##maf version=1 scoring=lastz.v1.04.00
# lastz.v1.04.00 --format=maf 
#
# hsp_threshold      = 3000
# gapped_threshold   = 3000
# x_drop             = 910
# y_drop             = 9400
# gap_open_penalty   = 400
# gap_extend_penalty = 30
#        A    C    G    T
#   A   91 -114  -31 -123
#   C -114  100 -125  -31
#   G  -31 -125  100 -114
#   T -123  -31 -114   91
a score=4912
s chr3             3348432 260 + 160039680 CTCAAGAAATGAGGAGCACGGGTTAAGAAAAAAGATCT-TAAGAATTTTTTTTTCTTTTTCTTTTTTCCTTTGGTTGTGGAAGTGTGGCCTTGGTTTCCCTTAGAAGGAAAAATAGATGAGAAGAGATGGACTAGAGTGGGTGACTGTATAAAAGATTTTTATAGGACTTTTGGCCCAGAAAAGATTCCTGTATAAGCCTTTTCTTATTGAAATCTTGTTAATGAAACTCTGAAAGTTTGTAAACGTTGCTCAGATATTCA
s HiC_scaffold_1 175366809 236 + 233722169 ctcaagattAGAGGAATCAAGGTTAAGACTAAAGACTTGctacagtactttcagtttattc-------------------AAGTGTGTTCATGGTTCCCTCTAGAGGGCACCATCAATTCAAATAGGTAGAAAAGAGTGGGAGATGCTCTCAAAGACTACTATGGGGTTTTTGGTCCGGAAAAGGTTTTGGTAACTTCTTTTgcatattggactttaatctctgagctgctgata------CAACGTCATGCAGATTCCCA

a score=5551
s chr3             3484286 580 + 160039680 TTTCTTTCTTGAAGACTACTTTCCTGTCTATTCAGCATCATCCTTCTCAGATTTTAGGAATGAGCT------------AGTGATGTGAGAGAATTCTTAGCCTCTATATACACAAAATGTGGGCCACTGCCAACATTTGAGTA-CAGATGTAAACACAAATAAAGAAGCTACATCCGTGTTGACAATTCTGGATGC-----------------------TATTGTTATTTTGGAAAGCTGTAGTGTTGCAAAGTGAACACCAAAAAtatctttagctacatttatactctgtttacaatctct--tgatttgatctaagatacttttga----atattaacttaaagctttggcaggtgctaatttattc------aaccat-----gagttcccacagaaccctgagca--ca-gaatattatcaggaagcacctgag----gctgaga--------------------------------tgccacttccctgctgtaagccacctgtgg--gatactctaaccaagata-------aatgtgtctgtttgtggctttctttttattttatgttaaaaacaaaaacaaaaacaaaaacaaactttcacagcagggcatctcactcaaggtaatttgaatccagttgcccaagccatgatcactcatacttggctcATAA
s HiC_scaffold_1 138540822 643 + 233722169 TCTCTTTCTTTAAGAATACTTTCCTGCCTACAAAGCCTCGTTTTTGTCAGATCTTAGGAATGAGCTTTCCTAGATCTCTGGGACATGAAACAATATTTGACCTCTGAACAC----AGTGTGGAGCTCTGCCAACA---GGGCAGCTGACGTTCAC-----TGAAGGAACCACATCTCAATTAAGGATCCTGCTGGCTAACTGACCTTGGCTAAGCAGAATACCATGATTGTGGAGCAAAGGAATGTTGCAGGTCGG--AGCCAAATTATCTCTGGCTAC-TTTAGGCCCATTAGAAAAAcactaataatttaa--------atttttaactttgtatCCACATACCATTCTTACAACAGTTAGGTAAATCTCCTGGAATGATTGTTAGGCTTCGCATCAAGCCTCCGGCAACCATAAATTCTAGAAGATAGCATCTGAATCCTACTGGAAGCTATTTCCATCTATTCTACTTATTCTATAATTTCCACTTCGCTGC----AGCCTCCCTTAACTAATACCTCCAccaaagtatttgttgaatgtaTTGACACATGATTTCCTTTGTGCTTTG-GCTATAA--------AGGTTTAAATACCATCTTTCTCTTCA-GATATGTC-CTTCAGGTACCATGAATCCATGTTCCCAGGACTTGGTCACTCatatttagtttagaa

a score=5137
s chr3             3733210 214 + 160039680 aagaagagagaaaaaagggagcaaagaaTAAGCCAT-TCACAGACAATTAACAAATATAGACTAAATATCCCTTACCTGAAATATTTGGGATCA-CAGTGTTTCTGGTTTGAGATTTTAAAACATTTGCATATACATAATGAGATATCTTGGGACTAGGATACA-AGCCAAGAAAAAAGTTTACCTAAATCCCATTCAATTTCTACACAAAGCCTGA
s HiC_scaffold_1 204834142 209 + 233722169 aaaaagagagagacagagagggagagagggcacAGTACCACATA--------AGATGCCAGTTAACCACCCCTTACCCAAAACACTTAGAGCCAGAAGTGTTTATGATTTCAGATTTGGAAATTTTTACACACACATAATGAGATATGTTGGGGGTAAGACCCATATCTAAGTATGAAACTCACTGGTTTCATATGTACCTGATACATGCAGACTGA

a score=6521
s chr3            3733229 226 + 160039680 agcaaagaaTAAGCCATTCACAGACAATTAACAAATATAGACTAAATATCCCTTACCTGAAATATTTGGGATCACAGTGTT-----TCTGGTTTGAGATTTTAAAACATTTGCATATACATAATGAGATATCTTGGGACTAGGATACAAGCCAAGAAAAAAGTTTACCTAAATCCCATTCAATTTCTACACAAAGCCTGAAGATGACAACTTTATACAGTATATTAGATGA
s HiC_scaffold_1 73645620 221 + 233722169 AGTAATGAACACACTAT-CACAGTCAC------AATAGAAAGTGAATATGCAGCATCCAAAATGTTTAGGATCAGAATTTGAATCAGTTATTTTCAAACTCTGAAATATTTGCACATACATAATGAGATTTCTTAGGACTAGGAcccagttttaaagaaaaatttatctgTTTCAAACACCCCTTTTGCACATagactgaaggt---aattttataggctattttaaataa

a score=15538
s chr3             3791891 401 + 160039680 CCATCATGAATAACACAGTAACCATCCGGACCACAAAGTTCATGATAAAGTGTCTGCTTCAGAGGAAACAGATGGTCATGGATGTCCTCCATCCTTGGAAGGCAAAAGTCCCAAAGACAGAAATTTGGGAAAAGCTGGCCAAAATGTACAAAACC-ACACCAGATGTCATCTTTGTATTTGGATTCAGATCCCACTTCGGTGGTGGCGAGACCACTGGCTTTGACATGATCTATGATTCTTTAGATTATGCAAAGAAGAATGAGCCTAAACACAGACATGGAAGCCATGGCCTTTATGAGAAGAAAAAGACCTCCCGAAAACAGCGAAAGGAACGCAAGAACAGAATGAAGAAGGTCAGGGGCAC---GAAGGCCAATGTTGGTGCTGGCAAAAAGCCAAAGGAG
s HiC_scaffold_1 227094059 370 + 233722169 CTGTCGTGAAGGACATGGTGACTGTCTAGACCAGGAAGTTTACGATCAAATGACCTCTTCAAGGGAGACAAGGGCTCATTGGTGGCTCACATCCTGGGAAAGCAAT-GTACCTAAGACAGAAATT-GGGAGGAACTTGCCAG--TTTACAAGGCCCACACCACATGTCG-CTTTGTGTTTTGATTCAAAATCTATTTTGGTGTTAGCAAGATTATTGGTTTTGGCATGATTTACGATTCCTTGGattatgtgaagaaaaatgaacc----------------------------TGTGAGAAGacaaag--tttaaggaaacagTGAAAGGAGTGCAAGGAAAGATGGAAGAAAGTCAGGGGGACTGTGAAGGCCAGTGCTGAAGCTGGCAAAAAGTGAGCGGAG

a score=13329
s chr3             3791891 500 + 160039680 CCATCATGAATAACACAGTAACCATCCGGACCACAAAGTTCATGATAAAGTGTCTGCTTCAGAGGAAACAGATGGTCATGGATGTCCTCCATCCTTGGAAGGCAAAAGTCCCAAAGACAGAAATTTGGGAAAAGCTGGCCAAAATGTACAAAACCACACCAGATGTCATCTTTGTATTTGGATTCAGATCCCACTTCGGTGGTGGCGAGACCACTGGCTTTGACATGATCTATGATTCTTTAGATTATGCAAAGAAGAATGAGCCTAAACACAGACATG-----------------GAAGCCATGGCCTTTATGAGAAGAAAAAGACCTCCCGAAAACAGCGAAAGGAACGCAAGAACAGAATGAAGAAGGTCAGGGGCACGAAGGCCAATGTTGGTGCTGGCAAAAAGCCAAAGGAGTAGA---TCTGCGGTGACTTGATGTTTTCCTGTGATGTGCAGATTTCTGAGAGGACAAATAAGCTAAAAAGTGTCTACAAAAGGAAAAAAAAAAAAAGAATC
s HiC_scaffold_1 178107507 469 + 233722169 CTGTCGTGAGTGACT--ATTACTGTATGGACCAGA---TTCATGGCCAATCAATTACTTCAAAGGGAA-AAATGGCCATCCATGACCTTAACCTTAGGAAAGACACGGGACCTGAGACATAAATTTGGGAAAA-CTTATGAAAATGTACACAACTACACCAGATGTTATCTTTGTATTTGGATTCAGAGTCCATTTGGGTGGTAGCAAGACAATTGGCTGTAGCGt----------------gattatgcaaagaaaaatgaactcaaaCACAGACTTGCATggcctgtttaaaaaaaagacaaggcctatatgaaaagagaaaggtctcaagaaaata--aacaggaaTGTAATATTCAGTGAGAGAATGTCAAGGTCAT----GCAAAAAGTGAT----GCAAAAAGTGAAAGGAGCAAAGGTTTCACAGTGACTGACTG-----CAGTGAC-TGCAGTGTTTTCATGAAACAA------TAAACAgt------agaaacttaaaaaaacaaaggatC

a score=18056
s chr3             3939022 640 + 160039680 atgatagtgaattaagatactagagggtGAAGAAAGAACGGATTGGTAAACCTCAGAGTGCGTTTCTGCCTGATGGAGGCCACTGTGGTGCAGAGACCCTCGTGTGAATCCACTGTCACCATGTCTGACCAGGAAGCAAAACCTTCAACTGAGGACTTAGGCAATAAGAAGGAAGGAGAATACATTAAACTC-------------aatatattaattaaattata-------------taatGTATACTCATTATTG------------------------------------------------------------------------------------------GACAGGATAGCAGTGAGTTACATTTCAAAGTGAAAATGACAACACATCTCAAGAAACTCAAAGAATCATACTGTCAAAGACAGGGAGTTCCAATGAATTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCTTACTCTGAAAGAACTGGGAATGGAGAAAGAAGATGTGATTAATGTTTATCAGGAACAAATGGGTGGGTCACTCGATGGTTTAGATA-ATTCCTTTTATT-TTTTCCTTTTCCCTCAATCCTTTTGTATTTTTTAAAATAGTTCTTTTGCAATGTGGTATTCAAAATGAAAATTGAATACTGGCACTCCTTC-TCTTAGAACA----------------TCCGAATTCTAGTATTCATAT-------TCATC-------ATTGGTTGTTTTTGTTGTGCTGATTTTTGGTGATCAGACCTC
s HiC_scaffold_1 161333742 752 + 233722169 acaatattaagtgaaaatgatTGTGGGGAAAGGAA--ATGGATTTATAAATCCCAGATAGAGGTTCTGCCT-ACCCAAAACACTGCTGTGCGGAGGCTCCTAGGTGAAACCATC----------CTGAC-AGGGGGTAACACTTTCACCTGAGGACTTAAG-ACTGAGAAGGAAGGCGACTGCATCAAACTCGAAACCACTGGGCAAGATAGCAGTGagatcccagcccttgggaggctgaggcaagaggattgctgcaagtttcaggccagcctgggcttcatggtgagttcaaggcctgaactacatagcaagacactgtctcaaaacaccgtaaaaagaaaaacaaaaagatagcagTGAGATTCACctcaaagtgaaaat---aacacaTCTCTAGAAATTCAAAGAACCATACCGTCAAAGATAGGGAGTTCCGATGAATTTGTTGAGGTTTCCCTGCAAAGATCAGGGAATTACTGATCATCAT-----------Actgggaa---gaaaggaagatgtGACTGAAGTTTATCAGAAACAAA----TGGCACACTGAACAGTTTATAgacattctttttattatttttcttttccttcaattcttgttttttttaaaaaatacttcttttgtAATGTGGcatccaaaatgaaaa-taaaaacttgtacCCCCTCTTTTTAAAACACTGCATAATTTATGTGTTCAAACCTCAGTTCCCTTATGTTGCCCTCCTCTTTTTGGgttggtggttttttttgtgtgtcttttttgagatggggtctc

a score=18214
s chr3             5473215 541 + 160039680 ttaaCATCCTGCTATCATTTCTTTTGTACCAAATTTATTCCTCTGTCA-AAT-TTCTCTTTCTTCATTTTCTTCCAGGATATCTTTTTTTTTTTTCTGTGCAAATTC----------------------------------------ACCATCTCAAAGTGGCAGGAGGAATT-ATGCATAAGCTAATACAGCCAAGAGCTCTGTAAATTTATCAGCGGGTCTTGGATGCTTTATTCAC-TGGATATATTCAATGACTGGAGATTCTACATCTAAACCCACAAGTTCA------------CCATTTTTATGCTTGTGAAGC-AAAACTCAGTACTCTTGTTTTGGTGAACAATGTTCTGTCTAGCTCCATTGTTTGTACTGGATTCGCCTACCAACTATACCATT-ATACTGTCTGAATAGCACACATTGTTTATTTAAG---------TTCAGATACTTGATGGCTTCTTTAATATGAAGATCCTTGATAGCCTGGGCAATCTCACAGGTGATTTTAAGTGACATGAAGAACTGAACCTCTTGATTTTCTTGGTTTTATAGTG-TTTCTGGATCAAAAGAATATAGAAACATCTTTACAGGTCACATC
s HiC_scaffold_1 209881292 595 + 233722169 ttaac-ttttattttcatttattttatgcttaatTTATTCCCATGctataatgttttgtttctttagtttcttctggGATATCTTTTTATT----CTGTGCTACTTCCTCCTCTGGTTTAAGAACAATTGATTCCTTTTCAGTAAGGATCATCTCAGTGTGGCAGGGGGAGCTCATGTATGGGTTATTCTGGCCATGAGCTCTGTAAATACAGCAGTACATCTTGGGTGCTTTGTTCACCTGGATATGTTCAATGACCAGAGAATCTACATCTAAACCTTGAAGTTCAGCATTACTCTTTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTT-TTTGGGCCACCAACCCTGTGTCCAGCCCCACTGTTTAGCCTGGGCACACCTACCATCTCCACCATTGGCAACGCCAGAATGGCACACAGTGCTTCTTTAATGGGACTTCCTTCAGGTACTTGGTGGCCTTTCAGATATGCATACCCTTGATGGCCTGGGTA---TTAAACATGAAGATGA---ACATGAAGATTTGAGCCTCTTGATTTGCATGATGTTGGGGGATTTTCTGCGGC--AAGAGTAGCAAACCATTCCCATAGGTAACCTC

a score=3989
s chr3             6138103 77 + 160039680 TCTTGTCAATGATTTTCACTGCCACCTTCTCACCTGTGAAGACATGCCTGGCAAGTTTGACCACTGCAAAATGACCT
s HiC_scaffold_1 176728465 77 + 233722169 TTTTATCCATGATTTTTATAGCCACCATTTCTCCAGTGAGGATATGACAGGCAAGTTTGACCTTCGCAAAGCCACCT

a score=37748
s chr3            6450405 1360 + 160039680 AGTTTTTGGGTG---CAGTGAACTTGATTGATGGTATTCAGGAAAGTAGGGAGGGCTCCCTAGGCCCCTCCTTTTATTATGGGGGTCTGGAATGGAAATT------ATGAGGGAGATGCTCAGTTTTG-GGGGCTGAGTTCGGATAGGGACTCCTCAGCAACCAAGGGCCTGTCTCTTGCTCTCCTTGTCCTTCCTGGGGTCCAAGGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGTCCACCACCCTGTTTTGGTAGCCGTATTCACTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGAAATGCCAGCCCCAGCATCAAAGGTGGAAGAGTGGGAGTTGCTGTTGAATTCGC--AGGAGACAACCTGATCCTCAGTGTAGCCTAGGATGCCCGTCAGAGGGCCCTTACATGCCTGCTTCACCACCATCTCGATGCCTTCATACTTGGCAGTTTTCTCCAGGTGGCTTGTCAGATCCACAATAGACATATTGGGGGTAGGAACACGGCAGGCCATGCCAAATAGCTTCCCTTTCAGTTCTGGGATGACCTTGCTCACAGCCTTGGCAGCACCAGTGGATGCAGGGATGATGTTCTGGACATCCCCATGGCAATCACACCACAGCTTTCCAGAGGGACCACTCACAGTCTTCTGAGTAGCAGTGATGGAGTGGATCGTGGTCATTAGCCCTTCTAGGATGCCAAAGTTGTCATGGATGACCTTGGCTATGGGAGCTAAGCAGTTGGTAGTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCCTATTTCTCTTGGTTCACACCCATGACAAACATGGAGGCATCGGCAGAAGGGGCAGAGATGATGACCCTATTGTCTCCACCCTTCAGGTGGGCCCTGACCTTCTCCATGGTGGTGAAGATGCCAGTACA-------------------------CACCCCATTTAACGTTAGTTGGATCTCACTCCTGGAAGATAGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTTTTGGCCTTAACTGTGCCATTGAATTTGCCATGTGTGAAGACATACAGGAACATATAGACCATGTAGTTGAGGTCAATGAAGTGGTCTTCAGTGGCAGCAATCTCTACTTTGACATGTGGATAGCAGATGGCAGCCCTGGTAACCCAGTGCCCAATAAGGCCAAATCCGTTCACAGCTACCTTCACCATTTTGTTTACCGGACAAGACTGGCCCTGCACAATTAGATACATCTGTCTCTGGAACAGGGAGGGGCAGAGAGCCAA-----ATAAAAG----------AAAAAtttaattagatattttctttatttatatttcaaa----tgttatccccttttctggtttcccctctgaaaaacatcctccttctatcctcttcc
s HiC_scaffold_1 97936676 1343 + 233722169 AACTTTTGGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA------------TCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctctt----ttcatttcttgctcAGGCT----GGTGGCCTACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCC-AGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAG-CCAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGA---TCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATC--CAGTCTTCTGTATAAGAAGGATGACCTG----GTGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGTTCACCCATTTTGATGCT-GATAAATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTG-CCTGT-----CCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGCCATGAAA----GGATGTTGCtgtctgtaaaatgagaagaaaaaataaaacagatcccATGCaagtattaattttgaaagtgtatATAAACAAGTTCTATA---ACACTACAAAATTTcattgttcctttttctctttctctttttt-----cattgttcctttttcctctttc

a score=21624
s chr3           6450463 1195 + 160039680 AGGCCCCTCCTTT-TATTATGGGGGTCTGGAATGGAAATTATG--------AGGGAGATGCTCAG--TTTTGGGGGCTGAGTTCGGATAGGGACTCCTCAGCAACCAAGGGCCTGTCTCTTGCTCTCCTTGTCCTTC-----CTGGGGTCCAAGGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGTCCACCACCCTGTTTTGGTAGCCGTATTCACTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATT---------------------------------------------------------------------------GAGAGAAATGCCAGCCCCAGC--------------------ATCAAAGGTGGAAGAGTGGGAGTTGCTGTTGAATTCGCAGGAGACAACCTGATCCTCAGTGTAG--------CCTAGGATGCCCGTCAGAGGGCCCTTACATGCCTGCTTCACCACCATCTCGATGCCTTCATACTTGGCAGTTTTCTCCAGGTGGCTT--------GTCAGATCCACAATAGACATATTGGGGGTAGGAACACGGCAGGCCA-TGCCAAATAGCTTCCCTTTCAGTTCTGGGATGACCTTGCTCACAGCCTTGGCAGCAC----CAGTGGATGCAGGGATGATGTTCTGGACATCCCCATGGCAATCACACCACAGCTTTC-CAGAGGGACCACTCACAGTCTTCTGAGTAGCAGTGATGGAGTGGATCGTGGTCATTAGCCCTTCTAGGATGCCAAAGTTGTCATGGATGACCTTGGCTATGGGAGCTAAGCAGTTGGTAGTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCCTATTTCTCTTGGTTCACACCCATGACAAACATGGAGGCATCGGCAGAAGGGGCAGAGATGATGACCCTATTGTCTCCACCCTTCAGGTGGGCCCTGACCTTCTCCATGGTGGTGAAGATGCCAGTACA--------------------------CACCCCATTTAACGTTAGTTGGATCTCACTCCTGGAAGATAGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTTTTGGCCTTAACTGTGCCATTGAATTTGCCATGTGTGAAGACATACAGGAACATATAGACCATGTAGTTGAGGTCAATGAAGTGGTCTTCAGTGGCAGCAATCTCTACTTTGACATGTGGATAGCAGATGGCAGCCCTGGTAACCCAGTGCCCAATAAGGCCAAATCCGTTCACAGCTACCTTCACCATTTTGTTTACCGGACAAGAC----TGGCCCTGCACAATTAGATACATCTGTCTCTGGAACAGGGA---GGGGCAGAGA
s HiC_scaffold_1 9527136 1264 + 233722169 AGACCCATCCTTTGTA----AGGAGTCTGTGGTAAAACCTATGCCAAAAAAGGGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAGCAGGGA-TCCATAGCATGAGACAgtctttctttcttactcttcCTTCTCCTGGAGCTGGTGATCCGGAAGGCCCAATCCTTGGATGTC---------------------------TTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATTTCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTT-TTAAGGATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTC-TTGTAGGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTT-AGCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGG-GTTCTCAGGAGAAGGGG---------------------CTCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC----TGG--AGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAATTACTCCA-----GTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAGTTGAGGCAGGGA

a score=21000
s chr3             7192715 572 + 160039680 tcttcttcttcttcttTTTACTTAAGCAGTCTTTAATGCAAGCTGTCCATGAGCTATCTCTACTCCTGTACCGTCTCGATCGTTTCTTCCTTGTATTTGCCCTTCTCCTTTCCTACTTGTCAGAACTTGGCTTTTCTTTCTAGGATCTTCTTGCGGTCCTC--CCAGCTTTAGCCTTGTGATAACCACCTTGCTGGGGTGGATGCCCACTCGGACAGTTGTGCCATTAGCCTTCTCTCGCTCGACTTGTTTGATGTAGATGACATATTTTTTCCTGTACACTTGGACCACCTTGCCAATCTGCTGGCCTTTGTAGTGTCCTCGAACAACCTGAACTTCATCATCCTTTTGAGTGGGCATAGACTGAACATTATACTTCTGTCTCAGCTCTTTGGAAAGAGGGGAAGACATGATCTTCCTTAGTATGTGAGAAGGTGCATTGAAATGCCATTTGTGTTTCATGCTTCTGTCAGAAGTCACAAAGGGATTGAACTTCATTTTCTTTTTTTTTTTTTATTTAtttttttccatttttta---ttaggtatgtaactcat----ttaca-tttccaatgctatacc
s HiC_scaffold_1 204182175 534 + 233722169 tttgctttttttgtgtgtgattttagcagttttaaat------tatgtataagAGGAGTTTATATCTGTGTCTTCTCATTTGTTTCTCCATTATATTTGCCCTCTTACTTCTCTGCTTGTTGATATTTGAGTTGGTTTTCTAGGATCTTTTGGTGGTCTTTGTCCAGCTTTAGCCTGGTGATAACTACCTTGCAGGGATGAATGCCCACGTAGACAGTTGTGCCATTTGCCTTTTCACCCTGCACCCATTCGGTGTAGATGACATATTTCTTCCTGTAAATGTGGACACCTTTGCCAGTCTGCTAACCTTTATTTTGTCATTGCAAAACCTGACCTTCATCCTACTGTTGGATGGATACAGACAGAACATTGTATTTCTGTCTCAGCTATTTAGAAAGAAGGGAAGATACAATCTTTTGCAA-ATGTGGGCAGGTGTATTGAAATG---------------GATTTTGctggggg--------------------------tttttgttgttgttgttgtttgtttgtgttttttggtcctgggaattgaactcataacatTGCAGTTgccagagctatatc

a score=19583
s chr3             7192763 438 + 160039680 ATGAGCTATCTCTACTCCTGTACCGTCTCGATCGTTTCTTCCTTGTATTTGCCCTTCTCCTTTCCTACTTGTCAGAACTTGGCTTTTCTTTCTAGGATCTTCTTGCGGTCCTC--CCAGCTTTAGCCTTGTGATAACCACCTTGCTGGGGTGGATGCCCACTCGGACAGTTGTGCCATTAGCCTTCTCTCGCTCGACTTGTTTGATGTAGATGACATATTTTTTCCTGTACACTTGGACCACCTTGCCAATCT-GCTGGCCTTTGTAGTGTCCTCGAACAACCTGAACTTCATCATCCTTTTGAGTGGGCATAGACTGAACATTATACTTCTGTCTCAGCTCTTTGGAAAGAGGGGAAGACATGATCTTCCTTAGTATGTGAGAAGGTGCATTGAAATGCCATTTGTGTTTCATGCTTCTGTCAGAAGTCACAAAGGGATT
s HiC_scaffold_1 160086732 436 + 233722169 ATGAGTTACAGTCACATCTACATTTTCTCAACAagcttttctttgcatttgcc----TCTTTTCCAACTTGCTGAGACTTGGGTTTGcattcaataattttttt-ctgtctttgtccaGTTTTAGCCTGGTGATAACTTCCTTCTTTGGGTGAATGCCCACATGAATGGTTGTGCCATCAGCCTTCTTACGCTGCACTCACTGGCTGAAGATGACATATTTCTTTCTGTACACCTGAACTGCCCTgctgattttgctgtcttttgtaGTGTCCTCAAACCACCTGGACCTCATCGTCCTTGCAGATGGGCATGGAATGGTTATTGTACTTTTGCCACAGTTCCTTCAAAAGAGGGGAAGATGTGATTTTTCAGTGCAAGGATGAGGGGGCCTTGAAGTGCCATTTCTGGTTTTTGCTGTGGTCTGAGGTCACAAAGGGGTT

a score=17161
s chr3            7192777 436 + 160039680 CTCCTGTACCGTCTCGATCGTTTCTTCCTTGTATTTGCCCTTCTCCTTTCCTACTTGTCAGAACTTGGCTTTTCTTTCTAGGATCTTCTTGCGGTCCTC--CCAGCTTTAGCCTTGTGATAACCACCTTGCTGGGGTGGATGCCCACTCGGACAGTTGTGCCATTAGCCTTCTCTCGCTCGACTTGTTTGATGTAGATGACA------TATTTTTTCCTGTACACTTGGACCACCTTGCCAATCTGCTGGCCTTTGTAGTGTCCTCGAACAACCTGAACTTCATCATCCTTTTGAGTGGGCATAGACTGAACATTATACTTCTGTCTCAGCTCTTTGGAAAGAGGGGAAGACATGATCTTCCTTAGTATGTGAGAAGGTGCATTGAAATGCCATTTGTGTTTCATGCTTCTGTCAGAAGTCACAAAGGGATTGAACTTCATTTT
s HiC_scaffold_1 79470390 413 + 233722169 ctccttcattttctgagttgtttcttccttttatttgtccTTATCCTTTTCTGCCTGGGAAGATGTGGCTTTCTGTTCCAGGatctttttgttttcactgtcAAGTTTTAGCCTGGTGATAACCACCCTGCTGGGATCAGTGTACAC-AGGACAGTTACATGATTAGTCC---------------ATTCAGTAGatatgatacttttttttttttttttgtaaacctGAACTGTTTTGCCAGTCTGCTGATGTGTATATTAT------ACAATCTGAACTTCATCATCCTTTTAGGTGGGCAGAGAACAAATAGCATACTTCTGTCTCTGCTTTTTGGAAAAAATGGAAGACATGATCTTCCTGAAAACCTAGGAAGGTgcattaaaa------atgtcttttacaaTTTTT---GAAGTCACAAAGGAATTGAACTCCATATT

a score=63958
s chr3            7218430 3557 + 160039680 atggtagaggacatcaagaaggactttaataaatcacttaaagaaatacaggagaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttacagaaaaagagg----aaaaaacatac----aaacaggtgatggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAG-CGAGGCAACACTAGAGATAGAAACCCTAGGAA--AGAAAT----CTGGAACCATAGATTTGAGCATCAGCAA---------CAGAATACAAGAGATGGAAGAGAGAATCTCA----GGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGA--TGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGAT---GCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGA-GGGAGAAACCAAAGTATTCCACGACAAAACCAAA-TTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCA-ATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAAT------------------CCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACA-------ACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATT---CAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTT-----GACCTTCTAA----ACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA-----GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGC---CACTATTACTCTGATAC----------------CTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC----AGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG----ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC-----ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAat---acctaaacatgataaaag-caatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaa-agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggag
s HiC_scaffold_1 65294954 3466 + 233722169 ATTGAAGAGGAAATCAA--AGCACAGTAG--AATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaA--------TAACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACCAAATAAAATCCAGGAGatcaaaaattacactgaaagcaTAGGCAGGAGAAATGACAAATGTGAGCACAGAGTACT-GAAATAGAAGATGGAG-CTGATGTTGGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatgga----gccaacagctgctagat------------gaaaTGCGG-----------AAGACTAAATTAAC---TGGAAGGAGTAAAAATCAGAACGAAG---TACAAAT----GGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAG--gtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACC--CAAAAAATTCT--CAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaaaaaaaaaaaaaaaaaaaaacctataaaaataaatacaccaaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTG------------AGACCCAGCAGTATGCTGTATATCAGAAAGTCATTTAATCCAAAAAA--------CATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGATTACCACAt-------attaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGACTTAGAAGATCTGATA------TATACAATTATATTGAAGAACTTCAATACCACACTGACACAAA----CATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGAACATTCTAACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaagg--taagacCTAAATC-------TTAGAAATTAGGA-------ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAA---TAAGATATAAAGACCCTGGAATAATACAGTCACAG-----CCAATGAATTA-----AACCATAAATAAGAACATCTATGAACAAATATAAACCCA-GACTA----CGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAG--CAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGtca---cacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAATACAGAAGGATTCCTTTTAcaaaagggaagggg

a score=9694
s chr3            7218516 709 + 160039680 aaaacaggaaaacacaatcaaacaggtagaagtcc-ttacagaaaaagaggaaaaaacatacaaacaggtgatggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGCGAGGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACA-ATCAAAGAAAATGGAAAATGCA-AAAAGATCCTAACTCAAAA----TATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCC
s HiC_scaffold_1 87508822 669 + 233722169 AAAGCAGAAACACATAAGCAGTTTTACAAGATTCTATTAAAGAAGTAAAggattttactaataaaatgctGGATGAACTTaaggaagaaacaataaa--tagTTAAAGAATTAGAcattatgaaaagaaagcaaacaga---aatacagaatgtGAAGAATTCAGTAGAAAGTATGGTGAGCACA---TTCAGC--CAGTATCAGGACAGACAGCATGGAAAAA----------------------CCGAAGACAAGATCGATGTAATAGATCA--TAAACTGAATGATGTTTGAAAAATGATAACAGGAAAGCTATATCCAGGAGCTGCTAGATGGCTCACAAAAACCCCACACCAGATTTATaggcataaaagaaaaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC

a score=84059
s chr3            7218555 4572 + 160039680 [encoded data, 4796 characters]
s HiC_scaffold_1 71797446 4446 + 233722169 [encoded data, 4796 characters]

a score=23229
s chr3            7218628 2706 + 160039680 GACACAATAAAGAAAACTCAAAGCGAGGCAACA---CTAGAGATAGAAACCCTAGGAA---------AGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAA------CGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCT--TCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATG---CATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT--AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAG-AGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACA--GAATGCCACCTTTAACAACTAAAA-TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAA-ACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACAT-----TCACTAAAGAAACTTTAGT--AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGG--ATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATG--GAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAA--AGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATA-CTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAG-------GATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC------CAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCG--------------------------------------------------------------------------------------------AATCCAAG-----------------------------------------------------------------------------------------------AACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAG--ATCAGGAATTCAAGGCCA
s HiC_scaffold_1 89593996 2654 + 233722169 GATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaaga----aaagataaacg-gGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCAtggaaaaag-------------------aactaaaaat-----gaaagattaaga-ataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACTAAAGCAT-----AAGCATCTATCCATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCTCATTTAAAGGCATTTG----CTTC----TCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAACTCATGACAAGTA--------------AGCCAGCattccagaaaatattta------aatatcacaaaGACAATGAGTATAAGACCATGTAAAGTATAA--atttaat---tggaaaaat------aaagacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAA-TCTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGATCT-----GGAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaaca-aaaatctttaagt--GACAAAGAATGCCACTACAC-ATTGTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGG-------AACACAAATGCCTGCACATGttatttcataaaacaatttCACTTGAAAAGACAAA---CACATC------CCCAAAAATATAGTAGGGGACTTCAACAC--TATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG--ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT----------------------------TTTAAA---------------------GTTCTATTGCATCACAatggaatgaaacta------------gaaattattaggaaaaaaattacatgaatatGCTGAAATTGAG---------TTAAAATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTAC----AAAAGCAAGAGTGGTTCCCAAAAAATAACCTAATGGTa---ctaaag-----agaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat--------taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=17448
s chr3            7218787 1164 + 160039680 AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAA--GACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA--TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA--ACCAAATTCACGCATTATCTCTCCACG--AATCCAGCCCTTCAAAGGATAATG----------------ACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAC-CTTTAACAACTAA-----------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGA-----------------------ACTCT-------CAATT-CTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGA
s HiC_scaffold_1 67576299 1162 + 233722169 AGACAAAATAGTGAATAacaataaag---aactcaaagaagctaagaagaaaaatagacaataaGAAAAGACTAtgca-acagctgctag------atgatagCACAGATG---AATTCA---------CTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagtttaaaatacaagtaactgacatttataaaacattgaaCAATTATGAT--AAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTT---GGATGATATATGAGTGCTAAATCAGCTCT---Aaggaaaatacttaagaatattctcaacagaaacaa--taagtcagacacagctaaaatcacagaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccgg--aaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaa

a score=84863
s chr3            7218799 4378 + 160039680 [encoded data, 4542 characters]
s HiC_scaffold_1 91695044 4298 + 233722169 [encoded data, 4542 characters]

a score=4591
s chr3             7218821 358 + 160039680 AAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAA-----------------------------------------------------------AATTATTGA----------------------------------------------------------------------------------------------------------AGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACA-TACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA---------TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAG-CCAGAAGAGC
s HiC_scaffold_1 139027905 529 + 233722169 AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAATCAGGGATAGGGCCTTGGCTCAGGGTTAAAGCTCCTGTGTAGCACTGTAAGGGCCAGGGTTCAATTCTTAGCAAAGGTAAGAGGGAGGAGGGATGCAGGGAAGGAGGgatgggaaaggaggaggagaagaaaaggaggaaggaaaggatgggtggatgggttCTGTAAAACAACACCAGAAAACTTCCCGAACCTTGGGAA--AGATACAGACATCCAGTACAGGAGGCATTTAGAACCTCAAATAAGCATGACCAGAAAAAACTCTCCCCACATCACTTTACAGTTAAAATGTCAAGAGTACAGAATAAGGGGAAGAGTCCTGGAAAATCCAGGACAGCAACAGCAAA---TCACTTGTGCTATGACAGGGCACCTATCAGAGTAACTACAGGGTCCCCTGCAGAGACTCTTAATGACCAGGAGGGC

a score=19419
s chr3            7218870 1514 + 160039680 AATAGGAGTGGATGAGAA---TGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTG-AAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAG--AATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT-----------------------------------------------------------------------------------------------ATACAGACACTAAGAGAACACAAACTG---------------------------------------CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGG-AGAAACCAAAGTA-TTCCACGA----------CAAAA---CCAAA-----TTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCA-ATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTA---ATCCCTCAACAAACCTA---AAAGAAGACAGCCACAAGAACAGAA---TGCCACCTTTAACA----------ACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGC-------TGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGG-AGACTTCAACACACCACTTTCACCAATGG-------------ACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGA------AAGCCAACA-------TTCACA------------------TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAA
s HiC_scaffold_1 55628325 1684 + 233722169 aataagaataaaagaaaaactggaagat----gacT-AAAGAggcataaaatttatttactgaaataatagcaaaaaaactTTTTGAAGGTAGGGAAATAATTCACTATGTAAATATGAGGTATCTA-AAACCCCAAAATAGCTAGAGCTAGAACAT---CTGCTCTTGACACTtcctaatcaaaattccaga--aatttaagGAAATCagcaaatattaaaagctgctaaagAAAAGTAGCAAGATACTTATAAAAGCAAGCTTATTAAAATTAtgacagatttctcagcacaaatttTAAAGGCCAAGGGAGCTTAGAATGAAGTTTTCAAGCCGTAAAAGAAAGCAGTTGTCCAGGAaggggtataactcagtggtacagaacCTGTCTGGTAAGTGGAAGGTCCTGCGTTCTATTTGCagtacaaaaagcaaaacaaagcaaatcaagcaagcaagcaaacaaacaaacaaataaaaacgcTTGTCAGGCTAAGCTACTCTAGCCCACAAAATT---AACCTCCAAAACTGACAGAAAATAAAGCACTTTCATGGACCTTTGTCCCAAAGGTCCCAAAGAATCCCAAAGAACTACATGCCCACTAaaccagaatttcagaaaata----tataaagGATTCATACACAGGGAGACCATCAGCACCAAAGAATCTCCCAGAATGTATACAACTGTCTGGAAGAGTAGTTAAATAGAAAAG----GAGGGCAAAACCCTGACACAGTAAGCATTGGAAAAATGCTGGAATGATAGTACCCAGTAAATACCTTAC---AATAATTCTCAGTGTCAGTGATCTTAGCTCCACAGTCAACAGACTGAGACTAGCAGATTGgatcaaaaatcaaaatgcaaccatatacacacacatatgtacagtAGATACActttattcaaaaggaaaataatagagtAATTGTGGAAGGCTGGAAAATGATACTCTATGCATCTGGGGCAATAAAGCAAGCAGGAGGAGCTATCTTATTTTCAGACACAACAAGCTTTAAGCTAAAACTTATTAAAGAC-ACAACGATGGATACTACATACTGGTAAAGGGAACAGTTCAAC-AGAAGAGATGATAACAGTAAATATCTGAACTCTAAATGTTGGTATGACCAATGTCATT-----AACACTACTGGACCGCAAATGACAGATAGACACCAGTACAACCATAGTGGGTGGATTTCAGTACACTA-----ACCAATAGATGAAAAGTTAACACAGGTCAAGTAGATGAAAAGTTAACGAGGAAATATCAGAGTTTAATCATACCATTAAGTAAGTGGACTTGACAGAAATCTACAGAGTGTTTTATCCAACAACAGAATG--------------CAGCA---CGTGG--ACTTTTGCTAAATAGAACATACGTTAGGCCATAAAGCATGCCCAAATACATACCAAATAATGAAGA--ATCGCATGAATTCTATTGGATCACAATGGAGTAAGAgaga-aatcaatggaaaaacaaacaacaaacaaaacaaaacaacaataaaactcCACACAGACATTACACAAACACTGGAGATTAAACAATATGTTACCAAATAACCAATGGATCATAGCAGAAgtcagggaagaaataaaaaagattctaGGATCAATTGACAATGGAAGCACAATATG-CAAAACATAAGGGACTCAGTGAAACAG--TCTAAGTGGGAAGGTTATGGTCCTGAATGCACCCGTTAAAAAA

a score=30209
s chr3             7218900 2468 + 160039680 ACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCC----CTAGAAA-----AAACAA-----------------GAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGA--AACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGT-------------------------------------------------------------------------------------------------------CATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGA--AACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG----CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGG-ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGA----AGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG---ACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT--CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA----TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaa
s HiC_scaffold_1 116834065 2369 + 233722169 ATTCAAAGGTC-ATAAAACATATTCAC-----TTAT--AAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaaga-aaaatacaaaaagttgtTACATAAAAAGAGCAG------CAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATACAATAGAGAAAATAGTTA---ACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaatt--------aaacaaaaggaaaaaaaacaaaagaat----tggcAT-TGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAATACT-GAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagat------taatAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGA-ACAACAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCA---------------------ACTTCA-------CAGAACAAAAAC---------------------------------TGCTGTACATATAAGG-------------------------------------AAAAACATATCA------ATACAATTACAGTGAGAAA-TTCAATAACCTACTCTCAAAACTAG-CAggtcaacaagacaaaaaattagca-----aaactTATCAGTTAAACAATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAAA---------ACATG---ATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAAC-----AGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgatttttaaaaaccctg---------------------------cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=27605
s chr3             7218904 1662 + 160039680 AAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCT----AAAGAATGAGATGCA----------TATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAA-----AACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGA-CAGAAAAAAACCAATACA--AGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACA---TTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTG--ATGAA--ACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAG---AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291805 1557 + 233722169 AATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgcAAATAAATGATATACAGGGACtggatttaaaatgcaaaataagcaTATAG------------------CCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTA-----CTGCTAAATCAGTTTTGCAAAACTTACTGAGTTTTGCAAAACTTACTCAGGAGAGCATGAA------------------AAGGAGTAAATCTT--------ATTAAAAGA-----GTCAATAAATCAGAATCAAAC----AATCAATGAAATAACAGGGAGCAATACATACCATTCC------------AAC-----TGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTCACAAACAGGCTAtctaaaaaatcagcaaagaaaca-------attgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGTAAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACG-----------------GTTAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=55474
s chr3             7218905 2822 + 160039680 AAGGTCCAGCAAACATCTTCAACAAAATTA-------TTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-----------------GAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACC------AAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGG-ATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGA-------AAAAACAAGA-AGGTAATCCCTCAA-CAAACCTAAAAGAAGACAGCCACAAG---AACAGAATGCCACCTTTAACAACTAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCA-AATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCACCAA-TGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGC--------TAGACTCACTAAAGGGCACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaa-aatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 128206407 2921 + 233722169 AGGATATAAAAAACCTTGTTAACAGGTTTACTTTTGTTTacaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtc-aactccaattagccatgattaaaacaaagaaacaagaagagaaaaaacaccTTACACTGAGGCATATAATTGTCAggattccaaaaattcaacataggaaaataacattaaaaagtattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGGAAAggttgcagtgaagtatttcaagccctgaaagaacaTACCCCCCAGCACAGGTTGATATAATCTGtgaaactttccttcaaaattggtggagaaacaagatacttccatgacaaagaacacctggttgaaattcatga---------ccaccaagccaacactCCAAAAACATTCTGA-------AGACTAATATACAAA-GAGAACAAAGACTCCAATTTCATGAGCCCCAAGAGATTTAATCCATcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGAGAAATTAGATGACAGAAATAAGTTAACACACATCCTTCATAATCACCACTGTTAGtggactcaattcaccaatcaaaagaaacagattggcagaatggctCAGGAAACAAGATCCAGggttggagatacagctcagtggcacagcgcctactTAGCAAGATCAAGCTCATTAGTTCcttgcccagtaccaaaaacaaaagaaaagagaaacaagatccaacaatatgcggCATACAAGAAATATGTTTAACATGGAAAGATACTTATACATTAACAGTCAAAGTgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatt-tgcagtcCAACTGgattcaagccaaaactgatcaagcCA--CAAAGCAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataacaatcataaatatgtatgcccCCCAGGACCAGAGCAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTACTGCCACAAAATGGGCAGATCAACTAGACGACAAATCAGAAAAAGA---ACTGAGTCAAACTT------TTGAACACATGGACTTAGTAGTTGTCTACAGAGTTTTCCGCCCCACCActtcataatacacattcttctccaaTCCTcaagttttgttttccaaaataacCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaagaaactgaaatcattCCATGCATATTAGCAGACCCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAATGTCC-TAcgaatatggaaattaaataacatccttgtgaacaaccagtggatcacagataaaattaaagaacaaattagcaAGTTTCTACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccatacagagaatgaatgaattaaagagGTAGTTCTT--GGAAGATGAAGTAAAACAGACAACCTCTTAGCAAacattgtaaaattttaaaaaggaa-----acaaagtcttagattcatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATCCCTATGTC-ATATGAATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAATGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgactAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGAACTACCTAATGCTGCCACTCCTCAAACTCTAGTGAAGTCGAAAGGTAATCAGTACTC--CCTaagtcatccctggaagcaagcattac-ctgtTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAATCTACCTAATGAGCATAGACAGAAGAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACCAGgtaggattcatcctagggatgcagggaGAGCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAACCAAGGATAAAAACCACTCAATCATCTCATTAAGCACAGAAAAATCATCAGTTAAATGCCAACACCCCTTCAAGAGAAAAACTGTACAGAATATCCAACTATATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatccaTTTTAGTAGCATAGCTGGGTACGAAATCAACACACAAATATCAACAGCATGCCTATACAAATGtaacaaactcagtgagagagaaattaaggaaac

a score=79067
s chr3             7218915 3960 + 160039680 [encoded data, 4336 characters]
s HiC_scaffold_1 135385634 4029 + 233722169 [encoded data, 4336 characters]

a score=50583
s chr3            7218923 4026 + 160039680 [encoded data, 4475 characters]
s HiC_scaffold_1 55842561 4139 + 233722169 [encoded data, 4475 characters]

a score=10519
s chr3             7218929 768 + 160039680 AAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT-TATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTA----TCATAGAGGGAGAAACCAAAGTA-TTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAAT-------------GACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAG------------AAGGTAATCCCTCAACAAACCTAAAAGAAGA--CAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCC--TAATATCT
s HiC_scaffold_1 129057714 743 + 233722169 AAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATAGAAAAAAACCCTGAAGTCC------AACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtg-----aaataaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaa------gaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAA-TGGTT--TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta------aaattaAGACtcaaaaacagtattccatgcaacatgaACCTAAAAATAAGTAGGAGTTGAcatacagtgatacct

a score=38301
s chr3             7218938 2925 + 160039680 AAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACT--AAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC------AATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAA-----CCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACC---AATACAAGAACGGGAACAACGCC-------------------CTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT---CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAAC-----------AAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAAT-AGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCT---TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA---AAAAGGAAGCAAATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGG---TACCAAAGTTGAATCAGGATCAAGTTGACCT-TCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG-----AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACA---AACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTC-TGGAAAGATCAGGAA----------------TTCAAGGCCAat-------acctaaacatgataaaagcaatct--acagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa--atcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaaga------------tctcagaagatggaaagat
s HiC_scaffold_1 171883955 2733 + 233722169 aaaaaaactttccaaatatggaGAAAGAGTCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAAGTATGAAGTAATGAGATACC-------TTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc-----aaactagcactccaa-----aatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCAAATGGTCCAACCAAATGACTACAGCATAC---AGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagaga---aaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCC-AAATAGAAAACATACTCATCTCATAAAGGCATACTTAA-GTATTCATAAGGAgtcaaaattattccatgcatac-aTCAGGTCATAGTGCA-TAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACA-CAAGAACTTTGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaac-----agtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaa-----------------caataaacaaa--caagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGTTCT----CAGATAACAGAAATTATCAAAAATGAAccaaggccaga--gatttagctcagcagccc---------------------agcaggtgtga--agtc---------------------------atgagttca---caGAGCGCagtaaatcatt--aaaaagatcatacatcaaaACCAACAAGGGTTTCTCCCAGGGATGATTCAACAgacaaattaataaatgcaatGTGTCA--------------------------CATAGACAGA---AGCAAAAATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAA-----ATGCAACAATTCATGGTAAAagtct-------------gaagaaaataggtatagaatgATCTTTTCTGA----------------------------AGCTGGT----------AAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgggaaaaactgaaagctt-tccctctaaagcCAGGAACACagccaagcgtggt--ggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataa----aataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaaggg-tacgtacaagaaaa-aagaaataaaattatcattattttcagataacaTGAGCGTCTACAT-AGAAAACCAAAAAATTCCAC---------TCCAAAATTAATATCCA---------AAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaaca----ggaaCTAATCT----AAGACAGTGAAAGTCCTTTACAATGAAAACTCCTA-----TGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=107297
s chr3             7218941 4329 + 160039680 [encoded data, 4849 characters]
s HiC_scaffold_1 195237049 4703 + 233722169 [encoded data, 4849 characters]

a score=29806
s chr3             7218946 1970 + 160039680 TTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAA------------AACCAAATTCACG--CATTATCTC-------------TCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATAC------------AAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAG---ATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTA--TGAA-GAAACAAGCAGGAGTAGCCATCCTAATATC----------------------TGATAAGA--------------------------------------TTGACTTCC-----------------------AACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTA----GTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACAC-CACTTTCACCAATGGACAGATCA--TGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCT----------CAACAGATTCAAAAATA---------------------------------------------------------------------------------------------TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-AGAAAAAACGG----------GAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-----------CAAATTCACCCAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT----CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881341 2293 + 233722169 ttcccaagtcaaaaaaaaaaaaaaaaaggaaaga---aagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-GCCATATTGTTCTCTAAGTACCAGGAATTCATCACAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTC---CTtcagaaatgaataaag-aaagtatttccatgacaaggaacacatctaaaaaaaattcatgaccatcataacagcatttaaaaaattctcaagtgTAAcctagaaagaaataatga-----agccAGCAATACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaagg------------------aaaaggaaaaaataaggagATCAGCAGAAGGACTGTAA----TGGgatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA------AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggtatagacatgaaaaaatcaga-taaaca------ccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAGACTCAAAAcc------atacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=66161
s chr3             7218979 4275 + 160039680 [encoded data, 4581 characters]
s HiC_scaffold_1 189257286 4392 + 233722169 [encoded data, 4581 characters]

a score=65545
s chr3             7218990 3337 + 160039680 CTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTG-CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT----------------------AATGACAGAAAAAAACCAAT-ACAAGAACGGG-------------------AACAACGCCCTAGAAAAAACAAG------AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTT----------AACAACTAA--------------------AATAACAGGAAGCAACAAT-------------------------------------------------TACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTC---CAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAAT-------------------------TCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAA----------------CAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAG------CAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTT-AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaa---------------gtattagccagagcaattcga----------caacaaaagg---------------------agatcaaggg---------------------------------------------------gatacaaattggaaaa------------------gaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat-----------------------------------------------------------------------------------------------------------------------------------taactcaaacaagt--------------------caatg-----------------------------------------------------------------------gcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcgg-cgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgca--------aattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtac-----------------------------------tggtat-------------agagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaa---------gacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttg
s HiC_scaffold_1 133193526 3792 + 233722169 CCATATAGCTCCAgttagccatgat---aaaaaaattacagcaaaaCATGTAAAAGTCATGATTCCAGAAACTCAAAATAAGATCAtaat--taaaagttgttagagaaaagaaacaaatcacctacaaaggaaagcccatcagaatcacagctaacTTCTCACAAG---CCCTCAAATT---AAGGacttgaagtaaaatatttaaagccctaaaggaaaacaacctttcaacccagattgatgtaacctataaaactatctttcaaaattgatggagaaataagatacttctatgaaaaGAATATCTGAGTAAATT-TTtggccaccaaaccagcactctaaaATGTTCTCACGCatgttctagaaagagataacaaagaatTACAACTCATAAGGCCaaggctttagctcagtggcccaagcacctacctggcaagtgcaaggtcatgagtttgatctctgct---accaaaaaaaagaaaaaaaaaaaaaaagaatacaactcCTTGAATcccaagacaatgaatgcaattggcaaggcaaacaaataaaaggaagaaaaaataagagagctaacaacagaaaaatatcatGACAATGACtgaataagtcaatacatatcagttataaccactaatgttaatgatctcaattcatcaatcaaaagaaaca--ttggcagaatggatcaagaagcaagatgcaacAATGTGCTGCATAAAGGAAACacattttacttaaaaaagaaatgcatagacA--------GAATCAAAGAGTGGGAAACAATAGTCCATGccacaagaacccagaaaaaagcagaagtagctattctatttgcagacaaagtggatttcatcCAAGTCAGAGT----AAGAGAGACAAAGGG---CACTACATCCTTATGAAAGa-------atctaagaggaagagataacatatatatatatatatatatatatatatatatatatatacagcaaATACTAATGCATCCAACtacatataaaaaatattaatggacacgaaaaatcaaataaacactaatacaattatattggGGTACTTCCATACCTC-CTGCCACAAGT----AGATCATCTAGACAAAAAGTTAACAATGTAATATTAGAACAGAACctaacttttgaacaaatggacttggtagatacctacagagtgttccaccctacaacatcagaatacacattcttctcagctacacacgGGATGTTCTGCAAAACTGTCCACATACTATCTCATAGAACATaactaagtaaatgaaaaggaattgaaatt-ccccatgcatattatcagaccatagtgcaacaaaattggaaattgatagtaaaagaaaccaaaagaactTCATAAACTGATGGAAATTAAAAGTggcatattaaaaataatatccttctgaacaaccagtgggtcacagatgaaattaaagacaacattag----TTTCTACAagtaaatgataatgccagtgcAACATATCAGGACTTATGGGAcagaatgaaagcagtccta-gagTGAAATTTTTAGCGGTGAGCACTCATGTCACAAAAAATGAGCAagctcaaacaaaacaaaacactttaatGTTGCACCTTGAGCttctagaaagaaaagaa-caagtcaagccca---------acaaaagaaaattataaagatcagagcaaaaattaatgcaactgagactaagaaaacaatacaaagaatcaatgaatcaaagagtt----ctttgaaagattaaataaaattgataaaacccttagctaaccttatcaaaaaacgAAAGATGCAAATcc----------atttaggaatgaaaaagacGAAATCACATCAGATCCTGCAGGAATCCAGAAGACCATCTATCCTTACTTCaagaacctgtactctaataagatgtaaaatgcagaagaaatggatagattcctagatatatatgagttg----agctaaatcaagaagatataaaatttctaaataaaccaatatcagtcaatgaaattgaagatgtaattaaaaaaccTATCAAAAAATCAAAGCCCAGGCTCTGATAgatttcactgctgaattcta-caaaaatttgGAGAGGACCTAATACcacttct---taaactctttaatgaaactgaaagggaagcactattcccaaattcattcctggaagcaagaattaccctgataccaaaagcagacaaagacccaactgagaaaaaaatcctaCAGGCCAatt--------gaacataaatgcaaaattcctcaataataT-ATTGCAAACAGAATGTaacaattcatcaagaagattatttaTCATGACCAAATAGGACTCATCCCAGGGGtgca------------tatac--aaatcaataaatgtaatacaccatattaacagagccaaggacaaaaatcatatgataatCTCAATCAATGCAGAAAAAGTGTTTGACAACGTCTGACACCCATTCATGGTAAAacccctacagaaaatcagaatacatggtctttatctgaAACTGAT-AAAGCCATCTACTATACATCAACAGCCAACATcctaataaatggacaaaaactgaaagctttcactctaaaatca-ggacaagataaggatgtccactg--tcacttcTCATTCCGTAAGGTTCTGGAAACAGTGTGAGCAACTATATaagagagaagaataaaagaaataaatgtaaaaaaaggaagaagtggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccgataaaaattaaaaaaaaataaaaataaaaaaaggaagaagttaaattatcatgatttgTAGATGATATGATGCTCTACACAGAAGCAACTAAAAATTATACCAAAAGACTTCCAGATTTCATAATCAAGTTCAGCAGTGttactggatacaaagtcaacattcaaaaatcacttacatttaagtgtgtaagatagataatcatactactaagtttttgttggatcatgagCAGAATGGTTTTGCACTATCATTGTTTGACtgcccactttttatgctttgattttgtaacttgaacaactatttctaagatgacaatatgcaatgtatcaactagtgatttcttagtgttattattttttttgatattctgtattatttctacccttttctgtaTAGCCTTCAGGTACAagaataacaaactcacagagagagtaAGTATGAAA-------CTTTCACAATTATATCaagaagaatgaaatacttaggaaatcaatctaatgaaggacgAAAAGGGCCCCTATGTGGAAAACTATAGCCCTCTGAAAAAGaggattgaagaggatattagaaaatagaaaggtatcccttgctcttgggtaggaagaaccaatatagtgagaATGGCCATAATTCCAACATTGGTATACAGGTTTAATGCTATCCTGGACAAAATTCCAACAgtatatcttacagaattagagagaG-AATTTTCAGAATTATCAGTTCATTTGGatccaaaagagacctagaatagcaaaggcaattctgagcaacagaGATAAAA------CAGGGAGCATCACAAgccctcacttgaaattatactaaaaaccTAGTATGTTAAAAATAGCatagtaccacaaaataaaacaaaacataacaaaccaaacaaacaatattaaaaaaaaaaaaaaaaacagatctgaggaccAGTGGTATAGATTAGAAGCTGCAGAAGCAACTCCAAAC---------------ATACTTACCAAGGAAGGTATAAACACCT--TTGACAAAGGTGTTTATTGAAAGCCTATTcaataa--aatgctgaaaaaactggatttctacatgctgaagatttaAAATTAGACC-TACATCTCTTGTTG

a score=6805
s chr3             7219000 597 + 160039680 CCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAG-AACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAA----CTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGA---------CAGAAAAAAAC-------CAATACAAGAACG------GGAAC-AACGCCCTAGA-AAAAACAAG--AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAAT-GCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT
s HiC_scaffold_1 229214006 588 + 233722169 CCAAATATTTATAGTCAGAAAAAAGGTTTATCTTCAGCACATTCTTGGCAAAATCCTAGGAGT-CCAACAAAGGACAGGATCTTAAAAG-ATTTAGGGAATAGTAACAGCTCATTTATAAAGATAAACCTATTAGAATTACAGCACATTTCCAAAGAGAAACCATAATGGCCAGAAGGGCTTGCAGAGAAGTGTTTTAAaccctaagagaaaaaaaaattacaaatcacATTGATATTCTCTGCAAAGatatctttcaa-------------------------atttgatgaCAA---CAAACACATTAGACAATTTAggaccaaaccagcactccaaaacaTTCTGAAGGGTGTCTTAGAGAAGGACAGGCTTGCAATGCCAAAACGTTTAGTGAAATGAATGTGTCAGATAGGGGTCAGTTAAGGTGA--CTGCATGAAGC--AGAAGGAGCC--------GAACAGACTCAGCACCAGGTACCAGTGCAGTGACAGGGCTCAGTCAACACATTGCAGGACTAAGTCTCAAAATGAATGGTCCCAACTCCCCACTCACAAGACACGGATCAGTATACTCAACCAAAACCCAAAACTTAACAATGTGTTGAATGCAAGAACTACATTT

a score=85920
s chr3             7219012 3628 + 160039680 GACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAA---AAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAA-----AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTG----------GGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA--------TG-AAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGG-----ATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-------CATCTAAAAGCTCTAGAAAAAAAGG-------AAGC---AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGT--TCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatata-agtgaccctaaaaattccaccagagaactcctaaacctga-taaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataa---aaactgcatggtactggtata-gagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa-cagca----atggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtg
s HiC_scaffold_1 218598417 3569 + 233722169 gaccaaaaaaaaaa--------aaaaaaaaactcccagaAATTCAGA--------ATAACAACACATTATTAAAacctgtaagagaaaagaaacagaatacctacaaagaaaagtccaCGAAAATCACATAAGAATTCTCTACACAAATCCTCAAAtgaagaagagcttgaa-----gtactTCAAGTCTTGaatgaaaacaacttccaacccagattgatgtagcctacaaaactatctttgacaactgatggagaaatgaaacacatacatgacaaagaacaactaaagaaattcatgtctatcAAGTCAAACCTCCAAAGAGTAcggaaagatattctagacagatacaaaaatgaccacaattccaagaacaacatcaGAAAAAAACCACCCACAAAgcagagcaagcaattaaacagaggaaacAACAGGGAACCAACAGCAAAAAATAACGTGACAAAGATAACCCAAtacatatcacttataaccattaatgtaaatggcctgcattcaccaatcaaaagaaatatattgGCATAATGAACCCAGAAACAATATCTAGCAATAGGctgaatacaagaaacacatttaacttaaaaaagaaactcatagactgaaagtgaaaggacagaaaataataCTCTATGCAACAGATAGGTACCCTGAAGacagcaggggtagctattctatttgcagacaatgtaaacttcaaaccaagaaagatcaaaagagataatgaaTGTTATTATACACTTACTAGgtg-aaaattcaagagaaagagataaaaatcataaatatatatgtaccaaatatgggagaactaaactatgtaagacaaatgtcaacagacatgaaaaaaa-----------taagcaataacaatgaCTATAACAGGGGGACTTTAATACCACATTGTAAC-Aatagatagatcaattagacaaaaaaaaaaaaaaacagcaaagaagc-aacagaattgaaccaaacttgtaaataaatggacttagtaaactTTTAAAGAGTATttcaccataaaaaaaaaaatcttaattcacatgcttctcagttgcacatgggccattgtctaaaacagaccatatactaggccatagaacatgcttaggtaaatgcaaaggaattaaagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCA------GGAAAACAGCACATGC--ACAAATATACAACGTAATGTGCATCTGAA--CTTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaa-agaaagaaaagactcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaaga---aggta------taaaaagtTTGAAtaacattaatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaat-aaatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaa-aaagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaatacaattaacatatcttacagatctagaaaaaaacat-------tccctttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaaagtc----tttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtca-----aaatggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTCA-----ATAGGGGTAGACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttcaa-----agaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=33080
s chr3            7219055 2425 + 160039680 CAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATT-CACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAA---AAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAAC----CTAAAAGAAGAC--------AGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTA---------------CACAAACAAGACCCA------------------------------------------ACATTT----------------------------------------------TGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGG-ACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA--GCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAAAGGGCACA------GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT-----------------GAAGAAATCCAAAAC-----------ACCATCAGATCCTTC----------------------------------TACAAAAGGCTAT-----ACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAA---AGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagta----gccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaag
s HiC_scaffold_1 77435158 2503 + 233722169 caaaaattcaaaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaat-taatgaaaaataaagacctCCCTTGATAAGTGTAAATTATAGACATT-TATGACCCCTAATCCAGCATTGCAGAAAATACTTAAGTTAATcttaaacacagataaaaaagagaataacaat-tatgagaccaaagaaagaaatgtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCA-AATagtagaa----------aaaaaacaaaatgataggaattagTACATACCTTCCACAACTATCA--TAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG---ACAG--------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAATATAC-ACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaaagaaaa------------------cacatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaa----aaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaa--------atattttaaaaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTGTTA----ATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=46474
s chr3            7219097 2639 + 160039680 AAAAAGGTCAAGTAAC---ATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGA-----TAA---------TGACAGAAAAAAACCA----ATACA----AGAACG-GGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAA----CCTAA--------------AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGA-----TCTTCAATAACAAAAT---AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGC---CTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCAC-AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC----AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCA---------------------------------------------------------AGAACACA--------------------------------------------------TTAAAGCAATCATCCATC------------------------------------------------------------------------------CTGACCAAGTA---------------------------------------------------------------------------------------------------------------------------------GGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacaccctt
s HiC_scaffold_1 66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatat-aaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCTGGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAGCTAAAAACACAGAACAAC----TAGTGAAATCAGTGAATaaa--catcaacaaagaaacataaggaaaagaaaaacaaaggatacaccaacataaaaagaaagc----------------aatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagata--------------atCAAAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACAC--------AAGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAAT--AAACACTAACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagtt-cgAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAAA-----GAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaa-taaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaaga----aaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=48850
s chr3             7219146 3751 + 160039680 TTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA---------ACCAAATTCACGCATTATCTCTCCACGA-----------ATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCA-ATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTT---TTCCT----TAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTT----CCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACC--TTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAA-CACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCA---CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACT---CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTC--CCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGA--TGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG---------ATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAa--tacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaa-gctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatata-aaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgt----atgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatg--------aacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa---cagcaatggcttgtgct------------gtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatct-ttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtggga
s HiC_scaffold_1 228955059 3395 + 233722169 tttattttcaaaaattctgaCCAATACTAAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACA-ATCATCAAACTAGGACTACAAAACATATTCAATCCTACACAGCA-----AGAGGGAAAAACTATGAAAAAGGATAGACTCAATAAT-TAATCTAAATGGGAGAGTTGTttcacaagaga---gaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaatt--aaaatgataT-CTATGTAATAAGTGTGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATACTCCTC----------AAATAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT--ACC-CATATTGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGGGAAA--TTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAGG-TCAATGAAAAAAAG------TTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAGATGATAATAGGCCAT---GAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTTCCAAAAGCAatacaataaatcaataaa--------------tgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgt-aaagagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCCA-CAGAAGACTCTCAGAACTAATAGATAAATTCAGCCAAGTG---GAATATACaaattaatacacaaaaatcaagaacattacccaaagtgatatatatata---------------------------------cttaataa----aaataaattgaaatatc--------------------------aaagtttttttttcataacTAGAAAGTCAAGTCT-------------------AAAATTCCTAGAGA-----------------------------------------------------------ACCAAAAGAGACCCA-----------------------------------------------------GAGTAGC------CAAAGCTATCCTgagcaacaagaaaacaaaca-aacaacaac----------aacaaaaaaaca---ggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACATAGGGGAAA-CACAGGACCCATAGGCGCA-GGGAAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaagaaAA-----TAATGAGCCAA------CTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACT---CAACAGGTGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=82203
s chr3             7219203 4163 + 160039680 [encoded data, 4676 characters]
s HiC_scaffold_1 130105087 4470 + 233722169 [encoded data, 4676 characters]

a score=59646
s chr3            7219218 4052 + 160039680 [encoded data, 4684 characters]
s HiC_scaffold_1 33891657 4431 + 233722169 [encoded data, 4684 characters]

a score=42731
s chr3             7219229 2632 + 160039680 TACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCAC-GACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAAC--AAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAA---------TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGA-AAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA-AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTA------GTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAA------------ACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGC---CAACATTCACATGGAAACTGAACAACA----CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-------------------------------------------GACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCTTT---------GGGACACAAT---------------------------------------------------------GAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCA-AATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATC-CTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTA---ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccc-taaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag--tcacaaataat--ataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctga----agaaagaaattaaagaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAAATTTTGAAGACCACTAAGTGAGCACTACAAAAG-----TACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAACATCAAAGAGACTAAAGGAATGAATACATTAATCA--TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCATCAATAACAGGTACAT------TGAAAATTagatgatggaaaacaatacttcatgcaa-tgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAATACTGCTGCACATAGAGGTCAGA---TAAACAGC----CACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCA-----------ACTGGACAAAACTAT-CAGCAAAGAATATGAGAGTTGAACTATACCTCTGAACAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaacca-tGGCAAAG-GAATCACAGAATTTTCTCAAC-----CATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatggataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca-gaaatatagca---------------ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAGT------------GGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACC-TTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=49285
s chr3             7219415 3213 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCA---AGAGGAACTCTCAATTCTGAATATC---TATGCT-----CCAAATACAAGA----GCAGCCACATTCAC-TAAAGAAACTTTAGTAAAGCTCAAAGCACACAT-TGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGAC-----AGATCATGGAAACAGAA--ACTAAACAGGGACACACTGAAACTAACAGA-----AGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA---AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACC--AGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTA----TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaa--catagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttac--ctatcctaaatcagataggggactaatatccaacatatataaagaa
s HiC_scaffold_1 216972207 2954 + 233722169 AAAGGAACCAGCAACAGGAACATAATGAAG------ACAATTTCAGAAATAGGTTG--ACATCTAC----CAGTAATATCTCTC----TAAATGGTGCAAAATCCCTAATCAAATGA----GATTGCTgttgtggctgaaaagataaagcTGTGTGGTATGCTCTAAACAAAAGACACAATTAATCCAAAAATACATTCATGCACTagaaatagaagaatgaaaaacaatattctatgcaacTAAAGCCTAAAAACAAGCAGGAATAGTTATCTTATTTTCACA-AAAAGTGCATTTAaactaaaactgatcagaagagggaaagaaaaacataGC-TTATTGGTTATGGCAAAATTCaacatatatatgttatatatgttttatatattatatatgttgtaTACCATATAtgatattttgcatatatatatatatatatatatatatatatatacacacacacacatataccccTCAGTcacacataa-----------aacaaat-------attactggACCTGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAa-tattagttatttatttattgaacaaGTGGAgctaatagatatctacagagtgttccattcaacaacaaca--acactcaTTCTTCTCAGTAGCCCAAAAAACTTTCTCCACAATAGACCATATATCACCCCACAAAGCATGGTT-AATAAATACAAGTATCTGCAGCTTAA------------ATCAGATTATAacgcaatgaaactagaaatcaagcAAAAAATCAGAGATATTATTCAAACAT----GAGgacatgaaataatacatttt--aataatcaGTCagccacagaagaaatcaagaaagaagttAGAAAGCTCCTGCAATCAAATGACAATACTGATATGGCGTAACATATCCTGTGG-ACACAGTGAAAAAAGCCGTAAGAGTGACTCTTACAGTTATGAATA--TTCATGTAGGAAAAAATAGAGCAATCCCAGACAAATAACCCAACGA----------GGTCCCAGATAAACAAGAA--CAATTCA------------AAGCTTctataagaaatgaaattaaaaggatgagATTGG--AAGTTATGATATTGAGaatga---aaaaatacaacaaattgaagatctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTTACCAGA---------------------------AAAAGTTGAAATTAAA--------------------TCTATCAAAGTCCTCAAGATCATTAACAACCTCTTTGAAAGTAAGTGCTGCATTAAATTGGAGAATCCAGATGAAATAGATAGATTtctagatatatatatacattgccAAAACgaaaccaagaaaatataaaagctgTGAATAATTCAATAACAGGCAataaaattgaagcagtaatgAAAACTT----------------------ACCTGATAGATTCATTGTTTAATCCTACAAGAACTTCAAGATGAATTTAACgccaatactttttaaattttttaatgaaaccaAAGAGGA--GTACTCT--TCAAATCATTTCTAGAAGATAGCACCACTTACCCTGATTCTAAAACCATTCTAACACCCAAGTAGGAAAGAAAACTACAGAGCAATCCTTTTAATGAACATGAATGCAAAAACTTCCAACAAGATTCTGGataaacaaat---------catcaaaaacattGTTTATCATAACCAAAATGGCTTTAGTCTAGTGATGTAATGGTGg-ccaacatatgcaaatcaataaatttaatagacaacg-aaacagaagcaaggacaaataTCATATGATCATCACAACAGA-----GAAAAATCTTTGAGAAG---TGAAACACATTCATAACAAAAACCCTG--AAGATCta---------------atctcaatctgataagagcCAATTCTGGTAAACCTTctgccaatatcatactaaaaggGGGAATGCTGAAAGAATTCCCTCTAAAATTGcaaagaagacaaggatgtccg----------aCAGTTTCTATTCAGTGTACTCAAAACATGAGCTAGAACAAT----CAAGagaagaagataaaaaagaaatgtgtgggaaagaaagaagtc---atgttactatttgcagatgactcgATCCTTTATCTGAAAGACTCCAAAAATTCCACT--AAGATTTTTAGAACTGATAATCATATTCAGCAGTACAGTAGGACACAAAGTTAACATACGAtaatcagtagcatttctgtgCACCAATAACATactcacagagaaggaa-------aaataataccattcacaacAG-CACTGAGAAAAAGTAATA-------------CTTACAAATTA--------ACCTATCTAAAGAAAACTAC-AGCTTctgaa-aaagagattgaaaagaaTACCAGA-------------TCACTTTTTCCTAAATAAGCAGAACCTATATTGTTGAAAATAATCACACTTTCAAAActcatatataaatttaatttattcccAATAAAAATGGGagcagcattcctcacagaactagaaaaa--aatcctaaaattcatttggaaccagaagagatccagcatatcaaaagaaatcctGGTCAACAGAAGGAAATCAAAAGCCATCA-CACTCcagatttcattttatattgcaaagctacagtgataaaaacagtattctGTTGGCATAAAG-CAGGTATGTAGGTCAGTGAAACAGAG-AGAGGCCGCAGAAATGCCCCGAGGCACAttcagccatctgatctttgacaaagggaccaaaaaatTACACTGAAGAAAAGATAACCACTC--ACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGA--------------CTATCCCTCACCatgcagtaaaataaa----aagtagattaaatatctaaatattaaaacagaaatctgTAGTCCATTAGGAGATGAACTAGGTAAAA--CTCAAAGATACAGGACTAAGTAAGGATTTTCTGAGCAGAACCCAAgttacacaagaaataacattaagaatcaataaatgaggtTACATCAAATTC--AAAGCTCTTCACAGTAAGGAaaaccaccagcagagtgaagagtcaatgtacagaatgggaaaaattttatcCAGCTACTCC---CCAGACAGAGAACTATTGTTCACAATATGTAATGAA

a score=10617
s chr3            7219450 1149 + 160039680 AACAACTAAAATAACAGGAAGCAACAATTACTTTTCCT-----TAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA---GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACA--AGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATT-GCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTA-AACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCA---AAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAA--CAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAAT---AAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-----------AGAAAAAACGGGAGAGAGC-------ACATACTAGCAGCTTGA-----------CAACACATCTAAAAG-----CTCTAGAAA----AAAAGGAAG-CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC--GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT
s HiC_scaffold_1 20106840 1122 + 233722169 AACAATTAACAAAAT-GACAACAGTAAATTCTTTATCTATCAACAATTGCTTTAAATATCAGCATATTTAATTCTttaatcaaaaggaaaagagtggctaaatggata---aaaaagtatcCACACAAATACCACCTGCAAGAAATTCGTGTCATCTATAAAACATGTAGAC-TTACC---AGATGAAG-------------TATTTCATGCAaata--aagcaaaaggaaacagGGGAAGCT-TATTAGCTTCAGATAAAATGCACTTCCAAGC-AAAATGAT-AcaagaaactaagaaaatcaTTATAGAATGACTATAGAGACAATTCATCAAGAGGA-TGGAAAACTGTAAATATATAGGTACCCAACATTGTAGAATATGAACATGTA-------AATATTACTAGATCTGAAGAAAAGTAATAGCA----ATACAGTAACAGTAGGAGACTTCAATAGTCCACTTTTACCAATGGATAAATCATCTTTACAAAAAACACAATAAGGTAATTTTGGACGTGACCTAAAGTTTAGACCAAATGGGcctaatagacatatacaggatatTTCACCTAACAAAAGTaacatacacattcttttcaaattCCCATAAGTCTAACTCCAGTTAGATTG------TGTTCAACTACAAACCA---------AAATC----AAGATTTAAGTCATATGAAACATGTTTTCCAATCACAGTGAGATGTAACTAGGAATAAATAACAGGGGAAAAAAACTGGGAAAATCACGAATATCTGAAAAT----CAACACAATCCTGAAAAATCAATGTgtcaaagaacaaattaaaaggaaagaaa--aaaatcttgtcaCA----AGTGTAAATGGAAACACATCATGCGAATAC---TGGAATGCAGGAAAAGCATTTCTGAGAGAG---TTTATGGCAATAAAAATCTACACAGAAAAggccaggaaagaaagaagaaagcaaggtgaaaagaaaagaagaaggaagagaagatttCAAACTATCTAATATTATACCTTCAGGAAGTAGAAAAGGAAGTCAAGCTAAcaccaaagggg---------ggaaaaaaaggatgtTAGAGCAGATATAATTGAAACAGAACtcagaaa----atcaaatgaaatcaacAAACCTAAGCAGTGGAGATTctgaatagataaacaaaatttaaaagtc--taaTTAGACT

a score=35014
s chr3            7219480 2522 + 160039680 CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA----AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCAT-TCTCATCAAAGGTAAAA--TCCTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCAT--------------------GGAAACAGA----------------------------AACTAA--------------------------------------------------------------------ACAGGGACACAC---------------------------TGAAACTAACAGAAGTGATGAAACA--------------------------AATGGATCT-GACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC--CACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagca-----atctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagta---gctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattca
s HiC_scaffold_1 42973449 2236 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTT--ATTA---AATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagaca-GAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTA---TACAACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaaca------aaaccaaactaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgg----------------------------ggagaatcatca----------------caagtttgaggtcatctt------------------------------------------------------------------------------gGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAGAC--TTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTAAA-AATAC------TCcaggaatcaacctaatgaa-caggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaa-aatcaatactaaaacTCA

a score=81808
s chr3            7219494 3779 + 160039680 CTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAA--AATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTA-----AAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCAC--------------CTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTC---TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaat---agtca-caaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacaga-ttcaatgcaatccccattaaaattccaactcaattcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaac-----ccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatc--gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactg-ggaaaggatct--ttacctatcctaaatcagataggggactaatatccaacatatataaagaactc-aagaaggtggacctcagaaa----------atcaaataac---ccccttaaa-aaatggg----gctcagaa----------ctgaacaaagaattctcacct------------------------------gaggaataccg--------------------------------------------------------------------------------------aatggcagagaagcatctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagcc---ccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgata
s HiC_scaffold_1 75496062 3772 + 233722169 ctctcaatgtgaatggtccTAATTCCCCaatgaaaagacacagattggcagagtagatcaagaaacaaaactcaaCAATGTGCTATATTCAAGAAGCACAATCcaaaaagaaatgtacagatta----AAGCTAAAAGGATGAAGAACAGtgttccatgtaacaggaacccagaaaaaggtaGAAGTAGCTGTCTGAATTTTAGACAAAATGGACTTCAAGACAAAACTGATCCAAAGAAGCACAGAAAA-----------TCATTATAAGGAagcaattcaacaggaagagctAACAGT-ATAGATATACATGCATTGAACACTGACTTGTCCAACTTTATTAAACATACTAtgggacataaaagatcaga---taaacagcG----ACACAATTATAGTGGGAGACCTCAATA-----------------gtcagatcaattagacaaaaaaatcaacaatgagatATCAAAGATGAACCAAATCttcaaacaaatgaatttaaCAGTTATctacagagtgctccatcc---aacaGCAGGATACATGTTCTCAAAATCATGTGAGATGGAAAGTCACatgagactttctccaaaattGACCACATCCT-GGCTTTAAATCATGCCtaagtatatggaaaaataatctaaattttaCCATTCATATTACCaaatcacagtgcaatgaaagtAGAAGTcaagagcaaaagaaaccacagaaa------------------attaaACCATATCCTCTTGAATAATTGAtggttcacagaagaaat---taaaaatattagaaagtttttagaaataaacaataataccaTTACAGCATACCAGAACATATGTGTCACAACGAAAGCAGTCCT--GAAGTAAGTGGATAGCtctgaatgcccacatcagaaaaacagagcaagttcaAATACATAACCTAGTGTTACACTCCAAGGTCACAGAAAAACA--ACATCAATCCAAATCCAAAGTTAGTAcaaggaataaaattataaatatcagaacagaaatcagtgacattgaaactttgaaaatta--caaacaatcaacaaatcaaagagctggttctttgaaaaaataaaca-----gacaaattcCTACTCAATCATatcaaaataaagagagaaaagatcCAAACCAATCCAGTCAGatacaaaaaaaggcaaaatcacagcagacattgctgaaatccagaagataatTAGCAATTATTTTGAGGatctgtattttaataaattggAGAACTCAGAAGAAGT------ATGTCCCTTACATGCATGTGAATGACCAAAACTGGaccaaga--aaatttaaataccCTAAAATCCAATAACggacaatgaaattgaagaaatgaaaaa----ctaccaactaagaaaactTCAAGTCCCAGTGAGTTGactgctgaattctgtaagaacttTGGGGAGGATCTAATGCCAAAATTCTTTAAATCCTTcagtgaaatttaaagggaagggATACTCCCAAAGTGACTCCTAGAAGACATCATTATCCTTTTTCTAAAACCAAGAAAGGACTCAACTAATAAAGAGAAGCACAGACCAATCTCTTCAAAGAACATCAATACAAAAGTTCTCAATAAGATACAGGCAAACaagatgcatcaaatcatcaaaaacATCATATATCAAGTATAAGTAGGatccatcccaggaatgcagagatggttcaatat--------------atgtaataca--acacaaacagaagcaaggataaaaaacacattatcatctcaattGATGAATAAAAGCTTTTT--CAAAAT-TAACATTCACTCATGACAAAAA-CCTGGAAAAAT--AGTAATAAAGGATCTtatatcaatctgataaaagccatttatgacaaaccc-tGGCCAAC--CATGTTATACAGAGGAAAATTG--------tcctttaaaatcagaaagaagacaaggatgcCTACCATCACCATTCTCATTCAACACAGTTCTTGAAATATTATCCAGAGAAATCTAGcaagagaaacaatgaaaagaGATCTCTATAAGAGA----GAAGTCAAATTAATATTATTT-CAGATGATGTGGTCCTCTACATAGAATCACCAAAGAATTTCACTGAAAACCATATAGCATTAATTACCAAATTCTGTAGAGTAtcagaatacaaagtgaac----aaaattcaa---cattcctatacacaaataataaactcatcaAAAgag-aactaagaaaataataccattcacaatacaattcattaagaaaaattaaacatttaggaATTGACCTAATGAAGAAAGTGGGACACCTGTACAagaaaaactacagtattctcaa-aaggagatcaaagaagacatcataaaatggaaagacaacccttCTTCCTGAATATTCAGGAT--------TCAAAATGATCATTTTTCCAACACTCATACACAGGTTTTaacacaatctcaatcaaaatgccaacagcaCTCCTCattaaaccagaaaaaaatactactaaaattcatttagaagcagaagagactcagaatagcaaaagcaatcctatgCAATGAGAATAAAGTGGGAGGCATCACATTCctggacttcaagttatactgcaaagccatattgataaaaacagcatggtactgaccaaaaactgaatatttgaatcaatagaacagaataggGGATGCAGAAACAATTATAGGCAACTCACCTAT------CTGATAtctgacaaagaagccaaaagcATACACAGATGGAAACATAATCTCTTTATCAAATGGTGCT-GCTTAGCCACacatt-----------------gaatctagacccatgtctctcatcatgtagtaaactaaaatcaaaacagttcAAAGTTCTAAaggttaaaatagaaataat----ctgctggaagataaaagagGTAAAACCCTTGAACACA--GGTGCAAGCcaggactttctgaatagaaaaaaa-------------taattccaagaatcaacaaataggatcatataaaattaaaaagtttctgcatagaAAATTAagtaaccaacagagtgaaaagataacctttggaatgaggaaaatattctgttaaatatttt---tcagacaaaagactgatatcaagaatacataaagaactctaaACAATTAGATCTCCACAATTGAAGACTGATCAAAAAACAGGCAGCTGAAATGAATGGGCACTGCTCAGAAGAAGCATAATCTGGATACAGGGTGCACATATTTAATCCCAGccctttggagactgaggcaggaggatcactgtgaactTGAGACCAGCCAGGCCACATAGTGAATTCTAAATCTGAATTATATAGGGAAATTacctaaaaatgattttttaaaagtaaaatggccaataaatacatgaaaaaaatgtttaatatccctgattattagagaaatgcaaattaaaacaacactgagattttacttTACCCTAAATAGAATGGATATCATGAAGAAATCAgataatagcaaatgctggtaAAGCCATT----AGGAGGAATATTTCTACATcattgatgggaatgtaaattagtacaaccattatggaatcCAGtacaaaaattcttcaaaaaattaaaactagaaattccgtttgacccaactattttccttctaagtattttcccaaaagagtcaAAGTCATCATAGTACAGTGATACACAGATATCCATGATTATAGCAACA----taataacagctaaatcttggaggcagcctgtatatccatcaacagCTGAATAGAT--aacaaatacagtatttatacacaatgatgTAGTACTGTGTCATAACAAAGAATAAa--caagtcatttgtagaaaaatggatacacctgGAGACTATAAtgctaaacaaaataaaccagacatacaagtttaaatatcacatgttctctcttata

a score=26597
s chr3            7219502 1820 + 160039680 ATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATC----TCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAAT--TTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA----------CACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAG---------------ATTCAAAAATATTGAAATTGTCCCAT--GTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGA--------AACTGAACAACACTCTTCTCAATGATACCTTGGTCAA----GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA--------CAT-CTAAAAGCTCTAG---------------------------------------------------AAAAAAAGGAAGCA----------------------AATTCAC----CCAAGAGGAGTAGACGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG--TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGG
s HiC_scaffold_1 89719555 2099 + 233722169 ataAATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTA----AAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaa----atattgggcataaatattaaaaatacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTCTCAAG----CAGATCAACTAGCcaaaaattaaccaa--aaatatTATAGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaaatagacAAAGACTCAGACGTTTGTTAAGTATCCAAAACACCT---aatgaatcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAATAAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=74860
s chr3             7219523 3720 + 160039680 ATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCT--AAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTA-----ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG----ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTA--ATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta---actcaaacaag---tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatg---------gaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatat------gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaagg--tggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattct-cacctgaggaataccgaatggcagagaagcatctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaa--cacaatcacaa
s HiC_scaffold_1 110855274 3525 + 233722169 ataCTAAAAACTAGACTGGAAGATTGGAT-CAAAAACAGAACCCAAGAGTCTTCTGCATTAAAGAAAC--ATATAATCAAAAAAGACATTCATAGATTAAAcattaaaggatagaaaacaacttTTCATGTAGCATGGCACTTA-AAACAAGCAGGGTTAACAATTTTAATATCAGACATTATAAACT-CAAGCTAAAATTGactagaagagacaaagaaggtccaAACATACTAGTGAAGAGAACAATCCCGCAAGAAGAGTCAACATTGATAAacacatatgcaccaaatgcTAGAACATCTATTTTCATAAAGCAAaaactactgaaattaaaaagtaaaataaacactaGCACAATCATACTAGAGACTTTTAATGTCACACTTGTATGAAGagtcaaataaattaaatataaaacaaacaaataaatgtcaGTTATACCACAACT--TTGAACACATGGATTTAATTCATAAATACAGAGTATCAGACCCTGTAAAACAAAA---TATGCATTAGTTTCAGCAACATatggtacattttataaaatagatcacatactagcccacaaaaccttcttaaataaatataaaaagaatttaaattactcCTCTAATGCTATCAGA---ctgtgaaaagaaaatagaaatcagtgacagaaaaaatttcagaaatgcaaaatttCC-TAGAAAGTTAACAAAATACTACTCTTCATCCAattggtcacagaagaaat-----------ttcaaaaattctgaAAGTT-AGTGAAAATGACTGTAAAATTCAATGAAACATCTGGGACActattaaatcaattctaagataaaatattattgtaatCAATGTTTATATTGGAAAAATAGAGCAAGCCAAAGTAAACAACTTTATTAGAAATCTTAAGATACTTGAAAAATAACAatccagt--acaaaacaaaattaa--ggaatgaaatTATAGAgattagagtagaaatcaataaacttgagacaaaaataactgt-aaaaacattaaaaaatcaaagagcttgttctttgaaagaatacatgaaatagataaGCCTTTAGCTAGACTCACCAa--gactaagagaaaaaaaaatacttatattAAGAGAat----------aaaggtgaaatcacaacagttTT----GCAATCCAAAAGAtcgtaactactttg---aaaaatttataatccaaaaaaataccaaattttgAAGAA------------CTGGTCACATATAAACTTCCAAAACTAAAAAAGATGTCATAAATTTGATTGATAAACTAGAAATAAGT-----ATGGAAATTGACTAAGCAGTAAAAAGTATACCAACTAAATATAGCCCAGGACTTGATTGATTTATGACTGAATTCTA-CAGTTTTTTAGA----ATGTTACATCAATACTCTTcaagattttcaaagaaaataaaggaattggAGTACATCTAAATGCAATTGTGGAAACC---------CTGCTACCAAAACTGGATAAAAACCCAACTAGGAATGGAAACTGTAGGACTGTCTTCTTACTGAACACAGATGAACAAATCTGCAATAAGATATTAGCAAATTAAA---ATGAGCACATTATCAAAAAGATGATACATTATGATCAAGTAGGTTTTATTCCAgagatgcaagaatggttcaataTATATATAAGTGCACAAATGCAATATATAACATAAG-AAGGAGAAAGGTCAGGACCATATAATCATATCA--AGATACAGAGAAATCTTTAAACAATACTCAATGTCTCTTCATAAACAAAACCCTGAAGTAAATTGGTATAGAAAAACCATACCTGAGTGTGATAGA--CTATTTATAAAAAACCAATAGACAGTATTGTACTAAATaagaaaaagctgaaaacatTCCTCTTAAGTTCaggaagaaataaatgatatTCACTATCAAT---TCTTGTTAACAACTTActtgaaatattatttgaaacaacgaagcaaaacaaagaaat-aaagggatacatataggaaaagaGGAACTCAAACTATGATTATTTGtagatattaaaatattgtgCAGACAATACCCAAAGAAATCCA-CAAAATACTATTTGAATTAAGACA-AACTTTAGCAAAGTAGCAGGATTTaagataaaacacaaaaacaaagattCGTTAGCATTTGTGTATACC---AACGagtgggaagagaataaaattatgacAAAAATACCATTCAtagtagcttcaagaaaaatgaaatatctcaGAATTAACCCAATAAAAGGGATGAAAGA-CTTTACAAAGAAACCCATAGTACTGTGAAGGAGGCTCTTGAAatggacatcagaaaatgaaaaaaaaaaaaaaatcccct---cttCTGGATAGATAGAACCAgtattgtcaaaatgaccataattctAAAACTGTTATATGCATTCAATATactcctaatcaaaataccaacagaatAATTTacagatctaaaaaaaa-aacactaaaattcatatagagcTATAAGAGActgagaataacaaaagcaattttgggTAGTAAGAAAAAGGCAGAAGGCATAGTAATATCTGACTTTAAAC--TACTTCA-AGTaa-ggtgataaaaacagcatgacattaaaacaaaaacagatatatGTCTCAATGAAACAGAGGTGAGGATACAGAAACCTTTCCAAACATATTCAACTACTTGATCTTTAAAAAAGTGGCCATAAACACAAGTTGGAACTAAGACAGTTTTCTCAACAAGTGGTGTTAGTGTAACTGGTTATTGGTTTGCAGAGGATTGAAAATGGACCTTTGTCTCTCAccatacattaaattaaaatctaaatgcatcaaagttctaaacattaaaacagaaaagttaaacctactagaagataaaataggcaaatCACATGAAGACATACATGAAGGTGTAGGAAAGGATTTTACAAACAGAATATCAACTGTACAAGAAAGAGCAGCAAGAATTAACAATTGAGATTACATCATGTTAAAAAGCTTTGGTATAGTAGAAGA----GTcagtagagtgaagagaaaacctataAAGTGGGAAAAA---TTTACCAATTATTCCTCAgagagaggactaatatctaggatATGCaac-aactcaaaaatatttaaaccaCCTAAAG-------------TTAAGAAATGGGcccccaaaatgaagaaaatattttacagaggaagaaatacaaatggtaatcaaatatatgaaaaaaattttcaacatctctggccattagagaaaagcaaattaaggCAACAATAATATTCTATCTTTCTCCA------------AACattaagaaataaagcaatatcaaATGTTGGTGAAGct----------------------------ctggtgggaatgcaaactgaaacaatcattgtggaaatccgtatagagatttctcaaagaaattaaattagaaat------------------------------------------------------------------tatatgtatcaatattttaatggcaaa---atttgtaatagctaaatcctgggagcagcctgcatacagATTAACAG-gtagtggataaagaaaacatggtatctATATATAACAGAACACTACTTAGCAATAAAAGTGAGAGACCTGA-GACATT-TGAGGAGAAAGAATGTACCTGCAAAATACAgtgctgagtgaaataaaccagactcacaa

a score=57278
s chr3             7219540 2356 + 160039680 AACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCC-----AAAGTCATCAAAAAAGACAAGGAGGGACACTTCAT--TCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCT-ATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACA---AAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAAT---CAGGA---------TCAAGTTGACCTTC-------TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAG-ATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGG-ATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCA----TTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaag---------tcaaaatatcactttttgcagatgatatgat-agtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaatt-agggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctg-tatgat-aaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacatt
s HiC_scaffold_1 127990987 2277 + 233722169 AGCACACAGAATGTATATATAGGATTCAACAAAAtgatatatacaagaaacacatctcacTCTCAGGGATATATATAGAGACTG----AAATTTAAAGGGTGGGAAATGATATTTTAAGTACAAGGAATCATAAAGCAAGCAGGAATAGTCATAATTATATCTCATAAAATAGACTTTAAGACAAgatgaaaataattagaaaagatggaaaaagtcACTGTATAATCTC----AAGGAACAATACATTAAGAGTATATACCAATTACCAGTATATAATAGACCAAATGTCAGAGCATCCA-ATTTTATACACAAATGCTACTAGATATAGAG----AGATAGGCcccaatacaattataatgggtgACTTCAACACCCTACTCTCACCAATTGATAGATCATCAACACAAAACTCAATCA--AAAAGTCTGAGTTAAATTATAAT-ATAGATCAACTGgatttaatagatatatacagagtatt---ccataaAACAgctgcagaatacacattcttttgaTCAACACATGAAAGCTTtcctaaaatagatcatatgttAGGAAAGGAACAAAG-ATTAGTGGattcaaaaatg--gaaataatttcttgtatcttatttgatcataatggaattaaactagaaatcaacagtaAGAGAAACTCCAGAAAttatacaaacacatgg-aattGAACAACATATTATTGAATGAACAGTGGGTCAAAAAAGAAGTCAGaagggaaatttaaaagtttattaaattggatgaaaatggaaacacaatgTAGTAAGATCTGTGCTACAGAGAAAAGGAAGTACTAAGAGGG-AGTTCATAGCAATGAGTGCCAGCATGGAAAA----TAGAGATCACA----AATAACTTAATGATATATCTTAaggtcttagaaaaacaag-agcaaactAAGCTCCAAATcgtatagaaagaaagaaacagtataGATCAGGGTACAAATAAATCAACTAGAAACTAAAAGAACAATACAAACAGTCAATAAA---------CAGTTCTTCGCAAAGAtaagtaaaattgacaaacctaTAGTTAAACT-----aatgaaacagtgaaaacacccaaataaataaaactagaggtgatattggagacattacagtgGATATCACTGACAATCAAGGGATTATTAAGGACAATT-TGAAATACAATATGCcactaaatttgaaaaacaaggGGAAAACTGCATATTTTTAGATGCATATGACCTAAGAAAACTGAACTGACAAGATATAAAATCTTAAGTAGATCTTTGCCCACACTAACAGTAATAAG-----CAATGAAATTATAGTAA-TAACAAAAGCcttccaa-caaagaaaacccaggactggatgaattcactgctgagttTTACTGGTCTTTAAAAGAA---------CTAATGCTACTTGAACTATTCCATAATgtagaaaggaaaagaactcTTTCAAACTTATTCTACAGATCCAGTATTACCCTGCTATCAACATC-TAGCAAGacacaacaaagaaaagagaattagAGAGCAatatccttaatgaacatagatataaaaatcttcCACAAATCACTTGCAAATTGAATTCAATgacacataaaa-----tatatactatg-tCAAACTGGTTTTACTGAAGGGAATGCAAGGataattcaacatatgcaaatcaataaaggta---CAGCACATAAATAGAGCCAAGGAtttaaatcacatgatcatcgcaataagtgcaaaaaaaaaaaaactttgacaaaattcaacattccT------------TTTTGAATAAATAAGGTATGGAAGGATCatacctcaaaataataaaagttctaAATGACAAACTCACAGCCAATAC---AGTCAATGTACAAAAACGGAAAGCATTCCTTCAAAGTTCAG------AACAAGGCTGACTACTTTCACCACTCTGATGCAGTGTAGCACTAGACATTCAAatcagagcaatcaggcaagagaaagaaataaaaggtacacATGTAGGA-------AAGTTTTTTTTATCAAACTATTTATGTTTGTAGATGATATGATGGGTACACATATGAAATGCTAAAACCTTCACCAGAAGACTTTTAGAACTGATACATGgattcagcaaagtagcaggatataaaatccaCATATGGAAACCGATAACTtttctgtacaccaataatgagcTCTCTGAGAAGGAAATTCAGGAGACCAATCCGATTCACAACAGCCA-------------------------------AACTGAGGATATGAAAGAGCTTCCACAATGAAAAACTGTAa--catcaaagaaagaaattgaagaagcaCT-AGAAGTTAGAAAGATCTCTCAGGGTAAtggactgggaaaaaaaaaatt

a score=15642
s chr3            7219602 923 + 160039680 AAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTC--CAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT---TGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGA-AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAAGAAGAACT
s HiC_scaffold_1 87165018 864 + 233722169 aaaaaaat---cactgagtaaaaatcagagacagaaacaaaatt------aCATATGATGGGAACATGGCAAGAAGCCAAAGTTGCTATGCTAATTTTACATAAATTGGATTTCAAGACCAAACT----AGAAGAGGCAAAAAAGGTCACTACCTATTGGTTAAGAGAACAGTTCAACtagaagagataataattat-----tCAGTGTTCACTAAACACTAGAAAGCCCAACTTCATAAAA------CTACTGGATATAAAAGGTCATATAAATGC-----AAACACTTAAAATGGGAGACC--------CTACTGTCATAAAT----AGatca-----aaagaaat--atcagagttgaactaAACCT-----------TTGAATAAATAGGCTTAATAGGTATCTATAGAGTGTTTCACCAAAAAGCAACAGAATGCATATTCTTCTCAAGAGTACATAGGACTATCTCCAAAATAGGCCAAGTGCTAGCCCATAACATTCAcataacaaaatgcaaaattattgaaattattccatg-----tatgagatcatagtgcaatgaaactagaaaacaaTGGGGGA--AAACACCAGAAATTATCCAAGCATATGAAAATTAAGCAATGACttcttgaataatcaataggttgtagaagaaatcaa-agagaaattaGAG--TTCTTGGAATTAAGTAATAGTGCCAGTACAACATATTGTAACCTGTGGGCCACAATTAAAATAGTGTTTAGGGGGAAGTTTATAACTATGCAcatccacatcagaaaaacagtgaGTCCAAATA--AACAGTGTAATGATGTATCTCAggatcatagaaaaaaaaaagaacaaccaaATCTAAAGCTAATACAcataaggaaattataaagatcaggacAAAAACTAATcaagactaaaaacaaaacaaatt

a score=6797
s chr3            7219633 327 + 160039680 CTGGAAAACAATTTTCCAAGCAAATGGTAT-------GAAG---AAACAAGCAGGAGT--AGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAA
s HiC_scaffold_1 63812792 323 + 233722169 CTGGAAAGTGAT------AGAAAATGATATTTCTTTGGAAACCAAAGAAAGCAGGTGTGTAGCTATACTCATATTACACAAAGTAGATTTTAACTCAAAAATAGtaaaaggagataaagaaagtcattatataatgatagaggggaaaatccatcaagagaaaa----aatactatatatat------ccAACATCTGAGCAACTAAATCCATAAAATAATCGCTAAAATATCTGAAGGGAGA-GTTAAACTACAATGCAATAATAGTAGGGGACCTTAAGGACCCACTTTTGATAATGGACAGATCATCTAGACATAAAATCAATAAGGAAAAATTGGA

a score=40858
s chr3             7219667 2243 + 160039680 AAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGA-CAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTAC-----------------AGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAG-----------AAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-------CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG---ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCT-CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaa-------gcaatctacagcaaaccag-----------tagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtat--atataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggat--ataaaattaactcaaacaagtcaatggcct-------------ttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagt---------------cacaaataatataaa-----------------atatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatct-cagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctat
s HiC_scaffold_1 144250098 2217 + 233722169 AAGCTAGCTAGTTTAGCAATTTTATTCTCAGACAAAATAAACTTCAAGCTGAAACTGATCAAAAAagtcaaagaaggtcactacat-------------aaaaGTTTACAGAACAATCCAATACTTGAAAATGTATACGCACTAAATCCCGAGGCACTTGacatcataaaacaaatactaccgaacataaaagatcagatataCATCAACAAAATCACAGTGGATGACCTCGATACCCCACTTGCACAATGAGATCAACTcaaccaaaaatcaacaaaaaaaggTCACA--------------------GGAACAAACAGACTTAATAGATATCAATTGTAGTAGTACTGTAATAGAGTGTTCTACTCTACTGCAGCAGAACATGCACTCTTCTCAGCAC---acaggactttctccaaaatagaccacaga---GGTAATTTAT---------ATAAGTGTAAAAGACTTTAAATCATTCCATCTATACTATCAGATCTTTAAGcattgaaactaaaaacaaatcgTCAAAGAGACcatgagaagtttagaaactCCTGGAAATTTAACAACACATCCTTGAATAcccaatgagtcacagaagaaatcaaggaaaacaaTGGACAATTCT-AGAATCAAAGCACAATGCCAGTAAAACACATCAGAACA---AGTTAACAAAGAAAGTggtcctaaaagaaaaacatatttcagTTAACTACATCTAATGTGTAGTCACATTAaac---agtgagctcaaataaacaactttgtGATGACCCTCAAGATATTCAAAAAACAACAATTTAAGctcaaatttaatttaaagagagaaatcacaagga-----------cagaatagaaattaatgtaacgaagaccaaaaaaatta--caaagaatcaatgaatca--gagccggttctttgaaaagatatatATAAAAGACCCAGCCTTAGTTAAAcctaccaaagaa-agaaagaaaggacttaTATCAAtgcagttagaaatgaaaaaaaggtgTAAATTAAAAGAGACACAATCAAAATCCGAAGA-----TAGTAACTGCTATGAAAAGTTATACTCCAATGAGTATACAAATCCTGAAGAAACAGACAAGTTCCT------ATAATCATTACCAAAATTAaaccaagaaaacataaaaatttcaaacCATCAAATAAC-----AAGCAATAAAATTGATGCTGAAAAATATGCCCTACTAAGAAAAACTTAGTATCTGATAAATCCACCATTGAAATCTACAAGAACTTTCAGGAGATTATAACACACATCCTTCtcaaaatcttcagtgaaattgaaagagaagtaatGTTTCCAAACTCATTTCTGTGCATGAGCGTGACTCTtat-tcaaaaccagacaaggatccaaGGAAAATGA-------CTGACCAATTTCCTTAATGAGTACAGATTCAAAAAGTCCTGAATGAAATATTGGTAAATAGAATGTAACAAATCATGAAACAGATCGTACATCGTGACTGAGTAGGTTTCATCCAGAGATTGTAGGAATGCTTTAGCACCCATAACTCAAAAAACATAGTATGTCACATAAAAAG---TATGAACAAAA--------GTCATATCAATAGACTCATAAAATACTTTTGACAAAACCCAAGACccattcataaaaaaa-------aaaaa----------aaaactaaaaaataggcATAGAAAGATTTTACTGCAATTCTTTAAAAACCAGTCATTAAAAACTGGCCAACATTGTATTAAACtggaaaaaacagaaagtgtcccctccaaaaccagaga-gagacaaggatgcccactatcaccccTCCTGTTCAAAA-AGCACTCAAATCATTAGccagagaaat------agagaaaaagatataaaggatgtgcataggaaaggaaaaagtcaaattattattgCTTTCGGATAACATGATACTTTCCATATAAGATACCTGAAAAACTCCATGAGAAGACTTCTAGAATCAATAAACAAACGTAGCAAGGTAGcaggataaaaaaaatcaacacagaaacATCAATAGTTTGATGGTGCAAACATCTTTTGCACCagtaatgaactcactgagaaagaaattaggaaaacaataccatttacaGTAGCAtcagtgaaaaaatatatatgtaatatatacatatgtagatGCGTCcatatttaggaaataaaataatgaggATAGTAAAAGAATTCTACAACAAAACTGT--AGTACTTT--GGAAAAAATTGAACAGGACatccaaaatgtgaaaaaatatccCTTGTTCCTATGTAGGCAGAACCAATACTGTCAAAGTGATCAT

a score=31529
s chr3            7219706 2390 + 160039680 GACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAA-GAGCAGCCACA-----TTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGA--AACTAAACAGGGACACAC-----TGAAACTAA-------CAGAAG----TGATG-------------------------------------------------------AAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATT-GTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA-----ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAA-ATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCC-ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggag--agaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaa-attccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg--tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaag-----atggaaagatctcccat-gctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttacta
s HiC_scaffold_1 23001335 2268 + 233722169 GACTTCAAGCCAAAGCTGGTCAGAAGAG-CAAAGATGGCCACTatatattggttaagggaacaatttgACAAGAAAAGATATTGATTGTAAACA---------CAAATTTATTGAACATTCACACACTATTTCATAAAACAGTGCTAgcaa----caaaagataaataaaaatcaatacaattagaGTGGAGGACCACAATACCCaga----acaaagagacagatcaactaaataaacaaaatatacaagCAAATATCAGGTTTGAACCAATCCTCATCAGGAGATCCCAATGCGTATCTCCTATCTAGTATTACTTTTGGATACCTTACTTTGTTAATacactttgaaaaaaaatggac--AAGAACTATATACAgaatatttcaaacaaaaatgacaaaacat----tcTTCCCAAGAGCACAGACAAATATCTCCAAAATAGAC-Acaca-----------------cttaaataaat--aaaagtaatataatttATCCCATTCATATTATCAGACAAGAAtgcagtgaaactagaaatcaaggGCAAAAGAAACCATAGCCATTAtacaaaaacatggaaatcaaGTAATGCACTCA--AATAATGAGTGGGTCATAGATTAAATAAAGAAAGTAATTACAGAATTTCTAACATCAAATATTAATGCTGATACTGCACACTAGAAGCAATGGGACAAAACGCAAGTGGCGC--AGAGAGAATTTTAAAGtt-tgaatgcccacatcagaaaa-gcaAGATAGGCCAAAATAACTCTGTGATGT-----------GCTTCAAAcactgaggaaaaaaacaaacccaaaactagtccaaggaaggaaattataaatatcagagcagaaattaatgattttgagattaaaaaattacaattaatCAAAGAGTCAA--AAAt----------tcatttgaagaaa--agaaatatagaaaaagccTTAGTCAATcttataata----aaaaaggaaatacccAAAACAGAGcaattggaaatgaaaaatgtaagatCAAACTGGACACCTCATAAATAGAAATTATTAACAATTACATT---AAACACCTGTGCTCTAATAAATTGGAGAAGTTAGAAAAAATCGATAGAATCCTAAATACATG--AAGTAtgaaaacagagccaaaaaaatataaatattctgagTAATTTGACAAgtggcaatgaaattgaagcaggaataaaaataatctaCCAAC----ACAAGCCCAGAATATGATTAATTCAGTGCTGGTTTCTACAAGATTGTCATGGCAGATCTGACT-------------------------------------------TGCTCCTCAAATAATTCCTGGAAACTAGCATTTACATGGTTCCAAAACCAgataaaaatctaaacaaaaagcagaa-tagagcccaatctctttaatgaacataaaatcaaaataatgataataatatacTGGCAAACATAATGCACAAAATCATCAAAATGATCATACATCATAATCAAGTAGGCTTTTTCCCAAGGATAAAACGATGGTGCAATGTACTTAAATTTAATAAACATAATGCATCAc----acaaaagcaagaac-aaaatcaGATGATCATAAAATAAGCC-CAGGCAGAGCCTCTGAC-AGATCTAGCA-TCATTCACGATAAAATGCCCAAAGAAAATAGGTGTAGAAGGATTGTGTCTCAAACTGTTAAACGCCACTTATGAAAAACCAACTGccaaaattacattaaatacaaTTACAAGACAAAATCTTTTCCACTGTAATCAG-----ATACaagaatgttgtttttatcact-cttatttaatacagtcttgaaaatatt---caaatcatggaagggacaaaaaaa---taaaaggatatgaA-TAGAAAAGTGAAG---AACACATTACTC-------------------TGCATGTAA--GACCCCAAAACATTCCACAaaatgactcctaaaattaataaccaaatttatcAATATAACAGGATgcaaaatcaacacataaaattCAATGAAGttt----------------------gtgaaaaagaaattagtaaaataaaatcatgcatGATAG-CACTAAGGACAAATAAATCCTTAGAAGCTCACTTAAAC-----AAGTGAgagatctatataaggaaaactACAATAATCTgaaaaaaggaatttgaaaag--CACAGCAGGAATTATAGAAATACTTTCAGTGGCTTA---ATAGCTAGAACTGatgaagtcaaaatgaccatatttccaaaactgctatacataTTTAATGAAGTCCTAATTCAAGTAACAACAGTATTCt--aacaa--tagagaaaaaaattctaaaattcacatggagctttaagaga--------aagaaaaccaatccTTGTTAAcaagagcaaggcaggaggcattgcaatctcagattttaaattatatta

a score=9358
s chr3            7219712 588 + 160039680 CAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTC----AATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA
s HiC_scaffold_1 25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGACATAAAGAGTCAGATAGACTTGAATATAGCA-TAGTTGGTAACTTCA-TACCCCAGTCTCACAA-------------------------TAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGCGG----------AATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGG---TCAATAATAAGTAATGAGAATGAA

a score=41242
s chr3             7219715 2565 + 160039680 CCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTC-----------------CAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTT-CTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACC--CAAACCTT-TGGGACAC------AATGAAAGCATTT------CTAAGA-GGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGG-------AGAGAGCACA-TACTAGC---AGCT------TGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG----GAAATAATCAAAC---TCAGGG------------GTGAAATCAACCAAGTG----GAAACAA--GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA---------AACCCTTAGCTA------------------------------GACTCACTAAAGGGCACAGGGACAAAATCCTAATTAA-------CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacc--ttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagt---gaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttga-tcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaa-caattggtgctggcacaactgg
s HiC_scaffold_1 185915450 2554 + 233722169 ctcaaagtattTAAAAAGGGGGAAGATGGGGAGTGCA--ACCACCaggggttcaatccctggcactgcaggaaaggaaaaaaaggcataACAATTTCATATCTATATGAGCCCAGTGTTGGGTCATCTAAGTATATAAAGCAAACGTTAAtggacacaaaaagaaaaataggtagCAATGCCATAATTGTATAGGATTTCAATACTCCACTTTCAATA-TGGATAGATTAATCAGAcaggaaatgaatttaaaaatactggCTTCAAAATGCACGTTAGACAAAATGGACCTGATAGATACACATTGAAACCTCTGCccaaaagcaca-gaaaacatGTTCTTATTTAGTGTAT-ATAGATCATTCTCCAGGATAGACCATGTGTTATGCAATGACAAAATTcctcacaaatttttaaa-atcaaactcaTC--AAGTATTACTCTGAACTACAGTGACTTGAAATTAGGAATCATTACTAAGAGGAACTTTGGAAACCCTACGAGTACATGGAAATTAAGCCGGATGCCACTAAACAGTCAACAGGGCaatgaagaaattgaaagggaaatttttaaaattctagagaaaaatgaacatgaaaacacaacataattgcaggcatggtggtgcactcctgtaatcccagcactcgggaggctgaggcaggaggatcattgcaag-------ttcaagaccagcctgggctacaaagtgagctcaaggccagcctgaactgcatagtgagaccctgtctcaaacaggcaaaaataaataaataaaatcaac---agagGGATAGGGGTTAGTTCTGATATTATATAGCATGTTATGGTAACTATATATAGAAGAATCaattatgtatttcaaaacaaCTAGAGAAGAGCTTGAAGATT---CTCAACACagagata----tttgaaaatatgaaaatattagttACCATGATTTGACCATTATGTATTAGAAGCACGTATTCAGTGACAATACTGTGCCCCATAAATAGGTACAATTAGTGCatggcaattaaaaataaataaaatcacaggtAAGAAAAGAGATATAGCT---GATAccatagaaatacaaagaatcatgAAA--CTATTATGAACAACTTTacaccaaaaaattgaaaaatttt-----------ttggCTCCCAGTCATACAC-AGCTACCAAAAATTAATCAACAAGAAGCAGAAAATTCGATTATACCCATAGAGAGTAACAAGATTGG-GCAATC-TTAA-AGTCACCCA-CCAAA---------GGACTA-ATGGCTTCACTGTTGAATTCtcccaaacatttaaagaagaacCAGTATAAATTCTTCTCAGACTGTTCCTGAAAATCttagagaaaattatttca---aactcATTCCACAAGGCCAGTATTACTC-AATACCATAAACAAACAATGacaccataaaaa-agaaaactatacatCAATCTCCCTGAAGAACATAATTACAAAAATCCCCAACAAAATCCTAGCACACTGAATTAAGCAACACATTTGAAACATCACTCGCTGTAAACAAGTGGGGTTCATCCCCGGGATCccagaatggttcaacatatggaaatcaatcAACACGATTCATCACACTAAC-AACTGAAAGAC--AAACCCTATGATCATGTAA-TAGCTGCAGAAAAAGGATTTGATAAATGTTAACATGTTTTCATGATTAAGACTCTCAAAAATT--GgcataaaatgtacattttccaACACAGCAAAGGCTATCCATGACAAACCCACAGCTGACATCATACTGAATGCAAAAACGTTGACAAATTTTCCTCTAAGATCTAGACCGAGA-GTGAGTGCCCACTTT-----TACTAATATTCAGCACAATACTACAAGTCTTGGCCAGAGCAATTAagcaatagaaataaataaaagccatatGAATTAGAAAGAAGGAAGTCAAATTGT--TTCTTTGCAGATGACTTGGT----CTTAGAAGTTCAAACCTTAAAGCCTCCACCAAAAAACTGTTGATTC-AATGAACAAACGCAGTAAAGTTTcaggatacaa-------------aaatcagtagcattcctatacactaatagaGAACTCCCTGAAacagaaattaagaaagcaaTTTCATTTATAAGAGCTACCA--AAAATTAGATATCTAGGAATGCATTTACT--AGGAGGTAAAAGATTTCTATACT-AAATctataaaacattgatgaaagaaattgaagaaga-cacaaa------taagATATCCCATATTCATGGGTTAGAAGAATCCATGGTATTAAAATACCCATAATACCCAGAGCAATCTACAGAATCAATTAAATCTCTATCAAAATATCAATGtctttcttcacaaaaataga--gaaaaatcctAAGACTCATATAGAACAG-AGAAGACCCTGACTAACCAAA---------------------------GAGAGAATCAC--TCcctgattttaaaacatactaCAGAAGTCTAGTAACCAAAACAGCACAGTGCTAGTGTAAAGACAGACA--CAGgtcaacagaacaaaatagagggCTCAGAAATAAATCTGTGGATCTACAGACAACTGACTTTTTGACAAAGTA-CCAACAGCAAATACGGGGAAAAGAACAGTCTTATTAATTAAATAGTGTGGGGAAAGTTGG

a score=69025
s chr3            7219732 3277 + 160039680 AGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAA--TTC--TGAATATCTATGCTCCAAATACAAGAGCAGC-------------CACATTCAC--TAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATT--CACATGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATG--------AAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTG--ACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-------TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACA--AGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGAT----------CAGGAA--TTCAA---------------GGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcc------------------------------------------------------------------------------------------------------accagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctc-tacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataa-aatatctcggcgtgac-------tctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtata--gagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatat---gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga---------cctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggt-ggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaa
s HiC_scaffold_1 72973619 3284 + 233722169 AGACAAAAATGaacccatgaaacagatccaaggaGAAATCC------AGGagtttaaaaacttcattgaaagtatATGTAGCAAGTTGAATAACAGCAAGGATAGAAAATCAgatccaaaataaaagaatatgactaatgaccag-gaaaagaaagagactaACACAATTGAagtgggggaccttaataccccatacTTACAAATgcataaatcaactagacaaaaatatcAACAATGAAATGATACAATTAAACAtagcctgtgaacaaatgggcttggtGAATGTCTATGGAGTGTTTCGTCACAAAACAGAATTGTATACATTCTTGTCAGCTGCATATAGGACATTCTTCAAAATCAATCACATATCAGGCAACCAAACATGCTTTAGTAAATGTagaggaattgaaatcatcctatgcatattatctgatcatagtgcaatgaaagtGGAAACCAACaccaaagaaaatcacaaaaa--ctacattaaaatatggaaatgaaaGAACACTTTTCTGGGCAATGAaa---gggtcacagagaaaattaaaaacagaattaaatagtgtatatatttaaatgataatGATCATTTAAATGTATAACACACTGAAACTTATGAGACGCAATGGAAGCAGTCCTACAAGGGAACTTCC------------ACATCAGGATAgca---gaacaagctcaaataaccaacctaatgttgaacttcaaatttctagcaaaagaacaaatcaa---acccaaagcttgtaggagagaggaaattgtaaaaataagagtagaaattaatgcaatacagactaagaaaacaat--aaaaactcaaTGTATTGaaaa----gttctttgaaagaataaataaaattgataaaccaccATAGAACATgatcaaaaagaggaaaggaaaaa--caaatccatgcaaatag-aataaaaaggagaaaatcaaaatggattccACAGAAATCAAGGAGATAATTTATACCTACTATGAGAACCTATATTTcaataagatgaaaaacacagaagaaaaggatagattcctagacacaatTAGATTTTCAAAGCTAAATC---accaaatagaaaaattataaataacctgatgtcagccaatgaaattgaaaatgtaatgaaacctttttaccaataaagaaaagcccaggccctgatggagtcactgttgaattttatcagaaatttagagaa---ctaatGTTACTAATGTTGAAACActttaaataaattgaaacagAGCCAGTACtttcaaaatcattcctggaagcacctATTAACCTATTTCCACAACCAGAGA---ACCCAACCAAA--AGAAAGCTacagaccaatcttcctaatgaatacagatttaaaaaaaaaaagtcctcaataagatactggcaaacagaattcacaaac-catcaaaaacGTCATAAACCATGACCCACTATGATTCATCTcagaaatgcaaggatggttcaacatacagaaatcaataaatgta-------atattagCAGAACAAAAGTCAAAacttacatgatcatctcaatagatacagaaaaagcatttgacattaAGTCCAAcacccactcatgataaaaacctacagaaaatagCAGACTTACAGGAAATTGCAAACTTACAGAAAAGGTGggctttacttcaatctgataaatggcatctatgacaaaccaatagctaatatcatattaaatggtca-aaattggaagttttctctctaaaattgagaataagacaaggatgttcg-TTGCCACCACTCTTGTGGAAATTTTAC----------------AGCAAtcggaaaagtaaaagaaagaaaatgaatgaagataggaaaggaagaagttaaattatcatcatttgaaGATGATCTGATATTCTttatagaagatcccaaaacttTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA-----------------------------TTCAGTAGTATgacaggatacaaagtcaacactcaaaactcagtcATTATTCTTGTACACCAACAACCAACtctcagaaagagaaattaaggaaaacacaTCCTT---AATAG-CAT-ATTATTATAATAGCATccagaaattattatttaatctaacaaaggatgtgaaagatctatacagtgaaaaccacagtaccctaaaaaaggagattgaagaagatatcagaaaatagaaagatatcgcTTGCTCttaga-cagaaaaacaaaca--gtgaaaatggTCCTACtctcaaaactgctatacagatttcaTTCAATCACAGTCAAAATACCATGAAtgtatctcacagatctagagaaaacatatgaaaagttcatctggaaccagaagaaactgaGAATAGCAAGAGTATTTATGTGTaacaaagacaaaacagc----agGCAAGGCACAATTGCAGacc-aaaattatactacaaagctactctgcaaaaatcagcattgtattggcaaaacaaaacaggcctGAAGAACAGTGGAACAGaagagaagatgcagacacaactcctaacacactcaactaccttatttCTGACacaggagccaaacatgttccctggaaggaAGATACTCTCtataataaatggtactggaaaaactggttttccatatgccaaagaatAAATCTGGACTCATGTTTCTC-ACATGCATCAAACtaacatcaaaatggatcaaacatctaaacattaaaacagacaTTCTTTATTTActtgaagagaaaataggtagaaatcttgaaaacatacaGGTCACCAGG----AACTCCAGACTACaaaggaaa-------tactacaa-----agaatcaacaaataagatcacaacttcttaaaaaaaaaaaaaaacctttg--acacaaaagaaatcaccaac-agatgAAAAGAtatccaacagaatgaaaaattatAGCCACTTGTCCT---TCAGACAAGGagtt-atatctagaatataaaatgaactgaaaattatCAGGCcacctaaattcaaa-gacctaatctaAAAATGTACCtc--------------aatacacac---------------------------------aaaaaagttca-------ttgtcactcaagagatgcaaatgaaaacaacatggcattttcatctcactccagaacgaatggctgtcatcaaaaaatcagtgaataacAAAT-ctgatgaggctgtggggaaaaaggaacccttttgcACTGTTAATGcaattgtagactggtgcaaccactataaAAATCAATATCAAGATTCTTTACAAAACTAGAATTACAGGTCCGGTTTGatgcagctattccccttctgagtataatgtcagaagaa

a score=14080
s chr3             7219813 840 + 160039680 TACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACA-ATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAA-CTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT---CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGC-CACAACGTACCCAAACCT--TTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG
s HiC_scaffold_1 154982297 788 + 233722169 taCTGGAGCAcccaaattaataaaacaaatactgcTGAC-CATGAGACATCAATTGAATACCAAGAAGATCATAGTTGAAGAACTTAGTAC-CTACTTTCACAACGAgtcagatcaactaaacaaaaaattcagtaaaaatatATTAGAACTGAATGTACTTTTGAA-CAGATAGACTTAATAGACAACTATAGAATGTTACACTGTAccacaacagaatacatattcttctcagcaagACACAGAGCTTTCTCCATTATAGACCACATACT-GGTCACAAAGCATGCCTAACAAACTACAAAAGTATTGACATCATCCAATGTTTACTATCAGAACATTGTGCATTGAAAGTAGGCATTAATCACAGAAAAAACTGTAATTTATAAATA-CCACTTGAAAAC--AATAACAATCTGGAACACAAAG------TGGT----GcataaaaaatcaaaggaaatgaaTAATTTCTGGAATCAAAT-AATATGAACTGTACAACACACCAGAACTTACCAGAGATACAAAGAAAGCAGTCTGAACATGGAAACATACAGCAATCAGTGTTCATACTACAAAACTagaatgagcccaaataaataatcaaatgatGAATATCAAGATActcaaaaatgaacaataaaatgaatttaaga-----------------------------atgGAAGAAATTAATGGAATCGAGActaagaaacaatat---aaaaatcagtgaatcaaagaa------cttttgaaaaataaataaaatatatggccACTCAGACAaacttaccaaaag----aaagaatgaatcgt-atcaatgcaattagaattGAAAAAGG

a score=10938
s chr3             7219875 552 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGAT-----------------------------------------------CATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAA-TAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAG
s HiC_scaffold_1 162323312 576 + 233722169 acacaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGATGAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaa-tatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAA----GCCATACAGCTTAGTTATa---------tcaata----caaaaa-attaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaa-aatcaaaggcaagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacag-aagaaatcaaatacttCATATAGTTAAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatt-taagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGG

a score=21873
s chr3            7219878 1152 + 160039680 CAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACAC--TCTTCTCAATGATAC-CTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA--------------ATCCTAATTAAC-------AAAATCAGAAATG-AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATA-----GAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC
s HiC_scaffold_1 66787240 1110 + 233722169 caattataacaggaaacctaaataacccactgtcacaaatagatcaaccagAGAAA---ATATCCAATGAAGAGATATCAGAGTTGCAAGAAACTTtgaaccaa-taaacttaataGAT---TAT------TTCCACCCAGCAGCAACagaataca--ttcttttcagcaataCACAAGACTTTCTCTGAAATATATCAAATACTAG----CCAAGAAggcttaaataaacacaaaagaatcaaaattatcccacacatgttatcagatcatagtgcagtGAAGCTAGAAATCAACGGCAAAAGAAACCAtggaaattatgcaaacacatgcaAAGTAAAATACACATGCAAAGTAAAAATACACTCAAATAATCAGTGAGTCATGGAAGGAATTGGACAGTTCTTAGAATC------AAATGACATTACAATGTACAAGAACCTATGAGACACAGCAGAAGCACTTATAAAAGGTAGGTTCATAGCTATCAATGCCCTCATCAGAAAA--AGAATGAACCCAAATAAATAAGCTAACAATGCACCTCAAGgttctaaaaaaaaat---ccaaat----ccaaatatagtacaaggaagaaaaatataaagatcagaaaagatattaatgaaatggagactcaagaaacaaaacaaaaaa-taacaaaatgaagatTTAGTTCAttgaaacattaaatgaaatagacAAATCC--GGTCTTCCccgaaaaaagacagaaagaaagaagagaaaagaaaggatgcAAATCAATCCAGTTAGAAGttagaaatgtaaaaatgcaAAACCACAATGAATTCTGCTAAAATTCAAAG-ATTATTAGTACTTACTCTGAGAACCTGTACTCCCGTAAAATAGAGAATTC--------------AATGATTAGAGACATATAAActa-caaagctgaatcaaga--aagtaaagatttttaataatCCATAATT-----AAGAAACAAGTTTGAAGAGTTTAAAAA----CTACTAACCAAGTAAAACAcaggtcttgatggatttactcccaaattctacaaaaattttaaggaaaatctaTTTCCAATACTCTTCAAGCTCcgtaataaaattgaaaaagaaagtacT--------GCCATTCTTGGAAGCTAGCATTAACCCGATTTCAAAACCTGAGAAGCACC

a score=10449
s chr3            7219879 690 + 160039680 AATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACA---------AATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTC-TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA--AGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 96150032 642 + 233722169 aatcatagtgGGGGACTTTATTATTCCACTTTTACAATTAG----------GAACCAAAGATAAAGCAAGAA-------------ATATCAGCGTTGAAACATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATATCTTAGGCTTTAAg-catacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTACATAAACAATA----GATCACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGT--------------TTACATCTGTAAATGaacatacagaaagaatagaGGGATCCCA----AATAACTTAAGGATGACTCATGAACTCCTAGAAAGTTACAAA--AAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCA-AACAATATGAGGgactaatgaatcaaagagtgga--CTCTGAAAAAGT

a score=35198
s chr3            7219925 1884 + 160039680 TCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACT------------------AAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT---CTCAAT--GATACCTTGGTCAAGGAAGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCA-CATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGA-GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA--AAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG--ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT------CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCAC--AAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACAT-----TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta---actcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1 38614215 1826 + 233722169 ttatataaaagaaaaataaatgag------ttgaaac------aaatttttgaacaaatgaacttaatagatatAAACAG--TGTTCCACCC---ATCAAGAGT---CACATTCTTTTCCATTGCATATGATAGTTTCTCCAGAATAGATCACA-----GTGAATAAAGCATTcctaagaaaatgcaaaagaatgaaaaatttaccatgcatattatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaa-aaataataaatccccAAA--CCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACCAGAACTCATGG-CCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaataggaaaatccaAA-----CCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaatcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaaggaaaaag---aaaacacaagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAG----TGTGCAAAACAGTGAGAGAACTCAGAAAAAAC----------TCAGACA--TACAAATTCCCAGAACTGACCCACAAAGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTT--CCAAAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGCAGGCAAAGAGAGT-----GACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA----GTCTAGCAAACTCTAACA-AAATTCTTGAAGAAAATT-------GTTTGGAAATTC---TTtagtac---aacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGA-AAGATGAACATCTTCACTCTGTTACCA------------------CCACT---------CTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGATGAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACT-CACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtag--aaataaaaaaataaatacacaaaaaag--aaaagcattcctAATAACAGTG-atgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=76512
s chr3            7219973 3273 + 160039680 ATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAA-TAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAG-----CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCA---AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATA-GAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA--GTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccac-cagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaa--------------------------cttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacac------ctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggaccta-atgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactggg--aaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaa--aaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagc-------cccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaagg
s HiC_scaffold_1 52903752 3100 + 233722169 ATTGAACATATGCAT------GATATATACGGAGTATTTTACCCTTTTACAACAGAGTATACATCCTTTTCAGGAGTATAtggtactttttccaaaatagatcacatactagtcCACAAACCAggt-taagtaaatataaaagaattaaaattatcctatgcataccATTAGACCATTGtgcaatgaaaacagaaatcaatgacagaagaaaattttaaaaaggcaaaaa-ctcctggaaaattaacaatgtactcctaaacaaccagtggtccacagaagaaatcaaagaagaaagaaa----tttctggAAGTCAATGACAGTGACTGTATAACTCAGTGAAACCTCTGGGACACTACAAAACcaattctaagaggaaaattcTTAGATTTCAATCAC------------------AGAGCACACCCAAGTAAATAACCTTATGGGCAAATTTATGATACTCAAGAGACAAGAAACCAACCCCACAccaaa-------attaaggagaaaaattaaag--agagtGGAAACTGATAAAATtgagactgaaaaaaataaacagtaaaaaatcaagaaattgaagagctggttctttgaaagaatgaataaaatacataagCCATTAGCCAGACTCAC---------CAGGAGGAAGACTTACATTAatga--ttagaaatgaaaaaggtaaaatcacaacagataatttcaaaatccagaagatagtaa----ctactttgaaaatttatGCTCcaacaaattaacaaattttgaagaactggacagatttctagacacataCATACTACTAAAACTAACCCAAGAAGTCATAAAAATGCT---TATtccaataacaagcaatgaaattgacaCAGTAATAAAAAATCTACCAACTAAGGAAAACCTAGAACTTGataa-ttcactgctgaattctacaaaatcaTTAAGGATGTTACACCACTAATact-ctcaaactcttcaaagaaatttaaagggGATGGAGTGCTCCCAGATTCATTTATGGAAACCAGTGTCCCTGTAATCTCAAAACCAGATAAAGACTAGTTAAA-----AGAAATGTATGCCCATCTCCTTAGTGAATGTAGATGCAAAACTCTTCaacaagatattagcaaatagaat------acaCATTACCAAAAAGACCATACATCATAAC---GTAgttttcatcccagagatgcaggtatggttcaacatacataaatcagtatatgtaatacatcatataaaCAGGAGCCAAGACAAAAACCATGTGATCATATCAGTAGACACTGCAAAGGCTCTCAACAAAAGCCAACACCCCTTTATTTTGAAAACGGTATAGGAAGACC---------------ATACCTGAATATGAAAAAAGCTAT-TGTGACAAATCAGTAGC------CATACTAAATgtggaaaaactaaaaacattccc-CTAATGtagggaacaagacaaggatgtccactgtttcctcttctgttcaacaaagtacttgaaatattagccagagcaattaggcaagagcaagaaataaaagggCTACATATAGGAAAA---GAACTCAATTTATCATTGCTTGTAAATGATATGGTACTGTACATAGATGATCCAAAGAACTACACAaaaaaaactcttagaattaacAACCAACTTTAGCAGTGtagtaggatacaaaatcaacaca-------cattAGCTTTtgtgtacaccaataatgaacttgATGAGAAgagaattatgaaaacaatatcaTTCATAGTGGCTTCGAGGAAAATGAAACACCTAGGAACTAACCTAACCATGCCAGTGAGggatttttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaactactGTGAAGGAGAGTGAAGATGACATCAGAACATG----GGTGTCTCCTGTTTCTGAGTTGGCAGAACCAAAGAtatcaaaatggtcatact-------------------tccagtGCAGttcaaatcaaaataccaacagcgtACTTAACCAATCTAGAGAAAACAGccataaaattcatatggag-----------ctagaagagaagaaacaatCCTGGACAACAAGAGTGAAGCAGAAGGCACAGCAATACCTGACTTCAAGCTATA-TACAAAGCAGGAGTGAT-AAAATGGCATGGTACCAGAACAAAAACAGATTCATGGATCAACAGAACAGACTTAAGGATACA-AAACCCATCCATACACATTCAACTACAGT-ATTTGCTCTTTG-CAAAGGAGCCTACAAAATATGTTGGAGGAAAAATATCCTATTCAACAAGTAGTGATGGGAAACTTTATTATT----TGCAGAA-------AATGTACCTTTATGTCTCACCATATACTGAATTAAAAACGAAACtgatcaaagacctaaacattgaaacagaaacattaaatccacaggaagataaaataggaaaaacactT---CACATAGGTttaggaaaggattttctaaac--aacTCTAAT------CACAGAAAAAGCAAGAATGAACAAATAGGATTTATGTCTGATTCAGAAGCTTCTCTATAGCAAAAGA-ATCAATGGTAGAGTGAAGAGGCAACCTACAGAGTGGGGAAAAGTATTGCCACCTgctcc---tcaga----ggactaatatctaaaatatacaaagaactcaaaaaattaatcT----AGGATTTAAAGATCTAGTCATGAAATGCTCCAAAGAAATGGACaca----tcacagaggaagaaatacaaatggccaacaaatatatgaaaaagtgttcaatatATCTGACTGttagtactgttttaatttgtatttgtctaagattccatcttgctctggaaagaatggcaatcatcaaaCAAATCAAACTGA---CAAATCCTGGAGTGGCCATGGTGAAAAAGGG--ACCCcttcactgttgctggaa-tgtaAGTTAGTACAAGCATTATAGAAATCGGTGTGGAGTTTTCTC----AACTGAAATTATAAATCCCATGTGACCCTGCTGTCCCCCTGCTGGGTATCTTCTCCAGAGAACTTAAGGCATCTTACTGCAGTAATTggtgcatac----caatgtttatagcagcacaactcttAATGGCTAACTCCAGGAAGCAGCCCATATGCCCACCAACAGAAAACTGGATAAAGAAGCTGTGGTATCTATGCATGATGGAATTCTACTCTGCT-----------------------------------CTGGATGCACCTGGAAAGTATAat-gtgagtgaaataaaccaggcacacaag

a score=11271
s chr3            7219989 580 + 160039680 TGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACC-ACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA--AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 96522418 566 + 233722169 TGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTTAAaca----caaaaatactgaaataatacAGTGCATATTAATGGGTCAT-----actaaaatgaa-----attagaaagccacaaaaaagaaactgctcagatCCATGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaataca--aatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=10254
s chr3             7220019 604 + 160039680 AAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACA-TCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA-CTATTCAAAGAATTAACCAA---------ACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAAT
s HiC_scaffold_1 129059242 565 + 233722169 aaacaacagaaTTCACATTCTTAGCAGCAC---ATGGAAGTTTCTCCAAGGTTGAACTCATACTAAGCCATAAAGCATACTTAGGTAAATCCAAAAGTTTCAAAATTATACAATCTA--CTATCAGCTTATGGCACAGTGAaagtagaaatcaatggcaagaaaaaccacaaaaattatgCAAATGGATGGAAATCAAACAGTATTCACTTGAATAAT-CaatggtcacagaagaaatcagggaagCAATTAG----CTCCTAGAGTCAAATGATGATACTAGTACAACA---CCACAAATACGGGACAGGATGAAAGC---------AAGcatgtttatagctgtgaat--------tAACAAATCAGAGTGACTAAAAA--AATAACCTCATGATGCACTGCAAGGGCCCAAACACACAAGGA-------CAATCCAAAAGTTTCACAgtgaatgaaattataaatatcagag------tagATGAAATGGAAACTGCAAAaagcaatataaagaatcaatgaatctaaGATCTCTAAGAGTCagttc-ttgaaagaataaataaaatagacaaaactttaat----cttaccaaaataaataaaaacaaaat

a score=33137
s chr3            7220100 1744 + 160039680 TCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAA-TTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAG------------AGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAAT-TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC---CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA--GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG--ATCCAACAAAGATAGAGAAC--TTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCAT-CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagca-aaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattag---ccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaat-tagggaaacaacacccttctcaatagtcac-----aaataat--------ataaaatatctcggcgtg--------actctaacgaaggaagt---gaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaaga
s HiC_scaffold_1 63894708 1658 + 233722169 TCAACAAATTATAAAAAGCTGAAATCATATCAAGTATCTTTTCTGACCGCAGTGCAATAA--------------CACAAGAAAGACTTTAAAAACTatacaaatacatagaaattaaacaaaatattccAGAATAACCAATagattgaagaagaaattaagaaggaAACTTAAAAAATTCTCAAA--CAAATGAACACGAAAATACAACATACAAAAACTTATAGAATACAGAGATAGTAGACAGAGATAGTAGTACTGCAAGGAAGCTTGTAGCAGTCAATAGCTACAAAAAGAAA---GCACAAGCATCT-CAGACAACTTATCAGCAAACCTCAAGGAACTAGAAAAA---TAAGCCAG---GCTTAAGACTAGTAGAAAGAAAGTAATAATAAAG--------------------ACtagaaaaaatagagac-----aaaaaatcaatgaaacag-----------ttttaaaaaac--ataagattaataACCCCCTAGCCTA--TGAGAaagatggggggggggagaacTCAAATGTAATCAGagttgaaataaaaaaggagataatACAATTGAC---------ACACAAGACACAGTCACTAAAGACTTATAAACAATCATATGC-CAACAGATCTT-ACAActtagaagaaatagacaaaatctTTGACATAC-----GTATCTTAAGTGATtcatgaagaaatgagaaacGTGAATGATACTG----------------------AGTTAGTAATAAGGTCTCTCAtcaaagaaaaagccagaaa-aaatgGCTTCATTAC-TAATTTTACCTATCACTTAAAGGAGAACTAATACCAATTC-ACTTAGATtattgcaaaaaattaaaaatgaagaaattctcCCAAACTGATTCTAGGAGGCCAGCATTATTCTGACTCCAAAATCAGATAAGaccattaaaaaaagagagaaaaaagtacaggccAATATTCCTGATAAACATAactgcaaaaatcttcaacacaATATTAGCAAACTGAGTCAAAAGA-------------TTAttcatcatgatcaagtggaattcattc-aaGGAGataagaatggttcaacatacacaaatcaatgtaATATGCCACATCGCACCAATATTATGAAAGATCAAAACCATATAAGCATCTCATTAGACACAGGAAAAGCCCTTGATAAAATTCGATATCCTTTC---ACAAAAACTCTGAGCAAATTAGTTACAGAAGGTATGCGTCTGAACACAATAAAGGTCCCACATAACATGCCCCATAGCTAACATCACACTGAATGGACAGAAGCTGAAACCTTTCTCCCAGAAATTTGGATCAGGACAAACATGTCTACTTGCAACATTTCTATTCAACGTAATACAGGAAGGATTAGGCAGCAGAagaattaggcaagagaaagaaatgaaaggcatccaagttaaagagaaaaaagccaaatTGTCActatttccagatgacatga---tatattaaaaaaacct--aaaatttcaCCAT---ACTGttcaa----ataaacaaattcagtaaaattAA-AGATTCAaaa-caacatacaaaaatcagtagtgttTCTATAAACCAATAGTGAATTAtctaaaaaagaaatctagaaacATAATCTCATTTACAACagctacattaaaaataatgaaacgaaacaaaacacacacacaaaaaaaaaacactctgg-GAAGAAATTTTAGAGAGATATCTAccatgaaaactttaaaattcttatgaaagaaattaaaaaaga

a score=12906
s chr3             7220159 597 + 160039680 AGGCTGATCTTCAATAACAA----AATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACT-------AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC--TAAAGGGCACAGGGACA----AAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA----------CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGATGAAATGGACAAATTT
s HiC_scaffold_1 121849223 588 + 233722169 AAACtgatttttcatgaaaataaaaacaaatatcagTTAAGTGTTATTGA---------TTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGA------ATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTAT-------ttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaattt

a score=35321
s chr3             7220187 1448 + 160039680 ACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGT--GCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC----ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAA-ACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT-----------GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagc-aaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc--actttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttc
s HiC_scaffold_1 167392364 1376 + 233722169 acagAAATTCTTTAAACCCatagaaatcaaacaatactcTCTTGAATAATGAGATCTTGGC------------------AGAAATTAAG---TTCTTAGAATCAAATGATTATGTAAATAAAACGTACTAGAACtaatgagacacaatgaaagctgtcctaagagagaagtttatagctgtgaataagcacatcagaaaaacagaatgcgttcaaatgaaataaacttttgGTTATTTCTATCTCAAGACcgtagaaaaacaagaacaacccAAACCCAAAGATAGCATCAGCAAGGCAATTATAAAGACTAAGCagtga--taaataaaattgagcctaaaa-aatta--caaagaatcaatgacttGGACAGCTGGTGCTttgaaacactaaacaaaatagacaaactcttAACCAATCGTATCGAAACcaaaaaagac-----ccaaatcaatacaatgagaaatggaaaaggtgaaatcacaaaagACTGTGCTAAAATCTAGACTATCATGGAAAACTACTTTGAGAATCTgtactaaaaaa----ggaaaattcagaagaaattgaTAGGTATCTAAATACATATGaa----caaagctcaatcaagaagatataaaaatcctgactgATTTAACATctgtcaatgaaactgaaa-----attaaaaagctactaactaagaaaagcccaggtcttgacaAAATCACTTGGCAAATTCTACTAAATTCTACTAAAACTTTGGAGAAGCTCTAACACCAGTACTCTTCAAACTGTTTAACAAAATCGAAAGGGAACTACTACTTCCAAACTAATTCCCAGAAAAAACCATTAACCTGATTCccaaaccagaaaaggacccaaccaG-------------AAACCAAGCTCTTCAATGAACAtttatgcaaaaatcttcaataagatattagcaaacagaatgcaacaaatcatcaaaaagatcataaagC--AATCA------------Ccaaaggatgcagggatggtccaacacatgcaaatcaataaatataacctaccacacaaacagaagcaaagacaaaagtcac-------tctcaagagatgcagaaaaagcacttgacaaaatccaacatccattcataatAACAATCCTGAAGTCACT--GTACAGaaagtctttatttcaatctgttcAAACCTATTCATGACAAAACCAAAAGTCATC----TATTGAGTGAAGAGAAGCTAAAGTTTATTCTG-TAAGATCAGGAATGAGACAAAGATGTCAACTGTCAACACtactgttcaatatagttctcaaaaTGCTGGTCAGAGCAATCACagtagagaaggaaataaaagggatat-tacaggaaaataagaaattaaattattaaaatatttgcagatgacatgatcctctaca-----gatccccaaaacttcaccaaaaaactccta-----gaaaaacaagTTC

a score=13488
s chr3            7220207 858 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAA------------TTCACCCAAGAGGAGTAG--ACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACA----AAGATAGAGAACTTCAGACCAAT-TTCTCTT
s HiC_scaffold_1 77585700 816 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcag-gataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGACAATTTAAT-----ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt

a score=33104
s chr3            7220207 3034 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAA-AGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT-------AGACTC---ACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA-AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAG--------AAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaa---------taaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtat----gataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattc-atctggaataacaaaaaaccgaggatag---caaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagac-actgaaacttatagaggagaaattggggaaaagccttgaagatatgggca-----caggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagatagggga---------------------ctaa---tatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcac----ctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacac--tcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca-tagtactaccggaggatccagca----atacctctcctgggcatatatccagaaga----agccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaa---cagaggaatggatacagaaaatgt--------ggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa--tggatggacctggagagcatcatcctgagtgaggtaacacaatcac
s HiC_scaffold_1 38267598 2854 + 233722169 TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAG-AATGCAGGA-GAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaat-taaaggaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAGGagctagaggaaaaaaaaaatcaaa----cataagag------agggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggtttttaaaaacaaataaatattaaaaagacccTTTATTTATTATTAGAGTTTggattaaggaaaaaagagaaatgata-tagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGG-TGAATTATTTGGCACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATA-------ATGAAACAGGACTTTGGAACCATAATTTAATAATCTCACTGA-AAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaa-tatttcttgaaatcaaagataagaaaatacttgcaaattcACTT-ACGAGGCTAGCATGACCCTGATAAA-AAGGTACATtaggataggaaagaaa-agaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGAATCCTCAACAAAAC---------------ACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGTTA---------TACACAGAAA--------AaccttttcttctaaaatcagaGAGAAGACACGAATG------TTCTCATTTCTATTTCAGAGGAGCAGTGAAAGTCCCTTCCAGAAGAATAAGCATAAAAAATAGGTTAAAAAGCATCTAAAccagaa---agaaagtaaaatggcTCCTATTTGCTGATG---------------------------------TCATCAAA-------------------------TCAATGAAGTTGCAGGATA-AAAACTAACATGCAAAATTAAGCAACATTACTACAAACAGACAATGAAGTATTTGAACATTTTGAGCAAGAAA----------ACGACTCTATTGAGTA--cattaagtatttaaaatacttgggaataaattagaaaaatgagcTAAAATATCTCTGTACTCGAGTAAAACC------------AAaaagtaattaaacagaa---aaataaatagaaagatattcaaCATCCATGAATTAG------------TGTAAAAACATC-AGTATACCCAAAGCAACCTACAG--TCAGTATGATTCCTATTAAAATGCCAGTGTCTGTTCTCatagaaatagtaaaataaatgttaacttttaatataaaatcaCAAAAGACTGTGACCAGCTACAGAAA----Tcttaagca-aaaagaacaaaccTGAAGCCTTCATACTACCCGATTCCCAAATCTGCCACCAAATTATTTTaatcaagacagtgtgacacTTGAAAACATTCAG---AGCAGCACAATAGAACA------ATCAGCTGAGAACAAAGTTACACATTTATGGCCAACAGATCTTCAACACAGTA-CCAAGATCA--CAATAGAAAAAA-----CTTCTTTAATAACAATTGCTGAGAAAACT--------TTAATTCACAGAATGAAACCAGACTCTTATTTTGTACAGTATACAAAAGCCAgcttaaaatagataaaagatttaAGCATAAGAAAGCAAACTACTGGA------AGAAAGCAAATAGAAGAAA-----CAAACCTCTTGGCATCCTGCTGGGCGA----CTTTGTAGATGACCCCAAAAGCAGAAATAACAAAAGTAAGAGTGGATCAGTGGGATTACATCACATGAAAATGCTCT------GCACAGAACAGTGACAATTA------------ACTAGCAGAATGGGAGGAAGTATTTGGAGATTGTACATCTGATAAGATCAGCACCTTATCAAAAACATCTCTAAATGTACccaaaatacatgaagaactcaAGTTGCTCTATAGCTAAGTAT-AAATAATCTGGTTTTAAAATGGACAATGGA--TAAATAGATATTTTTTGCAAAGATGAGT--TACAAGTTGACTGACGGGTATATAAAAGTGTGTTCAATACTACTAAGTCTAAGGGGTGTGCACATCAAATCTATAATGAGTCACCATACCACTCTCATAGGCACAGTTactatgaaaaagacaaaagacaataaaagttGATAAGGATATGAAGTAAGAGAAACTCTGTATTCCA---TTGGTGGAGATATAAATTGGTACAACCgtcatggaaaacagtatggatattcttttaaaaatgagaaagtacagcTATCACACAGCTTGGCACCTTATACATTT-----GTCTGTACTCATGGGATATGAAATCAGGATGTTACGGAGATGTCA--CTCCA--GTGTTCACTGTGATGTTACCTAAGTTAGCT--AAGCTGTGAGT--TCCATCTGAGACTCAAGAGCAAATAAGCCAACAAATAAGATGGGCTATGAAGATATAAGCATACAGTAGAATATTACTCATTT-CTAAGAAGAAGGCATC-------TTCTTGTGCTAACTTGAAGGAACTTGGAGGACATGATGCTAAGTAAAGTAAGCCAGGCAC

a score=10896
s chr3             7220288 465 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-CATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattc------------------------acacatcag------gaaaacagaacctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacataaattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=34765
s chr3            7220316 1547 + 160039680 ACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCT-AAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC-CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT---------------------------------------------------------------------------AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA-----AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAA----AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagat
s HiC_scaffold_1 44540947 1570 + 233722169 ACCGGCGGGACCCAGTGCAAACAGTCCTGCAAGGGAGGTTTACAGCTGTGCACACCA-CATGGGAAAGGCACAGGGAGCCCGCATAAGTGACCCGATGGTGTTTTTCGAGGGGCCTGGAAAAACAagaaatccaaat----ccaaagctaggacaaggaggaaaattataaagatcgggacagaaatcaatgcaattgagattttttaaaactac----agagTCAACGAATCAAACAGCTGCTTCTTGAGAAGAATAAACCGAAGAGACAAACGCTTAGCCAGCCTTACCCAAAAACGTAAG---AAAAGACCAATCAGTGAacttagaaattaaaaaggcaaaatcaaaaaAGACACCactgaaattcagattattagtaactactt----GAAAACCTGTACACCAATAAATTGGAGGatccagaagaaatggagagattcctaaATACATGAGAATTACCAAAACAgaagtaagaaaatataaaaatcttgaaTAGGCCAATAACAGGTAGTGAAATTGAAgcaataattttgttttggaattctatattatcatttttatccttttttcattttaagatttaaaaaaattgaaacaataataaaaaaaacctaccaaGTAAGAAAAGCCTAGGACCCAATGAATTCACCAGTGAATTCTACAGAGACTTCAGGAAAGATCTAACAGCCACatgcctcaaactcttcaatgacactgaaagggaagcagtacccCCAATGTCATTCC-TGGAACAAGCGTTcacctgattccaaaaccagacaaacagCCAAGCACAAAAGAGAACTACGGACCGATCTCTTatatgaacatagaag-aaaagtTCTCaggaaaatactggcaaacagagcACAACAAGTCATCATCAGAAAGTCGTCACACATCA-GACCAAGTAGGCGCCATCTCAGGG---------TGGTTTGATGTATGCATTTAAATCAATAGATGTCATTCaccacagaaacagaaacaaggatgAGAATCACATCAGCATCTCAGCAGGTGCAGAGAAAGCCTTTGGCAAAGTCCAAAGTCTATTCATGA-AAAAACCtagaagaaaacagatataaaagggctttatctcaatctgat-agagccatctatgacaaaccttaTGCCTACATTATATTAAAAGGTGAGagatt--------tctctctaaaatca-ggagtaGA----------CACTCTCACCACTCCTGTTTGACATAGCACTCAAAGCATTAGCCAGATCagtcaggaaaaggaaagaaataaaaggggta-ggATAGGAAAGGGGTAAGTTAGACCATCACCATCTGCAGATGGTCTGATTCTCTATAAAGAAGGGCC--AAAATGCCACCAAAA-----CTGGTACAGTTAACCAGC-TCAGTAGTGTAGGAGGATTCAAAATGAATACACA-AAACCAGTAGTGTTCCTGTACCTCAACAATGAACTTACTGAGAAGGAAG-TGGGAACCCAATACCATTTCCAATAGCgataaa-aattaaacaca----ggaattaacctaaccaagagaGTGAAAGATCTccaccatgacaactacagtacCCTGAAAAGGGAAATCAAGGAGAATATCAGGAAGTGGGGAGAT

a score=26496
s chr3            7220329 1937 + 160039680 AATGAAAGCATTTCTA-------AGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC----ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG--------AAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTC----TCCCAGCCAAAA---AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTA---GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCA--CAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcag----ggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag--tcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaatt-cttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggt
s HiC_scaffold_1 34237452 1824 + 233722169 aatgaaagcagtcaaggaaaaataaaaagaaatccattATTATAAATGCCC---------AATAAGAAAACCCTCAAATCAATGACCTGAAAACTCTGAACCCTTAAAACATTGGAAAAAGAATGGACTAA---ACCTAAACCAAGTAAA-GGAGGGAAATAATAAACATGAAAGTGCAAATTAATGAAGTAGAGAACAGAAAACTAATAAATTCAGTCAATGAAACTAA-ATCTGTTTGTTTGAAAAAGATAAGAGAATTGACAACTCTGTGACTAgtttgagtaaaa---aaaaataaagaatgctcAGTACTAGAGCTGGAAATAAGAGCAGGAACATTGCTATTGAACTCAGTAACAAAAAGGATTCTAAGGCA--ATAAGATGAATT-----AATGCTATGTTAAT--AAATCAGAGAAC----ATAAAGTGGGAAAATTTCTAGAAGGATAT----TATCAAA-CCATctcaagaagaaataga---tttgaaTGTATCTATAAC-----AGGAAAGGGTGTCAATTATGTATAATCAAAATATTATACACAATGGAAAGCCCAGATTCCCATGAA--------------CTACTAAACACTTAATGAGGA-ATAATATCAATGCTTCAAACtctattccaaaaaaaaaatttaaaggagggaACTCTTTCCAACGCACACTGCAAATCCAGTATTACCTCGAAACTAAAATGAGACAGAGACATCT--------CAGAAAACAACAGATCACTATCTCTTATAAACAGGGACACAAAAATTCTCAGCAAAATACTCATAAACTGAATCCAGCAccatataaaaaaaattataaaccatGGCCAACTGGGGTTTATCTCA-GGATGCAAGCTTGGTTTAACATctaaaaatcaattaatgtaatacaccatatcagcaggataaaaaataaaaaacacatgatcatctcaatagacaaagtaaaagcatttgacaaagtccaaaactctttcatggttaaagaagaaaacaaatcagcAATAGAAGGAAGCTTTCTCAGGTTGATAAAGGACATCTACAAACCTCCATT-GCAAACTTTATATTAAATAGTTAAATACTAGgtgatttctctttaatttcagaTCTAAGAAAGAGAAGTCTGTTCTCATTGTTTGCACTT----------GAACTGGAGGCTTCCAATAGggtaattaaacaa-aaaaaaatttaaaaagcatctagattggaaaagaaaaagtaaaataagctcTATTTGTAGAAGACATGACTCTATATAGAGAAAATCCTAAGGAAGTcacta-aaaattattaaa-ataataaatcccTTCAACAAGTTTATAAAATACTAAATCAATATATATAA-tcagttgtatttct---------gttttaataaactaaaataaaattta--aaaataa-----ttaacaatagcatcaaaaagaataaaatacaaatcaacttaacaaacacaaa---------------acatactgaaaaatACA-----TTCGTAAAAGAAATT----------------GATGAAAGCATAT--CATGTTCCTAGATTAGAAGAA--AATATCAGTAGGAAATCAATACTTCCAAAG-----TTACACAATCAGCACAATTCTCACCAGAATGTCTAGTGGATGATTTTTATAAATCACAAGCTG--ATTCTAAAATCGACATAAAATTCCAAAGGGCTCACACCAACCCAAATTATCATAAAAACTTTGAACAAAGTTGGTAGGCTCACACTTTCTGACTTCAAAACTTACTGCAAAATAACAGCAAC-CATACTGTGTCATTCTTGTGTCAGGGTTG-CATGTAGATCAATGCAATGAATTTGGAG-TTCGAATATGAACCTATGCACCCATGGTCAATTTTTTTCC--CATGGGCACTGAGATCATTCCATGG-AGAAAGACTAACCTTTCAATAAATGAT

a score=16273
s chr3             7220343 864 + 160039680 TAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGA---AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGC--------TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA
s HiC_scaffold_1 187840076 856 + 233722169 TGAGGAGAAAATTTATAGCCATGAATGACTTCATCACAAAAACAGAGTAAGCCCAAATAGATATTTTAACCACACACCTCAAAGTCTGAGAAAAGCAAGAA-TGATTCCAAGTAATAGCCAGTACAagcaagaaaattataaaaaatgggagcaagaaaatcaatgaaattgagacaa-agtaattaaatgaagaattaatcatg-gaaatgttcatt-tttgaaggaataaatgaaatagaaaaatcctTAGGCAGTTTATCCATA----------AAAAAGTCCAAataaatgcaattagaaataaaaatgatgaaatcatAGCGAACACtgccaaaatgaaaaagattatt-gACTATTTTACATA--TCTGGATGCAATTAATTGGAGATTTCAGAGTTAAATGGATACactcctagatacatatgaattctcaaaactgaaccaagaagatttaaaaacactCAATA-TTCAGTAATAGATAATAAAATGGAGGCAGTAATAAAAATACCCTACAAACTAAGAAAACTCTAGGTCTGTAttcattcactgatgaattctcaAAACACTTCTGGTCAAATCTAACACCTATGTATTTCAAGATgcttagtgaaattgaaaaggaaggggTACTCCCAAAGTCCTTCCTGGAAGTTATCAGTACCTcgatttcaaaaccagacaaggacccagtggggggaaaaaaaaagaactgtgtaTCAACTATTTTAATGTAGACAGATGAAAAATTCCTCAAGAAGATACTGGCAATTAGGGCAACCGAT----------CACCAAAGAGATCATACATCTCGACCAAACAGGCTTTATCCCAGGGCCTTGATGATGGTTCAATATAAGCAAATCAGTAAGTGTGA

a score=59657
s chr3             7220380 2406 + 160039680 AAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTT-CTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGAT-AGAAGTAGA-AGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcc-----cactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatca-aggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaa-ttaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacct--ctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgac------------aagggag---------------ccaaaaccatccag------------------------tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaag----atcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaa-agacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctt--tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctc---agaactgaacaaa------gaattctcacctgaggaatac-cgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac
s HiC_scaffold_1 120882403 2354 + 233722169 aaaacg--aataagcccaaataaataacctagcgATGAACCCTAtaatcctagaaaaacaaaaacaatccagACCCAGAGCTAGtccaaggaaggaaattatacagatcagagtggaaatcaatgaaattgagacaaaaattac-----aaagaattaatgaatcaa--agttagttctttgaaagaataaacaaaatagacaaaac---agccaatataatgaaaaagga--gggaaaaggcctacatcaatgcaattagaaatgaaaaagatgaaatcacaacagacactgcCAAGATTAAAAAGATTATTAACTACTT-TGCAAAA--CTGTATGCCAATTAACTGGAGAATTCAGAAGATATGGAtagattcctaaatacatatgagTTATCAAAACAGAGCCCAGATTTAA---AAactctgaataatccaataatagacaatgaaattgaaacagtaataaa-aacttaccaactaagaaaagcccaagtctgGATGGATGGACTGCTGAATTTCTACAAAAATTTCAGAGAAGATCTAATACCAATGCTCCTCacgctctttaatgaaattaaaagtagaGAAGCACTC---CCAAATCATTCCTGGAATACAGAATTAACATGACTCCAACATCATACAAGgactcaactaaaaaaaagaactatagaacaatttctttaatgaatatagacgtaaaaatcttcaacaagaaACTGGCAAACTGAATGTAACACATCACTGAGAAGATCATTTATCATGACCA----------------------------TAGTTTAACatactcaaataaataaatgtaacatatcacataaacagaagcaagagcAAAACTCATATGATCATCCCAATAGATGCATAGAAAATCTTTGACAAAATTCATTATCCTTTCATGATTGAAAACACTgcagaaaataggtatagaagaaCCTTATCTTAac-tgataaaagctatttatgacaaacctactgccaGAATCCTATCAAATGGGGAAAAATTGAAACCTTtctctctaaaattaggaacaaaac-aGTCTGCTATGAGCACTATCAGCATTCCTGTTCAGCATAGTCCTTAAAACATTAGcaagaacaattaggcaagaaaaaagaattacaagggatatgtataggaaaagaagaagccaaattataattatttgtaggTGACATGTTTCTCCTCATAAAAGATCTCAGAAACTCaacaaaag-actcctagaatgaATAATCAAATTTACAGATACAGTAGGATACAAAACTCAACACgaaaaaaccaatagcattcctctacactaatAACAAACCCACTGagtaagaaattaggaaacaaataCCACTCATGA-AGacaccaagaa---aaaataaat-------acttaggctaaagaagtgaaagacctctacaatgaaaaatacagtgctctgaa-aaaggaatCAAAG-GGACATCAGAAGATGGAAAAGTATCACCTGTACCTGAATTGGTAGACCCCGTG-TACCAAAATGGCTATATTTCCAAAATCGTTTTATAGATTTAACACACTTCCAATT-AAATACTAACATGCTTCttcaaaggaat-gaaaaagtaatcctaaaatttatatagaaccaGAAGAGCCCTAGAATGGCAAAAGCAGTCTTGAGTAACAAGAGCATATAGCAGGAGACATTGCAATCCTGGACTTCATGTTATAGTACAAAATAACAGCGAGAGAAACAGCTTGGTATTAGCCTCCA-ACAGGCATGATGATCACTGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGCTAGGGGAAATATAGccattcaataaataaattct----------gttatCCATATGCAGAATATTGAATCCAAATCTGTATCTCTTTCCAtgtactaaacaaaaataaaaatggatcaaagaactaaatgctaaaacagaaacacttaacccGCTACAAGATAAAATGTGTAAAACCCCTGAAGTCATAGGTGTATG------------AAACAGAACTGCAA----TTATACAATAAATATtaccaagaatcaataaatgtgacCGTATCAAA--------TTTCTGCAGAGCAAACAGACA--ATCagtagaatgaaaagacaacttatagaatggggaaaatttttgctagctattct---tcagacagaggattaatatctagaatgtataa-----taaagaa---------taaaaaatgagat--ccaccataaaataaaagacccaataaaaGTGAGCAAATAAAGTGAATACACGTTTCATGTAAATACAAATGGctagtaaatacatgaagaaatgtttaacatgACTGACtactaaag------aaattaaaacaac

a score=18453
s chr3            7220507 761 + 160039680 GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCA---AGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1 95894463 736 + 233722169 gtgaaactaaaaaaaagta--caaaaaattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACC-------ACATTCA--AAAGAAACgattattaaaaaacaaattcatacaataaggaatgaaaagggtgaaatcactacagattctgtggaaatttagaagatcaccaatacttattttgaaaacttttacttgcataaaataaaaagcatagaaGAAACAGATAGATTTctggaaacatg--aattaccaatgCTGAATCAAGGACATATAAATTGTTAGAGCAACACAAtgtcaattaatgaaattgaa-caataattaaaaacttactgacTTGTTAAAGCCTGGGACATGATAGATTAACAGCtgaattccaaaagaaatttagaaaatatttaacatttggtCTTCTtcaaatctttaatgaaattgaaagagaatcaatgCTTTCTAAGGCATTTATGGGTGGAAGTAATACAATggtaacaaaaccagagaaagatccaaccaaaaaagagaaaaacatgccAATATCTCTAATGCACAGAGAGGCAAAAATCCTTA-TAAAATGCTAGCAAGCAGAAATCATCTAGAAGT--TTAGAgca---------catgaccaagtgggattcgtgCCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGTACTATACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=17962
s chr3            7220510 758 + 160039680 GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACAT---------TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1 95901303 750 + 233722169 gaaactaagaaaatagtacaaataattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACCAC--AttcaactttatcaagaaaagataattaaaaaacaaattcatataataaggaatgaaaagggtgaaatcactacagattctgtggaaattcagaagatcaccaatacctattttgaaaatttttagttgcataaaataaaaagcatggaAGAAACAGATGGATTTCTGGAAACCTG--AATTACCAATGCTGAATCAAGGATATATAAAAGCTTAGAGCAACACAAtgtcaattaatgaaattaaag-aataattaaaaacttactgacTTGTTAAAGCCTGGGATAtgatagattcacagctgaattctataagaaatttggaaaatatttaacaattggTATTCTccaaatctttaatgaaattgaaagagaataaatgCTTTCTAAAGCATTTCTGGATGCAAGTAATACaatgataacaaaaccagagaaagatccaaccaaaa-agagaaaaacatgccAATATGTCTAATGCACCGAGAGGCAAACATCCTTTATAAAATGCTAGCAAGCAGAAATCAGAATATCATCTAGAAGTTTGGAGca---------catgaccaagagggattcatgcCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGCACTACACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=10781
s chr3            7220545 671 + 160039680 GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAA-ATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC-TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA----------------------------TAGTCT--------CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA----AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATA
s HiC_scaffold_1 95326533 669 + 233722169 gaagaactggttctttgaaaaaat-------------acgCTGTTATC-AAACTTACcagtagaaacagaaaagagactcagatgaaaacaattagaaataaaaacggCAA------ACCAAAACTCTACTGAATCCAGAACATAGTCA----CATCtgtgaaaaattatattccagCAAAAGGTAAAACcttaaaaaatatggaaagatcTTTATATTTGTACAAATTAGCAAAGCTTAGACA--ATAAGACAGAAAATTTTGAATAACGCAAAATTAAGTAGctaaattgaagaagtaataaaactaaaactaaaaaatgtttttaaaaactaacctAGAGAAAGTCCAGCTAAGAA--TCACAGGGCTTGATGAATATATTTCTGAATCCTACAAAAGCTTTATAGATATTAGTTATATCAACATATCTCTTCAAATTGTTCCATGAAGTTGAAA----------------CCATGCACTTTGTAGAAGCCAGCATCTGTCTGATCCTGATACTTAACAATGAccccacaaaaaaggaaaactatattcCAGTCTCCTTACTGAACATGAATGCAAAAATCCTAGAAAATATATTAGCTAACAGAATGAAACACATCATCAAAAACGTCATAGGTCAAGACTAAGAAGGTTTCATGCCAGAGTTGCCAGGATGAGTCAGCATATAAAAA-ccacaaatgtaatacaccaca

a score=64296
s chr3             7220566 2678 + 160039680 AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA------TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATAC-GAAAATCCATCAATGTAATC----CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacg--aaggaagtgaaagatctgtatgataaaaacttcaagt-ccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaac-tcaattcttcaacgaattagaaggagca-----------------------atttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaa-----tagaat---tgaagacccagaaatgaacccacacacctatggtcacttgatcttcga-caagggagccaaaac----catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctt-----tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctc--------agaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctgg-cggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacaca-atcacaaa
s HiC_scaffold_1 101526179 2603 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaa----------gaaatgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggta--taataaaaaaaataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaaccagacaaaga---------------aaaCTGAATGCCAATTTCCTCAAAGAATGTAGATG-GAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaaaa--taggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACCTAGAACAGTCAGGCAAgtgaaagtaataaaaagaatgtgtataggaaaggaagaagtcaaattgttCTTATCTGCAGATGACAGGATCCTCTATATAGACTACCCAAGAAATTCCACCAAAAGTCTCCTACA----ATAACCAAATTTAGAAATGTATCAGAATACAAAATTAgcacaaa-aaatcaataacattcctgtacatcaataatgaattcactgagaaagaaattaggaaagtaACAC------TAAtaacatgaagaaaaattaaatatctaggaattaacctaactcCCCAAAAGTGGAAGATCTCTACT-TGAAAACTaccagtactctgaaaaaggagatcaaagagaacatcagaaaatggaaagatatttcctgTTCCTGTATAGGCAAAACTAATAGTGTCAAATGTGCACTTTCTTCAAagctgatatatagatttaatataatcctaataaaaatatcaatatgtatccctcacagaactagaggaaaaaaaaaatcttaaaattcagaaaacaatcctaaattcatatggaaccagcaGAGACTccgaatagcaaaagcaatcctgggcagcaagaacaaagca-------ggaggcttACAACACTCACCTTCAAGTTACATTaca-agctacagtgataaaaacagcaaggttttggcacaaaaacagacatgtagatCACTGGAACCCACTAGAGTGTATGAAGAC----AACTACAAGCACA-----ATTGCTATTTGAGCTTTGACCAATGGGAAGAAAACATAACATTCTTTggaggaaagataacctctttagcACATGGTACTGAGAAAACCGGCAAT--CCATATGCAAAGCTG------gacctatatctttcaccatgtactaaactgaaattAAAGTAGATCAAag-gctaaatattaaaacagaagcccTAAACCTACTGGAATATacaatagataaaactcttgaagtcattgttgtaggcaaggactttttgAATAGAACACCAGTTTCACAATAAATAACATCAAGagtcaacaaatgagattattatatcaaataaa-----aaagt-------aagcaa---------CCAACAAG------AGACAACGTACAgtatgggaaaatttttttttgctagctattcc---tcagacagaggacaaaTAT-CAATA-ATATGAaggactcaaaaaaatcagactccccaaaataaaagatcaaattaa------aaaaaatgggaaaCCAAAATAAACAGACACTTCTTA---GAAGTATA---AGTGgccaaaaaatacatgaaaaaaaagttcaacatctctGACCACTAGAGGAATGCAAATCCAAGCTATACTAAGAtcctatcttactccagaaagaacggcaatcaccaagaaatcaaacaataacaaatgctggtggggctg-agTGAAAAAGGAGTCCTTTAACATTGCTGGTGGAAACATGAACTAATACATCCCTTATTGAAATcactatggaaaatatttttaaaaattaagaatagtaATTCTATTTGATCCAGGTAtttcccttctaagtatcttcttaAAAGA----------gctaaaaacatcatat-----------tttttAGCAGCAGAATTCATAATAGCTATTCTTAGGAAGCAGACTATGTATCCATGAATGgatgaagggacaaagaaaatgtatt---tttacaaagTGGAATAATATTCAactttaaagaaggataaatttgagacatttgtaggaaaatggatacgcTTA------AgcgtgttaagtgaaataaatcagaacacAAA

a score=59350
s chr3            7220579 2717 + 160039680 GATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAG-----------TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAA---------------------------------------GGTATTCTACCC--------AAC---------TCATTTT-------ATGAAGCCACT-----------------------------------------ATTACTCTGATACCTAAACCACAGAAAGATCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAA-GACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatccca-ctaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaa--agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaac---ttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac-cgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggct--------------aagatcaaaaattcaggtgacagcagatgctggcgaggatgt-ggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggta----agaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaag---gaactcacacaatatgtactcactgataagtggatactagcccaaaaccta
s HiC_scaffold_1 64169318 2774 + 233722169 GACAAATCTCTAACTgatcttaccaaaaaagaaaagaa--aaggccaaATAAATtcaattacaaatataaaaggcaaaatcacaataaACTTTGCTAAAAGTTAGA---TTGTTAGTAACTTCTCCGAGAACCTGTTCTCTAAAGAAacggagaattcagaagaaaca-aCAGACGCCTACTTTGGTATGAATGACCAAAGCTGAtgcaagaagatataaaaatcatgaATAATCC---ATTAGATAgtgagatgaaagaagaattattttcttcttttttaacctttcaactaagaaaagcccaggtcctgatggattcactgatgaattc------------aggAAAGTTCTACTACTACCAttcctcaaactatttaatgaaattgaaaggaaataagTACACCCTATAAATGAGGTGTATATACAATGGAGGAATACTCTTCTCTAAAGAACAACAGGTTAcagccatttctaggaaaatggatgcactttcagaccataatattaagttaaGTAAATCAGATGGTTGACATTGCCAtcatttcaaaatcagaaaacaacccaaccaaaaaaagagaactttagcctaaactcttcaatgaacATAGACCAAAAAAGTCTTTAACAATCCACTAGCAAGTATCattcaacaaatcatcaaaaaaatcatACATTGTGCCCAGATAGGATTTATCCCAGGGTAGCAGGGATGATCCAACATAGACAAATGAACAGATGTGATACATCACATTAACAGAAGCAAAGGACAAAAGTCGCATGCACAACTCAATTGAAGCAGAAAATGCCAGTGATAAAAtttaacatccattcatgataaaaa--ctgaagaaaacaaacataGAAGAACCATATCTCatc-tgataaaagacatttaTGGCAAACCTACTCTCAAGATCATATTAAATATGGAAAAGCTgaagatttttctatttaaattcagAAGCAAGACAAGGATATTAACTACCATCATTATTGTTCAATATAATTCTTGAAACTATAGCCAGGAGAATCATCCCagagaaagtaataaaaaggCGTATGTGTAATTAAGGAATAAGTCAACTTAACATTATTTGGAGACGACATGACCCTCTACAT-AGAAaccccaaaaattccatcaaaagactcctagacataataaccaaattcagtagcatagagggatacaaaattaacacaaa-aactcagtaatattccTGCACCCCAATGataaactcattgagaaagaaattagag--ataacacttttcacaatatcattgagaaaaattaaaca--caggaATTAATACAACTATGGCAGGGAAAGACCCTTATAGCAAAAATTACAGCACTCTAAAAAAGTagagattgaagaagacatcataaaatggaaatacatctaTGGTTCATagataggcagaatcaatatagtcaaaatggtcatactcctgAAACTGTTAAGTAGATTTATTGAAATCTCAATTAAAACACTAATAGCACTCCTCacaaaactacagaaaacaatcctaaaattcatttggaaccagaagagacctagaatagcaaaagcaatcttgggcAATAAAGACAACGCACAGGGCAACACAATCtc---cttcaagttatactacaaaggtacaatgatgaaaacaaaaca--attaacacaaaaacagaca--tggtTTAATGGCATAGAATATAGGGTGCAGACACAACTCCAGGCACTgtcagctatctgatctttgaccaAAGAGTCAAAAATGGATGCTGGGGGAGAAATAGCCTTTCTAATAATTGGTGATGGTA-AACTGGTATCCATATTGCATAAGATTGAATTTAGATCTGTATCTctcaccacatactaaactaaaataaaaatgtatcaaag--------ataaaactatgaaaacagaaacatttgatGTACTAGacaat----aaaactcttgaagacataggcataggcaagaacTTCCTGAATAGAACCCCAATTTCACAAGAATTAACACTAAGCATCAACAAATTGCATC--ATCAGATTAAAAAGCTGCTGTACAAAAAAGGGAACCATCAGCAGAATGAACACACAATCTACAAAACAGGAAAA----TTTA-CTATTCT---TCAGA----GGACTAACATCTGGAATACACAAAGCAATCAA-AAATTAGATCCCaata---taaaagacccaatcaCAAAATGGG-----TAACTAAATAGACACtccaca---gaagaaaatacaaatggccagtaaatacaCAAAAAGACGTTCAACATttctgatcattagagaaatgcaaattaagacaacac--agATTCtgccttactccagaaagaatagctttcatcaaaaaaaaaaaaaaaaaaaaacactagataACAAATGCAGCTGCAGCTGCAGGGGGGAAAGGAtcacttcttcattgttggtgggaatgtaaactagtacaatcattgTAAAAATCTGTATGGAGTttcttcaaaaaactgaaacaaaattctaAT---TGGTCCAGCTATTgcctttctaggtatctttctaaaag-agttaaagacgttatattacagtgacacatgcataacTATGTTTGTAGTAGCACACTTCAAAATATCTCAGTCTTGGGAGTAAATTAGGCATTCATCAGCAGATGTGTGAGTAAAGATAGTATTGTATTTATTCATAATGAATTATTTCACTGCCATAAGGAAGAATAAACTTACatcatttatagggaaatggatacaacttgaa---ttTATGTTAGgaggaataaatcagacacacaagttgaaatcatgcattgt---ttctcttatatatgaa----aacccaaaatata

a score=35931
s chr3            7220676 1902 + 160039680 AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCA-ACAAAACTGGAAAA---CCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAA----GATCAGGAATTCAA------GGCCAa------------------------------------------------------------------------------------------------------------------------tacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctc----cttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatct
s HiC_scaffold_1 55056159 1708 + 233722169 AAGTCCAAATCTCATTCAGTATCTTCTAC------CTATCCTTAGATAAGACTCAAAAAGTCTCTATAACAGTTG-------TTGTGAATACATATCGcttaccaaaaccaaaccaaga-agACTTAGTCTTCTAA---------------CTAAA------------------------CTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAACTTTAATGAAACTAAAAGGAAGAGAGGACCC--ACAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaac--------------------------------------aaatcaacaaatcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaac--ataatagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTG---ATTACCACACAGGGAGAC-TGAGTCGGCAC-TCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattct

a score=21880
s chr3             7220742 694 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-------------------------GAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagaca
s HiC_scaffold_1 111277613 723 + 233722169 aagtcaaaagactactagatacatatgaattaccaaagttgaatcaagaatatataaaaattctaaataactcaatatcaataAGTGAAATtagagatgtaattaaaaacctatcaacaaagaaaagcccaagccctgatggattcactgttgaattctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcgaagaCTTTATatgactacttctcaaactctttaattaaattgaaagggaagtaacaTTCCCAAATTCCTTCCTGGAGACAAGAATTACTCTGATTCTAAACCTAGAGAAGAACACAACTAATAAAGAGAATTGCATGCTAAATTATCTAATGAACATCAATGTAAATGTCCTCAATAATATACTAGCAAACAGACTGTATCGAACTgtcaaaaagattgtacaccattGCCTAGTGGGATTTATCACAGGGAtacaaggatgattcaacatgc-aatatccataaatgtaatgcatcatattaacagaaacaaggacaaaactTATATGATCAactcaagagatgcagaaaaagtttttaataatgtTCAGCATCCAttcgtgattaaaaaaaaaaaacctacagaaaattggagtagatggtcatTGTTTCAACCTAATAAAAGca--ctatgacaagccaacagccaacatcatactaaatgcacaaaaacttaaaacttttcctctaaaatcatgaacaagaca

a score=31986
s chr3             7220814 2017 + 160039680 CCATATCCCCTAAAGAAATAGAAGCAG-TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT---GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGA--AGTAGAAGGTA--TTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAa-tacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcca-----ccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtga----ctctaacgaaggaagtgaaa-----gatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattgggg-aaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaat---gggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaaca-gactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcag--aaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaa
s HiC_scaffold_1 122040671 1899 + 233722169 CTAGATcacaaaaagaattagaaaaaggtTATTATTAAT-----AAGGAGAATAAATCAGGAATCTAAAATCTCTGGCCAAAGAAAATTCtatcaaatatttgaagaaa---tagaacCAATTCt---caaacttttccaaaatatagactaggaaaaaataagtacattttgATTCTTCCTATGGAACCGGCATTACtatga-aatgaaagcaaaaaaaaaggcaTCATA---ATAAAACTATAGAACAATATTCCTTATGAATATCTGTgggaaaattctcaataaaatact-gcagTCTGAATTTACCAGCATATTGAAAACATGATACAGCTTAAACAAGTGGCATTTATTTTTGGAATTCAATGATGGTACAGCATATGAAAATCAGTCAGTGTAATGTGTCCCATTAacagaatgaaggggaaaaaatcacATGAAGATCTTACTTGAGGCAGAAAAGGCattacacaaaatgaaatactcTCTCATAATCA---------ACAGCATAGGAATTGGAAGAGAATTACCTCGACTTAATAAAATCCATACAT-GCAAAATCACAGCAAACATTACATGCACTGAGCCAGGACTGGAAACTTTTCCTCTaacatcagtaaaaaaaaaaatct--ccagtttttattt--cttttcaatatagtactagaagtttTCAAGAGagcaattag------gaaaaaaataaaaagtaccaaGATTGACAAGGAAATAGACA---------CTTTTATAGATCATACGATCTTACA-------------GAAAATTCTGGCATTTCAAATAATAcagataataaataaaca---------aagtagtAGGATACCAATTCAACACACAAAAACCAGTCGCATttgtaaacaataaaaatgaactacctacaaagaaaattacaagaataatttcattt-------------ataatata-----------cGTAAGATTCactagcaaaagaaataatataatgaaatagtataatgaaaactacaaa-cattgctgaca-aaattttaaaagacataagTAAATGAGAACACAGCTCATGGTCATGAATC--TAGACTTAATAATCTTAAAACATCAGCATTACCCAAAGCAATGTATAGAGT------------TGTCAAAGTTCCAATGAGGTTttatacagaaacagaaaaactcatactcaaattcatttaaaatttcaagagACCCTGAATagtcaaaacaatcttgaaaaaagACAGAG---CTAGAAGATTCGTATTTCCTGATTTTGAAACTTACTATGAAACTTCAGTAATCAACACAGCAAGGTACT------GACAAAGGCAAGCATATTAATTGAGCAAAACAGA--GCCGAGAAATAAACCTTTATATGTATAGTAACATGATTTTTGACAAGT--GTCAAGAAAATTCAATTG-----AGAAAGCTGTTTTGACAAGAGGTGCTGGGAAAAATGACTACCCactcacaaaagaataaaatcagattCTTGCCTAAtaccatatataaaaatttactcAAAATAGACCAAAGACCTAGATGTCAGacccaaaactataaaatttttagaCGAAAGCATGGGTCCAAAGCTTTACAACACTGGGTTT--GGCAATGATTTTTGAGTACAATCCCTAAGGCACaagcaacaaaggaaaaaaacaaaaaatacagagactca--gaaattttaaaact--tgcacATCTAAAGACAATATCAATAGAGTAAAAGGGCAATGCACgtaattaagaaaatatacataa--atcataCATCTGATGAGGAACCGGCATT-----------GAGAACTCCTTAA-----AACTCAGTTGCCataaaacaatccaaataaaATCCTGGACAAGGACTTGCATAGATATTCATCCAAAGAGGACAGACTACTGACCAGAAAGCACggaaaaagatgttcaacattgTTAATCACTAGGGAAACGCAGGGCAAAGCCATAATGAGACACCATAATACACTTATTATGATGGTCACtgttaaaaa

a score=27463
s chr3            7220846 1946 + 160039680 AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG--AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagt--------aaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaa-agaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaac---tcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaact---tcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatt-aaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa-actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacc-cagaaatgaacccacacacc-tatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccat--acttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaa---ctgaacaaagaattctcacctgaggaataccgaatggcagagaagcatc--tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
s HiC_scaffold_1 56820437 1808 + 233722169 AAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaa-ataggaaaatctcCCTACTTC----TATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaagaagctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActcactattaaaaaaaaaaaaaactagaagctTTTTCTCCAA----------------------------------TGACTGTTTTAATACAATTTTAGAAGTTCCAGCCTGGTTAACTag-caagaagacaaaacaaaaagacatctaaattagaaataatggaagaaaaattatCTCTATTAGCAAATGATGCAGTTTTACATGTACAAAACTTCAAAGCTTTCACAAGAAACCTA--AGAACTGGTAAATGAATTCAGC-AGTTCACAGGATATAAAGTAAACATGTTAA--AAATCAGCTGTATTACTGTACACTAACAAAGgataatctgaaaaaaataata-tgacaCAAT-TCATTTAGGgtagcatcaaaaagaataaaatactt--------------------aggtgAAAGACTTATGTGATAAAAAACAGGCAAAATTgttgaa-----aaattaaagagaaagtaaataaatggaaaga-catccatgttcatggattggaagattTAATATTGCTAAAATGCTAGTGTTACT-AAAGTTAGGTACTAGTTTAAAGTAttccttattaaaaattttaa---aatgccaatgagaaactgaaaaatccaTCCCAGAATTCATCTGGAATCTCAAAGCACCTAAGCAGACAAagtaatattgaaaaagaaaaacaaa------gagatttcACATTTACTGCCTTCAAAACTGACTGTAAAACTCCAGAAACCAAAACGGGTTGTTATCgggactcacacacaca-------cagtggaataAGATAGGAACCCATAGAAAAGCATTCATGTACTGTACAGTTAACTTACTTTAgataaaaggg-------------------gaaaggaaactATGTCAGCAAATGTTGCTGGGAAAACTGATCAT--TCACCTACAAAACGACAAATTGACCTGTCACCTTACAACACTGCAACAA--TTaattcaaaatagataaaaaaaatctaaatgcaacagataaaactacattttttataataaaataaggtGAGAAAACTTCATGAGTTTGG------------ATT-----------TGGCAATGATTTATTTCCTACGATGTCAAAatcacacaagagaaaaatttactACATCAAACTTAGCAATCTCTGCACATTAAAGGGTGCTATC-ATCAGACTAAACATGCAAccacaaaatagaagaaaatatttgcaaatt----gtcTAGTAAGGGATGAACATCTAGAATGTA----------AAATCGCTAcaactcaaaacaaaagaaaacccaagTTAAAGATGGG---CAGAGtgcttgaatagacatttct----taaaGAAGACAGACTAGAGGTCAGTTATCAATGAGAAGATCCTAGATGTTGCTAATCATTAAGGGAATACAAATCCTGACCACCATGAG

a score=27436
s chr3           7220904 1030 + 160039680 AGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCC--Aatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagatt
s HiC_scaffold_1 2142831  947 + 233722169 agaaatttagagaagatctaacaccaTCACTCttcagactctttaatgaaattgaaagaaaaca-atactcccCTAGTCATTCC-TAGGACCAAGATTCCCCTGATATCAAATATAGAGAAggatccaatcaaaaaaaaaaa----------------------aaaaaaaaaaaaaaaa-----aaaaaaa-------------aagccacacacCTAT-AGGTCAATT-----TCCtgatgaa-------------catagacacaaagatggttcaacatatgaaagtcaataaatgtaatacaccatatcaacacaACCAAGGGCAAAAACAACATGATCATTTCAGTAGACACAGGAAAAGCATTTGACCAAGtctaacacccattcatgataaaaattctgaagataattggaatagatggtctttttttttcaacCTGATGAAGTCTATCTGtggcaaaccaacagctaacatcatactaaattgtCAGAATCAGAAaactttcactctgaaatcaaggacaagataaagatgtccactgtcatgACTTCAATTTGCTAAATTTCTAgcaatactagccagagtaattaaacaagagaaagaaataaaagggatataggtaggaaatgaagaagttaacttataattatttgtggatgacatgtta--ctctacaAGAAGATTCAAAAACTCTAC---------TCTAGATCTATTAATCAATTTCAGTCATATAGCTGAGAACaaaattaacactcaaaaatcaacaacatTCTTGTAGATAAATAACAAGCTCact--gaaaaaaactaaagaaaccaTACATTTCACAACAG-CATA---AAAATGCAATAGTTAGAaattaatctaatgaaggaagtaaaa------tatattgaaaactacagtactctaaaaccagaaatcaaagaggatatgagaaactgaaacgatatcct-tgttcttgggtaggaagaacaaatatagtgaaagtggacatactttcaaaattattaaacaaact

a score=44222
s chr3             7220904 1893 + 160039680 AGACCTTCAAAGAAGATCTAACTCCAGTTCTGCA-----------CAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATC-----------------ATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatgg--ctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaa-----------ctgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagga-gaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatcttt--acctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaa---------------------------atcaaata---------------------accccctt-----------------aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac-cctgagattcc
s HiC_scaffold_1 159886302 1846 + 233722169 aaaactttaaaggagATCTAGTGcc---tctatatagaagaccttCAAACGctttaatgaaatcaaag-ggAAG-----------CAGTCATTCacagaagcaagcattaccctgattccaaaaccagaaaaggacccaaccaaaaaggaaatctACAGTCCAATTCTTCA-atgaaaatagaagcaaaaatcctcaatactaTATTGGCCAACAGAACATAGCAAGTCATTAAAAAGACCCAGTAGATTTTATAGCAAGTCATCATGACCCAGTAGATTTTATTCCAGGGGTGCCAGAATGGTTCAATATATACAAAT-CAGTAGTGTAATGCTCCATACAACCAGCAGcaggaacaaaaatcacatgatcatctcaacagatgcagaaaaaaccttcaacaaaatccaacatccattcataataaaaagcaTGAAGAAAACAGCTAAAGAAGGCATGtatctcaaactgataaaagccatctatgagaa------agCACACATCCTATTAAATGGAAAGAAGCTAAaatctttccctctaaaattGGGAACAAGATGAGGATGTCTGCTATCACC--ACTCATTCAA-ATAGT-CTCAAAACATTAGTTAGAGCaattaggaaagagaaagaaataaaaggaata-----tggatgggaagaagttaaattattattttttgtagacGACATggtcctctacatagaagaccctaaaaact-caCTAAAGtgctcctagaattaataaccaaattcagtagtataacaggatacaaagccaacactcaaaagtcaatagcattgctgtacgccaataataaactcaccaaaagaaaaactagagaaataataccttttacaatagcatcaagaaaaatgaaatactcagcaATTAACccaaccaaggaagtgaaagatctctacaatgaagACTTTAGAAACTTGGAAAAGTAGATCAAAGAGGACctaaaaaaat------------------------------------atactgaaaaaaaagaaagagctttcaaaaaaaaaaagaaag--------------------agctttca---------------gaactagagaaaataatccttaaattcatatggaaccagaagagacctagaatagcaaaagcaattctgggcaacaagggcaaagCAA-------GAGCACCACGATCCTGGACTTCAAACTAAACGACAAAGctgcagtgattaaaaaaaaaaaaacccagcatggtatt--taaaaaaaaataaaaatagacttaTGGAACATAATGAAACAACT-----TCAGGCcactcagct------accttatttttgacaa--------------------agaggaaaaggagcCTTAT-ATCAAAAGGCTCTGGGAAAAGTGGCTACCCACATGATAAGGGTTGAAACTACACCCTTAACtcccaccatgcactaaactaaaattaaaatagatcaaaggtctaaataatagaacagaaacaat----ctgctggaagacaaaaacagataaaattcttgaagacacagacataggcaaagattttctgaacagaGCCCTGGTTacataagaaataataccaaaaatcaacaaatgggatcacatcaag-tTAAAAGCTTCTGAGCAGCAAAGga-------aacacagtgaagagacaacccacagaataggaaaaaattttgcAAGCGAGTCT---CCAGACAAAGGGTTAATGTCTAGAATAtagtaagaatgaaaaaaaaatggtcccggggatttagctcggaggcataagcacctggtatcaaacatacgcacacacacacaaatggacCTCCCCAAACTTAGATTTAatcaaaaaaatgggcatctgagaagaatagaCGCTGctcagataaagaagtataaatgccaaaaaaatat---gaaaaatgttccacattgctggtcattaaagaaatgcaaattaactcAATGCCTGGTGTTCC

a score=40225
s chr3            7220909 2333 + 160039680 TTCAAAGAAGATCTAACTCCA---GTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC--CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaat-aatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg------------tatagagacagacaa-----------------------------------------------------gtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctg---aacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga------cctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtac----------------atctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcaca
s HiC_scaffold_1 71824309 2160 + 233722169 TTTATAGACAATATAATGCTACAGGTTCTA---AAACTctttaacaaaattataaaagatgCAATACTCTCAAATTCACTTCTAGAGACAAATATTATCATGATATCAATACCAGGAAGAGAtctacaaccaaaaaagagatcTACAGGCCAATGCTCCtaatgaacatcaatgcaaaattcctcaataaaatactagc-aaacaaatgcagcaaatcatctgGAAGACTACACACCATGACAATGAAGGATTCATTCCAGAGATACAGGGCTGGTTCAGCATATGCATATTGGTAAATACAAAGAACCATATTAACAGACTCAAGGACAAAATGtaacacgatcatctcaatagatacagaaaaatca-tCACCAAAGACCAAGAttgattcatgataaaaatgctaTGGAACactggaacagatggtctttatctcagtctgataaaagccatctatgacaaaccaacagtcaacaccATACTAAATTTC-AAAGCcagaaagctttcactccaaaactaggcacaaaacaaggacatCCA-TTACAACTGAACTTATTGAAAtggttctggaaactttagcaagaggattgaaacaaaagaaagaaataaaaggaacaaggacAGTAAAGGAAAGggttaaatgatcattatttgtggatgatcTACTTCTCTACATAGAAAATACCCAAAACTATATCACACCATtggtagatttaataaccaaattcagttga-TGACAGTATATAAGGGTAACAATGAAAAATCATTGGTTTTCCAGTGCATAAATAACCAATTAACAGATAGA-AAATTATAGacataacacctttcacaatagcagcCCCTCAAAATGAACTATATAG----Gactcaatctaacaaagtaaaatatttttacattgaaaactt---gTATTTGAAAAATGAGATCAAAGTGGATTTTAGAAAATGG--AGATACCCATTTTTCTTGGGTAGGAAG--TCAGTACAGTGAAAATTGTCAGGCTTCTAAAATTGCTATGCTGTTTtgatgcaattctgatcaaaatatcagtaccatatctcaaagaattatagaaaacaattctaaaatatattcagAACTAAAACAGAC---------CAAAAGCAATGCT-----GTAAAGGTAAATCGGACTGCATCATGATCCCTGACTAAA------ATTACAcaatggtactggcaaaaagaagaagaaaaaggaggaggaggagaaatacaaacaaacaaacaacaacaacaacaaaaaaaaaccaagcaaataaaaaatgcaaCTGAGGACTGAGGATTAATGAAactgattagaagatgtagaaacaactccagacagaGTTAGTCAACATATCTTCAACAAAAGAGCCAAACACgatcactgaaagaaagacagattCTCTAATGAGTGGTGCTGGCAAAACTAGTTTTCCATATTCTGAA-----------GGTTAAAACTT-TCACCTTGCACTCAGCTACAATTTAAGTGGGTCAA----------ATACATACAGAAATCTTACATTTGCTGGAAGATAGAAGAGGTAGAACTCTTTAAAACAGAGGTGtatgcaaagactttatgaaaaaaaaaaaaacaatcacacaaaaaacatcacaaagaattaagaattgagatctcatcttaataaaact------gttttacacagcaaaagaaagcaccaacGGGGTGAAGAGACAACTCATGGTGTGTGAAAGAGT-TTTGCTCAGTCTTCTTCACACAGAGGACTAGCATCAAGaatgtaaaatgaattttaaaaagcagaactc------ccaaataa----------------------------------------------------------------------------------------------------------------------------------------------------------------------ataaattcag---------------tgcaAAAATGTGTACGAGAAATGAGACTTTCACCATTGTTGGTAGGAACacagactagtgcaacca--ctgaaAATCTgcgtagagattcctcaaaaacctaaaactagaaattccatttgatccatcCATGCCACTTCTTGGCACTTTtgctaaagaaat-----------aaaagcac-taCGCAGATCTATTTTTATAGTAGCATAGTTTGTACtacataaatcttggaaacaacccaaatgaccatCAGTGGGCGAATTTATAAAGAacttgttgagctctttttttttttttttttttgatagtgaagtactactctgc-attaagaaggataaactggagacatttctagtcaaacggatgcaccttgaaaccacacttttaaattagataatttggacaca

a score=26485
s chr3            7220917 1349 + 160039680 AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGAT----------------GCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcaggga--ctagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactccta-aacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaagg----agcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgt-----gataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagg--------gagccaaaaccatccagtggaagaaagacagca-------ttttcaacaattggt
s HiC_scaffold_1 22270377 1298 + 233722169 AGATCTAATACCAATCCTCCTCAAACTCTtgcatgaaattgaaagggacagAGAGCTGCCAAACTCATTTCATAAAGGCAGCACGATCATAATAGTAAAGCCAGACAAAGATTCAACAACAA-AGAAAGCTGTAGGCCAGTGTCTTTGATGAACATAGATCCTTAAGGAAATTGTGGCAAAAATCCTTAAGGAAATAGTGGCAAACAGAAGGCAATAGATCATTAAAAAGGTCACACATGATAACTATGTTAGCTTCTTCCCAGGGACGCAAAGACAGTGACACAAATGTAACT-GATAAATGTAACACATTGCATAAAGACAATGATGGGTCAAAATCACAAGATCATCTaaatagttgcagaaaaagcctttaaaaaagctcattat---tttatgattaaaaaccaaagcaaaataaatgcagaaagaccttatctcaaactgataaaagtcACTTATGACAAGCCCACAG--------ATACTAAAAGCATAAAACCTGaaattattctctttaaaatagggAAAGTGAGAGAAGGTTGTTTACTCTACCCACTTCTCTTCAATAGAGTACTCAAACT-TCAGCCAcagcaatcaggcaagaaaaagaaat-aaaaggatataaataggaaaggaaaaagtcaaactaTCTTTTTATTCAGGTAAAATGATCCTTTGTGTAAAATCTCCCACAA----CAGCAGAAGGATCTtgcaactaaataaataaattcagcaacgcAGC-----ATGAAATT--CCATAACA------------TTCTGTTCATCAGTAAT-GATATACTCAGAA----------TACATTATCCCATTCGGGATACTTTCAAA----GTTAGATGCCTAGGAATCAACCTTACCAAAGAGTTAAAACAATTCT-TAACGAAAA-TTagagactctgaagaaataaattgaagatgatgtTACAAAATGGAAATGCATCCCCTGTTC-----------------------CAGATAAGTCT-TATTaccaaaaaaaatctattgatttAATTCAATTTCTACAAAAGTATCAATAATAGCCTTCACAATACTagaaagaaaaagcaatcctaaaatgcatatagaaccagaagagatctagaatggCTGAAACAGTCTTGAACAAAAAGAGCAAAGTAGGAGGCATTACAAGCTTAGATTTtaagttatataacaaaactatggtttaaaaaaagaaacagcatgttactgg--------caaaaAAGTAAGTCAAAGAAACcaaacagaagatacagaaa-acaCTCGTATACTTTTAGTTATCTGATCTTTCACAAAGGGCATAATGACACAGAACCATT------ATTGAAAACAGCATGAGGATTTTTCAAATattagt

a score=9514
s chr3             7220958 352 + 160039680 AAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACC--ACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA-TTCATGATAAAAGTTCT
s HiC_scaffold_1 185532531 319 + 233722169 AAGTAGGAG-----CCTTCCAACTCATTT-acaaagc--------------taaataaacctgACAAAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAACTG--------------GGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATTTCATAGAAAAATCtct

a score=5629
s chr3            7220969 354 + 160039680 ATTCTACCCAACTCAT-----TTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGA
s HiC_scaffold_1 10107596 338 + 233722169 atTCTTCACAATCCATACAATTGTACAAGGTCAATATAAACATTATACCATAAAGAGATAGAAATATCATAAGAACAATAACATGTTTGCTCATATCATTT-TGAACACAGTTATAAAATTTC--AGTACACTGCCAGAAAACTGAatctaaaaacatat-aaaatgattttacaCAATGACAAAATAGAGTACAT-CCATCAATAATGAATTGGTTCAACACCTGCAAATAAAT-ATTGCAAT---TTACATCAATTAA------------AACCAGATGATAATTTCAATTGATATAGAAAAGGCATTTGATAAATTTCAATACCCTTTTATGGTGAAAATCCTTGATGACTCAAAA

a score=6299
s chr3             7220978 318 + 160039680 AACTCATTTTATGA----AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTC
s HiC_scaffold_1 159471395 289 + 233722169 AACCCACTATATGAGCATAACCtctattaaa---------aaatgacaaaaacagcactctaaaa-ataaaactgcagggcaatctccctaatgaatttAGACACAAAACACT--------------GCAAAATGGACCCAGGA-TgtattaaaagaatgaaattccaTGAACAAAATGGGTTCCTTCCAGG---------ATAGTTTAATATTAGGAGATCTACTAATATAATTCATCACATCAGCAGATCAAAGGAAGAAAACCATATGGCCATCCGGGTACATAATGAAAAGacatttgttaaaaattcatCATCTTTTC

a score=15973
s chr3            7220978 735 + 160039680 AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCAT-GATAAAAGTTCTGGAAAGATCAGGAATTCAAG--------GCCAat----------------acctaaacatgat---------aaaagcaatctacagcaaaccagtagccaacatc-------aaagtaaatggagagaagc------------------------tggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagta-------tatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggccttt-------ctctacacaaagaataaacaggctgagaaa
s HiC_scaffold_1 20135648 797 + 233722169 AACTCATTTTATGAGGCTATCATCACCTGGATTCCATTATCAGACAAGGACTTTATAAGAG--GAAAATTGCTGGCCAACGTCCTTGATAAACAGACATGCAAAA-TCCTTATTAAAATACCAGCAAACTGAATTCAGAAGCACATTCAAAAAATTATTGATCGTGATAAAATGGGATTTATCCTA--GATACAAAAATGGCTCTACATATACAAATCAACAAATG--GTACACCATATTAATGAAATGaaggataaaaatcacacaataat-taaagagatggagggaaataATTTGTCAAAATGTAACATCTTTTCACAAATAGAAACTTTCAACAATTTAAGTATAGAAGAAATGTATACCACTGAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAGTTGAAAATTTTTGCAGtaaggtcaggaacaagacaag--tgcCCACTCTTGCCATATCTATTTAACATGGAACTGGAAGTTCCAGCTACAatgattagacaagagaaaggaataaatgGCATCTTAAGTGGAAAGCATGAGATTAAATTGTTTCTGCTTACAGACAACGTGTTCTTAGAAAACTTGCATAAGAAACTTAAAGGGCTCTACCAAacaattctt-----taataaatgaattcagtataGTTGCAGGATACAAAACTAATGCAA--AAATCAGTTACATTTTCACATACTCACCAAGAAGTAAAAACCaattaataaa

a score=7294
s chr3            7220980 244 + 160039680 CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA
s HiC_scaffold_1 33701942 231 + 233722169 cttattttataaagccatcattatcctgataccaaagtCA--GAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAATATT------------AGCAAATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATGCCAATAAGTAAATATGAAATGTCACATCAGCAGA

a score=13145
s chr3             7220990 421 + 160039680 GAAGCCACTATTACTCT-GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAa---tacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaa
s HiC_scaffold_1 134234716 413 + 233722169 GAAGCTATCATTACTCTTGAttccagaaacagaaaagaacccAGTGACAAAAGCAAACttcaggccaatctctttaataaacacaga----aaaatctaCATAGACATTA--GCAAgcagaatacaacaaatcatttaa---aagatatattatgaGCAAGTAGGCTTCATTCCAAGGATAATGTGATGGTTCAGTTTATGCAAATCAGTAAAAGTAATACATGACGTAAGCATAAGTAGGGGC-AAAATCACATAGTCATCTCAATTAATGCAGAGAAAGATTTTGACAGTAGCAAACACCCATTCAGAATGAACATct--gaaagaaatagatttaaaaaggaattttatataaatctgataaaaaccacTTATAACTAATCGATGGCCAATATCATAGTAAAtggaaagaggcagaaaaaaa

a score=42455
s chr3             7220994 1588 + 160039680 CCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAa----tacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcacca-----------tgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg-------------------------tatagagacagacaagtggaccaatggaatagaa-------ttgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagat----atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttac
s HiC_scaffold_1 232195281 1587 + 233722169 ctagtattACTGTGAttccaaaaccaaagaagaatTCAACCCAAAAAGCAAATTAaaggccaatatccctaatgaatatagacacAAAAGTCTTCAAAAAGACACTGGCAAGGAGAATACAGCAAACCATTAAGAAGACTAT-------GGCCACGTAGGATTCATCCTGGGGATTCAGGGA-GTTGCAGCATACACAAGTCAGTAAGTGTAATACAGCAAAGTAAGGGCGCCAAGGACAAAACCCAGCTGACCACCTCCGTAGATGCAGAACAGGCATCTGACAAAGTCCAAGCCCcgctcatgataaaaacccaagAGAACACTGGACCTGACGGTCAGTCTCTATCTCAAAGGGATGaaa-ccatctgtgacaaaccaacaggtaACATTATATTAGAT-GATCAAAACTGAAAGATtgtattctaaaatcaggaagaagactgggatgtccactatcaccactcctattcaacacagttctggaaacactagccagagcaattaggaaagagaaatgaacaaaaggaatatggataggaaaggaaaaagttaaattatcattgtttgcagattacatgctactctacatagaagaccccaaaaacgcTATCGAAAGACTTTTAGATTAAATAACCAGTT------ACATAACTGGATAGAAAGtgagcactcaaaaatcaacagcatttctgtacacaaatatcaaattcactgag--agaaattaggaaaataatacttATCATAATAGCATTAAAAAGtgt--aatatttaggaatcaatctaacaaaggaaataaatgatcttcatattaaaaattacagtactctgaaaacgGAAATTAACAAGGATATGacaaaatggagagatatccattgctcttgagtaggaagaaccaacatagtgaaaatgatcatactttcaaaattattatacagatttaatacaattccaatcaaaataccactagcatacttc-----cctagagaaaacatttctaaaatttatttag------agaagacctagaataacaaaaacaatt-tgaataacaaaggcaa----ggtagaggCATCACAAAGCCTGACTTCCTGATTTGAAAGTATATTACAGAGTTCACATGATAAAAACAGTACGGtacttgcaaaacaaaacaaaacagaaccgaacaaaaaaacaaacctaagGCTCATTGGAACACAAACAGCTCCAGAAGATGcggaaacaactccaaacacattcagccactt-atctttga---------caaacatgttcactagaagaaagacagcctctttaataaatggtgctagaaacaCTGAAttgccacatgctgaagactaaaactggatCT-TGTCTTTTGCCAGgcactaaagtaaaatcaaaatgcatcaaagatctacgtattgaaacagaaacactcaacCTCCTGGAAGGGCGActaggcagaactcttgaagcTACTGATTGGTGTAGACAAAGATTTTATG-GCAAACCCCCAATCACACAGGAGCTATCACCATCAATCAATGCCTGGG-CTTCACCAtagtaaaaagcttttgcacagcaagagaaaccaccaa-gtGACGAGACAGC--CCCACAATGTGGGAACAAACTTTTGC

a score=36312
s chr3             7221006 2279 + 160039680 TGATACCTAAACCACAGAA-AGATCCAACAAAGATAGA--GAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT---CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat----taactca--aacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcaga-agatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaa----------------tctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatc-gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacaga-----------acagcaa---------------------------------------------tggcttgt-----------gctgtaagatcgagaa---------ttgacaaat-------gggacctaatgaaactccaaag-----------tttctgcaaggc------------------------------------------aaaagacactgtcaataag-------------------------------acaaaaagaccaccaacagactgggaa---------aggat--------------------------ctttacc--------tatc--------------------------------------------------------------ctaaatcagataggggactaatatc--------caacatatataaagaactcaagaaggtggacctcagaaaatcaaataacc----------------------------------cccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgc-tggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactacc----ggaggatccagcaatacctctcctgggcatatatccagaaga---agccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagcca-----gaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactag
s HiC_scaffold_1 107509862 2501 + 233722169 TGATTCTCAAAAGACAtaataagaacaacaaaaacaaacaaaaaacgagACCAATACCTCTAGTGAACATgggtgcaaaaattctcaacaaaatactag-gaAATGAatttaatagtgtatcaaaaaGATCATCCATCATGGTCAAGCTGGTTTCATCCCAGAGGTACAAGGATAACTGAGCACACACAAGTCCAAAAATATAATAGATTACATTAAcagaatgaataataaaaatcactttattatctttatattcAATGCAGGAAAAGCATgcaacaaaattcaacatc---tcctgatAAAAAACCCTGAGCAAATTAGGTGTAATAAAATCATGCCTCAACGTG---AAGGCTTTGTATGACAAACTTA-AGCCAACAT---ATTGAATGACgtaaagttgaaaatatttcttgtacTATCAGAAACAAGAGAAGTGTGTATAGTCTCTCTACTTAtgttcaatatagtactagaag---tagcTGGAGCAAttggataataaaa----ataaaaaaaacataaataggaAAGGAGGAACTGAAATCATCCCTCTTTGCAAATGATGTG--AGTTTGTAAACAGAAACCTATGATCTCCACCAATAA-----TAGAACTGATAAAC----TCAGTAGAAAAGCAGTATAAAAAATTTAGTAGCTTATTGATATGTCAACAGTTTT-----------------------CTGAGAGAAA---CGGGAAAGCAAT-CCATTTACACTAgctacaa--aaagtaaaatattt----atgacta-aataaaggaaatgaataaCCTCCATGatgaaaattacataattttgaTGATGG--attgaagacacacacacacaaaagtaaagaTTTCTCATGTTCCTAGATGGATTGAAAGAATATTGATAAAGTGCCcctgctgcaaaaaaaaaaaaaaaaaagaaaaagtttacaaTCTCAATTTAATCCCTAGcaaaataccaatgacattcttcacaaAGCTAGgaaaaacatccta-aaattcatatggaaacacaaaagtTC-CTCATAGCCAAAGC-AGTCTTgagaaaaaaccaacaaaactagAGACATCACAGTACCTGATTCCAAAACATACTACAGAGCCATAGTAACCCCAACAATATGATTCTGGCGTA---AGAGGCATATAGGCCAATGGAACTGAATAGA--GCACAGAAACagaggaac-------------------------caagaaaaaaaaaatcac----tggagaAAGAACAGCCtcttcaacaaatgatgctgggaaaa-----tgaTATC-CATATACAGATTAAAATCTGATCCCTATCTCTTACTCTGTggaaaagtcaactcaaaatgaatcaaagacctataAGAAAGACCTGAA--ACTGAAactc-tagaagaaaatatagggatAACACTTCAAAACAATGGTATAGGTAATGATTTTCTGGATAGAACCCCCAAAACACAGGaaattgatagaattttcagcgtggaagggaaccatctgataggattttggcgtGGCTAAAAAGGGAGATATGAAATAGaagagacctttattttaagaatgtggggagagactctATGACCCTCCCAGGGTCTGGCATTATCTCcaccagacacgtggtgtgggggcatgtGGCTTAGGTTTGgagtggtgcctaaggggcattagtaatgcacaggtagcccattggtattcatttccgcgccacaggtaaattgcctaggggcgggaaaggtgacctcaGGATAGGGcctcttggttctgcctccaaggctttaccagctacagtgtcccatctggggcaaaatcctttcagaaatGAGCAAGAAATTTGGtaatattaaactaaaaaaactacaccaaaaaggaaacaatcaacagagttaacagaaaatgcacacaactggagaaaatatttgtcaattATTCAAATGACAAAAAGTTATCCAGAATATACAGCAATTCAAAATGCAATTATAAAATGGGACAATGAtctgaacagatacttctcaaataaagaaatataaatagccaACAAATACATGACAAAAGGCTCAATATCATTAGCTATCAGAGAAATTCGAATCAAAACTACATAGAGATAACATCTCACCTAAACTAGAATGGctatagttaaaaa------tattaacaaattcatGATGAAGA-----AGATAAAGGAATTCttatacattgttggtgggaatgtaaactagtatagcAACTATGGAGAACAG---------TTCTCAAATATCTAAAAGTAGCTTTATCATATAGATGATCCAAATATCTTACTTCTGGATATTTAGCCCAAGGACATAAAATCAGCATAGCAAAGAGACACCTGCACACTTATGTTTATTATGGTACTATTCACAACAGCTAATACTGTATATGGAGTCAGCCTAAttgcccatcagcagatgaac--aTAAAAAATATGTAGT-TTTATGCACAATGAAGTATT-TTCAGCCAT---AatgaatgaaattctgtcatctgCAGCAAAGTAGATTGAACCAGAGATtaatatgttaagtgaaaaaaagcaGACCCAGAAAGACAAGTACTACGTGAGCTGTTTCAtatgtggaagctag

a score=12946
s chr3             7221021 1763 + 160039680 AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTC----CAGGGATGCAG-------GGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAata---cctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacctt--ttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggata-------gcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcat--------ggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatc---atgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaa-attggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtg-ctgtaagatcgagaattgacaaatgggacct-------aatgaaac---tccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctc-agaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgagg-aataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaaca
s HiC_scaffold_1 124838658 1529 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaa--atttacaaaataatggcaaatcaaattcagtttaatgttaaa---ataatacatcatgaccaaattgCATTAGCTCTGAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAATCTTG--aactttttttctattattataaaCAAAGTAAACATATCAAC--TCTTATTACTCTAATTTAACATCATATTGAAATT-----------CAATaagatgagaaaaaga-ataaaaggcatAGATActgaaaaggaacaaataaa------actATTCAGAGATTACATGATTGCTCATGTA---GACTCTGAA--------------------------------------CGGGAAAA--------------------------------------------TACATTAAAgataaa--------------------------------------------------------------------------tctaataaaatatgtgCAATATTTGCATACTAAAACCTAAATATTATaggggaaataaaatatttaaaat------aaaaagaaaaata-catgcacTTGTAAATTGGAAGACTCAATGTTGTTGACATCTAAATTTTTTCCAGGTTGATCTACACAGTCAATATGAATCCAATGAAAATCCCAG--CAGGCCTTTAGTAGAGCCCAATGAACTGATgaaaaaat------gtataagaaaaattgaaggaaataCAACTGCTAAAGCAATTTTTAGAAAGAGCAAAA---TTGGAGGACT---TATACTCA--CAAGACATTTAC--AAGAGTTATCAGG----AAACCACATACTCAGAGAGTGATGTTATAGTG--AAACAAATGATACAATGATA---AATGGAAAACTCAGAAAC--------------------------------------AGGTCAAAATAATTTCATGGTGGCAGGGTAATCTATTATACAAATGGTACTG---CAGCAGTTTTCTATCCATATGCAACAAAATTTATCTCCATACATAAATTAAAttatacacaaaaattaattgGAAATTGATC-ATGACCTAAATGTTAAACCTGAAAGCTTAAAAATTCTGGAAGAAAACATAGAAGAGAAACCTTGTGACAGTGAG--TTAGGTAATATTTATTAGGCAGAGTA--AAAGATTTACGACtcataaatgaaaaattgttacatggaatttttttcaaaattaaacacttcTTATATTT--------------ACACTTTTAAGAAAGtgtaaatacaaaatattaactagatgaaaatattttcaaaatatatgtcaAGTA-AAGACTGCTTTTGAAAATATGTGAAAGACTTTCATATTTCAATTACAAGGAAAAGTAAGAACCCAATTTAAAACtaagcaatatattttta-aaagaagtttcaTCAAATTCAATATATTACtggaaaaaagcatttgaaacaatGCTCAACAACATTAACAACTAGAGAAATGTATGTTAAAACA

a score=9023
s chr3             7221036 667 + 160039680 AGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatg---ataaaagcaatctacagcaaaccagtag--ccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccact--ttctccctaccttttcaacatagtacttgaagtattagccagagc---aattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaaca
s HiC_scaffold_1 173578727 609 + 233722169 agacagaatgtagcaaatcagtAGCCCTTAGGAACATAAATATACAAATCCTCTACAAAAGTTTAGCAACCTAAATCTCATGATAAGTAAGAAAAACAATATGTTTTAATGAAGTGGGGCTCGTCCCAGGGGTGCAACTCTGGTTCGGCATTAGAAAATCAAACAAGGC-ACCCACCCTACTAACAGACTAAAGGAGAAA----------------------CTGCAGAAAGATTCTTTAACAAAATGCAAAATCCTTTTTTGATAAGAATTATCAACAAACTAGGAAGTGAAGG-GAGCTTCTTGACTTGGGCATAAAATC---------CCAGGCAGTGGGATCACCTTGATAGTAA-------------GGACCTACGTCCTTTCCTATGAGGG--------CGGGAGCACACTTGTCATCTCTGACCTCTAGCTGTCGTA-----------AGTCAGAAACTGAAATaggcaaggaaaagaaat-aaaggcatACGGAGtggaaaggaggaaataaagctGCTCTTACTCTTAGGTAATACGATCATTTACACAGAAACTTCAAAGATCTACACCAAAG--CAACTAGGACCGATAAGTAAGTTCAACAGGGTCTCAGGATACAGATTCAGTATAAAAACATCAATTGTGTTTCTCTATACTAGCAGTGAACA

a score=38313
s chr3             7221042 2255 + 160039680 AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG-CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaa--------------------gcaatccca--------------------------------------------------------------ctaaaa----------------------------tcagggactagac---------aaggctgcccactttctcccta---------------------------ccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggataca-aattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaa-caggctgagaa----agaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaag-gataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaat-tgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatact-tatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaaga----tcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctca-gaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatgg-ctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactagcccaaaacctag
s HiC_scaffold_1 123227521 2221 + 233722169 aaaactacaggacaatttatttaatgaacatagatgcagaaattcTCAATAAGAGTCTGGCAAACAGAGTGCAACAACTCATAAAAAAGATCAGAC-TTAAGACCAAGAAGTCTTTATCCCAGGAATGTATGAGTGGTTCATCATACACAAACCAATACATATAATGCACTACATAAAAAGaggcaacaacaaaaatcac---atcatctcaatagacgaaaaaaaaagtcttcaatataat-------ctgttcatgataaaattctgaaagaaaagagGTATGGAAAGGCCttatc--aatctgataaaagttattTAGTACAGACCTCCTG-CAACATCATGCTCAATGAAGGGAAACTAGCAAGGCCTGGtgctgcatgtctgtaatcccaactctcAGTAGTCTAATGCCCAAGGTTCACCGTACATTCGAGGCCGTGCTGAGTTGCCTTACTTAAAACCATTCTGAACTATGTAGCAGCTCtctgtcaaaaaataaacaaatagggGAAAACTGAAAGCTTGTCCTCAAAAACCAGAAATAAGTCCAATACTGAACTTCTGTCAGTATAGTACTTGAA--ACTACCTACAGCAATCAAGCAAGAGA--------AAAGTGATCcataataggaaaggaaaaaatc--aacTTCCCCTTCCACATA----------------AAGAATAGCCC----AACTCCACATCATGAATCCTAGAACtgataaa----ttcagcaaggtaaTAGGACACCAAATTATGTGAA--AAATCAATAGTGCTTAGATTCACCAATAGTGAGTCcatctgaagaaaacaaaaaatagaaaaacagtacCATGC-AGctagcttcaagaaaaattaaatacttaggaa-----ctaGCAAAGAAAGTGAAAG-CATATGTAACAAAAACTGTAAG------------AGGATTGAAGAGGAcattgaaaaactgaaagataactt-tgttcctggataggcagaaccaatgttTTCAAAGTGTCCATGCTACCAAAAGCAGTGTA-----TTAATACAGTTGCAATAAAAGTACTACCAACATTCTttacagaacttaaaaaa--aaatgtaaaatttatatggaaccagaagagccccagaatagcaaaaaatcaccctaggcaacaaaagcaaagcaagaggtaTAACAACCTTGGATTTTAAACtatattacaaaactacaaaaaataaaaacaacattgtACTGACATGAACACAGACATATgaaccaatggaacagaatagaggatgcagaa---aaatCAGGCACAGTCAACTATCTGATCTTtgagaaaggggccaaa--catgtattGCAGAAAAAATTGCCTCACTACAAAATGTTTCTGGGAAAACTAGCTATACATAATCAGAAGATTG------AATCTATACCATGTCTCT---CACTAGAGTCTA----AAAgggatcaaaaatatttaaatacaa------atactT-AATTTACTGAGAGATGACTGGTAAAACTCTT----GACATGG--ACAGGTAAAGTCTTTCTGGACAGAATCTCAATTGC-------ATAAGAAATCCCAAAAATCAACCAATGAGA-TTGTCAGTTTTAAAAAGCTGCTGTCCAGTGAAGGAAATACCCAGAAGAATGAAGAGAC--Tctacagaa-gggaaaaaatttttgcaagTTACTCCTCAGCCAGACgactaatatctaaaa-atataaagaa--aaaaatgttagaccctaccaaaataaaagaatc------aaaaagggcaattaaaatg----agaaaattttca---gaagtata---aatggccgaagtatacatgaaaaaaatgtgcaccatctctggccattagTGAACTGCAAATTAAGATaacactgagtttccatcttactccagaaagaatggtttatgatcaggaaatcaaa-aataacaaatactggcaaagctgcagagaagaaggaagccttctacattgttggtggcagtataaattagtacaaccactatgcaAACTCATATGGAACAttctcaaaaatgtaaaaataa-------ggtTGAGCCATTAAGtgtccttctaggtatcttctcaaaaca-----------gttaaagtgatatatgc------atacttgtggcagcacaattcataatagctaaatcttggaagtggcccaTGTGTC---CAACAG----ATGGACAATggaa-----------------aatggagtactactttgtta-taaaaaggaaaaatgtgagtcatttgtaagagAATGGATGCACcgtgagaccataatattaagtaaatca-------tacacacaaacttaaatattgtacattttcttatatgagaaaaccaatATATAACTTAG

a score=16636
s chr3            7221056 521 + 160039680 ATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagt
s HiC_scaffold_1 45948648 466 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaaaacattagccagagctgTTAGGTAAGtggcagaaataaaaaggatttgaaTAACAAAGGGAGAAGTCAAActattcttattttcaaatgat-tgataat

a score=5472
s chr3            7221197 239 + 160039680 ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaaca-tgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagaca
s HiC_scaffold_1 68361097 231 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT-ATGCTGGAATCATacagcaaattaaaaatagaagagaactATCTCAATGTtgacaaagaatatttttaaaaa------ggcc--tatAATACTCAAAGGTGGTATGTTGGATACTTTCCCCATAAGATCAGGTAAAAGGCA

a score=9083
s chr3             7221231 377 + 160039680 ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc---actttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccaga
s HiC_scaffold_1 169467336 320 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAAT-AGGAATAgaatgtctttatctcaatctgata---------------------------------ataTGAAAAGAAGAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAATGTATTTCTCAAgtcattagtcagagcaattaaacaagaggaagaaatacagt-----------------gaaaaaattaaattatcattatttcttacagatgacac-----tctatata---gaactccaaaactgcatgaga

a score=5628
s chr3            7294030 196 + 160039680 CTCATCTCAGGTCCTCTCTGCATGTTCTCACCCATAAGAGGACCA-ACAAGTACAAACTCAGTACCCAAACGGGTCCACACCTGACTCTTGCCCAGAGGCAG---TGGGCCCAAG----------CAGGGAGGCCCACTAGGTGCTTCTGGAGGAGCCCT-GTGAAGGCCATGCTAAAAGTCAAAATGGCTGCCACAAGGATGCCCGCACC
s HiC_scaffold_1 13552628 199 + 233722169 CCCACTGCAGTCCGTCTCCTCGGGTTCCCGATCtcaagaaaaatacacaaaagcgAACTCGGTACCCTT-CTGCCCCACGCCAGACTC----CCAGAAAAAAGCTCGGCCCCAAGTCCCGGAGTCCGGGGAAGGCC-------GCCTCCGGAGAAGCCCCCGCAGACGCCATACTAAAAGTCAAAATGGCTGCCCCAAGGAAGCCCGCACC

a score=14665
s chr3             7455302 503 + 160039680 acaaaaaagaaaacCAATAAAAGACCACTATGTTTGATGACATAGGAAAAAAATTTTCTAATGAATCCACAAAATGAACTGAAGATAAGGCCTTTCGTGAAAGCTCATCTAAACTGTGATAAAGACAAGGAACTGATGAAGCTCACTCAGTACCTCAAGGAGATAGCCGGGCTTGATGCCTTCCTGGAGCTGAATCACAAGGACTG------GTATCTACCAGAGGAGCAAGAACAGTAGTGACACTCAG--AGCTGGAGATCCCTGGGGTTCGTGGGCCATTGTTCTT---TGCTAGGCATTACCACAGTTGTGCTGGACACTGAAGCAGATGCCAGGC-----------AGGCTGCTGAG--CTTTGTAAATTCAATTTTGTAATTTTTTGAAGATCATAACAAAGTGC--TAAAAATATGTTCTCTTCTCTCTGTGTTAAT----TTACTCTTGAAAAAATGTCCTCAGGCATTAACTATTGAGGTGTTTCCCAAACCCTCTAAAAATGCAAAAATAAAGGAAAATGAAA
s HiC_scaffold_1 118293725 497 + 233722169 acaGCAAGAAAAACC---------TCATTATGTTTGATGACATAG-CATGAAATTTCCTAATGAACCCACAGAATGGGCTAAAGATAAGCCCTTTCATGAAAGCACACCTa-------gttaaaacaaagaattttttaaattaactcatTGCCTCAAAGAAATAGCTAAATTAGA----TTTTTGGAGCTAAATAACAAATACTGGGAAATGTATCTCTCAAAGATGCAATGACAGT--TAACCTGAAGATATCTGAAGATGTTTGAATTCCATGAACT-TTGTGCTTTTATGCTAGAAAT---CATGATAGTGCTGGACAATGAAGTAAATATCAGACTGCTTATCCTTGGTCTTCTAGGTTTTTTgtaaatttacttttata--tttttgataatcATAgcaatatgcttttaaaaaatcctttttccCCTCTATGATTATACTGTtactgttgaaaatattttttctggtg-GGATTACTGAGGTGTTtccta------ctaaaagaaaaaaaaaaaagaagaagaaaa

a score=8851
s chr3             7456394 191 + 160039680 TGTTACTTGCAATGCTTAAGCCCGCAGATATATAATGTGACTATTGTTTTATGTTGACAGTATTGCTGTATACAGTTCTTGTA-TGGAAGGGAATTTCTCCTTTTAAATAAACATGCTGTACATTGTTCTTATGGGACTATTTCAGTGGTGTAAATAATAAATATCTTTTCTTAAAACAAACAAAAAATTAG
s HiC_scaffold_1 118294388 182 + 233722169 TATTATTTCCAATGCTTACATCTGCAGATATGCA-TGTGACCACTGTTTTGTGTTGATAGTACTGCTTTATACAGTTCTTGTATTTGAAAGGAATTGATTCTTT----TAAACATGGTGTATATTGGTTGTACAGGACTATTTCA-----gtaaataataaatttcttttgaaaaaaggaACATAGCTTTAG

a score=3828
s chr3             7646558 107 + 160039680 TCGTTACA------ACAGTTAAAGGGTTTCTCCACAGAACAAATTTTCTGATATTAGAAAAGGCCTGCCCAATGAATAAAAGCTTTTCCACACTCCTTACATTCATATGATTT
s HiC_scaffold_1 171108488 113 + 233722169 TTGTTACATTTCTCACACTTATAAGGTTTCTCTCCTGTATGTATTCTCTGATGCTGAATAAGACCTGAATTTCGGCTAAAGGCCTTTCCACATTCCTCACACTTATGAGGCTT

a score=5490
s chr3             7646566 262 + 160039680 ACAGTTAAAGGGTTTCTCCACAGAACAAATTTTCTGATATTAGAAAAGGCCTGCCCAATGAATAAAAGCTTTTCCACACTCCTTACATTCATATGATTTTACCCCAGCAGGAGTAGCCCTATCAAACAAGGGGGGGAACTCATGCTTGAAGGACTTCTCCATGTACCTTGCATTCAAAGGATCTTTTCATTTTATGAACAACTTTATTGTTATTAA---------TTTTGCTGCAAAGAGGAAAAGCGTTTTCACAGTCTTTACATTCAAA
s HiC_scaffold_1 160379962 261 + 233722169 acattcaTATGGTTTCTCCCCGGTATGAACTCTCTGATGTTGAGTAAGACCTTCAATTTGTTTAAAGGCCTTCCCACACTGATTACATTCGAAGGGATTTTCACCAGTATGGGTTCTCATATGGTAAGTAAGAGATGAGCTATGTCCAAAGG-CTTTTCCACATTCATCACATTTATAAGGTTTCTCTTTTGTATGAGTTCTTTGATGTATAATGAGGTGTGACTTTTTGCTG---------AATGTTTTCCCACACTCATCACATTCGAA

a score=26828
s chr3             7893312 605 + 160039680 GGAGGACCAAGTGACAAGCAAGATGGTGCAGACTGAGGGCACCAAGAAGAAAGTCTGTTACCTCTACAATGGGAATGTTGGAAACCACTATTATGGACAAGGCCACTCAATTAAGCCTCACCGAATCCACATGAC-CACAATTTGATGCTCAACTATGACCGCTACCAAAA--TGGAAATCTATTATCCTCACAATGGATGTGATTTTAAGAGTGGTGGTTATAAGAACTGAAGAGATGACTAAGTACCACAATGATGACTAAATTAAATTCTTATATTCTATTTGCCCAGATAATGTGTCTGAATACAGCAAACACATGATGAGATTCAACATTGGTGACATTGATGACTGTCAAGTATTTGATGGCCTGTTTGAGTTCTCTCAGGTATCTATTGGTGGCTCTGTGTCACGCCTTGTGAACCCTACTAAGCAGCAGAAAGACCTCACTGTGAACTGGTCTGGGGGCCTGCATCATGCAAAGAAGTTTGAAACATCCGGCAGCTGTTACATTAGTGATATCGTCTTGGCCATCCTGGAACTGCTAAAATATCACCAGAGTGTGCTGTACATTGACACTGATATCACCGTGATGATTGCAGAGAAGAGG
s HiC_scaffold_1 175735878 566 + 233722169 GGAGGGACTGGAGGCA-GCAAGATGATCCAAACTCAGGGCACCAGGAGGAAAGCCTGTCACTACTGTGACTTGGATGTTGAAAGTTACTGTTACGGGCAAGGCCATCCAGTGAAGCCTCAGCAAATCTGCATGACTCACAATTTGCTGCTCAACTATGGTCTTTACCAAAAGATGGGAATCTGTCACCCTCACAAAGCCAGTG-------------------------CTGAGAAGATGACCAAATACCACA-TGCGGATTACATTCAGTTTTTGCACTCCATCCGTCTAGATAACAAGTCTGAATACAGCAAGCAGATGCAGAGATTCAACATTGGTGA------GGACTCTCCAGTATTTGATGGCCTGTTT---TTCTGTCAGTTGTCCAGTAATGGCTCTGTGGGAAGTGCTGTGAGACTTAATAAGC-GCATATCGGTATTCCTGTGAATTGAGCTGGGGGCTTTCACCATGCAAAGAAGTCCGAGGCATCTAGCCTCTGTTATGTCAGTGATACTGTTTGGGGCATCCTGGAACTGCTGAAGTATCACCAGAGAGTGCTGTACATTGACAT-----TCACCATGGTGATGGCATGGACGAGG

a score=5059
s chr3            8015874 282 + 160039680 TCTTAGAAATGGCTTAAGTTTGTCTTTAAGTTATATGTTGAAAGCTTTATTTCATACTGAGAAAGTATGGCGATGTTGGGACATGGAATCAGTCTTAAGAGCTGGGATCTAGTAAGAAGTAATTTAGTTTCTAGGGACACTGAACTCAATAGGAGATAAGATAGTTCTTATAGGACCTGACTCAGTTATCACTAAAATTGTCATCAAGTGTAAAACTgggtct-----ggagagatgcctctatgtgtaa---aagcactt--gatacagaagcatgagagcttgagtattg
s HiC_scaffold_1 16341367 256 + 233722169 ttttggaGATGGTTTGACTGTGT-------TCATGCTTTGGAGGCTTAGTCCTT---------AGTGTGGTAATGCTGGGAGGTGGTATGAACTTTAAGAAGTGGGACCTAGTGGGAGGTTATTAGGTCATTTGGGGCACTACCCTCAAAAGGGATTAAGGTAATTCTTGT-------------GTT-----TCAAATTGTTAT-AAGAACAACACTTACTCTAGCCAGGGGAGGTGAtgcactctgtaatcccagcacttgggaggctgaggcaggattg-ttgagagttg

a score=5912
s chr3            8609843 152 + 160039680 TAATGGTAGATAAGACAGGAAAGAAAAGGAATGGAAATGGAGAAATCAAAAATTAAACTTTAA---------AATAATTGACC-------TGCTTCTCTCTTAAGGAACTCAAGCTATGGTCATCTTTCTAGCTCTC-CTACAACCTCTAGAACCCCATTGGGAAATAA
s HiC_scaffold_1 53988988 169 + 233722169 TGACAGGAGATGGGCTAGGAAAGGAAAAGGGCATcaatggagagaaagagaattaAATTTTATCTTGATATTAACAATGAAGCCTATTTATTCTTCTCTCTCAAGGAACCCAAGGTATGCTCATCTTTCTAGTTTTCATTATAATCTCTAGGATCCTATCAGGAGTTAA

a score=34465
s chr3            8615070 1513 + 160039680 GAGGGGTGCATCAAACTTTATTGATGGTATTCAAGAGGGTAAGGAGAGTTCCCTAGGTCCCTCCTGTTATTATGGGACTCTGGAATGGAAATC----GTGAGGGTGATGCTCAG--TGTTG-GGGTCCGAGTTGGGACAGGGACTCCTCAGCACCCGAGGGCCTCTCTCTTGCTCTCAGTGTCCTTGTTGGAGTAGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCTATGTAGGCCATGAGGTCCACCACCCTGTTGCTATAGCCATATTCATTGTCATACCAGGAAATGAGCTTTACAAAGTTGTCATTGGGAGCAATGCCATCCCCAGCATCAAAGGTGGAGGAGTTGGAGTTGCTGTTGAAGTCTC--AGGAGACAACGTGATCCTCAGTGTAGCCCAGGATGCCCATTAGTGGGCCCTCGAATGCCTGcttcaccaccttcttcaccaccttcttTTTAAAGAAAAAAAAAAGAAaaagaattatatgttttatgtatatcagtacactgatgctgtcttcagacacaccagaagagggcatcggatcccattacagatggtagtgagccacaatgtggttgctgggaattgaactcaggacctctggaaaagcagtcagtgctcttaaccactgagctatctctctagtccTTCACCACCTTCTTGATGTCGTCATATTTGGCAGGTTTCTCTAGGCTGTGTGTAAGATCCACTATAGATACATTGCAGGTAGGAA---CACAGAAGGCCATGCCAGTGAGCTTTCTGTTTGACTCTGGGATCACTGTGCCCACAGCCTTGGCAGCACCAGTGAATGCAGGGATAATGTTCTGGGCAGCATCATGGCCACCACACCACAGCTTTACAGAGGGGCCATCCACAGTCTTCTGAGTGGCAATGATTGCATGGACTGTGGCCATGAGCCCTTCCACAATGCTAAAG-TTCCATGGATGACCTTGGCCAGAGAGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAAtgagttgtcatatttctcatggttcacacccatcacaaacatgggggcattggcagaaggggtggagttgatgaccctttTGGCCCCACCCTTCAAGTGGGCCCCCGCCTTCTCCATGGTGGTGAAGACGCCCGTAGACTCCACGACATACTCAGCAAAAGCATCACCACATTTGATATTAGCAGGATCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCAGCCTTGACTATGGGGTGGAACTTGCCATGGGCAGAGTCAGACTGGAACATGTAGAGCATGTAGCTGACATCAATGAACGGGTCGTTGATGCCCACAATCTCCACTTTGCCAAATGCAGATCAGGAGGCAGCCCTGGTAACCAAGCACCCAATACTGCCAAATCTGCTCACACCGACCTTCACCATCCTTTCTACAGGACAAGGCAGGCACTGCACAAGAAGATGCAGCTGTCTCTGGGACAGGGAGGAGCAGAGAGCCAGTTCC
s HiC_scaffold_1 97936683 1227 + 233722169 GGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA------------TCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctcttttcat-----ttcttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAG-CCAGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCT----------------------------------------------------------------TACA---------------------------------------------------------------------------------------------------------------------------------------------------------------GATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAA---GCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATAGG--------ATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATC--CAGTCTTCTGTATAAGAAGGATGACCTG----GTGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATA-AATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGC------CTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaaaaaataaaacagatcc

a score=23008
s chr3           8615167 1398 + 160039680 GGGTGATGCTCAG--TGTTGG-GGTCCGAGTTGGGACAGGGACTCCTCAGCACCCGAGGGCCTCTCT--CTTGCTCTCAGTGTCCTTGT--TGGAGTAGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCTATGTAGGCCATGAGGTCCACCACCCTGTTGCTATAGCCATATTCATTGTCATACCAGGAAATGAGCTTTACAAAGTTGTCATTGGGAGCAATGCCATCCCCAGCATCAAAGGTGGAGGAGTTGGAGTTGCTGTTGAAGTCTCAGGAGACAACGTGATCCTCAGTGTAGCCCAGGATGCCCATTAGTGGGCCCTCGAATGCCTGcttcaccaccttcttcaccaccttcttTTTAAAGAAAAAAAAAAGAAaaagaattatatgttttatgtatatcagtacactgatgctgtcttcagacacaccagaagagg----gcatcggatcccattacagatggtagtgagccacaatgtggttgctgggaattgaactcaggacctctggaaaagcagtc-------agtgctcttaaccactgagctatctctctagtccTTCACCACCTTCTTGATGTCGTCATATTTGGCAGGTTTCTCTAGG--------CTGTGTGTAAGATCCACTATAGATACATTGCAGGTAGGAACACAGAAGGCCA-TGCCAGTGAGCTTTCTGTTTGACTCT----GGGATCACTGTGCCCACAGCCTTGGCAGCAC----CAGTGAATGCAGGGATAATGTTCTGGGCAGCATCATGGCCACCACACCACAGCTTT-ACAGAGGGGCCATCCACAGTCTTCTGAGTGGCAATGATTGCATGGACTGTGGCCATGAGCCCTTCCACAATGCTAAAGTTC-CATGGATGACCTTGGCCAGAGAGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAAtgagttgtcatatttctcatggttcacacccatcacaaacatgggggcattggcagaaggggtggagttgatgaccctttTGGCCCCACCCTTCAAGTGGGCCCCCGCCTTCTCCATGGTGGTGAAGACGCCCGTAGACTCCACGACATACTCAGCAAAAGCATCACCACATTTGATATTAGCAGGATCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCAGCCTTGACTATGGGGTGGAACTTGCCATGGGCAGAGTCAGACTGGAACATGTAGAGCATGTAGCTGACATCAATGAACGGGTCGTTGATGCCCACAATCTCCACTTTGCCAAATGCAGATCAGGAGGCAGCCCTGGTAACCAAGCACCCAATACTGCCAAATCTGCTCACACCGACCTTCACCATCCTTTCTACAGGAC---AAGGCA-GGCACTGCACAAGAAGATGCAGCTGTCTCTGGGACAGGGAG
s HiC_scaffold_1 9527184 1204 + 233722169 GGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAG-CAGGGA-TCCATAGCATGAGACAgtctttctttcttactct-----tcCTTCTCCTGGAGCTGGTGATCC-GGAAGGCCCAATCCTTGGATG---------------------------TCTTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATT--------TCCCTGCCCCCTCACCAACG---------------tttctatt----tttc------------tatctatAAAGTTTCCCAAAGTG---------Gttcttttgaata----------------------------------aaaaaaaaaaaaaaaaacaaaaaccaactatcctattttttt--------------ttttttc-------cctaaagagGAAGAGCAT---ATACCACTGTTAA--------AGTCACA------------GGAATCAACCT--GGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAGGATT-------CCTTTGAGCCCTGGTTCACCATCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTC-----TCACTCTTGTAGGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGG---------------------CTCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC----TGGAGTTAA--AGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=3709
s chr3            9140074 53 + 160039680 TGGTGTCCTGGTAGTTCGTTGTGATTATATAGTGGCTAGTACTCTGCAATGTG
s HiC_scaffold_1 35308797 53 + 233722169 TGGCGTCCCGGTAGCTCGCCGTGATCGTATAGTGGTTAGTACTCTGCGTTGTG

a score=4151
s chr3            10015507 67 + 160039680 CACCAGCAATGGGACGGGAAGGAGAGCACGATAACAAGAAAACTGAAGGATGGGAAGATGATCGTGG
s HiC_scaffold_1 223200911 67 + 233722169 CACCAGCAGTAGGATGGGAAGGAAAGCACAATCACCAGAAAATTGCAAGATGGAAAGTTAGTTGTGG

a score=9447
s chr3            10016065 270 + 160039680 GGAGTGTGTCATGAACAATGCCACCTGCACTCGGGTCTATGAGAAGGTGCA--ATGAGGGCTTCCTCGTCATCCTGGACAGGAGTTAGCTGCCAGAGTGAATATGCTCAATTCAGTGAGCGGTCAAATGCAACAAACAGCTTCACTTCTTTGGTT-TTATTTTTCATGACTGTTGAGTTCTCTTTATCACAAACACTTTACATGGACCTTCATGTCAAACT--TGGTTTACCCAGGATCATTCCTTTGGTTAGTAAATAAACGTGTTAGTGCTAA
s HiC_scaffold_1 223200976 254 + 233722169 GGATTGTGTCATGAACAATGTCCCCTGTACTCCAGTCtataaaaaaaagcagaataaatattCCATCATCA-CCTGGACAGAAATTAGCTTTGAGAATGAATAAACTCAGTTCAGTAAGC----AAATCT------CTGTATCCTTTTTTTGGTCATTACTTT--------GGTCAATTATCTTTATCACAAGCATTTTACATGCAACT--ATTTCAAAGTGTTGATTTTAGTAGGATCATCTGTTTGGTTAGTAAGTAAATATGTTTATGCTAA

a score=8401
s chr3            10509732 250 + 160039680 TTCTCTTTT---AGTCTCCTTCATTCTCAAGGTGGAGTCAGAGTAGGTGATCCTGAGGTAAGTCCATCACT---ATTACTAACATATTCTCATAGTGCGATG-TAGGTACACATGGTGGCTTC-------TGTTTATCAGAGCATAGCAGTCAATTAGCAAAA-Cataaaataaaata----------------------------------aaaaaaataataaatt---------------------------------GTGCTACTTTACATCTTTTGCATCTTTCTCATCAGCTCACAGGCTCTACCCAAGAACTCTTCCTAACAGCT
s HiC_scaffold_1 128918705 332 + 233722169 TCCTCTTCTGAAAGTACCCTTGGTTCTCGAGGGGGGGTCAGAATAGGCGCTTCTGAGGTAAATTCATCGTCGAAATTACTAACATCCTCCCGTCCTCTGATGGTAGGGACAAATGGCGGCTTTACTTTTTTGTCCATCAAAGCACTCCAGTCAATTAGctgaatcataaaataaaaaatgccctGGTTAGCCTCCTACTTTGTtcataaaccaaaacaaacctaaaCTTCTGAACTTTATCATACTTACCCGGAAAAATGGATGCTTCTTTACATCCTCTGCATCTTTCTCCCCAGCTCCAAGGCGTCGCTCAGGATTTCGTCTTAACAGCT

a score=38162
s chr3            10752976 1180 + 160039680 AAGGGTGAAATG-TACTTTTATTGAGTTTTATTGAAATTTAAATTCCTATGTACATGCACGTATATGCATGTAAATGCAAAAATAGCAATGACTTTCCAGAGA------------TTTTACCTTTCATATGGAATTTTATCATGAATAAAAAGCTTACAACTCCTTTCAACCAATGCAGATTTACATT-ATGCTAATATTCCTGCTTGCTGTGCTTTGAAGAACTGCTACATAATATAAAATGACCTTACCTTAAAGTTTAGAATAGGTAGTGCTCTTTCATATTGATCAAG-TCTCCCTCATACTGGCATCGGAAAGACAGAGTGCACTTAGTTCATATCA-AAGTATGTCAATAGACCTCAAACTGTGTAGGAAAGCAAATAACAATTTTCTGAAAAGTTCAGAGTATCAAAATAGCTACTGGTTAAGCAGAAATGCACGAAACTCCATTTATAGAACACAACAGCAACAAAAGATGGTAACATCCTACAAGTACTAAAGAAGAACAAGCTTACAAATATTGCAAGTGTCTGTCTTTCCTGCCCCTAAAA-GGTTTA-TCACATCAACTGAGAGTAACATCAATaaagaaagaaagaaagaaagaGTAAACAGTATTGGTGCCCACCATTCAGCAGCCTCCAGAGCATTCCTTACAGTTTTCAGCC-ATCTCAGTTAAGAGTTGT-CTTATAACAGATG--AAATAAAAAAA---AAGCAACATTACTTCATAGGGAAATATAAAAAACAATTACTGTTAATTTCATGAAGCATTTGAAAGTAATTCTGTCTTCATAAATAGCTAAAATGGTGTTTTTT-------ACAGTTTTAATTATTCTTGCTGTGAAAAAAATACTCAAAATGACATCAATCTTTGTAGATAAACATTGGTTATTTCA------TATATTTGGAAACCTGAACCACATTTTT---CGATTGCTGGTGGTATGCGTTGTTCTTGGTAGGAACACTTTTGTTTTTTTCTCTTTTAATCCTGATTATAAACCCTGGCTATTTTGATGCCTGTAGTTGTGAAATTGATCTTGAAGACAGTTGTGGTCTTTCTCAAGAGAATGAAGATTCTTTGTAGCAGTTGATAAATTCTTTTCCAACAATGCCTGAGCTTCATCAATAATATATTTAGGCATCACATTAGTCCCCAACCATAGGCACACTTTATCAGTAGGA-ACACTGAAGCTTTGCAGTCCAAGT
s HiC_scaffold_1 220513859 1119 + 233722169 AGAGGTGGAataatacatttgt--atttttactcAAATCTGTATTACTCAGTGCTTGCCACTGTAC--------------------CAGAGGTTTTCCAcagggatttcttttctttttactattccTATACAGATTTATTGTGCATAAAAGGCTCACAGTTCTTTTCAACCATGGCAGATTTACATTTATCTTAACATCACTA-----------TGAGGGAATtgttaagaaatataaaattacctTAGCTAAGTGTTTCCAATGCATACTACTC---CACATTGGCTAAGATATACTTTATGCTTTTACTGGAAAGACAT-TTGCATTTACTTGGCATTAGAAGTAGTT--GTAGCCCTTA--CTATTTAGGAAGACAAATAGGCATTTTCTGAAAAGTTCACAATATCATAATAGTTATTG-TCAAGCAGTCACTCACAAAACTCCAATGACAGACGACAACAGCTATAAA-----------TCTTACAAATactaaaaaat--taagtttataaatACTGAAACTGGCTGTCTTTTCTACCTTGAAAATGGTTTAACCACAT-------------------------AAGTCAGTAAGAA---GTAAACTGTGCTAATGCCCAGCATTCAGC---TTCCATAGCATATCT--CAGTTTTCCACTGATTTTAGCT--GAGTTGTGTTTATAACAGATGCAAAATGAAAAGACGAAAGCGCTATTAATTTGTttggaaatgtgaaaaa----tattgttAATTTGATAAAGTATTTGaaactaattttgtttttataaata----aaatggtgTTCATCTTCAAAAACAGTTTTAATCATTCTTGCTCTTAAAT---CACTCAAAGTTATATCAATCTTGAAAGAAAAACGCTGGAGAATTTAAAGTTACATGTTTGGAAAAGTGAATGACATTTTTAATCGCCAACTAATACGACACTTTGTTCTTGGtagattcatttttgtttctt-cttttgctatCCCAATTACAAACTCTGGCCACAGTGACTTCTGTTGTAGT-AAACTGATCTCGAAGAAAGTCAAGGTCTTCCTCAAGAGAATCAAGGTTCTTCATGGCAGCTGATAAATTCTTTTCCAACAAGGCCTGAGCTTCATCAATATCATACTCAAGCATTACGTTAGCTCCCAGCCACAAACACACTTTGTCAGTAGGAGGAACCCAAGCTTTGCAGTACAGGT

a score=6530
s chr3            10754295 133 + 160039680 GTTCCATAAAATTATACTTCTAATATTGTTAATCTGACTTCTTTAATGCCATGTCTGCAGTCTCATTTCCAGGATGTTTCATGAAAGAATCCACACCATCCACACACACTGCTTCAGGAGTCTCTGGGTGGAG
s HiC_scaffold_1 220515082 133 + 233722169 GTTCCATGAATCCATTCGTGGGGGCCTGTTCATCCAGGTTCTTTAGTACCGTTTCTGCGGTCTCATTCCCCGGCTGCTTCATGAAGGAGTCCACGTCGTCCACAAACACAGCCTCAGGAATCCCCAGGTGGAG

a score=26175
s chr3           11008773 593 + 160039680 ATACTTATTGTACTTTTTCTTTTGG---AAGATAATTTTGAAATTATATTTATGTACAGAAAACTTAGT-GTATGTTTAGTCCAGTTTAGAGTCGAGCTTTTTAACCTCTGCCTTTTCCAGCTTGGCA-ATGGAAGCCACAGACTTAGGACCCAGGACCTTGCCTCTCCAGTGGCGGCAGATCTCGTCATATCTGTCATTAAAGTTAGTCCCAATAGCTTCCACCAGCTTAGCCAGAGCACCTTTGTCTTTCGAGCTAACTTGGGTGAAGGCAACAGTGGTGCATGTCTTTCTGTGAACCAGGCACCCTAGCCTGGCCTTTCCTTTGATGATGCAGTAGGGCACCCCCATCTTTTGACGCAGGGCAGGCAGGAAAACCACTGGCTCAGTAGGGTCTACATCATGGGCAATCACCACCAGCTGAGCCTTCTTGTTCTTCACCAAGGTGGTGCCAGTATTGACTCCTGCTTGGAGGACAGGTAGTCTCTCAGTTGGGACATCCCCTTTGCCAGCACCTTTCTTCTCAGCACGGGCCAGTAGCCTTTGCCTCTTCTCTTGCTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCT
s HiC_scaffold_1 62307204 536 + 233722169 atccttatttt--tttttctccagattaaggacaattt----gttatttttatgtacaGAAAACTCAGGAGTTCACTTAGCCCAGTTTAGTGGCAAGCTCTTTAGTCTTTGTGTTTTCCAGCGTGGTTTATGTGAGTCACTGATCTAGGACCCAGGACAGTGCCTCTTCAGTGCCGGCAGATCTTAGAGTATCTGTCGTTGTATTTGGTCCTGGTCACCTCCACCAGTTTAGCCAGTGTGTCTTTGTTCTC--AGTTGATTTGTGTGAAGGTAGCAGTGATGCAGGTC-TTCTGTGGACCAGACACCC-AGCCTGGCCTTCTCCTTGATGATGCAGTAAGGGACCCCCATCTTTTGACAC-GGGCAGGCAGGAACACAACCAGCTCGGTGGGGTCCATGTCGTGTGCAGTCACCACTAGCTGAGCCTTCCTACTCTCCA-------GGTCCC-----------------------CAGGT--------------------CTCCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCC-TCGCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCT

a score=10031
s chr3            11008798 363 + 160039680 AAGATAATTTTGAAATTATATTTATGTACAGAAAACTTA-GTGTATGTTTAGTCCAGTTTAGAGTCGAGCTTTTTAACCTCTGCCTTTTCCAGCTTGGCAATGGAAGCCACAGACTTAGGACCCAGGACCTTGCCTCTCCAGTGGCGGCAGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCATATCTGTCATTAAAGTTAGTCCCAATAGCTTCCACCAGCTTAGCCAGAGCACCTTTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGAGCTAACTTGGGTGAAGGCAACAGTGGTGCATGTCTTTCTGTGAACCAGGCACCCTAGCCTGGCCTTTCCTTTGATGATGCAGTAGGGCACCCCCATCTTTTGACGCAGGGCAGGCAGGAAAACCACTGGCT-CAGTAGGG
s HiC_scaffold_1 194457620 761 + 233722169 AGgacaattt----attgtttttatgtacaAAACACCAAAGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTTTTCCAGCTTGGCGATGCGAGCCACAGATTTGGGGCCCAGGACGTTGCCTCCCCAGTGACGACGGATCTGAAATGACAGATAAGCAGCAGTCAGTGTGGTTTGCCATCCACCAAGGCTTTCAGAGCATGAGCGTGGACCCAGAGGCTGCAAGGTTCTAGCAGTGCAGCACCTGTCCCACTCGAGCCCATTTTACCCCTCGGCCCCGAGAGGAAAGCTCCCCTCACCCAGGACAAGGCCTGCAGGGACTCAGCACTCACCTCGTCATATCTGTCATTGTAGTTGGTCCTGATTGCCTCCACCAACTTGGCCAGTGCTCCCTTGTCCTCCCTAACAAGGGGGGAGGGGACAGGCATTTAGCCTCAGGTTATCTCTGAGAGCAGGAATGACACCCTCTGTACTGTGAAACACAAGCCTTTTGCCTCAGATAAAGCATGACCACATGGCTTATTCAGGTGAAGAAATTCTTAACCATCATGGGCAAATGTTCAGATTCACATACCACACACGCTGTTCCCGAGGCCCAGACTAACACTTACGAGTTGACTTGTGTGAAGGCGACAGTGGTGCAGGTTTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTCCCCTTGATGATGCAGTAAGGGACCCCCATCTTGCGACACAGGGCAGGCAGGAACACAACCAGCTGCAAGAGGG

a score=5824
s chr3            11009147 87 + 160039680 CTGGCTCAGTAGGGTCTACATCATGGGCAATCACCACCAGCTGAGCCTTCTTGTTCTTCACCAAGGTGGTGCCAGTATTGACTCCTG
s HiC_scaffold_1 194458841 87 + 233722169 CTACCTCAATGGGGTCCACGTCGTGTGCGATCACCACTAGCTGAGCCTTCTTGTTCTCCACTAGAGTGGTGACAGTATTAACACCTG

a score=10672
s chr3            11009230 273 + 160039680 CCTGCTTGGAGGACAGGTAGTCTCTCAGTTGGGACATCCCCTTTGCCAGCACCTTTCTTCTCAGCACGGGCCAGTAGCCTTTGCCTCTTCTCTTGCTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCT---------------------------------------------------------------------------------------------------------------------------------------------TTTTTGCTGTTTGCCT-------------------------------------------------AACTGGTTAATGGCAGGAAGCACTTTGAGGACCTTATAGAAGATAGCTCTTTGCTGCTGCAGCCTGATGTAGCAGGGACATTTGACGAAGTATGTTAGATCTCTTTT-GGCTGAAATTCTTG
s HiC_scaffold_1 194459095 464 + 233722169 CCTGCTCGGAGGACGGGAGGTCTCTTAGTGGGGACGTCCCCCTTGCCAGCAGCCTTCTTCTCAGCCCGGGCCAGAAGCCTCTGCTTCTTCTCTTGCTTCGTCTCTGGTCTATACTTGTGGGCGAGCTTAAGCAGCTGGGTAGCTAGGAAAGCATCCTTCCATTAGGCCCTGCAGTTTCAGGTCCAGTCTGTCGCTTAGCATGATGTAAATTCGAAGTCCCTAGCAGTACTACAGGTTGAGCAGAAGCCCACAGGGCTACACACAGGGCCATGCACCACCTTTCCAGTTAGGCTGATTCCACACCCCCAAAGCCCACCTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCAGCCGCTTATACAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTG

a score=72059
s chr3            11013473 1736 + 160039680 tttatttatttatttatttattttatttttttttttttttt---attGCACATCACTCCTTTATTATACTGATCTGGAAAGAGACTTAGTTG-------TTACGCCCAAACGAGCT-CTGAACCCACACGGTAGGGTCAAGC-AGCTGGAACATGATTCAGA---------CAGTGAAAGACAAAAACTCGGACATGATCCAGGGGTACTT-CACCTCTAC-AAAACAAGGCCAAGGGATCCAAA----CACAGCAAGAGGTAC------------AAG---GAGTTTATCCC--ACTGATATGAGGTATGGCTTATTTTCTGGTGACCACACA-GGACTGTTTCAAATGTCACTAGCAACCTCAGAGTTGCTTTTGTGTGCTGATAATATGTATATACACTTTTTTTTGTAAAAGTAAATGTAA--CATAGACTTGA--CAAGATTGATCCCAACCTTCTAGGGCCAGCAGCTCCTTTAGGGTCAGAGAGAAAGTAGGGTTAAAAATCACCATG-AGGTTACTTCCACTCTCCACTGGAATGACTA-----TGCCCCCAGTTACCTAACTGCAGGAAGAGTGCAGGACAGGTTCCAGGGACAAAACTGGACT-----GCAGCTTCTCATTGGTCACACCACAGCACAGTTCCTCCCTGAATTCTTCCTAAGCAGACCCTTAGTAAACAAAGACCTAAGAAAAACTATAGTTACTATCTCTCAACTCTCCTGGTACAGGGAGCTGTCCCTCAATGTGGTCCGAGAACCTGCACCCCCAGAGGCGTTATTCTGACTAGATTCTATGAAGGGAGTGGGTGCAGGGGATAAAATACTACAATGAAAACGGGAGCCACAGGCCCCCATCTGCAGCTACAACTTAAACTTAAAATCCTAAAGACATAGTCAGTGTGGCAGGTGCTGGGGAG-GGTGCAGGAGGCAGGAACAGGCAGGGAGGGTGTCGGGGTAGGAGTCTGCCTCTTCGCCTTCACTTCTTCACCTTGCCCTGAGCAGCCACAGCTTCCATGGCTTTGCGCACGGTCTCCTCGTCTCCCAGGAACTGCATGGGCTTGATGGGCTTCAAGTTCTTGTCCAGTTCATAGACGATAGGGATGCCTGTGGGCAGGTTCAGCTCCATGATGGCCTCTTCTGAGAGACCCTCCAGATGCTTAACGATGCCCCGAAGGCTGTTGCCGTGGGCGGCAATCAAGACCCTTTTCCCCTCTTTGATCTGGGGGACAATTTCTTCATTCCAGAAGGGCAGTGCTCTGGCAATAGTGTCCTTCAGGCTCTCACACGAGGGGAGCTGGTCTTCAGTAAGGTCTGCGTACCTGCGATCCTTGCTGATGTTGCTGTAGAAGGGGTGATCAGGCTCCATGGGAGGCGGTGGGACATCATAAGATCGTCTCCAGATCTTTACCTGGGCCTCACCATGCTTAGCAGCAGTTTCTGCTTTGTTGAGACCTGTCAGACCACCATAGTGTCGCTCATTGAGGCGCCAAGTCCTGACCACTGGCAACCACATCTGGTCAATGGCATCCAGGACTGTCCAGAGGGTCCGGATTGCTCTCTTCTGCACAGAGGTGAAGCAGATGTCAAATTCATAGCCAGCATCTCGCAACGCCTGCCCGCCGCGCTTCGCCTCCTCGTGGCCCGCCGGGCTCAGGTCGGCGTCGTACCAGCCGCTGAAGCGGTTCTCCAGGTTCCAGGCGCTCTCGCCATGCCGGATCAGCACCAGCTTGTAGGCAGCCATGGCGACGGGCAGAGGATGCAGCAGCAACTCGTGGATTTATTTTTAA
s HiC_scaffold_1 117791142 1707 + 233722169 tttttattttccttttctgattttattttattattactttttaaattgcaCATCACTTCTTTATTAAGCTGATCTGGAAAAAGACTTAACTGCTTACAGTTATGCTCAAAGTGACTGCTGGCCACAAATGGCAGGACCAAGCCAACTGGAACATGATTCAGAAGTCAGACATAGTGAAACACA----CTTAGACAGGTTCAAGAGGCATTTACACTGCCACCAAAACAAGGCAGAGGGATTCTAAGATATACAGCAGGCTGGACTCCTACCCATAGAGGCCAGAGTCTCTCCTGTACTGGTATGAGGAATGGCGTATTTTCTGGTGACCACGTATGGACCTATTCAACCACCACTAGAAGCCCCAGAAGGGGTTGTGTTTAC-----------ACacacaatttttctttcatagaaaAATTTAATACATAAACTTAATTCAGGATTAATCCCAACTTTCTGGAGTCGGCTGCTTC---AGGGTAAGAGAGGAAACTGTTCTTGTAATCACCATCCAGATAACATTCATCTTCCCCTGGAATGACGAGGACTTGCTGATGGTGACCCAACTATAG-AAGAGTGCAGAGCTGGCTCCTGCAAGCACAGTGTGCTCTCTGGCCTCCCCTCATTGGTCATGTTGTGATATGACTCATATCACAACAGTGCAGAAGCA--------------------CTAGGAAAAAACAGAGTTACTACCTCTCAACTCCCCTGAATAAAG--------------TTTAGCCTGAGAACTTGTGTCCT-AAAGGTACTATTCTGACTAGATTCTATCAAGGGAGTGGATGCAGGATCTAGAATGTTAAAATGAAAACGGGAGCCCCTGGTCTCCATCTGCAGCTACAACAGAGATG------CCTACAGACATGGTTAGTATAACAGGTGCTGGGGAGAGGTACAG-----------AGGAATGGATGATG--GGGGTAGTAGGCTGACTGGTAGTCTTCATTTCTTGGCCTTGCCCTAGGAAGCCTTTGCTTCCACGGCTT-ACACATGGTCTCTTTATCCTCTAGGAACTTCACGGGCTTGATGGACTTTAAGTTCTTATCCAATTCGAAGACAATAAGAATCTCAGCCGGCAGGTTCATCTCCATGATGACTTCTTC--AGAGACCCTCCAGATGCTTGAATGTATCCCAGAGATTGTTGCCATGAACTGCAATCAGGACCCTTTTCCCCTGCTTGATCTGGGGAACAATTTCTCCATTCCAGAAGGGCTGAGCTCTGGCAATAGTGTCTTTCAGACTCTCATAGAAAGGCAGCCGACATTCAGTGAGATCTGCTTACCTACGATCCTTGCCAGTGTT-CTGTAGAAGGGA---------TTCATGGGAGATGCTGGGACATCATAGGAGCGCCTCCAGACCTTCACCTGAACTTCACCTTGCTTGGCAGCA-TTTCCACTTTATCAAGACCAGTCACATCCCCATAGTGCTGCTCGTTGAGACACTAAGTTCTCACCACTGGCAGCCACATCTGGTCAGTGGCATCCGTTACTTTCCAGAGGGTCTGTATTGATCTTTTCTGCACTACAGTGAAGCAAGT-TCAAATTCATAGCCAGCATCTTGCAGCTACTGTTTGCTTTGCTTCTCCTATTTGTGGCCTGCGGGACTCAGGTTGGCATTGTACCAGCCACTGAAGCAGTCCTCCAGGTTCCAGACA--CTTGCAGTACCAGATCACTAGCGGCATATAGGTGGCCATGGTAATAGGATAGGGATGCAGGGTAGActcctttctctggttttga

a score=78527
s chr3           11013500 1684 + 160039680 ttttttttttttttattGCACATCACTCCTTTATTATACTGATCTGGAAAGA---GACTTAGTT-------GTTACGCCCAAA-CGAGCTCTGAACCCACACGGTAGGGTCAAGC-AGCTGGAACATGATTCAGA-------CAGTGAAAGACAAAAACTCGGACATGATCCAGGGGTACTTCACCT--CTACAAAACAAGGCCAAGGGATCCAAA----CACAGCA----------------AGAGGTACAAGGAGTTTATCCC--ACTGATATGAGGTATGGCTTATTTTCTGGTGACCACACA-GGACTGTTTCAAATGTCACTAGCAACCTCAGAGTTGCTTTTGTGTGCTGATAATATGTATATACACTTTTTTTTGTAAAAGTAAATGTAACATAGACTTGACAA-GATTGATCCCAACCTTCTAGGGCCAGCAGCTCCTTTAGGGTCAGAGAGAAAGTAGGGTTAAAAATCACCATG-AGGTTACTTCCACTCTCCACTGGAATGACTA-----TGCCCCCAGTTACCTAACTGCAGGAAGAGTGCAGGACAGGTTCCAGGGACAAAACTGGACT-----GCAGCTTCTCATTGGTCACACCACAGCACAGTTCCTCCCTGAATTCTTCCTAAGCAGACCCTTAGTAAACAAAG-----ACCTAAGAAAAACTATAGTTACTATCTCTCAACTCTCCTGG-TACAGGGAGCTGTCCCTCAATGTGGTCCGAGAACCTGCACCCCCAGAGGCGTTATTCTGACTAGATTCTATGAAGGGAGTGGGTGCAGGGGATAAAATACTACAATGAAAACGGGAGCCACAGGCCCCCATCTGCAGCTACAACTTAAACTTAAAATCCTAAAGACATAGTCAGTGTGGCAGGTGCTGGGGAG-GGTGCAGGAGGCAGGAACAGGCAGGGAGGGTGTCGGGGTAGGAGTCTGCCTCTTCGCCTTCACTTCTTCACCTTGCCCTGAGCAGCCACAGCTTCCATGGCTTTGCGCACGGTCTCCTCGTCTCCCAGGAACTGCATGGGCTTGATGGGCTTCA---AGTTCTTGTCCAGTTCATAGACGATAGGGATGCCTGTGGGCAGGTTCAGCTCCATGATGGCCTCTTCTGAGAGACCCTCCAGATGCTTAACGATGCCCCGAAGGCTGTTGCCGTGGGCGGCAATCAAGACCCTTTTCCCCTCTTTGATCTGGGGGACAATTTCTTCATTCCAGAAGGGCAGTGCTCTGGCAATAGTGTCCTTCAGGCTCTCACACGAGGGGAGCTGGTCTTCAGTAAGGTCTGCGTACCTGCGATCCTTGCTGATGTTGCTGTAGAAGGGGTGATCAGGCTCCATGGGAGGCGGTGGGACATCATAAGATCGTCTCCAGATCTTTACCTGGGCCTCACCATGCTTAGCAGCAGTTTCTGCTTTGTTGAGACCTGTCAGACCACCATAGTGTCGCTCATTGAGGCGCCAAGTCCTGACCACTGGCAACCACATCTGGTCAATGGCATCCAGGACTGTCCAGAGGGTCCGGATTGCTCTCTTCTGCACAGAGGTGAAGCAGATGTCAAATTCATAGCCAGCATCTCGCAACGCCTGCCCGCCGCGCTTCGCCTCCTCGTGGCCCGCCGGGCTCAGGTCGGCGTCGTACCAGCCGCTG-AAGCGGTTCTCCAGGTTCCAGGCGCTCTCGCCATGCCGGATCAGCACCAGCTTGTAGGCAGCCATGGCGACGGGCAGAGGATGCAG
s HiC_scaffold_1 94849030 1701 + 233722169 tcttcttcttctctttggcATATCACTCCTTTATTATACTGATCTGGAAAAAAAAGACTTAATTACTTACAGTTATGCTCAAAATGAGTACT-AGCCCGTGTGGCAGGGCCAAGCCAACTGGAACATGATTCAGAAACGACATAGTGAGAAACA----CTTGGATaggattaaaaatcattttaattgcCGCCAAAACAAGGC--AGAGATCCTAAGATACACAACAGGCTGCATTCCTACCCAGAGAGACCAG-AGTTTATCCTGTACTGGTATGAGGAATGGCTTATTTTCTGGTGACTATATATGGACCTATTCATCTACCACTACAAGCCCCAGAAAGGTTTTTGTTT---------AGAaacctaatttttcttttgtagaaaaaTTTAGCACATAAACTTAATTCTGATTAGTTCCAACCTTTTGGAGCCAGC---TCCTCTAGGGTGAGGGAGGAAAC---TTTTTAAATCACCATGCAGGTTATATT-ATCTTGCACTGGAATGACTAGAGCTTGCTGATGGTGACCTGACTATAG-AAGAGTGCAGAGCTGGCTCCTGGGAGAACAGTGTGCTCTCTGGCCTCTCTTCATTG-TCACGCCTTTGCATGGTTCATCCCTGTCCCCTACTCAAGCAGGTCGTTAGTAAACAAAGCAGAAGCACAAGGAAAAA---AGTTAGTACCTTTCAACTCTCCTGGATAAGAAGAGCCCTCCTTGGGCTTAGACTGAGAACTTGTGTCTT-AGAGGTACTATTCTTACTAGGTTCTATCAAGGAAGTGGGTGCAGGAGCCAAAAGGCTAAAATGAAA-TGGGAGCCACTGGTCCCCATCTGCAGCTGCAACACAGGATG-----CCTACAGATGTGGTCAGTGTGACAGGTGCTGGGGAGAGGTGCAG-----AGGAATGGATGGAG--------GGGATAGTAGGCTGCCTGGTGATCTTGACTTCTTGGCCTTGCCCTGGGCAGCCACAGCTTCCATAACTTTACGCTTGGTTTCTTCATCTCCTAGGAACTGCATGGGCTTGATGGACTTTATCCAACTCTTATCCAACTTGAAGACAATAGGAATGCTAGATGGCAGGTTCAGCTCCATGACAGCTTCTTCAGAAAGATTTTCCAGATGCTTGACTATACCCTGGAGGCTGTTGCAGTGAGCTGCAACCAAGACCCTTTTGCCCTCCGTGATCTGAGGCACAATTTCTTCATTCCACAAGGGCAGAGCTCTGGAAATAGTGACTTTGAGACTCTCGCAGGAAGGCAGCTGATCTTCAATAAGATCTGCATACCTACAATCCTTGCTGATGTTGCTGTAGAAGGGATGGTCAGGTTCCATCGCATGTGGTGGGACATCAT-AGAGTGACTCCAGACCTTCACCTGAATCACACTGTGCTTGGCAGAAGTTTCTGCTTTATTAAGACCAGTCAGATCCCCATAGTACCGCTTGTTGAGACACCAAGTTCTCATCACTGGCACCCACGTCTGGTCAATGACATCCAGTACTGCCCAGAGGGTACAGATTGCTCTTTTCTGTACTAAAGTGAAGCAGATGTCAAACTCATAGCCAGCATCTCATAGTTCCTGCTTACTGTGCTTTGCCTCTTTGTGGCCTGCTGGGCTTAGGAAGGCATTGTATCAACTGCTACAGGGGGTTCTCCAGGTTCTAGGTGCTCTCTCCAAGTGAGATCAGCACCAGCTTATAGGTGGCCATGGTGATGAGTTACGGATGCAG

a score=7531
s chr3            11087301 315 + 160039680 TTTAAAAGAATGGTTAGTTCTTTCTACCTTACCTGAAGATTAGGGGTGGCAGGGAATATGAAAATGCCAGGGGATATCTAGAGCCTTAGATAGAATTTGAGAAAATTGGGAAGTAAATTCGGGACCATTGTTTGATTGGAGAGAGGCTGGGAC--ATCAAACCAGGGAATGATCTCTCA---GAGAAGATCAGAGACTGTCTGAGCCCTTTTGttggttgtggaaaatgcctctacccaccccgagaaggtgtctaccagga-ccaggaggtactgggcagatctaattgtaggcatgtgtgtaaagtcaagttgccagtc
s HiC_scaffold_1 207734184 311 + 233722169 TTTAGAAGTCTGTTT-GCCTTTTCAACTTTTCTCAAGGATTGGGGATGATACGGTATATGTAAATGCCAAGAGATGTTTAAGTTCAAAGATACCTGCTGAGTGATCAGAGAGGTAAAGGCTGGATCATTGTCCGACTG--AATAGTCTGAGACCAACCAAATTGGGGAATAGTGTCTTGTATGAGGATATTAGAATCTGTGG------TTTCTTGGGCAGTGGGAAG-GCCTCTATTTACCTTGAGACGGTGAAAATTGGAAGTTAAAAGATATTTGATGTTTTTGTATCTGAGCATGTGTGGAACGTCAATCTGCCAGTC

a score=38499
s chr3           11658288 1278 + 160039680 CTTTTGGAGGCAGGTGCAGCGAACTTTATTGATAGTATTCAAGAGAGTAGGGAGGGCTTCCTAAGCCCTTCCTATTATTATGGGGGGTCTGTGATGGAAG---------------ATGCTCAG--TGTTGTGGG-CCAAGTTAGGACAGGG-ACTCCGGACAGGGACTCCTCAGCCACTAAGGGCCTCTCTCTTGCTCTCAGTGTCCTTCCTGGAGTCCAAGGTTTCTTACTCCTTGGAGGTCATGTAGGCCATGAGGTCCACCACCCAGTTGCTGTAGCCATATTCATTGTCATACCAGGAAATGAGCTTTACAAAGTTGTCATTGAGAACAATGCCAACCCCGGCATCCCAAAGGTGGAAGATTGGAAGATTGGAAGTTGCTGTTGAAATCTCA--GGAAACAACCTGGTACTCAGTGTAGCTCAGGATGCCCTTCAATGTGCCCTCCGATGCCTGCTTCACCACCTTCTTGATGTCATCAGACTTGGCAGGTTTCTCCAGTCGGCATGTCAGATCCACAACAGATACACTGGGGGTAGGAAAATGGAAGGGCATGCCAATGAGCTTCTGTTTCAGCTCTGTGATGACTTTGCCAACAGCCACGGCAGCACCAGTGGATGCAGGGATGGTGTTGTGGACAGCAACAAGACCATCATGTCCCAACTTTCCAGAGGGGCCACTCACAGTCTTCTGAGTGGCAGTAAAGGCATGGACAGTGGTCATGAGCCTTTCCACGATGCCAAGGTTGTCATGGATGATCTTAGCCAGGGGGGCTAAGCAGTTGGTGGT----GATGCATTGCTGACAATCTTGAGTTAGTTGTTATATTTCTCATGGTTCACACCTATCACAAGCATGGGGGAATCGGCAGAAGGGGCAGAGATGATGATCCTTTTGGCCTGATCCTTTAAGTGGGCCCCGGTCTTCTCCATGGTGGTAAAGATGCCTGTAGACTCCACGACATAGTCAGCACCAGCATCACTCCATTTGATGTTAACCAGATTTTGCTCTTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAACCTTGACTGTGCTATTGAATTTACCATGGGTGGAGTCATACTGGAACACGTAGACCATGCAGCTGAGGTCAATGAAGACATCGTTAATGGCAACAATCTCCACTTTGCCAAGTGCAAAGCAGAAGGCATCCCTGGTAGCCAGGTGCCCAATATGGCCAAATCCCT----TCATATCGACATGCCTACAGGACGAGGA---GGCTGGCACTGCACAGGAAGATGCAGCTATCTCTGGAACAGGGAGGA
s HiC_scaffold_1 97936678 1216 + 233722169 CTTTTGGGTG---GCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA------------TCTTTCCCCTTCTT-CAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAGACACT------------TCCTCAGC---TTAAAGCccctctctt----ttcatttcttgctcAGGCT----GGTGGCCTACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCA--ATAAAGATGGAAGA----AGGAGTG----TCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGC-CAGGTTGTCATTTAGGG-GCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGATCT---GGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGAT-AAATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTC------CTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=25284
s chr3           11658350 1214 + 160039680 AAGCCCTTCCTATTATTATGGGGGGTCTGTGAT-------------------GGAAGATGCTCAG--TGTTGTGGGCCAAGTTAGGACAGGGACTCCGGACA-GGGACTCCTCAGCCACTAAGGGCCTCTCTCTTGCTCTCAGTGTCCTTC--CTGGAGTCCAAGGTTT------CTTACTCCTTGGAGGTCATGTAGGCCATGAGGTCCACCACCCAGTTGCTGTAGCCATATTCATTGTCATACCAGGAAATGAGCTTTACAAAGTTGTCATTGAGAACAATGCCAACCCCGGCATC------------------------------CCAAAGGTGG-----------------------------------------------------------------AAGATTGGAAGATTGGAAGTTGCTGTTGAAATCTCAGGAAACAACCTGGTACTCAGTGTAG--------CTCAGGATGCCCTTCAATGTGCCCTCCGATGCCTGCTTCACCACCTTCTTGATGTCATCAGACTTGGCAGGTTTCTCCAG--------TCGGCATGTCAGATCCACAACAGATACACTGGGGGTAGGAAAATGGAAGGGCA-TGCCAATGAGCTTCTGTTTCAGCTCTGTG---ATGACTTTGCCAACAGCCACGGCA-GCACCAGTGGATGCAGGGATGGTGTTGTGGACAGCAACAAGACCATCATGTCCCAACTTTC-CAGAGGGGCCACTCACAGTCTTCTGAGTGGCAGTAAAGGCATGGACAGTGGTCATGAGCCTTTCCACGATGCCAAGGTTGTCATGGATGATCTTAGCCAGGGGGGCTAAGCAGTTGGTGGTGATGCATTGCTGACAATCTTGAGTTAGTTGTTATATTTCTCATGGTTCACACCTATCACAAGCATGGGGGAATCGGCAGAAGGGGCAGAGATGATGATCCTTTTGGCCTGATCCTTTAAGTGGGCCCCGGTCTTCTCCATGGTGGTAAAGATGCCTGTAGACTCCACGACATAGTCAGCACCAGCATCACTCCATTTGATGTTAACCAGATTTTGCTCTTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAACCTTGACTGTGCTATTGAATTTACCATGGGTGGAGTCATACTGGAACACGTAGACCATGCAGCTGAGGTCAATGAAGACATCGTTAATGGCAACAATCTCCACTTTGCCAAGTGCAAAGCAGAAGGCATCCCTGGTAGCCAGGTGCCCAATATGGCCAAATCCCTTCA-TATCGACA----TGCCTACAGGACGAGGAGGC-TGGCACTGCACAGGAAGATGCAGCTATCTCTGGAACAGGGAG
s HiC_scaffold_1  9527136 1252 + 233722169 AGACCCATCCT----TTGTAAGGAGTCTGTGGTAAAACCTATGCCAAAAAAGGGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAGCAGGGATCCATAGCATGAGAC-------------Agtctttctttcttactct-----tcCTTCTCCTGGAGCTGGTGATCCGGAAGGCCCAATCCTTGGATGTC---------------------------TTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATT--------TCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaaga--gGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTT-AAGGATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCT----CACTCTTGTAGGAATGACATTGCTTACAGTGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAG--------------GTAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGGCTCCAACATTTAT------------ATACTTTAG------------TTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAA-GGAGTGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC------TGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAATTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=36229
s chr3           13668976 1249 + 160039680 tttgtttttttttAATAAAAAATTGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAGCCGCATTTTTTTTAATTTTTGCAATTACAGAATGGTATTCAGTTAACAGAACAACAATTATTGTCGTTATAAGCTGCATCAGAGACAACTGAAGATGAAaaaaataaaacccaaaaataaaaccaaaaggaaaaaacaaaaacaaaaaACCAAACTACTGTCCCCATATATAACTAATTTGTGCTGTACACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCAGACTGTACCAGGCAAGGTTAGTGGCAATTGAAAATACCACCAGGACAGGGCTATCTAAAGACACATTCGGTAGTGTGT------------TAACTATACAA-TAAAAAAAAGACACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACATTTCAATTTTTTCTTTAAAAGGAGTGAGTTGTGTACAGGGGGTTTAAATGCTTTATAGACAAGAAAAAAAAAATAAACTGCACTAGATCCAAC--------------------------------------------------------------------------------------------------------------TTTTCATCATCATCATCATCTTCTTATTCAtcttcctcttcctcctcttcctcatcctcttcatcctcatc--------------------------atca--------------------------------------------------tcttcctcttcctcctTTTTCTTGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCAGTTTTCCTTTAGCTCTGTAGG---CAGCAATATCCTTCTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCCCATAGGGCTGCTTGTCATACACTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAACAGAACAAGAAGAAAGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTT---GGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCACGAGGCACAGAGTTGCCCAGTGCCGGTCTGGCTCGCGCTTGCCCCGGCGCTGTCTCTATG
s HiC_scaffold_1 13381284 1248 + 233722169 TCTCTTTTTGCCTAATAAAAATTGGTATTTACTTAGAAGCACTGAGAATGTCAACAAA-CAGGTGCAGTTTCCTT-----TTGCAATTACAGAGTGGTATTCAGTTAGCA---CAACAGTTATTTT--GTATAAGCTGCAGTGGAGAAGACTGA-------------------------------------------------------------------GTCCCTGTAGATAACTAATGTGTGCTGTGCACCAA---GAACCTGCTCCGAGTTCCCGTGCTGACTTACAGCCCCCACCTGTGCCAGCCA--GTGAGTG-CTACTGAAAACACCACCAG-CCTGGGCTGTCTCCAGAC-CACTTGGGAGTGTATAAATGTacgaaataaataaataagtaaaataacgACA--GTACAGGTTAAAA-------------------------CAATCTTCT---------------------------------------------------------------AGCTG----ACATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTCATCATCATCACCTtcatcttcctcctgctcctcctccgtctcttcatcttccttctctttcttcttttgttattttttattttggtacaagAATCAAGTGAACAGAGAggctacttgccaggcaggcgctgtgctgctgagccgtGTCCACCTCGCTCTCCTGttcctctctgctctctgcctTGACATCTCCCTGTTTTGCCGCACCAGGCTTTCTTTAGCTCGGTAGGAGGCAGCGACGTGCTTCCTGTGTTTTCCCTGCAGCTTGGCA-CCTTCTCCCCA---GGCTGTGTGTCACCTGCTGCAGTGTG--CCCACTTGTCTTCCAGTTTCACAGCGACATCACCCCTGGAGAGGCCAGGATGTTCTCCTTTGAGTTTTGGGTGGCACTCGGAAGAGAATAAG-----GTCTGA--GAGGCCTCTTAGGTGTGTTGGGATCCTTGAGCTTCTTTTGCACTTCTCCTCT-AGGGGAacacacattttcatttctctttcacaGCAAGCCTTGTCCACCTTTGCTATGTCTTCAAATTGTC------CTTCAGCAGACGTGACCTTCCACCTCTCTG-GCACATCTTAAGAAGAAACTCTGAGAAGTCAGTGGAAACATCTGGG---TTCTTCTTGTGCTCCCCTCTGCAAGTTCACACAGAAGAGGCCTATGAGGACA-TTTGCCCCTTGCCCTCTTAGCATCTCCTTTGCCCAAGTCTACTTG-TTTTTTTCTGGGATGCACAGATTCTCCCAGTGCCCATCAGGCTCTCACTTGCCCTGGTGCCGTCTCTGTG

a score=18707
s chr3            13668978 1085 + 160039680 tgtttttttttAATAAAAAATTGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAGCCGCA----------TTTTTTTTAATTTTTGCAATTACAGAATGGTATTCAGTTAACAGAACAACAATTATTGTCGTTATAAGCTGCATCAGAGACAACTGAAGATGAAaaaaataaaacccaaaaataaaaccaaaaggaaaaaacaaaaacaaaaaACCAAACTACTGTCCCCATATATAACTAATTTGTGCTGTACACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCAGACTGTACCAGGCAAGGTTAGTGGCAATTGAAAATACCACC-AGGACAGGGCTATCTAAAGACACATTCGGTAGTGTGTTAACTATACAATAAAAAAAAGACACTGTACAG-------TTTAAAAACAAATCTTA--CACAGCCTTACATTT-------CAATTTTT------TCTTTAAAAGGAGTGAGTTGTGTACAGGGGGTTTAAATGCTTTATAGACAAGAAAAAAAAAATAAACTGCACTAGATCCAACTTTTCATCATCATCATCATCTTCTTATTCAtcttcctcttcctcctcttcctcatcctcttcatcctcatcatcatcttcctcttcctcctTTTTCTTGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCA-GTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTC-GTACTTCTCCTTCAGCTTGGCAGCCTTCTTCCCATAGGGCTGCTTGTCATAC--ACTGCAG------TGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTG------GGGCGGTACTCAGAACAGAACA--AGAAGAAAGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTC-TCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCT
s HiC_scaffold_1 126058651  941 + 233722169 tgtcttaaatttttaaaaagtcacattcaCGTATAAACATTCAGTATATGAACAGAGCAGGTGCAGCAGCGTCATTATGCCTCATTACTTGCAGTCATAGCAGGGT-CACAATTAACATAACAAC-----TTTTTTGTGTAA-CTGAATCAAAGAcaattgaaaatggaaaaaatca-----------------------------------------------------tCTCTTTACAAAGCTAATTTTTGCTATGCACTAATAA-AACCTGCTT-AAGTTTCCATGCCAATTCAAAATGCCATGCAGTTTCAACCAAGGTTATCAGCTATTGAAAATAGCATTAAGGACAGAGTTATCCAAAGACTCGCTTGgta--ttattaattttacaaaaaaataaagacactcTGCAGTATtcacttttaaaacaaatcatatttacatttttacactTACATAAACACATTTcagggtatttttaaaa----ttagtagtg---atggaaattaaatattttg-ggcTAAGAA---------AAACGATACTGGAACCAACttattgt-----tcattattttttcatcatttttctttactctcttatttctgattctttt----------------------ttcctttgttttc-----ctccccagttttaa--aaaatatttcccccTGCATCACACTTTCCTTTGCCCCCAAATACAGCAATAGCCTTTTTAGTATTTCT-CTTTATCTCAAAGCCTTACTTTTCTTAAGGCTATTTATGGTATTATCTGCaggagttatttttttttttatttatctcactTCCCAT--AGCATTACCAATGAATATGCCAGGGTAATCTCCTGTGATTAGGAGTGGTGGACaattttcaaaaccaaacaagagaaaaagactgGAGGAGATCACTTTGG--------------------------------------TAGAGGGAAT--------------------------------------CCTTCATGCTGTCTTCCGCTTTTCCTTTCTGTGTAGTACACATCAATTTCCATCTCATCCAAGCATTTA--AAATAACTATAAGAAGTTGACTGGAGCACCTGAGCACTTTTTCT

a score=41425
s chr3            13669043 1182 + 160039680 TTTTTTTTAATTTTTGCAATTACAGAATGGTATTCAGTTAACAGAACAACAATTATTGTCGTTATAAGCTGCATCAGAGACAACTGAAGATGAAaaaaataaaacccaaaaataaaaccaaaaggaaaaaacaaaaacaaaaaACCAAACTACTGTCCCCATATATAACTAATTTGTGCTGTACACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCAGACTGTACCAGGCAAGGTTAGTGGCAATTGAAAATACCACCAGGACAGGGCTATCTAAAGACACATTCGGTAGTGTGTTAACTATACAATAAAAAAAAGACACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACATTTCAAT-TTTTTCTTTAAAAGGAGTGAGTTGTGTACAGGGGGTTTAAATGCTTTATAGACAAGAAAAAAAAAATAAACTGCACTAGATCCAACTTTTCATCATCATCATCATCTTCTTATTCAtcttcctcttcctcctcttcctcatcctcttcatcctcatcatcatcttcctcttcctcctTTTTCTTGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCAGTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCCCATAGGGCTGCTTGTCATACACTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAACAGAACAAGAAGAAAGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTC-TTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCACGAGGCACAGAGTTGCCCAGTGCCGGTCTGGCTCGCGCTTGCCCCGGCGCTGTCTCTATG
s HiC_scaffold_1 121717694  931 + 233722169 tttttttttttttttgcaattacaGAGCAATATTCAGTTAACA---CAACAATTATTTT--GTATAAGCTGCATCACAGACAGTTGAAGGGGAAAAG----------------------------------------------------CTACTGTCCCTGTACAAAA----TTTGTGCTGTGCATC----------------------------------------CCATTCTGTAGCTGGCAAAGTTAGTGGCTACTGAAAATAC-ACCAGGACAGGGCTATCTACAGACATATGCAGTCGTAT------------ATAAAAGAAAGACATTGCACAGCTTAAAA-CACATCTTACAGAGCTTtacttttcactgtttttctttaaaatgaatgagTTGTGTACAGGGAGTTTAA-TATTATATAGACAAAAAAAA----------TGCACTGGAACCAAGTGAT--TCATCATAGTcattttctgtttcatctttgTCCTTATCctcttc------------------------atcttccttttttttctttttc------------gtcttgacagcttcctttctctc--catcAGGTTTTCCTTTATTCGGGAGACAATGATGTCTTTCCCACACTATTCCTT-AGTGCGGCAGCCTTCCCCTCATAAGGCTGCTTGTCATCTGATGCAGTGTCCTTGCACATTTCTCCCAGTTTCTTTGTGAAGTCACCAATGGCAAGGCCAGGAT--TCTCCTCTGAGCTTTGGAGGATACTCAGAACAGAACAAGAAGGCGGCCAGAGGGGCCC---CAGGCTCACTGGGATCCTTGAAC-----TTTGGT-TTTTCTTTAGGAGGAatgtaagttttcatttctcttttcataaTGG--CTTCTCCATCTTTGCCGTGTCttcaaattttcctttctctttagcaGACATGATCTTCCATTTTTATGAGCGCTTCTTAGAAAAGCCTGAGAAGTTAATGGAAGCATCTGAG------------------------------TGTACAAAGAATGCGTATGATGACA-TTTGCCCCCCAGCTTCTTAGGCCCTCCTTTGCC------------------------------------------ATGCCCATCTGGCTCTCACTTGCCCCCGCACTGTCTCTGTG

a score=20231
s chr3            13669565 581 + 160039680 tcatcctcatcatcatcttc-----ctcttcctcctTTTTCTTGCTC---TTTTCAGCCT---TGACCACC----CCCTTTTTCGCTGCATCAGTTTT-CCTTTAGCTCTGTAGGCAGCAATATCCTTCTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCCCATAGGGCTGCTTGTCATAC---ACTGC---AGTGTTGTTCCACATCTCTCCTAGTTTCTTTG-CAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAACAGAACAAGAAGAAAGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCC---TTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATG
s HiC_scaffold_1 116832061 599 + 233722169 TCGTTCTTATCAtcatcttcttcctctcctcctcaaTCTTCTGGTTCATATTTTGAGCCTATTGGGCTATCAGGACTCTTCTTTCCTCCTAGACTTTTGCCGTTGGCATGATATGCAGCTATATCCTTTTCATATATCTCTTTTAGCTTAGCTGCTTGTTGTTCATATAGTTGTTTACCTTGGCTGACTGCTCAGACCATATTTCATCTCCCACCTTTCTTTTTCATCAGTATCTCCAATGGACAGGCCTG--TGTTCACTTTTGATCTTTGGGCAATAttcagagcaaaacagaaaaaagaaagatggtgGTCTTTTAGGAGCatttagg-----aaatttttttctctcatcacCATTTTTGGGAGGACCATAATTTTTCACCACCTTGTCATAGCAAGCTTTATCACTTTTTGCCGTATCTTCAAACTTCAACTTTTCCTTGGCAGACATGGTCTCCCATCCCTCCAAGCACTTCTTGGAAAACTTCACAAAGTTGACCAAGGAGTCAGGGTGCTTCTTCTTGTGCTCCTCATAGCAGGTCTACACAAGGCATACA-AGGCATACACTTTGTCCCATGGTTTGTTGGGGCCTATCCTGACCATG

a score=31359
s chr3            13838121 860 + 160039680 TCAGCAGTGGAGTCCTGGGTAATGTCCTTTCCTTAGGATTGCAGGTAGCACAAACATT-CTTTTGATAAAGAGA---ATTGTCACATGATTATAG-AAGACAGTTGAAGATA---CAGTCTCATGCTCT-CTGCACTGATATCAGAACAATGTCATCGGAACAAAGTAGATCATCCAAGAAG------CACTTACAGCTCAGTCTTACCTTGTGCCAACAATTTGCCAATTCTATGTTTTGTTGAAGGTTTTTACAGTTTTGATCACATA-----CTGTATTCTTGGTCATGGGCAATTCT---ATATTATAATCAGATCATCTGTATAAAATGTAAATGGTATTAAAGTCAGGATCCGAGG-GAACAATGCATCCGTTCACCATACATT----CTATTTATTTTGAGAAACACTTAAATACACAATGAGATTGTGTACTG--TAAGACATCATGTGAGCAATGTTGCTGGCCTGTGCG--GCAGAATCCAGTGTACTTTAGGAAACTGAAGACACTCAAAAGTTGATACCCAGTTTCGATTAATGCT---CTAAAAATGAGCATTTCAATTTGATATAACTATATAAATTTAAAATGTATGCAGTTCAGAATG----ACCAGTTTTAGATTGTTTATGTACCACAAAAAAATATAGTCAATAAAAATGTACCAGAGAGGTGGGAACAAAA-GCTCTCTGGATCTGTACAGCAAAAATGAACACCACTCCAATTTGTTGTTGCAAGTTGTGG-TGAAGTGGAATCCTATG-CCCAAGGAACACTGGGAAGGTAGAA------------GGTGATGAAGGATAAGATGCAAAATAAGGCCCATTTTCCCTGGCATCACATTCAAGGACAAAATGAGGA----AAGTC----TATCTGCT---CTGGTGATATGGCAGAGAAGAGCT
s HiC_scaffold_1 123552702 891 + 233722169 TCAGTGATGGAGTCTTCAGTAA----CTCTCTTCA----------CAGCACGTGCAGTACTTTTGAATAAGAGACCAAGTCACCCGTGGTTATAGGAAAAGGGCTGAAAACAAATCATTCTGTTTCTCCACATCACTGAGATCAGAACAGTGTGATTGCAGTGAGCTGTATAATCCAAGGAAATTTAATACTTTAATCATAGTCTTAACTTGTATAGTAAAACTGCAAACTCTGTATTTTGCTaatgatttttatgtttctgaTAGGGTAGATTTCCATATTCTTGGTCCAGGACACTTCTCTTATATTATAACCAGATTACCTATATCAGATGTAAATGGTACTGACATCCGGATCTGAAGTAAACAATGCATCTGGTCGGCATCCATTGGGTCTATATATTTCAagaaacacttaaatatacaaaGGAAGCGTGCAATGCTTAAGAAAT-----GAACAGTGTTGTTGGCTTGTATAATGGAGAAGCCAGTGTCCTTCAGGAAACTGAAGATACTCAAAAGTTGCCCCCCAATTTCTATTAACAACATACTACAAATGAACATTCCT-TTTGatacaaatatacaaatttaaaatgt--gcAGTTCAGAATGGCCTACCAGTTTTAGGTTGTTTATGTGCCA-GAAAATATATAGTCAATAAAAAAATACCAGAGAGGTGGGGACAAAAAGCTCTCTGGATCTGTACAGCAAAAATGAACATCACTTCAAT---AGGCAGCGATTCATGGCTGAAGTGGTACCCTTGGAACCAAGAAGCGCTGGGAAGATGGTAGATCACAAAACTGGCGATGGAGGATAAGATGCATAGTAAGGCCCATTTtcctaagga--------aagaaaaagataagaataCTAAGTAACAGTATCAGTTTAACTGAGAATGTAAAAGAAAGGAGCT

a score=10865
s chr3            13838907 152 + 160039680 ATTTTCCCTGGCATCACATTCAAGGACAAAATGAGGAAAGTCTATCTGCTCTGGTGATATGGCAGAGAAGAGCTGTTGCAGGCTCCCTACGTGGTGGATCTTGTCCTTCAATCCTGAGACAGAAAAGGTAGGGATAAACCATGTTGAGACCT
s HiC_scaffold_1 123557463 152 + 233722169 ACTTACCCTGGCATCATATTCAAGGACAAAAGGAGGAAAGTCAATCTGTTCTGGTGATATGGCAGAAAACAGCTGGTGTAGACTGTCCACATGGTGAATTTTGTCCTTCAGTCCTGAGACAGAAAAGGTGGTGAAAAACCATGTTGATACCT

a score=4248
s chr3            13839013 104 + 160039680 TTCAATCCTGAGACAGAAAAGGTAGGGATAAACCATGTTGAGACCTTTGAGTGGAATGTTGGATGAATGAAATAAAGAGCCTTCAAATTCCTCTTGCATTTGAT
s HiC_scaffold_1 123561125  94 + 233722169 TTTAATAAttagttagaaaag------aaaaatactgt----accTTTGAACGAAATGTTGGGTGAACAAAATAAACAGCTTTCAAATTCCTCTTGTACCTAAT

a score=9539
s chr3            13839119 132 + 160039680 CGACATCATAGAGTTTCTTCAGGAAGTTGCAGTCCAGGTGATTGTCTTCGCCGCTAAGTGTGTCAAAATACACCAAGGCATATTCCTTCACAGTGATGTGATCCATTACACGGATAAAATACAAGAGTGCCT
s HiC_scaffold_1 123562792 132 + 233722169 CAACATCATAGAGTTTCTTCAGGAAGTCAGAGTTCAGATGATTGTATTCGCTGGTCAGCGTGTGAAAATATACCAGCACATATTCCTTCACAGCGATGTGATCCATTACATGGATAAAATATAAGAGTGcct

a score=5965
s chr3            13839246 84 + 160039680 TGCCTTGTCCATATCTATCAATGTCACAGGAATGTTTCTTCCAATGACCACCATCACTGTGTGGCCACAGTTATCTACACCTGC
s HiC_scaffold_1 123564408 84 + 233722169 TACCTTGTCCATATCTATCAGTGTGACAGGAATGTTTCTTCCAACTACTACCATGACAGTGCGACCACAATTATCCACACCtac

a score=5811
s chr3            13839323 80 + 160039680 CACCTGCTTGGTATAAAGCTTTCAGAGAAGCAATATCAGACAGGTCTTCAGATCTTGATTGGTAGAATCAGTGATTATAA
s HiC_scaffold_1 123565352 80 + 233722169 CACCCGTTTGGTATAAAGCTTTCAGAGATGCAATATCAGACAGATCTTCAGATCTTGCTTGACATAACCACCGATTATAA

a score=9944
s chr3            13839404 157 + 160039680 TTCTTTGATGCTGTGTCTGCAGGACATCTTTGGACAACTGTCCCTGGATAATCAATTTTCTTTGCTTGCCAATACCTCCTTCCATTCGAGCAAAAGCATGAGAGCCAAAGTAAGACAGATCCATTCCCAAGCCTTCATCCTCATCTTCTTCACTGCC
s HiC_scaffold_1 123574995 157 + 233722169 TTCTTTGATGCTGCTTCTGTAGGGCTGCCTCAGATAACTGTCCTTGAAGGATTAGTTTTCTTTGCTTATCAATATCTCCTTCCATTCGAGCAAAAGCATGAGAACCAATGAAAGATAGATCAACTCCTAGGccttcatcttcctcttcttgGCTATC

a score=10708
s chr3            13839559 161 + 160039680 CCCTCTGAAGCACCAGGTTTCTTGCTTACCC--ATTTGCTGCTCAGGCACCACGGGCTCCCCCTCTGCATTTCCAAAGTCTGCAGGTAGGTACAACAATGACCAGCTCTCCTCCTTTAACGACCTTGGGAAGTACAGAGTTAGCAGCTTTTGGTAAGTGGCCT
s HiC_scaffold_1 123577143 163 + 233722169 CCCTCTGGAGCACCAGGTTTTTCACTTATTCTAATTTGCCGTTCGGGTACCACAGGCTCCCCTTCAGCATTCCCAATATCTGCAGGTAGATACGGCAGCGAGCGACTCTCCTCCTTTAACGTTCTCGGGAAGTACAGAGGCAGCAGCTTTTGGTAAGTAGCCT

a score=6950
s chr3            13839793 94 + 160039680 TATGAAGAGCGATGTGTGTTGCATCCTCTAGCGGATAACCTTGCTTTGCAGAATTGATGACACAGAAGCCAACAGAAGACACGGACTGTTCTTT
s HiC_scaffold_1 123584427 94 + 233722169 TACGAAGTGCTATGTGTGTTGCATCCTCTAGGGGATAACCTCGTTTTGCAGAATTGATAACACAAAACCCAACAGAAGACATTGACTGTTCTCT

a score=12311
s chr3            13839885 156 + 160039680 TTTGCCAGCTGAAGCACATTTCTGTAACAGCTGTACAGGGAACTCTCCGCTGCAGTGCGATAGCGGCTCTTGTACTTAGGTCCCACCATGTGAATGATGAACGGAGCAGCTAGGTTAAAGCCTTTTGTCAATTTTGCTTCACCAGTTCAGCAACCT
s HiC_scaffold_1 123584923 156 + 233722169 TTTGCTAGCTGAAGTACATTTCTGTAGCAGCTGTACAGGGAACTCTCAGCTGCTGTGCGGTAGCGGCTCTTATACTTTGGCCCCACTGTGTGAATGATGAACCGAGCAGCTAGATTAAATCCTTTTGTCAATTTTGCTTCACCTGTTCGGCAACCT

a score=9832
s chr3            13840037 146 + 160039680 ACCTTTAAATTTCTGTAGTTCTTCTTTCAGATACGACCCC-CAAGCATGAAGGTGCTCTCTGACACAGGATTCTTATCTGTGAAGTTTTCATTGCTAGTATTCACAATGGCTGTACAGTTCAGTGATGCCACGTCTTCTTTCCAAAG
s HiC_scaffold_1 123586841 147 + 233722169 ACCTTTCAGCTTCTGTAGGTCCTCCTTCAAATCCGGTCCTGCAAGCATGAAGATACTTTCTGACACAGGGTTCTTATCTGTGAGGCTTTCATTGCTGGTATTCACAATGGCTGTACAGTTCAATAATGCCACATCACCTTTCCTGAG

a score=12890
s chr3            13840174 233 + 160039680 TTTCCAAAGAACCACTTTTACATCAATGTCCCAATGATAAAGAAAAGGTGATCT----------TCCTGGAATGCCTCAGATGTCGCGTCAGAGGAGTTTGCTTCATCTTCA--TGAGTCACCCCAATTTAACAGGGTTGTCCACATCCATAAACTGGGAAGGTGCACCCAAGGGATCCATGGAATGCGAACTTAAGCTT---GTGGCCCCAACATTTCGGCAATTCAACAATCGCTGGGGATTTTAG
s HiC_scaffold_1 123587858 247 + 233722169 TTACCAAAGAACCACTTTTCCATTGATAACCTTATTATAAAGAAAAGGTGATCTAATATTATCTTCCTGAAATGTTTCAGCTGTAGTATCAGAAGAATTTAATTCATCTTCACATGAGTCACCCCAGTTTAGTAGAGT-ATCCACATCCACAAACTGGGAAGGTGCACCCAAGGGATCCATGGAATGAGAGTTTCAGCTTCTCTTTTTCCCAGTTTCTCAGCAATTCAATAATCCCTTGAGAGTTtag

a score=4568
s chr3           14053363 161 + 160039680 AATATCTCAGAAATTGGCCAGGTCCTTACTATTATATACCCAGAAAT--ACAAAGGATAAGGTCTTCTAAATGACTTTGTTTTGAGAAGAGAGATCCAGGATTCTTTGTTCATACAGGGCCTTCTAGGAGTGTTTGTATCCATGTTCAATCACCCAGACATTC
s HiC_scaffold_1 82900070 162 + 233722169 AGCATCTTAGGAACTGAATAAAACCCATTCATTGCAGTTTCAAGTatgtaaaaaaggtaaaatttttgaaa-gaatttaacTTGAGAAGAGACCTCCAGGGTTTCCTGCTCATTCAGGACTGTCTAGGGAAATATATCTCCAGGTTCAGCCAAATGGACATTC

a score=4009
s chr3           14053364 160 + 160039680 ATATCTCAGAAATTGGCCAGGTCCTTACTATTATATACCCAGAAATACAAAGGATAAGGTCTTCTAAATGACTTTGTTTTGAGAAGAGAGATCCAGGATTCTTTGTTCATACAGGGCCTTCTAGGAGTGTTTGTATCCATGTTCAATCACCCAGACATTC
s HiC_scaffold_1 37491727 160 + 233722169 ATGTCTCAGTAAATGACCATATCCCATCCTTCACATGTGTGAGGGTTGAAAGGTTAAACTCCTTTGAGAAATTTTGCTTTGCAATAAGAGCCCTGGGTTATGCTGCTTATTCAAGACTGTCTGGGAAAATGGTTCCCCAAGTTCAGTCATTCAGATACTC

a score=4209
s chr3           14053367 142 + 160039680 TCTCAGAAATTGGCCAGGTCCTTACTATTATATACCCAGAAATACAAAGG-ATAAGGTCTTCTAAATGACTTTGTTTTGAGAAGAGAGATCCAGGATTCTTTGTTCATACAGGGCCTTCTAGGAGTGTTTGTATCCATGTTCA
s HiC_scaffold_1  8332416 143 + 233722169 TCTCAGGGGTTGGTCATATACCACCCAGAGAAGGCTTATAGGTATAAAAGTGTAAACTTCTTTGAAAAACTTTGATTTGAGAAAAGCGCTCTGGGATGCTCTGGTTATTCAGGACCACCTAGGAAGATGTGTCACCAAGTTCA

a score=15706
s chr3            14342087 1556 + 160039680 caacagttcctcta--ttccttcttctagccagccaacctactaa------cactgccatgc------tatttcctctaccagcttctcaggtagatccctgagtctggg--acctccagaacccctATGATGCTAAGCACCTAATGTCATCCAGTTACTG------------GACTCTACCATGTAC----ATAACCCAAGCTCAATACCCTCTCTCTCACTCCAGAGCCTCAG--GGGACTTAAGCCTATCATTTCTGAGCTCTTGAGAAAAAACTCCTTCACCCTACCTCTTCCCCCTTTAACATCC-----ATAGCTGTTAAGAAACCTAATGGTACCTATCACAtggttcaagacctcaggctcattaatt-ctgcagtggttcctcttcatcctgttgtggcgaacccttacac----acttctttccactatcccctcttggcttcccaattctctgtcctagatcttaaggatgcatttttctctatctttctagatgcccagtcacagaatatatttgcctttacctggacagatcctgatacccacttttctacccaacttatctagacttttatacctcagggattccagaatagcacacacctatttggtcaggccctggcttctgacttactatctctgtctctccctatatctaagatcatacct----tatgtagatgatgtccttctctgtagaccctctctaaaaattagccaagctaacactt--ctgctcttctaaatttcctctccagtcaaggctacaaggtctcaccttctaaagtccaactGTCTACCCCCTCAGGTCACCTACTTGGGACTAAATTAC---CCCAACCCACAAGG-CTATTACCTTAGATAGAAAGA--ATCTGATTAAGTCTCTAACTGTTCCTTCTACAAAGGAAGAGAATGTATCATTCCTAGGAATAGCTAGTTTTTTACGTGTATGGGTTCCTTCCTTTTCCCTCCTTTCTCATTCCTTATATGAAGCAGCTTTAGGCTCCACCCAGGAAGCTCTTCTCAAACCTATTA----CCAAAC------CCTTTCAAAGGCTCCAACAGGCTCTCCTTAAGGCCCCAGCTTTATATCTCCCTGACCTGACTCATCCTTTTTCCCTCTACATAACTGAAAAAGAGGGATTTGCCCTTGGAGTTTTAGGTCATCAACTGGGACCTTCTTTTGCACCCATAGCATATTTGTCAAAAAAAAAAAAAAACCTACATCTAATCATCTCAGGGATGGGCACCTTGTATCTGTACCTTAGCATCTTCTAAAACTCCTTATTTGAAAGTCAAAAAAAACCTAACCTTTGGGTC-TTCTCTTCTCATA-ACTTGTCACAGCTCCTAATGTA--TAAAGGCTTACATATTCTTCCTCC-----CTCCAGGGTTCTTTCTCTTCAAGGGGCT--CTAATAGAAGACCCCACATTAACCTTCCAATCATGCTCACCTCTTAATATTTCCAGTCTTCTCTCTCGACCAAAGACTGACTACTCCCTATCTCACTCCTGCACTGAAACTTTAGAGGAACTATTACATC-ATCCTTCACACATACAGGAAGGCACATTGCTCAAGCCATCCATACCTGGTATACAGATGGCAGCTC
s HiC_scaffold_1 205093979 1550 + 233722169 CAACTTTTCCTACACTTTCCCTCTCCTCGC-AGCTCTCATACTCCAGATCCCATCGCCACGCACCAACTACACCCTTTTCCCACCTCCCTGGCTGATCCCACAGTCTGGGGTACTTCCA--ATCCCACACATGCTA-----CTCATGCTACCCCAGTGCTGATTTGTCTCAAAGACTCCTCCGTTTGTTCTTCTGTCCCA----CAATACCCTCTA----GCTCCAAAACATCAACAAGGTCTCAAGCCCATAATACATCATCTGCTGACGAATGGGTTTCTCAGGATTACACT-CCCCTTACAACACTCTTTTTCTCCCTGTTCTCAAAGCCAACAGATCCTATCACTTAGCCCAACACCTTAAAGCCATAAACAACTGCAGTAATGCTCACTCACCCAGTGGGGTCAAACCCACATACTATGCTTTCTTTATATTGCCTCCTCc--actactcactttacagtcct------cAAAGATGCTTTTTTAACCATCCCCCAACACCCTGATAGTTAGGATCTCTTTGCATTCACATGGACTGGCCCTGACACTCTTAGGTCTCTGCAAATTACTTGGACAGAGCTCCCCCAGGGGTTCAAGGATAGTCCTCATTTCTTTAGCCAAGATCTTGTGGCTGACCTTACAGCTCT----CAACCTCAAACTCAGCACCCTCCTCCAAtatgttgatga---ccttctgtgCTGCTCCTGTC-ATATGCTAGCCATA-TGACATTCAGCTATCCTCCTCAATTGTTTCTCTGACTGTGGGTACAGAGTCTCTCTTAATAAAATGCAGATAGCT-CCCCCAAAGGTCACATATATAGGATTCACTCTCACACCCA--CCACATGGTCCATTACCACAGATCACAAGGTGGTCCTCTGGGGTCTCCA---GGTACCCACATCAAACAACAGGTCCTATCCTTTCTGGGTTGAGCTAACTTTTTCTGCCTCTGGATTCCGAACTTTGTAGCTCTAGCTCAACCTTTCTACAAAGCTTCCAAGAACTCATTATCAGAATCCCT----AGACCCAACAACACCCATACACTCCTCCTTCCATAAACTAAAGGAGGCTGTCCGAAGGGTTCCAGCCCTTACTCTCCCTAATCCAACCCTGCCTTTTGTCCTGTACATGACCTGTCAAGACCACAATGCTGTGGAGGTCCTGTGATATCAAAAGGGACCTTCCTTTCATGCCTTGGCATATCTGTCCAAACGACTAGACAAC---------ATCATAT-ATGGCTGGCCTTCCTACCTCTGGACACTGGTCTTGCCAGCCATGCTGACACCAGAAGCCAAAAAAATCACAG----TAGGTCAATCCATCACCATCTATTCCCTACAGAGACTAACTGACTTAATTTCATACAAAACCATGCTCTGATGACTCC------CTCTCACTTACAGAAGTTCACTCATACAAGACCAC-TATCACCCTCTCCAACA-GTAGCTCCCTCAACTCAGCtaccctttcttct-----------------cttcccacCTCATAACTGCACTGAGGTTTTACAATGACTCCTATTCCTTTCCCTCATACTCATAGTTCCCCTC-TTCCTGCAGcttttgacacatggttcatagatggtaGCTC

a score=7656
s chr3            14342774 869 + 160039680 acacttctgctcttctaaatttcctctccagtcaaggctacaaggtctcaccttctaaagtccaactGTCTACCCCCTCAGGTCACCTACTTGGGACTAAA--TTACCCCAACCCACAAGGCTATTACCTTAGATAGAAAGAATCTGATTAAGTCTCTAACTGTTCCTTCTACAAAGGAAGAGAATGTATCATTCCTAGGAATAGCTAGTTTTTTACGTGTATGGGTTCCTTCCTTTTCCCTCCTTTCTCATTCCTTATATGAAGCAGCTTTAGGCTCCACCCAGGAAGCTCTTCTCAAACCTATTACC-----AAACCC----TTTCAAAGGCTCCAACAGGCTCTCCTTAAGGCCCCAGCTTTATATCTCCCTGACCTGACTCATCCTTTTTCCCTCTACATAACTGAAAAAGAGGGATTTGCCCTTGGAGTTTTAGGTCATCAACTGGGACCTTCTTTTGCACCCATAGCATATTTGTCAAAAAAAAAAAAAAACC---TACATCTAATCATCTCAGGGATGGGCACCTTGTATCTGTACCTTAGCATCTTCTAAAACTCCTTATTTGAAAGTCAAAAAAAACCTAACCTTTGGGTCTTCTCTTCTCA--TAACTTGTCACAGCTCCT-----AATGTATAAAGGCTTACAT---ATTCTTCCTCCCTCCAGGGTTCTTTC---TCTTCAAGGGGCTCTAATAGAAGACCCCACATTAACCTTCCAATCATGCTCACCTCTTAATATTTCCAGTCTTCTCTCTCGACCAAAGACTGACTACTCCCTATCTCACTCCTGCACTGAAACTTTA-GAGGAACTATTACATC-ATCCTTCACACATACAGGAAGGCACATTGCTCAAGCCATCCATACCTGGTATACAGATGGCAGCTC
s HiC_scaffold_1 167230581 818 + 233722169 ACACAGCTACCCTTCTCAACTTTCTCTCAGGTTGCAGATACACAGTGTTCCCCACCAAAGCTCAAGTA-ATCTCACCTAAGATCAAATATCTAGGGTTGACCCTCACCCCTACTACTCACTCCATAACCTCTGATTACAAAGCTCTGCTCCATGACCTCCAGGTACCAGCTAACAAGCAACAAATTCTATCCTTCGTGGgcttaaaaaatttctttctcctctggACCCTTAACTTTGCCACACTAGCCCAACATCTTTACAAGGCCTCCCAAGGCTCCCTATCAGAGCCTCTT---AACCCCAGTACTCCTATACACTCCTCATTTTCTAGACTGAAAGGGGCCCTTTTAAGAGCCCCACCCTCAC-TCTCCCTAACCCAACTCAACCCTTCATGCTGTACACAATCTCTCAAGACCACAATGCCATGGGAATTTTAGGATACCAAAAGGTACCTTCTTTCCAAGCAGTAGCCTACCTCTCAAAACAATTAGACAGCATGGTACAT-------------GGCTGGCCTCCCTGCCTTCGTGCCCTCAC-----CTCAGTAGCCACATTAACAAGCCAAAAAAGTC----ACTTTAGGTCAATCCATCACAATCTACTCACCGTATCACCTCaatgaatttat-----tttacataaaacacTCCCTTCCTTAATAACTCATTTGCACCTACAAGGTCATTTAATA---------ATATAAGACTT---------------------TGTTTCCCACCT-----------------CTGATGAGACCCTTCACCACAATTGCATCAAGATTTTGCAAGTGACCCCTACCCAGGTCCCTCACAT-TAAAAGCACTCCTGTCTCTATAGCCTCCAATACATGGTTCACAAATGGTAGCTC

a score=23640
s chr3           14428286 845 + 160039680 GGTGCAGCAACCTTTATTGATGGTATTCAAGAGAGTATGGACGGCTCACTGGGCCCCTCCTGTTATTATGGGGTTCTGGGATTGAAATTGTGAGGAAGATG------CACAGCGTTGCGGGGGAGGGCAAGTGAGACTAGG---GATGCCTCAGCAACTGAGGGCCACTCTCTTACTCTTAGTGTCCTTGTTGGGGTGGGTGGCCCAGGTTTTCTTACTCCTTAAAGGCCATGTAGGCCAAGAGGTCCACCACCCTTTGGATGTAGCCATATTCATTGTCATACCAAGAAATGATCTTCACAAAGTTTACTTTGAGAACTGTGCCAGCCCCAACATCAAAGATGGAAGAGCGGGACTTGCTGTTGAAGTCAC--AGGAGACAACCTAGTCCTCAGTGTAGCCCAGTATGCACTTCAGTGGACCATCAGATCCTGCTTCACTACCTTCTTGATGTCTTAAAATT-GGCAGGTTTCTCCAGGTTGCATGTCAGATCCACAACAGATACACTGGGGATAGGAACACAGAAGGCCATGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGTCCAAACACTTGGCAGCACCAGTGGATACAGAGATGATATTCTGGGCAGCACCATGGTCATCACACCACAGCTTTCCAGAGGGGACATCCACAGTCTGCTGAGTGGTAGTAAAGTCATGGACCGTGGTCATGAACCCTTCTGAGATGTCAAAGTTCTCATGGGTGACCTTGGGGGGAGGGATGATAAGCAGTTGGTGATACAGGATTCATTTCTGACAATCTTGAATGAGTTGTCATATTTCTTGTGGTTCACACCCATTACAAACATGGGAGCATCGGCAAAAGGG
s HiC_scaffold_1 97936687 801 + 233722169 GGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCAT------------CTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGC--------TGAGTTTGGGCAAGACACTTCCTCAGCTTAAAGCccctctcttttcatt-----tcttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCCAGGT-TGTCATTTAGGGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGC--------ATAGGATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATC--CAGTCTTCTGTATAAGAAGGATGACCTG----GTGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGT--TAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAG-GTATCACCAGAAGGG

a score=12714
s chr3           14428614 518 + 160039680 AAAGATGGAAGAGCGGGACTTGCTGTTGAAGTCACAGGAGACAACCTAGTCCTCAGTGTAG--------CCCAGTATGCACTTCAGTGGACCATCAGATCCTGCTTCACTACCTTCTTGATGTC-TTAAAATTGGCAGGTTTCTCCAGG--------TTGCATGTCAGATCCACAACAGATACACTGGGGATAGGAACACAGAAGGCCA-TGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGTCCAAACACTTGGCAGCAC----CAGTGGATACAGAGATGATATTCTGGGCAGCACCATGGTCATCACACCACAGCTTTC-CAGAGGGGACATCCACAGTCTGCTGAGTGGTAGTAAAGTCATGGACCGTGGTCATGAACCCTTCTGAGATGTCAAAGTTCTCATGGGTGACCTTGGGGGGAGGGATGATAAGCAGTTGGTGATACAGGATTCATTTCTGACAATCTTGAATGAGTTGTCATATTTCTTGTGGTTCACACCCATTACAAACATGGGAGCATCGGCAAAAGGGG
s HiC_scaffold_1  9527482 511 + 233722169 aaaga-gGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAGGATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACA---GTGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTT---AGCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGG

a score=8705
s chr3           14434637 354 + 160039680 aGGGGCAGAGATGATGACCCTTTTTATTCCACCCTTCAAGTGGGCCCCAGCCTTCTCCATGGTGATAAAGAGGCCAGGAGACTCCATGACATACTCAACACCAGCATCACCCCATTTGATGTTAGTGGGATCTTCCTCCTGGAAGATGGTGATGAGCTTCCCATTGATGACAAGTTTCCCATTCTGGGCCTTGACTGTGCCATTGAACTTGCCTTGGGTGGAGTCATACTGGAACATGTAGACCAT-GTAGTTGAGGTCAATGAAGGAGTCGTTGATGGCAACAATCTCCACGTTGCCATGTGGAGAGCAAACAGCAGCCCTGGTAACCAGGCCCCCAATATGACCAAATCAGTT
s HiC_scaffold_1  3815515 330 + 233722169 AGTGGTAGGGATGATAATACTTTG-GCTTCACCTCCGAAGCGGGTGCTGCCTATGGCTAAGATGATGAGGAGCACAGCGGATTGCAGCATGTGTTCAACATC-GCATCACT--ATCTGATGCTGGAGGGATCTTGCTCCTGAAAAGTGGAATTGGGATTCTTACAGACTGTA--CTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCACAGTA--TGaagtcaaggaaagagacattgaCTGCTGCAACATCCCCTTC---------------AAAAGCAGCCTATGGAACTGGA--GCCAATACAGACAAATTCATT

a score=15750
s chr3           14434637 446 + 160039680 aGGGGCAGAGATGATGACCCTTTTTATTCCACCCTTCAAGTGGGCCCCAGCCTTCTCCATGGTGATAAAGAGGCCAGGAGACTCCATGACATACTCAACACCAGCATCACCCCATTTGATGTTAGTGGGATCTTCCTCCTGGAAGATGGTGATGAGCTTCCCATTGATGACAAGTTTCCCATTCTGGGCCTTGACTGTGCCATTGAACTTGCCTTGGGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGAGTCGTTGATGGCAACAATCTCCACGTTGCC-ATGTGGAGAGCAAACAGCAGCCCTGGTAACCAGGCCCCCAATATGACCAAATCAGTTCACACCAACCTTCACCATTTTGTCTATGGAATGAGGCTGACACTGCACAAGAAGATGCAACTGTCTCTGGAACAGGGAGGAGCAGAAAACCA
s HiC_scaffold_1 97937484 421 + 233722169 AGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATAA-ATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTCCTGAAAGCAGACTG-------GATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaaaaaataaaaca

a score=14245
s chr3           14434689 381 + 160039680 TTCTCCATGGTGATAAAGAGGCCAGGAGACTCCATGACATACTCAACACCAGCATCACCCCATTTGATGTTAGTGGGATCTTCCTCCTGGAAGATGGTGATGAGCTTCCCATTGATGACAAGTTTCCCATTCTGGGCCTTGACTGTGCCATTGAACTTGCCTTGGGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGAGTCGTTGATGGCAACAATCTCCACGTTGCCATGTGGAGAGCAAACAGCAGCCCTGGTAACCAGGCCCCCAATATGACCAAATCAGTTCACACCAACCTTCACCATTTTGTCT-----ATGGAATGAGGCTGACACTGCACAAGAAGATGCAACTGTCTCTGGAACAGGGAG
s HiC_scaffold_1  9528016 372 + 233722169 TTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGCT------GGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATG-GCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=43185
s chr3           14510882 1280 + 160039680 GGGTTGTGTAGCGAACTTTATTGGTGATATTCAAGAGAGTAGGGAGGGTTCCCTAGGCCTCTCCTGTTATTAAGGGGATCTGGGAAGGAA----ATTGTGAGGGAGATGCTCAGTGT----TAGGGCCGAGTTGGGACAGGGACTCCTCACCAACTGAGGGCCTCTCTCTTGCTCAGTATACTTGCTGGGGTGGGTGGTCCAGGGTTTTTTACTCCTTGGAGGCCATGTAGGCCAGGAGGTCCACCACCCTGTTTCTGTAGCCATATTCATTGCCATGACAGGAAATGAGCTTTACAAAGTTGTCATTGAGAGAAATGCCAGCCCCAGAATCAAAGGTGGAAGACTGAGATTTGCTGTTGAAATCTC--AGGAAACAACCTGGTCCCCAGTGTAACCACGTGATGCCCTTTAGTGGGCCCTCAGATGCCTGCTTCATCACCTTCCTGATGCCATCAGACTTGGCAAGTTTCTCCAGGAGGTGTGTCAGATCTACAACAGATACATTGGGAGTAGGAACACAGAAGGCCATGCCAGTGAGCTACCCTTTCAGCTCTAGGGTGACCTTGCCCACAGCCTTCACAGCAACAGTGGATGCAGTGGATGTTCTGGGCAGCCCCAATGCCATCACGCCACAGCTTTCCAGAGGGAACATCCACAGTCTTCTAACTGGCAGAGATGGCATGGACCATGTTCATGAGCCCTTCTACGATGCCAAAGTTCTCATGGATGACCTTGGGGGGGGGGGGGGCGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCATATTTCTTGTGGTTCACATCCATCACAAACATGGGGACATCGGCAGAAAGGGCAGAGACGGTGACCCTTTTGGTCCCACCCTTCAAGTGGGCCCCCGCCTTCTCCATGGTGGTGAAGACGCCAGTAGACTCCACGACATACTCAGCACCAGCATCACCACGTTTGATATTAGCAGGATCTCGCTCCTGGAAGGTGGTGATGGGCTTCCGGTTGATGACAAGCTTCCCATTCTCAGCCTTGACTATGGGGTTGAACTTGCCATGGGCAGAGTCAGACTGGAACATGTACAGCATACGGTTGAGGTAAATGAACGGGTCGTTGATGGCCACAATCTCTACTTTGCCAAGTGCAGATCAGGAGGCAGCCCTGGTAACCGAGCACCCAATACTGCCAAATCTGTTCACACCGACCTTCACCATTTTGCCTACAGGACGAGGCTGGCACTGCACAGGAAGATGTGGCTGTCTCTGGAACAGGGAGGAGCAa
s HiC_scaffold_1 97936683 1215 + 233722169 GGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA------------TCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctctt-ttcattt--cttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCCAGGT--TGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCA------GCATAGGATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATC--CAGTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGG-----GTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAGG-TATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATA-AATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGC------CTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaaaaaa

a score=26544
s chr3           14510979 1227 + 160039680 GGGAGATGCTCAG--TGTT--AGGGCCGAGTTGGGACAGGGACTCCTCACCAACTGAGGGCCTCTCTCTTGCTCAGTATACTTGCT---GGGGTGGGTGGTCCAGGGTTTTTTACTCCTTGGAGGCCATGTAGGCCAGGAGGTCCACCACCCTGTTTCTGTAGCCATATTCATTGCCATGACAGGAAATGAGCTTTACAAAGTTGTCATT---------------------------------------------------------------------GAGAGAAATGCCAGCCCCAGAATCAA--------------------------AGGTGGAAGACTGAGATTTGCTGTTGAAATCTCAGGAAACAACCTGGTCCCCAGTGTAACCA-------CGTGATGCCCTTTAGTGGGCCCTCAGATGCCTGCTTCATCACCTTCCTGATGCCATCAGACTTGGCAAGTTTCTCCAGGAGGTGT--------GTCAGATCTACAACAGATACATTGGGAGTAGGAACACAGAAGGCCA-TGCCAGTGAGCTACCCTTTCAGCTCTAGGG-TGACCTTGCCCACAGCCTTCACAGCAACAGTGGATGCAGT-----GGATG---TTCTGGGCAGCCCCAATGCCATCACGCCACAGCTTTC-CAGAGGGAACATCCACAGTCTTCTAACTGGCAGAGATGGCATGGACCATGTTCATGAGCCCTTCTACGATGCCAAAGTTCTCATGGATGACCTTGGGGGGGGGGGGGGCGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCATATTTCTTGTGGTTCACATCCATCACAAACATGGGGACATCGGCAGAAAGGGCAGAGACGGTGACCCTTTTGGTCCCACCCTTCAAGTGGGCCCCCGCCTTCTCCATGGTGGTGAAGACGCCAGTAGACTCCACGACATACTCAGCACCAGCATCACCACGTTTGATATTAGCAGGATCTCGCTCCTGGAAGGTGGTGATGGGCTTCCGGTTGATGACAAGCTTCCCATTCTCAGCCTTGACTATGGGGTTGAACTTGCCATGGGCAGAGTCAGACTGGAACATGTACAGCATACGGTTGAGGTAAATGAACGGGTCGTTGATGGCCACAATCTCTACTTTGCCAAGTGCAGATCAGGAGGCAGCCCTGGTAACCGAGCACCCAATACTGCCAAATCTGTTCACACCGACCTTCACCATTTTGCCTACAGGACG----AGGCTGGCACTGCACAGGAAGATGTGGCTGTCTCTGGAACAGGGAG--GAGCAaagaccacatttcaagtttttaacatctatacccaaacacaaggg
s HiC_scaffold_1  9527184 1252 + 233722169 GGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAG-CAGGGA-TCCATAGCA--TGAGACAgtctttctttcttactcttcCTTCTCCTGGAGCTGGTGATCC-GGAAGGCCCAATCCTTGGATGTC---------------------------TTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATTTCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAG-GATTCCTTTGAGCCCTGGTTCACCATCTT---AAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTC--TTGTAGGAATGACATTGCTTACAG---TGACAGTAT--ATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGG------TTAGCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGGC---------------------TCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC----TGGAGTTAA--AGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAGTTGAGGCAGGGACACATCT----TTTTTGAATGATAAACTGGAacgaaaagg

a score=5728
s chr3            14606288 131 + 160039680 TTGTATGAAACATTGACTTTATTGATCTTTGGGGGAATGTGATGCACTATCTCTGTATTACAACTGAGCCATTAGTCGTGTCGCTTCATCAACGTTAGCTGGTTCATTTTCATGGTGCTTCTGAAGAATCA
s HiC_scaffold_1 182624377 128 + 233722169 TTGTATAAAATGCTTATTTCATTAAGTTT---GTTTATTTGATACATATCCACTGTATTACAATTGAGCCATTCATCTTGCAGCTTCATCAACATTAATCAGTTCATTTTCATGATGCTGCTGATTAACCA

a score=7459
s chr3            14607170 133 + 160039680 ACTTACCAGCTCTTTCTGCACAGATTTAAGAGAAAGGCTTTTTGAGAAGTTTGCAAGTTCTTTCTGTATATTTACAAAAGCTCTGTTCATTCTGTTGACTTTTTCATGATTCATAATGTTTATCTGTTAAAAA
s HiC_scaffold_1 182624497 131 + 233722169 ATTAACCAGCTCTTTCTGCA--GTTTCAAGAGTAAGGTTTTTTGAGAAGTGAGCGAGTTCCTTCTGAATGTTTACAAAAACATTACTCATTCTGCAAACCTTTTCATCATTCACAATGTTTATCTTCTTAAGA

a score=8163
s chr3            14609531 128 + 160039680 AATACTCACCTTCTTAAGATTAGTAGTAACTGGTTTTGCCTTGTTTTTAGCCTTGAAAGTTTTGTGGCTAGCTATATGAAATACATTCCTGGACTTCTGCCCTTTTAATTTGTTCTTGGCCATTGTCT
s HiC_scaffold_1 182624609 128 + 233722169 AATGTTTATCTTCTTAAGATTAGAGGTAACTGATTTTGCTTTGCCTTTAGACTTAAAGCATTCTTGGTTGGCTATGTGAAATACTGTCTTGGACTTCTGCCCTCTTAGTTTATTCTTGGCCATTGTCT

a score=17641
s chr3           14802237 380 + 160039680 GTTTATTGAAAGAAACTACTCCTTAGCCCACATATTCATGTTTCATAGCTCAGGAGCGCAGGTCAGCAATGAACTTCTATGGAGCGCAATCCAAAGAATTCTTTGCATTCTGAAATCACTTCCCACTCTGAAAGATACCAGCCTTCCTCATCTCTTCGAACTCTTTCATGGAATCATAATTTCCGTAGAATTCTACATACACCTTCTTTCTTGATTCAGCCACTCCAAACTTATAGGCAGCGGCAACTCCCAGGGCCACAATGAATGCGCCAACAAT-----ATGAACCCGCAGACACTTGGCCAGAAGACCACGCATCTGTGGTTTGGGCAACAGCGGACCGGACCTCATGGTAGCCAATGTCCTCTACACCAACGTCCTTCCC
s HiC_scaffold_1 47543955 380 + 233722169 GTTTGTCATGAGGAACTATTTCTCAGCTCACTTATTGATGTTTCACAATTCAAGAACACCAATCAGTTACAGATGTCTATGGTGCTCAGTTCAAAGAAATCTTTTTATTCCTAA-TCACTTTGCACTCTGAAAGATACCAGTGTTCCTCATTTCTTCATTAGTTTTTATGGAATCATAATTTCTGCAGAAATCTACATACATCTTCTTTCTTGGTTCAGTCACACTAAACTTATAGAAAGCTGCACCCTGTGGTGAGACAATGAATGCTCCAATAATACACAATGCTCCCAAAAATGCTTAGCCAGAAGACC-CACATCTGAGGTTT---CACTGTAAAAATGGAACTCATGATAATTAATGTCTTCAATGCCAACATCCTTTCC

a score=8117
s chr3           14802242 285 + 160039680 TTGAAAGAAACTACTCCTTAGCCCACATATTCATGTTTCATAGCTCAGGAGCGCAGGTCAGCAATGAACTTCTATGG--AGCG-----------CAATCCAAAGAA-TTCTTTGCATTCTGAAATCACTTCCCACTCTGAAAGATACCAGCCTTCCTCATCTCTTCGAACTCTTTCATGGAATCATAATTTCCGTAGAATTCTACATACACCTTCTTTCTTGATTCAGCCACTCCAAACTTATAGGCAGCGGCAACTCCCAGGGCCACAATGAATGCGCCAACAATATGAACCCGCAGA
s HiC_scaffold_1 93109871 274 + 233722169 TTAAGAGAAACAACTCATAAGCCTGCATATTCATTCTTCATAGTTCTGAAACACAGATCAGTGACCAGCTTCTTCAATCAGTGATAAACTTCTTCAATCCAAAGAAATTCTTTAC--TCAAAAAATAGTTTGCATTC---ATGATGGGAGCCATTTTCACCTC---AAAATCTTTGATGGAGTCATGACTTGTATAGACATCTATGAATACCACCTTTCTTGATTCTGCCACAGCAAATTTACAGAGAG-----------------ACAATAAATCTTTTAAGAATATGAAATCATAGA

a score=36017
s chr3           14973342 1273 + 160039680 AAAACACATTCCTTTTTTTTGGGGGGGGTGCAGTAAATTTTATTTATGATACGCAAGAGAGTAGGGATGGCTCCCTAGGCCCATCTTGTTATTATGGGGGTCTGGGATGGAAATTGTGAGGA----AGATGCTCAG--TCTTGGGGGAC-AAGTTGGGGCAGGGACTCCTCAGCAACGGAGGGCCTCTCTCTTGCTCTCAGTGTCCTTTCTGGCATGTGCAGTCCAGGGTTTCTTATTCCTTGGAGGACATGTAGGCC---------------CTGTTGCTATAGCCATATTCATTGTCATATCAGGAAATGAGCTTTACAAAGTTGTCATTGAGAGCAATGCCAGACCCAGCATCAAAGGTGGAAGAGTGGGAGTTTCAGTTGAAGTCTCA--GGAGACAACCTGGTCCTCAGTGTAAACCAGTATGCCCTTCAGTGAACCCTCAGATGCCTGCTTCACCACGTTCTTGATATTATCAGACTTCTCAGGTTACTCCAGGAGGCATGTCAGTTCCACAACAGATACACTGGGGGTAGGAACATGGAAGACCATGCCAGTGAGCTTCCTGTTCAGCTCTGGGATAACCTTGCTCACAGCTTTGGCAGCACCAGTGAATGCAGGGATGACATCCTGGACAGTCCCATGAC---------ACAGCTTTCCAGAGGGGCCATCCACAGTCTTCTGAGTGGCAGTGATGGCATGGGTCATGGCCATAAGCCCTTCCAGAATGTCAAAGTTGTCATGGATGACCTTAGCCACAggtgggggtgggggtgggggCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAATGAGTTGTCATATTCCTCATGGTTCACACCTATCACAAACATGGGGGCATTGGCAGAAAGGGCAGAGATAATGACCCTTTT-GCCCCCCCCTTCAAGTGGGCCCTGGACTTCTCCATGGTGAAG---------------TCCATGACATACTCAGCACCAGCATCACCCCATTTGATGTTAGCGGAATTTTGCGCCTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAGCCTTGACTGTACCATTGAACTTGCCATGGGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAACGGGTCATTGATGCTAACAATCTCCACTTTGCCAAGTACAGAGCAGAAGGCAGTCCTGGTAATCAGGCTCCCAATATGGCCAAATCCATTCTCACCGACCTTCACCATTTTGTCTACTGGACGAGGCTGGCACTGCACAAGAAGATGCAGCTGTCTCTGGAACAAGGTGGA
s HiC_scaffold_1 97936668 1226 + 233722169 aaaatacaAACTTTT-------GGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCATCTTTCCCC------------TTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctcttt---------tcatttct----tgctcAGGCT--GGTGGCCTACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttctgT---AGCCAGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGAT---CTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCA----------------GGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATA-AATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGC------CTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=26011
s chr3           14973418 1236 + 160039680 AGGCCCATCTTGTTATTATGGGGGTCTGGGATGGAAATTGTG--------AGGAAGATGCTCAG--TCTTGGGGGACAAGTTGGGGCAGGGACTCCTCAGCAACGGAGGGCCTCTCT--CTTGCTCTCAGTGTCCTTTCTGGCATGTGCAGTCCAGGGTTTCTTATTCCTTGGAGGACATGTAGGCCCTGTTGCTATAGCCATATTCATTGTCATATCAGGAAATGAGCTTTACAAAGTTGTCATT---------------------------------------------------------------------------GAGAGCAATGCCAGACCCAGC--------------------ATCAAAGGTGGAAGAGTGGGAGTTTCAGTTGAAGTCTCAGGAGACAACCTGGTCCTCAGTGTAAA--------CCAGTATGCCCTTCAGTGAACCCTCAGATGCCTGCTTCACCACGTTCTTGATATTATCAGACTTCTCAGGTTACTCCAGGAGG--------CATGTCAGTTCCACAACAGATACACTGGGGGTAGGAACATGGAAGACCA-TGCCAGTGAGCTTCCTGTTCAGCTCTGGGATAACCTTGCTCACAGCTTTGGCAGCAC----CAGTGAATGCAGGGATGACATCCTGGACAGTCCCA---------TGACACAGCTTTC-CAGAGGGGCCATCCACAGTCTTCTGAGTGGCAGTGATGGCATGGGTCATGGCCATAAGCCCTTCCAGAATGTCAAAGTTGTCATGGATGACCTTAGCCACAggtgggggtgggggtgggggCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAATGAGTTGTCATATTCCTCATGGTTCACACCTATCACAAACATGGGGGCATTGGCAGAAAGGGCAGAGATAATGACCCTTTTGCCCCCCCCTTCAAGTGGGCCCTGGACTTCTCCA---TGGTGAAG------------TCCATGACATACTCAGCACCAGCATCACCCCATTTGATGTTAGCGGAATTTTGCGCCTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAGCCTTGACTGTACCATTGAACTTGCCATGGGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAACGGGTCATTGATGCTAACAATCTCCACTTTGCCAAGTACAGAGCAGAAGGCAGTCCTGGTAATCAGGCTCCCAATATGGCCAAATCCATTCTCACCGACCTTCACCATTTTGTCTACTGGACG----AGGCTGGCACTGCACAAGAAGATGCAGCTGTCTCTGGAAC---AAGGTGGAGCAGAGGGCCTAAAAACACATTTCT----AAGGGCAGACTTGA
s HiC_scaffold_1  9527136 1291 + 233722169 AGACCCATCCT-TTGTAA--GGAGTCTGTGGTAAAACCTATGCCAAAAAAGGGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAGCAGGGA-TCCATAGCATGAGACAgtctttctttcttactctt----cCTTCTCCTGGAGCTGGTGATCCGGAAGGCCCAATCCTTGGATGTC------------TTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATTTCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAG-GATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTA--------------GGTGGG---TTAGCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGGC--------------------TCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC------TGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAATTA-----CTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAGTTGAGGCAGGG---------ACACATCTTTTTTGAATGATAAACTGGA

a score=14265
s chr3           14973562 1095 + 160039680 GGTTTCTTATTCCTTGGAGGACATGTAGGCCCT--------------------GTTGCTATAGCCATATTCATTGTCATATCAGGAAATGAGCTTTAC-----AAAGTTGTCATTGAGAGCAATGCCAGACCCAGCATCAAAGGTGGAAGAGTGGGAGTTTCAGTTGAAGTCTC--AGGAGACAACCTGGTCCTCAGTGTAAAC----CAGTATGCCCTTCAGTGAACCCTCAGATGCCTGCTTCA-CCACGTTCTTGATATTATCAGACTTCTCAGGTTACTCCAGGAGGCATGTCAG-------------------TTCCACAA--CAGATACACTGGGGGTAGGAACATGGAAGACCATGCCAGTGAGCTTCCTGTTCAGCTCTGGGATAACCTTGCTCACAGCTTTGGCAGCACCAGTGAATGCAGGGATGACATCCTGGACAGTC--CCATGACACAGCTTTCC---AGAGGGGCCATCCACAGT--CTTCTGAGTGGCAGTGATGGCATGGGTCATGGCCATAAGCCCTTCCAGAATGTCAAAGTTGTCA-TGGATGACCTTAGCCA--------------------CAggtgggggtgggggtg----------------------------ggg-------------------------------------------------------gCTAAGCAGTTG----------------------------------------------------------------GTGGTGCAGGATGCATTGCTGACAATCTTGAATGAGTTGTCATATTCCTCATGGTTCACACCTATCACAAACATGGGGGCATTGGCAGAAAGGGCAGAGATAATGACCCTTTTGCCCCCCCCTTCAAGTGGGCCCTGGACTTCTCCATGGTGAAGTCCATGACATACTCAGCA---------------CCAGCATCACCCCATT---TGATGTTAGCGGAATTTTGCGCCTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAGCCTTGACTGTACCATTGAACTTGCCATGGGTGGAGTCATACTGGAACATGTAGACCAT-GTAGTTGAGGTCAATGAACGGGTCATTGATGCTAACAATCTCCACTTTGCCAAGTACAGAGCAGAAGGCAGTCCTGGTAATCAGGCTCCCAATATGGCCAAATCCATTCTCACCGACCTTCACCATTTTGTCTACTGGACGAGGCTGG----CACTGCACAAGAA--GATGCAGCTGTCTCTGGAACAAGGTGGAGCAGAGGGCCTAAAAACACATTTCTAAGGGCAGACTTGAGTA
s HiC_scaffold_1  3814692 1270 + 233722169 GGACTCTGACTCCTTAGAGATCTTGTGAATCATAAAGTACCTCCACCCCCACAGTTGCTATGGCCAGATTCATGGTCATACCAGGAAATAACCTAACCGGAGTACAGTATTCACTCAGAGGAATACCCACCCCAG----AAAAGCAGA-------------CAGTAGATGTCACCAAGGCAACCAGCTATTCCT----GTAAACAGCTCAAGGTGCCTTCCAGGGCTCCAT--GACATTTGCTTCATCCCCCTTCTTGATATTAT---ATTTGACACCTTTGTCCCAGAGGCAGATTAAATCTATGTTTCATCAAACCCTCCACAAGCTCGCCACCCCGGGAATGGGCAGCTGGAAGGCCAATTCAATGAGCGTCCTGCTCAGCTC-AGAATAGCCTTGCACACGGCCATGGCGGGGTCAG-GGCTCCAGGGACAG------GGACTGCTAACGTTAACTGAGCTTGCTGGAAGAGGGGGCATTCAGAATAATTTCTGGGAGACAGTGATGGCATAGACCACAGCCTTAAATTCCTCCA-ATTACAGAAGTTATTAACAGTTGACACTGGCCAGGTGTCCACCCCTTGGTATgcaggtggcattgctgatatatgtatatatttttaatttgcaataCTGGGCCTTTCTGCATTCCCATCCCCTGCTTATATGTTTGAAAAAGTGTCTCTCTTAGTTGCTAAGTAGATACATCCTGGGCTTAAATTTCCAGTTCTCCTGTCTCatccttcctgagtgctaggattatggatgtgtgccaccatacccagccccAACAATCTCGAA---GCAATCATCGTTCTCATAGTTCTCTCCTGTTCCAAGTATGTGG-CATCGACACAAGTGGTAGGGATGATAATACTTTGGCTTCACCTCCGAAGCGGGTGCTG------CCTATGGCTAAGATGATGAGGAGCACAGCGGATTGCAGCATGTGTTCAACATCGCATCACTATCTGATGCTGGAGGGATCTTGCTCCTGAAAAGTGGAATTGGGATTCTTACAGACTGTA--CTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCACAGTA--TGaagtcaaggaaagagacattgaCTGCTGCAACATCCCCTTC---------------AAAAGCAGCCTATGGAACTGGA--GCCAATACAGACAAATTCATT----------TGATTCATTTAGCTCACTGGAATGAGCTAAATATCATCACACCAATAGTGAGGCATCTGTAGGTGTAGGGAGCTGTGAGAGAGCTGAGAACAACACAGTTC--AGGTCAAATCCAAGCA

a score=11741
s chr3           15014648 464 + 160039680 TGGACCACATGTGCAATGGAGGTCTTCAAGGACTACAATAGAGCTAAAAAAT-CCTATTGCCTATTGATGCCATAGCCACCATAATAGCACA-----ATGCATTATTCATGAGTTTCTCATGAATCTGATCTGAACTAATATACTGAACTAACAGCCAAGTGAGAGCATAGAGCATACAATTGCTTATAGGTCATAATACTTAATAATGACGATAAATGTTGGTATTACTTGCTTAACAGATTTCTATATCTGCACCATCAATCTTTATTTTAGAGTATATTCATTCTAATTCT---AAACATATCTACTGTAAAACAGT----TCTGTGACACTAACAGCAATTTCATGTACTTCATGTTTTTATCATATCAAAAGCTACACAGTGATGTATCTATACTGTCTAGCTTTCCATAGATACATTCTATGATATTTACACAATAATGATATTGCCTTCTGTT--TTATTTCAGAGCATATC
s HiC_scaffold_1  1561587 450 + 233722169 TGGACTGCATATTCAACAGTGGCCCC---ATAATACAATGgagctgaaaatttccttttGCCTAGTGATGatgtggctattataatgtcataGGAAGATGAATTATTTATGTATTGGTAGTGATGCTAATATAAACAAACCTACTATGCTAACAGTTATACAAAAGTATAGCACATACAATTATATATAGTGCATAACACTTGATAATGATAATAGACAACTGTACTGTTGGCTTATGCTTTTACTATA----CATTTTC-ATCATTACTTTAGAATGTATTCCTTCTAattatataaaacacatttaCTCTAAGACAGTAAGATGTGTTGTGCAGGCAGCAACCTCATGTATCTTGTGTTTACAGAATCTCCAGGG-TGCATTGAGAGG---CCTTGCCATTTAGGTCTGTGCAGAT-CGTTCCATGATGT----------------TTGCCTCCTGATGCCTTTCTCAGAACCTATC

a score=4684
s chr3           15014654 193 + 160039680 ACATGTGCAATGGAGGTCTTCAAGGACTACAATAGAGCTAAAA---AATCCTATTGCCTATTGATGCCATAGCCACCATAATAGCACAATGCATTATTCATGAGTTTCTCATGAATCTGATCTGAA-----CTAATATACTGAACTAACAGCCAAGTGAGAGCATAGAGCATACAATTGCTTATAGGTCATAATACTTAAT
s HiC_scaffold_1 13240238 197 + 233722169 ACATGTACGGTGATGATTCCTCAAGATTATAATGGAGCTAAAATCTACTCCCATCACCTGGTAACGTTGAAACCATCATAATG---CAGTGCATTACTCACATGTCTCGGGTGATGCTGCTGTAAACAGACCTGATGTACT-CACTGTCATTCATGTACATGTACTGCACATATGGTTACATATGATACACTATACTTAAT

a score=3878
s chr3           15200830 116 + 160039680 ATGGATTCATTTTCTTTTTAAACAAGGAGAATTAAAGATGTAGATTTAGGAGTATAGTTCAGTAATAAAGTACTTGTCTAGTATGTATAAGGCACTGGATTCAATATTCAATGGCA
s HiC_scaffold_1 77222325 114 + 233722169 atatatttttttttaatttaaaatatcagagC-ACAGTTGTAGAAT-GGCAGTGTGGTTCAGTGATAAAGCACTTGCTTAGTAGGTGTGAGACTTTGGTTTCAATGCTCAGtacca

a score=3625
s chr3            15200876 85 + 160039680 TAGGAGTATAGTTCAGTAATAAAGTACTTGTCTAGTATGTATAAGGCACTGGATTCAATATTCAATGGCAGACTGCTTGCTTAAT
s HiC_scaffold_1 100454879 83 + 233722169 TGGAAATACAGCTCTGTAGTAGATCACTTGCCCAGCATGTATAAGGCTCTAGGTTCAACACTCAGT-ACAGAAT-CTTAATTAAT

a score=4474
s chr3           16177536 200 + 160039680 TGGCCTGTGCTTTGGGCTTTGGTACATTCCTGAGCTCTCTGTGTCATATTTCCTATAGCCTTTATAGTCAGGACTATGGGCTCCCACCCAGGTTGGTTGACTAGTGAAAAGAATCCCCAGATTT---TAGAAAATTGAACATCTGAGAGCACCTGTGTGATGTCAGAT--GAGAAAAGCTATGGGtggggctgagggttggggtt
s HiC_scaffold_1 70002244 204 + 233722169 TGGCTTGTGCTATGGACCCGGGTGCATACCTATTCTTATAATGTCATATTTCCTATGTCCTTCATGTTTGAGGCTGTGAGCTACTACCTGGAACAGTTTATCCGGGGAAAGGGTTTCTCCATGTGGAGGAGGAAGTGAGTATCTCGGAGGGCCAGGAGAATCACAGGCTGGAGAAGGGCTA-GGCAAGGACAGAGGCAGGTGGTT

a score=26527
s chr3            16516445 608 + 160039680 TAAAGAAAGTTTTTTTTTAAAAATATAGTTTAATGTAGTTTTATAGCAAACTTACAGGAACAGAACAGAAGACAGACAACATTAAAAGCATGTGTTTGCATGCAGTACAACTCAG--TTAGAAAATGACAGTGAATGGATAGAAT---------GATAAAAATGCTACAAACACCACTTAGTTGCCATTAATAGGAAATTTACTTATTTTTTA-AAAATCCAAATGCTGGCATTGTCTAGAAAATTTTAACAGGTTTATTTATAATTGTTCTAAAGTTGAACTGTTGAAATGTGTTCACTGAAACATTTTG-CTTGAATTAATGCTTTACA-TCTTGAATTTATATTAAATATTCACACACAAATGAACATGGAGAAACTGCTAATACCTGATTCTGTCCCCTAGGTTTCCACTAGCAATCATATACTTAAGTACC-TTTGACCCCAT-GAAAAAAATATCTAACATTCAGAACTACTGATAACAGGGAGAAGAGGAAAAACTTTTTTTTTTTTTAGAATGAAATGTTTCCCCTCATAGTGGACTGTTAAGCACATTCTCCAAGCATGGGGCATGCTAGCTTGATGTCTTTTAGCATAATTGTTACACGGTTGGCATAGATAGc
s HiC_scaffold_1 184815152 582 + 233722169 taaaaattatcctttttta------tagtttaatgtattttaatagtaAAC--AGAGGAACAGCACGGAA-AGATACAACATTAAAAACATGT----------AGCATAAAAGAGGCTCAGAAAAATATAGTGACTAGATGGAATCTACTATGTGAGTAAAATGTTACAAGTACC--TTAGTTGCTGTCCATAAgaaatttacttcttttaaagaaaatccaAATGCTGGCATTATTCAGAAAAATTTAATAGATTTATTTGTAATTGTTATCAAGTTGAACTGCTGAAACTTGTTCACTGAAACATTTTGACTTGCATTAATGTTTTACATTCctacatgaatattaaaaattcatacacaaataaaaatagaaaaac------taccTGATTTCGGTTCCTTATTTTCCATTCACAGTCATGTAATTAGGTACCTTTTGACCCCATGGGAAAAAATATCTAACATTCAAAACTacaaataacaagagaaagaa-------------ttttTTGAGAATGAAATGTTTTCCACTGTAGTGGACTCCTAAGCATGTTCTCCATGTATGGTG--TGGTGGGTGGATATCTTTTGGCATAGCAGTTCCACATTTGGCAGGGATAGC

a score=12353
s chr3           16516591 432 + 160039680 AAAAATGCTACAAACACCACTTAGTTGCCATTAATAGGAAATTTACTTATTTTTTAAAAATCCAAATGCTGGCATTGTCTAGAAAATTTTAACAGGTTTATTTATAATTGTTCTAAAGTTGAACTGTTGAAATGTGTTCACTGAAACATTTTG-CTTGAATTAATGCTTTACATCTTGAATTTATATTA-----------------------------------------AATATTCACACACAAATGAACATGGAGAAACTGCTAATACCTGA-TTCTGTCCCCTAGGTTTCCACTAGCAATCATATACTTAAGTAC-CTTTGACCCCATGAAAAAAATATCTAACATTCAGAACTACTGATAACAGGGAGAAGAGGAAAAACTTTTTTTTTTTTT-------AGAATGAAATGTTTCCCCTCATAGTGGACTGTTAAGCACATTCTCCAAGCATGGGGC-ATGCTAGCTTGATGTCTTTTAG
s HiC_scaffold_1 53733766 477 + 233722169 AAAAATGCTACAAACACCATTTAGTAGTTATCAGTAAGAAATGCATTTCCTTTGAAAAGCTCTAAATGCCAGCATTGTacagagaa-atcagtagttttA-TGAAGATTGTTATGAAGCTGAACTGCTACAGCTGGTCCCCTGAGACATTTTGACCTGTGCTGGTGCTTTACATTCTGCCTTTGTATTAAAATTCACCCACAGTGATCCCTAGTTGCTGCCTCCCCCAACAAAATTCACCCACAGGGGGAAACGGAGGGACCACATGTACCAGATTTCTATCCCTCATTGGTCCACTCACAGTCATATATTTGGGCACATTTTGAACTCTGGGGTAAAATA--CACCACTCAGAACTATTAATaactggaagaaga--aaaatcttTTCCTGCATGTGTGGGAGAGAATGAACTATCTCCTCTT-CCGAGGATTCCTAAGCGTGCTCTCCACAGAGGTGGCTTTGCTCGCTGACTCTCTTCTGG

a score=16441
s chr3           16516615 442 + 160039680 TTGCCATTAATAGGAAATTTACTTATTTTTTAAAAA--TCCAAATGCTGGCATTGTCTAGAAAATTTTAACAGGTTTATTTATAATTGTTCTAAAGTTGAACTGTTGAAATGTGTTCACTGAAACATTTTG-CTTGAATTAATGCTTTACAT-CTTGAATTTATATTAAATATTCACACACAAATGAACATGGAGAAACTGCTAATACCTGA-TTCTGTCCCCTAGGTTTCCACTAGCAATCAT---ATACTTAAGTACC-TTTGACCCCATGAAAAAAATATCTAACATTCAGAACTACTGATAACAGGGAGAAGAG------------------------------------------------------------------------------------------------------GAAAAACTTTTTTTTTTTTTAGAATGAAATGTTTCCCCTCATAGTGGACTGTTAAGCACATTCTCCAAGCATGGGGCATGCTAGCTTGATGTCTTTTAGCATAATTGTTACACGGTTGGCATAGATAGcacac
s HiC_scaffold_1 92682075 529 + 233722169 TTTTCATCAATAagaaatttgcttattttttaaaaaaataccaatgTCATCATTGTCCAGAAAAATT-AACAG----ATTTATCATTGTTATAAAGTAGAACTGCTGAAATTTGTTCACTGAAATATTTTGACTTGCATTAATGCTTTACATCCCtgtattaatattaaaaattcacacaaaaatcaaaatggaaaaactaGCAGTATCTGATTTCTGTCCTCTA-TTTTCCACTCATAATCATGTAGTACTTAAGTACCTTTTGACCCCATGTGAGGA------AAAATTCAGAACTACTAACaataggaagaagaggaagaagaagaaggagaggaaaaggaggagaaaggagaagtggaagaaaaagaggaagtggcagtggaagaagaaaaagaggaagagaaagaagtggGAGAAGAAAAA---------TTTGGGGGATGAAATTTTTCCCATCATACTGGATTCTTAAGCAGGTTCTCCACCTCTGCAGTGTTCTATC---GGGTAATTTGGCATCACTGTTACACATTTGGCATGGAGAGCACAC

a score=11294
s chr3            16516729 308 + 160039680 CACTGAAACATTTTGCTTGAATTAATGCTTTACATCT---------TGAATTTATATTAAATATTCA--CACACAAATGAACATGGAGAAACTGCTAATACCTGATTCTGTCCCCTAGGTTTCCACTAGCAATCATATACTTAAGTACCTTT---GACCCCATGA-------AAAAAATATCTAACATTCAGAACTACTGATAACAGGGAGAAGAGGAAAAACTTTTTTTTTTTTTAGAATGAAATGTTTCCCCTCATAGTGGACTGTTAAGCACATTCTCCAAGCATGGGGCATGCTAGCTTGATGTCTTTTAGCATAATTGTTACAC
s HiC_scaffold_1 179155503 301 + 233722169 CACTGAAACATTTGACTTACCTTAATGTTTCGCATTCATGCTTCTCTGTATTAGTATTAAAacttcatacacacacaccaaaatGGA---ACGATCAATACTTGAT-CTGTCCCT---------------AATCATGTGCTTAGGTAACTTTTTTAACCCCATGGTGGAGTGGGGAGATAGCTAACATTCAGAACTACCAATAACaggcataaaataaaaaa------tttttttgagaatgaaatatttttcatcataaTGAA---TTAAGCATGTTCTTCACATATAGGGCCTGCTAGTTGGATATCTTGTGGCACAATTGTTACAC

a score=4423
s chr3            16976561 103 + 160039680 CTGCTCCTACAGTCATTTCACCTATGACTGCTGTGTCACTTGTGTGTC-------------------------------TATGTGCAGTGTTCTGACCTATGAACATCTGAATAATTAGTAGCCTAATGTTCCC
s HiC_scaffold_1 194511548 134 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=11357
s chr3            17180753 355 + 160039680 TGGAAATGATGGCCACTTTTACTAAGTCAACAACCAGAACCAGAGGAACTTATGAGAGGC-CACAGTGTTATATATGGAAAAAAGTTAATAGCCAGACTTTTTGATATTTGAAAACTCTTATTTCTAGATACCACAATGATGAAATTACCTTCCAGAAAAAGTACCTTAGGCACTACATGGTTATGTTTGTACAATGTCTTTAAGAAGGACTTTTGAAGA-TTGTTCGTAGTGACtatataaatattttaagaaaatca----------ttataatttattGTTGATTAAACT-TGCAGTAATTGAACTTAGTTTATGACACA-GAATCATTTTGATATTCTTATGTTCAAACTGACATAAAAGTCTAT
s HiC_scaffold_1 164151317 366 + 233722169 TGGAGAGGACAGCCATTTTGACTATGTGCACGACCAGAACCAGAAGAACTTAGGAGGGGTGCACAGTGTGACCTATCGGgacaaactcatgactgcactttGAGAGA-CCAAAGCATCTGACTTCCAGTCACCATCGTAGTGTCATTGCATTCCATGAGAAGCATCTT-GGCATCACATGGACGTGTGTGTGCAA-GTCCTTAAGGAAGAGTTTCTAAGAGGTGTTTTCAGCGTCCATGTAAATACTGAAAGATAACCACAATAGCTAGTCCTAATTTACAGTTGACTGCATTCTCCATGAAATGAAGGTAGTTAAAGGCTCAGGAATCATTTcgatattctaattttaaaattggaGTAAAAGTCTAT

a score=22392
s chr3           17230126  904 + 160039680 CATCTAATGATTTGGGTTAGGATATACTAACTGCAGCCAGAACAGGTATATCATATTCAGTGTCCTAAATTACCC--AGGATAGAGTACTGAAAGGCTGACTGCTTCTTCATAGGAGTTACTAATAGCTATTT--------TTCATAGATAATGCCTGACCTTTAAAAAAGTAGAA-----------CAATTTACTCCTGTTCTTTCTTCAAAAGCAAGAAAAGGAGTAAATTT-------ATTAGACTGGACTAATAAAATAAAAGTCAACATTGATTTCCAT--TACTTGCATGAAGACACA-GGAAAACAGGTGACATATACTCCTTAAA--------------------------------------------------------------------------GACACATAAGATAAGAAGATGAAACC------------------------------------AGGTATG-------------TAATAAGTCTG------------TACAC------------AAAGCTATATTTGATACTTTCATAAAGAGAAGGATCTTAC--AACAGCATAGAGAAATAATTTAATGCCTTCCA---GAACAGAACTTGGGCTCTGTGCAGGTTTCCTATTCTATGGGGCTAGATCCCATGTCAACCCACAGAGAAGGAAGGCACCTCTGCCTCCTATCCGTTTATGCGGAAGTTTTCCTGGATTTCTGGTAGAATGTCACACACAAAGGCCAAGAGGTCATCCAGGACTTCATCCCTGTTCTGCTC-GAAGTAGTTCTAGAGGATGGTCTCCTTTTT----TCACCT----CACTGCTATAGCCGCCATGGGACCCCAGTGCCGCAGCTTCCTTTGTCTTGAACTCCCTTTCCCTCCGCAGGATATACTGCTCAATTTCAGCCTGGGCTTCTTCTTTGGCCTGCTTCAGCCTCAGGTT-CTTTCGCTTGCGGGTCTCAGACACCTTGGCAGC--CCGCTTCTCAACCTGCAGTAGCTGCTGGATGCCGTGCCACTGAGTCGCCATTGCAGAGGGGACTTTGGGTCAAGAGAGAACGGCCTAAGTCAATGGCTCAAACAC
s HiC_scaffold_1 16448832 1053 + 233722169 CATCTAGTAATTTTGGTTAAGAAAAACTAAGGCTGGCTCAAACAAGTA----GTACTCATTATTCTAATCTTTCTTTGGAATATACTACTTTAAAACTGCCTGCTGCTTAGGACAAGTTACAAATAGCTATTTACTACTTTTTCATAGATAAAACCTGACATTCAAGAAAGTATAAGGTGAAAAAAGTTATTTAatcccttcttttctttaaa-----------gaattgtTTTTTCCCCTActaaatt----caagaaagaaaaaatcaacacTGTTATACGTGCTGCTTGATTTAAAAGGTGTAGAAAACAGACAACATATACTCATTAAATTCCTAAGAAAtatgacataaaaagattaaacCTAAGAATCCCTAAGAAATAGGAATAAAACCTAAGTTCCTAAGAAAtatgacataaaaagattaaacCTAAGAATTCCtaagaaataggaataaaaatagaaataggaaTGAAACCTAAATTCCTAAGAAAtatgacataaaaagattaaactATTTATCCAGAAAAGCTAGGTATGCTACTCTC-CAAGGTGAAGGGACCTATTACAcaacata-agaaataatttaatgtgTTTAATAAGAATAGAA-TTCATCTTTGCTAAAGTTTCATATTCCATGAGAGCATCTACAATGCCAATCCATACAATGTA----CATTTCTTTCTCCTATCCATTTATTCAGTAGCTTTCATGGATTTCTGGCCAGATGTCACAGACAAAAGCCAAGTGGTTACCCAGGACATCTTTCCTGTTCTGCCAGGAAGCAGGTCTGGAGGATGGCCATCTTCTCCTGGTCCCCTTTTCCACTGCTGCAGCTGCCATGGAACTCTAGGGCTGCGGTTTCTTTGCCCTTGAACTCTTTGTCCCTCTGCAGATGATACTGCTCAAACTCAGCCCAAG---TTTCTTtgacctgcttcagcctctggttgttttcttttacaggCCTAGTCCACCTTCTCCTCGGCCACCTCTCAGCCTGCAGCAGCTGCTGGCCCCTGCGC--CTGGGTAGC-------ATGGCCACTGTGGCTC--------ACAGCCTAAGGGAGCAGCTAAAGCAC

a score=21596
s chr3            17230126 671 + 160039680 CATCTAATGATTTGGGTTAGGATATACTAACTGCAGCCAGAACAGGTATAT-CATATTCAGTGTCCTAA--ATTACCCAGGATAGAGTACTGAAAGGCTGACTGCTTCTTCATAGGAGTTACTAATAGCTATTT--------TTCATAGATAATGC--CTGACCTTTAAAAAAGTA------GAACAA----TTTACTCCTGTTCTTTCTTCAAAAGCAAGAAAAGGAGTAAATTTATTA-GACTGGA-CTAATAAAATAAAAGTCAACATTGATTTCCAT--TACTTG--CATGAAGACACAGGAAAACAGGTGACATATACTCCTTA-------AAGACACATAAGATAAGAAGATGAAACC--------AGGTATGTAATAAGTCTGTACACA-AAGCTATATTTGATACTTTCATAAAGAGAAGGATCTTACAACAGCATA-GAGAAATAATTTAATGCCTTCC---AGAACAGAACTTGGGCTCTGTGCAGGTTTCCTATTCTATGGGGCTAGATCCCATGTCAACCCACAGAGAAGGAAGGCACCTCTGCCTCCTATCCGTTTATGCGGAAGTTTTCCTGGATTTCTGGTAGAATGTCACACACAAAGGCCAAGAGGTCATCCAGGACTTCATCCCTGTTCTGCTCGAAGTAGTTCTAGAGGATGG------TCTCCT--------TTTTTCACCTCACTGCTATAGCCGCCATGGGACCCCAGTGCC
s HiC_scaffold_1 158881968 717 + 233722169 CAGCTAGTAATTTTGGTTAAAAAAACCTAAGTGCAGCCCAAGGAAGTATATTCATATTCACTGTTCTAATCCTTCCTCAGAATATACTACTTTaaggctggctgctgcttcacACAAGTTACAGATAACTATTTACTACTTTTTCATAGATAAAGCTCCTGACCTTGAAGAAAGTGTAAGGGAAACAAGTTATTTATTCCC-TCCTTTCTTTaaa-----gaattgttttttcttttttcctactaaatctaagaaagaaaaagtcaataCTGATATACATGTTGCTTGAGCTAAAAGGTACAGGAAAATAGACAACATATACTCATTACATTTCTAAGAAATATgaggtaa-aagatgaaatcttTGGAAAAGGTACAT-----GTTTGTCCAAAGAAGCAAGATAAGGTACTCTCCAAAGGAGAAAGGAACTATTATACAATGTAAGAAATAATTTAATGCATTTCTTAAGAGGAGAAATCAA-CTTTGCTAAAGCTTCATATTCCATGAGAGCCTCTGCAATGCCAATCCACGAAGTGGG----TACTTCTTTCTTTTATCCATTGATGCGGTAGTTTTCATGGATCTCTGGCCGGATGTCGCAGACGAAGGCCAGGAGGTTGTCCAGGACCTCCTCCCTGTTCTGCTGGAAGTAGTGCTGCAGGACAGCCATCTTCTCCTGGGTctccttctccacttcactgctgCAACTGCCATGGGATCCTAAGGCC

a score=12497
s chr3            17230690 289 + 160039680 GGCCAAGAGGTCATCCAGGACTT---CATCCCTGTTCTGCTCGAAGTAGTTCTAGAGGATGGTCTCCTT-----------TTTTCACCTCACTGCTATAGCC--GCCATGGGACCCCAGTGCCGCAGCTTCCTTTGTCTTGAACTCCCTTTCCCTCCGCAGGATATACTGCTCAATTTCAGCCTGGGCTTCTTCTTTGGCCTGCTTCAGCCTCAGGTTCTTTCGCTTGCGGGTCTCAGACA---CCTTGGCAGCCCGCTTCTCAACCTGCAGTAGCTGCTGGATGCCGTGCCACTGAGTCGCCATTGC
s HiC_scaffold_1 165700785 305 + 233722169 GGCCAAGCGGTTACCCAGGACTTACTTCTTCCTGTTCTGCTGGACGTGGGTCTGGAGCACAGCCATCGTGCTCTGGGTCGCCTCCGCTTCACTGCTGTGACTCTGTCCTGGGGTCCTACGGTGGCAGCTTCCTTGGCCCTGGATTCTTTCTCCCTCTGCAGGTGGCACTGTTCAATCTCAGCCTGAGCTGCTTC---GGTCTGCGTCAGCCTCTGGTTCTTTTGCCTGTGGGCCTTGGACCCTTCCTGGGCGGCCCACTTCTTGGCCTGCAGCAGCAGCTGGATCCCCCAACACTGACTGGCCATGGC

a score=7585
s chr3            17230793 104 + 160039680 TGCCGCAGCTTCCTTTGTCTTGAACTCCCTTTCCCTCCGCAGGATATACTGCTCAATTTCAGCCTGGGCTTCTTCTTTGGCCTGCTTCAGCCTCAGGTTCTTTC
s HiC_scaffold_1 158885710 104 + 233722169 TACCGCAGCTTCCTTAGCCTTGAACTCTTTCTCCCTCTGCAGGCGGTACTGTTCAATCTCAGCCTGAGCTTCTTCTTTGGCCTGCTTCAGTCTTCGGTTCTTTC

a score=71612
s chr3           17269436 1806 + 160039680 TGGATTCACTTAATTCAAGAAAATGGGGAC------------AGAAACCTTCCCCAACTCCAAAACCCATGATTAATTTGTTAAACACCCTGCAAAAGATATGGAAGGGCAACAAGCCTTTTAAAAAATCTAGAAATAGTGATGAGGGAGTTGAATGA-AAATTTTGCTTCAGAACAAGAATGCTAGAACATTGATTGCAAGAGGAGGCAAGAATGTTAAAGCTTTCTTTATAGACTACAATGCCAGAGTTTCAGTATCAGACAGCAGTGGCCCTGAGTGCATACTGAGTATCAGTGTTGATATTGAGACAATTGGAGAAATTCTGGGAAAAAAAAATCATCTCTACCTTGGAAGAGGGCCTGCAGTTGTCATCATCCACTGCAATCAGCCAGCTCCTGCTGGAATCTGAC---------TGCTTGAATTA-CAATA----AAGGAAGTGACTTTGACTGT---GAGTTGAGACTGTTGGTTCAT-CAAATCTGGCAGGAGAAATTATTGGAGTTAAAGGTGCTAAAATCAAAGAATTT-TGAGAAAACACTCAGACAACAATCAAGCTTTTCCAGGAGTGCTGTCCTCATTCTACTGACAGATTTGTTCTTATTGGAGGAAAACCTGATAGAATTGTAGAATGCATAAAGATCATCCATGACCTTATATCTGATTTTCCCATCAAAGGACATGTACAACCTTATGGATCCAACTTTTATGATGAAATCTATGATTATGGTGGTTTTACAATGATGTTTAATGACTGCTGAGGATGGCC-------------------TGTGACA------TTTCTCATG--------TGAGGAAGAAGTGGTTT-----------GAAACAATGCTTC---CTGG-------------TTGGCG---TGGGCATCCCGTGCCTCCTTCTAGAAGAGATCATGATTATATAAACCCCT-GTCAAGGACATCCTCCTGCTTCTTTTAGTGAAGGTGGCCAGGGTGGCAGTAGAGCCTGGAATCTTCCTCTTTCTCCACCACTATCACCAAGAGAAAGAGATGTAATGGCTAACGACAAAAGAGGAAGGGCTGGAGACTGCTATGATGGCATGTTTGGGCTCAGTGCTGATGAAATGGAGGGCTCTGCATTTGGCATGTGAAGCCCATCAGAATGGCAAATGGCTTATGAACCACAGGGAGGTTCTGGATATGATTGTTTCTATGGTTGTGGCTCATACCATGATCCTGGTGGACCTATTATTACTACACAAATGACTACTCCAAAAGATTTGGCTAGACATATCATTGGCAAAGGTGATCAGAAGATTAAGCACATTAATGATGAGTCTGGAGCATTGATCAAAATTGATGAACTTTTGGAAGG-----AAGATCGAATCCTTACCATTACAGGAGTATAGTACCAT--ACAGAACACACACCATTTGCTGCAGAACAGTGGGAAGCAGTATGTAGATGTTGAAAGAGTCTATTGCAAGGTATTTTCTTCTTTTTTATAGTGTGAAGCAGTATTCTGGAAAGATTTTCTAAGACTAGTAAAGAACTGAAGGAGTCTTATATCTTTGTTTGTTTGTTTGTTTAACTGCTTCTGTTTAAAAAGTCAACATTCCTCTACTTTGTAGGTGTTCTGCATTTGAGGTGTAGTGAAATCTT------------------------------------------------------------------------------------------------------------------------------------TGCTGTTCACCAGATGTAATGTTTTAGTTCTTTACAG----------------------------------------GCAATTTTGAA-------------------------------------GGGAGAAACTTCCCCCTTCCTGTGTAATTATTGTGAACACCTTGCTT--TGTGGTCACTG-TAACACTGAGGGGAAGGCACAGTGAGGAAAGT---AATTATTCACATGTTCCTGGCATTTGTTCAGAGCAGTGTGCAGAATATAATGCTCTTTTGTAATAAACATTTTGTGATTTTGAAAATAAATTCAGTAAATCTAaataa
s HiC_scaffold_1 96778591 2042 + 233722169 TGAGtccatttaataaaagaaaatggaaactgagcAGCGAAAGGAAGCCTTCCCCAATACTGAAAGC---GGTGAAGTTGGTAAATGTTCTACAGAAGATGTGGAAGAGGAGCAAGCATTT-AAAAGCTCTAGAAACA----TGAGAT-GTTGAGTTACAAGTTCTGCTTTAGAGCAGTAATGTTGAGGCAGTAATTGAAAAAGGATGCAAGAATATTAA--CTCTCCACTGAGACTACAAAGCTAGTGTTTCACTCCCAGAGAGCAGTAGTCCAGAGCACACACAGAGCATCAGTGCTGATACCGAAACTGTCGGAGATATTCTG----AAGACAACCATCCCTCTCTTGGAAAGGGGCCAGCAGTTGCCATCGCTCACTGGAAGCAGCTGGCTTGAGCTTGAATCTGATGCTGTGGCATGCTTAAGTTATCAACACTATAAAGAAGTGACTTTGACTTCTTCGAGTTGAGACTGTTAATTTATTCAAGTCTGGAAGGAGGAATTATTGGGATCAAAGGTACTAAAATCAAAGAACTTCTGAGAGAACACTCAGATGACAATCAAGCTCTTCTAGGAAGGCTGTCCTCATTCCACAGATAGAGTTGCTCTTATTGGAGGAAAGCCTGATAAGGTTGTAGAGTGCATAAAGATCATTCTTGACCTTATATCTGAGTCTCCCATCTAACAATGTGTGCAACCT--------CAACTTTTAGGATGAAACTTACAATTATGGTGGTTTTACCATGATGTTTGATAACTGCTGCAGATTTCCCATTCAGGGAAGAGGTGATTTTGACAGGCTGGGTGCCCATGCCTCCCTCTGGAAAAGAGGTGGTTTTGACAGGCTGGGTGCCCATGCCTCTCTCTGGAAAAGAGGTGATTTTGACAGGCTGGGTG-CCCATGCCTCCCTCTGGAAAAGATTCTGATCCCATGAGCCCCTCACTGGGGACCACCACTCCTTCCTCCTGGTTAAAGTGGTCAGGGTAGTAGCAGAGCTTGGAATCTTCCtcttccaccaccaccaccacctagAGGTGGCGATCTAATGGCCTATTATAGAGGAGAACGACCAGGCAACCACTATGTTGGCATGGTTTCTTTCAGTGCTGATGAAA-------CTATGCAATAGACACATGGAGCCCATCAGAAT-GTAAATGAC--ATGAACCACAGGGTGTCTCTGGATATGATTAT--------------------------TCTTGGTGGACCTATTATTACTATACAAGTAACTATTCCTAAAGATTTAGCTGGATCTATCATTGGCAAAGGTGGTCAGTGGATTAAATAAATCCATCATGAATTGGGGGCTTCTATCAAAACTGAAGAGTCTTTAGAAGGACCTAAAGAAGGGATCACTACCATTACA-AAACACAGGGCCAGAAACAGAATGCACAGTATTTGCTGCAGAATAGTGTGATGCACTCAGCAGA---TGAAGGATTCTAATGCAAGACAT----CTCTTTCTTGTAGTATGAAGCAGTATTATAGAAAGTTTTTCTAAGACTAGTACAGAACCAAAGGAGTcctgcatct-----------tttttttaattgcttctgTTTAAAAATCCAACTTTCCTCAGCTTCATAGGTGTTCTGCATTCAAGGTGTAGTGAAATCTTTGGACCACGTTTTATTCATGTGTCAATCTGCAGACCAGCGATGGCAAAAATATCATCACTTAACTGGAGTTTTAATTACatagaaacaaatccaaataaaaatattgtctATAAGACTTGAACTTGAACATCTGCTGTTCTCCAGATGTAACATTTCAATTCCTTTCAACAGGGTTGGGGCAGGGGTGGCACATGCAAAAACtaacattgaaattttaaaacagcagCAGAGTGAATGCattttttccattgttggtggtttAAAAATCTTTCTGCCCATGTAATTATTGTGAACACTTCACTTTGTGTGGTCACTGAAAACATTTGTGAGGTGGGACAAAGGGGAAAGTAACAATAGTCCACACATCGCTGGCATCTGTTCAAAGCA--GTGCAAAATGTAATGCTCTTTT-TAAGaagtgttttattgttttaaaaacaaatttagcaAGCCTTAAAAA

a score=6861
s chr3            17271106 131 + 160039680 ACTGAGGGGAAGGCACAGTGAGGAAAGTAATTAT---TCACATGTTCCTGGCATTTGTTCAGAGCAGTGTGCAGAATATAATGCTCTTTTGTAATAAACATTTTGTGATTTTGAAAATAAATTCAGTAAATCTA
s HiC_scaffold_1 108902332 131 + 233722169 attgtggGAAGGGAACTGAGAGGAAAGTAACAATAGTCCACATGTCCC-GGCATCTGTTCAGAGCTGTGTGCAGAATATAATGCTGTTTTGTA--AGCtgctttatgatttttaaaataaatttagtgaaCCTA

a score=64015
s chr3           17384298 3557 + 160039680 atggtagaggacatcaagaaggactttaataaatcacttaaagaaatacaggagaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttacagaaaaagagg----aaaaaacatac----aaacaggtgatagaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAG-CGAGGCAACACTAGAGATAGAAACCCTAGGAA--AGAAAT----CTGGAACCATAGATTTGAGCATCAGCAA---------CAGAATACAAGAGATGGAAGAGAGAATCTCA----GGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGA--TGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGAT---GCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGA-GGGAGAAACCAAAGTATTCCACGACAAAACCAAA-TTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCA-ATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAAT------------------CCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACA-------ACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATT---CAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTT-----GACCTTCTAA----ACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA-----GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGC---CACTATTACTCTGATAC----------------CTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC----AGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG----ACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGC-----ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAAT---ACCTAAACATGATAAAAG-CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaa-agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggag
s HiC_scaffold_1 65294954 3466 + 233722169 ATTGAAGAGGAAATCAA--AGCACAGTAG--AATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaA--------TAACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACCAAATAAAATCCAGGAGatcaaaaattacactgaaagcaTAGGCAGGAGAAATGACAAATGTGAGCACAGAGTACT-GAAATAGAAGATGGAG-CTGATGTTGGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatgga----gccaacagctgctagat------------gaaaTGCGG-----------AAGACTAAATTAAC---TGGAAGGAGTAAAAATCAGAACGAAG---TACAAAT----GGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAG--gtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACC--CAAAAAATTCT--CAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaaaaaaaaaaaaaaaaaaaaacctataaaaataaatacaccaaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTG------------AGACCCAGCAGTATGCTGTATATCAGAAAGTCATTTAATCCAAAAAA--------CATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGATTACCACAt-------attaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGACTTAGAAGATCTGATA------TATACAATTATATTGAAGAACTTCAATACCACACTGACACAAA----CATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGAACATTCTAACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaagg--taagacCTAAATC-------TTAGAAATTAGGA-------ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAA---TAAGATATAAAGACCCTGGAATAATACAGTCACAG-----CCAATGAATTA-----AACCATAAATAAGAACATCTATGAACAAATATAAACCCA-GACTA----CGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAG--CAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGtca---cacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAATACAGAAGGATTCCTTTTAcaaaagggaagggg

a score=100495
s chr3           17384300 4836 + 160039680 [encoded data, 4982 characters]
s HiC_scaffold_1 64792845 4737 + 233722169 [encoded data, 4982 characters]

a score=9685
s chr3           17384384 709 + 160039680 aaaacaggaaaacacaatcaaacaggtagaagtcc-ttacagaaaaagaggaaaaaacatacaaacaggtgatagaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGCGAGGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACA-ATCAAAGAAAATGGAAAATGCA-AAAAGATCCTAACTCAAAA----TATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCC
s HiC_scaffold_1 87508822 669 + 233722169 AAAGCAGAAACACATAAGCAGTTTTACAAGATTCTATTAAAGAAGTAAAggattttactaataaaatgctGGATGAACTTaaggaagaaacaataaa--tagTTAAAGAATTAGAcattatgaaaagaaagcaaacaga---aatacagaatgtGAAGAATTCAGTAGAAAGTATGGTGAGCACA---TTCAGC--CAGTATCAGGACAGACAGCATGGAAAAA----------------------CCGAAGACAAGATCGATGTAATAGATCA--TAAACTGAATGATGTTTGAAAAATGATAACAGGAAAGCTATATCCAGGAGCTGCTAGATGGCTCACAAAAACCCCACACCAGATTTATaggcataaaagaaaaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC

a score=83480
s chr3           17384445 4550 + 160039680 [encoded data, 4804 characters]
s HiC_scaffold_1 71797411 4481 + 233722169 [encoded data, 4804 characters]

a score=23638
s chr3           17384496 2706 + 160039680 GACACAATAAAGAAAACTCAAAGCGAGGCAACA---CTAGAGATAGAAACCCTAGGAA---------AGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAA------CGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCT--TCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATG---CATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT--AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAG-AGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA-----ATAACAGAAAAA-AACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACA--GAATGCCACCTTTAACAACTAAAA-TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAA-ACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACAT-----TCACTAAAGAAACTTTAGT--AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGG--ATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATG--GAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAA--AGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATA-CTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAG-------GATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC------CAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCG--------------------------------------------------------------------------------------------AATCCAAG-----------------------------------------------------------------------------------------------AACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAG--ATCAGGAATTCAAGGCCA
s HiC_scaffold_1 89593996 2654 + 233722169 GATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaaga----aaagataaacg-gGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCAtggaaaaag-------------------aactaaaaat-----gaaagattaaga-ataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACTAAAGCAT-----AAGCATCTATCCATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCTCATTTAAAGGCATTTG----CTTC----TCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAACTCATGACAAGTA--------------AGCCAGCattccagaaaatatttaaatatcacaaaGACAATGAGTATAAGACCATGTAAAGTA---TAAatttaattggaa--------------------aaataaagacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAA-TCTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGATCT-----GGAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaatta-aaacaaaaatctttaagt--GACAAAGAATGCCACTACAC-ATTGTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGG-------AACACAAATGCCTGCACATGttatttcataaaacaatttCACTTGAAAAGACAAA---CACATC------CCCAAAAATATAGTAGGGGACTTCAACA--CTATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG--ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT----------------------------TTTAAA---------------------GTTCTATTGCATCACAatggaatgaaacta------------gaaattattaggaaaaaaattacatgaatatGCTGAAATTGAG---------TTAAAATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTAC----AAAAGCAAGAGTGGTTCCCAAAAAATAACCTAATGGTa---ctaaag-----agaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat--------taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=17259
s chr3           17384655 1164 + 160039680 AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAA--GACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA--TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA--ACCAAATTCACGCATTATCTCTCCACG--AATCCAGCCCTTCAAAGGATAATAACAGAAAA------AAACCAATACAAGAACGCGAACAACGC--------CCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAC-CTTTAACAACTAA-----------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGA-----------------------ACTCT-------CAATT-CTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGA
s HiC_scaffold_1 67576299 1162 + 233722169 AGACAAAATAGTGAATAacaataaag---aactcaaagaagctaagaagaaaaatagacaataaGAAAAGACTAtgca-acagctgctag------atgatagCACAGATG---AATTCA---------CTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagtttaaaatacaagtaactgacatttataaaacattgaaCAATTATGAT--AAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTT---GGATGATATATGAGTGCTAAATCAGCTCT---AaggaaaatacttaagaatattctcaacagaaacaataagtcagacacagctaaaatcacagaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccgg--aaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaa

a score=84633
s chr3           17384667 4378 + 160039680 [encoded data, 4541 characters]
s HiC_scaffold_1 91695044 4298 + 233722169 [encoded data, 4541 characters]

a score=4591
s chr3            17384689 358 + 160039680 AAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAA-----------------------------------------------------------AATTATTGA----------------------------------------------------------------------------------------------------------AGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACA-TACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA---------TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAG-CCAGAAGAGC
s HiC_scaffold_1 139027905 529 + 233722169 AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAATCAGGGATAGGGCCTTGGCTCAGGGTTAAAGCTCCTGTGTAGCACTGTAAGGGCCAGGGTTCAATTCTTAGCAAAGGTAAGAGGGAGGAGGGATGCAGGGAAGGAGGgatgggaaaggaggaggagaagaaaaggaggaaggaaaggatgggtggatgggttCTGTAAAACAACACCAGAAAACTTCCCGAACCTTGGGAA--AGATACAGACATCCAGTACAGGAGGCATTTAGAACCTCAAATAAGCATGACCAGAAAAAACTCTCCCCACATCACTTTACAGTTAAAATGTCAAGAGTACAGAATAAGGGGAAGAGTCCTGGAAAATCCAGGACAGCAACAGCAAA---TCACTTGTGCTATGACAGGGCACCTATCAGAGTAACTACAGGGTCCCCTGCAGAGACTCTTAATGACCAGGAGGGC

a score=30192
s chr3            17384768 2468 + 160039680 ACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAAT-AACAGAAAAA--AACCAATACAAGAACGCGAACAACGCCCTAGAA---AAAACAA-----------------GAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGA--AACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCA-----------------------------------------------------------------------------------------------------TCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGA--AACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG----CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGG-ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGA----AGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG---ACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGAT--CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA----TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAA
s HiC_scaffold_1 116834065 2369 + 233722169 ATTCAAAGGTC-ATAAAACATATTCAC-----TTAT--AAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaaga-aaaatacaaaaagttgtTACATAAAAAGAGCAG------CAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATACAATAGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaatt--------aaacaaaaggaaaaaaaacaaaagaat----tggcAT-TGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAATACT-GAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagat------taatAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGA--ACAACAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCA-------CAGAACAAAAAC---------------------------------TGCTGTACATATAAGG-------------------------------------AAAAACATATCA------ATACAATTACAGTGAGAAA-TTCAATAACCTACTCTCAAAACTAG-CAggtcaacaagacaaaaaattagca-----aaactTATCAGTTAAACAATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAAA---------ACATG---ATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAAC-----AGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgatttttaaaaaccctg---------------------------cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=27632
s chr3            17384772 1662 + 160039680 AAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCT----AAAGAATGAGATGCA----------TATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAA-----AACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAA-----AAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACA---TTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTG--ATGAA--ACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAG---AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291805 1557 + 233722169 AATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgcAAATAAATGATATACAGGGACtggatttaaaatgcaaaataagcaTATAG------------------CCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTA-----CTGCTAAATCAGTTTTGCAAA----ACTTACTGAGTTTTGCAAAACTTACTCAGGAGAGC----------------ATGAAAAGGAGTAAATCTT--------ATTAAAAGA-----GTCAATAAATCAGAATCAAAC----AATCAATGAAATAACAGGGAGCAATACATACCATTCC-----------------AACTGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAG-CTACA---ATTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTCACAAACAGGCTAtctaaaaaatcagcaaagaaaca-------attgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGTAAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACG-----------------GTTAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=54872
s chr3            17384773 2822 + 160039680 AAGGTCCAGCAAACATCTTCAACAAAATTA-------TTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-----------------GAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACC------AAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAA--------GGATAATAACAGAAAAAAACCAATACAAGAACGCGAACAAC----GCCCTAGAAAAAACAAGAAGGTAATCCCTCAA-CAAACCTAAAAGAAGACAGCCACAAG---AACAGAATGCCACCTTTAACAACTAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCA-AATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACATACCACTTTCACCAA-TGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGC--------TAGACTCACTAAAGGGCACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA-AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 128206407 2921 + 233722169 AGGATATAAAAAACCTTGTTAACAGGTTTACTTTTGTTTacaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtc-aactccaattagccatgattaaaacaaagaaacaagaagagaaaaaacaccTTACACTGAGGCATATAATTGTCAggattccaaaaattcaacataggaaaataacattaaaaagtattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGGAAAggttgcagtgaagtatttcaagccctgaaagaacaTACCCCCCAGCACAGGTTGATATAATCTGtgaaactttccttcaaaattggtggagaaacaagatacttccatgacaaagaacacctggttgaaattcatga---------ccaccaagccaacactCCAAAAACATTCTGAAGACTAATATACAAAGA---GAACAAAGACTCCAATTTCATGAGCCCCAAGAGA--------TTTAATCCATcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGAGAAATTAGATGACAGAAATAAGTTAACACACATCCTTCATAATCACCACTGTTAGtggactcaattcaccaatcaaaagaaacagattggcagaatggctCAGGAAACAAGATCCAGggttggagatacagctcagtggcacagcgcctactTAGCAAGATCAAGCTCATTAGTTCcttgcccagtaccaaaaacaaaagaaaagagaaacaagatccaacaatatgcggCATACAAGAAATATGTTTAACATGGAAAGATACTTATACATTAACAGTCAAAGTgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatt-tgcagtcCAACTGgattcaagccaaaactgatcaagcCA--CAAAGCAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataacaatcataaatatgtatgcccCCCAGGACCAGAGCAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTACTGCCACAAAATGGGCAGATCAACTAGACGACAAATCAGAAAAAGA---ACTGAGTCAAACTT------TTGAACACATGGACTTAGTAGTTGTCTACAGAGTTTTCCGCCCCACCActtcataatacacattcttctccaaTCCTcaagttttgttttccaaaataacCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaagaaactgaaatcattCCATGCATATTAGCAGACCCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAATGTCC-TAcgaatatggaaattaaataacatccttgtgaacaaccagtggatcacagataaaattaaagaacaaattagcaAGTTTCTACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccatacagagaatgaatgaattaaagagGTAGTTCTT--GGAAGATGAAGTAAAACAGACAACCTCTTAGCAAacattgtaaaattttaaaaaggaa-----acaaagtcttagattcatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATCCCTATGTC-ATATGAATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAATGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgactAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGAACTACCTAATGCTGCCACTCCTCAAACTCTAGTGAAGTCGAAAGGTAATCAGTACTC--CCTaagtcatccctggaagcaagcattac-ctgtTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAATCTACCTAATGAGCATAGACAGAAGAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACCAGgtaggattcatcctagggatgcagggaGAGCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAACCAAGGATAAAAACCACTCAATCATCTCATTAAGCACAGAAAAATCATCAGTTAAATGCCAACACCCCTTCAAGAGAAAAACTGTACAGAATATCCAACTATATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatccaTTTTAGTAGCATAGCTGGGTACGAAATCAACACACAAATATCAACAGCATGCCTATACAAATGtaacaaactcagtgagagagaaattaaggaaac

a score=79503
s chr3            17384783 3960 + 160039680 [encoded data, 4338 characters]
s HiC_scaffold_1 135385634 4029 + 233722169 [encoded data, 4338 characters]

a score=50871
s chr3           17384791 4026 + 160039680 [encoded data, 4481 characters]
s HiC_scaffold_1 55842561 4139 + 233722169 [encoded data, 4481 characters]

a score=10420
s chr3            17384797 768 + 160039680 AAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT-TATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTA----TCATAGAGGGAGAAACCAAAGTA-TTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA--------AAAAAACCAATACAAGAACG-CGAACAACGCCCTAGAAAAAA-----CAAGAAGGTAATCCCTCAACAAACCTAA-AAGAAGA------------CAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCC--TAATATCT
s HiC_scaffold_1 129057714 743 + 233722169 AAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATAGAAAAAAACCCTGAAGTCC------AACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtg-----aaataaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGT------TGAGTTAAGttaagaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAA-TGGTT--TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta------aaattaAGACtcaaaaacagtattccatgcaacatgaACCTAAAAATAAGTAGGAGTTGAcatacagtgatacct

a score=38311
s chr3            17384806 2925 + 160039680 AAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACT--AAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC------AATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAA-----CCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACC---AATACAAGAACGCGAACAACGCC-------------------CTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT---CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAAC-----------AAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAAT-AGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCT---TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA---AAAAGGAAGCAAATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGG---TACCAAAGTTGAATCAGGATCAAGTTGACCT-TCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG-----AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACA---AACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTC-TGGAAAGATCAGGAA----------------TTCAAGGCCAAT-------ACCTAAACATGATAAAAGCAATCT--ACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA--ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaaga------------tctcagaagatggaaagat
s HiC_scaffold_1 171883955 2733 + 233722169 aaaaaaactttccaaatatggaGAAAGAGTCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAAGTATGAAGTAATGAGATACC-------TTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc-----aaactagcactccaa-----aatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCAAATGGTCCAACCAAATGACTACAGCATAC---AGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagaga---aaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCC-AAATAGAAAACATACTCATCTCATAAAGGCATACTTAA-GTATTCATAAGGAgtcaaaattattccatgcatac-aTCAGGTCATAGTGCA-TAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACA-CAAGAACTTTGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaac-----agtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaa-----------------caataaacaaa--caagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGTTCT----CAGATAACAGAAATTATCAAAAATGAAccaaggccaga--gatttagctcagcagccc---------------------agcaggtgtga--agtc---------------------------atgagttca---caGAGCGCagtaaatcatt--aaaaagatcatacatcaaaACCAACAAGGGTTTCTCCCAGGGATGATTCAACAgacaaattaataaatgcaatGTGTCA--------------------------CATAGACAGA---AGCAAAAATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAA-----ATGCAACAATTCATGGTAAAagtct-------------gaagaaaataggtatagaatgATCTTTTCTGA----------------------------AGCTGGT----------AAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgggaaaaactgaaagctt-tccctctaaagcCAGGAACACagccaagcgtggt--ggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataa----aataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaaggg-tacgtacaagaaaa-aagaaataaaattatcattattttcagataacaTGAGCGTCTACAT-AGAAAACCAAAAAATTCCA---------CTCCAAAATTAATATCCA---------AAGCAGCAGGATACGAAATCAA--CATACAAG-CATTAATGTTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaaca----ggaaCTAATCT----AAGACAGTGAAAGTCCTTTACAATGAAAACTCCTA-----TGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=106543
s chr3            17384809 4329 + 160039680 [encoded data, 4852 characters]
s HiC_scaffold_1 195237049 4703 + 233722169 [encoded data, 4852 characters]

a score=30161
s chr3            17384814 1970 + 160039680 TTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAA------------AACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAA--------CAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCA-----------ACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAG---ATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTA--TGAA-GAAACAAGCAGGAGTAGCCATCCTAATATC----------------------TGATAAGA--------------------------------------TTGACTTCC-----------------------AAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTA----GTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACA-TACCACTTTCACCAATGGACAGATCA--TGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCT----------CAACAGATTCAAAAATA---------------------------------------------------------------------------------------------TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-AGAAAAAACGG----------GAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-----------CAAATTCACCCAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT----CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881341 2293 + 233722169 ttcccaagtcaaaaaaaaaaaaaaaaaggaaaga---aagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-GCCATATTGTTCTCTAAGTACCAGGAATTCATCACAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTC---CTtcagaaatgaataaag-aaagtatttccatgacaaggaacacatctaaaaaaaattcatga---------ccatcataacagcatttaaaaaattctcaagtgTAAcctagaaagaaat------aatgaagccAGCAATACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaaggaaaaggaaaaaataaggagATCAGCAGAAGGACTGTAA----TGGgatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA------AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggtatagacatgaaaaaatcaga-taaaca------ccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAGACTCAAAAcc------atacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=66181
s chr3            17384847 4275 + 160039680 [encoded data, 4582 characters]
s HiC_scaffold_1 189257286 4392 + 233722169 [encoded data, 4582 characters]

a score=65480
s chr3            17384858 3337 + 160039680 CTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTG-CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAG-------------------------GATAATAACAGAAAAAAACCAATA-----------------CAAGAACGCGAACAACGCCCTAGAAAAAACAAG------AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTT----------AACAACTAA--------------------AATAACAGGAAGCAACAAT-------------------------------------------------TACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTC---CAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAAT-------------------------TCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAA----------------CAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAG------CAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTT-AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaa---------------gtattagccagagcaattcga----------caacaaaagg---------------------agatcaaggg---------------------------------------------------gatacaaattggaaaa------------------gaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat-----------------------------------------------------------------------------------------------------------------------------------taactcaaacaa----------------------------gtca---------------------------------------------------------------atagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcgg-cgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgca--------aattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtac-----------------------------------tggtat-------------agagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaa---------gacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttg
s HiC_scaffold_1 133193526 3792 + 233722169 CCATATAGCTCCAgttagccatgat---aaaaaaattacagcaaaaCATGTAAAAGTCATGATTCCAGAAACTCAAAATAAGATCAtaat--taaaagttgttagagaaaagaaacaaatcacctacaaaggaaagcccatcagaatcacagctaacTTCTCACAAG---CCCTCAAATT---AAGGacttgaagtaaaatatttaaagccctaaaggaaaacaacctttcaacccagattgatgtaacctataaaactatctttcaaaattgatggagaaataagatacttctatgaaaaGAATATCTGAGTAAATT-TTtggccaccaaaccagcactctaaaATGTTCTCACGCatgttctagaaagagataacaaagaatTACAACTCATAAGGCCaaggctttagctcagtggcccaagcacctacctggcaagtgcaaggtcatgagtttgatctctgct---accaaaaaaaagaaaaaaaaaaaaaaagaatacaactcCTTGAATcccaagacaatgaatgcaattggcaaggcaaacaaataaaaggaagaaaaaataagagagctaacaacagaaaaatatcatGACAATGACtgaataagtcaatacatatcagttataaccactaatgttaatgatctcaattcatcaatcaaaagaaaca--ttggcagaatggatcaagaagcaagatgcaacAATGTGCTGCATAAAGGAAACacattttacttaaaaaagaaatgcatagacA--------GAATCAAAGAGTGGGAAACAATAGTCCATGccacaagaacccagaaaaaagcagaagtagctattctatttgcagacaaagtggatttcatcCAAGTCAGAGT----AAGAGAGACAAAGGG---CACTACATCCTTATGAAAGa-------atctaagaggaagagataacatatatatatatatatatatatatatatatatatatatacagcaaATACTAATGCATCCAACtacatataaaaaatattaatggacacgaaaaatcaaataaacactaatacaattatattggGGTACTTC--CATACCTCCTGCCACAA---GTAGATCATCTAGACAAAAAGTTAACAATGTAATATTAGAACAGAACctaacttttgaacaaatggacttggtagatacctacagagtgttccaccctacaacatcagaatacacattcttctcagctacacacgGGATGTTCTGCAAAACTGTCCACATACTATCTCATAGAACATaactaagtaaatgaaaaggaattgaaatt-ccccatgcatattatcagaccatagtgcaacaaaattggaaattgatagtaaaagaaaccaaaagaactTCATAAACTGATGGAAATTAAAAGTggcatattaaaaataatatccttctgaacaaccagtgggtcacagatgaaattaaagacaacattag----TTTCTACAagtaaatgataatgccagtgcAACATATCAGGACTTATGGGAcagaatgaaagcagtccta-gagTGAAATTTTTAGCGGTGAGCACTCATGTCACAAAAAATGAGCAagctcaaacaaaacaaaacactttaatGTTGCACCTTGAGCttctagaaagaaaagaa-caagtcaagccca---------acaaaagaaaattataaagatcagagcaaaaattaatgcaactgagactaagaaaacaatacaaagaatcaatgaatcaaagagtt----ctttgaaagattaaataaaattgataaaacccttagctaaccttatcaaaaaacgAAAGATGCAAATcc----------atttaggaatgaaaaagacGAAATCACATCAGATCCTGCAGGAATCCAGAAGACCATCTATCCTTACTTCaagaacctgtactctaataagatgtaaaatgcagaagaaatggatagattcctagatatatatgagttg----agctaaatcaagaagatataaaatttctaaataaaccaatatcagtcaatgaaattgaagatgtaattaaaaaaccTATCAAAAAATCAAAGCCCAGGCTCTGATAgatttcactgctgaattcta-caaaaatttgGAGAGGACCTAATACcacttct---taaactctttaatgaaactgaaagggaagcactattcccaaattcattcctggaagcaagaattaccctgataccaaaagcagacaaagacccaactgagaaaaaaatcctaCAGGCCAatt--------gaacataaatgcaaaattcctcaataataT-ATTGCAAACAGAATGTaacaattcatcaagaagattatttaTCATGACCAAATAGGACTCATCCCAGGGGtgca------------tatac--aaatcaataaatgtaatacaccatattaacagagccaaggacaaaaatcatatgataatCTCAATCAATGCAGAAAAAGTGTTTGACAACGTCTGACACCCATTCATGGTAAAacccctacagaaaatcagaatacatggtctttatctgaAACTGAT-AAAGCCATCTACTATACATCAACAGCCAACATcctaataaatggacaaaaactgaaagctttcactctaaaatca-ggacaagataaggatgtccactg--tcacttcTCATTCCGTAAGGTTCTGGAAACAGTGTGAGCAACTATATaagagagaagaataaaagaaataaatgtaaaaaaaggaagaagtggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccgataaaaattaaaaaaaaataaaaataaaaaaaggaagaagttaaattatcatgatttgTAGATGATATGATGCTCTACACAGAAGCAACTAAAAATTATACCAAAAGACTTCCAGATTTCATAATCAAGTTCAGCAGTGttactggatacaaagtcaacattcaaaaatcacttacatttaagtgtgtaagatagataatcatactactaagtttttgttggatcatgagCAGAATGGTTTTGCACTATCATTGTTTGACtgcccactttttatgctttgattttgtaacttgaacaactatttctaagatgacaatatgcaatgtatcaactagtgatttcttagtgttattattttttttgatattctgtattatttctacccttttctgtaTAGCCTTCAGGTACAagaataacaaactcacagagagagtaAGTATGAAA-------CTTTCACAATTATATCaagaagaatgaaatacttaggaaatcaatctaatgaaggacgAAAAGGGCCCCTATGTGGAAAACTATAGCCCTCTGAAAAAGaggattgaagaggatattagaaaatagaaaggtatcccttgctcttgggtaggaagaaccaatatagtgagaATGGCCATAATTCCAACATTGGTATACAGGTTTAATGCTATCCTGGACAAAATTCCAACAgtatatcttacagaattagagagaG-AATTTTCAGAATTATCAGTTCATTTGGatccaaaagagacctagaatagcaaaggcaattctgagcaacagaGATAAAA------CAGGGAGCATCACAAgccctcacttgaaattatactaaaaaccTAGTATGTTAAAAATAGCatagtaccacaaaataaaacaaaacataacaaaccaaacaaacaatattaaaaaaaaaaaaaaaaacagatctgaggaccAGTGGTATAGATTAGAAGCTGCAGAAGCAACTCCAAAC---------------ATACTTACCAAGGAAGGTATAAACACCT--TTGACAAAGGTGTTTATTGAAAGCCTATTcaataa--aatgctgaaaaaactggatttctacatgctgaagatttaAAATTAGACC-TACATCTCTTGTTG

a score=6765
s chr3            17384868 597 + 160039680 CCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAG-AACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAA----CTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAA---------CAGAAAAAAAC-------CAATACAAGAACGCGAACAACGCCCTAGAAAAAACA-------AGAAGGTAATCCCTCAACAAACCTAAAAGAAG-----ACAGCCACAAGAACAGAAT-GCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT
s HiC_scaffold_1 229214006 588 + 233722169 CCAAATATTTATAGTCAGAAAAAAGGTTTATCTTCAGCACATTCTTGGCAAAATCCTAGGAGT-CCAACAAAGGACAGGATCTTAAAAG-ATTTAGGGAATAGTAACAGCTCATTTATAAAGATAAACCTATTAGAATTACAGCACATTTCCAAAGAGAAACCATAATGGCCAGAAGGGCTTGCAGAGAAGTGTTTTAAaccctaagagaaaaaaaaattacaaatcacATTGATATTCTCTGCAAAGatatctttcaa-------------------------atttgatgaCAA---CAAACACATTAGACAATTTAggaccaaaccagcactccaaaacaTTCTGAAGGGTGTCTTAGAGAAGGACAGGCTTGCAATGCCAAAACG----------TTTAGTGAAATGAATGTGTCAGATAGGGGTCAGTTAAGGTGACTGCATGAAGCAGAAGGAGCC----GAACAGACTCAGCACCAGGTACCAGTGCAGTGACAGGGCTCAGTCAACACATTGCAGGACTAAGTCTCAAAATGAATGGTCCCAACTCCCCACTCACAAGACACGGATCAGTATACTCAACCAAAACCCAAAACTTAACAATGTGTTGAATGCAAGAACTACATTT

a score=85351
s chr3            17384880 3628 + 160039680 GACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAA-----AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTG----------GGAGACTTCAACATACCAC-TTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA--------TG-AAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGG-----ATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-------CATCTAAAAGCTCTAGAAAAAAAGG-------AAGC---AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGT--TCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatata-agtgaccctaaaaattccaacagagaactcctaaacctga-taaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataa---aaactgcatggtactggtata-gagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa-cagca----atggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtg
s HiC_scaffold_1 218598417 3569 + 233722169 gaccaaaaaaaaaa--------aaaaaaaaactcccagaAATTCAGA--------ATAACAACACATTATTAAAacctgtaagagaaaagaaacagaatacctacaaagaaaagtccaCGAAAATCACATAAGAATTCTCTACACAAATCCTCAAAtgaagaagagcttgaa-----gtactTCAAGTCTTGaatgaaaacaacttccaacccagattgatgtagcctacaaaactatctttgacaactgatggagaaatgaaacacatacatgacaaagaacaactaaagaaattcatgtctatcAAGTCAAACCTCCAAAGAGTAcggaaagatattctagacagatacaaaaatgaccacaattccaagaacaacatcaGAAAAAAACCACCCACAAAgcagagcaagcaattaaacagaggaaacAACAGGGAACCAACAGCAAAAAATAACGTGACAAAGATAACCCAAtacatatcacttataaccattaatgtaaatggcctgcattcaccaatcaaaagaaatatattgGCATAATGAACCCAGAAACAATATCTAGCAATAGGctgaatacaagaaacacatttaacttaaaaaagaaactcatagactgaaagtgaaaggacagaaaataataCTCTATGCAACAGATAGGTACCCTGAAGacagcaggggtagctattctatttgcagacaatgtaaacttcaaaccaagaaagatcaaaagagataatgaaTGTTATTATACACTTACTAGgtg-aaaattcaagagaaagagataaaaatcataaatatatatgtaccaaatatgggagaactaaactatgtaagacaaatgtcaacagacatgaaaaaaa-----------taagcaataacaatgaCTATAACAGGGGGACTTTAA--TACCACATTGTAACAatagatagatcaattagacaaaaaaaaaaaaaaacagcaaagaagc-aacagaattgaaccaaacttgtaaataaatggacttagtaaactTTTAAAGAGTATttcaccataaaaaaaaaaatcttaattcacatgcttctcagttgcacatgggccattgtctaaaacagaccatatactaggccatagaacatgcttaggtaaatgcaaaggaattaaagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCA------GGAAAACAGCACATGC--ACAAATATACAACGTAATGTGCATCTGAA--CTTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaa-agaaagaaaagactcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaaga---aggta------taaaaagtTTGAAtaacattaatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaat-aaatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaa-aaagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaatacaattaacatatcttacagatctagaaaaaaacat-------tccctttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaaagtc----tttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtca-----aaatggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTCA-----ATAGGGGTAGACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttcaa-----agaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=32805
s chr3           17384923 2425 + 160039680 CAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATT-CACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAAC----CTAAAAGAAGAC--------AGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTA---------------CACAAACAAGACCCA------------------------------------------ACATTT----------------------------------------------TGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAG-TCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGG-ACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA--GCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAAAGGGCACA------GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT-----------------GAAGAAATCCAAAAC-----------ACCATCAGATCCTTC----------------------------------TACAAAAGGCTAT-----ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAA---AGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA----GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaag
s HiC_scaffold_1 77435158 2503 + 233722169 caaaaattcaaaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaat-taatgaaaaataaagacctCCCTTGATAAGTGTAAATTATAGACATT-TATGACCCCTAATCCAGCATTGCAGAAAATACTTAAGTTAATcttaaacacagataaaaaagagaataacaat-tatgagaccaaagaaagaaatgtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCA-AATagtagaa----------aaaaaacaaaatgataggaattagTACATACCTTCCACAACTATCA--TAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAA-AGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG---ACAG--------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAATATAC-ACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaaagaaaa------------------cacatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaa----aaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaa--------atattttaaaaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTGTTA----ATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=45728
s chr3           17384965 2639 + 160039680 AAAAAGGTCAAGTAAC---ATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATA----------------ACAGAAAAAAACCA----ATACA----AGAACGC-GAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAA----CCTAA--------------AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGA-----TCTTCAATAACAAAAT---AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGC---CTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCAC-AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC----AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCA---------------------------------------------------------AGAACACA--------------------------------------------------TTAAAGCAATCATCCATC------------------------------------------------------------------------------CTGACCAAGTA---------------------------------------------------------------------------------------------------------------------------------GGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacaccctt
s HiC_scaffold_1 66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatat-aaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT--GGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAGCTAAAAACACAGAACAAC----TAGTGAAATCAGTGAATaaa--catcaacaaagaaacataaggaaaagaaaaacaaaggatacaccaacataaaaagaaagc----------------aatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagata--------------atCAAAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACAC--------AAGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAAT--AAACACTAACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagtt-cgAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAAA-----GAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaa-taaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaaga----aaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=49013
s chr3            17385014 3751 + 160039680 TTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA---------ACCAAATTCACGCATTATCTCTCCACGA-----------ATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTT---TTCCT----TAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACT---TCCAAACCAAAG-TCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACC--TTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAA-CACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCA---CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACT---CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTC--CCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGA--TGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG---------ATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA--TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAA-GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatata-aaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgt----atgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatg--------aacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa---cagcaatggcttgtgct------------gtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatct-ttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtggga
s HiC_scaffold_1 228955059 3395 + 233722169 tttattttcaaaaattctgaCCAATACTAAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACA-ATCATCAAACTAGGACTACAAAACATATTCAATCCTACACAG-----CAAGAGGGAAAAACTATGAAAAAGGATAGACTCAATAATTAATCTAAATGGGAGAGTTGTttcacaagaga---gaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaatt--aaaatgataT-CTATGTAATAAGTGTGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATACTCCTC----------AAATAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT--ACC-CATATTGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGGGAAA--TTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAGG-TCAATGAAAAAAAG------TTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAGATGATAATAGGCCAT---GAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTTCCAAAAGCAatacaataaatcaataaa--------------tgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgt-aaagagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCC-ACAGAAGACTCTCAGAACTAATAGATAAATTCAGCCAAGTG---GAATATACaaattaatacacaaaaatcaagaacattacccaaagtgatatatatata---------------------------------cttaataa----aaataaattgaaatatc--------------------------aaagtttttttttcataacTAGAAAGTCAAGTCT-------------------AAAATTCCTAGAGA-----------------------------------------------------------ACCAAAAGAGACCCA-----------------------------------------------------GAGTAGC------CAAAGCTATCCTgagcaacaagaaaacaaaca-aacaacaac----------aacaaaaaaaca---ggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACATAGGGGAAA-CACAGGACCCATAGGCGCA-GGGAAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaagaaAA-----TAATGAGCCAA------CTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACT---CAACAGGTGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=59112
s chr3           17385086 4052 + 160039680 [encoded data, 4684 characters]
s HiC_scaffold_1 33891657 4431 + 233722169 [encoded data, 4684 characters]

a score=42585
s chr3            17385097 2632 + 160039680 TACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCAC-GACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCA--ATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAA---------TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGA-AAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA-AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTA------GTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAA------------ACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGC---CAACATTCACATGGAAACTGAACAACA----CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-------------------------------------------GACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCTTT---------GGGACACAAT---------------------------------------------------------GAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCA-AATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATC-CTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTA---ATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccc-taaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagc--cacaaataat--ataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctga----agaaagaaattaaagaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAAATTTTGAAGACCACTAAGTGAGCACTACAAAAG----TACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAACATCAAAGAGACTAAAGGAATG-AATACATTAATCA--TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCATCAATAACAGGTACAT------TGAAAATTagatgatggaaaacaatacttcatgcaa-tgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAATACTGCTGCACATAGAGGTCAGA---TAAACAGC----CACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCA-----------ACTGGACAAAACTAT-CAGCAAAGAATATGAGAGTTGAACTATACCTCTGAACAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaacca-tGGCAAAG-GAATCACAGAATTTTCTCAAC-----CATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatggataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca-gaaatatagca---------------ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAGT------------GGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACC-TTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=48974
s chr3            17385283 3213 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAG-TCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCA---AGAGGAACTCTCAATTCTGAATATC---TATGCT-----CCAAATACAAGA----GCAGCCACATTCAC-TAAAGAAACTTTAGTAAAGCTCAAAGCACACAT-TGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGAC-----AGATCATGGAAACAGAA--ACTAAACAGGGACACACTGAAACTAACAGA-----AGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA---AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACC--AGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTA----TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaa--catagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttac--ctatcctaaatcagataggggactaatatccaacatatataaagaa
s HiC_scaffold_1 216972207 2954 + 233722169 AAAGGAACCAGCAACAGGAACATAATGAAG------ACAATTTCAGAAATAGGTTG--ACATCTAC----CAGTAATATCTCTC----TAAATGGTGCAAAATCCCTAATCAAATGA----GATTGCTgttgtggctgaaaagataaagcTGTGTGGTATGCTCTAAACAAAAGACACAATTAATCCAAAAATACATTCATGCACTagaaatagaagaatgaaaaacaatattctatgcaacTAAAGCCTAAAAACAAGCAGGAATAGTTATCTTATTTTCACAAAAAGTGCATTT--AaactaaaactgatcagaagagggaaagaaaaacataGC-TTATTGGTTATGGCAAAATTCaacatatatatgttatatatgttttatatattatatatgttgtaTACCATATAtgatattttgcatatatatatatatatatatatatatatatatacacacacacacatataccccTCAGTcac------------------acataaaacaaatattactggACCTGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAa-tattagttatttatttattgaacaaGTGGAgctaatagatatctacagagtgttccattcaacaacaaca--acactcaTTCTTCTCAGTAGCCCAAAAAACTTTCTCCACAATAGACCATATATCACCCCACAAAGCATGGTT-AATAAATACAAGTATCTGCAGCTTAA------------ATCAGATTATAacgcaatgaaactagaaatcaagcAAAAAATCAGAGATATTATTCAAACAT----GAGgacatgaaataatacatttt--aataatcaGTCagccacagaagaaatcaagaaagaagttAGAAAGCTCCTGCAATCAAATGACAATACTGATATGGCGTAACATATCCTGTGG-ACACAGTGAAAAAAGCCGTAAGAGTGACTCTTACAGTTATGAATA--TTCATGTAGGAAAAAATAGAGCAATCCCAGACAAATAACCCAACGA----------GGTCCCAGATAAACAAGAA--CAATTCA------------AAGCTTctataagaaatgaaattaaaaggatgagATTGG--AAGTTATGATATTGAGaatga---aaaaatacaacaaattgaagatctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTTACCAGA---------------------------AAAAGTTGAAATTAAA--------------------TCTATCAAAGTCCTCAAGATCATTAACAACCTCTTTGAAAGTAAGTGCTGCATTAAATTGGAGAATCCAGATGAAATAGATAGATTtctagatatatatatacattgccAAAACgaaaccaagaaaatataaaagctgTGAATAATTCAATAACAGGCAataaaattgaagcagtaatgAAAACTT----------------------ACCTGATAGATTCATTGTTTAATCCTACAAGAACTTCAAGATGAATTTAACgccaatactttttaaattttttaatgaaaccaAAGAGGA--GTACTCT--TCAAATCATTTCTAGAAGATAGCACCACTTACCCTGATTCTAAAACCATTCTAACACCCAAGTAGGAAAGAAAACTACAGAGCAATCCTTTTAATGAACATGAATGCAAAAACTTCCAACAAGATTCTGGataaacaaat---------catcaaaaacattGTTTATCATAACCAAAATGGCTTTAGTCTAGTGATGTAATGGTGg-ccaacatatgcaaatcaataaatttaatagacaacg-aaacagaagcaaggacaaataTCATATGATCATCACAACAGA-----GAAAAATCTTTGAGAAG---TGAAACACATTCATAACAAAAACCCTG--AAGATCta---------------atctcaatctgataagagcCAATTCTGGTAAACCTTctgccaatatcatactaaaaggGGGAATGCTGAAAGAATTCCCTCTAAAATTGcaaagaagacaaggatgtccg----------aCAGTTTCTATTCAGTGTACTCAAAACATGAGCTAGAACAAT----CAAGagaagaagataaaaaagaaatgtgtgggaaagaaagaagtc---atgttactatttgcagatgactcgATCCTTTATCTGAAAGACTCCAAAAATTCCACT--AAGATTTTTAGAACTGATAATCATATTCAGCAGTACAGTAGGACACAAAGTTAACATACGAtaatcagtagcatttctgtgCACCAATAACATactcacagagaaggaa-------aaataataccattcacaacAGC----ACTGAGAAAAA----------GTAATACTTACAAATTA--------ACCTATCTAAAGAAAACTAC-AGCTTctgaa-aaagagattgaaaagaaTACCAGA-------------TCACTTTTTCCTAAATAAGCAGAACCTATATTGTTGAAAATAATCACACTTTCAAAActcatatataaatttaatttattcccAATAAAAATGGGagcagcattcctcacagaactagaaaaa--aatcctaaaattcatttggaaccagaagagatccagcatatcaaaagaaatcctGGTCAACAGAAGGAAATCAAAAGCCATCA-CACTCcagatttcattttatattgcaaagctacagtgataaaaacagtattctGTTGGCATAAAG-CAGGTATGTAGGTCAGTGAAACAGAG-AGAGGCCGCAGAAATGCCCCGAGGCACAttcagccatctgatctttgacaaagggaccaaaaaatTACACTGAAGAAAAGATAACCACTC--ACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGA--------------CTATCCCTCACCatgcagtaaaataaa----aagtagattaaatatctaaatattaaaacagaaatctgTAGTCCATTAGGAGATGAACTAGGTAAAA--CTCAAAGATACAGGACTAAGTAAGGATTTTCTGAGCAGAACCCAAgttacacaagaaataacattaagaatcaataaatgaggtTACATCAAATTC--AAAGCTCTTCACAGTAAGGAaaaccaccagcagagtgaagagtcaatgtacagaatgggaaaaattttatcCAGCTACTCC---CCAGACAGAGAACTATTGTTCACAATATGTAATGAA

a score=10377
s chr3           17385318 1149 + 160039680 AACAACTAAAATAACAGGAAGCAACAATTACTTTTCCT-----TAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA---GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACA--AGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATT-GCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTA-AACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCA---AAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAA--CAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAAT---AAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-----------AGAAAAAACGGGAGAGAGC-------ACATACTAGCAGCTTGA-----------CAACACATCTAAAAG-----CTCTAGAAA----AAAAGGAAG-CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC--GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT
s HiC_scaffold_1 20106840 1122 + 233722169 AACAATTAACAAAAT-GACAACAGTAAATTCTTTATCTATCAACAATTGCTTTAAATATCAGCATATTTAATTCTttaatcaaaaggaaaagagtggctaaatggata---aaaaagtatcCACACAAATACCACCTGCAAGAAATTCGTGTCATCTATAAAACATGTAGAC-TTACC---AGATGAAG-------------TATTTCATGCAaata--aagcaaaaggaaacagGGGAAGCT-TATTAGCTTCAGATAAAATGCACTTCCAAGC-AAAATGAT-AcaagaaactaagaaaatcaTTATAGAATGACTATAGAGACAATTCATCAAGAGGA-TGGAAAACTGTAAATATATAGGTACCCAACATTGTAGAATATGAACATGTA-------AATATTACTAGATCTGAAGAAAAGTAATAGCA----ATACAGTAACAGTAGGAGACTTCAATAGTCCACTTTTACCAATGGATAAATCATCTTTACAAAAAACACAATAAGGTAATTTTGGACGTGACCTAAAGTTTAGACCAAATGGGcctaatagacatatacaggatatTTCACCTAACAAAAGTaacatacacattcttttcaaattCCCATAAGTCTAACTCCAGTTAGATTG------TGTTCAACTACAAACCA---------AAATC----AAGATTTAAGTCATATGAAACATGTTTTCCAATCACAGTGAGATGTAACTAGGAATAAATAACAGGGGAAAAAAACTGGGAAAATCACGAATATCTGAAAAT----CAACACAATCCTGAAAAATCAATGTgtcaaagaacaaattaaaaggaaagaaa--aaaatcttgtcaCA----AGTGTAAATGGAAACACATCATGCGAATAC---TGGAATGCAGGAAAAGCATTTCTGAGAGAG---TTTATGGCAATAAAAATCTACACAGAAAAggccaggaaagaaagaagaaagcaaggtgaaaagaaaagaagaaggaagagaagatttCAAACTATCTAATATTATACCTTCAGGAAGTAGAAAAGGAAGTCAAGCTAAcaccaaagggg---------ggaaaaaaaggatgtTAGAGCAGATATAATTGAAACAGAACtcagaaa----atcaaatgaaatcaacAAACCTAAGCAGTGGAGATTctgaatagataaacaaaatttaaaagtc--taaTTAGACT

a score=5591
s chr3            17385329 296 + 160039680 TAACAGGAAGCAACA----ATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGA--AACAAGCAGGAGTAGCCA-TCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTC
s HiC_scaffold_1 185583326 281 + 233722169 tggcaggctgcagcagcccagTACGTGTCTAAAACAACTTTGAAGGTAAACATACTAAATGTCTCAATTAAAAGATACAGTCCTGCTGAATAGATACAAAAACAAGACTCAACAATATGCTGCCTTTAAGAAACTCACTTCACCAGTAAA--------------TAAAGTGAAAGACTGGAAAAAGATAGTACATGAAA-----ATGAAGACCAAAGAGCAGGAGTATCTATTTCTTGTGTGAGGCAATATAGACTT---AAGATGAActgtaaaaatagacaaaaaaagttgtcttagtttc

a score=35780
s chr3           17385348 2522 + 160039680 CTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA----AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCAT-TCTCATCAAAGGTAAAA--TCCTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCAT--------------------GGAAACAGA----------------------------AACTAA--------------------------------------------------------------------ACAGGGACACAC---------------------------TGAAACTAACAGAAGTGATGAAACA--------------------------AATGGATCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC--CACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagta---gctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattca
s HiC_scaffold_1 42973449 2236 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTT--ATTA---AATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagaca-GAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaaca------aaaccaaactaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgg----------------------------ggagaatcatca----------------caagtttgaggtcatctt------------------------------------------------------------------------------gGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAGAC--TTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTAAA-AATAC------TCcaggaatcaacctaatgaa-caggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaa-aatcaatactaaaacTCA

a score=81966
s chr3           17385362 3779 + 160039680 CTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAA--AATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTA-----AAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCAC--------------CTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTC---TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaata----gccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacaga-ttcaatgcaatccccattaaaattccaactcaattcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaac-----ccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatc--gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactg-ggaaaggatct--ttacctatcctaaatcagataggggactaatatccaacatatataaagaactc-aagaaggtggacctcagaaa----------atcaaataac---ccccttaaa-aaatggg----gctcagaa----------ctgaacaaagaattctcacct------------------------------gaggaataccg--------------------------------------------------------------------------------------aatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagcc---ccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgata
s HiC_scaffold_1 75496062 3772 + 233722169 ctctcaatgtgaatggtccTAATTCCCCaatgaaaagacacagattggcagagtagatcaagaaacaaaactcaaCAATGTGCTATATTCAAGAAGCACAATCcaaaaagaaatgtacagatta----AAGCTAAAAGGATGAAGAACAGtgttccatgtaacaggaacccagaaaaaggtaGAAGTAGCTGTCTGAATTTTAGACAAAATGGACTTCAAGACAAAACTGATCCAAAGAAGCACAGAAAA-----------TCATTATAAGGAagcaattcaacaggaagagctAACAGT-ATAGATATACATGCATTGAACACTGACTTGTCCAACTTTATTAAACATACTAtgggacataaaagatcaga---taaacagcG----ACACAATTATAGTGGGAGACCTCAATA-----------------gtcagatcaattagacaaaaaaatcaacaatgagatATCAAAGATGAACCAAATCttcaaacaaatgaatttaaCAGTTATctacagagtgctccatcc---aacaGCAGGATACATGTTCTCAAAATCATGTGAGATGGAAAGTCACatgagactttctccaaaattGACCACATCCT-GGCTTTAAATCATGCCtaagtatatggaaaaataatctaaattttaCCATTCATATTACCaaatcacagtgcaatgaaagtAGAAGTcaagagcaaaagaaaccacagaaa------------------attaaACCATATCCTCTTGAATAATTGAtggttcacagaagaaat---taaaaatattagaaagtttttagaaataaacaataataccaTTACAGCATACCAGAACATATGTGTCACAACGAAAGCAGTCCT--GAAGTAAGTGGATAGCtctgaatgcccacatcagaaaaacagagcaagttcaAATACATAACCTAGTGTTACACTCCAAGGTCACAGAAAAACA--ACATCAATCCAAATCCAAAGTTAGTAcaaggaataaaattataaatatcagaacagaaatcagtgacattgaaactttgaaaatta--caaacaatcaacaaatcaaagagctggttctttgaaaaaataaaca-----gacaaattcCTACTCAATCATatcaaaataaagagagaaaagatcCAAACCAATCCAGTCAGatacaaaaaaaggcaaaatcacagcagacattgctgaaatccagaagataatTAGCAATTATTTTGAGGatctgtattttaataaattggAGAACTCAGAAGAAGT------ATGTCCCTTACATGCATGTGAATGACCAAAACTGGaccaaga--aaatttaaataccCTAAAATCCAATAACggacaatgaaattgaagaaatgaaaaa----ctaccaactaagaaaactTCAAGTCCCAGTGAGTTGactgctgaattctgtaagaacttTGGGGAGGATCTAATGCCAAAATTCTTTAAATCCTTcagtgaaatttaaagggaagggATACTCCCAAAGTGACTCCTAGAAGACATCATTATCCTTTTTCTAAAACCAAGAAAGGACTCAACTAATAAAGAGAAGCACAGACCAATCTCTTCAAAGAACATCAATACAAAAGTTCTCAATAAGATACAGGCAAACaagatgcatcaaatcatcaaaaacATCATATATCAAGTATAAGTAGGatccatcccaggaatgcagagatggttcaatat--------------atgtaataca--acacaaacagaagcaaggataaaaaacacattatcatctcaattGATGAATAAAAGCTTTTT--CAAAAT-TAACATTCACTCATGACAAAAA-CCTGGAAAAAT--AGTAATAAAGGATCTtatatcaatctgataaaagccatttatgacaaaccc-tGGCCAAC--CATGTTATACAGAGGAAAATTG--------tcctttaaaatcagaaagaagacaaggatgcCTACCATCACCATTCTCATTCAACACAGTTCTTGAAATATTATCCAGAGAAATCTAGcaagagaaacaatgaaaagaGATCTCTATAAGAGA----GAAGTCAAATTAATATTATTT-CAGATGATGTGGTCCTCTACATAGAATCACCAAAGAATTTCACTGAAAACCATATAGCATTAATTACCAAATTCTGTAGAGTAtcagaatacaaagtgaac----aaaattcaaca---ttcctatacacaaataataaactcatcaAAAgag-aactaagaaaataataccattcacaatacaattcattaagaaaaattaaacatttaggaATTGACCTAATGAAGAAAGTGGGACACCTGTACAagaaaaactacagtattctcaa-aaggagatcaaagaagacatcataaaatggaaagacaacccttCTTCCTGAATATTCAGGAT--------TCAAAATGATCATTTTTCCAACACTCATACACAGGTTTTaacacaatctcaatcaaaatgccaacagcaCTCCTCattaaaccagaaaaaaatactactaaaattcatttagaagcagaagagactcagaatagcaaaagcaatcctatgCAATGAGAATAAAGTGGGAGGCATCACATTCctggacttcaagttatactgcaaagccatattgataaaaacagcatggtactgaccaaaaactgaatatttgaatcaatagaacagaataggGGATGCAGAAACAATTATAGGCAACTCACCTAT------CTGATAtctgacaaagaagccaaaagcATACACAGATGGAAACATAATCTCTTTATCAAATGGTGCT-GCTTAGCCACacatt-----------------gaatctagacccatgtctctcatcatgtagtaaactaaaatcaaaacagttcAAAGTTCTAAaggttaaaatagaaataat----ctgctggaagataaaagagGTAAAACCCTTGAACACA--GGTGCAAGCcaggactttctgaatagaaaaaaa-------------taattccaagaatcaacaaataggatcatataaaattaaaaagtttctgcatagaAAATTAagtaaccaacagagtgaaaagataacctttggaatgaggaaaatattctgttaaatatttt---tcagacaaaagactgatatcaagaatacataaagaactctaaACAATTAGATCTCCACAATTGAAGACTGATCAAAAAACAGGCAGCTGAAATGAATGGGCACTGCTCAGAAGAAGCATAATCTGGATACAGGGTGCACATATTTAATCCCAGccctttggagactgaggcaggaggatcactgtgaactTGAGACCAGCCAGGCCACATAGTGAATTCTAAATCTGAATTATATAGGGAAATTacctaaaaatgattttttaaaagtaaaatggccaataaatacatgaaaaaaatgtttaatatccctgattattagagaaatgcaaattaaaacaacactgagattttacttTACCCTAAATAGAATGGATATCATGAAGAAATCAgataatagcaaatgctggtaAAGCCATT----AGGAGGAATATTTCTACATcattgatgggaatgtaaattagtacaaccattatggaatcCAGtacaaaaattcttcaaaaaattaaaactagaaattccgtttgacccaactattttccttctaagtattttcccaaaagagtcaAAGTCATCATAGTACAGTGATACACAGATATCCATGATTATAGCAACA----taataacagctaaatcttggaggcagcctgtatatccatcaacagCTGAATAGAT--aacaaatacagtatttatacacaatgatgTAGTACTGTGTCATAACAAAGAATAAa--caagtcatttgtagaaaaatggatacacctgGAGACTATAAtgctaaacaaaataaaccagacatacaagtttaaatatcacatgttctctcttata

a score=26466
s chr3           17385370 1820 + 160039680 ATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATC----TCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAAT--TTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA----------CACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAG---------------ATTCAAAAATATTGAAATTGTCCCAT--GTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGA--------AACTGAACAACACTCTTCTCAATGATACCTTGGTCAA----GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA--------CAT-CTAAAAGCTCTAG---------------------------------------------------AAAAAAAGGAAGCA----------------------AATTCAC----CCAAGAGGAGTAGACGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG--TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGG
s HiC_scaffold_1 89719555 2099 + 233722169 ataAATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTA----AAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaa----atattgggcataaatattaaaaatacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTCTCAAG----CAGATCAACTAGCcaaaaattaaccaa--aaatatTATAGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaaatagacAAAGACTCAGACGTTTGTTAAGTATCCAAAACACCT---aatgaatcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAATAAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=74783
s chr3            17385391 3720 + 160039680 ATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTC-ATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCT--AAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTA-----ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG----ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTA--ATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta---actcaaacaag---tcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatg---------gaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat------gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaagg--tggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattct-cacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaa--cacaatcacaa
s HiC_scaffold_1 110855274 3525 + 233722169 ataCTAAAAACTAGACTGGAAGATTGGAT-CAAAAACAGAACCCAAGAGTCTTCTGCATTAAAGAAAC--ATATAATCAAAAAAGACATTCATAGATTAAAcattaaaggatagaaaacaacttTTCATGTAGCATGGCACTTA-AAACAAGCAGGGTTAACAATTTTAATATCAGACATTATAAACT--CAAGCTAAAATTGactagaagagacaaagaaggtccaAACATACTAGTGAAGAGAACAATCCCGCAAGAAGAGTCAACATTGATAAacacatatgcaccaaatgcTAGAACATCTATTTTCATAAAGCAAaaactactgaaattaaaaagtaaaataaacactaGCACAATCATACTAGAGACTTTTAATGTCACACTTGTATGAAGagtcaaataaattaaatataaaacaaacaaataaatgtcaGTTATACCACAACT--TTGAACACATGGATTTAATTCATAAATACAGAGTATCAGACCCTGTAAAACAAAA---TATGCATTAGTTTCAGCAACATatggtacattttataaaatagatcacatactagcccacaaaaccttcttaaataaatataaaaagaatttaaattactcCTCTAATGCTATCAGA---ctgtgaaaagaaaatagaaatcagtgacagaaaaaatttcagaaatgcaaaatttCC-TAGAAAGTTAACAAAATACTACTCTTCATCCAattggtcacagaagaaat-----------ttcaaaaattctgaAAGTT-AGTGAAAATGACTGTAAAATTCAATGAAACATCTGGGACActattaaatcaattctaagataaaatattattgtaatCAATGTTTATATTGGAAAAATAGAGCAAGCCAAAGTAAACAACTTTATTAGAAATCTTAAGATACTTGAAAAATAACAatccagt--acaaaacaaaattaa--ggaatgaaatTATAGAgattagagtagaaatcaataaacttgagacaaaaataactgt-aaaaacattaaaaaatcaaagagcttgttctttgaaagaatacatgaaatagataaGCCTTTAGCTAGACTCACCAa--gactaagagaaaaaaaaatacttatattAAGAGAat----------aaaggtgaaatcacaacagttTT----GCAATCCAAAAGAtcgtaactactttg---aaaaatttataatccaaaaaaataccaaattttgAAGAA------------CTGGTCACATATAAACTTCCAAAACTAAAAAAGATGTCATAAATTTGATTGATAAACTAGAAATAAGT-----ATGGAAATTGACTAAGCAGTAAAAAGTATACCAACTAAATATAGCCCAGGACTTGATTGATTTATGACTGAATTCTA-CAGTTTTTTAGA----ATGTTACATCAATACTCTTcaagattttcaaagaaaataaaggaattggAGTACATCTAAATGCAATTGTGGAAACC---------CTGCTACCAAAACTGGATAAAAACCCAACTAGGAATGGAAACTGTAGGACTGTCTTCTTACTGAACACAGATGAACAAATCTGCAATAAGATATTAGCAAATTAAA---ATGAGCACATTATCAAAAAGATGATACATTATGATCAAGTAGGTTTTATTCCAgagatgcaagaatggttcaataTATATATAAGTGCACAAATGCAATATATAACATAAG-AAGGAGAAAGGTCAGGACCATATAATCATATCA--AGATACAGAGAAATCTTTAAACAATACTCAATGTCTCTTCATAAACAAAACCCTGAAGTAAATTGGTATAGAAAAACCATACCTGAGTGTGATAGA--CTATTTATAAAAAACCAATAGACAGTATTGTACTAAATaagaaaaagctgaaaacatTCCTCTTAAGTTCaggaagaaataaatgatatTCACTATCAAT---TCTTGTTAACAACTTActtgaaatattatttgaaacaacgaagcaaaacaaagaaat-aaagggatacatataggaaaagaGGAACTCAAACTATGATTATTTGtagatattaaaatattgtgCAGACAATACCCAAAGAAATCC-ACAAAATACTATTTGAATTAAGACA-AACTTTAGCAAAGTAGCAGGATTTaagataaaacacaaaaacaaagattCGTTAGCATTTGTGTATACC---AACGagtgggaagagaataaaattatgacAAAAATACCATTCAtagtagcttcaagaaaaatgaaatatctcaGAATTAACCCAATAAAAGGGATGAAAGA-CTTTACAAAGAAACCCATAGTACTGTGAAGGAGGCTCTTGAAatggacatcagaaaatgaaaaaaaaaaaaaaatcccct---cttCTGGATAGATAGAACCAgtattgtcaaaatgaccataattctAAAACTGTTATATGCATTCAATATactcctaatcaaaataccaacagaatAATTTacagatctaaaaaaaa-aacactaaaattcatatagagcTATAAGAGActgagaataacaaaagcaattttgggTAGTAAGAAAAAGGCAGAAGGCATAGTAATATCTGACTTTAAAC--TACTTCA-AGTaa-ggtgataaaaacagcatgacattaaaacaaaaacagatatatGTCTCAATGAAACAGAGGTGAGGATACAGAAACCTTTCCAAACATATTCAACTACTTGATCTTTAAAAAAGTGGCCATAAACACAAGTTGGAACTAAGACAGTTTTCTCAACAAGTGGTGTTAGTGTAACTGGTTATTGGTTTGCAGAGGATTGAAAATGGACCTTTGTCTCTCAccatacattaaattaaaatctaaatgcatcaaagttctaaacattaaaacagaaaagttaaacctactagaagataaaataggcaaatCACATGAAGACATACATGAAGGTGTAGGAAAGGATTTTACAAACAGAATATCAACTGTACAAGAAAGAGCAGCAAGAATTAACAATTGAGATTACATCATGTTAAAAAGCTTTGGTATAGTAGAAGA----GTcagtagagtgaagagaaaacctataAAGTGGGAAAAA---TTTACCAATTATTCCTCAgagagaggactaatatctaggatATGCaac-aactcaaaaatatttaaaccaCCTAAAG-------------TTAAGAAATGGGcccccaaaatgaagaaaatattttacagaggaagaaatacaaatggtaatcaaatatatgaaaaaaattttcaacatctctggccattagagaaaagcaaattaaggCAACAATAATATTCTATCTTTCTCCA------------AACattaagaaataaagcaatatcaaATGTTGGTGAAGct----------------------------ctggtgggaatgcaaactgaaacaatcattgtggaaatccgtatagagatttctcaaagaaattaaattagaaat------------------------------------------------------------------tatatgtatcaatattttaatggcaaa---atttgtaatagctaaatcctgggagcagcctgcatacagATTAACAG-gtagtggataaagaaaacatggtatctATATATAACAGAACACTACTTAGCAATAAAAGTGAGAGACCTGA-GACATT-TGAGGAGAAAGAATGTACCTGCAAAATACAgtgctgagtgaaataaaccagactcacaa

a score=57289
s chr3            17385408 2356 + 160039680 AACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACC-----AAAGTCATCAAAAAAGACAAGGAGGGACACTTCAT--TCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCT-ATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAAT---CAGGA---------TCAAGTTGACCTTC-------TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAG-ATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGG-ATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCA----TTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaag---------tcaaaatatcactttttgcagatgatatgat-agtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaatt-agggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctg-tatgat-aaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacatt
s HiC_scaffold_1 127990987 2277 + 233722169 AGCACACAGAATGTATATATAGGATTCAACAAAAtgatatatacaagaaacacatctcacTCTCAGGGATATATATAGAGACTG----AAATTTAAAGGGTGGGAAATGATATTTTAAGTACAAGGAATCATAAAGCAAGCAGGAATAGTCATAATTATATCTCATAAAATAGACTTTAAGACAAgatgaaaataattagaaaagatggaaaaagtcACTGTATAATCTC----AAGGAACAATACATTAAGAGTATATACCAATTACCAGTATATAATAGACCAAATGTCAGAGCATCCA-ATTTTATACACAAATGCTACTAGATATAGAG----AGATAGGCcccaatacaattataatgggtgACTTCAACACCCTACTCTCACCAATTGATAGATCATCAACACAAAACTCAATCA--AAAAGTCTGAGTTAAATTATAAT-ATAGATCAACTGgatttaatagatatatacagagtattccataaAACAgctgcagaatacacattcttttgaTCAACACATGAAAGCTTtcctaaaatagatcatatgttAGGAAAGGAACAAAG-ATTAGTGGattcaaaaatg--gaaataatttcttgtatcttatttgatcataatggaattaaactagaaatcaacagtaAGAGAAACTCCAGAAAttatacaaacacatgg-aattGAACAACATATTATTGAATGAACAGTGGGTCAAAAAAGAAGTCAGaagggaaatttaaaagtttattaaattggatgaaaatggaaacacaatgTAGTAAGATCTGTGCTACAGAGAAAAGGAAGTACTAAGAGGG-AGTTCATAGCAATGAGTGCCAGCATGGAAAA----TAGAGATCACA----AATAACTTAATGATATATCTTAaggtcttagaaaaacaag-agcaaactAAGCTCCAAATcgtatagaaagaaagaaacagtataGATCAGGGTACAAATAAATCAACTAGAAACTAAAAGAACAATACAAACAGTCAATAAA---------CAGTTCTTCGCAAAGAtaagtaaaattgacaaacctaTAGTTAAACT-----aatgaaacagtgaaaacacccaaataaataaaactagaggtgatattggagacattacagtgGATATCACTGACAATCAAGGGATTATTAAGGACAATT-TGAAATACAATATGCcactaaatttgaaaaacaaggGGAAAACTGCATATTTTTAGATGCATATGACCTAAGAAAACTGAACTGACAAGATATAAAATCTTAAGTAGATCTTTGCCCACACTAACAGTAATAAG-----CAATGAAATTATAGTAA-TAACAAAAGCcttccaa-caaagaaaacccaggactggatgaattcactgctgagttTTACTGGTCTTTAAAAGAA---------CTAATGCTACTTGAACTATTCCATAATgtagaaaggaaaagaactcTTTCAAACTTATTCTACAGATCCAGTATTACCCTGCTATCAACATC-TAGCAAGacacaacaaagaaaagagaattagAGAGCAatatccttaatgaacatagatataaaaatcttcCACAAATCACTTGCAAATTGAATTCAATgacacataaaa-----tatatactatg-tCAAACTGGTTTTACTGAAGGGAATGCAAGGataattcaacatatgcaaatcaataaaggta---CAGCACATAAATAGAGCCAAGGAtttaaatcacatgatcatcgcaataagtgcaaaaaaaaaaaaactttgacaaaattcaacattccT------------TTTTGAATAAATAAGGTATGGAAGGATCatacctcaaaataataaaagttctaAATGACAAACTCACAGCCAATAC---AGTCAATGTACAAAAACGGAAAGCATTCCTTCAAAGTTCAG------AACAAGGCTGACTACTTTCACCACTCTGATGCAGTGTAGCACTAGACATTCAAatcagagcaatcaggcaagagaaagaaataaaaggtacacATGTAGGA-------AAGTTTTTTTTATCAAACTATTTATGTTTGTAGATGATATGATGGGTACACATATGAAATGCTAAAACCTTCACCAGAAGACTTTTAGAACTGATACATGgattcagcaaagtagcaggatataaaatccaCATATGGAAACCGATAACTtttctgtacaccaataatgagcTCTCTGAGAAGGAAATTCAGGAGACCAATCCGATTCACAACAGCCA-------------------------------AACTGAGGATATGAAAGAGCTTCCACAATGAAAAACTGTAa--catcaaagaaagaaattgaagaagcaCT-AGAAGTTAGAAAGATCTCTCAGGGTAAtggactgggaaaaaaaaaatt

a score=15716
s chr3           17385470 923 + 160039680 AAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTC--CAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT---TGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGA-AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAAGAAGAACT
s HiC_scaffold_1 87165018 864 + 233722169 aaaaaaat---cactgagtaaaaatcagagacagaaacaaaatt------aCATATGATGGGAACATGGCAAGAAGCCAAAGTTGCTATGCTAATTTTACATAAATTGGATTTCAAGACCAAACT----AGAAGAGGCAAAAAAGGTCACTACCTATTGGTTAAGAGAACAGTTCAACtagaagagataataattat-----tCAGTGTTCACTAAACACTAGAAAGCCCAACTTCATAAAA------CTACTGGATATAAAAGGTCATATAAATGC-----AAACACTTAAAATGGGAGACC--------CTACTGTCATAAAT----AGatca-----aaagaaat--atcagagttgaactaAACCT-----------TTGAATAAATAGGCTTAATAGGTATCTATAGAGTGTTTCACCAAAAAGCAACAGAATGCATATTCTTCTCAAGAGTACATAGGACTATCTCCAAAATAGGCCAAGTGCTAGCCCATAACATTCAcataacaaaatgcaaaattattgaaattattccatg-----tatgagatcatagtgcaatgaaactagaaaacaaTGGGGGA--AAACACCAGAAATTATCCAAGCATATGAAAATTAAGCAATGACttcttgaataatcaataggttgtagaagaaatcaa-agagaaattaGAG--TTCTTGGAATTAAGTAATAGTGCCAGTACAACATATTGTAACCTGTGGGCCACAATTAAAATAGTGTTTAGGGGGAAGTTTATAACTATGCAcatccacatcagaaaaacagtgaGTCCAAATA--AACAGTGTAATGATGTATCTCAggatcatagaaaaaaaaaagaacaaccaaATCTAAAGCTAATACAcataaggaaattataaagatcaggacAAAAACTAATcaagactaaaaacaaaacaaatt

a score=6696
s chr3           17385501 327 + 160039680 CTGGAAAACAATTTTCCAAGCAAATGGTAT-------GAAG---AAACAAGCAGGAGT--AGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA-CACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAA
s HiC_scaffold_1 63812792 323 + 233722169 CTGGAAAGTGAT------AGAAAATGATATTTCTTTGGAAACCAAAGAAAGCAGGTGTGTAGCTATACTCATATTACACAAAGTAGATTTTAACTCAAAAATAGtaaaaggagataaagaaagtcattatataatgatagaggggaaaatccatcaagagaaaa----aatactatatatat------ccAACATCTGAGCAACTAAATCCATAAAATAATCGCTAAAATATCTGAAGGGAGA-GTTAAACTACAATGCAATAATAGTAGGGGACCTTAAGGACCCACTTTTGATAATGGACAGATCATCTAGACATAAAATCAATAAGGAAAAATTGGA

a score=40552
s chr3            17385535 2243 + 160039680 AAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGA-CAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTAC-----------------AGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAG-----------AAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-------CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG---ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCT-CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAA-------GCAATCTACAGCAAACCAG-----------TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtat--atataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggat--ataaaattaactcaaacaagtcaatagcct-------------ttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagc---------------cacaaataatataaa-----------------atatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatct-cagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctat
s HiC_scaffold_1 144250098 2217 + 233722169 AAGCTAGCTAGTTTAGCAATTTTATTCTCAGACAAAATAAACTTCAAGCTGAAACTGATCAAAAAagtcaaagaaggtcactacat-------------aaaaGTTTACAGAACAATCCAATACTTGAAAATGTATACGCACTAAATCCCGAGGCACTTGacatcataaaacaaatactaccgaacataaaagatcagatataCATCAACAAAATCACAGTGGATGACCTCGATACCCCACTTGCACAATGAGATCAACTcaaccaaaaatcaacaaaaaaaggTCACA--------------------GGAACAAACAGACTTAATAGATATCAATTGTAGTAGTACTGTAATAGAGTGTTCTACTCTACTGCAGCAGAACATGCACTCTTCTCAGCAC---acaggactttctccaaaatagaccacaga---GGTAATTTAT---------ATAAGTGTAAAAGACTTTAAATCATTCCATCTATACTATCAGATCTTTAAGcattgaaactaaaaacaaatcgTCAAAGAGACcatgagaagtttagaaactCCTGGAAATTTAACAACACATCCTTGAATAcccaatgagtcacagaagaaatcaaggaaaacaaTGGACAATTCT-AGAATCAAAGCACAATGCCAGTAAAACACATCAGAACA---AGTTAACAAAGAAAGTggtcctaaaagaaaaacatatttcagTTAACTACATCTAATGTGTAGTCACATTAaac---agtgagctcaaataaacaactttgtGATGACCCTCAAGATATTCAAAAAACAACAATTTAAGctcaaatttaatttaaagagagaaatcacaagga-----------cagaatagaaattaatgtaacgaagaccaaaaaaatta--caaagaatcaatgaatca--gagccggttctttgaaaagatatatATAAAAGACCCAGCCTTAGTTAAAcctaccaaagaa-agaaagaaaggacttaTATCAAtgcagttagaaatgaaaaaaaggtgTAAATTAAAAGAGACACAATCAAAATCCGAAGA-----TAGTAACTGCTATGAAAAGTTATACTCCAATGAGTATACAAATCCTGAAGAAACAGACAAGTTCCT------ATAATCATTACCAAAATTAaaccaagaaaacataaaaatttcaaacCATCAAATAAC-----AAGCAATAAAATTGATGCTGAAAAATATGCCCTACTAAGAAAAACTTAGTATCTGATAAATCCACCATTGAAATCTACAAGAACTTTCAGGAGATTATAACACACATCCTTCtcaaaatcttcagtgaaattgaaagagaagtaatGTTTCCAAACTCATTTCTGTGCATGAGCGTGACTCTtat-tcaaaaccagacaaggatccaaGGAAAATGA-------CTGACCAATTTCCTTAATGAGTACAGATTCAAAAAGTCCTGAATGAAATATTGGTAAATAGAATGTAACAAATCATGAAACAGATCGTACATCGTGACTGAGTAGGTTTCATCCAGAGATTGTAGGAATGCTTTAGCACCCATAACTCAAAAAACATAGTATGTCACATAAAAAG---TATGAACAAAA--------GTCATATCAATAGACTCATAAAATACTTTTGACAAAACCCAAGACccattcataaaaaaa-------aaaaa----------aaaactaaaaaataggcATAGAAAGATTTTACTGCAATTCTTTAAAAACCAGTCATTAAAAACTGGCCAACATTGTATTAAACtggaaaaaacagaaagtgtcccctccaaaaccagaga-gagacaaggatgcccactatcaccccTCCTGTTCAAAA-AGCACTCAAATCATTAGccagagaaat------agagaaaaagatataaaggatgtgcataggaaaggaaaaagtcaaattattattgCTTTCGGATAACATGATACTTTCCATATAAGATACCTGAAAAACTCCATGAGAAGACTTCTAGAATCAATAAACAAACGTAGCAAGGTAGcaggataaaaaaaatcaacacagaaacATCAATAGTTTGATGGTGCAAACATCTTTTGCACCagtaatgaactcactgagaaagaaattaggaaaacaataccatttacaGTAGCAtcagtgaaaaaatatatatgtaatatatacatatgtagatGCGTCcatatttaggaaataaaataatgaggATAGTAAAAGAATTCTACAACAAAACTGT--AGTACTTT--GGAAAAAATTGAACAGGACatccaaaatgtgaaaaaatatccCTTGTTCCTATGTAGGCAGAACCAATACTGTCAAAGTGATCAT

a score=30965
s chr3           17385573 2391 + 160039680 TGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAA-GAGCAGCCACA-----TTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGA--AACTAAACAGGGACACAC-----TGAAACTAA-------CAGAAG----TGATG-------------------------------------------------------AAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATT-GTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA-----ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAA-ATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCC-ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAG--AGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaa-attccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg-tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaag-----atggaaagatctcccat-gctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttacta
s HiC_scaffold_1 23001333 2270 + 233722169 TGGACTTCAAGCCAAAGCTGGTCAGAAGAGCAAAGATGGCCACTatatattggttaagggaacaatttgACAAGAAAAGATATTGATTGTAAACA---------CAAATTTATTGAACATTCACACACTATTTCATAAAACAGTGCTAgcaa----caaaagataaataaaaatcaatacaattagaGTGGAGGACCACAATACCCaga----acaaagagacagatcaactaaataaacaaaatatacaagCAAATATCAGGTTTGAACCAATCCTCATCAGGAGATCCCAATGCGTATCTCCTATCTAGTATTACTTTTGGATACCTTACTTTGTTAATacactttgaaaaaaaatggac--AAGAACTATATACAgaatatttcaaacaaaaatgacaaaacat----tcTTCCCAAGAGCACAGACAAATATCTCCAAAATAGAC-Acaca-----------------cttaaataaat--aaaagtaatataatttATCCCATTCATATTATCAGACAAGAAtgcagtgaaactagaaatcaaggGCAAAAGAAACCATAGCCATTAtacaaaaacatggaaatcaaGTAATGCACTCA--AATAATGAGTGGGTCATAGATTAAATAAAGAAAGTAATTACAGAATTTCTAACATCAAATATTAATGCTGATACTGCACACTAGAAGCAATGGGACAAAACGCAAGTGGCGC--AGAGAGAATTTTAAAGtt-tgaatgcccacatcagaaaa-gcaAGATAGGCCAAAATAACTCTGTGATGT-----------GCTTCAAAcactgaggaaaaaaacaaacccaaaactagtccaaggaaggaaattataaatatcagagcagaaattaatgattttgagattaaaaaattacaattaatCAAAGAGTCAA--AAAt----------tcatttgaagaaa--agaaatatagaaaaagccTTAGTCAATcttataata----aaaaaggaaatacccAAAACAGAGcaattggaaatgaaaaatgtaagatCAAACTGGACACCTCATAAATAGAAATTATTAACAATTACATT---AAACACCTGTGCTCTAATAAATTGGAGAAGTTAGAAAAAATCGATAGAATCCTAAATACATG--AAGTAtgaaaacagagccaaaaaaatataaatattctgagTAATTTGACAAgtggcaatgaaattgaagcaggaataaaaataatctaCCAAC----ACAAGCCCAGAATATGATTAATTCAGTGCTGGTTTCTACAAGATTGTCATGGCAGATCTGACT-------------------------------------------TGCTCCTCAAATAATTCCTGGAAACTAGCATTTACATGGTTCCAAAACCAgataaaaatctaaacaaaaagcagaa-tagagcccaatctctttaatgaacataaaatcaaaataatgataataatatacTGGCAAACATAATGCACAAAATCATCAAAATGATCATACATCATAATCAAGTAGGCTTTTTCCCAAGGATAAAACGATGGTGCAATGTACTTAAATTTAATAAACATAATGCATCAc----acaaaagcaagaac-aaaatcaGATGATCATAAAATAAGCC-CAGGCAGAGCCTCTGAC-AGATCTAGCA-TCATTCACGATAAAATGCCCAAAGAAAATAGGTGTAGAAGGATTGTGTCTCAAACTGTTAAACGCCACTTATGAAAAACCAACTGccaaaattacattaaatacaaTTACAAGACAAAATCTTTTCCACTGTAATCAG-----ATACaagaatgttgtttttatcact-cttatttaatacagtcttgaaaatatt---caaatcatggaagggacaaaaaaa---taaaaggatatgaA-TAGAAAAGTGAAG---AACACATTACTC-------------------TGCATGTAA--GACCCCAAAACATTCCACAaaatgactcctaaaattaataaccaaatttatcAATATAACAGGATgcaaaatcaacacataaaattCAATGAAGttt----------------------gtgaaaaagaaattagtaaaataaaatcatgcatGATAGCACTAAGGACAAATAAATCCTTAGAAGCTCACTTAAAC-----AAGTGAgagatctatataaggaaaactACAATAATCTgaaaaaaggaatttgaaaag--CACAGCAGGAATTATAGAAATACTTTCAGTGGCTTA---ATAGCTAGAACTGatgaagtcaaaatgaccatatttccaaaactgctatacataTTTAATGAAGTCCTAATTCAAGTAACAACAGTATTCt--aacaa--tagagaaaaaaattctaaaattcacatggagctttaagaga--------aagaaaaccaatccTTGTTAAcaagagcaaggcaggaggcattgcaatctcagattttaaattatatta

a score=9554
s chr3           17385580 588 + 160039680 CAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTC----AATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA
s HiC_scaffold_1 25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGACATAAAGAGTCAGATAGACTTGAATATAGCA-TAGTTGGTAACTTCA-TACCCCAGTCTCACAA-------------------------TAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGCGG----------AATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGG---TCAATAATAAGTAATGAGAATGAA

a score=40828
s chr3            17385585 2563 + 160039680 CAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTC-----------------CAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTT-CTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACC--CAAACCTT-TGGGACAC------AATGAAAGCATTT------CTAAGA-GGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGG-------AGAGAGCACA-TACTAGC---AGCT------TGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG----GAAATAATCAAAC---TCAGGG------------GTGAAATCAACCAAGTG----GAAACAA--GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA---------AACCCTTAGCTA------------------------------GACTCACTAAAGGGCACAGGGACAAAATCCTAATTAA-------CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACC--TTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagt---gaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttga-tcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaa-caattggtgctggcacaactgg
s HiC_scaffold_1 185915452 2552 + 233722169 caaagtattTAAAAAGGGGGAAGATGGGGAGTGCA--ACCACCaggggttcaatccctggcactgcaggaaaggaaaaaaaggcataACAATTTCATATCTATATGAGCCCAGTGTTGGGTCATCTAAGTATATAAAGCAAACGTTAAtggacacaaaaagaaaaataggtagCAATGCCATAATTGTATAGGATTTCAATACTCCACTTTCAATA-TGGATAGATTAATCAGAcaggaaatgaatttaaaaatactggCTTCAAAATGCACGTTAGACAAAATGGACCTGATAGATACACATTGAAACCTCTGCccaaaagcaca-gaaaacatGTTCTTATTTAGTGTAT-ATAGATCATTCTCCAGGATAGACCATGTGTTATGCAATGACAAAATTcctcacaaatttttaaa-atcaaactcaTC--AAGTATTACTCTGAACTACAGTGACTTGAAATTAGGAATCATTACTAAGAGGAACTTTGGAAACCCTACGAGTACATGGAAATTAAGCCGGATGCCACTAAACAGTCAACAGGGCaatgaagaaattgaaagggaaatttttaaaattctagagaaaaatgaacatgaaaacacaacataattgcaggcatggtggtgcactcctgtaatcccagcactcgggaggctgaggcaggaggatcattgcaag-------ttcaagaccagcctgggctacaaagtgagctcaaggccagcctgaactgcatagtgagaccctgtctcaaacaggcaaaaataaataaataaaatcaac---agagGGATAGGGGTTAGTTCTGATATTATATAGCATGTTATGGTAACTATATATAGAAGAATCaattatgtatttcaaaacaaCTAGAGAAGAGCTTGAAGATT---CTCAACACagagata----tttgaaaatatgaaaatattagttACCATGATTTGACCATTATGTATTAGAAGCACGTATTCAGTGACAATACTGTGCCCCATAAATAGGTACAATTAGTGCatggcaattaaaaataaataaaatcacaggtAAGAAAAGAGATATAGCT---GATAccatagaaatacaaagaatcatgAAA--CTATTATGAACAACTTTacaccaaaaaattgaaaaatttt-----------ttggCTCCCAGTCATACAC-AGCTACCAAAAATTAATCAACAAGAAGCAGAAAATTCGATTATACCCATAGAGAGTAACAAGATTGG-GCAATC-TTAA-AGTCACCCA-CCAAA---------GGACTA-ATGGCTTCACTGTTGAATTCtcccaaacatttaaagaagaacCAGTATAAATTCTTCTCAGACTGTTCCTGAAAATCttagagaaaattatttca---aactcATTCCACAAGGCCAGTATTACTC-AATACCATAAACAAACAATGacaccataaaaa-agaaaactatacatCAATCTCCCTGAAGAACATAATTACAAAAATCCCCAACAAAATCCTAGCACACTGAATTAAGCAACACATTTGAAACATCACTCGCTGTAAACAAGTGGGGTTCATCCCCGGGATCccagaatggttcaacatatggaaatcaatcAACACGATTCATCACACTAAC-AACTGAAAGAC--AAACCCTATGATCATGTAA-TAGCTGCAGAAAAAGGATTTGATAAATGTTAACATGTTTTCATGATTAAGACTCTCAAAAATT--GgcataaaatgtacattttccaACACAGCAAAGGCTATCCATGACAAACCCACAGCTGACATCATACTGAATGCAAAAACGTTGACAAATTTTCCTCTAAGATCTAGACCGAGA-GTGAGTGCCCACTTT-----TACTAATATTCAGCACAATACTACAAGTCTTGGCCAGAGCAATTAagcaatagaaataaataaaagccatatGAATTAGAAAGAAGGAAGTCAAATTGT--TTCTTTGCAGATGACTTGGT----CTTAGAAGTTCAAACCTTAAAGCCTCCACCAAAAAACTGTTGATTC-AATGAACAAACGCAGTAAAGTTTcaggatacaa-------------aaatcagtagcattcctatacactaatagaGAACTCCCTGAAacagaaattaagaaagcaaTTTCATTTATAAGAGCTACCA--AAAATTAGATATCTAGGAATGCATTTACT--AGGAGGTAAAAGATTTCTATACT-AAATctataaaacattgatgaaagaaattgaagaaga-cacaaa------taagATATCCCATATTCATGGGTTAGAAGAATCCATGGTATTAAAATACCCATAATACCCAGAGCAATCTACAGAATCAATTAAATCTCTATCAAAATATCAATGtctttcttcacaaaaataga--gaaaaatcctAAGACTCATATAGAACAG-AGAAGACCCTGACTAACCAAA---------------------------GAGAGAATCAC--TCcctgattttaaaacatactaCAGAAGTCTAGTAACCAAAACAGCACAGTGCTAGTGTAAAGACAGACA--CAGgtcaacagaacaaaatagagggCTCAGAAATAAATCTGTGGATCTACAGACAACTGACTTTTTGACAAAGTA-CCAACAGCAAATACGGGGAAAAGAACAGTCTTATTAATTAAATAGTGTGGGGAAAGTTGG

a score=69046
s chr3           17385600 3277 + 160039680 AGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAA--TTC--TGAATATCTATGCTCCAAATACAAGAGCAGC-------------CACATTCAC--TAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATT--CACATGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATG--------AAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTG--ACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-------TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACA--AGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGAT----------CAGGAA--TTCAA---------------GGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcc-----------------------------------------------------------------------------------------------------aacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctc-tacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataa-aatatctcggcgtgac-------tctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtata--gagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat---gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga---------cctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggt-ggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaa
s HiC_scaffold_1 72973619 3284 + 233722169 AGACAAAAATGaacccatgaaacagatccaaggaGAAATCC------AGGagtttaaaaacttcattgaaagtatATGTAGCAAGTTGAATAACAGCAAGGATAGAAAATCAgatccaaaataaaagaatatgactaatgaccag-gaaaagaaagagactaACACAATTGAagtgggggaccttaataccccatacTTACAAATgcataaatcaactagacaaaaatatcAACAATGAAATGATACAATTAAACAtagcctgtgaacaaatgggcttggtGAATGTCTATGGAGTGTTTCGTCACAAAACAGAATTGTATACATTCTTGTCAGCTGCATATAGGACATTCTTCAAAATCAATCACATATCAGGCAACCAAACATGCTTTAGTAAATGTagaggaattgaaatcatcctatgcatattatctgatcatagtgcaatgaaagtGGAAACCAACaccaaagaaaatcacaaaaa--ctacattaaaatatggaaatgaaaGAACACTTTTCTGGGCAATGAaa---gggtcacagagaaaattaaaaacagaattaaatagtgtatatatttaaatgataatGATCATTTAAATGTATAACACACTGAAACTTATGAGACGCAATGGAAGCAGTCCTACAAGGGAACTTCC------------ACATCAGGATAgca---gaacaagctcaaataaccaacctaatgttgaacttcaaatttctagcaaaagaacaaatcaa---acccaaagcttgtaggagagaggaaattgtaaaaataagagtagaaattaatgcaatacagactaagaaaacaat--aaaaactcaaTGTATTGaaaa----gttctttgaaagaataaataaaattgataaaccaccATAGAACATgatcaaaaagaggaaaggaaaaa--caaatccatgcaaatag-aataaaaaggagaaaatcaaaatggattccACAGAAATCAAGGAGATAATTTATACCTACTATGAGAACCTATATTTcaataagatgaaaaacacagaagaaaaggatagattcctagacacaatTAGATTTTCAAAGCTAAATC---accaaatagaaaaattataaataacctgatgtcagccaatgaaattgaaaatgtaatgaaacctttttaccaataaagaaaagcccaggccctgatggagtcactgttgaattttatcagaaatttagagaa---ctaatGTTACTAATGTTGAAACActttaaataaattgaaacagAGCCAGTACtttcaaaatcattcctggaagcacctATTAACCTATTTCCACAACCAGAGA---ACCCAACCAAA--AGAAAGCTacagaccaatcttcctaatgaatacagatttaaaaaaaaaaagtcctcaataagatactggcaaacagaattcacaaac-catcaaaaacGTCATAAACCATGACCCACTATGATTCATCTcagaaatgcaaggatggttcaacatacagaaatcaataaatgta-------atattagCAGAACAAAAGTCAAAacttacatgatcatctcaatagatacagaaaaagcatttgacattaAGTCCAAcacccactcatgataaaaacctacagaaaatagCAGACTTACAGGAAATTGCAAACTTACAGAAAAGGTGggctttacttcaatctgataaatggcatctatgacaaaccaatagctaatatcatattaaatggtca-aaattggaagttttctctctaaaattgagaataagacaaggatgttcg-TTGCCACCACTCTTGTGGAAATTTTAC----------------AGCAAtcggaaaagtaaaagaaagaaaatgaatgaagataggaaaggaagaagttaaattatcatcatttgaaGATGATCTGATATTCTttatagaagatcccaaaacttTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA----------------------------TTCAGTAGTATgacaggatacaaagtcaacactcaaaactcagtcATTATTCTTGTACACCAACAACCAACtctcagaaagagaaattaaggaaaacacaTCCTT---AATAGC--ATATTATTATAATAGCATccagaaattattatttaatctaacaaaggatgtgaaagatctatacagtgaaaaccacagtaccctaaaaaaggagattgaagaagatatcagaaaatagaaagatatcgcTTGCTCttaga-cagaaaaacaaaca--gtgaaaatggTCCTACtctcaaaactgctatacagatttcaTTCAATCACAGTCAAAATACCATGAAtgtatctcacagatctagagaaaacatatgaaaagttcatctggaaccagaagaaactgaGAATAGCAAGAGTATTTATGTGTaacaaagacaaaacagc----agGCAAGGCACAATTGCAGacc-aaaattatactacaaagctactctgcaaaaatcagcattgtattggcaaaacaaaacaggcctGAAGAACAGTGGAACAGaagagaagatgcagacacaactcctaacacactcaactaccttatttCTGACacaggagccaaacatgttccctggaaggaAGATACTCTCtataataaatggtactggaaaaactggttttccatatgccaaagaatAAATCTGGACTCATGTTTCTC-ACATGCATCAAACtaacatcaaaatggatcaaacatctaaacattaaaacagacaTTCTTTATTTActtgaagagaaaataggtagaaatcttgaaaacatacaGGTCACCAGG----AACTCCAGACTACaaaggaaa-------tactacaa-----agaatcaacaaataagatcacaacttcttaaaaaaaaaaaaaaacctttg--acacaaaagaaatcaccaac-agatgAAAAGAtatccaacagaatgaaaaattatAGCCACTTGTCCT---TCAGACAAGGagtt-atatctagaatataaaatgaactgaaaattatCAGGCcacctaaattcaaa-gacctaatctaAAAATGTACCtc--------------aatacacac---------------------------------aaaaaagttca-------ttgtcactcaagagatgcaaatgaaaacaacatggcattttcatctcactccagaacgaatggctgtcatcaaaaaatcagtgaataacAAAT-ctgatgaggctgtggggaaaaaggaacccttttgcACTGTTAATGcaattgtagactggtgcaaccactataaAAATCAATATCAAGATTCTTTACAAAACTAGAATTACAGGTCCGGTTTGatgcagctattccccttctgagtataatgtcagaagaa

a score=13818
s chr3            17385681 840 + 160039680 TACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACA-ATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAA-CTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT---CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGC-CACAACGTACCCAAACCT--TTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG
s HiC_scaffold_1 154982297 788 + 233722169 taCTGGAGCAcccaaattaataaaacaaatactgcTGAC-CATGAGACATCAATTGAATACCAAGAAGATCATAGTTGAAGAACTTAGTAC-CTACTTTCACAACGAgtcagatcaactaaacaaaaaattcagtaaaaatatATTAGAACTGAATGTACTTTTGAA-CAGATAGACTTAATAGACAACTATAGAATGTTACACTGTAccacaacagaatacatattcttctcagcaagACACAGAGCTTTCTCCATTATAGACCACATACT-GGTCACAAAGCATGCCTAACAAACTACAAAAGTATTGACATCATCCAATGTTTACTATCAGAACATTGTGCATTGAAAGTAGGCATTAATCACAGAAAAAACTGTAATTTATAAATA-CCACTTGAAAAC--AATAACAATCTGGAACACAAAG------TGGT----GcataaaaaatcaaaggaaatgaaTAATTTCTGGAATCAAAT-AATATGAACTGTACAACACACCAGAACTTACCAGAGATACAAAGAAAGCAGTCTGAACATGGAAACATACAGCAATCAGTGTTCATACTACAAAACTagaatgagcccaaataaataatcaaatgatGAATATCAAGATActcaaaaatgaacaataaaatgaatttaaga-----------------------------atgGAAGAAATTAATGGAATCGAGActaagaaacaatat---aaaaatcagtgaatcaaagaa------cttttgaaaaataaataaaatatatggccACTCAGACAaacttaccaaaag----aaagaatgaatcgt-atcaatgcaattagaattGAAAAAGG

a score=10676
s chr3            17385743 552 + 160039680 ACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGAT-----------------------------------------------CATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAA-TAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAG
s HiC_scaffold_1 162323312 576 + 233722169 acacaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGATGAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaa-tatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAA----GCCATACAGCTTAGTTATa---------tcaata----caaaaa-attaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaa-aatcaaaggcaagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacag-aagaaatcaaatacttCATATAGTTAAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatt-taagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGG

a score=21733
s chr3           17385746 1152 + 160039680 CAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACAC--TCTTCTCAATGATAC-CTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA--------------ATCCTAATTAAC-------AAAATCAGAAATG-AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATA-----GAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC
s HiC_scaffold_1 66787240 1110 + 233722169 caattataacaggaaacctaaataacccactgtcacaaatagatcaaccagAGAAA---ATATCCAATGAAGAGATATCAGAGTTGCAAGAAACTTtgaaccaa-taaacttaataGAT---TAT------TTCCACCCAGCAGCAACagaataca--ttcttttcagcaataCACAAGACTTTCTCTGAAATATATCAAATACTAG----CCAAGAAggcttaaataaacacaaaagaatcaaaattatcccacacatgttatcagatcatagtgcagtGAAGCTAGAAATCAACGGCAAAAGAAACCAtggaaattatgcaaacacatgcaAAGTAAAATACACATGCAAAGTAAAAATACACTCAAATAATCAGTGAGTCATGGAAGGAATTGGACAGTTCTTAGAATC------AAATGACATTACAATGTACAAGAACCTATGAGACACAGCAGAAGCACTTATAAAAGGTAGGTTCATAGCTATCAATGCCCTCATCAGAAAA--AGAATGAACCCAAATAAATAAGCTAACAATGCACCTCAAGgttctaaaaaaaaat---ccaaat----ccaaatatagtacaaggaagaaaaatataaagatcagaaaagatattaatgaaatggagactcaagaaacaaaacaaaaaa-taacaaaatgaagatTTAGTTCAttgaaacattaaatgaaatagacAAATCC--GGTCTTCCccgaaaaaagacagaaagaaagaagagaaaagaaaggatgcAAATCAATCCAGTTAGAAGttagaaatgtaaaaatgcaAAACCACAATGAATTCTGCTAAAATTCAAAG-ATTATTAGTACTTACTCTGAGAACCTGTACTCCCGTAAAATAGAGAATTC--------------AATGATTAGAGACATATAAActa-caaagctgaatcaaga--aagtaaagatttttaataatCCATAATT-----AAGAAACAAGTTTGAAGAGTTTAAAAA----CTACTAACCAAGTAAAACAcaggtcttgatggatttactcccaaattctacaaaaattttaaggaaaatctaTTTCCAATACTCTTCAAGCTCcgtaataaaattgaaaaagaaagtacT--------GCCATTCTTGGAAGCTAGCATTAACCCGATTTCAAAACCTGAGAAGCACC

a score=10693
s chr3           17385747 690 + 160039680 AATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACA---------AATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTC-TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA--AGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 96150032 642 + 233722169 aatcatagtgGGGGACTTTATTATTCCACTTTTACAATTAG----------GAACCAAAGATAAAGCAAGAA-------------ATATCAGCGTTGAAACATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATATCTTAGGCTTTAAg-catacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTACATAAACAATA----GATCACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGT--------------TTACATCTGTAAATGaacatacagaaagaatagaGGGATCCCA----AATAACTTAAGGATGACTCATGAACTCCTAGAAAGTTACAAA--AAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCA-AACAATATGAGGgactaatgaatcaaagagtgga--CTCTGAAAAAGT

a score=34740
s chr3           17385793 1884 + 160039680 TCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACT------------------AAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT---CTCAAT--GATACCTTGGTCAAGGAAGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCA-CATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGA-GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA--AAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG--ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT------CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCAC--AAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACAT-----TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta---actcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1 38614215 1826 + 233722169 ttatataaaagaaaaataaatgag------ttgaaac------aaatttttgaacaaatgaacttaatagatatAAACAG--TGTTCCACCC---ATCAAGAGT---CACATTCTTTTCCATTGCATATGATAGTTTCTCCAGAATAGATCACA-----GTGAATAAAGCATTcctaagaaaatgcaaaagaatgaaaaatttaccatgcatattatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaa-aaataataaatccccAAA--CCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACCAGAACTCATGG-CCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaataggaaaatccaAA-----CCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaatcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaaggaaaaag---aaaacacaagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAG----TGTGCAAAACAGTGAGAGAACTCAGAAAAAAC----------TCAGACA--TACAAATTCCCAGAACTGACCCACAAAGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTT--CCAAAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGCAGGCAAAGAGAGT-----GACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA----GTCTAGCAAACTCTAACA-AAATTCTTGAAGAAAATT-------GTTTGGAAATTC---TTtagtac---aacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGA-AAGATGAACATCTTCACTCTGTTACCA------------------CCACT---------CTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGATGAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACT-CACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtag--aaataaaaaaataaatacacaaaaaag--aaaagcattcctAATAACAGTG-atgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=11393
s chr3           17385857 580 + 160039680 TGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACC-ACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA--AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 96522418 566 + 233722169 TGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTTAAaca----caaaaatactgaaataatacAGTGCATATTAATGGGTCAT-----actaaaatgaa-----attagaaagccacaaaaaagaaactgctcagatCCATGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaataca--aatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=58423
s chr3            17385866 2835 + 160039680 TCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAA-CTCATAGCTATGAGTGCCTTCA-AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC-----------------TAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAG-ACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA---TCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA-CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATG---AACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAG-------------------CAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAAC--CACACGATCATCTCGTTAGA--TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG-----TTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGG---------CTGC--CCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgac-------ctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggctt----------------------------gtgctgtaagatcgag----------------------------------------------------------------------------------------------aattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggg--gct----------------cagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaatt
s HiC_scaffold_1 223975016 2809 + 233722169 TCTACACAACAatt---acaacaacaacagaatacacattcttctcaggaatACACgggattttctccaaaatggaccaTGTGCTACCT-ATAacacatgcttaagtaaataaaaaaaaactgaaattattccatgcatattatcaaatcat-ataaaatgaaactaaaaatcaatggcaaaagaaatcccAGAAAGTAggcaagcacatggaaattaaacaataccctccAAAAT--------------------AATCAAGAGATAA------------------------------------------------------------------------TTCCTAAAATCaaaagtttatagctgtgaatattcacataagagaaacaagAGTGAGCTCAAG---------TAATGAAACCCCTcaaattcttaagaaaaaaaaaa---------tcccaaactagtacaaagaagtaaattatataaagcagaacagaaattaattaaattaagaccaaaaaaac-----aaaaaatcaatgaataagaTAGCcagttctttaaaataacaaataaaatagacCAACACTTACCCAATCTAGCCCCCCAAAAAAGacaattagaaagaaaagaaaaagaa----agaaaatgaaattagaaataaaaaaggcaaaatcagaaCAGACAAAACCAATATCCAAAG-ATTACTAGTaacttt---gaaaacctatattctaataaaatggaaaattccaaagaaatgaatagattattgca----tatgaattaccaaaactggaccaacaaaataaaaaaaccctgAGTAATCCATTAACAGGCAGTGAAACTGAAgtagtagttta-------------aaaaaaaaaccaagactaCCAAGGATCTACCTCCAAAGTCTACAAGAATTTTAGGAAAGTCCTTCTAAGGTcaatacttctcaaattctttaatgacgttgaaagggaaggaatactccGCAAATCATCCCCAGATGTAAC-ATTACGCTGATTCCTAAAACCAGAAGAGGATCCaagcaagaaagagaactacatgaCAGTATCTCTAACAGCAAACATGGACTAAAAAATCCTCGACAAGATATTGGTAAATAGAATGCCACAAATCATCAAATATATTTGGTCATATATATTTGGTCATATATCAcgaccaaataggattcatcccaggcgtgCAGGGGT----CAACATAC--AAGTCAGTAAAT----------AAATCAACAGAACCAACgacaaaaatatcacatcatcatctcaatagacatgaaaaaaaaacctttgacaaaatccaacattcattcgtgataaaaaaaaaaccctgaagaaaacaggtat---agaaTTTTACCTCAC--TGATAAAGGCCATTTGGGAGTAACCTACTGTCAACGTCACATTAAATGGGAAAAAGCTGAAAGTTTTCCCTCTAAAGTCAGGTACAAGCCAAGGATTATTCACCTGctttcactatcaccactcttgttTAATAGAGTTCTCAAAACATCAATCAGAGCAATcagtcaagagaaagaaataaaagaggggtaa----gaaagaaagaagtcaaattatta---tttgcaggtgaTAGGATCCTCTATAGAAGAAGC---AAAAGTTCCATGCAAAAACTCCTGGAATTAATACACAAACTGGGCAATGcagcaaaatacaaaatcaacactcgaGAATCAGCGGTGTTCCTGTATTCCAGTAATGAACACACTgagaaagaaagtaagagaaCAACTCCATCCACGAgagcaccaagaaaaattaagtgCTTAGGagttaacctaaccaaggaagtgaaagatctg-------------------------------------aagaggacatcagaaaacagaaagatatcccAT--TCCTAGATAGGCAGAGCCAACACTGCCAAAACGGCCACACgtccaaaactgatacacagatataacacaattccaatcaaaagacCAATAGAATTCCTCACAAAACTACAgcaagcaatcctaaaattcatatgcaagcataagagacccagaatagcaaacacaatccacaaaaccaaagcaa------gagGCCTCAGAATCCCAGACTACAAAGCCACAGTTATCCTACAAAACtacagttacaaaaaaaaaaaaaaaaaacagtattggCAAAAACACAGACATACAGATCAACGGAACAGAACAGAAGGTTCA-AAGCCAGCTCCAGCACGTTCAgctacctcatctttgacaaaggtgccaaaaacaTACACTTAAACA---ActgcctctttaacaaatggtgttgagaAAACTAGCTACCCACAAGTATAAGATGGAATCTAGATCCCT--CTCCCACTATGTACgcaactaaaaccaaaatggatcaaaggcctGAACACTGAACCAGAAACAAT----CTGCTGTAAcataaaacaggtaaaattcttgaaga------cataggtgaaGATTTTCTGATcagaaccccagttgcacaatAATAGCAAACCTACTGTTAACAGGagtggtgagagagagagagagagggtgtcCTTGACTTTCCTGAGTTCAGAGGGAAAGCTTTCCGCTCTTCCCCATGTGACCTGACAGCAGGTTTATTATAAAGACCTACCAAATCAACAAATAGGGtcatataaaattaaacagcttctgcacagcaaagcaaACAACCAACATAGTAAAGAGACggcctacagaatgagaaaaaag-tttGCCAGCTACATGtcagataaaggactaatatctaa-atatataaataactcaa-agagTGCccct---aaaattaaa-gacccaatcaaaaaatgggcaactggaaaaaaatgggcaactgaaatgaacataTACTTCTca--ggagaaata-caaataattagtaaatacatgaaaaaaatgttcgaTGTTTCTggctatttgagaaatgcaaattaaaataacactaagattccatcttattccagaaagaatgactatcatcaaaaatt

a score=10254
s chr3            17385887 604 + 160039680 AAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACA-TCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA-CTATTCAAAGAATTAACCAA---------ACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAAT
s HiC_scaffold_1 129059242 565 + 233722169 aaacaacagaaTTCACATTCTTAGCAGCAC---ATGGAAGTTTCTCCAAGGTTGAACTCATACTAAGCCATAAAGCATACTTAGGTAAATCCAAAAGTTTCAAAATTATACAATCTA--CTATCAGCTTATGGCACAGTGAaagtagaaatcaatggcaagaaaaaccacaaaaattatgCAAATGGATGGAAATCAAACAGTATTCACTTGAATAAT-CaatggtcacagaagaaatcagggaagCAATTAG----CTCCTAGAGTCAAATGATGATACTAGTACAACA---CCACAAATACGGGACAGGATGAAAGC---------AAGcatgtttatagctgtgaat--------tAACAAATCAGAGTGACTAAAAA--AATAACCTCATGATGCACTGCAAGGGCCCAAACACACAAGGA-------CAATCCAAAAGTTTCACAgtgaatgaaattataaatatcagag------tagATGAAATGGAAACTGCAAAaagcaatataaagaatcaatgaatctaaGATCTCTAAGAGTCagttc-ttgaaagaataaataaaatagacaaaactttaat----cttaccaaaataaataaaaacaaaat

a score=33063
s chr3           17385968 1744 + 160039680 TCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAA-TTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAG------------AGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAAT-TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC---CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA--GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG--ATCCAACAAAGATAGAGAAC--TTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCAT-CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCA-AACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattag---ccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaat-tagggaaacaacacccttctcaatagccac-----aaataat--------ataaaatatctcggcgtg--------actctaacgaaggaagt---gaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaaga
s HiC_scaffold_1 63894708 1658 + 233722169 TCAACAAATTATAAAAAGCTGAAATCATATCAAGTATCTTTTCTGACCGCAGTGCAATAA--------------CACAAGAAAGACTTTAAAAACTatacaaatacatagaaattaaacaaaatattccAGAATAACCAATagattgaagaagaaattaagaaggaAACTTAAAAAATTCTCAAA--CAAATGAACACGAAAATACAACATACAAAAACTTATAGAATACAGAGATAGTAGACAGAGATAGTAGTACTGCAAGGAAGCTTGTAGCAGTCAATAGCTACAAAAAGAAA---GCACAAGCATCT-CAGACAACTTATCAGCAAACCTCAAGGAACTAGAAAAA---TAAGCCAG---GCTTAAGACTAGTAGAAAGAAAGTAATAATAAAG--------------------ACtagaaaaaatagagac-----aaaaaatcaatgaaacag-----------ttttaaaaaac--ataagattaataACCCCCTAGCCTA--TGAGAaagatggggggggggagaacTCAAATGTAATCAGagttgaaataaaaaaggagataatACAATTGAC---------ACACAAGACACAGTCACTAAAGACTTATAAACAATCATATGC-CAACAGATCTT-ACAActtagaagaaatagacaaaatctTTGACATAC-----GTATCTTAAGTGATtcatgaagaaatgagaaacGTGAATGATACTG----------------------AGTTAGTAATAAGGTCTCTCAtcaaagaaaaagccagaaa-aaatgGCTTCATTAC-TAATTTTACCTATCACTTAAAGGAGAACTAATACCAATTC-ACTTAGATtattgcaaaaaattaaaaatgaagaaattctcCCAAACTGATTCTAGGAGGCCAGCATTATTCTGACTCCAAAATCAGATAAGaccattaaaaaaagagagaaaaaagtacaggccAATATTCCTGATAAACATAactgcaaaaatcttcaacacaATATTAGCAAACTGAGTCAAAAGA-------------TTAttcatcatgatcaagtggaattcattc-aaGGAGataagaatggttcaacatacacaaatcaatgtaATATGCCACATCGCACCAATATTATGAAAGATCAAAACCATATAAGCATCTCATTAGACACAGGAAAAGCCCTTGATAAAATTCGATATCCTTTC---ACAAAAACTCTGAGCAAATTAGTTACAGAAGGTATGCGTCTGAACACAATAAAGGTCCCACATAACATGCCCCATAGCTAACATCACACTGAATGGACAGAAGCTGAAACCTTTCTCCCAGAAATTTGGATCAGGACAAACATGTCTACTTGCAACATTTCTATTCAACGTAATACAGGAAGGATTAGGCAGCAGAagaattaggcaagagaaagaaatgaaaggcatccaagttaaagagaaaaaagccaaatTGTCActatttccagatgacatga---tatattaaaaaaacct--aaaatttcaCCAT---ACTGttcaa----ataaacaaattcagtaaaattAA-AGATTCAaaa-caacatacaaaaatcagtagtgttTCTATAAACCAATAGTGAATTAtctaaaaaagaaatctagaaacATAATCTCATTTACAACagctacattaaaaataatgaaacgaaacaaaacacacacacaaaaaaaaaacactctgg-GAAGAAATTTTAGAGAGATATCTAccatgaaaactttaaaattcttatgaaagaaattaaaaaaga

a score=12915
s chr3            17386027 597 + 160039680 AGGCTGATCTTCAATAACAA----AATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACT-------AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC--TAAAGGGCACAGGGACA----AAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA----------CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGACGAAATGGACAAATTT
s HiC_scaffold_1 121849223 588 + 233722169 AAACtgatttttcatgaaaataaaaacaaatatcagTTAAGTGTTATTGA---------TTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGA------ATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTAT-------ttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaattt

a score=35116
s chr3            17386055 1448 + 160039680 ACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGT--GCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC----ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAA-ACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT-----------GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGC-AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc--actttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttc
s HiC_scaffold_1 167392364 1376 + 233722169 acagAAATTCTTTAAACCCatagaaatcaaacaatactcTCTTGAATAATGAGATCTTGGC------------------AGAAATTAAG---TTCTTAGAATCAAATGATTATGTAAATAAAACGTACTAGAACtaatgagacacaatgaaagctgtcctaagagagaagtttatagctgtgaataagcacatcagaaaaacagaatgcgttcaaatgaaataaacttttgGTTATTTCTATCTCAAGACcgtagaaaaacaagaacaacccAAACCCAAAGATAGCATCAGCAAGGCAATTATAAAGACTAAGCagtga--taaataaaattgagcctaaaa-aatta--caaagaatcaatgacttGGACAGCTGGTGCTttgaaacactaaacaaaatagacaaactcttAACCAATCGTATCGAAACcaaaaaagac-----ccaaatcaatacaatgagaaatggaaaaggtgaaatcacaaaagACTGTGCTAAAATCTAGACTATCATGGAAAACTACTTTGAGAATCTgtactaaaaaa----ggaaaattcagaagaaattgaTAGGTATCTAAATACATATGaa----caaagctcaatcaagaagatataaaaatcctgactgATTTAACATctgtcaatgaaactgaaa-----attaaaaagctactaactaagaaaagcccaggtcttgacaAAATCACTTGGCAAATTCTACTAAATTCTACTAAAACTTTGGAGAAGCTCTAACACCAGTACTCTTCAAACTGTTTAACAAAATCGAAAGGGAACTACTACTTCCAAACTAATTCCCAGAAAAAACCATTAACCTGATTCccaaaccagaaaaggacccaaccaG-------------AAACCAAGCTCTTCAATGAACAtttatgcaaaaatcttcaataagatattagcaaacagaatgcaacaaatcatcaaaaagatcataaagC--AATCA------------Ccaaaggatgcagggatggtccaacacatgcaaatcaataaatataacctaccacacaaacagaagcaaagacaaaagtcac-------tctcaagagatgcagaaaaagcacttgacaaaatccaacatccattcataatAACAATCCTGAAGTCACT--GTACAGaaagtctttatttcaatctgttcAAACCTATTCATGACAAAACCAAAAGTCATC----TATTGAGTGAAGAGAAGCTAAAGTTTATTCTG-TAAGATCAGGAATGAGACAAAGATGTCAACTGTCAACACtactgttcaatatagttctcaaaaTGCTGGTCAGAGCAATCACagtagagaaggaaataaaagggatat-tacaggaaaataagaaattaaattattaaaatatttgcagatgacatgatcctctaca-----gatccccaaaacttcaccaaaaaactccta-----gaaaaacaagTTC

a score=13497
s chr3           17386075 858 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAA------------TTCACCCAAGAGGAGTAG--ACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACA----AAGATAGAGAACTTCAGACCAAT-TTCTCTT
s HiC_scaffold_1 77585700 816 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcag-gataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGACAATTTAAT-----ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt

a score=32901
s chr3           17386075 3034 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAA-AGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT-------AGACTC---ACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA-AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAG--------AAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaa---------taaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtat----gataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattc-atctggaataacaaaaaaccgaggatag---caaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagac-actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca-----caggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagatagggga---------------------ctaa---tatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcac----ctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacac--tcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca-tagtactaccggaggatccagca----atacctctcctgggcatatatccagaaga----agccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaa---cagaggaatggatacagaaaatgt--------ggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa--tggatggacctggagagcatcatcctgagtgaggtaacacaatcac
s HiC_scaffold_1 38267598 2854 + 233722169 TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAG-AATGCAGGA-GAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaat-taaaggaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAGGagctagaggaaaaaaaaaatcaaa----cataagag------agggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggtttttaaaaacaaataaatattaaaaagacccTTTATTTATTATTAGAGTTTggattaaggaaaaaagagaaatgata-tagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGG-TGAATTATTTGGCACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATA-------ATGAAACAGGACTTTGGAACCATAATTTAATAATCTCACTGA-AAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaa-tatttcttgaaatcaaagataagaaaatacttgcaaattcACTT-ACGAGGCTAGCATGACCCTGATAAA-AAGGTACATtaggataggaaagaaa-agaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGAATCCTCAACAAAAC---------------ACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGTTA---------TACACAGAAA--------AaccttttcttctaaaatcagaGAGAAGACACGAATG------TTCTCATTTCTATTTCAGAGGAGCAGTGAAAGTCCCTTCCAGAAGAATAAGCATAAAAAATAGGTTAAAAAGCATCTAAAccagaa---agaaagtaaaatggcTCCTATTTGCTGATGTCATCAAA----------------------------------------------------------TCAATGAAGTTGCAGGATA-AAAACTAACATGCAAAATTAAGCAACATTACTACAAACAGACAATGAAGTATTTGAACATTTTGAGCAAGAAA----------ACGACTCTATTGAGTA--cattaagtatttaaaatacttgggaataaattagaaaaatgagcTAAAATATCTCTGTACTCGAGTAAAACC------------AAaaagtaattaaacagaa---aaataaatagaaagatattcaaCATCCATGAATTAG------------TGTAAAAACATC-AGTATACCCAAAGCAACCTACAG--TCAGTATGATTCCTATTAAAATGCCAGTGTCTGTTCTCatagaaatagtaaaataaatgttaacttttaatataaaatcaCAAAAGACTGTGACCAGCTACAGAAA----Tcttaagca-aaaagaacaaaccTGAAGCCTTCATACTACCCGATTCCCAAATCTGCCACCAAATTATTTTaatcaagacagtgtgacacTTGAAAACATTCAG---AGCAGCACAATAGAACA------ATCAGCTGAGAACAAAGTTACACATTTATGGCCAACAGATCTTCAACACAGTA-CCAAGATCA--CAATAGAAAAAA-----CTTCTTTAATAACAATTGCTGAGAAAACT--------TTAATTCACAGAATGAAACCAGACTCTTATTTTGTACAGTATACAAAAGCCAgcttaaaatagataaaagatttaAGCATAAGAAAGCAAACTACTGGA----AGAAAGCAAATAGAAGAAACAAACCTC-------TTGGCATCCTGCTGGGCGA----CTTTGTAGATGACCCCAAAAGCAGAAATAACAAAAGTAAGAGTGGATCAGTGGGATTACATCACATGAAAATGCTCT------GCACAGAACAGTGACAATTA------------ACTAGCAGAATGGGAGGAAGTATTTGGAGATTGTACATCTGATAAGATCAGCACCTTATCAAAAACATCTCTAAATGTACccaaaatacatgaagaactcaAGTTGCTCTATAGCTAAGTAT-AAATAATCTGGTTTTAAAATGGACAATGGA--TAAATAGATATTTTTTGCAAAGATGAGT--TACAAGTTGACTGACGGGTATATAAAAGTGTGTTCAATACTACTAAGTCTAAGGGGTGTGCACATCAAATCTATAATGAGTCACCATACCACTCTCATAGGCACAGTTactatgaaaaagacaaaagacaataaaagttGATAAGGATATGAAGTAAGAGAAACTCTGTATTCCA---TTGGTGGAGATATAAATTGGTACAACCgtcatggaaaacagtatggatattcttttaaaaatgagaaagtacagcTATCACACAGCTTGGCACCTTATACATTT-----GTCTGTACTCATGGGATATGAAATCAGGATGTTACGGAGATGTCA--CTCCA--GTGTTCACTGTGATGTTACCTAAGTTAGCT--AAGCTGTGAGT--TCCATCTGAGACTCAAGAGCAAATAAGCCAACAAATAAGATGGGCTATGAAGATATAAGCATACAGTAGAATATTACTCATTT-CTAAGAAGAAGGCATC-------TTCTTGTGCTAACTTGAAGGAACTTGGAGGACATGATGCTAAGTAAAGTAAGCCAGGCAC

a score=10905
s chr3            17386156 465 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-CATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattc------------------------acacatcag------gaaaacagaacctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacataaattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=34691
s chr3           17386184 1547 + 160039680 ACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCT-AAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC-CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT---------------------------------------------------------------------------AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA-----AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAA----AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagat
s HiC_scaffold_1 44540947 1570 + 233722169 ACCGGCGGGACCCAGTGCAAACAGTCCTGCAAGGGAGGTTTACAGCTGTGCACACCA-CATGGGAAAGGCACAGGGAGCCCGCATAAGTGACCCGATGGTGTTTTTCGAGGGGCCTGGAAAAACAagaaatccaaat----ccaaagctaggacaaggaggaaaattataaagatcgggacagaaatcaatgcaattgagattttttaaaactac----agagTCAACGAATCAAACAGCTGCTTCTTGAGAAGAATAAACCGAAGAGACAAACGCTTAGCCAGCCTTACCCAAAAACGTAAG---AAAAGACCAATCAGTGAacttagaaattaaaaaggcaaaatcaaaaaAGACACCactgaaattcagattattagtaactactt----GAAAACCTGTACACCAATAAATTGGAGGatccagaagaaatggagagattcctaaATACATGAGAATTACCAAAACAgaagtaagaaaatataaaaatcttgaaTAGGCCAATAACAGGTAGTGAAATTGAAgcaataattttgttttggaattctatattatcatttttatccttttttcattttaagatttaaaaaaattgaaacaataataaaaaaaacctaccaaGTAAGAAAAGCCTAGGACCCAATGAATTCACCAGTGAATTCTACAGAGACTTCAGGAAAGATCTAACAGCCACatgcctcaaactcttcaatgacactgaaagggaagcagtacccCCAATGTCATTCC-TGGAACAAGCGTTcacctgattccaaaaccagacaaacagCCAAGCACAAAAGAGAACTACGGACCGATCTCTTatatgaacatagaag-aaaagtTCTCaggaaaatactggcaaacagagcACAACAAGTCATCATCAGAAAGTCGTCACACATCA-GACCAAGTAGGCGCCATCTCAGGG---------TGGTTTGATGTATGCATTTAAATCAATAGATGTCATTCaccacagaaacagaaacaaggatgAGAATCACATCAGCATCTCAGCAGGTGCAGAGAAAGCCTTTGGCAAAGTCCAAAGTCTATTCATGA-AAAAACCtagaagaaaacagatataaaagggctttatctcaatctgat-agagccatctatgacaaaccttaTGCCTACATTATATTAAAAGGTGAGagatt--------tctctctaaaatca-ggagtaGA----------CACTCTCACCACTCCTGTTTGACATAGCACTCAAAGCATTAGCCAGATCagtcaggaaaaggaaagaaataaaaggggta-ggATAGGAAAGGGGTAAGTTAGACCATCACCATCTGCAGATGGTCTGATTCTCTATAAAGAAGGGCC--AAAATGCCACCAAAA-----CTGGTACAGTTAACCAGC-TCAGTAGTGTAGGAGGATTCAAAATGAATACACA-AAACCAGTAGTGTTCCTGTACCTCAACAATGAACTTACTGAGAAGGAAG-TGGGAACCCAATACCATTTCCAATAGCgataaa-aattaaacaca----ggaattaacctaaccaagagaGTGAAAGATCTccaccatgacaactacagtacCCTGAAAAGGGAAATCAAGGAGAATATCAGGAAGTGGGGAGAT

a score=26141
s chr3           17386197 1937 + 160039680 AATGAAAGCATTTCTA-------AGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC----ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG--------AAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTC----TCCCAGCCAAAA---AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTA---GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCA--CAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG----GGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaatt-cttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggt
s HiC_scaffold_1 34237452 1824 + 233722169 aatgaaagcagtcaaggaaaaataaaaagaaatccattATTATAAATGCCC---------AATAAGAAAACCCTCAAATCAATGACCTGAAAACTCTGAACCCTTAAAACATTGGAAAAAGAATGGACTAA---ACCTAAACCAAGTAAA-GGAGGGAAATAATAAACATGAAAGTGCAAATTAATGAAGTAGAGAACAGAAAACTAATAAATTCAGTCAATGAAACTAA-ATCTGTTTGTTTGAAAAAGATAAGAGAATTGACAACTCTGTGACTAgtttgagtaaaa---aaaaataaagaatgctcAGTACTAGAGCTGGAAATAAGAGCAGGAACATTGCTATTGAACTCAGTAACAAAAAGGATTCTAAGGCA--ATAAGATGAATT-----AATGCTATGTTAAT--AAATCAGAGAAC----ATAAAGTGGGAAAATTTCTAGAAGGATAT----TATCAAA-CCATctcaagaagaaataga---tttgaaTGTATCTATAAC-----AGGAAAGGGTGTCAATTATGTATAATCAAAATATTATACACAATGGAAAGCCCAGATTCCCATGAA--------------CTACTAAACACTTAATGAGGA-ATAATATCAATGCTTCAAACtctattccaaaaaaaaaatttaaaggagggaACTCTTTCCAACGCACACTGCAAATCCAGTATTACCTCGAAACTAAAATGAGACAGAGACATCT--------CAGAAAACAACAGATCACTATCTCTTATAAACAGGGACACAAAAATTCTCAGCAAAATACTCATAAACTGAATCCAGCAccatataaaaaaaattataaaccatGGCCAACTGGGGTTTATCTCA-GGATGCAAGCTTGGTTTAACATctaaaaatcaattaatgtaatacaccatatcagcaggataaaaaataaaaaacacatgatcatctcaatagacaaagtaaaagcatttgacaaagtccaaaactctttcatggttaaagaagaaaacaaatcagcAATAGAAGGAAGCTTTCTCAGGTTGATAAAGGACATCTACAAACCTCCATT-GCAAACTTTATATTAAATAGTTAAATACTAGgtgatttctctttaatttcagaTCTAAGAAAGAGAAGTCTGTTCTCATTGTTTGCACTT----------GAACTGGAGGCTTCCAATAGggtaattaaacaa-aaaaaaatttaaaaagcatctagattggaaaagaaaaagtaaaataagctcTATTTGTAGAAGACATGACTCTATATAGAGAAAATCCTAAGGAAGTc-actaaaaattattaaa-ataataaatcccTTCAACAAGTTTATAAAATACTAAATCAATATATATAA-tcagttgtatttct---------gttttaataaactaaaataaaattta--aaaataa-----ttaacaatagcatcaaaaagaataaaatac---------aaatcaacttaacaaacacaaaa----catactgaaaaatACA-----TTCGTAAAAGAAATT----------------GATGAAAGCATAT--CATGTTCCTAGATTAGAAGAA--AATATCAGTAGGAAATCAATACTTCCAAAG-----TTACACAATCAGCACAATTCTCACCAGAATGTCTAGTGGATGATTTTTATAAATCACAAGCTG--ATTCTAAAATCGACATAAAATTCCAAAGGGCTCACACCAACCCAAATTATCATAAAAACTTTGAACAAAGTTGGTAGGCTCACACTTTCTGACTTCAAAACTTACTGCAAAATAACAGCAAC-CATACTGTGTCATTCTTGTGTCAGGGTTG-CATGTAGATCAATGCAATGAATTTGGAG-TTCGAATATGAACCTATGCACCCATGGTCAATTTTTTTCC--CATGGGCACTGAGATCATTCCATGG-AGAAAGACTAACCTTTCAATAAATGAT

a score=16151
s chr3            17386211 864 + 160039680 TAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGA---AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGC--------TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA
s HiC_scaffold_1 187840076 856 + 233722169 TGAGGAGAAAATTTATAGCCATGAATGACTTCATCACAAAAACAGAGTAAGCCCAAATAGATATTTTAACCACACACCTCAAAGTCTGAGAAAAGCAAGAA-TGATTCCAAGTAATAGCCAGTACAagcaagaaaattataaaaaatgggagcaagaaaatcaatgaaattgagacaa-agtaattaaatgaagaattaatcatg-gaaatgttcatt-tttgaaggaataaatgaaatagaaaaatcctTAGGCAGTTTATCCATA----------AAAAAGTCCAAataaatgcaattagaaataaaaatgatgaaatcatAGCGAACACtgccaaaatgaaaaagattatt-gACTATTTTACATA--TCTGGATGCAATTAATTGGAGATTTCAGAGTTAAATGGATACactcctagatacatatgaattctcaaaactgaaccaagaagatttaaaaacactCAATA-TTCAGTAATAGATAATAAAATGGAGGCAGTAATAAAAATACCCTACAAACTAAGAAAACTCTAGGTCTGTAttcattcactgatgaattctcaAAACACTTCTGGTCAAATCTAACACCTATGTATTTCAAGATgcttagtgaaattgaaaaggaaggggTACTCCCAAAGTCCTTCCTGGAAGTTATCAGTACCTcgatttcaaaaccagacaaggacccagtggggggaaaaaaaaagaactgtgtaTCAACTATTTTAATGTAGACAGATGAAAAATTCCTCAAGAAGATACTGGCAATTAGGGCAACCGAT----------CACCAAAGAGATCATACATCTCGACCAAACAGGCTTTATCCCAGGGCCTTGATGATGGTTCAATATAAGCAAATCAGTAAGTGTGA

a score=10790
s chr3           17386413 671 + 160039680 GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAA-ATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC-TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA----------------------------TAGTCT--------CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA----AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATA
s HiC_scaffold_1 95326533 669 + 233722169 gaagaactggttctttgaaaaaat-------------acgCTGTTATC-AAACTTACcagtagaaacagaaaagagactcagatgaaaacaattagaaataaaaacggCAA------ACCAAAACTCTACTGAATCCAGAACATAGTCA----CATCtgtgaaaaattatattccagCAAAAGGTAAAACcttaaaaaatatggaaagatcTTTATATTTGTACAAATTAGCAAAGCTTAGACA--ATAAGACAGAAAATTTTGAATAACGCAAAATTAAGTAGctaaattgaagaagtaataaaactaaaactaaaaaatgtttttaaaaactaacctAGAGAAAGTCCAGCTAAGAA--TCACAGGGCTTGATGAATATATTTCTGAATCCTACAAAAGCTTTATAGATATTAGTTATATCAACATATCTCTTCAAATTGTTCCATGAAGTTGAAA----------------CCATGCACTTTGTAGAAGCCAGCATCTGTCTGATCCTGATACTTAACAATGAccccacaaaaaaggaaaactatattcCAGTCTCCTTACTGAACATGAATGCAAAAATCCTAGAAAATATATTAGCTAACAGAATGAAACACATCATCAAAAACGTCATAGGTCAAGACTAAGAAGGTTTCATGCCAGAGTTGCCAGGATGAGTCAGCATATAAAAA-ccacaaatgtaatacaccaca

a score=64417
s chr3            17386434 2678 + 160039680 AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA------TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATAC-GAAAATCCATCAATGTAATC----CATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacg--aaggaagtgaaagatctgtatgataaaaacttcaagt-ccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaac-tcaattcttcaacgaattagaaggagca-----------------------atttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaa-----tagaat---tgaagacccagaaatgaacccacacacctatggtcacttgatcttcga-caagggagccaaaac----catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctt-----tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctc--------agaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctgg-cggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacaca-atcacaaa
s HiC_scaffold_1 101526179 2603 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaa----------gaaatgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggta--taataaaaaaaataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaaccagacaaaga---------------aaaCTGAATGCCAATTTCCTCAAAGAATGTAGATG-GAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaaaa--taggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACCTAGAACAGTCAGGCAAgtgaaagtaataaaaagaatgtgtataggaaaggaagaagtcaaattgttCTTATCTGCAGATGACAGGATCCTCTATATAGACTACCCAAGAAATTCCACCAAAAGTCTCCTACA----ATAACCAAATTTAGAAATGTATCAGAATACAAAATTAgcacaaa-aaatcaataacattcctgtacatcaataatgaattcactgagaaagaaattaggaaagtaACAC------TAAtaacatgaagaaaaattaaatatctaggaattaacctaactcCCCAAAAGTGGAAGATCTCTACT-TGAAAACTaccagtactctgaaaaaggagatcaaagagaacatcagaaaatggaaagatatttcctgTTCCTGTATAGGCAAAACTAATAGTGTCAAATGTGCACTTTCTTCAAagctgatatatagatttaatataatcctaataaaaatatcaatatgtatccctcacagaactagaggaaaaaaaaaatcttaaaattcagaaaacaatcctaaattcatatggaaccagcaGAGACTccgaatagcaaaagcaatcctgggcagcaagaacaaagca-------ggaggcttACAACACTCACCTTCAAGTTACATTaca-agctacagtgataaaaacagcaaggttttggcacaaaaacagacatgtagatCACTGGAACCCACTAGAGTGTATGAAGAC----AACTACAAGCACA-----ATTGCTATTTGAGCTTTGACCAATGGGAAGAAAACATAACATTCTTTggaggaaagataacctctttagcACATGGTACTGAGAAAACCGGCAAT--CCATATGCAAAGCTG------gacctatatctttcaccatgtactaaactgaaattAAAGTAGATCAAag-gctaaatattaaaacagaagcccTAAACCTACTGGAATATacaatagataaaactcttgaagtcattgttgtaggcaaggactttttgAATAGAACACCAGTTTCACAATAAATAACATCAAGagtcaacaaatgagattattatatcaaataaa-----aaagt-------aagcaaCCAAC---------------AAGAGACAACGTACAgtatgggaaaatttttttttgctagctattcc---tcagacagaggacaaaTAT-CAATA-ATATGAaggactcaaaaaaatcagactccccaaaataaaagatcaaattaa------aaaaaatgggaaaCCAAAATAAACAGACACTTCTTA---GAAGTATA---AGTGgccaaaaaatacatgaaaaaaaagttcaacatctctGACCACTAGAGGAATGCAAATCCAAGCTATACTAAGAtcctatcttactccagaaagaacggcaatcaccaagaaatcaaacaataacaaatgctggtggggctg-agTGAAAAAGGAGTCCTTTAACATTGCTGGTGGAAACATGAACTAATACATCCCTTATTGAAATcactatggaaaatatttttaaaaattaagaatagtaATTCTATTTGATCCAGGTAtttcccttctaagtatcttcttaAAAGA----------gctaaaaacatcatat-----------tttttAGCAGCAGAATTCATAATAGCTATTCTTAGGAAGCAGACTATGTATCCATGAATGgatgaagggacaaagaaaatgtatt---tttacaaagTGGAATAATATTCAactttaaagaaggataaatttgagacatttgtaggaaaatggatacgcTTA------AgcgtgttaagtgaaataaatcagaacacAAA

a score=59407
s chr3           17386447 2717 + 160039680 GATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAG-----------TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAA---------------------------------------GGTATTCTACCC--------AAC---------TCATTTT-------ATGAAGCCACT-----------------------------------------ATTACTCTGATACCTAAACCACAGAAAGATCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAA-GACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCA-CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaa--agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaac---ttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac-cgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggct--------------aagatcaaaaattcaggtgacagcagatgctggcgaggatgt-ggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggta----agaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaag---gaactcacacaatatgtactcactgataagtggatactagcccaaaaccta
s HiC_scaffold_1 64169318 2774 + 233722169 GACAAATCTCTAACTgatcttaccaaaaaagaaaagaa--aaggccaaATAAATtcaattacaaatataaaaggcaaaatcacaataaACTTTGCTAAAAGTTAGA---TTGTTAGTAACTTCTCCGAGAACCTGTTCTCTAAAGAAacggagaattcagaagaaaca-aCAGACGCCTACTTTGGTATGAATGACCAAAGCTGAtgcaagaagatataaaaatcatgaATAATCC---ATTAGATAgtgagatgaaagaagaattattttcttcttttttaacctttcaactaagaaaagcccaggtcctgatggattcactgatgaattc------------aggAAAGTTCTACTACTACCAttcctcaaactatttaatgaaattgaaaggaaataagTACACCCTATAAATGAGGTGTATATACAATGGAGGAATACTCTTCTCTAAAGAACAACAGGTTAcagccatttctaggaaaatggatgcactttcagaccataatattaagttaaGTAAATCAGATGGTTGACATTGCCAtcatttcaaaatcagaaaacaacccaaccaaaaaaagagaactttagcctaaactcttcaatgaacATAGACCAAAAAAGTCTTTAACAATCCACTAGCAAGTATCattcaacaaatcatcaaaaaaatcatACATTGTGCCCAGATAGGATTTATCCCAGGGTAGCAGGGATGATCCAACATAGACAAATGAACAGATGTGATACATCACATTAACAGAAGCAAAGGACAAAAGTCGCATGCACAACTCAATTGAAGCAGAAAATGCCAGTGATAAAAtttaacatccattcatgataaaaa--ctgaagaaaacaaacataGAAGAACCATATCTCatc-tgataaaagacatttaTGGCAAACCTACTCTCAAGATCATATTAAATATGGAAAAGCTgaagatttttctatttaaattcagAAGCAAGACAAGGATATTAACTACCATCATTATTGTTCAATATAATTCTTGAAACTATAGCCAGGAGAATCATCCCagagaaagtaataaaaaggCGTATGTGTAATTAAGGAATAAGTCAACTTAACATTATTTGGAGACGACATGACCCTCTACAT-AGAAaccccaaaaattccatcaaaagactcctagacataataaccaaattcagtagcatagagggatacaaaattaacacaaa-aactcagtaatattccTGCACCCCAATGataaactcattgagaaagaaattagag--ataacacttttcacaatatcattgagaaaaattaaaca--caggaATTAATACAACTATGGCAGGGAAAGACCCTTATAGCAAAAATTACAGCACTCTAAAAAAGTagagattgaagaagacatcataaaatggaaatacatctaTGGTTCATagataggcagaatcaatatagtcaaaatggtcatactcctgAAACTGTTAAGTAGATTTATTGAAATCTCAATTAAAACACTAATAGCACTCCTCacaaaactacagaaaacaatcctaaaattcatttggaaccagaagagacctagaatagcaaaagcaatcttgggcAATAAAGACAACGCACAGGGCAACACAATCtc---cttcaagttatactacaaaggtacaatgatgaaaacaaaaca--attaacacaaaaacagaca--tggtTTAATGGCATAGAATATAGGGTGCAGACACAACTCCAGGCACTgtcagctatctgatctttgaccaAAGAGTCAAAAATGGATGCTGGGGGAGAAATAGCCTTTCTAATAATTGGTGATGGTA-AACTGGTATCCATATTGCATAAGATTGAATTTAGATCTGTATCTctcaccacatactaaactaaaataaaaatgtatcaaag--------ataaaactatgaaaacagaaacatttgatGTACTAGacaat----aaaactcttgaagacataggcataggcaagaacTTCCTGAATAGAACCCCAATTTCACAAGAATTAACACTAAGCATCAACAAATTGCATC--ATCAGATTAAAAAGCTGCTGTACAAAAAAGGGAACCATCAGCAGAATGAACACACAATCTACAAAACAGGAAAA----TTTA-CTATTCT---TCAGA----GGACTAACATCTGGAATACACAAAGCAATCAA-AAATTAGATCCCaata---taaaagacccaatcaCAAAATGGG-----TAACTAAATAGACACtccaca---gaagaaaatacaaatggccagtaaatacaCAAAAAGACGTTCAACATttctgatcattagagaaatgcaaattaagacaacac--agATTCtgccttactccagaaagaatagctttcatcaaaaaaaaaaaaaaaaaaaaacactagataACAAATGCAGCTGCAGCTGCAGGGGGGAAAGGAtcacttcttcattgttggtgggaatgtaaactagtacaatcattgTAAAAATCTGTATGGAGTttcttcaaaaaactgaaacaaaattctaAT---TGGTCCAGCTATTgcctttctaggtatctttctaaaag-agttaaagacgttatattacagtgacacatgcataacTATGTTTGTAGTAGCACACTTCAAAATATCTCAGTCTTGGGAGTAAATTAGGCATTCATCAGCAGATGTGTGAGTAAAGATAGTATTGTATTTATTCATAATGAATTATTTCACTGCCATAAGGAAGAATAAACTTACatcatttatagggaaatggatacaacttgaa---ttTATGTTAGgaggaataaatcagacacacaagttgaaatcatgcattgt---ttctcttatatatgaa----aacccaaaatata

a score=35801
s chr3            17386495 1232 + 160039680 ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACAC-ATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaa
s HiC_scaffold_1 211124554 1169 + 233722169 atcaactaaa-caaaaatgaaagaggtgaaataaaaatgaacactgcCAAAATCCAGGAACTTACTGGGAAGTACTCCACAAACCTGTATGTCAAACAACTGGAGAACTCAG----------TATAGtactagatacatataaattgaCAAAACTTAACCAAGAAGCCTTAAAAATCTTGAACAATGCCA---------ATgaaattgcaaaa-----caaaaacctaccaACTGAGAAGAGCCCAGGACCCCAAGGAGTCACAGCTGAATTCTGTAAAAC-TTCAGGGAAGAT---ACtcct--------caaatttttaaatgaaattgagagggaagcagTACATCCAAAATCATTGTAATAAGCCAACGTTATTCTGATCCTAACACCAAACAAGGGTCTAACCAAAA-AAATACTTATAagccaatttctctaatgagcatagatgtaaaaatctttaa-gaaatactggcaaacagagtataaaataattatcaaaaagatcacca----tgatcaagtaggctTTATCCCATGGATGCAGGAAggattcaacacatgcaaatcaataaatgtaattcatcacttaaacagaagcaagaacaaaaacagcatgaccatttcaatagacacagaaaaaacctttgacaaaatccaacatccattcatgataaaaaccctaaagaaaataggtatagaaggtCTGAATTGAAACATGATGAAAGCCTTTTATGACAAACCGACTACCAACATCACAGTAAGTGAGGAAAAGCTGAAAGCTTCCCATTTGAAACCAGGAAC-AAACAAGGATATCTATTATTACCACTCCTGTTCATTATAGTCTTTGAAATATT----AGAGCAACTGggcaagaaaaaataacaaaagggatTCATAGAGGACAGGACAAAGGCCAtacatcattatttgcagaagatatCATCCTTTCT-TATAAGACCCAAAacattccaccaaaagactcctagaattgataactaaattcatcagtgtagcaggatacaaa---aacatacaaaaatcagtaatattcATAGACCCTAATAATGAATTCACTGAAAAAGAAGTTAAGAAAACAAtgtcattcacaatagcatca---aaaattaagtattttggt---------attaaggaagtaaaagacctctacaatgaaaatgtcATCAGaccaaaaaaggaaattgagaaggatatcaaaaaatggaa

a score=35979
s chr3           17386544 1902 + 160039680 AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCA-ACAAAACTGGAAAA---CCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAA----GATCAGGAATTCAA------GGCCAA------------------------------------------------------------------------------------------------------------------------TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctc----cttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatct
s HiC_scaffold_1 55056159 1708 + 233722169 AAGTCCAAATCTCATTCAGTATCTTCTAC------CTATCCTTAGATAAGACTCAAAAAGTCTCTATAACAGTTG-------TTGTGAATACATATCGcttaccaaaaccaaaccaaga-agACTTAGTCTTCTAA---------------CTAAA------------------------CTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAACTTTAATGAAACTAAAAGGAAGAGAGGACCC--ACAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaac--------------------------------------aaatcaacaaatcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaac--ataatagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTG---ATTACCACACAGGGAGAC-TGAGTCGGCAC-TCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattct

a score=12448
s chr3           17386561 1391 + 160039680 AGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA--AGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAG------GCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa--actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacct
s HiC_scaffold_1 45014870 1015 + 233722169 AGGTATTTTTGTTGAAAATTGTATGCTAATAAATTGGAAAATCGAGACAGAATAGACAAGTTTCTGGACACATACGACCTACCAAAATTGAAC----ATAAAA------ATCTGAATAGATTAATTT---ATAGGTAACTTAAATCAGCAATTATAAGCCTCCCAA-CATAGAAAACTCAGGAC--------TTTAGTATTGAATTTTACCAAAC------------TTTAACCCCAG-CATGTGCAGATTATTGCATAGAattgaaa-agaaatcatttaa---aactTGTACAATGAAGCCAGTATTACCCTGGTGC------------------------------------TAAGACCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCAGAG---------------------------------------------------------------------TAAATTAGTTATAGAAGGATC---------------ATGTCTCAGCATAATAAAGGCTACATATGACAACCCA-CAGGCAACATCACCCTGAGTGGAAAAATG--GAAAGCACTTCC-CTCAGCCCGGGAACATGGCGAACGTGTTGTCGCTCACTTCTCTTCCA------TAATATGATGGTAAAAATTTCAGCCAGAACAGTTGGACAAAAAAC----ATGATAGACATACAAATAGGCAAGGATGAAATCAGATTGTGGGTGTGTGCAAATGGTATGATTCTTTACACAGGAAAAGCC-AAGGCTCCGTTAGAAGACGACTGGAATTTATAAA----TGCAGCAGAGCAATAGGACACGGCAGTAGCATTCCGAAGCCAGTGGCTTTTCTGTTCACCGGTAATGAAT-TGCTGAGAAATAAAGCACGAACGTAATCCAATTTGTAGTAGCCACAAAAGG---AGAAATTCTAGGAATAAACTTAACCGAGGAAGTGAAAGGTTTCCACAATGAAAACCATAAAATTCTGAAGAAATAAATTGAAGGAGAC----------------ACTTCTCGTCTTTATGGATTAG------------------AATAGTTAAACTGTCCGTAGCA--CTACAGATTCAGTGTGATCCCCATCAAAATATCGAC---ATTCTTCGTAGAACTAGAAAAAGATCCCTG-AAATTCACATCGAACCACAAAAGGGCTCAAAGAGCCAAAGTAGTCTtggaaaaactaacaaaaaagttGAAGGCATTAAAATACCTGATTT

a score=21758
s chr3            17386610 694 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-------------------------GAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
s HiC_scaffold_1 111277613 723 + 233722169 aagtcaaaagactactagatacatatgaattaccaaagttgaatcaagaatatataaaaattctaaataactcaatatcaataAGTGAAATtagagatgtaattaaaaacctatcaacaaagaaaagcccaagccctgatggattcactgttgaattctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcgaagaCTTTATatgactacttctcaaactctttaattaaattgaaagggaagtaacaTTCCCAAATTCCTTCCTGGAGACAAGAATTACTCTGATTCTAAACCTAGAGAAGAACACAACTAATAAAGAGAATTGCATGCTAAATTATCTAATGAACATCAATGTAAATGTCCTCAATAATATACTAGCAAACAGACTGTATCGAACTgtcaaaaagattgtacaccattGCCTAGTGGGATTTATCACAGGGAtacaaggatgattcaacatgc-aatatccataaatgtaatgcatcatattaacagaaacaaggacaaaactTATATGATCAactcaagagatgcagaaaaagtttttaataatgtTCAGCATCCAttcgtgattaaaaaaaaaaaacctacagaaaattggagtagatggtcatTGTTTCAACCTAATAAAAGca--ctatgacaagccaacagccaacatcatactaaatgcacaaaaacttaaaacttttcctctaaaatcatgaacaagaca

a score=31965
s chr3            17386682 2017 + 160039680 CCATATCCCCTAAAGAAATAGAAGCAG-TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT---GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGA--AGTAGAAGGTA--TTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA-TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtga----ctctaacgaaggaagtgaaa-----gatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggg-aaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaat---gggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaaca-gactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcag--aaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaa
s HiC_scaffold_1 122040671 1899 + 233722169 CTAGATcacaaaaagaattagaaaaaggtTATTATTAAT-----AAGGAGAATAAATCAGGAATCTAAAATCTCTGGCCAAAGAAAATTCtatcaaatatttgaagaaa---tagaacCAATTCt---caaacttttccaaaatatagactaggaaaaaataagtacattttgATTCTTCCTATGGAACCGGCATTACtatga-aatgaaagcaaaaaaaaaggcaTCATA---ATAAAACTATAGAACAATATTCCTTATGAATATCTGTgggaaaattctcaataaaatact-gcagTCTGAATTTACCAGCATATTGAAAACATGATACAGCTTAAACAAGTGGCATTTATTTTTGGAATTCAATGATGGTACAGCATATGAAAATCAGTCAGTGTAATGTGTCCCATTAacagaatgaaggggaaaaaatcacATGAAGATCTTACTTGAGGCAGAAAAGGCattacacaaaatgaaatactcTCTCATAATCA---------ACAGCATAGGAATTGGAAGAGAATTACCTCGACTTAATAAAATCCATACAT-GCAAAATCACAGCAAACATTACATGCACTGAGCCAGGACTGGAAACTTTTCCTCTaacatcagtaaaaaaaaaaatct--ccagtttttattt--cttttcaatatagtactagaagtttTCAAGAGagcaattag------gaaaaaaataaaaagtaccaaGATTGACAAGGAAATAGACA---------CTTTTATAGATCATACGATCTTACAGAAAATT----CTGGCATTTCAAATAA--------TAcagataataaata-----aacaaagtagtAGGATACCAATTCAACACACAAAAACCAGTCGCATttgtaaacaataaaaatgaactacctacaaagaaaattacaagaataatttcattt-------------ataatata-----------cGTAAGATTCactagcaaaagaaataatataatgaaatagtataatgaaaactacaaa-cattgctgaca-aaattttaaaagacataagTAAATGAGAACACAGCTCATGGTCATGAATC--TAGACTTAATAATCTTAAAACATCAGCATTACCCAAAGCAATGTATAGAGT------------TGTCAAAGTTCCAATGAGGTTttatacagaaacagaaaaactcatactcaaattcatttaaaatttcaagagACCCTGAATagtcaaaacaatcttgaaaaaagACAGAG---CTAGAAGATTCGTATTTCCTGATTTTGAAACTTACTATGAAACTTCAGTAATCAACACAGCAAGGTACT------GACAAAGGCAAGCATATTAATTGAGCAAAACAGA--GCCGAGAAATAAACCTTTATATGTATAGTAACATGATTTTTGACAAGT--GTCAAGAAAATTCAATTG-----AGAAAGCTGTTTTGACAAGAGGTGCTGGGAAAAATGACTACCCactcacaaaagaataaaatcagattCTTGCCTAAtaccatatataaaaatttactcAAAATAGACCAAAGACCTAGATGTCAGacccaaaactataaaatttttagaCGAAAGCATGGGTCCAAAGCTTTACAACACTGGGTTT--GGCAATGATTTTTGAGTACAATCCCTAAGGCACaagcaacaaaggaaaaaaacaaaaaatacagagactca--gaaattttaaaact--tgcacATCTAAAGACAATATCAATAGAGTAAAAGGGCAATGCACgtaattaagaaaatatacataa--atcataCATCTGATGAGGAACCGGCATT-----------GAGAACTCCTTAA-----AACTCAGTTGCCataaaacaatccaaataaaATCCTGGACAAGGACTTGCATAGATATTCATCCAAAGAGGACAGACTACTGACCAGAAAGCACggaaaaagatgttcaacattgTTAATCACTAGGGAAACGCAGGGCAAAGCCATAATGAGACACCATAATACACTTATTATGATGGTCACtgttaaaaa

a score=27219
s chr3           17386714 1946 + 160039680 AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG--AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGT--------AAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaa-agaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaac---tcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaact---tcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatt-aaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa-actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacc-cagaaatgaacccacacacc-tatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccat--acttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaa---ctgaacaaagaattctcacctgaggaataccgaatggcagagaagcacc--tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
s HiC_scaffold_1 56820437 1808 + 233722169 AAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaa-ataggaaaatctcCCTACTTC----TATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaagaagctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActcactattaaaaaaaaaaaaaactagaagctTTTTCTCCAA----------------------------------TGACTGTTTTAATACAATTTTAGAAGTTCCAGCCTGGTTAACTag-caagaagacaaaacaaaaagacatctaaattagaaataatggaagaaaaattatCTCTATTAGCAAATGATGCAGTTTTACATGTACAAAACTTCAAAGCTTTCACAAGAAACCTA--AGAACTGGTAAATGAATTCAGC-AGTTCACAGGATATAAAGTAAACATGTTAA--AAATCAGCTGTATTACTGTACACTAACAAAGgataatctgaaaaaaataata-tgacaCAAT-TCATTTAGGgtagcatcaaaaagaataaaatactt--------------------aggtgAAAGACTTATGTGATAAAAAACAGGCAAAATTgttgaa-----aaattaaagagaaagtaaataaatggaaaga-catccatgttcatggattggaagattTAATATTGCTAAAATGCTAGTGTTACT-AAAGTTAGGTACTAGTTTAAAGTAttccttattaaaaattttaa---aatgccaatgagaaactgaaaaatccaTCCCAGAATTCATCTGGAATCTCAAAGCACCTAAGCAGACAAagtaatattgaaaaagaaaaacaaa------gagatttcACATTTACTGCCTTCAAAACTGACTGTAAAACTCCAGAAACCAAAACGGGTTGTTATCgggactcacacacaca-------cagtggaataAGATAGGAACCCATAGAAAAGCATTCATGTACTGTACAGTTAACTTACTTTAgataaaaggg-------------------gaaaggaaactATGTCAGCAAATGTTGCTGGGAAAACTGATCAT--TCACCTACAAAACGACAAATTGACCTGTCACCTTACAACACTGCAACAA--TTaattcaaaatagataaaaaaaatctaaatgcaacagataaaactacattttttataataaaataaggtGAGAAAACTTCATGAGTTTGG------------ATT-----------TGGCAATGATTTATTTCCTACGATGTCAAAatcacacaagagaaaaatttactACATCAAACTTAGCAATCTCTGCACATTAAAGGGTGCTATC-ATCAGACTAAACATGCAAccacaaaatagaagaaaatatttgcaaatt----gtcTAGTAAGGGATGAACATCTAGAATGTA----------AAATCGCTAcaactcaaaacaaaagaaaacccaagTTAAAGATGGG---CAGAGtgcttgaatagacatttct----taaaGAAGACAGACTAGAGGTCAGTTATCAATGAGAAGATCCTAGATGTTGCTAATCATTAAGGGAATACAAATCCTGACCACCATGAG

a score=30599
s chr3            17386757 1072 + 160039680 GTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCA--GTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCAC----------------------------TATTACTCTGATACCTAAACCACAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGC---TGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcg-acaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatc---------tcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaa-attccaac
s HiC_scaffold_1 100235787 1071 + 233722169 gtacagACCTCTACAAAAATTTTAGAGAAGACCTGATGccattattttttaca----ttttcctgaaATCAAAAGGGGAGGAGTACTTTGAAAGTCAtgtcctggaagcaagcattactcagATACCAAAGATACCAAGTATTACccagataccaaaaccagaaaaaggaccCAACCATAA--AAGAACTGTGGGCCAGTCTCTTTAATgagcataaatgcaaaaatcctcaataagatact-gcaaacagaatgcaacaagtcatcaaaa-agttatacaccatgaccaaatagtATTTGTTCCACGGATACAAGGATAATTCAGtttgtgcaaatcaataaatata--ccaCAATACGAGCAAA------GACAAAA-CCATGTGatgatctcaatagatgcagaaaaagcatttgacagaattcaacatccattcatgataaaaactctaaagAAAGTTGGAATAAAAGATCTTTTTCTCAATCAGATAAAAGTCATCTCTAACAAGCTATCAACCATCATTATAGTAAATGGAGAAAAGCTGAAACCTTTCATGGTACAATCAGGAATAAGAGAAGGATGGTGCCCACAGTTGCCAGTATTGTTCAGTACAGTTTTGGAAACATAAGCTGGAGTGTttagcatagtgaaaaaaaagaaaaataatacagacagggaggtaaatatttaaattatcattttttactAATGACATGATCCTGTACATAAAATACCCAAAAAATTCTACCCAAAGACTTGTAGAATTAATAACCACAATTggta--------ggatacaaaatcaacactcaaaaatc-atagCGTTCTTGTACACCAATAAcaaa----ccaagagagaaattacagaagcACCATGGTTCACAGTAG---CAAGAAAAATTGAATACTTACatattaacctaaccaaggaagtgagcaaattttacaatgaaaactatagtactcttaaaaaaaaaagagagagagattgaaaagaaatcagaaaatagaaagctaTTCCATGTTCCTGGGTAGGCAAAGCC--CATAGTGAAAGTGGCCACATT-----------TatgtagatttaatgcagtcccactCAAATATGCCAAC

a score=44035
s chr3            17386772 1893 + 160039680 AGACCTTCAAAGAAGATCTAACTCCAGTTCTGCA-----------CAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATC-----------------ATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatgg--ctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaa-----------ctgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagga-gaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatcttt--acctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaa---------------------------atcaaata---------------------accccctt-----------------aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac-cctgagattcc
s HiC_scaffold_1 159886302 1846 + 233722169 aaaactttaaaggagATCTAGTGcc---tctatatagaagaccttCAAACGctttaatgaaatcaaag-ggAAG-----------CAGTCATTCacagaagcaagcattaccctgattccaaaaccagaaaaggacccaaccaaaaaggaaatctACAGTCCAATTCTTCA-atgaaaatagaagcaaaaatcctcaatactaTATTGGCCAACAGAACATAGCAAGTCATTAAAAAGACCCAGTAGATTTTATAGCAAGTCATCATGACCCAGTAGATTTTATTCCAGGGGTGCCAGAATGGTTCAATATATACAAAT-CAGTAGTGTAATGCTCCATACAACCAGCAGcaggaacaaaaatcacatgatcatctcaacagatgcagaaaaaaccttcaacaaaatccaacatccattcataataaaaagcaTGAAGAAAACAGCTAAAGAAGGCATGtatctcaaactgataaaagccatctatgagaa------agCACACATCCTATTAAATGGAAAGAAGCTAAaatctttccctctaaaattGGGAACAAGATGAGGATGTCTGCTATCACC--ACTCATTCAA-ATAGT-CTCAAAACATTAGTTAGAGCaattaggaaagagaaagaaataaaaggaata-----tggatgggaagaagttaaattattattttttgtagacGACATggtcctctacatagaagaccctaaaaact-caCTAAAGtgctcctagaattaataaccaaattcagtagtataacaggatacaaagccaacactcaaaagtcaatagcattgctgtacgccaataataaactcaccaaaagaaaaactagagaaataataccttttacaatagcatcaagaaaaatgaaatactcagcaATTAACccaaccaaggaagtgaaagatctctacaatgaagACTTTAGAAACTTGGAAAAGTAGATCAAAGAGGACctaaaaaaat------------------------------------atactgaaaaaaaagaaagagctttcaaaaaaaaaaagaaag--------------------agctttca---------------gaactagagaaaataatccttaaattcatatggaaccagaagagacctagaatagcaaaagcaattctgggcaacaagggcaaagCAA-------GAGCACCACGATCCTGGACTTCAAACTAAACGACAAAGctgcagtgattaaaaaaaaaaaaacccagcatggtatt--taaaaaaaaataaaaatagacttaTGGAACATAATGAAACAACT-----TCAGGCcactcagct------accttatttttgacaa--------------------agaggaaaaggagcCTTAT-ATCAAAAGGCTCTGGGAAAAGTGGCTACCCACATGATAAGGGTTGAAACTACACCCTTAACtcccaccatgcactaaactaaaattaaaatagatcaaaggtctaaataatagaacagaaacaat----ctgctggaagacaaaaacagataaaattcttgaagacacagacataggcaaagattttctgaacagaGCCCTGGTTacataagaaataataccaaaaatcaacaaatgggatcacatcaag-tTAAAAGCTTCTGAGCAGCAAAGgaaac-------acagtgaagagacaacccacagaataggaaaaaattttgcAAGCGAGTCT---CCAGACAAAGGGTTAATGTCTAGAATAtagtaagaatgaaaaaaaaatggtcccggggatttagctcggaggcataagcacctggtatcaaacatacgcacacacacacaaatggacCTCCCCAAACTTAGATTTAatcaaaaaaatgggcatctgagaagaatagaCGCTGctcagataaagaagtataaatgccaaaaaaatat---gaaaaatgttccacattgctggtcattaaagaaatgcaaattaactcAATGCCTGGTGTTCC

a score=40142
s chr3           17386777 2333 + 160039680 TTCAAAGAAGATCTAACTCCA---GTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC--CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaat-aatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg------------tatagagacagacaa-----------------------------------------------------gtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctg---aacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga------cctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtac----------------atctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcaca
s HiC_scaffold_1 71824309 2160 + 233722169 TTTATAGACAATATAATGCTACAGGTTCTA---AAACTctttaacaaaattataaaagatgCAATACTCTCAAATTCACTTCTAGAGACAAATATTATCATGATATCAATACCAGGAAGAGAtctacaaccaaaaaagagatcTACAGGCCAATGCTCCtaatgaacatcaatgcaaaattcctcaataaaatactagc-aaacaaatgcagcaaatcatctgGAAGACTACACACCATGACAATGAAGGATTCATTCCAGAGATACAGGGCTGGTTCAGCATATGCATATTGGTAAATACAAAGAACCATATTAACAGACTCAAGGACAAAATGtaacacgatcatctcaatagatacagaaaaatca-tCACCAAAGACCAAGAttgattcatgataaaaatgctaTGGAACactggaacagatggtctttatctcagtctgataaaagccatctatgacaaaccaacagtcaacaccATACTAAATTTC-AAAGCcagaaagctttcactccaaaactaggcacaaaacaaggacatCCA-TTACAACTGAACTTATTGAAAtggttctggaaactttagcaagaggattgaaacaaaagaaagaaataaaaggaacaaggacAGTAAAGGAAAGggttaaatgatcattatttgtggatgatcTACTTCTCTACATAGAAAATACCCAAAACTATATCACACCATtggtagatttaataaccaaattcagttga-TGACAGTATATAAGGGTAACAATGAAAAATCATTGGTTTTCCAGTGCATAAATAACCAATTAACAGATAGA-AAATTATAGacataacacctttcacaatagcagcCCCTCAAAATGAACTATATAG----Gactcaatctaacaaagtaaaatatttttacattgaaaactt---gTATTTGAAAAATGAGATCAAAGTGGATTTTAGAAAATGG--AGATACCCATTTTTCTTGGGTAGGAAG--TCAGTACAGTGAAAATTGTCAGGCTTCTAAAATTGCTATGCTGTTTtgatgcaattctgatcaaaatatcagtaccatatctcaaagaattatagaaaacaattctaaaatatattcagAACTAAAACAGAC---------CAAAAGCAATGCT-----GTAAAGGTAAATCGGACTGCATCATGATCCCTGACTAAA------ATTACAcaatggtactggcaaaaagaagaagaaaaaggaggaggaggagaaatacaaacaaacaaacaacaacaacaacaaaaaaaaaccaagcaaataaaaaatgcaaCTGAGGACTGAGGATTAATGAAactgattagaagatgtagaaacaactccagacagaGTTAGTCAACATATCTTCAACAAAAGAGCCAAACACgatcactgaaagaaagacagattCTCTAATGAGTGGTGCTGGCAAAACTAGTTTTCCATATTCTGAA-----------GGTTAAAACTT-TCACCTTGCACTCAGCTACAATTTAAGTGGGTCAA----------ATACATACAGAAATCTTACATTTGCTGGAAGATAGAAGAGGTAGAACTCTTTAAAACAGAGGTGtatgcaaagactttatgaaaaaaaaaaaaacaatcacacaaaaaacatcacaaagaattaagaattgagatctcatcttaataaaact------gttttacacagcaaaagaaagcaccaacGGGGTGAAGAGACAACTCATGGTGTGTGAAAGAGT-TTTGCTCAGTCTTCTTCACACAGAGGACTAGCATCAAGaatgtaaaatgaattttaaaaagcagaactc------ccaaataa----------------------------------------------------------------------------------------------------------------------------------------------------------------------ataaattcag---------------tgcaAAAATGTGTACGAGAAATGAGACTTTCACCATTGTTGGTAGGAACacagactagtgcaacca--ctgaaAATCTgcgtagagattcctcaaaaacctaaaactagaaattccatttgatccatcCATGCCACTTCTTGGCACTTTtgctaaagaaat-----------aaaagcac-taCGCAGATCTATTTTTATAGTAGCATAGTTTGTACtacataaatcttggaaacaacccaaatgaccatCAGTGGGCGAATTTATAAAGAacttgttgagctctttttttttttttttttttgatagtgaagtactactctgc-attaagaaggataaactggagacatttctagtcaaacggatgcaccttgaaaccacacttttaaattagataatttggacaca

a score=26475
s chr3           17386785 1349 + 160039680 AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGAT----------------GCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA--CTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactccta-aacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaagg----agcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgt-----gataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagg--------gagccaaaaccatccagtggaagaaagacagca-------ttttcaacaattggt
s HiC_scaffold_1 22270377 1298 + 233722169 AGATCTAATACCAATCCTCCTCAAACTCTtgcatgaaattgaaagggacagAGAGCTGCCAAACTCATTTCATAAAGGCAGCACGATCATAATAGTAAAGCCAGACAAAGATTCAACAACAA-AGAAAGCTGTAGGCCAGTGTCTTTGATGAACATAGATCCTTAAGGAAATTGTGGCAAAAATCCTTAAGGAAATAGTGGCAAACAGAAGGCAATAGATCATTAAAAAGGTCACACATGATAACTATGTTAGCTTCTTCCCAGGGACGCAAAGACAGTGACACAAATGTAACT-GATAAATGTAACACATTGCATAAAGACAATGATGGGTCAAAATCACAAGATCATCTaaatagttgcagaaaaagcctttaaaaaagctcattat---tttatgattaaaaaccaaagcaaaataaatgcagaaagaccttatctcaaactgataaaagtcACTTATGACAAGCCCACAG--------ATACTAAAAGCATAAAACCTGaaattattctctttaaaatagggAAAGTGAGAGAAGGTTGTTTACTCTACCCACTTCTCTTCAATAGAGTACTCAAACT-TCAGCCAcagcaatcaggcaagaaaaagaaat-aaaaggatataaataggaaaggaaaaagtcaaactaTCTTTTTATTCAGGTAAAATGATCCTTTGTGTAAAATCTCCCACAA----CAGCAGAAGGATCTtgcaactaaataaataaattcagcaacgcAGC-----ATGAAAT-------------TCCATAACA-TTCTGTTCATCAGTAAT-GATATACTCAGAA----------TACATTATCCCATTCGGGATACTTTCAAA----GTTAGATGCCTAGGAATCAACCTTACCAAAGAGTTAAAACAATTCT-TAACGAAAA-TTagagactctgaagaaataaattgaagatgatgtTACAAAATGGAAATGCATCCCCTGTTC-----------------------CAGATAAGTCT-TATTaccaaaaaaaatctattgatttAATTCAATTTCTACAAAAGTATCAATAATAGCCTTCACAATACTagaaagaaaaagcaatcctaaaatgcatatagaaccagaagagatctagaatggCTGAAACAGTCTTGAACAAAAAGAGCAAAGTAGGAGGCATTACAAGCTTAGATTTtaagttatataacaaaactatggtttaaaaaaagaaacagcatgttactgg--------caaaaAAGTAAGTCAAAGAAACcaaacagaagatacagaaa-acaCTCGTATACTTTTAGTTATCTGATCTTTCACAAAGGGCATAATGACACAGAACCATT------ATTGAAAACAGCATGAGGATTTTTCAAATattagt

a score=9514
s chr3            17386826 352 + 160039680 AAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACC--ACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA-TTCATGATAAAAGTTCT
s HiC_scaffold_1 185532531 319 + 233722169 AAGTAGGAG-----CCTTCCAACTCATTT-acaaagc--------------taaataaacctgACAAAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAACTG--------------GGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATTTCATAGAAAAATCtct

a score=5507
s chr3           17386837 354 + 160039680 ATTCTACCCAACTCAT-----TTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGA
s HiC_scaffold_1 10107596 338 + 233722169 atTCTTCACAATCCATACAATTGTACAAGGTCAATATAAACATTATACCATAAAGAGATAGAAATATCATAAGAACAATAACATGTTTGCTCATATCATTT-TGAACACAGTTATAAAATTTC--AGTACACTGCCAGAAAACTGAatctaaaaacatat-aaaatgattttacaCAATGACAAAATAGAGTACAT-CCATCAATAATGAATTGGTTCAACACCTGCAAATAAAT-ATTGCAAT---TTACATCAATTAA------------AACCAGATGATAATTTCAATTGATATAGAAAAGGCATTTGATAAATTTCAATACCCTTTTATGGTGAAAATCCTTGATGACTCAAAA

a score=6177
s chr3            17386846 318 + 160039680 AACTCATTTTATGA----AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTC
s HiC_scaffold_1 159471395 289 + 233722169 AACCCACTATATGAGCATAACCtctattaaa---------aaatgacaaaaacagcactctaaaa-ataaaactgcagggcaatctccctaatgaatttAGACACAAAACACT--------------GCAAAATGGACCCAGGA-TgtattaaaagaatgaaattccaTGAACAAAATGGGTTCCTTCCAGG---------ATAGTTTAATATTAGGAGATCTACTAATATAATTCATCACATCAGCAGATCAAAGGAAGAAAACCATATGGCCATCCGGGTACATAATGAAAAGacatttgttaaaaattcatCATCTTTTC

a score=15881
s chr3           17386846 735 + 160039680 AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCAT-GATAAAAGTTCTGGAAAGATCAGGAATTCAAG--------GCCAAT----------------ACCTAAACATGAT---------AAAAGCAATCTACAGCAAACCAGTAGCCAACATC-------AAAGTAAATGGAGAGAAGC------------------------TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagta-------tatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagccttt-------ctctacacaaagaataaacaggctgagaaa
s HiC_scaffold_1 20135648 797 + 233722169 AACTCATTTTATGAGGCTATCATCACCTGGATTCCATTATCAGACAAGGACTTTATAAGAG--GAAAATTGCTGGCCAACGTCCTTGATAAACAGACATGCAAAA-TCCTTATTAAAATACCAGCAAACTGAATTCAGAAGCACATTCAAAAAATTATTGATCGTGATAAAATGGGATTTATCCTA--GATACAAAAATGGCTCTACATATACAAATCAACAAATG--GTACACCATATTAATGAAATGaaggataaaaatcacacaataat-taaagagatggagggaaataATTTGTCAAAATGTAACATCTTTTCACAAATAGAAACTTTCAACAATTTAAGTATAGAAGAAATGTATACCACTGAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAGTTGAAAATTTTTGCAGtaaggtcaggaacaagacaag--tgcCCACTCTTGCCATATCTATTTAACATGGAACTGGAAGTTCCAGCTACAatgattagacaagagaaaggaataaatgGCATCTTAAGTGGAAAGCATGAGATTAAATTGTTTCTGCTTACAGACAACGTGTTCTTAGAAAACTTGCATAAGAAACTTAAAGGGCTCTACCAAacaattctt-----taataaatgaattcagtataGTTGCAGGATACAAAACTAATGCAA--AAATCAGTTACATTTTCACATACTCACCAAGAAGTAAAAACCaattaataaa

a score=7294
s chr3           17386848 244 + 160039680 CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA
s HiC_scaffold_1 33701942 231 + 233722169 cttattttataaagccatcattatcctgataccaaagtCA--GAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAATATT------------AGCAAATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATGCCAATAAGTAAATATGAAATGTCACATCAGCAGA

a score=13023
s chr3            17386858 421 + 160039680 GAAGCCACTATTACTCT-GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA---TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
s HiC_scaffold_1 134234716 413 + 233722169 GAAGCTATCATTACTCTTGAttccagaaacagaaaagaacccAGTGACAAAAGCAAACttcaggccaatctctttaataaacacaga----aaaatctaCATAGACATTA--GCAAgcagaatacaacaaatcatttaa---aagatatattatgaGCAAGTAGGCTTCATTCCAAGGATAATGTGATGGTTCAGTTTATGCAAATCAGTAAAAGTAATACATGACGTAAGCATAAGTAGGGGC-AAAATCACATAGTCATCTCAATTAATGCAGAGAAAGATTTTGACAGTAGCAAACACCCATTCAGAATGAACATct--gaaagaaatagatttaaaaaggaattttatataaatctgataaaaaccacTTATAACTAATCGATGGCCAATATCATAGTAAAtggaaagaggcagaaaaaaa

a score=42186
s chr3            17386862 1588 + 160039680 CCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA----TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcacca-----------tgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg-------------------------tatagagacagacaagtggaccaatggaatagaa-------ttgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagat----atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttac
s HiC_scaffold_1 232195281 1587 + 233722169 ctagtattACTGTGAttccaaaaccaaagaagaatTCAACCCAAAAAGCAAATTAaaggccaatatccctaatgaatatagacacAAAAGTCTTCAAAAAGACACTGGCAAGGAGAATACAGCAAACCATTAAGAAGACTAT-------GGCCACGTAGGATTCATCCTGGGGATTCAGGGA-GTTGCAGCATACACAAGTCAGTAAGTGTAATACAGCAAAGTAAGGGCGCCAAGGACAAAACCCAGCTGACCACCTCCGTAGATGCAGAACAGGCATCTGACAAAGTCCAAGCCCcgctcatgataaaaacccaagAGAACACTGGACCTGACGGTCAGTCTCTATCTCAAAGGGATGaaa-ccatctgtgacaaaccaacaggtaACATTATATTAGAT-GATCAAAACTGAAAGATtgtattctaaaatcaggaagaagactgggatgtccactatcaccactcctattcaacacagttctggaaacactagccagagcaattaggaaagagaaatgaacaaaaggaatatggataggaaaggaaaaagttaaattatcattgtttgcagattacatgctactctacatagaagaccccaaaaacgcTATCGAAAGACTTTTAGATTAAATAACCAGTT------ACATAACTGGATAGAAAGtgagcactcaaaaatcaacagcatttctgtacacaaatatcaaattcactgag--agaaattaggaaaataatacttATCATAATAGCATTAAAAAGtgt--aatatttaggaatcaatctaacaaaggaaataaatgatcttcatattaaaaattacagtactctgaaaacgGAAATTAACAAGGATATGacaaaatggagagatatccattgctcttgagtaggaagaaccaacatagtgaaaatgatcatactttcaaaattattatacagatttaatacaattccaatcaaaataccactagcatacttc-----cctagagaaaacatttctaaaatttatttag------agaagacctagaataacaaaaacaatt-tgaataacaaaggcaa----ggtagaggCATCACAAAGCCTGACTTCCTGATTTGAAAGTATATTACAGAGTTCACATGATAAAAACAGTACGGtacttgcaaaacaaaacaaaacagaaccgaacaaaaaaacaaacctaagGCTCATTGGAACACAAACAGCTCCAGAAGATGcggaaacaactccaaacacattcagccactt-atctttga---------caaacatgttcactagaagaaagacagcctctttaataaatggtgctagaaacaCTGAAttgccacatgctgaagactaaaactggatCT-TGTCTTTTGCCAGgcactaaagtaaaatcaaaatgcatcaaagatctacgtattgaaacagaaacactcaacCTCCTGGAAGGGCGActaggcagaactcttgaagcTACTGATTGGTGTAGACAAAGATTTTATG-GCAAACCCCCAATCACACAGGAGCTATCACCATCAATCAATGCCTGGG-CTTCACCAtagtaaaaagcttttgcacagcaagagaaacca-ccaagtGACGAGACAGC--CCCACAATGTGGGAACAAACTTTTGC

a score=36417
s chr3            17386874 2279 + 160039680 TGATACCTAAACCACAGAA-AGATCCAACAAAGATAGA--GAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCT---CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat----taactca--aacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcaga-agatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaa----------------tctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatc-gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacaga-----------acagcaa---------------------------------------------tggcttgt-----------gctgtaagatcgagaa---------ttgacaaat-------gggacctaatgaaactccaaag-----------tttctgcaaggca---------------------------------------------------------------------------------------------aaagacactgtctataagacaaaaag-------------------------------------------accaccaacag-------actgggaaaggatctttac-----------------------ctatc------------ctaaatcagataggggactaatatc--------caacatatataaagaactcaagaaggtggacctcagaaaatcaaataacc----------------------------------cccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgc-tggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactacc----ggaggatccagcaatacctctcctgggcatatatccagaaga---agccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagcca-----gaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactag
s HiC_scaffold_1 107509862 2501 + 233722169 TGATTCTCAAAAGACAtaataagaacaacaaaaacaaacaaaaaacgagACCAATACCTCTAGTGAACATgggtgcaaaaattctcaacaaaatactag-gaAATGAatttaatagtgtatcaaaaaGATCATCCATCATGGTCAAGCTGGTTTCATCCCAGAGGTACAAGGATAACTGAGCACACACAAGTCCAAAAATATAATAGATTACATTAAcagaatgaataataaaaatcactttattatctttatattcAATGCAGGAAAAGCATgcaacaaaattcaacatc---tcctgatAAAAAACCCTGAGCAAATTAGGTGTAATAAAATCATGCCTCAACGTG---AAGGCTTTGTATGACAAACTTA-AGCCAACAT---ATTGAATGACgtaaagttgaaaatatttcttgtacTATCAGAAACAAGAGAAGTGTGTATAGTCTCTCTACTTAtgttcaatatagtactagaag---tagcTGGAGCAAttggataataaaa----ataaaaaaaacataaataggaAAGGAGGAACTGAAATCATCCCTCTTTGCAAATGATGTG--AGTTTGTAAACAGAAACCTATGATCTCCACCAATAA-----TAGAACTGATAAAC----TCAGTAGAAAAGCAGTATAAAAAATTTAGTAGCTTATTGATATGTCAACAGTTTT-----------------------CTGAGAGAAA---CGGGAAAGCAAT-CCATTTACACTAgctacaa--aaagtaaaatattt----atgacta-aataaaggaaatgaataaCCTCCATGatgaaaattacataattttgaTGATGG--attgaagacacacacacacaaaagtaaagaTTTCTCATGTTCCTAGATGGATTGAAAGAATATTGATAAAGTGCCcctgctgcaaaaaaaaaaaaaaaaaagaaaaagtttacaaTCTCAATTTAATCCCTAGcaaaataccaatgacattcttcacaaAGCTAGgaaaaacatccta-aaattcatatggaaacacaaaagtTC-CTCATAGCCAAAGC-AGTCTTgagaaaaaaccaacaaaactagAGACATCACAGTACCTGATTCCAAAACATACTACAGAGCCATAGTAACCCCAACAATATGATTCTGGCGTA---AGAGGCATATAGGCCAATGGAACTGAATAGA--GCACAGAAACagaggaac-------------------------caagaaaaaaaaaatcac----tggagaAAGAACAGCCtcttcaacaaatgatgctgggaaaa-----tgaTATC-CATATACAGATTAAAATCTGATCCCTATCTCTTACTCTGTggaaaagtcaactcaaaatgaatcaaagacctataAGAAAGACCTGAA--ACTGAAactc-tagaagaaaatatagggatAACACTTCAAAACAATGGTATAGGTAATGATTTTCTGGATAGAACCCCCAAAACACAGGaaattgatagaattttcagcgtggaagggaaccatctgataggattttggcgtGGCTAAAAAGGGAGATATGAAATAGaagagacctttattttaagaatgtggggagagactctATGACCCTCCCAGGGTCTGGCATTATCTCcaccagacacgtggtgtgggggcatgtGGCTTAGGTTTGgagtggtgcctaaggggcattagtaatgcacaggtagcccattggtattcatttccgcgccacaggtaaattgcctaggggcgggaaaggtgacctcaGGATAGGGcctcttggttctgcctccaaggctttaccagctacagtgtcccatctggggcaaaatcctttcagaaatGAGCAAGAAATTTGGtaatattaaactaaaaaaactacaccaaaaaggaaacaatcaacagagttaacagaaaatgcacacaactggagaaaatatttgtcaattATTCAAATGACAAAAAGTTATCCAGAATATACAGCAATTCAAAATGCAATTATAAAATGGGACAATGAtctgaacagatacttctcaaataaagaaatataaatagccaACAAATACATGACAAAAGGCTCAATATCATTAGCTATCAGAGAAATTCGAATCAAAACTACATAGAGATAACATCTCACCTAAACTAGAATGGctatagttaaaaa------tattaacaaattcatGATGAAGA-----AGATAAAGGAATTCttatacattgttggtgggaatgtaaactagtatagcAACTATGGAGAACAG---------TTCTCAAATATCTAAAAGTAGCTTTATCATATAGATGATCCAAATATCTTACTTCTGGATATTTAGCCCAAGGACATAAAATCAGCATAGCAAAGAGACACCTGCACACTTATGTTTATTATGGTACTATTCACAACAGCTAATACTGTATATGGAGTCAGCCTAAttgcccatcagcagatgaac--aTAAAAAATATGTAGT-TTTATGCACAATGAAGTATT-TTCAGCCAT---AatgaatgaaattctgtcatctgCAGCAAAGTAGATTGAACCAGAGATtaatatgttaagtgaaaaaaagcaGACCCAGAAAGACAAGTACTACGTGAGCTGTTTCAtatgtggaagctag

a score=12506
s chr3            17386889 1763 + 160039680 AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTC----CAGGGATGCAG-------GGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATA---CCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT--TTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggata-------gcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcat--------ggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatc---atgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagt-ggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtg-ctgtaagatcgagaattgacaaatgggacct-------aatgaaac---tccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctc-agaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgagg-aataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaaca
s HiC_scaffold_1 124838658 1529 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaa--atttacaaaataatggcaaatcaaattcagtttaatgttaaa---ataatacatcatgaccaaattgCATTAGCTCTGAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAATCTTG--aactttttttctattattataaaCAAAGTAAACATATCAAC--TCTTATTACTCTAATTTAACATCATATTGAAATT-----------CAATaagatgagaaaaaga-ataaaaggcatAGATActgaaaaggaacaaataaa------actATTCAGAGATTACATGATTGCTCATGTA---GACTCTGAA--------------------------------------CGGGAAAA--------------------------------------------TACATTAAAgataaa--------------------------------------------------------------------------tctaataaaatatgtgCAATATTTGCATACTAAAACCTAAATATTATaggggaaataaaatatttaaaat------aaaaagaaaaata-catgcacTTGTAAATTGGAAGACTCAATGTTGTTGACATCTAAATTTTTTCCAGGTTGATCTACACAGTCAATATGAATCCAATGAAAATCCCAG--CAGGCCTTTAGTAGAGCCCAATGAACTGATgaaaaaat------gtataagaaaaattgaaggaaataCAACTGCTAAAGCAATTTTTAGAAAGAGCAAAA---TTGGAGGACT---TATACTCA--CAAGACATTTAC--AAGAGTTATCAGG----AAACCACATACTCAGAGAGTGATGTTATAGTG--AAACAAATGATACAATGATA---AATGGAAAACTCAGAAAC--------------------------------------AGGTCAAAATAATTTCATGGTGGCAGGGTAATCTATTATACAAATGGTACTG---CAGCAGTTTTCTATCCATATGCAACAAAATTTATCTCCATACATAAATTAAAttatacacaaaaattaattgGAAATTGATC-ATGACCTAAATGTTAAACCTGAAAGCTTAAAAATTCTGGAAGAAAACATAGAAGAGAAACCTTGTGACAGTGAG--TTAGGTAATATTTATTAGGCAGAGTA--AAAGATTTACGACtcataaatgaaaaattgttacatggaatttttttcaaaattaaacacttcTTATATTT--------------ACACTTTTAAGAAAGtgtaaatacaaaatattaactagatgaaaatattttcaaaatatatgtcaAGTA-AAGACTGCTTTTGAAAATATGTGAAAGACTTTCATATTTCAATTACAAGGAAAAGTAAGAACCCAATTTAAAACtaagcaatatattttta-aaagaagtttcaTCAAATTCAATATATTACtggaaaaaagcatttgaaacaatGCTCAACAACATTAACAACTAGAGAAATGTATGTTAAAACA

a score=8800
s chr3            17386904 667 + 160039680 AGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATG---ATAAAAGCAATCTACAGCAAACCAGTAG--CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACT--TTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagc---aattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaaca
s HiC_scaffold_1 173578727 609 + 233722169 agacagaatgtagcaaatcagtAGCCCTTAGGAACATAAATATACAAATCCTCTACAAAAGTTTAGCAACCTAAATCTCATGATAAGTAAGAAAAACAATATGTTTTAATGAAGTGGGGCTCGTCCCAGGGGTGCAACTCTGGTTCGGCATTAGAAAATCAAACAAGGC-ACCCACCCTACTAACAGACTAAAGGAGAAA----------------------CTGCAGAAAGATTCTTTAACAAAATGCAAAATCCTTTTTTGATAAGAATTATCAACAAACTAGGAAGTGAAGG-GAGCTTCTTGACTTGGGCATAAAATC---------CCAGGCAGTGGGATCACCTTGATAGTAA-------------GGACCTACGTCCTTTCCTATGAGGG--------CGGGAGCACACTTGTCATCTCTGACCTCTAGCTGTCGTA-----------AGTCAGAAACTGAAATaggcaaggaaaagaaat-aaaggcatACGGAGtggaaaggaggaaataaagctGCTCTTACTCTTAGGTAATACGATCATTTACACAGAAACTTCAAAGATCTACACCAAAG--CAACTAGGACCGATAAGTAAGTTCAACAGGGTCTCAGGATACAGATTCAGTATAAAAACATCAATTGTGTTTCTCTATACTAGCAGTGAACA

a score=38233
s chr3            17386910 2255 + 160039680 AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATG-CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAA--------------------GCAATCCCA--------------------------------------------------------------CTAAAA----------------------------TCAGGGACTAGAC---------AAGGCTGCCCACTTTCTCCCTA---------------------------CCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggataca-aattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaa-caggctgagaa----agaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaag-gataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaat-tgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatact-tatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaaga----tcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctca-gaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatgg-ctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactagcccaaaacctag
s HiC_scaffold_1 123227521 2221 + 233722169 aaaactacaggacaatttatttaatgaacatagatgcagaaattcTCAATAAGAGTCTGGCAAACAGAGTGCAACAACTCATAAAAAAGATCAGAC-TTAAGACCAAGAAGTCTTTATCCCAGGAATGTATGAGTGGTTCATCATACACAAACCAATACATATAATGCACTACATAAAAAGaggcaacaacaaaaatcac---atcatctcaatagacgaaaaaaaaagtcttcaatataat-------ctgttcatgataaaattctgaaagaaaagagGTATGGAAAGGCCttatc--aatctgataaaagttattTAGTACAGACCTCCTG-CAACATCATGCTCAATGAAGGGAAACTAGCAAGGCCTGGtgctgcatgtctgtaatcccaactctcAGTAGTCTAATGCCCAAGGTTCACCGTACATTCGAGGCCGTGCTGAGTTGCCTTACTTAAAACCATTCTGAACTATGTAGCAGCTCtctgtcaaaaaataaacaaatagggGAAAACTGAAAGCTTGTCCTCAAAAACCAGAAATAAGTCCAATACTGAACTTCTGTCAGTATAGTACTTGAA--ACTACCTACAGCAATCAAGCAAGAGA--------AAAGTGATCcataataggaaaggaaaaaatc--aacTTCCCCTTCCACATA----------------AAGAATAGCCC----AACTCCACATCATGAATCCTAGAACtgataaa----ttcagcaaggtaaTAGGACACCAAATTATGTGAA--AAATCAATAGTGCTTAGATTCACCAATAGTGAGTCcatctgaagaaaacaaaaaatagaaaaacagtacCATGC-AGctagcttcaagaaaaattaaatacttaggaa-----ctaGCAAAGAAAGTGAAAG-CATATGTAACAAAAACTGTAAG------------AGGATTGAAGAGGAcattgaaaaactgaaagataactt-tgttcctggataggcagaaccaatgttTTCAAAGTGTCCATGCTACCAAAAGCAGTGTA-----TTAATACAGTTGCAATAAAAGTACTACCAACATTCTttacagaacttaaaaaa--aaatgtaaaatttatatggaaccagaagagccccagaatagcaaaaaatcaccctaggcaacaaaagcaaagcaagaggtaTAACAACCTTGGATTTTAAACtatattacaaaactacaaaaaataaaaacaacattgtACTGACATGAACACAGACATATgaaccaatggaacagaatagaggatgcagaa---aaatCAGGCACAGTCAACTATCTGATCTTtgagaaaggggccaaa--catgtattGCAGAAAAAATTGCCTCACTACAAAATGTTTCTGGGAAAACTAGCTATACATAATCAGAAGATTG------AATCTATACCATGTCTCT---CACTAGAGTCTA----AAAgggatcaaaaatatttaaatacaa------atactT-AATTTACTGA-GAGATGACTGGTAAAACTCTT---GACATGG--ACAGGTAAAGTCTTTCTGGACAGAATCTCAATTGC-------ATAAGAAATCCCAAAAATCAACCAATGAGA-TTGTCAGTTTTAAAAAGCTGCTGTCCAGTGAAGGAAATACCCAGAAGAATGAAGAGAC--Tctacagaa-gggaaaaaatttttgcaagTTACTCCTCAGCCAGACgactaatatctaaaa-atataaagaa--aaaaatgttagaccctaccaaaataaaagaatc------aaaaagggcaattaaaatg----agaaaattttca---gaagtata---aatggccgaagtatacatgaaaaaaatgtgcaccatctctggccattagTGAACTGCAAATTAAGATaacactgagtttccatcttactccagaaagaatggtttatgatcaggaaatcaaa-aataacaaatactggcaaagctgcagagaagaaggaagccttctacattgttggtggcagtataaattagtacaaccactatgcaAACTCATATGGAACAttctcaaaaatgtaaaaataa-------ggtTGAGCCATTAAGtgtccttctaggtatcttctcaaaaca-----------gttaaagtgatatatgc------atacttgtggcagcacaattcataatagctaaatcttggaagtggcccaTGTGTC---CAACAG----ATGGACAATggaa-----------------aatggagtactactttgtta-taaaaaggaaaaatgtgagtcatttgtaagagAATGGATGCACcgtgagaccataatattaagtaaatca-------tacacacaaacttaaatattgtacattttcttatatgagaaaaccaatATATAACTTAG

a score=16767
s chr3           17386924 521 + 160039680 ATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagt
s HiC_scaffold_1 45948648 466 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaaaacattagccagagctgTTAGGTAAGtggcagaaataaaaaggatttgaaTAACAAAGGGAGAAGTCAAActattcttattttcaaatgat-tgataat

a score=5350
s chr3           17387065 239 + 160039680 ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACA-TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
s HiC_scaffold_1 68361097 231 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT-ATGCTGGAATCATacagcaaattaaaaatagaagagaactATCTCAATGTtgacaaagaatatttttaaaaa------ggcc--tatAATACTCAAAGGTGGTATGTTGGATACTTTCCCCATAAGATCAGGTAAAAGGCA

a score=8905
s chr3            17387099 366 + 160039680 ACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc---actttttgcagatgatatgatagtatatataagtgaccctaaaa
s HiC_scaffold_1 169467336 310 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAAT-AGGAATAgaatgtctttatctcaatctgata---------------------------------ataTGAAAAGAAGAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAATGTATTTCTCAAgtcattagtcagagcaattaaacaagaggaagaaatacagt-----------------gaaaaaattaaattatcattatttcttacagatgacac-----tctatatag--aactccaaaa

a score=6710
s chr3           18109289 376 + 160039680 CAGAAGTGTGTGTGTGTGTGTTTAAATTTCAGAAACACGGAGTGCTATA--TAACTCATCTGATTATTACAGTTT-TTAATATTCATCC-AAGGCATCAGAAAAGATG---TGCTGTACATTTGTGACACTTGGCCACACCT-AAAACAGAGGTAGTCCAGATTACCACAG--------------------ACTAATAAGTACTGTTTGAATTACAATCAAGGAGGTTCTCTCAGAAGTGATCTTGGTGATCAGATGGCAATGGAAGTTCTAGATTCATTGAGAAACAAACTATTAATAGTAGTGTGTATTCTAACAATTTACACCAATGTTTCCAAAATTCAGCTTCCTTTTTCTATTCCCATGGTTGCCAAAGTTGGTTTACTTGAAAGTTTTTGAAAGTTT
s HiC_scaffold_1 75756298 373 + 233722169 cagcattgcGTGTTAGTGGGATTG-------GAGGCACGCACCACTATGAGCAACCCACAGAGGtactttgttttattattgttcaGCTTAAGATAGCAGAAACAATGACTTACT-TATATATGCTGCACTCAGCCATAACTGAAAACAACG--AATCCAGAAAACCACACCAGGGCACCTGAGGCAAAGCACTAACAAGGACTGCTTTTGTTATGAGCAAGCTGGGTCTCCCAGAGGTGGACCTGGTGATTAGGTGGCAATGTAAGTTCTAGATACCT-----ATGAAGTTCTAAACTGTAGCATGCTGTCCAATAATTTGTACCAGCATCTCCAG----------CCTTCCATAATCCTTATTGtagagagatt---tttatttta---tttttaaaaattt

a score=6115
s chr3           18488987 184 + 160039680 TTTATTATTCTTGATGAATAGTAAATTATTCTAATAGCATTGACTGTTCTATTCATTCATTATTTGAGGATGATTAGAAGTGAATAGCTATTA--TGAAGCCTCACCAGTTCCCAAAATTAAACCTCAG------AATGTTGTGTTTCCTTTTGGCTCTGAGTAATTATCTCTGTTGCTTCCTCTAATTcac
s HiC_scaffold_1 29546935 190 + 233722169 TTTATTATTCTTGATGAATGGTGAATTATTCTAATAGTGCTTATTATTCTATTC-TTTACAACTTGAGGCTGATTAAGAGTGAATAGCTGCTAAGTGAATTGCTGCCAA-TAGCAAAATTAAATGTCTATACTTTCATGGTGCTTATTTCTTTCAGTGTTAGTAATTGCTCTGGTAGTTTCTGTCACTTTac

a score=10559
s chr3           18533730 667 + 160039680 ATCCTGGAAAATCTCTCTTTGGAGCGATTGTTTGACCCT---TCCCAGGCAGAAATGAAAATCTGTGTGCCTAGAAACAGGTTTTAGAGGTAGTTTCTTTTCACAATAT----CATTTTTCAAATCACTGGCTAAGGATT-------------GTGGTGGTGGCAGTAAAATGGGCAATATCAAACAGAACTATCTGGAAGCATTTATTTCCAATCCAAAATGAAGCTTTATCTAGTGCTTGTCACAAATCTACATATTCTTCTCTTCCAGCTGACTACAATCACAAGGTATACCTCACTTTGACATCTGATGACAGGACAGTAGTGTGCTACCACACTTCTGTGGACATTTCCTACAAACATACTAAACCTATCTCTCAACCAGATCATCTGCATAATAAAGAGAAAACACACAAGCAGGTGCTGAAAACCATATTAGAAGGAAAATTCAATGGGCTTGATCAAGGGCCCATTAAAGAACAACTAAGCAAGGTGTTCTTCACTACAAATCATCGCTGGTTCCTGCATGGACAGTTTCACAGACATTCCAAGAAACTGAATCCTCCCAAAGACAGGTGACTACTCTTTATTCTCTGAGCATCAAGGAAA---TTTTGCTTTGTATCTTATTTGCCAGCTGATAAAATGTA-CGTGGTGTGTTCATTAAGATGGTATATAGGAAAATAATAA
s HiC_scaffold_1 72444082 605 + 233722169 attttgatatatatctTTCTGGTGC---TGATGAAACCTGGGTTTCATTCAAAGATGAAAATTTATGTtccaagaaa----ttttttaaaaaatttctgtctaaaacatattttattttaaataccatGTAATAGGGATCTTGATATTTTACAGTGATAGCAGCAGTAAAACCCATGATCTCAAAgaagattttcttaaaa----tattcctaATGTGAAATAAAGCATTTTACTGTGTTTGTTATAAATCTG-----TGTTCGCTTCCAGGAAACTCCAACTGGAAAGTAGCGGATGGTTTGATACCTGCTGGCAGGATGATAATATGCTCCCACCTTTCTGTGAGCATTCTATATGAAGACACAAAACCTATCCCATGACAGGAGCCTGTGCAAAACAATGAAGTAATA-------AGG---TGAACAC-------------------------CTTGAGCAACAACTTCTGATAGGAAAACATAGCAAAGTGT-------------CCATAGTTG---------TGGATGATTTCACAGATGTT---AGAAACTGGATCATTGATTAGACAAAATATTGA----TATTCTTAGAGGAATCAgcaagattttttattttgtatctcacattctattttaaataatgcaGTTTAATGTTTTAACTAATGt------tagtaaaataataa

a score=8437
s chr3            18558797 200 + 160039680 TGAAAAACAAAAATAGTTAAAACCACACCCCCAGCAATGAGCATAGAGATACCTTGTTGCTGGTCGTGTTCTTATTTCTGTCAGTGGCAGAGCAGATGACAGTCCTTTGTTCATCCTAGTGTGATGCCTAGCTAGATGGATA-AGCTGTCTTATGTCTAGGATTCATAAaagtcaaatcaaaataaattaatcaaatcaaa
s HiC_scaffold_1 195809903 199 + 233722169 tggaagacagaaaaagc-aaaaagacccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCT-GTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggcaataagagcaaa

a score=6198
s chr3            18644338 563 + 160039680 agaatgatactccaagtactgtcattttgtgcacaagaga-cctagaactgaaggagcttggcaaagctagaaagcaagcctt----------ctgtagcat------tctcttaccctcctttatctttcCTTCATTTCC-------------------------------------TAAGGCAGGTCATAGAAACTAGAACTGCTCCCCAACACAGCAAGCCATAAAACCTAGAAACATCTCTCTGACCTACCTCCCCTGAAAGTAGGTCACAGTACTTGGTCCAGAAAGATCCCATTTTATGATGTATAGGAAGAGAGAGCAAATTTTACATAGACAGGCTAAGTAAAACTAGGGCCAATACATTTCCTCCAGTCAATTAGTGTTCTGTCCTCCCCCTCTAGCCCAGTCCCATAGATA---CAAAGGCTGTCCATTCTGCATCAGACCCAAACACAGAAGTAGTTTTCCCTAGGTCTTAGAGCCTTCCTTTCAGAA--CTTTCCTGACATGGTCAGTGT---ACTAAGCAGATATGTTG--------TTTTGTTTGTTTTGTTTTC-------------------TCACTCTGTCTTTGGGTATGGGTTTTCAATATGGGTCTGGA--AATGGGTAAAATAAATTCTGTTT
s HiC_scaffold_1 117993922 617 + 233722169 AAAATAAGATCTCAAAGAATGGCACTTTGGTCTTCTGAGAACTTTGAGCTAAAGGAGATTGGAAGACCTCAGAAGCA-GCCTGAGAAGTAGAGCTTGAGAACAGAATGTCTCCTGTTCTTCTTTTCCCTGCCTTCTTTCCCCCCAAAGTGGATCAGATAATCCAGGATTCCTCTTTTTTGAAGTAGGCTATAAAAGTTAGAACTTCTCTTTCTGAAAGCCAGGCATAAAACCTAGGAAGGctgttctctcccttctctcttgaAGGCT----------CTCATTCCAGAGGG-TCCTGTCCCATA---TCCAGGAGGAAGGAG---ATCTT-CATAGAAAGGTAGATT----------TTGATGAGCTCCCTTCTGTTGGTTA-CATTAGATCCAAGCCTTTT-GTCAGATCACATTTTTATTCCA----TTGTCCATGTT-TATCAAACCTAAACATAGAAGTAATTTTCCCTGAGTCTTTGCTCCTTCATTTCTGAAACCTCTTGTGTCAT-GTAAGAGCTTGGTTAAGTGAGTATgttatgcttttctcttgttaactTGGTTTTTGTTATAGAAGTATCTGCCATTACTCTTATGGTGAGTACAACTTTttgccatgtacatagaagaatggaaaaaaaaaaccttgcct

a score=4014
s chr3            18700511 123 + 160039680 AACTTTTTGAGGACACACTTCCAATGAACCAAGGGCCTTCTTCTAGGCCCCTCCCCCAAAAATTTATCACCTCTCAGCACATCCAAATGACAGCAACCAGCCTGCTGGTATATACAGATTTTT
s HiC_scaffold_1 138445006 118 + 233722169 AACTTTCTGAGCACATACCCCCAATGACATATCGGCCTCCTCCTATACCACGCCCCCAAGAAACCATCACCTTCCAGCAGCACCACCTGGAGG--ACCA---TGCCTTCACATATAGACCTTT

a score=5343
s chr3            19584721 127 + 160039680 CCCGGAGGCCGGA-GCCCTTAGCCTGGGTGGGGTGGCGCGGGCC---------------AGAAGGACGCCATC-CCGGCCTAGGCCATGGAGGCTCCCGCACTGTCCCTCACAGAGGAGGACTTGACTGAAGTGAAGAAGGACG
s HiC_scaffold_1 132355511 144 + 233722169 CCCGAAGGTCAAAAGCCCCCATTTAGGGCGGGGCGGCGCAGCCCCAGCTCCGGCATCCGGAAGAGGCGCCATCTCCCGCCCCCGCCATGGAGCCCACCGCGCCGTCCCTCACCGAGGAGGATCTCACGGAGGTGAAGAAGGACG

a score=17370
s chr3            19584847 343 + 160039680 GCTTTAAAGAATTTACGTGTTTACCTGTGTCAGAAAATCATAGCTGAGAGACATTTTGATCATCTACTTGCAaaacaaacaaacaaaaaaaaccaaaaaacaaacaaacaaacaaacaaaaaaaccaacaaCAACTAAGTAGAGAAGACACGGAAGAAATTTCTTGCCGAGCTTCAAGTGGAAAACGGGCTGGGAAGTTGTTAGACTACTTACAGGAGAACCCCAGGGGCCCGGACACCCTTGTGGAATCCATCCGCAGGGAGAAAACACAGAGCTTCCTGATTCAGAAGATAACGCATGAGGTGCTAAAGCTTCGGAATATAAAACTGGATTACCTCAAAGG
s HiC_scaffold_1 132362086 290 + 233722169 gCTTTAGAAAATTTGCGTGTTTACCTGTGTGAGAAACTCATAGCTGAGAGACATTTTGACCATCTACGTGCAAAAAAAATA-----------------------------------------------------CTCAGTAGAGAAGACACTGAAGAAATTTCTTGTCGAACATCAAGTAGAAAAAGGGCAGGAAAATTGTTAGACTACTTACAAGAAAACCCCAAAGGACTAGACACCCTCGTTGAATCTATTAGGcgagaaaaaacacagaatttcCTGATACAGAAGATTACAGATGAAGTgctaaaacttagaaatataaaaCTAGAATATCTGAGAGG

a score=31279
s chr3            19585183 1328 + 160039680 TCAAAGGCCTGAAATGCAGCAGCTATGACCCCTTTGCAGCTGGAGCCACCAACAGCCTCTCTAGGTGCAATTCAGATGAGCGCAATCTCTCTAAGAAACAGAGAGCATCCACTATTGTGTACCACCCGGAGGGAGAGTCCCGCACTGCTCCCTTCTTCTCTATGGCGTCGTCCCTGAACTTACCAGTCCTGGAAGTTGGCAGGACTGAAAACAGCAGCTTCTCTTCAGCCA---CTCTTCCTCAACCCGGGGACCCTGGGGCTCCCCCTTTGCCCTCAGACCTTCCGTTGGAAGAGGGGGGAAGTTGTGGAAACTCAAGTGAGATGTTTCTCCCCTTACGGTCATGGGCTCTTTCACGCCAATGATACATCACCGCC--TAGCTGTTTTACTAGTGATGCAA---AATGCTGTGAAGGAGGC-CATCTTTCTATACAAACCATGGTGACAGGTCACTCACATTCTATACGTGCCTTTGAAA---TCAGTGTACACATTCTCTGTAAATAGGATTTGTTAGG-GGAAAGAAGCAC---TCTAGGGT------GTAAATCATGGTGGTCGTGACTTTTCCATAACGTCCTTTCTT------------TTTTATTATTTTTAGGTGTTTGCGTATTTTGAACTTT------TTATAAGACTGATTTTATCAGCA--TATTTCTCAATTTGAGAAAACAACTTGTGGATTGGGAATAATGTTTTTTTTTAGCACATTTATGCTACAAATTTTCAGTCTGATTGTTTTTCCCACTGATCTGGCAGTACA-TTTTAGCAGTAAGCTGTTCTGTTTCAG---GAAAGCTGGACAC---TGGGAAAGCTGCCGACACGCTCAGGAGAGTGTCCCACTC-CTTAGTT---CTGAGAAGCCGTCGGGTTCTGAGGAGACACCTGAT-GCCACTGAGCCTTGTGAACTCAGTGGGCCAAAGTTTGTTTTATACTCACCCCGCCA----GTGTGAGTGTCTT---ACTTTCACAGGCCTTGTGTCCTCAGTCCTATCCTAAAGGATGTTATCCTGGCAG-GGCATC-------ACTTGTAATTAATGGATGATACTTGTAATCGTCTAAAGTCCTCGCTCTGAGCTGTTCGTTCTGGGTCTAAGAGTG--CTGCCACGTGGAACATGGGTGAGCCCCTAGAGGAACT-GACAGGATGTG---TGCAGTGGG------CAGTGTGGCTTTAG---TGTTTGCATCAGACAG-TCACCAGCTCCATCCTTGTTTTTACTGCATTACAAAGTTTGACTAACTTTACACATTTAAAAAATGCTGATTGTCTTCGTTTAAATTATAATTTTACCTATTTCCTGACATCTAACTCCTATATATTT----------AAAAATTAAGAAATGAAAATTTGCTATTAACAATAACG--TTTTTAAT
s HiC_scaffold_1 132364121 1327 + 233722169 TCGTAGGACTGAAAAGTAACAGCTGTGAGCCTTTCCCAGATGGAGCCACGAACAACCTTTCCCGATCGAATTCAAACGAGAGTAATTTCTCCGAAAAACTGAGAGCGTCCACAGTCATGTTCCACCCCGAGGGCGAGTCCAGCACGGCTCCCTTTTTCTCTCCCGTTTCCTCTCTGAACTTGCCCGTCTTGGAAGTAGGCAGAACTGAAAATACCATCTTCTCCTCCTCGAGTGCACTTCCGAGGCCTGGGGACCCTGGAGCCCCCCCTTTACCACCAGAGCTGCAGTTAGAGGAAGGAGGAACTTGTGGGAACTCAAGCGAGATGTTTCTTCCCTTACGGTCACGCGCTCTGTCACCACAGTGACACTTGActgtctttgaattttttaatagcgaccaaaaacaatgttttaaatgATGTGAATCTTTTTATA-AAACCATCCTAATGATTTACTTACATTAgatatgt-cttttaaaaaacacaaggtAAGCATACTTTGTAAATGGAATGCTTTAGatgaaaagaaatacagttttagGGTAGCTAAATGAATCATGTTGGTCatgtatttttcagtgtgttcttttttgtgggtttttcccttttttttttcttggtgttttaattctttcaagttttttatGTTGCAAGGTTAATTTTAACAGAGACCATTGTTCTGTTTGACAATA-AACTTTTGGGCTGGAAATAAGGTTT------------------CTCCGAGTTT---------------------------TGGCAGTAAATTTTTAGCATTAAGCTCTTCCTTTTTGGTAATAAAGCCAGCCACAAATGGGAAAACCGCCTGTACACTGAAAAGAATCTCTTTCCCACTTGGTTGGGTTTACCAGTTCTCAG--TCTGGGGGAATACATGGTAGAGACTGAGCCCCCTAAGATTTGTTTACTAAAATCCATTCCTTACTAACCTTACTAATTGATACTACtgtctttgaatttt--taagtCTTA----ATCATTTTCATACTAAAGAAAAGTATCACAGTGGAAGCCTCAGTGTTAACATGTAAT---TTGATGAGATTTGGA-------AAACT----GTTCCG---TGTACTTTTATTGTCTTTGAATGAACTG----------TATAGTTGA--------AATAACTAGAACGGATTTATTTTGGGGTGGATTATGTCAGTTCTGCTTTAATATTATTCTAATCAAGTAGATCATTAACTAGATTAATCCtttta---tacaacaaaattt-act-gttttacacatttataaatcttactctgttttcctttaaattataatttga--tGTTTCCTGAGACTCATCTcctatatatttctatttctaaaaaaaactataaatggaGTTTTTCTATTaacaataaaagttttttaat

a score=5350
s chr3            19640977 382 + 160039680 AGTCTACAGTA--GTCTGCCTTC--CTGTCCCAGGCTTCATAGCAACTCACA----ATCTCACCTAGAGCAGCTTCCAATCTTTTCA--TCCTTTATAT-------CCATTTCTA----------------TTACTGTACTTCAGGTGTG-----CAATGCTT--------------TTACCACTAAGTTATAATTGCCTGAAGCATTCAGCACCACACCATGCTGTTCCAGCTTGTAGTCTAGGAGCAGTAAAACATACCAAAGAGCCCAAGTGCCCAGTTACCTCTGCCTGCTAGGCTTG-----AGTAACTCTGACCTGATGGTCACACA---CTGATAGACTTGTCCAGGGATGAAGTTCTCAGGATACAGCCCCACTGACAAATGAGTCATGAGTACACTATTAGTTT--AAAGACC----ATAGTGGTTGATCTTGGTCATT
s HiC_scaffold_1 158156442 433 + 233722169 AGTTTACAGTGATGTTTGTCTTCAACCTTCCC--GCTCACTCACCACTGACGTGGTGTCTGTCCCAGAGCCCCTCCCAGTCTTGTAAGCTCCCTCACACAGGTGCGCCATTTTTACCTTTTAGACCATGTTTTATTATACCCCCTCTGTGTTCAGCTATGTTTAGATATGTTAATACTTACCACTGTGTTATAATCATTCATAGCATTCCATAGAGTAGCATGCTATACAGGTTTGTGGTCTAAGAGCAAGGGTTGATACTGTATAGCTTAGGTGGACAGTAGACTTTGCCATCTAGGTTTGTGTTAAGTACCTTCTA--TGATATTCATACAAAGCTGA-AGTGTTACCTAACCATGCATTTTTCAGAACATATCTTCA-----AAGTTACACATG-----ACTATAAGTTGCAGAAAACCCTGAGTAGTGGTTAATATAAGTCACT

a score=5170
s chr3           19641101 216 + 160039680 TTTACCACTAAGTTATAATTGCCTGAAGCATTCAGCACCACACCATGCTGTTCCAGCTTGTAGTCTAGGAGCAGTAAAACATACCAAAGAGCCCAAGTGCCCAGTTACCTCTGCCTGCTAGGCTTGAGTAA-----CTCTGACCTGATGGTCACACACTGATAGACTTGTCC-AGGGATGAAGTTCTCAGGATACAGCCCCACTGACAAATGAGTCATGAGT
s HiC_scaffold_1  5358923 215 + 233722169 TTTGCCATTATGTTACAGTTGCCTACAATACCAAGCACAGTAACATGGTCTTTAGGTTTGTAGCCTAGGAGCATTAGACTATACCACAGAGCTTGTGTGTGTAGCTGGCTGTACCCCATAGCCTTGTACAAATGCGCTCTG---TGAAGTTTGTACAGT----GACTTCTCCTCAAAACACACATCCCAGGATTTATACCTGCTAGTAAGCAATGCATGAGT

a score=4405
s chr3            19641102 193 + 160039680 TTACCACTAAGTTATAATTGCCTGAAGCATTCAGCACCACACCATGCTGTTCCAGCTTGTAGTCTAGGAGCAGTAAAACATACCAAAGAGCCCA-----AGTGCCCAGTTACCTCTGCCTGCTAGGCTTGAGTA-----ACTCTGACCTGATGGTCACACACTGATAGACTTGTCCAGGGATGAAGTTCTCAGGATACAGCCC
s HiC_scaffold_1 123480310 189 + 233722169 TTGCCATTGTGTTACAGTTGCCTACAGAATTCAGTAGAATAACATGCTGTTCACATTTCTAGCCTAGGAACCATAGGCAATACCCTATGGCCCATGTACAGTGGACATTCAC---------CTAGGTTTGGATAAGTACACTCTA---TGATACTTGTATA--GACACAACtgtttattgatatatttttcagaatatatCCC

a score=6308
s chr3           19641338 491 + 160039680 TAGTGGTTGATCTTGGTCATTAACTTGATTAAA------GACTCCTAGAATATCAGTCAACTACCTCTCTGGGTGTGCTGTGAAGCTGTCTCTAGAGCCAAATCTCATGTCAGTCTTCAAACTGATAGGCAAGACATACTCACAATTGAGGGAAGTT---------GGA--GCCTAGGAACAAAGAGAGGAAGAGGAGGGCATCCAA-ACTTGTTAGCACCCTGGGATCTTTTGGGGTGGTTTGGTGTTTGCTGCTGCTCTCATTCTCAGA---CACTGGACTTCAGGATTTTTAGCCT-------TTGACTTGTATTAATGACTCTTCAGGGCCTTCCTGACCTTCTGCCTTGGGCTGAGACTACATCATTGGTCTCTCTTGTCCTGA-ACTTCAAGCTT-CTGCATTAAGAACCTATTGGTTTCTGCAGACCTCTAGTCTTCA----------GAAGAGCATTA--TGCATCTATACAGCCTTTGATGATGTGATCTGATCAGGCCAACCCTTCTTATGATACTACACATA
s HiC_scaffold_1 88238669 509 + 233722169 TAATAGTCATTCTCCATTGTCAGCTTGATTGGACTGAGCGATGGCTAGGAGA---ATAACCCACACTTTagagtgtgttattgaggtgTTTCCAGGGACGATTAGCATGG-AGGCAGCAAACAGAGAGGGAA-AGATTCACCCCAGTGTTAGTAGCTTCTCCCTGTGGCCCGCCTGCGatgcaaaggagaataaggaGGACGTCAATTACCTTTGAGAGC--TGGATTCT--------GCTTCAGTGTT----GCTGCTGTCATTTTGTGAACACATTGGATTCTGA---TTTCAGTTTCCCAGTATGGACTCACAGCAGTAACTCCCCAGGCCCTTCCAGGCCCTCAGCCTTGGGCTAGGGCTGTGTCTTTGGTCCTTCTTGTTCTGAGACTTTTGGCTTGTTGGACTGAGAAGCAATTGGATTTTCTGGCTTTCCAGAGTACGCACGGATAGCGGATAGTATCAACTGGAT-TACCCATCCTCTGATCCTGTAAGCCAATCTAACAAATCC-CCTCATATCTATATACATA

a score=5625
s chr3            19641567 199 + 160039680 TTTGCTGCTGCTCTCATTCTCAGACACTGGACTTCAGGATTTTTAGCCTTTGACT-------TGTATTAATGACTCTTCAGGGCCTTCCTGACCTTCTGCCTTGGGCTGAGACTACATCATTGGTCTCTCTTGTCCTGAA--CTTCAAGCTTCTGCATTAAGAACCTATTGGTTTCTGCAGACCTCTAGTCTTCAGAAGAGCATTATG
s HiC_scaffold_1 102220980 204 + 233722169 ttcactgctgCCTTCACTCT--GGCATCATATTCTAGATTCTTTAGCCTTTGAGTATGGATATGCACCAGAGGAGTCTCCAGGCCTTCCAGGCCTTCGGCCTTGAACATTTGCTGTATCATTAG--TCTCTTGTTCTGAGGCCTCCAGCATCTTGGACTGAGCAGCTCCTGATTTCCCCAGCTCTCCAGCTTGCAGAAGCCCACTGTG

a score=4465
s chr3            19641570 129 + 160039680 GCTGCTGCTCTCATTCTCAGACACTGGA--CTTCAGGATTTTTAGCCTTT-------GACTTGTATTAATGACTCTTCAGGGCCTTCCTGACCTTCTGCCTTGGGCTGAGACTACATCATTGGTCTCTCTTGTCCTGA
s HiC_scaffold_1 207915464 138 + 233722169 GCAGGTACCCTCACCTTTGAATATCAGTTTCTTCAGTACCTTCAGCCTTTTAACGTAGACTCACACCAGCAACTCTCCAGGAGCTTCCAAACCTTTGGGCTTGGACTGGTATTGCATCTTTTGTCTCTACTGTTCTGA

a score=48778
s chr3           20223731 976 + 160039680 TTTTTGttgttttgttttgctttgttttgttttAAAAAACAGACTTAATTCATTT-ATTTTCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGA---TCAGTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTTTCCAGAGATCGGGGGTCA----GGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGTCATCAGTAGCTTC---TTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATGGTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATGAATGGCTTGAACCTGGTT-----------AGGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGAACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCACGGCCACGACCTCAACCTCAGCCCCTAAGACCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCC--AAGTCCTCGGGCCCTCCCACTGCACCTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGAAGCCCATTCTTTATGTTAATAT
s HiC_scaffold_1 23605965 955 + 233722169 TTCTTGACtctacgtttttttttttttttt---------cagatttcattcattttatttttcttgtgtaaaAACCCTTATGTTGTACCTACCGCTGGAGCTTGAGTCCTTTGATCAGAGACT--AGTGTGGGTTTTCACAAGACAGTCAGTGAATTCCTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCTAGAGGTCAGGAGTCATGTAGGTAACTGTAGGTCTTAGAGATGGCATCAAAGGTG-CCTTAGCAAAATTGCCCAAAGTAGCAGTACAGTCCCAGGCAAAGGTGTAGCAGTCATCAATACCAGCTATGAGCAGCATCACTTTGGGCATAAGGCCTGAGACAACCCCAGTGCCTTTGGGTTCGGGGATCAGACACACCA-CACAGAGTCACAGCGGCCTGGCAGCTGGCAAGGGACTGTGTGGGGCTTGTCAATCTTGTTTCCCCAGTGGCCTCTCCTCTCAGGAGCAATGGAGAGTTTGTCCAGGATGATGGCCCCCCGAATGGCAGTGGCTACCTCCTTAGAACACTTTAAATCCAGAGCCACGTGACTTTTGTATTCCCCAGGGACGACAAATGCCTTGAGTCTGGTCCCCTGGCCAGCACGAGTTTGGTTCTGCACAGGCATGATCTTCAGGACTTCATCTTTGAGGGATGCACCCAGGAAAACGTCAATAGTGTCAGACTCCTTGATGAGTAGGGAGAAGAGAAAACTTTCCTCCAGGGACTTGATCTTCATGTCCTTGACCAGTCAGTGCAGCTTGATGACAGAAATCCACTCCTTGTCCTCGGCCTTACCACCACAAGCTCCACGGCCTCGAA----GGCCA-------------------------CTTCAGAAGCCTCCACAGAAGCCACTGCGGCCTCCCATGCATGGGCCCCCTGGAACCTCCCGGTCCTACTGCTGCAATGGCGTCATCCTCCATCTGGTGTTTCCTCAAGGAAGAag---actctttaaatttttat

a score=37028
s chr3            20223749 938 + 160039680 gctttgttttgttttAAAAAACAGACTTAATTCATTTATTTTCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGAT---CAGTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTTTCCAGAGATCGGGGGTCAGGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGTCATCAGTAGCTTCTTGGGCACAGGA-GCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATGGTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATGAATGGCTTGAACCT--------GGTTAG---GAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGAACCCAGGAAAAAGTCAGTGATCTC-AGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTC----CAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTA-CCTCCACGAGCCTCGCGGCCTC--GGACCACGGCCACGACCTCAACCTCAGCCCCTAAGACCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCTCGGGCCCTCCCACTGCACCTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGAAG
s HiC_scaffold_1 178178356 867 + 233722169 gctttttttttttttaa----cagatttcGTTCACTT---TTTCTTGTGTAAAAACCCT-ATGTTGGAGATACTGTTggagcttgtttttt-----------------------tttttacaagatgGTCAGTGAATTCCTGGTAAGGAGACTTGGTGAACATAGTCTCTTTCCAGAGGTCAGGGATCAGGTAACTGTAGGTCTTGGAGATGGCACCCAAGGTGGCCTTGGTGAAGTTGCCCAAAGTGGCAGTGCAGCCcctgcc--------agcag-----------------cagcagcttcctGGGCACAGGGCACAAGCACAATGCCTGTGCTCCTGGGGGCA-GGATCAGCCACATCAACACTGAGCCACAGCAGCCTGTCACCTTGCAAGGGACAATGTGGGCTTTG----TCTTGTTCCCACATTAGCCTTTCTTCACAGGAACAACTGAGAGCTTGGCCAGGATGATGACCCCTCAGGTGATAGTGGCTATCTCCTAGGAGCACTTTTCAACCAGATAAACTTGACCATTGTAGTTCCCAATAGTGACAAATGCCTTGAACCTCATCTGTAGGTCAGCACCAGTTTGCTTCTGCAAGGGCATGATTTTTAGAACTTCA-CTGTTAGAAACGTACCCAGGAAAAAGTCAGTCATCTCAAGACCCCCTGATGGATAGGGAGAAGACAGAAATTTCCTCCAGAGAGGTGA---TCATGTCCTTGGCCAGCCAGCCAGCTCAGCTCAGGAACAGGGATTCACTCCTTGTCCTCACCCCTAGCCATCATGCCCCT-GAAGTCTCCAAGAGAACTGTCTGACTCTCCATTTTGGCCCCTCATGCCT---GGACTCTCTAT----------------TCTCAACGCCAGGCCCCCAA--------GCCCTCCTGCTGTACCAGCATCATCCGCCATTTGgcgtatt-ttgaagaaaaag

a score=48142
s chr3           20223751 936 + 160039680 tttgttttgttttAAAAAACAGACTTAATTCATTT--ATTTTCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATCA---GTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTTTCCAGAGATCGGGGGTCAGGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGTCAT---CAGTAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATGGTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATGAATGGCTTGAACCTGGT-----------TAGGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGAACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCACGGCCACG--ACCTCAACCTCAGCCCCTAAGA------CCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCTCGG-GCCCTCCCACTGCACCTGCG---TCATCCGCCATTTGGTATTTTCCCGAAGAAGAAG
s HiC_scaffold_1  1549977 912 + 233722169 tttattttatttt------cgaatttcattcatttttattttccttgtgtaAAAACCCTTATGTTGTAGCTACTGTTGGAGCTTGAATCCTTTGGATGGAGACTCTAGTGTGAGTTTTTTCAAGATGGTGGGTGAATTCTTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTCAGGTAGCTGTAGGTCTTGGAGATGGCGTCAAAGGTGGCCTTAGCAAAGTTGCCCAGAGTAGCAGTACAGCCTCTGGCC-AGGTGTAGCAGTCATCAGTACCAGCCATCAGCAGCAGCTTCTT-GGCACAGG-GCTGAGACAATGCCAGTGCCTCCCGGGGCAGGGATCAGACGCA---------------------CTGTCACCTTGCAAGGGACTATGTGGGGTTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCGCACAGGAGCAATGGAAACCTTGGCCAGGATGATGGCCCCGCGAATGGCAGTGGC------------------TACACCCAGACCAATGTGACCGTTGTGGTCCCCAGTGGCGACAAATGCCTTGCACCTGGCCCACTGACCAGCACGAGTTTGCTTATGTACAGGCATGATCTTTAAGACTTCATCCTTTAGGGATGCGCCCAGG-AAAAGTCAATAATCTCAGACTCTTTGATGGCTAAGGAGTCCC--TGGATGGCTTCCAGGGACTTGATCTTCATGCCCTTGACTAGCCAGCTCAGCTTGGTGACAGGAATCTACTCCGTGTCCTTGGCCTTACCGCCACGAGCTCCGTGGCCTCAGCCCCTGGCCCTGCCACCTCA----CGGCCTCGAAGGCTACTTCCGTCCGAAACCTCCTCGGAAGCTGCAGCGGTTTCCCATGCCTGGGTCCCCAGGGTCTCGGAGGCCTTCCGCTGCACCAGCAGCCTCATCTGCCATTTGGAGTTTCCCCGAGGAAAAGG

a score=16485
s chr3            20223756 937 + 160039680 tttgttttAAAAAACAGA--CTTAATTCATTTATTTTCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCA---CAAGATCAGTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTT--TCCAGAGATCGGGGGTCAGGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGT------CATCTATACCGGT---CATCAGTA---------GCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATG--GTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATG-AATGGCT---TGAACCTGGTTAGGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGAACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCACGGCCACGACCTCAACCTCAGCCCCTAAGACCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCTCGGGCCCTCCCACTGCACCTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGAAGCCCATT
s HiC_scaffold_1 119310750 861 + 233722169 TCTTCTCTAAGAAGCAAAgcattgatttaatt-tttttcttgtacaaaAACACT-ACACGGACGC-ACA-TTAGAGCCTGAGTCCTCTGTGTGGAAACTCTAGT-TGGGTGTGCAGGCCCTGGTCAGTGAATTCCCAATTC----------CAAACACTGTCTGTTCTTCCAGAGGTCAGAAATGAGACAGCTGCATGTCTAGCAA-CAGAATCAA-TGCAGCCTTGGTGAAACTG--CAGGGCAGCA---------CTAGTGCAGGTGTAACAGTGGTGGACAGCAGCACCAGTGGACACCAGCACTGGCGGCAGCTTCTGGGGCCCAGGGACCCAGACTATGCTAGTGCCTCTGGGAGCAGGGAGGAGGC-CACCAACACAGAGCTGCAGCAGCCAGTCACCCTACAT--CACACTGGGAGGCCTGCCCAGCTGCTTCCTGCAGCACTCTC-CTGCATGGAGATGGTGGCAAA-GTAACCACCTTAATGGACCCTAGCATGCAGCAAGGGTA--CTCCAAGAA----TGAACATCCTGACCCACACAACCAGCATTGTCCCTGATGGTAGCACACCTGCTCTATGGACCAGA--ATGTGTCTGCATTTATGCAGGCAAAACGT-------------CTTGACAAATGGCCCCATGAAAAAGCCAATG----CTGACTCCTTCATGGGCAGGGGGAA-AGGCAGCTCTCCTCCAGGGACTTGCTCTTCCTATGTTCAACCCAGCAGCCTGACGCAGAGATGCACAGCCA--CCAATGCCTCAGCCTGGTCCCAGGGAGCTGGGCAACCT-------TGGCTCTGACCATAGCCTTGACCCTGAAGGCCT-------------------------CAGC-------TCTGGAGTCTCCAA-----CAGGGCCTCCTGCC-CACCTGGGCCA-CCATCATTTACTCTTTTCTCAAAGAAGCAGTGAATT

a score=28228
s chr3            20540284 1878 + 160039680 ataGTTGAAAGTACCTATCTTACCCCCAAaaacaccattaacaaaataaagggaggagaatggta-tccaaccagaggaca-----aaatattatggcacatgcattattcatcaaaaatgtcctgatgttggacctggaaggaaaatgtgctgcttcttgtctttggcaga--aagatcctaaacgtgactttttcacggttatgtggagggatctcttagataattcctggcgtggcccagacccagtgttcatatggggaagagagtctgtttgtgtttattctaaagaggcccagtctgccagatggctcccttaaagactcgtgagacaa----------tttaacaa------------------gccccttcccgaggggaaaattccctctcagaacctttctc--ttctttgcTCTATAGGAAAAACAAAAGAAA-----------------ATGAGAATGCTGATACTTGGACTACTCCTGATGATA--------------------------AAAACAGATTG-----------------------AGGGTGGACTTGA--TCAGCAACAACTCCTGACCTCA---------------------------------------------------------------------------------------------------------------------------CTGTAAGGTGGCCCCTGCGAATGTCAAGGAGGTA---------GTCAGGCCTCTCCCCACTTTA----------TTGCAGGGATAAGACTGCCTATTTGGGCGTTCGCAGCTTCAAGTCGGGAGGCTTTCACCCAAACTGGGTTTGTGTCTCAAAGCCAAAGCCTCTACCTGCTCTACCGGATGATAAAT---------GTCCTAAG-ATTGTA---CCTTTGTGGATCAAATGAATACCATCTGTTATACATCTTTCACAGAAAGC---TTCAGAGATGGAGTACCCTATTTTATTGCTATACCTCATACAAAATATTT----GGGCTCCTTTGGCAGAGATTGATTCACTATTCTTCGGGTGCTCAGTTCAAAACAAAAGTATGCGCAAGCTTCTTGCCATGCGCCAATAGGCAGACAGGCTTGTTGGCCCCA-ACCCACCCCATACATGTGTCAGATGAGGAT---CCTAATGACCAGGTTAGAGACCTGGGCGTACAAGTACAGATTCAAGCCAAAACTG---ATAACCTTTTGCCCCATCTTCATTATCACCCTCTTTTATCACCCAAACCAAGAGGCATTAATGTGGACCCTCAAATCTCTGAGTTCCTTGCAGTTACACATGTCACCCTAAATTTCTCCAATCCCTCCCTGGCCAACGACTATTGGTTGTACCTTGCACTGGGTGCCTCCTGGTCCCTAGTGGTTCCTTTGCTTAATTATTCTGTCCC----TTATTTCAGAAAAGAAGATTGTAACTTTCTAAGGCC--------CTTTAAGCTTCTACCAACTGGTTTTAATGCATCTACTTGCTTCTTTAGCCCCTATAAAAATAAT-TCTTTGCTATAGATCTTGGATTGGCAGTA--TTTACCTCCtatatttattatattaatatttCTGAGCCAATTTGCCTGGGCAAGGGTAGAGTCTTTGTGTGTGGAGACAACATGGCCTATCCTTTTCTCCCTTTAAACTGAACTGGGCCCTGTGTCCCGTCCACGCTTTTGCCAGACATTGAGATCCTCCAAGGAGATCAGCCTGTTCCCTTGCCCAGTTTTGATAACTTTTCCCCCAGGCATAGGAGGGCAATACAATTTATCCCCCTACTCATTGGGCTTGGGATAGCTGGAACTCTTGCCACTGGCTCGCCTGGCATTGTGGCAGCTGCACATACCTATAATAAACTATCCCAAAGACTCATAGGAGATGTCAA--TATGGTTTAGCAGTCTGTCAAAGATctgcaggatcaggtagattccctggctgaggtggttctccaaaatagatgtggactagatctaattactgtc-aacatggaggcatctgtttggttttacagggaaagtgttgtttttatgcagacaagtccaggattaTGCGCAACCCAACCCCAAAACACCAACAAGAATT-------AGAGAAGAGATGTCAGGAACTtttcttt
s HiC_scaffold_1 160299072 2133 + 233722169 ATAGTTGAAAGGGCACTCCTTTTCCTGAAACTcactgtaaataaaataaaaaagggggaatagTACTTCAAAAGGGGGTCACCTAGAAATATcttatctcatgccttattcatccttaatttttaaaatttggatgctgcTGGACAAACAGCAAACACccatttttggcatactgaaaacCAAAGC---AATTTGCTTCCGTACTATGGAGGGACCCCCTGACTAACTCATGGCATGGTCCAGACCCAGCCCTTATATGGGGACAAGGATCAGTATGCATTTATTCTAAAGAGATGAAATCCTCAAGATGGCCCCCAGAATGATTggttaaacaaatagatcaaattcaacaaatagaggataattttacagatgactccagggATGAAAATGCCCCCTGAGAGACTTTTTCCATCTCTTGTTTTTCAGCTGATGAAACCGGGAGCCTGGATCTCGTCCCTatgggattattattattattattattattattattattttttgagacggtgtctcactatgcagtccaggctggccttgagctcactttgtagcccaggctggtcttgaactcagaaggatcctcccacctcagcctccggagcgctgggattataggcatgagccactacacccgGCTGGGATTATGGTGATTCTACTGCTGCAGGAGAGGGAGGTTTTGAACCCCCTTCCAATGCCAGGGCTCTGGCTGCCACTCTGTTGGGTTCCCCATGTGAATGTGAGGGAGGTACCATTACATATCAGTCCATCTCTTACACTAAAATGACAGATTGTAATAATAAGATGGCATACATTACCTACAGATCCCTAACAGCAGGAGGCTACTTACCAGAATGGATATGTTACTCCAAGCC---TCCTATGACCCCCAAAATTAAGGGTCAATTAAATCCATGTCCTAAGGAATGTAAAACATTCCAGGAGTCAATGCATTCTTCTTGCTATACCTCTCTACAAGAATGCACATTTAACAATA---TGACATATTTTACAGCTATAT----TGCAAAAAACTTCCAGAGGTACTTTTGGAGGTGACTGGGCCAATACTCCACAAGTTTTAGGCTCA---CAAAAATATGCCCAAGCTCCATGTAATGGTACACCTGGAAAACCAGTATGTTGGTACCGGACTCTGCCCATTCATATTTCTGATGGTGGCAGACCACAAGTTAAAATCAGAGAACATATGGTGCAAGAAT-GAGTCAAAC--AGATTGTAGATAAAATGTTCCCTCAAATTCACTATCACCCCCTGGCACTCCCAAAATCATGGGGAGTTAATCTAGATGCCCATAATTCAGATATTTTAGGGGCTACTTATAAATCCCTGAATACCTCTAATCCAACTTTAGCTGAAGATTTTTGGCTATGCATGGCCCTAGGCACTCCCATGTCCCTTGTACACCCtcag-------attctacctcaccatcATTTGAGGAACCAAACTTCTTAAATTGTAGTGCCAGCCTCACCTTTAGAGTGCAGGCTATAGGTTTCAAAGATTCCCCTTGCTTGCAGGGAAGTTTTCAAAACAATACCTCTGACCTTGATGTTGGGTTCGCATCACCTTCACTAACTTCAGTTGTATAACCAACTTCACTACTCCATTTTGCCCTGCCAGGGGACAAGTGTTTGTCTGTGGAGGAAACCTGGCCTTCACATACCTCCCTACCAACTGGTCAAGGATATGTGTCACATCCAT-TTGTTACCTGACATAGAGGTGTTACTCGGAGATGAGCCCATTCCTATTCCTAGTTTTGATTATGCCACTGGCTGCGCTAAATGAGCAGTGCAACTCATCCCCCTACTAGTTCGGCTGGGTGTTTCAGGAGCCCTGGAAACAGCATCTGCAGGTATTAGAGTCGCTATACATTCCCATGTCAAATTATCTAACCAGTTTATAGATGATGTTCAGGCCTTATCTAGCA--CTATCCAAGATGTCCAGGACCAGTTAGACTCCCTTGCAGAGGTGGTTCTCCAGAATAGGAGAGGACTAGATCTTTTTGCAGCAGAACAAGGGGGGATTTGCTTAGCCTTACAGGAATGCTGCTGCTTTT-TGCAAACAAGTCCGGCATTAAG---------------AGACTACAAGAAGACCTGGTAAAAAgaagagagctatttgaaaacccTCTTT

a score=12363
s chr3           20541174 930 + 160039680 CCCATACATGTGTCAGATGAGGA---TCCTAATGACCAGGTTAGAGACCTGGGCGTACAAGTACAGATTCA-----AGCCAAAACTGATAAC--CTTTTGCCCCATCTTCATTATCACCCTCTTTTATCACCCAAACCAAGAGGCATTAATGTGGACCCTCAAATCTCTGAGTTCCTTGCAGTTACACATGTCACCCTAAATTTCTCCAATCCCTCCCTGGCCAACGACTATTGGTTGTACCTTGCACTGGGTGCCTCCTGGTCCCTAGTGGTTCCTTTGCTTAATTATTCTGTCCCTTATTTCAGAAAAGAAGATTGTAACTTTCTAAGGCCCTTTAAGCTTCT-----ACCAACTGGTTTTAATG---CATCTACTTGCTTC-----TTTA--GCCCCTATAAAAATAATTC-TTTGCTATAGATCTTGGATTGGCAGTATTTACCTCCtatatttattatattaatatttCTGAGCCAATTTGCCTGGGCAAGGGTAGAGTCTTTGTGTGTGGAGACAACATGGCCTATCCTTTTCTCCCTTTAAACTGAACTGGGCCCTGTGTCCCGTCCACGCTTTTGCCAGACATTGAGATCCTCCAAGGAGATCAGCCTGTTCCCTTGCCCAGTTTTGATAACTTTTCCCCCAGGCATAGGAGGGCAATACAATTTATCCCCCTACTCATTGGGCTTGGGATAGCTGGAACTCTTGCCACTGGCTCGCCTGGCATTGTGGCAGCTGCACATACCTATAATAAACTATCCCAAAGACTCATAGGAGATGTC--AATATGGTTTAGCAGTCTGTCAAAGATctgcaggatcaggtagattccctggctgaggtggttctccaaaatagatgtggactagatctaattactgtc-aacatggaggcatctgtttggttttacagggaaagtgttgtttttatgcagacaagtccaggattaTGCG
s HiC_scaffold_1 93583389 933 + 233722169 CCTGTCCATGTTTCTGATGGGGGAGGCCCCCAAGACAATATCAGA------------CAAGAATATGTTCACCAATGACTAGAAGAGATGATAGCTATTCCCAAAGATCAATTATCACCCATTGGCACTCCCCAAACCTCGGGGAGTGGACCTAGATCCACAGACCTATGATATTCTTTTAGCCACTCAAAAGGCACTTAATGTCACCAACCTTAACCTGGTAAAGGACTGTTAGCTATGCATGGCCCTAGGCACCCCTATGCCAATAACTACCCCTCCA-------ATTCAACACCTATCTCCCTAGGGGACTCCCCCAACTGT---ACGcctggccagccacttcctgtccAACCAGTGGTAATGGCCAATTTATCTGTCCCATGTATTCAGGGCTCTTTTGCAAATGACTCATTCGTCATTGATGTGGGCCCCCTCATATCCCCTGGCTGCTCCCAATTTGCCAATTACACTGAACCCTTATGCCCCCTCTCAGGACAAGTGTTTGTATGTGGGGCCAATCTGGCTTACCCTTTTCTCCCATCCAATTGGTCAAGAATATGTATGCTAGCCACCACTTTGCCTGATATTGATATAATTCCCGGACAAGAGCCTATACCCATACCAGAATTTACCTACATCTCTGGCCACAAAAAAGGAGCAGTGGCTCTCGTCCCACTTCTGATAGGAATGGGTGTCACCGGGGCACTGGCCACCAGTACAGCTGGACTGGGTGTCACCCTAGACAAATATACTGAGATCTCCAACAAGCTGTCAGAAGATGTCCGGGCCTTGTTCGCCACCATATGGA--CCCTCCAAGATCAACTAGAT--CATTGCAGAGGTGGTCTTCCAAAACAGACAAGGGCTAGACCTCCTAACTGCAGAATAGGGGGGAATTtgtcttgccttacaggaaaaatgttgcttctgtGTTAACCAGTCTGGCATCATatg

a score=9335
s chr3           20542549 182 + 160039680 tGGAGCACCTAGAATGGAATTCTGCCCTACCTTCTCCCCTTCTTTGGCCCAGTGCTTGGCTtactaattctactatcactagtaccttttctttttaataaaattatggcctttattaagggacaaatagatgcaattaaggcccaacccttacagattcattaccaccggctggCAATGAC
s HiC_scaffold_1 49969679 182 + 233722169 TGGAGCACCTCGGATGGAATCCTGCCTTATCTTCTTCCCTTGTTTGGACCTTTGCTTGGACTGTTAATTTCACTTTCATTAGAccctttcctttttaataagtTGATGACTTTTGTGAAACAACAAGTggatgccataaaaatgcaaTCTATACAGGTCCATTACCACAGGCTTGAATTGAC

a score=6737
s chr3            20670624 131 + 160039680 CCAATGCCAAAGTTTTTGGGTCTTTTCTCAAACAAAGGTTTGACCATCTCTTTGGCCTCCTGTTTCTTGATGATGGCAGGGGCTGGGGCTACCTTCATTTCTTTGGGCACCTTGCTTGTCTGATAGAGAGA
s HiC_scaffold_1 194460178 131 + 233722169 CCGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCCGGTGCCACCTTCTTCCCCTTGGCTTTCTTTCCTTTCGGCtgggcaga

a score=10377
s chr3            21113528 277 + 160039680 atctaattttctaccAT-----TTTACCCCTTGATCAGATGTTTGCAGAGCAACTCAGGATCACT---TAGTGGTGGCTCCAACCTAGTCAGTGGCCTGCATTGTGAGAGTTGCTGAGCAGTCCTCAGTGGCTGGCTGTGCACTCCAGTCTTCAATAGGAAAATGATGAATGGGAACAGAGGATACCCACACACCATCAGACGGGTCATCCACCTCTGGTTGAGCTGCATTGAGCTCA--------GGAGCTGATGTAGTCTATTTGCCTTGAAATTCCTCCCTTGGTCACAG
s HiC_scaffold_1 207928453 273 + 233722169 attttattttttatcaaccTCATTCCCACTTTGCTGAAGTGTTTCCAGAACAGCTTAGGGCCATTCGGTGGTGGTGGTTCCTACACACTCAGTGGCCTGCGCGGTGGG-GATGCAGACCAGTCTTCTGTGGCCGGCTGAGCACTCCAGTCTTTGGTAGTGAACTGCTGGATGGGCACAGAGGGCACCTGCATGCCTTCA------------------GGCTGAGCAGCATTGAATAGAATTTTAATGGGGCTGGTGCAGTCCATTTGCCCTTAAATT-CTTCCTTGATCACAG

a score=4921
s chr3           21349545 236 + 160039680 ATGTGCAGAG--TCAGCTTGAAATGGTTTCAATAGCCTTGAGTGGTAAATGCCACAATTGCCCCTGAATAACCCCTGTGGATTTTTCCGTCATAGTTTCCCAGCATCCTATAAATAGACAAAACCATTAGAGTGCTCTGTGACAAACATGCTAGCTGAACTTTGTCAGGAACATT---TCAGCTTTTGAGATTAGCTCAGGAAAGGTAAAGTATATTCTAGCTTGGATAAAGTCATTTGTT
s HiC_scaffold_1  9239795 231 + 233722169 ATCTGCAGGGATTCTGCTTAACCTGACTGCCA---CCTTAAATTTTGACTGTCATAATTGCTCTTGAGTAATTCTGGTCAGTTTTTCCCATGTAATTTCCCAGCATAATATGAGTAAACAAAATCATTCAAGT--TGTATAGGGAGCTTAATGGCTGGATACTTGCTCCAAGATTGAGCCTGAATCTGAAATTAACTT--GACAAGCCAGTTACATT---GTCTAGAAAAAGTCACTTTTT

a score=7151
s chr3           21349580 402 + 160039680 TTGAGTGGTAAATGCCACAATTGCCCCTGAATAACCCCTGTGGATTTTTCCGTCATAGTTTCCCAGCATCCTATAAATAGACAAAACCATTAGAGTGCTCTGTGACAAACATGCTAGCTGAACTTTGT------------CAGGAACAT---TTCAGCTTTTGAGATTAGCTCAGGAAAGGTAAAGTATATTCTAGCTTGGATAAAGTCA--TTTGTTCTGACCACATTATAGA-ACCCTATCTTTCTATCTCGAATTTCAGGGATTCACTTGGCCTGGCTGCCAACCAGGGCTGTGCTTCTGTCTATATAAACCTCTCAAAATATTACACTCTATGA----AAATCTCAGGCTACATCTTTGCTCTCTCACTACTCCCTGGAGCTAAGGCTCATGCAACAGAAACAGCTTATTCTAGAACATA
s HiC_scaffold_1 61252474 399 + 233722169 TTTAGTTGCATCTGCGCTGATTACTCCTGAGTAACCCTGGTCTGATTTCCCTGCATAGTTTCCTATCATACTGTAAGTAAACAAAACCTTTAGGGTGGTATGTG--GAGCTTTGTAACTGATCCCTGTTGCTGCCAGTGCCAGGAATATGCCTTCTGTCTGTGGTATTAGCTTGAAAGAAGCCAGGTACATTCTGGCTTAGATGAAGTCACTTTTACCCTAAC--GATTATAGACATTCACTCTCTTTGACCTAAGTCATGAGAATCTA----------TCACCACTCAAGACACAATTTCT---CAGATGTTCCCCATAAATTAT----CTGTATTATCCTGGATCT--GTCTACCTCTTTAGTCTCCCA--GCATCTCGTAGCTGGTTCTCACACACAAGGACTGGATTTCTTCAGAGCaca

a score=7854
s chr3            21498438 177 + 160039680 CCCCTTGGCAATGGGCAACAAGACACTTTCTTGTTG---TTGTTCTTGTATCAGTCAGAGGCAGAGCAGATAGCTCTCCTTTGTTCATCTTAGCTTGATGCCTGACTTGGTGGTAAAAACTGTATTGTTCCTAGGATTCAT----AAAAGTGAAATCAAATCCAGGCAGCACAGAGTGGGTGGA
s HiC_scaffold_1 195809928 183 + 233722169 ccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCTG-TTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggcaataagagcaaaaagggagga

a score=32442
s chr3            22080396 801 + 160039680 TTACATTTCAATTTTTTTCTTTAAAAGGAGTGAGTTGTGTACAGGGGGTTAAATGCTTTATAGACAAGAAAAAAAACTGTGCTAGAACCAACTTATTCATCATCATCATCTTCAtcttcctcctcttcctcatcctcttcatcctcctcatcatcttcctcttccttctTTTTCTTGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCAGTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTTGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCATAGGGCTGCTTGTCATACACTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGACAAGCCAGGATGCTTGCCTTTGATTTTGGGGGCGGTACTCAGAACAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTC-TTTCACAACGAGCCTTTTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCACATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCATGAGGCATAGAGTCGCCCAGTGTCCGTCCGCTGGCGCTGTCTCTATGGAGCTCAATGTACTG
s HiC_scaffold_1 121717943 697 + 233722169 TtacttttcactgtttttctttaaaatgaatgagTTGTGTACAGGGAGTTTAATATTATATAGACAAAAAAAA----TGCACTGGAACCAAGTGATTCATCATAGTcattttctgtttcatctttgTCCTTATCctcttcatc------------ttccttttttttctttttc------------gtcttgacagcttcctttctctc--catcAGGTTTTCCTTTATTCGGGAGACAATGATGTCTTTCCCACACTATTCCTT-AGTGCGGCAGCCTTCCCCTCATAAGGCTGCTTGTCATCTGATGCAGTGTCCTTGCACATTTCTCCCAGTTTCTTTGTGAAGTCACCAATGGCAAGGCCAGGATTCT--CCTCTGAGCTTTGGAG-GATACTCAGAACAGAACAAGAAGGCGGCCAGAGGGGCCC---CAGGCTCACTGGGATCCTTGAAC-----TTTGGT-TTTTCTTTAGGAGGAatgtaagttttcatttctcttttcataaTGG--CTTCTCCATCTTTGCCGTGTCttcaaattttcctttctctttagcaGACATGATCTTCCATTTTTATGAGCGCTTCTTAGAAAAGCCTGAGAAGTTAATGGAAGCATCTGAG------------------------------TGTACAAAGAATGCGTATGATGACA-TTTGCCCCCCAGCTTCTTAGGCCCTCCTTTG-CCATGCCCATCTGGCTCTC---------------ACTTGCC-------------CCCGCACTGTCTCTGTGCAGCTCCAtgtactg

a score=32992
s chr3           22080489 761 + 160039680 TATTCATCATCATCATCTTCAtcttcctcctcttcctcatcc---tcttcatcctcctcatcatcttcctcttccttctTTTT-------------------------------------------------------------------------CTTGCTCT---------------TTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCAGTTTTCCTTTAGCTCTGTAGG---CAGCAATATCCTTCTTGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCATAGGGCTGCTTGTCATACACTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGACAAGCCAGGATGCTTGCCTTTGATTTTGGGGGCGGTACTCAGAACAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCACAACGAGCCTTTTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTT---GGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCACATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCATGAGGCATAGAGTCGCCCAGTGTCCGTCCG-------------CTGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCAGACGCAGCCTCCTCACTCTCTCCGCTCTG
s HiC_scaffold_1 13381756 843 + 233722169 TATTCATCATCATCACCTtcatcttcctcctgctcctcctccgtctcttcatcttccttctctttcttcttttgttattttttattttggtacaagAATCAAGTGAACAGAGAggctacttgccaggcaggcgctgtgctgctgagccgtGTCCACCTCGCTCTCCTGttcctctctgctctctgcctTGACATCTCCCTGTTTTGCCGCACCAGGCTTTCTTTAGCTCGGTAGGAGGCAGCGACGTGCTTCCTGTGTTTTCCCTGCAGCTTGGCA-CCTTCTCCCCA---GGCTGTGTGTCACCTGCTGCAGTGTG--CCCACTTGTCTTCCAGTTTCACAGCGACATCACCCCTGGAGAGGCCAGGATGTTCTCCTTTGAGTTT-TGGGTGGCACTCGGAAGAGAATAAG-----GTCTGA--GAGGCCTCTTAGGTGTGTTGGGATCCTTGAGCTTCTTTTGCACTTCTCCTCT-AGGGGAacacacattttcatttctctttcacaGCAAGCCTTGTCCACCTTTGCTATGTCTTCAAATTGTC------CTTCAGCAGACGTGACCTTCCACCTCTCTG-GCACATCTTAAGAAGAAACTCTGAGAAGTCAGTGGAAACATCTGGG---TTCTTCTTGTGCTCCCCTCTGCAAGTTCACACAGAAGAGGCCTATGAGGACA-TTTGCCCCTTGCCCTCTTAGCATCTCCTTTGCCCAAGTCTACTTG-TTTTTTTCTGGGATGCACAGATTCTCCCAGTGCCCATCAGGCTCTCACTTGCCCTGGTGCCGTCTCTGTGGAGCTCAATGTACTGCAACAGCTG-GAGAGTAGGAGTCAGAAATAGCCTCCTTGATCTCCCTGCTCTG

a score=19458
s chr3            22080524 592 + 160039680 ctcatcctcttcatcctcctcatcatcttcctcttccttctTTTTCTTGCTCTTTTCAGCCT---TGACCACC----CCCTTTTTCGCTGCATCAGTTTT-CCTTTAGCTCTGTAGGCAGCAATATCCTTCTTGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCATAGGGCTGCTTGTCATAC---ACTGC---AGTGTTGTTCCACATCTCTCCTAGTTTCTTTG-CAACATCACCAATGGACAAGCCAGGATGCTTGCCTTTGATTTTGGGGGCGGTACTCAGAACAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCC---TTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCACAACGAGCCTTTTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCACATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATG
s HiC_scaffold_1 116832060 600 + 233722169 CTCGTTCTTATCAtcatcttcttcctct-cctcctcaaTCTTCTGGTTCATATTTTGAGCCTATTGGGCTATCAGGACTCTTCTTTCCTCCTAGACTTTTGCCGTTGGCATGATATGCAGCTATATCCTTTTCATATATCTCTTTTAGCTTAGCTGCTTGTTGTTCATATAGTTGTTTACCTTGGCTGACTGCTCAGACCATATTTCATCTCCCACCTTTCTTTTTCATCAGTATCTCCAATGGACAGGCCTG--TGTTCACTTTTGATCTTTGGG-CAATAttcagagcaaaacagaaaaaagaaagatggtgGTCTTTTAGGAGCatttagg-----aaatttttttctctcatcacCATTTTTGGGAGGACCATAATTTTTCACCACCTTGTCATAGCAAGCTTTATCACTTTTTGCCGTATCTTCAAACTTCAACTTTTCCTTGGCAGACATGGTCTCCCATCCCTCCAAGCACTTCTTGGAAAACTTCACAAAGTTGACCAAGGAGTCAGGGTGCTTCTTCTTGTGCTCCTCATAGCAGGTCTACACAAGGCATACA-AGGCATACACTTTGTCCCATGGTTTGTTGGGGCCTATCCTGACCATG

a score=33927
s chr3           23952072 1330 + 160039680 TCAGAGTCTGATAGGTAACAG------AAGGGGAAAGCAAACCCGAGAGAGTCCCTAGAGTCCCGAGAGCCTCTCCTGGTGGGTCTAGTCACCATC-----TGGGGAGGAGACA-----------------CAGT-----TCTATAAACT----CCATAATCA--------GTGCAGAGAGGCCAACACCTGGAAGCTGCC-------------------------TACCACTGATACCAAACAGGGATTGAATGGCAGTGGAGGCACAGGCAGCTTCA---TTGTGCTGCCTGCCTTTGGAGACAA---GGTCATTGCCATGAAAATGATGGG--CAATGCAATGTCTCAATGTAAAGAACAGATACAGTTTTATTAACAGGAATGACAAAAAGCAAGACACTCCTGTCTACTAGGCCACCATAAGGAATAAG---CTCAGG-----------CTGTGCAAGGGTTGGATATATGGCTGCATTTGAT--------------------------------------------------------CCCAGTTCCAGGCAGCCATTATCCAGCCGACTATAGACATTAGAGCTGCCATTTATGTAATCCCTGGGTTCTTCCACACAATTACCAG---------------------AGTGAAGAAAGTAATGCTAGATGGGAGAGTGGTTC-GAAGGCTTGTCCCAACAACGCAGGCCCTGCAGCATGAAAGGTGATCATAGGAAACTATGCA-ATACCCTATCGGCATCAACAACAATATTCTAACCCTCAAGTATAGGTGGAGTGATGGAAGGTACTGACAGCCCAGGTCCAGGAGAGCA-GACAGACCAGTGAGACATAATATGCATCAGCGTTAAAGACCTGAATTCCACAATGGCCATCCTCTCTGAAGTCTGCA-AGGAAGGAGTAGGATCGACAGGACAAAGAAAGT---GCAGATGACAACTAGGGCCAACAGCTACCACAAGATCAATGATGTTGTAACTTCAATAGCTAATTTCAGATGGCCAAAGAACCCTAAACTACGGGAGGGCAGAGACAAA-GCAGCTGATCCTGAGGCTGAGAATTCTTGTGCTCACAAGTCTGAGCAGGGCATGGCTGAGTGAATTTTGGCTTATATTCTCTACCATCATCTGCTTATTCACCTAGCAAAAAGACATGAACATGAAACTCTATCTCTCAGAGATTGGC-AAAGATTGCAACTGAAGACCAT-----------------------------------------------TGGTCTATTTAGCATG----TTGTTTTAATTATTTTTAGGTAAAGATG--TTTTTTGGGTAATGATAAACAACAGATTTTTGTTTGTTTTTAAAGCATGTTTTTGATTACTTTTTGTTTTGTTTCTTGTACTCAATGCACATATAAAGGTTTTAAAACTAGTTAATGTCTGGTCAAGGTGAGA-TTATATGAACTTCGTTTTTAATTTTGAATAAGATCTTAAAACTTAAT------------AGCCAACAACCTCCAAACATCTGTCAGTTGAGGTTTTAA--Aataaataaa
s HiC_scaffold_1 67924750 1514 + 233722169 tcagagTTCGATTGGTAGCAGCAGTGAGAGTGGAGAGCAGACCACAGAGAGCCCTGAGCAGCCCCACTGCCACGCT-----GGCCTAGTTACCATCACATCCCTGAAGGAGGCAGCTGCCACAACCAGCCCCAGTCACCATCCATAAGCTGCAACCATAAGCACCAACCATAAGCAGCGAGGCCGAGACCCAGAAACCGCCACACCTGCACGGCCCCCGCCCTCAGCGCTGCTGACACCAAGCC---------------CTGCGGCCAGGGTGGCCTCAGATCAGCGCCACCTGCCGGCGGGGACAAAAAGGTCATCACAACGAAGGTTTTGGGAACAGTAAAATGGTTCAGTGTACGGTACGGATGTGGTTTCATCAACAGGAATGACACCAAG-GAGATGTATTTGTATACCAgactgccataaagaagaaaaaccccAGGAAGTGCCTTCCCAGTGTAGGAGATGGAGACACTGTGGAGTCTGATGTTGTTGAAGGAGAAAAGGGTGCAGAGGCAGCAAATGTTACAGGCCCCGCTGGAGTTCCAGTTCAAGACAGT-ACTATGCAGCAGACCGGAACCATTACAGATGCTCTCCACGTGGTAC---GGGTCCTCCACGCAATTACCAGCAGAATTACCAGATTGTTGAGAGTGGGGCAAAGAATGAGGGATCAAAGAACACTCCCAAAGGCCAGTCCCAGCAATGC-GGCCCTACGCAGGCAAAGGTTCCCATCTTACTACATGCGGAGACCCTATGGGCGTGCACCACAGTATTCCAACCCTCCTGTGCAAGGAGAGTGATGGTGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGGAGACAAGTGAGACAAAATATGTATCGAGGCTATACACCACGATTCCGCAGGGGCCCTCCTTGCCAAAGACAACCTAGAGAGGACGGCaatgaagaagacaaggaaaATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAGCGTGGGCACCGTTG-AACTTCAATTACCGAGG-CAGATGCCCAGAAAACGCTAAACCACAAGATGGCAGAGACAAAAGCAGTTGATCCACTAGCTGAGAATTCGTCTGCTCCGGAGGCTGAGCAGGGCGGGGCTGGGTAAATGCCAGCTTAATATCTCTACCATCATCCAGTTAATCATCCAGCAAGAAGAAACAAATAggaaagtccagcaataagaaatgaacaaaagattAGAACTGAAGACCTTAAGTGCTTGCTCTTTACCTGTTGACCACATAACTAGAACTATCTGCATTATCTATGCagtatgaggtttttttttactatttttacctaaagatgtctttttttggtaatgacaaa---------tgtgtttttttaaaaagcctgattTTT-------------------------CTCAATAcacttttaaaggtttttaaattgtttcatatCTGGTCAAGTTGAGATTTTTAagaacttcatttttaatttataataaaagtttacaacttgattttttcaaaaaaagtcaacaaaCTGCAAGCAACTGTTAATAAAGGTCTTAAgtaataaataaa

a score=97095
s chr3           25210743 1889 + 160039680 aATCACATTTTTTTTTTTTT------TAAAGAATGGAACTTTAATCTTTATTTACAGGACATGACAGGGTACGAAATTCCACATAGAAATAAA------TTCAGAGGACA-GCTTCATAGAGTATGTACAGTTTATAACTGTT------------------------------------------------------------------------------------------------------------------------CAAGTATAGTTTCTTTTGTAAAAAGTGCTACAATAACAAACCACATTTAAAAA---------GAGTTCTTAGTAGAGAAACAGTAAGACAAATCTATGA-GAACACAGAATAGCACAGCACATAGCTAACAACTTTGTGCCTTAGCTGGACAT-TAGAAGTTAAAGGTCCCAGGAGCTCCATCCTGAACTTGGAAGGCGAAGCCTTCAGAGGTAGTTTCTGGCACCACATTTTGATCTTCCTCTTCCTCCACTGAGAAGTACTTCTCAATTAAGTTCAATGAGGCCTTGTATACAGACTCGTTTTCATGCCTCTGTAGTGCTTCAATTTTATCCAAGCCTCCACACTCTTCAATCATTATACTGAGCTTTTCTGTCTCACCTAGTTTCTCTGCAGCCTGAAAGATATTTGAAATGGCGTCAAGAATAACCTGAATAATCTTGGTATCTTTTGCACTCAGGAGGTTCATCAAAGGTTCTATTATCCCACAGTGAACGAGATACACAATCTGCTCAACAGTCCCACCGCTGGTATAGTTGGTTATAGCCCACGCGGCCTCCTTCTGTGTCTTAAAGTCCGCCTTAGAGAGGACACCAACAAGAAAGGGGACTAGGCCGTGATTCACAACTTGCTGTATCTGGTCCTGGCGTCCAGCTGTAATGTTCGACATTGTCCATGTGGCCTCCTTCTGAATATTAGTTTTGGGGTTTGTTAGCAGGCTGGGAAAGACTGCAAGTGCTCCTGCATCGATCACTTTCTGAGTCTGCTCATCTGTTCCAGTGACAATATTCCCTATGGCTCTTAGTGCGGGAGTCACAATGGGCAGTTCAGTAGCTCCTAGAAGCTTCACAAGTTGGGGAACAACTCCTTTCTTCACAACCATCTCAATGCGCTCATTTGGACCATCAGTCAGGTAGGAAATGGCCCAGCAGGAATCTGCCAATACTTCTGGATCATTGTGGTGCAGGAGTCGAACTAACGTAGGAAGAATCTGCTCAACGGCATCTAAGGGAGGTGCAGGGTTCTTGTTTCGACAAAGGTTTGAAAGCGTCCAGGTAAGATTACGTAAGTAACCACATGCCAAGGTAGACAGATCGGGAACTGCAAGAAGTGCCAACAGTGGGTCAATCGCACCGTGTTTGATAACTAAGTCTCGGAAAGCTGAACCATCACCTGCAATGTTTCCAAGAGCCCAAACAGCTTGCTCGCTGATGTGAGCATGAGGAGATGCCAAGAGAGAAATAAACGCTGGGATAGCACCTCCATCCACCACAGCTTTGGTCTGTTCAGATGTTCCAGAAGCAATGTTGGTGAGTGCCCAAGCAGACTCAAACTGAATAGGACTACAATCAGTTTTGCCCAAGAAGGACACAAATTTTGGGATCAAACCAGCCCGGATGATGTTGTCTATAGGAGGCTGTTTCTCTCTAGAAAGCAATTTCCGAGCAGCTTGAGTAGCTTGGAGCTGGCTTTCCAAAT---TGTTACTGTTTATGCCTTTAACAATGTCCTCAACAGACCAATTTACAGTACCCTGGTTGTTCCGGTTTTCCTGTAGCGGAGAAGTAGCATCATCAGGAAAGGAGCTGACGTTTCTTCTTTTCAGCATCTGCTCATCTTTTTTAGCTTTCCTGAGTTCCACATTAACTTCTATTCGACGGCGACGCATTTCTGTGCTGTCCTTCCCCTTGTTCTTGAACCTGTTAAGTCGGGCAGCTGGTAAGTTAGCATTCTCGTTCGTGGACATGGCTGCAGGAACAAGGAGGAAAGCTGT
s HiC_scaffold_1 61648080 1974 + 233722169 aattcccttttttctttttggtaaagcAAAGGGTGGAA-TTTAATCTTTGCTTATAGGACACTGCAAAATGTAAAATTccacacagaaataaaaactccTTGAGAGGATAAGCTTCATACACTATGTACAGTTTGAaactgttggggctgggggtttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcaatccccggtaccgataaaaatgaaaaagacaaaaaaaaaaaaaaaaaagaaactgttcaagTACAGTTT-GGTTGTAAGAAG-GCTGCAATgacaaac-acatttaaaaaaaaaaaaaagagttcttagTAGAGAAA----GAGACAAACTTATACCAAACACAGTA---CACAACAAA-AACTGATGCCT-----CCTCAGCTGTATGCCTAGAGGTTAAAGGCACCAGGA-CTCTGTCCTGAACTTAGAAAGTGTAGCCTTCAGAGATAGTTTCTGGCTCAGTGTTTTGATCTTCTTCCTCCTTTACTGGGAAATACTTCTCAATCAAGTTTAATGAGGCCTTTTACACAGACTCATTTTCATGGTCCTGTAGAGATTCCATCTCGTCCAAGCCTCTGGATTCTTTGATCACTACACTAAACT---CAGTTTCATCTATTTTCTCAGCAGCCTGAAAGATACTT------------AGAACAA---GaataatttttgtatcttttgcaGTTAAGAGGTTCA-----------------ACACAATGAACAAGGTATACAATCTGGTCAACTGTCCCATCACCCGTATAGTTGGTCACGGCCCAAACAGCTTTCTGTTGTGTCTTAAAGTCTGCCTTGGAGAGGACACTGACAAGGAACGGGACTGACACATGATTTACAATGTGCTGTATCTGGTCCTGCCAGCCAGCTATGATGTTTGACAT-GTCCATGTAGCTTCCTTCTGAGTATTAGTTTTGGGGTGAATGAGCAGGCTGGGAAAGACAGCAAGTGCTCCTGCATCCATTACAATCTGAGGCTGTTCATCTTTTCCAGTGACATTATTCCCTATGGCTCTTAGCGTGGGAGTCAGAATGGATAATTCTGTTGATCCTAGAAGCTTCACCCGATGGGACACAATTCCCAGTTTTACAACCATTGCAATGCGTTCATTTGGACCATCAGTAAGGTAAGACACAGCCCAGCAGGTATCTGCTAATACTTCAAGATCACTGTAACGTAGAAGATGAACCAAGCTAGGAAGAACATGGTCAACAGCATCTAACAGGGGTGCAGGATTCTTGTTACAGCAAAGGTTTG-AAGCATCCAGGTGAGATCATGTAAGTAACCATCTGCTAAAGATGACATATCTGAAACTGCATAAAGACCCAAGAATATGTCAATTCCACCATATTTGATAACCAAGTCTCAGAAAACTGAACCATCACCTGCAATGTTTCCTAGAGCCCAGACAGCCTGTTCACTAATGTGAGCGTGGGGAGATGCcaagagagaaatgagtgctgAGATAGCACCTCCATCCACCACATCCTTGGTCTGCTCTGATGACTCAGAAGCAATCTAAGCGAATGCCCAAGCAGACTCAAAATGAATGGTATTCCAGTCGGTTCTGCCC---AAGGATACAAATTTT-GAATCAAAACAGCCTGGATTATGTGATCTAT-GGGGGCTGTTTCTCCCCAGAAAGCAGCTGCCTCCCAGCCTGAGTAGCCTGGAGCTAGCATTCAAGATCACTGCAACCATTTATATCTTTGATGGTGCCATGAACCGTCCAACTCATAGCACCCT-GTTGCCACAGTTTTCCTGCAGTGATGAAGCTGCATCAGCAGGAAATGAGCTTACATTTCTCCTTTTCAGGCTCTGCTCATCCTTCTGAGCCTTCCTCAGTTCCACATGAACTTCTGTTTGTCACCGCCTCATTTCAGTACTATCATTTCCCTAGTTCTTGAATCTGTTCAGCCAGGCAGCTGGTGAATTAGCATTCTCATTGGTGGGCATGGTTAT-GAGACAAAGAAAGCAGCTGT

a score=10142
s chr3            26382532 346 + 160039680 AGCACAGCCAAGCATCAACAGATGAACATAGGACCTTGAATATGGCTAACATCACTTGAGCCCCTCTGGTGTGGTTGTGATGTCATTGCCATTCCCATTTGGTGAGCTCCTGTGGGAAAAAGTGAGCCTGTGCCTCTACACTTCGGTAGACTGGCAACCCTTGTTTGTCTACTGTTTACCACATCACCAGTGCTATGTCATGAGCGTCAGAGAAAATCCCTATGGATATTTCAAGCTCAGGCCATTATGATGTTTCTTAAAACTGTATTTAAAAATTAAGAGAAGTATTGCTGAAATGTGGAACTTGTTTTGTACCATGATTTCTCCCCAGCACATTTACAGTTtg
s HiC_scaffold_1 138617031 307 + 233722169 AACACAACCAGGCCTTTGCAGATGAGTGCAG----------CTATCTAGTGTAATCTTGGCGACTCCTGTGTGGATGC-------------------TCCAGTGTGTTCTTGTGGAAAGCAGCAGGCCTGTGTCTCCATGACCTGGTCATTTGGCAGCCCTTGTCTGTCTTCTCTTTACAGTGTCATCAGTGCCATGTGATGAGGGTCAAAGAAAATGCCTAGAGCGATTTCGAGTTCACATCATTGTGATATTTCTT-AAACTG---TCAAAGAGGGAATGAAGCATTGCTGAAATCTGGAaatttggttgc------ttttctctccttcACATTTGATATTTG

a score=9307
s chr3            26451715 226 + 160039680 AAAAGGAAAAGGTACCCCCTGGAAAAGGGTTAAGAGACATCCTGTTGGTAGTACTATTCCTATATCAGTCAGGAGCCAAGCAGTTGGCAATCCCTTGTTCATCCCAGCTTGATGCCTGGCTTGGTGGCCAAAGCTGTTTTATGCCTAGGACACATAAAACTCAAAATAAATCAAATCAAATCCTGGTATTGAGAGAAGAGGAAGACAGAGACCTGCAGACCGCCTT
s HiC_scaffold_1 195809914 216 + 233722169 aaaagcaaaaagacccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCT-GTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggcaa----taagagcaaaaagggaggattAAAGA-----GCAAACCTCTTT

a score=5267
s chr3            27108982 106 + 160039680 CTGCCCCTA---------CAAGTGTGGCTGCTATGTCACATGTGCATCAGTAGGTGGCAGAGAGA---CAGGCTATTTCTTCACTC--TGTTCTGATTTGTGAACATTTAAATGATTGAT
s HiC_scaffold_1 194511548 120 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGT

a score=5205
s chr3           27243085 265 + 160039680 AGCCATCCTTAATCCAAAATTTTGAGTCAAGTCTTATAA-------GTGGAAAATTCCA-----GTGAACATTTATTTTGTATATAAAATTTTAAACCTATTGTGTGAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTT-ATTATGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGAAAACCCTGGATA-TTCTGGTCCTGAGTTGTTCAGATGAG
s HiC_scaffold_1 68944256 249 + 233722169 AATCCtccaaaatttgaaacttttgatCA-GTATCATGAAGCACACGTGAAAAGTTTCATGTTTATGAAACTTTGTTTCATACATAGA-----------------TAAAGCTATCTTCAGGCCATGAAGATAAGGTGTATATGAGACATAAGTGACTTTTGTGTTTACAATTGGACTTCATCCTGAAAATATCTCAAGTATGTAGGTAGAA------------AATatccaaaaatacaaaatattaaaatatttctgaccTTTAGCATTTTAGATAAG

a score=6920
s chr3            27243089 277 + 160039680 ATCCTTAATCCAAAATTTTGA----GTCAA----GTCTTATAAGTGGAAAATTCCAG---TGAACATTTAT---TTTGTATATAAAATTTTA--------AACCTATTGTGTGAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTATGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGAAAACCCTGGATA-TTCTGGTCCTGAGTTGTTCAGATGAGGGAGAGCCAACCTATA
s HiC_scaffold_1 121707891 292 + 233722169 ATCCAAAATCCATAATTTTGTAGCTGCCAACATGACACCATATGTGGAAAATTCCACAACTGATCTTATATGACTTCACAAGCAAAATATAAgtacataaaaaatattgcataaaatcACCTTCAGAATGTGTATATAAGGTGTATATAAAACATCAATGAATTTCGTATTTAGTCTTGGGTCTCATCTTGAAGATATCCCATTATGT--------TACAAATATTCTAGAatccaaaaacaatgaaatttgaaACACTTCTGGGTCCAAAAATTTCAAATAAGGGATATTCAATCTGTA

a score=4603
s chr3            27243179 156 + 160039680 GAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTATGTATATT-CA--ATTCAAATATTCT-----AATGTCTAGAAAAATGAAAACCCTGGATATTCTGGTCCTG
s HiC_scaffold_1 151548706 163 + 233722169 GGATTTACCTGCAGCCTATGTATATATGGTGTACAGGAAACATAAGTGGATTCTGTGTTTATATTTAGGTCTCATCTCCAAGACATCTCATTATGTATGTGACAATAttccaaaaatctgaaaaaaatttcagaaatttgaaAAGCCTAGG-ATCCTATTCCTG

a score=4990
s chr3            27276091 184 + 160039680 TTGAGTAGCCTT-TGTTCAAAATACAGAAGCAGTAGGATTTAG--------ATTGTTTTCAAAGGTTTGAGAAT--TTGCATATGCATAATGAGGCACCTTTGAGGCAAGACCTGAATCCAAATGTGAAGTCTGTTTAT-CTGGTCATATTCATCTTACACACACAATCTGGTCAAGGTTCTAATTAGATTTTTTT
s HiC_scaffold_1 121437901 189 + 233722169 TTGAGTATCCGTATCTTAAAAGCTTAGAACCAAAAGTATTTCAGATATTGCATTATTTTCA--GGTTTCAGAATATTTGCATATGTATAATAAGATACCTTTGAGGTGAGACTCGTGTCTAAATATGAAATTCACTTGTGCT--TTATACACAGTTCATACACAtaggctg---aatatttttaataattttattt

a score=7115
s chr3           27276100 308 + 160039680 CTTTGTTCAAAATACAGAAGCAGT--AGGATTTAGATTGTTTTCAAAGGTTTGAGAATTTGCATATGCATAATGAGGCACCTTTGAGGCAAGACCTGAATCCAAATGTGAAGTCTGTTTATCTGGTCATATTCATCTTACACACACAATCTGGTCAAGG----TTCTAATTAGATTTTTTTG-------GTGTTAGCTGCAGCCCATTATATCAGACCAGGTCTGGAATTTCCCACTTGTAACATAGTATCAGTGCTCAAACAGTTTCAGAATGGGAAATA----GGATTTCAGAGTTTTGGATTAGGGACATTCAGCC-ATATTG
s HiC_scaffold_1 34376123 321 + 233722169 ccctgtagaaaaaaaaaaagtatttcaggCTTTAAgcc-ttttcagattttggaatatctgCATATACATAATGAGACAGcctgaggatgggacccaagtctaaacacaaCATTCCCTTACGTT-TCATCCGCATCTTACGTAC-CAGCCT--CCAGGGGATTTCATCACGATATTGTACTGTGCCTGCATTTTGACTGTGACCCATCACAGGAGATCAGGTGTGGGATTTTCCACTTGTAAGGTCATGTCAATGCTCAAGAGGTTTCGAATTTTGGagtattttggatttcagattctTGGGTCAAGTGTGCTCCACCTGTATTG

a score=8522
s chr3            27772908 348 + 160039680 TTATTTTGTGACTGATCACTGGAATCCTCAAGATGAACAGATACTGCAGCCGCCACCCTTGTGGGGTCAGCCATTGCTCAGTCATGGAATCCATGTCTGAATTGGAGA----CAGTTTTTTGGTGCCTCAGTGGTCCTGGCATTGATTGGCCTCTTAGCCTTGGC-TCTCAGCTATACTTTCCTGTGGGCTTGTCAGGACAGCCATGTTTACTATAGATCGTTGACATCTGCAGGGGAAAGGTCCTAGGGCCACAAGCAACCGCACAACGCGTCTGTGTGTTGTTGCTATGCTTTCCAGGTGATGACAGTCCCTTGGGCATCTTACTTCTGCTTCC-AGGCCGAAGAGACTGGA
s HiC_scaffold_1 164253763 345 + 233722169 TTACTTT-TGAGTAATGGCTGATATTCTCAAGATAACTGGATGCTGCGACAGCTGCTCTCCTGGGTTTAGGTGTAGTTCCTTCATGGGAACCATACCTGAATTCGCAACATCCAATTTTTAGGCGCCTCCTTTG-CCTGATGGTATTTTCTCTCTTAGCCTTCACATTCCagttatgctttctcttgtttttgccAGGGTAGCCCCATTTTGTGCAG---GTCAGCTTCTGAAGGTCATAGGCTTTAGCGTCTCAGT---TCTGGCAAAATGTATGCATATTATGATGACACTTTCCAGATGGCGACACTCCCTTTGTTa-cctgcttgtgctgctgagaccAAAGAGTTTGAA

a score=4187
s chr3           27798544 187 + 160039680 TGCTATGGTGTGGCTGTGACTTGTCTCCTAAAGATTGATGTGTCAGAAGCTTGATTCAGAGAATAGTGACACTGATAGGCAGTGGACTTCTTAAAAGGTAAGGCTCAATGTAAGCTAA--CATCCTAAGGGTGCATTAATGCTTGCTTGTGGAGA-----AATTCTATTTTCATGAGCACTGAACTGTTATAAA
s HiC_scaffold_1 17727421 187 + 233722169 TGTTGTGCTTTAGATGTGGTTTGTCCCCCAAAGGTTCATGTGTTAGACGTTTGATCCTCAGTGTAGTGACAATCAGAGAGTGTGACCT--TTAAGAGGAGGGGCACAGTGGGAGGCAGGCCAATGGAAGAG---ATTAATG-TAGCTCTTATGGGTCCCCGATTTTGTCCTCACAAG-AGTGAATTGTTAAAAA

a score=7858
s chr3            27952517 151 + 160039680 CAGTGCTGAGATACCGCTGCAACTTAGAACAAGTACTACTGTCAATAAACAAGAAAGGAAACCTGGAACTTTCTCTGTGAATGTCACCTTTCGTTGACTGAAGGCTCATAAGGATTTGATTCAGTCGCATCTATTTGTCCCGTGGGTGAGT
s HiC_scaffold_1 113447319 151 + 233722169 cattgctgtgaTACTATTACAGTTGGAAACAAGTACAGCTCTCAACAGATGAGAAAGAAAATCTGTTGCTTCCTATGTGAAAATCACCTTTCATTTTCAGGGAGCTTATGAGGACCTGATTCAGTTGCACCTATTTGTCCTGTGGGTCAGT

a score=3837
s chr3            28193405 110 + 160039680 AAGAGGGACTCTTCCAGT----------TGGGCACTG--CTTCAAGGTCA-CTTCCTTAGCGTGGAAGAAGAGATAATCAGGTGTGTGATTACACACTGACTTATGGGCTCTAACCTAAGGTT
s HiC_scaffold_1 129110790 119 + 233722169 AAGGGAAATACTCCCAGTGGGAGAACTATGGGTAATGTACTTGGTTGTCAGCTTTCTT----TGGAAGGAGAAATGACCAGATGTGTGATTACATACTGATTCATGGACTATGGCCAATGGTT

a score=4909
s chr3            28193454 158 + 160039680 TGGAAGAAGAGATAATCAGGTGTGTGATTACACACTGACTTATGGGCTCTAACCTAAGGT-----TGGA---------------------------TGGAAAACTGTTGACAAAGAAATGCAGGGGCGTTGACCATGG--------------ATGGTCAGAAGAAGTAGATAT-TTTGTT--CCAAGCAAATGTTCACTAAAATGTA
s HiC_scaffold_1 102067680 207 + 233722169 TGGAAGAAGAAATGGCCAGATGTGAGACTATATACTGATTCATGGGCTGTAGCCTGTGGTCTAGCTGGATGATCAGGAATTTGGAAGGAACATAAttggaaaattggtgacaaagataTTTGGGGAAGAGGTATGTGGATAGACCTCTCTATATAGGCAaaggatgtaaaaatatttgtttcccaaTTAAATGCTCACCAAAAGGTA

a score=4351
s chr3           28245451 75 + 160039680 TTTTTCCCCTCTAGCGCAGCCGACTCTGCAGGTCTGTGTGGAGCTGCGGTTGCGGGTCTCTGTTTCGCAGGATGG
s HiC_scaffold_1 99924325 75 + 233722169 TTTTCCCCCTGTAGCGCTGGTGGGCCTGCAGGTCTGTGAAGAGCCGCGGACGCGGGTCTCTAATACACAGGATGG

a score=4985
s chr3           28245524 71 + 160039680 GGGGTTCGTGAAAGTTGTCAAGAATAAGGCCTACTTTAAAAGATACCAAGTGAGATTTTGAAGGCGGTGAG
s HiC_scaffold_1 99925582 71 + 233722169 gggttttGTTAAAGTTGTCAAGAATAAGGCCTACTTTAAGAGATACCAAGTGAAGTTTAGAAGAAGACGAG

a score=9526
s chr3           28245593 120 + 160039680 AGAGGGTAAAACTGACTACTATGCTCGGGAACGATTGGTGATCCAGGACAAGAATAAGTACAACACACCCAAATATAGGATGATAGTTCATGTAACTAAGAGAGATGTCATCTGCCAGAT
s HiC_scaffold_1 99925997 120 + 233722169 agagGGCAAAACTGACTACTATGCTCGGAAACGCTTGGTGATCCAAGACAAAAATAAGTACAACACACCTAAATACAGGATGATAGTTCGTGTAACTAACAGAGATATCATTTGTCAGGT

a score=4731
s chr3           28245700 69 + 160039680 TCATCTGCC-AGATTGCATATGACCGTATAGAAGGGGATATGATCGTCTGTGCAGCATCTGCACATGAAC
s HiC_scaffold_1 99927585 70 + 233722169 TCTTTTGCCTAGATTGCTTATGCCCGTATTGAAGGGGATATGATAGTCTGTGCAGCATATgcacatgaac

a score=5022
s chr3            28717397 136 + 160039680 CATTTGTGTCTCATACAGGGCTAATTTCAGGACTGGTTCCAATGTACATTGGAGAGATCGCTCCAACCACACTCAGGGGTGCCCTGGGTACTCTTCACCAACTGGCCCTTGTCACAGGCATTCTTATTAGTCAGGT
s HiC_scaffold_1 132246257 135 + 233722169 CATTGGTGTCTTCTGT-GGACTCTGCACAGGTTTTGTGCCCATGTACATTGGAGAGGTGTCTCCCACTGCTTTTCGGGGTGCCTTCGGCACCCTCCACCAGCTAGCCATCGTCATCGGGATTCTGGTGGCTCAGAT

a score=4663
s chr3            28719330 180 + 160039680 CTAAGAGGAACTGAGGATGTCACCAAAGATATTAATGAGATGAAGAAAGAAA-----AGGAAGAGGCATCGACTGAGCAGAAGGTCTCCGTGATCCAGCTCTTCACGGATGCCAATTACCGACAGCCCATCCTCGTGGCGCTGATGCTGCACATGGCCCAGCAGTTCTCAGGAATCAATGGGGTA
s HiC_scaffold_1 132246564 180 + 233722169 CTGTGGGGCACCCTGGATGTGTCCCGGAGCATCCAGGAGATGAAAGAGGAGAGTGTTAGGATGAGCCAG-----GAAAAGAAAGTCACTGTGCTGGAGCTCTTTAGGTCCCGCAGCTACCAACAGCCCATTATCATCTCCATTGTGCTCCAGCTATCCCAGCAGCTCTCTGGGATCAATGCTGTA

a score=8738
s chr3            28726944 442 + 160039680 CTGCCTGTCTCACTT--AAGATTTTCTCTTTGT--CTTCAGGATAAATTCGCCTGGATGAGTTACGTGAGCATGACTGCCATCTTCCTCTTTGTCAGTTTCTTTGAGATTGGGCCAGGTCCAATCCCTTGGTTCATGGTTGCTGAATTTTTCAGCCAAGGACCCCGTCCTACGGCTCTGGCACTGGCTGCCTTCAGCAACTGGGTCTGCAATTTTGTCATCGCCCTCTGCTTCCAGTACATTGCGGTAAGTGCACACCATGTGCGCGCCCACGAGGGTAAGTGCTCACACAGTGCGGCCACGCGGCTGCTGACCCCTCTGTTTGCTCTCTTGCAGGACTTCCTTGGGC-CTTACGTGTTCTTCCTCTTCGCTGGGGTGGTCCTGGTCTTCACCCTGTTTACATTCTTTAAAGTTCCAGAAACCAAAGGAAAGTCTTTTGAGGAAATC
s HiC_scaffold_1 132246907 356 + 233722169 CTGTTTGTTCCATCTTCATGATGATCTCTCTGTTACTGAAGGACACATACGGTTTCATGAGCTACATCTGCATCATGGCTATCTTGATCTACGTGGCCTTCTTTGAGATTGGACCTGGGCCCATTCCCTGGTTTATTGTGGCTGAACTCTTCAGCCAGGGACCCCGCCCGGCTGCCATGGCCATAGCTGGGTGTTCTAACTGGACTTCCAACTTTTTGGTTGC---------------------------------------------------------------------------------ACTGCTCTTCCCCTTGGCTGT----------GGCCTCTTTAGGCGCCTACGTTTTTATCATCTTCACCATTTTCCTCATTATATTCTTACTGTTCACCTTCTTCAAAGTCCCTGAAACCCGAGGCAGGACTTTTGAGGACATC

a score=10669
s chr3            29926509 447 + 160039680 GTACCTCCTAG-CAGTCTGCTGTGCCAAGATGTAGCTGAATATTTGATGTCCT------------GATGTCGGAAACTCATTGAGGTG-GATGATGACTGCAAGCTACACACATTTTATGAGAAATGCATGGCCTCAGAAGCAGCAGCTGATGCTCTGGGTGAACAGTGCCAAGGGTTATA--TGGTTCAAATCAGTAGTGTGAATAAGGAACAAGGGTATCCCATGAACCAGGATGTCTG----GCTATATGGCAGAGTGTACCTGCTATTGATTGACTAAGGAGTATTCTTGTTACAAATCATAGAGAATTGGAGAGAGAAAGTGCTAGTCTACTCTGGGTGTG---TTTGAATACCAATCTAAGTGTTCTGAACTTGGGTATTATTTTTTGGAAAAAAGGAGA-GGACATCTCTATTTGGACACATAAGACAGTGTCTCAGTGGTTGGGGTCCAAAAGAGCTATCAGA
s HiC_scaffold_1 183145812 451 + 233722169 GCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAA------ATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATG-GAAGAGTTATATGTGATCCAAATCAGCAGGAGGAAT----GACAAGGTTTACTCACGAAGCGGGGATTCAGTTCTGAACCACGGCCATGTGTGCCTGCTACT--CTGAGTAAGGATTATTCCTGTTACAAACTAAGGAGAGCTG--CAGAGACAGCACACATCTGTTGTGGGT-TGCACCATGGGTGCCAATCTGGGCAATGTAAGCATTgttatcacacacacaaaaagagaaaacgGACATTCC----TGGACTAATACCACTCTGCCCTGATGTTTGGGGCTCAAAAGAGCTAGCAAA

a score=20057
s chr3           30561660 494 + 160039680 TATGCAACGGGCTCCAGTAGCTCCGGCT-CCTTCC---GGTTCCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTTCTGATTC-------TTTCTGTCACCTGTTTCAGGA-GCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTT-GCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAAAGTGGC
s HiC_scaffold_1 80725761 490 + 233722169 TAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGG------------AGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGT-ActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATAT--AGTAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCC-AAGAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTC-TGTCCCTTCATGTTCATCATTTTGGCAAATT-ATTGGAAGATGGC

a score=20540
s chr3           30561660 494 + 160039680 TATGCAACGGGCTCCAGTAGCTCCGGCTCCTTCCGGTTCCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGC------GCTCTTCTGATT-CTTTCTGTCACCTGTTTCAGGA-GCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACC-CTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAAAGTGGC
s HiC_scaffold_1 16174777 482 + 233722169 TAGGGAATGGGTACCAGCAACTCAGGCTCCTT-----TCCACTGGAAGTGTGCTTccctgggcag------------ggctggctggCACTTCAGTTGAACCCAGGT-aactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCT--GAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGT-TCCCTTCATGTTCATCATTTTGGCAAATT-ACTGGAAGATGAC

a score=20434
s chr3            30561665 487 + 160039680 AACGGGCTCCAGTAGCTCCGGCTCCTTCCGGTT---CCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTTCTGATTCT-------TTCTGTCACCTGTTTCAGGAG-CTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCG----GTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAAAGTG
s HiC_scaffold_1 178274478 488 + 233722169 AATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAG------------GGTAGACTGGTGCTTTAGTTGAACCCAGGA-GcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTT-TACCTTTGTGTTCATCATTTTGGCAAATT-ACTGGAAGATG

a score=12998
s chr3           30561680 441 + 160039680 CTCCGGCTCCTTCC----GGTTCCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTTCTGATTCTTTCTGTCACCTGTTTCAGGAGCTG-TCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCTGCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACG--CTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTG-TTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTG
s HiC_scaffold_1 32421050 396 + 233722169 CTCCAGCTCCTTCCCATTGGTTCTTC-CAAGATGTATTTCTCTGGGCTGCAG--------------Gctggcattt------------------ctttctttttgtcatcttttt---tctTGATGC-----ATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGATCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGG---ACATCTCTGGCATT--CTTATGGACAGTACCCACTCCC---TTGTCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCTCAg----gttttttccctttctcatttcTG

a score=9857
s chr3           30561838 279 + 160039680 CTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCTGCCCTTAA-CTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTT
s HiC_scaffold_1 99840708 273 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCA-------AACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTT

a score=5070
s chr3            30836419 162 + 160039680 TGTATTTGGGAGTAGAAGTGTGATACAGGAATACCTGGACCACAGTAAACTCTTAGCGTGCCCAAAGAGGTTGAAGCAAGGGCAAGGTTTT--AGGTAAAA-TGTGGAGGGTTGTATACTTTTACTTTGATTCAACAAACTCTGGTTA-TGATTGATAATGAGGAT
s HiC_scaffold_1 186212277 164 + 233722169 TATCTTTGGGAATAGCATTGCCATG--GGAATCCATGTGCCACGGTAAACTGTGGACATACTCAAAGAGGTTGAGGCAAGGGGAAGGTTTTAAAGGCAAAAGTGAGAAAGATTACAAAAAGACATTTTGGAACAATAATCTTGAGACAGTGGTTAATAACAAGGGT

a score=3690
s chr3            30876724 103 + 160039680 TTGATGATATCAGAGCCCCCCTACTGCAGTCAGTTCTCAAAATCCCACCAG-ACCTGGCATTCAAAACATGAGCTTTCAGGAGACATTTCAGAGTCAAACCGTA
s HiC_scaffold_1 122913708 103 + 233722169 TTGATGAAGTTAGATCCCTCATGATCCACTTAGTTTCCAAAAGCCCACCAGCACCAAGACTTTAGCTCAGGA-CTTCTGGGGGATATTTCAAATTCAAACCATA

a score=6172
s chr3           31018547 128 + 160039680 AGGGATATTATGATAACACACTTTGAGCCTTCCATCTCCTTTGAGGGACTTTGCAGTGAGGTTCGAGATATGTGTTCTTTTGACAATGAGCAGCCGTTCACCATGAAATGGATAGATGAGGAAGGTGA
s HiC_scaffold_1 64354867 122 + 233722169 AGAGATAGGATGACAACACTTTTTGAGATGTCCTTCTCCTTTGAGGG------CAATGAAGTTCAAGACCCATGGCTATTTGATAATAAGCAGCTTTTCACCACAAAATGTATAGATGAAGAAGGGGA

a score=4084
s chr3           31025127 92 + 160039680 AGGAGACCCATGTACAGTGTCTTCTCAGTTGGAGTTAGAAGAGGCTTTCAGGCTGTACGAGCTGAACAAGGATTCTGAACTCTTGATTCATG
s HiC_scaffold_1 64354983 91 + 233722169 AGGGGACCCATACACTGTATTGCCATTGTTGGAAGTAGAAGAAGGCTTTATGCTTTCTGAGCTTAACAAAGAATCTGAACT-TTAATTCATG

a score=5074
s chr3           31029485 81 + 160039680 AGTCCATTTACCGGAGAGGGGCACGCCGGTGGAGAAAGCTGTATTGTGCAAATGGCCACACTTTTCAAGCCAAACGTTTCA
s HiC_scaffold_1 64355207 81 + 233722169 AACCCATCTACTGCAGAGCTGCATGCCTCTAGAGAAAGCTTTATTATGCAAATGGGCACACTTTTCAAGCCAAAGGTTTCA

a score=7477
s chr3           31031071 154 + 160039680 TTTACTCTGCAG-CGCGCCCACTGTGCCATCTGCACAGACAGAATCTGGGGCCTCGGACGACAAGGATACAAGTGCATCAACTGCAAACTGCTGGTTCATAAGAAGTGCCACAAGCTGGTCACAATTGAGTGTGGGCGGCACTCTTTGCCACCGG
s HiC_scaffold_1 64355284 155 + 233722169 TTCATTCAGCAGTCGTGCTGATTGTACCATCTTCTCAGTCCATACAGGGTGGCTTGGATGCTAGATATACAAGTGTATCAACTGTAAACTTTTGGTTCATATGAAGTGCCACACACTTGTCACAATTGAATGCAAGCAGCATTTTTTGCCACCAG

a score=7415
s chr3           31037803 200 + 160039680 TAAAAGTTTTTAAAAGGTTGTTGCTGTAAATGCTCTCCACAGGCAATGAACACCAGGGAGAGTGGTA---AAGCGTCGTCCAGTCTAGGTCTGCA-------GGATTTCGATTTGCTTCGAGTTATAGGGAGGGGAAGTTACGCCAAAGTACTGTTGGTTCGGTTAAAGAAAACAGATCGCATTTATGCAATGAAAGTTGTGAAGAAAGA
s HiC_scaffold_1 64355518 202 + 233722169 TAAAGGTTTGGAAGAATTAGATGAAGGGAATG--------AGGCAGGGAACAACTGGGAAAAGTGTATGAAAGCTTTGTCCAGTTTTGATCTTCATCTTTAGGACCTTTGATTTGCTTTGAGTAATAGGGAGAGGAAGTTATGCAAAAGTACtattaactgaatttttaaaaagacattgcaTCTATGCAATGAAAGTTCTGAAAAAAAA

a score=5643
s chr3           31038449 97 + 160039680 GATATCGATTGGGTGCAGACAGAGAAGCATGTGTTTGAGCAGGCGTCCAATCACCCTTTTCTTGTCGGGCTGCATTCTTGCTTCCAGACAGAAAGCA
s HiC_scaffold_1 64355730 96 + 233722169 GACATTGACCAGATGTAGACAAAGAAGCATGTTTTGGAGCAAGTATC-AATTACTCTTTTCTTGTTGGATTGCAATCTTGCTCTTAGACAGAAAGCA

a score=5134
s chr3           31039025 92 + 160039680 CAGGTTGTTTTTTGTCATAGAATATGTAAATGGAGGGGACCTCATGTTTCATATGCAGCGACAGAGAAAACTTCCTGAAGAGCATGCCAGGT
s HiC_scaffold_1 64355824 92 + 233722169 CAATCTATTCCCTGTTCTAGCCCATGTAAGTGGAGGAGATCTAATGTGTTATATGCAGCAACAAGGAATACTTCCTGAAGACCATGCCaggt

a score=6525
s chr3           31041439 92 + 160039680 AGGAAGGATTGCGGCCTGGAGACACAACCAGCACTTTCTGCGGCACTCCCAATTACATTGCTCCAGAGATCTTAAGAGGAGAAGATTATGGT
s HiC_scaffold_1 64356042 92 + 233722169 AGGAAGGACTACAGCCAGGAGACAAGACCAGCACTTTCTGTGGCACTCCTAACTACCTTGCTCTAGAAATTCTAAGAGGAGAAGATTATTGT

a score=6944
s chr3           31043690 137 + 160039680 GCTTCAGCGTTGACTGGTGGGCTCTTGGAGTGCTTATGTTTGAGATGATGGCGGGAAGGTCTCCGTTTGATATCGTTGGGAGCTCTGACAATCCTGACCAAAACACAGAGGATTATCTATTCCAAGGTAATTTGCAA
s HiC_scaffold_1 64356132 134 + 233722169 GTTCCAGTGTGGACAGGTGGACCCTTGGAGTACT---GTTTGAGATGATGGTTGGCAAGTCTCCATTTCATCTTGTTGGGAGCCCTGATAACCCTGATTACAACACAAAAAACAATCTCTTGCAAgtcattttggaa

a score=7509
s chr3           31046970 117 + 160039680 GATGGAGCAAAAGCAGGTGGTTCCACCCTTTAAACCAAACATTTCTGGAGAATTTGGTTTGGATAATTTCGATTCTCAGTTTACTAATGAACCAGTCCAGCTCACTCCAGATGATGA
s HiC_scaffold_1 64356428 117 + 233722169 GACAGAGCAAAAGCAAGGGATACCTCCCTTTAAACCAAATATTCCCGAAGAATTCAGTTTGGACAACTTTGATTCTCAATTTACAAATGAATCTGTCCAGCTCACTTCAGATTACAA

a score=6097
s chr3           31238947 559 + 160039680 TTTATGTATAGGCACATATCACTGAGTGATGGGGACATGGTCTGTGAAATGTGTTATTAGGTAACT--TCCTTGCAGTGAGAGTGCTATGGTGTGCTTGTACAAACCTAGTTGGAATAGCTTGCTACATACCTAGGCTATAAACCTATATACGCCATGCAGATACACACACCTGAATAAACATGCATCACTCAGGTCACTACTCTGAGGGCCATGATGAATGAATGAAATGCAGGAGAAAACTCTAGCAGGAAGAGACACAATGAATCTTAGCTATATGCACTGCTGGTGCAGTGTGGTATGTTGCTTTACTGTGAACTTTTCCTTTTACAAGTACGAGTAAAGCTTAACATACTGATAAAAAGAATGCATCATGATCCAAAAGCCAGTATCGGAGGCATT----AC--TTATCAAGTATTACGTCCTGTACACAGCTGTATGCGTTATGCATTTATACTGCTGGCAGAGCAGTGG---GTCTGTATCTATATCACCACAGGCATGCTGAATGGTAGACATTGCAGGGTTGCAGCAGCTTCATGGT--CCAGTCAGTGGCAACTTTTCAGCT
s HiC_scaffold_1 18570848 467 + 233722169 TTTATGTATAGTCACATATCACTTAGCAACAGGGACACATTCTGAGAAAAGTGTCATTGGGTGATTTGTCATTGTGGGAACAACATCAGAGTATGCTTACATAGACTTCAATGG--------------CACATAAGCCAAAGACTCA-ACATGGCCTCTTGATGC---------AATCAAGA--------------------------------GATGCATGGATGAGGTGCGTGAG-------------------------------------------GCTGCTGGTGCCAGAAGGCACAGTGTCTTACAGCAAACCCTG--TATAACACATAAGAGAACATGCTAGAATAATTATAATAAGAGCATAGTAGAGTAAATACACGAGCATAGAAGTCATTTATCACTGTTATGGATTATTACATACTGTGCACAGCTGCATGTGCTACACTGTCATA-GGATGGCAGCACAGTGGCATTGCTGATGCAGCATAACCATAAACATA--GCACTGTTGATGCTCCAGTATCACA-TGGCTTCAAAGGCACTGGGCAATAGCAAATTTTTCACT

a score=6354
s chr3            31239162 400 + 160039680 GAATGAATGAAATGCAGGAGAAAACTCTAGCAGGAAGAGACACAATGAATCTTAGCTATATGCACTGCTGGTGCAGTGTGGTATGTTGCTTTACTGTGAACTTTTCCTTTTACAAGTACGAGT----------------AAAGCTTAA------CATACTGATAAAAAGAATGCAT-CATGA-TCCAAAAGCCAGTATCGGAGGCAT--------------TACTTATCAAGTATTACGTCCTGTACACAGCTGTATGCGTTATGCATTTATACTGCTGGCAGAGCAGTGGGTCTGTATCTA----TATCACCACAGGCATGCTGAATGGTA-----------GACATTGC-AGGGTTGCAGCAGCTTCATGGTCCAGTCAGTGGCAACTTTTCAGCTCCGTGAAGGTCTTATGGGACTAAAATCA-----------TGTAGGTGACTAAAATGCTGTTATGTGG
s HiC_scaffold_1 183370590 439 + 233722169 GATTAAATGAAGCACAAGAGAAAATAATGTGATCAAGAGATGTGGTAAACATGAGAGGCATA-----------------GGCATACTGTTTTACTATAAACCTC-CTTATTATGTAGAGGAGCCATAGTCTAAcaataaaaagtataataaatacacACTAGTACATGGTATGTATACATAAGTACACGAACCAGTACTATAAATACATAAAGCAGTAACACATTTGTCAAGTACTATGTACTGTACATAATTGTGTGTGCTATACTTTCATATGACTGGTAGCATGGTAGGTTTGTTTATACCAGCATCATGACAAATATG-TGAATAATGTGTTGCATTATGGCATTATGATGGCTACAACAGC-------ACTAGGCGACAAGAATTTTTCAGCTCTGTTATCATCTTACAGGACTGCCATTGCATCTGCAGTCTGTCATTGGCTGAAATGCTGTTGTGTGG

a score=7508
s chr3           31337412 242 + 160039680 AGAACCAGCTTCAAGGTACTTTGAAGCCAAAGAAAGGTAGGCAGACATATCCAAGAGTGCATAAAATGTGATTTACTGGAGGATTTGCTGATAGAATTGTAGCCCCAGGCAGCAATAAGACTGAGTGGATCCTGGCAATGTGTGTCATAAGAAGGGACATATATATTGGCCTAGACAAAATTGATTCCATCCAAGTTTTAATATATCTGGTTTACTTTAAGCTAATATCAGAGTTGGGCACA
s HiC_scaffold_1 23032609 239 + 233722169 aaaacagGCCCCAAGTTATTGTTACACCAAAGAAAGAT--GCATACAGATTCAGGACTGCATGGACTGCCGCTTACTGGGGAACTTATTGAAAGAAGCATGATCTTGAATAGCAAGAAGATCAAGTCAATTCTACAAATTTGGGTCAGGAGGAGGGGTGAGTATTTTGGTGAAGACAAAG-GGACTTCATCTAAGATTGTATATACCTGGCTTCTCTCAAGCAGGTCGAAGAGTCAGACCCA

a score=59997
s chr3           31773703 3565 + 160039680 ctcatgatgatggtagaggacataaagaaggaatttaataac-------tcatttaaggaaatacaggagaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttatagaaaaacagg------aaaacacattga--aacaggtgatagaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGT--GAGGCAACGCTGGAGATAGAAACCCTAGGAAA---GAAAT----CTGGAACCATAGATGCCAGCATCAGCAA---------CAGAATAC---AAGAGATGCAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGA--TGAGAATGAAGATTTTCAACTCAAAGGAC-CAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCC-CATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGA-TGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCA--CGAATCCAGCCC------TTCAAAGGATAATAACAGAAAAAAACCAAT--ACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAA---------------CAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA-------ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGA-----CACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGAT---ACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATA-----ATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC---CACTATTATTCTGATAC----------------CTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTC----AGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG----ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC-----ATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAA-AGATAGGAATTCAAGGCCCAT-ACCTAAACATGATAAAAG-CAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaa-agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggag
s HiC_scaffold_1 65294934 3486 + 233722169 CTAAAGAGGATGAATGTGGTATTGAAGAGGAAATCAAAGCACAGTAGAATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaA--------TAACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACCAAATAAAATCC--AGGAGatcaaaaattacactgaaagcaTAGGCAGGAGAAATGACAAATGTGAGCACAGAGTACTGAAATAGAAGATGGAGCTGATGTT-GGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatgga----gccaacagctgctagat------------gaaaTGCGG-----------AAGACTAAATTAAC---TGGAAGGAGTAAAAATCAGAACGAAG--------TACAAATGGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAGgtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACCCAAAAAATTCTCAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaa---------aaaaaaaaaaaaaaaaaaacctataaaaataaatacaccaaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTGA------------GACCCAGCAGTATGCTGTATATCAGAAAGTCATTT--------AATCCAAAAAACATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGA-------TTACCACAtattaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGA-CTTAGAAGATCTGATATAT-----ACAATTATATTGAAGAACTTCAATACCACACTGACACAAA----CATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGA---ACATTCT--AACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaagg--taagacCTAAATCTTAGAAATTAGGAATT--------------GTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAATAAGATATAAAGACCCTGGAATAATACAGTCACAGCCAATGAATTAAA-----CCATAAATAAGAACATCTATGAACAAATATAAACCCA-GACTA----CGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAGCAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGt---cacacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAATACAGAAGGATTCCTTTTAcaaaagggaagggg

a score=80052
s chr3           31773742 4666 + 160039680 [encoded data, 4923 characters]
s HiC_scaffold_1 71797293 4599 + 233722169 [encoded data, 4923 characters]

a score=22394
s chr3           31773791 2825 + 160039680 ttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttatagaaaaacaggaaaacacattgaaacaggtgatagaaatgaacaaaacca------tactagacctaAA--AAGGGAAGTA------GACACAATAAAGAAAACCCAAAGTGAGGCA---ACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGA--TGCCAGCATCAGCAACAGAATACAAGAGATGCAAGAGAGAATCTCA----GGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAA------CCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCC-AAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT--AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAG-ATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA-----ATAACAGAAAAA-AACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACA--GAATGCCAACTTTAACAACAAAAA-TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAA-ACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGA----CACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACA-----AATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAA--AGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATA-CTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGAC------CAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCG--------------------------------------------------------------------------------------------AATCCAAG-----------------------------------------------------------------------------------------------AACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAG--ATAGGAATTCAAGGCCCA
s HiC_scaffold_1 89593870 2780 + 233722169 ttagaaaaaaataacagaatatccCCAAAAATGTATAACACTTCA-----AAACTTGATTCCATATATAATTAAttcctaaaatt--ataaaatcaattaaGTTTTATAGCTAGATTAAGGAAGACATTGCAGGATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtaga-caaaataaat-caaaagaaaagataaacggGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCAtggaaaaag-------------------aactaaaaat-----gaaagattaaga-ataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACT-AAAGCATAAGCATCTATCCAT--TGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCT-----CATTTAA-AGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAACATCGTAAAAAT---AGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgtt---------gaGCAAAGAAACTCATGA-----CAAGTAAGCCAGCattccagaaaatatttaaatatcacaaaGACAATGAGTATAAG-------ACCATGT-------AAAGTATAAatttaatt-----ggaaaaataaa----gacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAA-TCTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAA---GATCTG--GAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaacaaaaatcttt---aagtGACAAAGAATGCCACTACACATT-GTAAAAGGTACAACTCACcaaggaaaa---acaattttaacCATAGGAAC-ACAAATGCCTGCACATGttatttcataaaacaatttCACTTGAAAAGA----CAAACACAT--------CCCCAAAAATATAGTAGGGGACTTCAACAC--TATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT----------------------------TTTAAA---------------------GTTCTATTGCATCACAatggaatgaaactagaaattattaggaaaaaaattacatgaa----------tatGCTGAAATTGAG---------TTAAAATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAA----AAGCAAGAGTGGTTCCCAAAAAATAACCTAATGGTa---ctaaag-----agaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat-taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=36562
s chr3            31774040 3104 + 160039680 ATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAA----ACCTAC-GGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTG------AAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAA--GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACT--AAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAAC-----AAATACACACATTATCTCTCCACGAATCCAGCCCTTCA---------AAGGATAAT---AACAGAAAAAAACCAATA----CAAGGACTGGAACCACGC-CCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCT---CAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGAT---GGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTC-ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAAC-----------AAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGG-TCACAAA-ACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA---AAAAGGAAGCAAATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCA-TTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcaggga-------------------------ctaga--------------------------------------------caaggct-------------------------------------------------------------------------------------------------------------------gcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaaga----------tctcagaagatggaaagat
s HiC_scaffold_1 171883800 2888 + 233722169 ATTACACAGAGA-CACCTTAGAAACAACaatagaacatgaaaaatg------------gattcaACAGCCCCTGGA------TGATGTAA--AGAAGACTAACAGGAGTTACTGAAAAATAGGAAGCTACCACAAgtggcatttttaa--------------aaacctgttta-ctgaataatagccaaaaaaaaaaactttccaaatatggaGAAAGAG--TCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAA-GTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc-----aaactagcactccaaaatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCAAATGGTCCAACCAAATGACTACAGCATAC---AGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtga---gaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagag---aaaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatca-gataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcag--aaaCATGAAATTTTCCCC-AAATAGAAAACATACTCATCTCATAAAGGCATACTTAAGTATTCATAAGGA-gtcaaaattattccatgcatac-aTCAGGTCATAGT-GCATAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACACAAGAACTT-TGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaa--acagtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTac---------caaaaacaa----------taaacaaacaagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGTTCT----CAGATAACAGAAATTA----------------------------------------------------------------------------------TCAAAAATGAAccaaggccaga--gatttagctcagcagcccagcagg--------------------------------------------------------------------------------tgtgaagtcatga-----------------------------------------------------------------------------------------------------gttcacaGAGCGCagtaaatcattaaaaagatcatacatcaaaACCAACAAGGGTTTCTCC--------CAGGGATGATTCAACAgac--aaattaataaatgcaatGTGTCACATAGACAGAAGCAAA--------------AATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAAATGCAACA---ATTCATGGTAAAagtctgaagaaaataggtatagaatgATCTTTTCTGAAGCTGGTAAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgg-gaaaaactgaaagctttccctctaaagcCAGGAACACagccaagcgtggtggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataaaataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaaggg-tacgtacaagaaaa-aagaaataaaattatcattattttcagataacaTGAGCGTCTACAT-AGAAAACCAAAAAATTCCAC---------TCCAAAATTAATATCCA---------AAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaa--------caggaaCTAATCTAAGACAGTGAAAGTCCTTTACAATGAAAACTCC---TATGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=18431
s chr3           31774069 1192 + 160039680 AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAG-TGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-------GAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGA--TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAA-ACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATA----------------ACAGAAA----AAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCA-ACTTTAACAACAAA-----------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGA------------------------------ACTCACAATT-CTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA--CAGAAGTTATGAAA
s HiC_scaffold_1 67576299 1192 + 233722169 AGACAAAATAGTGAATAacaataaag---aactcaaagaagctaagaagaaaaatagacaataaGAA----AAGACTAtg--caacagctgctagatgatagCACAGAT------------GAATTCACTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagttt------aaaatacaagtaactgaca---tttataaaacattgaaCAATTATGATAAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTTGGATGATATATGAGTGCTAAATCAGCTCT---Aaggaaaatacttaagaatattctcaacagaaacaataagtcagacacag---ctaaaatcaca---gaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccgg--aaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACATATG--GACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaaaagggtacaagttatgcagaatttcagaaa

a score=83315
s chr3           31774081 4377 + 160039680 [encoded data, 4547 characters]
s HiC_scaffold_1 91695044 4298 + 233722169 [encoded data, 4547 characters]

a score=4378
s chr3            31774103 106 + 160039680 AAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAA
s HiC_scaffold_1 139027905 106 + 233722169 AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAA

a score=49310
s chr3           31774119 4389 + 160039680 [encoded data, 4730 characters]
s HiC_scaffold_1 70532410 4299 + 233722169 [encoded data, 4730 characters]

a score=7013
s chr3            31774126 753 + 160039680 ACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATC---TTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAG-AACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAA---------CAGAAAAAAAC-------CAATACAAGGAC------TGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAA---------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCT
s HiC_scaffold_1 229213867 727 + 233722169 ACAGAAACAAGACCAATCTAACATTAACTGGGaat-------aataaaa-----caacacaaagcat----AAACATCCTGTTTACACacataataacagaaaattttatgAGTATGGGGAAAGAATTTATCGTACAGATGAGTGAGGGCAAAAA----CCAAATATTTATAGTCAGAAAAAAGGTTTATCTTCAGCACATTCTTGGCAAAATCCTAGGAGT-CCAACAAAGGACAGGATCTTAAAAG-ATTTAGGGAATAGTAACAGCTCATTTATAAAGATAAACCTATTAGAATTACAGCACATTTCCAAAGAGAAACCATAATGGCCAGAAGGGCTTGCAGAGAAGTGTTTTAAaccctaagagaaaaaaaaattacaaatcacATTGATATTCTCTGCAAAGatatcttt------------------caaatt------tgatgaCAACAAACACATTAGACAATTTAggaccaaaccagcactccaaaacaTTCTGAAGGGTGTCTTAGAGAAGGACAGGCTTGCAATGCCAAAACGTTTAGTGAAAT---------GAATGTGTCAGATAGGGGTCAGTTAAGGTGACTGCATGA----AGCAGAAGGAGCCGAA---CAGACTCAGCACCAGGTACCAGTGCAGTGACAGGGCTCAGTCAACACATTGCAGGACTAAGTCTCAAAATGAATGGTCCCAACTCCCCACTCACAAGACACGGATCAGTATACTCAACCAAAACCCAAAACTTAACAATGTGTTGAATGCAAGAACTACATTT

a score=78157
s chr3            31774147 3948 + 160039680 [encoded data, 4324 characters]
s HiC_scaffold_1 135385600 4017 + 233722169 [encoded data, 4324 characters]

a score=8588
s chr3           31774181 401 + 160039680 AACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGA-------------AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATAC
s HiC_scaffold_1 87509165 384 + 233722169 aaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC-----------TCCTGCAAAA---TTAACTTTCAAAACTGGCTGAA--AAGACTTTTCATGgcaaaaa-aaatac

a score=30131
s chr3            31774182 2467 + 160039680 ACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAAC------AAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGGACTGGAAC-------------CACGCCCTAGAAAAA-----ACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTA-----------------------------------------------------------------------------------------------------TCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACA--CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG----CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGG-ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTA-----AAGAAATAGA----AGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAG---ACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT--CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA
s HiC_scaffold_1 116834065 2369 + 233722169 ATTCAAAGG-TCATAAAACATATTCAC-----TTAT--AAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaaga-aaaatacaaaaagttgtTACATAAAAAGAGCAG------CAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAGAAGAAATATATGACCACTAAAC--ATACAAT------AGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaattaaacaaaaggaaaaaaaacaaaagaattggc-----ATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAATACT-GAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagatta----atAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGAACAA--CAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCACAG---------------------AACAAAAACT-------------------GCTGTACATATAAGG---------------AAAAACATATCAATA----------------------------CAATTACAGTGAGAAA-TTCAATAACCTACTCTCAAAACTAG-CAggtcaacaagacaaaaaattagcaaaactTATCAGTTAAAC-----AATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag----------atataaaaactctGA-ATAGTCTAGTAACAGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgat-----ttttaaaaa----------------ccctg-cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=25718
s chr3            31774186 1662 + 160039680 AAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAA--GCCTACAGAACTCCAAATAGACTGG--ACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGA----TAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACG---TTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAA---GTTATGAA--ACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATA---TAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAG---AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291805 1557 + 233722169 AATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgc-AAATAAATG-------ATATACAGGGACtggatttaaaatgcaaaataagcaTATAGCCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTACTGCTAAATCAGTTTTGCAAAACTTACTGA--------------------GTTTTGCAAAACTTACTCAGGAGAGCATGAAAAGGAGTAAATCTT-------ATTAAAAGA-----GTCAATAAATCAGAAT-CAAAC---AATCAATGAAATAACAGGGAGCAATACATACCATTCC-----------------AACTGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTCACAAACAGGC-TAtc-------taaaaaatcagcaaagaaacaattgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGT---AAAACAGGtcttaataaatacaaaaa--at-aaataatgtcttGTATCTTATCAGATTACAACGGT-----------------TAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=53089
s chr3            31774197 2811 + 160039680 AAACATCTTTAACAAAATTA-------TTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-----------------GAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAA--------GGATAATAACAGAAAAAAACCAATACAAGGACTGGAACCAC----GCCCTAGAAAAAACAAGAAGATAATCCCTCAA-CAAAACTAAAAGAAGACAGCCACAAG---AACAGAATGCCAACTTTAACAACAAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCT--CAGGGAAAAAGAC--AAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCA------AGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATG-CAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCATCAA-TGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAA---CTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACG-GGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGC--------TAGACTCACTAGAGGGCACAGGGACAAAATCCTA-ATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA----TCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaa-aatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 128206417 2911 + 233722169 AAACCTTGTTAACAGGTTTACTTTTGTTTacaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtc-aactccaattagccatgattaaaacaaagaaacaagaagagaaaaaacaccTTACACTGAGGCATATAATTGTCAggattccaaaaattcaacataggaaaataacattaaaaagtattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGGAAAggttgcagtgaagtatttcaagccctgaaagaacaTACCCCCCAGCACAGGTTGATATAATCTGtgaaactttccttcaaaattggtggagaaacaagatacttccatgacaaagaacacctggttgaaattcatgaccaccaagccaacactCCAAAAACATTCTGAAGACTAATATACAAAGA---GAACAAAGACTCCAATTTCATGAGCCCCAAGAGA--------TTTAATCCATcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGAGAAATTAGATGACAGAAATAAGTTAACACACATCCTTCATAATCACCACTGTTAGtggactcaattcaccaatcaaaagaaacagattggcagaatggctCAGGAAACAAGATCCAGggttggagatacagctcagtggcacagcgcctactTAGCAAGATCAAGCTCATTAGTTCcttgcccagtaccaaaaacaaaagaaaagagaaacaagatccaacaatatgcggCATACAAGAAATATGTTTAACATGGAAAGATACTTATACATTAAC----AGTCAAAGTgtggaaaacaatgctccatgggACAGcaa----cctg--gaaaaaagcagggccagctattctatttgcagtcCAACTGga-ttcaagccaaaactgatcaagcCA--CAAAGCAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataacaatcataaatatgtatgcccCCCAGGACCAGAGCAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTACTGCCACAAAATGGGCAGATC-----------AACTAGACGACAAATCAGAAAAAGAACTGAGTCAAACTTTTGAACACATGGACTTAGTAGTTGTCTACAGAGTTTTCCGCCCCACCActtcataatacacattcttctccaaTCCTcaagttttgttttccaaaataacCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaagaaactgaaatcattCCATGCATATTAGCAGACCCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAATGTCC-TAcgaatatggaaattaaataacatccttgtgaacaaccagtggatcacagataaaattaaagaacaaattagcaAGTTTCTACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcc-catataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccatacagagaatgaatgaattaaagagGTAGTTCTT--GGAAGATGAAGTAAAACAGACAACCTCTTAGCAAacattgtaaaattttaaaaaggaa-----acaaagtcttagattcatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATCCCTATGTC-ATATGAATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAATGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgactAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGAACTACCTAATGCTGCCACTCCTCAAACTCTAGTGAAGTCGAAAGGTAATCAGTACTC--CCTaagtcatccctggaagcaagcattac-ctgtTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAATCTACCTAATGAGCATAGACAGAAGAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACCAGgtaggattcatcctagggatgcagggaGAGCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAACCAAGGATAAAAACCACTCAATCATCTCATTAAGCACAGAAAAATCATCAGTTAAATGCCAACACCCCTTCAAGAGAAAAACTGTACAGAATATCCAACTATATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatccaTTTTAGTAGCATAGCTGGGTACGAAATCAACACACAAATATCAACAGCATGCCTATACAAATGtaacaaactcagtgagagagaaattaaggaaac

a score=9497
s chr3            31774204 765 + 160039680 TTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAA--TAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGT-TATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAAT-------------AACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAG------------AAGATAATCCCTCAACAAAACTAAAAGAAGA--CAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGGTCTGAAGAAACAAGATGGAGTAGCCAT
s HiC_scaffold_1 129057707 738 + 233722169 TTTACAGAAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCAT----AGAA----AAAAACCCTGAAGTCCAACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaataaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaa------gaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTT---TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta----aaatt--aAGACtcaaaaacagtattccatgcaacatgaACCTAA-AAATAAGTAGGAGTTGAcat

a score=4637
s chr3           31774204 131 + 160039680 TTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAAC
s HiC_scaffold_1 59227083 131 + 233722169 TTCAATAAAGTAATAACAGGAAACTTCCCGAATATTGAGAAAGATGTGGACATCTTTGTATAGGAGGTTTACAGAATCCCAAGCAGACAAGATCAGGAAAGCGCTTCACCACAGCATATTCTAGACAAAAC

a score=49912
s chr3           31774205 4025 + 160039680 [encoded data, 4461 characters]
s HiC_scaffold_1 55842561 4139 + 233722169 [encoded data, 4461 characters]

a score=106672
s chr3            31774223 4290 + 160039680 [encoded data, 4830 characters]
s HiC_scaffold_1 195237049 4667 + 233722169 [encoded data, 4830 characters]

a score=28102
s chr3            31774228 1970 + 160039680 TTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACAAATACACACATTATCTCT--CCACGAATCCAGCCCTTCAAAGGATA------ATAACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAG--AAAAAACAAGAAGATAATCCCTCA-------ACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG--TCTGAA-GAAACAAGATGGAGTAGCCATTTTAATATCG----------------------GATAAAA--------------------------------------TCGACTTCC-----------------------AACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCAC-ACAATAATAGTGGGAGACTTCAACACAC-CACTTTCATCAATGGACAGATCG--TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAA----------------------------------------------------------------------------------------------CAGATACAAAAATAATGAAA---------TTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA-AGAAGAAACGG----------GAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-----------CAAATTCACCCAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAAT---AGAAGTACTTATTAAT-AATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881341 2293 + 233722169 ttcccaagtcaaaaaaaaaaaaaaaaaggaaaga---aagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-GCCATATTGTTCTCTAAGTACCAGGAATTCATCACAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTCCTt---cagaaatgaataaagaaagtatttccatgacaaggaacacatctaaaaaaaattcatgaccatcataacagcatttaaaaaattctcaagtgTAAcctagaaaga--aataatgaagccAGCAATACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaaggaaaaggaaaaaataaggagATCAGCAGAAGGACTGTAATGG----gatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA----AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggt----atagacatgaaaaaatcagataaacaccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAGACTCAAAAcc------atacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=64036
s chr3            31774239 3369 + 160039680 AAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAA-TTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAG-------------------------GATAATAACAGAAAAAAACCAATA----CAAGGACTG--------GAACCACGC-----CCTAGAAAAAACAAGAAGATAA--------TCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACA---------GAATGCCAACTTTAACAACAAA--------------------AATAACAGGAAGCAACAAT-------------------------------------------------TACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTC---CAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAAT-------------------------TCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAA----------------CAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGA------ATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAA-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTT-AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAA-CTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaa---------------gtattagccagagcaattcga----------caacaaaagg---------------------agatcaaggg---------------------------------------------------gatacaaattggaaaa------------------gaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaata-----------------------------------------------------------------------------------------------------------------------------------aactcaaacaagt--------------------caatg--------------------------------------------------------gcctttctctataca------------aagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttgg-cgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgca--------aattcatctggaataacaaaaaacctaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtac-----------------------------------tggtat-------------agagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaa---------gacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttg
s HiC_scaffold_1 133193494 3824 + 233722169 AAAGAAAAAGGGGTTGTCACACAGATAATTGGCC-ATATAGCTCCAgttagccatgat---aaaaaaattacagcaaaaCATGTAAAAGTCATGATTCCAGAAACTCAAAATAAGATCAtaat--taaaagttgttagagaaaagaaacaaatcacctacaaaggaaagcccatcagaatcacagctaacTTCTCACAAG---CCCTCAAATTAAGGa---cttgaagtaaaatatttaaagccctaaaggaaaacaacctttcaacccagattgatgtaacctataaaactatctttcaaaattgatggagaaataagatacttctatgaaaaGAATATCTGAGTAAATT-TTtggccaccaaaccagcactctaaaATGTTCTCACGCatgttctagaaagagataacaaagaatTACAACTCATAAGGCCaaggctttagctcagtggcccaagcacctacctggcaagtgcaaggtcatgagtttgatctctgctaccaaaaaaaagaaaaaaaaaaaaaaagaatacaactcCTTGAATcccaa----gacaatgaatgcaattggcaaggcaaacaaataaaaggaagaaaaaataagagagctaacaacagaaaaatatcatGACAATGACtgaataagtcaatacatatcagttataaccactaatgttaatgatctcaattcatcaatcaaaagaaaca--ttggcagaatggatcaagaagcaagatgcaacAATGTGCTGCATAAAGGAAACacattttacttaaaaa-agaaatgcatagacAGAATCAAAGAGTGGGAAACAATAGTCCATGccacaagaacccagaaaaaagcagaagtagctattctatttgcagacaaagtggatttcatcCAAGTCAGAGT----AAGAGAGACAAAGGG---CACTACATCCTTATGAAAGa-------atctaagaggaagagataacatatatatatatatatatatatatatatatatatatatacagcaaATACTAATGCATCCAACtacatataaaaaatattaatggacacgaaaaatcaaataaacactaatacaattatattggGGTACTTC--CATACCTCCTGCCACAA---GTAGATCATCTAGACAAAAAGTTAACAATGTAATATTAGAACAGAACctaacttttgaacaaatggacttggtagatacctacagagtgttccaccctacaacatcagaatacacattcttctcagctacacacgGGATGTTCTGCAAAACTGTCCACATACTATCTCATAGAACATaactaagtaaatgaaaaggaattgaaatt-ccccatgcatattatcagaccatagtgcaacaaaattggaaattgatagtaaaagaaaccaaaagaactTCATAAACTGATGGAAATTAAAAGTggcatattaaaaataatatccttctgaacaaccagtgggtcacagatgaaattaaagacaacattag----TTTCTACAagtaaatgataatgccagtgcAACATATCAGGACTTATGGGAcagaatgaaagcagtccta-gagTGAAATTTTTAGCGGTGAGCACTCATGTCACAAAAAATGAGCAagctcaaacaaaacaaaacactttaatGTTGCACCTTGAGCttctagaaagaaaagaa-caagtcaagccca---------acaaaagaaaattataaagatcagagcaaaaattaatgcaactgagactaagaaaacaatacaaagaatcaatgaatcaaagagtt----ctttgaaagattaaataaaattgataaaacccttagctaaccttatcaaaaaacgAAAGATGCAAATcc----------atttaggaatgaaaaagacGAAATCACATCAGATCCTGCAGGAATCCAGAAGACCATCTATCCTTACTTCaagaacctgtactctaataagatgtaaaatgcagaagaaatggatagattcctagatatatatgagttg----agctaaatcaagaagatataaaatttctaaataaaccaatatcagtcaatgaaattgaagatgtaattaaaaaaccTATCAAAAAATCAAAGCCCAGGCTCTGATAgatttcactgctgaattcta-caaaaatttgGAGAGGACCTAATACcacttct---taaactctttaatgaaactgaaagggaag-cactattcccaaattcattcctggaagcaagaattaccctgataccaaaagcagacaaagacccaactgagaaaaaaatcctaCAGGCCAatt--------gaacataaatgcaaaattcctcaataataT-ATTGCAAACAGAATGTaacaattcatcaagaagattatttaTCATGACCAAATAGGACTCATCCCAGGGGtgca--------------tatacaaatcaataaatgtaatacaccatattaacagagccaaggacaaaaatcatatgataatCTCAATCAATGCAGAAAAAGTGTTTGACAACGTCTGACACCCATTCATGGTAAAacccctacagaaaatcagaatacatggtctttatctgaAACTGAT-AAAGCCATCTACTATACATCAACAGCCAACATcctaataaatggacaaaaactgaaagctttcactctaaaatca-ggacaagataaggatgtccactg--tcacttcTCATTCCGTAAGGTTCTGGAAACAGTGTGAGCAACTATATaagagagaagaataaaagaaataaatgtaaaaaaaggaagaagtggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccgataaaaattaaaaaaaaataaaaataaaaaaaggaagaagttaaattatcatgatttgTAGATGATATGATGCTCTACACAGAAGCAACTAAAAATTATACCAAAAGACTTCCAGATTTCATAATCAAGTTCAGCAGTGttactggatacaaagtcaacattcaaaaatcacttacatttaagtgtgtaagatagataatcatactactaagtttttgttggatcatgagCAGAATGGTTTTGCACTATCATTGTTTGACtgcccactttttatgctttgattttgtaacttgaacaactatttctaagatgacaatatgcaatgtatcaactagtgatttcttagtgttattattttttttgatattctgtattatttctacccttttctgtaTAGCCTTCAGGTACAagaat-aacaaactcacagagagagtaAGTATGAAA---CTTTCACAATTATATCaagaagaatgaaatacttaggaaatcaatctaatgaaggacgAAAAGGGCCCCTATGTGGAAAACTATAGCCCTCTGAAAAAGaggattgaagaggatattagaaaatagaaaggtatcccttgctcttgggtaggaagaaccaatatagtgagaATGGCCATAATTCCAACATTGGTATACAGGTTTAATGCTATCCTGGACAAAATTCCAACAgtatatcttacagaattagagagaG-AATTTTCAGAATTATCAGTTCATTTGGatccaaaagagacctagaatagcaaaggcaattctgagcaacagaGATAAAA------CAGGGAGCATCACAAgccctcacttgaaattatactaaaaaccTAGTATGTTAAAAATAGCatagtaccacaaaataaaacaaaacataacaaaccaaacaaacaatattaaaaaaaaaaaaaaaaacagatctgaggaccAGTGGTATAGATTAGAAGCTGCAGAAGCAACTCCAAAC---------------ATACTTACCAAGGAAGGTATAAACACCT--TTGACAAAGGTGTTTATTGAAAGCCTATTcaataa--aatgctgaaaaaactggatttctacatgctgaagatttaAAATTAGACC-TACATCTCTTGTTG

a score=20892
s chr3            31774276 1192 + 160039680 AGAACTCCAAATAGAC----TGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT-AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAAC---AAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT-----------------AATAACAGAAAAAAACCAATACAAGGAC----------TGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA-ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA-CAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACA---AAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAAT
s HiC_scaffold_1 233647532 1134 + 233722169 aaaatcccaagtaaACAAAATGTACCATAAGGGATAT-------AAAATTCAAGATTGAGGAAATTCAGCACAATACACCA--------TACTACAAGctgttaagagaaaaa---caaatcaacgATAAAGG-AagaccatcagaatcacagaagacttttcaATACAAACCCTTAGGTGAAGGAGAGCtgggaatgaagtatttcaggtcccaAAAGAcaacaaccttcaacccagattgctATGTCCTGCAAAGCTATATTTCAAagttgatgaagaaataagatacttccatgacaaagaactgaaaaaaattcatgatc-----acTAAACCAGCTctacaaaatattctgaaaactattttataaagAGACAAGAGtacaattccaagaacaccaATGATATGAAACCAC----CAGGAAAGGCaa------------tcaattaaacagaaggga----------atgatagagaaccaac---aacaggaaaatacaaCAAGGATAAATCAGTACATATcatttataactatcaatgtaaatggcctcaatttaccattcaaaagaaacagagtgacagaatggatcaacaaa-aaGATCCAACATTATGGtgc--ataagaaacacatttaaactgAAAAAGCAATCAAGAGA-CAAATTTAAAGGAtgaaaagcaatacttcatgcaa--------------caagac-------cTATTTTATTTGTAGACACAGTGAACtgcaagccaagactgatcataagagataaagaaggtcactatgtacttggtaa-gaaaaaaaactgcaagaagaa---aagatcataaatacGTACGTACCAAATGCCAGTGCAcccaaatatattaaa-acatattaaCAGA--------CATGCATAA----TCATATTGTAATAG---GGGATCTCACTACCCCACAGACAAAAATAGGCACATTAACTAGACAAGCAATCAACAAAGAAGTATCAGAACTGAGCCAAACCTGTTGAACAAATGGATTCAGTAGATATGTACAAAGTGCTCCACCCTACAACATCAGCATACAAGTTCTTCTCAGCTATTCATGAGAAGTTATCTAAAACAGAATGCAtattaacccacagaacatacttaaataaatatatgcaatggactgaaattattccatgcacaGTATCAGACCATAAGGTCCAAATCCCCatacctattcatgataaaaat

a score=32266
s chr3           31774347 2414 + 160039680 AAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAAT-ACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAAC---TAAAAGAAGAC--------AGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCT--------------------------ACACAAACAGGACACA-------------------------------ACATTC----------------------------------------------TGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGG-ACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATT----GGTCACAAAACAGGCCTCAACAGATACAAAAATAA-TGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGAC-----ACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA--AGAAGAAA----CGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA--GCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAGAGGGCACAG----------------------------------------------------------------------------GGACAAAATCCTAATTTA-CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGA--TCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAA---AAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGG--------TTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA----GCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaag
s HiC_scaffold_1 77435168 2493 + 233722169 aaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaattaatgaaaaataaagacc-tCCCTTGATAAGTGTAAATTATAGACATT-TATGACCCCTAATCCAGCATTGCAGAAAATACTTAAGTTAATcttaaacacagataaaaaagagaataacaattatgagaccaaagaaagaaatgtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCA-AATagtagaa----------aaaaaacaaaatgataggaattagTACATACCTTCCACAACTATCA--TAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACAA-CACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG-ACAG----------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAAT-----ATACACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaaagaaaa------------------cacatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataata------taatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaaaaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAG----------TCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaaatattttaa------aaagaagcataaataat---aagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTG---TTAATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=85363
s chr3            31774348 3573 + 160039680 AATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAA------AAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGT-------CTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTG----------GGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAA--------CAGGGACACAGTGAAACT-AACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGG-----ATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-------CATCTAAAAGCTCTAGAAAAAAAGG-------AAGC---AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGT---TTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatata-agtgaccctaaaaattctaccagagaactcctaaacctga-taaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataa---aaactgcatggtactggtata-gagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa-cagca----atggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtg
s HiC_scaffold_1 218598455 3531 + 233722169 AATAACAACACATTATTAAAacctgtaagagaaaagaaacagaatacctacaaagaaaagtccaCGAAAATCACATAAGAATTCTCTACACAAATCCTCAAAtgaagaagagcttgaa-----gtactTCAAGTCTTGaatgaaaacaacttccaacccagattgatgtagcctacaaaactatctttgacaactgatggagaaatgaaacacatacatgacaaagaacaactaaagaaatt-catgtctatcAAGTCAAACCTCCAAAGAGTAcggaaagatattctagacagatacaaaaatgaccacaattccaagaacaacatcaGAAAAAAACCACCCA-CAAAgcagagcaagcaattaaacagaggaaacAACAGGGAACCAACAGCAAAAAATAACGTGACAAAGATAACCCAAtacatatcacttataaccattaatgtaaatggcctgcattcaccaatcaaaagaaatatattgGCATAATGAACCCAGAAACAATATCTAGCAATAGGctgaatacaagaaacacatttaacttaaaaaagaaactcatagactgaaagtgaaaggacagaaaataataCTCTATGCAACAGATAGGTACCCTGAAGaca---gcaggggtagctattctatttgcagacaatgtaaacttcaaaccaagaaagatcaaaagagataatgaaTGTTATTATACACTTACTAGgtg-aaaattcaagagaaagagataaaaatcataaatatatatgtaccaaatatgggag-aactaaact-atgtaagaca--------aatgtcaacagacatgaaaaaaataa-gcaataacaatgaCTATAACAGGGGGACTTTAATACCACATTGTAA-CAatagatagatcaattagacaaaaaaaaaaaaaaacagcaaagaagcaacagaattgaaccaaacttgt-aaataaatggacttagtaaactTTTAAAGAGTATttcaccataaaaaaaaaaatcttaattcacatgcttctcagttgcacatgggccattgtctaaaacagaccatatactaggccatagaacatgcttaggtaaatgcaaaggaattaaagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCAGGAAA------ACAGCACATGC--ACAAATATACAACGTAATGTGCATCTGAA--CTTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaa-agaaagaaaagactcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaagaaggtataaaaagtTTGAAta-----acat----taatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaat-aaatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaaa-aagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaatacaattaacatatcttacagatctagaaaaaaacat-------tccctttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaaagtc----tttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtca-----aaatggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTCA-----ATAGGGGTAGACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttca-----aagaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=26779
s chr3            31774370 1772 + 160039680 CAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAAC-------------AGAAAA----AAACCAATACAAGGACTGGAACCACGC--CCTAGAAAAAACAAGAAGATAATCCCTCAACAA--AACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACA-----GGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCA-AATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGA-CAC--CTTAGT----AAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGA---ACATTT-TATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGG-------AAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGC
s HiC_scaffold_1 227404779 1666 + 233722169 cagtcagagaaaaacaaaaaattatatatca--------------gaatttcagcagacttctcaatacaaatctTAAAGGCCAGAAGAGCATGTGAAG----TATTTCAGCACTAAACACAAATAACGTCCAACCTCAGCTAACCTACCCA-CAAAGCTTTCTTTCAGAATAGGTGAAGAAATAAGAGTATTTCACAAAAAAGACCAGCTCA------AGAGACTTATGACTCCAGCATTCCAAAAAGCACTCACCAATTTCCTAGGCAGAAGACGTGAAACCAAAACAGG--TCAAAACCTCGTGACACAAAAACACCAAGTAAGG------TCAACAGGtaagcaacaaaaaataacaagaaaagaaaaataagcaagtcAGTAACAGAGAAGGCAATAGAGCAAACAACCAACACTTCTCAGCGG-GCCTCTCAATGTTAATGACCTCAATTCCCCATTTAAAAGATGAGGATTCATAGACGGGATCAGAAAACAGAATCCAACTGTCTGCAATGTGCAAGAAGTTCACCTAATGCAAACAGatgttcacagactgaaaattaaagg----------GTACTTCATGCACCAAGACCTG--GAAACAA-ATGGGGTAGCAACTTTAATCCCAGAC-ATGTAAACTTCAAGCTAAAGCTGACTAAAAGAGACAAAGGAGGCCACTACACCCTGCTCCAGGGAAGGATGTATCAGGAAGAA---ACACTGGTAAGTATTTCTTCACTGAGTATCAGGGCACCTACCTTCATAAAACAGCACTGCTGAATACAAAAGACTCCAA--ACATGTTA------ACACGCCCAGAGTGGG-GATCTTAGCACCCCACTTTCACAAA--GTCAGGTC----AACTAAACAATAATCACAGAAACATTAGAATTAAACCACACCCTCAAACATACCGGTGTACTTGATATCTACAGATAGATACCTACATCCCAACACAGCACAGTACACGTTCTTTTCCGCAGCACACGGTACTTTTTGCAAGATAGATCACACATTAGTCCACAAAGcctgcttaagtaaatataaaggttTTGAAATTATCCTGTGTGTACTCTCAGACCACCATGCAATGAAAATAG-----AGTTgcagaagaaatagcagaaaaggTAGAAGCATCTGGAAAACTAACAACACACCTATACACAAC-CAGTGATTATAGAAAAAGTCAAGAAA--------------TTTA-----------------------AACTCACCAAAAACTCTGGGACCCCAAGAAAGCAGACCCGAGAGAAAAGTTCATTGCAAACAATGCCTCCATCAGGAAAATGGAGCAAGCTCCAGTGAATAACCCCATGAGGAATTCTAAAATACTTGAGAAACA-----CAATTCCGGCCAAAACAAATTAA-GGAGGGAAACTAT-aacattagagcagaaatcaatgacatggaggctaaaaacaaacaaaaataatgcacAGATCGGCAAATCAAAgcactggttctttgaaagaataaacaaaacagataggCCCG----AGGACTTACCACATAGTGCAG-----------------------CTAGAAATGCAAAAGATGAAGTCACAACAGACACTGTCAAAATCCagaatatagtaa----ctactttaaaaaacTCAATTCCAACAAATtggcaaattttaaagaaatag----attcctagatgcatataaattaccaaagctaactcaagaagacacaaatatgCTAGACAACCCAGTGACAAGCAATGAAAtcaacacagtaaaaaggaaTCTGTcagc

a score=44827
s chr3           31774379 2638 + 160039680 AAAAAGGTCAAGTAAC---ATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATA----------------ACAGAAAAAAACCA----ATACAAGGACTGGAACCACG----CCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGA-ATGCCAACTTTAACAACAAA-AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCT-----------------------------------------------------------------------------------------------------------------AACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCAT----TAAAGACACCTTAG--TAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGA-----TCTTCAATAACAACAT---AAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCAC----AGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCC----AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCA----------------------------------------------------------------------------------------------------------AGAACATA-TTAAAGCAATCATCCATC-----------------------------------------------------------------------------------------------------------------------------CTGACCAAGTAGGCT----------------------------------------------------------------------------------TTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTC--AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacaccctt
s HiC_scaffold_1 66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatataaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT--GGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAG---CTAAAAACACAGAACAACTAGTGAAATCAGTGAATaaa--catcaacaaagaaacataaggaaaagaaaaacaaaggatacaccaacataaaaagaaagcaatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagataatCA--------------AAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACACA--------AGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAATAAACACTA--------ACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagtt-cgAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAA--AGAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaa-taaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTA----ACACAGTAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaaga----aaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=47825
s chr3            31774428 3750 + 160039680 TTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA---------AACAAATACACACATTATCTCTCCACGA-----------ATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTT---TTCCT----TAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTT----CCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACC--TTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA-CAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAA-CACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCA---CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACT---CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGA--TGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG---------ATAAAGGTTTTGGAAAGATAGGAATTC--AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaa-gctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgta--tgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagc----aatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatg--------aacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaat----ggcttgtact-----------gtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatc-attacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtggga
s HiC_scaffold_1 228955059 3395 + 233722169 tttattttcaaaaattctgaCCAATACTAAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACA-ATCATCAAACTAGGACTACAAAACATATTCAATCCTACACAG-----CAAGAGGGAAAAACTATGAAAAAGGATAGACTCAATAATTAATCTAAATGGGAGAGTTGTttcacaagagag---aaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaatt--aaaatgataT-CTATGTAATAAGTGTGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATACTCC-------TCAA---ATAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT-ACCCATAT---TGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGG--GAAATTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAGG-TCAATGAAAAAAAG------TTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaagaa----gaaaagactcaTATCTAAgcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACA-GATGATAATAGGCCATGAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTTCCAAAAGCAatacaataaatcaataaa--------------tgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAATAG---TTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgt-aaagagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCCA-CAGAAGACTCTCAGAACTAATAGATAAATTCAGCCAAGTGGA-ATATACaaattaa--------------------------tacacaaaaatcaa-----------------------gaacattaccc---------------------------------------------------aaagtgatatatatatacttaataaaaat-------------------aaattgaa----atatcaaa------------------------------------------------------gtttttttttcataa-----cTAGAAAGTCAAGTC---------TAAAATTCC------------TAGAGAACCAAAAGAGACCCAGAGTAGCCAAAGCTATCCTgagcaacaagaaaacaaaca-aacaacaac----------aacaaaaaaaca---ggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACATAGGGGAAA-CACAGGACCCATAGGCGCA-GGGAAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaagaaAA-----TAATGAGCCAA------CTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACT---CAACAGGTGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=83316
s chr3            31774485 4162 + 160039680 [encoded data, 4665 characters]
s HiC_scaffold_1 130105087 4470 + 233722169 [encoded data, 4665 characters]

a score=56020
s chr3           31774501 4050 + 160039680 [encoded data, 4696 characters]
s HiC_scaffold_1 33891658 4430 + 233722169 [encoded data, 4696 characters]

a score=41249
s chr3            31774511 2631 + 160039680 TACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCAC-GACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGA--TAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAA---------TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACC-----TCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTA--AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAAC----AACACTCTTC-----TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-------------------------------------------GACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCT---------ATGGGACACAAT---------------------------------------------------------GAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCA-AATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATC-CTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTA---ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccc-taaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag--tcacaaataat--ataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctga----agaaagaaattaaagaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAAATTTTGAAGACCACTAAGTGAGCACTACAAAAGT-----ACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAACATCAAAGAGACTAAAGGAATGAATACATTAATCA--TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCAT---CAATAACAGGTAC--ATTGAAAATTagatgatggaaaacaatacttcatgcaatgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATT--TTTAACACA----AATACTGCTGCACATAGAGGTCAGATAAACAGCCACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCAACTGGACA-AAACTATCAGCAAAGAATATGAGAGTTGAACTATACCTCTGAA-CAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaacca-tGGCAA-AGGAATCACAGAATTTTCTCAACCATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatg-------gataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca-gaaatatagca---------------ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAGT------------GGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACCTTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=22519
s chr3            31774664 2302 + 160039680 AAAAAACAAGAAGATAATCCCTCAACAAAACTAAA--AGAAGACAGCCACAAGA----ACAGAATGCCAACTTTAACAACAAAAATAACAG--GAAGCAACAA-------TTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGG----AGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCA---CAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAAT-GGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATG-AAATTGTCCCAT---GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATA---CTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAA-----------GAAGAACTATTC------------------------AAAGAATTAACCAAACGAGG-----------AGTTGGTTCTTTGAGA----------AAATCAACAAGATAGAT------AAACCCTTAG--------------------------------------------------------------------CTAGACTCAC----TAGAG---------------------------------------------------------GGCACAGGGAC-----------AAAATCCTAATTTAC-----------------AAAATCAGAAATGAAAAGG-----------------------GAGACATAACAACAGATCCTGAAG----------AAATC---------CAAAACACCATCAGATC---------------------------CTTCTACAAAAGG----------------------CTA--------TACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATC---AAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAG----AGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA-------GGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttct
s HiC_scaffold_1 115153521 2419 + 233722169 aaagaataaaaataaa-----tcaaaaaatgtgAACAATAAGACAGAGACAAAGTAACAAAGAATGtacaaactaacaacaacaatAGTGATAAAAGTAATAAACTGTCTTTACCTACCAGTAATGACTTTGAATGTAATTGGACTAAGCTCCCTAGTTAAAGGATGTAGACTG-CTGAATATCTAAAGTAACAAGAC-CAATTATATATTGCCTATAAGAAAATCATTTCACATGTAAGGACACAAGTAGACTGATGGTGAAGAGATGGAAAATCATATTCTGTGAAAATG---------AGCAAGAGGGCAAGAATAGCTATGCTTACATTAGACACGATGGACTTCAAGTCACAAAAtgtaacaaaagacaaaaaaagtcacTATAA---CATAAAGGGCACAATTT---------AAATTATACCAATTCTAAATAT--ACGCAATAAACCTTGGAGCATATAC-TAGATAGAGAAAATACTATTAGATCTacgtggagagagagagagtaattCAATAATAGTAGGAGATTTGA---CTCCAGTTTCAGAAATGGGCATATTATCCAGAtagaaatcaaa--ggaaaatatcagACCTAA-----ACTGCTGTCCAGATCAGGCCTCAGAAACATTTATAGAATGTGTCACCC-AAAAGTATAGGGTACACCTTCTTCTCATCAGCACGTAGAACTTTTTCCATGATAGGTTACATGTTAGTATTTGAAACAAGtctcaacaaata--aaaataattcaaaatgagacattaagtattttttt-taccTCATTGGAATAAAGCTAATATTCA-CAGTATGAGAAGTTTTCGAAACTATGTAAGCACCTGGATATTGAACAACATATTATTGAACAATGAATGGGTCAAGGAAAGAATTTAAAAGGAGGTTAATAAATCTCTTAAAACAAGTGAAAAGGGAAGCACAACATACCACATCCTATGTGTGACATCACAGGTATTTCTAAGAGAG--GTTTATAGCAATAAATGCCTGCatcaaaaaattt------acaaatatctcaaatagTTTACCATTGCACctcaagaaaccagaaaaacaatatCAAACTAAGTCCAGAATTAGTGGAATGAAAGGaataataaatatcagagcagaaatgagtGAAAAAGTGACAAAGATATGTAaggaagagtttttttttaaaggcttttagATAGATTAAAAAGCAAGATTCAAATAAAGTCAGAGGTCATAATGGAGACTTTTAAATTTATGTCACAGATTAACAATAGAGATAGCAAGAGACCCTTAGAAATAACCATATGCTAATGTATTTgtcagttttctgttactgtaatgaACACTTAATATAAAGTTTGTTTGGACTCACATTTTAGAGTGTTTGATCCATCCGGATCTGTTGTTTGTAGGCCTCTGGTAGGGAGCAGGAAATCATGGCAGAAAGACATggtggagcaaaactgcttaCCTCCCcatcagaaactgaaaaaaagtgaaaaaagaaagggctggggtctCCTTAGTCCCTTCAAGGGCATGGCCCCAATGACTGAAGTCTTCCCTGTAATTCTTCGCTTCTCAAGTTACCACCATGTCTCAATACTACCATTCCAAGGATCAAGACTTTAACACAAgggcctttggggaacatttcagatctaaactgTAGTACTCAA-GAAACTGGAAaacccagaagaaatggataaattcatgAATACAAAAAACCTCCCTaaattaaatcataaataaaaagttaaacagatGA---------------TAAATGagattgaaaaaataatgaaagttctCTTG-------------------TAGAGTAGCTCATTGCTGTATTCTGCCAAACATTTAAGGAAGAACCAGTATCAATTCTTCTGAAATTactacaaaaaaatcacagaggaGGAAATTGTTCCAA---AGTTGATCACACCATCA--------------AAAC--CAGACAGAT---GCAAGGATAGTTCCAAACATTCAGATCAATT------------------------------AATGAGAT--------------------------------------ACCATTACGA----------------TTAGAgttaaaggga---------aaatgaaaaaaaaactatgataTC--TCATATTAACAAAATCAAGGATAAAAACCTTATGGTCTTTTCCATAGATacataaaaagcatttgataaaattcaat-ccTCTTCATGATAAAACAAGTCAATTGTAGAA------------------TATACCTAAACACGGTAAATACCATATGTGACAAACTCACAGTGGACATCATATAGAACGGGAAAATTCTGAAGGTATTCCTGT--AAGTCTAGAACAAGGAGAGGTTGCccacttttactatttttatttggcATAGTAC---------TAGC---AACAATTAggtaagagaaagaagtaaagtaCTTCCATATTAGAAAGGAGAAAGTAAAACTGTCCTCATTTGCAGGTATCACAATCTTATATAGAA---AACCTGAAAACTTCAATAAAAAA-TGCTAA--CAAATACACAAATGCAATGAAGTTGCAAGATATAAAATCAGCATACGAAAACTGGTAGTGTTTCT

a score=46791
s chr3            31774697 3212 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAG--GCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACA---ATTCTGAATATC---TACGCT-----CCAAATGCAAGG----GCAGCCACATTCAT-TAAAGACACCTTAGTAAAGCTCAAAGCACACGT-TGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGT--------------TATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTA--TCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATG--CCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACC--AGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA----TTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaa--catagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattg-taaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattaccta-----tcctaaatcaaataggggactaatatccaacatatataaagaa
s HiC_scaffold_1 216972207 2954 + 233722169 AAAGGAACCAGCAACAGGAACATAATGAAGAC---AATTTCAGAAATAG-----GTTGACATCTAC----CAGTAATATCTCTC----TAAATGGTGCAAAATCCCTAATCAAATGAGATTGCTgttg------tggctgaaaagataaagcTGTGTGGTATGCTCTAAACAAAAGACACAATTAATCCAAAAATACATTCATGCACTagaaatagaagaatgaaaaacaatattctatgcaacTAAAGCCTAAAAACAAGCAGGAATAGTTATCTTATTTTCACA-AAAAGTGCATTTAaactaaaactgatcagaagagggaaagaaaaacataGCTTATTGGTTAT-GGCAAAATTCaacatatatatgttatatatgttttatatattatatatgttgtaTACCATATAtgatattttgcatatatatatatatatatatatatatatatatacacacacacacatataccccTCAGTcacacataa-----------aacaaat-------attactggAC---CTGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAatattagttatttatttattgaacaaGTGGAgctaatagatatctacagagtgttccattcaacaacaaca--acactcaTTCTTCTCAGTAGCCCAAAAAACTTTCTCCACAATAGACCATATATCACCCCACAAAGCATGGTT-AATAAATACAAGTATC--------------TGCAGCTTAAATCAGATTATAacgcaatgaaactagaaatcaagcAAAAAATCAGAGATATTATTCAAACAT----GAGgacatgaaataatacatttt--aataatcaGTCagccacagaagaaatcaagaaagaagttAGAAAGCTCCTGCAATCAAATGACAATACTGATATGGCGTAACATATCCTGTGG-ACACAGTGAAAAAAGCCGTAAGAGTGACTCTTACAGTTATGAATATTCATGTAGGAAAAAATAG-AGCAATCCCAGACAAATAACCCAACGA----------GGTCCCAGATAAACAAGAA--CAATTCA------------AAGCTTctataagaaatgaaattaaaaggatgagATTGG--AAGTTATGATATTGAGaatga---aaaaatacaacaaattgaagatctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTTACCAGA---------------------------AAAAGTTGAAATTAAA--------------------TCTATCAAAGTCCTCAAGATCATTAACAACCTCTTTGAAAGTAAGTGCTGCATTAAATTGGAGAATCCAGATGAAATAGATAGATTtctagatatatatatacattgccAAAACgaaaccaagaaaatataaaagctgTGAATAATTCAATAACAGGCAataaaattgaagcagtaatgAAAACTT----------------------ACCTGATAGATTCATTGTTTAATCCTACAAGAACTTCAAGATGAATTTAACgccaatactttttaaattttttaatgaaaccaAAGAGGA--GTACTCT--TCAAATCATTTCTAGAAGATAGCACCACTTACCCTGATTCTAAAACCATTCTAACACCCAAGTAGGAAAGAAAACTACAGAGCAATCCTTTTAATGAACATGAATGCAAAAACTTCCAACAAGATTCTGGataaacaaatc---------atcaaaaacattGTTTATCATAACCAAAATGGCTTTAGTCTAGTGATGTAATGGTGg-ccaacatatgcaaatcaataaatttaatagacaacg-aaacagaagcaaggacaaataTCATATGATCATCACAACAGA-----GAAAAATCTTTGAGAAG---TGAAACACATTCATAACAAAAACCCTGAAGATCta----------------atctcaatctgataagagcCAATTCTGGTAAACCTTctgccaatatcatactaaaaggGGGAATGCTGAAAGAATTCCCTCTAAAATTGcaaagaagacaaggatgtccg----------aCAGTTTCTATTCAGTGTACTCAAAACATGAGCTAGAACAAT----CAAGagaagaagataaaaaagaaatgtgtgggaaagaaagaagtc---atgttactatttgcagatgactcgATCCTTTATCTGAAAGACTCCAAAAATTCCACT--AAGATTTTTAGAACTGATAATCATATTCAGCAGTACAGTAGGACACAAAGTTAACATACGAtaatcagtagcatttctgtgCACCAATAACATactcacagagaaggaa-------aaataataccattcacaacAG-CACTGAGAAAAAGTAATACTTACAAATTAACCTATCTAAAG---------------------AAAACTACAGCT-Tctgaa-aaagagattgaaaagaaTACCAGA-------------TCACTTTTTCCTAAATAAGCAGAACCTATATTGTTGAAAATAATCACACTTTCAAAActcatatataaatttaatttattcccAATAAAAATGGGagcagcattcctcacagaactagaaaaa--aatcctaaaattcatttggaaccagaagagatccagcatatcaaaagaaatcctGGTCAACAGAAGGAAATCAAAAGCCATCA-CACTCcagatttcattttatattgcaaagctacagtgataaaaacagtattctGTTGGCATAAAG-CAGGTATGTAGGTCAGTGAAACAGAG-AGAGGCCGCAGAAATGCCCCGAGGCACAttcagccatctgatctttgacaaagggaccaaaaaatTACACTGAAGAAAAGATAACCACTC--ACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGA--------------CTATCCCTCACCatgcagtaaaataaa----aagtagattaaatatctaaatattaaaacagaaatctgTAGTCCATTAGGAGATGAACTAGGTAAAA--CTCAAAGATACAGGACTAAGTAAGGATTTTCTGAGCAGAACCCAAgttacacaagaaataacattaagaatcaataaatgaggtTACATCAAATTC--AAAGCTCTTCACAGTAAGGAaaaccaccagcagagtgaagagtcaatgtacagaatgggaaaaatt--ttatcCAGCTACTCC----CCAGACAGAGAACTATTGTTCACAATATGTAATGAA

a score=5458
s chr3            31774732 294 + 160039680 AACAACAAAAATAACAGGAAGCAACA----ATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGA--AACAAGATGGAGTAGCCATTT-TAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGG
s HiC_scaffold_1 185583315 279 + 233722169 agcagtgagtgtggcaggctgcagcagcccagTACGTGTCTAAAACAACTTTGAAGGTAAACATACTAAATGTCTCAATTAAAAGATACAGTCCTGCTGAATAGATACAAAAACAAGACTCAACAATATGCTGCCTTTAAGAAACTCACTTCACCAGTAAA--------------TAAAGTGAAAGACTGGAAAAAGATAGTACATGAAAA-----TGAAGACCAAAGAGCAGGAGTATCTATTTCTTGTGTGAGGCAATATAGACTTAAGAT---GAActgtaaaaatagacaaaaaaag

a score=32209
s chr3           31774762 2521 + 160039680 CTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATG----GAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACA-AGGAGGGACACTTCATACTCATCAAAGGTA-AAATCCTCCAAGAGGAACTC--ACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGT--------------------GGAAACAGA----------------------------AACTAAA--------------------CAGGGACACAGTGAAACT---------------------------------------------------------AACAGAAGTTATGAAAC--------------------------------------------AAATGGACCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAAC--CACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGA-TAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagta---gctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaa---gtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattca
s HiC_scaffold_1 42973449 2236 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTTA-----TTAAATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGAC-TAACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagacaGAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATA-----------AATTGAATAATTTCTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaaca------aaaccaaactaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATC----AAATCTG--TTAGCAttgcaggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgg----------------------------ggagaatcatca-----caagtttga--------------ggtcatct---------------------------------------------------------------------------tgGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAGAC--TTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTA--------AAAATACTCcag---gaatcaacctaatgaacaggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaa-aatcaatactaaaacTCA

a score=78675
s chr3           31774776 3818 + 160039680 CTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAA--AATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTA-----AAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAAC-TAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCT--------TCTCAGCT------CCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAAT-GAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTC---TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaat---agtca-caaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacaga-ttcaatgcaatccccatcaaaattccaactcaattcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaac-----ccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatc--gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaac-aaattgggaaaggat--cattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggt--ggacttcagaaaagcaaataaccccattaaaaaatggg---------------------gctcagaa----------ctgaacaaagaattctcacct------------------------------gaggaataccg--------------------------------------------------------------------------------------aatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgcc---ccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcattgataagtggatattagccccaaatctaggatacccaagatataa
s HiC_scaffold_1 75496062 3791 + 233722169 ctctcaatgtgaatggtccTAATTCCCCaatgaaaagacacagattggcagagtagatcaagaaacaaaactcaaCAATGTGCTATATTCAAGAAGCACAATCcaaaaagaaatgtacagatta----AAGCTAAAAGGATGAAGAACAGtgttccatgtaacaggaacccagaaaaaggtaGAAGTAGCTGTCTGAATTTTAGACAAAATGGACTTCAAGACAAAACTGATCCAAAGAAGCACAGAA-----------AATCATTATAAGGAagcaattcaacaggaagagctAACAGT-ATAGATATACATGCATTGAACACTGACTTGTCCAACTTTATTAAACATACTAtgggacataaaagatcaga-taaacagcG------ACACAATTATAGTGGGAGACCTCAATA-----------------gtcagatcaattagacaaaaaaatcaacaatgagatATCAAAGATGAACCAAATCttcaaacaaatgaatttaaCAGTTATctacagagtgctccatcc---aacaGCAGGATACATGTTCTCAAAATCATGTGAGATGGAAAGTCACatgagactttctccaaaattGACCACATC-CTGGCTTTAAATCATGCCtaagtatatggaaaaataatctaaattttaCCATTCATATTACCaaatcacagtgcaatgaaagtAGAAGTcaagagcaaaagaaaccacagaaa------------------attaaACCATATCCTCTTGAATAATTGAtggttcacagaagaaat---taaaaatattagaaagtttttagaaataaacaataataccaTTACAGCATACCAGAACATATGTGTCACAACGAAAGCAGTCCT--GAAGTAAGTGGATAGCtctgaatgcccacatcagaaaaacagagcaagttcaAATACATAACCTAGTGTTACACTCCAAGGTCACAGAAAAACA--ACATCAATCCAAATCCAAAGTTAGTAcaaggaataaaattataaatatcagaacagaaatcagtgacattgaaactttgaaaatta--caaacaatcaacaaatcaaagagctggttctttgaaaaaataaaca-----gacaaattcCTACTCAATCATatcaaaataaagagagaaaagatcCAAACCAATCCAGTCAGatacaaaaaaaggcaaaatcacagcagacattgctgaaatccagaagataatTAGCAATTATTTTGAGGatctgtattttaataaattggAGAACTCAGAAGAAGT------ATGTCCCTTACATGCATGTGAATGACCAAAACTGGaccaaga-aaatttaaataccCTAAAA-TCCAATAACggacaatgaaattgaagaaat----gaaaaactaccaactaagaaaactTCAAGTCCCAGTGAGTTGactgctgaattctgtaagaacttTGGGGAGGATCTAATGCCAAAATTCTTTAAATCCTTcagtgaaatttaaagggaagggATACTCCCAAAGTGACTCCTAGAAGACATCATTATCCTTTTTCTAAAACCAAGAAAGGACTCAACTAATAAAGAGAAGCACAGACCAATCTCTTCAAAGAACATCAATACAAAAGTTCTCAATAAGATACAGGCAAACaagatgcatcaaatcatcaaaaacATCATATATCAAGTATAAGTAGGatccatcccaggaatgcagagatggttcaatat--------------atgtaataca--acacaaacagaagcaaggataaaaaacacattatcatctcaattGATGAATAAAAGCTTTTT--CAAAAT-TAACATTCACTCATGACAAAAA-CCTGGAAAAATAGTAA-TAAAGGATCTtatatcaatctgataaaagccatttatgacaaaccc-tGGCCAAC--CATGTTATACAGAGGAAAATTG--------tcctttaaaatcagaaagaagacaaggatgcCTACCATCACCATTCTCATTCAACACAGTTCTTGAAATATTATCCAGAGAAATCTAGcaagagaaacaatgaaaagaGATCTCTATAAGAGA----GAAGTCAAATTAATATTATTT-CAGATGATGTGGTCCTCTACATAGAATCACCAAAGAATTTCACTGAAAACCATATAGCATTAATTACCAAATTCTGTAGAGTAtcagaatacaaagtgaac----aaaattcaa---cattcctatacacaaataataaactcatcaAAAgag-aactaagaaaataataccattcacaatacaattcattaagaaaaattaaacatttaggaATTGACCTAATGAAGAAAGTGGGACACCTGTACAagaaaaactacagtattctcaa-aaggagatcaaagaagacatcataaaatggaaagacaacccttCTTCCTGAATATTCAGGAT--------TCAAAATGATCATTTTTCCAACACTCATACACAGGTTTTaacacaatctcaatcaaaatgccaacagcaCTCCTCattaaaccagaaaaaaatactactaaaattcatttagaagcagaagagactcagaatagcaaaagcaatcctatgCAATGAGAATAAAGTGGGAGGCATCACATTCctggacttcaagttatactgcaaagccatattgataaaaacagcatggtactgaccaaaaactgaatatttgaatcaatagaacagaataggGGATGCAGAAACAATTATAGGCAACTCACCTAT------CTGATAtctgacaaagaagccaaaagcATACACAGATGGAAACATAATCTCTTTATCAAATGGTGCT-GCTTAGCCACacatt-----------------gaatctagacccatgtctctcatcatgtagtaaactaaaatcaaaacagttcAAAGTTCTAAaggttaaaatagaaataat----ctgctggaagataaaagagGTAAAACCCTTGAACACA--GGTGCAAGCcaggactttctgaatagaaaaaaa-------------taattccaagaatcaacaaataggatcatataaaattaaaaagtttctgcatagaAAATTAagtaaccaacagagtgaaaagataacctttggaatgaggaaaatattctgttaaatatttt---tcagacaaaagactgatatcaagaatacataaagaactctaaACAATTAGATCTCCACAATTGAAGA----CTGATCAAAAAACAGGCAGCTGAAATGAATGGGCACTGCTCAGAAGAAGCATAATCTGGATACAGGGTGCACATATTTAATCCCAGccctttggagactgaggcaggaggatcactgtgaactTGAGACCAGCCAGGCCACATAGTGAATTCTAAATCTGAATTATATAGGGAAATTacctaaaaatgattttttaaaagtaaaatggccaataaatacatgaaaaaaatgtttaatatccctgattattagagaaatgcaaattaaaacaacactgagattttacttTACCCTAAATAGAATGGATATCATGAAGAAATCAgataatagcaaatgctggtaAAGCCATT----AGGAGGAATATTTCTACATcattgatgggaatgtaaattagtacaaccattatggaatcCAGtacaaaaattcttcaaaaaattaaaactagaaattccgtttgacccaactattttccttctaagtattttcccaaaagagtcaAAGTCATCATAGTACAGTGATACACAGATATCCATGATTATAGCAACA----taataacagctaaatcttggaggcagcctgtatatccatcaacagCTGAATAGAT--aacaaatacagtatttatacacaatgatgTAGTACTGTGTCATAACAAAGAATAAa--caagtcatttgtagaaaaatggatacacctgGAGACTATAAtgctaaacaaaataaaccagacatacaagtttaaatatcacatgttctctcttata---------------------caagaaatccaaaatataa

a score=25069
s chr3           31774784 1819 + 160039680 ATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAAT--TTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTC------ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACA--------------AAAATAAT--GAAATTGTCCCATG-TATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGA--------AACTGAACAACACTCTTCTCAATGATACCTTGGTCAA----GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA--------CAT-CTAAAAGCTCTAG---------------------------------------------------AAAAAAAGGAAGCA----------------------AATTCAC----CCAAGAGGAGTAGACGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGAT----CAAG----TTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAA--TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAA-GATAGG
s HiC_scaffold_1 89719555 2099 + 233722169 ataAATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTAAAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaaatattgggcataaatattaaaaatacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTC-TCAA---GCAGATCAACTAGCcaaaaattaaccaaaaatatTAT--AGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaaatagacAAAGACTCAGACGTTTGTTAAGTATCCAAAACACCT---aatgaatcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAAT--------AAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=15284
s chr3           31774802 2442 + 160039680 CCAATAAAAAGACATAGGCTAACAGA---CTGGCTACACAAACAGGACACAAC-----------------ATTCTGCTGCTTACAGGAAACCCAT------CTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGG-ACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATT-CATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGT-TATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCA---AAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA-----------------------------------------------------------AGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGAC---AACACATCTAAA---AGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG--------GAAATAATCAAACT-----CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA--ACTATTC-------AAAGAATTAACCAAACGAGGAG----------------TTGGTTCTTTGA------------GAAAATCAA-----------------CAAGATAGATA---AACCCTTAGCTAGACTC-ACTAGAGGGCACAGGGACAAA--------ATCCTAATTTACAAAA----TCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCC------------ATATCACCTAAAGAAATAGAAGTACTTATTAATAA---TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA--AAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAAC-CACA-TGATCATCTCGTTAGATGCAGAAAAAG-CAT-TTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTAC-AGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatat------aagtgaccctaaaaattctaccagagaactccta------aacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggct------gagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtga-----------ctctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagat----ctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactc
s HiC_scaffold_1 46711019 2421 + 233722169 ccgataaaaagacaaaaaaaaaaaaaaaaccaaaaacaaaaacaaaaaaaaaccaagaacatACACTCTAACTATGCTGTCTACAGAAGACTTGTTGGAAACCCAAAGATGCAGAAAAGCAC--------AGCAAAAGGCC---------TCCCCTTTGCAAATG---TGACCCTTTGAGCTGG-GTGACTGCACCAAGCCCAGGCCAAACACACTTCAAGGCAAAACTGCTCAAAAGTACAAAGGATGGTACCATACATATCAATAAGAGGGTCAACTCATCAAGAAGCTGTAACAATTACACACATGTACTAGCCAAACAGCAAAACGCCCACATAACGcgagtcatatattgacagaattaaagggaaaaacag----tTTTACAGTAACTGGTGAAGATT--AA---------------AATAGGTAGAACATCTAGACAAAACACCAACAGGGAGATAAAGGATTAAACCACACTCTATGC--CAACTAAACCTAA------GCCACAGAGC-------CCACTCACCACAGAATACAAGTCCTCCTGAGGTGCACCAGAAAATTACTCCGGGCAAAACGAATGTATATGAGGTGACAAAA-ACATCTCAACACATTCTAAATGATTCATATCATAACAAGTATCTTCTCGCACCACATtggaataaaactaaaatttaa-aaaaaccta-------------------------gGAAACT-CACCACACACCTTTAAA----------GTGAAGGAAGAGACAGAACAAG---TTGCATGATTCCTtgagacaaatgaaaat------acagcacTGCAAAACCTGTGGGATTTGGTGAAAGCCATATTCAGA-----ATTTATAGCTATAATcacctatattttaaaaagcagaatgatCTCAAATCAATAATCTTGAGAAACtgggaaaaatagtaaaaaaaaaaaaaaaaaaaaaaaaacactagcagacagaataaaatacagtcagactaaagttaaatgaaatggagagcagaaaaacaaaagagacccaAACAAAAGCTAAAATTGAGCTGGCCAAACCTTTAGCTAGAAGGACAAAgggcaaaggaagacagaaagacgACTTTTCGGTACAGAAagtggaagccaggcatggtggggcacacctgtaacctcagcactttggaggctgaggcaggaggatcacagagtttgaggccagcttagggtagatagtgagttcaagaccagcctggactgcatgtcacaaaaccaaaccaaaccaaaccaaagacacaaaaaaacttaaaaaggaaaGTGGAACCATTACTACTgacattaaagaaattt------ttacaaGAAGCTATTATGAATAACTGTACACTGACAAGTTAGGTAACTGCAGTGAACTCTAAAAATTGATAGAAATACACAAATGACCTCAACTcaataaataagaaacagaaaatcacaacagattttaaggagaataaaaataaagtaaaaataaagacataatcCATAATCAATACCTTCCaagaaagaaaagtccaggaTTAGATGACTTCACAGGTAAATGCCAAGGTAATTTTAGTAAGATGA----ACACCAATCTTTCTTAAATTCTCCCA---AATA----TAGAAGATACAATACCTAGTCTGTCCTACCAGGCCA-----ACTCTAATATCAAAGCCA----GGCACTCATcacaaaaagagaattacagactaGTATCTTCTATGAATATGGATGCAAAACACCTCGATAAACTGCTAGCAAACTGAGTCTAACAATGTATTTGAG-----AGTTATATTGATTAAG------------AAGGAATGCAACAGTGATTCAGCCTA--AAAATTCATCAATGTAATTTACCAAATTAATAGTATGAAGAAGAAAGATGCATATTGATTATCTCG------ACACAAAAAgtcatctttaaaaaatttaatatattttcatggtGAAATACTCAGAATACTAAGAATAGAAGGAAACTTCCTCAATGTAATAAGGGAAATTTATGAGAAAATTCATAGATCACAACACAGCCAATGGTGA-AAACTGGACGTTTTTTC-------CTATGAATGAGATA----------------------------AACATTGTATTAGAAGTTTTaaccagaacaattagataagccaaagaaataaaacatatccaaatgagaaa----gaaataaagctat-ACCATTTCTAGACGATCTGatcctttttattaaaaaaaaagagcc-aaagaaTCCATGAGAGAGCTGTTCAGTAGTAAGTTCAGAAGTGTTTCAGGTGTAAGAACCACACACAA-------------AAAGCAGTTGCATTTAGCACT-------ATAAATAGGCTACTTGAAAAAAGgaggttaaaaaaataattccattcatgatgaaacctaaaaaaataaaatgcctcaGAACAAACTTTGCCCCCCCCAAAATACAGTTACTGAACACTTATACACTGAAAACCACAAGACACTGGTGGGAGAA---AACAGAGGCCTGAACGGGGGGAAACATGCCACTCATCTGCTCAGAGGTCAGC-----------------------------GCCAAGGCCA-TCTGCGTATCCAACACGATTTCCATC-CCGTTCCAACCC

a score=72144
s chr3            31774805 3719 + 160039680 ATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTT-ATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACA---CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCT--AAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATG-AAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG--------ATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTA--ATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAA-AGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataa---actcaaacaag---tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatg---------gaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat------gggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaag----atcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataacccca--ttaaaaaatggggctcagaactgaacaaagaattct-cacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa--cacattcacaa
s HiC_scaffold_1 110855274 3525 + 233722169 ataCTAAAAACTAGACTGGAAGATTGGAT-CAAAAACAGAACCCAAGAGTCTTCTGCATTAAAGAAAC--ATATAATCAAAAAAGACATTCATAGATTAAAcattaaaggatagaaaacaacttTTCATGTAGCATGGCACTTAAAACAAGCAGGGTTAACAATTTTAATATCAGACATTATAAACT--CAAGCTAAAATTGactagaagagacaaagaaggtccaAACATACTAGTGAAGAGAACAATCCCGCAAGAAGAGTCAACATTGATAAacacatatgcaccaaatgcTAGAACATCTATTTTCATAAAGCAAaaactactgaaattaaaaagtaaaataaacactaGCACAATCATACTAGAGACTTTTAATGTCACACTTGTATGAAGagtcaaataaattaaatataaaacaaacaaataaatgtcaGTTATAC---CACAACTT--TGAACACATGGATTTAATTCATAAATACAGAGTATCAGACCCTGTAAAACAAAA---TATGCATTAGTTTCAGCAACATatggtacattttataaaatagatcacatactagcccacaaaaccttcttaaataaatataaaaagaatttaaattactcCTCTAATGCTATCAGActg---tgaaaagaaaatagaaatcagtgacagaaaaaatttcagaaatgcaaaatttCC-TAGAAAGTTAACAAAATACTACTCTTCATCCAattggtcacagaagaaat-----------ttcaaaaattctgaAAGTT-AGTGAAAATGACTGTAAAATTCAATGAAACATCTGGGACActattaaatcaattctaagataaaatattattgtaatCAATGTTTATATTGGAAAAATAGAGCAAGCCAAAGTAAACAACTTTATTAGAAATCTTAAGATACTTGAAAAATAACAatccagt--acaaaacaaaattaa--ggaatgaaatTATAGAgattagagtagaaatcaataaacttgagacaaaaataactgt-aaaaacattaaaaaatcaaagagcttgttctttgaaagaatacatgaaatagataaGCCTTTAGCTAGACTCACCAa--gactaagagaaaaaaaaatactt---atattAAGAGA--ataaaggtgaaatcacaacagttTT----GCAATCCAAAAGAtcgtaactactttg---aaaaatttataatccaaaaaaataccaaattttgAAGAA------------CTGGTCACATATAAACTTCCAAAACTAAAAAAGATGTCATAAATTTGATTGATAAACTAGAAAT---------AAGTATGGAAATTGACTAAGCAGTAAAAAGTATACCAACTAAATATAGCCCAGGACTTGATTGATTTATGACTGAATTCTA-CAGTTTTTTAGA----ATGTTACATCAATACTCTTcaagat-tttcaaagaaaataaaggaattggAGTACATCTAAATGCAATTGTGGAA--------ACCCTGCTACCAAAACTGGATAAAAACCCAACTAGGAATGGAAACTGTAGGACTGTCTTCTTACTGAACACAGATGAACAAATCTGCAATAAGATATTAGCAAATTAAAATGAGCACATTATCAAAAAGATGATACATTATGATCAAGTAGGTTTTATTCCAgagatgcaagaatggttcaataTATATATAAGTGCACAAATGCAATATATAACATAAG-AAGGAGAAAGGTCAGGACCATATAATCATATCA--AGATACAGAGAAATCTTTAAACAATACTCAATGTCTCTTCATAAACAAAACCCTGAAGTAAATTGGTATAGAAAAACCATACCTGAGTGTGATAGA--CTATTTATAAAAAACCAATAGACAGTATTGTACTAAATaagaaaaagctgaaaacatTCCTCTTAAGTTCaggaagaaataaatgatatTCACTATCAAT---TCTTGTTAACAACTTActtgaaatattatttgaaacaacgaagcaaaacaaagaaat-aaagggatacatataggaaaagaGGAACTCAAACTATGATTATTTGtagatattaaaatattgtgCAGACAATACCCAAAGAAATCCA-CAAAATACTATTTGAATTAAGACA-AACTTTAGCAAAGTAGCAGGATTTaagataaaacacaaaaacaaagattCGTTAGCATTTGTGTATACC---AACGagtgggaagagaataaaattatgacAAAAATACCATTCAtagtagcttcaagaaaaatgaaatatctcaGAATTAACCCAATAAAAGGGATGAAAGA-CTTTACAAAGAAACCCATAGTACTGTGAAGGAGGCTCTTGAAatggacatcagaaaatgaaaaaaaaaaaaaaatcccct---cttCTGGATAGATAGAACCAgtattgtcaaaatgaccataattctAAAACTGTTATATGCATTCAATATactcctaatcaaaataccaacagaatAATTTacagatctaaaaaaaa-aacactaaaattcatatagagcTATAAGAGActgagaataacaaaagcaattttgggTAGTAAGAAAAAGGCAGAAGGCATAGTAATATCTGACTTTAAAC--TACTTCA-AGTaa-ggtgataaaaacagcatgacattaaaacaaaaacagatatatGTCTCAATGAAACAGAGGTGAGGATACAGAAACCTTTCCAAACATATTCAACTACTTGATCTTTAAAAAAGTGGCCATAAACACAAGTTGGAACTAAGACAGTTTTCTCAACAAGTGGTGTTAGTGTAACTGGTTATTGGTTTGCAGAGGATTGAAAATGGACCTTTGTCTCTCAccatacattaaattaaaatctaaatgcatcaaagttctaaacattaaaacagaaaagttaaacctactagaagataaaataggcaaatCACATGAAGACATACATGAAGGTGTAGGAAAGGATTTTACAAACAGAATATCAA----CTGTACAAGAAAGAGCAGCAAGAATTAACAATTGAGATTACATCATGTTAAAAAGCTTTGGTATAGTAGAAGA----GTcagtagagtgaagagaaaacctataAAGTGGGAAAAATTTACCAATTATTCC---TCAgagagaggactaatatctaggatATGCaac-aactcaaaaatat-------------ttaaaccaCCTAAAGTTAAGAAATGGGcccccaaaatgaagaaaatattttacagaggaagaaatacaaatggtaatcaaatatatgaaaaaaattttcaacatctctggccattagagaaaagcaaattaaggCAACAATAATATTCTATCTTTCTCCA------------AACattaagaaataaagcaatatcaaATGTTGGTGAAGct----------------------------ctggtgggaatgcaaactgaaacaatcattgtggaaatccgtatagagatttctcaaagaaattaaattagaaat------------------------------------------------------------------tatatgtatcaatattttaatggcaaa---atttgtaatagctaaatcctgggagcagcctgcatacagATTAACAG-gtagtggataaagaaaacatggtatctATATATAACAGAACACTACTTAGCAATAAAAGTGAGAGACCTGA-GACATT-TGAGGAGAAAGAATGTACCTGCAAAATACAgtgctgagtgaaataaaccagactcacaa

a score=8968
s chr3           31774994 588 + 160039680 CAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAA----CTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA
s HiC_scaffold_1 25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGA-CATAAAGAGTCAGATAGACTTGAATATAGCATAGTTGGTAACTTCA-TACCCCAGTCTCACAA-------------------------TAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGCGGA----------ATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGG---TCAATAATAAGTAATGAGAATGAA

a score=41268
s chr3            31774997 2564 + 160039680 CCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTC-----------------CAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACC--CAAACCTA-TGGGACAC------AATGAAAGCATTT-------TTAAGAGGGAAACTCAT----AGCTCTGAAT-------GCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG----GAAATAATCAAAC---TCAGGG------------GTGAAATCAACCAAGTG----GAAACAA--GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT------CACTAGAGG-----GCACAGGGACAAAATCCT--------------------------------------AATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacc--ttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagt---gaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttga-tcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaa-caattggtgctggcacaactgg
s HiC_scaffold_1 185915450 2554 + 233722169 ctcaaagtattTAAAAAGGGGGAAGATGGGGAGTGCA--ACCACCaggggttcaatccctggcactgcaggaaaggaaaaaaaggcataACAATTTCATATCTATATGAGCCCAGTGTTGGGTCATCTAAGTATATAAAGCAAACGTTAAtggacacaaaaagaaaaataggtagCAATGCCATAATTGTATAGGATTTCAATACTCCACTTTCAATA-TGGATAGATTAATCAGAcaggaaatgaatttaaaaatactggCTTCAAAATGCACGTTAGACAAAATGGACCTGATAGATACACATTGAAACCTCTGCccaaaagcaca-gaaaacatGTTCTTATTTAGTGTATATAGATCATTCTCCAGGATAGACCATGTGTTATGCAATGACAAAATTcctcacaaatttttaaa--atcaaact-caTCAAGTATTACTCTGAACTACAGTGACTTGAAATTAGGAATCATTACTAAGAGGAACTTTGGAAACCCTACGAGTACATGGAAATTAAGCCGGATGCCACTAAACAGTCAACAGGGCaatgaagaaattgaaagggaaatttttaaaattctagagaaaaatgaacatgaaaacacaacataattgcaggcatggtggtgcactcctgtaatcccagcactcgggaggctgaggcaggaggatcattgcaagttcaagaccagcctgggctacaaagtgagctcaaggccagcctgaact-gcatagtgagaccctgtctcaaacaggcaaaaataaataaataaaatcaac---agagGGATAGGGGTTAGTTCTGATATTATATAGCATGTTATGGTAACTATATATAGAAGAATCaattatgtatttcaaaacaaCTAGAGAAGAGCTTGAAGATT---CTCAACACagagata----tttgaaaatatgaaaatattagttA---CCATGATTTGACCATTATGTATTAGAAGCACGTATTCAGTGACAATACTGTGCCCCATAAATAGGTACAATTAGTGCatggcaattaaaaataaataaaatcacaggtAAGAAAAGAGATATAGCT---GATAccatagaaatacaaagaatcatgAAA--CTATTATGAACAACTTTacaccaaaaaattgaaaaatttt-----------ttggCTCCCAGTCATACAC-AGCTACCAAAAATTAATCAACAAGAAGCAGAAAATTCGATTATACCCATAGAGAGTAACAAGATTGGGCAA--TCTTAA-AGTCACCCA-CCAAA---------GGACTA-ATGGCTTCACTGTTGAATTCtcccaaacatttaaagaagaacCAGTATAAATTCTTCTCAGACTGTTCCTGAAAATCttagagaaaattatttca---aactcATTCCACAAGGCCAGTATTACTC-AATACCATAAACAAACAATGacaccataaaaa-agaaaactatacatCAATCTCCCTGAAGAACATAATTACAAAAATCCCCAACAAAATCCTAGCACACTGAATTAAGCAACACATTTGAAACATCACTCGCTGTAAACAAGTGGGGTTCATCCCCGGGATCccagaatggttcaacatatggaaatcaatcAACACGATTCATCACACTAAC-AACTGAAAGAC--AAACCCTATGATCATGTAA-TAGCTGCAGAAAAAGGATTTGATAAATGTTAACATGTTTTCATGATTAAGACTCT-CAAAAATTGgcataaaatgtacattttccaACACAGCAAAGGCTATCCATGACAAACCCACAGCTGACATCATACTGAATGCAAAAACGTTGACAAATTTTCCTCTAAGATCTAGACCGAGA-GTGAGTGCCCACTTT-----TACTAATATTCAGCACAATACTACAAGTCTTGGCCAGAGCAATTAagcaatagaaataaataaaagccatatGAATTAGAAAGAAGGAAGTCAAATTGT--TTCTTTGCAGATGACTTGGT----CTTAGAAGTTCAAACCTTAAAGCCTCCACCAAAAAACTGTTGATTC-AATGAACAAACGCAGTAAAGTTTcaggatacaa-------------aaatcagtagcattcctatacactaatagaGAACTCCCTGAAacagaaattaagaaagcaaTTTCATTTATAAGAGCTACCA--AAAATTAGATATCTAGGAATGCATTTACT--AGGAGGTAAAAGATTTCTATACT-AAATctataaaacattgatgaaagaaattgaagaaga-cacaaa------taagATATCCCATATTCATGGGTTAGAAGAATCCATGGTATTAAAATACCCATAATACCCAGAGCAATCTACAGAATCAATTAAATCTCTATCAAAATATCAATGtctttcttcacaaaaataga--gaaaaatcctAAGACTCATATAGAACAG-AGAAGACCCTGACTAACCAAA---------------------------GAGAGAATCAC--TCcctgattttaaaacatactaCAGAAGTCTAGTAACCAAAACAGCACAGTGCTAGTGTAAAGACAGACA--CAGgtcaacagaacaaaatagagggCTCAGAAATAAATCTGTGGATCTACAGACAACTGACTTTTTGACAAAGTA-CCAACAGCAAATACGGGGAAAAGAACAGTCTTATTAATTAAATAGTGTGGGGAAAGTTGG

a score=66874
s chr3           31775154 3135 + 160039680 CTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAAC-TAAACAGGGACACAGTGAAACTAA-CAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATT--CACGTGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATG--------AAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCA--TCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTC--CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAA--GGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAA-------TCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACA--AGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATA------------GGAATTCAAGGCCCA----------------TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcct----------------------------------------------------------------------------------------------------aaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctc-tatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcaca-------aataatat----aaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtata--gagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat---gggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactcc-----------aaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggt-ggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga
s HiC_scaffold_1 72973771 3131 + 233722169 ctaACACAATTGAagtgggggaccttaataccccatacTTACAAATgcataaatcaactagacaaaaatatcAACAATGAAATGATACAATTAAACAtagcctgtgaa-caaatgggcttggtGAATGTCTATGGAGTGTTTCGTCACAAAACAGAATTGTATACATTCTTGTCAGCTGCATATAGGACATTCTTCAAAATCAATCACATATCAGGCAACCAAACATGCTTTAGTAAATGTagaggaattgaaatcatcctatgcatattatctgatcatagtgcaatgaaagtGGAAACCAACaccaaagaaaatcacaaaaa--ctacattaaaatatggaaatgaaaGAACACTTTTCTGGGCAATGAaa---gggtcacagagaaaattaaaaacagaattaaatagtgtatatatttaaatgataatGATCATTTAAATGTATAACACACTGAAACTTATGAGACGCAATGGAAGCAGTCCTACAAGGGAACTT---------------CCACATCAGGATAgcagaacaagctcaaataaccaacctaatgttgaacttcaaatttctagcaaaagaacaaatcaa---acccaaagcttgtaggagagaggaaattgtaaaaataagagtagaaattaatgcaatacagactaagaaaacaat--aaaaactcaaTGTATTGaaaa----gttctttgaaagaataaataaaattgataaaccaccATAGAACATgatcaaaaagaggaaaggaaaaa--caaatccatgcaaatag-aataaaaaggagaaaatcaaaatggattccACAGAAATCAAGGAGATAATTTATACCTACTATGAGAACCTATATTTcaataagatgaaaaacacagaagaaaaggatagattcctagacacaatTAGATTTTCAAAGCTAAATC---accaaatagaaaaattataaataacctgatgtcagccaatgaaattgaaaatgtaatgaaacctttttaccaataaagaaaagcccaggccctgatggagtcactgttgaattttatcagaaatttagagaa---ctaatGTTACTAATGTTGAAACActttaaataaattgaaacagAGCCAGTACttt--caaaatcattcctggaagcacctATTAACCTATTTCCACAACCAGAGA---ACCCAACCAAA--AGAAAGCTacagaccaatcttcctaatgaatacagatttaaaaaaaaaaagtcctcaataagatactggcaaacagaattcacaaac-catcaaaaacGTCATAAACCATGACCCACTATGATTCATCTcagaaatgcaaggatggttcaacatacagaaatcaataaatgta-------atattagCAGAACAAAAGTCAAAacttacatgatcatctcaatagatacagaaaaagcatttgacattaAGTCCAAcacccactcatgataaaaacctacagaaaatagCAGACTTACAGGAAATTGCAAACTTACAGAAAAGGTGggctttacttcaatctgataaatggcatctatgacaaaccaatagctaatatcatattaaatggtca-aaattggaagttttctctctaaaattgagaataagacaaggatgttcg-TTGCCACCACTCTTGTGGAAATTTTAC----------------AGCAAtcggaaaagtaaaagaaagaaaatgaatgaagataggaaaggaagaagttaaattatcatcatttgaaGATGATCTGATATTCTttatagaagatcccaaaact-------------tTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA--------------TTCAGTAGTATgacaggatacaaagtcaacactcaaaactcagtcATTATTCTTGTACACCAACAACCAACtctcagaaagagaaattaaggaaaacacaTCCTT---AATAG-CATATTATTATAATAGCATccagaaattattat----ttaatctaacaaaggatgtgaaagatctatacagtgaaaaccacagtaccctaaaaaaggagattgaagaagatatcagaaaatagaaagatatcgcTTGCTCttaga-cagaaaaacaaaca--gtgaaaatggTCCTACtctcaaaactgctatacagatttcaTTCAATCACAGTCAAAATACCATGAAtgtatctcacagatctagagaaaacatatgaaaagttcatctggaaccagaagaaactgaGAATAGCAAGAGTATTTATGTGTaacaaagacaaaacagc----agGCAAGGCACAATTGCAGacc-aaaattatactacaaagctactctgcaaaaatcagcattgtattggcaaaacaaaacaggcctGAAGAACAGTGGAACAGaagagaagatgcagacacaactcctaacacactcaactaccttatttCTGACacaggagccaaacatgttccctggaaggaAGATACTCTCtataataaatggtactggaaaaactggttttccatatgccaaagaatAAATCTGGACTCATGTTTCTC-ACATGCATCAAACtaacatcaaaatggatcaaacatctaaacattaaaacagacaTTCTTTATTTActtgaagagaaaataggtagaaatcttgaaaacatacaGGTCACCAGG----AACTCCAGACTACaaaggaaa-------tactaca-----aagaatcaacaaataagatcac----aacttcttaaaaaaaaaaaaaaacctttgacacaaaagaaatcaccaac-agatgAAAAGAtatccaacagaatgaaaaattatAGCCACTTGTCCT---TCAGACAAGGagtt-atatctagaatataaaatgaactgaaaattatCAGGCcacctaaattcaaa-gacctaatctaAAAATGTACCtcaatac-------------------------------------------acac----aaaaaagttca-------ttgtcactcaagagatgcaaatgaaaacaacatggcattttcatctcactccagaacgaatggctgtcatcaaaaaatcagtgaataacAAAT-ctgatgaggctgtggggaaaaaggaacccttttgcACTGTTAATGcaattgtagactggtgcaaccactataaAAATCAATATCAAGATTCTTTACAAAACTAGAATTACAGGTCCGGTTTGatgcagctattccccttctgagtataatgtcagaaga

a score=46677
s chr3            31775157 3403 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACC-------------ACTTTCATCAATGGACAGATCGT--GGAAACAGAAACTAAACAGGGACACAGTGAAACT-AACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGA-------AAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTA----GACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAAT-------------CAGAAATGAAAAGGGA---------------------GACATAACAAC---------------AGATCCTGA-------------------------------AGAAATCCAAAACAC----------CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTA--------------CCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAA-TCTCCCAGCCAAAAAAAGCCCAGGA----CCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA-GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTA-ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTT---GGAA--AGATA-GGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcg----------------acaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccag---agaactcctaaacctgataaacagcttcggtgaagt--------------------------------------------------------agctgcat-------------------------------------------------------ataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaata--gtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaac----tcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaa--aactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctcct----tgtactaaggtcaaatctaagtggatcaaggaacttc----acataaaaccagagacactgaaact-------tatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaact-ccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgg-----gtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcattgataagtgga
s HiC_scaffold_1 103641626 3447 + 233722169 ATGCAGGAATAATGGGAAACTTCAGCACTCTCGACAATGAATAGATCATCAACAGTGGATAGATCTTCTGAAAGAGGAAAATCAATAAAGACACAGTGGATTTTGACAGCACTTA-GATTCAAAAGGATCTAATAGACAAATACAGAACATTCTATCC---AACAGGAGAAAACACGTTCTTCCCAAATGACAAgtggaaca---caaaaatt----atatgTTAGGTTCAAAAACAAGtcttaggaaatttaaaatt---gaaatcatACCAAGTATCTTTTCCAATCACCCTGGTGTGAAACTAAACATCAATAACA-------TAAGGAAAATTCATGAAGTG-GTGGAAATTAAGCAACATATTCCTAAGCAACCAATtagtcaagaaa--aataaaagctcagaggagaaataaaaaatgcctta------aataaaa-------cacaaagtagCAAGATTCAGTAGATGCA-TCAAAGTAGTTCTGACATCTACACTGAGAACAAAGATTCTCCCTAAATAAACACTGTAAA-----------------TT-----TACATcttaaggaaatagaaaaataagaacaaaataagcCCACAGTTAGTACaattaaaacaagaaa-gatcagagt-agagtagaaataaatgaaatagattaggAAAGAACAGC---AAGGGTCAACAAAACT--GAGCTGGGCCTTGGAAAAGA----CAACattgacaaacctttagctagactaacaaaaagagagaaag-caaacaaatattttatagagTACAACTGATTCTACAGAAATACAAAGGGTAGGGTAggggcacagctcagtggcaaagcacctgcctggcaagtgcaagatcctgagtttgatccctagtaccgaaaaaagaaaaaaaaaaaaaaaagacacatacaaAGAATTTGAGACACCCTTGTGAACCATGATACACTAACAAATTGAACAACCTGGAATAAATGGACAAATTACTACAAACACATAACATAACCATAACACATAACCAAATATGAattataaagaaatggaaaaatctgTAAAACTAATAATAAATAAGGAGATTAAATTTCTAATCAAAAAGCCTTCCAAGAATGAAAATCTCAAGATCTACCTGGTGGCTCCACTGAATAGTCCTACCAAACACTAAAAGAATACTTAATAtcagtctttttaaaatcattcccaaaaaaatgaagaagagaactTCCAAGCCA------CTTACAATTCTAGCATTACCTTTACATC---------AAAAGACACTACCAAAAGAGAAAGTTACAGACCAGTGTCACTGATGAATATAGAAGCAATGACCCTCAATAAAAAT-TAGCAAGTTGAATTCAATAGTACATGAAAAGGATCATACATAGCAATCAAGCAGAGCATATCCCTGAGG-GTatgaatgttttaatttataaaca------aatgtatATTCACT-----GACAAAATGGAGGGTAAAaa-tatatgatcatctcaataga--cagaaaaagcatttgacacaaTTTAATGTGCTTTTCTGATAAAAACTCTCAGTGAATTAGATACAGAATATAAG-----TATTTCAGCATAATAAAGAC-----------------CAGCTCACCTTATGTTCAAGAGTGAAACACCTACaacatttcctctaaaatcaga----ataaaaaactGCCTACTCTTGCTACTTGTATTCAGTATAGTACTACATGTTCTAGCCAGAGCCattgagaaaaggaagagaaacaaaacaaaagacagaaaaagtcaTCCAAATtgtaatgaaaaaattt---ttttttctttttgtggatcATCT-----TATACATAGGAAACTGTAAATACTTAAAAAGAACAAACCtgttagaaataataaatgactTTACTAAAATGTATGATCAAACATCAACATGAAAAATTCAgttatgaggggctggggatttagctcagcggcataagcgcctgccttgcaagcgtgtggtcataagttcaatcccttgtaccggtaaaaatacaaaaaac---aaaaattcagttaTGTTTCTACACACTAGGAATAAACTACTCtaataagaaat---gaagacaaTTCTATTCATAATAACATCACAAAAGGGATAAATTTAATCACTGTGACCT-----------------GCGTTATATACTGAAAATTGTAAAACATTCTTGCAAGGAATT---GAAGGTTTTAAGTAATGAAAATATATCTTGTGTTCATGGTTTGGAGGAATTAA---TGTTAAAATGTCTACACTACCACAAATGATCTGTAAGTTCAATGTAACCAATATTAAAATGTTGACAGCattatttttttcac-----agaaaaa--aattcaaaaatttacgTGGAATCCTAGAAGATCAAGAATCACCAAGGAAATCTTaagcaaaatgaacaaaa--ctaGAGACTTCACACTAgctaatttcaaaatacattacaaAACTGTAGccttgaaaacaaaat-ataagcatACAATAATAGACataaagaacaattgaaaaaa----aaatcccagaattaaatttaagcattcatgGCTAACTGATTTTCTACAGAGGTGTGAGGATCACACAGTAGAGAAAGGACAATCCCTTAAaaaa---atgctggaaaaactggaggTCCAAGTATAGAATGA----AATTGAACT---CTTTTTTCATATTATGTACAAAAGTCAACTCAGAATGGGTTA------TTCTAAAATATAGGATCTAAAATGGCAAGACTACAAAAATGTAGAGGAAAAGATTTTTGA---CCTTGAGGATA------------------TTTTAGTCATGACCCCAAAAATATaggccacaaaaacaaaaattgacaaGTGGGGGGGTGTCAAactaaaaaagcttttgcac-acaAAGGGGACCATTAACACTGAAAAGAGATAATctacaaaatgggagaaaatgtcTTCAAACCATACATCTGATAAGGAGCTAATATTCAAAATACATCAGGAACACAAAGAATTgaatagcaagaaaacaaa------aatttttaaatgggcaACAGACATAAATGAAcgtttctcaaaagaagatatataaatggccaaCAGCTATATGATAAAATACGCAACATCAGTAATCATCAGGGAAGCACGAATCAAAACCACGATGAAGTCTTACTTTAAACTTAT-AGAAtcactgttacaaaaa----aaaaaaagataaacgcTGGagaggaagttaaagaaga-aagtacT-GTACTTTGCTGGTGGAAGTATAAATTGGTACAGGCATTGTAGAAAACAGGATAAaggttctttaaaaaatgaaa------actat-----gctCCAGCAATCCCACTTCTAGGTTtacattcaaaagaaatgaaatcagtatacTGAAGAGGTATCTGTACTC--TCATGTTCATTGTATCATTGTTTCCCACAACCAAGATATG----AAATCTAAGCACCCACcaatgaagaaatgaataaagaaaatgtggtgtgtaTC----------TATTATTCAATT-TGAAAAGGAAGATAACCCTGTCATTTATGATCATTTGTGTGTACCTAAATGACCTTATCCTGAGTAATGTAAGCCAggcacaggaaaagaaatactACATGGTCTCACTTATATATAGA

a score=34453
s chr3           31775225 1865 + 160039680 AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCA-----CCATGGCCTAAGACTGATCT----------TCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTT---CTCAAT--GATACCTTGGTCAAGGAAGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCA-CATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGA-GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG--ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAAT------CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAA--TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGT--TTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1 38614221 1820 + 233722169 aaaagaaaaataaatgagttgaaacaaatttttgaacaaatgaacttaatagatatAAACAG--TGTTCCACCC---ATCAAGAGT---CACATTCTTTTCCATTGCATATGATAGTTTCTCCAGAATAGATCACA-----GTGAATAAAGCATTcctaagaaaatgcaaaagaatgaaaaatttaccatgcatattatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaaaaataataaatccccAAACCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACCAGAACTCATGG-CCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaataggaaaatccaAA-----CCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaatcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaagg-aaaaagaaaacacaagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAG----TGTGCAAAACAGTGAGAGAACTCAGAAAAAAC----------TCAGACA--TACAAATTCCCAGAACTGACCCACAA-AGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTT--CCAAAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGCAGGCAAAGAGAGTGACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA----GTCTAGCAAACTCTAACA-AAATTCTTGAAGAAAATTGTTTGGAAA--------------TTCTTtagtacaacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGA-AAGATGAACATCTTCACTCTGTTACCA------------------CCACT---------CTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGATGAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACTC-ACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtagaaata-aaaaaataaatacacaaaaaagaaaagcattcctA-ATAACAGTGatgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=29684
s chr3           31775258 2031 + 160039680 AAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATT-GTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA-----ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTA--CTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAA-ATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATA-TGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAG-GTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggag--agaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaa-attctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaag-----atggaaagatctcccat-gctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctgga
s HiC_scaffold_1 23001666 1857 + 233722169 aaaaaaatggac--AAGAACTATATACAgaatatttcaaacaaaaatgacaaaacat----tcTTCCCAAGAGCACAGACAAATATCTCCAAAATAGAC------------------Acacacttaaataaata--aaagtaatataatttATCCCATTCATATTATCAGACAAGAAtgcagtgaaactagaaatcaaggGCAAAAGAAACCATAGCCATTAtacaaaaacatggaaatcaaGTAATGCACTCA--AATAATGAGTGGGTCATAGATTAAATAAAGAAAGTAATTACAGAATTTCTAACATCAAATATTAATGCTGATACTGCACACTAGAAGCAATGGGACAAAACGCAAGTGGCGC--AGAGAGAATTTTAAAGtt-tgaatgcccaca-tcagaaaagcaAGATAGGCCAAAATAACTCTGTGATGT-----------GCTTCAAAcactgaggaaaaaaacaaacccaaaactagtccaaggaaggaaattataaatatcagagcagaaattaatgattttgagattaaaaaattacaattaatCAAAGAGTCAA--AAAt----------tcatttgaagaaa--agaaatatagaaaaagccTTAGTCAATcttataata----aaaaaggaaatacccAAAACAGAGcaattggaaatgaaaaatgtaagatCAAACTGGACACCTCATAAATAGAAATTATTAACAATTACATT---AAACACCTGTGCTCTAATAAATTGGAGAAGTTAGAAAAAATCGATAGAATCCTAAATACATG--AAGTAtgaaaacagagccaaaaaaatataaatattctgagTAATTTGACAAgtggcaatgaaattgaagcaggaataaaaataatctaCCAAC----ACAAGCCCAGAATATGATTAATTCAGTGCTGGTTTCTACAAGATTGTCATGGCAGATCTGACT-----------------------------------------TGCTC--CTCAAATAATTCCTGGAAACTAGCATTTACATGGTTCCAAAACCAgataaaaatctaaacaaaaagcagaa-tagagcccaatctctttaatgaacataaaatcaaaataatgataataatatacTGGCAAACATAATGCACAAAATCATCAAAATGATCATACATCATAATCAAGTAGGCTTTTTCCCAAGGATAAAACGATGGTGCAATGTACTTAAATTTAATAAACATAATGCATCAc----acaaaagcaagaac-aaaatcaGATGATCATAAAATAAGCC-CAGGCAGAGCCTCTGAC-AGATCTAGCA-TCATTCACGATAAAATGCCCAAAGAAAATAGGTGTAGAAGGATTGTGTCTCAAACTGTTAAACGCCACTTATGAAAAACCAACTGccaaaattacattaaatacaaTTACAAGACAAAATCTTTTCCACTGTAATCAG-----ATACaagaatgttgtttttatcact-cttatttaatacagtcttgaaaatatt---caaatcatggaagggacaaaaaaa---taaaaggatatgaA-TAGAAAAGTGAAG---AACACATTACTC-------------------TGCATGTAA--GACCCCAAAACATTCCACAaaatgactcctaaaattaataaccaaatttatcAATATAACAGGATgcaaaatcaacacataaaattCAATGAAGttt----------------------gtgaaaaagaaattagtaaaataaaatcatgcatGATAG-CACTAAGGACAAATAAATCCTTAG---AAGCTCACTTAAACAAGTGAgagatctatataaggaaaactACAATAATCTgaaaaaaggaatttgaaaag--CACAGCAGGAATTATAGAAATACTTTCAGTGGCTTA---ATAGCTAGAACTGatgaagtcaaaatgaccatatttccaaaactgctatacataTTTAATGAAGTCCTAATTCAAGTAACAACAGTATTCt--aacaa--tagagaaaaaaattctaaaattcacatgga

a score=10564
s chr3           31775269 582 + 160039680 CCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACC-ATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA--AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 96522416 568 + 233722169 CTTGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTTAAaca----caaaaatactgaaataatacAGTGCATATTAATGGGTCATactaaaatgaaatt--------agaaagccacaaaaaagaaactgctcagatCCA--TGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaataca--aatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=74575
s chr3           31775276 3247 + 160039680 GATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAA----TAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAG-----CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCA---AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACT----CCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA-GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTA---AAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAA---GATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctac-cagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaa--------------------------cttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcac-----ttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacct-catgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattggg--aaaggatcattaccta-tcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaa--aacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcata-tatccag-------aagatgccccaacg-ggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
s HiC_scaffold_1 52903767 3081 + 233722169 GATATATACGGAGTATTTTACCCTTTTACAACAGAGTATACATCCTTTTCAGGAGTATAtggtactttttccaaaatagatcacatactagtcCACAAACCAggt-taagtaaatataaaagaattaaaattatcctatgcataccATTAGACCATTGtgcaatgaaaacagaaatcaatgacagaagaaaattttaa--aaaggcaaaaactcc--tggaaaattaacaatgtactcctaaacaaccagtggtccacagaagaaatcaaagaagaaagaaa----tttctggAAGTCAATGACAGTGACTGTATAACTCAGTGAAACCTCTGGGACACTACAAAACcaattctaagaggaaaattcTTAGATTTCAATCAC------------------AGAGCACACCCAAGTAAATAACCTTATGGGCAAATTTATGATACTCAAGAGACAAGAAACCAACCCCACAccaaa-------attaaggagaaaaattaaag--agagtGGAAACTGATAAAATtgagactgaaaaaaataaacagtaaaaaatcaagaaattgaagagctggttctttgaaagaatgaataaaatacataagCCATTAGCCAGACTCACCAGGAGG----------AAGACTTACATTA-atgattagaaatgaaaaaggtaaaatcacaacagataatttcaaaatccagaagatagtaa----ctactttgaaaatttatGCTCcaacaaattaacaaattttgaagaactggacagatttctagacacataCATACTACTAAAACTAACCCAAGA-------AGTCATAAAAATGCTTATtccaataacaagcaatgaaattgacaCAGTAATAAAAAATCTACCAACTAAGGAAAACCTAGAACTTGataa-ttcactgctgaattctacaaaatcaTTAAGGATGTTACACCACTAATact-ctcaaactcttcaaagaaatttaaagggGATGGAGTGCTCCCAGATTCATTTATGGAAACCAGTGTCCCTGTAATCTCAAAACCAGATAAAGACTAGTTAAA-----AGAAATGTATGCCCATCTCCTTAGTGAATGTAGATGCAAAACTCTTCaacaagatattagcaaatagaat------acaCATTACCAAAAAGACCATACATCATAAC---GTAgttttcatcccagagatgcaggtatggttcaacatacataaatcagtatatgtaatacatcatataaaCAGGAGCCAAGACAAAAACCATGTGATCATATCAGTAGACACTGCAAAGGCTCTCAACAAAAGCCAACACCCCTTTA---------TTTTGAAAACGGTATAGGAA------GACCATACCTGAATATGAAAAAAGCTAT-TGTGACAAATCAGTAGC------CATACTAAATgtggaaaaactaaaaacattccc-CTAATGtagggaacaagacaaggatgtccactgtttcctcttctgttcaacaaagtacttgaaatattagccagagcaattaggcaagagcaagaaataaaagggCTACATATAGGAAAA---GAACTCAATTTATCATTGCTTGTAAATGATATGGTACTGTACATAGATGATCCAAAGAACTACACAaaaaaaactcttagaattaacAACCAACTTTAGCAGTGtagtaggatacaaaatcaacaca-------cattAGCTTTtgtgtacaccaataatgaacttgATGAGAAgagaattatgaaaacaatatcaTTCATAGTGGCTTCGAGGAAAATGAAACACCTAGGAACTAACCTAACCATGCCAGTGAGggatttttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaactactGTGAAGGAGAGTGAAGATGACATCAGAACATG----GGTGTCTCCTGTTTCTGAGTTGGCAGAACCAAAGAtatcaaaatggtcatact-------------------tccagtGCAGttcaaatcaaaataccaacagcgtACTTAACCAATCTAGAGAAAACAGccataaaattcatatggag-----------ctagaagagaagaaacaatCCTGGACAACAAGAGTGAAGCAGAAGGCACAGCAATACCTGACTTCAAGCTATA-TACAAAGCAGGAGTGAT-AAAATGGCATGGTACCAGAACAAAAACAGATTCATGGATCAACAGAACAGACTTAAGGATACA-AAACCCATCCATACACATTCAACTACAGTATTTGCTCTTTG-CAAAGGAGCCTACAAAATATGTTGGAGGAAAAATATCCTATTCAACAAGTAGTGATGGGAAACTTTATTATT----TGCAGAA-------AATGTACCTTTATGTCTCACCATATACTGAATTAAAAACGAAACtgatcaaagacctaaacattgaaacagaaacattaaatccacaggaagataaaataggaaaaacactT---CACATAGGTttaggaaaggattttctaaac--aacTCTAAT------CACAGAAAAAGCAAGAATGAACAAATAGGATTTATGTCTGATTCAGAAGCTTCTCTATAGCAAAAGA-ATCAATGGTAGAGTGAAGAGGCAACCTACAGAGTGGGGAAAAGTATTGCCACCTgctcct--------cagaggactaatatctaaaatatacaaagaactcaaaaaattaatcT----AGGATTTAAAGATCTAGTCATGAAATGCTCCAAAGAAATGGACaca----tcacagaggaagaaatacaaatggccaacaaatatatgaaaaagtgttcaatatATCTGACTGttagtactgttttaatttgtatttgtctaagattccatcttgctctggaaagaatggcaatcatcaaaCAAATCAAACTGA---CAAATCCTGGAGTGGCCATGGTGAAAAAGGG--ACCCcttcactgttgctggaa-tgtaAGTTAGTACAAGCATTATAGAAATCGGTGTGGAGTTTTCTC----AACTGAAATTATAAATCCCATGTGACCCTGCTGTCCCCCTGCTGGGTATCTTCTCCAGAGAACTTAAGGCATCTTACTGCAGTAATTggtgcatac------caatgtttatagcagcacaactcttAATGGCTAACTCCAGGAAGCAGCCCATATGCCCACCAACAGAAAACTGGATAAAGAAGCTGTGGTATCTATGCATGATGGAATTCTACTCTGCT-----------------------------------CTGGATGCACCTGGAAAGTATAat-gtgagtgaaataaaccaggcaca

a score=32650
s chr3           31775382 1743 + 160039680 TCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATG-----GCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAA-TTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAG------------AGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACA------GGGACAAAATCCTAATTTA--CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC---CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAA--TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAAC----TTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCAT-CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCA-AACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattag---ccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaat-tagggaaacaacacccttctcaatagtcac-----aaataat--------ataaaataccttggcgtg--------actctaactaaggaagt----gaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaaga
s HiC_scaffold_1 63894708 1658 + 233722169 TCAACAAATTATAAAAAGCTGAAATCATATCAAGTATCTTTTCTGACCGCAGTGCAATAACACAAGAAAGA-CTTTAAAAACTatacaaata------------------catagaaattaaacaaaatattccAGAATAACCAATagattgaagaagaaattaagaaggaAACTTAAAAAATTCTCAAA--CAAATGAACACGAAAATACAACATACAAAAACTTATAGAATACAGAGATAGTAGACAGAGATAGTAGTACTGCAAGGAAGCTTGTAGCAGTCAATAGCTACAAAAAGAAA---GCACAAGCATCT-CAGACAACTTATCAGCAAACCTCAAGGAACTAGAAAAA---TAAGCCAG---GCTTAAGACTAGTAGAAAGAAAGTAATAATAAAG--------------------ACtagaaaaaatagagac-----aaaaaatcaatgaaacag-----------ttttaaaaaac--ataagattaataACCCCCTAGC--------CTATGAGAaagatggggggggggagaacTCAAATGTAATCAGagtt-gaaataaaaaaggagataatACAATTGAC---------ACACAAGACACAGTCACTAAAGACTTATAAACAATCATATGC-CAACAGATCTT-ACAActtagaagaaatagacaaaatctTTGACATAC-----GTATCTTAAGTGATtcatgaagaaatgagaaacGTGAATGATACTG----------------------AGTTAGTAATAAGGTCTCTCAtcaaagaaaaagccagaaa-aaatgGCTTCATTAC-TAATTTTACCTATCACTTAAAGGAGAACTAATACCAATTC-ACTTAGATtattgcaaaaaattaaaaatgaagaaattctcCCAAACTGATTCTAGGAGGCCAGCATTATTCTGACTCCAAAATCAGATAAGaccattaaaaaaagagagaaaaaagtacaggccAATATTCCTGATAAACATAactgcaaaaatcttcaacacaATATTAGCAAACTGAGTCAAAAGA-------------TTAttcatcatgatcaagtggaattcattc-aaGGAGataagaatggttcaacatacacaaatcaatgtaATATGCCACATCGCACCAATATTATGAAAGATCAAAACCATATAAGCATCTCATTAGACACAGGAAAAGCCCTTGATAAAATTCGATATCCTTTCACA--AAAACTCTGAGCAAATTAGTTACAGAAGGTATGCGTCTGAACACAATAAAGGTCCCACATAACATGCCCCATAGCTAACATCACACTGAATGGACAGAAGCTGAAACCTTTCTCCCAGAAATTTGGATCAGGACAAACATGTCTACTTGCAACATTTCTATTCAACGTAATACAGGAAGGATTAGGCAGCAGAagaattaggcaagagaaagaaatgaaaggcatccaagttaaagagaaaaaagccaaatTGTCActatttccagatgacatga---tatattaaaaaaacct--aaaatttcaCCAT---ACTGttcaa----ataaacaaattcagtaaaattAAAG-ATTCAaaac-aacatacaaaaatcagtagtgttTCTATAAACCAATAGTGAATTAtctaaaaaagaaatctagaaacATAATCTCATTTACAACagctacattaaaaataatgaaacgaaacaaaacacacacacaaaaaaaaaacactctgg--GAAGAAATTTTAGAGAGATATCTAccatgaaaactttaaaattcttatgaaagaaattaaaaaaga

a score=32003
s chr3           31775383 3139 + 160039680 CAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATA--ACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAA-AGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAG---GGCACAGGGACAAAAT--------CCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA-AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTA--------TTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGT--AGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGAT-AGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaa---------taaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattc-atctggaataacaaaaaacctaggatag---caaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagac-actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca-----caggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaa---------------------------aggatcattacctatcctaaatcaaataggggactaa---tatccaacatatataaagaactcaagaaggtggacttcagaaaag--caaataaccccattaaaaaatggggctcagaactgaacaaagaattctcac----ctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacac--tcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca-tagtactaccggaggatccagca----atacctctcctgggcatatatccagaagatgccccaac-gggtaagaaggacacat-gctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaa---cagaggaatggatacagaaaatgt--------ggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa--tggatggacctggagggcatcatcctgagtgaggtaacacattcac
s HiC_scaffold_1 38267508 2944 + 233722169 CAACAGTTGCACAAAATATGAG-----CCCACAT---------GACTACAATGgtatgaaactaaaaattaacagGATGAAACTCAGAACTGTGTATGAATATT----TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAG-AATGCAGGA-GAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaat-taaaggaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAGGagctagaggaaaaaaaaaatcaaa----cataagag------agggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggtttttaaaaacaaataaatattaaaaagacccTTTATTTA--TTATTAGAGTTTggattaaggaaaaaagagaaatgatatagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGG-TGAATTATTTGGCACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATA-------ATGAAACAGGACTTTGGAACCATAATTTAATAATCTCACTGA-AAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaa-tatttcttgaaatcaaagataagaaaatacttg--caaattcACTT-ACGAGGCTAGCATGACCCTGATAAA-AAGGTACATtaggataggaaagaaa-agaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGAATCCTCAACAAAAC---------------ACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGTTA---------TACACAGAAA--------AaccttttcttctaaaatcagaGAGAAGACACGAATG------TTCTCATTTCTATTTCAGAGGAGCAGTGAAAGTCCCTTCCAGAAGAATAAGCATAAAAAATAGGTTAAAAAGCATCTAAAccagaa---agaaagtaaaatggcTCCTATTTGCTGATGTCATCAAA----------------------------------------------------------TCAATGAAGTTGCAGGATA-AAAACTAACATGCAAAATTAAGCAACATTACTACAAACAGACAATGAAGTATTTGAACATTTTGAGCAAGAAA----------ACGACTCTATTGAGTA--cattaagtatttaaaatacttgggaataaattagaaaaatgagcTAAAATATCTCTGTACTCGAG---TAAAACC-----AAaaagtaattaaacagaa---aaataaatagaaagatattcaaCATCCATGAATTAG------------TGTAAAAACATC-AGTATACCCAAAGCAACCTACAG--TCAGTATGATTCCTATTAAAATGCCAGTGTCTGTTCTCatagaaatagtaaaataaatgttaacttttaatataaaatcaCAAAAGACTGTGACCAGCTACAGAAA----Tcttaagca-aaaagaacaaaccTGAAGCCTTCATACTACCCGATTCCCAAATCTGCCACCAAATTATTTTaatcaagacagtgtgacacTTGAAAACATTCAG---AGCAGCACAATAGAACA------ATCAGCTGAGAACAAAGTTACACATTTATGGCCAACAGATCTTCAACACAGTA-CCAAGATCA--CAATAGAAAAAA-----CTTCTTTAATAACAATTGCTGAGAAAACT--------TTAATTCACAGAATGAAACCAGACTCTTATTTTGTACAGTATACAAAAGCCAgcttaaaatagataaaagatttaAGCATAAGAAAGCAAACTACTGGA----AGAAAGCAAATAGAAGAAACAAACCTC-------TTGGCATCCTGCTGGGCGA----CTTTGTAGATGACCCCAAAAGCAGAAATAACAAAAGTAAGAGTGGATCAGTGGGATTACATCACATGAAAATGCTCT------GCACAGAACAGTGACAATTA------------ACTAGCAGAATGGGAGGAAGTATTTGGAGATTGTACATCTGATAAGATCAGCACCTTATCAAAAACATCT------CTAAATGTACccaaaatacatgaagaactc---aAGTTGCTCTATAGCTAAGTATAAATAATCTGGTTTTAAAATGGACAATGGA--TAAATAGATATTTTTTGCAAAGATGAGT--TACAAGTTGACTGACGGGTATATAAAAGTGTGTTCAATACTACTAAGTCTAAGGGGTGTGCACATCAAATCTATAATGAGTCACCATACCACTCTCATAGGCACAGTTactatgaaaaagacaaaagacaataaaagttGATAAGGATATGAAGTAAGAGAAACTCTGTATTCCA---TTGGTGGAGATATAAATTGGTACAACCgtcatggaaaacagtatggatattcttttaaaaatgagaaagtacagcTATCACACAGCTTGGCACCTTATACATTT-----GTCTGTACTCATGGGATATGAAATCAGGATGTTACGGAGATGTCACTCCA--GTGTTCACTGTGATGTTACCTAAGTTAGCT--AAGCTGTGAGT--TCCATCTGAGACTCAAGAGCAAATAAGCCAACAAATAAGATGGGCTATGAAGATATAAGCATACAGTAGAATATTACTCATTT-CTAAGAAGAAGGCATC-------TTCTTGTGCTAACTTGAAGGAACTTGGAGGACATGATGCTAAGTAAAGTAAGCCAGGCAC

a score=12164
s chr3            31775441 597 + 160039680 AGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAA--ACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACT-------AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGG--GCACAGGGACA----AAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAA----------CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGACAAAATGGACAAATTT
s HiC_scaffold_1 121849223 588 + 233722169 AAACtgatttttcatgaaaataaaaacaaa-------tatcagTTAAGTGTTATTGATTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGA------ATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTAT-------ttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaattt

a score=12864
s chr3           31775489 877 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAA------------TTCACCCAAGAGGAGTAG--ACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACA----AAGATAGAGAACTTCAGACCAAT-TTCTCTTATGAATATAGATGCAAAAA
s HiC_scaffold_1 77585700 830 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGT-----ACAGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatca-ggataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGA---CAATTTAAT--ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt-----tttagaggaaaaaa

a score=10826
s chr3            31775570 465 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattcacacatcaggaaaacaga-----------------------------acctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacataaattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=33720
s chr3           31775598 1546 + 160039680 ACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCT-AAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC-CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATT---------------------------------------------------------------------------AATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAG--GTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAA-----CATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAA----AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagat
s HiC_scaffold_1 44540947 1570 + 233722169 ACCGGCGGGACCCAGTGCAAACAGTCCTGCAAGGGAGGTTTACAGCTGTGCACACCACATGGGAAAGGCAC-AGGGAGCCCGCATAAGTGACCCGATGGTGTTTTTCGAGGGGCCTGGAAAAACAagaaatccaaat----ccaaagctaggacaaggaggaaaattataaagatcgggacagaaatcaatgcaattgagattttttaaaactac----agagTCAACGAATCAAACAGCTGCTTCTTGAGAAGAATAAACCGAAGAGACAAACGCTTAGCCAGCCTTACCCAAAAACGTAAG---AAAAGACCAATCAGTGAacttagaaattaaaaaggcaaaatcaaaaaAGACACCactgaaattcagattattagtaactactt----GAAAACCTGTACACCAATAAATTGGAGGatccagaagaaatggagagattcctaaATACATGAGAATTACCAAAACAgaagtaagaaaatataaaaatcttgaaTAGGCCAATAACAGGTAGTGAAATTGAAgcaataattttgttttggaattctatattatcatttttatccttttttcattttaagatttaaaaaaattgaaacaataataaaaaaaacctaccaaGTAAGAAAAGCCTAGGACCCAATGAATTCACCAGTGAATTCTACAGAGACTTCAGGAAAGATCTAACAGCCACatgcctcaaactcttcaatgacactgaaagggaagcagtaccc---CCAATGTCATTCCTGGAACAAGCGTTcacctgattccaaaaccagacaaacagCCAAGCACAAAAGAGAACTACGGACCGATCTCTTatatgaacatagaag-aaaagtTCTCaggaaaatactggcaaacagagcACAACAAGTCATCATCAGAAAGTCGTCACACATCA-GACCAAGTAGGCGCCATCTCAGGG---------TGGTTTGATGTATGCATTTAAATCAATAGATGTCATTCaccacagaaacagaaacaaggatgAGAATCACATCAGCATCTCAGCAGGTGCAGAGAAAGCCTTTGGCAAAGTCCAAAGTCTATTCATGAAAAAACCtagaagaaaacagatataaaagggctttatctcaatctgat-agagccatctatgacaaaccttaTGCCTACATTATATTAAAAGGTGAGagatt--------tctctctaaaatca-ggagtaGA----------CACTCTCACCACTCCTGTTTGACATAGCACTCAAAGCATTAGCCAGATCagtcaggaaaaggaaagaaataaaaggggta-ggATAGGAAAGGGGTAAGTTAGACCATCACCATCTGCAGATGGTCTGATTCTCTATAAAGAAGGGCC--AAAATGCCACCAAAA-----CTGGTACAGTTAACCAGC-TCAGTAGTGTAGGAGGATTCAAAATGAATACACA-AAACCAGTAGTGTTCCTGTACCTCAACAATGAACTTACTGAGAAGGAAG-TGGGAACCCAATACCATTTCCAATAGCgata---aaaattaaacaca--ggaattaacctaaccaagagaGTGAAAGATCTccaccatgacaactacagtacCCTGAAAAGGGAAATCAAGGAGAATATCAGGAAGTGGGGAGAT

a score=15814
s chr3            31775625 864 + 160039680 TAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGA---AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCA--------TATCACCTAAAGAAATAGAAGTACTTATTAA--TAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAAC------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGC--------TAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAA
s HiC_scaffold_1 187840076 856 + 233722169 TGAGGAGAAAATTTATAGCCATGAATGACTTCATCACAAAAACAGAGTAAGCCCAAATAGATATTTTAACCACACACCTCAAAGTCTGAGAAAAGCAAGAA-TGATTCCAAGTAATAGCCAGTACAagcaagaaaattataaaaaatgggagcaagaaaatcaatgaaattgagacaa-agtaattaaatgaagaattaatcatg-gaaatgttcatt-tttgaaggaataaatgaaatagaaaaatcctTAGGCAGTTTATCCATA----------AAAAAGTCCAAataaatgcaattagaaataaaaatgatgaaatcatAGCGAACACtgccaaaatgaaaaagattatt-gACTATTTTACATA--TCTGGATGCAATTAATTGGAGATTTCAGAGTTAAATGGATACactcctagatacatatgaattctcaaaactgaaccaaga---ag------atttaaaaacactCAATATTCAGTAATAGATAATAAAATGGAGGCAGTAATAAAAATACCCTACAAACTAAGAAAACTCTAGGTCTGTAttcattcactgatgaattctcaAAACACTTCTGGTCAAATCTAACACCTATGTATTTCAAGATgcttagtgaaattgaaaaggaaggggTACTCCCAAAGTCCTTCCTGGAAGTTATCAGTACCTcgatttcaaaaccagacaaggacccagtggggggaaaaaaaaagaactgtgtaTCAACTATTTTAATGTAGACAGATGAAAAATTCCTCAAGAAGATACTGGCAATTAGGGCAACCGATC----------ACCAAAGAGATCATACATCTCGACCAAACAGGCTTTATCCCAGGGCCTTGATGATGGTTCAATATAAGCAAATCAGTAAGTGTGA

a score=59513
s chr3            31775669 2398 + 160039680 GAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTT-CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAAT-AGAAGTAGA-AGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT---AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcc-----cactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatca-aggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaa-taaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacct--ctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgac------------aagggag---------------ctaaaaccatccag------------------------tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaag----atcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaa-agacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcat--tacctatcctaaatcaaataggggactaatatccaacatatata--aagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac
s HiC_scaffold_1 120882408 2349 + 233722169 gaataagcccaaataaataacctagcgATGAACCCTAtaatcctagaaaaacaaaaacaatccagACCCAGAGCTAGtccaaggaaggaaattatacagatcagagtggaaatcaatgaaattgagacaaaaattac-----aaagaattaatgaatcaa--agttagttctttgaaagaataaacaaaatagacaaaac---agccaatataatgaaaaagga--gggaaaaggcctacatcaatgcaattagaaatgaaaaagatgaaatcacaacagacactgcCAAGATTAAAAAGATTATTAACTACTT-TGCAAAA--CTGTATGCCAATTAACTGGAGAATTCAGAAGATATGGAtagattcctaaatacatatgagTTATCAAAACAGAGCCCAGATTTAA---AAactctgaataatccaataatagacaatgaaattgaaaca-gtaataaaaacttaccaactaagaaaagcccaagtctgGATGGATGGACTGCTGAATTTCTACAAAAATTTCAGAGAAGATCTAATACCAATGCTCCTCacgctctttaatgaaattaaaagtagaGAAGCACTC---CCAAATCATTCCTGGAATACAGAATTAACATGACTCCAACATCATACAAGgactcaactaaaaaaaagaactatagaacaatttctttaatgaatatagacgtaaaaatcttcaacaagaaACTGGCAAACTGAATGTAACACATCACTGAGAAGATCATTTATCATGACCA----------------------------TAGTTTAACatactcaaataaataaatgtaacatatcacataaacagaagcaagagcAAAACTCATATGATCATCCCAATAGATGCATAGAAAATCTTTGACAAAATTCATTATCCTTTCATGATTGAAAACACTgcagaaa-ataggtatagaagaaCCTTATCTTAac-tgataaaagctatttatgacaaacctactgccaGAATCCTATCAAATGGGGAAAAATTGAAACCTTtctctctaaaattaggaacaaaac-aGTCTGCTATGAGCACTATCAGCATTCCTGTTCAGCATAGTCCTTAAAACATTAGcaagaacaattaggcaagaaaaaagaattacaagggatatgtataggaaaagaagaagccaaattataattatttgtaggTGACATGTTTCTCCTCATAAAAGATCTCAGAAACTCaacaaaag-actcctagaatgaATAATCAAATTTACAGATACAGTAGGATACAAAACTCAACACgaaaaaaccaatagcattcctctacactaatAACAAACCCACTGagtaagaaattaggaaacaaataCCACTCATGAAGacaccaagaaaaaataaatacttagg-----------ctaaagaagtgaaagacctctacaatgaaaaatacagtgctctgaa-aaaggaatCAAAG-GGACATCAGAAGATGGAAAAGTATCACCTGTACCTGAATTGGTAGACCCCGTG-TACCAAAATGGCTATATTTCCAAAATCGTTTTATAGATTTAACACACTTCCAATT-AAATACTAACATGCTTCttcaaaggaat-gaaaaagtaatcctaaaatttatatagaaccaGAAGAGCCCTAGAATGGCAAAAGCAGTCTTGAGTAACAAGAGCATATAGCAGGAGACATTGCAATCCTGGACTTCATGTTATAGTACAAAATAACAGCGAGAGAAACAGCTTGGTATTAGCCTCCA-ACAGGCATGATGATCACTGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGCTAGGGGAAATATAGccattcaataaataaattct----------gttatCCATATGCAGAATATTGAATCCAAATCTGTATCTCTTTCCAtgtactaaacaaaaataaaaatggatcaaagaactaaatgctaaaacagaaacacttaacccGCTACAAGATAAAATGTGTAAAACCCCTGAAGTCATAGGTGTATG------------AAACAGAACTGCAA----TTATACAATAAATATtaccaagaatcaataaatgtgacCGTATCAAA--------TTTCTGCAGAGCAAACAGACA--ATCagtagaatgaaaagacaacttatagaatggggaaaatttttgctagctattct---tcagacagaggattaatatctagaatgtataataaagaataaaaaatgagatccaccataaaataaaagacccaat--aaaaGTGAGCAAATAAAGTGAATACACG--TTTCATGTAAATA----CAAATGGctagtaaatacatgaagaaatgtttaacatgACTGACtactaaag------aaattaaaacaac

a score=18143
s chr3           31775789 761 + 160039680 GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCA---AGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1 95894463 736 + 233722169 gtgaaactaaaaaaaagta--caaaaaattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACC-------ACATTCAAAAGAAACgattattaaaaaa--caaattcatacaataaggaatgaaaagggtgaaatcactacagattctgtggaaatttagaagatcaccaatacttattttgaaaacttttacttgcataaaataaaaagcatagaaGAAACAGATAGATTTctggaaacatg--aattaccaatgCTGAATCAAGGACATATAAATTGTTAGAGCAACACAAtgtcaattaatgaaattgaa-caataattaaaaacttactgacTTGTTAAAGCCTGGGACATGATAGATTAACAGCtgaattccaaaagaaatttagaaaatatttaacatttggtCTTCTtcaaatctttaatgaaattgaaagagaatcaatgCTTTCTAAGGCATTTATGGGTGGAAGTAATACAATggtaacaaaaccagagaaagatccaaccaaaaaagagaaaaacatgccAATATCTCTAATGCACAGAGAGGCAAAAATCCTTA-TAAAATGCTAGCAAGCAGAAATCATCTAGAA--GTTTAGAgca---------catgaccaagtgggattcgtgCCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGTACTATACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=17494
s chr3           31775792 758 + 160039680 GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATA----------TTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1 95901303 750 + 233722169 gaaactaagaaaatagtacaaataattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACCAC--AttcaactttatcaagaaaagataattaaaaaacaaattcatataataaggaatgaaaagggtgaaatcactacagattctgtggaaattcagaagatcaccaatacctattttgaaaatttttagttgcataaaataaaaagcatggaAGAAACAGATGGATTTCTGGAAACCTG--AATTACCAATGCTGAATCAAGGATATATAAAAGCTTAGAGCAACACAAtgtcaattaatgaaattaaag-aataattaaaaacttactgacTTGTTAAAGCCTGGGATAtgatagattcacagctgaattctataagaaatttggaaaatatttaacaattggTATTCTccaaatctttaatgaaattgaaagagaataaatgCTTTCTAAAGCATTTCTGGATGCAAGTAATACaatgataacaaaaccagagaaagatccaaccaaaa-agagaaaaacatgccAATATGTCTAATGCACCGAGAGGCAAACATCCTTTATAAAATGCTAGCAAGCAGAAATCA-GAATATCATCTAGAAGTTTGGAGca---------catgaccaagagggattcatgcCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGCACTACACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=10967
s chr3           31775827 671 + 160039680 GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAA-ATGGACAAATTTCTGGACAGATACCAGGTACCAAAG-----------------------TTGAAT----CAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAA-TAATCT--------CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA----AGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT-GAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATA
s HiC_scaffold_1 95326533 669 + 233722169 gaagaactggttctttgaaaaaat-------------acgCTGTTATC-AAACTTACcagtagaaacagaaaagagactcagatgaaaacaattagaaataaaaacggCAA------ACCAAAACTCTACTGAATCCAGAACATAGTCA----CATCtgtgaaaaattatattccagCAAAAGGTAAAACcttaaaaaatatggaaagatcTTTATATTTGTACAAATTAGCAAAGCTTAGACAATAAGACAGAAAATTTTGAATAACGCAAAATTAAGTAGctaaattgaagaagta-ataaaactaaaactaaaaaatgtttttaaaaactaacctAGAGAAAGTCCAGCTAAGAA--TCACAGGGCTTGATGAATATATTTCTGAATCCTACAAAAGCTTTATAGATATTAGTTATATCAACATATCTCTTCAAATTGTTCCATGAAGTTGAAA----------------CCATGCACTTTGTAGAAGCCAGCATCTGTCTGATCCTGATACTTAACAATGAccccacaaaaaaggaaaactatattcCAGTCTCCTTACTGAACATGAATGCAAAAATCCTAGAAAATATATTAGCTAACAGAATGAAACACATCATCAAAAACGTCATAGGTCAAGACTAAGAAGGTTTCATGCCAGAGTTGCCAGGATGAGTCAGCATATAAAAA-ccacaaatgtaatacaccaca

a score=64046
s chr3            31775848 2665 + 160039680 AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAA------TAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATAT-GAAAATCCATCAATGTAATC----CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaact--aaggaagtgaaagatctgtatgataaaaacttcaaat-ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaac-tcaattcttcaacgaattagaaggagca-----------------------atttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcga-caagggagctaaaac----catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatggg---acctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcat-----tacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccatt--aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctgg-cggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1 101526179 2590 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaagaa----------atgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggta--taataaaaaaaataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaaccagacaaaga---------------aaaCTGAATGCCAATTTCCTCAAAGAATGTAGATG-GAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaaa-ataggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACCTAGAACAGTCAGGCAAgtgaaagtaataaaaagaatgtgtataggaaaggaagaagtcaaattgttCTTATCTGCAGATGACAGGATCCTCTATATAGACTACCCAAGAAATTCCACCAAAAGTCTCCTACA----ATAACCAAATTTAGAAATGTATCAGAATACAAAATTAgcacaaa-aaatcaataacattcctgtacatcaataatgaattcactgagaaagaaattaggaaagtaACAC------TAAtaacatgaagaaaaattaaatatctaggaattaacctaactcCCCAAAAGTGGAAGATCTCTACT-TGAAAACTaccagtactctgaaaaaggagatcaaagagaacatcagaaaatggaaagatatttcctgTTCCTGTATAGGCAAAACTAATAGTGTCAAATGTGCACTTTCTTCAAagctgatatatagatttaatataatcctaataaaaatatcaatatgtatccctcacagaactagaggaaaaaaaaaatcttaaaattcagaaaacaatcctaaattcatatggaaccagcaGAGACTccgaatagcaaaagcaatcctgggcagcaagaacaaagca-------ggaggcttACAACACTCACCTTCAAGTTACATTaca-agctacagtgataaaaacagcaaggttttggcacaaaaacagacatgtagatCACTGGAACCCACTAGAGTGTATGAAGACAACTACAAGCACA-ATTGCTATTTGAGCTTTGACCAATGGGAAGAAAACATAACATTCTTTggaggaaagataacctctttagcACATGGTACTGAGAAAACCGGCAAT--CCATATGCAAAGCTG------gacctatatctttcaccatgtactaaactgaaattAAAGTAGATCAAag-gctaaatattaaaacagaagcccTAAACCTACTGGAATATacaatagataaaactcttgaagtcattgttgtaggcaaggactttttgAATAGAACACCAGTTTCACAATAAATAACATCAAGagtcaacaaatgagattattatatcaaataaaaaagt-------aagcaa---------CCAACAAG------AGACAACGTACAgtatgggaaaatttttttttgctagctattcc---tcagacagaggacaaaTAT-CAATA-ATATGAaggactcaaaaaaatcagactccccaaaataaaagatcaaattaaaaaaaatgggaaaCCAAAATAAACAGACACTTCTTA---GAAGTATA---AGTGgccaaaaaatacatgaaaaaaaagttcaacatctctGACCACTAGAGGAATGCAAATCCAAGCTATACTAAGAtcctatcttactccagaaagaacggcaatcaccaagaaatcaaacaataacaaatgctggtggggctg-agTGAAAAAGGAGTCCTTTAACATTGCTGGTGGAAACATGAACTAATACATCCCTTATTGAAATcactatggaaaatatttttaaaaattaagaatagtaATTCTATTTGATCCAGGTAtttcccttctaagtatcttcttaAAAGA----------gctaaaaacatcatat-----------tttttAGCAGCAGAATTCATAATAGCTATTCTTAGGAAGCAGACTATGTATCCATGAATGgatgaagggacaaagaaaatgtatt---tttacaaagTGGAATAATATTCAactttaaagaaggataaatttgagacatttgtaggaaaatggatacgcTTA------Agcgtgttaagtgaaataa

a score=29085
s chr3           31775859 2652 + 160039680 TAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAG--ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCA-AGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTA-TTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTC-CAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA------------------GGTTTTGGAAA----------GATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGC-AAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaag-aggaagtcaaa-atatcactttttgcagatgatatga------------------------------------tagtatatataag----------tgaccct----------------------aaaaat-------------------------------tctaccagagaactcctaa---acctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaaca-----------------------------------------------------------------------------------------------------------------------------------------------------------cccttctcaatagtcacaaataatataaaat---------------------------accttggcgtgactctaactaaggaagtgaaagatctgtatgataaaa---acttcaaat----ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaa---cattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgc--aaattcatctggaataacaaaaaacctaggatagcaaa--------aactcttctcaaggataaaagaacctctggtggaatcaccatgc----------------ctgccctaaa--------------------------------------------------------------------------------------------------------------gctttactac-------------------------------agagcaattgtga---------taaaaactgcatggtactggtatagagacagac-----------------------------aagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagca----ttttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaa-attgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaata------accccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaat-------gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatg----------ctggcgtggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaa---atcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggta-agaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggt
s HiC_scaffold_1 72102898 3102 + 233722169 taaaaaaattcttattcaAACTcacaaaaagg---agaggaaagaaccATATCAACTAA-TCAgatgtgaaaaagaaattaaatcacaACATATACCCCAGGTGTTCAGAGCTGTATCA----------CAATATG----------------------ATCTAGAAAATATAGACAGATTTTTATACTCATG--AattaacaaaactaaacaaaaaggatatttaaacatttgaaaattccTGTAACAGCCTGTGATTTTTGAGATCTCAGTCAAGGATCTGCTAACTCAAAATATCCCAGTACCTGATGGAGTCACTGCCGAATTTTACAAAAACTTCAAAGATAATACCTCTACGTTTCT---CCAACTCTTTTGGAAAATTGAAATGAAAGGAGGTCTGCCAAACTCCATCTTGGAAACTACCATTATGCTAAtagcaaactcagagaaagaaTTAACTAC--CAGAAAACTATAGGCCGATTTCTTTAATAATCATGGAAGTAAAAATGTTCTACAAGATATTGACAAATAAGATATAACAAATCATGAAAAAGTTCATATATCATAACAAAGTTGGCTTTGTTCTCAGGGa---aaggatggctcaacatacacaaacctatgaatgtaatacatcacat-aacagaatcaaaaataaaaatcac---attatatcAATAGa--cacaaaaagcatttgataagacCCAACATCTGTTTATGATCAGTGGCTCAAGTCCCTGCCTGATTTTACAAACTCTGAAAACAGTAGGCACAGAAGTATGTTATCTTAATTGTATAAAATGCACTCATGGTAAAACTAATG--CAGAATACTACTAAATTGGGAAAACCTGAAAGCATTTGCTGTGATATCAGGAGCAAAGACAGGCTGTCAGCTATCACCTTCCCTATTCAATTTAGTACTCTAAACTTCAGCCAGAGAAACtaggtaagagaaagaaaaaaatgtg-tatacacaggaaaggaaaaaagtcaaatatatatttacttaagaatcaaatagggctggggatttagctcagcagcataaatgtctgcctggcaaatgtgaggttgtgagtttgattcccagtaccagaaaaaaagaaaaaaaaaatcaaacaattccTAACATAGGACAACCAATAATCTACCAAAACATTACTAATATTCGTgttaagaaaaagaggaaaaatattagcaaataaa------------aaatcaataatgtctCTCCATGCCAACTCCAACCACTgcgaaaaataatttaagaaaatatcactTACATAAGCTTCAAAGAAGTACATAACCGggggtggtggctcacacctgtaatcccagcactcgggaggccgaggcaggaggatcattgcaagttcaagaccagcctgggctacacagtgagctcaaggcaagcctgaactgcacagcgagatcctttctcaaaaagaaaaaaaacaaaaaaagaaaagaaaaaaggaaaaaaattacataacctcagaattaacctaaccaagaaaaagaaaagtgcatACCAGAATATCTACATTAAACAGTAttgtgaacaacaacaacaacaa------caaaaaat-gaaagacatctcTTATTTCTGGATAGTTAGAATTAATAGCATTTTCAAAATGACCATTATCCCAAaattgatatatagatttaatgtagtccaaattaaaatatcaacagtattcctcacagaactagaaata-----tTGCTGAAATTTACATGGAATCA-GAAAAGCCACAAAGAACAAATCAGGAGGCACCCTGATCGTGGATTTCAAGACATTTTACAAAACTACAATGTTAAAAGCATCCTATTACTACCACAAAATAGACATGCACATGAATGGAATGGAATAAAGGAGACAGAAAGGTCAAGTAAATGAGAATTAGAGGGAAAAGATGGGAAAATGAGAgaagaataagaaaacagaaacaaggcTTTATGAATAAGGAGAAGAGGAGGGAttaaagagagaggagaagaatgGAGaataaagaatcaagaaatatcatgtacaggtgc--aaacAGCCTGTGAGTAATGTGatcattattatttctaaattaaaccaataaacttaattttaaaaaaaagaaagttatctaGGGACATTCAGctatctgatttttgacaaagggtccaaaA-TATACACTAGAAAAGTGATAGTAGTATCTTTTAACAAGtcgtgctggaaaaactgtttatCCCAATGCAGGAGATTGAATCTAGAGCCATATCTCTCAGGGTGCACTAccat-aaatcaaaatgaatcaaagatttagatattaaaggagaaacacttcatctgctagaagataaaacaaGCTAAAATCTT---GACATAAGCATAGCTAAGGACTTTCTGAACTGAATTCCAATTGCCCAAGAAACATTATAATGTATCAACAAGAGAGATTATGTAAAA-TTAAGAGTTTCTGCACAGCTAAGAAAA----CAACTGAGTAAGGAGACAATTGCCAATATGGAGAAAAGCTGCTAGGCACTCCTA----GGACAGAGAACTAATAACTgaaatgtataaagaactgaaaa--------cttaGATGTGTAAACATTTAAGACACAATCAAAATATTTGTTACTGAAATGAAtggatacttctcaa--aagaaatgc--aattcc--agaaatatatgaaaaaataaagccaacACAAGATTTTTgg-ctttagagaaatgcaaatctaaACAATACTAAGATTCCATTTAACACCTGGAAGAATGGCTGGCATCAAgtactcagaaaaaagaaaaagaaaaattaatataacacTAATGAGGCTGCAAGGAAAAGAATTCTAAATTATTGGCAGGAATGTAAACAAGTACAATCATTATAATAACCATCAGTATGAGGAGtccttaaaatagtaaaaatgacaATTCCATTTTATACAGTTATTTCTCT-CTAGGTTTCTTCCCACAATGGACTTCATATTGTATTGATATGTATATGCTA----ATATTTATATCAACACCACTCATAATTGGTACATCTTGAAACTGCCATGTATACCCATCAGCAGATGCAT--ATATAAAGAATGTATCATGTATAAACActgaagtactactcagtcataagcacggatatatttgagtcatttgtaggaaaacaaatCTATCATAAACCCATAATACTAACTGAAAT

a score=59450
s chr3           31775861 2783 + 160039680 GATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAG-----------TACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAA---------------------------------------GGTACTCTACCC--------AAC---------TCATTTT-------ATGAAGCCACT-----------------------------------------ATTATTCTGATACCTAAACCACAGAAAGACCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAA-TCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAA-GACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatccca-ctaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaa--agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaac---ttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac-cgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct--------------aagatcaaaacttcaggtgacagcagatgctggcgtggatgt-ggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacg---ggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcattgataagtggatattagccccaaatctaggatacccaagatataagatacaatttgctaaacacatgaaactcaagaagaatgaagactgaagtg
s HiC_scaffold_1 64169318 2819 + 233722169 GACAAATCTCTAACTgatcttaccaaaaaagaaaagaa--aaggccaaATAAATtcaattacaaatataaaaggcaaaatcacaataaACTTTGCTAAAAGTTAGA---TTGTTAGTAACTTCTCCGAGAACCTGTTCTCTAAAGAAacggagaattcagaagaaaca-aCAGACGCCTACTTTGGTATGAATGACCAAAGCTGAtgcaagaagatataaaaatcatgaATAATCC---ATTAGATAgtgagatgaaagaagaattattttcttcttttttaacctttcaactaagaaaagcccaggtcctgatggattcactgatgaattc------------aggAAAGTTCTACTACTACCAttcctcaaactatttaatgaaattgaaaggaaataagTACACCCTATAAATGAGGTGTATATACAATGGAGGAATACTCTTCTCTAAAGAACAACAGGTTAcagccatttctaggaaaatggatgcactttcagaccataatattaagttaaGTAAATCAGATGGTTGACATTGCCAtcatttcaaaatcagaaaacaacccaaccaaaaaaagagaactttagcctaaactcttcaatgaacATAGACCAAAAAAGTCTTTAACAATCCACTAGCAAGTATCattcaacaaatcatcaaaaaaatcatACATTGTGCCCAGATAGGATTTATCCCAGGGTAGCAGGGATGATCCAACATAGACAAATGAACAGATGTGATACATCACATTAACAGAAGCAAAGGACAAAAGTCGCATGCACAACTCAATTGAAGCAGAAAATGCCAGTGATAAAAtttaacatccattcatgataaaaactgaagaaa-acaaacataGAAGAACCATATCTCatc-tgataaaagacatttaTGGCAAACCTACTCTCAAGATCATATTAAATATGGAAAAGCTgaagatttttctatttaaattcagAAGCAAGACAAGGATATTAACTACCATCATTATTGTTCAATATAATTCTTGAAACTATAGCCAGGAGAATCATCCCagagaaagtaataaaaaggCGTATGTGTAATTAAGGAATAAGTCAACTTAACATTATTTGGAGACGACATGACCCTCTACAT-AGAAaccccaaaaattccatcaaaagactcctagacataataaccaaattcagtagcatagagggatacaaaattaacacaaa-aactcagtaatattccTGCACCCCAATGataaactcattgagaaagaaattagag--ataacacttttcacaatatcattgagaaaaattaaacaca--ggaATTAATACAACTATGGCAGGGAAAGACCCTTATAGCAAAAATTACAGCACTCTAAAAAAGTagagattgaagaagacatcataaaatggaaatacatctaTGGTTCATagataggcagaatcaatatagtcaaaatggtcatactcctgAAACTGTTAAGTAGATTTATTGAAATCTCAATTAAAACACTAATAGCACTCCTCacaaaactacagaaaacaatcctaaaattcatttggaaccagaagagacctagaatagcaaaagcaatcttgggcAATAAAGACAACGCACAGGGCAACACAAT---Ctccttcaagttatactacaaaggtacaatgatgaaaacaaaaca--attaacacaaaaacagaca--tggtTTAATGGCATAGAATATAGGGTGCAGACACAACTCCAGGCACTgtcagctatctgatctttgaccaAAGAGTCAAAAATGGATGCTGGGGGAGAAATAGCCTTTCTAATAATTGGTGATGGTA-AACTGGTATCCATATTGCATAAGATTGAATTTAGATCTGTATCTctcaccacatactaaactaaaataaaaatgtatcaaag--------ataaaactatgaaaacagaaacatttgatGTACTAGacaat----aaaactcttgaagacataggcataggcaagaacTTCCTGAATAGAACCCCAATTTCACAAGAATTAACACTAAGCATCAACAAATTG--CATCATCAGATTAAAAAGCTGCTGTACAAAAAAGGGAACCATCAGCAGAATGAACACACAATCTACAAAACAGGAAA-----ATTTACTATTCT-------TCAGAGGACTAACATCTGGAATACACAAAGCAATCAA-AAATTAGATCCC---aatataaaagacccaatcaCAAAATGGG-----TAACTAAATAGACACtccaca---gaagaaaatacaaatggccagtaaatacaCAAAAAGACGTTCAACATttctgatcattagagaaatgcaaattaagacaacac--agATTCtgccttactccagaaagaatagctttcatcaaaaaaaaaaaaaaaaaaaaacactagataACAAATGCAGCTGCAGCTGCAGGGGGGAAAGGAtcacttcttcattgttggtgggaatgtaaactagtacaatcattgTAAAAATCTGTATGGAGTttcttcaaaaaactgaaacaaaattctaAT---TGGTCCAGCTATTgcctttctaggtatctttctaaaagagttaaagacgttatattacagtgacacatgcataacTATGTTTGTAGTAGCACACTTCAAAATATCTCAGTCTTGGGAGTAAATTAGGCATTCATCAGCAGATGTGTGAGTAAAGATAGTATTGTATTTATTCATAATGAATTATTTCACTGCCATAAGGAAGAATAAACTTACatcatttatagggaaatggatacaacttgaat---tTATGTTAGgaggaataaatc--------aga----cacacaagttgaaatcatgcat-------tgtttctcttatatat-gaaaacccaaaatataa---acaaagagtaaaataaaagatagacaataagA---AATACTGAGATG

a score=69069
s chr3           31775907 2592 + 160039680 TAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACACTCCCATATCACCTAAAGAAATAGAAGTACTTAT-----TAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT--------AAAGGTTTTGGAAAGATAGGAATT--------------CAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctg-----tatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatct-cccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttac--tacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaaccca--cacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcc-tgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcatt-----acctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggt--ggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggag-aaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcat
s HiC_scaffold_1 32291934 2512 + 233722169 TAATTAATGTAGCtagaaaggaaaaaggtgaaatcacaatggacactgctaaaatccagaaaatcattagGGACTATTTCACAAACATATATGCTGAATAATTGAAGCACTCCAAAGGAATGGAGAGATTCTTAGATACAtgtgaattgccaaaactgaattAAGA-AGACTTAAAAATCTTCAACAGTCCAGTAACAGGCAACGTaattaaagtaataataataataataaactaccAACTAAGAA--GCCCAAGAGCTATAGAATTCACAGCCAAAATCTGTAAAACTTTCAGGGAAGATCTAACACCAGTattcctcaaactttttaatgaaattgagagggaagaAGTACATCCAAAATCATTTTTAGAGGCTAACATTATCTTAATCCCAAAACCAGACAAgcatccaaccaaaaaagagaattacaggccatttTCTCTGGTAAACATAGGTACAAAAATTCTTACCAAGCTATTGGCAAACAGAGTGGGACAAATCATCAAAACGGTCATACACCATGCCCACGTAGGCTTAATCCCagggatgcaaagatggttcaacacatgcaaatcattAAATATGA-----TACAGAAACAAAAGTAAGGacagaaatcacatgatcatctcaatagatacagaaaatgcctttgacaaaatccaacatccattcatgatttaaaaagaaaaacct---aaagaatagaatttgtataaaaatatactatgtctttatctcaatatgataaaagccatatagGACCAACTTACTTCCAGCATCGTATTAACTGGGAAAAAGCTGAAAgccttctctctaaaatcaggaacaagtcaaagatgtccattgtcaccactcCTGTTGAGCATAgtccttgaaacattagccacagcaatcaggcaaaagaaaga----aaagaggtat---------aGGACAAAATCAAtatgtcattatttgcagaggacatgatcTTTTACTTCTAAGACCCCAAGtg-tccaccaaaagactcctggAATTGATAATCAGATTCATCAGTACAGCaggacac---acaaacacaa--aaatcaacagtgaCCCTTTACACTAgtaatgaactcactga-aaagCAGTTAGGAAAACAGTAGCCTTCATGACTGCATCAA-------AAACTACTTAAGTATTAATGTAATTAAGGAAAT------TTTATTgactacaataaaaattacatcagactgaaaaggaaaattatgaaggacatcagaaaatggaaaaatatcccccTGTTCctagataggcagaaccaatataattACAATGGCTAAACTTCTAAAATTGATACACAGATTTAGTGTACTCTCAATGAAAATAGCAATGTCATTTCCCACAGAGCtaaagaaagcaatcctaaaatttatatgggatcagaagagactcagaacagccacagcaatcctgggtaacaaaaaCAATGCAGGTGGCATCACAGTCCCAGAGTTGGGGTTACACTGTATAAAGATACAGCAGTTAAAATGGCGTGGTGCTGCCACAGAAACAGACATGCAGATCAGTGAAGCaacaaagaag---cagaagcaaCTCCAGTCACATACACTGTC---TGATCTTtggcaaaggagccaaacacatgcactggaggaaagatagtctctttagtaaatggtgcaggaaaaatTGGATATCCTCATGCAGAAGACTGAGTCTAGACCCATATATCTCACCgtgcacta-----aaatcaaaatggatcaaagatttaaatgtaaaa-cacaaacacacaatctgctggaaaataaaataggtacaa-cTTTTAAAGCATAGGCATAGACAAGAACTTTCATGAATAGAACCCCATTGGGATGAGAAATAAAACTGAGAATCGACAAGTGAGACTATATCAagtttaaaagtttctgcatagcaaaggaaacaaccaacagagtgaagag---atctacagaatgggaa--gatAATTTTGCCATCTATTCC---TTGGGCAGGGGACTAAGATCAAGAATATATAATGAACTCAGAAAATTtagacccccccccaaataaaagacccaaccaaaaaaatggGCT----ACTGA--AATAGACACTTGTCAGAAgtagtacaaatgaccaataaatgcatgaaaaaatctt----atctctggccatcagagaagtgcaaattagaacaacacag---------------------aGAATTACTATCATCAAA---------------AAATGCTGGCAGGGATGTGGAGAAAAAAGGAATTCTATTACATTGTTactgggaatgtaaactaatacaagcACTCTGGAAATCA---------TTCTTCCAAAAGCTAAAAGTAGTAATTCCTTTTGACTCAGTTGTATCCATCTTAGGTATCTCCCCAGGAAAGTTAAAATCATGTTACGGGGCtccatgcatacccatgttgaaaatagcacaatttacaatagctaaatcttggaaatagcatGTAt-tttatcaacagatgaatggatatgGGAAGTGTGGTGTTTATGTACAACT--GTAATACGCTGCCATGAAGTA----AAACCTCTGGCATTcttaggtaaatgggtgcaacttgagaacataat

a score=20280
s chr3            31775956 936 + 160039680 AGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCA----GCCAAAAAAAGCC-------CAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAA-CTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaa-aaggag-----atcaaggggatacaaattgg---aaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaa
s HiC_scaffold_1 211301050 889 + 233722169 agaaatgcaaaGAATCATAAGA--CTACTCTAAACAGTTATACAATAACAAATCAGATAGTCTAGATGAAatgga----ttcctagaaatata-----taacCTGATTgaatcacaaagaaatagataacCTAAGCAAATCAATAACA-------AGATTgaatctataatttaaaatgtttcataaaataaaacaaagacaaaacatcaGGACCTGATGGGTTCAAGGTTGAGTTCTACCAAAAATGTGCTGAAAAACTAATATT-GATCTTCTGAAGgtcttccaaaaaaattaaacacaaggcTATAGATTCAAGTTCATTTTACAAAGCTAGTATTTCCTTGATAGC-AAGCAAAACAAAGAcactacaaata----aaattataggCCAATAACTCTAAAGAATATAGGTGTGAAAATCCCCAATAAAATACATGTAACTTGAATTTAATGGCACATTAAAAGAATCACTCACTATGAAAAAGTGGAACCTATCCCTGCAGTGTAAGGATGT------------GAATTAATAAATGTGATATTTCATTTTAGCAAAGTACAGGACAAAAACAATATGATCATTTctgtaaatgcagaaaaagcttttgacagaaCTCAATGGATTTTTATGATTAAAGTTCTCAATAAA--------CTAGGT---------------ATAGAAGGAATATCAAGC---CCA--AGCTAACATTATAGTCCCTGGTGAGAAGATGAAAGCTTTTCTTCTGAGGTCAGGATCAAAACAAGA-TGCCCACTCCTACCATTTCCATTCAGTATAGTACTGGGAATACTACC---AACAACTAggcaagaagaaggaggaggaaaaaaaggcatcttaattaggaaaaaataaagaatttaattgTCTTGGTTTGCAGAGAACATGATCTTATGTATAGGAAaccctaaaaactccaccaaaaaa

a score=11832
s chr3           31775975 1386 + 160039680 AGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaag------gctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa--actcttctcaaggataaaagaacctctggtggaatcaccatgcctg
s HiC_scaffold_1 45014870 1011 + 233722169 AGGTATTTTTGTTGAAAATTGTATGCTAATAAATTGGAAAATCGAGACAGAATAGACAAGTTTCTGGACACATACGACCTACCAAAATTGAAC----ATAAAA------ATCTGAATAGATTAATTT---ATAGGTAACTTAAATCAGCAATTATAAGCCTCCCAA-CATAGAAAACTCAGGAC--------TTTAGTATTGAATTTTACCAAAC------------TTTAACCCCAG-CATGTGCAGATTATTGCATAGAattgaaa-agaaatcatttaa---aactTGTACAATGAAGCCAGTATTACCCTGGTGCTAAGACCA------------------------------------------------------------------------AAAACTC----------------AGAGTAAATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTATAGAAGGAT--------------CATGTCTCAGCATAATAAAGGCTACATATGACAACCCA-CAGGCAACATCACCCTGAGTGGAAAAATG--GAAAGCACTTCC-CTCAGCCCGGGAACATGGCGAACGTGTTGTCGCTCACTTCTCTTCCA------TAATATGATGGTAAAAATTTCAGCCAGAACAGTTGGACAAAAAAC----ATGATAGACATACAAATAGGCAAGGATGAAATCAGATTGTGGGTGTGTGCAAATGGTATGATTCTTTACACAGGAAAAGCC-AAGGCTCCGTTAGAAGACGACTGGAATTTATAAA----TGCAGCAGAGCAATAGGACACGGCAGTAGCATTCCGAAGCCAGTGGCTTTTCTGTTCACCGGTAATGAAT-TGCTGAGAAATAAAGCACGAACGTAATCCAATTTGTAGTAGCCACAAAAGG---AGAAATTCTAGGAATAAACTTAACCGAGGAAGTGAAAGGTTTCCACAATGAAAACCATAAAATTCTGAAGAAATAAATTGAAGGAGAC----------------ACTTCTCGTCTTTATGGATTAG------------------AATAGTTAAACTGTCCGTAGCA--CTACAGATTCAGTGTGATCCCCATCAAAATATCGAC---ATTCTTCGTAGAACTAGAAAAAGATCCCTG-AAATTCACATCGAACCACAAAAGGGCTCAAAGAGCCAAAGTAGTCTtggaaaaactaacaaaaaagttGAAGGCATTAAAATACCTG

a score=13563
s chr3            31776065 916 + 160039680 AATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATC---AGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA---ACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacct--tttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagc-tgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataa
s HiC_scaffold_1 159522233 846 + 233722169 aatcagaatataatttac-----atatattcacACATATTGCAAAGAAAT-------CTAATTGCCAATTCTCCAAATAAAGAAAGCTCAGATCCTGATATCTTTGCTGATGAATTTTATCTTCGtgtatttaaagaata---aataccAATCCTTCCCAAACTTTTACAACACATCAAAGAGGAGAGAACATTGTCTAATCTATTTTATAAAGTCAACATTATCCTGAAAtcaaaactagacaaaaaaataacaaa---ataaagctaTGGACTTCAATCCTATGTGACTCTCGGTGTAAAAATACTCAACAAAATAGTAGTAAAGTGAACCTGG---CATATTAAAATAATTACGTATCACAACCATGAGACTTTTATCCTGGAAATGCAGGGTTGATTTAGCACATGAAAATCAATCAGGGTAGTATACTGCATTAataggataaaaagaaaaacaccccaCGCAATCATCTTAGTagactcagaaaaaaaatcagtcaaaatctAACAACT---------------------AGGATGGCTGATTACACCCCA---ACAAACTAGGAAAGAGAAAGGTACACAATAGCCATAGTTCCCACCATACTTAAAAGA------CTGAATGTTTTGCTACTAAGATAAGAAACAAGATGAAGATTCTCTCCTT-TCATCACTTACACTTAACATTGTACGGCAGCTACT-TCTAGTGAAATAAggca--aataacaaaacaa---aatatagattCAAA-----GTAGGTAAAATACC----TTAAGAGATGCCATG--AATCTTTATGAAC-------AAAAATTTCCTAAAGGATTTCTAAAACTAAGAAGCAGGTTTA--GAAGTATCAAGGATAGGAGCTAAACACACAAACGCAAATTCTATTTC-CTACTCACAAAAAAA

a score=32195
s chr3            31776089 2022 + 160039680 AACACTCCC-------ATATCACCTAAAGAAATAGAA----GTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT---GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGA------AGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCA-TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcta-----ccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggg-aaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaat--gggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaaca-aattgggaaaggat-cattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaa
s HiC_scaffold_1 122040657 1912 + 233722169 AACACTTCCCAAGACTAGATcacaaaaagaattagaaaaaggtTATTATTAATAAGG--------AGAATAAATCAGGAATCTAAAATCTCTGGCCAAAGAAAATTCtatcaaatatttgaagaaa---tagaacCAATTCt---caaacttttccaaaatatagactaggaaaaaataagtacatt--ttgATTCTTCCTATGGAACCGGCATTACtatga-aatgaaagcaaaaaaaaaggcaTCATA---ATAAAACTATAGAACAATATTCCTTATGAATATCTGTgggaaaattctcaataaaatact-gcagTCTGAATTTACCAGCATATTGAAAACATGATACAGCTTAAACAAGTGGCATTTATTTTTGGAATTCAATGATGGTACAGCATATGAAAATCAGTCAGTGTAATGTGTCCCATTAacagaatgaaggggaaaaaatcacATGAAGATCTTACTTGAGGCAGAAAAGGCattacacaaaatgaaatactcTCTCATAATCAA--------CAGCATAGGAATTGGAAGAGAATTACCTCGACTTAATAAAATCCATACAT-GCAAAATCACAGCAAACATTACATGCACTGAGCCAGGACTGGAAACTTTTCCTCTaacatcagtaaaaaaaaaaatct--ccagtttttattt--cttttcaatatagtactagaagtttTCAAGAGagcaattag------gaaaaaaataaaaagtaccaaGATTGACAAGGAAATAGACA---------CTTTTATAGATCATACGATCTTACA-------------GAAAATTCTGGCATTTCAAATAATAcagataataaataaaca---------aagtagtAGGATACCAATTCAACACACAAAAACCAGTCGCATttgtaaacaataaaaatgaactacctacaaagaaaattacaagaataatttcatttataatat---------acGTAAGATTCactagcaaaa---gaaataatataatgaaata---gtataatgaaaactacaaa-cattgctgaca-aaattttaaaagacataagTAAATGAGAACACAGCTCATGGTCATGAATC--TAGACTTAATAATCTTAAAACATCAGCATTACCCAAAGCAATGTATAGAGT------------TGTCAAAGTTCCAATGAGGTTttatacagaaacagaaaaactcatactcaaattcatttaaaatttcaagagACCCTGAATagtcaaaacaatcttgaaaaaagACAGAG---CTAGAAGATTCGTATTTCCTGATTTTGAAACTTACTATGAAACTTCAGTAATCAACACAGCAAGGTACT------GACAAAGGCAAGCATATTAATTGAGCAAAACAGA--GCCGAGAAATAAACCTTTATATGTATAGTAACATGATTTTTGACAAGT--GTCAAGAAAATTCAATTG-----AGAAAGCTGTTTTGACAAGAGGTGCTGGGAAAAATGACTACCCactcacaaaagaataaaatcagattCTTGCCTAAtaccatatataaaaatttactcAAAATAGACCAAAGACCTAGATGTCAGacccaaaactataaaatttttagaCGAAAGCATGGGTCCAAAGCTTTACAACACTGGGTTT--GGCAATGATTTTTGAGTACAATCCCTAAGGCACaagcaacaaaggaaaaaaacaaaaaatacagagactca-gaaattttaaaact--tgcacATCTAAAGACAATATCAATAGAGTAAAAGGGCAATGCACgtaattaagaaaatatacataa---atcataCATCTGATGAGGAACCGGCATT-----------GAGAACTCCTTAAAACTCAGTTGCCata---aaacaatccaaataaaATCCTGGACAAGGACTTGCATAGATATTCATCCAAAGAGGACAGACTACTGACCAGAAAGCACggaaaaagatgttcaacattgTTAATCACTAGGGAAACGCAGGGCAAAGCCATAATGAGACACCATAATACACTTATTATGATGGTCACtgttaaaa

a score=24416
s chr3           31776108 1289 + 160039680 AAGAAATAGAAGTACTTATTAATAATCTCCCAGCCA-----AAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAAT---AGAAGTAGAA--------GGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGG-AAAGATAGGAAT-TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctt-tactacagagcaattgtgataaaaa
s HiC_scaffold_1  9839675 1185 + 233722169 agGAGACAGAA---CACATTAAGAAATTCATGGCCATACAACAAAAGTTCCAAAATCAG----GTTCACCACTGAAATCCATAAGGACTGTAGGGAAGATCTGATGCCAAAATGcctcaaacactttaatgaaaattaaagagcAGGAATATTTCAGGAATATTGCCAGATTCATTCTTGGAGGCTAGCATTGCTTTGattccaaaacaagacaaaaactaaactaaaa-ataaatctacaaacgGTTCTCTTTAACGGACTTACATACAGAGATTCTCAAGAAGAT-ATGGCATGTAGAATGAAACACATCCTTTAAAAGATCATACATCTTGGCCAAGTAAGCATCGTCCCAGTGATGTGAAGATAGTTCAACAGATACAAATCAATACATGAAATATGTCACACAAATAGG--TAAGGAccaaaatcacataatcatctcaatgaACCCAGGAAAAG--TTTGACAGAATCCAACATCCATTCCTGACGAGAGTCTTGATGAAATTAGGCATAGCATGACTTTCTCTCAAACA-GATAAAAACTGTTTAAGATAAAATTACTGTCAACATTATCTCAAATGTGGACAAACTAG------CTTTTCTTGTATCAGAAACAAGGCAAGAATGTCTACTGTTATCACATCTGTTTAATACAGTATTCAGAATtgtagccagagcaatcagataaaattaaaaaatcaaaaggacaTATATAGAAAA----GAATCTAAATTATCTTTGTTTGCAAATTACATAATCCTTTacatagaaaagcaaaaagtttCCACCAGAAGTTTTCTAGAGCTAATAATCAGT---------GTAGC-----------------------------------------------------------------AGGAAATTATTAAAGTATCA------TGAATAATAATGCACAA-ATTTAATTATTAGGAATTAActtaacaaaggaagtgaaaaatgT------------CTACAGAGCTTTGAAAATGAAGCACAAACACAGCATTAGAATATGGAAAGATATATCCTGTTCTTGGATAGCCAAGACCAATACTGTCAAAATAGCCACACATCCAAAATGTATGTATAGATTCAataaaattccaatcaaaataccaaaagcattcttcacagaatca-----aactatcctaaaatttaaatggagTAAGAAGAAAcgcagaatagtaaaagcaatcccAGATAACAACAGCAAATCAAGAGGCGTCACAAT-CCTACAGTTCagattatattacaaaactacaaTGATtaaaa

a score=35435
s chr3           31776122 1747 + 160039680 CTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAA-TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGA-----TAGGAATTC------------------------------------------------------------------------------------------------------------------------------AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctc----cttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatc-attacctatcc
s HiC_scaffold_1 55056274 1604 + 233722169 CTTCTAACTAAACTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAAC--TTTAATGAAACTAAAAGGAAGAGAGGACCCA-CAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacga--acaaatcaacaaatcatcaaaaagatt--------------------acatGCCA----------------TGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaacata--atagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTG---ATTACCACACAGGGAGAC-TGAGTCGGCAC-TCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattctaCCAGCTATTC

a score=28019
s chr3           31776128 1945 + 160039680 AATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAG--AAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTT-----GGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagt--------aaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaa-agaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaac---tcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaact---tcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatc-aaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa-actcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacc-cagaaatgaacccacacac-gtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccat--acttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatggg--------acctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaa---ctgaacaaagaattctcacctgaggaataccgaatggcagagaaacacc--tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
s HiC_scaffold_1 56820437 1808 + 233722169 AAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaa-ataggaaaatctcCCTACTTC----TATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaaga----agctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActcactattaaaaaaaaaaaaaactagaagctTTTTCTCCAA----------------------------------TGACTGTTTTAATACAATTTTAGAAGTTCCAGCCTGGTTAACTag-caagaagacaaaacaaaaagacatctaaattagaaataatggaagaaaaattatCTCTATTAGCAAATGATGCAGTTTTACATGTACAAAACTTCAAAGCTTTCACAAGAAACCTA--AGAACTGGTAAATGAATTCAGC-AGTTCACAGGATATAAAGTAAACATGTTAA--AAATCAGCTGTATTACTGTACACTAACAAAGgataatctgaaaaaaataata-tgacaCAAT-TCATTTAGGgtagcatcaaaaagaataaaatactt--------------------aggtgAAAGACTTATGTGATAAAAAACAGGCAAAATTgttgaa-----aaattaaagagaaagtaaataaatggaaaga-catccatgttcatggattggaagattTAATATTGCTAAAATGCTAGTGTTACTAAAGTTAGG-TACTAGTTTAAAGTAttccttattaaaaattttaa---aatgccaatgagaaactgaaaaatccaTCCCAGAATTCATCTGGAATCTCAAAGCACCTAAGCAGACAAagtaatattgaaaaagaaaaacaaa------gagatttcACATTTACTGCCTTCAAAACTGACTGTAAAACTCCAGAAACCAAAACGGGTTGTTATCgggactcacacacaca-------cagtggaataAGATAGGAACCCATAGAAAAGCATTCATGTACTGTACAGTTAACTTACTTTAgataaaaggg-------------------gaaaggaaactATGTCAGCAAATGTTGCTGGGAAAACTGATCAT--TCACCTACAAAACGACAAATTGACCTGTCACCTTACAACACTGCAACAA--TTaattcaaaatagataaaaaaaatctaaatgcaacagataaaactacattttttataataaaataaggtGAGAAAACTTCATGAGTTTGG------------ATT-----------TGGCAATGATTTATTTCCTACGATGTCAAAatcacacaagagaaaaatttactACATCAAACTTAGCAATCTCTGCACATTAAAGGGTGCTATC-ATCAGACTAAACATGCAAccacaaaatagaagaaaatatttgcaaatt----gtcTAGTAAGGGATGAACATCTAGAATGTA----------AAATCGCTAcaactcaaaacaaaagaaaacccaagTTAAAGATGGG---CAGAGtgcttgaatagacatttct----taaaGAAGACAGACTAGAGGTCAGTTATCAATGAGAAGATCCTAGATGTTGCTAATCATTAAGGGAATACAAATCCTGACCACCATGAG

a score=27037
s chr3           31776186 1029 + 160039680 AGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAA-GGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAA-GATAGGAATTCAAGGCC--CATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagatt
s HiC_scaffold_1  2142831  947 + 233722169 agaaatttagagaagatctaacaccaTCACTCttcagactctttaatgaaattgaaagaaaacaatactc--ccCTAGTCATTCC-TAGGACCAAGATTCCCCTGATATCAAATATAGAGAAggatccaatcaaaaaaaaaaa----------------------aaaaaaaaaaaaaaaa-----aaaaaaa-------------aagccacacacCTAT-AGGTCAATT-----TCCtgatgaa-------------catagacacaaagatggttcaacatatgaaagtcaataaatgtaatacaccatatcaacacaACCAAGGGCAAAAACAACATGATCATTTCAGTAGACACAGGAAAAGCATTTGACCAAGtctaacacccattcatgataaaaattctgaagataattggaatagatggtctttttttttcaacCTGATGAAGTCTATCTGtggcaaaccaacagctaacatcatactaaattgtCAGAATCAGAAaactttcactctgaaatcaaggacaagataaagatgtccactgtcatgACTTCAATTTGCTAAATTTCTAgcaatactagccagagtaattaaacaagagaaagaaataaaagggatataggtaggaaatgaagaagttaacttataattatttgtggatgacatgtta--ctctacaAGAAGATTCAAAAACTCTAC---------TCTAGATCTATTAATCAATTTCAGTCATATAGCTGAGAACaaaattaacactcaaaaatcaacaacatTCTTGTAGATAAATAACAAGCTCact--gaaaaaaactaaagaaaccaTACATTTCACAACAG-CATA---AAAATGCAATAGTTAGAaattaatctaatgaaggaagtaaaa------tatattgaaaactacagtactctaaaaccagaaatcaaagaggatatgagaaactgaaacgatatcct-tgttcttgggtaggaagaacaaatatagtgaaagtggacatactttcaaaattattaaacaaact

a score=43615
s chr3            31776186 1892 + 160039680 AGACCTTCAAAGAAGATCTAATTCCAGTTCTGCA-----------CAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATC-----------------ATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaa-----------ctgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagga-gaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcatt--acctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaag---------gtggactt--------------------------------------cagaaaagcaaataa----cccca--------------ttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac-cctgagattcc
s HiC_scaffold_1 159886302 1846 + 233722169 aaaactttaaaggagATCTAGTGcc---tctatatagaagaccttCAAACGctttaatgaaatcaaag-ggAAG-----------CAGTCATTCacagaagcaagcattaccctgattccaaaaccagaaaaggacccaaccaaaaaggaaatctACAGTCCAATTCTTCA-atgaaaatagaagcaaaaatcctcaatactaTATTGGCCAACAGAACATAGCAAGTCATTAAAAAGACCCAGTAGATTTTATAGCAAGTCATCATGACCCAGTAGATTTTATTCCAGGGGTGCCAGAATGGTTCAATATATACAAAT-CAGTAGTGTAATGCTCCATACAACCAGCAGcaggaacaaaaatcacatgatcatctcaacagatgcagaaaaaaccttcaacaaaatccaacatccattcataataaaaagcaTGAAGAAAACAGCTAAAGAAGGCATGtatctcaaactgataaaagccatctatgagaa------agCACACATCCTATTAAATGGAAAGAAGCTAAaatctttccctctaaaattGGGAACAAGATGAGGATGTCTGCTATCACC--ACTCATTCAA-ATAGT-CTCAAAACATTAGTTAGAGCaattaggaaagagaaagaaataaaaggaata-----tggatgggaagaagttaaattattattttttgtagacGACATggtcctctacatagaagaccctaaaaactc-aCTAAAGtgctcctagaattaataaccaaattcagtagtataacaggatacaaagccaacactcaaaagtcaatagcattgctgtacgccaataataaactcaccaaaagaaaaactagagaaataataccttttacaatagcatcaagaaaaatgaaatactcagcaATTAACccaaccaaggaagtgaaagatctctacaatgaagACTTTAGAAACTTGGAAAAGTAGATCAAAGAGGACctaaaaaaat------------------------------------atactgaaaaaaaag---------aaagagctttcaaaaaa------------------aaaa----agaaagagctttca--gaactagagaaaataatccttaaattcatatggaaccagaagagacctagaatagcaaaagcaattctgggcaacaagggcaaagCAA-------GAGCACCACGATCCTGGACTTCAAACTAAACGACAAAGctgcagtgattaaaaaaaaaaaaacccagcatggtatt--taaaaaaaaataaaaatagacttaTGGAACATAATGAAACAACT-----TCAGGCcactca------gctaccttatttttgacaa--------------------agaggaaaaggagcCTTAT-ATCAAAAGGCTCTGGGAAAAGTGGCTACCCACATGATAAGGGTTGAAACTACACCCTTAACtcccaccatgcactaaactaaaattaaaatagatcaaaggtctaaataatagaacagaaacaat----ctgctggaagacaaaaacagataaaattcttgaagacacagacataggcaaagattttctgaacagaGCCCTGGTTacataagaaataataccaaaaatcaacaaatgggatcacatcaag-tTAAAAGCTTCTGAGCAGCAAAGga-------aacacagtgaagagacaacccacagaataggaaaaaattttgcAAGCGAGTCT---CCAGACAAAGGGTTAATGTCTAGAATAtagtaagaatgaaaaaaaaatggtcccggggatttagctcggaggcataagcacctggtatcaaacatacgcacacacacacaaatggacCTCCCCAAACTTAGATTTAatcaaaaaaatgggcatctgagaagaatagaCGCTGctcagataaagaagtataaatgccaaaaaaatat---gaaaaatgttccacattgctggtcattaaagaaatgcaaattaactcAATGCCTGGTGTTCC

a score=39760
s chr3           31776191 2322 + 160039680 TTCAAAGAAGATCTAATTCCA---GTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACC--CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTG-GAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaat-aatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactgg------------tatagagacagacaagta-----------------------------------------------------gaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctg---aacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacac-atgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtac----------------atctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1 71824309 2150 + 233722169 TTTATAGACAATATAATGCTACAGGTTCTA---AAACTctttaacaaaattataaaagatgCAATACTCTCAAATTCACTTCTAGAGACAAATATTATCATGATATCAATACCAGGAAGAGAtctacaaccaaaaaagagatcTACAGGCCAATGCTCCtaatgaacatcaatgcaaaattcctcaataaaatactagc-aaacaaatgcagcaaatcatctgGAAGACTACACACCATGACAATGAAGGATTCATTCCAGAGATACAGGGCTGGTTCAGCATATGCATATTGGTAAATACAAAGAACCATATTAACAGACTCAAGGACAAAATGtaacacgatcatctcaatagatacagaaaaatca-tCACCAAAGACCAAGAttgattcatgataaaaatgctaTGGAACactggaacagatggtctttatctcagtctgataaaagccatctatgacaaaccaacagtcaacaccATACTAAATTTC-AAAGCcagaaagctttcactccaaaactaggcacaaaacaaggacatCCA-TTACAACTGAACTTATTGAAAtggttctggaaactttagcaagaggattgaaacaaaagaaagaaataaaaggaacaaggacAGTAAAGGAAAGggttaaatgatcattatttgtggatgatcTACTTCTCTACATAGAAAATACCCAAAACTATATCACACCATtggtagatttaataaccaaattcagttga-TGACAGTATATAAGGGTAACAATGAAAAATCATTGGTTTTCCAGTGCATAAATAACCAATTAACAGATAGA-AAATTATAGacataacacctttcacaatagcagcCCCTCAAAATGAACTATATAG----Gactcaatctaacaaagtaaaatatttttacattgaaaactt---gTATTTGAAAAATGAGATCAAAGTGGATTTTAGAAAATGG--AGATACCCATTTTTCTTGGGTAGGAAG--TCAGTACAGTGAAAATTGTCAGGCTTCTAAAATTGCTATGCTGTTTtgatgcaattctgatcaaaatatcagtaccatatctcaaagaattatagaaaacaattctaaaatatattcagAACTAAAACAGAC---------CAAAAGCAATGCT-----GTAAAGGTAAATCGGACTGCATCATGATCCCTGACTAAA------ATTACAcaatggtactggcaaaaagaagaagaaaaaggaggaggaggagaaatacaaacaaacaaacaacaacaacaacaaaaaaaaaccaagcaaataaaaaatgcaaCTGAGGACTGAGGATTAATGAAactgattagaagatgtagaaacaactccagacagaGTTAGTCAACATATCTTCAACAAAAGAGCCAAACACgatcactgaaagaaagacagattCTCTAATGAGTGGTGCTGGCAAAACTAGTTTTCCATATTCTGAA-----------GGTTAAAACTT-TCACCTTGCACTCAGCTACAATTTAAGTGGGTCAA----------ATACATACAGAAATCTTACATTTGCTGGAAGATAGAAGAGGTAGAACTCTTTAAAACAGAGGTGtatgcaaagactttatgaaaaaaaaaaaaacaatcacacaaaaaacatcacaaagaattaagaattgagatctcatcttaataaaactgttttacacagcaaaagaaagcaccaacGGGGTGAAGAGACAACTCATGGTGTGTGAAAGAGTT-TTGCTCAGTCTTCTTCACACAGAGGACTAGCATCAAGaatgtaaaatgaatt-----------------------------------ttaaaaag-------cagaact---------------------------------------------cccaaataaat------------------------aaattcagtgcaAAA----------------------------------------------------------------------------ATGTGTACGAGAAATGAGACTTTCACCATTGTTGGTAGGAACacagactagtgcaacca--ctgaaAATCTgcgtagagattcctcaaaaacctaaaactagaaattccatttgatccatcCATGCCACTTCTTGGCACTTTtgctaaaga-------------aataaaagcactaCGCAGATCTATTTTTATAGTAGCATAGTTTGTACtacataaatcttggaaacaacccaaatgaccatCAGTGGGCGAATTTATAAAGAacttgttgagctctttttttttttttttttttgatagtgaagtactactctgc-attaagaaggataaactggagacatttctagtcaaacggatgcaccttgaaaccacacttttaaattagataa

a score=9840
s chr3            31776220 357 + 160039680 CAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACC--ACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT
s HiC_scaffold_1 185532517 317 + 233722169 CACACTATTTC------TGTAAGTAGGAG-----CCTTCCAACTCATTT-acaaagc--------------taaataaacctgACAAAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAACTG--------------GGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATT

a score=7523
s chr3           31776247 259 + 160039680 AGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAG-ACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAA
s HiC_scaffold_1 33701927 246 + 233722169 AGGAACactttcattcttattttataaagccatcattatcctgataccaaagtCA--GAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAATATTA------------GCAAATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATGCCAATAAGTAAATATGAAATGTCACATCAGCAGA

a score=6745
s chr3            31776260 318 + 160039680 AACTCATTTTATGA----AGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTC
s HiC_scaffold_1 159471395 289 + 233722169 AACCCACTATATGAGCATAACCtctatta---------aaaaatgacaaaaacagcactctaaaa-ataaaactgcagggcaatctccctaatgaatttAGACACAAAACACTGCAA-------------AATGGA--CCCAGGATgtattaaaagaatgaaattccaTGAACAAAATGGGTTCCTTCCAGG---------ATAGTTTAATATTAGGAGATCTACTAATATAATTCATCACATCAGCAGATCAAAGGAAGAAAACCATATGGCCATCCGGGTACATAATGAAAAGacatttgttaaaaattcatCATCTTTTC

a score=26953
s chr3           31776262 1514 + 160039680 CTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagg-gactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatacctt-ggcgtgactct--------aactaagga-------agtgaaagatctgtatgataaaaacttcaaatctctgaagaaa---gaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaaccta------ggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtga--taaaaac--tgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaactta-tagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatggga
s HiC_scaffold_1 72209365 1471 + 233722169 CCCATTGTTCAAAGCTAGCTTTACCCAGATACAAAAACTGGCCAAGGAtttaacaaaaattgaaaattgcCAACGAGTTTCTTTAATGAATACAGATCAAGACATCTTCAACCAGACACTCAGAGACAGACTAGAACAAATCATTAAGTAGATCATACATTATGACCAAATGAGCTTCACCTCAGTGAAGCAGAGA--attaaacatacataaatcaatacataaatCATACAACATAAAGAGAAGCAAAGATAAAACTGCCATGGTCATCTCTATTGGTGCAG-TACAGCATATTACAAAATCTGGCATTCATTcaagataaaaaccctgaatCAAATATGTATAGAATCATTTTACCTCCAACTGCTAAAAGCA---CATGAAAAATCCACTCTCAATATC-TAGTAACTAGTAAAACGTTAAAAGCATTCATACTgaaatgaggaaaagagaaaaagttcgTCACACTCACTGCCCTCATTCACTGCAACTCTGGCAACGTTATTCAGAGCTGTCCAGTAAGAGAAAGA----------ATATGTGTAGGAAA----GAAGTCA----ATCCTCATCTGCACATGACATAGAAGACTGGAAAAG---------AAAGCCCACCAGAAGACATTTAGAATt-ccaaacaaattcagcaaagtggcACAATACAACacaaac-----aaaatcaataatgttACTGTACACCAACAATCATTCTAATGAGAAAGAATTCAGGAAAACAACCCTATtc---atagctaaaaaaaa---aaaaaaccttaggaattaatctgaaaaagaaactaaaaagcaGTTTAATGAAAGTATAGTGCTATGAAAATTTTAGTACtataaaaaaaaggaatattgaaGTTGAcgttagaaaatggaaggacatccgCTGATTCTGAATAGGCAGAGTcaaaattgttaaaatggccaCACTATCAAAAATGATATATAGGTTCAatgcaactccaatcaaaataccaacagcattctttACAGCACTAGAAAGGAATAATCCTAAAATTTCATAGGAGGCCCAAAGAATCAAAACAATGCACAACAAAA----TGTGCAAAGACAATA----TTGTTCTGGATT--TCATGTTT----------TATACAACAAAGCAACACTGATTTAAAAACAATGACTCCTACTGACATGAAAACTGCCCTATTCACCAGTAGATTAGAACTGAGGATGCAGAAACCATCCCATGTGTCTTTAGTTATGTGATTTTTGACAAAAG-tctaaaaacaaatgctggaaaaaagacagcctctataagaaatgatgctgaaaaaaatGGTTATCCATATGCAGAATTA-GCTTACC--TCTATGCGTCTCCTGCATTACTAATATTAAA--TAAACATCTTAAAAGACAT-AGGTATAAAAAGCAACCATGGAATATACTAGAAGATATTTTGGTAAAAAA-CTTGAACAT-TAGACATAGGCAATAATATTCTAAATAGAGTCGCAAATGCACAAGAACtaata-caaaaattaacaaatgaaa

a score=13815
s chr3            31776272 420 + 160039680 GAAGCCACTATTATTCT-GATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAA--CATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAA----GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaa
s HiC_scaffold_1 134234716 413 + 233722169 GAAGCTATCATTACTCTTGAttccagaaacagaaaagaacccAGTGACAAAAGCAAACttcaggccaatctctttaataaacacaga----aaaatctaCATAGACATTA--GCAAgcagaatacaacaaatcatttaaaag-----atatattatgaGCAAGTAGGCTTCATTCCAAGGATAATGTGATGGTTCAGTTTATGCAAATCAGTAAAAGTAATACATGACGTAAGCATAAGTAGGGGC-AAAATCACATAGTCATCTCAATTAATGCAGAGAAAGATTTTGACAGTAGCAAACACCCATTCAGAATGAACATct--gaaagaaatagatttaaaaaggaattttatataaatctgataaaaaccacTTATAACTAATCGATGGCCAATATCATAGTAAAtggaaagaggcagaaaaaaa

a score=41949
s chr3            31776276 1576 + 160039680 CCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAG----GCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcacca-----------tgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggt-------------atagagacagacaagtagac------------caatggaatagaa-------ttgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagat----atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaa
s HiC_scaffold_1 232195281 1576 + 233722169 ctagtattACTGTGAttccaaaaccaaagaagaatTCAACCCAAAAAGCAAATTAaaggccaatatccctaatgaatatagacacAAAAGTCTTCAAAAAGACACTGGCAAGGAGAATACAGCAAACCATTAAGAAGACTAT-------GGCCACGTAGGATTCATCCTGGGGATTCAGGGA-GTTGCAGCATACACAAGTCAGTAAGTGTAATACAGCAAAGTAAGGGCGCCAAGGACAAAACCCAGCTGACCACCTCCGTAGATGCAGAACAGGCATCTGACAAAGTCCAAGCCCcgctcatgataaaaacccaagAGAACACTGGACCTGACGGTCAGTCTCTATCTCAAAGGGATGaaa-ccatctgtgacaaaccaacaggtaACATTATATTAGAT-GATCAAAACTGAAAGATtgtattctaaaatcaggaagaagactgggatgtccactatcaccactcctattcaacacagttctggaaacactagccagagcaattaggaaagagaaatgaacaaaaggaatatggataggaaaggaaaaagttaaattatcattgtttgcagattacatgctactctacatagaagaccccaaaaacgcTATCGAAAGACTTTTAGATTAAATAACCAGTT------ACATAACTGGATAGAAAGtgagcactcaaaaatcaacagcatttctgtacacaaatatcaaattcactgag--agaaattaggaaaataatacttATCATAATAGCATTAAAAAGtgt--aatatttaggaatcaatctaacaaaggaaataaatgatcttcatattaaaaattacagtactctgaaaacgGAAATTAACAAGGATATGacaaaatggagagatatccattgctcttgagtaggaagaaccaacatagtgaaaatgatcatactttcaaaattattatacagatttaatacaattccaatcaaaataccactagcatacttc-----cctagagaaaacatttctaaaatttatttag------agaagacctagaataacaaaaacaatt-tgaataacaaaggcaa----ggtagaggCATCACAAAGCCTGACTTCCTGATTTGAAAGTATATTACAGAGTTCACATGATAAAAACAGTACGGtacttgcaaaacaaaacaaaacagaaccgaacaaaaaaacaaacctaagGCTCATTGGAACACAAACAGCTCCAGAAGATGcggaaacaactccaaacacattcagccactt-atctttgac---------aaacatgttcactagaagaaagacagcctctttaataaatggtgctagaaacaCTGAAttgccacatgctgaagactaaaactggatCT-TGTCTTTTGCCAGgcactaaagtaaaatcaaaatgcatcaaagatctacgtattgaaacagaaacactcaacCTCCTGGAAGGGCGActaggcagaactcttgaagcTACTGATTGGTGTAGACAAAGATTTTATG-GCAAACCCCCAATCACACAGGAGCTATCACCATCAATCAATGCCTGGG-CTTCACCAtagtaaaaagcttttgcacagcaagagaaaccaccaa-gtGACGAGACAGC--CCCACAATGTGGGAA

a score=36239
s chr3            31776288 2278 + 160039680 TGATACCTAAACCACAGAA-AGACCCAACAAAGATAGA--GAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT---CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcaga-agatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaa----------------aagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatc-gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaac------------------------------------------------------------------------------------------agcaatggcttgtactgtaaga--------------------------tcaagaattgac------------------------------------------------------------------------------------------------------------------------------------aaatgggacctcatgaaa-----------------ctccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaa---------agaccaccaacaaattgggaaaggat-cattacctatcctaaatcaaataggggactaatatc--------caacatatataaagaactcaagaaggtggacttcagaaaagcaaataacc----------------------------------ccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactacc----ggaggatccagcaatacctctcctgggcatatatccagaagatgc---cccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagcca-----gaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcattgataagtggatattag
s HiC_scaffold_1 107509862 2501 + 233722169 TGATTCTCAAAAGACAtaataagaacaacaaaaacaaacaaaaaacgagACCAATACCTCTAGTGAACATgggtgcaaaaattctcaacaaaatactag-gaAATGAatttaatagtgtatcaaaaaGATCATCCATCATGGTCAAGCTGGTTTCATCCCAGAGGTACAAGGATAACTGAGCACACACAAGTCCAAAAATATAATAGATTACATTAAcagaatgaataataaaaatcactttattatctttatattcAATGCAGGAAAAGCATgcaacaaaattcaacatctcctgatAA-AAAACCCTGAGCAAATTAGGTGTAATAAAATCATGCCTCAACGTG---AAGGCTTTGTATGACAAACTTA-AGCCAACAT---ATTGAATGACgtaaagttgaaaatatttcttgtacTATCAGAAACAAGAGAAGTGTGTATAGTCTCTCTACTTAtgttcaatatagtactagaag---tagcTGGAGCAAttggataataaaa----ataaaaaaaacataaataggaAAGGAGGAACTGAAATCATCCCTCTTTGCAAATGATGTG--AGTTTGTAAACAGAAACCTATGATCTCCACCAATAA-----TAGAACTGATAAAC----TCAGTAGAAAAGCAGTATAAAAAAT-------------TTAGTAGCTTATTGATAT-------GTCAACAGTTTTCTGAGAGAAACGGGAAAGCAAT-CCATTTACACTAgctacaa--aaagtaaaatattt----atgacta-aataaaggaaatgaataaCCTCCATGatgaaaattacataattttgaTGATGG--attgaagacacacacacacaaaagtaaagaTTTCTCATGTTCCTAGATGGATTGAAAGAATATTGATAAAGTGCCcctgctgcaaaaaaaaaaaaaaaaaagaaaaagtttacaaTCTCAATTTAATCCCTAGcaaaataccaatgacattcttcacaaAGCTAGgaaaaacatccta-aaattcatatggaaacacaaaagtTCC-TCATAGCCAAAGC-AGTCTTgagaaaaaaccaacaaaactagAGACATCACAGTACCTGATTCCAAAACATACTACAGAGCCATAGTAACCCCAACAATATGATTCTGGCGTA---AGAGGCATATAGGCCAATGGAACTGAATAGA--GCACAGAAACagaggaac-------------------------caagaaaaaaaaaatcac----tggagaAAGAACAGCCtcttcaacaaatgatgctgggaaaa-----tgaTATC-CATATACAGATTAAAATCTGATCCCTATCTCTTACTCTGTggaaaagtcaactcaaaatgaatcaaagacctataAGAAAGACCTGAA--ACTGAAactc-tagaagaaaatatagggatAACACTTCAAAACAATGGTATAGGTAATGATTTTCTGGATAGAACCCCCAAAACACAGGaaattgatagaattttcagcgtggaagggaaccatctgataggattttggcgtGGCTAAAAAGGGAGATATGAAATAGaagagacctttattttaagaatgtggggagagactctATGACCCTCCCAGGGTCTGGCATTATCTCcaccagacacgtggtgtgggggcatgtGGCTTAGGTTTGgagtggtgcctaaggggcattagtaatgcacaggtagcccattggtattcatttccgcgccacaggtaaattgcctaggggcgggaaaggtgacctcaGGATAGGGcctcttggttctgcctccaaggctt-taccagctacagtgtcccatc--tggggcaaaatcctttcagaaatGAGCAAGAAATTTGGtaatattaaactaaaaaaactacaccaaaaaggaaacaatcaacagagttaacagaaaatgcacacaactggagaaaatatttgtcaattATTCAAATGACAAAAAGTTATCCAGAATATACAGCAATTCAAAATGCAATTATAAAATGGGACAATGAtctgaacagatacttctcaaataaagaaatataaatagccaACAAATACATGACAAAAGGCTCAATATCATTAGCTATCAGAGAAATTCGAATCAAAACTACATAGAGATAACATCTCACCTAAACTAGAATGGctatagttaaaa------atattaacaaat----tcatGATGAAGAAGATAAAGGAATTCttatacattgttggtgggaatgtaaactagtatagcAACTATGGAGAACAG---------TTCTCAAATATCTAAAAGTAGCTTTATCATATAGATGATCCAAATATCTTACTTCTGGATATTTAGCCCAAGGACATAAAATCAGCATAGCAAAGAGACACCTGCACACTTATGTTTATTATGGTACTATTCACAACAGCTAATACTGTATATGGAGTCAGCCTAAttgcccatcagcagatgaac--aTAAAAAATATGTAGT-TTTATGCACAATGAAGTATT-TTCAGCCAT---AatgaatgaaattctgtcatctgCAGCAAAGTAGATTGAACCAGAGATtaatatgttaagtgaaaaaaagcaGACCCAGAAAGACAAGTACTACGTGAGCTGTTTCAtatgtggaagctag

a score=12616
s chr3            31776303 1762 + 160039680 AGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAAT------------ATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTT-GGAAAGATAGGAATTCAAGGCCCATA---CCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacctt--ttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagc-aatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcat--------ggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatc---gtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagt-ggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgt-actgtaagatcaagaattgacaaatgggacctcatg-aaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttca--gaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgagg-aataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaaca
s HiC_scaffold_1 124838658 1529 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaaattt--acaaaataatggcaaatcaaattcagtttaatgttaaa---ataatacatcatgaccaaat-tgCATTAGCTCTGAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAATCTTG--aactttttttctattattataaaCAAAGTAAACATATCAAC--TCTTATTACTCTAATTTAACATCATATTGAAATT-----------CAATaagatgagaaaaaga-ataaaaggcatAGATActgaaaaggaacaaataaa------actATTCAGAGATTACATGATTGCTCATGTA---GACTCTGAA--------------------------------------CGGGAAAATA----CATTAAAgataaa------------------------------------------------------------------------------------------------------------------tctaataaaatatgtgCAATATTTGCATACTAAAACCTAAATATTATaggggaaataaaatatttaaaat------aaaaagaaaaata-catgcacTTGTAAATTGGAAGACTCAATGTTGTTGACATCTAAATTTTTTCCAGGTTGATCTACACAGTCAATATGAATCCAATGAAAATCCCAG--CAGGCCTTTAGTAGAGCCCAATGAACTGATgaaaaaatgtataagaaaaattgaaggaaataCAACTGCTAAAGCAATTTTTAGAAAGAGCAAAA---TTGGAGGACTTATACT-----CACAAGACATTTAC--AAGAGTTATCAGG----AAACCACATACTCAGAGAGTGATGTTATAGTG--AAACAAATGATACAATGATA---AATGGAAAACTCAGAAAC--------------------------------------AGGTCAAAATAATTTCATGGTGGCAGGGTAATCTATTATACAAATGGTACTG---CAGCAGTTTTCTATCCATATGCAACAAAATTTATCTCCATACATAAATTAAAttatacacaaaaattaattgGAAATTGATC-ATGACCTAAATGTTAAACCTGAAAGCTTAAAAATTCTGGAAGAAAACATAGAAGAGAAACCTTGTGACAGTGAG--TTAGGTAATATTTATTAGGCAGAGTA--AAAGATTTACGACtcataaatgaaaaattgttacatggaatttttttcaaaattaaacacttcTTATATTT-----ACACTTTTAAGAAAGtgtaaatacaaaatattaactagatgaaaatattttcaaaatatatgtcaAGTA-AAGACTGCTTTTGAAAATATGTGAAAGACTTTCATATTTCAATTACAAGGAAAAGTAAG-AACCCAATTTAAAACtaagcaatatattttta-aaagaagtttcaTCAAATTCAATATATTACtggaaaaaagcatttgaaacaatGCTCAACAACATTAACAACTAGAGAAATGTATGTTAAAACA

a score=8609
s chr3            31776318 666 + 160039680 AGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGG-----CCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG--CCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccact--ttctccctaccttttcaacatagtacttgaagtattagccagagc---aattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaaca
s HiC_scaffold_1 173578727 609 + 233722169 agacagaatgtagcaaatcagtAGCCCTTAGGAACATAAATATACAAATCCTCTACAAAAGTTTAGCAACCTAAATCTCATGATAAGTAAGAAAAACAATATGTTTTAATGAAGTGGGGCTCGTCCCAGGGGTGCAACTCTGGTTCGGCATTAGAAAATCAAACAAGGC-ACCCACCCTACTAACAGACTAAAGGAGAAA----------------------CTGCAGAAAGATTCTTTAACAAAATGCAAAATCCTTTTTTGATAAGAATTATCAACAAACTAGGAAGTGAAGGGAGCTTCTTGACTTGGGCATAA-------AATC-----CCAGGCAGTGGGATCACCTTGATAGTAA-------------GGACCTACGTCCTTTCCTATGAGGG--------CGGGAGCACACTTGTCATCTCTGACCTCTAGCTGTCGTA-----------AGTCAGAAACTGAAATaggcaaggaaaagaaat-aaaggcatACGGAGtggaaaggaggaaataaagctGCTCTTACTCTTAGGTAATACGATCATTTACACAG--AAACTTCAAAGATCTACACCAAAGCAACTAGGACCGATAAGTAAGTTCAACAGGGTCTCAGGATACAGATTCAGTATAAAAACATCAATTGTGTTTCTCTATACTAGCAGTGAACA

a score=35633
s chr3            31776324 2236 + 160039680 AGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG-CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaa--------------------gcaatccca--------------------------------------------------------------ctaaaa----------------------------tcagggactagac---------aaggctgcccactttctcccta---------------------------ccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggataca-aattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaa-caggctgagaa----agaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaag-gataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaat-tgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatact-tatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaaga----tcaagaattgacaaatgggacctcatgaaactc-caaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatgg-ctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcattgataagtgga
s HiC_scaffold_1 123227521 2203 + 233722169 aaaactacaggacaatttatttaatgaacatagatgcagaaattcTCAATAAGAGTCTGGCAAACAGAGTGCAACAACTCATAAAAAAGATCAGAC-TTAAGACCAAGAAGTCTTTATCCCAGGAATGTATGAGTGGTTCATCATACACAAACCAATACATATAATGCACTACATAAAAAGaggcaacaacaaaaatcac---atcatctcaatagacgaaaaaaaaagtcttcaatataat-------ctgttcatgataaaattctgaaagaaaagagGTATGGAAAGGCCttatc--aatctgataaaagttattTAGTACAGACCTCCTG-CAACATCATGCTCAATGAAGGGAAACTAGCAAGGCCTGGtgctgcatgtctgtaatcccaactctcAGTAGTCTAATGCCCAAGGTTCACCGTACATTCGAGGCCGTGCTGAGTTGCCTTACTTAAAACCATTCTGAACTATGTAGCAGCTCtctgtcaaaaaataaacaaatagggGAAAACTGAAAGCTTGTCCTCAAAAACCAGAAATAAGTCCAATACTGAACTTCTGTCAGTATAGTACTTGAA--ACTACCTACAGCAATCAAGCAAGAGA--------AAAGTGATCcataataggaaaggaaaaaatc--aacTTCCCCTTCCACATA----------------AAGAATAGCCC----AACTCCACATCATGAATCCTAGAACtgataaa----ttcagcaaggtaaTAGGACACCAAATTATGTGAA--AAATCAATAGTGCTTAGATTCACCAATAGTGAGTCcatctgaagaaaacaaaaaatagaaaaacagtacCATGC-AGctagcttcaagaaaaattaaatacttaggaa-----ctaGCAAAGAAAGTGAAAG-CATATGTAACAAAAACT------------GTAAGAGGATTGAAGAGGAcattgaaaaactgaaagataactt-tgttcctggataggcagaaccaatgttTTCAAAGTGTCCATGCTACCAAAAGCAGTGTA-----TTAATACAGTTGCAATAAAAGTACTACCAACATTCTttacagaacttaaaaaa--aaatgtaaaatttatatggaaccagaagagccccagaatagcaaaaaatcaccctaggcaacaaaagcaaagcaagaggtaTAACAACCTTGGATTTTAAACtatattacaaaactacaaaaaataaaaacaacattgtACTGACATGAACACAGACATATgaaccaatggaacagaatagaggatgcagaa---aaatCAGGCACAGTCAACTATCTGATCTTtgagaaaggggccaaa--catgtattGCAGAAAAAATTGCCTCACTACAAAATGTTTCTGGGAAAACTAGCTATACATAATCAGAAGATTG------AATCTATACCATGTCTCT---CACTAGAGTCTA----AAAgggatcaaaaatatttaaatacaa------atactT-AATTTACTGA-GAGATGACTGGTAAAACTCTT---GACATGG--ACAGGTAAAGTCTTTCTGGACAGAATCTCAATTGC-------ATAAGAAATCCCAAAAATCAACCAATGAGA--TTGTCAGTTTTAAAAAGCTGCTGTCCAGTGAAGGAAATACCCAGAAGAATGAAGAGAC--Tctacaga-agggaaaaaatttttgcaagTTACTCCTCAGCCAGACgactaatatctaaaa-atataaagaa--aaaaatgttagaccctaccaaaataaaagaatc-----aaaaagggcaattaaaatg----agaaaattttca---gaagtata---aatggccgaagtatacatgaaaaaaatgtgcaccatctctggccattagTGAACTGCAAATTAAGATaacactgagtttccatcttactccagaaagaatggtttatgatcaggaaatcaaa-aataacaaatactggcaaagctgcagagaagaaggaagccttctacattgttggtggcagtataaattagtacaaccactatgcaAACTCATATGGAACAttctcaaaaatgtaaaaataa-------ggtTGAGCCATTAAGtgtccttctaggtatcttctcaaaaca-----------gttaaagtgatatatgc------atacttgtggcagcacaattcataatagctaaatcttggaagtggcccaTGTGTC---CAACAG----ATGGACAATggaa-----------------aatggagtactactttgtta-taaaaaggaaaaatgtgagtcatttgtaagagAATGGATGCACcgtgagaccataatattaagtaaatca-------tacacacaaacttaaatattgtacattttcttatatgagaa

a score=16648
s chr3           31776338 520 + 160039680 ATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagt
s HiC_scaffold_1 45948648 466 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGA------------------------AAACAGGTAAGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaaaacattagccagagctgTTAGGTAAGtggcagaaataaaaaggatttgaaTAACAAAGGGAGAAGTCAAActattcttattttcaaatgat-tgataat

a score=54527
s chr3            31776344 2165 + 160039680 CTTATGAA-------TATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAA-------GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaa-agaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatga--acccacacacgtatggtcacttgatcttc-gacaagggagctaaaac-catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaa-------ataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga---tgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgag
s HiC_scaffold_1 155859752 2098 + 233722169 CTTATGAGGGGGTTTTATATAGGTTATAACACTCAGTAAGATATGGGGAAACATatttcagcaaatcatcaagaatattatctACCATGAACAAGTAGGATACATTCCATGAGTGTAGGGATAGTTCAACACATACAAATCAATACATTTTATACATCATAT----AAAGCTAAGGACAAaagccatatgatcatctcaatagatgtagcaaaagcatttgacaaaatccaacaccaattcatgataaaaactct------acagaaaattaacacagatggtctttacctcagtctagtaaaagccacctatgagaaaccaatagccaacatcatactgaattgtcaaaaaatgaaagccttcacactaaaatcaagaataagacaagaATATCCACTACCACTACTCCTATTCCATATAGTTCTgggaacattagccagagcaattatacaagagaaata-attaaaggagtaaagataggaaaggaagaagttaaattatta---tttgcagatgacaagatacgctacatagaagatcccaaaaactccacgaAAATTCTTCTCTGTTTAATAACTAGATACAATCATCTA-CTGGGTGcaaagtcaacaatcaaaaatcagtagcattctcaTACACAAGTAACAAAGtccctgagagaaaaattagggaaaacacACTTTTTGTCATAGCACTTAAAAAAGTGAAATGCTTAAGAATCAATCTGAC----AAAGTAAAGGAtctttacactgaaaattacacaACTCTAAGAAATGAGAGAGATAAGGGTATCATAAAATGGAAGCATAGCACTTGCTTTTGTGTAGAAataaccaacatagtgaaaatagcaATACTCCCTAAGTtgttctacagatttaatgcactcccaatcaaaataccattagcatacctcacagaaccagagaaaatattcccaaaatatagttggaactagaagagacctagaataaaaaGATCAATTCTAGACAATAAAGACAAGACAGGGAGAAAacagaatccctgacttgaaattataccacagagtttctgtgataaaa----------------------acagacctgaggatcaaggGAACAGATTATAAAATGCACAGATAACTAACAACAC-----TGAGCAAATGTACTACTGATAAAAGAGGTAAAACGgggtcactggaagaaagataacatctTTAGTAACTTGTGCTGCCA---------------------AAGACTAAAGCTAGACCAATGTCtcccaccatgcactaaactgaagtcaaaatgaatcatatatctaaatattaaagcataaGCAGTAAACCTGCTGGAGGAGAAaatagatagaactcttgaagacataggtgtaggcaaatgTTTTATGCAGTAAATCTCAATTGCAtgataaatattacaaaaaatcaacaactggactttcaattta-ttaaaagcttttgcacagctaAAGTAATTACATATGGAGTGAAAAAACAGCCTGAAGAGTAGGAAAA-----------ATTCTTAGTCAATTGTTCCACGAAAGACTGATACc---tacatataaagaactgaaaaaaccaaacccc--cagatttaaagatccaatccacaaATGAGCATGAGA--TTAACACATACTTCTCAGGTGATGAAgcacaaaagacaaataaatatatgaaaaaaatgtttgatatGGCTGATCgtcagagagatgcaaattaaaacaattctgagagctcatctcac-tcagaaagaatagcaattatcaagaaataaaccaattaccaatgctggtgaggctgcaaggaaaaaggaatccttctccactgtt----ggaatATAGATTGGtgtaaccactatgaaaatcagtgtgggcATTCCTCAGAAATCTAGAATTACACGTTCCACTTGACATAGATATTCTACTTCTGgatatcttcttgaaagaattagAAGTAACACATCACactgatatatgcacacccatgtatATAGCAACA--GTTTgtagtaactaaatcttggaaacaccccaaatgcctatcaactgacaaatggataaaatacatgt----tttttatacaaagaagtactactcaaccattaaaaagtataaacttcagacatttatagctaaatggatggaaaTTAAGATTATACTCTTAATTTag

a score=5665
s chr3           31776345 250 + 160039680 TTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA
s HiC_scaffold_1 10107694 230 + 233722169 TTTTGAACACAGTTATAAAATT--TCAGTACACTGCCAGAAAACTGAatctaaaaacatat-aaaatgattttacaCAATGACAAAATAGAGTACAT-CCATCAATAATGAATTGGTTCAACACCTGCAAATAAAT-ATTGCAAT---TTACATCAATTAA------------AACCAGATGATAATTTCAATTGATATAGAAAAGGCATTTGATAAATTTCAATACCCTTTTATGGTGAAAATCCTTGA

a score=5177
s chr3           31776479 98 + 160039680 ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT
s HiC_scaffold_1 68361097 98 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT

a score=9549
s chr3            31776513 365 + 160039680 ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc---actttttgcagatgatatgatagtatatataagtgaccctaaaa
s HiC_scaffold_1 169467336 310 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAATAGGAATAgaatgtctttatctcaatctgata---------------------------------ataTGAAAAGAAGAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAATGTATTTCTCAAgtcattagtcagagcaattaaacaagaggaagaaatacagt-----------------gaaaaaattaaattatcattatttcttacagatgacac-----tctatatag--aactccaaaa

a score=27298
s chr3            32260285 866 + 160039680 aaagtGATTCCTTT---TCGTGTTGCCCCCTAGGCA-TCAGCTATGTCAAGATGAAGCTGAACATCTCCTTCCCCACCACTGGCTGTCAGAAACTCATTGAAGTA-GATGACGATCGCAAGCTTTGTATGTTCTATGAGAAGCCCATGGCCACAGAAGTAGCTGATGATGCTGTTGGTGAAGAGTGAAAGGGT--TATGTAGTCCGGATCAATGGTGGGAATGACAAACAAGGTTTTCCCATGAAGCAAGG----CGTTTTGACCCATGGCAGAGTGTGCCTGCTGTTAAGTCCATGGCAGAGTGTGCCTACTGTTGAGTAAGGGGCATTCTTGTTATAGACCAAAGAAAACCTGAGAAAGGAAGTGCAAGTCTGTTCACAGATGCATTGTGGATGCCAATCTAAGTGTTCTCGACTTGGTTATTGTA---AAGAAAGGAGAGAA-GGGTATTCCTGGATGGACAGATACTACTGTGCCTCACTGGTTGGGACCTAAAAGACCTAGTAGAATTCAGAAGCATTCTTAATCTCTCCAAAGAAGATGATGTCCACCAACATGTTGTCAGAAAGCCCTTAAACAAAGAAGGTAAGAAGCCCGGGGCCAAAGCACCCAAGATTCATTGTCACATGTTACTCCACGTGTTCTGCAACACAAACACCAATGTATTGCTCTGAAGAAACAACACACTAAGAAAAAACAAAGAGGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAGGAAGCCAAAGAAAAGTGCAAGGAACAGATTACCAAGAGACTATCCTTACTAAGAGATTATACTTCTAAATATGAATCCAGTC---AAAAATAAGTCTTTAAGGGTAACAAATAAATGACCTTGAATCTCAAAAAAA
s HiC_scaffold_1 183145790 775 + 233722169 aaagttactCTTTTATTTCATAGCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAA-ATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATGTGATCCAAATCAGCAGGAGGAATG----ACAAGGTTTACTCACGAAGCGGGGATTCAGTTCTGAACCACGGCCATGTGTGCCTGCTACT--------------------------CTGAGTAAGGATTATTCCTGTTACAAACTAAGGAGAGCTGCAG--AGACAGCACACATCTGTTGTGGGTTGCACCATGGGTGCCAATCTGGGCAATGTAAGCATTgttatcacacacacaaaaagagaaaacgGACATTCC----TGGACTAATACCACTCTGCCCTGATGTTTGGGGCTCAAAAGAGCTAGCAAAAGCTACAAAC-TTTAGAATGCCTCTAAA------GATGTCAACAAATATGTCATCAAAAAGCCATTATACAAGAAAGGCAAGCAACCCAAGACTTAAGCATCC----------------TGTTACTCCATGTATTCTACAACACAAACTCCACTACATTGCTCTGAAGAAACAGTTgactaag-gaaaataaagagaaggtTACATAATATGGTAAACTTTTGGccaagag-ataaagaaagctAAAG------GCTGGGAACAAATTGCCAAG--------------------------------ACATGCACACTGTCCTGAGAAATAAGG-TGTAAGAGTAACA---AGATAAC-----ATCtcaaaaaaa

a score=19617
s chr3           32260292 824 + 160039680 TTCCTTTTCGTGTTGCCCCCTAGGCATCAGCTATGTCAAGATGAAGCTGAACATCTCCTTCC---CCACCACTGGCTGTCAGAAACTCATTGAAGTAGATGACGATCGCAAGCTTTGTATGTTCTATGAGAAGCCC----------ATGGCCACAGAAGTAGCTGATGATGCTGTTGGTGAAGAGTGAAAGGGTTATGTAGTCCGGATCAATGGTGGGAATGACAAACAAGGTTTTCCCATGAAGCAAGGCGTTTTGACCCATGGCAGAGTGTGCCTGCTGTTAAGTCCATGGCAGAGTGTGCCTACTGTTGAGTAAGGGGCATTCTTGTTATAGACCAAAGAAAACCTGAGAAAGGAAGTGCAAGTCTGTTCACAGATGCATTGTGGATGCCAATCTAAGTGTTCTCGACTTGGTTATTGTAAAGAAAGGAGAGAAGGGTATTCCTGGATGGACAGATACTACTGTGCCTCACTGGTTGGGACCTAAAAGACCTAGTAGAATTCA-GAAGCATTCTTAATCTCTCCAAAGAAGATGATGTCCACCAACATGTTGTCAGAAAGCCCTTAAACAAAGAAGG--TAAGAAGCCCGGGGCCAAAGCACCCAAGATTCATTGTCACATGTTACTCCACGTGTTCTGCAACAC-AAACACCAAT----GTATTGCTCTGAAGAAACAACACACTAAGAAAAAACAAAGAGGAGGCTGCAGAATA---TGCTAAACTTTTGGCCAAGAGAATGAAGGAAGCCAAAGAAAAGTGCAAGGAACAGATTACCAAGAGA------CTATCCTTACTAAGAGATTATACTTCTAAATATGAATCCAGTCAAAAATAAGTCTTTAA
s HiC_scaffold_1 12605456 755 + 233722169 TTCTTCCTTGTGGTATCTCAGAGGTTAGAACTGCTTCAGGATGAAGATAAATGTCTCCTTCTTGGCTAAGAAGGTATATCAGAAACCCAGCAAATCAGATAATGGACAAGAGCATTATACCTTTTTTGAGAAGCATGTGGAAGCAGATGGCCACAGCAGTTGCTGCTGGTGCTCTGGGTAAAGGATGCAAAGGTGATGTAGT-CACATCAGTGATGGGAACCACAAATAAGG-ATTCCCATGAAACAGAATGTT----------------------------------------------CACCTGCTACTGAGTAAGAGGTATCTTTGTGATTAAtccagaaaaattagagaaaga------aattCTCTTTGGGGTTGCATAAAAGATGTCAATTT----------------------------GAAACGGAAAAGAATAGTCTTGGAGTGACTGATAATACTGT--CTCATCACCTAGGGCCCAAAAGAACTTAAGGAGTCTATAAAGTATTC-AGATTTATCTAAA-AAGTTGATGTCCACCCATATATTGT--GCAACCTCcctaaaaaagaaggaaaaagaaacacaggatcAAACTGCCTAATATTCAGAAT--CCTGTTATTCtatatattataaaatgcaaaacatCAATCAGAGTATTGTTCTGAAGAAAGAGCCtgttaag-aaaaataaggaagagaCTGCAGGATGCACTACTAAACTCTTgaccaagagaatgaaag-----agaaagaaatgtcagGAAAAGACC-CAAAGAGATAGTGGCAGCCCTCTCTGAGGACTTCTCC--CCAAGTCTGAAACcagtcaaaaacaagatttaaa

a score=7421
s chr3            32372029 349 + 160039680 TAGTTTGT---CTCCCAAACTGACACTGAAACTGTGTTGCTGTTGTGCCAGTGTTGGGAGGCGGGACTCTAAACGGCTTAGTTCATGAAGAGGGACAAATGCGGTTCTCACAGGGCTGGGTCGGTTACCAGTGGAGCAGGTTGTCACCGAACAAGCC--CCACCCTGAGGTGTTTTCTATCAGTCATGTCCACACTCCCTTTCACTGCCCCAAATGGTGATGCAGCACACGTCTCTCAGAAAGAACCCccctgatcttgaatggccaagctccagaaccaggagctaaag-aaacttcttctctttataaatta-------tcagctactctgctctaggtacagacaagagattaagacaC
s HiC_scaffold_1 223361978 306 + 233722169 TGGTTTGTGCCCTCTGAAACTCATGCTAAAATTTGGTCGTTGTTATGACAGTGTTGGGACATGA-------------TTAGGTCATTAAGAGGGATTAATGCCTTTATCACAGGGCTGGATTGGCTACTGCAGGGGCCGATTGCTACAAGGTGAGGCTGCCCTCCTG-------TTCTATCTCTTCTGCACACA-GCCGTTTCTCTTC-------------------CACCTCTTCCATGAGGGCACC----------------ACAGCCTCCAGAATCAAgggcaaaaataaatttctttcctttttaaattactcagtctcaggcattctgttataatgacagaaaacagactaaggcaC

a score=4187
s chr3           32501805 114 + 160039680 TGCTCTTGGTTTCCTA-AAACCCATTTGTCTGCTCTTGGAACAGTTTCCTATGTTACTGGAGTTCTTTTCAAGAAGACATTGCCCATGCCTATGTCCTGTAGTAGTTT-CCTGATT
s HiC_scaffold_1 16668642 116 + 233722169 tgTCTTTAGTTTGATATGACCCCATTCGTTGGTTTTTGGTAATATTTCTTATGTAACTGAAGTTCTGTTTAAAAAGTCATTGCCTATATCTAtgacttcaagaattttacctgttt

a score=4053
s chr3           32591196 106 + 160039680 CCACAGGCAACGTAGTTCCCGGACGGGGCGTAGGCACAGGTCATCACCCAGGAGGACCTCAGAGGGATGGCGTGCATCTACCACACAAAGAGTGCACAGAGGCAAG
s HiC_scaffold_1 44499881 106 + 233722169 CCGCAGGCGATGGCGCATCCCGACGGGGCGTAGGCGCAGGCCATCACCCAGGTGCAGGGCATGGTCACCGCGTGCTCCTGCAACACAGCGCGCGGTCAGTGACGAG

a score=8477
s chr3            32675879 190 + 160039680 aaataaCTCACTTGGCAATGGGTAAAGAGACACCTTGTTGGTGACATTGC-CTTATATCAGTCAGGGACAGAGCAGATGACTGTCTTTTGTCATTCCTAGCTTGA-----------TGGCCAAAGCTGTCTTATGTCTAGGATACATGAATATCAAATCAAATCAAATCTAGGCAGCAC-AGCACAAGAAGAGAAATACAGAG
s HiC_scaffold_1 195809921 198 + 233722169 aaaagacccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCTGTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatga--aaaaaaaaaaaaa---aggcaataagagcaaaaagggaggattAAAGAG

a score=4736
s chr3            32844245 145 + 160039680 AAACAGAAAGTCAGAGAGATGGGGATTCCACAGTTCATTCTGAGGATATACCC-----------AGATAGTCCAGTTTGCCTCAGttttaaagttctcaccattgcccaatacca---cgcaaagggccaagcttacaataca-agagcctttgaggaGA
s HiC_scaffold_1 210361314 159 + 233722169 AAACAGAAAGTCAGAGAGATCAGGGTCCCACAGTTGCTTCTGAGGGCACACCCCAAGTGACCTGAGGACttccaccaggcccagctcttAAAGGGC-CACCACTTCTGAACACCACCTCTCTGGGGAGCAAGTTTGTAACACATGGAACCTTTAAGGAGA

a score=6462
s chr3           32923466 310 + 160039680 TGTAGGCTGAGCATCCTAACATCTGGGATCCCAA-------ATACTCCCACGTCTGAAAGTTTTGAGTATTGATGCAATGCCTCAGGTGAAAATTTTTACACCTGAGCTCATGTGATGGGTTAGAGTCAGAG-ACAGGTACACTAGAAATAATA-AGAAGTTACCTTCCAGCTCTGATAAAGAGATATGTATGAAATAGAGAAGGAATTATCTGTTTTATCTTAGGCCCCA--------------------ACATACACAAATATTTAAAAACAAAACAAAAACATCTGGAATCTTGGACACTTCAGGACCCAAGTGTTCTGGATTGTGGCTAGTGAAC
s HiC_scaffold_1 66334429 332 + 233722169 TGGAAGGTGAGCTTCCT--CACCTGAAAATCCAAGCTCTACATACTCAAAACTCCAAAATATTTAAGTATGAACATGATGCCCCAATTGGAAAATTTCGCACCTGACCTCATGTGATGGGTTGTTGTCAAAATGCAAATGCACTAAAAACATTGTATAAACTACTTGTGGGCTATATGTATAAAGTATATTTGAAACATA-AATCAATTTTATACTTAGACTTGGCTTCCATCTCCAAGATACCTCATTGcatatttgcaaatatt----aaaaaaattaaaaaatctaaaatctgaaatatttgtgGTTCCAAACAGTTAGGATAAAGGATATTTAAC

a score=5029
s chr3            32923478 210 + 160039680 ATCCTAACATCTGGGATCCCAAATACTCCCACGTCTGAA-AGTTTTGAGTATTGATGCAATGCCTCAGGTGAAAATTTTTACACCTGAGCTCATGTGATGGGTTAGAGTCAGAGACAGGTACACTAGAAATAATAAGAAGTTACCTTCCAGCTCTGATAAAGAGATATGTATGAAATAGAGAAGGAATTATCTGTTTTATCTTAGGCCCCA
s HiC_scaffold_1 220337545 202 + 233722169 ATCTGAAAATCTAAAACATGAAGTGTTCCAAACTGTAAATAGTTTTGATCACTGGCATGATGCCACAAGTGAAAAATTCCATACCTGGCCTTATGTGATGGATTACAGTCAAAATTA--------AACCATTgtgtaaaattaccttcaggcctTGTGTGTAAAGTgtacatgaaatata-aatgaatttcatgtttagatttGAGTCTCA

a score=4223
s chr3           32923478 122 + 160039680 ATCCTAACATCTGGGATCCCAAATACTCCCACGTCTGAAAGTTTTGAGTATTGATGCAATGCCTCAGGTGAAAATTTTTACACCTGAGCTCATGTGATGGGTTAGAGTCAGAGACAGGTACA
s HiC_scaffold_1 59969141 122 + 233722169 ATCTCAAAACCTGAAATCCAATGTGGTTCAAATTCCAAAACTTTTGAGCACTGAAATAACGGCACAAGTGGGAAGCTCTACACCCAACATCATGTGCTGGGACACAGTCGGGTACAGGCCCA

a score=3973
s chr3           32982171 134 + 160039680 TCTCAAAGGGCCTTATGCAGCACAGGATGACCTCAAACTCATCATGAAGCTGACAGTGGCCTTGGATTCCTGATGCTTTTGTCTCTACTCCCCAAGTTCTGGTG-------TTATACCATGACTGTAATTATTA-ATGCATT
s HiC_scaffold_1   295853 142 + 233722169 tCTCACAGTGCTCCATGTGCTCCAAGATGGCTTCAAATTTATTGTGTAGCCCAAGCCAGCCTTAGACTCATGATCCTTTTGTTTCAGCATCTCGAGTGCTGAGATGTTTGTTTATAATGTGAATACAGTAACTATATGCATT

a score=3910
s chr3            33017196 199 + 160039680 CTTAGGAATGGGGCCTTTATCTAAACACCAAGTTCACTTTTGTGTCACACACACCTTGCACACATGA-CTGGAGGTAAG---------------TTTATGTGATAGGTGTTGTGTGTCTGCCTATGTTGT------GGCTGAGACCTGCTGTTTTAACTCAGAGGATTT--TACTTGTAGCTTCATATTGAAGCATGATTAGTTGTGGATCTTAGAGAATTTT
s HiC_scaffold_1 221976183 223 + 233722169 CTTGGGGATGGAGCCCTAATCTAAACAGGAAACCCATTTATGTTTTACATGCACCTTATACACATAACCTGAAAGCAAGCCGGGGAAGGATTCCTCCGTGAGCTGGATCCCACTAGTGCACCCGCATTTTCACATATGCCAAGGTCACATAAGGTCAGGCATGGAATTTTCTGCTTGTGGCATCATGTTGATACTCAAAAAGCTTTGGGTTTTggagcatttt

a score=5394
s chr3           33488528 271 + 160039680 ATTCTACTGTTGTCATTGTATGAGTA-TCATAGAGTATTTATATAAACCTAGA-AGTGTATGTCAATCACTTGATAAGGCCTCTTGACATAATCAAGAGGTGTGGTAAACACGAGATGAATG-GGGCT-----CATCCTGGCATAGCCTGCTGAGCAATTTATAGTA------CTGTTAAAAAAAATAAGTCTGAGTGCACTCTTAATGACTGAAAAACACAAAACAATAACAGAGATACACAC---AAACAGATATGTGAGAATAAATCCTAGCTGACCAGGATTAT
s HiC_scaffold_1 66555224 263 + 233722169 ATTTTATT-TAGTCACTGTGCAAACAATTCGAGTATATTTACTTAGTTCTAGACAGTAAAGTTCAACTATGTGACAGGGTCTCTGGAAGCAATCAAGAGATGTGGTAAACAAGAGATGCATGAGGGCTACTGCCAGCATAACACAGCATCCTG----TTTTACAGTATActtcttttttagaaaaataa---taaatacatcct---------aaaataacaaaaatatagtaaatatataaacTAGTAATAGATATTT--------ATCATTGCTATCAAGGATTAT

a score=6010
s chr3            33488537 222 + 160039680 TTGTCATTGTATGAGTATCATAGAGT--ATTTATATAAACCTA-GAAGTGTATGTCAATCACTTGATAAGGCCTCTTGACATAATCAAGAGGTGTGGTAAACACGAGATGAATGGGGCTCATCCTGGCATAGCCT-GCTGAGCAATTTATAGTA-CTGTTAAAAAAAATAAGTCTGAGTGCACTCTTAATGACTGAAAAACACAAAACAATAACAGAGATACACACA
s HiC_scaffold_1 121535811 216 + 233722169 TTGTCTCTGTGTAAACATCATACAGTGCACTTACACAAGTCTGTGTAGTATACATCAATCACTTGATATGGCCCTTTGATGCAACCAAGAGACACAGTAAACACAAGATTTATGAGGCTGATGCTGGAGTAATGTGGCATattgttttatagtattttttagtAAGTAGAAG---GATTACATt--------ctaataaacattaaaacatataaggtataaataca

a score=4253
s chr3            34010005 111 + 160039680 CTTGGCTTCTGGATGAGTCAGTCAACAACTTAGCTTTGGTTTGAGGACATGGAACTTCAGTGTGGGTGATTCCAATTTGATTGTCAGCTTGTCTG-TGTGGTCCAGTACAGG
s HiC_scaffold_1 228912223 112 + 233722169 cttgattTCTTGGAAGGTCAGATAACAAATTAGTCTCGGTTTAATGATCTGGAGCTTCAGCATGGGCGACTGAATTTTGATTTCTTCCTAGTCTGTTGGGGCGCAGTGTAGG

a score=10661
s chr3            34183472 151 + 160039680 CAGACTTAATGAACAAGCCCGTGAGGGAATTTTGAAAGTAGAACAAAAATATAACAAACTCTGCCAAGTATTTTTTTTTTTCCAGAAGAGGTCAGAATTGATCGCCAAAATCCCAAATTTTTGGGTAACAACATTT-TCAACCATCCACAAG
s HiC_scaffold_1 190123657 146 + 233722169 caGACTTAATGAACAAGCCAGTGAGGAGATATTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTTTTT------CAAAAGAGATCAGAACTGATCGCCAAAATCCCCAATTTTTGGGTAACAACATTTGTTAACCATCCACAAG

a score=15068
s chr3            34183621 239 + 160039680 AGTGTCTACACTGCTTGGGGAAGAGGGCGAGGAGGCTCTGCATTAAT-GACCAGAGTTGAAGTGACAGAATTTGAAGACATTAAATCAGGTTACAGAATAGATTTTTT--------------------------------------------------------------------------------------------TATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTTCCCAAAGAATTTCATCTGAATGAGAGTGGTGACCCGTCTTCAAAGTCCACCGAAATCAAATGGAAGTCTGGAAAGG---ATTTGACAAAATGCTCA
s HiC_scaffold_1 190124149 335 + 233722169 AGTGTCTGCACTGCTTggggaagaagatgaagaagcaTTGCATTATTTGACCAGAGTTGAAGTGACAGAATTTGAAGACATAAAATCAGGTTACAGAATAGATTTTGTAAGTGTTCATATCTGTTGGTCACTTGAGATTAATTTAAGCTTTAGATAAGCTATTTATACTGATAAACTCATCTTGCAATTATTTATTATAGTATTTTGATGAAAATCCTTACTTCGAAAATAAAGTTCTTTCCAAAGAATTTCATCTGAATGAGAGTGGTGACCCATCTTCAAAGTCCACTGAAATCAAATGGAAATCTGGAAAGGTATGCTTTGGAAAATTCTCA

a score=19377
s chr3            34183840 377 + 160039680 AGGATTTGACAAAATGCTCAAGTCAAACGCAGAATAAGGCCAGCAGGAAGAGGCGGCACGGAGAGCCAGAGAGCTTCTTTACCTGGTTTACTGACCATTCTGTCGCAGGTGCTGACGAGTCAGGAGAGGTCATCAAAGGTGACATCTGGCCAAATCCCTTGTAGTAGTATTT-----------------------------------------------------------------------------------GGTTCCTGACATGGATGATGAAG-AGGAGAGGCAGAAGATGATGATGGTGACGACAAAGAGGAGGAGGGGTTAGAAGATATTGATGAAGAAGGAGTTGAGGATGAAGGT---GAAGATGTTGGTgaggaggaaggggaggaaggagaggaggaggagagag-aggaggaggaaggggaggaggaTTAGCACAGACGATTGGTGGATTCCA
s HiC_scaffold_1 190124882 460 + 233722169 AGGATTTGACGAAACGTTCAAGTCAaacacagaataaagccagtagGAAGAGGCAGCATGAAGAACCTGAGAGCTTTTTTACTTGGTTTACTGACCATTCTGATGCAGGCGCGGATGAGTTAGGAGAGGTCATCAAAGATGACATTTGGCCAAATCCATTGCAGTACTATTTGGTAAGTTGAGTATTGGTTTCCTAGAAGTAGTAGTTGTCAGGTTTGGGAAAACGTGAGTTCTAAGGAACTCTTGTAATTTAAAGGTTCCTGATATGGATgatgaggaaggggaaggagaagaagatgatgatgatgatgaagaagaagaaggattAGAAGACATTGATGAAGAAGGAGATGAAGATGAGGgtgaagaagatgaagatgacgacgaaggagaggaaggagaggtaaAGAAAGTAGTAGGCTAAGCTGGAGAAGGACCCTCGCCAC-----ATTGGGGGACTACA

a score=44767
s chr3            34184169 940 + 160039680 aggaggaggaaggggaggaggaTTAGCACAGACGATTGGTGGATTCCAACCTTTTT-TATTTTCTTTTTAGT----------TTTTGACTTTCTCCAGTCCCTGGGAGCAAGTTGCAGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGTCGCCCTCTT-TTGAGGACTC--------AACATCATGGTTCTCGATTAATTTGGGGGGGGGGTATCTTGAGCAAAATACAACAAGAAAAGAATCTCCACA--TTTCTGTTCTAAATTCATTTTTTATCCTTTCTTGTCTCAAAA---ATTTGTGGATTCAACACCACCACCATGCTCTGTGGGAAAGAAGAAAAGCCCTCCAGTTCTCTTGGCTCTGCTGGC-------GGGTGCTAGGCCCCTGTGTAGTAGTTTATAGAATTCTAGCTTTTTTTC-CTTTTCTCTGTATATTGGGCTCAGAGATTACAATGTGTCTCTATGTGAACACAGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCTTGTCTAATAAAAAGAAAAATGTAAAAAGA---AAAAAAGGGGGGTATAGACGGTGAGCA-AGGGTGGGATTGGGGCATCG---GGGATAGGTGGGCATCTGACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGATGTTTAACAGACATCCTTGCACTTTAAGGTGATACTGTT-AAAATAAAATTCTCTCCTGATGATGACTTGAGCCATGACACTCAATGGGAGAATCAGCAGAACCTGTACGGTTTTATTTGGAGTTGACATTCTCTGTTGTAACTTTATTTTTAAtttttttctttttctttttctttttctttttctcttcctttttctttttctttttctttcttttctcgctttttttt----ctttttttGGTTTTCACTGGAAGGAAAAA--GATGCTCA-TTTTAAATGTT-GAAGTGTACAAGTTGCTTTGTTATAATAAAATCA-ATGTGTAAATa
s HiC_scaffold_1 190126115 897 + 233722169 AGGAGGATGAAGGAGAAGATGACTA--ATTGAACACTGATGGATTCCAGtcttcttgttttttcctttttttaaaattttaattttaattttctccagtcCCTGGGAGCAAGTTacagtctttttttccc----ctcttgtgCTCAGTCACCCTGTTCTTGAGGTCTCTCTTCTCACACACCGTGGTTCTC----AACTTTGTGGGGTGAAACCTTGAACGGAACACAGTGGGAAAAGGATCTCTACAACCTTCTGTTCTAAATTCATTTTG-ATCCCCTCCTGTCTCCACACTCACTTTTGGAATCAACACCACCACCGTGctctgtgggaaaaaagaaaa-ccctccA-CTCCCTTCACTCTGCTGGAAGCTGGAGGGGGCTAGGCCCCTGTGTAGTAGTGCATAGAATTCtagcttttttcctcctttctctgtatATTGGGCTCAGAGATTACACTGTGTCTCTATGTGAATATGGACAGTTAGCATTTACCAACATGTACCTGTCtactttctcttgttt-----aaaaaaagattaaaaaaaacttaaaaaaatgggGTATAGAAGGTCAGCAGAGGGTGGGTTTGAGATGTTGGGTGGGTTAAGCGGGCATTTGACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGATG-TTAACAGACATCCTTGCAGTTTAAGATgacactttcaaaaataaaattatctcctAATGATGACTTGAGCCCTGCCACTCGATGGGAGAAT---CAGAACCTGTAGGGTTTTATTTGGAATTGACATTCTCTAATGTaattttgttg-----------------------------------------------------------------------gtttatttttaaaatctttttttgttttcactggAAAGGAAAGGTGATGCGCAGTTTTAAACGTTCAAAGTGTACAAGTTGCTTTGTTACAATAAAACTACATGTGTACACA

a score=7252
s chr3           34353064 245 + 160039680 TTGTTGGCGGTGACAGTATAAACAGACATACAGAGAATCTAGTCACGGAGAAGTCAAGCACATATAATTATGTGCAGTGCATAATGCTTGATAATGATAATGATTGATAAATGACTGTGTTTCTAGTTCATGTATATACTATACTGTATTTTTATCATTATTTCAGAATGGTAGCGTCTTCTTACTTGTGAAGGAAAAGTTTAAT---GGAAAATAGCCCGTGTTAGGCAG--AGCAGCCTTATACCTCT
s HiC_scaffold_1  1561697 237 + 233722169 TTGGTAGTGATGCTAATATAAACAAACCTACTATGCTAACAGTTATACAAAAGTATAGCACATACAATTATATATAGTGCATAACACTTGATAATGATA-------ATAGACAACTGTACTGTTGGCTTATGCTTTTACTATAC---ATTTTCATCATTACTTTAGAAT-GTA--TTCCTTCTAattatataaaacacatttaCTCTAAGACAGTAAGATGTGTTGTGCAGGCAGCAACCTCATGTATCT

a score=41894
s chr3           34375279 1313 + 160039680 ATGCTCTATCATTTCAGACTACTTGGGCCATGTATGGGCTATTGTTTGCAAGAAAGGAAAGAATACATGTAACATACTTCACGTTTTTGTTCCTCTGTCTTCA-----GAGTAAACCTGGAGATGATTTGATGAGGAGTGAGCACACCCACTTCTTGCACACAC-----CACAGACATACCTGTGGCTGAAG-TGAGTTGAAAATGTCCTGTTGAGAATAGTTGTCAGCAGCTCTTTTCCTTATGGTGCATAGGAAATGAAAAATACATTATGTATCTGATTAATTCTATAAATAGGTGTGTGTTCA----------GATGGTCTTGTAATATTAATCTAATGCATTTTAGATGTTTTAATTT-----------GGGGGATACATTTAGTATCATATAGAAAAATTCTTCACAGCATGTTCATA----------------------CATAAACATGAAATTTATTGTAGAAAATTATTTAAACCAAATTTTTAAATCTAGGACTTGGATTTATTCTGTTCATCCGCTCTATTTTTTGTGTTGCCCTTGAGAATATAGACCCCTGAATCCATTGCTGATAAAGCAGTAAATAGACCTTCTGCACTGACAGACCCTTTGGAATGTGTACCTATGAAGtctctctctctctttgtctctgtctctctgtctctgtctctgtctctgtctgtctctctctgccccctctctccctctctccttctctccctccctctctccctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacTCTTTCTTCCTGTGATGTGTGGGACTACAACACACAATGGCTTTTGCACCATTTTTTTAAAACCACTTTTACTTTTTCCTTTGATGTTGGTACCAGAGTTGTTAACAATGACTGATGCTTTGGGGTTTAAACAATTTGTTAGTGGAGACACAACCAG-GACACTAAATTATGA-TGGAGCTTTCTGAATGGGTG--GCAGGTAAATCCAGTTGGGCTGTATTCAAAG-------------------TTCCAGGA--AAGGATGGTTTGTTT-TTATTACTGAATAATATTTTGTGTACAAAAGAAGAAATTCTTTGGTCAGTGTGACAGTCC----TCACATGTGAACTTTTAGGTATCCTTAATTGTATTGGGGTAATTAATAGACAGTTTTGGAATTCAAGGTTCCTAAGAGTTTTATTTGCTTCATTTTGTCCTAAAATAAAT-TTCTTTTCCAATTGTTGTATCCTATGTGCTCTGCTTCAGATTTCAACGGTGAACCCA------------------------TGTTCAGGCA----------------TATCTTA--TGTGTTATACAC-TCAATGCTACTATCTTTTCTAAGGAAACAGAGTCCCTGTTATTTCTGTTGCAAAACACAGAGGAGTT
s HiC_scaffold_1 14569259 1262 + 233722169 ataGTTTACAATTTCAGACTACTTATGCCATGCTTGGGATATTGTgtg----atagaaaaaaatatacttaaCGTATTTCATACTCT-GCACCTTCATCTTCACTTCTAAAAAAATCTGTGAATGATTTGATGAATAG---ATAAATCTATTCCTTTTATACACATACCCAAGGACATGCTTGTGGCTAAAAATGGGTTGATAATGT---GCAAAGGACAGCTGTCAACAACTCATTTCCTTATGGTCCATATTAAA---------CATTTTGTATACGGTTAATTCTGTAAACAGTTGCATGTTCAAAAGATCTATGATGGTCTTGTAATCTTAAtctaatatattttagatattttaatttttttccctcttgggGAATACATTTAGTATAGTATAGAAGAATACTTCATGACATTTTCATATAAGGTTATATAACTTTTCATACATAAACATGAAATTTGTTGTAGAAAATTCTTTAAACCAAACATTTTAATCTAGGACTTCAATTTAATCTGTTCCTTGAATCTA-TTTTTATGTGGCCCTTAAAAACATAT-CCAAAAAATCCATTGCTAAGATAGCAATAAAAATACTTTGGGTACTGACAGACTCCTTggagtatgtatatataaaat-----------------------------------------------------------------------------------------------------------------------------------------------tataaacttgTATTCATATTCT---TTTCTGTAATGTGTTGTACTAAAATCCAAAATGGCTTTTGCacca--tttttaaaacc------attttttccTTTGACGTTGGTACCAGAGTTGCTATGAATGACTGCTGCTTTTGGGGTTAAATATTTTGTTACTGAAGATACAACTAGAAACACTACATTATGGCTAAAATTTTCAGACTAAGTGTTACAGGTAAATTTTGTTAGGCTTTATTCCAAATTTtctcatgccattttttttccaGGAAGAAAAATGGTTCGTTTCCCATTGCTGGGTCATATTTTGTGTAGTAAAGAAAAACTTCTTTGGTTGATGTTGTAATCTTCTATCATACTGCAAGTTTAAAATTATCGTATGTATATTATAGTA---AACAGATGATTTTGAGATTCAAGGCTCCTAAGAGTTTGATTTGCCcatttttcccctaaaataaaTACTCTTTCCCAACTATTATGTCCTAGGTATTGTACTTCCAATTTTGACTTCAGAACCAAGATGTCAACATGAACCAGGCTGCTgttgaaatatatgtatattataaattatCTTATTTGTGTTATACTCTTTCATGTTATTATcttttctaagaaaacaaaaccccTATTATTCCTATTGCAAAGCACACAGGAATT

a score=24367
s chr3            35360280 832 + 160039680 TCTGGGACTGATAGCCGCCACTGGTGCAAGTACTTTCAATGAAGGACCGAGAAGCCAACAAATCGAGAGGATTTTCTTTTATCGTTTTCAAAATCTAGCAGATGCAAAGGATGCTGCCAGGGACATGAATGGAAAGACCTTAGCT-GATAAGCCATCAAGGTGGAGCAAACTGCCATACCACTGATTTAAAGTAATAGATATGGACCACCTCCA------AGAAGCAGGAGCCCTTCTTGGGGGGGTCTTTGAGGAAGAAGAGAGGAAGTGGACAAATTAGAGGTGACCCCACCCACCCAACCCCCACCTGTCATGTGGCAGACACATGAATGATAGTGGCTATTCCATCAATTTTA--CTGAGTTCTTAAAGGGGACTTCTTTATGCAAAAAGAGTGCCACCATCATGAAGTGGGGAATCCCCTTCCTACAAG---------ATCAGGACCTGTAGTAGCAGCAGGAGTGGAATAAGGGGGA-AACCCCTGTGTCATGTGAGAGAGATTGCTAAGAAGGCCCAT----GGAGGAACTCTTACTGCCTCATAGAGATATTTATTTGTTCTGGAGAGATGAGGGGTATTCTATTAAACACAGCTAGTCAAGCAGAGATTATCTAAACTGTCATGATACCAAAAAGTATGTCCAAC-ATCAAGAGATTATACT--------------TCATACCAATTCCCATGATGACTATCCATCAAGAGGCTATGGTGAT---CGATTTGAAGATGG---ATGGAT-GGATTCTGACTATTTAGATTGTCCAAGTGGAAGTTCCTAAAGGGACTCATATGAGAGTCATGATAACTCACACATTGCAACCCTTACATGAGGGGCTACCTCAACCTAATGGAGGAAGC
s HiC_scaffold_1 173500034 832 + 233722169 TTTGGAAAATATAACAGACAGTGGAAATACTGTTCTTGATGAAG-ACCAAGAAACCAGTAAATCAAGAGGATTTGCTCTTGTTACCTTGAAAGCCCAACAGATGCTAAGGATGCAGCTAGGGACAAGAATGGAAAGTCCTCAGATGGAAAAGCCATCAACGTGGAACAAGCCACCAAACCATCATTTGAAAGTGGAAGACAAGGACCACCTCCACCTCCGAGCAGCAGAGGCGCTCCC---AGAGGTCTtagaggaggaagtggagg-----------caCAGGGGCCCTCCCTCAC-------------------TGGAGGGCACATGGAGGATGGTGGCTATCCCATGAATTTTAACATAAATTCTTCCAGGGGGCCCTGCCA-GTGAAAACAGGATCTCCACCACAAAGC-AGGAGTCCTCCTCCTAAAAGGTCAGCCCCATCAGGACCAGC--TCTCAGCAGCAGTGGAATGGGAGAAAGAGCCCCTCTATCATGGAGAAGAGATAGTTATGGGGGCCTGCCTCGAAGGGAACTCCTGCCCTCTCCTAGA-ATGTTTATTTGCCTCCAAAAGATGATGAATATTTGACTAAAGACAGCTATCAAAGCTGACATTACCCAAGTTCTCGCGATACAAGAGATCAGGCCCCACTACCAAGAGAGGATACTTATCAGGATTTCAGTTATTCCAGTTCACGTGATGAC--TCCATCAGGAGGCTGCAGTGATGGGTGATGCAGTGATGGGATATGGTCGGGATTGTGACAAATCAGATCATCCGAGTGGAGGCTCCTACA--GATTCGTATGAGAGTTCCGGTGACCCGTGTGGGGCTCCACCTGCACCAGGGCCCCCGTCGTCT--ATGGTGGAGGC

a score=8610
s chr3           35545866 429 + 160039680 ttgaacAGAG-CAGCACCAGATCCAAAATGGCGGCCAGCAGGAGGCTGATGAAGTAGCTTGAAGAGATCTGCAAACATGGAATGAAAAATCT----CCGTAGCATCCAGGTTGATGACACTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAGCCCTCCATATGATAAAGGAGCCTTCAGAATTGAAGTCAACTTTCCAGCTGA----GTATCCATCCAAATTCCCCAAGATCACATTTAAAACAAAGATCTACCACACTAACATTGATGAGATGGGGCAGGTCTGTCTGTCAGTGATTAGGGTTGAAAACTAGAAGCTGGCCACCAAGACTGACCAA--GTAATCCAGTCCCTCAT---AGCACTGGTGAATGACCCCCAGCCTGAGCACCAACTCTGGGCTGGCCTAGCTGATGAACACTCAAAGGACCGTAAAA
s HiC_scaffold_1 42821610 436 + 233722169 TTGCACAGAGACAGCAGCCATCCCACCTTGGAAGACAGTGAGCAGCAGGTG---TGGGGCGAAGGGATGTGAAGACCTGCTATGACAGAACTGTGGCCATGGTG---AGGCCAGGAAGACTAATTTCTTGGTGTGACATTGGCTGACTGTTCTTGCCAATCCTCCATGTGATAAAGAGAACTTCAGGACTGGAATCAGCTTGCTGGTGCATTCTGTATGCACTCAAACCTCCTTTGATcgcatttaaaacaaaaatcacatatgTCGAGAGAGATTAAAAATGGCATGTTTGATTATCAAGGATGTGCACCAAAAATCGAAGGCCAGTGGCAAAAAGTGACCAAGGGTCACCAAATTTTAAAGTTAGGCACTGGAGCTCCAGTTCAATTTGGTGCATCTCCTCT-GGCTAACCTGGATTAAGAATACTTAAGTGTCCATAAAA

a score=3907
s chr3           35687039 153 + 160039680 TACAAGCTGGGAATCTCTAGACCAGAAACCTAAAACCCAATGTTTAAACATCTGAAACATTTTGAGCCTGGACATGGTACCACAGTAGAAATTTTCACATCAGAACCCATGTAACTGATAACAGTAAAGACAGAAGTACATTTTAAAATATTg
s HiC_scaffold_1 56438595 145 + 233722169 TGCAGACTGAGCACTCTTCGTCTGAAAATCCTAAATGCTCT------ACAGTGAAAACCATTTGATCTCAGACATGACACCACAGTGGAAAAGTTCATGCCTGACCTCATGTGATAGGTGGCATCAAAAACAGAAG--CATACAAAACTATTG

a score=9709
s chr3            35886780 247 + 160039680 TGTCTAGGTAGCTGGCCAGTCAGTGGTTCAGGTCTTGCAAGGTCTCCT---CGGTTTGGATTCCACCTATTCCCGCCA---TCCCAGACAC-----------------------------------------------AGCGGGACACAGATATATGGGACCCGGAGCCCCCAGCACCTGCATAGATGCCAGCTGCGCTGCTAGTAGGCCGGACCAGCCGGCTGGGAGTCCGCACAGAGCCCGGGACCT--------GTGGAGGTGGTGGTGGAGCGGGTGGTGAAGCTTATCTTGTCTCGCTAAGGA
s HiC_scaffold_1 120552891 307 + 233722169 TGTCCAGGTAGGAGGCCAGACGGTCGTTCAGGTCCTGCATGGTCTCCTTCTCAGTCTGGATGCTGCCCATTCCAGCCAGACCCCCGGCCATTCCAGCGGCCAGGCCCGCGGACGCCATGTCGCCCCGGAGGATAGTGGAGCGAGACATGGAGACCCGGGAGCCCGAGCCCCCGGCGCCTGCATAGACGCTGGCCGCGCTGCTGGCCCGCCCGACCCGGTGGCTGGGGCCCCGGACCGAGCCCAGGGACCGGTAGTTGGTGGAGAAGGTGGTGGAGCGGGTGGTGACACACATGCTG-CCCGAGAAGGA

a score=4360
s chr3           36041574 99 + 160039680 ATGTTTAAAGAAGTAGAAATGTTATATATCTAGACTGGAGCTTTGTACACTGTACACATAAATCAAATGATCACAGTGTGTCCTGTAAATTTATACAAT
s HiC_scaffold_1 48168472 99 + 233722169 ATGTTTAAGGAGACGAAAATGTTAATTACCATGATTTGATCATTACTCACTGTACACTTATATCAGATTATAACATTGTACCCCATAAATTtgcacaat

a score=63009
s chr3            36116465 1334 + 160039680 ATTTCCTTAGAGCACTTTATTTGATTCAATGCACACTAAAAA-TATTCACTTCTTC-GACAATTACATCAAATAGTTTTCTGAGGAGGTCTACAGTTTGAACTCCTTACTTTGAATGTTTTGAGAGGAAACTGATTTGCCACACATCTGCTGACACCTGAAATGTTTCTGATGTTGAATTC---TACTTTGGTCACTTTATATTCTACTGTGTCCATACAGAAGTAGGACTACAACTCTTAATCCAGTG---GAGAGGC--GCACACAGTCTAAAGCACAC----TTGATCTGAGCGTCACAACGCAGAGGAGGAAGATAAACCCGAGC-GAGCACACCTGTCTGCTGCAGGTCTGCTCCTGCCGTCAGG-TAGTAATAAGGTTGGGTTTGTTCCAATGGTAATTCAAGTGGGGATTGGCTCATTTTCAGGATTTACTTAAAGGTCTC--TTCTAAGTCATTCAAAGCCCCCAGTCCATGCATGTGTCCCACTTAGTGGACAGATGAGTAATCTAACCCCACCGAGTTTATTTCAGTATTTTGATATTTCAATAATAAGCTGCTTCTGAAGATTTTTTGAGATGTCTGTTCTCTATTAAAATAAGATAGAACCTCAAAATATGAATGTGAACATTAGAAATAGACAGCATAT--TACAAATCCACTCTTGATAGGAACATTAGTAAGAATACACATTAGCTTAAAAAACAGGCTCAGCAAATGTTGCTGATCTGCCAGAAGTCTGAGCTCACTATTTACAAATAAGACAAAGTGAAATACAGAAAATTGTACACATTTGGTAGCTGACAGATTTCTGTTCACCAATAGTGGTCTACTGG-AAACTGGTATGAA-GAAGACTAGGTTAA----AGTTGTCACCTTCTCAATCTAATTTACCTACACAGAA---------AATTCTGAAATAAATGTTCTGCCTTTCAGGGGAATAACTTAACTGTGTGATCAGGTGATTTGACCAGTAAGTGTAATTGT-TTAGAGGATTTTCTGGAAATGATTTCCATAAAACTGTATGATCCACTACTAAAAGTTATCA---TCATTTTAGTACACCACCGAAGTTGACTAAACAATCAATGATTATG-TTCCTAGACCCTACATCT-----AAGAATAAAACTACTGCTGAGTTCTTTAAACCAATTTAAAAACTAAGGCCAAATAGATCAAAATGAGAGAAAATGCAGTGACATGATTCAATACATCTTT--AGTGCATTCAAGTGGAATCTCATGTACTCATTTTTAACCAGAAAATAACCCAT----TTGTGCCTGTGGAGGGGAAGGCTTTTAAGTTGTCTTGAATATCTGTGTGCTCCAG--CAGAGACA---CATCTTGCAACATGAGCTTTGCAGGCTTGC
s HiC_scaffold_1 120027588 1337 + 233722169 atttttttagagcactttatttgaTTCAATATGcactaaaaaatatttacttcttaAGACAATTATGTCAAATAATGTTCTGAGTAA-TCTACGGTCTGAACTGCTtagctgaattttttaaaaaggcaaatgatTTGCCACAAATCTGCTGACGTCTGAAAAATATCTAATGGCAAATTCCTCTATTTTGGTCACTTTATATTCTAATGTGGCTATACAAAAGGAGgactaaaatttttaattcaatgtAAGAGAAGCCTGTACACAGTCTAGAACACACATCTTGAATGTCAGGATcacaaat--gagaagaaaaatgaaccaGAGCCAAGTTGGTTTATCTGCCTCAGGTA-----CTATAATCAGGACAGCAA--AAGGTGGGTTTACTCCAGTAACCATTCAAGTGGGGATTGGCTCATTTTCAGGATTTACTTACATGTCTCACTTCTAAGTCCTTTAA-GCCCCGAGTCCATGCAAATGTCCCACTTGGTGGACAGATGAGTAATATAACCCCACCGGGTTTATTTcaatgttttgatattttaataataagcTGCTTCTGAAGATTTT--GAGAAGTCTGTTCTCTATTAAAATAAGATAGAACTTCAAaatatgaatgtgaacattaGAAATAGACAGCATATATTACAAATCCATTCTTGATAGGAACATTAGTAAGAATACACATTAGCTTAAAAAACAGCCTCAGCAAATGTTGCCGATCTGCCAGAAGTTTTAGTTCATTATTTACAAATAAGACaaagtgaaatacagaaaattttacaCATTTGGTAGTTGACAGATTACTGTTTGCCAATAGTGGTCTATCGGAAAACTGTTAGGAAGGAAGACTGGATAAGAGCCAGTTGTCACCTTCTCAATCAAATTTGAATATACAGAAaacaagattaattttaaaacaaacattctGTCTTTCACAGGAATAACT----GTTATGATCACATGATTTGACTGGTAAGTGCAACtgtgtgaaaatattttctggaaatgtgtaTTGTAGCTCTACATGATCTACTACAGAAAATTGCCATTTTCACTTCAGTAGACCACTGAG---GGCAAAACA---AATGTTTATATTTCCTAgatcatatgtataaataaaaaataaatgtactgtTGAATTCT------------------------CAACagcatgaaaatgagaaaaaatataatgGCATGATTCAGTGCATATTTCCACTGACAGTAAATAAAATCTGAGCtac----ttttaaacttaaaaaaccCCAGTATATTACATGTGTGAAGTAG-ATGCTTATAAGCTTTTTTAAAC-TAATTGCACTCTAGTCCAAAGACAATTTATCAAGCAACATGAGCCTTGTGTATTTAC

a score=4731
s chr3            36162627 92 + 160039680 CCAGGTCTTGCTGTGTCTAAGCCATACCTGGTTACCTGTCTGGAGCAAAGGAAAGAGCCCTGGAATGTAAAGACGCAAAAGACCATGGCCGT
s HiC_scaffold_1 161911502 92 + 233722169 CCAGGTCTAGCTGTCTCTAAGCATTACCTGATCACATGTTTGAAGCACAGCAAAGATACCCAGAATTTGAAGACATAAGAGACTGCAGCCAT

a score=3895
s chr3           36189137 104 + 160039680 TTTGTCCACTGATGAATTTGTAGATGAATGGACTACTAGGAAATGGAGCACGATTGGGAGAAGTAGGTTACTGGCATAGGACTTTCCCCAGATAGCTTCTGTCT
s HiC_scaffold_1 31759395 104 + 233722169 ttaatcCACAGATGGGTTCATAGTTGAATGGGCGGCTAGGAAGTGGGACCTAATTGGAGGAAGCAGGTCACTAGGAGCAGCCCTTTGGGCGATATATCCTATCT

a score=4304
s chr3            36295586 280 + 160039680 GATGTGTAGGACAGCTGCAGGT-TGTTAGGGCACACTGGTTCACGGCAAACATTTATGTAA-TGTAAGTACACTGTAAAATACTCACAAAAAGTATGGTA-----AATACATAAAC-----CCGAAATACATATTGTCAAGTGCTATGGACTGCACTTACTT-------CTGCTCTTTGGACA-CTGGCAGCTAGACAG-----CTTTATTGATATCAGTGTCACTTTGTGAGTGACAAGCTGTGCTATCACGGTGTGACAGCTGCAGTGTCGACAGATTACTGGAATATTTTGGCTCCACTGTA
s HiC_scaffold_1 110661419 302 + 233722169 GATGTATAGGAT-GCTGCTGGCATAATGTGACATAGtgttttaaagcaaaaattttaataaatactaattcactctgaaa--atgacaatatataTAGTATTAAAAGCCCATAATCAGTAACAGTGTTATTTACTACCAAGCATTATGTagtttacataattttatgaGCTACACTTTATATAACTGGCTTTACAATAGATTATTTTTACCATCATCAGCACAAACACAGTAGTAACAGCTTATGCTGCAACATTAAGGCAACTACAGTGTCACTAGATGAATGGAACATTTTAGCTCCATTGTA

a score=20315
s chr3           36539168  985 + 160039680 ttttTGTGGGTGCAGCAGACTTTATTGGTGGTATTAAAGAGAGTAGGGCTCCTTAGACCTCTCCCATTAATGTGGAGGTCTGGGATAGAAAACT----GTGAGGAAGATCTTAG---------GGACCGAGTTGGAACAGGGACTCCTCAGCAACCAAGGGCTTCTCTCTTGCTCTCAGTGTTCTCGCTGGAGTGGGTGGGCCAGGGTTTCTTACTCCATTGGGGACCATGTAGGCCACAAGGTCTGCCACTCTG-------------------TGTCATGCCAGGAAATGAGCTCTACAAAGTTGTCATTGAGAGCAATGCCAGCCACAGCATCAAAGGCAGAGGGGTGGGAGTTATTACTGAAGTCTCA--GGAGACAACTTGGTCCTCAGTGTAGCCTAGGATGCCCTTCAGTGGGCCCTCAGATGCCTGCTTCACCATCTTCTTAATGTCATCATACTTGGAAGGTTTCTCTAGGCGGCATGTCAGATCCGCAATGGATACAATGG-GGGTAG-----GAGATCATGCCATGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCATCAGTTTATGCAAGAATGATGTTCTGGGTAAACTCATGGCCATCATGACACAGCTTTCCAGAGGGGCCAACCATAGTCTTCTAAGTGACAATGATGGCATGGACTGTGGTCATGAGTACCTTCCACAATGCCAGAG---------------TTGTCCTGGAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTGATGG-------------------------------------------------------------------------CTTCCCATTGATGACAAGACTCCCATTATCAGCCTTGACTTTGCCACTAAACTTGCCATGGGGAGAGTCATCCTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCATTGATGGGCAACGGTCTCCACTCTGCCAACTGCAGATGAGAAGGCAGCCCTGGTAATCA------------GGTTAAATCCGTTCACTCTAACCTTCACCATCGTGTCTAAGGGATGATGCTGGCACTGGCACTGGCACTGCATAAGATGCAGCTGTCTCTAGAACAGGGAGGA
s HiC_scaffold_1 97936679 1215 + 233722169 TTTTGGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGC--------ATCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctcttttcat-----ttcttgctcAGGCTGGTGG----------CCTACTCC-TTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCC-AGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCAT---ATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATAGG--------ATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGT-CCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGTTCACCCATTTTGATGCTGATAAATCTTACTCCTGGACTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGAT-GACAACAATATCTACTTTGCCTGTCCT------GAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGCCATG-------------AAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=11616
s chr3           36539472 679 + 160039680 AAGGCAGAGGGGTGGGAGTTATTACTGAAGTCTCAGGAGACAACTTGGTCCTCAGTGTAG--------CCTAGGATGCCCTTCAGTGGGCCCTCAGATGCCTGCTTCACCATCTTCTTAATGTCATCATACTTGGAAGGTTTCTCTAGGCGG--------CATGTCAGATCCGCAATGGATACAATGGGGGTAGGAGATCATGCCATG----CCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCAT----CAGTTTATGCAAGAATGATGTTCTGGGTAAACTCATGGCCATCATGACACAGCTTTC-CAGAGGGGCCAACCATAGTCTTCTAAGTGACAATGATGGCATGGACTGTGGTCATGAGTACCTTCCACAATGCCAGAGTTGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAAGATGGTGATGG-CTTCCCATTGATGACAAGACTCCCATTATCAGCCTTGACTTTGCCACTAAACTTGCCATGGGGAGAGTCATCCTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCATTGATGGGCAACGGTCTCCACTCTGCCAACTGCAGATGAGAAGGCAGCCCTGGTAATCAG------------GTTAAATCCGTTCACTCTAACCTTCACCATCGTGTCTAAGGGATGATGCTGGCACTGGCACTGGCACTGCAT---AAGATGCAGCTGTCTCTAGAACAGGGAG
s HiC_scaffold_1  9527482 906 + 233722169 aaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAG-GATTCCTTTGAGCCCTGGTTCACCATCTT---AAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCT-CTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTAGCTGTTAGTAGTATAGGTAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTCTCAGGAGAAGGGGCTCCAACATTTATATACTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAGT-GTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAG-AATAATATCCAGTTTG----CTGGAGTT--AAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGAT-------GCAATGGCA-TAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=4379
s chr3           36539857 138 + 160039680 TCCTGGAAGATGGTGATGGCTTCCCATTGATGACAAGACTCCC-ATTATCAGCCTTGACTTTGCCACTAAACTTGCCATGGGGAGAGTCATCCTGGAACATGTAGACCAT-GTAGTTGAGGTCAATGAAGGGGTCATTGA
s HiC_scaffold_1  3815647 136 + 233722169 TCCTGAAAAGTGGAATTGGGATTC--TTACAGACTGTACTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCACAGTA--TGaagtcaaggaaagagacattga

a score=37106
s chr3           37077591 748 + 160039680 GATGCAGAAACGTTTGATTTAGCTTTAGCAGAGGAGAAATGGAGGAACCATAGACTATTAAGGATGAATTCAGGAAGGCCTGAGACCATGGAAAACTTGCCTGCACTGTATACTATTTTTCAAGGAGAGGTTGCTATGGTGACAGAAT----------TATCAAAATCCCAGGCTGTAGGAAGCAAGGTCTGGTTCATCGAACTCCCATGTCGTCCTGTCGAGTGG-ATAAGCCTTCTGCAATAGTGGATGTTGGAGACAAAGTGTGGGTGAAGCTTATTGGCTGAGAGATGAAAAATGATAGAATAAAAGTGTCCCTCTCCATGAAAGTTGTCAACTAAGGTACTGGGAAAGACCTCAA---CAACAACATTGTCATTGAGCAAGAAGAGAGGCACAGTCAGTCCTTCAGGATTACACTGGGCAGAAGATCACCCTTGAGGCCGTCCTGAACACAACCTGCAAGAAGTGTGGCTGCAAAGGCCACTTTGCAAAGGACTGTTTCATGCAGCCAGGTGGAACCGAGTATTCTCTGAC-CCCTGAAGAGGAAGAGGAAAAAGAGGAGACAAAGGCAAAAGGACTTGAGAAGCCTGATCCCACAAAGAATTCGTCCAGGAAGAGAAAGAAGGAAAAGAAAAAAAAGAAACATAGAGACAGGAGGTCATCTGATTGTGAAAGCTCTGACTCTGAGAGTGACACGGGCAAGAAGATGAGGCATTCATCAAAAGACAGCAAGGCCACCAAGAAGAAAAAGAAGAAGCAG
s HiC_scaffold_1 23196306 728 + 233722169 GATGCTTGGACTCCTGAATTAGCTTTAGCAGAAAAGAAATGCAGGAGTCATAGAACAT-AAGGATGGATTCAGGAAGCCCTGAGACCGTGGAAGATTTGCCTGTTCCCTACACTATTTTCCAAGGAGAGGTTGCTATGGTGACGGACTATGGAGGCTTTATCAAAATCCCAAGCTGTCGGAAGCAAGGTCTGGTCCATCAAACTCACATTTCATCCTGTCGGGTGGGATAAGACCTTTGAGATAGAAGATG---AAGACAAAGTGTGGGTGAAGTTTATTGGCTGAGAGATAAAAAATGATAGGATAAAATTATCCCTCTCCAAGAAAGTTGTCAACCAAGGGACTGGGAAAGATCTCCATCCCAGCAGCACTATTATTGAGCAAGAAGAGA-GCGGAGGTggtcttt----------------------ttaatttcaaagctGACCTAAGCACTAACTTTATGAAATGTGTCTGGAAAGGCCACTTTGGAAGAGATTGTTTCATACAACCAGGTGG-ACCAAATATTCtatggtaccctgttgtgaaaaaggagaaagaagaggctAAATCAGCAGAATCTGAGAAGCCTGACTCCATGGAGAATCcatcc------agaaaaaagaaaaggaagaaaaagaaacataccaGCAGGAAGTTGGCTGACTCGGACAGCTCAGATGCTGCGAGTGACGC-AGCAAAATGGCAAGTCACACATGAAAAGACAACAAGGcagtaaagaagaagaaaaagaaaaag

a score=21792
s chr3            37116702 1041 + 160039680 CTGATTTTTATTTGTATAACTGGCATT--------AAATCAGTTTCCCTTATGTGTAAATTCATTTATCAAATATGCTTTTCTTCTTAGCCTATTAACCCTAATATCATTCTACTGTTCTGACACACTTAAT--TACTAAGGACACTGAAATATTTTGTTAATTC--------TCCCAAACCAGCAGTTTAAAATTTGACTGTTTCTGCTTACTCT------------CTCTACTCATGGCTTTATCAACCATAGAGTTTTCTTCACGATCTGTACACTCCTA-CTTCTCCTAGACTATTTTATCAAATACCTCCT-TTATTTTTAATCACATTCATTATCTTTGCTTCAACCAAC---------------TTTATTAGCTGGGAAGGCATAGG---TATATCATTTTTT---------------TATCAGC----------AAATAGTGCAGCCCTCCAAGCAATATTGTATAATCACATTGGAGACATTGGATTCATTTTA-----GACATGATCCTTTGTAAACATCAACTCCTGAGAACTTCAACAAATATTTTTTTCCTCACAACATCAACTTAATTCCTCTCCTA---GACCTTCTAATTGCAGCCCTAGGAAAATCAGCACAATTTACCCTCCACCTCTGACTCCCATTAACCACAGA-GACCCACTACCCCATCTCAGCCCTCCTCTCATTCAAGTTCTGTAGTAGTTGAAGCAATCTTCTTAATAATCTGATTTTAATCTTCATGAAATAATAGT-ACT--ATTATAGTAT-----TTATGTCTTGGCTCATTAACCACACTGTTCACAGCCATCTATGCAATTAC-TAAAATGATATTTTGAAAATTTTTAACATTTTGCACATCCAGCCAATTAGGCCTTATAATAGTAACTGTAGGTGTAAATCAACCCTCTCTAGCTTTCCTTCACATCTGTacacacacacacacacacacacacacacacacacacacacacatacacacacacacaTTCTTCAAAGCTATACATTTTTATGTGCTCAGG-------AATCACAGCTTTAATGATGAACGAGACATCTGGAAAAAAAAGGGTAATCTACTAAAAGCCCTTACTTTTACATCATCTTGTCTAATTATCAGTAGGCTT
s HiC_scaffold_1 233645428 1082 + 233722169 CCAATTTTAACCTCCATAACCAACATTCACAAAAAAATTCCGTTCCCAATATATGTTAAATCACTCACCTCCCTATCTTTCTTACTTAGCCTAATCCCTACTCTTTCATTCCTCAACTCAAAC-CACGAAACAGTAGTAACAAC-CTGAAACTGACTAACCATTCAAACTTTACACCTGAACATAAACTTTAAACTAGATTATTTCTCTATCCTATTTATATCAGTAGCTCTATTCATGACATGATCTATCATGGAATTTTCTCTATGGTATATACACTCAGATCCTCATATTGATAAATTCTTCAAAtatctcttattatttttaattactataCTAATTCTAGTTACAGCCAACAATATATTCCAACTTTTCATTGGCTGAGAAGGAATAGGAATCATATCATTCCTTCTAATTGGATGATGATATGAGCGAGCGGATGCAAACACAGCAGCACTTCAAGCAATCCTGTACAAACGAATTGGGGATATTGGATTTGTATTATCAATGGCATGATTCATTATATATTTCAACTCATGAGACCTCTAACAA-CGCTtctcaatacaaaacaaaacctctcTACTACTCTTATTCGGGCTATTACTAGCAGCCGCTGGAAAAT--GCCCAATTCGGACTCCACCCACGACTCCCATCAGCAATAGAAGGTCCAACACCA-GTATCAGCCCTACT-TCACTCAAGTACAATAGCAGTAGCTTGAGTTTTCTTACTAATCCGCTTCTCTCCCTTAGTGCATGATAATCACTTAATTCAAAGGTGCACATTATGCTGGGGTGCTATTACTACACTATTTGCTGCAATTTGCGCAATAAcacaaaatgatatttaaaaaaaacgtAGCATTCTCTACCTCTAGTCAACTAGGTCTAATAACAGTTACAATTGGAATTAACCAACCATACCCAGCCTTCCTCCATATTTG------------------------------------------------CACACACGCTTTCTTCAAAGCCATAC-TTTTTATGTGCTCGGGCTCAATCATTCACAGTCTAAATGATGAACAGGATATTCGAAAAATAGGGGG---ATTATTCAAAGTTATACCTATAACTTCATCCTGCTTATTCATTGGAAGACTT

a score=4291
s chr3            37433148 102 + 160039680 CCTAGAGGGTTATTACTCTATGGTCCTCCAGGTACCGGAAAGACAATGATTGCTAGGGCTGTTGCTAATGAAGTTGGAGCTTATGTTTCTGTAATTAATGGT
s HiC_scaffold_1 178242229 102 + 233722169 CCTCGGGGAATCCTGCTCTATGGACCTCCTGGAACAGGGAAAACCCTCATTGCTCGAGCTGTGGCAAATGAGACTGGAGCCTTCTTTTTCTTGATCAATGGT

a score=4056
s chr3            37451712 141 + 160039680 TGAAACATCCTAAGTCTTTCAACAGAATGGGTATTCAGCCACCCAAAGGAGTTCTCTTGTATGGGCCACCTGGATGCTCAAAAACAATGATAGCAAAAGCTTTGGCCAATGAAAGTGGGTTGAACTTTCTAGCTATAAAGG
s HiC_scaffold_1 178245410 141 + 233722169 TGGAACATCCAGACAAATTCCTCAAGTTTGGTATGACACCATCCAAGGGAGTGCTGTTCTATGGACCTCCTGGTTGTGGGAAAACCTTGCTGGCTAAAGCCATTGCTAATGAATGTCAGGCCAATTTCATCTCCATCAAGG

a score=3538
s chr3            37586254 108 + 160039680 AAAATGGGAATAATAATACAGAGATCGGAATGGAACACCCACCCATCTCACCCGGGTGCTGGGAGAATTAATTAACGTCTGTAAAGGCCTTTGAGTTCCTTGGGGGGA
s HiC_scaffold_1 223637708  90 + 233722169 AAAATGGGGCTAAT------------------GACCATCAGCCTCCTGCACCGAGGTGTTGTGAGAATTAATTAAAGTTTGTAAAAGGCTTTGAGATCCATGGATGAA

a score=3711
s chr3           37605352 403 + 160039680 GAGGGCCGATGCTGGCTGCTCAGCCTGACTGGACTGAGAAACACCTTCAAGATCAGTAAAGCTGGACTCTGGGCGGACGAATGCAGGAGTTTCCA-----------------------TTCACTGTCAGA-----TGCTGAGCCTCTGAACCAGCGGGGTTTGATCCAGTGAAGGATGGGTGGAGCTGGGAAGAGAATCTGATTGGAGGAGGGAGTCACTGTGGGCC----CCTCCGGTTCCTGGTTGCCAT--GGTGA-----CTTGCTTCA-----------CCCTGATGCTCTACCTCACATGAGGCCAGAATGGATGTAGCCA--------AGGACTTTGGAACAAAATCCTAAACCTGTGAGGGAGAGTAAA----TCCTCTTTGGGCCC--CTTTCCCA-GTCATTTGTCACA---CAGTGAACGGAGCTG------ACACAGAAATCGTGAAGGCCACATCAGTTACACT
s HiC_scaffold_1 73658800 455 + 233722169 GAAGGTTAATCTTGATTA-TCAACTTGATTGGATTGAGGAACACCTAGAAAATCAGTAAAGCATACTTCTGGGCGTGTCTGGGAAGGCGTTTCCAGAGAAGATTGGCATGCAGGACAGCCAACTGATGGAAGACCTGCTTAGCACGTGAACAATGG-----TGACAAGGTGCAGTCTGAAT-------GGGAGAAAATCC-ACTAGTGCAGGTGCCCTGCGTTTGCCTGTATTTCTGCCTCTCAACCACCGTAAGGTGAGCGTCTCTGCTCCAAGTCTTCTCTGCCATTGTGTTCTTTCCTCAAGCAGGCCTGGAAGCATCTATCCAGCTGAATGAGGAC--TGGAAC----TTCCACAGCTGTGAATCAAAGTAAATAATTCCTCTTTTGAACTGATTTTCTCAGGTCTTTTGTTATATAGCAATGAAC--AGCTGACTGACACACAGAGATTGAGCATTCCCTATTAGGTTCCCT

a score=16328
s chr3           37959611 496 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGA--CTCTTCTGGTTT---TCTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATG-TTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTC---TTCTTTCCCTTTGTCATTTTGGTGAGTTACTGGAAGA
s HiC_scaffold_1 32421026 435 + 233722169 TTATTCCTTGAATTCATAGGGAGT------------CTCCAGCTCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTGGGC--TGCAGGctggcatttc-----------------tttctttttgtcatcttttttctTG---------------ATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGC-AAGATCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGGACATCTCT-----GGCATTC--TTATGGACAGTACCCACTCCCT---TGTCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctA-------------AAGTACACCTCAggttttttccctttctcatttcTGCAAATTAGTAGAAGA

a score=4362
s chr3           37959611 68 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGT
s HiC_scaffold_1 77422670 68 + 233722169 ttaTGCCATGAGCTCATAGGGAACAGGCTCCAACAACTTAGGCTCCTTCCCTTTGGTGCTCACAAAGT

a score=29020
s chr3            37959611 515 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTC-----TGGTTTTCTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCCTTTG------TCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGGTAGAAAG
s HiC_scaffold_1 178274457 526 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaag

a score=28684
s chr3           37959611 530 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCT-CTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTT--CTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCC------TTTGTCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGGTAGAAAG---------------AGTGAGACTATTTCT
s HiC_scaffold_1 80725745 551 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATATAG--TAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGC-CAAGAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAAGTTAATGTATGTTTACAGCAAGACTGTTTCT

a score=28022
s chr3           37959612 514 + 160039680 TAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTT-CTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACC-CTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCC------TTTGTCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGGTAGAAAG
s HiC_scaffold_1 16174762 512 + 233722169 taTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCT--GAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGACTGAAAG

a score=10918
s chr3           37959804 346 + 160039680 TTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTTCT-GTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCCTTT------GTCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGG----TAGAAAGAGTGAGACTATTTCTATTTTCTTT
s HiC_scaffold_1 99840709 348 + 233722169 TTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCAAA-------CTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTAC--AAAGATGACAGTTTTTGACAAAAGGAAGCTCGTGacattctgtttttccttt

a score=3691
s chr3            37968359 78 + 160039680 GCAGACAAAGATGTTTGTGTCTTCCCACAGGGCCAGAATGTATTGAAAGTCAACAGACTCACAAAGTGCAGTAGTTTT
s HiC_scaffold_1 140475346 77 + 233722169 GCAGACCATCATGCTCATGTCTTTCTACAGTGATAGAATTTATTGAATGTCAATAGACTCACAAC-TAcactagattt

a score=4148
s chr3           38107439 68 + 160039680 TTAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGT
s HiC_scaffold_1 77422670 68 + 233722169 ttaTGCCATGAGCTCATAGGGAACAGGCTCCAACAACTTAGGCTCCTTCCCTTTGGTGCTCACAAAGT

a score=17591
s chr3           38107439 596 + 160039680 TTAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGA--CTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATG-TATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAATCTCAACCAGTATTAATGAATACATTTTATATGTTAATCTTCC--ACTTTTTCAAATTTTCTCCTTATTTTTAGTAA
s HiC_scaffold_1 32421026 529 + 233722169 TTATTCCTTGAATTCATAGGGA---GTCTCCA---------GCTCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTGGGC--TGCAGGctggcatttc-----------------tttctttttgtcatcttttttctTG---------------ATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGA-TCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGGA---CATCTCTGGCATTC--TTATGGACAGTACCCACTCCCTTG---TCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCT--CAggt--------tttttcccttt------ctcatttcTGCAAATTAGTAGAAGAGAGAAATTCTAACCAAAAGCACTACT-GTACTACTTGTAAAAACTCCTGTATTCCTTTTCCTAAtcctgttctcttttttccttcttcctagaAA

a score=30944
s chr3           38107439 521 + 160039680 TTAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCT-CTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTT-GCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAA
s HiC_scaffold_1 80725745 520 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATAT--AGTAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCCAA-GAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAA

a score=31561
s chr3            38107439 521 + 160039680 TTAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCG----GTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAA
s HiC_scaffold_1 178274457 525 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaa

a score=30489
s chr3           38107440 520 + 160039680 TAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACC-CTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAA
s HiC_scaffold_1 16174762 511 + 233722169 taTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCT--GAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGACTGAAA

a score=13547
s chr3           38107631 444 + 160039680 CTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAATCTCAACCAGTATTAATGAATACATTTTATATG---TTAATCTTCCACTTTTTCAAATTTTCTCCTTATTTTTAGTAATTACCTGTGATTTCTTTATCTTCTGCCAGTTAACAGATAC
s HiC_scaffold_1 99840708 420 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCA-------AACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTAC--AAAGATGACAGTTTTTGACAAAAG-GAAGCTCGTG---------acattctgtttttcctttaacTCTTACTTTTTCACACTTTACCCTGCTGCCTATGAACCTCCTACG------TCACTTTCTG--AGTAAACTGATGC

a score=20543
s chr3            38254009 764 + 160039680 GAAGCTGAATAGCTTCCTCTCCAGCCACCAGCAGTTATAAACTCATTGACATA-GTTTGTGAAGGCAAGCTTCATGCTTTCTATAAGAAGCGCATAGTCACAGAAGTAGATGCTGATGTCCTGGGTGAAGAGTGGAAGGCTTATA--TAGTCCAAATCAAGAGCACGAATAACAAGCAAGGTCTTTCCATGAGGC----AACATATCTTGACCCATGGCAGAATGTGCTTGCTA--TTGAGTAAGGAGCATTCTTGCTGCAGACCAAAGGGAATGAGAGGAGAAATGCAAGTTTGTTTACTGATGCGTTGTGGGTGTCAATTAGAGTGTTCTCAATTTGGTTCTTaagaaaagaaaagaaaagaaaagaaaaaaaaaagaaaagaaaagaaaggaaaagaaaaaaaagaggagaaaataaaGAGGGAAGGATATTCCTGGGCTAACAGACACTACCAT-CCTTGGTGGTCAGGGCCCAGAAGAGCTACCAGAACCCTCAGACCTTTCA--GTCTCTGAAGAAGATGATGTCTACCAAGAAGCTGTGAGAAAGCCCTTAATACAGAAGAATCTCAGAACCAAAGCGTCTGGATTCTGTGTCTTGTTCGTCCACGTGTCCTGCAACACAAACATCAACATATTGCTCTGAAGAAACAACACACTAAGAAAAATCAGGAGGAAG-GACAGAATATGCTTAACTTTTGGCCAAGAGAATGAAGGAAGCCAAAGAAAACCACCAGGAACAGATCACCCAGAGATGCAGGCTGTCCTCAGAGA
s HiC_scaffold_1 183145843 685 + 233722169 GAAGCTAAA--ATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATGTGATCCAAATCAGCAGGAGGAATGA----CAAGGTTTACTCACGAAGCGGGGATTCAGTTCTGAACCACGGCCATGTGTGCCTGCTACTCTGAGTAAGGATTATTCCTGTTACAAACTAAGGAGAGCTGCAGAGACAGCACACATCTGTTGTGGGTTGCACCATGGGTGCCAATCTGGGCAATGTAAGCATTgttatcac----------------------------------------------------acacacaaaaagagaaaac----------gGACATTCCTGGACTA----ATACCACTCTGCCCTGATGTTTGGGGCTCAAAAGAGCTAGCAAAAGCTACAAACTTTAGAATGCCTCTAAA------GATGTCAACAAATATGTCATCAAAAAGCCATT-ATACAAGAAAGGCAAGCAACCCAA------GACTTAAGCATCCTGTTACTCCATGTATTCTACAACACAAACTCCACTACATTGCTCTGAAGAAACAGTTgactaaggaaaataaagagaaggtTACATAATATGGTAAACTTTTGGccaagag-ataaagaaagctAAAG------GCTGGGAACAAATTGCCAAGACATGCACACTGTCCTGAGAAA

a score=36277
s chr3            38557972 890 + 160039680 tccTGTTTCGAAAAGCTTTATTTTTACTT-GGTCCAGGACTTGGGAGAGG-CTCTAGGGCAGTTAGTTACAAAGCTGCCTGAGTGGCTTGAGAGGTTCATTCAGGTGGAGGTCCTGAGGCTGGCTGGTGCAAAG----------------CAGAGTAGGGAGTCTCTTGGAAGTCATGCTGGAGTG--AGGCGATCAAAGAGATACTCACCCAGAGATGCCTGGAGCACACCAGTCTGTGCTGCTTGTGGCCCTGTCAGCCTACGGAGGTTGGTCAGGTGGTTGGCCATCTT---GATGAGCTTCACCTCCTTAACCAGGAAGTGGCTTTCCAAGAAGTCACAGAGATGAG--TCTGTGTGGGCAGAACCCAGGGCATGCAGATCCAAGAGGGCCTAGTTCAGGTTCTTCTCCAGGGCCAAGGCAGTTCCCATGACCTCCTGGGTTTTACCCCATTCATCTTGAGACGACTTCTGCACATCCTGGAAGAGTGCACGGCCTCCACGATCGATCATTCTGCAACTTGAGCAGAAGCTCAGCGCCCTCGCTCTTCTCCTTGGCCAATTCACAGAAG---TGGTCTACGCCCTCCAAAGCCACGTCATCCTGATCAAAAAGGAAGCCCAGAGAGAGGTAGGTGTAGGAGGCCCGCAGATGCACGTG-ACCAGGTGGTTCATGGCAGTTTCCACTTCGGTGGAATAATTCTGATGATCCTGAGAGGTCATGGCTGATCAGGAGTATGGTGATAACCATAAA--GACGTTACAGGCTGATCCC---AGGGGCCGAAGGCAACAAGGAGATGGTCCCGGAGGCTGCGACTGGAGAGACTTGTAAGGTGGCTGGAAGCT---------------AAGAAAGTGGGAGTCCCTGGGTCTGTTCTGTACAAACACTGTT-------------GATCCACGGGACCTCCAAGGCGCTCTTCTC
s HiC_scaffold_1 207560232 902 + 233722169 ttttgctgtgaaaggctttatttttcttttggtccaAGATTTGGGAGGGGACTCCAAAGAGGTGAA----AAAACTGCCT-AGTGGCTGGAGGGAGAGGGTCCAGCCAAAGCCCTGATGCCAG-TGATGCTGGAGCCCCTCAGATACTGCCAGGCTCTGGGGCCTCCT---AGTCGTGCTTAAGTGTGAGCCTTTCAAAGAGGTACtcgcccagcccagcctgg------------------------ggaccGTCTAACCTGCGGAGGTTAGTGAGGTGGTCACCTATCTTCTTGATGAGCTTCACTTCCTCATCTAGGAAGTGGTTCTCCAGAAAATCACAGACATGAGGGTCTGTCTTGGCAGAGCCCAAGGCATGGAGATCCAGAAGAGCTTGGTTCAGGCTCTTCTCCAGGGTCAGAGCCGCTTCCATAGCATCAAGGGTCTTACCCCACTCATCCTCAGAAGGCTTCTGCACGTCCTGGAAGAGCGCGCGGCCGCCGCGCTGG----TTTTGCATTTTCAGGAGGCGCTCGGCACCCTCACGTTTCTCCTTGGCCAGCTCACGGAAGAAATGGCCCACGCCCGCCAAAGCCACATCGTCGCGGTCGAAATAGTAGCCCAGAGAGAGGTAGGTGTAGGAGGCCTGCAAGTGCAGGTTCACCAAGCGGTTGACGGCAGCCTCCACCTCGGTGGAATAATTCTGACGAATCTGAGAGGTCATTGCTGATCAGCGGGAAGGAGCTACCCACAAAAGAACGGTGTAGGCTGGCCCTGGAAGGAGCAGATGGT--CGAGAAGATGGTCCCAAAATTTGTACCTGGAGA----------GTGGatgggagatttaaaaaaaaaaaaaaaaaaaaaaggagtcccCGGGTCTGTTCCGTCCAAACACTGTTGAAGCAAGAGACAGATCCGCGGGACCTCC-GGACGCGCTgctc

a score=8350
s chr3            38634411 300 + 160039680 TCCCTACTCTAAAAATCCAAAATCTGAAATACTCTAAAATTTAAATGTTATTGAACATGGACATGTGGTCACAAGTGAAAAATTGTAGACCCGG--------GACAGGCTGAAGTCAAAAGCTGGTGTGTTAAACAGTTTGTATCAAATTGCCTTCAGGATTTGCGAGTAAACAGTCTATGAAACACAAATAACAGTGTGTGATGTTTAGACTAGACTCCTACTTTCAAGATGTCTCATGTTG--AACATGCAGACATTTCG-------------------CAGACTAGAAGCACTTGCGATGCCTAGCTCTTCAG--TAAGGGATTCTCA
s HiC_scaffold_1 220337539 317 + 233722169 TTCTTGATCTGAAAATCTAAAACATGAAGTGTTCCAAACTGTAAATAGTTTTGATCACTGGCATGATGCCACAAGTGAAAAATTCCATACCTGGCCTTATGTGATGGATTACAGTCAAAA---------TTAAACCA-TTgtgtaaaattaccttcaggcctTGTGTGTAAAGTgtacatgaaatataaatga----atttcatgtttagatttGAGTCTCATCCCTAAAGTAGCTCATCATGTATACATACAGATATTCCtgactctttttaaaaactactaaatTAGAAGTATTTTTGTTGccaagcattttaaataaaaggatgCTCA

a score=5059
s chr3            38888331 1755 + 160039680 TGGCCAGCTTGGTGATTTTTGTCAATGACATCAATGATCACCCTCCGGTCTTTGAGCAGCAAGTATACAGAGTGAACCTGAGCGAGGAGGTGCCTCCGGGGAGCTACGTGAGTGGGG-----TGTC--GGCCACCGATGGCGACTCTGGTCTGAATGCTAACCTGCGTTACAGCATTGTCTCCGGAAATGGGTTGGGCTGG-------------TTTCACATTAGTGAGCACAGTGGACTGGTGACTACCAGTGCTGCCGGGGGCCTTGACCGTGAACTTGCTTCCCAGATTGTACTAAATATTAGTGCCCGAGACCAGG----GGGTCCACCCCAAGGTATCCTATGCCCAGCTTGTGGTAACTGTCCTGGATGTCAATGATGAAAAGCCGGTGTTTAGCCAGCCTGAAGGTTATGAGGTGTCTGTGGTTGAAAATGCTCCAACTGGGACAGAGTTGCTGGTTCTCGGGGCAACAGACAGGGATCTGGGTGACAATGGGACAGTGCGCT-TCTCCCTGCAAGAGGCAGAGAATGACCAAAGGCTCTTCCGCCTGGATCCGGTATCTGGGAGGCTGAGCACTGCCTCCTCCCTGGAC--AGAGAGGAACAAGCCTTCTACTGTCTATCGATTCTAGCCACAGAC------CTGGGTTCCCCTCCCCAGTCGTCCACAGCTCAGGTAAATGTCAGTCTTCTGGATATAAACGATAACAGCCCTGTGTTCTACCCAGTCCAATACTTTGCTCATATCCAGGAAAATGAGCCTGGAGG-TAGCTATGTCACCACAGTGTCTGCTACCGACCCAGACATGGGTCCCAACGGAACTGTTAAGTACAGTATATCAGCTG--GGGACAGGTCTCGGTTTCAGATTCA-----TGCGAAGAGTGGGGTCATTTCTACAAAAATGGCCCTAGATAGAGAAGAGAAAACAGCATACCAGCTGCAAGTAGTGGCCACAGATGGGGGCAATCTACAGTCTCCCAACCAGGCCATCGTAACTGTCACAGTGTTAGACACACAAGACAA----CCCACCTGTGTTCAGCCAGGCTGCCTACAGCTTTGTGG-TCTTTGAGAACGTGGCTCTGGGGTATCATGTG--GGCAGTGTTTCTGCAACTACAATGGACCTCAATGCCAA------CATCAGTTATCTCATCACTACCGGGGACCAGCGAGGGATGTTTGCTATGAATCCTGTCACAG-GGCAGCTGACCACAGCAAGTGTCATTGACAGGGAAGAACAGTCCTTTTATCAGCTGAAAATAGTGGC--------------------CAGTGGGGGAGCCGTCACGGGAGACACTGTGGTTAACATCACAGTGAAAGATTTGAACGACAACGCCCCCC---------------ACTTCCTCCAGGCAGTGGAAAGCATAAATGCTGTGGAGAACTGGCAGGCGGGACACAGCA-TCTTCCAGGCCAAAGCCGTGGACCCGGATGAGGGTGTCAACGGTAGGGTGCTCTATAGTCTG--AAGCAGAACCCCAAGAACCTGTTTACTATTAATG-----AGCAGAATGGTAAC------------ATTAGTCTGCTGGGGGCCCTAGATGTC---CACGCTGGCTCATACCAGGTAGAAATCGTGGCCTCTGATATGGGTGTCCCTCAGCTGTCCTCCAGTATCCTTCTGACAGTTTACGTGCATGATGTAAATGACAA--CCCACCAGTGTTTGATCAGATTTCCTACGAGGTCACACTCTCCGAGTCAGAGCCTGTGAATTCTCGATTCTTCAAGGTACAAGCTTCAGACAAAGATTCTGGAGCAAATGGGGAAATAGCATACACGATCACAGATGGGAACAACGGGGATG
s HiC_scaffold_1 114688039 1770 + 233722169 TGGCCACACTCACCATCTTAGTCACTGACACCAATGATCATGATCCTGTTTTTGAGCAGCAGGAATACAAAGAAAGCCTCAGAGAGAA-------CCTGGAGGTTGGCTATGAGGTACTCACTGTCAGAGCCACGGATGGTGATGCCCCTCCCAATGCTAACATTCTGTACCGCCT----GCTGGAGGGGTCTGGGGGTGGCCCCTCGGAAGTCTTTGAGATTGACCCTCGCTCTGGGGTGATCCGGACCCGTGGCCCTGTGGATCGGGAAGAAGTAGAATCCTACAAGTTAATAGTGGAAGCAAGTGACCAGGGTCGGGACCCAGGTCCA---CGAGGTGCGACAGCTGCTGTTT-TCCTGTCTGTTGAGGATGACAATGACAATGCTCCTCAGTTTAGTGAA---AAGCGTTATATCGTCCAGGTGCGGGAGGACGTGGCCCCAGGGGCTCCCATACTTCGAATCACAGCCTCGGATCGGGACAAGGGCAGCAATGCCTTAGTACACTATAGCATCATGAGTGGC----AATGCTCGTGGACAGTTTTATCTGGATGCTCAGACTGGGGCTCTGGATGTGGTAAGCCCTCTTGACTATGAGACAACCAAAGAATATACGTT---GCGGGTCCGGGCACAGGATGGTGGCCGGCCCCCACTCTCCAA-CGTCTCTGGCTT-GGTAACAGTGCAAGTCCTGGATATCAATGATAATGCCCCCATCTTCGTCAGCACCCCCTTCCAGGCCACTGTACTGGAGAGTGTCCCCTTAGGCTACCTGGTTCTCCAC-GTCCAGGCTATCGATGCTGATGCCGGTGACAATGCCCGCCTGGAATATCGTCTTGCTGGTGTTGGGCATGATTTCCCTTTCACCATCAACAATGGCACAGGCTGG----ATCTCCGTGGCTGCTGAGCTGGACCGAGAGGAGGTTGATTTCTACAGCTTTGGGGTAGAAGCCCGAGATCATGGTACCCCCCCACTCACTGCCTCAGCCAGTGTCAGTGTGACCATTTTAGATGTTAACGATAACAATCCAACCTTTACCCAACCAGAGTAC--ACAG---TGCGGCTCAATGAGGATGCAGCTGTGGGCACCAGTGTGGTGACAGTGT--------CGGCTGTGGACCGTGATGCCCACAGTGTCATCACTTACCAGATCACTAGTGGAAACACCCGAAACCGTTTCTCCATCA--CTAGCCAAAGTGGTGGTGGACTGGTATCCCTCGCCTTGCCGCTGGACTACAAAC--TTGAGCGGCAGTATGTACTGGCTGTCACTGCCTCTGATGGCACAAGGCAGGA-----CACGGCACAGATTGTGGTGAACGTCACCG------------ATGCCAACACCCACCGTCCCGTCTTTCAGAGCTCCCACTATACGGTG---------AACGTTAATGAGGACCGGCCAGCAGG-CACTACAGTAGTGCTGATCAGTGCTACAGATGAGGATACAGGTGAGAATGCTCGAATTACCTACTTTATGGAAGACAGTATCCC-----CCAATTCCGCATCGATGCAGACACCGGGGCGGTCACTACCCAGGCTGAGTTAGACTA-TGAAGACC--AGGTGTCTTACACCCTGGCC--------------ATCACTGCCCGTGACAATGGCATTCCCCAGAAGTCTGACACCACCTACCTGGAAATCCTAGTGAATGATGTGAATGACAATGCCCCTCAGTTTCTG--CGGGATTCCTACCAGGGTAGCGTCTATGAGGATGTGCCTCCTTTCACTAGTGTCTTGCAGATCTCAGCCACTGATCGTGACTCTGGCCTTAATGGCCGAGTCTTCTATACCTTCCAAGGAGGTGATGATGGAGATG

a score=4554
s chr3            38957082 263 + 160039680 GAGCTGGACAGAGAGGAAGTTTCCAATTACAGCCTGACAGTGGTGGCCACAGACAAAGGGCAGCCACCTCTGTCGTCCTCTACTGAGGTTGTGGTTATGGTCCTTGACATCAATGATAACAACCCTGTTTTTGCTCAGGCTATGTACCGAGTGCAGATTAAGGAGAACATACTCACTGGAACAGATATAATCCAAGTGTCTGCAGCAGACAATGATGAAGGTACCAACGGACAGGTTCGCTACGGCATCGTGGGTGGAAACAC
s HiC_scaffold_1 114688923 257 + 233722169 GAGCTGGACCGAGAGGAGGTTGATTTCTACAGCTTTGGGGTAGAAGCCCGAGATCATGGTACCCCCCCACTCACTGCCTCAGCCAGTGTCAGTGTGACCATTTTAGATGTTAACGATAACAATCCAACCTTTACCCAACCAGAGTACACAGTGCGGCTCAATGAGGATGCAGCTGTGGGCACCAGTGTGGTGACAGTGTCGGCTGTGGACCGTGATG------CCCACAGTGTCATCACTTACCAGATCACTAGTGGAAACAC

a score=4063
s chr3            38981537 371 + 160039680 TCTCTGCCAGAGATCGTGACACCGCCATGAATGGTCTGATCAGTTACAACATTATTTCGGGGA-------ATGAAGAGGGCATCTTTGCAATCAATTCCTCAACAGGTGTGGTA---ACCCTAGCCAAAGCCCTTGATTATGAGA-TG-AGCTCAAAGCACGAGATGACCATTAGTGCCACAGATG-GAGGATGGGTTGCGAGGAC-TGGCTACTGCAGCCTGACTGTGAGTGTGATCGATGTGAATGACAATTCCCCAGTGTTTGTTCCTGATGAATTTTTCCCAACTGTTATGGAGAACGCCCCAAGTGGGACCACTGTTATCCACCTAAACGCAACAGACGCTGACTCGGGAGCCAATGCTGTGATTGCGTAC---ACTGTGCAG
s HiC_scaffold_1 114689734 377 + 233722169 TCTCAGCCACTGATCGTGACTCTGGCCTTAATGGCCGAGTCTTCTATACC----TTCCAAGGAGGTGATGATGGAGATGGTGACTTTATTGTAGAGTCTACATCAGGCATTGTACGGACGCTA--CGGAGGC-TGGATCGTGAGAATGTGGCCCAGTACAGCTTGCGAGCAT--ATGCAGTAGACAAGGGGATGCCCCCCGCCCGCACATCCATGGAAG--TGACGGTCACTGTACTGGATGTGAATGACAATCCACCTGTCTTTGAGCAGGATGAGTTTGATGTGTTTGTGGAAGAAAACAGCCCCATTGGGCTAGCTGTGGCCCGGGTCACAGCCACTGACCCCGATGAAGGCACCAATGCTCAGATCATGTACCAGATTGTGGAG

a score=4011
s chr3            38983735 172 + 160039680 CAGCCTTCCCAGTGCAAGTGTGTGCCAGGCTATGCTGGAAGCTGGTGCGAGGTGGATATTGATGAATGCCTCCCAGC--CCCTTGCCACAATGGGGGCACCTGCCACAACTTAGTTGGGGGATTTTCATGCAGCTGCCCAGAGGGCTTCACTGGGAGAGCCTGTGAGAGAGACA
s HiC_scaffold_1 194645108 168 + 233722169 CGGCCTTT----TGCGACTGCCTGCCCGGCTTCCAGGGCGCCTTCTGCGAGGAGGACATCAACGAGTG--TGCCAGCAGCCCCTGCCGCAACGGTGCCAACTGCACTGACTGTGTGGATAGCTACACGTGCACCTGCCCTGCGGGCTTCAACGGCATCCACTGCGAGAACAACA

a score=4693
s chr3            38983741 155 + 160039680 TCCCAGTGCAAGTGTGTGCCAGGCTATGCTGGAAGCTGGTGCGAGGTGGATATTGATGAATGC-CTCCCAGCCCCTTGCCACAATGGGGGCACCTGCCACAACTTAGTTGGGGGATTTTCATGCAGCTGCCCAGAGGGCTTCACTGGGAGAGCCTG
s HiC_scaffold_1 183249844 155 + 233722169 TTCCAATGCTACTGCGTGCCGGGTTTCCAGGGTCCCCACTGTGAGCTGGACATCGATGAGTGTGCGTCCAGGCCCT-GCCACCATGGGGCCACCTGCCACAACCTGGCTGATCGCTTCGAGTGCCGCTGCCCCCTCGGCTATGCAGGTAATGTCTG

a score=4022
s chr3            38983771 171 + 160039680 GGAAGCTGGTGCGAGGTGGATATTGATGAATGCCTCCCAGCCCCTTGCCACAATGGGGGCACCTGCCACAACTTAGTTGGGGGATTTTCATGCAGCTGCCCAGAGGGCTTCACTGGGAGAGCCTGTGAGAGAGACATCAATGAATGTTTGCCCAGCCCTTGCAAGCATGGG
s HiC_scaffold_1 194641513 171 + 233722169 GGCAGCATGTGCAATATCAACATCGACGAGTGTGCGGGGAGCCCCTGCCACAATGGGGGCACCTGCGAGGACGGCATCAACAGCTTCACCTGCCGCTGCCCCGAGGGCTACCATGACCCCACTTGCTTGTCTGAGGTCAATGAGTGCAGCAGCAACCCCTGCATACACGGG

a score=4450
s chr3            38983780 226 + 160039680 TGCGAGGTGGATATTGATGAATGC----------------------CTCCCAGCCCC--TTGCCACAATGGGGGCACCTGCCACAACTTAGTTGGGGGATTTTCATGCAGCTGCCCAGAGGGCTTCACTGGGAGAGCC-TGTGAGAGAGACATCAATGAATGTTTGCCCAGCCCTTGCAA----------GCATGGGGCCGTCTGTCAAAATTTCCCAGGGGGATTCAACTGCGTGTGCAAAACTGGATACACAGGTACGT
s HiC_scaffold_1 194647090 256 + 233722169 TGCGAGATCAATGTGGATGACTGCAGCCCGCTCCACGACCTGGCCTCCCGCAGTCCCAAGTGCTTCAATAACGGCACCTGCGTGGACCAGGTGGGTGGCTATACCTGCACCTGCCCGCCTGGCTTTG-TAGGCGAGCGGTGCGAGGGTGACGTCAATGAGTGCCTGTCCAACCCTTGCGACGCCCGCGGCACCCAGAACTGCGTG-CAACGTGTC---AACGACTTCCACTGCGAGTGCCGGGCGGGACATACCGGTAGGT

a score=4223
s chr3            38983861 107 + 160039680 TGCAGCTGCCCAGAGGGCTTCACTGGGAGAGCCTGTGAGAGAGACATCAATGAATGTTTGCCCAGCCCTTGCAAGCATGGGGCCGTCTGTCAAAATTTCCCAGGGGG
s HiC_scaffold_1 194646423 107 + 233722169 TGCCGCTGCCAGGCTGGCTACACGGGCAGCTACTGCGAGGAGGAGGTGGACGAGTGTTCACCCAGCCCCTGCCAGAATGGGGCCACCTGTACAGACTACCTGGGTGG

a score=3689
s chr3            38983893 110 + 160039680 CTGTGAGAGAGACATCAATGAATGTTTGCCCAGCCCTTGCAAGCATGGGGCCGTCTGTCAAAATTTCCCAGGGGGATTCAACTGCGTGTGCAAAACTGGATACACAGGTA
s HiC_scaffold_1 183249882 110 + 233722169 CTGTGAGCTGGACATCGATGAGTGTGCGTCCAGGCCCTGCCACCATGGGGCCACCTGCCACAACCTGGCTGATCGCTTCGAGTGCCGCTGCCCCCTCGGCTATGCAGGTA

a score=13944
s chr3           39217560 286 + 160039680 TTCCCAGAGACCACATGCTTGCCATCCAGCCATTCAGTCTTGGCAGTGCAGATAAAAGACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATCCTCAAATTTCTCTCGTAGCTGGACCTGCCGCCAGTGCCATTATGGCATGTAAACTCAGCACCCTGGCACATGAATCCTGGAATAATTCTGTGAAAGGAGGAACCCTTATAGCCAAATCCTTTCTCTCCAGTGCTCAAGGTGAAAGA
s HiC_scaffold_1 72460963 280 + 233722169 TTCCTGAAGAACATGAGCTTGCTTTCCAACCTCTTGCTTTTGGTAATGCAGATGAAAAACTGA-AACCCTTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCA---CTGAATTTCTCCTATAGAC--ACTTGCCACCAGTGGCACTGTGGCCTGTGACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAACCTAatgttttctctccagtgttcacagcaaaaaa

a score=5463
s chr3            39217563 181 + 160039680 CCAGAGACCACATGCTTGCCATCCAGCCATTCAGTCTTGGCA-GTGCAGATAAAAGACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATCCTCAAATTTCTC-TCGTAGCTGGACCTGCCGCCAGTGCCATTATG
s HiC_scaffold_1 155171621 183 + 233722169 CTAAATACCACATGTTTAAGATCCAAATGTTCTGCCTCATTTTGTGTTATGAAAAAACTGAGAATTATTCATATCCCATCCTCAACTGGACATAGATAAGAAGCCAGGGTCAGTGTGCCTTACATTAAAGTTTTCATCTTGAAATTTATCTTCATAAATGGACTTTCCTCCTGTCCCATCATG

a score=5916
s chr3            39926369 146 + 160039680 CCCTGGCAAGGGGCAAAGAGACACCTTTGTGGTGGTG--------------GTCAGGAGCAGAGCAGATGGCAGTCCTTTGTTCATTCTAGCTTGATGTCCCGGGTTGA----------TGCTTTATGCCTAGGAGTCAT----AAaaatcaaatcaaatcaaatcaaatcaaa
s HiC_scaffold_1 195809930 172 + 233722169 CCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATG--CCTGTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggcaataagagcaaa

a score=4494
s chr3            40135537 150 + 160039680 GTTAGGATTTAACCATGAATTCTCTTCTGAGAGGCTCATGTGTTTCACCTATGGCGCTCAGTGCAGCTGTGCTCAAAG-CTGAGGCTGTGAAGAAGTAAATGTGTCATAAGAGCAGTGACTTTGTCAATGGATTTATTCCTTTATAGAGTC
s HiC_scaffold_1 103515868 143 + 233722169 GTTTGGATTTGA-----AATGCTCTCC--AAAAGCTCATATATTTAAGACTTGGTCTTCAATGTAGCAATGTTCAGAGGCAGAGACTCTGGAACA-TGAATGAAGCAGAAGCTCTCTGACTTCGTTAATGGATTGACTCATTTATAGAGTC

a score=5375
s chr3            40150542 178 + 160039680 AAAATACATCAAGCCCACCATACTGTTCCTTCATGCTTAATCTTCCATCCACTGAACATTGAACACAAGTTTTCACAAAAATATCATTTGATCTAGAAAGATCTGCCAGAGACTGGAACACATT---CTCTAGTCTTAA-TTGAAGCTTAGTATAAATATCAACTCAAGTTTTCCCAGAGAT
s HiC_scaffold_1 103909523 179 + 233722169 aacacagaGCAAATCAATTGAACTGTCCTTTCATGTTGCATCTTTCAACAGCTGAATATTCTATATGGCATTTCACAGAAATATGATTTGATTTGAGAACATCTGCAGCAGTCTGGAACACATTTTCCCCTGTACTTGACTTTTAGCTCATTATAGCTCTCAGAT---GTTCTCTCAGCAAT

a score=5399
s chr3            40539109 286 + 160039680 CCGTCTGACAGTAGGCTATAAGGCACTTGTCATCTCAGAGGGGTCATGCCTCATCCCCAGGAGAAAGAAATGCAAAAGAATAGATACACACAGGCATTATTGAGTCTTCCCACTCAGCCTGTTAGCAGTCTGGCCTAT---GTGA---CTCCG------TTTCTAAA-----Aggttcagagagcctccagatctatgagtacatggagggacttggagagagaccactgacaaaagccactgagacaccatcc---cttctcccata----cctcccctgtgaatcttttggtctatattctttgtaat
s HiC_scaffold_1 161501129 302 + 233722169 CCATCCAGTAATAGGTCATAGAACCTTCCTCATTCCACATGGCTC-TACTCCATAATCATGAGGAAGGAATGCTAAAGAATCTGAACAGACAGGCTTTGCTGGGGTTTCCCGCCCAGTCTATCAGCAGTCACACCTATACAGTGAAATTTCCATAAAATTCTCCAAAGGACCAGATTCAAAGAGTTTCTGTTCACCTGAACACATGGAAG--CTCACAGCAAGGTGA---AGAAGATTCACTCATACACCTTCTAGACCTTGCCCGGAGTACCCTCTTACCTGA--CTTCTTATATATGTCCTTTAAAAT

a score=6408
s chr3           41343994 161 + 160039680 GGGTCACTTAGACAAAAGTGGTCTCATAAAATTACAATGGAGCTGAAAACAATTCCTATCATCTAATGACATCACAGCCATTGCAACCCTGTAACACAAGACATTATGCACCTACTTATAGTGTTGCTGCAAAC--AGACCTGTGCTGCCAGT--TGCATAAATA
s HiC_scaffold_1 51370305 163 + 233722169 GGGTCACATATATGATGGTGCCCCCATAGGATTATAACAGAGCC--AAACAATTCCTATCACTTAGTGATATCATAGCTATCTTAATGTCATAGCACAAGGCATTCCTTGCCTGCTTGTGGCATTGATACAAACTATGTACTGTACTACCAGTGGTGTATAAATA

a score=9323
s chr3           41485824 326 + 160039680 CGGGAAACTTTCATGC--TCTGAGCACTGGAGAGAAAGGATTTTACTAGAAGGGTTCCTCCTTTCACAGAATTATTCCAGGATTCATGTGCCAGGGTGGTGACTTTACATGCCATAATGGCACTGGCGGCAGATCCATCTATGGAGAGAAATTTGAGGATGAGATCTTCATCCTGAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATACTGGACCAACACAAACGGTTCCCAGTTTTTTATCTGCACTGCCAAGACTAAGTGGCTGGATGGCAAGCATGTGGTGTCTGGG------AAGGTGAAAGAAGGCATGAACATTGTGGAAGCCA
s HiC_scaffold_1 82427398 318 + 233722169 CGGGAGACTTTC-TGCAGCCTGAGTGCCCACGGAAAAGGCTATGGCTTCAGGGGAAGTAGCTTCCACCGCAACATCCACCAGTTCATGTGCCAGGGTGGGAATTTCACAAACCACAGTGCCACTGG-GGCAAGTCCATCTCCTGGAAGACGTTTGATGACGAAAACTTTATCCTTAAACACACAGGACTAGACCTCCTCGCCATGGC----------CAAATAGCAACGGCTCCCAGTTCTTCCAGACCTCTGACAAGACAGACAGGCTGAAGGGCAAGCATATGGTGTTTGGGCCGATTGAGGTCCAGGGCAGCAAGGACG----GGAAACCA

a score=5705
s chr3            41861219 139 + 160039680 AAATA-AAATTGCAAAGCCTG------ACAGTGAAGAATACAGAGAGGAATTCAAGTGACTAAACCTCAAATAAAGGATTATCCTTGTTTGTGAGAAATCTATTCCAGTAAGAAATCGATGCAGCAGCCTCTGCA--TAGAGAAGCAG
s HiC_scaffold_1 141918516 148 + 233722169 aaatagaaactgCACAGTCTGTTGTGGGAAGCGTGGAAAACAGCAAGTCAACCAAGTGAGTAAACATGAAATGGAGGATTATCCATATTTGTGAAGAATCCATTCCAGCAAGAAATTGAATCAGGGGCTTCTGTATCTAAAGCAGTAG

a score=11720
s chr3            41976248 510 + 160039680 CCAGCACTCTGGTACAGCTTGATAATGATAGGGTTGCAGACTTTCCCCAGTTCTTTCTGCTGATGCTCAAATTCTTCCTTCTCTGCAGTCTGGTTCTTATCCAGCCAGCTGATGATTTCATT----GCACTTGTCAAGAATCTTCTGTTTGCCCTCACATTGATCTTGCCTTGAAGTTTCTCATCTTCCACAGT-TGCTTTCATGTTGA--AGGCATAGGACTCCAGTGAGTTCTTGGAGGAAACCTTATCTCTCTGCTTCTCATCCTCAGCTTTGTACTTCTCAGCTTCTTGGACCACTCACTCAATATCTTCCTTACTCAAGCGGCCCTTGTCATTGGTGATGGTGATCTCCTTTT-----CCCATGCTCTTATATACAGCAGAAACATTGAGGATACCATTGGCATTGATGTCAAAAGTAACCTCAATCTGAGGAACCCCACGGGTTGCTGGAGGGATACCCGTGAGGTCAAACTTTCCAAGCAGGTTGTTGTCCTTGGTCATAGTCCTTTCTCCTTCA
s HiC_scaffold_1 184779870 519 + 233722169 CCTGCACTTCCATAGAGTTTGCTGATGATTGGCTGAACGATTTCTTCTAATTCCTTCTTCTTTGCTTTGAAGTCTTCAATGTCAGCATCTTGGTGGCTTTCCAGCCATTCAATCTTGTCCTCTACAGCTTTTTCCATGGTTTCCTTGTCTTCCGAGGAA---AGTTTGCCTCCCAGCTTTTCTTTATCTCCAATCTGGTTCTTTAGAGAGTAGGCGTAGCTTTCCAGCTCATTCCGGGTGTCTATGCGCTCCTTGAGCTTTTTGTCTTCctcagcaaacttctcagcatcATTGACCATCCTTTCGATCTCTTCAGGTGTTAGGCGATTTTGGTCATTGGTGATTGTGATCTTATTTTTGTTCCCTGTACCCTTGTCTTCAGCTGTCACCCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGGGGGACCCCACGGGGAGCAGGAGGAATTCCAGTCAGGTCAAATGTACCCAGGAGGTGATTGTCTTTCGTCAGAGGTCGCTCACCTACa

a score=16665
s chr3            41976941 703 + 160039680 CCAGATAGAATGGCTGCCTGGACAGTTGCACCATAGGCAGCAGCTTCATCAGGGTTAATGCTCTTGTTCAGTTATTTTCCATTGAAGAAGTCTTGCAGAAGTTTCTGAATCTTGGAGATTCTGGTAGAACCACCCACCAAGAAAATATCATGGATCTGTAACTTGTCTAGTTTGGCATCTCCaagggccttctctacagggtccagtgtgccacggaacaggtc---------------------------------------------------------------------------------------------------------------------------------------------agca-------ttcaattcctcaga----------------------------tcaatttcctcatagagagaatcaatctcaatattggccTGGGTGCTG-GAGGAGAGGGTGTGCTTGTTCCGCTCATAGGCTGTGT-GGAGATGGCAGACAGCTCTCTTGTTCTCACTGATGTCCTTCT---TGTTCTTTCACTAAAACTTGGCAATGAAATGGTTGACCATTTGGTTGTCAAAATCTTTTCCACCTAAGTGTGTGTCTCCAGCTGTTGATTTGACTTAAAAAATTACATCCTCAATAGTGAGGGCTGACACATCAAAAGTGCCACCTCCCAAGTCAAAAATCAGCATATTTCTTTCAGCTCCCACCTTCTTATCTAAGCCATAAGCAATAGCAGCAGCAGT---------------------------------------------------------------------------------------TGGTTCATTGATGACTTGAAGAACATTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGCCACTGGGAGTCATTGAAGTAAGCTGGCACTGTGACCACCACATTGGTAAC
s HiC_scaffold_1 184781631 963 + 233722169 CCAGAGAGTACACCTGCCTGGACAGCAGCACCATAGGCTACAGCCTCATCTGGGTTTATGCCTCGGGATGGCTCCTTGCCATTGAAGAACTCTTTAACCAGTTGCTGGATCTTGGGAATTCGAGTGGAGCCACCAACAAGAACAATCTCATCAATATCAGACTTCTTCAAGTCAGAGTCTTCCAACACTTTCTGGACAGGTTTCATGGTAGAGCGGAACAGGTCCTAGAATAAAGACATATGGTCACTGTGATGATAACTGTTACCTTGGTACTGTCTGGGTCTGTATGTACACTGTCTTAAATTCAGTGAATTTAACTACATTTCAttaggacagaaaaagaaaaaaaaaaaaaaaaatcaaggaacatACCATGTTTAGTTCTTCAAATTTGGCCCGAGTCAGAGTCTCAGAAAAGTCTTCTCCTTCATAGAAAGATTCAATTTCAATTCTTGCCT-GATGCTGAGAAGATAGGGCCCTCTTGGCCTTTTC-TACCTCACGTCGGAGTTTCTGCACAGCTCTGTTGTCCTTCCTCACATCTTTGCCAGTCTTCTTTTTGTACAGCTTG---ATGAAGTGTTCCATGACACGCTGGTCAAAGTCCTCTCCACCCAGGTGAGTATCTCCATTAGTGGCCACGACTTCGAAGACACCATTGTCGATGGTGAGAAGAGATACATCGAAGGTTCCACCACCCAGGTCAAACACCAGGATGTtcttct---ccccctctctcttATCCAGGCCATAAGCAATGGCAGCTGCTGTCCTGTTAGAATGAAAAGGGACATCTCAGTCAAATCCACAATTCCCCTACTGGGTAAATATGCTGTGTATCCTTGAATTTCATACTTACGGCTCATTGATGATTCTCATAACATTCAGTCCAGCAATTGTTCCAGCATCTTTGGTTGCTTGCCTTTGAGCATCATTAAAGTAGGCAGGTACAGTAACGACTGCATGAGTAAC

a score=3884
s chr3            41977646 88 + 160039680 TCTTTCAGAGGTATGTTTTTGCAATTTCCTTCATCTTTGTCAGAACCATGGAGGACACTTCCTCTGAGTAAAAACTTTTTGTTTCCCC
s HiC_scaffold_1 184783003 88 + 233722169 TCTTTCCCAAATAAGCCTCAGCAGTTTCCTTCATTTTAGTGAGAACCATGGCAGAAATTTCTTCTGGAGCAAAAGTCTTGGTTTGCCC

a score=4165
s chr3            42141011 146 + 160039680 ATGAGACAAAACATATACCATTTGCCCGAGACTGGCTTAATCCCCTTAATGTGACTATTGTCAGTTGTGTTCCTTTTCCCGAAAAAGACATGAT---ATTCTTCTATA--GATATAAAAGTCTCTGCTACCTATATATCCACAGTGCCTTC
s HiC_scaffold_1 179989461 150 + 233722169 ATGAGAGGAAATGTGTAATATTTGGCTGAGTCTGGACTACTTCACTTAATACAATGAATTCCAGTTCCATCCACTTTCCTGAAAATGACCTGATTTCATTCTTCTAtatggttgaataatattccattgtgtatata-ctgcatttccttc

a score=13246
s chr3           42585130 494 + 160039680 AAGGAACAAACTTTCACA--------TTCCTCCCTATTGGCTCTCACAAAATGTGCTCTTTAACGCAAAACTGACTGTCCTTTCATTAGGGGCCAGGTATGTTTTTCTTTGGCTCTGTTCTATTTCTAATTATTTTCTTTGATGCCTTTAAGGAAGCTATCTTGGCTCTTTGAGTGTTTACTATACTCAATAAACATATTAAT-TTTTTGGCTTGAACTTTCCCCTTAACTTGCTTGAACAGAACAATGCCAGTA----CTGGCACCAGTTTGCAGTTGCTCCAAGCTTT---CATAATAATACTTGTCAGGCTTTCCTTTGTAACCAGATCCCTATTCCCTCCATGTCTACAGTACTACTACATTATTTCTCAGAAATCCACATGCATGTGGCCAAAAGAAGAAATCCATGGTTTTTTGTTTGTTTGTTTGTTTTTAAAGAATATAAGCCAAGTGTGGTTTC-----CTTTTCAT-TTCATCATTTAGGTGAGTTACTG----------ATTCTGGTTGAAAGTT
s HiC_scaffold_1 80725762 506 + 233722169 AGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATATAGTAACA--TTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAG-TACCCATTCTTTTGTTGTCTAAAATATCAC------GCTTTTTGTAGATTCACATGTATGTAGCC--AAGAAACAATCCTATGTTTTCTAAAAG---------GCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAAGTT

a score=13064
s chr3            42585143 479 + 160039680 TCACATTCCTCCCTATTGGCTCTCACAAAATGTGCTCTTTAACGCAAAACTGACTGTCCTTTCATTAGGGGCCAGGTATGTTTTTCTTTGGCTCTGTTCTATTTCTAATTATTTTCTTTGATGCCTTTAAGGAAGCTATCTTGGCTCTTTGAGTGTTTACTATACTCAATAAACATATTAAT-TTTTTGGCTTGAACTTTCCCCTTAACTTGCTTGAACAGAACAATGCCA-----GTACTGGCACCAGTTTGCAG----TTGCTCCAAGCTTT--CATAATAATACTTGTCAGGCTTTCCTTTGTAACCAGATCCCTATTCCCTCCATGTCTACAGTACTACTACATTATTTCTCAGAAATCCACATGCATGTGGCCAAAAGAAGAAATCCATGGTTTTTTGTTTGTTTGTTTGTTTTTAAAGAATATAAGCCAAGTGTGG---------------TTTCCTTTTCATTTCATCATTTAGGTGAGTTAC----------TGATTCTGGTTGAAAG
s HiC_scaffold_1 178274494 489 + 233722169 TCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGG-GTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAG-TATCAATTCCCTTGAGGTCTACAATATTACC-Cattttgtat-----atttgtatgtatgtggCCAATGGAGCAACCCCATG-------------------TTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaag

a score=12412
s chr3            43390192 1112 + 160039680 GAAGGAATATGCAAAATACTTCTCTTTGCATCAGCGATCTAGCACCTTGGAGCTCTCCAGAAAAATATGTACCCCTAGTG-TGTTCACTGT----GGTGTGCTTAAAGATCCAC--TCAACATACTTAAAACTACTT-AACTCTGA---ATATCATTCTTATGAG----------ATAATAATTGAGAAAAGCAGAAAA-------CTAGCATACACAATATTACATGTTAATAGAAAAGTTTATATGAAAACACTAAAGAAGTAATTATTTTTTTTTAAATGCAAAGCAGTCCAGTTTATTCCACTAAGCCATGAAGAAAGTCTTGGAGAACGTGGCTTTTTTTGCCAGCCTCCAAACCTGGAAGCTCAAAAATCAATTTTGTCTTCAGCCCGTGAACACTTCTTAGGCCCATAACCAAAAGAACATCATGCCCAAGGGTGCATGAAGAAACACTTTGCAAATACCCGACTTTTACACAAATTTGTGTTGCCAAGTGGGTTCAGCAGATTCCTCTAGGATTATATACTTGTCTTGACTGCTTATAGGCTGCCTGTGAGATTTTGGATTGCAATATCTTAAGCATTTCCA-CAATACTAACCATATCCACTTATGCCATTCTAATCACTGAAGCTGACCCT------------ATAATAGCTTCTC-----ACTGACTGGCTCTGCAGATGACACTCTC----ATGCTCTGGATCACCTGGCTGCTATGAAGCCTGATTACTAACCCCTGTTGTTGAATTCAGGGAGAGAGTTCCATGTGTCTCTGCTGTATGTTGACCCTGTCTT-CAACCTAGCTGCCACTGTTTCTTCACAAGTGGCAAACTCAACACCAGCTTCTCTTGTTGGTCTCCTATCAGGGCCAATCTCAGTAGGAACTATTACATGATTGAGTGGAGAGAAGTTGTAACTTTCATTTTCCATTGCTTTGTAGGGCAGCCCTCTCACGTGTAGGCATGACCTGTGGTGCTCTGCATTGTGAGCTTGCTGTGGTCATAAGTTCTTTAAAGACAGTAGTTGATGTCATAGCCAAAACCAAGGTCACTGTGTTCTTCATAGTCCCCAGAGTCTGCACTATAAACATCAGACTTGATCATACCTAGGCCTGGCTGTTTCATAATGCCAATGCACCTCTGGGCTATGCC
s HiC_scaffold_1 212674973  855 + 233722169 GAACAAATATGAGAAATAGTCCTCTTGGAACTAGGGATCTATCACCTTAGAGTTTTCCAAAATCATTCTTCTCTCCACAGCTGTTCATTGTAGTTGGTGTG---AAGGATTCACATTTGACATACT-AAAACTACTTCAACTCGGGTTGACACCACTCTGAAGTGTACTGTCAACATATGAATTGAGAGAAGTGGGATAAATGGTTTTAGTTTGCTCAATATCACATACTTGATGAAAAGTTTTTGTGTGAA---------------------------AATGCCAAACAGAtcatttta----------------------------------------------------------------------------------------------------------aaatccata----------------------------------------------------------tttCACAAACTCATGGGACACAATACATCCAAAAACTTTCTCTGGAGTTATACACTGCCCTTGCCTACTTATTGGCTGCCTATGAAAACTTG-AttaaaataactcaaatgttcctAACAAAACTATTC---------CATGGTGTCTTGACCACTTTAGCCACCCCTTACAGACACTCAAGAGTTGGTTCTCTAGGCACTGAA-GGTCACGTGGGTGGCCCACTCCTCCATTCCTTGAACTGTCTGGCTGCTCT-AAGCTCTGTTGCTGGCCTCCATTGTTGAATTT--GGAAAGAGTTCTCTGTATCCGTGCTGGACGTTGGCCCCGTCTTTCCACATAGCTGTCA--GTTTCTTGGTGGGTGGCAAACACAACTTCTATTTCCTCTGTCATTCTTTCATCAGGATCAATCCTCT-----ACTCTCACAGGA--------AGAGAAGTAG--------ATGTTCCTGGTGGTTGGAGGGCATCCTCATCATGTGGATGCATGG----------------------------TTTGGTTAT-----------------------------------------------CTCTGCCCATCGTA-TCCCCATATTTTGTACTGCAGGTACCAGATTTCATCCCCTCCAGGGCTCCCTGCTCCACGATGTCAGTGCACCTCTAGGCTGTGTC

a score=34606
s chr3            43926701 1323 + 160039680 TTTTTTTTTTTGCATCAAACATATTCACATTTACTTTCTTTTTTTTTTA------AAGCTTATGACAAAAAAAAAATT-ACCAGCTTATTTTTTAACCTAAGCTTAAAACATTACGTATTTAAACAATAGTCAAA--CTCACGAGGTTGCTGGTATCACTGCACAACTAGAAAATATCCTTCA------------CCAGAAATTTCTTACCATTGATGTAG---TAATAGCTTTTATCAATAAATACTGAAAATAAAATTGAAAT-ATTCCTTAAGATGATTCATC-TGGAAATATTAACTTCAGGGCAGGCTGACACTA--CTCACAATTCAC-CACAACGGGAAGCAGATGCATGCTGGTGTTAAA-CACATTCTCATCCTAGAATTATTCAAGAGTCACAGGGTTCACGTCAGATTATGATTTGTTTAAAACAAAGCAAAGTACATACAAAGATTACAACAATTTTTATTTGTttttgtttttctagacagggcttctctgtgtagccctggctgtcctggaactaactctgtaaaccaggctgtcctggaactcagaaatctgcctgcctctgcttcccaaatgctgggattaaaggtgtgcggcaccaGATTACAACAATTTTaaagacaaaaacaagaaaaaagagaaagaaaaagaaagaaaaaTCCTATTTTGTGGTCCCAACAACCAACTCGAAAATCT--GACAAATGGGGGCGCCTATGAGTTGTTTTATAAATACTTTAGATTAGGTACAGGTA----TACTGAAAGACGAGTACATTTGAAATCTTCCAAAAAAAGGAAAATGTTCCGGTCATTCCTCAAATGATGCTTGCTTATGGTTTAACTTTTTTTtt-------------------------------------------------------tctttttaggcatttttattagatattctcttca---------------------------------------------------------tttacattt------------------------------------------------------------------------------------------------------------------caaatgc--------tatctccaaag------------------------------------------------------------ccccct-------------------------------------aGCCAAATGAAAATGAGTCCCTTCCACCAAAAAATTCCCTGAAGACCTCATCTGGGTTCTAGAATCTGAAGCTAAACTCAAATAGAATGTCAAAATGACTTACTTCCACCTCCTCCACCACCACCATTTAA----TCTTTGCTATATTTGTTTTTCTTAGATGTCCCACTATTTAGCATATGATACCACTTCATATGACTCAG-TACTTGTTGGAATTTCTGCTCTGCTTCTTTTTTTTTTTTTATTTTCAGGATTTTTGTCCGGGTGCCATTTAAGTGATTGTTTTCGATATGCCTTTTTAATTTCTTCA-GGTAGGCATGTCTCTGCACATGTAGAACCTCATAGTAATCCATCAGGTTTTAACAGACTATTGGAACAAATCCGAAGACA--------CAGTGGCCAAAGAGAGGGCAAGTTGGGCAGCCAGTCTCCTC
s HiC_scaffold_1 127993262 1466 + 233722169 tttttttttttgcaccaaacacattcacatttcttttctttttttttttttttttaagcaaatgaCAAAGACCCAGTTTACCAGTTT--TTATAAACCTAAGCTTAA--CATTACACATTTAAACAATTGTCAAAACTTTACTAAGTTGCCAGCATCCATGCACAACTAGAAAACATCCTTAAATTCGTATTGAACCAGAAATGTATTACCATTAATGCTGCATTAATATCTGTCATTActaaatactgaaga--aaatggaaattatttctgTGGAGGACTCATCCTGGCCATGTTAGCTTTACAGCAGGCGGACACAAAGCATACATTTCACACACAATGGAAAACAGATCCATGCTGGTGTTAGAGTATAGTCTCCTCCTAGTGCTACTCAAGAGTCA--GGCTTACCCTTGGATCACgtttaat----aaaaaagcaaagtgcaTACAGAGATTAcaacaatttt---------------------------------------------------------------------------------------------------------------------------------------------------------------aaagacaaaaa----------------------------atggtCCTATTGTGTGTTCCCAACAATCAACTCAAAAGTCTATGACAAAGAGGGGCTCCGAAGAGCT-CTTTATAAATACTTTAGATTAGGTACAGTTAGTTATACTGAAAGTTGAGTTCGTCTGAAATGttcaaaaaaatgt------ttctgtttaattCTCAAATGGTGCTTG-TTATAGTTTAGCATTTCTGTTAAATTTGTGCATTGAATTACTTGTTATCCAAGCGTAGCAGCTGCTCCTTACCATTTATTGTTAAGGACTTTAACTGTCCATCTTCTTCAACTTCTACTCTTTCTTGACCATTCTCGACAATTCTCTTTGTGGTGATCTTTCTACCGTTCACGATTTGGTAGAAGTTGATATAGACTTGAAGTTGCCCATGCCACTGCCGCCAAATGAGGTGGACGAAAATGAAGTGAGGCCCCCATGGCCCAGGGACCCGAACGAAGTGAATCCTGTATCAAATGCAGAAAATCCACCTCCAAAGGATGGAAACCCACTGAAGGCGGAGAAAAAAGAGCCTGTGCCACGGTTTCTCTCTCGGGGACCCCTTCGGTTCCCAAAAATGTCTTCAAATGGGTCTTCAAAGAAGTCGAATGAAAATGACTCCCTTCCACCAAAAAATTCCCTGAAGACATCGTCTGGGTTCCGG-----------AAACTCAAATGGACTATCAAAATG----ACTTCCACCTCCT---CCACCACCATTTAAGCCTTCTTTGCTGTATTTG----TCATAGATGTCCCATTTTTTAGCATCTGATAACACCTCATATGCCTCAGCCACTTGTTTGAATTTTTGCTCTGCTTC-------TTCTTTATTCTCAGGATTTTTATCTGGGTGCCACGGTAGTGCCAGTTTCCGGTATGCCTTCTTGATGTCCTCAGGGGAGACATGTCTCTGCATGCCTAGAACTTCATAGTAATCCACCATGTTTTAACAGTTTGCTGGAACAAGTCCCAGGACGCGGACGACCGGCGGCGAAAAGAAGGG--AGGTGTGCGGCCGGTCCCCTC

a score=4069
s chr3            43927747 156 + 160039680 TCTTAGATGTCCCACTATTTAGCATATGATACCACTTCATATGACTCAGT-ACTTGTTGGAATTTCTGCTCTGCTTCTTTTTTTTTTTTTATTTTCAGGATTTTTGTCCGGGTGCCATTTAAGTGATTGTTTTCGATATGCCTTTTTAATTTCTTCA
s HiC_scaffold_1 138921343 144 + 233722169 TcatatatttctctctttttaggaTCACTCAATACTTCATAAGCTTCTGCGAcctctttaaatttttcctctgCCTGGGGAGATTT-------------GTTCTTGTCCGGGTGAAATCTGAGGGCTTGTTTTCGGTAAGCCTTTTTAATATCTTCA

a score=5268
s chr3            44092728 166 + 160039680 CTTGATTTAAACCTTTTTCAGGACTT-------TCTAAAACTATTATCTTCTTCTCATCCCATTGAAACATTTATTCTGTTTTATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACTAAATTGTTATAATTTCTTCCTTTGACAAC
s HiC_scaffold_1 230701685 171 + 233722169 CTTCATTTCTGCTCTTTTCAGCTGTTCTTGGTCTATAAAATCA--ACTTCCCAGTCAACCCATTGAAACAGTCATTCCATTTGGTGGTGTGAAGTGTTGCAAGACTCTAGAATGGAAAACAAAGCTCATTAAGAGCTTTGAACTGAAATGCTATGGTGTGGTCCTGTGGCAGC

a score=5346
s chr3            44092729 173 + 160039680 TTGATTTAAACCTTTTTCAGGACTTTCTA------AAACTATTATCTTCTTCTCATCCCATTGAAACATTTATTCTGTTTTATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACT--AAATTGTTATAATTTCTTCCTTTGACAACAGTAATCA
s HiC_scaffold_1 206461671 174 + 233722169 TTGGTTCCTGCTTTCTTCGGCCTTTTCTGTCTGTGAAACCAACCTCCTCTGCTCAACTGGTTGGAATACTTACTCTAGATTATAGATTGAAGTGTTGCCCAGTTCTAGAATTGAACATAAAGCC-------ATCCTAAGGTTGGAAATTGTTGTAACTTTGTCCTTTGAGAATACAAAGCA

a score=5361
s chr3            44092782 110 + 160039680 ATTGAAACATTTATTCTGTTTTATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACTAAATTGTTATAATTTCTTCCTTTGACA
s HiC_scaffold_1 106695075 107 + 233722169 ATCCAAgcatatattctattttatggaaaaaagtgcTGCCTTATTCTAGAATCACAAATAAAGCCAATTAAGGTTTTTAAACTAAATTG---TGATTTTATCCACTGACA

a score=4323
s chr3           44092790 103 + 160039680 ATTTATTCTGTTT-TATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACTAAATTGTTATAATTTCTTCCTTTGACAA
s HiC_scaffold_1 53736946 103 + 233722169 ATTCAGTCTATTCCTGTGGAATGAAA-ATTACCCCATCCTAGAATCATAGATAAAGCCAACTAAAACCTTTAAATCAAACTGTTCAATTTTTGTCCTTTGACAA

a score=21877
s chr3            44725144 662 + 160039680 TCTCATTTCTCTACTATCAAGTCTAAGTCG--GTCTCCCAAGAAGTCAGAGAAGTCATGGAAAATCTTCGGGGGAAGGAGAGGAGCTGAGCATTGAAACAATGAACAAGAGTCTGGGGAGTCATTTTGAGCA-CATGGAACACTTACCAACTATATG-CTAC------TGATTGGTCCAAACAG-AATCTATTCAGGGGCTATGCATTTGTCACATAGGCCACTATGGAGGAAATTGATGCAGCTGTGAATGCAAGACCATGCAGTGTGGATGGAAGAGTTGTGGAAGCCA--AAAGCTCCATCAAGAGAAGATTCAGAGAGACCAGGTGCCCACTTAACTGTGAAAAAAAGAGATAGATCTTTGCTGGTGGTA--ACAGACAACACTGAGGAATGTCATCTGCAAGGTGTTTTGAA----GTATTAAAA---AAGTTACTGAAATCATGACTGACAGAAACAGTGGAAAGGGGTTTTGCTTTGTCACCTCTGATGACCATAACTCCATGGATAAGACTGTT--------ATACCATACTGGGAATGGCCACAACTGTGAAAGAGGAAAATCTCCCATGGGGGTAAAAGTTTGGCCGTGCTTCCTCCA-------GCCTAAGAGCTCC------------------------AAGTTGTTTTGTTGACAAAAACAATTTTGATTGAAAAGAAAATGTCAGCAATTGTGGTAGCTTCAGTTGCA
s HiC_scaffold_1 138522923 696 + 233722169 TCTCTTTCGATTGCTGTGATGTCTAAGTCATCATCTCCTAAAGAACCCAAACAGCTGTGGAAGCCCTTCATTGGAC-------AGCTGAGCTTTGATACAACTGATGAATGTCTGAGAAGCCATTTTGAGTAATGAGGCACACTCACCAACTGTGTGGCCATGAGAGATGAGAGTTCCAAACACCAAGCGTTCCAGAGGCTTTGGGGTTGTCACTTATGCTACTATGGAGGAGGTGGGTGCAGCCATGAATACAAGGCCTCATAAAGTGGATGGAACAGTTGTAGAACCAAAGAAAGCTGTTTCAAGAGAAGATTCTCAAAGATCAGGTGCCCACTTAACTATGAAGA--------AGATCTTTGCTGGTGGCATTAAAGAAGATACTGAAGAACAGTACCTAAAGGTTATTTTGAACAGTGCAGAGAAAATGAAGTGATTGAAATCATGACTGACTGAGGCAGTGG-----------TTTTTGTAACCTTTGATGACCATGATTCTATGGATAAGATTGTCATTCAGAAATACCATACTGTGAACGGCCACACCTGTGAAGTAAGGAAAGC-CCTGTCAAAGCAGGAAATGGCTAGTGCTTCATCTAGACAGAGGTCTGAGTGGTTCTCGAAATTTTGTTGGTGGTTATAGAGGTTATTTTGCTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCAAAGTGGCTTTGGTGGCA

a score=15595
s chr3            45108581 2826 + 160039680 gtccttaaagaaaaacaggaaaacacaaccaaacaggtagaagtcctta---aagaaaaacaggaaaacacaccca-aacaggtgctggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAAAACTAGGAA---------AGAAATCAGCAACAGA----ATACAAGAGATGGAGGAGAGAAT--GTCAGGTGCAGAAGAT----TCCATAGAGAA--CATGGGCACAACAATCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACTTCCAGGAAATACAGGACACAATGAGAAGACCAACCCTACGGATAATAGGAGTTGATGAGAATAAAGATTTTCAACTTAAAGGGCCAGCAAATATCGTCAAAAATTTAT------------------AGAAGAAAACTTCCCAAACCTAAAGAAGGAGATGACCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAACAGAAATTCCTCCAGACACATAATAATCAGAATAACAACTGTACTAAATAAAGAAAGAATATAAAAAGCAGTAAGGGAGAAAGGGCAAGTAACATATAAAGGCAGGCCTATGAGAATTACACCAGACTTTTCATCAGAGACTAGGAAAGCCAGAAGATCCTGGACAGATGTTATACATACACT--AAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCAC--TACAAACCAAGTTCACAAA-TTATCTTTCCAGGAATCCAGCCCTTAAAAATATAATAACAGAAAAACACCAATACAAGGATGGAAATCATGCCCTAGAAAAAAGCAAGAAAGTAATCCCTCAACAAACCAAAAAGAAGACAGCCACA--------------------AGAACAGAATGCCA--ACTCTAACAAC----------AAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACGTAGACATAGACTGGCTACATAAACAGGACTCAACATTCTGCTGCTTACAGGAAACCCATCT---CAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGGAAAC----ATTTTACCAAGC---AAATGGTCCCATGCA-------------TCCTATCAGAC------CACCATGGACTAAGGCTGATCTTCAAAA---ACAACATA----------------------AATAATGGAAA---GCCAACATTCACGTGGAAACTGA-ATAACACTCTTCTCAATGATAC--------CTTG--GTCAAGGATGGAATAAA-----------------GAAAGAAATTAAAGACTTTTT----------------------------AGAATTTAATGA---AAATGAAGCCAC-------AACATACCCAAAACTATGGGACACAATGAA---------AGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAA---GAAA------CTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATA----ATCAAACT------CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAA-GAATTAACCAAACTAAG-----AGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGG-GCACAGGGACAACATCCTAAT--------------TAACAAAATCAGAA-----ATGAGAAGAAA---TATAACAACAGATCC-----------------TGAA--GAAATCCAAAACAC-------CATCAGATCCTTCTACAAAAA-------ACTCAA---CAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCA--------GGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGT-----CATTAATAGTT--TCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCAC----AAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTC-------------------ATTCT---ATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagca-ttccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcagg------------------------------------------------ggct--------------------------------------------------agacaaggct--------------------------------------------------------------------------------------gtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaaga
s HiC_scaffold_1 171883552 3095 + 233722169 gtgcTTAATGAGCacaaaaaagatttaattaa-cagataatggacctgatACAAGACAGTCTACAGAATACACTAATAAAAGACACttgagcaaaacaaaatgatac--aaactaTGAAGGC---CCAGCACAGAAAAGAGCACATTAAAAGGTACCAATTAGaagttcagaaaattaaaaattctttcgTAAGTATTGGCAGCAGACATGACCAATGTGAGGAACCAGAGAACAGGGCTGTTGCTAGTGATCAATTACACAGAGACACCTTAGAAACAACaat---agaacatgaaaaatg------------gattcaACAGCCCCTGGA------TGATGTAA--AGAAGACTAAC------------AGGAGTTACTGAAAAATAGGAAGCT-ACCACAAgtggc--------atttttaaaaacctgtttactgaataatagccaaaaaaaaaaactttccaaatatggaGAAAGAGTCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcagcaTT----------------AAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAA-GTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc--aaactagcactccaaaatTT-------------------CTCAAGG---------ATATCTTAGACACAAGGAAGCTAGCAATGTC-AAATGGTCCAACCAAATGACTACAGCATACAGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaataggaaaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCCAACCAGATACagattggc--aaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAAGGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagagaaaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatcaactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATT----GGCTTAATAAacatctacagagtgttcc----atgcaaaaacagaatacatattcttctcagaaaCATGAAATTTTCCCCAAATAGAAAACATACTCATCTCATAAAGGCATACTTAAGTATTC------ATAAGGAgtcaaaattattccat----gcatacaTCAGGTCATAGTGCATAAAACTAGAATGCAGtgccaaaagaaacca--cagaaattagcaaatgcatggaaattaaataacacactcaaGTACTCAGTGGGTCAGaggagaaatcaaggaagaaatatgAA-----AGCT------ACTAGAAGTAAACAATTATGCCATTCCAACACACAAGAACTTTGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaacagtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaaaggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaa-agaaccaACGAATTGAAGAGCTgc---ttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaacaataaacaaacaagaaga---------------------------agaaaagatcaaa----agtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttctaaaagattaaaaatggagATTTTAGAATAAATGAATAGGTTCTCAGATAACAGAAATTATCAAAAATGAAccaaggccagaga--tttagctcagcagccc-------agcaggtgtgaag----tcatga--------gttcacaGAGCGCagtaaatcattaaaaagatcatacatcaaaACCAACAAGGGTTTCTCCCAGGGA--------TGATTCAACAgac--aaattaataaatgcaatGTGTCACATAGA------CAGAAGCAAAA--------ATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAAATGCAACA---ATTCATGGTAAAagtc-tgaagaaaataggtatagaatgATCTTTTCTGAAGCTGGTAAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgg-gaaaaactgaaagctttccctctaaagcCAGGAACACagccaagcgtggtggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataaaataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaagggtacgtacaagaaaaaa-gaaataaaattatcattattttcagataacaTGAGCGTCTACATAGA-AAACCAAAAAATTCCAC---------TCCAAAATTAATA------TCCA---AAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaaca--------ggaaCTAATCTAAGACAGTGAAAGTCCTTTACAATGAAAACTCC---TATGTAAAGGGAGA

a score=13345
s chr3           45108627 1067 + 160039680 ttaaagaaaaacaggaaaacac------acccaaacaggt--gctggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAAAACTAGGAAAGAAATCAGCAACAGAATACAAGAGATGGAGGAGAGAATGTCAGGTGCAGAAGATTCCATAGAGAACATGGGCACAACAATCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACTTCCAGGAAATACAGGACACAATGAGAAGACCAACCCTACGGATAATAGGAGTT-GATGAGAATAAAGATTTTCAACTTAAAGGGCCAGCAAATATCGTCA-AAAATTTATAGAAGAAAACTTCCCAAACCTAAAGAAGGAGATGACCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAACAGAAATTCCTCCAGACACATAATAATCAGAATAACAACTGTACTAAATAAAGAA--AGAATATAAAAAGCAGTAAGGGAGAAAGGGCAAGTAACATATAAAGGCAGGCCTATGAGAATTACACCAGACTTTTCATCAGAGACTAGGAAAGCCAGAAGATCCTGGACAGATGTTATACATACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACTACAAA---CCAAGTTCA---------------CAAATTATCTTTCCAGGAATCCAGCCCTTAAAAATATAAT-AACAGAAAAACACCAATACAAGGATGG---AAATCATGCCCTAGAAAAAAGCAAGAAAGTAATCCCTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCA-ACTCTAACAACAAA-----------AATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACGTAGACATAGACTGGCTACATAAACAGGACTCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGGAAACA
s HiC_scaffold_1 67576113 1021 + 233722169 TCaaggaaatacattaaaaaactggatgagccaaacaaaacagctgaaaatCTGAATGACAAAAATCAAAATCAACAAGAATATGGAACCCtcaaaaaaatgtcaaa-------aataccTGAAATTAAAAAACT-GTATAGAATTCA----TACACTACA-GAAATGACC-----AATGTAAAG-GCAGAGTGTTTAATATTGAA----GACAAAATAGTGAATAacaataaagaactcaaag-------------aagctaagaagaaaaatag---acaataaGAA----AAGACTAtg--caacagctgctagatgatagCACAGAT------------GAATTCACTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagtttaaaatacaagtaactgacatttataaaacattgaaCAATTATGATAAAAA--GAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTTGGATGATATATGAGTGCTAAATCAGCTCTA-aggaa---aatacttaagaatattctcaacagaaa--caataagtcagacacagctaaaatca----cagaaagaaagcAGTAAGGTCAATgataaacag--caacaaaaaaatccggaaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACATATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACA

a score=4281
s chr3            45108701 280 + 160039680 GTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAAAACTAGGAAAG--AAATCAG-----CAACAGAAT----------ACAAGAGATGGA-----------GGAGAGAATGTCAGGTGCAGAAG-ATTCCATAGAGAACATGGGCACAACAATCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACTTCCAGGAAATACAGGACACAATGAGAAGACCAACCCTACGGATAATAGGAGTTGATGAGAATAAAGATTTTCAACTTAAAGGGCCAGCAAATATCGTCAA
s HiC_scaffold_1 139027732 279 + 233722169 gtacaaaaaacaaaaagaacccaACAGGAATC----TTGGAAAT-GAAAAGCTCAGTAAGTTAAATTAAGAACTCAATGGAATGACTAGTCAAACAGAAGATGGAATTCTGAGCTTGAAGACAA----AGTTGATGAATTATCATACAAGGaacat----------aataaagaaaa----agatgtcAGAGGAAT-------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAA

a score=7346
s chr3            45108980 727 + 160039680 AAAATTTATAGAAGAAAACTTCCCAAACCTAAAGAAGGAGATGACCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAACAGAAATTCCTCCAGACACATAATAATCAGAATAACAACTGTACTAAA--TAAAGAAAGAATATAAAAAGCAGTAAGGGAGAAAGGGCAAGTAACATATAAAGGCAGGCCTATGAGAATTACACCAGACTTTTCATCAGAGACTAGGAAAGCCAGAAGATCCTGGACAGATGT-TATACATACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACTACAAACCAAGTTCACAAATTATCTTTCCAGGAATCCAGCCCTTAAAAATATAATAACAGAAAAA-CACCAATACAAGGATGGAAATCATG----CCCTAGAAAAAAGCAAGAAAGTAATCCCTC--AACAAACCAAAAAGAAGACAGC-------------------CACAAGAACAGAATGCCAACTCTAACAACA----------AAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACGTAGACATAGACTGGCTACAT----AAACAGGACTCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGGAAACATTTTACCAAGCAA
s HiC_scaffold_1 129057712 702 + 233722169 AGAAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCAT----AGAAAAAAACC----CTGAAGTCCAACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaa-taaagtatt---------------ttcatGA----------CAGAGA---GAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAA--AAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaagaagaagggaaaaggagaatcagcaacaggaaaatcatacaatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTTTCA---------GAAGCCAAAGattgaagaaatcaagaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta----aaatt--aAGACtcaaaaacagtattccatgcaa

a score=7661
s chr3           45108982 296 + 160039680 AATTTATAGAAGAAAACTTCCCAAACCTAAAGAAGGAGATGACCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAACAGAAATTCCTCCAGACACATAATAATCAGAATAACAACTGTACTAAATAAAGAAAGAATATAAAAAGCAGTAAGGGAGAAAGGGCAAGTAACATATAAAGGCAGGCCTATGAGAATTACACCAGACTTTTCATCAGAGACTAGGAAAGCCAGAAGATCCTGGACAGATGTTATACATACACTAAGAGAACACAAATGCCAGCCC
s HiC_scaffold_1 87509208 283 + 233722169 AACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC

a score=28588
s chr3           45109644 1740 + 160039680 ATCTCAGGGAAAAAGACAGACACTACCTCAGA----GTGAAAGGCTGGGAAACATTTTACCAAGCAAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAAC------------ATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTT---CTCAAT--GATACCTTGGTCAAGGATGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCA-CACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCAC-CCAAGAGGA-GTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACT---AAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGG-GCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAAAT---ATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACTCAACAAAACTG---GAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAA---TTAACGATCT-AAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAG-------TTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAA--TAGAAGTA-GAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacat-----taaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaaga-----tcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaagg----agatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaact-caaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1 38614343 1698 + 233722169 ATCACAGTGAATAAAGCA-----TTcctaagaaaatgcaaaagaatgaaaaa---tttaccatgcatat---------tatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaaaaataat--aaatccccAAACCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACC-AGAACTCATGGCCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaa----taggaaaatccaAACCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaa---tcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaaggaaaaagaaaaca--caagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAGTGTGCAAAACAGTGAGAGAACTCAGAAAAAA----------CTCAGACA--TACAAATTCCCAGAACTGACCCA----CAAAGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTTCCA---AAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGCAGGCAAAGAGAGT-----GACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA--------------GTCTAGCAAACTCTAAC---AAAATTCTTGAAGAAAATTGTTTGGAAATTC---TTtagtac---aacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGAAAGAT---GAACATCTTCAC-------------------------TCTGTTACCACCACTCTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGAT---GAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACT-CACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtag--aaataaaaaaataaatacacaaaaaagaaaagcattcctA-ATAACAGTGatgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=12241
s chr3            45109656 494 + 160039680 AAGACAGACACTACCTCAGAGTGAAAGGCTGGG---AAACATTTTACCAAGCAAATGGTCCCATGCATCCTATCAGACCACCATGG--ACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAG---AGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAA
s HiC_scaffold_1 102292886 476 + 233722169 AAAACAGGTGATACTTTAAAGGGTAAAACAGGtcttaataaatacaaaaaataaataatgtcttGTATCTTATCAGATTACAACGGTTAGTAAG----------AGAAACTACAGAAATCCTACAGACCCTACA----------gattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCA---TGAATcagatttgtttgtttgaaaa

a score=37802
s chr3           45109705 1825 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATC--AGAAATGAGAAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAA---AAAACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCT------AAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATA-----GTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCC-------ACAGT----CACTCTGATAC--------CTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC----AGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaag----acaaaaaccacatgatcatctccttagatgcggaaaaagc-----attccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaag--gctcatacctaaccatgataaaag-caatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatc-aagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaat--aatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaa-agaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaat
s HiC_scaffold_1 65296593 1795 + 233722169 AAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaaggtaagac-----------CTAAATCTTAGAAATTAGGA-----ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATCTTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAATAAGATATAAAGACCCTGGAATAATACAGTCACAG-----CCAATGAATTAAAC-----CATAAATAAGAACATCTATGAACAAATATAAACCCAGAC----TACGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAAGA-GATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAGCAACTTA-ACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGtca---cacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAA--AACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAAT

a score=79093
s chr3            45109705 3138 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTG--------ATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAA---TTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAA------GAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAA--GAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACT------CAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAA----------------------------------------------------------CAGTCC-------------------------------------------------------------CATATACCCTAAAGAAATAGACA-CAGTCA--------------TTAATAGTTTC-------CCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAA--------AGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAat-------------------------------------------------------------------------------------------------acaattctcgcta----accgaatccaagaacacattaaagca-----atcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacga----taaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcc-cactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaactcttct------ctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacac-acctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgacaaatgggacctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttactatcc-taaatcagataggtgactaatatccaatatatatgaagaacataa---gaaggtggactccagaaaatcaaataaccccattaaaaaatggggctcagaactgaaca-aaaattctcacctg-aggaatacaaaatagctgagaagcacctgataaa-atgtccaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagattacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccatttttggtgggattacaagcttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggacatagtaataccggaggatcctgcaatacttctcctgggcatatatccagaag--------acgttccatctggtaataaggacacatgctccactatgttcataacagccctatttatgatagccagaagctggaaagaacccagatgcccctcaacagtggaatggatacagaaaatgtggtacatttacacaatggagtactattcagctattaaaaagaatgaa-tatatgaaattcctgccaaatggatggacctggagggcatcatcctgagtggggtaacaaaatcacaaaggaacgcacacaatatgtactcactg
s HiC_scaffold_1 195238417 3335 + 233722169 aaattatcccatgcatactatcagaccacagtgcaatgaaactggcgaaaggaaccacaagaacttcataaaca------------cactGGCATGTTA-CTGAacaac--------cagtga-------gtcacagatgaaagtaaagaagaaactgGAAACT----AGAACAGTTGAATGACAATGACAATGCACCATACCAGAACTTATGAGGCACGATGAAAGCAGGCCTAAAAGAGAGATTCATAGTAATAAATATCcattcagaaaaac-agagcaagcacatatgaATAACTTcatggtgaacctcaaacttctagaaaaagaagaacaggcTAAGCTAAAAGCTTGGAGGagtg------agaaaattataaatatcagggcagaaattaacacactggagactaaaaaa---atgcaaagaatcaatgaa--tcagagttggttctttgaaagattagataaaattgacaaacctttagccaacctcatccaaaaaggaaagaaaaaac--tcaaatccacacaattaggaatgaaaggtGTAAAAGCACCACAGACCCTTCCGAAATCCAGATCAtctaca---cctactttgaaaatttgtattctaataagat--gaaaatgcagaagaaatggacaggttcctagaaacatg--agttaccaaagctgaatcaagaacatataaaattcCTAGAGGCCAGAgacataactcagtggcacaaggtctgcctggcaagtgtgaggtcatgagttcaatcctgataccaagaaaagaaggaggaggaggaggagaaggaggaggaggaagaggaagaagagataaaaatcctaaataaaccaataccaatcaatgaaattgaagatgtaataattttttaaaaatcaacaaagaaaatcccaggct-gatggattcactgctgaattctacaagaaatttaactACTACTAACTAATCTAACgctactacttctcaaactctttaatgaaattgaaagggaagcagtatttctaaattcattcctggaagcaagcataaGCCTaataccaaaagcagagaaggactcaaccaagaaagagaattacaggtcaatttccctaatgaacactgatgcaaaattCCCCAGtaagggggccagggatttagctcagtggcataagtgctgtactggcaagttcaaggtcctgagttcgatccctggtaccaaaaaagcaaaacaaaacaaaaatcctcagtaagatactgacaaaaagactgcagcaaatcatgaagattaTGCACTATGATCAAGtgaaattcatcccagggattcagggatggttcaacacacataaatccataaatgtaatatactacatTAACAGagacaaggacaaaaaccatatgatcatctcaatagatgcagaaaaagctcttgaCAAAGTCCAGGAcccatttatgattttttaaaaacctacaaaaagTTGGAATAGGTTGTCTTtatgtcaatctgataaaagtcatctacaacaaaccaatagccaacatcataccaaatggacaaaaac-tgaaatattccTCTCTGAAATCAAGGACAAGATAAGGATGtgcactgtcaccactcttattcaacatagtcctggcaACTTTTgttggagcaattagacaagagaaataa---aaggaaaaaagatagaaaaggaagaagttaaactattaatattttcagatgacatgatattctacatagaagactccaaaaactccaccaaaagactactagacttaataagcaaattcagtaatgtagctggatacaaagtcaacactcaaaaatcaacagctttcttgtacatgaataacaaactcatggagagaaaaatcagggaaacaac-acgtTTTACagaagcatccaaaaaatgaaatgccttggaatcaatctaatgaagaatgtaaaagacctctactcTGAAAACtatagtgctctgaaaaaggaaactgaagagaatat-agaaaatggagagacatcccatgctcttgggtagcaAGAACCAATagagtaaaaatggccatacttccaaac-tgttatacagattcaatgcaatcccaatcaaaataccactagcatacttcacagatctagaaaaaccattcctaaagttcatctgaaaacagaagagacctagaatagcaaaggcaatcctgggcaacaaagacaagaga------gaggacatcacaatccctgacttaaaattatattataaagctactgtagtaaaagcagtgtggtactggca-aaaaacagacccaaagatcaatggaacagattagaaga--cagaaacaactccagacaaaCTAAGTCAACTT-ATcgttgacaaaggtgccaaacacattcactggaagaaagatagcctctttactaaatggtgctggtaaaactggctctatgcatgccaaagattaaaactggactcgtatctctcaccatatactaagctaaaatcagaatggatcaaagatcttaatattaaagcaaaaatatt-aaatctCTGGAAAATAGAGTAgttaaaacttttgaagacattgtca-aagacaaagactttatgaacaaaacccagattgcacagaAACTAttgtaaagaatcaacaactgagatctcacccta-tttaaagcttttgcacagcaagaggaaccaccaacagagtgaagacataACCCAAAGTGtgggagaaaacatttgtcagctgttcctcagaaaacagattactattgagaacatataaaagaactaaaataaaactcaatCCTCCTGGATttaaagactcaaccaaaaaatgggcagctgagatgaatacacagttctcagatgaagaaatacaaa------------cagcaaataaatatgttcaacatttctgattattcaagagatgcaaatttaaaaaccactgaaattccac------ccagaaagaatggctgttatcaacaaatcaaccaccaac--atgctggaggggctgtggggaa--aggaaTCCTtgtccattgttggtgggagtgcagactagtgcagccactgtggaaatgaaagtggaaattcctccaaaaaataggactagaggtcccattcaacccagctattccccttctcagtatcttcccaaaagaattaaaaacataccactt--------tgatatatgtgcgcccatgtttatagcagcacaatttgtaataactagatcttg----gaacctaaatgcccatcaactgaggaatagatttttaaaa-gtgatatttttatataatggagtccTACTTGaccataaagaagcataaactacagacttttctaggtaaatggatacaacttga-atcATAGTCATAAGTGtaataaataagacacacgtgta--cacaccatattgtctcagtg

a score=26421
s chr3           45109705 1606 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCT---GATCTTCAAAA--ACAACATAAATAAT----GGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAACTAAGAGTTGT----TTATTTGAGAAAATCAACAAGA--TAGATAAACCCTTAGCTAGACTCACTAGAGGGCAC----AGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGA--AATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA--ACTCAACAA--AACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCC-----AAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatcca---------------------------------------------------------agaacac-------------------------------------------------------------------------------------------attaaag----------------------caatcatccat---------------tctgaccaa---------------------------------------------------------------------------------------------------------------------------------gtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacga-taaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaacctt
s HiC_scaffold_1 66017625 1985 + 233722169 aaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagttc--gAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAA--AGAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaat-aaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaagaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaagaa---aaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ata---aaCTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=60713
s chr3            45109705 2510 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG---------AAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAAAT--ATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA-----ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGA-GCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagt--cttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagat-caagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatata-aatgaccctaaaaattccaccagagaactcctaaacctga-taaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtct-tcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaactcttctctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataa---aaactgaatggtcctagtata-gtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaa-cagca----atgacttgtgctctaagatcgagaattgacaaatgggacctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttactatcc-taaatcagataggtgactaatatccaatatatatgaagaacataagaaggtg
s HiC_scaffold_1 218599528 2458 + 233722169 aagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCAGGAAAACAGCACATGCACAAATATACAACGTAATG-TGCATCTGAAC-TTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaa-agaaagaaaagactcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaagaaggtataaaaagtTTGAAta---------acattaatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaata-aatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaaa-aagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaa-tacaattaacatatcttacagatctagaaaaaaacattccc-------tttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaa----agtctttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtca-----aaatggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTC---AATAGGGGTA---GACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttcaa-----agaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=8175
s chr3           45109705 448 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAAT
s HiC_scaffold_1 96522544 440 + 233722169 aaataatacAGTGCATATTAATGGGTCAT-----actaaaa-tgaaattagaaagc--cacaaaaaagaaactgctcagatCCA--TGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaatacaaatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=18972
s chr3           45109705 1351 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAA--AATTC--ACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACTAAGAGTTGTTTATTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAGAGGGCACAG----------------------------------------------------------------------------GGACAACATCCTAA-TTAACAAAATCAGAAATGAGAA-----GAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGA--TCCTTCTACAAAAAACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAA---AGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgat-------aaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactatta----gccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaag
s HiC_scaffold_1 77436268 1393 + 233722169 aaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGG------AAATCagtagaaa----agaaaac--------acatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaaaaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAG---TTCAAAGCATTACTAGAAATTATTTGACAG-----TCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaa--------atattttaaaaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTG---TTAATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTA-AGGTAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=80743
s chr3            45109705 3140 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAA-----GAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG--AACTATTCAAAGAATT--------------------------AACCAAACT-------------------AAGAGTTGTTTA--------------------------------------TTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAA--ATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA-----ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAA-AAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagat-caagggatacaaattggaaaagatgaagtcaaaataacactttttg-----cagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataa---tcataaataatataaa-----atatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttc---aagt-ctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaactcttctctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctag---tatagtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaac-cagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgaca--aatgggacctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttact-atcctaaatcagataggtgactaatatccaatatatatgaagaacataagaaggtggactccagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaaaat-tctcacctgaggaatacaaaatagctgagaagcacctgataaaatgtccaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagattacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggaga-aagaggaacactcctccatttttggtgggattacaagcttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggacatagtaataccggagg---------atcctgcaatacttctcctgggcatatatccagaagacgttccatctggtaa--taaggacacatgctccactatgttcataacagccctatttatgatagccagaagctggaaagaacccagatgcccctcaacagtggaatggatacagaaaatgtggtacatttacacaatggagtactattcagctattaaaaagaatgaa-tatatgaaattcctgccaaatggatggacctggagggcatcatcctgagtggggtaacaaaatcacaaaggaacgcacacaatatgtactcactgat
s HiC_scaffold_1 137516406 3225 + 233722169 aaattatcccacacatattATCTGACTACAGTGcatttaaattggaaattaacaacaaaatacataacaaaaagtacataaacacatgaaaactaaATAACATTCTcctaaacaatcaatgggtcagagaagaaattttaaaagatattatacAATATCTACAATTGAATGAAAGTGCAAATACAACTGACCAGAATCTGTAGGACATATTGAAAGCAGTTGTCAGATGGAAATACATAGTAGTGAATTCTCCCATCAGGAAAATTGGACGAACAAAAATTAACAACATAATGCTgcacttcaaacttctagaaaaagaagagcaagtcaagcctaaagaagggagaaaatataAGGGAGAACAAATGAATGca---atgagactaagaaaatggATACAAGGaattaaagaatcaaagagttggggctttttttcttttggtaccgggaattgaactcatgaccttgggtttgccaagcaggtgcttaagccactgagctaaatccccagccctaaacatTAGTGCTTTCAAGgaataaataacattgataaactcttagc----cttatcaaaaagaggaaagaaaacactcaaaccCACACAATAAGTAATGTAAAGGATGAAATccctacagatcctgtggaaattcagaagataat----tcctattttgaaaatctatactcaTATcacatggaaaacacagaagaaacagacagattcctggaaacatatgaattactaaaactagatcaagaacatataaaaatcttgaataaccttgtatcagctaatgaaattgaaaacctaattaaaaacttaacaaccAAGAAAAGTACAGGACCTGAccaattcacagctgaattctacaagaaatctagagaagatttaacaccaacacacctcaaactctttattgaaattacaagggaagtaattcttcctaaCTTATTccttgaggcaagtattaccctaattccaaatccagagaaagacccaaccaagaaagagGACTACAGGCTCATCTCCCTAAGGAATATAGAagccaaaatcctcaataaaatactagaaaacagaatagaacaaatcATCTATAACATTGTGCAcaataaccaagtgggattcagtccaggaatgcaggattggttcaacatatgcaaatcaataaacataatacaacatattaacaaaaccaaca--aaaaatcacatgatcatctcaatatatgcagaaaaaactgttgataaaattcaatattaattcatgataaaaaccctacagaaaatcaaaataaatgatctttgtctcaaactgataaaagtcatttatgacaaaacaactaccagtatcatactaaatggacaagcACTGGAAGCTTTGGCTCTAATATCacgaacaagacaaggatgtccactatcaccactcctattcaatatgggTCTGGGAACATTAGTCAGAACAATCAGATAAAAGagggaaatgaaaggaataagggtaggaaaggaagaaattaaa-------tttttgttatcttgatgacatgatactctacataaaggACCCTTAAAATCCCATCAACAGACTACAAGACTTAGAAAACGAATTCAATGGCAGAACTGGGtaaaaaatcaacactcaaaagtcagtaGTATTCATGTACAGAAACAACAAAC---ttg----agaaattagagaaatcacacccttcataataacagccaaaaaaaaaaaaaaaacccaaacttagAAATTAATCAAATGAAGGAAGTTAAAGAtttgtatattgaaaattacagtaagtactctgaaaaaagaaattgaagaggatatcaaaaaatggaaagatatgcctTGCTCTTgtataggaagaaccaacatcatgaaaatggccacact-ctcaaactgttacacagatttaatataaGCCAGATGAAAATACCAttggcatacctcacagatttaaaaaaaaaattcctaaaattcatatggaaccataaaagacctagaatagcaaaggcaatcctgggtaacaaaggcaaggaaggaggcctcacaattcctgatttaaaaatatattacaaaacttTTATACTAATATCGGCATAATACTAGCAATACAAAAACAGACATAAGGACCAGt-aaacagattataagatgcagacacaactacaaacattcTCAGCCAATTTATCTTTGATAGAGTGGCCAAACATGTGCTCTGAAAGAAAGATTGCCTTT--AAcaagtggtgttgg-aaaactggctctccatatgccaaagaaTGAAACTAGACTGATGTTTATCACCTTAAAGTAAAcctaagtcaaaatggatcaatg---tgTACACAGTacacagaaacgctaaatctactggaagagaaaataggtagaactcttgaaaatacaggtgta-ggtagagagttcataaacaaaacccagaatacacagaaaatactgcaaagaatcaacaggaatctgatcttattaaaa--aaaagcttttgaacaacaaaagaaatcaccaacaa-atggaaagacaacccacagagtgggaaaaaattacaGCCAATTGTctgtcagacaaaggacttatatctggaATATATTAAGAAC-TAGAAAATAGGAcccttcaaattcaaa-gacccaatcccaaaatgggcatctgagatgaatgtgcacatctcagatgaagaaatacaaatggcaaataaatatatgaaaaactgttcaacatcattgatcattcgaGAAATTCTAATTAAAACAACGTTGAGATagcctctcactccagaaagaatggctagcatcaaaaaatcaacatataacaaattctggagggaATGTGGGggcaaaaggaacacttctacattgttAATGTCAGTGCATACTggtaaaaccactatggaaat--atgTGTAAATTCCTAA---------ATATAATAGGATTAGAGGGTCCactcaatccagttattccccttctgggtgttttcccagaagaattggaaTATCATACCTTAACAATATATATGAAACCATGTTTGTAGCtttacaatttgtaatagtcagatcttggaaacaacccaaatgcccatcaacttgggattgaataaaaaagatgcagtAATTTCACTCACTGGGGtattattcagctacaaagaagaagaaactagaggcttttatagttaaatgaaCGCAACCAGAAACCGTagtagtaagtgaaataaatcagtcccACGTGTGTAAACAGCATATTATCTTATTGGT

a score=12560
s chr3            45109706 786 + 160039680 AATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCA-AAAAGAAACTG----------GAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCC-----------AAGAGGA-------------------------GTAGAT---------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAA--GAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA-----ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGT-----TTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAG
s HiC_scaffold_1 159882680 954 + 233722169 aattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAG------ACTCAAAAccatacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=10922
s chr3            45109729 1531 + 160039680 ACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGG-AGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-------CTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAG-AAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCA---------TCAGATCCTT----CTACAA--AAAACTCAACAAAA---------------------------------------------------CTGGAAAACCTGGACAAAAAGGACAAATTTCT---AGACAGATACCAGGTACCAAAATTA----------AATCAGGATCAAATTAACGATCTAAACAG-------------TCCCATATACCCT--AAAGAAATAGACACAGTCATTAATAGTTTCCCAG--------------CCAAAAGAGC-CCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCT---------AATTCCAGTTCTGCAC-AAACTATTCCACAAAATAGAAG---TAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACA---GAAAGATCCAACAAA-GATAGAGAACTTCAGACCAAT--------TTCCCTTATGAA------TATAGATG--------CAAAAATCC---------TCAata-caattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttatt-------ccag--ggatgcaggggtggtttaatatacggaaattcatcaa----------------------------------------------cataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcagg--aattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaaggga-tacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttct
s HiC_scaffold_1 115154266 1674 + 233722169 accTCATTGGAATAAAGCTAATATTCACAG-TATGAGAAGTTTTCGAAACTATGTAAGCACCTGGATATTGAACAACATATTATTGAACAATGAATGGGTCAAGGAAAGAATTTAAAAGGAGGTTAATAAATCTCTTAAAACAAGTGAAAAGGGAAGCACAACATACCACATCCTATGTGTGACATCACAGGTATTTCTAAGAGAG--GTTTATAGCAATAAATGCCTGCatcaaaaaatttacaaatatctca----aatagTTTACCATTGCACctcaagaaaccagaaaaacaatatCAAACTAAGTCCAGAATTAGTGGAATGAAAGGaataataaatatcagagcagaaatgagtGAAAAAGTGACAAAGA----TATGTAagg-------------aagagttttttttt----aaaggcttttagATAGATTAAAA---AGCAAGATTCAAATAAAGTCAGAGGTCATAATGGAGACTTTTAAATTTAT---GTCACAGATTAACAATAGAGATAGCAAGAGACCCTTAGAAATAACCATATGCTAATGTATTTgtcagttttctgttactgtaatgaACACTTAATATAAAGTTTGTTTGGACTCACATTTTAGAGTGTTTGATCCATCCGGATCTGTTGTTTGTAGGCCTCTGGTAGGGAGCAGGAAATCATGGCAGAAAGACATggtggagcaaaactgcttaCCTCCCcatcagaaactgaaaaaaagtgaaaaaagaaagggctggggtctCCTTAGTCCCTTCAAGGGCATGGCCCCAATGACTGAAGTCTTCCCTGTAATTCTTCGCTTCTCAAGTTACCACCATGTCTCAATACTACCATTCCAAGGAT---CAAGACTTTAACACAAgggcctttggggaacatttcagatctaaactgTAGTACTCAAGAAACTGGAAaacccagaagaaa-------tggataaattcatgAATACAAAAAACCTCCCTaaattaaatcataaataaaaagttaaacagatGATAAATGagattgaaaaaataatgaaagttctCTTGTAGAGTAGCTCATTGCTGTATTCTGCCAAACATTTAAGGAAGAACCAGTATCAATTCTTCTGAAATTactacaaaaaaatcacagaggaGGAAATTGTTC---CAAAGTTGATCACACCATCAAAACCAGACAGATGCAAGGATAGTTCCAAACATTCAGATCAATTAATGAGATACCATTACGATTAGAgttaaagggaaaatgaaaaaaaaactatgataTCTCATATTAACAAAATCAAGGATAAAAACCTTATGGTCTTTTCCATAGATacataaaaagcatttgataaaattcaat-ccTCTTCATGATAAAA-------------CAAGTCAATTGTAGAAT-ATACCTAAACACGGTAAATACCATATGTGACAAACTCACAGTGGACATCATATAGAACGG-GAAAATTCTGAAGGTATTCCTGT-AAGTCTAGAACAAGGAGAGGTTGCccacttttactatttttatttggcATAGTACTAGCAAC------------AATTAggtaagagaaagaagtaaagtaCTTCCATATTAGAAAGGAGAAAGTAAAACTGTCCTCATTTGCAGGTATCACAATCTTATATAGAA---AACCTGAAAACTTCAATAAAAAA-TGCTAA--CAAATACACAAATGCAATGAAGTTGCAAGATATAAAATCAGCATACGAAAACTGGTAGTGTTTCT

a score=20142
s chr3            45109753 1134 + 160039680 TCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCA---CCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA----------------ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAG-ACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGAC----ACAGTCATTAATAGTTTCCCAGCCAA-AAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC--CAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatct----ccttagatgcggaaaaagcattccacaagatccaacacccattaacga----taaaagtcttg
s HiC_scaffold_1 116835301 1103 + 233722169 TTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGA--TCCAAATCCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaata---------aaatcatgagtaAAATCACTGGAAT-CCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTA-AC----AGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGGAG-TACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTCATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagt---------caatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAG----Ggacaaaaaatcttaaaaaatctaatatccattcatgatttttaaaaaccctg

a score=56347
s chr3           45109757 2944 + 160039680 AAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGG---AAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTC---------------ACTAGAGGGCACAGGGACAACATCCT--AATTAACAAAATCAGAAATGAGAA--GAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA------ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAA-AAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagat-caagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcata-------aataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaatta---aagaagatctcagaaaatggaaagatct-----------ccca-tgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaac----tcttctctaggataaaagaacttct----------ggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtgacagacaagta-------gaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatg--------------------acagcattttcaac--------aaatggtgttggcacaactggttgttatcatgt------agaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaactta-tagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgacaaatgggacctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttacta-----tcctaaatcagataggtgactaatatccaatatatatgaagaacataagaaggtggactccagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaa-aattctcacctgaggaatacaaaatagctgagaagcacctg-ataaaatgtccaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagattacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccatttttggtgggattacaagcttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggacatagtaataccggaggatcctgcaata-cttctcct---gggcatatatccagaagacgttccatctggtaataaggacacatgctccactatgttcataacagccctatttatgatagccagaagctggaaagaacccagatgcccctcaacagtggaatggatacagaaaatgt
s HiC_scaffold_1 71798995 2897 + 233722169 aaacttaatagcaaaagaaaactcaacaatcacatagaaattaaattatactACCCAAAACaactaatgggtcacagatgaaattaaggaagaaagtaaacaatatctataactaaatgagaatgcagatacaacataccagaattgaTGGGACAAAATGAAGGCAATCCTAAGAGAAAAACTTATAGTGGTGAATTCACACATCAGGAATACAGAATGAGTACAGATCAAGAACTTAACATTTCACTTCAAGCTTCTAGTAAAAGAAAACGAGgacaaacccaaagcccataCAAGGGAGAAGATTTTGAAGCTCAGAACAGAAACTAACACAGTGGATTaaactaaggaaacaatacaaagaatgaatgaattgaCAAGttcattatttgaaaaaatta--aagaaaggtaAACCTTTATccaacattttcaaaaaaaaaaaaaaaagaaagaaaaaagaaaaaaccctcaaGTTAatgcattgaaaaataaaaatggtgaaatcatgatatattctgtggaaattcaaaagttcattaa----tattttgaaaatcttttgcTCCCATAGTGTGGAAA---TAGATAAATA-CACAGA-TTCTTGATATGTATGAATTATT-GAattgaataaagaagatataaaaattttgaataacacaaaatCAGGGCATGAgattgaaaaggtaattaaaattttaccaacaaagaaaaacccaggtctcAAGGGAGTCACTGtggaattctgtaagaaatttggAGGAGATTAaatgccagtactcctcaaact-------------------------------cctaACTCATTAGTGGAGTCAAGTatttccctgataccaaaaccagagaaagactctaCA--------------------AACCTTTCTAATGAACATtggtgcaaaaattctcagtaagatactaacaaatagaatgcagcaaatgatTAA---GaatatataccatgaccaagtagactTCATCATAGATATGCAGGGATGTCTttacatacacaaatcagtaaatgtaataaaccatatcaacagagccaaagacaaaaataacatgatcatcttaatagacgCAGAAA----GTT--------TTTGATGTCCATTTAtggtaaaaaccctacagaaatgcAGAATAGATAGTCATTATCTCAATCTAATGAAAtacatctatggcaaacca-aagCCAGCATCA----TACTGGGAAAAAGCTGAAAGT-TTCGTTCcaaaatcaggaatgagacaaggatgtccactatcaccactccttttcagtattattctggaaacattatccagagcaattaggcaagagagaacaatgaaaggaataaagataagaaaggaggaaattaattaattattatgtATGAATGGTATGATGCTCTCTATAGAAGACCTCGAAAAATCCATCCAAAGATATCTCAAttgaataatcaaattcagtagcataactggGTTAAAGTAgtaatcaa--aaataaatagcattcctggacaaaaacaacaaactcact------gaaattaGAGAAAACACATCCTTCACAGCATCCAAAAGAATGCAATAATGAAGAATA----------AATCTAACAatggaagtaaaagacctatacatcaAATATTACAGTACTCAGATAAAGGAGATtattgaaaaggatatcagaaaattgaaagatatcaCTTTTTCTACCCACTCCTcatgggtagaaagaaccaacatagtgaaaatgaccatacccCCCAAATT-TttaacagatttaatgcaatctcaatcaagaTACCATTAAAACATACCACAGATATagttaatatgtttttaaaattcatttggaaccagaagagtgctaaaatagaaaaaaaagggggctgaCGGGGGGCAGTGGGGTGCTGTGAAGGCGAGGTAGGAGGCATATCCCTGATTTAAAATGAcagtacaaagctactgtgataaaatgtacata--------atattgacaaaaaataaatttcaggatcaatgaaacaatttaaaagatacagacacaactacaaagcaCTTAGCtgcctt-acctttgacaaagagtccaaacatgttcactgaaagaaggtaaccttttaaaataacaaaatgaaattctCAACTCATTAAAAAATGGTGTTGAAAC-ATTGGTTGTCTACATGCTAAAGaagaagactaaaattagacccacgTCTAttatcatgcactaaagtca-----aaatggatcaaagatctaaatattaaaacacaaacac-gaAACATACTGGAAGAGAAGAT----AGGAATCTTGAAGATAAAAGTGTA-GGCAGGTATTTCATGAACTAAACCCTAACTGCATGGGAAACAAT-TCAAGAATCAAGAACAAGGATCTTATCTTACGAAAAAGCttccaca--tcaaaagaaatcaccgacagagtgaaaagacaacacatgGAGCAGGAAAAATTTTTATCCAAGTGTTCCTCAGCCA---AAGT-ACTTATATGTAGAACATACgaagagt-taaaaaaataaa-tatgcaaaattcaaagacacaatacAACAGTGGGCATCCAAGAAGAATAGGCACTTCTTaagtgaagaaacacaaataacaaataaatatatataaaaaatacgcaacatcattggtcactagagagatgtaaattaaaacaatactgatatTCTGTCTCCCCCTAGAAAGAATgattgtcatcaagaaatcaagcaataacagaTGC-----------TGGGGGAAAAGGAAACCTTTTCCACTATttgtggaagtgtagactggtgtaaccactgaagaaatcagtgtgg---------aaaaaaCTAGGAGAAGAGATCCCAGATATTCCC-CATTAGCTTGTCctacaagaattaaaaacataaaac------catGGTGATATGCATACAC------CCatatttataatagcacaatttgttgtagttaaattttggaaacaacccaatagtctttcaactgaggaatggataaaaatgatat

a score=11096
s chr3            45109802 508 + 160039680 TAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGC-ACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTC--ACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGG--GCACAGGGACA----ACATCCTAATTAACAAAATCAGAAATGAGAA----GAAAT--------ATAACAACAGATCCTGAAGAAATCCAAAACACCA-------------TCAGATCCTTCTACAAAAAACTCAACAAAACTGGAAA
s HiC_scaffold_1 121849277 523 + 233722169 TAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGAATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTATttctgtgatagctcagacc---ccagaataaatccaaagaagcaagaaa

a score=14538
s chr3           45109831 1067 + 160039680 AGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACA--------CAT-CTAAAAGCTCTAG------------------------------------------------------AAAAAAAGGAAGAA-------------------AATTCAC----CCAAGAGGAGTAGATGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAACTAAG----------------------AGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGA-GAAGAAATATA---ACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA-----ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTT---CCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcagg
s HiC_scaffold_1 89720323 1331 + 233722169 agtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAATAAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAA-TCAATAATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=34442
s chr3            45109911 1525 + 160039680 ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAA-AATTCAC--CCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACTCAACA-------AAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccatt-ctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacata---atccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagat-caagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccc-taaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataa--tcataaataat--ataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctga----agaaagaaattaaagaagatctcagaaaatggaaag
s HiC_scaffold_1 124174614 1476 + 233722169 actaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca---gaaata--------tagca-----ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAAA----------GGAAATGCTAAA----ATCAG-TATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAA-----------GTGGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGAC-CTTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCaag------taataagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=56487
s chr3           45163455 3495 + 160039680 agtcacttaaagaattacaggagagcactgctaaagagttacaggtccttaaagaaaagcaggaaaacacagccaaacaggta--gaaatcattaaagaaaaa------aaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatactagaac-------------taaaaggggaagtaga-cccaataaagaaaacccaaagcgaggcaacactggagata------------gaaaccctacgaaagagatctggaaccatagatgcgagcatcagcaacagaataCAAGAGATGGAAGAGAGAATCTCAAGTGCAGAAGATTCCATAGAGAACATTGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATG-AGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCT--TCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCC-CATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATT-CCACGACAAAAACAAATTCACAAAATATCTTTCCA--CGAATCCAGCCC------TTCAAAGGATAATAACAGAAAAGAAGCAAT--ACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATC-----------ATTCAACAAACCAAA-AAGAAGACAGCCACAA--GAACAGAATGCCAACTCTAACAACAAAAATAA----AAGGAAGCAACAATT----ACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGC----ATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGA-----CACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGAT---ACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCT-AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATA-----GTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC---CACTATTactctgatac----------------ctaaaccacagaaagacccaacaaagatagagaacttc----agaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaag----acaaaaaccacatgatcatctcg--atagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggcccat-acctaaacatgataaaag-caatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaa-agaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaa
s HiC_scaffold_1 65294981 3405 + 233722169 AATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaata-taaaacatcaATAACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACCAAA-----TAAAATCCAGGAGatcaaaaattacactgaaagcaTAGGCAGGAGA-----AATGACAAATGTGAGCA-------CAGAGTACT-GAAATAGAAGATGGA---------GCTGATGTTGGCGTTGA-ATTATTCACAtataccttaaaaacaa-aaaacatggaaaatggagccaac----agctgctagatga----------aaTGCGGAAGACTAAATTAACTGGAAGGAGTAAA-AATCAGAACGAAG---------TACAAATGGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAGgtatatagaaccccaaatagttacaaccagaaacaaaaattctCT--ATATACACA-ATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACCCAAAAAATTCTCAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaa---------aaaaaaaaaaaaaaaaaaacctataaaaataaatacaccaaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTGA------------GACCCAGCAGTATGCTGTATATCAGAAAGTCATTT--------AATCCAAAAAACATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGA-------TTACCACAtattaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGACTTAGAAGATCTGATATAT----------ACAATTATATTGAAGAACTTCAATACCACACTGAC----ACAAACATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGA---ACATTCT--AACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaagg--taagacCTAAATC-------TTAGAAATTAGGA-------ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAATAAGATATAAAGACCCTGGAATAATACAGTCACAGCCAATGAATTA-----AACCATAAATAAGAACATCTATGAACAAATATAAACCCAG-----ACTACGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTTGACACAGAAATAGCCACATC-TTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAGCAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGtca---cacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAA

a score=21433
s chr3           45163630 2702 + 160039680 aaagaaaacccaaagcgaggcaaca---ctggagatagaaaccctacgaaag-agatctggaaccatagat-gcgagcatcagcaacagaataCAAGAGATGGAAGAGAGAATCTCAAGTG-----CAGAAGATTCCATAGAGAACATTGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAA------CCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCC-AAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGT--AAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAG-ATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCT-----AACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAA-ACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGA----CACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATG--GAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAA--AGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACAT---CTAAAAGCCCTAGAAAAAAAG---GAAGCAAATT-CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATA-CTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCAT------CTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagac------caatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgcta------------------------------------------------------------acca--------------------------------aatccaag-----------------------------------------------------------------------------------------------aacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagat-caggaatttaaggccca
s HiC_scaffold_1 89594003 2647 + 233722169 AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaagaaaagat---aaacggGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCA--------------tggaaaaagaactaaaaatgaaagattaaga-----------ataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACT-AAAGCATAAGC--ATCTATCCATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATG-----GCTCATTTAA-AGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCCATATTT-----CACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGC-----AAAGAAACTCATGACAAGT---------AAGCCAGCattccagaaaatatt---------taaatatcacaaaGACAATGAGTA-----TAAGACCATGTAAAGTATAA--atttaattgga-aaaataaagacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaa--aaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAAT-CTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGAT---CTG--GAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaacaaaaatcttt---aagtGACAAAGAATGCCACTACACATT-GTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGGAACAC-AAATGCCTGCACATGttatttcataaaacaatttCACTTGA--AAAGACAAACACAT----------CCCCAAAAATATAGTAGGGGACTTCAACAC-----TATTTTTATAag-taggtcaactagacaaaatatcaacaaagaaacataAGAGTTAGACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT--------------------------------------TTTAAA-----------GTTCTATTGCATCACAatggaatgaaacta------------gaaattattaggaaaaaaattacatgaatatGCTGAAATTGAGTTA---------AAATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAAAAGCAAGAGTGG-------------------TTCCCAAAAAATAACCTAATGGTactaaagagaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAA-------CAAGTaagatatataaaattaaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=19389
s chr3           45163761 1789 + 160039680 AGAACATTGACACAA---CAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACT----CAAAACATC---CAGGT--AATCCAGGACACAATGAGAAGACC-----AAACC---TACGGATAATAGGAATTGATGAGAA---TGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAG-AAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAG--AATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCC-------------AGCCCAG-GCTACTATACCCGGCC---------AAACTCTC-------AATTACCATAGATGGAG-AAACCAAAGTATTCCACG---------ACAAAAACAAATTCACAAAATATCTTTCCA-------CGAATCCAGCCCTTCAAAG--------GATAATAACAGAAAA-GAAGCAATAC-----------------AAGGACGGAAATCACGCCCTAGAAC-------------AAACA-------AGAAAATA------------------------ATCATT--CAACAAA-------CCAAAAAGAAGACAGCC-----------------ACAAGAACAGAATGCCAA--CTCTAACA-------------------ACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGC-------TGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGG-AGACTTCAACACACCACTTTCT---TCAAAGG-----ACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGA------AAGCCAACA-------TTCCCA------------------TGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAA-AAAGGAA---------------GCAAATTCACCCAAG---AGGAGTAGA-CGGCAGGAAATAATC---AAACTCAGGGGTGAAATCAACCAAGTGGAAACA-------AGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTT
s HiC_scaffold_1 55628203 2002 + 233722169 AGAAAAGTGTCACAAGTTTAGATATAGCAGATAATAAACTCAAAGGCATCCTAAAGACAGTAAAACACCATGCAAGTTGGATTCAACA-ACAGCTAGAAGGCtcataaaaattgaataaaagaaataagaataaaagaaaaactggaagat-----gacTAAAGAggcataaaatttatttactgaaataatagcaaaaaaactTTTTGAAGGTAGGGAAATAATTCACTATG--TAAATATGAGGTATCTAAAACCCCAAAATAGCTAGAGCTAGAAC--ATCTGCTCTTGACAC---Ttcctaatcaaaattccaga--aatttaagGAAATCagcaaatattaaaagctgctaaagAAAAGTAGCAAGATACTTATAAAAGCAAGCTTATTAAAATTAtgacagatttctcagcacaaatttTAAAGGCCAAGGGAGCTTAGAATGAAGTTTTCAAGCCG-TAAAAGAAAGCAGTTGTCCAGGAaggggtataactcagtggtacagaacCTGTCTGGTAAGTGGAAGGTCCTGCGTTCTATTTGCagtacaaaaagcaaaacaaagcaaatcaagcaagcaagcaaacaaacaaacaaataaaaacgcTTGTCAGGCTAAGCTACTCTAGCCCACAAAATTAACCTCCAAAACTGACAGAAAATAAAGCACTTTCATGGACCTTTGTCCCAAAGGTCCCAAAGAATCCCAAAGAACTACATGCCCACTAaaccagaatttcagaaaatatataaagGATTCATACACAGGGAGACCATCAGCACCAAAGAATCTCCCAGAATGTATACAACTGTCTGGAAGAGTAGTTAAATAGAAAAGGAGGGCAAAACCCTGACACAGTAAGCATTGGAAAAATGCTGGAATGATAGTACCCAGTAAATACCTTAC---AATAATTCTCAGTGTCAGTGATCTTAGCTCCACAGTCAACAGACTGAGACTAGCAGATTGgatcaaaaatcaaaatgcaaccatatacacacacatatgtacagtAGATACActttattcaaaaggaaaataatagagtAATTGTGGAAGGCTGGAAAATGATACTCTATGCATCTGGGGCAATAAAGCAAGCAGGAGGAGCTATCTTATTTTCAGACACAACAAGCTTTAAGCTAAAACTTATTAAAGAC-ACAACGATGGATACTACATACTGGTAAAGGGAACAGTTCAAC-AGAAGAGATGATAACAGTAAATATCTGAACTCTAAATGTTGGTATGACCAATGTCATTA-----ACACTACTGGACCGCAAATGACAGATAGACACCAGTACAACCATAGTGGGTGGATTTCAGTACACTAACCAATAGATGAAAAGTTAACACAGGTCAAGTAGATGAAAAGTTAACGAGGAAATATCAGAGTTTAATCATACCATTAAGTAAGTGGACTTGACAGAAATCTACAGAGTGTTTTATCCAACAACAGAATG-------------------CAGCACGTGGACTTTTGCTAAATAGAACATACGTTAGGCCATAAAGCATGCCCAAATACATACCAAATAATGAAGA--ATCGCATGAATTCTATTGGATCACAATGGAGTAAGAgaga-aatcaatggaaaaacaaacaacaaacaaaacaaaacaacaataaaactcCACACAGACATTACACAAACACTGGAGATTAAACAATATGTTACCAAATAACCAATGGATCATAGCAGAAgtcagggaagaaataaaaaagattctaGGATCAATTGACAATGGAAGCACAATATG-CAAAACATAAGGGACTCAGTGAAACAG--TCTAAGTGGGAAGGTTATGGTCCTGAATGCACCCGTTAAAAAAT-TAAGCCACcctaaataaataacataatgacAC--CTGCAgcttttacaaaacaaaagaacccaATGACTTCACTGCAGATTCTGCCAAACTTCGGAGAAGATCTAAAGCCAATACTCCTTAagctcttcaataaaattgaaaaggaaggagTATCTTGATACCAAAACTCAATAATGATTTAACCAAACAAAGAACT

a score=4099
s chr3            45163782 139 + 160039680 AAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAA
s HiC_scaffold_1 139027879 132 + 233722169 aataaagaaaaagatgtcAGAGGAAT-------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAA

a score=47071
s chr3           45163823 4122 + 160039680 [encoded data, 4580 characters]
s HiC_scaffold_1 55842503 4197 + 233722169 [encoded data, 4580 characters]

a score=7347
s chr3           45163844 835 + 160039680 AGAAGACCAAACCTACGGATAATAGGAATTGATGAGAA----TGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA-AACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGAT----AATAACA----GAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACA-AGAACAGAATGCCAACTCTAACAACAAAAATAAA-----AGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGA--CTGAAGAAACAAGCTGGAGTA
s HiC_scaffold_1 66783218 707 + 233722169 AGAGGACTAA-TGTAAGGTTAActggaataagtgaaaaattcTGAA-----TTAGCCCAAAGGGCACACAAATTTTATGTATAGAA--ATAGCCACAAAAT------ACATAAGACAA-------------------ATGAGGCATGTAGAACCCTAAACAGTCACAATCAAAAGAGAA---CCTCTCCACATAACATCAtagtcaaaataccagaaattcagtacaaggacagaat-ttaaaagctgttagagaaaatg----aGTAAT--------------CCATTAGAATTATGGGAGCTTTCCCA----------------------------------ATGT----------------------------------AGATTCATACATCTtacaaaagtatctttcaaaaatgatggagaaataaggaatCGTCATAACAAACAACTCCtttaagaaattcatggccactaAACCAGTGCTCTAAAAAATTCTCAAgaatatcctagaaagagacaa--caaAGCCAG----CAAGGCCCAAAAAATCTAGTAGAATGAGTAC-------ATCAAGTAGGGTGAAGCAGAAGAGAGCAGAAAATCAAC----AGGATAATAATACATTGACAGGAATACATTCATACCTTTCAGTAATTACTCTCCATGTCAATAGTCTTAATTCCCCAGTCAAAAAACACAGAATGGCAGAATCAATCAAGAACCAAAGCCCAGTGTTATGCAGTataca-aaaatgcat-ttaataaaaaagaaacaca------cagattaaaaatc-aaaggacaaTATCACATGCAATGGGATCCTGGGGAAAAAAGTTGGAGTA

a score=77101
s chr3            45163859 3951 + 160039680 [encoded data, 4323 characters]
s HiC_scaffold_1 135385600 4017 + 233722169 [encoded data, 4323 characters]

a score=80798
s chr3           45163865 4373 + 160039680 [encoded data, 4795 characters]
s HiC_scaffold_1 10897712 4645 + 233722169 [encoded data, 4795 characters]

a score=7584
s chr3           45163865 540 + 160039680 ATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAA-ATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAG----AAGCAATACAAGGAC--GGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCAAC
s HiC_scaffold_1 87509150 502 + 233722169 ATaggcataaaagaaaaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAA---CCTCCC----------CATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC-----------TCCTGCAAAA---TTAACTTTCAAAACTGGCTGAA--AAGACTTTTCATGgcaaaaaaaatactaaagaaatacATAACCACAAAACCACC-------------ATGGCAGGAAATATTCAAGGaactcagagacagagagattatCCCGAAGAGCCCCAAGGAAAGTATACACCTAAC

a score=4996
s chr3           45163873 160 + 160039680 TGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACAT
s HiC_scaffold_1 59227050 150 + 233722169 TGGTGAAGA-GAAAATTAATGGTGTAAAAGGC---------TGTTCAATAAAGTAATAACAGGAAACTTCCCGAATATTGAGAAAGATGTGGACATCTTTGTATAGGAGGTTTACAGAATCCCAAGCAGACAAGATCAGGAAAGCGCTTCACCACAGCAT

a score=26196
s chr3            45163884 1679 + 160039680 AAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAA--GCCTACAGAACTCCAAATAGAC-TGGAGC-AGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAA---AATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAA----TTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACA---TTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTT-----ATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATA---TAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAG---AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291791 1571 + 233722169 AAGAAATACAGGATAATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgcAAATAA-------ATGAT-ATACAGGGACtggatttaaaatgcaaaataagcaTATAGCCAGAAAAGACTCTCTTCACAACATGT---CATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCAATAAA--CTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTACTGCTAAATCAGTTTTGCAAAACTTACTGA----------GTTTTGCAA------AACTTACTCAGGAGAGCATGAAAAGGAGTAAATCTT------------ATTAAAAGAGTCAATAAATCAGAAT-------CAAACAATCAATGAAATAACAGGGAGCAATACATACCATTCC-----------------AACTGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatataaacagca-------GCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTC--------ACAAACAGGCTAtctaaaaaatcagcaaagaaacaattgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGT---AAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACGGT-----------------TAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=28957
s chr3            45163896 2416 + 160039680 TTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCA--TACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGC-----ACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGA-AGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAA----CAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAAT-ACAAGGACGGAAAT-------------CACGCCCTAGAACAA-----ACAAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACT-CAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTA-----------------------------------------------------------------------------------------------------TCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAG--GACAGATCGTGGAAACAGAAACTAAACAAGGACA--CAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG----CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGG-ACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGA----AGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcag---accaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgat--catctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaa
s HiC_scaffold_1 116834066 2333 + 233722169 TTCAAAGGTCATAAAACATATTCACT-------TATAAGAAGCTTTTCCAAAGCTAGGTAAATAACT--CAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATAT---------ATCATAA--ACAAATTCTAAAtatccaacaaaga-aaaatacaaaaagttgtTACATAAAAAG----AGCAGCA---AAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATACAATAGAGAAAATAGT----TAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaattaaacaaaaggaaaaaaaacaaaagaattggc-----ATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAAT--ACTGAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagatta----atAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGAACAA--CAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCACAG---------------------AACAAAAACT-------------------GCTGTACATATAAGGAAAAACATATCAAT-------------------------------------------ACAATTACAGTGAGAAA-TTCAATAACCTACTCTC---AAAACTAGCAggtcaacaagacaaaaaattagcaaaactTATCAGTTAAAC-----AATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAACA-----GGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgat-----ttttaaaaa

a score=104165
s chr3            45163923 4305 + 160039680 [encoded data, 4833 characters]
s HiC_scaffold_1 195237037 4679 + 233722169 [encoded data, 4833 characters]

a score=26298
s chr3            45163944 1969 + 160039680 CAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATC-----AGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATT-CCACGACAAA-AACAAATTCACAAAATATCTTT--CCACGAATCCAGCCCTTCAAAGGATAATAA-------CAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCA-----------ACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGA--CTGAA-GAAACAAGCTGGAGTAGCCATTTTAATATCG----------------------GATAAAA--------------------------------------TCGACTTCC-----------------------AACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT--------TAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACAC-CACTTTCTTCAAAGGACAGATCG--TGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAA----------------------------------------------------------------------------------------------TCGATACAAAAATA---------TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA-AGAAGAAACGG----------GAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG-----------CAAATTCACCCAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT----CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881350 2284 + 233722169 caaaaaaaaaaaaaaaaagga--------aagaaagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-------GCCATATTGTTCTCTAAGTACCAGGAATTCATCA--CAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTCCTt---cagaaatgaataaag-aaagtatttccatgacaaggaacacatctaaaaaaaattcatgaccatcataacagcatttaaaaaattctcaagtgTAAcctagaaagaaataatg--aagccAGCAAT---ACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaaggaaaaggaaaaaataaggagATCAGCAGAAGGACTGTAATGG----gatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA----AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggtatagacat----gaaaaaatcaga-taaaca------ccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAGACTCAAAAcc------atacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=32306
s chr3           45164052 2425 + 160039680 CAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAAT-------------------AACAGAAAAGA----AGCAAT-------ACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTC--AACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTA---------------CACAAACAGGACCCA------------------------------------------ACGTTC----------------------------------------------TGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAA-AGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATT----GGTCACAAAACAGGCCTCAATCGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAAACGG--GAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAA--GCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAAAGGGCACA------GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT-----------------GAAGAAATCCCAAAC-----------ACCATCAGATCCTTC----------------------------------TACAAAAGGCTAT-----ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAA---AGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgat-------aaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagta----gccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaag
s HiC_scaffold_1 77435158 2503 + 233722169 caaaaattcaaaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaattaatgaa-aaataaagacctCCCTTGATAAGTGTAAATTATAGACATTTATGACCCCTAATCCAGCATTGCAGAAAATACTTAAGTTAATcttaaacacagataaaaaagagaataacaattatgagaccaaagaaagaaat---gtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCAAATagtagaaa-----aaaaacaaaatg---------------------ataggaattagTACATACCTTCCACAACTATCA--TAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG---ACAG--------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAAT-----ATACACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagta--------------gaaaagaaaaca----catggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaata----aataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaa----aaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaa--------atattttaaaaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTGTTA----ATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=45902
s chr3           45164094 2639 + 160039680 AGAAAGGTCAAGTAAC---ATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATT-CCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATA----------------ACAGAAAAGAAGCA----ATACAAGGACGGAAATCACGCCCTAGAACAAACA--------AGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGA-ATGCCAACTCTAACAACAAA--AATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT----TAGAGACACTTTAG--TAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTT---TTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGA-----TCTTCAATAACAACATAAATAAT---GGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCAC-AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC----AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatcca---------------------------------------------------------agaacaca--------------------------------------------------ttaaagcaatcatccatc------------------------------------------------------------------------------ctgaccaagta---------------------------------------------------------------------------------------------------------------------------------ggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatga-taaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacaccctt
s HiC_scaffold_1 66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatat-aaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT--GGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAG---CTAAAAACAC-----AGAACAACTAGTGAAATCAGTGAATaaacat-caacaaagaaacataaggaaaagaaaaacaaaggatacaccaac-ataaaaagaaagcaatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagataa--------tCAAAGGGA------GAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACACA--------AGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAATAAACACTA--------ACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aacaacaacaaaactgaacTATT-----CCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaag---tatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagttcgA-GGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAA--AGAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaa-taaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaaga----aaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=27318
s chr3            45164125 1732 + 160039680 TATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATG----CCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA-----------AAAGAAGCAATACAAGGACGG----AAATCACG---CCCTAGAACAAACAAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAA------CTCTAACAACAAAAATAAAAGG--AAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGA-CACT--TTAGT----AAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGA-ACATTTTT---TCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGG-------AAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAAC
s HiC_scaffold_1 227404805 1640 + 233722169 tatcagaatttcagcagacttctcaatacaaatctTAAAGGCCAGAAGAGCATGTGAAG----TATTTCAGCACTAA----ACACAAATAACGTCCAACCTCAGCTAACCTACCCA-CAAAGCTTTCTTTCAGAATAGGTGAAGAAATAAGAGTATTTCACAAAAAAGACCAGCTCAAGAGACTT------ATGACTCCAGCATTCCAAAAAGCACTCACCAATTTCCTAGGCAGAAGACGTGAAACCAAAACAGGTCAAAACCTCGTGACACAAAAACACCAAGTAAGGTCAACAGGtaagcaacaaaaaataa--------caagaaaagaaaaataagcaagtcAGTAACAGAGAAGGCAATAGAGCAAACAACCAACACTTCTCAGCGG-GCCTCTCAATGTTAATGACCTCAATTCCCCATTTAAAAGATGAGGATTCATAGACGGGATCAGAAAACAGAATCCAACTGTCTGCAATGTGCAAGAAGTTCACCTAATGCAAACAGatgttca------cagactgaaaatt----aaaggGTACTTCATGCACCAAGACCT-GGAAACAAA-TGGGGTAGCAACTTTAATCCCAGAC-ATGTAAACTTCAAGCTAAAGCTGACTAAAAGAGACAAAGGAGGCCACTACACCCTGCTCCAGGGAAGGATGTATCAGGAAGAAA---CACTGGTAAGTATTTCTTCACTGAGTATCAGGGCACCTACCTTCATAAAACAGCACTGCTGAATACAAAAGACTCCAAACATG--------TTAACACGCCCAGAGTGGG-GATCTTAGCACCCCACTTTCAC--AAAGTCAGGTC----AACTAAACAATAATCACAGAAACATTAGAATTAAACCACACCCTCAAACATACCGGTGTACTTGATATCTACAGATAGATACCTACATCCCAACACAGCACAGTACACGTTCTTTTCCGCAGCACACGGTACTTTTTGCAAGATAGATCACACATTAGTCCACAAAGcctgcttaagtaaatataaaggttTTGAAATTATCCTGTGTGTACTCTCAGACCACCATGCAATGAAAATAG-----AGTTgcagaagaaatagcagaaaaggTAGAAGCATCTGGAAAACTAACAACACACCTATACACAAC-CAGTGATTATAGAAAAAGTCAAGAAA--------------TTTA-----------------------AACTCACCAAAAACTCTGGGACCCCAAGAAAGCAGACCCGAGAGAAAAGTTCATTGCAAACAATGCCTCCATCAGGAAAATGGAGCAAGCTCCAGTGAATAACCCCATGAGGAATTCTAAAATACTTGAGAAACA-----CAATTCCGGCCAAAACAAATTAA-GGAGGGAAACTAT-aacattagagcagaaatcaatgacatggaggctaaaaacaaacaaaaataatgcacAGATCGGCAAATCAAAgcactggttctttgaaagaataaacaaaacagataggCCCG----AGGACTTACCACATAGTGCAG-----------------------CTAGAAATGCAAAAGATGAAGTCACAACAGACACTGTCAAAATCCagaatatagtaa----ctactttaaaaaacTCAATTCCAACAAATtggcaaattttaaagaaatag----attcctagatgcatataaattaccaaagctaactcaagaagacacaaatatgCTAGACAACCCAGTGACAAGCAATGAAAtcaacacagtaaaaaggaaTCTGTcagc

a score=49768
s chr3            45164171 3722 + 160039680 AGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA---------AACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATA-----------ATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAAC---AAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTT---TTCCT----TAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTT----CCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAA---AAGGATATACC--TTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA-CAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACA-ACACATCTAAAAGCCCTAGAAAAAAAGGAA----GCAAATTC---ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA---CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcg--atgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatg---------ataaaagttttggaaagatcaggaattt--aaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaa-gctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatata-aaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgt----atgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttcaactattggaacgagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatg--------aacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcgtgtagaagaatgctaattgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgaggaaaagccttgaagatatgggcacagggaaaaaattcctgaacagaagagca----------atggcttgtgctg-----taagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatct-ttaccaatcctaaatcagataggggactaatatccaatatatataaagaactaaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttgctggga
s HiC_scaffold_1 228955087 3367 + 233722169 AAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACAA---------TCATCAAACTAGGACTACAAAACATATTCAATCCTACACAGCAAGAGGGAAAAACTATGAAAAAGGA---TAGACTCAATAATTAATCTAAATGGGAGAGTTGTttcacaagagagaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaattaaaatgataTCTATGTAATAAGTG---TGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATAC-------TCCTCAAA---TAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG-----TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT-ACCCATAT---TGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGG--GAAATTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAG-GTCAATGAAAAAA------AGTTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAG-ATGATAATAGGCCATGAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTT-----CCAAA---AGCAatacaataaatcaataa------atgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgt-aaagagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCCACAGAAG-ACTCTCAGAACTAATAGATAAATTCAGCCAAGTG---GAATATACaaattaatacacaaaaatcaagaacattacccaaagtgatatatatata---------------------------------cttaataa----aaataaattgaaatatc--------------------------aaagtttttttttcataacTAGAAAGTCAAGTCT-------------------AAAATTCCTAGAGA-----------------------------------------------------------ACCAAAAGAGACCCA-------------------------------------------------------GAGTAGC---CAAAGCTATCCTgagcaacaagaaaac-----aaacaaacaa------caacaacaaaaaaa---caggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACAT-AGGGGAAACACAGGACCCATAGGCGCAGGG-AAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaagaaAA-----TAATGAGCCAA------CTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACT---CAACAGGTGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=43182
s chr3            45164226 2632 + 160039680 TACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCAC-GACAAAAACAAATTCACAAAATATCTTT-----CCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAA-----TCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAA-CAACAAAAA---------TAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT--TAGAGACACTTTAG----TAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTA--AACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCA--------------------CCATGGCCTAAGACT----GATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCC--CATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAA----------------------------------AGAAAGAAATTAAAGACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCT---------ATGGGACACAAT---------------------------------------------------------GAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCA-AATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAG-ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatc-ctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgta---atccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccc-taaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag--tcacaaataat--ataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctga----agaaagaaattaaggaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAAA-----TTTTGAAGACCACTAAGTGAGCACTACAAAAG-TACTTAAAGAAATCCAG-AAGACAATGAGG----------CCCAAAACATCAAAGAGACTAAAGGAATGAATACATTAATCATGGAGAGcaggaaagcaaaagcaaaaattaaaaactaaacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCAT---CAATAACAGGTAC--ATTGAAAATTagatgatggaaaacaatacttcatgcaatgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAATACTGCTGCACATAGAGGTCAGA---TAAACAGC----CACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCAACTGGACA-AAACTATCAGCAAAGAATATGAGAGTTGAACTATACCTCTG-AACAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaaccatGGCAAAGGAATCACAGAATTTTCTCAACCATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatggataaaaa-------aagaat-------tcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaa---ttgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca-gaaatatagca---------------ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAG------------TGGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaactt-GCTACATAAAGACCTTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=23641
s chr3            45164381 2301 + 160039680 CAAACAAGAAAATAATCATTCAACAAACC--AAAAAGAAGACAGCCACAAGA----ACAGAATGCCAACTCTAACAACAAAAATAA--AAGGAAGCAACAA-------TTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCT--CAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACT-TTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAAT-GGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCAT---GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACC---AGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAA-----------GAAGAACTATTC------------------------AAAGAATTAACCAAACGAGG-----------AGTTGGTTCTTTGAGA----------AAATCAACAAGATAGAT------AAACCCTTAG--------------------------------------------------------------------CTAGACTCAC------------------------------------------------TAAAGGGCACA-----------------------GGGACAAAA---------TCCTAATT---------AACAAAATCAGAAATGAAAAGG-----------------------GAGACATAACAACAGATCCTGAAGAAATCCC-------------------AAACACCATCAGATC---------------------------CTTCTACAAAAGG----------------------CTA--------TACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatag----agaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttct
s HiC_scaffold_1 115153520 2420 + 233722169 caaagaataaaa--ataaatcaaaaaatgtgAACAATAAGACAGAGACAAAGTAACAAAGAATGtacaaactaacaacaacaatAGTGATAAAAGTAATAAACTGTCTTTACCTACCAGTAATGACTTTGAATGTAATTGGACTAAGCTCCCTAGTTAAAGGATGTAGACTG-CTGAATATCTAAAGTAACAAGACC-AATTATATATTGCCTATAAGAAAATCATTTCACATGTAAGGACACAAGTAGACTGATGGTGAAGAGATGGAAAATCATATTCTGTGAAAATGAGCAAGAGG-----GCAAGAATAGCTATGCTTACATTAGACACGATGGACTTCAAGTCACAAAAtgtaacaaaagacaaaaaaagtcacTATAA---CATAAAGGGCACAATTT--------AAATTATACCAATTCTAAATAT--ACGCAATAAACCTTGGAGCA--TATACTAGATAGAGAAAATACTATTAGATCTacgtggagagagagagagtaattCAATAATAGTAGGAGATTTGA---CTCCAGTTTCAGAAATGGGCATATTATCCAGAtagaaatcaaaggaaaatat-------cagACCTAAACTGCTGTCCAGATCAGGCCTCAGAAACATTTATAGAATGTGTCACCC-AAAAGTATAGGGTACACCTTCTTCTCATCAGCACGTAGAACTTTTTCCATGATAGGTTACATGTTAGTATTTGAAACAAGtctcaacaaataaaaata-attcaaaatgagacattaagtattttttt-taccTCATTGGAATAAAGCTAATATTCA-CAGTATGAGAAGTTTTCGAAACTATGTAAGCACCTGGATATTGAACAACATATTATTGAACAATGAATGGGTCAAGGAAAGAATTTAAAAGGAGGTTAATAAATCTCTTAAAACAAGTGAAAAGGGAAGCACAACATACCACATCCTATGTGTGACATCACAGGTATTTCTAAGAGAG--GTTTATAGCAATAAATGCCTGCatcaaaaaat------ttacaaatatctcaaatagTTTACCATTGCACctcaagaaaccagaaaaacaatatCAAACTAAGTCCAGAATTAGTGGAATGAAAGGaataataaatatcagagcagaaatgagtGAAAAAGTGACAAAGATATGTAaggaagagtttttttttaaaggcttttagATAGATTAAAAAGCAAGATTCAAATAAAGTCAGAGGTCATAATGGAGACTTTTAAATTTATGTCACAGATTAACAATAGAGATAGCAAGAGACCCTTAGAAATAACCATATGCTAATGTATTTgtcagttttctgttactgtaatgaACACTTAATATAAAGTTTGTTTGGACTCACATTTTAGAGTGTTTGATCCATCCGGATCTGTTGTTTGTAGGCCTCTGGTAGGGAGCAGGAAATCATGGCAGAAAGACATggtggagcaaaactgcttaCCTCCCcatcagaaactgaaaaaaagtgaaaaaagaaagggctggggtctCCTTAGTCCCTTCAAGGGCATGGCCCCAATGACTGAAGTCTTCCCTGTAATTCTTCGCTTCTCAAGTTACCACCATGTCTCAATACTACCATTCCAAGGATCAAGACTTTAACACAAgggcctttggggaacatttcagatctaaactgTAGTACTCAA-GAAACTGGAAaacccagaagaaatggataaattcatgAATACAAAAAACCTCCCTaaattaaatcataaataaa-----aagttaaacag----atGATA---AATGagattgaaaaaataatgaaagttctCTTG-------------------TAGAGTAGCTCATTGCTGTATTCTGCCAAACATTTAAGGAAGAACCAGTATCAATTCTTCTGAAATTactacaaaaaaatcacagaggaGGAAATTGTTCCAA---AGTTGATCACACCATCA--------------AAAC--CAGACAGAT---GCAAGGATAGTTCCAAACATTCAGATCAATT------------------------------AATGAGATAC----------------------CATTA--------------------CGATTAGAgttaa----aggga-----------------aaatgaaaaaaaaactatgataTC--TCATATTAACAAAATCAAGGATAAAAACCTTATGGTCTTTTCCATAGATacataaaaagcatttgataaaattcaat-ccTCTTCATGATAAA------------ACAAGTCAATTGTAGAATATACCTAAACACGGTAAATACCATATGTGACAAACTCACAGTGGACATCATATAGAACGGGAAAATTCTGAAGGTATTCCTGT--AAGTCTAGAACAAGGAGAGGTTGCccacttttactatttttatttggcATAGTAC---------TAGC---AACAATTAggtaagagaaagaagtaaagtaCTTCCATATTAGAAAGGAGAAAGTAAAACTGTCCTCATTTGCAGGTATCACAATCTTATATAGAA--AACCTGAAAACTTCAAT--AAAAAATGCTAA--CAAATACACAAATGCAATGAAGTTGCAAGATATAAAATCAGCATACGAAAACTGGTAGTGTTTCT

a score=33346
s chr3           45164477 2493 + 160039680 CTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACA----AGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACA-AGGAGGGACACTTCATACTCATCAAAGGTA-AAATCCTCCAAGAGGAACTCT--CAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGT--------------------GGAAACAGA----------------------------AACTAAA--------------------CAAGGACACAGTGAA------------------------------------------------------------------------------ACTAACAG------------------AAGTTATGGAACAAATGGAACTGAC------AGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGA--TCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaac--cacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagca-----atttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagta---gctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaa---gtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttcaa
s HiC_scaffold_1 42973449 2208 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGT-----TTATTAAATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagacaGAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAAT----------AAATTG-AATAATTTCTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaaca------aaaccaaactaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgggga-------------------------------------------------gaatcatcacaagtttgaggtcatct---------------------------------------------------------------------------tgGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAG--ACTTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTA--------AAAATACTCcag---gaatcaacctaatgaacaggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAA

a score=24941
s chr3           45164499 1820 + 160039680 ATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAAT--TTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCAT---------ACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCG---------------ATACAAAAATATTGAAATTGTCCCAT--GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATAC------CTTGGTCAA---------------GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAAACGGGAG------------------------------------ACAGCACATACCAGCAGCTTGACAACACATCTA----------------------AAAGCCCTAGAAAAAAAGGAAGCA----------------------AATTCAC----CCAAGAGGAGTAGACGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGAT----CAAG----TTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAG--TCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcagg
s HiC_scaffold_1 89719555 2099 + 233722169 ataAATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTAAAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaaatattgggcataaatattaaaa---atacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTCTCAAG----CAGATCAACTAGCcaaaaattaaccaaaaatatTAT--AGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaa------------atagacAAAGACTCAGACGTTTGTTAAGTATCCAAAACACCTaatgaatcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAAT--------AAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgt-taaaaagtttagaaaagaaattgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=8677
s chr3           45164709 588 + 160039680 CAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTC----AATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA
s HiC_scaffold_1 25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGA-CATAAAGAGTCAGATAGACTTGAATATAGCATAGTTGGTAACTTCA-TACCCCAGTCTC---------------------ACAATAATTAGGTGC------------ATTAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGCGGA----------ATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGG---TCAATAATAAGTAATGAGAATGAA

a score=20899
s chr3            45164715 1628 + 160039680 AAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACC--TTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCC----TCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCC--CAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-GAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatgg--tttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattca---------------tgataaaagttttggaaagatcaggaatttaaggcccataccta--aacat
s HiC_scaffold_1 213142432 1389 + 233722169 AATGTGAGCAGAAGAGCCCAAGAAGGTGACTACATTTTTGT-GAGGGAACAATTTCacaagaagagataataattataaaaacatgCGTACCAAACAACAGCACACCTGACATCATAAAACTAATACTACTGGA---CAAAA---------------ACATGATTAGAATAAG-GATCTCAGcagcccactgtcac--aaatacagATGAACTATACTAAAA-TCAACAAGTAAATATCACAGTTTACCGAAACCTTTGAAGAACTGGACTTGA----tatttatagagtgttccaccc---aacaacagaacatacattctttttagcagcacatggaacatgtTACAAAATAAACCACACGCTtaccaaaacaaaatgtttacttaaataaatgagaattgAAATTATAATGTGCATATCATTAAATCATAgggcaatgaaactagaaattaatggcaaaagaaaacatagaaattatgcaaatacgTGGATATTAAACAGTATACTCTTGAATAAAATTAATGGGTTACACagtgaataaaggaaaaaaattaa---ttcctAGAACTAAACATTAATGctaatacaacataccagaagtTATAGAACACAGTGACAGCATTCCTAAGAGGGAAGGTTACAGCTGTGAATGCCCATGTCAAAAATACagaatgagtcaaaataaa---------tagcAATGCACCTTAAActcctaaggaaaa------------------------------------aaataat------------------------agtg-----------------tCAAAGA------CAAATG----------------------------ATACTGACATACCCT--------------------------AACAAAACAATAATGTAC-----------------------------------------------------CACCTT----TTTTCCtagaaaaga----aatc--taaaattgtAGTA--TAAATAGTAAGGAAAAATTCCT------------------AAAACTGAAGCAAAAAGTTATAAGCTACCTAAATAATCCAGTAACAGGCAataaaattgaagcagtaataaaaaatcCCTAACAATTAAGAAAACCCCA-GATCCGATGGATTTATTGTTGAATTCTAAAAGACCCTTAGGCAAAGATCTGACACCAATACTCCTCAGGTTCTTTAGTGAACTGGAAAGTGGAGAAATACTCCCAAAGGCATTCCTGGAAACTAGTATTACcctaattccaaaaccagacaatgcTCCAATcacaaaaaagaactataggacaatctctttaatgaatatagatgcaaaaatcttcaacaaggcactggcaaacagaatgcaggaaatcaaCAAAAAGATCACACATTGTGATCAACTAGTCTTTATACCAAGGATATAAGAATGGCActgcatgaaaaaaaaacaataaatgtaacacatcacataaacagaat----gCCTAAGATCACATAATCATTTAAATAGAGACAGAAAATTCCTTTCACAAAATCTAATATTCATTTggatcttttttatctttaaaaaaaccttgaaaaaaaTAAGGTCAGTGAGTCCCCAACTTATGAACAT

a score=10570
s chr3           45164986 580 + 160039680 TGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACC-ATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAA--AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 96522418 566 + 233722169 TGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTTAAac----acaaaaatactgaaataatacAGTGCATATTAATGGGTCATa-----ctaaaa-tgaaattagaaagccacaaaaa----agaaactgctcagatCCATGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaataca--aatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=13126
s chr3            45165156 597 + 160039680 AGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACA--------TCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC--TAAAGGGCACAGGGACA----AAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCC---TTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGACGAAATGGACAAATTT
s HiC_scaffold_1 121849223 588 + 233722169 AAACtgatttttcatgaaaataaaaacaaatatcagTTAA--GTGTTATTGA---TTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGA------ATAGCTCA-ACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTATttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaattt

a score=13507
s chr3           45165204 858 + 160039680 TGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAA------------TTCACCCAAGAGGAGTAG--ACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaaca----aagatagagaacttcagaccaat-ttctctt
s HiC_scaffold_1 77585700 816 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcag-gataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGA---CAATTTAAT--ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt

a score=10756
s chr3            45165285 465 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattcacacatcaggaaa------acagaac-----------------------ctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacataaattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=11666
s chr3           45165690 1390 + 160039680 AGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaag------gctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttca-actattggaacgagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaa--agtcttctcaaggataaaagaacttctggcggaatcaccatgccagacct
s HiC_scaffold_1 45014870 1015 + 233722169 AGGTATTTTTGTTGAAAATTGTATGCTAATAAATTGGAAAATCGAGACAGAATAGACAAGTTTCTGGACACATACGACCTACCAAAATTGAAC----ATAAAA------ATCTGAATAGATTAATTT---ATAGGTAACTTAAATCAGCAATTATAAGCCTCCCAA-CATAGAAAACTCAGGAC--------TTTAGTATTGAATTTTACCAAAC------------TTTAACCCCA-GCATGTGCAGATTATTGCATAGAattgaaa-agaaatcatttaa---aactTGTACAATGAAGCCAGTATTACCCTGGTGCTAAGAC------------------------------------------------------------CAAAAACTCAGAGTAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTATAGAAGGAT---------------CATGTCTCAGCATAATAAAGGCTACATATGACAACCCA-CAGGCAACATCACCCTGAGTGGAAAAATG--GAAAGCACTTCC-CTCAGCCCGGGAACATGGCGAACGTGTTGTCGCTCACTTCT------CTTCCATAATATGATGGTAAAAATTTCAGCCAGAACAGTTGGACAAAAAAC----ATGATAGACATACAAATAGGCAAGGATGAAATCAGATTGTGGGTGTGTGCAAATGGTATGATTCTTTACACAGGAAAAGCCAAGG-CTCCGTTAGAAGACGACTGGAATTTATAAA----TGCAGCAGAGCAATAGGACACGGCAGTAGCATTCCGAAGCCAGTGGCTTTTCTGTTCACCGGTAATGAAT-TGCTGAGAAATAAAGCACGAACGTAATCCAATTTGTAGTAGCCACAAAAGG---AGAAATTCTAGGAATAAACTTAACCGAGGAAGTGAAAGGTTTCCACAATGAAAACCATAAAATTCTGAAGAAATAAATTGAAGGAGAC----------------ACTTCTCGTCTTTATGGATTAG------------------AATAGTTAAACTGTCCGTAGCA--CTACAGATTCAGTGTGATCCCCATCAAAATATCGAC---ATTCTTCGTAGAACTAGAAAAAGATCCCTG-AAATTCACATCGAACCACAAAAGGGCTCAAAGAGCCAAAGTAGTCTtggaaaaactaacaaaaaagttGAAGGCATTAAAATACCTGATTT

a score=35330
s chr3           45165812 1762 + 160039680 CATATCACCTAAAGAAATAGAAGCAG------------TTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAA-TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaa----gatcaggaattt------------------------------------------------------------------------------------------------------------------------------aaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttcaactat-tggaacgagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgctaattgatccatacttatctc----cttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgaggaaaagccttgaagatatgggcacagggaaaaaattcctgaacagaagagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatct
s HiC_scaffold_1 55056237 1630 + 233722169 CATATCGcttaccaaaaccaaaccaagaagACTTAGTCTTCTAACTAAACTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAAC--TTTAATGAAACTAAAAGGAAGAGAGGACCCA-CAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaa-------------------------------------caaat-caacaaatcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaacata--atagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTGATTACCA-----CACAGGGAGACTGAGTCGGCACTCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAACTCTAAGGGCACCAGAAT--------------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattct

a score=4282
s chr3           45174032 452 + 160039680 GGAATAAAATTCCATGTGTGCAAGGAATGTGGGAAAACTTTTACTGATCACACTTCCCTTCAATACTATGGAAGCATTCACACTGGAGAGAAAATCCTGTGGTGTAAACTCTACTATAAAGCCTTCCCCACTCACAGCTTTCTTCAACATTATGAAAAATTGATA-ATGAGGGAAAACCTTTACATAGAACAAATCCTTCCCATATGACAAAATGATTCACATAGGTTAGA---CACATGTCTGTAAAGATGATGGGACAGTCTGTTTATCATGACTCT--CCCTGATGTCATGAGAGGTTTTAATTTGGAGAAAAAAAAAACACACTGTATTGATAAGCAGTATGGGAAAGCTAAGCAGTATGGGAAAGCTCTGCCCAAGATAATTACTTCAGCATCATGAAAAAAATTCATAATGGAGAAAAA-TTTATATGTGTAAGAAATGTGGAAAAAACTTCA
s HiC_scaffold_1 47569502 379 + 233722169 GGAAAGAAAGCCCATGAATGCAAAGAGTGTGGCAAATCCTTTAGTTATAACTCTCTCCTCCTTCAACATAAAACTATCCATACTGGAGAGA------------------------------------------------------GACCTTATGTATG--TGATGTGTGTGGGAAAACTTTCAGAAACAATTCAGGCCTCAAAGTCCATCGGAGGCTTCACACCGGGGAAAAACCATACCCGTGTGATGTGTGTGGGAAAGCCTATATCTCACG-CTCTAGCCTTAAAAATCACAAAGGTATCCATCTAGGGGAAAA------GCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTAC-----AGCTCTGCC-----------CTTGAACAACAT-AAAAGGATTCATACCAGGGAGAAACCTTTTGGGTGTGACGAGTGTGGAAAAGCCTTCA

a score=40247
s chr3           45690211 701 + 160039680 ttcttttcttttcttttcttttTTTA-AAGGCACATTTATTCAGCATCATGATCAGACTATTACATTTAGCAATCAACAGCATGGGTGAAAAAAG--------GTCTACAGTAAAACCTTTTGTTGGAATGCTTTACACTTTCTTCAGAAC-AGAAACTAAAATAACCTGTTATACAATTAGTCACAAATACAGTCCTGGAGTTTTT-GCCCACACACATAAGTATTGTCTAAAACATGTCTGCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTAGTTTCCCTGTCATTTCTCTGGCTCTCCTCTCCTGCTAAGCTTTGTTTCCTG--------------------------CCATAGCTACTGCTGTTGCTGGAACCTCTATAGCCACCTTGGTTCGGTGGTTTAGCAAAGTTCTGGCCTCCATCACCATAAGAGCCAGAGCGCCTGCCTCCAAAGTTTCCTCCCTTCATCGGTCCAAAATTTGAAGACTGATTGTTGAAATTGCCAAAATCATTGTAGCTTCTAGCACCTCCAAAATTGCTTCCGTTATTGCCAAATCCATTATAGccatccccactgccaccatatctgccaccaccaccacagctgccaccaaagccactacgaccactgaagttaccttctcgaccaaaattgtcattgccaccaaaaccacctccaggaccaccaccaAAGATCCTGG
s HiC_scaffold_1 23395563 718 + 233722169 ttgtttgcattatttatttatttttacaaaacacACTTATTCAGCATCATGATGAGACTATTAAACTTAGCAATCAACAGCGTGGgtgcaaaaaaaattaagagtctACATTAAAACCCTTTGTTGGAATGCTTTATACTTTTTATAGTGCTCTAAACTAAAATAATCTCTCATACAATTAGCCACAAATAAAGTTCTCAAGTTTTTTGCCCACACACATGAGTATT-TATGAAACATGTCTTCTTTGTAGCAGTGAGGCCCTGCCAGCACCGTGCTTGGCTGAGTTCACAAATCTGTTGAAACCTGCAGATTCCCTGTCACTTCTCTGGCTCTCCTCTCCTGGTAAGCTTTGCCTCCTGGCAATATTTAAAACCTTCTCCCACTGCCatagctactgctgctgctggcaCTACCACAGC-ACCTGAATTTCATGGCTTGGTAGAGTATTGGACTCTACCACCATAGAGCCTAGAGCTTCTGCTTCCAGACTTTCCTCCCTTCACGGGTCCAAAATTTGAAGACTGATTGTTATAACTGCCAAAATCATTGTAGCTTCCACCACCTCCATAATTGCTTCCACCATTACCAAATCCACTGTAGCCATCTCCACTGCTGCCATGT------------------TGGCCTCCAAAATCATCTTGATCACTTAAGTTTCCTCTGCAACCAAAACTGTCATTGCCACCAAAACCACCTCCATGACCACCACCAAAATTTCCAG

a score=32251
s chr3           45690233 680 + 160039680 TTTAAAGGCACATTTATTCAGCATCATGATCAGACTATTACATTTAGCAATCAACAGCATGGGTG---AAAAAAGGTCTACAGTAAAACCTTTTGTTGGAATGCTTTACACTTTCTTCAGAACAGAAACTAAAATAACCTGTTATACAATTAGTCACAAATACAGTCCTGGAGTTTTTGCCCACACACATAAGTATTGTCTAAAACATGTCTGCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTAGTTTCCCTGTCATTTCTCTGGCTCTCCTCTCCTGCTAAGCTTTGTTTCC--------------------------------TGCCATAGCTACTGCTGTTGCTGGAACCTCTATAGCCACCTTGGTTCGGTGGTTTAGCAAAGTTCTGGCCTCCATCACCATAAGAGCCAGAGCGCCTGCCTCCAAAGTTTCCTCCCTTCATCGGTCCAAAATTTGAAGACTGATTGTTGAAATTGCCAAAATCATTGTAGCTTCTAGCACCTCCAAAATTGCTTCCGTTATTGCCAAATCCATTATAGccatccccactgccaccatatctgccaccaccaccacagctgccaccaaagccactacgaccactgaagttaccttctcgaccaaaattgtcattgccaccaaaaccacctccaggaccaccaccaAAGATCCTGGC
s HiC_scaffold_1 21154760 672 + 233722169 tttaaaaagaagtttatttagtgCCGTGATGACACTAATACATTTAGCAATCAACAACATGGGTACAAAAAAAGAGTCTGCATGGAAACCCTTTGCTGGAATGCTTTACACTTTCCACagagaagaaactaaaataacCTGTTCTGCAGTTAGTCACA-------TCCTGAGTGTCCTGTCCATACACATGAGCCTCATCTACAACATGTCTTCTT---AGCAGTGAGGCCCTgccaccactgtgcctggccaaGCTCAGCTGTCTGTTGTAAGCTGTGGCTTCTCTGTCACTTGTCTGGCTCTGCTGCTTTGCTGAACTTTTTTTCCCAGCAGGACTTAAaagcttctgcctctgcctctgccataGCTTCCATTACTGCTGGAGCCACGGTTGCCACCTTGATTTCGTGGCTTGGCAAAGTATTGGTCTCCACCCCCATATAGCCCAGAGCTTCTGCCTCCAGACTTTCCTCCTTTCATGGGCCCATAATGTAAACACTGATTATGGTAATTGCCAAAATCAATGTAGCTTCCGCCCACTTGAAAATTGCTTCC---ATTACCAATTTCAGTGTACTGATTCCCA------------------------------GTGCCACCAAAGCCACGTGGAACATTGAAGTTTCCTCCTCGACCACAATTGCCATAGCCACCAAAACCACCTCGACGACCACCACCAAAATTTCCAGC

a score=7268
s chr3            46289829 138 + 160039680 CACTCTGCTCCTTGGGGCATTGCAGGGGTGGCTGCTGTGTCCCCTGTGCATCCATAGGAGACAGAGAGGAGACAGGCTCTTTCTAAGCTCAGTGTTCTGTCCCATAAACACCTTAATAATTAACAGGCCAACATTTCC
s HiC_scaffold_1 194511544 138 + 233722169 CACACTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=38429
s chr3           47084530 1267 + 160039680 GGTGCAGCAAACTTTTTTGATGGTATTTAAGAGAGTAGGGAGAGGTCCCTAGGCCGTTTTCTGTTCTTATGGGGGTCTGGGATGAAAAATTTGTGAGGGAGATGTTC----AGTGTTG-GGGGCCAAGTTGGGAAAGTGACTCCTCAGCAACTGAGGACTTCTCTCTTGCTCTCAGTGTCCTAATTAGGGTGAGTGGTCCAGTTTTTCATACTCCTTGAAGGTAA-GCAGTCCATGAAGTCCACCACCCTGTTTCTATAGCTGTATTTATTGTCATTCCCACTAAATGAGCTTTACAAAATTGTCATTGAGAGCAATGCCAGGCTCAGCATCAAAGA-------GTGGGAGCTGCTGTTGAATCCGCA--GGAGACAACCTGGTCCTCAGTGTAGCCCAAGATACCCTTCAGTAGGCCCTCAGATGCTTGCTTCTCTACCTTCTTGATGTCATCACACTTGATAGGTTTCTCCAAGCGGCATGTCAGATCCACAATGGATACATTGGGAATAGGAACACAGAAGGCCATGCCTGAAAGCTTTCAACTCATCTCTGTGATGACCTTGCTCACAGCCTTGGCAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACAGCCATCATGTCACAGCTTTCCAGAGGGGCCATCCACAGTCTTCTGAGTGGCAGTGATGGCATGGATAGTGGTCATGAGCTCTTCCACGATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGTGGCTAAGCATCTGGTGGTACAGGATGCGTTACTGACAATCTTGAATAACTTGTCATATTTCTTGTGGTTCATACCCATCAAAAACAGTAGATATAGGCAGAATGGGTGGAGATGATTACCCTTTTAGTCCCACCCTTCAAGTGGGCCCTGGCCTTCTCCATGGTGATGAAGACACCAGCATACTCCACGACATACTCAGCACCGGCCTCATCCCATTTGATGTTAGCAGGATCTCGCTCCTGGAAGATGGTGGTGGGCTTCCCATTGATGACAAGCTTCCCATTCTCGGCCTTGACTGTGCCATTGAATTTGTAATGGGTGGAGTCATACTGGATTATGTAGACCATGTAGTTGAGGTTAATGAAGGGGTCATTGATGGCAACATTCTCCACTTTGCCAAGTATAGAGCAGAAGGCAGCCCTGGTAGCCAGGTGCCAAATACAGCCAAATCCATTTACTCTGACCTTCACCATTTTGTCTGCTGGATGATGCTGGCACTGCATATGAAGATGTAGCTATCTCTGGAACAGGGAGGA
s HiC_scaffold_1 97936687 1207 + 233722169 GGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA-------------TCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAA-GACACTTCCTCAGCTTAAAGCccctctctt----ttcatttcttgctcAGGCTG-GTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCAT-ACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCC-AGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGAT---CTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAG-GGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAG-TTCACCCATTTTGATGCTGATA-AATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCC------TGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=28045
s chr3           47084857 965 + 160039680 AAGAGTGGGAGCTGCTGTTGAATCCGCAGGAGACAACCTGGTCCTCAGTGTAG--------CCCAAGATACCCTTCAGTAGGCCCTCAGATGCTTGCTTCTCTACCTTCTTGATGTCATCACACTTGATAGGTTTCTCCAAGCGG--------CATGTCAGATCCACAATGGATACATTGGGAATAGGAACACAGAAGGCCA-TGCCTGAAAGCTTTCAACTCATCTCTGTGATGACCTTGCTCACAGCCTTGGCAGCAC----CAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACAGCCATCATGTCACAGCTTTC-CAGAGGGGCCATCCACAGTCTTCTGAGTGGCAGTGATGGCATGGATAGTGGTCATGAGCTCTTCCACGATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGTGGCTAAGCATCTGGTGGTACAGGATGCGTTACTGACAATCTTGAATAACTTGTCATATTTCTTGTGGTTCATACCCATCAAAAACAGTAGATATAGGCAGAATGGGTGGAGATGATTACCCTTTTAGTCCCACCCTTCAAGTGGGCCCTGGCCTTCTCCATGGTGATGAAGACACCAGCATACTCCACGACATACTCAGCACCGGCCTCATCCCATTTGATGTTAGCAGGATCTCGCTCCTGGAAGATGGTGGTGGGCTTCCCATTGATGACAAGCTTCCCATTCTCGGCCTTGACTGTGCCATTGAATTTGTAATGGGTGGAGTCATACTGGATTATGTAGACCATGTAGTTGAGGTTAATGAAGGGGTCATTGATGGCAACATTCTCCACTTTGCCAAGTATAGAGCAGAAGGCAGCCCTGGTAGCCAGGTGCCAAATACAGCCAAATCCATTTACTCTGACCTTCACCATTTTGTCTGCTGGATGATGC-------TGGCACTGCATATGAAGATGTAGCTATCTCTGGAACAGGGAGGAGCAGAAAGCCCAGCAGACACATCTT
s HiC_scaffold_1  9527489 919 + 233722169 AAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAGGATTCCTTT-GAGCCCTGGTTC---ACCATCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTAGG-AATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGG--TGGGTTAGCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTCTCAGGAGAAGGGGC---------------------TCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAGT-GTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC------TGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGT---CTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAGTTGAGGCAGG-------GACACATCTT

a score=5799
s chr3            47200628 142 + 160039680 TGTCCCTTGTAGTATTTCAGATGTGGGTGCTGTGTCACATGTGTAGGAGTTGGTGGCAGAGATGAGAGAAGCTATATTTATGGTCAGTGTCCTGATCCTGACCTATGAATATTTGAACGGTTAATAACCTAACATTCCCTGT
s HiC_scaffold_1 194511549 136 + 233722169 TGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTG------TTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCCAGT

a score=11668
s chr3           47230484 516 + 160039680 tttttttttttttttAATGGTGAAAAAAAGTATATATTTAGAATTAGCCATCTGGATTCAGTTTAGATGAT------------GGCAATATCTAGGGCATCATAATAAGGAGCCAATCGAACATACACCTTCATCTCTCCTTCGGGCCTTTCAGGGTATTGACTTTGGCCACATCGATGTCATAGAGTTTCTTGACAGCCTGCTTGATCTGATGCTTGCTGGCCTTGACATCCACAATGAACACAAGAGTGTTGTTGTCCTCTATTTTCTTCATGGCTGACTCAGTGGTCAGTTGGAATTTGATGATAGCATAGTGGTCAAGCTTGTTTCTCCTGGGCGCACTCTTCCAAATATATTTTTCCTGCTTCCAGAGCTGCAGGGTCTTGGGACACCGGAAGGTTGGTGACATTCGAATCTTCTTCTTTTTGTGGCTGTGGACACCTTTCAGCACCCCCTTCTTAGCTTTCAAGGCCTTCGCTTTGGCTTCGGCTTTGGGAGGGGCAGGAGCATACTTCTTCACTTTCGGTG
s HiC_scaffold_1 52410666 471 + 233722169 TTTCTACTCTATTTTTACagtgaaaaa---tgtgtatttaggATTAGTCAGCTGTACCCAGTT-AGATGATTCCAATTTTGGTGGTAGTAGCCAAAGCAGCCAAATCAGGAGCCAGCTGTATACACAGCTTCTTTTTATCCTGA------CCGGGGTGTTGACT--GGCCACACC-ACATCACAGAGCTTCTTTGTCCCCTGTTTGTTCCAGTGCTTGTTGGCCTTGACACCTGCAGTTAACACAAACG---TGTGGTCCTCTGCCTCTTGCATAGTGGA--------------GCGACCTGCTGCTGGCAGA---GTCAGGCAGATTTCACCCAAAGG---TCTTCTCAGGACATTTGGAC-ACCTCCACAGTTGCAGGGTC-TGGGGTTCCAGAAAGAAGATGGCTTGGCGATC--------TGTGTGGGTGTGG----CTTTCAGCGTTTCCTTCTTGTCCTGTGAAACTTTT-------CTCTGGTTTCAGGAGAAGCAAGAacttcctcctttgtttttagTG

a score=13879
s chr3            47230490 512 + 160039680 tttttttttAATGGTGAAAAAAAGTATATATTTAGAATTAGCCATCTGGATTCAGTTTAGATGAT-----------GGCAATATCTAGGGCATCATAATAAGGAGCCAATCGAACATACACCTTCATCTCTCCTTCGGGCCTTTCAGGGTATTGACTTTGGCCACATCGATGTCATAGAGTTTCTTGACAGCCTGCTTGATCTGATGCTTGCTGGCCTTGACATCCACAATGAACACAAGAGTGTTGTTGTCCTCTATTTTCTTCATGGCTGACTCAGTGGTCAGTTGGAATTTGATGATAGCATAGTGGTCAAGCTTGTTTCTCCTGGGCGCACTCTTCCAAATATATTTTTCCTGCTTCCAGAGCTGCAGGGTCTTGGGACACCGGAAGGTTGGTGACATTCGAATCTTCTTCTTTTTGTGGCTGTGGACACCTTTCAG-CACCCCCTTCTTAGCTTTCAAGGCCTTCGCTTTGGCTTCGGCTTTGGGAGGGGCAGGAGCATACTT--------CTTCACTTTCGGTGAA
s HiC_scaffold_1 226839764 476 + 233722169 TTTTTTTCTTCCggtgaaaaa-----tatatttagaactggCCAGCTGGCCTCC-TTTAGACAATCCCAGTTCTGTGGGAACATCCGAAGCATCACAATCAGTAGC-----AGACATGTGCCTGCTTCTCTCCGTCAGCCCTGCCGGGGCATCGACCTTGGCGACAGCAGGGTCTCAGAGCT-CGTCACAGCCTGTGAGATCTG------GCTGTCC------------------ACAGGTGTGGTGCTGCCTGCTGTGGTCTTCATGGCCAGCTCAGTGGCTGG--GGGACTTGACGGTGGCAGCACGGTC----CTCTGTTCTCTGGGC---CTCTTCCAGGGGTGTGCGGTCTGTCTCCACAGCCGCAGTGTCCTGGGCTAGCGGAAGGCCGGGGACAGGTGA----------TCTTGTCTTTGTGGATGCCTTTTGGTCATCGCCACCCTGGCTT-CAGAGCCTTTGCCTGGGCCTTGGCTTTGGGAGAGGCGGGAGCTCGCTTTGCTTTTGCTGCCATCTTGGTGAA

a score=12602
s chr3            47230517 382 + 160039680 ATATTTAGAATTAGCCATCTGGATTCAGTTTAGATGAT-----------GGCAATATCTAGGGCATCATAATAAGGAGCCAATCGAACATACACCTTCATCTCTCCTTCGGGCCTTTCAGGGTATTGACTTTGGCCACATCGATGTCATAGAGTTTCTTGACAGCCTGCTTGATCTGATGCTTGCTGGCCTTGACATCCACAATGAACACAAGAGTGTTGTTGTCCTCTATTTTCTTCATGGCTGACTCAGTGGTCAGTTGGAATTTGATGATAGCATAGT-GGTCAAGCTTGTTTCTCCTGGGCGCACTCTTCCAAATATATTTTTCCTGCTTCCAGAGCTGCAGGGTCTTGGGACACCGGAAGGTTGGTGACATTCGAATCTTCTTCTTTTT
s HiC_scaffold_1 132134870 382 + 233722169 ACATTTAAAACTAGATAGGTGGTCTTAGTTTAGATGGTTTACTTTTGTTGGTGACATCCAAAGCTTCATAGTCAGGAGCTAATCAAGTACATGCCTGCTTTTCTTCACT---------AAGGTGCTGATTTTGACCATGTCCATGTCACACAACTTCCTAATAATGAGTTTAGCTTGGCGCATATTGGCCTTGACTTTCATAGCCAACACAAGCTGCTTGTTACCTTCTGTCTTCTGCATGTCCTGTTCAGCAATCAGAGGGAACTTGATG---GCACAGTGGGTCAGGCTTATTTCTGCAGAGTGTGCTTTTCAGAGGAAATTTGGTCTATCTTGGGAGCTGTAGTGTCTTGGAACACCAGAAGGTAGATGTGATAggactttctctctgtct

a score=22411
s chr3            47459490 828 + 160039680 TGTTTTCTGTGTCCTACTTTTCCAAGCCAGCATCTTCTGTTTTAAGACTTGTAAGCCTTTATTTCCTAATGTGTTTCTCTGATTCATCTGACTC------------------AGCTGG------TAGCTTTGAGAGGAAAGTCGAAGAAACGAAACTGCCTATCTTTACCTAATTTTACGACCTATCTT-TGGCTTCAGCCTTAGCTGGGA----------CAGCAGGAGCAGAAGTGGTGACAGTAGCCACAGA-AGATCAGCCCAAATACAGTTGGAACACTGAAGAAGGCCTTGACTTTTTCAACAAGTGGGAAGGTTTTCTCGGG-----TCTCCACAAAGAATGCCGGGGCCTTCTTGGATCCACTGATGATAGAGTGTGGCACCGAGGGAAGAGTCAGGCAAACAATCAGCTGATAAATGCTTGCAACAAATAGGACACCCTCTATGAAGTGAGAGTGCAGAGTCTGCCCCGTGTTGTCAAGCACTGCTGGGTTGTAAGGACTGCCATTGCCAAACACTGG----CTAATCAGCCCAAAGAAGAAAGGACAAGGG------ATATTCATCAGTGTGGCTTTACTGGCTTCCAGTTTGTCTCCAGATTGTATCACATGCATATCACTCATAATTT-----GT-TTCCTGGAGATTATAACGGTGAGATTCGAAGGTTAGAA-AGTAAGGTCTTCTCAGGCCTTAGACCAGTGCTCTGGGCTAGCACAGTGACATCATACCAGGTAATGGTACCAGTGCTAGTGGTAGTTGGCTCCTTATTGGCCAGCAGTGTTTTTCTCACCTCTGTGAAGTCCCCTCCTTGGTGAACTCAAAGCTCACATT-CCTTCCACAGGAGGCACCAGTTTCCC--ATACTGGGTTGCT
s HiC_scaffold_1 102666503 861 + 233722169 Tgtctgctattttctttttcttc---------ttttttttctgaagaaaattatgcctttatttcttttcttctttctttctttttttttttttttttttgtcaagcaTACAGGCTGAATAGTTTGGTTTTGGGTGAACATTCAGAGAGACCAAATCCCATATC---AGCTGGCTCCTCCATTTCTCCCCTAGCTTCAGCCTTGGCTGGGGTGGCTGCAGCCAGCAGGA-CAGCGGTGGTGGCAGTAGTGACAGGGAGAGCAGCCACCATGCTGATGGATCAGTCAAGAAGGCCTTGACATTTTCAGCAAGTGGGCAGGT------GGGATCCATCTCCACAGACAAAGCTAGGACCTGCTGGTACCCACTGATGATAAAATGGAGCACCGATGCAACAGTAGGGTAACCAATCTGC----AAACACTGGTAACATTGCAGACTCCTGCCAGAAAGCAAGAATG---AGATTTCCTCTGAATGGCAAGCACTTCAGGGTTGCCGATGCTGCCACTGTTGAACACTTGATAACTGATCAGCCTAGAGGAGAATGAGGAGATGTTCAATATATTCAGGAGGGCAGCCTTGCTGGCTCCCATTTTGTCTCTAGTCTTAATCAGCGGTACATCACTCAGTATTTCAATGGTGCCCCTCAAGATTTTAGTGGTGATGCCTAAAACCTGAAAGAAGGAGGTCTTCTCAGGACCCAGGCCAGTTTTTTGGGCTAGCGTAATGACTTCACATGGTACAGTGGCACCAGCATGGGCCACAGCTGGCACCTCGTTGGCCAGCAGCATATCCCTCATCTCAATCAGGT--CCTTCTTGGGGAGCATGAAGCCCACATTCCCCTGGATATGAGGCAACAATTTCTCTAGAGCTGGGTTGTT

a score=8144
s chr3           47460241 326 + 160039680 TGTGAAGTCCCCTCCTTGGTGAACTCAAAGCTCACATTCCTTCCACA--GGAGGCACCAGTTTCCCATACTGGGTTGCTGGCTCAACAAGCATCCTCATTAGAGTCACATCCTCTTTAAACACTTCATGGCAACCCCTGTTGCATTGCCTTGACGCCTAGGTAAGACAGGGTGAACTGCAAGTCCAACCGCTTCCTTGAGATCATATCACTTTAGGATGATTATTCCAAGTGCTTCCTTATGGGAACTGAAAATGTGGGCTCTAAGCAGACCCTGCAGATCGGGATGTCCTTGAATGTCTCTGAGAAGGAATGCCATCGTGCTGATGG
s HiC_scaffold_1 98425027 301 + 233722169 TGTAAAAGCCATTGCTTTG-GAACTTATAACTTATGTGCCCCTCATAATGCTCGCATCAAAA-CTCATAATGAGCC-TTCTCTTTATAGGAGTCCTCATGAGAATGATGTCCTT----GACCCTATATGGTAATCCCTGACACACTTTCATGATGCTCAGAGAAGACAGG-TGATGTGAAAGCTCATTTACTTCCTTAAAATCATCCAACTTTTGGATGATTATCCAAAATGCTTCATTGTGGGAGCTGACAGCATGGGCTCCAAGCAGATTCT-------------------CATATTCTTCCAAGGGGATGCTGTGGTGCTAATGG

a score=5698
s chr3            47699717 125 + 160039680 TAAAAGGTGGAGATGCTGGCAACAGGACAGACCAGATAAACAGGCTTATTAGATGGATGAACTAAGGTGTCACCCATGGTATTTTTGTAATCTGATCAGTTAATAAACAGTCATAGCTTGGCAAA
s HiC_scaffold_1 138719856 125 + 233722169 TGGAAGATAGAAATGCTGGAAATAGGGAAGACCAGATCAACAAGATGATTAGAAGAATAAATTGAAGTATCTACCATGGTGTTTTAACTATTCAATCAGTTAATAAAAAGTGTCTGCTTcccaaa

a score=19679
s chr3           48025984 776 + 160039680 AGAAGGAGGCTGGTGCC--CTGGATGCCT--TTAGTTTTCGGCCCCCTCTGCTGCATCACATTCTTCTCCTGCACTGTTCGATGTCCATTAATGTTAAGTTGTCTCTAAGCAACTGCATGATGAGGGTGCTGTCTTTGTAGGAGTCTTCGTTCAGTGTATCAAGCTCTGCGATGGCCTCGTCAAAAGCCATTTTAGCCAGTGTGCAGGCAAGCTCTGGATTATT-AGGATCTCATAGTAAAATACAGAAAAGTTAAGAGCCAACACCAGGTGGATTGGATGCGAAGGCTGCATCTCTTTCTTGCTTATATCAAAAGCCTTTTGGTAGGCTCCTTGGGAATTTTTTATTGTTTCTTTTTGATCGTCACCACAAGCTACTTCAGCAAGATATTGGAAATAATCTCCCTTTATTTTCAGATAGAAGACCTTATTCTCGGGATTAGTTGCACTGGCTATTAAATACTTATCCAACAATTCCAGGCCCATGGTGCAGATGGACCTCAGCTCCGACTCCACTTTCTCCCAATAGTCCTTGATCAGCTGCAACTTCTTGTCGGAGGTGTCGGTCTTCTGCTCAATGTTCAAGATGACCCTCCAGGAGGACCTACCCCCCCCCCACACACCCCGTCCACGTTCTTGTAGGCCACCGAAAGCAGGTTATGCAACTCTTTGGACAGCTCCGTGCCCTGCTCAGTCATGGCTTTCATGTTGGTGGCCATGTCGTCTTAGTGCTCGGCATGCTC-CCCAGCTTGGCCTTCTGGATCAGCTCGGTCTTCTCCATG
s HiC_scaffold_1 67869345 757 + 233722169 AGAACGAGGCAGGTGAAAGTTGAAAGGCCAGTTAatcttcctctcctcctgcttcagc---ttcatcTTCTTGGGAAGCTGATGTCCAC-AATGTCTAGTTGTCTCTCAGTAATTGTGTTATTAGTGTACAGTCCTTGTATGACTCCTCACTAAATGTATCAAGCTCAACAATGGCTTCATCAAAAGCTACATTTGCTAGAGAATGGGTTTTAACTGGAGAGTTCAGAATCTCATAATAAAACATAGAGTAGTTGAGGGTCAGACTCAATCTGATAGGATGCATTGGTTGCATTTCCTTTATCCTGATTTCAAAAA-CTTTTGGTATCTTTGTTGTGACTGCCCCACAATCCCTTTCTGGTCATCACCAGCAGCAACCCCAG-ACAATAACAGTAGTAGTCTCCTTTcgttttcaaataaaatgc--tgCTCTCTGCTTGTGAAGCACTGGGGATCAAGAACTTTTCCAAAAGAGATAGTACATTGTTGCAGGTAAGCCTTAGctcagcctcagttttctctctgtgttcttGAGCCATCTGCTGCCCTGTCTCAGCACCTTCCATCTTTTGCTCAGTGCTTGAGACAACCTTCCAAGATGAACTATAGGCTCCTGTAACAT----------TTTTTGAAGAACAC--AGAGAAGATTCCTCTCCTCATTAGATAATCCAGTGCCTTGCTCAGATACAGACTTCACATGGGCTGCCATGGCATTATA-----TGGCCTGCTTGGCCAGTTTGGCTATGTGCACCAGCTCATTTTTATCCATG

a score=4038
s chr3            49491399 77 + 160039680 GTTTGTTAGAGTAATTGGGGTGACAGCAGTGTACCAACCTCAGAAGCTACTGAGGT-GCCCATTCTGTCACAGTACAG
s HiC_scaffold_1 100315642 78 + 233722169 GTTTGCTAAAGTAATTGTGGTGATAGGACTGTATTAGCCTCAGAAGCTACTGGGGTAGTTCGTTCTATCCtcatatag

a score=5626
s chr3           49491399 619 + 160039680 GTTTGTTAGAGTAATTGGGGTGACAGCAGTGTACCAACCTCAGAAGCTACTGAGGT-GCCCATTCTGTCACAGTACAGCCttttttttttttttttttttttGGCTGCTTTATAAGAGACTTAACTTTTTGAtttgtgtgataaggttttgctgagtagccttggctatcctggaactcatgttgtagaccaggctggcttggaaatcagagatccgtctgcttctgctgggattaaggttgtgcgccacggccac----cacccagctTTGGGGGTTGAGGTTGAGGA----------GACCAAGCCTCACTTCTCCTGGATTTGTCTAGGGACCTGATATTCAACCAGGGCCACCATCGAATTTAAGACAGTCCTG----ACTTAAAGGCATGGAGGAGATGTGTAAGAAAGCTCATGCTTCTATCCGAGAGAATCCAGTCTATGAGAAGAAGCCCAAGAGAGAAGTGAAGAAGAAGAGGTGGAATCGTCCCAATATATCTCTTGCCCAGAAGAAAGAC----TTGCTCAAAAGAAGGCAAG-TTCCTCAGAGCTCAGGAAAGGGCTGCTGAAAGCTAAAGCAGTTTTCTATAAAGGTTATTTTTTTTCATAAAGA-CAATAAACATATT--GATAAAGATAAA
s HiC_scaffold_1 99933474 503 + 233722169 GTTTGCTAAAGTAATTGTGGTGATAGGACTGTATTAGCCTCAGAAGCTACTGGGGTAGTTCGTTCTATCCTCATATAG----------------------------------TACAAGAATCAatgactgcattt---taaaatggCT-----------------ATATctcagtaattaaaaaataatatatgcacACTTAGCCATTGTACtatcatttttttatgtttacatt----ttggACCCTGTGATAATATGACAAAGTGCTTGGGAAAGTTAGCTTAAGAAAATGTATTAGAACTGAGATTAACCTCC-----------------ATCTGATAGTCTGTCATTTTCAGC--TGAAGTTAATA---TTCTGTATCCTTTTTAgctatgg-------ttttaaaaaaatatattcttgt----------------tTTAT---------------------------------AGGTGGAACCGTCCCAAAATGTCACTTGCCCAGAAGAAAGATCGGGTAGCTCAAAAGAAAGCAAGCTTCCTCAGAGCTCAGGAACGGGCTGCGGAGAGTTAAAAA---TTTCTATCAAGA----CTTTTCAGATAAAGACCAATAAATTTATTCAGATAAAGACCAA

a score=7259
s chr3           49491772 91 + 160039680 ATGGAGGAGATGTGTAAGAAAGCTCATGCTTCTATCCGAGAGAATCCAGTCTATGAGAAGAAGCCCAAGAGAGAAGTGAAGAAGAAGAGGT
s HiC_scaffold_1 99933249 91 + 233722169 ATGGAGGAGATGTATAAGAAAGCTCATGCTGCTATACGAGAGAATCCAGTCTATAAAAAGAAGCCGAAGAGAGAAGTTAAAAAGAAGAGGT

a score=24776
s chr3            49530733 614 + 160039680 TCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGT--------------------------TTGCTAGTCTCTTGACCTAGAACCCCTCACAAAA-CCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGCCCAGG---------GCATTCATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTG-AGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCAT----------------------------------------------------------------------------------------------AGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAAGTGGAAA
s HiC_scaffold_1 176819650 727 + 233722169 TCTTCATATAAACGGCCTGAAGTGAACTGTGAAACCAGTGAGGCTTCTCCCTGGTAAGTAGGGATTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCACCAAGTATCTGAAGGGTGACTCTTGAAAGAAGCAGTGTGTGTCATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTGCTTAAGCCAAATG--AGGGCTAGACACAGGATTGAGACCCCAAAAG-AGTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAGA--CTCTAGTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCT------------GAGCTCGTGATCTAACTAATGAATACCTGAGTTCCC-CTGCCACATGGAGATAATCCTTATTGAAAAAGGAACAAATAGTTCCTAGGTCATAGGAGGAGGTTGCATCAAACACAAGAGTATCCCAGGGCAGGAGATAGTGCTCAGAgccataagtacctgcttggtaagcacaaggtcctgagtttgattcctggtaccaaaaagaaaaagatatcccagaaaaaactgaagaaacaaaaacttacGATCTGAgagtaaatgaaatataaaataaatgcaaataaagtaaaaa

a score=18151
s chr3           49603549 288 + 160039680 caggatcattCCCCCCTTTGAAGGAGGGACTTTTAAACTTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCATCTAAAGTACGTTTCATAACCAAAATTTATCATCCTAATGTAGACAAGTATGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCAATCCAGGCTTTGTTAAGTGCTCCTACACCAGATGATCCATTAGCAAATGATGTATCCTAGCAAT---GGAAGAccaatgaagcccaagcctc
s HiC_scaffold_1 67174164 285 + 233722169 CAGGAT--TCCCCCTCTTTGAAGGAGGGACTTTTAAACTTGAACTATTTCTGCCAGAA---TACCGAATGGCAGCACCTAAAGTACATTTCATGACCCAAATTTATCATCCTAATGTAAAAAAGTTGAGCAGAATatgtttagatattttaaaagataaatggtCACAAGCACTGCAGATCCTCACAGTTCTGCTATGGATCCAAGCTTTGTTAAGTGCATCTAACCCAGATGACCCATTAGCAAATCAT-TAATAGAACAGTCCATGAAGACTCATGAAGCCCAAGCCCC

a score=17424
s chr3            49603558 269 + 160039680 tCCCCCCTTTGAAGGAGGGACTTTTAAACTTG-AACTATTCCTTCCAGAAGAATACCCAATGGCAGCATCTAAAGTACGTTTCATAACCAAAATTTATCATCCTAATGTAGACAAGTATGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCAATCCAGGCTTTGTTAAGTGCTCCTACACCAGATGATCCATTAGCAAATGATGTATCCTAGCAATGGAAGAccaatgaag
s HiC_scaffold_1 120882050 268 + 233722169 TTCCCCCCTTGAAGGAGAGACTTT-AACCTTGTAACTATTT-TGGCAGAAGAATACCCAATGGCTGCACCTAAAGTACGTTTCATGAACAGAATTTGTCATCCTAATGAAAGCAAGTTGGGAAGAATATGTTCagatattttgaaagataaatggTTGCCAGCACTGCAGATCCTCACAGTTCTGCTATTGATCCAGGCTTTGGTAAGTGCTCCTAATCCTGATGACCCATTAGCACACGATGCAGCAGAACAGTGGAAGACAAATGAAG

a score=17495
s chr3           49780420 515 + 160039680 TTTTCTATGGGGCTGTCACAGGGATGCAGACAGCTTTG-GGAGGATGAACTGGAACTAAAGCCCAAGTCTTAGCTTGAGCTGTGGCCT----------CTGGC-TTGCTTTGAAACTTGGACATT-GGTTGGCAGAGCCAATGACCCTTGGCGGTGTAGCTTCAAGTCTG------CTTCTCAAGTTT--------TGGTGAAAGCGAGACAGCAGGGTTTGCAGCCAGGACCCTTTGACATCTTGGGCTTGACTGGCTTAGGCTACACAAGGGTCTTCATGGCTTCTGTGCGAGCTCTCATTGCCTTTGCATTGTTGGCCTGCATCTTCTTTAGGCCTTTCTTGTTAGGTTTCTTGCCAAAGAGCAAGCTCCTCAGGAACGTGGGGTAAAC--------ACCCTTAGGAGATTTGTACCTTTGTGACCAGGTCTTCTTGATGCCAATTCTGTACCATTTACAGCACTGGTTGTATAGGTTGTGTTTTTAGGTGTTGACCATGTCTGCATGGTAAGCCGTGACTCTCACTCTGCCTGGAACAGGAAGaga
s HiC_scaffold_1   788093 549 + 233722169 TTTACTGGGGAGCCTTCACAGGGGCCTGGGCAACTTTTTGGAGCCTGAGCTGGAACAGAAGTTGGAGCAGCAACCTGAGCCTGGGCCTTGGTTGGAGTCTGGCCTTTAACTAAATCCCAGGCATTTGGCTGGCAAAATCTGCGACCCTTGGCAATGCAGATGAAGACATGGATACATTTCCCAAGCTTGGGGTGCGTGATATAGGCAAATTGAATGAGCTTGTGGTTCACACCCATTGGGATCTTGGGCTTGACCTCcctgggctccaggagggtctCAATAGGCTCCGCACGTGCATCCATGGCCTTGGCATTGGGGGCCTGCATTTTCTTGAAGCCCTTCTTGTTGTGCTTCTTGGAAAAATGCATATTCCTCAGGAACTTGGGATTTACGAGATATGACTCTTCAGAGAGTCATATCTTTGCAATCAGGgtttcttgatgctatttctgTGCCATTTTCAGCACTGGCTGTGCGTGGTGTGGTTCTTGGACTTGGCCATGTCTGCACTGTAAAGCACGGCTGTCAAG-tgcctggaaccagaagaaa

a score=8631
s chr3           50369909 374 + 160039680 GCGTGAGTGCATCTCCATCCATGTTGTCCAGGCTGGTGTCCAGATCAGCAATGCCTACTGGAAGCTCTACTGCCTGGTACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAAATGACTCCTTCAACACCTTCTTCAGTGAGACAGGAGATGACAAGCATGTGCGTCAGGCAGTGT------------------------------TCATAGAC--------------------------------------------------------------CTGGAACC------------------CACAGTCATC---------------------------------------------------------------------------------------------------------------------------------------------------------AATGAAGTTCTCACTGACACCTACTGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAGGATGCTGCCAATAACTATGCCCGTGGCCGCTACACCACTGGCAAGGAGGTCATTGACCTTGTCCTGGACAGGATTCATAAGCTGG
s HiC_scaffold_1   789411 630 + 233722169 GCACGAATGCATCTCAGCCCACGTGAGGCTGGCTGGTACACAGAT-GGCAGTGCTTGCTGGA-GCTGTGCTGCTTAGAAC-TGGGATCCAGCCATATGGGTAGATGGCCAGTGGCAAGACCTTTGGGTG-GCACATGACTCCCTCAACACTTTCTTCAGTGAAACTGGAACTGGGAAACATGTGCCCCGGGCAGTGTCTGGAGCCCTCTGTGATCAGTTCATCTCTGTCATAGCCTTGTTCCTGTGTACAGAAAGATCTTACTTCAGAACTGGAAAGCACTGGAGTTTGTGCTGCAGCTGGAATCTAAGGCAGTGAGTGGAATCACTGTCACTCGCTCCAAAGCTCTTTTGCATTCCTTTCCATGTCACTGGATGCAGTTCCCCTAGGGTAAAATCTGGGGCCTGGTGACCCCATGTCCTCGGGTGCCCTGGGGGGTTGGGAACTGGACTGTAAGGGAGGTGGGACCCAAAACTCTGCCCATGGCAGATGAAGTTCAGACAGGCATTTTCACCCTGTTCATCCACCCAGAGCAGCTCATCAAAGGCAAAGAAGATGCTGTCAATAACTGTGCCTGGGGCCCCTCTGCCACTGGAA---AGCTCATCGACCTGGTGCTGGACTGGATTTGGAAGCTGG

a score=21923
s chr3            50370390 379 + 160039680 GGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCTCGTATCCACTTCCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTGAGCCAGCCAACCAGATGGTGAAATATGACCCTTGCCATGGTAAATACATGGCTTGCTGCCTGCTG-TACCGTGGTTATGTGGGTCCCAAA-TAGTCAATGCTGCCATTGCCACCATCAAGACCAAGCACAGCATCCAGTTTATAGATTGGTGCCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACTTGGTGGTGACCTGGCCAATGCCCAG
s HiC_scaffold_1 218334080 365 + 233722169 GAGCCAGGAATGTTGATCTGACGAAATTCCAGACCAAACTGGTTCCCTATCCCCACATCCACTTCCATTTGGCCAAATATGCCT---TCTTCTCTGCTGAGAAAACCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTGAGCCAGTCAACCATATGGTGAAATGTGACCTCCGCCATGG------------TTTCTCCCTGTCGTTATCACGGTGACGTGGTCCCCAAACTTGTTAATGCTGCCACTGCCACCATTGAGACTAAGCATAGCATCTAGTCTGTGGACTGATGTCCCACTGGCTTTAAAGTT-ACCTTAATTACTGGCCTCCTATCATTTTGCCTGGTGGTGACCTGGCCAAGGTACAG

a score=10858
s chr3           50370401 358 + 160039680 GTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCTCGTATCCACTTCCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTGAGCCAGCCAA---------------------------------------------------------------------CCAG---------------------------------ATGGTGAAATATGACCCTTGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGTGGTTATGTGGGTCCCAAATA-GTCAATGCTGCCATTGCCACCATCAAGACCAAGCACAGCATCCAGTTTATAGATTGGTGCCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACTTGGTGGTGACCTGGC
s HiC_scaffold_1 73280967 450 + 233722169 GTAGGTCTGACAGAATTCCACACCAACTCAACTCCCCATCCTGGTATCCACTTCACTCTGGTCTCCTAAATCCCTGTCAT---TACTATGAAAGCCTGCCATGAA-AACTTCCTGTGACAGAgctcacaaatgctagatttgaacCTGACAAATaaggtcggggatttagctcagcagcctaaatacctgcctggcaagtgcaaggtcatgagtttgatccccagtacaaaaaaaaaaaaaaaaaacctgacaaatACAAGATGAAATGTCACCCAGTCCAT-GTAAATACATGAATTTCTGTCTGTT-TCCCATGATCATGTGGTTCCTGCAGAGGTTAATATGGACACTGTCCTCACCAAGACC-AGTGTTCCATTC--TGTGCAGGTGGGTGCCCTACTGACTTCAAGGTTGATGCTAATTGCCAGCTTCCCAC--TGATACCAGGCAGGGACCTGAC

a score=5501
s chr3           50828261 280 + 160039680 ATTTCAGAAGACAACGTCCATATAAAGCATGTGTTAAGTATCCTTTCTCCAGAATGCACAGGAGCAGAGGTGTTTGGAAT-----ATTTGTGTCCATATA---------------------------ATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGAGATGATTTTGTACGATATTTTTGA-------CTTCTTTGTATTTTAACACCTCTTAGCATGCAAGGTCAAGTGTGGAAAGTTCCAATTGCAGCAACCAGTCAGTATTCAA
s HiC_scaffold_1 17081971 304 + 233722169 ATTTCATAATACCAC---CTTATACAG-----GTTGCATATCCCTTATCCAAAATTCTTGAGACCAGAAGTCTTTTGGATTTCTCATTtgtttacatatacataatgaaaAGGAATATTTGCATGAAATGATACATTTTAGAGATAAGACCAAAGTCTAAACGCAAAATCAACTTATGTTTCATATATACCTTATATACACAGTCCAAAGGTAATTTTACCCAGTATTTTGGGGGGTGCCTTTGTTTTGACTGTGACGT-------CAAGAAGGTTCAGGTGTCACATTTTCTACTTGTGCATTCCCGTTGGTACTCAA

a score=5194
s chr3            50828293 271 + 160039680 GTTAAGTATCCTTTCTCCAGAATGCACAGGAGCAGAGGTGTTT--------------------------GGAATATTTGTGTCCATATAATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGA---------------GATGATTTTGTACGATATTTTTGACTTCT----TTGTATTTTAACACCTCTTAG---CATGCAAGGTCAAGTGTGGAAAGTTCCAATTGCAGCAACCAGTCAGTATTCAATAAAACGTTCGTTTTGGTTTTTG
s HiC_scaffold_1 221976085 312 + 233722169 GTTGAATGCCCATTAGCTTACATGTTTGGGACCAGAAGTATTTTGAATGTCTGATTTGTTTTGGATGTGGGAATATTTGTACACATATAATTCAGTATCTTGGGGATGGAGCCCTAATCTAAACAGGAAACCCATTTATGTTTTACATGCACCTTATACACATAACCTGAAAGCAAGCCGGGGAAGGATTCCTCCGTGAGCTGGATCCCACTAGTGCACCCGCATTTTCACATATGCCAAGGTCACATAAGGTCAGGCATGGAATTTTCTGCTTGTGGCATCATGTTGATACTCAAAAA-------GCTTTGGGTTTTg

a score=4710
s chr3            50828294 182 + 160039680 TTAAGTATCCTTTCTCCAGAATGCACAGGAGC-AGAGGTG-------TTTGGAATATTTGTG------------TCCATATAATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGAGATGATTTTGTACGATATTTTTGACTTCTTTGTATTTT
s HiC_scaffold_1 145749454 199 + 233722169 ttaaatatTCCTTATCCAAA---TACTGGAGCCAAAAGTGCTACAAATTTTGAATCTTTTTGGATTTTGCAATATTTGCATAGTGAAATAGTTTCAGGATGGTACCAACACCTAAATATGAGATTCATTTATAGTTTATATACATCTTATATGCATATTCTCAAGGTAACTTTATTCAATAGTTCTACTTCACCTGTGTTTT

a score=6094
s chr3           50828298 352 + 160039680 GTATCCTTTCTCCAGAATGCACAGGAGCAGAGGTG---------------TTTGGAATATTTGTGTCCATATAATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGAGATGATTTTGTACGATATTTTTGACTTCTTTGTATTTTAAC----ACCTCTTAGCATGCAAGGTCAAGTGTGGAAAGTTCCAATTGCAGCAACCAGTCAGTATTCAATAAAACGTTCGTTTTGGTTTTTGTTGTTGTTGTTGGCTTTTTTTTTTTTCAGCATGCATGACTTTAGGATTACAGATCAGGAATGTTCAAGCTATGTAACATAGAAACA
s HiC_scaffold_1 65170168 332 + 233722169 GTATCCCTTCATCAAAACGCTTTTGTTTAGAAGTGCTTCAGATTTTATCTTTTGTGGTATTTGCATATGTATAATGATGTATTCTGTAGATGGGACTCATGTCTAAATATAAAAGTCATGTATGCTTCATATACAACCTGCACACATAGCCTGGGAGTAGTTTCATACAACATTTTAGTGCAC-CTGCATTTTAACTGTGACCTGT---CACAGGAAATCAGATGCAGAATCTTCCATTTGTGGCATTATGTCCGTGGtcaaaa-------catttcagattttgg--------------------------agcactTCAGATTACAGGTTTTTGGATTAGGCATGCTCAG--TATGTAATAGAACAACA

a score=6695
s chr3            50828311 335 + 160039680 AGAATGCACAGGAGCAGAGGTGTTTGGAATATTTG--TGTCC-------ATATAATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGAGATGATTTTGTACGATATTTTTGACTTCTTTGTATTTTAAC-ACCTCTTAGCATGCAAGGTCAAGTGTGGAAAGTTCCAATTGCAGCAACCAGTCAGTATTCAATAAAACGTTCGTTTTGGTTTTTGTTGTTGTTGTTGGCTTTTTTTTTTTTCAGCATGCATGACTTTAGGATTACAGATCAGGAATGTTCAAGCTATGTAACATAGA
s HiC_scaffold_1 107031726 327 + 233722169 aaaatgcttaggACCAAAAGTGTTATGGATTTTAGATTGTTTTGAAAAGACATGTTTAGGTCTCTTGGGGATGAGACCTAGGTCTAAATTTGAAATTCAATTATGTTTCATATATACTTTACACACATAGCCTGGAGGTAATTTAATGGCATATTTttagtgtgtctgtgtgttgacTATAACCCATCACATAAagtcaggtgtggaattttctacTTGTGGCTTTATGCTGGCACTCAAAAA-------GTTTTAGACTTTGAAGTT-TTGAAGG----TTTTCACATTGGGAGGTTTGAATTAGAGATGTCCAATCTGTAAT------GCTATGAAACACAGA

a score=4251
s chr3            50828333 147 + 160039680 TTTGGAATATTTGTGTCCATATAATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGAGATGATTTTGTACGATATTTTTGACTTCTTTGTATTTTAACA
s HiC_scaffold_1 121437965 130 + 233722169 TTCAGAATATTTGCATATGTATAATAAGATACCTTTGAGGTGAGACTCGTGTCTAAATATGAAATTCACTTGTGCTTTATACACAGTTCATACACAtaggctg---------------aatatttttaa--taattttattttaata

a score=3579
s chr3           51054106 76 + 160039680 ATGATGACCATAGCTAATGACAACATCATAATCTTGAAGAATGATGGGAGCAGATGTCACATGTCCCCACCACAGA
s HiC_scaffold_1 54463864 76 + 233722169 ATAATTATCACAGTTTGTAACAACATACTATCCTTGAAAAGTGCTGGGAGCAGATTTTAGGTGTTCTTACCACAAA

a score=13767
s chr3           51571088 664 + 160039680 TTGTCTTCATAACAAAATTGGCTACAACTCGACCGATTGGCCCTTTCTCTTCTTGTTACC-CCTGGTTCATAATGCTTTTATCTCTCAGCAACCAACATCCTCTTAGACCTGTGGTTGGGCTCAACATAATCAAATCTCTGCACAGCCTTCTTTGGAATGCTAGTGGAAAATTTTTGTGGAAAATGGGCTTCAGCTGCCTACTACAGACACT---------GTCATAGC-CTGCTTCCTCTGGTCACCCAGAGAGTCCTGGGCCATCTTATTCTGTGTCATTTTGTGGGGTGGGTGCTTACCACATTTATCGAAGAAGGTCCAGCAGGTTTTAGGAACACTTGCTGTGTT-----TCATG-GATCACCACCATTAACCAGACCCTTTGTGAttgctgttgctgagacaagatcttactacactgtgcatcctagagtagcctcaaactcacagcaatcctccggcctccgtttccctggagctgggaGATGCCCTGCCCTGCCTTGCTGGTAACAATCTGTTTttttttttgttggttttttttttggtttttcgagacagggtttctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcctcgaacttaga--aatccgcctgcctctgcctcccgagtgctgggattaaaggcatgtgccaccac
s HiC_scaffold_1 30501843 607 + 233722169 TTGCCTTAAACACAAAGTT---TAGAACTGGATCACTTGGCCCTTCCTCTTCTTGTCTCCTCCTAGTTCAAAATGCTTGCATCTCTTAATGGCCAGCATCCTCTTCGATCTGCAGTTAGGTTCCACACACTCCAGCCTGAGCACAATCTTCTTGGTCGTTTTAGC-----CTTCTTCCGGAAAATAGGTTTCGTTTGCCCTCCGTAGCCACTTTGCTTCCGATCGTAGCGCCTCTTTCCTTGGGCATACAGGGAATCCTTGCCCTTCTTGTACTGGGTCACTTTGTGAGGCTGATGCTTGCCGCACTTCTTACAGAAAGTCCTTCGGGTTTTAGGTACGTTGACCATCTTGGCAGTAAAGCGGTCTACACGATGAAAAag-------gcaataaatattttaaagtagagAACATGAAACATGAAAAGT--TAAAGT-GCTTTACAATTAAAACA------------CCATCAC-------------------------------------ATAAATCAGTCGTGTAAtctacccattttttt-----tttttaaacacaggatCTCGCTGTGTAGTGCAGGCCCGTCTTga----actatgtaattcaggcttgcCTCGAATTCAtaccaatcctcctgcttcagcctcctacgCGTAGAGATTACAGGCGCGCACCCCCAC

a score=5663
s chr3            52236859 727 + 160039680 ATTTCTAACCACACTGTCTTTGCAAGGCTGTTTTTTATGTTCTTATCCCTCGGACCACAAATGAGGGGACTCGGAGTGGGAGGTACAGATGGGTAGAACACAGCCAGAATAATATCTGAAAAGGAGAGAGAATTTGA---AGCTGTCAT-TACATAGGCAACACTA---CCTGATATTACATG--CAGAAT------------ACAAGTGGAAAACGCTTTCCGTCTTTTGCCTTTGGTTAGAAACCATCT----GGTGGTAGAGAAAATG----TGCAGGCCTGAGAGGGTGATTGCAGCCAAGATTATTACAATGGTTGCCATGAAAACCATGCCTCTAATCTCCTTGACTGTTACCT----GGAGG--------CCTAAGAGCCTTAAGAGCTGTGGAATATCACAGGGGAAAAATGATGAAGTCTATTGGACCCACAGCATGGTAATGAGAAGGCTGCAGCTATATACA----GGAACCCAGACAACATAGCACTGAGTCATGGCACAGCCATTATCTGAATGCAAGCACCTTGAT--TCATGATCTCATAGTGCAAGGGCCAGGAGATGGCCACATAGCAGTCATAGGGCATCATTGTAAGGGCGGCTGTCTCAGTAGAAGCCAAGTATATGAAAAAGAAGGCTTGAAGAACACATTCAAGGAAAGAAACAAGATGTCGTGAGTACACGGGTTGATAATAGATATG---GGAACTGTGACAGAGATGTAGCAAAAGTCTAACATAGTCAACTTTCT----TAGAAGTACATTGGGG
s HiC_scaffold_1 168220592 755 + 233722169 ATTTCTGCTCATGATTTTCTT-CACAGCT-TCTTTCACCTCCttattcctcaggctgtagatgatGGGGTTCAACATTGGGGTTACTACTCCATAAGACAGTCCAATGATTTCATCAGATGCTTTGGTAAACTTTGACTTAGGCTTCATGTACATAAAAAGGGCTGAACCATAAAATAAGATGACCACAGTCAGGTGGGCTGAACAGGTAGAAAaggctttc----tttttcccctcagAAGAATTAATTCTCAAGATGgaagagagaatgaaaatatagGACACACAAATTAACAGCAG-------------AGGAATCACCAAAAAAACAATACTTGCCACTGTCATGATAAGTACATTTATGGAGATATCTGAACATACAAGTTTAAGAAGAGCCAGGATCTCACAGGT--AAGATGATCAATGACATTATTACCACAGAAAGGTAACACCATTGTCATTACTGTTTGCACTAAAGAGTTTAGACAGCCTGTGACCCAGG-ACCACACAGCCAT-GTGTACATATAA-CACCTTGTTCATGATGATGTGGTACTTCAGTGGGTTGCAGATGGCTGCATACCTGTCATAGGCCATCACAGCCAGCAGGACACACTCAGTAGAACCCAAACTAAGGGAGATAACCATTTGTAGAGCACAGCCAATGAAGGAGATGGATTTTCTTTCAGACGTAAAC--ATAATGAGCATGGGAGGAATTGATGATGATGTGTAACAAATGTCCAAGAATGAGAGGTTTACAAGAAAGAAGTACATAGGAG

a score=4675
s chr3            52502990 128 + 160039680 GCCCTGCCCTAAGTGAGTCCGTACTGTGTGAAACAGTAGCTCTCAGGAGGAGCTTTGCCCATGCCGACCCTACTTTGCAAAGGGACATTTGGCTCCATTTTGAGCATAAACACAGGGGCAAGGTGATT
s HiC_scaffold_1 233422720 126 + 233722169 GCCCTGC--TGAGTTAATTCATACTGCTTAGTACAGCAGCTCTCAGGCTGTGCTTTGCCCTGAGCAACTGTATTCTACAAAAGAGCAATTTGCTGCCTTTTGAGTGCAAGTGCTGAAGCAGAATGACT

a score=6486
s chr3            52729673 288 + 160039680 CATTTGGCTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGA-GGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTT
s HiC_scaffold_1 207408880 248 + 233722169 CATTT--CTTATCCAACATGCTTTAGACCAGaattgttttg------------------gattttggaacaCTTGAGCATACACAGTAAGCCATTTTGAGGATGGGACCTAAAG---AAGAGACTCATTAgtttcata-aatacattatacACAC---------GCCTGAAGATTATTTTATACACTATTTTTAGTGCCCTTGTGTTCTGACTGTGGCCCATCACATGAGGTCAAGTGTGGAAGTTTCCAC-TGTGGCACCATATT-GGGCT------ATTTTGGATTT

a score=4688
s chr3           52729680 293 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTT-TTAATTTTAGCAAACTTGCATATCCGT--AATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTTGCAG
s HiC_scaffold_1 12433146 252 + 233722169 CCTGTGTAAAATGTTTGGGACCACAAGTGTTATA----GATTTCAGATTTGTTTGCGTTCTGGAACGTCTATGCCCATTCAATTTGGTATCACGAGGATGAGGTTCCAactaaa------catgaaattcattta-tgattCATATACACA------TAAGCTTGAGGTAATTTTATACAAC-----------------------ACTAC----TATCACATGAGGTCAAGTGTGAACTTTTCTATTTGTGGTATCATGCTGGTGCTCAAAAAGGTTCAGATTTGGGACATTTCAG

a score=7941
s chr3            52729680 280 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCT---------GTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATT
s HiC_scaffold_1 138840994 274 + 233722169 CTTGTCTGAAATACT-GAGAACAA----GGAGTGTTTGGACTTCAG-------ATTTGGGAACATTTGCATATACG-AATGAGGCATCTTGGGTAGGGGCCCGAGGCTACACA----CACAAAGTTCATCTG-TGCTCCGTACACACCTTACACACACAATCTAAAGGTTActttatacagtatttttagtgTACCTGTATTCTGACTGTGACCTCCAGAAGAGGTCACAAGAGATTAGGTGTGGGATTTCCCACTTATCACATCAAGCCAGTGCTCAAAAAGTTTTGGCTT

a score=7373
s chr3            52729680 289 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTG---TTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTT
s HiC_scaffold_1 212431588 259 + 233722169 CTTATTCGAAATGC-----AGTAGAAGTGTTTTAAATTCTGAgt----agttttggattttgaaatatttgcatata-ataatGAAACATC--------------------AAGTCCAAACATAGACTTTCTCT-----TTCACCTGCGCCATATATACCTGGCCTGATGGTAA-TTTATGCAGCACTTTTAGTGCACCTGTGTTTTGAGTGTGAGCTGTCACTTGAAGTCAGGTGTGAAGTTTTCCACTTGTACCGTCATGTCAATGCTcaaaaaattttagatttaaaaattt

a score=6377
s chr3            52729680 274 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGA-------ATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTT
s HiC_scaffold_1 223410702 241 + 233722169 cttatccaaaatgcttgggaccagaagtgttttg------------------gATCTGAG-AAATTTTCCTGCCTGTG-TAAGACA----------GGAAGcaatat---gtatatttacatatacattaattcattta-tgtttcatatacacA------TAGCCTGCAGGTAGCTCTGTACAATATTTTCAGCACACCTGTATTTAGATTATGGCTCCTCACATGAGGCCAGGTGTGAATTTTTCCACTTGTAGTGTAAAGATGGTGCTAAAAAAGTTt

a score=5971
s chr3            52729681 284 + 160039680 TTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGC-------------TTTGGATTTCAGA
s HiC_scaffold_1 184099715 249 + 233722169 TTTTCCAAAACACATGGGACCAAGAgtggttt---tggattt------------tttaaaaatattacatatacataA---GATATCTtggggatggga-----cccaagtctaaacaggAAATTCATTTCACCTT--ATACACAC----------CCTCacggtaattttatacaatattttttgcG-----------TGACTA--ACCTGTCACACGAGGTCAAGTGTGAAAATTTCCACTTGCAGAGTCACACTGGGGATCAAGGGTCAGGGAATaagcatttcagatttcaga

a score=6698
s chr3            52729684 303 + 160039680 TCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTA-ATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGG----TCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCAT----GTCAGAGCTCAGAAGGCTTTGGATTTCAGAG---TTTGCAGTAGGGGTTCACAGA
s HiC_scaffold_1 135060263 298 + 233722169 TCTAAAACTCTGGGGACAAGTGATG-------CgattttcatgtttttggattttttaatacTTAAGGATACATAACGAGAAAGCTTGAAGATGGAACCTGgatc-----taaatatgaaatttattt---gctTCATATACAC-TTTATCCGTGTACTCTGAAAATAACTTAA-ACAGTATATTTAGTGTGCCTCTGTTTTGACTGTGACCTGACATGTGAAGTTAAGTGTGTGATTTTCCACTTGTAGTACCATGACAGTCAGTGTTCAAATTGTTTCAGATTTGAGAGCCTTTCAGACTTTgggttttcaga

a score=5765
s chr3            52729688 272 + 160039680 AAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAA---------GTTTTT----AATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATG--------TACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATT
s HiC_scaffold_1 152545046 276 + 233722169 AAATGTCTGGGACCAAAAGT----TTTTCAGATTtcacagtagttttgttttttccagattTCACAATATCTGCATTTACATGATGAGATCTCTTGGGCACTGGACTTACAcctttataaatacaaaa--ttaattaatatttcattatatacttTGCATACTCACATATCCTGAAAGtaattctattctat-tttttagtGTGTCTTTATTTCAACTGTGGCCTATCACATGAGGTCAGGTATGGAATTTTCTACT----------TGTCAGCACTCAAAAGGTTTCGGATT

a score=6925
s chr3            52729688 330 + 160039680 AAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTT------AATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTA-----ATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTTGCAGTAGGGGT-TCACAGACATGCCACCCTCTCTTGTGAGGTCTGTGCAG
s HiC_scaffold_1 205537946 304 + 233722169 AAGTGCTCGGGGCCAGA-----TGTGCTTTAGTTTCAGCCTTTTCTCCTGGATTGCATAATATTTGCAGATACATAATAAGAGAGCTTGGGGCTG-----AGGCCCCAGTCGACACACAAAATTCATTCATCTTTATATCTTATAAGCATAGTG--------TGAAGGTAatttaattcaatatttttagTACTCGTGTGTTTTGACTGTGACCTGTCACATGAAGTCAGATGTAGAATTTTCCAC-TGTGGCATCATGTTAGTACTCAG-----------TTTCAGATT------TAGGGGTGTTTCAGACA--CTAGCTTTTTGGGTCAGGGATGTGTGG

a score=5558
s chr3            52729690 313 + 160039680 ATACTTGGGAACAGAAATGGTTTG----TTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATC-AAGTGGAATCCTGAACTTTGTTT--AATGTTTCATGTACACAGTTGCCCGGTCTCA----------GGGTCCCTTTGTACAATGTTTTC----AGTACCCTTTTGTTTTGACTACAGCC--TGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAG---TTTGCAGTAGGGGTTCACAG-ACATGCCACCCTCTCTT
s HiC_scaffold_1 221976106 335 + 233722169 ATGTTTGGGACCAGAAGTATTTTGAATGTCTGATTT----GTTTTGGATGTGGGAATATTTGTACACATATAATTCAGTATCTTGGGGATGGAGCCCTAATCTAAACAGGAAACCCATTTATGTTTTACATGCACCTTATACACA-TAACCTGAAAGCAAGCCGGGGAAGGATTCCTCCGTGAGCTGGATCCCACTAGTGCACCCGCATTTTCACATATGCCAAGGTCACATAAGGTCAGGCATGGAATTTTCTGCTTGTGGCATCATGTTGATACTCAAAAAGCTTTGGGTTTTggagcattttgaattttgcattcATAATACAtccctctctgtctt

a score=5401
s chr3           52729690 264 + 160039680 ATACTTGGGAACAGAAATGGTTTGT--TTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCT-TGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTT
s HiC_scaffold_1 31357612 235 + 233722169 ATGCTTGAGACCAGAG-TGTTTTGTATTTGAGTCT----TTCtggattttagaatatttgctaATAC---ATGAGGTATCTGTGGGAAGGGA------CCCAAGTTGAAAATCATAC--------GTGTTTCATGTGGACC-TTATACAGTCTGAAAG---------GCAGTAATTTTTGTGTAACACTCTTCAGACTGTGATCTGTCACAGGAGGTCAAATGTGGAATTTCACATTCATGGCATCATGTCAGGGTTCAGAAAGTTT

a score=7484
s chr3           52729695 272 + 160039680 TGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTT---AATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGA-GGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGT
s HiC_scaffold_1 34376128 270 + 233722169 tagaaaaaaaaaaagtat-ttcaggCTTTAAgccttttcagattttggaatatctgCATATACATAATGAGACAGcctgaggatgggacccaagtctaaa-------cacaaCATTCCCTTACGTTTCATCCGCATCTTACGTACCAGCCTCCAGGGGATTTCATCACGATATTGT-ACTGTGCCTGCATTTTGACTGTGACCCATCACAGGAGATCAGGTGTGGGATTTTCCACTTGTAAGGTCATGTCAATGCTCAAGAGGTTTCGAATTTTGGagt

a score=6297
s chr3           52729714 251 + 160039680 TTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGT-AATGAGACA----TCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGA
s HiC_scaffold_1 32132005 231 + 233722169 tttgaattt----tcttgCATTTTGGAATACTGTCATGTACATTAATTGCATACCTGTCTTGGGA-------CAGGACCCAATCTAAACATCAAATTTGT-----ATTTCACACACATAGC--------CTGATTGTAATTTTGTACAATATTTTCAGTGTGCCTACATTTTGACTGTCACTTGTCACCTGAGGTCAGGTGTGAAATTTGCTACTTGTGGCATCATTTCAGTGCTCA-AAAACTTCAGATTTAGGA

a score=6410
s chr3           52729759 232 + 160039680 TGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCC-CGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGG------------------CTTTGGATTTCAGAGTTTGCAGTAGGGGTTCACAGACATG
s HiC_scaffold_1 61992030 243 + 233722169 TGAGATATCCTGGGAATGGGACCAAAGTCCA----AATAC-AAACTTTATTTA-TGTGTCAGGTAAACTGTACCCATAGCCTGAAGg--catttttatgatatttctaGTGTGCTTGCACTTTGACTGTGACCTGTCATGTGAGATCAGGTGTGGAATTTTTTACTTGTGGGGTCATATTCATGCTCAAAAAGGCAcattattttgaagtatttcagattgcAAGTTTTTAGATGGGGGATGCTAGACATG

a score=4928
s chr3            52729765 207 + 160039680 ATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAG---TTTGCA
s HiC_scaffold_1 130584507 202 + 233722169 ATCTGGGGATGGGATgaaaatctaaata------tgaaatttgTTTA-TGTTTCTATTACA-ACTCAGAGAAGCTGAAGGCAATCTTACCCAATATTTTTAGTGTGCCTGCATTTTGACTGTGACCTGTCACATGAGGTCAGGTGTACAGTTTTCCACTTGCGGCAGAACgtctatattaaaaatttttttggttttggagcATTTTGCA

a score=3944
s chr3            52729849 117 + 160039680 TTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAG
s HiC_scaffold_1 186617295 104 + 233722169 TTTCCACAGTACTCTTAGTACACCTGTACTGTGACTGGGACCCATCACATGAGGTCAGATGTGGAAGTTTCCACT------------TCTCAACTcagaa-gtttcagattttggag

a score=4070
s chr3           52836250 205 + 160039680 CTCCCTCCT-----TCTCTTCTGTTTTCTGGCCGTAAGGT-AGCA--TTGATTCTGCTCCGTGCTCCTGTTATTGCTGGCCAGCGTGCCCACCAGTCAC---CTGAAGCAACAGGAATACTGATGAGAGCCTAGAACCTCCAAAAGCAGGAGTCAAAACTCACCTGTTCTCTTAATGAGTTAATTAACTCGAGTCTTCTGTTATTGTGGCAAAAAG
s HiC_scaffold_1 48279903 214 + 233722169 ctccctcctctgtATTTCCTTTGCTTCATGATTGGGAGGTGAGCAGTCTTGTTGTACAAAGAGCTTCTGTCATCATGTGCTATCCT--TCGATAGGCCCTTtctaaaacaggaggatcaacATCCATAAATTGGAACTTCCAAAATTGTGAGCCCAAGAAATCCTTTTCTCTCTATAAATTGATTAACTCAAGTTTTTTGTTATAGTTACACAAAG

a score=7046
s chr3            53346473 142 + 160039680 GTGCCATC----GTGTGAATCCTTACAGACCCAACTTCTTTCTCCATCAGTGTCTTCTCTTGGAGTTGTACCTGATTTTGTTACCAGTTTTCATCAGAATCCATTG-AGGAATAGGACAATTTTGCTTTTGTTTCTTGACTAAGTAT
s HiC_scaffold_1 114546278 146 + 233722169 GTGCCCTCTCATGTGCAATTCTTTGCAGACCCAACTT-GGTCTTCTCTAATGCTCCCTCTTAGAATTGTACTTGATTTTATTACCAGTTTTCATTAGAATTTACTGCGGGAATGGGAtgattttgcatttgtttcttgGCCAGGAAT

a score=6805
s chr3            53346481 134 + 160039680 GTGTGAATCCTTACAGACCCAACTTCTTTCTCCATCAGTGTCTTCTCTTGGAGTTGTACCTGATTTTGTTACCAGTTTTCATCAGAATCCATTGAGGAATAGGACAATTTTGCTTTTGTTTCTTGACTAAGTAT
s HiC_scaffold_1 185142896 129 + 233722169 GTACAACTCCTCACACTCACTGCTCGGTCCTCCTCCAGTGTCTCCTCTCGGAGTTGTACCAGACTCTATTACCAGTCTTCATCCGAATCCACTGAGGAAtgg-----ttttgcttttgcttcttggCCAGGAAT

a score=3366
s chr3            53347189 46 + 160039680 CCAGGAATCACTTGATTCTGAAAGTCTTGTGAGAAGATATGGCAAG
s HiC_scaffold_1 185143017 46 + 233722169 CCAGGAATCATTTGATTTTGAAAATCTTGTGAGAAGACATAGTTAG

a score=4208
s chr3            53348564 216 + 160039680 AATGTAGCAAGGCCCAGAGGTAAAGCTTTGGGGAAGTAATTATATTCTGAGGGCTTTGGCCTCATCTATGCTTTAATCCACTGATGAGTCATAACCTAGTGGACTGTTGTGAGAAGATTGACACTTTATAGGAGAAACCTAGTTGAAAGGAACGGAACCTCGGCGATGTGTGCTC--AGGAGCTAACCTGTCTGT-----CTGTCCCTGCCTCTTTGTCTCCT
s HiC_scaffold_1 121748444 197 + 233722169 AATGCAGCAG----TAGGGGTAGAGCTTTGGGGAGGTGATAGCATCCTGAGGGCTCCAACCTCAGCAATGGACTAATCCTTTAATGGATT----CATAATGAGCTA------------------TTTGGAGGTGAGGACTAGCTGGGGGTAATGCATCATTGTAGGCCTGCCTTTGAAGGGGATATTTTGTCCCTGACCGCTTTTCCTGTCTCTTTACTTGCT

a score=4097
s chr3           53394165 73 + 160039680 TCTCAACATCAACACACTGAGGACCTGGCTTCCAACACACAAACTGTCTCAGAACACATCTTAACCATATCCA
s HiC_scaffold_1 34199341 73 + 233722169 TCTCAACATTACTATGCTGAGAACCAAGCTCCCAGCACACGAACTGTTGGAGGACACATTTGAATCACATCCA

a score=26047
s chr3           53401596 689 + 160039680 TTTTTTTTTTTTAAACAGATCTTGCCT-GAGTTTATTTGTAAAAACAGCATAG---GACACTGGTCATCTGCAAATAGTGTGTGGGGAGGTGTGTCACAGCAGTCCGTCTGTCTTCACGCTGGCAGG---AGCCTTTTCTATGGGGCCTTCACAGGGGCCTGGGCACCTTTGGGGACATGGGCACCTTTGGGAGCCTGGGCTGGAGCTGAAG------------------CCTGGGCCTTAGCTGGAGCTTTGGCCCCTGCCTTGGTTTGGACCTTGGGCTTCGGTTGGCAGAGCCTCTGACCCTTGGCCATGTAGCTT------CGAATCCGCTTCCCAAGCTTAGGGTGAGCGATGAAAGCCAGCTGCTTGAGTTTGGGG------CCTTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTCACCAGGGCCTTGATGGCCTCTGCGCGCGCACTCACTGCCTTTGCATTGCTGGCCTGCATCTTCTTCAGGCCTTTCTTGTTGTG----------AACCGCATGTTCCTCAGGAACTTGGGGTCAAC--------CCCCTTAAGAGATTCGTATCTTTGCGACCGGGGTTTCTTGATGCCATTTCTGTGCCATTTGCGGGACTGGTTGTGTGTGGTGTGGTTCTTGGACTAGGCCTTGTCTGCACGGTAACCCGCGGCTCCCACAGCGCCTGGAACCGGAAGACACAGTGGGATTATTTTAAATGCTGAGTTTGCAAAAGTC
s HiC_scaffold_1   787967 708 + 233722169 ttttattttttt-------tcctgccttggGTTTATTTGTACGATGAACACAGAAGGACGCCAGCCCTCTCCCCCT-GCATGGCAGCCTAGGGGTCACGCCAGTccttctgtcctcacattggcagTTACAGGATTTACTGGGGAGCCTTCACAGGGGCCTGGGCA-----------------ACTTTTTGGAGCCTGAGCTGGAACAGAAGTTGGAGCAGCAACCTGAGCCTGGGCCTTGGTTGGAG-TCTGGCCTTTAACTAAAT-----CCCAGGCATTTGGCTGGCAAAATCTGCGACCCTTGGCAATGCAGATGAAGACATGGATACATTTCCCAAGCTTGGGGTGCGTGATATAGGCAAATTGAATGAGCTTGTGGTTCACACCCATTGGGATCTTGGGCTTGACCTCcctgggctccaggagggtctCAATAGGCTCCGCACGTGCATCCATGGCCTTGGCATTGGGGGCCTGCATTTTCTTGAAGCCCTTCTTGTTGTGCTTCTTGGAAAAATGCATATTCCTCAGGAACTTGGGATTTACGAGATATGACTCTTCAGAGAGTCATATCTTTGCAATCAGGgtttcttgatgctatttctgTGCCATTTTCAGCACTGGCTGTGCGTGGTGTGGTTCTTGGACTTGGCCATGTCTGCACTGTAAAGCACGGCTGTCA-AGtgcctggaaccagaagaaaagaaaaaagcatttcatgt----atttttaaaaagtc

a score=5222
s chr3            53445830 164 + 160039680 GTCAGCCACGTGCCAGTC--ACACATACAATTGTGTGTGGTACATAATCTTTGATAATAAGTGACTTTGTTATGGCTTTATGTATTTGCTGCA---AAATAGTTT-------ACCATTTAT-------GAATGTATTCCTTCTTACAAAAAAGAATTATCTATAAATTATTATGCTGTGTTAT
s HiC_scaffold_1 146459582 176 + 233722169 GCCAGCCATATAAAAGTCCAGGACATACAACTATGTGCAGCACATAATCTTTAACAACAAATAGCAATGTTGTTGCTTTATGTACTTGCTACACTTAAATCATTCTTTTGGAAACTTTCATATAagcagaatttatatttttt-----aaaaaaatttaccatAAA--ACTATGCTGTGTTAT

a score=4054
s chr3            53497956 91 + 160039680 CTTGGTGTGTGCGGCTGGATCCTGTTTTTCCTTTCCTTCCTGCTGATGCTCGTTACCTTCCCAATCTCAGTATGGATGTGCTTGAAGGTAA
s HiC_scaffold_1 152318314 91 + 233722169 CTTGGAATTTGTGGATGGATTTTGGTGGCTGTCTCATTCCTATTCACACTTGTAACTTTCCCAATATCGATATGGATGTGCATAAAGGTAA

a score=3884
s chr3            53498114 84 + 160039680 TTCTCTCAGATCATTAAGGAGTATGAGCGCGCTGTTGTCTTCAGACTGGGACGCATCCAAGCTGATAAAGCCAAGGGACCAGGT
s HiC_scaffold_1 152319737 84 + 233722169 TTCTTCCAGATTATAAAGGAGTACGAGAGAGCCATCATCTTTAGACTGGGCCGCATTGTACAAGGAGGAGCCAAAGGACCTGGT

a score=4331
s chr3            53500725 111 + 160039680 TTCAAATCCATTTTATTCTTTTAAAGGTTTGATCCTGGTCCTGCCTTGCATTGACGTGTTTGTCAAAGTAGATCTTCGAACGGTTACTTGTAACATTCCTCCACAAGAGGT
s HiC_scaffold_1 152321231 111 + 233722169 TTTGACCCCGTGTTTTTTTGTTGCAGGCTTGTTTTTTATTCTGCCTTGCACTGACAGCTTCATCAAAGTGGACATGAGGACCATTTCCTTTGACATTCCTCCTCAGGAGGT

a score=8944
s chr3            53503163 222 + 160039680 CAGATCCTCACGAGAGACTCTGTGACCACCCAAGTGGATGGAGTCGTCTATTACAGAATCTACAGCGCCGTCTCAGCCGTGGCCAATGTGAACGATGTTCACCAGGCCACGTTCCTGCTGGCTCAGACCACTCTGAGAAATGTCTTAGGGACACAGACCTTGTCCCAGATCTTGTCTGGGCGAGAAGAGATCGCACATAGCATCCAGGTAAAGACCTCACTA
s HiC_scaffold_1 152325740 222 + 233722169 CAGGTCCTCACGAAGGACTCAGTGACAATCAGTGTGGATGGTGTGGTCTATTACCGCGTCCAGAACGCAACCCTGGCAGTGGCAAACATCACCAATGCCGACTCAGCGACCCGTCTTCTGGCACAAACTACTCTCAGGAATGTTCTGGGCACTAAGAACCTTTCCCAGATCCTCTCTGACAGGGAAGAAATTGCCCATAATATGCAGGTAAGAGATTCACCA

a score=6836
s chr3            53505425 144 + 160039680 AACAGACCTTGCTTGATGATGCCACCGAGCTCTGGGGAATCCGAGTGGCCCGGGTGGAAATCAAAGATGTCCGGATTCCTGTGCAGCTGCAGAGGTCCATGGCGGCTGAGGCTGAGGCTACCCGGGAAGCCAGAGCCAAGGTAA
s HiC_scaffold_1 152326816 144 + 233722169 AACAGTGCACACTGGATGATGCCACTGACGACTGGGGAATAAAGGTGGAGCGAGTGGAAATTAAGGATGTGAAGCTCCCCACGCAGCTCCAGAGAGCTATGGCTGCAGAGGCAGAAGCATCCCGGGAGGCTCGAGCCAAGGtaa

a score=9096
s chr3            53507406 205 + 160039680 CTCTTGCTTCTCTCACTC-TAGGTCCTTGCAGCAGAGGGAGAAATGAATGCTTCAAAGTCTCTGAAGTCAGCTTCCATGGTGCTGGCAGAGTCCCCCGTCGCCCTCCAACTTCGGTACCTGCAGACCTTGACCACAGTGGCCACGGAGAAAAATTCCACCATTGTGTTTCCCTTGCCGATGAACATACTTGAGGGCAT--TGGTGGCA
s HiC_scaffold_1 152333365 208 + 233722169 CTCCCCTTTCCCCTGCCCATAGGTTATTGCTGCTGAAGGAGAAATGAATGCATCCAGAGCTCTGAAAGAAGCCTCCATAGTTATCACCGAGTCTCCTGCAGCCCTTCAGCTTCGATACCTTCAGACATTGACCACCATTGCTGCTGAGAAAAACTCCACAATTGTCTTCCCTCTGCCTATAGATATGTTGCAGGGCATCATGGGGGCA

a score=3994
s chr3            53512003 65 + 160039680 TGTCCCTAGGGACACTGCAGATGTGGCTTCTGTGCCACATGTATGTCAGTAGGAAGCAGAGAGGA
s HiC_scaffold_1 194511549 65 + 233722169 TGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAA

a score=21263
s chr3           53666656 758 + 160039680 TTATTTAGTTTTTTTACTCATAATCATAAACTTAACTCAGCAATCCAGCTAGATTTGGAGGGGACTGAGAAAAATATGGAACCCAAAGAACTTCAGTGAGAGCAGAGATGTCAGGGCATTGCGAGCAGATGGGGTGGGTGGCAGGGCGCTCTCCTGAACTACAGAAGGAATGATCTTGTGGGTTAGAGCCCTGAAAGTCAAAAGAATTAGAT-----CAGTCCACAATCGGAAATGGTAATCTTCTTGATGAACTTGCCATTCTTGGACTCAAAACACTTC-------CACGGTACACATGCCCTCTCACACGT-CCTGAAGACCACATGCTTGCCATCCAGATGCTCAGTCTTGGCGGTGCAGATAAAAACCTGCGATCCATTCAAGTTTGGTCCAGCATTTACCACAGACAAGGTGCCAAGACCTGTATGCTTCAGGATAAAGTTTTCATCCTTAGATCTCCCACCATAGATAGAGCTGCTGCCAGTCTGATTATGGCATGGTAGGTCACCAGCCTGGCACAGGAATCCTGGCCTAATTCTTTGAAAG-GGAAGTATCTGTAGGTCCAGATCCTTTCTCTCCAGTGCTCAGAGAACAAAA-GATTTCTGTTGTCTTTGGAACTTTGTCTGTAGACAGCTAGAAGGAGACACAGCCCAAGGGCT--CCATCACAGCACTATCAAAAAAGTGCAGTGAGGTTCAGCACGATGGCAGCAAGCAGCAAC------AGGGGGCAGTGGCATCTGCAGAGCC--TCATTAACTTATTTTTAAAATTA
s HiC_scaffold_1 72460690 730 + 233722169 ttatttaggttTT--ATTCATAACCATAAGTTAAACTctgcaaa----------------------aaggaaaatatggaacCCAGAACACTGCAGTTTCAGCAGAGATGATGAGGTGTTTTGAGCAG-----GTGGGTCGCAGGGTGCCCTTCTGAGTGAGAGAA---ATGGTTTTGGTGAT------CGTGATA--TAAAGGAGTCACATGTGTGTTGTTCACGATCGGCGATGTTGATCTTTCTCCTGGTCCTGCAGTTTCCTGACCCGAAGCGCTTCATAGCACCCTGGAGTTCATATCCTCTTTCACTTTCCTGAAGAACATGAGCTTGCTTTCCAACCTCTTGCTTTTGGTAATGCAGATGAAAAACTGAAACCC-TTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCA---CTGAATTTCTC-CTATAGAC--ACTTGCCACCAGTGGCACTGTGGCCTGTGACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAA--CCTAatgttttctctccagtgttcacagcaaaaaatgttttctgttgtctttggAAGTTTGTCTGAAAATAGCTCAAATGAGATGCAGCCCAAGGGCTTGCCATGGGCGTGATATCAAGGA--CACACTGGAGTTGACCACAGTTG--GCAGGCAACAACTAAATAGGAAGGTAGCAGCATCCACAAAGCcatttctgatttaattcatAACATTA

a score=5110
s chr3            53666959 182 + 160039680 CTGAAGACCACATGCTTGCCATCCAGATGCTCAGTCTTGGCG-GTGCAGATAAAAACCTGCGATCCATTCAAGTTTGGTCCAGCATTTACCACAGACAAGGTGCCAAGACCTGTATGCTTCAGGATAAAGTTTTCATCCTTAGATCTCCCACCATAGATAGAGCTGCTGCCAGTCTGATTATG
s HiC_scaffold_1 155171621 183 + 233722169 CTAAATACCACATGTTTAAGATCCAAATGTTCTGCCTCATTTTGTGTTATGAAAAAACTGAGAATTATTCATATCCCATCCTCAACTGGACATAGATAAGAAGCCAGGGTCAGTGTGCCTTACATTAAAGTTTTCATCTTGAAATTTATCTTCATAAATGGACTTTCCTCCTGTCCCATCATG

a score=15068
s chr3            54029850 538 + 160039680 TCTTCTTATGAGCA-CCTGAGGTGACCTGTGAAGATGGTTAG--------------------------CTACTCTCATGGCCCAGAAAAGCCTAAAAAATTCATGCAAATCAAGAAATTCAAATCTTCCTTGTTTGCTTTAAGCACACCCATAACACC-----------TATGGGTACACATATCAGAAAAGTCACCCAAAATCCGAAGGATGCCAGTTTAAAGACGCCATGTGTGTGTGTTCCTGGTCCCAGAGTATAATGATGAATGTACTAGGAACTCCCAGGCCAGAGTGGGGCGGATTGTAGGGTCAGCGGCCCAAAGTGCAGGCTGAATTTTTCCTGCACTCACTTAAAAATGCAGAAAGTATTGCTGAACTTAATGGCTTAGATGTAGAATCTCTAATCACT-AACACATCCA-GTAATCAAATCACCTGAGATGAGCCTACAAGTTATAGAGCTCATGGT-TGATTAACCTGTACATGGGTTCCTCGGACACTCTTGGACCATCCTCACTG-AAAAGGAACAAATTGTTCCAAAACTAGAAGAGGTAGTGGTCCAGAACAAAAATATATCCC
s HiC_scaffold_1 176819650 558 + 233722169 TCTTCATATAAACGGCCTGAAGTGAACTGTGAAACCAGTGAGGCTTCTCCCTGGTAAGTAGGGATTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGT-GTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCACCAAGTATCTGAAGGGTGACTCTTGAAAGAAGCAGTGTGTGT-------CATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTGCTTAAGCCAAATGAGGGCTAGACACAGGATT-GAGACCCCAAAAGAGTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAGA--CTCTAGTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCT-----------GAGCTCGTGATCTAACTAATGAATACCTGAGTTCCCCTGCCACATGGAGATAATCCTTATTGAAAAAGGAACAAATAGTTCCTAGGTCATAGGAGGAGGTTGCATCAAACACAAGAGTATCCC

a score=7033
s chr3            54462945 531 + 160039680 CCACTCCTTCAACCTTAGCCATCGCAGCTATTGCTAGGACACTGTTCAAAGATAAAATTGCCCGACAAGTACTCTGAACCTTCCCTGGAGCCAAGCAGAGACCTGAACCCTAGTGGGAAATGATGTGTGTTGGTGTGAATCATGGCTGGTTAAGATGTGCTTGCCAGTGTACCTCTGAGACTCTGAAGGCCCCTGCAACTATAAGAGTCATGCATAATCCACCTTAATACCTGCCTTAGTGACCGAGTGACTGCCTTCACCAATAATACTCAGCAATAGGAAATACAGTCTG-------------TTTACTCAGGGTAGGTTAGGAGCATTAGCACAGAACTACACCTCGATGTTC--TATTAGGCTGGTGAACCTTAACACTACAAAAACCTGATGCTGATGACAAAGACTCTGGAGTATTCTGAGTCAGGAGGTGACGAAGGGACCCTATCTGTTGAGTTTCTTGTCCATCTAGCTTCACCTGTGTTTTGTTACCTTAGCCTCACACAGCAAGTTCTCCTCAACAGTAGGCAGCACACTGCTAT
s HiC_scaffold_1 112759142 519 + 233722169 CCTCTCCTCTATACTCAGCAAATACAGCTTTCATTAGGACAGTGCTCACTGATAGAGTT--------------TTAAACCTGTCCCAGA----ATCAGAGGCCTGCACTCCAGATGGA---TTTGTATTTCAGCATGCATCACTGCCAGCTATAGCATGAGCTTTGATATACCCCTGACATTGTACAAATCTTTGTGGCTTTAAGACTCAGCTGCGACCCAGCTTAGCATCAGCCTTGGTATCCAAGTGAATGCCTTCATCTACAGTTTCCCTCATTGAACAGCACAGTGTGGAGCAGGATTCCACTTCCTAACTGTAGGACGGGGTAATAAGATCAGAAGTCTGCCTTGGAACTCAGTACAGGGTTGGTGAAACAACTTCCTTCCCAAGCCCAGTGCCCA-AAGAGAGGCTCTATAACATCCTTGGT-AATAGAT-ACACAG---CCACATGTATAAGGCTTCTATTCTGACCAACATTACTTATGACGGGCTACAGTGTTATGTGTCCATGAATCTGCTACAGCAGTAGACAACCCATGGCCAT

a score=14250
s chr3            54481465 553 + 160039680 ATGGAGGGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGG-TGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAAC---CATAGAGGTTATGGAAGAC----------------------AGGCAGAGTGGGAAAAAGAG----------------------AGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGA
s HiC_scaffold_1 160031537 499 + 233722169 ATAAAGAGCCACAGTTGAAAGGAGCCAGGGCAGTTGAGAAG---ATTTATTTGCTTGTCTAAACTTTGAAAGTGCAGAGGATAGTATAAGAGAACACT--GGGAAAGCTGGCACACTCACAGATTGTGT---------------------------------------------------------------------------TGATGCAA---GAACTTGAGTACATAAACTTGATGGGCATGGAGTAGAACTGAAGAG--CTATTTCTAGAGAGGACTCTGTAA-GCCAGATACACATCTAACAGTGAAGAAGATTTTTGTTGGCAGCATTAAAGatgatac---agaaaataatttgagaGGCTACTTTGAGAAGTATGTCAAGGCTGAAGCAGAAATGGGGGTTGTGATACACACCCattatcctagcactcaggaggctgaggcaggagaagaggcACTGGAGACTGCACAAGTTCAGGGACAACCTGGGCCTCATAggaagatcctatctca------aaaa-----attcagaaat--cacACTGTTGATGGGCATAAGTGTAAAGTACAAAAGactttatttagaggaaaaa

a score=16718
s chr3           54481479 774 + 160039680 TCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACT---------------------------------------------------------------------------------------------------------------------ACTTTGAAAAGTATGGCAAGATTGAAACCATAGAG-GTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATC---ACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTT-ATG--GGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtggtgatggtggATATAATGGATTtggaggtgatggtggcaactatggtggtggtcctggttacagcag
s HiC_scaffold_1 21080569 809 + 233722169 TCCCAAGGAGCCAGAGCAGCTGTGCAAGCTCTTCATCAGAGGGCTGGGCCTCAGCACCACCAAGGAGAGTCTTAGAAGGCACTTTGAGCAGTGGGGAACACTCACCGACTGTGTGGTGATAAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTCGTCACTTATGCCAGCgtggaggaggtggaggcagcCATGAAGGCCAGGCCACACCAGGTAGATGGCAGAGTGGTGCTAACCAAGAGAGCTGTATCCAGGGAAGACTCCCAAAGACCGGGTGCCTAC-----------------------------------------------------------------CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTGAACAATATGGAGAAATCGAAGTCATTGAGAATCATGACTGACCGAAACACTGGAAAGAAAAGGGGCTTCGCTTTTGTAACCTTTGTTGACTATGATTCTGCAGACAAGGCTGTGATTCACAGATACCAGACTATCAACGGCTACAGGTGTGAGGTGAACAAAGCCCTGTCCAGGCAGAAGATGGCTAATGCTTCATCTAGCCCAAGAGGTC---CACATGATGCTGGAAATTTTGGTGGTGGTCGTCGAGGTGGTTTTGGTGGCTCTGTCAG---TTGTGGTCGAGGAGGAAACCGCAGTGTTCCAGGTTCCTTTGATGGCACAGGGATTCACTACA---------CTGAAATTGGTAATGGAAGAC-------ATTTTCAAGTG--GGCGGAAGCTACACTGGTTTTGTCAGTTACCACAG

a score=31477
s chr3            54481479 1131 + 160039680 TCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGAT-----CCCCAAACA--AAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATC-ACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtggtgatggtggATATAATGGATTtggaggtgatggtggcaactatggtggtggtcctggttacagcagtagaggaggttatggaggtggtggACCAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCtatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtggaaactataatgactttggaaattatagtggacagcaacaatcaaattatggacccatgaaggggggcagttttggtggaagaagctcaggcagtccctatggtggtggcta---------tggatctggaggtggaagtggtggatatg-------------------------gtagcagaaggttttaaaataaaacagaaacggctacagttcttagcaggaga-gagagcgag-gagttgtcaggaaagctgcaggttac
s HiC_scaffold_1 138522958  996 + 233722169 TCCTAAAGAACCCAAACAGCTGTGGAAGCCCTTCATTGGACAGCTGAGCTTTGATACAACTGATGAATGTCTGAGAAGCCATTTTGAGTAATGAGGCACACTCACCAACTGTGTGGCCATGAGAGATGAGAGTTCCAAACACCAAGCGTTCCAGAGGCTTTGGGGTTGTCACTTATGCTACTATGGAGGAGGTGGGTGCAGCCATGAATACAAGGCCTCATAAAGTGGATGGAACAGTTGTAGAACCAAAGAAAGCTGTTTCAAGAGAAGATTCTCAAAGATCAGGTGCCCACTTAACTATGAAGAAGATCTTTGCTGGTGGCATTAAAGAAGATACTGAAGAACAGTACCT-AAAGGTTATTTTGAACAGTGCAGAGAAAATGAAGTGATTGAAATCATGACTGACTGAGGCAGTG-----------------GTTTTTGTAACCTTTGATGACCATGATTCTATGGATAAGATTGTCATTCAGAAATACCATACTGTGAACGGCCACACCTGTGAAGTAAGGAAAGCCCTGTCAAAGCAGGAAATGGCTAGTGCTTCATCTAGACAGAGGTC---TGAGTGGTTCTCGAAATTTTGTTGGTGGTTATAGAGGTTATTTTGCTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCAAAGTGGCTTTGGTGGCAGCTGTGGTG------GAGGTGG--ATAGTGACTGTGAGGATGGCTACAATGGACTTGGTAATTATGGAAGCAA------------------------------------TTATGGAGGTGGTAGA------------------------------------------------------AGCTACAATGAA----------------------------------------------------CCGGCAATTATAGCA---ATCAATCTTCAAATTTTGGACCCTTGAAAGGAGGAATCTTTGGAGGTAGAAGCTCTGGGTGCTTCGGTGGTGGAGGCCAATACTTTATCAAACCATGAAATCAAGGTGATGATGGTGATTCCAGCAGCAGCAAAAACTGTCAGTGGCAGAAGGTTTTAAATACTTCCAGGAA-----ACAGAGCTTGGCAGGAGAGGAGAGCCAGAGAAATGACAGGGAAGCTACAGATTAC

a score=10738
s chr3            54481745 495 + 160039680 CTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCC-CTTTCTAAACAAGAGATG--CAGTCTGCTGGATCA-CAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGG---TGGAAGAGGTGGCTAtggtggtggaggtggtggcagcagaggtagtt---atggaggtggtgatggtggATATAATGGATTtggaggtgatggtggcaactatggtggtggtc
s HiC_scaffold_1 100110938 468 + 233722169 CTATAGTACTTGGTCCCTGCTTAACTATTAAAAAGATCATGATTGGT----TTAGTGAAGACACTGGAAAGCATCATGTAGGAGATTA-----AACATCATGGGAAAATTAAAGTGATTACAATCACGACTGACCAAGGTAGTAGCAAAAAGAGAGGATTTGCTTTCAGAACTTTTGATGACCATGATTCTGTGAATGAGATTATCATTCAGAAATACTGTACTATGAATAGCTACCAAGCTGAAGTGAGAAACACCTCACAGCAAGCAAGAAGTGATTAGTGTTTTGTCTAGTCAAAGAATTCAT---AGTAGTTTTGCAAACTT---------TGATGGTGACTGTAGAGGCAAT---GACAACCTTGGTTATGAAGGAAACATCAACATTAGGACAAG------TGGTGGTGATTATGGTGGCAGCATGGACAGCTACAATGGATTTGGTAACAGTGGAAGCAAT---TTTGGAGGAGTAGATG----CTACAGTGGCAATC

a score=4014
s chr3           54567229 152 + 160039680 ACTGTGACATATATGCCAGACACAAATACCTTCATCTTA-GAGGAGAGGAT--TTGTTCTGATTCGTGGTTTCTGAGAACTCAGCCAATGGCTGCTTGGCTCTATGAGTTTAAACAAAGGGA---GCATGTCAAAAT----GGAGCAGACAGTAAAGATGAG
s HiC_scaffold_1 57533199 155 + 233722169 ACTGTGCTATACA----AGACATAAGAA---TCAACTTACAAGGAGAAAATGCTTCTTTTGATTCATGGTTTCAAAGATTTCAGCCAACGGTTGCTTGGTCTTCTTACTTTGGACCTGTGGaagcacagttcatggtggcaggagCACACAGTAGAGGAGGG

a score=3638
s chr3            54811054 94 + 160039680 TTCTAGAACTTCTTCTGGATCTAGACCTAGATTCAGACCTGGACCTGGACTTTGATCTAGAAC--GCCTTGAGTCTTCCTTGGAGCGAGACCTTGC
s HiC_scaffold_1 122746732 96 + 233722169 ttctcgGTTTTTCTCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTATCTTttgacagaatcttgc

a score=3366
s chr3            54811055 60 + 160039680 TCTAGAACTTCTTCTGGATCTAGACCTAGATTCAGACCTGGACCTGGACTTTGATCTAGA
s HiC_scaffold_1 122746745 60 + 233722169 TCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGACCTAGA

a score=7144
s chr3           55504184 316 + 160039680 ATAGATTGAACTGTCCTAATTTGAAAACTTCCAAAGCCAAGTGCAATAAAATCCGAAATTTGAGTGTCAACAC--ATGTCATCCCAAATAGAAAATTCTGCA--------CCTGTGACAGATTGGAGTCAAATACAGGCATGCTAAAAATACCATGGACAGATATTTTCAGGCTATTTACATAAGGTGCATATGAAACAGTTCAATTTTGTGTTTTGATTTATGTT-CCATCCTCAAGATACCGT------------TATGTGCCCGAAAATACTGAAAAATTGAAACAAAAATCCAAACCCAAAAGGCATTTTGAGAAAGAGATGGTTAGCCTGACTC
s HiC_scaffold_1 99062975 321 + 233722169 ACATATTGAGCATCCCtaattcaaaaat-------acaaaatgctccaaaattcaAAACCT---TTTCAGCACCAATATAATAC-AGGTAAAAAATTCTATAGCTAACCTCATGTGACAGATCAAAGCCAAATGCAGATACTCTAAAAATACCATATAAAATTACCTTTCAGCTATGAACATAAGGCATGTGTGAaaca--taaatttcatatttagacTTAGGTTACCTTACTAAAGAGACCGTATAATGACTAAGCATGTATTCTAAACTCTGAAGAAATT--CACAAcattctggtcccaa---gcatttcagataaggtATATGCAATCTGTCTC

a score=7657
s chr3            55504184 332 + 160039680 ATAGATTGAACTGTCCTAATTTGAAAACTTCCAAAGCCAAGTGCAATA-----AAATCCGAAAT--TTGAGTGTCAACACATGTCATCCCAAATAGAAAATTCTGCACCTG--------TGACAGATTGGAGTCA-AATACAGGCATGCTAAAAATACCATGGACAGATATTTTCAGGCTATTTACATAAGGTGCATATGAAACAGTTCAATTTTGTGTTTTGATTTATGTTCCATCCTCAAGATACCGT----------------TATGTGCCC--GAAAATACTGAAAAATTGAAACAAAAATCCAAACCCAAA-------------AGGCATTTTGAGAAAGAGATGGTTAGCCTGACTCAAAG-TGCTGACTTAAA
s HiC_scaffold_1 219325082 372 + 233722169 aCAAATTGAGCGTACCTAATCTGGAAA-TCCAAAAGCCAA----AATAGCCCCAAATCTGCAATGTTTGAGTGCCAAGAA--GACACCACAAGCAGAAAATTACACCCCTGACCTCATGTGAAAGATCACAGGCAGAACTCTGGCACAATAAAAATACTGTGTAAAATCACTTTCAGGCTTTGTGTATAATGAACACAGGAAACAAATGAACTTCATGCTTGGATTTGGGCTCCGTCCTCAAGATATCTCATTTTATttgcatgtgtatgtgcacatgcaaatattctaaaattttaa-agacGTCAAAACCCAAATACTTCCAGCCCCATGAATCTTAGAAAAGGCACAATCACTCTATCACAAAGTTACTcacataaa

a score=7744
s chr3            55504212 265 + 160039680 TTCCAAAGCCAAGTGCAATAAAATCCGAAATTTGAGTGTCAACACATGTCATCCCAAATAGAAAATTCTGCACCT--------GTGACAGATTGGAGTCAAA-TACAGGCATGCTAAAAATACCATGGACAGATATTTTCAGGCTATTTACATAAGGTGCATATGAAACAGTTCAATTTTGTGTTTTGATTTATGTTCCATCCTCAAGATA--CCGTTATGTGCCCGAAAATACTGAAAAATTGAAACAAAAATCCAAACCCAAAAGGCATTTTGA
s HiC_scaffold_1 167548962 269 + 233722169 ttccaaa----aatgtaaaatactccAAAATCTGAGCACCAACA--TGATATCACAGGTGGAAAATTTCACACCTCACCTCACATGATGGATTATAATCAAAACTCAGGCACAGTGAAAATGCTATATAAAATTACTTTGGGGCCATATGTATGAGGTATATATGAAACAAGTGAATTTTAAGTTTAGATTTGTATCCCAGCtccaagatatctcattatgt-tTTGAGACTATTCCAAAAATTCCcccaaaatctgaaatctgaaatctttCTGA

a score=3659
s chr3            55718670 230 + 160039680 TAGGCCATAGGGCCACTGTGCTCAGGAAGAATTAATGCTGGTCTTATAGAGTGAGTACGTTCTC-AAGAC---AACAGGCTGCTATAATAAGGCAGCTCTGCATGTTTGGCCCA----------TCTTACACAGCCATTTTT----CTTTCTTGCCCCTA-----GGAAccctcattacaggctgagtagataaggcc---tgatcttgcatgatcagcttctgaaact--gaagtaaatgaatctgctttttctgta
s HiC_scaffold_1 183680520 252 + 233722169 TAAGTCATGGGGACTCTGTCCTCAGAGATGATTAGTGCTGGTCTCTCAGAGTGAGTGAGTTCCCTCAAACTTGAGCTGGCTCCT------gagtctctctggcttcctgtctcactGTGTAATCTCTTTCCCATGCACTTCCACCACAGTGATGCCCTCATACATGAAAACCTCCCAGGAAGATAAATAGATGGAGCTAGATAATCTTGGACTTTTAGCCTCCAAAACTACAAGATAAacaaacttcttttctttcta

a score=17012
s chr3           56608125 2516 + 160039680 attgaagaaaaccatccaagatctaaaaagggaagttgaaacaattaagaaaaacccaaagagagacaactctggagatagaaaccctagtaaagaaatcagg------aaccatagatgtgagcatcagcaacaga------------atagaagagatgggagagagaatcttctcaggtgcagaaga----ttccatagggaacatggacacaacaataaaagaaaatgcaaaatgcaaaaagatc-ctaacacaaaacatccaagaaatccaggacacaatgagaagaccaaacctatggataataggagtagatgagaatgaagattcacaa--aaagggccagcaaatatcttcaacaaaattatagaagaaaacttcccatacctaaagaaagagatgcccatgaacatacaagaagcctaaaaaactccaaatagactggaccagaaaagaaattcctcactacatgtaataatcagaacaacaaatgcactaaataaagacaaaatattaaaagcag--caaggggaaaaggtcaagtaacatataaaggaaggtctattagaattactccagacttctcaccaaagac-----tatgaaagccagaagatcctgggca-gatgttatacagacactaagagaacataaatgccagcctgggctacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattccatgacaaaaccaaattcacacaatatctttccatgaatccaacctttcaaatgataataacagaaaaacaaaacaaaacaaaacaatacaaGGACGGAAACTACACCATAGATAAAGCAAAAAAGTAATTATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCT-----AACAACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAA-ACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAA----TAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGA----CACTTTAGTAAAGCTCAAAGCACACAAGCACCTCACACAAAA----GTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACA-----AATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGG---AAGGAATAAAGAAAGAAATTA----AAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAA-ACAT-TTCTAAGAGGAAAAGT--CAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAG---GAAGCAAATT-CACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATA-CTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAA-GATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGA-------------AAGACCCAACAAA---CTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTT
s HiC_scaffold_1 89593977 2263 + 233722169 ATTAAGGAAGACATTGCAGGATACAAAAAGCAAATTCAATA---TCAAGCAGAA--------------ATCCTGGAAATGAAAACC----TCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaagaaaagataaacggGA----TTTAGTGGATACAGTAGAACATTCATTTAGTAATCAtggaaaaagaactaaaa----atgaaagattaagaataataacaaatataaaatattt-------------------------------tttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACTAAAGCATAAGCATCTATC--CATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCT-----CATTTAAAGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaat--atcaCCATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAACATCGTAAAAATAGC---AGGTTTATCAACAGAAAACCTAATATTTGAGCTAG------CTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGA--CTGTATT-TCAAaagtaaggggaaaaaaatgttgaGCAAAGAAACT-------CATGACA-------AGTAAGCCAGCattccagaaaatattta------aatatcacaaaGACAATGAGTATAAG------------ACCATG--TAAAGTATAAatttaattgg---------aaaaataaagacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaa--aaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAAT-CTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAA---GATCTG--GAAACAAGCAGGGTTGACTATACTTATATCTGAAAcgtagaatt-------aaaacaaaaatctttaagtGACAAAGAATGCCACTACACATT-GTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGGAAC-ACAAATGCCTGCACATGttatttcataaaacaatttCACTTGA---------AAAG---ACAAACACATCCCCAAAAATATAGTAGGGGACTTCAACAC--TATTTTTATAag----taggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT--------------------------------------TTTAAA-----------GTTCTATTGCATCACAatggaatgaaactagaaattattaggaaaa-aaattacatgaa---------tatGCTGAAATTGAGTTA---------AAATGATACATTTGTAAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaa-----cgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAAAAGCAAG---------------AGTGGTTCCCAAAAAATA-ACCTAATGGTactaaagagaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaa--tcagagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAGagac-----------tcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATC--AGAAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat-taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACT-----------AAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGG-CAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCT

a score=27251
s chr3            56608290 2618 + 160039680 cagaagattccatagggaacatggacacaacaataaaagaaaatgcaaaatgcaaaaagatcctaa---cacaaaacatccaagaaatccaggacacaatgagaaga----ccaaacctatggataataggagtagatgagaatgaagattcacaaaaagggccagcaaatatcttcaacaaaattatagaagaaaacttcccatacctaaagaaagagatgcccatgaacatacaagaagcctaaaaaactccaaatagactggaccagaaaagaaattcctcactacatgtaataatcagaacaacaaatgcactaaataaagacaaaatattaaaagcagcaaggggaaaaggtcaagtaacatataaagga-aggtctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctgggcagatgttatacagacacta-------agagaacataaatgccagcctgggctacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattccatgacaaa----accaaattcacacaatatctttccatgaatccaacctttcaaatgataataacagaaaaacaaaacaaaa--caaaacaat-acaaGGACGGAAACTACACCATAGAT---AAAGCAA-----AAAAGTAATTATT----CAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACT-CAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTA--AAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTA----------------------------------------------------------------------------------------------------TCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGA--AACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGA---ATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAG----CAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAG-ACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC--------AAACTTCAGAC--CAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAAT-TTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgat--catctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatga----taaaagtcttggaaagatcaggaattcaaggccatacctaaacatgataaaagcaatctacagcaaaa
s HiC_scaffold_1 116833951 2484 + 233722169 CAAAAAATATCATGAGGAGtct------aataataaagtaaaa----aattagaaaaagactCAGAGGTCATAAAACAT-------ATTCA----CTTATAAGAAGCTTTTCCAAAGCTAGGTA-------AGTA------ACTCAATATTCA-----AAGGTCATAAAACATATTCACT-------TATAAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaaga-aaaatacaaaaagttgtTACATAAAAAG----AGCAGCA---AAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCACCCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGcct----------tcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATAC------------AATAGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaattaaacaaaaggaaaaaaaacaaaagaattggc-----ATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAAT--ACTGAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagat------taatAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGA-ACAACAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA-----------------CTTCACAG---------------------AACAAAAACT-------------------GCTGTACATATAAGG---------------AAAAACATATCAATACAATT------------------------ACAGTGAGAAA-TTCAATAACCTACTCTCA-AAACTAGCAggtcaacaagacaaaaaattagca-----aaactTATCAGTTAAACAATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTGAAGTTATAAA--------TTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCTGAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAATCC---CAAAAtctatagaaggaaaaaaattat-aaagatgaacCAAACATGAATATAATTAATACTAAAA-AATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAACAGGCAATAGATTACGACAGTAATAAAAACTCTACCAAC-----------AGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaaggaaaactacagCCAACCACCTTCATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGG--gacaaaaaatcttaaaaaatctaatatccattcatgatttttaaaaaccctg--------------------------cTGAAAATAGTAAAAGATGTCTATAATAAAa

a score=17998
s chr3           56608408 1580 + 160039680 aataggagtagatgagaa---tgaagattcacaaaaagggccagcaaatatcttcaacaaaattatag-aagaaaacttcccatacctaaagaaagagatgcccatgaacatacaagaagcctaaaaaactccaaatagactggaccagaaaagaaattcctcactacatgtaataatcagaacaacaaatgcactaaataaagaca--aaatattaaaagcagcaaggggaaaaggtcaagtaacatataaaggaaggtctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctgggcagatgttatacagacactaagagaacataaatgcc--------------agcctgggctacaatacctagcc---------aaagtctcaattaccatagattg------agaaaccaaaatattccatgacaa--------------aaccaaattcacacaatatctt--------------------tccatgaatccaacctttcaaatgataataacagaaaaacaaaaca--------------------aaa----caaaacaatac--aaGGACGGAA-----ACTACACCATAGATAAAGCAAA-----AAAGTAATTAT-----------------TCAACAAA-------CCAAAAAGAAGACAGCC-----------------ACAAGAACAGAATGCCAA--CTCTAACA-------------------ACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGC-------TGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACC--TCACACAAAAGTGGG-AGACTTTAACACACCACTTTCATCAAGGG-------------ACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAAT---------AACAACATAGATCATAGAAAGCCAACA----TTCATG------------------TGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCA--GCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAA
s HiC_scaffold_1 55628325 1747 + 233722169 aataagaataaaagaaaaactggaagatgacTAAAGAgg--cataaaatttatttactgaaataatagcaaaaaaactTTTTGAAGGTAGGGAAATAATTCACTATGTAAATATGAGGTATCTAAAAC-CCCAAAATAGCTAGAGCTAGAACAT---CTGCTCTTGACACTtcctaatcaaaattccaga--aatttaagGAAATCagcaaatattaaaagctgctaaagAAAAGTAGCAAGATACTTATAAAAGCAAGCTTATTAAAATTAtgacagatttctcagcacaaatttTAAAGGCCAAGGGAGCTTAGAATGAAGTTTT-CAAGCCGTAAAAGAAAGCAGTTGTCCAGGAaggggtataactcagtggtacagaacCTGTCTGGTAAGTGGAAGGTCCTGCGTTCTAT---TTGCagtacaaaaagcaaaacaaagcaaatcaagcaagcaagcaaacaaacaaacaaataaaaacgcTTGTCAGGCTAAGCTACTCTAGCCCACAAAATTAACCTCCAAAAC-----TGACAGAAAA-TAAAGCACTTTCATGGACCTTTGTCCCAAAGGTCCCAAAGAATCCCAAAGAACTACATGCCCACTAaaccagaatttcagaaaatatataaagGATTCATACACAGGGAGACCATCAGCACCAAAGAATCTCCCAGAATGTATACAACTGTCTGGAAGAGTAGTTAAATAGAAAAGGAGGGCAAAACCCTGACACAGTAAGCATTGGAAAAATGCTGGAATGATAGTACCCAGTAAATACCTTAC---AATAATTCTCAGTGTCAGTGATCTTAGCTCCACAGTCAACAGACTGAGACTAGCAGATTGgatcaaaaatcaaaatgcaaccatatacacacacatatgtacagtAGATACActttattcaaaaggaaaataatagagtAATTGTGGAAGGCTGGAAAATGATACTCTATGCATCTGGGGCAATAAAGCAAGCAGGAGGAGCTATCTTATTTTCAGACACAACAAGCTTTAAGCTAAAACTTATTAAAGACACAACGATGGATACTACATACTGGTAAAGGGAACAGTTCAAC-AGAAGAGATGATAACAGTAAATATCTGAACTCTAAATGTTGGTATGACCAATGTCATTA---ACACTACTGGACCGCAAATGACAGATAGACACCAGTACAACCATAGTGGGTGGATTTCAGTACACTA-----ACCAATAGATGAAAAGTTAACACAGGTCAAGTAGATGAAAAGTTAACGAGGAAATATCAGAGTTTAATCATACCATTAAGTAAGTGGACTTGACAGAAATCTACAGAGTGTTTTATCCAACAACAGAATG--------------CAGCACGT-----GGACTTTTGCTAAATAGAACATACGTTAGGCCATAAAGCATGCCCAAATACATACCAAATAATGAAGA--ATCGCATGAATTCTATTGGATCACAATGGAGTAAGAgaga-aatcaatggaaaaacaaacaacaaacaaaacaaaacaacaataaaactcCACACAGACATTACACAAACACTGGAGATTAAACAATATGTTACCAAATAACCAATGGATCATAGCAGAAgtcagggaagaaataaaaaagattctaGGATCAATTGACAATGGAAGCACAATATGC-AAAACATAAGGGACTCAGTGAAACAG--TCTAAGTGGGAAGGTTATGGTCCTGAATGCACCCGTTAAAAAATTA-AGCCACcctaaataaataacataatgacACCTGCAgcttttacaaaacaaaagaacccaA

a score=41511
s chr3           56608458 4035 + 160039680 [encoded data, 4526 characters]
s HiC_scaffold_1 55842561 4144 + 233722169 [encoded data, 4526 characters]

a score=58620
s chr3            56608529 4268 + 160039680 [encoded data, 4623 characters]
s HiC_scaffold_1 189257301 4381 + 233722169 [encoded data, 4623 characters]

a score=19408
s chr3           56608580 2047 + 160039680 atcagaacaacaaatgcactaaataaagacaaaatattaaaagcagc-----aaggggaaaaggtcaagtaacatataa----aggaag---------------------------------------gtctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctggg--cagatgttatacagacactaagagaacataaa---------tgccagcctgggctacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattccatgacaaaaccaaattcacacaatatctt------tccatgaat-------ccaacctttcaaatgataataacagaaaaacaaaacaaaacaaaacaat-------acaaGGACGGAAACT---ACACCATAGATA----AAGCAAAA-AAGTAATTATTCAACAAACCAAAAAGAA----GACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAGTGATAGGAAGCAA-CAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATA--GACTAACAGACTG----------------GCTACACAA----ACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAAC---AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAAT-CAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACAT---------------------TCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCA-CACA---AAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCT---CAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTA-AGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTA---AGGCTGAAATCAATCAAGTGGAAACAAGAAGAACT---ATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTC-CTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACC----AAATTTAAA------TCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGT--CATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGC--CCAGGA----------------CCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC---------------------AAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATA
s HiC_scaffold_1  7908966 2093 + 233722169 ACCAAAATGCTAGAGGTCCAACACaaaggcagaattttaaaagctgtcagtgaaaagcaaaaagcaaagcaaaacaaaaccccagaaaacaaaacaactcccCACACCCccatcattttaaaacataaacccATTAGGATTACAGTTAGCTTTTCTACACAGACTTTAAAGACCCAGAGAGCTTGGAGTTCAATGTTT--Caagctctaaaaaaaaaaaaaaaaaccaacttccaacccagacta--atATCCAGGAAAACTGTATGCTAAAGTTGAGGAAGAGATAAGGATATTTCA-AACAAAG------------AATACCTTGAATGACTCATAAACAGCAAAACCAACACTCTAT----TAATTACTCTAGAATTCTTTAGACCAAGACAATGAAACTAATAAAGTCAGAACTTCAGATAGcatgaatacatgaagcaaagtGAGCAgttaaacaaaaagggaaaaataaatgagccTACCAAAGGAAAAGATTGc----------------agtgacagaaaaaaatcaacta-tcTTCAGTAATAAATCTCAGTGCTAATGGCCTCAAATacccagttaaaaaaaatacgGATTGGCAGACtgaacttaaaaaacaaaagcaaaacaacaaaacaaaacccagaaatatattGCATTCAAGGGACTcatttaatacaaaaagaaatgcacagaCTAAACATCAAAGGTTGGAAAACCAGGATCCCCAAAGCAAGTGA-----------------AAGCAGAAATTTTATTATTAGATAAATTCAACTTCAAGTTGAAACTGGCCAGAAGGGGCAAAGATGATTACAACATAttagttaagggaacaattcaacaggaagagatagcaattgtaaatatatatacatcatatataaatatatatatatatacatataaatatatatacatcataaaacaaatactactagACATAAAAGATCAAGTGAACATCAACACAGTCATAGTGTATGACATCAGTACCCCAGGTTTAC-----AATAGAtcaactgaacaaaaaataacaaagttca-----GAACTGAACCACATCTTCAAAACAATGATCTTGATTCATTTCTACAGAATGTTTCATCCAACTGTagcagaacacacattcttctcaggaaaaCGTGCAACTTTCTCCACAGTAGGCCACATA-CTAGTCAAAAAgcttgcttaaataaatacaaaggaatagaAATCATCCCCTTTATATTATTA-ATCATGACACATGAAAATTAGAAtt-gatagcaaaagaaaccatagaaaTTTTGCAAACACctagacataaaataaaacactccAGTACACTGAA---TAGGTCACAAAATAAACCAAGGAATAA-TTAAACAATTGCTAGAAC-CAATTATAGTGCTAGTTCAGCATACCAGAACCTTTGGGGCATAATGACAATAGTCCTAGAGGGGAGTTGATTGCTGCAA-CatttacattagaaaaacagaatgaactcaaataaataacataatgataCACCTCAACATACTAGAA-Aaatggctgggaatatagctcagtgg-----------------caccacaCCTGCCTGGGGTGAGGTC--CCTAGTAAGTACGagcatgagtttgattccaggtacaaaaaaaaaaa---------------aaaaaaaaaaaaaaaaagata------------------ctaaaaaaatCAAGATTAGTACA------AACTTAAACCAGTTTAAGGGGGGGGGCATAA----AGATCacagcaaaaattaatgaaattgatagtAACTATTATGAAAAATTGTTCTTTAACAAActagaaaaacttgaaaaaatggacaaattcctagacgTGTAATCTGAGCCTAGAAGACGTAAAAAAATGCTACAGTCAG--TAATAGTTTGGGCAgtgat--------taaaaaacaacaacaacaacaacaaaaaacagacaaa----------aaaaaaaaaactaccaggAAAGTAAAACATGTATTCCAAAGGcattcaccactgaattctacaaggTCTTCAGA-AGGATTTAGTACCAATACTCTTCAACCTCTTTATTGAAATTGAAGGAGAAGGAAGACATCCAAATTCACTCCTGGAAGCCAGCATCACTCTGATTCCACAGCCAGa-caagacccaactgaaaaaaaaaaaaaaaaacaaaactgtaggccaatctccttaatggaTGTGGTGGCAAAaaca

a score=33866
s chr3            56608764 2634 + 160039680 tacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattccat-gacaaaaccaaattcacacaatatctttccatgaatccaacctttcaaatgataataacagaaaaac--aaaacaaaacaaaacaatacaaGGACGGAAACTACACCATAGA---TAAAGCAAAAAAGTAATTATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAG---------TGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAAT-CAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTC-TCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAG-CACACAAGCACCTCACACAAA---AGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATC--CTGGAAACAGAAACTA--AACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAG--ATCATAGAAAGCCAACATTCATGTGGAAAC-TGAACAACACTCTCCTCAGTGAGACCTTGG-------------TCAAGGAAGGAATAA----------------------------------AGAAAGAAATTAAA-------GACTT---TTTAGAGTTCACTGAAAA-------------------------------------------------------------------------------------------------------------------------------------------------TGAAGCCA------------------------------------CAACATA-----------CTCAAACTTATGGG----------ACACAAT--------------GAAAACATTTCTAAGAGGAAAAGT-CAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCA-AATTCACA--CAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAG-GAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAA-GATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAACAAA-------CTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAAT-TTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatc-ctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaat-agcgta---attcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaaagtcttggaaagatcaggaattcaaggccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcac--tttgtggatgatatgatagtatacataattgaccc-taaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaaattaactcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacccttcacaatag--tcacaaataat--ataaaataccttggtgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctga----agaaagaaattaaagaagttcccagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAA----ATTTT-----GAAGACCACT----AAGTGAGCACTACAAAAGTACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAAC---ATCAAAGAGACTAAAGGAATGAATACATTAATCA------TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCAT---CAATAACAGGTAC--ATTGAAAATTagatgatggaaaacaatacttcatgcaatgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGCTAATGGATAAAGGAACAAGTC--AAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAATACTGCTGCACATAGAGGTCAGATAAACAGC-CACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCAACTGGACA---AAACTATCAGCAAAGA-ATATGAGAGTTGAACTATACCTCTGAACAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattgg----aaaccatGGCAAAGGAATCACAGAATTTTCTCAACCATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatggataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGGAAGTTTGTAATTGTGAGCGC--ccacataaaaac-agaaata--------tagca-----ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaatt-----------aAGAAAAG------------TGGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaaagaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacataca-aagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACCTTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=20694
s chr3            56608862 2360 + 160039680 tttcaaatgataataacagaaaaacaaaacaaaacaaaacaatacaaGGACGGAAACTACACCATAGATAAAGCAAAAAAGTAATTATTCAACAAACC--AAAAAGAAGACAGCCACAAGA----ACAGAATG--CCAACTC-TAACAACAGAAGTGATAGGAAGCAACAA-------TTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACC-CAAAGT-TATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACT-TTAGTAAAGCTC-----AAAGCACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAAT-GGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCAT---GCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCA-AAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAG---AACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAA-----------GAAGAACTATTC----------------------------AAAGAATCAACCAAAGGAGGAGCTTGT-------TCTTTGAGA----------AAATCAACAAGATAGAT------AAACCCTTAG--------------------------------------------------------------------CCAGACTCAC----TAGAG---------------------------------------------------------GACACAGGGACA-------------------GTATCCTAATT---------AACAAAATCAGAAATGAAAAGG-----------------------GAGACATAACAACAGGTCCTGAAG----------AAATC---------CAAAACACCATCAGATC---------------------------CTTCTACAAAAGGAT------------------------------ATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGA----TTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAACAAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCA----ATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagt----aggtttcattcc----agggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaaagtcttggaaagatcagg--aattcaaggccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcac--tttgtggatgatatgatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaaattaactcaaacaagtcaatggcctttct
s HiC_scaffold_1 115153459 2481 + 233722169 ttttaaatg-taataacaAAGGAAACATTTAGAGTAGA----TTCACCAGCGAAGAAGACA--Ggagtcaaagaataaaaataaat---caaaaaatgtgAACAATAAGACAGAGACAAAGTAACAAAGAATGtacaaactaacaacaacaatAGTGATAA-AAGTAATAAACTGTCTTTACCTACCAGTAATGACTTTGAATGTAATTGGACTAAGCTCCCTAGTTAAAGGATGTAGACTG-CTGAATATCTAAAGTAACAAGACCAATTAT-ATATTGCCTATAAGAAAATCATTTCACATGTAAGGACACAAGTAGACTGATGGTGAAGAGATGGAAAATCATATTCTGTGAAAATGAGCAAGAGG-----GCAAGAATAGCTATGCTTACATTAGACACGATGGACTTCAAGTCACAAAAtgtaacaaaaga-caaaaaaagtcacTATAA---CATAAAGGGCACAATTT--------AAATTATACCAATTCTAAATAT--ACGCAATAAACCTTGGAGCA--TATACTAGATAGAGAAAATACTATTAGATCTacgtggagagagagagagtaattCA-ATAATAGTAGGAGATTTGA---CTCCAGTTTCAGAAATGGGCATATTATCCAGAtagaaatcaaa--ggaaaatatcagACCTAA-----ACTGCTGTCCAGATCAGGCCTCAGAAACATTTATAGAATGTGTCACCC-AAAAGTATAGGGTACACCTTCTTCTCATCAGCACGTAGAACTTTTTCCATGATAGGTTACATGTTAGTATTTGAAACAAGtctcaacaaataaaaata-attcaaaatgagacattaagtattttttt-taccTCATTGGAATAAAGCTAATATTCA-CAGTATGAGAAGTTTTCGAAACTATGTAAGCACCTGGATATTGAACAACATATTATTGAACAATGAATGGGTCAAGGAAAGAATTTAAAAGGAGGTTAATAAATCTCTTAAAACAAGTGAAAAGGGAAGCACAACATACCACATCCTATGTGTGACATCACAGGTATTTCTAAGAGAGGTTTATAGCAATAAATGCCTGCatcaaaaaatttacaaatatctca----aatagTTTACCATTGCACctcaagaaaccagaaaaacaatatCAAACTAAGTC---CAGAATTAGTGGAATGAAAGGaataataaatatcagagcagaaatgagtGAAAAAGTGACAAAGATATGTAaggaagagtttttttttaaaggcttttagATAGATTAAAAAGCAAGATTCAAATAAAGTCAGAGGTCATAATGGAGACTTTTAAATTTATGTCACAGATTAACAATAGAGATAGCAAGAGACCCTTAGAAATAACCATATGCTAATGTATTTgtcagttttctgttactgtaatgaACACTTAATATAAAGTTTGTTTGGACTCACATTTTAGAGTGTTTGATCCATCCGGATCTGTTGTTTGTAGGCCTCTGGTAGGGAGCAGGAAATCATGGCAGAAAGACATggtggagcaaaactgcttaCCTCCCcatcagaaactgaaaaaaagtgaaaaaagaaagggctggggtctCCTTAGTCCCTTCAAGGGCATGGCCCCAATGACTGAAGTCTTCCCTGTAATTCTTCGCTTCTCAAGTTACCACCATGTCTCAATACTACCATTCCAAGGATCAAGACTTTAACACAAgggcctttggggaacatttcagatctaaactgTAGTACTCAA-GAAACTGGAAaacccagaagaaatggataaattcatgAATACAAAAAACCTCCCTaaattaaatcat-----aaataaaaagttaaacag----atGATAAATGagattgaaaa--aataatgaaagttctCTT----------------------------------GTAGAGTAGCTCATTGCTGTATTCTGCCAAACATTTAAGGAAGAACCAGTATCAATTCTTCTGAAATTact--acaaaa-----------------------------------------------------------aaatcacagagga-------------------------------GGAAATTGTTCCAAAGTTGATCACACCATCAAA----ACCAGACAGATGCAAGGATAGTTCCAAACATTCA--------GATCAATTAATGAGATACCATTACGATTAGAgttaaaggga-----aaatgaaaaaaaaacta------tgataTCTCATATTAACAAAATCAAGGATAAAAACCTTATGGTCTTTTCCATAGATacataaaaagcatttgataaaattcaat-ccTCTTCATGATAAAA-------------CAAGTCAATTGTAGAATATACCTAAACACGGTAAATACCATATGTGACAAACTCACAGTGGACATCATATAGAACGGGAAAATTCTGAAGGTATTCCTGT--AAGTCTAGAACAAGGAGAGGTTGCccacttttactatttttatttggcATAGTA---------CTAGC---AACAATTAggtaagagaaagaagtaaagtaCTTCCATATTAGAAAGGAGAAAGTAAAACTGTCCTCATTTGCAGGTATCACAATCTTATATAGAA---AACCTGAAAACTTCAATAAAAAA-TGCTAA--CAAATACACAAATGCAATGAAGTTGCAAGATATAAAATCAGCATACGAAAACTGGTAGTGTTTCT

a score=27953
s chr3           56609027 2512 + 160039680 CTTTTCCTTAATATCTCTTAATATCAATG---TACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTG--------GAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAA---ATCTTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCA----CACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGAT--------------------CCTGGAAACAGA----------------------------AACTAA--------------------------------------------------------------------ACAGGGACACAC---------TGAAACTAACAGAAGTTATGAAAC--------------------------------------------AAATGGATCT-AACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAACAAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaaagtcttggaaagatcaggaattcaa-ggccatacctaaacatgataaaagca---atctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcactttgtggatgatatgatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagta---gctggatataaaattaactcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacccttcacaatagtcacaaataatataaaataccttggtgtgactctaactaaggaa---gtgaaagatctgtatg-ataagaacttcaagtctctgaagaaagaaattaaagaagttcccagaagatggaaagatctcccatgctcatggattggaaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcagcaaattagaaagagcaatttgcaaattca
s HiC_scaffold_1 42973449 2236 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTTATTAAATT-----ATAA---GGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatgg----aattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagacaGAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTCA-----GTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGAAAACTTAT-AGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttag-------gaaaacaaaaccaaactaataGGA--------AGGCAATAATAAAA-TTAGAGATGAAATTAATGGAACagactaaaaaacaaa-atgcaaggta------AGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAG---------------------------------------AAAGCGAGAGA------------------AGATCCAA------ATCAAATCTGTTAGCA------------------------------------------------ttgcaggca----------------------------------tggtggc----acatgcctgta-----------------------atca-----------------------------------cagcactggggagaatcatcaca-----------------------------agtttgaggtcatcttgGGCTAT---------------------GTAC------------------TGAATTCaggactagcctga--acta---catagtgagaccta----------------------tcataaaaa--------------------gaaatattattaaagATGTTATAAGTCACACCACTGAAATC------CATGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatat-gcaaatcaataaatacaataatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTAC--AGAAAAGACTTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAACATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggatataa------------------aacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAA----GTTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTA--------AAAATACTCcag---gaatcaacctaatgaacaggtaaaagacctctacacagaaga-----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaaa-atcaatactaaaacTCA

a score=27871
s chr3           56609121 1898 + 160039680 TGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCAC-CTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAA-GGGACAGATCCTGGAAAC----AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATA-TTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGAC-----ACAATGAAAACATTTCTAAGAGGAAAAGTCA--GCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAG---CAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGA-ATCAACCAAAGG--AGGAGCTTGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCC-----AGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACA---------GGTCCT------------------GAAGAAATCCAAAAC----------------------------------ACCATCAGATCCTTCTA---CAAA--------AGGATATACTCAACA-------AAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCC--GTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC---------AAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTC-AATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgat-------aaaagtcttggaaagatcaggaattcaag-gccatacctaaacatgataaaagcaatctacagcaaaacaata----gccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaag
s HiC_scaffold_1 77435741 1920 + 233722169 TGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAA--GATAAAGGGCACCatgtatcaatttaa---aaaatca-ccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG---ACAGACACATTCACA-----GTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTC-----AACCATAAGAGAACCAAGAAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAATATAC-ACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaa----------agaaaac--------acatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaata----agaatgaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttca--------atccctggtaccaaaaaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCA--TCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaaatattttaa------aaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTC------------AGAAATCCCTG---TTAATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGA--ACACATAAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA-----GAGTGAATCAAGA-GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=13630
s chr3           56609164 901 + 160039680 ACCTCAGAGTGAAAGTCTGGAA----AACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTC--CAAATGCAAGGGCAGCCACATTCATTAAAGACACTT--TAGTAAAGCTCAAA-GCACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAAT-------AACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGA-AGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAG--TGGAAACAAGAAGAACT
s HiC_scaffold_1 87165024 858 + 233722169 atcactgagtaaaaatcagagacagaaacaaaattaCATATGATGGGAACATGGCAAGAAGCCAAAGTTGCTATGCTAATTTTACATAAATTGGATTTCAAGACCAAA---CTAGAAGAGGCAAAAAAGGTCACTACCTATTGGTTAAGAGAACAGTTCAACtagaagagataataattat-----tCAGTGTTCACTAAACACTAGAAAGCCCAACTTCAT-AAAACTACTGGATATAAAAGGTCATATAAATGCAAACACTT------AAAATGGGAGACC--------CTACTGTCATAAA----TAGatc-----aaaagaaat--atcagagttgaactaAACCT-----------TTGAATAAATAGGCTTAATAGGTATCTATAGAGTGTTTCACCAAAAAGCAACAGAATGCATATTCTTCTCAAGAGTACATAGGACTATCTCCAAAATAGGCCAAGTGCTAGCCCATAACATTCAcataacaaaatgcaaaattattgaaattattccatg-----tatgagatcatagtgcaatgaaactagaaaacaaTGGGGGAAAACACCAGAAATTATCCAAG---------CATATGAAAATTAAGCAATGACttcttgaataatcaataggttgtagaagaaatcaa-agagaaattaGAG--TTCTTGGAATTAAGTAATAGTGCCAGTACAACATATTGTAACCTGTGGGCCACAATTAAAATAGTGTTTAGGGGGAAGTTTATAACTATGCAcatccacatcagaaaaacagtgaGTCCAAATAAACAGTGTAATGATGTATCTCAggatcatagaaaaaaaaaagaacaaccaaATCTAAAGCTAATACAcataaggaaattataaagatcaggacAAAAACTAATcaagactaaaaacaaaacaaatt

a score=9237
s chr3           56609231 582 + 160039680 CATTCTAATATCGAATAAA-ATCGGCTTCCAACCCAAAGTTATCAAA-AAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTC----AATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCT---CACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTA
s HiC_scaffold_1 25850399 545 + 233722169 CATTTTAGAAGTCAATACACAGCAGATATCAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGACATAAAGAGTCAGATAGACTTGAATATAGCATAGTTGGTAACTTCA-TACCCCAGTCTCACAA-------------------------TAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGC----------GGAATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTA

a score=61159
s chr3           56609411 3136 + 160039680 AAGCACCTCACACAA---AAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAA-CAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATT--CATGTGGAAACTGAACAACACTCTCCT---CAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATG--------AAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTT----AGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGA--TCTAAACAGTCCTATATCCCGTAA-GATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCA-AAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAA--GGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC-------AAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAA-------TACTCAATAAAAT-TTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaa--aaatccaacaccccttcatgataaaagtcttggaaagat----------caggaattca------------------aggccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcac--tttgtggatgatatgatagtatacataattgaccctaaaaattcc-----------------------------------------------------------------------------------------------------accagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaaattaactcaaacaagtcaatggcctttc-tgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacccttcaca----atagtcacaaataatat----aaaataccttggtgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctgaagaaagaaattaaagaagttcccagaagatggaaagatctcccatgctcatggattggaaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcagcaaattagaaagagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaatgataaa---agaacctctggtggaattaccttgcctgacctaaagctgtactacagagcaattgtgataaaaacggcatggtactggtatagt--gacagacaagtagaccagtggaatagaattgaagacccagaaatgaacccacatacctatggtcacttgatctttgataagggagcaaaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcacaactggcggttatcatgtagaagaatatgaattgatccattcttatctccttgtactaaggtcaaatataagtggatcaaggaactccacataaaaccagaggcaccgaaacttatagagggccaagtgggaaaaagcctcgaagatatgggtacagggga--aaaaattcctgaatagaacagcaatggcttgtgctgtaagatcgagaatcaacaaatggga---------cctcataaaattgcaaagcttctgcaaggcaaaagacactgtcaatatgacaaataggccaccaacacattgagaaattatctttaccaatcctaaatcagatagggacaaatatccaatatatataaagaactcaagaaggt-ggactccagaaaatcaaataacccattaaaaaatggggtacacagctaaacaaagaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaaaatgttcagcatccttcatcaccagggaaatgtaaatcaaaacaaccctgagattccaactcacaccagttagaatggttaagatgaaatattcaggtgacagcagatgctggtgagtatgtggagaaagaggaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcagaaaattagacatagtactaccggaggatcccacaatacctctcctgggcatatatccagaaga
s HiC_scaffold_1 72973765 3137 + 233722169 aagagactaACACAATTGAagtgggggaccttaataccccatacTTACAAATgcataaatcaactagacaaaaatatcAACAATGAAATGATACAATTAAACAtagcctgtgaa-caaatgggcttggtGAATGTCTATGGAGTGTTTCGTCACAAAACAGAATTGTATACATTCTTGTCAGCTGCATATAGGACATTCTTCAAAATCAATCACATATCAGGCAACCAAACATGCTTTAGTAAATGTagaggaattgaaatcatcctatgcatattatctgatcatagtgcaatgaaagtGGAAACCAACaccaaagaaaatcacaaaaa--ctacattaaaatatggaaatgaaaGAACACTTTTCTGGGCAATGAaa---gggtcacagagaaaattaaaaacagaattaaatagtgtatatatttaaatgataatGATCATTTAAATGTATAACACACTGAAACTTATGAGACGCAATGGAAGCAGTCCTACAAGGGAACTTCCACATC-------------AGGATAgcagaacaagctcaaataaccaacctaatgttgaacttcaaatttctagcaaaagaacaaatcaa---acccaaagcttgtaggagagaggaaattgtaaaaataagagtagaaattaatgcaatacagactaagaaaacaat--aaaaactcaaTGTATTGaaaa----gttctttgaaagaataaataaaattgataaaccaccATAGAACATgatcaaaaagagg--aaaggaaaaaca----aatccatgcaaatag-aataaaaaggagaaaatcaaaatggattccACAGAAATCAAGGAGATAATTTATACCTACTATGAGAACCTATATTTcaataagatgaaaaacacagaagaaaaggatagattcctagacacaatTAGATTTTCAAAGCTAAATC---accaaatagaaaaattataaataacctgatgtcagccaatgaaattgaaaatgtaatga----------aacctttttaccaataaagaaaagcccaggccctgatggagtcactgttgaattttatcagaaatttagagaa---ctaatGTTACTAATGTTGAAACActttaaataaattgaaacagAGCCAGTACttt--caaaatcattcctggaagcacctATTAACCTATTTCCACAACCAGAGA---ACCCAACCAAAAGAAAGCTacagaccaatcttcctaatgaatacagatttaaaaaaaaaaagtcctcaataagatactggcaaacagaattcacaaac-catcaaaaacGTCATAAACCATGACCCACTATGATTCATCTcagaaatgcaaggatggttcaacatacagaaatcaataaatgta-------atattagCAGAACAAAAGTCAAAacttacatgatcatctcaatagatacagaaaaagcatttgacattaAGTCCAAcacccactcatgataaaaacctacagaaaatagCAGACTTACAGGAAATTGCAAACTTACAGAAAAGGTGggctttacttcaatctgataaatggcatctatgacaaaccaatagctaatatcatattaaatggtca-aaattggaagttttctctctaaaattgagaataagacaaggatgttcgTTGCCACCACTCTTG-------------TGGAAATTTT----ACAGCAAtcggaaaagtaaaagaaagaaaatgaatgaagataggaaaggaagaagttaaattatcatcatttgaaGATGATCTGATATTCTttatagaagatcccaaaacttTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA----------------------------ATTCAGTAGTATgacaggatacaaagtcaacactcaaaactcagtcATTATTCTTGTACACCAACAACCAACtctcagaaagagaaattaaggaaaacacaTCCTTAATAGCATATTATTAT-AATAGCATccagaaattattat----ttaatctaacaaaggatgtgaaagatctatacagtgaaaaccacagtaccctaaaaaaggagattgaagaagatatcagaaaatagaaagatatcgcTTGCTCttaga-cagaaaaacaaaca--gtgaaaatggTCCTACtctcaaaactgctatacagatttcaTTCAATCACAGTCAAAATACCATGAAtgtatctcacagatctagagaaaacatatgaaaagttcatctggaaccagaagaaactgaGAATAGCAAGAGTATTTATGTGTaacaaagacaaaacagcagGC-AAGGCACAATTGCAGacc-aaaattatactacaaagctactctgcaaaaatcagcattgtattggcaaaacaaaacaggcctGAAGAACAGTGGAACAGaagagaagatgcagacacaactcctaacacactcaactaccttatttCTGACacaggagccaaacatgttccctggaaggaAGATACTCTCtataataaatggtactggaaaaactggttttccatatgccaaagaatAAATCTGGACTCATGTTTCTC-ACATGCATCAAACtaacatcaaaatggatcaaacatctaaacattaaaacagacaTTCTTTATTTActtgaagagaaaataggtagaaatcttgaaaaca----tacaGGTCACCAGGAACTCCAGACTACaaaggaaa-------tactacaa-----agaatcaacaaataagatcacaacttcttaaaaaaaaaaaaaaacctttg--acacaaaagaaatcaccaaca-gatgAAAAGAtatccaacagaatgaaaaattatAGCCACTTGTCCT---TCAGACAAGGagttatatctagaatataaaatgaactgaaaattatCAGGCcacctaaattcaaagacctaatctaAAAATG--------------------------TACCt---caatac---------------------acacaaaaaagttca-------ttgtcactcaagagatgcaaatgaaaacaacatggcattttcatctcactccagaacgaatggctgtcatcaaaaaatcagtgaataacAAAT-ctgatgaggctgtggggaaaaaggaacccttttgcACTGTTAATGcaattgtagactggtgcaaccactataaAAATCAATATCAAGATTCTTTACAAAACTAGAATTACAGGTCCGGTTTGatgcagctattccccttctgagtataatgtcagaaga

a score=9834
s chr3           56609427 682 + 160039680 AGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGAC-----ACACTGAAACTAACAGAAGTTATGAAAC--AAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTC-ACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAA-------ACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACA--AGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAAT
s HiC_scaffold_1 96150038 636 + 233722169 agtgGGGGACTTTATTATTCCACTTTTACAA----------TTAGGAACCAAAGATAAAGCAAGAAATATCAGCGTTGAAAC-----------ATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATAT-CTTAGGCTTTAAgcatacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTAC---ATAAACAATAGATCACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGTTTACATCTGTAAATGaa-----------------catacagaaagaa--tagaGGGATCCCA----AATAACTTAAGGATGACTCATGAACTCCTAGAAAGTTACAAA--AAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCA-AACAATATGAGGgactaatgaatcaaagag--tggaCTCTGAAAAAGT

a score=10571
s chr3           56609749 876 + 160039680 TGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAA------------TTCACACAAGAGGGGTAG--ACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAG-----------GAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGC--AGTC---ATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAA-GATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAACAAA-------------CTTCAGACCAATTTCCCTT---------ATGAAAATCAATGCAAAAA
s HiC_scaffold_1 77585700 843 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaATCT-GTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCAT----------------------------GACAGTAAATGCCtata-tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGA---ACAGCAAT-------AAACAa-aagagacatttaaaaaataaaatgaaaatgtcagcGAAACAGAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgata-----aaaagtaacaaagctgaatcaggataaatagcatttt----------------taaaaagcctaacaCT-GGTTGATTTCACTGAATGT--TACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGACAATTTAATAC-----TCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttttttagaggaaaaaaagcaacagaaaaa

a score=30606
s chr3            56609749 1424 + 160039680 TGGAAACTGAACAACACTCTCCT---CAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCA--GCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACAC----TAGCAGCTTGACAAC--ACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTA--GGGCAGT---------GTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACT-CTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAACAAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTA-CTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaaagtcttggaaagatcaggaattcaaggccatacctaaacatgataaaagcaatctacagcaaaa-caatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatca----ctttgtggatgatatgatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttca
s HiC_scaffold_1 167392384 1357 + 233722169 tagaaatcaaacaatactcTCTTGAATAATGAGATCTTGGC------------------AGAAATTAAG---TTCTTAGAATCAAATGATTATGTAAATAAAACGTACTAGAACtaatgagacacaatgaaagctgtcctaagagagaagtttatagctgtgaataagcacatcagaaaaacagaatgcgttcaaatgaaataaacttttgGTTATTTCTATCTCAAGACcgtagaaaaacaagaacaacccAAACCCAAAGATAGCATCAGCAAGGCAATTATAAAGACTAAG-Cagtgataaataaaattgagcctaaaa-aatta--caaagaatcaatgacttGGACAGCTGGTGCTttgaaacactaaacaaaatagacaaactcttAACCAATCGTATCGAAACcaaaaaagac-----ccaaatcaatacaatgagaaatggaaaaggtgaaatcacaaaagACTGTGCTAAAATCTAGACTATCATGGAAAACTACTTTGAGAATCTgtactaaaaaa----ggaaaattcagaagaaattgaTAGGTATCTAAATACATATGaa----caaagctcaatcaagaagatataaaaatcctgactgATTTAACATctgtcaa----tgaaactgaaaattaaaaagctactaact-----------aagaaaagcccaggtcttgacaAAATCACTTGGCAAATTCTACTAAATTCTACTAAAACTTTGGAGAAGCTCTAACACCAGTACTCTTCAAACTGTTTAACAAAATCGAAAGGGAA-CTACTACTTCCAAACTAATTCCCAGAAAAAACCATTAACCTGATTCccaaaccagaaaaggacccaaccaG----AAACCAAGCTCTTCAATGAACAtttatgcaaaaatcttcaataagatattagcaaacagaatgcaacaaatcatcaaaaagatcat----------aaagCAATCACca----aaggatgcagggatggtccaacacatgcaaatcaataaatataacctaccacacaaacagaagcaaagacaaaagtcac-------tctcaagagatgcagaaaaagcacttgacaaaatccaacatccattcataatAACAATCCTGAAGTCA-CTGTACAGaaagtctttatttcaatctgttcAAACCTATTCATGACAAAACCAAAAGTCATC----TATTGAGTGAAGAGAAGCTAAAGTTTATTCTG-TAAGATCAGGAATGAGACAAAGATGTCAACTGTCAACACtactgttcaatatagttctcaaaaTGCTGGTCAGAGCAATCACagtagagaaggaaataaaagggatat-tacaggaaaataagaaattaaattattaaaatatttgcagatgacatgatcctctaca-----gatccccaaaacttcaccaaaaaactccta-----gaaaaacaagTTCA

a score=13239
s chr3           56691631 529 + 160039680 TATACAGCCTATCTACATTT---------TCCAATATACCCTTGCTAAGTAAAAATTACAG-TAAACGTTGTTTCTTACCAAACACTGTACTAAATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATG-AACTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTA-GAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACAATAGAGG---TAACCTCAAATAAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAA--AGGAAGCAAATTAAGATC
s HiC_scaffold_1 88298609 528 + 233722169 TGtaaagcttttttaaatttagttatgTCTTTTAGAAATTCCTGTTAAATAGTAATTGCAGGTGGCTGTTGTTTTGAGTATGATCCTGCATGGGTCCCCAAGAga-gaaagctaaaaataaaaatggagtcaCTCATGCTAAAATTTCATATCACCAAACTATAAGTGAA--GTGTTTTTGAGCTTCCTAGGAATCAGAAACATAAGAGAAGATAGGAAAATTCCCTAAACCAA------TGAATTGGCATGACAGTGAAGTTTCCTCT--TTCAATCCTTGCATTTTTGAAACCTTAGTCTGACATAACATGATGTTATC----CAATCATGTTTCTATTATTCTGTCCCTTTGTTTTCACCTTATaataaaagta-ctttaaaatgaCTAATCTGCTTTTcact--ctttatttctgttttcttccatctctctctgtgtataAAAACATCCTTTTCTGCTCAGCCAGTCAGGGCACATATCACATATTATGGAATGAAGAGTTGTCTGATTCTAGAATTGCAATCATAAAGTCATTCAAGATC

a score=6280
s chr3            56691664 235 + 160039680 TGCTAAGTAAAAATTACAGTAAACGTTGTTTCTTACCAAACACTGTACTAAATCCCAACAGAC---TAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATG-AACTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCT
s HiC_scaffold_1 163450803 219 + 233722169 TGTTAGATAAAAATTACTGAAAGCTGTGGTCTAGACTGGGCTCC------AGCCCTGGGAGACAAATGAGACTAAAATTCCAAGTGGAGTCACCCACGCAAAAGTTCCATGTCACCAAACTGAAACTGAATTGT-TATCTGAGCTTTCGAGAA------ACCAGAAGAATGAAAGTCAAATTCC-CAAACAGGC------TGATCAGCATGATGATGAAGCTTCCTCTGCTTTAACTCT

a score=16384
s chr3           56691664 505 + 160039680 TGCTAAGTAAAAATTACAGTAAAC-GTTGTTTCTTACCAAA-CACTGTACTAAATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAA-CTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACAATAGAGGTAACCTCAAATAAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCC-TTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTA-TTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttggacta
s HiC_scaffold_1 59514267 493 + 233722169 tgttaaataaaaattacaggaaGCTATTGCTTCGGACTAAAATTCTGCACTGGACCCCAGCAAGCCagg-ttaaaaatcaaaatggagtcaTTCCTGCTAAAATTCTACATCGTAAAGCTGAAATTAAGCTGTTTATCTGGACTTCTGGGACACTAGGATTAGAGAGATAATAGGCACATTTCCCAAACAGGACAGTTTCGGTCTGCATGATAATGAGGCCCTCTTGGCTTTGATGCTga-acaaaagaaataacaggacATAAAGTGACCGTAACTGATAAGttatttccttcttgttttaTATCCTTATCCCCATCTT-CGAGGAAAATAACTTTGGAGAGACCCATTCA----CTCTTGGATTTTGTTTCGGCTTTCttcagcccaactgtgtctgTGAAATCAGGctcttctgctctgttctttggaacattaattacatttttatggaATGAAGGGT----------TAGAATCAataataaagccaattaagatctGTAAATTA

a score=15889
s chr3           56691670 562 + 160039680 GTAAAAATTACAGTAAAC-GTTGTTTCTTA-CCAAAC-ACTGTACTAAATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAA-CTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACA-----ATAGAGGTAACCTCAAATAAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATT-TCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttggactaaatgtccccaaaggctcctgtgttgaaactttggtgtta-agataatggagatgtta---ggaggtg
s HiC_scaffold_1 83819963 547 + 233722169 GTTAAAATTACAGTAGACCACTGTTTTTGAACTAAACTCCTGCCCTGGGCACCAACAGGC-AGggctaaaaatcaaaatagagtcaCTCACACTGAAGTTCCACATCACCAGCCTGAAACTAAGCTGTTTATCTGACTTTCCAAGAAATCAGGATTAGAGAGATAGCAGCCAAATTCGCCAAACAGGCCCATTTCAATTGACACGAT----AAAGTCCTTCTGCAGTAAccctaatacacacacacaaaagtgacCTGAA----------GTTAGCTAATcaattatgtttctgttg----------catgcCCTGCTTTACAGGGG----AGTTTTGAAAtaattgcttttttgtatttttatattgttgtCTGTTCCCTTCAGTCATTTGCTGTCCATAAAATGAAACTCTTGTGCTCAGCTCAATGGCACACTCATTCTAGTTTATGAAATGAAGCATAGCTTGATTCTAGAACCAAAAGTAAAGCCAAAGacaacttttaaattaaatttttgtaactttttgtcCTTTGAAACTTGTATGCTACAAAGGATAGAAGTACAAAAGGGAGGTG

a score=10450
s chr3           56691672 501 + 160039680 AAAAATTACAGTAAACG-TTGTTTCTTACCAAACA-CTGTACTAAATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAACTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAA----CAGCTGAATTTTGCAAACAGGCCAGTTTCAA-TTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACAATAGAGGTAACCTCAAATAAACTGT-TGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTT-AGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttggactaaatg
s HiC_scaffold_1  3787354 477 + 233722169 AAAAATCACAAGAGCCCCTTGTTTTAGACAAAGCTTCTGCATGAGGCCCCAGCAGACcaca--ctaaaattgaaatggagtTACTCAGGCCAAAGGTACT-----CCAAAAGCAGCT-------GTGTCTGACATGTGTAGAAATCAGggttagagagaaagaaagcagcaaCATTTCCCAAACAGACCAGTTGCAAATGGGCACCATAATGC--TTTTTCTGCCTTCATCCCTTTCACAAAAAACAGGACCTAGAAGTAACTTCATGGCAGTTAATCAGTTGTTTTCCTATTGTTCTGTCCCCCTGACCCAGCCTTCCAAGGAAAGTAACTTCAAAATGACCAATCCACTTTTGTTAT---TTGTTTCAGCTTTCATCAAGCTGTTTTCTTCCCATTAAAGCAACTTCTGCTG----------GGCCAGCCAGA----ACCTTAGAAAATGTAGTGTTGCCTGATTTTAGAGCTTTTGAAACAGCCAACTAAGATCTTAACACTAAATG

a score=5789
s chr3           56691740 174 + 160039680 CAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAA-CTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACAATAGAGGTA
s HiC_scaffold_1 70824129 166 + 233722169 cAAAATGGAGTCTCTA----CAAGGTTCCAA--CACAAAACTGAAGCTAAATTGTGTAACCAATCTTCCAAAGAATCAAGATTAAAGAAGTAACAGCCTAATTTCCTAAACAGATAGGTTTCAATTAATATGATAACGATGTTTTTCTCTGTATACTCTTTA---AATAGAAGTA

a score=7350
s chr3            56691787 362 + 160039680 AAACTGTG-TATCTGACCTTCTGAGAAAATTGGATTA--GAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACAATAGAGGTAACCTCAAATAAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGC
s HiC_scaffold_1 206461481 313 + 233722169 AAACTGTTCTATCCGACCTTCTCAGAAACCAGGAGAAATGGGAGACGACAAGGGCATTTCCCAAAT-GGACAGTTTCTACTG---------------------------------------------GCAGCCCGAAGTGGCCCAATATTAATCAATCAGTTACCAATCTGTTCTTCCATCTC-CTGTCCCTTCTT-AGGAGGAAAGTTGCTTTTAGATGACCAATTAGCTTTGGGTTT---TGGTTCCTGCTT-TCTTCGGCCTTTTCTGTCTGTGAAACCAACCTCCTCTGCTCAACTGGTTGGAATACTTACTCTAGATTATAGATTGAAGTGTTGCCCAGTTCTAGAATTGAACATAAAGC

a score=5798
s chr3           56692000 156 + 160039680 AATGACC-CTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAA
s HiC_scaffold_1 48784581 146 + 233722169 AATGACCTCTTTCTGGTCTCT--------GTTTCTGCTTGTTTCAGTTCTTCTCCGTGTATAAAATCAACTTCTTCAGCTCAGGTCATCAAGGCAT-TATTCTATTTTATGCAATAAAGTACTGTCCAATTCTAGAAT--CAAAATAAGTCAATAAA

a score=8412
s chr3           56828463 111 + 160039680 ATGGAATAATGATCTCTTCTTTCTTTCTACATTTTGCACAAACTTCGAGTTCACAGGCACGTGGTCTACACATTATGTGGTAAGAGTCCTTTACTGTCTTTTGTAAACATT
s HiC_scaffold_1 58212394 111 + 233722169 ACGGAATAAcaatgtcttctttctttccacattttgcaCAAACTTCAAGTTCATAAGCACATGGTCTACACATAATGTGGTAAGAATCCTTCACAGTCTTCTGTAAACATT

a score=8585
s chr3           56828578 110 + 160039680 CATTTCTTAGGCTTTGACAGTGGCTTGTATTTGCTGTATTTTACAAGCCATTCAAGAACTTCTTTGCAGCATTGACATACTCCATCATGACGTTTTGCATTAATTTTCTT
s HiC_scaffold_1 58226150 110 + 233722169 CATTTTTTAGGCTTTGATAATGGTTTATATTTGCTGTATTTTACCCGCCATTCAAGAACTTCTTTACAGCGCTGACATACTCCATCATGAAGTTTTgcattgattttctt

a score=7607
s chr3           56828685 202 + 160039680 CTTGGTCTGAACACTCTTATCAAACTTGTCATTTTTGAAGGTGAACGTACTCTGGTGAGTCTGAGGCCAGGATCGAGTCATGTTTCCTTTCTGGGAACTCATCTCC-AAATCTCAAGCACCATAAGTCAGTGCAACCTTTAAGTTACAGGAAAGGGTAAAGAAGTTACTGCCCCAGACTGAGACTATCAAC-AGTGATCCAGAA
s HiC_scaffold_1 58258600 203 + 233722169 CTTCGTCTGAACAGTCTTATCAAACTTGTCATTTTTGAAGCTAAATGTATTCTGGTGCTTCTGAGGCCTGGAACGAGCCACATTGCCTTTCTGGGAGCTCATCACCGAAATCGCTACCACCTCGCACCAGGGGAAGTGAAAAAGTCGCAGAGAAGACGGAGGAGCAGATTCCCTGTGCGGA-AGTGTCAACGGGTGACCCGGAA

a score=9922
s chr3            57045515 201 + 160039680 GTAGCAAAAGACAGATTAAGAAAGGAGAGTTTATACCCTGGCAATGAGCAAAGAGACACTTTGTTGGTGTTGGTGTTCTTGTATCAGTCAGGGACAGAGCAGATGGCAGTCCTTCAGTCATCCTAGTTTGGTGCCTGGCTTGGTGGCCAAAGCTGTCTTATGTCTGAGTCTTGTaaaacaaaataaaacaaaacaaaataa
s HiC_scaffold_1 195809899 196 + 233722169 gcagtggaagacagaaaaagcaaaaagaccc----CCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCT-GTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggcaataa

a score=8017
s chr3            57054150 132 + 160039680 CTGTCCCTAGAGGTGTTGCAGGTGTAGCTGCTGTGACACATATGAGTCAGGAGGTGGCAGAGAGAAGAGAGGCTATG--TAGGCTCAGTGTTCTGAGCTGTGAATTTCTGAATGATTAGTTGCCTAACACTCCC
s HiC_scaffold_1 194511548 134 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=7276
s chr3           57258383 181 + 160039680 gttattctagagaactctgactaatacaGTTACTATACAGAAATTAACAAGCATACTGGACTAGAAACCTTAAACTTAAT--------ATTTGTCTGAGGGACACACATTGTATTAAATATGCAAGGTCTTATCTCTATAGGTTTGACTGTTGAAACTAATAAGTTATTCTCCAAATAGTGATGAAGAA
s HiC_scaffold_1 20294798 187 + 233722169 GTTATTCCAGTTTACTGTG--TTGCATTGGCATTGTACAGAAATTAACAGCCATATTGGTCTGGAAATGTtacacttaatttttttccatttgtacagGGGTAATGCACTGTATTAAATACATAAGGTCTTAGCTACATGGGTTTGATTACAGAAACTAATAAAGTTCtctataaataatgaaaaaaaa

a score=5849
s chr3           57258411 148 + 160039680 GTTACTATACAGAAATTAACAAGCATACTGGACTAGAAACC-TTAAAC--TTAATATTTGTCTGAGGGACACACATTGTATTAAATATGCAAGGTCTTATCTCTATAGGTTTGACTGTTGAAACTAATAAGTTATTCTCCAA--ATAGTGATG
s HiC_scaffold_1 21126662 153 + 233722169 GCCACTGTACTGAAATTAACAGCCATGCTGGtctaaaaaatgttaaatgttttccatttgtaCAGGGTTAACATACTGTATTAATTATGTAAGGTCTTATCTATGTGAGTTCAGTTACCGAAACCAATAAAGTATTCTCTAATGACAATAATG

a score=7945
s chr3            57258417 167 + 160039680 ATACAGAAATTAACAAGCATACTGGACTAGAAACCTTAAACTTAAT--------ATTTGTCTGAGGGACACACATTGTATTAAATATGCAAGGTCTTATCTCTATAGGTTTGACTGTTGAAACTAATAAGTTATTCTCCAAATAGTGATGAAGAACAAGA----AAAGAGCATAATAAA
s HiC_scaffold_1 106433462 179 + 233722169 ATACAGAAATTAACAGCCATATTGGTCTAGAAAcgttaaacttaattttttttcatttgtacaggggtaaTGCACTATATTAAATACGTAAGGTCTTATCTACGTGGGTTTGATTGCAGAAACTAATAAAgtattctctaaataaaaaaaatggataTGATTTGGAGGGACTTAGTAAA

a score=4430
s chr3            57362354 133 + 160039680 CACCACGCCCTACTCATACTCAGAACTGACCCCAGAGCAGAG---GGAGCTGTCTGACATCGCTCACCAAATTGTGGCTCCAGGCAAGGGCATCCTGGCTACAGACGAGTCCACTGGAAGCATTGATAAGCCCCTG
s HiC_scaffold_1 171090794 136 + 233722169 CACCATGGCGCATCGGTTTCCAGCCCTCACCCCAGAACAGAAAAAGGAGCTCTCAGAAATCGCCCAACGCATTGTAGCGGATGGAAAGGGCATCCTGGCTGCAGATGAATCTGTAGGTAAGTCTGAAAAACAGCTG

a score=7580
s chr3            57362735 163 + 160039680 AGATCTGGATGACCTGTTTGACCGCTGTGCCCAGTATAAGAAGGATGGAGCCAACTTTGCCAAGTGGCGCTGTGTATTAAAGATTGGGGAACATACTCCCTTAGCCCTTGCCATCATGGAAAATGCCAATGTTCTGACCCGTTATGCCAGCATCTGCCAGCAG
s HiC_scaffold_1 171093553 163 + 233722169 AGGGCTCGATGGCCTCTCCGAGCGCTGTGCTCAGTACAAGAAAGACGGGTGTGACTTTGGAAAGTGGCGTGCTGTGCTGAGGATTGCCGACCAGTGTCCCTCCAGCCTTGCTATTCAGGAAAACGCCAATGCTCTGGCTCGCTATGCCAGTATTTGTCAACAG

a score=8477
s chr3            57362979 178 + 160039680 AGGTACTGGCGGCTGTCTACAAGGCTCTGAGCGACCACCATGTCTATCTGGAAGGCACATTTTTGAAGCCCAACGTGGTCACCCCTGGCCATGCTTGCACCCAGAAATTTTCCAATGAGGAGATTGCCATGGCAACGGTCACAGCACTTCGTTGCATAGTGCCCCCTGCAGTCCCTGG
s HiC_scaffold_1 171095405 178 + 233722169 AGGTTCTGGCTGCTGTCTACAAGGCCCTGAATGACCATCATGTTTACCTAGAGGGCACCCTGCTAAAGCCCAACATGGTGACTGCTGGACATGCCTGTACCAAAAAGTACACACCAGAGCAAGTGGCTATGGCTACTGTCACAGCTCTTTACCGTACGGTTCCCGCAGCTGTTCCTGG

a score=6293
s chr3            57363164 199 + 160039680 TTCCTGTCTGGAGGGCAGAGTGAGGAAGAGGCATCCATCAACCTCAAGGCTATCAACAAGTGTCCCCTACTGAAGCAATGGGCCTTGACTTTCTCCTAGTGCCGAGCCCTGTAGGCCTCTGCTCTAAAGACCTGGGGTGGGAAGAAGGAGAACCTGAAGAGTTCAGGAGCCCCAGAGGAGTACATCAAGTGAGCCCTGG
s HiC_scaffold_1 171095965 193 + 233722169 TTTTTGTCTGGGGGCATGAGTGAAGAGGATGCAACTCTCAACCTCAATGCAATCAACCTTTGCCCTCTTCCAAAGCCCTGGAAACTAAGTTTCTCTTACGGGCGGGCCCTGCAGGCCAGTGCACTGGCTGCCTGGGGTGGCAAGGCTGCAAACAAGAAG------GCAACACAGGAGGCGTTCATGAAAAGGGCTGTGG

a score=3755
s chr3            57445310 88 + 160039680 TCCCAGCAGCCTATTCAGCTATGAACTCACCATTGGATTCATCCATTGGT--GGTTAGCACCCTCAAAAAAATCCATTCACCTCTCAACA
s HiC_scaffold_1 121146885 87 + 233722169 TTCTAGTAGCCCATTCAGTTATGCACTCACCAATGGATTAACCCATTGATAGAGTTAGTACCTTC---ATGATGCAATAACTTCCCATCA

a score=9937
s chr3            57528346 391 + 160039680 TAAAGAGGTGGCAGGACTT--GACGCTAATTTACCTTGCACATGTAAAGTACACTTTCCTGACCCAAACAAGCTCCATTGCTTTCTGCTGACTATAAGCCCAGGTGAGGGTTACTACAGGGGTGGAAAATTTCAGTTTGAAACTGAAGGCCCCATTGCCTA-CAACATGGTGCCTCCCAAGGTGAAATGCTTGGCTGAAATCTGGCACCCCAACATCACAGAAACAGGGGAAATATGTCTAAGTTTACTAAGAGGATATTCAATTGATGGCACTGGCTGGGGTCCCACTAGAATGTTAAAGGATGTTGTTTGAGGATTGAACTATTTACTGATCTCTTGAATTTTGATGATCCACTGATT--ATTGAAGCTGCAGAACACCATTTGCGGGACAAGG
s HiC_scaffold_1 117130821 332 + 233722169 TAACAAGTCGGAAAGACTGCAGAAGCTCACGTAAACTGTACATGCAAAATCCACTTTCTAAACCAA-------------------TCTTAACTATGAGCTGAG---------ACTAAA------------------TTGAAACCAAAATTCCCAATGCTTATCCACTCAGTACCTCCCAAAGTGAAATGTTTGACTGAAATCTTGAATTCCATCATCACACAGACAAATGAGATATACCT--GTTTGCTAAACAAACTTGAAAACAATGACACTGGCTGAGTTTCCTTCAGAACATTTAAGGATGTTATTTGGAGACTA----------------TTTgaattttgataatttgtttcTTACACTGAAGCTGCAGAGCAGCGTTTGCAAGGGAAGG

a score=15900
s chr3            57646373 505 + 160039680 AATTTTATTTTCAAATTTTGATCAAGAGCAAAGGAAATAAAGTAGATAAAAAAAATATCCAAGTCCGAAGAGT---------CCACAGAA---ATCAGCAGTAT-TGATCCATCTTAGTTGGTGCATC-CTCTTTACACACTTGAAGTAAAAAATGCTTTCCAACCTG-CAAGAAGCTGACCGCATTCAGCACCAAAACGGAGCTGCGGCTCAGCTTCTGATCAAGATTTCAACATCCTG-AGCAGGGAAAGA----------------------------------------AACTCCACGAA-----TCCAGACGTACCACTGCCACGCCAGTGTCTCCAACTGGAAGGAAGGAAACCTCAGAGC------TACTTGATGCTGCGGACTACTCTCCTGCAGTGGTTTGTTTTCATTTCCTCTAACGCCTGCTCCAGCTGCTGAACCAAATGAAGCAGGGTAGCTGG-GTCTGTCTGCAAGAAATGAGTGCTGTGGTCGCCATTCTGATCGAGGTGCAGCTTTATGGTCACTGCTGGCTTAATCTGTTGCCGGAGACTTCTGCTTGCAAGCT
s HiC_scaffold_1 212420939 562 + 233722169 aattttattttcaaagttcgATTGATAAGgaggaaaataa--taaagcagaCAAGTACCAAAAACAGGATAATGATTCATATACACACAAGGTATGAACACCATATGCTCCTTTCTAGCCAATTTAACTCTACTCAcacatttaaaatacacagtacattTCAATCTGTCAAGAAGCTGAGCACATTTAGCACAAGAAAGAAACTGTACTTTAGCTTCTGATCATTACCCCGAGATCCTGGAACAGTAAAAGATGGAATCTCGATACTTATTACCATCCAGTAACaaaaaattaactttgaaaaGTAATTCCTGA-GTATCACCGATTCACACATGATTT-------AAGGATTAAAATCTTAGAGCGGGTTCTACTTGATGTCCCGGACCACTCTCCTGCGGTGGTTTGTGTTCATCTCCTCCAGTGCATGCTCCACCTACTGCACtaaaggaagcagga-agcaggtgTCCGTCTGCAGAACTTTGGTGTTGTGATCTCCATTGTGATTAAGGTGAAGCCTGAAAGTTGCCGCCGGTTTAATCTGCTCCCAGAGACTTCTGCTTGCAAGCT

a score=11285
s chr3            57650041 193 + 160039680 CTGTACATCTAGCCGCCACTCAAGACTATGGTAACTGGGAAGACGAGGTGCTAACTCGTTCAGAATAGTTCTGATCTCCTTTCTGTTGTCCAGGTAGAGCTGAAGCAATAATTTGTTTAGTTCTTCAGAGAATCCCAGAACAAAGACAGAGTCTTGGAAATCCAGTTCAGAAATCTAAAGGTAAATTGAGTTC
s HiC_scaffold_1 212421499 188 + 233722169 CTGTATGCCTAGTCGCCATTCAAGGCTATAGTAAGTGGGAAGGTCAG-TGCCAGTTCACTTAGAGTAGTTCTAATGTCCTTTCTCTTGTTCAGATGAAGCTGAAGCAATAATTTGTTTAATTCTTCAGAgaatcccaaaacaaaaac--agtcttGGAAATCCAGTTCAGATATTATAAGCT--TTTGAGTTC

a score=5403
s chr3            57651574 133 + 160039680 GCACTAACTTAC-CTGCAGTGTCCACTTGCGGCAGGAAGGCCAAGTGCTCCTTGTGCTCCTCGGACAAATCCAGCAGCATTTTAGCGGCTCTTCAGACTTTGCCACCCGGCGCCGGCCCCGCCCTCACCACTTC
s HiC_scaffold_1 212421730 124 + 233722169 GCACTGAGTTTTGCTGTGCTGTCCACTTGAGGCAGGAAAGCCAGGCACTCCTTATGCTCCTGCGACAAACCCAGCAGCACCTTCTCTGC---CCAGCCAGTTCCACCC-------ACCCCGCCCTCACCAGTCC

a score=26717
s chr3           57765806  867 + 160039680 tttttgttttttttt---------------AATTTTGTAATTATATTTATATACAGAAAACTTAGT-GTACATTTAACCCAATTTAGTGGCAAGTTCTTTAGCCTTTGCTTTTTCCAGCTTGGAA-ATGCGAGCCACAGACTTAGGACCCAGGGAGTTGCCTCCCCAGTGGCGACAGATCTCGTCATATCTGTCATTATAATTGGTCCTAATAGCTTCCACCCGCTTAGCCAGAGCACCCTTGTC-----TTAACCTGTGTGAAGGCAACAGTGGTGCATGTCTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTTCCCTTGATGATGCAGTAGGGTACCCCCATCTTTCGACACAGGGCAGGTAGGAAAACCACCAGCTCAGTGGGGTCTACACCATGGGCAATCACCACCAACTGAGCCTTCTTGTTCTCCA----CCAAGGT-------------------------------GGTGACTGTATTGA-----CTCCTGCTCAG----------------------------------------AGGACAGGTGGCCTCTTAGTTGGGACGTCGCCTTTGCCAGCAGCTTTCTTCTCAGCAC-GAGCCA--------GTAGCC--------------------TCTGCTTCTTCTCTTTCTTTG--TCTCTGGCCTGTACTT-----------------GTGGGCAAGCTTAAGCAGCTG--AGTAGCTG-------------------------------------------TCTGCCTG--------------------TCCAGC-------------------------------------------------------------------------GCCTGGGTGA--------------------ACTGGTTAATGGCAGGAGGGACTTTGAGCCGCTTGTAGAGGATGGCTCTTTGCCGCTGCAGCCTGATGTAGTGGGGCCATTTGACGAAGCGCGTTAAATCTCTTTTGGGCTGGATGTCCTGTCCAATGCCGAAGTTCTTGGGCCTC-TCTCGAACAGAGGGTTGACCACCTTCTTGGCCTCCTGCTTCTTGACGACGGCGGGGGCCGGGGCCACCTTCTTCCCC-TGGCCTTCTTCCCTTTGGGCATCTTGCTCGGCTACTGGAG
s HiC_scaffold_1 62307205 1154 + 233722169 tccttatttttttttctccagattaaggacaattt----gttatttttatgtacaGAAAACTCAGGAGTTCACTTAGCCCAGTTTAGTGGCAAGCTCTTTAGTCTTTGTGTTTTCCAGCGTGGTTTATGTGAGTCACTGATCTAGGACCCAGGACAGTGCCTCTTCAGTGCCGGCAGATCTTAGAGTATCTGTCGTTGTATTTGGTCCTGGTCACCTCCACCAGTTTAGCCAGTGTGTCTTTGTTCTCAGTTGATTTGTGTGAAGGTAGCAGTGATGCAGGTCTTC-TGTGGACCAGACACCC-AGCCTGGCCTTCTCCTTGATGATGCAGTAAGGGACCCCCATCTTTTGACAC-GGGCAGGCAGGAACACAACCAGCTCGGTGGGGTCCATGTCGTGTGCAGTCACCACTAGCTGAGCCTTCCTACTCTCCAGGTCCCCAGGTCTCCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCCTCGCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCTCAGGCCACGTCCTGGGTGAAttggtgtct----cagttactttttactcatcgctgagacaaaatacctgaagcccaaagttgggaaaggaaaggtttatttcttacagtttttggaggtttcagtccacactcagttggctccaaggcaggcgggcatggctgggcctcagTTCGTGGCTGCTGCAAATAGcgaacaggaaccagcaaagagcaagacacaccttcttcctgccattacatcacatcctggctccacccctatgtgggtggagcactgacaccatcaatctaagcactagacaatgaaaatgcacaatgcaaactcatgaggcctgggggacacagacataaaccatgacaactggtTAATCACAGGTGGCACCTTCAGCTGCCTACACAGGATTGC-CACTGTCACTGCAGC----------AGGGCCATTTGACAAAGTGGGTGAGAGCTCTCTTGGGCTGGCTGTCCTGTCCAATGCCAGAGTTCTTTGACCTCTTCTTAGACAGGGAATGTATCACCTTCTTGGCCTCCTGCTTTTT-ATGACAGCAGGAGGCAGGGCCACTTTTTTCCCCTTGGCCTTCTTCCTTTTTGTCACCTTGGGCAGCTGACAgag

a score=11411
s chr3            57765830 334 + 160039680 ATTATATTTATATACAGAAAACTTA-GTGTACATTTAACCCAATTTAGTGGCAAGTTCTTTAGCCTTTGCTTTTTCCAGCTTGGAAATGCGAGCCACAGACTTAGGACCCAGGGAGTTGCCTCCCCAGTGGCGACAGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCATATCTGTCATTATAATTGGTCCTAATAGCTTCCACCCGCTTAGCCAGAGCACCCTTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAACCTGTGTGAAGGCAACAGTGGTGCATGTCTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTTCCCTTGATGATGCAGTAGGGTACCCCCATCTTTCGACACAGGGCAGGTAGGAAAACCACCAGCT
s HiC_scaffold_1 194457630 742 + 233722169 attgtttttatgtacaAAACACCAAAGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTTTTCCAGCTTGGCGATGCGAGCCACAGATTTGGGGCCCAGGACGTTGCCTCCCCAGTGACGACGGATCTGAAATGACAGATAAGCAGCAGTCAGTGTGGTTTGCCATCCACCAAGGCTTTCAGAGCATGAGCGTGGACCCAGAGGCTGCAAGGTTCTAGCAGTGCAGCACCTGTCCCACTCGAGCCCATTTTACCCCTCGGCCCCGAGAGGAAAGCTCCCCTCACCCAGGACAAGGCCTGCAGGGACTCAGCACTCACCTCGTCATATCTGTCATTGTAGTTGGTCCTGATTGCCTCCACCAACTTGGCCAGTGCTCCCTTGTCCTCCCTAACAAGGGGGGAGGGGACAGGCATTTAGCCTCAGGTTATCTCTGAGAGCAGGAATGACACCCTCTGTACTGTGAAACACAAGCCTTTTGCCTCAGATAAAGCATGACCACATGGCTTATTCAGGTGAAGAAATTCTTAACCATCATGGGCAAATGTTCAGATTCACATACCACACACGCTGTTCCCGAGGCCCAGACTAACACTTACGAGTTGACTTGTGTGAAGGCGACAGTGGTGCAGGTTTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTCCCCTTGATGATGCAGTAAGGGACCCCCATCTTGCGACACAGGGCAGGCAGGAACACAACCAGCT

a score=15728
s chr3            57766150 405 + 160039680 GAAAACCACCAG------CTCAGTGGGGTCTACACCATGGGCAATCACCACCAACTGAGCCTTCTTGTTCTCCACCAAGGTGGTGACTGTATTGACTCCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAGAGGACAGGTGGCCTCTTAGTTGGGACGTCGCCTTTGCCAGCAGCTTTCTTCTCAGCACGAGCCAGTAGCCTCTGCTTCTTCTCTTTCTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCTGCCTGTCCAGCGCCTGGGTGAACTGGTTAATGGCAGGAGGGACTTTGAGCCGCTTGTAGAGGATGGCTCTTTGCCGCTGCAGCCTGATGTAGTGGGGCCATTTGACGAAGCGCGTTAAATCTCTTTTGGGCTGGATGTCCTGTCCAATGCCGAAGTTCTTGGGCCT
s HiC_scaffold_1 194458827 753 + 233722169 GAAACCCAGCAGACCTACCTCAATGGGGTCCACGTCGTGTGCGATCACCACTAGCTGAGCCTTCTTGTTCTCCACTAGAGTGGTGACAGTATTAACACCTGGAACACAACTACCGTGAGTGCATGCCCAGGCCACTCTGGTCCCAGAATGCAGATGCAACCAGCTTTGACTGTCAAAAAGCTAAGTCTACAGtgacttcagaaaaaaaaaaaacacaactacaGAGCCCAGCCCCCACACAGCACCACATCTGAGGAGGGGTCCCTCACCTGCTCGGAGGACGGGAGGTCTCTTAGTGGGGACGTCCCCCTTGCCAGCAGCCTTCTTCTCAGCCCGGGCCAGAAGCCTCTGCTTCTTCTCTTGCTTCGTCTCTGGTCTATACTTGTGGGCGAGCTTAAGCAGCTGGGTAGCTAGGAAAGCATCCTTCCATTAGGCCCTGCAGTTTCAGGTCCAGTCTGTCGCTTAGCATGATGTAAATTCGAAGTCCCTAGCAGTACTACAGGTTGAGCAGAAGCCCACAGGGCTACACACAGGGCCATGCACCACCTTTCCAGTTAGGCTGATTCCACACCCCCAAAGCCCACCTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCAGCCGCTTATACAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTGTCCTAG---GAAGAGTTTGGGACT

a score=7691
s chr3           57766281 135 + 160039680 CTTTGCCAGCAGCTTTCTTCTCAGCACGAGCCAGTAGCCTCTGCTTCTTCTCTTTCTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAGCTGTCTGCCTGTCCAGCGCCTGGGTGAACTGGT
s HiC_scaffold_1 62307645 128 + 233722169 CCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCCTC-GCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCT------CAGGCCACGTCCTGGGTGAAttggt

a score=8557
s chr3            57766532 152 + 160039680 CCAATGCCGAAGTTCTTGGGCCTCT-CTCGAACAGAGGGTTGACCACCTTCTTGGCCTCCTGCTTCTTGACGACGGCGGGGGCCGGGGCCACCTTCTTCCCC-TGGCCTTCTTCCCTTTGGGCATCTTGCTCGGCTACTGGAGAGAGAAAGAAG
s HiC_scaffold_1 194460178 139 + 233722169 CCGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCCGGTGCCACCTTCTTCCCCTTGGCTTTCTTTCCTTTCGG---------------Ctgggcagagagaaaag

a score=9940
s chr3            57809681 341 + 160039680 tttcttttttt-----ttcttctttttttt--------ttttttGACTGAACATGATTTGGTAGTTTATAAGAGAGCACCGTGGAAGCCCTGAGGAATGCAGGGCTCTCCACTTGTTCAGGGGACCATGGTTGGGGATATATTTGACCCCACAGTCATCAGGAAT----GAGCCACTGGTATTAAACCTGTGGAAGCCTTACTTCTTTGAGATGTGGATCTTCTGATAACCAGGGAACTT----------------GAGCCTCAATCACATGTTCCTTATTCTGCAGCTTGGTCCAAGTG---ATGGTAGCCACTGTGAT------CCTGGTCACTGTGACCTGTGGCTTCCTGAAGGTGCCACACATACCTGTCTGGACCCT
s HiC_scaffold_1 179450537 374 + 233722169 tttcttcttttaaaaatttttttattttttagataagaTTTCTTGA-TGAACTTGATCTGAAGG---AGGAAACGGCAGAGTTGGAGCCTTCGAGAGTGTAAGGC-CGCCACTTGTCCAGGGGACCACCATCAGGGTGAGGC---GCTCCTCAGCCACCTTGCTTTCAAAATTCATCTGTGTTAAACTTGGCGAAGCTCCACTTCTTTGAGAGGTGGATCTTCTGGTGGCCAGGAAACCTAACTTAGCCCTGTATAGGGCCTCGGTCACTTGTTCCTTATTTTGCAGTCT-GTGTGAATGGACATGATGACTTGTCTGATGTGCACGCTTACCACTACACCCTGGGGCTTCCTGAAGGTACCCTGCACACCTGTCTGGAGCTT

a score=24708
s chr3           57809694 580 + 160039680 cttcttttttttttttttGACTGAACATGATTTGGTAG------TTTATAAGA------------GAGCACCGTGG-------AAGCCCTGAGGAATGCAGGGCTCTCCACTTGTTCAGGGGACCATGGTTGGGGATATATTTGACCCCACAGTCATCAGGAATGAGCCACT----------------------------GGTATTAAACCTGTGGAAGCCTTACTTCTTTGAGATGTGGATCTTCTGATAACCAGGGAACTTGA-----------------GCCTCAATCACATGTTCCTTATTCTGCAGCTTGGTCC------AAGTGATGG--TAGCCACTGTG-ATCCTGGTCACTGTGACCTGTGGCTTCCTGAAGGTGCCACACATACCTGTCTGGACCCTGTCAGATCCAGCACTGGACAACATCCTGTTGGTTTGGATGACATGGCAAGGATG-AGCCTCACTTGGATATGAAAGCCATCCTTGCCACAT-TCTTTCCCATGTATTTGTTGCTACTGATGCCAGCGACATCTGGTGCTTCAGAAGAGAGCTGTTCATATTCATTTGACATGATGTGGCCACAAAGTGGGAAGTCATCAACTTTTGCCTTCCTCCATCCCAAGTCAAAGATGT--------GCATCAGGGCCACCCCTGTGG
s HiC_scaffold_1 27856042 669 + 233722169 ctttttgtttgtttttgtcagcAAACAGAATTTACTAGCGAGCTTCAGTGAGACTTGGGAGTCCTGGGAACCATGGTCCAGGGAAGCCCTCAAGAGCACAGTGCCCTCCACTTGTCTAAAGGGCCACGCCGGGGGATGTACTTGACTCCACAACCATCAGGGAGCAGGCGCTTCGCAGCCATCTGTTCTTCAAATTCATCAGCGTTGTACTTGGTAAAGCCCCACTTCTTGGAGATATGGATTTTCTGGCGTCCAGGGAACTTGAACTTGGCCCTGCGCAAGGCTTCGATCACATGCTTCTTGTTCAGCAGCTTGGTGCGGATGGACATGATGACCTGGCCAATGTGGACCCTGGCCACCGTGCCCTGGGGCTTCCCAAAGGCACCGCGCATCCCCGTCTGCAGCCTGTCAGCTCCAGCACAGGACAACATCTTGTTGATGCGGATGACGTGGAAGGGGTGGAGCCGCACCCGGATGTGAAAGCCATCTTTGCCGCAGGTCTTCACCATGTACTTGTTGGCACAGATGCGGGCGGCCTCCAGGGCTTCTGACGACAACTGCTCGTGTTCACCGGATACCATGTGGGCACACAGTGGGAACTCGTCCACTTTGGCCTTCTTCCGCCCCAGGTCAAAGATGTGAATCTTCGCATTCGGGACACCCCGGCAG

a score=6716
s chr3            57809742 276 + 160039680 AGCACCGTGGAAGCCCTGAGGAATGCAGGGCTCTCCACTTGTTCAGGGGACCATGGTTGGGGATATATTTGACCCC-ACAG---TCATCAGGAATGAGCCACTG--------------------------GTATTAAACCTGTGGAAGCCTTACTTCTTTGAGATGTGGATCTTCTGATAACCAGGGAACTT-----------------GAGCCTCAATCACATGTTCCTTATTCTGCAGCTTGGTCCAAGTGATG--------------------GTAGCCACTGTG-ATCCTGGTCACTGTGACCTGTGGCTTCCTGAAGGTGCCACACATACCTGTCTGGA
s HiC_scaffold_1 215281517 342 + 233722169 AGCACCCTGGAAAGTTTCAGGAATGCAAGTCCTGTCACTTGTCCAGGAGACTCCAAGTTAGGCTATATTTCACCCTTACAGGAATCATCAAGGCTGAGGTGCTTCTCAGCCAACATATCTTCAAATACATGGATTGAACTTGGTGAGGCACCCCTTCTTGGAAATGTGGATCTTCTGGTGGCCAGAGAACTTTAAATTGGCTCTGCATAGAGCATCTATCACATATTCTTTGTATTTGGGCT--GTACCAACAGTGTATAGAAAGACCTGTCCAATATGTCCAGTATGAACCCTTGTTGCTGGGTCTTAGGGCTTGATGAAAGCATCTTGTATGCCTGTATGGA

a score=47901
s chr3            57841913 1049 + 160039680 AAATTTATTTCATCTGTCTGTAAACAAGGTGTTTAATAGTTATGGCATTTTTTTAAATGCATATTAAGTCAGATGAGTTAGACTGTATCCCAGATGTAACAAAGTGCAGGGAAAGAAATGGACAAATCAGCAACAAGATTTGTTTTTAAATCTGTACATTATCCACAATGCCCAAACAATAGAAGCAA-TACTAGAATGTCCCTAAGGTAGTGCCATTCGAAAGGAA--------------------ATCCATCTCACAATAGCAACAGTTCATTTTAACAATAGTATGGCACAGGATACATATGAAAAAAATACATCACAAGACAGCCAAGTC---CACAATAATGCAACTTCATATAAAAACCTAAGCTGCAAATAAAAATTGGTCCTATGAAAAATAAACTGGACACACTCCAGATGGTTATGTTGGGATACCTAATATCCATAATGGCAGCCTTTACATTTTCTCAAGAGCACAGCTGGTGTGCAAG--AAAAGACAGG-------TCTGAGCTACTGCAATGACAGAATGTCCCTGGGAATTTGATCGGTATGGTTACTGCAGTAAGGTCGTGGGAGGAAGTGCCTT------TGCTCTCCAAGCTGCACGCTT-CATGTCCTATAGACACTACAAAT--AGTCTGTCCCAAGTGCAGTCACTGTATTAAAAAGTAAAACACTGCAACTCTCAATAGCTCATCAACAGAGGAGGTATTAATTAGTTAAATAAACCAGGCACTACA--CAGAAGAGA------ATGGAAGCAGACCAAACACCTCGTGTTGGTAGGGAGGGGTGAGAAA--------GGTGTGACGTACAGAGGCATGCACTTTTTCCTCCCAACCATGCGCTACAAAAGGAAGACTAGATGAGCCAAGGAAATGCTCCAAAGTGCTGAAAAGACACTGATCGAGTTAGAGACTGTAC-ACCGGCACCTTGCTTACTATTAACCTATTTTAGTAATCAGTAATCCACTAACTGCTAAGACGAAGTGATGCCCAACTTGGCATGCCCCCTTCCCCCAGTTTCAAGATATCATGCAAATCATTATTGTGCTGCAATTATGATGCCAGATAAAGGTTGGTTACAGAC
s HiC_scaffold_1 231146847 1081 + 233722169 AAATAAATCTCATCTGTCTGTCCATGAGGTGGTTCATAGCTAGGGCATTTTGT-GAATGTGTATTAGATCAGATGAGTTAGACTATATCCGGGGCGTGACAGAGTGCAGGGCA-GAAATGGACAGATCAGCAACACCACTTGATTTAAAAC---TGCATCATCCGCCAGGCCCAA-TAGCCGAAGCAAGTACTAGCATGTGTCTCAGATAGAGTCATTTGGAAGAAACCCTCTATGGATCAGTACAAATCCATCTCACTACAGCAGCGGTTCATTTTAGCAATAGTATGGCACAGAATACATATGAGAAAAATTCATCACAAGACAGCCAAGGCTGTCACAGTGGTGCAGCTTCATATAAAAACTCAAGCTGCAAATCAAAATTGGTCCAATGAAGAACAAACTGGTCACGCTCCTGATGGTTATGTCAGGATACCTAGTGTCCAAAGTGGCAGCTTTTATAATTTTGCCAAAG---AGCTGGTGTGCCAGAAAAAAGACAGGAGCGGAATCTGGGCTGTTGCCGTGATGGGCCGGCCCTGGG-GTCCAGTCGGTGTGGT---TGCCGTAAGGTCACGGCAGGAAGCGCCTTCTGCTCCGGTCTTGCAGGTGCGCTCTCATGTGTCCCGTGGACGCTATGAAGGAAGGTT-----AAGTGCAAACAATG---CTAAGAGCGAACTGCTGCCGCTCTCGGT-GCTCATTCACGAGAGGGGTGTTCATTGGCTAAACAAGCCACGCACTGCATTCAAAAGGGAGAGCGGGTGGAAGCAAACCAGA-ACCTTCTGTGCAAAGGAAAGGttgaggaaaggggaggggagtgaAGGACAGATACGTGCAC-TCTTCCTCCCAGCTGTGCTCCGCAAAAGGAAGACTGCATGAGCCAAGCAGATGCT-CAAAGTGCTAAAAAGACATTGATCACATTAGTGTCTGTACAACCAGCACCTTGCTTAATATTAACTTA-TTTAGTGATCAGTATCCCATTAATTGCTAAGACAGAGCGATGCCCAGCTTGGCATGCTGCCTCCCCAAGATTTGAAGGTATTCTGCACGTCATTATTGGGTTGCAATTATGCTG-CAGACAAAGGTTGGTTACACAC

a score=87802
s chr3            57961879 1718 + 160039680 CTGGTCCCGCTCAGGGCTTGGGTCCCGGGTTCCAGCACCTT----TTCCTCCCAGTCCTGGGCGAGCTGTGTTGGGTTTATGTCTTTATTTGACGAAAATGAGCTGTTGCACAGCCATTGGTACCTGTATAGGTGAAACATAGTATACAAGCAAGAAGCTTACAGCCTCAGTGGTGAAAATTTTTTCATGTCAGAGATCAATAACAACTCTTGCAGTCATTTATGTCATCCCTTCTTCTCCAGACAGAAGATACCAAAAAGTTGCAATCAAAGAATTGTTCCTGTTCATCTTATTGATAAAGTCACTAATAAGCCAAAATGTCTGCCAACACCAACCGCAGCTTGTGAAACCAGTTCTATTGCTACAAGATGCCCCGTTTGATTACTAAGGTTGAGGGCAAAGGAAATGGAATCAAGACAGTTATAATCAACATGGTTGCTGTTGCAAAGGC-----------CTCCAATGTATCCCACCAAATGTTTTGGTTGTGAGCTGGGAGCATAGACCCAGTTTGATGTTAAGAATGA--GTTACAATGTCAATGGATCTCATGAGGCACATAAGCTGCAGGACATGTTGGATGAATTCATTAAAAAAAT-TGTTCTCTGTCTTGAGTGTGAGAATCCTGAAACAGACCTGCATGTCAATCCAAAGAAGCAAACAATAGGTAATTCTTATAAAGCCTGTGGATACCGAGGCATGCTTGACACACATCATAAACTCTGTACATTCATTCTCAAAAACCCACCTGAGAATAGGGACACTAATATAGGAAAAAAAGA-------AAGGAAAAATGGAAAGGGCAAGGACAAGGAAAATGGCTCTG-ATCCACCAGTGAGACACCACCACTGCCACCAGCAAATGAAATTAGTCCTCC---ACGTGCTGTGGAAGAGGAGGAAGATGATGATTGGGGGGAGGAAACAACTGAGGAAGCTCAAAGG-----------------------------------------------------------------------------------CATACTGTTCGATTTTGCTAAGAAAAAGAAAGAAGAGGGCATTGTTGATTCATCTGATAAAGAGATTGTGGCTGAGGCAGAAAGGATGGATGTAAAAGCCATGGGTCTTCTTATTTCGACAGAAGTTCTCTTTGATGGGA-----AGAGAGCAGATCAAGAAATACAAGCACCATTTTCTAAGATTTTGTCATAACAATAAAAGGCTTAGCAGTACCTTCTTCATGATTTGGGATGTGTGGTAGCAATGCGTCAAACTCAGCTGATCTCCAAGATTCCACGTATCTTGAAGGCGATGTACGATGCAGACCTGTTAGACGAGGAGGTCATTACCAGCTGGTCAGAAAAGGCCTCTAAGAAATGCATCTCGAAAGAACTTGCCAAAGAGATTTGTGTCAAAGCAGAGCCATTTATTAAATGGTTGAAGGAAGCAGAGGACAAATCTTCTGGTGGCGAGGAAGAAGATGAAGATGAAAATAT----TGAGGTGGTATATTTGAAGACTGCCAGTGTA--GCAAGTTGAAACTGTGAAGTCTGACAACAAGGATGATGACATTGGTATTGACGCCATTTAAAAGGATGGATGCAACTTAGCTTAACAGTGTAATGCTGCAAACTTTTCTCCATTATCAGCCAGAAGTACAACACATATGTACAAGAGCTAAAGTGGCTTAACCTCATGCTACACTTGATACTTAAAAGCTCTTACTGTGAGTGGTCTATAATTAAGCCCAATGAGA-ATCTAGGGAGTCCATACATATCAGTGAGTAGTTGTAGtttgcttttt-----ttttttttttttg
s HiC_scaffold_1 200985527 1798 + 233722169 CTGGAGCCACCTGCTGTTCTAGACCCGGTTTCCAGCACCTACCTATCCCTCCCAGTCCAGGGCGAGCTATGATGGGTTTATGtctttatttgaagaaaatgggCTATTATGCAGCCATTGGTACCTGTTTGGGGGAAACATAGCATGCAAGCAAGAAGCTCACAGCCTCAGCGGGGAAAATTTCTTCATGTCAGAGACCTGGAACCG---TTACAGTCATTTATGTCATCCCTTCTTCCCCAGACAGAAGATTATCAAAAGCTGCAAGCAAAGA------TCTCTTCATCTTATTGATGAAGTCACTAAGATGCCAAAATGTCTGCCAACGTCGACCGCAGTGTTTCAGAGCAGTTCTAT--------------------GATTGCCAAGTTTGAGGGCAAAGGAAATGGAATCAAGACAGTTACGGTCAACATGGTTAACATCACTAAGGCACTTAATTGGCCATCAGTTTATCCCACCAAAGTCACTGGTTGTGAGCTGGGAGCACAGACATAGTTTGCTGTAAAGATTGACCGTTACATTGTCAGTGGATCTCATGAGGCGAATAAGCTGCAAGACATGTCAGATggagtcattaaaaaaaaatgttctctgTCCTGAGCGTGAGAATCCTGAAACAGATTTGCATATGAATCCAAAGAGGGGAACAGGAGGTAACTCCTGTGATGCCCTTGGCTATGGAGGCATGCTTGACACACAT---AAACT--GCACATTCATTCTCAACAACCCACCTGAGAACAGTGACAGTGgcacaggaaagaaagagaaggaaaagaaaaaacagaaagggcaAATCCAAGGAGAATGGCTGGGTATCCAGCAGAGAGACCCCATGTCTACCACCCCCAAGTGAAATGAGCCCTCCCCAACAGGCTGTGGAAGAGGAGGACAGCGAC--TTGGGG--AGGACACACCAGAGGAGGCTCAGAGGGGCAGGATGGGTGAGATCAGCAACCACACCAAAGTCTTGATGCTCAGTGACAACTTGGAGAGAACCCTAGAGGAGTGTGTGAATatcctgtttgattttgttaagaACAA-AAGCAAGAGGGCATTATTAACTCATATGACAAAGA-ATTGTTGCCGAAGCCGAAAGACTACCTGTAAA-GCTATGGGCCCTCTTGCTCTGACTGAGGTCCTTTTTAATGAGACGATTAGAGAGCAAATTAAGAAATACCAATGCCATTTCCTCAGATTCTgtcacaacaacaaaa-----agcaatacCTTCTTCGTGGGTTGGAGCGTGCAGTGGTGATGTATTCAGCTCATCTCCTCTTTGAGAACCCGCCTATCTTGAAGGAGGTGTATGATGTAGACCTTTTAGAAGAGGAAGTCATCATCAACTGGGCAGAAAAGGGCTCTAAGAAGCACATTTCCAGAGAACTTTCCAAAGAGATTCATGTCAAAGCAGAACCGTTTATAAAATGTTTGAAGGGGGCAGAAGATGAATCCTCCGGTGgtaaagatgacaa-gaagatGAAAACACTGAGTGAGGTGGTTTATTTGAAGACTGCCGGTATGCTGGGAGCTGAGGCTGTGAAGTCTGACAACAGGGATGATGACATGGATATCGATGCCATTTAAAAGAATGGGTGTGACCCAGC-TAACAGTGCAATGCTGCGCATTGTCCTCCAGGATCAGCCAGAAGTGCAACAGGTATGTGCGGAAAGTCAGATGGCTTGACATCGTGCTATACTTTCT-CCTAAAATCTGCTACTGTGAGTGGGCTGTAATCATGCCAAGTGAGACACCTAGGGAGTCCACATACGTCAGTGAACAGAGGTAGTTTGCTTATTGATCATGTGTTTCTTTTG

a score=72155
s chr3            57962025 1560 + 160039680 GCAAGAAGCTTACAGCCTCAGTGGTGAAAATTTTTTCATGTCAGAGATCAATAACAACTCTTGCAGTCATTTATGTCATCCCTTCTTCTCCAGACAGAAGATACCAAAAAGTTGCAATCAAAGAATTGTTCCTGTTCATCTTATTGATAAA-GTCACTAATAAGCCAAAATGTCTGCCAA-CACCAACCGCAGCTTGTGAAACCAGTTCTATTGCTACAAGATGCC-CCGTTTGATTACTAAGGTTGAGGGCAAAGGAAATGGAATCAAGACAGTTATAATCAACATGGTTGCTGTTGCAAAGGC-----------CTCCAATGTATCCCACCAAATGTTTT-----------GGTTGTGAGCTGGGAGCATAGACCCAGTTTGATGTTAAGAATGA--GTTACAATGTCAATGGATCTCATGAGGCACATAAGCTGCAGGACATGTTGGATGAATTCATTAAAAAAATTGTTCTCTGTCTTGAGTGTGAGAATCCTGAAACAGACCTGCATGTCAATCCAAAGAAGCAAACAAT-AGGTAATTCTTATAAAGCCTGTGGATACCGAGGCATGCTTGACACACATCATAAACTCTGTACATTCATTCTCAAAAACCCACCTGAGAATAGGGACACTAATATAGGAAAAAAAG-AAAGGAAAAATGGAAAGGGCAAGGACAAGGAAAATGGCTCTGATCCACCAGTGAGACACCACCACTGCCACCAGCAAATGAAATTAGTC---CTCCACGTGCTGTGGAAGAGGAGGAAGATGATGATTGGGGGGAGGAAACAACTGAGGAAGCTCAAAGGC---------------------------------------------------------------------------------ATACTGTTCGATTTTGCTAAGAAAAAGAAAGAAGAGGGCATTGTTGATTCATCTGATAAAGAGATTGTGGCTGAGGCAGAAAGGATGGATGTAAAAGCCATGGGTCTTCTTATTTCGACAGAAGTTCTCTTTGATGGGAAGA----GAGCAGATCAAGAAATACAAGCACCATTTTCTAAGATTTTGTCATAACAATAAAAGGCTTAGCAGTACCTTCTTCATGATTTGGGATGTGTGGTAGCAATGCGTCAAACTCAGCTGATCTCCAAGATTCCACGTATCTTGAAGGCGATGTACGATGCAGACCTGTTAGACGAGGAGGTCATTACCAGCTGGTCAGAAAAGGCCTCTAAGAAATGCATCTCGAAAGAACTTGCCAAAGAGATTTGTGTCAAAGCAGAGCCATTTATTAAATGGTTGAAGGAAGCAGAGGACAAATCTTCTGGTGGCGAGGAAGAAGATGAAGATGAAAATATTGAGGTGGTATATTTGAAGACTGCCAGTGTAGCAA--------------------GTTGAAACTGTGAAGTCTGACAACAAGGATGATGACATTGGTATTGACGCCATTTAAAAGGATGGATGCAACTTAGCTTAACAGTGTAATGCTGCAAACTTTTCTCCATTATCAGCCAGAAGTACAACACATATGTACAAGAGCTAAAGTGGCTTAACCTCATGCTACACTTGATACTTAAAAGCTCTTACTGTGAGTGGTCTATAATTAAGCCCAATGAGA-ATCTAGGGAGTCCATACATATCAGTGAGTAGTTGTAGtttgctttttt
s HiC_scaffold_1 110930097 1644 + 233722169 GCAAGAAGCTTACAAGCTCAgtggcaaaatttttttcacataagaGAT---TGAGAACTCTTGCAGGGGTTTATGTCATTCCTTCTTCTCCAGACAGAACATACTAAAAAGTTGTAATCAAAGA--TATCC----TCTTCTTATTGATAAAAGTGACTAATAAGCCaacatgtctgaaaaatgtcagttGCAACATTTCAGAACCATTCTAGCACTACACCTTGCTTCCATCTGGTTGCCAAGGTTAAGGACAAAGGAAATGGAAACAAGACAGTTATAGTCAACACTGTTGACATCACTAAGGCACTTGATCGGTCTCCTACACATCTCACCAAATACTTTTGTTGCAATTTGGTTGTGAGCTGGAAGTAGAGACACAGTTTGATGTAAAGAATGACTTTTGCATTGTCA-TGGATCTCATGAGGCTAATAAA-TACAGGACAATTTAGATGGATTCATTGAGT---TTGTTCTCTGTCCTGAGTGTATGAATCCTGAAACAGATCTGCAGGTGAATGTGAAGAAAGGAACAATTAGGTAGTTCGTATAAAGCCTGTGGCTATTGAGGCATTCTTGATAGACATCGAAAATT--ACATATTCATTCTCAAAA-CCCACTTAAGAATACTGACAGTggtacagaaaagaaaggaaaagaaaaacaaaa----caaagatgaggAATATG-----------------AGACATCACCTTCACCATCACCAACATAAATGAGTCTTCCCCCACTGACCATGGAAGAGGCAGAGGATGAGAACTATGGGGAGGATACAATTGAGTT-GCTCAGAGGCGCAGGATAGATGAGATCATGACGGAACCAAAGTCTTGAGCTCAGTGAAAATTTGCAGAGAACCATAGAGGAGCATGCAAATATCCTGTTTGGTtttgttaagaaaaagaaagaagagggcaTTATTGACTCATCCAACAAAGAAGTTGTTGCTGAAGCAGAAAAACTAGATGTAAAACCCAAGAAGCCTCTTGTcctaac-taaattttttttaatgagaagatACAGAACAAATTTAGAAATACAGTTGCCATTTCCTCAGATTCTGTCA---CAAGAAAAAGATCAGTGGTAACATCTTCATGATTTGGAGTATGTGGTGGTGATGCACCCAGCTCAGCTGCTCTGCAAGATCCTGAACATCTTGAAG---ATGTACTATGCATTCTTTTTAGA---AAAGATCATCATCTGCTGGTCAGAAATGGCCTTTAaggaatacatttaaaaagaacttGCCTATGAGATTCGTGTCAAAGTGGAATCaattataaaatgtttgaatGAGGCAGAGGAAGAATCCTCAGGAGCTGA---AAATGATGAAGATGAAAATATTGAGGTGGTTTACTCAAAGGCTGCCAGGGCACCAAAAGCTGAGTGTGTTCCAAAAGCTGAAACTGTGAGTTCTGCCAACAAGGATGATGACATTGATAATGATGCCATTTAAAAGGATGGGTTCAACCGAGCCTA-CAATGTAATGCCACAAATCGTCCTCCACTATCAGTCAGAAGTGCAGCATATATGTGAAGAAGCTCAAATGTCCTAACATCATGCTACACTTTAAACTGAAAATCTATTACTATGAGTGGTCTGTAATTAAGCCCAGTGAGATGTCTAGGGAGTCCATTCACATCAGTGGGAAGATGTAG-TTGCTTATTT

a score=6200
s chr3            57964718 98 + 160039680 tctGCTTATTTATAACGT--TTCTTTCAGAAAAACTAGTGGTGGACACATTTGGATCACATTTATACAGTTATAAAAAAGTAAAGATTTGATTTTGGTTA
s HiC_scaffold_1 200987297 98 + 233722169 TTTGCTTATTGATCATGTGTTTCTTTTGGAGAAACTAGTGGTGGACATTTTTGGATCACATTTATACAGTTATAAAGA--TAAAGATTTGTTTTtggtca

a score=4472
s chr3           58017293 246 + 160039680 aacagatgtggaggca----cacaC---CATCTCACTTGATGGTGAAAAAGTCTTTGACCAAATCCAATATCCCTTCATAATAAACATCTTGGAGAGATCAGGGACACAAGGGACACGTCTAAATATAATAGAGGCAATTTATAACAAGCCTATAGCCAACATCAAATGAAAAAGAGAGACACTCAAAGCAATTCCACTAAAACCAAGGACAAGACAAGGCTGATCTGTCTCTCATATCTT-TTCAATATAGTA
s HiC_scaffold_1 45948808 203 + 233722169 AACAGAAGTGAGAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATT---------------------CAGTAAGTGGTAGA-----AGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagta

a score=6296
s chr3           58017331 214 + 160039680 AAAAAGTCTTTGACCAAATCCAATATCCCTTCATAATAAACATCTTGGAGAGATCAGGGACACAAGGGACACGTCTAAATATAATAGAGGCAATTTATAACAAGCCTATAGCCAACATCAAATGAAAAAGAGAGACACTCAAAGCAATTCCACTAAAACCAAGGACAAGACAAGGCTGATCTGTCTCTCATATCTT---TTCAATATAGTAGTTTAA
s HiC_scaffold_1 66568365 209 + 233722169 AAAAGGACTTCAACAAAACCCAACACCCCTTCAGGATAAAAACCCTAAAGCAAACATGTATACAAAGACCACACCTGAATAGGATAAAGGGTATTTATCATAAACTGATatccagaatcatattaaatggtaagaaactaaaa------ctattatgcctcaaaacaagacaaggat-atcca-ctatcacctctTCTATTCAGCATAATACTTgaa

a score=14195
s chr3           58017332 1538 + 160039680 AAAAGTCTTTGACCAAATCCAATATCCCTTCATAATAAACATCTTGGAGAGATCAGGGACACAAGGGACACGTCTAAATATAATAGAGGCAATTT-ATAACAAGCCTATAGCCAAC-----ATCAAATGAAAAAGAGAGACACTCAAAGCAATTCCACTAAAACCAAGGACAAGACAAGGCTGATCTGTCTCTCATATCTTTT---CAATATAGTAGTTTAAGTTCTAttttaaaatattttttattacgtattttcctcaattacatttccaatgctatcccaaaagtcccccatacaccccccccccacttccctacccacccattcccactttttggccctggcgttcccctgacagcattggaaatgtaattgaggaaaatacgtaataaaaaaatattttaaaaaaaaGTTCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAAAAAGGATACAGTTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGA-AAGATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACA--GTAAAAATGGCCATTCTACCAAAA-GCAATCTACAGTCAATGCAATTCCCATCAAGATTCCAACA----------CAATTCTTGAAAGAACAATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATTTATACAATGAAAGAACTCTGGAAGGTATTACCATCCTGATCTCGAGTTGT-------AACAAT-------AAAACTGCATGGTAGTGGCATAA----AAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACA-----ACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACAACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATTTGAGA
s HiC_scaffold_1 44988361 1312 + 233722169 aaaggcttttgacaaagtccaacaccgtATCATGAtaaaatttctgaagaaaatagATGTAGAAGCACCATACCTGAATATAATATGGGCTATTTTATATCAAACCAATAGCCCACCTTCTACCAAATTCCTAA--------CCCTAAAGATtccccctaaaatcaggaacaagacaaggatgtcca--ctgtcatctcttttattcaatatagta-------------cttgaaacatt--------------------------------------------------------------------------------------------------agcc--------------------------------------------------agaggaaTTTGGTAAGAGAAAG------------------------------ACATCAAAGGGATACATGGAGGAAGGAATGACTCAAATTATCCTGATTTACAGATGATATAATAATCTATATAGAATATCCCCAAAACCCTACCGTAAGACTTTTAGAAGTAATAGTGAACTTCAACAAGGTAgcaggatacaagatcaacacacaaaaaa----catTAGCATTTGTGTATACCAACAAGGAATGGGATGAGGGggtaat-ataaaaataacaccaTTCACAGTAGTT--------TAAAAAGTatctaggaattaatctcaccagg-aagtgaaagacctctacacagaaaccacagtactctcacagaggagatggaagaggacatCAGAGAACAGGGAAATGTCCCCTGCTCCTGGATATACAGAACCAGCATTGTCACAGTGGCCAGAACCCCAAACTGTTAGACAGATTCACAGAAGCCATGATCAGAACACCAGCAGTGTCCttctcagatctagagaaaatgat-ctgaaaattAATTTGGACCTGAAGAGactcaaaattgaaaaagtaattt------tggGCAAAAGCAGGAAATTATG-------TGACTTCAAGCTATGTTATAAAGCCATAGTGGTAAAAATGGCATGATACTGGAACAAACAGAAACAGGCGTGTAGCTCAGCGGAACCGGACAGAGGGTACGGAAATCTCCCCAGACACACTCAGCTCTCTGATAGTCTAC--ACAGGGGCCAGG---ATCATATACTGCAGGGAAGACAGGCTGTTCCGCAGGTcgttctgggaaaactggttatctgtgTGCTAAGAATGA--------AGCGGGACCATTACCCCTCACCATGTGC------TAAGTCAAAatggtcaaagatctaaacattaaa------acattaaagcttctgaaagataaaataagtaacacACTCGCA------GACACAGGTGAGAGTGGGATTTTCTCAACAGATGCTCAATTGCATGA---GAAATAGCAAGAATCACCAAATGGGGTTGTATCAGACTAAAAAAGCTCCgtacagcaaaagaatcagc---agagtgaagacaCCACCTGCAGAACGGG---TTGCCAGCTACTCTGCA---GACTGAGGTCTACTACCTCAAATGTACAATGAACTCAAAA

a score=5692
s chr3            58017732 185 + 160039680 aaaaGTTCTAGGTAAAGCAATAAAACT-GCTAAAGGAGATAAAAAGGATACA-----GTTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAA
s HiC_scaffold_1 166844306 185 + 233722169 AGAAGCATTAGTTAGAACaatcaagcaagagaaaaaaaataaaagggatatatgtaagtaaaaaggaaagaacttaAGCTATATGTA------AGTGACATGGTCATTTATACAGAAGACCCAAAACACTCCACCAGAAGACCCTTACAGCTAATAAACACATTCAGCAAAGTGACAGGTCACAAAATCAA

a score=5436
s chr3           58017762 227 + 160039680 AAAGGAGATAAAAAGGATACAGTTAAAAAGG------------AAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAG--TTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAA
s HiC_scaffold_1 11724048 234 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaaaaaagactttttttttttaacaagtcaAACTATTTTTATTAAGAGATAATATAATCATTTACATAAAAGACTCAAAATATTCCACCAAAAAACCCCTAGGACTAATAAGCAATCTCAACAAAGTAACAGGATACAC-atcaac----acacataaatcagCATTGTGACAGT--GTATCAATAATGAATCCATtgtgaaaaaaatgaggaaaacaa

a score=20158
s chr3           58017763 1102 + 160039680 AAGGAGATAAAAAGGATACAGTTAAA-AAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCT-ACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAG--ATTGA---AGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTA--AAAATGGCCATTCTACCAAAAGCAATCTACAGTCAATGCAATTCCCATCAAGATTCCAA--------CACAATTCTTGAAAGAACAATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAAT-TTATACAATGAAAGAACTCTGGAAGGTATTACCATCCT-GATCTCGAGTTGTA----------ACAAT----AAAACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAA-TAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAG-ACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACAACTCCA--CATTGGACAGACGACTAATATACAAAATCTATAAAGAATT
s HiC_scaffold_1 64077362 1084 + 233722169 aaaaaaataaaagggatacatttaaagaaagaagattcCAAAGTGTTAGTATTTGCAGATGCTATGATACTCCACTTAGAAAGATCTGAA--TTCCACCcaaaaactgcttagaaataatgacaaagttcagcaatgtagcaggatg-------------aacatgaaaatcaatagcattcatgaaTACCAACAATTAACTCAATGaggaagaaattaggaaaacaataccattcacagtaccatcaaaaaaaaggacatacctaggaattaacctaatcag--ATGTAAAAGTCCTCTACAACAAGATAGCTATA-CTTTGAAAAAGGTGATTGACGAGGAGGACATCAGataatggaaagatgtcccttgctccaagataggcagaaccaatactatcaaaatggccacacttccaaaactgatat----tcagtgtaattcctatcaaaatacaAGAAACTCTCCACAGAACTAGAGCaaacaattctaaaatatataaggaaccagaaaagaccaaaaataacaaaagtgtTCTTGAGCAACAAAAATA------GAGACATCATGATATGAGAATTCAGGTTGTACTACACagaaacagtgataaaaacagcatggtaccagcacaaaaacaaatatgtggaccaaggaaacaaaacagaagacacagaaacatcCCCAGAGATATCCAGCTATTTGATCTTCCAC--AAAGAGGCCAAAAAATATACATTAGATAAAAG------CCTTTTCAACAAATAATATTGGGAAAATTTGCTACCTGTTTGCAGAAGACTAAAGC-------TGTACctgtc----tcaccatgtactaaactaaaatcaaaatgtatcaaagacctcaatgctaaaacagaaacaatgaatcaGGTGgagggtaaaataaataaaa--cacaaattaattTGCATAGCCAAGGACTTTCTGAAGAAAACTTTAATTACACAAGCAATAGCATCAAGAATTAATAAAGGGCAATATATCAAAATCAAAAGCTTCTGAACAGCAAAATAAACTACCAACAGGATGTGAAGAC--CCTAC----Tggaaaaacctttttttttccagctgttcttcaggggaagaatatctagaatatatgaagaact

a score=17886
s chr3            58017903 910 + 160039680 GGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAA--AGATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATT--CACAGTAAAAATGGCCATTCTACCAAAA--GCAATCTACAGTCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAGAACAATA----------CTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATTTATACAATGAAAGAACTCTGGAAGGTATTACCATC-CTGATCTCGAGTTGTAACA------------ATAAAA-CTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAA--ATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTC-TAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGG-----ACCTGA--AAAGCTTCTGTAGAGCAAAG-ACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGA
s HiC_scaffold_1 169946050 916 + 233722169 ggatacaaagtcaac------------aacaTTAACATTCCTAGAtgaaaacaacaaactcactgagagagaaattatttaAACCATACTATTCAAAATAG-catcaacaatg--aaatacttaggaatcaatctatcaaaggaaataaaaattctattttctaaaaattatagcACTCTGAATAAGTAGATTGAGTACAATATCAAAAAATGGCAAGATATTCCCTGCTCATGGATTGGAAGATCCAACATActtaaaatggccatattcccaaaattgttatagacttttaaagcaatcccaatcaaaatcctGTCAGCATACCTCAAA-AACAATATacagcattcctaaaattcatctggaaccagaagaaacttagaatacaAAATGCAATTCTTGGCAGCAAAAACAAGTGGAGGGCATTACAATCTCTGAattgaaattatagtacaaagctacttgataaaatcagcatggtcctgggATAAAAACAGTCCTCAGGAACAGTGGAACAAATTATAAGATGCAGActcaactccaaacacacttggccactttatctttcac--aaagaagctgaacatgttcactggaaaaaaaaaaccatattatctttaataaatgctaatggaaaagctggctctccgcatacaaaagactaaaac-------tagactcatgtctatcaccacacactaaagTGAGGACacaatggatcaaacatctaaatattaacaaaaaaaccctcaatctaccagaagagaaagtaggtagaaatctttaaggcatagggggaggaga-gagttcatgaacaaaa---------ctctgacagcatgaaaaacaattcaaatattcCACTGTTAGGTTATCATCTTATTAAAGCTcttgcacagaaaaataaatcaccaccaaagtgaaaagataatctacagagtgtaaaaaaa

a score=19629
s chr3            58017905 942 + 160039680 ATACAAGATTAACTTAAAAAAAAAAAT----CAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTT----TCAAGTCATTGAAGAAAGATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACA--GTAAAAATGGCCATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCTT----------GAAAGAACAATACTCAAGTCCAAACAGAAAA-ACAAAAACCTCAGTATAGCTGAAACAAT-TTATACAATGAAAGAACTCTGGAAGGTATTACCAT-CCTGATCTCGAGTT-------------GTAACAATAAAAC-TGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTC-TAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAA-AGACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATC---AACAACTCCACATTGGACAGACGACTAATATA
s HiC_scaffold_1 161838351 941 + 233722169 atacaaaatcaactttaaaaagGCAATAGCTTAGTCAACAGGCTTTCTACATACAATGAACTA-CTAAGAAAtcaatcaggaaaacaattccattcacaatagctcAAAA------GAAATACTGAGGAATCAATCTATCCAGG-AGGTgaatgacctctacactgaaaataataatgaaacaagTCCAAAGAGACTGAAGAAAACACTGGAAGATGGGAAAACCTCTTATGTTCATGGATCAGTGGAATTAATATGGTTTAAATGGCCATATTATCAAGAGTGAcctacaggttcaatgcaattcCCATCAAAACTCCAGTGTCGTTcttcatagaaatagaaaaaactatcctaaagttcatatggaaAACAAGAAAGACCCAGAATATCCAAAGCAATCCTAACCAACAAGGGCAAGGCTGGAGGCATTATAATGtccaatttaaaattatactacaaagccataatAATAAAACAAGCATGGTACAGGCAC-AAAATAGACATTTAGACCAATAAAGTAGAATAGAGAACACAGAAACAAGCCCATGCAACTCCAGTCAGTTGATacttgac--aaaggagtcaaatacaTATATTGG---AGAAAAGACAACCTCTTTCACAAATagttctgggaaaactggatatccatatgTAGCAGGTTGAAAC-------TAGA--TGTGTCTTTTACCCTGTACAaacataaattcaaaatggaCCA-------------GAGACCTGAAGCTTTGTAACTGTTAGATTAAAACATA-ACAAGACATTTGAAGTCATGGGTGCAGGCAAAAACTTCTTGAACAGTAC-CCAATAGCACCAGAAATAATTGTAAGAATCAAC-AATGGGGCcacatgaaatttaaaagcttctgcgcAGGAAGAGAAATAACAGACTGAAGAA------AGCCTACCAAATAAGAGAAAGTCTTTGCCAGCCACTCTTCCAACAGAGGATAAATCTA

a score=21863
s chr3            58017959 904 + 160039680 AACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAGA--TTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTA--AAAATGGCCATTCTACCAAAAGCAATCTACAG-TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAGAAC---------AATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATTTATACAATGAAAGAACTC---TGGAAGGTATTACCAT-CCTGATCTCGAGTTGTA-------------ACAATAAAA-CTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAA-------------------ACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATCATC-AATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACA------ACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAA
s HiC_scaffold_1 200608695 920 + 233722169 AATCTgccaagaaagaaatcaggaaaataatttcatttatagtaGCTTCAAA----AGcaaatacctaagaatcaacctacccaaggaagtgaaagacttctgtaatgaaaattacagatc-tcaaagaaagaaactaaagaagacaTTAGAGAATGAAAAGACTTCCCTTGCTCATAGATTGACAGAACTAATATTACTAAAATGGTCATATTACCAAAAGTAGGCTAGAGGTCCATAAAATACCCATTAgaacatgaatat--tttttcacagagctacataaaaaattctaaaattcatata-aaatacaaaagacccagaatagtcaAAGCAATCTTTa--gtaaaaagaatcaagttgGAGGCATCACAGTACTTAATattgaattatatttcaaaaccACCATAACAAAAGCAGCACGATACTGAca-aaaaaaagacatgtaaacCAATGGGAtagaacacaaacaaaacaaaacaaaaaagaaaccagaaacaaacCCAGGCACCCATGAgcatctgatttttgac--aaaggaatcaaaaatat-----gttttaaaaatcacagtttctgtaacaaatggtgctgaaaaaactggatATTGACTTGCAGAATACTGAAAC-------TAGGTCCTTAACTTTTACCTTGTGCTAAATTCAAATCAGA-ATCACAAAGGCCTAggtataaaaacagaaactctgaagctgctagaacaaaata-----------cttgaagtcaAAAGCACGGGCAAAGACTTCTTAAGCAGAACTTCAAGAGCACAGGAAATAGTATCAAGAGTTAACAAATGGAACTACAGCAAACTAAAAAATTTATGTATAGCAAGGGAAACAGCTAATGAGGTTAA--GAAACTCAACTGAATGGAAGAAAATCTTTATTCGTGACTTT---TCTGATagaagattaatatctagaatatataaagaa

a score=9594
s chr3            58018048 466 + 160039680 GTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAGATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAG-TCAATGCAATTCCCATCAAGATTCCAACACAATTCT----TGAA-----AGAACAATACTCAAGTCCAAACAGAAAAACAAAA---ACCTCAGTATAGCTGAAACAAT-TTATACAATGAAAG--AACTCTGGAAGGTATTACCATCCTGATCTCGAGTTGTAACAATAAAACTG-CATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGA
s HiC_scaffold_1 168307234 450 + 233722169 GTGAAAGATCtctgaaatgaaaact--aaaacactAAAGGAA--CTGTAGAAGA---CAGCAGATGGATAGATCTCCAATGTTCATGGATTTGAAGAGGTAATATTAAAATTGGTCATACTACTGAAAGAAATCTACAGTTTAGTGAAATGCCCATCAAAATAACGATGATATTCTTCACTGAACTtgcagaaaaaaatccaaattcacatATAAACACATAACATGCCCAAATATG--CAAAGCAATCCTACACAATAAAGGCTCAATTTCAAAG----------CATGTTCTAGAGCTGTTATAGCATAAGTATCATTGTATTAG--TAAAAAAATACATGCAGACCAATGGACTAGAACAGAGAACTGACAAATAAGCTCATGTATCTACAGTCATGTGGTTTTTGAT----AGGAG-----AGCATACACTGgg---gaaaagacagcctcttccaCAAAGGGTACTGAGAAAACTAGA

a score=15388
s chr3            58018064 561 + 160039680 ATAAAATTTTCAAGTCATTGAAGAAAG--ATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAG--AACAATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAAT-TTATACAATGAAAGAACTCTGGAAGGTATTACCATCCTGATCTCGAGT-TGTAACAATAAAACT-GCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTC-TAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACC
s HiC_scaffold_1 162088038 545 + 233722169 ataaaatcatagaA-CATTGAAGAAAGGAACTAAGGAAGACACCAGGAGATGGAAAGATCTCCCATCCTCATAGATCAGTAGAATTAATTGTA------------TTATCAAAAGCTacctacagattcaatgcaattttcttcaaaattccaATGATATTCTtgatagaaaaaaatcctaaaatttatatggaaatacagaagacctaGAATAACCAAAGCAGTcctgagcaaaaagaacaaagttggaggCATCATAATACCCACATAAAAcacataataacaaaaataatatgata-ttGCACAAAAATAGATATGTAGACTAATGGAATAGAATATAAGACACAGAAACAGACCCTTGCTGCTACAACCATCTGATTCTTGAT--GAAGGTGTCAAAAACACACATTG---TagaaaagataatctctttaacaaatggtgctgacaaATCTGGATATTCACATGTAGAAGATTGAAAT-------TAGTTCTCTATCTCTTACCCTATGTAGAAATCatttcaaaatggatcaaaaacttgggtttaaaatcagaaacatgaagcc

a score=9548
s chr3           58018155 708 + 160039680 AAAATGGCCATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAA--------------------------------------GAACAATA----CTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATT-TATACAATGAAAGAACTCTGGAAGGTATTACCAT-CCTGATCTC-------------GAGTTGTAACAATAAAACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTA-CATCTTCAACAAATGG-TGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTC-TAATAGACCAAACACT--TTTA--CATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCA--CAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACAACTCCACATTGGACAGACGACT-----------AATATACAAAATCTATAAAGAA
s HiC_scaffold_1 27618426 725 + 233722169 aaaatggCCCTGTTACCAAAAGAGACCTACAAATTCCATGCACCCTCCATTAGATAACCCATAACATTCTTCAAAAAAgtggaaaaccaaaacaaaaactataatataaaacagaacaacaactcCTAAAATGTGTGTGGAAgcacaaaagacccagaataacCAAAGCATTCCTAAACAA-AAGAGTAATGTTGGAGGTATCACAACatctaatttcaaaatacattacaGAGCCATACTAACAAAGCAGCATGATACTATTATAAAAATAGACACATCGGGTATTAGGATAGGATAGATGACACAGAAAAGAGTTCATATACTTACAGCCATCTG--TCTTGAT---AATAGGTCAGA------AGATACTTTAAGGAAAATCAGCTTCGATAATAAATGGTTGCTAGGAAAGCTAGTTATCAATA---GAAAGATTAAAAC-------TTCATCTGCATCTCCCACCCTGTACAAag-tcaattcaaaatggatcaaagattaatTTAGCAATAAGACCTGAAGCTTTGAATCTAGAAGAA-AGCATTGAGGAGATA---TTGAAGTTATAAGCTCAGTCAAAGTTTTCTTGAGCAGGAC-TCGATAATAGGAAGGATATAATAGCAAGAATCCACAAATGG-----AATGAAACTGAATAGTTTTGG------AATGACAC---------GAGGAAGAGATAacttacagaatgagaaaa-------------acattGGACAG-TGACTTTTCTatccagaatattaaaaaagtaaaaaaaa

a score=4632
s chr3            58018263 154 + 160039680 CTCAGTATAGCTG-------AAACAATTTATACAATGAAAGAACTCTGGAAGGTATTACCATCCTGATCTCGAGTTGTAA--CAAT--AAAACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATA
s HiC_scaffold_1 215099117 157 + 233722169 CTCAAAATatctgttttaataaaaattgtatgCTATTTCATGAATCAGGAAATTATTA--------AACTTAAGTTTCAAAACAATCAAAAACCACATGGTAAAGGCATAAAAACAGGCACAGAAACCAATGGAACTGAATTGAGAAGCTAGAAATAAACCCATA

a score=6869
s chr3           58018326 525 + 160039680 CGAGTTGTAACAAT-AAAACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTT--TGA----ATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATT---------AATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAG-ACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGA---TCAACAACTCCACATTGGACAGACGACTAATATACAAA
s HiC_scaffold_1 75404637 511 + 233722169 caaagtatagCAATCAAAACAGTAGAGTCCTGACATAAGAATAGACACATAGACCAATGAAATAGAATTGAGAGCCCAGAAACAGAGCCACACCTGTGCTGTCA-CTGATCTCC--ATAAAGGgtgccaagaatataaaaggg---acaAAGTATAGTCTCTTCAACAAGTAGGGTTGTGGGCCCTGGATATCTATGAGCGAAAGAGTGAAGTCTGGCCCTCATCTTACACCA--CACcccaaaatcaactcaaaatgcaTCGAGTTAAGTATTAAACctgaaactaaa-atatt-----taaaagaaaaaaaacaaggagaaagCCTCATGACATTATGCGTGGC-------AATGACTTCATGAATAGAACACCAA-------------AAATCCAACAATCGCTGAATCAGACAAATGgggctacattaaaataaagatcTTCCattcaacacagaaaataattgACGTAGTAAAAAGACAATAAGTACAATAGGAAGAAGTATTTTCCAACCATATATCAGATCAGGGATTCATATTCAAA

a score=6035
s chr3            58100587 163 + 160039680 ATGTTAAATATCAAAATCTTACCCTTGAGTCATCTCTATACCAGTTGTCAATGTCTCTGGATTTCTGTTAGTCACAAGTGGTTTTGTTATAACAATCTAATTACTAGTGTATGAACTTCTTGGTCC-ATTTTTATTAATCTTGGGTATCAAAGGGAATCTGAAG
s HiC_scaffold_1 123139684 164 + 233722169 ATGTTGGGCATTAAGATCTGGCCCCTTAAGCTTTCTCACCCCTGTTGTCGATGTCTCTGGGTTTCTGCCAGTTGTACTTAGTTTTGACATATCGTTCTGACTGGTGCCAGATGAACTTCTTTGTCCTCTTTTTGATGATGTTGGGCTTCACAAGGGGTCTGAGG

a score=4688
s chr3           58177788 197 + 160039680 TATTTTGTGAAATACTGCT-GTATGAGATAAAATAAGTTAATATTAGCTATTAAGCTCAGGATTAAAAAAAAAAAACTGTGACTGCCAATGC-TCAGCGATTG------AACAAA----------AGCAGCCAATAAATTACAACCAATAAAGTAGCTTGTGAATGTATGGTTATTCAATAAGTTCTGGCATTTTGGAAAGACACAAATATGTCA
s HiC_scaffold_1 67514832 196 + 233722169 tattttttgaagtaTAACTTGAGTGTTATAGA---------TACTAGAAATTAAGATCAGAAT-----AAAAGAACTTGTGATTGCCAGGTCATTGGCTACTGGCTATCAACATACTCTAGAGTAATCAGCCAAATAACTA-----AGTGACATTGTTTGTGAATTTACTGTTGTTTAGTAAATTCTAACATTGTGGAAAGACACAAGTGCGTCA

a score=4619
s chr3            58185326 150 + 160039680 ACCATTAAAGTCATTTGAAG----CTTCTAGGAGTTATTCTTGTGGACTTA--GAAGCCCCTTGGCT---CCTTTAGTCCTC-TGCCATCTTTAGGGATGGGTCAGTGTCTGGTGGACCATGAAGCTTCCCTCAGAAGCATGGGGGATATTCTCCTCTTT
s HiC_scaffold_1 210534680 160 + 233722169 atcattaaggTCATACAAAGGGTCTCTTTGGGGGTTACTTCTGGGACCTTGTGAAGATTCTTTAGCTTTTCCTTTACCAGTTGTGTCATCTGTCAGGCTGGGTCAGGGTCTTGCTGGCCATATGCCTCCTCTCAGAAACTTGGGAGATATTTCCCTCTCT

a score=10775
s chr3            58314431 890 + 160039680 AGGACAGCTGCAGGTtttttttgtt-tgttt------gtttgtttgtttgtttTGTACAACTACAGAGTAATATTCAGATGGCAGAATGCCAGGGATGGCGTACAAACTGCATTGGACACAACTAACAAGAA-------------------------------------CCCATATGTTAGCAGGCAAGATTGACGGCCACTGATAA--------GTCAGGGCTGTCTAAAGGCATATTTGATAGTG------ATAAAGACATCTTTGTTGATGGGCTCAAA-----TTTCTCTGAGGATCAGCtaaacctgccttctagtttatatgtacgttaatagcccctacctccttgttcagctatgtgaaaacaacacctttctgttcaactatatataataaacagg--ctgagtgagctttcagggt--------gctgtagctt----------ctctaccccatcccatcttgtctgtgtgtttctgac---ctctcttctttccctcagtgtcagttcagatccatgggagctatgcaaggat------cccgcaCTTGACAACCAACGCCTTTTTTGTGGCACGAGCTTTGTCTTTAGCTCTGGGCTGAAGTTCCTGTTCGTCATCTGCAGCTGTGGTATTCCACGTCTCTCCCAGCTTCTTTGCAGCATCACCAACGGATAAACCAGGATGTTCTCCTTGAAGTTGGAGCGATACTCAGAAAAGA----------GGCCAAG------CAAGGTTAATGGGAACTCCGGAACACTG--TTTCCTCTGAGAGGGATCTGGGTTCTCCTGTCT-TTTTCATAACAAGTC------------------------TGTCCCCTTGTCTTTAGCAGACATGATCTTTCACCTCTCTGACTACGACTTAGAAAAACCCT-GAAGTTGGCTGAGGCAACGGACGATTTCTTCTTATCCCCCTCACCAAGTTTCCACAAAGAATGTGTATCCTGACGTGTTACCTGTCGGCTTCGGAGGCTTTACTTGGC
s HiC_scaffold_1 121717653 930 + 233722169 aaaacagctgcaatttgttgttgttgtattttgggtggttttttttttttttttttgcaattacaGAGCAATATTCAGTTAACACAA---CAATTATTTTGTATAAGCTGCATCACAGACAGTTGAAGGGGAAAAGCTACTGTCCCTGTACAAAATTTGTGCTGTGCATCCCATTCTGTAGCTGGCAAAGTTAGTGGCTACTGAAAATACACCAGGACAGGGCTATCTACAGACATATGCAGTCGTATATAAAAGAAAGACAT------TGCACAGCTTAAAACACATCTTACAGAGCTTtacttttcactgtttt-tctttaaaatgaatg------------------------agTTGTGTACAGGGAGTTTAATATTATATAGACAAAAAAAATGCACTGGAACCAAGTGATTCATCATAGTcattttctgtttcatctttgTCCTTATCctcttcatcttccttttttttctttttcgtcttgacagcttcctttctctccatcAGGTT---TTCCTTTATTCGGGAG----ACAATGATGTCTTTCCCACACT-------------ATTCCTTAGTGCGGCAGCCTTCCCCTCA---------TAAGG---CTGCTTGTCATCTGATGCAGTGTCCTTGCACATTTCTCCCAGTTTCTTTGTGAAGTCACCAATGGCAAGGCCAGGATTCTCCTCTGAGCTTTGGAG-GATACTCAGAACAGAACAAGAAGGCGGCCAGAGGGGCCCCAGGCTCACTGGGATCCTTGAACTTTGGTTTTTCTTTAGGAGGAatgtaagttttcatttctcttttcataaTGGCTTCTCCATCTTTGCCGTGTCttcaaattttcctttctctttagcaGACATGATCTTCCATTTTTATGAGCGCTTCTTAGAAAAGCCTGAGAAGTTAATGGAAGCATCTGA----------------------------GTGTACAAAGAATGCGTATGATGACAT-TTGCCCCCCAGCTTCTTAGGCCCTCCTTTGC

a score=3932
s chr3            58378736 169 + 160039680 ACAGATGATGTGTGTGTGGTCCGTAAAGATCACAATGAACCTCAA-AATATCCATCACCCAATGATGTCATAGCTGT-----CATGATGCTCAGGCACA------ACCAAACAGTGTAATGTTGGTGTAAACAAACCTACTACCTTGTCAGTCCTAGAAAATTGTAGCCAACACAATTACA
s HiC_scaffold_1 177415109 176 + 233722169 ATATATGATG-----GTGGCCCCATAGGGCTATAACGGAGCTGAGCAATTCCTATTGCCTAACGACATTATAGTGGTTGAAACATCATAATGTAACACATTATTCATGTATTTGTGTGATGATGGTGTAAATAAACCCACTACACTGTCATCCATGTAAAAGTATAGCACATACAATTGCA

a score=7377
s chr3           58378761 242 + 160039680 AAGATCACAATGAACCTCAAAATATCCATCACCCAATGATGTCATAGCTGTCATGATGCTCAGGCACAACCAAACAGTGTA-ATGTTGGT-----------GTAAACAAACCTACTACCTTGTCAGTCCTAGAAAATTGTAGCCAACACAATT----ACAGCACACAGCTCTTGCTGGTGATAAACAACTGTGTTCCTGGCTTGTATGTT--------TATTTTTATCTTTATTTTAAAGTGCATGTCTCTTAATTATATAAGAAA
s HiC_scaffold_1 31000036 258 + 233722169 AAGATTACAATGAACTAAAAAATTCTTATCACCTAGTGATGTCATAGCTGTCATGATG-TCAG-------CAAACATATTACATGTTTGTAGTGATACTGAGAAAACAAAAGTGCTATACTGCCAGTCTTATAAAAATATAGCACATACAATTATGAACAGTGCATAATACTTGAGAATAACAAAAGACTATGTCActtgtttatgtatttaataCACTATACTTGTTACTATTTTAAAGTATAGTcttactatttattaaaaaaa

a score=15606
s chr3            58404669 511 + 160039680 GTTTTCTCTTTGCTTCCAGACCTCTGCCATCATGGGTCACATGCATGCTCCC---CAGGGCCAGTCCCAGTTGGCC-AGCCATATCA--------TCCCCACATGGCTCAAGATGACGTCTGACAATGTGAAGGGACAGATTTACAAACTGGCCAAGAAAGGCCTGACTCCCTTCCAGATAGCTGTGATCCTGAGGGACTCACATGGTG--GCACAGGTCTGTTTTGTGACTAGAAATAAAATCTTGAGAACCCTTACATGCAAAGGCCTTGCCC-----CTCCCAGGGGATCTCTACCATTTGATTTAAGAAAGGAGTTGCTG--------------------------------------------------------------TCTGAAAG-----------------------------CACCTTGAGAGAAATAGAAAGGATAAGGATGCCTGATTCTGATAGAT--------AACAGAATTTACCAGTTGGCTTTATACTACAGTGC--------TCCCACCCAGTTGGAAATATGAGTTGTACACAGCCTCTGCTCTGGTGGCATAAATGCTGTTGTGTACACAAACAATAAAATCACTTTGAGTAAATTgaaagaaagaaagaaagaaa
s HiC_scaffold_1 219726779 619 + 233722169 GTTGGCCCTTTGCTTCCAGACTGCTACCACCATTGGTCGCATGCATGCTCCTGGGAAGGGCCTGTTCCAGAGGGCTGAGCCGTATCACTGCAGTGTCTCCACCTGGCTGAAGCTGATGTCAGGCAAGGCG------CAGGTTTACAAACTGGCCAAGAAGGGCCTAACTCCCTCACATATCAGTGTGACCACAAGAGGCTCTCATGGTGTTGCACAAATACATTTTGTGACAGGTACTATAATCTGGAGAATCCTAAAGCCTAAAGGACTCACTCCTGATCTCCCTGAGGATCTCTATCACTTAA-CTAAGAAAGTAGTTGCTGAGGccggggacatagttcagtggcacagtgcctgcctggcaagcacaaggttgattcctggtactgaaagaaaaaacaaaaagaaagcagctGTTGTTCCATCTTGAGAGGAACAGAAAGGATCAGGAAGACAAGTTCTCTCTGACCTTCATCGAGCCAGATTCACCA-TCAACTTGATATTATAGAACCAAGCAGGTCCTCCCCAGCAGGAA----GAGTCATCCACAGCCTCCATCCTGGTggcat---tttgtttatgaactcaAGCAATAAAATCA---TGATttaacttaaataaataaataagtaaa

a score=4596
s chr3            58769873 193 + 160039680 ATCTAGTGATGGTC---TTGCTGGCAGAGTCCCGAGGCTGTGCAGGGCTTCACATGCCAAGGGACAGGGAGTGCCCATGTCCTGGCCTATCTCTCTTCTATAAATCCACC-----ATCCTGGGTGCTCTACCATT-------------ATCCTAGTTAATCTTCCCCAAAGCCCTACCTGTAAGCACCGCAGTTGGGTTGAGTGCCACCCTCTT
s HiC_scaffold_1 115506411 206 + 233722169 ATGTGGTGATGGCCACATTGCTGGCAGAGCCCTGAGGTGGTCCAGGGCATCACATGAGAAGAGACAAGGAGCAAGTGTGTCTGG----ATCCTGCTCCCAAAGCAGCACTATTCAATCTTAGGGGCTCCACCCTGCTGACCTGTGTAAATTCCAGTC-ATCTTCCAC-AGGCCCCACCTCTAAATATCATAGCCCA--TTATTTCCTCCCTCTT

a score=13446
s chr3            58987142 726 + 160039680 GGCTGTTCTCCTGTATAGGAGGCAGCCATGGCGCCCAGCCGGAATGGCATGATACTGAAGCCCCACTTCCACAAGGATTGGCAGCAGCGAGTGGACACTTGGTTCAACCAGCCGGCGCGCAAGATCCGCAGGCGCAAGGCCCGGCAGGCGAAAGCGCGTAGCATCGCCCCTCGCCCCGCGTCCGGCCCCATCAGGCCCATCGTGAGGTGCCCTACAGTGAGATACCACACCAAGGTCCGGGCTGGCAGGGGCTTCAGCCTGGAGGAGCTCAGGGTGGCTGGCATCCACAAGAAAGTGGCTCGCACCATCGGCATCTCTGTGGACCCGAGGAGGCGAAACAAGTCCACGGAGTCACTGCAGGCCAACGTGCAGCGCCTGAAGGAGTACCGCTCCAAGC-TCATCCTGTTCCCCAGGAAGCCTTCTGCTCCGAAGAAGGGAGACAGTTCTGCTGAAGAACTTAAGCTGGCCACCCAGCTGACAGGACCTGTGATGCCCATCCGGAATGTGTACAAAAAGGAAAAGGCCAGAGTTATCACAGAAG---AAGAGAAGAACTTTAAGGCTTTTGCCAGTCTCCGAATGGCCCGTTCCAATGCCCGACTCTTTGGCATCCGAGCAAAAAGGGCGAAGGAAGCTGCAGAGCAAGACGTTGAAAAGAAAAAATAA--------------TTCTGTGTTGGAGAGTTGCAATAAATTTTCCATAAAGCAAAAAAAAAAAAAAAAagaggagaa
s HiC_scaffold_1 209494504 621 + 233722169 GGTCCTTCTCCCATGCAGGAGGCAGCTAGACCACCCACCCGAGAATGCGTAATACAGAGTCCCCACTTCCACCAGGACTGGCAGAA----------------CTCAGCCAG-AGGCCTG-GAGAT-TGCAGCCATGAGGCCTGCCGAGCAAAA--CTGTCACATT-CCCTTTGCCCTCTGCATGGACCTTCCCATTCCCCAGTAAGGTGCTCCATAGTGAGATGTCACACGAA-CTCCAAGCTGACAGGCACTTTAGCTTGGAAGAATTATGGGCAGC---------------ATGGGCTCAGCCCATGGTCATCTCTGTGGAGTC-ACCAGGTAGAACAAAGCT-------------------GTGTACAGC-TCTGAAAGA---------CAAGCATGAATCTGGGCATC---------TATACACCCAAGAAGGGAGACTGGTCTGCTG-AGAACTCAGATTGGCTGCCCAGCTGCCAGCACCAGGTACACCCATCCAGAAAGTCTAAAGTGATGGGAA-GCCAGAG-CACCTCCGAGGAGTAGGAGGAGAAC-TCAGGGTGTTCACTCATCTTCCTATGGCC----TCATGGTGCGGCTCATTGGTC-----------------AAAGAATCTGCAGAACAagctgtcaaaaagaaaaaataaagtacccCTGGCACTTCTatgct---------------------tataaaaatgaaaataaaataaaaacaggagaa

a score=8621
s chr3           58987659 176 + 160039680 AAAAGGCCAGAGTTATCACAGAAGAAGAGAAGAACTTTAAGGCTTTTGCCAGTCTCCGAATGGCCCGTTCCAATGCCCGACTCTTTGGCATCCGAGCAAAAAGGGCGAAGGAAGCTGCAGAGCAAGACGTTGAAAAGAAAAAATAATTCTGTGTTGGAGAGTTGCAATAAATTTTC
s HiC_scaffold_1 93835133 174 + 233722169 AGAAGGCCAG-GTCAtccaagaggaggaaaagaacttTAAGGCATTTGCTGGTCTGCGCAGGGCCCGTGCCAACGCCTGTGTCTTTGGCAT-TGGGCAAAGAGAGTCAAAGAAGCTGCAGAGTAGGATGtggagaagaaataataaagcaCTGTGGGGGTCTTGTAATAAATGCTC

a score=4067
s chr3           59068415 129 + 160039680 TCTGACCAAGGTGTGCAACAAAGGGACACCTCCCATGTA-GGAGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACT
s HiC_scaffold_1 97172554 121 + 233722169 TCAGACCAAGATG-GTAACCATAGTA--------ATGTACAAAGTCATGTGTTACTTATTAATCGGGGTACATTCTGAGAAACAAGTTGTTTGGCAATTCTACCATTGTATCAACATCACAAAATAGGCT

a score=4154
s chr3            59068456 90 + 160039680 AGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACTTG
s HiC_scaffold_1 182620033 90 + 233722169 AGTCATGCATTACTTAACAACAGGAACACATTCTAAGAAATGCATCATTAAACAATTTCATCAATTTACAAGCATCGTAGAATATACTTG

a score=4591
s chr3           59068456 184 + 160039680 AGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACTTGTTATAAATGCAAATGGTATAGCCTGCTACATCCTAGATTAGACTAATGGTACAGTTAT---ATACCTGTTATAAGTGATCTGTGGCTGACTAAAACA
s HiC_scaffold_1 31719270 172 + 233722169 AGTCACGTGTCATTTAACAAGGGAGATGAGTTCTGAGAACCATGCTATTAGGTGATTTTGTTATTATACAAGCACTGCAGAATGTACT---------TACACAAGGTAAGGGCTACAGTATC-----TCAAGGTGAT-GTACTCTTATGGGATCATCATTATATTTGATCCATTGGTAACTGAAACA

a score=6801
s chr3            59300459 570 + 160039680 agaACAAGGTTTGGCAAGGTAAAGATGTAGG--------ATGCAGGGTTACAGTCATGCCTCGCATAGTAACATTTCTGTCAGTGGCAGGCTGAGGTCACAGCAA---TCCCTTCAGAGTTTAGTGCAGCTTAAACATGCTTTTACCTTGTGACACCATGGGCTTCATTATCACGATAGCATCATCATAGCACAACGTA---AATGTGTTTGGATGTTGCGGCTG-TAAAGAGACGTATCCCACTGCCTGTTATATAAGAGCATCACAATG-------------ATGAAGTGCTCA--GTACCAGGAAAGAACCATCCCCCGATATGCCTGCTCATTCTCTACGCTCTATATTGTTATTATAGAGTATACTCTTGCCTGTTGAGATATCTTTCAgggctggagatgcacctcagcagtagagcacttgcctgggatgcttgaggccctagcttgaattatttgcactagagggaaagaataaaaCAGTATGTTGTGTTTTATCAGCAGCAGGCTCATGCATCTTGTGTTTTCTGTGTCTCTAAGTTGCATCATTTAC-CATGTCCTTAATTCACTCTTAATTTCATTTTGTTCACCATGGC
s HiC_scaffold_1 100943646 498 + 233722169 AGTACTAATTTTGGATATTGACAGATTTAGGCTCTGATTATGGAAGGT-ACCACAATGCAGGACATAATGACATTTCAGTCAGTGACAGACAACATACATAGTGGAGGTCCTGTAAAATTATTCTGGAGCTGAAAATTCCTATCACTTAGTGACA---------------TAACCATCGTAACAGTGTACCACAGTGTATTACTTGTGCCTTGGTAGTGATGCTGGTAAACAACCCTGCTATGCTGCCTGTTATATAAAAGTATAGCAATGTAATCTGTACAATATGTAGTACTTAAAGTGATAATAAATTACTTTT-----ATgaggttttatatttattatgttaTACTTTGCTATTTCAAAGTACACTCCT-------------TCTTTTA----TGAAAATGCCT-----------------------------------------------TTATT-----------------GTAAAATGGTATGCTCTGTTATACCAGCAGCAGTCTCATACATCTTGTGTTTACTGAGTCCCCTAATTACATCATTTCCTTTTGTGTATGCCTtaatctt-gtttgattttgttcattGTGAC

a score=19604
s chr3            59469666 537 + 160039680 AGAGGGGCC--CTTGCAGCACATGGGAATTTGGTGCACCATCTCTGACCTTCTTACAAATTTCTCTTCTCATCACTCTCTCATAC--------ATGTGC-----TTCAGCATCATGG-TCCCTAATTTC---TGAGTCAGTTAGTTCCCTTGATCCAAATTTGTATCTTTTTTTTTTCACAAGA-CATCTGGATATTTGCCAAATTCAATTACAGGAAAATGAGAGTATGCCCAGTTGCCTTTCATAAATACCAGGCCCAGTTCACTGAGTCCAATAACAGCATCTATATGATACAATTTACAAAATCTCCCCATTGTATGA------ACAAAATAAACGTTTCAAAGCTTA----GTCACTGTTTCATCACCTTAAGAGTACAAGAATTAAGGAAATCTTGGAGCACATAGAGTG----TGCATCACGATTGGGATCGTCAGACTATATCCTAAGCTCTTTTCTTCTATTTTTCACTTTAAACAATTCTAAAGGTTCATGACATCAAATTTTGGGATGA-------------CTCTTTTCCTAGTGTGCACTTGGGATTTAGAATTTTGAGGAAGAGAGAAAG
s HiC_scaffold_1 202203888 581 + 233722169 AGAAGGGTCACCTTCAAGCACACTATAGGTCTGTGTACCCTTGGTAATGATCCTACAAATCTCTCTCCGCACCACCTTGTCATACTTAGATATATGTGCCATCTTTCTGCACCGTGCCTCCATCATTTCCGGTGTTTCAGTTTGTTCCACTCGTGCTACTTTATAGCCTTTCTG---CACAAGGGAATCAGAGTATCGGCCAAATGCTATTTCAGGAAAACCAGAATGGGCCCAGTTGCCTTTCATAAATACCAGCCCCAGTTCACTGACTCCAACAAGAGCATCCATATGGTACAGTTCATAAAATTTCCCTACTTTATAAAAGATGACAAGATCAAAGTTCTGAGACTTAATCTGCCACCACTTCCTCATACCAGGAGTACACGAATTAAGGAAATCTTCAGGCACATAAAGTGTGGATGGATCAAAATCAGGGTGATCAGGGCGCCTCCTGTGCtcatctcttctcttttccttcttcagcCATTCTAAAGTTTCATGATACCAGACAGTCGGGCCACAACTGTCATCACCTCCTCCACTACCTTGGGCTTGAGATTCAGAATTTTGAGGGACAGAGAAAG

a score=8716
s chr3            59473376 195 + 160039680 ACTGCTTATTTAATCACTGCTTCCTTCTTCCTCTGTGTCTGCCTTAAACTACACACCATAACCA-AAATGCCACGGTGAGAGTCTGGCA------------TTTTCACTTGATTGATACTGCACCTCGG-CCCTGTATCTTAGGCTACACTTCT------CTTTCCATTTTGTCAGCTTCTTCCCTCTTAACAGTTGCATGAGCTGCACGTACCT
s HiC_scaffold_1 202204644 215 + 233722169 ACTGCTTATCTCATCACTGCTTCCTTCCTCCTTAGTGTCTGGCTTGAATTCCACATCAGAGCCACCAATGTCACTCTCAGAGTCTGACATGACCCTTCTTTTTTTTACTTGACGACTACTTCTCCTAGATCCTTGCATCTTAGGCCGCACTTCTTCTTCACTCTCAATTTCATTATCTTCTTCACTCTTCTCtgatgcataagttgcacctacCT

a score=5917
s chr3            59473806 349 + 160039680 CTGGAAGAGACAGCAGGCAGGGTGGACCTCCTTGATCCTCTGTTGAGGTTCTTTAGCTCAAGTGGGAATATGGACACCTCCAAGTACTGGGACCCAGACTCAGTCTCTCTCCGGACTACAAGTCATGTGATAGGAACTGCTATTGGCCTATGGTGTTGGATGCTCTACTGATGATTTCTTCTATGACACCTTTGCAGCAATGCCAAGGGAAAGGGGCCCAGCTGGTGTCCTAGT----ATTTTTCAAGAAATAAAGACTTGGGGAAGAAGCTGTACAGGATGCT---TCTAGACATTGTGGTGGTTGGC-AGACCTAACCTTTGCAAAGGTCAGACCTAGC-TCCTAAGATACCACAT
s HiC_scaffold_1 202218292 316 + 233722169 CTAGCGGAGGCCGCAGGAGCTGTCGACCGCCGCAGCCCTCCGTTCAGGTTCTTGCCCTCGGGCGGCGACACGGAGGCCGCCGTAGGCTGGGGCCCAGGCCCAGCGTCTCTCCGGGCCGCATCGC---CGCCAGAGACAGGGGGAGGCCC----CGCGGGCCGCGCCGC---------------TGCCGCCTTCGC-GCGA-------------GGACCTAGCTGG-GCCCTTGTTGGCATTGTTTAA-CGCCGGAGACTTGGGGAAGAAGCTGTACAGAGTACTCTGTCGCGACATAGCAACAGTCGGCAAAACCCAACCGTT----CGGTCGGGCCGAACACCCAAAGACGCCGCAT

a score=4640
s chr3           60186989 283 + 160039680 gagagagacagaaccggagagacagagagagacagagaggctgagacagacagacagacag--acagacagacagacagacagagaAGAGCTAAAATACCCTCTGAGAACCTTTAAGGAAATGATTTCTACATGTAG--CCTACTCCCTGTAATTGGACCTTCACTCTTAACAGCACATTCAACTGTGAGCTCCTCAACAGACTGATCTATCCCTGGCATGAATCCCCTTATGATCTCATCACTACTAAAAGTCCCATCTCTGAACATGGCAACACTGAGGATTAAA
s HiC_scaffold_1 64261294 265 + 233722169 GAAAGAGAATGAGGTAGAAGaatggggagaaaggaaggagcaaagagagaaagagagccagGGACAAGGTGTCCCCTTTCCAGGGGATAGCCAAAGT--------------------GACATACTTCCTCCAACTAAACCCCACTTCCTACAGTTT--CCATACCTCCCAATAGTCCATCCAATCATGAATTTGTCAAAAGATTAAGCCATCCATCGGAGCAGAGCTCTTATGAATCGGTTAATTTCCAAATCCCCACCTCTAAACATTGCTTCATTGGGGATCAAA

a score=4123
s chr3           60256797 104 + 160039680 GATGACCCCACTGACCTACTTTCTCTAATCATGCACCACCTGCCACAGTTTCACCAGCCCCTAATGTTCCTTTTAACTATGAATCTAGCAAAGGATTAATCAAT
s HiC_scaffold_1 64261379 104 + 233722169 GATAGCCAAAGTGACATACTTCCTCCAACTAAACCCCACTTCCTACAGTTTCCATACCTCCCAATAGTCCATCCAATCATGAATTTGTCAAAAGATTAAGCCAT

a score=8569
s chr3            60460564 347 + 160039680 TCTAATATAGAAATAAC-------AACTTTTTTCCTTATTGGACATCTGAAGGCAAATGGGCTCACCACCATCTTTTTCTGGAATCAAAACAAAGATGTTTGCCAAGGGTTTTTGATCATGATATGTCTACTCCAACCTCCATGGTCTGATCTGGGGGTAAGGTCTGAACTTGTGCTGTCATTGTTTCTGGCAATATACAGAGGACATGGGCTTCAGTAAGTTGGGCTAAAAGATC----TTGGATTGATTATTCAAGACTGTAT-CACCCAGTGAAATTAATCATGTTAACCTTTCACATAAAAAAATTTTTAAAAACT-TAAGACCTTCAAAAATAAAAAGAATAAAAGAGAAGAAAT
s HiC_scaffold_1 160112579 350 + 233722169 tcaaaaacaaaaacaaccaaaataaaccttttgccTCCTTGGACCTGTGGAAGCATCATGGGTCATAAGCAGCTCTACT--GAAGCCACCCTAGGAAATTTGTCTAGGGCTCTTGCTCTTGCCATATCTGCTCAATCTTACATGGTCTGATTCAGAAATACGGCCTGATCATGTGCCACTAGTGTTTCCATCAGCGGACAAAGGATATCAGCTTCGTTGGTTTGGACTAAGTGATCTTCTTTCTATGGATTATCC---ACAATATCCACTCAATGAAAGAGGCTATGCTAActctttatatgtaaaa-----taaaaattgtaaaagttttattagaaaaaagacaaaattacaacaaat

a score=6315
s chr3            60460583 291 + 160039680 CTTTTTTCCTTATTGGACATCTGAAGGCAAATGGGCTCACCACCATCTTTTTCTGGAATCAAAACAAAGATGTTTGCCAAGGGTTTTTGATCATGATATGTCTACTCCAACCTCCATGGTCTGATCTGGGGGTAAGGTCTGAACTTGTGCTGTCATTGTTTCTGGCAATATACAGAGGACATGGGCTTCAGTAAGTTGGGCTAAAAGATCTTGGATT----GATTATTCAAGACTGTATCACC-CAGTGAAATTAATCATGTTAACCTTTCACATAAAAAAATTTTTAAAAACTTA
s HiC_scaffold_1 189769429 268 + 233722169 CCTTTTGCCTCCTAGAACTTCTGGAAGCAACACTGGTCACTAGCAGCTCTACC--GGAGCCACCCGAGGAAATTCGGCCAGGGCTCTCACTCCTGA------------------CACGGTCTGATTCAGAAATACAGGCTTAACATGTGCTGCCAGTATTTCTGCCAGTGTGCAAAGGATATCAGCTTCA-TAAATTGGACTAAGTGATCTTCCTTTGCAGGATTATCCAGGAC---ATCCCCTCAGTGAAAGAGACAGTGCAAATTCTTTgtacataaag----taaaaaattta

a score=7833
s chr3            60860398 328 + 160039680 AAAAAGTACTGATTTTGAAAACTAACAACTTAAAACAGCcacacacacacacacacacacacacacacacacacacacacacacacacaAATGGTCCACAAAACATTCTTTCCTTCTGAAGGTTTTACGATGCATTGTTATCATTAACCAGTCTTTTACTATTAAATTTAAATGGCCAATTGAGACAAACAGTTCTGAGACCCTTCTTCCACCACTGATTAA------------------------------------------------------------------------CACTG-------------------------------------------------------------------------------------GGGTGGCAGGTGTTAGGGGTAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGAC--TGCCAGTTCCAGCAGCCTT--------------CAATGTAAAGAACGTGTC
s HiC_scaffold_1 100046645 446 + 233722169 aaatggtaTTGATTATTAAAACTAATCATTTAAAACT----------------------------------------CCCatgtattaaaaaaatttatgaaacattctttcattttgaagATTTTATGATACATTGTTATCATTAATCAGTCTTTTACTGTTAAACTTAAATACCCAGTTGA--------------AGACCATCCT-CCACCACTGATTAAGACAGGGTTGACAggtgggcatggtagtacacacttGCAATACCAGTACTTGGCAGGccaaggcaagagaatcactgcaagttcaagtacaccctgggctacatagtgagttcaagcccagcctgaactacataacaagaccctaaGGGAGGAGAGCGATGAGGATGGCAGATGATAGGGATAATATTCATTTAGCCTTCTGAGCTGTCTGGGAAGTCTTGGTAACCTTGCCAGCTCCAGTAGCTTCTTTATCCAGCAAGATAATCCAAAGGAAGTGTC

a score=18219
s chr3           60860700 366 + 160039680 GCAGCCTTCAATGTAAAGAACGTGTCGGTCAAAGACGTTAGATGAGGCAATGTTGCTGGTGACAGCAAAAATGACCTACCAATGGAAGCAGCTG-----------------ATTATCATGAACCATCCAGGCCAAATCAGTGCTGGCTATGCTCCTGTTCTGGATTGTCATACAGCCCACATAGCATGCAAGTTTGCTGAGCTTAAAGAAAAGATTGATCGTCATTCTGGTAAGAAGCTGGAAGATGGCCCCAAATTCCTGAAGTCTGGTGATGCTGCCATTGTTGATATAGGCCCTGGGAAGCCCATGTGTGTTGAGAGATTCTCTGACTATTCTCCACTTGGTCATTTTGCTGTTCATGACATgaggcagacagttgctgt
s HiC_scaffold_1 24579379 378 + 233722169 GTGGGCTTTAACATCAAGAATGTTTCTGTCAAAGATGTTCATTGTGGCAACATTGCTTGCAACAGCAAAAAGGACCCACAAATAGAAGCAGCTGTTTCACTGATTCAGGTAATTATCCTAAATCTTCCTGGCCAGATCAGAGCTAGATACAATCCTCTACTGGACTGTCACACAGCTTGCATTGCATGCAAGTTTACTGAGCTTAAAAA-----TTGATCTCTGGTCTAGTAAGAAACTGGAAGATGGCTGTACAGTCTTAAAATCTGGTTATGCTCCCATTGTTGCCATGGTTCCAGGAAAGCCCATATGTGTTGAGAAGTTCTCTGACTCTCCATGTCTGAGTCATTTGATTGTTCTCCATATGAGACAAACAGTTGCTGT

a score=19616
s chr3           60860706 368 + 160039680 TTCAATGTAAAGAACGTGTCGGTCAAAGACGTTAGAT-----GAGGCAATGTTGCTGGTGACAGCAAAAATGACCTACCAATGGAAGCAGCTG-----------------ATTATCATGAACCATCCAGGCCAAATCAGTGCTGGCTATGCTCCTGTTCTGGATTGTCATACAGCCCACATAGCATGC-AAGTTTGCTGAGCTTAAAGAAAAGATTGATCGTCATTCTGGTAAGAAGCTGGAAGATGGCCCCAAATTCCTGAAGTCTGGTGATGCTGCCATTGTTGATATAGGCCCTGGGAAGCCCATGTGTGTTGAGAGATTCTCTGACTATTCTCCACTTGGTCATTTTGCTGTTCATGACATgaggcagacagttgctgtgggtgtca
s HiC_scaffold_1 22688481 383 + 233722169 TTCAACATCAAGAACGTTTCTGTCAAAGATGTTATGTTCATCGTGGCAAACTTGCTGGAGACAACAATAATGACCCACCAATGGAAGCAGCTGGTTTCACTACTCAGTTGATTATCCTGATCCAACCAGGCCAG-TTATTGCTGGTTATGCCCCTGTACTTGATTGTCACACaattcacatttttttccaagtttgctgAGTTGAAATAAAAGATTGATC-------TGGTAAGAAATGGGAAGATGGCCCCAAATTCTTGAAACCTGGTTATGTTGCCAGTGTTGACATGGTTCCAGGCAAGCCCATGTGTGTTGAGAAGTTCTCTGATTATCCATGTCTGAATCATTTCACTGTTCACAATATGAGACAGAGAGTTGCTGTGGGTGTCA

a score=4097
s chr3            60882718 123 + 160039680 TAATAGGAATATTTTTGATTAATAGAATAACTGAAAAGGTAATAT-------------------------------------TTTCTAGTATTAACATCTGACATTGGGTCAGTATGTTTGCTACAGTTAGTCGACCCATACTGAAATACAC--TTAACAAA
s HiC_scaffold_1 112713123 160 + 233722169 TAAAAAGGATATTTTGGGATTACAGAAAAACTGGA--GATAATATAGTTTCCATATATCCCTTTTTATCCCCCACACAGCTTTCTCTATTATTAACATCTTGTATTGGTGCATTATATTTGCTACAATTAATGAACCAGTACTGAAATCTATTATTAACAAA

a score=10913
s chr3            61225097 483 + 160039680 GGCTCTAGGAAGGAAGGAAA--TTCTAAGCAGAAGCCCTAGTTTTTACAGTGA---AAGTCAATATTTTGCCAAGCCACAAAACCAAGGTGGCTGTAGTGGTTCTTACAGAAAACAGAGGC-----CAGTGGGAGAAAA---GAGTCACTG-------------------------------AAGATGAGAAAAACCACAGATTACAACAGACCTCTCAACTCTGCCAAGCACAGTGGTGGCAGGGTCAAGCAGCTACCAAAAAAGACTTGATTTATACAgtgt----gtgtgtgcatgtgtgtgtgtgtgtgtTGGACACTGAAGACTATAATTGTG-ACAGTCATGTAGCAGCTTATACTAGTTTCTGTTCTGTAGAA--TATAATATATTCCAGCCAAAGA--CTTAATGTATACATTTTTTTCTTCCAGGCATCCTGTTGTAATGTAAATAACAATTTACATTAAATTTAATAACCTCATTATGACTCCTAATCAAACTACCTCTAAAAGAAAAAAATAGTTTTAAAAGAAC
s HiC_scaffold_1 100111429 498 + 233722169 GGATCTGTGAAGAGAGCAAACATTGAAAGCAGAACCTCTGGCCTCTATGGTGATACAGGCCAATACTTTGCCAAACCATAAAACCAAGATGGTTATAGTGGTTCCAGCA-ACAGCAGAAGCTATGGCAGTGACAGAATATTTTAGTTACTGCCAGGAAACAAAGTTTAGCACAGCAAGTCAAAGTAACAGAGAAGCTTCAGGTTACAACAGATTTCTGAATTCAGCCAAGCACAGTGGTG---GGGCTAAGACGCTG-CAAAATAGACATGCTATGAACAATACTCAAGTATGGGCAAAAGAAATTG-------------CTGAGGACTGTATTTGTGAATAACTGTGTAACAGGTTATTTTAGTTTCTATTCTGTGGAAAGTGTAAAGTATTCTAACAAAGGATTTTTAATGTAGATTATTTTTTACACCAAG-----------GAAGTTAAT---------TGGTAAATGTAACAGTATAATTGTGACACTGAATAAATGTGTCTTTATGGAGGGGGAAGAGTTATTACAGGAC

a score=8974
s chr3           61225105 457 + 160039680 GAAGGAAGGAAATTCT--AAGCAGAAGC------CCTAGTTTTTACAGTGAAAGTCAATATTTTGCCAAGCCACAAAACCAAGGTGGCTGTAGTGGTTCTTACAGAAA-----------ACAGAGGCCAG----------------TGGGAGAAAAGAGTCACTGAAGAT--------------GAGAAAAACCACAGATTACAACAGACCTCTCAACTCTGCCAAGCACAGTGGTGGCAGGGTCAAGCAGCTACCAAAAAAGACTTGATTTATACAgtgtgtgtgtgcatgtgtgtgtgtgtgtgtTGGACACTGAAGACTATAATTGTGACAGTCATGTAG--CAGCTTATACTAGTTTCTGTTCTGTAGAATATAATATATTCCAGCCAAAGACTTAATGTATACATTTTTTTCTTCCAGGCATCCTGTTGTAATGTAAATAACAATTTACATTAAATTTAATAACCTCATTATGACTCCTAATCAAACTACCTCTAAAAGAAAA
s HiC_scaffold_1 21081402 459 + 233722169 GAAGAGAGGAGCATCTGGAGGCAGAAGCTCCGCACCCTGTGTTGGCAG---AGGCCAATATTTTACCAAACCACGAAATCAAGGTGGCAATGGTAGCTCCAGCAATAACAAGAGCGTTAGCAGAGGCAGAAGGTGTTAAATACTGCTGGCAGCAAAGCTCAGCAGAAGAGAGCTTGAGAAGTGAGAGAGAAGCCACAGCTTACAACAGACAGCTGAACTCGACCAGGCATAGTGGTGGCAGAGCCTTGCTGCT----AAGAAGACATGTTGTAGACA------------AGGCTCATGAGTATGGACAGGACACTCACGA-------TATGACTATC-TGCAGAACAGGTTATTTTAGTTTCTGCTCTGGAAAGTGTAAAGCATTCCAA-CAATGGGTTTCCATGCAGACTGTTTTCGTAC----------CTGTGTTGTTGATTGC---------TACATGTAACAGTCTTATCATGACActaaat--aaatgtctttaaaaaaaaa

a score=31761
s chr3           61461647 1262 + 160039680 ctttcttttcTTTTCTTTTTTTTTTTTTTGTGGGTGCAGCGAACTTTATTGATGGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTCTGGGATGGAAATTGTG--------AGGGAGATGCTCAG--TGTT-AGGGGCAGAGTTGGGATAGGGCC---------------TCTCTCTTGCTCAGTGTCCTTGCT---GGGGTGGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGTCCACCATCCTGTTGCTGTAGCCGTATTCATTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGCAATGCCAGCCCCGGCATCGA-------------------------------------------------------------------------------------------------------AGGTGGAAGAGTGGGAGTTGCTGTTGAAGTCGCAGGAGACAACCTGGTCCTCAATGTAG--------CCCAAGATACCCTTTCAGTGGGCCCTCAGATGCCTGCTTCACCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCGG--------CAAGTCAGATCCACGACGGACACATTGCGGGTAGGAACACGGGAGGCCA-TGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCAC----CAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACGACCATCACGCCACAGCTTTC-CAGAGGGGCCATCCACAGTCTTCTGGGTGGCAGTGATGGCATTGACCGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGTGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGGCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCATGACATACTCAGCACCGGCCTCACCCCATTTGATGTTAGTGGGGTCTCGCTCCTGGAAGATCGTGATGTGCTTCCCGTTGATGACGAGCTTCCCATTCTCGGCCTTGACTGTGCCGTTGAATTTGCCGTGGGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATCTCCACTTTGCCACTGCAGATGGCAGCCCTGGTGACCAGGCGCCCGATACGGCCAAATCCGTTCACATCGACCTTCACCATTTTGTATACGGGACG----AGGCTGGCACTGCAcaagaagatgcggctgtct
s HiC_scaffold_1  9527063 1312 + 233722169 ctttcctctgtattttttttctttttcttgt---ctcagcAAAGTAGATTTAAAGTA-------GATTAATCATGGATGAAAAAGACCCATCCTTTGTAA--GGAGTCTGTGGTAAAACCTATGCCAAAAAAGGGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAGCAGGGATCCATAGCATGAGACAgtctttctttcttactcttcCTTCTCCTGGAGCTGGTGATCC-GGAAGGCCCAATCCTTGGATGTC---------------------------TTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATT--------TCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGC--TTTTAAGGATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGG---------------------CTCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGCTGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCT

a score=47119
s chr3           61461671 1244 + 160039680 TTTTTGTGGGTGCAGCGAACTTTATTGATGGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTCTGGGATGGAA----ATTGTGAGGGAGATGCTCAG--TGTTA-GGGGCAGAGTTGGGATAGGGCCTCTCTCTTGCTCAGTGTCC---------------TTGCTGGGGTGGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGTCCACCATCCTGTTGCTGTAGCCGTATTCATTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGCAATGCCAGCCCCGGCATCGAAGGTGGAAGAGTGGGAGTTGCTGTTGAAGTCGCA--GGAGACAACCTGGTCCTCAATGTAGCCCAAGATACCCTTTCAGTGGGCCCTCAGATGCCTGCTTCACCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCGGCAAGTCAGATCCACGACGGACACATTGCGGGTAGGAA---CACGGGAGGCCATGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACGACCATCACGCCACAGCTTTCCAGAGGGGCCATCCACAGTCTTCTGGGTGGCAGTGATGGCATTGACCGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGTGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGGCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCATGACATACTCAGCACCGGCCTCACCCCATTTGATGTTAGTGGGGTCTCGCTCCTGGAAGATCGTGATGTGCTTCCCGTTGATGACGAGCTTCCCATTCTCGGCCTTGACTGTGCCGTTGAATTTGCCGTGGGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATCTCCACTTTGCCACTGCAGATGGCAGCCCTGGTGACCAGGCGCCCGATACGGCCAAATCCGTTCACATCGACCTTCACCATTTTGTATACGGGACGAGGCTGGCACTGCAcaagaagatgcggctgtctctggaa
s HiC_scaffold_1 97936679 1206 + 233722169 TTTTGGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA------------TCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAGACACTTCCTCAGCTTAAAGCccctctcttttcatttcttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCC--AGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAA---GCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGAT---CTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATAAA-TCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaa

a score=16847
s chr3           61461833 1010 + 160039680 GCTGGGGTGGGTGGTCCAG----GGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGT-CCACCATCCT----GTTGCTGTAGCCGTATTCATTGTCATACCAGGAAATGAGCTTGAC-----AAAGTTGTCATTGAGAGCAATGCCAGCCCCGGCATCGAAGGTGGAAGAGTGGGAGTTGCTGTTGAAGTCGC--AGGAGACAACCTGGTCCTCAATGTAGCCCAAGATACCCTTTCAGTGGGCCCTCAGATGCCTGCTTCA-CCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCGGCAAGTCAGATC---------------------CACGACGGACACATTGCGGGTAGGAACACGGGAGGCCATGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACGACCATCACGCCAC---AGCTTTCC---AGAGGGGCCATCCACAGT--CTTCTGGGTGGCAGTGATGGCATTGACCGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCA-TGGATGACCTTGGCCAGGGGGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAA----------------------------------------------------------------------------------------------------------------------------------------TCTTGAGTG-----------------------------------------------AGTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGTGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGGCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCATGACATACTCAGCACCGGCCTCACCCCATTTGATGTTAGTGGGGTCTCGCTCCTGGAAGATCGTGATGTGCTTCCCGTTGATGACGAGCTTCCCATTCTCGGCCTTGACTGTGCCGTTGAATTTGCCGTGGGTGGAGTCATACTGGAACATGTAGACCAT-GTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATCTCCACTTTGCCACTGCAGATGGCAGCCCTGGTGACCAGGCGCCCGATACGGCCAAATCCGTT
s HiC_scaffold_1  3814669 1176 + 233722169 GCTAGGATTGGGGCTCGAATTCAGGACTCTGACTCCTTAGAGATCTTGTGAATCATAAAGTACCTCCACCCCCACAGTTGCTATGGCCAGATTCATGGTCATACCAGGAAATAACCTAACCGGAGTACAGTATTCACTCAGAGGAATACCCACCCCAG------------AAAAGCAGA-----CAGTAGATGTCACCAAGGCAACCAGCTATTCCTGTAAACAGCTCAAGGTGCC-TTCCAG--GGCTCCATGACATTTGCTTCATCCCCCTTCTTGAT---ATTATATTTGACACCTTTGTCCCAGAGGCAGATTAAATCTATGTTTCATCAAACCCTCCACAAGCTCGCCACCCCGGGAATGGGCAGCTGGAAGGCCAATTCAATGAGCGTCCTGCTCAGCTC-AGAATAGCCTTGCACACGGCCATGGCGGGGTCAG-GGCTCCAGGGACAG------GGACTGC----------TAACGTTAACTGAGCTTGCTGGAAGAGGGGGCATTCAGAATAATTTCTGGGAGACAGTGATGGCATAGACCACAGCCTTAAATTCCTCCA-ATTACAGAAGTTATTAACAGTTGACACTGGCCAGGTGTCC--ACCCCTTGGTA-TgcaggtggcattgctgatatatgtatatatttttaatttgcaataCTGGGCCTTTCTGCATTCCCATCCCCTGCTTATATGTTTGAAAAAGTGTCTCTCTTAGTTGCTAAGTAGATACATCCTGGGCTTAAATTTCCAGTTCTCCTGTCTCatccttcctgagtgctaggattatggatgtgtgccaccatacccagccccAACAATCTCGAAGCAATCATCGTTCTCATAGTTCTCTCCTGTTCCAAGTATGTGG-CATCGACACAAGTGGTAGGGATGATAATACTTT-GGCTTCACCTCCGAAGCGGGTGCTGCCTATGGCTAAGATGATGAGGAGCACAGCGGATTGCAGCATGTGTTCAACATCG-CATCACT--ATCTGATGCTGGAGGGATCTTGCTCCTGAAAAGTGGAATTGGGATTCTTACAGAC--TGTACTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCACAGTA--TGaagtcaaggaaagagacattgaCTGCTGCAACATCCCCTTC---------AAAAGCAGCCTATGGAACTGG--AGCCAATACAGACAAATTCATT

a score=4653
s chr3            61617780 99 + 160039680 TAGAACCACCTGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTACCCAAA
s HiC_scaffold_1 182620030 99 + 233722169 TATAGTCATGCATTACTTAACAACAGGAACACATTCTAAGAAATGCATCATTAAACAATTTCATCAATTTACAAGCATCGTAGAATATACTTGCACAAA

a score=4031
s chr3            61617783 95 + 160039680 AACCACCTGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTACCCAA
s HiC_scaffold_1 147796900 92 + 233722169 AGCCACTCGTTGCTTAGCAACAGATACACATTCTGAGAAGTGTGTCCTTAGGTGACTTTGTC---ATGAGAACATCATAGAACACATTTATATAA

a score=4078
s chr3           61617783 96 + 160039680 AACCACCTGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTACCCAAA
s HiC_scaffold_1 52067579 96 + 233722169 agtcATTTATCATTTAATGACAGGGATACATCCTGAGAAGTGCATCATGAGATAAGTTTGTCATTGTGTGAACACTATAGGGTGTATTTATACAAA

a score=3642
s chr3            61617786 91 + 160039680 CACCTGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTACCCA
s HiC_scaffold_1 152761415 84 + 233722169 CATGTGTCACTTG---ATGGGGATTTGG----AGAAATACATCATTAGGCAATTTTGCCATTGTGTGAGCCTCATAGAATATACTTACACA

a score=3903
s chr3           61617790 84 + 160039680 TGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTAC
s HiC_scaffold_1 42364571 84 + 233722169 tatcaCTTTATAATGGGGACACACTCTGAGAAATGTGTCATTAGACAGTTTCTTCATTGTGTGAACATCATGAAGGGTACACAC

a score=8116
s chr3           61761679 330 + 160039680 TATATTATAAAGAAAAGAGGTTTACTCTGGCTTATCATTCTAGATCAAGGTCAAGGGACTACATCTGGTAATTGCTTTTATGATATTAGAGCACTGAAGA---ACAGACCATTGTATGCTCAAAGACAGAGAATAT---AGCACTCTAGCCAAAACAGCATTTATGGATGATATATTCTCATGATAGCTTATTAGCAtataaggccactaatgcataagccaattaacacatttgtgagggcaaagccctaatcatctcttaaagatatcacagaggaccagctcctaatatcccaca-aggcaattaaatttcagtatgagttttggagggaacaa
s HiC_scaffold_1 68806518 318 + 233722169 TAAATTACAAAGAAAGAGGTTTTATTTGGTCTCATGTTTCTGGTTTAAGGTCAAGGGGTCCCATCTGGTAACAGCCTTCTTGCTGGCAGAGTACTCAAGGGGCATAGG-GATCACATGACAAGAAACAAGGAACACCCAAGAGACTCATCCAAACTGGCTTTTAGAGCAGAGACA--CTCATGAGATCTCATTAACCC---------------CACAAGTGGATTAATCTACATATAATGGCAAAGCCCTAATCACTTCTT-AGGGCCCCACCTGGTCCCAACTCTTAATGTCTCATATTGGGAATTACAATTCAACATGGGTTTCTGAGGTTACAA

a score=9385
s chr3           62108883 698 + 160039680 aaaacaggaaaacacaatcaaacaggtagaagtcc-ttacagaaaaagaggaaaaaacatacaaacaggtgatggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGTGAGGCAACACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACA-ATCAAAGAAAATGGAAAATGCA-AAAAGATCCTAACTCAAAA----TATCCAGGAAATCCAGGACACAATGAGAAGACCAAGCCTACGGATAATAGGAGTGGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGA-------------AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACA
s HiC_scaffold_1 87508822 658 + 233722169 AAAGCAGAAACACATAAGCAGTTTTACAAGATTCTATTAAAGAAGTAAAggattttactaataaaatgctGGATGAACTTaaggaagaaacaataaa--tagTTAAAGAATTAGAcattatgaaaagaaagcaaacaga---aatacagaatgtGAAGAATTCAGTAGAAAGTATGGTGAGCACA---TTCAGC--CAGTATCAGGACAGACAGCATGGAAAAA----------------------CCGAAGACAAGATCGATGTAATAGATCA--TAAACTGAATGATGTTTGAAAAATGATAACAGGAAAGCTATATCCAGGAGCTGCTAGATGGCTCACAAAAACCCCACACCAGATTTATaggcataaaagaa-------------aaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATA

a score=4608
s chr3            62108992 554 + 160039680 GTAGACACAATAAAGAAAACTCAAAGTGAGGCAACACTGGAGATAGAAACCCTAGGAAAG-AAATCTGGAACC--ATAGATTTGAGCATCAGCAACAGAATACAA------GAGATGGAAGAGAGAATCTCAGGTGCAGAAG-ATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAGCCTACGGATAATAGGAGTGGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAA-----------------------------------------------------------AATTATTGA----------------------------------------------------------------------------------------------------------AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACA-----TACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA---------TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAG-CCAGAAGAGC
s HiC_scaffold_1 139027732 702 + 233722169 gtacaaaaaacaaaaagaacccaACAGGAATC----TTGGAAATGAAAAGCTCAGTAAGTTAAATTAAGAACTCAATGGAATGACTAGTCA--AACAGAAGATGGAATTCTGAGCTTGAAGACAAAGT------TGATGAATTATCATACAAGGaacat----------aataaagaaaa----agatgtcAGAGGAAT-------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAATCAGGGATAGGGCCTTGGCTCAGGGTTAAAGCTCCTGTGTAGCACTGTAAGGGCCAGGGTTCAATTCTTAGCAAAGGTAAGAGGGAGGAGGGATGCAGGGAAGGAGGgatgggaaaggaggaggagaagaaaaggaggaaggaaaggatgggtggatgggttCTGTAAAACAACACCAGAAAACTTCCCGAACCTTGGGAAAGA------TACAGACATCCAGTACAGGAGGCATTTAGAACCTCAAATAAGCATGACCAGAAAAAACTCTCCCCACATCACTTTACAGTTAAAATGTCAAGAGTACAGAATAAGGGGAAGAGTCCTGGAAAATCCAGGACAGCAACAGCAAA---TCACTTGTGCTATGACAGGGCACCTATCAGAGTAACTACAGGGTCCCCTGCAGAGACTCTTAATGACCAGGAGGGC

a score=16975
s chr3           62108995 2023 + 160039680 GACACAATAAAGAAAACTCAAAGTGAGGCAACA---CTGGAGATAGAAACCCTAGGAA---------AGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACA----CAATGAGAAGACCAAGCCTACGGATAATAGGAGTGGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCC-AAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT--AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACA--GAATGCCAACTTTAACAACAAAAA-TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAA-ACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACAT------TCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACA-----AATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGG---------------AAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATT-CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAG-GTCTGAAAA
s HiC_scaffold_1 89593996 1836 + 233722169 GATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaaga----aaagataaacg-gGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCAtggaaaaag-------------------aactaaaaatg----aaagattaagaataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACT-AAAGCATAAGCATCTATC--CATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCT-----CATTTAA-AGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT-ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAACTCA--TGACAAGT------------AAGCCAGCattccagaaaatattta------aatatcacaaaGACAATGAGTATAAGACCATGTAAAGTATA--Aatttaat------tggaa---aaataaagacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAA-TCTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGATCT-----GGAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaaca-aaaatctttaagt--GACAAAGAATGCCACTACAC-ATTGTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGG-------AACACAAATGCCTGCACATGttatttcataaaacaatttCACTTGAAAAGACAAACACA--------TCCCCAAAAATATAGTAGGGGACTTCAACAC--TATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT----------------------------TTTAAA---------------------GTTCTATTGCATCACAatggaatgaaactagaaattatta--ggaaaaaaattacatgaa---------tatGCTGAAATTGAG---------TTAAAATGATACATTTGTAAATAACCAACAGACAACTCAAGtaatcagaagaaaaatt---ttaacgtcaaaaattaaatgacaaatcAAACACA---TGTCATAATCTGAAGTAGATA----------TTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAA----AAGCAAGAGTGGTTCCCAAAAAATAACCTAATGGTa---ctaaag-----agaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAAA

a score=18422
s chr3           62109154 1164 + 160039680 AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAGCCTACGGATAATAGGAG-TGGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-------GAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA--TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAA--ACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAAT-------------AACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCA-ACTTTAACAACAAA-----------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGA-----------------------ACTCT-------CAATT-CTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGA
s HiC_scaffold_1 67576299 1162 + 233722169 AGACAAAATAGTGAATAacaataaag---aactcaaagaagctaagaagaaaaatagacaataaGAA----AAGACTAtg--caacagctgctagatgatagCACAGAT------------GAATTCACTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagttt------aaaatacaagtaactgaca---tttataaaacattgaaCAATTATGATAAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTTGG-ATGATATATGAGTGCTAAATCAGCTCTAaggaaaatacttaagaatattctcaacagaaacaa--taagtcagacacagctaaaatcacagaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccgg--aaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaa

a score=27397
s chr3           62109166 1972 + 160039680 AAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAGCCTACGGATAATAGGAGTGGATGAGCATGAAGATT-----TTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAA-----GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAA----ACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGA--------AAAAAACCAATACAA-GAACGGGAACAATGCCCTAGAAAAAACAG------------GAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAA----------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGA-CACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAG-----GAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAA-CAGGGACACACTGAAACT-AACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCA--CAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGA--AGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA-----------AGGAAGCAAATT---CACCCAAGAGGAG---------------TAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACT----ATTC---------------------------------------GAAGAATTAACCAAACGA---GGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTA----ATTAACAAAAT---CAGG--TCTGAAAAGGGAGACATAACAACAGATCCTCAACAAAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATAC-AGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCA
s HiC_scaffold_1 91695044 2018 + 233722169 AAAAACAATAACATACAAACT----ATATCCAACGACTGTTAGATGACATAAAAACAACTAATCTATGGttaattgaaaaag-------taaaaattcagaatacagaacaaatggcataaaaatccATTTGTTGAAATAAT---AACAAACTTTCCAAATAACAGGAAAGAATGTAATATAAACAGACAAATAGTGAGGCAAACAGGATTCCAAATAACCATGATAAAAAAAGAACCTCTACATGACATATCATAGTCAAAACCCCGGAAGTCTAACACAAGAACAGAAACTTAAGAGCTGTTAGAAAAAAGCAATTAATCAATTATAAAAGCAAAACCATTAGAATTagagcagatttctcaacacaaaatataaagatCAGCAGAGCATAaa-----gtgtttcaaattttaaaagaaga-aattttcagCCCAGACTaatatattctgcaaaactatctttcaaaagtgaTGGAGAAATGTAATATTTCCATAGTAAAGAGCACCTAA-----AAAATGGATGCCCACTAAATGAGCActcaaaaaaattcttaaagattTCTTAGACAGAGACAGTGAAACTAACAATAGCAAAACACCTGGTAGAATGGATGTACCAGGTAGGATGAGat-----attaaacagaagagaa---------------agaataagaa--tTAACAACTAAAAgataatgcaatgacaggaataagttaATATCTATCAATAATAACTC--AATGTGAATTGTCTCAATTCTCcatataaaatacacatattgGCAGAAtgtttcaagaaacaaaacccaacaacattctgtatatataaaacatatgtaacacaaaaaaaaaactcataaaataaaagtcaaaggatggaaaacagtattctataCAGTGGGAAACCAAAAAATATCAGGAGTAACTATTCTATCTTTAAACAAAGTAGACTTCCAGCCAAAATTTATCAAAAGAGGCAAATCATTTCACTGCACATTGGTTA---GTGAAACGActcagaagagagagagataataattattaata--tatacaCCAAACATTGACACACTTAACTTCCTAAAATAAGTACTActagacataaaagatcaga-------aaacacaattatGTTGGAGGATATCAGTACCCTGCTATCACaaa-----agatcaactagaccaaaaaaaaatcaaagaaatgtcAAAATTGGACAAAAGTTC--Aagcaaatggatttaatagatatctaaggaatgttccatccaaaaacaaa---acatacactcttctcagaagcacatggaactttctccaaaatagacattgtattagtaaataaaacatg-ttaagtaaatgcaaataaattaaaattttatcctacatattatcagatcatggaccagtaaaactagaaatcaatggcaaaataaaa-aacagacattatgcaaatacatagaaatgaaacaatac---actCAGATTGAGCTgagttacagaagaaatcaaggaagaaataagac---------accCTGGAATTAAACAATGTCAATAAAACAATTAGAATTTATTAGACACAATGAAAA---GTTAAAGTaggaagtttatagctgtgaatgctcACAGCACCAAAACTGAGTGAGtttctaaataaataacctaacagTACACCCCAAAGTCCAAGAATAATGAGCTAGTACATGACGAAAATTGTACAGATCAGAGCAGATATCAAATGCAATTTGGaccgcaaaaaaaaaataaaa-caggagcacgatgagagaagaatgaagaagaagaaTGAAGAATGCATGAAGgatggcaggaggcaggaggaggaaagaaagaaaaaaggataaagcCAATGAATTAgagttgattcttcaaaaaaatttttaaaatagtcaaacttatggggaaaa-aatgaaaataaaaaaggcaaaaaccaCAACACATTGCCAAAATGTATAAGATTATTAACAAtgagttatattta-----ttttaataagttgGGAGAATTCCAAAGAAATGTATATATTCCTTTATAGACATGAAGTACAAAAG-TGGATCAAGACTGTATACAAACCCTGAGTAGTCCCA

a score=7233
s chr3            62109265 699 + 160039680 CAACTCAAAGGACCAGCAAACATC---TTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAG-AACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGA--CAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAAC-------CAATACAAGAACG------GGAACAA---TGCCCTAGAAAAAACAG-GAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAA---AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCT
s HiC_scaffold_1 229213909 685 + 233722169 caacacaaagcat----AAACATCCTGTTTACACacataataacagaaaattttatgAGTATGGGGAAAGAATTTATCGTACAGATGAGTGAGGGCAAAAA----CCAAATATTTATAGTCAGAAAAAAGGTTTATCTTCAGCACATTCTTGGCAAAATCCTAGGAGT-CCAACAAAGGACAGGATCTTAAAAG-ATTTAGGGAATAGTAACAGCTCATTTATAAAGATAAACCTATTAGAATTACAGCACATTTCCAAAGAGAAACCATAATGGCCAGAAGGGCTTGCAGAGAAGTGTTTTAAaccctaagagaaaaaaaaattacaaatcacATTGATATTCTCTGCAAAGatatctttcaaatttgatg--aCAACAAACACATTAGACAATTTAggaccaaaccagca--------ctcca------aaacaTTCTGAAGGGT-GTCTTAGAGAAGGACAGGCTTGCAATGCCAAAACGTTTAGTGAAATGAATGTGTCAGATAGGGGTCAGTTAAGGTGA--CTGCATGAAGC--AGAAGGAGCC--------GAACAGACT--CAGCACCAGGTACCAGTGCAGTGACAGGGCTCAGTCAACACATTGCAGGACTAAGTCTCAAAATGAATGGTCCCAACTCCCCACTCACAAGACACGGATCAGTATACTCAACCAAAACCCAAAACTTAACAATGTGTTGAATGCAAGAACTACATTT

a score=14611
s chr3           62109267 1086 + 160039680 ACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAA-------CATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCT--CCACGAATCCAGCCCTTAAAAGGATAAT----------AACAGAAAAAAACCAATACAAGAACGGGAACAAT--GCCCTAGAAAAAACAGGAATGTAAT-----CCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAA--AAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAA-TGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTG----CACTTC--ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGG
s HiC_scaffold_1 95665966 1059 + 233722169 ACCCAAACTACCAAAATTTACTCATAAAAAAGtcat-------aatttttcaaatgtaaggaaataattcaatattcAAGTACAAGAGGCATGTAAGATCCCAAATAGCCATGACTACAAAACTACTTCTCTACCCTCCATTATAGtcaaaaaaaattccagaaattgaac---ataatgaaaaaagttgaaaaattgttcaagaaaAATATCATGTAACCCATAAAAACAAGCCTATCACAATAACAACAAATTTATTAGCACAAATTTTAAAGATCTAAAGAACCTGGAGCAAAAATTTTCAAGCCTTAAAATGGT-----TGTCATCCCAGCCTTTTA---CCGTTCAAAT------------TGtatgaagaagtaaaaat-ttaCATGACAGAG--AAatccaaaagaaattcatgaccactaaccTAGTACTGCATAAAATATTTGAGATCCTAGACAAAGAAAAGGAGACATTGGCAC-----CAATAAGTCCAAAGAAAAGTATTCATCTAATGGGGAGACCAggtaaacaacagaaaaaata-----aagaacaaattagC-ACTGGAAAAACAATGCAATGACAGAATCtagtaaatattttacaataataaCTATCAACTTTAACATTCTTAATGCTTctatcaaaagacacagactggca-----gctggattaaaaaaatctaatcaTTTGCTGCTTTTTAAAGACATATCTCACacataaataaacacaaaaactgATAACTGAAAAAGTGGAAAATGTTATTCCATGCAACTGGAGTTCAAAAGCAAGCAgaagtagctattttattttcagacacagCAGAC-CCAAGCCAAAACTTATCAAAAGAGACAA-GATGGTCACTATACattagaaaaggaaatgagtcaataggaagagataataattgtAAATGCATATGCATTGAATGTTGACACACCAAACTCCATAAAACAAAC--CACTATACATAAAAGGATAGACAGGCACCATCTCAAACACAAT-------GAGGTCATCAACATCATATTCCCACAAATACATGTGTAAACtagacaaaa--caagcaaagaaatgtCAGAGTTAAGGGGAGGAAGGAGAACAATGG

a score=18755
s chr3           62109271 1547 + 160039680 AAAGGACCAGCAAACATCTTCAACAAAATTATTG-AAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAG--AATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT-----------------------------------------------------------------------------------------------ATACAGACACTAAGAGAACACAAATT---------------------------------------CCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGG-AGAAACCAAAGTA-TTCCACGA----------CAAAA---CCAAA-----TTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACCA-ATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTA---ATCCCTC----------ATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAA--CAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGC-------TGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGG-AGACTTCAACACACCACTTTCATCAATGG-------------ACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAAT----------------AACAAAAAAAAATAATA--GAAAGCCAACACTCACG------------TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAA------GAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAAT
s HiC_scaffold_1 55628357 1716 + 233722169 AAAGAggcataaaatttatttactgaaataatagcaaaaaaactTTTTGAAGGTAGGGAAATAATTCACTATGTAAATATGAGGTATCTA-AAACCCCAAAATAGCTAGAGCTAGAACAT---CTGCTCTTGACACTtcctaatcaaaattccaga--aatttaagGAAATCagcaaatattaaaagctgctaaagAAAAGTAGCAAGATACTTATAAAAGCAAGCTTATTAAAATTAtgacagatttctcagcacaaatttTAAAGGCCAAGGGAGCTTAGAATGAAGTTTTCAAGCCGTAAAAGAAAGCAGTTGTCCAGGAaggggtataactcagtggtacagaacCTGTCTGGTAAGTGGAAGGTCCTGCGTTCTATTTGCagtacaaaaagcaaaacaaagcaaatcaagcaagcaagcaaacaaacaaacaaataaaaacgcTTGTCAGGCTAAGCTACTCTAGCCCACAAAATT---AACCTCCAAAACTGACAGAAAATAAAGCACTTTCATGGACCTTTGTCCCAAAGGTCCCAAAGAATCCCAAAGAACTACATGCCCACTAaaccagaatttcagaaaata----tataaagGATTCATACACAGGGAGACCATCAGCACCAAAGAATCTCCCAGAATGTATACAACTGTCTGGAAGAGTAGTTAAATAGAAAAGGAGGGCAAAACCCTGACACAGTAAGCATTGGAAAAATGCTGGAATGATAGTACCCAGTAAATACCTTAC---AATAATTCTCAGTGTCAGTGATCTTAGCTCCACAGTCAACAGACTGAGACTAGCAGATTGgatcaaaaatcaaaatgcaaccatatacacacacatatgtacagtAGATACActttattcaaaaggaaaataatagagtAATTGTGGAAGGCTGGAAAATGATACTCTATGCATCTGGGGCAATAAAGCAAGCAGGAGGAGCTATCTTATTTTCAGACACAACAAGCTTTAAGCTAAAACTTATTAAAGAC-ACAACGATGGATACTACATACTGGTAAAGGGAACAGTTCAACAGAAGAGATGAT-AACAGTAAATATCTGAACTCTAAATGTTGGTATGACCAATGTCATT-----AACACTACTGGACCGCAAATGACAGATAGACACCAGTACAACCATAGTGGGTGGATTTCAGTACACTA-----ACCAATAGATGAAAAGTTAACACAGGTCAAGTAGATGAAAAGTTAACGAGGAAATATCAGAGTTTAATCATACCATTAAGTAAGTGGACTTGACAGAAATCTACAGAGTGTTTTATCCAACAACAGAATG--------------CAGCA---CGTGG--ACTTTTGCTAAATAGAACATACGTTAGGCCATAAAGCATGCCCAAATACATACCAAATAATGAAGA--ATCGCATGAATTCTATTGGATCACAATGGAGTAAGAgaga-aatcaatggaaaaacaaacaacaaacaaaacaaaacaacaataaaactcCACACAGACATTACACAAACACTGGAGATTAAACAATATGTTACCAAATAACCAATGGATCATAGCAGAAgtcagggaagaaataaaa-------aagattctaGGATCAATTGACAATGGAAGCACAATATG-CAAAACATAAGGGACTCAGTGAAACAG--TCTAAGTGGGAAGGTTATGGTCCTGAATGCACCCGTTAAAAAAT-TAAGCCACcctaaataaataacataatgacACCTGCAgcttttacaaaacaaaagaacccaAT

a score=25242
s chr3            62109271 1663 + 160039680 AAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAA--GCCTACAGAACTCCAAATAGACTGG--ACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAA-----AAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACA---TTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAA---GTTATGAA--ACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAG-----------AAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291805 1557 + 233722169 AATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgc-AAATAAATG-------ATATACAGGGACtggatttaaaatgcaaaataagcaTATAGCCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCAAT--AAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTACTGCTAAATCAGTTTTGCAAA----ACTTACTGAGTTTTGCAAAACTTACTCAGGAG---------------AGCATGAAAAGGAGTAAA---TCTTATTAAA-----------AGAGTCAATAAATCAGAAT-CAAAC---AATCAATGAAATAACAGGGAGCAATACATACCATTCC------------AAC-----TGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTCACAAA----CAGGCTAtctaaa----aaatcagcaaagaaacaattgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGTAAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACG-------GTTAGT-----------AAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAA-TCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaattt-------aaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=30890
s chr3            62109282 1875 + 160039680 AAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGA----------AAAGAAATTCCTCCCGACAC--ATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAA----ACC-----AAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGA-----AAAAAACCAATAC-AAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCC------CTCATCAAACCTAAAAGAAGACAGCCAC-AAGAACAGAATGCCAACTTTAACAACAAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAAT-ATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACT-GAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCCTCAACAA-------------------AACTGGAAAACCT---------------GGACAAAATGGAAAAATTTCTGGACAGATAC-AGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAataga
s HiC_scaffold_1 135385634 1748 + 233722169 aaaactattcactgaagtaatggcagaaaacttatcaaggataaaaaatatttaacatat--agataagtgaggcatgcaCAACTCCAT-TAGCCATGACCaaaccccctccaaaaaaaaatctatcctaAAGCCTACAATAgccaacattccagaaattcagtccaagaacagaatattaaaagttgttaatgaagagaaacaaatcatttataaaggaaagcctatcacaATTACAGCACATGTCTCAATACAAACCCTTAAATCAAGGAGATcttagaatgaagtatttcaagccctaa-agaaAACAGtgtccaacccagattaatgtaccctgcaaaactatctttcaaaatgtatgaagaaataagatatgtccatgacaaagaacacctgaggaaattcgtGAA---------CACAAAACCAAcattccaaaatgttttgaaggacattcaaGAAAGAGATACTAAGGACT---ACAATTCCATTAATCCCAACAGAATG-AGTCCACCAGGCACAGCAAATAATTATGGAGAgaggaattaaaaacagaaca--------aacaggaaaataacatgacaaggataaatcagtGTATATCAGTAATtagccatcaatgtaaatggtctcaattcaccaaccaAAAGAAGCAAACTGGAAGAAtgagtcaagaaacaagattcaacaatatgtgGCAttccagaaacacatttaactcaaaaagaaatacatagactgaaaatcaaaggatagaaaaca-tacTCCATGCAACTGGAATCTGGAAACAAGCTGAAGTAGCGATTTCATTTGCAGATAAAGTAGGTATCAAGGTAATAATCATCAAGTGAGACAAAGAAGGGTATTATATTCTTGTCATA-------------------------------------------------------------------TAGTCAAATAAACT---------------------------------------------------------------------------------------AGACAAAACattaacaaagaaataccagaaatcaaccaaactt-tttaacaaatggacttagtagatatctataaagtgttccaccccaaaacatcagaatatacatttttctcagc---------tacaCTGTCCAAAATGGACCACACACTAGCTCATAGAATATGCCTAAGTAATggcaaaca-aatgaaattatcccatgcatattatcagaccatagtgtaattaaattagaaatcaatggt-aAAAGGAACCatgaaaacttcataaacacttggaaattaaataacacccttctgaacaaccagtgaatcacagatgaaattaaagaaaaaaacaga--ctttttaaa-attaaaggataatgccagtacaacctACTGGAACtaatgggatacaatgaaagcaatcttacAAGGGAAATGTATAGAGATAGATTTCCACACTAGAAACCAGAAG-GAACGCA----AATAACCTAATATTGTaattcaagcttctagaaaaagcaCAGCAAGTCAAGTACAAAGCTCACATGAGGGAAGAAACTATGAAGACTGGAGTAGAAgataatgcaattgaaactaagaaaacaacacaaagaatcaatgagtc-aagagttggttctttgaaagattaaataaaattggaaaacccttagccaacctcatcaaaaaggaaa--gaaaagactcaaattcatgaaattagCAATGGAAAGGGCAATATCACAATGGATCTTGTGTAAATTAAGATCattaatatctactttgaaaacttaatgaggcagaaaacagaaaatatggaaacattcctagatacatatgaattaccaaagctgaatcaagatgatacaaagagtCTAATTAATCCAttttcagtcaatgaaattga

a score=4762
s chr3           62109289 137 + 160039680 TTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAAC-ATCAAA
s HiC_scaffold_1 59227083 138 + 233722169 TTCAATAAAGTAATAACAGGAAACTTCCCGAATATTGAGAAAGATGTGGACATCTTTGTATAGGAGGTTTACAGAATCCCAAGCAGACAAGATCAGGAAAGCGCTTCACCACAGCATATTCTAGACAAAACTATCAAA

a score=10074
s chr3            62109296 768 + 160039680 AAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT-TATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTA-TTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGA--------AAAAAACCAATACAAGAACGGGA-ACAATGCCCTAGAAAAAA-----CAGGAATGTAATCCCTCATCAAACCTAAAAGAAGA------------CAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCC--TAATATCT
s HiC_scaffold_1 129057714 743 + 233722169 AAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATAGAAAAAAACCCTGAAGTCC------AACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCA--GCAAACCCTAAAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaa-taaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGT-----TGAGTTAAGttaagaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTT---TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta------aaattaAGACtcaaaaacagtattccatgcaacatgaACCTAAAAATAAGTAGGAGTTGAcatacagtgatacct

a score=31767
s chr3            62109305 1810 + 160039680 AAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAA--GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACT--AAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAA-----CCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACC---AATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGC-CACA----------------AGAACAGAATGCCA--ACTTTAACAAC----------AAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCT---CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAAC-----------AAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAA----------ACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAAT-TAAATTCTTTTTAGATTTTAGAAGAAAAAG---AAGCCA---CAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGA--GGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACA-------------GGGACAAAATCCTAATTAACAAAATC-----AGGTCTGAAAAGGGAGAC---------ATAACAACAGATCCTCAA----CAAAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATACAGGTACCAAAGTTGAATCAGGATCA
s HiC_scaffold_1 171883955 1801 + 233722169 aaaaaaactttccaaatatggaGAAAGAG--TCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAA-GTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc-----aaactagcactccaa-----aatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTC-------------AAATG---------GTCCAACC-AAATGACTACAGCATACAGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaataggaaaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagaga---aaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCCAAATAGAAAACATACTCATCTCATA---------AAGGCATACTTAAGT--ATTCATAAGGAgtcaaaattattccatgcatac-aTCAGGTCATAGTGCA-TAAAACTAGAATGCAGt-gccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAA--------AGCTACTAGAAGTAAACAATTATGCCATTCCAACACA-CAAGAACTTTGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaa--acagtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaaaggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaacaataaacaaacaagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttctaaaagattaaaaatggagATTTTAGAATAAATGAATAGGTTCTCAGATAACAGAAATTATCAAAAATGAAccaaggcca

a score=7514
s chr3           62109343 706 + 160039680 AACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAA----------ACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGAT-------AATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATA-----ACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG--TATGAAGAAACAAGCTGGAGTA
s HiC_scaffold_1 66783315 610 + 233722169 AAGACAAATGAGGCATGTAGAACCCTAAACAGTCACAATCAAAAGAGAACCTCTCCACATAACATCAtagtcaaaataccagaaattcagtacaaggacagaat-ttaaaagctgttagagaaaatg----aGTAAT--------------CCATTAGAATTATGGGAGCTTTCCCAATGTAGATT----------------------CATACATCTtaca----------------------------------------------aaagtatctttcaaaaatgatggagaaataaggaatCGTCATAACAAACAACTCCtttaagaaattca---------tggccactaAACCAGTGCTCTAAAAAATTCTCAAgaatatcctagaaaga----gacaacaaAGCCAGCAAGGCCC-AAAAAATCTAGTAGAATGAGTAC--ATCAAG--TAGGGTGAAGCAG--AAGAGAGCAGAAAATCAAC----AGGATAATAATACATTGACAGGAATACATTCATACCTTTCAGTAATTACTCTCCATGTCAATAGTCTTAATTCCCCAGTCAAAAAACACAGAATGGCAGAATCAATCAAGAACCAAAGCCCAGTGTTATGCAGTataca-aaaatgcatttaata-aaaaagaaacacacagattaaaaatcaaagg-------acaaTATCACATGCAATGGGATCCTGGGGAAAAAAGTTGGAGTA

a score=20081
s chr3           62109847 1153 + 160039680 CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA----AGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGT-TCTCATCAAAGGTAAAA--TCCTCCAGGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAT--------------------GGAAACAGA----------------------------AACTAA--------------------------------------------------------------------ACAGGGACACAC---------TGAAACTAACAGAAGTTATGAAAC--------------------------------------------AAATGGACCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAA------GAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAA---GAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAA
s HiC_scaffold_1 42973449 1254 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTTA-----TTAAATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagaca-GAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaact-atgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAAT-------TTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaacaaaaccaaa-----ctaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAAT------GGAACagactaaaaaacaaaatgcaaggtaAGTGAAAT----AGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAA

a score=14868
s chr3           62109969 924 + 160039680 AAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTC--CAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAAGAAGAACT
s HiC_scaffold_1 87165018 864 + 233722169 aaaaaaat---cactgagtaaaaatcagagacagaaacaaaatt------aCATATGATGGGAACATGGCAAGAAGCCAAAGTTGCTATGCTAATTTTACATAAATTGGATTTCAAGACCAAACT----AGAAGAGGCAAAAAAGGTCACTACCTATTGGTTAAGAGAACAGTTCAACtagaagagataataattat-----tCAGTGTTCACTAAACACTAGAAAGCCCAACTTCATAAAA------CTACTGGATATAAAAGGTCATAT--AAATGCAAACACTTAAAATGGGAGACC--------CTACTGTCATAAAT----AGatca-----aaagaaat--atcagagttgaactaAACCT-----------TTGAATAAATAGGCTTAATAGGTATCTATAGAGTGTTTCACCAAAAAGCAACAGAATGCATATTCTTCTCAAGAGTACATAGGACTATCTCCAAAATAGGCCAAGTGCTAGCCCATAACATTCAcataacaaaatgcaaaattattgaaattattccatg-----tatgagatcatagtgcaatgaaactag---aaaacaaTGGGGGAAAACACCAGAAATTATCCAAGCATATGAAAATTAAGCAATGACttcttgaataatcaataggttgtagaagaaatcaa-agagaaattaGAG--TTCTTGGAATTAAGTAATAGTGCCAG-TACAACATATTGTAACCTGTGGGCCACAATTAAAATAGTGTTTAGGGGGAAGTTTATAACTATGCAcatccacatcagaaaa--acagtgaGTCCAAATAAACAGTGTAATGATGTATCTCAggatcatagaaaaaaaaaagaacaaccaaATCTAAAGCTAATACAcataaggaaattataaagatcaggacAAAAACTAATcaagactaaaaacaaaacaaatt

a score=6810
s chr3           62110000 327 + 160039680 CTGGAAAACAATTTTCCAAGCAAATGGTAT-------------GAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAA
s HiC_scaffold_1 63812792 323 + 233722169 CTGGAAAGTGAT------AGAAAATGATATTTCTTTGGAAACCAAAGAAAGCAGGTGT-GTAGCTATACTCATATTACACAAAGTAGATTTTAACTCAAAAATAGtaaaaggagataaagaaagtcattatataatgatagaggggaaaatccatcaagagaaaa----aatactatatatat------ccAACATCTGAGCAACTAAATCCATAAAATAATCGCTAAAATATCTGAAGGGAGA-GTTAAACTACAATGCAATAATAGTAGGGGACCTTAAGGACCCACTTTTGATAATGGACAGATCATCTAGACATAAAATCAATAAGGAAAAATTGGA

a score=12282
s chr3            62110180 841 + 160039680 TACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACA-ATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAA-CTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAA--ATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTT---CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGC-CACAACGTACCCAAACCT--TTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAA-AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGG
s HiC_scaffold_1 154982297 788 + 233722169 taCTGGAGCAcccaaattaataaaacaaatactgcTGAC-CATGAGACATCAATTGAATACCAAGAAGATCATAGTTGAAGAACTTAGTAC-CTACTTTCACAACGAgtcagatcaactaaacaaaaaattcagtaaaaatatATTAGAACTGAATGTACTTTTGAA-CAGATAGACTTAATAGACAACTATAGAATGTTACACTGTAccacaacagaatacatattcttctcagcaagACACAGAGCTTTCTCCATTATAGACCACATACT-GGTCACAAAGCATGCCTAACAAACTACAAAAGTATTGACATCATCCAATGTTTACTATCAGAACATTGTGCATTGAAAGTAGGCATTAATCACAGAAAAAACTGTAATTTATAAATACCACT----TGAAAAC--AATAACAATCTGGAACACAAAG------TGGT----GcataaaaaatcaaaggaaatgaaTAATTTCTGGAATC--AAATAATATGAACTGTACAACACACCAGAACTTACCAGAGATACAAAGAAAGCAGTCTGAACATGGAAACATACAGCAATCAGTGTTCATACTACAAAACTagaatgagcccaaataaataatcaaatgatGAATATCAAGATActcaaaaatgaacaataaaatgaatttaaga-----------------------------atgGAAGAAATTAATGGAATCGAGActaagaaacaatat---aaaaatcagtgaatcaaagaa------cttttgaaaaataaataaaatatatggccACTCAGACAaacttaccaaaag----aaagaatgaatcgt-atcaatgcaattagaattGAAAAAGG

a score=9493
s chr3            62110242 554 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGA-------------------------------------AACTAAACAGGGACACAC---TGAAACTAACAGAAGTTATGA-------------------AACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCC---ACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAG
s HiC_scaffold_1 162323312 576 + 233722169 acacaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGAT----GAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaatatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAAGCCATACAGCTTAGTTATatcaatac-----------------aaaaaattaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaa-aatcaaaggc-aagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacag-aagaaatcaaatacttCATATAGTT----AAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatt-taagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGG

a score=17122
s chr3           62110242 916 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAA-CAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACT--CACGTGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAG--------AAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGA--GAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATT-CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATT----AGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCC-----------------------------------------------TCAACAAAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATACAGG-TACCAAAGTTGAATCAGGATCAAGTTG--ACCTTCTAAACAGTCCCATATCCCCTAAAGAAatagaa
s HiC_scaffold_1 72973774 943 + 233722169 ACACAATTGAagtgggggaccttaataccccatacTTACAAATgcataaatcaactagacaaaaatatcAACAATGAAATGATACAATTAAACAtagcctgtgaa-caaatgggcttggtGAATGTCTATGGAGTGTTTCGTCACAAAACAGAATTGTATACATTCTTGTCAGCTGCATATAGGACATTCTTCAAAATCAATCACATATCAGGCAACCAAACATGCTTTAGTAAATGTagaggaattgaaatcatcctatgcatattatctgatcatagtgcaatgaaagtGGAAACCAAC-accaaagaaaatcacaaaaa--ctacattaaaatatggaaatgaaaGAACACTTTTCTGGGCAATGAaa---gggtcacagagaaaattaaaaacagaattaaatagtgtatata-tttaaatgataatGATCATTTAAATGTATAACACACTGAAACTTATGAGACGCAATGGAAGCAGTCCTACAAGGGAA-----------------CTTCCACATCAGGATAgcagaacaagctcaaataaccaacctaatgttgaacttcaaatttctagcaaaa---gaacaaatcaaacccaaagcttgtaggagagaggaaattgtaaaaataagagtagaaattaatgcaatacagactaagaaaacaat--aaaaactcaaTGTATTGaaaa----gttctttgaaagaataaataaaattgataaaccaccATAGAACATgatcaaaaagaggaaaggaaaaacaaatccatgcaaatagaa-------taaaaaggagaaaatcaaaatggattccACAGAAATCAAGGAGATAATTTATACCTACTATGAGAACCTATATTTcaataaga-tgaaaaacacagaagaaaaggatagattcctagacacaatTAGATTTTCAAAGCTAAATC---accaaatagaaaaattataaataacctgatgtcagccaatgaaattgaa

a score=4264
s chr3           62195120 280 + 160039680 aaTAATAACAATACAAGCTAAAAAAAGAAAAGATACTTTAATATTTATCTAGAAGGGAAAAAATACTAGCAGCTGGTCTCCCCAGTTATCTAGGGATGTTTTAGTACTGTGGAG-TCAAA--------------------TAAAAACATAATA-----TCAGGTTTGGTGGCTTATATCTGTAACCTTAAGTCATGGAAGAGGAAGGGAAGGAAGACCAAAAGTTTGAAGCCAGTTTGAACTTCATAAGCGAAAC-AAACAAACAAAAATCAGAGTGAGGAAGAAAAGAAGGACAAATGGGACATGG
s HiC_scaffold_1 24517576 280 + 233722169 agtaacaacaataaatgctTATGTTATAACAAACAGTCTAAGAT------------AAATAAATTCTAGCTA-GAGCCTACTCAGTTTGCAAGAAAA--TTTGGTATTAtaaagatcaaaaatatttgcaagGCAATATTCAGAAATATAATAGAGAGCTGAGTATGTTGGCATATACCTGTAACCTTAATTACTAAGGAAGATGAGGTAGGAGGGTCAACAGTTTGAAGTCAGTTTG---------GGCAAATCTgaaagatcatgtctcaaaagaaagaataagaaaaggtt---TGGGACATAG

a score=9106
s chr3            62310410 278 + 160039680 CTCCCTAGGCAATGGGCAAAGAGACACCTTATTGGTGGCATTGTTCTTATATCAGGCAGGGGCAGAGCAGATGACAGTCCTTTGTTCATCCTAGCTTGATTCTTGGCATGGTAGCCAAAGCTGTCTTGGGCCTATGACTCAT----------AAAAACCAAGTCAAATCAGATCCAGAAGAAAGACAGACAGA-CAGACCTGCAGACCACCATGTCACTCACAGACCTGCCCTTTAGTGCACAGCA-------CAGGTGGACCATAGACACCTGATTGCTGCCACACTACACAGTG
s HiC_scaffold_1 195809927 269 + 233722169 cccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCTGTT-TGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggc-aataagagcaaaaagggaggattAAAGAGCAAACCT------------------------CTTTCCCTTCATTGTACTGTAggcagggcagatgtagcactcacacct-ataatcacagTACTAGACAATG

a score=3655
s chr3           62383724 124 + 160039680 ACTTTTC----TGCTCCTGTACTGCTGGCAGCAATGTATGTTTGTTTACATCAGCGTCACCATACACACACGAGCACAGCATGGTTCTGCGACCACATGGCCACTATGAAGTGGTTAGGCACTAGAAA
s HiC_scaffold_1 49960572 128 + 233722169 ACCTTTCGCTGTGCTTTTGTATGCCCGGCAGTGCAGTATGCCTGTTTTCACCAGCATCACCACAAGCACATGAAAGATGCATTGAGCTCCAATGCAATGATAGCTAGGATGCTGTTAGGTGATAGGAA

a score=5492
s chr3           62425516 253 + 160039680 GAGCTTTCAAAGT-----TATATGTACACACTGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTT------TACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAAT------TTTGTGCACACAGA-------AGTTTCAT----GGTGTACAGTTTTCCATTTGTGGTA
s HiC_scaffold_1 88796854 276 + 233722169 gagtcttaaaagtaattttagaagCCAAAATTGAGTATTCTTTATCTAAAATGTCTGGGATGAGAAGTATTTGGGTTATGTATTTCTACAGATT--GGAGTAATTT---ACACCTGATGAGACATCTTGGGTATGGGATCCAAGTTTAAATACAAAACTCCTTTATTACTGATGTACACCTTGTACACACAGCCCAATGGTAATTTTAGACCATAGTTAACTGTATGTTCATTTTGACTGTTATAATATCAGATTAAGTGAAGAGTTTTCCATTTGAGGCA

a score=5661
s chr3            62425535 190 + 160039680 TACACACTGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACATTTTGAA-------AGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTT
s HiC_scaffold_1 145749448 189 + 233722169 tgcaaattaaatatTCCTTATC--CAAATACTGGAGCCAAAAGTGCTACAAATTTTGAATCTTTTTGGATTTTGCAATATTTGCATA------GTGAAATAGTTTCAGGATGGTACCAACACCTAAATATGAGATTCATTTATAGTTTATATACATCTTATATGCATATTCTCAAGGTAACTTTATTCAATAGTTCT

a score=7253
s chr3            62425535 179 + 160039680 TACACACTGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACATTTTGAA-----AGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATAT
s HiC_scaffold_1 153152990 184 + 233722169 TGCAGGTTGAATAGTCCTTATCTGAAATGCGTGAGACCAGTAGTATTTTAGATTTGgagtttttggattttggaatatttgcatacatGTGATAAGACATTTTGGGGAGGGAACCCAAGCCTAAACATGAAATTCGTTTGTGTTTCATATGTATACTATATACATAGTCCAaagatgtttttat

a score=6111
s chr3            62425535 192 + 160039680 TACACACTGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACATTTTGAA--------AGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTTGT
s HiC_scaffold_1 121437895 193 + 233722169 TACTAATTGAGTATC-CGTATCTTAAAAGCTTAGAACCAAAAGTATTTCAGATATTGCATTATTTTCAGGTTTCAGAATATTTGCATATGTATAATAAGATACCTTTGAGGTGAGACTCGTGTCTAAATATGAAATTCACTTGTGCTTTATACACAGTTCATACACAtaggctgaa------tatttttaataattttat

a score=4758
s chr3            62425542 290 + 160039680 TGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACA---TTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTT-GTGCACACAGAAGTTTCATGGTGTACAGTTTT-----CCATTTGTGGTAAGCCTGACAGTC----AAAACTTTTGTATTTTTAAAGATTTAGGATCATATTTTCATAT-TTTAGACA
s HiC_scaffold_1 131684834 292 + 233722169 tgAGGATCCCATATCTGAAGTGCTCA-GGTCAGAgatgttttataattctttttcagattttggaatacaCACACA---GTCATGAGATATCTTGGGCATGGGAACCATATCTAAGCATGAAATTCATCTCTGTTTCATGTTTGCATTATGCACGTAGCCTGAAGTTAACTTTCCACAACATTCTTAGAGCAC-CTGCATTTTGACTGTGACCTGTTGTAGGAATCAGGTGTGGATTTTCTGTcatctttcaaaaaattttggACTTTGGAACATTT-------CAATTTCAGATATTTAAACA

a score=7111
s chr3            62425542 223 + 160039680 TGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACATTT--------TGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATA-------TCTAATAATTTTGTGCACACAGAAGTTTCATGGTGTACAGTTTTCCATTTGT
s HiC_scaffold_1 173341141 230 + 233722169 TGAACAACCCTTATCTGAAATGCCTAgaaccagaagtgtttcagatttctgAAATTTGGTAGATTTTGGAATGTTTGCATATACATGATGAGATATCTTGGAGATAGGACCAAAGTTTAAACACTAAATTCAT--ATGTTTTATGTACACTTTAGACACAAAGATGAAAgtaatttatacaatattttaaataattttgag--caTCAAAATTTTAAGGTGT----TCTTCCACTTGT

a score=4986
s chr3            62425553 300 + 160039680 TATTATCAATGCCTACAGTGAGATGTGTTTTACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGAT------------------------AGTTATATCTAA------------TAATTTTGTGCACACAGAAGTTTCAT-------GGTGTACAGTTTTCCATTTGTGGTA--AGCCTGACAGTCAAAAC-TTTTGTATTTTTAAAGATTTAGGATCATATTTTCATATTTTAGACATTCATATTTCAGCTTACCTTT
s HiC_scaffold_1 221976123 325 + 233722169 TATTTTGAATGTCT-------GATTTGTTTTG----------GATGTGGGAATATTTGTACACATATAATTCAGTATCTTGGGGATGGAGCCCTAATCTAAACAGGAAACCCATTTATGTTTTACATGCACCTTATACACATAACCTGAAAGCAAGCCGGGGAAGGATTCCTCCGTGAGCTGGATCCCACTAGTGCACCCGCATTTTCACATATGCCAAGGTCACATAAGGTCAGGCATGGAATTTTCTGCTTGTGGCATCATGTTGATACTCAAAAAGCTTTGGGTTTTggagcattttgaattttgcattcATA----ATACAtccctctctgtctttgtcttt

a score=6640
s chr3            62425557 175 + 160039680 ATCAATGCCTACAGTGAGATGTGTTT-------TACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTTGTGCACA
s HiC_scaffold_1 229906015 181 + 233722169 ATTAATACTTCAGATAAAAAGTACTTCAAatactagattttttaaaatttcagaatccTTGCATATATATCGTGACGTATCTTAGTAATGGAACCCAAGTCTAGACACAAAATTCACTTATGGTTCATGTA-AGATTGCACACATAGCCTAAAGACAGTCTTATACAATATTTTAGAGCACA

a score=5710
s chr3            62425560 265 + 160039680 AATGCCTACAGTGAGATGTGTTTTACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGT---------TATATCTAATAATTTTGTG-----------------CACACAGAAGTTTCATGGTGTACAGTTTTCCATTTGTGG--TAAGCCTGACAGTCAAAACTTTTGTATTTTTAAAGATTTAGGATCATATTTTCATATT
s HiC_scaffold_1 107031728 276 + 233722169 aatgcttaggACCAAAAGTGTTATGGATTTTAGATTGTTTTGAAA---------AGACATGTTTAGGTCTCTTGGGGATGAGACCTAGGTCTAAATTTGAAATTCAATTATGTTTCATATATACTTTACACACATAGCCTGGAGGTAATTTAATGGCATATTTttagtgtgtctgtgtgttgacTATAACCCATCACATAAag---tca-ggtgtggaattttctacTTGTGGCTTTATGCTGGCACTCAAAAAGTTTTAGACTTTGAAGTTTTGA----AGGTTTTCACATT

a score=5080
s chr3            62425560 170 + 160039680 AATGCCTACAGTGAGATGTGTTTTACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTT--GTGCA
s HiC_scaffold_1 204834214 167 + 233722169 AACACTTAGAGCCAGAAGTGTTTATGATTTC---AGATTTGGAAATTTTTACACACACATAATGAGATATGTTGGGGGTAAGACCCATATCTAAGTATGAAACTCACTG--GTTTCATATGTACCTGATACATGCAGACTGAGAGCTATTGTATTCAGTTCTTTTCAGTGCA

a score=7051
s chr3           62425560 273 + 160039680 AATGCCTACAGTGAGATGTGTTTTACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTTGTGCA-----------------------CACAGAAGTTTCATGGTGTACAGTTTTCCATTTGTGG---TAAGCCTGACAGTCAAAAC-TTTTGTATTTTTAAAGATTTAGGATCATATTTTCATATTTTAGACAT
s HiC_scaffold_1 65170183 294 + 233722169 AACGCTTTTGTTTAGAAGTGCTTCAGATTTT---ATCTTTTGTGGTATTTGCATATGTATAATGATGTATTCTGTAGATGGGACTCATGTCTAAATATAAAAGTCATGTATGCTTCATATACAACCTGCACACATAGCCTGGGAGTAGTTTCATACAACATTTTAGTGCACCTGCATTTTAACTGTGACCTGTCACAGGAAATCA--GATGCAGAATCTTCCATTTGTGGCATTATGTCCG-TGGtcaaaacatttcagattttggagcactTCAGATTACAGGTTTTTGGATTAGGCAT

a score=4784
s chr3           62425583 183 + 160039680 TACATTTTGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTTGTGCACAC----------------------AGAAGTTTCATGGTGTACAGTTTTCCATTTGTG
s HiC_scaffold_1 17082061 195 + 233722169 tacataatgaaaA-----GGAATATTTGCATGAA----ATGATACATTTTAGAGATAAGACCAAAGTCTAAACGCAAAATCAACTTATGTTTCATATATACCTTATATACACAGTCCAAAGGTAATTTTACCCAGTATTTTGGGGGGTGCCTTTGTTTTGACTGTGACGTCAAGAAGGTTCA-GGTGTCACATTTTCTACTTGTG

a score=3845
s chr3           62425596 137 + 160039680 ATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATT---CTAAAGATAGTTATATCTAATAATTTTGTGCACAC
s HiC_scaffold_1 42128870 139 + 233722169 ATTTTAGAGTATCTGCATAAACATAATGCGGTATCCCAAGCAGGTGACCCAAGCCTAAATATGAAATTCACTTACG-TGCACATCCGCCTTACACAGATGCTGGCCCAACAGCTGTTTTACACAATGCATTAGTGCACAC

a score=4837
s chr3            62565225 351 + 160039680 TATGATCTAAATGTTTCTCACTTCCTAG--TCATGTGCCAAAATCCTAACTACCTCAATGT--TTGTGTTAGGAAATGTAAGCTTTGGGGAGC--------CTTAATAC-ACTTGTCAATGAAGGGCATTAATATCCTTGTTTGGTAGGTCCCAAGAAACTGTGTTGACCCTTCTACCATATATTGACACAACAAGAAGCTAGCTGTCTATAAACCAAAAGTAAGACTTCTTCAGATGCTAAATCTGAAGGTATCTAAATT--AGATTTCTCAGATTCTATAACTAAG--AAGTAAAT-------------TTGCCTTATTTGTGGTATTTTGTTGCAGCACCCTAGGCAGGCTGAGACAGGAAGCAAGGAAACTACACAA
s HiC_scaffold_1 205466416 349 + 233722169 TATAAATTGAATGTCTC---CTTgcaaaattcatgtgttgaaat------------aaTGTGATGgttttaggaggtggggtctttgGTAGGCAACAAGATCTTAAGGCTACTGATGAATAATATAC-TTAGTTCCCTTATAAAAAGGACCTCAAGGAGCTCTTTAGCTGTTTCTGCCTTGTGAGGATACAACTAGAAAACAGCCATCTACCAATCAAGAAAAGGACTTCACCAGACACCAGATCTGCCAGTACCTTGATCTAGAACTTTCCAGACTA---AACTGTGTAAAATAAATCTCAGTTTATAAACTGCCTCGTCT---ATATCATATTACAGCAGCC----CAAACTAAGACagaca------aaattacaaaa

a score=6609
s chr3            62761495 89 + 160039680 AGGACCTCAGCTGAATGCCCAGCTAGAAGGTTGGCTTTCACAAGTACAGTCTAC-GAAAGACCTGCTAGAGCCATTATTGCACCCCATGT
s HiC_scaffold_1 220281969 90 + 233722169 aggCCCGCAGCTGAATGCACAGCTAGAAGGTTGGCTTTCACAAGTACAATCTACAAAAAGACCTGCTAGAGCCATTATTGCACCGTAAGT

a score=5307
s chr3            62761578 69 + 160039680 CCATGTAGGATACACATACTGTGGGGCTTGTGCTGCCCATGCTTATAAAGAAGTAGATCCATCTATTAC
s HiC_scaffold_1 220286006 69 + 233722169 CCATGCAGGATATACATACTGTGGGTCATGTGCTGCCCATGCTTACAAACAAGTTGATCCATCTATTAC

a score=12389
s chr3            62761639 152 + 160039680 TCTATTACCCATAAAGATGAGTTTACCACTATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCTGAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGTGGACCCTAGCGATCTCTTTGTAGTTTCTTCTGATTTCTGCCACTGGGG
s HiC_scaffold_1 220320299 152 + 233722169 tctttaagCCATAAGGATGAGTTTACCATTATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGgatcctagtaatctctttgtgGTTTCTTCTGATTTCTGCCATTGGGG

a score=5423
s chr3            63222167 260 + 160039680 ATATATATTTTG-GTTT---TCAAGCATAGCTACTGGCCCATGACCCTTTTCTAAGTATAGAACACAGAAATTAGACTTTCTCTTCCTCACAATTTCCCACAGACACTCTAATCTTCTCAGCTTTTCTGTCCTCAA-CTGACCATATGGAAATTGTTTGACTTGACCTTGTCTTACAGTAAGTTATAAGACACTCCCCATTCCAGAGAGCTCTGCCTCCTACCCTGGAGGAGAGAATGTTCCAGGGAGGCCACAGAGATCCTAAA
s HiC_scaffold_1 177928534 231 + 233722169 atacatattttgtgtatatatgaaGTATATTTACTTCCCCAAGGC--------------AAGCCACAGAAACTagagtttcttttcccca-aaGGAGGTATAGAAACCCCTATCTT-------------TCTTAAAGTTTGCCATAAGAAAATTTTCTGACCT-ACTTTGTCTGAGGGCAAGTTATAAGACCTTCTTGGTTCCATAGAGTTCTACTCCATGCCTTGGAGCAGAACAG-----AGCAAGGCCAGGAAGAGTCTGGA

a score=5314
s chr3            63222234 192 + 160039680 TTAGACTTTCTCTTCCTCACAATTTCCCACAGACACTCTAATCTTCTCAGCTTTTCTGTCCTCAACTGACCATATGGAAATTGTTTGACTTGACCTTGTCTTACAGTAAGTTATAAGACACTCCCCATTCCAGAGAGCTCTGCCTCCTACCCTGGAGGAGAGAATGTT--CCAGGGAGGCCACAGAGATCCTAA
s HiC_scaffold_1 178353465 177 + 233722169 TTAAACTTCCTCTCCATAA--GTGAGTCATAGAACCTGTAATTGTCAC-------CTGCCTTTAGTTGACTATGAAGAAATTCTCTGACCT-ACTTTGTTTGATA-------ATAAGACCTTCCACATTCCGAAGGGTCCTGCCCTATACCCTGGAGGAGGGAATGCTGCACAAGGAGCCCAGGAGGACTCTGA

a score=4721
s chr3           63541370 107 + 160039680 aataataAGGCAGATGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACCATCCTA
s HiC_scaffold_1 52067572 107 + 233722169 aataaatagtcATTTATCATTTAATGACAGGGATACATCCTGAGAAGTGCATCATGAGATAAGTTTGTCATTGTGTGAACACTATAGGGTGTATTTATACAAACCTA

a score=3609
s chr3            63541384 91 + 160039680 TGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACCATCC
s HiC_scaffold_1 142817821 91 + 233722169 TGTAACTCAGCTATGGGTATCTGTTCTGAGAAAGCTGTTCTTAGGCAGTTTTGTCTTTATGGAAACATCCTGGAGTGTACTTAAAACAACC

a score=3908
s chr3            63541384 85 + 160039680 TGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATA
s HiC_scaffold_1 203947070 85 + 233722169 TGTCAGTTAACGATGAAGATGTGTCCTGAGAAATGTGTGGTCAGGCAATTCTATCATTGTGTAAACATCGTCAAGGGTGCTTACA

a score=3982
s chr3            63541386 84 + 160039680 TGTGTCAAT-AATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATAC
s HiC_scaffold_1 152761417 81 + 233722169 TGTGTCACTTGATGGGGATTTG----GAGAAATACATCATTAGGCAATTTTGCCATTGTGTGAGCCTCATAGAATATACTTACAC

a score=3667
s chr3            63541390 86 + 160039680 TCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACCATCCT
s HiC_scaffold_1 107560635 86 + 233722169 TTAACAGTGGGGTAACATACTGAGTGATGCATTGTTAGGTGATTTCATCAGTGTGTGACCATTATAAAGTGAACTTACACAATCCT

a score=3783
s chr3            63541390 80 + 160039680 TCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATAC
s HiC_scaffold_1 153578595 78 + 233722169 TTAGTAATGGGGATACCTTCTGAGCAATGCATCATTAGGTGATTTTGCTGCTGTGTGAAGCTCATAGA--ATATTTACAC

a score=3785
s chr3            63541390 77 + 160039680 TCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTA
s HiC_scaffold_1 153603322 77 + 233722169 TTAACACCAGGGATGTGTTCTGGGAAATGCACTGTGAGGCAACTTTGTCTCTCTGTGCAAATCACAGTGTTTACTTA

a score=12339
s chr3            63650557 451 + 160039680 aaaggcatacAATTGAAAAGTAAGGCTGTGTAAGATTTGGTCTTAAATTATACAGTAT-CTGGTTTTGTATAGATAATACACTACTAAATGTGTCTTTAGATAGCCCTCTCCTGGTGGTATTTTCAATAGCCACTAATCTTACC-TGGCACTATGGGA-TTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTACACAGCAC-AATTAGTTGTATATGGGAACAGTAgcttgtttgtttgtttggttggttggttggtttatgtttgtttttttTTCATCTTCAGTTGTCTGTGATGCAGCTTATATAAAGATAATTGTTCTGCTAACTGAATACCATCTTGTAATTGAAAAAAATGCAG-------CCATTGGCATTCTGTATGCTTGTAGGTAAATGCaattattttttaattaaaaaagaatatttttCAAGACTAAAAAAGAAATGAATAA
s HiC_scaffold_1 115383569 408 + 233722169 aaagaaaaaaagattaaatgtaaGGCTGTGTAAGATTTGtttctcagtggtagagtgttctCTTTTTGTGTA--TAGCACACTACCAAATGAGTCTTTAGAAAGCCCCATCTTCTCTGTATTTTCAGTGGCCTCTACACTGGTTGTTACAGGATGAGAGTCATAAGTTGGTATAGACATTTAAAGTAGGTT-GGGTTGATACACAGTACAAATTAATTGTATATTGGG----------------------GATTGGcag---ggttt-------ttatttttcccttttaatttggCTCTGATGTGGCTTATACAA----AATAAATCTGTTAACAGAAAATTACtctataattgaaaaaaatactgaagctTTTTATTGATGTTCTGAATgcttttaagtaa--------attttttaatttaacaaaaa-------cgaaagaaagaaaggaaggaagaa

a score=6619
s chr3           63733316 227 + 160039680 ATTATATTCATGCCCAACTATCCATGGGAGACTGGCGCTGGAAT-----ACTTCTCAGACACCAAAT----CCCAAAGCTGTTTAAGTCCTTCCTGCAACACAAT-TTGATATCTGCACACCACGGTGTGCATCCTCCTGTTCACTTCAAATCACTTCTAGGCTACTTATCATGCATAATATAACATAAATATTAT-------------------------------GCAACCCAAGGGAAAGAAACCTGTGCAGGTTCAGTACAGAT
s HiC_scaffold_1 75275704 268 + 233722169 ATTATAGCTGCTCCTCAGTGTCCTTGGAGGACTGGCTCTAGCACTACCCACCTCAAAGACACCAAAATCTACCTGCAGTTGCTCAAACCCCTCATATAAAACGGTGTTAATACTTGCACATAACCTTGCCTATCCTCTCGTGCACTTTAAATAATCTCTAAATTACTTACAATGCCTAATATAATGAACATTCTATGAAGTTGTTGTTATACTGTGTTGGTTAGGGagtaatgacaaggaaaaaaatctgtgcaTGTTTAGTGCAgat

a score=3985
s chr3           63733357 148 + 160039680 AATACTTCTCAGACA-CCAAATCCCAAAGCTGTTTAAGTCCTTCCTGC-------AACACAATTTG-AT--ATCTGCACACCACGGTGTGCATCCTCCTGTTCACTTCAAATCACTTCTAGGCTACTTATCATGCATAATATAACATAAATATTATGCA
s HiC_scaffold_1 70960975 149 + 233722169 AAGACTTCTTGTACATCCACAAACCACGGATGCTCACATCCTGTGTATTAAATTGAACAGTATTTGTATTAACCTACACACT----------TCCTCACATTCATTTTAAATCACTTCTAGATCACTTATAATACATAGTATAACACAGGTGCTATGTA

a score=34256
s chr3           63905329 1193 + 160039680 GGATCTCCCACCGCCCCCACGACGGGGCGCAGCAGTTC------CTGTGGTGGCAGTGACGGCT-TGGCAGTGCGGCTCCTCTGTGACCCACCCCGC----------------------GCTGCCACGATGCCCAAGAGGAAGGTTAGCGTGGATGGAGCGGC--CAAGGCGGAGCCCAAGCGCCGCTCTGCCAGGCTGTCAGCCAAGCCCGCCCCTGCCAAGGTGGACGCAA--------------------------------AGCCGAA-------------------------------------------------------------------AAAGGCTGCGGGAAAGGATAAAGCATCAGACAAAAAAG-TGCAGATAAAAGGGAAGAGGGGAGTGAAGGGCAAATAGGCTGATGTGGCTAACCAGCAAACCACA---GAGCTACCTGCAGAAAATGGAGAGACAAAAACC----AGAGTCCAGCCTC---TGAAGAAGAGAAAGAAGCTAAGTCCGACTAAGCATCCATCAAGTC-TGTCAGTGGTCCC--ACCTCCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCGAGTTTTTTTTAGTATCTCTAGAAACATTTTTAAAAGGTGAGGGGATCCCACATCATCCCATTTTTTAAGTGTAAATGGTTTTCTTTCTAAGAGGTTAAATCATTTACTGGTTGTTTATTTTTTGGTGCAACCAGAAAATAGCAGGATACTGAATCAGGAGAGGCTGTGACTGTCTCGGGGGTCACCATAACATTCTG-AAGAGGGGGCTAGTTTTATATCCTATAATACAAAGCATACTAAATGGCAATTTGGCGTCTCAGTCTTGCATT---CGTGTCTGGAATAGTTT-CAGTTCTATCTGGTCCCGTGTTTGTAGTAGAACCATTTTGTAAGAAAGCCAGTCCTTGGCCCTTGCCCTGTCAGAACTG-----------TGATGTC-----TGTGGTCGTGGCAGTCCA-TTTTCCTAACAGTTGTGATAATGTGCTGTGAAAGGTGGAAGTCCTGAGTCTGTTCTGTGTGTGGCGTAACATTGTGAATTGGTGGGCT------GAGGATTACAG--GCATTTG------GCTGTTATGAGAGGTCTTA-GGGAAATTTG---CCGAGTTTGAGGCTGGAACATCACTGGAATAAGTTCCAGTAGCTCTTCATTTGTGTACATGAACAGTACGTG---------AGTTTGGGTACGTGAACACAGTATATGGCTCTTTTTGGGTACGTGTAATAAGATTTGGAATGTCTGTAC---TCTGCTCCTCGACCAATAAAATCTGTTGTGAAAGAGGAAAAAAAAAAAAAAAGAA
s HiC_scaffold_1 17394748 1336 + 233722169 GGTTCTCCCACCACCCCCATGGAGGGTCCCAGCCACTCTGGCTGCTGGAGGAGCTGCAGCGCCCCTCTCCGTGAGGCTCCCATGCACCTCGGCCCGCAGCTCCTGCACACACCCTCCTTGCCTCTGAGATGCCCAAGAAGGAGGTCAGCTAGGCCAAAGGGGcagcaaagaagagcccaagga--GACTGGTAATGTTGTCCAGTAAACCTGCTCCTGCAAAAGTGGAAACAATCCAAAAAGGCAgcgggccagagatttagctcagcggaataagcacctgcctagcaagcatgagatcatgaatttgatccctggtaccaaaaacaaaagaaagaaaaaaagtagcgGGAAAGGATACATCTTTGGACAAAAAAGGTgcaagcaaaaaggaaaaggagagcaAAGGCGAAACAGGCTGAAGTGGctaaacaagaaaccaaataagaTTTACCTGcagaaaatggagaaagggaaaatgaagagAGTGCAGCCTCAAACGAAGCAGGAAAAAAGACCAAGTCAGATTAACCACACACCATGTCCTATCAGGACTCCCCGGTCTCGCTGCTTGTACAATCCAGAGGAATATTGTTATCAACTATTTTGTAAATGCAAGTTTTTT--AGCAGCTCTAGTAACCTCTTTAGAAAG-GCGGGAATCCTATCTCATTGCATTTTCTAAgggtaaattatttattt----agaggTAAAATCATTCgctgattgttcattttttggcACAACCAGAAAATAGTGGGATACTGAATTAAGGCAGGTTTTGACTGTCTTGGGTGTCAGTTTAACATTTCATAGGTGGGGATTAGTTTTATATCC-ACAATACAAAGCATGCTAGATGGCAATTTAGAATCACAATCATGCATTTAATATGccttgaacattttaaaatgatttctactcctatatttttagtaaaattgCTTACTAAGAAAACTACTTCCTGGCTGTTGCCCTGTCAGAATTGTATGCACTTCCTAACATCTTTAGTTTGGTCATAGTAGTCCAGTTTGCCTAA----TTTGTTAACGTGCTGCAAAAGATCGAAAATTTGAGTATGTAGTTTATAAGATACAAAATTGTGAATCAGTGGCATTTAAAATAAGATCTTAGCAACATTTGAAGATAGTGGTACTTAAACTTCTTACAGAAAATTTGCCTCCAAATTTGAAGCTGGACAGTCTCTggaataactgaaaa-------------------agaaacaacacGTGGCCTTTTACATTTTTGGCATGTG-----------------TGTTTAGAATTCTGtaaaaag---tgaaatgtctctATTGGTCTTCAACACAACCGATAAAATCTCAAATATGAAAGtaagtaacaataataataa

a score=14805
s chr3           63905414 417 + 160039680 CCCGCGCTGCCACGA--TGCCCAAGAGGAAGGTTAGCGTGGATGGAGCGGCCAAGGCGGAGCCCAAGCGCCGCTCTGCCAGGCTGTCAGCCAAGCCCGCCCCTGCCAAGGTGGACGCAAAGCCGAAAAAGGCTGCGGGAAAGGATAAAGCATCAGACAAAAAAGTGCAGATAAAAGGGAAGAGGGGAGTGAAGGGCAAATAGGCTGATGTGGCTAACCAGCAAACCACAGAGCTACCTGCAGAAAATGGAGAGACAAAAACC----AGAGTCCAGCCTCTGA------AGAAGAGAAAGAAGCTAAGTCCGACTAAGCATCCATCAAGTCTG-TCAGTGG-TCCCACCTCCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCGAGTTTTTTTTAGTATCTCTAGAAACATTTT
s HiC_scaffold_1 64199932 415 + 233722169 CCTGCTCTGCCAAAAAACGTCCCAGAGGAAACTCAGC-TCAAGGGCGTGGTGAACGAGGGGCTGAGA----GATCAGCAAGGTTGTGCGCTAAAGCTGCTCCTAAAAAAGTGGAAATGAAGCCAAAAGCAGCAGCCAGAAAGGATAACTCTTCAGACaaaaaaaag-----gacagagaaaagtggagaaaaaggaaaa----ctgatgTGGCTAAGCAAGAAATCAAGGATTTACCTGCAGAAAATGGAGGAACTACAAGTGAGGAGAGCTCAGCCTCTGACGAAGCAGAAGATAAAGAAGCCCAGTCTCACTAACCATGTACCATGTTTAATTAGTGGGCCCCGGCTCCCTAATTTCACAATCCAGAAGAGTGTTTTTATCAACTGCTTTGTAAATGTAAG--CTTCTAAGTAGCtctagaaacatttt

a score=25102
s chr3            63905725 633 + 160039680 TCAAGTCTG-TCAGTGGTCCC-ACCTCCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCGAGTTTTTTTTAGTATCTCTAGAAACATTTTTAAAAGGTGAGGGGATCCCACATCATCCCATTTTTTAAGTGTAAATGGTTTTCTTTCTAAGAGGTTAAATCATTTACTGGTTGTTTATTTTTTGGTGCAACCAGAAAATAGCAGGATACTGAATCAGGAGAGGCTGTGACTGTCTCGGGGGTCACCATAACA-TTCTGAAGAGGGGGCTAGTTTTATATCCTATAATACAAAGCATACTAAATGGCAATTTGGCGTCTCAGTCTTGCATT---CGTGTCTGGAATAGTTTCAGTTCTATCTGGTCCCGTG---TTTGTAGTAGAACCATTTTGTAAGAAAGCCAGTCCTTGGCCCTTGCCCTGTCAGAACTGTG-----------ATGTCTGTGGTCGTGGCAGTCCA-TTTTCCTAACAGTTGTGATAATGTGCTGTGAAAGGTGGAAGTCCTGAGTCTGTTCTGTGTGTGGCGTAACATTGTGAATTGGTGGGCTGAGGATTACA-------GGCATTTGGCTGTTATGAGA---GGTCTTAG----GGAAATTTG---CCGAGTTTGAGGCTGGAACATCACTGGAATAA
s HiC_scaffold_1 210615648 660 + 233722169 ttaggtctGCTCAGAGGCCCCTGGCTCCCTTCCTGTACAGCCTGGAGGAATATTTTTATCGACTATTTTGTAAATGCAA--TTTTTTTAGTGGCTCtagcaacatttttaaaaag-aagggacTCCCACCTCATcagattttcaaagtataaatgattttttt----agagGTAAAATCATTTgctggttgtttattttttggcacAATCAGAAAGTAGTGGGATCCTGAGTTACGGCAGGCTTGGACTGTCTTGGGTGTCAGCGCAGCACCTCACAGGTGGGGGTTAGTTTTATATCCCATGATAC-AAGCACACTAAATGGCAATCTGGAATCACAGTCATGCATTTAATGTGTCTTgggtattttaaataacttttgttcccatgttctttttaatagaattgcttctttaaaaaactatCTTCTGATTGTTGCCCTCTCAGAATCGTGTGCACTTTGTAACATCTTTGGTCGTGGTAGTGCAGTTTGTCTAA---TTTTGTTAATGTGCTGTGAAAGACTGGAAATTTGAGCATGCAGTGTAGATGACATGAAATTGTGAATCAGTGAGACATAAGTAACACTTTATCAACATTTGAAGATACTCGTACTTCATCTTGGTACTGAAAATCTGCCTCCAAGTTTAAAGCTGGAAAATCACTGGACTAa

a score=11824
s chr3           63905803 471 + 160039680 TTTTTTTTAGT-----ATCTCTAGA--AACATTTTTAAAAGGTGAGGGGATCCCACA--TCATCCCAT-TTTTTA-----AGTGTAAATGGTTTTCTTTCTAAGAGGTTAAATCATTTACTGGTTGTTTATTTTTTGGTGCAACCAGAA-AATAG-------CAGGATACTGAATCAGGAGAGGCTGTGACTGTCTCGGGGGTCACCATAACATTCTG-AAGAGGGGGCTAGTTTTATATCCTATAATACAAAGCATACTAAATGGCAATTTGGCGTCTCAGTCTTGCATTCG---TGTCTGGAATAGTTTCAGTTCTATCTGGTCCCG---------------TGTTTGTAGTAGAACCA---TTTTGTAA-------------GAAAGCCA---GTCCTTGGCCCT----------TGCCCTGTCAGAACT-----------GTGATGTCTGTGGTCGTGGCAGTCCA-TTTTCCTAACAGTTGTGATAATGTGCTGTGAAAGGTGGAAGTCCTGAGTCTGTTCTGTGTGT--GGCGTAACATTGTGAATTGGT
s HiC_scaffold_1 64201019 554 + 233722169 ttctctttattcattcatcttttgatgaaCATTTTCTAAAAA-GAGGGAATCCCATACCTCagtgcatgtttttatttttagtgtaaatgtttattttttta-gaggCAAAATCTTTCACTGGTTGCTTACTTTTAGGAACAACCAGAACAGTAGGTACAGTCAGAAAATTGAATTGTGGGAAGTTTTGACTCTCTTCGGTATCAACTTAACATTCTATAGGCGGGGGTTAGTTTGATGTCTTACAGTATAAAGCACAGCAAATGACAATTTGGAGTCATGGTCATGTATTtaatttatcttaaatatttgaaattatttctatgcccattagaattgtttttttttttgtttttgagacaaggtcttgctacgtaTTCTAGGTTGAAAACGATATATTTTAGGCCCTATGTATTCAAGGCCCTGTAAGAATTCTAtgtatttgataatatttttggTCATGGTAATccattttttctaataattttgttAAGATGCTGTGAAAGTTCAAAAATTTGAACATATGAAGTATTTACGATATGAAACTGTAAACTGGT

a score=16876
s chr3           64012892 933 + 160039680 AACCACCATAGTCTGTTTGCTTAGGAAAGCATGTCAGGCCACTGGATTCTCTTACACAGATGCCAACAAGAACACAGG------GTAGAGGAAGGAAACACTGATAGAGAATTTTGAGAATCCCAGCAGTGGATCCTTGGACCAGGATTGGTCTCTGCTGGAATT-----GAGGGAGAAAAATGCAGATTTAATAGCTTATCTTTAACAAGGACACTAATggggctagagagatttctcagaggttaagagcagtgactgctcttccagaggtctttaattcaattcccagcaaccacatggtggctcacaaccatctgtaatggcatctgatgccctcttctggtgtgtctgaagatagtcacagtgtactcatatacagaaaataaataaataaatA---AGGCCATTAATGAACAATAATCACTGTCTATTTATTACAAAAGTAATCACATGTCTTTTAGTCTTTACCATGATGTTAT-----TTGTATATCAGCCTTCAATTCAGATCATGAAAAGCTTACAGAAAATTTCTTTTGGACAGTCCAGATTGAAGTAAAATTGGCTTTCAGTAAAGTGAATACAATCTTTCAAAGTAGTAATCCTACTTCCATAAATACTATCA-TGCTTCTGGTTGTAAGATAAA--GCTGGACTTATCTATTAATGCTCATGACATCAGAAATATGGAGGATGTGACCTGA----------AAGATTGGATTAATACTTAAA-TGATGTCAATAGTTAAAATAATATGCTTAGTAACCACTGAGGAACT-CTTAACTGTCTGAGCACCAAGCATGACTCTTGTGTGTGTCTGTTTATGATCACCAGCCTGTCACAGGCAGTAGTTAAGATGAGGTAGCATCTGTCTTTATTGTT---------TATGCCAATTTAATTAGCATTCCCTGAATTC--AAAGTGTTTCCTTTTGCTTACAGAAAGGCAGTTTAGTGTGGTTTATGT
s HiC_scaffold_1 26615608 862 + 233722169 AAACTCCATGGTCTGTTGggggaggaagttaggtcagGCTGCTGGATTCTCTTACACAGATGCCAACAAGAGCAAAGGCATCACCTGGGCAGAGGATACATTGATGGTGTGTTTGGAGAATCCCAAGAAATAAACCCTGGAACAAAAATGATCTTTGCTGGCAtcaaaaagaagggagaaagggcaCACTTAA-AGCTTACCTT--AAAAAGCTATTAATGAG-------------------------TAATAGTCACTGCCTT--------------ATttattacagaacag----------------aaatgtctct--tggcttttttttttttctttt--tggtactggggat--------tgaactcaagacctcacttttgctaggcaggtgcttaggcccctga-----gctaaaccctggccctCTCTTG-------------GCCTTTTTTA-TGTGTGCCATAATTTAATAGATCTCATATACCAGAC-----TTCAGATCATGAGTGGTTGACAgaatgtttttgttggatagtccTGATTTAAGTAAGATTGGCATGTAGCTAAATTAGCATCAAGTTTTGATGC--TAATTCCAATTCAATAAATACTATCACTGTTTTCCCTTTCTAAATACATGATTGGACTTGATTAGTAACGTTTGACTTTTCACAAAGATTGAGAATGTCATCTCAAAATCTACTGAAAGTTGGCTTTATATTTAGATTTATGTAATTGGTTAAAA-----------------ACTGGGAAAATCCTTCATTATCTCAAAACCAAACAAGACACC--CGTGtttcaatttgtgtttcttaGCTTCTTCCATGGAGTGGCTGAAGACAAGGAGCA-ATGTCTATATTTTTGGTCTTGACTATGCCAATTTAATTAGAATTCACTGTATCTAAAAAGTGCTTCCTTTTACTTACTGAAAGGCATTTTAATGTGGTGTATGT

a score=6517
s chr3            64053144 377 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGAAAGAAATACACAGCCTAACAAGCCATAGCTAGACGCCAAAATGGCAACTATTTCAACATCCACTTTGAAGTTTCCTTTGGTGCTCAAGAAAGAAGGGACAAAAGAGACCCAGACAATGAAAAAGACCAGCATTCCAAAAGTGATACATTTCCCCTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAGGTTGTAAGAAAACACAGCAGAGCC-AGAAGAACATCAAACCCA----AAAATGGAGCACAGAAACTCTATAGAACCTTCATTGCATTCAAAGATGATCTTTACATTTTGAATTTCAATGTTCTTGAACATGCTGGGAGGCTTTAACACCA
s HiC_scaffold_1 233653845 375 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAGGAGCCCAGGTATCCCAGGGCACAGTAGAAGGCAGTA-----AGGGAGCCCTTGTTGCAGATGTTGATGATGTGGCCATGCtcaatgtgtgtgtctgtgtcaatGTAGGGTGGGTTTGTCCCCA

a score=8530
s chr3            64116545 700 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGACCAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAAGTTGTAAGAAAACACAGCAGAGCCAGGAGAACATCAAACCCAAATAT---GGAGCACAG----AAACTCTAC-AGAACCTTCATTGCATTCAAAGATGATCTTTACATTTTGAATTTCAATGTTCTTGAACATTCTTGGAGGCTCCAACACCAAGTATGCTGCACATACACCAATCTCTCCTACAACGCAGACCAGTACAAT-TAGTTTTCGAAAAATGGGGTG-CATGGATATAAG--ACGG-------GTTTTAGAT---ACAGAAATCCTATAGGCAAAAAAGAGTGAAATAGTCTTTCCAAGAATGGAAGACAGACAAAGGCAAAAGCCGAGTGCCAGAGTGATCTGGCGGGCCATGCAGGACCAGTTGCAT--GGCTTGCCTATGAACAGCAAGGAAGACAGCACAGTGATGACCAGTGACATCTGAATGAGGAAGCTCAGCTCCCGGTCATTGGCTTTCACCAATGGAGTGTGTCTGTGGATTACA
s HiC_scaffold_1 233653845 690 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAG--------GAGCCCAGGTATCCCAGGGCACAGTAGAAGGCAGTAAGGGAGCCCTTGTTGCAGATGTTGATGATGTGGCCATGCtcaatgtgtgtgtctgtgtcaatGTAGGGTGGGTTTGTCCCCATCCAGACTCCACAGAGAGTGATTTGGATCAGAGGGAAAATGGGGATGATGTAGTTT-----------GGTGCCCCTGATACCAGCAACTGCCTCATCCTTCTACCTTGAACAGTCACCTTAAAGGCCAGCACCAAAGTAATGGTTT---------TGGCCAACAGCCACAGT--GAAGACAACTGCAAATGTGGTCTGCTGGAGGATGCATG--TGGCTGTGTTGGGACAGCCAATGAAGAGCAAGGCACAGAGGAAACAAAAGGTGAGGGAGATGAGCAGGGTGTAGCTGAGAGTCCTGTTGCTGGCCTTGACAATGGGAGTGTCTCTGTGTTTCACA

a score=7179
s chr3            64259074 377 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGAAGAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGACGAGCCATAAAGGTTGTAACAAAACACAGCAGAGCCAGGAGAACATCAAACCCAAATAT---GGAGCATAG----AAACTCTAC-AGAACCTTCATTGCATTCAAAGATGATCTTTACATTCTGACGTTCAATGTTCTTGAACATGCTGGGTGGCTTCAACACCA
s HiC_scaffold_1 233653845 375 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAG--------GAGCCCAGGTATCCCAGGGCACAGTAGAAGGCAGTAAGGGAGCCCTTGTTGCAGATGTTGATGATGTGGCCATGCtcaatgtgtgtgtctgtgtcaatGTAGGGTGGGTTTGTCCCCA

a score=7381
s chr3            64339678 258 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGACCAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAGGTGGTAACAAAACACAGCAGAGCCAA
s HiC_scaffold_1 233653845 256 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAA

a score=7318
s chr3            64388734 257 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACATTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGACCAGCATCCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAGGTGGTAGCAAAACACAGCAGAGCCA
s HiC_scaffold_1 233653845 255 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCA

a score=6198
s chr3            64437000 254 + 160039680 TGTGTCCTCAGCAAAATAATGAAGCACTTGGGAAGAAATAGACAGTCTAACAATCCATAGTTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCATTGGTGCTCAAGTAAGCAGGGACAAAAAAAGATCCAGACATTTGAAAAAGACCAGCATCCCCAAAGTGAAAAATTTCCCTTCATAATAGTTTTCTGGCACCTGGTGAGCCACAAAAGTTGTAAGGAAACAG--CAGAGCCAGAAGGTC
s HiC_scaffold_1 233653855 252 + 233722169 TGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGA-GGAATGTGACCCACACA---GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAGGAGCC

a score=5967
s chr3            64442717 252 + 160039680 TGTGTCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGTCTAACAATCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCATTGGTGCTCAAGTAAGCAGGGACAAAAAAAGATCCAGACATTTGAAAAAGACCAGCATCCCAAGTG--AAAAATTTCCCTTCATAATAGTTTTCTGGCACCTGGTGAGCCACAAAAGTTGTAAGGAAACAG--CAGAGCCAGAAGGTC
s HiC_scaffold_1 233653855 252 + 233722169 TGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGA-GGAATGTGACCCACACA---GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAGGAGCC

a score=7371
s chr3            64490934 288 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATACACAGCCTAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAAACCAGAATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAGGTTGTAAGAAAACACAGCAGAGCCAGGAGAACATCAAACCCAAATAT---GGAGCACAG
s HiC_scaffold_1 233653845 281 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAG--------GAGCCCAGGTATCCCAGGGCACAG

a score=7091
s chr3            64537674 258 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAACACTTGGGAAGAAATACACAGCCTAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACATTGAATTTGCCTTTGGTGCCCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGACCAGCATTCCAAAAGTGATACATTTACCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAGGTGGTAACAAAACACAGCAGAGCCAA
s HiC_scaffold_1 233653845 256 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAA

a score=5835
s chr3            64591632 207 + 160039680 TGTGTCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGTCTAACAATCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCATTGGTGCTCAAGTAAGCAGGGACAAAAAAAGATCCAGACACTTGAAAAAGACAAGCATCCCCAAAGTGATAAATTTCCCTTCATAATAGTTTTCTGGCA
s HiC_scaffold_1 233653855 203 + 233722169 TGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGA-GGAATGTGACCCACACA---GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCA

a score=19146
s chr3            64600376 683 + 160039680 AGAAGAATTGCTCTTTT--TTCATGGTGGTTCCTAGGTGGTTGGCTGTGCCAGAATGAAGCTGAATATCTCCTTGCCTGCCCCCAGGTGTTAGAAAGTCTTTGATGTG-GATGTTGAACACGGGCTTTGTATGTTTTATGAGAAGCTTATAGTCACAGAAGCAGTTTCTGATGCTCTAGGTGAACAGTAGAAGGGT--TCTGTGGTCAGAATCAGTGGTGGAAAT----AGGTTTTC-CATGAAGCAAGA----CATTTTGACCCATGGCAGAGTGTGCCTGCTG--TAGAGTAAGGGGCATTTTTGTCACAGATCAAGGAGAACTGGAGAGCAGAAGCACAAGTCTGTTTGTGGATGCATTGTAGATTGCGATCTAAATGTTCTAAACTTGGTTATTGGAAAAAAAAACAGAGAAGG-----ATACCAGGACTGACAGATACTACTGCGCCTCATTAGTTGGGAACTAAAACAACTAGCAGAA-TTAGAAAGCTTTCAGTCTTTCTAAACAATGATGTCTGCCAATATATTGTTAGGAAGCCCTCAAATCAAGGAGGTCAGCCCACGACTAAAGCACCCAAGA-TCCAGCATCTCGTTACTCCACATGTCCTGTAACACAAATGGTGGCTTATTACTCTGAAGAAGC-----------------AAGGATGACACTGCACGGTATGTTATACTTTTGGCCAAGAGAATGAAGGAAGCCAAAG
s HiC_scaffold_1 183145787 699 + 233722169 aagaaagttactCTTTTATTTCATAGCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAA-ATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATGTGATCCAAATCAGCAGGAGGAATGACAAGGTTTACTCACGAAGCGGGGATTCAGTTCTGAACCACGGCCATGTGTGCCTGCTACTCTGAGTAAGGATTATTCCTGTTACAAACTAAGGAGAGCTGCAGAG--ACAGCACACATCTGTTGTGGGTTGCACCATGGGTGCCAATCTGGGCAATGTAAGCATTgttatcacacacacaaaaagagaaaacgGACATTCCTGGACT----AATACCACTCTGCCCTGATGTTTGGGGCTCAAAAGAGCTAGCAAAAGCTACAAACTTTAGAATGCCTCTAAA----GATGTCAACAAATATGTCATCAAAAAGCCATTATACAAGAAAGGCAAGC------------AACCCAAGACTTAAGCATCCTGTTACTCCATGTATTCTACAACACAAACTCCACTACATTGCTCTGAAGAAACAGTTgactaaggaaaataaagagaaggtTACATAATATGGTAAACTTTTGGccaagag-ataaagaaagctAAAG

a score=7197
s chr3            64632687 287 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAA-GAGATCCAGACAATGAAAAAAACCAGAATTCCAAAAGTGATACATTTACCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAAGTTGTAAGAAAACACAGCAGAGCCAGGAGAACATCAAACCCAAATAT---GGAGCACAG
s HiC_scaffold_1 233653845 281 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAAG--------GAGCCCAGGTATCCCAGGGCACAG

a score=7082
s chr3            64690773 258 + 160039680 AGTGTTCCTCTTTGGCCTCAGCAAGATAATGAAACACTTGGGAAGAAATACACAGCCTAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACATTGAATTTGCCTTTGGTGCCCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGACCAGCATTCCAAAAGTGATACATTTACCTTCATAATAATTATCTGGCAGCTGGCGAGCCACAAAGGTGGTAACAAAACACAGCAGAGCCAA
s HiC_scaffold_1 233653845 256 + 233722169 AATATTTCCCTGTGGTCTTAACAAAATAATGTAGCACTTGGGGGCAAAGATGCAGCCCAGAAGCCCTGCACCAGAAGCCAAGATGGAGAAGACCTCCATGGCCACTATCACTTTCCCCTTGCTGCTGTGGTACACAGGGAGGAATGTGACCCACACA--GCAGAACACCAGCATGCTGAATGTCAGGAACTTGGCTTCATTGAATGTGTCAGGCAGGTTTCTGCCCAGGAAAACCACAGTGAAGCTGACCAGGGCCAA

a score=6995
s chr3           64834299 219 + 160039680 CTTGTGGTGCTAAGTAACAATT-------GCTATTAGT---GGGTAAAATCCTTCCCTAGGCTCCAACAGACAAGGCTGAAA--TAAAGTTCAGTCAGTCATGTTAGAGTTCCATA-AATCAAGTTGAAATTGGCTGGGTTATCTG-ACCTCAGGAGT--TAGAATTAGAGAGATAACAGCTACATTTCCCAAACAAGTTAGTTTCAATTGGCACAGCAATAGAGCTCCATCTGC
s HiC_scaffold_1 59514260 235 + 233722169 CTGGTtgtgttaaataaaaattacaggaaGCTATTGCTTCGGACTAAAATTCTGCACTGGACCCCAGCAAGCCaggttaaaaatcaaaatggagtcaTTCCTGCTAAAATTCTACATCGTAAAGCTGAAATTAAGCTGTTTATCTGGACTTCTGGGACACTAGGATTAGAGAGATAATAGGCACATTTCCCAAACAGGACAGTTTCGGTCTGCATGATAATGAGGCCCTCTTGGC

a score=7863
s chr3           64834333 275 + 160039680 TAAAATCCTTCCCTAGGCTCCAACAGACAAGGCTGAAA--TAAAGTTCAGTCAGTCATGTTAGAGTTCCATA-AATCAAGTTGAAATTGGCTGGGTTATCTGACCTC---AGGAGTTAGAATTAGAGAGATAACAGCTACATTTCCCAAACAAGTTAGTTTCAATTGGCACAGCAATAGAGCTCCATCTGCACCCACCTTTCTCTGTCCCCTCTCTCATGCACACACAACA---ACCTAATGGTAACTAAT---TTCTTTCTCAGTGTC--TCTCTACCTTACAGGAAA
s HiC_scaffold_1 83819995 271 + 233722169 TAAACTCCTGCCCTGGGCACCAACAGGCAGggctaaaaatcaaaatagagtcaCTCACACTGAAGTTCCACATCACCAGCCTGAAACTAAGCTGTTTATCTGACTTTCCAAGAAATCAGGATTAGAGAGATAGCAGCCAAATTCGCCAAACAGGCCCATTTCAATTGACA---CGATAAAG-TCCTTCTGCAGTAAcc--------------ctaatacacacacacaaaagtgacCTGAAGTTAGCTAATcaattatgtttctgttgcatgcCCTGCTTTACAGGGGA

a score=5856
s chr3            65090539 202 + 160039680 TGGGCAATACTTTTTTATAACTATTCCCACAGAAAGCT-GTTTACACCAACATCACCAAAAATATATCA------TTCCCTACTGGAACATTATCATAGCTATGATGTCACTAGGTAATATGAACTTTTCATCTCTATTGTAATATTGGGGAACCACAATTACACATGCAGTCTACCA----CTGAAATATCATTTCACCATGAGTGACTAGT
s HiC_scaffold_1 183370828 213 + 233722169 TGTGCTATACTTTCATATGACTGGTAGCATGGTAGGTTTGTTTATACCAGCATCATGACAAATATGTGAATAATGTGTTGCATTATGGCATTATGATGGCTACAACAGCACTAGGCGACAAGAATTTTTCAGCTCTGTTATCATCTTACAGGACTGCCATTGCATCTGCAGTCTGTCATTGGCTGAAATGCTGTTGTGTGGTGCATAGCTGGT

a score=5430
s chr3            65090546 168 + 160039680 TACTTTTTTATAACTATTCCCACAGAAAGCT-GTTTACACCAACATCACCAAAAATATATCATTCCCTACTGGAACATTATCATAGCTATGATGTCACTAGGTAATATGAACTTTTCATCTCTATTGTAATATTGGGGAACCACAATTACACATGCAGTCTACCACTGA
s HiC_scaffold_1 116227352 161 + 233722169 TACTTTTATACAACTGTCAGCACAGTAAGTTTGTTTAAAC--ATGTGGCTAA-----TGTTATACTACAATGTGATGTTACTATTGCTATAATGTCACTAGGTAATAGGAACTTTTCAGCTCCAGTTTAATCTTATGTGACTAT-ATCACATATATGATCTGTCACTGA

a score=4070
s chr3           65184196 101 + 160039680 AAAAATCTGTCCAGGTGTGTGGACAGACTGCACTCAATGTTCATGTGATCTGAGGTTAGTATTTTCCAATCAATGAAACTCCAATAAGAAGACTAAAAATA
s HiC_scaffold_1 29824271 101 + 233722169 AAAATTCTATGCAGGTGTGCTGACAGGTTTTAGTCTTTCTTCCTGAGATAGTAGTTCAGTCTTCTCTGGTCAATGAAATTTCAGTGAGAAGATTGAAATTA

a score=3732
s chr3            65274230 104 + 160039680 GCAATAGCCTACATCCCTCAAGACA---CAATCATCTCTGGAGACACCTGCTCCTCTACACTCAGAGTTGTTCTTTACTAATGCCCCAGGCATCTCTCAATCCAGTC
s HiC_scaffold_1 102727014 107 + 233722169 GCATAAGTTTCCCTCCCTCTCTACATACCAACCATCTCTGAAAACACCCTCACACACTCACCCAGAAGTGAATTTCACTAATGTTCTAGGCATTTATTAATCTAGTC

a score=3951
s chr3           65274241 98 + 160039680 CATCCCTCAAGACACAATCATCTCTGGAGACACCTGCTCCTCTACACTCAGAGTTGTTCTTTACTAATGCCCCAGGCATCTCTCAATCCAGTCTACCT
s HiC_scaffold_1  2185709 96 + 233722169 CATCCCACAGGCCA--ACCATTTCTAGAAGCATCCCCACGGCCACACCCAGAAGTGCGCTTTACTAAGTCTCTAGGTGTTTCTCAGTCCAGTCAACTT

a score=3660
s chr3            65274255 69 + 160039680 CAATCATCTCTGGAGACACCTGCTCCTCTACACTCAGAGTTGTTCTTTACTAATGCCCCAGGCATCTCT
s HiC_scaffold_1 151506424 69 + 233722169 CAATCATCTCTGGAAATACTCCCACAGACACACCTAGAAGTGTTCTTTACTAATCTCCTAGGCATTTCT

a score=7787
s chr3           65317817 474 + 160039680 ttctctgtatcttcttgaagttcac-gactttccatcaaataactgttttgaattct-tgtccaagaggcca-acatatccaccacctcatcaTCGGCTTTTGACATCTCA------------------------GCTCCCTGGAAGCTCTCGATGCTTGTTAGTATCTGACAGCATCCATGCACTGAAGCATTCGGCGTGTATTCCAGCTGTCACTACTTGGCTTTAATGGTGCCTGGCCTGGGAATTCTAAG----AAGGTCGTTC-TGGAGCCTGTATTTATTGCCCACGGTTGCAACACTAGAGGGCGCTAGTCCCAGTAAATTCAAAACTAGTGCTGCTATTCTGCTATCCCTAGCTTAGGTTTGTTGCAA--------TTGGTACCGCTGTATGtggtagattaggggactgcctagataaggtgatccaatct--cagGAC------------CGAACACCTCATCTACAATCACTAGCCTGCAGTCAGGAACAACAGGGTTCTAAGCAGCCCTGAGCCTT
s HiC_scaffold_1 79949240 480 + 233722169 tttcttgtattttcttgGAGTGCACTGAGTTTCCTTAGAACAACTACTTTAAATTCTCTATAGGTAAGTTCATAAATACCAACTGCTTTATAGTTGATTTTTACTGTCTTATTCTATTTGTTGGTTTCGGTCATGATTCCCTGAGAGTTCTTGATGCTTGTCAGTATCCAACACCATCTGTACATTGAAAGATTA-----TTATTTCAGTCTTTGTAACTTGGCTTT-GTGACTATTCTTCTAGAAATTCTAAGTTCTACCTATGTTCTTGGTATCTGTGATTGCTG-CTGCTGTTTCAGCACTGGAGGGCAC-----------------------------------------CCCAAGCACAAGTTTATTGCAAATCCATGGTTGGTATGTTGGTATGGCATGGATTAAGACAGTGcctaaaaagaacagtttgttccTGCAAGCCTCTCCTTGTGCACAGATGCATCATCCACAGTCACTGCGATGTGGTCAGGACACATGGGATTCTGTCCTGCACTGGACTCT

a score=5478
s chr3            65347312 143 + 160039680 AAAAATCCCTAATTCAAACATTTAAAATCAGAAATGTTTCAAAATCCA-AATGTTC--AGCACTGACATAACACCATAAAAGGAAAATCCCACACCTGACCTCCTGGACTGGGTCACAGTAAAAATATAGGTACACTTCAAATGCT
s HiC_scaffold_1 221380531 146 + 233722169 AAGCATCCTTAATCAAAGAATCCCAAGCCCAAAATACTTCAAAATCGGCAATGTTTTGAGCACTAACATGATGCCAGAAGTAGAGAATTCCACACCTGACCTCATATGGCAGATTACAGTCAAAATACAGGTGctctaaaaatatt

a score=4370
s chr3            65347325 131 + 160039680 TCAAACATTT----AAAATCAGAAATGTTTCAAAATCCAAATGTTCAGCACTGACATAACACCATAAAAGGAAAATCCCACACCTGACCTCCTGGACTGGGTCACAGTAAAAATATAGGTACACTTCAAATGCTA
s HiC_scaffold_1 167548953 128 + 233722169 TTAATCATtttccaaaaatgtaaaatactccAAAATC-------TGAGCACCAACATGATATCACAGGTGGAAAATTTCACACCTCACCTCACATGATGGATTATAATCAAAACTCAGGCACAGTGAAAATGCTA

a score=10471
s chr3            65506179 455 + 160039680 TTTTACTGTGGTAatatatatatatatatatatatatatatatatatatatat---atatT-------------AGCA--GACTTAATTCTTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCT----TTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATGGCATCAAAGGTGGCCTTAGCAAAGTTGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGC---------------CATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGG-GCAGGGATGAGACGCACCAGCACAGAGCCACAGTGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTACC
s HiC_scaffold_1 119310696 453 + 233722169 tttcatgctgGTATTGTGAATCTATATAGCCTGGTATCTACATAT---TATATGGGATCTTCTCTAAGAAGCAAAgcattgatttaatt------tttttcttgtacaaaAACACT-ACACGGACGC-ACA-TTAGAGCCTGAGTCCTCTGTGTGGAAACTCTAGT-TGGGTGTGCAGGCCCTGGTCAGTGAATTCCCAAT------------TCCAAACACTGTCTGTTCTTCCAGAGGTCAGAAATGAGACAGCTGCATGTCTAGCA-ACAGAATCAA-TGCAGCCTTGGTGAAACTGC-AGGGCAGCA---------CTAGTGCAGGTGTAACAGTGGTGGACAGCAGCACCAGTGGACACCAGCACTGGCGGCAGCTTCTGGGGCCCAGGGACCCAGACTATGCTAGTGCCTCTGGGAGCAGGGAGGAGGC-CACCAACACAGAGCTGCAGCAGCCAGTCACCCTACAT--CACACTGGGAGGCCTGCC

a score=24497
s chr3           65506233 404 + 160039680 tatTAGCAGACTTAATTC--TTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATGGCATCAAAGGTGGCCTTAGCAAAGTTG-CCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCT-CTGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGTGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTACCAAT
s HiC_scaffold_1  1549984 384 + 233722169 tattttcgaatttcattcatttttattttccttgtgtaAAAACCCTTATGTTGTAGCTACTGTTGGAGCTTGAATCCTTTGGATGGAGACTCTAGTGTGAGTTTTTTCAAGATGGTGGGTGAATTCTTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTCAGGTAGCTGTAGGTCTTGGAGATGGCGTCAAAGGTGGCCTTAGCAAAGTTGCCCAGAGTAGCAGTACAGCCTCTGGCC-AGGTGTAGCAGTCATCAGTACCAGCCATCAGCAGCAGCTTCTT-GGCACAGG-GCTGAGACAATGCCAGTGCCTCCCGGGGCAGGGATCAGACGCA---------------------CTGTCACCTTGCAAGGGACTATGTGGGGTTTGCCAAT

a score=18605
s chr3            65506235 399 + 160039680 tTAGCAGACTTAATTCTTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATGGCATCAAAGGTGGCCTTAGCAAAGTTG-CCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGGGCACAGGA-GCAGAGACAATGCCAGTGCCTCTGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGTGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTACC
s HiC_scaffold_1 178178369 346 + 233722169 ttaacagatttcGTTCACTT---TTTCTTGTGTAAAAACCCT-ATGTTGGAGATACTGTTggagcttgtttttt-----------------------tttttacaagatgGTCAGTGAATTCCTGGTAAGGAGACTTGGTGAACATAGTCTCTTTCCAGAGGTCAGGGATCAGGTAACTGTAGGTCTTGGAGATGGCACCCAAGGTGGCCTTGGTGAAGTTGCCCAAAGTGGCAGTGCAGCCcct----------------------------gccagcagcagcagcttcctGGGCACAGGGCACAAGCACAATGCCTGTGCTCCTGGGGGCAGGATCAGCCACATCAACACTGAGCCACAGCAGCCTGTCACCTTGCAAGGGACAATGTGGGCTTTGTC

a score=23642
s chr3           65506239 398 + 160039680 CAGACTTAATTC-TTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCA----GGTAGCTGTAAGTCTTGGAGATGGCATCAAAGGTGGCCTTAGCAAAGTTG-CCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGG-GCAGGGATGAGACGCACCAGCACAGAGCCACAGTGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTACCAAT
s HiC_scaffold_1 23605995 401 + 233722169 cagatttcattcattttatttttcttgtgtaaaAACCCTTATGTTGTACCTACCGCTGGAGCTTGAGTCCTTTGATCAGAGACT--AGTGTGGGTTTTCACAAGACAGTCAGTGAATTCCTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCTAGAGGTCAGGAGTCATGTAGGTAACTGTAGGTCTTAGAGATGGCATCAAAGGT-GCCTTAGCAAAATTGCCCAAAGTAGCAGTACAGTCCCAGGCAAAGGTGTAGCAGTCATCAATACCAGCTATGAGCAGCATCACTTTGGGCATAAGGCCTGAGACAACCCCAGTGCCTTTGGGTTCGGGGATCAGACACACCA-CACAGAGTCACAGCGGCCTGGCAGCTGGCAAGGGACTGTGTGGGGCTTGTCAAT

a score=24320
s chr3           65508567 666 + 160039680 ATTTTTTTTTAACAGATCTTGCCTCAAGTTTTTTTGTAAAAACAGCATAG---GACACTGGTCATCTGCAAATAATGTGTAGGTAGGTGTGTCACAGCAGTCCATCT----TCAGGCTGGCAGG---AGCCTTTTCTACGGGGCCTTCACAGGGGCCTGGGCA-CCTTTGGGAGCCTGGGCTGGAGCTGAAG------------------CCTGGGCCTTAGCTGGAGCTTTGGCCCCTGCCTTGGTTTGGACCTTAGGC-TTCTGTTAACAGAGCCTCTGACCCTCGGCCATGTAGCTT------CGAATCTGCTTCCCAAGCTTGGGGTGAGCGATGAAAGCCAGGCGGCTGAGTTTGTGGCTGGGACCCTTTGACATCTTGGGCTTGATGGCCTGAGGCTTCACCAGTGCCTTGATGGCCTCTGCGCGTGCACTCACTGCCTTTGCATTGTTGGCCTGCATCTTCTTCAGGCCTTTCTTGTTGTGCTTCTTGGCAAAGCATAATGTTCCTCAGGAACTTGGGGTCAAC--------CCCCTTAAGAGATTCCTATCTTTGTGACTTTAGTTTCTTGATGCCATTTCTGTGCCATTTGCGGGACTGGTTGTGTGTCGTGTGGTTCTTGGACTTGGCCATGTCTGCACGGTAACCCGTGGGTCCCGCAGTGCCTGGGTCTGGCAGCAGAATTCTTAAAACAAACAAACA
s HiC_scaffold_1   787971 682 + 233722169 atttttttt--------cctgccttggGTTTATTTGTACGATGAACACAGAAGGACGCCAGCCCTCTCCCCCTGCATGGCAGCCTAGGG-GTCACGCCAGTccttctgtcctcacattggcagTTACAGGATTTACTGGGGAGCCTTCACAGGGGCCTGGGCAACTTTTTGGAGCCTGAGCTGGAACAGAAGTTGGAGCAGCAACCTGAGCCTGGGCCTTGGTTGGAG-TCTGGCCTTTAACT------AAATCCCAGGCATTTGGCTGGCAAAATCTGCGACCCTTGGCAATGCAGATGAAGACATGGATACATTTCCCAAGCTTGGGGTGCGTGATATAGGCAAATTGAATGAGCTTGTGGTTCACACCCATTGGGATCTTGGGCTTGACCTCcctgggctccaggagggtctCAATAGGCTCCGCACGTGCATCCATGGCCTTGGCATTGGGGGCCTGCATTTTCTTGAAGCCCTTCTTGTTGTGCTTCTTGGAAAAATGC-ATATTCCTCAGGAACTTGGGATTTACGAGATATGACTCTTCAGAGAGTCATATCTTTGCAATCAGGgtttcttgatgctatttctgTGCCATTTTCAGCACTGGCTGTGCGTGGTGTGGTTCTTGGACTTGGCCATGTCTGCACTGTAAAGCACGGCTGTCA-AGtgcctggaaccagaag----------aaaagaaaaaagca

a score=14287
s chr3            65613496 231 + 160039680 GCCCAGTCACCGGAGCCAGCC----CTGCCTGCAGTTTCCTGAACTAAGCGCTTCTGCCCACCCAGAGCAACTGTTTCTAAGGCCTGACTCTAGCAATGGCCTTCGCAAATCTGCGCAAAGTACTCATCAGTGACAGCCTGGACCCCTGCTGCTGGAAGATCCTGCAAGATGGAGGGCTGCAGGTGGTGGAGAAGCAGAACTTGAGCAAGGAGGAGCTGATAGCTGAATTCTAGG
s HiC_scaffold_1 125553729 234 + 233722169 GCCCAGTTACTCGAGCCAGCCAGTGCGAACTGCAGCTTCTTGGTATAAGGGCTTCTGTCCACCGCGAGCGGCAGCCTCGGAGTCC-AAATCCAGCGATGGCCTTCACAAATCTGCGAAAAGTGCTCATCAGTGACAGCCTGGACCCCTGCTGTCGAAAGATCCTGCAAGATGGAGGGCTGCAGGTGGTGGAAAAGCAGAACCTGAGCAAAGAGGAGCTGATAAGAGAGCTGCAGG

a score=12383
s chr3            65613723 155 + 160039680 TAGGACTGTGAAGGCCTCATTGTCCGGTCAGCTACTAAGGTCACTGCTGATGTCATCAATGCAGCAGAGAATCTCCAGGTGGTGGGCAGGGCTGGCACAGGTATGGACAATGTGGATCTGGAGGCTGTCACAAGGAAGGGCATCCTAGTCATGAA
s HiC_scaffold_1 125567943 155 + 233722169 TAGGACTGTGAGGGCCTTATTGTCCGGTCAGCCACCAAGGTCACCGCTGATGTCATCAATGCAGCAGAGAAGCTCCTGGTGGTGGGCAGGGCTGGCACAGGTGTGGATAACGTGGATCTTGAGGCCGCAACAAGGAGAGGCATCCTGGTCATGAA

a score=6229
s chr3            65613871 82 + 160039680 TCATGAACACCCCCAACGGGAACAGCCTCAGTGCTGTGGAGCTCACCTGTGGGATGATCATGTGCCTGGCCAGGCAGATTCC
s HiC_scaffold_1 125569658 82 + 233722169 TCTTCAGCACCCCCAATGGGAACAGCCTCAGTGCTGCAGAGCTCACCTGTGGAATGATCATGTGCCTGGCCAGGTAAGTGCC

a score=9406
s chr3            65613941 157 + 160039680 CAGGCAGATTCCCCAGGCAACGGCTTCGATGAAAGATGGCAAATGGGACCGGAAGAAG-----------------------------------------------------------------------------------------------TTCATGGGGACAGAACTGAACGGGAAGACATTGGGAATTCTTGGCCTCGGCAGAATTGGAAGAGAGGTGGCCACCCAGATGCAGTCCTTTGGAATGAAG
s HiC_scaffold_1 125572164 252 + 233722169 CAGGCAGATTCCCCAAGCAACAGCTTCGATGAAGGCTGGCAAATGGGAGCGGAAGAAGGTGAGCAGCAGCTTCGCCTCACCCTGTCTGGAGCAGGGCCTGAGTTTCTCTAGGTGCTAACTTTGGCCTCTTGCCTTTTGCCTGTCTTGTTGCAGTTCATGGGAACAGAACTGAATGGAAAGACCCTGGGGATTCTTGGCCTGGGCAGGATTGGAAGAGAGGTGGCCATCCGGATGCAGTCCTTTGGGATGAAG

a score=9349
s chr3            65614096 136 + 160039680 AGACTGTAGGCTATGATCCCATCATCTCTCCTGAAGTTGCGGCCTCCTTTGGTGTTCAGCAGCTGCCGCTAGAGGAGATCTGGCCTCTCTGTGACTTTATAACTGTCCATACCCCACTCCTGCCCTTCACCACAGG
s HiC_scaffold_1 125580482 136 + 233722169 AGACTATAGGGTATGACCCCATCATTTCTCCAGAAGTTTCGGCTTCCTTTGGGGTCCAGCAGCTGCCCCTGGAGGAGATCTGGCCTCTCTGTGATTTCATCACTGTACACACGCCTCTTCTGCCCTCTACGACAGG

a score=11594
s chr3            65614203 189 + 160039680 CATACCCCACTCCTGCCCTTCACCACAGGCTTACTGAATGACATCATCTTTGCTCAGTGCAAGAAAGGCGTGCGAGTGGTAAACTGTGCTCGAGGAGGCACTGTGGATGAAGGTGCCATGCTGCATGCCCTGCAGTCTGGTCAGTGTGCTGGGGCTGCACTGGATGTGTTTACAGAAG--AGCTACCACGG
s HiC_scaffold_1 125581406 190 + 233722169 CAAAGCcaactgctttcttttttc-caggtTTGCTGAATGACAGCACCTTCGCCAAGTGCAAGAAGGGCGTGCGTGTGGTGAACTGTGCCCGAGGAGGTATTGTAGATGAAGGTGCCCTGCTACGGGCCCTGCAGTCGGGTCAGTGTGCTGGAGCTGCACTGGATGTGTTCACAGAAGTAAGTTCCTACAG

a score=11726
s chr3            65614338 199 + 160039680 TCTGGTCAGTGTGCTGGGGCTG--CACTGGATGTGTTT--ACAGAAGAGCTACCACGGGACCGGGACTTAGTGGACCACGAGAATGTCATCAACTGTCCCCACCTGGGTGCCAGCACCAAGGAAGCTCAAAGCCGTTGTGGGGAGGAAATCGCAGTCCAGTTTGTGGACATGGTGAAGGGGAAATCTTTAACAGGCGTCGTGA
s HiC_scaffold_1 125588788 203 + 233722169 TCTGGCCAGTCCACAGTAACCAACCTCTAGATCTCTTTTGGAACAGGAGCCACCCAGAGATCAAGCCTTGGTGGACCACGAGAATGTCATCAGCTGTCCCCACCTGGGTGCCAGCACCAAAGAAGCCCAGAGCCGCTGTGGGGAGGAAATAGCCATCCAGTTTGTGGATATGGTGAAGGGGAAATCCTTAGCAGGGGTTGTAA

a score=9679
s chr3            65614533 134 + 160039680 GTGAACGACCAGGCCCTCACCAGTGCCTTCTCTCCACAGACCAAGCCTTGGATAGGTCTGGCAGAAGCATTGGGCACGCTGATGCACGCCTGGGCTGACTCCCCTAAAGGGACCATCCAGGTGGTTACACAAGG
s HiC_scaffold_1 125592475 134 + 233722169 GTAAATGCACAGGCTCTGACTAGTGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCTCTGGGGACACTGATGAAGGCCTGGGCTGGCTCCCCCAAAGGGGCCATCCAGGTGGTTACGCAAGG

a score=9755
s chr3            65614664 149 + 160039680 AGGAACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGCAGTCATTGTCGGCCTTCTAAGAGAAGCATCTAAGCAGGCAGACGTGAACTTGGTGAACGCTAAGCTACTGGTGAAAGAGGCTGGCCTCAATGTCACCACCTCCCACA
s HiC_scaffold_1 125593942 149 + 233722169 AGGAACATCTTTGAAGAACGCTGGCAACTGCCTAAGTCCTGCAGTTATTGTCGGCTTCCTAAAAGGATCTTCCAAGCAGAAGGATGTGAACTTGGTGAACGCCAGGCTGCTGGTGAAAGAGGCTGGCCTCGATGTGCGCTCCTACCCCA

a score=14943
s chr3            65614797 239 + 160039680 GTCACCACCTCCCACAACTCTGGGGTTCCAGGAGAGGAGGGCAGTGGGGAATGCCTCCCGACTGTGACCCTGGCAGGTGCCCCCTACCAAGCTGTGGGCTTGGTCCAGGGCACCACACCAATGCTGCAGATGCCCAACGGAGCTGTCTTCAGACCAGAGGTGCCACTACGCAGGGGCCAACCCCTGCTCATATTCCGGGCTCAGCCCTCCAACCCTGTGATGCTGCCCACTATGATCGG
s HiC_scaffold_1 125594885 239 + 233722169 GTGACCACCTCCCACAGCCCTGCTGCCCCAGGAGAGCAGGACCATGAGGAATGCTTCCTGACTGTGGCCCTGGCAGGTGCCCCCTACCAGGTTGTAGGCTCAGTCCAGGGTGCCACACCTATGCTGCAGGCTCTCAATGGAGCAGTCTTCAGGCCAGAAGTGCCTCTCCGGCGGGGCCTGTCCCTGCTCATCTTCCGAACTCAGCATTCCAGCCCCGCAGTGCTGCCTGCCACAATTGG

a score=12225
s chr3            65615034 233 + 160039680 GGCCTCCTGGCAGAGGGAGGT-TACAGCTGCTGTCCTACCAAACCTCCATGGTGTCTGACGGAGAGCCCTGGCACGTCATGGGCCTCTCCTCCCTGCTGCCCAGCCTGGAAACATGGAAGCAGCATGTATTGGAGGCTTTCCAGTTCTGCCTCTGACCCTGGGGCTCAGCACTCTCAGGCCCACAGGCTCTTCAGAAGAAACCCGCTCACTGTGACCTATAGGGAGAGGGGATC
s HiC_scaffold_1 125595832 234 + 233722169 GGTCTCCTGGCAGAAGCAGGCGTGCAGCTGCTGTCCTACCAGATGTCAGTGGTGTCAAATGGGGAGACCTGGCATGTCATGGGCATCTCCTCTCTTCTGCCCAGCTTAGAAGTGTGGAAGAAGCAGGTGTCTGAGGCCTTCCAGTTCCACTTCTAACCTTGGAGTTCAGTGGTCCAAGCCTCAGGGGCTTCTGTAAAGAAACATAACCACCATGATCAGTAGGGAGAGGTGGTC

a score=17336
s chr3           65615589 403 + 160039680 CTTCTTATCTTCTTTGTTGGAGGGCTTTCTGAAAACCTACTGGCAGATACCATCTTCTTTTAGAGAGATTGAAATGCTTTCTGATCCTGTTATCTCCTCTGGGCCCTAAGCCCCAAGACACAGGAGTATCTTTCAGTCTAGGAATACCCTCTTCTCGTT------------TGT-----------TTTCTGTTTGGTTGTTTGCT-----------------------------GTTGTTGT-------------------------------------------------------------------------------------------TGCTTTTACGATAGCTAACTTGAGAACCCTCAGACTGGCATCTACAATGCATCTGTGAACAGATTTGTGCTTCCTCTCTCCTGGTCCCCTTGGTCTATAACAAGAATGCCCCTTACTCAACTAAGCAGGCCCACCGTGCCATGGTTCAAGACATCTTGCTTCAT-GGGAAACCTTGTTTGTCCTTCCCACCACTGATCCAGACCACACAATCCT
s HiC_scaffold_1 79514896 544 + 233722169 CCTTTTACCTTCTTTGTTTAAGGGCTTCCTGACAACATATTGGCGAACATCATCTTCTTT-AGAGAGATTGAAAAGTTTGCGGATTCTGCTTGCTCTTTTGGGCCCCAGGCGCCGAGGCACAGTAGTATCAGTCAATCCAGGAATATCTTTCTCTCCTTAGAAGAGACAAATGTAAACAGAAGTATTTCAGTTCAGTAATTTCCTTTGTAACATTGAAATGATCATTTACAAGGGTACTTGTAAAATACACTGGTTAATATGCAAACACCGTAAAGGAAAAAACACCTGTAAGTCATCAACAAAAACTAAACGTGAAGAGCATAAACCTCAcctttttttacaataaccaAGTTGAGAACGCTCAGATTGGCATCCACAATGCAACCTCGGACAGATTTACGCTTTCTCTCTCCGGTTCTCCTTGGTCTATAACAGGAATGCCCCTTGCTCAGT--AGCAAGCGAACTCGGCCATGAGTCAAGACGCCTTGCTTCATAGGGAAACCTTGCTTGTCGTTCCCACCACTGATCCGGACCACATAACCCT

a score=7412
s chr3           65615989 137 + 160039680 CCTTCCATTCTTCACCCACAGCACCTGC--CTACTTCTGGGGCCATGCGCTTCTCATAGTAAGTACGAAACTTGTGTCCATCTTCCATCCCAATGAGTTTCTGACAGCCAGTGGCTATCTAGGAAGGAGCTGGTCAGCT
s HiC_scaffold_1 79515841 135 + 233722169 CCTTCCACTCTTCTCCTAGAGAGTCAGCAGCAACTTCTGTGGCCATACGCTTCTCATAGAACGTACGAAGTTTACGTTCATCATCCACCTCAATGAGTTTCTGGCAGCCAGTGG----CGGGGAAGGAGATGTTCAGCT

a score=8883
s chr3           65788733 138 + 160039680 AGCCATGTGCTCTCTTTGGTTCTGGAGACCTCACTTGTAGCCAGCACAAGTGGCCTCGCACCACAGCCTGCCAGACAGACTTG-CTTTGAGAAGTCCTGTTCCCAGCAG--GCCTCCACAGGTGCCAAGATGGTGGAAAGA
s HiC_scaffold_1 13745310 141 + 233722169 AGCTGTGTGTTCCCTCTGGTTCCAGAGACCCCACTTACAGCCAGCATAAATGGCCTTGTGCCACAGTCTTCCAGACATATTTGCCTTTTAGAAGTCCTGTTCCCAGCAGGAGCCTCCCCAGGCTCCAAGATGGTGGAAAAA

a score=4615
s chr3            65933782 85 + 160039680 CTGAATGATCAGCTGCACTGTAATTCTCAGGTCATTCCACTTATCAACTATCTTAGTAATGTTATCACCAACCTTTCGTGGAGAC
s HiC_scaffold_1 186674907 85 + 233722169 CTGAATGGTCAGCTTCACCGTAATCCTCAGACCCTTCCAGTCACCAGTGGCCTTGGCGATATCATCACCGACTTTTTTTGGAGAC

a score=3775
s chr3            65959760 122 + 160039680 TATATCCAGGGATCTCCCTCCTCAAGTAGGTTGCCAACTCCTAATTGCTTGTCCAGCTGTGACCTCATCGTCGGATTAACCCATTTATGAGGTATTTGCCTTTGTGATTAAATCACCTCTCA
s HiC_scaffold_1 133690602 122 + 233722169 TACATCCAGTGACCTATGTCCTCCATCCAGGTCCCACCTATTCATGGCATGTTCTGTCATGAACTTATTGATGTATTAATCCGCTGATGAGGTTAATGCCTCTGCAATATAATTATCTTCCA

a score=9423
s chr3           65968901 250 + 160039680 TTAGTGTTGCTTTCTTCTAAATGAACAGCCTTCTGTGAGCCTGGCTTTTCCTCCTGTGGGCTGGCACAACACAGTTGAACAACC--CACACAAACACTGTCTGAGCATGGCTGAAAACTGTAGTAATCGTGTAGCAACCTGGACA--------TTTCACATCCATGAAGTAAGAATTTGGGCTCTAAACCAGCCGTTTCATCTTACGGCTTTTTTCTTCTCTTCCAAGGAAGGATGTAATAGATCTCTAGCCAGAGGCAT
s HiC_scaffold_1 92900392 247 + 233722169 TTAGTGCTGCTTTTTCCTGAAGGAACATCCTTCTGTGAACCCTGCTTTTCCTCCTGTCAGCTGGCAGAAGACAGTGGAGCAGCCAACACACAAAACTAGTCTGTGCACAGCTGAAGAT--TAGTGAT--TTTAGCA--CTGGGCAGTATGGCCCTTCACCTTCACAAAGCAGGAATTGGGGCTCTGTACCAAatgttgcttgtt----ttttcttctttttctctgagaAGGGATG---AAGATCTTTTGTGTGAGGCGT

a score=8914
s chr3            65989050 340 + 160039680 CACTGCCATCTTTATGGGTGAATTTCCAGCTCTGGAGACAAGGCATATTGACATTTAGCTTCATCACGTTGTCACTGTTCCAACTAGAAACTGGCACAAAAACTATCGTGTCAAAGTCTTATCGAGCTTCCTTGTCA--GGCTCTGACTTCATGAACGATTTCCTCATGTC-CTGTGGATGAAAGGTGACTCTGAGGAATTCATGTTGTTTACGTTGGTACTTAATTGTTTCATACCCAGTGCATAAGCCAAAATGGTGTTGACACAGGTCTACACATTCTTAGAGATTCCAGTTTCAAATCTACCTATGCCAGCAG------GCAGGAAAACACAGTCAGCATGAGAT
s HiC_scaffold_1 100047744 344 + 233722169 CATTTCCGTCTTTATGACTGACTTC---ATCCTTGAACCAAAGCATGCTGGCACTTGGCTCCAGCATGTTGTCACCATTCTAGCCAGAAATTGCCACAAATGTTACTGTGCCAGGGTAGTAGCCAATTTTCTTAATATTAGTGGTGATTTACTTAATAATTTCCTTGTATCTCTTCCACTTGAAGATGGCTCAATGGAATTCATTGTGGTCACACCAAAAATTAGTTGTTTCAC-TCCTGTGTGTAAATTAGAAGTGCATACTCAAGGGCCTGC-TATTCTTGGAAAGATGAGCTTCACATTTATCAACAACAATAGTAAGAATCAGGGGAGCACAATCAGTCTGAGAT

a score=8951
s chr3            66029462 376 + 160039680 accaccacctggTCAAAATCTACATACtttta------------aaaaattttgtaattatatttatGTACAAAAAATTA--GTGTACATTTAACCCAGTTTAGTGGCGAGTTCTTTAGCCTTTACCTTTTCCAGCTTGGCAATGCGAGCCACAGACTTAAGACCCAGGATATTGCCTCTCCAGTAGTGGTGGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCATATCTGTCATTATAATTGCTCCTTAATAGCTTCCACCAGCTTAACCAGAGCACCCTTGTCTTCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGAAGGTAACAGTGGCGTATGGCTTTCTGTGGACCATTCGTCCCAGCCTGGCCTTTCCCTTGATGATGCTGTAGGGCACCTCCATCTTTCGACACAGGGCAGGCAGGAAAACTACCAGCT
s HiC_scaffold_1 194457578 794 + 233722169 ACTGCAAACTGGCCACCACCCAGACACGTTTGCACCAGATTAAGgacaattt----attgtttttatgtacaAAACACCAAAGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTTTTCCAGCTTGGCGATGCGAGCCACAGATTTGGGGCCCAGGACGTTGCCTCCCCAGTGACGACGGATCTGAAATGACAGATAAGCAGCAGTCAGTGTGGTTTGCCATCCACCAAGGCTTTCAGAGCATGAGCGTGGACCCAGAGGCTGCAAGGTTCTAGCAGTGCAGCACCTGTCCCACTCGAGCCCATTTTACCCCTCGGCCCCGAGAGGAAAGCTCCCCTCACCCAGGACAAGGCCTGCAGGGACTCAGCACTCACCTCGTCATATCTGTCATTGTAGTTGGTCCT-GATTGCCTCCACCAACTTGGCCAGTGCTCCCTTGTCCTCCCTAACAAGGGGGGAGGGGACAGGCATTTAGCCTCAGGTTATCTCTGAGAGCAGGAATGACACCCTCTGTACTGTGAAACACAAGCCTTTTGCCTCAGATAAAGCATGACCACATGGCTTATTCAGGTGAAGAAATTCTTAACCATCATGGGCAAATGTTCAGATTCACATACCACACACGCTGTTCCCGAGGCCCAGACTAACACTTACGAGTTGACTTGTGTGAAGGCGACAGTGGTGCAGGTTTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTCCCCTTGATGATGCAGTAAGGGACCCCCATCTTGCGACACAGGGCAGGCAGGAACACAACCAGCT

a score=20730
s chr3           66029507 486 + 160039680 ttatatttatGTACAAAAAATT--AGTGTACATTTAACCCAGTTTAGTGGCGAGTTCTTTAGCCTTTACCTTTTCCAGCTTGGCA-ATGCGAGCCACAGACTTAAGACCCAGGATATTGCCTCTCCAGTAGTGGTGGATCTTGTCATATCTGTCATTATAATTGCTCCTTAATAGCTTCCACCAGCTTAACCAGAGCACCCTTGTCTTC-------CTGTGTGAAGGTAACAGTGGCGTATGGCTTTCTGTGGACCATTCGTCCCAGCCTGGCCTTTCCCTTGATGATGCTGTAGGGCACCTCCATCTTTCGACACAGGGCAGGCAGGAAAACTACCAGCTCAGTGGGGTCTACATCATGGGCAATCACCACCAGCTGAGCCTTCTTGTTCTCCA----CCAAGGTGGTGACTGTATTGACTCCTGCTCAGAGGACAGGTGGTCTCTTAGTTGGGACGTTCCATCTGCCAGCAGCTTT-CTTTTTtttttttttaattttt
s HiC_scaffold_1 62307241 468 + 233722169 ttatttttatgtacaGAAAACTCAGGAGTTCACTTAGCCCAGTTTAGTGGCAAGCTCTTTAGTCTTTGTGTTTTCCAGCGTGGTTTATGTGAGTCACTGATCTAGGACCCAGGACAGTGCCTCTTCAGTGCCGGCAGATCTTAGAGTATCTGTCGTTGTATTTGGTCCT-GGTCACCTCCACCAGTTTAGCCAGTGTGTCTTTGTTCTCAGTTGATTTGTGTGAAGGTAGCAGTGATGCA-GGTCTTCTGTGGACCAGACA-CCCAGCCTGGCCTTCTCCTTGATGATGCAGTAAGGGACCCCCATCTTTTGACAC-GGGCAGGCAGGAACACAACCAGCTCGGTGGGGTCCATGTCGTGTGCAGTCACCACTAGCTGAGCCTTCCTACTCTCCAGGTCCCCAGGT--------------CTCCTTGCCAG----CAGCTTTCTTCTCAGCCTGG-----------GCCAGCTGCCTCGCTTCTTCTCTTGCTTAGTCTCT

a score=6137
s chr3            66029821 98 + 160039680 CAGGAAAACTACCAGCTCAGTGGGGTCTACATCATGGGCAATCACCACCAGCTGAGCCTTCTTGTTCTCCACCAAGGTGGTGACTGTATTGACTCCTG
s HiC_scaffold_1 194458833 95 + 233722169 CAGCAGACCTACC---TCAATGGGGTCCACGTCGTGTGCGATCACCACTAGCTGAGCCTTCTTGTTCTCCACTAGAGTGGTGACAGTATTAACACCTG

a score=4352
s chr3            66029915 61 + 160039680 CCTGCTCAGAGGACAGGTGGTCTCTTAGTTGGGACGTTCCATCTGCCAGCAGCTTTCTTTT
s HiC_scaffold_1 194459095 61 + 233722169 CCTGCTCGGAGGACGGGAGGTCTCTTAGTGGGGACGTCCCCCTTGCCAGCAGCCTTCTTCT

a score=7273
s chr3           66031168 133 + 160039680 ttgcCAGCAGCTTTCTTTTCAGCACGGGCCAGTAGCCTTTGCTTCCTCTCTTGCTTTGTCTCTGGCTTGTACTTGTGGACAAGCTTAAGCAGCTGAGTAGCTGTTTGCCTGCTTAGGGCCTGGGTGAACTGGT
s HiC_scaffold_1 62307647 126 + 233722169 TTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCCTC-GCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCT------CAGGCCACGTCCTGGGTGAAttggt

a score=10861
s chr3            66031168 251 + 160039680 ttgcCAGCAGCTTTCTTTTCAGCACGGGCCAGTAGCCTTTGCTTCCTCTCTTGCTTTGTCTCTGGCTTGTACTTGTGGACAAGCTTAAGCAGCTGAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTGCCTGCTTAGGGCCTGGGTGAACTGGTTAATGGCAGGAGGTACTTTGAGTCACTTAGAGGAGGATGGCTCTTTGCCTCTGCAGCATGGTGTAGCAGGGCCATTTGATGAAGCATGTTAGATCTCTTTTGGGCTGGATGTCCTGCC
s HiC_scaffold_1 194459137 424 + 233722169 TTGCCAGCAGCCTTCTTCTCAGCCCGGGCCAGAAGCCTCTGCTTCTTCTCTTGCTTCGTCTCTGGTCTATACTTGTGGGCGAGCTTAAGCAGCTGGGTAGCTAGGAAAGCATCCTTCCATTAGGCCCTGCAGTTTCAGGTCCAGTCTGTCGCTTAGCATGATGTAAATTCGAAGTCCCTAGCAGTACTACAGGTTGAGCAGAAGCCCACAGGGCTACACACAGGGCCATGCACCACCTTTCCAGTTAGGCTGATTCCACACCCCCAAAGCCCACCTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCAGCCGCTTATA-CAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTGTC

a score=8960
s chr3           66031294 192 + 160039680 AACTGGTTAATGGCAGGAGGTACTTTGAGTCACTTAGAGGAGGATGGCTCTTTGCCTCTGCAGCATGGTGTAGCAGGGCCATTTGATGAAGCATGTTAGATCTCTTTTGGGCTGGATGTCCTGCCTAATGCCGAAGTTCTTGGACCTTTTCTCAAACAAAGGATTGACCACCTTTTTGGCCTCCTGTTTCTT
s HiC_scaffold_1 62308105 180 + 233722169 aactggtTAATCACAGGTGGCACCTTCAGCTGCCTACACAGGA--------TTGCCACTGTCAC----TGCAGCAGGGCCATTTGACAAAGTGGGTGAGAGCTCTCTTGGGCTGGCTGTCCTGTCCAATGCCAGAGTTCTTTGACCTCTTCTTAGACAGGGAATGTATCACCTTCTTGGCCTCCTGCTTTTT

a score=4820
s chr3            66031418 68 + 160039680 CTAATGCCGAAGTTCTTGGACCTTTTCTCAAACAAAGGATTGACCACCTTTTTGGCCTCCTGTTTCTT
s HiC_scaffold_1 194460178 68 + 233722169 CCGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTCCTGCTTCTT

a score=6334
s chr3           66291028 444 + 160039680 CTTATCTATGATTCCTATTTTCCTCCCCTTCCTGTAAA--------AGACAAGCTACAGAAACTAGAATCTCTCTTCTCTAAGGTAGATCACAGACACTAGAGCCCCTGTCCCATA-GCAAATCACAAATCCAGGGACCACCGTTCGTTCTGTTTTTCTCTTGCTGTTCTGTGTTAGAGCTAGCTAGG---AAATCCTTTCACACAGCTGTCCTGATAGTAAGAC----------TCTGGAGGAGGCTGGAACGCTACACAGAGAGTCGAAGAAAGAT-----CTGAGGCGAGAGGCCTTGAAGGATTGCCCCATTCAGTGTATTATCATTACAGCAGACCTTTTCTGT-CCACTTTATTGACACTGGTTATGCATCGATAAATTTAAGCTTAAAAAAAAAATGAACCGATTACT-----CTGAGTTTCTGGGTCCCCAGTCTGAAAGCTCTTATATCACACAGAACTGTGATTCAA
s HiC_scaffold_1 43028455 443 + 233722169 CTTGTCTCTGATTCTGATCTCTGTCTCTTGCCCCTTCATCTTCCCCAAGCAAGCCACGGAGATTAGAACTCCTCTTCCCCAAGGCAAGTCACAGAAACCAGAGCCCTCGTCGCTGACACCAGCTGTAAAACCTGCAAATA----TTACTTTAGCTTCCCCCCGTCTTTCTGTG-CAGAGCTGGCCATGACAAAATTCTCACACCTGCCATTTTTGATTATAGGTCACAGACTGCTTCCAGAAAGGGCT-CCACCCCACACCTCG-GTGGAAGAAAGGTGACCACTGAG------GGCCCAGAGGGATCG---GGGTCTCTATACTTTCATCAGCTCAGGCC---CCTGTGCCACGTGGCTGTCCC------AGCATCCTTGAACCTAAGTACAAAAAGG---------GATTACTTCCTCCAGGGTCCCAGGGTCTTCACCCTTAAGGCTCCTGTGTCATGTCAAACTATGATCAAA

a score=10032
s chr3           66562714 300 + 160039680 gaaggtgtatgccatcactgccaggcCTATTTGTTAGTCTTAAAGACTTTTTTTTTTAAAAACTGGATTCAGACTTAGAAGTAGAAGTACTCAG-GAGGACAGGCTATGCTTCTTGGCAACCTGCTTCTGGTGCTTTTCTTTGGCTT-----------------------------------------------------------------------------------------------CCTTCATTTTCTTGGCCAAAAGTTGAACATATTCTTTAGTTTTCTCCTTGTTTTGCTTAGTGGGTTGTTTCTTCAAAGT-------CAGCATTTGAGTTACAGGAGAGATGACATAACAGAATGGTAGATCTTGGGTTCTTCGGTCATGGGCTTCTTATCT
s HiC_scaffold_1 79513362 393 + 233722169 gaaGGTTGAGGCC----CCATCGAGTTTATTTGTTA--CTTAAGCATTTTATTTCT----GACTGGACTCAGACTTAGAAGTAGAAGCTCTCAGAGAGGAAAGCCTACGTCTCTTGGCAATTTGTTCCTGGCGTTTTTCTTTAGCTTCCTAAAAAACAGAAGTACAGAAGAAGTCAGACTTTTATTCCAGTGAAAACAGCAAATTAGCCATTCTGGTTTCATGGCCTCCCTTATCTCACTCACCTTCATTCTCTTGGCAAGAAGCTTAGCATATTCTGCAGcctcctctttgtttttcttagtaCGCTGCTTCTTCAGAGCAATACGGCGGCGCTTGTGTTGGAGGACACGCGGAGTAACAAGACGCTGAATCTTAGGGGCTTTAGTCCTGGGTTTCTTACCT

a score=10263
s chr3           66563004 413 + 160039680 CTTCTTATCTTCTTTGTTTAAGGGATTC-TGACAACATATTGGCGGATAGTAACTTCTTTTAGAGAGACTGAAAAGCTTTCAGATCCTGTTAGCTCTTGTGGGCCTCAACTGCTGAGATACAATAATATCTGTTA-------AGTATCCTTCTCTCCT------------GTGT---------------------------------------TTGAAATAATTAT-----------------------------------------------------------------------------------------------------------------------------GTTGAGAACACCCCATTTGGCTTCCACAATGCATCCTTAAATAGATTTGTGctctctctctctctctctctctctctctctctctctctctctctctctctctccctctcCAGTTCCCCTTGGTCTATAACAAGAATGCCCTCAG-TCAATGGCCAGTACACTCTGATGTGGATCAAGACACCCACCTTGCTTTGTGGGGAAAACCTTATTTGCCTTTCTCCCCACTGG-CAAGAACACACACCCTTG
s HiC_scaffold_1 79514896 545 + 233722169 CCTTTTACCTTCTTTGTTTAAGGGCTTCCTGACAACATATTGGCGAACATCATCTTCTTT-AGAGAGATTGAAAAGTTTGCGGATTCTGCTTGCTCTTTTGGGCCCCAGGCGCCGAGGCACAGTAGTATCAGTCAATCCAGGAATATCTTTCTCTCCTTAGAAGAGACAAATGTAAACAGAAGTATTTCAGTTCAGTAATTTCCTTTGTAACATTGAAATGATCATTTACAAGGGTACTTGTAAAATACACTGGTTAATATGCAAACACCGTAAAGGAAAAAACACCTGTAAGTCATCAACAAAAACTAAACGTGAAGAGCATAAACCTCAcctttttttacaataaccaAGTTGAGAACGCTCAGATTGGCATCCACAATGCAACCTCGGACAGATTTACGCTTTCT------------------------------------------------CTCTCCGGTTCTCCTTGGTCTATAACAGGAATGCCCCTTGCTCAGTAGCAAGCGAACTCGGCCATGAGTCAAGA----CGCCTTGCTTCATAGGG-AAACCTTGCTTGTCGTTCCCACCACTGATCCGGACCACATAACCCTG

a score=7309
s chr3           66563412 135 + 160039680 CCTTGCCCTTTTCATCTAAAGCGTCAGCAAATACTTTTGTGGTCAAGTGCTTCTGATAGAAACTACAAAACTTGCATGCATTGTTCTCTTCAATGAGTTTCTGACACCTGGTGGCTGGGAAGGAGATGTTCAGCT
s HiC_scaffold_1 79515841 135 + 233722169 CCTTCCACTCTTCTCCTAGAGAGTCAGCAGCAACTTCTGTGGCCATACGCTTCTCATAGAACGTACGAAGTTTACGTTCATCATCCACCTCAATGAGTTTCTGGCAGCCAGTGGCGGGGAAGGAGATGTTCAGCT

a score=5483
s chr3           66978181 151 + 160039680 GTACCTGTACTCGGGCCTCAGAGAGCCCCAGTCGCTGGCTCAATTCCTCGCGCATGAAAGCGTCTGGATAGTGGGTCTCATCGAAAAGCCTCTCCAGCTCGTTGAGTTGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTGCTTGATTTT
s HiC_scaffold_1  3560817 151 + 233722169 GTACCTGGACTCGCGCCTCTGTGAGCTTCGCCCTCTGCGCCAGTTCCTCCCTGGTGTAAATGTCAGGGTAATGGGTTCTCTCGAAAGCACGCTCCAGTTCCTCAAGCTGCTCGGCTGTGAAGGTGGTCCGGCTTCTGCGCTGCTTCCTCTT

a score=4595
s chr3            66978183 154 + 160039680 ACCTGTACTCGGGCCTCAGAGAGCCCCAGTCGCTGGCTCAATTCCTCGCGCATGAAAGCGTCTGGATAGTGGGTCTCATCGAAAAGCCTCTCCAGCTCGTTGAGTTGTTCCAGGGTAAAATTGGTCCGACTTCGCCTCTGCTTGATTTTGGTCT
s HiC_scaffold_1 115560073 154 + 233722169 ACCTGTACCCTGGCCTCAGTCAGATCCGTGCGCAGAGCCAGCTGTTCCCGGGCGTACACGTCAGGGTAGTGAGTTTTCTGGAAGACTTTCTCCAACTCCTCTAGCTGGAACGTGCTGAAGGTGGTACGATTACGGCGCTTCTTGCTCTTGTTCT

a score=7339
s chr3            67013317 350 + 160039680 TTTTAATTAGAGGCATAAGTCACTTAACAATAGG-ATACATTTTTGGCAAATGTATCACTAGGCAAATTTG---TTGTCTGAACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTC--TGTAGATCATGCCACTCTTTCAGATAGTAAACCTTCTCTTTAAAAATAACTAGAAGTACATTA-GAAATAACAATGCA--TATAGCATAATAGGCATA----TAAGCTTGTAACATGGTTGTCATTTTTAGTGTTATACACTTTACATAGTTTTGAATGTCATATTTT
s HiC_scaffold_1 166853018 343 + 233722169 TTCAAAATACAGTCCTGTGTTGCTTAATACCAGGTATGCAATCT-GATAGATGCATCATTAGGCAATTTCTCCCTTCTATAAAGGCCATAGAGTGTACTTCTACAAACGGAGATGGCACGGGTCTGTCAGATGACATGGCCTCTTGTTGCAATCAAGAGGTACAGTAAGT-GGAAATTCCAGAAGCTGCTGCCAGTGTAATACAGTGTacttttt----tagtacatgtttttgT-----GTTAGTAGGAATATACTACAAAATAATGATAAAGCTATAATACAGTAAATACATAGGTAAGCCTTTAACATAATCAT---------TGCCAAGTATTATATATAATTACGTTTGGCACATTTT

a score=4697
s chr3            67013326 123 + 160039680 GAGGCATAAGTCACTTAACAATAGGATACATTTTTGGCAAATGTATCACTAGGCAAATTTGTTGTCTGAACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACA
s HiC_scaffold_1 179682329 116 + 233722169 GAGTCATCTGTCACTTAATGGTGG-------TCTTGTGAAATATGTCGTTAGGCAAATCTGTTGTGCAAACCTCATAGAGTATACTTATACAAACCAAGATTTTGTAGGCAAATTATTccaca

a score=7022
s chr3            67013364 376 + 160039680 AAATGTATCACTAGGCAAATTTGT---TGTCTGAACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTCTGTAGATCATGCCACTCTTTCAGATAGTAAACCTTCTCTTTAAAAATAACTAGAAGTACATT---AGAAATAACAATGCATATAGCATAATAGGCATATAAGCTTGTAACATGGTTG-TCATTTTTAGTGTTATAC-------------ACTTTACATAGTTTTGAATGTCATATTTTTCTAATAGTGGAA---------------------CAGC----CTATCAGTATGTA--TAATACACTGAACTATGAAATTAGAATGGCTATGATAGTAATT
s HiC_scaffold_1 121535791 411 + 233722169 AAATGCATCATTAAATGATTTTGTCTCTGTGTAAACATCATACAGTGCACTTACACAAGTCTGTGTAGTATACATCAATCACTTGATATGGCCCTTTGATGCAACCAAGAGACACAGTAAACACAAGATTTATGAGGCTGATGCTGGAGTAATGTGGCATattgttttatagta------ttttttagtAAGTAGAAGGATTACATtctaataaacattaaaacatataaggt-ataaatacataaatcagtaatatggtcattcaTTTTCATTGGTATCTTGTATTTGGATCAAGTATATGTAATTGTATGGGCTATATTTTCCTATGATTAGAAGTAAAGCACATTTGCTTATACCAGCAATTCCACCAACACATAAGTAATGCATTGCACTATG-----ATGACAGCTATATTAATGATT

a score=5120
s chr3            67013384 269 + 160039680 TTGTTGTCTGAACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTCTGTAGATCATGCCACTCTTTCAGATAGTAAACCTTCTCTTTAAAAATAACTAGAAGTACATTAGAAATAACAATGC------ATATAGCATAATAGGCATATAAGCTTGTAACATGGT-------TGTCATT-TTTAGTGTTATACACTTTACATAGTTTT
s HiC_scaffold_1 167055806 277 + 233722169 TCATTGTGTACACATCATGGAGT--ATTGG-ACAAACCTACTTGGTACCAGTCAACCATGCCAGATCTTCCCTTGATGCAAGTGAGAGATGTGGTAAACAGCAGATGTATGAGGCTGCTGTGGGCTCACGGCAGCAAACTTTTTGACAGCAAACTTCCTTTATATAAATA---GGAGGTGTATACTCAAAAATGATGTCTTAAAGTGCAGGATAGTGAATATAAAAACCAGTAACATAGTCATTTACTATCATTATCGAGTGTTATATGTGCTATACTTTTTT

a score=5610
s chr3           67013394 465 + 160039680 AACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTCTGTAGATCATGCCACTCTTTCAGATAGTAAACCTTCTCTTTAAAAATAACTAGAAGTACATTAGAAATAACAATGC------ATATAGCATAATAGGCATATAAGCTTGTAACATGG----TTGTCATTTTT----AGTGTTATACACTTTACATAGTTTTGAATGTCATATTTT------TCTAATAGTGGAACAGCCT-------------ATCAGTAT--------GTATAATACACTGAACTATGAAATTAGAATGGC--TATGATAGTAATTCTTCACCTTTGTTATAATCCAATTGGGTTATCCTGTCTGCACAGTTTATTGGTGACAAAACCACTACTATGGGGTACATGTCTGTTCAGTGTTAGGA-AGCTGAGACTGGAGAAGTCAGT
s HiC_scaffold_1 29881848 480 + 233722169 agctctaaaaggttcaccatcataa---------GTATAGGTCAATCACCAGACATGATCACTTGATGCAACCAAGAGATATGGTAAACAGGAGATGTACAAGATTGCTGCATGTGCAGCACAGTATACTATTTTACAGTAAACTGTTTTCCTAAGTAAA---AGGAccacatatcaa--aacaatgtttAAAAGTATGGTATAGTAAATACACACCCCCCTAACATAGTCATTTGTTACTATTATCAAGTATTTTGTACTGTTCCTCACTGTATTTGCCACATTTTTAAACATCTGAGAGCACAGCAGACTGGAGAACCTCAGCATCAGTACACAAATGAGCACAGTGCATGGTAC-AAGATGTCACAGCAGCAGTATGATAA-----------CTCAGTTATAATCTGATGGACCACTAGCATATATGTCATTGGTTGTTGACTGAAACATTGTTATACAGAGCACAAGTGT---GTGTTAAGAGGGGTAGAAATAGAGAATTTGGT

a score=6882
s chr3           67062729 528 + 160039680 TTAAGCCATGGATTCCCAGGAAATGAGCGCCAGCAGTTTGAATGCCTTCCATTGGTCCT--CAGTGTGATTCTGTCTACTGTGGCTGGAGCAGCCTGGCTCTTTAGTTGAACTCCAGTGCCTTTCCCTTTAGCTTCCCTTTTTCCTCCCTGGTTGTTTTTTCCTCACCCATTTCAGGAAGCTGTGTG-ACTCT------------TAAGCACAAGCCACATAATTATTGTCTTGGGAGACTTTCAGCCATAATTT-CTTGTGTACAGTGATGCCCGTGGCACACAGGATGAAGTGGCTGGGTGATGCAAATAGCCCTTCCTGGTTTGCCATGACAATGCATATGAAGCATTCTTTTAGAACAGTGTTCCATGTCCTTGATGTCTATAATATCAGTCTTCTCATAGATTCTCATGTACATGGCCAAAGAAACAACTCTATG-TTTCCTAAAAGGCCTAGGAAACATATAATGGTGCCCCTCCCTATTCCGTTTGTGTTTCTTCTCCTTTTGGTGTGACTGGAAGATGGAGACTGAAGCTGAAAGCA
s HiC_scaffold_1 32421026 456 + 233722169 TTATTCCTTGAATTCATAGGGAGT---CTCCAGC--------TCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTG----GGCTG---CAGGctggcattt-----------------ctttctttttgtcatc-------------------ttttttctTGATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGATCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGC----------TGTAAAT-GCTCTTCCAATCTGACCATGGGA---CATCTCTGGCATTCTTATGGA-CAGTAC-CCACTCCCTTG---TCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCTCAggtt--ttttccctttctcatttcTGCAAATT--------------AGTAGAAGAGAGAAATTCTAACCAAAAGCA

a score=14799
s chr3           67062729 566 + 160039680 TTAAGCCATGGATTCCCAGGAAATGAGCGCCAGCAGTTT-GAATGCCTTCCATT-GGTCCTCA----GTGTGATTCTGTCTACTGTGGCTGGAGCAGCCTGGCTCTTTAGTTGAACTCCAGTGCCTTTCCCTTTAGCTTCCCTTTTTCCTCCCTGGTTGTTTTTTCCTCACCCATTTCAGGAAGCTGT-GTGACTCTTAA------------GCACAAGCCACATAATTATTGTCTTGG-GAGACTTTCAGCCATAA-TTTCTTGTGTACAGTGATGCCCGTGGCACACAGGATGAAGTGGCTGGGTGATGCAAATAGCCCTTCCTGGTTT-GCCATGACAATGCATATGAAGCATTC-TTTTAGAACAGTGTTCCATGTCCTTGATGTCTATAATATCAGTCTTCTCATAGATTCTCATGTACATGGCCAAAGAAACAACTCTATGTTTCCTAAAAGGCCTAGGAAACATATAAT-GGTGCCCCTCCCTATTCCGTTTGTGTTTCTTCTCCTTTTGGT--GTGACTGGAAGATGGAGACTGAAGCTGAAAGCAAATTTTCTTTT---------CTTTTTTTTTTAAATTATTACATTGTT
s HiC_scaffold_1 80725745 568 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTAT-------GGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttcc----GATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATATAGTA------------ACATTGTAGA---CTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTAC-CCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCCAA-GAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGT---TCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAAGTTAATGTATGTTTACAGCAAGACTGTTTCTTTGGA--TACCACACTGTT

a score=14696
s chr3           67062730 543 + 160039680 TAAGCCATGGATTCCCAGGAAATGAGCGCCAGCAGTTT-GAATGCCTTCCATTGGTCCTCAGTGTGATTCTGTCTACTGTGGCTGGAGCAGCCTGGCTCTTTAGTTGAACTCCAGTGCCTTTCCCTTTAGCTTCCCTTTTTCCTCCCTGGTTGTTTTTTCCTCACCCATTTCAGGAAGCTGT-----------GTGACTCTTAAGCACAAGCCACATAATTATTGTCTTGGGAGACTTTCAGCCAT--AATTTCTTGTGTACAGTGATGCCCGTGGCACACAGGATGAAGTGGCTGGGTGATGCAAATAGCCCTTCCTGGTTTGCCATGACAATGCATATGAAGCATTC-TTTTAGAACAGTGTTCCATGTCCTTGATGTCTATAATATCAGT-CTTCTCATAGATTCTCATGTACATGGCCAAAGAAACAACTCTATGTTTCCTAAAAGGCCTAGGAAACATATAAT-GGTGCCCCTCCCTATTCCGTTTGTGTTTCTTCTCCTTTTGGT--GTGACTGGAAGATGGAGACTGAAGCTGAAAG----------CAAATTTTCTTTTCTTTT
s HiC_scaffold_1 16174762 540 + 233722169 taTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG----AAGTGTGCTTccct-------gggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtctt---ttttacttttctgatcattttc-cttgATACATTTCAGGAAGCTATCACAACTCTGAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCAT-------------GCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTAC-CCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGT---TCATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGACTGAAAGTCTAGTCTTTcaaatcttatattatttt

a score=4330
s chr3           67355563 66 + 160039680 GACCCTGACAGCATCCCCACGGCTATCAAGTACCAAGATGACAATTCTCTAGCTCATCCAAATGTG
s HiC_scaffold_1 30443565 66 + 233722169 GAGCCAAGCAGCATCCCCACTGCTCTCAGGTACCAAAATGACAATTCTCTGGCTCATTCGAATCTG

a score=7357
s chr3            67576151 180 + 160039680 CTCAGGTGATAGGACGTTCAGTCTGGATTTGGAGTCTGACCACAGTTGCTGGTTCAGAATCCTGGCATTATTGAGATCATGCG---------CTATTCTCCTTGCATGACATATAGGGACTTTAGACTTTAACTGGACACCCCCAGCCACATTCAAAAATACACTAGCCACAAGCAGTCAGAACAACAG
s HiC_scaffold_1 225546859 188 + 233722169 CTCAGGTGACAGGAAATTCAGTCTGAATTTAGAGAGCAAAGACAGTCTCTGGCCCAGAGTCTTGGCTTTATTGAAGTCAAGCATcatcttcctcattttccttgaGTGACGGATAGGGACGTCCGACATCAACTCGACGCCACCCGCCAC-CACCACGTCGTACTGGCCGGAAGCAATCAGGCCAACAG

a score=11487
s chr3            67867913 421 + 160039680 ACAGTGAAACTACAAGG-----AAAGTGTAGTCGCGGCAGCTCTCTGACATTCTACTTTATTAGATGTCACTTTATAATTAAAAATTTGAGTGGCAGAAGTATGAGTGCCCAGAAAAATGATCTGGACGACCATCATGCTTTGCAGCCATATTCCGGGAACAAAGATGAGACTCCAGCACAGAATACTGTGTTCATATTGACCATTCTTTTCCTTCCAAAAGATGAAGAAAGAG-AAAATGC-TCGAGGGTCAGGATTGCAGAGAGGGAAATTCTTATTTGAAATGCCATTGAAACCATCTCCTACCATGTAACGCTTCTACAGGGTTGAAGCTATAGATATTAGAAGCAAAACAAAAAGAGCCAGACACCCTGGGGGAAGGCATCCATCTTGATTATGAAATTAATTAGAAAAATAAAAGTGCTTTT
s HiC_scaffold_1 216534745 374 + 233722169 ACATTAAAAATACTTGGTTTACAGAGTGTAGCTGTGGCAGCTGTCTGACATTCTGCTTCATTAGGTGTGAATTTATAAGTACAAGTTTTAGTGGCAGAAATATGTGTACCCAGAAAGACAGTTTTGAGAATCTTAAT-CATCGcagcaatcatcaagaa----------------aatacATGATACTGTG-----------------------------AGATCCAAACAGGGAAAAATGCTTTAAGAGTTAGGTACTTGAAGAGGAAAATGCATGTTATAAATATCATCAAAAGTATCCTCTACAAGATAAAATAT--------TAGAAGCAGCAGatattcaaaacaatacaaaaggaGTTAAATACCCTACAACAAGACATCAATATGTATTATGAAGTTaatttgaagcacaaaaacactttt

a score=7866
s chr3            67896128 504 + 160039680 AATGGCATTTCTTTATAAACCGTGTTTTATATGATTATTGGTGCATGTTAGTTGGACATATTAATGAGTTTCAAAGTGACAGTTCTGTACATACAAATTACATGCTTCGATTGTATTCACCCTCCCACGGGTTCTGTCTCATCAt--tctttccctccctccttatctcttccattccctgtccctagtaatccctctaccactttcaagttggctttcta-------aattctagttatctcatctgcgagaacacaagacatacttgcttttctgcatctgacttatttta-tttacatgatgaccattagttgcatccattttcctgcaaacaatgcagtcttattatttgctatgggtaaataatgt------------------------tccttaatctattcatctagtgatgtgtgttagaccaactctataacttggctactgtgaatagtgtcacaataagcttttccaccattcaggtatttcttatgcaagcatacttcatttcttttagttatatgcccaggagt
s HiC_scaffold_1 102290712 484 + 233722169 AATCATAATTTTATGTTCACAGGACTTAATAGTTTCATTAGTTCATATTAGTAATACAGAATAATAGGTTTCAATTTGACATATTTGCACATACATGTAACATACTTTGATCATATCCACCTCCCC------CATTACCCACCATCGCCTTTTCCTTCATCCTCTTCTTTT----------TGTCTAATAGTCTCTCATCTGCTTATATGtcatctttctctttgtttcctccTAGTTGCTACGGATGAAGGAAAACATGTGATAC-----GTTCTGAGACTGGATTATTTTGCTCTATGCAATGGTATTcagtttcatccattttcctgagGATGACGTGATTTCATTCTTCCTTAT-AGTGAATACTATTGCCCTGTGTGTATATGCCATATCTTCTCTATCtactcatcagttgatggacgcCTAGGCTGTTTCATAGCTTAG--------------------------------GCTATGCTGATATCTTTATAGCATAttcactttaattcttttgggttAATGTCAAGGAGT

a score=3910
s chr3           68642838 88 + 160039680 CACCAAATGCTTGACCAATGGGATTACCAAATCTTGGAGGCCCCAAACCTGTGAGCTAAGTAAACTAGCTTTCTTTATAAGATGTTCA
s HiC_scaffold_1  1036834 85 + 233722169 CACCAGATGCTGAACTGATGGGGCTGCCCAATCTTGCAGCCCCTAGAACTGTGAGCTAACCAAATT---TTTCTTTGCAAAGAATCCA

a score=4117
s chr3            68648326 155 + 160039680 GAACAAGCAGTTGTTCTGCAGATGTGTGTCAAACTAAAATCCCGAACGTCTTTA-----TTGAACCGTTACAGATGGGGACCAGAAAGAAATGCCCAGCCCTGAGAGGGCTTCTCACAGCCACCACTAGCAGAGCTAGGTGACAGCTGGAAAAGTGTGCa
s HiC_scaffold_1 178536081 153 + 233722169 GAAAAAGTAATAGT-------ATTCATATTAAACCAAAATTCCTGAGACCAAGAGGAATTTGAACTTTTATAGATGCTAGCAAGAAAGAAATAACCAGTCCTGGGTCAAGTGCCCTCAGATACCAGCAACAAACCTAAGTAACTACTAGAAAAATGTCCA

a score=5114
s chr3            68758227 119 + 160039680 TATCTCTGGCCTGATGAATATTTTCCAACTGCCACCTAGCCTGCTGCCAGCACTTGTGGGAATTTATCCCAGAGCCTAGTCCTTTC--TTTCTGACTGATATCAGCAATGGCTTAATCAAC
s HiC_scaffold_1 178588084 121 + 233722169 TAGTTCTGGTCCAGCGGCTATTTTCCAACTGTCACCTGCCCTGCTGCTAGAAGCTGTGAAAACTCTTCCCAGGaacttgttatttctttttctggctaGTATGTGTGATGACTTGATAAAC

a score=5342
s chr3            68760349 202 + 160039680 GTCTAATGACGAAATCACATCACATTTC----CTTTCATTTACATCCATTTTTAATCGCAAAGTAGTATCAGACAATACTTTTT---ATACAACGGGTTAGGTGTTTT-------GTTGATTGGAG----GAGGTTGGCTTTGCAGACAGGGAAGGGCTGAAGAAAACAGAAACAAAAAACAAAAAGTAGATTGGTTGTTTCAGACTCACATTCCTTATA
s HiC_scaffold_1 122360739 212 + 233722169 GTCCAAAGAC-AAACTACGATACATTTAAAGATCTTAATTGGCATT-ATTTGTAATTC-----TAGGATCAGGCAACGCTTCCTTCCATAAAATAGAAGTAGTGTTTCAAAGTGGGCTGAGCAGAGAAAAGAATTTGGTTTTATAGA-AAGGAAGGCTGGAGGGAAACAGATGCAAAGAACAAAATGTAGATTGGCTGTTTCAGAGTTActtttcttgta

a score=3875
s chr3           68807358 248 + 160039680 CCCATAACCAAGG-----TTAATAAGAGGAAAGCAGGAGAAAGTTGT---GCCAAAGGTGC-TATGACACAGAAGACTCCAGAAATAAAGACCTAAAGATCCAGGGGAAATGGTCTA-CTTTTAAGCTTAGATTCTATAGCAAATAGACAACCTTGTAAA---------------------TGTG---------TAACTAAATGAAGTAGTTTATTCTGA---TGAAATAAACATCTTCGTA---------CTGCA-------TCCCTCCTAGGTATGGGGCAGGACCCCTCTGGAATAAGAGCCTT
s HiC_scaffold_1 15650921 302 + 233722169 cctataacaaaagacagattaacaagagaaaagcataacAAATTTATTTGGTCATAGTTTTATGTGACACAAGAGACTTCATAT-TGAAGATCAAAAACCCAACGTGAA----CCTAGTTTTTATACTTGAATTCAATGAAACAAAGGCATCCATAGAGAAACATGGTTAGACACAAAGGATATGATCTAATACTAACAGACTGAGGTGGAAACTTCAGAATCTGGCTTCAGGTTCTTCTTGACCCCTAGGTTGTAGCATTTCTCCCTCCTGGGTATAGGGTAGGACCCCTCTGGAATGAAGGTCTT

a score=8684
s chr3            68812778 388 + 160039680 ACTCACTGGAGCAAGTCTTTAACCTGGGCGGAATCTCCATATTCTGAAAATGA-TGCCTATGAGGACTGGTTGCCCTCCAAGGGAACAAAATCACTGCGAAGCTTCAAGCTCTTGAAGGACAAGACAACAGAGCTGCCTAGACATGTTGCTGCAGGC-ACAAATACAAACCCTTTGGTAGCTGGCACAG--------------CGAGCA-ACCATT--GCACATGCTGTCAATGTGCCACAGGAACAGTAAAAAGCTGGGTACAACTCAGGACCTCTTCC--AACATTCCCTCCCCAATTGCTCTGCCAGCAAAATGGACAAGTGCTGTTTAGAGAAAATATGTTTCACGTATCTCTTGTTAACAGCATTCCCATGCACGGTCCTGTTGGTGATGTGTATTTGTGTCAA
s HiC_scaffold_1 100945629 398 + 233722169 ACTGGCTAGAGTAAATCTTCAATATGGATAAAAACTTACTATTCTGGAAACAAATGCCTAAAAGGAC--ATTCACATATAAGAACGTTAAGTCAATGCCAAGTGTCAAA-GCTTTAAGGGGAGGATGAAAGCTTTGCTTGGGGACCATGTTGCAGGCTACAAACTGAAACCCTTTGTTATCTGGCTCAGAGTCCCGGGACCTTCAAGCATGTCACTAAGCACACTCTAGCAGTGCACTATA-----AATAAGAAGTCAGGGATGAACACGTTCCTTTTTCCAAAGATGCCCTTCTGAATTGCTGTTTCAGCAAAATGGAGAAGTACTATTTGGAGGGACCTCTTTCAAGATTTTTCTTGTTGGTAATGTTCCCATGCA---TCCTTTTTTTAATTGATAATCATCTTAA

a score=4799
s chr3            68889187 217 + 160039680 actaggtctgtcacacagggcttgggaaatgttgctattaaggggcctcacc-tgCATGGCATCCCACCAAACCTTACTGCTACAGAATCCACCAACAGTCTGAGAAACCTCATCAGGTCTGTCATGGCTTTCTCTTAGTGGCCCCTGTAAAGCCTGAGAACATGATGA-TAATTAACAAG---AATGGGGAGAGATAGATAGAATCAAGGAACTTCTCCCA
s HiC_scaffold_1 216898118 220 + 233722169 ATTATGCTCCTTAAGCAAGAGGTGATAAATGCTATGGTCAAGGGATCCAATTGTGCATGGACACCGAAGCAACTTTATTGATACAAAACCAAGCAATAGTCTGGGAGGCCTTATTAGATTTGTTTCAGTTTCCCCTTAGTAG--TCTATCTATTCTAAAAAAGTTTAGAGTGGTTCACAAGATAAAGAGGAGAAGCCAGAGAAAATCATGAGACTTATTCCA

a score=7224
s chr3            68900248 140 + 160039680 CTCTTCAATGTTTCTTATCCAATTTTTAATATTGTCAAAGGATTTTTCATTGGTGATGTCATAGACCAGCATAATTCCCATGGCTCCTCTATAGTATGCTGTCGTAATTGTTCGGAATCTTTCCTGGCCCGCCGTGTCCC
s HiC_scaffold_1 225675008 140 + 233722169 CTCATCTATGTTTCTAAGCCATTTGCTGATGTTTTCGAAGCTTTTACCATTGGTGATGTCATATACTAGCATGATACCCATTGCTCCTCTGTAGTAGGAGGTTGTGATGGTGTGAAATCGCTCTTGGCCTGCCGTATCCC

a score=3306
s chr3            69068066 47 + 160039680 CAGGCTGGGGATGTAGCTCAGTGGTGTTTAGCATGCTAGCACACACA
s HiC_scaffold_1 184369009 47 + 233722169 CAGGCTAGGAGTGTAAATCAGTGGTATCAAGCATGCTAGCACACACA

a score=12301
s chr3           69222536 504 + 160039680 TCTAAAAACCCCCAAAGCAAGCAAGCCCACATTCTTCTCCTCGGACTTGACTCAGCTGGGAAATCTACTCTGCTTTACCGGTTAAAGTTTGCTGAGACTCTCTCAACCATCCCAACCATCGGCTTCAACGTGGAAATGGTCCAGCTGCAGAGCAGTCTCACACTCACCGTGTGGGATGTTGGAGGACAGGAGAAGATGCGAACAGTCTGGGACTGCTACTGTGAGAACGCTCAAGGGCTGATGTACGTGGTGGACTGTTCCGAAGGCAAAAAGCGACTGGAAGACTCTCGCAAAGAGTTCAAACACATTTTGAAGAACGAGCACATCAAAAACACACCGGTCGTCATACTGGCCAACAAACAGGACTTGCCGGGAGCTCTGAGCGCCGAAGACATCACCAGGATGTTCAAGGTGAAGAAGCTGTGC------------AGCAACCGGAACTGGTATGTGCAACCCTGCTGTGCGGTCACTGGAGAAGGGCTGGATGACGGGTTCAGGAAATTAACC
s HiC_scaffold_1 30732245 495 + 233722169 TCTAAAATCTTCGGGAACAAGGAAATGCGGATCCTCATGTTGGGTCTGGACGCGGCCGGCAAGACAACCATCCTGTACAAGTTGAAGCTGGGCCAGTCGGTGACCACCATCCCCACCGTGGGTTTCAACGTGGAGACGGT---GACTTACAAAAATGTCAAGTTCAACGTGTGGGATGTAGGCGGCCAGGACAAGATCCGACCGCTCTGGCGGCATTACTACACCGGGACCCAGGGTCTGATCTTCGTCGTGGACTGCGCCGACCGCGAC---CGCATCGACGAGGCCCGCCAGGAGCTGCACCGCATTATCAATGACCGGGAGATGAGGGACGCCATAATCCTCATCTTCGCCAACAAGCAGGACCTGCCCGATGCCATGAAACCCCATGAGAT--CCAGG-------------AGAAACTGGGCCTGACCCGGATTCGGGACAGGAACTGGTATGTgcagccctcctgtgccacctcggGGGACGGACTTTATGAGGGGCTCACATGGTTAACC

a score=29601
s chr3            69319975 645 + 160039680 CTTCTCTCTTGCTTTTATTATTGTTATTATTTAAAAAAC------TTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAGGATCTGT--TCCCTCTCAGTGAGGATCATCAC--TGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACAT------------------------------------------------------------------------------------------------------------TGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAG
s HiC_scaffold_1 184103817 740 + 233722169 ctgctctcttttttttaaagtaataatgaC--AAACAACATTACTTTTAGTTGCATTTTTTTTATGATTAACTTATTCCCATGCCgtaagtttttgtttcttc---------tgggatatctttttcttctgtgcaACTTTCTCCTCTGGTTTAGGAACAGTTTATAGTCCTTTTTAGTAAGCATCATCACAACATGGCAGGGGGAGCTCATACACATGTTAATCTGGCCAAGAGCTCGGT--GCCCAGTAGCGCACCTCGGATGCTTTGTTCACCTGGGTGTGTTCAATGACAAGAGAATCTACATCTAAACCCTTCAGTTTAGCATTACTCTCTGCATTTTTAAACATGTGCAGC-AAAATTCAGTG--CTTTGTGGGCCACTGACCCTGTGCCCA-----ACTGTTTGCCTTGGGCACACCTACCAACTCCATCATTGTCATGCCAGAATGGCACACattggttttttgatttttttttttttttttttgtaccagggatcaaacttacaaccttgtgcttgccaggcaggcacctatgccactgaggtaaGTTCCTGGCCCCACACTGCTTTTTTAATGTGCCATCCTTCAGGTACTTGGTGGCCTTTTAGGTATACATACCCTTGATGCCCTGGGCAA-TTCCTGGGTATTcttaaaatatacacaaagaTTTGAGCCTCCTGATTTGCATGA----------TTTTCTGGGTTAAGAGAGTAATGAACCATTTTCACAAGTCACCTCAGGCCTCttacaggaagag

a score=26212
s chr3            69319980 643 + 160039680 CTCTTGCTTTTATTATTGTTATTATTTAAAAAACTTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATC--ACTGTGGCAG--GGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAGCTT
s HiC_scaffold_1 148612881 634 + 233722169 CTCTTTACCTAACTCTTctctacattttttaaactttatttgcaTTTGGTTTATACTTAGTCTATTCTCATGCTGTAAGTTCT-GTTTCTGTAGCTTCTCCTAGGATACCTTCTCCTTCTGCACAACTTCCTCTTCCAGGTTAGGAACCAGGCATTCCCT-TCAGTAAAGACCACCTTGCTGTGGGGGCTGAGGAGCTCAC-CATGGGTGAACCCAGCCCTGTGCTCTGGAAGTAC-TCAGGGCATCTTGGGTGCTTCGTTCACCTGGGTCCATCCAGTGGCCAGAGAGCCCACATTTAA-CTCTGCGGTTCAGCCTCCCTCTCTGCATTTT-AAGCA----------GAAGTCGGCACCATTT---GGGCCCCGTGCCTGTGCCCAACCCCGCCACTGGGCCTGAGCGCTGCTACCCACTCCAC-ACTGCAGTGTGGGAGAGGCACACACTGCTTCTCTAATGTGACACCCTTCAGACACCTGGGGACTTC-TAGACGTGCACACCCTTGCTGGCCTGAGCTGTCTCACGGGTGTTCTTAAAGTGAACACAAAGATTTGAACCTCTCGATTTGCATGATTTGGGGGCGTTCTCTGGATCAAGAGGGTAGCGAGCCATTTTCACAGGTCATC-CGGACCCCTGACCGGAAGAGCCT

a score=37326
s chr3            69319997 621 + 160039680 GTTATTATTTAAAAAACTTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATCAC--TGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATT-ATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAG
s HiC_scaffold_1 209881284 620 + 233722169 gtttttttttaac---ttttattttcatttattttatgcttaatTTATTCCCATGctataatgttttgtttctttagtttcttctggGATATCTTTTTATTCTGTGCTACTTCCTCCTCTGGTTTAAGAACAATTGATTCCTTTTCAGTAAGGATCATCTCAGTGTGGCAGGGGGAGCTCATGTATGGGTTATTCTGGCCATGAGCTCTGTAAATACAGCAGTACATCTTGGGTGCTTTGTTCACCTGGATATGTTCAATGACCAGAGAATCTACATCTAAACCTTGAAGTTCAGCATTACTCTTTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTGGGCCACCAACCCTGTGTCCAGCCCCACTGTTTAGCCTGGGCACACCTACCATCTCCACCATTGGCAACGCCAGAATGGCACACAGTGCTTCTTTAATGGGACTTCCTTCAGGTACTTGGTGGCCTTTCAGATATGCATACCCTTGATGGCCTGGGTA-TTAAACATG-------AAGATGAACATGAAGATTTGAGCCTCTTGATTTGCATGATGTTGGGGGATTTTCTGCGGCA--AGAGTAGCAAACCATTCCCATAGGTAACCTCACGCTGCTTACAGTAGG

a score=28979
s chr3           69320004 640 + 160039680 TTTAAAAAACTTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT---------CCTCCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCA--TCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCA--CCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTG-------------------------------------------------------------------------------------------------------------------------CTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTC------------------------------------------CCA---------------------------------------------------------------------------------GGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAGC----TTATTATTATTATGATTTTTTAA
s HiC_scaffold_1   441020 890 + 233722169 tttaaaaatttttatttgcatttattttatgcttGATTTATTCCTGTGccataagtttttgttttttcagtttcttctgaggtatctttttcttttgtgcaacTTCATCTTCTGGTTTAGGTACAATTTGT-CCTTTTCAGTAAGGATCCCCTCACTGTGGCAGGCAGAGCTCATGTATGGGTAAATCCAGCCATGAGCTCTGTAAATATGGTGACTTGCCATGGGTGTTCTGTTCACCTGGGTATGTTCAATGGCCACAGAATGTACATCTAAACCCTTCAGTTCAGCAGTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTGGGCCATTGACCCTTGGTCCAGCACCACTGTTTGGCCTGGGCACATCCCTACTAACTCCAGCATTGTAATGCTGGAATGGCACACAGTgcttctctcattctctctctctctctcttttggtggTATGGgggatgaactcacaacctcatgcttgcaggacagaggcaggcacttatgccactgagctaaatccctagcactgcacatttcttctttaatgtgaCATCCTTCAGATACATGACGGCCTTTTAGATGTGTGCACCCTCAATGGCTTGGGCGGTTTCATGggtgttcttttttaaatcttttttttttttttttttgtaccaaggattgaggATCTAATTCACGACctagctcttgccaggcaggtgcttatgctgctgagctaaatcctcagcctcttcAGGGGTGTTCTTAAAGTGAGCACAGAGATTTGAGCCTCTTGATTTGCATGA----------TTTTCTGGGTCAACAGAGCAGCAAACCATTTTCACAGGTCATTTCAAGCCACTTACAGGAAGAGCCACTTTATTTTACATAGGAATTTATAA

a score=23195
s chr3           69320014 649 + 160039680 TTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATCAC-TGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAA-TCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCG-TCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGG-GTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAGCTTATTATTATTATGATTTTTTAATATCTTGTTATATCATTTT
s HiC_scaffold_1 16975589 607 + 233722169 tttatttacatttacccTATGTTTAATTTATTCCTGGGctgtaagtttttatttcttcagtttcttccagggtatctttttcttctgtgcaACTTCTTCCACTGGTTTAGGAACAGTTTGTTCCTTTTCAGC-AGGATCATCTCATGTGGT-GGGGGTGCTCATGGATGGATTAACCAGACCCTGAGCTCTGTA-------------------------TTGTTCACCTGGATGTGTCCTATGACCAGCGAAATCTATGGCTAAACCCTTAGTTCAAGCATT--GCTCTGCATTGT-AAGCATGTACACCCTAAATTCAGCACTTCTTTCAGGCCAGTGACCCTG-ATCCCACCCTGCCA----GCCTAGGCATGACTGCCAGTGCCACAGTTGTACCCC-AGAATGGTAC-TACTCCCTCTGTTAGGAGTGACTCCTTCAGACACTGGATGGCCTCTTGGATAT-CACTCCTTTGATGACTGGGG--------------TTCTTAAACTGAATGTGCAGATTTGACTCTCCTGATTTGCATGATTTTGTGGGAGTTTCCTGAGACCAGAGAGCAGCAGACCACATTC-TAGGTCACCTCAGACAGCTTACTGGAATAGGAaagcatttttaagtttttct--tctctcagtatgttttttt

a score=16686
s chr3           69320014 603 + 160039680 TTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGG----ATGTGTTCAGTGACTAGAGAATCTAC-ATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTG--ATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAA
s HiC_scaffold_1 17368554 525 + 233722169 tttatgtacatttattttgcaCTGAATTTGTTCCTGTACCATAAGTCTTTGTt----------cttcagggatttttttttcctttgtgcagtttcctcttctgtgttaagaaccatttgtttttctgtagcaAGGACCATCTCCATG------------------TGATTTAATCTTACCATGAGCTCTGT-TGCCCACCAGCTCATCTTAGGAGT-TCATTCACCTGGTACAGTATGTTCAGTGACTGCAAAACTTAAGAGCTAAACTCTTAAGTTCA--AGTTTACTGTGTGTCTGTAAGCAC-TGTA--------------------TTGGGCCACCAACTCTGTGCCCAACCCCACAGTTTGGTCTGGGCACATT--------------------------------ACAGAATGTTACTGTAATGTGACACTTTTCAGATACTTGGTGAGTTGGTTGATACCCATACTTTTATCATATCCAGG-CAGTTTCATGGAGATTCCTAAAGTGAACAAAAAGAT--------CTAGATTTGCATGCTTTTGTGGGGTTTTCTAAGCCAAATTAATAGAGAACCACTTTCACAGATCACGTCAGGCCATTTACAACAA

a score=22494
s chr3           69320014 622 + 160039680 TTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT-------CCTCCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAA-CCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTG-----TCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAG---------------------------------------GTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAGCTTATTATTATTATGA
s HiC_scaffold_1 94528512 643 + 233722169 tttgcttgcacttattttatgctgaatttattccca-----taaatttttatttcttcagtttcttctgaGACATCTTTCTTATGTACAACTATCTCTTC-AATTTAGGAACAGTTTGCCCCTTTTAATTAAGGGTCATGCCGGTGTTTGAAGG-GTTCATGCATGCAATAATCAGGCTACAGG----GCAAGGTCAGCAGTGCAT-TCAGGTGCTTTGTTCACCTGGATGTGCTCAATGAATGCAGAATCTCCATCTAAAATTCTAAAGTTCAGCATTATGCTCTGCATCTTTAGGTACATGTTGCAAAG-TCCAGCACTGTTTTGGGGCCATTGACTCTGTGTCCAGGTCAACTGTTTGGCCTGGGCACACTTCCCTCTTCCACTGTTCTAATGCT-GAATGCCATACGTTACTTCTTTaaagtgatattttatatttcagataCTT-GCAACTTTGCCAATATG----CTCTTTTTGGCCTAGGGAGTTTCCCTTCCCCTccaccttctctcctttcccttccccactCCTCTCATTCTCTTAAAGTGATCATAAAAGTTTGAATCTCATGATTTGTATAATTCTGTGAAGTTCT--------AGAGAAT----AGCATTTTCCACAGGCCACTTTCAGCAGGTGACAGGAAGAGCCCAGGTGTATTTTGA

a score=20665
s chr3            69320014 622 + 160039680 TTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCTCCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATCACTGTGGCA-GGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCA-GCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAGCTTATTATTATTATGA
s HiC_scaffold_1 183761921 582 + 233722169 tttatttgcatGTCATTTATACTGAATTTATTTCCA-----TGTATTATTATTCCTACAGTC-CTTTTGTGCAA---------CTTcctctttttgtttaaaaatagctCATTCTATTTTGGTGAGGATCATCACCATGTAACAAGGGTGCTTGTATAAGGGCTAATCTGACCATGAGT--------------GGCACATCAAGGGTAACTTGTTCACCTGGAAATATTCACCGAGCAGATAATCTATGTTTAAAC--------TCAGAATTACTGT--GCATTTTAAACTATATGTAACCAAAATTCTTGCAATTTTTTATGGTCATCAGTCCTGTGACCTGAGC-ATTGTTTGACCCAGGCACACCAACTGACTCCATCATTGCAACACCC-AGTGGCAgccattgtttctttaaaatgacaTCTTTCAGCTACTTGGTGGTTTTTCAGATATGCACATCTTTGATGCTCTGGGCCGTGTCATAATTATT-TTATACTCATCAAGAGAATTTGGACCTCTTGATTTCCATGATGTTGTGGGGGTTTGTGCATTAAGTAAGTAGTGAGGCATTTTGACAGATCAGTTCAGGTTGCTTACAGGAGGAGCTATTTCCCATCCTGA

a score=13230
s chr3           69320016 396 + 160039680 TATCTGCATTTATTTTA--TGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT---------CCTCCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATCAC--TGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTG----TTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTC-CACCATTATACCTCTGGAATGGC
s HiC_scaffold_1 99138122 380 + 233722169 tatatacatatatataaaatgctaAACTTAgtctaatg-----------tttttattcattttcttctgtgataCTTTTTTCTGCTGTGCAACTTCCTCTTCTGGTTTTGGAACAGTGTGTTCCGTTTCAGTAAGTATCATCTCAGTGTGGCA--GGGAGCTCATTTATGGCTTCATCTGACTCTGAGTATAGT----------GAGCATCTTGGAGGTTTTGTTCATTCACCTGGATATATTCAGGGACTACAGAATTGACATCTAAACTC--AAATTCAGTGTTA--CTCTGCATTTTTAAGTAT---CAGAGAAA--TCAGCACTCTTTTTGGGTCACTGACCTTGTGTCTAACAT--CTGTTTGGCATAGATAGATCTCTCCCCACTCAGCATTTTAACACTGGAGTGAC

a score=21221
s chr3            69320028 592 + 160039680 TTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAGGA-TCTGTTCCCTCTCAGTGAGGATCATCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTA-GGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAG
s HiC_scaffold_1 187826452 574 + 233722169 TTTTATGCAgaattaatttctgttttataggTTTTT-----TTCA-CCCCTTCTGGAACATCTTTTCCTTCTGTGTAGCCATCTCTTTTGGCTTGGGAAAAAATCTGTGCCTTTTCCACAAAGATCCTCTCTTTGC---AGTGTGCACATGTGTGGGTTAACCCAAGCCTGAGCTCAGCACGTG---CTGTGGCCCTTATGGGGCTTTGTGAATCTTG-TGTGCGCAGTGACTGGAGAGTCT-CAGTTGTACCCACAAGCCCAACACTACTCT--GCATTTTCAAGCTTGTGCAGCAGAAACCCAGTCCTCTTTTT-GGCTACCAACACTGAGTCCAGTGCCTCTGTTTGGCCTGGGGACA--GGCCACCTCTGCTACAGTGACACTGGAGTTGCATATATTGCTTCATTAGGGTGAGATCTTTCTGATACTTTTTGGCT--------ATGCTTACTCTTGGTGGCCTTGGCAGTGTCACAG-TGTTCTTAACATGAACATGCACATTTGAACCTCTTGAATGGCATGGATTTGTGGGATTTCTTGGGTTAAGAGAGTAGTGAACAAT-TTTTTGGTTCACCTCAGGCCAATTGTAAGAATAG

a score=16637
s chr3           69320041 578 + 160039680 TTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT---------CCTCCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCTCAGTGAGGATCATC--ACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGAT-------GTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------AAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCT--------------------------------------TTAAAGTGTCGTCCTTCAGACAC-----TTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGA
s HiC_scaffold_1 84130645 757 + 233722169 ttttttttatgccATGTATTTCTGTTTCTCAAGTTTCTTTTAAGATAGCCTTTTCATTGATGTAACTTTCTGTTCTG--TTAGGGGCAGTCTGTTCCTTTTCAGTAAAAGTCATCTTAATGTGGCAGAAA-AGCTCACATATAGGGTAAGTCAACCATGAGTTCTGTAAGTACAACAGTGAATTGTGGGTGTTTTGTCCCGTAGAAGATACCCAGTCTTCAGAGAACAGAGAATTTATATCTAAACTCTTAAGTTCAACAGTACTTTCTG--TTTTTAAGCCTGTACAGCCTTTCACTTTCACTCTCTCTAgttctccttctttctttgtttttttgagacaggatctcactatgtaattcacactggccttgaactcactacagtTCTCCtgtctctgagtgctgggattacaggtgtgcaccactacaccacTTCGGTAATCTTTTTGGGTCACTGTCCTTGGGTCTGGCACCTCTGTTTAGCCTGGGCACAC-TAC--------------TAAAACTGGAATGGCACACACTGCATTCCCATAATGAATAAATTGTGTATTGtgaacatgtgctaataaaaatgttattttaaaggcAAAGATACATGTGGCTTTTCCAGTGTACATTTTCTTGCTGGCATAGGCAGTTTCACATGCATTCTTAGAGTGAACATGAAGGTTTGAATGTCTTGATTTGCatgattttgtgttgttttct-ggTCAAAAGTGCAGCAAACTTTTTTCACCGATCACCTTAGGCTGCTTACAGGAAGA

a score=10929
s chr3            69320269 369 + 160039680 CCTTAAGTTCAGCATTCCTCTCTGCA-TTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTCACCTCTGGCCGATTACAGGAAGAGCTTATTATTATTATGATT
s HiC_scaffold_1 191406478 331 + 233722169 CCTCAAGTTCACTGTTAGGCGCTGCACTTTTTACACATGTGCAGCAAAAATTCGGCACTTTCTTCAGGCCTCCGACCTT-------------CTCTTTGGCCTGCGCATA-----GGCCCACGTCAGTCCACTGTGGGAAGGGCACGCACGGCTCCTTTCAGATGCTG---------------GGGGCTCCTTGAATCTGC-TATCCTTG-TGGTCAGCACAGTCTCAC-TGTGTTCTTAAAGTGGACACAATGACTTAAATCTCGGGACTTTCATGATTTTGT--GGTTTTCTGGGTCAAAACAGTAGGGAACCA-GTTTACAGATCACCTTAAGCCACTTACAAGAGAagccttgttttcttttagtt

a score=10947
s chr3            69320313 283 + 160039680 AAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAACCATATTCGCAGGTC
s HiC_scaffold_1 186871252 268 + 233722169 AAAAATTTA---CTCTTTGGGGGCCAA---------GCCCAGCCCCATTCTTTGGCCTGG-TGCCACTCCCAAGCCCACTATtgaaacacccaagtggcacatATGGCTTCTTCTAGGTAACATCTTCCCAATACTTGGTGGCTTTTTAGATATGCATCCCCTTGATGGACTTGGCAGTTTCT-GGGCATTCCCAAAGTGACTGCAAAGATTTGAACCTCTTGATTTGTGTAATTTTGTCATGTTTGGGAGGTCAAGAGAATAATGAAACATTTTca-aggtc

a score=16732
s chr3           69335172 621 + 160039680 ATAAAATAAGGACATAGCACTTTATT-------------TTATGCTGAATTTATTCCCGGGCC---------------------ATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT---------CCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGAT-------GTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGC-----------------------------------------------AAA----------------AATTCA---------------------------------------------------------GCACTCTT---------------TTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGA-----------------------------------CATCCTTC---------AGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGA
s HiC_scaffold_1 84130575 827 + 233722169 ATAGAAtcagaatat-tcattttattcattcatttctatttatGTCAAATTTACTCTtatgcctatgtttcttttttttatgccATGTATTTCTGTTTCTCAAGTTTCTTTTAAGATAGCCTTTTCATTGATGTAACTTTCTGTTCTG--TTAGGGGCAGTCTGTTCCTTTTCAGTAAAAGTCATCTTAATGTGGCAGAAA-AGCTCACATATAGGGTAAGTCAACCATGAGTTCTGTAAGTACAACAGTGAATTGTGGGTGTTTTGTCCCGTAGAAGATACCCAGTCTTCAGAGAACAGAGAATTTATATCTAAACTCTTAAGTTCAACAGTACTTTCTG--TTTTTAAGCCTGTACAGCCTTTCACTTTCACTCTCTCTAgttctccttctttctttgtttttttgagacaggatctcactatgtaattcacactggccttgaactcactacagtTCTCCtgtctctgagtgctgggattacaggtgtgcaccactacaccacTTCGGTAATCTTTTTGGGTCACTGTCCTTGGGTCTGGCACCTCTGTTTAGCCTGGGCACACT-------------ACTAAAACT--GGAATGGCACACACTGCATTCCCATAATGAATAAATTGTGTATTGtgaacatgtgctaataaaaatgttattttaaaggcAAAGATACATG-TGGCTTTTCCAGTGTACATTTTCTTGCTGGCATAGGCAGTTTCACATGCATTCTTAGAGTGAACATGAAGGTTTGAATGTCTTGATTTGCatgattttgtgttgttttct-ggTCAAAAGTGCAGCAAACTTTTTTCACCGATCACCTTAGGCTGCTTACAGGAAGA

a score=22552
s chr3           69335192 602 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAA-TCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAA-AGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGG-GTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAG
s HiC_scaffold_1 16975599 556 + 233722169 tttacccTATGTTTAATTTATTCCTGGGctgtaagtttttatttcttcagtttcttccagggtatctttttcttctgtgcaACTTCTTCCACTGGTTTAGGAACAGTTTGTTCCTTTTCAGC-AGGATCATCTCA-TGTGGT-GGGGGTGCTCATGGATGGATTAACCAGACCCTGAGCTCTGTA-------------------------TTGTTCACCTGGATGTGTCCTATGACCAGCGAAATCTATGGCTAAACCCTTAGTTCAAGCATT--GCTCTGCATTGT-AAGCATGTACACCCTAAATTCAGCACT----TCTTTCAGGCCAGTGACCCTG-ATCCCACCCTGCCA----GCCTAGGCATGACTGCCAGTGCCACAGTTGTACC-CCAGAATGGTACTACTCCCTCTGTTAGGAGTGAC-TCCTTCAGACACTGGATGGCCTCTTGGATAT-CACTCCTTTGATGACTGGGG--------------TTCTTAAACTGAATGTGCAGATTTGACTCTCCTGATTTGCATGATTTTGTGGGAGTTTCCTGAGACCAGAGAGCAGCAGACCACATTC-TAGGTCACCTCAGACAGCTTACTGGAATAG

a score=16491
s chr3           69335192 620 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGG----ATGTGTTTAATGACTAGAGAATCTACG-TCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATG-GCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAGCCCGT-------CACCTTTACAAAA
s HiC_scaffold_1 17368564 543 + 233722169 tttattttgcaCTGAATTTGTTCCTGTACCATAAGTCTTTGTt----------cttcagggatttttttttcctttgtgcagtttcctcttctgtgttaagaaccatttgtttttctgtagcaAGGACCATCTCCATGTGAT--------------------TTAATCTTACCATGAGCTCTGT-TGCCCACCAGCTCATCTTAGGAGT-TCATTCACCTGGTACAGTATGTTCAGTGACTGCAAAACTTAAGAGCTAAACTCTTAAGTTCA--AGTTTACTGTGTGTCTGTAAGCAC-------------------------TGTATTGGGCCACCAACTCTGTGCCCAACCCCACAGTTTGGTCTGGGCACATT--------------------------------ACAGAATGTTACTGTAATGTGACACTTTTCAGATACTTGGTGAGTTGGTTGATACCCATACTTTTATCATATCCAGGCAGTTTCATGGAGATTCCTAAAGTGAACAAAAAGAT--------CTAGATTTGCATGCTTTTGTGGGGTTTTCTAAGCCAAATTAATAGAGAACCACTTTCACAGATCACGTCAGGCCATTTACAACAACATACCGTTTGATTGCCTCTTTATAGAA

a score=29325
s chr3            69335192 602 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAAGATCTGT--TCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACAT------------------------------------------------------------------------------------------------------------TGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAG
s HiC_scaffold_1 184103870 687 + 233722169 TTTTTTTTATGATTAACTTATTCCCATGCCgtaagtttttgtttcttc---------tgggatatctttttcttctgtgcaACTTTCTCCTCTGGTTTAGGAACAGTTTATAGTCCTTTTTAGTAAGCATCATCACAACATGGCAGGGGGAGCTCATACACATGTTAATCTGGCCAAGAGCTCGGT--GCCCAGTAGCGCACCTCGGATGCTTTGTTCACCTGGGTGTGTTCAATGACAAGAGAATCTACATCTAAACCCTTCAGTTTAGCATTACTCTCTGCATTTTTAAACATGTGCAGC-AAAATTCAGTGC------TTTGTGGGCCACTGACCCTGTGCCCA-----ACTGTTTGCCTTGGGCACACCTACCAACTCCATCATTGTCATGCCAGAATGGCACACattggttttttgatttttttttttttttttttgtaccagggatcaaacttacaaccttgtgcttgccaggcaggcacctatgccactgaggtaaGTTCCTGGCCCCACACTGCTTTTTTAATGTGCCATCCTTCAGGTACTTGGTGGCCTTTTAGGTATACATACCCTTGATGCCCTGGGCAA-TTCCTGGGTATTcttaaaatatacacaaagaTTTGAGCCTCCTGATTTGCATGA----------TTTTCTGGGTTAAGAGAGTAATGAACCATTTTCACAAGTCACCTCAGGCCTCttacaggaagag

a score=25695
s chr3            69335192 604 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAG--GGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAGCC
s HiC_scaffold_1 148612925 589 + 233722169 TTTGGTTTATACTTAGTCTATTCTCATGCTGTAAGTTCT-GTTTCTGTAGCTTCTCCTAGGATACCTTCTCCTTCTGCACAACTTCCTCTTCCAGGTTAGGAACCAGGCATTCCCT-TCAGTAAAGACCACCTTGCTGTGGGGGCTGAGGAGCTCAC-CATGGGTGAACCCAGCCCTGTGCTCTGGAAGTAC-TCAGGGCATCTTGGGTGCTTCGTTCACCTGGGTCCATCCAGTGGCCAGAGAGCCCACATTTAA-CTCTGCGGTTCAGCCTCCCTCTCTGCATTTT-AAGCA----------GAAGTCGGCACCATTT-------GGGCCCCGTGCCTGTGCCCAACCCCGCCACTGGGCCTGAGCGCTGCTACCCACTCCAC-ACTGCAGTGTGGGAGAGGCACACACTGCTTCTCTAATGTGACACCCTTCAGACACCTGGGGACTTC-TAGACGTGCACACCCTTGCTGGCCTGAGCTGTCTCACGGGTGTTCTTAAAGTGAACACAAAGATTTGAACCTCTCGATTTGCATGATTTGGGGGCGTTCTCTGGATCAAGAGGGTAGCGAGCCATTTTCACAGGTCATC-CGGACCCCTGACCGGAAGAGCC

a score=28981
s chr3           69335192 653 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT---------CCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCA--CCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTG-------------------------------------------------------------------------------------------------------------------------CTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCT---------------------------------------------------------------------------------------------------------------------------AGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAGCCCGTCACCTTTACAAAAAGAAGAAGAAAAGAAAAAAAAGAAAGAACCTAT
s HiC_scaffold_1   441040 893 + 233722169 tttattttatgcttGATTTATTCCTGTGccataagtttttgttttttcagtttcttctgaggtatctttttcttttgtgcaacTTCATCTTCTGGTTTAGGTACAATTTGT-CCTTTTCAGTAAGGATCCCCTCACTGTGGCAGGCAGAGCTCATGTATGGGTAAATCCAGCCATGAGCTCTGTAAATATGGTGACTTGCCATGGGTGTTCTGTTCACCTGGGTATGTTCAATGGCCACAGAATGTACATCTAAACCCTTCAGTTCAGCAGTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTC----TTTTTGGGCCATTGACCCTTGGTCCAGCACCACTGTTTGGCCTGGGCACATCCCTACTAACTCCAGCATTGTAATGCTGGAATGGCACACAGTgcttctctcattctctctctctctctcttttggtggTATGGgggatgaactcacaacctcatgcttgcaggacagaggcaggcacttatgccactgagctaaatccctagcactgcacatttcttctttaatgtgaCATCCTTCAGATACATGACGGCCTTTTAGATGTGTGCACCCTCAATGGCTTGGGCGGTTTCATGggtgttcttttttaaatcttttttttttttttttttgtaccaaggattgaggATCTAATTCACGACctagctcttgccaggcaggtgcttatgctgctgagctaaatcctcagcctcttcAGGGGTGTTCTTAAAGTGAGCACAGAGATTTGAGCCTCTTGATTTGCATGA----------TTTTCTGGGTCAACAGAGCAGCAAACCATTTTCACAGGTCATTTCAAGCCACTTACAGGAAGAGCCACTTTATTTTACATAGGAATTTATAAAAGACAACAGCACAAAAAACCAT

a score=37882
s chr3            69335192 600 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATT-ATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAG
s HiC_scaffold_1 209881308 596 + 233722169 tttattttatgcttaatTTATTCCCATGctataatgttttgtttctttagtttcttctggGATATCTTTTTATTCTGTGCTACTTCCTCCTCTGGTTTAAGAACAATTGATTCCTTTTCAGTAAGGATCATCTCAGTGTGGCAGGGGGAGCTCATGTATGGGTTATTCTGGCCATGAGCTCTGTAAATACAGCAGTACATCTTGGGTGCTTTGTTCACCTGGATATGTTCAATGACCAGAGAATCTACATCTAAACCTTGAAGTTCAGCATTACTCTTTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTC----TTTTTGGGCCACCAACCCTGTGTCCAGCCCCACTGTTTAGCCTGGGCACACCTACCATCTCCACCATTGGCAACGCCAGAATGGCACACAGTGCTTCTTTAATGGGACTTCCTTCAGGTACTTGGTGGCCTTTCAGATATGCATACCCTTGATGGCCTGGGTA-----TTAAACA---TGAAGATGAACATGAAGATTTGAGCCTCTTGATTTGCATGATGTTGGGGGATTTTCTGCGGCA--AGAGTAGCAAACCATTCCCATAGGTAACCTCACGCTGCTTACAGTAGG

a score=21165
s chr3           69335193 604 + 160039680 TTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT-------CCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCT-AAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATC-----CTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAG---------------------------------------GTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAGCCC
s HiC_scaffold_1 94528523 619 + 233722169 ttattttatgctgaatttattccc-----ataaatttttatttcttcagtttcttctgaGACATCTTTCTTATGTACAACTATCTCTTC-AATTTAGGAACAGTTTGCCCCTTTTAATTAAGGGTCATGCCGGTGTTTGAAGGG---TTCATGCATGCAATAATCAGGCTACAGG----GCAAGGTCAGCAGTGCAT-TCAGGTGCTTTGTTCACCTGGATGTGCTCAATGAATGCAGAATCTCCATCTAAAATTCTAAAGTTCAGCATTATGCTCTGCATCTTTAGGTACATGTTGC-AAAGTCCAGCAC----TGTTTTGGGGCCATTGACTCTGTGTCCAGGTCAACTGTTTGGCCTGGGCACACTTCCCTCTTCCACTGTTCTA-ATGCTGAATGCCATACGTTACTTCTTTaaagtgatattttatatttcagataCTT-GCAACTTTGCCAATATG----CTCTTTTTGGCCTAGGGAGTTTCCCTTCCCCTccaccttctctcctttcccttccccactCCTCTCATTCTCTTAAAGTGATCATAAAAGTTTGAATCTCATGATTTGTATAATTCTGTGAAGTTCT--------AGAGAATAGCA----TTTTCCACAGGCCACTTTCAGCAGGTGACAGGAAGAGCCC

a score=16774
s chr3            69335195 567 + 160039680 ATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTA-GGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTT
s HiC_scaffold_1 188077726 510 + 233722169 ATTTTATGCAGAATTTATTTATGTCTCAT------TGATTTCTTCA--TCCTTCTGGAACATCCTTTTT-------------GCTTTGGgacaatctgtttcttttccacaAGGATCCTCTCTATGCAGT-----GAGCAAAGATGTGGGTTAACCTG--CCTGAGTTCAGCATGCA---CTGTGGCCCTTATGGGGCTTTGTGCATCCGTGTGTGCCCAGTGACCAGAGAGTCT-CAGCTGCATCCTCAAGCTCAGCACTACTCT--GCATTTTCAAGAGCTTGCAGGAGAAAC-CATCCCTCTTTTT-----GGCTACCAACACCGAGTTCAGTGCAACTGTGTGGGTTTGGCACAGGCAAC--CTCTGCTACCCTGGCACTGGAGGGGCATACATTTC--------------ATCTTTCTGATACTTGATGGCCTTTTGGGTATGCTTATTCTTGGTGGCCTGGGCAGTGTTACA-GTGTTCTTAATATGAACATGGAGATCTGAACCT-TTGAATAGCATGGATTGGTGGGATTTCTTGGGTTAAGAGAGTAGTGAATCATTTT

a score=17416
s chr3            69335195 567 + 160039680 ATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTA-GGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTT
s HiC_scaffold_1 187974829 510 + 233722169 ATTTTATGCaggatttatttctgtctcattGATTTTT------TCA--TCCTTCTGGAACATCCTTTTT-------------GCTTTGGgacgatctgtttcttttccacaAGGATCCTCTCTATGCAGT-----GAGCAAAGATGTGGGTTAACCTG--CCTGAGTTCAGCATGCA---CTGTGGCCCTTATGGGGCTTTGTGCATCCGTGTGTGCCCAGTGACCAGAGAGTCT-CAGCTGCATCCTCAAGCTCAGCACTACTCT--GCATTTTCAAGAGTTTGCAGGAGAAAC-CATCCCTCTTTTT-----GGCTACCAACACCGAGTCCAGTGCAACTGTTTGGGTCTGGCACAGGCAAC--CTCTGCTACCCTGGCACTGGAGGGGCATACATTTC--------------ATCTTTCTGATACTTGATGGCCTTTTGGGTATGCTTATTCTTGGTGGCCTGGGCAGTGTTACA-GTGTTCTTAATATGAACATGGAGATCTGAACCT-TTGAATAGCATGGGTTTGTGGGATTTCTTGGGTTAAGAGAGTAGTGAATCATTTT

a score=20430
s chr3            69335196 598 + 160039680 TTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCT---------CCTCTTCTGGCTTTGGAAAGA-TCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTA-GGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAG
s HiC_scaffold_1 187826452 574 + 233722169 TTTTATGCAgaattaatttctgttttataggTTTTT-----TTCA-CCCCTTCTGGAACATCTTTTCCTTCTGTGTAGCCATCTCTTTTGGCTTGGGAAAAAATCTGTGCCTTTTCCACAAAGATCCTCTCTTTGCAGT-----GTGCACATGTGTGGGTTAACCCAAGCCTGAGCTCAGCACGTG---CTGTGGCCCTTATGGGGCTTTGTGAATCTTG-TGTGCGCAGTGACTGGAGAGTCTCAGT-TGTACCCACAAGCCCAACACTACTCT--GCATTTTCAAGCTTGTGCAGCAGAAACCCAGTCCTCTTTTT-----GGCTACCAACACTGAGTCCAGTGCCTCTGTTTGGCCTGGGGACA--GGCCACCTCTGCTACAGTGACACTGGAGTTGCATATATTGCTTCATTAGGGTGAGATCTTTCTGATACTTTTTGGCT--------ATGCTTACTCTTGGTGGCCTTGGCAGTGTCACAG-TGTTCTTAACATGAACATGCACATTTGAACCTCTTGAATGGCATGGATTTGTGGGATTTCTTGGGTTAAGAGAGTAGTGAACAATTTTT-TGGTTCACCTCAGGCCAATTGTAAGAATAG

a score=20551
s chr3            69335197 598 + 160039680 TTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTCCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCA-GCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGAGC
s HiC_scaffold_1 183761936 552 + 233722169 TTTATACTGAATTTATTTCC-----ATGTATTATTATTCCTACAGTC-CTTTTGTGCAA---------CTTcctctttttgtttaaaaatagctCATTCTATTTTGGTGAGGATCATCACCATGTAACAAGGGT-GCTTGTATAAGGGCTAATCTGACCATGAGT--------------GGCACATCAAGGGTAACTTGTTCACCTGGAAATATTCACCGAGCAGATAATCTATGTTTAAAC--------TCAGAATTACTGT--GCATTTTAAACTATATGTAACCAAAATTCTTGCAAT----TTTTTATGGTCATCAGTCCTGTGACCTGAGC-ATTGTTTGACCCAGGCACACCAACTGACTCCATCATTGCAACACCC-AGTGGCAgccattgtttctttaaaatgacaTCTTTCAGCTACTTGGTGGTTTTTCAGATATGCACATCTTTGATGCTCTGGGCCGTGTCATAATTATTTTATAC-TCATCAAGAGAATTTGGACCTCTTGATTTCCATGATGTTGTGGGGGTTTGTGCATTAAGTAAGTAGTGAGGCATTTTGACAGATCAGTTCAGGTTGCTTACAGGAGGAGC

a score=12484
s chr3           69335200 386 + 160039680 ATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT---------CCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTG----TTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTC-CACCATTATACCTCCGGAATGGC
s HiC_scaffold_1 99138140 362 + 233722169 atgctaAACTTAgtct---------aatgttt--ttattcattttcttctgtgataCTTTTTTCTGCTGTGCAACTTCCTCTTCTGGTTTTGGAACAGTGTGTTCCGTTTCAGTAAGTATCATCTCAGTGTGGCA--GGGAGCTCATTTATGGCTTCATCTGACTCTGAGTATAGT----------GAGCATCTTGGAGGTTTTGTTCATTCACCTGGATATATTCAGGGACTACAGAATTGACATCTAAACTC--AAATTCAGTGTTA--CTCTGCATTTTTAAGTAT---CAGAGAAA--TCAGCACTC----TTTTTGGGTCACTGACCTTGTGTCTAACAT--CTGTTTGGCATAGATAGATCTCTCCCCACTCAGCATTTTAACACTGGAGTGAC

a score=12115
s chr3            69335523 240 + 160039680 GTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGATTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGAACCATCTTC
s HiC_scaffold_1 186871276 238 + 233722169 GCCCAGCCCCATTCTTTGGCCTGG-TGCCACTCCCAAGCCCACTATtgaaacacccaagtggcacatATGGCTTCTTCTAGGTAACATCTTCCCAATACTTGGTGGCTTTTTAGATATGCATCCCCTTGATGGACTTGGCAGTTT-CTGGGCATTCCCAAAGTGACTGCAAAGATTTGAACCTCTTGATTTGTGTAATTTTGTCATGTTTGGGAGGTCAAGAGAATAATGAAACATTTTc

a score=8510
s chr3            69454452 418 + 160039680 AAGTAGGATTTGCTAGTGAATGTGTCCCCAGGAAGGGAA--GCACAGGAGAAGCCATTATGACCACAAAACC--CAC-----CAGGGGGCGACAGTTGGGGCTGTGTTGCCTCTACTGCCTTCTGTGATGGACTCTCCCCAGCTACCAGGGCTTCAAG-----TTCATGGTAAACTTGATACAGC---ACTACTTTGAGATATGGATCATCTGTCAGCCAGGCTCTTGAACTTGTGCCCATGTAGGTCCTCAGTCTTGTGATCTTTGTTCTGCGGCTTGTGTG-GTGGACCCAATGGCTTGGCCAGTGTGCGC---TACCACAATGTGCGTTGGGCCTTCCCAAAGGCACTAGCCACACATACCTATCCGGACACTA-ACTTAAACAGCGAGAGATCACAGACATGAACATCTGTTGGAAAGGACCATCTACCAGGGTCC
s HiC_scaffold_1 179450567 407 + 233722169 agataagaTTTCTTGATGAACTTGATCTGAAGGAGGAAACGGCAGAGTTGGAGCCTTCGAGAGTGTAAGGCCGCCACTTGTCCAGGGGACCACCATCAGGG------------------------TGA--GGCGCTCCTCAGCCACCTTGCTTTCAAAATTCATCTGTGTTAAACTTGGCGAAGCTCCACTTCTTTGAGAGGTGGATCTTCTGGTGGCCAGGAAACCTAACTTAGCCCTGTATAGGGCCTCGGTCACTTGTTCCTTATTTTGCAGTCTGTGTGAATGGACATGATGACTTGTCTGATGTGCACGCTTACCAC--TACACCCTGGGGCTTCCTGAAGGTA----CCCTGCACACCTGTCTGGAGCTTAGACTGGGCCAGTATAAGATCAGAGGTGTGAACATCC-CCAGGAATCAGTGTCTCCCAGGTTCC

a score=41519
s chr3           69566211 1307 + 160039680 aaaaagccaaagtaatcaggacagcatgg-GTACTTTATTGATGGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATGGGGGTCTGGGATGGAA----ACTGTGAGGGAGAGACTCAG--TGTTA-GGGACCGAGTTGGGACAGGGACTCATCAGCAACCAAGGGCCTCCCTCTTCCTCTCAGTGTCCTTGCTGAGGTGAGTAGTCCAGGGTTTCTTTCTCCTTAGaggccatgtaggccatgtaggccatgAGATCCACCACCCTATTGCTGTAGCCGTATTCACTGGTATACCAGGTGGTA-----TACAAAGTTGTCATTGAGAACAATGCCAGCCCCAGCATCAAAGGTGAAAGAGTGGCAGTTGCTGTTGAAGTTGCA--GGAGACAACCTGGTCCTCAGTGTAGCCCAGGATGCCCTTTAGTGCCCCCCCCATGCCTGCTTCACCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCTGCATGTCAGATCCACAATGGATATATTTGGGGGTAGGAACACAGAAGGCCATGCCAGTGAGCTTCCTGTTCAGTTCTGGGATGACCTTGCCCACAGCCTTGACAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCATGACTATCACGCCACAGCTTTCCAGAGGGGCCATCCACAGTCTTCTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGGGCTAAGCAGTGGGTGTTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGCGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGCCTTCTCCATGGTGGTGAAGACGCCAGTAGACTCCACCACATACTCAGCACCGGCCTCACCCCATTTGATGTTGGCGGGATCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCGGCCTTGACTGAGCCATTGAACTTGCCATGGGTGGGGTCATACTGAAACATGAAGACCATGTTCTAGGGGTTACACCATGTAGTTGGGGGTTAATGAAGGGGTCACTGATG------ATGTCTACTTTGACAAGTGCAGAGCAGAAGGCAGCCCTGGTAACCAGGCACCCAATACGGCTGAATCCATTCACACTGACCTTCACCAATTTGTCTACAAGCCAAGGCTGGCACTGCACAAGAAGATGCAGCTGTCTCTGGGACAGGGAGGA
s HiC_scaffold_1 97936667 1227 + 233722169 aaaaatacaAACT--TTTGGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCATCTTTCCC---------CTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctcttttcat-----ttcttgctcAGGCTGGTGGCCTA----------CTCCTTGGGGGCAATGTGGACCATA---------AGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCC-AGGTTGTCATTTAGGGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAG-CCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGAT---CTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAG-TTCACCCATTTTGATGCTGAT-AAATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACA-------------------TTCACAGTATAACT-GAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGC------CTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=13804
s chr3           69566423 1014 + 160039680 GGTTTCTTTCTCCTTAGaggccatgtaggccatgtaggccatgAGATCCACCACCCTA-TTGCTGTAGCCGTATTCACTGGTATACCAGGTGGTATAC----------AAAGTTGTCATTGAGAACAATGCCAGCCCCAGCATCAAAGGTGAAAGAGTGGCAGTTGCTGTTGAAGTTGCAGGAGACAACCTGGTCCTCAGTGTAGCCCAGGATGCCCTTTAGTGCCCCCCCCATGCCTGCTTCA-CCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCTGCATGTCAGATCCACAATGGATATA--------------------TTTGGGGGTAGGAACACAGAAGGCCATGCCAGTGAGCTTCCTGTTCAGTTCTGGGATGACCTTGCCCACAGCCTTGACAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCC--CCATGACTATCACGCCACAGCTTTCC---AGAGGGGCCATCCACAGT--CTTCTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCA-TGGATGACCTTGGCCAGGGGGGCTAAGCAGTGGGTGTTGCAGGATGCATTGCTGACAA----------------------------------------------------------------------------------------------------------------------------------------TCTTGAGTG-----------------------------------------------AGTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGCGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGCCTTCTCCATGGTGGTGAAGACGCCAGTAGACTCCACCACATACTCAGCACCGGCCTCACCCCATTTGATGTTGGCGGGATCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCGGCCTTGACTGAGCCATTGAACTTGCCATGGGTGGGGTCATACTGAAACATGAAGACCATGTTCTAGGGGTTACACCATGTAGTTGGGGGTTAATGAAGGGGTCACTGA------TGATGTCTACTTTGACAAGTGCAGAGCAGAAGGCAGCCCTGGTAACCAGGCACCCAATACGGCTGAATCCATT
s HiC_scaffold_1  3814692 1153 + 233722169 GGACTCTGACTCCTTAGAGATCTTGTGAATCATAAAGTACCT-----CCACCCCCACAGTTGCTATGGCCAGATTCATGGTCATACCAGGAAATAACCTAACCGGAGTACAGTATTCACTCAGAGGAATACCCACCCCAG-----------AAAAGCAGACAGTAGATGTCACCA----AGGCAACCAGCTATTCCTGTAAACAGCTCAAGGTGCCTTCCAGGGCTCCATG-ACATTTGCTTCATCCCCCTTCTTGAT---ATTATATTTGACACCTTTGTCCCAGAGGCAGATTAAATCTATGTTTCATCAAACCCTCCACAAGCTCGCCACCCCGGGAATGGGCAGCTGGAAGGCCAATTCAATGAGCGTCCTGCTCAGCTC-AGAATAGCCTTGCACACGGCCATGGCGGGGTCAG-GGCTCCAGGGACAG------GGACTGCTAACGTTAACTG---------AGCTTGCTGGAAGAGGGGGCATTCAGAATAATTTCTGGGAGACAGTGATGGCATAGACCACAGCCTTAAATTCCTCCA-ATTACAGAAGTTATTAACAGTTGACACTGGCCAGGTGTCC--ACCCCTTGGTAT-gcaggtggcattgctgatatatgtatatatttttaatttgcaataCTGGGCCTTTCTGCATTCCCATCCCCTGCTTATATGTTTGAAAAAGTGTCTCTCTTAGTTGCTAAGTAGATACATCCTGGGCTTAAATTTCCAGTTCTCCTGTCTCatccttcctgagtgctaggattatggatgtgtgccaccatacccagccccAACAATCTCGAAGCAATCATCGTTCTCATAGTTCTCTCCTGTTCCAAGTATGTGG-CATCGACACAAGTGGTAGGGATGATAATACTTT-GGCTTCACCTCCGAAGCGGGTGCTGCCTATGGCTAAGATGATGAGGAGCACAGCGGATTGCAGCATGTGTTCAACATCG-CATCACT--ATCTGATGCTGGAGGGATCTTGCTCCTGAAAAGTGGAATTGGGATTCTTACAGACTGTA--CTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCA---------------------CAGTATGaagtcaaggaaagagacattgaCTGCTGCAACATCCCCTTC---------------AAAAGCAGCCTATGGAACTGG--AGCCAATACAGACAAATTCATT

a score=27793
s chr3           69566557 959 + 160039680 AAGGTGAAAGAGTGGCAGTTGCTGTTGAAGTTGCAGGAGACAACCTGGTCCTCAGTGTAG--------CCCAGGATGCCCTTTAGTGCCCCCCCCATGCCTGCTTCACCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGG--------CTGCATGTCAGATCCACAATGGATATATTTGGGGGTAGGAACACAGAAGGCCA-TGCCAGTGAGCTTCCTGTTCAGTTCTGGGATGACCTTGCCCACAGCCTTGACAGCAC----CAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCATGACTATCACGCCACAGCTTTC-CAGAGGGGCCATCCACAGTCTTCTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGGGCTAAGCAGTGGGTGTTGCAGGATGCATTGCTGACAATCTTGAGTGAGTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGCGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGCCTTCTCCATGGTGGTGAAGACGCCAGTAGACTCCACCACATACTCAGCACCGGCCTCACCCCATTTGATGTTGGCGGGATCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCGGCCTTGACTGAGCCATTGAACTTGCCATGGGTGGGGTCATACTGAAACATGAAGACCATGTTCTAGGGGTTACACCATGTAGTTGGGGGTTAATGAAGGGGTCACTGATG------ATGTCTACTTTGACAAGTGCAGAGCAGAAGGCAGCCCTGGTAACCAGGCACCCAATACGGCTGAATCCATTCACACTGACCTTCACCAATTTGTCTACAA----GCCAAGGC-TGGCACTGCACAAGAAGATGCAGCTGTCTCTGGGACAGGGAG
s HiC_scaffold_1  9527482 906 + 233722169 aaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAGGATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATT-GGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTC-TTGTAGGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGGC---------------------TCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTG-------------------TGTAGCATGTAGTT-GAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC------TGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCT-CAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=9236
s chr3            69663340 413 + 160039680 AAAATTTTATG--ATAAATGTGTTTTACCAATGAAAAGTAAGTGGGCAATATTACAAAGAGACTCA--------TGCTTCCTTTTCTGACCATGGAAAAGGAAGTAAGAGTTGATTATACCCACGAAG-TCTATAGAACCTGATTTCTCTCTCATATGTGGCCTTTTGTTTCTGTCCTTTCCATTCATAATATTTG---------AAAAAGACAATTTTGTTAGAATGAAACTTGAAATGATGCTTTGTTGTTATCTGATTTCTTCTATAGTTTAACTTTCCACTTACTTTTCTAAACTAAACTCTGATGGAACACCAAAATAACAG--------------AACAAATAAAGGTT--------------------------TTGTCCCTAATAACTTAAACTA---TACTAATACAAGATTGTAACTATAAAATAAAACTTGTCAAAGAAAAA--------AAGTAAAAGATAAGAAATTATTT
s HiC_scaffold_1 224721242 475 + 233722169 AAAATCCTAAGCCATACTTAGACTTTGCCaatgaaaaataag----caatattGGAAAATGACCCTATTAGAGTTCCATCTCCCTCTGATTTTAAACTGAGAAATAAGACTTGGTTATCCCCACAAAAATCTGTGGAATTCCAATT-TCTTACAAGTCTGACCTTTTGTCTGTACAGCTATTGCTAATAACATTTGGTACGTGGGAAAGGAATGACTTTGGTGGGAAGGAATTCAAAATGATA--TTGCTATTATCTGACTTCTTCTGCAGTGTGATTATGTGTTTCCATCCCCAAGCTGGAATCCGGTGTGATACCAAAATAACAGGACAGATTATTAACAACAGATAAAGTTTACAATGGTTTGGGTATCAAAGAACAGTCgctcttaa-aattaaaactagtGGCTTCACAGGAGATT-TAGCCATAAAGTCAAAttggccaaaagaaaagaaaatagaaggaaaacataataaaatattt

a score=9312
s chr3           69689847 354 + 160039680 TTTTGTTTGTTTTCCCCACATGAACACACATCTAAAGTGTGTTTGTTTAAGGACATTTTCGGAAAGTTTTTGAGAGGGACAGCATCACACAGAGCCTGTGTCCAGTGCCATTGGCTAGAAGATTGTTGTGGAATTTGGCACAGACTATGTCACTGTTTCCATGAGCCCAAAAGACTTCCCTCCTGATTCCTC-TGGCTTGTCCAGTCTTCTACCAGGA-----GCCAAGGTTTTTGCTTTGTGTACACAAACAC---------------------------------------------CTTCCATTTGAAGAAGTGCAGTAGG--CTCTCTGCTTCTGAACACCCTGTTTGTAGCCAGTAAACATGGCCTTGCATTACACAGCCTGTCACACATACTTGCTCTTTA
s HiC_scaffold_1 13745006 394 + 233722169 ttttttttttttttttaaca-gagcaCA-----AAACCACTTTTATTTTCCGTTAGTT-----AAATCCTTGAAGGGTACAGCATCACATGGATTCGGTGTCCAATGGCCTTAGCAGGAAGGTTTTTTTGGAACTTGGCACAAACCATGCCGCTGTCTCTATGGGCCAGAGTTACCTTCCCCCACATcactcttgttttgtttggtttgccaCTGGCATCACTGTGCTGTTTTTCGCTTTGTAGACATAAGCACATCTCTTGCCCAAGTAGAATTCAGTTTCATCTCAGGCATAAGCATCTTCAATTTTAAGAACAGCTGTGTGTTCCCTCTGGTTCCAGAGACCCCACTTACAGCCAGCATAAATGGCCTTGTGC--CACAGTCTTCCAGACATATTTGCCTTTTA

a score=3958
s chr3            69699437 100 + 160039680 CAGTCATGCACACACATAATGATGTTTCAGTCAGCAGTAGACTGTGTGTCTAACAGTGATCTCACAATATTTAGTTACCTAATAATGCAGTAGCGGTCTT
s HiC_scaffold_1 143894723  99 + 233722169 CAATCATGTGC-CATCTAATGATGTTTCAGTCAACAACAGCTTGTGTGCATGACAGTGTTCCCAGGAGGTCTTTCAGCCTAGTGACATTGTAGCTGTCTT

a score=16712
s chr3           69716914 510 + 160039680 cAGAGTCTTTATTCTTTTTTTTTTTCAGTTTTTGTGATTTTATTTAAACACAAA---ACATGTACACAAGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACTCTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAACTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGATGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCGCACCCTGTTGTCGATGCCTCTGGGTTTCCTCCAGTTCCACTTAATTTTCACATATCGGTCTGACTGGTGTCTGATGAACTTTTTGGTCCTCTTTTTGACGATCTTGGGCTTCACCAGAGGCCGGAGGGCAGCCATGATGCTGCATAACAGAAGGTAGCCACCTCGT
s HiC_scaffold_1 38629955 473 + 233722169 cagggccttttttttttttttttggcagtctTTGTGATTGTATTGAAGCGCAAATAAACATGCACAGGAGCGGTCTATGAGTTTGCTCCGCGGTGCAGCCTGGCGTTAGGGTCCTGGTCTC-GGTGGCT--TTGGGCCGCTCTTCCCACGGTGGCATTGCGGTTCCTGGAGGAGACGTGGCCCGCAGTCTCCACGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCTGTGCACCGGGGACTC-CGGAAGCCCCT-----GCGGCCGCGCTGTCTCTCTGCTGCTTC------CTGCGCTGGGCATCAAGTTGCGGGCCTGGAACCTTCTCCGCGCTCTGCTGTCCACGCCCCTGTTTTTCCACCCATCGTGCTGAATTTTGACACAAAGGTCTGATCGGTGCCTGAT------------------------GATCTCGGGGTTCACAAGAGAGCGAAGGGCCA-CGTGGTGCCCAGTCAGATCCGGCTGCCACCGCAT

a score=16185
s chr3           69716919 468 + 160039680 TCTTTATTCTTTTTTTTTTTCAGTTTTTGTGATTTTATTTAAACACAAA---ACATGTACACAAGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACTCTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAACTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGATGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCGCACCCTGTTGTCGATGCCTCTGGGTTTCCTCCAGTTCCACTTAATTTTCACATATCGGTCTGACTGGTGTCTGATGAACTTTTTGGTCCTCTTTTTGACGATCTTGGGCTTCACCAGAGGCCGGAGGGC
s HiC_scaffold_1 37566887 432 + 233722169 ttttttttttttttttttggcagtctTTGTGATTTTATTGAAGCGCGAATAAACACACACAGGAGTGGTCTGCGCGTTTGCTCTGCGGTGCAGCCTGGTGTTAGGGTCGGGGCCTC-GGTGGCT--CCTGGCTTCTCTTCCCACGATGGCATTGCGGTTCCTGGAGGAGACGTGGCCCGCAGTCTCCACGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCCGTGCACCGGGGACTC-CGGAAGCCCCT-----GCGGCTGCGCTGTGTCTCTGCTGCTTC------CTGCGCTGGGCATCAAGGTCCGGGCCTGGAACCTTCTCCGCGCTCTGCTGTCCACGCCCCTGGGTTTCCGCCCGTTGCGCTTAATTTTGACACCAAGATCTGATCGGTGCA----GAATT--------------------ATCTCGGGGTTCATAAGAGGTCGATGGAC

a score=27731
s chr3            69716925 475 + 160039680 TTCTTTTTTTTTTTCAGTTTTTGTGATTTTATTTAAACACAAA---ACATGTACACAAGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACTCTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAA----CTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGATGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCGCACCCTGTTGTCGATGCCTCTGGGTTTCCTCCAGTTCCACTTAATTTTCACATATCGGTCTGACTGGTGTCTGATGAACTTTTTGGTCCTCTTTTTGACGATCTTGGGCTTCACCAGAGGCCGGAGGGCAGCCATGATGCTG
s HiC_scaffold_1 123139383 480 + 233722169 tttttttttctttgtagtttttgtggttttatttaaacataaataaacatgCACAAGAGATATCTACTTGTTTTGTTTGCTGCGTAGCTTGGGATTGGGTTTGGTGACTTGGGTGGCTACCTGATCTGCTCTTTCCATGATGGTCTTGTGGTTCTTGGAGGAGTCGTGGTGAGCAATCTCTGCACAGTAAGATTTTTTGCACATCAGCAGCAACTCCAGCACCTTAACATGGTGCACCAGGAACTTCCTTCCAGAAGCTGAT-GGCAGCAtgtgctttgtctttttattgcttCCATACCCTATGTTGGGCATTAAGATCTGGCCCCTTAAGCTTTCTCAC-CCCTGTTGTCGATGTCTCTGGGTTTCTGCCAGTTGTACTTAGTTTTGACATATCGTTCTGACTGGTGCCAGATGAACTTCTTTGTCCTCTTTTTGATGATGTTGGGCTTCACAAGGGGTCTGAGGACTGCCATGGTGCTG

a score=16565
s chr3           69716929 490 + 160039680 TTTTTTTTTTCAGTTTTTGTGATTTTATTTAAACACAAA---ACATGTACACAAGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACTCTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAACTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGATGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCGCACCCTGTTGTCGATGCCTCTGGGTTTCCTCCAGTTCCACTTAATTTTCACATATCGGTCTGACTGGTGTCTGATGAACTTTTTGGTCCTCTTTTTGACGATCTTGGGCTTCACCAGAGGCCGGAGGGCAGCCATGATGCTGCATAACAGAAGGTAGCCAC
s HiC_scaffold_1 35748115 453 + 233722169 TCTTTTTTGGCAGTCTTTGTGATTTTATTGAAGCGCAAATAAACACGCACAGGAGCAGTCTACACGTTTGCTCCACGGTGCAGCCTGGCGTTAGGGTCGG-GGCCTTGATGGCCGTCCAGGCCGCTCTTCCCATGGTGGCATTGCGGTTCCTGGAGGAC--GTGGCCCACAATCTCCGCGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCCATGCACGGGGGACTC-CGGAAGCCCCT-----GCGGCCGCGCTGTCTCTCTGCTGCTTC------CTGCGCTGGGCATCAAGGTCCAGGCCTGGAACCTTCTCTGTGCTCTGCTGTCCACGCCCCTGGGTCTCCGCCCGTTGCTCTTAATTTTGACACAAAGGTCTGATGGGTG------------------------CTGGATGATCTTGGGGTTCACAAGGGGTCTGAGGGCCA-CGTGGTGCCTAGTCAGAGACAGTTGCCAC

a score=11197
s chr3            69716940 281 + 160039680 AGTTTTTGTGA--TTTTATTTAAACACAAAACATGTACACA--AGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACT-CTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAACTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGA
s HiC_scaffold_1 110768225 286 + 233722169 AGTTTTggcaagtttttctttaaatataaaaaatattcacaTGAATAAtctactcattttcttttttcaccatTCTGGCGTGGAGACTGTTGGCCATTCATGGTCATCTTAGCTACATTTTCAACAATGTGTTGGCAATTCTTGGAGAAAGCACTGTGAGTGATATGAAGACAGTGAGGTTTATGGCACTTTAATAGCAATTCCAGCTTCTTGATGTTGTGGACCAAGAATTTCCAGAAACCACTGAGCAGcgtatattttgttttattgttgcttCCACAACTAA

a score=15402
s chr3            69716944 495 + 160039680 TTTGTGATTTTATTTAAACACAAAACATGTACACAAGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACT-CTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAACTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGATGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCGCACCCTGTTGTCGATGCCTCTGGGTTTCCTCCAGTTCCACTTAATTTTCACATATCGGTCTGACTGGTGTCTGATGAACTTTTTGGTCCTCTTTTTGACGATCTTGGGC-TTCACCAGAGGC--CGGAGGGCAGCCATGATGCTGCATAACAGAAGGTAGCCACCT-CGTAGGCAGTGCCGAGGA
s HiC_scaffold_1 176697405 457 + 233722169 TTTATCCTCTTATTTAAACACAAAACATACACATGAATTATCTATTAGTTTTCTTCACTATGCAACCTGGC-TTGGGACTGGTGGTGACAAGTGGCTGATCAGACTGCTCTCTCTGAAATGGATTTGCAGTTATTAGAGAAAAC---ATGAGC-ATTTCAGCACAGTAAGAT---------------------TCTTGCTCCTCTACACTATGAACGAGGAACTTCTAGAAGTCACTGGGCAGCAtgagttttgttttctcctccctCCCAAAACCAACATTGGGTGTCCAGATCCAGCCTGTCAATATTCTCCACACTTTGCAGTCAATAC-----------------TTCTCCTTAATTTCGCCATACTGGTCTCACTGGTGCCAGATGAACTTCCTGATCTTTCTAAAAATCAGCTCAGATGCTCACACAAAGCATCTGAGGGCAGCCATGACAAAGAGCAGGAGATGGCTGGCACCTCCATATGGTGCACCAAGGa

a score=4912
s chr3            69776206 216 + 160039680 TTAACAGTTTTGGGAAGAGCCA------GCTACACT-------------CCCGT---TAGCTTAGCAT------CTCTTCCTGCTACCACTGGTGTA---GAATCCACCTGTCTTGCTGTTG----AGACATACT-TCTGTGAAGGCTAGTAATGAAATTGCACTGGGTTCCGTTTCAGGTCTGTCTGTCTCTTTCTTTGGCCTTTTGACACCTTGTGCCGTTGCCATCCAGTTCTTATACAGAAGGGTTTT
s HiC_scaffold_1 165860560 248 + 233722169 TTAATGGTTTTTGAGAAAGCCAAAGTATGTTACAGTTGGCTGAGGCCTACCTGTGTCTAGTTTAGCATAGAAACCCCTTCCTCCCGCC-TTGGAGTACAGGGATCCTTGTGTCCTGCTTCTGCCTAAGACATGCTGTCCAT--AGGTCCCTAAC-AAATTTCATTTTGTGCAGTCCTGGGTTTGTCAGCTTCTTTCTTCGGTCTCTTGGCACCTTCTACCTTTGGCAGCTGGTTCTCACATACTGAGTTTTT

a score=4377
s chr3           69776269 155 + 160039680 GGTGTAGAA-TCCACCTGTCTTGCTGT----TGAGACATACTTCTGTGAAGGCTAGTAATGAAATTGCACTGGGTTCCGTTTCAGGTCTGTCTGTCTCTTTCTTTGGCCTTTTGACACCTTGTGCCGTTGCCATCCAGTTCTTATACAGAAGGGTTTTTT
s HiC_scaffold_1 38508662 160 + 233722169 GGTATAGAAATGCTCCTATCTTGCAGCCATCTGAGACATGCTCTGTTGCTGGGTCTCTAAGAAATTGTGCTTTGTGCAGTCCCAGATTTGCTCGCCCCTTTTTTAGGTCTCTTGGCATCTCCTACCCTTGCTGACCTGTTTTCTTAGAACAAGTTTTTCT

a score=34057
s chr3           69804602 1169 + 160039680 actgGCCCCAGTCACCA--------------CCATCACAACAAATCATGAGCAGTGAGGTTGGGACCCATTAGTTGCTGTCTGTCCTCAGTACCTACGC-CACCAAATCTGGCTCCAAGGGCAGCAGTGAGGCCACTGGCAACCCCTGAGGCCTCACCAATTCAGTGCTCCACCATTACCTCACTGAGGGGGCAAAAAGGTCATCATGAGGACTGACTGGGGAACAGTGAAATGGTTCAAAGTAAGGAACAGAAGGGAGCCGGTTTCATCAACAG-AATGACACCAAGGAAGAGGTATTTGTACACCAGGCTGCCATAAAGAAGAATAGTACCAGAAAGTACCATCGTAGAGTAGGGGATAGAGAGACAGAGGAGTCTGATAATG---AAGGAGAAAAGGGTGCTAAGACAGCAGACATTACAGGCTCTG-TGGAGTTCCAGT-AAAGCCAGTATATGTGCAATAGACCATAACCATTATAGATGCTATTCATATCTGTAGAGGGTGGTTCAGGggaagatttagaagtgcccagcactgagttaacaaaggcattttaagaataactggagtgtgtgtgtgtgtgtgtttcctattcaaggatctgagatcctgagtaggtgagcacatgcgactcgcagggaacttaaagtggtgtagacaaaacaacatgcACACATGTTGTTACAGTCCTCCATACAATTACAAACAAAATGGCCAGAATAGTGAGAGTGGGGAAAAGAATAGGGTATCAGAGAGGGCTCCTGAAGGCCAGTCCCTACTACAGG-----AAGCAAGC------------CTTACTACATGCAGAGAGTCTAGGGGCGTTAACTACACTGTTCCAACCCTTCTTTTCAAGGA----------AGATGCTGACAACCAGGGTGCAGGAGAGCAAGGCAGATCAGCGAGACAAAATATACATTGGGATTACA---GACGACTCCGTAGGGACTTTCCTT------------CTAGAGAGTACCGCAATGAAGAGGAAAAGAAAAATCAAGAAGAGGAGCCCCAGGGTCAGCATCCTTCTCAGCAT-TATGTCATTGG--------TATCAA----------CAGAGAACCCTAAACCACAAAGATGGCAGAGAGCAAAGCAATTCACCCACTAGGGGAGAATTCATCTGCTTCTGGGGATCAGTAGGGCAAAGGT-AGTAGATGCCAGTTTACCATTTCAACCACCGTCTGATTTGTTCATCCAACAAGaa
s HiC_scaffold_1 67924868 1030 + 233722169 ACCAGCCCCAGTCACCATCCATAAGCTGCAACCATAAGCACCAACCATAAGCAGCGAGGCCGAGACCCAGAAACCGCCACACCTGCACGGCCCCCGCCCTCAGCGCTGCTGACACCAAGCCCTGCGGCCAGG---------------GTGGCCTCA---GATCAGCGCC--------ACCTGCCGGCGGGGACAAAAAGGTCATCACAACGAAGGTTTTGGGAACAGTAAAATGGTTCAGTGTACGGTACGGATG-----TGGTTTCATCAACAGGAATGACACCAAGGA-GATGTATTTGTATACCAgactgccataaagaagaaaaaccccAGGAAGTGCCTTCCCAGTGTAGGAGATGGAGACACTGTGGAGTCTGATGTTGTTGAAGGAGAAAAGGGTGCAGAGGCAGCAAATGTTACAGGCCCCGCTGGAGTTCCAGTTCAAGACAGTAC-TATGCAGCAGACCGGAACCATTACAGATGCTCTCCAC-----------GTGGTACGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCTCCACGCAATTACCAGCAGAATTACCAGATTGTTGAGAGTGGGGCAAAGAATGAGGGATCAAAGAACACTCCCAAAGGCCAGTCCCAGCAATGCGGCCCTACGCAGGCAAAGGTTCCCATCTTACTACATGCGGAGACCCTATGGGCGTGCACCACAGTATTCCAACCCTCCTGTGCAAGGAGAGTGATGGTGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGGAGACAAGTGAGACAAAATATGTATCGAGGCTATACACCACGATTCCGCAGGGGCCCTCCTTGCCAAAGACAACCTAGAGAGGACGGCaatgaagaagacaaggaaaATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAGCGTGGGCACCGTTGAACTTCAATTACCGAGGCAGATGCCCAGAAAACGCTAAACCAC-AAGATGGCAGAGACAAAAGCAGTTGATCCACTAGCTGAGAATTCGTCTGCTCCGGAGGCTGAGCAGGGCGGGGCTGGGTAAATGCCAGCTTAATATCTCTACCATCATCC-AGTTAATCATCCAGCAAGAA

a score=23064
s chr3            70059684 749 + 160039680 AGAGTTAATCTTGTTGAGTTCTTATCCTGTGGCACCTCCTAGGTGGTTAGCCATGTCAAGATGAAGCTGAACATCTCCTTCCTAGTCACCATCTGTCAGAAGCTCTCTGAAATG-AATGATGAACTCAAGCTTTATACTTCCTATGAGAAGCACATGGCTACAGAAGTAGCTGCTAACGTTGTGGGTGGAGAATGGAAGGGT--TCTGTGATCTAGATCAATGCTGGGAAGGATACACAAGGTTT-CCCATGAAGCAAG----TTGTCTCCACCCATGGTGTGATGTGCCTGCTA--TTGAGTAAGGGGCATTCTTGTTATAGACCAATGGGAACAGGAGAAAGGAAGCACAAGTCTGTTCACAGATGCATTGTGGGTGCCAGTCTGAGGGTTCTTAAGTTGTTTATTGTACA---AAATGGAGAGAA-GGGCATTCCTGGACTGACAGATAGTACTGTGTCTCAGTGGGTTGGGTTCCAAAGGAGCTAGCAGAA----------TCAGAAAG------ATGATGTTCACCAGTGTGCTGCCAGCAAGCCCATGAACACAAAAGGTAAGAAGCCCAGGACCAAAACACCCAACATTCATTGTCTTGTCACTCCATGAGTCCTGCAACACAAATGCCAACATGTTGTTCTGAATTTAAAAATGCGCTAAGAAAAACAAGAGGGAGGCTGCAGGAGATGCTAAACTTTGGATCAAGAGAATTGAAGAAGACAAGGGGCACAGGAGGTTCCGGGAACAGTTTGCCA--ACAAACTGGCTGTCCT
s HiC_scaffold_1 183145790 732 + 233722169 aaagttactCTT---------TTATTTCATAGCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAA-ATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATGTGATCCAAATCAGCAGGAGGAATG----ACAAGGTTTACTCACGAAGCGGGGATTCAGTTCTGAACCACGGCCATGTGTGCCTGCTACTCTGAGTAAGGATTATTCCTGTTACAAACTAAGGAGAGCTGCAG--AGACAGCACACATCTGTTGTGGGTTGCACCATGGGTGCCAATCTGGGCAATGTAAGCATTgttatcacacacacaaaaagagaaaacgGACATTCCTGGACT----AATACCACTCTGCCCTGAT-GTTTGGGGCTCAAAAGAGCTAGCAAAAGCTACAAACTTTAGAATGCCTCTAAAGATGTCAACAAATATGTCATCAAAAAGCCATTATACAAGAAAGGCAAGCAACCCAAGACTTAAGCATCC--------------TGTTACTCCATGTATTCTACAACACAAACTCCACTACATTGCTCTGAAGAAACAGTTg-actaaggaaaataaagagaaggtTACATAATATGGTAAACTTTTGGccaagaga--taaagaaagctAAAGG-----------CTGGGAACAAATTGCCAAGACATGCACACTGTCCT

a score=3795
s chr3           70141942 97 + 160039680 GCAAAGTACTTGCCTGCTCTGTGCAAGGCTTGGGGTTTGATCCTTAGCATCAGAAACAACAGGCCAAACCAAGAGAAGA-TGCCTTTTACAAACACTT
s HiC_scaffold_1 82764717 98 + 233722169 GCAAAATGCTTGCCTGGCACATGTGAGGCTTTGTGTTTGATCTTCAGCACTAAATAAAACAAGTCAAATCACTATAACATTGCCTCATATAAAAGTTT

a score=4050
s chr3            70352511 128 + 160039680 TTCTTCCTGT--GAGATTTGAAATAAATAAAGGAGTAACTTGACAAATTTTCAGATGATCCTGACAAATACACAGATACTTTCTGATATCTGACTCAGACTTTTGAATTGACTTGGAAGGGTATTATAAT
s HiC_scaffold_1 162078756 130 + 233722169 TTTTTCCTCTCAGTGATCTGAAGCAGATCAAGCTAGATCAAGGAGAATTTTCAGATGAGCCTGATAAGTACATTGAGGTCTTTAGAAGACTTACTCAGACTTATAAACTAGATTATAAGGATGTAATAGT

a score=8249
s chr3            70566139 364 + 160039680 caaaagtcccccataccctcccacccactcccctacccacccacttccactttttggccctggcattccTTTTAATATAGAATAACAAGCACTTTTTTT--------TAAAAAGTGAATGATGGCTTATTTGCCTTTCTGGGCTTTGATTTTCCTAGGATAGAACTCCAGCTCCTTTCTTTCTAGCACGTAGCCATATGGTCTGCCATGCTGGTCTGCTCTTAAGTCAATACAAGCAAGAAGCTTGCCCTGTTGGAATTGTTCCTCCAGAAGACTGCTAATTGTAATGTTCTTTTTCCTTTCATCATGTTTCTATTTTTTATTTTTTAGAATAATCTGTGACCTTTTTATTATTTAATATTTCTTCCTCATC
s HiC_scaffold_1 216332134 339 + 233722169 CAGTAGTCTTCAATCTTACCAGGCCCATTCCCCT--TTGCctatcttctttttt----------gtttctttca---tagaATAATAAACACTTTTATTATATGTGCTAAGCCAGGAGCAAAGACTTACTTTCTGTTCCAGACCCTGATTTTCCTCACATGGAA-TCCAGCGACTT-CTCCCTAGAACATTGCCCTCTCCTGGGCCTCACTGGTCCCATCTTAATGCAGTTCAGGCAAGAAGCTTGCCTCACTGGAACTACCTCTTCAGAC-AGTGCTGATGGgggcattcattttcttttttacatacttc---ttttgattttttaaattgttct------------ttgtTTAAAATCTCTTGCTTCTC

a score=8665
s chr3           71894806 210 + 160039680 AGCAGCCTTCTTCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGG-AAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTAAAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTCAAAAGGAATGCCCCATATGTGTTACTACGGCTAAACT
s HiC_scaffold_1 18289652 209 + 233722169 AACTGTCATCTTCCAGTAATTTTCCAAAATGACAAACACAAAGAGAAAGGGGACAGAAACCCAATACATTTTGTTTAGGCCTTTTAGACAAAAATGGGGCTGTTCCTTTGGCCACATACATGCGAATCTACA--AAGAGTGATATCGTAGACATCAAGGGATTGGTTCTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACT

a score=9659
s chr3           71894806 209 + 160039680 AGCAGCCTTCTTCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGGAAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTAAAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTCAAA-AGGAATGCCCCATATGTGTTACTACGGCTAAAC
s HiC_scaffold_1 60922503 210 + 233722169 AACCACCATCTTCCAGTAATTTGCCAAAATGATGAAgacaaagggaaagaggaggggacCCTGGTGTATGTTGTTTAGGCCTTTTAGAAAACACAGGGCTGTTCCTTTGACCACAGACATGCGAATCTACAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAAC

a score=7771
s chr3           71894817 199 + 160039680 TCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGGAAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTAAAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTCAAAAGGAATG-CCCCATATGTGTTACTACGGCTAAACT
s HiC_scaffold_1 18806921 197 + 233722169 TCTGGTAACCTGCCAAAATGACACACATGAAGAGGGTAAAGAGAGCTATTGATTG--TGTCTTCTAAGCCTTTTAGGAAATATGAGGTTTTTCCTCTGTTCACATATATGTGAATCTACAAGAAAGGCGATAATTTAGAGATTAAGGGAATAGatactgttcaaaaagaaagtcCCTATAAATATTAATGT-GCAAAACT

a score=6208
s chr3            71956460 239 + 160039680 TCATTTTGCTTCCATGGAGGTCATTTCTATCAAGATGAACTTAAATGTCTCTTTCCCAACCATTAGCTATAaaacaaacaaacaaacaaacaaacTCATTAAAGTA--AATATGAA-GAAAACTTCTTATTTTCTAGGAGAAGTA-ATGGGCATAGAAGTAGCTGTTGATGATTTGGGTGAAGAATAGAAGACTTATA--TGGTTTGAATCAGCAGT-GGAAAGACAACTTTGTTTTTCCCAAGAA
s HiC_scaffold_1 183145807 223 + 233722169 TCATAGCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAA-ATCTCCTTCCCAGCCACCAGCTACCAGA------------------AACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATGTGATCCAAATCAGCAGGAGGAATGACAA----GGTTTACTCACGAA

a score=4331
s chr3           72335332 281 + 160039680 TTCCAGTTTCATATATT---AAAGACTTTATCTTCTGGATACTGATACTCAAAAT--AGACATTGGGGAACAGCTGGGTCA-TGAGGGCTCTGATCTCATCAATGGATTAATCCAATGGTAGATTTATAATTC-ATGAGCTTTAGATGAAGGAACAAAATGTAGCAAATAAGATCTCTTTCAAGGCACTGTGTTCCTGAGGGCACATCATTATGGAATATATCATGCTGTGGCCGCATTCTAACCCTCTTCAGTACACTTTGTCTCCCC-TTTTCACTCTGTCTCATTT
s HiC_scaffold_1 68349455 277 + 233722169 TTTTGATCTCAGATATCCCCAAAGTCTTGATGTCCATGACAGCAGTATTCAGAAGTgaggctttggaaggtgattagaccAATGAGGGCTCTAATCTCATCAGGGGATGAATCCATCAATAGATTCATAATTTAATGGGttattgggaggtggtggaaacttAGGAGGCAGAGACTAGCAGGAGAAAGTGAGTCCTTGA-GGTGTATCTTTAAAGGGTATATTTT-----------ATCCCTAGTTCCTTCTGCTTTCCCTGTCTCAttgtcttctctccctctccttt

a score=3925
s chr3            72335339 122 + 160039680 TTCATATATTAAAGACTTTATCTTCTGGATACTGATACTCAAAATAGA-CATTGGGGAACAGCTGGGTCATGAGGGCTCTGATCTCATCAATGGATTAATCCAATGGTAGATTTATAATTCAT
s HiC_scaffold_1 154922630 123 + 233722169 TTCCTTTGTGAAAGGCTTGCTTGTCAGCATGGCAGTGTCGAGAGGGGATCTTTGGGAAATGACTAGATGCTGAGAACTCTGCTCTCATCAGTGGATTTATCCAAGGATGGATTCATAGTCTAT

a score=4972
s chr3            72335389 136 + 160039680 TTGGGGAACAGCTGGGTCATGAGGGCTCTGATCTCATCAATGGATTAATCCAATGGTAGATTTATAATT------------CATGAGCTTTAGA---TGAAGGAACAAAATGTAGCAAATAAGATCTCTTTCAAGGCACTGTGTTCCTGAG
s HiC_scaffold_1 154788982 150 + 233722169 TTGGAAAGCAGTTGGATCATGATGGCTCTGACTTTATCAAGGAATTAATCAATTGATAGATTTGTAATTTGATGGTATTGCCTGGGACTTTAGAAATTTAAGGGATGGAACCTAGTTGAAAAGAG-TAAGTCAAGACAGCGTGTTCCTGGG

a score=6389
s chr3            72604313 108 + 160039680 ACTTTGATCTCCTTGGGGTCGAACTTGGGCAGCATGTTGGAGGTGGGTGGTGTGGAATGAACA-----TCAGAACAAACAAATAAAGTTGCTCCTTAGCCTCCTCTGAGCTGA
s HiC_scaffold_1 186677096 113 + 233722169 ACTTTGATCTCGTTGGGGTCGAACTTGGGCGGCATGGTGGAGGCGGCTGGTGTCGGATGAACCCGGATTCGGGACGACCGAAGAAAGTTGCACCTCTGCCTCCTCCTAGCCGA

a score=25629
s chr3           73477117 601 + 160039680 tttttataatataaaCAAACA-TGTCCACATTGTTTATTTCTCACAGTTCTTCTGATAAATGAACATTATTTAAGAACATACTCTATACACAGATAAGAAACATACAAAATGTTTTAAATGATGCACAACAAAATCCAGCAGTATAAAAGAAT---TGTGAAGTCTTGCTCACT----------------------------------------CATACAATCTTTTATGTATTTTGGGCAGACTACAAAAGAGGGAAAATTATCACCATATATATGATTTTTATATTAGGCAGTTTTCTTTGACATGCTGTACTGAAAACTCCA--CACAGAGGCAGAAGGCTATGTACTTTAAAAGGAATTAGTGGTG---TGAGTCAGA--CTTTACA--GTTACTACCACTGGCAATTCTCAACATAGTCTGTACACATCACATGATCATCTCATATAACATGACATT--AAAAATATATCTGCATGACAACTTCATGACATTCACACCCCATGAGCCGCTTACAGAAGCAAAGCCACAGCTAGGTCT-----TGCTTTGCTCTT---GGTAAGGACAGGTCATCGTGATTAAAAG---TTAGGTATCAA-ACCATTAAGCAGCTCCAGTCTACTACAGGCCATCAGTGACCA---CCAGACAGTGAGTTCTTTTAG
s HiC_scaffold_1 54644563 646 + 233722169 TCTTTTAGATAGAAACAGGTAACATCCACATAGTCTATTTC--ACAGTTCT---GACAAAGGAACATTATTCAAGAACGTACTGT----------------CACACGAAATGTTTTAAATGGTACACCACGAAATCCAGCAGTATAAAAGAATGCATGTGAACTGTTGCTTACTGTGCAGACTAAATCTAATCACTTGTttaaatagtaacaaaaatacAATCTTTTATGAATCTTGTTCAGAATACAAAAGGGAGAAATTC--TATCATATAAGGGATTTTTATGTTAGGTAGTTTTCTTTAATGAGTTTCACGGACAATTCCAAATACAGAGGGAGCAGTCTGTGTGTTTTAAA-GGAATTAATGATGCTCTGAGTTAGAGACTTTACACAGTTACTAACACCGGTACTTTTCACCATAGTTGGTACACATCACATGATCGTCTTATATAACACTACACTTAAAAAATATATCTGAGTGACGATTCTATAACATTCACACACCCTGAGCTGGTTA-AGAAGCAGTACCACGGTCGGCTCCTGCAGTGCTTTGCTGTTCACAGTAAGGTCAGTTTATTGTGGTTAAAAGAAATTAGGCATCAACATGGTTAAGCAGCTCCAGTGTACTAAAGGCCTTCAATGACCACTGCTGGACAGTGAGTTCCCTTAG

a score=10085
s chr3           73933086 288 + 160039680 TCCAAAGGAAGCAGAGCAGCTAAGGAAGCTGTTTACTGCTGATCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACAGTTTGAGAAATGGGGTACACTTCCAGACTGTGTGGTAATGATAGATCCCCAAAGAAAACATTCCAAGGGCTTTATTTTTGTGACCTACTCTTGTGTTGAAGTGGTGGATGCTGTAATGTGTGCTCGGCCTCACAAGGTTGATGGGCATGTGGTGGAACCAAAAAGAGCTGGTTCTAGAGAGGATTCTGTAAAGCCTGATGTCCATTT
s HiC_scaffold_1 21080569 288 + 233722169 TCCCAAGGAGCCAGAGCAGCTGTGCAAGCTCTTCATCAGAGGGCTGGGCCTCAGCACCACCAAGGAGAGTCTTAGAAGGCACTTTGAGCAGTGGGGAACACTCACCGACTGTGTGGTGATAAGAGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTCGTCACTTATGCCAGCgtggaggaggtggaggcagcCATGAAGGCCAGGCCACACCAGGTAGATGGCAGAGTGGTGCTAACCAAGAGAGCTGTATCCAGGGAAGACTCCCAAAGACCGGGTGCCTACCT

a score=21702
s chr3            73933086 739 + 160039680 TCCAAAGGAAGCAGAGCAGCTAAGGAAGCTGTTTACTGCTGATCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACAGTTTGAGAAATGGGGTACACTTCCAGACTGTGTGGTAATGATAGAT-----CCCCAAAGA--AAACATTCCAAGGGCTTTATTTTTGTGACCTACTCTTGTGTTGAAGTGGTGGATGCTGTAATGTGTGCTCGGCCTCACAAGGTTGATGGGCATGTGGTGGAACCAAAAAGAGCTGGTTCTAGAGAGGATTCTGTAAAGCCTGATGTCCATTTAATGTTGAAGAAAATATTTGTTGGATGTATTAAAGAGAAT-CAGAAGAATATAATCTGAGAGACTACTTTTAAAAGTATGGCAAAATTGAAATCATAGAAGTTATGGAAGCCAGGTAGAGTGGAAAAAAGAGAGGAGTTGCTTTTTTAACTTTGGATGATCATGACAAGTTC-----AAAAGTTTGTTATTCAGAAATACCACACTATTAATGGGGATAATTGTGAAATGAAAAGGGCCTT-TTGTAATAAGAGATACAGTCTCCTGGATCAC----AGAAAGGTCATGGATGTGGATCTGACAACTTTAT---GGGTCATAGAGGATACTT---TGGATATG------------GTGGAGGAAACTTTGGTGGACAAGGAGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtgatgatggtggataaaatggatttggaggtgatggtagcaactatcgtggtggt
s HiC_scaffold_1 138522958 739 + 233722169 TCCTAAAGAACCCAAACAGCTGTGGAAGCCCTTCATTGGACAGCTGAGCTTTGATACAACTGATGAATGTCTGAGAAGCCATTTTGAGTAATGAGGCACACTCACCAACTGTGTGGCCATGAGAGATGAGAGTTCCAAACACCAAGCGTTCCAGAGGCTTTGGGGTTGTCACTTATGCTACTATGGAGGAGGTGGGTGCAGCCATGAATACAAGGCCTCATAAAGTGGATGGAACAGTTGTAGAACCAAAGAAAGCTGTTTCAAGAGAAGATTCTCAAAGATCAGGTGCCCACTTAACTATGAAGAAGATCTTTGCTGGTGGCATTAAAGAAGATACTGAAGAACAGTACCT-AAAGGTTATTTTGAACAGTGCAGAGAAAATGAAGTGATTGAAATCATGA----CTGACTGAG-------------GCAGTGGTTTTTGTAACCTTTGATGACCATGA----TTCTATGGATAAGATTGTCATTCAGAAATACCATACTGTGAACGGCCACACCTGTGAAGTAAGGAAAGCCCTGTCAAAGCAGGAAAT---GGCTAGTGCTTCATCTAGACAGAGGTC-TGA--GTGGTTCTCGAAATTTTGTTGGTGGTTATAGAGGTTATTTTGCTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCAAAGTGGCTTTGGTGGCAGCTGTGGTG------GAGGTGG--ATAGTGACTGTGAGGATGGCTACAATGGACTTGGTAATTATGGAAGCAATTATGGAGGTGGT

a score=8142
s chr3            74000383 168 + 160039680 CCCCTTGGCAATCGACAAAGGG----TTTATTGGTGGCCTTGTTCTTATATCAGTCAGGGGCAGAGCAGATGGCAGTCCTTTGCTTATCCTAGCTTGATGCCTGGCTTAGTGCTCAATGCTGTCTTATGCCTAGGCCTCAT----AAaaatcaaatcaaatcaaattaaatcaaaa
s HiC_scaffold_1 195809928 175 + 233722169 ccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCT-GTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaaaaaggcaataagagcaaaa

a score=8352
s chr3            74036825 150 + 160039680 AAAAGATCAAGGCAGACCCCTGAGAATGGGCAAAGAGATACCT-GTCGGTGGTGTTGCTCTTACATCAGTCAGGGGCAGAGTAGATGGCAGACCTTTGTCCATCCTAACTTGATGCCTGGCTTAGTGAACAGAGCAGTTTTATGCCTAGGA
s HiC_scaffold_1 195809913 150 + 233722169 aaaaagcaaaaagacccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCT-GTTTGGTGGCCAGAGCTGTTTCATGTTTAGGA

a score=25646
s chr3           74323520 496 + 160039680 TTAGGTCATGAATTCATATGGAATGGTCTCCAACATCTCAGGC-ACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTCC-----TTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCC-GAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGA--ATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGA
s HiC_scaffold_1 80725745 502 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATAT--AGTAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCC-AAGAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGA

a score=26052
s chr3            74323520 503 + 160039680 TTAGGTCATGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTCC-----TTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCG----AATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGA--ATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGAGACGATG
s HiC_scaffold_1 178274457 512 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGA--AGATGATG

a score=15514
s chr3           74323528 490 + 160039680 TGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTCCTTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGA--CTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATG-GTTCCTAAAAGGCCTAGAGAATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGAGA
s HiC_scaffold_1 32421034 429 + 233722169 TGAATTCATAGGGA---GTCTCCA---------GCTCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTGGGC--TGCAGGctggcatttc-----------------tttctttttg----------tcatcttttttctTGATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGA-TCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGGA---CATCTCTGGCAT-TCTTAT-GGACAGTACCCACTCCCTTG---TCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCTCAggttttttccctttc--------------tcatttcTGCAAATTAGTAGAAGAGA

a score=25169
s chr3           74323528 488 + 160039680 TGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTCC-----TTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACC-CTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGA--ATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGA
s HiC_scaffold_1 16174769 486 + 233722169 TGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAAC--TCTGAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGA

a score=11677
s chr3           74323707 361 + 160039680 CTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGAATATAC--CAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTAC--------------TGTACGAGACGATGCATGCCTCATTGTTTTTTTTTTTTTTCTTTTAATTATTAtttttt
s HiC_scaffold_1 99840708 363 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCA-------AACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTACAAAGATGACAGTTTTTGACAAAAGGAAGCTCGTGaca-------ttctgtttttcctttaacTCTTACTTTTT

a score=15180
s chr3           74481347 457 + 160039680 TAATATTTTATTGCCATATCTGATAAGATAACAATTTTGTATGAAATCTCCATACTTTGTACATTTTCAGATTTTTTTCCTTAA-------TTACAGGTGTATAAAAGCATCCAGCTATTTATACCTTTCAGGA--CACAATTAGGCAAATTTATTAACAAGTAGCTTCAAAAATGTCCTTGCCAGGTTTAGAAAATCTACTCACCTTTG-GCCCATTCTACAATGCTGAAATGTCAACATACATTTAATTTCG--GTTTACAGAGATATACTGGCAGGCATCCACACCTTCCTCAAGGAAAACCATGTTGAAATTATTTTCAAAAAG----TAAAAGATAAGCTTGGTCATAGTACAAGTCCCACACCATGTAGATGAGAACTCCACCTCCACATGATTGTCCTCTGCATAATTCAAGGC-TCTTGAAAAAAAATCAACTCTCTACTCTAGATCATCTGGATCACATCAGCTG
s HiC_scaffold_1  5527339 458 + 233722169 tagtattttattgtaatttataaTCAGATGGCAGTTGGGTATATAGTTTCCATACTTCAtac---------tttttgtaaataaaaaaaaattaaaagttttaaacagCTGATCGCTGGTTCTATTCTTCAGAAAACACAATTAGACTAACTCATTAATG-GTGGCTTCAAGCTTTTCCTTGTTAGCGCCAGAAAACTCACTCAcctttttaccctttttaaaaaactggaaggTCGGCATACATTTGACTTCACATTCTGCAGCAACGTCCTGACAGTCATCCACATCTACTTCAAGGAACACCACCTTGGAATATTTTTCAGACAGGGAATGAAAGAAAGGCTTGATCATTTTGCAAGGCCCACACCATGTGGCTGAGAAATCAACTACTACAAGTTTATCTCCTGCATCATTCAAGGCTTCTTGAAAG------GCCTCTTTGCTTTCAATCTGCTGCACCATTTTGGCTG

a score=5064
s chr3            74671703 286 + 160039680 TTAGGACTAGAAGTGTTTCAGATTTTATACTTTTAATTTGTTTACT------GAATATTTACACCTACATAATGAGACTGCTGAAAAATAACACTCAAATTTAAACATTAAGTTTATTTGTGTTTTATATGCATCTTATACATAAAACCTGAAGGtaattttatataatatttttaGTTCACCTACCTGTGGGCTGCATCCTA-----------------TCACAGTTCCTAAG------------------CAAAATTTTCCACAGATGACATGAAGTTACTGTTTCAAAAGCAGCCAATTGTGTAAAATCTATTATTTGAATTTT
s HiC_scaffold_1 221976110 303 + 233722169 TTGGGACCAGAAGT-------ATTTTGAATGTCTGATTTGTTTTGGATGTGGGAATATTTGTACACATATAATTCAGTATCTTGGGGATGGAGCCCTAATCTAAACAGGAAACCCATTTATGTTTTACATGCACCTTATACACATAACCTGAAAGCAAGCCGGGGAAGGATTCCT-----------CCGTGAGCTGGATCCCACTAGTGCACCCGCATTTTCACATATGCCAAGGTCACATAAGGTCAGGCATGGAATTTTCTGCTTGTGGCATCATGTTGATACTCAAAAAGCTTTGGGTTTTggagcat------tttgaatttt

a score=9879
s chr3            74815081 385 + 160039680 GGGCCACAAGAAGGGGGCCAAGCTGACTCCTGAAGAGGAAGAGATTTTAAACAAAA-GCGATCAAAGAAAATTCAAAAGAAATACAACGAAAGGAAAAAGAATGCCAAAATCAGCAGCCTCCTGGAGAAGCAGTTCCAGCAGGGCGAGCTTCTCGCCTGCGTTGCCTCAAGACCAGGCCAGTGTGGCAGAGCAGACCGCTATGTGCTCGAAGGCAAGGAGCTGGAGTTCTATCTGCGGAAGATCAAAGCCCAGAAAGGCAAATGAGCCTCATGCATAGTGTAATAATCTAAAAAAAAAAAAAAAAGTGATATCTGTGTTGACATCACAATGTTTCTGTCATTAATATGGAGAGAACAATGAGGAAGAAAAGTAAAAGTGAATGAAC
s HiC_scaffold_1 217171697 349 + 233722169 GAGCTACAAACAAGAG-CCAAGCTCATTCCTGAGAAGTAAGAGATTTTAAACTAGGTACAAttctaaaaaat-caaaagaagtatGTTGAAAAGAAAAGTAATGCCTCCATCAGCA-CTGTCTGAAGAGGTAGTTCCAGTGAGGCAAGCTTCTTGCCTGAACTGTATCAAGATGGGGCCAGTGAGGCCCAGTGGAGGGTAATATTCTAGGGAG-AAGTCTCTTGAGCTCCATGTGAGGAAAATCAAGGTCTGGAACAGAAAGTAAGTCTT-TGC------TCCTGGCTGAGCACatataataaaagta-------------------------tttgttatt-ctatgaaagaaacaaaaaagaagatagGCAAAGGGGAATGGGC

a score=20957
s chr3            75391315 1533 + 160039680 tggGTGACTCAGAAATCCTACATGATGTACACCTCTGGCCCCTGGGCCTTCAGCAGTTGGTCATACACGAGTGCACCCGGTGCCCACATCAGCTCTTCCAGCTTTGTCCAGGTGGGCAGTGGCAGCACTTTCCGAGGAAGCCTGGGTACCAGCATGAGTCTGGGCAGCTTTGGCAGGGCATCACAGTGGTCATGGTGAACCAGAGCTCCTGAGCCTCATGAAGCTGGAGATGGACCCC-AACATTCCAGGCTGTGCTCACTCAGAAGAAGGAGCAAATTAAA---TCCCGTAACAAGTTTGCCTCCTTCACTAACAAG------------GTACCACAGACATCTTGTTGCTGTTGTTGTAGCAACAGAAGACAGCAAGGGGCAACATGGACAGCACGCTTAAGAGCTATATCAGCTACCTTCGCAAGCAGCTGGAAGCCCTGGGCCAGGAGAAGCTAAAACTGGAGGCGGAGCTCAGCAATATGCAGGGCCTGGTGGAGGACTTCAAGA----GTATGAGGATGAGATAAACAAGAGATCAGAGATGGAGAATGAATTTGTCTTCATCAAGAAGGAAGTGGACAAAGCATACAGGAACAAGGTGAAAGTGGAGTGCTGCCTGGAAGGGCTGATTGATGCAGATCCATGAAGAAGAGATCTGTGAGCTGCAGTCTCAGACCTCAGACACATCTATGGTATTGTCCATGGACAGCATCTGTTCCCTGGGCATAGACATCATCTCTGAAGTTTGTGCCCAGTATGAGGATACCATCAACCGTATCCAGGATGAGGCTGAAAGCATGTACCAGATCAACTAGGAGAAAAGGCAGACCCTGGCTGAGAAGCATAGGGATAACCTGCGCTGCACAAAGACAGAGAGAGCCCCAACATCAACTGCCTGCAGACAGAGATTGAAAGACTCAAAGGCCAGAGGGCAACCCTGGAGGCTGCCATTGTTGATGCCGAGCAACGTGGGGAAGAG----TTAAGTATGCTAATGCCAAGTTGCCAAGTTGGCTGAGCTGGAGACTGCCCTGCAGCGGGCCAAGCAGGACATGGTCAGGCAGCTGCTACAGA--------ACCAGGAGCTGATGAA-----CA-TCAACATCGAGATCTTCACTTACTGCAAGCCACTGGAGGGTGAGCAGAGCAGGCTGGAGTCTGGGATGCAAAACTCAGAAGGACTGAGTGCTTCACTAGCCCTGGCTTCAGCTAT---AGAATGAGATTCTT----------------TCAGCCCT-GTTTCAGTTCTGTCCGGGACTCCAGCACTTTTAGCCGCACTAAG---GCCATGGTCGTGAAGAAGATTGAAACTTCCAATGGGAAGCTGGTTTCCCAGTGTT-TGATAGCCTGTCCAAGTGAATGGCCACCGAAGTCGTTGCCAACCT---GGGCTTCTGCAGCTGCTCAGCCACTCATGGGGGAGAGAGCTATATGACAGAGTGCAAGAAACAAAAGATCTGCAAGAGGATCAGCCCTAACCATCTGGCCAACCTGGGAAGGAATTTCCTATCTGGGATATCCC-AATGGCCCCTGCTTTCCACCCAAACCCAATTCAACTGTATTTTCC
s HiC_scaffold_1 138555129 1184 + 233722169 TGGGTGACCCAGAAGTCCTACAACATGTCCACCTCTGGGCCC-AGGCCATCAGCAGCCTCTGCTCCAC---------------CCGTACCCGCTCCTCCAGCTTCTCCCAAATGGGCAGCAGCCACAGCTTCCAGGGCGGCCTGGGG------------CTGGGTGGCTATGGTAGGAC-TGGCAGTG----TGAGGAAC---AGCACAAATGCCC-----------AGGTGGACCCCCAACATTC-AGGCCATGCACATTCAGGAGAAGGGGCAGATCAAGGACTTCAACAAGAAGTTTGCCTCCTTCATCGACAAGCTGCAGTTTCTGGAGCAGCAAAGACCAAGTGGAGCGTCCTGCAGCAGCAGAAGGCATCCATCGCTACACGGGGCAACACATTCGAAAGCTCCATCAGAAACCTCTGGCCACTGCTGGA--CACAGGGTCAGGGGAAGC------------------------------GGGGGCTGGTGGAGGACTTCAAGAATAAGTAGGAAGATGAGATCACCATGCATACAGAAATGGAGAATGAATTAGTCCACATCAAGAGGGATGTGAGTG--GTTTATATGGACGAGGTG----------------------------------------------------------GAGCTCGAGTCTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGG-----------------------------------GAGACTGAGGCCACCAAAGGCCAGAGAGCATCCCTGGAGGCTGTCACCACCAATGCCATGCAGCGTGAGGACATGGCCACTAAGGATGCCAA--------TGTCAAGCTGGCCCAGCCGAAGGCTGCGCTGCAGAAGGCCAACCAGGCCAC---------GCTACCACAGGGCACAAGTACCTGGAGCTGGTCAAGCTGGCACTGGACATCCAGATGGCCACCAACCACAAGCTGCTGGATGGTGAGGAGAACAGACTGGAGGCCTAGAGGCAGAGCT---------TGAGTGTCACATGAAAACCACCAGTGGCTATGCAGGAGTGGAGAGCTCACCCTAGGGGGCATAATAAGCCCTGGCTTTGGGAGCCTCCAAAGCCCTGG---TTTCACCCACAACAAGTCTGCCATGGTTGCAAGGAAGACTGAGACTCATGATGAGAAGCTGGTGTCCGAGACTTCTGATGTCTTTCCCAAGCAAATGG--GCCACAGCAGCTCCCAGCCCACAGCCCTGCCGTGGCTGCCCAG-AGCCTACGGAGGAGACAGCTGTACATGGGAGCATTGGGAACTAGAGATCCACCCGAAGCTCAGCTCT-------------ACCCTGGGGGGAAT---CTGCCTGGGGTACCCCTTGTTGCCTATGCCCTCCACCAAAAAGcaattc-attgtctttttc

a score=9949
s chr3           75646287 406 + 160039680 TGGTGGCTTTTTCTTCAAATCTTATGATCAGAATCCTTCATTTCCAATAGCTCTCCACTAAATCTTCCACAGAAACAAGGATGGGGGGCTGCAGATGAAGCAGCTGGCCTAGAAAAGCATCTATAAGAGAGGATCTGTGTG-----GCAGAGATGGCTAGGGAGGGTTAAGTTGGAAATGTTCCGGCATCCTGCCAATGCCCAGCCACTCAGGAGGAACACAGGTACtgtca-----aaatgtgaagggcctgagattccactggccttgcaa--ggtgagaactgtctggcacactctcttggatgc-tgtagaaagca-ggagaatcctgagtcgaagtgaaaagaaatgcccctattggcagcaattgcagcacccaaggaactggctggcctatttcgcttggctcctgaggccct
s HiC_scaffold_1 96985196 416 + 233722169 TGGTGCCTTTTCTTTGAAATCCTATAGCTAGAGTACATCACTTCTAACAGCCGTCTATTAATTCTTCCTCACAATTAAGGCTGGAGAGTTATAAATGCTACAATAAGCCTAGAAAAACATTCATAGGAGAAACTATTCATAAGAGTGCAAATATTATGAGAGGGAGAAAAGACAAGGACACCAAATTACTCTACCAGTGTCCAaccagaagggaaggaaaagcagaTTATCATCCAGAAATATAAAGGGTCTGTGATTTTATtcttctcaaaaacaacaaaattagccTGCTGCCCTCTCTTGGATGCAGGTAGAAGACACAAAGACTCCTGGATCTGAGACAAAAGAAAGATTACTGTTCCCAGCAATAAAACTATCCAGAGAATCAGCATTTCTGTATC----AGCTCCTGAGACCCT

a score=3712
s chr3           76142535 66 + 160039680 TTCCAGTTTTATTATTACCTTGTGGGACAGCTATCATAAATGTTGTCTGTGATGGACTGAGCTGCT
s HiC_scaffold_1 14577338 66 + 233722169 TTCCAGTTTTATTATAATCTTATGAGATTGCCATCATATATGCAGTCTGTTATTGACTGAAATGTT

a score=4212
s chr3           76503141 138 + 160039680 AAATAACACACA-TAT-TGCTTTAAATCTACAGTTCTGTTACTATATAATTCAGCTTATTTTATAATCTGGCGATTAAACATAGGGTCCCACTAATGTTAGGTAAACATTCTGCTACTGATTTCTATCTTCAGCCCATCA
s HiC_scaffold_1 99081015 133 + 233722169 AAATAgcacataatatataatttaattttttagttc----acattgtaattt---tttttttctgtgtgggGGATTAAACCTAGTGTCTCACTAATGCTAAGTAAGCACTCTGCCACTGCACTATAGTCTCAGCTCCTCA

a score=27184
s chr3            76822029 907 + 160039680 gagaaactggaaaag----gtgataacatttgaaatg-tGAGAATGCTGCCTCATGCCCCTGGATTCCAAATACAGGCCATACCTGAGGATGCCAGAAGAGATCGGTGATGAAGATGAGGAAGATCCTGACAAAGACATCGCCATCTGTTCCTCTGACAAACACATTGTCTGTGAGCATGAATTCTCAGATTCAGTTGAGGAGGGAGAAGGTAGTCACAAAAGCTCTTCTAACTTCAAAAAAGCCAAAAGAGTCAAAACAAAGGATGAGAAAGAGAAAGATACCAAAGAAGAAAAAAAGAAGTCACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGTTTAAAAAAGAGGTCAAGTTGGCCTGAGCA-AGGTCTGCAGCTC--CATTTTTCCCTAAGTTCCTCAATTTTCCTC---AATTTTTCAGATGTTATACTTTGTAT---TCTGTGtatttata-taaaatatatttaatat-aaCATACCCAGAGACTATATAGGGA--CCAGGAACC-AGAGCACAGGGCAGTATTGCTGGGAGACTTCTTCCCAGAGCTACCTTGTTCCT---CCTGCCCCAGGTCTTAGTTTTGAACCA-------CTTAGTTCTGAGTGAAAAGAAAACAACCAGAAGACAAAGTCCTGAGAAGCCAAGTGCCTGCTTAGCAGCCCTGTTCAGATGCCTTTATTAAGCTTTTTAGAAGG---GGTGACTGCATTTTCTGGGACCCCCTTTTAGGCTTGGGTAATATCCGTCAT-TTTTGATTGGTTCTGT--TTATATCTTCCCACCCATCCTGGGCA-------------ATATTGCCCTGTCCTCCCCCAAATCTGTAGGTGGAGGTTGTTAGCCTAGCTTCATTTT-TGAGA---TATTTTCAT-TTTGTGAGACTCTTTGTAATAAAACAGCACATTTTCTATAAACAAATAAA
s HiC_scaffold_1 175736933 889 + 233722169 GAAAACCTGGAGAAGAGCAGTGGC--CCTTTGAGACCCTGAGAATGCTGCCCCATGC-----------------AGACAATTACTGAGGA----------GAGTGGTGATGAGGACAAAGAGGGCCCTGACGAGAACATC------------TCTGCCAAGCAAGTTGTCTGTGA---------------CTCAGATGAGGAGGGAGAAGGTGGCCACTAGAACTCTTCCAACTACAAGAAAACCAGGAGAGTCAAAACagaagatgagaaagagagagacccagaaga--gaagaaagaggttcCAGAAGAGGACAGAACCAAGGAGGAGCAGCTAGAAGCCAGAGGGGTCAAAGAGGAAGTCAAGTTGGCCTATGCAGACCTCTCCAACTCAGCCTTCTTACCATatcccctccctttctccctgtagcccctgagattttattttttctatctctctatatatttatattaaaagtcATGAAATATAAATGTCCCTAGGGACTAGTTAGGTAAGCCAGGGCCCTTGAATGCAGGGCAGCTATGCTGGGGGGACTTTTCTAGCAACTGTCTTGCTCCCCAACCCTCCCCAAGTCTTAGTTTTAAACCATAAAGGGTACAGATCTAGATGGAAGCAGTGCATCCAT-AGATGAAGTCCTGATGTGCTGAAGGCCTATGTAGCAGCTTTGGAAAGGTACCCCTCGTGAGTGTTCTGGAAGGATAGCTCCCTTCATTCTTCAGGCTC----------CTAAGGTAACATTAGCCATACTTAGATCGGTTCTGTTCTCATATCTTCACACCGGCCCCCAATGAACTAAGAAACTCACACTGACCTGTGTTCACCCAGTTCTGCAGGTGGAGGCTGGTAATCTAGCTTCTTTTGATGAgacattattttcatgtttttgaga--cTGTGTAATAAAACGGtacatttcttaaataaaaacaaa

a score=3617
s chr3           76842392 66 + 160039680 AGGAGTATATCTAAATGATGGAATGATTGTCTAGCATGTCAGAAGCTCAAAATATAACCCATAGAA
s HiC_scaffold_1 87780091 66 + 233722169 AGGTATATAGCTCAATGTTGGAACGCTTGTCTAGCATGTCTGAGGCCCTGGATACAATCCACAGAA

a score=32715
s chr3           76884529 795 + 160039680 CCCTATTTCCCACAAAACAAATGC--------CCAGCATTGTGGGATACAATTCACATAGACATCTTGCCTACAACAACTGCAGGATGGGAGGGAAACCAGCACCAACAGCTGGGACTCGGCATCCTCTGTCATTGTAATTCCAAAGCCTCCAAAGCCACCAGATAAGCAACTAACACCCTATATGAGGTACAACATAAAGGTCTGGGACC-----AAGGCTTACAACCCTGATCTAAAATAGTGGAATATTAACAAGATTGTTTGTAGCATATGATGAGATCTTAATGATGAAGAGAAGCAAGAATATTTAAATGGACATAAAGCAAAAATGATATGGTACAATGACTCTCTGAAGGTCTATCAAAATTCCCCT-TAGTACTTTGCATATTTTATAACAAAAAG-CATGCAAGAA-TACATTACAGGAAGAAAGTCTACAAAGAAAGTCTAGAATGGAGAAAGGAGAACATCATATGAGCATTCAGCCTGCTGAGGATCTGGATAACTACAATGATGGCTTTTCAATGAAGCACACAGCCACTGCCCATTTCCAGAGAAACCACCGCCTCCCTCAACAGTGAGATCCTCAGTGAGAGTGTGGTACCTCGTGTGGAGTTGGTTGTCACAACGGCTAGAATGCAATTCCACAAGCAACAGGTCTAGTCTTTAATGGTTAG-------TCAGAAAAAAATAGAAGCCAAGCTTCTTCAGATAGAGGGACAATACCAGAAAAAGAAGAGGAAATTCCTAGAAAGCATAGACTCTTTTAACAACAGCCTTAAAATGATATGTGTTCTGAAGGTGAAAGTAGA
s HiC_scaffold_1 14210914 790 + 233722169 CCCTAGCTCCTACAACACAAACACGTAGCACACCAGGATTTGCAGATACAATCCG--TAGTTATC--AGCTACAACAACTACAGCCCGGG-----------CACCAACAGCCAGGTCATGGAGTCCTCTGGTATTATGATTCCAAAACCTCCAAAGCCACCAAATAAGCCACTCATGCCTTGCATGAGGTACAGCAGAGAGGTGTGGGATCAAGTAAAGGCTTCCAATCCTGACCTAAGGTTGTGGGAAATTGGCAAGATTATTGATGGCATGTGGCAAGATCTCACTGATGAAGAGAAACAAGAATGTTTAaatgaatgtgaaaaaaatatgaGAGAGTACAGTGAATCTATGAAGGCCTGTCATAGTTGCTTTGCCATGTGTTGCTTACGTCAGTGTAAAAAGTTGTGCACGAACTGCATGAGAGGAAGAAAGTT------GAGAGTCCTGCATGTAGAAAGGAAACTTTC--ATGAGCATTCATCGTCCTGAAGATCCAGA-GGTGATGAGGATGACTCTCCTGTGTAGTATACAGCCACCACCAGTTTCCAGAGAAACCTCTG----CCTCATCAGTGAAATCCTCTGTAAGAGTGTGGTGCCAGACAGTCAGTCAGTTGTCACAACAGCTAGGATACAGGTCCTCAAGTGACAAGACCGGTTCTCAATGGTTCGTGTTTCattaacaaaaactgaaagctgaaCTTCTTCAAATACAGGAAAGGTccctgaaaaagaaaagggaattcCTGGAAAGCACAGATTCATTTAACAGTCAATTTAAAAAGTTGTGTGATCTGAAGGTGGAAGTAGA

a score=5564
s chr3            77872897 145 + 160039680 CTGCTGGCAGGCCCAGAGCTTGTGTGAGCTGATTAATAACAAA---TACTTTGAGCTGCTTATAAAAAATGGTCCTTTGCCACTGCATTCTGATTTAGTGAGGCCAGTTGAAGAAAC--CTTAGGTATCTTTT-GGCTGTATGTCCTGCCC
s HiC_scaffold_1 194459411 151 + 233722169 CTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCAGCCGCTTATACAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTGTCC

a score=8071
s chr3           77872923 272 + 160039680 AGCTGATTAATAACAAAT---ACTTTGAGCTGCTTATAAAAAATGGTCCTTTGCCACTGCATTCTGATTTAGTGAGGCCAGTTGAAGAAACC--TTAGGTATCTTTTGG-CTGTATGTCCTGCCCAATGCCAAAGTTCTTGAGCCTTTTCTCAAACAAAGGATTGGCCACCATTTTTCCTTCTGTTTCTTCATGACAGTGGAGGCCAGGATCACCTTCTACCCCTTGGCCTTCTTTCCTGTGGGCTACTTGCTTGGTTGGAAGA-----TCttgattgtgttc
s HiC_scaffold_1 62308105 272 + 233722169 aactggtTAATCACAGGTGGCACCTTCAGCTGCCTACACAGGATTG-CCACTGTCACTGCA----------GCAGGGCCATTTGACAAAGTGGGTGAGAGCTCTCTTGGGCTGGCTGTCCTGTCCAATGCCAGAGTTCTTTGACCTCTTCTTAGACAGGGAATGTATCACCTTCTTGGCCTCCTGCTTTTTATGACAGCAGGAGGCAGGGCCACTTTTTTCCCCTTGGCCTTCTTCCTTTTTGTCACCTTGGGCAGCTGACAgagctgtttttgtttgtttcc

a score=7385
s chr3            77873040 123 + 160039680 CCAATGCCAAAGTTCTTGAGCCTTTTCTCAAACAAAGGATTGGCCACCATTTTT-CCTTCTGTTTCTTCATGACAGTGGAGGCCAGGATCACCTTCTACCCCTTGGCCTTCTTTCCTGTGGGCT
s HiC_scaffold_1 194460178 124 + 233722169 CCGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCCGGTGCCACCTTCTTCCCCTTGGCTTTCTTTCCTTTCGGCt

a score=19589
s chr3           78156859 1949 + 160039680 TTTTCTTCCTTAGCCTTCTTTCCATAGAA-TCCATACGAATTTTAACTTAGTTGTCCTCCAGCACAGCCATCTCCTCATGAGCCTCAGTAAACACTCCTACCTTCATTCCCCTACCCACATATGAGTGAACAAAG---CAGTCGGCACAAATCATGTCAGACATGATGTCAAAGTGAGATCTTACCTCATCAAGGGCCATGATCTTGTTCTGCATGTTCACAGCTCATATTGCCTAAGCCAGGT-----------AATATAGTAGGTAGTTGGCAATTAATCCCAGTTCATAAGCCAACGGTCCACCAGTTCACTA-CTAGATGTTATAATG-GGCTAGATGGTGACAATGGCAGCAATGCCATCTTTAGGAATCAAAGATT-ATGGTTGAATAGGCA--------TGTATTTACCATGGTTATAATCATATCTTATCATATGATTGCATGGTTCTAAGAAGATTCTGATGAGCTCTGCTA-----GAATATGTATGCTAGGCTTTCTCAGGGCAAATGGTGGTGACATATGTGACCAGAAAGAA-TAGGCATGGGAGTAAGCTAA-ATGTTGCTCCAAAATTCTGTCAGATCAGAATACTCTATACTCTATTGAATTTGAGGGAAACATACATGGGAGGCATGATCTAGGTAATAATGTTTTGCTTTTCCTGCCCACAGTAAGAAAATACCCCCATTCATGTTGGCCAGGCTGGTAACCACTGGTAGCACTTGCTGGTAGATGTACTACCTAGACCTATCATCCATCATGATGGCAAATTAACAAAACTATTTTGGAGAGATGACTCCTTTAGCTCTTTCTTTACAGAGACAGTCTCTGACTAGTATGCATATAGGATAACTGATATAAACTTGTAGGTTAATGAGCATAAAAAGATTAGTATAAGTTGGGCATT-GAAATTAAGGTTTCTCCAACAGATATACTACATGGCCTCATTGTTTACTGTGAATACACATGTACTTAGAGTGCTCAAGCATAGAGTGGATGATGAGGATGGAACTGTAGGGCTAAACTCCTACAGTTGATACCTGGTATATCTAGTAAATAAAAAACTCTAGCTTGGGATTCATACAATAATTAACAGAGAGAACATTTCCACCAGTAGGAAGGTGAACCCAGAGTTAGTTCTAACACAAAACATGTGAAA-ATCAAGAATCTCTGAAGACCTACACACTGGTTAGACTGTACAGGAAGAGGAGAGGTGTAATGTTTACTTCCAGGACATATTTCATTATTTTGATAGTAATTATAACTCTTTTTAATAATGAATCATATCCAACTGATGTGAGCATGGGGAGGGGGCTGGTGGTA--CAACAGACCCATCATGAATTGCCCTATAACCTAGGAAACATCTGGTA-------GAAGAATTAG-----CAGAGTGAGCATCCTGTTCTACATTTGGCAGTCACTGAAGA------------------AAGAATGCTGAGAGTTGGCCACTCCATTAACTTTAGA-----CTCCAGTTAAATGCATATTTACACACAGCATTTATAAACTTGG------ACATTGAGGTCATTGATCTCCTTTCCAATGGTGTAGAACCCATGCACATAGTTATTTGTAGCATCTTGCTT-----TGATGAGCTCCTTGGGGAAGAAGAGCTGAGAGTA------ACTACTAATGTGTACTAGATGAGG--------------TAAGCAGAAGCCA----GCTACCCATCACTAACAACCTTCCC------------ATGCCTGTT------CACATTGCAGGGCTTGAAGAACC-----CTAACTGAATATGTAACCAGTGTGGAAAGA-----------------------------------CAGC------------------------------------------------AGGCAAGAC--------------------------CCTCTGGCACATGT----------------AACAAGGACCAAGGGTTCCAGGTCTACAAAAGTTGACAAGAATACATGCCTT---------GTT--------AAGTATTGCTGAAGGAGCCATATGCTGCTACAATGATTTTGTCACTTAGCATCTGGCTATCTGGCAGAAAGCCGTAATCTAACTCATAGAGTTCCCATGTGGTATTGCCAATCCGGATGCTGACCTGGCCGACGTGAATGGAGATATATGCTCACTGTGGG
s HiC_scaffold_1   774489 1903 + 233722169 TCTTCtccctcatcctcatcctcatagGAGTCGATGCCCACTTCTTCATAATCCTTCTCCAGGGCAGCCATATCCTCCCGGGCCTCTGAGAACTCACCCTCCTCCATGCCCTCTCCTACATACCAGTGTACAAAAGCCCTCTTGGCATACATCAGGTCGAACTTGTGGTCCAGGCGGGCCCAGGCCTCTGCGATGGCGGTTGTGTTGCTTAGCATGCACACGGCACGCTGCACCTTGGCCAGGTCGCCCCCAGGCACCACCGTGGGTGGCTGGTAGTTGATACCAACCTTGAAGCCCGTGGGGCACCAGTCCACAAACTGGATGCTGCGCTTCGTCTTGATGGCCGCGATGGCAGCATTGACATCCTTGGGTACCACATCTCCGCGGTACAGCAGGCAGCAGGCCATGTACTTGCCGTGCCGGGGGTCGCACTTCACCATCTGGTTGGCAGGCTCGAAGCAGGCATTGGTGATCTCTGCCACTGACAGCTGCTCGTGGTAGGCCTTCTCGGCAGAGATGACTGGTGCATAGGTGGCCAGCGGGAAATGGATGCGAGGGTAGGGCAccaggttggtctggaactcaGTCAGGTCC--ACATTGAGGGCCCCATCAAAGCGCAGGGAGGCGGTGATGGAGGACACAATCTGGCTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCGGTT---------------------------------------------------------GAGGTTGGTGTAGGTGGGGCGCTCGATGTCCAGGTTGCGGCGGCAGATGTCGTAGATGGCTTCATTGTCCACCATGAAGGCACAG----TCTGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTAGGGCTCgaccacagctgtggacacctgGGGAGCTGGGTAGATGGAGAACTCCAGCTTGGACTTCTTGCCATAGTCAACGGAGAG--CCGCTCCATCAGGAGGGAGGTGAAGCCAGAGCCGGTGCCCCCTCCAAAGCTGTGGAATACCAGGAAGCCCTGAAGTCCTGTGCACTGGTCAGACtg--aaagtagagaaaaag-------------------------------------------------------------aaagagccatGTCACAAGGGTGGAAG-GTGGGGAGGCAAGTGGGGGGAGCTGAGGAACTTTTC-----TAGCTCCATGAACTCTCAAATATCTTGAAAGTTAGGGACTAATGAGAGACTCACAGTG-GCATCGCATTCTAGAACATATAGCTAGAGATGACCTCCTGATACGGATCTGAAAAAAGCTTTTTCCTACCCATTTGCTTAGTCACAGATGTTCCTTTCCTTCCATGCCAATTCTTAC-CAG--TTTTCGGATCCGGTCCAGCACA---GGGTCAATGATCTCCTTGCCAATGGTGTAGTGGCCCCGGGCATAGTTGTTCGCAGCATCTTCTTTCCCAGTGATGAGCTGCTCTGGGTGGAAGAGCTGTCGATATGGCCCATTTCGGATCTCATCTGGAAGGGCATAAACcacactactgagctaaaaccACAAGGCTATGC-TCAGCTGGGGCCTTCCTCCCTCCAGTGTGATATCTGCTGCCAGACAGATGGAAGAGCTAGCTCATCCTTCTGCCAACCCAAGATAT---CAGTGTGGGAGAAACCCAGACCTGCTGTGGTCCATGCCAGGCTGCGATCAGCTCCCCTGCTTTATCTTCAGTTAGGGCTGGGAGTTtttcagagccaggaagccaaGACTAGATACCCTCTCCTCAGACTATCCACCTCCCTCAAATTTGCGCCCTCGTCTGCTTACCAATTACAGTGGGTTCCAGATCCACAAAAACTGCCCGGGGCACATGTTTTCCAGCACCAGTTTCACAGAAGAAGGTTG-TGAAGGAGTCATCTCCTCCACCGATGGTCTTGTCACTGGGCATCTGCCCATCAGGTTGGATCCCATGTTCCAGGCAGTAGAGCTCCCAGCAGGCATTGCCCATCTGGACACCTGCCTGCCCCACATGGACTGAGATGCATTCACGCTGAGGG

a score=6752
s chr3            78339864 122 + 160039680 GGTGGTGCTCTTATATCAGTCAGAAGCATAGCAGATGGCAGTCCTTTGTTCATCCTAGCTTGATCCTTGGCTTAGTGGCCAGAGCTGTCTTATGCTTAGGACTCATAAAaaatcaaatcaaa
s HiC_scaffold_1 195809963 121 + 233722169 GGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCT-GTTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatgatgaaaaaaaaaaaa

a score=9500
s chr3            78486794 447 + 160039680 CAGAACACATCTAGCGATTCCTTGCACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCT--GACTGAAGCCCTTCCCACACTGCTGacacg--------tgtagggtttct----------------ctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTG
s HiC_scaffold_1 125439845 471 + 233722169 CAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTG--GTTGGCCAGGTTGGACCTGCGCACGAAGCCCTTCCCGCACTCCCCGCAGGCAAAAGGCCGCAGCGCCTCTGCGCCCGCACCGCTGGCCGCTGCGTGTGCACGCCGGTGGCTGAGCAGGTGTGAGCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTGCAGGCGGCGGTGCTTGAGCAGGTCTGCGCGCCAGCTGAAGCTCTTGCCGCAGTCCGCACACAGGTTGGGCCGCTCGCCTGTGTGCAGGCGCAGGTGGTTGGTCAGGTAGGTGTTGCGACTGAAGCCCTTGCCGCACTCCCCACAGCGGAAAGGCTTCTCGCGTG

a score=21747
s chr3            78486813 853 + 160039680 CCTTGCAC-TGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaag--------gtttct----------------cctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaa--------tcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGC
s HiC_scaffold_1 125439443 878 + 233722169 CCTAGCACAGGTGTAACTTCTGGTGCTGTGCGAGGTGCGTTTTGTAGCGGAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGAAGTCGCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGGTTGGCCAGGTTGGACCTGCGCACGAAGCCCTTCCCGCACTCCCCGCAGGCAAAAGGCCGCAGCGCCTCTGCGCCCGCACCGCTGGCCGCTGCGTGTGCACGCCGGTGGCTGAGCAGGTGTGAGCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTGCAGGCGGCGGTGCTTGAGCAGGTCT----GCGCGCCAGC----TGAAGCTCTTGCCGCAGTCCGCACACAGGTTGGGCCGCTCGCCTGTGTGCAGGCGCAGGTGGTTGGTCAGGTAGGTGTTGCGACTGAAGCCCTTGCCGCACTCCCCACAGCGGAAAGGCTTCTCGCGTGGGGGC

a score=17943
s chr3            78486818 510 + 160039680 CACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTG---AAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgt
s HiC_scaffold_1 171109278 510 + 233722169 cagtgtgaattctctgaTGTTCAACAAGCAGTGAGTTTCGACTAAAGCTTTTCTTGCATTTGGTACAATGATAGGGCTTTtcaccagtgtgagttctttgaTGCTCAATAAGGTGTGACTTCCaactgaaggctttcccacagtCACTACATTTATGAGGTTTCTCACCTGTGTGAATCCTCTGATGTTTAACAAGGCTCCTTCTCTGACTGAAGCTCTGTTTGCACTGATTACACTGATAGGGCCTTTCTCCAGTGTGGATTCTCTGATGTCTAATAAGAGTAGAGCTCACACTAAAGGTTTTTCCACAGTAATTACACTCATAGGGcctctcaccagtgtgaattctctgaTGTTCAATAACAAATGAACTACGACTAAAGCTTTTCCCACATTCATTGCACTGAAAGGGCTTCTCACCAGTATGAACCCTTTGATG---TTGAATGAAATGGGCCTTCCGAACAAAACccttcccacattcttcacatttaTGGCATTTCTCTTCTGTGT

a score=23501
s chr3            78486821 1015 + 160039680 TGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTG----------------------------------------TCTTTGGAAGTGTGAGGC--------------------------------------------CTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTG--TGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTG---------AAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTT--GCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTTTGTTG
s HiC_scaffold_1 171108441 1108 + 233722169 TATGGATCTTCTGGTGGTTAACAAGGCTGCGTTGTTGACTGAAACTTTTGTTACATTTCTCACACTTATAAGGTTTCTCTCCTGTATGTATTCTCTGATGCTGAATAAGACCTGAATTTCGGCTAAAGGCCTTTCCACATTCCTCACACTTATGAGGCTTATTACCTGTGTGAACACCTTGATGTCGGATAAGATTACAAAGTTGACTAAAACTTTTGCCACACTGTCTGCATAGATAAGGTCTCTCACCAGTGTGGATTCTCTGATGTTCAATAAGAAATGAGCTTCGACTGAAGCTTTTCCCACAAACAGTacataggtagggcttttcacCAGTATGGATTCTTTGATGTTGTACAAGGTGAGCACTAACACTAAAAGTTTTTCCACATTCATCACATTTGTAAGATTTTTCCTTAGGGTAGACTTCTTGCTGTATAATGAGATTGCAATTGGGATCAAAACTTTCTTtagtttcactgtatgaataaATCTTCTCCCTAGTGTGGATCCTTTGATGCTGAATAAGACCTGAGCTTCTACTGAAGGCTTTTCCACATTCCTCACATTTATGAGGTTTGTCTCCTGTGTGAATTCGTTGATGACGAGTGAGGTTGCAAAGTTGACTGAAACTTTTCCCACACTCTTTGCATTGATAAGGTCGTTCACCAGTATGGATCCTCTGATGTTCAATAAGGAATGAACTCCGACTGAAGCTTTTTCCACACTCAACGCAAAGaaaaggtttctcaccagtgtgaattttttGGTGTTGTATAAGATATG--TACTTAACctaaaggctttcccacattccccACATTTGTGGGGTctttccccagtgtgaattctctgaTGTTCAACAAGCAGTGAGTTTCGACTAAAGCTTTTCTTGCATTTGGTACAATGATAGGGCTTTtcaccagtgtgagttctttgaTGCTCAATAAGGTGTGACTTCCaactgaaggctttcccacagtCACTACATTTATGAGGTTTCTCACCTGTGTGAATCCTCTGAT--GTTTAACAAGGCTCCTTCTCTGACTGAAGCTCTGTTTGCACTGATTACACTGATAGGGCCTTTCTCCAGTGTGGATTCTCTGATG

a score=23312
s chr3            78486821 852 + 160039680 TGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTG--TGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCT-------GAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCT
s HiC_scaffold_1 171108945 852 + 233722169 TGTGGATCCTTTGATGCTGAATAAGACCTGAGCTTCTACTGAAGGCTTTTCCACATTCCTCACATTTATGAGGTTTGTCTCCTGTGTGAATTCGTTGATGACGAGTGAGGTTGCAAAGTTGACTGAAACTTTTCCCACACTCTTTGCATTGATAAGGTCGTTCACCAGTATGGATCCTCTGATGTTCAATAAGGAATGAACTCCGACTGAAGCTTTTTCCACACTCAACGCAAAGaaaaggtttctcaccagtgtgaattttttGGTGTTGTATAAGATATGTACTTAACctaaaggctttcccacattccccACATTTGTGGGGTctttccccagtgtgaattctctgaTGTTCAACAAGCAGTGAGTTTCGACTAAAGCTTTTCTTGCATTTGGTACAATGATAGGGCTTTtcaccagtgtgagttctttgaTGCTCAATAAGGTGTGACTTCCaactgaaggctttcccacagtCACTACATTTATGAGGTTTCTCACCTGTGTGAATCCTCTGATGTTTAACAAGGCTCCTTCTCTGACTGAAGCTCTGTTTGCACTGATTACACTGATAGGGCCTTTCTCCAGTGTGGATTCTCTGATGTCTAATAAGAGTAGAGCTCACACTAAAGGTTTTTCCACAGTAATTACACTCATAGGGcctctcaccagtgtgaattctctgaTGTTCAATAACAAATG--AACTACGACTAAAGCTTTTCCCACATTCATTGCACTGAAAGGGCTTCTCACCAGTATGAAC----CCTTTGATGTTGAA---TGAAATGGGCCTTCCGAACAAAACccttcccacattcttcacatttaTGGCATTTCTCTTCTGTGTCTGTTCTCT

a score=23032
s chr3            78486821  998 + 160039680 TGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACA---------------------------------------CTGCTG---------------------------------------------acacgtgtagggt------------------------------------------------------------------------------------ttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAA--------CTTTG--TGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGAAG-------ACGA--GAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGT-TAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCT
s HiC_scaffold_1 171108609 1173 + 233722169 TGTGAACACCTTGATGTCGGATAAGATTACAAAGTTGACTAAAACTTTTGCCACACTGTCTGCATAGATAAGGTCTCTCACCAGTGTGGATTCTCTGATGTTCAATAAGAAATGAGCTTCGACTGAAGCTTTTCCCACAAACAGTacataggtagggcttttcacCAGTATGGATTCTTTGATGTTGTACAAGGTGAGCACTAACACTAAAAGTTTTTCCACATTCATCACATTTGTAAGATTTTTCCTTAGGGTAGACTTCTTGCTGTATAATGAGATTGCAATTGGGATCAAAACTTTCTTtagtttcactgtatgaataaATCTTCTCCCTAGTGTGGATCCTTTGATGCTGAATAAGACCTGAGCTTCTACTGAAGGCTTTTCCACATTCCTCACATTTATGAGGTTTGTCTCCTGTGTGAATTCGTTGATGACGAGTGAGGTTGCAAAGTTGACTGAAACTTTTCCCACACTCTTTGCATTGATAAGGTCGTTCACCAGTATGGATCCTCTGATGTTCAATAAGGAATGAACTCCGACTGAAGCTTTTTCCACACTCAACGCAAAGaaaaggtttctcaccagtgtgaattttttGGTGTTGTATAAGATATGTACTTAACctaaaggctttcccacattccccACATTTGTGGGGTctttccccagtgtgaattctctgaTGTTCAACAAGCAGTGAGTTTCGACTAAAGCTTTTCTTGCATTTGGTACAATGATAGGGCTTTtcaccagtgtgagttctttgaTGCTCAATAAGGTGTGACTTCCaactgaaggctttcccacagtCACTACATTTATGAGGTTTCTCACCTGTGTGAATCCTCT----------GATGTTTAACAAGGCTCCTTCTCTGACTGAAGCTCTGTTTGCACTGATTACACTGATAGGGCCTTTCTCCAGTGTGGATTCTCTGATGTCTAATAAGAGTAGAGCTCACACTAAAGGTTTTTCCACAGTAATTACACTCATAGGGcctctcaccagtgtgaattctctgaTGTTCAATAACAAATGAACTACGACTAAAGCTTTTCCCACATTCATTGCACTGAAAGGGCTTCTCACCAGTATGAACCCTTTGATGTTGAATGAA-ATGGGCCTTCCGAACAAAACccttcccacattcttcacat--ttaTGGCATTTCTCTT

a score=21482
s chr3            78486821 751 + 160039680 TGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGT-GAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaat-actaagccc----tgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTG-AAGTGAAACCCTTCCcacactcttcacatttatatggcttc----tctc--------------------ctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctc---tcatgGGCCTGG-AGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTC
s HiC_scaffold_1 125439536 775 + 233722169 TGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTG-CTGAGTGAGCGTGGAGAAGTCGCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCC-----GAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGG-TTGGCCAGGTTGGACCTGCGCACGAAGCCCTTCCCGCACTCCCCGCAGGCAAAAGGCCGCAGCGCCTCTGCGCCCGCACCGCTGGCCGCTGCGTGTGCACGCCGGTGGCTGAGCAGGTGTGAGCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTGCAGGCGGCGGTGCTTGAGCAGGTCTGCGCGCCAGCTGAAGCTCTTGCCGCAGTCCGCACACAGGTTGGGCCGCTCGCCTGTGTGCAGGCGCAGGTGGTTGGTCAGGTAGGTGTTGCGAC----TGAAGCCCTTGCCGCACTCCCCACAGCGGAAAGGCTTCTC

a score=6875
s chr3            78486822 246 + 160039680 GTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctc
s HiC_scaffold_1 125440065 246 + 233722169 GTGTGCACGCCGGTGGCTGAGCAGGTGTGAGCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTGCAGGCGGCGGTGCTTGAGCAGGTCTGCGCGCCAGCTGAAGCTCTTGCCGCAGTCCGCACACAGGTTGGGCCGCTCGCCTGTGTGCAGGCGCAGGTGGTTGGTCAGGTAGGTGTTGCGACTGAAGCCCTTGCCGCACTCCCCACAGCGGAAAGGCTTCTC

a score=20273
s chr3            78486906 827 + 160039680 GTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatg--gactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttc----tctc--------------------ctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTG--TGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGC
s HiC_scaffold_1 125439453 860 + 233722169 GTGTAACTTCTGGTGCTGTGCGAGGTGCGTTTTGTAGCGGAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGAAGTC--GCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGGTTGGCCAGGTTGGACCTGCGCACGAAGCCCTTCCCGCACTCCCCGCAGGCAAAAGGCCGCAGCGCCTCTGCGCCCGCACCGCTGGCCGCTGCGTGTGCACGCCGGTGGCTGAGCAGGTGTGA--GCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTGCAGGCGGCGGTGCTTGAGCAGGTCTGCGCGCCAGCTGAAGCTCTTGCCGCAGTCCGCACACAGGTTGGGCCGCTCGCCTGTGTGCAGGCGCAGGTGGTTGGTCAGGTAGGTGTTGCGACTGAAGCCCTTGCCGCACTCCCCACAGCGGAAAGGCTTCTCGC

a score=20751
s chr3            78486978 1074 + 160039680 tttctctcctgtgtggaccctctggtgaatactaagccctgtgct-ctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaa-gctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGA---GGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTG---------AAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGT-TAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTTTGTTGAATGGGGGTGCCCTCATGTGTACTACGTACAGGGGACTTTTCCCCTACTAGCACAGGCTGATGAAGTTCGTGATTGGGTCTGTCAGTCAAGGCTTCTTGGCCCTTGCTGCATTGGTAGACCCTCCTTTCTATGTAAA---CATGATGCTGGGTGCTGGGTGACACTGGAAAAATGACTTTGCCACAGTCACCACTGCTGTGGGCTTTGTCTCTTTTATG
s HiC_scaffold_1 171108430 1023 + 233722169 TTTGACCTCTATATGGATCTTCTGGTGGTTAACAAGGC-TGCGTTGTTGACTGAAACTTTTGTTACATTTCTCACACTTATAAGGTTTCTCTCCTGTATGTATTCTCTGATGCTGAATAAGACCTGAATTTCGGCTAAAGGCCTTTCCACATTCCTCACACTTATGAGGCTTATTACCTGTGTGAACACCTTGATGTCGGATAAGATTACAAAGTTGACTAAAACTTTTGCCACACTGTCTGCATAGATAAGGTCTCTCACCAGTGTGGATTCTCTGATGTTCAATAAGAAATGAGCTTCGACTGAAGCTTTTCCCACAAACAGTacataggtagggcttttcacCAGTATGGATTCTTTGATG-TTGTACAAGGTGAGCACTAACACTAAAAGTTTTTCCACATTCATCACATTTGTAAGATTTTTCCTTAGGGTAGACTTCTTGCTGTATAATGAGATTGCAATTGGGATCAAAACTTTCTTtagtttcactgtatgaataaATCTTCTCCCTAGTGTGGATCCTTTGATG---CTGAATAAGACCTGAGCTTCTACTGAAGGCTTTTCCACATTCCTCACATTTATGAGGTTTGTCTCCTGTGTGAATTCGTTGATGACGAGTGAGGTTGCAAAGTTGACTGAAACTTTTCCCACACTCTTTGCATTGATAAGGTCGTTCACCAGTATGGATCCTCTGATGTTCAATAAGGAATGAACTCCGACTGAAGCTTTTTCCACACTCAACGCAAAGaaaaggtttctcaccagtgtgaattttttGGTGTTGTAT-AAGATATGTACTTAACctaaaggctttcccacattccccACATTTGTGGGGTctttccccagtgtgaattctctgaTG------------------------------------------TTCAACAAGCA-------GTGAGTTTCG--------------ACTAAAGCTTTTCTTGCATTTGGTACAATGATAGGGCTTTtcaccagtgtgagttctttgaTGCTCAATAAGGTGTGACTTCCaactgaaggctttcccacagtCACTACATTTATGAGGTTTCTCACCTGTGTG

a score=18555
s chr3            78486990 803 + 160039680 gtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatg-------aGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCT------TCTCTTCA------------------GTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCA---------TCCTCTGAAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTC---TGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACT
s HiC_scaffold_1 125439453 836 + 233722169 GTGTAACTTCTGGTGCTGTGCGAGGTGCGTTTTGTAGCGGAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGA-----AGTC--GCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGGTTGGCCAGGTTGGACCTGCGCACGAAGCCCTTCCCGCACTCCCCGCAGGCAAAAGGCCGCAGCGCCTCTGCGCCCGCACCGCTGGCCGCTGCGTGTGCACGCCGGTGGCTGAGCAGGTGTGAGCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTGCAGGCGGCGGTGCTTGAGCAGGTCTGCGCGCCAGCTGAAGCTCTTGCCGCAGTCCGCACACAGGTTGGGCCGCTCGCCTGTGTGCAGGCGCAGGTGGTTGGTC---AGGTAGGTGTTGCGACTGAAGCCCTTGCCGCACT

a score=15489
s chr3            78487120 761 + 160039680 ttcccacagctg-tcgcactgataaggcttttc-------ccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggagg---ttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTC---TGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTT---TGTTGAATGGGG------------------GTGCCCTCATGTGTACTACGTACAGGGGACTTTTCCCC
s HiC_scaffold_1 160379700 787 + 233722169 TTTCCACAACTGATTTCATTCATGAGTTTTTTCAATGAGTTTTCATGTGC-----TTGATAAGT-------GATGCATTTTGTTTGAAGGTtttcccacattcattacattcatagggtttctctcctgtgtgggATCTCTGATGTATAACGAGTTGTGACATTGCATTGAAAGTTTTTCCACATTCATTGCATTCATACGGTTTCTCAcctgtgtgagttctttcatgtacaaTGAGATGTGACTTTtggctaaaagctttcccacattcattacattcaTATGGTTTCTCCCCGGTATGAACTCTCTGATGT-TGAGTAAGACCTTCAATTTGT--TTAAAGGCCTTCCCACACTGATTACATTCGAAGGGATTTTCACCAGTATGGGTTCTCATATGGTAAGTAAGAGATGAGCTATGTCCAAAGGCTTTTCCACATTCATCACATTTATAAGGTTTCTCTTTTGTATGAGTTCTTTGATGTATAATGAGGTGTGACTTTTTGCTGAATGTTTTCCCACACTCATCACATTCGAAAGGTTTCTCACCTGTATGAATTCGCATATGTTTTGTCAGGGATGAACTATACTTAAAACCTTTGCCACATTCATTACATTCATATGGTATTTCACCTGTATGAGTTCTCACATGTTCAGT---AAGAGATGAGTTATACCTAAAAGAttttccacattccttacattcatAAGGCTTTTCACCTGTATGAGATCTCACATGTTGGATAAGGTTTGAGCTGTGTCTAAAAGTTTTTCCACATTCAGTACATTCATAGGGCTTttcccc

a score=14661
s chr3            78487197 627 + 160039680 GAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTC---------------------TTGCCCGTT---TGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATG
s HiC_scaffold_1 125439492 660 + 233722169 GAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGAAGTCGCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGGTTGGCCAGGTTGGACCTGCGCACGAAGCCCTTCCCGCACTCCCCGCAGGCAAAAGGCCGCAGCGCCTCTGCGCCCGCACCGCTGGCCGCTGCGTGTGCACGCCGGTGGCTGAGCAGGTGTGAGCTGAGGCTGAAGGCCTCGCCGCACTCAGGGCACGGGTAGGGCTTCTCCCCCGTGTG

a score=12843
s chr3            78487281 512 + 160039680 GAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGT-------TAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACT
s HiC_scaffold_1 125439492 521 + 233722169 GAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGAAGTCGCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATGCTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGGTTGGCCAGGTTGGACCTGCGCA-------CGAAGCCCTTCCCGCACT

a score=11557
s chr3            78487297 550 + 160039680 tcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttc-ccacactcgtcacacttgtaaggtttct---------cctcagtgtggactctctggtgggtgtggaggttcgagctgcag-ctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGAC---AACTTTG--TGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTC-GCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTG---------AAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTTTGTTG---AATGGGGGTGC
s HiC_scaffold_1 171108322 569 + 233722169 TCTCTACATTTAC--TGCATCCATGCCGTATGCAACTTTTGATG-TTGAATAAGGGAAAAATGGCAATTAAATGCTTCACCACAAGCATCACATTCATGAGTTTCTTGTGTTTTGACCTCTATATGGATCTTCTGGTGGTTAACAAGGCT-GCGTTGTTGACTGAAACTTTTGTTACATTTCTCACACTTATAAGGTTTCTCTCCTGTATGTATTCTCTGATG---CTGAA--TAAGACCTGAATTTCGGCTAAAGGCCTTTCCACATTCCTCACACTTATGAGGCTTATTACCTGTGTGAACACCTTGATGTCGGATAAGATTACAAAGTTGACTAAAACTTTTGCCACA-CTGTCTGCATAGATAAGGTCTCTCACCAGTGTGGATTCTCTGATGTTCAATAAGAAATGAGCTTCGACTGAAGCTTTTCCCACAAACAGTacataggtagggcttttcacCAGTATGGATTCTTTGATGTTGTACAAGGTGAGCACTAACACTAAAAGTTTTTCCACATTCATCACATTTGTAAGATTTTTCCTTAGGGTAGACTTCTTGCTGTATAATGAGATTGC

a score=9594
s chr3            78487410 426 + 160039680 gtggactctctggtgggtgtg-gaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCC---------TCTGAAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTTTGTTG
s HiC_scaffold_1 125439453 435 + 233722169 GTGTAACTTCTGGTGC-TGTGCGAGGTGCGTTTTGTAGCGGAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGAAGTCGCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATG

a score=8698
s chr3            78487443 619 + 160039680 gcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTG--TGACAACTTTG----------TGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTG---------AAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTC-GCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTTTGTTG---------------------AATGGGGGTGCCCTCATGTGTACTACGTACAGGGGACTTTTCCCCTACTAGCACAGGC-----------TGATGAAGTTCGTGATTGGGTCTGTCAGTCAAGGC-TTCTTGGCCCTTGCTGCATTGGTAGACCCTCCTTTCTATGTAAACA---TGATGCTGGGTGCTGGGTGACACTGGAAAAATGACTTTGCCACAGTCACCACTGCTGTGGGCTTTGTCTCTTTTATGCAGTGCGTTG
s HiC_scaffold_1 171108382 660 + 233722169 GCAATTAAATGCTTCACCACAAGCATCACATTCATGAG---TTTCTTGTGTTTTGACCTCTATATGGATCTTCTGGTGGTTAACAAGGCTGCGTTGTTGACTGAAACTTTTGTTACATTTCTCACACTTATAAGGTTTCTCTCCTGTATGTATTCTCTGATGCTGAATAAGACCTGAATTTCGGCTAAAGGCCTTTCCACATTCCTCACACTTATGAGGCTTATTACCTGTGTGAACACCTTGATGTCGGATAAGATTACAAAGTTGACTAAAACTTTTGCCACA-CTGTCTGCATAGATAAGGTCTCTCACCAGTGTGGATTCTCTGATGTTCAATAAGAAATGAGCTTCGACTGAAGCTTTTCCCACAAACAGTacataggtagggcttttcacCAGTATGGATTCTTTGATGTTGTACAAGGTGAGCACTAACACTAAAAGTTTTTCCACATTCATCACATTTGTAAGATTTTTCC----TTAGGGTAGACTTCTTGCTGTATAATGAGATT-GCAATTGGG-------ATCAAAACTTTCTTtagtttcactgtatgaataaATCTTCTCCCTAGTGTGGATCCTTTGATGCTGAATAAGACCTGAGCTTCTACTGAAGGCTTTTCCACATTCCTCACATTTATGAGGTTTGTCTCCTGTGTG-AATTCGTTG

a score=9481
s chr3            78487515 472 + 160039680 GAGGTGTGACAACTTTGT----GAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGAAGACGA--GAGCTCTGA-------CTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACAC-TTTGT---TGAATGGGGGTGCCCTCATG-------------TGTACT----ACGTACAGGGGACTTTTCCCCTACTAGCACAGGCTGATGAAGTTCGTGATTGGGTCT----GTCAGTCAAGGC-TTCTTGGCCCTTGCTGCATTGGTAGACCCTCCTTTCTATGTAAACATGATGCTGGGTG
s HiC_scaffold_1 125439474 502 + 233722169 GAGGTGCG----TTTTGTAGCGGAAGTCTTTGCCACAACCCGTACACTTGTGTGGCTTGTTGCCCGTGTGGATGCGGCGGTGGCGGATCAGGTGTGAGCTCTGAATGAAGCTCTTTCCGCACTCGATGCACGTGTAGGGTTTCTCACCCGTGTGGGTGCGCTGGTGCTGAGTGAGCGTGGAGAAGTCGCTAAAGCACTTTTCGCACTGGCCACAGCGGAAGGGCTTCTCGCCTGTGTGCACCCGCAAGTGGTTCACCAGGTGCGAATTGCGCCCGAAGGCCTTGCCACACTCGCGACACACGTAAGGCCGCTCTCCCGAATGCGTGCGCTTGTGCGTGAACAGGTGCGAGCTCACGCTGAAGGTCTCCCCGCACTCAGAGCACATGTAGGGCTTTTCACCTGTGTGCACACGCTGATG-----CTTCACCAGATCTGAGCGCCAGCTGAAGCGCTTCCCGCACTCGCTGCAGCCGTGCGGCTTCTCCCCGGTGTGGATGCGCTGGTGGTTG

a score=4303
s chr3           78487533 135 + 160039680 GAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCAT
s HiC_scaffold_1 99640198 135 + 233722169 GAAACCCTTGCCACACAGGTCACAGCCAAAGGGCTTGAAGCCTGTATGCTTGCGGCTGTGCGTGATGAGGTTGGAGCTCTGGCTGAATGCCTTGCCACACACCTGGCACTTGTGGGGCTTCTCACCTGTGGGAat

a score=6158
s chr3            78588418 271 + 160039680 AAGCCAAATGTCTCAGTTCTCTGCTATAGTGTGGATATGGTTCAAATATGTTCCCCAGAGTTTTCTGTATTGGAATCTTGATT----GCATTGTGAAGATTCTTATAGATATTAGAAATT----AAGAAGTAAGG-TTAGTATGAGATAATTAAATCACCAAGGCAACTTCCCACAGAAGACATTAATGTACTTCTTGTGGGACCCTGACTAGCTCCCAT--GAATGAATTGTCCCAGAAAGAG--AACTTGCAAATTCCCAGGCTCTATCTTCCTGTCTTTCT
s HiC_scaffold_1 163554532 274 + 233722169 AAGTCAGCTGTTTTGAAACCATACTATGGTTTGGATATGGTTTGAGTATGTTCCCCAAAGGTTCATGTGCTGGAAGCCTGACCCTCAGTATGGCACAGCT-----GAGGGGGTGAAACTTTTCAAAGAAATGGGGCTCAGTGGAAGCTGGTTAGGTCGCTGGGAGAGCTGCCCTCAAAAGAGATTAATGTAGCTTTCA-GGGATCCCCGTTAATTCCCACTAAAATGGGTTGTTATAAAAAGAGCAAGCTTG----GTCCCTGAATCAATcaatccttctttct

a score=8003
s chr3            78668883 146 + 160039680 AAAAAACATAGAGTTCCTCCTCCTGGCAATGGACAAAAAGACACCTTGTTGGTGATATTATTCTTACACCAGTTAGGGACAGGGCAGATGGCAATCCTATGGTCATCCTACCTTGATGCTTGCCTTGATGGCCAAAGCTGTTTTAt
s HiC_scaffold_1 195809913 142 + 233722169 aaaaagcaaaaag---acccCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCTG-TTTGGTGGCCAGAGCTGTTTCAT

a score=14881
s chr3           78675196 941 + 160039680 TATGTGATCATCATCCATGCTATAGAACATAGAGACATTATAAAAGAAAAAAGTGTAGACACATCTCAAGATGACCT--ATGTCTTGACTGCTGCTCATAGTATTG-TCAAATTTAAGCTGGCATCTCCAAGA---------CCTGTGAGTGTG-TCTTCTAGCTTACACGGTGGGTATAAAGCAATTAGCAGTTTCTGTGAGTCATCTGATAGCCGGAAATGATAGTAGGAAATTATTAAGGGAAACAGCAGCTACATAACAAAAATGGATGGTagcaaggcatggtggctcaggtactttcaggcttttgggggcaaagaagaagtactgagagttcaagaacagcctaggctatgtaatcattccagatgagtaatggcatacagcgtgagaccctttctcaaaaCATACATACCTTCTGAAAAGAAAGAAAATTGGCGACAACTCTAACATAGCAGCATTTGTGTTGATTTCT---TGAGCCATTTGTGCCTTGCTGAGACCAAGTCCTGTGATGCCTTTATGAAAGTGATAGAAAGCCACTTGAGAAGATGGCAGTGTCAGATGATACATACTACTGGAAGCTTTGGATTGAATTCCACTTCCACCTCAGCCAAAAGACACACTTTTGCTTCTATCCCTCCACAATGCCTATAGCAT--ATATTATTGACACCATTCCTGTAAGATGAGTAGAGATTGGCTTTCTCAAATTGGGCATGGCAATTATCTTTGCTCTAGTCAGTGTCACCAGTATGATAAGGTTTTTTGAAACACAATGTGAGACTTTGAAT-----TCTTCCTGGGACCCATGTGAGTTTCAATGTCAAGAATG-GCCTATCAAAGGGGTT----------TGCCAAACCTTACTAGTGAT-GCAAAAATGACCTA-TGACAGAAGGAGCTGG-TTCAGTACTCAGATAATTGTCCTAAACCATCAAGGCCAG----TGCTAGAAATGCCAGTGTGCT
s HiC_scaffold_1 22687841 799 + 233722169 TGTGTGACTATCATTGATTCCCCTGGATATAGagacttta--------aaaaatg-----acatCCCAGGTTGACTTTGCTTTCCTGATTGCTACCACTGGTATTGGTAAAATTGAAGCTGGTATCTCCAAGAATGGACAGACTCATGAGCACGACCTTCTTGCTTATACGCTGAGTGTGGAACAATTAATTGTTGGTGT-----------------------------------------------------TTACA------AAGTGGTTTCTACTGAGGCAC--------------------------------------------------------------------CTATGG-------CCAGAAGATTGATAAGAAAG----------------TCAGCACCTACATT-------------AAGAAAATCATCTACAATTCCGGAATGGTGTTTTTTGTACCAGTTTCTGGTTGGAATGCTGACAACATGCTGGAGGCAAGTGCTAATATGTCTTAGTTCAAGGGAAAAAAAGTCATTTGTACAGACAGCAATACCAGAGTAATGACACTGCTCAAAGCTTTGGATTGCATCCTTCCTCCCACTCACACAACTGACACGGCTTTGCAACTGCCCTTCCAAGATGTCTGCAAAATTGGTGAAATTGGTACCATTCCT-TGGGCCTAGTAGAGACTGGTGTTCTCAAATC-----TGGTGGCCACTTGCACTCTAGTCAGTGTCACAGCTGATGGAAAGTCTGTTGAAATGGATCATGAAGCTCTGAGTGAAGCTCTTCCTGGGGACAGTGTGGATTTCAACATCAAGAACGTTTCTGTCAAAGATGTTATGTTCATCGTGGCAAA-CTTGCTGGAGACAACAATAATGACCCACCAATGGAAGCAGCTGGTTTCACTACTCAGTTGATTATCCTGATCCAACCAGGCCAGTTATTGCTGGTTATGCCCCTGTACT

a score=5566
s chr3            78675612 212 + 160039680 AAGAAAATTGGCGACAACTCTAACATAGCAGCATTTGTGTTGATTTC---TTGAGCCATTTGTGCCTTGCTGAGACCAAGTCCTGTGATGCCTTTATGAAAGTGATAGAAAGCCACTTGAGAAGATGGCAGTGTCAGATGATACATACTACTGGAAGCTTTGGATTGAATTCCACTTCCACCTCAGCCAAAAGACACACTTTTGCTTCTATCCCT
s HiC_scaffold_1 109791249 215 + 233722169 AAGAAAATTGGTTACAGCCTGGACACAGTGGCTTTTGTGCCAACTTCCAGTTGGAATGATGACAACATACTGGAACAAAGTGCTAGCATATCTTGGTTTAAAGGATGGAAATACACTCATAAGGATGGCAATGCCAGTGGAACCACACTGCTTGAAGCTTTGAATTTCATCTTACTACACATTTGCCCAACTGACAAGCCCTAGCACATGCCCCT

a score=9678
s chr3           78864874 261 + 160039680 CTTAGACTTATTTTTTAATACAGGACTCACACTTAGAAGTGGATGGTCTTCAGAGAGAAAGGCTTACATCTCTTGATAATCTGTTCCTTACGTTTTTCTTTGCCTTCCT-----------------------------------------------------------------------------------------------TCATTCTCTTGGCCAAGAGTTTGGCATATTGT-------CCTCCACGTTTTTCTTTCTGTAGTGTTTTTTTCAGAGCAATATATCATCGCTTGTGTCACAGGACATGGGAAATAGCAAGACACGGAATCTTGGGTACTTTGGTCCTGGGAGTCTTACCT
s HiC_scaffold_1 79513394 361 + 233722169 CTTAAGCATTTTATTTCTGACTGGACTCAGACTTAGAAGTAGAAGCTCT-CAGAGAGGAAAGCCTACGTCTCTTGGCAATTTGTTCCTGGCGTTTTTCTTTAGCTTCCTAAAAAACAGAAGTACAGAAGAAGTCAGACTTTTATTCCAGTGAAAACAGCAAATTAGCCATTCTGGTTTCATGGCCTCCCTTATCTCACTCACCTTCATTCTCTTGGCAAGAAGCTTAGCATATTCTGCAGcctcctctttgtttttcttagtaCGCTGCTTCTT-CAGAGCAATACGGCGGCGCTTGTGTTGGAGGACACGCGGAGTAACAAGACGCTGAATCTTAGGGGCTTTAGTCCTGGGTTTCTTACCT

a score=10814
s chr3           78865127 351 + 160039680 TCTTACCTTCTCTATTTAAGGGCTTTCTGACAATGTACTGATAGACATCATCTTCTATATAAAGACTGAAGAGCTTTTAGATTCTGCTGGCTCTTTGGGGCCTCA-----------ACAGTAGCATCTGCCAGTTCACAGATACCTT--------------------------------------------------------------------------------------------------------------------------------------ATCTGT------------------------------------------CTTTTTT-------ACCAAGTTGAAATCACTTGGATTGGCATCCACAATGTGTCCACAAACAGACTTGTGCCCCTTGTTCCTCCAGTGTTCCTTTGTCTATAACAAGAATGCCCCTTCCTCAGCACAAGACACATTCTGCCATAGGTCAAGACTGCTAGGTGCTTAGGTAAACCCCCTTTTGTTTTCCTCATTACTGATTCGGACTACAAACCTCT
s HiC_scaffold_1 79514898 542 + 233722169 TTTTACCTTCTTTGTTTAAGGGCTTCCTGACAACATATTGGCGAACATCATCTTCTTTAGAGAGATTGAAAAGTTTGCGGATTCTGCTTGCTCTTTTGGGCCCCAGGCGCCGAGGCACAGTAGTATCAGTCAATCCAGGAATATCTTTCTCTCCTTAGAAGAGACAAATGTAAACAGAAGTATTTCAGTTCAGTAATTTCCTTTGTAACATTGAAATGATCATTTACAAGGGTACTTGTAAAATACACTGGTTAATATGCAAACACCGTAAAGGAAAAAACACCTGTAAGTCATCAACAAAAACTAAACGTGAAGAGCATAAACCTCAcctttttttacaataaccaAGTTGAGAACGCTCAGATTGGCATCCACAATGCAACCTCGGACAGATTTACG--CTTTCTCTCTCCGGTTCTCCTTGGTCTATAACAGGAATGCCCCTTGCTCAGTAGCAAGCGAACTCGGCCATGAGTCAAGACGCCTTGCTTCATAGGGAAA-CCTTGCTTGTCGTTCCCACCACTGATCCGGACCACATAACCCT

a score=3814
s chr3           78865476  91 + 160039680 CTCCCATTCTCCACACAGAG---------CTATTTCTGTGGCTGTGTGCTTCACACAGAAAGCTCAAAGTTTGTGTTCTTCATTCACTTCAATT-GTTTCT
s HiC_scaffold_1 79515842 101 + 233722169 CTTCCACTCTTCTCCTAGAGAGTCAGCAGCAACTTCTGTGGCCATACGCTTCTCATAGAACGTACGAAGTTTACGTTCATCATCCACCTCAATGAGTTTCT

a score=6481
s chr3           78888269 247 + 160039680 AGGATCTCCTCCCTGGAATTTGATCATCA-GTCCTTGACCAGATGACCTAGCTTGGCGACAAGGATCAACTCCATATCTTTGGCTTTACTTCCATGAGCCCCA-------------------------------------CACTAGGACCCCCAAATCATGGGGCCCCT----------AGTCCTCTGTCTGC-CTGGCGTCATCCACCATTTGGTGTTTTCCCAAAGAAGAAGTAAGAACTTCAATGTTTTAAGTATTTTCTCTAGCTTCACCCTTTTATTTGCTGTTACTTTGT
s HiC_scaffold_1 23606669 286 + 233722169 AAAACTTTCCTCCAGGGACTTGATCTTCATGTCCTTGACCAGTCAGTGCAGCTTGATGACAGAAATCCACTCCTTGTCCTCGGCCTTACCACCACAAGCTCCACGGCCTCGAAGGCCACTTCAGAAGCCTCCACAGAAGCCACTGCGGCCTCCCATGCATGGGCCCCCTGGAACCTCCCGGTCCTACTGCTGCAATGGCGTCATCCTCCATCTGGTGTTTCCTCAAGGAAGAag----------actctttaaatttttatctcatgttttatttcattagtgCGTCTTATTTAGT

a score=4883
s chr3           78888277 93 + 160039680 CTCCCTGGAATTTGATCATCA-GTCCTTGACCAGATGACCTAGCTTGGCGACAAGGATCAACTCCATATCTTTGGCTTTACTTCCATGAGCCCC
s HiC_scaffold_1  1550628 94 + 233722169 CTTCCAGGGACTTGATCTTCATGCCCTTGACTAGCCAGCTCAGCTTGGTGACAGGAATCTACTCCGTGTCCTTGGCCTTACCGCCACGAGCTCC

a score=16278
s chr3           78891791 688 + 160039680 AACTGAGATGGTCAttctttttttttttttttttttttttttAACTTTATCT---GCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTC------------TGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGAT-------GTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCA---AAAATTCAA-------------CACTCttttttttttttttt------------------------------------------------------------------------------------------------------------ttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGA-----------------------------------CATCCTTC---------AGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGCGAGATGGTCATTC--TTTAAA
s HiC_scaffold_1 84130579 841 + 233722169 AAtcagaatattcattttattcattcatttctatttatGTCAAATTTACTCTtatgcctatgtttc---------ttttttttatgccATGTATTTCTGTTTCTCAAGTTTCTTTTAAGATAGCCTTTTCATTGATGTAACTTTCTGTTCTG--TTAGGGGCAGTCTGTTCCTTTTCAGTAAAAGTCATCTTAATGTGGCAGAAA-AGCTCACATATAGGGTAAGTCAACCATGAGTTCTGTAAGTACAACAGTGAATTGTGGGTGTTTTGTCCCGTAGAAGATACCCAGTCTTCAGAGAACAGAGAATTTATATCTAAACTCTTAAGTTCAACAGTACTTTCTG--TTTTTAAGCCTGTACAGCCTTTCACTTTCACTCTCTCTAgttctccttctttctttgtttttttgagacaggatctcactatgtaattcacactggccttgaactcactacagtTCTCCtgtctctgagtgctgggattacaggtgtgcaccactacaccacTTCGGTAATCTTTTTGGGTCACTGTCCTTGGGTCTGGCACCT----CTGTTTAGCCTGGGCACAC-TACTAAA-----------ACTG--GAATGGCACACACTGCATTCCCATAATGAATAAATTGTGTATTGtgaacatgtgctaataaaaatgttattttaaaggcAAAGATACATG-TGGCTTTTCCAGTGTACATTTTCTTGCTGGCATAGGCAGTTTCACATGCATTCTTAGAGTGAACATGAAGGTTTGAATGTCTTGATTTGCatgattttgtgttgttttct-ggTCAAAAGTGCAGCAAACTTTTTTCACCGATCACCTTAGGCTGCTTACAGGAAGATGGAG-----CATTCATTTTAAA

a score=16296
s chr3           78891805 651 + 160039680 ttctttttttttttttttttttttttttAAC----TTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTC------------TGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGG----ATGTGTTGAATGACTAGAGAATCTAAG-TCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCAT--GGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAA
s HiC_scaffold_1 17368519 560 + 233722169 ttcttctgtttttcttcctcctcctccttcccccttttatgtacatttattttgcaCTGAATTTGTTCCTGTACCATAAGTCTTTGTt----------cttcagggatttttttttcctttgtgcagtttcctcttctgtgttaagaaccatttgtttttctgtagcaAGGACCATCTCCATGTGAT--------------------TTAATCTTACCATGAGCTCTGT-TGCCCACCAGCTCATCTTAGGAGT-TCATTCACCTGGTACAGTATGTTCAGTGACTGCAAAACTTAAGAGCTAAACTCTTAAGTTCAAGTTTACTGTGTG--TCTGTAAGCAC------------------------------------TGTATTGGGCCACCAACTCTGTGCCCAACCCCA----CAGTTTGGTCTGGGCACATT-------------------------------ACAGAATGTTACTGTAATGTGACACTTTTCAGATACTTGGTGAGTTGGTTGATACCCATA-CTTTTATCATATCCAGGCAGTTTCATGGAGATTCCTAAAGTGAACAAAAAGAT--------CTAGATTTGCATGCTTTTGTGGGGTTTTCTAAGCCAAATTAATAGAGAACCACTTTCACAGATCACGTCAGGCCATTTACAACAA

a score=23216
s chr3            78891815 645 + 160039680 ttttttttttttttttttAACTTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCT------------CTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAG--GGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCGAAT-GGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGC
s HiC_scaffold_1 148612894 619 + 233722169 TCTTctctacattttttaaactttatttgcaTTTGGTTTATACTTAGTCTATTCTCATGCTGTAAGTTCT-GTTTCTGTAGCTTCTCCTAGGATACCTTCTCCTTCTGCACAACTTCCTCTTCCAGGTTAGGAACCAGGCATTCCCT-TCAGTAAAGACCACCTTGCTGTGGGGGCTGAGGAGCTCAC-CATGGGTGAACCCAGCCCTGTGCTCTGGAAGTAC-TCAGGGCATCTTGGGTGCTTCGTTCACCTGGGTCCATCCAGTGGCCAGAGAGCCCACATTTAA-CTCTGCGGTTCAGCCTCCCTCTCTGCATTTT-AAGCA----------GAAGTCGGCACCATTT------------------GGGCCCCGTGCCTGTGCCCAACCCCG-CCACTG---GGCCTGAGCGCTGCTACCCACTCCAC-ACTGCAGTGTGGGAGAGGCACACACTGCTTCTCTAATGTGACACCCTTCAGACACCTGGGGACTTC-TAGACGTGCACACCCTTGCTGGCCTGAGCTGTCTCACGGGTGTTCTTAAAGTGAACACAAAGATTTGAACCTCTCGATTTGCATGATTTGGGGGCGTTCTCTGGATCAAGAGGGTAGCGAGCCATTTTCACAGGTCATC-CGGACCCCTGACCGGAAGAGC

a score=37102
s chr3            78891817 655 + 160039680 ttttttttttttttttAACTTT-ATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTT------------CTGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATT-ATACCGCC-GAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGCGAGATGGTCATT
s HiC_scaffold_1 209881278 641 + 233722169 ttttgagtttttttttaacttttattttcatttattttatgcttaatTTATTCCCATGctataatgttttgtttctttagtttcttctggGATATCTTTTTATTCTGTGCTACTTCCTCCTCTGGTTTAAGAACAATTGATTCCTTTTCAGTAAGGATCATCTCAGTGTGGCAGGGGGAGCTCATGTATGGGTTATTCTGGCCATGAGCTCTGTAAATACAGCAGTACATCTTGGGTGCTTTGTTCACCTGGATATGTTCAATGACCAGAGAATCTACATCTAAACCTTGAAGTTCAGCATTACTCTTTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTC---------------TTTTTGGGCCACCAACCCTGTGTCCAGC----CCCACTGTTTAGCCTGGGCACACCTACCATCTCCACCATTGGCAACGCCAGAATGGCACACAGTGCTTCTTTAATGGGACTTCCTTCAGGTACTTGGTGGCCTTTCAGATATGCATACCCTTGATGGCCTGGGTATTAAACATG--------AAGATGAACATGAAGATTTGAGCCTCTTGATTTGCATGATGTTGGGGGATTTTCTGCGGCAAGAG--TAGCAAACCATTCCCATAGGTAACCTCACGCTGCTTACAGTAGGTTTTAGAGAGTTATT

a score=21838
s chr3            78891825 635 + 160039680 ttttttttAACTTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGC
s HiC_scaffold_1 183761910 578 + 233722169 tcttttttacttttatttgcatGTCATTTATACTGAATTTATT-----TCCATGTATTATTATTCCTACAGTC-CTTTTGTGCAACTTc------ctctttttgtttaaaaatagctCATTCTATTTTGGTGAGGATCATCACCATGTAACAAGGGT-GCTTGTATAAGGGCTAATCTGACCATGAGT--------------GGCACATCAAGGGTAACTTGTTCACCTGGAAATATTCACCGAGCAGATAATCTATGTTTAAAC--------TCAGAATTACTGT--GCATTTTAAACTATATGTAACCAAAATTC--------------TTGCAATTTTTTATGGTCATCAGTCCTGTGACCTGAGC-----ATTGTTTGACCCAGGCACACCAACTGACTCCATCATTGCAACACCCAGTGGCAgccattgtttctttaaaatgacaTCTTTCAGCTACTTGGTGGTTTTTCAGATATGCACATCTTTGATGCTCTGGGCCGTGTCATAATTATT-TTATACTCATCAAGAGAATTTGGACCTCTTGATTTCCATGATGTTGTGGGGGTTTGTGCATTAAGTAAGTAGTGAGGCATTTTGACAGATCAGTTCAGGTTGCTTACAGGAGGAGC

a score=21143
s chr3           78891826 634 + 160039680 tttttttAACTTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTT---------CTGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAA-CCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGACATC-----CTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGG---------------------------------------GTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGC
s HiC_scaffold_1 94528502 638 + 233722169 tcttttttcttttgcttgcacttattttatgctgaatttattccc-----ataaatttttatttcttcagtttcttctgaGACATCTTTCTTATGTACAACTATCTCTTCAATTTAGGAACAGTTTGCCCCTTTTAATTAAGGGTCATGCCGGTGTTTGAAGGG---TTCATGCATGCAATAATCAGGCTACAGG----GCAAGGTCAGCAGTGCAT-TCAGGTGCTTTGTTCACCTGGATGTGCTCAATGAATGCAGAATCTCCATCTAAAATTCTAAAGTTCAGCATTATGCTCTGCATCTTTAGGTACATGTTGCAAAG-TCCAGCACT---------------GTTTTGGGGCCATTGACTCTGTGTCCAG----GTCAACTGTTTGGCCTGGGCACACTTCCCTCTTCCACTGTTCTAATGCTGAATGCCATACGTTACTTCTTTaaagtgatattttatatttcagataCTT-GCAACTTTGCCAATATGC----TCTTTTTGGCCTAGGGAGTTTCCCTTCCCCTccaccttctctcctttcccttccccactCCTCTCATTCTCTTAAAGTGATCATAAAAGTTTGAATCTCATGATTTGTATAATTCTGTGAAGTTCT--------AGAGAATAGCA----TTTTCCACAGGCCACTTTCAGCAGGTGACAGGAAGAGC

a score=27475
s chr3            78891831 648 + 160039680 ttAACTTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCT------------CTTCTGGCTTTGGAACGATCTGT--TCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCC-GAATGGCACACAT------------------------------------------------------------------------------------------------------------TGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGCGAGATGGTCATTCTTTAAA
s HiC_scaffold_1 184103855 722 + 233722169 TTACTTTTAGTTGCATTTTTTTTATGATTAACTTATTCCCATGCCgtaagtttttgtttcttc---------tgggatatctttttcttctgtgcaACTTTCTCCTCTGGTTTAGGAACAGTTTATAGTCCTTTTTAGTAAGCATCATCACAACATGGCAGGGGGAGCTCATACACATGTTAATCTGGCCAAGAGCTCGGT--GCCCAGTAGCGCACCTCGGATGCTTTGTTCACCTGGGTGTGTTCAATGACAAGAGAATCTACATCTAAACCCTTCAGTTTAGCATTACTCTCTGCATTTTTAAACATGTGCAGC-AAAATTCAGTGC-----------------TTTGTGGGCCACTGACCCTGTGCCCA---------ACTGTTTGCCTTGGGCACACCTACCAACTCCATCATTGTCATGCCAGAATGGCACACattggttttttgatttttttttttttttttttgtaccagggatcaaacttacaaccttgtgcttgccaggcaggcacctatgccactgaggtaaGTTCCTGGCCCCACACTGCTTTTTTAATGTGCCATCCTTCAGGTACTTGGTGGCCTTTTAGGTATACATACCCTTGATGCCCTGGGCAA-TTCCTGGGTATTcttaaaatatacacaaagaTTTGAGCCTCCTGATTTGCATGA----------TTTTCTGGGTTAAGAGAGTAATGAACCATTTTCACAAGTCACCTCAGGCCTCttacaggaagaggaagacagcTGCTGTCTTAA

a score=26781
s chr3           78891836 624 + 160039680 TTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCT------------CTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCA--CCTACTGACTTCACCATTATACCGCC-GAATGGCACACATTG-------------------------------------------------------------------------------------------------------------------------CTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTT--------------------------------------------------------------------------------------------------------------TCC-------------GGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCTCGGCAGGTGACCTCTCACTGCTTACAGGAAGAGC
s HiC_scaffold_1   441030 853 + 233722169 tttatttgcatttattttatgcttGATTTATTCCTGTGccataagtttttgttttttcagtttcttctgaggtatctttttcttttgtgcaacTTCATCTTCTGGTTTAGGTACAATTTGT-CCTTTTCAGTAAGGATCCCCTCACTGTGGCAGGCAGAGCTCATGTATGGGTAAATCCAGCCATGAGCTCTGTAAATATGGTGACTTGCCATGGGTGTTCTGTTCACCTGGGTATGTTCAATGGCCACAGAATGTACATCTAAACCCTTCAGTTCAGCAGTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTC---------------TTTTTGGGCCATTGACCCTTGGTCCAGC----ACCACTGTTTGGCCTGGGCACATCCCTACTAACTCCAGCATTGTAATGCTGGAATGGCACACAGTgcttctctcattctctctctctctctcttttggtggTATGGgggatgaactcacaacctcatgcttgcaggacagaggcaggcacttatgccactgagctaaatccctagcactgcacatttcttctttaatgtgaCATCCTTCAGATACATGACGGCCTTTTAGATGTGTGCACCCTCAATGGCTTGGGCGGTTTCATGggtgttcttttttaaatcttttttttttttttttttgtaccaaggattgaggATCTAATTCACGACctagctcttgccaggcaggtgcttatgctgctgagctaaatcctcagcctcttcAGGGGTGTTCTTAAAGTGAGCACAGAGATTTGAGCCTCTTGATTTGCATGA----------TTTTCTGGGTCAACAGAGCAGCAAACCATTTTCACAGGTCATTTCAAGCCACTTACAGGAAGAGC

a score=11551
s chr3           78891838 383 + 160039680 TATCTGCATTTATTTCA--TGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCT------------CTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTG----TTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCT
s HiC_scaffold_1 99138122 348 + 233722169 tatatacatatatataaaatgctaAACTTAgtct---------aatgttt--ttattcattttcttctgtgataCTTTTTTCTGCTGTGCAACTTCCTCTTCTGGTTTTGGAACAGTGTGTTCCGTTTCAGTAAGTATCATCTCAGTGTGGCA--GGGAGCTCATTTATGGCTTCATCTGACTCTGAGTATAGTGAG----------CATCTTGGAGGTTTTGTTCATTCACCTGGATATATTCAGGGACTACAGAATTGACATCTAAACTC--AAATTCAGTGTTA--CTCTGCATTTTTAAGTAT---CAGAGAAA--TCAGCACTC---------------TTTTTGGGTCACTGACCTTGTGTCTAACAT------CTGTTTGGCATAGATAGATCT

a score=15982
s chr3            78891849 577 + 160039680 ATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGC----GCACCTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCT
s HiC_scaffold_1 188077726 509 + 233722169 ATTTTATGCAGAATTTATTTATGTCTCAT------TGATTTCTTCA--TCCTTCTGGAACATCCTTTTT----------GCTTTGGgacaatctgtttcttttccacaAGGATCCTCTCTATGCAGTGAGCAAAG-----ATGTGGGTTAACCTG--CCTGAGTTCAGCATGCACTGTGGCCCTTAT--GGGGCTTTGTGCATCCGTGTGTGCCCAGTGACCAGAGAGTCTCAG-CTGCATCCTCAAGCTCAGCACTACTCT--GCATTTTCAAGAGCTTGCAGGAGAAAC-CATCCCTCTTTTT----------------GGCTACCAACACCGAGTTCAGTGCAA----CTGTGTGGGTTTGGCACAGGCAACCTCTG---CTACCCTGGCACTG--GAGGGGCATACATTTC--------------ATCTTTCTGATACTTGATGGCCTTTTGGGTATGCTTATTCTTGGTGGCCTGGGCAGTGTTAC-AGTGTTCTTAATATGAACATGGAGATCTGAACCT-TTGAATAGCATGGATTGGTGGGATTTCTTGGGTTAAGAGAGTAGTGAATCATTT

a score=16624
s chr3            78891849 577 + 160039680 ATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCTCTTCTGGCTTTGGAACGATCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGC----GCACCTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCT
s HiC_scaffold_1 187974829 509 + 233722169 ATTTTATGCaggatttatttctgtctcattGATTTTT------TCA--TCCTTCTGGAACATCCTTTTT----------GCTTTGGgacgatctgtttcttttccacaAGGATCCTCTCTATGCAGTGAGCAAAG-----ATGTGGGTTAACCTG--CCTGAGTTCAGCATGCACTGTGGCCCTTAT--GGGGCTTTGTGCATCCGTGTGTGCCCAGTGACCAGAGAGTCTCAG-CTGCATCCTCAAGCTCAGCACTACTCT--GCATTTTCAAGAGTTTGCAGGAGAAAC-CATCCCTCTTTTT----------------GGCTACCAACACCGAGTCCAGTGCAA----CTGTTTGGGTCTGGCACAGGCAACCTCTG---CTACCCTGGCACTG--GAGGGGCATACATTTC--------------ATCTTTCTGATACTTGATGGCCTTTTGGGTATGCTTATTCTTGGTGGCCTGGGCAGTGTTAC-AGTGTTCTTAATATGAACATGGAGATCTGAACCT-TTGAATAGCATGGGTTTGTGGGATTTCTTGGGTTAAGAGAGTAGTGAATCATTT

a score=17932
s chr3            78891850 576 + 160039680 TTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTGCT------------CTTCTGGCTTTGGAACGA-TCTGTTCCTTCTCAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCAC-CTACTGACTTCACCATTATACCGCCGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCT
s HiC_scaffold_1 187826452 542 + 233722169 TTTTATGCAgaattaatttctgttttataggTTTTT-----TTCA-CCCCTTCTGGAACATCTTTTCCTTCTGTGTAGCCATCTCTTTTGGCTTGGGAAAAAATCTGTGCCTTTTCCACAAAGATCCTCTCTTTGCAGT-----GTGCACATGTGTGGGTTAACCCAAGCCTGAGCTCAGCACGTGCTGTGGCCCTTAT--GGGGCTTTGTGAATCTTG-TGTGCGCAGTGACTGGAGAGTCTCAGT-TGTACCCACAAGCCCAACACTACTCT--GCATTTTCAAGCTTGTGCAGCAGAAACCCAGTCCTCTTTTT----------------GGCTACCAACACTGAGTCCAGTGCCT----CTGTTTGGCCTGGGGACAGGCCACCTCTGCTACAGTGACACTG--GAGTTGCATATATTGCTTCATTAGGGTGAGATCTTTCTGATACTTTTTGGCT--------ATGCTTACTCTTGGTGGCCTTGGCAGTGTCACAG-TGTTCTTAACATGAACATGCACATTTGAACCTCTTGAATGGCATGGATTTGTGGGATTTCTTGGGTTAAGAGAGTAGTGAACAATTT

a score=10859
s chr3            78892160 266 + 160039680 ttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCGAA-TGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGATTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACCATCT
s HiC_scaffold_1 186871257 255 + 233722169 TTTACTCTTTGGGGGCCAA------GCCCAGCCCCATTC----TTTGGCCTGG-TGCCACTCCCAAGCCCACTATtgaaacacccaagtggcacatATGGCTTCTTCTAGGTAACATCTTCCCAATACTTGGTGGCTTTTTAGATATGCATCCCCTTGATGGACTTGGCAGTTT-CTGGGCATTCCCAAAGTGACTGCAAAGATTTGAACCTCTTGATTTGTGTAATTTTGTCATGTTTGGGAGGTCAAGAGAATAATGAAACATTT

a score=11605
s chr3            78893438 257 + 160039680 AAGAATCTGGCCTCTCAGAGTCCACTGGAGAGAAAAGGGTGGAACACGGGACAAAAAAGGAGTAACAGTGGAGGGGGATTAAG-----TATATGGGCAATGGGCCAAAGAATTTTGTAAAATGTTGTGGCCATTGAGAAATCCCAAGGTGGTGAGATAGCTCAAATAAGTCTGTAGAACATTTCTGAAATTTGTTTTAAGACTGTTGGCTGTGTGACATAATCTCTCCCCTGTGGTCCACCCAACTTTCATTAAATGTTCTG
s HiC_scaffold_1 115435973 260 + 233722169 AATAATCTTGTTTCTCAAAGCCCACTAG-GAGGGGAGGGTGAGGTAGGGAAGGAAGgatgggaagggaagaaaggaactgGAGGAAGCTAGATGGGCAATGGATTAGGGAGTTTTGTGGGCTGGTGTGGCCATTGAGAAATCCCAGAGTGGTGAGACAGCCAAAATAACTTTTTGGAACATTccaaaaatgtgattttaaattgTTTGCTGTGTGACGTAACCTCTCCCCTGTGATCCACAAAGC-TTCATTAAAAGTTCTG

a score=6280
s chr3            78915640 202 + 160039680 CAAAGGTCCAAAATTAAAAGATTGGAA---------TTGGAAAGG-ACCTTTTCCCTTGTCAACTTAAGGCTGAAAGGCAAAGAGAA----GTCACT-----GAGAACAAGAGAT--GTTCGCAGTCTCAAGTCCTTTCACCTTCACTAT-CGTTCATTCAAAAGGATGGAGTCACCAAGACCCAACCTTTTCCCATTAGGCTCCTCCTCCCAGCACCATAGCA
s HiC_scaffold_1 165420614 224 + 233722169 CAGAGATTAGGAATTCCAAGACTGAGAGGCCCCCAGCTGGCAAGGCGCCTCTTCCTTTGTCATCCCATGGCAGAAGGCTGAAGAGTAAAGGGTCACACATGAGAGAGCAAGAGGTTGAACCCCAGCCTCAAACCCTTCCATCCTTAGTGTTCATCCTCTCACAAGGATGGACTCTTCATGACCTAAACATCTCCCATTACACTCCTCCTCTCTACACTATTGCA

a score=15849
s chr3           78966346 472 + 160039680 TTTCTTTAATT--ACATCGCATACTTCTGAGTCCATTCCCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAGCAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGACAAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAAATGCTGCCATTACTGTTAATATTTGGGTGATAAATTCTTGTTGTAAATGCAACCTTAGGCGGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAA----TACTCCACCCTGATAGGGGCTGTCATTTGGCCCCATTATTGTAGCCTGCCAATGAAACATATCATCTC---------CAACAGGACCTGCTGAACACTGTGCTGGGGGATCTCGAGCCAGGTCATTCAATTCCTTGTGGATTCTCTTCAGAGCCAT-GGTGGGAAACGGTGGCGAC
s HiC_scaffold_1    44375 471 + 233722169 tttttttaattttgcattgcACATTTCTGAGTCCATTCTCTTGTGTGTCTGTTGCATTTTTCTTGGTCTGATTTATAGATTTGTGCAATATATGGTACTT--GGGTCCTCTGGGTTAGGATCACAAAGTAGAGAACATATGGACAGTAAAACTTTTGA--TAGTCAAAGCTGGTGACCACTGTGACCTCAGGATATCAAGACAAATACTTCTGTTACTATTTATATTTGGATGGTAAATTTTTGCTGTGAAAGCAGTCTTTGGT-GTTTAAAAGGATAGTCTGTCAGAAAAC--ATAGTGAGGAAGAAGTCTGACTGTGTCACGGATGTGACCATCAGGAGGCCCT-TAATAGCTGCCTGCCAG-GGAACAAGTCAtccctcccctcttccccaggCC---CAGAAGGGTGAGTGGGAGGATCGAGCTGCAGAT-----AATTCTTTCTGAATCTGCTTCAGTGCCATGGGTCAGGGAGGGTGGCGGC

a score=16031
s chr3           78966354 448 + 160039680 ATTACATCGCATACTTCTGAGTCCATTCCCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAGCAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAA-CAGAGAACAGATGGACAAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAAATGCTGCCATTACTGTTAATATTTGGGTGATAAATTCTTGTTGTAAATGCAACCTTAGGCGGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAGGGGCTGTCATTTGGCCCCATTATTGTAGCCTGCCAATGAAACATATCATCTCCAACAGGACCTGCTGAACACTGTGCTGGGGGATCTCGAGCCAGGTCATTCAATTCCTTGTGGATTCTCTTCAGAGCCATGGT
s HiC_scaffold_1 55162671 423 + 233722169 ACTACATGGCACCCTTCTGAGTCCACT-----GATATTCTGTGGTGCTTGTCTCTGTCCATGTTTTAGATCCACACAGTCTCTGGTGCCAGGGGCTCATCTGGTTTGGG-TCACATGAGCAGTGAACAGATGGATAAAAGAGCTTTAGAAACAGTGGAAACAGGAGACGACTGTGATCTTAGAATATGGACACAGGTGCTGAGGTTACTGTGGCCATTTGCATGCCAAATCCTTGCTGC-AGTACAACCTTAGGTGTTCGGAAGGGGTCACCTG-CAGGAAGTGAATTGTCA--GAATATGCCTCA---TGATGTGGACTGT-GCTTGGTCCTGCACCTGTG----GCCAGTGAGA--------CTCCAGCTGGACCTGCAGAACCCCATGTTGGGGCATTGTGGGCCAGATCCCTGAGCTCCTTATTAATCTGCTTCAGTGCTTGGGT

a score=12003
s chr3            78966355 452 + 160039680 TTACATCGCATACTTCTGAGTCCATTCCCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAG---CAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGACAAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAAATGCTGCCATTACTGTTAATATTTGGGTGATAAATTCTTGTTGTAAATGCAACCTTAGGCGGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAGGGGCTGTCATTTGGCCCCATTATTGTAGCCTGCCAATGAAACATATCATCTCCAACAGGACCTGCTGAACACTGTGCTGGGGGATCTCGAGCCAGGTCATTCAATTCCTTGTGGATTCTCTTCAGAGCCATGGTGGGAA
s HiC_scaffold_1 157016260 449 + 233722169 TTATGTAGCGTATCTCTTGGTCCACTGTCTGGCCATTCTGTCATGTTCTGCTCTGTTTGTCATATA---CTGAGTGGCAATACTTCCCACCAAAGGGTCAGCAGGATTACAGTCTGTAAGAAGTGAGCAGATAGAAAGGAAGACTTTAGAAATAGTTAGTGCTGGACTCCAATTATCTTTCAATATATCCAAGCAAATAACTCCTTGACTGTTAATGTTACAGTGATAGATTCTTGTCGGAAATGTAACCTTTGGAGGTTTGAAGGGGTATTCTGGAGTAACAGTGATATCTAGGAAGAATACACCACCTTCATACACAGATCCTGGAGGTCCTAGAATGGTAGATCTCCACTCATAGATGTTGTCACCTTTGGGACCCGCACTGCAGTTAGGCGGAGGGTCTAGAGTGATGTCTGCCAGCTCCTTCTGAATCCTCTT---GGCGCTGGTGGAGA

a score=8155
s chr3            78979922 170 + 160039680 CTGCCTCTAGAGGTGTTGCAGGAGTGGCTGCTGTGTCATAGGTGCATCAATAGGTGGCAGAGAGGAGAAAGGCTATGTCTATGCT--GTGTTCTGACCTGTGAACATCTGAATGATTGGTACCCTAACCCTCCCTGAAATAAAGTGAACCTGAGACAGCCACC---AGTCTGGTG
s HiC_scaffold_1 194511548 164 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC--------AGTGCCCTTG---CAGCCACCTGAAGCCTTGTG

a score=5512
s chr3           79037332 164 + 160039680 ATCTTAGCAATTAAGATTAGAATGAAGGAAGCTGTGATTGCCAG-----TGGCCAC--ACTATCAA--------AGGAAAATGGGCTGACTTAGTATATAGCAACACAGACACGGAAGAAGCTTGTAAACTTGCTGCTATTCAGTGAATTCTAACATTGCAGAAAGGCACCAATGTGTC
s HiC_scaffold_1 67514863 164 + 233722169 ATACTAGAAATTAAGATCAGAATAAAAGAACTTGTGATTGCCAGGTCATTGGCTACTGGCTATCAACATACTCTAGAGTAATCAGCCAAATAACTAAGTGACATT---------------GTTTGTGAATTTACTGTTGTTTAGTAAATTCTAACATTGTGGAAAGACACAAGTGCGTC

a score=3462
s chr3            79211517 73 + 160039680 GCAGGGATTCATCTTGACATGACTTCAGCCATCTTGAATCACAATGGCCATGACTGCCCCTAAGTAATACTGG
s HiC_scaffold_1 171072322 73 + 233722169 GTATGGATTCAGCCTGACATGACTGTAGCCATTTTCAGTTGTAACCACCATGATAGCCCCAGAGTAATCCCAG

a score=3460
s chr3            79211526 55 + 160039680 CATCTTGACATGACTTCAGCCATCTTGAATCACAATGGCCATGACTGCCCCTAAG
s HiC_scaffold_1 193341569 55 + 233722169 CAGCTTGGCGCGACCGTAGCCATCTTGGGTCATGACGGTCATGACTGCCCCTAAG

a score=10808
s chr3           79295171 495 + 160039680 CTTTTGGCTGGAGCTGCTGTCTTCCAA-AGTTGGTCAAAATGACAAACCATAAAGTGAAAGGGGCAAGACAGCAGATGCATAGTCTCTAAGTCTTTTAGAAACCATGGGGTTCTT-----------AGACCTACGTACATA---------TGATAGAGTAAATGTCATGAGAATGAGTTCTGTT----GCATAATTTTTTTAAAGCCCATCATCACGACAAAAGTGTAAGA--TTCCAGCGTCACTCAGCATGCTGCTGGCACTGTTGTAGACAAGCAAATCCAGAACAAAGTTCTT-CCCCGACAAGTAATGT-----CCAGACCCACGCGTGCTAAACGCCAAAAGAGTTGGGGTGACTT-CTGAAGCAAGTGATGGAAAACAGTATGAGGAAGAAAAAGAAGTCACACATAAAGAGAGCCTGCCTGGGTTTAACCTAAAGTCCAGCCTATCCTCCCC--AGAAGCAAGCTGTGAGAAAC--ACGAACAGGAAGCTCATCTGCTAGAGCCTAGTCCCTGTGAATTTGAGGC
s HiC_scaffold_1 60922492 517 + 233722169 CTTTTGGCCAGAACCACCATCTTCCAGTAATTTGCCAAAATGATGAAg-acaaagggaaagaggaggggacCCTGGTGTATGTTGTTTAGGCCTTTTAGAAAACACAGGGCTGTTCCTTTGACCACAGACATGCGAATCTACAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAAT--GTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAAGAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACA------TTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGA--AAGCCAAAGAGAAAGG-----TACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGAACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGGC

a score=12500
s chr3           79295171 499 + 160039680 CTTTTGGCTGGAGCTGCTGTCTTCCAA-AGTTGGTCAAAATGACAAACCATAAAGTGAAAGGGGCAAGACAGCAGATGCATAGTCTCTAAGTCTTTTAGA-AACCATGGGGTT----CTTAGACCTACGTACATA---------------TGATAGAGTAAATGTCATGAGAATGAGTTCTGTTGCATAATTTTTTTAAAGCCCAT--CATCACGACAAAAGTGTAAGATTC--CAGCGTCACTCAGCATGCTGCTGGCACTGTTGTAGACAAGCAAATCCAGAACAAAGTTCTT-CCCCGACAAGTAATGTCCAGACCCACGCGTGCTAAACGCCAAAAGAGTTGGGGTGACTT-CTGAAGCAAGTGATGGAAAACAGTATGAGGAAGAAAAAGAAGTCACACATAAAGAGAGCCTGCCTGGGTTTAACCTAAAGTCCAGCCTATCCTCCCC------AGAAGCAAGCTGTGAGAAAC--ACGAACAGGAAGCTCATCTGCTAGAGCCTAGTCCCTGTGAATTTGAGGCTTAA
s HiC_scaffold_1 18289641 523 + 233722169 CTTTTGGCTAGAACTGTCATCTTCCAGTAATTTTCCAAAATGACAAAC-ACAAAGAGAAAGGGGACAGAAACCCAATACATTTTGTTTAGGCCTTTTAGACAAAAATGGGGCTGTTCCTTTGGCC-ACATACATGCGAATCTACAAAGAGTGATATCGTAGACATCAAGGGATTG-GTTCTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAGGGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGA-GCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatg--atcagaaaaagaagaaagccaaAGAGAAAGA-----TACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACTTTTGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=8928
s chr3            79381745 449 + 160039680 CCCTGGTAGAATATCTTTCCAGAAATCCATAATCTCTTAATGGAAACAGTTCTTTAGAGTGTCTAGAACAGAAAGGTAATTTCAAATTGAGACAATTAAAAAAAAAACAGAATAGTTATTCATAACTCAAAACAAAAACAAAACACCAACACCAAAACCCCTAGCAATCAGACAGGGTAAGATGTTAATATACAT-----GGGAGTTCTACCCAATCCTTGTTTTGTCAAGACTTGAAAAACCAAATGGAATTGTGGAGGAGCCACTTGGACAAAA----ACCTGCCAGCAGTTTCTCAGGTCTGGACTTCAGT----CTTCAGCCA-----------------------------------------------------------------------------------------------------------------TATCTCCTCTTGCCCCTGGGTGGACACTGAACAAATCAACTATCCACACTGATTGACTGTCCCATCAGA-ATTGATCATAGAATCCTTCCATAGCAGCCCAGGCCTCTTCGT--GGTTTATTCT----TAGACTAGACTCCT
s HiC_scaffold_1 127596388 548 + 233722169 CCTGGGAAAAGTATCTTCACAATGACTCATACTACCTTACCATCAATAGTGTTTAAGAGCtttta-atggtaaaagaaattttaaatgtaga------aaacaaaaatggaacatttatTAATAACTCAAAAGAAACAC------------TCAAAG-------------GTAGGGGTAAGAGATTAA-ATACAACCataaagcccccccccccagcattaTTTCTCCAAGGCT-ACATGGCCAAATGGAATCCTGGAGAGACCACCTGGACAACAGAACAACTGTCAGCGCCGTCTCCGATCTGGACTCCTGCTGCGCTTCGGCCACTCTGGGGAAAAGTAAAGAGGGAGGAGAGTCCATGAGAGGGACATAATACAGCAGTACCCGTGTTCTGTTTTACTCATATCCCCTTCACCACTAGTGTTTACCCTCTCCACTTTACCTTCTTTTGCCCTTGGGTGGACCTCGAACAAAACACCAGTCCACGCTGATTGGCTGGCCCATCAAATCTTGGCCATTAAGTCCCTCCATAGCAGCCTGGGCCTCTTTGTACGTTTCATACTCAACTAGAGTATACCCCT

a score=9915
s chr3            79381950 605 + 160039680 CCCAATCCTTGTTTTGTCAAGACTTGAAAAACCAAATGGAATTGTGGAGGAGCCACTTGGACAAAAACCTGCCAGCAGTTTCTCAGGTCTGGACTTCAGTCTTCAGCCATATCTCCTCTTGCCCCTGGGT-GGACACTGAACAAATCAACTATCCACACTGATTGACTGTCCCATCAGAAT-TGATCATAGAATCCTTCCATAGCAGCCCAGGCCTCTTCGTG-GTTT---ATTCTTAGACTAGACTCCTTCA-GTACCCTGTGTGCCTG---AGGATG------GTTTCTATTTCGCCGTAATAATTGAATTTGTCATCGATGTCTTTAGTGGCTTCCTTGTGGACTCCAGTGGCAAAGAGAATCCATCCTTCCACACAGCTTTGTGGTCCAGGCTCATTACTACTCTTTTCTGCACTGTCATAATCCCCTTGAATCC--TGTTGGTATCCTCTAAAGAGTCAAAGCCTGTGTCTTCAGTTTCTTCACTCTT-CTTTCAGTCTGTGGCTATT-TCATTCCCATCCTTATCCATG-GCAAGATCCTC-TTTTATGTCTCATGATGT----GGGGGTCAGACATCTTGCCTCCCTGGGAGCTCCCATCTGTCAATTAAAtttatttttaaca
s HiC_scaffold_1 155837947 599 + 233722169 CCCTGGCCCTATTTCTCAAAGACTT-CACAATCAAATGGAATGTTGGAGAGATCCCAGGGACACCAAAGTATCTGTTATGTCTCTGT-----------GTCTTTGGTCACCTTTCCATTTGCTCTTTGGTTGGACA-TGAAGAGAACAGAAGTCTAAACTAATTGATTGTCTCGTCAGATCATGGCCATTAAATCCCTTCCTAGTAGCCTAAACCTCTTTGTGTGTTTCATATTTGCTAGGTATACTACTTCATGTAGCCTCTACAACTTCCCAGGTGGCCATAAGTGTTTGTTTCCCCTTATTATGGGAATTTGATATGGATGCTTTCTTCATAATCCTTGTGTACTCCAGTAGCAAAGAGAATCCAGTCTTCAGCA----------------GCTCATGGTCATCCTGCACCATATTGTTGGAATGCTTTACACACCCATGCTGGGAACTCCTTCAAATCTAAAGCCACAACATCCTGTTTTTGaacttttgctttctgtttggACATACTGTCATCACCATTCTGGTCGATGAGTAAAATCCTCACTCCAGTTCTCATGAAGTTCAAGCATGTCCACCATATTGCTCTCATATATCTCTCAATCtgt---ttatattttccattaaCA

a score=6107
s chr3            79382191 121 + 160039680 CCTTCAGTACCCTGTGTGCCTGA------------GGATGGTTTCTATTTCGCCGTAATAATTGAATTTGTCATCGATGTCTTT---AGTGGCTTCCTTGTGGACTCCAGTGGCAAAGAGAATCCATCCTTCCACA
s HiC_scaffold_1 127597232 136 + 233722169 CTTTAAGTATCCTGTACGCCTGTCCAGGTTCAAATGGATGTTTTTTATTTCCCCATATTCTGCAAATTTGTCATGAATGTCTTCTTCAGTGGCCTCCTCATGGACTCCAGTGACAAACAGAATCCAGCCTTCCACA

a score=3665
s chr3            79382310 63 + 160039680 CACAGCTTTGTGGTCCAGGCTCATTACTACTCTTTTCTGCACTGTCATAATCCCCTTGAATCC
s HiC_scaffold_1 127597528 63 + 233722169 CACAGCGCTGTGGTCCAGGTTCGTCACCATCCTGCTCCACACTGTCATAATCCTCACGCATCC

a score=6737
s chr3           79455184 349 + 160039680 TCTCTGTTCTGGCTTGAAAGGTAGACTGAGGCTGAGAAAGCTGAGAAGGGGGATAC--GAGACA------CTGAAGCCAAGAGGGCTGGTGTCCCAGGCATGGCCA----------------------------------------------------CAGCAACCCTGGCCTGATCTGGG------------------------------TTCCAGAAAGGCCCGTGAGAGCGGAAGCGCTCAGGAACTGAATCCCAGCTTGTCAAAAAGAAGG---TTCTTGTCCCTGTCACAAAACCAGTTGAAGGTGACAAGCATGCTGGTGCCCAGTTGATAAG--TGGCACCCAAGTGCCTGGCTACTGTCCTACTGAAGATGTGCCATGGAGCTGTTGAACTGTGGCAAAAAATCTCTCAGTTAGCA-GTGAGGAAATGGCTTGCTGG
s HiC_scaffold_1 73935517 437 + 233722169 tctcttTCCCGTCTTGCAAGATGGC---AGGC-AAAAAAGCTGACAGACCAGATACTGAAGACAAGAAATCTGAAGCCAAGAAGGCTGGTGCTACTGATTTGGTTAAAAATGGTAATGTGAAGGCTAAAACATCCAAAGAAGGGCAGCCTCACTGAGGCAGAAACTCTGTCTTGCTTAGAGGAGTGGGTACACACTCCTGATTGCTATGTATTCCACAGAGGCTTTGTACAGAGGAGGTACTCAGCTGCTAAATCTATGGTTGAGAAGAAAAAGGAGTTTCTTTCTACTGTCACAAAACCAATTGGTGGTGACGAGAAGGGTGGTACCATGTAGTTAAACTTTGCA---AAATGCCTAGACACTACCATGCTGAGGATGTACACCTAAACAGTTGAGC-ACAGCAAAAATCCTTTCACTCAACATGTAAAGGAATGGGCAGCTAG

a score=20415
s chr3            79582419 853 + 160039680 TTTTAAAAAACCTAGAAAGAATCTCTCTCTTCTTTTGGAAAACACGAAATGGATGTTGATGCTGGATGGTGGGAGGACTTAGAGTGTCTTAGGGCTCAAGCTTAG-----------GAGGACACTGATCCCATAGAGGTAAAGCCAAAGAC------------CAGGCACCAAGCTGGGCCACATAGCTACAAAAACATGAAAATG---------GAAGAGATCTG---CTTGTTCTTGCTCATTAAGGAATCTGATATCATTGGCTTTTCCCTGGCTTTTGCATCTCTAAAGGATGAGGTGCTAAAGGCCATGCCAGTACAGATGCAGACTCAGTCTGTCCAGAGGACCAGGTTCAAGGGTTTTGTCGCTATTGGGGACTA-ACGGGTCATGCTGGTCTTGGTGTTAAGTTCTCCAAGTAGGTAGACGCTGCCATCCGAGGGGCCATCATCTTGGTGGGTCAAGCTTGTCATCGCCCCTGTGCAGAAAGGCTGCTGGAGGGATAAACCC---------CATACTGTCCCATGCAAGGTGACAGGCTGCTGTGGCTGTCCTGGTGCATCTCACCCCTGCACCCAGAGGCACTGGCATCTGTCTCTGCCCCTGTGCCCAAGAAGCTGCGGCGGCTGGCCAGTACTGATGACTGCTACTCATTAGCCAAGGGCTGCACTGACACCCTGGGCAACATTGCCAAGGCCACCTTTGATGCCATCTCCAAGACATACAACTACCTGACCTGACCTCTGGAAAGGGACTGTGTTCACCAAGTCTCCTTATCAGGAATTCCCTAACCATC-TGTGAAATCCCATACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTTGATACCGTGAAAGGATTTTTATACAAGAAAAACAAAGTAATTTA
s HiC_scaffold_1 161823472 722 + 233722169 tttcaaaaaacttAAATAG-------CTTCTTCCTTGGGGAACAACAAATGGATCACAC--CTGTGCAGTGGGAGGGACTAAAGCACCAGAGG-CCCTGGCCTGGAGTCTTTGGCAGGGGCCATTGGGATCGCAGCAGGGAGGCCAATGACAGGAGTAAATTCCTGTTACCTAACTGGGTGGGCTGGT--CAAGGACATAAAGATGAAGTCCCGGGAGGAAATCTGTATCTTTTCCTTACCCATCAAGGAGCCTGAGATGACTGACTTTCCCCGGG----TGCATCCCTCAAGGATGAAGTTCTAAGGATTAGGCCTGTGCAGAAGCAAACTCCTGCTGACCAGTGGACCAGGTTCAAGGCACCTGTTGCCTTTGGGGACCACAATGGTCACGTGGGTCTGGGTGTGAAGTGTTCCAAGTAAGGAGCCACCGTCATTCAGGAGGCCATTGTCCT----GGCCAAGCTCTGCA-CACCCCCGTGCCAAAAGGCTACTTAGGGAACAAGACTGGCAAGCAGCACACGGTCCTTTGCAAGGTGATGTGCCACGGTGGCTCT----GTACATCTGACCCTTGC-CCCAGAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGACCCCTGGAAAGAGACTGTGTTCACCAAGTCTTCCTGCCAGGAATTCCCTGAGCATCTTGAGGAAACTTACACCAGAGTCTCTGTCTGGAGGACTCAAGCTCCAGCAGTAGCTACAACATAAAGGTttttatacaagaaaaataaaatgaatta

a score=19672
s chr3            79582511 757 + 160039680 GGCTCAAGCTTAGG--AGGACACTGATCCCATAGAGGTAAAGCCAAAGAC---------CAGGCACCAAGCTGGGCCACATAGCTACAAAAACATGAAAAT---------GGAAGAGATCTGCTT---GTTCTTGCTCATTAAGGAATCTGATATCATTGGCTTTTCCCTGGCTTTTG--CATCTCTAAAGGATGAGGTGCTAAAGGCCATGCCAGTACAGATGCAGACTCAGTCTGTCCAGAGGACCAGGTTCAAGGGTTTTGTCGCTATTGGGGACTAACGGGTCATGCTGGTCTTGGTGTTAAGTTCTCCAAGTAGGTAGACGCTGCCATCCGAGGGGCCATCATCTTGGTGGGTCAAGCTTGTCATCGCCCCTGTGCAGAAAGGCTGCTGGAG---------GGATAAACCCCATACTGTCCCATGCAAGGTGACAGGCTGCTGTGG--CTGTCCTGGTGCATCTCACCCCTGCACCCAGAGGCACTGGCATCTGTCTCTGCCCCTGTGCCCAAGAAGCTGCGGCGGCTGGCCAGTACTGATGACTGCTACTCATTAGCCAAGGGCTGCACTGACACCCTGGGCAACATTGCCAAGGCCACCTTTGATGCCATCTCCAAGACATACAACTACCTGA--CCTGACCTCTGGAAAGGGACTGTGTTCACCAAGTCTCCTTATCAGGAATTCCCTAACCATCTGTGAAATCCCATACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTTGATACCGTGAAAGGATTTTTATACAAGAAAAACAAAGTAA
s HiC_scaffold_1 224721912 717 + 233722169 GGCAGGAGCTGAGGCTAGGCTGTGGGGCTCGCAGTGGCAAGACCAAGGACAGCGGATCCCTGTCACCAAGCTGGCCCAGCTGGT--CAAGGACATGCAGATCAGGTCCCTGGAGGGCACTGGCCTTCTGTCTTTGCCCACCAAGGAATCTGAGATCCTTGGGCTTTGGGTGGGGGGGGAGCATCCCTCAGGAATGAGGCTCAGGAGATCACAC-AGTACAGAAGCAGACTCGTGCCGGCCAGTGGACCAGGTTCAAGGTATCTGTCGCCCAATAGACCACAGTGGTCATGTTGGTTTGGGTCTAAAGTGCTCCAAGAAGGTAGCCATTGCCATCCGAGGGTGCACCATCCC----AGCCAAGCT----GTCACCCCTGTGTGGAGAAGCTACCAGGGAAACAAGATGGGCAAGCCCCGCACCGTCCCTTGCAAGGTGACCAGCTGCAGGGGCTCTGTGCTG-----------TCCTACTCCCAGAGGC------------TTCT--------------GATGGTGGCACAGCT-----------ATGACTGCTGTATTCCTGTCAGGGTGTGCGCTGCTGCTCAGGGCAACTTTGCCAGGGATACCAATCGTGTCATTTCCCAGCTCTACAGCTACCTGACTCCCAGCCTCTGGAAAGAGACCTTGTTTACCAAGTATCCCTA-CAGAAATTCACTCACATCTTATAAAGACCCATGCTAGAGTCCCT---------------GCTCCAGCAGTAGCTGCAAC-ACAGGGTTTTTATACAAG--AACCAAAGTGA

a score=22905
s chr3            79582563 710 + 160039680 CACCAAGCTGGGCCA------CATAGCTACAAAAACATGAAAATGGAAGAGATCTGCTTGTTC---TTGCTCATTAAGGAATCTGATATCATTGGCTTTTCCCTGGCTTTTGCATCTCTAAAGGATGAGGTGCTAAAGGCCATGCCAGT---ACAGATGCAGACTCAGTCTGTCCAGAGGACCAGGTTCAAGGGTTTTGTCGCTATTGGGG-ACTAACGGGTCATGCTGGTCTTGGTGTTAAGTTCTCCAAGTAGGTAGACGCTGCCATCCGAGGGGCCATCATCTTGGTGGGTCAAGCTTGTCATCGCCCCTGTGCAGAAAGGCTGCTGGAGGGATAAA---------CCCCATACTGTCCCATGCAAGGTGACAGGCTGCTGTGGCTGTCCTGGTGCATCTCACCCCTGCACCCAGAGGCACTGGCATCTGTCTCTGCCCCTGTGCCCAAGAAGCTGCGGCGGCTGGCCAGTACTGATGACTGCTACTCATTAGCCAAGGGCTGCACTGACACCCTGGGCAACATTGCCAAGGCCACCTTTGATGCCATCTCCAAGACATACAACTACCTGA--CCTGACCTCTGGAAAGGGACTGTGTTCACCAAGTCTCCTTATCAGGAATTC----CCTAACCATC-TGTGAAATCCCATACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTTGATACCGTGAAAGGATTTTTATACAAGAAAAACAAAGTAATTTAG
s HiC_scaffold_1 201775690 677 + 233722169 CACCAAGTAGGGCTGGCCAGTCAAGACTATGAAGATATGTCTCTGGAGGAGATTTATCTTTTCACCTTGCCCATCAAGGAGTCTGAGACTATTGATTTTTTCCTGGCT---ACATC-CTCAAAGATGA--------------TCCCAGTCCTGCAGAATCAAATTTGTGCTGGACAGCAGACCAGGCTCAAGGTGTTTGTTTCTCCTAGGGTCCCCAATGGTCATGCTGGTCTGGGTGTAAAGTGCTCCAAAGAGGTAGCCACTGGCCTCTGAAGGGCAGTGATTCTAGCTG----AGCTCTCCATTGTCTGTTTGCAGAGAAGCTGCGGGGGGAACAAGACCAGCAAGCCCCGTACTGTGCCTTGCAAGATGAGGGGCTGCTATGTCTCTGTCAG--CATCTAAGCCCCATGCCCAGG-----------------CTGCCTCTCTG--------------ATGGCTG-----CACTGAAGCCTGCCATACCTCTGCCAGGGGCTGCACAGCTCCTCTGGGAAGCTTCACGAAGGCCACCATTGATATCATCTCCAAGACATCCAGCTGCCAAACCCCTGACCTCTGGAAAGAGACTGTGTTCACCAAGTCTCC-CAGTAGGAATTTGCAGACAGACCATCTTGTAAAAGTCCACACCGGAGTCTCTGTCCAGAGGCCTCAGGCTCTAGCTGTAGCTACAAC-ACAGGGCTtctacatgagaaaaataaagtgaataag

a score=4129
s chr3           80048706 92 + 160039680 TATGTATCAAAAACTCATACCCGACATTGAGTTCTGACTTATAAAAGAGATATTTTTTTTTACATCAGCCTGTAAGTCTTTGACCAG-AAGTT
s HiC_scaffold_1   155820 92 + 233722169 TATGTATCAAAA-CTCATATCGAACAATGAGTTCTGGGTTGTAAAAGAGGATTTATTTTTTGCACCTGTTCATAAGTTTTTAGTCAACAAGTT

a score=4890
s chr3            80071236 241 + 160039680 TCATTGCTATAATGAAAAGCCAGAGTCAGGTTGCTTTACAA-----------------------------------TACTGTAGG---TGCAAGGTCAAGAAGTCCCATGGGATGATGTTTTCTTGCTGGGAGACTCTGCAGGTGGAACTGAGCACCACATGGTAGGAGACATGGAATATGGATGTCTACAGATTTGTCTGGTATgccttctgcttcttttgaagcgacaatgatttatttatagagttttcacctaaaggaccttatctaattttggc
s HiC_scaffold_1 214805809 277 + 233722169 tcattactataatgaaataccctAAAGAGGgcactttacaaagaaaagagttttatttttatttttaattttattttattctaggaAGTACAAACTTGAGTCACTGCAGCTGACATGGTTTTCTTGCTGGCAGAGTTTCAAGGTGGCAAAAGCTATCACATGGCAGGAGATAGGGAGTGTGCAGACATACATGTTTGTCTA--ATCCCTGCCTTTCATTATAAAACCACCAGGATTTAATCAGGGACATTCTACTCTAATGAAATTTTCTAATCCTAAC

a score=3585
s chr3            80854617 69 + 160039680 TGCCATTTGAAGATGAAACTATGCCCAGACAAATGTATCATCAAGTAACCCTGTCATTGTGTGAACATC
s HiC_scaffold_1 203947070 69 + 233722169 TGTCAGTTAACGATGAAGATGTGTCCTGAGAAATGTGTGGTCAGGCAATTCTATCATTGTGTAAACATC

a score=29648
s chr3           81404720 869 + 160039680 aagtcttaaatacactttacTGGtattatatataatattatatataatCCACACTAAA-TGCCTTTCAGTA-GTTGAAGGTAGCA-TTCCATGCCATAGGGAATTCTAATTAAGTTGGCA--------ACCTGAGGAATAGACAGTTTCCTCCTGCTAGCTAAATATGCTGT---ACAGACCAGTGA-CAGTAACTGAAACACAGAATTGGTTCTGGGTCATCAGTGATAAAA--TTTGCCCAGTATCTAAACATATTAATATGTCCTGTTATATAAATCCAAGAATAAAACA---TGTCAACAGGTTCCAAGGTATCAG-CATCATTTTTGTGGAAAGTGGACCACTTCTAA----GTTGAATCCTCTCTTGAGGAAGGGAGAACAGTGACAGAATTTATCCAGCTGGAGTTGCTATT-----TTCAAAATCATATCCACCTTACTACAAGTCAGTTTTACTTAAACCAGGACTGTCCAACAAGAAAACACTGTTAGTCGTTCATGATCTGAATCCTGGTGTATGAG-----TTAAATTGGAGTGTAC----AAAAATTATGAGACTTTTTTTAAGTCTCATTTTTTAAATAAATAAGGCAGTAGATTTATTTGTTAGTAGCCTTTTAAAGATAAGTT-TTAGGTCTGTCTTTTCTCCCC---TCTTAACTCCAGTGCAGATCA---------------------------GATTCTCCAAATACACCATCAGGGTGTCCTCGCCCCACCTGATGCCTTTGTTCTTATTGGCATCT-TGAAAGATAATCCAGTGGCCTGACCTTTATTCTGCAGAAACAGATCATGGAGATTTAGTCCAGTCTTATGGTTGCTCCCCTATTCTACAGTGTGGCACTGCACACACTTCTGAATAAAAA---TCTTGCCTTTGACAACATCACCCACTTTTAATTCTCCCATGG
s HiC_scaffold_1  5960638 902 + 233722169 aaatgttaaatattctttatt-----------tggtATTATACATACACCACGGTAAAATGCCTTTCAGTAAGTAAAAGGCAGCACTTTCTAGATACAGGGAATTCTAATTAAATTGGCATAGTCGATACCAAAAATATAGACA--TTGCTCCTTGTCTTCAACCACTCCCTTTAACAGGCTAATAAGCACAAATTGAAACAAGGGAGTCTTGCTTGGTTTTGAG-AATAAAGGGTTTCCCCAGTATTTAATCA--------------GttaaataaatctaaatataaaatcaatCTTCAGTAGGTTTTGAGATGACATTCTTAAGTTTTGTGAAAAGTCAAATATTACTAATCAAGTGCAACAATgtatttagaaaggaaaaacagtgatAGTATTTACTGAACTGGAATTACTATCAATGCTTGAAAAAAATATCCATTTAACTACAAGCCAATTTTACTTAAATCAGGACCGTCAAACAAAAATATTCTGCCAGCCACTCACAACCTGAATTCTGGTGTATGAGACCTATTAAATTATAGTACACATAAAAAAGCCATAAgacatttct---------gttctgtaataaACAAGACAGTGACT---GTTATTAGTAACCTTTTCGAGATAAGCTATTAAGTCGGCCCTTTCTCCCCTCTTCTTGATGCCAGtg-aaatcatttttgtttcaGGGATGTATTTCTTGGGATTCTCCAAATCCTCCATCAGTGTATCCTCTCCCCAGGTGATGCCTTTGTTCTTGTTGGTATCTGTGTAAGAGAATCTAGGAGACTGACCTGTCTTcctcccaaacagaccatggagATTTGGTCTGGTCTTGTGCTTGCCTCCTTTCtctacagtgtggcactgtgcACACTTCTGTACAAAAATATTCTTGCCTTTCTCAACATCAGCCATTTTTAAATGTGCTGTGG

a score=25059
s chr3           81404749 833 + 160039680 atataatattatatataatCCACACTAAATGC------CTTTCAGTAGTTGAAGGTAGCATTCCATGCCATAGGGAATTCTAATTAAGTTGGCAACCTGAGGA--------ATAGACAGTTTCCTCCTGCTAGCTAAATATGCTGT---ACAGACCAGTGA-CAGTAACTGAAACACAGAATTGGTTCTGGGTCATCAG-TGATAAA--ATTTGCCCAGTATCTAAACATATTAATATGTCCTGTTATATAAATCCAAGAATAAA---ACATGTCAACAGGTTCCAAGGTATCAGCATCA-TTTTTGTGGAAAGTGGACCACTTCTAAGTTGAATCCTCTCTTG-----AGGAAGGGAGAACAGTGACAGAATTTATCCAGCTGGAGTTGCTATTTTCAAAATC-----ATATCCACCTTACTACAAGTCAGTTTTACTTAAACCAGGACTGTCCAACAAGAAAACACTGTTAGTCGTTCATGATCTGAATCCTGGTGTATGAG---------TTAAATTGGAGTGTACA---AAAATTATGAGACTTTTTTTAAGTCTCATTTTTTAAATAAATAAGGCAGTAGAT-TTATTTGTTAGTAGCCTTTTAAAGATAAGTT-TTAGGTCTGTCTTTTCTCCCCTCTT---AACTCCAGTGCAGATCA------------------------GATTCTCCAAATACACCATCAGGGTGTCCTCGCCCCACCTGATGCCTTTGTTCTTATTGGCATCTTGAAAGATAATCCAGTGGCCTGACCTTTATTCTGCAGAAACAGATCATGGAGATTTAGTCCAGTCTTATGGTTGCTCCCCTATTCTACAGTGTGGCACTGCACACACTTCTGAATAAAAA---TCTTGCCTTTGACAACATCACCCACTTTTAATTCT
s HiC_scaffold_1 33955181 863 + 233722169 ATCTGAAATTATAGATCAACTATA--AAATGTGAGAAATTTTAAACAGTAAAAGGCAGCATTTTTTGATACAAGGAATTCTAATTAAATTGGCATCATCAAGACCAAAAATATAGACA-TTGCTTCCTTGTCTTCAAACACTCTGTTTAACAGACTAATAAGCACAAATTGAAACAGAGGAGTCTTGCTTGGTTTTGAGATAATGAAGGATTTTCCCAGTATTTAA--------------CTGGTTATATAAAGCTAAATATAAACCAACAT-TCCTTAAGTTTTGAGATGACATTCTCAATTTTTGTGAAAAGTCAAACATTACTAA-TCAAATCCAACCATGTACTTAGAAAGGGAAAACAGTGATAATATTTACTGAATTGGAATTAGtat---caaaacttgaaaaaatCCATTTAACTGCAAGCCAGTTTTACTTAAATCAGGactatccaacaaaaatattCTGTCAGCTACTCATGATCTAACTTCTGGTGTATGAGATGTATTAAGTAAGTTATGGTACACATAAAAAGCCATGAgacatttct--------gttctgtaa-----taaGGCAGTGACTATTACTCATTAGAAGCCCTTTTAGGGTAAGTCGTTAGATctgtcctttctcccttcttcttgatgtcagaaaagataatttttgtTCCAGGGATGTTCTTGGGATTCTCCAAATACTCCATCAACTTACCCTTTTTCCCGGTGAT-CGTTTATTCTTA-------------AGAGAATCCAGCAGCCTGATCTGTCTTCCTCCCAAACAGACCATGCAGATATGGCCCAGTCTTGTGTTTGCCTCCCTTCTCTACAGTGTGGTACTGGGCACCCTTCTGTATGGAAATCTTCTTGCCTTTCTCAACATCACCCATTTTTAAACCT

a score=10210
s chr3            81531214 1404 + 160039680 TAGTAGGTGCAAGACTTTATCTTTGAACTCAGTGCTGAGGCAGTGAAAGTAGCACTGG-CAGATTTTAATGACTTCTATT---AGTTAGATTGGTGCCACAACTGGAGCCTCTGTAACAGTCTTGGCAACACATGGAGACGGGCAGGTAACTGCATTTT---AGACTTCTAGATTAAGCAACATCACCCATGGCTAATTGCAGCAATTTCAGGCCACAAGTCCATTTAAGCTGTAAGCACCCCCTAAGG-TGGGATACCTCGTCCAATCCCAGTACTACCATGTTTGTGGTG-GCTGTAGACTCAC---ATCTTGACACAGTT--TTGCAGCATTGGTGACAAAAGCCTA---CTATTGATCCATGTTAGACCTTCGGAGAACCAAGAAGAATGCCACAGAAGCTGTTCAGTGGCTATAAATTATGGAAAAGTCACCTGGACTTGTCCTATGGACTAGGAAGGACATTGAAGGGATGTAACC---TTTTGAA---GTGCTCCTTCAGTTCTGCTGATAAAGATATGCAGAGCAGATTTGAAATAAACCTTGGCTCGACTTGCCCTCTAGGGCTGAAATAGGAACAACACGTAGCAGCAAAACCACTAG-AGAACTGGGTTTACTCCACTATCTAGTGTTGAAGGACTAAAAGTAAAGCCTAACTAACTAACTAAAAGCCTACAGGAAACATGCAGTCTATTTTATGACAATTGAAAAAAAAAAAAACAGTCACATAAGAAGATAGCCAAGATTATAATAAAGACCCAATTTTTAAA--CTACACAGGTATTCCAGTACAAACTATCCAGAGCTTCCAAAAACTAGGATGTAACCAACAGTCATAATAAGACAA--CAGGAAAAGACCAGTATATGTAAA----------------------TTCTGGTGTGGagaatttaaaacacctgcttagggaaaaagaaaaatcaatacacttctagaaaatacaaataggtggtttaatattgccaca---aaatttgaagaacgggatggaagcaacttttttgaaaagcaaacaaaaagtcttgaactgaaaaataagacacactgagcaagattcagaatatgctagaagatattcgtcgaaagatacatcaaagaaaaccttagtga-------tctcaag---gctatttgaagatatccacaatgagaattaaggaagagaaaatggaga-caaagaagaaaaatcacagaga-ttgatgactgcattaaaagagcaaatataaatccagcggaatttgagaatggcaaaaaggata--aatggagaagaaagcttttttagaaagataacagaaaacttact-------gagaaatgatacaaatac--------------------caggttagccca------------------aggtcatcagtgacatttcagt-----------gaaccaaata-----tataaggaaagtactaacatcagcctctaaaggaagaagaatgggaagtgtctcaaagaagcaagatgaagtga
s HiC_scaffold_1 112077689 1410 + 233722169 TAGTAAACACGAGACTTTGTTGCCAAGC---------AGACAA--AACATAACACTGAACAGAACGTAACAACCCTGGACCCAAGTCAGAT----ACCATAAATGGAGCTACTGAAGCAATCGTTGAAGAA----GGAATAAACAAATGACCCTATTCTTTCAAACTTCTATACTGAACAGCCTCAACTGTGACTGGCTGTAGCAATCTTGGACCACAAGCCAATTTTAGCAATAAGTAACCCATAGGGATATGGGCCTTGGTCCTCCACCAGTCCTTCATTGGTTTTGGTGAGCTGTAATCTTACAAGATTTTGGCACTGATAATCACAGAAGTGGC-ATAAAAGACTGGGCTTGTTGCACCGCATGGATTCTGTGCAGAGCTGGGCAGAATCCTTCAGTATCTGATCACAGGCTGGTAATTGTAAGCTAGT-ATCTAGGCCTACCACAATCACAGGGAGAGGTTTGTGGGGGGGGGAACTACATGTTAGACCTATTTTCCTTATGTATGCCTAATAGC-ACACTAATGGCAGACTGGATA-AAATCTGGACTTGGAGTGTTCTCTAGTGATAACACAGGTAAAGTGCGTA--AGGACTATCTTCAGCAAACCTGAATTGAGGGCACCATCTAGtgataaaaatcataaagtgATGC-------Actagacagaaaaatat---aaacat--------ttgctTAAAAATCTGggaaagata-------tataaataaagattACAAAGACTGGAATAAA----TAACGTTCAAATGTTGCACA------CCAATA------------AGCAT-CAAAAACAACTAGGTAACCA--TATCATTATGTAGCAAATTAAATGAATGACAGTGTTCATACAGTACCCAGGATGGATGGGAGTGCTGTGAGTTGGAGAATTTAAAACTGCTGTTT------TAAGGAAGTTTGATGGACTTAAAGAGAACAGAGGGAAGTGATCAAATACATTAAAAGAGAAACTTAACAAAAAGGTAAGAagga----ttacaaaaataaaactagaaatcctCAAGCAGAAATGTAGATTCACTGAAT----TTGCAAACATGATAATAAAACAACCACAAAGAATAAAGCAGGtaaaacagaaggaaacagaATTCACAGGTAATCTATTTGAAAGT----ACACTGAGGA-----AAAAATAAGGTGAAGAGTAATGAAGAAAGCTCATGGAAACTTTGGGAGAGCATTAAGAAA--CAGTCTCGTTTTAGTGG---TTCAAAATAGACATTAGAATAACAAAAGCGTAGAAACgtcattaaaataaatgataaccaACTTCCTAAACCTAAAAGaaagatatacatacatatgcatgtgcatgaaggTCAAATAAGCCAAATCATATGGAACTCAATCAAATCATATTTGACCTTCCAATTCAGAATTAGAAGATCAAATATGAACTATAAAGACAGTAC---CTCCAGCCTACAAGCAAAGAAGAAC----------------AAATAACATGAAGTGA

a score=5734
s chr3            81880726 106 + 160039680 ACTGCCCCTAGAGGTATTGCAGATGTGGCTGTTGTGTCATGTGTGCATCAGTACGTGGTGGAAAGGACACAAGCCACATCTATGCTCAGAGTTCTAACCTCTGAGT
s HiC_scaffold_1 194511547 106 + 233722169 ACTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAAT

a score=4059
s chr3            82097672 67 + 160039680 TGACATTGTTTCCAAACAGGCAATACCGGGGCATCTTCACTCCGACAACTCCAGCAAACACTGATCC
s HiC_scaffold_1 177571835 67 + 233722169 TGACTGTGTCTCCAAAAAGACAATAGCGGGGCATCTTCAGGCCAACAACCCCAGCACAAACTGGTCC

a score=21322
s chr3            82671939 626 + 160039680 TTTGAGAAACTTAATTCACTTGGTTTTTCTTGTATAAAAACCCTTACTTGGTAGCCATAGCTAGAGCCTGAGTCCTCTGAACAGAGACTCTGGGTTTCCACAGATGGTCAGTGAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCAGAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGCAATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTACTGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGTGCCTCTGGGTGCAGGGGTGAGATGCACCAGGAC--AGCCACCGCAGCCTGTCACCTTGCCTGGGGC---------------TTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATGGAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCTACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATAGAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGGCCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTTCAGGGTTGTGCCCA
s HiC_scaffold_1 178178368 572 + 233722169 tttaacagatttcGTTCACTT----TTTCTTGTGTAAAAACCCTATGTTGG-AGATACTGTTggagcttgtttttttt----------------tttaca-agatgGTCAGTGAATTCCTGGTAAGGAGACTTGGTGAACATAGTCTCTTTCCAGAGG-TCAGGGATCAGGTAACTGTAGGTCTTGGAGATGGCACCCAAGGTGGCCTTGGTGAAGTTGCCCAA--------------------AGTGGCAGT--GCAGCCcctgccagcagcagcagcttcctGGGCACAGGGCACAAGCACAATGCCTGTGCTCCTGGGGGCAGGA-TCAGCCACATCAACACTGAGCCACAGCAGCCTGTCACCTTGCAAGGGACAATGTGGGCTTTGTCTTGTTCCCACATTAGCCTTTCTTCACAGGAACAACTGAGAGCTTGGCC----AGGATGATGACCCCTCAGGTGATAGTGGCTATCTCCTAGGAGCACTTTTCAACCAGATAAACTTGACCATTGTAGTTCCCAATAGTGACAAATGCCTT--------------------GAACCTCATCTGTAGGTCAGCACCAGTTTGCTTCTGCAAGGGCATGATTTTTAGAACTTCACTGTT-AGAAACGTACCCA

a score=25665
s chr3           82671945 620 + 160039680 AAACTTAATTCACTTGGTTTTTCTTGTATAAAAACCCTTACTTGGTAGCCATAGCTAGAGCCTGAGTCCTCTGAACAGAGACTC---TGGGTTTCCACA-GATGGTCAGTGAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCAGAGG----ATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGCAATGTTGCCCAGGATG------CAGCCCTTGGCTAATGAGTAGCAGTCATCAGTACTGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGTGCCTCTGGGTGCAGGGGTGAGATGCACCAGG-ACAGCCACCGCAGCCTGTCACCT----------TGCCTGGGGCTTAT---------TCCCCCAGCAGCCCCTCCGCACAGGGATGATGGAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCTACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATAGAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGGCCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTTCAGGGTTGTGCCCA
s HiC_scaffold_1 23605996 627 + 233722169 agatttcattcattttatttttcttgtgtaaaAACCCTTATGTTGTACCTACCGCTGGAGCTTGAGTCCTTTGATCAGAGACTAGTGTGGGTTTTCACAAGACAGTCAGTGAATTCCTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCTAGAGG-TCAGGAGTCATGTAGGTAACTGTAGGTCTTAGAGATGGCATCAAAGGTG-CCTTAGCAAAATTGCCCAAAGTAGCAGTACAGTCCCAGGCAAAGGTGTAGCAGTCATCAATACCAGCTATGAGCAGCATCACTTTGGGCATAAGGCCTGAGACA-ACCCCAGTGCCTTTGGGTTCGGGGATCAGACACACCACACAGAGTCACAGCGGCCTGGCAGCTGGCAAGGGACTGTGTGGGGCTTGTCAATCTTGTTTCCCCAGTGGCCTCTCCTCTCAGGAGCAATGGAGAGTTTGTCC----AGGATGATGGCCCCCCGAATGGCAGTGGCTACCTCCTTAGAACACTTTAAATCCAGAGCCACGTGACTTTTGTATTCCCCAGGGACGACAAATGCCTT--------------------GAGTCTGGTCCCCTGGCCAGCACGAGTTTGGTTCTGCACAGGCATGATCTTCAGGACTTCATCTTTGAGGGATGCACCCA

a score=25644
s chr3           82671946 619 + 160039680 AACTTAATTCACTTG-GTTTTTCTTGTATAAAAACCCTTACTTGGTAGCCATAGCTAGAGCCTGAGTCCTCTGAACAGAGACTCTGG-----GTTTCCACA-GATGGTCAGTGAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCAGAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGCAATGTTGCCCAG------GATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTACTGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGTGCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTCACCTTGCCTGGGG-------------------CTTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATGGAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCTACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATAGAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGGCCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTTCAGGGTTGTGCCCA
s HiC_scaffold_1  1549992 585 + 233722169 aatttcattcatttttattttccttgtgtaAAAACCCTTATGTTGTAGCTACTGTTGGAGCTTGAATCCTTTGGATGGAGACTCTAGTGTGAGTTTTTTCAAGATGGTGGGTGAATTCTTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCCAGAGG-TCAGGGGTCAGGTAGCTGTAGGTCTTGGAGATGGCGTCAAAGGTGGCCTTAGCAAAGTTGCCCAGAGTAGCAGTACAGCCTCTGGCCAG-GTGTAGCAGTCATCAGTACCAGCCATCAGCAGCAGCTTCTT-GGCACA-GGGCTGAGACA-ATGCCAGTGCCTCCCGGGGCAGGGATCAGACGCA-------------------CTGTCACCTTGCAAGGGACTATGTGGGGTTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCGCACAGGAGCAATGGAAACCTTG----GCCAGGATGATGGCCCCGCGAATGGCAGTGGCT------------------ACACCCAGACCAATGTGACCGTTGTGGTCCCCAGTGGCGACAAATGCCTTGC--------------------ACCTGGCCCACTGACCAGCACGAGTTTGCTTATGTACAGGCATGATCTTTAAGACTTCATCCTTTAGGGATGCGCCCA

a score=66294
s chr3            82836531 1935 + 160039680 ATATATTTA--ATGTTGAAG--AATTTGAAGTATAAAAATTAAACAACACATGATTTCAACATTTAAAAAACATTAACACTTCTT-ATGTAAACAATGTAATGAATATCAA-AACATAAATGAATTATAACTATAAAAACCTTAAATATAT----TAACAGCAAAGTTTTAATTTATTTCTGTAACAAATA------------------------------------------------------------------------------------------------------------------TTAACTAAAATATTTGC--TTACTTTCAAGGACCACAAAGGTAGACTGATTTTTCATTACTTCTGCCAAAAATTT------GCATCTTAATCTTTTTTGTCTCATCATTTCTTTTTACATAATAGTTAGATGCTTCTGGTTACATAACTGTTTCAAACTCCACTATAGATAGCGATCCTTGGTAATCTAATCTAGTACAACCACTGTCTTTAAGTACTTTCAATATTTGTAAAATGCTGTTTTACAAAGTT-GTTATACAAAAA-TCATAAACAACAGGAATCCTTT-CAAGCTCAGGAATT----GGAAACCCCCAAAGCTTAAAAATAACAGTAGTAGTTTGCTA--TCACTGAGTAACTTTTAAT--TGCATTTCTGCAAATCCTACCACTCTTGTCATTCTGAATTATAGCTG---TTTAATATGTTAAAATAT-------------------------------------------------------------------------------------------------------------------------------TTGCTTTTAAAGTCACATGTGCAAACCCAATTCTAAAATACAACAGTATGTTAATTTCCACGCCTTATACAAAGGGAAGTTTATATACT---ATATCCAGACTTTCTTCAGAAGAATGAGGCCTGATTGGAGATATACAGTCGTTGTCCAACAT-----GGCTGCCATTAGCAAGTGATATTGTTGGTGACAAGGGATAGCTTGGATAAGAAGAAGGCCTTGATGTGTAAGGAAGCATGCTGGGAGTCCCAGAAGAGAGGGTAGTGCTAACAGGGGAAAGACTATTTATTGAGCTGCGACGGAAATTGAAGTCTGTAAATAAATATATGAACAGTTATGCTGCACATCTTTGTGGACACAAATTTAATTCAAA-AGACAAAACATTCAAAAGACAATCACGTTTTAACATAATGTTCTAACATTTAAATA-CCTGATGCTACTGTAATGATGGT--GGATTACT------ATCTCTGCAGTGCAAACACCAGCAGTTACATCAAGTCAG--GGTTCTTCCCAACACTGTTTGAAC--------GGTCTAACTACAGTGCATTTTGGGTATCTTTTTCTTTTTAACACAGAAAAAGAGAACCTCTGATTTCTCTTTAATCAACAAAAAGTTTCTCTTAAA-TTGGATCTGACACCAAGG----GTAGATCATGAAGAAAAAGATAAAAGAACAGTGAATTCAGtttcttttcttttttccttttttttttttttttAAAAACATATTAGATATCAAACCAGCATAAGCATTTGCCCTTGGACTTCTGATATAAACTAACTGTCCAAAATTTCATTATTTAAATGCTGGCACAAACATTCATACAAC--CAAACATCAATTTAACA-TTAGAGTCTCACAGTTACCACAAAACAGTAAAATGAATCATCTCTACCAAAAGAACGTCAA-AAACCATTATCAACTTAATAGTATAGAAAATTATCCAAAA--TTAACCaaattatt-aaaacaattatatttgaaatatta-atttCAAACAAACGTTCATCTTATGCACCAATAATTTCCTGTTTCCTTAATTGTAGTAATTCTGTAGGTGTGTGT---------TTTATT---GACCAAATTTGTAGATCCTGGACTTTCCAAAAACTCAACTATGCTCTTTACTATAGCATAAGTCAAAGTGGTTGACTGTGTCTATAAAATGATCATTTTTAAAAGTTGTGCTATTGTTGAAATGGAAAAAATTGAATAAGATCATTTACTATACAGGTCAAGCT-TTCAGCCTCCAATAACATTC----ACTATG----AGGTCTACAACACATGAGGATTAACTTAATGTTTAACGAACAGGAGTGAGACCAACTGCAGGAGAATAAGCTCAAGCAACATCAGAAAGGACCTATTTA
s HiC_scaffold_1 160129270 2135 + 233722169 ACATATTTAGTATCTTGAGTTCAAATTCAAGTACAAAAATTAA------CACGATTTTAACACT--AAAAGCCATAACACTTATTCATATACAC-------TGAATATTAAGAACACAAGTGAAACATAACTATAAAAACCTTAAGTATATATGTTAACAGCAAACTTAGAATTTATTTCTATAACAAATAATTAttcctttgagattttttttttggtaccaggaatcaaactcatgacctcatgcttgccaggcaggtgttatgctgctgagatatatccctggctgttttaacaaataattattaattaaagTATGTATAGTTATTTTCAAGGATCAAAATGGTAGATTGTTTCATCTTTAGTATTACATGAAATTTAGTTAGGTGTCTCAATCTTTTT-GTGTCATTATTTCTCCCTAACTAATG------------------TATATCTGTTTCAATCTCCAATGCAGATAGTGATCCTGGGTTATCAAATCTAGTATAACTGTTG-CTTTCAGTAGCTT-AATATTTGCGA----TTATGTTGCAAAGGTAGTTacacaaaaaataacaaactacTAGAATCTGTTGCCCACTCAGGAATTACAAGAAAATTCC--AAGTTTAAAAAGAA---TAGCAGTTTGCTAAACTAATGAATAACTTCAAATAGCGCATTTTTATAAACTCTATAATTCT-GTTATTCTGAATTATAGCTGATGTTTAATATGCTGggatatattatttttacatattatttttattttttactttattattttttctggtgCCAGCAATCGAATTGAGGgttttgtgtttgccaggcaggtgctgtgctgctgagttacatccctgacccgggatatattatttttaaagctaaatgTGCAAACCTgactctaaaataaaacaata-----atttgcATGCTTTACATAA---GTAATTTTCATACtgatatttttagattttctttacaAGAATGAGGCCTGATTGGAGATACATAGTCATTGTCCAACTTCAGTTGGCTTCAATTAGCAGGAGGTATTATTGGTGACAAGGGGTAGCTTTGATAAGAATAATGCTTTGATATATAAGTAAGCACACTCAGAATCTCAGAAGAGAGGGTAGCACCGACAGGTTAAAGAGTATTAACTGAGCTGCAATGGAAACTGTAGtctgtaaataaatacatggacaATTACACTGCACATCTTTATGGACACAAATTTAATTGAAAGAGACAAAGCATT-AAACTAGAATCACATTTTAACATAACGTTCTAACATTTCAAAATCTTGATGATACTGTACTAGTGGTAAAGATCACTTCCATGTTCATCACAATGCAAATCCTCACAGTTTTATCAAGTCAGTTAATGTTTTCCTTCACTGATAGAATGCTTCAGAGATCTTACTAGAAtgcatttttggaat-------tttttaatgtaaagaaag-----------TTTCTCTTGCTCTACAAAGAAGCTTCTTTTAAATTTGGTTCTAACGCTGAGGAGTAGTagttcatgaagaaaa----aaaataacagttcat--agttac---------------------tttttagaaaaattgtATGCGTTATCAAACCAGCACAAACATTTGTC--------------ATAaactaatttattaa-----ttttatctaaaTGCTAATGTAAACATTTATATGCCTTCACATACCAATTTAATATTTAGAGTCCCACTGGTACCACAAAACATTAAGATGAATCATCTTTATAACATAAAGATTAAGAAATCACTATCAActt-ttaatatagaaaaatattcaaaaattaaaccaaattattaaaaacaattatattcaaaatattatttttccagtttacGTTCATCATATGTACCAATAATTTCCTGCTTCATTAACTataataattgtgtgtgtgtgtgtgggtgtgggtgtatTAAGGACCAAATTGGTAAATCCTGTACTTTCCAAAAACTCAACTGTG---TTTAGTGTAAAATAAGTCAAAG-GTATGACACTGACTATAAAATGGTTCTTTATAAAAGTTAAAGTGTTTCTAGGAAGGTGGGAATT-----AGATCATTTATTGTACAGGTGGAGTTATTTTCTCTGCAATATTGTCCTGATACCATAAATTAGGCCTATAACACATAAGCATT------ATGTTTAGCCAATAAGAATGAGAACAACTGCAGGAGATTAAGTTCAAGCAACATCAGAAAGGACCTGCTTA

a score=5656
s chr3            82842471 75 + 160039680 ACCTGCTTATTTCCTCCAAATTCTTCTACACAGGTCCAGGCTGAAGAGACTGTGTTCCCTGTCTGTAAGCAGTGA
s HiC_scaffold_1 160131396 75 + 233722169 ACCTGCTTATTGTCTCCAGATTCTTCTACACAGGTCCAGGCTGAAGAGACTGTGTTCCCTGTCCAAATGAAGTAA

a score=59957
s chr3            82863899 799 + 160039680 CTTACCCAAATGAAGCAGTGTAAACTGAGCTGCCAGCTCCTTTGCATCCTCCAGCGTTGTGCAGAGTTTATCTGGCATGAAGTAACTCTGAGATCCATTTGCGATTGCAGGGATAACTATCTTGTACACCAAGAGTACTTTCCCATCCTGACTGGTTGTTGAATATAAATAATATTCTGGTGGTGCCCAATTATTTTTGTTGCAGTAATAATCCAAATGCATCACTGCAGAATTAAAATGATTGGATTTTAAAGAATACATACTAATTGGGGTCAGCTTTGTTCCAGGAAAAAAAGGGTAAGTACATCTTTCAATCTCAGGGGGGCTTGGACTATGCTGACCATTGAGACGAGTGGGGAGAGTTGGTGGCTTGCCTAGACTTTTGGAGTGACTCTCTTCCTTGTTAGCATATACAAGTAGGTTTTCAGAATTGGGGCTGATCTGGCCATTAAGATGCTGTCGCCAAGTATTTTCCTTATTTACTGGCTTTGCCAGGGTTACCTCAATACTGGCTCCATCAATGCACTTTCCATTCATCACAGACATGGCAGCCACTGCATCTTCTCGGTGGAAAAAGTGAACAAAGGCATAATCTCTCAGTTTCTTCACTCGCTCCACTGCGCCAGGCTTGAATTTACTGAACTCTGCTTTAATTGTCTCCTCTGTAGTTGAGATCATTAGATTTCTTACATACAGAACTTTAACTCTTTGCATGGTTTCCTCATCAACTTCTTTCTCTGGATCAGCCCAATCTACCTGAATGGTGTGGCCCCAGAGTTGAAATGTTCCTGAAAAAAAT
s HiC_scaffold_1 160131453 799 + 233722169 CCTGTCCAAATGAAGTAATGTAAACTGGGCTGCCAGTTcctttgcatcttctaatgtaGTACAGAGTTTGTCTGGCATGAAATAACTCTGGGATCCATTTGCAATAGCAGGAATAACTATTTTGTATACCAGGAGTACTTTCCCATCAGGGCCAGTTGTTGAATATAAATAATATTCTGGTGGTGCCCAGTTGTTTTTGTTGCAGTAATAATCCAGGTGCATTACTGCAGAATTAAAATGATTGGATTTTAAAGAATACATACTAATTGGAGTAAGCTTTGTTCCAGACAAAAAAGGATAAGTGCATCTTTCAATTTCAGGGGAGCCTGGGCTATGCTGACCATTCAGAAGAGCAGGAAAAGTTGTCAACTTGCCTAGAGTTTTGGGGTGGCTCTCCTCTTTGTTAGCGTACACAATCAGGTTTTCAGCACTGGGGCTCATCTGACCACTAAAATGCTGTCGCCAAGTGCTTTCTTTATTCACTGGTTTTGCAAGTGTTACCTCAATACTTGCTCCATCGATGCATTTTCCATTCATAACAGACATAGCAGCTACTGCATCTTCTCGGCTGAAAAAGTGAACAAAAGCATAATCTCTAAGTTTTTTTACTCGTTCAACTGCACTAGGTTTGAATCTACTGAATTCTGCTTTAATTGTTTCTTCTGTAGTTGAGATCATTAAATTTCTTACATAGAGAACTTTAACTCTTTGCATGGTTTCCTCATCAACCtctttctctggatcagcccagTCGACCTGAATGGTATGGCCCCATAGCTGGAATGTTCCTGGAATTAAT

a score=37734
s chr3            82865203 477 + 160039680 CCTGGAATCAGCTTTCTCCTGGCCATAGCAGCAGCTCTGTGGGACTCATACTCAACAAAGGCAAACCCACGGTTCTTGGTTTTGTCAGTTGCACTTGGATAAACAATCACATCCACAACACCTTCGGTAACTTTCTTCATTTCATCCAAAATTTCTTCCTTTTTCTTTTCTTTGGGAATTGCTCCAATAAATAATCTGCAATTATCCAAGCTTACACACACACCAATAAACTTCCCTGGTCGAATTTCATAATTGTTAAGAATCCGGATGGCTAATTGGGCTTCTTCTTTAGTAGTATACATCACAAAAGCATAACCTCTATTTTCACCACTAAATTCCATCATCAGTCTAAATTCATATATCTTCCCAGCTCTTTCAAATACAGGAACCAGTTCATCTTCATACATATCACGAGGTATTTTTCCAACAAAAACTTCACAACCTCTAGGGGGAGGTGGACCTTCCCAACCTGAAAAA
s HiC_scaffold_1 160132240 477 + 233722169 CCTGGAATTAATTTTCTTCTAGCCATAGCAGCAGCTCTGTGAGATTCATactcaacaaaagcaaaaccacgATTTTTGGTCTTATCAGTTGCACTTGGATAAACAATGACATCTACAACTCCTTCTGTAACCTTCTTCATTTCATccaaaatttcttctttcttcttttccttgggaATAGCTCCAATAAATAATCTGCAATTATCCAAGCTTACACACACACCAATAAACTTTCCTTGTCGGATTTCATAATTATTAAGAATTCTGATGGCCAACTGGGCTTCTTCTTTTGTAGTATACATCACAAAAGCATAACCTCTGTTTTCTCCACTAAACTCCATCATAAGCCGAAATTCATATATTTTCCCAGCTCTTTCAAATACAGGAACTAACTCATCTTCATATATATCACGAGGTATTTTTCCTACAAAAACTTCACAGCCTCTAGGTGGAGGTGGACCTTCCCAACCCGGAGGA

a score=11414
s chr3            82866479 169 + 160039680 CCCCACCTGGAGGAGGACCACCAAATTTCCTTTGCCCATTTTCTTGGACCATGTTGTAGCCAGTCTTTTCCATGAGAGCCAGCAATGCGGCTTCATTCTGAGTGCCAGTGCGCACTTTACTGCATCCATTTGTACCATCAGTGTTTTCTTCATTCATGGTTGCAATTCC
s HiC_scaffold_1 160132703 166 + 233722169 CCCAACCCGGAGGAGGACCACCAAATTTCCTTTGTCCGTTTTCTTGAACCATGTTGTACCCAGTTTTTTCCATTAAAGCAAGCAGTGCTGCTTCATTCTGAGTACCAGTTCGAGCTTTACTACATTCATTTGTCCCATCCATATT---TTCATTCATGGCTGCATTTCC

a score=3940
s chr3            82952478 88 + 160039680 TCAAAATAGCAAA---TCAAAGCCAGGAATATAGCTGTGTGGTAGAACACTTCCTAGTATGTGAAAGGCTGCAGGTTCTACACCTCACTac
s HiC_scaffold_1 167172636 91 + 233722169 TTAAAATAGCACAGACCTGGGACTGGGGTTATAGCTTTGTGGTAGAACATTTCCCAGCATGTGGAAGGCTGTGGGTTTGATCCGCCATCAC

a score=3854
s chr3            83043820 88 + 160039680 TTTCCGAATCCTTTTTTGTATGGGTCCCATTTCCTGCCAAAGTCGACGCTGCCATCCTGACGGTTCTGTATGACTGTCCATCCTTTAG
s HiC_scaffold_1 186376100 88 + 233722169 TTGCTGGGTCTTACCTTGTATGTCTCCCAGTTCCTGAAGAAGTTGACAGAGCCATCCAGGCGCCTCTGAATGACTGTCCAGCCCCCAG

a score=3607
s chr3            83271783 101 + 160039680 CTAGGTCTGTGCAAGGATACTCCATGGTGTTTGCACAGTGATGAAGCTGGCTAGTGATATGTT-CTCAGAATGGATGCTGACCGGTAAGCAATTCATGATTG
s HiC_scaffold_1 210900323  96 + 233722169 ctAGGTTT----AAGGATACTCTATGGTGGTTGCACAGTGATGAAACTGCCCAATGACCCATTCCTCGGGACACATCCTTGTCAATAGCAAA--CATGACTG

a score=3828
s chr3            83376683 93 + 160039680 TGTTGAAGCGTATCCTATAATGTTCCCCAAATGACAGGATCAGCTAGTGGTACATTTCTCAGAACACGTCTCCAACATGAAGTGACACATGAC
s HiC_scaffold_1 210074502 93 + 233722169 TATTGAAGTATACTCTGTGATGTTTGAACAATGACAAAATTGCCCAACAACATATTTCCCAGAACACCTCCCTGTCTTTAGGTGACACATGAC

a score=5049
s chr3            83836482 373 + 160039680 CCACTCCAGGTAGGTCTTGGTGTTCATTATCTTGCGCAGTT--------TGCAGAAGCGCTGGGGAATGGCTTTCCTCTCAATGGGCTCCAGCAAAACAAGGATGGCCGCGTCGTTGTTCTCGTCAAAGAGCCTGAAGTGGGAGAAGTCCAGTTCGTACTTGCACCACTCGCTCCGTACGAAGTTCTCAGAAAGCACGAACACAGTTTTGTGGCTCTTTTCGATGGAATC-------GATGATGTTGTCAATGATCCATTTGCCCGGAACGAAGTCCCGCTTGTGGAGACACAGCTTAAAGGGCGGGTCAGAGTTCTCCAGCTGCTGGACCATGAGGTTCTCCACCCAATGGGAATCCTGCTCACTGTAGGAAACAAAGGCATCATAG
s HiC_scaffold_1 155967587 373 + 233722169 CCATTCCAGGTAAGTGTTCCTGTTAAGGAGGCGATACAGCTCTACCTGCTGCCGGAGCA---GGGA--------CTTCTCCAACTTCTGCAGGACGATGAAGATGATGCCAGCATGGCTGCTGAGAAACTGCCAGGTCTGAGCAATCTCATATTCAAAGATACACCAGCGGCTTTGGATAAAGTGCTGAGACACCACAACGATAACCTTCCGGCTTTT----GTGAAAACCTTCTTGGATGATGTTGGCAGCAATGGCCACACCCGGAATAAAGTCTCTGTAGTGAAGGCAGAGCCGAAAGGAGGGCACCCCTTCTTCCAAGTTCTTTACCAACTCATTCCTCACCCAGTCGTCATCTTGGCTTGAGTAGATGACGAAGGCATCATAG

a score=6219
s chr3           83958184 447 + 160039680 GGTGCCTG-AAGCACACGAAATTGTTGTCTTTCAATGGGTAGATTTTAAC----------AGTGTCTCTTAGACATCAGTAATATGTATCAGAATAAGCTAAAATGCAAAGAGAAAAAATGGT--AGAAAGGGAAGCACAGGTCAAA---CTCTCCTTTTGCG--------------AATGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATAT--AATACAGCTTATATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTTTTTAATGTTCTGTATTTCATATTAGAGATGTTCAACCT
s HiC_scaffold_1 74725721 446 + 233722169 GGTGCCTCCAAGTACATACTAGTGT-GTTATTCAatgaggaaatttaaaataaacatgtaagtgTAATTTAAGAGATGGAAACATTTCT--GGATATTCAAAAAGACCCATATTAAGGATAGTCTAAAAATTCAAGGACAGGTTGAGTATCTCTTATTCTGAGTAACTCTCATCCAAAATTCTTGgaaccagaagtgtttcagac-----------------tTTGGAATACTTTCATATACATAATAAGACATATTTCAGAGGAGAGCCAGGTCTAAACATGAAGTTCGTTTATA--TCATACACACATCACCCTGAAGGtagttt-tatacaatat-tttttagtatgtatatatttagacTTCAACCAAAAACATGAGATCAGGTGCAAAATTT-CCACTGTGG-CATCAGGCTGGTTCTCAAgaagtttcacattttt---aaattgggAAT----TATTGAAGATTTTCAGACT

a score=8296
s chr3            83958309 326 + 160039680 CAGGTCAAACTCTCCTTTTGCGAA-TGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTATATACA---GAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTT--------TTTAATGTTCTGTATTTCATATTAGAGATGTTCAACCTGTAT
s HiC_scaffold_1 153152992 332 + 233722169 CAGGTTGAATAGTCCTTATCTGAAATGCGTGAGACCAGTAGTATTTTAGATTTGgagttttt--ggattttggaatatttgcatacatGTGATAAGACATTTTGGGGAGGGAACCCAAGCCTAAACATGAAATTCGTTTGTGTTTCATATGTATACTATAT-ACATAGTCCAaagatgtttttatatttatgtagtgTGCCTAGTTTGACTGAATCTTGTTGTCTGAGGT--CTCATCGAATTTTGTACTTGTAATTTCATACTGGTGCTTAAA-AATTTGGAATTTTGGAGCACCTTAGAGGTTGGATATTTTGGATTAAGAATGCTCATCCTGTAt

a score=5739
s chr3            83958332 284 + 160039680 ATGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCT-TTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTATATACA---------------------------GAATATTTTTGGTGTGTCTGTGTTCT-AGTTGTAAGTAAGT-ATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTTTTTAATGTTCTGTATTTCATATT
s HiC_scaffold_1 221976106 312 + 233722169 ATGTTTGGGACCAGAAGTATTTTGAATGTCTGATTTGTTTTGGATGTGGGAATATTTGTACACATATAATTCAGTATCTTGGGGATGGAGCCCTAATCTAAACAGGAAACCCATTTATGTTTTACATGCACCTTATAC-ACATAACCTGAAAGCAAGCCGGGGAAGGATTCCTCCGTGAGCTGGATCCCACTAGTGCACCCGCATTTTCACATATGCCAAGGTCACATAAGGTCAGGCATGGAATTTTCTGCTTGTGGCATCATGTTGATACTCAAAAAGCTTTGGG-TTTTggagcattttgaattttgcatt

a score=4418
s chr3            83958339 305 + 160039680 AGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTA--------TATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTT-------TTTTAATGTTCTGTATTTCATATTAGAGATGTTCAACCTGTATCTGCTAGAG
s HiC_scaffold_1 131684859 295 + 233722169 AGGTCAGAgatgtttta----taattctttttcagattttggaatacaCACACA---GTCATGAGATATCTTGGGCATGGGAACCATATCTAAGCATGAAATTCATCTCTGTTTCATGTTTGCATTATGC-ACGTAGCCTGAAGTTAACTTTCCACAACATTCTTAGAGCACCTGCATTTTGACTGTGACCTGTTGTAGGA-ATCAGGTGTGGATTTTC---------------TGTcatctttcaaaaaattttggACTTTGGAACATTTCAATTTCAGATATTTAAACAAAGAGA-GGTAAACCGGTAATAGCTACAG

a score=6224
s chr3            83958339 296 + 160039680 AGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTATATACAG--------AATATTTTTG-----GTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAG--------TGTGGAGTTTTTTTAATGTT---CTGTATTTCATATTAGAGATGTTCAACCTGTAT
s HiC_scaffold_1 229906026 310 + 233722169 AGATAAAAAGTACTTCAAatactagattttttaaaatttcagaatccTTGCATATATATCGTGACGTATCTTAGTAATGGAACCCAAGTCTAGACACAAAATTCACTTATGGTTCATGTA-AGATTGCAC-ACATAGCCTAAAGACAGTCTTATACAATATTTTAGAGCACATGCTTTTGATTCCCACTTGC-------CACATGAAGTCACATATGGAATGTGTCATTTGTTGTACCACGTCAGTGCTCAAAAAATTCCAGATTGTGAAACCTTCTAGATTTCAGATCGTGTTTCA-ATCAATGATGCTCAACCTGTAT

a score=6707
s chr3            83958365 262 + 160039680 TCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTATATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTTTTTAATGTTCTGTATTTCATATTAGAGATGTTCA
s HiC_scaffold_1 154109085 247 + 233722169 TTTTCTTAGATTTTGGAATATTCACCTACATATAATGGCATATGTCAGTGTTGAGATTCCAATCTAAACATGATGATTGTTTATGTTTTATGTGCACAGGCTGAAGGTAA--TTCCATGCAG--TATTTTTAGTGTACCTATACTTTGACTATAACTCATTATATGAGGTCAAGTGTG-AATTTTCTGCTCATGGAATTACACCAGCACTCAAAAA----------CTTCAAACTTGGGGCTTTTTGGATTAGAGATGTTCA

a score=6339
s chr3            84051360 381 + 160039680 CAGTGAACCACTGTCTAGGGACTCTGGGGAAATAATTGGATCATGATGGCTCTGACCTCGTGTACAGATTAGTTCATTGATGGGTTCATAATTTGATAG-ACTg--tgg-----tggaaacttgggagatgg-acctagttgaaaggactaggcc-------------cttgggg--------------acaatagct---gtcctctgtccctcattctgtttttctgctt---tccaggatgccatgcgaccatc-agctctgctctttgac---------gcatgcaatctcttc-atcacactct------------gcctca---------tgacaaacaagagctcagggcc---------aatgggtctaaacctccaaaatcctccaccaaaataactatgtcttcctttaagtc-attttctcaggcactttgtcacagc-atgaaaaggtgacTAA
s HiC_scaffold_1 154788958 466 + 233722169 CAGCGATGTGCAGCCTTTGGGCTTTTGGAAAGCAGTTGGATCATGATGGCTCTGACTTTATCAAGGAATTAATCAATTGATAGATTTGTAATTTGATGGTATTGCCTGGGACTTTAGAAATTTAAGGGATGGAACCTAGTTGAAAAGAGTAAGTCAAGACAGCGTGTTCCTGGGAATTACCTCTTATCCACAAGTgcttcctccctctgtctctttgtctctgtctctgtttatctctgtcagtctgtctgtctatctttctCTGTCCTTTTGCTGTCATTATGTGAGTAATCATTTCAACCACATTCTCTTGTTCCTGCAGCCATAGTATTCTGTTCAAAAACAATGAAGCAAGACCCCACATGATCACaaattgaaacttctgaaactatgagccgAAATACAATTTTACTCCTTTCTGTTGAttctctcaggtattttgtcatagtggtgaaaaactaacaaa

a score=3991
s chr3           84457716 77 + 160039680 CCTGCTAAGGTGCTAGAGGCTCAGTGCTAGATGCTCGGTGCTAGATGCTCGGTGCTAGATGCTCAGTGCTAGATGCT
s HiC_scaffold_1 47327763 73 + 233722169 CCTGCT----TGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCT

a score=3838
s chr3           84457734 66 + 160039680 GCTCAGTGCTAGATGCTCGGTGCTAGATGCTCGGTGCTAGATGCTCAGTGCTAGATGCTTGGTGCT
s HiC_scaffold_1 47327770 66 + 233722169 GCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCT

a score=4102
s chr3           84457740 66 + 160039680 TGCTAGATGCTCGGTGCTAGATGCTCGGTGCTAGATGCTCAGTGCTAGATGCTTGGTGCTTGATGC
s HiC_scaffold_1 47327769 66 + 233722169 TGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGC

a score=3560
s chr3           84457747 59 + 160039680 TGCTCGGTGCTAGATGCTCGGTGCTAGATGCTCAGTGCTAGATGCTTGGTGCTTGATGC
s HiC_scaffold_1 47327769 59 + 233722169 TGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGCTGGATGC

a score=15851
s chr3            84552845 621 + 160039680 ACAGAGCTTTTATTCAtcttcttcctcttcctcttcttcctcttcctcctcctcctcctcctcttccacctTTATCCGGGCAACTTTAGCAGGCCCCTT-GGCCCCCTCAAACTTC--CCTTTAGACTGACAGTCAGCGACACCCTTCTCATGCTTCTCCTTCAGCTTTGCTACCT--TGGTGACGTAGGCTGCTTTTCACTCT-------CACTCAAGT--TCTTCCACATCTCACCCAGATTTTTTTGCCACATCGCCAATGGAGATGCCAGGGTTTGTGGATTTGATCTTGGGTAGGAATTTGGAGCAGAATAAGAAAAATCCAGATGGAGGTCTTTTGGGGGCATTTGGG----TCCTTCTTCCTCTTGCCTCCTTTAGCTGCTACATAATCTTTCATCTCCCAATCATAGCTTACTTTATCTGACTTTGCCATTTCATCAAACTTTGATTTCTCTTTGCTAGACCTCTTGTCTTCCACCTCTCAGAGCACTTCTTGGAAAACTCCGCAAAATTGACTGCAACCTCTGGGT-TTTCTTCTTGTGTTCTTCTCTGCATGTCTGTGTGAAGAAGGCATAAGCAGACATCTTGCCCCTTGGTTTCTTGGGGTCACCTTTAGCCATCCTGACTGTATTGT
s HiC_scaffold_1 116832048 616 + 233722169 ACAGAACAGCCACTCGTTCTTATCAtcatcttcttcctctcctcctcaaTCTTCTGGTTCATATTTTGAGCCTATTGGG------CTATCAGGACTCTTCTTTCCTCCTAGACTTTTGCCGTTGGCATGATATGCAGCTATATCCTTTTCATATATCTCTTTTAGCTTAGCTGCTTGTTGTTCATATAG----TTGTTTACCTTGGCTGACTGCTCAGACCATATTTCATCTCCCACCTTTCTTTTTCATCAGTATCTCCAATGGACAGGCCTGTGTTCACT--TTTGATCTTTGGGCAATAttcagagcaaaacagaaaaaagaaagatggtgGTCTTTTAGGAGCatttaggaaatttttttctctcatcacCATTTTTGGGAGGACCATAATTTTTCACCACCTTGTCATAGCAAGCTTTATCACTTTTTGCCGTATCTTCAAACTTCAACTTTTCCTTGGCAGACAT--GGTCTCCCATCCCTCCAAGCACTTCTTGGAAAACTTCACAAAGTTGACCAAGGAGTCAGGGTGCTTCTTCTTGTGCTCCTCATAGCAGGTCTACACAAGGCATACA-AGGCATACACTTTGTCCCATGGTTTGTTGGGGC---------CTATCCTGACCATGATGT

a score=24072
s chr3            84912861 592 + 160039680 ttcctttttcctttcc----------tttttcctttcctttttTC-------TGGCTCTTTTCAGTTTATTGCATGAAGGAGTTACACTAGTCCAAGTTAAAAGCAGACCCCAAATGATTACATTATACAAGCTGTGAGGTTTTTAAACTTGTGACAAGGGACAGAAGGGAAATTCTACTCATTGCAAGGAAATCCTCGCTTAAGCTTCAGAGAGCCACAAGCACTTAAAACCCATGAGCCTTCAGCTGATCGTCCTTAGCCAGCCCAGTCTCTATCAGGACCTGGCACATGTTCTTGCGCTGGTCACCCTGTAGCTGAATTACTTCTCCATATTCTGGATGCTCAATTACAGTACCATTGCAGGCAAA-TTTCTTCTTAAACACCTTCACTAGTTTCTTTTTATCGTAATCATCAGCGATCCCTTGGACAGTGGTAAGGGTCTTCCTGCCCTTTCTCTGTTGAGTTCTTATATGGA--TATAATCCTCAGAGCCAGCAGGATGCAGGTCATCACCCTTACTTACTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCAGACATACAGTACGATTCCTTTTCCTCAGTGGAAATGGCCTGCg
s HiC_scaffold_1 133550924 521 + 233722169 ttactttttactttctaaatataaatttatttatttatttttgtagataGCATGGCTCTTCTTAGTTTCTTGC-TAAAGGAGTTATACTAGCCCAAGT-GAAAGTGGACCCCAAATGGTTACATTATGCAAGCTGTGAGATTTTTGAACT-GTGACAGGGGACTGAAAGGGCATTCTACGCACTGCAAGGAAATCCTCTCTTCACCTTCCATGAGCCACAAACACGTAAAACCCACAAACCTTCAGCCAGTTGTCCTTAGCCAGTCCAATCTCTGCCAGGAACC-GCATAGGTTCTTATGCTGGGCACCCTGGCGCTGAATTACTTCT-CATATTCTGGATGCTTGA-TGTAATGCCGTTGCaggcagatttttttcttaaatacctTGACCAGTTGCTTTTTATCATAATCATCAGTG-----------AATGGCA-------------------------GGATTCTTATATGACATCATCATCCTCAGTGCCAGTAGGAAGT-------------------------------------------------AGGTTCTTAGTAGCAGACGTACGATAAgattccctttccttgttggAAATGGCCTGTG

a score=39568
s chr3           84912877 717 + 160039680 tttttcctttcctttttTCTGGCTCTTTTCAGTTTATTGCATGAAGGAGTTACACTAGTCCAAGTTAAAAGCAGACCCCAAATGATTACATTATACAAGCTGTGAGGTTTTTAAACTTGTGACAAGGGACAGAAGGGAAATTCTACTCATTGCAAGGAAATCCTCGCTTAAGCTTCAGAGAGCCACAAGCACTTAAAACCCATGAGCCTTCAGCTGATCGTCCTTAGCCAGCCCAGTCTCTATCAGGACCTGGCACATGTTCTTGCGCTGGTCACCCTGTAGCTGAATTACTTCTCCATATTCTGGATGCTCAATTACAGTACCATTGCAGGCAAATTTCTTCTTAAACACCTTCACTAGTTTCTTTTTATCGTAATCATCAGCGATCCCTTGGACAGTGGTAAGGGTCTTCCTGCCCTTTCTCTGTTGAGTTCTTATATGGATATAATCCTCAGAGCCAGCAGGATGCAGGTCATCACCCTTACTTACTTGCATCAGCAAAGGGGTCGAAAGAGTGGAGGTTCTGGATAGCAGACATACAGTACGATTCCTTTTCCTCAGTGGAAATGGCCTGCgggagaaggcgggtggcggggcgggggg---gggggggggggcg-gagcgtcgggaagcgagggggctcgagggggaggCAGCT-------GAGTCCTTGGCGGCGGCTCAGTGACTGGGGCTAGACtgttttcttagcaatgttgtttttca
s HiC_scaffold_1 68088360 707 + 233722169 ttatttctttatttttttatggctCTTTTCAGTTTATTGCATGAA--AGTTTCACTAGTCCAAGT-GGAAGTACATTCCAAATGGTTACATTATACAAGCTGTGTGGTTTTTAAATTTGTGGCAAGGGATTGAAGGGGCATTCTACTCATTGTAAGAAAATCCTCACTTAAACTTCAATGAGCCACAAGCACTTAAAACCCATGAA-CGTCTGCTAATTGTCCTTAGACAGTCCAATCTCTACCAGGAACTGGCATATATTCTTGTGCTGGTCACCCTGGAGCGGGATTACTTCTCCATACTATAGATGCTTAGTTACAGTGCCATTGGGGGCAAATTTCTTCTTAAATGCC-TCAccagtttctttttatcttaatcATCAGCGATCCTTTGGATAGTGTTGATGGTCTTCCTGCCATTTCTCTGTTGAACTATTACATGGATACAATTCTCTGTGCTAGGAGGATTCAGGTCATCAC----ATTTACTTGCACTAGCAAAGGGGTCGAAGGAGTGGAAGTTCTGGATAGCAGACATGTGATATGATTCCTTTTCCTCCATGGAAAT--CCTGC---AGAAGGTAGCTGCAGAAGAAGGCAGTTTGGGGTAAGGATCGCCATTGCTGGGAAGC-AGGGGAATC-AAGGGAAGGCAGTTTCATGTCAGCTCCTCCTTGGCAGCTTAATGACTGGG----CAGTGTttccat-ttagttttgtttttca

a score=21150
s chr3           85152031 700 + 160039680 CATGGAAAGCTATGCCAGGGAGCTTTCCTTTCAGTTCTGAGATGACCTTGCCCATAGCCTTGGTAGTGCCAATGGATGCAGGGATGATGTTCTTGGAGGCCCCATGGCCATCACACCACAATTTTCCAGAGGAACCATCCACAGTCTTTTG-GTGGCAGTGATGGCATGGGCTGTGGTCATGGGTCTTTCCATGATGCCAGAGTTGTCAAGGATGACCTTGGTCAGAGGAGCTAAGCATTTGGTAGTGCAGTGAGCATTGGTGACAATCTTGAATGAGTTGTCATACTTCTTATGGTTCACACCCATCACAAATGAGGAACATCAGCAGAAGGGTCCAAGATTATGATCCTTTTGGATTCACCCTTCAAGTAAGCCCCAGCCTTCTAAATGATGGTGAAGACAACAGTAGACTCTACAACGTATTTGACAGCAGCATCACCCAATTTGATGTTGGTAGGATCTCATGTCTGGAAGATGGAAATGGCCTTCCTGATGATGACAAATTTTCTATTCTCAGCCTTAATTGTGCTGTGGAACTCACCATGGGTAGAATCATACCAGAACATGTAGGCCATGTAGTTGAGGTCA---AAGAGGCCATAGAAGA----------------------GTTGAAGGCAATTCTGATAACGAGGCACCTCAAAAAGCCAAATCCATCTTCCCTGACCTT-----------------------------CACGAGAAGATAAAGCTGTCTCTGGGATGGAAAGGA
s HiC_scaffold_1 97937169 725 + 233722169 CACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCA------GCATAG--GATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATA-AATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGCCATGAAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=16628
s chr3           85152069 678 + 160039680 GAGATGACCTTGCCCATAGCCTTGGTA-GTGCCAATGGATGCAGGGATGATGTTCTTGGAGGCCCCATGGCCATCACACCACAATTTTC-CAGAGGAACCATCCACAGTCTTTTGG-TGGCAGTGATGGCATGGGCTGTGGTCATGGGTCTTTCCATGATGCCAGAGTTGTCAAGGATGACCTTGGTCAGAGGAGCTAAGCATTTGGTAGTGCAGTGAGCATTGGTGACAATCTTGAATGAGTTGTCATACTTCTTATGGTTCACACCCATCACAAATGAGGAACATCAGCAGAAGGG--TCCAAGATTATGATCCTTTTGGATTCACCCTTCAAGTAAGCCCCAGCCTTCTAAATGATGGTGAAGACAACAGTAGACTCTACAACGTATTTGACAGCAGCATCACCCAATTTGATGTTGGTAGGATCTCATGTCTGGAAGATGGAAATGGCCTTCCTGATGATGACAAATTTTCTATTCTCAGCCTTAATTGTGCTGTGGAACTCACCATGGGTAGAATCATACCAGAACATGTAGGCCATGTAGTTGAGGTCA---AAGAGGCCATAGA----------------------AGAGTTGAAGGCAATTCTGATAACGAGGCACCTCAAAAAGCCAAAT-----CCATCTTCCC---------------------TGAC------CTTCACGAGAAGATAAAGCTGTCTCTGGGATGGAAA---GGAGTAGAGAGCTACCTTT
s HiC_scaffold_1  9527713 696 + 233722169 GGAATGACATTGCTTACAGTGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTCTCAGGAGAAGGGGCTCCAACATTTATATACTTTAG--------------------------TTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAA-GGAGTGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGCTGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAATTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAGTTGAGGCAGGGACACATCTTT

a score=4517
s chr3           85486734 224 + 160039680 AGGCTATCACCAATCACtgtggttcaagtagcaagcgtcctccccaggcccttgtgttagatggggacttggttaccagctga-----tgacAAGTGATGGGTGGGATCCTGAAGGCTCTGAGTTAATCAATGGATTAATGCACCGATTGATTCATAGTGCAACAGCATTATTGGAAGGTGGGGGAAAGAA--GAGGTGAGGCCTGGTTGGGAAAAGTAAGCCACAGAAAG
s HiC_scaffold_1 20746957 224 + 233722169 AGACCTTAGCTAAGTGCTATGGTTTGAATCTAAAATGTTCCCAGAAAAGGTTCATGTTT--TGGAGGCTAGGTC-CCAGATAAGtttttagaaggtgattgg----atcataagAGCTCTAATTTAATCAATACATTAACCCACTGATATATTCATAATTTGATAACGTTATTGGGAAGTGGTGAAAAGTGTTGCACTTACAGCTAGTTGGAGGAAGTTCATCACTGGAAG

a score=4358
s chr3           85486834 304 + 160039680 GATCCTGAAGGCTCTGAGTTAATCAATGGATTAATGCACCGATTGATTCATAGTGCAACAGCATTATTGGAAGGTGGGGGAAAGAAGAGGTGAGGCCTGGTTGGGAAAAGTAAGCCACAGAAAGGATATCCTTAGGAGCTACACCTTG--CCATGCCC--------GCCCCTATACTGCTTTCCTGGTCCCCAGCCAT------------GTTTTATTGGCCCACTTCATGTtgcctccccactgtga-----------------------------------------tggactgaaagcgtgagatacacaaaccttttctccttttcctcctctttgtcagggatctcatgtcagtgataagaa
s HiC_scaffold_1 65568629 352 + 233722169 GATCATGAGGACTCTATCTGCATCAGTGA-------CATGGATGAGATATTAATTTGATAGCATTATTGGAAGGTAATGGACAAAGGAGGTGGGGCTCAGCTGACAGGAGTGATCCTTAGGAGTAATGACCTTCAGGACTATAGCTGGTTCCTAGCCCTTTATCtagctcttcctctttctctctgcttcttggccaccatgaaACAGGAAGTTTCCTGCCTCAATT-------CCTTTCCACCATAACGATTCTGATTTATcacaggcctaaaagcaatgaAACTACTtggactgaaaccgtgagccaaaagaaacctttc-cttcttcaatTAGCTTGTCAGATATTTttttacagtgacagaaa

a score=5647
s chr3            85545561 397 + 160039680 GCTGACACCTGTCTAACAA--GACAGATTAACAACAGAAGAACTGAACAAATG----TTCTCAAAGTTTTATGTGACCTGAGAGTCTCCAAAAATTAACGCTGAAAGGCTCAGGGAAAGCTG--CATTT-TATGCTAAG-TCTGATGAAACATATGGATGGTTATAGAGAAACATGATTGGACAGAAATA---TGCCCTATTGATAATAAACTGGGC------ATGCAG-AGACTCTCTTCAAGGGCTCACTATTCATACCCTTTTCTTGGTCTCTGTAAGACATTCCTACACCCTGTGTATGAAGCAGGACAACTTGGGCCCTTTAG---------------AGTGACAGACGTCAGAGGGC------TTTCCAAGTTTTATGACTTGCTTTGGGGAGATCTATCCTAGTTTCTATGAC-CAACTCAGTGGGGATGAA
s HiC_scaffold_1 221043995 427 + 233722169 GCTGTCACCCTTATAACAAAAGACAGATGaactacagaaaatcaaaacaaattcatTTCATCACAGTTTTATGTGACACAGGACTCTTCAGAAGAAAGTTCCCCAAACTT-----AGAACTGTTCATTTATATGTTTGGATCTGGTGGGT--GATGGATATCTGTGTAGAAATGTGACCGGACCAAGACAGTCTGATCCAATATTGATAGACGTGGCCTCTCCGTGCAGCATTCTTTCTTCCAAG--TTATGGGCCAGGCTCCTTCTGGAATCTATGTCTTACGATCCACTATCAGATAAGATAGGTCAGagaattt---ctttttggtttgctCCAAGACACAATAGCAGAGGAAGATTGGCATACTATTTTTAGGTTTTATGACTTACTTTGGGGAAACACATTCTAGTTTCTATGACTCAGTTTAGGAGAGAGAAA

a score=4990
s chr3            85615288 121 + 160039680 acTGGGAAACAAAAGACAGAGGGAAGT----ACCAGAGTTCCACAATATCCTTTAAGGGCATATCCTAATGGCCCAAAGGCCTTCTACTGGGCCCCATCTCTTTCTAACACTTTTAATGTTTCTA
s HiC_scaffold_1 122719687 122 + 233722169 ACTAAGaagcaaaggagagaaagaattGGAGACTAGAGTCCCACTATCCCCTTTAAGGACATGTCCCCAGTCCCTAAAGACCTTCTACTAGGCCACATCTC---CTAAAATCTCCATGGCCTCTA

a score=3635
s chr3           85704406 202 + 160039680 tgtagtttaatataaaatgtc-ccctgaaggctctgtgtgttgatatcccagctgatggcacttttgagaagtAACTGGATCAT---GTGGGCACCTAACTTCACCAATGAAACTCATCTCAATGAGTTAATCCATTGAGATGTTCATAGGTGAATGGGCTACTGGGAACAGGGCTGGATGGAGGAAGTAGGTCACCGGAGGCACG
s HiC_scaffold_1 88567010 174 + 233722169 TATGGTTTACAGTTACATGTTGCCCCAAAGCCTTTGCA----------CTAACAAAtgtggcttttcagaggtgat--gATCACAGGGTGTGAGCCTAG--------------------TCAGTGGATCACTCCACTTAGGAGTTCATAGTTAATGGTGATTTTGAGGTGAAGGCTGGTTGGAGGAGATGGATCGCTGGAGGCACG

a score=22922
s chr3           85914583 537 + 160039680 TTAAGAAAAAAACAATTTTTCTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGG-CTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCA-CCAGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTG-CAAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAGCC--AGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACC----CAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGG-AGCTGAGCTGCTGAAGCCCATTCCATACTAATTCATGGCCTAA
s HiC_scaffold_1 18289625 539 + 233722169 TTTAAGAGGAAACAAC----CTTTTGGCTAGAACTGTCATCTTCCAGTAATTTTCCAAAATGACAAACACAAAGAGAAAGGGGACAGAAACCCAATACATTTTGTTTAGGCCTTTTAGACAAAAATGGGGCTGTTCCTTTGGCCACATACATGCGAATCTACA--AAGAGTGATATCGTAGACATCAAGGGATTGGTTC-TGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAGGGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGAGCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatgatcagaaaaagaagaaagccaaAGAGAAAGATACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACTTT-TGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=24298
s chr3           85914584 532 + 160039680 TAAGAAAAAAACAA---TTTTTCTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCA-CCAGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTG-CAAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAGCC--AGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAGCT-GAGCTGCTGAAGCCCATTCCATACTAATTCATGGC
s HiC_scaffold_1 60922470 539 + 233722169 TAAACAACAAACAAACTTTTGCCTTTTGGCCAGAACCACCATCTTCCAGTAATTTGCCAAAATGATGAAgacaaagggaaagaggaggggacCCTGGTGTATGTTGTTTAGGCCTTTTAGAAAACACAGGGCTGTTCCTTTGACCACAGACATGCGAATCTACAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAAGAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACATTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGT-GAACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGGC

a score=21843
s chr3            85914619 482 + 160039680 CCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCA-CTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCAC--ATCCATGTGAATCTACA-AGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCACC-AGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTG-CAAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAGCC--AGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAG-CTGAGCTGCTGAAGCCCATTCC
s HiC_scaffold_1 174026041 485 + 233722169 CTGTCTTCCAGTAATTTGCCAAAATGACAAacacaaagggaaagaggagaggaatcCAGTTATATGTTCCCTAGGCTTTTTAGAAAGCATGAAGCTGTACCTTTGGCCATGTATATATGTTAATCTACACAAAAAGGTGATATTGTGGACATCAAGGGTAAGGATACTGTGCAAAAAGGAATGCCACACAAATGTTACCATGGCAAAACAGGAAGAGCCTACAGTGTCACCTAGCATGGTGTTGGCACTACAGTAAA----CAAGTTAAAGGCAAGACACTTGCCCAGAGGATTAATGTGCATGTGGAGCATATTAAACACTC--AGCGTTGGGATAACATCCTGAAATGTGTCAAGGAAAATGatcaggaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCC

a score=15821
s chr3           85914625 552 + 160039680 TCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCACCAGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTGCAAGAGAACT-GATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAG------CCAGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAG-CTGAGCTGCTGAAGCCCATTCCATACTAATTCATGGCCTAACGCATAAAATAA----------AGGACCTAAATTGTAAAATGTTTTCAAAAAAAAAAGAATCTAGTA
s HiC_scaffold_1 18806921 543 + 233722169 TCTGGTAACCTGCCAAAATGACACACATGAAGAGGGTAAAGAGAGCTATTGATT--GTGTCTTCTAAGCCTTTTAGGAAATATGAGGTTTTTCCTCTGTTCACATATATGTGAATCTACAAGAAAGGCGATAATTTAGAGATTAAGGGAATAGatactgttcaaaaagaaagtcCCTATAAATATTAATGT-GCAAAACTGGAAGCCTCTATAG------CAGCACATTGT---------TGTAAACCATCAGATTAAGGGCAAGATATTTGCCAGGTGACTAAATGTGTATATTTATCATGTGAAGCA--CTAGGAGTCAAAATAGTTACTTGAAACacataaagcaaaa----ttaaaataaaaggtagaaaatCCAAGAGGAACTTACCTGGGTTCAACAGATGCACCAGTCTGATCTGCTCAGTGAAGCACATGTTGTCAGAATTGATGGAAAGAAGCCTGAAATACCTAAATCTATTCCCTATGAACCCACAGCATagtagatgaaaaaaaaagagagagagagactaaactataaagaa---acaaacaaaaaacactttacTA

a score=5569
s chr3           85914633 124 + 160039680 CTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATA
s HiC_scaffold_1 52267556 121 + 233722169 CTTGCCAAAATGATGAACACAAAGGCAAAGAGGAGGGGAACCTGGCGTGTGTTCTCTAGGCCTTTT--AAATCAT-GGGTTGTCCCCTTGGCCACAGACATGCAATTCTACAAACAGGGTGACA

a score=15602
s chr3           85914743 358 + 160039680 CAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCACC-AGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTGC-AAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAGCCAGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAG-CTGAGCTGCTGAAGCCCATTCC
s HiC_scaffold_1 52267816 341 + 233722169 caaAAAGAGTGATTTTGTAGACATCAAGGGACTGTGCAA-------AAAAGAATGTCACACAAATGTCACCATGGCAAAACAGGAAGAGTGTCCAGTGTTACCCAGCATGCCGCTGGCACAGCTGGAAACAAGCAAGTAAAGGGTAAGACACTTGCCAAGAGGACTGATGTGTGTATTCGGCATATTAAACACTGGACAAGTCGCGACAGCTGCCTGAAACGTGCCAAGGAAAAGGATCTGAAAAAGAAGGAAGCC-------------TGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC

a score=5938
s chr3            85915818 319 + 160039680 GATGAAGGTCAGGGTTCTAAGTTTATTCGGAAAGCTAAGGAGACACTGTTTGTCCCCATTGGAATGGCGGGCTTTGCAGCGATTGTTGCCTATGGGTTGTACAAGCTGAAGAGCAGAGGAAATACAAAGATGTCCATTCACTTGATCCACATGCGTGTAGCAGCCCAGGGCTTTGTTGTGGGGGCCATGACTCTTGGTATGGGCTACTCCATGTATCAGGAATTCTGGGCCAACCCTAAGCCTAAGCCTTAGAAGAG------CTGGTGGCATGGGAAGTGCTTGCTTTAGTTAGACGTCTCATATTGAGGTTACGTGTTTGTAT
s HiC_scaffold_1 129102472 296 + 233722169 gataaaaatcagaaatacagaATTGTCCAAAAATCTCAAGAGGTGCTGTTTGTTTCAA--------GTGGGATTTATGTTGATTCTT-TTAATGGGATATACAAAGTGAAGAATAGTCAAAGTAGTCACATATCCATTCACGTGACCCACACAGGCATGGCAGTCCTAAGCTTTATT-CAGTGATCAAG---------AGGGACTGTCGAATGTATTGGGAATAGCAGACA------AGACCCATATTTTAGAAAAGTGCTATCCAGTGGTGCTGGTAGTGCTTTCT----TTTGATGCTGTGTATTAAGAATGTATGTTTATGT

a score=9079
s chr3           86113838 266 + 160039680 AAGTAGGTGTTTAAATGGGTTTTTTTTAAAAAAATAGAGATTTTTATTTCCTTTATTGAAAAAC--AAGTCTTGGGTACATCAAAACCAATTTCTGGAATGGGGGGCAGGGGAACAGAACCCACAATAGAAAAAAAAATTATCATCTGGGCCACAACAGAACCCAGAGAATATGTTCTTATCATTAAAAAATTCTAGGTGCTTCATAATTGACCTTCTGATACAAAATGGCCTATTGAATTGGCAACT--TGATTCTTGGTGTGGAGGTC
s HiC_scaffold_1 82477031 242 + 233722169 AAGTAGAAATTTATGCTAgcattttt-------atacagattttg---ttctttattgagaaatttaagagttaaatatat-aaaactaatttCTTGG----------GGAGATCAAAACtcacaatagaaagaaaaa-------actgcCCATACTAGGACccagagaatatatttttataaacagaaagCTCTAAGTACTTCATAATTGACCTTTTGAGACAAAAAGACCTATTTAATTTGTAACTTGTGGTTTTCAGTGATGAGGTC

a score=7687
s chr3            86137944 166 + 160039680 TCACAAATAGGACTTTTTATTTGTCACTATTAAAAATCTGGATTTTACACTGATT--CTTGGACTGGCGGTTCATATCCGTCAGCTCGCTCAACCTTAGCACCCGTCTCGTCTCCAGCTGCTTTGCCAGAGCTGCCGCCTTCCCCATGCAGCTCCATGAGCTTGCCCA
s HiC_scaffold_1 127401860 161 + 233722169 tcacaagtaaaa--ttttatttat----atgaaaaatctGGATTT-AAGCAGATTTGCTTGGCCTGGTGGTTCGTATCTATCAGCTCATTCAACTTTAGCTCCAGTCTCATCCCGAGTAGCTTTTCCAGAGCTACTATCTTCACCATGAAGCTCCGTCGGTTTTCCCA

a score=10103
s chr3           86137945 165 + 160039680 CACAAATAGGACTTTTTATTTGTCACTATTAAAAATCTGGATTTTACACTGATTCTTGGACTGGCGGTTCATATCCGTCAGCTCGCTCAACCTTAGCACCCGTCTCGTCTCCAGCTGCTTTGCCAGAGCTGCCGCCTTCCCCATGCAGCTCCATGAGCTTGCCCA
s HiC_scaffold_1 67093082 161 + 233722169 cacaaGTAGGA---TTTATTTATCACTATTAAAAATTTGGATTTTGAACAGACTCTTGGACTGGTGGTTCACATC-ATCAGCTCGCTCAACTTAAGCTCCAGTCTCAGCCCCAGCAGCTTTTCCAGAGCTACCACCTGCACCATGAAGCTCCATGAGTTTTCCCA

a score=11279
s chr3           86139038 212 + 160039680 CAGTTTATTAACTACTTCCTTCAAGTCATTAGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATCTGGCGGACTTGCTGGTGCTGCGCATAGGATGTCTTTCTTATCTGGTTGTTGCGTTTCTTAGTGAAGCCAACACAGAAAAGTCGGAGCAAATACCCATCGGTCGTCTTGACATCAACGTGAGCTTCGATCATGGTCT
s HiC_scaffold_1 67093351 206 + 233722169 CAGTTCATTGATCACTTCCTTCAA----TTTGTCCGCATCTCTCCGATTATGATTTCCATTATCCTTTTTCAGATTTGGCGGACTTGTTGGTGCTGAGCATTAGAGGTCTGCTGTGTCTGATTGTTGCACTTTTCAGTAAAGCCAACACAGAACAA-AAGAGCAATTTATCATCTGCAGTCTTGACATCAACATGAGCTTC-ATCATAGTCT

a score=13370
s chr3            86139038 212 + 160039680 CAGTTTATTAACTACTTCCTTCAAGTCATTAGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTC---CGGATCTGGCGGACTTGCTGGTGCTGCGCATAGGATGTCTTTCTTATCTGGTTGTTGCGTTTCTTAGTGAAGCCAACACAGAAAAGTCGGAGCAAATACCCATCGGTCGTCTTGACATCAACGTGAGCTTCGATCATGGTCT
s HiC_scaffold_1 127402123 215 + 233722169 CAGTTTACTGACCACTTCCTTGAAGTCATTTGTTTACACCTCTCAGGTCATGATttccatcttcttcttcttccagaCTTGGAGGACTTGTTGGTGCTGAACATAAGAGGTCCTCTGTATCTGATTGTTGCATTTTTTAGTATAGCCAACACAGAACAAACTAAGCAAACAACCATCAGTAGTCTTGACATTGACGTGAGCTTTGATCATTGTCT

a score=8370
s chr3            86141223 202 + 160039680 AGCTTTTGGTCTCACCTGCCACTTCTTGACCATGGAGCACATTTTGTCCCGGGTAAGATCCATACCATGGAAGTTAGTCAGACAGTTTTTGCCCTGAACGTCCTCAGTGA----------------------------------------------------------------------------------------------------------------------------TTAGCTTGAATTTTCTAAACGCAACTTCATCATTCTGTAGATCAGCAAGGCTCACTTCAAACACACGACCCTTGAGGCCATCAGAGGCAATT
s HiC_scaffold_1 127402321 322 + 233722169 AGCTTTGATCATTGTCTGCCATTTTTTGATCATGGAACACATTTTGTCACAGGTGAGACCCATGCCATGGAAATTGTTCAG----TTTTTGCCCTGAATATCTTCACTAAAtagcttgaattttttttgtgtgtttttcgttttttttttttttttaatcagtaccagggatcaaactcatgactgtatgcttgtaaggcaggcgcttatgccgctgagctaaatccccagcccctagcttgAATTTTCTGAAGGCAACTTCATCATTCTGCAAATCAGCAAGCCTCACTTCAACCACACAACCTTTGAGCCCGTCAGGTGCAATT

a score=12763
s chr3           86141238 188 + 160039680 CTGCCACTTCTTGACCATGGAGCACATTTTGTCCCGGGTAAGATCCATACCATGGAAGTTAGTCAGACAGTTTTTGCCCTGAACGTCCTCAGTGATTAGCTTGAATTTTCTAAACGCAACTTCATCATTCTGTAGATCAGCAAGGCTCACTTCAAACACACGACCCTTGAGGCCATCAGAGGCAATTT
s HiC_scaffold_1 67093655 184 + 233722169 CTGTTACTTTTTAACCATGGAACACGTTTTGGCAAGGACAAGATCCATGTCATGGAAGTTAG----GCAGTTTTTGCCTTGAATGTCTTCAGTAATTAGCCCGAATTTTCTAAAGGCAACTTCATCATTCTGTAGATCAGCAAGGCTTACTTCAAACACACATTCTTTGAGCCCATCAGATGCAATTT

a score=5963
s chr3            86141697 103 + 160039680 TGGTTCCTTGAGTCCTCGTGACTAGT-GTCTTCCCGATGTTCCTAATATTGAACATGGCTGGAGCTTTCACATCGTACCAGTCTTTCTTAGAAAATGGATCGAC
s HiC_scaffold_1 127402644 104 + 233722169 TGCTTCCTTGAGTTCTAGTAACTAGTTGTTTCTCCAGTATTTTTTATGCTGAACATAGCTGGTACCTTCATATCATACCAGTCTTTTTTAGAAAATGGATCTAC

a score=5135
s chr3            86142507 80 + 160039680 ACTTTCTTCTTAGCTCCCTTCTTGCCACCTTTCGTCAGGCGCTTGTTCTTGCCGACCGCCATGGTGCCGACCGGAGAGCC
s HiC_scaffold_1 127402749 79 + 233722169 ACTTTCTTCTTGGCTCCCTTTTTGCCACCTTTCGCTAGGCACTTGTTCTTGCCTA-CACCATGGTGCTGCTCAGCAGGCC

a score=20805
s chr3            86263241 408 + 160039680 CTGGCTTAGGATGCTGGGAAGCATCGCTGTCTGCTGCTTTGTCTCAGTGTGGCCTGTAATGGTGAAGGTGTCTGCTGCCAGGGATGCCTGAACTTGAGGGTTGTTATAATGGATCCCTGTTCCTTGGTTTGTAAACATGTTCACCTCTTCAATACCAGAGATGTTGTTTACTCCTAACTTCTCTAAGGAGAACTGCAGTTTTT-TTTTTTTTTATCATC-ACTGTTGCTGTTCTGTGAACCACCTTCTTTCTACGAGCAGTTCCTTTCCCACCAATGCGCACTTGTGCCTGCAGTTTGGCGAGTTTCTCCTGGTTCATGATCGTTTCTTTCATCTTGTCGGAGTGGAAATGGGGCCTCATGGGGAACTAAGGTTCATGCTCAGGGGGTCTTGGGCAGACGAGCTAAGATT
s HiC_scaffold_1 167439702 408 + 233722169 CTGGATCAAGCTGTTGGGTAGCAT-ATAGCCAGCCACTTCATTTCAGCATGGCTGGTAATGGTAAAAGTGTTTTCTGCCAGAGAAACCTGAGCTTTTGGGTTATTGATGTGGATAACTGTTCTTTGGTTTGTAAACATATTCACCTTTTCAATACCAGAGATACTGTCTACCTCTAACTTTTTTAATGACAActgaaatttttggttttttttatcatCTGTTGTAGTTGTTCTAGGAACCACCTCATTTCTGCAAGCAGTTCCTTTCCCATCAATGTGCACTTGTAGCTGCAGTTTACCAAGTTTTTCCTGGTTCATCataatttctcttctcttctcagaGCACATCTGGGAAGCTGTTGGGGACTAGAGCTGGTGCTCA-GGGGTCTTGGGCAAACCAGCAGAGCTt

a score=18162
s chr3            86802696 931 + 160039680 AGAAGACAGTAAGAAAAGAATCCT-------GCCTTTCTGTGGTACCCAGGCAGGG-TCTGTATGGCACTGTTCTCT-------------TGTAAAGGAAAATGTTTACAGGATGTCTAGAGCCCTCAGTGTCCTGCAAAGGAAGGAGGAACATGTCCTTAAATTCCTTGCAGCACGATTCTATGGAGATGGCAGCAATCCTGACTTGCAGAT-GAACAGCATGGCAACAGAGGGGATC-TGACGGCACATGTCATAAA-CTGAAGAGAACCTT---CGAGCTCCTGCTGGCAGCCCAGTCAAGAGAAGCC-CTG------TTGACAT-AGCGTTATCTCCTCCAGGACAATGAACTCACAGGCTATGCTGGAGTTTCCTGCTGTCAC-AGAGCATCTCC--ATGGTAGCTACATCGTGCCTGCGGCCTTCACTAACCAGATGGGGGCAGC-TTCCGGGAGTCATGTCTCCTGATATTGTTAGACCCAGAGCTGACCACCAACTCCTCTTAGAAGCATCTTATGTCGGCTTCTTCCTGCCATGGTTTTTTTTTAACAGATGCCCTTGCTGTGCAAACACTGCCATCCAT----ACAACAGAGGAGCTCACT--GTG-------TGTGG-----GGTCT------------ACAAGAGTGGTTCTACCTCCCAAGAG-----GTGGAACAGAGCGGGACATGCCTGACCTCTGCTACCACAGTCATCCTGAAAAGCCTGAAAAGGGTGAGCAGGCGGCTACTGCTGAGAAGGGTATGACCAAGGAAGGATGTCAGGGCAAATGGACAGTGCTAAC-----CCTGAGTTTACTGCTGCTCAGCCTAAGGTAG------------------------------------CTAGTCAG--------------AGGCTGAA-----CAGGCA-CTACAGACGGCTGCTTGCAACTCCCACTGCCCAGG--GTAGAGTAGGGA-GAACCACCACCATGATGCCTT-AGCCATTCTACTGCAGAAGCTTAAACAACATGGGAAGATGAAGGGTGGGAAAGAA---ACTGTTTTCTACAAA
s HiC_scaffold_1 198593118 977 + 233722169 aaaaaaaaaaaaaaaaaaaaacctaaatatagGCTTTCTGTGCTGCTCAGGCAGGGACCCATAAGGCATTGTTCTTGGTTCCCACCATAATTTAAAGGGAAAGTTTCAC--GATGTCCGGAGACCTTGATGTCCTGCAAATGAAGGAGGAGGACATCCTCAAATTCCATGCTGCAGGAACCCACTTAGGTGGCACCAAACTGGATTTCCAGATGGAGCAGTATATCTACAAAAGGAAAAGTGATGGGAT------TAAATCTGAAGCGAACCTGGCAGAAGCTTCTGCTGGCAGCTCGAGCCATAGTGGCCACTGAAAATCCTGCCATCAGGGTCATATCCTTTAGGAACACGGGCCAGCGGGCTGTGCTGAAGTTTGCCTCTGCCACTGGAGCGGCTCCTATTGCTGGCCACTTCACCCCTGGGACTTTCACTAACCAGATCCAAGCAGCTTTCCGAGAGCCACGACT----ATGT-----------------AACACAGATTCTTCT--------------------------CTGC---------------------------GTTATGTGGACATTGCCATCCCGTGCAACAATAAGGGAGCTCACTCAGTGGGTCTGATGTGGATGCTGGTCTGGGAAGTGCTGCACATGCCTGGCACCATCTCCTGGGAACACCCATGGGA-------GGTCATGCCTGATTTCT-CTTCTACAGGGACCCTGAAAAGATTGAAAAGTAAGAACA---GGCTGCTGCTGGGAAGGCAGTGACCAAGGAAGAATTTAAGGGCGAATGGACTGCACGCACCAGCTCATGAGTTGACTGCTGCTCAGCCTACGGTTGCAGACTGGTCTAAAGGCTTGCAGGTGCCTGCTGTGCCCAGCCAGCACTTCCCTACCGAAGACTGGAGTGCTCAGCCAGCCACAGAAGCTGGTCTTCAGCCCCCACCACACAGGCCATTGAGTGGGTAGGAATCATCACCAAGTGCTCTTGAGCTGCT---CTGGAAACATTTCAGCAAAGTGGGAATTAGgttgatagaaaataaaacacgagtttctaaaaa

a score=7424
s chr3           86864437 278 + 160039680 caagaaatcctatataagcTTCTTCTTCGGGAAAACACCAAATGGTGGAGTGGGAGGGCCCGGAGGAC-CCAGGGGCCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGGTAGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAG
s HiC_scaffold_1 92989772 227 + 233722169 caaaaaat---atttgggCTTTTTCATCTGGGAAACACCAAATGG---------------CAGATGACGCCA-----CCAG-----------TGCAGCAGA-------GGGACTT----GGAGGCCCTGGGGGCCCAGGCCAAGGCCACAGCATTTGCAGCATTAATGCTGAGGACAATAAG-------ATTCCTATGACCAAACTGGGATGGCTGTTCAAGGACATGAAGATCAAGTCTCTGGAGGAAATGTACCACTTCTCCTTACCCATGAAGGAG

a score=36556
s chr3            86864438 921 + 160039680 aagaaatcctatataagcTTCTTCTTCGGGAAAACACCAAATGGTGG-AGTGGGAGGGCCC--GGAGGACCCAGGGGCCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGG-----GCCGCGGTAGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAA--GACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCTGAGATCATTGACTTCTTCCTGGGTGCGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGT---GCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGTCATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTCCTGATGATGGCTGGTATAGATGACTGCTACACTTCAGCCAAAGGCTGCACTGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACCTGACCCCCAACCTCTGGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTC----ACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGGATTTTATACAAGAAAAATGAAAGAATTAAG
s HiC_scaffold_1 201775492 875 + 233722169 aaagaaacttACGTA----TCTTCCTCAGGAAAATACCGTATGGGGATATCACCAGTGCCCCAGGAGGGACCTGAGAGCCAGGCATGGGACACTAGAGGAGCGTCTCTGGAGACTTCAGCATCAGCCTCGAGGTTGTGGGTGCACTAGGGGCCG---GGCCTGTGAATTTGAGGTGGAAAGGTCCAGGACAGAGTGGATCCCCACCACCAAGTAGGGCTGGCCAGTCAAGACTATGAAGAT-ATGTCTCTGGAGGAGATTTATCTTTTCACCTTGCCCATCAAGGAGTCTGAGACTATTGATTTTTTCCTGGCTACATCCTCAAAG---------------ATGATCCCAGTCCTGCAGAATCAAATTTGTGCTGGACAGCAGACCAGGCTCAAGGTGTTTGTTTCTCCTAGGGTCCCCAATGGTCATGCTGGTCTGGGTGTAAAGTGCTCCAAAGAGGTAGCCACTGGCCTCTGAAGGGCAGTGATTCTAGCTGAGCTCTCCATTGTCTGTTTGCAGAGAAGCTGCGGGGGGAACAAGACCAGCAAGCCCCGTACTGTGCCTTGCAAGATGAGGGGCTGCTATGTCTCTGT------------------------------------CAGCATCTAAGC-CCCATGCCCAGGCTGCCTCT-CTGATGGCT-GCACTGAAGCCTGCCATACCTCTGCCAGGGGCTGCACAGCTCCTCTGGGAAGCTTCACGAAGGCCACCATTGATATCATCTCCAAGACATCCAGCTGCCAAACCCCTGACCTCTGGAAAGAGACTGTGTTCACCAAGTCTCC-CAGTAGGAATTTGCAGACAGACCATCTTGTAAAAGTCCACACCGGAGTCTCTGTCCAGAGGCCTCAGGCTCTAGCTGTAGCTACAACACAGGGCTtctacatgagaaaaataaagtgaataag

a score=30904
s chr3            86864439 924 + 160039680 agaaatcctatataagcTTCTTCTTCGGGAAAACACCAAATGG----------TGGAGTGGGAGGGCCCGGAGGACCCAGGGGCCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGGTAGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCTGAGATCATTGACTTCTTCCTGGGTGCGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGTGCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGTCATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTCCTGATGATGGCTGGTATAGATGACTGCTACACTTCAGCCAAAGGCTGCACTGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACCTGACCCCCAACCTCTGGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATAT-AAGGATTTTATACAAGAAAAATGAAA-GAATTAAGTCTG
s HiC_scaffold_1 161823476 724 + 233722169 aaaaaacttAAATA-GCTTCTTCCTTGGGGAA-CAACAAATGGATCACACCTGTGCAGTGGGAGGGACTAAAGCACC-AGAGGCCCTGGCCT----------------------GGAGTCTTTGGCAGGGGCCATTGGGATCGCAGCAGGG---------------------AGGCCAATGACAGG-----AGTAAATTCCTGTTACCTAACTGGGTGGGCTGGTCAAGGACATAAAGATGAAGTCCCGGGAGGAAATCTGTATCTTTTCCTTACCCATCAAGGAGCCTGAGATGACTGACTT-TCCCCGGGTGCATCCCTCAAGGATGAAGTTCTAAGGATTAGGCCTGTGCAGAAGCAAACTCCTGCTGACCAGTGGACCAGGTTCAAGGCACCTGTTGCCTTTGGGGACCACAATGGTCACGTGGGTCTGGGTGTGAAGTGTTCCAAGTAAGGAGCCACCGTCATTCAGGAGGCCATTGTCCTGGCCAAGCTCTGCA-CACCCCCGTGCCAAAAGGCTACTTAGGGAACAAGACTGGCAAGCAGCACACGGTCCTTTGCAAGGTGATGTGCCACGGTGGCTCT------GTACATCTGACCCTTGCCCC--------------------------------------------------------------------------------------------------------------------------------------------------AGAGCCACCTGACCC-------CTGGAAAGAGACTGTGTTCACCAAGTCTTCCTGCCAGGAATTCCCTGAGCATCTTGAGGAAACTTACACCAGAGTCTCTGTCTGGAGGACTCAAGCTCCAGCAGTAGCTACAACATAAAGGTttttatacaagaaaaataaaatgaattaaatctg

a score=34845
s chr3            86864454 889 + 160039680 gcTTCTTCTTCGGGAAAACACCAAATG-------------GTGGAGTGGGAGGGCCCGGAGGACCCAGGGGCCCAGGAT-TAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGGTAG-----------------------AGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCTGAGATCATTGACTTCTTCCTGGGTG-----CGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGTGCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGTCATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTCCTGATGATGGCTGGTATAG--ATGACTGCTACACTTCAGCCAAAGGCTGCACTGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACCTGACCCCCAACCTCTGGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGGATTTTATACAAGAA
s HiC_scaffold_1 224721778 842 + 233722169 GCTTCTTATTTGGGAAACCACAAAATGACAAATGACACTGGTACAGCAGGAGGCCCCAAAGGGT-----------GGATGTGGGAGGCCACAGAGGCTTCCAAGGAGGCTTGGGCAGTGGCCTTCAGGGCCTCGGGAATGGACATGGCAGGAGCTGAGGCTAGGCTGTGGGGCTCGCAGTGGCAAGACCAAGGACA--------GCGGATCCCTGTCACCAAGCTGGCCCAGCTGGTCAAGGACATGCAGATCAGGTCCCTGGAGGGCACTGGCCTTCTGTCTTTGCCCACCAAGGAATCTGAGATCCTTGGGCTTTGGGTGGGGGGGGAGCATCCCTCAGGAATGAGGCTCAGGAGATCACAC-AGTACAGAAGCAGACTCGTGCCGGCCAGTGGACCAGGTTCAAGGTATCTGTCGCC-CAATAGACCACAGTGGTCATGTTGGTTTGGGTCTAAAGTGCTCCAAGAAGGTAGCCATTGCCATCCGAGGGTGCACCATCCCAGCCAAGCT----GTCACCCCTGTGTGGAGAAGCTACCAGGGAAACAAGATGGGCAAGCCCCGCACCGTCCCTTGCAAGGTGACCAGCTGCAGGGGCTCTGTGCTG-----------TCCTACTCCCAGAGGC----------------------------------TTCTGATGGTGGC----ACAGCTATGACTGCTGTATTCCTGTCAGGGTGTGCGCTGCTGCTCAGGGCAACTTTGCCAGGGATACCAATCGTGTCATTTCCCAGCTCTACAGCTACCTGACTCCCAGCCTCTGGAAAGAGACCTTGTTTACCAAGTATCCCTA-CAGAAATTCACTCA-CATCTTATAAAGACCCATGCTAGAGTCCCT---------------GCTCCAGCAGTAGCTGCAACACAGGGTTTTTATACAAGAA

a score=8104
s chr3           86865211 157 + 160039680 GGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGG-ATTTTATACAAGAAAAATGAAA-GAATTAAGTCTGCTAaa
s HiC_scaffold_1 92989995 154 + 233722169 GGAGAGAAACTGT--TCACCAAGT-TCCTTACCAGGAATTTACTGATCAATTTGTGAAAACCCACACCAGAATCTC--TCCCGAAGACTCAAGCTCTAGCAGTAGCTACAACATAAAGCATTTTATGTAAGGaacacaaaatgaatgaaatctgtCAAA

a score=6289
s chr3            86898385 358 + 160039680 AACTTTAATGATGTTGAAAACCATGTATATTTGGTTTTTCTCCCTGTACCAAAATATACCCAAGAACAA----CGTAAAGGAATGCAGGTTGGTTTTGCTCATGATTTCGGGGGTCTCAGTGAATGATCGGCTGGCCTCGCTGTACTGGACCTGAGCCAAGACAGA------TGGCTGAGGCACACAGTAGAGAAGACTGTTCACCT-----CTGCCAACAA------------------AAGGTGACAGAGAGATAA---GAGTGAGAGCAGGACA-TGACCTCACAGAAATGTGCCCAAGAAATTATTGC-TTGTGCTAG-------------------CTTCCAGCACCTCGAAGCAGCCAATCAAATTGTGGGCCCATCAACCAATAAATCCACTGATGAGATAGAAGCCC
s HiC_scaffold_1 181820267 392 + 233722169 AGTTTTAAGCAGGTAGCAtaatgtgttagtcagctttctgttgctgtgacagaata--cctgacatcaatcatctgaaaggaagaaaggttgttttggctcacaggttTAGAGGTGTCAGTCCACGGTCTGCT-----------ATTGTGCCTGAGGCAAAGCAGAACATCATGGTTG----------TAGTGGAGGTTGTTCCCCTTAAGACAGCCAACAAGCAGGGGAGAGGGtagagatggagacagacagaGGAAGGGACTGGGAAGGAGACACTGTCCCCATGGGCATACCCTCAAAGACTCACTTCATTCAACTAGATCCCACCCGCCTCCTAAATTTCCATCATCTCCCAATAGCCCATCAAATTGTAAACCCATCAATAGATTAATCCATCGATGGGGTCAAAGCCC

a score=6382
s chr3            87055753 116 + 160039680 AAAAAGGGACACCCCCCCAGCAATGAACAAAGAGACCCCCTTGTTGGTGGTGTTGTTGCTATATCAGTCAGGGGCAGAGCAGATGGCAAGCCTTTGTGcatcc-agcttgatgcctg
s HiC_scaffold_1 195809920 112 + 233722169 aaaaag----acccCCCTGGCAATGGGCAAAGAGACACC-TCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCTG

a score=6967
s chr3            87066897 132 + 160039680 CCCCTAGAGAGAGCCCAGGTGTGGCTGCTGTACCACATGTGTGTCAGTAGGACGCAGAGAGGAGAGAGGATATGAGTACACTTCGTGTTCTGACCTGTGAACATCTGAATGATTAGTAGCCT-ACATTCCCAG
s HiC_scaffold_1 194511551 133 + 233722169 CCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCCAG

a score=4365
s chr3            87259861 253 + 160039680 AACAGCTGTACTAACCATGGATTTAAAATGAGTCCACTAGCTCATTGAg----atagcacaggtgtggaattacagctattcatgaagttaaggcaggtagatcacaga---ttcaaagc-------tacagatgaagtttagggctagcttgggtgacttagcaagactatgactcacaataaGCAGTAAAC----------------AGGGCCAGACATAGACAGCTTAGTGGTGGGGTACTTACCGAGCACATGCAAGACCCTGGACTTGAGTCTCAGTA
s HiC_scaffold_1 210252816 277 + 233722169 AATAGCtatttt---cctaaattaaaaaTG-GTTCATTAAAccatcaggcatggtggcacgtgcctgtaattctAATACttgggagggctgaggcaggaggattgctgggagttcgaggccagtctgtaCATAGTGAGtacaga-ccagcctgaactgcatagggagaccctatctcaaacaaacaagcaaattgAAAATAGTCCACTTAGGGGTTG-CAGGTATAGTTTAGTGGTAGGGAGCTTGCCTAGCACGTGCAAGACTCTGGGTTTGAGCCCCAACA

a score=3419
s chr3            87260057 57 + 160039680 GCTTAGTGGTGGGGTACTTACCGAGCACATGCAAGACCCTGGACTTGAGTCTCAGTA
s HiC_scaffold_1 227073854 57 + 233722169 GCTTAATGGTAAGGTGCTTGCCTAACATATGAGAGACCCTGGGCTTGATTCCCAATA

a score=3987
s chr3           87417628 139 + 160039680 ATCCCAGTATGCTACAAAA-AGACAGTATGCTAGCTAGTCTTGATTGT-----TCATTGGGTTAATAAACAGCTAGGAAATTAACAAAGCACACCTCTGGCCATGTCTGTGATGGTCTAGATCTAGATGATCTAGAGAAGTTTAG
s HiC_scaffold_1 73658771 134 + 233722169 ATCCCTCTCTGATTCAATATATATGGTGTGAAGGTTAATCTTGATTATCAACTTGATTGGATTGAGGAACACCTAGAAAATCAGTAAAGCATACTTCTGGGCGTGTCTGGGAAGGCGT-----------TTCCAGAGAAGATTGG

a score=22439
s chr3            87679360 879 + 160039680 TCTACTCTTTTTTTttttctttccccgagtcagggtttctctgtatagctctggctgtcctggaactcactt-tgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctgggattgaaggcgtgtgccaccactgcccTGATGAAATCTCTACTCTTAAGGTTGAAATTAAATGAAACCTGAACTTTGGTATTACattttattttatattttatttttatttCTTCAAAAGGAGCTCTGGCAAAGTTTTATTAAAGGTAAACTTT--CTTGTTTACTTCTCACCAGTCTGTTCTGGCATGCTTCTAATAATATCAGAATCACCTGGGTCAATGATAGCCAGTGTGCATACTCTGTAGTATTTTCCACACGCTGTGCCCAGTTCAATATTATTGCCACTGTAGTGATAGACCCCAGTTTTAGCCAACATGGCATAGAACTCTATTTCAGATTTCCTCAAAGCTGGACAGTTGTTGGCAAGGATAACCAACTTGGCTTTGCCTTGTCTGATCATCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAGTCTGTTTGTATCCCAGCACGTACTTCCCACTTTTCATAACAAGTTGGAGCCTAGAGTTGATCAACTCCAGAGACTTTTCCGTCTTCTCTGCAGCCACCATCTTCCTGCCTTAGGTGCTGGACAACCCCCAACCAACACCAGCCACCAAGATGGCCAGGGATGGAGAAAGGCTTGGTATTACtttttttttttttttttttttttttgagacagggtttctctatatagctctggctgtcctggaactcattttgtagaccagtctggcctcaaact--cagaaatccacctgcctctgcctcccgagtgctgggattaaaggcatgtgctaccacgctcagct
s HiC_scaffold_1 184752940 852 + 233722169 tttgcttcgttttttgttttttgtttgagatagggtctcattgtatagttcaaactggccttgaactcccttatgtaacccaggctg-------------------------------------agtgctgggattacaggcatgtgtcaccac-----------------------------------------------------------------------------------------------------acctggcaa-gttttattaatgaaaaatgttGCATGGTTTATTTTTCACCAGTCTGTTCTGGCATGTTTCCAATGATATCAGAGTCACCTGGATCAGTGATCACCAGTGCGCATACTCCGTAGTATTTTCCACATGCTGCATCCAGTTCAATTTTATTGCCACTGTAGTGGTGGACTCCAGTTTTGGCCACCATGGTATAGTACTCTATTTCAGATTTCCTCAGAGCTCAGCAGTTGGTGGCAAGAATGACTGATTTCGCTTTGCCTTGGCTGATTAATTTCAGCAGcctgttttgggtttgttgttgttgttgttgttgtttgttttgttttttgagacagggtctcactatgcagttcaggctggtcttaagctcactttgtagcccaggctggtttcaaactcgcagtaatcttcctgcctcagcctcctgagttgcaaTTACAGGGTTACAGGCCACCATGCCCTACACAGCATCTGCTTTTACTCCAGCAGGTTCTTTCCACTTTTCGTTACAAG-TGGAGCCTAGAGTTGTTGGACTCCAGAG--------------------------ATCTTCCCATCTAAGGTAC-GGACAATCCTCTACTAAGAGCAGCGGCCACGATGGTCAGGGAGCAAAAAAG-------------------------------------------------------AAagctcaggctaaccttgaattcactatgtagcccaggctggcctcgaatttacagcagtccccctgcctcagtct-ccaactgctgggattgcaggtgtgtaccatccTGCTGTGCT

a score=6200
s chr3            87779632 141 + 160039680 GACCTCAGTGTTGGAGAGCTGGTACCAGGGCTGCTTTCCATAGGTGAAGATCTCCCAGAGCACCACCCCAAAGCTCCACACATCGCTCTCGGTGCTGAACTTGCGGTAGAGGATGCTCTCGGGTGGCATCCAGCGGATGGG
s HiC_scaffold_1 162800636 141 + 233722169 GACCTCCTCGTGGGCCATCCCATAGTAGGGCTGCAGGCCATAGGAAAAGATCTCCCAGAGCACCACACCATAGGCCCACACGTCAGATTCTGTGGTGTAGCGGTTGTAAAAAATGGACTCGGGGGGCATCCAGCGGATGGG

a score=6809
s chr3            87779633 194 + 160039680 ACCTCAGTGTTGGAGAGCTGGTACCAGGGCTGCTTTCCATAGGTGAAGATCTCCCAGAGCACCACCCCAAAGCTCCACACATCGCTCTCGGTGCTGAACTTGCGGTAGAGGATGCTCTCGGGTGGCATCCAGCGGATGGGCAGCATGGTCCGACCTCCCA-CCTGCAGAGATACACTGTATCACCTCCTCTGGAG
s HiC_scaffold_1 149353733 195 + 233722169 ACTTCCTGGTTGCTGAACCCGTAGTAGGGCTGCAGTCCGAAGCTGAAGATCTCCCACAAGACGACCCCGAAGGACCAGATGTCCGAGTCGGAGGAGAATTTGCCGTACAGGATGGCCTCGGGGGGCATCCAGCGAATGGGCAGCAGGGACTTACTCTGCACCCTGTAGTAATCCGCGGAGTAGATCTCCCTGGAG

a score=7127
s chr3            87780063 194 + 160039680 CACTTACTCGGTAATAGTCTGTGCTATAGATGTCTCTGCTCATGCCAAAGTCTCCAATCTTCACCACTAGTCCCTGACCCACCAGACAGTTGCGTGTGGCCAGATCCCGGTGCACAAAGTGCAGGCTGGCTAGATATACCATACCAGCAGCCACCTGGCTAGCCACAGCCAGAAGCTGCCCAAGGCCCAGAGGA
s HiC_scaffold_1 162800791 189 + 233722169 CATTAGCTTTGTAGTAGTCTGCCGAGTAGATATTCCTGGAGAGGCCAAAGTCTGCAATTTTCACCACCATGTTCTCACCCACCAAGCAGTTCCTGGTGGCTAAATCTCGGTGGACAAATTTGCGCTCGGAGAGATAAGCCATGCCAGctgccacctgcctggcaatgcC---AAGCTGCTC--GGCACAGGAGA

a score=5445
s chr3            87780068 185 + 160039680 ACTCGGTAATAGTCTGTGCTATAGATGTCTCTGCTCATGCCAAAGTCTCCAATCTTCACCACTAGTCCCTGACCCACCAGACAGTTGCGTGTGGCCAGATCCCGGTGCACAAAGTGCAGGCTGGCTAGATATACCATACCAGCAGCCACCTGGCTAGCCACAGCCAGAAGCTGCCCAAGGCCCAG
s HiC_scaffold_1 149353892 185 + 233722169 ACCCTGTAGTAATCCGCGGAGTAGATCTCCCTGGAGAGCCCAAGGTCTGAGATCTTGACGTGCAGCTGCTCCCCAATGAGGATGTTGCGTGCCGCCAGGTCCTTGTGTACGAAGAAGTGGCTGGACAGGTACTCCATGCCCGCGGCGATCTGGATGGCGATGTGCAGGAAGTCCCCATGGTCCAG

a score=4904
s chr3            87781432 138 + 160039680 GAGGAAACGGTTGAGGTCCCCGTGGCGCATGTACTCAAAGACCATGAGCAACGGGCCACCCTCG-GTGCAGACTCCAAAGAAGCGCACGATGTGCTGGTGCTGTAGCATGGTGAGCAGCTCGGCCTCACGCTGAAAGTC
s HiC_scaffold_1 149354143 138 + 233722169 GAGGAACTCGTGCAGGTCCCCCTGGTTCATGTACTCGAAGAGCAGGCAC-ACGGGCTGCTCCTGCGTGACGGCGCCCAGCAGGCACACGACGTTCGGGTGGTGCAGCTCGGCCAGCAGCGAGGCTTCCTGCTGGAACTC

a score=24671
s chr3            87931145 1132 + 160039680 actaaggcgtttctccagccccAGCATCTTTAGTTTTTAAAATGGCACAGAGATCCGGAGAAGGGAAATAACCCTTTTAAGACCAACCTAAAGGTGAATTGTGGAGGCTTCAGTAGTTAGCCGGGCTTTGGGGCTTGTGGAAGTTATCACTTATGTCTTCCAGAACTGATCTTCTTTTCTCTCA-GGCCTATGGTGCGGGAATCAGGATTACTTTG-TCCCCAAGGCTGATTGCAGACCTCCACATGTTGAACTATGGGATTCCACAGAGGATGAGCCTC----TCATCCTTTTGCTATCAGTGAGCCATTCTTCCCAGCTT-CCTCCCACCATCCACTGATCTCATGTCTACCATACTCCTGAATTTAGACTTTGGGCAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGCTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAATAAAAAGAACCAACCCCCTAAC--AAGGTGTCTAAGTTGAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATGGCATTTTGAAGATCCTTCCATGCCCAAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAGCAGTCCAAAGACAAGAAAGCACCATTGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGATTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCAC-------------CCAGAAGAAGGGCTCCAAGAAGAAGTCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGAAGCCCTTGAAGAAAAATGCTGTACCGAACTCCACCCAAGCTCGTTCTGAAGATAAGTGCCCTACAGTCCCCCAAAACTTGCCAGGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACAGGACCCAAGGGACGCGTTAGTTCCCTGGCTCGATGCAGCATTGTAAATTACAATGGTGATGTGCTGTACGATGAGTACGTCCTCC--CCCCCTGCTACATCGTCAACTACCGGACCAGATGGAGTGGCATCCGGAAGTGCCACATGGTTAACGCTACACCCTTTAAGACTGCTCGGAGTCAGGT
s HiC_scaffold_1 135142219 1043 + 233722169 ACAGAAGTGTAGCTTCAGCCTCAGT-CCCTTAATTTTGCAAATAAACCTGGGACCTAGA-AAGAAGAATGACCTTTCCAAAGTTACACAGCTGGCGAGCTATAGCG-CCTCACTAGA-ACTCAGGCTTCCTAACTTACA--------------------CTAGAAC--ACCCTCCAGCATTTCATGGTTTGTAG-ATAGTTATCAGGGTTGCTCTAATCCCCTAAATTGTCTGCATTCCTCCACATCTTGAGC---AGGATTTAGGAGAGAATGATTCTCCTTATCATCCTTTC---AGCCAAGAGCAACTCTTCCCAGTGGATCTACTCCCATCTCCTGTCCTGATGCCTACCTTACTCCTAAATCTA-------------------AAAAGACATCAGAAGGAAAGGTCAGACAATGAAATCTTGGCACAAAACAACAGTTTTGGagacataaatattttctaaataaaaagaatcagtcCTGTAGAGAAAGGCACCTAAAGTGCATTCAGAGccttcaaagaaaacagaaacactgagatAGGTTGGGACTTGGAAAATCCTTTCCCTCCAAAAACAGAT---GACAGCTGCTTCCAGAAATGCATCAGTAC--TTCTTGGACAAGAAAGTCAGTGTGTCTTCACTGACCCCTAATCTTTCAAATAATGCCGATTTTGTTGCAGTTCATATAGATTTGCTTGGTGAGCTCCATGA--CCGTTTCAAATATCAA-AGCACAACTCAGCCATGACCAGAGAAAGGGCCCCTTGAAGAAGTCCTCCTCAAATGAAACTGT---------------------------------------CTTCA-GAACAATGCTTCTCAGAACAACACCACACAGGAATTCACCCATGTTCACTCAGAGAACATGTGCTCTGGAGCATTCCAGAAATTTCCAGTGAAGATTTTGGCAATTGACTTTGAGATGGTAGGCACAAAAATCAGGGGATACATCA--------GCTGGAAACAACATTGTCATCTCCAACAGAGATATGCTTTATGGTGAGTGCTTGCCCCTACCCCCTGCCACATTATAAA--ATTGGTCCAAAAGGATATATGT---GACCAACCACATGGCGTCTGCGATACCCTTCAAGATTGCTTGAAGACAGGT

a score=9136
s chr3            88284592 162 + 160039680 TGTGTGAATTCTTACAGACCCAGCTTCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGAACCTGACTTTGTTACCAGTTTCCATCCGGATCCACTG-AGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTGATTCTGAAAGTCTTGTGAGAA
s HiC_scaffold_1 114546289 162 + 233722169 TGTGCAATTCTTTGCAGACCCAACTT-GGTCTTCTCTAATGCTCCCTCTTAGAATTGTACTTGATTTTATTACCAGTTTTCATTAGAATTTACTGCGGGAATGGGAtgattttgcatttgtttcttgGCCAGGAATCAGCTGACCCTGAAAGTGTGGTGAGAA

a score=10201
s chr3            88284592 167 + 160039680 TGTGTGAATTCTTACAGACCCAGCTTCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGAACCTGACTTTGTTACCAGTTTCCATCCGGATCCACTGAGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTGATTCTGAAAGTCTTGTGAGAAAAtgt
s HiC_scaffold_1 185142895 162 + 233722169 TGTACAACTCCTCACACTCACTGCTCGGTCCTCCTCCAGTGTCTCCTCTCGGAGTTGTACCAGACTCTATTACCAGTCTTCATCCGAATCCACTGAGGAAtgg-----ttttgcttttgcttcttggCCAGGAATCATTTGATTTTGAAAATCTTGTGAGAAGACAT

a score=18755
s chr3           88428880 572 + 160039680 ggtcatcacaaaaaggacatgaggGGCCGCAG-----CCATC--TTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTAC----CAACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTAATGGACACAAAGAAATAAAATACCAGCACCAGGaaaaaaaaaaaaaaaaaaaaaa
s HiC_scaffold_1 18806876 578 + 233722169 GATTACCACAAAAGATAGGTGAACACTCTCAGAAGATCCATCATCTCTGGTAACCTGCCAAAATGACACACATGAAGAGGGTAAAGAGAGCTATTGATTG--TGTCTTCTAAGCCTTTTAGGAAATATGAGGTTTTTCCTCTGTTCACATATATGTGAATCTACAAGAAAGGCGATAATTTAGAGATTAAGGGAATAGatactgttcaaaaagaaagtcCCTATAAATATTAATGTGCAAAACTGGAAGCCTCTATAGCA-GCACATTGTTGTAAACCATCAGATTAAGGGCAAGATATTTGCCAGGTGACTAAATGTGTATATTTATCATGTGAAGCACT--AGGAGTCAAAATAGTTACTTGAAACacataaagcaaaattaaaataaaaggtagaaaatCCAAGAGGAACTTACCTGGGTTCAACAGATGCACCAGTCTGATCTGCTCAGTGAAGCACATGTTGTCAGAATTGATGGAAAGAAGCCTGAAATACCTAAATCTATTCCCTATGAACCCACAGCATagtagatgaaaaaaaaagagagagagagactaaactataaagaaacaaacaaaaaa

a score=11573
s chr3            88428903 171 + 160039680 gGGCCGCAGCC----ATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAA-GAGGAGAGGCACCCAGTACATGTTCTCTAGGCC-TTTTAGGAAACATGGCGTTGTTCCTTTGG-CCACATACCTGCGAATCTACAAGAAGGGTGA-TATTGTAGACATCAAGGGAATAGGCA
s HiC_scaffold_1 181029398 179 + 233722169 GGGCCGGAACCCCCCATTTTCCAGTAATTCGCCAAAATGACGAACACAAAGGGAAAAGAGGAGGGGAACCCAGTATACGTTCTCTAGGCCTTTTTAGAAAACATGGAGTTGTTCCTTTGGCCCACATACATGCGAATCTACAAAAAGGGTGATTTTTGTAGACATCAAGGGAATGGGTA

a score=26363
s chr3            88428906 473 + 160039680 CCGCAGCCA---TCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGT-ACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCAC--ATACCTGCGAATCTACA-AGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA--------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCC
s HiC_scaffold_1 174026032 494 + 233722169 CTGCAACCACTGTCTTCCAGTAATTTGCCAAAATGACAAacacaaagggaaagaggagaggaatcCAGTTATATGTTCCCTAGGCTTTTTAGAAAGCATGAAGCTGTACCTTTGGCCATGTATATATGTTAATCTACACAAAAAGGTGATATTGTGGACATCAAGGGTAAGGATACTGTGCAAAAAGGAATGCCACACAAATGTTACCATGGCAAAACAGGAAGAGCCTACAGTGTCACCTAGCATGGTGTTGGCACTA----CAGTAAACAAGTTAAAGGCAAGACACTTGCCCAGAGGATTAATGTGCATGTGGAGCATATTAAACACTCA--GCGTTGGGATAACATCCTGAAATGTGTCAAGGAAAATGatcaggaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCC

a score=27201
s chr3           88428911 487 + 160039680 GCCATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGG-AAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA--------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACC----CAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTAA
s HiC_scaffold_1 18289656 508 + 233722169 GTCATCTTCCAGTAATTTTCCAAAATGACAAACACAAAGAGAAAGGGGACAGAAACCCAATACATTTTGTTTAGGCCTTTTAGACAAAAATGGGGCTGTTCCTTTGGCCACATACATGCGAATCTACAA--AGAGTGATATCGTAGACATCAAGGGATT-GGTTCTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAGGGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGAGCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatgatcagaaaaagaagaaagccaaAGAGAAAGATACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACTTT-TGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=26711
s chr3           88428912 482 + 160039680 CCATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA--------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGC
s HiC_scaffold_1 60922508 501 + 233722169 CCATCTTCCAGTAATTTGCCAAAATGATGAAgacaaagggaaagaggaggggacCCTGGTGTATGTTGTTTAGGCCTTTTAGAAAACACAGGGCTGTTCCTTTGACCACAGACATGCGAATCTACAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAAGAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACATTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGAAC-CCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGGC

a score=16606
s chr3           88428926 468 + 160039680 CTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA--------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGC
s HiC_scaffold_1 52267556 615 + 233722169 CTTGCCAAAATGATGAACACAAAGGCAAAGAGGAGGGGAACCTGGCGTGTGTTCTCTAGGCCTTTTA--AATCATGG-GTTGTCCCCTTGGCCACAGACATGCAATTCTACAAACAGGGTGACAgcagtttagctcagcagcacaagcgcctgcctggcaagcttgaggtcgtgagttcgattcctggtaccacaacacacacacacacacacacacacacacacgcacacacgcacacacgcacacacgcacacacgcacaccaaAAAGAGTGATTTTGTAGACATCAAGGGA-------CTGTGCAAAAAAGAATGTCACACAAATGTCACCATGGCAAAACAGGAAGAGTGTCCAGTGTTACCCAGCATGCCGCTGGCACAGCTGGAAACAAGCAAGTAAAGGGTAAGACACTTGCCAAGAGGACTGATGTGTGTATTCGGCATATTAAACACTGGACAAGTCGCGACAGCTGCCTGAAACGTGCCAAGGAAAAGGATCTGAAAAAGAAGGAAG---------------CCTGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC-CAAGAAATcagggc

a score=6209
s chr3            88484898 253 + 160039680 CAAGTTCTGTAGACC--CCTCCTAGTTCACCTCTCCTCCTCGCCCTCCAGCAGCTTTCGATAGGCATGGATCTCCATGTCCAGGGCCAGCTTGATGTCCAGCAGCTCCTGGTACTCGTCCAGCTGCTGCTGCATCCTCGCCCGCATCTCCGCCATCTCTCGCTCTTTCTCAGCCAGCAGGCGCCGGC--TGGTATCGCGCTCACGGGCCAGCGAGTCCTCCAGGTCACGCAGCTTT----------GCCTCCTTGGCTGCCAACTGG
s HiC_scaffold_1 227194872 250 + 233722169 CAAGTTCTACATCCCAGCCTCC-----AGCCTATTCTCCTCGCCCTCCAGTAGCTTGCAGTAAGTGGCAATCTCGATGTCCAACGCCAGCTTGACGTTCATGAGCTCCTGGTACTTGCGCAGCTGCTGCGCCATGTCCTGCTTGGCCTTCTGCAGGGCGCTCTCCAGCTGGGCCAGC-----TTGGCATTGGCATC---CTTAATGGCCATC----TCCCCACGCTGCCCAGCATTGGCGATGGCAGCTTCCAGGGCTGCTCTCTGG

a score=3744
s chr3            88502789 224 + 160039680 TCTAGCTGGAGGCGGGCGCGCTCCTTGGCCACAGAAT---CAAGGGTCTTGCGGGCATCCCCCAGCTC------GGCCTCGTAG--GCCGCCTTGATGCCGGACACCTCTCGGCTGACCACCTCTTCAGAC--TCAGTGATGCGAAGGCGCAGCCCCGCGTTCTCGGTCTCCAGGGAACGCACGCGATCGATGTACACGGCCAGGCGGTCATTGAGCTCCTGCAGGTCCTCCTTCTC
s HiC_scaffold_1 120552716 227 + 233722169 TCGATCTGCAGGACGATGCGGGCGTTGTCCACAGAATTGTCAAAGATCTG------AGCCTTCAGCTCCTCGATGGTCTTGAAGTAATGGCCCCAGTCTCTGAC----CTGAGCCCCCTTCTTCTCCAGATGTTCCCGGATCTTGCCTTCCAGCCTCCGATTTTCCGTCTCCAGGCTCCTCACCCTGTCCAGGTAGGAGGCCAGACGGTCGTTCAGGTCCTGCATGGTCTCCTTCTC

a score=40952
s chr3            88576220 985 + 160039680 TTTTTTTTTTTTTTTTAGCCTTTTACTTCCCCAACTTTATTAAAGAAAAA-----GCAGCGGTGGTAAATCTCTAGAACATGGTCAATCTCCTGGGGTTCTCCCTTCCAAGTGTGACATCTGATTTCCAAGCACATGCTGGT-GTAA--TGGTTCCCATCACTAGGCAGGTGAGAAGCTGACATCC-TCATGTGCTCATCTCCCAACTTTCCCCAGTCTGTGGTCTGTCTTTGGATCAGCAATGATGGCCTGGACGGCTACTATGGCTTCATTAATTTTTGTCTGTAGCTCTCTGAGCTCTTCTATGTGCAGCAACCGCAGGATCTGAGCAGCTTCATTAAGAACTGCATCGCCTGTGTCAAAGCCAAGAATATGTTTCCCTAAAGCAACAGGTAAGCCCTCTTTTGTTTGATTTGCTTTAGCAACTGCATCCTGTGTTAGACGTTCCTGAACCAAAATGCGAATTGCCTTAAGCATTACCAAGTAGTCATCATGATGCTGAATCTGAAGGAGGTTAGCCAGAGCCATGACACCCGCCTTAAAATCAGGATTATTTACATCCAAGTTGATCAGTGGCTCTGCATTTTTAGCTGCATTGTCAGTATTTTT------------------------CCTGTTATCAGGTACTAAGTCCTTGTATTTTTCAGCGTTATCTCCATATTCAAGTCTAACAGCTAAACCAAGAAGCCAGTCAATTGCTTCTTGCTGATCCTGAATCTTGAAAGGACAGTTAACATCTTTGAGATACTTTTCAAAGAACTTGGGCCAGTCACTGCTGTGGATGTTTCTCAAGTTACCTCTGTCTTCAATCTTGTAG--------TGTCTGATTTTCTGGTCTTCAAGCCAAACGTTAAAGTTTCTAAATTCTGTTTCATCTTTGCATTTGAAGCCTGAGGGGTTGTGGTAATCCAGGGCCGTGAGCTTGCGTCGGAACATGGTCCCCGCTGCTCGCGCTGGC--CGCCCGGGCCACCGCTGGGACAGGagaagcaaggtgaggcag
s HiC_scaffold_1 211830063 940 + 233722169 tctctttttttcttctactttctta-------aaccttattaaggaaaaaaagcagtggTGGTGGTAAATCTCTAGAACA--ATTAGTTTTCTAGGATTCCCTCCTCAAAA-GTGAGAACTGATTTCCAAATACATACCAGAAGTTACCTAGACCCCATTTGTTCTAAGGT---AAGCTGAAGTCTATAAAGTGTTCATCTTCCACTTTTCCT--GTCTGTGATCTGTCTTTGGATTAGCAA-------------AGCTACTACAGCTTCATTAATTTTTGTCATTAGGTCTTTGAGTTCTTTTGTGTGTAGCAATTACATAATTAGAACAGCTTCTTTAAAAACTGCATCTCTAATATCATGACCAAGAAT--GTTTGTCTAAAGTAACAGATAAGCCCTctt--gtttgattggctttagcAACGACATCCTCTGTTAGGTGCTCCAGAAACAAAATGTGTATTGCC--------------GTAGCCTTCAGG----------TGAGGGAGGGCAGCCAAAGCTGTTACACC-------------AGATT-----CATCCAGATTGGCCA-TGGCTCTGCATTCTTAGTTACATTGTCaatattgtgtatgtgtgtacatgcacgCATACGCGTGTTACCAGGTACTAAATCCTT-TATTTTTCGGCATTATCTCCATATTCAAGTCTAACCTCTAAACCGTGAAGCCAGTCACTTGCTTCCTTACCTTCCTGAATCTTGAAAGAATAGTTAACATCTCTGAGATATATTTCAAAGAAGTTGAG-CAGTTATTGCTGTGGATGTTTCTTAAATTACCTCTTTGT----TCTTATAGTGTCTGGTTGTCTGGTTTTCTGGTTTTCAAGCCAAACAATAAATTTCCTAAATTCTGTTTCGTCTTTGCTTTTGAAGCCAGCAGGATTTTGGTA-------GCTGTCAGCTTGCTTGGGAAGATGGTCCCTGCTTCTTGCTTAAGAGGCTCCCAGCCCTCCACCGGCAGAGCAGAAATGAGGTGGAGCAG

a score=58170
s chr3            88576229 944 + 160039680 TTTTTTTAGCCTTTTACTTCCCCAACTTTATTAAAGAAAA-----AGCAGCGGTGGTAAATCTCTAGAACATGGTCAATCTCCTGGGGTTCTCCCTTCCAAGTGTGACATCTGATTTCCAAGCACATGCTG---GTGTAATGGTTCCCATC---ACTAGGCAGGTGAGAAGCTGACATCCTCATGTGCTCATCTCCCAACTTTCCCCAGTCTGTGGTCTGTCTTTGGATCAGCAATGATGGCCTGGACGGCTACTATGGCTTCATTAATTTTTGTCTGTAGCTCTCTGAGCTCTTCTATGTGCAGCAACCGCAGGATCTGAGCAGCTTCATTAAGAACTGCATCGCCTGTGTCAAAGCCAAGAATATGTTTCCCTAAAGCAACAGGTAAGCCCTCTTTTGTTTGATTTGCTTTAGCAACTGCATCCTGTGTTAGACGTTCCTGAACCAAAATGCGAAT---TGCCTTAAGCATTACCAAGTAGTCATCATGATGCTGAATCTGAAGGAGGTTAGCCAGAGCCATGACACCCGCCTTAAAATCAGGATTATTTACATCCAAGTTGATCAGTGGCTCTGCATTTTTAGCTGCATTGTCAGTATTTTTCCTGTTATCAGGTACTAAGTCCTTGTATTTTTCAGCGTTATCTCCATATTCAAGTCTAACAGCTAAACCAAGAAGCCAGTCAATTGCTTCTTGCTGATCCTGAATCTTGAAAGGACAGTTAACATCTTTGAGATACTTTTCAAAGAACTTGGGCCAGTCACTGCTGTGGATGTTTCTCAAGTTACCTCTGTCTTCAATCTTGTAGTGTCTGATTTTCTGGTCTTCAAGCCAAACGTTAAAGTTTCTAAATTCTGTTTCATCTTTGCATTTGAAGCCTGAGGGGTTGTGGTAATCCAGGGCCGTGAGCTTGCGTCGGAACATGGTCCCCGCTGCTCGCGCTGGCCGCCCGGGCC
s HiC_scaffold_1 226980282 928 + 233722169 ttttttttgcctctt-ctttaaaaactttattaaagaaaacaagtaaCCACGGTGGTAAA---CTAGAACACAGTCAATTTTCTGGGATTTCTCCCTCCAAA-GCGAGATTTGATTTCCAAATACATGCTGAAAGTTTAAGAGTTCCTAACTGTACTAAGTAGGTAAGAGGCTGGAAG----------TCATCTTCCAACTTTCCCCAGTCTGTGGTCTGTCTTTGTATCAGCAATAATTGTCTGGACAGCTA-TATGGCTTCATTAATTTTTGTCTGTAGCTCTTTGAGTTCTTCTCTATGCAACAATCG-AAAATTTGAGCAGCTTCATTAAGAATTGCATCTCCTGTGCCAAAACCAAGGATATGTTTGTCTAAC-CAACAGGTAAACCCTCTTTTGTTTGATTCACTTTAGCAACTGCAGCCTGTGTTAGGTGCTTCTGAATCAAAATGCAAATACCTTCCTTAAGCATTA-----------TCATGGTGCTTAACCCGAGGGAGGTTAGCCAAAGCCATTACACCGGTCTTAAAACTGGGATTATTTACATCCAAACTGATCAGTGGGTCTACATTTTCAGTTGCATTGTCAGTATTTTTTGCATTGTCAGGTGTTAAGTCCTTGTATTTTTTAGCATTATCCCCATATTCAAGTCTAACAGCTAAGCCAAGGAACCAGTCAATTGCTTCATGTAGATCCTGAATCTTGAAAGGACAGCCAACATTTCTGAGACACTTTTAAAAGAACTTGAGCCAGTCACTGCTGgagatgttttttaaattacctCTGTCTTCAGTCTTTCAGTGTCTGATTTTCTGGTCTTCAA-CCAAACAATAAAGCCTCTAAATTCTGCTTCGTCTTTGCAGTTGAAGCCAGCAAGGTTGTGGTAGTCGAGAGCCATCAGCTAGCATCAGAACACGGTCCCCGTTTCTTGCTCTGGACCCCTGGGCC

a score=5679
s chr3            88579325 130 + 160039680 CAAGGAAAGGCTATATCAGCTACTTCAGCCTTAAAACAAAGTCGGCGACTCTTTGAACTTTGAAATTGTGCCTATGCAGCTTATTTCGTTTTAGTT--------TAAACAGAGGGGTTT--TCCATGGGGTAAGCATTAA
s HiC_scaffold_1 222599705 137 + 233722169 CAAGGAGA---TACATCAGCTTCTCCAGACTTAAAACCAAGTTAGTGTCTCTTTGGTCTTTAAAATTGTACCTATATACCTTCCTTTATTTTCGCTTAATCAAATAAACAAGAGGGTTTAATCCATGAGGAAAATGTTAA

a score=6107
s chr3            88761801 208 + 160039680 ATGACCTCTCCGATGACGTCATCCCGAGAGAATCGATCAAAGCTGAGCACCAGGAAATGCAGCACCAGGTCCTGCAGCTGGCTGTACGGGATGCCGTAGAAGGTGAAGGTCTCATCGAACACCGGGTCCAGCGTCTTGCGAAGCACTCGGGTCTTCACTCGATGCCGCTTGTCCGGGAGAATGGTCATTTTGATGTAGGGATCGGAGC
s HiC_scaffold_1 119766474 205 + 233722169 ATGACCTCCCCAATCATGTCATGGCGGGAGAAGCGGTCAAAGTCAAAGACACTGAGGTGCAGCTTGCGGTCAGCCAGCTCCTCATAGGGCA---CAGGAAAGTGGAAGTTTTCATCAAAGGTGGGGTTCAGGGTCTTGCGGTGCACCCGGGTCTGCAGCTTGCATTTGCGGTCCGGCAGGAGGTAGATCTTGACATAAGGGTCAGAGC

a score=11216
s chr3            88972277 311 + 160039680 AGATGCTCACATGAGGATGACTTTGAGTAAAAGTTC-CAAACAGTACTATGAAGATAATTGATATTTAGGCTT-TAAAATGCTGCAGGTTAGAATTCCTTATCAAAGACCACATTTAAAAATAAAT-TGACTTGAGT------TCTAGAAAC--------------TGTAAAAGATAAAAAGTTTTCTATTGTCTATAA--------------------TTTTAAAAACTGCATAGATCTTCAT----AGAATTGGCTGTACAAGAGTATTCCTCTTGCACAGCATTCCTTTTTACTTCATATGCAG----------CTGTTATAGGATTTACTTGTTAAAGCACTACAAGGAATCTCTGTGAGGAAG
s HiC_scaffold_1 101887041 364 + 233722169 AAATGCACAC-TGATCaggactttatttaaaaattagcaaacaaTACTGTAGAAACA-TTGATATGTAAAATTCTAAAATGCTGCATCTTAGATTTAGTTGGCAAAGACCACATTTAGCAATAAGCATCAGTTTAGTCTTCCATGTAGAAACCAGATACACTAatctgtaaaaaa-agaaaatttcctattGTTTGAAAATACCAGTTTAAGTGTAAGATTGTAAAAA-TGCATAGATCTTCAATAAAAGAACTGGCTGTACAAGTGTACTCCCCTTTCACAGTATTCCTTTTTACTTCATATGCAAGTTACTGGTTATGCTGTAGGATTTAACTGTTACAGCACTAAAAGGCAACTATTTAGGGAAG

a score=8325
s chr3            89088990 372 + 160039680 CACACTCACTTGAGGAGGCCCAGGATGAAGGCGTGGAAGCGGCTGCGGCTGCTACTCAGAGGGGCCAGTCGGCTGACCTGGCTGTACAGAGATCCCATCGAATGTGTGCAGGAACCTGA-GGATGGG----GGCAAGGGTCAGCCAGGTCCGGGCCCTGCTCCCG----------------TCGGATCCCACTC---CCTTGTGGCTC--ACCTGGTTTCACAGATGCCTCCACCACACTCCAAGGGCTGCTCCTCCGCTGTCCAGTGATGAGGTCCTTCCGGAATGGCTTCAGCCCATCAGCCACCAAAGCATGGAGGGCCGGGCAGAGGGTGGTCAATACCAGATGCCCCACATCTGGGCTCAGTCGGCTATCCCCCAATTGAGCCTGGGAACAGC
s HiC_scaffold_1 177794874 385 + 233722169 CACACTCACTTGAGCAGGCCGAGGATGAAGGCATTGAAGCGCATGGTGTGACTGGTGAGCTCCGGAAACTGGCTGACTTTGTTGTACAGGC-------------CGTGCAGGACCTTGGTGGATGGGCCTGGGAAGGAGACAAGGTTGTAGGGGTCCAACTTCCAGAACCCTCAGTCAGTCTGGGGTCCCCATCTTGCCACCCAGCTCTTACCCAGCTGGGTGGATGCTTCCACCACACTCCATGGCATGTTCTTGCGTTGTCCAATGATGACATCTAGTACAAAGGCCTTGAGCCCATCCTCCAGCACGGCCTGGACTGCAGGGCACAAGTACTTGAGAACAAGATGGCCGATGTTGGGGCTCACAGAACTGTTTCCCAGCTTTGCCTGCAGGCGGC

a score=5054
s chr3           89700469 201 + 160039680 gtccctctatattagtaattactttatatataaatggattaaaccctt--------tatgtgaaaggcagacttgaccgcagttaaaaacacacgagtcaaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATG
s HiC_scaffold_1 52067483 200 + 233722169 GTACCTCCCTAGGAGCAGTGAATTCA-ATATATGTGAATTTAACATTTGCAGTAACTTTGTAGAAGGTAATTACAAGAAtgatgaaaatca--------ataaatagtcATTTATCATTTAATGACAGGGATACATCCTGAGAAGTGCATCATGAGATAAGTTTGTCATTGTGTGAACACTATAGGGTGTATTTATACAAACCTAGATG

a score=3835
s chr3            89700541 126 + 160039680 agttaaaaacacacgagtcaaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAG
s HiC_scaffold_1 153578559 122 + 233722169 agataaagaaaaatgtagtaTATACAGCTG--CATTGCTTAGTAATGGGGATACCTTCTGAGCAATGCATCATTAGGTGATTTTGCTGCTGTGTGAAGCTCATAGAA--TATTTACACAAATTTAG

a score=4519
s chr3            89700560 359 + 160039680 aaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATGATGCGTCGCTG------AACACGG--------TGAAAGCATGCGATGCAT---------------GAGGTTGCTGCCTGCACAGCATGGCATGCCGTTTACAGCAGACTCCTCCATTCATCATAGGAGTACAGC-TGACATAGCAATGGAAGTGTGGTATAGGAAACGCATAAGGCAGCCGCAGAGTTGTTTCCTAA-CACTGCTGAGTGTTGGATGCTCAACACAGCTATGGGTGTGGTGCG-TTTACACAAATGCTA------CAGGCTTGCTTTCATCAGCATC
s HiC_scaffold_1 166853022 379 + 233722169 AAATACAGTCCTGTGTTGCTTAATACCAGGTATGCAATCTGATAGATGCATCATTAGGCAATTTCTCCCTTCTATAAAGGCCATAGAGTGTACTTCTACAAACGGAGATGGCACGGGTCTGTCAGATGACATGGCCTCTTGTTGCAATCAAGAGGTACAGTAAGTGGAAATTCCAGAAGCTGCTGCCAGTGTAATACAGTGTacttttt-tagtacatgtttttgTGT-TAGTAGGAATATACTACAAAATAATGATAAAGCTATAATACAGTAAATACATAGGTAAGCC-------TTTAACATAATCATTGCCAAGTATTATAT-------ATAATTAC--GTTTGGCACATTTTATATAATTAGTATCACGGTAGCTTTGTCTATATCAGCATC

a score=4395
s chr3            89700560 125 + 160039680 aaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATGATGCGTCGCTGAACA
s HiC_scaffold_1 182620027 122 + 233722169 AAGTATAGTCATGCATTACTTAACAACAGGAACACATTCTAAGAAATGCATCATTAAACAATTTCATCAATTTACAAGCATCGTAGAATATACTTGCACAAACTAA---GCTGCATTACTAGACA

a score=3808
s chr3           89700564 106 + 160039680 ACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATG
s HiC_scaffold_1 25556150 106 + 233722169 ACAGATCTGAGTCATTTAGCAATGGGGATACATTCTGAGAAGTGTATCGGTAAGTATTACTGTCACTGAGTTAACACCATAGAGTTTTTTAACACAAACCTAGATG

a score=4212
s chr3            89700571 97 + 160039680 TGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAA-ATAAACCCAGA
s HiC_scaffold_1 153603314 98 + 233722169 TGCATTGCTTAACACCAGGGATGTGTTCTGGGAAATGCACTGTGAGGCAACTTTGTCTCTCTGTGCAAATCACAGTGTTTACTTAACATAAACTAAGA

a score=5127
s chr3            89849507 216 + 160039680 CAACTCTATGACACCCCGTACGAGCCTTCGGAGGGTGGCCAACGTGTGG---CAGAGGTGAAGA-CGCGGCCAGC-----------AGACAGCAGGCTACCAGAGGAGGATGATCGGCCCGCTGCTGAGTATGAACAGCCCTGGGAGTGGAAGAGGGAGCAGATCGCGAGAGCCCTGTCAGGTGAGGGTGCAGTGCCTGCCTCACCAAACACAGCAGCGCTCTGGGCTCCC
s HiC_scaffold_1 175263085 221 + 233722169 CAACTATATGACACCCCTTATGAACCT------GAAGGCCAAAGCTTCGACTCTGACTCGGAGAGCACGGTCAGCCCTCGATTGAGGGAAAGCAAGCTGCCCCAGGATGATGACAGGCCTGCTGATGAGTACGACCAACCATGGGAGTGGAATCGAGTCACCATCCCT---GCCTTGGCAGGT-AGGGAGCACCTGGTGCCGCTCTGGAGATAGCTgcccctcagccttcc

a score=5249
s chr3            89852337 157 + 160039680 TGGCCTTGTTTTTCTCTCCCCCTCTGCAGTTGGTATCACGGCTCCATCAGCCGAGCTGAGGCCGAGAGCCGACTACAGCCCTGCAAAGAAGCCGCTTACCTGGTCCGGAACAGTGAGTCAGGGAACAGCAAGTATTCCATTGCACTGAAGTAAGTGC
s HiC_scaffold_1 175279904 153 + 233722169 TGACCACACTCCGCTCTCTCCC----CAGCTGGTATCATGGAGCCATCAGCAGAGGGGATGCTGAGAATCTGCTGCGTCTCTGCAAGGAGTGTAGCTACCTCGTGCGGAACAGCCAGACCAGCAAGCACGACTACTCCCTGTCACTGAAGTGAGTAC

a score=6553
s chr3            89854518 181 + 160039680 TTCTATCTCCAGGACGAGTCAAGGGTGTGTCCACATCATAGTGGCTCAGACAAAAGACAACAAATACACACTGAACCAGACGAGCGCTGTGTTTGACAGCATCCCTGAAGTGGTACACTATTACTCCAATGCAAAGCTGCCTTTCAAAGGAGCAGAGCACATGACCCTTCTCCATCCAGTG
s HiC_scaffold_1 175302465 178 + 233722169 TTTTGTTCACAGGAGCAACCAGGGCTTTATGCACATGAAACTGGccaaaaccaaagagaa---atataTTCTGGGTCAGAACAGCCCCCCATTCGACAGTGTCCCGGAAGTCATCCACTACTACACCACCAGAAAGCTGCCCATCAAAGGAGCTGAGCACTTGTCCCTGCTGTATCCTGTG

a score=3809
s chr3            89895887 68 + 160039680 CAACAAAACCATCAGACAGCACATTTCTTAGAGCACGTCCCCATTATGAAGCGATGCATAACTGCCTA
s HiC_scaffold_1 223625101 68 + 233722169 CAACAAAATTGCCTAGCAACACATTTTTTGGACCACATCCCCATCGTTAAGCCATGCATGACTGTCTA

a score=4770
s chr3           89941208 161 + 160039680 TCTTCCTGCGCAGGCTCTCGATCCAGCTGGAGCTG-----GAGCG--------CGTGCTGAAGCTGGAGAGGGCCAGGGAGCTAAGCCGCATGTTCTTGCCAGACATAATGAGCTCCCCAAAACCTTCCTGATGAGAGAAGGCATAGCCAGAGCGCCGAGAGCCTG---TGCGGCCC
s HiC_scaffold_1 42832372 173 + 233722169 TTTTCTTACACAAATTTTCGAGCCAGCTAGTGCTATTATAAAGCGGCTTTTCCAGCCTTGATGTTGGGGGTGGATTTCTCGCT----CGCATATTTTTTCCAGATGTGATAAGCTCTCCATAACCCTCTTGGTGAGCGAAAGCGTAGCCAGATCTTCTTGAGCTTGACCTGCGGCTC

a score=4225
s chr3            89941273 100 + 160039680 GAGCTAAGCCGCATGTTCTTGCCAGACATAATGAGCTCCCCAAAACCTTCCTGATGAGAGAAGGCATAGCCAGAGCGCCGAGAGCCTGTGCGGCCCACTC
s HiC_scaffold_1 177870181 100 + 233722169 GACCTCAACTTCGTCATCTTGCCGGACGTGATGATGGCCCCGAAGCCTTGCTGGTGGGAGAAAGCGTAGGCAGAGCGGCGGAAGCTGGGGCGCTTCAATC

a score=8909
s chr3           89943275 200 + 160039680 CCCTAGAACAGATATGAATCATCATTGATTAAGAAGGATGCCACGGGTACTCACCCACAAACCGGAACTGGTTTGGGAACATGTCAAAGAGTCCATTGCTGTGCATGGCAAAGAGGATGGCGAAGTACACTGCAAGGCTGCCCCAGATGAAGAAGTGATTGATGGCTGTCCAATAGCCTGTATCCAGCCCAATCTGCAAA
s HiC_scaffold_1 42836929 196 + 233722169 CCCCAAAACACAAATGAATGAA----GCataaaacaggagacattaaaacTCACCAACAAATGGAAATTGGTTTGGGAACATTCCAAAAATGCCATTACTGTGCATGGTAAATAAGATGAAGAAGTAAGTAGCAATGCTGCCCCAGATGAAGACATGGTTAATGACTGTCCAGTAGCTGGTATCCAAGGCTATCTGTCaa

a score=5372
s chr3            89943324 152 + 160039680 CTCACCCACAAACCGGAACTGGTTTGGGAACATGTCAAAGAGTCCATTGCTGTGCATGGCAAAGAGGATGGCGAAGTACACTGCAAGGCTGCCCCAGATGAAGAAGTGATTGATGGCTGTCCAATAGCCTGTATCCAGCCCAATCTGCAAAG
s HiC_scaffold_1 177871329 152 + 233722169 CTTACCTAGGAACTGGAAGATGTTGGGGAACATTAGACACAAGCCATCACTGTACAGGAGGAATAACATGCAGAAGTAGAAACCCAGGCTCCCCCAGATGAGGAGGTGGCTCATCACTGTCCAGTAGGTGGTCTTCAGGGCAATCTGAAAAG

a score=11712
s chr3           89943610 261 + 160039680 TACCTGCACACTGACCACAATGACCAGCGATGTGGCCACAGTGACTGCAAAGGACTGGTAGTCTGCCAGTTGGGTGCCATCATCCCGAGTGGCCTCCGCAAACACCCCATAGGGGATGAAGAACATGAGCACAGAGGTGTAGATGCCCTGGGCGATGCAGATGAAGAACTCTCGCTTGTTGAATAGGAGGTTCAACTGGCCTGGCTCGTACAGTTTAGGGTACTCCATGCTTCGCTGTTCCGGGACATCCTGTGAGGGGAG
s HiC_scaffold_1 42847789 261 + 233722169 TACCTGCACACTGACCACGAAGATCAGAGAAGTGGCCATGGTGACGGCAAAGGACTGGTAGTCAGCCACGTGCTGCCCGTCTTCTCCGGCCGCGTTGTAAAAGGCCCCGTAGGGGATGAAGAACAGAGCTAACGAGGTGTAGACTCCATGCGCCACGCAGATGAAGAATTTACGCTTGTTAAAAAGTATGTTCAGCTGCCCAGGTTCATAGAGCTGGGGACAGTCCATGCTGTTCTGGTCACTCACATCCTGTAAACAGAG

a score=4228
s chr3            89944102 97 + 160039680 CCATACCTGGTCAAAGACGCCCATGGCTAGGACGGGGAGGGAGGTGTACACGATGTTATACAGGGTGATGAAGTACTGGTCATAAACGGTCTGGAAG
s HiC_scaffold_1 177873814 97 + 233722169 CCTTACCTGATCAAATAGACTCAAGCCCAGGACAGGGAGGGAGGTGTAGATCAGATTGTAGCAGGCGATAAACCAGCTATCATAAACTGTCTGTAAG

a score=5455
s chr3           89944103 100 + 160039680 CATACCTGGTCAAAGACGCCCATGGCTAGGACGGGGAGGGAGGTGTACACGATGTTATACAGGGTGATGAAGTACTGGTCATAAACGGTCTGGAAGAGAA
s HiC_scaffold_1 42850685 100 + 233722169 cGTACCTGGTCAAAAATCCCCATGGCCAAAACTGGTAATGATGTGTAGACAATGTTGAAAAGCGTGATGAACCACTGGTCATAAACAGtctgaaaagaaa

a score=12519
s chr3            89944992 237 + 160039680 CTACCTGGGCTGAGAAACCGCAGAAGAAGCCAAACCAGAAGTGGACCATGGTGAACGCAAAGTTCTTGTAGAAGAAATAGCAGAGGAACTTGCACATGCGTAGGTAGGACCAGCGCCCATGCACCAGCAGGAGGCGTTGCAGGAACTTGAACTGTGAAAAGGAATAATCGGAAGCCAGGACAGCCTGGATCCCTTCCTGCCCACTGATGCCCACACCAATGTGAGCAGCTGCAGAGA
s HiC_scaffold_1 177875342 237 + 233722169 CTACCTGAGCAGAGAACCCGTTGTAGAAGGCATACCAGAAGTGCACCAGGgtgaaaacaaagtttttataGAAGAAGAAGCTGAGAAACTTGCACATGCGATTGTAAGTCCAGCGGCCATGGACCAAGAGAAGACGCTGAAGGTAGTGGAACTGGGAGAAGGAAAAGTCACTGTTGAGCATGGCCTGCATCCCCTCCAGGCCACTGATGCCGACTCCAATGTGGGCAGCTGCAAAGA

a score=14885
s chr3           89944994 689 + 160039680 ACCTGGGCTGAGAAACCGCAGAAGAAGCCAAACCAGAAGTGGACCATGGTGAACGCAAAGTTCTTGTAGAAGAAATAGCAGAGGAACTTGCACATGCGTAGGTAGGACCAGCGCCCATGCACCAGCAGGAGGCGTTGCAGGAACTTGAACTGTGAAAAGGAATAATCGGAAGCCAGGACAGCCTGGATCCCTTCCTGCCCACTGATGCCCACACCAATGTGAGCAGCTGCAGAGACAAAAGATG-------------AGAGGAAGG-------------GGAAGGTGACCGTCTACTTCAGATCT---------------------------------CATCA---------------------ATTTCAGCCCCACTC-------------------------------------------------CTTACCCCTCCCACGAAGTGACA----------------GCCCCGCCTCTC--------ACTCCTCCCATCCAATTACAGCCCTGCCCCTCACTCCTCCCA-------------------CCCAAT-TACA----GCCCTGCC--CCTCACT--------------------------------------------------------CCTCCCACCCAGTGA-----------------CACCCCACCCCCCACCCCCCACTCCTCTCTGGT--------TCTGAGACCTTACAGAGTCCA-GCCAAGCCCATACT--------------CACTTTTAATCATGCTGACATCATTGGCTCCATCCCCAATGGCAAGTGTCACTGCCTTCTTGTACTTCTTAACCAGTTCCACCACTTGTGCCTTCTGCAGGGGTGTCACTCGACAGCAGATGACAGCTTTGCAGGCACATGCTGTCTCCAGAAACTCTAGCTCCATATCAGCCTCCAAGGCATGGGCCTGAAACAGAGAAACAGA
s HiC_scaffold_1 42866212 960 + 233722169 ACCTGGGCTGAGAAGCCACAGAAGAAACCAAACCAGCAATGCACGAGTGTAAATGCAAAGTTCTTGTAGAAGAAATAGCGCAGGAATTTGCACATTCGGAAGTAGGACCACCTTCCGTGGATGAGGAGAAGCCTCTGCAGGTATCTAAACTGGGCAAAGGAGTAGTCGCTGGCCAAGGCTGCTTGAAGCCCTTCCTGGCCGCTGATGCCGACGCCGATGTGAGCACCTGTGAGGATGAGAGAGACTTGATCGTTCCCAAAGGGAGGCAGAGCCTCTTCAGGAAATTTACCACTTACTGAAAATCTGTGACTGAACAGTTACCCTTCTCTCACACATGGCCTCATGAAATACTCAGGACGACTAGATTCCTACCCTAGTTGTAGGTAAAAGGAAACCGGGCTGAGAAAAGCCTGGTAACTTTCATAGGGTTTACAATTCACAAACAGGAACAAAAGAGGTGGATGCAGGTGTCACCTTGAGGCGCTGGACTTTTTTCATCTA--TGCAGCA--GCTCCTTAGGCCGCTAAGAGGTGGCCAGTGAATTTTCCTAATCTACAAAGTGCGCAGCTGACCTCATTAAAGACAGATCACCATATGAATGGTAATAATGGTGGAAGCACTGGATTCAAAAGGATCCCAGACCCAGGGACCTAAGAAGCTAAGAGCCACGGCACAGTTCAGTTTTCACGCGGTCCCAGCACACATCGTCAGAGGCTGAGCCGGGTGCATGGAGAGCCCCTTCTGAACGAACACCTCGTACTTTTAATCATGCTGACATCGTTGGCCCCATCGCCGATGGCCAGAGTGACAGCATTCCTGTGCTTCTTCACCAGTTCGACCACTTGCGCCTTTTGGAGCGGGGTGGTTCTGCAGCAGACCACGGCCTTACACAGGCAGGCGAGTTCCAAGAAATCATGCTTGACGTCGCTCTCAAGGGCATGGGCCTGGAACaggcaaagaaa

a score=11287
s chr3            89945470 311 + 160039680 CCCATACTCACTTTTAATCATGCTGACATCATTGGCTCCATCCCCAATGGCAAGTGTCACTGCCTTCTTGTACTTCTTAACCAGTTCCACCACTTGTGCCTTCTGCAGGGGTGTCACTCGACAGCAGATGACAGCTTTGCAGGCACATGCTGTCTCCAGAAACTCTAGCTCCATATCAGCCTCCAAGGCATGGGCCTGAAACAGAGAAACAGAGTC----------------------ACAGTG---------TTCCCAGAGCACCCCTC-------AGCTCTCTGGTCCCTTGATGATCACAGCCCCTCCCTCTCTCAAGT---------CAAGGGAAGTTGAGAGCAAGGTAAGAT
s HiC_scaffold_1 177876941 356 + 233722169 CCCTCACATGCCTTTGATCATGCTGACATCATTGGCCCCATCCCCGATGGCCAGTGTCACCACCTTCTTGTACCTCTTCACCAGCTGTACCACCTGGGCCTTCTGAAGGGGTGTCATCCGGCAGCAGATTACTCCCTTGCACATGCAGGCTACTTGCAGCAGCTCCAACTCCAGGTTCTCTTCTAGAGCACAGGCCTGCAGCACCAGGACACACTCATTCTTCAGACTGCCCAAAAAGACACTGGGTAGGACCTTCCCAGGCCCTCCCTCCTCTCCACACTCTCCTGTCCTGCGAGGA--ATAGGCGAAACTTCTCCCAGGTACTCACCCCCAGGGGAAGTCAGACCCCAGGTCAGAT

a score=4072
s chr3            89946152 153 + 160039680 GTTCTGGTTCTGCAGCCTCCGCTTACCTCAGCTCCTCTCGCACCTCCAGGACAGTGTGGCCTGTGACTACAAACACCTCTGTCATGTCGTCAGTCAGCATCTTACAGGAGTAGCCAATGTTCACAGCTGTCTCTGCCAAGACAGA-ACAAAGGT
s HiC_scaffold_1 177878131 154 + 233722169 GTCCAGGGATTGCATCCCACCCGTACCTGAGCTCTTGACAAATTGTCTCATAATTATTGCCTTGCACCATGAATACCCCATCCATATCTTCCTCAAATATACTACAGGAGTAGGCAATGTTCACAGCAGTCTCTGTGAGGAGGGAGACACAGGT

a score=5996
s chr3           89946160 152 + 160039680 TCTGCAGCCTC-CGCTTACCTCAGCTCCTCTCGCACCTCCAGGACAGTGTGGCCTGTGACTACAAACACCTCTGTCATGTCGTCAGTCAGCATCTTACAGGAGTAGCCAATGTTCACAGCTGTCTCTGCCAAGACAGAACAAAGGTGCTGCAG
s HiC_scaffold_1 42877447 150 + 233722169 TCTACTGTTTCTCTCTTACCTGAGCTCTTCTCTCACTTCCTCAACGGAGTTCCCCGCTATCACAAACACATCATTCATGTCCTCGGTCAGCATGTTGCAGGCATAACCAATGTTGACGGCAGTTTCTG---GTGCAAAATAAAGCTACTTCAG

a score=5898
s chr3           89946423 118 + 160039680 TCACCTTGCTTATCTCCTGTTAGCACCCAAATCTTGATGTTGGCCAGAGTCAAGAGGGCAATGGTCTCTGGGACTCCCTGCTGAAGCTTGTCCTCAATGGCCGTGGCACCCAGCAGCT
s HiC_scaffold_1 42882810 118 + 233722169 TCACCTTGTTTGTCTCCTGTTAGAACCCAGATCTTAATATTGGCCAGGGATAAACTTGCAATCGTTTCAATTACACCTTCTTGTAACTTATCTTCCACGGCAGTGGCACCTAGGAGCT

a score=5550
s chr3           89946621 176 + 160039680 TACCATCATGTCACTCTCAACCTCTTCATAGA-TGCTGGCTAGCCTGTCCTCTCGGCTGTCTTGGGCCAGGC--------TAGCCTGGAGGCGTCTCCTGGCCCACTCCTCATAGTACTCTTCATCCAGGTCTTTGTAGGCCAACACCAGGGTCCTCAGCCCGTCCCCTGCATACTCCTGGAGGA
s HiC_scaffold_1 42883724 176 + 233722169 TACCATCAGGTCCCTTTCGATTTCCTCATACAGTGCCGA------TATCTGCTCGTCCCTCTCATGGCTGGCAGCACTGGCAACCTGGAG-CATCTTATG--CCATTCCTTGAAGTATTTGTCCTCCAGATCTCTGTAGGCGATCGCCAAGGTCCGAAGGCCTTCCCCTGCGAACTCCTGCAAGA

a score=5509
s chr3           89947770 165 + 160039680 GAGATGGCAGAAG-------------CCCCG--GGCCAGCACACCTACATTCAGATGGTCAGTGGTGCTGCTGA--GCAGCTCCTGGGTAGGAGGGTGGAGCCTGTCTAGCAGGATTGTGTCAGCCCCTTTGCAGTAGAGTCGTATCTTCCCCTCTGGATTCCGAACTGTGAATGGCACAAG
s HiC_scaffold_1 42887009 180 + 233722169 GAGATGGCACAGGGGCCACTGTACCACCCTGAAGGCAGAGACACTTACGCTGAGATGGTC--CGATGTCACAGACAGAAGGTCTTTGCTGGAAGGGTGCAGTCTTTCAAACAGGATGGTGTCTGCTCCTTTGGAATAAAGTTTTATCTGCCCCGCTGGGTTTCGAACTGAAAAGAAAGCAAG

a score=9073
s chr3           89948027 221 + 160039680 TCCCTGGTATTGGCCTCACCTATGACTGACATCCGCTTGCGAATGTTGTTGAAGTCCAAGATGGCCAGCAGCTGGTAGGTGATGGCTGTACCGAGCTCATGGACAGTGATTGTTTTAGGGGTACGAGAGCGGAACACAAAACCAAAATTCCTGGCTGCGGTGACCAGAGCGCCCTCATCTGGAGACTGAGCTTTGTAGTACAGCTCTCCTGGTAGGGAAAA
s HiC_scaffold_1 42893963 221 + 233722169 tctcaGCCATCCACCATACCTATGATCGACATCCTTTTCCGGACATTGTTGAAATCCAAAAAGGCGAGCAGTTGGTAAGTAACAAGTGTTCCCAGTTCTTCTATTGTGATTGTCTCCGGAGTCCGAGACTTAAAAATGAAGCCACAGCTTTTGGCAGCAGTTACCAGGGCCCCTTCATCAGGTGACTGAACTTGGTAAGTTAGATTTcctagaaaggaaaa

a score=10343
s chr3            89948041 246 + 160039680 CTCACCTATGACTGACATCCGCTTGCGAATGTTGTTGAAGTCCAAGATGGCCAGCAGCTGGTAGGTGATGGCTGTACCGAGCTCATGGACAGTGATTGTTTTAGGGGTACGAGAGCGGAACACAAAACCAAAATTCCTGGCTGCGGTGACCAGAGCGCCCTCATCTGGAGACTGAGCTTTGTAGTACAGCTCTCCTGGTAGGGAAAAGGAGCGTGCGCA-----GTAAGTAGCCA--CCATCCCAGCCACTTG
s HiC_scaffold_1 177886247 253 + 233722169 CTCACCAATAACAGACATCCTCTTGCGTACATTGCTGAAGTCTAAAATAGCCAGCAGCTGGTAGACTTTGGTTTCCCCCATTTCGACCATTGTGATTGTATCTGACGTGCGGGCACGGAACACAAATCCAAAGTTCCTGGCAGCAGTGACAAGGGCACCTTCATCTGGGGACTGAGCCTGATACACCAGCTCACCTGCCAGGAGATAAGAAGGTGTCCACAGGGATGAGCAGTCAAGTCTTCCAAGTGGCTTG

a score=5781
s chr3           89948372 189 + 160039680 GCCCCTCAGCTCACCTTCGTTCTTTTCTTCTGACATGACAGTGTGACACAAGGAGAGGAGACGGAAGAACTCGTGCG-TGTGTGGGTCCCCCATCTTGACGGCCTCCAAGAGACTCGAGTCCCAAAACAAGAATTTCTTGTCAGCCAGTGGATTAAAGGAGAAGTCAACAGGCTCTGGTCTCTG--GAACAA
s HiC_scaffold_1 42900010 188 + 233722169 GCCCACCATTTTACCTGAGCTGTCCTCCTCGGACATCACGGTGTGGCACAGAGCCAGCAGCCTGAAGAACTCGTGCACTGTG-GGGTCCCCCAGTTTGATGGATTCCAGCAGACGGAGGTCAAAGAACTGAGATCTT---TCTGCTGGAGACTTCTCTGAGAAATCCACAGACTTTGTTTTCTGTAGAACAA

a score=13117
s chr3           89949803 263 + 160039680 CTTACCATAGCTGTGGCCGTTGATGGAGCATTTGTTGAACACCATGATGTTCTGGGTAAGGGTGCCCGTCTTATCAGAGAAGATGTACTCCACCTGGCCCAGCTCTTCGTTCAGAGTGGTGGTACGGGCCTCCGCAGGGGTCCGCTTCTTCATGCAGAACATCTTCTTGTCCCAGTTGATAAAGTAGCTGTGGCCCAAGCGGATGACTTCCACACTGCATAGGGGACAGGAGGTAAGGCCTGGGAAGCAGAGAGGGAAGGAAA
s HiC_scaffold_1 42913637 246 + 233722169 CTTACCATATATCTTCCCATTGATGGAGCACTTTTTGAAAGTCATGATGTTCTGAGTGAGGGTGCCTGTTTTGTCAGAGAAAACGTACTCAATCTGGCCCAACTCTTCGTTGAGCGTGGTCGTGCGGGCTTCAGCAGGTGCCGCCTTCCCGGGGTAATACATCTTCCGGTCCCAGTTGATAAAATAACTGTGGACCAGACGGATCACTTCCATACTGC-----------------AGCCCAGCAAAAcagggggaaaagaaaa

a score=10569
s chr3            89949805 214 + 160039680 TACCATAGCTGTGGCCGTTGATGGAGCATTTGTTGAACACCATGATGTTCTGGGTAAGGGTGCCCGTCTTATCAGAGAAGATGTACTCCACCTGGCCCAGCTCTTCGTTCAGAGTGGTGGTACGGGCCTCCGCAGGGGTCCGCTTCTTCATGCAGAACATCTTCTTGTCCCAGTTGATAAAGTAGCTGTGGCCCAAGCGGATGACTTCCACACT
s HiC_scaffold_1 177903644 214 + 233722169 TACCATAGACCTTTCCATTGATGGAACACCTATTGAAGGTCATGATGTTCTGAGTCAGGGTCCCCGTTTTGTCAGAGAACACATATTTAACCTGGCCAAGCTCCTCGTTAAGAGTGGTAGTGCGGGCCTGTGCCGGGGTGTTCTTTGGTGCATAGAACATTTTCCGATCCCAGTTGATGTAGAAACTATTGCCCAGTCTTATTATTTCAAcact

a score=5991
s chr3            89952668 220 + 160039680 GCGTACCTGACGTACAGTGAGATGGGCACAACGGTGTTGAGGATGATGATATAGGACCAGAAGGAGAGGAAGCCAGAGA---------AGAAGGCACTGTCCACCGCCTCGTCCCAGGGCAGGTAGACCTGGAAGCGCGTCCCAACTTCGTGCTCCCAGATGGCATTACCGATGGCCAGGATCACCCCCATGCAAACCAGGAACCCAAAAATCTG---AGGAGAAAGGAAAA
s HiC_scaffold_1 177905458 223 + 233722169 GCCTACCTGATATAGAGGGAGATGGGCACCATGGTGTTGAGAATAATGATGTAGGACCAGTAAATGAGTGTGGCGGATACAACTGATGAAGAGACATAGTTT---------TCCCATGGCAGAAAAATCTGGAAATAGTAGCCTATCTTGCTCTGCCAAATGCCATGACCAACTGCTATGATAAAACACATGATGGCTAAAAGCAGGAAAatctatataaaacaaaagaaaa

a score=8632
s chr3           89952671 233 + 160039680 TACCTGACGTACAGTGAGATGGGCACAACGGTGTTGAGGATGATGATATAGGACCAGAAGGAGAGGAAGCCAGAGAAGAAGGCACTGTCCACCGCCTCGTCCCAGGGCAGGTAGACCTGGAAGCGCGTCCCAACTTCGTGCTCCCAGATGGCATTACCGATGGCCAGGATCACCCCCATGCAAACCAGGAACCCAAAAATCTGAGGAGAAAGGAAAAGCGCAGAAGAGGCTGA
s HiC_scaffold_1 42919790 233 + 233722169 TACCTCACATATAATGAAATGGGCACAACCGTATTGAGAATGATAATGTATGACCAGAACGTCAAGAATCCTGAGAACACGGAATTCTTCTCTTCTTTATTCCAAAAGACGAAAGTTCTGAACTGGTCTCCAACTTTTTTCTCCCAGATCAAATTTCCTATTGCAAGAATAATTCCCAAGCATACCAAAAAcccaaaaatctgaaataagaataaaaggcTAGTTAAGGCTAA

a score=4342
s chr3            89954196 118 + 160039680 CTCACCCAGAGTACCAGGGTGTTCATCAGGCGGTCGATACTTGTTCTCTTGAACTTCGTCCTGCCGCTGTTCTGCATCAGCTTAGTATCAGGACCT--GGAAAACAACGGGGAGCCAAAT
s HiC_scaffold_1 177911190 120 + 233722169 CTTACCCAGAGCACAAGGACGTTCAAAAGTTGGTCCATTTGCGTTCGTTTAAAGATGGCTTTTCCACTGTTCTGCATTAATTTGGTGTCTGGCCCTAAGCAAAACAAGGAGACATCAAAT

a score=5587
s chr3           89954196 100 + 160039680 CTCACCCAGAGTACCAGGGTGTTCATCAGGCGGTCGATACTTGTTCTCTTGAACTTCGTCCTGCCGCTGTTCTGCATCAGCTTAGTATCAGGACCTGGAA
s HiC_scaffold_1 42923249 100 + 233722169 CTTACCCAAAGCACTAGTGTATTCATCAATCTGTCTATGCTGGTCCGTTTAAACTTTGTCTTACCACTGTTCTGCATGAGTTTAGTGTCCGGACCTGCAA

a score=8261
s chr3           89954416 203 + 160039680 CCGAGGGACCCCAGGAGGCTCACCTGCAAAGATGACCAGCCCGAAGCACCACTCAGTGTTTCTCAGCACACAACCTCTCAGCAGCATGTTCTGGTTGCTCAGGGGGAACTTGTTTTCCTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTTGTTGTTGGGTGGTTCGCAGATTACTTCGCCTGGATGGGAGACAAAAGTGC
s HiC_scaffold_1 42929621 196 + 233722169 CCGAGGGCCACAAGTAG---TACCTGCAAAAATAACCATCCCAAAGCACCAGCTGGTGTTTCTCAGGACGCAGCCTCTCAGGATGATCATCTGGTTGCTGAGCAAGTGCTTGCTGTCCTTCCAGGAGAGGACTCCCGTGAACTTATCTAATTTGTTGTTAGGTGCCTCACAGACCACAGTccctaga----aaataaaaaggc

a score=5454
s chr3            89954429 186 + 160039680 GGAGGCTCACCTGCAAAGATGACCAGCCCGAAGCACCACTCAGTGTTTCTCAGCACACAACCTCTCAGCAGCATGTTCTGGTTGCTCAGGGGGAACTTGTTTTCCTTCCAGTACAGAGTCCCACTGAATTTGTCCAGCTTGTTGTTGGGTGGTTCGCAGATTACTTCGCCTGGATGGGAGACAAAA
s HiC_scaffold_1 177913490 186 + 233722169 GGAAACCTACCAGTATAAACCACTACGCCGTAGCACCAGTCTGTGTTTCTGAGGATACAGCCTCGGAGAAGCAGCTTGTCATGGTCGAGTAAGTACTTCTGCCCTTTATAAGTCAGGATGCCTGTGAATCTGTCCAACTTGTTATTGGGAAGGTCACACTTTATCTCTCCTGTAGGAAAGTAAAGA

a score=4063
s chr3            89957290 100 + 160039680 CACTCACCCATCCAGCTCTGCGGTCTCTATGTAACACAGCCCGTGGGGTTCGCTGCTGGAAAGGAGGAGGAGGTCCGCCT---ACACAGAAAGTCTGATGAGA
s HiC_scaffold_1 177915957 103 + 233722169 CACTTACCCATCCAGTTCTGCTGTTTCTACGTATGCCAGACCGTGTGACTCACTGCTTGAGAGCAATAGTATATCTGCCTGAGATAAGAAAAGccagaaaaga

a score=4743
s chr3           89957291 79 + 160039680 ACTCACCCATCCAGCTCTGCGGTCTCTATGTAACACAGCCCGTGGGGTTCGCTGCTGGAAAGGAGGAGGAGGTCCGCCT
s HiC_scaffold_1 42942312 79 + 233722169 ACTCACCCATCAAGCTCCGCAGTTTCAATGTAACAGAGACCGTGGGGTTCACTACTTGATAGAAGCAGCAGATCGGCCT

a score=4458
s chr3           89957972 78 + 160039680 CTCACACTCCATTGATCAGCACCTGAGAATGACGGTTATTCACCTGGTTATCACTCTTGTGGCGGAACTGAAAGAGAA
s HiC_scaffold_1 42979240 78 + 233722169 CTTACTTGCCATCAATGAGCACTTCAGACTGCCGATTATTCACTTGATTATCACTCTTGTGacgaaactggaaaaaaa

a score=6988
s chr3           89958244 155 + 160039680 TGAGAAGAGGTGGTGACCAGAGAAAGCGGAAGGTGACAACTCACATAGTCATCGGTGGCATCTTTAACAGCTGTGATGGTGAGGACGAGAACCAAAGGCACAATGGTGGTGAACCAGGACAGGGACGAGATCTGGGGGATTAACTGAAAAGAGCA
s HiC_scaffold_1 42983367 149 + 233722169 TAAGAAGATGCAGTT------GGAACCGAGCAGCAAGTACTCACATAATCATCAGTGGCATCTTTCCCAGCGGTCATAGTGATCACCAGGACCAGAGGCACAATGGTGGTGAACCAGCTCAAGGAGGAGATTTCTGGAATTAGCTGAAACAAACA

a score=4954
s chr3            89958263 140 + 160039680 GAGAAAGCGGAAGGTGACAACTCACATAGTCATCGGTGGCATCTTTAACAGCTGTGATGGTGAGGACGAGAACCAAAGGCACAATGGTGGTGAACCAGGACAGGGACGAGATCTGGGGGATTAACTGAAAAGAGCAGAGA
s HiC_scaffold_1 177921670 140 + 233722169 gagggacagaaggaagaaacCCTACCAAGTCATCGATGGCATCTTTCACAGCTGTTATGGACAGCACCACCATCAGGGGTATCACAGTTGTGTAACTTGCCAAAGAGGAAATCTGGGGAATCATCTGTAAGAGGCAAAGA

a score=6039
s chr3           89958504 120 + 160039680 TTACCTGCAGAATGAGAAGGAACAGGAAGTAGGTGTTGGCAACTTCCTGGAACTGCTCAAAGAGGTTGACAGGCAGGAAGGTGACAATATTGTACTTGGAGGTCTTGATGCAGTTACTCT
s HiC_scaffold_1 42986710 120 + 233722169 TTACCTGTAATAtcaggaggaaaaggaaataggCATTCGCCACTCTCTGGAACTGTTCGAATAAATTAATTGGCAAGAAGGTGAGAAAGTTGTACTTGGATGTGTGGATCCGATTATCCT

a score=5387
s chr3            89958505 120 + 160039680 TACCTGCAGAATGAGAAGGAACAGGAAGTAGGTGTTGGCAACTTCCTGGAACTGCTCAAAGAGGTTGACAGGCAGGAAGGTGACAATATTGTACTTGGAGGTCTTGATGCAGTTACTCTA
s HiC_scaffold_1 177922558 120 + 233722169 TACCTGTAGGAATACCAAAACTAGGAAATAGGCATTTGCAAGTTTCCGGAACTGTTCAAATAGGTTCATGGGCAGGAAGTTTAAGGCATTATATTTTGAGGTCTTGATGGCATTGTccta

a score=3795
s chr3           89958984 67 + 160039680 ACTTACCGCATACTGGAATTTCTCATTGTATTCACGGTCGTTAGCCCGCGCCCTCCGCTCTTCTTCT
s HiC_scaffold_1 43011650 67 + 233722169 ACTCACCACATACTGGAACGTTTCATTGTATTCACGGTCATTGGCTTTCACGATTCGTTCCacttct

a score=7472
s chr3            90072674 184 + 160039680 CTGGCCCCAGCCTCCAGTTCTCCAGTGTTCACAGGTGAGCCCACCAACGGTCACAGCTCATGATGGAGGCCATCAAGAAAAAGATGCAGATGCTGAAGTTAGACAAAGAGAATGTTCTGGACCGAGCTGAGCAAGCTGAAGCTGAGCAGAAACAGGCAGAAGAAAGAAGCAAGCAGGTAGGTGC
s HiC_scaffold_1 177675471 178 + 233722169 CCAGCCTCGGCACCCCATCCTCACCTCCTGCCAGCCG-GCCCACCTCCA-CCGCAGCC----ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAGCTGGACAAGGAGAATGCCATCGACCGTGCCGAGCAGGCCGAAGCTGACAAGAAGCAAGCGGAGGACCGCTGCAAACAGGTGGGGGC

a score=8075
s chr3            90073713 147 + 160039680 CTCCAGCTAGAGGATGAACTAGCAACCATGCAGAAGAAGCTGAAAGGGACAGAGGATGAGCTGGACAAGTATTCGGAAGCTTTAAAGGATGCTCAGGAGAAGCTGGAGCTAGCAGAGAAGAAGGCAGCCGACGTGAGTA-----TTGGGGGA
s HiC_scaffold_1 177675929 152 + 233722169 CCCCAGCTGGAGGAAGAGCAGCAGGGCCTTCAGAAGAAGCTGAAGGGGACTGAGGACGAGGTGGAAAAGTATTCTGAAGCAGTGAAAGATGCTCAGGAGAAACTGGAGCAGGCTGAAAAGAAGGCCACCGATGTGAGTGTGGACTTGGGGGA

a score=10085
s chr3            90086443 213 + 160039680 AGGCTGAAGCTGAGGTGGCCTCCTTGAACCGCAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGTGCGCAGGAGCGCCTTGCCACTGCTTTGCAGAAGCTGGAGGAAGCAGAGAAGGCTGCTGATGAGAGTGAGAGGTGTGT-GAATCCCAAAAGAATAGGCCGGCGGGGCTTCTGGGTGGAGCAGCCCTCTCCTGCCTGGCCTGAGGTGTCCT
s HiC_scaffold_1 177678827 204 + 233722169 AGGCTGAGGCCGATGTAGCCTCCCTGAACCGCCGCATTCAGCTGGTAGAGGAAGAGCTGGACCGTGCCCAGGAACGCCTTGCTACGGCCCTGCAAAAGCTGGAGGAGGCCGAGAAGGCAGCTGATGAGAGCGAGAGGTGGGCAGGGGGCCAGGGCAAGGGGTAGGCAGGG----TGGGAGCAGGAG------CTTGGCTTTGCTGTGGTGACCT

a score=9861
s chr3            90087337 412 + 160039680 TGGGCAGCGGAACAGGAATGGGACTGGGAAGGGCGTGGTTTTGAGTGTTTGAAATGGAGTTGATGCCCAGCTCAGAATGTCATTGCTGTG-------TTCATTCTT-----TCATTCTGTTTCCGGCAGAGGTATGAAGGTGATTGAAAATCGGGCTCTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAGCTAAAGGAAGCAAAGCACATTGCAGAAGAGGCCGATAGGAAGTATGAAGAGGTGA---------GTTGCCTCTGCAGTGCGTGCGGGCCCTGCAAAGACAGTCAAGAGGGGATAGCTATCGCCCTGGCTTGATTGAGCCGTACTGGGGTCTTTTCTTCTAGGTGGCTCGTAAGTTGGTGATTATTGAAGGAGACTTGGAACGCACGGAGGAACGTGCTGAGCTGGCAGAGTCGTGAG
s HiC_scaffold_1 177678964 376 + 233722169 TGGGCAGGGGGCCAGGGCAAGGGGTAGGCAGGGTG--------------------GGAGCAGGAGCTTGGCT----------TTGCTGTGGTGACCTCTCATACTTGTCCCTCTTTCTGC--CTGTCAGAGGAATGAAGGTGATTGAGAACAGGGCCATGAAGGATGAGGAGAAGATGGAGCTACAAGAGATGCAGCTGAAGGAGGCCAAGCACATTGCTGAGGACTCAGACCGCAAATATGAGGAGGTAACGGCCCTGTCTCACTTCCTTCCTGCTCCCAAGCCTCACACCCTCAGTCACCA--------CTGATGTCCTCTCTC-------CCG----------CTTCCTTCCAGGTGGCCAGGAAGCTGGTGATTCTAGAGGGAGAGCTGGAGCGCTCAGAAGAGAGAGCTGAGGTAGCCGAGAGGTAAG

a score=5164
s chr3            90088976 158 + 160039680 ctctctcccctttttttttcttcctcttcctcttccccttttcctctc-----cttTGGTATTAAAATGTTCACAGTAAGTGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGGTAGGGCTGGT
s HiC_scaffold_1 177679686 161 + 233722169 cCCTCCCCACTGTACCATCCCCACTCTCTCTCCTCACTGTGTCCTCACACCCACCCTGCCAC--ACACCCCTGCAGTAAATGTGGGGACCTAGAGGAGGAGCTGAAAATTGTTACCAACAACTTGAAATCCCTGGAGGCCCAAGCAGACAAGGTAGCGGGGGT

a score=6145
s chr3            90089786 301 + 160039680 TTCTTTACAGTACTCTCAAAAAGAAGACAAGTATGAAGAAGAAATAAAGATTCTTACTGATAAACTCAAGGAGGTGAG-------------CTGAGGGGCTG------AGCCGCATGAACGATAGGAGGCGTTAATATTGTAATATTAATCCTGAGCCTTGCTGGCCTTGGCTCAAATGGCTTA---GAGGCACGAGAGGAGGAAGTAACCATCTTTCATTCTGTTTGTTGTTGTGCTTCCT----------------CAGGCAGAGACCCGTGCTGAGTTTGCTGAAAGATCGGTAGCCAAGCTGGAGAAGACCATTGATGACCTGGAAGGTATGGAG
s HiC_scaffold_1 177680004 304 + 233722169 TCCCTAAAAGTATTCCACCAAAGAGGACAAATACGAAGAGGAGATCAAACTGCTAGAGGAGAAGCTGAAGGAGGTGAGAGCTCTCTTCCAgttcccaggctgccctcaagcCAC---------------CCTTGTTCCCACCAGACTGTGGCTGGGAATTGTGGG-----GGTCAGGTGACTTCACTGAGGCTCTCTGGGTGg----------ccctgattcc-----ttgttatgtcTCCCAACCCATTTTTATTCCCAGGCTGAGACTCGAGCAGAGTTTGCTGAAAGATCCGTAGCAAAGTTGGAGAAAACCATTGATGACCTGGAAGGTAAAAAG

a score=6082
s chr3            90090918 196 + 160039680 TTTCCTATTTTCTAATGAC--TCCCTCTCTTCATCTGCTTCT------GACACCTTTCACTTTATCCCCTCCATCATCCCTGTGGTTCCTGTGCCTGTCCAGACGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGACGAGCTGGACCACGCCCTCAATGACATGACCTCTATGTAACTATCAGGCAGCAGCGTGG
s HiC_scaffold_1 177681269 193 + 233722169 ttcttttttctttcatcaccatccctct-ttcctctccttttccccgCAATCCCTCTCCCCACACCCCCACCTCGCTCCC-------CCTCGGCCACTCCAGATGAGGTCTATGCACAGAAGATGAAGTACAAGGCTATCAGTGAGGAGCTGGACAACGCACTCAACGACATCACCTCCCTCTG---AGCCCGCACCAGTGTGG

a score=6549
s chr3           90212932 367 + 160039680 CCTTCTGTCAGCCTTGCTTTTCCACCTGTAGGCTGACAGAGGACAGTGGAGCAGCCAACACACAAGACTACCGTTTGTGCATGGCTAAAGACCGTGGTGATTTTATAGCATCCTGGGAAGAAAAAAAAAGAGAAGAAAAATGTTAACTTCTTTTATTCCTCTCCAAGTTACCACTTCTGAACTCGTAATAAAATCAAAAATTAAGTTACAACCATTAGTACAGTTTAGTTTTCCCGCACAGCTGAAAACCACTTCCTTACCTGGGCATTTCACGTCCATAAAGTAGGAATTGGGGCTCTGCACCAGGCGCTTTTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGATGAAGGAGATCCTTTGCG
s HiC_scaffold_1 92900420 211 + 233722169 CCTTCTGTGAACCCTGCTTTTCCTCCTGTCAGCTGGCAGAAGACAGTGGAGCAGCCAACACACAAAACTA--GTCTGTGCACAGCTGAAGAT--TAGTGATTT--TAGCA--CTGGGCAG---------------------------------TAT-----------------------------------------------------------------------------------------------------------GGCCCTTCACCTTCACAAAGCAGGAATTGGGGCTCTGTACCAAatgttgct-----tgttttttcttctttttctctgagaAGGGATGA---AGATCTTTTGTG

a score=5155
s chr3            90238639 115 + 160039680 CATACCTGCTCTCCAGCCCATCTAAGTATTCTTTCTTCCGCCGCCGGCTGTCCTGAGCCGACTGCTTGTTGCGGATTTTCCTCCTGATCTTCTTGAGTATTCTCTCCTCTGCCTG
s HiC_scaffold_1 177630843 115 + 233722169 CATACCTGCTCTCCAGACCCCCCACATACACCTTCTTCTTCCTTCGGCTCTCTTGAGCGGACCTCTTGTTTCGAATCTTCCTCCGCACTCGTTTGAGAACTTGTTCCTCCATCTG

a score=6585
s chr3           90269001 158 + 160039680 TACCCAGAGGAAGACAATGAGGCGTTTCCGCTGCCCGAGTCAGTCCCTGTCTTCTGTCTGCCCATGGGGGCCACTATTGAGTGCTGGCCTGCCCAGACCAAGTACCCAGTACCTGTCTTCTCCACCTTTGTGCTCACAGGCGCTGCTGGTGATAAGGT
s HiC_scaffold_1 79427863 158 + 233722169 TATCCAGAAGATGATTATGAATCCTTTCCACTCTCAGAATCTGTACCACTCTTTTGCCTTCCTATGGGAGCCACTATTGAATGTTGGGACCCTCAAACCAAATATCCACTTCCAGTGTTTTCAACTTTTGTCCTGACAGGTTCTTCAGCGGAAaaggt

a score=8214
s chr3           90270822 187 + 160039680 TTTCAGATGATCTTCCCTCTGCATTGGCAGTGTCCCTACATCCCATTGTGCCCGCTAGTGCTGGCGGATGTGCTGAGTGCCCCCGTGCCCTTCATTGTGGGTATCCACTCCAGTTATTTCGATCTGCATGACCCACCTGCTGACGTCATCTGTGTTGATCTTGATACCAACACGCTCTTCCAGTAAG
s HiC_scaffold_1 79443771 187 + 233722169 ttctagaTGATCTTTCCTTTTCAGTGGCAATGCCCATACATTCCGCTGTGTCCGCTGTCCCTGGCTGCAGTGCTTAGTGCGCCTGTACCATTCATAGTTGGAGTTGACTCAAGGTATTTCGATCTTCATGAACCACCTCAAGATGTTGTGTGCATTGACTTGGACACGAACATGTTATATGTGTAAG

a score=6702
s chr3           90277732 202 + 160039680 AGATTCTGATGTCTAGCTGTTCCTTGTGTCATGCCTGTGATTCCCTGGTGTACGATGAGGAAATCATGGCTGGCTGGGCACCGGATGACTCTAACCTTAATACAACTTGTCCCTTCTGCGCCTGTCACTTTGTGCCCCTGCTCAGTGTCCAGACTCTTGATTCTCGACCCAGGTGCCTGGAGCAGGGCAAGTGTTATGGGAG
s HiC_scaffold_1 79490128 194 + 233722169 AGGTTTTGATGTCAAGTTGTTCACTGTGTAGCACTTGTGGAGCTCTAGTTTATGATGAAGAAATTATGGCTGGATGGACAGCAAACGATTCAAATTTGAACACAACTTGTCCATTTTGTAAAAGCAACTTCTTGCCTCTTCTCAATAT--AGAATTTAAAGATTTGA--GAGGCTCT----GCAAGGTTAGTATTATGAAAG

a score=18434
s chr3            90391399  951 + 160039680 TTCTGGCTTGTTTCATTATCACTTAAAAACAA--TTTAAAACTCGATTATCTTTGCCAAA-------------------------------------------AGAAAAAGCAA------------AAACAGAACCACAGAAAATCAGGC--------CATCTGACAGTTCTGAGGAACTTGCCTCCAGGACTCCCCTGGGCTCTGGCTCAGCTTGAAGTGCCAATGCCGGGCCAACCCAAGCATCCCAGGTGCAGCAAGAGCCTCTCACGCTGCCATT----GGGTTCTTTTCTGAAGGCTGTGGCATCTGCCCAGA-TGGGCACCGCCCACACCAGGTCAGATGCCCACTTCACACTGGTGTAATGACCACCGTCCACAGACTACAAATGCAGACTGA-------CAGGAAGCAGGGGGAAATGCC-CACTCACAC---AGCATCTGCTGTCACCCCAGCTCCTCTGCCCAGCAGCCTCTTCATCACTC-CTTTCTCTGTCCAAATGGCTCTTCG-GAGACTTGGGGAGGAGCCGGCGGCAAAGGACTTCCACCATGATCTG-CTTCTGCACAGCTTCTGGTTGCTGTGAGAACCTAC----CAGTGGGAGCAGCAGTGAAGAGGGGGTGAAAAGAGCTGG---------------------------------AGGCCCTGGGAGG-----------------------------AGAGGAGAGGTGGGGC------TGCATGGACC--------------------TTTCTCAGG----------------CTGGGGCAGGGTGGGGATCCAGG-CCTCAGTCACTGTCAGAACCCACA-GCAGAGGAGCCTTTTCGTTTTCGTTTGGTAGGCTTAGGCTTTGTATCTTCTTCCTCCTGGAAGAAATGAGGGGAGCAGAAGGCCATCACTAACCTGGACAGCAGCTGACCACACCCCACCCGCACCCATTACTCCCTCCTGTGCACTGGCTGAGAGGCTCACCGAGGCACTGCTGGAGCCTGACTCCTCTTCAGCATTGGGGGGCTGGGTAGCATTCTTTCGACTTCGAGGGCTGGACAGAGCTGCCTTCCGCCGGCTCTTGGGTGGCTTAGTGGAAGAGTCCTCATATTCCTCCGCCAGG
s HiC_scaffold_1 116841602 1009 + 233722169 ttatggcttgttttatta-cattttaaaccaacttttaaaacataattatgtttgccaaagagaataaaaaggatgAGGGGAAGAGGGCgtgaatgaaagagaaggaagaggaagaggaggcagggaaaaagaaaaatatggaatcaagaaatagaaacatttcACAGCTGTGAAGAGCTTGTCTCTGGGACTCCACTGGTCTCTGACCCCGCTTGAGGTATTAATCTCAGGCCAACCCGAGCCTCCAAGACAAGGCAA------TCCAGAGTGCAACTTTTCAGGATTCTTCCTGAAAGCCATAGCATCTTCCTAGAATGGATGATGACCACACCAAGTCAGAAATACAATTCACACTGGGGTAGATAC-GCTGACCACAAGATGTTTGttcagaagaaatcaaaacaggAAACATCAGGTAAGGACATCCCCAAACCTGAGCATCTACTCTTTCTCTAGCTTCTCTATCCAGCAGCCCTTTcgtcattttctttctctgctgaaATAGCTCCTTGTGAGACTGGCAGGGTAAT----GATAAA------------CAGTCTGGCTTTTTTGTAGTCTCTGGCTGCAGGGAGAACCCAAACAACAGTGGAAGCAGCAGCAGGAATAGGGGCAGGAGAGGTGGCATGAGGAGTGCCATGTGGCAGTTTATTAGCATAGGCTCCAGGAAGCAGCTCATTTTTCCCACTACTCAAACTTCAGTAGGGAGAGAGTGCATCCCCTATATCACCCAAGCCCCTATTACACTATGATTCACCAGGAAGGAGAGCAGTCCAACTAGGGTGGCATGGGATCACAGGGCCTCAGTCACTGTCAGAATGTACCTGCAGAAGGTCCTTTTCATTTC----TGCAGGGCTTGggttttatgtcttctttcttCT----------------------------------------------------------------------------------------------------------AAGCGCTACACGAGCCT-ATTTCTCT-cagccttgggaggctgaatggCATTCTTCCAACTTGGAAGGCTCAACAGAACTGCCTTTCACTGGCTCTTTGGTGCCTTAGTGTAAGAGTCCTCCTATTCCTTCTCCAGG

a score=8074
s chr3            90393095 170 + 160039680 CTCTGCCTCTTGCGGGGCAGGCTGTTGTTCTTGATGAGCAGCGCCTTGATGTGCTCTGCCAGCAGCTCGTCGTGCTTCATGCACCAGTGCCTCAGGATGCTGGTGGTGAACTGGTCATCAGGATGGCAGGGCCTGCTCAGCACCATCTTCACCATCTCCTCACTCGGCCT
s HiC_scaffold_1 116842788 166 + 233722169 CTCTACCTTCTGTGAGGGAGGCAGATGCTTTTGATAAGCATGAATTTGATGTGTGCTCCTGGTAGTTCATCATGCTTCATGTAC-AGTGCCACAGGATG---ATGGTGAATTGGCCACTAGGGTAGTAAGGCCAACTCGGTATCAACTTTACCATCTCCTCATTGGGCTT

a score=3340
s chr3            90393744 55 + 160039680 CTTCTCTCTCCGTAGCTGAAGCAGGAGACAGGACAGGGCCTCTGGGTGCTCTGTG
s HiC_scaffold_1 116842951 55 + 233722169 CTTCTCTCTTTGGAGCTGAAGCAGCAGGCAGGCTAGTGTCTCTGGATGCTCCTTG

a score=6170
s chr3            90394073 111 + 160039680 CCTTGTATTTGAGGTGCTGGAGAATAGGAATAATGGTCTCCAAGGGGATGTTGTGGGCCAGGAAGAGCTGCCAGGCACAGTACTGCTCAAACGTTTCCCAGTCTAGGCTCT
s HiC_scaffold_1 116843001 111 + 233722169 CCTTGTATTTGACAGGCCACAGGATGAGGATTATGGTCTTCAGGAGGATATTGTGGGCTACCAAGAGCTTCCAGGCACAAGACTGCTAAAAGGTTTTCCACTTCAGGCTCT

a score=5843
s chr3            90396412 122 + 160039680 GTCGCACATCATCCTCTTGGCAGGCCTTCATGTCCATCATTAGACAGGTGTGCAGATCACCCAGCTGGGTAGCCTGGGCAAACGACTCATACAGGTTCATCTTCCCTGCGGCGGCTTTGCTG
s HiC_scaffold_1 116843122 110 + 233722169 GCTACATGTTGTTCTCCAGGGAGGCTTTCATGCCCATCATTAGGCAGATAAACAGATCACCCTTCTGGGTGGCTTAGAC------------CAGGTTTATCTTCCCTGAGGCAGCTTTGCTG

a score=5046
s chr3            90403986 81 + 160039680 GGCACATGAAGTCCAGGAGCGTGGCAGTGATGGCTGGGTGGGGCTTCATGGAGTGATGCATGACCAGGATAGCTGGCTCTA
s HiC_scaffold_1 116843469 81 + 233722169 GGCACGTAAAGTCCAGGAGTGAGGAAATGGTGGTTGGATAAGGCTTCAAGGAGTGATGTATGACCAAGATGGTTGCCGCTA

a score=9815
s chr3            90406175 195 + 160039680 TGCATGTTGTCAGGAGCCAGCCAATGATGGCCCACCGGGGCAAGATATCAGAACTCAGCACTTCGTTAGAGGGGTGGACTACCCCACAGATGTATCGAATGAGGTCACAGCGCAGAGACTGACTGTCAGGGGTTG-AGAGGTACTGGCGCTGGAACCAGTCCTGGTACCGCTTTTGCTGGCCAAACCGCACCTGAG
s HiC_scaffold_1 116843633 196 + 233722169 TACATGCTGTCAACAGCCATCAAATGATGGCTCGCCGGGGCaagatatttgaaataataacTTCATTAGAAGGGTGTACTACCTCAAAAATACAGTAAGTAAAATCACAGAACAGAAAGTGACTGCCTTGGGTTGAAGAAATTATAGTGCTGGAACCAATCTTGGTATTCCTTTTGTTGACCAAACTGCAACCAAG

a score=4472
s chr3            90408498 119 + 160039680 CACCCGGGATGTCATGAAGAGGAGCTTCGTTTCCATGTCTGGGGTTAGACGACAGGCTAGAAATTTTCGGGATGTTCTTGACTGAAGTAGCTGTAGGATACC--TGAGCCAAATACAGAAG
s HiC_scaffold_1 116843821 112 + 233722169 CAACCAAGATGGTATAAAGAGCTTATTC---------TCTGGGTTTAGATGACATGTTAGGGATTTCTGAGATGTTCTTGACTGAAGAAGCTATAAAATACCAGTGAACTGAGGACTCAAG

a score=7767
s chr3            90409994 134 + 160039680 TACCTGTAAACTGAGGACTCAAGGCCTGAGGGTT---ATGGATGATATCTTTCCACAGTAGTTCAAATTCTGGTATCCTAGCAACA--TTCTGAAGTAATCTTACAAGGTCCCGGCCAATCATCAAACATTCCATGAAC
s HiC_scaffold_1 116843910 138 + 233722169 TACCAGTGAACTGAGGACTCAAGGTCTGAGTATTTTTATGAATACTACCTTCCTA-GGCAGTTCAAATTCTGTTATCCTAGCAACACATTCTGAAGTAGTCTTAAGAGATCCTGGCCAGCCATCAAACACTCCACAAAC

a score=5184
s chr3            90411203 144 + 160039680 TTCCCGAAGCAAGGAGATGCAGAAGTCAACTTCCTTCTGCCGAAGGGTCTGGAGCTGGGCAGTCCCATGGTGGTCCACAATAAGTCGGAGGTACGTGTACACAGCCATGGCAATGAGGATGCTGCTCTTCAGCACCCACTCCCT
s HiC_scaffold_1 116844050 134 + 233722169 TTCCTGACACAGTGCTATACTGAAATCCACTTCCTTCTGGCATAGAGCCTGGGCCTGGGCAGTCCCCTGGTGG-CCACAATGAGGTGGAAACATATTTAAACC-TCATGGTAATAAGGACA--------CAGTATTCATTCCCT

a score=5166
s chr3            90415155 91 + 160039680 ACCTGCAATCTGCTTCATAAATGTCATGCAAACGCCATCAGCTCCCAGAACTCCACTCTTTACTAGTTCCCGAACCAACCACACCAACTAA
s HiC_scaffold_1 116844239 90 + 233722169 ACCTGCAAGCTGCTTCATAAATGTTATGCAAGCACTGTTGGCTCCCAGAACCTCAATCTTC-CTTATTCTCAAACCAAATACACCAAATGA

a score=5910
s chr3            90415493 198 + 160039680 TGAGTACGGCAGGTATCTTGCAGCTTCAAGTACTTCTCCATAAGTAGCTGGTTGATCTTGTTCAGGACGATGTTCATACCATCACGACTCACCAGAGCCAAGTCCCGGTAACACTGTGTGGAATA----AGGTTCGTGAGTAGCCAGTGAATGGAGA----------TGTTGACCCCACAGCAACCATCCAAC-CCCAAAGCCTTCCTCTTAC
s HiC_scaffold_1 116844326 206 + 233722169 TGAGTACAGTAGGAATCCTGCAACTTCAGGTACTTCTCCATTAGCAG-TGGATGATTTTGC---GGATAATATTCACGCTG-CATGACTCACCATAGCCATGTCCCAGTAACACT-TCTGGGTTAGTGCAGATTCA-GTGTAGACAACAGGGAGAGGTTTGCATTGTTATTAACACCACAATACTCATATACCTTTCCAACTGTTCCTCTAAC

a score=6116
s chr3            90451137 317 + 160039680 TCCCCGCTCCCCGAGGAGCCAATAGGTTCGAACCTTGCCTTTGCCCTGGAGAAAATAAAAAGAGGAGGTTGGTTAGGGAACAGCACACCTACTGGCCCAAATCACTGGAGGAATTTAAGTTACGGGAGTGGCCGGGAGATCCTCCGGGATCT--AAGTGTCCTTCTCT-ACCTTCATTTCCACGTCACCTCGGAGCTCCAGCTCAAAACCATCGAACTCTTCCAGCACAGCCTTGGTCTCCGAAGACAAGTGGATCCTGAGGGCTGGAGAGAGCAGGGGAGGAAGGTGAGGAGCACGCCAGGGGTGGGAGCAGCAGGGGA
s HiC_scaffold_1 177571192 282 + 233722169 TTTCCGCTCTCCGAGGAGCCAGTAAGTTCGCATCTTTCCTTTGCCCTAGAGGCA-------GAGGAG--TGAACATAGGTCAAAttctttatttccc----tctct--------ttcaCTTCc---------------atcctccctttcctttccatgGCCTGCCCTCACCTTCATTTCCACATCTCCCCGAAGCTCCAGCTGGAAGCATCCCAGCTCATCCAGTGCATCCTTGGTGGTGGAGGAGACATGGATCTTCAGGGCTAGGGTG-GCAGGAG-GAATGGTAGAAAGAAGAGTCGGAGAAAAGACAACAGAAGA

a score=13612
s chr3            90454803 476 + 160039680 GAGGGCCA---TCCTACCTTCCCCATTAGACTCCATTCTTGAAGCTGTGTTGACTGTGTCTCCAAAGAGGCAGTATCGGGGCATCTTTAGCCCTACCACACCAGCACACACGGGACCTGGGAGGGGAAAAGAAAGGAACAGAGTCCAGGGAAGTCAGAGGAGGTGAGCACCCCAGAAGAGGTAGGAGTTGGGATATGTGGTCCCAGGGTGTGTGGAGAGAGACAGGGGATAAAGGTTTAGTCTCGGACTTGTTTCTGAGTTTCAGCCTCCGGAGGCCTTCCGTGGTCAGACCTGTGTGAATTCCAATGCGCAAGCGCAGCTGTTCCTGGGGCCTATGGCGGATGCGGAAGGAGCGTACAGCATCGAGCAGTGCAAGTGCCATTCGGGCTACCTCTCGGGCATGGAGCTGTCCATTCCTCACTGGGAGCCCTGATACCACCATGTAAGCATCACCAATGGTCTCTACCTG-TGGGGCGGGG
s HiC_scaffold_1 177571785 375 + 233722169 GAAGGCCAGTGTCTCACCTTGACCATTAGATTCCATTCGAGAAGCAGTGTTGACTGTGTCTCCAAAAAGACAATAGCGGGGCATCTTCAGGCCAACAACCCCAGCACAAACTGGTCCT---AAGGGACAAAACAGG----------------------------------------------------------------------------TTGGGAGAGCCTGGG---AAGGGTGGAGCCCAGGGCTAGGT---GAGGGTCAGCCTT--------------------ACCAGTGTGCACCCCTATGCGTAGCCTTAGCTGGTCATGGGGCCGGTGGCGGATGCGGAAGGAAGAAACCGCATCTAGTAATGCTAGGGCCATCCGAGCAATTTCTGGTGCGTGGCGTTGACCATTTCGGCCCGGGAGACCAGACACCACCATGTACGCATCCCCAATCGTCTCCACCTGATGGAGAGGGG

a score=13869
s chr3            90455695 621 + 160039680 CTCACCTTGTACACATCAAAGTTGTCTATGACAGCATCAAAACAGGTGTACAGATCATTGAGCAGGGTGACCACCTGGAAGGCAAAGGAAGCCAAGA----GAAAT---------GGTGAATGAGGGCTCCCA--CCAGGGACAAGTGGAGAGTA--------------CTAACCAGGT---------GGCCAAGCT----GA--CCTACCTGGCCTGTTGCCTGTGGCTGAACCCCGG---CTTACCTGCATGGGTGTGCTCTCTGCTGAAAGAGCTGTAAAGCCCACGATATCACTGAAATAGATAGTAACACTATCAAATGCCTCAGCCTGGACTGTCTCGCCTCTCTTCAGCTGCTCAGCCACAGAGCTGA----------------------------------------------GGGGAGAGGGCAGGTAG------------AGACCAAGAGGTG--------------AGATGGGATGGGGAC--AGGGCTATACG----TTtgtgtgtgtgtgt---gtgtgtgtgtgtgtg------------------------------------------tgtgt--------------------------------------------------------gtgtgtgcgcgcgcg--------------cgcg----------------------cgcgcgcgcgtgcAGAGTTT------------------------------------------------------------------AGAACTCACTGAGGCAGAATCTGGTAAAGCAGGGCCTCAGCTTTGCGCTTCTCCTCCAGATAAGCCTGTGTTCTCTCCTCTACCAGTTCCTCCAGGTTGTTGGCGTACTGTTCCATGCGTGACAGCAGGTTGTCCAGGATGTTGCTGCTGTTCTCCCTGAGGG
s HiC_scaffold_1 177573402 944 + 233722169 CTCACCTTGTAGACGTCAAAGTTGTCAATTATGGCATCAAAGCAGGTATACAGGTCATTAAGAAGTGTCACCACCTAACAGGATGGGAAAGCACAGGCCCTGAAATTTGTGCCCAGCTTACTAAGAATTCTCAATCCATGAGCCATAGCAGTGTAAGGGAGCTCAAGAACAAACCAGTCTTCATTATGGGTGAAGCTCCCAGATCCCTATCCCACC-----CCTGACCATGCACCCACAACTCTCACCTGCATGGGGGTGCTCTCAGCTGACAGCGCTGTGAAGCCAACGATGTCGCTGAAGTAGATGGTGACACTGTCAAAGGCCTCAGCCTGTACAGTCTCTCCCCGCTTTAACTGCTCTGCCACAGAGCTAATAAGAGTACAGTGTAAGCCGAGCTCCAAGAAAGATGGTTTAGGCATGGGGTGGGGGAAGGTGGCTGCAGCAAAGTAGCTGAAAAGGTACCTTGAGCAAGGAAAGCTGAGCCAGTGGCGGAGGGTTACAGGAGGATCTGCATGCAGGGGCTAAGTGTCTCAGGCTGGGAATAGTTTACAGACACCGGTTAAAGCAAAGGCAAGGTAGAGCTGTGTCCTGAGGAGGGATGCAAAGCCAGAAAGCTCAGGGCTCATTTGGAGACAGAATGAAAGTGTGTAGTCTCTAGTCAGAAGGGGTCACCGTGGTGAGACAGAATAGATGGGTTCTGAGGGTAGGAAGAGAGTTTTCAGGAAGCTGACAAGGTAGAACCCAACAGAGCCGAATCTCAAAGGGAAATTTAAGGAAGGGTCAAAGGTCTCACTGGGGTAGAATCTGGTAGAGCAGAGCCTCAGCCTTCCGCTTCTCCTCCAGATAGGCCTGTGTGCGTTCCTCCACCAGCTTCTCCAGGTTATTAGCATACTGTTCCATGCGCAGCAGGAGGTTATCCAATATGCTGGTGCCACCCTCCCTGCAGG

a score=6282
s chr3            90457307 172 + 160039680 AAGTGATCCTCACCTTTTGGGCTGAGGTCCAAACCTTCCACATAGAAGACCCCACTTCTTAGGGCAATTTCCTGAAGGATGATACCAAAACTGTAGACATCCCCAGCTTGGGAGCCACGGGCAGGTGGGGAAGCCATTCGCAGGAGCTCAGGTGCAGTCCACAGTTTTTCTG
s HiC_scaffold_1 177574888 172 + 233722169 AACTGACTGTCACCTTTAGGGCTAAGATCCAGGCCCTCTAAGTAGAAAGGACCACTGCGAAGTGCTATCTCCTGTAGGATGATCCCAAAACTGTAGACATCAGCTTTCTGCATTCCTGTGGTTGGCAAGGAGTTCCCATTGAGCAGTTCTGGGGCAGTCCACAGcttctctg

a score=7547
s chr3            90458063 183 + 160039680 AGACTTACTGGCAAAGAGGGTGTGTCCTTGCTCTGGCTCCG-GGTC--TCTGAAGCTCTCGAGCCCATAGTCTGTGATCTTTAACACAAAACGTCCATCTACCACGCAGTTGGATGACTTGAGGTTCCCATGGGAACCAATGGCCCCGTTGTGTAGAAAGAGCATTCCCTGGAATATTTAGGAAGG
s HiC_scaffold_1 177575212 186 + 233722169 AGCCTCACTGGCATAGAGGGCGTGGCTGTCATCAGGTTCAGCAGTTGATCGGAAGCTGGCCAGGCCATAGTCTGTGATTTTGAGCACGAAACGACTATCCACCACACAGTTGGAGGACTTGAGGCTTCCATGAGACGATATAATGCTGTTGTGGAGAAAGGCCATGCCCTGCAGGATACAGATAAG

a score=9988
s chr3            90458313 871 + 160039680 GGACTCACCTTGACAATGTCATTGGTGAGTGAGTACCGAAACATCCAGTCCAGGGTAATACTCTCATTCTCTAGAATGTCCTGCTGGGGCAGCAAGAGTCAGACCCCCCTGGGAGTAGGAGGAGGGTACAAGGGAGCTACTGGCGTAAGCTTGGACACTTGGATTTGCTGTAGTGCCATGCCCGCCCccaactcccatttacagagaggccaagaatggccagaaagaggaagcttatctgggctcatgtgatcaatggggtaagagccagggctggaaccccgggcttctcgacacactccctcttgtcccgctcaCCTGTAGGCTCCCACGGGGACAGTACTCTGTGAGGATACAGATGTTGGGAGGGTCGGTACAAGCTCCCACAAATCTGGTCAAGTGCTCATTCTGCACATCCCGCATCTGCAAGTGGGGGCAGCATCAAGGCCTGGCAGAGGCTTCATACCTCACCAAGTCATGTGTTGATTAACATTCTTTCTCAGCATCTGCTCCCTAACCCCTTGATTTCCTGGCTGTACCTATGAGGACAACCCGTCTGGACCCTGGAGGACCCAGTGATCTCTCATGACTGATCTCCTTTTTC-CTACCCACAAGACTCAAGGGCCCATCCCAGATGTATAGATCCTTCCATAATCAAGTTCTGTTGGCCGACTCTCTTGGGAGTACCCATGGGGCCCTTCCCAAGCCACAGCCTTGTTC----CCCTAAATTACATGTTTAAGTTCAAACAGGACTTTTCGTGTCAACTCAATGCGTTTCCGGTTCACACGTTTCACAGCCACGAGGTTGCCCTGAGCAAGAAATGGAAACTTATTATTCAGGAGATGACCTGA-GACTCCCATCTGCTTCTGAA
s HiC_scaffold_1 177577299 603 + 233722169 GAACTCACCTTAACAAGGTCATTAATGAGAGAATAACGAAACATCCAGTCCAAGTTGATGCTGTCATTTTCTAGAATATCCTGGTAGG-----------------------------------TGACACAGAGGA-----------------GAGCACGTGTATGTCCTA----GCCCTGCCAGTCACCA------CTTGGCAGAG--------------------------------------TCATGTGA---------------------CTGG---CTCAGCCCCTCCCACACACTATCC---------CTCACCTGTAAACTCCCACGGGGACAATACTCAGTGACGATGCAAATGTTGGGAGGGTCTATGCAGGCACCGATGAATCGAGTGAGATGGTTGAACTGAACATCTCTCATCT------------AGCAGAGAAACATGGGA-AGGCCACAGACCAGACGCAGAAATGTACCG--------------------------------------------------TTACAAGTGAGGAC-------CTATGACTTAAA----------ATCCATCCTAAGTAATGCCCTGCCTCGCTAGCCG--------AAGTGTCTGTTCAGG-----------CTTCC-----------CTGTtg-----ctctc---------cccct-----cctccctacCCCACAGCCTCATGCCACACTCTTACATACATGTTTGAGTTCGAACAGAACCTGCCGAGTCAGCTCAATGCGCTTCTTATTCACGTGTTTGATGGCGACCACGTTTCCCTG-Gtgagagcagaag-----------agaaaaaaaccaaatgagtACCATTTGTTTCTGGA

a score=5544
s chr3            90459912 212 + 160039680 AGAGACAGCAGTGTC-----CTCACCCCACTCAGGGTCAGCCGACTGCCAGCGCTCCGAAGGTGCCTCTCCAGGCTGCTGGGCTGCAAGTCCTCCCAGCGCACCCGCCACAACTCTGAGACCAGCTCCTTTTCCAGCTGCATCTTCCTGGAATG--TGAAGCCTGCATCTGAGCCCCGAGCCCTGGTGGGGTGCTCCTCAGCCCTC---AGAGCCCCAGGAC
s HiC_scaffold_1 177578266 221 + 233722169 AGGGACAGCAGAGACGAAGGCTCACCAGTGACAGGGTGAGGCGGCTGCCTGCACCTTTGTGGTAACGCTCTGAGTTGCCAAACTGCAGTTCCTCCCAACGAATGCGCCACAGCATGCTGGCCAGCTCCTTCTCCAGCATCAGCTTTCTGTAAGGACTGCACGCCTCAGCTGACTGGCAAGCCCACGC-CGCCACCCCTCAGCCAACTGTGGAGCCGCAGGAC

a score=11462
s chr3            90464770 698 + 160039680 CCGTCTGGTGGGTGCCAGCCTCACCTCTGCCCTTGCGCTGCACGGTCCGCAGTAGCTTGGTGTAGTGGTCCGGGTCGCC---CTC---GACGAACTCCTGGTGATTTACTGTGATGTTGAGTCGCTCACGCACCCGCATGTACAGCCCCTCCACTATGAAGAAGCACGGCCGGTCGTC-GCCCAGCCGATCTGCATAGAGCACAAGCGCCTGGTGCTCCCAGCCCAGCCGTCGATGCAGCGCCGTCACGAAGTCGCCCAGCTTGACATGGCTGGGTCCTGTGCGGGT---GGTTAACGCGTACTCATCCTTCACCCCGATGCCCAGAGCCGGGGCGCCAGCCGTCAGCAGCGGCACCCGCCAGTGCGCGGTGAAGCGTCCCACCGGGGCAGCAGAGTATACGCAGCCGGGGCCCAGGAACACCGCGGGGCTGTGCTCCCACTTGAGATCCACCGCGGCCAGCGGTGCAGCGGTGTCGGAGCAGACGCCCGCCGCGTTCTCGCTGCTGCCCAGCACCATACGGACC----GTCCAACCCGGCAGCAAGTCCGGCC--GAGCCTTCACCCTCCCGAGAGCCAGTTCCACCGCCGGCCCTACACGCGCCCAAGACCACGGGTA--CGAGGTGTTGGTCAGCGGCAGCACCACGGCCACGGTCAGGT--CGCTCGCGTGG----------CCGCTT--CGGag----------cagcagcagcggcggtagc-------------agcagcagcGCC
s HiC_scaffold_1 177587750 710 + 233722169 CCATCAGTTGGGT-CCACACTCAC---------TGCGCCCGTTGGCCCGAATGAAGTGCGTGGCCTGTTCGGGGCCGCCTGGCTCACGGGCGTACACCTGGTGCTGCACACTGAGGTTGCTGCCCT-GCAGGGCCTCAAAGACA--CCCTCGATGGTGAAGTAGTGAGGCCGGTCATCTGTGCGGGC-ATCCAGATACAGCAAGGCAGCGCGGGAAGTCCAGTTGAAGTGCCCGTGTAATGTCACCACAAACTCACCCAGCTTGGGAGCAGAGGGACCAGTGCGAACCAGGGTACGATAATGTTCATTCTTAGCAGCAAAACCAGAGGCCACTGCACCCGCAGTCAGCAAAGGAAGACGCCAGTGTGAGGCAAAGCGGGCCACAGAGGCAGCGGGGTACACGCAACCCGGGCCCAAAAGAAGGTCAGGGTCATGGTACAGCTTGAGGTCCACAGCGCGCAGCGGTGCCAGGTACTCAGAGCAGGCGCCATCTAGTTCCGAGCTG--------------ACAAACCGCAGGTCCA--CGGGCAGT--GCCCGGCCCAGCGCCTCCAC---------AGCTAGTGCCACAGCAGGACCCACCCGTGGCCAGGCCCAAGCGTAGCTCAGGTTGTGTTCG--GGCAGCACGACTGCCAGAGTCAGGTTCTGCGCCCCTGGAGGATGCACCCCACCTGCCAGGGCTGCCACCACCAGCAACAGTGATGGCAGTGCCATGGGGATAAAGCAGCAGCGCC

a score=19994
s chr3            90468775 783 + 160039680 TGGAGGTAAAGTTCTAGG----GATAAGGCCTGGGGCTGCAGTGGAAAGAACAG-------ATGATCAGTATTCCCTTCTTCCTTCCTCCCTTCCCCTTCAACAGCATTCACACCGCCCTTCCAACATGTCTTC---AGGGTAGCAGTGCCCTCATGGACCTCAGAAGTCCCTCCTTCCTGTATCCCCTCATCCACATGCCAGTGAACAAAGGTACGCTTTGCACACATCAGGTCAAACTTGTGGTCTGGGTGATCCCAGGCCTCAGCAATGACACCAGTGCTGTTCAGCATGCACACAGCTCACTGTGGCTGGTCCGGGTTTCTTCCTCTGGGAGAGGTGTGTG----CCAG------------CCTTGAGGCCATTGGAGTATGAGACTACAAACTACATGCTGTACATGGTCTCA-ATGGTGGCAGACCGAACATTGACATCTTT-AGGAACCACATCACCA-GACCATGTCAAGCATCAAACCTCCGTGTTTACTATGGTG-AGGTGACTTTTTAATCATATGATTGGCTAGCTCAATGTAAGTACTTGTGATCTTTGCAGAAGAACCTGGGTCCTGATAGGCTTTCTCAGCAGAGTAGAC---GGGCATATGT------AGGAAGGTGGAAATGGAAGT-----------------------------------------------CTATCAAATGGAAGGAGGACAGTGATAGAAGATAGAAACTGCCTACGGTGACAATTGAGGTTAATGTAGGTTGGGTGTTCAATATTAGGGTTTCTATGACAGATGTCATAGACGGTCTCATTGTCTACCATGAAAATACAG---TCAGAGGGCCG--CAAGATAGTGACGGTGGAGTTGTAGGGTTC
s HiC_scaffold_1 213463636 848 + 233722169 TGAAGCCAAGGCTCTGAGAGCTGACATGACTCAGGGATG-AATGGAACGCATAACTAGCGCATAACTAGTGTtcccctccttcttcttcc--tctccttcaaCAGAAGCCACGCCAACCTCCTCATAGTCCTTCTCGAGGACATCCGTGTCTTCCTGAGCCTCAGAAACATCCCTTTCCC-CATCCACTCACCCATGTATTAGTGAACAA-------CTTGTTACATATCAGATCAGACTCTTGGTCCAGGCAAGCCCAGGCTTCAGCAATGGCTGTGGTGTTACTCAGCATGCAAACAGCCC--TGTACCTTGGCCAGGTCACCACC---AGGCAACATGATTGGAGGCCAGTAATTAAGGTAACTTTAAAGCCAGTGGGACATCAGTCCACAGACTAGATGCTATGCTTAGTCTCATATGGTGGCAATGGCAGCATTAAGATTTTTTGGGGACCACATCACCGTGATAATGACAGGGAGAAA-------------CCATGGCGGAGGTCACATTTCA-CCATCTGGTTGACTGTTTCAAAGCAGGCATTGGTGATCTCTGCTACAGAAAGCTGTTCACGGTAGGTTTTCTCAGCAGAGAAGACAGAGGCAATACGTGGCCGAAGGGAAGTGGATGTGGGGATAGAGAACCAGTTTGGCCTGGAATTTCATCAGATCAACATTCCTGGCTCCATCAAATCTGAGGGAAGTGGTGATGGGAGACACAATCTGGCTAATAAGGGGGTTCAGGCTAGTGTATGTGAGGCGCGCAATATCTAAGTTTCTACAACAGATGTCATAGATTGCCTCAAGGTCCTCCATAAAGGCACAGAGTGCTCTGGGCTGGTGTGGGTGGTGAGGATGGAGCTATAGTGCTC

a score=26449
s chr3           90468893 817 + 160039680 TCTTCAGGGTAGCAGTGCCCTCATGGACCTCAGAAGTCCCTCCTTCCTGTATCCCCTCATCCACATGCCAGTGAACAAAGGTACGCTTTGCACACATCAGGTCAAACTTGTGGTCTGGGTGATCCCAGGCCTCAGCAATGACACCAGTGCTGTTCAGCATGCACACAGCTCACTGTGGCTGGTCCGGGTTTCTTC---------CTCTGGG-----AGAGGTGTGTGCCAGCCTTGAGGCCATTGGAGTATGAGACTACAAACTACATGCTGTACATGGTCTCAATGGTGGCAGACCGAACATTGACATCTTTAGGAACCACATCACCAGACCATGTCAAGCATCAAACCTCCGTGTTTACTATGGTGAGGTGACTTTTTAATCATATGATTGGCTAGCTCAATGTAAGTACTTGTGATCTTTGCAGAAGAACCTGGGTCCTGATAGGCTTTCTCAGCAGAGTAGAC--GGGCATATGTAGGAAGGTGGAAATGGAAG-----------------------------------------------------TCTATCAAATGGAAGGAGGACAGTGATAGAAGATAGAAACTGCCTACGGTGACAATTGAGGTTAATGTAGGTTGGGTGTTCAATATTAGGGTTTCTATGACAGATGTCATAGACGGTCTCATTGTCTACCATGAAAATACAGTCAGAGGGCCGCAAGATAGTG---------ACGGTGGAGTTGTAGGGTTCAAAGACAGCCGTGAAAACTCGGG--GCTGGCTAAGTGAGGAACTCCAGCT-------------GTAATCAGCATGGAGACGTTTAGCATCA------AGGAGAACCTAGAACC-ATTTTCCTACCAAAGGTATGGAAAAACAGGA---CTTGAGCCCCTG----CTAGTCAGCCCGTAAAT
s HiC_scaffold_1   774544 921 + 233722169 TCTCCAGGGCAGCCATATCCTCCCGGGCCTCTGAGAACTCACCCTCCTCCATGCCCTCTCCTACATACCAGTGTACAAAAGCCCTCTTGGCATACATCAGGTCGAACTTGTGGTCCAGGCGGGCCCAGGCCTCTGCGATGGCGGTTGTGTTGCTTAGCATGCACACGGCACGCTGCACCTTGGCCAGGTCGCCCCCAGGCACCACCGTGGGTGGCTGGTAGTTGATACCAACCTTGAAGCCCGTGGGGCACCAGTCCACAAACTGGATGCTGCGCTTCGTCTTGATGGCCGCGATGGCAGCATTGACATCCTTGGGTACCACATCTCCGCGGTACAGCAGGCAGCAGGCC-ATGTACTTGCCGTGCCGGGGGTCGCACTTCACCATCTGGTTGGCAGGCTCGAAGCAGGCATTGGTGATCTCTGCCACTGACAGCTGCTCGTGGTAGGCCTTCTCGGCAGAGATGACTGGTGCATAGGTGGCCAGCGGGAAATGGATGCGAGGGTAGGGCAccaggttggtctggaactcaGTCAGGTCCACATTGAGGGCCCCATCAAAGCGCAGGGAGGCGGTGATGGAGGACACAATCTGGCTGATGAGGCGGTTGAGGTTGGTGTAGGTGGGGCGCTCGATGTCCAGGTTGCGGCGGCAGATGTCGTAGATGGCTTCATTGTCCACCATGAAGGCACAGTCTGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTGTAGGGCTCgaccacagctgtggacacctgGGGAGCTGGGTAGATGGAGAACTCCAGCTTGGACTTCTTGCCATAGTCAACGGAGAGCCGCTC--CATCAGGAGGGAGGTGAAGCCAGAGCCGGTGCCCCCTCCAAAGCTGTGGAATACCAGGAAGCCCTGAAGTCCTGTGCACTGGTCAGACtgaaagt

a score=4166
s chr3           90511235 157 + 160039680 GAAGAAGTTGTTACAAGCCACTGTGAGAGCAGCCACCAGCACAACATACTCCTTGAAGTCCACTTCCCCATCTCCGTTTTCATCCAGTTCCTTCATTACCTTGTCCACAGCATCTGCATCCTTCTGGACC---TGTAGAAGGGGATGGAAGTGTTTATCA
s HiC_scaffold_1 94433125 160 + 233722169 GAAATAATCATTGCACGCAATGGTGAGGCCTGCAATTAGTGAAAAGAAGCTCTGAAAGCCCACTTTGCCGTCTCGGCACTGGTCCAGGTCCTTCATGATTTTGTCCACAGCCAGAGGGTCTTTCTGATTCTGGTGGTGAAGAACAAAGAAGTATTAGTCA

a score=6570
s chr3            90577566 147 + 160039680 TATACT-TAATCTGTTTCTGCTCTTCAGTGAAAAGCAAGCATTTGACACCA----TCTGAGCTTCTTCAAAAAGGCTGTTCATGAAATATTAAGGATTTGTTTATTGATTACCAAGAAGGCGTTGGTTATCAGAGCCTGGGTCACAATCGCT
s HiC_scaffold_1 227572324 152 + 233722169 TATACTCTTACCTGTTTCTTCTGTTCAGTGGGAGATAAGCACTTGGCTCCAACCTTCTGAGCCTCCTCAAAAAGGCTATCCACAAAATATTCACAATTCCTTTGCTGATTGTCATCAAGTGGTTGATTGTCAGATCCTGCTTCGCAAAccct

a score=10665
s chr3            90651699 221 + 160039680 TGTGTGAATCCTTACAGACCCAGCTCCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCTGGATCTACTG-AGGAATAGGGCGATTTTGTTTTTGTTTCTTGGCCAGGAATCGTTTGATTCAGAAAGTCTTGTGAGAAGACATGGCGAGAAACCGAATCAAGAATAGCGCACACGATGGCGGAGGAATGGAGAAGAG
s HiC_scaffold_1 114546289 218 + 233722169 TGTGCAATTCTTTGCAGACCCAACTT-GGTCTTCTCTAATGCTCCCTCTTAGAATTGTACTTGATTTTATTACCAGTTTTCATTAGAATTTACTGCGGGAATGGGAtgattttgcatttgtttcttgGCCAGGAATCAGCTGACCCTGAAAGTGTGGTGAGAAGGCAGGGCGGGCGACTGAGCC---AACCGCACTGGCGACGGTGGATAAATGGACAGCAG

a score=10815
s chr3            90651699 207 + 160039680 TGTGTGAATCCTTACAGACCCAGCTCCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCTGGATCTACTGAGGAATAGGGCGATTTTGTTTTTGTTTCTTGGCCAGGAATCGTTTGATTCAGAAAGTCTTGTGAGAAGACATGGCGAGAAACCGAATCAAGAATAGCGCACACGATGGCGGA
s HiC_scaffold_1 185142895 199 + 233722169 TGTACAACTCCTCACACTCACTGCTCGGTCCTCCTCCAGTGTCTCCTCTCGGAGTTGTACCAGACTCTATTACCAGTCTTCATCCGAATCCACTGAGGAAt-----ggttttgcttttgcttcttggCCAGGAATCATTTGATTTTGAAAATCTTGTGAGAAGACATAGTTAGCCTCAGAG--GGGAACA-CACACTCGATGGTGGA

a score=6691
s chr3           90684423 285 + 160039680 AATGATGTCT-AGTCAATGGCAGATAGCATATAGGACAGTGGTCCCATAAGATTATGATGGAGCT---AAATATTCATTGTTTAGTGACG-AGTAATGTGCATAAGGT------ACAAGGTCTCATTTGTATGCTTCTGGTGACACTGGTATAAAAAGAATCACCACAATGTCAGTCATGTAGAAGACAAAACAGTCACCTATATACTGTACATAATGCTTGGTAATTTTAACAAATGACCATGTTACTGGTTTATGCAT-TTA----------TTGTTGCTCACTAGTTTAAAGTGt----------cttacacgc
s HiC_scaffold_1  1353710 310 + 233722169 AATGAGGTTTTGGTCAGCAAGGGCCCACATAGACAACA-TGGTCCCATGGGGTTACAATGGACCTGGGAAACTCTTATCACCTGGTGACACGGTAGCCATTGTAACACCATTCAATAAGGCATTATTCGTGTGTTTGTGGTGGTACTGGTATAAGGAAACCTACTACACTGCTGGTCATATAAAATACAGCATGTATAATTACATAGAGTACATAATGCTTGGTAATGGTAATACA--AATACATTACTagtttatatatattacataatagtTTTGTTG----CTATTTTAGAGTATAATCTTTTCACTTACATGC

a score=3971
s chr3            90684580 94 + 160039680 ATGTCAGTCATGTAGAAGACAAAACAGTCACCTATATACTGTACATAATGCTTGGTAATTTTAACAAATGACCATGTTACTGGTTTATGCATTT
s HiC_scaffold_1 133079079 94 + 233722169 ATGTCTGTTATATAAAAGTATAGTAATAGAATTATGAATAATGCATAATCCTTGATAATGATAACAAACCACCATGTTACTGGTTTATGCATTT

a score=34214
s chr3           90708817 809 + 160039680 ttttacatttaatttt---tttaGCCTTAATTAATTTACTTTATTTTTGTTGTATATGCTCCTGTATGTGGTAGCCACAGTTGGAGACTGGGTTCTTTTAAGGGAGTCTCTGTGGTGGATTTTCACAAGATGGTCAATGAATTCCCGATAAGGAGACTTGGTGAACACAGCCTCTGTGCAGAGGTTGGGGGTGGGGGTAGGGTTAAGTTGCTGTAGGTCTTGGAAGATGGCACTGAAGATGGCTTTGGCAAAGTTGCCTAGGGTGGTAGTGAAGCCCCTGGATGATGTGGAACAGTCATCAATACTGGTGTTCAGCAGCAACTTCTTGGGCACAGGAGTAGAGATGATGCCAGTGCCTCTTAGGGAAAGGATGAGATGTGCCATCACAAGCCACAGCTACCGGTCACCTCGAATGGAACAGTGTAGTGTTCGTCAACCCTATTCCCTCAGTAACTTCTCTGCCCTGGGATGATGG---------CCAAGATGATGGTCCCTCTGATGGCAATGGCTACTTCTTTGGAGGATTTAGCACCAAGACCAAAGTGACCATTGTAGTCTCCAGTTGCAGTCAGAGCCTTGAATCTGGTTGATTGGTCAGCCTGAGTCTGCTCCCACACCAACACGATCTTTAGAACTTCAGCCTTTAGGGATGTGCCCAGGAAAAAGTCAATAATCTCAGATTCCCTGATGGTCAGGAAGAAC--AGGTGGATCACCTCCCAGGGTCTTGATCTTCATGTCCTTAACCAGGCAGCTCAG-TTGGTGATGGAAATCCATTCCTTGCCTTTGGCTTTACCTCCATGAGCCCTGTGTTCTCA
s HiC_scaffold_1  1549969 762 + 233722169 ttccacattttattttattttcgaatttcattcattt---ttattttccttgtgtaAAAACCCTTATGTTGTAGCTACTGTTGGAGCTTGAATCCTTTGGATGGAGACTCTAGTGTGAGTTTTTTCAAGATGGTGGGTGAATTCTTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCCAGAGGTCAGGGGT-----------CAGGTAGCTGTAGGTCTTGGA-GATGGCGTCAAAGGTGGCCTTAGCAAAGTTGCCCAGAGTAGCAGTACAGCCTCTGGCC-AGGTGTAGCAGTCATCAGTACCAGCCATCAGCAGCAGCTTCTTGG-CACAGG-GCTGAGACAATGCCAGTGCCTCCCGGGGCAGGGATCAGACGCACT--------------------GTCACCTTGCAAGGGACTATGTGGGGTTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCGCACAGGAGCAATGGAAACCTTGGCCAGGATGATGGCCCCGCGAATGGCAGTGGCTAC------------------ACCCAGACCAATGTGACCGTTGTGGTCCCCAGTGGCGACAAATGCCTTGCACCTGGCCCACTGACCAGCACGAGTTTGCTTATGTACAGGCATGATCTTTAAGACTTCATCCTTTAGGGATGCGCCCAGG-AAAAGTCAATAATCTCAGACTCTTTGATGGCTAAGGAGTCCCTGGATGG-----CTTCCAGGGACTTGATCTTCATGCCCTTGACTAGCCAGCTCAGCTTGGTGACAGGAATCTACTCCGTGTCCTTGGCCTTACCGCCACGAGCTCCGTGGCCTCA

a score=32561
s chr3           90708824 803 + 160039680 tttaatttttttaGCCTTAATTAATTTACTTTATTTTTGTTGTATATGCTCCTGTATGTGGTAGCCACAGTTGGAGACTGGGTTCTTTTAAGGGAGTCTCTGTGGTGGATTTTCACAAGATGGTCAATGAATTCCCGATAAGGAGACTTGGTGAACACAGCCTCTGTGCAGAGGTTGGGGGTGGGGGTAGGGTTAAGTTGCTGTAGGTCTTGGAAGATGGCACTGAAGATGGCTTTGGCAAAGTTGCCTAGGGTGGTAGTGAAGCCCCTGGATGATGTGGAACAGTCATCAATACTGGTGTTCAGCAGCAACTTCTTGGGCACAGGAGTAGAGATGATGCCAGTGCCTCTTAGGGAAAGGATGAGATGTGCCATCACAAGCCACAGCTACCGGTCACCTCGAATGGAACAGTGTAGTGTTCGTCAACCCTATTCCCTCAGTAACTTCTCTGCCCTGGGATGATGG---------CCAAGATGATGGTCCCTCTGATGGCAATGGCTACTTCTTTGGAGGATTTAGCACCAAGACCAAAGTGACCATTGTAGTCTCCAGTTGCAGTCAGAGCCTTGAATCTGGTTGATTGGTCAGCCTGAGTCTGCTCCCACACCAACACGATCTTTAGAACTTCAGCCTTTAGGGATGTGCCCAGGAAAAAGTCAATAATCTCAGATTCCCTGATGGTCAGGAAGAACAGGTGGATCACCTCCCAGGGTCTTGATCTTCATGTCCTTAACCAGGCAGCTCAG-TTGGTGATGGAAATCCATTCCTTGCCTTTGGCTTTACCTCCATGAGCCCTGTGTTCTCAA
s HiC_scaffold_1 23605980 801 + 233722169 tttttttttttttttcagatttcattcattttatttttcttgtgtaaaAACCCTTATGTTGTACCTACCGCTGGAGCTTGAGTCCTTTGATCAGAGACT--AGTGTGGGTTTTCACAAGACAGTCAGTGAATTCCTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCTAGAGGTCAGGAGTCATG-------TAGGTAACTGTAGGTCTTAGA-GATGGCATCAAAGGTG-CCTTAGCAAAATTGCCCAAAGTAGCAGTACAGTCCCAGGCAAAGGTGTAGCAGTCATCAATACCAGCTATGAGCAGCATCACTTTGGGCATAAGGCCTGAGACAACCCCAGTGCCTTTGGGTTCGGGGATCAGACACACCACACAGAGTCACAGCGGCCTGGCAGCTGGCAAGGGACTGTGTGGGGCTTGTCAATCTTGTTTCCCCAGTGGCCTCTCCTCTCAGGAGCAATGGAGAGTTTGTCCAGGATGATGGCCCCCCGAATGGCAGTGGCTACCTCCTTAGAACACTTTAAATCCAGAGCCACGTGACTTTTGTATTCCCCAGGGACGACAAATGCCTTGAGTCTGGTCCCCTGGCCAGCACGAGTTTGGTTCTGCACAGGCATGATCTTCAGGACTTCATCTTTGAGGGATGCACCCAGGAAAACGTCAATAGTGTCAGACTCCTTGATGAGTAGGGAGAAGAGAAAACTTTCCT-CCAGGGACTTGATCTTCATGTCCTTGACCAGTCAGTGCAGCTTGATGACAGAAATCCACTCCTTGTCCTCGGCCTTACCACCACAAGCTCCACGGCCTCGA

a score=25289
s chr3            90708829 799 + 160039680 tttttttaGCCTTAATTAATTTACTTTA-TTTTTGTTGTATATGCTCCTGTATGTGGTAGCCACAGTTGGAGACTGGGTTCTTTTAAGGGAGTCTCTGTGGTGGATTTTCACAAGATGGTCAATGAATTCCCGATAAGGAGACTTGGTGAACACAGCCTCTGTGCAGAGGTTGGGGGTGGGGGTAGGGTTAAGTTGCTGTAGGTCTTGGAAGATGGCACTGAAGATGGCTTTGGCAAAGTTGCCTAGGGTGGTAGTGAAGCCCCTGGATGATGTGGAACAGTCATCAATACTGGTGTTCAGCAGCAACTTCTTGGGCACAGGA-GTAGAGATGATGCCAGTGCCTCTTAGGGAAAGGATGAGATGTGCCATCAC-AAGCCACAGCTACCGGTCACCTCGAATGGAACAGTGTAGTGTTCGTCAACCCTATTCCCTCAGTAACTTCTCTGCCCTGGGATGA---------TGGCCAAGATGATGGTCCCTCTGATGGCAATGGCTACTTCTTTGGAGGATTTAGCACCAAGACCAAAGTGACCATTGTAGTCTCCAGTTGCAGTCAGAGCCTTGAATCTGGTTGATTGGTCAGCCTGAGTCTGCTCCCACACCAACACGATCTTTAGAACTTCAGCCTTTAGGGATGTGCCCAGGAAAAAGTCAATAATCTC-AGATTCCCTGATGGTCAGGAAGAACAGGTGGATCACCTCCCAGGGTCTTGATCTTCATGTCCTT----AACCAGGCAGCTCAG-TTGGTGATGGAAATCCATTCCTTGCCTTTGGCTTTA-CCTCCATGAGCCCTGTGTTCTCAAG
s HiC_scaffold_1 178178358 744 + 233722169 tttttttttttttaacagatttcGTTCACTTTTTCTTGTGTAAAAACCC-TATGTTGGAGATACTGTTggagcttg---tttttt--------------------tttttacaagatgGTCAGTGAATTCCTGGTAAGGAGACTTGGTGAACATAGTCTCTTTCCAGAGGTCAGGGAT-----------CAGGTAACTGTAGGTCTTGGA-GATGGCACCCAAGGTGGCCTTGGTGAAGTTGCCCAAAGTGGCAGTGCAGCCcctg-----------ccag-----------------cagcagcagcttcctGGGCACAGGGCACAAGCACAATGCCTGTGC-TCCTGGGGGCAGGATCAGCCACATCAACACTGAGCCACAGCAGCCTGTCACCTTGCAAGGGACAATGTGGGCTTTGTC----TTGTTCCCACATTAGCCTTTCTTCACAGGAACAACTGAGAGCTTGGCCAGGATGATGACCCCTCAGGTGATAGTGGCTATCTCCTAGGAGCACTTTTCAACCAGATAAACTTGACCATTGTAGTTCCCAATAGTGACAAATGCCTTGAACCTCATCTGTAGGTCAGCACCAGTTTGCTTCTGCAAGGGCATGATTTTTAGAACTTCA-CTGTTAGAAACGTACCCAGGAAAAAGTCAGTCATCTCAAGACCCCCTGATGGATAGGGAGAAGACAGAAATTTCCTCCAGAGA----GGTGATCATGTCCTTGGCCAGCCAGCCAGCTCAGCTCAGGAACAGGGATTCACTCCTTGTCCTCACCCCTAGCCATCATGCCCCTGAAGTCTCCAAG

a score=7525
s chr3            90722607 203 + 160039680 GAGTTTCTTTTTCTCTGAAGTCTTTCAAATCTGGAAGGAACACATGAGTGTTCCATCCACACTCATCATGGCACCTGCATTGTCAAACTCACCACAGTAGTTGGGTGCAGAAAACAGAGCGACTAACTGCGTCTTTGCAAAAAAACTCATACCTATCTTCAACCACTTG-----ATAGGCTCTACATATAAGAGCCAAATCATGCTTA
s HiC_scaffold_1 223256129 204 + 233722169 GAGTTTTAGTTTGTATAAGTTTATT---ACCTGAAATGAACACATCAAAGTTTCATCCACACTCATCATGCCACCAGCATTGTCAAATTCGCCACAGTAATTTGGGGCTGAAAATAGGGTTACCAATTGTCGTTTAGC-GAAAAATTCATAACCATCTTCCACTACCTgcagaaagaaatgttaaaagtaaaaaacagataATTCTCA

a score=6173
s chr3            90722771 156 + 160039680 ACTTGATAGGCTCTACATATAAGAGCCAAATCATGCTTATTGAGAAATTTTGCAACCAGTTCTGCACCAAATGTGAAGGACACTCCTCTGTCATTTTCATCTCAGTCGAAGATATCTTTATTAGGGTCAGGCCACAAAAGATAACAAAGAAGACCT
s HiC_scaffold_1 223259468 156 + 233722169 ACCTGATGAGCTCGACAAATCAAGTCTAAATCATGACGATTCAGAAATTTACTGACTACATCAGCTCCAAAAGTGAAGGAAACACCACGATCATTTTCTCCCCAACCTTGCACATCCTTATCTGGGTCAGACCACAGCAAATCACAGAGCAAACCT

a score=4761
s chr3            90722924 75 + 160039680 CCTTGATCTGGTACATCAGTTGGTCTCATAATTTGCCAAATCTGCTCCATAGATTGAAGATCTGGTGATAATCCT
s HiC_scaffold_1 223263609 75 + 233722169 CCTGTATCAGGGACATCAGTGGGTCTCATGATTCTTCGAATTTGCTCCATAGATTGCAGATCTGGTGACAGTCCT

a score=5505
s chr3            90722996 103 + 160039680 CCTCCCTGACAGCAGAATATCTTCTTGTCCACTATGGTTGTTATTGGTAAGCAGTTAAAACAGTCTGTAAACATTTTCCACAGCTTAATGT---ATCTTCTTTTAC
s HiC_scaffold_1 223264846 106 + 233722169 cctcCATGACAACAGAAGATCTTCTCATCCACAATGGCAGCTATAGGCAGACAGTTAAAGCAATCAGTGAAGGTCTTCCACAATTTAATATTAAATCTTCGTTTAC

a score=10705
s chr3            90723040 287 + 160039680 TGGTAAGCAGTTAAAACAGTCTGTAAACATTTTCCACAG---------CTTAATGTATCTTCTTTTACATTCATCATAAAATCCATAGGTTCTATTGATGCTGTGACACTCATGGTTCCCTCTGAGAAGAAAGAAGTTCTCCAGACACTTGA-TTTGTAGGCCAGCAAGAGGCAGATCATCTCCAGTGACTG-TTTTCTCCATCCACATAGTCTCCGAGAAACAAATACTTGCTCTCTGGAGGGAAGGCACCGAATTCAAACAG--ACAGCAAATCATAGTACTGCTGGTAGATGTTACC
s HiC_scaffold_1 223267566 300 + 233722169 TGGAAAGGAATTAGAgaattatacaattttttttcatcaactacttttctaagttttttttcaCTTACATTCATCATAGAATCCATAAATGCGATTGATGCTAGCACATTCATGGTTTCCTCTTAAGAGAAAGAAGTTCTCCGGATATTTGATTTTATAGGCCAATAGCAAACAAATGGTTTCCAAAGACTGCTTTCCTCTGTCCACATAATCTCCTAAGAAAAGGTAGTTGGCTTCTGGTGGGAAACCTCCATATTCAAATAATCTCAGCAAATCTGTATATTGTCCATGAATATCTCC

a score=4683
s chr3            90723323 132 + 160039680 TACCACGTATTTTGAGTGGTGCTTCAAGTACTGAAAGGATAGGCTGACTGAGGAAGATCTCCGGAGATTTCAGGCAGAGGTTTTGGATTGTGTTCTCCTGGAGCTGGACATTCTTGCCTGGCTTGGACCCTC
s HiC_scaffold_1 223269694 132 + 233722169 TACCACAAATTTTCAGTGGTGCCTCCAATTCCAAAAGAATAGGTTGGCTGAGAAAGATCTCACGAGACTTGATACATAAACCTCGAACTTCTGCTTCCGTCATCTGCACAATTTTTCCTGGACGACATCCTC

a score=4064
s chr3           90888564 141 + 160039680 AATCAGTCCTTACCTTGAAAGAGTTTGGCATCTCCTTATTCACAAGCTCTTTGAATTCCTTCTTGCTCAGGGTGTCAGGATTTCCCTCCGTTAGAGAGTACTTGTGGAAGATCTGGATGATGACGTCCATGGATTCTTCCA
s HiC_scaffold_1 96226688 141 + 233722169 AACCCTTCCTCACCTTTGTGTACTGAGGACACTCATTAGTTAGCAGTTTCTTCAGGTCATCCTTGTAGAGGGCATGGGGATTCCCTTTTATCAGGGAGTACTTGTGGTAGATATCAATAATAGTGTCGAGGGCTTTCTCCA

a score=12783
s chr3           91039572 302 + 160039680 tgCATCTACTTTGTCCTCATTCTGCATGACCAAGAGGTGAAGGTCATGAAAGATGAAATCAATGCCCTCATTAAAGATGCTGATTTCAATGTTGAATCTTTCTGGCCTGGTTTGTTTCCAAAGGCCCTGGCCAATATCAAGATTGAGAGGTTCATCTGTCACTTAGGGGCTGGTGCACCTGGTTCAGCAGCTGGAGCCATGCCTGCTGGTAGTCCTGACTCATCCACCACTAATGTTCCAGTTGAGGAAAGGAAAGTAGAAGCAAAGAATGAAGAACCTAAGGAATCAGTTGATGACATAGG
s HiC_scaffold_1 20830071 278 + 233722169 TGCATCTACTCCGCCCTTATCCTGCA--------AAGTGACCATCATGGAAGATAAGATCGATGCCCTCATTCAAGCAGCTGGTGTCAAAGTCAAACTTTTTTGGCCTGGCTTGTTTGCAAAGGCCCTGGCCAGTGTCAACTTTGGGAGCCTCGTCTGCAGTGTAGGGGCTGAGGGCCCTGCTCCCACAGCTGGTGCTGCACCTGCAGGAGGCCCTG-CCCCTCCACCACTGCTGCTGCAGCTGAGGAGAAGACGGT---------------AGAATCTGAGGAGTCTGATGACGACGTGGG

a score=44876
s chr3           92130924 898 + 160039680 CCCTTGCCATGATAAACATTCCATCCCCTGCTGTTCTG--ATAA-----------TGTGAAGTCAGATGAGGGTTCCCAGGGA--ATGTGGCACCTGCGGAAACCATGTCTAGAGTCATTTCTATGTATCTTGGCAGAGCCCGCTGATGGCTGCAGGTGTGTAGCCTACTGACAGCTTTGGTTAACCCGCTGCACATCACCCAG--------TCATTTACCCAACTTACTCTAGAAATGTCCACAGCCAAGGAAGGCTCCTGAGCCAGTCAGGCA---GAGTTCAAGTGATATCTTGGGACAGTGACCATGGTCTGCATTGCTTGGGGAAGGATGGGGTACAAGACACCAGATCATTTTTATACAGGATGTAGAGTACTGATGCGGTTGATCTTTTCCTTCAAGAACATTCTTTTCTATAGAAAAATGATTCCCTGTGATCTTCTGGAAGCTCCAAAGCTG----------AAACCCTTCAGCTTTGCAACTAAAAATATTACAATTTAATAATCAATTAAACCAACCAACAATAAGCACTACACATCTGCCACCAACAA---TGTTGTTTGCATTTACCTTACCAATATTAATCCCAGCGTGGTAATTCTGTGTGACCCCA-ATAACATTTTGTAACATTGTGCTGCCTTAGAGTTTGTACTGTGAGTTCTATCAGTATTTATGTTGAAATTTCTAACATGGATTCTAGTCTCTATTCTGTTGATTTAATTTTAAA-TGCTTTATCCATTTGTGCAAAGGTAAACACAGATTGTATCTTTTTTAATGGTACGGCATAAAAAAATAACCCTAAAGTGAAGTGGCTCTATACTGTTTTATAGAGTACTTTAACGTGTATAGATATCTTGTAAACTTGTATTGTGGATGTGTAAATAATATGTACTTTGGGT-----------------AAAGTCAAAATAAAATATCCAAGTCATTA
s HiC_scaffold_1 41184553 926 + 233722169 CCTTTGCCATGATACCCGTTCCA-CGCCTGCTTTCCTGgaataaaacagtgaaattgTGAAGTTAGATGAGATTTCTAGGGGGGGAGATTCCACCTGCAGAAACCATAG--AGAGTCACTGATACAAGGTGTGGCAGAAGCCGCTTACAGC---------GCTGCCCA-TGCCAATTTCAGTTGCTATGCTGCACA-CACACAGGCTGCCCATTATTTATTGAACCTATTCTAGAAAGTACCATGGCAGAGAAAGACTCCTGATCTAGCCAGACATTTGAGTTCGGGTCATTTCT-GGGATAACGCTGACGCTCTATATTGCTTGGGAGAGGAGGAGATTTGGAAGACCAGGTCCCTTTTATACAGAACATAGAATCCTGATCGCGTTCTGCTTTTCCTTTAAGAACATTGTTTGAT-CAAGAACCTGATTTCCTGTGATCTC--AAAAGCT---AAACTGTCTGTCCTCGAAACACTTCAGCTTTGCAACTAAAA-TATTACcgattaataataaattaaaccAACCCACGATAAACACTACA-GTCCACCACCGACAAACATGT-GTTTGAATTTACCTTACCAATATTAATCCCAGCGTGGTAACTCTGTGTGACCCCAGATAACATTTTGTAACATCGTGTGGCCTTGTAGTTCGT-----GAGTTCTATCAGTATTTATGTTGAGATTTCTAACATTGAATCTAGTCTCTATcctgttaatttaattttaaaatgctttatccATTTGTGCAAAGGTAAACACAGATTGTATCTTTTTTAATGGTACGGCATAAAAAG-TAACCCTAAAGTGAAGTGGCTCTATACTGTTTTATAGAGTACTTTAACATGTATAGATATCTTGTAAACTTGTATTGTGGATGTGTAAATAATATGTACTTTGGGTTTTTAACACCGCATgtaaagttcaaaataaaatataccaatCATTA

a score=3430
s chr3            92149171 70 + 160039680 TAGAGATTAAACCTTGGGCTTCACACAGGGTAGGTCAGTGTTCTACTGCTGAGTTGTACTCCCAGCTCTC
s HiC_scaffold_1 225839321 70 + 233722169 TGGAGATTCAATTCAGGGCCTCTTGCATGCGAGGTCAGTGCTCTACCGCTGAGTTACACCGCCAGCCCCC

a score=7790
s chr3           92195265 280 + 160039680 CTAAAGGAGGAGAATGAGAAAGTATACAAATGAAT----ATACTATTGAGAGGAAAAAAAAAC---CCTGGAAACTACAGGGTTGATGTCCTAATTGTTCTGTTAGCAAGACTATCTCTTTTGAACAGTGTAGCTTGTAGTGTGCTTATTTTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACC
s HiC_scaffold_1 95912276 274 + 233722169 CTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAGTCTTAAGGAGGAGTAGCAATGTGCCTtggtattgcatgttt----ttct--tctttttagtacATGAATTCCTTCTTCTGAACA-------TTGCTGTATAATT-CCTTTCAGATTCT--GAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=7906
s chr3           92195374 198 + 160039680 TCTTTTGAACAGTGTAGCTTGTAGTGTGCTTATTTTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACC
s HiC_scaffold_1 95925861 191 + 233722169 TCTTCTGAACA-------TTGCCATATAATT-CCTTTCAGATTCT--GAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACC

a score=7845
s chr3           92195374 198 + 160039680 TCTTTTGAACAGTGTAGCTTGTAGTGTGCTTATTTTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACC
s HiC_scaffold_1 95892074 191 + 233722169 TCTTCTGAACATTGC--CTTGTAATTC------CTTTCAGATTCT--GAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=8150
s chr3           92195374 198 + 160039680 TCTTTTGAACAGTGTAGCTTGTAGTGTGCTTATTTTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACC
s HiC_scaffold_1 95931391 191 + 233722169 TCTTCTGAACA-------TTGCTGTATAATT-CCTTTCAGATTCT--GAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=8663
s chr3           92195408 190 + 160039680 TTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCAC
s HiC_scaffold_1 95833865 190 + 233722169 TTTCAGATCCT--GAGATACAAGAAA-ATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=7941
s chr3           92195408 164 + 160039680 TTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACC
s HiC_scaffold_1 95905651 165 + 233722169 TTTCAGATTCT--GAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=8831
s chr3           92195408 191 + 160039680 TTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACC
s HiC_scaffold_1 95898920 192 + 233722169 TTTCAGATTCT--GAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4299
s chr3           92195463 190 + 160039680 AGCCTTGCCATCTACCTCCTGTGCAGATGACTAGGTGCCCAGA-----GCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCT-TG--CCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACC
s HiC_scaffold_1 95925868 184 + 233722169 AACATTGCCATATAATTCCTTT-CAGATT-CTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCC------------TCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACC

a score=4168
s chr3           92195463 190 + 160039680 AGCCTTGCCATCTACCTCCTGTGCAGATGACTAGGTGCCCAGA-----GCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCT-TG--CCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACC
s HiC_scaffold_1 95931398 184 + 233722169 AACATTGCTGTATAATTCCTTT-CAGATT-CTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACC------------TCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4508
s chr3           92195463 216 + 160039680 AGCCTTGCCATCTACCTCCTGTGCAGATGACTAGGTGCCCAGA---GCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCT-TG--CCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCAC
s HiC_scaffold_1 95833847 208 + 233722169 AACATTGCCATATACTACTTT--CAGATCCTGAGATACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACC------------TCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=4386
s chr3           92195467 186 + 160039680 TTGCCATCTACCTCCTGTGCAGATGACTAGGTGCCCAGA-----GCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCT-TG--CCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACC
s HiC_scaffold_1 95905636 180 + 233722169 TTGCCATATAATTCCTTT-CAGATT-CTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCC------------TCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=5296
s chr3           92195467 213 + 160039680 TTGCCATCTACCTCCTGTGCAGATGACTAGGTGCCCAGA-----GCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCT-TG--CCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACC
s HiC_scaffold_1 95898905 207 + 233722169 TTGCCATATAATTCCTTT-CAGATT-CTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCC------------TCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=3842
s chr3           92195522 103 + 160039680 AGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCAC
s HiC_scaffold_1 95833952 103 + 233722169 AAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=4324
s chr3           92195522 104 + 160039680 AGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACC
s HiC_scaffold_1 95899008 104 + 233722169 AAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4287
s chr3           92195553 100 + 160039680 GCACAGATCCTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACC
s HiC_scaffold_1 95899012 100 + 233722169 GCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=3873
s chr3           92195558 94 + 160039680 GATCCTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCAC
s HiC_scaffold_1 95833961 94 + 233722169 GAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=4103
s chr3           92195562 118 + 160039680 CTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCACT------------------GAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACC
s HiC_scaffold_1 95931446 136 + 233722169 CTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4205
s chr3           92195562 145 + 160039680 CTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCAC-TGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACC
s HiC_scaffold_1 95905680 136 + 233722169 CTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCC----------AAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=5189
s chr3           92195562 172 + 160039680 CTTGCCTACCACTGAGGTGCCCAGAGCCCTCCCCACCAC-TGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACC
s HiC_scaffold_1 95898949 163 + 233722169 CTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCC----------AAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4311
s chr3           92195600 80 + 160039680 CTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACC
s HiC_scaffold_1 95925972 80 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACC

a score=4302
s chr3           92195600 80 + 160039680 CTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACC
s HiC_scaffold_1 95905736 80 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4302
s chr3           92195600 80 + 160039680 CTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACC
s HiC_scaffold_1 95892185 80 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4448
s chr3           92195600 106 + 160039680 CTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCAC
s HiC_scaffold_1 95833949 106 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=5183
s chr3           92195600 107 + 160039680 CTGAGGTGCCCAGAACCCTCCCCACCACTGAGATTCTCAGAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACC
s HiC_scaffold_1 95899005 107 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4151
s chr3           92195627 192 + 160039680 CTGAGATTCTCAGAGCCATGCCC-----ACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGA-GGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACC------ACTGAGGTGCCC-----AGAGCCCTGCCCTACCTTG
s HiC_scaffold_1 95925896 198 + 233722169 CTGAGACTC-CAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCA----------AAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTG

a score=4404
s chr3           92195627 192 + 160039680 CTGAGATTCTCAGAGCCATGCCC-----ACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGA-GGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACC------ACTGAGGTGCCC-----AGAGCCCTGCCCTACCTTG
s HiC_scaffold_1 95931426 198 + 233722169 CTGAGACTC-CAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCA----------AAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTG

a score=4415
s chr3           92195627 192 + 160039680 CTGAGATTCTCAGAGCCATGCCC-----ACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGA-GGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACC------ACTGAGGTGCCC-----AGAGCCCTGCCCTACCTTG
s HiC_scaffold_1 95905660 198 + 233722169 CTGAGACTC-CAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCA----------AAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTG

a score=4974
s chr3           92195627 185 + 160039680 CTGAGATTCTCAGAGCCATGCCC-----ACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGA-GGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAGCCCTGCCC
s HiC_scaffold_1 95898929 180 + 233722169 CTGAGACTC-CAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCA----------AAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCC

a score=4720
s chr3           92195639 134 + 160039680 GAGCCATGCCCACCACTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCAC-----------CACTGTGGTGCCCAGAGTCCT---CCCCACC-ACTGAGGTGCCC
s HiC_scaffold_1 95833961 149 + 233722169 GAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCC

a score=3925
s chr3           92195654 80 + 160039680 CTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACC
s HiC_scaffold_1 95925972 80 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACC

a score=3925
s chr3           92195654 80 + 160039680 CTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACC
s HiC_scaffold_1 95931502 80 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4058
s chr3           92195654 80 + 160039680 CTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACC
s HiC_scaffold_1 95905736 80 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4374
s chr3           92195654 106 + 160039680 CTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCAC
s HiC_scaffold_1 95833949 106 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=4603
s chr3           92195654 107 + 160039680 CTGAGGTGCCCAGAGCCCGGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACC
s HiC_scaffold_1 95899005 107 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACC

a score=4446
s chr3           92195684 141 + 160039680 AGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCT------CCCCACCACTGAGGTGCCCAGAG-------CCCTGCCCTACC--TTGAAGTGC
s HiC_scaffold_1 95833952 156 + 233722169 AAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGC

a score=4773
s chr3           92195684 135 + 160039680 AGGTGTTCAAAGCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACC------ACTGAGGTGCCC-----AGAGCCCTGCCCTACCTTG
s HiC_scaffold_1 95899008 146 + 233722169 AAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTG

a score=3966
s chr3           92195695 117 + 160039680 GCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCAC----TGTGGT--------------GCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAGCCCTGCCC
s HiC_scaffold_1 95905678 135 + 233722169 GTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCC

a score=4239
s chr3           92195695 183 + 160039680 GCCCTGCCCACCATTGAGGTGCCCAGAGCCCTGCCCACCAC----TGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAGCCCTGCCCTACCTTGAAGTGCACAGAGAACTGCAGTCCACTGAGGTGCCCAGAGTCCTGCTCTCCAACCCAATA
s HiC_scaffold_1 95898947 174 + 233722169 GTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGT-------------CATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACA

a score=4490
s chr3           92195711 101 + 160039680 AGGTGCCCAGAGCCCTGCCCACCACTGTGGTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAGCCCTGCCC
s HiC_scaffold_1 95833952 101 + 233722169 AAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCC

a score=3890
s chr3           92195740 91 + 160039680 GTGCCCAGAGTCCTCCCCACCACTGAGGTGCCCAGAGCCCTCCCCACCACTGAGGTGCCCAGAGCCCTGCCCTACCTTGAAGTGCACAGAG
s HiC_scaffold_1 95899010 91 + 233722169 GTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAG

a score=4054
s chr3           92196678 184 + 160039680 TGTTTACAACCTCA--GTATCAAGAGCTCTGTTCTCTGCAAAGATACCCAGAACCCTACATTGCACTGCAGTGTCCTGAGCCCTGTTCACCACTGCAGTATCCTGAGCTTTGTCTACCACTGCATTGCCAGCAACATCAGTTTTCAGAGCACTGTCCTTCACCACAGTGTCTTGAGACCTGCCAGC
s HiC_scaffold_1 95898994 165 + 233722169 TGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACA---ACAGCAATGTC---CTCCTGTGCA---TCCTGCCCCAC------------CCTGCCAGC

a score=9040
s chr3           92214402 1018 + 160039680 AGAGGGGTCGACATGTTAAAGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGT------GATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC-----TTTATTCTCTATTATTTATATGTGATG------GTTTCT------TGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCAT-------TGATTGAATG-------ATAATTGAAGGGAAGCAAA---------------------------------------------GAAAAAAAGG------CACTGAGGAGACTGGATGCCACTCTACCACCACAATCTGTCCAGGG---AAAGTAGCAT-CATTCTTAGAGGGAATATGATTGATTCTAAAAGGCAAA-AAATGTAGGTCAAATGTGACATTATC--CAAAGAAGAGAAAGATGAAGGGGGAAACTCTATGC-TGAGTAG-GGTCACAGGTAGCCCAATGATGTTAGCAC------------ACAGGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAA-ATAGAAGACC---------CTGACTC-CATGGCTTACT-GAGGGCGCACTTG------------GTATCTTTTG----CTTCTCTTCTTTCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTACACTCTAGCAACGAACTAAGG--ATGAACTAAAGAGGGACAAATAACCTTGAA----TTTAAGACAAATAGAGGGTCTCATGAAA----AAAGGCTTATGGTCCCCAGTCAAGAAAGAGATGTATC----AAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTT
s HiC_scaffold_1 95924004 1122 + 233722169 AGAGAGGACAACATG-------ATTTGGTGAAGGCTGGGAGCTAACAGAGTAGACAGAGATTGTTTACAAAAacaatctttttatatt--taaatatctttggAAAGAGCATATGAGTAAGCCAAAGTAGG--------TCAACATGGTATCTTCATACCTCTACATCTGGTTTCAGACATTTGATGGTCTGGCCCTCTCTAATTCCCAGGTCTGCCTTTACTTGTTCACAGGAGATGATCTGAGTTTCTCCAGGTTGCTTTGCACTAAAGGGAACATCACAGAGCAACACATGGATGCCCTTCGAGAATTAagttaagaataaataaatgagatttttGATCAATTTTCCTTGTTTCCTTAAGATGGTGATGGAGTACACTTAtataaaagcaaacaagcaaactaaCACACACAAACCTATAAGGGCTCATATACACCTCCATgcaggaagaaagggaaatagcACTGAGCAATCCTGAT-CCACTCCAACATCAAAATCTTTCCAGGGGGAAAACTGGCTTACATGAAGAGAGAGAGGACAGCTGCT-----AAGACAAACAGATAAATGTCAGACATGGGGTGATTTGCATGAATGATTGTGGTGGAGATGCACATTTAAGGCCTAGGTAGCTGCAAAAGTTAGTCCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGACCTACATAC------------------------TGTGAAGAGAGAATATGAAAATGG------ACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAA-GACATCAAACAGTTTTGAGAT---TCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAG-AAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTT

a score=8526
s chr3           92214421 1060 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGTGATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC----------TTTATTCTCTATTATTTATATGTGATGGTTT------------CTTGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCAATGAGGTCTGCTAAATA--AATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCC------ATTGATTGAATGATAATT----GAAGGGAAGCAAAGAAAAAAA--------------------------------GGCACTGAGGAGACTGGATG-------------------CCACTCTACCACCACAATCTGTCCAGGGAAAGTAGCATCATTCTTAGAGGGA---ATATGATTGATTCTAAAAGGCAAAAAATGTAGGTCAAATGTGACATTATCCAAAGAAGAGAAAG--ATGAAGGGGGAAACTCTATGCTGA-GTAG-GGTCACAGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGA-----AGACCCTGACTC------CATGGCTTACTGAGG---------------GCGCACTTGGT-ATCTTTTGCTTCTCTTCTT-TCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAAC-GAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGACAAATAGAGGGTCTCATGAAA----AAAGGCTTATGGTCCCCAGTCAAGAAAGAGA---TGTATCAAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAA------GAAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95890238 1159 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGGCAAAGACTGCTTAAAGAAACTGTCTTT--ATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAGCCAAAATAGTCATCAGGG-TATCTTCATACGTC--TACATCTGGTTTCATATATTTGATAGTCTA------CCTTCTCCATTTCCCAGGTCTGCCCTGACTTGTTCACAGGAGATGATCTGAGTGTCTCCGTCTTGCTCTGCACAACGGAGAAGATCACAGAGGACCAC--AAGGATGCCCTTCAAAAATTAAGTTGAATATAATTCT---AATTCTTGATCAATTTTCCGCGTTTCCTTAGGAGTTGATTgagt-acactttttaaaaagcaaacaaacaaacaaacacaaacctaTAAGGGCTCCTATACAATTCAAtgcagggagaaaagaaaatggaacataGCCATTTCAGAACCACTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCCTTGCacgaagagagagagaggacagctgCTAACACACAGATAA---ATGTCAAATCTGGGGTGATTTGCATGAATAAAAGTGATGGAGGTACAAATTTAACTTTTATGCAGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactcacaaggcagacagGCCGTGCCTTATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGAACTATGTACAG------------------------TGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACAT---CAAACAGTT----GTTAAATACAAA-----GATGTCAAAAGATAGGAGGGGATTATTGTCCTAAG-AAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCA--TGGCTTGGACCTTCCACTTCCCCTTGGGTGGGG

a score=7547
s chr3           92214421 1060 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGTGATTTCAGACTTTTAATGATCTGA-----------------TCAACCCT----TCTACTTTATTCTCTATTAT----TTATATGTGATGGTTT------------CTTGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCAT-------TGATTGAATGA---TAATTGAAGGGAAGCAAAGAAAAAAA----------------------------------------------GGCACTGAGGAGACTGG---ATG-----------CCACTCTACCACCACAATCTGTCCAGGGAAAGTAGCATCATTCTTAGAGGGAATAT----GATTGATTCTAAAAGGCAAAAAATGTAGGTCAAATGTGACATTATC--CAAAGAAGAGAAAGATGAAGGGGGAAACTC------TATGCTGAGTAGGGTCACAGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGAA-----GACCCTGACTC------CATGGCTTACTGAGGGCGCACTTGGTATC--------------TTTTGCTTCTCTTCTTT---CTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGATGTATCAAGC-----------GGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95903752 1196 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGACAAAGACTGCTTAAAGAAACTGTCTTT--ATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAGCCAAAATAGTCATCAGGG-TATCTTCATATGTC--TACATCTGGTTTCAGATATTTGATGGTCTGAACTTCTCCATTTCCAGGTCTGCCCTGACTTGGACTTCCATGTCTGTCCTGCCTTCACAGGAGATGATCTGAGTGTCTCCATCTTGCTCTGCAATACAGAGAACATCACAGAGGACCACATGGATGCCCTTCAAGAATTAAGTTGACAATAAACAATTCTGATTTTTGATCAATTTTCCATGTTTCCTCAAGGTGATGATTGAGTACACTTACttaaatgcaaacaaacaaacaaacaaacacaaacacaaacctaTAAGGGCTCCTATACACACCCATGCAGGAATTAAAGAAAATGGCACATAGCATTTCAGATCCGCTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCTTTTACATGAAGACAGACAGAGGACAGCTGCAAACACACACAGA-TAAATGTCAAATCTGGGGTGATTTGCATGAATAAAAGAGATGGAGGTGGAAATTTAAGTTTTATGC--AGT--GGCAAGAGGTGGCCCAGTGAACATAGTACCCACTGTGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGACTCAAACTCACAAGGCTGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATGTACAG------------------------TGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATGTAGCCATCAATGTAAG-TGACCAAGACAT---CAAAcagtttttaaattcaaagatGTCAAAAAGTAGG----------AGGGGATTATTGTTC---------AAAGAAACATAGAGAGCCTTTGAGAACAGGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCA--TGGCTTGGACTTTCCACTTCCCCTTGGGTGGGG

a score=5805
s chr3           92214752 729 + 160039680 ATTGAAGGGAA---GCAAAGAAAAAAAGGCACTGAGGAGACTGGATGCCACTCTACCACCACAATCTGTCC--AGGGAAAGTAGCATCATTCTTAGAGGGA-ATATGATTGATTCTAAAAGGCAAAAAATGTAGGTCAAAT--GTGACATTATCCAAAGAAGAGAAAGATGAAGGGGGAAACTCTATGCTGA-GTAGGGTCAC-AGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGA-AGACCC-----------TGACTCCATGGCTTACTGAGGGCGCACT---------------TGGTATCTTTTGCTTCTCTTCTT-TCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGA---TGTATCAAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95897456 762 + 233722169 ACTGAAAAGAacatgtataaagaaaatgacaCATAACATTTCAGA-ACCACTCTGTCATCAAAATCTTTCCTCAGAGAAAAGTGCTTTacatgaagagagagagaggacagctgCTAAGACACACAGA-TAAATGTCAAATCTGGGGTGTTTTGCATGAATAAAAGTGATGGAGGTGCAAATTTAAATCTTATGCAGTGCCAAGAGGTGGCTAAATGAACATATTACCCACAGTGAGAGGAAGTTGTTTGTTACCTCTGTTCACAGAAAAAGActcaaactcacaaggcagaCCGGCCCTGCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATGTACAG------------------------TGAAGAGAGAATATGAAAATGGCCTTAAGTACCGTAATGTAGCCATCAATTTAAG-TGACCAAGACAT---CAAAcagtttttaaattcaaagatGTCAAAAAGTAGG----------AGGGGATTATTGttcaaag-aaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCA--TGGCTTGGAACTTCCACTTCCCCTTGGGTGGGG

a score=6816
s chr3           92215830 469 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA--------------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT----TGATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCT
s HiC_scaffold_1 95891346 471 + 233722169 AATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGTGGGT--GTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCATAC-------AATTTGG--GGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCT

a score=7051
s chr3           92215830 495 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------TTAGTACTCTCATGAGC----------ACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATGGAGGATATCATGTGG-AGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCTTTTTTTTCTTTTCGTTttttttttat
s HiC_scaffold_1 95930664 497 + 233722169 AATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagc-ttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGA-AGCCTGGACTTGATTTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGG--GGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAAT

a score=6975
s chr3           92215830 469 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA--------------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCT
s HiC_scaffold_1 95904897 471 + 233722169 AATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCTATAC-------AATTTGG--GGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCT

a score=6517
s chr3           92215830 467 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA-------------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTT
s HiC_scaffold_1 95898167 468 + 233722169 AATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAG-ACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACTGATAGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCACAC-------AATTTGG--GGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattcttt

a score=7706
s chr3           92215835 477 + 160039680 CTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------TTAGTACTCTCATGAGCACA---------GTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCTTT-------TTTTTCTTTTC
s HiC_scaffold_1 95911680 485 + 233722169 CTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGT--------GGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACTTTATGTTTGTGGGATGAATGTTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAACTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGG--GGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTC

a score=12744
s chr3           92218806 712 + 160039680 TGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGGAAATGGCATGAGATTTTCAAAACAGGTTTGCCG--AAGCTGACGAAA----------------------AAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCC---ACCATGCCAGCAGAAGTGACCACCCAACAGGTGAAGGCCTCCCAG---------TCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGA-CTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCT-CCACCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAG
s HiC_scaffold_1 95833606 663 + 233722169 TGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTT--AGTAGAGATACTTTCTTTGGGAAAATGGcatgagat---aaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAA-----TATG-ACATGATAGTACATAAGCTTTTTCA-------------AATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGATACAAG-AAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCC---------------------------ATGTCCACTTCCACAACCACAAT---------GTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAA----CTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaata-----------ggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATC-----------ATATATCCTGCAATCCTTTACCCTGTAATCTGCCTGGGAAGGTTCCTGGCAG

a score=14146
s chr3           92218890 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95891930 555 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCTC

a score=14479
s chr3           92218890 601 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGA-TGCAGAAGAATCTTCTCCACCCTTCATCCT
s HiC_scaffold_1 95905481 535 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGG-TcatgaaaagggaaggaaatctGATTCACCTCCT-------TCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT

a score=14237
s chr3           92218890 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCC--------ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95931248 555 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTCATA-AAGTGCAAGAGAAAATCCAAAAAGTCTTAAGA------AGGGAATAC---TGTAAGCATGAGTAGA-AATGTGCCTTGGT----ATTGTGTAAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCTC

a score=13525
s chr3           92218890 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGG-ATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95925717 556 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTC------------------------------------------------------CAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT-TcatgaaaagggaaggaaatctGGCTCATCTCCT-------TCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCTC

a score=15248
s chr3           92218890 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCC----------ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95898750 582 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGT----ATAGCg-agtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCA---------------------------AAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCA------ATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TCATGAAAAGGGAAGGAACTCTG--------GCTCACCCCCTTTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTTTCAGCTGTAATCTACTTCCAAGGATTCCTC

a score=12832
s chr3           92219028 766 + 160039680 ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCACCCTT---CAT--------CCTCCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAAACTGCCT--------AATATTGTATTACTATTTTGGCTTTTTTCTATC
s HiC_scaffold_1 95912374 598 + 233722169 acATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCC---------------------------------------------------------------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT-TcatgaaaagggaaggaaatctGGCTCACCTCCT-------TCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTCACATATAATCTGCCTCCATG-GTTTCT--TGTCTCCCTACAGGGGA------ACTCTCA-----------------------------------------TCTCTCCCTTGGTCCCGTCC-----------CATAAT---------------------------GTCTTCTGAGCCTCTCTGTCACCT-----GGGAAATTATAACTAAACTTTCACATCCTG-AATAAAGTATTATATTTTTTGTGAGAG---gagaaatattttctgtcttctaaagTCACCTGTATTAACAATAccgtat---tattttgctttatttggatC

a score=4403
s chr3           92219142 93 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCA
s HiC_scaffold_1 95833967 93 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=18612
s chr3           92221503 388 + 160039680 gaactcaggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC-AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTAT----AGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 18289775 389 + 233722169 GAATCTACAAAGAGTGATATCGTAGACATCAAGGGATTGGTT-CTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAG---GGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGAGCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatgatcagaaaaagaagaaagccaaAGAGAAAGATACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACTTT-TGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=17933
s chr3           92221508 583 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAATAAACAAAAACGAAAAAAGGACCCAGACTC---------CAAAGTGTT-------TTCCTTAAAAAAAAATAATAatgc----ttgtcaga-------cattaa----------------tactttttcctttggaaaatattggttcatgtttgtagctacttttttgtttgggttgtttgatttgtttattatttg---ttcagtatttatttatttatttaggGtttttttttttgagacaga
s HiC_scaffold_1 60922632 607 + 233722169 CAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAA---GAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACATTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGA-ACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGG---------CAgaagctggggatggagccctTCCCGATTGGCGGCCAAGTGTTCTAGGccctacttaaaaataaaaaatcatcctGTGTTGTAAGGATGGTTTCCTTAATTGAACAGGTGTGTGGTGCCTTTACCTCTGGAACA--------AATATTTGGAGCAGATTTTCATTCTACCTAGTTAGTAGTGTTGGATCTTTactcttcagtgtttttcttttaatttc---ttttttttatttaaagaga

a score=15131
s chr3           92221508 379 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGC
s HiC_scaffold_1 52267816 355 + 233722169 caaAAAGAGTGATTTTGTAGACATCAAGGGA-------CTGTGCAAAAAAGAATGTCACACAAATGTCACCATGGCAAAACAGGAAGAGTGTCCAGTGTTACCCAGCATGCCGCTGGCACAGCTGGAAACAAGCAAGTAAA---GGGTAAGACACTTGCCAAGAGGACTGATGTGTGTATTCGGCATATTAAACACTGGACAAGTCGCGACAGCTGCCTGAAACGTGCCAAGGAAAAGGATCTGAAAAA--------------GAAGGAAGCCTGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC-CAAGAAATcagggc

a score=18534
s chr3            92221512 376 + 160039680 aagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCC
s HiC_scaffold_1 174026173 369 + 233722169 AAAGGTGATATTGTGGACATCAAGGGTAAGGATACTGTGCAAAAAGGAATGCCACACAAATGTTACCATGGCAAAACAGGAAGAGCCTACAGTGTCACCTAGCATGGTGTTGGCACTACAGTAAACAAGT-------TAAAGGCAAGACACTTGCCCAGAGGATTAATGTGCATGTGGAGCATATTAAACACTCAGC--GTTGGGATAACATCCTGAAATGTGTCAAGGAAAATGatcaggaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCCCTTTATATTTCTTGTC

a score=4407
s chr3           92225094 500 + 160039680 CCAAGGCCATTAGCCTCCTCTATGAAGGGTGTATACTATTTCCCATAATTCACA--AAAAGCATAGTACATAATAGGCAGAGAAATGACCTGACCT-CCACACATGGCT-GTTAAAGAAGAAGTCAAAATCACAGCTAAAA---TCCCTTTA-ATATTTCATTTCATCCTGTAGACAAATTATAC-CTACAAAACAGGAATAT--AAATGGGCCAGCGCATCAATGAATATGAATAACCTGAAGCAAAACAAATAGAATGCATGAGTTAGGACACAACAGAATTATAACAAAACAAAACAAAAAAAGAAATATTGACTTCAACAACAACAACAACAAAAGAACTTAGGAAACCAGT----AAGATCT-----TACTGACACTGAAATGGGG-----------GAACACCCA--------CTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGATTTGCATTTTGGTTGGGAAATT-CTCAGTCAGTTC
s HiC_scaffold_1 95924630 522 + 233722169 CCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGA--CCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCA--GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGAC---CTACATACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAACAGTTTTGAG---------ATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAG-----AGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTTTTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCC

a score=9040
s chr3           92249214 1018 + 160039680 AGAGGGGTCGACATGTTAAAGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGT------GATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC-----TTTATTCTCTATTATTTATATGTGATG------GTTTCT------TGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCAT-------TGATTGAATG-------ATAATTGAAGGGAAGCAAA---------------------------------------------GAAAAAAAGG------CACTGAGGAGACTGGATGCCACTCTACCACCACAATCTGTCCAGGG---AAAGTAGCAT-CATTCTTAGAGGGAATATGATTGATTCTAAAAGGCAAA-AAATGTAGGTCAAATGTGACATTATC--CAAAGAAGAGAAAGATGAAGGGGGAAACTCTATGC-TGAGTAG-GGTCACAGGTAGCCCAATGATGTTAGCAC------------ACAGGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAA-ATAGAAGACC---------CTGACTC-CATGGCTTACT-GAGGGCGCACTTG------------GTATCTTTTG----CTTCTCTTCTTTCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTACACTCTAGCAACGAACTAAGG--ATGAACTAAAGAGGGACAAATAACCTTGAA----TTTAAGACAAATAGAGGGTCTCATGAAA----AAAGGCTTATGGTCCCCAGTCAAGAAAGAGATGTATC----AAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTT
s HiC_scaffold_1 95924004 1122 + 233722169 AGAGAGGACAACATG-------ATTTGGTGAAGGCTGGGAGCTAACAGAGTAGACAGAGATTGTTTACAAAAacaatctttttatatt--taaatatctttggAAAGAGCATATGAGTAAGCCAAAGTAGG--------TCAACATGGTATCTTCATACCTCTACATCTGGTTTCAGACATTTGATGGTCTGGCCCTCTCTAATTCCCAGGTCTGCCTTTACTTGTTCACAGGAGATGATCTGAGTTTCTCCAGGTTGCTTTGCACTAAAGGGAACATCACAGAGCAACACATGGATGCCCTTCGAGAATTAagttaagaataaataaatgagatttttGATCAATTTTCCTTGTTTCCTTAAGATGGTGATGGAGTACACTTAtataaaagcaaacaagcaaactaaCACACACAAACCTATAAGGGCTCATATACACCTCCATgcaggaagaaagggaaatagcACTGAGCAATCCTGAT-CCACTCCAACATCAAAATCTTTCCAGGGGGAAAACTGGCTTACATGAAGAGAGAGAGGACAGCTGCT-----AAGACAAACAGATAAATGTCAGACATGGGGTGATTTGCATGAATGATTGTGGTGGAGATGCACATTTAAGGCCTAGGTAGCTGCAAAAGTTAGTCCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGACCTACATAC------------------------TGTGAAGAGAGAATATGAAAATGG------ACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAA-GACATCAAACAGTTTTGAGAT---TCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAG-AAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTT

a score=8526
s chr3           92249233 1060 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGTGATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC----------TTTATTCTCTATTATTTATATGTGATGGTTT------------CTTGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCAATGAGGTCTGCTAAATA--AATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCC------ATTGATTGAATGATAATT----GAAGGGAAGCAAAGAAAAAAA--------------------------------GGCACTGAGGAGACTGGATG-------------------CCACTCTACCACCACAATCTGTCCAGGGAAAGTAGCATCATTCTTAGAGGGA---ATATGATTGATTCTAAAAGGCAAAAAATGTAGGTCAAATGTGACATTATCCAAAGAAGAGAAAG--ATGAAGGGGGAAACTCTATGCTGA-GTAG-GGTCACAGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGA-----AGACCCTGACTC------CATGGCTTACTGAGG---------------GCGCACTTGGT-ATCTTTTGCTTCTCTTCTT-TCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAAC-GAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGACAAATAGAGGGTCTCATGAAA----AAAGGCTTATGGTCCCCAGTCAAGAAAGAGA---TGTATCAAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAA------GAAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95890238 1159 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGGCAAAGACTGCTTAAAGAAACTGTCTTT--ATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAGCCAAAATAGTCATCAGGG-TATCTTCATACGTC--TACATCTGGTTTCATATATTTGATAGTCTA------CCTTCTCCATTTCCCAGGTCTGCCCTGACTTGTTCACAGGAGATGATCTGAGTGTCTCCGTCTTGCTCTGCACAACGGAGAAGATCACAGAGGACCAC--AAGGATGCCCTTCAAAAATTAAGTTGAATATAATTCT---AATTCTTGATCAATTTTCCGCGTTTCCTTAGGAGTTGATTgagt-acactttttaaaaagcaaacaaacaaacaaacacaaacctaTAAGGGCTCCTATACAATTCAAtgcagggagaaaagaaaatggaacataGCCATTTCAGAACCACTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCCTTGCacgaagagagagagaggacagctgCTAACACACAGATAA---ATGTCAAATCTGGGGTGATTTGCATGAATAAAAGTGATGGAGGTACAAATTTAACTTTTATGCAGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactcacaaggcagacagGCCGTGCCTTATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGAACTATGTACAG------------------------TGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACAT---CAAACAGTT----GTTAAATACAAA-----GATGTCAAAAGATAGGAGGGGATTATTGTCCTAAG-AAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCA--TGGCTTGGACCTTCCACTTCCCCTTGGGTGGGG

a score=7547
s chr3           92249233 1060 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGTGATTTCAGACTTTTAATGATCTGA-----------------TCAACCCT----TCTACTTTATTCTCTATTAT----TTATATGTGATGGTTT------------CTTGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCAT-------TGATTGAATGA---TAATTGAAGGGAAGCAAAGAAAAAAA----------------------------------------------GGCACTGAGGAGACTGG---ATG-----------CCACTCTACCACCACAATCTGTCCAGGGAAAGTAGCATCATTCTTAGAGGGAATAT----GATTGATTCTAAAAGGCAAAAAATGTAGGTCAAATGTGACATTATC--CAAAGAAGAGAAAGATGAAGGGGGAAACTC------TATGCTGAGTAGGGTCACAGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGAA-----GACCCTGACTC------CATGGCTTACTGAGGGCGCACTTGGTATC--------------TTTTGCTTCTCTTCTTT---CTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGATGTATCAAGC-----------GGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95903752 1196 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGACAAAGACTGCTTAAAGAAACTGTCTTT--ATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAGCCAAAATAGTCATCAGGG-TATCTTCATATGTC--TACATCTGGTTTCAGATATTTGATGGTCTGAACTTCTCCATTTCCAGGTCTGCCCTGACTTGGACTTCCATGTCTGTCCTGCCTTCACAGGAGATGATCTGAGTGTCTCCATCTTGCTCTGCAATACAGAGAACATCACAGAGGACCACATGGATGCCCTTCAAGAATTAAGTTGACAATAAACAATTCTGATTTTTGATCAATTTTCCATGTTTCCTCAAGGTGATGATTGAGTACACTTACttaaatgcaaacaaacaaacaaacaaacacaaacacaaacctaTAAGGGCTCCTATACACACCCATGCAGGAATTAAAGAAAATGGCACATAGCATTTCAGATCCGCTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCTTTTACATGAAGACAGACAGAGGACAGCTGCAAACACACACAGA-TAAATGTCAAATCTGGGGTGATTTGCATGAATAAAAGAGATGGAGGTGGAAATTTAAGTTTTATGC--AGT--GGCAAGAGGTGGCCCAGTGAACATAGTACCCACTGTGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGACTCAAACTCACAAGGCTGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATGTACAG------------------------TGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATGTAGCCATCAATGTAAG-TGACCAAGACAT---CAAAcagtttttaaattcaaagatGTCAAAAAGTAGG----------AGGGGATTATTGTTC---------AAAGAAACATAGAGAGCCTTTGAGAACAGGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCA--TGGCTTGGACTTTCCACTTCCCCTTGGGTGGGG

a score=5805
s chr3           92249564 729 + 160039680 ATTGAAGGGAA---GCAAAGAAAAAAAGGCACTGAGGAGACTGGATGCCACTCTACCACCACAATCTGTCC--AGGGAAAGTAGCATCATTCTTAGAGGGA-ATATGATTGATTCTAAAAGGCAAAAAATGTAGGTCAAAT--GTGACATTATCCAAAGAAGAGAAAGATGAAGGGGGAAACTCTATGCTGA-GTAGGGTCAC-AGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGA-AGACCC-----------TGACTCCATGGCTTACTGAGGGCGCACT---------------TGGTATCTTTTGCTTCTCTTCTT-TCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGA---TGTATCAAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95897456 762 + 233722169 ACTGAAAAGAacatgtataaagaaaatgacaCATAACATTTCAGA-ACCACTCTGTCATCAAAATCTTTCCTCAGAGAAAAGTGCTTTacatgaagagagagagaggacagctgCTAAGACACACAGA-TAAATGTCAAATCTGGGGTGTTTTGCATGAATAAAAGTGATGGAGGTGCAAATTTAAATCTTATGCAGTGCCAAGAGGTGGCTAAATGAACATATTACCCACAGTGAGAGGAAGTTGTTTGTTACCTCTGTTCACAGAAAAAGActcaaactcacaaggcagaCCGGCCCTGCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATGTACAG------------------------TGAAGAGAGAATATGAAAATGGCCTTAAGTACCGTAATGTAGCCATCAATTTAAG-TGACCAAGACAT---CAAAcagtttttaaattcaaagatGTCAAAAAGTAGG----------AGGGGATTATTGttcaaag-aaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCA--TGGCTTGGAACTTCCACTTCCCCTTGGGTGGGG

a score=6899
s chr3           92250642 469 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA--------------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT----TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCT
s HiC_scaffold_1 95891346 471 + 233722169 AATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGTGGGT--GTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCATAC-------AATTTGG--GGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCT

a score=7122
s chr3           92250642 500 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------TTAGTACTCTCATGAGC----------ACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGG-AGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCTTTTTTTTCTTTTCGTTTttttttttattatg
s HiC_scaffold_1 95930664 500 + 233722169 AATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagc-ttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGA-AGCCTGGACTTGATTTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGG--GGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAG--CTATTGCTCTTTTCTCTAATGTG

a score=7058
s chr3           92250642 469 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA--------------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCT
s HiC_scaffold_1 95904897 471 + 233722169 AATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCTATAC-------AATTTGG--GGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCT

a score=6600
s chr3           92250642 467 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA-------------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTT
s HiC_scaffold_1 95898167 468 + 233722169 AATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAG-ACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACTGATAGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCACAC-------AATTTGG--GGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattcttt

a score=7789
s chr3           92250647 477 + 160039680 CTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------TTAGTACTCTCATGAGCACA---------GTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCTTT-------TTTTTCTTTTC
s HiC_scaffold_1 95911680 485 + 233722169 CTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGT--------GGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACTTTATGTTTGTGGGATGAATGTTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAACTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGG--GGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTC

a score=12744
s chr3           92253619 712 + 160039680 TGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGGAAATGGCATGAGATTTTCAAAACAGGTTTGCCG--AAGCTGACGAAA----------------------AAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCC---ACCATGCCAGCAGAAGTGACCACCCAACAGGTGAAGGCCTCCCAG---------TCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGA-CTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCT-CCACCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAG
s HiC_scaffold_1 95833606 663 + 233722169 TGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTT--AGTAGAGATACTTTCTTTGGGAAAATGGcatgagat---aaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAA-----TATG-ACATGATAGTACATAAGCTTTTTCA-------------AATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGATACAAG-AAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCC---------------------------ATGTCCACTTCCACAACCACAAT---------GTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAA----CTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaata-----------ggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATC-----------ATATATCCTGCAATCCTTTACCCTGTAATCTGCCTGGGAAGGTTCCTGGCAG

a score=14146
s chr3           92253703 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95891930 555 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCTC

a score=14479
s chr3           92253703 601 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGA-TGCAGAAGAATCTTCTCCACCCTTCATCCT
s HiC_scaffold_1 95905481 535 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGG-TcatgaaaagggaaggaaatctGATTCACCTCCT-------TCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT

a score=14237
s chr3           92253703 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCC--------ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95931248 555 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTCATA-AAGTGCAAGAGAAAATCCAAAAAGTCTTAAGA------AGGGAATAC---TGTAAGCATGAGTAGA-AATGTGCCTTGGT----ATTGTGTAAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCTC

a score=13525
s chr3           92253703 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGG-ATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95925717 556 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTC------------------------------------------------------CAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT-TcatgaaaagggaaggaaatctGGCTCATCTCCT-------TCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCTC

a score=15248
s chr3           92253703 624 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTCGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCC----------ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95898750 582 + 233722169 AAAATGTTTTCCCCAAGACTGA-GGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGT----ATAGCg-agtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCA---------------------------AAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCA------ATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TCATGAAAAGGGAAGGAACTCTG--------GCTCACCCCCTTTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTTTCAGCTGTAATCTACTTCCAAGGATTCCTC

a score=12832
s chr3           92253841 766 + 160039680 ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAGGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCACCCTT---CAT--------CCTCCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAAACTGCCT--------AATATTGTATTACTATTTTGGCTTTTTTCTATC
s HiC_scaffold_1 95912374 598 + 233722169 acATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCC---------------------------------------------------------------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT-TcatgaaaagggaaggaaatctGGCTCACCTCCT-------TCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTCACATATAATCTGCCTCCATG-GTTTCT--TGTCTCCCTACAGGGGA------ACTCTCA-----------------------------------------TCTCTCCCTTGGTCCCGTCC-----------CATAAT---------------------------GTCTTCTGAGCCTCTCTGTCACCT-----GGGAAATTATAACTAAACTTTCACATCCTG-AATAAAGTATTATATTTTTTGTGAGAG---gagaaatattttctgtcttctaaagTCACCTGTATTAACAATAccgtat---tattttgctttatttggatC

a score=4403
s chr3           92253955 93 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCA
s HiC_scaffold_1 95833967 93 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=18612
s chr3           92256316 388 + 160039680 gaactcaggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC-AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTAT----AGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 18289775 389 + 233722169 GAATCTACAAAGAGTGATATCGTAGACATCAAGGGATTGGTT-CTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAG---GGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGAGCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatgatcagaaaaagaagaaagccaaAGAGAAAGATACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACTTT-TGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=17933
s chr3           92256321 583 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAATAAACAAAAACGAAAAAAGGACCCAGACTC---------CAAAGTGTT-------TTCCTTAAAAAAAAATAATAatgc----ttgtcaga-------cattaa----------------tactttttcctttggaaaatattggttcatgtttgtagctacttttttgtttgggttgtttgatttgtttattatttg---ttcagtatttatttatttatttaggGtttttttttttgagacaga
s HiC_scaffold_1 60922632 607 + 233722169 CAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAA---GAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACATTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGA-ACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGG---------CAgaagctggggatggagccctTCCCGATTGGCGGCCAAGTGTTCTAGGccctacttaaaaataaaaaatcatcctGTGTTGTAAGGATGGTTTCCTTAATTGAACAGGTGTGTGGTGCCTTTACCTCTGGAACA--------AATATTTGGAGCAGATTTTCATTCTACCTAGTTAGTAGTGTTGGATCTTTactcttcagtgtttttcttttaatttc---ttttttttatttaaagaga

a score=15131
s chr3           92256321 379 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGC
s HiC_scaffold_1 52267816 355 + 233722169 caaAAAGAGTGATTTTGTAGACATCAAGGGA-------CTGTGCAAAAAAGAATGTCACACAAATGTCACCATGGCAAAACAGGAAGAGTGTCCAGTGTTACCCAGCATGCCGCTGGCACAGCTGGAAACAAGCAAGTAAA---GGGTAAGACACTTGCCAAGAGGACTGATGTGTGTATTCGGCATATTAAACACTGGACAAGTCGCGACAGCTGCCTGAAACGTGCCAAGGAAAAGGATCTGAAAAA--------------GAAGGAAGCCTGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC-CAAGAAATcagggc

a score=18534
s chr3            92256325 376 + 160039680 aagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCC
s HiC_scaffold_1 174026173 369 + 233722169 AAAGGTGATATTGTGGACATCAAGGGTAAGGATACTGTGCAAAAAGGAATGCCACACAAATGTTACCATGGCAAAACAGGAAGAGCCTACAGTGTCACCTAGCATGGTGTTGGCACTACAGTAAACAAGT-------TAAAGGCAAGACACTTGCCCAGAGGATTAATGTGCATGTGGAGCATATTAAACACTCAGC--GTTGGGATAACATCCTGAAATGTGTCAAGGAAAATGatcaggaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCCCTTTATATTTCTTGTC

a score=4407
s chr3           92259895 500 + 160039680 CCAAGGCCATTAGCCTCCTCTATGAAGGGTGTATACTATTTCCCATAATTCACA--AAAAGCATAGTACATAATAGGCAGAGAAATGACCTGACCT-CCACACATGGCT-GTTAAAGAAGAAGTCAAAATCACAGCTAAAA---TCCCTTTA-ATATTTCATTTCATCCTGTAGACAAATTATAC-CTACAAAACAGGAATAT--AAATGGGCCAGCGCATCAATGAATATGAATAACCTGAAGCAAAACAAATAGAATGCATGAGTTAGGACACAACAGAATTATAACAAAACAAAACAAAAAAAGAAATATTGACTTCAACAACAACAACAACAAAAGAACTTAGGAAACCAGT----AAGATCT-----TACTGACACTGAAATGGGG-----------GAACACCCA--------CTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGATTTGCATTTTGGTTGGGAAATT-CTCAGTCAGTTC
s HiC_scaffold_1 95924630 522 + 233722169 CCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGA--CCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCA--GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGAC---CTACATACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAACAGTTTTGAG---------ATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAG-----AGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTTTTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCC

a score=8944
s chr3           92283900 1017 + 160039680 AGAGGGGTCAACATGTTAAAGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGT------GATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC-----TTTATTCTCTATTATTTATATGTGATG------GTTTCT------TGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCAT-------TGATTGAATG-------ATAATTGAAGGGAAGCAAA---------------------------------------------GAAAAAAAGG------CACTGAGGAGACTGGATGCCACTCTACCACCACAATCTGTCCAGGG---AAAGTAGCAT-CATTCTTAGAGGGAATATGATTGATTCTAAAAGGCAAA-AAATGTAGGTCAAATGTGACATTATC--CAAAGAAGAGAAAGATGAAGGGGGAAACTCTATGC-TGAGTAG-GGTCACAGGTAGCCCAATGATGTTAGCAC------------ACAGGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAA-ATAGAAGACC---------CTGACTC-CATGGCTTACT-GAGGGCGCACTTG------------GTATCTTTTG----CTTCTCTTCTTTCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAGTG---TAAATGGCTTTACACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGATGTATC----AAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTT
s HiC_scaffold_1 95924004 1122 + 233722169 AGAGAGGACAACATG-------ATTTGGTGAAGGCTGGGAGCTAACAGAGTAGACAGAGATTGTTTACAAAAacaatctttttatatt--taaatatctttggAAAGAGCATATGAGTAAGCCAAAGTAGG--------TCAACATGGTATCTTCATACCTCTACATCTGGTTTCAGACATTTGATGGTCTGGCCCTCTCTAATTCCCAGGTCTGCCTTTACTTGTTCACAGGAGATGATCTGAGTTTCTCCAGGTTGCTTTGCACTAAAGGGAACATCACAGAGCAACACATGGATGCCCTTCGAGAATTAagttaagaataaataaatgagatttttGATCAATTTTCCTTGTTTCCTTAAGATGGTGATGGAGTACACTTAtataaaagcaaacaagcaaactaaCACACACAAACCTATAAGGGCTCATATACACCTCCATgcaggaagaaagggaaatagcACTGAGCAATCCTGAT-CCACTCCAACATCAAAATCTTTCCAGGGGGAAAACTGGCTTACATGAAGAGAGAGAGGACAGCTGCT-----AAGACAAACAGATAAATGTCAGACATGGGGTGATTTGCATGAATGATTGTGGTGGAGATGCACATTTAAGGCCTAGGTAGCTGCAAAAGTTAGTCCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGACCTACATAC-TGTGAAGAGA----------------GAATATGAAAATGGACTAAA--GTACCAAAATGTAGCCATCAATTTAAGCACAAC--AAAGACATCAAACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGG----------AGGGGATTATCGTCCCAAG-AAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTT

a score=8321
s chr3           92283919 1059 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGTGATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC----------TTTATTCTCTATTATTTATATGTGATGGTTT------------CTTGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCAATGAGGTCTGCTAAATA--AATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCC------ATTGATTGAATGATAATT----GAAGGGAAGCAAAGAAAAAAA--------------------------------GGCACTGAGGAGACTGGATG-------------------CCACTCTACCACCACAATCTGTCCAGGGAAAGTAGCATCATTCTTAGAGGGA---ATATGATTGATTCTAAAAGGCAAAAAATGTAGGTCAAATGTGACATTATCCAAAGAAGAGAAAG--ATGAAGGGGGAAACTCTATGCTGA-GTAG-GGTCACAGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGA-----AGACCCTGACTC------CATGGCTTACTGAGG---------------GCGCACTTGGT-ATCTTTTGCTTCTCTTCTT-TCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAAC-GAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGACAAATAGAGGGTCTCATGAAA----AAAGGCTTATGGTCCCCAGTCAAGAAAGAGA---TGTATCAAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAA------GAAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95890238 1159 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGGCAAAGACTGCTTAAAGAAACTGTCTTT--ATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAGCCAAAATAGTCATCAGGG-TATCTTCATACGTC--TACATCTGGTTTCATATATTTGATAGTCTA------CCTTCTCCATTTCCCAGGTCTGCCCTGACTTGTTCACAGGAGATGATCTGAGTGTCTCCGTCTTGCTCTGCACAACGGAGAAGATCACAGAGGACCAC--AAGGATGCCCTTCAAAAATTAAGTTGAATATAATTCT---AATTCTTGATCAATTTTCCGCGTTTCCTTAGGAGTTGATTgagt-acactttttaaaaagcaaacaaacaaacaaacacaaacctaTAAGGGCTCCTATACAATTCAAtgcagggagaaaagaaaatggaacataGCCATTTCAGAACCACTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCCTTGCacgaagagagagagaggacagctgCTAACACACAGATAA---ATGTCAAATCTGGGGTGATTTGCATGAATAAAAGTGATGGAGGTACAAATTTAACTTTTATGCAGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactcacaaggcagacagGCCGTGCCTTATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGAACTATG-----------------------TACAGTGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACAT---CAAACAGTT----GTTAAATACAAA-----GATGTCAAAAGATAGGAGGGGATTATTGTCCTAAG-AAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCA--TGGCTTGGACCTTCCACTTCCCCTTGGGTGGGG

a score=7344
s chr3           92283919 1059 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAATACTGTCTGTTGAAGTTATTAAATCTACATAGAAAGCTAATAAATGAAATCCAATGTATGATTCTGACCTAACCTTATATCTCCCTGCCTGTGATTTCAGACTTTTAATGATCTGA-----------------TCAACCCT----TCTACTTTATTCTCTATTAT----TTATATGTGATGGTTT------------CTTGTTCTTCTCCCTAGGGAGTACCACTGGGGAACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCAT-------TGATTGAATGA---TAATTGAAGGGAAGCAAAGAAAAAAA----------------------------------------------GGCACTGAGGAGACTGG---ATG-----------CCACTCTACCACCACAATCTGTCCAGGGAAAGTAGCATCATTCTTAGAGGGAATAT----GATTGATTCTAAAAGGCAAAAAATGTAGGTCAAATGTGACATTATC--CAAAGAAGAGAAAGATGAAGGGGGAAACTC------TATGCTGAGTAGGGTCACAGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGAA-----GACCCTGACTC------CATGGCTTACTGAGGGCGCACTTGGTATC--------------TTTTGCTTCTCTTCTTTCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGATGTATCAAGC-----------GGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95903752 1196 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGACAAAGACTGCTTAAAGAAACTGTCTTT--ATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAGCCAAAATAGTCATCAGGG-TATCTTCATATGTC--TACATCTGGTTTCAGATATTTGATGGTCTGAACTTCTCCATTTCCAGGTCTGCCCTGACTTGGACTTCCATGTCTGTCCTGCCTTCACAGGAGATGATCTGAGTGTCTCCATCTTGCTCTGCAATACAGAGAACATCACAGAGGACCACATGGATGCCCTTCAAGAATTAAGTTGACAATAAACAATTCTGATTTTTGATCAATTTTCCATGTTTCCTCAAGGTGATGATTGAGTACACTTACttaaatgcaaacaaacaaacaaacaaacacaaacacaaacctaTAAGGGCTCCTATACACACCCATGCAGGAATTAAAGAAAATGGCACATAGCATTTCAGATCCGCTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCTTTTACATGAAGACAGACAGAGGACAGCTGCAAACACACACAGA-TAAATGTCAAATCTGGGGTGATTTGCATGAATAAAAGAGATGGAGGTGGAAATTTAAGTTTTATGC--AGT--GGCAAGAGGTGGCCCAGTGAACATAGTACCCACTGTGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGACTCAAACTCACAAGGCTGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttc--------------tctaccAGAA------CTATGTACAGTGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATGTAGCCATCAATGTAAG-TGACCAAGACAT---CAAAcagtttttaaattcaaagatGTCAAAAAGTAGG----------AGGGGATTATTGTTC---------AAAGAAACATAGAGAGCCTTTGAGAACAGGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCA--TGGCTTGGACTTTCCACTTCCCCTTGGGTGGGG

a score=5600
s chr3           92284250 728 + 160039680 ATTGAAGGGAA---GCAAAGAAAAAAAGGCACTGAGGAGACTGGATGCCACTCTACCACCACAATCTGTCC--AGGGAAAGTAGCATCATTCTTAGAGGGA-ATATGATTGATTCTAAAAGGCAAAAAATGTAGGTCAAAT--GTGACATTATCCAAAGAAGAGAAAGATGAAGGGGGAAACTCTATGCTGA-GTAGGGTCAC-AGGTAGCCCAATGATGTTAGCACACA------------GGTATTATTTCTCTGTGTTTATGGAAAAAAATCTGTAGTAAATAGA-AGACCC-----------TGACTCCATGGCTTACTGAGGGCGCACT---------------TGGTATCTTTTGCTTCTCTTCTT-TCTAAGAAACTTATAAATATATGAGGAAAATACCCCTCCACATCTGAAAAAAAAAGTGTAAATGGCTTTA-------CACTCTAGCAACGAACTAAGGATGAACTAAAGAGGGACAAATAACCTTGAATTTAAGA-----CAAATAGAGGGTCTCATGAAAAAAGGCTTATGGTCCCCAGTCAAGAAAGAGA---TGTATCAAGCGGTTGGAAAAGC-TCCAAGTACC---ACAGTTACTGGAAGCAAGAGGAAAG------AAAAGGACTCTGAGTCATAAG-ACTCAACCTAGTAATGATAGCCAAGGGTGGGATATTTTCTATTTTGTAGAGTCCCTGTCAGGCCAGTTATGGATGAATGTGCACTTAAgttatctcct-tctagcctagcaaggctggctgtgaccatctgctgcccctggagcagag
s HiC_scaffold_1 95897456 762 + 233722169 ACTGAAAAGAacatgtataaagaaaatgacaCATAACATTTCAGA-ACCACTCTGTCATCAAAATCTTTCCTCAGAGAAAAGTGCTTTacatgaagagagagagaggacagctgCTAAGACACACAGA-TAAATGTCAAATCTGGGGTGTTTTGCATGAATAAAAGTGATGGAGGTGCAAATTTAAATCTTATGCAGTGCCAAGAGGTGGCTAAATGAACATATTACCCACAGTGAGAGGAAGTTGTTTGTTACCTCTGTTCACAGAAAAAGActcaaactcacaaggcagaCCGGCCCTGCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATG-----------------------TACAGTGAAGAGAGAATATGAAAATGGCCTTAAGTACCGTAATGTAGCCATCAATTTAAG-TGACCAAGACAT---CAAAcagtttttaaattcaaagatGTCAAAAAGTAGG----------AGGGGATTATTGttcaaag-aaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCA--TGGCTTGGAACTTCCACTTCCCCTTGGGTGGGG

a score=6918
s chr3           92285327 469 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA--------------------TGAGCACAGTAAGTTCACTGGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCT
s HiC_scaffold_1 95891346 471 + 233722169 AATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCATAC-------AATTTGG--GGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCT

a score=7206
s chr3           92285327 495 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------TTAGTACTCTCATGAGC----------ACAGTAAGTTCACTGGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGG-AGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCTTTTTTTTCTTTTCGTTttttttttat
s HiC_scaffold_1 95930664 497 + 233722169 AATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagc-ttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGA-AGCCTGGACTTGATTTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGG--GGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAAT

a score=7150
s chr3           92285327 469 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA--------------------TGAGCACAGTAAGTTCACTGGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCT
s HiC_scaffold_1 95904897 471 + 233722169 AATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCTATAC-------AATTTGG--GGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCT

a score=6672
s chr3           92285327 467 + 160039680 aacaCCTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA-------------------TGAGCACAGTAAGTTCACTGGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCA--TGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTT
s HiC_scaffold_1 95898167 468 + 233722169 AATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGT--------ATTTGGAGGGGGTCTG--TTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAG-ACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACTGATAGAAACTTAAGACTAGGTAACAT--GGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCACAC-------AATTTGG--GGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattcttt

a score=7896
s chr3           92285332 477 + 160039680 CTGTACCAGCCCATTACAGGGAAAT-CCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------TTAGTACTCTCATGAGCACAGT----------AAGTTCACTGGGTCCAAAT----TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATC--CAGGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAA-ACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTTCTTT-------TTTTTCTTTTC
s HiC_scaffold_1 95911680 485 + 233722169 CTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGT--------GGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGT---GGTGTGCACACTTTATGTTTGTGGGATGAATGTTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGA-AGCCTGGACTTGAACTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGG--GGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTC

a score=12949
s chr3           92288304 710 + 160039680 TGAGGATATTCTGTTCACATAAATAGTATTTTCCAATGGTGTGAAACAGAAATAGATTCTTAGGGGAAATGGCATGAGATTTTCAAAACAGGTTTGCCG--AAGCTGACGAAA-AAAATGTGTAAGTAAAAG---------------AGGCAATCCAGGACCTCCTAAAATAGTATGGGAAAT-----TTGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCC---ACCATGCCAGCAGAAGTGACCACCCAACAAGTGAAGGCCTCCCAG---------TCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCT-CCACCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAG
s HiC_scaffold_1 95833606 663 + 233722169 TGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTT--AGTAGAGATACTTTCTTTGGGAAAATGGcatgagat---aaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACT--CAAGAATGTTCTAAGAGAGAGCAATAATATG-ACATGATAGTACATAAGCTTTTTCA-------------AATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGATACAAG-AAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTC--------------------CA----CTTCCACAACCACAATG------------TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAA----CTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaata---ggcTCTTCTATT-------TCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATC-----------ATATATCCTGCAATCCTTTACCCTGTAATCTGCCTGGGAAGGTTCCTGGCAG

a score=14513
s chr3           92288388 622 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95891930 555 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCTC

a score=14846
s chr3           92288388 599 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGA-TGCAGAAGAATCTTCTCCACCCTTCATCCT
s HiC_scaffold_1 95905481 535 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGG-TcatgaaaagggaaggaaatctGATTCACCTCCT-------TCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT

a score=14720
s chr3           92288388 622 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCC--------ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95931248 555 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAA-----GGGAATACTGTAAGCATGAGTAGA-----AATGTGCCTTGGT----ATTGTGTAAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCTC

a score=14055
s chr3           92288388 622 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAG-----GGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGG-ATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95925717 556 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCA---------------------------AAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT-TcatgaaaagggaaggaaatctGGCTCATCTCCT-------TCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCTC

a score=15332
s chr3           92288388 679 + 160039680 AAAACAGGTTTGCCGAAGCTGACGAAAAAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGTATGCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCC----------ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTCAC-----------AGAAAAGGCA--TTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGCTATACTGAGA
s HiC_scaffold_1 95898750 652 + 233722169 AAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGCATGAGTAG-----CAATGTGCCTTGGT----ATAGCg-agtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCC---------------------------ATGCCCACCTCCACAACAGCA------ATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TCATGAAAAGGGAAGGAACTCTGGCTCACCCC--------CTTTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTTTCAGCTGTAATCTACTTCCAAGGATTCCTCTCTCCCAGCCAGAGGAACTCGCATCTCACCCTTGGTCCCATCCCATGATGTCTTCTGAGCCTCCCTGAAA

a score=12998
s chr3           92288524 840 + 160039680 ATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCC-CAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTC-TGGATGCAGAAGAATCTTCTCCACCCTT---CAT--------CCTCCATGTGCTTATGATGGCTCCTCACAGAAAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGCTATACTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAAACTGCCT--------AATATTGTATTACTAT------TTTGG--CTTTTTTCTATCCTGTGGTAGAGATTTTAAATTTTAATTCAATGTTTCCTAAATGTAGTCACATCAAAGACCAATACAAACttttc
s HiC_scaffold_1 95912374 676 + 233722169 acATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCC---------------------------------------------------------------------------------ATGCCCACCTCCACAACAGCA------ATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT-TcatgaaaagggaaggaaatctGGCTCACCTCCT-------TCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTCACATATAATCTGCCTCCATG-GTTTCT--TGTCTCCCTACAGGGGA------ACTCTCA-----------------------------------------TCTCTCCCTTGGTCCCGTCC-----------CATAAT---------------------------GTCTTCTGAGCCTCTCTGTCACCT-----GGGAAATTATAACTAAACTTTCACATCCTG-AATAAAGTATTATATTTTTTGTGAGAG---gagaaatattttctgtcttctaaagTCACCTGTATTAACAATAccgtattattttgctttatttggatCTCTGTTTAATCATGAGGCCTGGCTCTCAAAATT-------GTGTTGTCTGAATCATGGGACATGCAAAATTAATCTCATCATTTC

a score=4525
s chr3           92288638 93 + 160039680 TGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCA
s HiC_scaffold_1 95833967 93 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=18350
s chr3           92290998 388 + 160039680 gaactcaggaagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC-AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTAT----AGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 18289775 389 + 233722169 GAATCTACAAAGAGTGATATCGTAGACATCAA-GGGATTGGTTCTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAG---GGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGAGCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatgatcagaaaaagaagaaagccaaAGAGAAAGATACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACTTT-TGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=17670
s chr3           92291003 596 + 160039680 caggaagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAATAAACAAAAACGAAAAAAGGACCCAGACTC---------CAAAGTGTT-------TTCCTTAAAAAAAAATAATAatgc----ttgtcaga-------cattaa----------------tactttttcttttggaaaatattggttcatgtttgtagctaatttttcgtttgggttgtttgatttatttattatttgttcagtatttatttatttaGGGtttttttttttgagacagaatttgtgtattttcttt
s HiC_scaffold_1 60922632 600 + 233722169 CAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAA---GAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACATTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGA-ACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGG---------CAgaagctggggatggagccctTCCCGATTGGCGGCCAAGTGTTCTAGGccctacttaaaaataaaaaatcatcctGTGTTGTAAGGATGGTTTCCTTAATTGAACAGGTGTGTGGTGCCTTTACCTCTGGAACA--------AATATTTGGAGCAGATTT----------TCATTCTACCTAGTTAGTA-GTGTTGGATCTTTactc-ttcagtgtttttctttt--------aatttcttttttttattt

a score=15039
s chr3           92291003 379 + 160039680 caggaagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGC
s HiC_scaffold_1 52267816 355 + 233722169 caaAAAGAGTGATTTTGTAGACATCAAGGGA-------CTGTGCAAAAAAGAATGTCACACAAATGTCACCATGGCAAAACAGGAAGAGTGTCCAGTGTTACCCAGCATGCCGCTGGCACAGCTGGAAACAAGCAAGTAAA---GGGTAAGACACTTGCCAAGAGGACTGATGTGTGTATTCGGCATATTAAACACTGGACAAGTCGCGACAGCTGCCTGAAACGTGCCAAGGAAAAGGATCTGAAAAA--------------GAAGGAAGCCTGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC-CAAGAAATcagggc

a score=18189
s chr3            92291007 376 + 160039680 aagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAG-AAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAAAGAG-AAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCC
s HiC_scaffold_1 174026173 369 + 233722169 AAAGGTGATATTGTGGACATCAAGGGTAAGGATACTGTGCAAAAAGGAATGCCACACAAATGTTACCATGGCAAAACAGGAAGAGCCTACAGTGTCACCTAGCATGGTGTTGGCACTACAGTAAACAAGT-------TAAAGGCAAGACACTTGCCCAGAGGATTAATGTGCATGTGGAGCATATTAAACACTCAGC--GTTGGGATAACATCCTGAAATGTGTCAAGGAAAATGatcaggaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCCCTTTATATTTCTTGTC

a score=4546
s chr3           92295596 479 + 160039680 CCAAGGCCATTAGCCTCCTCTATGAAGGGCGTATACTATTTCCCATAATTCACA--AAAAGCATAGTACATAATAGGCAGAAGATATGACCTGACCT-TCACACTTGGTT-GTTAAAGAAGAAGTCAAAATCACAGCTAAAA---TCCCTTTA-ATATTTCATTTCATCCTGTAGACAAATTATAC-CTACAAAACAGGAATAT--AAATGGGCCAGCGCATCAATGAATATGAATAACCTGATACAGAACAAATAGAATGCATGAGTTAGGACACAAGAGAATTATAACAAAACAAAAAGAAATATTGACTTCGACAACAACAACAGAAGAACTTA-GTAAACCAGT----GAGATCT-----TACTGACACTGAAATGGGG-----------GAACACCCA--------CTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCGCATTTGTAGGGTCCCAGTCCAGCTCGTCATGCACTGATTTGCATTTTGGTTGGGAAATT
s HiC_scaffold_1 95924630 509 + 233722169 CCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGA---CCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCA--GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGAC---CTACATACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAAC-AGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCC----CAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTTTTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATT

a score=29492
s chr3           92315575 2325 + 160039680 GAGAAGATGGAAGAGGGATGAACATGTTAAAGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATGAGTTTGACCTAACTTTATATCTCCCTGCCTGAGATTTCAGACTTTTAATGATCTGATCAACCCT-----TCTACTTTACTCTCTATTAATTACATGTGATGGTTT------------CTTGTTCTGAACCCTAGGGAGTACCACTGGGAACACCCAATGAGGTCTGCTAAA----TAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAAT--------------TGAAGGGAAGCAAAGAAAAAAA-------------------------------------------------------GGCACTGAGGAGACTGGATGCCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTC---------TAGAGAGAATATGATTAATTCTAAAAGGCAAAGAATGTAGGTCAAATTTGACATTATCCAAAGAAAAGAAAG--ATGAAGGGGGAAACTCTATGCTGAGTAGGGTCACAGGCA---GCCCAGTGATGTTAGCAC------------ATGGGTATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAA-ATAGAAGACC----CTGACCC------CATGGCTTACTGAGGGGGGCACT---------------TGGTATCTTTTGTTTCTCTTCTT-TCTAACAAACTTGTAAATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGAAAGTGTAAATGGCTTTACACACTAG--------CAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCATGAAA----AAAGGCTTATGCTTCCAGTCAAGAAAGAGATGTATC---AAACAGTTGGAAAAGC-TCCAAGTACCACAATTACTGGAAGCAAGAAGAAAGAAAA---------GGACTCTTGAGTCACAAGACTCAACCTAGTAATGATAGCCATGGGTGGGAT----------ATTTCCTATT--TTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGAT-CCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTGGTACTGTCATGAGC----------------------ACAGTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTG-TGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATC--CAGGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAA-ACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGG------GAAAGTGGCATGAGATTTTC--AAAAAAGGTTTGCT--AAAGCTGATGAAATAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGG-GTTCTACAGTTCGATAAG--CCTAGTTTCTCCATTGTGATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGTCCACCCAAGAATAAATGAGGGTTTCC-CAGTCATCAGGAC-TGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95929520 2283 + 233722169 GAAAAGTGGGGAGATGGA-GGACA----GCAGGATTTGGTGAAGGCTAGGAGCTGACAGCGTAGACAAAGAGTGCTTACAAAAActatctttatatatt--taaatctctTTGGAAAGACAATGTGAGTAATCCAAAATAGATCATCAGGGTATCTTCATTCTTCTACATCTGG--TTTCAGACATTTGATGGTCTGATCCTCTCTATGTCTCAGGTCTGCCCTTACTTGTTCACAGGAGATGATCTGAGTTTCGCCATCTTGCTTTGTACTACAGGGAACATCA--GAGAGGACCACATGGATTCCCTTCAAAAATTAAGTTGAGAATAAATAATTGTGATTTTTGTTCActttcccttgtttccttaagatGGGGATGGAGAACACTCATATAAaggcaaacaagcaaacaaacacacacaaacctaAAAGGGCTCATATACACCTCCAggcaggaagaaagggaaatggcACTGAGCAGTCCTGAT-CCACTCTAACATCAAAATCTTTCCTTGGGGAAAAGTGCCTTAcatgaagacagagagagaaca-----gatgctaagacaaacagaaaa-atgtgaaatctggGGTGATTTCCATAAATGAAAGTGGTGCAGGTgcaaatttaata-tatatgtagCTGCAAGAATTGGTTCAATGAACTTATTACCCTCTGTGAGTGGCAAGTGTTTGTTTCCTCTGTTCATACAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGAACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTAGCAGACCTACATAC------------------------TGTGAAGAGAGACTATGAAAATGGACTTAAGTACCAAAATGTAGCCATCAATTTAAGCACAA--TAAAGACAT-CAAACAGT-------CTTGAGATTCAAA---------GATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTGAGAACCTGTTGGAAAAACCTTCAAATTCCCACACAACCATCAGGTAAATGAAACAGACTGCTCCGGTGGACTCT-GATTCACAAG-----------CAGTTAATGCAGTGGATGGGATTCTGGAGCAGGTTTTTTATTACTTGCA-AGTACCTGTC-AGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAG--------GGGGTCTGTTTCTT-----GCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagc-ttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTG-GACTTGATTTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGGG--GTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTC---------------TGTGTAGCTATTGCTCTT------TTCT-----CTAATGTGCCCAGT-------------GAAGTTCTCAGGGGATAATCATGACAGGGATTG--------AGTG---------------AGATGCTCAGGACTTTTGAACTTGTGACTGCATTTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAA-----GGGAATACTGTAAGC----ATGAGTAGAAATGTGCCTTGGTATTGTGTAAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCC---------------------------GGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------------------------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCTC

a score=27442
s chr3           92315578 2583 + 160039680 AAGATGGAAGAGGGATGAACATGTTAAAGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATGAGTTTGACCTAACTTTATATCTCCCTGCCTGAGATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC-----TTTACTCTCTATTAATTACATGTGATGGTTT------------CTTGTTCTGAACCCTAGGGAGTACCACTGGGAACACCCAATGAGGTCTGCTAAA---TAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAATTGA------------------AGGGAAGCAAAGAAA---------------------------------------------------AAAAGGCACTGAGGAGACTGGATGCCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTC-------TAGAGAGAATATGATTAATTCTAAAAGGCAAAGAATGTAGGTCAAATTTGACATTAT--CCAAAGAAAAGAAAGATGAAGGGGGAAACTCTATGC-TGAGTAG-GGTCACAGGCAGCCCAGTGA---TGTTAGCACATG---------GGTATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAAATAGAAGACCCTGACCCC-----------ATGGCTTACTGAGGGGGGC----ACT---------TGGTATCTTTTGTTTCTCTTCTTTCTAACAAACTTGTAAATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGAA-----------AGTGTAA--ATGGCTTTACACACTAGCAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCATGAAAAAAGGC-TTATGCTTCCAGTCAAGAAAGAGATGTATC---AAACAGTTGGAAAAGC-TCCAAGTACCACAATTACTGGAAGCAAGAAGAAAGAAAAGGAC--------TCTTGAGTCACAAG-ACTCAACCTAGTAATGATAGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGAT-CCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTGGTACTGTCATGAGC----------------------ACAGTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTGTGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATC--CAGGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAA-ACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTA-GGGAAAGTGGCATGAGATTTTCAAAAAAGGTTTGCTAAAGCTGATGAAATAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTG--------ATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGTCCACCCAAGAATAA--------ATGAGGGTTTCCCAGTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCACCCTT---CAT--------CCTCCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTTCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAAAAAAAAAGAACCCCTTTGGTGATGGTCTAATAAATACATTCTTTCTTGCAAAACTGCCT--------AATACTGTATTATT
s HiC_scaffold_1 95910537 2419 + 233722169 AAAGTGGGGAAGGAGAGGACA----ACATCATTTGGTGAAGGCTGGGAGCTAACAGAGTAGACAGAGTTTGCTTACAAAAACTATCTTTACATATTTAAATCTCTTTGGAAAGAGTGTGTGAGTAAGCCAAAATATGTCAACAGGA--TATCTTCATA---CTCTACATCTGGTTTCAGTCATTTGATGGTCTGATCCTCTCTGTTTCCCATGTCTGCCCTTACTTGTTCACAGGAGATGATCTGAGTTTCTCCATCTTGCTTTGCACTTCACAGAACATCACAGAGGAC-CACATGGATGCCCTTCAAGAATTAAGTGGAGAATAAATAATTGTGATTTTTGTTCACTTTTCCTTGTTTCCTTAAGATGGTTATGGAGTACACTCAtataaaagcaaacaagcaaacaaacacacacaaacctaAAAGGGCTCATACACACTTCCATgcaggaagaaagggaaatggaACTGAGCAGTCCTGAC-CCAATCTGACATCAAAATCTTTCCTTGGGGAAAAGTGCCTTacataaagacagagagaggacagctgcaaacacaaacagaaaaatgt----caaatCTGGGGTGATTTCCATAAATAAAAGTGGTGCAGGTgcaaatttaatatatatgtagCTGCAAGAGTTGGTTCAATGAACTTATTATCCTCTGTGAGAGGCAAGTGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTTCCCTGTCACATGTGGTTTATTAGATGGAACGAGAACCAGCCCACAGTGTCATCTTAGATCTCTCCTTTCTCTAGCAGACCTACATAC-TGTGAAGAGAG----------ATTATGAAAATGGACTTAAGTACCATAATGTAGCCATCACTTTAAGCAC----AACAAA--------GACATCAAACGGTCATGAGAATCAAAGATGTCAAA--------AAGTAGGAG--------------GGCATTACTGTCCCAAGAAAGATAGAGATCCTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTT--TTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGT--------GGGTCTGTTTCTT-----GCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGT-GGTGTGCACACTTTATGTTTGTGGGATGAATGTTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTG-GACTTGAACTAAAAGACTGAATGAAGTA---GTTTTCTCTTTGCCATAC-------AATTTGGG--GTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTC---------------TGTGTAGCTATTGCTCTT------TTCTCCAATGTGCCCAGTAAAGTTCTCAAGGG-ATAAAGATGACAGGGAT------------TGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCCCTTTGTGAGAAAATG--------TTTTCC-----------CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCA--------TAAAGTCTTAAGGAGGAGTAGCA---------ATGTGC-CTtggtattgcatgtt-----------tttcttctttttagtacATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------------------------------------------------------------------------------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT--Tca----tgaaaagggaaggaaatctGGCTCACCTCCT-------TCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTCACATATAATCTGCCTCCATG-GTTTCT--TGTCTCCCTACAGGGGAA------CTCTCA-----------------------------------------TCTCTCCCTTGGTCCCGTCC-----------CATAAT---------------------------GTCTTCTGAGCCTCTCTGTCACCT-----GGGAAATTATAACTAAACTTTCACATCCTG-AATAAAGTATTATATTTTTTGTGAGAG---gagaaatattttctgtcttctaaagTCACCTGTATTAACAATAccgtattatt

a score=29014
s chr3           92315583 2317 + 160039680 GGAAGAGGGATGAACATGTTAAAGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATG--AGTTTGACCTAACTTTATATCTCCCTGCCTGAGATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC-----TTTACTCTCTATTAATTACATGTGATG------GTTTCT------TGTTCTGAACCCTAGGGAGTACCACTGGG-AACACCCA-ATGAGGTCTGCTAAATAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAAT--------------TGAAGGGAAGCAA------------------------------------------------AGAAAAAAAGG-------CACTGAGGAGACTGGATGCCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTC-----TAGAGAGAATATGATTAATTCTAAAAGGCAAAGA-ATGTAGGTCAAATTTGACATTATCCAAAGAAAAGA--AAGATGAAGGGGGAAACTCTATGC-TGAGTAG-GGTCACAGGCAGCCCAGTGATGTTAGCAC--------------ATGGGTATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAA-ATAGAAGACC----CTGACCC------CATGGCTTACTGAGGGGGGCACT---------------TGGTATCTTTTGTTTCTCTTCTT-TCTAACAAACTTGTA-AATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGA---AAGTGT--AAATGGCTTTACACACTAGCAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCATGAAA----AAAGGCTTATGCTTCCAGTCAAGAAAGAGATGTATC----AAACAGTTGGAAAAGC-TCCAAGTACCACAATTACTGGAAGCAAGAAGAAAGAAAAGGAC--------TCTTGAGTCACAAG-ACTCAACCTAGTAATGATAGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGAT-CCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTGGTACT--GTCATGAGCACAGTAAGTTCGGTCGGTCCAAATTGAT----------------CAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTG-TGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATC--CAGGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAA-ACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGAAAGTGG-CATGAGA-------TTTTCAAAAAAGGTTTGCT--AAAGCTGATGAAATAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTG-----ATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGTCCACCCAAGAATAA--------ATGAGGGTTTCCCAGTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95924001 2272 + 233722169 GAAAGAGAGGACAACATG-------ATTTGGTGAAGGCTGGGAGCTAACAGAGTAGACAGAGATTGTTTACAAAAacaatctttttatatttaaatatctttggAAAGAGCATATGAGTAAG--CCAAAGTAGGTCAACATGG--TATCTTCATACCTCTACATCTGG--TTTCAGACATTTGATGGTCTGGCCCTCTCTAATTCCCAGGTCTGCCTTTACTTGTTCACAGGAGATGATCTGAGTTTCTCCAGGTTGCTTTGCACTAAAGGGAACATCACAGAGCAACACATGGATGCCCTTCGAGAATTAagttaagaataaataaatgagatttttGATCAATTTTCCTTGTTTCCTTAAGATGGTGATGGAGTACACTTAtataaaagcaaacaagcaaactaaCACACACAAACCTATAAGGGCTCATATACACCTCCATgcaggaagaaagggaaatagcACTGAGCAATCCTGAT-CCACTCCAACATCAAAATCTTTCCAGGGGGAAAACTGGCTTACATGAAGAGAGAGAGGACAGCTGCT-----AAGACAAACAGATAAATGTCAGACATGGGGTGATTTGCATGAATGATTGTGGTGGAGATGCACATTTAAGGCCTAGGTAGCTGCAAAAGTTAGTCCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGT-TTGTTTCCTC-TGTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGACCTACATACTGTGAAGAGAGAATA------------TGAAAATGGACTAAAGTACCAAAATG-----------TAGCCATCAATTTAAGCACAAC-AAAGACAT-CAAACAGT-------------TTTGAGATTCAAAGA---TGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTC-AGAACCTGGTGAGTCTGGTATTTTCAGTC--------GGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATTTCATGTTTGTGAGATGGATGTTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGagc-ttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTG-GACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCAATAC-------AATTTG--TGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTC---------------TGTGTAACTATTGC-----------TCTGTTCTCTAATGTGCCCAGT-------------GACGTTCTCAGGGGATAAACCTGACAGAGATTG--------AGTG---------------AGATGCTCAGGACTTTTGAACTTGTGACTGCCTTTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGC----ATGAGTA-GCAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCC---------------------------GGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCA------------------------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGT--Tca----tgaaaagggaaggaaatctGGCTCATCTCCT-------TCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCTC

a score=28655
s chr3           92315605 2295 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATGAGTTTGACCTAACTTTATATCTCCCTGCCTGAGATTTCAGACTTTTAATGATCTGATCAACCCTTCTAC----------TTTACTCTCTATTAATTACATGTGATGGTTT------------CTTGTTCTGAACCCTAGGGAGTACCACTGGGAACACCCAATGAGGTCTGCTAAATA--AATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAATTGA--------------AGGGAAGCAAAGAAAAAAA--------------------------------GGCACTGAGGAGACTGGATG-------------------CCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTCT---AGAGAGA-ATATGATTAATTCTAAAAGGCAAAGAATGTAGGTCAAATTTGACATTATCCAAAGAAAAGAAAG--ATGAAGGGGGAAACTCTATGCTGA-GTAG-GGTCACAGGCAGCCCAGTGATGTTAGCAC-----ATGGG-------TATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAAATAGA-----AGACCCTGAC------CCCATGGCTTACTGAGGGGGGCACTTGG---------------TATCTTTTGTTTCTCTTCTT-TCTAACAAACTTGTAAATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGAAAGTGTAAATGGCTTTACACACTAG--------CAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCATGAAA----AAAGGCTTATGCTTCCAGTCAAGAAAGAGA---TGTATCAAACAGTTGGAAAAGC-TCCAAGTACC---ACAATTACTGGAAGCAAGAAGAAA------GAAAAGGACTCTTGAGTCACAAG-ACTCAACCTAGTAATGATAGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGAT-CCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAG---------TTCTTGAGAGGGTCTGCTCTTTTTGGTAC-TGTCATGAGCACAGTAAGTTCGGTCGGTCCAAATT----GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTG-TGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATC--CAGGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAA-ACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGAAAGTGG-CATGAGA-------TTTTCAAAAAAGGTTTGCT--AAAGCTGATGAAATAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTG-----ATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGTCCACCCAAGAATAAATGAGGGTTTCC-CAGTCATCAGGAC-TGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC
s HiC_scaffold_1 95890238 2247 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGGCAAAGACTGCTTAAAGAAACTGTCTTTATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAG--CCAAAATAGTCATCAGGG-TATCTTCATACGTCTACATCTGG--TTTCATATATTTGATAGTCTA------CCTTCTCCATTTCCCAGGTCTGCCCTGACTTGTTCACAGGAGATGATCTGAGTGTCTCCGTCTTGCTCTGCACAACGGAGAAGATCACAGAGGAC-CACAAGGATGCCCTTCAAAAATTAAGTTGAATATAATTCT---AATTCTTGATCAATTTTCCGCGTTTCCTTAGGA-GTTGATTgagtacactttttaaaaagcaaacaaacaaacaaacacaaacctaTAAGGGCTCCTATACAATTCAAtgcagggagaaaagaaaatggaacataGCCATTTCAGAACCACTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCCTTGCacgaagagagagagaggacagctgCTAACACACAGATAA---ATGTCAAATCTGGGGTGATTTGCATGAATAAAAGTGATGGAGGTACAAATTTAACTTTTATGCAGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactcacaaggcagacagGCCGTGCCTTATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGA------ACTATGTACAG------------------TGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACA---TCAAACAGTTG-----------TTAAATACAAA-----GATGTCAAAAGATAGGAGGGGATTATTGTCCTAAGAAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCT-GATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGTGGGT--GTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGC-TTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTG-GACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCATAC-------AATTTGGG--GTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTC---------------TGTGTAGCTATTGC-----------TCTGTTCTCTAATGGGCGCAGT-------------GATGTTCTCAGGGGATAATGATGAGAGGGATTG--------AGTG---------------AGATGCTCAGGACCTTTGAACTTGTGACTGCCTTTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGC----ATGAGTA-GCAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCC---------------------------GGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------------------------------------------------------------CAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaaggaaggaaatctgGCTCACCTCCT-------TCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCA-AGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCTC

a score=28902
s chr3           92315605 2272 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATGAGTTTGACCTAACTTTATATCTCCCTGCCTGAGATTTCAGACTTTTAATGATCTGA-----------------TCAACCCT----TCTACTTTACTCTCTATTAA----TTACATGTGATGGTTT------------CTTGTTCTGAACCCTAGGGAGTACCACTGGGAACACCCAATGAGGTCTGCTAAA---TAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAATTGA--------------AGGGAAGCAAAGAAAAAAA----------------------------------------------GGCACTGAGGAGACTGG---ATG-----------CCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTCTAGAGAGA-----ATATGATTAATTCTAAAAGGCAAAGAATGTAGGTCAAATTTGACATTATC--CAAAGAAAAGAAAGATGAAGGGGGAAACTC------TATGCTGAGTAGGGTCACAGGCAGCCCAGTGATGTTAGCAC-----ATGGG-------TATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAAATAGAA-----GACCCTGACCC------CATGGCTTACTGAGGGGGGCACT---------------TGGTATCTTTTGTTTCTCTTCTT-TCTAACAAACTTGTAAATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGAAAGTGTAAATGGCTTTACACACTAGCAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCATGAAA----AAAGGCTTATGCTTCCAGTCAAGAAAGAGA---TGTATCAAACAGTTGGAAAAGC-TCCAAGTACCACAATTACTGGAAGCAAGAAGAAAGAAAA---------GGACTCTTGAGTCACAAG-ACTCAACCTAGTAATGATAGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGA-GATCCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAG---------TTCTTGAGAGGGTCTGCTCTTTTTGGTAC-TGTCATGAGCACAGTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTG-TGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATC--CAGGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAA-ACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTA-GGGAAAGTGGCATGAGATTTTCAAAAAAGGTTTGCTAAAGCTGATGAAATAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTG-----ATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGTCCACCCAAGAATAAATGAGGGTTTCC-CAGTCATCAGGAC-TGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCT
s HiC_scaffold_1 95903752 2264 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGACAAAGACTGCTTAAAGAAACTGTCTTTATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAG--CCAAAATAGTCATCAGGG-TATCTTCATATGTCTACATCTGG--TTTCAGATATTTGATGGTCTGAACTTCTCCATTTCCAGGTCTGCCCTGACTTGGACTTCCATGTCTGTCCTGCCTTCACAGGAGATGATCTGAGTGTCTCCATCTTGCTCTGCAATACAGAGAACATCACAGAGGAC-CACATGGATGCCCTTCAAGAATTAAGTTGACAATAAACAATTCTGATTTTTGATCAATTTTCCATGTTTCCTCAAGGTGATGATTGAGTACACTTACttaaatgcaaacaaacaaacaaacaaacacaaacacaaacctaTAAGGGCTCCTATACACACCCATGCAGGAATTAAAGAAAATGGCACATAGCATTTCAGATCCGCTCTGTCATCAAAATCTTTCCTAGGAGAAAAGTGCTTTTACATGAAGACAGACAGAGGACAGCTGCAAACACACACAGA-TAAATGTCAAATCTGGGGTGATTTGCATGAATAAAAGAGATGGAGGTGGAAATTTAAGTTTTATGC--AGT--GGCAAGAGGTGGCCCAGTGAACATAGTACCCACTGTGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGACTCAAACTCACAAGGCTGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGA------ACTATGTACAG------------------TGAAGAGAGAATATGAAAATGGACTTAAGTACCA-TAATG---TAGCCATCAATGTAAGTGACCAAGACATCAAAcagtttttaaattcaaa---------gatGTCAAAAAGTAGGAGGGGATTATTGTTCAAAGAAACATAGAGAGCCTTTGAGAACAGGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTCAGGTGGACTCT-GATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAG-ACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGC-TTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTG-GACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCTATAC-------AATTTGGG--GTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTC---------------TGTGTAGCTATTGCTC------TGTTCTCTAATGTGCCCAGTGACGT-TCTCAGGGGATAATGATGAGAGGGAT------------TGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCTTTTGTGAGAAAATG--------TTTTCC-----------CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGC----ATGAGTA-GCAATGTGCCTTGGTATTGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCC---------------------------AGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------------------------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTcatgaaaagggaaggaaatctGATTCACCTCCT-------TCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT

a score=28125
s chr3           92315605 2337 + 160039680 AGAACTTGTAGAAAAGAAAGAACAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATGAGTTTGACCTAACTTTATATCTCCCTGCCTGAGATTTCAGACTTTTAATGATCTGATCAACCCTTCTA------------------CTTTACTCTCTATTAA----TTACATGTGATGGTT------------TCTTGTTCTGAACCCTAGGGAGTACCACTGGGAACACCCAATGAGGTCTGCTAAA----TAAATTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAATTGAAGG----------GAAGCAAAGAAAAAAAGGCAC---------------TGAGGA-------------------------------GACTGGAT----------------------------------------------------------------GCCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTCT---AGAGAGA-ATATGATTAATTCTAAAAGGCAAAGAATGTAGGTCAAATTTGA--CATTATCCAAAGAAAAGAAAGATGAAGGGGGAAACTCTATGCTGA-GTAGGGTCAC-AGGCAGCCCAGTGATGTTAGCAC-----ATGGG-------TATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAAATAGAA-----GACCCTGACCC------CATGGCTTACTGAGGGGGGCACT---------------TGGTATCTTTTGTTTCTCTTCTT-TCTAACAAACTTGTAAATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGAAAGTGTAAATGGCTTTACACACTAGCAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCATGAAA----AAAGGCTTATGCTTCCAGTCAAGAAAGAGA-TGTATCA-AACAGTT--GGAAAAGCTCCAAGTACC---ACAATTACTGGAAGCAAGAAGAAAGAAAAGGACT------------CTTGAGTCACAAG-ACTCAACCTAGTAATGATAGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGAT-CCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTGGTACTGTCA-------------------TGAGCACAGTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTG-TGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATC--CAGGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAA-ACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTA-GGGAAAGTGGCATGAGATTTTCAAAAAAGGTTTGCTAAAGCTGATGAAATAAATGTGTAA-GTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTG-----ATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTT---CCACCATGCCAGCAGAAGTGTCCACCCAAGAATAAATGAGGGTTTCC-CAGTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCTCCATGTGCTTATGATGGCTCCTC--------ACAGAGAAG---GCATTT--CTCTCAGGCTGATCTCCTGCTGCTTTC
s HiC_scaffold_1 95896981 2406 + 233722169 AGGATTTGGAGAAGGCTGGGAGCTGACAGAGTAGACAAAGACTGCTTAAAGAAACTGTCTTTATATACTTAAACTTCTTTGGAAAGAGCATGTGAGTAAG--CCAAAATAGTCATCAGGG-TATCTTCATATGTCTACATCTGG--TTTCAGATATTTGATGGTCTGACCTCCATTTCCAGGTCTGCCCTGACTTGGACTTCCATGTCTGTCCTGCCTTCACAGGTGATGATCCAAGTGTCACCATCTTGCTCTGCACTACAGAGAACATCAC--AGAGCACCACATGGATGCCCTTCAAGAATTAAGTTGACAATAAACATTTCTGATTTTTGATCAATTTTCCATGTTCCCTCAAGGTGATGATTGAGTACACttatttaaaagcaaacaaacaaacacacacaaacacaaatctaTAAGGACTCCTATACACACCATGCAGGAAATGTACCCTACTGAATTCCATGCAGGAATTCATGTACTGAAAAGAacatgtataaagaaaatgacaCATAACATTTCAGAACCACTCTGTCATCAAAATCTTTCCTCAGAGAAAAGTGCTTTacatgaagagagagagaggacagctgCTAAGACACACAGA-TAAATGTCAAATCTGGGGTGTTTTGCATGAATAAAAGTGATGGAGGTGCAAATTTAAATCTTATGCAGTGCCAAGAGGTGGCTAAATGAACATATTACCCACAGTGAGAGGAAGTTGTTTGTTACCTCTGTTCACAGAAAAAGActcaaactcacaaggcagaCCGGCCCTGCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctaccAGA------ACTATGTACAG------------------TGAAGAGAGAATATGAAAATGGCCTTAAGTACC-GTAATG---TAGCCATCAATTTAAGTGACCAAGACATCAAAcagtttttaaattcaaa---------gatGTCAAAAAGTAGGAGGGGATTATTGttcaaagaaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCATC-------AGGTAAATGAAACAGACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAG--------GGGGTCTGTT--TCTTGATATCCTCAATGTTTGTTGAATATAATCTGAG-ACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGC-TTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTG-GACTTGAAATAAAAGACTGAATGAAGTA---GTTTTCCCTTTGCCACAC-------AATTTGGG--GTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattcttta---------------tgtgtagCTATTGCTC------TGTTCTCTAATGTGCCCAGTGACGT-TCTCAGGGGATAATGATGAGAGGGAT------------TGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCTTTTGTGAGAAAATG--------TTTTCC-----------CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAA-----GGGAATATTGTAAGC----ATGAGTA-GCAATGTGCCTTGGTATAGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------------------------------------------------------------CAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTCATGAAAAGGGAAGGAA-------CTCTGGCTCACCCCCTTTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTTTCAGCTGTAATCTACTTCCAAGGATTCCTCTCTCCCAGCCAGAGGAACTCGCATCTCACCCTTGGTCCCATCCCATGATGTCTTC

a score=24325
s chr3           92316501 1403 + 160039680 AGGACTCTTGAGTCAC-AAGACTCAAC-----CTAGTAATGAT--AGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGATCCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTGGTACTGT------CATGAGCACAGTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTGTGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATCCA--GGCAACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAAACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAATCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCA-TTTGA---TGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGAAAGTGGCATGAGATTTTCAAAAAAGGTTTGCTAAAGCTGATGAAATAAA-TGTGTAAGTAAAAG---------------AGGCAATCCAGGACC--------TCCTAAAATAGTATGGGAAATTTGCATGCCCACATAGGTACACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTGATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTTCC---ACCATGCCAGCAGAAGTGTCCACC-CAAGAATAAATGAGGGTTTCCC-AGTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTC-ACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCATGTGCTTATGATGGCTCCTCACAG
s HiC_scaffold_1 95832991 1278 + 233722169 AGGGTCTCTGGGTCACCAGGATTTAACATTGGCTGGAGATGATgaaacaatg-------tattttttatttt-taggggtCCTGTCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAAACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCA-GTTCCGATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGTTGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTAAGCGAAACTTATGACTGATACA-ATCATACAATATATTGGTTTGCATTGGCTTTATTGGTAGATAGG--TTGATGTTcacatggaaaaacaaagtgccaAGGAAAGTTG-GAtttgaatt--aaagaaaacaaaat---tatttttctttc--caaattttcaGTG----------TCACTATAAAGATATCTTGTCTTA-GCAGTTGGGAAATCCTTTAGTTCTTCC-------------------------TTCTAA-TGGGACTTCATAACACTTTGAAACTTGTGACTGCCT--------------TTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTT--AGTAGAGATACTTTCTTTGGGAAAATGGcatgagataa-aagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGACATG-----ATAG-TACATAAGCTTTTTCA-------------AATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTAC-TTTCAGATCCTGAGATACAAGAA-AATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA------------------------------------------------------------CAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaata---------ggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATATCCTGCAA----TCCTTTACCCTGTA------ATCTGCCTGGGAAGGTTCCTGGCAG

a score=4597
s chr3           92317467 122 + 160039680 AGTGCAAGCAGCCGTGCCAGCCTCC------TCCTGTG---TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCT
s HiC_scaffold_1 95899009 125 + 233722169 AGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCT

a score=6053
s chr3           92317473 172 + 160039680 AGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTC-CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 95833902 157 + 233722169 AGCAGCAGTGCAAGCAGCCT------TGCCAGCCACC------TCCTGTG----GTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCC

a score=4853
s chr3           92317476 89 + 160039680 AGCCGTGCCAGCCTCC------TCCTGTG---TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCA
s HiC_scaffold_1 95833962 98 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=4452
s chr3           92317499 90 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCT
s HiC_scaffold_1 95905754 84 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT

a score=4583
s chr3           92317499 90 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCT
s HiC_scaffold_1 95892203 84 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCT

a score=4470
s chr3           92317499 90 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCT
s HiC_scaffold_1 95931520 84 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT

a score=4682
s chr3           92317499 117 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCC
s HiC_scaffold_1 95925990 106 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT-----GTGCATCCTGCCCCATCCTGCC

a score=5417
s chr3           92317499 145 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCC
s HiC_scaffold_1 95899023 129 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTC----------CTGTGCATCCTGCCCCACCC

a score=5717
s chr3           92317499 93 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCA
s HiC_scaffold_1 95833967 93 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=3791
s chr3           92317533 112 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 95905734  85 + 233722169 CTCCAAAGTGCCCTGA---------------------------GCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC

a score=3809
s chr3           92317533 112 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 95931500  85 + 233722169 CTCCAAAGTGCCCTGA---------------------------GCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC

a score=5873
s chr3           92317533 112 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 95899003 112 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC

a score=3934
s chr3           92317560 85 + 160039680 CCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 95892183 85 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC

a score=4074
s chr3           92317560 85 + 160039680 CCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 95925970 85 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCC

a score=5182
s chr3           92317560 111 + 160039680 CCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTC
s HiC_scaffold_1 95899003 111 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTC

a score=5350
s chr3           92317560 111 + 160039680 CCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTC
s HiC_scaffold_1 95833947 111 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTC

a score=5279
s chr3           92317587 145 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTTCCACCATGCCAGCAGAAGTGTCCACC
s HiC_scaffold_1 95899003 130 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCT------------CCAAAGTG---TCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCC

a score=5034
s chr3           92317587 142 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTTCCACCATGCCAGCAGAAGTGTCC
s HiC_scaffold_1 95833947 127 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCT------------CCAAAGTG---TCCTGAGCCATGTCCACTTCCACAACCACAATGTCC

a score=4694
s chr3           92317587 84 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTC
s HiC_scaffold_1 95892183 84 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTC

a score=4834
s chr3           92317587 84 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTC
s HiC_scaffold_1 95925970 84 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTC

a score=4816
s chr3           92317587 84 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTC
s HiC_scaffold_1 95905734 84 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTC

a score=4834
s chr3           92317587 84 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTC
s HiC_scaffold_1 95931500 84 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTC

a score=5954
s chr3           92320905 140 + 160039680 gCAGAAGAAAGAGAAGCCAAAGAGAAGAGCACCTGGGTACAGTTGAAGTGCCAGCCTGCACCACCTATAGAACCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGC
s HiC_scaffold_1 52268032 139 + 233722169 GCCAAGGAAAAGGATCTGAAAAAGAAGGAAGCCTGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC-CAAGAAATcagggc

a score=6788
s chr3           92320906 370 + 160039680 CAGAAGAAAGAGAAGCCAAAGAGAAGAGCACCTGGGTACAGTTGAAGTGCCAGCCTGCACCACCTATAGAACCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAATAAACAAAAAAGAAATAAAGGAC--CCTGACT-----CCAA--------------AATTAAAAAGAAATAAAGGACCCTGACTCCAAAG--TGTTTTCCTTAAATAAAAAAAAAAGTGCTTGTCAGACATTGTTTTTCCTTTGGA--AAAT-CTTGGTTCATGTTTGTAGCTACTCTTTTGTTTGGGTTGTTTGATTTATTTATTGTTTTTTAGTATTTATTTATTTTGGGTTttttctttttttgagacaga
s HiC_scaffold_1 60922871 368 + 233722169 CGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGA-ACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGGC-------AgaagctggggatggagccctTCCCGATTGGCGGCCAAGTGTTCTAGGccctacttaaaaataaa-aaatcatcctGTGTTGTAAGGATGGTTTCCTTAATTGAACAGGTGTGTG----------GTGCCTTTACCTCTGGAACAAATATTTGGAGCAGATTTTCA--TTCTACCTAGTTAGTAGTGTTGGATCT-----TTactcttcagtgtt--tttcttttaatttcttttttttatttaaagaga

a score=7852
s chr3            92320908 138 + 160039680 GAAGAAAGAGAAGCCAAAGAGAAGAGCACCTGGGTACAGTTGAAGTGCCAGCCTGCACCACCTATAGAACCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCC
s HiC_scaffold_1 174026404 138 + 233722169 gaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCCCTTTATATTTCTTGTC

a score=22690
s chr3           92325322 1646 + 160039680 CCAAGGCTATTAGCCCCCTCTATGAAGGGCGTATACTATTTCCCATAATTCACA--AAAAGCATAGTACATAATAGGCAGAAGATATGACCTGACCT-TCACACATGGTT-GTTAAAGAAGAATTCAAAATCACAGCTAAAA---TCCCTTTA-ATATTTTATTTCATCCTGTAGACAAATTATATTCCTACAAAACAGGAATAT--AAATGGGCCAGCACATCAATGAATATGAATAACCTGAAGCAGAACAAATAGAATGCATGAGTTAGGACACAACAGAATTATAACAAAACAAAACAACAAAAAA------AGAAATATTGACTTCGACAACAACAACAAAAGAACTTAGGA-AACCAGT----GAGATCT-----TACTGACACTGAAATGGGG-----------GAACACCCA--------CTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAATT-CTCAGTCAGTTCTG---------CTCACACTGGCCT-------GGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGCAGAC-TCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGT----TTTTGGGAGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGGTGGTT------------------------------------------------TAAAAGA---------GTTTATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCTC------AACTGTC-TTTTACTGTCCAACTT---CAG--ACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGAT-TTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTCCAAGTTTCAATCAATCTTGTCTGGATTA-ATTAACCCCT-------AACACTGTCATG-AAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAG----------GAGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACAT-GTTTCACCCTCCTTGTGGCTGCGATGATCCCT
s HiC_scaffold_1 95924630 1642 + 233722169 CCAAAGAACTTATTACCCTCTGTGAGTGGCAAGGGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGA---CCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCA--GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGAC---CTACAT-ACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAA-----------------GACATCAAACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCC----CAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTTTTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTCA-GAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGT--TTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATTTCATGTTTGTGAGATGGATGTTACTTCAGTGATGG----AAACTTAAGACTAGGCAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACAATTTGTGGT-TCCTTTCAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCT------------CAGGGGATAAACCTGACAGAGATTGA----GTGAGATGCTCAGGACTTTTGAACTTGTGACTGCCT----------------TTTGTGAGAAAAT-------GTTTTCCCCAAGAC------------------------------TGAGGAAGCAGGTTGATAAAGT-----------------------GCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGT--------AGCAATGTGCCTTGGTATTGcgagtttt------tcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGC------------CCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTcatgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCT

a score=20647
s chr3           92325665 1666 + 160039680 CCAGTGAGATCTTACTGACACTGAA----ATGGGGGAACACCCACTGAGTCACTA--------CACTCAGTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAATT------CTCAGTCAGT----------TCTGCTCACACTGGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGCAG-ACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGTTT--TTGGGA----GTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTT--TATTTGATAGGT---------------------------------------GGTTT----------AAAAGAGTTTATTTCTCTTTTATATGCATATTTT-GGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCTCAACTGTCTTTTACTGTCCAACTTCAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTT------GTGAAT-TCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGA-----TTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGT---------TGATGTTCCA-AGTTTCAATCAATCTTGTCTGGATTAAT---TAACCCCTAACACTGTCATGAAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCC---------------TTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACC-CAAGAGCAAGTGAGGGCTTCAGAA------GAATTCAGGAGAAGAGAAT--CCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACATGTTTCACCCTCCTTGTGGCTGCGATGATCCCTTACAGGGAAGGCATTTCACTGAAGTTGTCCTGCTTTTGTTGTCAAGGGGCTGTTGAGAATGATCTGTCCTCAGTGGT-TCCGTGTCCCAGATGCTTAGAGGGTAGAGCAACTTCTGTCTATTCTGTGCACTC-AGAGGATGTTTTTCAAAACTGTCAGT----TATCTT-------GTTTGT---------ATTGTCACTGAGGTTTCATTTCCTGAATAAAGCACA--ATCTGATTAATGGTATTCATATGTCCCTTTTTC---TAAAACACTCTATTTTCTTCCTGATATGCTTATGTTCCTTTATTTTTA---TTCATTGATCCCAAGGTTACTCTCCTGCAATCAAGGTATGACTGATATTGGATCATATCAAATATTACAC----AGTGTTT
s HiC_scaffold_1 95832954 1649 + 233722169 CCAGTCATCATTAACTGAAACTGAATACTAAAGTGGTAGGGTCTCTGGGTCACCAGGATTTAACATTGGCTGGAGATGATg-----aaacaatgtattttttatttttaggggtCCTGTCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAAACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCAGTTCC-GATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGTTGGCCTTCTTAG------GTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTAAGCG----AAACTTA-TGACTGATACAATCATACAATATATTGGTTTGCATTGGCTTTATTGGTAGATAGGTTGATGTTcacatggaaaaacaaagtgccaAGGAAAGTTGGAtttgaattaaagaaaacaaaattatttttctttc-----caaattttcaGTGTCACTATAAAGATATCTTGTCTTAGCAGTTGGGAAATCCTTTAGTTCTTC------CTTCTAATGG--GACTTCATAACACTT-------------------TGAA----------------------------------------ACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTT--------AGTAGAGATACTTTCTT---TGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCTC-----TA--GGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAAT---GTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTACTTTCAGATCCTGAGATACAAGAA-AATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCC------ACAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaataggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATATCCTGC--AATCCTTTAC--------CCTGTAATCTGCCTGGGAAGGTTCCT---------GGCAGCTCAACAA-----TCCTTTGTATACTGTAA---------------------GTTCACAGCTGTGTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTCTCCTTTGT---CTCTAGCAGATGTTGTCCTGCA-TGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTT-AATAAAGTACATTTTTTGTTGAACGGt-----tgtgtatctttttcttttaaaac------tcttattagaaatatg-taatttttgttgATTTCCATATTTGCTTAATTTCTAGTTTAGATTCCTCCTGT---GGTTTGA---ATTTGGGTTCATATCAAAAGTCGTACCCAAAGTATTT

a score=21196
s chr3           92325685 1283 + 160039680 CTGAAATGGGGGAACACCCACTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAAT-TCTCAGTCAG---------------TTCTGCTCACACT-GGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGC-AGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTC---CGAGTGCTGTAGTGAGTTTTTGGGAGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGGTGGTT------------------------------------------------TAAAAGA---------GTTTATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCTCAACTGTCTTT-------TACTGTCCAACTTCAGACAATCTGTTGGG----ATGATA----CAAGCAATGAAGAGGACAGAAACTGGTTTTGTGAT-TTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTCCAAGTTTCAATCAATCTTGTCTGGATTA-ATTAACCCCT-------AACACTGTCATG-AAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAGG----------AGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACAT-GTTTCACCCTCCTTGTGGCTGCGATGATCCCT
s HiC_scaffold_1 95891227 1257 + 233722169 CTGAGATGGA--------CTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTTTTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAG----AAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACAATTTGGGGTTCCTTTCGAAGGG--GTATGACTTAATTTGC-------TGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTC-------TCTAATGGGCGCAGTGATGTTCTCAGGGGATAATGATGAGAGGGATTGA----GTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTGAGAAAAT-------GTTTTCCCCAAGAC------------------------------TGAGGAAGCAGGTTGATAAAGT-----------------------GCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGT--------AGCAATGTGCCTTGGTATTGcgagtttt------tcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCA-AGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCT

a score=20027
s chr3           92325705 1546 + 160039680 CTGAGTCACTA-CACTCAGT--AGTGATGAAGTCCAGAAAGAGGGCATTTCCCAT-CTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAATT-CTCAGTCAGTTCTG---------CTCACACTGGCCT-------GGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGC-AGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGT----TTTTGGGAGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGG------------------------------------------------TGGTTTAAAAGA---------GTTTATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCT---------CAACTGTCTTTTACTGTCCAACTT---CAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGAT-TTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTCCAAGTTTCAATCAATCTTGTCTGGATTA-ATTAACCCCT-------AACACTGTCATG-AAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAG----------GAGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACATGTTTCACCCTCCTTGTGGCTGCGATGATCCCTTACAGGGAAGGCATTTCACTGAAGTTGTCCTGCTTTTGTTGTCAAGGGGCTGTTGAGAATGATCTGTCCTCAGTGGTTCCGTGTCCCAGATGCTTAGAGGGTAGAGCAACTTCTGTCTATTCTGTG---CACTCAGAGGATGTTTTTCAAAACTGTCAGTTATCTTGTTTGTATTGTCACTGAGGTTTCATTTCCTGAATAAAGCACAATCTGATTAATG---GTATTCATATGTCCCTTTTTCTAAAACACTCTATTTTCTTCCTGATATGCTTATGTTCCTTTATTT
s HiC_scaffold_1 95911569 1398 + 233722169 CTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGT--TTTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGT--TTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACTTTATGTTTGTGGGATGAATGTTACTTCAGTGATGG----AAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACA-ATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCT--CCAATGTGCCCAGTAAAGTTCT----------CAAGGGATAAAGATGACAGGGATTGA----GTGAGATGCTCAGGACTTTTGAACTTGTGACTGCC----------------CTTTGTGAGAAAAT-------GTTTTCCCCAAGAC------------------------------TGAGGAAGCAGGTTGATAAAGT-----------------------GCAAGAGAGAATCCATAAAGTCTTAAGG-AGGAGT-----AGCAATG----TGCCTtgg--------------tattgcatgtttt------tcttctttttagtacATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGG------TCATAA---------------------CTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTcatgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTC-------TTCACCC------------------------------------TTTCAC-------------------------------------ATATAATCTG-CCTCCATGGTTTCTTGTCTC-----CCTACAGGGG-----AACTCTCATCTCTCCCTTGGTCCCGTCCCATAATGTCTTCTGAGCCTCTCTGTCACCTGG--GAAATTATAACTAAACTTTCACATCCTGAATAAAGTATTATATTTTTTGTGAGAGgagaaatattttctgtcttctaaagTCACCTGTATTAACAATAccgta-ttattttgctttattt

a score=20484
s chr3           92325705 1256 + 160039680 CTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAATTCTCAGTC----------------AGTTCTGCTCACACT-GGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGC-AGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTCCGAGT--GCTGTAGTGAGTTTTTGGGAGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGGTGGTT------------------------------------------------TAAAAGAGTT-------TATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAG-CAGGTATTAGAGCCTGAGATTCCTCAA--------------CTGTCTTTTACTGT--CCAACTTCAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTCCAAGTTTCAATCAATCTTGTC--TGGATTAATTAACCCCTA---ACACTGTCATG-AAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAG---------CCT------TGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAG----------GAGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACATGTTTCACCCTCCTTGTGGCTGCGAT
s HiC_scaffold_1 95898060 1253 + 233722169 CTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACTGATAG----AAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCACACAATTTGGGGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattctttatgtgtagCTATTGCTCTGTTCTCTAATGTGCCCAGT----GACGTTCTCAGGGGATAATG------ATGAGAGGGATTGAG--------TGAGATGCT-CAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTGAGAAAAT-------GTTTTCCCCAAGAC------------------------------TGAGGAAGCAGGTTGATAAAGT-----------------------GCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGT--------AGCAATGTGCCTTGGTATAGCgagtttctct---tcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTCATGAAAAGGGAAGGAACTCTGGCTCACCCCCTT-TATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGAC-------TGTTTTA---TCCTTTCAGCTGTAAT

a score=21390
s chr3           92325705 1241 + 160039680 CTGAGTCACTA-CACTCA--GTAGTGATGAAGTCCAGAAAGAGGGCATTTCCCATCTT-TAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAAT-TCTCAGTCAG---------------TTCTGCTCACACT-GGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGC-AGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTC---CGAGTGCTGTAGTGAGTTTTTGGGAGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGGTGGTT------------------------------------------------TAAAAGA---------GTTTATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCTCAA----------------------CTGTCTTTTACTGT--CCAACTTCAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTCCAAGTTTCAATCAATCTTGTC--TGGATTAATTAACCCCTA---ACACTGTCATG-AAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAG----------GAGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACATGTTTCACCCT
s HiC_scaffold_1 95904789 1227 + 233722169 CTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGG----AAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACAA--TTTGGGGTTCCTTTCAAAGGGGTATGACTTA--ATGTGCTG-----TGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTGCCCAGT----GACGTTCTCAGGGGATAATG------ATGAGAGGGATTGAG--------TGAGATGCT-CAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTGAGAAAAT-------GTTTTCCCCAAGAC------------------------------TGAGGAAGCAGGTTGATAAAGT-----------------------GCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGT--------AGCAATGTGCCTTGGTATTGCgagtttctct---tcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTcatgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT

a score=21069
s chr3           92325727 1241 + 160039680 GATGAAGTCCAGAAAGAGGGCATTTCCCATCTTTAGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAAT-TCTCAGTCAG---------------TTCTGCTCACACT-GGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGC-AGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTC---CGAGTGCTGTAGTGAGTTTTTGGGAGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCA--TAAGTTTAG--CAATGGATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGG------------------------------------------------TGGTTTAAAAGA---------GTTTATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCTCAACTGT--CTTTTACTGTCCAACTTCAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGAT-TTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTCCAAGTTTCAATCAATCTTGTCTGGATTAATTAACCCCT-------AACACTGTCATG-AAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAGG----------AGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACAT-GTTTCACCCTCCTTGTGGCTGCGATGATCCCT
s HiC_scaffold_1 95930584 1218 + 233722169 GATGGGATTCTGGAGCAGGTTTTTTATTA-CTTGCAAGTACCTGTC-AGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATA--------TTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACA-ATTTGGGGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTGCCCAGTGAAGTT--CTCAGGGGATAATCATGACAGGGATTGA----GTGAGATGCTCAGGACTTTTGAACTTGTGACTGCAT----------------TTTGTGAGAAAAT-------GTTTTCCCCAAGAC------------------------------TGAGGAAGCAGGTTCATAAAGT-----------------------GCAAGAGAAAATCCAAAAAGTCTTAAGAAGGGAATACTGTAAGCATGAGT--------AGAAATGTGCCTTGGTATT----GTGTAAGTTCTTCTTTTCAGTAC--ATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCT

a score=4034
s chr3           92326626 89 + 160039680 AGCCCTGCCAACCTCC------TCCTGTG---TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCA
s HiC_scaffold_1 95899018 98 + 233722169 AGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA

a score=4573
s chr3           92326626 129 + 160039680 AGCCCTGCCAACCTCC------TCCTGTG---TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCT
s HiC_scaffold_1 95833962 132 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAA------TGTCCTATGCAAACTCCCCTGCCCT

a score=5509
s chr3           92326649 128 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892203 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5435
s chr3           92326649 128 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931520 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGCCC---TCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5688
s chr3           92326649 128 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925990 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAACAGCAATGCCC---TCCTGTGC---ATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=5548
s chr3           92326649 128 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905754 122 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGCCC---TCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6131
s chr3           92326649 128 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCC---------TGAGCCATGTCCTCCT------------CCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899023 149 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6090
s chr3           92326649 128 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCC---------ATGTC---------CTCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCC

a score=3791
s chr3           92326683 102 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95892183  90 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGC------------CCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=3800
s chr3           92326683 102 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95925970  90 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGC------------CCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC

a score=4218
s chr3           92326683 103 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCC---------------TTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACC
s HiC_scaffold_1 95833947 118 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=3800
s chr3           92326683 102 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95931500  90 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGC------------CCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4500
s chr3           92326683 102 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCC---------------TTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95899003 117 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=3996
s chr3           92326683 102 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95905734  90 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCA------------GAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=7053
s chr3           92338679 678 + 160039680 GGGTTGTCATATATGAGGCTAAAACAACAGTTAAAA------CTTTTAATACTTTCTTTCCTTTAGTCTATAGGCCAATTATCCTTAGAAAGCAGGAATATAAGTGAGTCAGTGCACCACAGAATATTAATAAGCTGAAGTAGAATAAATAAAACACACAATTTAGGACATAAGAAAATTGTAACAGAGGAAAAAAAGCATTTGCTATAATCACAAAA--------GATTACATAGGCAACCAGTGAGA-------------TCTCACC---------GAAACTTAAAACATTGAGTGCTCA--------CTGAGTCACAGGT-CTCAACG--GTGATGATGTCCAGGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATTTTGGGCCCTGCCCATTATCAGTCAGATTT---GTTCCTACTAGGCTGGCCAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGCAGAC-TCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTG-TACATGTTGTTCTTC-CTATGTGCTGTA--------GTGACATTTGAGGGAATATGTGTCTTGAGTTCAGTTTTGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCAGTGAATACAATAGTCAAGAGTGATAAGTTACTTTTCCTT
s HiC_scaffold_1 95924733 707 + 233722169 GGTTTGTTAGAGATGGCACTAGAAC--CAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGC----AGACCTACATACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAACAGTTTTGAGATTCAAAGA--TGTCAAAAAGTAGGAGGGG-----ATTATCGTCCCAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACA--GACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTG--AAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCT-CAGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGAC-TTCAAGGTGGTATGCACATT--------TCATGTTTGTGAGATGGATGTTA---CTTCAGT-GATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGagcttcatttcctt

a score=7778
s chr3           92338927 435 + 160039680 TAAAACATTGAGTGCTCA--------CTGAGTCACAGGT-CTCAACG--GTGATGATGTCCAGGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATTTTGGGCCCTGCCCATTATCAGTCAGATTTG----TTCCTACTAGGCTGGCCAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTG-TACATGTTGTTCTTC-CTATGTGCTGTAGTGACATTTGAGGGAATATGTGTCTTGAGTTCAGTTT-TGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCAGTGAATACAATAGTCAAGAGTGATAAGTTACTTTTCCTTACATT
s HiC_scaffold_1 95904765 444 + 233722169 TGAAACA--GACTGCTCAGGTGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGC---TTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTG-AATATAATCTGAGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTA---CTTCAGT-GATGGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTT

a score=7964
s chr3           92338927 435 + 160039680 TAAAACATTGAGTGCTCA--------CTGAGTCACAGGT-CTCAACG--GTGATGATGTCCAGGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATTTTGGGCCCTGCCCATTATCAGTCAGATTTG-TTCCTACTAGGCTGGCCAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTG-TACATGTTGTTCTTCCTATGTGCTGTAGTGACATTTGAGGGAATATGTGTCTTGAGTTCAGTTT-TGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCAGTGAATACAATAGTCAAGAGTGATAAGTTACTTTTCCTTACATT
s HiC_scaffold_1 95898036 442 + 233722169 TGAAACA--GACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTG-AATATAATCTGAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACT----GATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTT

a score=7423
s chr3           92338945 412 + 160039680 CTGAGTCACAGGT-CTCAA--CGGTGATGATGTCCAGGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATTTTGGGCCCTGCCCATTATCAGTCAGATTTG----------TTCCTACTAGGCTGGCCAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTG-TACATGTTGTTCTTC-CTATGTGCTGTAGTGACATTTGAGGGAATATGTGTCTTGAGTTCAGTTT-TGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCAGTGAATACAATAGTCAAGAGTGATAAGTTACTTTTCCTT
s HiC_scaffold_1 95911569 412 + 233722169 CTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTT--TTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCA---------AGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTG-AATATAATCTGAGACATCAAG-GTGGTGTGCACACTTTATGTTTGTGGGATGAATGTTA---CTTCAGT-GATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttcctt

a score=7281
s chr3           92338945 417 + 160039680 CTGAGTCACAGGT-CTCAACG--GTGATGATGTCCAGGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATTTTGGGCCCTGCCCATTATCAGTCAGATTTG----------TTCCTACTAGGCTGGCCAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTG-TACATGTTGTTCTTC-CTATGTGCTGTAGTGACATTTGAGGGAATATGTGTCTTGAGTTCAGTTT-TGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCAGTGAATACAATAGTCAAGAGTGATAAGTTACTTTTCCTTACATT
s HiC_scaffold_1 95891239 419 + 233722169 CTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCAT---------GGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTG-AATATAATCTGAGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACT----GATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTT

a score=15815
s chr3           92340058 610 + 160039680 TTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAAAATAATGTTGATGTTCAAAGAGACAAATGGACTTGAAGCTCCAGAGTTCCATCTATCTTCTCT---------GAATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACC--CATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCA-CCTTTCAC----------CCTCCAT-GTTCCTGTGATGTCCCCTAACAGGGAA
s HiC_scaffold_1 95912267 522 + 233722169 TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCA-TAAAGTCTTAAGGAGGAGT-----AGCAATGT---------------------GCCTtggtattgca------tgtttttcttctttttagtacATGAATTCCTTCTTC-TGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTG----------------GTCATAA-----------CTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTc-atgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTCACATATAATCTGCCTCCATGGTTTCT----TGTCTCCCTACAGGGGA

a score=18308
s chr3           92340058 589 + 160039680 TTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAAAATAATGTTGATGTTCAAAGAGACAAATGGACTTGAAGCTCCAGAGTTCCATCTATCTTC----TCTGAATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCA-CCTTTCACCCTCCATGTTCCT
s HiC_scaffold_1 95891939 533 + 233722169 TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGA--------ATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATTGc-gagtttttcttcttttcagtacATGAATTCCTTCTTC-TGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGG------TTAAAA---------------------CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTc-atgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT-TCTTCTCTTCAAAGTGTTTCATGAGCA-AGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCT

a score=18750
s chr3           92340058 589 + 160039680 TTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAAAATAATGTTGATGTTCAAAGAGACAAATGGACTTGAAGCTCCAGAGTTCCATCTATCTTCTC------TGAATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCA-CCTTTCACCCTCCATGTTCCT
s HiC_scaffold_1 95931257 533 + 233722169 TCCCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAAGGGA--------ATACTGT--AAGCATGAGTAGAAATGTGCCTTGGTATTGTGTAAGTTCT-----TCTTTTCAGTACATGAATTCCTTCTTC-TGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTc-atgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT-TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCT

a score=18187
s chr3           92340058 579 + 160039680 TTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAAAATAATGTTGATGTTCAAAGAGACAAATGGACTTGAAGCTCCAGAGTTCCATCTATCTTCTCTGAATTGATT---GTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACC--CATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTTTCACCCT
s HiC_scaffold_1 95905490 526 + 233722169 TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGA--------ATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATTGC-gagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTc-atgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT

a score=18164
s chr3           92340058 577 + 160039680 TTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAAAATAATGTTGATGTTCAAAGAGACAAATGGACTTGAAGCTCCAGAGTTCCATCTATCTTC----TCTGAATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCA-CCTTTCACC
s HiC_scaffold_1 95925726 522 + 233722169 TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGA--------ATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATTGc-gagtttttcttcttttcagtacATGAATTCCTTCTTC-TGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTc-atgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT-TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACC

a score=19484
s chr3           92340058 575 + 160039680 TTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAAAATAATGTTGATGTTCAAAGAGACAAATGGACTTGA---AGCTCCAGAGTTCCATCTATCTTCTCTGAATTGATT---GTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCA-CCTTTCA
s HiC_scaffold_1 95898759 546 + 233722169 TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGA--------ATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATAGC----gagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTC-ATGAAAAGGGAAGGAACTCTGGCTCACCCCCTT-TATGGCAGCACCT-TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTTTCA

a score=16909
s chr3           92340095 853 + 160039680 GGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAA---AATAATGTTGATGTTCAAAGAGACAAATG----GACTTGA-AGCTCCAGAGTTCCATCTATCTTCTCTG---AATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACC-TAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGG---ACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCC--ATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTTTCACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTGTCCTGCTTTTGGTGTCAAGGGGCTGCAGAGAATGATCTGTCCTCAGTTAT-TCAGTATCCCAGGTGCTCAGTGGGAACTATAGCTGCTATCTATCCTGTGCCCTCAGGAGATGTTGCCAAAAACTCTCAAT----CACCTTTG-----GTTTT--------GTGTTGTCAGCATGGTTTCATTTCCTGAATAAAGTACAATCTACATAATGACGTTCATGTGTTCCTTCCTTCTAAAACTTACACTAT-TATCTGTAACTCATGT--ATTTGCATTTTGGTTT
s HiC_scaffold_1 95833726 808 + 233722169 GGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTT----CTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATAT-ACTACTTTCAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAG------------TGTCCTGAGCCATGTCCACTTCC------ACAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaatagg------cTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCAT------------ATATCCTGCA------ATCCTTTA---CCCTGTAAT-----CTGCCTGGGAAGG---TTCCTGGCAGCTCAACAATCCTTTGTAT------ACTGTAA----------GTTCACAGCTGTGTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTC--TCCTTTGTCTCTAGCAGATGTTGTCCTGCA-TGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTT-AATAAAGTACATTTTTTGTTG-AACGGttgtgtatctttttcttttaaaactcttattagaaatatgtaatttttgttgATTTCCATATTTGCTT

a score=4201
s chr3           92340272 122 + 160039680 AGTGCAAGCAGCCTTGCCAGCCTCCA------CCTGTG---TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCT
s HiC_scaffold_1 95899009 125 + 233722169 AGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCT

a score=4309
s chr3           92340281 102 + 160039680 AGCCTTGCCAGCCTCCA------CCTGTG---TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCC------ACCAAAGTGCCCTGAGC
s HiC_scaffold_1 95833962 117 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGC

a score=4489
s chr3           92340304 155 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925990 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAACAGC---------------------AATGCCC---------TCCTGTGC---ATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=4471
s chr3           92340304 155 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905754 122 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGC---------------------AATGCCC---------TCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4496
s chr3           92340304 155 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892203 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCT-----GTGC----------ATCCTG---------CCCCACCC---TGCCAGCAGAAGTACCCACC

a score=4489
s chr3           92340304 155 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931520 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGC---------------------AATGCCC---------TCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6647
s chr3           92340304 155 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899023 149 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=7382
s chr3           92340304 155 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAA---CCACAA---TGTCCTATGCAAACTCCCCTGCCC---TGCCAACAGAAGTGCCCCCC

a score=5254
s chr3           92340338 129 + 160039680 CTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAAC
s HiC_scaffold_1 95899003 117 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4942
s chr3           92340338 97 + 160039680 CTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCC
s HiC_scaffold_1 95925970 85 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGC------------CCTGAGCCATGCCCACCTCC

a score=5046
s chr3           92340338 97 + 160039680 CTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCC
s HiC_scaffold_1 95905734 85 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC

a score=5064
s chr3           92340338 97 + 160039680 CTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCC
s HiC_scaffold_1 95931500 85 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC

a score=5775
s chr3           92340338 130 + 160039680 CTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACC
s HiC_scaffold_1 95833947 118 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAG------------TGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=3634
s chr3           92340367 68 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCC
s HiC_scaffold_1 95912497 56 + 233722169 CCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC

a score=3915
s chr3           92340367 115 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCC
s HiC_scaffold_1 95833949 103 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTC

a score=4067
s chr3           92340367 100 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAAC
s HiC_scaffold_1 95892185  88 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCG------------GAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4076
s chr3           92340367 100 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAAC
s HiC_scaffold_1 95925972  88 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCG------------GAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC

a score=4076
s chr3           92340367 100 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAAC
s HiC_scaffold_1 95931502  88 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCG------------GAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4507
s chr3           92340367 132 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCT---------CCACCCTGCCAGCAGAAGTGCCCACCT
s HiC_scaffold_1 95899005 129 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCA------------GAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCT

a score=4320
s chr3           92340367 100 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAAC
s HiC_scaffold_1 95905736  88 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCA------------GAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=23551
s chr3           92351703 1536 + 160039680 GGTTTGTCAAATAATAAGTTGAAACAACAGTG---AAAATCATT----AATATTCTTTCTCTCAGCCCATAGGCAAATTATACCTAG-AAAAATGGAATAT--AAATAGGCCAAGGCACCACAGAATATTAATAAGCTTAAGCA-AAACAA---ATAAAACACTTAAT-------------TTAGGATATAAGAGGGGG----------AAAAAAGCATTTGTTACAATCACAGAA-------GAGAACAAAGTGAGATCTCACTGAAACT---------------------TAAAACAG-----TGAG-TGCTCACTGAGTCACAGGT-CTCAA--CAGTGGTGATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACTGGC-CAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGT--CATGTTGTTCTTC-CTATGTGCTGTAGTCAATTTTGAGGTAGTGTGTGTCTTGAGTTCAGTTT-TGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCAGAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGT--------------------------TGTA-------------------------------GAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGAGA-ACCTGAGACTTTCCTG---AGCT-TTCCTTTACTGTCCAACCCCAGACAACCTGCTGTAATGATA----CATGTAATGTAGAGGACAGAAATGATGTGAT-TTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAGCCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAGTTCTATCTATCTTCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGT-----GAATCCTCTCTA-CCTGTCA-CTCCCATTTGCCTGTAATGACCTCTTT
s HiC_scaffold_1 95890945 1541 + 233722169 GGTTTTTTAGAGAAGGAACTAGAAC--CAGTGCACAGAGTCATTTTagatttctccttttctctaccAG------AACTATGTACAGTGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACATCAAACAGTTGTTAAATACAAAGATGTCAAAAGATAGGAGGGGATTATTGTCCTAAGAAAG--------------ACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCT-GAGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACT----GATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACAATTTGGGGTTCCTTTCGAAGGGGTATG-ACTTAATTTGCTGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAAT-----------GGGCGCAGTGATGTTCTCAGGGGATAATGATGAGAGGGATTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCT------------------------------------------TTTGTGAGAAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA--------AGGGAATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATTGcg-agtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCTCT

a score=23906
s chr3           92351779 1460 + 160039680 CTAGAAAAATGGAATAT--AAATAGGCCAAGGCACCACAGAATATTAATAAGCTTAAGCAAAACAAATAAAACACTTAATTTAGGATATAAGAGGGGGAAAAAAGCAT----------TTGTTACAATCACAGAAGAGAACAAAGTGAGATCTCACTGAAA----CT----------------------------TAAAACAGTGAGTGCTCA--------CTGAGTCACAGGTCTCAACAGTGGTGATG---TCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACT-GGCCAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGCAGAC-TCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGT--CATGTTGTTCTTC-CTATGTGCTGTAGTCAAT-------TTTGAGGTAGTGTGTGTCTTGAGTTCAGTTTTGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCA--GAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGT--------------------------TGTA-------------------------------GAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGAGAACCTGAGACT-TTCCTG---AGCT-TTCCTTTACTGTCCAAC---CCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGAT-TTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAGCCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAGTTCTATCTATCTTCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGTG------AATCCTCTCTA-CCTGTCA-CTCCCATTTGCCTGTAATGACCTCTTT
s HiC_scaffold_1 95924809 1465 + 233722169 CTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAG--ACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTC-AGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATT--------TCATGTTTGTGAGATGGATGTTACTT------CAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACAATTTGTGGTTCCTTTCAAAGGGGTATG-ACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAG-TGACGTTCTCAGGGGATAAACCT---------GACAGAGATTGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCCT------------------------------------------TTTGTGAGAAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA--------AGGGAATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATTGcg-agtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGC------------CCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTc-atgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCTCT

a score=21549
s chr3           92351792 1415 + 160039680 ATATAAATAGGCCAAGGCACCACAGAATATTAATAAGCTTAAGCAAAACAAATAAAACACTTAATTTAGGATATAAGAGGGGGAAAAAAGCATTTG----TTACAATCACAGAA----------------GAGAACAAAGTGAGATCTCACTGAAACT---------------------TAAAACAGTGAGTGCTCA--------CTGAGTCACAGGT-CTCAA--CAGTGGTGATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTC-GACTGGCCAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGT--CATGTTGTTCTTC-CTATGTGCTGTAGTCAATTT-------TGAGGTAGTGTGTGTCTTGAGTTCAGTTTTGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCA--GAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGT--------------------------TGTA-------------------------------GAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGAGA-ACCTGAGACTTTCCTG---AGCT-TTCCTTTACTGTCCAAC---CCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGAT-TTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAGCCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAGTTCTATCTATCTTCTC------TGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGTG------AATCCTCTCTACC
s HiC_scaffold_1 95911366 1375 + 233722169 ATGAAAATGGACTTAAGTACCATAATGTAGCCATCACTTTAAGCACAACAAAGACATCAAACGGTCATGAGAATCAAAGATGTCAAAAAGTAGGAGGGCATTACTGTCCCAAGAAAGATAGAGATCCTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAG--ACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTT--TTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACT--------TTATGTTTGTGGGATGAATGTTACTT------CAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTCAAAGGGGTATG-ACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTGCCCAGTAAAGTT----------CTCAAGGGATAAAGATGACAGGGATTGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCC------------------------------------------CTTTGTGAGAAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAG-TCTTAAGGAGGAGT-----AGCAATGT---------------------GCCTtggtattgcatgtttttct---tctttttagtacATGAATTCCTT-CTTCTGAACATTGCT---GTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTc-atgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACC

a score=21394
s chr3           92351792 1447 + 160039680 ATATAAATAGGCCAAGGCACCACAGAATATTAATAAGCTTAAGCAAAACAAATAAAACACTTAATTTAGGATATAAGAGGGGGAAAAAAGCATTTG----TTACAATCACAGAAGAGAACAAAGT-----GAGATCTCACTGAAA----CTTAAAAC--------------------AGTGA--------------GTGCTCACTGAGTCACAGGTC-TCAA--CAGTGG-TGATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACTGGC-CAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGT--CATGTTGTTCTTC-CTATGTGCTGTAGTCAATTTTGAGGTAGTGTGTGTCTTGAGTTCAGTTT-TGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCA--GAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGT--------------------------TGTA-------------------------------GAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGAGAACCTGAGACT-TTCCTGAG-----------CTTTCCTTTACTGTCCAACCCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGAT-TTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAGCCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATA-GTTCTATCTATCTTCTC------TGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGT------GAATCCTCTCTA-CCTGTCA-CTCCCATTTGCCTGTAATGACCTCTTT
s HiC_scaffold_1 95930355 1449 + 233722169 ATGAAAATGGACTTAAGTACCAAAATGTAGCCATCAATTTAAGCACAATAAAGACATCAAACAGTCTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTGAGAACCTGTTGGAAAAACCTTCAAATTCCCACACAACCATCAGGTAAATGAAACAGACTGCTCCGGTGGACTCTGATTCACAAGCAGTTAATGCAGTGGATGGGATTCTGGAGCAGGTTTTTTATTACTT-GCA-AGTACCTGTCA-GCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCT-GAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTT------CAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTAAAAGGGGTATG-ACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTGC----CCAGTGAAGTT----------CTCAGGGGATAATCATGACAGGGATTGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCAT------------------------------------------TTTGTGAGAAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGA--------AGGGAATACTGTAAGCATGAGTAGAAATGTGCC---TTGGTATTGTGTAAGTTCT-----TCTTTTCAGTACATGAATTCCTT-CTTCTGAACATTGCT---GTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCTCT

a score=25812
s chr3           92351873 1639 + 160039680 GGAAAAAAGCATTT--GTTACAATCACAGAAGAGAACAAA----------GTGAGATCTCACTGAAACTTAAAAC---AGTGA-GTGCTCACTGAGTCAC-AGGTCTCAACAGTGGT--GATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACTGGCCAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGCAG-ACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGTCATGTTGTTCTTCCTATGTGCTGTAGTCAATTTTGAGGTAGTGTGTGTCTTGAGTTCAGTTT-TGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCAGAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGTTGTAGAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGA-----------GAACCTGAGACTTTCCTGAGCTTTCC-----TTTACTGTCCAACCCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAA-------------------TGATGTGATTTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTT-GTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAG--CCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGA---AATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATA-GTTCTATCTATCTTCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCC---------------TTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACC-CAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGTGAATCCTCTCTACCTGTCACTCCCATTTGCCTGTAATGACCTCTTTTAGGGAAGGCATTTTCCTTAGGTTGTCCTGCCATTTCTCTCATACAGGCTGCTGATTATATGTTCTCAAGTTGTTCAGTGTCCCAAATGCTCAGAAAGAATAACACCTGCTGTCTATCCTGTGCACCCAGAAGATGTTTTCCAAAACTGTCAAT--------------------------TGTTGTGTTGTCATTGTTGTTTCATTTCCTGAATAAAGCACA--ATCTGCTTAATGGTATTCATGTGTCCATTTTTTTT----------TCTGAAATGTA----CTGTGTTGCCTTCCTGATATGCTCTTTTTTT
s HiC_scaffold_1 95832907 1634 + 233722169 GGAAGACAGCATTTCAGTGACAGTTACAGAATCCAACCAATTATCCGCCAGTCATCATTAACTGAAACTGAATACTAAAGTGGTAGGGTCTCTGGGTCACCAGGATTTAACATTGGCTGGAGATGATgaaacaatgtattttttatttt-taggggtCCTGTCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAAACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCAGTTCCGAT-CTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTC-TGTTGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTAAGCG-----AAACTTATGACTGATACAATCA-----TACAATATATTGGTTTGCATTGGCTTT----ATTGGTAGATAGGTTGATGTT-------cacatg------------------gaaaaacaaagtgccaAGGAAAGTTGGAtttgaattaaagaaaacaaaattattttt--ctttccaaattttcaGTGTC----------------ACTATAAAGATATCT-TGTCTTAGCAGTTGGGAAATCCTTTAGTTCTTCCTTCTAATGGGACTTCATAACACTTTGAAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTA-GAGATACTTTCTTTGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCT-------CTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATAT-ACTACTTTCAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCC------ACAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaata---ggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATAT------------CCTGCAA--TCCTTTACCCTGTAA-----TCTGCCTGGGAAGG----TTCCT--GGCAGCTCAACAATCCTTTGTATAC-----------TGTAAGTTCACAGCTGTGTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTC--TCCTTTGTCTCTAGCAGATGTTGTCCTGCA-TGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTT-AATAAAGTACATTTTTTGTTGAACGG---ttgtgtatctttttcttttaaaactcttattagaaatatgtaatttttgttgATTTCCATATTTGCTTAATTTCT

a score=22417
s chr3           92351930 1262 + 160039680 TAAAACAGTGAGTGCTCA--------CTGAGTCACAGGT-CTCAA--CAGTGGTGATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACTGGC-CAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGT--CATGTTGTTCTTCCTATGTGCTGTAGTCAATTTTGAGGTAGTGTGTGTCTTGAGTTCAGTTT-TGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCAGAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGT--------------------------TGTA-------------------------------GAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAG-GCTATGTACCTAAGTAGGTATGAGA-ACCTGAGACTTTCCTG---AGCT-TTCCTTTACTGTCCAAC---CCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGATTTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAGCCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAGTTCTATCTATCTTCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAG---------CCT------TGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGG
s HiC_scaffold_1 95898036 1242 + 233722169 TGAAACAG--ACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTGAATATAATCT-GAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACT----GATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCACACAATTTGGGGT-TACTATCAAAGCGGTATG-ACTTAATCTGCTGTGAGATgcttcaattctttatgtgtagCTATTGCTCTGTTCTCTAATGTGCCCAG-TGACGTTCTCAGGGGATA---ATGATG-AGAGGGATTGAGTGAGATG----CTCAGGACCTTTGAACTTGTGACTGCCT------------------------------------------TTTGTGAGAAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA--------AGGGAATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATAGCg-agtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTC-ATGAAAAGGGAAGGAACTCTGGCTCACCCCCTT-TATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAG

a score=23187
s chr3           92351930 1262 + 160039680 TAAAACAGTGAGTGCTCA--------CTGAGTCACAGGT-CTCAA--CAGTGGTGATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACTGGC-CAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGT--CATGTTGTTCTTC-CTATGTGCTGTAGTCAATTTTGAGGTAGTGTGTGTCTTGAGTTCAGTTT-TGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCA--GAAAATTAGCAGTGGATACAATAGCCAATTGTGATAAGTGGCTTTTTGTTACATTTGGTAAGT--------------------------TGTA-------------------------------GAACAGAGGATATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGAGA-ACCTGAGACTTTCCTG---AGCT-TTCCTTTACTGTCCAAC---CCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGATTTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTCTGAAACACAGTAGCCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAGTTCTATCTATCTTCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGG
s HiC_scaffold_1 95904765 1221 + 233722169 TGAAACAG--ACTGCTCAGGTGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCT-GAGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTT------CAGTGATGGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACAATTTGGGGTTCCTTTCAAAGGGGTATG-ACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTGCCCAG-TGACGTTCTCAGGGGATA---ATGATG-AGAGGGATTGAGTGAGATG----CTCAGGACCTTTGAACTTGTGACTGCCT------------------------------------------TTTGTGAGAAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA--------AGGGAATATTGTAAGCAT---GAGTAGCAATGTGCCTTGGTATTGCg-agtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTc-atgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAG

a score=3874
s chr3           92352882  98 + 160039680 AGTGCAAGCAGCCTTGCCAGCCTCCA------CCTGTG---TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCA
s HiC_scaffold_1 95899009 107 + 233722169 AGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA

a score=4268
s chr3           92352891 140 + 160039680 AGCCTTGCCAGCCTCCA------CCTGTG---TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAG
s HiC_scaffold_1 95833962 143 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACA--ACCACAA----TGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAG

a score=4774
s chr3           92352914 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925990 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=4756
s chr3           92352914 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905754 122 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4887
s chr3           92352914 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892203 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4774
s chr3           92352914 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931520 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5751
s chr3           92352914 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC---------TGAGCCATGTCCTCCT------------CCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899023 149 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6138
s chr3           92352914 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCC---------ATGTC---------CTCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCC

a score=3567
s chr3           92352949 51 + 160039680 TCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC
s HiC_scaffold_1 95912496 51 + 233722169 TCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCC

a score=4371
s chr3           92352949 102 + 160039680 TCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCC---------------TTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACC
s HiC_scaffold_1 95833948 117 + 233722169 TCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=22500
s chr3           92364618 1877 + 160039680 GTAGTACCAAAGAGGGTCAAAATAAG------ACCCAAGGCAAGCATCCTCCCCTAAAGGGTGTATATTATTTTCTATGCTTCACAGAAAA-GAATCAAACCTAGGCAGGATACATGAACTCTCTCTCTCTCTGGGAAAAGACTTATCATAAATGATATTGAAATCACAACTATGGCCCCCA--------TTAATTTCCTTCTGTGCGCTAATAGATGAATTATACCTAAAAAACAG-GAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAAT-------AGAACAAAGAGGACACAAATTATAATTGATAAAAAA----------AATATTGTCCTTAAGGAAGAAAGAGA---------------------------------TCTTAGACAACCAATGTGACCTCACTGAAAC------------TGAATATTGAGTCACA-GTGCTCAA--CAATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAG--CCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGC-AGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAA----TTTGTGTCTTTATGGTCTTCCTAGGTGCTGCA----------GTCAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTA---CTA------ATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGTGGTTGAACA-------GAGATTATTAT-----------------------------------------------TTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGT-AGAAACCATGATTTTCCTGAAATATC-----CTTTACTGTCCAAC---CCCAG--ATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAAAAAGGGTAATGTTGATGCTAGAAAGAGAAATGAAGCTG---ATGCTCAATATCTGTCAATCT---TGTATGTGTTCATCATCTTTGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAG---------CCT------TGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTC--------ACCTACTTCCATATCTCAGTGATGACCTCTAATAAGTA-ATGAATTTGCCCGAGACTATAATCTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTCAGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCAGGG-TAGTTGTTACTGTTG--------------TTTTATTTCCCAAATAAAGTACTATGT-TTTAATGAT-------ATTCTTGTTTCCTTTCTTCAAAACTCA----TTTTATTACTGTTATGACAT
s HiC_scaffold_1 95897647 1887 + 233722169 GCAGTGCCAAGAGGTGGCTAAATGAACATATTACCCACAGTGAG-------------AGGAAGTTGTTTGTTACCTCTG-TTCACAGAAAAAGActcaaactca--caaggcagaCCGGCCCT---GCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCA--------GCCCACAGTGTCATTTTagatttctccttttctctaccAGA---ACTATGTACAGTGAAGAGAGAATATGAAAATGGCCTTAA-GTACCGTAATGTAGCCATCAATTTAAGTGACCAAGACATCAAAcagtttttaaattcaaagatGTCAAAAAGTAGGAGGGGATTATTGttca-aagaaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCA---TCAGGTAAATGAAACAGACTGCTCAGGTGGGTTCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGG---TTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGG---GGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATG----TTACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATT--------ATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCACACAATTT------GGGGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattctttatgtgtagCTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGAT------AATGATGAGA------------GGGATTGAGTG---AGATGCTCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTGA-------------------------GAAAATGTTT-----------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGTAGCAATGTGCCTTGGTATAGCgagtttctcttcttttcagtGCATGAATTCCTTCT-TCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACA-TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTCA-TGAAAAGGGAAGGAACTCTGGCTCACCCCCTT-TATGGCAGCACCT--TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTTTCAGCTGTAATCTACTTCCA------AGGATTCCTCTCTCCCAGCCAGAGGAACTCGC-----------ATCTCACCCTT---------------------GGTCCCATCCC----------ATGATGTCTTCTGAGCCTCCCTGAAACCTGGGCAGGGATTTCTATCACCTGtgaaattataaataacttttaCATGCTAAATAAAGTACTGTATGTTTTGTGATTGGagaaatac---ttttctttcttc-agacTCAGCTGTGTTAGCAATGCTATATCAT

a score=22571
s chr3           92364630 1880 + 160039680 AGGGTCAAAATAAGACCCAAGGCA---AGCATCCTCCCCTAAAGGGTGTATATTATTTTCTATGCTTCACAGAAAA-GAATCAAACCTAGGCAGGATACATGAACTCTCTCTCTCTCTGGGAAAAGACTTATCATAAATGATATTGAAATCACAACTATGGCCCCCATTAATTTCCTTCTGTGCGCTAATAGATGAATTATACCTAAAAAACAG-GAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAATAGAACAAAGAGGACACAAATTATAATTGATAAAAAAAA------------------------TATTGTCCTTAAGGAAGAAAGAGA-TCTTAGACAACCAATGTGA---------------CCTCAC--------------TGAAACTGAATATTGAG------------TCACA-GTGCTCAA--CAATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGC-AGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAA----TTTGTGTCTTTATGGTCTTCCTAGGTG---------------CTGCAGTCAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTA---CTA------ATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGTGGTTGAACA-------GAGATTATTAT-----------------------------------------------TTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGT-AGAAACCATGATTTTCCTGAAATATC-----CTTTACTGTCCAAC---CCCAG--ATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAAAAAGGGTAATGTTGATGCTAGAAAGAGAAATGAAGCTGA----TGCTCAATATCTGTCAATCTTGTATGTGTTCATCATCTT-TGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTCACCTACTTCCATATCTCAGTGATGACCTCTAATAAGTAATGAATTTGCCC---GAGACTATAATCTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTC----AGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCAGGG-TAGTTGTTACTGTTG--------------TTTTATTTCCCAAATAAAGTAC--TATGTT------TTAATGATATTCTTGTTTCCTTTCTTCAAAACTCATTTTATTACTGTTATGACATGATCATGTTCCTTTG
s HiC_scaffold_1 95890826 1873 + 233722169 AGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTG-TTCATAGAAAAAGActcaaactca--caaggcagacagGCCGTGCCT---TATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGA---ACTATGTACAGTGAAGAGAGAATATGAAAATGGACTTAA-GTACCATAATATAGCCATTGATTTAAGTA---CAAACAACACATCAA--ACAGTTGTTAAATACAAAGATGTCAAAAGATAGGAGGGGATTATTGTCCT-AAGAAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTTTTCACTACTT-TGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGG---GGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATG---TCCTCAGTTGTTTGTTGAATATAATCTG-AGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATG----TCACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATT--------ATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACAATTT------GGGGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGGGCGCAGTGATGTTCTCAGGGGAT------AATGATGAGA------------GGGATTGAGTG---AGATGCTCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTGA-------------------------GAAAATGTTT-----------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGTAGCAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACA-TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT--TCTTCTCTTCAAAGTGTTTCATGAGCA-AGAAGAGCCTTCTTCATCCTT----------------TCAGCTGT------------------AATCTGCCTCCAAGGATTCCTCTCTCTCAGC--CAGAGGAACTCT----------CATCTCTCCCTTGTTCCCATCCCATGATGTCTTCTGAGCCTCCCTGAAACATGGGCAGGGATTTCTATCACCTGtgaaattataaataacttttaCATGCTAAATAAAGTACAGTATGTTTTGTGATTGGagaaatac---ttttctttcttcagacTCAGCTGTGTTAGCAATGCCACATCATTTGGCTTATTTG

a score=22901
s chr3           92364630 1838 + 160039680 AGGGTCAAAATAAGACCCAAGGCA---AGCATCCTCCCCTAAAGGGTGTATATTATTTTCTATGCTTCACAGAAAA-GAATCAAACCTAGGCAGGATACATGAACTCTCTCTCTCTCTGGGAAAAGACTTATCATAAATGATATTGAAATCACAACTATGGCCCCCA--------TTAATTTCCTTCTGTGCGCTAATAGATGAATTATACCTAAAAAACAG-GAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAAT------------------------AGAACAAAGAGGACACAAATTA--------TAATTGATAAAAAAAATATTG----TCCTTAAGGA------AGAAAGA-------GATCTTAGACAACCAATGTGACCTCACTGAAAC------------TGAATATTGAGTCACA-GTGCTCAA--CAATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGC-AGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAA----TTTGTGTCTTTATGGTCTTCCTAGGTG---------------CTGCAGTCAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTA---CTA------ATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGTGGTTGAACA-------GAGATTATTAT-----------------------------------------------TTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGTAGAAACCAT--GATTTTCCTG---AAATATC-CTTTACTGTCCAAC---CCCAG--ATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAAAAAGGGTAATGTTGATGCTAGAAAGAGAAATGAAGCT---------GATGCTCAATATCTGTCAATCTTGTATGTGTTCATCATCTTTGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTA-TCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTT-CACCTACTTCCATATCTCAGTGATGACCTCTAATAAGTAATGAATTTGCCCGAGACTATAATCTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTC----AGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCAGG----------------GTAGTTGTTACTGTTGTTTTATTTCCCAAATAAAGTACTATG-----TTTTAATGATATTCTTGTTTCCTTTCTTCA
s HiC_scaffold_1 95904378 1835 + 233722169 AGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTGTGAGAGGAAGTTGTTTGTTACCTCTG-TTCATAGAAAAAGACTCAAACTCA--CAAGGC---TGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCA--------GCCCACAGTGTCATTTTagatttctccttttctctaccAGA---ACTATGTACAGTGAAGAGAGAATATGAAAATGGACTTAA-GTACCATAATGTAGCCATCAATGTAAGTGACCAAGACATCAAAcagtttttaaattcaaagatGTCAAAAAGTAGGAGGGGATTATTGTTCAAAGAAACATAGAGAGCCTTTGAGAACAGGTTGGAAAAACCTCCAAATTCCCACACAGCCA---TCAGGTAAATGAAACAGACTGCTCAGGTGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGG---GGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATG---TCCTCAGTTGTTTGTTGAATATAATCTG-AGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATG----TTACTTCAGTGATGGAAACTTAAGACTAGGTAACATGGTACAATATT--------ATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACAATTT------GGGGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGAT------AATGATGAGA------------GGGATTGAGTG---AGATGCTCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTGA-------------------------GAAAATGTTT-----------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGTAGCAATGTGCCTTGGTATTGCgagtttctcttcttttcagt---GCATGAATTCCTTCT-TCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACA-TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTca-tgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCT-------------------------------GTAATCTGCCTCCACG-GATTCCTCTCTCCCAGC--CAGAGGAACTCT----------CATCTCTCCCTTGTTCCCATCCCATGATGTTTTCTGAGCCTCTCTGTCACTTGGGCAGGGATTTCTATCACCTGAGAAATTATAACTAAACTTTCACATCCAGAATAAAGTACCGTAATTATTTGTGATaggagaaatattttgtttcttca

a score=22921
s chr3           92364657 1853 + 160039680 ATCCTCCCCTAAAGG---GTGTATATTATTTTCTATGCTTCACAGAAAA-GAATCAAACCTAGGCAGGATACATGAACTCTCTCTCTCTCTGGGAAAAGACTTATCATAAATGATATTGAAATCA--CAACTATGGCCCCCATTAATTTCCTTCTGTGCGCTAATAGATGAATTATACCTAAAAAACAGGAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAATAGAACAAAGAGGACACA----------AATTATAATTGATAAAAAAAA---------TATTGTCCTTAAGGAAGAAAGAGATC-TTAGACAACCAATGTGA---------------CCTCAC--------------TGAAAC------------TGAATATTGAGTCACA-GTGCTCAA--CAATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACT-TGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGC-AGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAATTTGTGTCTTTATGGTCTTCCTAGGTGCTGCAGTCAGTA--------------AGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTA---CTA------ATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGTGG--------------------------------------------TTGAAC--AGAGATT------ATTA--TTTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATAT-ACCTCAGCAGGTAGTAGAAACCATGATTTTCCTGAAATATCCTTTACTGTCCAACCCCAGATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAAAAAGGGTAATGTTGATGCTAGAAAGAGAAATGAAGCT-GATGCTCAATATCTGTCAATCTT---GTATGTGTTCATCATCTT-TGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTA-TCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTC--------ACCTACTTCCATATCTCAGTGATGACCTCTAATAAGTAATGAATTTGCCCGAGACTATAATCTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTCAGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCAGGGTAGTTGTTACTGTTGTTTTATTTCCCAAATAAAGTACTATGTTT----TAATGATATTCTTGTTTCCTTTCTTCAAAACTCATTTTATTACTGTTATGACATGATCATGTTCCTTTG
s HiC_scaffold_1 95911189 1770 + 233722169 ATCCTCTGTGAGAGGCAAGTGT---TTGTTTCCTCTG-TTCATAGAAAAAGACTCAAACTCA--CAGGGCA---GACCTGCCCTTCCCTGTCACATGTGGTTTAT--TAGATGGAACGAGAACCAGCCCACAGTGTCATC--TTAGATCTCTCCTTT-CTCTAGCAGAC---CTACATACTGTGAAGAGAGATTATGAAAATGGACTTAAGTACCATAATGTAGCCATCACTTTAAGCACAACAAAGACATCAAACGGTCATGAGAATCAAAGATGTCAAAAAGTAGGAGGGCATTACTGTCCC-AAGAAAGATAGAGATCCTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTTTTCCT--ATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCC----TATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACTTTATGTTTGTGGGATGAATG----TTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATT--------ATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTT------GGGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTG-CCCAGTAAAGTTCT-CAAGGGATAAAGATGACAGGGATTGAG---------TGAGATGCTCAGGACTTTTGAACTTGTGACTGCC----------------CTTTGTGA-------------------------GAAAATGTTT-----------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAGTCTTAAGGAGG----------------AGTAGCAATGTGCCTtggtattgcatgtttttcttctttttagtacATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACA-TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAA---------------------------GTGCCCTGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTca-tgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTCACATATAATCTGCCTCCATGGTT---TCTTGTCTCCCTACAGG--------------GGAACTCTCATCTCTCCCTT---------------------GGTCCCGTCCC----------ATAATGTCTTCTGAGCCTCTCTGTCACCT-----GGGAAATTATAACTAAACTTTCACATCCTGAATAAAGTATTATATTTTTTGTGAGAGgagaaatattttctgtcttctaaagTCAC-------CTGTATTAACAATAccgtattattttg

a score=23243
s chr3           92364668 1584 + 160039680 AAGGGTGTATATTATTTTCTATGCTTCACAGAAAA-GAATCAAACCTAGGCAGGATACATGAACTCTCTCTCTCTCTGGGAAAAGACTTATCATAAATGATATTGAAATCACAACTATGGCCCCCA--------TTAATTTCCTTCTGTGCGCTAATAGATGAATTATAC-CTAAAAAACAGGAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAATAGAACAAAGAGGACACAAA----------TTATAATTGATAAAAAAAA---------TATTGTCCTTAAGGAAGAAAGAGATC--TTAGACAACCAATGTGA---------------CCTCAC--------------TGAAAC------------TGAATATTGAGTCACA-GTGCTCAAC--AATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGCAGAC-TCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAATTTGTGTCTTTATGGTCTTCCTAGGTGCTGCAGTCAGTA-------------------AGTGTGCTGAGTTCAGTTTCAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTA---CTA------ATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGTGGTT-------------GAAC---------------------------------AGAGATT------ATTA--TTTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGTAGAAACCATGA--TTTTCCTG---AAATATC-CTTTACTGTCCAAC---CCCAGATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAAAAAGGGTAATGTTGATGCTAGAAAGAGAAATGAAGCTGA----TGCTCAATATCTGTCAATCTTGTATGTGTTCATCATCTT-TGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTA-CCCTTCACCT
s HiC_scaffold_1 95924660 1589 + 233722169 AAGGGT-----TTGTTTCCTCTG-TTCATAGAAAAAGACTCAAACTCA--CAGGGCA---GACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCA--------GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGAC---CTACATACTGTGAAGAGAGAATATGAAAA-TGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCC-AAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTTTTCCCTA-TTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAG---GGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTC-AGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATTTCATGTTTG----TGAGATGGATG----TTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATT--------ATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACAATTTGTGGTT-----CCTTTCAAAGGG-GTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAG------TGACG----TTCTCAGGGGATAAACCTGACAGAGATTGAG---------TGAGATGCTCAGGACTTTTGAACTTGTGACTGCCT----------------TTTGTGA-------------------------GAAAATGTTT-----------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATGAGTAGCAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACA-TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGC------------CCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTca-tgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT--TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACCT

a score=22875
s chr3           92364679 1836 + 160039680 TTATTTTCTATGCTTCACA-GAAAAGAATCAAACCTAGGCAGGATACATGAACTCTCTCTCTCTCTGGGAAAAGACTTATCATAAATGATATTGAAATCACAACTATGGCCCCCA--------TTAATTTCCTTCTGTGCGCTAATAGATGAATTATAC-CTAAAAAACAGGAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAATAGAACAAAGAGGACACAAA----------TTATAATTGATAAAAAAAA---------TATTGTCCTTAAGGAAGAAAGAGATC-TTAGACAACCAATGTGA---------------CCTCAC--------------TGAAAC------------TGAATATTGAGTCACA-GTGCTCAA--CAATG-ATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGC-CCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGC-AGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAATTTGTGTCTTTATGGTCTTCCTAGGT-----GCTGCA----------GTCAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTACT---------AATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGG------------------------------------------------TGGTTGAACAGAGATTATTA------TTTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGTAGAAACCAT-GATTTTCCTGAAATATCCTTTACTGTCCAACCCCAGATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAAAAAGGGTAATGTTGATGCTAGAAAGAGAAATGAAGCTGA----TGCTCAATATCTGTCAATCTTGTATGTGTTCATCATCTT-TGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTCACCTACTTCCATATCTCAGTGATGA----CCTCTAATAAGTAATGAATTTGCCCGAGACTATAATCTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTTGTTCCATTGTTCAGT---ATGACATTTTTCAAATCTCTCTGTCACTTGAGCAGGGTAGTTGTTACTGTTG-----------------TTTTATTTCCCAAATAAAGTACTATGTT-TTAATGATATT---CTTGTTTCCTTTCTTCAAAACTCATTT-TATTACTGTTATGACATGATCATG-TTCCTTTGGTCCT
s HiC_scaffold_1 95930197 1827 + 233722169 TTGTTTCCTCTG-TTCATACAAAAAGACTCAAACTCA--CAGGGCA---GACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGAACTAGAACCA--------GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTAGCAGAC---CTACATACTGTGAAGAGAGACTATGAAAATGGACTTAA-GTACCAAAATGTAGCCATCAATTTAAGCACAATAAAGACATCAAACAGTCTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCC-AAGAAAGATAGAGATCCTTTGAGAACCTGTTGGAAAAACCTTCAAATTCCCACACAACCATCAGGTAAATGAAACAGACTGCTCCGGTGGACTCTGATTCACAAGCAGTTAATGCAGTGGATGGGATTCTGGAGCAGG---TTTTTTATTACTTGCAAGTACCTGTCA-GCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGG---GGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATG----TTACTTCAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATT--------ATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTT------GGGGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTGCCCAGTGAAGTTC-------TCAGGGGATA-ATCATGACAGGGATTGAGTG---AGATGCTCAGGACTTTTGAACTTGTGACTGCAT----------------TTTGTGA-------------------------GAAAATGTTT-----------------------------------TCCCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAAGGGAATACTGTAAGCATGAGTAGAAATGTGCCTTGGTATTGTGTAAGTTCT-TCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACA-TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAG------------TGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT--TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTT----------------TCAGCTGTAATCTGCCTCCAA--------GGATTT-------------CTCTCTCCCATCCAGAGGAACTCTCA---------TCTCTCCCTTGGTCCCATCCCATGATGTCTCCTGAGCCTCTCTGTTACCTGGGCAGGG-ATTTCTATCTCCTGGGAGATTAAAACTAAACTTTCACATCCTGATTAAAGTACAGTATTATTTGTGAGAGCAGACATATTTTCTTCCTACTAAAGTCAGCTATATTAGCAATACCgtatcattttgctttatttggatCT

a score=23164
s chr3           92364974 1506 + 160039680 ACTGAAACTGAATATT-----------------GAGTCAC-AGTGCTCAACAATGAT--AATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATC-AGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGCAG-ACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAATTTGTGTCTTTAT-GGTCTTCCTAGGTGCTGCAGT-----------CAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTACTAATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGT-GGTTGA---------------ACAGAG----------------------ATTA------------TTATTTCTCTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGTAGAAACCATGATTTTCCTGAAATATCCTTTACTGTCCAACCCCAGATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTT-GTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCA--AGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAA-TACAAAAAGGG----------TAATGTTGATGCTAGAAAGAGAAATGAA-------GCTGATGCTCAATATCTGTCAATCTTGTATGTGTTCATC---ATCTTTGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCC---------------TTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACC-CAAGAGCAAGTGAAGTCTTCAGCAGTCTTC-AGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTA-TCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTCACCTACTTCCATATCTCAGTGATGACCTCTAATAAGTAATGAATTTGCCCGAGACTATAATCTTGCTGCTGTA--------AAGGGGCTCTAG-AGAATGGGT-----CTTGTTCCATTGTT-----CAGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCA-------------GGGTAGTTGTTACTGTTGTTTTATTTCCCAAATAAAGTACTATGTTTTAATG-ATATTCTTGTTTCCTTT--CTTCAAAACTCATTTTA
s HiC_scaffold_1 95832967 1531 + 233722169 ACTGAAACTGAATACTAAAGTGGTAGGGTCTCTGGGTCACCAGGATTTAACATTGGCTGGAGATGATgaaacaatgtattttttatttt-taggggtCCTGTCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAAACAGTGTTTAGACCTTTCATTTCCC--CTGGGTGG---GGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCA-GTTCCGATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGTTGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTAA---GC-GAAACTTATGACTGATACAATCATACAATATATTGGTTTGCATTGGCTTT--ATTGGTAGATAGGTTGATGTTcacatggaaaaacaaagtgccaAGGAAAGTTGGAtttgaattaaagaaaacaaaattatttttctttccaaa--------ttttcaGTGTCACTATAAAGATATCTTGTCTTAGCAG---------------------TTGGGAAATCCTTTA--GTTCTTCCTT-------CTAATGGGACT---------------------------------------------TCATAACACTTTGAAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTAGAGATACTTTCTTTGGGAAAAT--GGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCT-------CTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGATACAAGAAA--ATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCC------ACAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaataggcTCTTCTAT----TTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATATCCTGCAA----TCCTTTACCCTGTA---------ATCTGCCTGGGAAGGTTCCTGGCAGCTCAACAATCCTTTGTATACTGTAAGTTCACAGCTGTGTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTCTCCTTTGTCTCTAGCAG-ATGTTGTCCTGCATGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTT-AATAAAGTAC-ATTTTTTGTTGAACGGttgtgtatctttttcttttaaaactcttatta

a score=3857
s chr3           92365923 89 + 160039680 AACCCTGCCAGCCTCC------TCCTGTG---TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCA
s HiC_scaffold_1 95833962 98 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=4547
s chr3           92365946 128 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892203 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4434
s chr3           92365946 128 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931520 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4687
s chr3           92365946 128 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925990 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=4547
s chr3           92365946 128 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905754 122 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5542
s chr3           92365946 128 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC---------TGAGCCATGTCCCCCT------------CCCTCATTCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899023 149 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5536
s chr3           92365946 128 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC----------------TGAGCCATG-----TCCCCCTCCCTCATTCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCC---TGCCAACAGAAGTGCCCCCC

a score=3816
s chr3           92365987  96 + 160039680 GTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCC---------------TTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACC
s HiC_scaffold_1 95833954 111 + 233722169 GTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=21307
s chr3           92373019 2345 + 160039680 tgtatgtgtgtgtgtctgtgtgatagtgcttgtgagtgtgtgtgtgtgtgtgtgtatgtgAATAAT---TCAATGTACTGT-TTCCTTTAGAAGTTCTCA-------------GAGAAACTTTAGTGGTTGTGTACTATATTTGGTC-TCAACAATTCTTCACATAAGTGAT---TATCCATCTTCATGCTAGA------CACCTAAGAATAACCAACATATTTAGGACAGGTGAGAATTTAGTTTCTCTTCAGTC----------------ATAATAAGCAGTAT-------------------------------TGTGGTCATCTTCAG-AGGTGAGTCCAAGTA--------AATATACCCCAAGTAGATCATTTGACATGGCAGT--------ATGGCAAAGGATCTAAAGAATGCCCAAGATCATCAAGCTCTACTCTGTA-------GGGCATATACTATTTTCTATTGTTCACAGGAAAGCATGTAGTCTAGGCAGGAGATATGAACTGTCTCTTGGAAC---AGAATTATCA----AAGATGATGCTGAAATTA-----TAACCTAGAGTCCTTTTAATTCCTTTTTTTCAGCACTTAGGAAAATTT----AGTCTA-------AAAATC--CAGACATGTAAATGGGCTTGTGTACCACATAATACCAAGGATT-TGAAATAGA---AGAACCAGAACAGTTGCTCAGAGGAAAAAATATATTG-----AATCAAGAA-ATAGAACTTGGACAAC-----CAGAGTGAAAACAACTCAATTTCTGCATCTATCAAATCTTACCGAAACTGAAAAGTCAAGAGA---GCCCTCTGAGTCACAGCACAGAA-----------CTAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAG---TTCTACATCTACTGGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGCAGAA-TCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCCTGGTCTTCTATGTGATGTAGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATG-------CATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGTGCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTC--ATATACTTTAGCAGGTATGAGAACCTGAGACTTTCCTGAGATGCCCTTTACTGTCCAACCCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTT----------------GAGGATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATAT-------GTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCA--AGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATG----GATCTGAT-GTTCATGTG-TCCTTCTATCTTCTCTGTTCTAATCACC---CCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGT--------------------------TATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACC-CAAGAGCAAATGAGCATGGCAGCAATCTTCAGAAC---------------AAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGA---TGCAAATGAATCTTCTCTACCCTTCATCTTTCAAATGCCTGTTACATCTCATTATAGGGAAGGCATTTTTCTGAGACTGTAAAACTGTTTTTTTTTCCCCCAATGGAATGCTGAGAATGATCCTCCTTCAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAGTAGATGTCCCTCAGTGCCTTCACAGTATGGTTTC---CAAATCTGTGTGTCAC-------GGATGTTCCATTTG-------------------------CTGAATAAAGTATAATCTT--TTCAATGGTGTTCATGTGTTCTTTTCTTTTAAAACTCACTTTTCTATCTTTGTGA--TATGCTCATTTCCCTATATTTTTAACCTTTGGTCCACACGTCAATTTATAGCATTTGTGTTTTGATTGAATTTTGAGTCATGGCAAAAAT
s HiC_scaffold_1 95832203 2384 + 233722169 tgtgtgtgtgtgtgtgtgtgtg--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtaagCTGTGAGTATGCTGTATTCCTGTCTTGGTTTTCAATGTCCGAAGTGAGAGAAGCATCAGT---TGTGTATCATACTCCATCACCAGAAACTCCTCACATAGCTAATCTGTAAATAACTGGATGTTTGAATTTACCATGTGAAACTG--TGACATGACCAGGGCTGCCTTCAATGCAGTC---ATTCAGTCCATTTGAATGGGAAATATAAGGAAGAGTATCAACGTGTAAGAAAACTGTGTTATCTGACACTATAATCCTTTTCAACAGATAATTTTGAATagcagaaataagatatttctctAAGGATTTTTGATTCAGTCATGAAAAGAAAAGGCTGATGAGGAAAATATTGAGTAATGTCCCTTTACTCTGCCCTTTATCCACTGGTGAGTGTACTATTCTATATGG----------ACCTTGTAGTGATGACATCATGTGTAGACT----CTGTGAATGTTAGGTTTGTTCCTGCAGGATGATGGCCAGAGTAGTTCTCCACCAGAAACCCTTTT------CCTTTGTCAGGAGTAATGATAGTTCTGGGAGTGTACCTTGATGAACTCAGCAGAAATGATGCTGGGATG----ACTCAGTACTCCCAAAGATTCTGGAGCAGTTTTAAAATTCGAAAAACTGAAAGACAGAAAGTCTGTATTGTCCCAAATAAGGAAGACAGCATTTCAGTGACAGTTACAGAATCCAACCAA------TTATCCGCCAGTCATCATTAACTGAAACTGAATACTAAAGTGGTAGGGTCTCTGGGTCAC----CAGGATTTAACATTGGCTGGAGATGATg-----aaacaatgtattttttatttttaggggtCCTG-TCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAAACAGTGT---TTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCAGTTCCGAT-CTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGTTGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTT-----ATG--ATCATGAGATGGATGTTATTTACTTAAG----CGAAACTTATGACTGATACAATCATACAATATATTGGTTTGC--ATTGGCTTTATTGGTAGATAGGTTGATGTTcacatggaaaa----------------acaaa-------gtgccaAGGAAAGTTGGAtttgaattaaagaaaacaaaattatttttctttccaaa-----ttttcaGTGTCACTATAAAGATATCTTGTCTTAGCAGT-----------------TGGGAAATCCTTTAGTTCTTCCTTCTAATGGGACTTCATAACACTTTGAAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTAGAGA-----TACTTTCTTTGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCTC-TAGGAGAAG------CCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAAT-GTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCA---------CTTCC---------ACAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAA----------CTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaatagg--------cTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATATCCTGCAA-------TCCTTTACCCTGTA------ATCTGCCT----------------GGGAAGG----TTCCTGGCAGCTCAACAATCCTTTGTATACTGTAAGTTCACAGCTGTG--------------------TCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTCTC-CTTTGTCTCTAGCAGATGTTGTCCTGCATGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTTAATAAAGTACATTTTTTGTTGAACGG---ttgtgtatctttttcttttaaaactc-ttattagaaatatgtaatttttgttgATTTCCATATTTGCTTAATTTCTAGTTTA----------GATTCCTCCTGTG----GTTTGAATTTGGGTTCATATCAAAAGT

a score=22127
s chr3           92373364 1629 + 160039680 TCTACTCTGTAGGGCATATACTATTTTCTATTGTTCACAGGAAAGCATGTAGTCTAGGCAGGAGATATGAACTGTCTCTTGGAACA---GAATTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTAATTCCTTTTTTTCAGCACTTAGGAAAATT---TAGTCTAAAAATCCAGAC-ATGTAAATGGGCTTGTGTACCACATAATACCAAGGATTTGAAATAGAAGAACCAGAACAGTTGCTCAGAGGAA-------------AAAATA---------TATTGAATCAAGAAA--TAGAA---CTTGGACAACCAGAGTGAAAACAACTCAATTTCT---GCATCTATCAAATCTTACCGAAACTGAAAAGTCAAGAGAGCCCTCTGAGTCACA-GCACAGAA-CTAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACT-GGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGC-AGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCC-TGGTCTTC---TATGTGATGTAGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATGCATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGT---------------------------------------------------------GCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTCATAT-ACTTTAGCAGGTATGAGA-ACCTGAGACTTTCCTGAGATGCC----CTTTACTGTCCAAC---CCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAG---GATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTTCTCTGTTC-----TAATCACCCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTACCCTT
s HiC_scaffold_1 95911190 1554 + 233722169 TCCTCTGTGAGAGGCAAGTGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCA-CAGGGCAGACCTGCCCTTCCCTGTCACATGTGGTTTATTA--GATGGAACGAGAACCAGCCCACAGTGTCATCTTAGATCTCTCCTTTC----TCTAGCAGACCTACATACTGTGAAGAG--AGATTATGAAAATGGACTTAAGTACCATAATGTAGCCATCACTTTAAGCACAACAAAGACATCAAACGGTCATGAGAATCAAAGATGTCAAAAAGTAGGAGGGCATTACTGTCCCAAGAAAGATAGAGATCCTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCCCAGGTGGGT--TCTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTTTTCC--TATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTG-AATATAATCTGAGACATCAAG-GTGGTGTGCACACTTTATGT-------TTGTGGGATGAATGTTACTT---CAGTGAT-GGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACA--ATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTGCCCAGTAAAGTTCTCAAGG-------GATAAAGATG---ACAGGGA-----TTGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCCCTTTGTGAG----------------------------------------AAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAGTCTTAAGG----------------------------AGGAGTAGCAATGTGCCTtggtattgcatgtttttct-tctttttagtacATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGT-CATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTc-atgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTT

a score=24938
s chr3           92373365 1644 + 160039680 CTACTCTGTAGGGCATATACTATTTTCTATTGTTCACAGGAAAGCATGTAGTCTAGGCAGGA-GATATGAACTGTCTCTTGGAACA-GAATTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTA-ATTCCTTTTTTTCAGCACTTAGGAAAATTTAGTCTAAAAATCCAGACATGTAAATGGGCTTGTGTACCACATAATACCAAGGATTTGAAATAG--AAGAACCAGAACAGTT-----GCTCAGAGG----AAAAAATA---------TATTGAATCAAGAAATAGAA-----CTTGGACAACCAGAGTGAAAACAACTC--AATTTCTGCAT--CTATCAAATCTTACCGAAACTGAAAAGTCAAGAGAGCCCTCTGAGTCACA-GCACAGAAC-TAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACT-GGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGC-AGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCCTGGTCTTCTATGTGATGT----AGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATGCATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGT---------------------------------------------------------GCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTCATATACTTTAGCAGG-TATGAGA-ACCTGAGACTTTCCTGAGATGCC----CTTTACTGTCCAAC---CCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAG---GATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTTCTCTGTTC-----TAATCACCCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTACCCTT-CATCTTTCAAATGCCT
s HiC_scaffold_1 95904410 1617 + 233722169 CCACTGTGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGACTCAAACTCACAAGGCTGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctacc-AGAACTATGTACAGTGAAGAGAGA-ATATGAAAATGGACTTAAGTACCATAATGTAGCCATCAATGTAAGTGACCAAGACATCAAAcagtttttaaattcaaagatGTCAAAAAGTAGGAGGGGATTATTGTTCAAAGAAACATAGAGAGCCTTTGAGAAC-AGGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCTCAGGTGGAC--TCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCT-TGATGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCAGGTGTGCACACTTT-----ATG--ATTATATGATGGATGTTACTT---CAGTGAT-GGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACA--ATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGG-------GATAATGATGAG---AGGGA-----TTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCTTTTGTGAG----------------------------------------AAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAAT------ATTGTAAGCAT------GAGTAGCAATGTGCCTTGGTATTGCgagtttctct-tcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGT-CATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCT------------GAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTc-atgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACCTGTAATCTGCCT

a score=25404
s chr3           92373365 1644 + 160039680 CTACTCTGTAGGGCATATACTATTTTCTATTGTTCACAGGAAAGCATGTAGTCT----AGGCAGGAGATATGAACTGTCTCTTGGAACA---GAATTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTA-ATTCCTTTTTTTCAGCACTTAGGAAAATTTAGTCTAAAAATCCAGACATGTAAATGGGCTTGTGTACCACATAATA-CCAAGGATTTGAAATAGAAGAACCA----GAACAGTTGCT-----CAGAGG----AAAAAATA---------TATTGAATCAAGAAATAGAA-----CTTGGACAACCAGAGTGAAAACAACTCAATTTCT---GCATCTATCAAATCTTACCGAAACTGAAAAGTCAAGAGAGCC---CTCTGAGTCACA-GCACAGAAC-TAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACT-GGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGC-AGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCCTGGTCTTCTATGTGATGT----AGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATGCATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGT---------------------------------------------------------GCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTCATAT-ACTTTAGCAGGTATGAGA-ACCTGAGACTTTCCTGAGATGCC----CTTTACTGTCCAAC---CCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAG---GATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTTCTCTGTTC-----TAATCACCCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTA-CCCTTCATCTTTCAAATGCCT
s HiC_scaffold_1 95890858 1614 + 233722169 CCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactcacaaggcag-----acagGCCGTGCCTTATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctacc-AGAACTATGTACAGTGAAGAGAGA-ATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTT-AAGTACAAACAACACATCAAACAGTTGTTAAATACAAAGATGTCAAAAGATAGGAGGGGATTATTGTCCTAAGAAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGT-------AAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCT-TGATGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGTGGGTGTGCACATTTT-----ATG--ATTATATGATGGATGTCACTTCACTGAT----AGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACA--ATTTGGGGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGGGCGCAGTGATGTTCTCAGGG-------GATAATGATGAG---AGGGA-----TTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCTTTTGTGAG----------------------------------------AAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAAT------ATTGTAAGCAT------GAGTAGCAATGTGCCTTGGTATTGcgagtttttct-tcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACT-CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCT------------GAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAA-GAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCT

a score=24639
s chr3           92373368 1641 + 160039680 CTCTGTAGG--GCATATACTATTTTCTATTGTTCACAGGAAAGCATGTAGTCTAGGCAGGAGATATGAACTGTCTCTTGGAACA---GAATTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTAA----TTCCTTTTTTTCAGCACTTAGGAAAATTTAGTCTAAAAATCCAGAC-ATGTAAATGGGCTTGTGTACCACATAATA-CCAAGGATTTGA----AATAGAAGAACCAGAACAGTT-----GCTCAGAGG----AAAAAATA---------TATTGAATCAAGAAA--TAGAA---CTTGGACAACCAGAGTGAAAACAACTCAATTTCT---GCATCTATCAAATCTTACCGAAACTGAAAAGTCAAGAGAGCCCTCTGAGTCACAGCACAGAACTAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTA----------------AGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACT-GGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGC-AGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCC-TGGTCTTC---TATGTGATGTAGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTA--------TCAATGCATACCACAT--------------ACCACTGT------GACAAGTGGCTTTCC--------TTTTCATTTAGTAGGT---------------------GCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTCATAT-ACTTTAGCAGGTATGAGAACCTGAGACT-TTCCTGAGATGCC----CTTTACTGTCCAAC---CCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAG---GATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTTCTCTGTTC-----TAATCACCCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTA-CCCTTCATCTTTCAAATGCCT
s HiC_scaffold_1 95930178 1612 + 233722169 CTCTGTGAGTGGCAAGTGTTTGTTTCCTCTGTTCATACAAAAAGACTCAAACTCA-CAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGAACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTAGCA----GACCTACATACTGTGAAGAG--AGACTATGAAAATGGACTTAAGTACCAAAATGTAGCCATCAATTTAAGCACAATAAAGACATCA-AACAGTCTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTGAGAACCTGTTGGAAAAACCTTCAAATTCCCACACAACCATCAGGTA--AATGAAACAGACTGCTCCGGTGGAC--TCTGATTCACA----------AGCAGTTAATGCAGTGGATGGGA------TTCTGGAGCAGGTTTTTTATTACTTGCAAGTACCTGTCAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTG-AATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTT-----ATG--ATTATATGATGGATGTTACTT---CAGTGAT-GGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACA--ATTTGGGGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTGCCCAGTGAAGTTCTCAGGG-------GATAATCATG---ACAGGGA-----TTGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCATTTTGTGAG----------------------------------------AAAATGTTTTCCCCAAGAC------------TGAGGAAGCAGGTTC-------------ATAAAGTGC--------AAGAGAAAATCCAAAAAGTCTTAAGAAGGGAATACTGTAAGCATG------------AGTAGAAATGTGCCT--TGGTATTGTGTAAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGT-CATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCT------------GAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTCAGCTGTAATCTGCCT

a score=23310
s chr3           92373388 1605 + 160039680 TTTCTATTGTTCACAGGAAAGCATGTAGTCTAGGCAGGAGATATGAACTGTCTCTTGGAACA---GAATTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTAATTCCTTTTTTTCAGCACTTAGGAAAATTTA------GTCTAAAAATCCAGACATGTAAATGGGCTTGTGTACCACATAATA-CCAAGGATTTGA----AATAGAAGAACCAGAACAGTT-----GCTCAGAGG----AAAAAATA---------TATTGAATCAAGAAA--TAGAA----CTTGGACAACCAGAGTGAAAACAACTCAATTTCT---GCATCTATCAAATCTTACCGAAACTGAAAAGTCAAGAGAGCCCTCTGAGTCACA-GCACAGAAC-TAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACT-GGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGC-AGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCC-TGGTCTTC---TATGTGATGTAGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATGCATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGT---------------------------------------------------------GCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTCATAT-ACTTTAGCAGGTATGAGAACCTGAGACT-TTCCTGAGATGCC----CTTTACTGTCCAAC---CCCAGATAGCTTGTT--GGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAGGATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTTCTCTGTTC-----TAATCACCCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTACCCTT
s HiC_scaffold_1 95924669 1574 + 233722169 TTTCCTCTGTTCATAGAAAAAGACTCAAACTCA-CAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTT----CTCTGGCAGACCTACATACTGTGAAGAGA---GAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCA-AACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCCCAGGTGGGT--TCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTC-AGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTG-AATATAATCTGAGACTTCAAG-GTGGTATGCACATTT-----CATGT--TTGTGAGATGGATGTTACTT---CAGTGAT-GGAAACTTAAGACTAGGCAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACA--ATTTGTGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGATAAACCTGACAGAGATTG--------AGTGA------GATGCTCAGGACTTTTGAACTTGTGACTGCCTTTTGTGAG----------------------------------------AAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAAT------ATTGTAAGCAT------GAGTAGCAATGTGCCTTGGTATTGcgagtttttct-tcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGT-CATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCT------------GAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCAGTTc-atgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTT

a score=24488
s chr3           92373395 1598 + 160039680 TGTTCACAGGAAAGCATGTAGTCTAGGCAGG-AGATATGAACTGTCTCTTGGAACA-GAATTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTA-ATTCCTTTTTTTCAGCACTTAGGAAAATTTAGTCTAAAAATCCAGACATGTAAATGGGCTTGTGTACCACATAATACCAAGGATTTGAAATAG--AAGAACCAGAACAGTT-----GCTCAGAGG----AAAAAATA---------TATTG----AATCAAGAAATAGAACTTGGACAACCAGAGTGAAAACAACTC--AATTTCTGCAT--CTATCAAATCTTACCGAAACTGAAAAGTCAAGAGAGCCCTCTGAGTCACA-GCACAGAACTAGCAATGATG---TCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACT-GGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGC-AGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCCTG-GTCTTCTATGTG-ATGTAGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATGCATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGT---------------------------------------------------------GCTTGAATAGAGTATATTCCTCTTTGATGTACATACTTTGCTGTTCTTTGAAATGTCATAT-ACTTTAGCAGGTATGAGA-ACCTGAGACTTTCCTGAGATGCC----CTTTACTGTCCAAC---CCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAG---GATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAACAAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTTCTCTGTTC-----TAATCACCCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGA---------ACCT------TGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTACCCTT
s HiC_scaffold_1 95897711 1591 + 233722169 TGTTCACAGAAAAAGActcaaactcacaaggcagaCCGGCCCTGCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCAGCCCACAGTGTCATTTTagatttctccttttctctacc-AGAACTATGTACAGTGAAGAGAGA-ATATGAAAATGGCCTTAAGTACCGTAATGTAGCCATCAATTTAAGTGACCAAGACATCAAAcagtttttaaattcaaagatGTCAAAAAGTAGGAGGGGATTATTGttcaaagaaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCTCAGGTGGGT--TCTGATTCACAAGCACTTAAT--GCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAGACAACAAGGCGGGTGTGCACACTTT-----ATG--ATTATATGATGGATGTTACTTCACTGAT----AGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCC--ACACAATTTGGGGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattctttatgtgtagCTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGG-------GATAATGATGAG---AGGGA-----TTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCTTTTGTGAG----------------------------------------AAAATGTTTTC---------------------------------CCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAAT------ATTGTAAGCAT------GAGTAGCAATGTGCCTTGGTATAGCgagtttctct-tcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGT-CATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTC-ATGAAAAGGGAAGGAACTCTGGCTCACCCCCTT-TATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTT

a score=5517
s chr3           92374664 129 + 160039680 AGCAGCCCTGCCAGCCT------CCTCCTGTTATGCCCACCAC--CAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACC---------------TTGTCCCGAGCCATGTCTTCCT
s HiC_scaffold_1 95833905 152 + 233722169 AGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTT

a score=5200
s chr3           92374667 152 + 160039680 AGCCCTGCCAGCCTCC------TCCTG--TTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833962 151 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAAC------CACAATGTCCTATGCAA---ACTCCCCTGCCCTGCCAACAGAAGTGCCCCCC

a score=3805
s chr3           92374686  91 + 160039680 TGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCC------------------AAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCC
s HiC_scaffold_1 95912438 109 + 233722169 TGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCC

a score=4153
s chr3           92374687 70 + 160039680 GTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCA
s HiC_scaffold_1 95899046 70 + 233722169 GCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA

a score=5282
s chr3           92374687 132 + 160039680 GTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931516 126 + 233722169 GCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGC---AATGCCCTCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5415
s chr3           92374687 132 + 160039680 GTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905750 126 + 233722169 GCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGC---AATGCCCTCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6513
s chr3           92374687 132 + 160039680 GTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCC---------CGAGCCATGTCTTCCT------------TCTCCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899019 153 + 233722169 GCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5377
s chr3           92374690 129 + 160039680 ATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892202 123 + 233722169 ATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGC---AATGTCCTCCTGTGC---ATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5244
s chr3           92374690 129 + 160039680 ATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925989 123 + 233722169 ATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAACAGC---AATGCCCTCCTGTGC---ATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=4202
s chr3           92374727 115 + 160039680 CCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACC---------------TTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCC
s HiC_scaffold_1 95833949 124 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAA------CCACAATGTC

a score=16485
s chr3           92385359 1753 + 160039680 AAAGATTAAAGAGA--TAGTGTCAAAAAACAAGAAAGAAAAATTTTAACAACCAATT---ATACCACCTTTACCCCCACAAGCTTTTCCAACTACAACAAAATACTAAAACTGAGAAAGAAGGGATGGTCTCTGAGTCACT-GCACTTTACCCAGTGACTATGTGTCCAGGAACAGGATATTTCCTATTTTTGAGAGTCCTGGTTAGGCCAGTTAAACACAGATTTGCATTTTGGTTATGAAATTGTTGGATGATGCTACAATGAATTG---TCTTTACAACCTACAGGGCGGGGCAGCCAGTCTTATAAAAAGGTGCTTGGATGAATAACTACAAGACACTTGGTACTCAAGCTCTGGACTAAGG---AGAACCTGGTGAGTCTGACTTCCCAAATTGATTTGTGCTTATGCTTTCTCATATACTTTCATTTGAAGAGACATGGTGGTTCCAAACTCTGAGCAAGTGTAAAATGTTAGGTACTgagctggagacatggatgagtgattagagcactattctcttccagaggttctggtttcagttcctaacaaccacatggtgacctgtactgctatctgatgccctctcttgatatacaggcatttaaacagatacaactctcatagacattaaaaaaaaaaaactttcaagaaaaaTGTTAGCTACTGACTGGCCTGAATTTAAGCTGTGTAGTAAAGTGACACA-CACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGGTTG-ATGCCCATATGGAAAATCACGGCAATC-AGAATGGTTGATTTGAAAAAGATGTCAGAACATTG-AATTTTCATTTT--CTTACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAACATTAGACTTTTAATTTTCCTAGACATCCCCCAATGTGAACCCTATCCTTTTGG--ATTTCACAGTT-GCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTTGTATAAGCAATGTTACCCTGTTCTTTGATAAAGAGTTATTTCCCAATGTGGGGTATGTAACCAAAGAAGGCCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAG-GAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCT-CCATGTGCCTGTGATAACTCCT
s HiC_scaffold_1 95891121 1363 + 233722169 AAAGATAGGAGGGGATTATTGTCCTAAGA-AAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACA--------CAGC--CATCAGGTAAATGAAAC--AGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATG--GCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAAT-GTCTGACCCAGC--CCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCA------------------------GTTGTT----------------TGTTGAATATAAT---CTGAGACAGCAAGGTGGGTGTG---------------------------------------------------CACAT-------TTTATGATTATATGATG---------GATGT-----CACTTCA------------CTGATAGAAACTTAA---------------------------------GACTAG-------------------GTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACAATTTGGGGTTCCTTTCGAAGGGGTATGACTTA------------------ATTTGCTGTGAGATACTTCAAT------TCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGGGCGCAGTGAT--GTTCTCAGGGGA-TAATGATGAGAGGGATTGAGTGAGATGCTCAGGACC-------TTTGAACTTGTGA-------CTGCCTTTTGTGAGAAAATGTTTTCCC-------------------------------CAAGACTGAG-GAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAA-TATTGTAAGCATGAGTAGCAATGTGCCTTGGTATTGcgagtttttcttct------------tttcagtacATGA--ATTCCTTCTTCTGA----ACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTG----------------GTTAAAA--------------------------------------------------------------------------------------------CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAG---CAAGAAGAGCCTT--CTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCT

a score=17671
s chr3           92385386 1726 + 160039680 CAAGAAAGAAAAA-----TTTTAACAACCAATTATACCACCTTTACCCCCACAAGCTTTTCCAACTACAACAAAATACTAAAACTGAGAAAGAAGG----GATGGTCTCTGAGTCACT-GCACTTTACCCAGTGACTATGTGTCCAGGAACAGGATATTTCCTATTTTTGAGAGTCCTGGTTAGGCCAGTTAAACACAGATTTGCATTTTGGTTATGAAATTGTTGGATGATGCTACAATGAATTGTCTTTACAACCTACAGGGCGGGGCAGCCAGTCTTATAAAAAGGTGCTTGGATGAATAACTACAAGACACTTGGTACTCAAGCTCTGGACTAAGG--AGAACCTGGTGAGTCTGACTTCCCAAATTGATTTGTGCTTATGCT-TTCTCATATACTTTCATTTGAAGAGACATGGTGGTTCCAAACTCTGAGCAAGTGTAAAATGTTAGGTACTgagctggagacatggatgagtgattagagcactattctcttccagaggttctggtttcagttcctaacaaccacatggtgacctgtactgctatctgatgccctctcttgatatacaggcatttaaacagatacaactctcatagacattaaaaaaaaaaaactttcaagaaaaaTGTTAGCT-ACTGACTGGCCTGAATTTAAGCTGTGTAGTAAAGTGACACA-CACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGGTT-GATGCCCATATGGAAAATCACGGCAATC-AGAATGGTTGATTTGAAAAAGATGTCAGAACATTG-AATTTTCATTTTCT--TACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAACATTAGACTTTTAATTTTCCTAGACATCCCCCAATGTGAACCCTATCCTTTTGG------ATTTCACAGTT-GCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTTGTATAAGCAATGTTACCCTGTTCTTTGATAAAGAGTTATTTCCCAATGTGGGGTATGTAACCAAAGAAGGCCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAG-GAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCT-CCATGTGCCTGTGATAACTCCT
s HiC_scaffold_1 95924933 1339 + 233722169 CAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAA-----ACCTCCAAA-----TTCCCAC-ACAGCCATCAGGTAAA--TGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATG--GGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTCAGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCT-TGCTGTCCTCAGTTGTTTG---TTGAA---------------TATAATCTGAG-------------------------------------------------------------------------------------------ACTTCAAGGTGGTATGCAC----ATTTCATGT--------------------------------------------------------------TTGTGAGATGGATGTTACTTCAGTGATGGA----AACTTAAGACTAG--GCAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACAATTTGTGGTTCCTTTCAAAGGGGTATGACTTA------------------ATCTGCTGTGAGATCCTTCAAT----------TCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGATAAACCTGA---CAGAGATTGAGTGAGATGCTCAGGAC-------TTTTGAACTTGTGA-------CTGCCTTTTGTGAGAAAATGTTTTCCC-------------------------------CAAGACTGAG-GAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAA-TATTGTAAGCATGAGTAGCAATGTGCCTTGGTATTGcgagtttttcttct------------tttcagtacATGA--ATTCCTTCTTCTGA----ACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATA------------------------------------------------------------------------------------------------------------ACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCA-GTTcatgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCC----TTCTTCATCCTTTCACCTGTAATCTGTCTCCAACGATTCCT

a score=19536
s chr3           92385405 1946 + 160039680 CAACCAATTATACCACCTTTACCCCCACAAGCTTTTCCAACTACAACAAAATACTAAAACTGAGAAAGAAGGGATGGTCTCTGAGTCACTGCACTTTACCCAGTGACTATGTGTCCAGGAACAGGATATTTCCTATTTTTGAGAGTCCTGGTTAGGCCAGTTAAACACAGATTTGCATTTTGGTTATGAAATTGTTGGATGATGCTACAATGAATTGTCTTTACAACCTACA--------GGGCGGGGCAGCCAGTCTTATAAAAAGGTGCTTGGATGAATAACTACAAGACACTTGGTACTCAAGCTCTGGACTAAG---GAGAACCTGGTGAGTCTGACTTCCCAAATTGATTTGTGCTTATGCTTTCTCATATACTTTCATTTGAAGAGACATGGTGGTTCCAAACTCTGAGCAAGTGTAAAATGTTAGGTACTgagctggagacatggatgagtgattagagcactattctcttccagaggttctggtttcagttcctaacaaccacatggtgacctgtactgctatctgatgccctctcttgatatacaggcatttaaacagatacaactctcatagacattaaaaaaaaaaaactttcaagaaaaaTGTTAGCTACTGACTGGCCTGAATTTAAGCTGTGTAGTAAAGTGACACACACTATTAGGTTGTTTTTGCTTTGATGTGTAGGT-GGTTGATGCCCATATGGAAAATCACGGCAATCAGAATGGTTG-ATTTGAA--AAAGATGTCAGAACATTGAATTTTCATTTTCTTACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAACATTAGA-CTTTTAATTTTCCTAGACATCCCCCAATGTGAACCCTATCCTTTTGGATTTCACAGTTGCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTT-GTATAAGCAATGTTACCCTGTTCTTTGATAAAGAGTTATTTCCCAATGTGGG------GTATGTAACCAAAGAAGGCCTTTCA-AAATTAAGTGAAACAAATCACTAAATTGGAAGGAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCT---ATATAT----GAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACC-CAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTGTTTTTGCTGTCAAGCAGATACTGAGAATAGTCCTTCCTCAGC-GCTTCACTGTCCCAGATGCTCAGAAGGAAGAGTTGCAGCAGTCTACCCTGTTCCCA-CCCAGGACATTTTTCAAATCTTTCTGACA-------------TTTTGCCATAGTAGTGGTCATTGTTTCTTATTTCCTGAATAAAAAGAACA-ATCTTGTTGATTGTATGCATGTATGCTTTCTTCTAAACCTC
s HiC_scaffold_1 95832940 1552 + 233722169 CAACCAATTAT------------CCGCCAGTCATCATTAACTGAAACTGAATACTAAAGT----------GGTAGGGTCTCTGGGTCACCAGGATTTAAC-ATTGGCTGGAGATGATgaaacaatgtattttttatttttaggggtCCTG-TCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCA---------AAACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCA-GTTCCGATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGTTGGCCTTCT----------------------------------------------------------TAGGTATTGAATT-------------------------------------------------------------------------TAACCAGGAC--------------------------ACAAGAAGTTTAGTGGGTTCAACTT--ATGATCAT------------------GAGATGGATGTTATTTACT---TAAGCGAAACTTA---TGACTGATACAATCATACAATATATTGGTTTGCATTGGCTTTATTG-GTAGATAGGTTGATGTTcacatggaaaaacaaagtgccaAGGAAAGTTGGAtttgaattaaagaaaacaaaatt----atttttctttccaaattttcaGTGTCACTATAAAGATATCT-TGTCTTAGCAGTTGGGAAATCCTTTAGTTCTTC-------CTTCTAATG----------------GGACTTCATAAC---------------------ACTTTGAAACT------------------TGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTAGAGA--TACTTTC---TTTGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCT---CTAGGAGAAGCCAGAAAACTGTA-------GAAAGGGATCTGAGACTCAAGAATGT-TCTAAGAGAGAGCAATAATATGACATGATA-GTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGA----ACATTGCCATATACTACTTT-CAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATA---------------------------------------------------------------------------------ACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCC------ACAACCACAATGTC---CTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaata---ggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATAT-----------CCTGCAATC---CTTTACCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGCTCAACAAT---CCTTTGTATACTGTAAG---------------------TTCACAGCTGTGTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTCTCCTTTGTCTCTAGCAGATGTTGTCCTGCATGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTTAAT--AAAGTACATTTTTTGTTGAACGGttgtgtatct-ttttcttttaaaactc

a score=16935
s chr3           92386027 1085 + 160039680 AATTTAAGCTGTGTAGTAAAGTGACACA-CACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGGTT-GATGCCCATATGGAAAATCACGGCAATCAGAATGGTTG-ATTTGA---AAAAGATGTCAGAACATTGAATTTTCATTTTCTTACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAAC-ATTAGA-CTTTTAATTTTCC-----TAGACATC--------CCCCAATGTGAACCCTATCCTTTTGGATTTCACAGTTGCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTTGTATAAGCAATGTTACCCTGTTCTTTGATAAAGAGTTATTTCCCAATGTGGGGTATGTAACCAAAGAAGGCCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAG-GAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCT-CCATGTGCCTGTGATAACTCCT
s HiC_scaffold_1 95930923  879 + 233722169 AACTTAAGTTTAG--GTAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTG--------CCCAGTGAAGTTCTCAGGGGATAATCATGACAGGGATTGAGT--GAGAT----------------------GCTCAGGACTTTTGAACT-------------------TGTGACTGCATTTTGTGAGAAAATGTT--TTCCC-------------------------------CAAGACTGAG-GAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAAGGGAA-TACTGTAAGCATGAGT-------------AGAAATGTGCCTTGGTATTGTGTAAGTTCTTCTTTTCAGTACATGA--ATTCCTTCTTCTGA----ACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATA------------------------------------------------------------------------------------------------------------ACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTcatgaaaaag-gaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCC----TTCTTCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCT

a score=13715
s chr3           92386042 1102 + 160039680 GTAAAGTGACACA-CACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGG-TTGATGCCCATATGGAAAATCACGGCAATC-AGAATGGTTGATTTGAAAAAGATGTCAGAACATTGAA------TTTTCATTTTCTTACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAAC-ATTAGA--CTTTTAATTTTCCTAGACA------------TCCCCCAATGTGAACCCTATCCTTTTGGATTTCACAGTTGCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTTGTATAAGCAATGTTACCCTGTTCTTTGATAAAGAGTTATTTCCCAATGTGGGGTATGTAACCAAAGAAGGCCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAG-GAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCA-----------CCTCCATG--TGCCTGTGATAACTCCTGAAAGGAAAG---TCATTTCCCTGTTTTTGCTGTC
s HiC_scaffold_1 95911946  869 + 233722169 GCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAA---TGAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTG--------CCCAGTAAAGTTCTCAAGGGATAAAGATGACAGGGATTGAGT--GAGAT----------------------GCTCAGGACTTTTGAACTTGTGA---------------------CTGCCCTTTGTGAGAAAATGTTTTCCC-------------------------------CAAGACTGAG-GAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAGTCTTAA--GGAGGAGTAGC---------AATGTGC-------------------CTtggtattgcatgtttttcttcttttta-gtacATGAATTCCTTCTTCTGA----ACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATA---------------------------------------------------------------------------------------------------------------------------------------ACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTCA-GTTcatgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACC----TTCTTCACCCTTTCACATATAATCTGCCTCCATGGTTTCTTGT-----CTCCCTACAGGGGAACTCTCATCTCTCCCTTGGTCCCGTC

a score=16575
s chr3           92386042 1048 + 160039680 GTAAAGTGACACA-CACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGGTTG-ATGCCCATATGGAAAATCACGGCAATC-AGAATGGTTGATTTGAAAAAGATGTCAGAAC--ATTGAATTTTCATTTTCT-TACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAAC-ATTAGACTTTTAA--TTTTCCTAGACA------------TCCCCCAATGTGAACCCTATCCTTTTGGATTTCACAGTTGCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTTGTATAAGCAATGTTACCCTGTTCTTTGATAAAGAGTTATTTCCCAATGTGGGGTATGTAACCAAAGAAGGCCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAG-GAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCT
s HiC_scaffold_1 95905169  847 + 233722169 GTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACAATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTG--------CCCAGTGACGTTCTCAGGGGATAATGATGAGAGGGATTGAGT--GAGAT----------------------GCTCAGGACCTTTGAACTTGTGA---------------------CTGCCTTTTGTGAGAAAATGTTTTCCC-------------------------------CAAGACTGAG-GAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAA-TATTGTAAGCATGAGTAGCAATGTGCCTTGGTATTGCgagtttctcttct------------tttcagtGCATGA--ATTCCTTCTTCTGC----ACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATA------------------------------------------------------------------------------------------------------------ACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGGTc-atgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCC----TTCTTCATCCTTCCACCT

a score=17017
s chr3           92386430 660 + 160039680 CAAAATTAAGTGAAACAAATCACTAAATTGGAAG-GAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGT------TAATGTGTATATAT-TAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCC-AAGAAACCCCTGTACTTCAGCCTTCCACCT
s HiC_scaffold_1 95898763 545 + 233722169 CAAGACTGAG-GAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAA-TATTGTAAGCATGAGTAGCAATGTGCCTTGGTATAGCgagtttctcttc-------------------ttttcagtGCATGA--ATTCCTTCTTCTGC----ACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATA---------------------------------------------------------------------------------ACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGGTC-ATGAAAAGGGAAGGAACTCTGGCTCACCCCCTT-TATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGAC-----TGTTTTATCCTTTCAGCT

a score=4118
s chr3           92386682 129 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC--CCAAAGTGCCCA
s HiC_scaffold_1 95892203 120 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCT-----GTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCA

a score=4005
s chr3           92386682 129 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC--CCAAAGTGCCCA
s HiC_scaffold_1 95931520 120 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT-----GTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCA

a score=4258
s chr3           92386682 129 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC--CCAAAGTGCCCA
s HiC_scaffold_1 95925990 120 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT-----GTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCA

a score=4118
s chr3           92386682 129 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC--CCAAAGTGCCCA
s HiC_scaffold_1 95905754 120 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT-----GTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCA

a score=5505
s chr3           92386682 156 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC--CCAAAGTGCCCA
s HiC_scaffold_1 95899023 147 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCCT-----GTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCA

a score=5546
s chr3           92386682 156 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGT----CCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCA
s HiC_scaffold_1 95833967 159 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAAC-CACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTA

a score=3871
s chr3           92386718 120 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCC--CCAAAGTGCCCA
s HiC_scaffold_1 95912497 111 + 233722169 CCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCT-----GTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCA

a score=5037
s chr3           92386718 107 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCC
s HiC_scaffold_1 95892185 101 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCC

a score=5055
s chr3           92386718 107 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCC
s HiC_scaffold_1 95925972 101 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCC

a score=5037
s chr3           92386718 107 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCC
s HiC_scaffold_1 95905736 101 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCC

a score=5055
s chr3           92386718 107 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCC
s HiC_scaffold_1 95931502 101 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCC

a score=6387
s chr3           92386718 134 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCC
s HiC_scaffold_1 95899005 128 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCC

a score=7221
s chr3           92386718 188 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTC
s HiC_scaffold_1 95833949 164 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAA---------------------CCACAATGTCCTATGCAAACTCCCCTGCCC---TGCCAACAGAAGTGCCCCCC

a score=3687
s chr3           92386745 158 + 160039680 CCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCC
s HiC_scaffold_1 95912497 110 + 233722169 CCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCT--------------------------------GTGCA----------TCCTGCCCCATCCTGCCAGCAGAAGTACCC

a score=6173
s chr3           92386745 158 + 160039680 CCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCC
s HiC_scaffold_1 95925972 137 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCT-----GTGCA----------TCCTGCCCCATCCTGCCAGCAGAAGTACCC

a score=6051
s chr3           92386745 158 + 160039680 CCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCC
s HiC_scaffold_1 95931502 137 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCT-----GTGCA----------TCCTGCCCCACCCTGCCAGCAGAAGTACCC

a score=6164
s chr3           92386745 158 + 160039680 CCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCC
s HiC_scaffold_1 95905736 137 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCT-----GTGCA----------TCCTGCCCCACCCTGCCAGCAGAAGTACCC

a score=7495
s chr3           92386745 158 + 160039680 CCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCT------------CCCTCATACCAGCAGAAATGCCC
s HiC_scaffold_1 95899005 164 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCC

a score=6609
s chr3           92386745 111 + 160039680 CCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCA
s HiC_scaffold_1 95833949 111 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=5933
s chr3           92386746 157 + 160039680 CAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCC
s HiC_scaffold_1 95892186 136 + 233722169 CAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCCT-----GTGCA----------TCCTGCCCCACCCTGCCAGCAGAAGTACCC

a score=3676
s chr3           92386772 80 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCC
s HiC_scaffold_1 95912497 74 + 233722169 CCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCC

a score=5480
s chr3           92386772 108 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCT
s HiC_scaffold_1 95892185 102 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCT

a score=5498
s chr3           92386772 108 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCT
s HiC_scaffold_1 95925972 102 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT

a score=5498
s chr3           92386772 108 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCT
s HiC_scaffold_1 95931502 102 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT

a score=5611
s chr3           92386772 108 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCT
s HiC_scaffold_1 95905736 102 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT

a score=5366
s chr3           92386797 118 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACC
s HiC_scaffold_1 95833947 118 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=5711
s chr3           92386797 148 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACC
s HiC_scaffold_1 95899003 130 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCC------------AAAGTGTCCTG------AGCCATGCCCACCTCCACAACAGCAATGTCCTCC

a score=3822
s chr3           92386799 81 + 160039680 CCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCT
s HiC_scaffold_1 95912497 75 + 233722169 CCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCT

a score=3820
s chr3           92386824 121 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACC
s HiC_scaffold_1 95931500 103 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCC------------AAAGTGTCCTG------AGCCATGCCCACCTCCACAACAGCAATGCCCTCC

a score=3839
s chr3           92386824 108 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAAC
s HiC_scaffold_1 95899003 108 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCAC

a score=3933
s chr3           92386824 121 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACC
s HiC_scaffold_1 95905734 103 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCC------------AAAGTGTCCTG------AGCCATGCCCACCTCCACAACAGCAATGCCCTCC

a score=4083
s chr3           92386824 108 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAAC
s HiC_scaffold_1 95833947 108 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCAC

a score=10431
s chr3           92397893 1402 + 160039680 cccggctAGAACAGCCATTTCTATAAAGG-GCCCTTGGCTGTGTGTCTTCAG-ACTTCTGGTCCTTTACTCCTGGATTACTTTGGAGAACCTGGTGAGCGTCATT-CTTGAGTTGGTCAGGTTTTATGGTCTTCGTATGCGTTATCATAAATTTTGAGAGAATATATGTGGTGAGTCCATTTT-TGATCAGGAGATGAACAGTACTTACCTA---GCAGCCAGAAATGGATATAATAGTCCACTGTGGTAGATGATTTTCCCTTTTAGTTGGTGAATAGTGTGACAGAGTACATTACTATTTCACA-GGCATATTTTGGTGTTATTTTCAAAGACACAGGCCTTTCAGGTATTATTAAAACTTGAATTATTCTTTATGGCACAAACCCAGTCAACCTG---------CTTGAATGCTACAAACAGAGACTTTTATTGGTTCT----------GAGACTGCTTACATTTCCAGAACCTGAAACTTCCTGCCT----GGTGTTCCTTT-GTGTAAGTAGTCTTATT---------------TATATTCTCTTCAAAAAAAAAAAAGGTGGAATAAACAAAGAAGGGATTCC----AATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAATGAACCTGTGTTCCAAGTCTCAATCTTCCCTATATT--------GATAACC-----TGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCC--------------------------------ATCCACCACAAAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTC----------------------CTCTTGAAGCAGAAGTGGCCT--------CCTCCAGTTTTGCAAAGAAAAGTGCCCACCA-AAGAACAAGTGAGAGATTCAACCATCATCAGGACCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCC--TCATATGCCTGTCATGATATCTGATAGAGAAGAATTTACGTG-AGACTGCAATGCTGCTGCTGTCAGGGGGCCACTGAGAATGGTCCTTCTTCAGTGGTTCAATATCTCAAGATTACAGAGGGAAGACCAGAAAATGTCTCCTTAGTGTCCA-TAAAGGATATCTTAAAATATCCCTAT--CACTTGGACAG-GGTAGTTACC------ATTGTTG--TTTCATTTA---CTGAATAAAGTAT-TGCTTTGTTGATGGTATTCATGTTTTCTTACTTCTAACAGTTGCTTTATTACCATTATGATAGGCTCATGCTCTTAGCTATCTAACCCTTGTTTGGCTTCTCAGTTGG----CTATAATGGGTTTTGATGGAATTTTGGATCATATCAA
s HiC_scaffold_1 95833144 1439 + 233722169 CCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCAGTTCC-GATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGT-TGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTAAGCGAAACTTATGACTGATACAATCATACAATATATTGGTTTGCATTGGCTTT--ATTGGTAGATAGGTTGATG--------------TTcacatggaaaaacaaagtgc------caAGGAAAGTTGGAttt---gaattaaagaaaacaaaattatttttctttccaaattttcaGTGTCACTATAAAGATATCTTG--TCTTAGCAGTTGGGAAATCCTTTAGTTCTTCCTTCTAATGGGACTTCATAACACTTTGAAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTAGAGATACTTTCTTTGGGAAAA-------TGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCT-------AGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatga---aaggggaagaataggcTCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATAT--------------CCTGCAATCCTTTACCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGCTCAACAATCCTTTGTATACTGTAAGTTCACAGCTGT----------------------------------GTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTCTCCTTTGTCTCTAGCAGATGTTGTCCT-GCATGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTTAATAAAGTACATTTTTTGTTGAACGGttgtgtatcttttt-cttttaaaact---cttattagaaatatg------taatttttgttgATTTCC-ATATTTGCTTAATTTCTAGTTTAGATTCCTCCTGTGGTTT------GAATTTGGGTTCATATCAA

a score=10393
s chr3           92398433 496 + 160039680 CCAATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAATGAACCT--GTGTTCCAAGTCTCAATCTTCCCTATATTG-ATAA-------CCTGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCC--------------------------------ATCCACCACAAAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCCTCTTGAAGCAGAAGTGGCCTCCT-----------CCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGACCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCCTCATAT
s HiC_scaffold_1 95905493 525 + 233722169 CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA-------AGGGAATATTGTAA--GCATGAGTA--GCAATGTGCCTTGGTATTGCgagtttc--tcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC-----ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTCAGG-TcatgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCT------TCATCCTTCCACCTGT

a score=9004
s chr3           92398433 467 + 160039680 CCAATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAATGAACCT--GTGTTCCAAGTCTCAATCTTCCCTATATTG-ATAA-------CCTGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCC--------------------------------ATCCACCACAAAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCC-----TCTTGA-----------------AGCAGAAGTGGCCTCCT-----------CCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGACCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGA
s HiC_scaffold_1 95898762 525 + 233722169 CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA-------AGGGAATATTGTAA--GCATGAGTA--GCAATGTGCCTTGGTATAGCgagtttc--tcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TCATGAAAAGGGAAGGAACTCTGGCTC-ACCCCCTTTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGA

a score=10492
s chr3           92398433 512 + 160039680 CCAATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAATGAACCT--GTGTTCCAAGTCTCAATCTTCCCTATATTG-ATAA-------CCTGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCC--------------------------------ATCCACCACAAAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCCTCTTGAAGCAGAAGTGGCCTCCT-----------CCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGACCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCC-----TCATATGCCTGTCATGATATCT
s HiC_scaffold_1 95891942 542 + 233722169 CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA-------AGGGAATATTGTAA--GCATGAGTA--GCAATGTGCCTTGGTATTGcgagtttt--tcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC-----ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAAGAGCCTTCT-------TCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTCCT

a score=9737
s chr3           92398433 496 + 160039680 CCAATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAATGAACCT--GTGTTCCAAGTCTCAATCTTCCCTATATTG-ATAA-------CCTGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCC--------------------------------ATCCACCACAAAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCCTCTTGAAGCAGAAGTGGCCTCCT-----------CCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGA---------CCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCCTCATAT
s HiC_scaffold_1 95925729 522 + 233722169 CCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGA-------AGGGAATATTGTAA--GCATGAGTA--GCAATGTGCCTTGGTATTGcgagtttt--tcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCC-----ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAA----------CACCATCAGGAGTCCTCAGTTcatgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCT------TCATCCTTTCACCTGT

a score=11508
s chr3           92398433 891 + 160039680 CCAATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAA---TGAACCTGTGTTCCAAGTCTCAATCTTCCCTATATTGATAACCTGT---GAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCC--------------------------------ATCCACCACAAAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCCTCTTGAAGCAGAAGTGGCCTCCT-----------CCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGACCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCC-----TCATATGCCTGTCATGATATCTGATAGAGAAGAATTTACGTGAGACTGCAATGCTGCTGCTGTCAGGGGGCCACTGAGAATGGTCCTTCTTCAGTGGTTCAATATCTCAAGATTACAGAGGGAAGACCAGAAAATGTCTCCTTAGTGTCCATAAAGGATATCTTA--AAATATCCCTATCACTTGGACAGGGTAGTTACCATTGTTGTTTCATTTACTGAATAAAGTATTGCTTTGT---TGATGGTATTCATGTTTTCTTACTTCTAACAGTTGCTTTATTACCATTATGATAGGCTCATGCTCT-------TAGCTATCTAACCCT--TGTTTGGCTTCTCAGTTGGCTATAATGGGTTTTGATGGAATTTTGGATCATATCAAGGAATaactattctcaacagtatagaacc
s HiC_scaffold_1 95931260 847 + 233722169 CCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGA-------AGGGAATACTGTAAGCATGAGTAGAAATGTGCCTTGGTATTGTGT---AAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC-----ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTCAGG-TcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCT------TCATCCTTTCAGCTGTAATCTGCCTCCAAGGATTTCT-------------------------------CTCTCCCATCCAGAGGAACTCTCA--------TCTCTCCCTTGGTCC--CATCCCATG----------------------ATGTCTCCTGAGCCTCTCT----GTTACCTGGGCAGGGATTTCTATCTCCT-----GGGAGATTAAAACTAAACTTTCACATCCTGATTAAAGTACAGTATTATTTGTGAGAGCAGACATATTTTCTTCCTACTAAAGTCAGCTATATTAGCAATACCgtatcattttgctttatttggatCTCTGTTTAATCATGAGGTCTGGCTCCCAAAAT----------TGTGTTGTCTGAATCTTGGGACATGTAAAG------TTAATCTCATCATTTCAAAGTC

a score=10650
s chr3           92398569 360 + 160039680 CCTGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCCATCCACCACA-----AAGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCCTCTTGAAGCAGAAGTGGCCTCCT-----------CCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGA---------CCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCCTCATAT
s HiC_scaffold_1 95912387 365 + 233722169 CTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC-----ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAA----------CACCATCAGGAGTCCTCAGTTcatgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCT------TCACCCTTTCACATAT

a score=23871
s chr3           92407088 1958 + 160039680 CTCtgtgtctgtgtgtgtgtgtgtgtgtgcatgcgtgtgcgtgcatgtcagtgtttgtgagcatacatgtgtctgatgtgtctgggcttgtgtgtgtgtgtgtgtatgcatgtatgtgtTTG-GGGGTCCTTTTGGAAGTTATCAGATAAATTTTAGTCACTGTGTACCA-----------CAAGGAATCTTCACATAGGTGATCTGTGAATGACTG------TGAGTCT-TCATGCTAAGCAAAAACATGCTTAGGACAGGTGCAATTTTATCTCCTTACTGTCATGATATTCAGTCTTGTGGTCATCTTTGGGGTGAGTGCAATTATATACCCCAAATATGTCATTTAATATGACAGTACTGAAGAGGGTCAA--GATAA----GACCCAAGGCCATCAGCCTCCTCTCTGAAGGACCTATATTATTTCCTAAGATGAACAGAAAAGTATCAAACCTGGGCAGGACAT------ATGACCTGT----------------CTCTGGGAACAGAGTTATCACAGGTGA---------TGCTGAAATTATGCCTATGGTCCCCTTTAATTTCCATCTTTCATCCCATAGG--------CAAGTTA------CACCTAAAA------------GACAGGAACATAAATGGGCC----AATGCACCATAGGATACCAATTAGTTGAAATAGTACAAAGAGGACACA----------------------AGTT-----------GAAATAGAAAGAAATAATGTCTTTAAT--------CAATAAAGAGAGCTT---------------AGA---CAACCAGT---------GTGATCAC--ACTGGATTTGAAGACAGAAG-----GGCTCACTGAGTCAC-AGGACTGAACAATG-------ATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCCTTCTATCAGTCACAAGTGCTTCCATT------AGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGCAG-ACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGTCTTAATGGTCTCTCTGTGGGCTGTAGTAAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTT-TGATCATGGCTTGGCTGCTACCTATCTAGCAGTCAGAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTTGAACATAGTACATTTATCTTTCATATGCATCATTTGGTGTTCTT-TGAAATGTCATATAACTTATGCAGGTATTAGACCTGAG-----------------ATTTTCCTTAGCTGTCCTTTATTGTACAAACTCAGACAACCTACTGTCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTT------GAGATTCCTCAGGGCACCAGAGCTTG--ACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAA--GACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCA-AGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGG---AATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACA--AGTCTCTATCAATCTTGGTGGGGA-----TCAGCCCTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCC---------------TTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACC-CAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGA-----GAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGAT
s HiC_scaffold_1 95832198 2025 + 233722169 ctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--gtgtgtgtaagtaagC------------------------TGTGAGTATGC-TGTATTCCTGTCTTGGTTTTCAATGTCC-----GAAGTGA---GAGAAGCATCAGT---TGTGTATCATACTCCATCACCAGAAACTCCTCACATAGCTAATCTGTAAATAACTGGATGTTTGAATTTACCATGTGAAACTGTGACATGACCAGGGC---TGC-------CTTCAATGCAGTCATTCAGTCCATTTGAATGGGAAATATAAGGAAGAGTATCAACGTGTAAGAAAACTGTGTTATCTGACACTATAATCCTT------TTCAACAGATAATTTTGAATagcagaaataagatatttctctAAGGATTTTTGATTCAGTC-----ATGAAAAGAAAAGGCTGA----TGAGGAAAATATTGAGTAATGTCCCTTTACTCTGCCCTTTATCCACTGGTGAGTGTACTATTCTATATGGACCTTGTAGTGATGACATCATGTGTAGA---CTCTGTGAATGTTAGGTTTGTTCCTGCAGGATGATGGCCAGAGTAGTTCTCCACCAGAAACCCTTTTCCTTTGTCAGGAGTAATGATAGTTCTGGGAGTGTACCTTGATGAAC---TCAGCAGAAATGATGCTGGGATGACTCAGTACTCCCAAAGATTCTGGAGCAGTTTTAAAATTCGAAAAACTGAAAGACAGAAAGTCTGTATTGTCCCAAATAAGGAAGACAGCATTTCAGTGACAGTTACAGAATCCAACCAATTATCCGCCAGTCATCATTAACTGAAACTGAATACTAAAGTGGTAGGGTCTCTGGGTCACCAGGATTTAACATTGGCTGGAGATGATg-----aaacaatgtattttttatttt-taggggtCCTGTCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAA------AACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCA-GTTCCGATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCT-GTTGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTA--AGC--GAAACTTATGACTGATACAATCATACAATATA-----------------TTGGTTTG--------------------CATTGGCTTTATTGGTAGATAGGTTGATGTTcacatggaaaaacaaagtgccaAGGAAAGT--TGGAtttgaattaaagaaaacaaaattatttttctttccaaattttcaGTGTCACTATAAAGATA--------TCTTGTCTTAGCAGTTGGGAAATCCTTTAGTTCTTCCTTCTAATGGGACTTCATAACACTTTGAAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTA-GAGATACTTTCTTTGGGAAAAT--GGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCT--CTAGGAG-----AAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTT------CTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCATATA-CTACTTTCAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCC------ACAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaatagg--------cTCTTCTATTTCTGTTGCAGCACCTTA-GTATCCTCTTCAAAAACTATCATATAT

a score=23157
s chr3           92407436 1628 + 160039680 AGGGTCAAGATAAGACCCAAGGCCATCAGCCTCCTCTCTGA-AGGACCTATATTATTTCCTAAGATGAACAGAAAAGTATCAAACCTGGGCAGGACATATGACCTGTCTCTGGGAACA---GAGTTATCACAGGTGATGCTGAAATTA-TGCCTATGGTCCCCTTTAATTTCCATCTTTCATCCCATAGGCAAGTTACACCTAAAAGACAGGAACAT--AAATGGGCCAATGCACCATAGGATACCAATTAGTTGAAATA--------------------------GTACAAAGAGGACACAAGTTGAAATAGAAAGAAATAATGTCTTTAATCAATAAAGAGAGC-TTAGACAACCAGTGTGA---------------TCACAC--------------TGGATTTGAAGACAGAAGGGCTCACTGAGTCACAGG-ACTGAA--CAATGATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCC------TTCTATCAGTCACAAGTGCTTCCATTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGT--CTTAATGGTCTCTCTGTGGGCTGT--AGTAAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTT-TGATCATGGCTTGGCTGCTACCTATCTAGCAGTCAGAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTTGAACAT---------------------------------------------------------AGTACATTTATCTTTCATATGCATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGA--CCTGAGATTTTCCT---TAGCT--------GTCCTTTATTGTACAAACTCAGACAACCTACTGTCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTG--ACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTG---GGGATCAGCC--CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCA
s HiC_scaffold_1 95890826 1624 + 233722169 AGTGGCAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactca--caaggcagacagGCCGTGCCTTATAACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGAACTATGTACAGTGAAGAGA---GAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACATCAAACAGTTGTTAAATACAAAGATGTCAAAAG-----ATAGGAGGGGATTATTGTCCTAAGAAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCTGAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCA-GGTTTTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCAC-----TTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATG--TCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACT----GATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACA--ATTTGGGGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGGGCGCAGTGA-------TGTTCTCAGGGGATAATGA-TGAGA------GGGATTGAGT--GAGATGC-TCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTG-------------------------AGAAAATGTTTTCCCC-----------------------------------AAGACTG-AGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATG-----------------AGTAGCAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGC------------CATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT----TCTTCTCTTCAAAGTGTTTCATGAGCA-AGAAGAGCCTTCTTCA

a score=22347
s chr3           92407487 1598 + 160039680 TTATTTCCTAAGATGAACAGAAAAGTATCAAACCTGGGCAGGACATATGACCTGTCT---CTGGGAACA---GAGTTATCACAGGTGATGCTGAAATTATGCCTATGGT-CCCCTTTAATTTCCATCTTTCATCCCATAGGCAAGTTACAC-CTAAAAGACAGGAACAT--AAATGGGCCAATGCACCATAGGATACCAATTAGTTGAAATAGTACAAAGAGGACACA-AGTT--------------------GAAATAGAAAGAAATAATGTCTTTAATCAATAAAGAGAGC--TTAGACAACCAGTGTGA---------------TCACACTG---------GATTTGAAGA-------CAGAAGGGCTCACTGAGTCACAGG-ACTGAAC--AATGATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCC------TTCTATCAGTCACAAGTGCTTCCATTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGCAGAC-TCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGT--CTTAATGGTCTC-----TCTGTGGGCTGTAGT---AAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTTTGATCATGGCTTGGCTGCTACCTATCTAGCAGTCA--GAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTT---------------------------------------------------------GAACATAGTACATTTATCTTTCATATGCATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGACC--TGAGATTTTCCTTAG-----------CTGTCCTTTATTGTACAAA--------CTCAGACAACCTACTGTCATGATATAGA--GAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTGACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTG---GGGATCAGCC--CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCACATAGCACCTCCTTCTACATG
s HiC_scaffold_1 95924666 1584 + 233722169 TTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCA--CAGGGCA---GACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCA-GCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGAC---CTACATACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGCACAACAAAGACATCAAACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTC--TGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCA-GGTTTTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCAC-----TTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCT-CTCAGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATTTCATGT--------TTGTGAGATGGATGTTACTT------CAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACA--ATTTGTGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGATAAACC----TGACAGAGATTGAGTGAGATGCTCAGGACTT----TTGAACTT-----------------GTGACTGCCT----------------TTTGTG-------------------------AGAAAATGTTTTCCCC-----------------------------------AAGACTG-AGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATG-----------------AGTAGCAATGTGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGC------------CATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTC-AGTTcatgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT----TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCA---------TCCTTTCACCTG

a score=20584
s chr3           92407784 1481 + 160039680 CAGAAGGGCTCACTGAGTCACAGG-ACTGAA--CAATGATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCC------TTCTATCAGTCACAAGTGCTTCCATTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGT--CTTAATGGTCTCTCTGTGGGCTGT--AGTAAGTTTTGAAGAAGTAAGTTTTT-TGAATATGGTTTTGATCATGGCTTGGCTGCTACCTATCTAGCAGTCA--GAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTTGAACAT---------------------------------------------------------AGTACATTTATCTTTCATATGCATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGA--CCTGAGATTTTCCT---TAGCTGTC-CTTTATTGTACAA---ACTCAGACAACCTACTGTCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTG--ACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTG---GGGATCAGCC--CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCACATAGCACCTCCTTCTACATGCCAGTGATTATCTCTGATAGGGAAGGCATTAACCTGAGATGATAA--TCCTGCTGCTGTAAAGGGCCTGCAGAGAATGATCCT-TCTTGCATGGTTCAGT---AGACCATTTTTCAAATCTCTCTGTCACTTTGGCAAGCTAGATCTCACTGTTTTTTCATTTCCTGAATAAAGTACCGTCTTGTT
s HiC_scaffold_1 95911559 1336 + 233722169 CAGGTGGGTTC--TGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTT--TTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCAC-----TTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTG--TCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACT-TTATGTTTGTGGGATGAATGTTACTT------CAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACA--ATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTGCCCAGTAAA---GTTCTCAAGGGATAAAGA-TGACA------GGGATTGAGT--GAGATGC-TCAGGACTTTTGAACTTGTGACTGCC----------------CTTTGTG-------------------------AGAAAATGTTTTCCCC-----------------------------------AAGACTG-AGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATA------------AAGTCTTAAGGAG---------------------GAGTAGCAATGTGCCTtggtattgcatgtttttcttctttttagtacATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA---------------------------------------------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTC-AGTTcatgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttct-tcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCAC---------CCTTTCACATA-----------------------------TAATCTGCCTCCATGGTTTCTTGTCTCCCTACAGGG--------GAACTCTCATCTCTCCCTTGGTCCCGTCCCATAATGTCTTCTGAGCCTCTCTGTCACCTGGGAAAT-----TATAACTAAACTTTCACATCCTGAATAAAGTATTATATTTTT

a score=22756
s chr3           92407784 1280 + 160039680 CAGAAGGGCTCACTGAGTCACAGG-ACTGAA--CAATGATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCCTTCTATCAGTCACAAGTGCTTCCA-TTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGT--CTTAATGGTCTCTCTGTGGGCTGTAGTAAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTT-TGATCATGGCTTGGCTGCTACCTATCTAGCAGTCAGAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTTGAACATAGTACATTTATCTTTCATATG--------------------------------------------------------CATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGA--CCTGAGATTTTCCT---TAGCT--------GTCCTTTATTGTACAAACTCAGACAACCTACTGTCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTG--ACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTG---GGGATCAGCC--CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAG---------CCT------TGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCA
s HiC_scaffold_1 95898050 1247 + 233722169 CAGGTGGGTTC--TGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCA-GGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTG-AATATAATCTGAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACT----GATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATC-TACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCACACAATTTGGGGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattctttatgtgtagCTATTGCTCTGTTCTCTAATGTGCCCAGT--GACGTTCTCAGGGGATAATGATGAGAG------------GGATTGAGT--GAGATGC-TCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTG-------------------------AGAAAATGTTTTCCCC-----------------------------------AAGACTG-AGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATG-----------------AGTAGCAATGTGCCTTGGTATAGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCC------ACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTCATGAAAAGGGAAGGAACTCTGGCTCACCC-CCTTTATGGCAGCACCT----TCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTA

a score=22905
s chr3           92407784 1301 + 160039680 CAGAAGGGCTCACTGAGTCACAGG-ACTGAA--CAATGATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCC------TTCTATCAGTCACAAGTGCTTCCATTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGT--CTTAATGGTCTCTCTGTGGGCTGT--AGTAAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTT-TGATCATGGCTTGGCTGCTACCTATCTAGCAGTCA--GAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTTGAACAT---------------------------------------------------------AGTACATTTATCTTTCATATGCATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGA--CCTGAGATTTTCCT---TAGCT--------GTCCTTTATTGTACAAACTCAGACAACCTACTGTCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTG--ACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTG---GGGATCAGCC--CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCACATAGCACCTCCTTCTACATG
s HiC_scaffold_1 95904779 1238 + 233722169 CAGGTGGACTC--TGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCAC-----TTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATG--TCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTT------CAGTGATGGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACA--ATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTGCCCAGT--GACGTTCTCAGGGGATAATGATGAGAG------------GGATTGAGT--GAGATGC-TCAGGACCTTTGAACTTGTGACTGCCT----------------TTTGTG-------------------------AGAAAATGTTTTCCCC-----------------------------------AAGACTG-AGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGCATG-----------------AGTAGCAATGTGCCTTGGTATTGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGC------------CATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTC-AGGTcatgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCT-TCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCA---------TCCTTCCACCTG

a score=20662
s chr3           92407818 1246 + 160039680 GATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCC------TTCTATCAGTCACAAGTGCTTCCATTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGT--CTTAATGGTCTCTCTGTGGGCTGT--AGTAAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTT-TGATCATGGCTTGGCTGCTACCTATCTAGCAGTCA--GAAATTTAGCAATGGATCTACTAGTCAACTTAGACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTT---------------------------------------------------------GAACATAGTACATTTATCTTTCATATGCATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGACC--TGAGATTTTCCT---TAGCTGT----CCTTTATTGTACAAACTCAGACAACCT--------ACTGTCATGATATAGA--GAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTGACTGCCTATCTTGAAAGTGTTGCTTTGTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTG---GGGATCAGCC--CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCA
s HiC_scaffold_1 95930584 1184 + 233722169 GATGGGATTCTGGAGCAGGTTTTTTATTACT-TGCA-AGTACCTGTCA-GCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCAC-----TTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTG--TCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTT------CAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACA--ATTTGGGGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTGCCCAGTGAAGTTCTCAGGGGATAATCATGACAGGGATTGAGTGAGATGCTCAGGACTT----TTGAACTT-----------------GTGACTGCAT----------------TTTGTG-------------------------AGAAAATGTTTTCCCC-----------------------------------AAGACTG-AGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAAGGGAATACTGTAAGCATGAGTA------------GAAATGTGCCTTGGTATTGTGT---AAGTTCTTCT---TTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGC------------CATGCCCACCTCC------ACAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT----TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCA

a score=3957
s chr3           92408734  98 + 160039680 AGTGCAAGCAGCCTTGCCAGCCTCCA------CCTGTG---TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCA
s HiC_scaffold_1 95899009 107 + 233722169 AGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA

a score=4241
s chr3           92408743 89 + 160039680 AGCCTTGCCAGCCTCCA------CCTGTG---TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCA
s HiC_scaffold_1 95833962 98 + 233722169 AGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA

a score=4746
s chr3           92408766 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925990 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=4728
s chr3           92408766 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905754 122 + 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4859
s chr3           92408766 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892203 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=4746
s chr3           92408766 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931520 122 + 233722169 TGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5581
s chr3           92408766 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC---------TGAGTCATGTCCCCCT------------CCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899023 149 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6003
s chr3           92408766 128 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC----------------TGAGTCATG-----TCCCCCTCCCTCATACCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCC---TGCCAACAGAAGTGCCCCCC

a score=3577
s chr3           92408800 102 + 160039680 CTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95892183  90 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGC------------CATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=3586
s chr3           92408800 102 + 160039680 CTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95925970  90 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGC------------CGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC

a score=3536
s chr3           92408800 52 + 160039680 CTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCC
s HiC_scaffold_1 95912495 52 + 233722169 CTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCC

a score=4218
s chr3           92408800 103 + 160039680 CTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCC---------------TTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACC
s HiC_scaffold_1 95833947 118 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=6295
s chr3           92416569 348 + 160039680 AAACTTCAGACTCCCTGTTTTAAAGATGCTATTTTCTCCTAGCACCATAACTGTCGA---TTTGAACAGAGACATTTTCTT-------ATTG-ATGAAACAAAA------------------TGTTGAAATAAA-------AGGAAAACTCATGAACTC------------CTGAGGC---AGAATT--------GGAATTGATGACTAGCTCTGATATTCCATAA--TTTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTGTACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTGTTATAA
s HiC_scaffold_1 95833586 404 + 233722169 AAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCA--ATTAATATTATCAGATTTTTTAGTAGAGATACTTTCTTTGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCT--GGGGAAATCCCTAATTCTGAACATTGCCATATACTA-CTTTCAGATCCTGAGA-TACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGA

a score=5711
s chr3           92416626 291 + 160039680 TTTGAACAGAGACATTTTCTT----ATTGATGAAACAAAATGTTGAAATAAAAG-GAAAACTCATGAACTCCTGAG---GCAGAATTGGAATTGATGACTAGC-------TCTGATATTCCATAATTTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTG---------------------------TACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTGTTATAA
s HiC_scaffold_1 95891922 331 + 233722169 TTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGC-ATGAGTAGCAATGTGCCTTGGTATTGcg--agtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGA

a score=6044
s chr3           92416626 285 + 160039680 TTTGAACAGAGACATTTTCTT----ATTGATGAAACAAAATGTTGAAATAAAAG-GAAAACTCATGAACTCCTGAGGCAGAATTG--GAATTGATGACTAG-------CTCTGATATTCCATAATTTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTGTACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTG
s HiC_scaffold_1 95931240 297 + 233722169 TTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAAGGGAATACTGTAAGCATGAGTAGAAATGTGCCTTGGTATTGTGTAAGTTCTT---CTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATG

a score=6334
s chr3           92416626 285 + 160039680 TTTGAACAGAGACATTTTCTT----ATTGATGAAACAAAATGTTGAAATAAAAG-GAAAACTCATGAACTCCTGAG---GCAGAATTGGAATTGATGACTAGC-------TCTGATATTCCATAATTTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTGTACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTG
s HiC_scaffold_1 95925709 298 + 233722169 TTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGC-ATGAGTAGCAATGTGCCTTGGTATTGcg--agtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATG

a score=7176
s chr3           92416626 291 + 160039680 TTTGAACAGAGACATTTTCTT----ATTGATGAAACAAAATGTTGAAATAAAAG-GAAAACTCATGAACTCCTGAGGCAGAATTGGAATTGATGACTAGCTCTGATATTCCATAATTTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTGTACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTGTTATAA
s HiC_scaffold_1 95912250 288 + 233722169 TTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAGTCTTAAGGAGGAGTAGCAATGT-------GCCTtggtattgcatgtttttct--tctttttagtacATGAATTCCTTCTTCTGAACATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGA

a score=6016
s chr3           92416626 285 + 160039680 TTTGAACAGAGACATTTTCTT----ATTGATGAAACAAAATGTTGAAATAAAAG-GAAAACTCATGAACTCCTGAG---GCAGAATTGGAATTGATGACTAGC-------TCTGATATTCCATAATTTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTGTACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTG
s HiC_scaffold_1 95905473 298 + 233722169 TTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGC-ATGAGTAGCAATGTGCCTTGGTATTGCg--agtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATG

a score=5989
s chr3           92416626 285 + 160039680 TTTGAACAGAGACATTTTCTT----ATTGATGAAACAAAATGTTGAAATAAAAG-GAAAACTCATGAACTCCTGAG---GCAGAATTGGAATTGATGACTAGCTCTGATATTCCATAAT--------TTTTTAATTCTTTCTCTATGGGAATCACTTGTT-GGAGAAATGTCACATGTTTTCTTTCACATCCTGGGACTGCAGCACTATGTTTTACCAACAATAACAGTTCCCTCTGACTTGCAAGCACCCTCCTGTGTACCTACCCCTACAGTGTCCAGAGCCCTGTCCTCTCTCAAAGTG
s HiC_scaffold_1 95898742 298 + 233722169 TTTGTGAGAAAATGTTTTCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAGGGAATATTGTAAGC-ATGAGTAGC---AATGTGCCTTGGTATAGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATG

a score=20956
s chr3           92417550 1637 + 160039680 CAGGATAAGGCCCAAGGCTGCCAGCCTCCCCTTGGAAGGGCACATATTTTTTAT---GGTTCACA-AAGAAGAATCAAACCCAGGCAGGAGACATGATCTATCTCTTCAACA---AGGTTGTGAAAGATGATGCT-GAAATAACATCCATGGTCCCCTTTAATT-CTATTCTTTCAGCCCATACGTAAATACCTAAAAGCAAGAATGT--AAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAA---------CAACTAG------GACACAA----TTTGTAATACAGAAAAAAAATATGTTTGTAATCAAAAAAGAAAAC-TTAGACAACCAGTAAGAAAAC--TCCACACTTT-GTGCATCTATCAGATCTTACTGAAACTG--TAAAAAGGGGGATTACCTGCTGAGTCACA-GCACTGAAT-CAGTGATG---TCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT----------TTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCTTTATGGTCTTCCTATGTGCTATAGTCAAT----TTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTT-TCATAGGATGAACTGTACCT-----------ACCTAGCAGTCAGAAATTTGGCAATAGATAAATAACTT---TTCATTTTATTAGGTAGGTGGTTGAACAGC---------------------------------------------------------GTACATTTCTCTTTCATATACATTTATGGTGTTCTTTAAAAGTCATATACCTTAGCA-GATATTAGAACCTGGGATTTTCCTCACATG-----TACTTTACTGTCTGAC---CCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTT---TGTTCAGGACACCAGAACTTGAGACTTCTTGATGATGTTTCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCAAGTCTC-CATCTATCTACTCTATTGATTACCCTT---GAACACT--CTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAACCTGTAATGGATTCAAAAGAATCTTCTCCAACATTCC
s HiC_scaffold_1 95890831 1626 + 233722169 CAAGAGGTGGCCCAGTGAACATAGTACCCACTATGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGActcaaactcacaaggcagacagGCCGTGCCTTAT-AACACGTGGTTTTTTAGAGAAGGAACTAGAACCAGTGCACAGAGTCATTTTagatttctccttttctctaccAGAACTATGTACAGTGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATATAGCCATTGATTTAAGTACAAACAACACATCAAACAGTTGTTAAATACAAAGATGTCAAAAGATAGGAGGGGATTATTGTCCTAAGAAAGACAGAGAGCCTTTGAGAACTGGTTGGAAAAACATCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCTGAGATGGACT-----CTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTTTTCACTACTT-TGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCCATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGA---------AGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCT-TGATGTCCTCAGTTGTT-TGTTGAATATAATCTGAGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCATACAATTTGGGGTTCCTTTCGAAGGGGTATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGGGCGCAG-TGATGTTCTCAGGGGATAA---TGATGAGAGGGA---------------TTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCT---------TTTGTGAGAAAA----------TGTTT---------------------------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAG-------GGAATATTGTAAGCATGAGTAGCAATG---TGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCTTG---TAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGG----------------TTAAAACT----------CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCAAGAAGAGCCTTCTTCATCCTTTC

a score=22564
s chr3           92417550 1640 + 160039680 CAGGATAAGGCCCAAGGCTGCCAGCCTCCCCTTGGAAGGGCACATATTTTTTAT---GGTTCACA-AAGAAGAATCAAACCCAGGCAGGAGACATGATCTATCTCTTCA-ACAAGGTTGTG-AAAGATGATGCTGAAATAACATCCATGGTCCCCTTTAA---TTCTATTCTTTCAGCCCATACGTAAATACCTAAAAGCAAGAATGT--AAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAACAACTAGGACA-----CAATTTGTAA-TACAGAAA-----AAAAATATG------TTTGTAATCAAAAAAGAAAA------CTTAGACAACCAGTAAGAAAA--CTCCACACTTT-GTGCATCTATCAGATCTTACTGAAACTG--TAAAAAGGGGGATTACCTGCTGAGTCACA-GCACTGAAT-CAGTGATG---TCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT----------TTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCTTTATGGTCTTCCTATGTGCTATAGTCAAT----TTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTT-TCATAGGATGAACTGTACCTACCTAGCAGTCA--GAAATTTGGCAATAGATAA------ATAA------------CTTTTCATTTTATTAGGTAGGTGGTTGAACAGC---------------------------------------------------------GTACATTTCTCTTTCATATACATTTATGGTGTTCTTTAAAAGTCATATACCTTAGCA-GATATTAGAACCTGGGATTTTCCTCACATG-----TACTTTACTGTCTGAC---CCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTT---TGTTCAGGACACCAGAACTTGAGACTTCTTGATGATGTTTCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCAAGTCTC-CATCTATCTACTCTATTGATTACCCTT---GAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAA-CCTGTAATGGATTCAAAAGAATCTTCTCCAACATTCCTCC
s HiC_scaffold_1 95904383 1632 + 233722169 CAAGAGGTGGCCCAGTGAACATAGTACCCACTGTGAGAGGAAGTTGTTTGTTACCTCTGTTCATAGAAAAAGACTCAAACTCACAAGGCTGACCGGCCCTGCCCTGTGACACATGGTTTTTTAGAGATGGAACTAGAACCA-GCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATGTACAGTGAAGAGAGAATATGAAAATGGACTTAAGTACCATAATGTAGCCATCAATGTAAGTG-----ACCAAGACATCAAAcagtttttaaattcaaagatGTCAAAAAGTAGGAGGGGATTATTGTTCAAAGAAACATAGAGAGCCTTTGAGAACAGGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCTCAGGTGGACT-----CTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGA---------AGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCT-TGATGTCCTCAGTTGTT-TGTTGAATATAATCTGAGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTT------CAGTGATGGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACAATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGTGCCCAG-TGACGTTCTCAGGGGATAA---TGATGAGAGGGA---------------TTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCT---------TTTGTGAGAAAA----------TGTTT---------------------------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAG-------GGAATATTGTAAGCATGAGTAGCAATG---TGCCTTGGTATTGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCA-TATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTC--------------------------CAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTC-AGGTcatgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTCCACC

a score=21275
s chr3           92417576 1611 + 160039680 TCCCCTTGGAAGGGCACATATTTTTTAT---GGTTCACA-AAGAAGAATCAAACCCAGGCAGGAGACATGATCTATCTCTTCAACAAGGTTGTGAAAGATGATGCTGAAATAACATCCATGGTCCCCT-TTAATTCTATTCTTTC---AGCCCATACGTAAATACCTAAAAGCAAGA--ATGTAAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAACAA----------------CTAGGACACAATTTGTAATACAGAAAAAAAATATGTTTGTAATCAAAAAAGAAAA-----CTTAGACAACCAGTAAGAAAA--CTCCACACTTT-GTGCATCTATCAGATCTTACTGAAACTG--TAAAAAGGGGGATTACCTGCTGAGTCACA-GCACTGAATC-AGTGATG---TCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT----------TTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCT-TTATGGTCTTCCTATGTGC------TATAGTC---AATTTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTTTCATAGGATGAACTGTACCTACCTAGCAGTCA--GAAATTTGGCAATAGATAAA------TAA------------CTTTTCATTTTATTAGGTAGGT---------------------------------------------------------GGTTGAACAGCGTACATTTCTCTTTCATATACATTTATGGTGTTCTTTAAAAGTCATATACCTTAG-CAGATATTAGAACCTGGGATTTTCCTCACATGTACTTTACTGTCTGACCCCAGATAACCTTCTGGGATGATATAGTTAATAAA----AAGGAGGGCATGAATTGGTTTTGAGTTTGTTCAGGACACCAGAACTTGAGACTTCTTGATGATGTTTCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCAAGTCTC-CATCTATCTACTCTATTGATTACCCTT---GAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAACCTG-TAATGGATTCAAAAGAATCTTCTCCAACATTCC
s HiC_scaffold_1 95911190 1556 + 233722169 TCCTCTGTGAGAGGCAAGTGTTTGTTTCCTCTGTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTTCCCTGTCACATGTGGTTTATTAGATGGAACGAGAACCA-GCCCACAGTGTCATCTTAGATCTCTCCTTTCTCTAGC--AGACCTACATACTGTGAAGAGAGATTATGAAAATGGACTTAAGTACCATAATGTAGCCATCACTTTAAGCACAACAAAGACATCAAACGGTCATGAGAATCAAAGATGTCAAAAAGTAGGAGGGCATTACTGTC-CCAAGAAAGATAGAGATCCTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCCCAGGTGGGTT-----CTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTT--TTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGA---------AGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACT--------TTATGTTTGTGGGATGAATGTTACTT------CAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGGgcttcatttccttttgttgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTCAAAGGGGTATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTGCCC---------AGTAAAGTTCTCAAGGGATAAAGATGACAGGGATTGAGTGAGA---TGCTCAGGACTTTTGAACTTGTGACTGCCC---------TTTGTGAGAAAA----------TGTTT---------------------------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCATAAAGTCTTAAGGAGGAGTAG-----CAATGTGC---------------------CTtggtattgcatgtttttcttctttttagtacATGAATTCCTTCTTCTGAACATTGCTG-TATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATAACT--------------------------CCAAAGTGCCCTGAGCCGTGCCCACCT---------------------------CCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTC-AGTTcatgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTTTC

a score=21755
s chr3           92417577 1610 + 160039680 CCCCTTGGAAGGGCACATATTTTTTAT---GGTTCACA-AAGAAGAATCAAACCCAGGCAGGAGACATGATCTATCTCTTCA-ACAAGGTT-GTGAAAGATGATGCTGAAATAACATCCATGGTCCCCTTTAATTCTATTCTTTCAGCC--CATACGTAAATACCTAAAAGCAAGA--ATGTAAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAACAACTAGGACACAA------TTTGTAATACAGAAA-----AAAAATATGTTTGTAAT-------CAAAAAAGAAAA-----CTTAGACAACCAGTAAGAAAACTCCACACTTT---GTGCATCTATCAGATCTTACTGAAACTG--TAAAAAGGGGGATTACCTGCTGAGTCACA-GCACTGAAT-CAGTG-ATG---TCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT----------TTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCT-TTATGGTCTTC--CTATGTGCTATAGTCAATTTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTT-TCATAGGATGAACTGTACCTACCTAGCAGTCA--GAAATTTGGCAATAGATAAA---------------TAACTT---TTCATTTTATTAGGTAGGT---------------------------------------------------------GGTTGAACAGCGTACATTTCTCTTTCATATACATTTATGGTGTTCTTTAAAAGTCATATACCTTAG-CAGATATTAGAACCTGGGATTTTCCTCACATG-----TACTTTACTGTCTGAC---CCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTTTGTTCAGGACACCAGAACTTGAGACTTCTTGATGATGTTTCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCA-GATGTTCCAAGTCTCCATCTATCTACTCTATTGATTACCCTT---GAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAACCTGTAATGGATTCAAAAGAATCTTCTCCAACATTCC
s HiC_scaffold_1 95930177 1598 + 233722169 CCTCTGTGAGTGGCAAGTGTTTGTTTCCTCTGTTCATACAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGAACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTAGCAGACCTACATACTGTGAAGAGAGACTATGAAAATGGACTTAAGTACCAAAATGTAGCCATCAATTTAAGC---ACAATAAAGACATCAAACAGTCTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTGAGAACCTGTTGGAAAAACCTTCAAATTCCCACACAACCATCAGGTA--AATGAAACAGACTGCTCCGGTGGACT-----CTGATTCACAAGCAGTTAATGCAGTGGATGGGATTCTGGAGCAGGTTTTTT---ATTACTTGCAAGTACCTGTCAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGA---------AGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCT-GAGACAGCAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTT------CAGTGATGGAAACTTAAGTTTAGGTAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAATGAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTAAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCTAATGTGCCCAG-TGAAGTTCTCAGGGGATA------------ATCATGACAGGGATTGAGTGAGA---TGCTCAGGACTTTTGAACTTGTGACTGCAT---------TTTGTGAGAAAA----------TGTTT---------------------------------------------------TCCCCAAGACTGAGGAAGCAGGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAAGAAG-------GGAATACTGTAAGCATGAGTAG----AAATGTGCCTTGGTATTGTGTAAGTTCTTCTTTTCAGTACATGAATTCCTTCTTCTGAACATTGCTG-TATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTC--------------------------CAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCTTCTTCT--CTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTTTC

a score=23868
s chr3           92417605 1585 + 160039680 GTTCACA-AAGAAGAATCAAACCCAGGCAGGAGACATGATCTATCTCTTCA-ACAAGGTT-GTGAAAGATGATGCTGAAATAACATCCATGGTCCCCTTTAATTCTATTCTTTCAGCC--CATACGTAAATACCTAAAAGCAAGAATGT--AAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAACAACTAGGACACAA------TTTGTAATACAGAAA-----AAAAATATGTTTGTAAT-------CAAAAAAGAAAA------CTTAGACAACCAGTAAGAAAA--CTCCACACTTT-GTGCATCTATCAGATCTTACTGAAACTG--TAAAAAGGGGGATTACCTGCTGAGTCACA-GCACTGAAT-CAGTGATG---TCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT----------TTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCT-TTATGGTCTTCCTATGTGC------TATAGTC---AATTTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTTTCATAGGATGAACTGTACCT-----------ACCTAGCAGTCAGAAATTTGGCAATAGATAAATAACTT---TTCATTTTATTAGGTAGGT---------------------------------------------------------GGTTGAACAGCGTACATTTCTCTTTCATATACA-TTTATGGTGTTCTTTAAAAGTCATATACCTTAG-CAGATATTAGAACCTGGGATTTTCCTCACATG-----TACTTTACTGTCTGAC---CCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTT---TGTTCAGGACACCAGAACTTGAGACTTCTTGATGATGTTTCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCAAGTCTC-CATCTATCTACTCTATTGATTACCCTT---GAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAACCTGTAATGGATTCAAAAGAATCTTCTCCAACATTCCTCC
s HiC_scaffold_1 95924677 1571 + 233722169 GTTCATAGAAAAAGACTCAAACTCACAGGGCAGACCTGCCCTGCCCTGTCACATGTGGTTTGTTAGAGATGGCACTAGAACCAGCTCACAGTGTCATTTTAGATCTCTCCTTTTCTCTGGCAGACCTACATACTGTGAAGAGAGAATATGAAAATGGACTAAAGTACCAAAATGTAGCCATCAATTTAAGC---ACAACAAAGACATCAAACAGTTTTGAGATTCAAAGATGTCAAAAAGTAGGAGGGGATTATCGTCCCAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCCCAGGTGGGTT-----CTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGA---------AGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTC-AGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATT--------TCATGTTTGTGAGATGGATGTTACTTCAGTGATGGAAACTTAAGACTAGGCAAAATGATACAATATTATGagcttcatttccttttgttgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCAATACAATTTGTGGT-TCCTTTCAAAGGGGTATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTGCTCTGTTCTCTAATGTGCCCAG-TGACGTTCTCAGGGGATAAACCTGACAGAGA------------------TTGAGTGAGATGCTCAGGACTTTTGAACTTGTGACTGCCT---------TTTGTGAGAAAA----------TGTTT---------------------------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAG-------GGAATATTGTAAGCATGAGTAGCAATG---TGCCTTGGTATTGcgagtttttcttcttttcagtacATGAATTCCTTCTTCTGAACATTGCCA-TATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACT--------------------------CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTC-AGTTcatgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCTTCTTCTCC--TCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTTTCACC

a score=23464
s chr3           92417605 1545 + 160039680 GTTCACA-AAGAAGAATCAAACCCAGGCAGGAGACATGATCTATCTCTTCA-ACAAGGTTGTG-AAAGATGATGCTGAAATAACATCCATGGTCCCCTTTAA---TTCTATTCTTTCAGCCCATACGTAAATACCTAAAAGCAAGAATGT--AAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAACAACTAGGACA-----CAATTTGTAA-TACAGAAA-----AAAAATATG------TTTGTAATCAAAAAAGAAAA------CTTAGACAACCAGTAAGAAAA--CTCCACACTTT-GTGCATCTATCAGATCTTACTGAAACTG--TAAAAAGGGGGATTACCTGCTGAGTCACA-GCACTGAAT-CAGTGATG---TCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT----------TTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGT--CTTTATGGTCTTCCTATGTGCTATAGTCAATTTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTT-TCATAGGATGAACTGTACCTACCTAGCAGTCAGAAATTTGGCAATAGATAA------ATAA------------CTTTTCATTTTATTAGGTAGGTGGTTGAACAGC---------------------------------------------------------GTACATTTCTCTTTCATATACATTTATGGTGTTCTTTAAAAGTCATATACCTTAG-CAGATATTAGAACCTGGGATTTTCCTCACATGTA-------CTTTACTGTCTGAC---CCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTT---TGTTCAGGACACCAGAACTTGAGACTTCTTGATGATGTTTCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCAAGTCTC-CATCTATCTACTCTATTGATTACCCTT---GAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCA-CCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAA
s HiC_scaffold_1 95897712 1554 + 233722169 GTTCACAGAAAAAGActcaaactcacaaggcagaCCGGCCCTGCCCTGTGACACAAGGTTTTTTAGAGATGGAACTAGAACCA-GCCCACAGTGTCATTTTagatttctccttttctctaccAGAACTATGTACAGTGAAGAGAGAATATGAAAATGGCCTTAAGTACCGTAATGTAGCCATCAATTTAAGTG-----ACCAAGACATCAAAcagtttttaaattcaaagatGTCAAAAAGTAGGAGGGGATTATTGttcaaagaaagacagagagccTTTCAGAACAGGTCGGAAAAACCTCCAAATTCCCACACAGCCATCAGGTA--AATGAAACAGACTGCTCAGGTGGGTT-----CTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTTTTTACTACTT-TGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGA---------AGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTGAATATAATCT-GAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGA-TGT---TACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCCACACAATTTGGGGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaatt--ctttatgtgtagCTATTGCTCTGTTCTCTAATGTGCCCAG-TGACGTTCTCAGGGGATAA---TGATGAGAGGGA---------------TTGAGTGAGATGCTCAGGACCTTTGAACTTGTGACTGCCT---------TTTGTGAGAAAA----------TGTTT---------------------------------------------------TCCCCAAGACTGAGGAAGCAGGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAAGAAG-------GGAATATTGTAAGCATGAGTAGCAATG---TGCCTTGGTATAGCgagtttctcttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCA-TATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTCATGAAAAGGGAAGGAACTCTGGCTCACCCCC-TTTATGGCAGCACCT---TCTTCTCTTCAAA

a score=21902
s chr3           92417805 1791 + 160039680 AATTTGTAATACAGAAAAAAAATATGTTTGTAAT----CAAAAAAGAAAACTTAGACAAC----------CAGTAAGAAAACTCCACACTTTGTGCATCTATCAGATCTTACTGAAACTGTAAA---AAGGGGGATTACCTGCTGAGTCAC--------AGCACTGAATCAGTGATGTCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAG---TTCTATAAAGAGGTCCTTGGCTGCATCGCTTTGTATTC-CAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCTTTATGGTCTTCCTATGTGCTATAGTCAATTTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTT-TCATAGGATGAACTGTACCTACCTAGCAGTCAGAAATTTGGC-AATA---------GATAAATAACTTTTCATT-------TTATTAGGTAGGTGGTTG------------AACAGCGTAC-------------------------------------ATTTCTCTTTCATATACATTTATGGTGTT-CTTTAAAAGTCATATACCTTAGCAGATATTAGAACCTGGGATTTTCCTCACATGTACTTTACTGTCTGACCCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTTTGTTCAGGACACCAGAACTTGAGACT-----TCTTGATGATGTTTCTGT-GTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAATGCAGGATTTCTCA--AGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATTTAAAACAGAAGTTGAGG---GATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCA-AGTCTCCATCTATCTACTCTATTGATTACCCT-----TGAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCA-CCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACC-CAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTT-AAACCTGTAATGGATTCAAAAGAATCTTCTCCAACATTCCTCCACCATATGGGT--CTTAAGACACAGGCACTTGGATACT--------ATTTGCATGCTGTTATCAAAAGACTGTTGAAAATGGCCCTTCTTTAGTGTCATTATCACAGATGCTCAGAGGGAAG---ATCAGATGTCTTCTCAGTGCCCTCAAAGAATGTTTTCC--------------AAATCTG----------------------ATTGTCACTGGTGTTCTATTTCCTGAATAAAGTACAATCTT--ATTAATGGTATTCATGTGTTCTTTTCTTCTAAAACTCACTTAACTGCCTTCATAGTATGCTTATGTTTCTTTGTTTTTATCCT---TTGATCCACAAGTCAGTCAGTACCAATTATATTTTTACTTTGGGATCATAACAATAATTTTAATAACATAATTTTGAAACGTAAAAATGATTACATGGTGTTTGATTGCTTGAAGGACACATTTT
s HiC_scaffold_1 95832862 1790 + 233722169 AATTCGAAAAACTGAAAGACAGAAAGTCTGTATTGTCCCAAATAAGGAA-----GACAGCATTTCAGTGACAGTTACAGAATCCAACCAATTATCCGCCAGTCATCATTAACTGAAACTGAATACTAAAGTGGTAGGGTCT-CTGGGTCACCAGGATTTAACATTGGCT-GGAGATGAT--gaaacaatgtattttttatttt-taggggtCCTGTCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAAACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCT-----GATCCACAACTACAGCACTCCTGATACTCAGTTCCGATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGT-TGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTA--AGCGAAACTTATGACTGATACAATCATACAATATATTGGTTTGCATTGGCTTTATTGGTAGATAGGTTGATGTTcacatggaaaaacaaagtgccaAGGAAAGTTGGAtttgaattaaagaaaacaaaattatttttctttc---caaattttcaGTGTCACTATAAAGATATCTTGTCTTAGCAG----------TTGGGAAATCCTTTA---GTTCTT--------------------CCTTCTAATGGGAC----TTCATAACA-----------------CTTTGA------------------AACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTTAGTA-GAGATACTTTCTTTGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAAC------TGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGACATGATAGTACATAAGCTTTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAACATTGCCA--TATACTACTTTCAGATCCTGAGATACAAGAAA-ATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCA------CAACCACAATG---TCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaataggc-TCTTCTAT--TTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATA---------------TATCCTGCAATCCTTTACCCTGTAATCTGCCTGGGA---AGGTTCCTGGCAGCTCAACAATCCTTTGTATACTGTAAGTTCACAGCT---------------------GTGTCTGTATCACAGGCCTTTGGAAGGAAAAGTAGCAACTGTCTCCTT--TGTCTCTAGCAGATGTTGTCCTGCATGTCAGTgtggcatctgggcagcagtTTTTACCTGAAAAATTGTAACCTTTCTTTTACTTCTT-AATAAAGTACATTTTTTGTTGAACGG---ttgtgtatctttttcttttaaaact--ctta------ttagaaatatg-taatttttgttgATTTCCATATTTGCTTAATTTCTAGTTTAG---ATTCCTCCTGTGGTTTGAATTTGGGTTCATATCAAAAGTCGTACCCAAAGTATTTCAagat-tatatatt-ttctataatgtTTGATTGTTTTGAGCAAACAATTT

a score=5404
s chr3           92418870 142 + 160039680 TGCCCACC-CCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCT------------CAGTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95899023 149 + 233722169 TGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=6089
s chr3           92418870 142 + 160039680 TGCCCACC-CCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACT------GCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAA---ACTCCCCTGCCCTGCCAACAGAAGTGCCCCCC

a score=5260
s chr3           92418875 137 + 160039680 ACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCT------------CAGTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95892182 143 + 233722169 ACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5324
s chr3           92418881 131 + 160039680 AAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCT------------CAGTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95925975 137 + 233722169 AAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACC

a score=5202
s chr3           92418881 131 + 160039680 AAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCT------------CAGTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95931505 137 + 233722169 AAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5204
s chr3           92418881 131 + 160039680 AAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCT------------CAGTCATGCCAGCAGAAATGCCCTCC
s HiC_scaffold_1 95905739 137 + 233722169 AAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC------AGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACC

a score=5714
s chr3           92418905 116 + 160039680 CCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACC
s HiC_scaffold_1 95833949 116 + 233722169 CCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACC

a score=5874
s chr3           92418905 115 + 160039680 CCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95899005 115 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4082
s chr3           92418930 90 + 160039680 CTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95925970 90 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCACAAC

a score=4073
s chr3           92418930 90 + 160039680 CTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95892183 90 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4082
s chr3           92418930 90 + 160039680 CTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95931500 90 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4087
s chr3           92418930 105 + 160039680 CTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCC
s HiC_scaffold_1 95833947 105 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTC

a score=4195
s chr3           92418930 90 + 160039680 CTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAAC
s HiC_scaffold_1 95905734 90 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAAC

a score=4602
s chr3           92418930 105 + 160039680 CTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCC
s HiC_scaffold_1 95899003 105 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCC

a score=3714
s chr3           92418959  92 + 160039680 CCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGC---------CAGCAAAAGTGCCCACC
s HiC_scaffold_1 95905736 101 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGCCCTCC

a score=3650
s chr3           92418959 76 + 160039680 CCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCC
s HiC_scaffold_1 95892185 76 + 233722169 CCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCC

a score=3723
s chr3           92418959  92 + 160039680 CCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGC---------CAGCAAAAGTGCCCACC
s HiC_scaffold_1 95931502 101 + 233722169 CCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGCCCTCC

a score=17714
s chr3           92432275 1396 + 160039680 CAAGAAAAAAAAAGGAATTTTTGACAACCAATTATACCACAACTACCGCCTCCACCCCCGATTTTCCAGCTGCAAGAAAATACAGAAACTGAGAAAGAAGG----AATGTCCTCTGAGTCACT-GTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTAC---AGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTAT-TTATGGCCTTCTGGCATATTTTAAAT------TGTAGAAGCAGTTTGGTGC-----TTCCAAATTGGTATCATGGATTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTG------TTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGC------ATTTTGGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGC-ATTAGACTTTTGTATTTTCTCAGGA--------GTCCTTTTAT---AAGAACCCTAAATTCTGGAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCTGGATATGGGGTATGTAACCAAACCAGGACTTACAAAGTTAAAGGAAAAAAAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTC-TATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATA---ATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAGCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGT---CCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCA--TTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTT
s HiC_scaffold_1 95911475 1269 + 233722169 CAAGAAAGATAGAG-ATCCTTTGAGAACCAGTTGGAAAA--------------ACCTCCAAATTCCCA----CACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATCCAGTGATGGGATCCTGGAGCAGGTT--TTCCTATTCTGCAAATTCCCTGGCCAGCCAGTAATGGATGGATTTACATTTTGGTAAGGAAATTTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTCTGGTGGGGAAGACAGCCCTATAAAGAGGTCCTCCAGTACACAGCTGCTATCTTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAACCTGGTGAGTATGGTATTTTGAGTGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACATCAAGGTGGTGTGCACACTTTATGTTTGTGGGATGAATGTTACTTCAGTGATG-----GAAACTTAAGACTA-GGCAAAATGATACAATATTATGGgcttcatttccttttgt---tgGGTGGACAACTTGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAACTAAAAGACTGAAT---GAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTCAAAGGGG--TATGACTTAATCTGCTATGAGATGCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTTCTCCAATGTGCCCAGTA------AAGTTCTCAAGGGATAAAGATG-ACAGGGATTGAGTGAGA---TGCTCAGGACTTTTGAACTTGTGACTGCCCTT------TGTG-----------AGAAAATGTT------------------------TTCCCCAAGACTGAGGAAGCA----------GGTTGATAAAGTGCAAG---AGAGAATCCATAAAGTC-----------TTAAGGA-----------------------GGAGTAGCAATGTGCCTtggt------------attgcatgtttt----tctt---ctttttagtacATGAATTCCTTCTTCTGAAC----ATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCTGCCTCCTGTGGTCATA------------------ACTCCAAAGTGCCCTGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTC-AGTTcatgaaaagggaaggaaatctGGCTCACCTCCTTCTATGGCAGCaccttcttcttctcttcaaaGTGATTCATGAACACACAACAACCTTCTTCACCCTT

a score=20638
s chr3           92432275 1396 + 160039680 CAAGAAAAAAAAAGGAATTTTTGACAACCAATTATACCACAACTACCGCCTCCACCCCCGATTTTCCAGCTGCAAGAAAATACAGAAACTGAGAAAGAAGG----AATGTCCTCTGAGTCACT-GTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTA--CAGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTAT-TTATGGCCTTCTGGCATATTTTAAAT-----------TGTAGAAGCAGTTTGGTGCTTCCAAATTGGTATCATGGATTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTG------TTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGCA-------TTTTGGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGC-ATTAGACTTTTGTATTTTCTCAGGAGTCCTTTTATAAGAACCCTAAATTCTGGAAT-------------TTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCTGGATATGGGGTATGTAACCAAACCAGGACTTACAAAGTTAAAGGAAA-----AAAAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTC--TATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATA---ATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAG---------CCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGT---CCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCA--TTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTT
s HiC_scaffold_1 95924933 1310 + 233722169 CAAGAAAGATAGAGATCCTTTTGAGAACCAGTTGGAAAA--------------ACCTCCAAATTCCCA----CACAGCCATCAGGTAAATGAAACAGACTGCCCAGGTGGGTTCTGATTCACAAGCACTTAATGTAGTGATGGGATCCTGGAGCAGGTT-TTCCCTATTCTGCAAAGTCCCTGTCCAGCCAGTTATGGATGGATTTGCATTTTGCTTAGGAAATTGCTGGGCCAGCCCAGAGCTTGAAACTTCCACTTCCCCTCGGGTAGGGAAGACAGCCTTATAAAGAGGTCCTCCAGTACACAGCTGCTATCATTCTGGCAGTAGAGTCCCAAACTGCTCTCAGAACCTGGTGAGTCTGGTATTTTCAGTCGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACTTCAAGGTGGTATGCACATTTCATGTTTGTGAGATGGATGTTACTTCAGTGATG-----GAAACTTAAGACTA-GGCAAAATGATACAATATTATGagcttcatttccttttgt---tgGGTGGACAACTCGATATCTACATGGAACTCTCCTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAAT---GAAGTAGTTTTCCCTTTGCAATACAATTTGTGGTTCCTTTCAAAGGGG---TATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAACTATTG--------CTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGATAAACCTG-ACAGAGATTGAGTGAGA---TGCTCAGGACTTTTGAACTTGTGACTGCC----------------TTTTGTG-AGAAAATGTT------------------------TTCCCCAAGACTGAGGAAGCA----------GGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAA-----GAAGGGAATATTGTAAGCAT---------------------GAGTAGCAATGTGCCT------TGGTATTGcgagtttttcttct--------------tttcagtacATGAATTCCTTCTTCTGAAC----ATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCATCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCAGGAGTCCTC-AGTTcatgaaaagggaaggaaatctGGCTCATCTCCTTCTATGACAGCACCT---TCTTCTCCTCAAAGTGTTTCAGGAACACCGAACAGCCTTCTTCATCCTT

a score=20486
s chr3           92432313 1357 + 160039680 ACAACTACCGCCTCCACCCCCGATTTTCCAGCTGCAAGAAAATACAGAAACTGAGAAAGAA---GGAATGTCCTCTGAGTCACT-GTACTTGAC-----TCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACATC-CTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTACA---GAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTATTTATGGCCTTCTGGCATATT----TTAAATTG--TAGAAGCAGTTTGGTGCTTCCAAATTGGTATCATGGATTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGT--GTTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGCATTTT-GGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGCATTAGACTTTTGTATTTTCTCAGGAGTCCTTTTATAAGAACCCTAAATTCTGGAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTT-TGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTC---TGGATATGGGGTATGTAACCAAA-----------CCAGGACTTACAAAGTTAA-------AGGAAAAA----AAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTCTATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGA--CATCATAATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAG---------CCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTC------------AGCCATGC---------CAGCGGAAATGCCCT------CCTGTCCTGGAGGCACCATGCCAGCAGAAATGTCCATC-CAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCATTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCT
s HiC_scaffold_1 95832926 1315 + 233722169 ACAGTTACAGAATCCAACC--AATTATCCGCCAGTCATCATTAACTGAAACTGAATACTAAAGTGGTAGGGTCTCTGGGTCACCAGGATTTAACATTGGCTGGAGATGATg-----aaacaatgtattttttatttttaggggtCCTG-TCAAACCAGTTATGAGTGAATTTACATTTTGATGAGGAGATTAATGGGCCAAA--ACAGTGTTTAGACCTTTCATTTCCCCTGGGTGGGGCAGCAAGCCCTATAAAGAAGTTCCCTGATCCACAACTACAGCACTCCTGATACTCA-GTTCCGATCTACGTTGGAGAACTTGGTGAGTCTGATTTCTTGAGTTTGTCTGTCTGT-TGGCCTTCTTAGGTATTGAATTTAACCAGGACACAAGAAGTTTAGTGGGTTCAACTTATGATCATGAGATGGATGTTATTTACTTAAGCGAAACTTATGACTG--ATACAATCATACAATATATTGGTTTGCATTGGCTTTATTGG-TAGATAGGTTGATGTTcacatggaaaaacaaagtgccaAGGAAAGTTGGAtttgaa-----ttaaagaaaacaaaattatttttctttccaaattttcaGTGTCACTATAAAGATATCT-TGTCTTAGCAGTTGGGAAATCCTTTAGTTCT--------TCCTTCTA---------------ATGGGACTTCA----------------------------------------TAACACTTTGAAACTTGTGACTGCCTTTCTTGAAGATGTTCTTTTCACTCAATTAATATTATCAGATTTTTT--AGTAGAGATACTTTCTTTGGGAAAATGGcatgagataaaagaaaatttttcataaaCCTGATAAAATAAACTGCTCTAGGAGAAGCCAGAAAACTGTAGAAAGGGATCTGAGACTCAAGAATGTTCTAAGAGA------------GAGCAATAATATG---ACATGATAGTA---------CATAAGCT----TTTTCAAATGTTTCTGGGGAAATCCCTAATTCTGAAC----ATTGCCATATACTA-CTTTCAGATCCTGAGATACAAGAAAATGTCTTATCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTG------CCCTGCCAACAGAAGTGCCCCCCACAAGAGTAACTACCAGCTTCAAGATTCATCTAGGtcatgaaaggggaagaataggc-TCTTCTATTTCTGTTGCAGCACCTTAGTATCCTCTTCAAAAACTATCATATATCCTGCAA----TCCTTTACCCT

a score=18613
s chr3           92432374 1297 + 160039680 GGAATGTCCTCTGAGTCACT-GTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAG---CTTTACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTACAG---AGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTAT-TTATGGCCTTCTGGCATATTTTAAAT------TGTAGAAGC-AGTTTGGTGC-----TTCCAAATTGGTATCATGGA--TTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATAC--ACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTGTTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGC------ATTTTGGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGC-ATTAGACTTTTGTATTTTCTCAGGA-------------GTCCTTTTATAAGAACCCTAAATTCTGGAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCTGGATATGGGGTATGTAACCAAACCAGGACTTACAAAGTTAAAGGAAA-----AAAAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTC--TATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATA---ATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAG---------CCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGT---CCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCA--TTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTT
s HiC_scaffold_1 95891229 1226 + 233722169 GAGATGGACTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTAGAGCAGGTT-TTCACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGACCCAGCCC---ATGGCTTGGACCTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTTTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGTGGGTGTGCACATTTTATGATTATATGATGGATGTCACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATTATCAGCTTCATTTCCTTATGTTGG-----GTGGATAACTG--GATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAAT---GAAGTAGTTTTCCCTTTGCCATACAATTTGGGGTTCCTTTCGAAGGGG--TATGACTTAATTTGCTGTGAGATACTTCAATTCTTTCTGTGTAGCTATTGCTCTGTTCTCTAATGGGCGCAGT--------GATGTTCTCAGGGGATAATGATG-AGAGGGATTGAGTGAGA---TGCTCAGGACCTTTGAACTTGTGACTGCC----------------TTTTGTG-AGAAAATGTT------------------------TTCCCCAAGACTGAGGAAGCA----------GGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAA-----GAAGGGAATATTGTAAGCAT---------------------GAGTAGCAATGTGCCT------TGGTATTGcgagtttttcttct--------------tttcagtacATGAATTCCTTCTTCTGAAC----ATTGCCTTGTAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTTAAAACTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCA-AGAAGAGCCTTCTTCATCCTT

a score=20000
s chr3           92432382 1289 + 160039680 CTCTGAGTCACT-GTACTTGACTCAGTGACTATG-TCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTAC---AGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTAT-TTATGGCCTTCTGGCATATTTTAAATTGTA---GAAGCAGTTTGGTG----------CTTCCAAATTGGTATCATGGATTAAATCACAGTTATAAATGTGAAATGTAATAATGTT---GTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTG------TTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGC------ATTTTGGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGC-ATTAGACTTTTGTATTTTCTCAGGA--------GTCCTTTTATAAGAACCCTAAATTCTG------GAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCTGGATATGGGGTATGTAACCAAACCAGGACTTACAAAGTTAAAGGAAAAA-----AAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTC--TATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATAA---TGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAG---------CCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGT---CCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCA--TTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTT
s HiC_scaffold_1 95930556 1217 + 233722169 CTCTGATTCACAAGCAGTTAATGCAGTGGATGGGATTCTGGAGCAGGTTTTTTATTACTTGCAAGTACCTGTC---AGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGGCCAGCCCAAGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGCTGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCGGGTGTGCACACTTTATGATTA-TATGATGGATGTTACTTCAGTGATG-----GAAACTTAA----GTTTAGGTAAAATGATACAATATTATGagcttcatttccttttgt---tgGGTGGACAACTCGATATCTACATGGAACTCTCATGTAATGGGGAAGCCTGGACTTGATTTAAAAGACTGAAT---GAAGTAGTTTTCTCTTTGCCATACAATTTGGGGTTCCTTTAAAAGGGG--TATGACTTAATCTGCTGTGAGATCCTTCAATTCTTTCTGTGTAGCTATTGCTCTTTT-------CTCTAA--TGTGCCCAGTGAAGTTCTCAGGGGATAATCATGACAGGGATTGAG---TGAGAT-GCTCAGGACTTTTGAACTTGTGACTGC----------------ATTTTGTGAGAA-AATGTT------------------------TTCCCCAAGACTGAGGAAGCA----------GGTTCATAAAGTGCAAGAGAAAATCCAAAAAGTCTTAA-----GAAGGGAATACTGTAAGCAT-------GAGTAGAA--------------ATGTGCCT-----------------TGGTATTGTGTAAGTTCTT----CTTTTCAGTACATGAATTCCTTCTTCTGAAC----ATTGCTGTATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCACCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTcatgaaaaaggaaggaaatctgGCTCACCTCCTTCTATGGCAGCACCT---TCTTCTCTTCAAAGTGTTTCATGAGCACAGAAGAGCCTTCTTCATCCTT

a score=19316
s chr3           92432382 1290 + 160039680 CTCTGAGTCACT-GTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTT---ACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTAC---AGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTATTT--ATGGCCT----------TCTGGCATATTTTAAATTGTAGAAGCAGTTTGGTGC-TTCCAAATTGGTATCATGGATTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTG------TTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAG-AATTTGTTATTTACT-TGCATTTTGGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGC-ATTAGA--CTTTTGTATTTTCTCAGGAGTCCTTTTATAAGAACCCTAAATTCTG-----------GAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCTGGATATGGGGTATGTAACCAAACCAGGACTTACAAAGTTAAAGGAAA-----AAAAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTCTATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATA---ATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAA---------AGCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGT---CCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCA--TTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTTC
s HiC_scaffold_1 95904787 1224 + 233722169 CTCTGATTCACAAGCACTTAATGCAGTGATGGCATCCTGGAAGCAGGTTTTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCC---ATGGCTTGGACTTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATGTCCTCAGTTGTTTGTTGAATATAATCTGAGACAGCAAGGCAGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCAGTGATG-----GAAACTTAAGACTA-GGTAACATGGTACA--ATATTATCAGCTTCTTTTCCTTATG-TTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAATGAAGTAGTTTTCCCTTTGCTATACAATTTGGGGTTCCTTTCAAAGGG-GTATGACTTAATGTGCTGTGAGATGCTTCAGTTCTTTCTGTGTAGCTATT--------GCTCTGTTCTCTAATGTGCCCAGTGACGTTCTCAGGGGATAATGATG-AGAGGGATTGAGTGAGA---TGCTCAGGACCTTTGAACTTGTGACTGCC----------------TTTTGTG-AGAAAATGTT------------------------TTCCCCAAGACTGAGGAAGCA----------GGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAA-----GAAGGGAATATTGTAAGCAT---------------------GAGTAGCAATGTGCCT-----------TGGTATTGCgagtttct-----------cttcttttcagtGCATGAATTCCTTCTTCTGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCA------CAACAGCAATGCCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACACCATCCGTAGTCCTC-AGGTcatgaaaagggaaggaaatctGATTCACCTCCTTCTATGGCAGTACCTTCTTCTTCTCCTCAAAGTGTTTCAGGAGCACCGAAGGGCCTTCTTCATCCTTC

a score=17063
s chr3           92432383 1288 + 160039680 TCTGAGTCACT-GTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTAC---AGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTATTT-----------ATGGCCTTCTGGCATATTTTAAATTGTAGAAGCAGTTTGGTGC-TTCCAAATTGGTATCATGGA--TTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTG--TTGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGC------ATTTTGGTGCCCTTTAAAA-----AAGACTTA---TGTATTAGCAGGCATTAGACTTTTGTAT-------TTTCTCAGGAGTCCTTTTATAAGAACCCTAAATTCTGGAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCTGGATATGGGGTATGTAACCAAACCAGGACTTACAAAGTTAAAGGAAA-----AAAAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGT--GTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTCTATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATA---ATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAA---------AGCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTC------------AGCCATGC---------CAGCGGAAATGCCCTCCTGT---CCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCATTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTT
s HiC_scaffold_1 95898059 1243 + 233722169 TCTGATTCACAAGCACTTAATGCAGTGATGGGTTTCTGGAGCAGGTT-TTTACTACTTTGCAAAGTACCTGTCAAGCCAGTTATGGATGGATTTGCATTTAGCTTAGGAAATGTCTGGCCCAGCCCATGGCTTGGAACTTCCACTTCCCCTTGGGTGGGGAAGAAAGCCCTATAAAGAGGTCCTCCAGCACACAGCTGCTATCCTTCTGGCAGTAGAGTCCCAAACTGCTCTCCAGAAACCGGTGAGTCTGGTATTTGGAGGGGGTCTGTTTCTTGATATCCTCAATGTTTGTTGAATATAATCTGAGACAACAAGGCGGGTGTGCACACTTTATGATTATATGATGGATGTTACTTCACTGATAGAAACTTAAGACTAGGTAACATGGTACAATATTA-------TCAGCTTCTTTTCCTTATGTTGGGTGGATAACTGGATATCTACATGGAACTCTCGTGTAATGGAGAAGCCTGGACTTGAAATAAAAGACTGAAT---GAAGTAGTTTTCCCTTTGCCACACAATTTGGGGTTACTATCAAAGCGGTATGACTTAATCTGCTGTGAGATgcttcaattctttatgtgtagCTATTGCTCTG------TTCTCTAATGTGCCCAG-----TGACGTTCTCAGGGGATAATGATG-AGAGGGATTGAGTGAGA---TGCTCAGGACCTTTGAACTTGTGACTGCC----------------TTTTGTG-AGAAAATGTT------------------------TTCCCCAAGACTGAGGAAGCA----------GGTTGATAAAGTGCAAGAGAGAATCCAAAAAGTCTTAA-----GAAGGGAATATTGTAAGCAT---------------------GAGTAGCAATGTGCCTTGGTAT-AGCgagtttc----tcttcttttcagtGCATGAATTCCTTCTTC-------------------TGCACATTGCCATATAATTCCTTTCAGATTCTGAGACTCCAGAAACATGTCTTATCAACAGCAGCAGTGCAAGCAGCCCTGCCAGCCGCCTCCTGTGGTCATAACTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTCCACAACAGCAATGTCCTCCTGTGCATCCTGCCCCACCCTGCCAGCAGAAGTACCCACCCAAGAACAAGTAACAACATCAGCAGTCCTC-AGGTCATGAAAAGGGAAGGAACTC--TGGCTCACCCCCTTTATGGCAGCACCTTCTTCTCTTCAAAGTGTTTCGTGAGCACAGAAGAGACTGTTTTATCCTT

a score=5092
s chr3           92433395 107 + 160039680 TACCCACCCCCAAAG---------CCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCC------------------------------CTCCTCAGCCATGCCAGCGGAAATGCCCTCC
s HiC_scaffold_1 95833967 146 + 233722169 TGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCCTACCTCCAAAGTGTCCTGAGCCATGTCCACTTCCACAACCACAATGTCCTATGCAAACTCCCCTGCCCTGCCAACAGAAGTGCCCCCC

a score=4749
s chr3           92433403 74 + 160039680 CCCAAAGCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTC
s HiC_scaffold_1 95899040 74 + 233722169 CCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCTC

a score=4038
s chr3           92433420 83 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCT
s HiC_scaffold_1 95925970 83 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGCCCTGAGCCATGCCCACCT

a score=4071
s chr3           92433420 115 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGTCCTGGAGGCACCATGCCAGCAGAAATGTCC
s HiC_scaffold_1 95892183 100 + 233722169 CTCCAAAGTGCCCTGAACCATGCCCACCTCCAAAATGCCCGGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCCCACCT------------CCA---CAACAGCAATGTCC

a score=4057
s chr3           92433420 66 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTC------------AGCCATGCC
s HiC_scaffold_1 95931500 78 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCGGAGCCGTGCCCACCTCCAAAGTGTCCTGAGCCATGCC

a score=4406
s chr3           92433420 115 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCC-------TGTCCTGGAGGCACCATGC---------CAGCAGAAATGTCC
s HiC_scaffold_1 95899003 127 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACTTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCGATGCCCACCTCCAAAGTGTCCTGA----GCCATGCCCACCTCCACAACAGCAATGTCC

a score=4170
s chr3           92433420 66 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTC------------AGCCATGCC
s HiC_scaffold_1 95905734 78 + 233722169 CTCCAAAGTGCCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGCC

a score=4122
s chr3           92433420 66 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTC------------AGCCATGCC
s HiC_scaffold_1 95833947 78 + 233722169 CTCCAAAGTGTCCTGAGCCATGCCCACCTCCAAAGTGTCCTGAGCCATGTCCACCTCCAAAGTGTCCTGAGCCATGCC

a score=10553
s chr3           92473235 353 + 160039680 GTAGGCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTGACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACTGATGGC------------------------------------------------CTAG--------------TCGGCCAGTT----------------------------------------------------------------------------------------------------------------CCATGTTTCTTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAGCCCAATGTATA
s HiC_scaffold_1 16174761 517 + 233722169 gtaTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACT--CTGAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGACTGAAAGTCTA

a score=3795
s chr3           92473236 67 + 160039680 TAGGCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGT
s HiC_scaffold_1 77422671 67 + 233722169 taTGCCATGAGCTCATAGGGAACAGGCTCCAACAACTTAGGCTCCTTCCCTTTGGTGCTCACAAAGT

a score=13041
s chr3            92473236 350 + 160039680 TAGGCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTGACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACTGATGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGTCGGCCAGTTCCATGTTTCTTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAGCCCAATGTA
s HiC_scaffold_1 178274458 527 + 233722169 TACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaagca

a score=13536
s chr3           92473236 361 + 160039680 TAGGCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCT-CTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTGACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACTGATGGC-----------------------------------------------------------------------------------------------------------------------------CTAGTCGGC----------------------------------------------CAGTTCCATGTTTCTTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAGCCCAATGTATATTGTATGTT
s HiC_scaffold_1 80725746 532 + 233722169 TATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATATAGTAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCCAAGAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAAGT-TAATGTATGTT

a score=4927
s chr3           92473466 116 + 160039680 GTCGGCCAGTTCCATGTTTCTTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAGCCCAA
s HiC_scaffold_1 99840913 114 + 233722169 GTGGCCAAACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTAC--AAAGATGACAGTTTTTGACAAA

a score=47620
s chr3           92532009 4071 + 160039680 [encoded data, 4709 characters]
s HiC_scaffold_1 95655175 4129 + 233722169 [encoded data, 4709 characters]

a score=6382
s chr3           92532987 127 + 160039680 CACTGCTGGGGTGGAGGGCAGCATTGCT---GTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCATTGCT---GTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCACTGCTGTGGTGGGGCACACTGCTTCT
s HiC_scaffold_1 95656139 133 + 233722169 CATTGTTTTGGTGGGGGACAACATTGTTTTGGTGGGGGACAACATTGTTTTGGTGGAGGACAGCACTGCTTTGGTGGGGGACAGCACTGCTTTGGTGGGGGACAGTACTGCTTTGGTGGGGGACAGTACTGCT

a score=5798
s chr3           92538687 540 + 160039680 AACAGCAAAGCATCTGAGAAGATGGGAGATGCCTCTAGAC----GTCAGATTTCTTATGGATGACTTCCTGCTAGTATCCTAGTGTCTAGAAAGGATTTTCATTCAGAACTGGAAGTAAATTAATTTGGGGGAAATGAATTAAGGCATTCCAACAGAAAAGATACAGACTGAGAAAACAGCCACATCAGGAAAGATGCTTTGTTTCTCAGCAACAAAAGAAACTAAGGTACAGTAGTGGTGGTCAGTGATAAAGAACAGTGGAAAATATTGTGGACCAGACTCCATGAGAAGTCTTGAACTCCAGACTAGCCAGAAAACTTTCATTTCAGAATATGAGCCTGAGCCCTGGCTCTAAACAGTGCAGTGGTGACTAGTAAGCCCTGGGTTTTAAAAGGTTTGATTAGCATAAGGAGGGATGGGGCATGGTGTGCATTAGGAGGATCCAGGTATGCTCTTAGCTTGCCCAATAATTACTGTGAGCTTTGGGATAATTGGCTTCTCTCTGT--GGCTCAGACTTTTGACTCCTACAGAACATGAGAATCT
s HiC_scaffold_1 95662004 369 + 233722169 AACAGAAAAACATCAGAGTAGTTAGGAAAAGATCTTAGACTACTGTCAGA------AAATCTAACTTCAATTTTTTAAGCTGGCATTTAGCAAATGTTATGGTTCAGAACTGGAGCTAAGTTAAGTTTTGTGAAATAAGTGAGAGCATTCCAGAAAAGGAGACATAGATTAGGAAAACATTGGTAGGTGGAAAGATGTTTTATGT----------------------GTATAG-------------------------GGGGAAAAC---------------------------------------------------------------------------AGCACTTACTTTTAAACATGC---------------------------------TTTG-------TGAGGAGATAT------TGTTTTGTATTTAGAAGAACCAGAAATATTTCTAGCTTGGCCAATAATCACTGTGAGCTTT-GGATAATTGGCTTCTCTTTGCTGGGCTCAGGTGTTTG--CTATGTAAAACATTATGACCT

a score=12481
s chr3           92544291 647 + 160039680 TAAACAAAATGCAGAACATTGCAAAGTTGTTTTGGTACAatatatattaactatttatatttatatataatttataaaatgtatataaattacatatctatgtaatatagaaataACTTGTATGTGTGTGTGTGTGATGCTATGGTGCATCCTATTAATGCTAAAACATCAGTAAAATGTAAGCTCACTTGTTACTTCTTAAAAA--CTAAAAGGAAATTACCTTAATACACACTTGAAAG-ATAATTCCACTTTAGATAATAGAAGCTAAGACTTGGTTTTATTCCTAGGAATAAACTAAGGCAATCCTACAAAGTGAACATAGCAATTCAGCAAAGTACAACAGAAAGGAATTAAAGTCAGTGTCTTGGGAGCTTTAAGTCTCATTGTACCTGGCTCCTGGTCTCTAA-TAAGTTCTTTTATTTTCAATGGTGAGGCTATGGCTGAAAACAAGGAT--GACAATGGTAACTTCCTTCCTGCCTTTCTGCCTCCACCTCCCTTTCCATACACACCCT-CAACTACAA-TACTCTCTTGTGGGTGTATGAAACCCAGACAAGCAGGTATCTTGTTTGCTCCTAGGTAGGGAGAACAGACACTGTGTCTGGAATTCTGACTCATGGCAAACTTCCGTTAGGGTGGGTCTCTCTCTT
s HiC_scaffold_1 95675182 533 + 233722169 taaatgaaatttagagTGTTGCAAAGtta-----atataatgtat--------tttatttttagatat---ttgaaaattttatatg-------------tgaaatata-------------------ttcGTAAGATGTCAT--------------------------------AATATAGGATCAAGTCTTGGTTAGTAAGAAaccttaaaagaaatacattaaataacCTCTTCAAAGTGTAGCCCCACTTTAGGTAGTACAGAACCAGACCACATTTC--CCATAGGgatgaaataagataattccac-------------------------gTAGCATGAGAAGAAGCCCAGGAGGGGCTCCTAGTACCCTCAGGTGCCATTATTATTGGTTCCTGGCCTCTGGCTACTTCCTTTTATTCTCAGTAGGAAGGGTAGGTCTGA---CCAGAATCAGACAGTCATGACTTCTATCCTGCT------------CCTCTTTTTCCACACACACCCTTCATCTGGGACTTCTGGCATGTGGGTGTGTGGAGCCCAGACAGGCAGGTATGTTGTTTGCTCCTAGGTACACATATCAGATTGTATGTCTGGAATTCTGAATCATAACAAGCTTCTGTGGAGGTGGGTATCTATCCT

a score=7898
s chr3           92604909 345 + 160039680 TCATTTCAA-AGCTTATCCTGGGCCATGTTCTTTGTTTTCTCGAGGGATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGC---TGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCC---AAACCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGG--------------GGCACTGAGAGGGAGACATGAAGTAGGAACCTGG-GGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTG
s HiC_scaffold_1 95198785 350 + 233722169 TCATTTCAAGAGCTCTTCCTGGGCCA--------------------------GCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACTCACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=7221
s chr3           92604912 342 + 160039680 TTTCAAAGCTTATCCTGGGCCATGTTCTTTGTTTTCTCGAGGGATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGC---TGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCC---AAACCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGG--------------GGCACTGAGAGGGAGACATGAAGTAGGAACCTGG-GGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTG
s HiC_scaffold_1 95149231 346 + 233722169 TTCCAGAGCTCTTCCTGGGCCA--------------------------GCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAACAGTCAGGAGCCTGGTGCCTGTGTCGGTGATGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=7237
s chr3           92604954 300 + 160039680 GATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGC---TGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCC---AAACCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGG--------------GGCACTGAGAGGGAGACATGAAGTAGGAACCTGG-GGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTG
s HiC_scaffold_1 95215613 330 + 233722169 GGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACTCACAGCAGTCAGGAGCCTGTTGCCTGTGGCAGTGGTGGAAGACACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=7338
s chr3           92604954 300 + 160039680 GATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGC---TGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCC---AAACCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGG--------------GGCACTGAGAGGGAGACATGAAGTAGGAACCTGG-GGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTG
s HiC_scaffold_1 95137973 330 + 233722169 GGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGTGGTGGAAGAGACTGCGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=17312
s chr3           92644037 1184 + 160039680 TGTTAAGGATTATTTTTTTTATTTCATAGGAATGGTCATACTGGGGAAATGCAAGTT--AAACTTGGCCT-TTGAGCTGATGCTG--TTACTAGGTGATAGAAGTAGGCTTGGGCAAAGATTAGTGCTCAGAAAAAGGCACTGTAGCTGTTAGTTGGTTCAAATTGTCTAGCCATTG------------------GTTAATGTTGCCAGGTAGTAGTTG-TAAGTTCTAGTGGCTAAAGGATGTTAGAAGTAGCAAAAGAATTACT----AAATGTCAG---GATACTCTTTGGGGAGGGCTGCCTTCTGGATGTGGCCTTTGTTAATCCTCTC-----ACTAGCATCAT----CTGCACTTAGG--------------AGTTGTGCAGGGAAGAGGATGGCTGAGGGAAAGGCTGCTAGTGCCTCTGTGTTCAGAGGAC-------AGCTGTACCCAGGGGCCT-TATGTGCAGC-TTGGTAAAATAGTTGTGTTCATTATGCACAGTTGTCAT-----------------CTGAATGTTAGG----TCCTAAAA-GAGAGTACATGGTTAAGA----GTAGAGCTAGTGGAT---------------------ATGGTAGAATTGACAAAAAGGCTTCCTCTTGAACAAGGAACTGCTAAGCCA----TGGACAGTGTGGGGAGATTCATGTTACTGGGCTGACTG--GAGGGACAGAGAGGTTCATA----GGGCAAGGTCTACAGGGGTGTTGAGACTGACATCATG---AGAGCCACTGC---------GTCTCCCAGCTGCTTCATGGGAATACAGTTGTTGAGTGGAAACAAC--CCTTCTACAT---------ATGCTAGAATCTGGTGATAAACTTAGGAATGCTATATTTACTGTGGTATGTTGCTTTGTGTTTCTTTGTAAGCTGAGACTGAGCAAATGCAGAATTT-AATTGTAACTTTGCCAGTATGTCTATCTAGAGACCTGCTGCTATTTTTGTCTTCTATGAAATTTCTGTTGCCAAAGAAGACAGGATTACAATTTTGTCTGCAAGATTGAGATGGCATGGTGTATTCTTGGTTATCAAAA-TCCTTGTGTAG-TGTGGGGTTTTTAGTTGGTGGATATTCACAATGTG-GGGAAAGCATGGTATATAGTGTATAATCTCAATTGCCCA----AGTGTGTT------AAGCTTGCAGGATGTAGAACAACACATCAAACTGAGCTGCTTGTGACTG--GGTGACTTTGTTCTTGCCTTCTTGTGTT-TTGTTTCCTGTAATGCACACACCAA------AAAAATAAATGAAAGCTTCCTTAAAAGAAAAACAA
s HiC_scaffold_1 30320950 1282 + 233722169 TGCTAAGTATT-TTTTTGTTACTTCATAGGAATGGCTGCATTTTGGCGATGGAATTTTCAAACCTGATGTCTTGAAC--ATACTGACTTCACAGGCAA---GGGTGGGGATAGGCACATAGAAGTGTTC-----------TTGGGCCATTCAGTGAGTTCAGATTAT--AACCATTATTCTATATGCACATTCTAGTTAATATTTCTGGGTATTGGAGGATAAGTCCTAATGCATAAATAATGTTGAAAGTAGTAAACTAATCCCTCTACAAATGCCCTTTTGTTAGTTTTCATGACGCATTCTCTTCTGGAAGTAACCTCTAT-AGTCATCTCTTGGAGCTAGC--CATGGTCCTGAAATTAGGCCCTGAAGCAGAGAAAAGgcaaaggggagaggaagggtaAGGGCT-GATTGCTAGTATCTCCACATCTGGCagatgattttaaattataatcaTAAATCTGTATGTGCGTCCTTGGTAAAATACTTGAGCTTATTGTGCACAAAGCTCATACTCTATTACACAACATCTAAGCTTTATAGATACCCTGAGGTGACAATGTATGATTAAAAAACAGTAGAGGTAATGGGTTAGCCAACATTGAATATTCTTCTATTATAAATGGTAGAAAAGATGCATCTTGGACTTGGAATTGCTACATCACATTTGGGCAGTGTGTATCAGGACTTGTCATTAGACAGGTAGCAGAGGACCAGAAGAAAGCACACCAGGAGAGACGTGTGCAGGGG-GTTCAGAGAGACATTTTGGTAAAAGCCCCTGTTGTGTATGTATCTTCTAAATGTACTA-AGAAATGCATT-----------AATAATTACCTTCTTCATTATTCCTTAATTGTGGAACTCAG--ATAACTTTCAGAA-ACT-TGTTTGGTGTGCTCTGTTGCTTTGT--CTCATTTTAATGAAGCAGTAAAAGAATGCAGTATTTTAATTGTAACT--GCCAAT------------------GTTGTGATTTT-ATCTCCAATGAAAGTTCTTTCCCCAAGAAAGTCAGAAATACACTTTTCTCTCATGGATTGAGTTGGTATAGGATATTCTTGGTTATCAAAACTAGTCTTGCAGCTTTGAGAGTTTTGACTGGTAAACATTCATGATGTGTGGAAAAGCGTGGCACACA-TGTATAATCTTGGTCACACAAAATAGTGTTTTGTATACGTACCAGCAGGACATA-AAGGGGACATCCAACTTAGTGGCTTACAATTGCAAAtgactttgttctttgtttcttgtaTTCTTGCTTcctataatacatatattaattGTCTAAAAAtaacc---attatttttaaaagaaaaaaaa

a score=15508
s chr3            92644668 527 + 160039680 GTGTTGAGACTGACATCATGA------GAGCCACTGCGT------CTCCCAGCTGCTTCATGGGAATACA---GTTGTTGAGTGGAAACAACCCTTCTACATATGCTAGAATCTGGTGATAAACTTAGGAATGCTATATTTACTGTGGTATGTTGCTTTGTGTTTCTTTGTAAGCTGAG-ACTGAGCAAATGCAG-AATTTAATTGTAACTTTGCCAGTATGTCTATCTAGAGACCTGCTGCTATTTTTGTCTTCTATGAAATTTCTGTTGCCAAAGAAGACAGGATTACAATTTTGTCTGCAAGATTGAGATGGCATGGTGTATTCTTGGTTATC-AAAATCCTTGTGTAG-TGTGGGGTTTTTAGTTGGTGGATATTCACAATGTG-GGGAAAGCATGGTATATAGTGTATAATCTCAATTGCCCAAG----TGTGTTAAGCTTGCA-----GGATGTAGAACAACACATCAAACTGAGCTGCTTGTGACTG--GGTGACTTTGTTCTTGCCTTCTTGTGTTTT-GTTTCCTGTAATGCACACACCA-----AAAAAATAAA
s HiC_scaffold_1 107132912 521 + 233722169 GTATTCAGATTTACATTTTGGTGAGAGGAATCAATGTGTGTGTATCTTTTAGCTACACTATAGCAATACATTAATGATTCAATGGAAATAGGCCTT--------GTTAGTATCT--------------------------TAACGTATTGTGTTG----ATGTCTCATTTTAAATTGAGCATTAAGGAAATGCAGTAATGCAATTGTAACTTTGTGAACACTTTCATCTAGAGGCCTGTTGCCATTTTTATCATTAGTGAAACTT-TGTT-CCAAGAAAGACAAGATTACAATTTTTTCTAACAGATTGAGTTGGTGTATTGTATTCTTGGTTATTGAAAATACTCTTGTAGCTTTGGAATTTTGAACTGGGGAATATTCATGATGTGTGGAAAAGCATGACACCCACTGCACAAACTTAGTCACACAAAATGTCATGTCGTGTATGTACACATGGATCTAG---AACACTTCCAGCTAAGCTGCTTATGACTGCAGATgactttgttctttgcttttggtGTTTTGGTTTCTTATAATGCAcatgttaactttaaaaaataaa

a score=11768
s chr3            92644809 419 + 160039680 TTTGTGTTTCTT--TGTAAGCTGAG-ACTGAGCAAATGCAGAATT-TAATTGTAACTTTGCCAGTATGTCTATCTAGAGACCTGCTGCTATTTTTGTCTTCTATGAAATTTCTGTTGCCAAAGAAGACAGGATTACAATTTTGT--CTGCAAGATTGAGATGGCATGGTGTATTCTTGGTTATCAAAATCCTTGTGTAGTGTGGGGTTTTTAGTTGGTGGATATTCACAATGTGGGGAA-AGCATGGTATATAGTGTATAATCTCAATTGCCCAAGTGTGTTAAGCTTGCAGGATGTAGAACAACACATCAAACTGAGCTGCTTGTGACTGGG--TGACTTTGTTCTTGCCTTCTTGTGTTTTGTTTCCTGTAATGCACACAC------CAAAAAAATAAATGAAAGCTTCC---TTAAAAGAAAAACAATTTATAA
s HiC_scaffold_1 220314721 403 + 233722169 tttgtttttcttattttaaattgagtATTAAGGAAATGTAATATTGTAATTGTAACTTTGCCAATACTTCTATCTAGAAGCCTGTTGCTATTCTTACCTTTAGTAAAAGCTTTGTTCCCAAGAAATCCAGGATTACAATTTTTTTCCAGACAGATTCAGTTGTTCTAGTGTATTCTTTCTTATCAATATTGCCATA-GCTTTGAGATTTTGAATTGATGAATACTCATGATGTGTGGAATAGCATGACACATGTTGTACAA---------ACCGAGTCAGTCACACATG--AGACCTAGAAAAAC------AATTATGTTGCTTATGACTGCGAAtgactt----------------ttttttgtttcctgtaataGACatactaactttaaaaaaatagagattgTATTTCAGACTAAAAAAATAccattatataa

a score=13539
s chr3           92646725 442 + 160039680 TGCTCAGGTCAGCAGCAGCCTCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95149193 382 + 233722169 TGCATAAGGCTGCATCAGGCTCTAGACTACTGGATCCCTTCCAGAGCTCTTCCTG-GGCCAGCTCAGC------AGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAACAGTCAGGAGCCTGGTGCC-----------------------TGTGTCGGTGATGGAAGAGA------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAGA--------GGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13777
s chr3           92646728 439 + 160039680 TCAGGTCAGCAGCAGCCTCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95137923 378 + 233722169 TCAGG-CTGCATCAGGCTCTAGACTACTGGATCCCTTCCAGAGCTCTTCCTGGTCCAGCT-------CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGCC-----------------------TGTGGCGGTGGTGGAAGAGA---CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAGA--------GGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13180
s chr3           92646736 431 + 160039680 GCAGCAGCCTCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95215570 371 + 233722169 GCATCAGGCACTAGACTACTGGATCCCTTCCAGAGCTCTTCCTGGTCCAGCT-------CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGTTGCC-----------------------TGTGGCAGTGGTGGAAGA------CACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA------GAA----GACACCAG-AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=10855
s chr3           92646783 457 + 160039680 caccactgctgcca----cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC--TGCTGGTGAATGCTCTGGGGC---TGTGGAAGAATCATAATGCAAA----TTAGAACCAGGAT---CCTGGGGTCATCCTAT
s HiC_scaffold_1 95025850 398 + 233722169 CATCACCGCTGCTAAGTTCAGCAGCA------GCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG-ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCAGGGAACCTGGGGAGAGCAAGGAAAAAGCTCAGTGGAAAAGCTTTAGGCCAATGGTGTCTCTGGGATGATCTTAT

a score=7860
s chr3           92646794 370 + 160039680 ccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACA
s HiC_scaffold_1 95111232 285 + 233722169 CCATATCAGCAACAACTCTCAGCACTGTGGC---------------TTCCACCAGAGCCCCCAGACTGCCGACCACTGTCACCATC---ACAAGAGTCCAAGCTCCACAGCCTGCACCTGTGGGACCTGCAACACCTGTGGTGGCTCAGGCAGTAGCCTCC---CTCAGGGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGGGctgggagcagagcaggaggaggcag---------caggcagACACTATGCTGGGCTCTTCTGGGGGCACGTTGGGG-------------------------AGGGGACTGGCACTGCTGCTAGTTATGTTGGCAGGACA

a score=8016
s chr3           92646808 360 + 160039680 gctgc--caccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 95263985 293 + 233722169 GCTGCATCCCCAGAGTTGTGACCACAGCCAGAGCCCCCAC-ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGCTGAGGCCA---CTGCAGC---CCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAG------------------------------------GGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTC

a score=10407
s chr3           92646808 360 + 160039680 gctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 95039927 291 + 233722169 GCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG-ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC

a score=13386
s chr3           92646827 340 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95198817 316 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA------GAA----GACACCAG-AGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=9527
s chr3           92646830 401 + 160039680 cagccactgctgccaccactgctgccacagc---agcc------actgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGA---GGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGA--ATGCTCTGGGGCTGTGGAAGAATCATAATGCAA--ATTAGAACCAGGATCCTGGGG
s HiC_scaffold_1 95235728 344 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------------------caggcagatatTGTGCTGGGCTCTTCTGGG---GGCACTTGGGGTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAATTTTACCTT------------GAAACAAAATGCAGATATTTGAACCCAGACTCTTGAG

a score=8409
s chr3           92646853 314 + 160039680 gccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGA---TGG---CGACGGAGGGATCTGCGGGG------TCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95124123 260 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAG------------------CCCCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGGAGGAA----GGCATGATGCT-----GGACACTGCAGTGGACATTTTGGGGT---------------GCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCT

a score=8571
s chr3           92646916 257 + 160039680 GGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTA---GGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTG
s HiC_scaffold_1 95358363 247 + 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAGGA---AGAGCCTGGA----------GATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTG

a score=4133
s chr3           92647116 122 + 160039680 GACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAG-AATCATAATGC-AAATTAGAACCAGGATCCTGGGGTCATCCT
s HiC_scaffold_1 95460308 124 + 233722169 GGCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTTTTCAAGAGGAAGTCAATAGGCAATAGGAAGTCAATAGAATGCTAAGTTAAGTCCATGATTCCAAAGCGGTCCT

a score=10323
s chr3           92655787 439 + 160039680 TGTCTGAAGTGCAAGGGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95039898 319 + 233722169 TATCCGCATCATGAAGATCCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG----------ACTGCCG--------ACCACTGTCACCATCAC------------------------------------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT

a score=13722
s chr3           92655813 413 + 160039680 GCAGCAGCCCCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCT--GTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95149204 371 + 233722169 GCATCAGGCTCTAGACTACTGGATCCCTTCCAGAGCTCTTCCTG-GGCCAGCTCAGC------AGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAACAG--TCAGGAGCCTGGTGCCTGTGTCGGTGATGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=14047
s chr3           92655813 413 + 160039680 GCAGCAGCCCCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAG---------CTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95137930 371 + 233722169 GCATCAGGCTCTAGACTACTGGATCCCTTCCAGAGCTCTTCCTGGTCCAGCT-------CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGTGGTGGAAGAGA---CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAG---GAAGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13464
s chr3           92655813 413 + 160039680 GCAGCAGCCCCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAG--CTGTGGC-GATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95215570 371 + 233722169 GCATCAGGCACTAGACTACTGGATCCCTTCCAGAGCTCTTCCTGGTCCAGCT-------CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGTTGCCTGTGGCAGTGGTGGAAGACACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA-----------GAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=10023
s chr3           92655835 426 + 160039680 ctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT---AGGCTGGTGAGTGCTCTGGAGCTGTAGAAGAGTAA
s HiC_scaffold_1 95208078 382 + 233722169 CCATTTTCTCAGTAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA-GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAGCAACCACTACCCCCAGAACTG------------GAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTGTG----GATATTTTGGA-TGTACTTGGG---ACACTTTGGA-AGGCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAACGAGAATAa

a score=9786
s chr3           92655844 394 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT---AGGCTGGTGAGT
s HiC_scaffold_1 95146557 351 + 233722169 CAGTAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTA-GGCTCACACTG--ACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCCTGTGGTGGCTTGGGCAGCAGCCACCACCCTCAGAACTG------------GAGCCACAGCAGATCTCAGAACTGGAGCC------------------------ACAGAAGAAAGAGATCTGAGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGTG----GATACTTTAGA-TGCACTTGGG---ACACTTAGGA-AGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGT

a score=8492
s chr3           92655855 371 + 160039680 gctgc--caccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95263985 292 + 233722169 GCTGCATCCCCAGAGTTGTGACCACAGCCAGAGCCCCCAC-ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGC------TGAGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacag----------------------tgctgggCTCTTCTGGGGGCACTTGGGGG------------------------AGGGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCT

a score=10372
s chr3           92655860 369 + 160039680 caccactgctgcca----cagcagccactgctaccaccactgctgccacagc---agcc-----actgctg----ccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGG
s HiC_scaffold_1 95025850 316 + 233722169 CATCACCGCTGCTAAGTTCAGCAGCA---GCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=13368
s chr3           92655874 352 + 160039680 cagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcA-TCCAGAGCT--GTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95198817 316 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA-----------GAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=9185
s chr3           92655877 359 + 160039680 cagccactgctaccaccactgctgccacagc---agcc------actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTGGTGA
s HiC_scaffold_1 95235728 298 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------caggcagatatTGTGCTGGGCTCTTCTGGGGGCACTTGGGG---------TAGGGAA---------------ACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG-TGGTAA

a score=9233
s chr3           92655900 357 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGA---TGG---CGACGGAGGGATCTG------CGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT------AGGCTGGTGAGTGCTCTGGAGCTGTAGAAGA
s HiC_scaffold_1 95124123 295 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAA------------------CTACAGCAGCCCCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGG---------AGGAAGGCATGATGCTGGACACTGCAGTGGACATTTT---------------------------GGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAAGAGAGTTCAGTGAGTCCTCCTAAAC--TAGAAGA

a score=7853
s chr3           92655963 269 + 160039680 GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACA--CAGGGgggcacttgggaggacatt---ttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTG
s HiC_scaffold_1 95358363 247 + 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCA---------------GGAAGAGCCTGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGT------------AAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTG

a score=3669
s chr3            92657641 74 + 160039680 GGGTTGACATAGTCAAAATATGTCATATGCATGCATAAAATTTCACATGGAAACCCCATATTTTATAAAGTTAA
s HiC_scaffold_1 147734400 74 + 233722169 GGGTGGATATGGTTGAAGTATGTTACATACATGCATAAAATCCCCCAAAGAAACCCAGTCTTCTGCATAATTAA

a score=10505
s chr3           92668883 445 + 160039680 caccactgct----tccacagcagccaccactgccaccactgctgccacagcatcca--ctgctg----ccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTC--TGCTGGTGAATGCTCTGGGGC---TGTGGAAGAATCATAATGCAAA----TTAGAACCAGGAT---CCTGGGGTCATCCTAT
s HiC_scaffold_1 95025853 395 + 233722169 CACCGCTGCTAAGTTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCAGGGAACCTGGGGAGAGCAAGGAAAAAGCTCAGTGGAAAAGCTTTAGGCCAATGGTGTCTCTGGGATGATCTTAT

a score=8099
s chr3           92668888 368 + 160039680 ctgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 95263986 292 + 233722169 CTGCATCCCCAG-AGTTGTGACCACAGCCAGAGCCCCCACACTGCCAACCACTGTCACTATC---ACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGCTG------------------------AGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAG------------------------------------GGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTC

a score=9239
s chr3           92668893 581 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG------ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTG---CTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCCTGGGGTCATCCTATCCACCTCTAAATACCACTGA-TAGTCATAGAAACCCCATAGTCAGTAATTTTATTTCTATCAAACCCCCA--GATCTGGCCTACAGATCAAATCATCTTATAA-------GCTTTGACAGGAAAAAAACAAAACAAAACAGGTTCTTATTCTTTTT
s HiC_scaffold_1 95146579 522 + 233722169 TCAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTA-GGCTCACACTG--ACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCCTGTGGTGGCTTGGGCAGCAGCCACCACCCTCAGAACTG------------------------------GAGCCACAGCAGATCTCAGAACTGGAGCCACAGAAG---AAAGAGATCTG--------AGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGT-GGATACTTTAGA----TGCACTTG---GGACACTTAGGA-AGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCTacctaaactaaactaaaataatgaaattctttaaatattgaatactaaaatcatactttttatatatatacataaaagatTAATATTAGAGG------ATGCAATCATTTCAAT-------AGCCTTCAACGACCTG-----------AAATTTTCTTATAGTGAAActgcatagagaaaaaaaaaaacaatcaaaggtGTTTATTATCCTCTCT

a score=9042
s chr3           92668893 426 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatcc-----actgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGA---GGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGA--ATGCTCTGGGGCTGTGGAAGAATCATAATGCAA--ATTAGAACCAGGATCCTGGGG
s HiC_scaffold_1 95235727 345 + 233722169 TCAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAG--TCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------------------caggcagatatTGTGCTGGGCTCTTCTGGG---GGCACTTGGGGTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAATTTTACCTT------------GAAACAAAATGCAGATATTTGAACCCAGACTCTTGAG

a score=10077
s chr3           92668893 363 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatcca--ctgctg----ccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 95039921 297 + 233722169 TCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC

a score=13568
s chr3           92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95198813 320 + 233722169 TCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAG-----------AAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13315
s chr3           92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95215621 320 + 233722169 TCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGTTGCCTGTGGCAGTGGTGGAAGACACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAG-----------AAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13775
s chr3           92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGAT------GGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95149255 320 + 233722169 TCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAACAGTCAGGAGCCTGGTGCCTGTGTCGGTGATGGAAGAGACTG---GGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13762
s chr3           92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAG---------CTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95137981 320 + 233722169 TCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGTGGTGGAAGAGA---CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=7498
s chr3           92668894 358 + 160039680 ccacagcagccaccactgccaccactg------ctgccacagcatcca--ctgctg----ccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACA
s HiC_scaffold_1 95111232 285 + 233722169 CCATATCAGCAACAACTCTCAGCACTGTGGCTTCCACCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAAGAGTCCAAGCTCCACAGCCTGCACCTGTGGGACCTGCAACACCTGTGGTGGCTCAGGCAGTAGCCTCC---CTCAGGGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGGGctgggagcagagcaggaggaggcag---------caggcagACACTATGCTGGGCTCTTCTGGGGGCACGTTGGGG-------------------------AGGGGACTGGCACTGCTGCTAGTTATGTTGGCAGGACA

a score=7572
s chr3           92668923 332 + 160039680 gccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGA---TGG---CGACGGAGGGATCTG------CGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95124123 260 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAG------------------------------------CAGCCCCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGGAGGAA----GGCATGATGCT-----GGACACTGCAGTGGACATTTTGGGGT---------------GCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCT

a score=8077
s chr3           92668986 275 + 160039680 GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACA--CAGGGGGGCACTTGGGAGGACACTTA---GGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTG
s HiC_scaffold_1 95358363 247 + 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCC------------------TCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCA---------------GGAAGAGCCTGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTG

a score=4067
s chr3           92669204 140 + 160039680 GACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAG-AATCATAATGC-AAATTAGAACCAGGATCCTGGGGTCATCCTATC-------CACCTCTAAATACCA
s HiC_scaffold_1 95460308 149 + 233722169 GGCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTTTTCAAGAGGAAGTCAATAGGCAATAGGAAGTCAATAGAATGCTAAGTTAAGTCCATGATTCCAAAGCGGTCCTTTTAAACTAACACTATGAAATACCA

a score=11468
s chr3           92679128 1686 + 160039680 ACCTATCACAAAACCATGTGGGTGTCATGAGGCAGGGCATCCCATCTCTAGCCACTGTATCACAGGCTGAGA-CAGAGCCCAGGATCAGAATAAAAGGACCTATGGACAGGGTGCTTCCATCCACTCACTGGCTGAGAAACCCACAGATCTTGTGCTACCCTTCATCTTGGTAAGTGTCTACTACAGGTAAGGGCAGAGACT--GCAGAGTGAAGC-CAGACTAGAGATAGACAGGAAACTAGGAAGAATTCCTGGGCCTTG--TGGCCACATTGATATG-TCATGTTCAAATGTGAGGTTAAGGCAATGGCAGCATAGTCAAA-CACTAGCCACAGCCGTGGTTCTGAGAGACATGGGAAAGCATTGATTGGATACTCAGATGGCTCTGGTGAGCACAAAGTAAGCTCTGTGTATGGGGCTCCATAGGATGAGATGATTAAGCACAGAGGACTGTACATCTGAAC---AGTTTCCAGGGGGGGTTGGCTTTTGAAGAAAAGGCTTCCCCT--CCTTACCAATGAAAAGCTAAGGACAGGAATGTCAGCAGTGTCTCATTTTGG---CTTGGGACAGAAAAAGAGCCCAGCTTCTG-GAATCCGTTCATATATTTCTCTGATCAATAGGACACCACCAGGATGGCACTGACCTTGCCACCATTAGTCTGAGCAGGTGCTGATTTGGATACATCTGAATCCTGCCCTCAGAACAGGGGATTGTGTTTCCAAGGAAT------------GTCTGAAAGGGTTTACACATTTGTCAG-------AGGCTGAG---CTAGAAGGTCCTTTGGAA-TGCTGACCTT-----------AAACTAAAATCATCTTTAAGT--------------AATGCTTGTTCTTTTCTTTATAATTCGTTATTTCTGAAGGAGCACGT-ATACATAGACTAAGA---GTAGCAGACCTTTTTAAA----------------------------TGTCATTAGATAA---TTATTT-------ACTGCTCCTGGATTACAAAA-------TAACCCCAGCATATCATGTG-----------CATGGGTTACTGATGTTTAAAGACGTGAAC---AGGATAGGACAACCTGTGAAAATATTATAAGTGAAATGACTATAGATGGTGTTTCTATGAAGATCAGGAAT-----------CCTTCTGGAGGGAGGGGGCAGAATTGG---TCAGGTAACCAGTGTCTTGTGTCTAACATGTA-TGTGAT--------TCTCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAG----CCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTC---CACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTG------TAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTC------TTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagtagc-----cagcagTCTGGAGACTGCTG---CTGACAAGTGCCATGAAGATCTCAAACATTCTATGCAGAGGAAGCCATGTTTGGAAGACCAGCCC-------ATGTTTTCTGCTCTCCTTTTCTTCGGTCCTTCA--TGTCTTCAT
s HiC_scaffold_1 95523058 1699 + 233722169 ACCTGTCACAGCACCATATGGGTGG-AGGAGGCAAGTCTTGCCATGCCAGAGCCCTGCCTCACACCCTGGGAGCAGAGCTCAAG-TCAGAATAAAAAGGCTCAGGGTCAGAGTGTTTCCATCCACTCACCTCTTGAAGTATCCAGAGATTCTGTGCTGCTTGTGACCTTGGTAAGTGTCCAGTGGGAACAGAAGCAGGGACTTCTCAGAGGTATGCTCAGACCAGAG-CATACGAAAACCCAGGAA-----CTTGAATTGTGCTTGGCAAGGAAGAGAGGAGCAAGAAAATTTGAAAGCAGAGGGTGATAG--GTAGAGTAAGATCAAGAGCAACTG-GGAGACTTTTAGAGCTGTGTGCTACAGTTTTAGAGAAACCAAATTGATTATAGT--------AGCTGATGATGTTTTTGCGATTGCAGGTAATAAAAATACTGGCCAC--TAGATT----ATCCTAACATGAGTATGTGATGgaaatataattttggaaatatagCCATGTctagttttagaaaaaaagtgCTGAGGACA----------------------TTGGTACTTAGAGGAAGAAAGACATAAGAACACCTGTGGGTCTGGTTAGAC---------CTCACAAGAAGATTGCTCGGA-GGAACAGAGCCTTGGATTAGTAGTCAGGAAA---------CTAGAAACTGATCAATAATGCACTGATAACATTAGG--------CCAACAAATTCACTTCTTTTGATTTTACGTTCTTCATTCATATGTTAACTTTGTTGGGACAAGTTACTGCAAGTTGCTTTGTAGTTACAGTTCTTCATATTCTTCAAaaccaaaat-gttttcaaatttcttccaaaaggaaatactttttttttt---------------tttcttaaagagtgCTTCATACCCAAACTGCTCCCTGTAATGGATATTTTCAGAAATCTTGGTGATGTGTCAGAATGAATGCTAACACTAGACAAAGTTTACTTCTGTGTCATTTCTCCTACACTTAGAGATTTTAATTAACAGTCACTCTTCTTGTGTTTGGAGATTATATGGCTTGACAATTTCTCAA---Atgagctttaaaataaaac------tcagaaggAAAGGACCTAACAGACTACAAAGAGGGATTAAAAAAAG-TCAGAGGTAATTTTCCTGACTTTCAAAATGAGAGAACCAGAAATTGAGCTGAAGTAATCAGTGTTCAGTG-CTAAAGTGTACTGTGGTCTGATATGTGTTTTACTTTCCCTCAGCTCCTGCATCT--------CTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGCCCTCCCAAGTGCC---CTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATG--CCCCCCAGTCTC----------------TTCT------TGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGA---GGTGGTGGCTGCT------GCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACAC-----------CGACACCAG-------AGCTCTGGCTGCT---GCAGCAGTGGCGGTGGCGGTGGCTGCt---gcagcagtggtggtggtggtggctgct---GCAGCAGTGGCGGGGGCGGTGGCTGCTGCAGCAGTGGCGGTGGTAGTGGCCAGCAGTCTGGGGGCTCTGGTTGCTGC--TGCTGACCTGAGCCAAACGACCTCAGAGAAGCAGTGCTGGAGGAACCAACATGCAGAAAACCTGTTCCTCCCTGCTCACCCTCCCTCCTTTATCTGTCTTCAT

a score=25834
s chr3           92679134 1483 + 160039680 CACAAAACCATGTGGGTGTCATGAGGCAGGGCATCCCATCTCTAGCCACTGTATCACAGGCTGAGACAGAGCCCAGGATCAGAATAAAAGGACCTATGGACAGGGTGCTTCCATCCACTCACTGGCTGAGAAACCCACAGATCTTGTGCTACCCTTCATCTTGGTAAGTGTCTACTACAG------GTAAGGGCAGAGACTGCAGAGTGAAGCCAGACTAGAGATAGAC-------AGGAAACTAGGAAGAATTCCTGGGCCTTGTGGCCACATTGATATGTCATGTTCAAATGTGAGGTTAAGGCAATGGCAGCATAGTCAAACACTAGCCACAGCCGTGGTTCTGAGAGACATGGGAAAGCATTGATTGGATACTCAGATGGCTCTGGTGAGCACAAAGTAAGCTCTGTGTATGGGGCTCCATAGGATGAGATGATTAAGCACAGAGGA-CTGTACATCTGAACAGTTTCCAGGGGGGGTTGGCTTTTGAAGAAAAGGCTTCCCCTCCTTACCAATGAAAAGCTAAGGACAGGAATGTCAGCAGTGTCTCATTTTGGCTTGGGACAGAAAAAGAGCCCAGCTTCTGGAATCCGTTCATATATTTCTCTGATCAAT-AGGACACCACCAGGATGGCACTGACCTTGCCACC--ATTAGTCTGAGCAGGTGCTGATTTGGATACATCTGAATCCTGCCCTCAGAACAGGGGATTGTGTTTCCAAGGA----------ATGTCTGAAAGGGTTTACACATTTGTCAGA----------------------GGCTGAGCTAGAA-------GGTCCTTTGGAATGCTGACCT-TAAACTAAAATCATCTT-TAAGTAATGCT------------TGTTCTTTTCTTTATAATTCGTTATTTCTGAAGGAGCACGTATACATAGACTAAGAGTA---------------------------------GCAGACCTTTT---TAAATGT----CATTAGATAATT--------ATTTACTGCTCCTGGATTACAAAAT-AACCCCAGCATATC----ATGTGCATGGGTTACTGATGTTTAAAGACGTGAACAGGATAGGACAA----CCTGTGAAAATATTATAAGTGAAATGACTATAGATGGTGTTTCTATGAAGATCAGG-AATCCTTCTGGAGGGAGGGGGCAGAATTGGTCAGGTAACCAGTGTCTTGTGTCTAACATGTATGTGATTCTCTCACAGCTCCTGAACACCCATA-----ACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCAC---AGCTCTGGATgctgtag-cagtggt--ggcagcagtggctgctgtggcagcagtggtgg-cagcagt-----ggctgctg
s HiC_scaffold_1 95540306 1499 + 233722169 CACAATATCATGTGGGTGGCAGGAGGCGGGTCCTTTCATGCCTGGGACCTGTCTCAT--GCTAAAGAAGAGCTCATGGGCCCAATAAAAGGGCACAGGAACAGAAGGCCTCCATCCACTCACCTCCTGAGGTGTAAAGAGATTCTGTGCT-CCTGTGACACTGGTAAGTCTCCATTGAAAATAGCAGTAGGAGAGGTGGCTGGAAAGGGACCTCAGTTGAGAGGGGTACCTTTCAGAGGA------GGAGAATT-----------------------TAGGGAAGACTAAAAGATGGGAACAAAACAAGGCT------------------CTGCAGCAGTAA-----AGAAACGagggaaaatatatat-gtatatgccttGGGTTCTGGAGAGAACAAATTTCTCTGAGTGCAGTAGGCTCATCAGGACAAGAGCCACGGAAACAGAGACTCCCTCCATTTGGACAG------GATGGAGTATACCTCTGA-GAATACATCCCTGTTCCTGAC--------AGCAAGGGAAGAGAAAACCA--AGTG-CTTTTCTGGGCTAAGGAAACTCACACATCTAGGAGTGTGGAGTTTGTT--GGTATTTCTCAAGTTAATTAGGATACCAC----ATGTCTGAGACCT-GCTAACTTATAAACCCCAGTTAGCTGTGAACTGAGGACATCTGAGCTCTGGACT--GAACCTAGCTCTGGACTGCCTGAGATTCAAGCCCCACGTCTGCAGGATTTGATAAGTTTGTTAGTCTCTTCTCTGAGGGAGTAAGCTGACTGACCTGGTATTCTCTAGATCCTTAGCAACCCTGACCTGCATGATAAGATCATCTTATAGGTTATGACAAGAAGAAAtgatgctttttcttttaaaaaatattttccctgaa--aTTGGGCAATTTTAGTCTCAAGATGTTTgcaataattttctttctctcatttcctcCCACAAATCTTTTACTTGAATATGTTCTATAAGATTTTTTGGTCTCAGTTTGCTATTGTTGTATAACAATGTCAATTCTTATGCAACTTCTATGTGCATG------TAGAATTCAGAGAGATAAATGTGATGGTGTAAGAATATGGAGAAAGCATCAGAAATAAAACCACTTGAGATGATGTTTCTATG--GCTCAAGTGATGCTAAGAGAATCAGAGTGCCCAA------ATGTGACCTGTGGTCAAGGTCTAATTTGTATTTGATTCTCTCTTAGCTCCTGAATTTCTACTCACCTACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAATGCCCTCCCAAGTGCCCCACC------------------------CCAAAATGCCCCCCAAAGTGTCCCCCTAAGG---CCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGTTGCAGCTCTGGTAGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCGCCGCAGGTC---CCACCGCCATAGACACCAGAGCTCTGGCTGCTGCagccagccctcgggaggctccAGCTGCTGTGGAGGGGGAAGCAGCCAACAGTCTGGAGGTTGCTG

a score=18146
s chr3           92680177 446 + 160039680 GAGGGAGGGGGCAGAATTGGTCAGGTAACCAGTGTCTTGTGTCTAACATGTATGTGATTCTCTCACAGCTCCTGAACACCCA--TAACTG---AGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagc---------agtggtggcagcagtggctgctgtggcagcagtggtgg-cagcagt----ggctgctgtggcag
s HiC_scaffold_1 95575930 408 + 233722169 GAATGAGCGGGCAG---------GGTGGCCTGTTTCCTGCATCTAACTTGAATTTAACTCTCCTTCAGCTCCAGAACATCTGACCAGCTGTGGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCACCTCCCAAATGCACCCCCAAGTGCCCCACC------------------------CCAAAATGCCCCCCAAAGTGTCCGCCTAAGTGCCCCCCAGTCTCTTCCTGCTGCAGTGTCAGCTCTGGGGGCTGCTGTGGCTCC------------------AGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGTCTGAGCCACCACAGGCGCCAGAGGTCCCACCACCACAGACACCAGAGCTCTGGCTGTTGCAGCCAGCCCTCGAGGGGCTCCA------GCTGCTGTGGAGGGGGGAGTAGCCAGCAATCTGGGGCTGTTGCTGAAG

a score=30121
s chr3           92680207 772 + 160039680 AGTGTCTTGTG-TCTAACATGTATGTGATTCTCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCA---TCGCCATCGTCAC---AGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagtagccagcagTCTGGAG---------ACTGCTGCTGACAAGTGCCATGAAGATCTCAAACATTCTATGC-AGAGGAAGCCATGTTTGGAAGACCAGCCCATGTTTTCTGCTCTCCTTTTCT------TCGGTCCTTCATGTCTTCATCTGTGAAATGCTGAAA---TTCTATATCAAGTTCTAA--AACTGTCCCAATGACCTA-ATCCCTTTCTTCTTCAGTATTTTGTGATAATAAAGTCTTCTTTATTGAGTCTACCCAAACTCTTGTTTATCTTGGTCAGGGCTGCTATCACATATTAGTTTTAACATCTGGGG
s HiC_scaffold_1 95524194 741 + 233722169 AGTGTACTGTGGTCTGATATGTGTTTTACTTTCCCTCAGCTCCTGCATCTCTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGCCCTCCCAAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCC------------CCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGA------------------GGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCt---gcagcagtggtggtggtggtggctgct---GCAGCAGTGGCGGGGGCGGTGGCTGCT---GCAGCAGTGGCG---------------GTGGTAGTGGCCAGCAGTCTGGGGGCTCTGGTTGCTGCTGCTGACCTGAGCCA-AACGACCTCAGAGAAGCAGTGCTGGAGGAACCAACATGCAGAAAACCTGTTC---CTCCCTGCTCACCCTCCCTCCTTTATCTGTCTTCATTGTCCTAGGCTCTGAAAGGATGAGCTGTTCCTTTGGAAGGTAATGATTTACT-TCCAAATGGTCAGTTTCTCACTCCTCttctatatttctaaataataaagtATTCCCTGCAGAGCCTCACCAGCCTCTTGTTTCTTTT-GTCAGCATCATTCTCACAGGTCAGAGTTAGCAAACAGGG

a score=12094
s chr3           92680219 407 + 160039680 CTAACATGTATGTGATTCTCTCACAGCTCCTGAACACCCA--TAACTG---AGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctccc---aagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcag--tggtggcagcagtggctgctgtggcagcagtggtggcagc---------agtggctgctgtggcagcag
s HiC_scaffold_1 95586299 355 + 233722169 CTGACTTGTATTTGACTGTCCCTCAGCTTCAAAACACCTGATCAGCTGTGGAGATGTCCTTCTAGCAGAACCGGCCACAGTGCCAGCCCCCTCCCAAGTGCACCCCCAAGTATCCTACCTCTAA-----AGGCCCCAAAGT---------------------AGTGTCCCCCTAAGTGGCTCCCAGTCTCTTCCTGCTGCAG----------------------------------GGT--------CAGTTCTGGGGGCTGCTGCAACTCTGGGGGTAGTGGCTGCTGTCTGAGCCACCACAGGCACTGCTGGTCCCACTGCCACAGACATGAGAGCTCTGGCTGCTGCAGCCAGCTGCTGGGGTCTCCAGCTGCTAT---AGAGAGGGTGGCAGCCTACAATCTGGAGGCTGCTGTTGAAGTGG

a score=9501
s chr3           92680235 382 + 160039680 TCTCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtgg----cagcag--tggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 95088662 318 + 233722169 TCTCTCCAGGTTCCCTGACTGC----ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCTCAAGTGCCCCTCC---------CCCAAATGCC---CCAAGAAGAgcccagcacagtgtctgcctg---------------------ctgcctcctcctgctCTGCTACCTGCTCTGGGGGCTGCGGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCATAGCTCTGGGGGCTGCTG

a score=9463
s chr3           92680235 385 + 160039680 TCTCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtgg----cagcagt-----ggct---gctgtggcagcagtggtggcagcagtggctgctgtgg
s HiC_scaffold_1 95074804 327 + 233722169 TCTCTCCAGGTTCCCCGACTGC----ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCCTCC---------CCCAAATGCC---CCAAGAAGAgcccagcacagtgtctgcctg---------------------ctgcctcctcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGTGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGCCTGCTGCTGACCTGG

a score=8953
s chr3           92680235 382 + 160039680 TCTCTCACAGCTCC-TGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcag------tggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 95108197 317 + 233722169 TCTCTCCAGGTTCCCTGACCGC-----ACTGAGATGTCCTGCCAGAAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGTCCCTCC---------CCCAAATG---GCCCAAGAAGAgcccagcacagtgtctgcctg---------------------ctgcctcctcctgctctgctccctgctct-gGGGCTGCGGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGTAGTCTGGGTGCTCTGGCTGTGGCCACAGCTCTGGGGGATGCTG

a score=9510
s chr3           92680235 379 + 160039680 TCTCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtg---gtggcagcagt----ggct---gctgtggcagcagtggtggcagcagtggctg
s HiC_scaffold_1 95247537 316 + 233722169 TCTCTCCAGGTTCC----CACACTGCACTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCCCTCC------------------------------------CCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcctcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTC------------------------------CATCCCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAGGGTCTGCAGTCTGGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTG

a score=11582
s chr3           92680236 390 + 160039680 CTCTCACAGCTCCTGAAC----ACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTG------TGTCTTC--------CTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCT--CTGGATgctgtag-cagt-----ggtggcagcagtggctgctgtggcagcagtggtggcagcagt-----ggctgctgtggcagcag
s HiC_scaffold_1 95567444 393 + 233722169 CTGTCTCAGGTCCTGAATTATTGCCTTTGA---AGATATCCTACTGGTAGAATCAGCAATAGTGCCAAACACCTCCCAAGTGTATTCCCAAATGTGCTGACAAGTGTCCCAACCCAAAATGCCCTTCAAAGTGTCCACCTAAGTGGCCCC---AGTCTCTTCTTGCTGCAATGTCAGCACTGAGGGCTGCTGTGACTCCAGCTCTGGGAACTGCTGTAGCTCTAGTTCTGAGGGCTGCTGAAGTTCTGTTGGCTGCTGCAGCTC-TGGAGTGGTGGCTACTGCCTGAACCACCACAA-------------------TGCTATAGTTGCCACTGCCTGAGGGCTACAGACAGCCCTCAAGGGGCTCCAGCTGCTGTGGAGGGAGCAGCA--AGCAGCAGTCTGGAGGCTGTTGTTAAAGTAG

a score=15308
s chr3           92680237 513 + 160039680 TCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCC--CCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcagtggctg---ctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgt-ggcagcagtggtggcagcagtggctgctgtggcagtagccagcagTCTGGAGACTGCTGCTGACAAGTGCCATGAAGATCTCAAACATTCTATGCAGAGGAA
s HiC_scaffold_1 95421628 417 + 233722169 TCTCTTAACTCTTG-----------CCAAAATGTCCTGCCAGCAGAACCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTTCCCCTAAGTGCTCCCCTAAGTGTC---------------------------CCCCTAAGAGTACCTCCAAGTGCTCAGCCTCATGCCTTCCTCCAGT--------CTCTAC---CTGCTGTAGCTCCAGTTCAGGGGACTGCTGTAGCTCTGGAAG------------------TGGGGGCTGCTGCCTGAGCCACCACAGGCCCCACCGATCTCTTCGTCACAGACACCAGAGCTCTGGCTGCTGCAATAGTGGCAGTGGTGGTGCCTGTACCTGTGGCA------------------GTCACTGTACCTGCAGTAGTGATTGCAACTGCCGCAATAGACAGCAGT-CTGGTGGCTCTGGCTGTTGC---------------TCTGGAGGCTACTGATGGCCGG-GCCATAAGAAGCACAAAGAAACAGCACTGAAGAA

a score=13192
s chr3           92680250 367 + 160039680 GAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCC--TCCCAAGTGCCCCCCTG-TGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCAC--AGCT-CTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 95313521 330 + 233722169 GAAAAGTCACAAC-AAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACTCCAAAATGCC---CACCAAAGTGCCCTCCAAAGTGCCCACCCCAATGCCCAGTGCCATGCCCTCCTCTGGTGTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGG------------------------------------GGATGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTG--AGTGTGAGCC-CAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTG

a score=12945
s chr3           92680250 367 + 160039680 GAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCC--CTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCAC--AGCT-CTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 95352916 330 + 233722169 GAAAAGTCACAAC-AAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGC---------------ACCCCAAAATGCCCACCAAAGTGCCCTCCAATGTGCCCACCCCAGTGCCCAGAGCCATGCCCTCCT--------CTGGTCTCTTC---CTGCTGTGGCTCCAACTTGGGCCACTGCTGTGGCTC------------AAGCTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTG--AGTGTGAGCC-CAATGGgggctctggctgctgccatgGCTCTGGGGGCTGCTG

a score=9033
s chr3           92680256 271 + 160039680 CCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAA---TGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATC
s HiC_scaffold_1 95193420 247 + 233722169 CTGCAACTGAGATGTCCTGCCAGTAGTACCAGCAGCAGTGCCAGCCCCATCCCAAGTGG------------CCTCTAAAGTGTCTTGCCCATAAGTGTTTCCTCAAATGATTCTCAAATGTTTGTTCTCCTAACCGCACCC-----------TGCTGATCTCCAGGCTCTTC---CTGCTGTTGCTC-AGCTACTGAGACTGTAGTAGCTCTTGAGGATGATGCAGTTCTTGGGATGGTAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTC

a score=9544
s chr3           92680261 357 + 160039680 ACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACA-GCTCTGGATgctgta--gcagtggtggcagcagtgg-ctgctgt-----ggcagcagtggtggcagcagt------ggctgctgt
s HiC_scaffold_1 95282192 297 + 233722169 ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCTGCCCCCTCCCAAGTGCCCCGCC---------CCCAAATGCC---CCCAGAAGAGCCCAGCACAGTATCTACCTG---------------------CTGctccttcctgctctgctcccagcTCTGGGGGCTGCAGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTC---------CCACAGGTGCAGGCTCTGGAGATCAGACTCCTGTGATGGCGACAGTGGTCTGCAGTCTGGAGACTTTGGCTGTGGCCACAGCTCTGGGGGCTGCTGT

a score=9120
s chr3           92680262 355 + 160039680 CTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCT---GTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTT-------CATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 95344267 312 + 233722169 CCAACATGTCCTACCAGCAAAACCAGTAGCAATTCCAGGC-CTTCCAAAGTGT---CCCAAGTACA-TCCAAAATATC----CACAAAGTGTGTTCCAAAGTACCCACCCCAGAGCCCAGCATAATGCACTCCTTGGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGTTCT------------------------------------GGGGGTGGTGGCTGTTGCCTGAGCCACCACATGCCCAG----TCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTG--AGT-GTGACCCCAGTGGaggctctggctgctgccctggC-TCTGAGGCTGCTG

a score=15343
s chr3           92680262 344 + 160039680 CTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGT------------GCCCCCCTGTG---TCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCAC--AGCT-CTGGATgctgtagcagtg------gtggcagcagtggctgctgtggcagcagtggtggcagc
s HiC_scaffold_1 95388587 341 + 233722169 CCAAGATGTCCTGCCAGCAAAACCAGCAGCAGTACCAGCCCCTTCCTAAGTGTCCACCCAGGTGC---------------ACCCCAAAGTGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGG------------TGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACCAGGCTCCTGACTGCTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGC

a score=24121
s chr3           92680262 448 + 160039680 CTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGC---CATCGTCAC---AGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagtagccagcagTCTGGAGACTGCTGCTG
s HiC_scaffold_1 94993102 382 + 233722169 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCTAAGTGCACCCCCAAATGCCCACCCAAGT-----------------------------CCCCCTG--------CCCA-----CCTCCAGCGTCTTCCTGCTGTAGCCTGGGCTCTAGCAGCTGCTGTGGCTCCAGCTCTGGAGGCTGCTGCAGCTCGGGTGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAAGCCCCGCCGATCTCTTCTACGCAGACACCGACACCAGAGCTCTGGCTgctgcagcagtggtggcagtaGTGGCTGCTGTGGCA---------GTAGCAGTAGCTGCTGtagcagcagtggtg---gcagtggCTGCT---gcagcagtggtg---------------gtggcagtggccaGCAGTCTGGGGGCTCCAGTTG

a score=27296
s chr3           92680265 714 + 160039680 AGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCA---TCGCCATCGTCAC---AGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagtagccagcagTCTGGAG---------ACTGCTGCTGACAAGTGCCATGAAGATCTCAAACATTCTATGC-AGAGGAAGCCATGTTTGGAAGACCAGCCCATGTTTTCTGCTCTCCTTTTCT------TCGGTCCTTCATGTCTTCATCTGTGAAATGCTGAA--ATTCTATATCAAGTTCTAAAACTG--TCCCAATGACCTA-ATCCCTTTCTTCTTCAGTATTTTGTGATAATAAAGTCTTCTTTATTGAGTCTACCCAAACTCTTGTTTATCTTGGTCAGGGCTGCTATCACATATTAGTTTTAACATCTGGGG
s HiC_scaffold_1 95463630 680 + 233722169 AAATGTCCTGTCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTCCCAAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCC------------CCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGA------------------GGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCt---gcagcagtggtggtggtggtggctgct---GCAGCAGTGGCGGGGGCGGTGGCTGCT---GCAGCAGTGGCG---------------GTGGTAGTGGCCAGCAGTCTGGGGGCTCTGGTTGCTGCTGCTGACCTGAGCCA-AACGACCTCAGAGAAGCAGTGCTGGAGGAACCAACATGCAGAAAACCTGTTC---CTCCCTGCTCACCCTCCCTCCTTTATCTGTCTTCATTGTCCTGGGCTCTGAAAGACTGAGCTGTTCCTTTGGAAGGTCATGATTTACTTCCAAATGGTCAGTTTCTCACTCCTCttctatatttctaaataataaagtATCATGCA--GAGCCTCACCGGCCCCTTGTTTCTTTT-GTCAGCATCATTCTCACAGGTCAGAGGTAGCAGCCAGGG

a score=7590
s chr3           92680316 185 + 160039680 cccccaagtgccctcccaagtgc-cAGACCCCGAAGTGTCCA---CCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGC------TCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGC
s HiC_scaffold_1 95567513 184 + 233722169 CTCCCAAGTGTATTCCCAAATGTGCTGAC----AAGTGTCCCAACCCAAAATGCCCTTCAAAGTGTCCACCTAAGTGGCCCCA-GTCTCTTCTTGCTGCAATGTCAGCACTGAGGGCTGCTGTGACTCCAGCTCTGGGAACTGCTGTAGCTCTAGTTCTGAGGGCTGCTGAAGTTC------TGTTGGCTGCTGC

a score=12041
s chr3           92680355 294 + 160039680 CACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcagt--ggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgtg
s HiC_scaffold_1 95525296 279 + 233722169 CACCAAAATGCTCTCCCAAGTGTCCCCCTAAGTGCCCTCCAGTCTCTTCCTGCTACAGTTTCAGCTCTAGGAGCTACTGTGGCTCTAGTTCCGGAAGCTGTGGCAGC-CTGGTAGCTGCTGCAGCTCAGGGAGTGGTGGCTGCTGCCTGAGCCACCACAGGCACCAGAGGTCCCACTGCCACAGACACCAGAGCTCTGGCTGCTGCAGC--------CAGCCCTCAGGCTGCTCCAGCTGCTGTGGATGAGGAAGTAGC--------CAGCAATCTGGAGGCTAATTGCTGATGTG

a score=3355
s chr3           92680363 233 + 160039680 TGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCT-----CTTCATCGCCATCGTCACAG--CTCTGGATgctgtagcagtggtggcagc---------agtggctgctgtggcagcag
s HiC_scaffold_1 95586437 217 + 233722169 TGTCCCCCTAAGTGGCTCCC--AGTCTCTTCCTG-------CTGCAGGGTC---AGTTCTGGGGGCTGCTGCAACTCTGGGGGTAGTGGCTGCTGT-----------CTGAGCCACCACAGG-------CACTGCTGGTCCCACTGCCACAGACATGAGAGCTCTGGCTGCTGCA--GCCAGCTGCTGGGGTCTCCAGCTGCTATAGAGAGGGTGGCAGCCTACAATCTGGAGGCTGCTGTTGAAGTGG

a score=9443
s chr3           92685671 474 + 160039680 CACCACTTTTCTAGAT---TCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTG---CTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGA
s HiC_scaffold_1 95146545 390 + 233722169 CATCAATTTTCTCAGTAGCTCCTCCTGACCCAGCTCAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTA-GGCTCACACTG-----ACAGCAGTCAGGAGCCTGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGACT----GGGCCTGTGGTGGCTTGGGCAGCAGCCACCACCC------------------------------------------------------TCAGAACTGGAGCCACAGCAGATCTCAGAACTGGAGCCACAGAAGAAAGAGATCTGAGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGTG----GATACTTTAGA-TGCACTTGGG---ACACTTAGGAAG-GCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCTacctaaactaaactaaaataatgaa

a score=9031
s chr3           92685673 472 + 160039680 CCACTTTTCTAG--ATTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTG---CTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGA
s HiC_scaffold_1 95208078 386 + 233722169 CCATTTTCTCAGTAGCTCCTCCTGACCCAGCTCAGCAGCAG-CCTCAGAGccagggcagcagccagagcctCCACTGGGGTCAC-ACT-----CACAGCAGTCAGGAGCCTGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGACT----GGGCATGTGGTGGCTCAGGCAGCAACCACTACCCCCAGAACTG------------------------------GAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTGTG----GATATTTTGGA-TGTACTTGGG---ACACTTTGGAAG-GCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAACGAGAATAatgaa

a score=7803
s chr3           92685674 467 + 160039680 CACTTTTCTAG--ATTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGA---TGGCGAC-------------GAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTG------CTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAA
s HiC_scaffold_1 95124075 349 + 233722169 CATTTTCCTAGTAGCTCCTTCTGGTCTAGCTCAGCAACAGCACTCAGA------------------------------------------GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAG----GCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAGCCC------------------------------------CCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGG---------------------AGGAAGGCATGATGCTGGACACTGCAGT---------------GGACATTTTGGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAAGAGAGTTCAGTGAGTCCTCCTAAACTAGAAGAAGGAAA

a score=13822
s chr3           92685676 430 + 160039680 CTTTTCTAGA-TTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95137954 347 + 233722169 CCCTTCCAGAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGA-CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAG---GAAGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13434
s chr3           92685676 430 + 160039680 CTTTTCTAGA-TTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95215594 347 + 233722169 CCCTTCCAGAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=12964
s chr3           92685676 430 + 160039680 CTTTTCTAGA-TTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95149228 347 + 233722169 CCCTTCCAGAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAACAGTCAGGAGCCTGGTGCC-----------------------TGTGTCGGTGATG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCC------------------------------------------------------CCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13038
s chr3           92685678 428 + 160039680 TTTCTAGA-TTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95198788 345 + 233722169 TTTCAAGAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAATCAGGAGCCTGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCC------------------------ACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=6603
s chr3           92685836 276 + 160039680 GCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacactta---ggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTG
s HiC_scaffold_1 95358374 236 + 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAGGA---AGAGCC----------------------------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGG------------TCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTG

a score=15861
s chr3           92689431 719 + 160039680 AAAATGAGCTGGTGCAGAAGGCCAAGCTGGCCGAGCAGGCAGAGCGATATGATGACATGGCAGCCTGCATGAAGTCTGTCACTGAGCAGGGAGCTGAGCTGTCGAATGAGGAGAGAAACCTTCTCTCTGTTGCTTATAAAAAAC--GTTGTAGGAGCCCGTAGGTCATCGTGGAGGGTCGTCTCAAGTATTGAGCAGAAGACGGAAGGTGCTGAGAAAAAGCAGCAGATGGCTCGAGAATACAGAGAGAAGATCGAGACGGAGCTGCGTGACATCTGCAACGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCCCAATGCTTCGCAACCAGAAAGCAAAGTCTTCTATTTGAAAATGAAGGGTGACTACTACCGTTACTTGGCCGAGGTTGCTGCTGGTGATGACAAGAAAGGAATTGTGGACCAGTCACA-GCAAGCATACCAAGAAGCATTTGAAATCAGCAA-AAAGGAGATGCAGCCGACACACCCCATCAGACTGGGTCTGGCCCTCAACTTCTCTGTGTTCTATTACGAGATCCTGAACT--CCCCAGAGAAAGCCTGCTCTCTTGCAAAAACAGCTTTCGATGAAGCCATTGCTGAACTTGATACATTA-AGTGAAGAGTCGTACAAAGACAGCACGCTAATAATGCAGTTACTGAGAGACAACTTAACATTGTGGACATCGGATACCCAAGGAGATGAAGCAGAAGCAGGAGAAGG
s HiC_scaffold_1  6311766 678 + 233722169 AAACTGAGCTGATCCAGAAGGCCAAGCTGGTCAATCAGGCCAAGTgctgtgaaggtatggtcaatcACAGGAAGGCAGTGACAAGGCAGGCTGCCAAGCTGTCCAATGGGGAGTGTAGCCTGCCCTTTATGGCCTACAGAAATTTGGTCATGGG---CTGCTGGTAAGCCTGGAGAGTCATATCTAGCATTGAGTGGAAAACTGACACCTCCAACAAGAAGCTGTCAAT---TAAGGAGTACC---------------------------CCATCTGCATTACTGCCATGGAATTGTTGGACAACTATTTAATGGACAATGTAACTACTTCAGAGAGTAAATTCTTCTAtctgaaaaggaagagagattacTTGCAAGACCTTGCTGATGTTGCATATGGTGATAAtagaaaaaa----gttaataattcCCAAGGAACTTTACAAAGAAGCATT--AAATATGCAAGAAAAGGGATGCAACCCACACATCAATCTTGCCTGGGTTTGTCCTTGGCATTCTGCAT---TTACTATGAGATCCTTAATAAACCCCAAACTTGCCATGCACCCTGACTAAAAA------TGGCAGAACTATTTCAGAGCTTCATATACTGTAAGGAACACTCCTACAAAAACAGCACTCGCATCATGCAGCTGCTCAGAGACAACTTAATATTAGGGAATTAAGACAGTGCAGGAGAAAGACATGATGCTGCAGAAGG

a score=9357
s chr3           92707454 589 + 160039680 CCTGAGGAGAACATAGAACATTTCCCAGGAGATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAAGCAGGAGGAGAGGACATCAAACAATGGAGAATCTTCTGAGCATATGTTCCTCCTGTCCCATTTGTCTGAAGTCTTCCTCACC------CAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 95025730 436 + 233722169 CCTGCAGAGAACTCAGAAC-TTTCGCAAGAAACATC------TCAGTGCTAAAGC---AGATTGAAGTATATGGAAAAAACTGCAAGGGACAGAGAACAGTCCTTGGACTT--------TGTCTCCTTTA---AAACTTCTCATCACCGCTGCTAAGTTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----------CCGCAGCCTGCAC--CTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTC----------TTGGG-----GCATTTGGG---------GGAAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=13081
s chr3           92707587 468 + 160039680 GAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95198794 353 + 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAATCA-----------------------GGAGCC--TGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA------------------------GAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=13306
s chr3           92707587 468 + 160039680 GAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95215602 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA------------------------GAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12674
s chr3           92707587 453 + 160039680 GAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95149236 339 + 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAACAGTCA-----------------------GGAGCC--TGGTGCC-----------------------TGTGTCGGTGATG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGG---------------------AAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13469
s chr3           92707587 468 + 160039680 GAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95137962 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGA-CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGG---------------------AAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=9094
s chr3           92707599 443 + 160039680 ACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCA
s HiC_scaffold_1 95039914 305 + 233722169 ATCCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----------CCGCAGCCTGCAC--CTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTC----------TTGGG-----GCATTTGGG---------GGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=7378
s chr3           92707651 391 + 160039680 gctgc--caccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCA
s HiC_scaffold_1 95263985 294 + 233722169 GCTGCATCCCCAGAGTTGTGACCACAGCCAGAGCCCCCAC-ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGCTG------------------------AGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacagtgc----------------------tgggCTCTTCTGGGGGCACTTGGGGGAGGGGCATTTGAGAAGG------------------------GGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=8031
s chr3           92707673 374 + 160039680 cagccactgctgccaccactgctgccacagc---agcc------actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGT
s HiC_scaffold_1 95235728 296 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------caggcagatatTGTGCTGGGCTCTTCTGGGGGCACTTGGGG---------TAGGGAA---------------ACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=7411
s chr3           92707696 375 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGA---TGGCGAC-------------GAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG-------CTGTGGGTGTTCAGGAGCTGTAAGAGAG
s HiC_scaffold_1 95124123 298 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAG----GCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAGCCCCCAGAGCTG------------------------------------------------------------GAGCCACAGCAGGAAAATACTGGAGGA---------------------AGGCATGATGCTGGACACT----------GCA-----GTGGACATTTTGGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAAGAGAGTTCAGTGAGTCCTCCTAAACTAGAAGAAGG

a score=6534
s chr3           92707760 289 + 160039680 GATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcattt---gggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGG
s HiC_scaffold_1 95358364 249 + 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAGGA---AGAGCC----------------------------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAAT---------CACTTGAGGA---AACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGTAG

a score=4008
s chr3           92707990 50 + 160039680 GCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95460309 50 + 233722169 GCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTT

a score=13401
s chr3           92718907 458 + 160039680 GCAGCAATCCCCAGActgctggctactgccacaacagccactgctgccaccactgcttccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95137930 385 + 233722169 GCATCAGGCTCTAGACTACTGGATCC--CTTCCAGAGCTCTTCCTGGTCCAGCT----CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGA-CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAG---------------------CAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12989
s chr3           92718907 458 + 160039680 GCAGCAATCCCCAGActgctggctactgccacaacagccactgctgccaccactgcttccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95215570 385 + 233722169 GCATCAGGCACTAGACTACTGGATCC--CTTCCAGAGCTCTTCCTGGTCCAGCT----CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCC------------------------ACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=9717
s chr3           92718979 373 + 160039680 gctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCA
s HiC_scaffold_1 95039927 292 + 233722169 GCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG-ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------------------caggcagacactgtgctgggcTCTTCTTGG---GGCATTTGGG---------GGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=12962
s chr3           92718998 352 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95149259 316 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAACAGTCAGGAGCCTGGTGCCTGTGTCGGTGATG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAG---------------------CAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=12959
s chr3           92718998 367 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95198817 330 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCC------------------------ACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=8740
s chr3           92719001 356 + 160039680 cagccactgctgccaccactgctgccacagc---agcc------actgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGT
s HiC_scaffold_1 95235728 296 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------------------caggcagatatTGTGCTGGGCTCTTCTGGG---GGCACTTGGG---------GTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=8894
s chr3           92719024 357 + 160039680 gccacagcagccactgctgccaccactgctacAACATCCAGAGCTGTGACGA---TGGCGAC-------------GAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG-------CTGTGGGTGTTCAGGAGCTATAAGAGAG
s HiC_scaffold_1 95124123 298 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAG----GCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCC------------------ACAGAACTACAGCAGCCCCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGGA---------------------------------GGAAGGCA---TGATGCTGGACACTGCAGTGGACATTTTGGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAAGAGAGTTCAGTGAGTCCTCCTAAACTAGAAGAAGG

a score=8164
s chr3           92719088 271 + 160039680 GATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcggg---cattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGG
s HiC_scaffold_1 95358364 249 + 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAG---GAAGAGCC----------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGG------------TCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGTAG

a score=8882
s chr3           92737924 410 + 160039680 caccactgctgcca----cagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 95025850 316 + 233722169 CATCACCGCTGCTAAGTTCAGCAGCA------GCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG-ACTGCCG-----------ACCACTGTCACCATCAC---AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGG-----------------------------------GGAAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=8634
s chr3           92737938 396 + 160039680 cagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGG-------AGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGG---CCT----GGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 95146557 339 + 233722169 CAGTAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGC---CTCTACTAGGCTCACACTGACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACT----GGGCCTGTGGTGGCTTGGGCAGCAGCCACCA------------------------------------CCCTCAGAACTGGAGCCACAGCAGATCTCAGAACTGGAGCCACAG---------------------AAGAAAGAGATCTGAGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGTGGATACTTTAGATGCACTTGGGA---CACTTAGGA-AGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=7897
s chr3           92737938 431 + 160039680 cagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGG-------AGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGAGGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGG----CCTG---GCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG----CTGTGGGTGTTCCAGAGCTGTGAGAGAATCATAGA
s HiC_scaffold_1 95208087 377 + 233722169 CAGTAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA----GccagggcagcagccagagcctCCACTGGGGTCACACTCACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACT----GGGCATGTGGTGGCTCAGGCAGCAACCACTA------------------------------------CCCCCAGAACTGGAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTGTGGATATTTTGGATGTACTTGGGA---CACTTTGGA-AGGCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAACGAGAATAatgaa

a score=8562
s chr3           92737949 384 + 160039680 gctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCA
s HiC_scaffold_1 95039927 292 + 233722169 GCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG-ACTGCCG-----------ACCACTGTCACCATCAC---AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGG-----------------------------------GGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=10467
s chr3           92737968 380 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCA
s HiC_scaffold_1 95198817 332 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagc---ccCCAGTGGGCTCACACTCACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------------------------CCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTCCA

a score=10447
s chr3           92737968 380 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCA
s HiC_scaffold_1 95215625 332 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagc---ccCCAGTGGGCTCACACTCACAGCAGTCAGGAGCCTGTTGCCTGTGGCAGTGGTGGAAGACACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------------------------CCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTCCA

a score=10500
s chr3           92737968 380 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAG---------CTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCA
s HiC_scaffold_1 95149259 332 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagc---ccCCACTGGGCTCACACTCACAACAGTCAGGAGCCTGGTGCCTGTGTCGGTGATG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------------------------CCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTTCA

a score=10812
s chr3           92737968 380 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCA
s HiC_scaffold_1 95137985 332 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagc---ccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGTGGTGGAAGAGACTGCGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------------------------CCCCCAGAGCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTCCA

a score=7680
s chr3           92737971 367 + 160039680 cagccactgctgccaccactgctgccacaac---agtc------actactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGA---GGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGT
s HiC_scaffold_1 95235728 296 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATCAC---AGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGG-----------aggaagcagcaggcagatatTG---------------------------------TGCTGGGCTCTTCTGGG---GGCACTTGGGGTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=7550
s chr3           92737974 359 + 160039680 ccactgctgccaccactgct---gccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAG---GGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCA
s HiC_scaffold_1 95263994 285 + 233722169 CCAGAGTTGTGACCACAGCCAGAGCCCCCACACTGCCAACCACTGTCACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCCC---------------------TCAGAGCTTCAGC------------TGAGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacag---------------------------------tgctgggCTCTTCTGGG---GGCACTTGGGGGAGGGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=5925
s chr3           92737994 365 + 160039680 gccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGG------TGATGACAATGGAGAGATCTGTGGGG------TCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATT-TGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG-------CTGTGGGTGTTCCAGAGCTGTGAGA
s HiC_scaffold_1 95124123 295 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAG------------------CAGCCCCCAGAGCTGGAGCC------------------------------------------------ACAGCAGGAAAATACTGGAGG---------AAGGCATGATGCTGGACACTGCAGTGGACATTTTGGGGT---------------GCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAAGAGAGTTCAGTGAGTCCTCCTAAACTAGAAGA

a score=6485
s chr3           92738058 282 + 160039680 GATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAG-CTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGG
s HiC_scaffold_1 95358364 249 + 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAG---GAAGAGCCTGGAGATA-AGCAAGGGGCTG--CTCAGG--AGAGCAAGCA---ACTGGGAATCACTTGAGGAAACATTT--ATGGGTA---------------------AGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGTAG

a score=12680
s chr3           92750438 578 + 160039680 TTCAGAACATTTTCCAGGAGATTTCAGCAACTC---------------AGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCACCCAATGGAGAGTCTTCTGAGCGTGTTCTCCTCCTGTACCATTTGTCTGAAGTCTTCCTCATGCAGGTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95215490 465 + 233722169 TTCACAGGAGTCTCTGGGAGCCTTCAGGATCCCTACTGACCTATGAATGGAGGGGAATGGAATGGGGGATGCATAAGGATG---CATCAGGCACTAGA---------------------CTACTGGATCCCTT-CCAGAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGA------------GCcatggcagcagccagagcccCCAGTGGGCTCACACT------------------------CACAGCAGTCA-----------GGAGCC--TGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12863
s chr3           92750576 425 + 160039680 AGGTCAGCAGCAGTCCCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactg------ctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95149198 377 + 233722169 AAGGCTGCATCAGGCTCTAGACTACTGGATCCCTTCCAGAGCTCTTCCTG-GGCCAGCTCAGC------AGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAACAGTCAGGAGCCTGGTGCC-----------------------TGTGTCGGTGATG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13180
s chr3           92750582 434 + 160039680 GCAGCAGTCCCCAGActgctggctac-tgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactg------ctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95137930 385 + 233722169 GCATCAGGCTCTAGACTACTGGATCCCTTCCAGAGCTCTTCCTGGTCCAGCT-------CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGA-CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=10347
s chr3           92750629 375 + 160039680 caccactgctgcca----cagcagccactgctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95025850 316 + 233722169 CATCACCGCTGCTAAGTTCAGCAGCA------GCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATC---ACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=8862
s chr3           92750643 396 + 160039680 cagcagccactgctgccaccact-----gctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACG-------AAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGA--------GGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG----CTGTGGGTGTTCAGGAGCTGTGAGAGAATCATGGA
s HiC_scaffold_1 95208087 377 + 233722169 CAGTAGCTCCTCCTGACCCAGCTCAGCAGCAGCCTCAG-AGccagggcagcagccagagcctCCACTGGGGTCACACTCACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGA----CTGGGCATGTGGTGGCTCAGGCAGCAACCACTACCCCCAGAACTG------------GAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTGTG----GATATTTTGGATGTACTTGGGACACTTTGGA-AGGCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAACGAGAATAatgaa

a score=9167
s chr3           92750643 361 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccac--------cactgctacagcATCCAGAGCTGTGACGATGGCGACG-------AAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95146557 339 + 233722169 CAGTAGCTCCTCCTGACCCAGCT-CAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTAGGCTCACACTG--ACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGA----CTGGGCCTGTGGTGGCTTGGGCAGCAGCCACCACCCTCAGAACTG------------GAGCCACAGCAGATCTCAGAACTGGAGCCACAGAAG---AAAGAGATCTG--------AGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGT-GGATACTTTAGA----TGCACTTGGGA---CACTTAGGA-AGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=8433
s chr3           92750654 354 + 160039680 gctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGT
s HiC_scaffold_1 95235733 291 + 233722169 GCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTC----CTGCAG--ACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------caggcagatatTGTGCTGGGCTCTTCTGGGGGCACTTGGGG---------TAGGGAA---ACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=8730
s chr3           92750654 349 + 160039680 gctgc--caccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95263985 294 + 233722169 GCTGCATCCCCAGAGTTGTGACCACAGCCAGAGCCCCCACACTGCCAACCACTGTCACTATC---ACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGCTG------AGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAG------------------------------------GGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=10027
s chr3           92750654 349 + 160039680 gctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95039927 292 + 233722169 GCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAGACTGCCGACCACTGTCACCATC---ACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=12644
s chr3           92750673 343 + 160039680 cagcagccactgctgccacagcagccactgctgccaccactg---------ctacagcATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 95198817 330 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACTCACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=8273
s chr3           92750687 331 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGA---TGGCGAC-------------GAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTCAG
s HiC_scaffold_1 95124123 273 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAG----GCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAG------------------CAGCCCCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGG---------------------AGGAAGGCATGATGCTGGACACTGCAGTG---GACATTTTGGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAA----GAGAGTTCAG

a score=8273
s chr3           92750751 259 + 160039680 GATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTA---GGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGG
s HiC_scaffold_1 95358364 249 + 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAG---GAAGAGCC----------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGTAG

a score=3750
s chr3           92750950 51 + 160039680 GGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95460308 51 + 233722169 GGCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTT

a score=9827
s chr3           92763270 578 + 160039680 TGAGGACAATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAG----AGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATC---GGGCAATGGATAATCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACC------CAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95025732 434 + 233722169 TGCAGAGAACTCAGAAC-TTTCGCAAGAAA------CATCTCAGTGCTAAAGCAGATT-------GAAGTATATGGAAAAAACTGCAAGGGACAGAGAACAGTCCTTGGACTTTGT----CTCCT----------TTAAAACTTCTCATCACCGCTGCTAAGTTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGC--------------------CCCCAG-----------------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGA------------------------------------AGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=10013
s chr3           92763312 545 + 160039680 AGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGAT----AATCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccact--gctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTG
s HiC_scaffold_1 95146500 405 + 233722169 AGAGAGTGTAATGAGGAAAGCATCAGGAGGTAA------TGGGCTCTGGATCATCAATTTTCTCAGTA---GCTCCTCCTG------------------------ACCCAGCTCAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTAGGCTCACACTG-----ACAGCAGTC-----------------------AGGAGCC--TGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGACT----GGGCCTGTGGTGGCTTGGGCAGCAGCCACCACCCTCAGAA------------------------------------CTGGAGCCACAGCAGATCTCAGAACTGGAGCCACAGAAG-----------AAAGAGATCTGAGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGT-GGATACTTTAGA----TGCACTTGGGA---CACTTAGGA-AGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTG

a score=8993
s chr3           92763312 571 + 160039680 AGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAATC----TTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgcca---cagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagcca-----ctgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggagggcatttaggggggcattttggagggcactttgggg----tctg---gcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG----CTGTGAGTGTTCAGGAGCTGTGAGAGAATCATGGA
s HiC_scaffold_1 95208030 434 + 233722169 AGAGAGTGTAGTGAGGAAAGCATCAGGAGGTAA------TGGGCTCTGGATCATCCATTTTCTCAGTA---GCTCCTCCTG------------------------ACCCAGCTCAGCAGCAGCCTC-AGA------------GccagggcagcagccagagcctCCACTGGGGTCACACT------------------------CACAGCAGTCAGGAGCCTGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGACT----GGGCATGTGGTGGCTCAGGCAGCAACCACTACCCCCAGAACTG------------------------------------GAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTGTGGATATTTTGGATGTACTTGGGA---CACTTTGGA-AGGCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAACGAGAATAatgaa

a score=13492
s chr3           92763313 547 + 160039680 GAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAATCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTC
s HiC_scaffold_1 95215539 416 + 233722169 GAGGGGAATGGAATGGGGGATGCATAAGGATG---CATCAGGCACTAGA---------------------CTACTGGATCCCTT-CCAGAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACT-----CACAGCAGTC-----------------------AGGAGCC--TGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA--------------------AGAAGACACCAG---------------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=13616
s chr3           92763401 459 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTC
s HiC_scaffold_1 95137962 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACT-----CACAGCAGTC-----------------------AGGAGCC--TGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGACT----GCGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGA------------------------------------GCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=13219
s chr3           92763401 458 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTT
s HiC_scaffold_1 95149236 352 + 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACT-----CACAACAGTC-----------------------AGGAGCC--TGGTGCC-----------------------TGTGTCGGTGATG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGA------------------------------------GCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTT

a score=13168
s chr3           92763401 459 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTC
s HiC_scaffold_1 95198794 353 + 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACT-----CACAGCAATC-----------------------AGGAGCC--TGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA--------------------AGAAGACACCAG---------------AGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=8441
s chr3           92763413 434 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95263975 304 + 233722169 ATCTAGGTCAGCTGCA-TCCCCAGAGTTGTGACCACAGCCAGAGCCCCCAC-------------------------------------ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGC------------------------------TGAGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAG------------------------------------GGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=10089
s chr3           92763413 445 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGT
s HiC_scaffold_1 95039914 316 + 233722169 ATCCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG-------------------------------------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------------------------------GGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCAATGGGAATTGT

a score=8498
s chr3           92763416 438 + 160039680 CAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttggga---gggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGA
s HiC_scaffold_1 95235723 303 + 233722169 CAGGTCAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAG-------------------TCCTGCAG-----ACCACTGTCACCAT------CACAGGAGTC----TGATCTCCACAGC--------------CTGCACTAGTGG---------GACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGG-----------------GAAC-------AGAGCAGGaggaagcag---------------------caggcagatatTGTGCTGGGCTCTTCTGGG---GGCACTTGGGGTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAA

a score=7703
s chr3           92763507 355 + 160039680 gccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGA---TGGCGAC-------------GAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTCAG
s HiC_scaffold_1 95124123 273 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGT----TCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAG------------------CAGCCCCCAGAGCTGGAGCC------------------------------------------------ACAGCAGGAAAATACTGG---------AGGAAGGCATGATGCTGGACACTGCAGTGGACATTTTGGGGT---------------GCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAA----GAGAGTTCAG

a score=7727
s chr3           92763571 281 + 160039680 GATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACA--CAGGGgggcacttgggagggcattta---ggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGT
s HiC_scaffold_1 95358364 247 + 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAG-----------GAAG----------------------------AGCCTGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGT

a score=12732
s chr3           92777398 486 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATTC
s HiC_scaffold_1 95137962 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGA------------GCcatggcagcagccagagcccCCACTGGGCTCACACT------------------------CACAGCAGTCA-----------------------GGAGCC--TGGTGCC-----------------------TGTGGCGGTGGTGGAAGAGA---CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12270
s chr3           92777398 486 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATTC
s HiC_scaffold_1 95215602 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGA------------GCcatggcagcagccagagcccCCAGTGGGCTCACACT------------------------CACAGCAGTCA-----------------------GGAGCC--TGTTGCC-----------------------TGTGGCAGTGGTGGAAGA------CACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA-----------GAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=8888
s chr3           92777481 391 + 160039680 cagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggagggcatttaggggggcattttggagggcactttgggg----tctg---gcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95208087 338 + 233722169 CAGTAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA-GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAGCAACCACTACCCCCAGAACTG------------------------------GAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTGTGGATATTTTGGATGTACTTGGGA---CACTTTG-GAAGGCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGG

a score=9535
s chr3           92777481 391 + 160039680 cagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95146557 339 + 233722169 CAGTAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTA-GGCTCACACTG--ACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCCTGTGGTGGCTTGGGCAGCAGCCACCACCCTCAGAACTG------------------------------GAGCCACAGCAGATCTCAGAACTGGAGCCACAGAAG-----------AAAGAGATCTGAGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGT-GGATACTTTAGA----TGCACTTGGGA---CACTTAG-GAAGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=7480
s chr3           92777506 365 + 160039680 tgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95264001 278 + 233722169 TGTGACCACAGCCAGAGCCCCCAC-ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGCTG------------------------AGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAG------------------------------------GGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=9087
s chr3           92777508 375 + 160039680 ccacagcagccactgctgccaccactgctgccacagc---agcc-----actgctg----ccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATT
s HiC_scaffold_1 95039916 312 + 233722169 CCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTGGAGCTG------------------------AGGCCACCGCAGCCCCCAGAGCaaggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------------------------------GGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA---ATGGGAATT

a score=12382
s chr3           92777511 358 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCT--GTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95149259 316 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAACAG--TCAGGAGCCTGGTGCCTGTGTCGGTGATGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=12617
s chr3           92777511 373 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcA-TCCAGAGCT--GTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATTC
s HiC_scaffold_1 95198817 330 + 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT--CACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAA-----------GAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=8206
s chr3           92777514 362 + 160039680 cagccactgctgccaccactgctgccacagc---agcc------actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttggga---gggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGT
s HiC_scaffold_1 95235728 296 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------------------caggcagatatTGTGCTGGGCTCTTCTGGG---GGCACTTGGGGTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=7680
s chr3           92777537 334 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGA---TGG---CGACGGAGGGATCTGCGGGG------TCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95124123 262 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAA------------------------------------CTACAGCAGCCCCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGG---------AGGAAGGCATGATGCTGGACACTGCAGTGGACATTTTGGGGT---GCACTTGGGA------------GGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTA

a score=7978
s chr3           92777600 281 + 160039680 GGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcattta---ggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTA
s HiC_scaffold_1 95358363 253 + 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAGGA---AGAGCC----------------------------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGTAGTTA

a score=10221
s chr3           92788897 577 + 160039680 CCTGAGGAGACTATAGAACATTTCCCAGGAGATTTCAGCACCTCAGTGGGCAGGGCAAGGAGGGAAGCAGGAGGAGAGGACATCACGAAATGGAGA---GTCTTCTGAACGTGTTCTCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95025730 436 + 233722169 CCTGCAGAGAACTCAGAAC-TTTCGCAAGAAA------CATCTCAGTGC-TAAAGCA--GATTGAAGTATATGGAAAAAACTGCAAGGGACAGAGAACAGTCCTTGGACTTTGT----CTCCTTTAAAACTTCTC----ATCACCGCTGCTAAGTTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGC-----------------------CCCCAG-----------------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=12472
s chr3           92789030 456 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT--GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTC
s HiC_scaffold_1 95198794 353 + 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGA------------GCcatggcagcagccagagcccCCAGTGGGCTCACACT------------------------CACAGCAATCA--------------------------GGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12711
s chr3           92789030 456 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTC
s HiC_scaffold_1 95215602 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACACTGG----GCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCA------AGAA-----GACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12932
s chr3           92789030 455 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATT
s HiC_scaffold_1 95149236 352 + 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAACAGTCA-----------------------GGAGCC--TGGTGCC-----------------------TGTGTCGGTGATG--GAAGAGACTGG----GCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTT

a score=13637
s chr3           92789030 456 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTC
s HiC_scaffold_1 95137962 353 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGACT----GCGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=9744
s chr3           92789042 431 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95039914 305 + 233722169 ATCCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----CCGCAGC--CTGCACCT---------------------GTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=8716
s chr3           92789045 435 + 160039680 CAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGA
s HiC_scaffold_1 95235723 303 + 233722169 CAGGTCAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAG----------------------TCCTGCAG-----ACCACTGTCACCAT------CACAGGAGTC----------TGATCTCCACAGCCT-----------------GCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcag---------caggcagatatTGTGCTGGGCTCTTCTGGGGGCACTT-GGGGT-----------AGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAA

a score=7858
s chr3           92789094 379 + 160039680 gctgc--caccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95263985 294 + 233722169 GCTGCATCCCCAGAGTTGTGACCACAGCCAGAGCCCCCAC-ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCC---------------------TCCCTCAGAGCTTCAGCTG------AGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGG-----------AGGAGGTagcaggcaggcacag----------------------tgctgggCTCTTCTGGGGGCACTTGGGGG------------AGGGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=6515
s chr3           92789124 344 + 160039680 gctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACA
s HiC_scaffold_1 95173311 256 + 233722169 GCTACCACCAGAGCACCCAGACTGCCTACCACTGTCACCATC---ACAGGAGTCCAAGCTCCACAGCCTGCATCTGTGGGACCTGCAGCATCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGGGCTGCAACA------------GAGGCCACCACAGCCCCCAGAGctggaagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTGGGGGGACTTGGGGG-------------------------AGGGGACTGGCACTGTTGCTAGTTGTGTTGGTAGGACA

a score=7824
s chr3           92789139 349 + 160039680 gccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGA---TGGCGAT-------------GGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTCAG
s HiC_scaffold_1 95124123 273 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGT----TCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAGCC------------------------------------CCCAGAGCTGGAGCC------------------------ACAGCAGGAAAATACTGG---------AGGAAGGCATGATGCTGGACACTGCAGTGGACATTTTGGGGT---------------GCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAA----GAGAGTTCAG

a score=7719
s chr3           92789213 270 + 160039680 GTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTT---TGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTA
s HiC_scaffold_1 95358374 242 + 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAGGAA---GAGCC----------------------------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTGTAGTTA

a score=3619
s chr3           92789420 51 + 160039680 GACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95460308 51 + 233722169 GGCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTT

a score=12483
s chr3           92806358 519 + 160039680 GAATCTCCACAGTTAGATTTCAGTATTG-TAGTGACCTACGCTTGAAA--CAAAGGAGGAGCAGGACAGAACAGCAGGCAGGGGCAGTCTTCTGAACA-TGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95149127 448 + 233722169 GAATCTCT---GGGAGTCTTCAGGATCCCTACTGACCTATGATTTAAAGCCAGGGAATGGAAAGGGGGATGCATAAGGCTGCATCAGGCTCTAGACTACTGGATCCCTTCCAGA--GCTCTTCCTGGGC----------CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAACAGTCAGGAGCCTGGTGCC-----------------------TGTGTCGGTGATGGAAGAGA------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=12157
s chr3           92806386 491 + 160039680 TAGTGACCTACG-CTTGAAACAAAGGAGGAGCAGGACAGA-ACAGCAGGCAGGGGCAGTCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95198711 422 + 233722169 TACTGACCCATGGTTTAAAGCCAGGAAATGGAAAGGGAGATGCATCAGGCTGCATCAGGCTCTAGAACGCTGGGTCATTTCAAGAGCTCTTCCTGGG-----------CCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAATCAGGAGCCTGGTGTC-----------------------TATGGCGGTGGTGGAAGAGA------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAG-----------AAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=12774
s chr3           92806386 491 + 160039680 TAGTGACCTACGCTTGAAA--CAAAGGAGGAGCAGGACAGAACAGCAGGCAGGGGCAGTCTTCTGAACA-TGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95137879 422 + 233722169 TACTGACCCATGGTTTAAAGCCAGGGTATGGAAAGGGGGATGCATCAGGCTGCATCAGGCTCTAGACTACTGGATCCCTTCCAGA--GCTCTTCC-------TGGTC---CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGCC-----------------------TGTGGCGGTGGTGGAAGAGA---CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------GAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=10182
s chr3           92806418 462 + 160039680 GGACAGAACAGCAGG---CAGGGG-CAGTCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGG---TGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95025792 374 + 233722169 GGAAAAAACTGCAAGGGACAGAGAACAGTCCT-TGGACTTTGTCTCCTTTAAAACTTCTCATCA-------CCGCTGCTAAGTTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------TCCCTCAGAGCTGGA------------------GCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcag---------caggcagacact---------------gtgctgggcTCTTCTTGGGGCATTTGGGGGAAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=9046
s chr3           92806459 421 + 160039680 CCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgcca-----cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95235691 329 + 233722169 CCTCTGAAATCTCTTGTCTCAGCATCAGATTAC--AGGTCAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAG--ACCACTGTCACCAT------CACAGGAGTC----------TGATCTCCACAGCCTGCA---CTA--------------GTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAGTTGG-----------------GAACAGAG----CAGGaggaagcagcaggcagatatTGTGCTGGGCTCTTCTGGGGGCACTTGGGGT-------------AGGGAA-----------ACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=7780
s chr3           92806490 390 + 160039680 ACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATAC---AGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGA------GGAGG--TTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95208102 323 + 233722169 ACCCAGCTCAGCAGCAG-CCTCAGAGccagggcagcagccagagcctCCACTGGGGTCAC-ACT-----CACAGCAGTCAGGAGCCTGGTGC--------------------------TTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAGCAACCACTA------------------CCCCCAGAACTGGAGCGACAGCAGCTCCCAGAGGTGGA------------------------GTCACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGC---ACACTTTG-TGGATATTT-TGGATGTACTTGGGACACTTTGGAAGGCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGG

a score=8477
s chr3           92806490 390 + 160039680 ACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGG----------TGCACTTGGG------AGGAGG--TTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 95146572 324 + 233722169 ACCCAGCTCAGCAGCAGCCCCCAGAGCCATGACAGCAGCCACAGCCTCTACTA-GGCTCACACTG-----ACAGCAGTCAGGAGCCTGGTGC--------------------------TTGCAGTGGTGTTGGAAGAGACTG---GGCCTGTGGTGGCTTGGGCAGCAGCCACCA------------------CCCTCAGAACTGGAGCCACAGCAGATCTCAGAACTGGA------------------------GCCACAGAAGAAAGAGAT---------CTGAGGAGGACATGATGCTGGGCACTGGGGTG---GGCACTTTGGAGCACACTTTGTGGATACTTTAGATGCACTTGGGACACTTAGGAAGGCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=10513
s chr3           92806490 518 + 160039680 ACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTGATGGATGCTCAGGAGCTGTAAAAGAGTTGCACACAAATCAGACCC--AAGTTCCAACATCATGTTGTCTACTCTTGTCCGTTCTGATTCATTTCCCATCCCCTCCTGAGTCTTTTGATCAGACAAGA
s HiC_scaffold_1 95039914 420 + 233722169 ATCCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAG----------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagca---------------------ggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA----ATGGGAATT--GTACCttgaaacaaaatgcaaac-atttgAACCCAGAAACTTCAGCACAGCGT------CTCTT---CGTTTTTGTCAAATGCCCTCCCTCACCCAAGCTGCTTTGTAAGCCAAGA

a score=12094
s chr3           92806493 384 + 160039680 CAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95215617 324 + 233722169 CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGTTGCC-----------------------TGTGGCAGTGGTGGAAGACA------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAG-----------AAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=8552
s chr3           92806494 385 + 160039680 AGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95263979 300 + 233722169 AGGTCAGCTGCA-TCCCCAGAGTTGTGACCACAGCCAGAGCCCCCAC----------ACTGC--------CAACCACTGT------CACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGC------------TGAGGCCACTGCAGCCCACAGATGTGGGG--GCAGAA-------------------CAGGAGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGG------------------------AGGGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCA

a score=8595
s chr3           92806557 322 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGAT------GACGACGGAGAGATCTG------CGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCA
s HiC_scaffold_1 95124123 262 + 233722169 GCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAGCCCCCAGAGCTGGA------------------------------------------------GCCACAGCAGGAAAATACTGGA---------------------GGAAGGCAT---GATGCTGGACACTGCAGTGGACATTTTGGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTA

a score=7024
s chr3           92806631 252 + 160039680 GCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATA--CAGGGGGGCACTTAGGAGAA---------------CATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTG
s HiC_scaffold_1 95358374 236 + 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCT---ACTACAG----CCTCA-----GTAGCTAGAGCAACATCAGGA---------AGAGCCTGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGTAAGGCACTTTGGAGG------------TCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGACCTGTCAGTTG

a score=3960
s chr3           92806827 50 + 160039680 GCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 95460309 50 + 233722169 GCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTT

a score=8916
s chr3           92849981 608 + 160039680 TGAGACTAGTGAGTAAAATTTGAA----------CTTCACTGAAAAAAA-----TTCATCATCTCAA--AATTCAGAACACAGAAAACAAGAAGGGAGGGAGGAA--TAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtca-----ctgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGG---AGGAAGTCTG--TAAACCTAAAGAGAAATATAAAA
s HiC_scaffold_1 95207944 521 + 233722169 TGAGCCTTGAGAGTGTAACATCAAATAAACgattcttcacagaaatatgGTGTCCTCATTATCCTGGTCAATTCATGATTTAGATGA-GAGAGTGTAGTGAGGAAAGCATCAGGAGGTAATGGGCTCTG-GATCAT--CCATTTTCTCAGTAGCT----------CCTCCTGACCCAGCTCAGCAGCAG-CCTCAGA---------GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTG-----------------GTGTTG--------GAAGAGACT----GGGCATGTGGTGGCTCAGGCAGCAACCACTACCCCCAGAACTG------------------------------GAGCGACAGCAGCTCCCAGAGGTGGAGTC------------------------ACAGCAGGAAGAGACCCAAGGAGGGCATGACGCTGGGCACTGGGGTGGGTACTTTGGAGCACACTTTG----TGGATATTTTGGA-TGTACTTGGG---ACACTTTGGAAG-GCCTGGAAATGCTACTGCTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAACGAGAATAatgaaa

a score=9666
s chr3           92850024 565 + 160039680 TCATCTCAAAATTCAGAACACAGAAAACAAGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccac--agcaaccactgctgccacaacagtca-----ctgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACA--ggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGG---AGGAAGTCTG--TAAACCTAAAGAGAAATATAAAA
s HiC_scaffold_1 95146481 455 + 233722169 TCAATTCATGATTTAGATGAGAGAGTGTAATGAGGAAAG------CATCAGGAGGTAATGGGCTCTG-GATCATCAATTTTCTCAGTA--GCT----------CCTCCTGACCCAGCTCAGCAGCAGCCCCCAGA---------GCCATGACAGCAGCCACAGCCTCTACTAGGCTCACACTG-----ACAGCAGTCAGGAGCCTGGTGCTTGCAGTG-----------------GTGTTG--------GAAGAGACT----GGGCCTGTGGTGGCTTGGGCAGCAGCCACCACCCTCAGAACTG------------------------------GAGCCACAGCAGATCTCAGAACTGGAGCCACAGAAG---AAAGAGATCTG--------AGGAGGACATGATGCTGGGCACTGGGGTGGGCACTTTGGAGCACACTTTGTGGATACTTTAG-----------------ATGCACTTGGG---ACACTTAGGAAG-GCCTGGAAGTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCTacctaaactaaactaaaataatgaaa

a score=13335
s chr3           92850034 585 + 160039680 ATTCAGAACACAGAAAACAAGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtca-----ctgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAAACCTAAAGAGAAATATAAAAGCCATCAGCAGAAGTATCATGCAGACATAT
s HiC_scaffold_1 95149165 473 + 233722169 ATTTAAAGC-CAGGGAATGGAAAGGG--GGATGCATA--AGGCTGCATCAGGCTCTAGACTACTGGATCCCTTC------------CAGAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGA---------GCcatggcagcagccagagcccCCACTGGGCTCAC-ACT--CACAACAGTCAGGAGCCTGGTGCC-----------------------TGTGTCGGTGATG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCC------------------------------------------------------CCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT--GTTGTGACTTTTTCAACTTGAAAGTA---ATGAAACTCTTTAGCTGTACAAACCTAAAGACAcat

a score=13285
s chr3           92850057 559 + 160039680 GGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtca-----ctgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAAACCTAAAGAGAAATATAAAAGCCATCAGCAGAAGTATCATGCAGACA
s HiC_scaffold_1 95137909 452 + 233722169 GAAAGGGGGATGCATCAGGCTGCATCAGGCTCTAGACTACTGGATCCCTTC------------CAGAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGA---------GCcatggcagcagccagagcccCCACTGGGCTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCC-----------------------TGTGGCGGTGGTG--GAAGAGA-CTGCG---CCTGTGGTGGCTCAGGCAGCAGCCACCACCC------------------------------------------------------CCAGAGCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT--GTTGTGACTTTTCCAACCTGAAAGTA---ATGAAAGTCTTTAGCTGTACAAACCTAAAGACA

a score=12635
s chr3           92850057 495 + 160039680 GGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT--GTGTCGATGGCGACG----AAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCT
s HiC_scaffold_1 95198741 393 + 233722169 GAAAGGGAGATGCATCAGGCTGCATCAGGCTCTAGAACGCTGGGTCATTTC------------AAGAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGA---------GCcatggcagcagccagagc--ccCCAGTGGGCTC----------ACACTCACAGCAATCA-----------------GGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCC------------------------ACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT

a score=12463
s chr3           92850122 430 + 160039680 GAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtca-----ctgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCT
s HiC_scaffold_1 95215602 340 + 233722169 GAGCTCTTCCTGGTCCAGCTCAGCAGCAGCCCCCAGA---------GCcatggcagcagccagagcccCCAGTGGGCTCAC-ACT--CACAGCAGTCAGGAGCCTGTTGCC-----------------------TGTGGCAGTGGTG--GAAGACACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCGAGTTGGAGCC------------------------ACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT

a score=6614
s chr3           92850126 432 + 160039680 CCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAG
s HiC_scaffold_1 95124091 298 + 233722169 CCTTC-TGGTCTAGCTCAGCAACAGCACTCAGAGCCATGGCAGCAACCAGAGCCCCCACTGGGCTCACATT------------CAGAGCAGTTA--------------------GGAGCCTGGGGCCTGCAGTAGGATTGGAAGAG----GCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAGCCCCCAGAGCTGGA------------------------------------------------------------GCCACAGCAGGAAAATACTGGA---------GGAAGGCATGATGCTGGACACTGCAGTGGACAT---------------------------TTTGGGGTGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATA-TCTTAAGAG

a score=6741
s chr3           92850281 266 + 160039680 GCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcactta---gggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGAC
s HiC_scaffold_1 95358374 226 + 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTGCCATCCCAAGAGTTGTTTCATCCTCAAGAGCTACTACAGCCTCAGTAGCTAGAGCAACATCAGGA---AGAGCC----------------------------TGGAGATAAGCAAGGGGCTGCTCAGGAGAGCAAGCAACTGGGAATCACTTGAGGAAACATTTATGGGT------------AAGGCACTTTGGAGGTCACTTGGAATGGGGCTGCCATTGCTGCTGATACTACTAGCAAGAC

a score=10327
s chr3           92920870 295 + 160039680 CTGTAAAGTCCTGCTA-CTTCTCCAGCAACTGTGCAG--CCTCGCTCAAGTGTTCCTTGACCAAGTATCCCCCAAATAACCCAGCACAGTGTCTGCCTATGGCCTCCTTCTGATATGCTGCAAGCTCTGTGGGCTGTAGTGACCCTAGCTC------TGAAGGTAGCTGCTGCTTAGGCCATCACAGTTGCTACAG-TGCCATGGACATCACCATGAGAGTTGTGACTCCTGTGATAGCATCACTGTCTACATCTGGGGATTCTGCCTGTGGGCACAAATCAGTGGGCTGCTGCTGTCTTGGAGA
s HiC_scaffold_1 95247560 302 + 233722169 CTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCCCTCCCCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcctcctgct---ctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCATCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAGGGTCTGCAGTCTGGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACATAGAGA

a score=5292
s chr3           92920907 255 + 160039680 CTCGCTCAAGTGTTCCTTGACCAAGTATCCCCCAAATAACCCAGCACAGTGTCTGCCTATGGCCTCCTTCTGATATGCTGCAAGCTCTGTGGGCTGTAGTGACCCTAGCTCTGAA---------------------------GGTAGCTGCTGCTTAGGCCATCACAG----------TTGCTACAGTGCCATGGACATCACCATGAGAGTTGTGACTCCTGTGATAGCATCACTGTCTACATC---TGGGGATTCTGCCTGTGGGCACAAATCAGTGGGCTGCTGCTGTCTTGG
s HiC_scaffold_1 95388663 276 + 233722169 CCCACCAAAGTGCCCTC---CAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGGTGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACC------AGGCTCCTGACTGCTGTGA----------GTGTGAGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGCTGCTGAGCTGG

a score=5007
s chr3           92920916 246 + 160039680 GTGTTCCTTGACCAAGTATCCCCCAAATAACCCAGCACAGTGTCTGCCTATGGCCTCCTTCTGATATGCTGCAAGCTCTGTGGGCTGTAGTGACCCTAGCTCTGAA---GGTAGCTGCTGCTTAGGCCATCACA-------GTTGCTACAGTGCCATGGACATCACCATGAGAGTTGTGACTCCTGTGATAGCATCACTGTCTACATCTGGGGATTCTGCCTGTGGGCACAAATCAGTGGGCTGCTGCTGTCTTGG
s HiC_scaffold_1 95344348 240 + 233722169 GTGTTCC-----AAAGTACCCACCCCAGAGCCCAGCATAATGCACTCCTTGGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGTTCTGGGGGTGGTGGCTGTTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACC---AGGCTCCTGACTGCTGTGAGTGTGACCCCAG-------TGGaggctctggctgctgccctggCTCTG-AGGCTGCTGCTGAGCTGG

a score=25297
s chr3           92923862 1994 + 160039680 CCCCAGGTA----TGTGCTGCTGGAACTTAACTGATGAGGCTTAGAT--TATCCACCCTGAAATGCCCATGGTT-CTCTGAGCTCAAGGTTAACTAGCACAGATTCACCAGTGTTTACAATTCTGGGTATGCAGTTTATCTAAATGTGAAACTGGATGTTCTCATAAAGTGCTCGTCCATTCTCTCCCTTTCATCTGTGATGCAACTTAATTCAGACTCTGT-AGAGTTATTCCCAAGA-----------GCATCATGAAGATCATAAAGCC-TATCCTACAGATCCTTCTTCCTACTCAAAAGGAA-TCCCATGTCCATGGTTATTTTCTCAGAGCACTCTGTCCTAGTCAGTTGAAGGATTTGAGATATGGACCAGAGGTAGCATGGACTCACATTCAAACTTCCTCTTGATATGT-TTCTTTCTCTTTAATAAGAAGGTATGTATCCAAGAATATTAATGCAGAGCAGGTGCCCAGT-TGA--CTTTGAGAGTAAATGAAAAAGCAAAGGTATTTGAGATATTTTATTCCATTAAATTCCCATCATTTTACACAGATTTTTGTTCTTAGTCTAGATTCTCCATGCTCAGCCT------CCAAATACATT-CAACTTAAGCTGTGACTATTGGCAAGGTAGGACATCATTCTGAAGTTAGTTTAAGAAC------GATAGGGCATA------------TGTTCTTCTGTAATATTGAGAAACCCAAAC-CATCAAG-----ATGAAGCCACACACACA-GCTGACATGGAAAATGACCACCATAGTTCACAGTAGAAATAAGCCCTGCTCCACTCCAAAGTCAAAGTTGGTGACCCCAAAAGGGATTTCCCTTTGCAAGTCCCACACCATTTTACCTCTTCATTTTGTAAGAGAATTCAA--AGCCTACAATCTGCAGCCACTGAGATACTTTCCATATCCTCTTTT---------------TCTCAGTGTTTTTCAACACACACAATTCTTCATTTGC----TTTCAGAAAAAAAATCCCTCAACTCCAATTTCTTCAGTTTACTCACTTTCCAATTGCTCAGTTCACCCTCTGGGGTCTATTATGTGTGGCTTGGCTTAATCTCCTCCCTATAGACCTTTCTACACATCTGCATCCTTTCT------------TCCATCATACACAGAGACTAGGAGTTTTGGTATCAAATAGCACTAACCCTCAAATACACAAGAAAACTCAG---CCCTTTTCCAAGAGGCTCTTCAAAAACCTCATAACGTTTCTGCCCCCTTTCATGCACAATTCTATCCTGGAAGTTCCCACAGAAGTCCTTTGTAAGAAGAAGAATCTAAGGCGTTATTTCTTCATTCCCAAGCTAAAATAATCTCAAGTTTTGGGTACCTTGGGCCTTCAAAAGCTGAGAAAGGGAaaaaaaacaaaaaacaaaacaaacaaacaaacaaaaacaaacCCAAAACACTGAGCATCCCTATGTGGAA-TACGTCAAGGAACAAGTAATACACTGGTGATATTGAGAAAGAATTTTATTCATCTACATGGTTGGACACAGGTG-----------ATGGAACCATGAGAAGG------------AGAAGCAACC------AGGCTTTTG--GGAAATCCATTA--------GAAGA------------GCTCAAGAACACAGAGCCCAAGACAGATTCTGATATCTGAAGAAAGAACAAGCCAACATGGCACTACTGCTCAGT-ACTCCAAACCCTTTTGTCTCAA-----------ACTCAG-----GATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTG---CGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAG------AGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG--GCAGGAACTGGACCTAGA-AGAGTAGGATAGAAACATTATAGGGAGAAGCTTCTGGTGAGTG
s HiC_scaffold_1 95262343 1997 + 233722169 CCTCAGGTGCTGGTGTGCAGCTACAATTTTACTGATGAGTCAAAGCTGCTATCCACAGTGAA-CACACAAGGTAACTAAGAATTTGAAATGAACCATAACTAACCCATTAGTGCTCATGGTGTAGAGTGTGCA-CCCAGATGAATGTGAGGCTGCATgctctcaaaaatattttgtccattttctcattt----ctcttacaTGTTTTTCCTCTGATTCTCTCACAGTGCTCCTCAAGAAGTACTCAAGTGTTTTAAGAAGA----AGAGCCCTACCTCACTGATCCCAAAGCATGCTCAAATCTAAGTCTAATATCTGTGTCAATGTCTTCAGAGAATT-TGAATTAACAAGTTGACTGATTT----TACTGGC--AAAGCAGATTTGTCTTCTACTGGGA-TTCCTTTTAATAGATGTTATtccaatttattaaaaagttatatGTCCAAGAATATTGTAGCAAAAGATTT-CCCAGTATGGTTCTTttgaagcaaatgaaataaaaaacct--------tGTTTGATTCGGTTgaattcata-aattttatataGGTTTG-GTTATCA--------TTTCCATTCTGAAACTGATTTCTCACATAGATTTCAGTTTTTCCTGCAGCCAGTCTCAT-------CACCTTTCTCAAATTATCTCTAGCACCACCATGGTGTGGTATAATGTCATGGCTTTTTTCTTCTGCATCA-----AAGCTCAGCTGCTTCAAAGCTCTAGGGAACAGCACTGGTGTGTTTCCATGGAGAATGACTGTTTGGGTTTGAAGTAGAGGAAAACATCGCACCATTCTATGGCAGAGGCAGAAGCTCTCAGAGGAGGATG---TTTGGGTAACTAAAATAGTTATGTCTATTAATCTcttgaaaaaattttatagataTGCAACCTATAATTGttgaaatatcttttttcttccattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactctaACTCCTCATTGGCATTTTTTCAAGAGAG-------TCAGTTACAATCTGTTCAGA--ATTAACTGTCTAATT----AAACCATCACCTAGGGTCCATTGTTTTCAGTTCAAATCTATCTTCCTCCTTCAGATCTTTCTTTTCACCTTTAATTCCTCTGCCCTTTGTCAATTCATTCTTCCCATAT--------TTTTGATCCT------CTCTATCCTCCTCA-----ACAGAGACTCAGGATTGTTTTTCCAAGATA-TATTTAACAAGCTAACAGCACTTA-GCCCTTTGTTACCC-----TGGGTCCTCGGAGTCCTC-CAGGGCTCTTCATGATGAAGGGGACACAGAAGCATTAATTTTTCAATCCCAAGGTAGGCCTATTCCTAATCCTGGGTATGCGAGAATTTGAAAAATTGTGAAAAGTGACA---------------------------------------CC----TGCCAAGCAGCTTTGGGTTCAGCTGAGTTAAGGGACAAGAA--------GTAGTGTTgagaaacacttttattttttaacaagttGAGGCAGATGTGTTATCATTACTACAAAAAAATGGGAAAGCTTGAGACTTTGGAAAGCACTGGTGTAGAGGCTTCTGAAGGAAACACATTCCTCCCAATGAAGATTTTAGCTTCTTGCTCCAAGAAAGAGAGCCTAGGA----------TCCCTGGGATAGGATT--GCCAGCTTGAGGCTTTCCCTTGGTCATTGGAGTCTCTTCTTTCCTAACAAATCTCTCAACTTAGCATCAGATCTAGGTCAGCTGCA-TCCCCAGAGTTGTGACCACAGCCAGAGCCCCCACACTGCCAACCACTGTCACTATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCCCTCAGAGCTTCAGCTGAGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGGAGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAG------------GGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCAATGCAGTCAGGGAACCTGGAGAGAGCAAG---GAAAAAGCTCAGAGAGAAACTCACAGCCAGTG

a score=39663
s chr3           92925459 2199 + 160039680 CTCCAAACCCTTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGGAACTGGACCTAGAAGAGTAGGATAGAAACATTATAGGGAGAAGCTTCTGGTGAGTGTCT---ACTGACAGTCTGTCAAACACATGCTTTCCCTGACCTATCTGCTTCCTAAGCCAAGATCTCTATGAAATAAAT---------AGGACCACGAAGGCACATGTCTATCCAAATAAAACATTTTCAAGACTATAAGGTAGATCCACGAGCATCTCTAATAAATGCACTCAGAACAATG--------------------TGACTTATAGGACTCCTAGATCCCTG-ACTGTAAGCCAAACACTCCTTCCTCCCTCGCTATTATCCCCCCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCTAGAAGAGATCAGATATGGCAGGCATGCTGTCCCACA----CAGTCCCAGATGATGAATGGCCCCAGACATGCGCTTACCAGATGGGAAGGTGAT------AGGAGACTTT----CTGAGCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGTGGCAGAGCTAAACACTTCCCAGTTACTGGCTTCCAGTGCTTTCCTGTACACGTGCCTAAAGATCCCTTAATGTGGAACCAGGAAGCACTCATGACTGCAAAATCACTTCCTTTTGTTCTTCCCCAGACA-TTGACCCACCTTTCCCCATTCATTCACAAGCTCTAACCCTGTTTTGACCTCTTAAG-ATTATTAACATGGAGATGTATATAGGA------TGCCCAT------TGCTCAAAAATTGAATACATTGATGGGATCGCAATGTT-TTATCATGGATGTATTATGAAGAGCTCAAGCATAAGGCTCAAGC------TTTTAAAGGG----AAAGCCCCTATTGTACT-----GCAGATCAAAAATTA-------TGGGACAGGACTTTCAGATGTTCTCTGGGGGTGACAGTAGAGAAAAGGCAGTGCCTT-----ATAGGGATACAGTGTATAGAAGACAACAGAAAGATACCTGAGACCAGTTTCAGAGAAGGTACTTAGAGATGGCAAGACTCACAACTTTTATCATTAAGAAGAaagatctcc---ccagtctagtcaccccatcttca-gtctctggcaaccttcattt----------tacaccat-----------gctcctttaagtgca--atttattttaaaatccaatcatgactgttatcatgcgaaaatagatctttttgttgatagcttatttcacttaatgtgacctcttccagattcattcctgttggctc-----aaatacttgtcgttattttccaaagcc---------------tgattatatgtcacatgttctatatgcattcatccacaaatacacattttggcagattatttattatagatctcgcaaaaagtgcaacaataaatat-gagggtgtatatcttttcagtgtatgaatgcccc---tttccttttgggtatatac--agacctagtgacattgatgaccacacagca-gttagttttaaattcttttcagaacctctatactatcttctacaaaggctgggaccctttacactaatatcctcttttttttcttcaaaatttttgcaatacttgttctttcttgt-attttaggaataaccaatctcacaagagtgagggaatgtttcattgtagatttaatttgtacttctctgatgattaaggataataaaccatctttcagacatctgcaagccatttgtatg---ccttttaagaaatatttcctcaggttgattctctgattttaagatcagg-attttttctttgctattgagatctttgaattcttaatatactat-gatatttactctttataagatgtataattcacaaatatttctcaccctaata------gtcttgactctttattgtttctcgggctgtgtataagcattttatttttat
s HiC_scaffold_1 95235692 2215 + 233722169 CTCTGAAATCTCTTGTCTCAGCATCAGATTACAGGTCAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCC------TGCAGACCACTGTCACCATCACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGGaggaagcagcaggcagatatTGTGCTGGGCTCTTCTGGGGGCACTTGGGG--------TAGGGAA----ACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAATTTTACCTTGAAACAAAATGCAGATAT-TTGAACCCAGACTCTTGAGCACAGTGTCTTTCATTG--AGTTTTTCA---ATGCACTTCCCTCATCCAAGCTTCTTTGTAAGCGAAGATCTGTGAAAAGGAATTGCTAACCTAGAGAGGGCACAGGCACTTG-----------ATAAGGTTCTCCAAGATGCAACATGGATCAGTGTGGAGCTCTGGCTAG-ACAGTCAGAACAAGAACGGAAAGGACACCAGGTCCTCCCCTGTATGGTTCCCAGCTCCCTGAATTGCACTAGAGAGGATTCTTCCTCCCTCACCA-TAGCCTCCCCACTGCTGCCTTCCATGAGCCACTTTCTCAA---------------------------ATTCCTTCCCACATTTGCATTCCTACACTCT-----GTCCCCTGCAAGCACTCACCAGATGCAGAGGAGATGCCGCGAAAGAACGTTGTGACTGAAGAAGC--TGGAAGAGAAGCCTGGGCCAGGAACCTTTTTATTTTGTGCAGGAT--GTGATGCATCAC---------TTGATGTTTTGGCAACCAGGGGAGGTGCCAGTGCCTGACACATTCTAGGTGCCTGCTG-CAGTGTGTTCCTGGACAC-TGCCTGAAGGTCTCAGAAGGTGGAACAAGGATGTCCTTGTGACTGTTACAGTATTTCCCTCCACTCTTCCTCAAACAGGCTGCCCACCTTTGTCCATTCATACACAGGCTCTGTGCCCTTTC---CTTCATCAGCAGTAGTAATATGGCGATGTGCATGAAACATTATTTCCCAtgagaactttgcagaaaatgaTATCTTTGATGTGATAACACTACTGCTATCTCAAAAGGGTTTACAAACCCTCAAACTTAAGAGCCCAGTCTCATGTTTTAGGGGGTCATGGATTCCTTAGTTTTCTCTAACAGAGGTGAAGAAATATGATATGTGGGAAAGGAACATGAAAACTCC-------------------ATAAGGTCCTGCCTTTCACCATCAGGAC-CAGTGGAGCAGTGAGCATGGAGAA------GAGAGGAATTTACAA------CTCTAGAGGTGATGAGAGTGACAAGTGTTCTTAAGATGAAGAAGGAGTGGTAGAACACTCTAGT--TCTCATCTTCCTGTCTGTGGGATCTACTATTTCTTCTAACTGTACCTGATAGAAGCAAATGGCTTCTGTGTTTGGAAGATTTATGGAAAAGTGCAA-AAGAATTATGTTTatcaaacattttgttttcttact--tgATTTATTTCAACTAACACACTGTTCTCCAGGCTCACTCATCTTTTCACAATGGAaggatttgtttctgttttt--atgctgagtAGCATTCCTTGTGTTTACATGttacattttccttatctatttATCCATTAATGGATACTAGGTCAGATTAGATACTTTTGATAGTGTTCATAATGATGCAATAAACATGGAGTGCATACATCTAttcaa-----aaatgttatttgttTTCCTTGGGACATATACTAATATCTACT-ACAT--AGGATCATAAAACAtgtcagttttaaatttttagaggAATTTCTCTCCTATTTTTAATAATGACTGCACCGATTTACATT----CCTGCAATTAGTAGATAAGTGTTTTCCCAATATTTGCTTTCCTTTGTGGTTTTGATGACAGGCAATCTAATAGGTAAGAGGTGATATCtctttgatattttaattggcatttctctgaTGATCACTCATGCta----ctttttcctatatttacagGACA-TtgtgtgtcttcttttgagaaatatctattcagttCCTCTGGCTATTTttaagttgtggtatttttttcttacaatcaAGTAGTTCATGATCCTGGTGTACTGTGGATATTAATTCCTAATCAGATATATTATTCAcaattattttctccctttttatacagtgtctt---tctattctgtttcttttactctttat--gttttttattttgat

a score=15873
s chr3           92925469 388 + 160039680 TTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTG---CGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAG-GAACTGGACCTAGAAGAGTAGGATAGAAACATTATAGGG-------------AGAAGCTTCTGGTGAGTGT
s HiC_scaffold_1 95111213 376 + 233722169 TTTTGCTTTATAC-CATGGCCCATATCAGCAACAACTCTCAGCACTGTGGCTTCCACCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAAGAGTCCAAGCTCCACAGCCTGCACCTGTGGGACCTGCAACACCTGTGGTGGCTCAGGCAGTAGCCTCCCTCAGGGCTGGAGCTGAGGCCACCGCAGCCCCCAGGGctgggagcagagcaggaggaggcagcaggcagACACTATGCTGGGCTCTTCTGGGGGCACGTTG-------------------------GGGAGGGGACTGGCACTGCTGCTAGTTATGTTGGCAGGACACGCAGTCAGAGAATTTgac---------taaaataaaaccaacacAAAGTACATGTCCATGCAGAGGCTTCAGGCCAATGT

a score=15236
s chr3           92925470 387 + 160039680 TTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCT------GGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAG-GAACTGGACCTAG--AAGAGTAGGATAGAA-ACAT-TATAGGGAGAAGCTTCTGGTGAGTGT
s HiC_scaffold_1 95173264 375 + 233722169 TTTGCTTTATAC-CATGGTCCATATTAGCAAAAACTCTCAGCACTGTGGCTACCACCAGAGCACCCAGACTGCCTACCACTGTCACCATCACAGGAGTCCAAGCTCCACAGCCTGCATCTGTGGGACCTGCAGCATCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGGGCTGCAACAGAGGCCACCACAGCCCCCAGAGctggaagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTGGGGGGACTTGG-------------------------GGGAGGGGACTGGCACTGTTGCTAGTTGTGTTGGTAGGACACACAGTCAGAGAATTTgactaaaataaaaccaacacAAAATACATGTCCATGCAGAGGCTTCAGGCCACTGT

a score=42030
s chr3           92925484 2143 + 160039680 AGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGGAACTGGACCTAGAAGAGTAGGATAGAAACATTATAG-GGAGAAGCTTCTGGTGAGTGTCTACTGACAGTCTGTCAAACACATGCTTTCCCTGACCT-ATCTGCTTCCTAAGCCAAGATCTCTATGAAATAAATAGGACCACGAAGGCACATGTCTATCCAAATAAAACATTTTCAAGACTATAAGGTAGATCCACGAGCATCTCTAATAAATGCACTCAGAACAA----------------------TGTGACTTATAGGACTCCTAGATCCCT-GACTGTAAGCCAAACACTCCTTCCTCCCTCGCTATTATCCCCCCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCTAGAAGAGATCAGATATGGCAGGCATGCTGTCCCACA----CAGTCCCAGATGATGAATGGCCCCAGACATGCGCTTACCAGATGGGAAGGTGAT-------AGGAGACTTTCTGAGCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGTGGCAGAGCTAAACACTTCCCAGTTACTGGCTTCCAGTGCTTTCCTGTACACGTGCCTAAAGATCCCTTAATGTGGAACCAGGAAGCACTCATGACTGCAAAATCACTTCCTTTTGTTCTTCCCCAGACA-TTGACCCACCTTTCCCCATTCATTCACAAGCTCTAACCCTGTTTTGACCTCTTAAGATTATTAACATGGAGATGTATATAGGATGCCCATTGC--TCAAA--------------AATTGAATACATTGATG----GGATC-------GCAA-TGTTTTATCATGGATGTATTATGAAGAGCTCAAGCATAAGGCTCAAGC------TTTTAAAGGG----AAAGCCCCTATTGTACTGCAGATCAAAAATTATGGGACAGGACTTTCAGATGTTCTCTGGGGGTGACA-GTAGAGAA-----AAGGCAGTGCCT--------TATAGGGATA-------CAGTGTATAGAAGACAACAGAAAGATACCTGAGACCAGTTTCAGAGAAGGTACTTAGAGATGGCAAGACTCACAACTTTTATCATTAAGAAG-----Aaagatctccccagtctagtcaccccatcttcagtctctggcaaccttcatttt-----acaccatgc--------------tcctttaagtgc------aatttattttaaaatc---caatcatgactgttatcatgcgaaaatagatctttttgttgatagcttatttcacttaatgtgacctcttccagattcattcctgttggctcaaatacttgtcgttattttccaaagcc---------------tgattatatgtcacatgttctatatgcattcatccacaaatacacattttggcagattatttattatagatctcgcaaaaagtgcaacaataaatatgagggtgt----atatcttttcagtgtatgaatgcccctttccttttgggtatatacagacctagtgacattgatgaccacacagca-gttagttttaaattcttttcagaacctctatactatcttctacaaaggctgggaccctttacact---------aatatcctcttttttttcttcaaaatttttgcaatacttgttctttcttgt-attttaggaataaccaatctcacaagagtgagggaatgtttcattgtagatttaatttgtacttctctgatgattaaggataataaaccatctttcagacatctgcaagccatttgtatgc-----cttttaagaaatatttcctcaggttgattctctgattttaagatcaggattttttctttgcta---ttgagatctttgaattcttaatatactat-gatatttactctttataagatgtataattcacaaatatttct--caccctaata------gtcttgactctttattgttt
s HiC_scaffold_1 95039911 2212 + 233722169 AAGATCCAAGTCAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------GGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCAATGGGAATTGTACCttga--aacaaaatgcaaacatttgAACCCAGAAACTTCAGCACAGCGTCTCTTCGT-TTTTGTCAA----ATGCCCTCCCTCACCCAAGCTGCTTTGTAAGCCAAGATCTATGAAAAGGAAATGCTAACAT-AGGGCACAGACACTTC--GATAAGGT-CCTCCAAGA-TGCAGCATGGATCAGTGTGGACCTCTGACTAG-ACAGTGAGAACAAGGATGGGAAGGACACCAGGTCCTGTGCCCTGTATAGTTCACAGCTCCCTCAAGTGCACTAGAGAGGATTCTTCCTCCCTCACCA-TAGCCTCCCCACTGCTGCCTTCCATGAGCCCCTTTCTCAA---------------------------ACTCCTTCCCACATTTGCACTCCTAGACTCT-----GTCCCCTGCAAGCACTCACCAGATGTAGAGGAGATGCCAGGAAAGAAGGTGACTGAAGAAGCTGTGAA-GAGAAGCCTGGGCCAGGAACCTTTTTATCTTGTGCAGGAGGTATGATGCATCACTTGATGATGATATGGATTTGGCAACCAGGGGAGGTGCCAGTGCCTGACACATTCTAGGTGCCTGCTG-CAGTGTGTTCCTGGACATGTGCCTGAAGGTCTCAGAAGGTGGAACAAGGATGTCCT-GTGACTGTTACAGTATTTCCCTCCACTCTTCCTCAAACAGGCTGCACACCTTTGTCCATTCATTCACAGACTCTGTGCCCTTTCCTTCATC-AACAATAAGTAGTATGGACATGTGTATGGAATATGCCTTCCCTTCAGAACTTTCCAGATCATAACTGAGAAGAATGATATCTTTGATCTGTTAAGACAACTGCTACCTCAAAAGTGT-TTACAAACACCTCAAACCTAAGATCTCAGTCTCATATCTGAGAGGGTTGTGGAGTCTTTAGTTTTCTCTAGAGAGGTAAATAAGGAATATGA-----------TATGTGGAAAAGGCACATAGAGACTCCTTAAAGTCCTGCCTTGCACCCCTGTGGAAATATCAGGACCAGTGGAACAGTGAGCATGGAGAA------GAGAGGAATTT--------ACAACTCGAGGTGATGAGAGTTACAAATGATATTAAGATGAAGGAGTAGAAGAACTTTCTAGTCC--TCATC----CTCCTGTCTCTAGGATCTATTATTTCTTGTAACACTGTACCTAATAGAAGCAAATGGCTTATGTGTTTGGAAGAGTTATGGGAGAATTGTACAA-CAGGATTATGATTAT-CAAACAT-TTTGTTTCTATACCTGATTTATTTCGATGAACACAATGTCTTCCAGATTCATTCATCTTTTTACAATGGAAAgatgttctctttttatgctgcgTAACATTCTTTGTGTTAACatgttacattttctttgtctattcatCTGTTATTGAATACTAAGGCAGTCTGCATATTTTCCATACTGTTAAAA-TGGTACAATAATCATGGAAGTATATACATACCTcttcaaaatat---tatttgctttctttgggACATATACATATCTA-CCACAT--AGGACCacaaaatatgttcattttagTATTTCAGAGAAACTGTTGTACCATTTTCAATAATGActgtaccaatttacattcctGCAGTcagtatgtgttttattttttccaaatccttCCCAACATTTGCTTTCCTTTGTGGTTTTGATAATAGGCAGTCTAATAGGTAAAAGGTGATAGCTCTTTGACATTTTAACTgccatttctctgatgattattGATGCTA------CTTTTTCATATATACAAGACAT---TATgcatcttcttttgagaaatgtctattcaagttCTCTGCCTATTTTTAAG-ttgggttattttttttcttatagttgaGTAGTTTGAAGGCCCAATGTACTTTggatagtaattttt--taaaatgtctcagGCACAAATACTTTCTGCAGTTTTTTAAGTtgtgtcttcattcttttttgttt

a score=12354
s chr3           92925486 309 + 160039680 GATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGG-----GAC-CTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCT------------ctttggggggcactttggggagcactttggggaA---------GGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG
s HiC_scaffold_1 95215613 330 + 233722169 GGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCT---------CACACTCACAGCAGTCAGGAGCCTGTTGCCTGTGGCAGTGGTGGAAGACACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=12940
s chr3           92925486 309 + 160039680 GATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGG------GACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCT------------ctttggggggcactttggggagcactttggggaA---------GGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG
s HiC_scaffold_1 95137973 330 + 233722169 GGTCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCT---------CACACTCACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGTGGTGGAAGAGACTGCGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=12457
s chr3           92925490 305 + 160039680 CAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGG------GACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGG------------CAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaA---------GGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG
s HiC_scaffold_1 95198809 326 + 233722169 CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCT---------CACACTCACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=13040
s chr3           92925490 305 + 160039680 CAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTG------GGACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTct------------ttggggggcactttggggagcactttggggaA---------GGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG
s HiC_scaffold_1 95149251 326 + 233722169 CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAACAGTCA--------GGAGC-CTGGTGCCTGTGTCGGTGATGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=22762
s chr3           92925494  886 + 160039680 TTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG--GCAGGAACTGGACCT-AGAAGAGTAGGATAGAAACATTATAGGGAGAAGCTTCTGGTGA---GTGTCTACTGACAGTCTGTCAAACACATGCTTTCCCTGA--CCTATCTGCTTCCT----AAGCCAAGA----------------TCTCTATGAAATAAATAGGACCAC----------------------GAAGGCACATGTCTATCCAAATAAAAC--------------ATTTTCA-AGACTATAAGGTAGATCCAC---------GAGCATCTCTAATAAATGCACTCAGAACA---ATGTGACTTATAGGAC----TCCTAGATCCCTGACTGTAAG---CCAAACACTC-------CTTCCTCCCTCGCTAT---TATCCCC------------CCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCTAGAAGAGATCAGATATGGCAGGCA----------------------------------TGCTGTCCCACACAGTCCC-AGATGATGAATGGCCCCAGACATGCGCTTACCAGAT---GGGAAGGTGATAGGAGA-------CTTT--CTGAGCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGTGGCAGAGCTAAACACTTCCCAGTTACTGGCTTCCAGTGCTTTCCT
s HiC_scaffold_1 95025867 1007 + 233722169 TCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTT---------CTT---GGGGCATTTGGGGGAAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCAGGGAACCTGGGGAGAGCAAGGAAAAAGCTCAGT--GGAAAAGCTTTAGGCCAATGGTGTCT-CTGGGATGATCTTATAC-CATCCTTGCCCCCAACTCTAGCTGCTTCCTTAAGTagccaggaaaaaggaaaatttatgtcCCTTTAAATTGAATGGAAATACATTTCCTTCCACTTTACTGTGGAAGAGCAGGTGACTGCTCTAACTGGACTTGGAGTCCTCTGTATTCCCAGAAACAGTGAAGTGAATTCCCAGCATTGGAGAGTAGCTCCTGCAGA-GCTCTCTGGGCCCCTGTGTGTCTCTCAGGAAGGAGCTAGGGGGCGCTGACAGCAAGGACTCAAGCATCCCACAGAGCTTCCCTGCCCCCTGTCCCCATCCCCTGCCTCCTGCTGCCCTCCAGGTTCTGCCCTCTGCTGCCTCC----------------------ATGGCAGACACCTCTGCTTCCCTCTTCCCTCTGTAGTCTGTGCTTATCTTCCCACGCTCTCCTGACAGGGCATCTGTGCCCTGCTGGATGCTTACCGGATTCAGAGGAGGCAGCAAGAGGAAGAAGCCTGTGGCTGAGGAGGCTCTGTCtgaggaggccagggcaggagccCTTTTATCCTGTGTAGGGTCAGTGATGCACAGGCTTAGCATGCTGCTGCTTTCACGCCCAGTGGAAGTGACGGAGCCCAGCAGTCCC--ATCCCAAGTCTCCAACCTCTTCCT

a score=3855
s chr3           92925742 51 + 160039680 GGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCT
s HiC_scaffold_1 95460308 51 + 233722169 GGCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTT

a score=8283
s chr3           92926378 899 + 160039680 CTGTACACGTGCCTAAAGATCCCTTAATGTGGAACCAGGAAGCACTCATGACTGCAAAATCACTTCCTTTTGTTCTTCCCCAGACA-TTGACCCACCTTTCCCCATTCATTCACAAGCTCTAACCCTGTTTTGACCTCTTAAG-ATTATTAACATGGAGATGTATATAGGATGCCCATTGCT-----------CAAAAATTGAATACATTGATGGGATCGCAATGTT-TTATCATGGATGTATTATGAAGAGCTCAAGCATAAG-GCTCAAGCT----TTTAAAGGGA-----AAGCCCCTATTGTACTGCAGATCAAAAATTATGGGACAGGACTTTCAGATGTTCTCTGGGGGTGACAGTAGAGAA------AAGGCAGTGCCTT-----ATAGGGATA----------CAGTGTATAGAAGACAACAGAAAGATACCTGAGACCAGTTTCAGAGAAGGTACTTAGAGATGGCAAGACTCACAACTTTTATCATTAAGAAGAaagatctcc---ccagtctagtcaccccatcttca-gtctctggcaaccttcattt----------tacaccat-----------gctcctttaagtgca--atttattttaaaatc-----caatcatgactgttatcatgcgaaaatagatctttttgttgatagcttatttcacttaatgtgacctcttccagattcattcctgttggctcaa-----atacttgtcgttattttccaaagcc---------------tgattatatgtcacatgttctatatgcattcatccacaaatacacattttggcagattatttattatagatctcgcaaaaagtgcaacaataaatat-gagggtgtatatcttttcagtgtatgaatgcccctt-tccttttgggtatatacagacctagtg------acattgatgaccacacagca-gttagttttaaattcttttcagaacctctatactatcttctacaaaggctg
s HiC_scaffold_1 95169034 956 + 233722169 CTAAACACGTGCCTAAAGGTCTCAGAAGGTGGAACAAGGATGTCCTTGTGACTGTTACAGTATTTCCCTCCACTCTTCCTCAAACAGGCTGCCCACCTTTGCTCATTCATTCACAGGTTCTGTGCCATTTC---CTTCATCAGCAGTAGTAATATGGCGATGTGtatgaaacattttttccttgaGTACCTTGCAGAAAATGATATCTTTGATGTGATAACACTATTGCTATCTCAAAAGGGTTTACAAACCCTCAAACTTAAGAGCCCAGTCTCATGTTTGAGAGGATCATGGATTCCTTAGTTTTCTCTAA---CAGAGGTATGAAGAA--------ATATGTTATGTGGGAAAAGAACATGAAAACTCCATAAGGTCCTGCCCTTCACCCCAGGGGCAATATCAGGACCAGTGGAGCAGTGAGCATGGAGAA------GAGAGGAATTTACAA------CTCTAGAGGTGATGAGAGTCACAAGTGATATTAAGACGAAGAAGGAGTGGTAGAACACTCTA------CCATCTTCCTGTCTGTAGGATCTACTATTTCTTCTAACTGTACCTGATAGAAGCAAATGGCTTCTGTGTTTGGAAGATTTACGGAAAAGTTGTGCAAAAGAATTACGTTTatcaaac--attttgttttcttacttgat---ttatttcaattaacacACTGTTCTCCAGGCTTATTCATCTTTTTACAATAGatagatttgtttctgttttt--atgctgagtAGCATTCCTTGTGTTTACATGttacattttccttatctatttATCCATTGATGGATACTAAGTCAGATTAGATACTTTTGATACTGTTCATAAGGGTGTAATAAACATGGAGTGCATACATCTAttcaa-----aaatgttatttgttTTCCTTGGTATATATA---CTAATATCTACCACAT--AGGATCATAAAGCAtgtcagttttaaatttttagagaaatttcTCTCCTATTTTTAATAATGACTG

a score=17945
s chr3           92928582 1217 + 160039680 aaatattccttcatccatgttgacatctcCTTCCTCTGGTAAATTGCCTTTGTGTCTTTGTTTGAA---------CTGTATTCT--AGGTCTAACATTGGATCCTAAGCAGCATATATCTACCTCTGTTCTGCTttccatcttaggaataaaggtccattctctcactactaggcatgatggtagtcataaggctttg-ttgactccctttttcaaattgaagatgctctttttttgctatttatttgctgaaatatttt--------attatcggttactaatgg-tattgttaaattacttctccatttctatagaaatga----tcccatgttttAGTGGCTCTTTGATATGAGATC----CAGTCT-TGCTACTTCACACATTTCTCTAGAACTAAAGCCCTGTCTGAATTTTTAGAAACT---------ATGTATTTTTAGAAATTATGAATATCTTTTATAATGTAT--TTGTAGCATAAT-------------------ATGGAAGATAAGATCATAGTAACTGTATTTGACTAAGTCAAAGAAGCTAAGAATGACCAACAATTTAAGGAGTCACAAATAGACTCCATATGATTGCTTGGAATCAACAAAGACATGTGTCACATAGTCATAGAAGCCAGATGGACGGCTTTGGTGACACA--GCCCACTAGGCTCAGCCTCTCCTGCCCCTGTTCATGCCTTCAATGCCCAATTTGCTCAAAGGAATTAAGGAGT-TTCTCA--TTGATGAGTCATCCAGAAACCTTGAGTTGACCAACCATTAAC--ATACTGCTCTTCAGTTGCTCCC--TCATGACTCAAGATTAAGTGTGTTTAAACCAAAGTCAGTCTTTGTACTTGGTTCTATAGAACAAAAA--AGTCAAAAGCTATTCAACTATCCAG--AGACCTGAATTCCCAGTGAGGTTAAAACATCTT-CTTAAGTACCTCAAGAACCTATAATTTCTCTTTTATGTGCACCACAGTTACAGTTTATCACTTGGTATATTTCCCTTTGAATA-ATTATAA--TACACCAgtgagaacaatctgggtct---tattacagttatgtcataagtgctaagcac----------acggttgacac--ataatT------------------GAGGACGGGAGTTAATGACCAAGTGAGAAGAAATTCAAAGGAAAAATCCAATGATGGTCATTCAGAAGGAGT-GGATCCGGTTTGTGTGAAGACACATAGAAGATG-------------TGCTATACTCCAG--------TGCA-------------------CTGTTAACATCACCTCTACTAGGCTGACCTCTACTCCCTATATAATTACCTAAACca
s HiC_scaffold_1 95104575 1321 + 233722169 AAGTGGTCAGTCATCTGTTATGAC-TGTTCTTTCTACAGTAAATGGCCTT-ATATCTCTGGTTAAagtaaattaattatatttttcagatCCATT-TTGTTCCCTGAATTTCATAG--------CTGTCTTTCCTCACAGCTT-----CAGATATTCATT-TCTCATTATGAAGCATGATGTTAGTTATAAggtttttcttgatgctgtttATCACACTGAGGACGTTCCCTCCAT--TTCTCATTGGCAgagagttttttccttttaatcatgATTTTCCATCAGATTTTATCAAATGCCTCTTTTGCTTCCACTGAGATGACtgttttcagtttcctgtg--tGTCTGATGCGAGTACAGCACTGTCTCTACTATTCCATGTGTCTCTTTAAAATTTCGGTC-TGTCAGAAGTTTTCTACATTTACCAAAAGGCACATTTTTACAAATTATGATGATCTTTTGTAATATATGGTCTCAATATGAGCTGATTTCTCAGTCTCTGAGTGAATGATGAGGTCCCAGTAACTCCATTTGTACAAATCACAGTAGCTGAATAGGACGAACAATTCAG------------AGTCCCCACAGAATGTCTTGGGATCTCCAAAGTGATGTGCAGCATGGTTACAGAATCCAGTTGGACAGCTCTCATGACACATGGTTCACCCTGTCCTGCCTCTCTTGATCCAGCTCACAATCTCACTCTCCTCTTTTTTCAGAGGAGCTTAGAAGTCTTCTCACCTCTATGAGTCACTCAGAAACTGTGGACT--CCACCTATTCATTGACAATGCCCTTCCATGACTCTTAGCAGGGACTCAGGATTAtgctcatttaaaacaaaaagttattttgaaTTGGTTTGTATTGAAAAGAAGGCAGTTAAAAGCTATTAATGTCTACAGAAAGATCTGGGTACCCTATGAGATTAAGCCTTGTTACACATGTCCTCCCACACGCT---GTTTCTCTCTTAGGTG--CCACAGTCATCTTCT-TCATTTGCTGCACATGTGGTTGGCCAGATTGTCAGGTGTCCCTATAAGGGAAATATGCCTTTCTGTTTCACAGCCATATTCTCAGTAGTGAGCACAGTGTGGCCTACAGCTGATGCTGAGAATTTGTTGAAGGTAGAGATTGGGGGAGGTTAGTTAGTGACTGAGGGAG-AGGAATTGAGAAAAAACAGCTCATGA-GGCCACCAGGAAGGAGGAGGATCAGATCTGTGGGAGAAAAGAGAGCAGGTGGTGTGCCCATGTTGGTCACACTCAAAGATCAGGTTACAGGTTCCTGAGGATCACCAGCTGTTAGTAGCATTTCCATTGGGCTGAGCTCTTCT---TGTGTGGTCATTCACACCA

a score=30082
s chr3           92931971 2031 + 160039680 ATAAGTTTTAATAGCCATAAATAATGAGACATCTTTACTATGATGATTTTTATTCACAATATAATTAATTA--TAAGATATAAGTAACTG----TGTATATCACCCATCACCTGC--------TTTTTATGGGCTAATTCTAAGCCATAAATATTTCTTTCTGTAAGAAAACACACATATATGATGTGA---TATTTTAACAATCAAAATATTTAAATTGTATGTGAATTACTAAAGTTGGTAACTATAGCCCAAAATACATTTTACTCAAGTATAATATCACATCATG----TAAGATT------------------TCAGCTTACATGAATTTACAAATATCAAGCAGAGGCATCTTCATATGTGTAATGCAATTATTATTCTATTTAAATTTGATAACCTGCACCTGTTTTTCTGTG-----TTCAGAAAGTCCAT--TTCATTGTTAGAAGCCATGAGGTTACTCAAGGATTGTCACCATACAAGGCCTAACACTCCCCCATCACT--TCCAGGTGCCCCACTGATAGA-GCTCAGGGGACAGCAGCAAATTACAACTGAAGGTCATGTTCCTTGGGCAGCATGA--AATTTGTGGAAA-------ACAATATTTTATGATTTAAGCTTTGGATTTtgtgggtttgtgtgtgtgtgtgtgtgtgtgtgtgt--------------gtgtgtgtgtAGAATTCATTAACAATCATGCCAAAGAAAATAAGATAGAATTATTTTCCAAGGCATGCTACATAAAAGAGGAAAAAAGAAAAGGAGGTAGAagggagagagggagggaggaagggagggagggagggagggagagagggagggagggagggagggagAAGGAAGGAAGAGCAGTTTCCTGGAGACTC-ATTGGGATGTATATGAACAATCCTTGTTCCTGGTTCCTGGTTCAATCT--TCAGTTGGACTTTATGGATATACCAGAAAAAA------ATCCCA---CTGGGCATGTGTCTAGGTAACACCTCCTCTGGTTGTGAAAGCAGAAGTATACCCA-----TGTGACATCAGCAACTGCACAGGATAAAAGCACTCCTGCCCTTGGCTCCTCTGCCAAAGCAT-------CCTCAGACACGGACTTCTGTCTCCTT-------------TGAATCTAGTGAGTATCCAGCGGGG--TGGGCCTTGGAAGAAGTTGGAAG--GGAGCATTAAGATCACAGTAGTAGAGAGAAAAAATTTCTTCCACAGAAATCCAGACATAAGTGCAATAGGGGAGAAAAAAAAACAATTTCTAG--CATTCAATTTAAAAACAATGAGTTTAT-AGTAGGTCAGTATTTAAACAGGCAGAATGAAGGTGGTTGACAAGAATTCTACAATCTACAAAAGTCACAGGCTCTGCGTCCACATCCTACACCTCATGCCCTTCCCGTTCAGGAATTCACATGTACCCTATGACACCGAATCTCCAGATTGGTTTTTTTCCCCCAAACATATGCACCTGCCTGGTATTCTTCAAAGATACAAAAAAACAGATTACCAGACAGACTCAGCCTGTACTTCTAGTGCATGGGTAGCCAATAGAAGGGGAGGTACCTGGTACTATGAAGTGAATTCTATTCATATCAGCTTTCCCCAGTTCTTGAAGCAGTAGA--AAGAACATACCAGAGATGAGGATACTACT--CTGTAGATTACTAAC--ACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGAT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCAACATCCCAGGGGTCAAGAAAAGCCC---AGCTAGTCTTGTTTTGTC--TGATCCTGGACACCCTTCTCTG
s HiC_scaffold_1 95245987 1963 + 233722169 ATAGGTATTAATGGTCAAaaagaagtata------------------ttttatt-------taattaattacatAAAATGTAACTAATTGACTATGTATACTGCTCAGCAGCTACATAATTGTCTCTTGCCAATTAAGACAAAGGCACTAATATTTTTCTCTGCTGCAAAGTTTAAGTTCACCATATAACACTACTTTAATaccaaaataatttctattatgTGTCAATTATTaaagtt--taattatagttctagttatatttttct----tttaatgttgtaTGATGCTACTATAATTCAAATAGGAAGACAGAAGTCAGGGTATAGTAATTGTCTAAAATCAAACAGAGGACAATTTTTATACGGAATACT-TCATTAATTTGCCCA----TTATAATGTAC-CTTGTTCTGCCCTGAGAACCTTAGAAACTCCATGCTGCCTTCTTGGGGCCTTAAAAACATCCCTGGGGCTTGTAATAGACAGGGCCCT-TGTGTCCCCATTGGTAGCTCAGGGGTCTCATCACCGGAAGCTAACAAGGTGGCAAAGAATCACAGCTGAATGCCATAGTGGTAGGGTAGCCTGGGGACTTTGTGCAGAGTCTGGCACAAATGTTTGTCACTTAGGCTTTG---tttagtgatttatttctttttctgtttgtgtgcCTGTCCTTTCAAGCCATGGTCTCAGGACATACATCAGTCATGACCATGGCCA--------------------TTTCCAAG-CAAGTT-CATGGCCGAGGCTGAGACCCAAGA---CAAAAGgacaaaaaggaggaa---aggaaggaagagaaggaggaagagaggcaaGGGAAG-------------------------GCTCCCAGTACACCCCAGTGAGAGACACATGGGTGAT----ATTTCTGCTTCCTGGTGGAATCTCATTACAGGAACattatgaaaataccatcaaaagGCTGAGAACCTAGTTCTGGGCACGTGCCCAGGTGTCACCACTCCTGGTTGTGAAAGCAGCAGCAAACTCAGCCTGTGCATCACCAGCGA-TGCGTAGGGTAAAGGC--TCCTTCGTGGGACTCCTCACCCACAGCCCACAGGCACCTCAGGCACAACCTTCT--CTCCTTCTGTTGCCTCAGGTGCAGCCACTGAGTATCCAGGAGGGAGTGGGACTCAGTTTCAGGTGGTGGTGGGAATATTACAGTCACAGCAGAGGAGAGGGAAA--------TGAAGAGATCTGGAACAGAGACCAGAGGGAGAGGGCAAGGAGGGATTGATAGGGCAAGTAATCCTGGAGC--TGAGGTCAGGAGGGAGCCTGTG-------GGACAG-------------GACAAGCACTTTGTGACCTTCAAAGGCTACAGGAATT-CAGAAATGTCCTGCATC-----CTCTTTCTCTTGAAGCTGCCCCATATTTCCCAAGGACCC--------------------TTTTCCCAAATAGTTGCATTCTCTAGGTGTT-TGGGGAAATATGAAAACTTGGGTGTCTAGTTTAACTGACACTG-ATTTAT----CCTGGGTGTAGAGCAACATGGGCGACACCTGGCATGACTAAGC-CCTTCTGCCCACGTGATGTTCCTCACAGTCATGCAGCTGTGTCCTAGGAACTTA---GACGTGAGGC--CCACTGGCTGTAAGTTTCTCTCTGAGCTTTTTCCTTGCTCTCTCCAGGTTCCCACACTGC-ACTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcc---tcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCATCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAG-GGTCTGCAGTCT-GGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACATAGAGAGATTTCTGAAGAAAGCAGAGTCT---------------CCAATGACCAAGAGAAAGCCTCAAGCTGGCACTCCTTTCCCAGGGATCCTTGGCTGTCTTTCTTG

a score=33272
s chr3           92932032 1902 + 160039680 TAATTAATTATAAGATATAA----GTAACTGTGTATATCACCCATCACCTGC--------TTTTTATGGGCTAATTCTAAGCCATAAATATTTCTTTCTGTAAGAAAACACACATATATGATGTGATATTTTAACAATCAAAATATTTAAATTGTATGTGAATTACTAAAGTTGGTAACTATAGCCCAAA----ATACATTTTACTCAAGTATAATATCACATCATGT---------------------AAGATTTCAGCTTACATGAATTTACAAATATCAAGCAGAGG-CATCTTCATATGTGTAATGCAATTATTATTCTATTTAAATTTGATAACCTGCACCTGTTTTTCT-----GTGTTCAGAAAGTCCAT--TTCATTGTTAGAAGCCATGAGGTTACTCA-AGGATTGTCACCATACAAGGCCTAACACTCCCCCATCACT--TCCAGGTGCCCCACTGATAG-AGCTCAGGGGACAGCAGCAAATTACAACTGAAGGTCATGTTCCTTGGGCAGCATGA--AATTTGTGGAA-----AACAATATTTTATGATTTAAGCTTTGGATTTtgtgggtttgtgtgtgtgtgtgtgtgtgtgtgtgt----------gtgtgtgtgtAGAATTCATTAACAATCATGCCAAAGAAAATAAGATAGAATTATTTTCCAAGGCATGCTACATAAAAGAGGAAAAAAGAAAAGGAGGTAGAagggagagagggagggaggaagggagggagggagggagggagagagggagggagggagggagggagAAGGAAGGAAGAGCAGTTTCCTGGAGACTCATTGGGATGTATATGAACAATCCTTGTTCCTGGTTCCTGGTTCAATCTT--CAGTTGGACTTTATGGATATACCAGAAAAAA------ATCCCA---CTGGGCATGTGTCTAGGTAACACCTCCTCTGGTTGTGAAAGCAGAAGTATACCCA-----TGTGACATCAGCAACTGCACAGGATAAAAGCACTCCTGCCCTTGGCTCCTCTGCCAAAGCAT-------CCTCAGACACGGACTTCTGTCTCCTT-------------TGAATCTAGTGAGTATCCAGCGGGG--TGGGCCTTGGAAGAAGTTGG--AAGGGAGCATTAAGATCACAGTAGTAGAGAGAAAAA-----ATTTCTTCCACAGAAATCCAGACATA-AGTGCAATAGGGGA--GAAAAAAAAACAATTTCTAGCATTCAATTTAAAAACAATGAGTTTATAGTAGGTCAGTATTTAAACAGGCAGAATGAAGGTGGTTGACAAGAATTCTACAATCTACAAAAGTCACAGGCTCTGCGTCCACATCCTACACCTCATGCCCTTCCCGTTCAGGAATTCACATGTACCCTATGACACCGAATCTCCAGATTGGTTTTTTTCCCCCAAACATATGCACCTGCCTGGTATTCTTCAAAGATACAAAAAAACAGATTACCAGACAGACTCAGCCTGTACTTCTAGTGCATGGGTAGCCAATAGAAGGGGAGGTACCTGGTACTATGAAGTGAATTCTATTCATATCAGCTTTCCCCAGTTCTTGAAGCA--GTAGAAAGAACATACCAGAGATGAGGATACTACT--CTGTAGATTACTAAC--ACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGG--GCTGCAGTCTC---CCCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAA
s HiC_scaffold_1 95106701 1854 + 233722169 taattacataaaaaatttaacaagTTGATTGTGTATATCACTTAGCAGcgacataattaatttttccaagtTAA--CAAAGGCATTCATATTTTTCTCTGCTGAAAACTATAAAGAC----CACTGTAGTTTAAcaa-caaataatttatattatgtATGAATTATTAAACTT--TAATTATAGCTCtaatattatacttttta---------aatgttgCGTGATGCTATAGAATTCTAATAGTAAAACAGGTTTCAGGTTGTAGTAGTTGACTAAAATCAAATAGAGGACATTTCCA-----GTCCTGTAAATTTCAT-CTATTTGTTCATAATAATGTA-ACTTGTTCTGCCTGGAGAAGCTTAGAAACTCCATGCTGCCTTCTTGGT-GCCTTGAAGTCGTTCCTGGGGCTTGCAGTAGACATGGCCCT-TGTGTTCCCATCAGTAGCTCAGGGGTCTCATCGCTGGGAGCTAACAGGGTGGCAGAGGATCACAGCTGAAGGCCATAG-CGATGAGTAGCCTGGGGACTTTGTGCAGTCTGGCACAAATGTTTATCACTTAGGCTTTG---tttagtgatttatttctttttctgtgtgccTGTCCTTTTAAGCCATGGTCTCAGGACATACATCAGTCACGACCATGGCC--------------------TTTTCCAAGCAAGAC--CATGGCAGAGGCTGAGACCCAAG-----ACAAAGGgacaaaagaggaggaaaggaaggaagagaaggacgAAGAGAGGCAAGG-----------------GAAGG---------CTCCAGTAGACCCAGTGAGAGACACATGGGTGAT----ATTTCTGCTTCCTGGTAGAATCTCACTACAAGGACATTATGCAAATACCGTGAAAAGGCTGAGAACTTAGTTCTGGGCACGTGCCCAGGTGTCACCACCCCTGCCTGTGAAAGCAGCTGCAAACTCAGCCTGTGCATCACCAGCAG-TGCGCAAGATAAAATATCTCCTTTGTGGGACTCCTCACCCACAGCCCACAGGCACCTCAGGCTCaaccttct--ctccttctcttgccTCAGGTGCAGCCAGTGAGTATCCAGGAGGGAGTGGGACTCAGTTTCAGGTGGTGGCGGGAATATTACAGTCACAGCAGAGGAGAGGGAAATGAAGAGATCTGGAACAGAGACCCAGAGGGAGAGGGCAAGGAGGGATTGATAGGGCGAGTAATCCTGGAGCTGAGCTCAGGA-----GGGAGCCCTGTGGGACAG----------------------------GACAAGCACTTTGTGACCTTCAGAGGGTACAGGAATT-CAGAAATGTCCCGCATC-----CTCTTTCTCTTAAAGCTGCCCCATATTTCC---------------CCAGAACACTTTT-----CCCAAACAGTCGCATTCTCTAGGTGCT-TGGGGAAATATGAAAACTTGGGTGTCTAGTTCAACTGACACTG-ATTTAT----CCTGGGTGTAGAGCAACATGGGGGACACCTGGCATGACTAAGC-CCTGCCGCCCACATCATCTTCCTCACACTCATGCAGCTCTGTCCTAGGAACTTA---GAGGTGAGGC--CTACTGGCTGTAAGTTTCTCTCTGAGATTTTTCCTTGCTCTCTCCAGGTTCCCTGACCGC-ACTGAGATGTCCTGCCAGAAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGTCCCTC------------CCCCAAATGGCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGTAGTCTGGGTGCTCTGGCTGTGGCCACAGCTCTGGGGGATGCTGCTGATCTAGATC-TGATGTTCAGATGAGAGATTTCTGAGCAA

a score=24267
s chr3           92932869 1092 + 160039680 CACTGGGCATGTGTCTAGGTAACACCTCCTCTGGTTGTGAAAGCAGAAGTATACC---CATGTGACATCAGCAAC--TGCACAGGATAAAAGCACTCCTGCCCTTGGCTCCTCTGCCAAAGCATCCTCAGACACGGACTTCT----------GTCTCCTTTGAATCTAGTGAGTATCCAGCGGGGTG----GGCC---TTGGAAGAAGTTGGAAGGGAGCATTAAGATCACAGTAGTAGAGAGAAAAAATTTCTTCCACAGAAAT-CCAGACATAAGTGCAATAGGGGAGAAAAAAAAACAATTTCTAGCATTCAATTTAAAAACAATGAGTTTATAGTAGGTCAGTATTTAAACAGGCAGA--ATGAAGGTGGTTGACAAGAA--TTCTACAATCTACAAAAGTCACAGGCTCTGCGTCCACATCCTACACCTCATGCCCTTCCCGTTCAGGAATTCACATGTACCCTATGACACCGAATCTCCAGATTGGTTTTTTTCCCCCA-AACATATGCACCTGCCTGGTATTCTTCAAAGATACAAAAAAACAGATTACCAGACAGACTCAG---CCTGTACTTCTAGTGCATGGGTAGCCAATAGAAGGGGAGGTACCTGGT-ACTATGAAGTGAATTCTATTCATATCAGCTTTCCCCAGTTCTTGAAGCAG-TAGA--------------------AAGAACATACCAGAGATG-----AGGATACTACTCTGTAGATTACTAACACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCA-ACATCCCAGGGGTCAA-GAAAAGCC
s HiC_scaffold_1 95074149 1040 + 233722169 CGCTGGCCATGC-CCTGGCTGTTACCTCACCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTG-CATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCGTCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGTGGGAAGATAAGCACAGACTGCAGAGGGGAAGAGGGAAG----------CAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAA----------CCTGG------------------------------AGGGCAGTA-----GGAGGCAGGGGATGGGGACAGGGGGCAGGGAAGCTCTGTGGGATGCTTGAGTC-----CTTGCTGTCAGCGCCCCCTAGCTC-----CTTCCTG---AGAGACACACAGGGGCCCAGAGA-----GCTCTGCAGG--AGCTACTCTCTAATGCAAGGGATTCACTTCACTG----TTTCTGTGAATACAGAGGACTCCAAGTCCAGTTAGAA-CAGTCACCTGCTCTTCCAAAGTAAAG--------TGGAAGGAAATGTTTCCATTCAGTTTAAAGGgatatacattt---tcctttttcctcag-----gaAGCAGCTAGAGTTGGGGGCAAGGATTTTATAAAATGATCCCAGAGATACCATTGGCCTAAAACTTTTTCAATGAGC------TTTTTCCTTGCTCTCTCCAGGTTCCCCGACTGC-ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCCTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGTGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGCCTGCTGCTGACCTGGATCTTGATGATGCGC----ACATTTCAGAGAAAACAGGAATTCTAGGAGCCAATGAGAAGCC

a score=29901
s chr3           92932891 3034 + 160039680 CACCTCCTCTGGTTGTGAAAGCAGAAGTATACC---CATGTGACATCAGCAAC--TGCACAGGATAAAAGCACTCCTGCCCTTGGCTCCTCTGCCAAAGCATCCTCAGACACGGACTTCT----------GTCTCCTTTGAATCTAGTGAGTATCCAGCGGGGTG----GGCC---TTGGAAGAAGTTGGAAGGGAGCATTAAGATCACAGTAGTAGAGAGAAAAAATTTCTTCCACAGAAAT-CCAGACATAAGTGCAATAGGGGAGAAAAAAAAACAATTTCTAGCATTCAATTTAAAAACAATGAGTTTATAGTAGGTCAGTATTTAAACAGGCAGA--ATGAAGGTGGTTGACAAGAA--TTCTACAATCTACAAAAGTCACAGGCTCTGCGTCCACATCCTACACCTCATGCCCTTCCCGTTCAGGAATTCACATGTACCCTATGACACCGAATCTCCAGATTGGTTTTTTTCCCCCAAACATATGCACCTGCCTGGTATTCTTCAAAGATACAAAAAAACAGATTACCAGACAGACTCAG---CCTGTACTTCTAGTGCATGGGTAGCCAATAGAAGGGGAGGTA---CCTGGTACTATGAAGTGAATTCTATTCATATCAGCTTTCCCCAGTTCTT---GAAGCAG-TAGA--------------------AAGAACATACCAGAGA-----TGAGGATACTACTCTGTAGATTACTAACACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCAA-CATCCCAGGGGTCAAGAAAA--------------------GCCCAGCTAGTCTTGTTTTGTCTGATCCTGG-----------------ACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGT----------------TCCCACCCTTCCTGTG-GAATGCATGTGCCCATCCTTGGTTCTGACTAGAATAAAGATTCTATCCCCACCACACTGGTGTGTCACTGTCATTGTTCC--CTGTCCCTCCACAGGTGGCAGGTATGCGCTCCTCCCCTCTAACTCTCAATTCCAGCACT-CCATAATCCAGAGGGGCCGGGGTGGGAGGAAACCATAGCTCTACACAGG--AAAAGTTTAGAATTCTGTCAGACATGTTAATATTCACTTGGGTTGAAGCAGCAGG----GGAAATGGAATGAACAGATTCAGAAAGACAATATCTGCATCTCTCAAATGTGAAGATACTTTTAATGTTTGTTTGTATGTTTTTTAAAGAAAGGGGTATGGCAGGTTT----------------AGACTATTAAATTAGATTGAGATCATGAAATAAGAACAAGACTTGGTAGGATAGGGGGGAAACAAAAGGAGAAATAACATGAAAGTGGATAGGAAAGTAGGGAGATGAGGGGGAGGAGAAGAGCAGGTATCAGGGAGAGGAAGAAAGAGAACAATATTTTGTTGATTTTTACATAATTA--AACTTAAACCT-------TTGTATGCtaata---taaattattaatgaaaat--aattttGTGCTTATgatgttgttcacattttgtgggtagaagccagggatatctctaagcatcctgcaagtcacaggctagactct-acagcaagg-actctccattccaagacaccagtaacacaaagactgaaaaCTTACAAATCAGGAAAG---AAGTAAAGAATG-------AAGGTATAGGAAGTACAG---ACACAAAAAACTGTACCAGAGAGGTCAGGTGAGGATATTAAGTTAAAACAGAGTAAGTCAAGAGAACTCACAGAGCTGATGATTTAGAAAGTGAGACAGTAACAGGTGTGAATAGCAAGCAGTTAGAAAAAGGGAGGAGAGGAACAGAGAAATG-------CTGGTCAGATTACGGATTTATTTAACTGTCTGATCAATAGTTCCCTAGAGCTTCTTATGTGAGGAACTCCTCAGAGACAGACACTCAGCTCTATAAGTAACCTGTAAGGTCATTTCTCTGA---------------------AAGGCCAC-ACATCTGACAGTGGATAAACTGCTTTGACCCAGGACCCAGAATGCACAGCTTATAAATCCCTGCTCTTGGCCACTTGGCACTTGACTCTTCCTTGAGATTTTTTCAGGAGCTCTGCAGAAATAATGA----TCTTTTATTTA-GCCTCTATCAAATTAATTTTTCTTATCTTTAAAATTTTATATTGAT---------------AACTAATATCCTAATATATGACTCAAGCTCCCCATTTAATAA-----------TCTGGCTTTCACATTTGAAACCTAGAATGT----------TGGTTCCT---------TCACTT------------GTCCCA-TCCACCTGCCAGACTCCAAAAATTATTACTGTGAAAGAGCAGTCC--------------------------------------------------------------------------ACCAAACCCAGGAAAA---------------------------------------TATAGAGGTTT-----TTCTAATTTAAAAACCAAGG-------CTGGAAAATAT----CTGATTATTTCCATTCTAAGATCCAAGGACTCAGGGATTTTTAAAAAATCTTT-TAATGTAATGAAAAAAATAATTCCTCAAGAATGGCATGAGAT--ACCCTGCCCAGGTACTTTTGGGACCCACTCTCTAGAACAAGCCAACTCCCTAAAGTGGGACCCTCAGCTGCCATGATTAAATCTATGACAACAAGATTCTCATGACTCACTACTGGAAAAACTGTTAGGTTTCCCTTCATCTTGTGCCAGAATGCTGTCACATCATTGATAAAATATGACCACAAGCAGTTAA---GAATAAGTTGAGCTGGG-----AGCGGCAACAATGTATATATTGCCTTGCTGT-GTAGACCAAGAACCAAGAACCCA--------GAACAAGTGAACACCCAGAACC----ACCAGAAAGTGGAAACTGAAAACCACTGTATGGATTAATGGCTCTGACTCATGTTCCATGATTCTGGTTAAGAATCAGAAGGAAA
s HiC_scaffold_1 95088019 3187 + 233722169 CACTTCCGCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTG-CATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCTGGTAAGCATCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGTGGGAAGATAAGCACAGACTGCAGAGGGGAAGAGGGAAG----------CAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAA----------CCTGG------------------------------AGGGCAGCA-----GGAGGCAGGGCATGGGGACAGGGGGCAGGGAAGCTCTGTGGGATGCTTGAGTC-----CTTGCTGTCAGCGCCCCCTAGCTC-----CTTCCTG---AGAGACACACAGGGGCCCAGAGA-----GCTCTGCAGG--AGCTACT---CTCCAAAGCTGGGAATTCACTtcactatttctgtgaatacagaGGACTCCAAGTCCAGTTAGA-GCAGTCACCTGCTCTTCCACAGTAAAG--------TGGAAGGAAATGTATTTCCATTCAATTTAAAGGGA----cacacattttcctttttcctggctAGTCAGGAAACAGCTAGAGTTGGGGGCAAGGATGTTATAAGATCATCCCAGAGACACCATTGGCCTAAAACTTTTTCAATTAGC------TTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGC-ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCTCAAGTGCCCCTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctCTGCTACCTGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCATAGCTCTGGGGGCTGCTGCTGACCTGGATCCAGATGCTGTGAGAAGAGATTTCAGAGGCTACAAGAATCCCCGGAGCCGAGGAACCGCTTCATCTTTATGCATCTTTCCAATGTGTCCTGCCCTGTCTGTTTCAGGTACTGTTGGGGGTTCTCACCCACTGTTCTGAACTACCTGTGCCAACAGCCTCTTCCTTTCTAGTGTAAGCATCTCACAGTTCCACTGAGAAT---TGTACATTTCCCTGTGCCTCACtgtgtaaaaaattaaa-----agctcatTGCTGCCTTACCATTGGTGTCTTGACTGACTCTCCCTACGTCACGGGACTGGG--TCTTTCCCctgcccctcagatccagtgctgcCACAA-------------GGAAGCTACAGAATCATAGCtctagacaagaaaaaaaatcagaaacctgTTAGTTCTTTTCCTGCTGAATTTG--CAAAGTGTCGGGGACAGGAGAGGGATTGGACTGTGTCAGAATG--AATGGCTTTTCCAAGGAAATGTG------------------GCCTGCGTGTTCATCTCAGAGTGGACTCT-GCAGGTTCCTGTCCTTACTCTTTGACATTATTGATTACTTTTGATATCTTTTGATGAGC-----TGTTTCTAGCAT---------TCCAATTAAGAAAGA--GTGAATTTGTAT----------------------------TCTTCCAAAAACCAGGTAGAACAAG-------ACATTCTTTT-------------CAACTAGGAATCTGGATTTCCAGGGACTATTTGGAAATACCTTAGAACATTTTTGAAAGTCAAAACTGGAGCTTAGAAACAT-----CATTTAGTGAGTAGAGACCA-TGATGCTCCTAAATGTC---AGAAGCACAGGATAGTCTCTCATGACATGGAATTATCTGTCCCCAAGTACCAATAATGCAAAGATTGAAAG-----AAATTCAGCTAGCTAAAGAAAAGCATGGcctcaagaaaaacagaaagctcTGTCTACCCTGTAATAGGTCACAGAGAGGTAGCTAAAGGGAATTAGGTAAAGCTAAAATG---CTATGGGTCACAGAGAGGTGG-GACTGAGAGTttagaacacataaaaatatgaagaacatGGGCTatgagacacagaaaagaaaaagggtaaaatgaggagaattgaaaacattatgaATTGGTGTAATTATATGATCAAAACCTAATTTGCTTCTCATATGTGAGGAATCCCTAGGCGACTGTCATAAAtccatttaaaattgaaattaagtcttttttttaataactgtATTTCACAAATAGCAAGACTAAGACCTTTGAT-----CTAACTTTCTCTGTACCAAGACCCAGGCCACACAGCCCATGAGTCCATGCTCTTGTCCCGTCACCACTTCATTGCCCTTTGAGA--CTTTCAAGAGCTCTTTATAAACAAAGAGTCTTCTCCACTTCATGTCTTTGTTGTGCT-ATCTGTGTTCTGTTTccagttttat-ttgattttctaaatGTGCAAAGTCAGGATCCCAACATG-AAATCATGTCTTCAGcgaaataagaaatatttttttttgtttctacatTTGGGATCTAGAATGTGAAAGCCAAGTGCTGCCTAGGTTGAAGTCATCTCCTCAGAGATGAGTCCCACTCTACTTTCCAGATTGCTGAAA-TATTGGTGT-AAGGAGCTGACCCATCAGCAATGTCATCCAGATAGTTTTTGGAATACAGTGAAGAAACGTAATGGGTCTGGAACTGAATTCCAATTATAAAATCTGGGGAAATTGATGTGAGTACCAAGTGAAAAAGTAAATCTATGGCACTTTAgggattcactgatttttttttaaaagttgtggtTATGTTTTGGAAACTATTAAGCTGAGTGTTTTTGCTTCCACATCCAAGAATTCAG-----TTtgcaaaatatttgcaatttaatAAAAGTG-----TTCTCAA-CGTGATGAGAGACAAACTCTGATCTGG--CCTTCA----CCACTTTCCAACTCAGTGCAGTTCCCTGAGCTAGGATGCATAGCTGCCAAATTTAAATTTATCAGTATAAGCTGCTTATCACTGAAAACTTGAGGAATTCTTGAGAAGCAATCCACAATAGGACAGAAAAGGTTTACAAGGTTGAAAATGTACCTTAATAAATGTTTAACATGGATAAGTTTGATTACGAAGTTAGTTGTCATAGTGTGTGTGACTTCTTACCACAATGGATTGAGAGCCATGAACTCCACGGATCTGAGCAA---AACtctcctaaccctaacccctgGTCCAGAAATAGAGGACTACTGCATGAA-GAATGACTGGAGTTCATGGTACACATTCCTAAGCATGCATCAGCGAGAGA

a score=10563
s chr3           92933543 372 + 160039680 GTAGATTA--CTAACACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGGGA---------------------------------------GGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCT---------------------------------------------------------------------------------GTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAG
s HiC_scaffold_1 94993052 479 + 233722169 GTAGATGAATTTAAAACCTTTGTACTGTCTTTCAGCGCATTCATT---TCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCTAAGTGCACC---CCCAAATGCCCACCCAAGTCCCCC------------------TGCCCACCTCCAGCGTCTTCCTGCTGTAGCCTGGGCTCTAGCAGCTGCTGTGGCTCCAGCTCTGGAGGCTGCTGCAGCTCGGGTGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAAGCCCCGCCGATCTCTTCTACGCAGACACCGACACCAGAGCTCTGGCTgctgcagcagtggtggcagtaGTGGCTGCTGTGGCAGTAGCAGTAGCTGCTGtagcagcagtggtggcagtggCTGCTgcagcagtggtggtggcagtggccaGCAGTCTGGGGGCTCCAGTTGGTGTCACACCTCAGGGAGCGGCTGCTGACCTGGGCCACAAGGAGCAG

a score=11074
s chr3           92933551 381 + 160039680 CTAACACGTGTTTT-CTTTCCTTAAACAGGT-CAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCA---GGAAGAGCACAGCACAGTGTCTGCCTG---------CAGCCTCTTC------------------------CTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGTCTGGGGGGTCA-GGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCA-----TGATGTGGAGACAAGACAGTCTGGAGG
s HiC_scaffold_1 95524207 434 + 233722169 CTGATATGTGTTTTACTTTCCCTCAGCTCCTGCATCT--CTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTG---CCCTCCCAAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGA---GGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG--CTGCAGCAGTGGCGGTGGTAGTGGCCAG-CAGTCTGGGGG

a score=7339
s chr3           92933556 352 + 160039680 ACGTGTTTTC---TTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCT------------CTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGC----------ACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTG-TGCTACAAACTCTGGGGGCTGCAGTCTCCC------------CAGATCT---GAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCT-CCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 95193386 383 + 233722169 ACATGGTTTCAATTTTACTTAAA-AGTCGTTTTCACTGCAACTGAGATGTCCTGCCAGTAGTACCAGCAGCAGTGCCAGCCCCATCCCAAGTGGCCTCTAAAGTGTCTTGCCCATAAGTGTTTCCTCAAATGATTCTCAAATGTTTGTTCTCCTAACCGCACCCTGCTGATCTCCAGGCTCTTCCTGCTGTTGCT--CAGCTACTGAGACTGTAGTAGCTCTTGAGGATGATGCAGTTCTTGGGATGGTAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTCCAGTTCCACACCCAGAAGTTGCTGGATCATG----CGTGAGTGTG----ACATCTTGGGGGTTCAGGCTGCTGCCATGGCCCAGGGTGCTCCTTCTGCACTGGGCCTTGA

a score=11772
s chr3           92933560 348 + 160039680 GTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 95352896 366 + 233722169 GTTTCATTACTTT---CAGGTTGGAAAAGTCACAACAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAATGTGCCCACCCCAGTGCCCAGAGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTTGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAATGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTAAGCTGGCCCAGGA

a score=12359
s chr3           92933560 348 + 160039680 GTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 95313501 366 + 233722169 GTTTCATTACTTT---CAGGTTGGAAAAGTCACAACAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACTCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAATGCCCAGTGCCATGCCCTCCTCTGGTGTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGATGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=12514
s chr3           92933561 377 + 160039680 TTTTCTTTCCTTAAACAGG-TCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCA------------CAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT------------------------------------------------------------CAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACA-AGACAGTCTGGAGGAATCAA
s HiC_scaffold_1 95421608 441 + 233722169 ttctattttttcatctagGATCTCTTAACTCTTGCCAAAATGTCCTGCCAGCAGAACCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTTCCCCT---AAGTGCTCCCCTAAGTGTCCCCCTAAGAGTACCTCCAAGTGCTCAGCCTCATGCCTTCCTCCAGTCTCTACCTGCTGTAGCTCCAGTTCAGGGGACTGCTGTAGCTCTGGAAGT---GGGGGCTGCTGCCTGAGCCACCACAGGCCCCACCGATCTCTTCGTCACAGACACCAGAGCTCTGGCTGCTGCAATAGTGGCAGTGGTGGTGCCTGTACCTGTGGCAGTCACTGTACCTGCAGTAGTGATTGCAACTGCCGCAATAGACAGCAGTCTGGTGGCTCTGGCTGTT------GCTCTGGAGGCTACTGATGGCC-GGGCCATAAGAAGCACAAAGAAACAGCACTGAAGAATTAA

a score=10975
s chr3           92933563 369 + 160039680 TTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCA---GGAAGAGCACAGCACAGTGTCTGCCTG---------CAGCCTCTTC------------------------CTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGTCTGGGGGGTCA-GGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCA-----TGATGTGGAGACAAGACAGTCTGGAGG
s HiC_scaffold_1 95463597 421 + 233722169 ttttctccttagGCTTATTGACTTCCTCTTGA-AAAATGTCCTGTCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTG---CCCTCCCAAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGA---GGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG--CTGCAGCAGTGGCGGTGGTAGTGGCCAG-CAGTCTGGGGG

a score=11298
s chr3           92933565 293 + 160039680 CTTTCCTTAAAC---AGGTCAACTGACTC-CTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCT------------CCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGGGA---------------------GGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGC------------------------------AGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGG
s HiC_scaffold_1 95575978 348 + 233722169 CTCTCCTTCAGCTCCAGAACATCTGACCAGCTGTGGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCACCTCCCAAATGCACCCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCGCCTAAGTGC---------------CCCCCAGTCTCTTCCTGCTGCAGTGTCAGCTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGTCTGAGCCACCACAGGCGCCAGAGGTCCCACCACCACAGACACCAGAGCTCTGGCTGTTGCAGCCAGCCCTCGAGGGGCTCCAGCTGCTGTGGAGGGGGGAGTAGCCAGCAATCTGGGG

a score=23816
s chr3           92933587 704 + 160039680 ACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCAA-CATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGTTTTGTCTGATCCTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTTGTTCC----------------CACCCTTCCTGTGGAATGCATG--TGCCCATCCTTGGTTCTGACTAG-AATAAAGATT--CTATCCCCACCACACTGGTGTGTCACTGTCATTGTTCCCTGTCCCTCCACAGGTGGCAGGTATGCGCTCCTCCCCTCTAACTCTCAATTCCAGCACT-CCATAATCCAGAGGGGCCGGGGTGGGAGGAAACCATAGCTCT----ACACAGGAAAAGTTTAGAATTCT-----GTCAGACATGTTAATATTCACTTGGGTTGAAGCAGCAGGGGAAA
s HiC_scaffold_1 95282186 714 + 233722169 ATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCTGCCCCCTCCCAAGTGCCCCGC------------CCCCAAATGCCCCCAGAAGAGCCCAGCACAGTATCTACCTGCTGctccttcctgctctgctcccagcTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTCTGGAGATCAGACTCCTGTGATGGCGACAGTGGTCTGCAGTCTGGAGACTTTGGCTGTGGCCACAGCTCTGGGGGCTGCTGTTGACCTGAAATCTGATGCTGAGACAAAAGATTTCAGAGGTTACAAGAATCCCAAGAACCACGGAA---CAGTTTCATCTTGATGCATCTT-TCCAATATGTGCTGCCCTGGCTGTTGATTTTTCCCAGTAGCTCTTTCTGTCAAAAATATCTCACACTATTGCTGAGGATTGTATACTTCACTGTGCCTCACTCtgtcaagaaataaaaacttgcTATTTCTTTACCACTGACATCTTATGGTCATTTCACCTTGACTCTCCCCAGGTGGCTGGTCTGTGCCCTTGTCCTCTGCCTCTCAGATCTGCTGCTGCCACAA---AGATGGTGCGGAGT----------CATTgctctagaaaaacaaaaaaaacaaaaaaacccctggAGTCCGTTCTTTTCATGGTGAATTTG--TGAGGCAGCAAGGGAGA

a score=10749
s chr3           92933590 306 + 160039680 CCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACC------------TCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCT--CTTC------CTGCTGTGCTACAAACTCTGGGGGCT------------GCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCG-----TGGCAGTGGTCAGCAG-TCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGA
s HiC_scaffold_1 95541464 345 + 233722169 CCTACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAATGCCCTCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCCCCTAAGGCCCCAGTCT--CTTCTTGCTGCAGCCTGGGTTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGTTGCAGCTCTGGTAGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCGCCGCAGGTCCCACCGCCATAGACACCAGAGCTCTGGCTGCTGCagccagccctcgggaggctccAGCTGCTGTGGAGGG---GGAAGCAGCCAACAGTCTGGAGGTTGCTGCTAA

a score=8370
s chr3           92933594 280 + 160039680 CCAAGATGTCCTGCCAGCAGAGCCAG-------AAGC-------AGTGCC--AACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGGGAGG---CTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCA
s HiC_scaffold_1 95304800 291 + 233722169 CCAAGATGTCCTACCAGTAAAACCAATCATGCCAAGCCTTCCAAAGTGCCCCAATTGCATCCCAAGTGTCCA----CATAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCATCATGCCCTCCTCTGATCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCTAGTTCTGGGGGTGGTgactgctgccccagccaccaCAGGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTACTGTGAGTGTG-----AGTC--CAGT---GGGGACTTGGCTGCTGCCA

a score=12334
s chr3           92933594 311 + 160039680 CCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGT------------GTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---------------------------GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG------GTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCA
s HiC_scaffold_1 95388587 356 + 233722169 CCAAGATGTCCTGCCAGCAAAACCAGCAGCAGTACCAGCCCCTTCCTAAGTGTCCACCCAGGTGCACCCCAAAGTGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGGTGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGCTGCTGAGCTGGGCCA

a score=9484
s chr3           92935924 872 + 160039680 ATGTCTCTCTAGTGTTAAGAGGAAGATTTAACAACCCTAATTTAAATGCACCTT-----------------GCATGGTGTGAATATATCATGTCAATAGCTCTGTCATGT-----GTACACAAATCACTGTCACATTTGTTTGCTAT------------------TGATCAGATAATCCCTTCTCTG------------------TATACCAATCCAAATGAGTTAGCACCTTCTATGACCT----AGGGCTGAAGCTTAGAGATA--TGCAAAGTGGCAGAATCACAATTCATTGAGGAGATGTTGTTTGGATAGTGA-TCTGACATCTGAACTAAGTTGTGCTTTCACCACACAGTAGCCTTGTCTCTCCCGGAACACCCATACCTTCAGACAGTCATCATCCATACAGATCAGGATACAAAG-----------CCAGGAATACTGGGCTCCTGAATCAGGGTTTTTACTGAGAATAGTAGTCTGCTATTACTATACATAAAATTTTGCTC----TCAGATATGAGTGCTATGTGCACTGTATGCTCT-CTAGGGA--CCTCTCTCCTCTGGGTTTCATGCATTACTCTC-AGTG----CCTGAGAACAGGCTACCCTCCCCCTCTTTGGTAGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCA--TTCCCAACACTGTCATCTCTGACAGGCTACTGACCCCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAAAAAAAACTTATACCTGTGAACTCTTACCTAAACCTGATTACTCCT--CAGGTGTTCATCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACGGTCTGTCCTGTTACACAGCAAGTTATACAACCAGGACTGTACCATACATGTTGGTGATTATGCG--TTTATCACCTCATGAGTTAAATGTCTATCACAGT
s HiC_scaffold_1 95285467 897 + 233722169 ATGTTTCTGTAAAATTCACAAAATGTCTGCACAGC--TAATTTAAGTGCAACTTCTACACACAATTTCTACACACAATGCAATTTCACCATGACATCCATTGTATTATGTAAGAAGTCTGGATACCGCTGACGCATCTATCTAGTATCTATTATTATTTACCTTCTAACTAAAAAAGTCCGTCTTTCAGCAAGATTTATGCTGGCTTTCCCAGGCTCAGTGACTCAGCGCTTTCTCTGACTTtttcatgaaagaaatttaaaaacacatgaaagGCTTTTGAGCCATGGCTTATC----AGATGTAGGTTAGACTTCCACTCTAACATCAAGGTTGA-CTGTGTTCGCATTACATTGTAGCCTTCCCAATCCTC-AACACCTCTACCTTCGGATAGATATCAAC--------TGAGGAAACAAGGAATCCATTTCACCACGGA----GTGTTCCTAGAGAGTGTTTTGTGCTGA-------------CCTTTTCTATGC-------TCTGCCCCACCTCAGACTTCTGCTCTATTTACATCCCTTCTTCTGTTAGGGATACCATTGCCTACAGTATTTCATGGGTCCCTCTCCAGTGTCCCCCTGA---------AGCTGCTGCTAATATAAGGAGGTAGGATTTCTCATC----TCCTGTCTCTGCAGCTTCCCAG---TGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAGCATTTCAACACACGAGGT-----ACATAGGACTGACACCCAGCAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGCATGATTACTTCATTGTCTACCCTGTTACCCACC--------TGAGCAGGATCATATCATATTCACTTATGATTAAACACCTTTATAGCTTTATGGATTGTGTGTCTACTGCAGT

a score=26426
s chr3           92944301 1294 + 160039680 GCAGGCATGAGTGCAAAGTCACATTTCCCAGGTTCCATGCTGGTGGTAATTGTAGTAGGAACTCAGAAAGATGATGAATGGATGATCCTGGCT---------CTGTCAACTCCCCTGT-TGAGAAAG-AACAGCATGCTTGGCCTGTGCATCACACACCTGTCA-AGGATAAAAGAGCTGCTGCCCTGAACCATTCAGCCACAGCCTCTTCAGC-ACAGCCTTCTTC----TCCTGCCTTTGCTGTATCTGGTGAGTACCTAACTAGGGATATGACCTCAGATAAGACCCTGTGTAAGGATGACAAGCTGGACTAGACTGGGCTTAAAGGGCCTCAGCTAAAAGCAAGTGGAGATTAGAAACTGGAATTGATTGGGCTCAAAGAAGCAGAAGTGTCT-----------AGAAGAGAGTACAGGAATTTGACCAAGAGATGAGGGCCAAGAGAGAGGGAGGA-GAGCACAGAGAGGAGCCTTTGTGGTTACCTCAGGAGCTGTGACAAAAAAAAGAGTCCTGGATCTCAGCACTGCCT--CTACTATGATGGGGGTCTGTGTCAGCCCAGAGTTTCCTCCAAGAGTCATTTTCTCATTACCTATACTAGTTACAGTTCAGCAGAGAGCTAATTAGATATATCCACATCCCC--TCCTGCAATTAGGGAAAAATGCAAGACAATGCCTTGCCAGACATTGAGATCAGATACTTTTTGCCTTTCTAAAGTTCATTGTTCTGAGGGCACTTACTGGGGATGCATGCTGAACTTTGTGATAATCTAAAGAATGCGATCTTCAAATTGATGTGTACCTCTATGTGTCTGTTTATTTCATAGAAATCTTGACTATGAAAGTCAGATAGGTCATGGAAGGCAGGCATTTGACAGACTAAGTCAGTAGACAC--TCAACAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCA-GCATCCCAGGGGTCAA-GAAAAGCC
s HiC_scaffold_1 95074072 1117 + 233722169 GCAGGCGGGAAAGTGACTTCCGGTTTCCCGCGTGTCAGGCAAG--------ACAGGGAGCACACAGGAAGTCGGTGAATGGATGGCGCTGGCCATGCCCTGGCTGTTACCTCACCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCGTCCAGCAGGGCACA--------------------------GATGCCCAGTCAGGAGAGCGTGGG------------------AAGATAAGCACAGACTGCAGAGGGGAAG-----------AGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTA---GAACCTG----------GAGGGCAGTAGGAGGCAGGGGATGGGGACAGGGGGCAG----------------GGAAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCTAAT----------------------GCAAGGG-------------ATTCACTTCACTGTTTCTGTGAATACAGAGGACTCCAAGTC--------------CAGTTAGAACAGTCACCT---GCTCTTCCAAAGTAAAGTG----GAAGGAAAT------GTTTCCATTCAG-----------------------------TTTAAAGGgatatacattt---------tcctttttcctcaggaAGC-----------AGCTAGA------GTTGGGGGCAAGGATTTTATAAAATGATCCCAGAGATACCATTGGCCTAAAACTTTTTCAATGA-GCTTTTTCCTTGCTCTCTCCAGGTTCCCCGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCCTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGTGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGCCTGCTGCTGACCTGGATCTTGATGATGCGC----ACATTTCAGAGAAAACAGGAATTCTAGGAGCCAATGAGAAGCC

a score=30138
s chr3           92944390 1756 + 160039680 GGCTCTGTCAACTCCCCTGT-TGAGAAAG-AACAGCATGCTTGGCCTGTGCATCACACACCTGTCA-AGGATAAAAGAGCTGCTGCCCTGAACCATTCAGCCACAGCCTCTTCAGC-ACAGCCTTCTTC----TCCTGCCTTTGCTGTATCTGGTGAGTACCTAACTAGGGATATGACCTCAGATAAGACCCTGTGTAAGGATGACAAGCTGGACTAGACTGGGCTTAAAGGGCCTCAGCTAAAAGCAAGTGGAGATTAGAAACTGGAATTGATTGGGCTCAAAGAAGCAGAAGTGTCT-----------AGAAGAGAGTACAGGAATTTG------ACCAAGAGATGAGGGCCAAGAGAGAGGGAGGAGAGCACAGAGAGGAGCCTTTGTGGTTACCTCAGGAGCTGTGACAAAAAAAAGAGTCCTGGATCTCAGCACTGCCT--CTACTATGATGGGGGTCTGTGTCAGCCCAGAGTTTCCTCCAAGAGTCATTTTCTCATTACCTATACTAGTTACAGTTCAGCAGAGAGCTAATTAGATATATCCACATCCCC--TCCTGCAATTAGGGAAAAATGCAAGACAATGCCTTGCCAGACATTGAGATCAGATACTTTTTGCCTTTCTAAAGTTCATTGTTCTGAGGGCACTTACTGGGGATGCATGCTGAACTTTGTGATAATCTAAAGAATGCGATCTTCAAATTGATGTGTACCTCTATGTGTCTGTTTATTTCATAGAAATCTTGACTA--TGAAAGTCAGATAGGTCATGGAAGGCAGGCATTTGACAGACTAAGTCAGTAGACAC--TCAACAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGA-ATCAGCATCCCAGGGGTCAAGAAAA--------------------GCCCAGCTAGTCTTGTTTTATCTGATCC---------TGGAGAGTCTTCTCTGCCTGTCTGATGCTCACTGCCCTTGT------TCCCTTCCTTCCTGTGGAATGCA---------------------TGTGCCCATCCTTGGTTTTGACTAGAATAAAGATTCTATCCCCACCACACTGGTGTGTCACTGTCA--TTCTTCCCTGTCCCTCCACAGGTTGCAGGTATGTG------CTCTTCTCCCCTAATCCA----TATCATAAAAAAAC-----AACCATAGCTCTACACAGG--AAATGTTGAGGGGTCTGTCAGGCATGTTAATGTTCACTTGG----GCTTAAGCAGCAGGGGAGGAAATGGAAACTCCAGTCCTGTAACAAGGAATGATATGTCCTATGACATGAAAACTGTATATTCATCTCAAAGTAGA--------------------ACCCTAAGACTACCTTGATGAGCTACTGTCTGCTTTGATGAGTGATTTCTAGCA-TCTAATT-AGTAACTCTGACTCTGTAGTTAGGTAAGTAGTCAAATAGAGTAGCCAGTTCTTTTAAAGTAGGGATGTTGTGGTTTTCTGTGGAGTGTCTAAAAACACCCAGAGACAATTTTG
s HiC_scaffold_1 95088011 1669 + 233722169 GGCTCGGTCACTTCCGCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCTGGTAAGCATCCAGCAGGGCACA--------------------------GATGCCCAGTCAGGAGAGCGTGGG------------------AAGATAAGCACAGACTGCAGAGGGGAAG-----------AGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTA---GAACCTGGAGGGCAGCAGGAGGC-AGGGCATGGGGACAGGGGGCAG----------GGAAGCTCTGTGG--------GATGCTT------------GAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCCAA----------------------AGCTGGGA-------------ATTCACTtcactatttctgtgaatacagaGGACTCCAAGTC--------------CAGTTAGAGCAGTCACCT---GCTCTTCCACAGTAAAGTGG---AAGGAAATGTATT-----TCCATTC-------------AATTTAAAG----------------------GGAcacacattttccttttt-------------cctggctAGTCAGGAAACAGCTAGA--GTTGGGGGCAAGGATGTTATAAGATCATCCCAGAGACACCATTGGCCTAAAACTTTTTCAATTA-GCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCTCAAGTGCCCCTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctCTGCTACCTGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCATAGCTCTGGGGGCTGCTGCTGACCTGGATCCAGATGCTGTGAGAAGAGATTTCAGAGGCTACAAGAATCCCCGGAGCCGAGGAACCGCTTCATCTTTATGCATCTTTCCAATGTGTCCTGCCCTGTCTGTTTCAGGTACTGTTGGGGGTTCTCACCCACTGTTCTGA-----ACTACCTGTGCCAACAGCCTCTTCCTTTCTAGTGTAAGCATCTCACAGTTCCACTGAGAATTGTACATTTCCCTGTGCCTCACtgtgtaaaaaattaaa-----agctcatTGCTGCCTTACCATTGGTGTCTTGACTGACTCTCCCTACGTCACGGGACTGGGTCTTTCCCctgcccctcagatccagtgctgcCACAAGGAAGCTACAGAATCATAGCtctagacaagaaaaaaaatcagaaacctgTTAGTTCTTTTCCTGCTGAATTTGCAAAGTGTCGGGGACAGGAGAGGGATTGGA--------CTGTGTCAGAATGAATGGCTTTTCCAAGGAAATGTGGCCTGCGTGTTCATCTCAGAGTGGACTCTGCAGGTTCCTGTCCTTACTCTTTGACATTATTGATTACTTTTGATATCTTTTGATGAGCTGTTTCTAGCATTCCAATTAAGAAAGAGTGAATTTGTATTCTTCCAAA-AACCAGGTAGAACAAGACATTCTTTTCAACTAGGAA---TCTGGATTTCCAGGGACTATTTGGAAATACCTTAGAACATTTTTG

a score=25653
s chr3           92945021 1056 + 160039680 GATGCATGCTGAACTTTGTGATAATCTAAAGAATGCGATCTTCAAATTGATGTGTACCTCTATGTGT--CTGTTTATTTCATAGAAATCTTGACTATGAAAGTCAGATAGGTCATGGAAGGCAGGCATTTGACAGACTAAGTCAGTAGACACTCAACAGAAGCTTCTCCCTATCA-CGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGG-AATCAGCATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGTTTTATCTGATCCTGGAGAGTCTTCTCTGCCTGTCTGATGCTCACTGCCCTTGTTCCCTTC----------------CTTCCTGTGGAATGCATG--TGCCCATCCTTGGTTTTGACTAG-AATAAAGATT--CTATCCCCACCACACTGGTGTGTCACTGTCATTCTTCCCTGTCCCTCCACAGGTTGCAGGTATGTGCTCTTCTCCCCT--------AATCCA----TATCATAAAAA-----AACAACCATAGCTCT----ACACAGGAAATGTTGAGGGGTCT-----GTCAGGCATGTTAATGTTCACTTGGGCTTAAGCAGCAGGGGAGGAAATGGAAACTCCAGTCCTGTAACAAGGAATGATATGTCCTATGACATGAAAACTGTA----TATTCATCTCAAAGTAGAACC-CTAAGACTACCTTGATG--------------------AGCTACTGTCTGC-----------TTTGATGAGTGATTTCTAGCATCTAATT--AGTAACTCTGACTCTGTAGT---TAGGTAAGTAGTCAAATAGAGTAG
s HiC_scaffold_1 95282002 1104 + 233722169 GATCCATGTTGCATCTTG------------GAAGACCTTATCCAAGTGCCTGTGC-CCTCTATAGGATACCGTCTCCTTTTCACAGATATTGGCTTACAAAGCAGGTTGGATGAAGGAAGG---ACATTTAACAAACTGAATGAA-AGACACTGTTATGAAGTTTCTGGgtttaaatatttgcattttatt--tcaaggtAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCTGCCCCCTCCCAAGTGCCCCGC------------CCCCAAATGCCCCCAGAAGAGCCCAGCACAGTATCTACCTGCTGctccttcctgctctgctcccagcTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTCTGGAGATCAGACTCCTGTGATGGCGACAGTGGTCTGCAGTCTGGAGACTTTGGCTGTGGCCACAGCTCTGGGGGCTGCTGTTGACCTGAAATCTGATGCTGAGACAAAAGATTTCAGAGGTTACAAGAATCCCAAGAACCACGGAA---CAGTTTCATCTTGATGCATCTT-TCCAATATGTGCTGCCCTGGCTGTTGATTTTTCCCAGTAGCTCTTTCTGTCAAAAATATCTCACACTATTGCTGAGGATTGTATACTTCACTGTGCCTCACTCtgtcaagaaataaaaacttgcTATTTCTTTACCACTGACATCTTATGGTCATTTCACCTTGACTCTCCCCAGGTGGCTGGTCTGTGCCCTTGTCCTCTGCCTCTCAGATCTGCTGCTGCCACAAAGATGGTGCGGAGTCATTgctctagaaaaacaaaaaaaacaaaaaaacccctggAGTCCGTTCTTTTCATGGTGAATTTG--TGAGGCAGCAAGGGA------GAGGACTATGGCCTCTGAGGAAGGAA-------GCCTTTTCCAAGCAAAGTGCATGGCTGTTCATCTCATAG--GAACTGCGCAGGCTCCTCTGATGGTTTTTGcatacttttttgaaattattgcttacatttgatattttttgaTAAGCCGTTACTGGCATTTAATTTAAGAAACAGTGAATTTGTAGTCTATAGTTATCTAG-CAACTATAGTAG

a score=5090
s chr3           92945168 479 + 160039680 CACTCAACAGAAGCTTCTCC-CTATCACGTTTCTATCCTACTCTTCTAGGTCC--AGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaa-agAGCACAGCACAGTGTCTGCC-TGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGG------CTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCAGCATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGTTTTATCTGATCCTGGAGAGTCTTCTCTGCCTGTCTGATG
s HiC_scaffold_1 95080627 397 + 233722169 CACTGACCAGAGGCTTCTGCGTTATCAAGCTTGTCTGATTCTCTCTGAAGTCTCTGACCTCTACAGGGATTCCCTGCCAGCAAAACCAGCAGCAAT------------------------------AGTGGTACACAA---GTATCTCAATAAAACCTACCTCAGTATCCACCACACATTCATTCCC------------AGCTCCAGGGACCACAG------CAGCT-GGGGGCAGGTGATAACTGCTACTTGAG---------------GGTCCATCTTTTCAG----AGCATCCCAGAGTCCTG--GCGGATGTAGTTGTGAGCTACCTGGG--CTCCAGGTGCTGCCATGGCTCTGGAGACTGCTGTTGATCTGGCCAGTGAGATTGAGATGAGCAGTTTTAGAGAAATCAGAAACTCAAAACCCAAGGA------------------TTAACCTCGTTCTGAAGTATCCTCCCAGCTTCCCTACTG

a score=18359
s chr3           92945178 465 + 160039680 AAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCAGCATC-CCAGGGGTCAAGAAAAGCCC---AGCTAGTCTTGTTTTATCTGATCCTGGAGAGTCTTCTCTGCCTGTCT
s HiC_scaffold_1 95247510 438 + 233722169 AAGTTTCTCTCTG---AGCTTTTTCCTTGCTCTCTCCAGGTTCCCACACTGCACTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcc---tcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCATCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAG-GGTCTGCAGTCT-GGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACATAGA----------GAGAT------TTCTGAAGAAAGCAGAGTCTCCAATGACCAAGAGAAAGCCTCAAGCTGGCACTCCTT-------TCCCAGGGATCCTTGGCTGTCTTTCT

a score=20433
s chr3           92945178 390 + 160039680 AAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGT--CCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGG--GCTGCAGTCTC---CCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAA
s HiC_scaffold_1 95108170 385 + 233722169 AAGTTTCTCTCTGAGATTTTTC---CTTGCTCTCTCCAGGTTCCCTGACCGCACTGAGATGTCCTGCCAGAAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGTCCCTC------------CCCCAAATGGCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGTAGTCTGGGTGCTCTGGCTGTGGCCACAGCTCTGGGGGATGCTGCTGATCTAGATC-TGATGTTCAGATGAGAGATTTCTGAGCAA

a score=9386
s chr3           92945189 388 + 160039680 TATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTG----CCGAGATGTCCTGCCAGCAGAGCCAG-------AAGC-------AGTGCC--AGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGG---CTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTG--CTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCAGCATCC
s HiC_scaffold_1 95304760 385 + 233722169 TGTCATTGTTCTAGTTTACTTT---AGGTGTACTCACTGAACTCCAAGATGTCCTACCAGTAAAACCAATCATGCCAAGCCTTCCAAAGTGCCCCAATTGCATCCCAAGTGTCCA----CATAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCATCATGCCCTCCTCTGATCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCTAGTTCTGGGGGTGGTgactgctgccccagccaccaCAGGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTACTGTGAGTGTGA----GTCCAG-----TGGGGACTT-GGCTGCTGCCA----------AGTTGTTGAACTGGGCTGGGAGAAGCTACTGAGAAAA-------TGGATGATCCAGAACCC

a score=13694
s chr3           92945195 340 + 160039680 GTTTCTATCCTACTCTTCTAGGTCC----AGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCA------------CAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT------------------------------------------------------------CAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGG
s HiC_scaffold_1 95421606 406 + 233722169 gtttctatttt-ttcatctagGATCTCTTAACTCTTGCCAAAATGTCCTGCCAGCAGAACCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTTCCCCT---AAGTGCTCCCCTAAGTGTCCCCCTAAGAGTACCTCCAAGTGCTCAGCCTCATGCCTTCCTCCAGTCTCTACCTGCTGTAGCTCCAGTTCAGGGGACTGCTGT------AGCTCTGGAAGTGGGGGCTGCTGCCTGAGCCACCACAGGCCCCACCGATCTCTTCGTCACAGACACCAGAGCTCTGGCTGCTGCAATAGTGGCAGTGGTGGTGCCTGTACCTGTGGCAGTCACTGTACCTGCAGTAGTGATTGCAACTGCCGCAATAGACAGCAGTCTGGTGGCTCTGGCTGTT------GCTCTGGAGGCTACTGATGGCCGGG

a score=11674
s chr3           92945217 325 + 160039680 TCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGC-ACAGTGTCTGCCTGC---AGCCTCTTC--------CTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCC------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCT---------------------------------------------------------------------------------GTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 94993091 433 + 233722169 TTCATTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCTAAGTGCACC---CCCAAATGCCCACCCAAGTCCCCCT------GCCCACCTCCAGCGTCTTCCTGCTGTAGCCTGGGCTCTAGCAGCTGCTGTGGCTCCAGCTCTGGAGGCTGCTGCAGCTCGGGTGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAAGCCCCGCCGATCTCTTCTACGCAGACACCGACACCAGAGCTCTGGCTgctgcagcagtggtggcagtaGTGGCTGCTGTGGCAGTAGCAGTAGCTGCTGtagcagcagtggtggcagtggCTGCTgcagcagtggtggtggcagtggccaGCAGTCTGGGGGCTCCAGTTGGTGTCACACCTCAGGGAGCGGCTGCTGACCTGGGCCACAA

a score=11671
s chr3           92945224 306 + 160039680 CCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCC------------TCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCT--CTTC------CTGCTGTGCTACAAGCTCTGGGGGCT------------GCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCT---------------GTGGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95541464 345 + 233722169 CCTACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAATGCCCTCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCCCCTAAGGCCCCAGTCT--CTTCTTGCTGCAGCCTGGGTTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGTTGCAGCTCTGGTAGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCGCCGCAGGTCCCACCGCCATAGACACCAGAGCTCTGGCT------------GCTGCagccagccctcgggaggctccAGCTGCTGTGGAGGGGGAAGCAGCCAACAGTCTGGAGGTTGCTGCTAA

a score=10337
s chr3           92945225 397 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGT---------GGCCACAGC------TCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCAGCATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGTTTTATCTGATCCTG
s HiC_scaffold_1 95586344 388 + 233722169 CTGTGGAGATGTCCTTCTAGCAGAACCGGCCACAGTGCCAGCCCCCTCCCAAGTGCACC---CCCAAGTATCCT--------ACCTCTAAAGGCCCCAAAGTAGTGTCCCCCTAAGTGGCTCCCAGTCTCTTCCTGCTGCAGGGTCAGTTCTGGGGGCTGCTG------CAACTCTGGGGGTAGTGGCTGCTGTCTGAGCCACCACAGGCACTGCTGGTCCCACTGCCACAGACATGAGAGCTCTGGCT------------GCTGCAGCCAGCTG-CTGGGGTCTCCAGCTGCTATAGAGAGGGTGGCAGCCTACAATCTGGAGGCTGCTGTTGAAGTGGACTCTGA-ACTTAAATAAGAAGACTTGAATGAAGCA-------AGTGGTC-AGATAGTTTCTCCTTATCTTCCTTTTCCTGGATCTG

a score=12085
s chr3           92945225 305 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgct---ccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGA---------------------GGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCT---------------GTGGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95576008 328 + 233722169 CTGTGGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCACCTCCCAAATGCACC---CCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCGCCTAAGTGC---CCCCCAGTCTCTTCCTGCTGCAGTGTCAGCTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGTCTGAGCCACCACAGGCGCCAGAGGTCCCACCACCACAGACACCAGAGCTC---------TGGCTGTTGCA---GCCAGCCCTCGAGGGGCTCCAGCTGCTGTGGAGGGGGGAGTAGCCAGCAATCT-GGGGCTGTTGCTGA

a score=11312
s chr3           92945225 341 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgcc---ccccaaagAGCACAGCACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCA-TGATGCTGA----GACAAGACAGTCTGGAGG
s HiC_scaffold_1 95524247 394 + 233722169 CCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTG---CCCTCCCAAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG--CTGCAGCAGTGGCGGTGGTAGTGGCCAG-CAGTCTGGGGG

a score=5268
s chr3           92945228 310 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG------CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGC
s HiC_scaffold_1 95609527 289 + 233722169 CCAAGATGTCCTACAAGCAAAACCAGCAGAAGTGCCAGTTCCCTGCCAAATGCCCC---CCAAAATGTCTACTTGATTGCCACC------------CTCAGTGCCCACAAGCTCCTTCTTCATGTCCCCCTTCTGGCTCC----CCTCCAGCCTCCTCC-TTCTG-----TGTTTCCACCCGTG-TATCTCTGGTATCTTACCGGTTTCCACGATTCTATCTGCACCAGCCCCAGTGTTCA-AACTGCTGTGAAAACCTGTCCTCTGGATGTCCTGGCTGCTGCCACAACTCCGGAGGCTGTAACTGACCTGCAAC

a score=8360
s chr3           92945228 314 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCT------------CTccaaagtgctccccaaagtgccccccaaagAGC----------ACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTG-TGCTACAAGCTCTGGGGGCTGCAGTCTCCC------------CAGCTCT---GAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCT-CCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 95193426 343 + 233722169 CTGAGATGTCCTGCCAGTAGTACCAGCAGCAGTGCCAGCCCCATCCCAAGTGGCCTCTAAAGTGTCTTGCCCATAAGTGTTTCCTCAAATGATTCTCAAATGTTTGTTCTCCTAACCGCACCCTGCTGATCTCCAGGCTCTTCCTGCTGTTGCT--CAGCTACTGAGACTGTAGTAGCTCTTGAGGATGATGCAGTTCTTGGGATGGTAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTCCAGTTCCACACCCAGAAGTTGCTGGATCATG----CGTGAGTGTG----ACATCTTGGGGGTTCAGGCTGCTGCCATGGCCCAGGGTGCTCCTTCTGCACTGGGCCTTGA

a score=11676
s chr3           92945228 337 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCC----------------TCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA-----TGCTGAGACAA--GACAGTCTGGAG
s HiC_scaffold_1 95344267 358 + 233722169 CCAACATGTCCTACCAGCAAAACCAGTAGCAATTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGTTCCAAAGTACCCACCCCAGAGCCCAGCATAATGCACTCCTTGGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGTTCTGGGGGTGGTGGCTGTTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTATTGAGAAAATGGATGATCCAGAG

a score=13605
s chr3           92945228 311 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------CTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAG------------TGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------------GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG------GTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCA
s HiC_scaffold_1 95388587 356 + 233722169 CCAAGATGTCCTGCCAGCAAAACCAGCAGCAGTACCAGCCCCTTCCTAAGTGTCCACCCAGGTGCACCCCAAAGTGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGGTGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGCTGCTGAGCTGGGCCA

a score=12754
s chr3           92945229 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------CTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 95352928 334 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAATGTGCCCACCCCAGTGCCCAGAGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTTGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAATGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTAAGCTGGCCCAGGA

a score=13341
s chr3           92945229 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------CTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 95313533 334 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACTCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAATGCCCAGTGCCATGCCCTCCTCTGGTGTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGATGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=10804
s chr3           92945231 335 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgcc---ccccaaagAGCACAGCACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCA-TGATGCTGA----GACAAGACAGTCTGGAGG
s HiC_scaffold_1 95463630 388 + 233722169 AAATGTCCTGTCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTG---CCCTCCCAAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG--CTGCAGCAGTGGCGGTGGTAGTGGCCAG-CAGTCTGGGGG

a score=10716
s chr3           92948387 768 + 160039680 TCCCAACCCAAATGAGTTAGCTCCTTCTGTGACCTATGTGTGAAGCTTGGAGAAATACAAAAA-----GGTAGACTCACAAG---TTGTTTAGGAGATGTTGATTAGGTCTTTA-TATAATATTTGAATT-ACTTTGTACTTTTCACCACACAGTAGCATTGTCTATCCAGGAACACCCATACCTTAAGACAGTCATCACCCATAGAGATCAAGATTTAA---AGCCAGGAACACTGGGCTCCTGGTTGAGCATTTT-TACTGAGAGAGTTATTCTCCTCTTACTATACATGAAACTTTACTT----TCAGATATGAGTTATGTGTGGAGAGTCAGCTCTC----TAGAGACCTCACTGCTTTCTGGGTTTCATGTATTACTCTC-AGTGACCCAGAAACAGCTACCCTCCCCCCCCCAGCCCCCACACCTTTGGAGGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCA--TTCCCAACACTGTCATCTCTGACAGGCTACTGACCTCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAATACTGATACCTGTGAACTCTTACCTAAACCTGATTACTCCT--CAGGTGTTCACCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACTGTCTGTCCCGTTACACAGCAAGTTATACAACCAGGACTGCACCATACCCATTTGTTGCTAGATGCGTTTATCACCTCATGGGTTAAACATCTATCACAGTAATCTGTTATGTAATACCAGTTTGATTTCT
s HiC_scaffold_1 95285672 721 + 233722169 TCCCAGGCTCAGTGACTCAGCGCTTTCTCTGACTTtttcatgaa------agaaatttaaaaacacatgaaagGCTTTTGAGCCATGGCTTATCAGATGTAGGTTAGACTTCCACTCTAACATCAAGGTTGACTGTGT---TCGCATTACATTGTAGCCTTCCCAATCC-TCAACACCTCTACCTTCGGATAGATATCAACTGAGGAAACAAGGAATCCATTTCACCACGGA----GTGTTCCTAGA-GAGTGTTTTGTGCTGA-------------CCTTTTCTATGC-------TCTGCCCCACCTCAGACTTCTGCTCTATTTACA---TCCCTTCTTCTGTTAGGGATACCATTGCCTACAGTATTTCATGGGTCCCTCTCCAGTG-------------------TCCCCCTGAAGCTGCTGCTAATATAAGGAGGTAGGATTTCTCATC----TCCTGTCTCTGCAGCTTCCCAG---TGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAGCATTTCAACACACGAGGT-ACATAGGACTGACACCCAGCAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGCATGATTACTTCATTGTCTACCCTGTTACCCACC--------TGAGCAGGATCATATCATATTCACTTATGATTAAACACCTTTATAGCTTTATGGATTGTGTGTCTACTGCAGTGCTGT-TTCTACAGTGTCTATTAGTtttct

a score=29979
s chr3           92956989 1456 + 160039680 TGACTCTGTATTTACAACTATATGTAT--TCATATTTTCACCTCTTTCCTAATAGATCATAATCAACCCAAGAAAAA--AAATATCATAGTAACCCATGCTATGGCTTCACAGACAAGACCATGGACAAGATCTTGTATTTAAGAACATGAACAGAATAAACATGATAAAGGTGTGTGAAGAACAGCCCCATATCTTCTCATTGTCAGGCAGACCTGAGTGAAAAGTCAG-AGACATCAAAAT---TTCCTGGCTCTCTACTGATGGTAATTGTAGTAGGAACATGGAAAGATGATGAATGGATGATCCTGGCT---------CTGTCATCCCCTCTGT-TGTGAAAGCATCAGCATGCTTGGGCTGTTCATCACACATC-TACCAAGGATAAAAGGGCTGCTGCCCTGGATCATTCAGCCACAGCTTCTTCTAC-ACAGACTTCTTC----TCCTGACTTTGCGGTATCTGGTGAGTACCTAACTAGGGGAAGAGCCTCAGCTAAAAAGGGGTAGAGATGACAAGCTGAACTTGACCAAGGTGAAA---GAAGCAATGGTATCAAGAGTGAAGGCAGCAGGAAGTGGACCTCACAGGG-ACCAAGAGACAGGGAGGGAAATGGACAAGAGCCTCTGTGGGTACATCAGGAA----CTGTGACACACCAGAATCTTAGATCTCAGCATTGCCTCTGCCTCCTCTCCACTAAGAGCTATTCATCAACCCAGAGGATTCGCCATAGGGTTATTATCCCAT--------TACCTTTATTTGCTACTTTTAGCAGAGAGA----------CACTTAGAAGTATCAATATCCCTTCCTGCAAGTAGGGCTAAAAGGAAGACAATGTTTTACAGGTCAAAATCAGTTCCCCTTTGTCTTTGTAAAAAGATCATTGTTCTGAATCCATTTACTAGGGATGCATGCTGACCTATCTGATAGTCTTGAGAATGCTGTGTTCACATAGATGTATACTTCCACGTTGCTGTTTATTTCATAGAGATCTTGGCTTAGGAAGCAGATAGGTCAGGGAAAGCATGTGTTTGACAGTCTAAGTCAGTAGA---CATTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACA-GCATTCCAGGGGTC-ATGAAAAGCCCAAC
s HiC_scaffold_1 95073889 1304 + 233722169 TGTCTGTGTctttatgtctgtgtgtgtgttaatgTCTGACTCTCTTTCCTGACAGACCATGAGCTATATGAGTACAAGGAAGAGCCATG----TCCATCCAGTAACATCATAGCAAAGAACCTGAATGAAA-----------------------GAATACAAGTtctcagggaa----aagaagggaCCCACA---------------GCAGGTCTGAGAGAGATGACAGCAGGCGGGAAAGTGACTTCCGGTTTCCCGCGTGTCAGGCAAGACAGGGAGCACACAGGAAGTCGGTGAATGGATGGCGCTGGCCATGCCCTGGCTGTTACCTCACCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCGTCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGTGG-GAAGATAAGCACAGACTG-CAGAGGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAACCTGGAGGGCAGTAGGAGGCAGGG---GATGGGGACAGGGG--------------GCAGGGAAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGC--CCCCTAGCTCCTTCC---TGAGAGACACACAGGGGCCCAGAGAGCTCTGCA-GGAGCTACTCTCTAATGCAAGGGATTCACTTCACTGTTTCTGTGAATACAGAGGACTCCAAGTCCAGTTAGAACAGTCACCTGCTCTTCC-------AAAGTAAAGTGGAAGGAAATGTTT------------------------------------------------------CCATTCA--------------------------------------------GTTTAAAGGgatatacattttc----------ctttttc-------------ctcaggaAGCAGCTAGAGTTGGGG--GCAAGGATTTTATAAAATGATCCCAGAGATACCATTGGCCTAAAACTTTTTC--AATGAGCTTTTTCCTTGCTCTCTCCAGGTTCCCCGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGTGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGCCTGCTGCTGACCTGGATCTTGATGATGCGC----ACATTTCAGAGAAAACAGGAATTCTAGGAGCCAATGAGAAGCCTCAC

a score=32690
s chr3           92957219 1790 + 160039680 ATCAAAATTTCCTGGCTCTCTACTGATGGTAATTGTAGTAGGAACATGGAA--------AGATGATGAATGGATGATCCTGGCTCTGTCATCCCCTCTGT-TGTGAAAGCATCAGCATGCTTGGGCTGTTCATCACACATC-TACCAAGGATAAAAGGGCTGCTGCCCTGGATCATTCAGCCACAGCTTCTTCTAC-ACAGACTTCTTC----TCCTGACTTTGCGGTATCTGGTGAGTACCTAACTAGGGGAAGAGCCTCAGCTAAAAAGGGGTAGAGATGACAAGCTGAACTTGACCAAGGTGAAA---GAAGCAATGGTATCAAGAGTGAAGGCAGCAGGAAGTGGACCTCACAGGG-ACCAAGAGACAGGG----AGGGAAATGGACAAG-AGCCTCTGTGGGTACATCAGGAACTGTGACACACCAGAATCTTAGATCTCAGCATTGCCTCTGCCTCCTCTCCACTAAGAGCTATTCATCAACCCAGAGGATTCGCCATAGGGTTATTATCCCA---------TTACCTTTATTTGCTACTTTTAGCAGAGAGA----------CACTTAGAAGTATCAATATCCCTTCCTGCAAGTAGGGCTAAAAGGAAGACAATGTTTTACAGGTCAAAATCAGTTCCCCTTTGTCTTTGTAAAAAGATCATTGTTCTGAATCCATTTACTAGGGATGCATGCTGACCTATCTGATAGTCTTGAGAATGCTGTGTTCACATAGATGTATACTTCCACGTTGCTGTTTATTTCATAGAGATCTTGGCT---TAGGAAGCAGATAGG--TCAGGGAAAGCATGT-GTTTGACAGTCTAAGTCAGTAGACATTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAAC-AGCATTCCAGGGGTCATGAAAA--------------------GCCCAACTAGTCTTGTTTTGTCTGATCC---------TGGAGAACCTTCTCTGCCTGTCTGA--TGCTCACTGACATTGTTCCCATCTTTCCTGTGGAATGCA---------------------TGTGCCCATCCTTGCTTTTGACTAGAATAAAGATTCTATCCCCACTACACTGGTGTGCCACTGTCATTTTTCCCTATCCCTCCACAGGTTGCAGGTATGTGTTCTTCCCCTCTAACTCACAATTACAGCACTCCATGATCCACAGC-GTAAAAAAAAAAAAAATCAATCATAGCTCTATACAGG--AAAAGTTTAGGGGTCTGTCAGACATGTTAATGGTCACTTTGGTTTAAGCAGCAGGGG-AGGAAATGGGCAGGACTGGGGTCTCTAACAAGGAATGGTATGTCCTATGACATGTGGAGTGTAT-TTCATCTCACAGTAGAA-ATGTAAG--------CCTACTGTGAGGAGATACCATTTGC-----------TTTGATGAGTGATTTCTAGCA-TCTAATTTAAAAACACTGACTTTGCAGTTTGATAAGTATTCAAATAGAGTA--GCTTTTCTTTTAAGTATGGATGTCATGGATTTCTGAGGAGTGTCTAGAAATACC
s HiC_scaffold_1 95087931 1735 + 233722169 ATGAAGATTTACTGATTCTCTCATGCCAGTTGTCATGGCAAGCATGAGGAAGAGGTTGGAGACTTGGGATGGGACTGCTGGGCTCGGTCACTTCCGCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCTGGTAAGCATCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGTGG-GAAGATAAGCACAGACTG-CAGAGGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAACCTGGAGGGCAGCAGGAGGCAGGGCATGGGGACAGGGGGCAGGGAAGCTCTGTGGG------------------ATGCTTGAGTCCTTGCTGTCAGCGC--CCCCTAGCTCCTTCC---TGAGAGACACACAGGGGCCCAGAGAGCTCTGCA-GGAGCTACTCTCCAAAGCTGGGAATTCACTtcact-atttctgtgaatacagaGGACTCCAAGTCCAGTTAGAGCAGTCACCTGCTCTTCC-------ACAGTAAAGTGGAAGGAAATGTATT----------------------------------------------------TCCATTCA--------------------------------------------ATTTAAAGGGAcacacattttcctttt-------------------tcctggctAGTCAGGAAACAGCTAGAGTTGGGGGCAAGGATGTTATAAGATCATCCCAG--AGACACCATTGGCCTAAAACTTTTTCA-ATTA-GCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCTCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctCTGCTACCTGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCATAGCTCTGGGGGCTGCTGCTGACCTGGATCCAGATGCTGTGAGAAGAGATTTCAGAGGCTACAAGAATCCCCGGAGCCGAGGAACCGCTTCATCTTTATGCATCTTTCCAATGTGTCCTGCCCTGTCTGTTTCAGGTACTGTTGGGGGTTCTCACCCACTGTTCTGAACTACCTG-TGCCAACAGCCTCTTCCTTTCTAGTGTAAGCATCTCACAGTTCCACTGAGAATTGTACATTTCCCTGTGCCTCACtgtgtaaaaaattaaaagctcatT--GCTGCCTTACCATTGGTGTCTTGACTGA-CTCTCCCTACGTCACGGGACTGGGTCTTTCCCctgcccctca-----------------gatccagtgctgcCACAAGGAAGCTACAGAATCATAGCtctagacaagaaaaaaaatcagaaacctgTTAGTTCTTTTCCTGCTGAATTTG--CAAAGTGTCGGGGACAGGAGAGGGATTGGACTGTG-----TCAGAATGAATGGCTTTTCCAAGGAAATGTGGCCTGCGTGTTCATCTCAGAGTGGACTCTGCAGGTTCCTGTCCTTACTCTTTGACATTATTGATTACTTTTGATATCTTTTGATGAGCTGTTTCTAGCATTCCAATTAAGAAAGAGTGAATTTGTATTCTTCCAAA-AACCAGGTAGAACAAGACATTCTTTTCAACTAGGAAT---CTGGATTTCCAGGGACTATTTGGAAATACC

a score=28110
s chr3           92957933 1026 + 160039680 TGCTGTTTATTTCATAGAGATCTTGGCTTAGGAAGCAGATAGGTCAGGGAAAGCATGTGTTTGACAGTCTAAGTCAGTAGACATTCACCAGAAGCTTCTCCCTATCA-CGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAAC-AGCATTCCAGGGGTCATGAAAAGCCCAACTAGTCTTGTTTTGTCTGATCCTGGAGAACCTTCTCTGCCTGTCTGAT-----------GCTCACT------GACATTGTTCCCATCTTTCCTGTGGAATGCATG--TGCCCATCCTTGCTTTTGACTAG-AATAAAGATT--CTATCCCCACTACACTGGTGTGCCACTGTCATTTTTCCCTATCCCTCCACAGGTTGCAGGTATGTGTTCTTCCCCTCTAACTCACAATTACAGCACT-CCAT------------GATCCACAGCGTAAAAAAAAAAAAAATCAATCATAGCTCTATACAGGAAAAGTTTAGGGGTCTGTCAGACATGTTAATGGTCACTTTGGTTTAAGCAGCAGGGGAGGAAATGGGCAGGACTGGGGTCTCTAACAAGGAATGGTATGTCCTATGACATGTGGAGTGTAT-----TTCATCTCACAGTAGAAATGTA-AGCCTACTGTGAGGAG------ATAC--------------------CATTTG-----CTTTGATGAGTGATTTCTAGCATCTAATTTAA-AAACACTGACTTTGCAGTTTGATAAGTATT---CAAATAGAGTAGCTT
s HiC_scaffold_1 95282056 1053 + 233722169 TACCGTCTCCTTTTCACAGATATTGGCTTACAAAGCAGGTTGGATGAAGGAAGGACAT--TTAACAAACTGAATGAA-AGACACTGTTATGAAGTTTCTGGgtttaaatatttgcattttatt--tcaaggtAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCTGCCCCCTCCCAAGTGCCC------------CGCCCCCAAATGCCCCCAGAAGAGCCCAGCACAGTATCTACCTGCTGctccttcctgctctgctcccagcTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTCTGGAGATCAGACTCCTGTGATGGCGACAGTGGTCTGCAGTCTGGAGACTTTGGCTGTGGCCACAGCTCTGGGGGCTGCTGTTGACCTGAAATCTGATGCTGAGACAAAAGATTTCAGAGGTTACAAGAATCCCAAGAACCACGGAA---CAGTTTCATCTTGATGCATCTT-TCCAATATGTGCTGCCCTGGCTGT-TGATTTTTCCCAGTAGCTCTTTCTGTCAAAAATATCTCACACTATTGCTGAGGATTGTATACTTCACTGTGCCTCACTCtgtcaagaaataaaaacttgcTATTTCTTTACCACTGACATCTTATGGTCATTTCACCTTGACTCTCCCCAGGTGGCTGGTCTGTGCCCTTGTCCTCTGCCTCTCAGATCTGCTGCTGCCACAAAGATGGTGCGGAGTCATTgctctagaaaaacaaaaa--------------aaacaaaaaaacccctggAGTCCGT----TCTTTTCATGGTGAATTTG--TGAGGCAGCAAGGGAG---------AGGACTATGGCCTCTGAGGAAGGAAG------CCTTTTCCAAGCAAAGTGCATGGCTGTTCATCTCATAG--GAACTGCGCAGGCTCCTCTGATGGTTTTTGcatacttttttgaaattattgcttacatttgatattttttgaTAAGCCGTTACTGGCATTTAATTTAAGAAACAGTGAATTTGTAGTCT-ATAGTTATCTAGCAACTATAGTAGTTT

a score=18323
s chr3           92958014 475 + 160039680 CATTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCAT-TCCAGGGGTCATGAAAAGCCC---AACTAGTCTTGTTTTGTCTGATCCTGGAGAACCTTCTCTGCCTGTCT
s HiC_scaffold_1 95247500 448 + 233722169 CACTGGCTGTAAGTTTCTCTCTG---AGCTTTTTCCTTGCTCTCTCCAGGTTCCCACACTGCACTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcc---tcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCATCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAG-GGTCTGCAGTCT-GGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACATAGA----------GAGAT------TTCTGAAGAAAGCAGAGTCTCCAATGACCAAGAGAAAGCCTCAAGCTGGCACTCCTT-------TCCCAGGGATCCTTGGCTGTCTTTCT

a score=20233
s chr3           92958024 391 + 160039680 AAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGT--CCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAA
s HiC_scaffold_1 95108170 386 + 233722169 AAGTTTCTCTCTGAGATTTTTC---CTTGCTCTCTCCAGGTTCCCTGACCGCACTGAGATGTCCTGCCAGAAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGTCC------------CTCCCCCAAATGGCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGG-CTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGTAGTCTGGGTGCTCTGGCTGTGGCCACAGCTCTGGGGGATGCTGCTGATCTAGATC-TGATGTTCAGATGAGAGATTTCTGAGCAAA

a score=13471
s chr3           92958041 340 + 160039680 GTTTCTATCCTACTCTTCTAGGTCC----AGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCA------------CAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT------------------------------------------------------------CAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGG
s HiC_scaffold_1 95421606 406 + 233722169 gtttctatttt-ttcatctagGATCTCTTAACTCTTGCCAAAATGTCCTGCCAGCAGAACCAGAAGCAGTGCCAGCCTCCTCCCAAGTG---TTCCCCTAAGTGCTCCCCTAAGTGTCCCCCTAAGAGTACCTCCAAGTGCTCAGCCTCATGCCTTCCTCCAGTCTCTACCTGCTGTAGCTCCAGTTCAGGGGACTGCTGT------AGCTCTGGAAGTGGGGGCTGCTGCCTGAGCCACCACAGGCCCCACCGATCTCTTCGTCACAGACACCAGAGCTCTGGCTGCTGCAATAGTGGCAGTGGTGGTGCCTGTACCTGTGGCAGTCACTGTACCTGCAGTAGTGATTGCAACTGCCGCAATAGACAGCAGTCTGGTGGCTCTGGCTGTT------GCTCTGGAGGCTACTGATGGCCGGG

a score=11879
s chr3           92958063 325 + 160039680 TCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAGGGA---------------------------------------GGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCT---------------------------------------------------------------------------------GTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA
s HiC_scaffold_1 94993091 433 + 233722169 TTCATTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCTAAGTGCA---CCCCCAAATGCCCACCCAAGTCCCCC------------------TGCCCACCTCCAGCGTCTTCCTGCTGTAGCCTGGGCTCTAGCAGCTGCTGTGGCTCCAGCTCTGGAGGCTGCTGCAGCTCGGGTGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAAGCCCCGCCGATCTCTTCTACGCAGACACCGACACCAGAGCTCTGGCTgctgcagcagtggtggcagtaGTGGCTGCTGTGGCAGTAGCAGTAGCTGCTGtagcagcagtggtggcagtggCTGCTgcagcagtggtggtggcagtggccaGCAGTCTGGGGGCTCCAGTTGGTGTCACACCTCAGGGAGCGGCTGCTGACCTGGGCCACAA

a score=11625
s chr3           92958070 306 + 160039680 CCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCC------------TCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGC---CTGCAGCCT--CTTC------CTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCC------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCT---------------GTGGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95541464 345 + 233722169 CCTACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAATGCCCTCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCCCCTAAG-----GCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGTTGCAGCTCTGGTAGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCGCCGCAGGTCCCACCGCCATAGACACCAGAGCTCTGGCT------------GCTGCagccagccctcgggaggctccAGCTGCTGTGGAGGGGGAAGCAGCCAACAGTCTGGAGGTTGCTGCTAA

a score=10451
s chr3           92958071 397 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGT---------GGCCACAGC------TCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCCAGGGGTCATGAAAAGCCCAACTAGTCTTGTTTTGTCTGATCCTG
s HiC_scaffold_1 95586344 388 + 233722169 CTGTGGAGATGTCCTTCTAGCAGAACCGGCCACAGTGCCAGCCCCCTCCCAAGTGCA---CCCCCAAGTATCCT--------ACCTCTAAAGGCCCCAAAGTAGTGTCCCCCTAAGTGGCTCCCAGTCTCTTCCTGCTGCAGGGTCAGTTCTGGGGGCTGCTG------CAACTCTGGGGGTAGTGGCTGCTGTCTGAGCCACCACAGGCACTGCTGGTCCCACTGCCACAGACATGAGAGCTCTGGCT------------GCTGCAGCCAGCTG-CTGGGGTCTCCAGCTGCTATAGAGAGGGTGGCAGCCTACAATCTGGAGGCTGCTGTTGAAGTGGACTCTGA-ACTTAAATAAGAAGACTTGAATGAAGCA-------AGTGGTCA-GATAGTTTCTCCTTATCTTCCTTTTCCTGGATCTG

a score=12321
s chr3           92958071 305 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgct---ccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAGGGA---------------------GGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCT---------------GTGGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95576008 328 + 233722169 CTGTGGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCACCTCCCAAATGCA---CCCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCGCCTAAGTGC---CCCCCAGTCTCTTCCTGCTGCAGTGTCAGCTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGTCTGAGCCACCACAGGCGCCAGAGGTCCCACCACCACAGACACCAGAGCTC---------TGGCTGTTGCA---GCCAGCCCTCGAGGGGCTCCAGCTGCTGTGGAGGGGGGAGTAGCCAGCAATCT-GGGGCTGTTGCTGA

a score=11612
s chr3           92958071 341 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgcc---ccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACA-TGATGCTGAGACAAG---GCAGTCTGGAGG
s HiC_scaffold_1 95524247 394 + 233722169 CCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGCCCTCCC---AAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG--CTGCAGCAGTGGCGGTGGTAGTGGCCAGCAGTCTGGGGG

a score=5356
s chr3           92958074 310 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAG---CCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAAC
s HiC_scaffold_1 95609527 289 + 233722169 CCAAGATGTCCTACAAGCAAAACCAGCAGAAGTGCCAGTTCCCTGCCAAATGCC---CCCCAAAATGTCTACTTGATTGCCACCCTCAGTGC---CCACAAGCTCCTTCTTCATGTCCCCCTTCTGGCTCCCCTCCAGCCTCC---TCCTTCTGTGTTTCCACCCGTG-----------TATCTCTGGTATCTTA---CCGGTTTCCACGATTCTATCTGCACCAGCCCCAGTGTTCA-AACTGCTGTGAAAACCTGTCCTCTGGATGTCCTGGCTGCTGCCACAACTCCGGAGGCTGTAACTGACCTGCAAC

a score=11450
s chr3           92958074 325 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCT----------------tccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA-----TGCTGAGACAA
s HiC_scaffold_1 95344267 344 + 233722169 CCAACATGTCCTACCAGCAAAACCAGTAGCAATTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGTTCCAAAGTACCCACCCCAGAGCCCAGCATAATGCACTCCTTGGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGTTCTGGGGGTGGTGGCTGTTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTATTGAGAAAA

a score=13599
s chr3           92958074 311 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAG------------TGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---------------------------GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG------GTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACA
s HiC_scaffold_1 95388587 356 + 233722169 CCAAGATGTCCTGCCAGCAAAACCAGCAGCAGTACCAGCCCCTTCCTAAGTGTCCACCCAGGTGCACCCCAAAGTGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGGTGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGCTGCTGAGCTGGGCCA

a score=8434
s chr3           92958074 314 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTt------------ccccaaagtgctccccaaagtgccccccaaagAGC----------ACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTG-TGCTACAAACTCTGGGGGCTGCAGTGTCCC------------CAGCTCT---GAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCT-CCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA
s HiC_scaffold_1 95193426 343 + 233722169 CTGAGATGTCCTGCCAGTAGTACCAGCAGCAGTGCCAGCCCCATCCCAAGTGGCCTCTAAAGTGTCTTGCCCATAAGTGTTTCCTCAAATGATTCTCAAATGTTTGTTCTCCTAACCGCACCCTGCTGATCTCCAGGCTCTTCCTGCTGTTGCT--CAGCTACTGAGACTGTAGTAGCTCTTGAGGATGATGCAGTTCTTGGGATGGTAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTCCAGTTCCACACCCAGAAGTTGCTGGATCATG----CGTGAGTGTG----ACATCTTGGGGGTTCAGGCTGCTGCCATGGCCCAGGGTGCTCCTTCTGCACTGGGCCTTGA

a score=13129
s chr3           92958075 353 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCCAGGG
s HiC_scaffold_1 95352928 365 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAATGTGCCCACCCCAGTGCCCAGAGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTTGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAATGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTAAGCTGGCCCAGGA---------AGAGCTCTTGAAATGACCCAGCATTCTAGAG

a score=13466
s chr3           92958075 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtcc---------ccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA
s HiC_scaffold_1 95313533 334 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACTCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAATGCCCAGTGCCATGCCCTCCTCTGGTGTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGATGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=11104
s chr3           92958077 335 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgcc---ccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACA-TGATGCTGAGACAAG---GCAGTCTGGAGG
s HiC_scaffold_1 95463630 388 + 233722169 AAATGTCCTGTCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTCCC---AAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG--CTGCAGCAGTGGCGGTGGTAGTGGCCAGCAGTCTGGGGG

a score=11287
s chr3           92961253 752 + 160039680 TCCCAATCCAAATGACTTAGCTCCTTCTATGACCT----AGGTCTGAAGCTTAGAGATA--TGCAAAGTAGTAGACTCAAAATTCATTGAGAAGATGTTGTTTGGATAGTGA-TCTGACATCTGAACTAAGTTGTGCTTTCACCACACAGTAGCCTTGTCTCTCCCGGAACACCCATAGCTTCAGACAGTCATCATCCATGCAGATCAGGATGCAAAGCCA----GGAATACTGGGCTCCTGAACCAGGGTTTTTACTGAGAGTATTAGTCTGCTATTACTATACATGAAATTTTGCTC----TCAGATATGAGTTCTATGTGCATTGTCTGCTCT-CTAGGGA--CCTCTCTCCTCTGTGTTTCATGCATTACTCTC-AGTG----CCTGAGAACAGGCTGCCCTCCCCCCTCTTTGGTAGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCA--TTCCCAACACTGTCATCTCTGACAGGCTACTGACCTCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAATACTGATACCTGTGAACTCTTACCTAAAACTGATTACTCCT--AAGGTGTTCATCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACTGTCTGTCCCGTTACACAGCAAGTTATACAATCAGGACTATGACATATGCATTTGTTGTTAGATGTGTTTATCACCTCATGGGTTAAACATCTACCACAGTAATATGTTATGTAATATCAGTTTGATTTCT
s HiC_scaffold_1 95285672 721 + 233722169 TCCCAGGCTCAGTGACTCAGCGCTTTCTCTGACTTtttcatgaaagaaatttaaaaacacatgaaagGCTTTTGAGCCATGGCTTATC----AGATGTAGGTTAGACTTCCACTCTAACATCAAGGTTGA-CTGTGTTCGCATTACATTGTAGCCTTCCCAATCCTC-AACACCTCTACCTTCGGATAGATATCAACTGAGGAAACAAGGAATCCATTTCACCACGGAGT-----GTTCCTAGAGAGTGTTTTGTGCTGA-------------CCTTTTCTATGC-------TCTGCCCCACCTCAGACTTCTGCTCTATTTACATCCCTTCTTCTGTTAGGGATACCATTGCCTACAGTATTTCATGGGTCCCTCTCCAGTGTCCCCCTGAAG----------CTGCTGCTAATATAAGGAGGTAGGATTTCTCATC----TCCTGTCTCTGCAGCTTCCCAG---TGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAGCATTTCAACACACGAGGT-ACATAGGACTGACACCCAGCAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGCATGATTACTTCATTGTCTACCCTGTTACCCACC--------TGAGCAGGATCATATCATATTCACTTATGATTAAACACCTTTATAGCTTTATGGATTGTGTGTCTACTGCAGTGCTGT-TTCTACAGTGTCTATTAGTtttct

a score=48357
s chr3           92964078 4411 + 160039680 [encoded data, 5036 characters]
s HiC_scaffold_1 95071125 4500 + 233722169 [encoded data, 5036 characters]

a score=31625
s chr3           92966887 1381 + 160039680 AGAGAGCCATCAAAATTTCCTGGTTCTCTACTG---------ATGGTAATTGT-AGTAGGAGCACAGAAATATGAATGGATGATCCTG----GCTCTGTCAACTCC-CTTGTTGTGAAAGCATCAGCATGCTTGGGCTGTGCATCACACACCTGCCA-AGGATAAAAGGGCTGCTGCCCTGGATCATTCAGCCACAGCTTCTTCA-TCACAGTATTCTCC-------TGCTTTTGCAGTATCTGGTGAGTACCTAACTAGGGACAGGGCCTCCGCTAAGAAGGTGTTGAGATGACAAGC-TAGA-TGTGACTGGGATGAAAGAAGCAGGGGTGTCTAGTATGGAGAGAATAGGAAG-AGCACCTGCCAGGGGGCAAGAAGACAGGGAGAACACAGACAGGAGCCTCTCTAGGTATATCAGGATCTGTGACACACCAGAGTCCTAGCTCTCAGCACTGCCTC-CACTCTGCTGAGAGGTTTGCATCACCCCAGAGGATTCTCAAAGGGTCATTTTCCCATTACCTGTATTTGCTACAGTTCATCAGAGAGCTACTTAGAAGTATCCACGTCTGCTTAATCCGGGTAAAAATGGAAGATAGTGTTGCAGGCAGAGAGATCAGCAACCCTTTGCCTTTGTAAAGCTCCTTGGTCTGATTGTATTTACTAGGGATGCATGCTGATCTATCTGATAGTCTTGAGAATGCTGTGCTCACATAGATGTATACTTCCACGTTGATGTTTATTTCATAGAGATCTTGGCT---TTGAAAGCAGATCAGCAATAGGAGGCAGGCATTTGACAGACTAAGTCAGTAGACAC---TCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGAA-------------------------AATTCAGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCTATCCAGAGTTTCAACTTCCCT-----AGTAACTTCTCTTCCTGTCTGTTGTCTGGGACCCCACAGTCCTCATTCCCTGGTAGCTTAGGACTTCATATGT-CCTATACATATCCATTTCAAAAAT--AAAGCT
s HiC_scaffold_1 95087923 1309 + 233722169 AGTAATCAATGAAGATTTACTGATTCTCTCATGCCAGTTGTCATGGCAAGCATGAGGAAGAGGTTGGAGACTTG---GGATGGGACTGCTGGGCTCGGTCACTTCCGCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCTGGTAAGCATCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGT-GGGAAGATAAGCACAGACTGCAGAGGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAACCTG---GAGGGCAGCAGGAGGCAGGGCATGGGGACAGGGGGC-----AGGGA-----AGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCCAAAGCTGGGAATTCACTtcactatttctgtga---atacagaGGACTCCAAGTC----------------------------------CAGTTAGAGCAGTCACCTGCTCTT--CCACAGTAAAG----TGGAAGGAAATGTATTT-------------------CCATTCAAT-------------------TTAAAGGGAcacacattttcctttt-------------------tcctggctAGTCAGGAAACAGCTAG--AGTTGGGGGCAAGGATGTTATAAGATCATCCCAGAGACACCATTGGCCTAAAACTTTTTCA-ATTA-GCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCTCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctCTGCTACCTGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCATAGCTCTGGGGGCTGCTGCTGACCTGGATCCAGATGCTGTGAGAAGAGATTTCAGAGGCTACAAGAATCCCCGGAGCCGAGGAACCGCTTCATCTTTATGCATCTTTCCAATGTGTCCTGCCCTGTCTGTTTC---AGGTACTGTTGGGGGTTCTCACCCACTGTTCTGAACTACCTGTGCCAACAGC--CTCTTCCTTTCTAGTGTA-AGCATCTCACAGTTCC------------ACTGAGAATTGTACATTTCCCTGTGCCTCACtgtgtaaaaaattaaaagct

a score=24534
s chr3           92967596 588 + 160039680 GTTTATTTCATAGAGATCTTGGCTTTGAAAGCAGATCAGCAATAGGAGGCAGGCATTTGACAGACTAAGTCAGTAGACACTCACCAGAAGCTTCTCCCTATCA-CGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGAAAATTCAGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCTATCCAGAGT-TTCAACTTCCCTAGTAACTTCTCTTCCTGTC
s HiC_scaffold_1 95282060 567 + 233722169 GTCTCCTTTTCACAGATATTGGCTTACAAAGCAGGTTGGATGAAGGAAG--GACATTTAACAAACTGAATGAA-AGACACTGTTATGAAGTTTCTGGgtttaaatatttgcattttatt--tcaaggtAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCTGCCCCCTCCCAAGTGCCC------------CGCCCCCAAATGCCCCCAGAAGAGCCCAGCACAGTATCTACCTGCTGctccttcctgctctgctcccagcTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTCTGGAGATCAGACTCCTGTGATGGCGACAGTGGTCTGCAGTCTGGAGACTTTGGCTGTGGCCACAGCTCTGGGGGCTGCTGTTGACCTGAAATCTGATGCTGAGACAAAAGATTTCAGAGGTTACAAGAATCCCAAGAACCACGGAA----CAG--------TTTCATCTTGATGCATCTTTCCAATATGTGCTGCCCTGGCTGTTGATTTTTCCCAGTAG---CTCTTTCTGTC

a score=5757
s chr3           92967628 516 + 160039680 AGATCAGCAATAGGAGGCAGGCATTTGACAGACTAAGTC----AGTAGACACTCAC----CAGAAGCTTCTCC-CTATCACGTTTCTATCCTACTCTTCTAGGTCC--AGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaa-agAGCACAACACAGTGTCTGCC-TGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGG------CTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGA--AAATTCAGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCT
s HiC_scaffold_1 95080574 459 + 233722169 AGTTCAGAAGTAGAAAATGGCTTCTTAAAGAAATCCGTCTGAGAAGAGACACTCACTGACCAGAGGCTTCTGCGTTATCAAGCTTGTCTGATTCTCTCTGAAGTCTCTGACCTCTACAGGGATTCCCTGCCAGCAAAACCAGCAGCAAT------------------------------AGTGGTACACAA---GTATCTCAATAAAACCTACCTCAGTATCCACCACACATTCATTCCC------------AGCTCCAGGGACCACAG------CAGCT-GGGGGCAGGTGATAACTGCTACTTGAG---------------GGTCCATCTTTTCAG----AGCATCCCAGAGTCCTG--GCGGATGTAGTTGTGAGCTACCTGGG--CTCCAGGTGCTGCCATGGCTCTGGAGACTGCTGTTGATCTGGCCAGTGAGATTGAGATGAGCAGTTTTAGAG-AAATCAGAAACTCAAAACCCAAGGATTAACCTCGTTCTGAAGTATCC--TCCCAGCTTCCCTACTGGTTTATCCT

a score=18633
s chr3           92967673 469 + 160039680 CACTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCT-CAGGAGCCAAGGAAAA--TTCAGCCCGTCTTTTCCATTCCCAGGGGCCCT--GCTGACTTCTT
s HiC_scaffold_1 95247500 448 + 233722169 CACTGGCTGTAAGTTTCTCTCTG---AGCTTTTTCCTTGCTCTCTCCAGGTTCCCACACTGCACTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcc---tcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCATCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAG-GGTCTGCAGTCT-GGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACATAG-----------------AGAGATTTCTGAAGAAAGCAGAGTCTCCAATGACCAAGAGAAAGCCTCAAGCTGGC-ACTCCTTTCCCAGGGATCCTTGGCTGTCTTTCT

a score=20540
s chr3           92967674 420 + 160039680 ACTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGT--CCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGG--GCTGCAGTCTC---CCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCT-CAGGAGCCAAG
s HiC_scaffold_1 95108161 416 + 233722169 ACTGGCTGTAAGTTTCTCTCTGAGATTTTTC---CTTGCTCTCTCCAGGTTCCCTGACCGCACTGAGATGTCCTGCCAGAAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGTCC------------CTCCCCCAAATGGCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGTAGTCTGGGTGCTCTGGCTGTGGCCACAGCTCTGGGGGATGCTGCTGATCTAGATCT-GATGTTCAGATGAGAGATTTCTGAGCAAAGAAAAGTCTGCAATGACCAAG

a score=13340
s chr3           92967700 340 + 160039680 GTTTCTATCCTACTCTTCTAGGTCC----AGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCA------------CAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT------------------------------------------------------------CAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGG
s HiC_scaffold_1 95421606 406 + 233722169 gtttctatttt-ttcatctagGATCTCTTAACTCTTGCCAAAATGTCCTGCCAGCAGAACCAGAAGCAGTGCCAGCCTCCTCCCAAGTG---TTCCCCTAAGTGCTCCCCTAAGTGTCCCCCTAAGAGTACCTCCAAGTGCTCAGCCTCATGCCTTCCTCCAGTCTCTACCTGCTGTAGCTCCAGTTCAGGGGACTGCTGT------AGCTCTGGAAGTGGGGGCTGCTGCCTGAGCCACCACAGGCCCCACCGATCTCTTCGTCACAGACACCAGAGCTCTGGCTGCTGCAATAGTGGCAGTGGTGGTGCCTGTACCTGTGGCAGTCACTGTACCTGCAGTAGTGATTGCAACTGCCGCAATAGACAGCAGTCTGGTGGCTCTGGCTG------TTGCTCTGGAGGCTACTGATGGCCGGG

a score=11712
s chr3           92967722 332 + 160039680 TCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAAC-ACAGTGTCTGCCTGC---AGCCTCTTC--------CTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCC------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCT---------------------------------------------------------------------------------GTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAG
s HiC_scaffold_1 94993091 440 + 233722169 TTCATTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCTAAGTGCA---CCCCCAAATGCCCACCCAAGTCCCCCT------GCCCACCTCCAGCGTCTTCCTGCTGTAGCCTGGGCTCTAGCAGCTGCTGTGGCTCCAGCTCTGGAGGCTGCTGCAGCTCGGGTGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAAGCCCCGCCGATCTCTTCTACGCAGACACCGACACCAGAGCTCTGGCTgctgcagcagtggtggcagtaGTGGCTGCTGTGGCAGTAGCAGTAGCTGCTGtagcagcagtggtggcagtggCTGCTgcagcagtggtggtggcagtggccaGCAGTCTGGGGGCTCCAGTTGGTGTCACACCTCAGGGAGCGGCTGCTGACCTGGGCCACAAGGAGCAG

a score=11867
s chr3           92967729 306 + 160039680 CCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCC------------TCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGC---CTGCAGCCT--CTTC------CTGCTGTGCTACAAGCTCTGGGGGCT------------GCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCT---------------GCAGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95541464 345 + 233722169 CCTACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAATGCCCTCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCCCCTAAG-----GCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGTTGCAGCTCTGGTAGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCGCCGCAGGTCCCACCGCCATAGACACCAGAGCTCTGGCT------------GCTGCagccagccctcgggaggctccAGCTGCTGTGGAGGGGGAAGCAGCCAACAGTCTGGAGGTTGCTGCTAA

a score=10313
s chr3           92967730 317 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACC-GTGGCAGTGGTCAGCAG----TCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGA
s HiC_scaffold_1 95586344 317 + 233722169 CTGTGGAGATGTCCTTCTAGCAGAACCGGCCACAGTGCCAGCCCCCTCCCAAGTGCA---CCCCCAAGTATCCT--------ACCTCTAAAGGCCCCAAAGTAGTGTCCCCCTAAGTGGCTCCCAGTCTCTTCCTGCTGCAGGGTCAGTTCTGGGGGCTGCTG------CAACTCTGGGGGTAGTGGCTGCTGTCTGAGCCACCACAGGCACTGCTGGTCCCACTGCCACAGACATGAGAGCTCTGGCTGCTGCAGCCAGCTGCTGGGGTCTCCAGCTGCTATAGAGA---GGGTGGCAGCCTACAATCTGGAGGCTGCTGTTGAAGTGGACTCTGA

a score=12456
s chr3           92967730 314 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgct---ccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGA---------------------GGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGC---------------AGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCC
s HiC_scaffold_1 95576008 337 + 233722169 CTGTGGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCACCTCCCAAATGCA---CCCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCGCCTAAGTGC---CCCCCAGTCTCTTCCTGCTGCAGTGTCAGCTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGTCTGAGCCACCACAGGCGCCAGAGGTCCCACCACCACAGACACCAGAGCTC---------TGGCTGTTGCA---GCCAGCCCTCGAGGGGCTCCAGCTGCTGTGGAGGGGGGAGTAGCCAGCAATCT-GGGGCTGTTGCTGAAGGGGATCC

a score=11621
s chr3           92967730 304 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgcc---ccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTG
s HiC_scaffold_1 95524247 355 + 233722169 CCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGCCCTCCC---AAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG

a score=5696
s chr3           92967733 335 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG------CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAG
s HiC_scaffold_1 95609527 312 + 233722169 CCAAGATGTCCTACAAGCAAAACCAGCAGAAGTGCCAGTTCCCTGCCAAATGCC---CCCCAAAATGTCTACTTGATTGCCACC------------CTCAGTGCCCACAAGCTCCTTCTTCATGTCCCCCTTCTGGCTCC----CCTCCAGCCTCCTCC-TTCTG-----TGTTTCCACCCGTG-TATCTCTGGTATCTTACCGGTTTCCACGATTCTATCTGCACCAGCCCCAGTGTTCA-AACTGCTGTGAAAACCTGTCCTCTGGATGTCCTGGCTGCTGCCACAACTCCGGAGGCTGTAACTGACCTGCAACTTTTG--GGACACAAAGAATCATAG

a score=11855
s chr3           92967733 337 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCT----------------tccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCG-----GAGACAAGGAAT--TTCAGAG
s HiC_scaffold_1 95344267 358 + 233722169 CCAACATGTCCTACCAGCAAAACCAGTAGCAATTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGTTCCAAAGTACCCACCCCAGAGCCCAGCATAATGCACTCCTTGGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGTTCTGGGGGTGGTGGCTGTTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTATTGAGAAAATGGATGATCCAGAG

a score=13534
s chr3           92967733 314 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAG------------TGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------------GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG------GTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGA
s HiC_scaffold_1 95388587 359 + 233722169 CCAAGATGTCCTGCCAGCAAAACCAGCAGCAGTACCAGCCCCTTCCTAAGTGTCCACCCAGGTGCACCCCAAAGTGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGGTGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGCTGCTGAGCTGGGCCAGAA

a score=8937
s chr3           92967733 415 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTt------------ccccaaagtgctccccaaagtgccccccaaagAGC----------ACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTG-TGCTACAAGCTCTGGGGGCTGCAGTCTCCC------------CAGCTCT---GAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCT-CCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGAAAATTCAGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCTATCC
s HiC_scaffold_1 95193426 416 + 233722169 CTGAGATGTCCTGCCAGTAGTACCAGCAGCAGTGCCAGCCCCATCCCAAGTGGCCTCTAAAGTGTCTTGCCCATAAGTGTTTCCTCAAATGATTCTCAAATGTTTGTTCTCCTAACCGCACCCTGCTGATCTCCAGGCTCTTCCTGCTGTTGCT--CAGCTACTGAGACTGTAGTAGCTCTTGAGGATGATGCAGTTCTTGGGATGGTAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTCCAGTTCCACACCCAGAAGTTGCTGGATCATG----CGTGAGTGTG----ACATCTTGGGGGTTCAGGCTGCTGCCATGGCCCAGGGTGCTCCTTCTGCACTGGGCCTTG-----------AGGACCTCTAAAGAGCAAA--------------TAAGGAAGAACCAAATAGTTTTGTGTCTACCCCAG---CCTGATGCCTTCTTTAACCC

a score=12806
s chr3           92967734 315 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG
s HiC_scaffold_1 95352928 336 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAATGTGCCCACCCCAGTGCCCAGAGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTTGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAATGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTAAGCTGGCCCAGGAAG

a score=13271
s chr3           92967734 315 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtcc---------ccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG
s HiC_scaffold_1 95313533 336 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACTCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAATGCCCAGTGCCATGCCCTCCTCTGGTGTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGATGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGAAG

a score=11113
s chr3           92967736 298 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgcc---ccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTG
s HiC_scaffold_1 95463630 349 + 233722169 AAATGTCCTGTCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTCCC---AAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTG

a score=15381
s chr3           92985218 768 + 160039680 TCTCTCAA--CCACTCTGCAGTTATCAACCCCACAATGAATGAACCTGAGTCAAGTTGAGACCTCCTAGAGATAAGACCTTCCTGAAAG------TGTATCCCTTAAGCACTGGCAATTAAC-----AAGTGGCATGCCTACCT-TAGAT-CTGAATGGATGGTAGATGCCTCTAGTGTGTCAACTCTTCTCCACTTATTCAGGGAAAATAATA--TCTTAAATAACAATGTAAATAAAATAATTTTAGTGAGAAATTGAAGGAAGATGGAGTAGGTATTAAAGCCAAAGGAC--ACTGACGAAGACATCTGCTTCCCAGAAG----TTTCCTTTTCCTTCTTCCCCATGCACTACAGGTGAGCAGCACACAGACATTCTTATCCTTCCACACCTAAATTCCTCTCCTCTTCTCTT---ACCTCTAAGATGCTCCCATCCTTAGAAGATTTGATTTCTTCTCTGACTTCCAAGAATTCATTATGTGCTCCCTCAACCCTTCCAGTAACATCCCAGTTTCCACTTTTAAGTAACTTTGTAGCACCTTCGTAAGGTCATTATAAAATCACTTTTCACAAACTACTTCTGGATGTCCTCTGTGGCCTAAAATCATAGAACTTACTGTTCTGAACTGATA----CTGAAGAAAGCAGATATGCTACAAGATG-CTCACTTG-ATATGATGATTGTTTTAGAGCCTT------------TTAAATGCCCTTTGTTCAGTACAGTGAAATAAAAGGCGAGTGTCTTTGTT-------TTACT-------CTGTTTTGTATCCCTT-----------TGCTATGTTGACTGAAGTATAGTATCT
s HiC_scaffold_1 95082395 811 + 233722169 TCTTTCAATGCCACACTGTAACTGCTTATCCCATAATGA-TGACCCTGGATGCACTC-AGGCCCTCTGGAGGTGATACCTTCCTCAAAGCCATAGTGTATTTCTGAAACACTGAATATCAGTCACTAAAGTGACCCACCTGCCCATATACACAGCACAGATCTTTTGTATGTTTAATGTGTCAACACCTCTCTTCACATGCAGGCTAGACAGgaagttttaagaaaatatg-atacataaGAATTACAGGTCAGAATTGGATAAAGGGATAGAAAGTGTTGAAACCAATAACTTGGCTGAT--AGTTTACTGCCTCCCAGAGAGTTTTTTGTTTTCCCGTCTTTCCTGTGGTTTACAGGTGAGTAGCACAGAAATATTCCCGCCATTCTACACTCACCTTCCCCTCCTCTGCCTTTTGAACTTCTAAGTTGCTCCTATGCCTGGA------GACTCCCACCCTGACCTTCATGACCTTGTCATG---TCTCTGA---CTCACAGGAACTTCTCAGTTCCTACTTCCCAGCCACCATG---------CATTATGACACTTTCACTCGACTTTTCTGAATCTGCTCTAGCCTGTCCTTTGTGACACGGAGTCATGGAATACACTGACTTGAACTAATACTAGCTAGAAAAGGCAGAAATTCTACAAAATGTCCCTCTTGTAAAAAAAGATCTGCTTAGAGTCGTTTAGCCCATGCATTAAATGTTCCAAACTCAGTGTGATAAAACAAGAGCcaattgctgttgttgttgttgttgctgttgctgttgtttccTAGTCATTGTTTTCTCCACTGTTATATTGACTGAAAGCCAGTATTT

a score=33433
s chr3           92991524 1747 + 160039680 ACTCCCCTATCATCAACCTAGTCATTAGCAGCACATCAATCAGTCATTACAACTC--ATCAATCATGCTCCAAAATAATTTTATCATTTTATACTC-AATACCAAATACTCCACAGAAAGGTAAATATGGATAAAATC--CTTTACCACATTACACTGAGGTATTGTACTATTAATAAT-ATAGGACCTT-CACAACATTGCCT-CTCATCCATAA---CCTACCAAAATGTTAGTTCTGCCTCCCACAGGACTTCGACCCATCCTCAG----------------TCCGTTAGCTAATGCATTCCACTTAAAGGGCTGAGTGATC--AGAGGACTCAACACCCTTGAGAATCAGGAGCAAATCACATCTGACA-----TTTTTCTCTGA-----------------------TTTAAAAAAAAAAAAAC------------------------------------------------TTACA--CAATATTGAAATGGTCAGAGGCAGAAAATGTATTCTATGCATTGCTATATTCACACTTCCCAGCA--AAAATACAAGGAACAGGCAGGTTAAAGTATAAGAGCTGA---------ATGAATAAAAGAAGGAATAGCAGATCTCTGGTACATTTGAGAAGCAGT-GACAGAGATTGCTTAATTCTTCCTTGTCAGAAATCTTGG-AAACATGAGGAAGATGCTGGGAGCATTGGGTG-------------CTGCCACCTCCTCTGT-TGTGAAAGCAGCAGCATGCTTGAGCTGTGCATCACACACCTGACA-AGGATAAAAGGGCTGCTGCTCTGGAACATGCAGCCACAGCCTCTTCAAC-ACAGCCTTCTTC----TCCTACCTTTGCAGAACCTGGTGAGTACCTAACTAGGGATAGGAACTCATCTTAGAGGGTGTAGAGATGACAAGCTGGACATGGCCAAGGTGAAA---GAAGCAT-GGTGTCCAGTGTGAAGGCAGCAGAAAGTGGA-CCTGCCAGGGGCCAAGAGACAG----TGAGGAAAATAGACAGGAGTCTCTGTGTGTACATCAAGGTTTGTGACACACCAGAGTCCTGGCTCTCAAGATTGCCTCTATTCT-ACTGAGAGGTTTGCATCAGCCCAGAGGATTCTCCAAGAGTCATTTCCCCATGACCTGTATTTGCTACATTTTA---------GCAGAGAGCTAC--------TTAGAAGTATCAT-TACCTTCTGAAAGCAGGGCTAAAAGAAGAGAATGTCTTGCAGGTCATGGAGCTCAGTTACCCTTTGCCTTTGTAAACCTCGTTGTTCTGAGTGCACTTACTGGGGATACGTGCTGAACTTTAT----GATAGTCTTGAGAATGCTGTATTCAGATGGATTTGTGCCTTCATGGTCCTATTTATTTGCAGATAAGTCAAGGAAGTCATGTGTTTGACAGACTAAGTCAGTAGACAC--TCAAC--AGAAGCTTCTCCCTATGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGAC---AGTGCAATTGGGAAAG-----AAACACTATCAAAAAC----GAGTCTATAAACCTC-AAATGTTCAGTCCTCTTTCCCAG-----TTTCTCTGTCTTCTTTAAGTGCTG
s HiC_scaffold_1 95087319 1784 + 233722169 ATCCACATATCACCACCTt---cataaacaacaaaataaatcacctTCACGACTCCCGTCAATT---CTCTTAAATA---------CTCCATGCTCCAATATCATAAATCTTTCAGGAGGATAAATATGGACAAATTGAGCTTTTTCATATTAAGCATGAttcttgtaatctcagctctcatAGGTTCTTTCACAATTTTTTCTACTCATACACATAATCCTAGTTCGATTTTAGTTCT------CTGAGGGTCTCCACCCA-CCTCAGATAAGGCATGATTCCATCCATTACCTATTACATTC-ATCCCTGGGGCTCAGTGGTCTCAGATCACCCAACATCCTCAAGAGTTAGTATCTGACTAGATTTAAAAATCTCGTTCTCTTTGAGAACCTGCATAGCAATAGATGTATTTGGAGACAGTAATATCACAGGTGAATCACTCAGCATCAGAcatatatgtttatttctttgttattacaGTCAAACTTGAAATACTCAA--GCAGGAAATGTGTCACATCCATCTCTATATT-ACATTGCCCCTCCCTAAAAGACA---------CTGTTTAAATTATCTCATCTGAGAAGtttacatgaa--aagaaagaaatgtcagaTTTTCATCATATCTGGAAAGTAATCAATGAAGATTTACTGATTCTCTCATGCCAGTTGTCATGGCAAGCATGAGGAAGAGGTTGGAGACTTGGGATGGGACTGCTGGGCTCGGTCACTTCCGCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCTGGTAAGCATCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGTGG-GAAGATAAGC-ACAGACTGCAGAGGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAACCTGGAGGGCAGCAGGAGGCAGGGCATGGGGACAGGGGGCAGGG-----------------AAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCCAAAGCTGGGAATTCACTtcactatttctgtgaatacagaGGACTCCAAGTCCAGTTAGAGCAGTCACCTGCTCTTCCACAGTAAAGT----GGAAGGAAATGTATTTC----CAT-----TCAATT--------------TAAA--------------------------GGGAcacacattttcctttttcctggctAGTCAGGAAA----------CAGCTAGAGTTGGG-----------------------------GGCAAGGATGTTATA--------AGATCATCCCAG-AGACACCATTGGCCTAAAACTTTTTCAATTAGCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCTCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctCTGCTACCTGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCATAGCTCTGGGGGCTGCTGCTGACCTGGATCCAGATGCTGTGAGAAGAGATTTCAGAGGCTACAAGAATCCCCGGAGCCGAGGAACCGCTTCATCTTTATGCATCTTTCCAATGTGTCCTGCCCTGTCTGTTTCAGGTACTG

a score=27909
s chr3           92991972 1204 + 160039680 CAAGGAACAGGCAGGTTAAAGTATAAGAGCTGAATGAATAAAAGAAGGAAT----AGCAGATCTCTGGTACATTTGAGAAGCAGTGACAGAGATTGCTTAATTCTTCCTTGTCAGA-AATCTTGGAAACATG-AGGAAGATGCTGGGAGCATTGGGT-------------GCTGCCACCTCCTCTGT-TGTGAAAGCAGCAGCATGCTTGAGCTGTGCATCACACACCTGACA-AGGATAAAAGGGCTGCTGCTCTGGAACATGCAGCCACAGCCTCTTCAAC-ACAGCCTTCTTC----TCCTACCTTTGCAGAACCTGGTGAGTACCTAACTAGGGATAGGAACTCATCTTAGAGGGTGTAGAGATGACAAGCTGGACATGGCCAAGGTGAAA---GAAGCAT-GGTGTCCAGTGTGAAGGCAGCAGAAAGTGGA-CCTGCCAGGGGCCAAGAGACAG----TGAGGAAAATAGACAGGAGTCTCTGTGTGTACATCAAGGTTTGTGACACACCAGAGTCCTGGCTCTCAAGATTGCCTCTATTCT-ACTGAGAGGTTTGCATCAGCCCAGAGGATTCTCCAAGAGTCATTTCCCCATGACCTGTATTTGCTACATTTTA---------GCAGAGAGCTAC--------TTAGAAGTATCAT-TACCTTCTGAAAGCAGGGCTAAAAGAAGAGAATGTCTTGCAGGTCATGGAGCTCAGTTACCCTTTGCCTTTGTAAACCTCGTTGTTCTGAGTGCACTTACTGGGGATACGTGCTGAACTTTATGATAGTCTTGAGAATGCTGTATTCAGATGGATTTGTGCCTTCATGGTCCTATTTATTTGCAGATAAGTCAAGGAAGTCATGTGTTTGACAGACTAAGTCAGTAGACAC--TCAAC--AGAAGCTTCTCCCTATGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGA
s HiC_scaffold_1 95073998 1134 + 233722169 CAAAGAACCTGAATGAAAGAATACAAGTtctcagggaa---aagaagggaCCCACAGCAGGTCTGAGAGAGATGACAGCAGGCGGGAAAGTGACTTCCGGTTTCCCGCGTGTCAGGCAAGACAGGGAGCACACAGGAAGTCGGTGAATGGATGGCGCTGGCCATGCCCTGGCTGTTACCTCACCTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCGTCCAGCAGGGCACAGATGCCCAGTCAGGAGAGCGTGG-GAAGATAAGC-ACAGACTGCAGAGGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGTAGAACCTGGAGGGCAGTAGGAGGCAGGGGATGGGGACAGGGGGCAGGG-----------------AAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCTAATGCAAGGGATTCACTTCACTGTTTCTGTGAATACAGAGGACTCCAAGTCCAGTTAGAACAGTCACCTGCTCTTCCAAAGTAAAGT----GGAAGGAAATGTTTC------CAT-----TCAGTT--------------TAAA--------------------------GGgatatacattttccttt------ttcctcaggaAGC-------AGCTAGAGTTGGG-----------------------------GGCAAGGA---------TTTTATAAAATGATCCCAGAGATACCATTGGCCTAAAACTTTTTCAATGAGCTTTTTCCTTGCTCTCTCCAGGTTCCCCGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGTGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGCCTGCTGCTGACCTGGA

a score=20678
s chr3           92992789 406 + 160039680 TTTGACAGACTAAGTCAGTAGACACTCAACAGAAGCTTCTCCCT----ATGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTGCAATTGGGAAAGAA
s HiC_scaffold_1 95282113 404 + 233722169 TTTAACAAACTGAATGAA-AGACACTGTTATGAAGTTTCTGGgtttaaatatttgcattttatt--tcaaggtAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCTGCCCCCTCCCAAGTGCCC------------CGCCCCCAAATGCCCCCAGAAGAGCCCAGCACAGTATCTACCTGCTGctccttcctgctctgctcccagcTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTCTGGAGATCAGACTCCTGTGATGGCGACAGTGGTCTGCAGTCTGGAGACTTTGGCTGTGGCCACAGCTCTGGGGGCTGCTGTTGACCTGAAATCTGATGCTGAGACAAAA

a score=11094
s chr3           92992820 361 + 160039680 GAAGCTTCTCCCTATGTTTCTATCCTACTCTTCT-AGGTCCAGTTCCTGCC------GAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgcc---ccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTG
s HiC_scaffold_1 95463572 418 + 233722169 GACACTTGTCCTgatggttttaaaattttctccttagGCTTATTGACTTCCTCTTGAAAAATGTCCTGTCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTCCC---AAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTGCTGCAG-CAGTG

a score=18881
s chr3           92992821 624 + 160039680 AAGCTTCTCCCTATGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTGCAATTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAG-----TTTCTCTGTCTTCTTTA------AGTGCTGAGATGTTTCCCAAGAGAGCTCAGATCTCTCCTGG-----CTCTTCCTGTTCTCCTCAAGATCCTGTACCTTGATATCTTGAGAGCTTTTGATAACTGCCTGGGTGGTTATCAT-CCTGTACTTGACCCTGTGGAAAGTAAAGAATGTGTTTCTCAACAGCACTGTGTGTCTCATGTCTGT
s HiC_scaffold_1 95247510 607 + 233722169 AAGTTTCTCTCTGAGCTTTTTCCTTGCTCTCTCCAGGTTCCCACACTGCACTGAGATGTCCTGCCAGCAGAACCAACAGCAGTGCCAGCCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAGCCCAGCACAGTTtctgcctgctgcc---tcctgctctgctccctgctctgGGGGCTGCGGTGGCCTCAGCTCCATCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCACCGCAGGCCCCATGTGTGCAATCTGCGGAGCTCGGACTCCTGTGATGGTGTCAG-GGTCTGCAGTCT-GGGACTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACATAGAGAGATTTCTGAAGAAAGCAGAGTCTCCAATGACCAAGAGA-AAGCCTCAAGCTGGCACTC--CTTTCCCAGGGATCCTTGGCTGTCTTTCTTGGAACTTGAAGCTAAAGTGTTCATGGGGAGGAATGTGTTTCCTTCAGAAGCCTCTACCCCTGTGCTTTCCAATGTCCCAAACAGTCCCAT-------GTTTTTG----------TAGTAATTATAACACCTCTGTCTCACcttgtcaaaaattaaaactgtttttcaaaac---------tATCTCTTGTCCAT

a score=20124
s chr3           92992821 458 + 160039680 AAGCTTCTCCCTATGTTTCTATCCTACTCT-TCTAGGT--CCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGG--GCTGCAGTCTC---CCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTGCAATTGGGAAAGAAACACT--ATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAGTTTCTCTGTCTTCTTTA-AGTGCTGAGATGTTT
s HiC_scaffold_1 95108170 460 + 233722169 AAGTTTCTCTCTGAGATTTTTCCTTGCTCTCTCCAGGTTCCCTGACCGCACTGAGATGTCCTGCCAGAAGAACCAGCAGCAGTGCCAGCCCCCTCCCAAGTGTCC------------CTCCCCCAAATGGCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccctgctctgGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGTAGTCTGGGTGCTCTGGCTGTGGCCACAGCTCTGGGGGATGCTGCTGATCTAGATCTGATGTTCAGATGAGAGATTTCTGAGCAAAGAAAAGTCTGCAATGACCAAGCTGGCAATCCTCTCCCAGGGGTCTGAGGCTCTCCTTATAATACTGAGCAGCTT

a score=13537
s chr3           92992835 343 + 160039680 GTTTCTATCCTACTCTTCTAGGTCC----AGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCA------------CAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT------------------------------------------------------------CAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACA
s HiC_scaffold_1 95421606 409 + 233722169 gtttctatttt-ttcatctagGATCTCTTAACTCTTGCCAAAATGTCCTGCCAGCAGAACCAGAAGCAGTGCCAGCCTCCTCCCAAGTG---TTCCCCTAAGTGCTCCCCTAAGTGTCCCCCTAAGAGTACCTCCAAGTGCTCAGCCTCATGCCTTCCTCCAGTCTCTACCTGCTGTAGCTCCAGTTCAGGGGACTGCTGT------AGCTCTGGAAGTGGGGGCTGCTGCCTGAGCCACCACAGGCCCCACCGATCTCTTCGTCACAGACACCAGAGCTCTGGCTGCTGCAATAGTGGCAGTGGTGGTGCCTGTACCTGTGGCAGTCACTGTACCTGCAGTAGTGATTGCAACTGCCGCAATAGACAGCAGTCTGGTGGCTCTGGCTGTT------GCTCTGGAGGCTACTGATGGCCGGGCCA

a score=11601
s chr3           92992857 391 + 160039680 TCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAAC-ACAGTGTCTGCCTGC---AGCCTCTTC--------CTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCC------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCT---------------------------------------------------------------------------------GTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTGCAATTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCA--AATGTTCAGTCCTCTTTCCCAGT
s HiC_scaffold_1 94993091 484 + 233722169 TTCATTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCTAAGTGCA---CCCCCAAATGCCCACCCAAGTCCCCCT------GCCCACCTCCAGCGTCTTCCTGCTGTAGCCTGGGCTCTAGCAGCTGCTGTGGCTCCAGCTCTGGAGGCTGCTGCAGCTCGGGTGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAAGCCCCGCCGATCTCTTCTACGCAGACACCGACACCAGAGCTCTGGCTgctgcagcagtggtggcagtaGTGGCTGCTGTGGCAGTAGCAGTAGCTGCTGtagcagcagtggtggcagtggCTGCTgcagcagtggtggtggcagtggccaGCAGTCTGGGGGCTCCAGTTGGTGTCACACCTCAGGGAGCGGCTGCTGACCTGGGC--CACAA-----GGAGCAGCATTAGCAGAA----------GAACCTGAGCAGTCTCTTGTCCTATTTGCCAGT

a score=11745
s chr3           92992864 306 + 160039680 CCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCC------------TCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGC---CTGCAGCCT--CTTC------CTGCTGTGCTACAAGCTCTGGGGGCT------------GCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCT---------------GTGGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95541464 345 + 233722169 CCTACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAATGCCCTCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCCCCTAAG-----GCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCTGGTGGCTGCTGTGGCTCCAGCTCTGGGGGCTGTTGCAGCTCTGGTAGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCGCCGCAGGTCCCACCGCCATAGACACCAGAGCTCTGGCT------------GCTGCagccagccctcgggaggctccAGCTGCTGTGGAGGGGGAAGCAGCCAACAGTCTGGAGGTTGCTGCTAA

a score=10201
s chr3           92992865 330 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGT---------GGCCACAGC------TCTGGGGGCTGCTGCTGACCCAGACAGTGCAATTGGGAAAGAA
s HiC_scaffold_1 95586344 330 + 233722169 CTGTGGAGATGTCCTTCTAGCAGAACCGGCCACAGTGCCAGCCCCCTCCCAAGTGCA---CCCCCAAGTATCCT--------ACCTCTAAAGGCCCCAAAGTAGTGTCCCCCTAAGTGGCTCCCAGTCTCTTCCTGCTGCAGGGTCAGTTCTGGGGGCTGCTG------CAACTCTGGGGGTAGTGGCTGCTGTCTGAGCCACCACAGGCACTGCTGGTCCCACTGCCACAGACATGAGAGCTCTGGCT------------GCTGCAGCCAGCTG-CTGGGGTCTCCAGCTGCTATAGAGAGGGTGGCAGCCTACAATCTGGAGGCTGCTGTTGAAGTGGACTCTGAACTTAAATAAGAA

a score=12227
s chr3           92992865 305 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgct---ccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGA---------------------GGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCT---------------GTGGCCACAGCTCTGGGGGCTGCTGCTGA
s HiC_scaffold_1 95576008 328 + 233722169 CTGTGGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCACCTCCCAAATGCA---CCCCCAAGTGCCCCACCCCAAAATGCCCCCCAAAGTGTCCGCCTAAGTGC---CCCCCAGTCTCTTCCTGCTGCAGTGTCAGCTCTGGGGGCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGCAGCTCTGGGGGTGGTGGCTGCTGTCTGAGCCACCACAGGCGCCAGAGGTCCCACCACCACAGACACCAGAGCTC---------TGGCTGTTGCA---GCCAGCCCTCGAGGGGCTCCAGCTGCTGTGGAGGGGGGAGTAGCCAGCAATCT-GGGGCTGTTGCTGA

a score=11450
s chr3           92992865 316 + 160039680 CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgcc---ccccaaagAGCACAACACAGTGTCTGCCTG---------CAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------GGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGT-----------CAGCAGT-CTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTG
s HiC_scaffold_1 95524247 366 + 233722169 CCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGCCCTCCC---AAGTGCCCTCCCAAGTGCCCCACCCCAAAGTGCCCCCCGAAATGTCCCCCTAAATGCCCCCCAGTCTCTTCTTGCTGCAGCCTGGGTTCCAGTGGCTGCTGTGGCTCTAGCTCTGGGAGCTGCTGTGCCTCCGGAGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCTCGCAGATCTCTTCGACTCCGACACCGACACCAGAGCTCTGGCTGCTGCAGCAGTGGCGGTGGCGGTGGCTGCtgcagcagtggtggtggtggtggctgctGCAGCAGTGGCGGGGGCGGTGGCTGCTGCAG-CAGTG

a score=5244
s chr3           92992868 328 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG------CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTGCAA---TTGGGAAAGAAA
s HiC_scaffold_1 95609527 303 + 233722169 CCAAGATGTCCTACAAGCAAAACCAGCAGAAGTGCCAGTTCCCTGCCAAATGCC---CCCCAAAATGTCTACTTGATTGCCACC------------CTCAGTGCCCACAAGCTCCTTCTTCATGTCCCCCTTCTGGCTCC----CCTCCAGCCTCCTCC-TTCTG-----TGTTTCCACCCGTG-TATCTCTGGTATCTTACCGGTTTCCACGATTCTATCTGCACCAGCCCCAGTGTTCA-AACTGCTGTGAAAACCTGTCCTCTGGATGTCCTGGCTGCTGCCACAACTCCGGAGGCTGTAACTGACC-------TGCAACTTTTGGGACACAAA

a score=11310
s chr3           92992868 408 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCT----------------tccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACC-----CAGACAGTGCAATTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAGTTTCTCTGTCTTCTTTAAGTGCTGAGATG
s HiC_scaffold_1 95344267 413 + 233722169 CCAACATGTCCTACCAGCAAAACCAGTAGCAATTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGTTCCAAAGTACCCACCCCAGAGCCCAGCATAATGCACTCCTTGGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGTTCTGGGGGTGGTGGCTGTTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTATTGAGAAA-ATGGATGATCCA----GAGCCCATTACCTCCTGATG---------CTTTCCTCATTACACTCTCTCATATAAATCATGAATTG

a score=13275
s chr3           92992868 309 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAG------------TGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---------------------------GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG------GTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGAC
s HiC_scaffold_1 95388587 354 + 233722169 CCAAGATGTCCTGCCAGCAAAACCAGCAGCAGTACCAGCCCCTTCCTAAGTGTCCACCCAGGTGCACCCCAAAGTGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTCCCCAGTGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAGCTCTGGGAGCTGCTGTGGCTCCAGCTCTGGGGGTGGGGGCTGCTGCAGTTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGCCTCTTTCCCTACCACCACAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatAGCTCTGGGGGCTGCTGCTGAGCTGGGC

a score=8330
s chr3           92992868 330 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTt------------ccccaaagtgctccccaaagtgccccccaaagAGC----------ACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTG-TGCTACAAGCTCTGGGGGCTGCAGTCTCCC------------CAGCTCT---GAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCT-CCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCT---------------GACCCAGACAGTGCAATTGGGAAAGAAACA
s HiC_scaffold_1 95193426 374 + 233722169 CTGAGATGTCCTGCCAGTAGTACCAGCAGCAGTGCCAGCCCCATCCCAAGTGGCCTCTAAAGTGTCTTGCCCATAAGTGTTTCCTCAAATGATTCTCAAATGTTTGTTCTCCTAACCGCACCCTGCTGATCTCCAGGCTCTTCCTGCTGTTGCT--CAGCTACTGAGACTGTAGTAGCTCTTGAGGATGATGCAGTTCTTGGGATGGTAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTCCAGTTCCACACCCAGAAGTTGCTGGATCATG----CGTGAGTGTG----ACATCTTGGGGGTTCAGGCTGCTGCCATGGCCCAGGGTGCTCCTTCTGCACTGGGCCTTGAGGACCTCTAAAGAGCAAATAAGGAAGAACCA

a score=12495
s chr3           92992869 321 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCT-----GCTGACCCAGACAGTGCAATTGGGA
s HiC_scaffold_1 95352928 347 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAATGTGCCCACCCCAGTGCCCAGAGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTTGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCTTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAATGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTAAGCTGGCCCAGGAAGAGCTCTTGAAA

a score=12922
s chr3           92992869 318 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtcc---------ccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGA-----CCCAGACAGTGCAATTG
s HiC_scaffold_1 95313533 344 + 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACTCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAATGCCCAGTGCCATGCCCTCCTCTGGTGTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGATGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGAAGAGCTCTTG

a score=7350
s chr3           93018347 313 + 160039680 ccaccgctgctgccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTG---------------------------GAGGGCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCA-------AAGGAACTGGATAAAAGTGAAAAATAA
s HiC_scaffold_1 95263994 320 + 233722169 CCAGAGTTGTGACCACAGCCAGAGCCCCCAC----ACTGCCA-----ACCACTGTCAC---TATCACAGGAGTCTGAACTCCGCAGCCTGCACTTATGAGACCTGTGATGTCTGTGGTGGCACGGGCAGCAGCCTCC---CTCAGAGCTTCAGC------------TGAGGCCACTGCAGCCCACAGATGTGGGGGCAGAACAGGAGGAGGTagcaggcaggcacagtgctgggCTCTTCTGGGGGCACTTGGGGGAGGGGCATTTGAGAAGGGGTTGTCACTGCTGCTGGTTCTGCTGGCAGGACATCTCAATGCAGTCAGGGAACCTGGAGAGAGCAAGGAAAAA

a score=9215
s chr3           93018348 336 + 160039680 caccgctgctgcca----cagcaactgctgccaccgctgctgccacagc-----------aactgctg----ccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGG---------------------------GCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT--------CCAAAGGAACTGGATAA---AAGTGAAAAATAATACAAAAAAATATAAGGTCAACAG
s HiC_scaffold_1 95025850 378 + 233722169 CATCACCGCTGCTAAGTTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCAGGGAACCTGGGGAGAGCAAGGAAAAAGCTCAGTGGAAAAGCTTTAGGCCAATGG

a score=8641
s chr3           93018356 280 + 160039680 ctgccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACG---TCGGCGACGGAGAGAGAATCGG----GGCT-----TGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAA-----GAGGTTGGA---------GGGCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAG
s HiC_scaffold_1 95124100 289 + 233722169 CTAGCTCAGCAACAGCACTCAGAGCCATGGC---AGCAACCAGAGCCCCCACTGGGCTCACATTCAGAGCAGTTAGGAGCCTGGGGCCTGCAGTAGGATTGGAAGAGGCTAGTTCTATTGTGGCTCAGGCAGCAGCCACAACCCACAGAACTACAGCAGCCCCCAGAGCTGGAGCCACAGCAG-----------GAAAATACTGGAGGAAGGCATGATGCTGGACACTGCAGTGGACATTTTGGGG---TGCACTTGGGAGGGGAGTGGCactgctgctgcttttgctgacAGGATATCTTAAGAG

a score=8718
s chr3           93018362 268 + 160039680 cagcaactgct------gccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTC---GGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCT------GCAGCAGCCCCCGGAGCTGGAACCACAGCA----GCCCCCAGAA----------CCCAGGCTAC---AGCAGGAA-----GAGG-----TTGGAGGGCACTTTGGGGT---CTTG------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95198814 319 + 233722169 CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACTCACAGCAATCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTAGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=8490
s chr3           93018362 268 + 160039680 cagcaactgct------gccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTC---GGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCT------GCAGCAGCCCCCGGAGCTGGAACCACAGCA----GCCCCCAGAAC-----------CCAGGCTACAGCAGGAAGAGGTTGGAGGGCACTTTGGGG----TCTTG-----------------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95215622 319 + 233722169 CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCAGTGGGCTCACACTCACAGCAGTCAGGAGCCTGTTGCCTGTGGCAGTGGTGGAAGACACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCGAGTTGGAGCCACAGCAAGAAGACACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=8966
s chr3           93018362 268 + 160039680 cagcaactgct------gccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGA---GAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCT------GCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGA-------------------------AGAGG-----TTGGAGGGCACTTTGGGGT---CTTG------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95149256 319 + 233722169 CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAACAGTCAGGAGCCTGGTGCCTGTGTCGGTGATGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGA---AGAGACCAGAGGAGGGCATGGCGCTGGGCTCTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=9067
s chr3           93018362 268 + 160039680 cagcaactgct------gccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTC---GGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCT------GCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGA-------------------------AGAGG-----TTGGAGGGCACTTTGGGGT---CTTG------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95137982 319 + 233722169 CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGTGGTGGAAGAGACTGCGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGA---AGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=7897
s chr3           93018362 268 + 160039680 cagcaactgctgccaccgctgctgccacagc------------aactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACC---ACATCCAGAGCTG------CAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTG--------------GAGGGCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 95235728 289 + 233722169 CAGCAGCAGCCCCCAGAGCTGTGTCCACAGCCAGAGTCCTGCAGACCACTGTCACCATC---ACAGGAGTCTGATCTCCACAGCCTGCACTAGTGGGACCTGCGGTGCCTGTGGTGGCTCAGGCGGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACTGCAGCCCCCAGAGTTGGGAACAGAGCAGG-----------aggaagcagcaggcagatatTGTGCTGGGCTCTTCTGGGGGCACTTGGGGTAGGGAAACTTGGGAAGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT

a score=9368
s chr3           93018362 304 + 160039680 cagcaactgctgccaccgctgctgccacagc-----------aactgctg----ccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGG---------------------------GCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAGGAACTGGATAAAAGTGAAAAATAATACAAA
s HiC_scaffold_1 95039922 328 + 233722169 CAGTAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGCCTCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCaaggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCAATGGGAATTGTAC---Cttgaaacaaaatgcaaa

a score=4277
s chr3           93018389 230 + 160039680 cagcaactgctgccaccgctgctacagcATCCAGAGCTG---------TGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATC----------CAG--AGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGG---------------------------------------TTGGAGGGCACTTTG--GGGTCT-------TGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTG
s HiC_scaffold_1 95137982 296 + 233722169 CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGCCTGTGGCGGT---GGTGGAAGAGACTGCGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGCCCTGAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCGCTGGGCATTGGGGTGGACACTTTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTG

a score=4243
s chr3           93018580 202 + 160039680 GCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACA--TCTCCAAAGGAACTGGATAA--AAGTGAAAAATAATACAAAAAAATATAAGGTCAACAGCTC--AAATGTTGCTTTGAAGACTGAACTATGAATTTACAGTATCTTATCTCTAAAATAGTTAGAAGTTTGAAAAC-CCAATCTCTTAAATTTATTTCGAG
s HiC_scaffold_1 95460309 206 + 233722169 GCACTTGGGAGGAGGTTGGCACTGCTGCTGGTTCTGCTGAAAGGACATTTTTCAAGAGGAAGTCAATAGGCAATAGGAAGTCAATAGAATGCTAAGTTAAGTCCATGATTCCAAAGCGGTCCTTTTAAACTAACACTATGAA---ATACCATCTGTTAATTCATTCAGCCATATGTTTTAATACTTTGATCTTTTGATGTTAGCTCTAG

a score=8498
s chr3           93064735 227 + 160039680 TTAGTTCTCACCCCCTCTGCTGCATCACATTCTTCTCCTACACTGTCTGATGTCCATAATGTTAAGTTGTCTCTAAGCAACTGCATGATGAGGGTGCTGTCTTTGTAGGAGTCTTCATTCAGTGTATCAAGCTCTGCGATGGCCTCATCAAAAGCCATTTTAGCTAGGGTGCAAGCAAGCTCTGGACTATTAAGGATCTCATAGTAAAATACACTAAAATagccggg
s HiC_scaffold_1 67869376 222 + 233722169 TTAatcttcctctcctc--ctgcttcagcttcatcTTCTTGGGAAGCTGATGTCCACAATGTCTAGTTGTCTCTCAGTAATTGTGTTATTAGTGTACAGTCCTTGTATGACTCCTCACTAAATGTATCAAGCTCAACAATGGCTTCATCAAAAGCTACATTTGCTAGAGAATGGGTTTTAACTGGAGAGTTCAGAATCTCATAATAAAACA---TAGAGTAGTTGAG

a score=17891
s chr3            93152138 674 + 160039680 CTCCTTTTTCATGATGCCTTCTAGATG----GGTATGTTAAAAAGATCTGAATATCTTCATCACAACCGCTGACTATGAACATCTTACTGAAGT-TAATGCTAAACGCAAACTTGAAACTTTCTATGAGAAGCGCATGGCCACAGAAGTCGCTTCTGATGCTTGGGGTGAAGAATGGAAGGGTTATGTGGTCCGTCCAAATCAGTGATGGGGATAATAAGCAAGGATTCCCCACAAAGCAGGA----GGTCTTGACTCATGGCAGAGTGT-----------TGAGTAGA----ATTTTTGTTATAGACCAAGGAGAACTGGAAAGAGAAAGCTAAGTTTGTTTGGAGAAGCACTGTGGATACCAATCTGAG--------------------------CCAAAAGGGA----GAATATTCCTCAACTGACAGATAGTACTGTGCTTCAGTTATTGGGG--TGAAAG----AGCAGAATACATAAACTTTTCTAGTCTCTCTAAAGAACATGTAGACTACCGACATGTCCAAAAGCTTTTCAACAAAGAAGGTAAGAGGCCCAAGACCAATGCACCCAAGAGCTAGCATCTTGTTACCCTATATGTCCTGCAACAAAAATACTA----------ATGAAGAAATAACACACTAAGGAAAATAAAAATGAGGCTGTATAATATGCCTTATTTTTGGTCAAGAGAATTAAGAAGCACCCCCCAAAAAGCCAGGAACAGATTGCCAAGA
s HiC_scaffold_1 183145799 708 + 233722169 CTTTTATTTCATAGCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAAATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATG--TGATCCAAATCAGCAGGAGGAATGA----CAAGGTTTACTCACGAAGCGGGGATTCAGTTCTGAACCACGGCCATGTGTGCCTGCTACTCTGAGTAAGGATTATTCCTGTTACAAACTAAGGAGAGCTGCAGAGACAGCAC-ACATCTGTTGTGGGTTGCACCATGGGTGCCAATCTGGGCAATGTAAGCATTgttatcacacacacaaaaagagaaaacgGACATTCCTGGACT----AATACCACTCTGCCCTGATGTTTGGGGCTCAAAAGAGCTAGCAAAAGCTACAAAC-TTTAGAATGCCTCTAAAG---ATGTCAACAAATATGTCATCAAAAAGCCATTATACAAGAAAGGCAAGCAACCCAAGACTTA--------------AGCATCCTGTTACTCCATGTATTCTACAACACAAACTCCACTACATTGCTCTGAAGAAACAGTTgactaaggaaaataaagagaaggtTACATAATATGGTAAACTTTTGGccaagagataaagaaag-------ctAAAGGCTGGGAACAAATTGCCAAGA

a score=13808
s chr3           93152230 641 + 160039680 ATGCTAAACGCAAACTTGAAACTTTCTATGAGAAGCGC----------ATGGCCACAGAAGTCGCTTCTGATGCTTGGGGTGAAGAATGGAAGGGTTATGTGGTCCGTCCAAATCAGTGATGGGGATAATAAGCAAGGATTCCCCACAAAGCAGGAGGTCTTGACTCATGGCAGAGTGTTGAGTAGAATTTTTGTTATAGACCAAGGAGAACTGGAAAGAGAAAGCTAAGTTTGTTTGGAGAAGCACTGTGGATACCAATCTGAGCCAAAAGGGAGAATATTCCTCAACTGACAGATAGTACTGTGCTTCAGTTATTGGGGTGAAAGAGCA------GAATACATAAACTTTTCTAGTCTCTCTAAAGAACATGTAGACTACCGACATGTC-CAAAAGCTTTTCAACAAAGAAGG--TAAGAGGCCCAAGACCAATGCACCCAAGAGCTAGCATCTTGTTACCCTATATGTCCTGCAACA-AAAATACTAA--------------TGAAGAAATAACACACTAAGGAAAATAAAAATGAGGCTGTATAATA---TGCCTTATTTTTGGTCAAGAGAATTAAGAAGCACCCCCCAAAAAGCCAGGAACAGATTGCCAAGATTTTTCAGCCATTCTCACTGAGATCTTCTACT----TCAGAACTCAGTCAAAACATAAGATCT
s HiC_scaffold_1 12605554 654 + 233722169 ATAATGGACAAGAGCATTATACCTTTTTTGAGAAGCATGTGGAAGCAGATGGCCACAGCAGTTGCTGCTGGTGCTCTGGGTAAAGGATGCAAAGGTGATGTAGT-----CACATCAGTGATGGGAACCACAAATAAGGATT-CCCATGAAACAGAATG--TTCACCTGCTACTGAG---TAAGAGGTATCTTTGTGATTAAtccagaaaaattagagaaaga-----aattCTCTTTGGGGTTGCATAAAAGATGTCAATTTGAAACGGAA--AAGAATAGTCTTGGAGTGACTGATAATACTGT--CTCATCACCTAGGGCCCAAAAGAACTTAAGGAGTCTATAAAGTATTCAGATTTATCTAAAAAGT-TGATGTCCACCCATATATTGTGCAACCTCcctaaaaaagaaggaaaaagaaacacaggatcAAACTGCCTAATATTCAGAATCCTGTTATTCtatatattataaaatgcaaaacatCAATCAGAGTATTGTTCTGAAGAAAGAGCCtgttaagaaaaataaggaagagaCTGCAGGATGCACTACTAAACTCTTgaccaagagaatgaaagagaa-----agaaatgtcagGAAAAGACC-CAAAGAGATAGTGGCAGCCCTCTCTGAGGACTTCTCCCCAAGTCTGAAACcagtcaaaa-acaagattt

a score=4704
s chr3           93161867 77 + 160039680 CCTTCCCCAAATGTCCCTTGCTTAGAAGAAAGATCAGGTACCACAAAAGAAGGCCAACTCTCTTAGAGCTCAGCAGC
s HiC_scaffold_1 99933825 77 + 233722169 CCGTCCCAAAATGTCACTTGCCCAGAAGAAAGATCGGGTAGCTCAAAAGAAAGCAAGCTTCCTCAGAGCTCAGGAAC

a score=48991
s chr3           93235514 1145 + 160039680 ATCAGAACGAACTCTTTGGGAAGATTCAGACCAACTTTGAGGAGA-AGGGGATAATGGCACCTTTCATGGATGGCTGAAAGAGACAAGCAGCGCCCTGACTCACGCTGGGGCCCATCTTGACCTCTCCAGATTCTCCTCCTGGGAGGAGTTGGCATCCCTGGGTCTGGACAGATTGAAATCTACACTGTTGGATTTGGGCCTCAAGTGTGGTAGGACCCTC---------------------TTCAGCACCAAAGGAAAATCCTTGGAGTCACTG------------TTTGCCAAAAATCCCAAGTCAAAGGGCACAAAAAGAGACACTGAGAGGAACAAAGTCATTGCTTTCCTGGAAACCCAGATCTATGATTATGTGGAGATTCTCAGGGACCAGCAACAGCTCA-CTATGAAAATGTACAGTTCGAGCAAGCCGgggggggggggagaaagaggatgaggagggggaaggggaggagaggaaagaggaggagggggaaggggagaagggggaaggaggaggaggacgaggaggggaaggggtggacgatgaagaggaggaggaggagATGATCAGTGAGAGCAAAAGTGAGGATGAAGAGAATGAGATCATTTACCATCCCAAAAACTTGCCTCTGGGCTGGGACAGCAAACTCATCCCTTATGGGCTGTATAAGCTTCATGGCCTGAATATCAACTACAACTGTGAGATTTGTGGAAATTGCACCTACCGAGGGCCAAAGGCCTTTCAGTGGTACTTTGCAGAAATGGCGTCATGCTCATGGCATGAGGTGTTTGGGCATCCCAAACACTGCCCACTTTGCAAATATGACACAGATTGAAGATGCTGTCTCCTTGTGGGCCAAGCTGAAACTGCAGACAGTTTCAGAATGATGGTAGCCTGACTCTAAGGAAGAATATGAAGACTCCAGTGGAAATGTTGTGAGCAAGGAGACATATGAGGATCTGGAAAGACAAGGGCTGCTCTAGTGGTTGGCCATG--------------------CCCAGGTTTCCCTGAGA----------AAAGTTTTCCCAACCAAATGTTCTTAAAGACTTTTTTGCTATGTAATATC-------------TATCTTGTAGAAACAAGACACGCTGGCAGATTGCGGAGTTGAGATGCGTTTTATCTTTGTTTTATATT---AAAAATATCTGTGGGAAAATAG---------------AAAAAATAGAAATAAACAA
s HiC_scaffold_1 60675648 1133 + 233722169 atcagaaTGAACTTCTTGGGATGATACAGACCGAATCTGAGAAGAGATGAGAGAACCATACCTTTCCCGGATGGCCAAAAGAGGCCAGCAGTGCAGTGACCCATGCTGGCCTCTGTCTCAATTTGTCTGCATTTGCCTCCTGGGAGGAGCTGGCCTTTCTGGGGCTAGAAAGATGGAAGTCTGCACTCTTAGTTTTAGACCTGAAATGCCA-GGGACCCTTGAAGAGCCAGACCAGAAGATGTCTAGCACCAAAGTGAAGATCTTGGTATCACTGGATGACTCCCTGTTTGCCAAAACTCCCAAAGCAAAGGGCACTAAGAGAGACCCTGAGAGGAACAAAGACATTGCTTTCCTAGAAGCCCAGATCTATGAATATGTTGAGATTCTTGGGGAACAGCGACAGCTCACCCGTGAAAATGTGCAACACAAACAAGATGGG-------------------------------ACAGGAGAAGAGCAa-------------------------------------------------------------------gaagaggagggggaagagcCCATCAGTGAGAGTGAAAGTGGAGGTGAAGAGAATGAGATCA-TTACAACCCCCAAAACCTAGCCCTGGA-GGGGATGGCAAGCCCATCCTGTACTGGCTGTGTAAGCTACACTGCCTAAACATCAAGTACAATTGTGAGATTTGTGGGAGCCACACCTACCGA-GGCCGAAGGCCTTCCAGCAGCACCTCACTGAA--TGCATCATGTTTACTGCAGGTGGTGTTTGGGCGCTCGGAACACTGCTCACTTTGCTAATGTGACACAGATTGAAGATGCTGTC-CCCTGTGGGCCAGGCTGAAACTGCAGAAGGCTTCAGAATGATGGCAGCCTGACACTGAGGAAGAGTATGAAGACTCCAGAGGGAAtgttataaa-aagaaaacctatgaagtTCTGAAAAGACAAGGACTGCTGTAGTGTTTAGGGATGTAGTTCAATTTCTGGGCTTTCCCAGTCTCCCTTGAGGTCTGCTTTCTCTATTTCTCCCAACC-AATGCTCTTAAAAAC-TCTTTGCTATTTAGTCTCATAGTCTGGCAAGCATCTTGCAGAAACGAGGCATGCTGGCAGGTTGCAGGGCTGAAATatgttttatctttgttttatattttaaaaacaatccaTGGGAAAATAAAACCAgcctttgtttaaaaaacaaaacaaaacaa

a score=42901
s chr3           93278069 1091 + 160039680 CTTGCCAGGCGTCCTCGTTGGAGTGACATCGTCTTTAAACCCCGGGTGGCAATCCCTGATGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTCAAGATCATCCAACTTTTGGATGATTACCCAAAATGCTTCATTGTGGGAGCAGACAACGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTCCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAAAACCATGATGCGCAAGGCCATCAGGGGCCACTTGGAGAACAACCCAGCTCTGGAGAAACTGCTGCCTCACATCCGG-GGGAACGTGGGCTTCGTGTTCACCAAGGAGGACCTCACTGAGATTCGGGCTATGCTGTTGGCCAATAAGGTGCCAGCTGCTGCTCGGGTTGGTGCCATCGCCCCATGTGAGGTCACTATGCCAGCTCAGAACACTGGTCTGGGGCCCGAGAAGATCTCTTTCTTCCAGGCTTTGGGCATCACCACGAGAATCTCCAGAGGCACCATTGAAATTCTGAGTGATGTGCAGCTGATAAAGACTGGAGACAAGGTGGGAGTCAGCGAAGCCACACTGCTGAACATGCTAAACATCTCCCCCTCCTCCTTCGGGCTGATCATCCAGCAGGTGTTTGACAATGGCAGCATTTATAACCCGGAAGTGCTCGACATCACAGAGCAGGCCCTGCACTCTCGCTTCCTGGAGGGTGTCCACAACGTGGCCAGTGTGTGTCTGCAGATTGGGTACCTGACTGTTGACTCGGTGCTGCACTCCTTCATCAATGGGTA---CAAGCGCGTCCTGGCTTTGTCTGTGGAGACTGAGTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCCTGGCTAATCCATCTGCATTTGCGACTGCTGCC---ATCACTGCTGCCCCTGCGGCTGCTAC-----------AGCACCTGCCAAACCTGAAGCAAAGGAAGAGTCTAAGGAATCAGATGAGAATATGGGATTCTGTCTCTTCAAAGAATAATCCCCTCAAAGCAACCAAGTCAGC-CTGCTTAATTTGAGAAAGATGGAAATGAAGGCTTATTTCTCTTTAAAAAAAAAA
s HiC_scaffold_1 98425105 1032 + 233722169 CTTTATAGGAGTCCTCATGAGAATGATGTC----CTTGACCCTATATGGTAATCCCTGACACACTTTCATGATGCTCAGAGAAGACAGG-TGATGTGAAAGCTCATTTACTTCCTTAAAATCATCCAACTTTTGGATGATTATCCAAAATGCTTCATTGTGGGAGCTGACAGCATGGGCTCCA---------AGCAGATTCTCATATTCTTCCAAGGGGATGCTGTGGTGCTAATGGGCAAGATCTCCATAATGCATGAGGTCATCCAAAGGCAACAGGAAAATAGCCCACCT------------CTGCTTTGTATCTGGAAGAAATCTGAGTTTCACATTCATCAAGTGGATCCTTGTTGAAATCAGAAACATGCTGCTAGCCAATAAAGTACGAGCAGTCAACCATGCTAGTGCGAATGTCCCCTGTGAAGTCACT----------------CTGGCCTGTGGTCTGAGAAGACTTTCTTTTTCCAGGTTTGAGGCATCCCTACTAAAAACTTCAGGGGTACTGTTGAAATTCTGAAT-------AGGTGATAATAACTAAAGACAAAGTGGGAG-CAGTGAAGTCACACAGCTGAACATACTAAACAT----CCTTTCTCCACTGAGCTGATTATCCAACAAGTGTTCAATGGTGGCAGTCTTTTTATTCCTGAAGT--TTGACATCGCAGAGGAAAATCTGCATTCTTGCTTTCTGGAAGG-----------------GTGTCTGCCTGTAAACTAGTGACTCTATTACTGCCTCTGTCCCCTCTTCTATCATTAATGGGTACATCAAATAGGTCTTGGCTTTGTCTGTGAAGGCTTAGTACACTTTACTACTTGCCAAAAAGATCAAGGCTTTTTTGGCTGGTCCATTGGCATTTGTGGCTGCTGCCCCTGTGGCTACTGCCACTACTCCTGCTACTGCTGTTTGGTGGCAGTAGCCAAGCCTGAGTCCAAGGAAGACT-GGAGGAGTGAGATAAGGGAATGGGATTTGGTGTCTTCA---GTTAATCACCAGAAAGCAATGAACTTAACTCAGCTTTATCTTTAAATGA-GGGAATAAAGGCTTGcttctcttaaaaaacaaaa

a score=4677
s chr3            93396318 278 + 160039680 GGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAG
s HiC_scaffold_1 179590088 260 + 233722169 GACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG------------------TCACCTGGTCGGAGGAGGTGGCCCGGACCGAGG

a score=4751
s chr3            93396321 260 + 160039680 CAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGG
s HiC_scaffold_1 179590055 260 + 233722169 CAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5443
s chr3            93396357 260 + 160039680 CAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGG
s HiC_scaffold_1 179590055 260 + 233722169 CAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5745
s chr3            93396384 269 + 160039680 CACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGG
s HiC_scaffold_1 179590046 269 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5673
s chr3            93396420 269 + 160039680 CACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGG
s HiC_scaffold_1 179590046 269 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5684
s chr3            93396456 269 + 160039680 CACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGG
s HiC_scaffold_1 179590046 269 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5745
s chr3            93396492 316 + 160039680 CACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACC
s HiC_scaffold_1 179590046 298 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG------------------TCACCTGGTCGGAGGAGGTGGCCCGGACC

a score=6134
s chr3            93396527 268 + 160039680 CCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGA
s HiC_scaffold_1 179590045 268 + 233722169 CCACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGA

a score=5393
s chr3            93396564 245 + 160039680 CACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCA
s HiC_scaffold_1 179590046 245 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCA

a score=4533
s chr3            93397284 269 + 160039680 CAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGG
s HiC_scaffold_1 179590046 269 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=4325
s chr3            93397290 227 + 160039680 GGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGG
s HiC_scaffold_1 179590088 227 + 233722169 GACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=4712
s chr3            93397290 299 + 160039680 GGTCACAAAGACAGACAAGGCCAGAACACTCACCA---AGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGG
s HiC_scaffold_1 179590016 299 + 233722169 GGTCTTAAAGA---AGAAAGCCCGTTCCCACACCACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5122
s chr3            93397356 269 + 160039680 CACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGG
s HiC_scaffold_1 179590046 269 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGAAG

a score=5328
s chr3            93397392 267 + 160039680 CACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGA
s HiC_scaffold_1 179590046 267 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCAAGGAGGTGACCAGGGGCAAGGA

a score=4698
s chr3            93397428 245 + 160039680 CACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCA
s HiC_scaffold_1 179590046 245 + 233722169 CACCCGGAGCAAGAAGGTGGCTCAGACCAAGAAGGTGACCCCGACCAAGAAGGCGGCCCAGACCAAGAAGGTGACCCAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCCAGACCAAGCAGGTGGCCAAGACCAAGGAGGTGGCCCAGACCAAGAAGGTGGCCAAGACCAAGGAGGTGGCCCAGATCAAGGAGGTGGCCCAGACCAAGGAGGTGGCCCAGATCAAGGAGGTAGCCCAGACCA

a score=22801
s chr3           93420583 819 + 160039680 agagaaaccttgtctcggaaaaaaaa---------aaaagtccaaatgtaagtaattgaggTGCCTTTCTCTGCTTTTTGATGGTTCCCAGGAATAGTCATTTCCTAATTCTTAGCAATAAACAAAGTTTCAGAATTCTTTGCCTGGTACTTCAGGAAATCATGCAGGTAATTCAACAACAATGCAAGAATCTTCTCATGCAGAAATATATA-ACTGGCATTTCTCCCATCTGTAAAAATAATCACGGGAGACATGATGGCCTGCATA------CATGGGTGTTTCCAGGTGATCTAAAAGAATATCTACATACTGTGGTCTCTGTAATTGGTAAAGTAGTT---TACTCCACAGTACACTGACACCTTCTTTCATTTCTACAACTACTTCATTAATACCATA-TTCTTGTAATGCCTGCTTCCTGGCTATGTCTTGTAATTTGCATAATCCTTCC----AGAACCCACA---TTCTTGGCAGGAAGATAAAAGAGCAGTTTTTCCCTTGTAATTAAGTCTTAGTCACCAACAAGCTATAGTTTTAGTTATTCAGGAATCTTTAACGTAAACTTCAACTCATATTGCTAAACATTGTTCCCTCACTCTCAACCCCAGAGATCATTAGAGTCTTCTTCT------GAAACGGAGATGTTTCCACAAAGAACTGCCATTTCCACTCCTGGGTGTTTGCCTCCCTTTCATTTCTTTGCTTCTC-CTTCGACATTTTTCTGTTATAGAGACCAATGTCTTTTTTCCTGTGGCAGTTGTTCTCATTTTT-----TGTTTA-TGCTCCTGGTTGGCTCCCTGAGATTCTTATTTAATCTTAA--------TTCacatttttgagtgctctact
s HiC_scaffold_1 83186614 834 + 233722169 AGAGAAA----GACTAGGAACAAAACCGCGTGGACAGAGATCCAGACGTGAGTG--TGAG-CGCCCCACACTGCTTTCCGGGGGTACTCAGCGGAGGCCACTTCATAATCACTGGCGCTAAGCAAGGTTGCCGAATTCTTCGCCAGATACTTGAGGAAGTCATGAAGATAATTTAGTAATAAAGCAAAGCTTTTCTTATCCAGGGGTGTGGATGCCAACATCGCTCCAATTCATACAAATAGTCTCAGTAGGTGTGGTGCTCCATACACCTGGGCATGGGTGTGTCGGGGTGATCAGCAAGGATCTCTGCATACTGTGGTCTCTCAAATTTGTAGAGGAGCTGAGTGCCCAGCATCACAGTGAAGTATTCTTTAATCCCTGCTACAACCTCCTTAACTGCATACTCCTTATTATCCGTGTTTCCACAAGATTTCTTATAATTTGCATAGTCCCCTCGAATGGAATccacattcttcttggcaggaAGATAAAATAGCTGTTTCTGTTTAGTAATTAGGTCCCAGTCATCAACAAGCCACGGTTTTATCTCTTCAGGAATCTTT------AACTTCAACTC-TGTTCATAAAA---GTCTCTTCATTTTCAACAGTAGTATATACCCGGGCCCTCTTCTTCCGAGGAGGCTGAGTGGCTCACTGGTACTGCCACCATCTCCATTAccaggggttt---tttgtttgctctttttaattttcacgTCAACATTTTTCTGTTGC--AGACCAG-----------CTGTGAGATGCCCTCTCATCTTTCCCTCTGCATACTGCTCCTGATTGGCCTTTTGAAGTTCTCGCTGTTTCTGCAGACTGGTGTCCACATACGTGAGTACTCTGCT

a score=23492
s chr3            93420611 791 + 160039680 aagtccaaatgtaagtaattgaggTGCCTTTCTCTGCTTTTTGATGGTTCCCAGGAATAGTCATTTCCTAATTCTTAGCAATAAACAAAGTTTCAGAATTCTTTGCCTGGTACTTCAGGAAATCATGCAGGTAATTCAACAACAATGCAAGAATCTTCTCATGCAGAAATATATAA-CTGGCATTTCTCCCATCTGTAAAAATAATCACGGGAGACATGATGGCCTGCATA-------CATGGGTGTTTCCAGGTGATCTAAAAGAATATCTACATACTGTGGTCTCTGTAATTGGTAAAGTAGTTTACTCCACAGT---ACACTGACACCTTCTTTCATTTCTACAACTACTTCATTAATACCATATTC-TTGTAATGCCTGCTTCCTGGCTATGTCTTGTAATTTGCATAATCCTTC----CAGAACCCACATTCTT---GGCAGGAAGATAAAAGAGCAGTTTTTCCCTTGTAATTAAGTCTTAGTCACCAACAAGCTATAGTTTTAGTTATTCAGGAATCTTTAACGTAAACTTCAACTCATATTGCTAAACATTGTTCCCTCACTCTCAACCCCAGAGATCATTAGAGTCTTCTTCT------GAAACGGAGATGTTTCCACAAAGAACTGCC---ATTTCCACTCCTGGGTGTTTGCCTCCCTTTCATTTCTTTGCTTCTCCTTCGACATTTTTCTGTTATAGAGACCAATGTCTTTTTTCCTGTGGCAGTTGTTCTCATTTTTTGTTT------ATGCTCCTGGTTGGCTCCCTGAGATTCTTATTTAATCTTAA--------TTCacatttttgagtgctctact
s HiC_scaffold_1 121337737 808 + 233722169 AGATCCAAACATGAGTGA---GAGTGTCTCACAATGCTCTGTGATGATACTCAGGAGGGGCCACTTCATAATCACTGGCACTTAGCAAAGTTG-AGAATTCTTCACCAGATACTTGAGGAAGTCACAAAGATAATTCAGTAATAAAGCAGGGCTCTTCTCATCCAGAGGTGTATAAGCCAACAATACTCCATTTTATACAAATGATCTCAGTAGCTGTGGTGCTCTATATAGCTGAGGCATGGGCACATCCAGATGGTTGTCAAGGATCTCAGCATGCAGTTGTCTCTCAAACTTGTAGAGGAGCTGAGTGCCCAGTGTCACACTGAAGTATTCTTTTATCTCTGCTACAACCTTATTAACAGTGTACTCCTTATTATCTGTGTTTCCTTGAGATTTCTTATAATTTTCACAGTCCTTTAGAATGGGATTGACATTCTTCTTGACAGGAAGATAAAAGAGCTATTTCTGTCTGGTAATTAAGTCCCAGTCATCAACAGCCCATAGTTTTAGCTCTTCAGGGATTTTT-ACTTTAACTTCAACTC---------------TCTTCTTCATTAACAACAGTAGAATCTATCCAGGTCCTCGTCTTCCAAGGAGGCTGAGGGGTCTCACT--GGTACTGCCCCTGTCTCCATCACCAGGGGttt--ttagtttgtctttttttgttttcacttcgATATTTTTCTGTTGCAGA-CCAGATGACTTCTTTCCTGGAGCAAcccttctcattttttcttctgcaTAATTCTCCTGATTGCCTTTTTGAAGTTCTTGCTGTTTCTGCAGATTGGTGTCCAAATATTTGAATAGTCTTCT

a score=43742
s chr3            93433032 928 + 160039680 CTTCCACCTTTTTTTTTTTTTTTCCTGTCACAAAAAAAGCTTTATTTTAACTT-GGTCCAAAACTTGAGAGAGG-CTCCAGAGCGGTTACAAAGCTGC-----GGCTTGAGAG-----GTTCATTCAGATGGAGGTCTTGAGGCAAGTTGGTGCAGAACAGAGTGGAGAGCCCCTTGGA-------AGGCACAGAGGCCTCCTAGTCGTGCTTGAGAGTGAGGCGCTCAAAGAGATACTCCGTCAGAGATGCCTGGGGCACGCCAGTCTGTGCTTGTTGTGGCCCTGCCACCCTACGGAGGTTGGTCAGATGGTTGCCCATCTTCTTGATGAGCTTCACCTCCTTATCCAGGAAGTGGCTTTCCAAGAAGTAGCAGAGATGAGGGTCTGCGCGGGCAGAACCCAGGGCATGCAGATCCAAGAGTGCCTGGTTCAGGTTCTTCTCCAGGGCCAAGGCAGCTTCCATGGCCTCCTGGGTTTTACCCCATTCATCTTGAGCTGGCTTCTTCACATCCTGAAGGAGTGCACGACCCCCACGATCATTCTGCAACTTGAGCAGACACTCGGCCCCCTCGCGCTTCTCCTTGACCAATTCGCGGAAGAAGTGACCTACGCCCTTCAGAGCCGTGTCATCCCGACCAAAAAGGAAGCCCATAGAGAGATAGGTGTAGGAGGCCCGCAGGTGCAAGTTGACCAGGCGGTTCACGGCAGCTTCCACTTCAGTGGAATAATTCTGACGAATCTGAGAGGTCATGGCTGATCTG-GAGTATGAGCTAACCGCAAA--GATGGTGCAGACTGGTCCTAGGAGCCGAAGGTGAAGGCAGCAGAGGAGATGGTCCCGGAGGCTGT-------GGGTGGCTGGAAGCT---------------AATAAAGTGGGAGTCCCCGGGTCTGTTTCGTCCAAACACTGTTGAAGCAAGACACAGATCCACATGACCTCC-AAGGCGCCGCTC
s HiC_scaffold_1 207560208 926 + 233722169 cttttttcttttttttttttttttttttgctgtgaaaggctttatttttcttttggtccaAGATTTGGGAGGGGACTCCAAAGAGGTGAAAAAACTGCCTAGTGGCTGGAGGGAGAGGGTCCAGCCAAA-----GCCCTGATGCCAGT-GATGCTG-----------GAGCCCCTCAGATACTGCCAGGCTCTGGGGCCTCCTAGTCGTGCTTAAGTGTGAGCCTTTCAAAGAGGTACtcgcccagcccagcctggggaccGTC------------------------TAACCTGCGGAGGTTAGTGAGGTGGTCACCTATCTTCTTGATGAGCTTCACTTCCTCATCTAGGAAGTGGTTCTCCAGAAAATCACAGACATGAGGGTCTGTCTTGGCAGAGCCCAAGGCATGGAGATCCAGAAGAGCTTGGTTCAGGCTCTTCTCCAGGGTCAGAGCCGCTTCCATAGCATCAAGGGTCTTACCCCACTCATCCTCAGAAGGCTTCTGCACGTCCTGGAAGAGCGCGCGGCCGCCGCGCTGGTTTTGCATTTTCAGGAGGCGCTCGGCACCCTCACGTTTCTCCTTGGCCAGCTCACGGAAGAAATGGCCCACGCCCGCCAAAGCCACATCGTCGCGGTCGAAATAGTAGCCCAGAGAGAGGTAGGTGTAGGAGGCCTGCAAGTGCAGGTTCACCAAGCGGTTGACGGCAGCCTCCACCTCGGTGGAATAATTCTGACGAATCTGAGAGGTCATTGCTGATCAGCGGGAAGGAGCTACCCACAAAAGAACGGTGTAGGCTGGCCCTG------GAAGGAGCAGATGGTCGAGAAGATGGTCCCAAAATTTGTACCTGGAGAGTGGatgggagatttaaaaaaaaaaaaaaaaaaaaaaggagtcccCGGGTCTGTTCCGTCCAAACACTGTTGAAGCAAGAGACAGATCCGCGGGACCTCCGGACGCGCTgctc

a score=7834
s chr3            93433290 513 + 160039680 TGTGGCCCTGCCACCCTACGGAGGTTGGTCAGATGGTTGCCCATCTTCTTGATGAGCTTCACCTCCTTATCCAGGAAGTGGCTTTCCAAGAAGTAGCAGAGATGAGGGTCTGCGCGGGCAGAACCCAGGGCATGCAGATCCAAGAGTGCCTGGTTCAGGTTCTTCTCCAGGGCCAAGGCAGCTTCCATGGCCTCCTGGGTTTTACCCCATTCATCTTGAGCTGGCTTCTTCACATCCTGAAGGAGTGCACGACCCCCACGATCATTCTGC---AACTTGAGCAGACACTCGGCCCCCTCGCGCTTCTCCTTGACCAATTCGCGGAAGAAGTGACCTACGCCCTTCAGAGCCGTGTCATCCCGACCAAAAAGGAAGCCCATAGAGAGATAGGTGTAGGAGGCCCGCAGGTGCAAGTTGACCAGGCGGTTCACGGCAGCTTC-CACTTCA-GTGGAATAATTCTGACGAATCTG---------AGAGGTCATGGCTGATCTGGAGTATGAGCTAACCGCAAAGATGGTG
s HiC_scaffold_1 146462250 517 + 233722169 TGGGGGCCTGCC---CTGCGCAGCTCGGTCAGGTACTCGCCCAGGCCCTTGAGCACCGGGCCCAGGGGGCGCAGGTAGTGGCGCGCCAGGAAGTCGCAGAGGGCCGGGTCGCTTCGGCTGGCCGCCAGGCGGTGCAGCTCCATGAGGCTCTGGCGCAGCGCGTCCTCCAGGTGGAAGGCACACTCCACGGCCCAGGCGCCCCCATGCCAGTCATCGCTGTTGGGCTGCGCGATGTCGCGGAGGACGACGCTGCCGCCGCGCTCGTTCTGCATGAACATGAGC---TTCTCAGCAAGCTCCTGCCACTGGTGGGAGCGGCGCAGGAAGAAGCGCGCCAGGTGCTGCAGGGCCACGTCGAGGCGCTGGCAATAGCAGGCCATGGACAGGTAGACGTAGGAGGTGTAGAGCTGCAGCTGGATCTGCATGTTCACTGCAGCCTCGCACTCCACGTGG--TAGTTCTGGGGCGGCTGCATCGGCGCGGCAGCCATGGCGGGGCTCGGCGA--AGGCAACGGCGAGGGCGGTG

a score=6284
s chr3            93494659 201 + 160039680 TACAAGCCTCTGACTTAAAATACATA--------TGGACTGTGAAGTGAGTGG------TCAGAGGTAATGTGTGAAAAATTTTCTCTGTTCTCTTGAGCCAAAAACCC--ACAAAAATGCTACAAATCAAAAGGTTCAAAACTTTGTGTTCATTTTAAGAACATCCATCAAACTTTTCAGGTCGTCAAAAGCATGCATAATTTGAAAAGCTACCAA
s HiC_scaffold_1 176819638 210 + 233722169 tacagattTTTGTCTTCATATAAACGGCCTGAAGTGAACTGTGAAACCAGTGAGGCTTCTCCCTGGTAAGTAGGGA------TTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCAT-ATCCAAAAGGCCACCAA

a score=3808
s chr3            93531594 87 + 160039680 ATGGTTTTCTTGCTAACAGATTCCTGAGGTATTGTATGCTACCCCACATCAAGAGACAAGGAGTGTGCACACAAGGATGTTCACCCA
s HiC_scaffold_1 214805923 87 + 233722169 ATGGTTTTCTTGCTGGCAGAGTTTCAAGGTGGCAAAAGCTATCACATGGCAGGAGATAGGGAGTGTGCAGACATACATGTTTGTCTA

a score=13778
s chr3           93536917 670 + 160039680 AAGAAAAAATGAACTAAATAAAGATACTATAAATTAAATC----ATTAGGCAAATAGATAAAGGCTCCTGAACTGAGTGTTCCATCACCAGTTCATGGCCCAGTCCCAGTGATAAGGAATAGACTTTTACCTC--CCCACTGAGCCCGGGAAGACCTGAGTGATTTATCATACCTGCCCACCTCACAAAGACCTTATTGTACTATCTAGTAACTTGGTGAGAGAGATGATGGTTGGACCACACCTA-AGTAGTAACTATGACAACGCATACTTTGATTCTGACTCTTCTTAATCTTATAAGCCTCTCCCTATAACCACTAAGGACATTCCTAGATGGCCACAGTCAAGAAGGAATGTTGGGAGGGAGAGGCAAGTCTGCATGATTAGCTGGGAATGGCTA----TCTGAATGACCTCAGTGGCCTGGGAACACAGCCAGCAGGGGGAGAAATAAGCCTGTACCTCCTCCTCAG-------TTGGGAATGAAACCAAAGCTAAGCAATGTCTCTGTGCAGAGTCACTGCCTATTGCCCAGCAGCTTAGCTTCAGTGCTGTCATGACACATCACCCA-GAAGTCACCATAGTTTCTAGTAGGAATGCAGAA---AAACAAACAGAAAGGAATGATGCA-----AGTCCACGAAGAGATTAATTCTCAGCTGAGGAAGAGATCC-AGTGTGAACtgtgtgt
s HiC_scaffold_1 94469745 660 + 233722169 AACAAAGACAGAACCAAATAGAgattctataaataaaatatacagtcaCACAAATATACGAAAGATCCCAAAATTGGTATT---TCCCTAATTTGTGACCCAGACCTAGTAATGAGGAGGAAGATCTGTCCTTGTCCTGCAGCATTTCAAAGGACCTAGGTGACTCACTGTAACTGCTCACCTCACAATAACCCCATTGTACTGTCTAGAGACCTGGTAAGTGATAGGATG---GGAATACGCAGAGAGGAG-----AGGACCACAC-----CTGGTTCTGCTTCCAC-TAATCTCCTCAGTCTCCCTCAGTCACCACT----ACAATCCT-GCGGACCACA-TCAAGCAGGAAGGCTGCTAGGGGGAGGCAAGTCTGCACT----GGTGGGAACAGGGAGGGTCCTGAGTGACTCGAGCAGGCTGGGAGAACATGTGGCCAGGGTAGAGTACAGCACTAGCTCCCTTCTGAGCCCCACTTTCTCAACAGA---------GAGAAATGTTTGTTCCCACATTCACTTCATATCCTGCTGGTGCTCCATGTCAGCATTACCGTCAAACAAGATCTATGAAGCCACCACAATTTCTGGTAAG-GtacaaaacagagacaaagactcAGGCATG-TGCAAGCCCAGCCCACAAATAGATTAATTTGTAGCAGAGGAAGAACCCTAAATGTGAAAGTTGTGT

a score=9203
s chr3           93560941 154 + 160039680 AGGTTTCGACAGAC-TCTTCAAAATGCCATCCCAAATGGAGCACGCCATGGAAACCATGATGCTTACGTTTCACAGGTTTGCAGGCGACAAAGACCACTTGACAAAGGAGGACCTGAGAGTGCTCATGGAACGGGAGTTCCCTGGGTTTTTGGAA
s HiC_scaffold_1 62962978 154 + 233722169 AAGTTTCTACAGACCTCAGCAAAATGCC-CCCCGAGTGGAACATGCTATGGAAACCGTAATGCTTACATTTCATGGATTTGCTGCGGACAAAGGCTGCTTAACAAAGGTAGACCTGAGAGTGCTCATGGAAAAGAAGTTCCCTGGATTTTTAGAA

a score=19707
s chr3           93564233 412 + 160039680 tttttttaGAATCAAAAGGACCCTCTGGCTGTGGACAAAATAATGAAGGACCTGGACCAGTGCCGAGATGGCAAAGTGGGCTTCCAGAGCTTTCTATCACTAGTGGCAGGGCTCACCATTGCATGCAATGACTATTTTGTAGTAAACATGAAGCAGAAGGGGAAGAAGTAGGCCAACTGGAGCACTGGTACCCCCACCCTGGTGCGTGTTCACCCACGGGGTCACTTGAGGAATCTGCCCCACTGCTTC----------------TTGTGAGCAGATCAGGACCCTTAGGAAATGTGCAAATGAGATCCAACTCCAATTCAACAATCTGAGAGAGAAAACTTAATCCAATGGCAGAGAAGCTTCTGAGTTTTATATTGTTTGCATCCCATTGCCCTCAATAAAGAAAGTCCTTTTTTTAAGTTCTGAA
s HiC_scaffold_1 62963123 419 + 233722169 TTTTTAGAAAATCCAAAAGACTCTCTGGCTGTGTACAAAATCATGAAGGCCCCAAATCAGTGACGGGATGGCAAAGTGGACTTCCAGAGCTTCTTCTCACTAACTTCAGAGGTCACCATTGCCTGCAGTGATAGTTTTGTAGCACACATGAAGCAGAAGGGAAAGACATCGGCGGACGTGAACATT--TACACCTGCCCGGATGAGAGTTCTCTCAAAGGACCACTTAAGAAATCTGCCCCTCAGTTTCCCCTTGTATGAGGATTTCATGAGCAGATCGGGACtcttagaaaatatacaaataacatCCAGCTCTCACTGGACAAGC--AGAGAATTGAGTTAATTAAATGCTAAATAAGCTTTTGGTTTTTATATTGTTTGCATCCTTTTGCTCTCACTGAAG-----TCTTTTTTTGGGTTCAAAA

a score=30748
s chr3           94421323 945 + 160039680 TGTTAACTATTCT--ATTTGATATTGTACATAAACCAC---ACAATGCTTTTCTAGTACTAAAAGGCAGCATCCTTTG---ACAGGGAATT-TAATTAAATCAGCAT---------CAGAAACA-----GTTGCTTCCTGGTGTTTAGCCACTGCCTGAAACAGGAAGATGAACACAAACTGAAATACAGGTATCTTTTCCTTGATTCTGAGAC--AGTGAATTCCCCAGTATTTAGACATATTCATATGCTCAATTATATAATTCTAAATATAAAACCA---TTCAGTAGGT-----GATG----CCTCCATCTTTGTGGAACATTGAACATTACTAATTAAGTCCAATCCTATTTTGAGAAAGGAAGAACAGTGGAGGTATTTATGCATCTGGAAGTGTTATT-----TTTAAGAAGGTAACTTCCAGTTTACTACAAGTCACTTTGACTTAGT---AAACTGTCTGATAAGGATGTTGTTATGTTACTATCTGTAATTATGATCTGTGTTATGGTGAATGA-----ATTAAATTA-------------AAAGCCATGAGACATTT--GTTTTGTAATAAGGCAGTGGAATGACT--TGTTAATGGCCTTTTTAAGATAAGCTATTAGGTCTGCCCTTTCTCCCTTCTTCTTCtttttttttaattttatttttttagttaggtattttcttcatttacatttcagatgctatcctaaaagtcccccatatcctccccccttccctTCTTCTTAATACCAGTGAAGAT-TCTTCCACCCACGGATGTATTTTTTGGGATTCTCCAAATACTCCATCAGTGTATCATTTCCC-AGATGATGCCTTTGTTTTTGTTGGCATCTGTGTAAGAGACTCCAGCAGCCTAACCTG----CAGCCCAGGCAGACCATGGGAGTTTGGGCCAGTCTTATGCTTGCTTCCCTT-TCCACAGTGTAGCACTGGGCACACTTCTGAACAAAAAATCTTCTTGTCTTTCTCAACATCACCCATTTTTAA
s HiC_scaffold_1  5960641 888 + 233722169 tgttaaatattctttatttggtATTATACATACACCACGGTAAAATGCCTTTCAGTAAGTAAAAGGCAGCACTTTCTAGATACAGGGAATTCTAATTAAATTGGCATAGTCGATACCAAAAATATAGACATTGCT-CCTTGTCTTCAACCACTCCCTTTAACAGGCTAATAAGCACAAATTGAAACAAGGGAGTCTTG--CTTGGTTTTGAGAATAAAGGGTTTCCCCAGTATTTAA--------------TCAGttaaataaatctaaatataaaatcaatCTTCAGTAGGTTTTGAGATGACATTCTTAAGTTTTGTGAAAAGTCAAATATTACTAATCAAGTGCAACAATgtatttagaaaggaaaaacagtgatAGTATTTACTGAACTGGAATTACTATCAATGCTTGAAAAAAATA---TCCATTTAACTACAAGCCAATTTTACTTAAATCAGGACCGTCAAACAAAAATATT------CTGCCAGCC--ACTCACAACCTGAATTCTGGTGTATGAGACCTATTAAATTATAGTACACATAAAAAAGCCATAAgacatttctgttctgtaataaA-CAAGACAGTGACTGTTATTAGTAACCTTTTCGAGATAAGCTATTAAGTCGGCCCTTTCTCCCCTCTTCTT-----------------------------------------------------------------------------------------------------GATGCCAGtgaaatcatttttgtttcaGGGATGTATTTCTTGGGATTCTCCAAATCCTCCATCAGTGTATCCTCTCCCCAGGTGATGCCTTTGTTCTTGTTGGTATCTGTGTAAGAGAATCTAGGAGACTGACCTGTCTTcctcccaaacagaccatggagATTTGGTCTGGTCTTGTGCTTGCCTCCTTTCtctacagtgtggcactgtgcACACTTCTGTAC-AAAAATATTCTTGCCTTTCTCAACATCAGCCATTTTTAA

a score=25638
s chr3           94421336 932 + 160039680 ATTTGATATTGTACATAAACCACACAATGCT-----TTTCTAGTACTAAAAGGCAGCATCCTTTGA--CAGGGAATT-TAATTAAATCAGCATCAGAAACA--------------GTTGCTTCCTGGTGTTTAGCCACTGCCTGAAACAGGAAGATGAACACAAACTGAAATACAGGTATCTTTTCCTTGATTCTGAGACAGTGAA----TTCCCCAGTATTTAGACATATTCATATGCTCAATTATATAATTCTAAATATAAAAC--CATTCAGTAGGT-----GATG----CCTCCATCTTTGTGGAACATTGAACATTACTAATTAAGTCCAATCCTATTTTGAGAAAGGAAGAACAGTGGAGGTATTTATGCATCTGGAAGTGTTAT-----TTTTAAGAAGGTAACTTCCAGTTTACTACAAGTCACTTTGACTTAG---TAAACTGTCTGATAAGGATGTTGTTATGTTACTATCTG-TAATTATGATCTGTGTTATGGTGAATGA-----ATTAA----------------ATTAAAAGCCATGAGACATT--TGTTTTGTAATAAGGCAGTGGA-ATGACTTGTTAATGGCCTTTTTAAGATAAGCTATTAGGTCTGCCCTTTCTCCCTTCTTCTTCtttttttttaattttatttttttagttaggtattttcttcatttacatttcagatgctatcctaaaagtcccccatatcctccccccttccctTCTTCTTAATACCAGTGAAGAT--TCTTCCACCCACGGATGTATTTTTTGGGATTCTCCAAATACTCCATCAGTGTATCA-TTTCCCAGATGATGCCTTTGTTTTTGTTGGCATCTGTGTAAGAGACTCCAGCAGCCTAACCTG----CAGCCCAGGCAGACCATGGGAGTTTGGGCCAGTCTTATGCTTGCTTCCCTT-TCCACAGTGTAGCACTGGGCACACTTCTGAACAAAAAATCTTCTTGTCTTTCTCAACATCACCCATTTTTAA
s HiC_scaffold_1 33955181 859 + 233722169 ATCTGAAATTATAGATCAACTATAAAATGTGAGAAATTTTAAACAGTAAAAGGCAGCATTTTTTGATACAAGGAATTCTAATTAAATTGGCATCATCAAGACCAAAAATATAGACATTGCTTCCTTGTCTTCAAACACTCTGTTTAACAGACTAATAAGCACAAATTGAAACAGAGGAGTCTTG--CTTGGTTTTGAGATAATGAAGGATTTTCCCAGTATTTAA--------------CTGGTTATATAAAGCTAAATATAAACCAACATTCCTTAAGTTTTGAGATGACATTCTCAATTTTTGTGAAAAGTCAAACATTACTAATCAAATCCAACCATGTACTTAGAAAGGGAAAACAGTGATAATATTTACTGAATTGGAATTAGtatcaaaacttgaaaaaa------tCCATTTAACTGCAAGCCAGTTTTACTTAAATCAGGactatccaacaaaaatatt---------CTGTCAGCTACTCATGATCTAACTTCTGGTGTATGAGATGTATTAAGTAAGTTATGGTACACATAAAAAGCCATGAgacatttctgttctgtaataaGGCAGTGACTATTACTCATTAGAAGCCCTTTTAGGGTAAGTCGTTAGATctgtcctttc-----------------------------------------------------------------------------------------------------tcccttcttcttgatgtcagaaaagataatttttgtTCCAGGGATG---TTCTTGGGATTCTCCAAATACTCCATCAACTTACCCTTTTTCCCGGTGAT-CGTTTATTCT--------------TAAGAGAATCCAGCAGCCTGATCTGTCTTCCTCCCAAACAGACCATGCAGATATGGCCCAGTCTTGTGTTTGCCTCCCTTCTCTACAGTGTGGTACTGGGCACCCTTCTGTAT-GGAAATCTTCTTGCCTTTCTCAACATCACCCATTTTTAA

a score=6894
s chr3           94453134 320 + 160039680 aaaaagccagacAATGTAAGTGATTAAGCTGCTTCTTCAGGAAAACACCAAGTAGCGGATGATGCAG---GTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGGGGGGGGGCAGGATTAAGAGGCCGCGGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGGCAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAG
s HiC_scaffold_1 92989761 238 + 233722169 AAAGTgctaaacaaa--aaatatttgggCTTTTTCATCTGGGAAACACCAAATGGCAGATGACGCCACCAGTGCAGCAGAGGGACTTGGAGGCCCTGGGGG--------------------------------------------------------------CCCAGGCCAAGGCCACAGCATTTGCAG-------------CAT-----TAATGCTGAGGACAATAAG---ATTCCTATGACCAAACTGGGATGGCTGTTCAAGGACATGAAGATCAAGTCTCTGGAGGAAATGTACCACTTCTCCTTACCCATGAAGGAG

a score=26399
s chr3            94453157 961 + 160039680 TTAAGCTGCTTCTTCA--GGAAAACACCAAGTAGCGGATGATGCAGGTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGGGGGGGGGCAGGATTAAGAGGCCGCGGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGGCAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCTGAGATCATTGACTTTTTCCTGGGTGCATCCCTAAAGG------TTATGAAAATCATGCCAGTGCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGCCATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCCGTGCCCAAGAAGCTCCTGATGATGACCGGTATAGATGACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACCTGACCCCCGACCTCTGGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAG----TGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAAT-ACATGAACTAAGTCTgatagatagatagatagatagata
s HiC_scaffold_1 161823483 737 + 233722169 ttAAATAGCTTCTTCCTTGGGGAACAACAAAT---GGATCACACCTGTGCAGTGGGAGGGACTAAAGCACCAGAGG---------------------------------------------------------CCCTGGCC----TGGAGTCTTTGGCAGGGGCCA------TTGGGATCGCAGCAGGGAGGCCAATGACA-GGAGTAAATTCCTGTTACCTAACTGGGTGGGCTGGTCAAGGACATAAAGATGAAGTCCCGGGAGGAAATCTGTATCTTTTCCTTACCCATCAAGGAGCCTGAGATGACTGACTTTCCCC-GGGTGCATCCCTCAAGGATGAAGTTCTAAGGATTAGGCCTGTGCAGAAGCAAACTCCTGCTGACCAGTGGACCAGGTTCAAGGCACCTGTTGCCTTTGGGGACCACAATGGTCACGTGGGTCTGGGTGTGAAGTGTTCCAAGTAAGGAGCCACCGTCATTCAGGAGGCCATTGTCCTGGCCAAGCTCTGCA-CACCCCCGTGCCAAAAGGCTACTTAGGGAACAAGACTGGCAAGCAGCACACGGTCCTTTGCAAG--GTGATGTGCCACGGTGGCTCT------GTACATCTGACCCTTGCCCC--------------------------------------------------------------------------------------------------------------------------------------------------AGAGCCACCTGACCC-------CTGGAAAGAGACTGTGTTCACCAAGTCTTCCTGCCAGGAATTCCCTGAGCATCTTGAGGAAACTTACACCAGAGTCTCTGTCTGGAGGACTCAAGCTCCAGCAGTAGCTACAACATAAAGGTttttatacaagaaaaataaaatgaattaaatctg---GATGGAGGGGAGCATAAATA

a score=33597
s chr3            94453161 913 + 160039680 GCTGCTTCTTCAGGAAAACACCAAGTAGCGGATGATGCAGGTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGGGGGGGGGCAGGATTAAGAGGCCGC---GGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGGCAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCTGAGATCATTGACTTTTTCCTGGGTG-----CATCCCTAA------AGGTTATGAAAATCATGCCAGTGCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGCCATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCCGTGCCCAAGAAGCTCCTGATGATGACCGGTATAG--ATGACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACCTGACCCCCGACCTCTGGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGA
s HiC_scaffold_1 224721778 841 + 233722169 GCTTCTTATTTGGGAAACCACAAAATGACAAATGACACTGGTACAGCAGGAGGCCCCAAAGG-----GTGGATGTGGGAGGCCA-----CAGAGGCTTCCAAGGAGGCTTGGGCAGTGGCCTTCAGGG--CCTCGGGAATGGACATGGCAGGAGCTGAGG-CTAGGCTGTGGGGCTCGCAGTGGCAAGACCAAGGACA----GCGGATCCCTGTCACCAAGCTGGCCCAGCTGGTCAAGGACATGCAGATCAGGTCCCTGGAGGGCACTGGCCTTCTGTCTTTGCCCACCAAGGAATCTGAGATCCTTGGGCTTTGGGTGGGGGGGGAGCATCCCTCAGGAATGAGGCTCAGGAGATCACAC-AGTACAGAAGCAGACTCGTGCCGGCCAGTGGACCAGGTTCAAGGTATCTGTCGCC-CAATAGACCACAGTGGTCATGTTGGTTTGGGTCTAAAGTGCTCCAAGAAGGTAGCCATTGCCATCCGAGGGTGCACCATCCCAGCCAAGCT----GTCACCCCTGTGTGGAGAAGCTACCAGGGAAACAAGATGGGCAAGCCCCGCACCGTCCCTTGCAAG--GTGACCAGCTGCAGGGGCTCTGTGCTG-----------TCCTACTCCCAGAGGC----------------------------------TTCTGATGGTGGC----ACAGCTATGACTGCTGTATTCCTGTCAGGGTGTGCGCTGCTGCTCAGGGCAACTTTGCCAGGGATACCAATCGTGTCATTTCCCAGCTCTACAGCTACCTGACTCCCAGCCTCTGGAAAGAGACCTTGTTTACCAAGTATCCCTA-CAGAAATTCACTCA-CATCTTATAAAGACCCATGCTAGAGT-----------CCCTGCTCCAGCAGTAGCTGCAACAC-AGGGTTTTTATACAAGA

a score=33030
s chr3            94453165 926 + 160039680 CTTCTTCAGGAAAACACCAAGTAGCGGATGATGCAGGTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGG----GGGGGGGCAGGATTAAGAGGCCGCGGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGGCAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCTGAGATCATTGACTTTTTCCTGGGTGCATCCCTAAAGGTTATGAAAATCATGCCAGT---GCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGCCATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCCGTGCCCAAGAAGCTCCTGATGATGACCGGTATAGATGACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACCTGACCCCCGACCTCTGGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTC----ACTGATCATCTTGTGAAAACCCACACCAGAG----TGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAATACATGAACTAAG
s HiC_scaffold_1 201775508 859 + 233722169 CTTCCTCAGGAAAATACCGTATGG-GGATATCACCAGTGCCCCAGGAGGGACCTGAGAGCCAGGCATGGGACACTAGAGGAGC----------GTCTCTGGAGACTTCAGCATCAGCCT---------------CGAGGTTGTGGGTGCACTAGGGGCCGGGCCTGTGAATTTGA-GGTGGAAAGGTCCAGGACA--GAGTGGATCCCCACCACCAAGTAGGGCTGGCCAGTCAAGACTATGAAGAT-ATGTCTCTGGAGGAGATTTATCTTTTCACCTTGCCCATCAAGGAGTCTGAGACTATTGATTTTTTCCTGGCTACATCCTCAAAG---------ATGATCCCAGTCCTGCAGAATCAAATTTGTGCTGGACAGCAGACCAGGCTCAAGGTGTTTGTTTCTCCTAGGGTCCCCAATGGTCATGCTGGTCTGGGTGTAAAGTGCTCCAAAGAGGTAGCCACTGGCCTCTGAAGGGCAGTGATTCTAGCTGAGCTCTCCATTGTCTGTTTGCAGAGAAGCTGCGGGGGGAACAAGACCAGCAAGCCCCGTACTGTGCCTTGCAAG--ATGAGGGGCTGCTATGTCTCTGT------------------------------------CAGCATCTAAGC-CCCATGCCCAGGCTGCCTCT-CTGATGGCT-GCACTGAAGCCTGCCATACCTCTGCCAGGGGCTGCACAGCTCCTCTGGGAAGCTTCACGAAGGCCACCATTGATATCATCTCCAAGACATCCAGCTGCCAAACCCCTGACCTCTGGAAAGAGACTGTGTTCACCAAGTCTCC-CAGTAGGAATTTGCAGACAGACCATCTTGTAAAAGTCCACACCGGAGTCTCTGTCCAGAGGCCTCAGGCTCTAGCTGTAGCTACAACAC-AGGGCTtctacatgagaaaaataaagtgaataag

a score=7146
s chr3           94453946 162 + 160039680 GGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAG--TGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAAT-ACATGAACTAAGTCTgatagatagataga
s HiC_scaffold_1 92989995 162 + 233722169 GGAGAGAAACTGT--TCACCAAGT-TCCTTACCAGGAATTTACTGATCAATTTGTGAAAACCCACACCAGAATCTCTCCCGAAGACTCAAGCTCTAGCAGTAGCTACAACATAAAGCATTTTATGTAAGGaacacaaaatgaatgaaatctgtCAAACATTTGGA

a score=16369
s chr3            94643036 550 + 160039680 acgaatgagaaaaaaatggagaCACCCTCTTTTTGT------AACAGCCTGTGGTAACCTGTTGAA-------------------------AATGGTTTACTACCCTCTGGATCCAGAAATCCCTACACAG-TTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTTACTTTAAGAATAC---TGAAGCAGTCCAGACCACCTGAAGTTTGTTTATC-AAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTT-CCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCACAGCGGGGCTGGACA--GGATTGTTTGCTAAAAACACTGCTAAAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAAAGGTTTAGCTATAGATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCCAGTAT----CAGACTCAGGATCTTATTAATCCATATATGAGGTGCCCTGCCACATGGAGTTGACCATCACTG-AAAAGGAATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAA
s HiC_scaffold_1 176819618 581 + 233722169 accaaaaaaaaaaaaaaagttacagattTTTGTCTTCATATAAACGGCCTGAAGTGAACTGTGAAACCAGTGAGGCTTCTCCCTGGTAAGTAGGGATTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCA-------CCAAG-------TATCTGAAGGGTGACTCTTGAAAGAAGCAGTGTGTGTCATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTGCTTAAGCCAAATGAGGGCTAGACACAGGATTGAGACCCCAAAAGAGTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAGA--CTCTAGTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCTGAGCTCGTGATCTAACTAATGAATACCTGAGTTCCCCTGCCACATGGAGATAATCCTTATTGAAAAAGGAACAAATAGTTCCTAGGTCATAGGAGGAGGTTGCATCAAACACAA

a score=4483
s chr3           94666737 264 + 160039680 gttgaaagccactgCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGAGGGATGCTACTCTAGAGATGGATGC
s HiC_scaffold_1 25801651 264 + 233722169 GCTGGTAGGGGCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGC

a score=4902
s chr3           94666749 252 + 160039680 tgCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGAGGGATGCTACTCTAGAGATGGATGC
s HiC_scaffold_1 25801701 250 + 233722169 TACTTCAGAGGGGACTTCT--CCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGC

a score=4356
s chr3           94666758 235 + 160039680 GAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGAGGGATGC--TACTCTAGAG
s HiC_scaffold_1 25801693 234 + 233722169 GGAGGATG-TACTTCAGAGGGGACTTCT--CCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAG

a score=4592
s chr3           94666761 244 + 160039680 GGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGAGGGATGCTACTCTAGAGATGGATGCCCTC
s HiC_scaffold_1 25801729 244 + 233722169 GGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTC

a score=3905
s chr3           94666783 218 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGAGGGATGCTACTCTAGAGATGGATGC
s HiC_scaffold_1 25801661 218 + 233722169 GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGC

a score=16874
s chr3            94737212 619 + 160039680 aagtaggaaaaaattaaaaaaaaaaaaaaggtagatgccatacgagttcatttatgtattattcttgaatgaatgagaaaaaaaatggagaCACCCTCTTCTTTTCACAGCCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAG-TTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATAC---TGAAGCTGTCCAGACCACCTGAAGTTTGTTTATC-AAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTT-CCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCACAGCGGGGCTGGACA--GGATTGTTTGCTAAAAACACTGCTACAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCCAGTAT----CAGACTCAGGATCTTATTAATCCATATATGAGCTGCCCTGCCACATGGAGTTGACCATCACTG-AAAAGGAATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAA
s HiC_scaffold_1 176819606 593 + 233722169 aaaaagaaaaagaccaaaaaaaaaaaaaaagttacagattTTTGTCTTCATATA---AACGGCCTGAAGTGAACTGTGAAACCAGTGAGG----------CTTCTCCC------TGGTAA---GTAGGGA----TTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCA-------CCAAG-------TATCTGAAGGGTGACTCTTGAAAGAAGCAGTGTGTGTCATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTGCTTAAGCCAAATGAGGGCTAGACACAGGATTGAGACCCCAAAAGAGTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAGA--CTCTAGTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCTGAGCTCGTGATCTAACTAATGAATACCTGAGTTCCCCTGCCACATGGAGATAATCCTTATTGAAAAAGGAACAAATAGTTCCTAGGTCATAGGAGGAGGTTGCATCAAACACAA

a score=8676
s chr3           94766259 644 + 160039680 aaagccactgCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801603 642 + 233722169 AAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=10211
s chr3           94766266 655 + 160039680 ctgCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801592 653 + 233722169 CTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=9371
s chr3           94766267 546 + 160039680 tgCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801701 544 + 233722169 TACTTCAGAGGGGACTTCT--CCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=9095
s chr3           94766276 573 + 160039680 GAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801693 552 + 233722169 GGAGGATG-TACTTCAGAGGGGACTTCT--CCTGCAGCTGGAGGCTGCACTTGAGAGGGG-ACTTCTC-----------------CTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=7966
s chr3           94766279 516 + 160039680 GGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801729 516 + 233722169 GGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=9567
s chr3           94766301 584 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801661 584 + 233722169 GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=10040
s chr3           94766301 656 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCT
s HiC_scaffold_1 25801591 654 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTC--TTCAGCTGGTAGGGGCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=8997
s chr3           94766319 656 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCT
s HiC_scaffold_1 25801591 654 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=10352
s chr3           94766337 656 + 160039680 GCTGCTCTAGAAAAGGATGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCT
s HiC_scaffold_1 25801591 654 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCATCAGGGATCTCTCCAGCAGCGGGAGGCTGTACT

a score=9654
s chr3           94766354 639 + 160039680 TGCCGTTCTAGAGATGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGA-GAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCT
s HiC_scaffold_1 25801578 631 + 233722169 TGCCGTTGTAATG------GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGGG---CTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGCTGTACT

a score=9205
s chr3           94766391 614 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGC
s HiC_scaffold_1 25801591 612 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGGGACCTCTCCTGCAGCTGGAGGC

a score=9593
s chr3           94766409 610 + 160039680 GCTGCTCTAGAGAGGGATGCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 606 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGGG--GACCTCTCCTGCAGCT

a score=9034
s chr3           94766427 590 + 160039680 GCTGATCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCT-CTTCTGTGG
s HiC_scaffold_1 25801591 589 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCTGTACTTCAGTGG

a score=9247
s chr3           94766445 566 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTT
s HiC_scaffold_1 25801591 564 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCT--TCAGCTGGTAGGGGCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTT

a score=9260
s chr3           94766463 585 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCT-CTTCTGTGG---TTCCACATGAGTCTGGGGCCTAGCACTCCAG
s HiC_scaffold_1 25801591 586 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTACTTCAGAGGGGACCTCTCTTGCAGCTGGGGGCT-GTACTTCAG

a score=8922
s chr3           94766481 538 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 534 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATTTCAGAGGG--GACCTCTCCTGCAGCT

a score=8578
s chr3           94766499 512 + 160039680 GCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTT
s HiC_scaffold_1 25801591 510 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTCTATT

a score=7733
s chr3           94766505 512 + 160039680 CTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCC-CTCTTCTGTGG
s HiC_scaffold_1 25801567 505 + 233722169 CCAGAGGCCTCTGCCGTTGTAATG------GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGG

a score=8411
s chr3           94766517 502 + 160039680 GCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 498 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTTCTTCAGAGGG--GACCTCTCCTGCAGCT

a score=7666
s chr3           94766553 466 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 462 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTTTCCTGCAGCTGGAGGCTGTACTTCAGAGGG--GACCTCTCCTGCAGCT

a score=6609
s chr3           94766589 430 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 426 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGG--GACCTTTCCTGCAGCT

a score=6362
s chr3           94766607 398 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGC
s HiC_scaffold_1 25801591 396 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGC

a score=6331
s chr3           94766625 394 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 390 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGG--GACCTCTCCTGCAGCT

a score=5822
s chr3           94766643 362 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGC
s HiC_scaffold_1 25801591 360 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGAGACCTCTCCTGCAGCTGGAGGC

a score=5407
s chr3           94766661 358 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 354 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCT--TCAGCTGGTAGGGGCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGA--GACCTCTCCTGCAGCT

a score=5335
s chr3           94766679 326 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGC
s HiC_scaffold_1 25801591 324 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGC

a score=4885
s chr3           94766697 322 + 160039680 GCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGCCCTCTTCTGTGGTT
s HiC_scaffold_1 25801591 318 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGG--GACCTCTCCTGCAGCT

a score=4376
s chr3           94766715 290 + 160039680 GCTGCTCTAGAGATGGATGCTGTTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGAGGGATGCTGCTCTAGAGATGGATGCTGTTCTAGAGAAGGATGCTGCTCTAGAGATGGATGC
s HiC_scaffold_1 25801591 288 + 233722169 GCTGCCTTAGCCAAGGTCCCCTCTGCAAAGCTGGGTTCTGCTATAGCTGTGGCCTCTTCAGCTGGTAGGG--GCTGTACTTCAGCAGGGACCTCTCCTGCAGCTGGAGGATGTACTTCAGAGGGGACTTCTCCTGCAGCTGGAGGCTGCACTTGAGAGGGGACTTCTCCTGCAGCTGGAAGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGCTGTACTTCAGAGGGGACCTCTCCTGCAGCTGGAGGC

a score=3952
s chr3           95065804 71 + 160039680 CACTCACCCCATCATGGACCAGTGCTTTCCAAGAGTGCTCCAACTTCTTAACAAACCTGCCAAGAAAAATG
s HiC_scaffold_1 61040809 69 + 233722169 CACTCACCCCATCATACACAAGAGCTTTCCAGGAATGCTCTAACTTCTTCATTAACCtg--aatataaatg

a score=13617
s chr3           95070689 342 + 160039680 AGAGGAAAATATAGCAA---------CTCACCAAACAGTCACGCTGTAGAGTCTTACACAGAGCACTGTACATGTCAGCATCCAAAAATAGGCCGTCAGGGATATCTTGTAGGAAGTCCAGGTCTTTAAAGGTGGGGAGAGTTTTCTCTCGTTCTTTCTGAGAAGCCCGCCGCTTGTAAGTTGAACCCTTCAGGTCATATTTCATATGCATTTTGACTGACCGAGGCAAGAGATTGTTCATCACCACAATTCGTATGTTCTTGCCGCCTGCTTGCACACAGTACAATCCATAAAATTTGGGCAGCAAAGTACGAGGGTTTTGGTTAAGATTCTAAA----GCATAAAAGGAAAAA
s HiC_scaffold_1 61065738 355 + 233722169 AAAGGAAATGACAGCAAGGACACTTCCTTACCCGGCAGTCTCTCTGGAGTGTTTTCATGAGCGCATTGTACGTTTCTGTATCAAAATACAACCCTTCATGCATGTCTTGGAGGAAATCTAAGTCTTTAAACGTGGGGTTGGACTTTTCCCTCTCCTTCCGGGATGCTCTCCGCTTATAGGTGGAGCCTTTCAAGTCGTAGGTGAAGTGCATTCGCATGGAGCGCGGCAAGACGTTGTTCATCACCACAATCCTGATGTTGATGCCCCCCGACTGCATGCAATACAGGCCATAAAACTTGGGCAAAAGAGTCCTGGGATTCTGGTTCAAATTCTAGAaacgggggaaaaaaaaaaa

a score=10731
s chr3           95071884 197 + 160039680 CTCACCATGTAGTATCCTGGAAGCAACTTCTGCAGAAATTCTGCTTCTTTATGCTGGACGGTCTTAATGATGAATTCATCATCACTGGACACATAGAAGAGGGAACCACTAGCTCCAGAATTGGAGAGTTCAATCAATGGCTCACTGCAAAGGGAGTACTGAAAATGAGAGAAGACATTAA-----GAGTCAAACAGAGTCA
s HiC_scaffold_1 61069838 200 + 233722169 CTCACCATGTAATACCCTGGCAGCAGCTTCTGGAGGAATTCCGCTTCTTTATGCTGAACGGTTTTGATGATAAACTCATCATCACTGGTCACAAAAAACAAGGACCCACTGGCTCCAGGGTTGGACAGCTCTATGAGCGGCTCACTGCAGATGGAATACT--AAACGAGGAGATGAATCAATATTTTAGTTAATCATAATCA

a score=7609
s chr3           95072397 146 + 160039680 CTTACCAAGTAATCATCAGGCCGGATGCCAAAGAGCTCTCTGAAGTAACGGAAGGCAACAGGCGCATAGGTCTTGAATCGAAAGTCATTGTAATGGTGAGCCGGTGTCAGGTTGCTGCCTTCACTAAGTGGTT-AAACATAAAGAAA
s HiC_scaffold_1 61078793 145 + 233722169 CTTACCAAGTAATCATCAGGCTTGATACCAAAAAGTTCTCTGAAGTACCGGAATGCCAGTGGAGCATATGTCTTAAATCTGAAGTCTGGGTAGTGATGTGCTGGGGTCAGATTGCTCCCTTCACT--gcagttaaaatattaaaaaa

a score=6741
s chr3           95073970 161 + 160039680 TCAGAGACATTGATCTCTGTACCTGGGGAAAAAGATGCTCTCCACCACGTAGAAGTCTTGCATGAGGACATCACGCTCTGGTTTGGTGCTCAGGCTGCCCACAGTGTGAGTGATGCCTAACTGGATGGCACCTTTCAAGGCTGATGAAGTTGTCT---AAGAAA
s HiC_scaffold_1 61090952 164 + 233722169 TCACAAACACAAAGGTTTTTACCTGGGTAGGAACACACTTTCCACCACATAAAAGTCTTGCATAAGAACATCGCGTTCCGGCTTGGAAGTGAGATTCCCCACTGTGTATCCTATTCCCAGCTGAATAGCACCTTTAATAGCAGATGATGCAGTCTGCAAAGAAA

a score=4905
s chr3           95125545 146 + 160039680 GGGGCCACCATGTCAT---CCTATCAGAAGGAACTGGAGAAATACAGAGACATCGACGAAGATGAGATCCTAAGGACCCTGAGCCCTGAAGAGCTAGAACAGCTGGACTGTGAGCTACAAGAAATGGATCCTGAGGTAGGAGCACAGGC
s HiC_scaffold_1 44321992 149 + 233722169 GAGGCAGCCATGGCCCTCCCCTTCCAGAAGGAGCTGGAGAAATACAAGAATCTCGATGAGGATGAGCTCCTTGGCAAGCTGTCTGCAGAGGAGCTGCAGCAGCTGGAAAATGTGCTCGATGACCTAGATCCCCAGGTTGGTGTTTGGGC

a score=5069
s chr3           95125817 161 + 160039680 AGAACATGCTCTTGCCAGCTGGCCTGAGACAACGTGACCAGACAAAGAAGAGTCCAACAGGGCCACTGGACAGAGATGCCCTATTGCAGTACCTGGAGCAACAGGCGCTAGAAGTCAAAGAGCGTGATGACTTGGTGCCCTACACTGGCGAGAAGAAGGGT
s HiC_scaffold_1 44387529 161 + 233722169 AGAACGCCCTTCTACCTGCAGGATTCCGGCAGAAGAACCAGACCTCCAAGGCTGCCACTGGCCCGTTTGACAGAGACCACCTGCTCTCGTTCCTGGAGAAGGAAGCACTGGAGCACAAAGACAGGGAGGACTACGTGCCCTACACCGGGGAGAAGAAAGGT

a score=4709
s chr3           95125829 153 + 160039680 TGCCAGCTGGCCTGAGACAACGTGACCAGACAAAGAAGAGTCCAACAGGGCCACTGGACAGAGATGCCCTATTGCAGTACCTGGAGCAACAGGCGCTAGAAGTCAAAGAGCGTGATGACTTGGTGCCCTACACTGGCGAGAAGAAGGGTATGG
s HiC_scaffold_1 44323112 153 + 233722169 TGCCTGCCGGGCTCCGGCAGAAAGACCAGACGCAGAAGGCGGCCACTGGCCCGTTCGACCGCGAGCACCTCCTCATGTACCTGGAGAAGGAGGCCCTGGAGCAGAAGGACAGGGAGGACTTCGTGCCCTTCACTGGAGAAAAGAAAGGTGAGG

a score=5060
s chr3           95127564 158 + 160039680 CCTTTCTGCTC----TGTTCCTCATCA--GGTGTGGTACAGCCTGACAAGTATAAGCCAGTACCAGATGAACCTCCAAATCCCACAAACATTGAGGAGATGCTAAAGAGGGTACGGAGTAATGACAAAGAGCTGGAGGAGGTGAACCTCAATAATATCCAGGTA
s HiC_scaffold_1 44398935 164 + 233722169 CCACTCTGCTCCTTGTGTTTATCATCACAGATGTGGTGAAAGGTGAAAAGATTGTCCCCGTATTTGATGAGCCACCAAATCCAACCAACGTCGAGGAGAGCTTGAAGAGAATTAGGGAGAACGACACCCACCTCGTGGAAGTCAACCTGAACAATATAAAGGTa

a score=4380
s chr3           95127585 137 + 160039680 CAGGTGTGGTACAGCCTGACAAGTATAAGCCAGTACCAGATGAACCTCCAAATCCCACAAACATTGAGGAGATGCTAAAGAGGGTACGGAGTAATGACAAAGAGCTGGAGGAGGTGAACCTCAATAATATCCAGGTA
s HiC_scaffold_1 44330753 137 + 233722169 CAGACGTGGTGAAAGGTGAGAAGGTCAAGCCATTATTTGAGGAACCGCCCAACCCCACCAACGTGGAAGTCAGCCTGCAGCAGATGAAGGCCAACGACCCCAGCCTGCAGGAAGTGAACCTCAACAACATCAAGGTA

a score=5536
s chr3           95128255 162 + 160039680 CCCTACCACCCAGGCGGTGGCTGACATGTTGCGTGAGAACCGCAGTCTCCAGAGCCTGAACATTGAGTCTAACTTCATCAGCAGCACAGGGCTCATGGCTGTGCTAAAGGCAGTTCGGGAAAATGCTACTCTCACTGAGCTCCGTGTAGATAACCAGGTTAG
s HiC_scaffold_1 44406421 162 + 233722169 CTCTCCTCCCCAGGCTTTCGCCGACATGCTCCGGGTAAACAGAACTTTGAGGAGCTTGAACATGGAGTCCAACTTCATCACAGGGGCCGGAGTTCTGGCACTGATCGACGCCCTTCGGGAGAATGAGACCCTGGTAGAGCTCAAGGTGGACAATCAGGTCAG

a score=5151
s chr3           95128266 151 + 160039680 AGGCGGTGGCTGACATGTTGCGTGAGAACCGCAGTCTCCAGAGCCTGAACATTGAGTCTAACTTCATCAGCAGCACAGGGCTCATGGCTGTGCTAAAGGCAGTTCGGGAAAATGCTACTCTCACTGAGCTCCGTGTAGATAACCAGGTTAG
s HiC_scaffold_1 44340758 151 + 233722169 AGGCTTTTGCAGATATGCTGAAAGTGAACAGGACCTTGAAAAGCCTGAACATAGAATCCAACTTCATCACTGGCTCGGGCATCCTGGCTCTGGTGGAGGCATTGAGGGAAAACGACAGCCTGACAGAGATCAAGATTGACAACCAGGTGAG

a score=16751
s chr3           95139995 546 + 160039680 TCAGAGCTTGCCCTCGTCCAGCAGCTTCCGGAGCCCATCACAGATCTTGCCAAGGTGCTGAGTGAA--------GTCAGGCCCATAGAGGGCAGCCAGCAGGTCGGGGTCAGAGTAGTGATCAAACACGTGCCTGATGCGGTCATGTGACTTGGGTGTGAGGTGGTGCTCCACCAGCTCCAGCAGAATGTCCCGGCACTCGACGAGCAGACCTGCTAGCACGGCAGCCTCAAAGGTGAAGTCCACCTCACCGAAGCTAAGTGCGGTCATGGCGCCCTGCCGTAGCTTCTGACGAAATCGTGTAGCCAGAGCCAGCTCCCCAGGGCCAAAGCAGCCACTGCGGTGCAGCACAGCCACTTTAACCGCTACCTTGATGAGGTCTTTGATCACCCGCTGTGCCTTGGGCCGGCTGTGCGTGTATTCTTTGGACACGCGGTAAAGCTCGTCTAGCACCTCGCTGCTGGTCTCGTCGATAAAGAGATGCGCCACGGACCGACCAGCCATTTTACTCAGCAGCTTCTTCTCCGCTTGTAGTGCCAGACTCTTTGAGCTGAA
s HiC_scaffold_1 43703468 552 + 233722169 TCAGAGGACCTTCTCATCTAGCAGTTTGTTGATGCCTTCGCAAATCCTCTTGAGG--CTGGGCCTACCATCCCCATCTAGGCGATAGAGGGCGGAGAGGAACTCCACGTCAGCGAAGTGGTTGAAGACATGGTTGATGCGTCCATGGGTCCGAGGCGTGAGGTGCCGCTGCACTAGTCCATGTACCAGGTCCTGGCACTCGTGCAGCAGGGCGGAGAGCACGTTCCTGTCGAAGGTGTAGTCTACCTCGTAGAAGCTCACCATGGTCATGGCGGTCTGGTTCAGCTTCTTGCGGAGCTTCTCCACCGTGGCCACCTCCTCCTGGTTGAACTGGCTGTTCCGGTAGAGGATCCCGATTTTGATGGCCACCTTGATTAAGTCTTTCATGATCTTGTGGGCCTCCTTCTTGTTGTGGGTGTACTCTTTGGTGACTTTGTAGAGCTCGTCGAAGATCTCACTGCTGGTGTCATCAATCAACATGTTGGCCACCGATTTACTGGCTAGTTTGCTCAGGATCTTTTTCTGCGCTTGCAGGGCGAGGCTCTTCGAACTAAA

a score=5363
s chr3           95167990 113 + 160039680 TTCTCTAGGACGAATGCTACAACTACATCCGTGTTCTTGTTCCCTGGAACTCGCAGACACTTCTTGCCTGTGGAACAAATTCCTTCAGCCCTATGTGCCGCAGCTATGGGGTA
s HiC_scaffold_1 41172683 113 + 233722169 TTCTCTAGGACGAATGCCACAACTTCATCAAAGTGTTTGTTCCAAGAAACGACGAGGTGGTTTTCGTTTGTGGCACCAATGCCTTCAACCCTATGTGCAGATACTATAGGGTA

a score=4884
s chr3           95168798 110 + 160039680 TTTGCCTCAGAGCCACACTTTGTCTATGCGTTGGAGCATGGAGAGCACGTCTACTTCTTCTTCCGAGAAGTCTCTGTGGAGGATGCCCGCTTAGGGAGGGTAAGGAGCTG
s HiC_scaffold_1 41174336 110 + 233722169 tttctttcagAGCCACACTTTCTTCATGGCATAGAATATGGCAACTACGTCTATTTCTTCTTTCGAGAAATTGCTGTAGAACATAACAATTTAGGCAAGGCAAGTATCTG

a score=10394
s chr3           95169135 1363 + 160039680 ACGTGTGGCTCTCACTGTCTTCTCTCAGGTGCAG------TTTTCCAGGGTAGCCCGGGTATGTAAACGTGACATGGGTGGCTCACCTCGGGCCTTGGATCGCCACTGGACATCCTTCCTTAAGCTGAGGCTCAACTGCTCTGTCCCTGGGGACTCTACCTTCTACTTTGACGTCTTACAGTCCTTAACTGGGCCTGTGAACCTGCATGGCCGCTCCGCTCTCTTTGGGGTCTTCACTACTCAGACCAATAGGTTGGTACCCAGCATCCACACTCCCTTTTCATGCCTACTGAGGAAGCTTCAAGCAAGGCCAGTTTGCTGCCCTGGCCACCCCCCCCCCCCCGAGGCTGCCCCTCTAATGTGGTGCACAGAGGGCAGCTATCACTTCTTACCTGGCAGGAGCTGTGCAGTCCCTGTCAACATCTACCTTGCATCTTTTCTGGCTCCCTCAGCATTCCTGGGTCTGCAGTCTGCGCCTTCTACCTAGATGATATTGAACGTGGCTTTGAGGGCAAGTTCAAGGAGCAGAGGAGTCTGGATGGGGCCTGGACTCCTGTGTCTGAGGACAAGGTCCCCTCACCCAGGT-------------------ACCCAGTATGGAGTGGCTTTTGGGGGC----AGAAGCA-------------------ATTCCTGCTCTTAATGTT-------GGGTTGTAAGGAGGTCACTGTGGCCAAGGACAAGC--------------ATGGGCTGGACTAAG-----AGGCTGCAACAGGGGAGG------GAAGAAATGGTGCAAG---TGTGCCTG---CTTGCAGGGAAGTAAAGGT------------------AGCCAGC-CATGTTTGAGAGCTTGGAGGTGGCGTGGGGGGCAGGGGGCGGGGCACATGGCTTAACATCAGTTCTCTGCCCTAAGGCTGCCCCTTCCCATGTGCCCACCAGGCCAGGGTCCTGTGCAGGTGTGGGTGCAGCTGCCTCGTTCTCCTCCTCTCAAGACCTACCTGATGATGTCCTGCTCTTCATCAAGGCACACCCGCTGCTGGATCCTGCTGTGCCACCCGCCACCCATCAACCGCTCCTCACTCTGACTAGCAGGTAATCACGCCTCCTGCCCTCGCCAAGCCCTTCTTTTTCTTGTGTGGTCCATGAGGCGAATCCCACTGGGGTGAG--GGCCTATGAAGCAGTAGGATGGGAGGCAGGGCATCTCGGTGCTCCTGGGAGTGCTCAAGCTTCATTAGACAAGCTGTCCTCACCTGAAG------------CCTGTCGCTCCAGGGCCCTGCTGACCCAGGTAGCTGTGGACGGAATGGCTGGTCCCCACAGAAATACTACTGTCCTGTTTCTTGGCTCCAACGATGGGACAGTGCTGAAGGTGCTACCTCCAGGGGGTCAGTCTTTGGGCTCTGAGC-CTATCGTCTTG---GAAGAGATTGATGCCTACAGCCATGCCCGGTGAGTG
s HiC_scaffold_1 41175135 1248 + 233722169 ACCTGTTGCT-TCACTTTTTTGTCCCTGG-GCAGGCTGTCTATTCCCGAGTGGCCCGCATCTGTAAAAATGACATGGGTGGCTCCCAGCGGGTCCTGGACAAACACTGGACTTCATTTCTGAAGGCTCGGCTTAACTGCTCTGTGCCCGGAGATTCATTCTTCTACTTCGATGTTCTGCAGTCTATCACAGACATCATACAGATCAACGGGGTCCCCACTGTGGTCGGGGTGTTTACCACGCAGCTCAACAGGTGAGGAC----------AGGTCCCT----------------GGGGCTTCGGAA-----------GTTGCTCTGAGCTCGATCACAGGACCAAGCCCAGGCCCCTaat---------------ccccagcctcttcccaACGGG-------------------------------TTTGCTTCTTTT---------GCAGCATCCCCGGTTCTGCAGTCTGTGCGTTTAGCATGGATGACATCGAGAAAGTATTCAAAGGGCGatttaaagaacagaaaactcCGGATTCTGTTTGGACAGCAGTCCCAGAAGACAAAGTGCCAAAGCCAAGGTAAAGGAAAAGTCAAGAAGGATTTTGCTTGGAATAAAATTCTGTGGCCACAGGAagcatccatccatctatccacacATCCATGCATGCATCCATCCCCAGAGAGCCGCAGGGCGTCCCTC----CTCAGGACAGTCCCTCTGTGACCCCTATGAGCTTTTCCCAGCCCACGGACTTGAACAGGGACAGCCTGCTGAAGGCAGGGTGGTAGCACTGTGCTTGGGTCCTGCAG-------ACTGTCTTCTCCACTTCTCCCTGATCCGGCACTTGTTCG-----CTGGACCCTCTGTGGG-----GGAGGTGAG----------------CAGTT----------AGGGGACGCCGTC-----TTCCTTTTAGGCCCGGGTGCTGTGCAAAGCATGGCCTCGCCGAGGCATACAAGACCTCCATCGAATTCCCCGACGAGACCTTGGCTTTCATCAAGTCCCACCCGCTGATGGACGCTGCTGTGCCGCTCATCGCTGATGAGCCCTGGTTCACCAAGA------------CACGTGTC-------------------------------------------------------AGGTGAGCTGGCGTGGGAAGCAG-------------AGGTGACCCCTG---CCCTGGGCATGCTGGGGTTC--TTGGTC---CCCTCCCCACCTGAGGGTGACTCAGCCACCTCCTCCCACAGGTACAGGCTGACGGCCATCGCTGTGGACCACACGGCAGGGCCCCACCAGAACTACACTGTCATCTTCGTCGGCTCTGAGGCTGGGGTGGTCCTGAAAGTGCTGGC----AAAGACCACCACCTTCTCTCTGAATGACAGCGTCTTGCTAGAAGAGATCGAAGCCTACAACCAGGCCAAGTAGGTG

a score=6574
s chr3           95188753 213 + 160039680 CTCGTCCCCTTCTGT-----CACCACTACAGCA----TCCACTTC--AGCTAC-----TTCCTCAACTACGGTGACATCAACTT--------------------CAACTCC---GTTGGTCTGCTGCTGAGCCATAGCCTCCAGCCTGAGCCGATACTGCTCGGCCTCCTGCTCTTTCTTGAGGAGCTGGTGTCTGTACTCCTGGGCTCTTCGGTTGGCCTCCTGGAGCTGTTGCTGCAGTAGCTCTCTTTC
s HiC_scaffold_1 43148868 252 + 233722169 CTCCTCCCCTCCTGTACTCCCACGGCTGCACCACGTGTGCAGTTCGAAGCTGCGTTCTTTCCTGACCCACAGTAAGATCCAGTCACAAGTCTGTCTCTATCAGACAGCTTCTTTGTTAGTCTGCAGCCGAGTCATAGCTTCCAGCTTCTGTCTGTAGGCCTCCGCTTCCTGCTCTTTCTTAAGAAGTTGCTGTCGGTATTTCTGTGCTTCTCGATTCGCTTCATCCAGTTGTTTCTGAAGAGCTTCTCTCtc

a score=8153
s chr3           95203728 199 + 160039680 ACCTGAAGCATGAC--CAAAATCTCAGTATTGTTTTTCTCCATTGCTATGTCAAAGGCAGACTTATCAAATTTGCTAAAAGCGTAGACATCAGCTCCATATTTGATAAGTAACTCGACGACATCCCGGTGATGGTGCTCTGTGGCCCAGTGCAGAGCTGTCATCTGCAGCATGTCCTTTGCGTTCACATCTGCACCACTCT
s HiC_scaffold_1 43163394 199 + 233722169 ACCTGTAGTATCTCTGCTAAATCTT--CATTTCCATTGTCTATTGAAATATCAAATGCAGTTTTACAAAATTTACTCTGCGTGTGTACATCAGCACCATATTTGATTAAAAGTTCCACCACTTCTTGATGATTGTGTTCCGTGGCCCAATGTAGAGCTGTCATCTTTAACATATCTTTTGCATTGACGTCAGCACCATgct

a score=8265
s chr3           95204666 145 + 160039680 CATGTCCATCAGCTGCAGCCATATGCAAAGGGGTCCTGTCCACTTTGGTCCGGGCATCCCTGCTAACGCCAGCTCG-AAGGAGCACTTCTGCTGTGGAATAATGACCATACTGGGCTG-CAAGGTGAAGCGGTGATGTTCCGAGCTG
s HiC_scaffold_1 43165024 146 + 233722169 CATGGCCCTCAGAGGCCGCCATGTGCAG-GGCGTCCGGTCCACTTTGGTCCTGGCATCCCTGCTCACGCCGGCTCGCAAGGAGCACCTCTGTGGTGGAGTAGTGGCCATACTGCGCTGCCCAGGTGCAGTGGAGATGTTCCCAGCTG

a score=7398
s chr3           95206458 117 + 160039680 TTACCCAGTCTGTGGTGAATGGAGCCCCATTTGCCATCAGTGTCCTCACTTCATCGTCTTGGCCTTTCCTTGCAGCTTCTAGCAGCCTCTTCCCCAAGTCCACCAGAGACATCTTAA
s HiC_scaffold_1 43169381 117 + 233722169 TTACCCAGTCTGTGGTGAAAGGAGCTCCATTTGCCATCAAAATACGAACTTCATCATCTTGACCTGCTCGTGCCGCTTCTAAAAGCTTCTTTCCCAAATCTACCAGGGACATCTAAA

a score=3625
s chr3           95302662 104 + 160039680 TACCTTCAAGGCTGTCCTCAGTTCCTGGGCATCAAATTGGGCTGCAGGCTGTAGGAGAGCCACCACGATTTTCTCCAGATTGCCAGAGAGCGCTGCCTGCAAGG
s HiC_scaffold_1 56692846 104 + 233722169 TACCTTCATGGCAGCGCGGAGTTCATCTGCATCCAACTGGGCTGGAGTTTTCAGCAGAGCCAAAACCACCTCTTCCAGATGCCCTGTGAGGGCTTTCTTCAGAG

a score=4980
s chr3            95327019 142 + 160039680 CCAATGCTAAAAGGAACTGCTTTTAACACAAAT----AGATAT------TCCCTGATTCTAGCCATGTAATGCCTTACACCACCTTGGGAGTCTGCCAGCTAGGATGGCCATCACCAGATGCAG--------CTTTGTACCTCCAGGGTTGTGAGTTAAA
s HiC_scaffold_1 120249079 154 + 233722169 CTAATGtcagaaagaccaa-----aacacaCATGTGCAGATGTGCAGCCTCCCTGACTCTTGCCATGTGATGCCCTGCACCACAATGGAATTCTGCCAGCAAGGA-AGTTGTCACCAGACACAGCCCCTCAACTTGGGAGCTCCAGAACTGTAagtcaaa

a score=7012
s chr3           95352802 135 + 160039680 AGAATCCATATCCCTATAT---AGGAAATATAACAGTCGGGACAGTATATGCACATGAACTATACCAAATGACATCGTCAAAGTTGGCCTAACAAATTATGCTATAGCCTGTTGTACTGGCCTGCTGCTTGCCAGCAG
s HiC_scaffold_1 99927595 136 + 233722169 AGATTGCTTATGCCCGTATTGAAGGGGATATGATAGTCTGTGCAGCATATgcacatgaacta--ccaaagtatGGTGTGAAAGTTGGCCTAACAAATTATGCTGCAGCATACTGTACTGGCCTGCTGCTGGCCCGCAG

a score=9005
s chr3           95352938 168 + 160039680 CTTCTCAGTAGGTTTGGCATGAAAAAGATCTATGGAGGCTAG--------------AGATGAA---------------------AGTCAGCCTGGTGACATCCCTTGCTATCTGGATGTAGGACATACCCAATCTACAATTGGCAATAAAGTTCTTAGAGCCCAGAAGGGAGCTGTGGATGGAGGCTTGACAATTCCTCACAG
s HiC_scaffold_1 99929194 203 + 233722169 CTTCTCAATAGGTTTGGCATGGATAAGATCTATGAAGGCCAGGTGGAGGTGACTGGAGATGAATACAATGTGGAAAGCATTGATGGTAAACCTGGTGCCTTCACCTGCTATTTGGATGCAGGCCTTGCCAGAACTACAACTGGCAATAAAGTTTTTGGAGCTCTCAAGGGTGCTGTGGATGGAGGTTTGTCTATCCCTCACAG

a score=55071
s chr3           95410280 951 + 160039680 tcttttttttttttttttttttcAGCAGACTTAATTC-TTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCA----GGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTGCCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGG-CCCCTGGGTCCTCCGGGCACCTTCCACTGCACCAGCGTCATCCGCCATTTGGTGTTTTCCCGAAGAAGAAGA
s HiC_scaffold_1 23605973 931 + 233722169 tctacgttttttttttttttttcag---atttcattcattttatttttcttgtgtaaaAACCCTTATGTTGTACCTACCGCTGGAGCTTGAGTCCTTTGATCAGAGACT--AGTGTGGGTTTTCACAAGACAGTCAGTGAATTCCTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCTAGAGGTCAGGAGTCATGTAGGTAACTGTAGGTCTTAGAGATGGCATCAAAGGTG-CCTTAGCAAAATTGCCCAAAGTAGCAGTACAGTCCCAGGCAAAGGTGTAGCAGTCATCAATACCAGCTATGAGCAGCATCACTTTGGGCATAAGGCCTGAGACAACCCCAGTGCCTTTGGGTTCGGGGATCAGACACACCA-CACAGAGTCACAGCGGCCTGGCAGCTGGCAAGGGACTGTGTGGGGCTTGTCAATCTTGTTTCCCCAGTGGCCTCTCCTCTCAGGAGCAATGGAGAGTTTGTCCAGGATGATGGCCCCCCGAATGGCAGTGGCTACCTCCTTAGAACACTTTAAATCCAGAGCCACGTGACTTTTGTATTCCCCAGGGACGACAAATGCCTTGAGTCTGGTCCCCTGGCCAGCACGAGTTTGGTTCTGCACAGGCATGATCTTCAGGACTTCATCTTTGAGGGATGCACCCAGGAAAACGTCAATAGTGTCAGACTCCTTGATGAGTAGGGAGAAGAGAAAACTTTCCTCCAGGGACTTGATCTTCATGTCCTTGACCAGTCAGTGCAGCTTGATGACAGAAATCCACTCCTTGTCCTCGGCCTTACCACCACAAGCTCCACGGCCTCG------------------AAGGCCACTTCAGAAGCCTCCACAGAAGCCACTGCGGCCTCCCATGCATGGGCCCCCTGGAACCTCCCGGT-CCTACTGCTGCAATGGCGTCATCCTCCATCTGGTGTTTCCTCAAGGAAGAaga

a score=52862
s chr3           95410288 943 + 160039680 ttttttttttttttcAGCAGACTTAATTC--TTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCCCCGTGGCCTCGACAACGG-----------CCACGACCCCTAAGACCGCT----GCCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGGCCCCTGGGTCCTCCGGGCACCTTCCACTGCACCAGCG---TCATCCGCCATTTGGTGTTTTCCCGAAGAAGAAGA
s HiC_scaffold_1  1549976 914 + 233722169 ttttattttattttcga---atttcattcatttttattttccttgtgtaAAAACCCTTATGTTGTAGCTACTGTTGGAGCTTGAATCCTTTGGATGGAGACTCTAGTGTGAGTTTTTTCAAGATGGTGGGTGAATTCTTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTCAGGTAGCTGTAGGTCTTGGAGATGGCGTCAAAGGTGGCCTTAGCAAAGTTGCCCAGAGTAGCAGTACAGCCTCTGGCC-AGGTGTAGCAGTCATCAGTACCAGCCATCAGCAGCAGCTTCTT-GGCACAGG-GCTGAGACAATGCCAGTGCCTCCCGGGGCAGGGATCAGACGCA---------------------CTGTCACCTTGCAAGGGACTATGTGGGGTTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCGCACAGGAGCAATGGAAACCTTGGCCAGGATGATGGCCCCGCGAATGGCAGTGGC------------------TACACCCAGACCAATGTGACCGTTGTGGTCCCCAGTGGCGACAAATGCCTTGCACCTGGCCCACTGACCAGCACGAGTTTGCTTATGTACAGGCATGATCTTTAAGACTTCATCCTTTAGGGATGCGCCCAGGAA-AAGTCAATAATCTCAGACTCTTTGATGGCTAAGGAGTCCC--TGGATGGCTTCCAGGGACTTGATCTTCATGCCCTTGACTAGCCAGCTCAGCTTGGTGACAGGAATCTACTCCGTGTCCTTGGCCTTACCGCCACGAGCTCCGTGGCCTCAGCCCCTGGCCCTGCCACCTCACGGCCTCGAAGGCTACTTCCGTCCGAAACCTCCTCGGAAGCTGCAGCGGTTTCCCATGCCTGGGTCCCCAGGGTCT-CGGAGGCCTTCCGCTGCACCAGCAGCCTCATCTGCCATTTGGAGTTTCCCCGAGGAAAAGGA

a score=41167
s chr3            95410290 942 + 160039680 ttttttttttttcAGCAGACTTAATTCTTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGA-GCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCTC-AGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCC----CAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTGCCGAATTCTCCGCGGAAGCCGC-----CTCGGCCTCCTAATCCTGGGCCCCTGGGTCCTCCGGGCACCTTCCACTGCACCAGCGTCATCCGCCATTTGGTGTTTTCCCGAAGAAGAAGAA
s HiC_scaffold_1 178178358 867 + 233722169 tttttttttttttaacagatttcGTTCACTT---TTTCTTGTGTAAAAACCCT-ATGTTGGAGATACTGTTggagcttgtttttt-----------------------tttttacaagatgGTCAGTGAATTCCTGGTAAGGAGACTTGGTGAACATAGTCTCTTTCCAGAGGTCAGGGATCAGGTAACTGTAGGTCTTGGAGATGGCACCCAAGGTGGCCTTGGTGAAGTTGCCCAAAGTGGCAGTGCAGCCcctg----------------------------ccagcagcagcagcttcctGGGCACAGGGCACAAGCACAATGCCTGTGCTCCTGGGGGCAGG-ATCAGCCACATCAACACTGAGCCACAGCAGCCTGTCACCTTGCAAGGGACAATGTGGGCTTTG----TCTTGTTCCCACATTAGCCTTTCTTCACAGGAACAACTGAGAGCTTGGCCAGGATGATGACCCCTCAGGTGATAGTGGCTATCTCCTAGGAGCACTTTTCAACCAGATAAACTTGACCATTGTAGTTCCCAATAGTGACAAATGCCTTGAACCTCATCTGTAGGTCAGCACCAGTTTGCTTCTGCAAGGGCATGATTTTTAGAACTTCA-CTGTTAGAAACGTACCCAGGAAAAAGTCAGTCATCTCAAGACCCCCTGATGGATAGGGAGAAGACAGAAATTTCCTCCAGAGAGGTGA---TCATGTCCTTGGCCAGCCAGCCAGCTCAGCTCAGGAACAGGGATTCACTCCTTGTCCTCACCCCTAGC--------CATCATGCCCCTGA----------AGTCTCCAAGAGAACTGTCTGACTCTCCATTTTGGCCCCTCATGCCTGGACTCTCTATTCTCAACGCCAGG--CCCCCAAGC-CCTCCTGCTGTACCAGCATCATCCGCCATTTGgcgtatt-ttgaagaaaaagga

a score=17959
s chr3            95410307 834 + 160039680 GACTTAATTCTTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCT----TTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGT---------CATCTATACTGGCCATCATCA------GGAGCTTCTTGGGCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATG--GCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCC------CCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTG--CCGAATTCTCCGCGGAAGCCGCCT
s HiC_scaffold_1 119310773 788 + 233722169 gatttaatt------tttttcttgtacaaaAACACT-ACACGGACGC-ACA-TTAGAGCCTGAGTCCTCTGTGTGGAAACTCTAGT-TGGGTGTGCAGGCCCTGGTCAGTGAATTCCCAAT------------TCCAAACACTGTCTGTTCTTCCAGAGGTCAGAAATGAGACAGCTGCATGTCT-AGCAACAGAATCAA-TGCAGCCTTGGTGAAACTGC--AGGGCAGCA---------CTAGTGCAGGTGTAACAGTGGTGGACAGCAGCACCAGTGGACACCAGCACTGGCGGCAGCTTCTGGGGCCCAGGGACCCAGACTATGCTAGTGCCTCTGGGAGCAGGGAGGAGGC-CACCAACACAGAGCTGCAGCAGCCAGTCACCCTACAT--CACACTGGGAGGCCTGCCCAGCTGCTTCCTGCAGCACTCTC-CTGCATGGAGATGGTGGCAAA-GTAACCACCTTAATGGACCCTAGCATGCAGCAAGGGTA--CTCCAAGAA----TGAACATCCTGACCCACACAACCAGCATTGTCCC------TGATGGTAGC---ACACCTGCTCTATGGACCAGAATGTGTCTGCATTTATGCAGGCAAAACGT-------------CTTGACAAATGGCCCCATGAAAAAGCCAATG----CTGACTCCTTCATGGGCAGGGGGAA-AGGCAGCTCTCCTCCAGGGACTTGCTCTTCCTATGTTCAACCCAGCAGCCTGACGCAGAGATGCACAGCCACCAAT--GCCTCAGCCTGGTCCCAGGGAGCTGGGCAACCTTGGCTCTGACCATAGCCTTGACCCTGAAGGCCTCAGCTCTGGAGTCTCCAACAGGGCCTCCT

a score=21617
s chr3           95428385 573 + 160039680 TTACCCAGAGCT-TGGGTCTGTGTGAGAAGATGAGGATCCCCGGGAAATCTCCAGATCGCCTTGTGGAGGAGGAGGGGAGAGAACAGAGTTTGCA---------------GGCTTTTGATTATGAGACAGAAATG--GTGTGAGCCTCGGTTA---------GAGTTGTTTTCGCTTCTTGTTCATCCTGCACAGGGCCAAAGCATGTCCTCCCTCCCTGGGTGCATGAGTTTGGCTGCAGCGCCAGCTGCAGCTGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCGGTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTACATTGATGAGGAACTGGAAAAGATGGACTGTATACAGCAGCGCAAGAAGCAGCTCGCAGAGCTGGAGACGTGGGTACTACAGAAAGAGTCTGAAGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCCAGGTAGGGATTC--CAGGAAGCAGAAGTAAA--TGTCCATCTGTGTCCTCCTTGGAG--TGACTGTTGTTGTCATTGTCCTAAGCACTTTATACTTTGGCGACTTCAGTCAGGTGGGGCCTTACTCTTCCTCTGAGTTTGTAAT
s HiC_scaffold_1 93248665 593 + 233722169 TTATTCAGGCCTGTTGGCCTATAGGAAACACTGAAAATACC-ACAAAATTGCAGCATTAAGTTTtggagaaaggggagaaaaaactAATTGAGTAACAGCAGTGAAGCATGAATTTT--TTAGAAGACTGAAATTCTTTGTTGGTTGTGGTTAACGACTTCAgagtaattttaatttcttcttgg--ataTAAAGGACAAAACCATGTCTTCCCTCCCCGGGTGCATTGGTTTGAATGCAGCAACAGCTACAGGGGAATCTGAAGAGATTGCAGAGCTGCAACAGGCAGTGGTTGAAGAGCTAGGTATTTCTATGGAGGAACTTCGACAGTTCATTGATGAAGAGCTGGAAAAGATGGATTGCGTAAAACAACGCAAGAAGCAATTAGCAGAGTTGGAGACATGGGTGATACAGAAAGAATCTGAAGTGGCTCATGTTGACCAGCTCTTTGATGATGCATCCAGGTGAGGACTAAGTAGAAAATAGACAGAAATCTGTCCA-CTGCAGACATTTTTGAGTATAGTTAATGGTGGCATTATACTAAGAAGTTTCTACT-----AAGTACAGTTGTGTGGAACTTTA--CTTCTTCAAAGTTTATGAT

a score=19338
s chr3           95429917 796 + 160039680 GTTTCTGTTTTTGttttgttt-tatttttgagaccgttt--ctttctaactctggctgtcctggaactacctctgtataccaaattggcctggaactcaga--gatctgcttgcctctgcctcctgagtgctgggTTCTGTttttgttctgtctaaaggtttcttactctgtaggccatgctggccatgaaccactcactgtattgaccaaagtgacctcaaacctagctagccttggttcctcaggctaagg-actaggattacatgtgtgagcTCAGAGGCTAGGTAT----TGTA--TAAATG--TATATACATTGTAATG-CTCTTGTACCGCACTGTCTCCACTGGCTTTGATCTTTTCTGCATGTGTTCCAATATCAGGGAAGTGACTAACTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGACTACAGTATCATGACAGTAGCTCTGAGGATGAAGCTTCCCGGCCCACAGAGATCATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAGGTAAATGATGAAGCTTTGGTCAGAAAAGTCTTAGAATGGAAGCTGAAATACTGGAAGACAAGTATGTTGCACGTAAAGAATCACATTGTCATTACTTACTATGCCAAATACCTGACTGACTTATTATGACAACAAGTAAGTATTC---TTAGCATCGTAAGTGTTTT-------CTGTATTCTGATTGCTT-----CCTTTCCCCATTTCAGATAAGGTATACTT----ATTTTCTGTCTTTTCCCCCATGTG---------TTTGTGTGTA-------------GTTTGCCTAtgtctgagtttctttttcagtt
s HiC_scaffold_1 93249729 739 + 233722169 gtttttgtttttgttttttttgtctttttgagactgtatgattatatagttcaagctgaccttgagct--cactgtagcccaggctggtctcaaactcacaatgatcctcctacctcagc--------------------------------------------tagtaaatggg--attacagccatg---------------------------catcATGCCTGGCTGGGAAATGTATTCTAGATTGAGACACTATGG---AATATGTAGGGCCCAATATTAAGAATAATGTGTacttaaatacatatataaattgtAATGGCTC--------------CTCTGCTGGCTTTGACCTTTTCTACCTGTGTTCTGATATTAGGGCAGTGACTAATTGTGAATCTTTGGTGAAGGACTTCTATTCCAACCTGGGATTACAGTACCGGGACAGTAGCTCTGAGGATGAAGCATCTCAGCCTACAGAAATAATTGAGATTcctgatgaagatgatgatgtgCTCAGTATTGATTCAGGTAAGAGATGAGGATTTAGGTAGAAAAGTCTCAAGATTGAAGTAAAAATGCTAGAAGATAGagagataagagaaaaaaaa----attgtcatta------aCTCCATATTCC-----AACCtgctcagaaaaaaat---gtatccaTGTTAATACCATAGATGTCCTCAATGTGCTGTACTCTGATACTTTACCCATCTGTCCCCAGTTAGTGTAAcctttattttaacttttcttgtctttctttatagGTGCCATCACGTTATGTATGTATCTCCAAACAGATTTttccctatttt---gttttttttttagtt

a score=29881
s chr3            95530307 868 + 160039680 CAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGCGAGCCGGACGGGCACTGGGTGACTCTGTGCCTCGCGGAGGAAAATCAAGTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAAGCAAAATGTCCTCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAAAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGGAAATTTGAAGACATGGCAAAGGCTGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTACATCCCCCCAAAGGGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCAGCCTTCTTCTTGTTCTGTTCTGAGTACCACCCCAAAATCAAAGGCGAGCATCCTGGCTTATCCATTGGTGATGTT---GCAAAGAAACTAGGAGA--GATGTGGAACAACACTGCAGCAGATGACAAGCAGCCCTATGAGAAGAAAGCTGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTGCCTACAGAGCTAAAGGAAAACCTGATGCATCGAAAAAGGGGGTGGTCAAGGCTGAGAGAGCaagaaaaagaaggaagaggaagatgaggaggaggaggaagaggaggaagaaga----------------------ggaggaagatgaagaagaag---------------------------------------------------------aagaagaTGATGATGAATAAGTTGGTTCTAGGGCAGTTTTTTTTTTCTTGTCTATAAAGCATTTAACC---CCCCTGTACACAACTCACTCCTTTTAAAGAAAAAA--TTTGAAAAAAAAAatgt--------------tatgtggatgagtgttttaccttcatgtat
s HiC_scaffold_1 115382722 920 + 233722169 CAGCCCTTGCAACACCTCGAGTTCTGTAGGGACAGTTCCAGGGCAAGCAAGGGCTGAATGGGCA-------GCTCTGTGCctcacaaaggaaaaacaacGAAACATGGGCAGAGGACAGCCTACAAAGCTGAGGAG-AAAGTGTCATTGTGTATATTCTTTCTACAAACTTGCCATGAGGAGCACAAGAAGAAAGAGTC-AATGC----ATCAACTTTCCAAAGTTTTCTAAGAAGTTCTCAGTAAGGTGTCATGCCAGgactgcaaaagagaaaagaaaacctgaagacatagcaaaggcccatgag---------gaaagaaaaacaaaagcttaaaCTCCCtca---gagaaagcaaaaagaagttCAAGGAACTTAAGGTATGCAAGAGGCCTCTGTCACC---CTTCTTGTCCTGTCCTCAGT-TCACCCC-TAATCAAAGGAGAGCATTCCTGCCTATCCGTTGGTGGTGTTCTCACAAACAAAATTGTAAAACGTGGTGGAATAATACTGCTGCAGGTGACAGGCTGCCTT-----CAGAAGGCTGCTCAGCTGAtggaaaaatgcagaaaagataTTGCCGTATGCTGAGCTAATGGAAAGCCTGATACAGGCAAACAAAGG------------AAGAGagctgcaaaaagcaagaagAGGAGAcggaggaagaaaaagacaagaaagaagatgATTCCACTGGTCACACTGGCCACTGGGGAGACTAAAGTAGAAGGAACACTTTAGCCCAAGAATTCAAGGCCCCTGGAcaacatagcaggaccctgtctcaagaaaaaatataatatttaagtgGGTTCTAGCACAa----ttttttctcatctataaagcaTGTAAACTATTCCCCACACTcaagtttctctttttaaagaaaaaaagattaaatgtaaGGCTGTGTAAGATTTGtttctcagtggtagagtgttctCTTTTTGTGTAT

a score=19139
s chr3            95916750 820 + 160039680 AAAACCCTAAGCTACAAATAAAGGCCGGTCCTGTGGAGAATAAACAGGACACACTCCGGGTTTTCTTTTGGGGGGG--GACTGTCC------------TTTACAATTTTATTAGAGTATTGCTGGGGAGCAAAGAAAAAGACAGG-GTGAAAAAAATTTCTGAGCAGTTGTGATGGTGAAATGTCCCTAGGGAGCCCATCAGGATGGTCACTGTGACCATGGGGAGGAAGTCACCGTC------------GCAGTTGCTTTCTTCATATCTGTCTCC----------------------------------------ATTCGACTTCTGCAACCCTCAAGAGCTCATTGACAA-AGGGATTTTAACCATGTTAAATAAACGCAGCTCT-------------AAAGAGCATGGAAGCCAACCAGACACCCCATGTGCAGAGGGAGCGATGAG---AGTGGAGGGTGGTGAAG-------ACCTACACCTTTTCCTCTCCTGGCCACACTC-ACCAAGGGAAGA----ACGAGGCAAGCAAGTGCTCAGAACGCCAGGAAGATGT-GGCCCCATCAGGGGGTGTATAACCCGGACCTTG--TAATGTAAGCTATTTTTGAAATCAAGATCCCTTTAGCTGCTAAGACAAAGTGAAGCTATGCTTGTCATGCCCCTCCTCCTAGTTTCAAAG----CGTGTGAATCATAACTGGGATGCAATTATGATGCCAGATAAAGAAAGGTTGGTTATATGCAGTGGCTAACATACAAATGACCTTTTGGGCAAACAGGAATCACGACACTAGAAAGCAGGTA-AGAATGCTAGCTTCTATCTGCATAGTCTGCTGG-CATCTGATCATAATTGGAGTGGTGATGAAGACATTTGCTCAGCTGATAGGGAAAGACTGCTTACACATCAGACACC
s HiC_scaffold_1 231147199 895 + 233722169 AAAAACTCAAGCTGCAAATCAAAATTGGTCCAATGAAGAACAAACTGGTCACGCTCCTGATGGTTATGTCAGGATACCTAGTGTCCAAAGTGGCAGCTTTTATAATTTTGCCAAAGA---GCTGGTGTGCCAGAAAAAAGACAGGAGCGGAA------TCTGGGCTGTTGCCGTGATGGGCCGGCCCTGGGG-TCCAGTCGGTGTGGTTGCCGTAAGGTCACGGCAGGAAGCGCCTTCTGCTCCGGTCTTGCAGGTGCGCTCTC---ATGTGTCCCGTGGACGCTATGAAGGAAGGTTAAGTGCAAACAATGCTAAGAGCGAACTGCTGCCGCTCTCG-GTGCTCATTCACGAGAGGGGTGTTCATTG-GCTAAACAAGCCACGCACTGCATTCAAAAGGGAGAGCGGGTGGAAGCAAACCAGA-ACCTTCTGTGCAAAGGAAAGGttgaggaaaggggaggggagtgaAGGACAGATACGTGCACTCTTCC---TCCCAGCTGTGCTCCGCAAAAGGAAGACTGCATGAGCCAAGCAGATGCTCAAAGTGCTAAAAAGACATTGATCACATTAGTGTCTGTACAACCAGCACCTTGCTTAATATTAACTTATTTAGTGATCAGTATCCCATTAATTGCTAAGACAGAGCGATGCCCAGCTTGGCATGCTGCCTCCCCAAGATTTGAAGGTATTCTGCACGTCATTATTGGGTTGCAATTATGCTGC-----AGACAAAGGTTGGTTACACACAGTGGTTAACACACAGAGGACTCACGGGGCAAACAGGAAGCACCAGGTTAGAAAACAGGTACCGACAGCTGGCTGTCGTGTG--TGGTCTGGTAGCCCTGTGGCCACAGTCG----TGTGATGAAGACAGTTGTTAGGTAGATGCGGGGAGGCTGCTCACACATCAGACCCC

a score=3995
s chr3            95960616 230 + 160039680 AGGGTGAGTGGAGGCATTGCCCACCCCCCACAAAAGGGCTCAGACAGTCTCTGACCTCCCCGTCTGAGAGATCATCTCTCCATTTGGAATCCCAATCTCCCTCCAGTCCGACAATGGTCTTGAATTCACCTGCACATCTAAACCCTATCTAAAGTCCTCAACTTCCCTTGTTATTTTCATGTCCCATACGAA---CAGTCCTCGGGAAAGATAGAACAAGCTAATCGCTCTTT
s HiC_scaffold_1 177011157 217 + 233722169 AGGATGAATACAGGCCTTTCCTATATCAAACGAAAGGTCCTCCACAATGCTGCATGTCCTGCTTAAAGGAATCATCACCCACTTTGGACTCCCAACCTCCATCGAAACCAATAATGCACCTGGATTTACCT-----TACAGATCATACAACAggt----aa-----cctggaaattccacat-CCATATCAACCTCAATCCTCAGGTGAGATCGAA-AGGCTAATCTCCTTCT

a score=7022
s chr3           95964170 257 + 160039680 TGATGCCACCGCACAGGCGCAGCATCAGGTGCAAGGT-----TCTGGAAGGTTTCTGGAAGTTGGACAGGGTGCGACCATCCTCTAGCTGTT-----------ATCAGCCCCTGCAGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGGTGGCGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGGCCGTCGGGGTCTTCATGAAGATCTGCACGTTGGCGTCTGCTGCTCAGCCACCTCAT-TGAAGACAGAG
s HiC_scaffold_1 86946152 262 + 233722169 tggtCCCACCGCAGAATCTCAGCACAAGATGAAGAGTAGACTCCTTTTGAGTTTT-----GTTGTGATCAATTTGTCCATCTTTCAGTTGTTTACCACCAAAGATCAGCCTTTGCTGATCAGCAAGAATTCCTTTGTTATCCTGGCTCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGTTCAGTCTCAAGTGTGATGGTCTTCCCCAT-AGGGTTTTTATGAAAATCTGTATCTTGGAGACAGTT------CCATCTTAGATGAAGAGAAAG

a score=9121
s chr3            95964174 220 + 160039680 GCCACCGCACAGGCGCAGCATCAGGTGCAAGGT----TCTGGAAGGTTTCTGGAAGTTGGACAGGGTGCGACCATCCTCTAGCTGTT-----------ATCAGCCCCTGCAGGTCAGGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGGTGGCGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGGCCGTCGGGGTCTTCATGAAGATCTGCACGTTGGC
s HiC_scaffold_1 116022290 230 + 233722169 GCCACCCCTCAGATGGAGGACCAGGTACAGAATGAACTCTGGATGTT-----GCAGTTAGAAAGAGTGCCACAATCTTCCAGTTGCTTGCCAATGAAGATGAGCCTCTGCTACTCAGGGAGAATGACTTCTTTATCCTAGATCTTGGCCTTCATATTACCAGTGGTATCACTGGTCTCCACCTCCAGGGTGATGGTCTTGCCCATTAGAGTTTTTGCAAAGATATGCATTTTGAC

a score=27714
s chr3           96219910 398 + 160039680 CCGCCATGTCTGGCCGTGGCAAACAAGGAGGCAAGGCCCGCGCCAAGGCGAAGTCGCGGTCGTCCCGCGCCGGGCTGCAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGCGTGGGCGCCGGCGCGCCGGTGTACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCATCTGCAACTAGCTGTGAGGAACGATGAGGAGCTCAACAAGTTACTAGGGGGAGTCACCATCGCCCAGGGCGGGGTCCTCCCCAATATTCAGGCTGTCTTACTTCCGAAGAAAACGGAAAGTCATAAGCCTGGAAAGAACAAATAA
s HiC_scaffold_1 92227973 398 + 233722169 CTGTGATGTCTGGCCGAGGCAAGCAAGGAGGCAAGGCCCGCGCTAAGGCCAAGTCGCGCTCCTCCCGCGCCGGGCTGCAGTTCCCGGTGGGTCGGGTGCACCGCCTACTGCGCAAGGGCAACTACGCCGAGCGGGTGGGTGCCGGCGCACCCGTCTACATGGCGGCTGTGCTCGAGTACCTGACGGCCGAGATCCTGGAGCTGGCTGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCTCGCCACCTGCAGCTGGCTATTCGCAACGACGAGGAGCTGAACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGTTCTGCCCAACATCCAGGCGGTGCTGCTCCCGAAGAAGACGGAGAGTCACCACAAGGCGAAGGGCAAGTGA

a score=46860
s chr3           96219913 934 + 160039680 CCATGTCTGGCCGTGGCAAACAAGGAGGCAAGGCCCGCGCCAAGGCGAAGTCGCGGTCGTCCCGCGCCGGGCTGCAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGCGTGGGCGCCGGCGCGCCGGTGTACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCATCTGCAACTAGCTGTGAGGAACGATGAGGAGCTCAACAAGTTACTAGGGGGAGTCACCATCGCCCAGGGCGGGGTCCTCCCCAATATTCAGGCTGTCTTACTTCCGAAGAAAACGGAAAGTCATAAGCCTGGAAAGAACAAATAACTATTATCCCTTTCCACA---CAAAAAGGCTCTTTTAAGAGCCACCAAAGTGTCATCCAAAGGGCTGGTCACAAACTGGCGCGTTAGCTAGCTCCTTTGTAAAAGATTTGGTGGCTCTAAAAAGAGCCTTTT--TGGATTCGTGTTGAGTT--TCACTTGCTCTT---AGCCTTGTGGCTCTCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGTGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGATGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCGCCCACGCGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCCTGTTTGCCACGGCCAGACATAAC
s HiC_scaffold_1 92248566 912 + 233722169 ctgtCTCTGGCCGTGGTAAGCAAGGAGGCAAGGCCCGCGCCAAGGCCAAGTCGTGCTCCTCGCGCGCCGGGCTGCAGTTCCCGGTGGGTCGGGTGCGCTGCCCGCTGCGCAGGGGTAACTACGCCAGGCAGGTGGGGGCCGGCGCGCCAGTCTACGTGGCTGCGGTGCTCTATTACCTGACGGCTGAGATCTTGGAGATGGCGGGCAATGCGGGCCGCAACAAGAAAA-------CATCATCTCTCGCCACTTGCAGCTGACTATCCG---CAATAATGAGCTGAATGAGCTTTTGGGCAAAGTCACCATCGCCCAGGGCGGCGTTCTGCCCAACATCCAGGCTGTTCTGttaccaaagaaaac--aaagttgcaaagccaaaagcaaataaaacctgACAAACCAAGCAACAAGACCGAAAGActccttt---------caaaaaataaacctaATG------CGCTATTTTGTG-----ATCAGCCCTTCCTTTGACACTGTAGTGGCTCTTAAAAGAGCCTTTGGGTGAAGGGGGGCAGATTTAATTATTTGTTCTTGCCAGGCTTGTGACTCTCCGTTTTCTTGGGCAACAAGACAGCCTGGATATTGGGCAAGACGCCGCCCTGGGCAATGGTGACACCTCCGAGTAACTTGTTCAGTTCTTCGTCGTTTCTCACCGCTAACTGCAGGTGGCGAGGGATGATGCGCGTCTTCTTATTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATTTCGGCCGTCAAGTACTCGAGCACCGCGGCCAGGTAGACTGGGGCGCCGGCCCCCACCCGCTCGGCGTAGTTGCCCTTGCGCAGCAGGCGGTGCACTCGGCCCACCGGGAACTGCAGCCCGGCGCGAGAGGAGCGCGACTTGGCCTTAGCCCGAGCCTTGCCTCCTTGCTTTCCGCGTCCCGACATTAC

a score=59806
s chr3           96220363 1268 + 160039680 AAAGGGCTGGTCACAAACTGGCGCGTTAGCTAGCTCCTTTGTA----AAAGATTTGGTGGCTCTAAAAAGAGCCTTT---TT----------------GGATTCGTGTTG---------------------AGTTTCACTTGCTCTTAGCCTTGTGG---CTCTCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGTGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGATGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCGCCCACGCGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCCTGTTTGCCACGGCCAGACATAACTTAGAGTATAATGTAGGACACACCG-AGGTGACAACTTCTGTAAAGCTAGGTTGATTCGTCTCTAAGG-------------CCTTTATAGGCGCTCCTAGGGGTGGGGTGAGGAGGGAGC-TTTTCATTGGTGGTTATTTGGCC----CCTGAGAAGTCCAAT--GAAATCTG----AAATTTTAGGCTTGTAC-TGAAAACGCAAGTTTCGCGTATGGGCCAATGGAAATT---AAA----AGTACTTTG-------AGACCTAATTTGCATAAGGCGTTCATAAAGGGCTCAAGTCCTCCGGGTCCCTGGTTGA-------------TTTTCTACTTACTAGACTGTTTTCCACTGTTTGCTTTTAAT--CATGCCTGAACTGGCCAAATCTGCCCCGGCTCCCAAGAAGGGTTCCAAGAAGGCTGTCACCAAGGCGCAAAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAAGTGCTGAAGCAGGTGCACCCGGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGCATAGCAAACGAGGCTTCTCGCCTGGCGCATTACAACAAGCGGTCTACAATCACATCGCGGGAGATCCAGACGTCGGTGCGCCTTCTACTGCCCGGAGAACTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACACCAGCGCCAAGTAGAGGCCTCCCTGGATGAGGCGCTCGCTGGCCCCTTTGATCTTTTAAAGTCTCTTTTAGTGAGTCACCCGCTCAAATCAGAAGAGAG
s HiC_scaffold_1 92214836 1342 + 233722169 AAAAGGTCGGGAGGAACCTGGATCTGTTGACAACTCCTTTTTACTTGAAAGAGTGGGTGGCTCTGAAAAGAGCCTTTGATTTCACAAGCGCCCCTCAGGGGCGCGCGTTGCGCGGGGGGCCTCCGCCCGGAGGCCTCACTTGCCCTTCGCCTTGTGGTGACTCTCCGTCTTCTTCGGGAGCAGCACCGCCTGGATGTTGGGCAGAACGCCGCCCTGGGCGATGGTGACTTTGCCCAGCAGCTTGTTCAGCTCCTCGTCGTTGCGAATAGCCAGCTGCAGGTGGCGAGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCAGCCAGCTCCAGGATCTCGGCCGTCAGGTACTCGAGCACAGCCGCCATGTAGACGGGTGCGCCGGCACCCACCCGCTCGGCGTAGTTGCCCTTGCGCAGTAGGCGGTGCACCCGACCCACCGGGAACTGCAGCCCGGCGCGGGAGGAGCGCGACTTGGCCTTAGCGCGGGCCTTGCCTCCTTGCTTGCCTCGGCCAGACATCACAGCGACC-----------CGCACCACAAGCAGCTACCACTCAAACACCGGGAAAAC-CGTCGCGAACGGTGACGCTTCACCCTTTTATAG-----CCAGAGCGCGGATTGTCCGCGAAGCACGCTCATTGGTTAAAACCTGGCTTTGGCCTGAG--GGCCAATAGGAGAGCTTGGCCAGATTCTACTCATTTACATAATCTCGTCCCCCACGCCTCCGCTCCGCTGAGAACTCGCGAATCGCAGCGCTGCGCGTCCGAAACCCTCATTTGCATGCGGCCTCTATAAATATCCTGGCGTCGCGGAGTGCCCCGCCGGGCTGGCGCGGCGCTTGTCTACTTGTTAGG--GGTTATCCCTGGTGGCTCTTGGCGCCATGCCGGAGCCGGCCAAGTCCGCTCCGGCTCCCAAGAAGGGCTCCAAAAAGGCTGTCACCAAAGCCCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACGGGCATCTCGTCCAAGGCCATGGGCATCACGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGCGAGGCGTCTCGCCTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAAGTGAGTGCCGTTC-GTACTTGGCGCTCCCCGGCCACGCT----TTGCAAAGGCTCTTTTCA-GAGCCACCCAC-CTCGTCAAGAGAAAG

a score=6756
s chr3           96228301 419 + 160039680 aggtgtggtgggacatacctgtaa-ctgaatcccgtggaagctggggtaggaggattt---ggagtttgatgtcatcctgggctacaaagtgatgtcctgtcttaaaagaccaCCCCCACCAaaaacaaaacaaaacaaacaacaaaaaccaaacaaacaaaactatcaaataaaacaaaacCAGTAAACCCAACCCTAAACCAACAATGTATTTCACAATACCTTAGAACCTACTAGACTCTCAATGCATTGCAGCTAATTCTGAGAGGAGATAGTTTAGGAAAAATATCTCAATAATGCAAACAGCAACCAATTTAAATTAAAGGCAACAAGAAC-------------AACAAAAAGTCTGAAAGTCCCTGGGGTTAGAGGGCTAACCTACAGATCTGGGATTGGGACTCCACTATCCCCAGTCTCATTAAAAA
s HiC_scaffold_1 92241558 343 + 233722169 AAGTgcggtggtacatacctgtaatcctagcacttcagAAACTGAGACAAGAGTATTGTGgagagtttgaggttagcctgggctacataatgag--------ttaaaGGCCTGTCT-------ggacatagcaaaagaaaaaaaaaaaa--aaaaaaacaaagacat-------aacTTTGCCAG--------------GAtcaatggcacatgcc-------------------tataatccccatTTAA-------AACTCTAAGAT-----------------------------TGCAAAGAGCAATCAATTTTTAGTAATAGCAACAATGACGTTAAGTAATAGCAACAAAAACTCTAAAAGTCCCTGGGCATTGTGGGTTAATTTATAGGTTTGGGATTGGGACTACACAGCTCCAAGCCCTGTATAAAA

a score=37708
s chr3           96238459 486 + 160039680 ACAGCT-CTTTCCGGGAAGCTGTGGTGGCTCTGAAAAGAGCCTTTGTGGGGAAT-----GGATGGGAGACAGGGCGCTTAAGCGCGCTCCCCACGGATGCGGCGGGCCAACTGGATGTCCTTGGGCATGATGGTGACGCGTTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAGGTAGGCCTCGCTCGCCTCCTGCAGCGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGGCGCTGGAACGGCAGCTTGCGGATCAGCAGCTCGGTCGACTTCTGGTAGCGCCGGATCTCCCGCAGCGCCACGGTGCCGGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGGGCGCTCTTGCGGGCGGCCTTGGTGGCCAGCTGCTTGCGCGGGGCCTTGCCGCCGGTGGACTTGCGGGCAGTCTGCTTCGTACGGGCCATGGCG
s HiC_scaffold_1 92197364 481 + 233722169 ACAGCTGCTCTTTTGGAAACGTAGGTGGCTCTGAAAAGAGCCTTTAAGGTGAATTTAGTGTATGA-----------TTTAGGCCCGCTCCCCGCGGATGCGGCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAGCCCACCAGGTAGGCCTCGCTGGCCTCCTGCAGCGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGACGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTAGCGCCGGATCTCGCGCAGCGCCACGGTGCCCGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGCGCGCTTTTGCGGGCCGCCTTGGTGGCCAGCTGCTTCCGCGGGGCCTTGCCGCCGGTCGACTTGCGGGCGGTCTGCTTCGTTCGAGCCATAGCG

a score=80271
s chr3           96238459 2145 + 160039680 ACAGCTCTTTCCGGGAAGCTGTGGT-GGCTCTGAAAAGAGCCTTTGTGGGGAATGGATGGG---AGACAGGGCGC-----------TTAAGCGCGCTCCCCACGGATGCGGCGGGCCAACTGGATGTCCTTGGGCATGATGGTGACGCGTTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAGGTAGGCCTCGCTCGCCTCCTGCAGCGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGGCGCTGGAACGGCAGCTTGCGGATCAGCAGCTCGGTCGACTTCTGGTAGCGCCGGATCTCCCGCAGCGCCACGGTGCCGGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGGGCGCTCTTGCGGGCGGCCTTGGTGGCCAGCTGCTTGCGCGGGGCCTTGCCGCCGGTGGACTTGCGGGCAGTCTGCTTCGTACGGGCCATGGCGAAGACGGAAGACACCCAAACGAGG-AGCACTCGGGGACCTGATACCGGCCCGAGCCGGC------CGCCTTTATAGGCGCAGTCTTCCCCGCGGCGGGGCGGAGACAGCGACTTGAAACTCCCGCGCTGCCGCGCCATTGGCCGTGGCGTCACCGGCCCCGACCTCGCCCATTGGCTCGGGCC-CGCCACGCCACCTGACC-CGCCCCCACCCGCCCCCCACGTCCAGCCCCGCGCCCGGTCCACTTGCCAACGTTCTGCGAGGGTGG-----------------------AGCCACGTCTGGCAGCTGCCCGTAGAGGGCGGGTC--CCGGCTCTGC---------------------CCAAGAGGAGCTcgcgcgc----------ccccgcccgccgcccAAAGTCCCAGGGCAGAACTAA---TCTAGTGTTTGTGCAGCACCGcccagccacagccacagtcccagccccagtcccCCATGATCCCTAGAGCCGGCCGCGTCCAGTCCTCGCGGGACACCTCCTCCTCCTAGACATTCCCCAAGGACCGGACGAGAGCGCGGCTGACTGCGACTTATGTCTAGATTGGCCTAGACGTCCTAGTTGAGTCTTAGTCCTGGG-------------------AAGGGTCAGGCG---------------------------------------------------GGTGGACGCTGAGTGAGGGACAGTGTTGTG-----------------TAGGACA-------------AGGGTGTGGGCA------------------------------GATAGGG-----------------GCTAAATGCTTGGGACGGTCAG--------------CGAGAACCGCGTATCCGCTCCGCCGAGGCAGGGCATGAACCAAAGAGCGACAACAGACTAACTACCAGGGGGAACCACGGGCAGGATGGGCAAGGAAGCAGAGGACACGACACTCT------------------------TACTTTTGGGGCAGGGCCAGGAAAGGCCACCAAGACCGGCTACCGTGACACAACTC---TTTATCTGATTCAGTGGGTGGCTCTGAAAAGAGCCTTTTTAGGAGCTCGCGGGGGTTATATCACAGAGACGCGGGCCGACGCGAG-----------CAGTGGCCTCACTTGCCCTTCGCCTTATGGTGGCTCTCCGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGCGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCACCCACACGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCTTGCTTGCCACGACCGGACATCACGAAAGCGCAAACAGACGAACGGCCACAACCAGGAAAC--GGTACTCCGGCGC------CGACGCCTCACCCTTTTATAGACGCAGACCCGATTGTCCGCCCGACGCTCTCATTGGCTCACACGCGTC-CTGACGCCGTGGCCAATAGGAGCGCGCGGACAGAAGCCTCTCATTTACATAAGACCGGCTCCCTCGCCCCGGCGCCGCCCTGGAACGCGCGAATCACGACGC-GCGTGCTCGGTGGCTTCATTTGCGTGCGGCC---------GTCGTTGCGACACTCCGCGGGTCGCCGGGCG---GCTGGGCTTGCTCGCT--------GTTTCTCCT----GCTCTG-----------GAAGCTGGCAAAGTGTGC-CCTGCATCCAAGAGGGCCT
s HiC_scaffold_1 92213373 2389 + 233722169 ACAGCCCTTCAAGTGCCGCCGTGGTTGGCTCTGAAAAGAGCCTTTGTGTGCGATGGACCGGGCGAGGCGAGGCGCGCGCTTCCTGCTTAGGCGCGCTCCCCGCGGATGCGGCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAGCCCACCAGGTAGGCCTCGCTGGCCTCCTGCAGCGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGACGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTAGCGCCGGATCTCGCGCAGCGCCACGGTGCCCGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGCGCGCTCTTGCGGGCCGCCTTGGTGGCCAGCTGCTTCCGCGGGGCCTTGCCGCCGGTCGACTTGCGGGCGGTCTGCTTCGTTCGGGCCATAGCGTACAGGGACACGAAACTGACGGGGCAGCGGTTAGGACCTTAACGACGCGCAGGACTGGCGCAGCAGCCTTTTATAGGCACAGTCATTTCC-CGATTGGGCGGGAAAAAACAATTGAAAGGCCCGCGCTGGCGGGCCATTGGCTGTGACGCCACCCGCCCCCGAGCCGTTCATTGGCTCGGGCCGCGCC---CAGCCTGGCCGCGTCCCGCCCCGTCCC---CGCCTCGCTCTCCGCTTTCCCCCTCTGCCAGCAGTTTCCGGACCTGGTATGCAGTGGCTGTCTGAGTGCAAGTGGCCTCTGAGCGCTGCTGCTCAAGAGTCAGTCAGTCGGTCCCCCTTGGGACCCTCATCCTTTCTTTCAAAACGGACTGCCGCGAGAGCCCTTTGCCTCGTGCGCTGC----AGTGTGGGTCCGGAGTTGAGACTCAACTTTTCGTCCCCTTCCCCCCAGCCCCTTGCACCTTTCAGGGC-------------ACTCTGGCAGCCGGTCA--------CCTCTCGG----CCGCCTGTTCGTAGCCTTTC-----------GATGGGAGCGTGGTCTTGGGGAAGTCACGCTGCGA-AAGCCCAGAGGGGCGAGTC-AGTGTCCGCCACGGGGGCTACGTCAGGTGTGCAAGAGAGCCCGGCGAAGCTCAGACCGAGACCCTCCACGCTACCGAAACCTGCGCGTTCCACTCCCGTTAGGCGCGGCGGCGACAACAGCGCCCCGCCCGAACTGCACCTCGCTAGGGCAGCCAAGGCCCGCGGGGGCGGGGGCACTCGGCTCCGCCCCTGGCCTTAGCGTTCATCGCAGAGTGCTACGCGGCCCGCCCGCGAGATGTTTGCG-CGGCCTGAGGTGAGCAACTCCCAAGGTCCACGGCCCGACCCGGGCGAGGTAGGGAGTGAGCCCAAGA-------------AACCGGCAGGGGGACGCGGATGCAAGCGGAGTGCAGAAG--GCGCTCACTGCCCTCCCGTCCCATCCCTGGGCTCGGCGTGTACTGCTGGGAAAAAGGTCGGGAGGA--ACCTGGATCTGTTG-------ACAACTCCTTTTTACTTGAAAGAGTGGGTGGCTCTGAAAAGAGCCTTT----GATTTCACAAGCGCC---CCTCAGGGGCGCGCGTTG-CGCGGGGGGCCTCCGCCCGGAGGCCTCACTTGCCCTTCGCCTTGTGGTGACTCTCCGTCTTCTTCGGGAGCAGCACCGCCTGGATGTTGGGCAGAACGCCGCCCTGGGCGATGGTGACTTTGCCCAGCAGCTTGTTCAGCTCCTCGTCGTTGCGAATAGCCAGCTGCAGGTGGCGAGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCAGCCAGCTCCAGGATCTCGGCCGTCAGGTACTCGAGCACAGCCGCCATGTAGACGGGTGCGCCGGCACCCACCCGCTCGGCGTAGTTGCCCTTGCGCAGTAGGCGGTGCACCCGACCCACCGGGAACTGCAGCCCGGCGCGGGAGGAGCGCGACTTGGCCTTAGCGCGGGCCTTGCCTCCTTGCTTGCCTCGGCCAGACATCACAGCGACCCGCACC-ACAAGCAGCTACCACTCAAACACCGGGAAAACCGTCGCGAACGGTGACGCTTCACCCTTTTATAGCCAGAGCGCGGATTGTCCGCGAAGCACGCTCATTGGTTAAAACCTGGCTTTGGCCTGAGGGCCAATAGGAGAGCTTGGCCAGATTCTACTCATTTACATAATCTCGTCCCCCACGCCTCCGCTCCG-CTGAGAACTCGCGAATCGCAGCGCTGCGCGTCCGAAACCCTCATTTGCATGCGGCCTCTATAAATATCCTGGCGTCGCGGAGTGCCCCGCCGGGCTGGCGCGGCGCTTGTCTACTTGTTAGGGGTTATCCCTGGTGGCTCTTGGCGCCATGCCGGAGCCGGCCAAGTCCGCTCCGGCTCCCAAGAAGGGCT

a score=14089
s chr3           96238521 432 + 160039680 ACAGGGCGCTTAAGCGCGCTCCCCACGGATGCGGCGGGCCAACTGGATGTCCTTGGGCATGATGGTGACGCGTTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAGGTAGGCCTCGCTCGCCTCCTGCAGCGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGGCGCTGGAACGGCAGCTTGCGGATCAGCAGCTCGGTCGACTTCTGGTAGCGCCGGATCTCCCGCAGCGCCACGGTGCCGGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGGGCGCTCTTGCGGGCGGCCTTGGTGGCCAGCTGCTTGCGCGGGGCCTTGCCGCCGGTGGACTTGCGGGCAGTCTGCTTCGTACGGGCCATGGCGAAGACGGA
s HiC_scaffold_1 92682516 417 + 233722169 ACTGGATTCTTAAGCAGGTTCTCCACCTCTGCAGTGTTCTATCGGG---TAATTTGGCATCACTGTTACACATTTGGCATGGAGAGCACACAGGTTGGTATGTTCAACCAGGCTAATCAGAAAAGCCTTATTTGTCTCCTGCAAAGCACCAACAGCTGTGCTCTGGAAGCGCATATCTGT-TTGAAGTCCT----GATTTCTCCCACCAGATGCTGGAAAAGGAGTTTGAGAATCAGAAGTTCATTGAACTTTATTTA-------ATTTCACTGAGAGCCACAGTCTCAGGGTTGTGACAGTGATGTTTCTTCACCCCTCCAATAGAGGGTGTGCTCTTAAGAGCAGCTTTTGTAACTAGTTGTTTCCTGGGTGCTTTATCACTGGTGGATTGGAGTGCAGTTGGCTATGTAGGAGCCATGGTGGATAGGAA

a score=13960
s chr3            96238524 418 + 160039680 GGGCGCTTAAGCGCGCTCCCCACG---GATGCGGCGGGCCAACTGGATGTCCTTGGGCATGATGGTGACGCGTTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAGGTAGGCCTCG--CTCGCCTCCTGCAGCGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGGCGCTGGAACGGCAGCTTGCGGATCAGCAGCTCGGTCGACTTCTGGTAGCGCCGGATCTCCCGCAGCG--CCACGGTGCCGGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGGGCGCTCTTG-CGGGCGGCCTTGGTGGCCAGCTGCTTGCGCGGGGC-CTTGCCGCCGGTGGACTTGCGGGCAGTCTGCTTCGTACGGGCCATG
s HiC_scaffold_1 184815652 417 + 233722169 GGACTCCTAAGCATGTTCTCCATGTATGGTGTGGTGGG-----TGGATATCTTTTGGCATAGCAGTTCCACATTTGGCAGGGATAGCTCCCAGGTTGATACCTTC-AATGGTTCCACCAGATAGGCCTCAGACTTGCCTCCTGCAAAGCACTGATAGCTGCGCTCTGGCAGCACAGATCAGTTTTGAAGTGATGAGTAATTTCTTGCCCCAGAAGCAGGAATGGAGGTTTGTGAAT----AGTTCAATGGACTTGTGATAAAGTCTAATTTCTCTACGTGTACCAGCATCCCAGACTTGTAACAGTGAGGTTTCTTTATCCCTCCAGTAGAGGACACAATCTTTCCGAGTGGCTTTTGTAGCCAGTTGTTTCTTGGGTACTTTTACCTCTGGTGGCATTGTGGCCAGTCTGCTTTGTATGAGCCATG

a score=17159
s chr3            96238527 414 + 160039680 CGCTTAAGCGCGCTCCCCACGGATGCGGCGGGCCAACTGGATGTCCTTGGGCATGATGGTGACGCGTTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAGGTAGGCCTCGCTCGCCTCCTGCAGCGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGGCGCTGGAACGGCAGCTTGCGGATCAGCAGCTCGGTCGACTTCTGGTAGCGCCGGATCTCCCGCAGCGCCACGGTGCCGGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGGGCGCTCTTGCGGGCGGCCTTGGTGGCCAGCTGCTTGCGCGGGGCCTTGCCGCCGGTGGACTTGCGGGCAGTCTGCTTCGTACGGGCCAT
s HiC_scaffold_1 163856336 413 + 233722169 CACTTAAGCTCTCTCTCCCCGAATCCAGTGGGACAACTGGATGTCTGTGGGTACAGTGGTGGCTCTCTTAGCATGGATAACACACAGATTAATATTTTCAGATAAGCCCACCAGGAATGCTTCACGAGTCTCCTGAAGGGCACCAGTGGCTGCGCTCTGAAACCTCAAGTCACTTTTGAAATCCTGGGCAATCTCTCTCACCAACCTCTAGAAAGGTAGCTTCTGAATGAGAAGCTGGGTGGATTTCTGGTAACCGCAAATCTCTCTAAGTTCCACGGTACCAGGCATGCAGCAATGAGGTGTCTTCACCCCACCAGTAGAGGGAGCGCTTTTGCCAGCAGCTTTAGTAGTCAGATATTTGTG-GGGGGAGGGGCACCAGCGGACTTCCACGCAGTCTGCTTGGCTCTAGCTAT

a score=26723
s chr3           96239758 496 + 160039680 CAACTCTTTATCTGATTCAGTGGGTGGCTCTGAAAAGAGCCTTTTTAGGAGCTCGCGGGGGTTATATCACAGAGACGCGGGCCGACGCGAGCAGTGGCCTCACTTGCCCTTCGCCTTATGGTGGCTCTCCGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGCGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCACCCACACGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCTTGCTTGCCACGACCGGACATCACG
s HiC_scaffold_1 92249017 462 + 233722169 CAGCCCTTCCTTTGACACTGTAG-TGGCTCTTAAAAGAGCCTTT--------------GGGTGA----------AGGGGGGCAGATTTAA---------TTATTTGTTCTTGCCAGGCTTGTGACTCTCCGTTTTCTTGGGCAACAAGACAGCCTGGATATTGGGCAAGACGCCGCCCTGGGCAATGGTGACACCTCCGAGTAACTTGTTCAGTTCTTCGTCGTTTCTCACCGCTAACTGCAGGTGGCGAGGGATGATGCGCGTCTTCTTATTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATTTCGGCCGTCAAGTACTCGAGCACCGCGGCCAGGTAGACTGGGGCGCCGGCCCCCACCCGCTCGGCGTAGTTGCCCTTGCGCAGCAGGCGGTGCACTCGGCCCACCGGGAACTGCAGCCCGGCGCGAGAGGAGCGCGACTTGGCCTTAGCCCGAGCCTTGCCTCCTTGCTTTCCGCGTCCCGACATTACG

a score=80237
s chr3           96245271 2103 + 160039680 GAGAAACAGCGAGCAGGCCCAGC----CGCCCGGCGACCCGCGGAGTGTCGCAACGACGGCCGCACGCAAATGAAGCCACCGAGCACGC-GCGTCGTGATTCGCGCGTTCCAGGGCGGCGCCGGGGCGAGGGAGCCGGTCTTATGTAAATGAGAGGCTTCTGTCCGCGCGCTCCTATTGGCCACGGCGTCAG-GACGCGTGTGAGCCAATGAGAGCGTCGGGCGGACAATCGGGTCTGCGTCTATAAAAGAGTGAGGCGTCG------GCGCCGGAGTACC--GTTTCCTGGTTGTGGCCGTTCGTCTGTTTGCGCTTTCGTGATGTCCGGTCGTGGCAAGCAAGGAGGCAAGGCCCGCGCCAAGGCCAAGTCGCGGTCTTCCCGGGCCGGGCTACAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGTGTGGGTGCCGGCGCGCCGGTATACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCACCTGCAGCTGGCCATCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCAAAGTGACGATCGCGCAGGGCGGCGTCCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAGACGGAGAGCCACCATAAGGCGAAGGGCAAGTGAGGCCACTG-----------CTCGCGTCGGCCCGCGTCTCTGTGATATAACCCCCGCGAGCTCCTAAAAAGGCTCTTTTCAGAGCCACCCACTGAATCAGATAAA---GAGTTGTGTCACGGTAGCCGGTCTTGGTGGCCTTTCCTGGCCCTGCCCCAAAAGTA------------------------AGAGTGTCGTGTCCTCTGCTTCCTTGCCCATCCTGCCCGTGGTTCCCCCTGGTAGTTTGTTGTCGCTCTTTGGTTCATGCCCTGCCTCGGCGGAGCGGATACGCGGTTCTCG--------------CTGACCGTCCCAAGCATTTAGCCC-CTATCTGCCCACACCCTTGTCCTACACAACAC-------------------TGTCCCTCACTCAGCGTCCACCCGCCTGACCCTTCCCAGGACTAAGACTCAACTAGGACG-----------TCTAGGCCAATCTAGACATAAGT------CGCAG--------------------------------TCAGCCGCGCTCTCGTCCGGTCCT-------------TGGGGAATG------------TCTAGG---------------------AGGAGGAGGTGTCCCGCGAG-GACTGGACGCGGCCGGCTCTAGGGATCATGGgggactgggg---ctgggactgtggctgtggctgggCGGTGCTGCACAAACACTAGA---TTAGTTCTGCCCTGGGACTTTgggcggcgggcgggg----------gcgcgcgAGCTCCTCTTGG---------------------GCAGAGCCGG--GACCCGCCCTCTACGGGCAGCTGCCAGACGTGGCT-----------------------CCACCCTCGCAGAACGTTGGCAAGTGGACCGggcgcggggctggacgtggggggcgggggggggcg-ggtcaggtggcgtggcg-ggcccgagccaatgggcgaggtcggggccggTGACGCCACGGCCAATGGCGCGGCAGCGCGGGAGTTTCAAGTCGCTGTCTCCGCCCCGCCGCGGGGAAGACTGCGCCTATAAAGGCG------GCCGGCTCGGGCCGGTATCAGGTCCCCGAGTGCT-CCTCGTTTGGGTGTCTTCCGTCTTCGCCATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAA-----------GCGCCCTGTCT---CCCATCCATTCCCCACAAAGGCTCTTTTCAGAGCC-ACCACAGCTTCCCGGAAAGAGCTATTCAGCTT
s HiC_scaffold_1 92227660 2317 + 233722169 GACAAGCGCCGCGCCAGCCCGGCGGGGCACTCCGCGACGCCAGGATATTTATAGAG---GCCGCATGCAAATGAGGGTTTCGGACGCGCAGCGCTGCGATTCGCGAGTTCTCAG-CGGAGCGGAGGCGTGGGGGACGAGATTATGTAAATGAGTAGAATCTGGCCAAGCTCTCCTATTGGCCCTCAGGCCAAAGCCAGGTTTTAACCAATGAGCGTGCTTCGCGGACAATCCGCGCTCTGGCTATAAAAGGGTGAAGCGTCACCGTTCGCGACGGTTTTCCCGGTGTTTGAGTGGTAGCTGCTTGT-GGTGCGGGTCGCTGTGATGTCTGGCCGAGGCAAGCAAGGAGGCAAGGCCCGCGCTAAGGCCAAGTCGCGCTCCTCCCGCGCCGGGCTGCAGTTCCCGGTGGGTCGGGTGCACCGCCTACTGCGCAAGGGCAACTACGCCGAGCGGGTGGGTGCCGGCGCACCCGTCTACATGGCGGCTGTGCTCGAGTACCTGACGGCCGAGATCCTGGAGCTGGCTGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCTCGCCACCTGCAGCTGGCTATTCGCAACGACGAGGAGCTGAACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGTTCTGCCCAACATCCAGGCGGTGCTGCTCCCGAAGAAGACGGAGAGTCACCACAAGGCGAAGGGCAAGTGAGGCCTCCGGGCGGAGGCCCCCCGCG-CAACGCGCGCCCCTGAGG---GGCGCTTGTGAAATC----AAAGGCTCTTTTCAGAGCCACCCACTCTTTCAAGTAAAAAGGAGTTGT-------CAACAGATCCAGGT--TCCTCCCGACCTTTTTCCCAGCAGTACACGCCGAGCCCAGGGATGGGACGGGAGGGCAGTGAGCGC--CTTCTGCACTCCGCTTGCATCCGCGTCCCCCTGCCGGTTT---------CTTGGGCTCACTCCCTACCTCGCCCGGGTCGGGCCGTGGACCTTGGGAGTTGCTCACCTCAGGCCG-CGCAAACATCTCGCGGGCGGGCCGCGTAGCACTCTGCGATGAACGCTAAGGCCAGGGGCGGAGCCGAGTGCCCCCCGCCC-----CCGCGGGCCTTGGCTGCCCTAG---CGAGGTGCAGTTCGGGCGGGGCGCTGTTGTCGCCGCCGCGCCTAACGGGAGTGGAACGCGCAGGTTTCGGTAGCGTGGAGGGTCTCGGTCTGAGCTTCGCCGGGCTCTCTTGCACACCTGACGTAGCCCCCGTGGCGGACACTGACTCGCCCCTCTGGGCTTTCGCAGCGTGACTTCCCCAAGACCACGCTCCCATCGAAAGGCTACGAACAGGCGGC-CGAGAGGTGACCGGCTGCCAGAGTGCCCTGAAAGGTGCAAGGGGCTGGGGGGAAGGGGACGAAAAGTTGAGTCTCAACTCCGGACCCACACT----GCAGCGCACGAGGCAAAGGGCTCTCGCGGCAGTCCGTTTTGAAAGAAAGGATGAGGGTCCCAAGGGGGACCGACTGACTGACTCTTGAGCAGCAGCGCTCAGAGGCCACTTGCACTCAGACAGCCACTGCATACCAGGTCCGGAAACTGCTGGCAGAGGGGGAAAGCGGAGAGCGAGGCG---GGGACGGGGCGGGACGCGGCCAGGCTG---GGCGCGGCCCGAGCCAATGAACGGCTCGGGGGCGGGTGGCGTCACAGCCAATGGCCCGCCAGCGCGGGCCTTTCAATTGTTTTTTCCCGCCCAATCG-GGAAATGACTGTGCCTATAAAAGGCTGCTGCGCCAGTCCTGCGCGTCGTTAAGGTCCTAACCGCTGCCCCGTCAGTTTCGTGTCCCTGTACGCTATGGCCCGAACGAAGCAGACCGCCCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCTTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGCTTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGCGCGCCTAAGCAGGAAGCGCGCGCCTCGCCTCGCCCGGTCCATCGCACACAAAGGCTCTTTTCAGAGCCAACCACGGCGGCACTTGAAGGGCTGTACCGCTT

a score=23039
s chr3           96245583 394 + 160039680 TCCGGTCGTGGCAAGCAAGGAGGCAAGGCCCGCGCCAAGGCCAAGTCGCGGTCTTCCCGGGCCGGGCTACAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGTGTGGGTGCCGGCGCGCCGGTATACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCACCTGCAGCTGGCCATCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCAAAGTGACGATCGCGCAGGGCGGCGTCCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAGACGGAGAGCCACCATAAGGCGAAGGGCAAGTGAGGCC
s HiC_scaffold_1 92248571 379 + 233722169 TCTGGCCGTGGTAAGCAAGGAGGCAAGGCCCGCGCCAAGGCCAAGTCGTGCTCCTCGCGCGCCGGGCTGCAGTTCCCGGTGGGTCGGGTGCGCTGCCCGCTGCGCAGGGGTAACTACGCCAGGCAGGTGGGGGCCGGCGCGCCAGTCTACGTGGCTGCGGTGCTCTATTACCTGACGGCTGAGATCTTGGAGATGGCGGGCAATGCGGGCCGCAACAAGAAAA-------CATCATCTCTCGCCACTTGCAGCTGACTATCCGCAATAAT---GAGCTGAATGAGCTTTTGGGCAAAGTCACCATCGCCCAGGGCGGCGTTCTGCCCAACATCCAGGCTGTTCTGttaccaaagaaaacaaag-----ttgcaaagccaaaagcaaataaaacc

a score=38844
s chr3           96268692 488 + 160039680 TATGGCCCGTACGAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAA-----------GCGCCCTGTTTCCCT---TCCATCCCCCACAAAGGCTCTTTTCAGAGCCACCTACGTTGTCGATGAAAGTAGCTGTGTC
s HiC_scaffold_1 92229472 501 + 233722169 TATGGCCCGAACGAAGCAGACCGCCCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCTTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGCTTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGCGCGCCTAAGCAGGAAGCGCGCGCCTCGCCTCGCCCGGTCCATCGCACACAAAGGCTCTTTTCAGAGCCAACCACGGCGGCACTTGAAG-GGCTGTACC

a score=30908
s chr3           96269638 567 + 160039680 CGTGTGAAACC-TCATTTGCATACAAGCTCTATAAGTACC---GCATAGCAA--------GCCGCGCTGAAACAGTTCGTAGTTGCCCGGTCTACCTTA--CGTTGCATCTTTAGACGCGGAGGAAAATGCCGGATCCAGCGAAGTCTGCTCCTGCCCCAAAGAAGGGCTCTAAGAAAGCTGTCACGAAAGTGCAGAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCTGTTTACGTGTACAAGGTCCTGAAGCAAGTGCACCCCGACACGGGCATCTCATCTAAGGCTATGGGAATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATCGCAGGTGAGGCTTCCCGTCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACAGCCGTGCGTCTGCTGCTGCCGGGAGAGTTGGCTAAACACGCTGTGTCGGAAGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTGAAGTGCAGCAGAGACGTGATTGATCGGCTTTACCCA------------AAAGGCTCTTTTCAGAGCCACTTTAGTTCTCAAAAAAA
s HiC_scaffold_1 92215599 577 + 233722169 CGTCCGAAACCCTCATTTGCATGCGGCCTCTATAAATATCCTGGCGTCGCGGAGTGCCCCGCCGGGCTGGCGCGGCGCTTGTCTACTTGTTAGGGGTTATCCCTGGTGGCTCTTGGCGC-------CATGCCGGAGCCGGCCAAGTCCGCTCCGGCTCCCAAGAAGGGCTCCAAAAAGGCTGTCACCAAAGCCCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACGGGCATCTCGTCCAAGGCCATGGGCATCACGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGCGAGGCGTCTCGCCTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAAGTG-AGTGC--------CGTTCGTACTTGGCGCTCCCCGGCCACGCTTTGCAAAGGCTCTTTTCAGAGCCACCCACCTCGTCAAGAGAA

a score=12507
s chr3            96284143 540 + 160039680 TCCATGTGTTGCAAGATCCCTTTGGTATAGGTCTCCTTTCAAATG---TCTGATTACCCAGCTT--------GTCTCAGCCGGATCCAG-TCTGTATA-------TTTGCTTTATTTAAGAGTTGCATGCCATGGT-CCCACAGTTTCAGG---------------GTCAACTTTGGGAAGTTTGTGCCCCAGTACTGTCACTGGGAGGAAGGGGTTCAGGCTGCTC--GGGTCCACAGTCACCCACTGAGC-----TTCGAGGTCCATCGGGCGCTTCTTTTGGTGTGGTCTGGCTCGCAGTGGCTGTTACTTCTTCATACACGCCATCGCTTCT---------------AACTTGCTGAAAGGAATTTGCTTTCTTTCCCTGCTCAGAAACCAAAGGGACTTCTAAGTTGTATTTCTTCTCTCTCTGCAGCC---TGTGTATTTTCACATAGAGAACCGTGTTCAACGAAAACATTATTCCCACTGACAGATAAAACAGGATGTGAAACCAGACAGGAGCTGATGACTGGGGACCTGAAACAGAGAAA----------AAATCCTTTAGACATCGGAGAGACCCAGCCAAGTTACATTTGGAAGAAAA
s HiC_scaffold_1 128262693 595 + 233722169 ttcaaatttttcataatttctttag---aGGTCTCATCTTAAATTATCTTTCATTACCAAATTTCTACATTTGTCTTAACTGAAGTCAGCTTTACTTAACTGAAGTCTGCTTTACTTGTCTTAAGTCAGCTATGGAACCCACAGTTATAAGCTTTGGAAAgtgacatttaattttcagatatttatgtCTAAGCACTACCACAGTGAGGAAGAGGCAGGGGCTGTCCCTAAATCTATGGTCACCCTCTGAGCAAACGCTTGTCTCCCTGCCAGCGCTTCC----ATGTGTCCTTTCTTGCTGTGGGTCTTGTTCCTG---ATACTTCATCTCTTCTTCTAAATGTCTTTGGGATTTTCCGAAG-----TTACTTCTTCTCCATGATCAGAAGCTGAAGAGATTTCTAAATTCTGCTTTCTCTCGCTTGgcagttctttacatattctcaaACAGAGAATAGTATCTGCCAAATACATTATGCTCAGTGGCATATAGAAAAGGATGTGAAGCCAGACAAAAATTAGTGACTGGAGgtctgaaacagaaaaacagagaagagacaCTATTTACACACCAGAGGGATCTGGCTGAGTTCTGTCTGGAATGAGA

a score=14658
s chr3           96284143 540 + 160039680 TCCATGTGTTGCAAGATCCCTTTGGTATAGGTCTCCTTTCAAATG---TCTGATTACCCAGCTT--------GTCTCAGCCGGATCCAGTCTGTATATTTGCTTTATTTAAGAGTTGCATGCCATGGT-CCCACAGTTTCAGGG--------------TCAACTTTGGGAAGTTTGTGCCCCAGTACTGTCACTGGGAGGAAGGGGTTCAGGCTGCTC--GGGTCCACAGTCACCCACTGAGC-----TTCGAGGTCCATCGGGCGCTTCTTTTGGTGTGGTCTGGCTCGCAGTGGCTGTTACTTCTTCATACACGCCATCGCTTCTAACTTGCTGAAAG-------GAATTTGCTTTCTTTCCCTGCTCAGAAACCAAAGGGACTTCTAAGTTGTATTTCTTCTCTCTCTGCAGCC---TGTGTATTTTCACATAGAGAACCGTGTTCAACGAAAACATTATTCCCACTGACAGATAAAACAGGATGTGAAACCAGACAGGAGCTGATGACTGGGGACCTGAAACAGAGAAAAA----------ATCCTTTAGACATCGGAGAGACCCAGCCAAGTTACATTTGGAAGAAAA
s HiC_scaffold_1 96319992 574 + 233722169 tccaaatttttgatgatttctttAGAGTAAGTCTCGTCTTAAATTATCTTTCATTACCAAATTTCTACATTTGTCTCAACTGAAGTCAG------------CTTTCTTTAACAGTTACAAGCTATGGAACCCACAGTTATAAGTATGCAATGTAACATtcaattttcagatatttgtgTCTAAGCGCTACCACAGTGAAGAAGAGGCAGGAGCTGTCCCTAAATCTATGGTCACCCTTTGAGCAAATGTTTGTCTCCCTGCCAGGGCTTC----AGTGTGTCCTTTCTTGCTATGGGTCTTGTTCCTG---ATACTTCACCTCTCCTAAATGTCTTTGGGATTTTCTGAAGTTACTTCCTCTCCATGATCAGAAGCTGAAGAGATTTCTAAATTCCACTTTCTCTCGCTTGGCAATTCTTTGCATATTCTCACACAGAGAATAGTATCTGCCAAAAACATTATGCCCAATGACATACAGAAAAGGATGTAAAGTCAGACAGAAATTTGTGACTGGAGgcctgaaacagaaaaaaagagaagagacacTACTTAGACACCACAAGTACCTGGCTGAGTTCTGTTTGGAATGAGA

a score=45667
s chr3           96285507 1755 + 160039680 agcaatagagatcctaaGACAATCCTAGTGTCTTCTG------TAGTGAGTGGGGG-Tagcaaaggagattaaagagagggatgcaggacaaaatg----aaggaaaccatcaggagggaaaataagataaaggaaaggaataaagaaaggaaaacgtgagagacagggaggaaggagaagaga---gaagaaaTTCAGGGAAGGCTGGAGGGTG---ACTGCAGTTCTGAAGGAGGCGTAGAGTG-----------------------------TTCCTCTTCCAGGCTGGACTA-CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGAC------ACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCT----GTCACTGTTCTTTTCATGAGACTCCCTCCCCTTTCTCCTCAAGAGAATGGGTCTCC----------CCCAT-----------TGCCAGC-----AGAGAGGCAT-------GATTTCTAAAAGCCGTGACTGTGGCCTCCAGC--------------AGAGGGGCTTCTCATTGCA-AAAGCGAGCTTCGCTGCATGGCTCTATTTATTACGAAGCCATAGAGCCTCAGGTTAGT-AGCCACCCCAAGTCAGCACTAAGATGCA--CTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTACTC-----AAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTT------AGGACGGGAACACCTCGCCAGTGAACAAGAGGAT---GAGAAAGGTAAGCTGTGGAG-----AGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGACGACACA-TGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGATTAAAGAAAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTTG----AGTCCCTGGCTTTAG--GGCTAAAAT-AAGTTGATGAAG-GGACAGTCACTATCCCCTGACTGTGA----------------CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTCT--TGCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGG------TGTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAATCT---GAAGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAAGTG---AGGGCCCACAGTGTTTGCAA
s HiC_scaffold_1 96320946 1852 + 233722169 AGCAGCAGA-----CAGGAGAAGCTCAGTATATTCTGGTGAGATGGTTGGTGAGGGACAGGGCAGGGATGCGAATGGAGGAGTGGGCAACAAGGTGGTACAAGAGTGACAGGAAGCGAGAACAGAAaatgaaggaggagaagaaaagagggaaga-atgagatgaagggaaggaaaataaaaggcaggAAGGGAAACAATGAAGTTTGTGAAGAGCATATTGAACTTCTGAACCAGTGGTGGAAAGGCCCAACGCCAAGCTTTTCCTAAAAACACTTCCTCCTACTGGCTGGGCCATCAAACCCCTAAACAAGCCTCAGCCTCAGGGCAGCAAATGGCCCCTTCTCCTTTGCCAGTTACTTCCAATCCTCACTCACCAGGCACTTGAAGCTCCAACACAGGGCTGCGCTTAAGGACATTTCCATCTTCTGTGGCTGCCTCACACCAGTAGGATCCAGAACCACTTTTTCCAGCAGTTAGGATGTGGTGCTCAGAGGATGTATTCCTGCCCCTCAGCGTCTTGTGGCCCATGTGGAAGGAGAAGTAAAGCTGCACGCCAGACCTCTGTGGGAGCAACTTTGTCTCACAGCTCAGCTTGGCTAGTTTCCTCTGCTGAAGTGGGGATCCTCTGCGGAAGGATGAGGTTAGCACTGGAGCTGGAAACAGCTCTGAAGAGAAAGTTGATAGGGGACAGAGTTGTCTCCTTCAGCATCAAGGTTC-TTTCACAAGG--TCATACCCTCTCCCACCTTGGAAACTTGTCTCCAAAAATTGCATCCATAAGCTGAATTCTTCCAGCTTACAAGACAGTCATTATGGGGGTTTCCTAACAGACATAATTAACACTATCAGCTTGCTTGCATCCATAGAGGGGAATTCCTTTATATGGCCCAATCTTCCCTGAATGGCCATG-ATATTATATAAC--TGCACCCTCTTGGTAATGATCTACCCAGAGTAGGCACTAGCTCACATCCTTGCCAGTTCAGTG----ATTCCTTACTTGTGCTCCTCTCTCAAAACAATAATTTGACACAGTAATTTCCTTTTCAcaggaatgaatttttttttggggggggacgGAAAAATGTCACTGGTGACTGTGGGTGTTAAGAGGAAGAAAGATCATGAAATAGTCAGAGCAAGAGCTACATGTAAACTTGGACAGGGGAAGCTGTTTAGTTTGCAGATGTTTAGAGAGAAGTAGGGCCAGAAAGGCTGTACTGTCCTTGAGAGAC-------AGATGAAACCAGCTCCTAATGTCTTGCTGGTTTTCACTTCCATGGAGCATTCATGAAATTCTACTGGGCTATTTTCTAATA------------------------ATTCTTCTAGCTATCTTGAAGCAGTTTCTGTTCTTtgcaaactaaaatcaaattgaTAAAATGGATCTTCATTATGTCCTGGCTTTGAGTTTAGCTCCTGTGATTATTGATAGGACTTTGTATA-CTGGAAAGAGCAACAG--------AAGGGACCCA---------------------TTCACAGAAGCAGTTTATCTC-----------------------TTATGAATTGAAATGAGGATT-TAGATGATTTT-TGCTGGTCCTTTGGATCTTTACAACTATAGCTCTACAACTATTTAGATACAATACTTTTCACCATCACAGGTACTCTTGTCGATGTGAAGTGGACAGGTAATCTTCCTTTGCCTGAGCAGTGATAGATGCCACTGTGATTCATGTTGGCTTTCAGAATAGTGAGTGTAGAATCTTGATAAGTATACTTAATAGGCTTTCCATTTTGATAGAAAACCACATTGTATACCAGCTTATTCTTCCATCCATGATACCTCAAGGTCAAAGGTTCTCCTTCAGTGAGGACtctcttggaaggctgaagcagcagcCAAGCTGAAAAGAACACAGACCCCAAAATGCGTGAAA

a score=41942
s chr3            96285507 1745 + 160039680 agcaatagagatcctaaGACAATCCTAGTGTCTTCTG------TAGTGAGTGGGGG-Tagcaaaggagattaaagagagggatgcaggacaaaatg----aaggaaaccatcaggagggaaaataagataaaggaaaggaataaagaaaggaaaacgtgagagacagggaggaaggagaagaga---gaagaaaTTCAGGGAAGGCTGGAGGGTG---ACTGCAGTTCTGAAGGA--GGCGTAGAGTG---------------------------TTCCTCTTCCAGGCTGGACTA----CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGACACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCT----GTCACTGTTCTTTTCATGAG-----ACTCCCTCCC---------CTTTCTCCTCAAGAGAATGGGTC--------------TCCCCCATTGCCAGCAGAGAGGCATGA---TTTCTAAAAGCCGTGACTGTGGCCTCCAGC--------------AGAGGGGCTTCTCATTGCAAAAG--CGAGCTTCGCTGCATGGCTCTATTTATTACGAAGCCATAGAGCCTCAGGTTAGT-AGCCACCCCAAGTCAGCACTAAGATGCA--CTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTA----CTCAAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTTAGGACGGGAACACCTCGCCAGTGAACAAGAGGATGAGAAAGGTAAGCTGTGGAG-----AGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGACGACACA-TGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGATTAAAGAAAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTT----GAGTCCCTGGCTTTAG--GGCTAAAATAAGTTGATGAAG-GGACAGTCACTATCCCCTGACTGTGA-------------CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTC--TTGCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGGTGTC-------------TTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAATCTGA---AGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAAGTGAGGGCCCACA
s HiC_scaffold_1 128478787 1832 + 233722169 AGCAGCAGA-----CAGGAGAAGCTCAGTATATTCTGGTGAGATGGTTGGTGAGGGACAGGGCAGGGATGTGAACAGAAAAGTGGGCAACAAGGTGGCACAAGAGTGACAGcaagtgagaaaacaaaatgaaggagaagaa--aagaaggaagaa--tgagatgaagggaaggaaaataaaaggcaggAAGGGAAACAATGAAGTCTGTGAAGTGCATATTAAAGTTCTGAACCAATGGTGCAAAGGCCCAACCCCAAGCTTTTCCTAGAAACACTTCCTCCTTCTGGCTGGGCCATCACCAAACCCCTAAACAAGCCTCAGCTCCATGGCAGCAAATGTCCCCTTCTCCTTTGCCAGTGGCTTCCAATCCTCACTGATCACACACTTGAAGCTCCAACACAGGGCTGTGCTTAAGGGCATTTCCATCTTCTGTGGCTGCCTCACACCAGTAGGCCCCAGAACCATTTGTTCTAGCAGTTAGAATGTGGTACTCAGAGGATGTATTCCTGGCCCTCAGCGTCATGTTGCCCATGTGGAAGGAGAAGTAAAGCTGCACGCCAGAACTCTATGGGAGCAACTTTGTCTCACAGCTCAGCTTGACTAGTTTCCTCTGCCAAGGTGGGGATGACAAGGCTGAGATTAGCACTGGATGTGGAAACAGCTTTGAAGGGAAAGTTGATAGGGGACAGAGTTGTCTCCTTCAGCATCAAGGTTC-TTTCACAAGGTCATACCCTCTCCCACCTTGGAAACTTGTCCCCAAGAAATTGCATCCATAAGCTGAATTTTTCCCGCTTAAAAGAGGGTCGCTATGGAGTTTCCTAACAGACATAATTAAGGCCACCAGCTTGCTTGCATCCATAGAGGAGAATTCCTTTATATGGGCCCAATCTTCTCCAAAAGGTCATG-TTATTATATGAC--TGCATCCTCTTACTAATGATCTACCCAGAGTAGGCACTAGCTCACATCCTTGCCAGTTCAGTG----ATTCCTTACTTGTGCTCCTCTCTCAAACAATAATCTGAGACAGTAATTTTGTTCCCCcaggaatgaatt-tttttttgatgGAAAAATGTCACTGGTGACTATGGGTGCTAAGAGGAAAGATCTTGGAATAGTCAGAGCAAGAGCTACATGTAAACTTGGACAGGTGAAGCTGATTAGTTTGCAGATGTTCAGAGAGAAGTAGGACCAGAAAGGCTGTACTGTCCTTGAGAGACAGATGAAAAGTTTAACCAGCTCCTACTGTCTTTCTGGTTTGCACTTCCATGGTACATTCATGAAATTCTACTGGGCTATTT------TCTAATAAC------------------TCTTCTAGCTAACTTGAAGGAGTCTCTGTTCTTtgcaaataaaaatcaattgATAAAATGGGTTTTCCTTATGTTCTGGCTTTGAGTTTAGCTCCTGTGATTGATAGGACATGGTATA-CGGGAAAGAGCAACGG--------AAGAGACCCACACACT---------------------GAAGCAGTTTATCTC-----------------------TTATGAATTGAAATGAGGATT-TAGATGA-TTTATGCTTGGCCTTTGGATCTTTACAACTAGAGCTCTATAACTATTTAGATACAATACCTTTCACCATCACAGGTACTCTTGTTGACGTGAAG-GGTACAGGTGAAGGGACAGGTCCCTTGCCTGAGCGGTGATACACACTACTGTGATTCATGTTGGCTTTCAGAATAGTGAGTGCAGAATCTCGATCAGAAAACTTAATAGGCTTCCTGTTTGGATAGAAGACCACATTATATACCAGCTTATTCTTCCATCCATGACACCTCATGGTCAAAGGTTTTCCTTCAGTGAGGACtctcttggaaggctgaagcgGCAGccaagctgaaaaaaaaaagacccca

a score=38192
s chr3            96285547 1692 + 160039680 TGAGTGGG------GGTagcaaaggagattaaagagagggatgcaggacaaaatgaaggaaaccatcaggagggaaaataagataaaggaaaggaataaagaaaggaaaacgtgagagacagggaggaaggagaagagagaagaaa----TTCAGGGAAGGCTGGAGGG---TGACTGCAG----TTCTGAAGGAGGCGTAGAGTGTTCCTCTTCCAGGCTGGACTA----CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGAC------ACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCT----GTCACTGTTCTTTTCATGAG-----ACTCCCTCCC---------CTTTCTCCTCAAGAGAATGGGTC-------------TCCCCCATTGCCAGCAGAGAGGCATGATT-------TCTAAAAGCCGTGACTGTGGCCTCCAGC--------------AGAGGGGCTTCTCATTGCA-AAAGCGAGCTTCGCTGCATGGCTCTATTTATTACGAAGCCATAGAGCCTCAGGTTAGT-AGCCACCCCAAGTCAGCACTAAGATGCA--CTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTACTC----AAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTTAGGACGGGAACACCTCGCCAGTGAACAAGAG----GATGAGAAAGGTAA-GCTGTGGAGAGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGA-CGACACATGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGATTAAAGAAAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTT----GAGTCCCTGGCTTTAG--GGCTAAAAT-AAGTTGATGAAG-GGACAGTCACTATCCCCTGACTGTGA-------------CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTC--TTGCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGG------TGTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAATCTGAAGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAA
s HiC_scaffold_1 128067401 1727 + 233722169 TAAGTGGGCCAAAAGGTGGCACAAGAG--TGACAGGAAGCGTG-AACAGAaaatgaaggagaagaaaagaagtaagaatgagatgaagggaaggaa--aataaaaggcaggAAGGGAAACAATGACGTCTGTGAAGAGCATATTAAAGTTCTCAACCAATGGTGGAAAGGCCCAACCCCAAGCTTTTCCTAGAAAGAC--------TTGCTCCTTCTGGCTGGGCCATCATCAAACCCCTAAACAAGCCTCAGCTCCATGGCAGCAAATGGCCCCTTCTCCTTTGCCAGTGGCTTCCAATCCTCACTCACCAGGCACTTCAACCTCTGACACAGGGCTGCGCTTAAGGACATTTCCATCTTCTGTGGCTGCCTCACACCAGTAGGACCCAGAACCATTTGTTCTAGCAGTTAGATTGTGGTACTCAGAGGATGTATTCCTGGAACTCAGCGTCATGTTGCCCATGTGGAAGGAGAAGTAAAGCTGCATGCCAGACCTCTGTGGGAGCAACTTTGTCTCACAGCTCAGCTTG---AGTTTCCTCTGCCGAGGTGGGGATCCTCTACCGAAGGATGAGGTTAGCACTGGAGCTGGAAACAACTCTGAAGAGAAAGTTGATAGGGCACAGAGTTGTCTCCTTCAGCATCAAGGTTC-TTTCACAAGGTCATACCCTCTCCCACCTTGGAAACTTGTCCCCAAGAAATTGCATCCATAAGCTGAATTTTTCCCGCTTACA--AGAGAGTCACTATGGGGGTTACCTAACAGACATAATTAAGGCTATCAACTTGCTTGAATCCATATAGGAGAATTCTTTTATATGGCCCAAATTTCCCCGAATGGCCATG-TTATTATATAAC--TGCACCCTCTTGGTAATGATCTGCCCAGAGTAGGCAATAGCTCACATCCTTTCCAGTTCAGTG----ATTCCCTACTTGTGCTCCTCTCTTAAACAATAATCCGAGATAGTAATTTCGTTCCCACAGGAATgaa-tgtttttttaatggaaa-atgtcACCGATGACTATGGGTGCTAACCGGAAAGATCATGAAATGGTCAGAGCAAGAACTACATGTAAACTTGGACAGGGGAAGGTGCTTAGTTTGCAGATGTTTAGAGAGAAGTAGGATCAGAAAGCTGTAC-TGTCCTAGAGAGAC-------AGATGAAACCAGCTCCTAATGTCTTGC---TTTCAACTTCCATGAGCA-TTCATGAAATTGTACTGGGCTATTT------TCTAATAAC------------------TTTTCTAGCTACCTTGAAGGAGTCTCTGTTCTTtgcaaactaaaatcaaattgaTAAAATAGGTCTTCATTATGTCCTGACTTTGAGTTTAGCTCCTGTGATTGATAGGACATGGTATA-CTGGAAAGATCAACGGATGGGCCCACTCA-------------------------CTT-----AAGCAGTTTATCTC-----------------------TTACGAATTGAAATGAGGGTT-TAGATGA-TTTATGCTGGTCCTTTGGATCTTTACAACTATAGCTCTATAACCATTTAGATACACTATCTTTCACCATCACAGGTACTCCTGTCAATGTGAAGGGGGCAGGTGATCTTCCTTTGCCTGAGCAGTGATAGACACCACTGTGATTCACGTTGGCTTTCAGAATAGTGAGTGCAGAATCTGGATAATACTTAACAGGCTTTCCCTTTTGATAGAAAACCACATTGTATACCAGCTTATTCTTCCATCCATGACACCTCGAGGTCAAAGGTTTTCCTTCAGTGAGGACtctcttggaaggctgaagcagcagcCAAGTTGAAAA

a score=39186
s chr3            96285549 1690 + 160039680 AGTGGG------GGTagcaaaggagattaaagagagggatgcaggacaaaatgaaggaaaccatcaggagggaaaataagataaaggaaaggaataaagaaaggaaaacgtgagagacagggaggaaggagaagagagaa--gaaaTTCAGGG--AAGGCTGGAGGG---TGACTGCAG----TTCTGAAGGAGGCGTAGAGTGTTCCTCTTCCAGGCTGGACTA----CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGAC------ACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCT----GTCACTGTTCTTTTCATGAGACT----CCCTCCCC-----------TTTCTCCTCAAGAGAATGGGTC-------------TCCCCCATTGCCAGCAGAGAGGCAT-------GATTTCTAAAAGCCGTGACTGTGGCCTCCAGC--------------AGAGGGGCTTCTCATTGCA-AAAGCGAGCTTCGCTGCATGGCTCTATTTATTACGAAGCCATAGAGCCTCAGGTTAGTAGCCACCCCAAGTCAGCACTAAGATGCA--CTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTACTC----AAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTTAGGACGGGAACACCTCGCCAGTGAACAAGAG----GATGAGAAAGGTAA-GCTGTGGAGAGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGACGACACA-TGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGA----------------TTAAAGA-----AAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTTGAGTCCCTGGCTTTAGGGCTAAAAT-AAGTTGATGAAG-GGACAGTCACTATCCCCTGACTGTGA----------------CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTC--TTGCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGGT------GTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAATCT---GAAGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAA
s HiC_scaffold_1 128263739 1744 + 233722169 AGTGGGCAACAAGGTGGCACAGGAGTGACAGGAAGTGAGAacag---aaaatgaaggaag--------------aatgagatgaagggaaggaa--aataaaggGCAGGAAGGGAAACAATGAAATCCCTGAAGAGCATATTAAAGTTCTGAACCAATGGTGGAAAGGCCCGACCCCAAGCTTTTCCTAGAAAGAC--------TTGCTCCTTCTGGCTGGGCCATCATCAAACCCCTAAACAAGCCTCAGCTCCATGGTAGCAAATGTCCCCTTCTCCTTTGCCAGTGGCTTCCAATCCTCACTCACCAGGCACTTGTAGCTCCAACACAGGGCTGCGTTTAAGGACATTTCCATCTTCTGTGGCTGCCTCACACCAGTAGGAACCAGAACCATTTGTTCTAGCAGTTAGAATCTGGTACTCAGAGGATGTATTCCTGGCCCTCAGCGTCATGTTGCCCATGTGGAAGGAGAAGTACAGCTGCACGCCAGACCTCTGTGGGAGCAACTTTGTCTCACAGCTCAGCTTGACTATTTTCCTATGCCGAAGTGGGGATCTTCTGCCAAAGGATGAGGTTAGCACTGGAGCTGGAAACAACTCTGAAGAGAAAGTTGATAGGGGACAGAGTTGTCTCCTTCAGCATCAAGGTTC-TTTCATAAGAGTCATACCCTCTCCCACCATGGAAACTTGTCCCAAAGATATTGCATCCATAAGCTGAATTTTTTCCACTTACA--AGAGAGTCACTATGGGGGTTTCCTAACAGACATAATTAAGGCTACCAGCTTGCTTGCATCCATAGAGGAGAATTCCTTTATATGGCCCAATCTTCCCCTAATGGCCATG-TTATTATATAACTGCACCCCCTT-GGTAATGATCTGCTCAGAGTAGGCACTAGCTCACATCCTTGCCAGTTCAGTG----ATTCCCTACTTGTGCTCCTCTTTTAAACAATAATCCGAGATAGTAATTTCGTTCCCACAGGAATGAatt-ttttttgaatggaaaaatgtCACAGGGGACTGTGGGTGTTAACAAGAAAGATCATGAAATGGTCAGAGCAAGAGCTACATGTAAACTCAGACAGGGGAAGGTGCTTAGTTTTCAGATGTTTAGAAAGAAGTAGGACCAGAAAGGCTGTACTGTCCTTGAGAGAC-------GGATGAAACCAGCTCCTAATGTTTTCC--------ACTTCCATGCAGCATTCATGAAATTCTACTGGGCTCTCTAGTAACTCTTTTAGAGACCTTGAAGGAGTAGAC------------TGAAGAGAGACTCTTGAAGGAGTC---TCTCTTGTTTGCAAATGAAAATCGCATTGATAAAATGGGTCTTCATTATGTCCTGACTTTGAGTTTAGCTCCTGTGATTATTGATACGACATGGTATA-CTGGAAAGAGCAACGGAT---GAGACCAA--------------------------TTCACTAAAGCAGTTTATCTC-----------------------TTATGAATTGAAATGAGGGTT-TAGATGA-TTTATGCTGGTCCTTTGGATCTTTACAACTACAGTTCTATAACTATTTAGATACAATACCTTTCACTATCACAGGTACGCCTCTCGATGTGAAGGGGGCAGGTAATCTTCCTTTGCCTGAGCAGTGGTAGACACCACTGTGATTCATGTTGGCTTTCAGAATAGTGAGTGCAGAATCTTGATAAGAATACTGAATAGGCTTTCTGTTTTGATAGAAAACCACATTGTATACCAGCTTATTCTTCCATCCATGACACCTCAGTGTCAAAGGTTCTCCTTCAGTGAGGACtctcttggaaggctgaagcagcagcCAAGCTGAAAA

a score=25091
s chr3            96292173 1921 + 160039680 TCTAACACACACACAGAGGAAGACTTCGAGCCGCCTCCCCCCACACCCCCACACACACACACATCCATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCAT-TAACTGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACA---AAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAA--------CCCAGGAAGCTAGCCGCCCCGCCTTTCGGTACCCAGACTGTCCTGGGAGCTTT-TCTAGGTTGTTTGATTT--------GGATCCAGATGGTAGGGTTT----------------GGTTGCCAGTGACAGAAGCACCAGAGTTAATGAAGTGG-------GTCTCAAAC--GACAGCAAACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAAC----ACTTCCATCCACTTCTCCATTGGAAACTGAGACTCAGGCCCTTGAAGCC-----------TTCCTAGCTC---CTGAGGAGAA-AAACTTGTCT-GCTTTCTTATGAAAGGGACAGATTTGGGGGCACTGAGAATCCAGCCCAATAGGGCTACCTCTGGTTTTCTAAAATTCTGTGCTTTTCTAATCTCACTAGGCcagcgtttctcaacctgtgagttgcaaacccctggggggggggggatgtcaaatgacctctcacaggggtcacctaagaccatcagaatatacagacatttacattataattcataacagtagcaaaattacagttatgaggcagcaaatagcattatggttgggggtcaccacagcatgaggaactgcgtcagtgaggtcctggcgttgggaaggttgagaaccactgTGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGAC-------AGGAACCTGAAAAACCA--CTTTTGCCGAAAATCC-ACTCTAAATACAGAGAG------TCTAACTGAGAAATCCTCCTC-TGGCTTGTCTTCCTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAA--CCATTTGAAAGCAGGAAAGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAG-ACAGAGATTAG--TGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAGGTC-CCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT-----------------------------------------------------------------GATGCTCTCT-----TTATTCTGATG-------GAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAAAT--TAAGCAAC-----------------------------------AATAAACTATTGGATCGTTGATG-AACAGCCTTTAAACTA--GAGTTCTAGGCTAACGTGACAA--------AAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAGAATCA-------TGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT
s HiC_scaffold_1 128088523 1796 + 233722169 TCTGGCATTCACACAAAGGAAGACTTTGA------TTTCT----------------------AGTCATGCCTTATTCACCTGCGTGGATTTCCAGTTGTACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCACGTGTATTCACCACTGTCACTGAAACTTGCCGCAGTGATATTGTGTCTGGCAGTTGAGATCTGAATGGTTGTTCCATTGAGGAGCCACTGTACCGAGCTGTGCCCAGGGAACTGGGGTCCCTCACACCTCAAGGCTACATTTTCTTCTCGGAACATATTGACATATGGAGGCTGCAAGATGATCACTGCCTTTGTGAAGTCTGCTTgtgtataaaacagaaataaaaacaag-aaacaaataatcAACAA-----GTG------------GAGTGAAAGGAAGGCTCTGAGTGATTAGTAAAGTTTCATGGAAAACACACGCAAA----AATGCATCTTTATATTAATTTGAAAACATAGGCAAATTAGAATTTACATCTTTAAGAGCATGTAAGCCCCAC------------------TTCAGGAAGCTTTGTTTATGCTATCAAATCTTAATATCAGGGTTGAGACTATTGGGTTCTTAAGGAGGAACATTGGGTTGC---TGACATGGTTCTCTCTGTTGGTAAGGTAGAAGCAGCATTTAAGATAGGACAACTGACTG-----GGCCAGTTTCCTTGTCCTTGATGCTGTGTTATCTCTA----------AGGGTAAAACATAGACCCTCAGAGGCTTTTGCATTAGAAAT---GCCT---GGCTTTGAAGATATCACTATGTGGTCCTGGCTCTCTCTGCAAAGAATAAACCAGCTTGGCTCTCCTACAGAGGGGA--------------------------------------------------------------------CTAGTCTAGCTAGG-----------------GTGTGTTGGAAAAC-------------------------------------------------CCAGCAGAACA-----ACTTCTGCATT-----------------------------------------------TCTGCAGTTGTGGCTCATC----------------------------CCTGTTGTTG----------------------TATATACAGAGTTGAGCAGTCAGGAGTCATTCAGAAAACctcaaataacaagaaaaaacttaaaaaatcagGATTCTGTAAAAAATCAGACTCTGAATGTGGGAGGATTTTACATAATTTACAAGTCTTTCTCATATCTACCCTTTCCCTAAACCCTCTTCTTTAGGTCAATGATGCTTATTTTCTTTGGGAGTATAAAGGT---GGTATAAGTAA--AGTTGGGCTGGAGGCCACTCACCCACTTGCCCACCAACTGGAACTGCAAGAGACCAGAGAATAGAAACATCAGTTTGTTAGTAGGAAA------TGATAAAAGGCAAGTTGGGAATAGAAATCGATGTAGACTCAGAAGGATACCTTAGGTCTCTTGAGATTCTCTATCCCTCTTTCTCAAAAGCAAGTATCAGCTGAACTGATGGGCAttgatttacttttttccctAGGGAAAAGCCCAGGGACTGGCACAATCCAAACAAGTGCTTTACCACCATAGCTGCACCCTACCCACAATTAGGATGTTAATATGAGATTTTCAGATGTGATGCTAACTCTGGATTCCCCTTTACATTCTTTTAATGTAGtaagcaccaaaaaaaaaaaaaaaaaaaaacaaaaacaaaaacaaaaaaaccatcaaAGCCCAGATACAGTTGCCTCCATGCTCATGATTTCTATTATAAtatatcaaaggaaaacaaaatcttaaTTCCTCATTGGTGAAGCTTGTCTCCTTCTAACCA-CTTCCCTGAGTTCAACTTACTCCAAAGGAGAAGAGCTGGCAAAAGCCACATCTTCCCGCC-AAGCTGGTGAGAGCCGTAAAACCTGTAGTGTGAAAG--------AGGTTCTGATGAGGCCCAGGG-CAATGactagaaaagaggaaggaagttgCTTCTTTTGACCACATTCATCATG-------TGTCTTTCCTGGGAAATATGCCCCTAATTTT

a score=27035
s chr3            96292214 1880 + 160039680 CACACCCCCACACACACACACATC---------------------------------CATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCAT-TAACTGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACAAAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAACCCAGGAAGCTAGCCGCCCCGCCTTTCGGTACCCAGA-----CTGTCCTGGGAGCTTT-TCTAGGTTGTTTGATTTGGATCC---AGATGGTAGGGTTTGGTTGCCAGTGACAGAAGCACCAGAGTTAATGAAGTGGGTCTCA-------------AACGACAGCA--------------AACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAAC----ACTTCCATCCACTTCTCCATTGGAAACTGAGACTCAGGCCCTTGAAGCCTTC---------------CTAGCTCCTGAGGAGAAAAACTTGTCT-GCTTTCTTATGAAAGGGACAGATTTGGGGGCACTGAGAATCCAGCCCAATAGGGCTACCTCTGGTTTTCTAAAATTCTGTGCTTTTCTAATCTCACTAGGCcagcgtttctcaacctgtgagttgcaaacccctggggggggggggatgtcaaatgacctctcacaggggtcacctaagaccatcagaatatacagacatttacattataattcataacagtagcaaaattacagttatgaggcagcaaatagcattatggttgggggtcaccacagcatgaggaactgcgtcagtgaggtcctggcgttgggaaggttgagaaccactgTGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGACAG------GAACCTGAAAAACCACTTTTGCCGAAAATCC--ACTCTAAATACAGAGAG------TCTAACTGAGAAATCCTCCTCTGGCTTGTCTTC-CTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAACCATTTGAAAGCAGGAAAGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAG-ACAGAGATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAG-GTCCCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT------------------------------------------------GATGCTCT--------------------------------CTTTATTCTGATG-GAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAA---ATTAAGCAACAATAA----------ACTATTGGATCGTTGATG-AACAGCCTTTAAACTA--GAGTTCTAGGCTAACGT------------------GACAAAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAGAATCA-------TGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT
s HiC_scaffold_1 128273895 1808 + 233722169 cacacatctaCACAAACACACATCTGACATCCATAAAAGAAGACTTTGATTTCTAGTCATGCCATATTCACCTGCGTGGATTTCCAGTTGTACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCACGTGTATTCACCACTGTCACTGAAAGTTGCTGCAGTGATGGTGTGTCTGGCAGTTGAGGTCTGAATGGTTCTGCCATTGAGGAGCCACTGTACGGAGCTGTGCCCAGGCAGCTGGGGTCCCTCACAGCACAAGGCTACATTTTCTTCTCGGAAAACATTGACCCACGGAGGCTGCAGGATGATCACTGCCTTTGTGAAGTCTGCTTgtgtataaaacagaaataaaagcaag-aaacaaataaTTAAC--------------ACGTG---GAGTGAAAGGAAGGCTCTGAGTGATTAGTAAAGTTTCAtggaaaacacaaggaaaaaatgCACTT--agattaatttgaaaaaataggCAAGTGACAATTTA---------------CATCTTTAAGAGCATGTAAGCTCCATTTCAGAGAGCTTTGTTTATGCTATCAAATCTTAATCTCAGGGCTGAGACTATTGGGTTCTTAAGG--AGGAACATT-GGGTTGCTGACATGGTTCTCCCTGTTGGTAAGGTATCAGCAGCATATTAGGATGGGACAACTGACTGGAACCAGTTTCCTTGTCCTTGATGCTGTGTTATCTCTA----------AGGGTAAAACATAGACCCTCAGAGGCTTTTGCATCAGAAAT---GCCTC---CCTTTGAAGATATCACTATGACGTTCTGGCTTTCTCTGCAGAGAAAAAACCAATGTGGCTCTCCTGCAGAGGGCACTAGTCTAGGGGGTGTTGGAA---AACCCAGCAGAGCTACTTCTGCATTTCTGCAGGTGTG------GCTAATCTC----------TGTT-------------GTTGT--------------------------------------------------------------ATATACAGA---------------------------------------------------------------------------------------------------------------------------------------------GTTGAGTTGAGCAGTCAGGAGTGATTCAGAAAACCTTAGATAACTtatcaaaacttaaaaatcagGATTCTATAAAAGCCAGACTCTGAATGTGGGAGGATTCTACATAATTTCCAAGTCTTTCTCATATCTATCCTCTCCCTAAACCGTCTTCCTGAGGTCCCTGGCACTCATTCTTTGGGAGTAGAAAAGT---GGTATAAGTGA--AGTTGGGCTGGAGGTCACTCACCCACTTGTCCACCAACTGGAACTGCAAGAGaccagaaaatagaaacatcAGT-TTGTCAgtaggaaataatgacaaaaggCAAGTTGGGAATAGAGAATGATGTAGACTCAGAAGGATACCTTAGGACTCTTGAGATTCTCTATCCCTTTTTCTCAAAAGCAAGTATCAGCTGAACTGATGGGCATTGATTTACTTTTTTCACTAGGGAAAAGCCCAGGGACTGGAACATTCtaaacaagtgctctaccaccatAGCTGCACCCTACCCACAATTAGGCTTTATTTTAATATGAGATTTTCAGATGTGATGTTAACTCTGGATTCccctttacatttttttaaatgtagtaggcaacaacaacaaaaaatataccATCAAAGCCCAGATACAGTTGCCTCCATGCTCATGATTTCTATTATAatatatcaaagaaaaacaaacaaacaaaaaatcttaatTCCTCATTGGTGAAGCTTGTCTCCTTCTAACCA-CTTTCCTGAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATCTTCCCTCC-AAGCTGGTGAAAGCAGTAAAAACTGTAGTGTGAAAG--------AGGTTCTGATGAGGCCCCACGGCAATGattagaaaagaggaaggaagttgATTCTTTTGACCACATTCATCATG-------TATCTTTCCTGGGAAATATGCCCTTAATTTT

a score=26215
s chr3            96292238 1856 + 160039680 CATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCATTAAC-----TGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACAAAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAACCCAGGAAGCTAGCCGCCCCGCCTTTC--GGTACCCAGACTGTCCT---GGGAGCTTT-TCTAGGTTGTTTGATTTGGATCCAGATGGTAGG---GTTTGGTTGCCAGTGACAGAAGCACCAGAGTTAATGAAGTGGGTCTC--------AAACG-----ACAGCA-------------AACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAAC----ACTTCCATCCACTTCTCCATTGGAAACTGAGACTCAGGCCCTTGAA-----------GCCTTCCTAGCTC---CTGAGGAG-AAAAACTTGTCT-GCTTTCTTATGAAAGGGACAGATTTGGGGGCACTGAGAATCCAGCCCAATAGGGCTACCTCTGGTTTTCTAAAATTCTGTGCTTTTCTAATCTCACTAGGCcagcgtttctcaacctgtgagttgcaaacccctggggggggggggatgtcaaatgacctctcacaggggtcacctaagaccatcagaatatacagacatttacattataattcataacagtagcaaaattacagttatgaggcagcaaatagcattatggttgggggtcaccacagcatgaggaactgcgtcagtgaggtcctggcgttgggaaggttgagaaccactgTGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGAC----AGGAACCTGAAAAACCA--CTTTTGCCGAAAATCCACTCTAAATACAGAGAGT-------CTAACTGAGAAATCCTCCTCTGGCTTGTCTT-CCTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAACCATTTGAAAGCAGGAA--AGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAG-ACAGAGATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAG-GTCCCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT------------------------------------------------GATGCTCT--------------------------------CTTTATTCTGATGGAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAAAT--TAAGC-----AACAATAAACTATTGGATCGTTGATG-AACAGCCTTTAAACTA--GAGTTCTAGGCTAACGTGACA-----------------AAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAG-------AATCATGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT
s HiC_scaffold_1 128494252 1734 + 233722169 CATGCCATATTCACCTCCATGGATTTCCAGTTGTACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCACATGTATTCACCACTGTCACTGAAACTTGCTGCAGTGATGTTGTGTCTGGGAGTTGAGGTCTGAATGGTTGCTCCATTGAGGAACCACTGCACGGAGCTGTGCCCAGGGAACTGGGGTCCCTCACATCTCAGGGCTACATTTTCTTCTCGGAACATATTGACATATGGAGGCTGCAAGATGATCACTGCCTTTGTGAAGTTTGCTTGggtataaaacagaaataaaagcaag-----aaacaaataaTCAACAA-----GTG------------GAGTGAAAGGAAGGCTCTGAGTGATTAGTAAAGTTTcatggaaaacac-aaagaaaaatgcatttttagattAATTTGAAAACATAGGCAAATTAGAATTCA---------------CGTCTTTAAGAGCATCTAAGCCCCACTTCAGAAAGCTCTGTTTATGTTATCAAATCTTAATCTGGGTGTTGGGACTATTGGGTTCTTAAGG--AGAAACATT-GGGTTGCTGACATGGTTCTCCCTGTTGGAAAGGTGTAAGCAGCATTTAAGACAGGACAACTGACT-GGGCCAGTTTCCTTGTCCTTGATGCTGTGTTATCTCTA----------AGGGTAAAACATAGACCCTCAGAGGCTTTTGCATCAGAAAT---GCCTC---CCTTTGAAGATATCACTATGACGTCCTGGCTCTCTCTGCAGAGAAAAAACCAATGTGGCTCTCCTGCAGAGGAGACTAGTCTAGGGGGTGTTGGAA---AACCCAGCAGAGCTACTTCTACATTTCTGCAG------GTTTGGCTCATCCCTGTAG--------TTCT-----------------------------------------------------------------------------ATATACA--------------------------------------------------------------------------------------------------------------------------------------------------GAGTTGATCAGTCTGGAGTCATTCAGAAAAGCTTAGATaacaagaaaacttaaaaatcaggATTCTGTAAAAACCAGACTCTGAATGT-GGGAGTATTCTACATAATTTCCAAGTCTTTCTCATATCTATCCTGTCCCTAAACCCTCTTCTTGAGGTCAATGGTGCTCATTCTTTGGGAGTAGAAAGCGGTATAAGTGAACTTGGGCTG--------GAGGTCACTCACCCACTTGCCCACCAACTGGAACTGCAAGAAACCAGAGAATAGAAACATCAGT-TTGTCAgtaggaaataatgacaaaaggCAAGTTGGGAATAGAGAATGATGTAGACTCAGAAGGATACCTTAGGTCTCTTGAGATTCTCTATCCCTCTTTCTCAAAAGCAAGTATCAGCTGAACTGATGGGCAttgatttacttttttccctAGGGAAAAACCCAGGGACTGGCACATTCcaaacaagtgctctaccaccatAGATGCACCCTACCCACAATTAGGCTTTAGTTAATATGAGATTTTCAGATGTGGTGCTAACTCTGGATTCCcctttacattattttaatgtaGTAAGCACTGAAAAAATATACCATCAAAGCCCAGATACAGTTGTCTCCATGCTCATGATTCCTATTATAatatatcaaagaaaaacaaacaaacaaaaaccttaatTCCTCATTGGTGAAGCTTGTCTTCTTCTAACCA-CTTTGCTGAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATCTTCCCTCC-AAGCTGGTGAGAGCAATAAAACCTGTAGTGTGAAAG--------AGGTTGTGATGAGGCCCCAGGGCAATGattagaaaagaggaaggaagttgCCTCTTTTGACCACATTCATCATG-------TGTCTTTCCTGGGAAATATGCGCCTAATTTT

a score=27981
s chr3            96292238 1880 + 160039680 CATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCAT-TAACTGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACAAAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAACCCAGGAAGCTAGCCGCCCCGCCTTT--CGGTACCCAGACTGTCCT---GGGAGCTTT-TCTAGGTTGTTTGATTTGGATCCAGATGGTAGGGT--TTGGTTGCCAGTGACAGAAGCACCAGAGTTAATGAAGTGGGTCTCA-------AACG------ACAGCA-------------AACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAAC----ACTTCCATCCACTTCTCCATTGGAAACTGAGACTCAGGCCCTTGAAGCC-----------TTCCTAGCTC---CTGAGGAGAAAAACTTGTCT--GCTTTCTTATGAAAGGGACAGATTTGGGGGCACTGAGAATCCAGCCCAATAGGGCTACCTCTGGTTTTCTAAAATTCTGTGCTTTTCTAATCTCACTAGGCcagcgtttctcaacctgtgagttgcaaacccctggggggggggggatgtcaaatgacctctcacaggggtcacctaagaccatcagaatatacagacatttacattataattcataacagtagcaaaattacagttatgaggcagcaaatagcattatggttgggggtcaccacagcatgaggaactgcgtcagtgaggtcctggcgttgggaaggttgagaaccactgTGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGAC----AGGAACCTGAAAAACCA--CTTTTGCCGAAAATCCACTCTAAA-----TACAGAGAGTCTAACTGAGAAATCCTCCTCTGGCTTGTCTT-CCTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAACCATTTGAAAGCAGGAA---AGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAG-ACAGAGATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAGGTC-CCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT------------------------------------------------GATGCTCT--------------------------------CTTTATTCTGATG-GAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAAAT--TAAGCAAC-----AATAAACTATTGGATCGTTGATG-AACAGCCTTTAAACTA--GAGTTCT----------AGGCTAAC--GTGACAAAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAG-------AATCATGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT---------TTCCCCTCTGTTgacaggtctcct
s HiC_scaffold_1 128307799 1761 + 233722169 CATGCCATATTCACCTGCGTGGATTTCCAGTTGCACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCACGTGTATTCACCACTGTCACTGAAACTTGCTGCAGTGATGCTGTGTCTGGGAGTTGAGATCTGAATGGTTGCTCCATTGAGGAGCCACTGTACCGAGCTGTGCCCAGGCAGCTGGGGTCCCTCACATCTCAAGGCTACATTTTCTTCTCGGAACATATTGAAATACGGAGGCTGCAAGATGATCACTGCCTTTGTGAAGTCTGCTTgtgtataaaacagaaataaaaacaag-aaacaaataatcAACAA-----GTG------------GAGTGAAAGGAAGGCTCTGAGTGATTAGTAAAGTTTcatggaaaacac-aaagaaaaatgcatttttagattAATTTGAAAAGATAGACAAATTAGAATTTA---------------CATCTTTAAAAGCATCTAAGCCCTACTTCAGAAAGCTCTGTTTATGTTATCAAATCTTAATCTGGGTGTTGGGACTATTGGGTTCTTGAGG-AGGAACATTGGA-TTACTGACATGATTCTCACTGTTGGAAAGGTGTAAGCAGCATTTAAGATAGGACAACTGACTT-GGCCAGTTTCCTTGTCCTTGATGCTGTGTTATCTCTA----------AGGGTAAAACATAGACCCTCAGAGGCTTTTGCATTAGAAAT---GCCTCG---CTTTGAAGATATCACTATGTGGTCCTGGCTCTCTCTGCAAAGAAAAAACCAGCTTGGCTCTCTTGCAGAGGGCACTAGTCTAGGGGGTGTTGGAA---AACCCAGCAGAGCTACTTCTGCATTTCT-----------------------------GCAGATGTGACTCATCCCTGTTGTTGT--------------------------------------------------------------ATATACAGA---------------------------------------------------------------------------------------------------------------------------------------------GTTGAGTTGAGCAGTCAGGACTTATTCAGAAAACCTTAGATaacaagaaaacttaaaaataaggaTTTTGTAAAAATCACACTCTGAGGATTTTACA-------TAATTTCCAAGTCTTTCTCATATCTATCCTGTCCCCAAACCCTCTTCTTGAGGTAAATGGTGCTCATTCTTTGGGAGTAGAAAGGCAGTACAAGTGAAGTTGGGCTG--------GAGGTCACTCACCTACTTGCCCACCAACTGGAACTGCAAGAGACCAGAGAATAGAAACATCAGT-TTGTCAGcaggaaataatgacaaaaggCAAGTTGGGAATAGAAATTGATGTAAACACAGAAGGGTACCTTAGGTCTCTTGAGATTCTCTATCCTTCTTTCTCAAAAGCAAGTATCAGCTGAACTGATGGGCATTGATTTACCTTTTTTCCCAGGGAAAAGCTCAGGGACTGGCACATTCcaaacaagtgctctaccaccatAGCTGCACCCTACCCACAATTAGGCTTTATTTTAATATGAGATTTTCAGATGTGATGCTAACTCTGGATTCCCCTTTACATTCTTTTAATGTAGTAAGCACCCAAAAAATGAACCATCAAAGCCCAGATACAGTTGCGTCCATGCTCATGACTTCTATtatatcaaaggaaaacaaacaaacaaaaatcttaatTCCTCATTGGTGAAGCTTGTCTTCTTCTAACCA-CTTCCCTAAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATCTTCCCTCC-AAGCTGGTGAGAGCAGTAAAACCTGTAGTGTGAAAG--------AGGTTGTGATGAGGCCCCAGGGCAATGattagaaaagaggaaggaagttgCTTCTTTTGACCACATTCATCATG-------TATCTTTACTGGAAAATATGCGCCTAATTTTCAAAgcatgtttttttctgttctcataTTCCCT

a score=12520
s chr3            96293509 585 + 160039680 GTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAGACAGAG-ATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAGGTC-CCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT------------------------------------------------GATGCTCT--------------------------------CTTTATTCTGATG-GAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAAAT--TAAGCAAC-----AATAAACTATTGGATCGTTGATG-AACAGCCTTTAAACTA--GAGTTCTAGGCTAACGTGACA-----------------AAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAA------GAATCATGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT
s HiC_scaffold_1 128278268 694 + 233722169 GTCACTCACCCACTTACACACCAACTGGAACTGCAAGAGACCAGAGAATAGGAACATTAGT-TTGTCAGtaggaaataataacaaaaggCAAGTTAGGAATAGAGATTGATGTAGACTCAGAAGGATATCTTAGGTCTCTTGAGATTCTCTATCCCTCTTTCTCAAAAGCAAGTATCAGCTGAACAGATGGGCAttgatttacttttttccctAGGGAAAAACCCAGGGACTGGAACATTCcaaacaagtgctctaccaccatAGCTGCACCCTACCCACAATTAGGCTTTATTTTAATATGAGATTTTCAGATGTGGTACTGACTCTGGATTCCTCTTTACATTCTTTTAATGTAGTAAGCACCCAAAAAATGAACCATCAAAGCCCAGATACAGTTGCCTCCATGCTCATGATTTCTATTATAAtatatcaaaggaaaacaaacaaacaaaaatcttaacTCCTCATTGGTGAAGCTTGTCTCCTTCTAACCA-CTTCCCTGAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATGTTCCCTCC-AAGCTGGTGAAAGCATAAAACCTGTAGTGTAAAAG--------AGGTTGTGATGAGACCCCAGGGCAATGattagaaaagaggaaggaagttgATTCTTTTGACCACATTCATCATG-------TATCTTTCCTAGGAAATATGTCCCTAATTTT

a score=11532
s chr3            96412913 484 + 160039680 tgaacctgctccaGATTGCCATCCAGTTTCACACGGATGGATCCTCTTTCCCACAATTTCACTT------------------GAGAAGACAT---GCACTGCTGTCAGGGTGCAGCTTCTAGGGTGCTTTTGCTTATTTTTCGTACAGCTTTTCCTGGTTGGCTTGGACAGAATCCTCCTCTGAGCAATGAAGACCACGTGCTTCCCGCTGAACTTTTTCTCCAATTCACAAACTAGCCAGACTTGGATTTTCTGGAAAGATTTAAGCTGAGGAACTGGTACAAAAATTATAACAGCCTTCTAACCACCACCAACTTCAATTTCCTTGGCTTCGGTGATGTTGAGTTCCCACAGCTGTGCCTTGAGATCCGTGGTCATCTCCAGCTCGAGCAGCGGCTGAGAGATGCCAGGCTCGAACTCGTCAG---GCTTGACGTTGGGTTTCAGAATCTTGGCAAGCTGGAGCTGAACATGGCTTCGTCCCTTGTAAGGAGTGCCGGCTTAGAAA
s HiC_scaffold_1 167561895 450 + 233722169 TAAGCCTGCT-------GCCATCCGGTTTCA----AGTAGATTCTTTTGCTCACAGTTTCACTCCGATAGATCAAGTTACTGAAGATGGCATTGTGTATGGATTTTGAAGTGTGGCTCCTagaacactttt-ctttctttgcatacAGCATTTTTGAGTTGGTTCGGGCAGA---CTTCTCTAAGGAATAAAGATTATATGCTTCCCATTTGACTTTTTCTCCAGCTCATGTGCTATTTGGATTTAGATTTTCTGGTAAGATTTCGGCAGAGGATCCGTAACACAGA--ATGACCGCTTTAGCACCAATAACAA-TGCAATTTCCTTGGAGGCTGTGATGTTCAACT------------CCTTG---TTCAAGTTCACCTGCAGCTCCCAAAGTGCCTGCAAAATGCTGAATTTGAACTCATTCATCCACCTGTGCTTTGGT----------------GCTGAAGCCAATCATGACCTTGTT---------GAGCACCAGTTTAGAAA

a score=9680
s chr3           96442267 304 + 160039680 CTTACAATTTTATTGTTTTTG---TGAAAAATCAACTTAGAACCTGGTCACTTGGCCCTTTCTCTTCTTGTCACCTCCCAGTTCAAGCTGCTTGTATCTCTTAACACAGTGTGCCAGGGTTCTCTTAGATCTACAGTGGGGTT--------------CTGAACGCGATCTTCTTTGTA-----AGCCtt---------------tttttttttttttttaaatatGCTTTGTTCCCTGTCACAAGGACACT------------------AATCCTTGCCCTTCCTGTGCT--GTCACTGCGTGGAGCTGGTGCCTGCC-CAGTTCTTGCAGACAGCTGGGTGAGTTTTAGGAAAGTTCAGCA
s HiC_scaffold_1 30501825 356 + 233722169 CCCACAGCTTCAACACTTTTGCCTTAAACACAAAGTTTAGAACTGGATCACTTGGCCCTTCCTCTTCTTGTCTCCTCCTAGTTCAAAATGCTTGCATCTCTTAATG------GCCAGCATCCTCTTCGATCTGCAGTTAGGTTCCACACACTCCAGCCTGAGCACAATCTTCTTGGTCGTTTTAGCCTTCTTCCGGAAAATAGGTTTCGTTTGCCCTCCGTAGCCACTTTGCTTCCGATCGTAGCGCCTCTTTCCTTGGGCATACAGGGAATCCTTGCCCTTCTTGTACTGGGTCACTTTGTGAGGCTGATGCTTGCCGCACTTCTTACAGAAAGTCCTTCGGGTTTTAGGTACGTTGACCA

a score=7964
s chr3            96574398 155 + 160039680 AGGACAAAGGTTGGAGTGACCACTGGGGATCAGTTGTGCTGTCTCAAAGACAAAA-TGTCATACAAATCAAGTCAGATGTGAACTCTGCCCTGCCTGGACTCCTGCTTTTACTGGCAGGTGACCTTGTTGGACCAAGCAAACGTCTGGAGTCCCGG
s HiC_scaffold_1 127642542 156 + 233722169 aGGACGGAGGTTGGCATGACCACTTGGGATCAGTTGTACTGcctcaaagacaaaaacatcATAAAGATCCAACCATTCTTGGATTCTGCCCTGTCTGGCTGCCTGCCTTTCCTGGCAGGTGACATTTCTGGACAAAGCCAGAGACACGAGACCCAG

a score=17494
s chr3           96666499 503 + 160039680 TTAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGA--CTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATG-TTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGA
s HiC_scaffold_1 32421026 435 + 233722169 TTATTCCTTGAATTCATAGGGAGT------------CTCCAGCTCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTGGGC--TGCAGGctggcatttc-----------------tttctttttgtcatcttttttctTG---------------ATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGA-TCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGGA---CATCTCTGGCATTC--TTATGGACAGTACCCACTCCCTTG---TCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCT--CAggt--------tttttccc------tttctcatttcTGCAAATTAGTAGAAGA

a score=4261
s chr3           96666499 68 + 160039680 TTAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGT
s HiC_scaffold_1 77422670 68 + 233722169 ttaTGCCATGAGCTCATAGGGAACAGGCTCCAACAACTTAGGCTCCTTCCCTTTGGTGCTCACAAAGT

a score=30566
s chr3           96666499 526 + 160039680 TTAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCT-CTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTT-GCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGGCTGCGGCGGCCGAAAGCCAA
s HiC_scaffold_1 80725745 525 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATAT--AGTAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCCAA-GAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAAGTTAA

a score=31732
s chr3            96666499 544 + 160039680 TTAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCG----GTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGGCTGCGGCGGCCGAAAGCCA----AAAATATT-----TTGTTATAGAA
s HiC_scaffold_1 178274457 557 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaagcaagaacaaaatattaaaaactgttagagaa

a score=31620
s chr3           96666500 573 + 160039680 TAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACC-CTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGGCTGCGGCGGCCGAAAGCCAA-------AAATATTTTGTTATAGAATAATCTATTGTTCCATGTGCTGTGAGGACT
s HiC_scaffold_1 16174762 571 + 233722169 taTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCT--GAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGACTGAAAGTCTAGTCTTTcaaatcttatattattttaaaatttgtttaccCACGAGATACAAGGCCT

a score=13529
s chr3           96666691 346 + 160039680 CTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGGC----TGCGGCGGCCGAAAGCCAAAAATATTTTGTT
s HiC_scaffold_1 99840708 341 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCA-------AACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTAC--AAAGATGACAGTTTTTGACAAAAGGAAGCTCGTGacattctgtt

a score=4818
s chr3           96729714 107 + 160039680 TGTTTAAGGATGGGGACAAGTTCTGAGAAATACA-GTTAGGTGATTTTCATCCTTGTGCAGCCTTTGCAGAATCTACTTAGATAAACTAAAATGGATGCAGTGTCACT
s HiC_scaffold_1  1318211 108 + 233722169 TGTATAGTGACAGGGACATGATCTAAGAGATGTGTGCTAGGTGATTTTTGTCATTGTGCAAACATTGCAGTGTGTACATACATAAACTAAAACAGTTACAATGCCACT

a score=6021
s chr3            96811019 231 + 160039680 TAGCTAGATACATAAATACTTGCTGTTGTGTTACAGTTGCCTGCAGTATTTAATATGGTAACATGCTGTACAGCTGT--------------GTAAGTGGTACCATATGGCCAAGGTATGCAGAGCCTATGCCGTCTGAGTTTGTACACATACACTCTATGCTTTTAAGAACCTTCTGTAGGtttatatataaatt-atatacattttaaattatatatttataaatgtatatttaa--ataCATCTAG
s HiC_scaffold_1 123480291 237 + 233722169 TAATTTGATATACAAATACTTGCCATTGTGTTACAGTTGCCTACAGAATTCAGTAGAATAACATGCTGTTCACATTTCTAGCCTAGGAACCATAGGCAATACCCTATGGCCCATGTACAGTGGACAT---TCACCTAGGTTTGGATAAGTACACTCTATGAT--------ACTTGTATAGACACAACtgtttattgatatatttttcagaatatatCCCTGTCACTTGGCATTTGACTATATACCTAG

a score=25225
s chr3            96919640 721 + 160039680 CCCAGGTGGCTCATCTCCATGATGTTGAGGAAGAGTGACACAAAAGCGACTGATAACATGAAGAGGATGAAGATGGTCTTCTCAGTAGGCCGGGATACAAAGCAGTCTACCACATTGGGGCAGGGCCACCGGCTGCAGCGATAGAGGGGCAGGATGC---GGAAA---CCATACAGGAAGTAATGGCCCACGATGAAGCCCACCTCAAAGAGGGTCTTGAAGATGATGTGGCAGACATAGGTCCTTAGCAGTGTGCCCT----------------------------CCAGCCGGAACTTCTTGGTGCCTTTGCTACTGCTGCTGCTCTTCCGGATGCTGGCCTGGTCTGGGGCGATTGGTACCCTCTCACCCCCGTTGCTGCGCGACTGCTGACAGAGCTCCTCAGCTTCACGGTCCTTTCGCTTCTCCTCCATGCGAACGTGGTGTACCGCGTGCCCCACGTACATCAGCGATGGAGTGGAGACGAAGATGATCTGCAGCACCCAGAGGCGGATGTGTGAGATGGGAAAGGCCTCATCGTAGCAGACATTCTCACAGCCTGGCTGCTGGGTGTTGCATACAAAATCAGATTGCTCATCGCCCCACACAAACTCCGCTGCTGTCCCGAGGATGAGGATGCGGAAGATGAAGAGCACTGTGAGCCAGACTCTGCCGATGACAGTGGAGTGCTCATTCACCTCTTCCAAGATGTTTCCCAGGAAACTCCAGTCGCCCAT-TGCTCACTACCAAGGAA
s HiC_scaffold_1 127072012 710 + 233722169 CCCAGGTGAAAGAGTTCAGCCAGGCTGAGAAAGAGGGACAGTCCGGCCACAGCTAGCATAAAGACAATGAAGACATTCTTCTCTGTAGGCCGGGATACATAACAGTTGAC------GGGGTGGGGGCAAGGACTTCTGCGGCAGACGTGCAAGGTGTTCAGGAAGATTCCATAGAGGAAGTACTGGCCCACAATGAAAGCCACCTCCATGGCAGTGCGGATCAAGATGGTGCAGACATAAGTATTCAGGAGATTGCCCTGGAGGACAACCTTTCCATTCATTTCCTCCCAGCAGGATAGCTCTGGTTTCTCAGCCAC--CTGGAATTCATATGGA---------GACCCAGGACGGTGGAT-CTCTTTGGCTCTC----------------------------TCAGCTTCCCGTAGTTTCCGCTTCTCCTGCATGCGCACAGTGTGCATGGCGTGGCCCATGTACACCAGAGATGGTGTGGAAACGAATATGATCTGCAGCACCCAATAGCGAATGTGGGAAATGGGGAAGGCTTGATCGTAGCAGACATTCTCGCAACCGGGCTGCATGGTATCGCACTGAAAATCAGCCTGCTCATCACCCCAGGAAGACTCGGCGGCAGTGCCCAACACTAGCATGCGAAATATGAACAGTATAGTGAGCCAGACCTTGCCAATGACGGTGGAGTGCTTGTGTACTTCCTCCAGGAACGCTCCCAGAAAGCTCCAGTCACTCATCTTGGCACAACCAGGGAA

a score=11358
s chr3            96989875 277 + 160039680 cGAAGCTCAACATTGTG-GCTACAGCTAGATTTTCTTTTTTTAAAAAGCTGTTTGTGGTTGCTTAACATCTTGGGAAGTAAATAGCTGGAAATCTT-----------------TTATTTTTCCCT----GAGGAATGTGGGAGGATTTCATTACTTCCTGGGTACTACATGGAAAAACTACATAGTATAAAAGGTTTTTAGTTCCCAGGACCTTT--GGAGCTCACCCAATCACTCAATACCCA----TTGATCAACATAATCTCAGAAGGTAGGAGCTACTCCTGCTGTTCTTGCAAAGGGAGG
s HiC_scaffold_1 127155167 305 + 233722169 CAAAGCTCAACATTATTCTCTAcaccttaaaatttcttttttaaaaacttacatatgATTGCTTAATGTCCTGGGAACTAAATAACTAGAAatcttgattatatattttttctttatcttttcccttCAGGGTGATGTGGGAGGATTTCTTGACTTCCTCAATACCTCATGGAAAAACTGCATGATATAAAAGGGTTTTAGATTTTTGGGACTTCCGGGGGCTCACTCAACCACACGGTACCCATCTGTTGatctaaataaatttaaagagtACTAACTACTACTGCCATGCATGCAAGGCAGGG

a score=29089
s chr3            97014428 1250 + 160039680 AAAGCACCTGGGACTCTAGCTACTGTGCCTTCTTGATAAATTGTTCCTTTATGATCAGTTTG-GTTTACTGGTTTCCCAATAGAGAATCTCCTGCTCCTGTCTTGGAAAACATTGAGTGACTCCAAAGATGGAAGTACGTGTTGC-CCAGATGGAGATATGAGTTCAGGGGAGGGGGACAGAACACTTCCCATTCTCCATAAAAGTAAAGTTCTAGGGAAAAAAAAT------TGTACAATAATAGCCTAGATGGGATAAAAGCAAACCAAGGT---------------GAGCTAATTACAACCCAAAGCAAGAGGGAAATCAACTAAAAAATGAAGAGCAAGTCCCACACTGAGCAAAGCCCAGAAGCAATTCCTTGAGGTCATGATATCCAAACTCTGTCTTGCAGGATAAAAGATCCTTGCTAGATGAG----------AATTTGATCAGGGTAAAATGGAGGGGTCATTCCAGACCCTGGG--------------------------AACATATGAGGCATTCTGGGAGTGGAGGAATTCAAAA-----CCACCCACCTGTTCCATCTGCCCTTGGCGG-ACTCCCTGATTGCT-CTGTTGGTATTTTGTATCAATGGTGGATCAGAGAGAAGTCTTcatttgttcaatgcacactaagtgac-aggtgctttacaaatgtctcacttactctttctcccaatagttagaggtgaatattgttatttccacttcttctagaacaagaagttgagaccttgaaatt--------ttcagacagg-ctacagagccttcaggatatcatcagaagccagga--------tcccaactgcctgcccagagccctgctTATGCCTTCTTCAGAGACTTCAAAGAGATGTTCTAAGAGCTCTAC-------AAAAAGGAATTCTTACAATTATATTTTAGGAAGAATGTTTTTCCAGAGATTCATTTCTGGCATTCCATTCCTCAGACTGTCGGGCTCCGGGATGCCTTCCCGTTCCTCACCTGCTC-ATTGTCTATTGAAGGCCTTCATCTGTTGGCAGTGCCTTTTTCTGACCTCTTAGGCAGTAGCAAGATTTCTGCTGCCCTGTGGACTCTGCTGATCACTCCCCAACAGGGGCTGTTTTAGGCACCCAACACTGAAAGGGGCT----CTGTTTGCT----------------GGGTTTGTAGGAGCTAACTGACAAGTACCCAGCATGTAATAAGCACTTGCTTGTGTGCCT-GTACAGGGCTTAACACCTCACGTCATCTATTTTATCTGCTTGACTCTCTATTACATGTCAATAGGCATTGTTAAAA--CTACAGACAAGGACACCtgtagtgagaatt
s HiC_scaffold_1 127122089 1267 + 233722169 AAAGTATTATGAACCCTCGCCACTCTATCTATTGGGTGGGCTGGTCTCGTATGCCCAGTCCGTGTTCCCAAATTTCCCCACTGGA----TTATGCCTTCCTCTTACAGAATACTGAGTGAGGGCACTGAGA--------TGTTACACCAGATGAAAACGTAAGCTCAGGGGA------CAGAATGCTCCCCATTCCTC-------TACAGGACTtgtaaaaagaaatgcaagatGTAGAA----AGGTTGGGTAGCACTAAAGGGAAT-AAGATATTCTCTACCTTTAAGAACTAATTACAAACCAAAGCAGG--GGAAATCAGTGTAAAATTGAAGAACAAGTCCAAGCTGTGGGAATTCCTGGAAATAATTCTTCGAGGTGGTGACAGTTAAGCCTGATCTTGAAGGTACAAGAAT--TTCCTAGATATGGTATAGACCAAGGTAGAACAGGGTAGGGTAGAGAGGTCAATCCAGACTGTGAGGCTGGATAAAGATATGGATTCACTAGAAAAAATGAGTTATTCTGAgaatcattaaattaaaaaagcatccatttacctgttcTTCCGGTCATTGGGGACATTTCCTGTTTGATGCTTTTGGTGCTGTGTA---AGGATGGAT---GGAGAAG--------------AGGCACATACTATAACTAGGTACTTTACAgacatctcatttaatcttcactgcAATGATT-GAGGAGAATATCATTATCCTGACTTTTTCCAGG----GAAGTTGAAATCCTGAAAGTACAAATGTCTCACCCAAGACCACAAA-CCTAGTTGATGTTAGCAGGAGCCTGCACACTGAACTCCTGATTACTAGCCCAGAGCCCTGTTTTCTGCCTCCTCAGAGACTTCAAAGGGATTTTCTGAGagcagcaccagaaaaaaaaaatagttcttgcAGTCATATTTTAGGAAGAATGTTTGCTCAGAGCCTCATTTCTGTCATTCCATTCCCCAGACTCTCAGGCTCCCAGATGCTCTCCC------CACCTGCTCTCCTGTCTATTGAA-CCCTTCATCTGTTGTCAGTGCCCTTTCCTGGCCGCCTGTCCAGCACTGAGCTCTCTGCTGTCCTGGAGTCTTTGCT---------------GGGCTCATTCCAGGCACCAATCAT------GGGTTGCTCCTGCTTGCTTGCCCCAAGACCACACTGGCTTGTAGAAGCTAACAGATAGTGGTCTAGCAGCCAA----CATTTGC-TGTGTGCCCAGCACTTTGCTTAACTTCTCTCACACATTATTTTATCCTTTCGACACTCC-TCTCAT----ACAGACATCATTCAAATCTTAGAGATAGAGACACTAGGACTCAGAGTT

a score=14305
s chr3            97016714 585 + 160039680 GAAAGCTTGAGTGGAGAATTCTTGTCTAAGAAGTCCCCTTCAGAAGAC----------------------CAAGCCAGGAGAGATCATCCACGGACCCCATCTCTTTAGCATCC---------CTTCATCCACACCAACATGT--CCTGAATCCCTCC----CCTTTGGATGTTAGATTGAG--------------TGTTACC------TGTGGTCTTGAATTCCAGCTGGGTGTCTAGACAGTGTAGGTGAGTCGGGGCAGGTGCTTCCAACTCTGTTTTGGTTT--CTTCTCTCACtatcagccttgtagggttgcttcgagaagaaaaattcatgcacaca--gcactta-aacagtgcctggtggagaatacacatgccgtaaatatcagtga-------tttttATTGTCACTCCTTCCCAGGGCTGGGCCAAGGGAATGTTCTTACCCCTGGAACTTGGGTCTTGAGCAGAGTGCCAAGAAGACAGGAGTCCATCTGAGCTGACTTATTTG---------GCTCTGAAGAAATGGTCCACTGGTTTCTGTTCCCTTA--TCCAAGGCAATCCTTTGTCCTGGTTCTTCCTGAGTCTGGAACTTTGGCTATATTTTAAAACCTGTACCCCACCTTTCACAAACTTCCCCACCTTCTTCCt
s HiC_scaffold_1 127123971 656 + 233722169 GAAAAATTGAGTGTGGAATTCTTGGGTCA-AAGTCGTCCTCCAAGGCCTCTCTTTACCCTCTGGCTctcccaagtcctgatggattttCAGTGGGTTTTACTTCTT-AGGGTCCGTTCTCTTGCTTCATTCACTCCAAAATTTTGCCTTGGTTCTTCCATTCTCTTTTGATATTAAATCAAGCCTGGATAGTCTTGTGCTACCATACTTCCTCACTTTGAATTTCAACTCTGCTACTAGACCATTCAT-TGAGCTTGGACAGTTCACTCAAACTGTATCATATTTTGAATTCTTACTCCATCTGCCTCACAGGGTTACtgcaagaagaaaa-tacatgcatacatgGTGTTTAGAACAatgccttaaataaaataaa-acaccataAGTATtggtgtgcttttttttttaccgtCCATTTTTCTCAGA-CTAGGCCAAAGGAATGCTCTTATCC-TGGAATTTGAATCTTGAGCAGAATACCAAAAAGGCAGAAAGCCATTGCAGCTGATTTATTTGGGTAATTGTGCCCTGAAGAAA-GGTCAGTTAGTTCTTGTTCCTTGGATCCTAGGGCAGCTCTTGCTCCTGAAAC-TCTTGGATTTGGATCTTcagttatttcttttatcttgtgCCCCACTTCCAACAAATTTCCTCTCCCcttttct

a score=35292
s chr3            97020837 1474 + 160039680 AGCTTGAACACG-TCTGTATATACC-ACAGGGTGATAGTCAGGGTGGTTGGTTGACTCCACTCAAGTTTTCT-CCTCTGACAGCTGAGAGCAAGCTGACTGAAACATGGCTCTAGATGCTGCCTCATTTGTGTTCTCCT----CTGTGTATCCTCACTGACTTATCGCTGTGCTACCATCTGGAAT---AAAAGCAGCCTGAGAACCTCCACGGTGCTCCTCAGAGCAA-------------------------------GAGCAAATGCGACTGGGAACCTAAGATGAGCCTGGATTTTTTTTTCCCCAAGATTTGGTGGGGCATCGATAAACTTATCAACTTAGAATCACAAACACTGTTAGGATGGCAATG--AGCAGTAATTTAACTCAT---------TCTCCCTTTCACCAAGATGGAAACGAAAGGCCTAAGAGTGACTGT-------CAAGGGCATTG-ACTATGTGTCAA--TTAGACCCTGAGCCCTGGTCTGCCGAGCTC-------ATGCATGTCCTCCTGGCCTCGTATTGTCCCATTAACCATGGTCTCTTACATGTGGCCTGATCATCAAGGGAAGAGCTGGTGCTTTAACGCCAGGGTCATGTGGGAGCTTACAGAAGCCTGGATGGAACTGGAGGCCTGTGGCCTGGCGGTAGCTGTTCTGGGCTGCAGGCTCC-------ATGGCAACGTGGAGCTTTCCTGTTAGCTT---------CTTCAGAGTTCCAGTTTCTACCTCTGCCTGCCGTAGTCGCCCATCCCCAGATGCAAGGCATGCAGTTCTTTCCCAGGGTC---CAGGGCCTTGCTTATCTCTGC-AGAGCTTCACCTCTCACCCAGC----CCACTTCCTTTTGCATCTTGTATGTGTGATGGGGAAGGGGTTTGTTGAATGGGGGAAGCTAAT-TGTTTTGTTTTGTTTTGAATGGATTTGTTCAGAAGCTCTGCTTTTTTCCCACCAGCTGCTGGCAAGGCTTTGACAGGAGAGCTCAGA-TCCCATGAAGCAACTTACTTGGGGCAGAGAGAGAAAATGTTTTGTA-------------GTAGAAAGTAACAAGACACTGCTT---------------------------------------GTTTCCAAAATAGT--TTATTTTGCAAACTAAAAGCTGAAATGTTAAA-AAGGGCCATGGAATGAATTTTGTTAAATACATAGACATAAAACTATGTCGCCCAAGGGCCTATCAATGGATGGATGTGATATATCTCCTGTATTCATCTTC-----------------AGATGTGGGCTCTCGAGAATTCTAGTGCAGGGGTAACACCCCAGTAGATAGAATAGGCAAAAATGTGTTATGCTGTCTTTGGATGCTATGTCCTCTGTATATGCCCATGGTGATCATTAGGC-----AAAAGGGATGTCACTACTGACATAGAAAATGTCCCTGACAC-TTGTTGACCAAAAACAAAAGCAAAGAACAAA-GAAGTTCTCATGATACATTTCTAAATATGGAACAACCTGGTTATAAGGTTATAAGGTTACCCACCGGTGGAAGGTTATCTAGCGATATTTTTAACAGTGATGATGGGTGGCTTATTTCTATTATTTGGATTTTTCTGTT
s HiC_scaffold_1 127128580 1600 + 233722169 AGTTTTAACACACTCAGTGCATTCCTACGGTGTAATGGTCAGAGAGGTGAATAGAATCCACTTGGGTTTTCTGCTTCTGCAAGATGAAAGCATCTTAATTGAAATACATCTTCAAATGTTTTCTCTATTCTATTATTCCTATCCAGCATACCCTTGGGCTTTCAAAATCTTGCCACCagatggaatttaaaaaatggcctaa-aatattttttatgctaCTCAGAACACTTTATAGATAAAGGAAACAGGTGGAGGGTCTGAGCAAACATAATTGTGAGCTTCAGTTGAACTCCAACTTCT-----CCTAAGCTTTGGTTTGGTATGGAGATAACCAATTACCTAGACTCGGAGAGAGGCATAGTTTAGAATTGGAAGTCATAATCAAACTcttggactcaaatcttcctttTACCAAAATGGAAACTGAGGGCCAAAGAGTAACAGTGACTCCTCAAGGTCACTGGACTATGTGTTAGAGTTAGGACCTGCACTAAAGTCTCCTGAGCCCCTGATTAGTGAATTTCCTTCAAGACTCTCATTGCCTCCTCAGCCTTAGTCTCTTATGCAAGTTCTGG-CTCCACAGGCAGAGCTAGCACTTTAACCTCAGGGCTATGTGGGAGCTTGCAGAAACTTTGGTAggactggagccaagaagcataGTAACAGGTCTCCCAGG--AGAAGCCCGtttagtggtggtggtggtaagcTTGCAA---AGCTTGGTCTAGACATTCAGGATTTAAACTTCTACCTCTTTTATTCATAGAAACCCTCCCC----TGAGACTCATGAAGGGTTTTCCCATGGTTTGTCAAGGTCATTCTTATCTCCTCTAGTGTTTCACATCTCACCCAGCATACTTACTTCCTTTTGCATCT---GTGTGTGGTGGGGAAGGGGTTGGCTGAATGGGGGAGgctaatattttttgttttcttttgaattgttttgttcAGAAATTCTGCTTGTT-CTCACAGACTGTTGGTGAGGGTTTGAAAGGAGTACTCAAAATCCCACAGAATAACTTACTTGGGACacacagaaaaacattttagtaTCAAAATTACCATGTAGAAATTAAAAGGCCCCTACTTCAAAATAGTAACCAAATAGTACCAAATGGTAACCAAATAGTAACGAAAATAGTAACCAAATTATTAACCAAAAACTGAAATTCTCAATAAAGGCCACAAAATAAATTCTGATAAGTTCATAG-TAGGAAACTATGTAATCAAAGGACTAAGCAAAAGGTGGAGGTGATACATTCCCTGCATTAGTCTGCTCTAGAGGGTACCACACAGATGCTAGTTTTTGAGA-TTCTAGAGCAGTGGAAACATCTGTGTAGACAGAAAAGGCAAAAACACAATATACTACCACTGGGTGCCATTTCTACTGACTAAACTCCTGATAACCATTAAAAAGTTGAAGATGAGTATATCAATTGGCAGAGAAAATGTCCCTGAtgtatttttaactgaaaataaaaacagactacAAAGGAAATGTTCACAATGAAATTTCACTtctgtaaaaa-------agaaagataaaagtata-------ATAGATGGATATATA---------TTAATAGTTATAA---GTACATTTTATCTCCTGCTTAGATTTTTctgtt

a score=7350
s chr3           97042452 452 + 160039680 AGCCAAGTGTTAGCAATGC--TATGCTGCTATGAcaactcaagttaaaaaaacaat---------------cttattttggctcatgggttcagagatttcagttcatg----cttggctttgttgctaccagatctgt-gacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccaccagttggggaccaggccttcaatgaagcatgag-ctttggggg
s HiC_scaffold_1 25781670 398 + 233722169 AGGCATATGTTAGCA-TGCCTTCTACTGTTGTGACAAACTACTTGGGAAAACCAATTTAAAGTAGGgaagacttattttggctcatggtttcagaagtttcagttcatgatcaCTTAGTTCTGGTGTTTCTAGGCCTGTCGAGAAGCCAAAATGCTCATGGTGTCAGG-TGTGGGAGAGGAATTTTCCTCATCTCATAGCATCCAGAAAAG------------------------------------------------ATTGGCGGGGGGGCCTTCAAAGTCATAC--------------ACC---AGTTACCTACTTCCTCCAGCTGGGTCCTACCTCTGAATGGCACATTTAGCTATGAAGTCATCAATGAACTGATCC-TCAATGCAGCCACTTCACTAGGTCCCC----ACCTCTGAATAATGCAAC--ACTGAGGATTAAGCAATcagc---acatgagtctttggggg

a score=7343
s chr3           97042489 359 + 160039680 caagttaaaaaa--acaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagaggg---aagagaaata--agaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTAT-TTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatct
s HiC_scaffold_1  5170657 303 + 233722169 caatttaaagaaggacaGGCTTATTGTGGTTTAGGGTTTTAGAGGTTT-AGTCCATGCTTAGCTA----GCTCCAAGATC------------AAGACATGACAGTGGAAGAGCATtatagaggaaagctgcttaactCATGG----CTGGGAAGCAAAGTGGGTTGGAAAGAAATCCTAGAAGAAAGTG----------------CCAGGGACCAGA-------TATTGTC-------------------CTCAAGGTCACATCCCTTCCTCCAACCAGGCTCTATCTCCTAAAAGACCAGTCAGTTATGAACTCATTAATGGATTGATCCATTGATGAGGTC-ATGCCCTTAAAACCCAATTATCT

a score=5862
s chr3           97042493 370 + 160039680 ttaaaaaaacaat--cttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataagga-catgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGA-GTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccacc
s HiC_scaffold_1 58837010 313 + 233722169 TTAAAAGAGGAATGGTGTATTTTGACTGTCTGATTCGGACACT-CAGTCTATGAtaggct-----------ggatc-----caaggcagaaatagtaTAGTGGAAGGGGAATGGTGCAGGAAAACTGAGGAACTCATAA-AGCCATAAgtagagagaaagaaggga-----gaagtcAGGGACATGAATAAAT---------------------CCTTCCAATCAC-----------------CCCCCACTGATCCAGCTCCTCAAATCAGACTCTATTTCCTAACAATGTATTTAGCCAAGGACTCATTGATGGATTAATGAGTTGATGAGTATAACACCCTAATATCCCAACCACCTTCCAGAAGGCCCACC

a score=7807
s chr3           97042493 358 + 160039680 ttaaaaaaacaatc--ttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgtta------taaggacatgacagaggaaagctgctcaccttctggtagccagaga-tggagagagggaagagaaata--agaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctccc
s HiC_scaffold_1 25880997 299 + 233722169 ttaaaagaaaaaacatttcttttggcTCATAGGTTCAGAGATT-CTGTTCATGGTcagc------------agctc-----caaggcagaaacatcatggcaaatGGCCAAAGGCACATTAGAAGAAAACTGCTTA-------GCAGccacagagcagaaagaaagaaaaagaatcccaGAAAAGATGAACCCTTCAAAAGGCA--------------------------CACCCTCT-------------------TGATACACCTCCTCCAACTGGACTTCACTTTGTAACAGCTTATTCAGCTATGAAATTATAAATGGGTTAACCAATTGATGAGGCTAGTACCCTCACAAGTCAACAACTTCTC

a score=6218
s chr3            97042495 436 + 160039680 aaaaaaacaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccaccagttggggaccaggccttcaatgaagcatga-gctttgggggagaagacagttcattttcaaaTTCTGA
s HiC_scaffold_1 166456510 323 + 233722169 aaggaggaaatgtttctttggctcatgattttagagagttcagtccatgatgagct-----------ggctc-----caaggcagaaat---gtggCAGAAGAGTACGGTGGAGGAACACTAGTCAAttcctggcagccaggaaagG-GAGACAAAAGAGAAACT-------------------------------------------CTTGAAAGTCACATTCCTAGTG--------------------------TCCTACTTGTTCTGAACTTCTCAGAGTCTCCTCGGCTATGAACTCATAAGTGGGCTGATCCATTAATGAGGTTAGTGTCC---TGAtttagtcaccttccaaaaggctTAA------------------TTCCtaacacatgaggcttttggg----agatatttcatttttaaatcataa

a score=5378
s chr3           97042495 326 + 160039680 aaaaaaacaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAG----TGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAG
s HiC_scaffold_1 55865553 253 + 233722169 aagaggacaggtttattttggtttatgt-ttcAGAGAGTTTAGTCTATGGTCAGCT------------------------------GGCTTTAAGGTGAAATAAAATGGCAGAAGAAAACTGTTTATCACATGG--GACAAGGAAACAGTGAGCAAAGGGaga---------------------------agccagggacaagaatg----------caCACTTGTAGATCTTGCCTCCT-------GTGACCCATCTCTTTTAACCTGGCTACAACTCCTAACCGCACATTCAGCCATGAAGTCATCCATAGACTAATCTGCCAAGAAG

a score=6249
s chr3           97042499 364 + 160039680 aaacaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccacc
s HiC_scaffold_1 88453608 284 + 233722169 AATCACTCCTAATTTTACTCATGGTTTAGGAG---TCCGCCCATGGTTAGCTGTCC----------------ACAAGGCCGGAACATCATGTTTGATGGGTGTGCTAGAGGAAGACTGCTCAC-TCAGGgtagctag-gaagcagagagagaaggaaa----gagccgGGGGAG-------------------------ATACACCCCAGTGCCACACGT------------------------------CTTCCAACAAGGCTTCACCTCCTAACAACACACTTTGCTATAAACTCAGCAATGAACTGATCCAGTGATAAGCATAGCATATACATGATTCCATCACTTTACAAAAGCCCTGTC

a score=6080
s chr3            97042507 344 + 160039680 ttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctccc
s HiC_scaffold_1 165937536 279 + 233722169 ttgcttCGGCTTACGGTGTCAGAGGTTCCAGTATGCAGTCGGCTGACTC----------------CAAGGTAGATACATCGGGGTGGGAGAGAGTGGAGGAGGAAAGTTGTCTGCCTCATGGCagatgg-gaagcagagaggaaaga--------------------------------cCCCAGGAAAAGACA-----------CACCCTTTCAAAAAT-----CCCCCAGTAACCTATTTCCTCCAAATAGGCTCCAGTTCTTGGTAGCCCGTTCAGCTATTAGCGGATCAATGGAGTCATCTATAAATGAGGTCAGTACCCTCATAATTCAGTCATTTCTC

a score=4467
s chr3           97042519 313 + 160039680 atgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGG-ACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACcct
s HiC_scaffold_1 17248100 254 + 233722169 ATGGTTTTAGATGgatcagtccatggttgg-----ttggctccaaggctgcAACCAAATAGTGA------------AAGGCATAGCAGAAGCAAGCTGCTCAAACCATGGCAGCta-------agaagcagaaaacaaatt---------------------taGGAGCCAGAAATAAGAAAACACCTT----------TCCAAATCA-----GCCCTCAGTGACTCATACCCTCCAACCAGCTGCCACTTCCTAATAGCACATATGGTAAGAAGCTCATTGATGGATTAATCTGATGGTGAGTATAGCAACCT

a score=4099
s chr3            97042729 175 + 160039680 ATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccaccagttggggaccaggccttcaatgaagcatgagctttggggg
s HiC_scaffold_1 158683496 156 + 233722169 ACAACCATAGTGACCCACATCCTCCAACCAGGTTTCACCTCCCAGCATTGTATTTAGCTACAAACTGATCAATGGACTAATCCAGTAATGAATATCATACCTCCA-GATGCAATCACCACACAAAAGCTCCA----------------CCTATAATCA--CATAAGCTTTGGAGG

a score=5443
s chr3            97042737 126 + 160039680 AGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccacc
s HiC_scaffold_1 133690609 126 + 233722169 AGTGACCTATGTCCTCCATCCAGGTCCCACCTATTCATGGCATGTTCTGTCATGAACTTATTGATGTATTAATCCGCTGATGAGGTTAATGCCTCTGCAATATAATTATCTTCCACAAGCCACGCC

a score=26281
s chr3            97050598 734 + 160039680 GCTCGGCCTCGGTCTCCTACTCTTGG------CAAGATGGGTGACTGGAGCTTCCTGGGGGAGTTCCTGGAGGAGGTCCACAAGCACTCCACAGTCATCGGCAAGGTCTGGCTCACTGTCCTGTTCATTTTCCGCATGCTGGTCCTGGGCACCGCTGCTGAGTCCTCCTGGGGAGATGAGCAGGCCGACTTCCGGTGCGATACCATTCAGCCTGGTTGCCAAAATGTCTGCTATGACCAAGCCTTCCCCATCTCCCACATTCGTTATTGGGTACTGCAGATCATCTTTGTGTCCACGCCTTCTCTAGTGTACATGGGCCATGCCATGCACACTGTGCGCATGCAGGAAAAGCAGAAATTGCGGGATGCTGAGAAAGCTA----AAGAGGCCCACCGCACTGGTGCCTATGAGTACCCAGTAGCC---GAAAAGGCC-----------GAGCTGTCCTGCTGGAAAGAAGTAGATGGGAAGATTGTCCTCCAGGGCACCCTACTCAACACCTATGTCTGCACCATTCTGATCCGCACCACCATGGAGGTGGCCTTCATCGTAGGCCAGTACCTCCTCTATGGGATCTTCCTGGAT----ACCCTGCATGTCTGCCGCAGGAGTCCCTGTCCCCACCCAGTCAACTGTTATGTTTCGAGGCCCACGGAGAAGAATGTCTTCATTGTCTTTATGATGGCTGTGGCTGGACTGTCTCTGTTTCTCAGCCTGGCTGAACTCTACCACCTGGGCTGGAAGAAGATCCG
s HiC_scaffold_1 127242884 755 + 233722169 GCTCAGCTTTGTCTTCTCCTTCCTAGGTGGTGAACAATGGGTGACTGGAGTTTCCTCGGAAACATCTTGGAGGAGGTGAATGAGCACTCCACAGTTATTGGCAGAGTCTGGCTTACTGTGCTTTTCATCTTCCGGATTCTCATCCTTGGCACTGCTGCAGAGTTTGTGTGGGGGGATGAGCAGTCTGACTTCGTCTGCAACACTCAGCAGCCCGGCTGCGAAAATGTCTGCTACGACGAAGCCTTCCCCATCTCCCACATCCGCCTCTGGGTCCTGCAGATCATCTTTGTGTCCACTCCATCTCTGATGTACGTGGGACATGCTGTGCATTACGTGCGCATGGAGGAGAAGCGGAAGGACCGCGAGGCAGA-AGAGCTGTGTCAACAGTCCCGGAGCAACGGCTGTGAGAGGGGCACGCTGGCCCCGGATCAGGCCAGCATCAGGAagagtag--cagcagcagcaaaggcACCAAAAAGTTCCGGCTGGAAGGGACTCTGCTGAGGACCTACATCTGCCACATCATCTTCAAGACCCTTTTTGAGGTGGGCTTCATCGTGGGCCACTACTTCCTGTATGG----TTTCCGGATCCTGCCCCTCTATCGCTGCAGCCGGTGGCCCTGCCCCAACGTGGTAGATTGCTTTGTGTCCCGGCCCACTGAGAAAACCATCTTCATCTTGTTCATGTTGTCTGTGGCCTCTGTGTCCCTCTTCCTCAATATCATGGAGATGAGCCACCTGGGTCTGAAGGGGATCCG

a score=4717
s chr3            97373647 136 + 160039680 AATAAGGAGATGTCATTATGTGATGCACGAAGTCACTGAGAAGGAACAGGCATTAGAAAAAAGATAATGAATTACTTTGGGAACTTGCAGGTGCTGTGAGAAGTCCGTACGCAAGTGTTCATTTAGT-ACTAAAATT
s HiC_scaffold_1 126656491 136 + 233722169 AATAAGAAGATGTCTTTAACTGATGGCAAGAATTACTGAGAAAGAACAAGTATTGGAATGGAGGTAATAAATTCCTAATGAAACTTA-AAATACCCTGAGACATCCAGAAGGAAGCGCACAGCTAGCAACTGAAATT

a score=4055
s chr3            97374573 101 + 160039680 TGAAGACAGCAGTTTAATAATCCTTGGCATGAGGGTAGGAGCTGAAGCTATGGCTGCATGTTG---GTCACCAGAGAGGGTAG---------GAGGTAGGAGAAGGAAGCTGA
s HiC_scaffold_1 126656649 113 + 233722169 TGAAGATAGCAGTTTAAGAATCACTGGAATGAAGACAGGAGTTGAAGCCATGGCTGTATAAAAAATGCAACAGAAAAGAGTAGTTACTGGTAGAGTGAGAAAGATGAAGCTGA

a score=6239
s chr3            97404835 166 + 160039680 CTGTGAAGTGCAGAATTGCAAAATAAATGATAAGTCCACAATTTCATCAGGTCTCTTATGGGTCCATTAGAGCATTAATATAAGAATTGATGAAACCCTTTTAAGAAGAAGAAGAAAAAATACAACTAGATTTGCACAAATACTAGAACATTAAATTT-----TTTCCATT
s HiC_scaffold_1 126592516 169 + 233722169 CTCTGAATTGCAAAATTACAAAGTAAATTATAAGTCCACAATTTCTCCAGCTCTCTTATGTGTCAACTGTGGCATTAACTGGAGAATAAATAGAAACTTGTTCATTAGAAT--GGAAAAATACCAGTGCATTTAGATATATCTTATAGCTTTAAATCCCCAAGTCTCCATT

a score=12713
s chr3            97410245 913 + 160039680 AAGGCACTCCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACA-----GATTCATTGACAGAGGTGTCTGA-GCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACC---AAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 182441690 910 + 233722169 AAGGCTTCCTGAAAAGTCTTTTGAGAGCTCCTTTAACTTCCTGGTTCCTGAGGCTATAGATTAGTGGATTCAGCATGGGGGTGACTACTGTGTAAAAGATGGCAACCTGGCGATCCTGGTCCAAGTTGTAGCTTGAGGATGGCCGGAGGTACATGCGAATCACAGAGCCATACAGAAGAACCACAACTAGAAtatgggagctgcaggtggacaGAGCTTTGTGCAGGGCAGCAAATGAGTGCATGCGGGTTATAGCAATACCAATGCGGACATAGGAAgccaaaatgaagaagaagggaCTGACCACCACAG-----CTACACCCTCAGTGAATATTAGCATTTCATTGACCACTG-GTCGAATACAAGACAGCTGCAGCAGAAGAGTAATATCACAGAAAAAGTGGGTGACCAAGTTG---CCACAGAAGGTTAAGCGACTAACCAACACACTGTAAAGAAGGCTGTTAAGGCTGACGACCACCCAGGA---AGTCAACGTTATACGCAGACAAAGTCTATTGGTGACAGTGGCAGAATACTTTAGGGGGTCACAGATGGCAACATAGCGATCATATGCCATGGTAGCCAGCAAGTGGCCTTCCATGCTGCCcacagccataaagaaaaacagCTGGATCATGCGTCGGTTGTAGGAAATGGTTCGGTTCACAGACAGTGTGTGCACCAGCATCTGCGGCACAGTGATGGTTGTCAGAAATATGTCAATGAAAGAAAGCTGGCTGAGAAGGAAATACATGGGAGTCTGAAGTTTGGAGTCTGAGTGGGCAACAATTACTAGTAGGACATTGCCTGTAAGTGCAACCAGGTACATGGCAAGGACAATTCCAAAAATAACTGGCTGCATCTCTGGCCAGCTGGACAAACCCAGTAAGACAAATTCCATCACTTCTGTCCTATT

a score=19013
s chr3            97410245 895 + 160039680 AAGGCACTCCAGTCA---GTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCC-------------AGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGT---TGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTC
s HiC_scaffold_1 182286912 898 + 233722169 AAGATACTTTATTCAATAGTTTTCCGAAGGCccctttcatgtctttatttctcAGGCTATAAATGAAGGGATTCAACATGGGAATGATCACAGTGTACAGCACTGAAGCAATGATCTCATTGTCTTTGTTGCtgatggagggagga----------------agaaagtAGAGACCAATAATTGCTCCATAATAGAGAATCACCACTGAGAGATGGGATCCACACGTGGATAAGGCTTTGCAGATGCTCTTTTTGGAGGGAACCTGGAGGACCGTGACCCCAATACGACCATAAGAAAATAGAATATACAGGAATGGAAGCATAATGGCTGTCACACCTGCAGTAAAGATCACCAATTGGTTGAGGGAGGTGTCTGAGCAGGACAACCTGAGCAGGGCACCAAGGTCACAGAAGAAGTGAGGGACAATATTTTTAACACAGAAGGAAAGCCGACCCAGGAGGAGAGTGTGTAAAAGAGCACAAGCACAAGCAATGACCCAAGACATGGCTACCAGCTTGACACGAAGGCTCTGCCTCATAATGGTGGTATAATGTAGAGGGTGACAGATGGCCACATATCTGTCATAGGCCATTGAAGTGATAAGAAAACTGTCCAAGTCagcaaagaatatgaaaaaatatgctTGTGAAATGCATTCCTCATAGGTGATGGACAGGTCCTGGGTCCACATGTTCATCAGCATTTTTGGAACAGTGACAGATGAGAAAGAGACATCCGTGAAGGCCAAGTGGccgaggaagaagtacatgggggtgtggaggCGGGAGTCCAGCCTGATGAGCAGGATGATGAGTAGGTTCCCCAGCACTGTGGTCAGGTACATGACAAGGAACAGGGTGAAGAATGCAGCCTGCTGCTCTGGCCGGATGGGGAGCCCCAGGAGGAGGAACTC

a score=25719
s chr3            97410258 884 + 160039680 CAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCC------------CATGTC------CAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGG-CAGGGACT--CAGGCCAACAGTGGCACTGGACACATGGAGGACAGATT-CATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTG
s HiC_scaffold_1 177337474 902 + 233722169 CAGGTTCCTCACGGCAGCCTTCACATCTttattcctcaggctgtagatgatGGGGTTCAGCATGGGGGTCACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCCTCAGGATGGTGGTGAGGATGAAGACATAGGAGACAAAGATGAACAGGACCGGGATTGCCAGGAAGATCATGTTAGCCACCAC----CATACTGATCACGTTGACGGAGATGTCAGCACAGGCCAATTTCAGGACAGCCAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAGGGCAGCCTCATTGCCTGAAATGTCTGTACTACAGAGTTGATGATGCCAGCTGCCCAGGAGCCAGCAGCCATGGGCACATAAACAGCCTTGCTCATGACCACAGGGTACCTGAGTGGgttgcagatggccacatagcgatcAAACGCCATCATGCCCAGGAGCACACACTCTGTGGC-TCCCATGGCAAAGGACAGAAACATCTGCCCAAAACAGGCTGAGAAGGAGATGGTTTTCCTGGGAGTGAGGAAGCTGTCAAGGATGAGGGGGACAGAGGAGGTCGTGTAGCAGACGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggcgtGTGCAGGTGGGAGTCAAGGATGGTCACCAGGATGAGGACGCCGTTGCCCAGAAGGATCACCAGGTACATGGCCAGGATGAGCACGAAGAACGTTTTCTCCAGTTTTGGGTGAGCTGAGAGACCCAAGAGAACAAACTCTG

a score=14682
s chr3            97410259 893 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGA--AGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTT-TCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAAC----AGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTT---GGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACA------GAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACAT-TCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCC---TGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGT
s HiC_scaffold_1 180672326 893 + 233722169 AACTTCTTTAGCgcttctttcatttctctgttcCTCAGACTGTAAATAAAGGGGTTAGTTATTTGGGGGACCACAGAATACATCACGGAAGCCATAGCAGTTTTTCTGGAGGAGTCAGTAACTGCAGAACTAACGTAGACACCCAGTC--CTGTCCCATAGAACAAAAAGACAATTGTTAGGTGAGATCCACAGGTTGAAAAGGCTTTATACCTTGCTTTGCCT-GATGGAATCCTCAAAACGGATGAGATTATTTGAGCATAAGAG---AAAATGATTCCGGATAAAGGAACACCA-CCAAATATGAAAGCTGCCACATATGTGAGGATGTTATTGATGAGGGTGTCAGAACAGGCAAGTTTGATGATTTGAGCAAGTTCACAGAAGAAGAGGGGGACTTCCAGATCTGTGCAAAA--GGACAGATG-------CAGCACCATCAGAACAAGAAGGAGGGCATTCACAGTACTAATGGGTAAGGAAAGTAGAACCAGCAGAGCACAGAGGCGGGGATTCATGATGACTGTATATTTCAAGGGGTGACAAATGGCCACGTAGCGATCATAAGCCATTGCTG-CAAGAAGACAATTCTCCAAAccagcaaagaacaaaacaaaacaagcctgaGTAAGGCATCCTGAATATGTGATGCTCTGGTCCTGTGCTTGGATGTTCACCAGCATCTTTGGAATTGTTGTTGTGCTTAAACAGATATCAGTGAAAGACAGGTTAGAGagaaagaagtacatgggggtttGAAGGTGGGTGGTAGAGCTGATGGCCAGAATGATGAGCAGGTTCCCCAGGATGGTGACCAGGTATATGGACAGGAAG---AGGCTGAAGACGGGCAGATGCAGAGTTGGATCATCTGTtattccaagaagaaaaaaatttgcaacATTTGT

a score=14582
s chr3            97410259 899 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACA-----GGCAGGG-------ACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAG--GAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGT-------CACCAAGCTGATA-CAGACCCTTGTGCTCA----TGAGAACTGG----------ATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAG--GCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 182364675 899 + 233722169 AGTTTACCCAAAGCATCCTTCATGTCTTTATTCCTCAAGCTATAGATGAATGGGTTTAGCATAGGAATAATCACATTATAGAGAATGGAAGCCCGACTTTCTTTCTCTGTAGAGTGAGCTGAGGGGGGGAGTAGATACACACCCATAAGTGACCCATAAAAGAGAAGAACCACCGTGAGATGAGAACCACAGGTAGAGAAAGCCTTCCACCGCCCTCCAGGAGAGGAGATGCCAAACACAGTCCAGAAAATACGGACATAGGAGAAGACAATCAGCATGAGGGGCAGAGTGAGGAAGATCAAGCCCATGATGAT------------GATCATCAGCTCGTTAATGTGGGTGTCGGAGCAAGCAAGCTTCAGTAGAGCTCTGGGG--TCACAGTAGAAGTGGTGGATTACAATGTAGCCACAGAAAGTCACACGAGTTAGCAACAGTGTGTG--------------------CACAAGGGCAGGA--CAATTGGTTAGCAACAAACAGATAACTAACATTAGTACACAGAGTTGAGGACTCATGGCTGTGTTATAATGAAGTGGCCGGCAGATAGCCACAAAACGGTCATATGCCATCACAGCCAGGAGGCAGTTGTCAAGACCACCAAACAAAAGTAGGAAATATAACTGTGTAAGGCACCCAGGGTAGGAGATGGTCTGACTCTGGGTATGAATGTTGACCAGCATTCTGGGGATTGAAGCTGAACTGAAGCAGGCATCTGTTAATGATAGATTGGCCAGAAAGAAGTACATGGGCGTATGGAGGTGTGGGTCAGTGCAGATGGCCAGGAAGATGAGCAGGTTTCCAGCCATGGTGATCAGGTACATGCCCAGGAAGGTGCCAAACAGAAGAGG--CTGGTCCTCTGGTCGCTCAGAGAATCCTACCAGGAGGAAGTCTGACGCAGGGGTTTGGTT

a score=21314
s chr3            97410261 905 + 160039680 TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGG----AGTAGCCTTC--CTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATC---TGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTT
s HiC_scaffold_1 168220607 902 + 233722169 TTTCTTCACAGCTTCTTTCACCTCCttattcctcaggctgtagatgatGGGGTTCAACATTGGGGTTACTACTCCATA------AGACAGTCCAATGATTTCATCAGATGCTTTGGTAAACTTTGACTTAGGCTTCATGTACATAAAAAGGGCTGAACCATAAAATAAGATGACCACAGTCAGGTGGGCTGAACAGGTAGAAAaggctttctttttcccctcagAAGAATTAATTCTCAAGATGgaagagagaatgaaaatatagGACACACAAATTAACAGCAGAGGAATCACCAAAAAAACAATACTTGCCACTGTCATGATAAGTACATTTATGGAGATATCTGAACATACAAGTTTAAGAAGAGCCAGGATCTCACAGGTAAGATGATCAATGACATTATTACCACAGAAAGGTAACACCATTGTCATTACTGTTTGCACTAAAGAGTTTAGACAGCCTGTGACCCAGGACCACACAGCCATGTGTACATATAACACCTTGTTCATGATGATGTGGTACTTCAGTGGGTTGCAGATGGCTGCATACCTGTCATAGGCCATCACAGCCAGCAGGACACACTCAGT---AGAACCCAAACTAAGGGAGATAACCATTTGTAGAGCACAGCCAATGAAGGAGATGGATTTTCTTTCAGACGTAAACATAATGAGCATGGGAGGAATTGATGATGATGTGTAACAAATGTCCAAGAATGAGAGGTTTACAAGAAAGAAGTACATAGGAGTGTGGAGGTGAGAATCCAAGATGCTGATGAAAATGAGGAGGCTGTTTCCTAAGAGAATTATCATGTACATGATGAGACAGACCACAAACAGAAAAAACTGGAGTTCTGGGTATTTAGAAAGCCCCGTCAGAAAGAATTCAGCTAC---TGTAGAATAATTCATTT

a score=10717
s chr3            97410263 904 + 160039680 TTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTA--ATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGT--TGGCTGTTCCAAAG----------AAAACCACC--ACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAG-----CCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATT----TGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTG--CTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG--ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTC
s HiC_scaffold_1 180735818 893 + 233722169 TCCTCAGTGCACATTTTATATGTCTGTTCCATAAACTGTAGATGAAGGGATACAGCATGGGATTCACAGCAGTGTACATCACTGAGACCACCGCATG---ATTTCTGGA-------------TGAAGATGATATAAGTGAAGCAGTGTACACTCCAAAGCCCTTGCCATAAAGTAAGCAAACAACTGGCAGGTGAGATCCACAGGTAGAGAAGACTTTGTATTTCCAGTTTGATGATGGAATTCTTGAAATGGTAGgaccaattttaaaataagaaaaaatatctctGAGATCGgaaagaaac----agtaaaagaaacaacaaa---atatctgatgaaaTTACTGATAACAGTATCAGAAAAGGCAAGAATAAAAACTTGAGAagcatcacagaagaaattaacaatttctatatttttaagcaTGTAAATTAAAAG---GCAATAAAATTGTGTAGG--AATGAATCCGAAAGGCTAACTAAAAAAGATATCAACACTAAAGGGAGAT-GCCAGTTGGGGACTCATGTAGGCTGACTAATGCAGGATATGACAGATGGCCACAAACCTATCATAGGCCATCACAG----TGAGAAGCATGTAATC------CATGCTTCCAAAAAGGAGACATCTGGGTCAGGCAGCCCACATAGGAGATGACTGTGTTCTGAGTTAGAATGCCTACAACCATATTTTGGGCTGTGGTGGAGATGAAG-AGATTTACATTGAGGATAAGTTGGACAGGAAAAATTTCAGGAGAGTATGCAGGTCGGAATCAGTGCTGATGGCCAGGATGATGAGCAGGTTTCTGAGGACTGTAACCAGGTACATGGACAGGAATAAAGCAAAGAGTAGGAGCTGCAGATCTAGATCATCTGAGAGACCCAGAAGATGGAATTCTGAGTCACTTGTTAGATTAGTGTTTCC

a score=19182
s chr3            97410263 960 + 160039680 TTCTCAGC-GCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCA---TGTCCAGGGAGTAGCCTTC---------------CTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATT-CATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAG-AGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAG---AAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTG---TGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTG---TGATTGGTCATTTC---------AAATGGAGTCATTGCTACAGAGAACAAAGGATCGAGAGTAAATATGTACAGAAGAT
s HiC_scaffold_1 168341730 980 + 233722169 TTCTTAACAGCAGACTTTACATCCTTGTTCCTCAGACTATAGATGAGAGGATTGAGCAAGGGAGTCATCACCCCATAGAAGAGGGAAATGAGAGCCTGCAGGATGTCTTGATTATCATCCTCAACAGTGATTTTAGACTTGGGCTTTGCATACATGAAGAAGAGGGTCCCATAGAATATAATCACCACCGTGAGGTGGGCTGAGCAGGTGGAGAAGGCCTTACGTTTTCCTTCAGTGGAAGGAATTCTCATGATAGTAACAACAATACataaataagaaatggaaattacTAGCAGGGGAATAACTAGAGCAATCAGGTTTGATGC-TGCCATGCTGATTACATTGATTGAAATATCAGCACAGGCCAGCTTCAGGATAGCCAGAATTTCACAGACAAAATGGTGAATGACATTATTGTTACAGAACGGTAATTGCA-TTGCAAGAGATGTCTGTATCACTGAGTCAACAAGCCCAATGACCCAAGGTACAGCTGCCATGGGAACATAGACATCTTTGGTCATGATGCCAGAGTATCTCAGTGGAtagcagatggccacatagcggtcaagTGCCATCATGCCTAAAAGGACACATTCTGT---GGCACCTGTGGCAAAGGACAGGAACATTTGTGACATACACCCAGAGAAGGAAACTTTCTTCTTTGCTCTCAAAAAGGTGTCAAGAATTAGTGGGACAGAAGAGCTTGTATAACAAATGTCCAGGATGGAAAGATTGCAGATGAAGACGTACATGGGGGTGTGCAGATGAAAGTCG---TAGAGGATCACTGTGACGAGTACTCCATTTCCAAGCAGGATCATCAGGAACATCCACAAAACTAGCACAAAGAAAGCTGTCTGGAGTTCTGGATGGTCAGAAAGCCCAACCAGTACAAATTCTGTCA---ATGTGGAATCATTGGTTCTTTCCATGTTATTACATAGAGTC-TTTCTCC----AACAGAAGTTTGTGGATG---ATGAACAGAAAGT

a score=17557
s chr3            97410271 896 + 160039680 GCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACAC---------TAATATGCCC-------ATGTCCAGGGAGTAGCCTTC--CTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGG------ACTCAGGCCAACAG---TGGCACTGGACACATGGAGGACAGATT-CATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAG---AAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTG---TGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTG---TGATTGGTCATTTC
s HiC_scaffold_1 168291373 916 + 233722169 GCAGACTTTACATCCTTGTTCCTCAGACTATAGATGAGAGGATTGAGCAAGGGGATCACCACTCCATAAAAGAGGGAAATGAGAGCCTGCAGGATGTCTTGATTATCTGCCTCAGCAGTGGTTTTAGACTTGGGCTTTGCATACTTGAAGAAGAGGGTCCCATAGAATATAATCACCACCGTGAGGTGGGCTGAGCAGGTGGAGGAGGCCTTACGTTTTCCTTCAGTGGAAGGAATTCTTATGATGGTAACAACAATACATAAATAAGAAATGGGAAATTATTAGCAGGGGGAATAACTAGAGCAATCAGGTTTGATGCTG---CCATG-----CTGATTACATTGATTGAAATATCAGCACAGGCCAGCTTCAGGACAGCCAGAATTTCACAGGCAAGGTGGTGAATGACATTATTGCTACAGAATGATAATTGCATTGCAAGAGATGTCTGTATCACTGAGTCAACAAGCCCAATGACCCAAGGTACAGCTGCCATGGGCACATAGACATCTTTGGTCATGATGCCAGAGTATCTCAGTGGAaagcagatggccacatagcggtcaagTGCCATCATGCCTAAAAGCACACACTCTGT---GACACCTGTGGCAAAGGAAAGGAACATTTGTACCATACACCCAGAGAATGAAACTTTCTTCTTTGCTCTCAGAAATGTTTCAAGGACTAGTGGGACAGAGGAGCTTGTATAACAAATGTCCAGGATGGAAAGATTGCAGAGGAAGACATACATGGGGGTGTGCAG---ATGAAAGTCATAGAGGATCACTGAGATGAGTACTCCGTTTCCAAGCAGGATCATCAGGAACATCCACAAAACTAGCACAAAGAAAGCTGTCTTGAGTTCTGGATGGTCAGAAAGCCCAACCAGTATAAATCCTGTCA---ATGTGGAATCATTGGTTCTTTC

a score=3685
s chr3            97410436 383 + 160039680 AGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAG--------TAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAA----GCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCAT
s HiC_scaffold_1 180626847 383 + 233722169 AGATAAAAGGCAAAGGAATAAAAGACCTTATATTTCCCTTCTGATGATGTCATTCTCAGGATTAATGACAGAATgggaatataagaaaatataattcaaaacttAGAAACACCACCAAAGATGAAAGCTATAACATATATTACTATGTTATCAAATCAGATATCAGAACATGTGAGCCTGATGATCTGAGCACATTCACAGAAGAAATG--TGGCATTCTAAGCACTGTGCAGAAGGACAACCTTAGGGTCCTC----AGGCTGT-TGAGT-----AGTCCACCCATGGTGCTAATGGTCAAGGAGAAGAGAATCAATAAAATACCCATGCATGTGTTCATGGTGACTGCATACTTAAGTGGATGGCAAATGGCTGCATAGCAGTCACAGGCCAT

a score=7974
s chr3            97410440 697 + 160039680 GTGAGGCACA-GGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGT-GAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGA-----TTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGA------CCCTTGTGCTCATGA-GAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGA--TCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAA
s HiC_scaffold_1 182068316 672 + 233722169 GTGAAACCCATGGTGGACAGAACTTTACAGATTTTCTTAGTGGAGGGGACCCTTAGAATGGTTGCCCCAAAGCAGACATAAGAGTCCAAAATAGCATACTCAGTGGC--AGGAGAATA-CAACACTCCCCACTCAGCGGATACAACTAGCTCATTGAGGAAAGTACCT-AGAAGTTCAGCTTCAGGAGCTCATTGAATTCACAGAAGGAATGAGGGAT--GATACTGGCACAAAAGGAGAGGTGGG-------ATAGAAGGAGAGTGG--GCatggacaaaagagaaaaaccaggaCCCAGCCATCAACAAAACACATAGCCCCTCCATTATGATCGTGGTGGAGTGGA--------GTGTTGATGGA-----AAATACCTGTCATATGCCACAACTGCAAGGAAGAAATTGTCAATacatacaaaaaataagaaaaaaaatacatctgaGAAATGCACCCCTCATACAGAATGAACCAATACTGAGCTTGCATGTTCCCACGCATCTCTGGAACAGCGACACATCAGAAAGAGACATCTGTAAAGGTCAAGTGGCTGAGGAAGAAGTACCTCGGGGTTTGGAGGCAGGAGTCCAGCCTGATGAGCAGGATGGTGTGCAGGTTTCCCAGGAT-------------ATGACCAGGAACAGGGCGAATAACACAGCCAGCTGCTCTGGCTGGATGGGGACCTTCAGGAGGAGGAA

a score=7558
s chr3            97410944 150 + 160039680 TAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGA
s HiC_scaffold_1 126641195 148 + 233722169 TGGGCATGAGGCAGACATCCAAGAAAGTCTAGTTGCTGAAGAAATAATATGTTGGAGTGTGAAAAAGAGGACTGACC-TGGTAACCATTGTTATGAGCATGTTCCCCAAGAGAGTTGTCAGGTAAATAA-caggagacaaaaaaagaaga

a score=4453
s chr3            97568067 149 + 160039680 ATATGAAACATATGTGAATTTTGTACTTAGACTTGGATCCCAACACCACAGACTCATACAGTACACGCAAATATTCCGATTTTTCTTTTTAAA----TCTGCAATTTGAAACATTTGTGGTCCCAAGCATTTTGGATGAGGGCTACTCAACCT
s HiC_scaffold_1 118291079 144 + 233722169 ATATgaaacata-----gtttttttttaaggtttggGCCCCAACCCCAAAATGTTTCATTATTTATATGAGTAT----GTTCTACAATTTGAAAGTATCTGAAATGCAAAACACTTGTAGTCCCAAGCATTTCAGGTAAGGGTTACTTAATCT

a score=4250
s chr3            97579183 136 + 160039680 AGTTCATGACCACCAAGCCTGCAGTGCAGAAGGTACTTACAGGAATACTCTACACAGAGGGGGAGGAAGAGAGTCTGTCATGAACACACAGGAAAGAATAAAAGTCCTGAGAAGAAGAATAAGGGAGAGCAGGGAA
s HiC_scaffold_1 139028805 130 + 233722169 AATTCATAACCACAAAGCCAGCAGTGCAGGATATACTTAAAAGAATTCTACACACAGAAGAGGAAGAGtagataagcaaataaaaattaggGAAGAATTAACagtt------agaaaaacaacaaaatgaaaggaa

a score=4247
s chr3            97649958 118 + 160039680 TTCAGAGAAAAAAGGGGACTTCCTTATCCGAAATGCTTAGGTCCAGACATATTCTGGATTTCAGATTTTGGACAATTTGCATCTGTGTAACAGGTTATCTCTGGGCTGAGACCCAAGT
s HiC_scaffold_1 139244011 118 + 233722169 TTCTGCCAAAAGGTGGAGTCTCTTTATCTGAATTGCTTAGGACCAAAAGTATTTTAGAGGGTGGGTTTTGGAATATTTACATCTACATACTGAGGTATCTTGGGGATGGAGCCTGAGT

a score=5217
s chr3            97649978 144 + 160039680 TCCTTATCCGAAATGCTTAGGTCCAGACATATTCTGGAT-----------TTCAGATTTTGGACAATTTGCATCTGTGTAACAGGTTATCTCTGGGCTGAGACCCAAGTCTAAACATGAAATTAATTGCTTTTTCCTATATACCTT-TATGCATAG
s HiC_scaffold_1 121437908 156 + 233722169 TCCGTATCTTAAAAGCTTAGAACCAAAAGTATTTCAGATATTGCATTATTTTCAGGTTTCAGAATATTTGCATATGTATAATAAGATACCTTTGAGGTGAGACTCGTGTCTAAATATGAAATTCACTTGTGCTTTATACACAGTTCATACACAtag

a score=5716
s chr3            97649979 205 + 160039680 CCTTATCCGAAATGCTTAGGTCCAGACATATTCTGGATTTCAGATTTTGGACAATTTGCATCTGTGTAACAGGTTATCTCTGGGCTGAGACCCAAGTCTAAACATGAAATTAATTGCTTTTTCCTATATACCTTTATGCAT----------AGCTATTTTATGGGACTTTATACTGCTGTGCCTGT---CTTTGAGTGTGACCTGATACTTGAGATCA
s HiC_scaffold_1 204834204 212 + 233722169 CCTTACCCAAAACACTTAGAGCCAGAAGTGTTTATGATTTCAGATTTGGAAATTTTTACACACACATAATGAGATATGTTGGGGGTAAGACCCATATCTAAGTATGAAACTCACTG--GTTTCATATGTACC-TGATACATGCAGACTGAGAGCTATTGTATTCAGTTCT---TTTCAGTGCATGTACACTTTGAGTGTGACCCATCCCATGATGTCA

a score=17661
s chr3            97689252 466 + 160039680 tcctcctcttcTCTAGTAGCAAATGGTGCTTTTCAATCAGCAGATTGTTTGGGCAA--CTTCAGCCAGTCTCCCTAAACTAGTCA--CTGCCTGCACCAAGCTGGTTTAAGCTGCAGAGAAGCATTTCTGTCAGCTGCTCTGTCTCAGTGGAGCCTGTAATTGT-------------------GAAGACTGAACTTCAGGGTTGTTGAAATGGACCACTGTTCCTTGGTTTGTAAACACGTTCCCCTCCTCACTATCAGAGATG-TGTTCACACCTAACTTCCTTAAGAAGAACTGCAGTTTTT----------ATCTCCTACTGTGGCTGTCCTATGGCCTATCTTCTTTCTGTGGGTGGTGCCTTTCCCACCAACACACACTTGTGCCTACAGTTTGGTGAGTTTTTCCTGGCTCACGACTATTTATTTCATTTTGTTGAAG------TGGAATTCATGGGGGGATTAGGATTCACACTC-GGGGTCTCTGGTAGACCCTCTGAG
s HiC_scaffold_1 167439601 506 + 233722169 tcatcaTCCTCTCCAGTACCAAGTGGTGCTTTTCCACCCATAGATTGTTTGGGTAGAGCGTCATCCAGCCTTCTTAAACTAGTAAGATTGTCTGCACCAAGCTGGATCAAGCTGTTGGGTAGCATATA-GCCAGCCACTTCATTTCAGCATGGCTGGTAATGGTAAAAGTGTTTTCTGCCAGAGAAACCTGAGCTTTTGGGTTATTGATGTGGATAACTGTTCTTTGGTTTGTAAACATATTCACCTTTTCAATACCAGAGATACTGTCTACCTCTAACTTTTTTAATGACAActgaaatttttggttttttttatcatCTGTTGTAGTTGTTCTAGGAACCACCTCATTTCTGCAAGCAGTTCCTTTCCCATCAATGTGCACTTGTAGCTGCAGTTTACCAAGTTTTTCCTGGTTCATCataatttctcttctcttctcagaGCACATCTGGGAAGCTGTTGGGGACTAGAGCTGGTGCTCAGGGGTCTTGGGCAAACCAGCAGAG

a score=13846
s chr3            97814353 1585 + 160039680 caAACTGTTTAGAGACAATTCCTTGGAAATCCAAAGCATCAATTTTCCATGTGTGTTCTGCTACATGCACTCTGTCTGATGACTGCCTGACTTCAGCTTTCTGAGACTTTTGAAGGCATTCATA-TCTATTGATTGTCCTTTGGGAAGTAAAAGTTGGAAGGAGGTAGCAAGTATCCACTAAACACAAATATCTTTTAAATATTTGTAACTGATATGTTTGTCCTTGGTTAAA----TTTTATTAGAGCTTCACATCCATGGTGATTGcacacacacacacacacatgcacacacaGAGAGAGAGATGAGAGAGAGaacaaatgttcaaaga-----aaaagttggaagccatgcatactg------------taaaatggttcatctatatgaaaat-attat--ctattcctttgaaaattacacataagattaccatatactccaaccattcttgtctgggtCCGGAAACCCATCTCAAG------------------CAGACATTTACCAACCTGTGATCACAGGAACC-TATTTAGAATGCCAAATGGTGGAGGGAG--TAGGCATG-----------GAGACATGACAA--atacgtaatgaactggaatttagcctaccaaggaaattctaacacaagctatgatgtggctgaacctggagggcgttacacgaag------cagtcacaaacagacaaatgtattgtttcccttacatgtgtcagttgtgagatcatgaagactgaaagcacagtgaagat--------gggtggaaagaccagggaatgggaagttggtgtttgat--aaagacagtttcagctggggtcaagttcagctctgtggataggag---ggtgatgctcgtacgtcagtgtgattgcacaaactgc-----acacttaaa-gtagttgtaaagctcaatcttgt----tacatattttactaTTATACATTtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagaaagagagagagagagattagagaccagagataaatgttgggcatctttctctattggtgttcaac------ttattttttcagaggtttctcactgaacctgaaactcactaatttggctagattggctgctggtgagctctgggatAGGCCTAGTACCATCAATTCTTTTTGTTTCCTCcccccacccccatccccacccccacACCTCTGCATCCCTTCTACTGTCACTACTATCACCTCCACCACCCGACCCCAACCCAACACTGGAGCCACAAACACTGGCCTTATCAGAGTTTTTCTTCTAATCACTGGGAGGCAAATCCCAAACTGAATCCTGGGGCCCAACATAATTCAAATCCACCTTCACTCACCTTCCTGATCATGGTTACATAGTTTATACTTCTGTCTGCACTTATTCCAAAGCC-ACTCTTTCTAATAGCTGTGTGCATCCAGATTTTCACAGCAATAGCCAAGGGATGGTACTGTTGAAAGAATGCCTGGTTTAAGCTTCTAGCTTGGATGCTCACCTTGTTAACAGTGCCACTTTAGC---------TGTGTGCACACATGCATTCCTGCATGAGGTCAAGCATCTCTTGATTACC------ATACACTGTCTACTGTGGTAGCAGCTAGTGGAAAAAGGCATTCACAAAGAAATAAAGATGA
s HiC_scaffold_1 126094224 1427 + 233722169 CGGACTGGTTTTAAACAGTTTTCTGGAA-TCTGAAGGAACAGGT--CCATGTATGTTCATGTATATATTCTCTGT--GCCAACTCCTCATCTTCAGATTTCTGACTTCTGTAAAGACACATTTactcttttattcttctttttgggAATGGATGTTAGAAAAATG-AGAGAGGCtccattca-------------ttaaatatttgtaccA---ATTTTTATTGTTGGTTAAAACAGTTTTA--ACATCTACctattca----gattttctgtttacacacacacatgcaaata----gaaaataatgagT----------ATTTATGAAGATTTGGAGAAATTGAAACCCATGTATATTgctaaaggaaatataaaatagttcatttgtgtggaaattagtatggcaCTTCTTCTAAAACTTAAACCGAA--TTAC-GTATAATCCAAA-------GTCTCACTCTAGGTATATACcccaaagaagggaaaagaaggactCAGATAGTTGCATGCTTATGTTCATAAGAGCAGTATTTACGATAGCTTAAAGTGGAAAAATCCTAAGCGTTCACTGACACTTGGAACATGGAAATTACACACAATGGACTAATATTTAGCCT-CTAA--CAATTCTGACACATGCTATAACTTGA-TGAGCCTTCAGGATATTATGGTAAGTAAAGCCAATCACAAAAAGATGAATCTAT-GATCCAATGATATGAGAAAATC---AGATAATaaagacagaaagcagaatggATAGTTCCAAGAGTGGGGATGGAGCAGAGAATTGAAAGTTACTATTTAATGGATACACAGTTTCAGTTTG----AAGAATAGTTTTGGAAATGAGTGATTGGTGATGGTTAGATAATAATGTGAATAAACTTAATGCTATAGACACTCAAACATGAATAACAAGACAAACTTTATGTTGtgtgtattttatca-----catttcaGTAACTGTC--------------------------------ATAGTTCCTTAAAAATAGTGAATCTATTGACCAAAACCAACT-TTG-----CTTTCT------GTTCTTAACAAGTTCTTATTTTGTTATAACTTTT-------AATTAGAATTCA-TAAT-------ACTTTTCTGTTAA---------GAAAAAGTTT-----------------------------------------------------CTTATGAATCCTTAATAATTT-------------TCCAC------------------------------------------------------------AGTTACTGAGAGACAAATCCCCGCTAGAATTCTGGAGTCTAATTTAATTCTAAACAACTTTTGGTTATCACTTTAACAATATCTACATAATTTATGCTTCTACTTGAACTTATTACAAAGCCTTTTCTTTCTATTAGTTGTGTATATCTATGTTTATACACTAATAGAGAGAgaatgttatatttaaaataatagacaTCCCAAATTTCTGTTTCAAATATTTCCCTTATTTGAAAT--CACCTTGGCATTCATTTACTTGTCTATACATGCATTAATGTATTCAGTCAAATATCTATTGAATATCTGTTGAGTATGTTGGTTACTACACTGGGTGCTGGTAGAGATAGAC---CTCAGATAAATAACAGTGA

a score=6347
s chr3            97907221 112 + 160039680 CAGGCCGGGACCTTCAACAGTATCAGAGTCAGGCTAAGCAACTCTTTCGAAAGTTGAATGAGCAGTCCCCTACCCGATGTACCTTGGAAGCAGGAGCCATGACTTTTCAGTG
s HiC_scaffold_1 192998664 112 + 233722169 CAAGGAGGAACCTTCCATGGTGTCCGAGTCAGGCTAAGTCACTCTTTCAAAAGCTGAATGAACAATCTCCTGTGAGACATGCCTTGAAAGCAGGAGTCGTGAATTTTCACTG

a score=7877
s chr3            97912594 148 + 160039680 GGGGTGTGTTACTTGGTTTTGTGTGAAGCTGCCTTCCCTAAGAAGTTGGCCTTTGCCTACCTAGAAGATTTGCACTCGGAATTTGATGAACAGCATGGGAAGAAGGTGCCCACTGTGTCTAGGCCCTATTCCTTCATCGAGTTTGGTA
s HiC_scaffold_1 192998847 137 + 233722169 GGAACGTATTATTTGGTTTTGTGTGAAACTGTGTCCCCTAAAGAGTTG-----------CCCAGAAGCTTTGCACTCAGAATCTGATGACCAGCGTGGTCAGGAGCTGGCTACTGTGTCTAGACCTTACTCCTTTATTGAATTTGATA

a score=8534
s chr3            97914498 148 + 160039680 GATACCTTCATTCAGAAAACCAAGAAACTCTACATTGATAGCCGTGCTCGGAGAAATCTAGGCTCCATTAACACTGAATTGCAGGATGTGCAGAGGATCATGGTGGCCAATATTGAAGAAGTCCTACAGCGGGGAGAAGCACTCTCAG
s HiC_scaffold_1 192998980 146 + 233722169 GATATCTTTGTTCAGAAAACCAAGAAGCTCTACACTGATGCTTGTACCCAGAGAAACTTAGGTTCCCTCAACCCCGAATTGCAAAATGTGCAGAG--TCATGGTGGCTGGTACTGAAGGAGCGTTGCATCGGGGAGACGCACTCGTAG

a score=50151
s chr3            97921113 2163 + 160039680 AGCATTGGATTCAAAGGCTAACAATTTGTCCAGTCTATCTAAGAAATACCGCCAGGATGCGAAGTACCTGAACATGCGCTCCACTTACGCCAAGCTTGCAGCAGTAGCTGTGTTTTTCATCATGCT-GATAGTGTATGTGCGGTTTTGGTGGCTGTGAGAT-GTGAACCTAGTCACTAGTAAGGGAGAACCTAGAACCCCGCAG-TGTATGTTTTCAGGAAACTGAGCTCACAGGGCTGTGTATTAGAATCCACGTGGAACTTCTGCCTCTAAAGACCTTGCAAGAAAAGACCTGTCCTGAAAATGAAAGATGGCGCCTCGTTTAAGGAAGCTTGACCC-ATGTGGAAG---TCTCTCTGGGACAGA--CTTTCTCTGGGTGCTGAGCTATATGTATTAGGGAACAGTAGGTTGTCTGTTTTGTTTCTCTCCCTCCCAGTACATGTGTGAGGCAGCA--GAACTGGGGCATTCT--CTCTCTGATGGAGCCATCAGTGAGATTTAAGGTAGCCAACCCATTCTAGCAGCATCCTGAAATTCTGTCAAAGAAGGCGGCCCTCTGGGGAGTCCT-AACTTTAATCGACATT------CCTGTGTTGGTAGCA---GTG---------------------TGATTGACTTTCAAGTGAGACAC--------AGTATGTGAAGGTTCATGATGCACAGATCCTATGTGTTGGCCATTGTAAGAAGTTAACTTTCGTTGTTTCCCTTTTAT---ATTTTGCTTATTGCACAGTTGCTTTGGAATTAAATCAATTATA-TAATATGCCTTGAAATTATATAGTATTGCTTGACTAAAAGGATGAATTTTTTTTTTCTGTCATTTACTCtttgttgtttgtttttcttttctttttgtttttttttttgtttgtttggttagtttgttttgttttgttttgttttgttgagacagggtctctctagcctcagttgtcctggaactcatgaaccaggctggccttgaaatgacaaagatccaccttcctctTCGTTTACTCTTTAACTCTCTTGGGACATTATTATTTGGGACTGTTTGGTCTCTGT------AGAGTTGGTGTAGCGCAGGGTAGTCAGAGGCCCT--GCTTTACGAGAAGAAAGGCCCAGCTTAAAGCTCCAACTCTGCCTGCCCCTTCCTCCCACTTTGTCTATGCGTTCCCAATTCTTGGTTTTCTTTttttttttttttttttattacatattttcctcaattacatttccaatgctatcccaaaagtcccccataccctcccccccacttccctacccactcattcccataattcttggTTTTCTTTACGACATAATTTGCTTAAATCTATAGTCTCCTGTCCCATAAATATCCTATCAGGATATTCACAAATTGCAAATGTGATGTACTCAACAATGTAGTTAGTTAAATTTATTATCTTTGCAGATCAGCTACTCAGACACAAACACTCACATA-ACTTATGAAGGACACCTCTGAGAGCCAGTCCCTCATTTCTGTTTCAGCTTATGTAAATTCTGCAAGAATGTTTTAGATATAAATGACTCACGGACAGTGACTTCTG-TAAGCAATGGGAGTACATCAGTCTTCTTTCCCCTTTTTGCTCAGGGATAATGGGGATATCTCCTTTCACCTTCTGAGGTAGAATTTTATAAGTGGGAAGAATAGGCCTTTTGAGTATTATCACAAGGGGCTAT----AATATAACCTATAAGTCCTGCGCACACTGCAAACATCTCTTTAAATTGTACTGG-AAAACGAGCCAGTGTCTTATTTCTTAGCATCTTTGAAGAGACTTTTGGTAAGCGGTTTTATAACCCTAGG-GATCATCA---CTGCTGCCCT-ATTCCTGGCGGAGGACAACAGTCTCACTTCCTTATGAGAAGCCTGGTAGGGATGCTTATTGTATTCCTAGTAAGTT-CAGAACTAGAATAAATGTT---CTTCTATTATGAACAT---ATCTGCCAATTAGAGTTTTATGCATGAAATACAAAATGACTTTTTATAGAGAATAAGTGCTTTTAAGTCTTTAAAAGGCTTACCCCATAAATAATGATATTGGCAATAAAAACCTTTGGAAGACTGAAAACCCTAAGTAGTCGCACCATAGTGCTTGGTGCTTACCTAAGAATGGAGGGTGGCAGCTCACTGTTGGGAGTTGCATGCTGCAACTTAATGGTCA-GAATGAAATAAATACTTGTAGAATGTTA
s HiC_scaffold_1 192999124 1920 + 233722169 AGCACTGGACTCAAAGGTTAA-AATCTGTGCAGCCTGTCCGGGA--CACAGCTGGGATGTGAAGTACTTGAGTAT-TATGGCACTGACGCCAGACCTGCAGCTGTTGCTGTGTTTTTCATCCTGTTCAAAATTGTGTGTGCGATTCTGGTGGCTGTGAAATAGTAAATACGGTCACTGGTAGGGGAGAGCCTAGAACGCAGTGGATGTATGTTTTCTGGAAGCTAAACTCACAGG--------------------TGGAACTTTTGTCTCTAAAAACCTTGCAGGAAAAGACACATCCTGAAAATGAAACACCACCCATCATTAAATGAAGCTTACCCCTATGTGGAAATTCTCTTTTAGGGGCAGAGGCTTTCTTGGGATGCAAAGTCATATGTGCTCAGG-ATAATAGACTA--------GTTTTTTCCCCTCCtagtaagattttaaaacatcacTGGCTGGGGGCGTTCTGATCCTCTCATAGAGCCATCGGTGAGACAAAAGGTGGCCACCCTGAGCTCGCAGCACCCTGAAACTCCTTCCCAGTTGGCAGCCCTTCGGGAGGTTTTGAAGTGTAAGCAGCATTTCTTCCCCTTTGTCGGTGACATTTGTGATTTTCAGTAATCTGAGCTTTTGATGGCCTTCCAAACCGGACTCCAGGCGCGCGCGCGTTAATTGCTATGCTGTGCAGATCCCGTCTGTTGGGCCCTGATGAAGGTGCGTCTTTCTGGTTTTCTATTTATGACATTTTGCTTGTTGCCTTGTTGCTTTAGAGTTCAATGAATTACAGGAAGATGCCTTGAAATTACATAGCATTCCTTGATTGAGAaactgaa-gttttctttctctgatttaCATTTAG-----------------------------------------------------------------------------AACAAAA-------AGACTCAGATGAGCTTGA----------------------GAcatga------------------------------ttaaat--------------ttattttgcagCATTTGGTTTATATTAATAGAAAAGCAACATAGGGGAGTGTGGCCAGAGTCCCTCGGCGTGGTAAGAAGAAAGGCCCAGCTCGGCG-------------------TTCATCC-----------------CCCAGTTCACTGTGTTCTCTGCTCTTCGTTTGT--------------------------------------------------------CCCCGCTCTTCACTTTCCTCC--------TGCCACAGG--TTGGTGACCTTTAAAACAT--TCCCCTTTGCCCACGAGTTTCATGTCCC------ATCCTCTCTGGAACCTCTCAGCTTTTCAAGTGGAAATGTTCAGCGATatagttatttaaatttaaaatgtc--aagatCACCTACT------CAAACTCCCAGCTACACTTACCTGAGAAGTCTCTGAG----AGTGCTTCCATCCCATTTCAGTTTATAT-AATTCTCTGAGAATGCTCTAAAGCTCAGTAAGTCATTCACAGTACTTTCTGCTAACTCATAAAAGTA-GCTatagatattttcctttttcacgCGGGGATAATGGGG---TTCCCTTTCACCTTCCAAGGTGGagttttttaaatgaagagaatAGTTCCTGTGAATGTTATTGCAAGGTTCTATCACACATACAAGCTGTAAGCCCTGCACATGCcgcaaatatttctttaaattttataaataagataatcccttttcttatttctgaacatctttgaaaaaataactaAGGGACAAGTTTGTGACCTAAAGTAATCATCAGAGTTACTGCCCTGAGTCCTGGTAGGGAAAAATAGTCTTACCTCCTTATAATGAGGCAAGTGGAAATGCTTATTTTATTCTGTATAATTTACAAAACTAGaataagttttttctttctattatagACCTGAAATTTGCTCATCGGAGTTTTGTGCATGAAAtcagagttttctttttatggaGAAAAAGTGCTTTTAAG-CCATAAAAGGTTTATTCCTTATATAACAATGTGGGCAGTAAATG--TTTGATAGGCTGAGAA-TCTGAATAGTGGTACCATAGCATTCGGTGCTTTTCTAGGAGT-GAGGGCGGTAGCTCAGTGT-----------TGCTGCAGCCTGACAGTCAGGAGTAAAATAAACATCtctagaatatta

a score=19394
s chr3            97944431 980 + 160039680 AATTTAAGCCTCTCCAAAGTATGTGGTAGAACTAAAGAAAAAGACATCAGCCAACAGTCCTCTGAA-CTGTCATTGGCTCCCTCAATAATCCCAGGCAAAAAAATTAGAATTCACCACTGCAGC----------------------CCAAGATGCTTGACATGAAGGCTTGGGCTAAGA-----ATGGCGTGAGCTGCAGAG-ACCCACACAGCTTCCTCGCAACAGTGACT-TGGCCCGCAAGCCAGGGTTCCTAGCTAGCGCTGGATTGCCCTGGAATTTGGCCAAGATGACTGCAGCCAGGGGGAAAGAGCAAAGGAAGAAAAAAAAAAGAAAAAGTCAAGAAAATACTGCAAAAAACTGAAGGAATGAAAAAG-GACTGAAGAAGTGCACAGGCTCTGCAGCTCATGAAAACTCATCTGGAAAGTCCTG-GGCTTAGGAGGGACTCCGTG--GTTTCCCTGGATTTCATGACAGTGCGCTTTAGCAAATTAAGTCTGACTGAACCCCACATACAAGAAGAATCTT-----ATGCCAACCGCAACACTGTAGTAACTTCTGGACTTGGAAAAAGAAGTTTGTTGGTTTCTACTGACAGGTCATATAAGTGAGTATTTATCACATAGGTGAAGCACATCTAATACAGATTTTCCTGCAAAACCCCACACGTGTTCAACATGAGGCTGGGA----------CAA--TGACATTCCATACCAGCCTTCTGATGGGTCTCAGTCAAAATATAGGTCACTGAAGAGGTTATATAAATTACCTTTAG-CTACAAGAAATATAAATGAACTCTGTGTTTAGACTTGGAT-ACATCCTTAGGGTA-----TTATG-------AAATACTCTAAAATCTGAAAACAAAATTAAAACATTCCTGGTCCCAAGCATTTTGTACGCTCAACCTGTAAT--AAAAATTCTCTA-AACTGAC--AGCCATCTGC--CTTTTGGGATCTTATACATGCACATAGAAAATATCATGTGGGGGAAAATGGCTTTATATTATGAATCCCATTCAAATGGCAGTTTGA
s HiC_scaffold_1 152231712 971 + 233722169 AATTTAATCTTTTCAAGAATGTATGTTAGAACCAAA----ACGACAACAACCCAGGGTCGTCTGAAACTG--ATTAGGTTCCT-GACAATGCTGGGCAAAA----TGAGAGTCACTACCCAAGCATGTTATTTCCCAAGACTGCtgcagagatgctgaacataaaGATTTGGGCTGAATTTGATGTGGAATGGACTGCAAAGGACCCAAAAAAC---CTTAcagtagtttttctgttttatacttCACTGTGCCTAACAAATGCCCTTTTGATCTAGAAATTGGCCAAGACAAA-GAAGCCTGGGAGAAggtgcaaaagaagaaaaaaagctgtcaaag-----aaaatATCGCAAAAg-ctaaacaactgaaaaaaagattGAAGGCATGAATAGGCTTCACAAGCAGAGCAAAGTCACTTGGAAAAGTCTGCAGCTTCGGAAGGACCCAGTGAGGTTTCTTGGGATTTCATGAAAGT------------------TATTACTG---CCCATATA---GAAGCATCTTCCTAGAATCTGACCTCAATACTATAGTAACTTTTAGACGTGGCCATAAAAGCTTATTGGTGTCTATTGGGTATTATTGTAAACTAGCATTGATTATATTGGTTGAGCATCCCTAATA-------TCC-----AACCCAA----TATTCTATGTGATGCACAGATCTGATGCCTCAAGTGGAAAATCCACATCTGACCTGTGACAGGTCTTattcaaaa------atactaaaaatgttgCATAAATGAACTCAAGACTATATGAA--ACAAATGAACTTTGattttagacttgggtcccagcCTCAAGGCATCTCGTTATGtacatgcaaatattccaaaatctggaaAC--ACCTAAAATATTGCTGATTCCAGGCAGTTAAGA----GAAATGATAGTCAACAAATTCTCTATAACTGACCTAGTTATTTGTGACTTTTAG----CTCTATTCTGAAAT-GAAAACATCCAAT-GGAAAAAATAACTTTACACTATGAACTTTATTCAAATACTGGTTTAA

a score=11309
s chr3           97944820 671 + 160039680 CTGGAAAGTCCTGGGCTTAGGAGGGACTCCGTG--GTTTCCCTGGATTTCATGACAGTGCGCTTTAGCAAATTAAGTCTGACTGAACCCCACATACAAGAAGAATCTTATG--CCAACCGCAACACTGTAGTAACTTCTGGACTTGGAAAAAGAAGTTTGTTGGTTTCTACTGACAGGTCATATAAGTGAGTATTTATCACATAGGTGAAGCACATCTAATACAGATTTTCCTGCAAAACCCCACACGTGTTCAACATGAGGCTGGGA----------CAA--TGACATTCCATACCAGCCTTCTGATGGGTCTCAGTCAAAATATAGGTCACTGAAGAGG-----TTATATAAATTACCTTTAG-CTACAAGAAATATAAATGAACTCTGTGTTTAGACTTGGATA-CATCCTTAGGGTATTATG----------------------AAATACTCTAAAATCTGAAAACAAAATTAAAACATTCCTGGTCCCAAGCATTTTG-------TACGCTCAACCTGTAATAAAAATTCTCTA-AACTGACAGCCATCTGCCTTTTGGGATCTTATACATGCAC-----ATAGAAAATATCATGTGGGGGAAAATGGCTTTATATTATGAATCCCATTCAAATGGCAGTTT-GAGTACAGTTCT-----GGTCAGAGGATATTAGGATTGTTAAGAGAATTACACCTTCTGAGGCGAAAAGCTTACTTTGTATTAAAAG
s HiC_scaffold_1 93767878 659 + 233722169 CCGAAAAATTCTA---TCAAGTAGGACCCAGTGAGGTTTCTTGGGCTTTCATGAAAGT------------------TATTACTG---CCCATATAAAAGAAACTTCCTAGAATCTGATCTCAATACTGTAGTAGCTTTTAGACCTGGCCATAAAAGCTTATTGGTAACTATTGGCTATTATTATAAACTAGCATTGGTTATATTGGTTGAGCATCCCTAATA-------TCC-----AACCCAA----TATTCTATGTGATGCACAGATCTGATGCCTCAAGTGGAAAATCCACATCTGACCCATGGCAGGTCTAattcaaaa------acactaaaaatgttgCATTGCATAAATGAACTCAAGactatacaaa--acaaatgaacTTTGGATTTAGACTTGGGTCTCATCCTCAAGGTATCTTGTATTATggtattatgtatatgcaaatattccaaaatctgaaaac--acCTAAAATATTGCTGATTCCAGGCATTTAAGAGAAGTGATAGTCAAC---------AAATTCTCTATAACTGAC-----TTAGTTATTTGTGACTCTGTAGCTCTATTCTGAAATGAAAACGTCCTATGGAAAAAAATGACTTTACACTATAAACTCTATTCAAATACTGGCTTAAAATGGGGTCCTTGCTGGGTGTGGTAATCTTaggacttggaagg------------ctgaggccggAAAATCactctaagttcaagg

a score=4771
s chr3            97963575 151 + 160039680 TTCTCTTCCTTTCATAAAGTCACCAAGAGTCAGCCCT-----GGCGGCTCTAT-------CTGTCTAATTTTAATCCTCCCCAAAAGTCCCACCTCTAAAGTCCATAGTGGGATTAAGTTTCTTCAGCCTTAATACATCACAACGGGGTTTA-ATTTCAACACA
s HiC_scaffold_1 119822262 164 + 233722169 TTCTCTCCTTCTAATACAGACGCCTGTATTCAGTCATCACAGGGGGTTTCTATGATGGCCTTATCTAATCATAGTAACCCCCAAAAGTCCCTCCTCTAAACACCATTGTCAGATTACATTCCCACCCTCTTAATACCTCACAAGGGAAATTATATTTTGACATA

a score=8797
s chr3           98066030 310 + 160039680 TTTGTTTGTTTCCATTTTATTTGATGTTTCCAAACGTAAAAAAGAAAGTCAAGATTCTTACAATTCTTACAACAGTTCGAATACAACCCTCTCAGATGAGACCATGCAAAGCAATTC-TTGTACACATACCCT--TTTCTCTCCTTCACCTTTGCTGCTTCATAC---GGTGTGACTGACA----ACTGGATGGCTTGTCCTTGGTGGGAAAATGCCATTTCTTTACACCACCACCC----AACAATTTCTACTTT-TCTGCAAGTCAATTTTTAACAAGTTACTTTGCTGTTTTCTTTTAAACATTAGGAGGCACATGGAACTG
s HiC_scaffold_1 14604105 281 + 233722169 TTtttatgttctcatttt------tattttcaaatataaaaa-----gtaaagatttttatACTAATTA--------------------TCTCAATCGGGTATATGCAAAGCTATTCAGTGATTACA-ACCCTCATTTCTCCCTTTTAGTTTTTCTGCTTTATACAGTGGTGTGACTTACAGAACACTGGATGGCATGTGCTTGGTTGGAAAATGTCATCTCTTTACAAAACAACGTGCAGGGCAGTTCTTACTTTGTCTGCAAGTCAGTTTacaataactt------cttttttttgt------ttaagaGGCACATGGAACTG

a score=8104
s chr3            98072579 375 + 160039680 CCTTTAGGGAAGCAGTGTCAGTGGACAGATGCCTGTCTATCTCATCCCTGCGAAAATGGAAGCACCTGT---ACATCTGTGGCCAGCCAGTTCTCCTGCAAATGCCCTGCAGGCCTCACAGGGCAGAAGTGTGAAGCTGATATCAATGAGTGTGAC---ATTCCAGGACGCTGCCAACATGGTGGCACCTGCCTCAACCTTCCTGGTTCCTACAGATGCCAATGTCCTCAGGGCTTCACAGGCCAGCACTGTGACAGCCCTTATGTGCCCTGTGCACCCTCGCCCTGCGTCAACGGAGGCACCTGTCGTCAGACTGGCGACTTCACTTTCGAATGCAACTGCCTGCCAGGTGAGGAGCTCTCTCTTGGCTATGGGAGTGGG
s HiC_scaffold_1 194635752 377 + 233722169 CCCCCAGGGAAGTCGTGCCAGCAGGCTGACCCATGTGCCTCCAACCCCTGTGCCAATGGTGGCCACTGCTTGCCCTTTGAGTCCACCTA---CATCTGCGGCTGCCGACCGGGCTTCCATGGCTCCACCTGCCGGCAGGATGTGAATGAGTGCAGCCAGACACCCGGGCTGTGCCGGAACGGGGGCACCTGCCACAATGAGGTGGGCTCCTACCGCTGCGCCTGCCGCCCCACGCACATGGGCAGCAACTGTGAGCTGCCCTATGTGCCCTGCAGCCCCTCGCCCTGCCAGAACGGGGGCACCTGCCGCCCCACAGGGGAGACCACCCATGaatgtgcctgcctgccaggt-AGGTCAGCCCCAGTGGCCACGGGAGTGGG

a score=5472
s chr3            98081903 141 + 160039680 CTTCTTTGATCAGGTTTTGAAGGGAGCACCTGTGAGCGGAATATCGACGACTGCCCCAACCACAAGTGTCAGAATGGAGGAGTTTGTGTGGATGGTGTCAATACCTACAATTGCCGCTGTCCCCCTCAGTGGACTGGTAGG
s HiC_scaffold_1 194638019 140 + 233722169 CCCCTTTGG-CAGGCTTCACTGGCCAGAACTGCGAGGACAATGTGGATGACTGCCCGGGAAATAGCTGCAGGAATGGGGGCGCCTGTGTGGATGGCGTGAACACCTACAACTGCCGCTGCCCTCCAGAGTGGACAGGTGAG

a score=13065
s chr3            98098087 248 + 160039680 CCCCACAGGGCAGTTCTGCACAGAAGATGTGGACGAGTGTCTGTTGCAGCCCAACGCTTGTCAGAATGGAGGCACCTGCACCAACCGAAACGGAGGCTATGGCTGCGTGTGTGTGAACGGCTGGAGCGGAGATGACTGCAGCGAGAATATCGATGACTGTGCCTATGCTTCCTGCACGCCAGGGTCCACCTGCATTGACCGCGTGGCCTCCTTCTCCTGCCTGTGTCCGGAGGGAAAGGCGGGTAAGA
s HiC_scaffold_1 194638730 248 + 233722169 CCCCACAGGTCAGTTCTGCACAGAGGATGTGGACGAGTGTCAGCTCATGCCCAATGCCTGCCAAAACGGTGGCACCTGCCACAACACCCAGGGCGGCTACAACTGCGTGTGTGTCAATGGCTGGACGGGTGAAGACTGCAGCGAGAACATTGACGACTGTGCCAGCGCTGCCTGCTTCAATGGGGCCACCTGCCATGACCGTGTGGCCTCCTTCTACTGCGAGTGTCCCCACGGCCGCACGGGTGAGA

a score=7917
s chr3            98099420 165 + 160039680 CAGGTCTCCTGTGCCATCTGGATGATGCCTGTATCAGCAACCCTTGTCACAAGGGGGCGCTGTGTGACACCAACCCCCTGAACGGGCAGTACATTTGCACCTGCCCACAGGGCTACAAGGGCGCTGACTGCACAGAAGACGTGGATGAGTGTGCTATGGGTGAGT
s HiC_scaffold_1 194639094 165 + 233722169 caggcctgctGTGCCACTTGAATGACGCCTGCATCAGCAACCCCTGCAACGAGGGCTCCAATTGTGACACCAACCCTGTCAACGGCAAGGCCATCTGCACCTGCCCCTCAGGGTACACTGGCCCAGCCTGCAGCCAGGACGTGGATGAATGTGCACTGGGTAGGT

a score=9561
s chr3            98100198 219 + 160039680 GCCAACAG----TAACCCTTGTGAGCATGCAGGAAAGTGTGTGAATACAGATGGCGCCTTCCACTGTGAGTGTCTGAAGGGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCCTGGATAAGATCGGAGGCTTCACCTGTCTGTGCATGCCAGGTAAGGAGGGCTGGTCAGCTGCTGACAGG
s HiC_scaffold_1 194639347 223 + 233722169 GCCTACAGGTGCCAACCCCTGTGAGCACGCGGGCAAGTGCATCAACACCCTGGGCTCCTTCGAGTGCCAGTGTCTGCAGGGCTACAGCGGCCCCCGCTGCGAGATCGATGTCAATGAGTGCATCTCCAACCCATGTCAGAACGATGCCACCTGCCTGGACCAGATCGGCGAGTTCCAGTGCATCTGCATGCCTGGTGAGGCGGTGGGGTCATGTGGGGGCAGG

a score=4955
s chr3            98100208 187 + 160039680 ACCCTTGTGAGCATGCAGGAAAGTGTGTGAATACAGATGGCGCCTTCCACTGTGAGTGTCTGAAGGGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCCTGGATAAGATCGGAGGCTTCACCTGTCTGTGCATGCCAGGTAAGGA
s HiC_scaffold_1 194646373 177 + 233722169 ACCTGTGCCAGCATGGAGGACTCTGCGTGGACGCAGGCAACACCCACCACTGCCGCTGCCAGGCTGGCTACACGGGCAGCTACTGCGAGGAGGAGGTGGACGAGTGTTCACCCAGCCCCTGCCAGAATGGGGCCACCTGTACAGACTACCTGGGTGGCTACTCT----------TGCAAGGTGAGGA

a score=3851
s chr3            98100251 98 + 160039680 CTTCCACTGTGAGTGTCTGAAGGGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCC
s HiC_scaffold_1 183249843 98 + 233722169 CTTCCAATGCTACTGCGTGCCGGGTTTCCAGGGTCCCCACTGTGAGCTGGACATCGATGAGTGTGCGTCCAGGCCCTGCCACCATGGGGCCACCTGCC

a score=3876
s chr3            98100252 139 + 160039680 TTCCACTGTGAGTGTCTG---AAGGGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCCTGGATAAGATCGGAGGCTTCACCTGTCTGTGCATGCCAGGTA
s HiC_scaffold_1 183252284 142 + 233722169 TTCCGGTGTGACTGCGCGGGCACGGGCTACGAGGGCGCGCGCTGCGAGCTAGAGGTGCTGGAGTGTGCGTCTGCGCCCTGCGCGCACAATGCCACCTGCCTCGAAGGCCTAGGGAGTTTCCGCTGCCTCTGCTGGCCAGGTA

a score=4282
s chr3            98100258 159 + 160039680 TGTGAGTGTCTGAAGGGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCCTGGATAAGATCGGAGGCTTCACCTGTCTGTGCATGCCAGGTAAGGAGGGCTGGTCAGCTGCTGACAGG
s HiC_scaffold_1 194642038 148 + 233722169 TGTGACTGTGACTCGGGCTGGAGCGGGACAAACTGTGACATCAACAACAACGAGTGTGAGTCAAACCCTTGTGTCAACGGCGGCACCTGCAGGGATATGACCAGCGGCTAC----GTGTGCACGTGCC-----GGGAGGGCT--TCAGCGGTGAGCAGG

a score=5051
s chr3            98100273 116 + 160039680 GGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCCTGGATAAGATCGGAGGCTTCACCTGTCTGTGCATGCCAGG
s HiC_scaffold_1 194640768 113 + 233722169 GGCTACACGGGGATACACTGCGAGGTGGACATCAACGAGTGTGACCCTGACCCCTGCCATTACGGCT---CCTGCAAGGATGGCGTTGCTGCCTTCACCTGCCTCTGTCAGCCAGG

a score=4884
s chr3            98101508 153 + 160039680 CCATTTGTGCAGGTTTCAAAGGTGTGCATTGTGAGCTGGAGGTAAATGAATGCCAGAGCAACCCGTGTGTGAACAACGGGCAGTGTGTGGACAAAGTCAACCGCTTCCAGTGTCTGTGTCCCCCTGGTAAGCGCCTGCCACCTGCCCCTGTGC
s HiC_scaffold_1 194639759 149 + 233722169 CTGTCTCCGCAGGCTATGAGGGGTTGTACTGTGAGGTCAACACAGACGAGTGTGCCAGCAGCCCCTGCCTGCATAACGGGCGCTGCCTGGACAGAGTCAGCGAGTTCCTGTGCGAGTGTCCCACTGGTGAG----TCCAGCCTGGCCCTGCGC

a score=6031
s chr3            98104345 239 + 160039680 CAGGTTTCACTGGCATATTGTGTGATGAGAACATCGACAACTGTGACCCAGATCCTTGCCACCATGGCCAGTGCCAGGATGGGATCGACTCCTACACCTGCATCTGCAACCCTGGGTACATGGGAGCCATCTGTAGTGACCAGATTGATGAATGCTACAGCAGCCCTTGCTTGAACGATGGGCGCTGCATTGACCTGGTGAATGGTTACCAGTGCAACTGCCAACCAGGCACATCAGGT
s HiC_scaffold_1 194640766 239 + 233722169 CAGGCTACACGGGGATACACTGCGAGGTGGACATCAACGAGTGTGACCCTGACCCCTGCCATTACGGCTCCTGCAAGGATGGCGTTGCTGCCTTCACCTGCCTCTGTCAGCCAGGCTACACCGGCCACCACTGTGAGACCAACATCAACGAGTGCGCCAGCCAGCCCTGCCGCCATGGGGGCACCTGCCAAGACCGCGACAATGCCTACCTATGCCTCTGCCTCAAGGGGACCACAGGT

a score=3869
s chr3            98107043 118 + 160039680 CAGGCCTTAATTGTGAAATTAATTTTGATGACTGTGCCAGCAACCCTTGT-ATGCACGGAGTCTGTGTGGACGGCATCAATCGCTACAGCTGTGTGTGCTCTCCGGGATTCACAGGTAA
s HiC_scaffold_1 194641087 118 + 233722169 CAGGGCCCAACTGTGAGATCAACCTGGACGACTGCGCCAGCAGCCCCTGTGACGCG-GGTACCTGTCTGGACAAGATTGACGGCTATGAGTGCGCCTGTGAGCCAGGCTACACGGGTGA

a score=3607
s chr3            98111528 120 + 160039680 TGGCCCCTGACCCCTCTACAGGCCAGAGGTGCAATATTGACATTGATGAGTGTGCCTCCAACCCCTGTCGCAAGGGTGCGACGTGCATCAATGATGTGAATGGTTTCCGGTGTATATGCC
s HiC_scaffold_1 194642266 120 + 233722169 TGACCACCCTCCACTCTCTAGGCCCCAACTGCCAGACCAACATCAACGAGTGTGCATCTAACCCGTGTCTGAACCAGGGCACGTGCATTGACGACGTGGCCGGGTACAAGTGCAACTGCC

a score=7110
s chr3            98111532 216 + 160039680 CCCTGACCCCTCTACAGGCCAGAGGTGCAATATTGACATTGATGAGTGTGCCTCCAACCCCTGTCGCAAGGGTGCGACGTGCATCAATGATGTGAATGGTTTCCGGTGTATATGCCCCGAGGGACCGCATCATCCTAGCTGCTACTCACAGGTGAACGAGTGCCTGAGCAATCCCTGCATCCACGGAAACTGTACTGGAGGTCTCAGTGGGTGAGT
s HiC_scaffold_1 194641497 216 + 233722169 CCCGGCCCTCCTCACAGGCAGCATGTGCAATATCAACATCGACGAGTGTGCGGGGAGCCCCTGCCACAATGGGGGCACCTGCGAGGACGGCATCAACAGCTTCACCTGCCGCTGCCCCGAGGGCTACCATGACCCCACTTGCTTGTCTGAGGTCAATGAGTGCAGCAGCAACCCCTGCATACACGGGAGCTGCCAGGACAGCCTCAACGGGTAGGT

a score=3947
s chr3            98111566 89 + 160039680 GACATTGATGAGTGTGCCTCCAACCCCTGTCGCAAGGGTGCGACGTGCATCAATGATGTGAATGGTTTCCGGTGTATATGCCCCGAGGG
s HiC_scaffold_1 194645158 89 + 233722169 GACATCAACGAGTGTGCCAGCAGCCCCTGCCGCAACGGTGCCAACTGCACTGACTGTGTGGATAGCTACACGTGCACCTGCCCTGCGGG

a score=3744
s chr3            98113040 116 + 160039680 GGTGTCAACTGTGAGGTGGACAAAAATGAGTGTCTTTCTAACCCATGCCAGAATGGAGGAACGTGCAATAACCTGGTGAATGGCTACAGGTGTACCTGCAAGAAGGGGTTCAAAGG
s HiC_scaffold_1 194645140 116 + 233722169 GGCGCCTTCTGCGAGGAGGACATCAACGAGTGTGCCAGCAGCCCCTGCCGCAACGGTGCCAACTGCACTGACTGTGTGGATAGCTACACGTGCACCTGCCCTGCGGGCTTCAACGG

a score=7172
s chr3            98115218 140 + 160039680 CCTCCTC-CTCCAGGCTACAACTGCCAGGTGAATATAGATGAGTGTGCCTCCAACCCGTGTCTGAACCAAGGAACCTGCTTTGATGACGTCAGTGGCTACACTTGCCACTGCATGTTGCCTTACACAGGTG-GGTACTGCAG
s HiC_scaffold_1 194642273 142 + 233722169 CCTCCACTCTCTAGGCCCCAACTGCCAGACCAACATCAACGAGTGTGCATCTAACCCGTGTCTGAACCAGGGCACGTGCATTGACGACGTGGCCGGGTACAAGTGCAACTGCCTGCTGCCCTACACAGGTGCGGTCCAGCAG

a score=10445
s chr3            98120683 323 + 160039680 CAGTGCTGCTGTCCTGAGTCCCACT-TCTTTTGTCCTGTCTCAGACCCCTGCCAGAACGGAGGCTCCTGTGTGGACCATGTGAATACCTTCTCCTGCCAGTGCCATCCTGGCTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGGCTTCCACGGAGTCCACTGTGAAAACAACATTGACGAGTGCACTGAGAGGTGAGCAGGGTGGGCCTGGGCACCAGTAGCTCACAGG-ACGGGGAGGCAGGG
s HiC_scaffold_1 194645027 307 + 233722169 CAGTGC--CCACCATCAGTCTCGCCCTCCTGTTTCC---CTCAGACCCCTGTCACAATGGGGGCTCCTGCACGGATGGCGTCAACACGGCCTTTTGCGACTGCCTGCCCGGCTTCCAGGGCGCCTTCTGCGAGGAGGACATCAACGAGTGTGCCAGCAGCCCCTGCCGCAACGGTGCCAACTGCACTGACTGTGTGGATAGCTACACGTGCACCTGCCCTGCGGGCTTCAACGGCATCCACTGCGAGAACAACACACCTGACTGCACAGAGAGGT-------GCGGGCCCGG------GTAGCATGCAGGTACAGGCGGGCACGG

a score=4573
s chr3            98120713 194 + 160039680 TGTCCTGTCTCAGACCCC--TGCCAGAACGGAGGCTCCTGTGTGGACCATGTGAATACCTTCTCCTGCCAGTGCCATCCTGGCTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGTCTGAGCGAGCCCTGTAAGAATGGGGG------GACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGG
s HiC_scaffold_1 194647130 202 + 233722169 TGGCCTCCCGCAGTCCCAAGTGCTTCAATAACGGCACCTGCGTGGACCAGGTGGGTGGCTATACCTGCACCTGCCCGCCTGGCTTTGTAGGCGAGCGGTGCGAGGGTGACGTCAATGAGTGCCTGTCCAACCCTTGCGACGCCCGCGGCACCCAGAACTGCGTGCAACGTGTCAACGACTTCCACTGCGAGTGCCGGGCGGG

a score=5580
s chr3            98120716 209 + 160039680 CCTGTCTCAGACCCCTGCCAGAACGGAGGCTCCTGTGTGGACCATGTGAATACCTTCTCCTGCCAGTGCCATCCTGGCTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGT---CTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGGCTTCCACGGAGTCCACTG
s HiC_scaffold_1 194645385 209 + 233722169 CCCATCTCCAGCTCCTGCTTCAATGGCGGCACCTGCGTGGATGGCATCAATTCTTTCACCTGCTTGTGTCCACCCGGCTTCACGGGCAGCTACTGTCAGCACGATATCAACGAATGTGACTCGAG---GCCCTGCCTGAATGGCGGCACCTGCCAAGACAGCTATGGCACCTACAAGTGCACCTGCCCACAGGGCTACACTGGCCTCAACTG

a score=4202
s chr3            98120767 149 + 160039680 ACCTTCTCCTGCCAGTGCCATCCTGGCTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGGCTTCCACGG
s HiC_scaffold_1 194646758 149 + 233722169 ACCCTGTTCCCACAGTGTGTGGCTGGCTACCATGGGACCAACTGTTCCGAGGAGACCAATGAGTGCCTGTCCCAGCCCTGCCAGAATGGGGGCACCTGTATCGACCTCACCAACACTTACAAGTGTTCCTGCCCTCGGGGCACACAAGG

a score=4589
s chr3            98120793 122 + 160039680 CTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGGCTTCCACG
s HiC_scaffold_1 194641506 122 + 233722169 CCTCACAGGCAGCATGTGCAATATCAACATCGACGAGTGTGCGGGGAGCCCCTGCCACAATGGGGGCACCTGCGAGGACGGCATCAACAGCTTCACCTGCCGCTGCCCCGAGGGCTACCATG

a score=9873
s chr3            98121896 217 + 160039680 TCCTCAGCTCCTGCTTCAATGGCGGCACGTGTGTTGATGGAATCAACTCTTTCTCTTGCTTGTGCCCCGTGGGTTTCACTGGTCCCTTCTGCCTCCATGATATCAATGAGTGCAGCTCTAACCCGTGCCTGAATGCTGGAACGTGTGTTGATGGTCTGGGTACCTACCGATGCATCTGTCCCTTGGGCTACACCGGGAAAAACTGTCAGGTAATCAG
s HiC_scaffold_1 194645389 217 + 233722169 TCTCCAGCTCCTGCTTCAATGGCGGCACCTGCGTGGATGGCATCAATTCTTTCACCTGCTTGTGTCCACCCGGCTTCACGGGCAGCTACTGTCAGCACGATATCAACGAATGTGACTCGAGGCCCTGCCTGAATGGCGGCACCTGCCAAGACAGCTATGGCACCTACAAGTGCACCTGCCCACAGGGCTACACTGGCCTCAACTGCCAGGTGAGCAG

a score=5059
s chr3            98121901 123 + 160039680 AGCTCCTGCTTCAATGGCGGCACGTGTGTTGATGGAATCAACTCTTTCTCTTGCTTGTGCCCCGTGGGTTTCACTGGTCCCTTCTGCCTCCATGATATCAATGAGTGCAGCTCTAACCCGTGC
s HiC_scaffold_1 194641552 123 + 233722169 AGCCCCTGCCACAATGGGGGCACCTGCGAGGACGGCATCAACAGCTTCACCTGCCGCTGCCCCGAGGGCTACCATGACCCCACTTGCTTGTCTGAGGTCAATGAGTGCAGCAGCAACCCCTGC

a score=9543
s chr3            98124072 288 + 160039680 CCAGGCTCACTTGCTTTTGGGTTGAACC--TGCCGTGGGCCGCACTCTCTGATGCTTCTCTCTCCACCTGGTGCCCAGGAGTACCTGTTGAACACTTGTGCCAGCACTCGGGCATCTGTATCAATGCTGGCAACACCCATCACTGCCAGTGCCCCCTGGGCTACACGGGGAGCTACTGCGAGGAGCAGCTTGATGAGTGTGCATCCAATCCATGCCAGCACGGTGCCACCTGCAATGACTTCATCGGAGGATACAGATGTGAGGTGAGGAGATGGCTTAGCCCAGAGGGC
s HiC_scaffold_1 194646299 270 + 233722169 CCAGGCCGAGTTG-----GGGCTGAGCCAGGGCCCTGGGTCTCACCTTC-----CTCCTCTCT---------GTGCAGACATCGATGTCGCCTACCTGTGCCAGCATGGAGGACTCTGCGTGGACGCAGGCAACACCCACCACTGCCGCTGCCAGGCTGGCTACACGGGCAGCTACTGCGAGGAGGAGGTGGACGAGTGTTCACCCAGCCCCTGCCAGAATGGGGCCACCTGTACAGACTACCTGGGTGGCTACTCTTGCAAGGTGAGGA-ATGTCCTGGCACAGTAGGC

a score=5182
s chr3            98124141 204 + 160039680 TGCCCAGGAGTACCTGTTGAACACTTGTGCCAGCACTCGGGCATCTGTATCAATGCTGGCAACACCCATCACTGCCAGTGCCCCCTGGGCTACACGGGGAGCTACTGCGAGGAGCAGCTTGATGAGTGTGCATCCAATCCATGCCAGCACGGTGCCACCTGCAATGACTTCATCGGAGGATACAG----------ATGTGAGGTGAGGAGATGG
s HiC_scaffold_1 194639346 207 + 233722169 TGCCTACAGGTGCC-----AACCCCTGTG--AGCACGCGGGCAAGTGCATCAACACCCTGGGCTCCTTCGAGTGCCAGTGTCTGCAGGGCTACAGCGGCCCCCGCTGCGAGATCGATGTCAATGAGTGCATCTCCAACCCATGTCAGAACGATGCCACCTGCCTGGACCAGATCGGCGAGTTCCAGTGCATCTGCATGCCTGGTGAGGCGGTGG

a score=3714
s chr3            98124180 129 + 160039680 GGCATCTGTATCAATGCTGGCAACACCCATCACTGCCAGTGCCCCCTGGGCTACACGGGGAGCTACTGCGAGGAGCAGCTTGATGAGTGTGCATCCAATCCATGCCAGCACGGTGCCACCTGCAATGAC
s HiC_scaffold_1 194645412 129 + 233722169 GGCACCTGCGTGGATGGCATCAATTCTTTCACCTGCTTGTGTCCACCCGGCTTCACGGGCAGCTACTGTCAGCACGATATCAACGAATGTGACTCGAGGCCCTGCCTGAATGGCGGCACCTGCCAAGAC

a score=4049
s chr3            98124200 111 + 160039680 CAACACCCATCACTGCCAGTGCCCCCTGGGCTACACGGGGAGCTACTGCGAGGAGCAGCTTGATGAGTGTGCATCCAATCCATGCCAGCACGGTGCCACCTGCAATGACTT
s HiC_scaffold_1 183249837 111 + 233722169 CAACAGCTTCCAATGCTACTGCGTGCCGGGTTTCCAGGGTCCCCACTGTGAGCTGGACATCGATGAGTGTGCGTCCAGGCCCTGCCACCATGGGGCCACCTGCCACAACCT

a score=6442
s chr3            98126099 151 + 160039680 CTATCCTGACAGTGTGTTCCAGGATATCAGGGTGTCAACTGTGAGTATGAAGTGGACGAGTGCCAGAACCAACCCTGCCAGAATGGAGGCACCTGCATCGACCTTGTGAACCATTTCAAGTGTTCGTGTCCCCCAGGCACCCGGGGTATGC
s HiC_scaffold_1 194646761 151 + 233722169 CTGTTCCCACAGTGTGTGGCTGGCTACCATGGGACCAACTGTTCCGAGGAGACCAATGAGTGCCTGTCCCAGCCCTGCCAGAATGGGGGCACCTGTATCGACCTCACCAACACTTACAAGTGTTCCTGCCCTCGGGGCACACAAGGTGAGC

a score=8228
s chr3            98131236 184 + 160039680 GCCCCCACTGCCTTAACGGTGGCCAGTGCGTGGACCGGATTGGAGGCTACACTTGTCGCTGTTTGCCTGGCTTTGCTGGGGAGCGGTGTGAGGGGGACATCAACGAATGCCTGTCCAACCCTTGCAGCTCAGAGGGCAGCCTGGACTGCGTTCAGCTCAAAAATAACTACAACTGTATCTGCCG
s HiC_scaffold_1 194647142 184 + 233722169 GTCCCAAGTGCTTCAATAACGGCACCTGCGTGGACCAGGTGGGTGGCTATACCTGCACCTGCCCGCCTGGCTTTGTAGGCGAGCGGTGCGAGGGTGACGTCAATGAGTGCCTGTCCAACCCTTGCGACGCCCGCGGCACCCAGAACTGCGTGCAACGTGTCAACGACTTCCACTGCGAGTGCCG

a score=4728
s chr3            98134549 129 + 160039680 TCTCCTAAGGCCGGCACTGTGAAACCTTCCTAGATGTGTGTCCCCAGAAGCCTTGCCTGAACGGAGGGACTTGTGCCGTGGCTAGCAACATGCCCGATGGCTTCATCTGTCGTTGTCCCCCAGTAAGTG
s HiC_scaffold_1 194647410 129 + 233722169 TCCCCCCAGGTCGCCGCTGTGAGTCGGTCATCGATGGCTGCAAGGGCAAGCCCTGCAGGAATGGGGGTGTTTGTGCCGTGGCCACCAACACTGCCCGTGGCTTCATCTGCAGGTGCCCTGCGGTAGGTG

a score=10332
s chr3            98137274 285 + 160039680 GTATGACAAATACTGTGCAGACCACTTCAAAGACAACCACTGTGATCAGGGATGCAACAGCGAGGAGTGTGGCTGGGATGGGCTGGACTGCGCTTCGGACCAGCCTGAGAACCTGGCAGAGGGCACCCTGATCATCGTGGTGCTCCTGCCCCCTGAACAGCTGCTGCAGGATTCGCGAAGCTTCTTGAGGGCCCTGGGCACCCTGCTCCACACCAACTTGCGCATTAAACAAGATTCTCAGGGCGCTCTCATGGTGTACCCCTACTTTGG----GGAGAAGTCAGCTGC
s HiC_scaffold_1 194648843 287 + 233722169 GTATGACCAGTACTGCAAGGACCACTTCAGCGACGGGCACTGTGACCAGGGCTGCAACAGCGCCGAGTGCGAGTGGGATGGGCTGGACTGCGCGGAGCATGTGCCCGAGCGGCTGGCGGCCGGCacactggtggtggtggtgctgctgcCCCCCGAGCAGCTGCGTAACAACTCCTTCCACTTCCTGCGTGAGCTCAGCCGTGTACTGCACACCAATGTGGTCTTCAAGCGCGATGCACAGGGCCAGCAGATGATCTTTCCCTACTATGGCCGCGAGGAAG--AGCTGC

a score=12688
s chr3            98142881 316 + 160039680 CCTCCCTACAGATGGGTGTACTCCACTGATGCTGGCTTCTCTCCGAGGAGGCAGCTCAGACCTGAGTGATGAAGACGAAGATGCTGAGGACTCTTCTGCCAACATCATCACAGACTTGGTCTACCAAGGTGCCAGCCTTCAAGCACAGACAGACCGCACTGGCGAGATGGCCCTGCACCTTGCAGCCCGCTATTCGAGAGCTGATGCTGCCAAACGCCTCCTGGATGCTGGTGCGGATGCAAATGCCCAGGACAACATGGGCCGATGTCCTCTTCACGCTGCGGTGGCAGCAGACGCCCAAGGTGTCTTTCAGGTA
s HiC_scaffold_1 194651922 310 + 233722169 CTCCCATGCAGATGGCTTCACCCCGCTCATGATCGCCTCCTGCAGCGGTGGGGGCCTGGA---GACAGGCAACAGCGAGGAGGAAGAGGACGCGCCAGCCG---TGATCTCAGACTTCATTTACCAGGGTGCCAGCTTGCACAACCAGACCGACCGCACTGGCGAGACAGCCTTGCACCTGGCCGCCCGCTACTCACGCTCCGACGCTGCCAAGCGCTTGCTGGAAGCCAGCGCAGATGCCAACATCCAGGACAATATGGGACGCACCCCGCTACATGCGGCTGTGTCTGCCGATGCTCAGGGTGTCTTCCAGGTA

a score=9116
s chr3            98144357 186 + 160039680 CTAGATTCTGATCCGCAACCGTGTAACCGATCTGGATGCCAGAATGAACGATGGTACTACCCCCCTGATCCTGGCTGCCCGCCTGGCTGTGGAAGGAATGGTGGCAGAGTTGATCAATTGCCAAGCAGATGTCAATGCAGTGGATGACCATGGTAGGGACAAGGATGTGGCTCCATCTGCAGAGAG
s HiC_scaffold_1 194653187 179 + 233722169 CCAGATCCTGATCCGGAACCGAGCCACTGACCTGGATGCCCGCATGCACGATGGCACTACGCCGTTGATCCTGGCGGCCCGCCTGGCCGTGGAGGGCATGTTGGAGGATCTCATCAACTCACATGCCGATGTCAATGCCGTGGATGACCTGGGTAGGTGGGAAG-------CCCTGCTGCAGGGAG

a score=5947
s chr3            98145114 107 + 160039680 CCTGCAGGAAAATCTGCCCTCCACTGGGCAGCTGCTGTCAATAATGTGGAGGCGACTCTTCTGCTGTTGAAGAATGGGGCCAACAGAGATATGCAGGACAATAAGGT
s HiC_scaffold_1 194653409 107 + 233722169 CCCACAGGTAAGTCGGCTCTGCACTGGGCTGCCGCCGTGAACAACGTGGATGCCGCACTGGTGCTGCTGAAGAACGGGGCCAACAAGGACATGCAGAATAACAAGGT

a score=18555
s chr3            98146045 1311 + 160039680 TCTTCAGGAAGAGACACCTTTGTTTCTTGCTGCCCGAGAGGGAAGTTATGAAGCGGCCAAAATCCTGTTAGACCATTTTGCCAACCGGGACATCACTGACCACATGGACCGCCTTCCCCGGGATGTGGCTCGGGACCGCATGCACCATGACATCGTTCGCCTCCTGGACGAGTATAACGTGACTCCCAGCCCTCCG----GGAACG--GTCTTG------ACTTCTGCGCTCTCACCTGTCCTCTGTGGGCCCAACAGGTCTTTCCTCAGTCTGAAGCACACCCCAATGGGTAAGAAGGCTAGGCGGCCCAACACCAAGAGCACCATGCCCACGAGCCTGCCTAACCTTGCCAAGGAGGCCAAGGATGCCAAGGGCAGCA-GGAGGAAGAAGTGTCTGAACGAGAAGGTCCAGCTGTCCGAGAGCTCAGTGACTCTATCCCCCGTCGATTCGCTCGAGTCTCCTCACACGTATGTCTCCGATGCCACATCCTCTCCCATGATCACATCCCCTGGAATCTTACAGGCCTCGCCCACCCCCCTGCTGGCTGCTGCCGCCCCGGCTGCCCCAGTGCACACAC-AGCATGCGCTGTCTTTCTCTAACCTTC---------ATGACA------------TGCAGCC-TTTGGCTCCTGGAGCCAG---CACCGTGCTCCCCTCGGTCAGCCAGCTG-CTATCCCACCACCAC-ATCGCGCCCCCAGGTAGTAGCAGTGCAGGAAGCT------TGGGCA--------GGTT---ACATCCAGTTC------CTGTCCCA---GCAGACTGG-----------------ATGAACCG-TGTGGAGATGAACGAGACCCAGTACAGTGA-------------AATGTT------TGGCATGGTCCTGGCTC-CTGCAGAGGGAGCC---------CACCCTGGCATAGC-----AGCTCCCCAGAGCAGACCTCCG---GAAGGGAAGCACATGTCCACCCAGCGGGAGCCC-----TTGCCTC-------CCATCGTGACTTTCCAGCTTATCCCAAAAG---GCAGCATTGCCCAGGCAGCCGGAGCTCCCCAGA---CGCAG-TCCAGTTGCCCTC----CAGC-------TGTTGCAGGCCCCTTGCCCTCTATGTACCAGATCC------------------------------CAGAGATGCC-CCGTTTGCCCAGTGTGGCTTTCCC--ACCTACCATGATGCCCCAGCAGGAGGGGCAGG--TAGCTCAGACCATTGTGCCAACCT-ATCATCCTTTCCCA--GCCTCTGTGGGCAAGTACCCCACACCCCCTTCCCAACACAGTTACGCCTCCTCAAATGCTGCTGAGCGA-ACCCCCAGTCATGGTGGTCACCTCCAGGG---CGAGCACCCATACCTGACACCATCCCCAGAGTCTCCTGACCAATGGTCAAGCTCTTCACCACACTCT-GCATCT--GACTGGTCAGATGTGACCACCAGCCC
s HiC_scaffold_1 194654521 1459 + 233722169 TCCCCAGGAGGAGACACCTTTGTTCTTGGCTGCCCGGGAGGGCAGCTACGAGACCGCCAAGGTGCTGCTGGACCACTTTGCCAACCGGGACATCACCGACCACATGGACCGCCTGCCGCGGGACATTGCCCAGGAGCGCATGCACCATGACATTGTGCGGCTGCTGGACGAGTACAACCTGGTGCGCAGCCCGCAGCTGCACAACGCTGCCCTGGGCAGCACACCCACCCTGTCGCCCACGCTCTGCTCACCCAACGGCTACCTGGGCAACCTCAAGCCTGCCATGCAGGGCAAGAAGGCCCGCAAGCCTAGCACCAAGGGC----------CTGGCCTGCGGCA-----GCAAGGAGGCCAAAGACCTCAAG----GCACGGAGGAAGAAGTCGCAGGATGGCAAGGGCTGCCTGCTGGACAGTTCGAGCATGCTGTCGCCCGTGGACTCCCTGGAGTCGCCCCATGGCTACTTGTCGGACGTGGCCTCGCCGCCCCTCTTGCCTTCTCC---ATTCCAACCATCTCCATCTTTGCCTCT-----CAGTCACTTGCCTGGAATGCCTGATGCccacctgggcatcaaccatctgAACGTGACAGCCAAGCCCGAGATGGCAGCGCTGGGTGGGGGCAGCCGGCTGGCCTTTTGAGCCCGGGCCACCACG-TCTCTCCCATCTGCCGGTGGCCTCTAGCACCAGCACGGTCCTGGGCGCCAGCAGCAGCGGGGCTGTCAATTTCACCGTGGGCACCGCTGCTGGCCTGAACGGCCAGTGTGACTGGCTGTCCCGGCTGCAGAATGGCATGGTCTCCGGCCAGTACAACCCGCTGCGGGGCGCTGTGGCGCCCGGCACACTGAGCACGCAGGCCCCAACCTTGCAGCATGGCATGAT--GGGCCCACTGCAGAGCGGTCTGTCCACCAACACCCTGTCCCAGATGATGAACTACCAGGGCCTGCCCTCCACACGACTGGCCACCCAGCCCCACCTGGTGCAGGCCCAGCAGGTACCTCAGGTGCAACAGCAAAACTTACAGGTGCAGCCACCAAATCTGCAGCCACCACCAAACATCCAGCAA-CCCCAGAGCCTGCAGCCCCAGCTGCCACCCTCGCAGCCACACCTCGGCGTGGGCTCAGTGGCCAACGGGCACCTGGGCCGAAGCTTCATGGGTGGGGAACCAAGTCAAGCGGATGTGCAGCCGCTGGGCCCCAACAGCCTGACCGTGCACACCATCCTGCCC---CAGGAGGGCCAGAACCTGCCCACATCG--ATGCCATCCTCACTGGTCCCGCCCATGACCACTGC---TCAGTTCCTGACTCCGCCCTCCCAGCACAGCTACTCCTCCTCA----CCAGTGGACAATACCCCCAGCCA------CCAGTTGCAGGTGCCCGAGCACCCCTTCCTCACCCCATCCCCAGAGTCCCCCGACCAGTGGTCCAGCTCATCACCACACTCCAACATCTCCGATTGGTCTGAGGGCATCTCCAGCCC

a score=5196
s chr3           98165685 173 + 160039680 AATGCTCTTGGCTTATAGGCATGAAAGACATTTTTCTAATTGCTTTGTAACTCAGTTGCTGCCAGTTGCAGAAATGTGCCCCAGTCCCTGGACCATTTCTAGCAAACATCATTGATGGTTCAACAAACCCTTTTAATTCAGAGAT-TGTCCATTCTCGACAGTTTTGATTCAAC
s HiC_scaffold_1 53510226 173 + 233722169 AATTCTCTTGGCGTCTCGGTGTAGAGGACATACTTCCAACTGCTCTGTAGCTCTGTTGCTGGTAGCTGTGGAAACTCAGCCCAAGACCTGGTCTCTCTCTGGCTGTTACCAGC-ATGGCTAGATTAACCTTTCTGTTGCAGAGATCCCTTTGGTGTCAAGGGTTGTGGTTTAAC

a score=4139
s chr3           98185050 156 + 160039680 TCCTGCCCAAACATTGTGACATGTTATCCCCAGATTCCCTGACTTGTGGCTGTCTCTTGATTTCAGGTCTCCAAAAAAATTCAGTCTCAAACAATAGCCCCCACCTCAAGGTGGC---TGGCTGTAGCATTCTGACATG-TGAGAGAGCCTGCAGTATTG
s HiC_scaffold_1 93088329 160 + 233722169 TCCTATCCATTCTCTGTGGCAAAGTGTTCCCAGAAACCCTCAAGGGTGATTGTTTTGTGACTTCTGATCCCTGGAGTGACTCAGTCTCAAACAGTAAGCTTCCTTTCAAAATAACTCATAATTGTATCACTCTGAGACACTGGCAAGAactgcaggtttg

a score=6612
s chr3            98220332 584 + 160039680 TCTCATAGTCTCCTGTGCTCTGACAATCCTCTTGTTGTCTGAAGTCTTGGAAC--------AATGGCACAGAGGTCA---GAGCAGGGTCAAGGTAGTCTGGCATGGAGA--AGATCTACGTGCTCACAATATTTTGCAGAAACTTTTCTGTGTTCCTTCTGCATCAGGTCTTTGGACCATGGAAGGCTCCGAGTTGGAATCTGTGTTCTTTCTTGTACAGTGTGGCAGTGACTTTCCCATCCAGTTCTAAAAGGGAAAAGGTGTTGTGT-------------------ATTAAACTAG----GTAAGATCAC-CTAGCAATGCCCT---------------------------------------------------------------CCTTCATATACAGATTAGGGGCCTGTGACTCCAAGGGGTTCAACACATTCCCCGTGCTTTATAGTG-AGAGAGGAACAGAACTCAAACCTCAACCAGCCACTGCCAGGAGCCAGACCACCTGCctctctctctctctctctctctctctctctctctctctctctctcGGGTATGTGGTGTTGGGGGAGGTA---------AGCTGGGAAGACATTGGTTTCTCAGGCCCTAGCATAAATTTACACAAAGGTGGGAAAGATCCAATGACAGAGGCAGAGTAGCATCT-----------AGAAAACAACACTAGGC
s HiC_scaffold_1 125691234 649 + 233722169 TCTCATA----CTTGtgctctt-ctgtcttctc-ttaTCTCAGGTCTCAAAATCTTTATATAGCAGCATGGAGATTACAGGAAGAGGATCAGGGTGGAGGGGGATGTAGACAGGATTTGCCTAATCATA-TATTTTGTGAAAACTTTTGCATCTTACACCTGGGACAGGGTTTTGGAATGTAAAACACTTGTAGTTATTATATTTGCTCTTTATTGTGCTGTGAAACACCTGCTT---------------GAAGAGAAAGGACCTTATGTTGAATACATagtgcataaaataaaattagttcaGTAATACTATGCTTACAGGGCCCtaaattcagtccccagtaccacaagtataacaacaacaacaacaataataataataacatcatGCTTCCACACACAGA------------GGCTCAAAGAGGTACATTACACAGCCAGTGCTCTACAGTTTAGTGAGAAACAAATTTAGAATCTGAACCAAGATCTTTAGGAAGTCAAACC--------------------TGTGCTCTTTC-CTCAAAGCATCATTACAGCAGATAGATGAGGTTctctaaaatatcttttcttaaCTTGAAAG-CTCTGCTTTCTCAGGTGCTATCAGAAACTTATACACAGGTTGGGAAAATCCAATGGCAAAGGCTGAGtagcatttttttaatttaaagaaaaaaacacaaaac

a score=11716
s chr3            98378297 571 + 160039680 GTGCCTTTACTCCCGGTGTTCTCTGTGCAATGGCTACAAAAGCAGCCTTGT-GGTCATGTCTACAACCTCTTGCCGGAATATGGATGGCTGCCCTCAACAGTCTTCCAGACCACCCTTTAAAGGAGGCGTGCAAGTCTCTG-ATCT--CAAGCTGTT--CCCAGGCTGGATGCCAGACAAGTATGACAGGTGGCTCTGGGAAGACCCAGGACATAGTGGCCAAGGTTCATTACTGGCCATGTCATTATGACTGTCACCACCAGGCTGCAAAACAAAGAACATATAA-CAAAGCCGTATGAATGAGCCATAGTTAGATTGTCTGGCCACCACCAGAAGATCCACATCTCAGAGAAACTGAATTTTTACCAAGTTTAATAAAGATAAACTTGATAATATGGTGGTTGACAAGTGACTTATCCCAGTGGCTACAGGATCAAATAAACCCCCAGTTGTCATCCGCTGACCATGTGTAAAACCCTGCATT--TGAGAGACATCTATAGCAACCCTGTCTGTAATAACCCTTCCCACCAGTAAATCCTACTTCTTGTTCACCTAAAGTAACTATAACAAAATGAGA
s HiC_scaffold_1 170573573 552 + 233722169 GCGCCTTTGCT---GGTGTGTGGTGTGCGGTGGCCGCGGCAGCAGCCTCCTCGGTGGAGCACGCAGCTTGTTGCTCGTA---GGA--GCTGCCCCAAGGGACCTTGGAGACCCTGCTTCTGGGG-------CATGTCCCTGTATCTGACCGACTGCCACCCCAATCCAGGCTCCAGACTGGCATGCAGGGTGCCTTTGGGAAGCCCCAGGGCACAGTGGCAAGGGTTCACC-TTGGACAGCTCACCATGTCTATCTTCATGAAGCTGCAGAACAAGGAGCAAGTGATCGAGGCC--CTGGCGGGGCCAAGTTCAGGTTGTCTGG---GCGCCAGAAGACCTACATCTCCGAGAAACAGGG-TTTCACCAAGTTCAGGGCAGACGAATTTGAAGATATGGGGGCCCATAAGCGCTCATTCCTGATGGTTGAGAAGTGAAATACATCCCGAATCACGATCTCCTGGAGGAGTGGTGGGCCTTGCACTCCTGAAAGCTTCCACTACCCCGCCCGTCCTCAGCAA-----GCCATCAATAAATCTTATCTC-tgcccccctcaaaaaaaaaaaagaaaaagaaa

a score=4692
s chr3            98427655 256 + 160039680 GGAGTGGTGGGGATGatgggcatgggtatgggcgtgggcatgg---gcgtggCCGGCGGCTTCGGG--GCGGGGCCCACGCTGGCCCG--GCCCCCTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCG---GCGCCTGCACA
s HiC_scaffold_1 192827425 263 + 233722169 GGAGTTGTGGTCATCCCGTGCAGTGGCCCAGG-GCAGGTGTGGAGCGCGTGG--GAGGGCACCAGGCCGCGCTGACCCCGCTGTGCCGCTGCCCCCAGGTGAGAAGCCGCACAAGTGCCAGGTGTGTGGCAAGGCCTTCAGCCAGAGCTCCAACCTCATCACGCATAGCCGCAAGCACACGGGCTTCAAGCCCTTCACCTGCGACCTCTGTGCCAAGGGCTTCCAGCGCAAGGTAGACCTGCGGCGGCACCGTGAGAGCCAGCACA

a score=7482
s chr3            98427724 614 + 160039680 CCCACGCTGGCCCGGCCCCCTCGCGAAAAGCCC---TTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGC---CCTACC-------------CGTGCCCGGAGTGC-----GGCGAAGCCTTCAGCCT-CAGCTC---------------GCACTTGCTCAGC---------------------------------CAccggcgcgcgcacgcggcggc-------gggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCG---------CATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCG--TGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAA
s HiC_scaffold_1 192826982 671 + 233722169 CCCCCGGGGCCTCGTTTCCTCCGGCAGGAGCGCAGCTTCGAGTGCCGGATGTGCGGCAAAGCCTTCAAACGCTCGTCCACCCTGTCCACCCACCTCCTCATCCACTCGGACACCAGACCCTACCCCTGCCAGTTCTGTGGCAAACGCTTCCACCAAAAGTCAGACATGAAGAAGCACACCTACATCCACACGGGTGAGTGGCTGCCCCGCCGCAGGGCAGGGGACAGGCCCAGGGGCCACAGGGGCGAGGAGGTTGGCCTGCTGCTCTTCGGGTGAGAGGAGGCGCTTGGTCAGCGCTTGTCCACTCTTTGCTGCCTCATCCGCCCCTCGCTGTCACCCGAATCCAGCTCCCTCTATGGGGGTGCTGCGCCAGCC--GTGGGCTCCGTGGGTGCACAGGGGCCTGACTCG-GCGGG----------AGGGGTCCATCTGTCTCCCGCT--------GTCCTCAGGGAGTTGTGGTCATCC-------CGTGCAGTGGCCCAG----GGCAGGTGTGG--AGCGCGTGGGAGGGCACCAGGCCGCGCTGACCCCGCTGTGCCGCTGCCCCCAGGTGAGAAGCCGCACAAGTGCCAGGTGTGTGGCAAGGCCTTCAGCCAGAGCTCCAACCTCATCACGCATAGCCGCAAGCACACGGGCTTCAAGCCCTTCACCTGCGACCTCTGTGCCAAGGGCTTCCAGCGCAA

a score=6457
s chr3           98427743 857 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCT-CAGC-------------CAccggcgcg--------cgcacgcggcg---gcgggcgg-----------cggcgcgggctcggcgggc--tcggcggcggcgctgcgg-------cccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCA---------------------------------------------------------------------------------------------------------------CGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCA-CCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTT
s HiC_scaffold_1 47569332 961 + 233722169 ctggagagaaaccttatgaatGTGATGAATGCGGCAAGGCCTTCAGGAACAGCTCGGGCCTCATAGTGCATAAAAGgattcacacaggagagaaaccttatAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTTGCAGTCCATAAGAGCATTCACCCAGGAAAGAAAGCCCATGAATGCAAAGAGTGTGGCAAATCCTTTAGTTATAACTCTCTCCTCCTTCAACATAAAACTATCCATACTGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACTTTCAGAAACAATTCAGGCCTCAAAGTCCATCGGAGGCTTCACACCGGGGAAAAACCATACCCGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGTATCCATCTAGGGGAAAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCTGCCCTTGAACAACATAAAAGGATTCATACCAGGGAGAAACCTTTTGGGTGTGACGAGTGTGGAAAAGCCTTCAGAAATAATTCAGGCCTTAAAGTACATAAACGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCATATATCTCACT----------------------------------------------------CTCGAGCCTTATAAATCATCCCTTGGGTGCACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGC-CTTCATCACATACCGAACCCTTATAAATCACAAAAAAATTCATCTTGGTGAGAAGCCCTACAAATGTGATGTTTGTGAGAAATCTTTTAATTACACCTCACTTCTTTCTCAACACAAAAGAGTACACACtagagagaaaccctatgaatgtgaTAGATGTGAAAAGGTCTTCAGAAACAACTCAAGCCTT

a score=10866
s chr3            98427743 855 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCG-CACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACC
s HiC_scaffold_1 160468602 814 + 233722169 ctggagaaaagcCATATGAATGTGTTCAATGTGGCAAAGCCCATGGTCATAAACATGCCCTTACTGACCACCtaagaattcatactggggaaAAGCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAAGCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAAC-ATGTGAGAACTCATACAG-----------------------GTGAAAT----------------ACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTTTGGACATAGCTCATCTCTTACTTACCATATGAGAACCCATACTGGTGAAAATCCCTTCGAATGTAATCAGTGTGGGAAGGCCTTTAAACAAATTGAAGGTCTTACTCAACATCAGAGAGTTCATACCGGGGAGAAACCATAtgaatgtaatgaatgtgggaaagcttttagccaAAAGTCACATCTCAttgtacatgaaagaactcacacaggTGAGAAACCATATGAATGCAatgaatgtggaaaagctttcaatGCAAAGTCACAACTCGTTATACATCAGAGATcccacacaggagagaaaccctatgaatgtaatgaatgtgggaaaACCTTCAA--ACAAAATGCATC

a score=8480
s chr3           98427746 753 + 160039680 GCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACC------AACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCA
s HiC_scaffold_1 47569167 714 + 233722169 GTGAGAAGCCCTATGAATGTGATGAGTGTGGAAAGGCCTTCATT------ACTTGCAGGACACTTTTAAATCATAAAAGCATCCACTTTGGAGATAAACCATATAAATGTGATGAGTGTGAGAAATCCTTCAATTATAGCTCTCTCCTTATTCAGCATAAAGTCatccacactggagagaaaccttatgaatGTGATGAATGCGGCAAGGCCTTCAGGAACAGCTCGGGCCTCATAGTGCATAAAAGgattcacacaggagagaa---------------------------------------accttatAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTTGCAGTCCATAAGAGCATTCACCCAGGAAAGAAAGCCCATGAATGCAAAGAGTGTGGCAAATCCTTTAGTTATAACTCTCTCCTCCTTCAACATAAAACTATCCATACTGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACTTTCAGAAACAATTCAGGCCTCAAAGTCCATCGGAGGCTTCACACCGGGGAAAAACCATACCCGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGTATCCATCTAGGGGAAAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCTGCCCTTGAACAACATAAAAGGATTCATACCAGGGAGAAACCTTTTGGGTGTGACGAGTGTGGAAAAGCCTTCA

a score=13332
s chr3            98427748 912 + 160039680 GAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAGGGCATCCGAATGAGGCGGCGGTGGGA
s HiC_scaffold_1 160468523 871 + 233722169 GAGAAACCATATGAATGCAATGAATGTGGAATTGCCTTTAGTCAGAAGTCTCACCTTGTTGTACATcagagaactcacactggagaaaagcCATATGAATGTGTTCAATGTGGCAAAGCCCATGGTCATAAACATGCCCTTACTGACCACCtaagaattcatactggggaaAAGCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAA---------------------------------------GCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAACATGTGAGAACTCATACAGGTGAAATACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTTTGGACATAGCTCATCTCTTACTTACCATATGAGAACCCATACTGGTGAAAATCCCTTCGAATGTAATCAGTGTGGGAAGGCCTTTAAACAAATTGAAGGTCTTACTCAACATCAGAGAGTTCATACCGGGGAGAAACCATAtgaatgtaatgaatgtgggaaagcttttagccaAAAGTCACATCTCAttgtacatgaaagaactcacacaggTGAGAAACCATATGAATGCAatgaatgtggaaaagctttcaatGCAAAGTCACAACTCGTTATACATCAGAGATcccacacagg--agagaaaccctatgaatgtaatgaatgtggga

a score=9293
s chr3            98427751 909 + 160039680 AAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCC-TCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACC---TTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAGGGCATCCGAATGAGGCGGCGGTGGGA
s HiC_scaffold_1 160468442 868 + 233722169 AAACCCTATGAGTGTGATCAATGTGGCAAGGTTCTCAGCCATAAACAAGGACTTATTGACCACCACAGAACTCATACAGGGGAGAAACCATATGAATGCAATGAATGTGGAATTGCCTTTAGTCAGAAGTCTCACCTTGTTGTACATcagagaactcacactggagaaaagcCATATGAATGTGTTCAATGTGGCAAAGCCCATGGTCATAAACATGCCCTTACTGA-CCACCtaagaattcatactggggaaAA---------------------------------------GCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAAGCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAACATGTGAGAACTCATACAGGTGAAATACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTTTGGACATAGCTCATCTCTTACTTACCATATGAGAACCCATACTGGTGAAAATCCCTTCGAATGTAATCAGTGTGGGAAGGCCTTTAAACAAATTGAAGGTCTTACTCAACATCAGAGAGTTCATACCGGGGAGAAACCATAtgaatgtaatgaatgtgggaaagcttttagccaAAAGTCACATCTCAttgtacatga-aagaactcacacaggT----GAGAAACCATATGAATGCAatgaatgtggaa

a score=5418
s chr3            98427760 249 + 160039680 CGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCT---CGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggc
s HiC_scaffold_1 191319885 249 + 233722169 CGCTGCGTCATCTGCCATCGCGGCTTCAACTCGCGCAGCAACCTGCGCTCGCACATGCGCATCCACACGCTGGACAAGCCCTTCGTGTGCCGCTTCTGCAACCGCCGCTTCAGCCAGTCGTCCACGCTGCGCAACCACGTGCGCCTGCACACGGGCGAGCGCCCCTACAAGTGCCAGGTGTGC--CAGAGCGCCTACTCGCAGCTGGACGGGCCTGCGCGCCCACCAG-AAGAGCGCGCGCCACCGGGCCGC

a score=4365
s chr3            98427815 241 + 160039680 TGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCT--ACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccg-gcgcgcgcacgcggc-----ggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgc--ggcccTTCGCATG
s HiC_scaffold_1 192827505 242 + 233722169 TGCCGCTGCCCCCAGGTGAGAAGCCGCACAAGTGCCAGGTGTGTGGCAAGGCCTTCAGCCAGAGCTCCAACCTCATCACGCATAGCCGCAAGCACACGGGCTTCAAGCCCTTCACCTGCGACCTCTGTGC--CAAGGGCTTCCAGCGCAAGGTAGACCTGCGGCGGCACCGTGAGAGCCAGCACAGCCTCAAGTGAGGCTGCCGCCCGGACCCAG-------GCTGGCCGTGTTGCCTGACCCTCAGCATG

a score=5798
s chr3            98427856 558 + 160039680 TGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTG------CTCAGCCAc--cggcgcgcgcacgcggcggc---------gggcggcggcgcgggctcggcgggctcggcggcggcg--------ctgcggcccTTCGCATGCGGGGAG---TGCGGCAAGGGGTT------------------CGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCC------------ACACCGGCGAGAAGCCGCACGGCTGCGGCGAG------TGCGGCA--AGCGCTTCAGCTGGCGCTCG--GACCTGGTGAAGC----ACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCG-GCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTC
s HiC_scaffold_1 192827033 612 + 233722169 TGCGGCAAAGCCTTCAAACGCTCGTCCACCCTGTCCACCCACCTCCTCATCCACTCGGACACCAGACCCTACCCCTGCCAGTTCTGTGGCAAACGCTTCCACCAAAAGTCAGACATGAAGAAGCACACCTACATCCACACGGGTGAGTGGCTGCCCCGCCGCAGGGCAGGGG-ACAGGCCCAGGGGCCACAGGGGCGAGGAGGTTGGCCTGCTGCTCTTCGGGTGAGAGGAGGCGCTTGGTCAGCGCTTGTCCACTCTTTGCTGCCTCATCCGCCCCTCGCTGTCACCCGAAT-CCAGCTCCCTCTATGGGGGTGCTGCGCCAGCCGTGGGCTCCGTGGGTGCACAGGGGCCTGACTCGGCGGGAGGGGTCCATCTGTCTCCCGCTGTCCTCAGGGAGTTGTGGTCATCCCGTGCA---------GTGGCCCAGGGCAGGTGTGGAGCGCGTGGGAGGGCACCAGGCCGCGCTGACCCCGCTGTGC-------CGC-TGCCCCCAGGTGAGAAGCCGCACAAGTGCCAGGTGTGTGGCAAGGCCTTCAGCCAGAGCTCCAACCTCATCACGCATAGCCGCAAGCACACGGGCTTCAAGCCCTTCACCTGCGACCTCTGTGCCAAGGGCTTC

a score=4271
s chr3            98428002 289 + 160039680 gggcggcggc-gcgggctcggcgggctcggcggcggcgctgcggc-----ccTTCGCA--TGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCT--------CTTCACGCACA-------AGCGCACGCACTCGGGC
s HiC_scaffold_1 191319853 278 + 233722169 GGGATGCGGCTGCGGGCACGGCGGGC----CGCATGCGCTGCGTCATCTGCCATCGCGGCTTCAACTCGCGCAGCAA------CCTGCGC---TCGCACATG------------CGCATCCACACGCTGGACAAGCCCTTCGTGTGCCGCTTCTGCAACCGCCGCTTCAGCCAGTCGTCCACGCTGCGCAACCACGTGCGCCTGCACACGGGCGAGCGCCCCTACAAGTG--CCAGGTGTGCCAG-------AGCGCCTACTCGCAGCTGGACGGGCCTGCGCGCCCACCAGAAGAGCGCGCGCCACCGGGC

a score=7073
s chr3            98428028 587 + 160039680 cggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCG----AGTGCGGCG---AGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAG---TGTGGCAAGGGCTT------------------CGGCCGCAACTCGC--------------------------------ACCTCGTCAACCAC-----CTGCGCGTGCACACCGGC------------GAGAAGCCCTTC---------------------GGCTGCGGCCAGTGCGAGAAGCGCTTCAGCG------------------------ACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAG
s HiC_scaffold_1 192827003 675 + 233722169 CGGCAGGAGCGCAGC-----TTCGAGTGCCGGATGTGCGGCAAAGCCTTCAAACGCTCGTCCACCCTGTCCACCCACCTCCTCATCCACTCGGACACCAGACCCTACCCCTGCCAGTTCTGTGGCAAACGCTTCCACCAAAAGTCAGACATGAAGAAGCACACCTACATCCACACGGGTGAGTGGC--------TGCCCCGCCGCAGGGCAGGGGACAGGCC-----CAGGGGC---------------CACAGGGGCGAGGAGGTTGGCCTGCTGCTCTTCGGGTGAGAGGAGGCGCTTGGTCAGCGCTTGTCCACTCTTTGCTGCCTCATCCGCCCCTCGCTGTCACCCGAATCCAGCTCCCTCTATGGGGGTGCTGCGCCAGCCGTGGGCTCCGTGGGTGCACAGGGGCCTGACTCGGCGGGAGGGGTCCATCTGTCTCCCGCTGTCCTCAGGGAGTTGTGGTCATCCCGTGCAGTGGCCCAGGGCAGGTGTGGAGCGCGTGGGAGGGCACCAGGCCGCGCTGACCCCGCTGTGCCGC-TGCCCCCAGGTGAGAAGCCGCACAAGTGCCAGGTGTGTGGCAAGGCCTTCAGCCAGAGCTCCAACCTCATCACGCATAGCCGCAAGCACACGGGCTTCAAGCCCTTCACCTGCGACCTCTGTGCCAAGGGCTTCCAGCGCAAGGTAGACCTGCGGCGGCACCGTGAG

a score=10999
s chr3           98428044 577 + 160039680 gcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCAC
s HiC_scaffold_1 47568838 577 + 233722169 GCCGTACAAGTGTGATGAATGCGGGAAAGCTTATATGTCCTATTCCAGCCTTATAAACCATAAAAGCACTCACTCTGGGGAAAAGAACTGTAAATGTGATGAGTGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGAGAAAAGCCCTATGAGTGTGGTGAGTGTGGGAAGGCCTTCAGAAATAGTTCTGGTCTCCGAGTCCACAAAAGGATACACACAGGGGAAAAACCTTATGAATGTGACATCTGTggaaaaacttttagtaatagcTCTGGTCTGAGGGTTCACAAAAGGATTCATACAGGTGAGAAGCCCTATGAATGTGATGAGTGTGGAAAGGCCTTCATTACTTGCAGGACACTTTTAAATCATAAAAGCATCCACTTTGGAGATAAACCATATAAATGTGATGAGTGTGAGAAATCCTTCAATTATAGCTCTCTCCTTATTCAGCATAAAGTCatccacactggagagaaaccttatgaatGTGATGAATGCGGCAAGGCCTTCAGGAACAGCTCGGGCCTCATAGTGCATAAAAGgattcac

a score=9235
s chr3           98428086 491 + 160039680 CTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCAC-CTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGG
s HiC_scaffold_1 47570199 491 + 233722169 CTCACTTCTTTCTCAACACAAAAGAGTACACACtagagagaaaccctatgaatgtgaTAGATGTGAAAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAGTACATACTGGGGAAAAGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAATCATAAAAGTACCCACCCTGGCAAGACACCCTATACATGTGATGAATGTGGTAA-GGCTTTTTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGAGAGAAACCTTTCAAGTGTGTTGAGTGTGGAAAATCTTTCAGTTACAGCTCTCTCCTGTCTCAGCACAAGAGGATCCATAcaggggagaaaccttatgtatgtgaTGGATGTGGGAAGGCATTCAGGAATAGCTCAGGCCTCACAGTGCATAAAAGGATCCACACAGGTGAAAAACCCTTTGGATGTGATGAATGTGGGAAGG

a score=8873
s chr3           98428086 574 + 160039680 CTCGCATCTGGCCAATCA-CCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCT--CTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAGGGCATCCGAATGAGGCGGCGGTGGGA
s HiC_scaffold_1 47570031 572 + 233722169 CTCGAGCCTTATAAATCATCCCTTGGGTGCACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGC-CTTCATCACATACCGAACCCTTATAAATCACAAAAAAATTCATCTTGGTGAGAAGCCCTACAAATGTGATGTTTGTGAGAAATCTTTTAATTACACCTCACTTCTTTCTCAACACAAAAGAGTACACACtagagagaa--accctatgaatgtgaTAGATGTGAAAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAGTACATACTGGGGAAAAGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAATCATAAAAGTACCCACCCTGGCAAGACACCCTATACATGTGATGAATGTGGTAAGGCTTTTTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGAGAGAAACCTTTCAAGTGTGTTGAGTGTGGAAAATCTTTCAGTTACAGCTCTCTCCTGTCTCAGCACAAGAGGATCCA--TAcaggggagaaaccttatgtatgtgaTGGATGTGGGA

a score=8988
s chr3            98428087 494 + 160039680 TCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCG-------GACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTT
s HiC_scaffold_1 160468571 494 + 233722169 TCTCACCTTGTTGTACATcagagaactcacactggagaaaagcCATATGAATGTGTTCAATGTGGCAA-------AGCCCATGGTCATAAACATGCCCTTACTGACCACCtaagaattcatactggggaaAAGCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAAGCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAACATGTGAGAACTCATACAGGTGAAATACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTT

a score=9138
s chr3           98428102 506 + 160039680 CACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATC-----CAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCA
s HiC_scaffold_1 47568812 506 + 233722169 CATAAACGGATCCATACTGGGGAGAAGCCGTACAAGTGTGATGAATGCGGGAAAGCTTATATGTCCTATTCCAGCCTTATAAACCATAAAAGCACTCACTCTGGGGAAAAGAACTGTAAATGTGATGAGTGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGAGAAAAGCCCTATGAGTGTGGTGAGTGTGGGAAGGCCTTCAGAAATAGTTCTGGTCTCCGAGTCCACAAAAGGATACACACAGGGGAAAAACCTTATGAATGTGACATCTGTggaaaaacttttagtaatagcTCTGGTCTGAGGGTTCACAAAAGGATTCATACAGGTGAGAAGCCCTATGAATGTGATGAGTGTGGAAAGGCCTTCATTACTTGCAGGAC-----ACTTTTAAATCATAAAAGCATCCACTTTGGAGATAAACCATATAAATGTGATGAGTGTGAGAAATCCTTCAATTATAGCTCTCTCCTTATTCAGCA

a score=8517
s chr3           98428102 473 + 160039680 CACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAA
s HiC_scaffold_1 47568644 473 + 233722169 CAGCAGAAAACCAGTGCTGTTAAGAATTCACATAAATGTGATGAGTGTGGGAAATCCTTCAAATATAATTCCCGTCTCGTGCAACATAAAATTATGCACACTGGTGAAAAACGCTATGAGTGTGATGACTGTGGAGGGACTTTCCGAAGTAGCTCCAGCCTTCGAGTCCATAAACGGATCCATACTGGGGAGAAGCCGTACAAGTGTGATGAATGCGGGAAAGCTTATATGTCCTATTCCAGCCTTATAAACCATAAAAGCACTCACTCTGGGGAAAAGAACTGTAAATGTGATGAGTGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGAGAAAAGCCCTATGAGTGTGGTGAGTGTGGGAAGGCCTTCAGAAATAGTTCTGGTCTCCGAGTCCACAAAAGGATACACACAGGGGAAAAACCTTATGAATGTGACATCTGTggaaa

a score=8070
s chr3           98428164 422 + 160039680 CTGGCGCTCGGACCTGGTGAAGCA-CCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCT
s HiC_scaffold_1 47570025 422 + 233722169 CTCACTCTCGAGCCTTATAAATCATCCCTTGGGTGCACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGA-GAAGCCTTCATCACATACCGAACCCTTATAAATCACAAAAAAATTCATCTTGGTGAGAAGCCCTACAAATGTGATGTTTGTGAGAAATCTTTTAATTACACCTCACTTCTTTCTCAACACAAAAGAGTACACACtagagagaaaccctatgaatgtgaTAGATGTGAAAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAGTACATACTGGGGAAAAGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAATCATAAAAGTACCCACCCTGGCAAGACACCCTATACATGTGATGAATGTGGTAAGGCTTTTTTCT

a score=3474
s chr3            98428182 66 + 160039680 GAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAG
s HiC_scaffold_1 175952016 66 + 233722169 GAAGCACATCCGTGTCCACACGGGTGAGAAGCCCTATGCCTGCCTGAAGTGCGGCAAGAGATTCAG

a score=6616
s chr3           98428208 374 + 160039680 AGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTT-CTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTC
s HiC_scaffold_1 47568666 374 + 233722169 AGAATTCACATAAATGTGATGAGTGTGGGAAATCCTTCAAATATAATTCCCGTCTCGTGCAACATAAAATTATGCACACTGGTGAAAAACGCTATGAGTGTGATGACTGTGGAGGGACTTTCCGAAGTAGCTCCAGCCTTCGAGTCCATAAACGGATCCATACTGGGGAGAAGCCGTACAAGTGTGATGAATGCGGGAAA-GCTTATATGTCCTATTCCAGCCTTATAAACCATAAAAGCACTCACTCTGGGGAAAAGAACTGTAAATGTGATGAGTGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGAGAAAAGCCCTATGAGTGTGGTGAGTGTGGGAAGGCCTTC

a score=4755
s chr3            98428258 362 + 160039680 CACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACG--TGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACC---------ACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGC-------ACCTTGCACAGCACCAGAAGTTGCA
s HiC_scaffold_1 224514951 362 + 233722169 CACCTGGCCCGGCACATGAAGACACACAGTGGCGAGAAGCCCTTCCGCTGTGCCCGCTGTC---------CTTACGCCTCAGCTC--ATCTGGATAACCTGAAACGGCACCAGCGTGTCCACACGGGAGAGAAGCCCTACAAGTGTCCCCTCTGCCCCTACGCCTGTGGCAACCTGGCCAACCTCAAGCGTCATGGTCGAATCCACTCTGGTGACAAACCTTTTCGGTGTAGCCTTTGCAACTACAGCTGCAATCAGAGCATGAACCTCAAACGCCACATGCTGCGGCACACGGGCGAGAAGCCCTTCCGCTGTGCTACCTGC-------GCCTACACCACAGGCCACTGGGACAACTACAAACGCCACCAGAAGGTGCA

a score=4749
s chr3           98428312 348 + 160039680 GAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAGGGCATCCGAATGAGGCGGCGGTGGGA
s HiC_scaffold_1 47568686 346 + 233722169 GAGTGTGGGAAATCCTTCAAATATAATTCCCGTCTCGTGCAACATAAAATTATGCACACTGGTGAAAAACGCTATGAGTGTGATGACTGTGGAGGGACTTTCCGAAGTAGCTCCAGCCTTCGAGTCCATAAACGGATCCATACTGGGGAGAAGCCGTACAAGTGTGATGAATGCGGGAAAGCTTATATGTCCTATTCCAGCCTTATAAACCATAAAAGCACTCACTCTGGGGAAAAGAACTGTAAATGTGATGAGTGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGG--AGAAAAGCCCTATGAGTGTGGTGAGTGTGGGA

a score=4550
s chr3            98428329 157 + 160039680 CGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGC------------GAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGC-ACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGC
s HiC_scaffold_1 191319905 163 + 233722169 CGGCTTCAACTCGCGC------AGCAACCTGCGCTCGCACATGCGCATCCACACGCTGGACAAGCCCTTCGTGTGCCGCTTCTGCAACCGCCGCTTCAGCCAGTCGTCCACGCT-GCGCAACCACGTGCGCCTGCACACGGGCGAGCGCCCCTACAAGTGCCAGGTGTGC

a score=4008
s chr3           98428390 187 + 160039680 TGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGG
s HiC_scaffold_1 47568680 187 + 233722169 TGTGATGAGTGTGGGAAATCCTTCAAATATAATTCCCGTCTCGTGCAACATAAAATTATGCACACTGGTGAAAAACGCTATGAGTGTGATGACTGTGGAGGGACTTTCCGAAGTAGCTCCAGCCTTCGAGTCCATAAACGGATCCATACTGGGGAGAAGCCGTACAAGTGTGATGAATGCGGGAAAG

a score=3721
s chr3            98428417 98 + 160039680 GACTTCTCCACGCT-CACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCT
s HiC_scaffold_1 175951998 99 + 233722169 GACTTTGACAGACTGCAAGAAGCACATCCGTGTCCACACGGGTGAGAAGCCCTATGCCTGCCTGAAGTGCGGCAAGAGATTCAGTCAGTCCAGCCACCT

a score=12260
s chr3           98468657 227 + 160039680 CTTCTTGTGCTCCTCCCGGTAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTC---ATTTCCA----TTCCCAGTGCCCGTCCGGCTCACGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCAGACGCAGCCTCCTCACCCTCTCTGCTCTG
s HiC_scaffold_1 13382367 232 + 233722169 CTTCTTGTGCTCCCCTCTGCAAGTTCACACAGAAGAGGCCTATGAGGACATTT-GCCCCTTGCCCTCTTAGCATCTCCTTTGCCCAAGTCTACTTGTTTTTTTCTGGGATGCACAGATTCTCCCAGTGCCCATCAGGCTCTCACTTGCCCTGGTGCCGTCTCTGTGGAGCTCAATGTACTGCAACAGCTG-GAGAGTAGGAGTCAGAAATAGCCTCCTTGATCTCCCTGCTCTG

a score=12260
s chr3           98522114 227 + 160039680 CTTCTTGTGCTCCTCCCGGTAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTC---ATTTCCA----TTCCCAGTGCCCGTCCGGCTCACGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCAGACGCAGCCTCCTCACCCTCTCTGCTCTG
s HiC_scaffold_1 13382367 232 + 233722169 CTTCTTGTGCTCCCCTCTGCAAGTTCACACAGAAGAGGCCTATGAGGACATTT-GCCCCTTGCCCTCTTAGCATCTCCTTTGCCCAAGTCTACTTGTTTTTTTCTGGGATGCACAGATTCTCCCAGTGCCCATCAGGCTCTCACTTGCCCTGGTGCCGTCTCTGTGGAGCTCAATGTACTGCAACAGCTG-GAGAGTAGGAGTCAGAAATAGCCTCCTTGATCTCCCTGCTCTG

a score=19526
s chr3            98579232 918 + 160039680 TGGAAGAAATTGTAATTCttttttttttt---tttttaataaaaaaattGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAG---------CCACTTTTTTTTTTTTTTTTTGCAATTACAGAGTGGTATTCAGTTAACAGAACAACAATTATCTTCGTATAAGCTGTATCAGAGACAACTGAAGATGAAaaaaataaaaccaaaagaaaaaaaaaaaccaaaaaccaaaCTGCTGTCCCCATATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAATCCCAGACTGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACC-AGGACAAGGCTATCTAAAGACACGTTCAGTAGTGTGTTAACTATACAAAA----AAAGACACTGTACAG-------TTTAAAAACAAATCTTA--CACAGTCTTACATTT-------CAATTTTT----TTTCTTTAAAAGGAGTGAGTTATGTACAGGGGGGGTTAAACGCTTTATAGATAAGAAAAAAAAAACTGCGCTAGAACCAACTTAttcatcatcttcttcatcttcttcttactcctcttcctcatcctcttcctcctcctcctcatcttcctcttccttctttttcttGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCAACAGGTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTCATACTTCTCCTTCAGCTTGGCAGCTTTCTTCTCATAGGGCTGCT-----TGTCATCTGCTGCAG---TGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTG------GGGCGGTACTCAGAGCAGAACA--AGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACATCTTTTTGGTCTCCCCTTT
s HiC_scaffold_1 126058628 879 + 233722169 TGAAGGAAATCATTCTTCCtaaatgtcttaaatttttaa----aaagtcacattcaCGTATAAACATTCAGTATATGAACAGAGCAGGTGCAGCAGCGTCATTATGCCTCATTACTTGCAGTCATAGCAGGGT-CACAATTAACATAACAACT----TTTTTGTGTAA-CTGAATCAAAGAcaattgaaaatggaaaaaatca--------------------------------------tCTCTTTACAAAGCTAATTTTTGCTATGCACTAATAA-AACCTGCTT-AAGTTTCCATGCCAATTCAAAATGCCATGCAGTTTCAACCAAGGTTATCAGCTATTGAAAATAGCATTAAGGACAGAGTTATCCAAAGACTCGCTTGgta--ttattaattttacaaaaaaataaagacactcTGCAGTATtcacttttaaaacaaatcatatttacatttttacactTACATAAACACATTTcagggtatttttaaaattagt-agtgat-------ggaaattaaatattttg-ggcTAAGAAAAACGATACTG-----GAACCAACtta---------ttgttcattattttttcatcatttttctttactctcttatttctgattct-------tttttcctttgttttc-----ctccccagttttaa--aaaatatttcccccTGCATCACACTTTCCTTTGCCCCCAAATACAGCAATAGCCTTTTTAGTATTTCTCTTTATCTCAAAGCCTTACTTTTCTTAAGGCTATTTATGGTATTATCTGCaggagttatttttttttttatttatctcactTCCCAT--AGCATTACCAATGAATATGCCAGGGTAATCTCCTGTGATTAGGAGTGGTGGACaattttcaaaaccaaacaagagaaaaagactgGAGGAGATCACTTTGGTAGA-GGGAATCCTTCATGCTGTCTTCCGCTTTTCCTTT

a score=39121
s chr3           98579253 1293 + 160039680 tttttttttttttaataaaaaaattGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAGCCACTTTTTTTTTTTTTTTTTGCAATTACAGAGTGGTATTCAGTTAACAGAACAACAATTATCTTCGTATAAGCTGTATCAGAGACAACTGAAGATGAAaaaaataaaaccaaaagaaaaaaaaaaaccaaaaaccaaaCTGCTGTCCCCATATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAATCCCAGACTGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAAGGCTATCTAAAGACACGTTCAGTAGTGTGTTAACTATACAAAAAAAGACACTGTACAGTTTAAAAACAAATCTTACACAGTCTTACATTTCAATTTTTTTTCTTTAAAAGGAGTGAGTTATGTACAGGGGGGGTTAAAC--GCTTTATAGATAAGAAAAAAAAAACTGCGCTAGAACCAAC----------------------------------------------------------------------------------------------------------------TTAttcatcatcttcttcatcttcttcttactcctcttcc---tcatcctcttcctcctcctcctcatctt----------------------------------------------------------------------------------cctcttccttctttttcttGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCAACAGGTTTTCCTTTAGCTCTGTAGG---CAGCAATATCCTTCTCATACTTCTCCTTCAGCTTGGCAGCTTTCTTCTCATAGGGCTGCTTGTCATCTGCTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAGCAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACATCTTTTTGGTCTCCCCTTTGGGGGGGGGGGAGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGCCAGCCTTTGCCATATCTTCAATTTTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTT--GGAGAA----TGAGAAGTTGACAGAAGCATCCGGGTGCTGCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCGCGAGGCACAGAGTCGCCCAGTGCCCGTCCGGCTTGCGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCAGACGCAGCCTCCTCACTCTCTCCGCTCTG
s HiC_scaffold_1 13381284 1315 + 233722169 TCTCTTTTTGCCTAATAAAAAT-TGGTATTTACTTAGAAGCACTGAGAATGTCAACAAA-CAGGTGCAGTTTCCTTTT------GCAATTACAGAGTGGTATTCAGTTAGCA---CAACAGTTATTTT-GTATAAGCTGCAGTGGAGAAGACTGA----------------------------------------------------GTCCCTGTAGATAACTAATGTGTGCTGTGCACCAA---GAACCTGCTCCGAGTTCCCGTGCTGACTTACAGCCCCCACCTGTGCCAGCCA--GTGAGTG-CTACTGAAAACACCACCAG-CCTGGGCTGTCTCCAGAC-CACTTGGGAGTGTATAAA------------------TGTacg------aaataaat-----------------------------------aaataagtaaaataacgACAGTACAGGTTAAAACAATCTTCTAGCTGACAT-------------------TCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTCATCATCATCACCTtcatcttcctcctgctcctcctccgtctcttcatcttccttctctttcttcttttgttattttttattttggtacaagAATCAAGTGAACAGAGAggctacttgccaggcaggcgctgtgctgctgagccgtGTCCACCTCGCTCTCCTGttcctctctgctctctgcctTGACATCTCCCTGTTTTGCCGCACCAGGCTTTC-TTTAGCTCGGTAGGAGGCAGCGACGTGCTTCCTGTGTTTTCCCTGCAGCTTGGCA-CCTTCTCCCCA---GGCTGTGTGTCACCTGCTGCAGTGTG--CCCACTTGTCTTCCAGTTTCACAGCGACATCACCCCTGGAGAGGCCAGGATGTTCTCCTTTGAGTTTTGGGTGGCACTCGGAAGAGAATAAG-----GTCTGA--GAGGCCTCTTAGGTGTGTTGGGATCCTTGAGCTTCTTTTGCACTTCTCCTCTAGGGGA-------acacacattttcatttctctttcacaGCAAGCCTTGTCCACCTTTGCTATGTCTTCAAATTGTCC-------TTCAGCAGACGTGACCTTCCACCTCTCTG-GCACATCTTAAGAAGAAACTCTGAGAAGTCAGTGGAAACATCTGGGTTCT---TCTTGTGCTCCCCTCTGCAAGTTCACACAGAAGAGGCCTATGAGGACATTT--GCCCCTTGCCCTCTTAGCATCTCCTTTGCCCAAGTCTACTTG-TTTTTTTCTGGGATGCACAGATTCTCCCAGTGCCCATCAGGCTCTCACTTGCCCTGGTGCCGTCTCTGTGGAGCTCAATGTACTGCAACAGCTG-GAGAGTAGGAGTCAGAAATAGCCTCCTTGATCTCCCTGCTCTG

a score=43030
s chr3            98579320 1173 + 160039680 TTTTTTTTTTTTTTTTTGCAATTACAGAGTGGTATTCAGTTAACAGAACAACAATTATCTTCGTATAAGCTGTATCAGAGACAACTGAAGATGAAaaaaataaaaccaaaagaaaaaaaaaaaccaaaaaccaaaCTGCTGTCCCCATATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAATCCCAGACTGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAAGGCTATCTAAAGACACGTTCAGTAGTGTGTTAACTATACAAAAAAAGACACTGTACAGTTTAAAAACAAATCTTACACAGTCTTACATTTCAATTTTTTTTCTTTAAAAGGAGTGAGTTATGTACAGGGGGGGTTAAACGCTTTATAGATAAGAAAAAAAAAACTGCGCTAGAACCAACTTAttcatcatcttcttcatcttcttcttactcctcttcctcatcctcttcctcctcctcctcatcttcctcttccttctttttcttGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCAACAGGTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTCATACTTCTCCTTCAGCTTGGCAGCTTTCTTCTCATAGGGCTGCTTGTCATCTGCTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAGCAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACATCTTTTTGGTCTCCCCTTTGGGGGGGGGGGAGATGTAGGTTTTCATTTCTC-TTTCATAACGAGCCTTGCCAGCCTTTGCCATATCTTCAATTTTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAA---TGAGAAGTTGACAGAAGCATCCGGGTGCTGCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCGCGAGGCACAGAGTCGCCCAGTGCCCGTCCGGCTTGCGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTG
s HiC_scaffold_1 121717692  948 + 233722169 tttttttttttttttttgcaattacaGAGCAATATTCAGTTAACA---CAACAATTATTTT-GTATAAGCTGCATCACAGACAGTTGAAGGGGAAAAG-------------------------------------CTACTGTCCCTGTACAAAA----TTTGTGCTGTGCA----------------------------------------TCCCATTCTGTAGCTGGCAAAGTTAGTGGCTACTGAAAATAC-ACCAGGACAGGGCTATCTACAGACATATGCAGTCGTATAT--------AAAAGAAAGACATTGCACAGCTTAAAA-CACATCTTACAGAGCTTtacttttca-ctgtttttctttaaaatgaatgagTTGTGTACAGGGAG--TTTAATATTATATAGACAAAAAAAA------TGCACTGGAACCAAGTGATTCATCATAGTc---attttctgttt------------catctttgTCCTTATCctcttcatcttccttttttttctttttc------------gtcttgacagcttcctttctctc--catcAGGTTTTCCTTTA-TTCGGGAGACAATGATGTCTTTCCCACACTATTCCTT-AGTGCGGCAGCCTTCCCCTCATAAGGCTGCTTGTCATCTGATGCAGTGTCCTTGCACATTTCTCCCAGTTTCTTTGTGAAGTCACCAATGGCAAGGCCAGGAT--TCTCCTCTGAGCTTTGGAGGATACTCAGAACAGAACAAGAAGGCGGCCAGAGGGGCCC---CAGGCTCACTGGGATCCTTGAAC-----TTTGGTTTTTCTTTAGGAGG-------AatgtaagttttcatttctcttttcataaTGG--CTTCTCCATCTTTGCCGTGTCttcaaatttt-cctttctctttagcaGACATGATCTTCCATTTTTATGAGCGCTTCTTAGAAAAGCCTGAGAAGTTAATGGAAGCATCTGAG------------------------------TGTACAAAGAATGCGTATGATGACA--TTTGCCCCCCAGCTTCTTAGGCCCTCCTTTGCC------------------------------------------ATGCCCATCTGGCTCTCACTTGCCCCCGCACTGTCTCTGTGCAGCTCCAtgtactg

a score=18586
s chr3            98579796 603 + 160039680 ctcttcctcatcctcttcctcctcctcctcatcttcctcttccttctttttcttGCTCTTTTCAGCCT---TGACCACC----CCCTTTTTCGCTGCAACAGGTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTCATACTTCTCCTTCAGCTTGGCAGCTTTCTTCTCATAGGGCTGCTTGTCAT------CTGCTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTG-CAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAGCAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACATCTTTTTGGTCTCCCCTTTGGGGGGGGGGGAGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGCCAGCCTTTGCCATATCTTCAATTTTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAA---TGAGAAGTTGACAGAAGCATCCGGGTGCTGCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACAT---TTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATG
s HiC_scaffold_1 116832060 600 + 233722169 CTCGTTCTTATCAtcatcttcttcctc-------tcctcctcaaTCTTCTGGTTCATATTTTGAGCCTATTGGGCTATCAGGACTCTTCTTTCCTCCTAGACTTTTGCCGTTGGCATGATATGCAGCTATATCCTTTTCATATATCTCTTTTAGCTTAGCTGCTTGTTGTTCATATAGTTGTTTACCTTGGCTGACTGCTCAGACCATATTTCATCTCCCACCTTTCTTTTTCATCAGTATCTCCAATGGACAGGCCTG--TGTTCACTTTTGATCTTTGGGCAATAttcagagcaaaacagaaaaaagaaagatggtgGTCTTTTAGGAGCatttaggaaatt---tttttctctcatcacCATTTTTGGGAGGA-----CCATAATTTTTCACCACCTTGTCATAGCAAGCTTTATCACTTTTTGCCGTATCTTCAAACTT-CAACTTTTCCTTGGCAGACATGGTCTCCCATCCCTCCAAGCACTTCTTGGAAAACTTCACAAAGTTGACCAAGGAGTCAGGGTGCTTCTTCTTGTGCTCCTCATAGCAGGTCTACACAAGGCATAC-----AAGGCATACACTTTGTCCCATGGTTTGTTGGGGCCTATCCTGACCATG

a score=9974
s chr3           98821093 619 + 160039680 CATGAAGGCGGTGACAGAGCTGAATGAACCACTATCTAATGAAGATCGAAATCTCCTCTCTGTGGCCTACAAGAATGTAGTTGGTGCCAGGCGATCTTCTTGGAGGGTTATTAGTAGCATTGAGCAGAAAGCCATGGCAGATGGGAATGAGAAGAAGCTGGAGAAAGTTAAAGCCTACCGGGAGAAGATTGAAAATTGAAAAGGAGCTGGAGACAGTTTGCAATGATGTCTTGGCTCTGCTTGACAAGTTCCTTATCAAGAACTGCAATGATTTTCAGTATGAGAGCAAGGTATTCTACCTGAAAATGAAGGGCGATTACTACCGCTACCTGGCAGAGGTGGCTTCTGGGGAGAAGAAAAACAGTGTGGTTGAAGCTTCTGAGGCCGCGTATAAGGAAGCCTTCGAAAT--CAGCAAAGAGCACATGCAGCCAACACACCCCATCCGGCTTGGCCTGGCCCTCAATTTTTCTGTGTTCTACTATGAGACCCAGAATGCACCAGAGCAAGCCTGCCTCTTAGCCAAACAAGCCTTCGATGATGCTATAGCTGAACTGGACACATTA-AACGAGGATTCCTATAAGGACTCCACTCTCATCATGCAGTTGCTGCGAGACAACCT
s HiC_scaffold_1  6311833 560 + 233722169 CAGGAAGGCAGTGACAAGGCAGGCTGCCAAGCTGTCCAATGGGGAGTGTAGCCTGCCCTTTATGGCCTACAGAAATTTGGTCATGGGCTGCTGGTAAGCCTGGAGAGTCATATCTAGCATTGAGTGGAAAAC------------------------------------TGACACCTCCAACAAGAAG-CTGTCAATTAAGGAGTACC------CCATCTGCATTACTGCCATGGAATTGTTGGACAACTATTTAATGGACAA-TGTAACTACTTCA-----GAGAGTAAATTCTTCTAtctgaaaaggaagagagattacTTGCAAGACCTTGCTGATGTTGCATATGGTGATAAtagaaaaaagttaat---aattcCCAAGGAACTTTACAAAGAAGCATTAAATATGCAAGAAAAGGG---ATGCAACCCACACA-TCAATCTTGCCTGGGTTTGTCCTTGG-CATTCTGCATT-TACTATGAGATCCTTAATAAACCC---CAAACTTGCCATGCACCCTGACTAAAAATGGCAGA-ACTATTTCAGAGCTTCATATACTGTAAGGAACACTCCTACAAAAACAGCACTCGCATCATGCAGCTGCTCAGAGACAACTT

a score=13188
s chr3           99009950 430 + 160039680 aaaagaaggaTTCTAGAAAACAACCCTATAGCTAATGACATTGAGG-AAATTTAAGGTGAATTTTCTAATAGCCTCATTAGTTCATCTCATTGAGTTAGGCCATATTCAGTTC-----------------------CCTTAAAAGAAGCCATAGTTTTCCACAAA-TTTCAAATCATTTTAAGTCTGATTTACTTCATTACTTTAGGTAACATGTTAATGATAGTCAAATAAAAAATGACAACTCTGATTGGGCACTATTGTTAAGTTTAAAGAAAAGAACTAACTG-TGTGTTTGTCTACTCACTGTTCTCTAGTGCAAAACATCAC-TGAGTAAGTTGAGCCATTAACAG---AGCATAGGTAAACTACTGGTTCACAATTCAGTTCAATTTATGACAATCTGACAAATATTTAT-TATGTCTTTGCTAGTTTTTGTGACTCTTAAAGATAAAAAAAAT
s HiC_scaffold_1  8320557 451 + 233722169 AACAGAGCAATCCTGGAAAATAAATCTGTGGCTAATGACATTGGGGGAAACTTGAGGTGAATCACCTAATAGCCTAATTAGCTCATATCACTGACAAAAGCCACATTTAGATCCTATGGCTTCAGTGCTTTACTAACTGTAAAACCAGTCATAGTTTCCCACAAACCTCCAAACCCTTTTAAATATGATTTGGTTCATTATCTCAGATCTCA--TTAATAATAATCAAATAAAGAATTATGCCT----TTGAGAAATGTTAttactttcaaagaaataaagtagTTACTGGGTTTACCCACTAAGTGCTCTGTGATGTGGTATATCATGGGGGCATCTCAGGCCATCAAGAGGACAGCACAGGC-CACTGCTGGAAAACAGTTCAGTTCTGTTTGAGTc---ctcttaaatatttatataagctTCTAGTGGTCTTATGAACTgtagaagattaaaaaaat

a score=8162
s chr3           99113156 152 + 160039680 TTATAGGAAAGCTAAGTGGCAGCTGCAGGCACTGTGCTGACCTGGGCTGTCCAAGT-TCTCCA-GTTACTCTGGTCTACAGCTGGAGATCCCATGGCCACAGCCAGCCAAGGCCCTTGGAAACACGCTGAAGACGtctctttctacccaactat
s HiC_scaffold_1 41703490 153 + 233722169 TTATAGGAAAGGTGAGTGGCAGCCACAGGTATTGGGTTGACCTGAGCTGTCAAAGTCTCTCCAGGTTGCTCTCGCATGCAGTTGGAGATCCCATGGCTACA-CCAGCCACAGCCCTTGGAAACATGCTGGAGAGACATTTTTAATCTAAACTAT

a score=13175
s chr3           99544380 697 + 160039680 AGGGCTCTTTTGTTCCCAAAATCACCATCTATTTGATGTCATCATATTTGGTAACTTTCTCCAGGGG---------CAGATCAGATCCACAATGGCCATACTGAAATCAGGAGTGTAGAAGGCCATGCCAATAAGCCTTCTGTTTAACTCT----AGGATGGACTTGTTCACAATCTTAGCA-GTGCCAGTGGGTGTAAAAATGCTGTTTTGGGCATTTTTG-GGCACCTATGGCCAAAATTTCCCAGAGAGGCTATTTACACTTTTCTGGGTGGTGGTAATGGCATGAGTGGTAGTCATGAG-TCCTTTG----GCCAGGGTGGCTATGTAG---TTTGAGAATCAGGAGGAATCCCACAAAATCTTGAATGAGCTTTCATTATTTTAGTGTTCA-------CATTCATCATAAACAG-------CAGGAGCAGAGATGATGCCCCCTTTAGACTCACTCTACCA---ATGGACCTCAATCTTCTTCATTGTAATGAAGGCACTAGTATTCTCTATAGCATACTCAGAAGTATAAGTACCAAATTTGATGTTCGGAAGTATCTTGCTTATAGATGACAGAGATAGCTATTCCATTGATGG-AAGTTTCCCATTCTCATTCTCAACTGTGTCCCTGC-----TATGGGTGTAATCATGGTGGAACAAGTAGTTTACACACTTGAGGATGATAAAGGGATTATTGATGACAATAATAACCACTTTGACAGAGTTGAACGCAGCC
s HiC_scaffold_1  9527565 710 + 233722169 AGGATTCCTTTGAGCCCTGGTTCACCATCT---TAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCT----CACTCTTGTAGGAATGACATTGCTTACAGTGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGG---TTAGGTGGGTTAGCTGTTAGTAGTATAGGTAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTCTCAGGAGAAGGGG--------------------CTCCAACATTTATATACTTTAGT-TTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTT-GATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAGTGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGCTGGAGTTAAAGTCAGCC

a score=13090
s chr3           99544401 674 + 160039680 TCACCATCTATTTGATGTCATCATATTTGGTAACTTTCTCCAGG-GGCAGATCAGATCCACAATGGCCATACTGAAATCAGGAGTGTAGAAGGCCATGCCAATAAGCCTTCTGTTTAACTCTAGGATGGACTTGTTCACAATCTTAGCAGTGCCAGTGGGTGTAAAAATGCTGTTTTGGGCATTTTTGGGCACCTATGGCCAAAATTTCCCAGAGAGGCTATTTACACTTTTCTGGGTGGTGGTAATGGCATGAGTGGTAGTCATGAGTCC------------------------------TTTGGCCAGGGTGGCTATGTAGTTTGAGAATCAGGAGGAATCCCACAAAATCTTGAATGAGCTTTCATTATTTTAGT-GTTCACATTCATCATAAA-------------CAGCAGGAGCAGAGATGATGCCCCCTTTAGACTCACTCTACCAATGGACCTCAATCTTCTTCATTGTAATGAAGGCACTAGTATTCTCTATAGCATACTCAGAAGTATAAGT--ACCAAATTTGATGTTCGGAAGTATCTTGCTTATAGATGACAGAGATAGCTATTCCATTGATGG-AAGTTTCCCATTCTCATTCTCAACTGTGTCCCT------GCTATGGGTGTAATCATGGTGGAACAAGTAGTTTACACACTTGAGGATGATAAAGGGATTATTGATGACAATAATAACCACTTTGACAGAGTTGAACGCAG
s HiC_scaffold_1 97937085 695 + 233722169 TCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGC--------ATAGGATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATC--CAGTCTTCTGTATAAGAAGGATGACCTG----GTGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTT---AAATACCAGTTCACCCATTTTGATGCT--GATAAATCTTACTCCTGGACT-------------TTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTCCTGAAAGCAG

a score=24059
s chr3            99874158 1518 + 160039680 TTCCCAACTTCTTTAAGGAAGATTCTGTGCTTTGCCAAGGTCTGTCTATCCTTAGGGGCTAACACACAGAAAAGGCAGGGTGAGGTTCTGTTTGCT-----------TCTTTCTATTCTCT------------CCATCCAGTTTTTTTCTCACCCCTTCCTCT-TCTAACACAGACATTATTTTCCAATTTAGCTGATCTCAGATAATGAAAACCTTCCCATCCTCATCTCCTCCA-----CAACCTCATGACTTATTATTCTTTTTACATTTTTGCTCACACTGATGATTCTCCATTGAGCTGGTCCCATCTTCCCCTTGGTATTCCTTAGGGCAAGTTTTGTTCCCTTTAGAAAAGCTTTGGTGACTATCCTAGC--------------------------------CAGTGT----------------GTTAAGTAAAGAATCCTCCATGTCTCAAATTTTTTCTCCTTTCTCTGAA--GCACCTCA-TCAGTATTAGGCACATGGTAGAAATCCGGGCTCACTGTTTAGCTGGTGGCTATAGGGC----------ATGCAAGTAAGACCCTTCCCACCTCAT------CCTCCATGTGGACTTTCTAAAGGTATGGATGCCTTTCTTGCTTGGTGTGGTCTTGTTCACTGTGTAGGGAGAGTGTCTCACAATTTAGATGCCAGGGGCTTGTGTTCAGATCTTACT--------------TTGGAT--AACCCCTTTGCTTTGGTTAACCT----------ATAAAT--------ATTAGTGATGGTTTCCATTTAAG----GTTAGAAGATTATGATGTGATTATGCAAATGCACAG-----------AGTGCTGGGTAAATATTACTTAGTACTGGCATCTCAGCAATGAAACAGA--------AATGGGTCAGGGAATGAATGATTCTGGATATGACGTCCAGACGAGGAAACTCAAGGATGGATGCCATA-----TTAAGAGAAAGATTGCAGGATACCAACCAGAACCTTCATATTTATTGTATTCTCTTCACATTGCCTTTTCTCCGTG-----------------TTTTCTCTGCTTTAATTAACTTACAAAGGGCTTGCTATCTATCCTTACTTTAAAATTAAACA-CTAAAAAATAAAT-GCTCTTTTTTTCATTTT------CCTGTAGGTCAGCTCCCA---CTTCTCTAAAGAAACCTTTCAAATGTCTAAGGGATGTCAATTTAAGATTCTGCTTTGCCCACCCCTCTTCTCTGCCTGCCATGAATCTCCCATGCAGGCTAACAGGGCAGGTTTCTTGCAGGGATGCCTCACACACCTGTC-------TTCTTCCCAGCTGTCACTGCTCTGGTAGGAATTCCAA--GGGAAAGGCCCCAGGGTTGGTGACACCAACTGCTGATCTGCCAATGATACCTCACTCTGGTACAGTGTTGACAGGAGAGAGAGGCTGAAGGAACTGTGCTCCCTGGTGGCAGGTGTGAAGGAGGCCTTCTTTGTGGCAGACATGGCT--ACCAGTCAGGA----AGCACATGCCTTGCTTAGAATACTT--------TTTATTTGTGATGTCCAGCTCCAAGAATAGGAAAGAACTCG--AAGACAGTTCTTGAGGACAATTTGC--------TCTACTGAGTACAGCAAAATACCAGCTACTGAGATAGTTTAGTTATGCATTCAGTTCCCTTAGTTTTGAGATACACAGTAG
s HiC_scaffold_1 123889893 1673 + 233722169 TTCctaatttttgaagaaaagataCCGTTTCATCCTTA---TTTTTTACCCTTAGGGCTTATCACATA--AAAGGCAC--TGAGGAAATCTTTGCTGAAGGATAGATTCTACCTGATTTCTAGGCCTTTGTTGTAATCCTGTTCTATTTTATCTCTTGCTTCCCTTTAGCATATACACTATGCTACCTTTAAACATGTCTTAG----------CTTTCCCGTCTCC--CTCATTCAGAAGGCAGTTTCATGACTTATTATT---TCCATGTCTTTGCTCACACTGAT---CCATCATCGAAACGACTCTATCTCTTCTCT---ATTTCTTGGATCAAAATTAGCCTCTTTTAAGAAATCTTCATTAACTACTCTAGCAAAGTAACAGCTTCACTTTCCTGTAATTGCATCAGTGTCTCAATTTGGTATTTGTTTAAGGAAATGCTCTTCGAAATGTTGTAttccttctcttttatttcagCTGTACCTAGGTTAGTGCTAGGCACACAGCAGAGCTCCAAGCTTACTGTTCAGGGAGCTGGTGTAGGGCTTggacataaatgcaaaaaaaggCAGTTTTTTCCCATAGTAGACTTTCACGTG--CTCTCCAAAGCTCTGg---tctttaatgtttgtt----------ttact-tGTATGGTAAGGACTGGAAGATTTGGA-----GAGCCCTGTGTTCAAATCCCAGTGCCAGCTGTATGACTTGGACCAAGCCACTTAATTTTTGTTACCCTCAGCTGCCTTATAAATGATAATTAAGTAATAATAATTTCC-CTAAAGTGTTGTTAGGAGAATGAGATGTGGTAATATATGTGAACAAGAACCTTATAAAGTACTTGGTAAATATTAGTTAGCTTTAGACACTCCATAAGAAAACATGTTTGAATGAATGTGTCATAGAATTACTCATTTCATGTGTGGTATCCAGATGAGGAGGCTCTGAAATTTCTGACAAAATGGTTTgacagaaaacccacaaaataccAGCCACTTCATCtgtattttctgtgttctttttaaaGATCCTTTATAGTGTGATGGTTTTAGAgagttttttccttcattccaatAAACCCAGAAAGAGTTCCTCAGCTATTCCCTCTGTCTTAATATGCATCTAAAATGTAGTTTGCTGCGTATCTCGATTTAGCCCACCTGTGGGTCACTTTGCAGGTCTCTCCTAAGTGAGCTTTACACCTG-CTAAGAAGAGCGTGTGTGCATCTGTGCTTTATCCTCCCCTCTTTAGTCCTT--CGTGGCTGTGCTATGTAGGTTGATGGGCCGGTTTCCCTGCACTTGTTTTCCAGGGACCTTTCGAGCCTCTTCTTCCAGGCTGCCATTCCTATGCTAGGAATTCCAGATGGGAAGGGCCCCTATGTTGGTGACACCAACTGCTGAGCTGCAAATGATAACTTATTCTGGAGTGGTGCTGACAGAGGGGAAAGCCTGAGGGTCGTGTGTTCCA-AGCAGCAGGT-----GGTGACCCTGGTTCAAGGAGAAATACTTGGACAATTTTTGACAACAGCATAAGCCCAGGTTAGGAGgtttcatcctcctcctctcatTATTATTATCACCAAGAACAAACAGGAACTTGGCAGGAAAGCCCTCGAGGGCAAGCTTCTCTACGTTTCTACTCAGCATCTGGAATAATCAGCTACTGTGatgtttcactt-----tttatttcccttatttttaaaCTACACTGAAG

a score=9310
s chr3            99878569 128 + 160039680 TTGGTGTAATAAATTGTTTCCCCCACTAAATATAAGTTGAAATTTTTCAAGCATATACTTCACTCCATAAGGTTTCCCGAATGCCAGTGGCTAAATCAAAACTATACTATTTGGAGAATTTTCTCTCA
s HiC_scaffold_1 123876508 128 + 233722169 TTGGTGTAATAAATTGTTTCCCTCACTAAATGTAAGTTGAAATTTTATAAGCATATACTTTACTACATAAATTTTCTCATATGCCAATGACTAAAACTAAACTATACTATTTGAAGAATTTTCTTTCA

a score=20624
s chr3            99949868 860 + 160039680 ACAACACTTTTCCAATAAATATAAGTGACTTTTTAATCCAATAGCCAACTCTTCTACCCTGTGTCTATGTTTGGTTTGGCACTTCTTCCTTC---CCTTGTAACCGAAGATGGAGTGAAGAGTGGGGATTGGGGGACTAGAGGTCACACTCCAGATTCACAGAAGCATGAGAATTGCTACCACAGTTCAGTTGCAGCTGTGCATTGTCTCTCAACCAGGCAATAGGTCCTTTGGTACCCGTGCTGCATCTTGGACAGTTTTGGTGTGGGTCCTACCCCTGCTTATC----------------CACTGTCTGGGGACCACTGCCC-TTTGGCTGGAAGTTAGGTACAATAATGAGGTCGACCAC-AAGCTCGATGAAGAACAGACTCAATTAGAACCAGGGTTTAAACACAAAATGTTTATACCTGGCTTCCTACGAGGTATTAAAATCTTACAGAATGACAGAAAACAAGCGCACTGTTGACACAGCTATTAAGtatgagctcaggagggaggagatcgtgtctacctcagttctgtttctgttgccctgcacatggtaggaactcTGTATGAGGGTTAGGCTGCTTGA----GGATTAGGCTGGATGAATGGGTACCTGCTATAGTCTCCAGTCTGCGCTTAGGTGAGACTGGGGGAGGAGCATGCAAAAGGACAAATATACGGAAGA--TGATATAG-ACTCTAGGCCACTGCCCCTTTAGACTTTGTTCACCTCTATAGCAAAAGTTATAACTATAGCAAAAAAAAGTTTTATTTTAACAAAAGTTTTCATTGTGTA---------------------TCACTTGCAAA-AGCCGGGTTGTCAACCCCAGCTACAAAACC-----ATCAAATATGCAGCCAATAAAGCAAGCTGCAAAGAGAGGGGCTCCTG
s HiC_scaffold_1 123825236 863 + 233722169 ATAGTAGCTTTTCAATAAACAAA-------TTTCTATCTAATTATCAATTCTCCCAGCCTATGCCCTCATTTAATCtggtatttcttctttctttccttgcaaCCAAAGATTGAAGAAAGAGTTACAATATCAGGAATAGAGGTCATACTAAAAGCATTTAGGAGCATGAAAATTATTACCATACTTCAATTCCAGATATGCTTTCTCCCTCTCTAAGGAAGCCAGGACTTCTATATCTTTGTTCTATCTTTGGCTATTTCGGTGAGTGTGctgcccctccctctctcctcttgcTAATATACCCTGTCTGGGGACTATTACCCTTTTGGCTAGGAGTTGTGAACAATAATGAGGTCAGCcacaaagctcaatgaagaacaGATTCAATTATAACCAAGGCTTAAATATGTATCTTGTACATCAGACTTCCTACAAGGTATTAAAGTGTCACAatataacatagaagaaatatatgGTTTAACAAATGATTGACTATAAGCTCTTAAGAGTACAAACTATGTCTCACTCAATTTTGTGCCCATTATCcagcaaaagatagaaaat--------------aactGCTTAACAAGAAAATAGCTGAGATAAGCTGAGATTTGCTGTATTCACTG------GCTTAGGTGAGA----GAtcggaaaataaaaaag---aaatataataaagaacAGTTATAATATTCTAGGAAAATGTTTTTTCaagcttgtttgatttttat--taaa---tataaatatagcaaaata----tttaTATC-ACAAACGACATCTGTATGTACACTGTTGAAACCAACTAAATTTCTTTGCAAATCACTGGGTTATCATCCATACTTTAAgaaactttatataaaatatataacaaacaaa--------cagaaaacggCATTCCTG

a score=12927
s chr3           100008335 325 + 160039680 GGCCGCCATTGGAGAGCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTG------ATGAAGAACATCAGCAA---GCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTGAGCATTGTGATCGCAGCCATGAGGAAGGCGG
s HiC_scaffold_1 128303822 309 + 233722169 GGCAGCCAGTGAAGAGCACCAGCCATGCCTCTGCACTATCCCATGACCGCGGGCCTTGACACTGGCTGCAAGGTGGAAAGTGTGAGGTATAGCTGCTGTTTACCAAGGTatagctgctgctgctggtgcctCACCAAGCACATGAAGCCTCTGGGGGACGTGATCTGGGAGGTGT----------------------GTGCACCATGGAGCTGCTCAAGGCCTCCAAGGACAGGCAGGCCCTCCAGTTTGTCAAGAA---ATTGGGGATGCACATCCATGCCAAGAGGAAATGCAAGGAGCTGAGCAGTATGCTGGCTGTCATGGGGAAAGCAG

a score=12104
s chr3           100008335 325 + 160039680 GGCCGCCATTGGAGAGCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTG------ATGAAGAACATCAGCAA---GCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTGAGCATTGTGATCGCAGCCATGAGGAAGGCGG
s HiC_scaffold_1 128084438 299 + 233722169 GGCAGCCAGTGAAGAGCACCAGCCATGGCTCTGCACTATCCCATGACCGCGGGCCTTCACACTGGCCGCAAGGTGGAAAGTATGAGGTATAGCTGCCATTTACCAAGGTatagctgctgctgctggtgcctCACCAAGCACATGAAGCCTCTGGGGGACGTGATCTGGGAGGTGTGAG--------------------------------CTGCTCAAGGCCTCCAAGGACAGGCGGTCCCTCCGGTTTGTCAAGAA---ATTGGGGATGCACATCCATGCCAAGAGGAAATGCAAGGAGCTGAGCAGCATGCTGGCTGCCATGGGGAAAGCAG

a score=13754
s chr3           100008335 381 + 160039680 GGCCGCCATTGGAGAGCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTG------ATGAAGAACATCAGCAA---GCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTGAGCATTGTGATCGCAGCCATGAGGAAGGCGGTGCCCAAGAAAGATTGATGAACCCTCCCCC------AATAAAGATCGTTCCTACAaaagaaa
s HiC_scaffold_1 128490265 365 + 233722169 GGCAGCCAGTGTAGAGCAGCAGCCATGGCTCTGCACTATCCCATGACCACAGGCCTCAACACTGGCCACAAGGTGGAAAGTGTGAGGTATAGCTGCTGTTTACCAAAATATAGCTGCTGCCGCTGGTGCCTCACCAAGCACATGAAGCCTCTGGGGGATGCGATCCGGGAGGTGT----------------------GTGCACCATGGAGCTGCTCAAGGCCTCCAAGGACAGGCGGGCCCTCCAGTTTGTCAAGAA---ATTGGGGATGCACATCCATGCTAAGAGGAAATGCAAGGAGCTGAGCAGCATGCTGGCTGTCATGGGGAAAGCAG----CCGCAAGGACTGAGTCCCTCTCCTCTGTGCAGAGTGAag--cttttctggaaaaaaaa

a score=11999
s chr3           100008335 325 + 160039680 GGCCGCCATTGGAGAGCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTG------ATGAAGAACATCAGCAA---GCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTGAGCATTGTGATCGCAGCCATGAGGAAGGCGG
s HiC_scaffold_1 128269816 305 + 233722169 GGCAGTCAGTGAAGAGCAGCAGCCATGGCTCTGCACTATCCCATGACCACAGGCCTCGACACTGGCCACAAGGTGGAAAGTGTGAGGTATAGCTGCTGTTTACCAAGGTATAGCTGCTGCCGCTGGTGCCTCACCAAACACATGAAGCCTCTGGGGGATGTGATCTGGGAGATGT----------------------GTGCACCATGGAGCTGCTCAAGGCCTCCAAGGACAGGCAGGCCCTCCAGTTTGTC------AGAATTGGGATGCACATCCATGCTAAGAGGAAAT-GCAAGAGCTGAGCAGCATGCTGGCTGCCATGGGGTAAGCAG

a score=15843
s chr3           100008350 320 + 160039680 GCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTGATGAAGAACATCAGCAAGCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTG--AGCATTGTGATCGCAGCCATGAGGAAGGCGGTGCCCAAGAA
s HiC_scaffold_1 195494998 313 + 233722169 GCAGCAGCCATGGCCCTGCGCTACCCCATGGCCGTGGGCCTCAACAAGAGCCACA-GGTGACGAAGAACGGGAGCAAACCGAGGCACAGTTGCTGCTGCAG-CGCCTTACCAAGCACACCAAGTTCGTGCGGGACGTGATCCAGGAGGTGTGCGGCTTCAGGCCCCACGAGCGGCGTGCTGTCAAGCTGCTGAAGGTCTCCAAGGACAAGTGGGCCCTCAAGTTCATTGAGAAAAGGGTGGG-GCGCACATCCGCTCCAGGGGGAAGCTTGAGTTGCTGACAGCGTTG-----GCA-CCATGCGGAAGGCGGCCACCACGGA

a score=9462
s chr3           100078429 219 + 160039680 TTTTTAAACAGACCTAATTCACTTCATATAGCT---GTAAAAACCCCATATGTAGT---CACAGCTGGAGTCTGGGTCCATGGAATATACACTCTAGTGTGGGATTTCATAAGATGGTCAGGGAATTCCTGATAAGGAGACTTGGTGAAAATAGTCTCTTTTCAGAGGTCAGGTGTC----AGGTAGCTGTGTCTCTTGAAGATGACATCAAAGGTAGTATTGGCTAAA
s HiC_scaffold_1  23605987 225 + 233722169 ttttttttcagatttcattcattttatttttcttgtgtaaaAACCCT-TATGTTGTACCTACCGCTGGAGCTTGAGTCCTTTGATCAGAGACT--AGTGTGGGTTTTCACAAGACAGTCAGTGAATTCCTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCTAGAGGTCAGGAGTCATGTAGGTAACTGTAGGTCTTAGAGATGGCATCAAAGGT-GCCTTAGCAAAA

a score=9225
s chr3           100078429 218 + 160039680 TTTTTAAACAGACCTAATTCACTTCATATAGCTGTAAAAACCCCATAT-GTAGTCACAGCTGGAGTCTGGGTCCATGGAATATACACTCTAGTGTGGGATTTCATAAGATGGTCAGGGAATTCCTGATAAGGAGACTTGGTGAAAATAGTCTCTTTTCAGAGGTCAGGTGTCAGGTAGCTGTGTCTCTTGAAGATGACATCAAAGGTAGTATTGGCTAA
s HiC_scaffold_1 178178365 195 + 233722169 ttttttaacagatttcGTTCACTTTTTCTTG-TGTAAAAACCCTATGTTGGAGATACTGTTggagcttgttttttt-----------------------ttttacaagatgGTCAGTGAATTCCTGGTAAGGAGACTTGGTGAACATAGTCTCTTTCCAGAGGTCAGGGATCAGGTAACTGTAGGTCTTGGAGATGGCACCCAAGGTGGCCTTGGTGAA

a score=9972
s chr3           100078461 186 + 160039680 TGTAAAAACCCC-ATAT-GTAGTCACAGCTGGAGTCTGGGTCCATGGAATATACACTCTAGTGTGGGATTTCATAAGATGGTCAGGGAATTCCTGATAAGGAGACTTGGTGAAAATAGTCTCTTTTCAGAGGTCAGGTGTCAGGTAGCTGTGTCTCTTGAAGATGACATCAAAGGTAGTATTGGCTAA
s HiC_scaffold_1   1550018 188 + 233722169 tgtaAAAACCCTTATGTTGTAGCTACTGTTGGAGCTTGAATCCTTTGGATGGAGACTCTAGTGTGAGTTTTTTCAAGATGGTGGGTGAATTCTTGGTAGGGAGACTTTGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTCAGGTAGCTGTAGGTCTTGGAGATGGCGTCAAAGGTGGCCTTAGCAAA

a score=9389
s chr3           101018547 448 + 160039680 ACAGGTTCCCTGAGAAGATAATTACCTGCCGGCTGGAT--------------CCTCAGAGCTGTTTGATCTGTCTGCTTTCTTGTGATCAAAGTCCACGTTTCATCTGGATCCTGAATCCATTCTGTGGCCTCACAGAACACCTGGCCCTGATCTGAGGGCTGGAGCTTGCCTACAGACAGCCTGAAGGAAGTGGCTCCAAGCTTGTCCAGCCGTACATCACCGGCCACAAAC-CTGTCT----GCATAGGAGGACCCAGGGGTCAATACAAAGTCCTTGGAGAGAGAAACGATCTCAGTGGCTTGGCTCCCTCCTCCTTCCTGCATCAGGTACCAGGTGAGAGAGAGATGGGTGTGTTGCACGGTGGCTTTGGTTGTCTCACAGGTGAGTTCCAAGGGCTCACCTTCCTTCTTACTGAGCGTCTGGGAGGGCATGGTGGCAGACAGGGTGTCGGGAACCACTGGAA
s HiC_scaffold_1 122292916 437 + 233722169 ACAAGTTC-----GAGGAGACTGACCAGTGGGCTGTATGTTGACCACAGCACCCTCAGAGC--------------GCTTCCGGGTCATGGCATACCACGACCCATCAGGATCCTGGATCCACTCCGCGGCCTCACAATAGAACTCGCCCTGGTCAGAAGGCTGTAGGTGAAAGATGGTGAGACGGAAGGTGGTCCTCCCCAGCTTGTCCAGCCGCACTTCTCC-----CAGGCTCTGTCTCAGGGCATATTCGCTGCTGGACTGCAGCACGAAGTCCCGGCTCAGGGAAATGACTTCCACAG---GCTTCTCGCCACCTTTCTG---CCGGAGCCAGGCCACAGACAGGTGACTGTGCTGGAACGTTTCTGTGACCACCTCGCAGCTGAGCTCCAGCGGGTCCTGCTCCACTTTGTGCAGAGTCTGGGGCACTGCAGTGGTCTGCAGGGAGTCTGGGATCACTGAAA

a score=15101
s chr3           101020346 353 + 160039680 CTCACCAGTAAGATTTGTCTTTGCACTGTAACTTCCAAAGTACTTCCCATCCGTGTTGGGTGTGTGGCACTCGTACTCGCCAGCATCTTTCATCTGGAGTTTTGAGATATGCAGCAGGACCGAGTCACCCTGCAGCCTCTCTATGTAGATCTCCTTGCTTTGCACCCTCTGGGCATACACTGCGTAAGAGAAGCCGGCATCCTTGGTACTGATGATCTGGACTTCCTTGGTCGGGGCGCTTGGCAGGTAAATAGACCACCGGAAATCCTGCGTGGAAGGACCCTGATGACCACTTACGGTGCACCTGATGCTGACAGGGTAACCTTCGGCTCTGTACAGAGGGCCTTCTTGAA
s HiC_scaffold_1 122295360 353 + 233722169 CTTACCCGCTAGGTTCATCTTTGCACTGTAACTCCCAAAGTACCGCTCGTCAGTGTTGGGCGTGTGGCATTCATACTCCCCTGCGTCCCGGGCTTGGAGATCTGTGATGTGCAATAAAGCTGAATTGCCTTGGATCCTCTCCACGTAGATCTTCCCACTGCGGACACGCTGGGTGTAGATTGCATACGGGAAGGAAGAGTCCATGGTGCTGACAATCTGCACCTCGCGCTCAGGGGCAGAGGGCAGATAAATGGACCACTGGAATTGCTGCTCTGATGGTCCCTGGTAGCCACTCACATTGCACCAGATGGTGATGTGGGAGCCCTCTGTGCGATACAAGGGTCCTTCCTGGA

a score=3755
s chr3           101164057 62 + 160039680 TCTGAATGAGACATGGAATACCTCACCTGTCAGAAGCCAGACAGAGCATTTGAGATGCAAAC
s HiC_scaffold_1 122549519 62 + 233722169 TCAAAATAAGACGTGGAATTTCTCATCTGCTAGAAACTAGACAGGGCTTTTGAGAAGCAAAC

a score=35260
s chr3           101233375 724 + 160039680 CCTTCTCTGCCGGCTACCCCACCATCAC------CACCAGCTCAGCTCTCTTTTGCTGTCAGGCTAGCT---CCGCTGTCCCC----AGCCATCACCATGATCATCTACAGGGATCTTATCAGCCATG---------------------------------------------------------------GTCATTAGAACAGAGGGTGCCATTGATGACTCACTCATTGATGGAAATGCTTCCGCCAAAGGCCCGGAGGGTGAAGGTACCCAAAGCACTGTTGTCACCAGTGTTGACATTGTCATGAGCCATCATCACTTATAAGAAACCAGCTTCACAAAAGAGGCCCATAAAAAGTACATCAAAGACTACATGAAATCACTCAAAGGCAAACTTCAAGAACAGGAACCGGAAAGAGTCGAGCTTTTTATGACTGGAGCTGTGGAGCAAATTAAGCACATTCAGGCTAATTTCAGTAGCTATCAGTTTTTTATTAGTGAAAGCATGAATCCATATGGTATGGTTGTTCTCCTGGACTACCGTGGAGATGGTGTGACTCCATTCATGATTTTCTTTAAAGATGGCTTAGAGATGGAAAAATGTTAACAAA-------------TTGGATCTATCGC-TGTCACCGTAATTGGCTGCTGCTTACCATCCATACAACACCAGGACTTAGGACAAATGGGACTGATGTCATCTTGAG-----CTTTTATTTTGACCATGATTTATTTGGAGCGGAGGCATTGTTTTTTAAGGGAAAAA-AAATGTCATGTGGGTTGTCTAAAAAAAAAATGCATTCAAATT
s HiC_scaffold_1 122517027 803 + 233722169 CCTCCTTTGAGTGCTACTCCAGCAGCACTGTGCTCACT--CTGAGCTCCTTGTGCCTGCTAAGCTGGCGTGGCCACCGTCTCCCTTCAGCCACCATCACAATTATCTATCGGGACCTCATCATCCACGTTGAGTAGATATTCTCCCACATTCACAAGATCCAGGAGCTCGTGGAAGGTGGAGGCCAAGACGGTCAGTAGAACAGAGGGTAACACTGGTGACTTGCTCATTGGTGGAAATGCTTCCCCTGAAGACCCAGAGTGTGAAGGCACACAA-GCACTGTAGTCACTGGTGCTCATACTGTCATGAGCCATCA---CTTGCAGGAAGCCAGCTTCACAGAAGAGGCCCACAAGAAATGCCTCGAAGATTATATGAAATCAATCAAAGGCAAATTT---GAACAAAGACCAAAAAGAGTAAAACTGTTTGCGACAGGGGCTGCAGAACAAATCAGGCACATCCTTGTTAATTTCAAAAACTATCAGTGCTCTACTGGTACAAGCATGAATCCAGATGGCATGGTTGTTCTCCCGGACTACCATGAGGATGGTGTGACCTCATTTATAATTCTCTTTAAGGATGATTTAGAAGTGGAAAAATGTTAATGGATTTGGTGGTTACCTTGGGTCTTTCACTTGTCA-------TAACCGCTGCTTGTCATCCACACAACACCAGAATTTTAAACAAACGCAACTGATGTCATTTTGAATGCATCACTTATTTTGA-CATGATTTATTTGAAGTGGAGGCATTGttttttagggaaaaaacacATGTCATGTAGGTTGTCTAAAAATACAGTGCATTTAAACT

a score=16170
s chr3           101233487 659 + 160039680 ATGGTCATTAGAACAGAGGGTGCCATTGATGACTCACTCATTGATGGAAATGCTTCCGCCAAAGGCCCGGAGGGTGAAGGTACCCAAAGCACTGTTGTCACCAGTGTTGACATTGTCATGAGCCATCATCACTTATAAGAAACCAGCTTCACAAAAGAGGCCCATAAAAAGTACATCAAAGACTACATGAAATCACTCAAAGGCAAACTTCAAGAACAGGAAC----CGGAAAGAGTCGAGCTTTTTATGACT-------------------------------GGA----GCTGTGGAGCAAA--------TTAAGCACATTCAG-------GCTAATTTCAGTAGCT------------------ATCAGTTTTTTATTAGTGAAAGCATGAATCCATATGGTATGGTTGTTCTCCTGGACTACCGTGGAGATGGTGTGACTCCATTCATGATTTTCTTTAAAGATGGCTTAGAGATGGAAAAATGTTAACAAA-------------TTGGATCTATCGCTGTCACCGTAATTGGCTGCTGCTTACCATCCATACAACACCAGGACTTAGGACAAATGGGACTGATGTCATCTTGAGCT-----TTTATTTTGACCATGATTTA-TTTGGAGCGGAGGCATTGTTTT----TTAAGGGAAAAAAAATGTCATGTGGGTTGTCTAAAAAAAA---------AATGCATTCAAATTA---AAAAAATAAATAA-AGAAAAGAAACTATTTGAGATATGGCTAACAGG
s HiC_scaffold_1  22004991 725 + 233722169 ATGGTTCATAGGACAGAGGGTAACATTGGTGACTGCCTCATTGGTGGAAATACCTCCCGTGGAGGACACAAGAGCAAAAGTATATAAAGAATAGTAATGACTGGCAGTGATACTGTCATGG---------------AAGAAATCAGCTTCACAAAAGAAACTTATAagcaatatattaaaaattacatgaaatcaGTGAAAGGAAAGCTTTGAGGACAGAGACTACACTgccagaattttaatttttttaatttttgattttatttttactttagtcCTTCACAGGGTCTTGCTTAGTTGCCAACACTGGCCTCAAAAACGTACAGTTGTTGTGCCACAACAAATAGCTAGGCATGCTGTGATGAAAATTCTTTCTTTAGGGATGAAAATGTGAACTCACATAGCAGGACTGTACTTCTGGACTACTATAGAGATAGCATGAGagcatatat-atgtttttaaaggaTGGTTTAGAAATTGAAAAATGTTAACAAATTTGAGAATGACTTTGGATCTATCTC-ATCATCATAACTTGCTACTATCTGTCATTCACACAGAACCAGGG-----------------------CATAttaaacttttcatttattttgaccaCGATGTATTTTGGAGCGAAGGCATTGTCTTGCTATTAA--GAAAAACAGTATCATATAGGTTTTATGTGAAGAATTGTGTATGTATGAATGTGTGTTATCTCAACATTAAATAATAGAGACCAGAACATTAGAAAAATGGGGAACAAG

a score=27060
s chr3           101233487 612 + 160039680 ATGGTCATTAGAACAGAGGGTGCCATTGATGACTCACTCATTGATGGAAATGCTTCCGCCAAAGGCCCGGAGGGTGAAGGTACCCAAAGCACTGTTGTCACCAGTGTTGACATTGTCATGAGCCATCATCACTTATAAGAAACCAGCTTCACAAAAGAGGCCCATAAAAAGTACATCAAAGACTACATGAAATCACTCAAAGGCAAACTTCAAGAACAGGAACCGGAAAGAGTCGAGCTTTTTATGACTGGAGCTGTGGAGCAAATTAAGCACATTCAGGCTAATTTCAGTAGCTATCAGTTTTTTATTAGTGAAAGCATGAATCCATATGGTATGGTTGTTCTCCTGGACTACCGTGGAGATGGTGTGACTCCATTCATGATTTTCTTTAAAGATGGCTTAGAGATGGAAAAATGTTAACAAA-------------TTGGATCTATCGCTGTCACCGTAATTGGCTGCTGCTTACCATCCATACAACACCAGGACTTAGGACAAATGGGACTGATGTCATCTTGAG-----CTTTTATTTTGACCATGATTTATTTGGAGCGGAGGCATTGTTTTTTAAGGGAAAAAAAATGTCATGTGGGTTGTCTAAAAAAAAAATGCATTCAAATT
s HiC_scaffold_1  35218879 601 + 233722169 ATGGTCAGTAGAACAGAGGGGAACATCTGTGACTCACTCATTGGTGGAAATGCTTCCACAGAAGGCCCAGAGGGCACAGGCA--------------GTCACTGGTGTTTATTGTGT------GCACCATCACTAACAGGAAACCAGCTTCAC--CAGAGACCTTCGAGAAGTACATCACAGATT-TACAAAATCAACCCAAGGCAAACTTGAAGGACAAAGACCAGAAAGAG-CAAGACCATTACAGCAGGGGC-GCAGAACAAATCAAGCACATCCTTGCTAATTTCAAAAACCATCAGCTCTTCACTGGTGCAAACAGGAAT-CAGATGGTGTGACAGCTATCCTGGTCTCCCATGAGGATGGTGTGACCCTGTGTATGGTTTTCTTTAAGGATGGCTTAGAACTGGAAAAACGTTCATGGATTCGGCAGTGACCTTGGCTCTATCAC--TTGTCCTAACTGGCTGCTGCTTGTCGTCCACATAGCATGGGAATTTTAGACAAATGGGACTGATGTCATTACGAGTGCTTTGTTTATTTTGACCATGATCTGTTTGGATTGGAGGca-tattttttaggaaaaaacacaCATCATGTAGGTTGTCTAAAAATAAAGTGTGTTGAAACT

a score=13591
s chr3           101233487 345 + 160039680 ATGGTCATTAGAACAGAGGGTGCCATTGATGACTCACTCATTGATGGAAATGCTTCCGCCAAAGGCCCGGAGGGTGAAGGTA-----------------------CCCA--------------------------------------AAGCACTGTTGTCACCAGTGTTGACATTGTCATGAGCCATCATCACTTATAAGAAACCAGCTTCACAAAAGAGGCCCATAAAAAGTACATCAAAGACTACATGAAATCACTCAAAGGCAAACTTCAAGAACAGGAACCGGAAAGAGTCGAGCTTTTTATGACTGGAGCTGTGGAGCAAATTAAGCACATTCAGGCTAATTTCAGTAGCTATCAGTTTTTTATTAGTGAAAGCATGAATCCAT---ATGGTATGGTTGTTCTC
s HiC_scaffold_1 227202317 402 + 233722169 ATGGTCAGTAGAACAGAGGGTAACACTGATAACTTGCTCATTGGTAGAAATGCCTCTGATAA-GGCCAGGAGAACGAAGGCATTGAAAGCACAGTGGCCTTGAGCCCCACGTtgggcaccaaaaaaataaaaataaaaattaaaagaaagcacAGTGGTCACCGGCATTGATATTGTCACAAACCATCA---CTTTCAGGAAACCAGCTTCATGAAAGAGTCCTACAGGAAGTGTATCAAAGATTATATGAAATCAATCAAAGGCAAACTTGAATAACAAAGACCAgaaagagtaaaatcatttttgaCAG--GCTACAGATCAAATCAAGCACATCTTTGCTAATTTTGAAAACTATCTGTTCTTgctttat-aatgtttgcattcattagttggaatggttttattc

a score=25212
s chr3           101233487 620 + 160039680 ATGGTCATTAGAACAGAGGGTGCCATTGATGACTCACTCATTGATGGAAATGCTTCCGCCAAAGGCCCGGAGGGTGAAGGTACCCAAAGCACTGTTGTCACCAGTGTTGACATTGTCATGAGCCATCATCACTTATAAGAAACCAGCTTCA-----------------------------------------------------------------------------------CAAAAGAGGCCCATAAAAAGTACATCAAA----GACTACATGAAATCACTCAAAGGCAAACTTCAAGAACAGGAACCGGAAAGAGTCGAGCTTTTTATGACTGGAGCTGTGGAGCAAATTAAGCACATTCAGGCTAATTTCAGTAGCTATCAGTTTTTTATTAGTGAAAGCATGAATCCATATGGTATGGTTGTTCTCCTGGACTACCGTGGAGATGGTGTGACTCCATTCATGATTTTCTTTAAAGATGGCTT-AGAGATGGAAAAATGTTAACAAA-------------TTGGATCTATCGCTGTCACCGTAATTGGCTGCTGCTTACCATCCATACAACACCAGGA-CTTAGGACAAATGGGACTGATGTCATCTTGAGC-TTTTATTTTGACCATGATTTATTTGGAGCGGAGGCATTGTTTTTTAAGGGAAAAA-AAATGTCATGTGGGTTGTCTAAAAAAAAAATGCATTCAAA-----TTAAAAAAAT
s HiC_scaffold_1  92614075 690 + 233722169 ATGGTCAGTAGAACAGAGGGTA--ACTGAGGACTGGCTCACTGGTGGAAATGCCTCCGCTAT-GACCCGGAGTGGGAAGGTCCCACAAGCACTGCAGTCATTGAT-------TTGTCATGAACCATCA---CTTGCAATAAACCAgcttcaagggctggggatttagctgagcggtataagtgcctgccttgcaagcaggcagtcgtgagtttgatccctggtaccgataaaaacaaaaaagacaaaaaaaaaaaaaaaaaaaaaaagattatatgaaatca---------aaacttgaaaaacaaaggCCAGAAAGAGTAAAACCGTTTATGACAGAGGCTGCAGAACAAATCAAGCGCATCTTTGCTAATTTCAAAAACTATCAGTTCTTTATTGGTGCAAACACGAATCCAGATGGCATGGCTGTTCTCCGAGACTACCGTGAGGCTTGTGTGACCCcatttatgattttctttaagGATGGTTTAAGAAGTGGAAAAGTGTTAATGGATTTGGTAGTTACCTTGGATCTATCAT--TTGGCATAA----CTGCTGCTTGTCATCCATACAGAACtaagatttttaaacaaatgggACTGATGTCATCTTGAATGCTTTATTTTGGCA-----------GGAGAGGAGGTATTGTCTTTTAGGGAAAAAACACATGTCATGTAGGTTATCTAAAAATAAAGTGCATTTAAACTCATTTGAAAGAAT

a score=17225
s chr3           101233778 321 + 160039680 AGCTATCAGTTTTTTATTAGTGAAAGCATGAATCCATATGGTATGGTTGTTCTCCTGGACTACCGTGGAGATGGTGTGACTCCATTCATGATTTTCTTTAAAGATGGCTTAGAGATGG-AAAAATGTTAA-------------CAAATTGGATCTATCGC-TGTCACCGTAATTGGCTGCTGCTTACCATCCATACAA--CACCAGGACTTAGGACAAATGGGACTGATGTCATCTTGAG-----CTTTTATTTTGACCATGATTTATTTGGAGCGGAGGCATTGTTTTTTAAGGGAAAAA-AAATGTCATGTGGGTTGTCTAAAAAAAAAATGCATTCAAATT
s HiC_scaffold_1 227203194 341 + 233722169 aactatcagTTTTTAATTGGTGCAAACATGAATACAGATGGCACAGGTGCTCTCCTAGACTACCGTGAGGATGGTGTGATCtcatttatgattttctttaagGATGacttagaaatggaaaaaatgttaaTGGATTTGGTGATTACATTGGGTCTATCACTTGTCAC---AACTAGTTGCTGCTTGTCATCCAATCCATGCACCAGGATTTTAGACAAATGGGACTGATGTCATCTTgaatgctttttttattttgactgtgaTTTATTTGGAATAGAGGCATGATTTTTTAGGTAAAAAACACATGTCCTGTAGATCGTATAAAAATAAAGTGTGTTAAAACT

a score=10120
s chr3           101355799 475 + 160039680 TTTTGGTGTAACCTCTTGCAGAAGGTCCCAACAGACCAGGCTAAAAATAAAAACC-AGTCGTTTAAAATGAAGTTCCGCGTCACCAAAGTGAGACTAAGCTGTTTATCTGACCTTGTCAGGAATCAGGGCGACAGAGATGATAGCTTG------CAAACA-GCCAGGTTCAGGCAGCAGAATAATGAAGGCTACTGTGCCCTAATCCGAAAAACCCCCTTACCTCCAAAGT-ACCTGAAGTTAAGGAGTCCCTTATTTTTCTGTTGCTTTGTCTCTCATCCCTGCCTTACATGGCCAGGGCTTTGGAACA---GCCCATCTGCCTTCTGTGCTTTGTT-TCTGCTTTCTCCTGCC-TTTTCTTTCTAGGAAACCGAGCTCATCCGCCCAGTCCCTTGGAACA--CAGTCTACTCTGTGCAGCAAAG--GTGCCTGAAACTAGAATCACAAAGCAAAG----AGAAGGCTTTCGATTTG---CTTCG----ATTTTGTCCTCTGA
s HiC_scaffold_1  83819987 482 + 233722169 TTTTGAACTAAACTCCTGCCCTGGGCACCAACAGGCAGggctaaaaatcaaaatagagtcaCTCACACTGAAGTTCCACATCACCAGCCTGAAACTAAGCTGTTTATCTGACTTTCCAAGAAATCAGGATTAGAGAGATAGCAGCCAAATTCGCCAAACAGGCCCATTTCAATTGACACGAT----AAAGTCCTTCTGCAGTAAccctaatacacac----acacaaaagtgacCTGAAGTTAGCTAATcaattatgtttctgttgcat---------gcCCTGCTTTACAGGG---GAGTTTTGAAAtaattgcttttttgtatttt-tatattgttgtCTGTTCCCTTCAGTCATTTGCTGTCCATAAAATGAAACTCTTGTGCTCAGCTCAATGGCACACTCATTCTAGTTTATGAAATGAAGCATAGCTTGATTCTAGAACCA-AAAGTAAAGCCAAAGacaacttttaaattaaatttttgtaactttttgtcCTTTGA

a score=4440
s chr3           101355821 135 + 160039680 AGGTCCCAACAGACCAGGCTAAAAATAAAAACCAGTCGTTTAAAATGAAGTTCCGCGTCACCAAAGTGAGACTAAGCTGTTTATCTGACCTTGTCAGGAATCAGG-GCGACAGAGATGATAGCTTGCAAACAGCCA
s HiC_scaffold_1  44221910 135 + 233722169 AGGCCCCAAGACACCAGAGCAAAT-CAGAGTGCAGTTCCTAGTAGTGAAGTTCTACATCACCAGGATAAAACTAAGTTGTTTATCTGACCTTTTGGGAAATAAGGAGAGTGAAAGATACTGGCTGGGTAATAGCTA

a score=5568
s chr3           101355889 388 + 160039680 AGACTAAGCTGTT-TATCTGACCTTGTCAGGAATCAGG--------GCGACAGAGATGATAGCTTGCAAACAGCCAGGTTCAGGCAGCAGAATAATGAAGGCTACTGTGCCCTAATCCGAAAAACCCCCTTACCTCCAAAGTA-CCTGAAGTTAAGGAGTCCCTTATTTTTCTGTTGCTTTGTCTCTCATCCCTGCCTTACATGGCCAGGGCTTTGGAACAGCCCATCTGCCTTCTGTGCTTTGTTTCTGCTTTCTCCTGCCTTTTCTTTCTAGGAAACCGAGCTCATCCGCCCAGTCCCTTGGAACAC--AGTCTACTCTGTGCAGCAAA--GGTGCCTGAAACTAGAAT----CACAAAGCAAAGAGAAGGCTTTCGATTTGCTTCGATTTTGTCCTCTGACAA
s HiC_scaffold_1 206461476 360 + 233722169 AGTCAAAACTGTTCTATCCGACCTTCTCAGAAACCAGGAGAAATGGGAGACGACAAGGGCATTTCCCAAATGGACAGTTTCTACTGGCAG--------------------------------------------CCCGAAGTGGCCCAATATTAATCAATCAGTTACCAATCTGTTCTTCCATCTCCTGTCCCTTCTTAGGAGGAAAGTTGCTTTTAGATGACCAATTAGCTTTGGGT-TTTGGTTCCTGCTTTCTTCGGCCTTTTCTGTCTGTGAAACCAACCTCCTCTGCTCAACTGGTTGGAATACTTACTCTAGATTATAGATTGAAGTGTTGCCCAGTTCTAGAATTGAACATAAAGCCATCCTAAGG-TTGGAAATTGTTGTAACTTTGTCCTTTGAGAA

a score=16207
s chr3           101425459 374 + 160039680 CAGCGCAGCGACAGGTCACCGTCCAGGAAGGGCCCTTGTACCGCACAGAGAGCTCCCACATCACCATCTGGTGCAACGTGAGTGGCTACCAGGGTCCCTCTGAGCAGAACTTCCAGTGGTCCATTTACCTGCCCTCTGCTCCTGAGCGTGAAGTACAGATCGTTAGCACGGTGGACTCTTCCTTCCCGTACGCCATCTACACCCAGCGAGTCCGCGGTGGGAAGATCTACGTGGAGAGGATCCAGGGCAACTCAGCCTTACTTCACATCACAGACCTGCAAGCCCGGGATGCCGGCGAGTATGAATGTCACACCCCCAACACCGATGAGCGCTACTTTGGGAGTTACAGTGCCAAGATGAACCTAGTGGGTAAG
s HiC_scaffold_1 122693242 374 + 233722169 CAGGCCAGAGAGAAGTAACAGTTCAAAAAGGACCGTTGTATAGAGCTGAAGGTTATGCTGTCAGCATTGGCTGCAATGTAACTGGCCACCAGGGACCTTCTGAGCAGCACTTCCAGTGGTCTATTTACCTGCCCACAGCCCCAACCAGGGAGATACAGATCGTTAGCACCAAGGATGCTGCCTTCTCTTACGCAGTATATGCACAGCGGGTGCAAAGCAGAGACATCTACATAGAGAGGGTACAGGGAAATGCAGTCTTTTTGCACATCTCAAAGCTCCAGAAGAAGGATGCTGGCGAGTACGAGTGTCACACGCTGAACACGGATGAAAAATACTACGGAAGTTACAGTGCGAAGACTAATCTAACTGGTAAG

a score=10287
s chr3           101427022 427 + 160039680 TTTACAGTGATCCCAGATTCTCTGCAGACCACGGCTGTCCCCCAGACACTGCACAAAGTGGAACAGGATCCCCTGGAGCTCAGCTGCGAAGTGGCCACCGAGACCGTCCAGCACACCCACCTCTCGGTATCCTGGC------TGCGGCAGAAGGGTGGCGAGAACCCTGTGGAGGTCATTTCCCTGAGCCGAGACTTCATCCTGCACTCCAGCAGCGAATATGCCCAGAGGCAGAGCCTGGGCGAGGTGCGGCTGGACAAGCTGGGGAGAAGCACCTTTCGTCTCACCATCTTCCACCTGCAGCCTTCCGACCAGGGCGAGTTCTACTGCGAGGCTGCGGAGTGGATCCAGGATCCAGATGGCTCTTGGTACGCCATGACCAGGAAGCGCTCCGAGGGTGCCGTGGTCAACGTCCAGCCCACTGGTCAGTGTC
s HiC_scaffold_1 122695726 433 + 233722169 TTTTCAGTTATTCCAGATACTCTCTCTGCCACCATGCCTTCCCACACTCTGAGTAAGGAGGAAGGTGAACCATTAGAACTTACCTGCGAAGTGTCCAAAGCCACAGCTCAACATACTCACCTCTCTGTCACCTGGTACCTGACACAGCAAGGAGGAAGCAGCCAGCCCACCAAGATTATTTCCCTCTCCAGAGATTTTACGTTGACCCCTGGGGCTTCATATGCAGAGAGGTTTGCAGCTGGTGATGTGCAACTCAGCAAGCTTGGGGTCACTACCTTCAAGCTCTCCATAGGCAGGCTCCAGCCCTCAGATCAAGGCCAGCTGTTCTGTGAGGCAGCTGAATGGATTCAGGATCCAGATGAAACCTGGATTTCCAtcacaaaaaagcaaacagatcAAACAACGCTGAGAGTCCAGCCAGCAGGTAATTATC

a score=3826
s chr3           101451170 141 + 160039680 GAGGTCAGCGACAGCGGTAGCTACTACTGCCACGTGGAGGAGTGGCTGCTGAGTCCCAACTATGCCTGGTACAAGCTGGCCGAGGAGGTTTCAGGGCGCACAGAGGTCACTGTGAAGCAGCCAGGTAAGAATGGAAGGTGT
s HiC_scaffold_1 122715367 141 + 233722169 GAAGACAGCGATCAGGGTGTGTACTACTGTGCTGTGGAAGAATGGCTGCTGTTTACAAATGGCACTTGGCAGAAGCTTGGAGGAGCGAAGTCAGGACTGACAGAATTGAGACTCAAGCCCTCAGGTAAAATTTGCAAGTGT

a score=6358
s chr3           101502970 269 + 160039680 tgtaGGcacgcacatataaacacacacacacacacacacacacacaca-ATAAATCCTTAAAACAGGA------TAATGGATTGGAGGCTTAATCCCTAGCT-------------------TGTAGCAATACCATG------------------------AAGT-------AATCAGA---------TCTTTCGGGT--------ACAATCTTATCA--ATTAGTTAATTAATCTCTTGATGAGT-CATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATAGCATTTCCCTCAATGAACCCTT
s HiC_scaffold_1   9038740 342 + 233722169 tataaacacacacacacacacacacacacacacacacacacacacacacacaaataaacaatacAGAAGTTAAGTaataaattaaa---ctaaaatctagATCTGCAAAATCAAATTTTAGTATAGCA-TGCTATGGTTTGGACTTAAAATGTTCCTTCAAAGTCTTTTGCATTCAGAGGTGAGTTTTCTGACGAGTGGATCCTGAGAATCTTAGCCTCATGAAAAGATTCATCCATAGATGAGTACATAGATCAAGGGGCTGTTGGAAGGTGGGGTCTCCTTGGAGAAAGTGGGTCACTGGAGGCAAGCCTTTGAAGGATGTGGTATATCCTTTCGCAAATCTTT

a score=4363
s chr3           101503023 204 + 160039680 TCCTTAAAACAGGATAATGGATTGGAGGCTTAATCCCTAGCTTGTAGCAATACCATG---AAGTAATCAGATCTTTCGGGTAC-AATCTTATCAATTAGTTAATTAATCTCTTGATGAGT-CATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATAGCATTTCCCT
s HiC_scaffold_1 225011519 201 + 233722169 TCCTCAAAATA--CTCAGGTACTAAGGGCCTCGTCCCTAGTACAGAGGTGGAGCCTACAAAGGTGACCGGAGCATGGAGACACGAACCTTATCA----GTGGATTAACGCCCTGATGAATTCACAGTGGAATGG-CTATTAGAAGGTGGAGCCCAGCTGGAGGATGTGGGTCACTGAGAATGTGCCTTTG-AGGACAGAGCTTGTCCCT

a score=4310
s chr3           101503078 148 + 160039680 TGAAGTAATCAGATCTTTCGGGTAC-AATCTTATCAATTAGTTAATTAATCTCTTGATGAGT-CATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATAGCATTTCCC
s HiC_scaffold_1  31759355 145 + 233722169 taaAGTAATTATATTACCGAGATGCtaacttcattaaa-----atttaatcCACAGATGGGTTCATAGTTGAATGGGCGGCTAGGAAGTGGGACCTAATTGGAGGAAGCAGGTCACTAGGAGCAGCCCTTTGGGCGATATATCCTATCTC

a score=4795
s chr3           101503080 224 + 160039680 AAGTAATCAGATCTTTCGGGTACAATCTTATCAATTAGTTAATTAATCTCTTGATGAGTCATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATAGCATTTCCCTCAATGAACCCTTGGGCTCCTCTACCCCAGTCTCTCTCCCCTCTCATTTTCCTCTCTTGTTCTCTACC-------TTCCCCACAC
s HiC_scaffold_1  21620999 215 + 233722169 aggtgattggatcatggaggtgTTAT---AGTCATCAGTGAGTGAATCTGTTGATGATGCATAGCTAAATACGCTGTTGGTCGGTGGGACCTGGTTGGAAGATGTTGGTCACAGGTGGCATGACTTGGAAGGGTGTA------TCCTCA------TCTCtggctcttcccttccttctttgcttcctggatACCATCATC-CTTTTCCTCTACCACTGCTTTTCACCGCAC

a score=4513
s chr3           101503127 144 + 160039680 CTCTTGATGAGTCATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATAGCATTTCCCTCAATGAACCCTTGGGCTC---CTCTACCCCAGTCTCTCTCCCCTCTC
s HiC_scaffold_1   9460003 139 + 233722169 CTCCTGA--AGGTATAGCAGAATGGGCTGTTGGGAGGTGAGGCACAGTTGGAGGCAGCAGGTCCCTGGCTGTGAGCCTTTGATGAGTGCA----TTCTGTCTCCAGGTCCT--GGCTCTGGCTCTGCCATGTCCTCTCTGCTTACTC

a score=3844
s chr3           101503130 87 + 160039680 TTGATG-AGTCATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATA
s HiC_scaffold_1  33557502 88 + 233722169 TTGATGCATTCATGGCTGACTGGGCTGTTAGGAGGTAGCACCTGGTGGGAGGCAGTAGGTGGCTGGGAATGTGCCTTGGCAGGATATA

a score=6328
s chr3           101657152 581 + 160039680 TCTCTCTCTCCTCGGAAGCAACCTGGGGTGA---------CCAATGAAAATCATTCATGG-------------------CTCTGGATGTGGAAAACTCCTGCAAACCCATAGAAGCCAAGAGGTTCAAAC---TGTGTTC--TTTAAGAATGTCCGTGAAACTGCTCAAGTCATTAAGAGTTTGCATAGCCTACAAGCTAC-----ATCTGAAAAAATGTCACTGCAAAGA--CAGTGTGGGGTGGGGCCgccgtgtggtgtggcatgtgcctttaatcccagcaggatggaggcaga---gataggtggatctctgagtctgaggctagcctggtctacgtggtgaaagcctgactcaaagtgaaaataaCAGAGGGGACTTGCGTGGCTTTCTGGTGGTATAACTGAGGAGTTGCTAGGTGTGCTCAGACAGCGGGCTGAGCTCTTACTGCTTGTGTTTAAAA----AGAGAGTCATACTGAATTTAAGCATCTAGGTGCGGATTCTCGGGCTTTCCATATATCCAGCTCACCAAGGTGTCCAAGATACACCATCATTCTTAACTGAGATCATGGTTAGATGAGATCCCATGTCACATGGAGAGAACACTCAggtttgaataggaa
s HiC_scaffold_1 176819644 512 + 233722169 ttTTTGTCTTCATATAAACGGCCTGAAGTGAACTGTGAAACCAGTGAGGCTTCTCCCTGGTAAGTAGGGATTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCACCAAGTATCTG-AAGGGTGACTCTTGAAAGAAGCAGTGTGTG--------------------------------TCATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTG---------CTTAAGCCA-------------AATGAGGGCTAGACACAGGATTGAGA---------------------------------------------------------CCCCAAAAGAGTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAGACTCT-AGTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCTG-AGCTCGTGATCTAACTAATGAATACCTGAGTTCCCCTGCCACATGGAGATAATCCTTA--TTGAAAAAGGAA

a score=4245
s chr3           101872692 79 + 160039680 CAGTGCTGAAAGTTTTTGGATTTTGGAATATTTTAGATTTCAGTTTTTTGGATTAGGGATATTCAACTTATAATTATAA
s HiC_scaffold_1 211083304 79 + 233722169 CAGTGTTCAAGACTTTTACATTTTGGGGAATTTCAGACTGCAGACTTTTGGATTAGGGTTGTTCAACTTGTAGATATAA

a score=4866
s chr3           101896667 292 + 160039680 GCAGGCTGAGCACCCTCAAATCCGAAAACCCCCAATCCCAAATGTCCTAAATTGGAAACGGTTGTAGAGGTGACACAATTC-----------------CTCAAGTGGAAAAAAAAAAATCCATTCTTTACCTGGACATGACGGTTTGAACCCAAAATAGAGACATTAAAAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAA------------------GGCATTATGCAGAAGAATGTGGAATCCGGAACACTTCGGGTTCCCAGCA
s HiC_scaffold_1  51851153 301 + 233722169 GTGGACTGATTACCC----GGCTGAACAAGCCTAATCt-aaatttccaaaatgcaaaatttttcaaaatctgaCACATTTCAAGCTCCAAGATGATGACACAAGTGGAAAAC------CCCATACCATGC---AACTTTA---TTTcaac--aaaattg-----ttaaaaatcTAGCATAAAAGTACCTTCAAGCTACGTGTATAAAACATATATGAAACATAGATAAGTTTTATGTTTAGACTTTGATCCCATCCCTAATATGCGTATGCATAGTAtgtcattatgtatatgtaaGTAG--TCTAAAATAATTGAAGTCCCAAGTA

a score=3799
s chr3           101896818 97 + 160039680 AAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAGGCAT
s HiC_scaffold_1 151548696 96 + 233722169 AAATGCTGTA-GGATTTACCTGCAGCCTATGTATATATGGTGTACAGGAAACATAAGTGGATTCTGTGTTTATATTTAGGTCTCATCTCCAAGACAT

a score=4321
s chr3           102068204 106 + 160039680 GGTGAAGTTCACACTGGTACCTGTTTCCAGCTCTCCCACCCTGAACACCTCAGCACAGGCAAGGAAGATGTTGCCAATAATTAC-CCGTTGGCTCCTACACCATTGG
s HiC_scaffold_1    789893 107 + 233722169 GATGAAGTTCAGACAGGCATTTTCACCCTGTTCATCCACCCAGAGCAGCTCATCAAAGGCAAAGAAGATGCTGTCAATAACTGTGCCTGGGGCCCCTCTGCCACTGG

a score=11721
s chr3           102074871 496 + 160039680 TCGTTTGGAGGTGAGTTTCCTGCTTTTGATACAGGCTTCACTCCATTCAGGTCTCTAGGTCTTGGGGCTCTCACTTCCTTCTCTTCAGCATCATTTGGCAACAGT-GGAATGGGCAACTTCAAATCAATATCAACTTCAACTAAGATAGTTAGCAA----AAAATCACGATGAAGA----------GAAT---------------TGTGG---------------------------------------------------------------------------------------------AGAACCGTTAAGAAAGAGTAGAAGTTGAAGACAGACTGTTAAAGTCCTTGGCGATAAATGGTAAGGAGCACCTGCTACGCTTGGATAACAAGCAATTCAACGCACACATTTAACAGAAATGGTAAACCTTAGCAAGCACCATTTGAGG---AACAAGAACTTTTTTTCTTTTGAAGATTTCAAACGAACTCGACTTTCTGTATAACTGTACCAAATCCAAAGGATTTACAAAACAGCTCATGAGAGCCCCTATTTGTCATAGACGTTTGAGTTTGTTGTTGGGACCACAAAATAGGACTTTT------TTTTTCTTTAAAATCGT
s HiC_scaffold_1  26131197 587 + 233722169 TCCTTCAGGGataaattttctacttttaatataGGATTTACTTTATTTGGATCACAAGGCCTC----------CTTCAAGCTCTTCCAAGTCACTTGGCAGGAGCAGGAATGGGCAACTTCAA------------TTTTACTAAAATagttaatgacagaaaaataactataaaGAACCTTATCACGAATAACcaataaactgggtgtggtggctcacactcatggcagaaggactgccacaaattcaaggccagcctgcactgtataGCAAAAGCTTGtctcaggaaaacaaacaaacaaacaaaattgccAATAAAGAGTGCAAAGTGAAGACAG-CCACTAAAATCCTTAATAATAA-TGGTACAGAATCCCTACTATGCTCAGATAAAAAGTAATTCAGTGCATGCACCTACCGGAAATGTCAAACTATAGTAAGCACCATTTTAGGATTAACAGTAACACT-----TTTTGAAGATTTCAAATGAATTCAGTGTCTAATATACTTATAC-----CTAAGGTAATTACAG------TTACCAGAATCCCTATTGGTCACACAC-TATTAGTCTACTGCTGGAGCCACATAATAAtacctttttaaacttttattctaAAACTGT

a score=4127
s chr3           102251470 129 + 160039680 CCTCATAAAGATTCCCCCGTCTCTCACTATTACCACACCCGGACCAAGCCTCTAGTTCATAGACATTTAGAGGACGTTCTCCAGCCACAGTCACATTAGAGCTGACTCTCCAGGACAAAGGTGAAGTGA
s HiC_scaffold_1 132204979 122 + 233722169 CTTCTTAAAGGTTCTGTCATCTCTTGGCACCATCACACTGGGACCCAGCTTCCAGAACATGAACCTGTGGGGGACGTACTCAAGCCA----TACACCATAAC---CATACCAGGACTGAAGCGAAGTGA

a score=12937
s chr3           102880755 424 + 160039680 GCATCTCCCATGCCTGCA--GCCACAA--TGCCCAAGTGGAAAGTTAGCATGGATAGAGCAATGAAGGCTGAGCCCAAGCACCCCTCCCTGAGGCTGTTGACCAAGCCTGCCCCAGCAAAGGTTGACAGGAAGCCAGAAAAAG--GCCATGGGAAAGGATAAAGATTCAGGCAAAAAAGTGCAGATAAAAGGGAAGAGGGGAGCAAAGGCAAACAGGCTAAAGTGGCTGACCAGCAAACTACAGATCTGCCTGCAGAAAATGGAG-----ACAGAACACCAGAGTCCAGCCTCTGA------AGAAGAGAAAGAAGCTAAGTCTGACTAAACATCCATCAAATCTGTCT-GTGGTCCCTGCTTCCCTTCTTATACAATCCAGAGGAATATTTTTATCAACTATATTGTAAATGTGAGTTTTTTAGGAGCTCTAGGAACATTT
s HiC_scaffold_1  64199921 425 + 233722169 GCATC-CTCAAGCCTGCTCTGCCAAAAAACGTCCCAGAGGAAACTCAGC-TCAAGGGCGTGGTGAACGAGGGGCTGAGAGA----TCAGCAAGGTTGTGCGCTAAAGCTGCTCCTAAAAAAGTGGAAATGAAGCCAAAAGCAGCAGCCA---GAAAGGATAACTCTTCAGACaaaaaaaag-----gacagagaaaagtggagaaaaaggaaa---actgatgTGGCTAAGCAAGAAATCAAGGATTTACCTGCAGAAAATGGAGGAACTACAAGTGAGGAGAGCTCAGCCTCTGACGAAGCAGAAGATAAAGAAGCCCAGTCTCACTAACCATGTACCATGTTTAATTAGTGGGCCCCGGCTCCCTAATTTCACAATCCAGAAGAGTGTTTTTATCAACTGCTTTGTAAATGTAAGCTTCTAAGTAGCtctagaaacattt

a score=32949
s chr3           102880888 844 + 160039680 AAAAAGGCCATGGGAAAGGATAAAGATTCAGGCAAAAAAG-TGCAGATAAAAGGGAAGAGGGGAGCAAAGGC-AAACAGGCTAAAGTGGCTGACCAGCAAACTACA---GATCTGCCTGCAGAAAATGGAGACAG-----AACACCAGAGTCCAGCCTC---TGAAGAAGAGAAAGAAGCTAAGTCTGACTAAACATCCATCAAATC-TGTCTGTGGTCCCTGCT-TCCCTTCTTATACAATCCAGAGGAATATTTTTATCAACTATATTGTAAATGTGAGTTTTTTAGGAGCTCTAGGAACATTTGTAAACAGTAG---ATCCCACCTCATCCCATTGTTTAACTGTAATGGTTTTTTTTAAAGAGGTTAAATCATTTGCTGGTTGTTTATTTTTTGATACAACCAGAAAATAGCAGGATACTAAATCAGGAGAGGCTGTAACTGTCTCCGGGGTCACCATAACATTCTGTAGA-GGGGGCTAGTTTTATATCCTACAATACAAAGCGTACTAAATGGCAATTTGGCATCTCAGTCGTGCATT---TGTGTCTGGAATATTTT-CAGTTATATCTGGTCCCGTGTTTCTAGTAGAACCATTTTGTAAGAAAGGCAGTCCTTGATCCTTGCCCTGTCAGAACTG-----------TGATGTC-----TGTGGTCATGGCAGTCCA-TATTCCTAACAGTTGTGGTAATGTGCTGTGAAAGATGGAAATTTTGAGTCTGTTCTGTGTGTGACATACAATTGTAAGTTGGTGG-ATTGAGGA-------TTATGAGCATTTG------GTTGTTATAAGAGCTCTTAGGGAAACTT----GCCAAGTTTGAAGCTAGAACATCATTGGAATAAGTTCAAAGAAAAACAATACATAGCTCATCAC
s HiC_scaffold_1  17395083 894 + 233722169 aaaaaagtagcgGGAAAGGATACATCTTTGGACAAAAAAGGTgcaagcaaaaaggaaaaggagagcaAAGGCGAAACAGGCTGAAGTGGctaaacaagaaaccaaataagaTTTACCTGcagaaaatggagaaagggaaaatgaagagAGTGCAGCCTCAAACGAAGCAGGAAAAAAGACCAAGTCAGATTAACCACACACCATGTCCTATCAGGACTCCCCGGTCTCGCTGCTTGTACAATCCAGAGGAATATTGTTATCAACTATTTTGTAAATGCAAGTTTTTTAGCAGCTCTAGTAACCTCTTTAGAAAGGCGGGAATCCTATCTCATTGCATTTTCTAAgggtaa--attatttatttagaggTAAAATCATTCgctgattgttcattttttggcACAACCAGAAAATAGTGGGATACTGAATTAAGGCAGGTTTTGACTGTCTTGGGTGTCAGTTTAACATTTCATAGGTGGGGATTAGTTTTATATCC-ACAATACAAAGCATGCTAGATGGCAATTTAGAATCACAATCATGCATTTAATATGccttgaacattttaaaatgatttctactcctatatttttagtaaaattgCTTACTAAGAAAACTACTTCCTGGCTGTTGCCCTGTCAGAATTGTATGCACTTCCTAACATCTTTAGTTTGGTCATAGTAGTCCAGTTTGCCTAA----TTTGTTAACGTGCTGCAAAAGATCGAAAATTTGAGTATGTAGTTTATAAGATACAAAATTGTGAATCAGTGGCATTTAAAATAAGATCTTAGCAACATTTGAAGATAGTGGTACTTAAACTTCTTACAGAAAATTTGCCTCCAAATTTGAAGCTGGACAGTCTCTggaataa-ctgaaaaagaaacaacacGTGGCCTTTTAC

a score=25069
s chr3           102881075 651 + 160039680 TCAAATCTG-TCTGTGGTCCCTGCTTCCCTTCTTATACAATCCAGAGGAATATTTTTATCAACTATATTGTAAATGTGAGTTTTTTAGGAGCTCTAGGAACATTTGTAAACAGTAGA---TCCCACCTCATCCCATTGTTTAACTGTAATGGTTTTTTTTAAAGAGGTTAAATCATTTGCTGGTTGTTTATTTTTTGATACAACCAGAAAATAGCAGGATACTAAATCAGGAGAGGCTGTAACTGTCTCCGGGGTCACCATAACATTCTGTAGA-GGGGGCTAGTTTTATATCCTACAATACAAAGCGTACTAAATGGCAATTTGGCATCTCAGTCGTGCATT---TGTGTCTGGAATATTTTCAGTTATATCTGGTCCCGTG---TTTCTAGTAGAACCATTTTGTAAGAAAGGCAGTCCTTGATCCTTGCCCTGTCAGAACTGTG-----------ATGTCTGTGGTCATGGCAGTCCA-TATTCCTAACAGTTGTGGTAATGTGCTGTGAAAGATGGAAATTTTGAGTCTGTTCTGTGTGTGACATACAATTGTAAGTTGGTGGA--TTGAGGA-----TTATGAGCATTT---GGTTGTTATAAGAGCTCTTAG----GGAAACTTG---CCAAGTTTGAAGCTAGAACATCATTGGAATAAGTTCAAAGAAAAACAATACATAGCT
s HiC_scaffold_1 210615648 684 + 233722169 ttaggtctGCTCAGAGGCCCCTGGCTCCCTTCCTGTACAGCCTGGAGGAATATTTTTATCGACTATTTTGTAAATGCAATTTTTTTAGTGGCTCtagcaacatttttaaaaagaagggacTCCCACCTCATcagattttcaaagtataaatgattttttt--agagGTAAAATCATTTgctggttgtttattttttggcacAATCAGAAAGTAGTGGGATCCTGAGTTACGGCAGGCTTGGACTGTCTTGGGTGTCAGCGCAGCACCTCACAGGTGGGGGTTAGTTTTATATCCCATGATAC-AAGCACACTAAATGGCAATCTGGAATCACAGTCATGCATTTAATGTGTCTTgggtattttaaataacttttgttcccatgttctttttaatagaattgcttctttaaaaaactatCTTCTGATTGTTGCCCTCTCAGAATCGTGTGCACTTTGTAACATCTTTGGTCGTGGTAGTGCAGTTTGTCTAA---TTTTGTTAATGTGCTGTGAAAGACTGGAAATTTGAGCATGCAGTGTAGATGACATGAAATTGTGAATCAGTGAGACATAAGTAACACTTTATCAACATTTGAAGATACTCGTACTTCATCTTGGTACTGAAAATCTGCCTCCAAGTTTAAAGCTGGAAAATCACTGGACTAa-cggaaaaagaaacaatatgtgGCT

a score=11771
s chr3           102881171 446 + 160039680 GAACATTTGT---AAACAGTAGATCCCA--CCTCATCCCATTGTTTAACTGT-------AATGGTTTTTTTTAAAGAGGTTAAATCATTTGCTGGTTGTTTATTTTTTGATACAACCAGAA-AATAG-------CAGGATACTAAATCAGGAGAGGCTGTAACTGTCTCCGGGGTCACCATAACATTCTGTAGA-GGGGGCTAGTTTTATATCCTACAATACAAAGCGTACTAAATGGCAATTTGGCATCTCAGTCGTGCATTTG---TGTCTGGAATATTTTCAGTTATATCTGGTCCCG-------------------TGTTTCTAGTAGAA-----------CCATTTTG---TAAGAAAGGCAGTCCTTGATCCTT-----------GCCCTGTCAGAACT-----------GTGATGTCTGTGGTCATGGCAGTCCA-TATTCCTAACAGTTGTGGTAATGTGCTGTGAAAGATGGAAATTTTGAGTCTGTTCTGTGTGT--GACATACAATTGTAAGTTGGT
s HiC_scaffold_1  64201045 528 + 233722169 gaaCATTTTCTAAAAAGAGGGAATCCCATACCTCagtgcatgtttttatttttagtgtaaatgtttatttttttagaggCAAAATCTTTCACTGGTTGCTTACTTTTAGGAACAACCAGAACAGTAGGTACAGTCAGAAAATTGAATTGTGGGAAGTTTTGACTCTCTTCGGTATCAACTTAACATTCTATAGGCGGGGGTTAGTTTGATGTCTTACAGTATAAAGCACAGCAAATGACAATTTGGAGTCATGGTCATGTATTtaatttatcttaaatatttgaaattatttctatgcccattagaattgtttttttttttgtttttgagacaaggtcttgctacgtaTTCTAGGTTGAAAACGATATATTTTAGGCCCTATGTATTCAAGGCCCTGTAAGAATTCTAtgtatttgataatatttttggTCATGGTAATccattttttctaataattttgttAAGATGCTGTGAAAGTTCAAAAATTTGAACATATGAAGTATTTACGATATGAAACTGTAAACTGGT

a score=8719
s chr3           102927344 590 + 160039680 AGTGAGT-CTATGAGTGAGGGGAAGGCCTAGAACAATACTTCATACC------ACTG-GTAATCTGTTCATTT---GGACTACACTAAGTTTGGGGTTTTTTTCCTTTAATAATAAATTAACCTAAGCTTGTTGCAGCTATTGTACATTATAAA--CTTTAATTTCTACAAGAGTCAAAACAAAATATTGTACAGCTATACAGAAATAGTTTCTTTCTTTGTATCATTATATAAGCACTTTTTTCCTTGTCCtttgaaacagaatccaactacatagcccatgctgccctcaaacttgcatctttcagccttag-----tcttctgaatgctaggattgaaaagcattgtatcactatgcctagTATTTTATATTCTTTTTCTTTTACTATTTCAATTTCCTGCT-----TAAAAATGAAGACATA----CACAATTTATCTGAAGCACGCACGGTATCAAGATAATAAACATCACTGTATTCTACTTCCACATCTTGCTCCATTGGAAAGTTTTCAGGTGCAGGAACATACAGCTATCATAACCTATGGTAACAATGCCTTCTTCTAGAATACCT-CTGAAGGACTTGCTTCAGGCTCTTTTAAAGCTAACTTTATT
s HiC_scaffold_1 179982190 532 + 233722169 AGTGAGTGCCACGGG-GACGTGAAGGCCTGGGGTAGTATCACACATTCTGGGGGCTGTGTAAGCACTGCAGTTTATAGGCTACACTGCATTTACAAAAATTTTCTTCCAATAATAAATTAACTTTAGcttactataatatttttacttcataaatactttaatttt--------------caaaagCTTGT------------------TATCTTTTGTAgtaacattaaat---------------------ttaaaatacaaacacattgTACAGCTC-------TCCAAaacttatttccttt--ctttatatacttattctatatgct-----------------tctttctatttttcaaattttaattcttttctactttaaaatttattgttactgttgttgttgAAAACTGagatataaacacacacattagCCCAGGTCTACACAGTGTCAGGATCATGAGTGTCACTATCTTTCACCTCTAAATCTTGCCCCACTGGGAAGTCTTTAGGTGTATGG------GGCTGTTTCATCCTGTGAGGTTAATGGCTTCTTCTGAAATATCTCCCTAAAGACCTGCCTGAGGTTTTTCTTGAGGAGAtattatt

a score=7873
s chr3           102927789 373 + 160039680 TCACTGTATTCTACTTCCACATCTTGCTCCATTGGAAAGTTTTCAGGTGCAGGAACA---TACAGCTATCATAACCTATGGTAACAATGCCTTCTTCTAGAATACCT-CTGAAGGACTTGCT---TCAGGCTCTTTTAAAGCTAAC--TTTATTTAATA--TGAAGGCACATTTTTAAATAGAAACCTAATAGTCTAG-----AAATTTTAAAAAGCAGTAATGCTTGCTTATTATTCAAATATTATATA-------ACTAATATATGTGATATACTTTTATACAACTAGCA----ATCAGACTTGTTTATAGCAACATTACTACAAAT-------TACTGTCTACAGTGTTACAA----ACAATTCATTGCTAGATGAAAA-TTTTCAACT-CTTTATATTTTTATGGTACC
s HiC_scaffold_1 161424885 406 + 233722169 TCATTGCCTTCCACCTCCACATCTTATCCCACTGAAAGTTCTTCAGGGGTAAGACCACCTTGGTGTTGCCTTCGCCTA---TAATAATGCCTCCTTCTAGACTCTCTCCTGAAGGCACTGCCTAATAATACTGTTTTACAGTTAACTATTTGTTTTATAAGTGGGAACGCACTCTAAAATAATGACTAAAAAGTATAGCTTATGAAATGCATAAACCACTAA--CATAGCTATTTATCAAGTATTGTGTATTATTACATAATTGTATGTGCTATAGTTCTATACAGCTGGTGCCACAGTAGGTTAACTTATGCCACCGTAACCACAAACATATGAGTAATGCATTC--TGGTACAAGAGGAATATTCTTTGGCCAATGGAAATTTTTCAGCTCCTTTATAATCTTATGGGACC

a score=5318
s chr3           103007240 244 + 160039680 ATAAGTAAGAGTATACT---AATGTTCAA--AAGGCATAGATTACTACGTA---AAATTGTAACAACCGCTTATTTTCATTATCAGTTA---TGCATTTTACATAATTGTATGTGCTATGTTCTTACAGGACCAGCACCGTGGGTTTGTCTACACCAGCGTCACCATAAAGACATGACTAATGCACCTCCCTACAAATTCACTACCCTGTGACATCACTAGGCAATAGAAATTGTTCAGTTCCATTAAAACAGAA
s HiC_scaffold_1 220714299 237 + 233722169 ataagtaagtatgCACTTAAAATATCAAATCACAGAATAGCATAGTAAATATATAAACTGTGATAGTCATTTGTTAACACTGTCAAGTAGTCTGTCATGCCCATAAT-GTATGTGCTGTACTTTGACATGCCTGGCAGCAAAGGTTTGTTTACATCAGTGTCACCACAAACACACACGTGATG----------------TACTGTGCTGTGATGTC-CTAGGTGACAGCAAATTTTGAGGTCCATCATAATATAA

a score=4450
s chr3           103090028 151 + 160039680 TGTTCACTTTC---------CACAGTAAGAC-TTATGCTCACCGCCGCCTGAAGTTCCTCTCCTCCAAGTTCCAGGTCCATCAGATGCTCAACGAGATGGATGAGCTGAAGGAGCTGAAGAACAACCCCCACCGGGACTTTTATAACTGCAGGAAGGTAAG
s HiC_scaffold_1 115055581 160 + 233722169 tgttcacttccttccttctgcccAGAAAGTCATTCTGCT-ACCGCCGGCTACAGTATTTGAGCTCAAAGTTCCAGATGCATGTTCTGCTCAATGAGATGAAAGAGCTGGCTGCCCAGAAAAAAGTGCCACACCGAGACTTCTACAACATTCGTAAGGTAGG

a score=5794
s chr3           103091138 677 + 160039680 CCTAGGTGGATACTCACATCCATGCAGCTGCCTGCATGAACCAGAAGCACCTGCTGCGCTTCATTAAGAAATCTTACCATATTGACGCCGACAGGGTGGTCTACAGCACTAAAGAGAAGAGCCT------GACTCTGAAGGAACTTTTCGCTAAGTTGAATATGCATCCCTATGACCTGACTGTTGACTCTCTGGATGTTCATGCTGTAGGTTGGGAAGATGTTCGTTTTACTCGCTCTAATGGCAGAGAACCCCAAATGTCCCAAGCCGTCCCTCCCTTAGCACATCCCTCGTAACCCCTTGGCTACTGTGATGACTGAAAGCACACCTGATGAGTTTTGAGGTATCACTCACCCTGGACTTCATTCTTAGAGCCCAGCCTCTTTCCCTGAGATTGGTCTCCTGTTCTGCTTGGTTGTCCCTGGGGACTCTGCTTCCAGGAAGCTCTGATAATCAAAATTTCTGCTCTTGTTTCTTCGTTCAGGGACGCCAGACGTTCCAACGTTTTGATAAGTTCAATGACAAATACAATCCCGTGGGTGCAAGTGAGCTTCGGGACCTCTACCTAAAAACAGACAACTACATTAATGGGGAGTATTTTGCCACTATCATCAAGGTGAGACAAAAAAAA--------TACTTGGTAAGGTTCATGAATAGgggaggagagaaagacaggaaagaaggaa
s HiC_scaffold_1 115055911 480 + 233722169 CTCAGGTGGACACACATATCCATGCCTCATCTTGCATGAACCAGAAGCATCTGCTGCGCTTCATCAAGCGAGC--AATGAAACGGCACCTAGAGGAGATCGTGCA----TGTGGAGCAGGGCCGAGAGCAGACCCTGCGGGAGGTCTTCGAGAGCATGAATCTCACTGCCTATGACTTGAGTGTGGACACACTTGACGTGCATGCGGT-----------------------------------------------------------CTGTCCCCATGTCA-------------------TGGGCTAGTG--------------------GGTGGGT--------------------------CATT-TCAGCGTTCAG----------------GGGTGACCTGGGCTGC-----------------CCATCTTCCCAGGA---------------------------------------CAGGAACACC-----TTCCACCGCTTTGACAAGTTCAATGCCAAATACAACCCTATTGGGGAGTCTGTCCTCCGAGAGATCTTCATCAAGACTGACAACAGGGTTTCTGGGAAGTACTTTGCTCATATCATCAAGGT---ATGGAGGAAACCCTTCCCTGCTGAGCAGGGAGCCTGAAAGGGGGACTGCTCAGGTGCAGGGAGGGAGAAA

a score=5026
s chr3           103092279 202 + 160039680 ACCCCTCTCTTGGTTTTGCAGGAGGTGGGTGCAGACCTGGTGGAGGCCAAGTATCAGCATGCAGAGCCTCGCTTATCCATCTACGGTCGCAGTCCAGATGAGTGGAACAAACTCTCCTCTTGGTTTGTCTGCAATCGCATCTATTGCCCCAACATGACGTGGATGATCCAGGTCCCCAGGATCTAGTATGTATTTGTCCCTT
s HiC_scaffold_1 115056458 196 + 233722169 ACTCCACACATGCTTTT--AGGAGGTGATGTCGGACCTAGAGGAAAGCAAATACCAGAATGCAGAGCTGCGGCTCTCTATCTACGGGCGCTCGAGGGATGAATGGGACAAACTGGCACGCTGGGCTGTGATGCACCGAGTGCACTCTCCCAACGTGCGCTGGCTCGTGCAGGTGCCCCGCCTCT----TGTGAGTGCCCCTT

a score=8053
s chr3           103094387 492 + 160039680 TTTTGCCTTTAGTGATGTGTTCCGATCCAAGAATTTCCTGCCACACTTCGGAAAGATGCTGGAGAATATTTTCCTTCCAGTGTTTGAGGCCACCATCAACCCCCAAGCTCACCCAGACCTCAGTGTCTTCCTCAAGCACGTAAGCATGAGCCTCCGGGCTCCTAACTTCTCCTCACAAGCCAT--TTAGCCTTGCTGGCCATCACTGACTCTCCTGCTTAGTTATCTCTTTACATCCGCCTCCCCTTTGGAGCTGTCTGAGGAGTTTCACTGAGTGCAGAGCCCCTGCCCTCAGACTGAACCCACAGTGTGGCTCACTTTTCTGACAGATCACTGGCTTTGACAGTGTGGATGATGAATCCAAACACAGTGGTCACATGTTTTCCTCCAAGAGTCCCAAACCCGAGGAGTGGACAATGGAAAACAACCCGTCTTATACTTACTATGCCTACTACATGTATGCAAACATCACGGTGCTCAACAGCCTGAGAAAGT
s HiC_scaffold_1 115056907 394 + 233722169 TCTTGCCTGTAGTGATGTGTATCGCACCAAGGGCCAGCTGGCCAACTTCCAAGAGATGCTGGAGAATATCTTCCTACCACTGTTTGAGGCTACTGTGCACCCCGCCAGCCACCCAGAGCTACACCTTTTCCTGGAGCATGTGAGCAGCAGCAT--GGGCT-----------------GGGTGTGGGTAGGATTGCCAG-----------GCTCGTGCTCAGCCATAGCTGTA-----------------GGGCTGACCATGG------------------GCTCCTG-----------------------------------TGCTAGGTGGATGGTTTTGACAGCGTGGATGATGAGTCGAAGCCAGAAAATCATGTCTTCAACCTGGAGAGCCCCCTCCCGGAGGCTTGGGTGGAGGAGGACAACCCACCATACGCCTACTACCTGTACTATACCTTTGCCAACATGGCCACATTGAACCACCTGCGCAGGT

a score=4988
s chr3           103095619 193 + 160039680 GACCCCACTTTCCT--------TTTCACAGGGAACGAGGCATGAATACATTTCTGTTTCGTCCCCACTGTGGGGAGGCTGGGGCTCTCACTCACCTCATGACAGCCTTCATGATAGCAGACAATATTTCTCATGGACTGAATTTAAAGAAGGTGAGTTTAGCTCGCTCTTTGCTCATtcctctcttctcttctcttctctt
s HiC_scaffold_1 115057567 198 + 233722169 GACCCTATCTTCATGCCCCCTCCCCCCCAGGCAGAGGGGCTTCCACACGTTTGTGCTGAGGCCACACTGCGGGGAGGCTGGGCCCATCCACCACCTGGTGTCAGCCTTCATGCTGGCCGAAAACATCTCCCACGGGCTGCTTCTGCGTAAGGTCAG---GGTCTGCACGCTAGCCTTCTCCCTCAgttgttcattttcctt

a score=9477
s chr3           103098657 482 + 160039680 CTGTCTTTTCAGAGTCCTGTGCTACAGTACTTGTTTTTCCTAGCCCAGATTCCCATCGCCATGTCACCGCTGAGTAACAACAGTCTGTTCCTCGAATATGCAAAGAATCCTTTCTTAGATTTCCTCCAGAAAGGCCTGATGATCTCACTGTCGACCGATGACCCGATGCAGTTCCACTTCACCAAGGTGCGCcgcacgtacgcacgcacgcgcgcacgcgcgcacgGAAGCTTGAGC--------ATGGT-----------TTGCTGAGCT-------------------CTCCCTCACCACGCAGAAATGGAAAG---TCAAATCAGGGCGCTTCTTTCTCCGCTTTCTGTAGGATGTGTACTGTTTCTTTTACTAATGCACTTCCTCCCTTACGTAAATAACTACAGGAGCCCCTGATGGAAGAATACGCCATCGCTGCGCAAGTCTTCAAGCTGAGCACGTGTGACATGTGTGAGGTGGCAAGGAACAGTGTCCTGCAGTGTGGGATTTCTCATGAGGTA
s HiC_scaffold_1 115058029 479 + 233722169 CTGCCTACCTAGGCCCCAGTCCTGCAGTACCTGTATTACCTGGCGCAGATTGGCATCGCCATGTCACCGCTCAGCAACAATAGCCTCTTCCTCAGCTACCACCGAAATCCGCTACCTGAGTACTTGTCCCGTGGTCTCATGGTCTCACTGTCCACTGATGATCCTCTGCAGTTTCACTTCACCAAGGTCAGAGGCTGACAGACA-GCCAGTGTGCCTTGTCCTGTGACATTGTGATCTCTCTGGGCTGGTGCTGCCCCCAGTTGGTGGACTGTAGTGACTAAGTGGCAAACCTcccagggaggcagagagggagggccTTCAGGGCCAGGCACACCTGTCTGAG--------AGAACCTG-GCTG--------------GCAC--------------------CTACAGGAGCCACTGATGGAGGAGTACAGCATTGCCACCCAAGTGTGGAAACTCAGCTCCTGTGACATGTGTGAACTGGCCCGCAACAGTGTGCTCATGAGCGGCTTTTCCCACAAGGTA

a score=7966
s chr3           103220092 199 + 160039680 TGAtaaataaaaattactggagcccatggttttgaattaagcttctgcagtaggatccagcacaccaggctaaa------------GCCACTCATACCCAAATTTCATGTCACTAGGCTCAAACTAAGCCATTTGTCTGTCCTTGAAAGAAACAAGAATGAAAGCAACAACAGACAAATTTCTCAAGCAGGGCAGTTTCAGTTGGAATAAT
s HiC_scaffold_1  59514267 211 + 233722169 tgttaaataaaaattacaggaaGCTATTGCTTCGGACTAAAATTCTGCACTGGACCCCAGCAAGCCaggttaaaaatcaaaatggagtcaTTCCTGCTAAAATTCTACATCGTAAAGCTGAAATTAAGCTGTTTATCTGGACTTCTGGGACACTAGGATTAGAGAGATAATAGGCACATTTCCCAAACAGGACAGTTTCGGTCTGCATGAT

a score=7897
s chr3           103220101 218 + 160039680 aaaattactggagccca-tggttttgaattaagcttctgcagtaggatccagcacaccaggctaaa------------GCCACTCATACCCAAATTTCATGTCACTAGGCTCAAACTAAGCCATTTGTCTGTCCTTGAAAGAAACAAGAATGAAAGCAACAACAGACAAATTTCTCAAGCAGGGCAGTTTCAGTTGGAATAATCA----CCCTGGCCTTAGTCTTAACACACACA
s HiC_scaffold_1  83819966 235 + 233722169 AAAATTACAGTAGACCACTGTTTTTGAACTAAACTCCTGCCCTGGGCACCAACAGGCAGggctaaaaatcaaaatagagtcaCTCACACTGAAGTTCCACATCACCAGCCTGAAACTAAGCTGTTTATCTGACTTTCCAAGAAATCAGGATTAGAGAGATAGCAGCCAAATTCGCCAAACAGGCCCATTTCAATTGACACGATAAAGTCCTTCTGCAGTAAccctaatacacaca

a score=4468
s chr3           103254627 357 + 160039680 TTAAAAAAACAACAAAACAAAACAAAAACAAGGACAGTACAACATTGGTATTTAGATTTCTGAAAAAGAATGAGTACCACAGGCTAATGG----------------------CTTCAGAAGCATGCTCCTGCCTTATAACGCCAACCTGTGGTATTCAAATGATGCCCTAAAAGACTTCTATTGAAAAActgaaatagtatacaacacaggat----gccctggaactcatggcaacccttctgcctcagcctcaggattactgaggtcacTGTGCCCAGAGAAAAATATAATTTGAATGGCCCCCTTTTggggctggagagttggctcagcggttaagagcactgactgctcttctg-aaggtcctgagttcaaatcccagca
s HiC_scaffold_1 206844440 331 + 233722169 tcaggaagaccaaaaaaaaaaaaaaaattaaggtggGGG------TGGTATCAGTGTTTCTGAAAGGGAAC-AGTTCAGCAGCCAGATGGGTAAGATCCCAGAGTTGTCCAGCCACAGAAACAAACTTTGGGATTATAACACCAATCTGTGATATTTCAATGAGACAGTAAAAGATCTATATTGAAAA----AAAGGGTATGTATTTTAGGGTTTTATCCCTGATATTCA----------------CCAGATGTGGAACTGGTGCCTCTATTAAGC--------------AATGTgaa------------ggggctgagggtttagctcagcaggcacaggtgccggcctggcaagtgtaaagtcatgagttcagtctccagta

a score=5383
s chr3           103334690 271 + 160039680 cttgcctctgccccctaag---------ttctgggaataaaggcactatcataccaggttATAAAGT---TGTCGTACAAGGA--------CTAAAAAATAGCAACAAAA-----------AATATAGTAAATACATATACACATGTCAATATCAGTTATTATTTTCATGATCAGATTTTATGTTCTGTGTACAATTGT------TGAACTTTCACATAATTTGTTCTATGGCAGGTTTATGTA-ATCGGCAACATCGCAGGCATGAATGATG----GCTTTGTGTTG-------TGAGTAGCATCATTAAGCAATAGAA
s HiC_scaffold_1  59586393 310 + 233722169 cctgcctcagtcttccaagaaCCTAGGATTCTAGGCAT----GCACTGGAATACCCagctaaaaaataatttttatttaagtaggAATCCACTCTAAGATAGTGATAAAGGCTTAGTATTTAGTGTACTAAATACATAAAC------CAGTAACAGTCATTATTCTCATGATCAGATGTTATGTACTGTACATAATTGTGTGTGCTGTTTTTATATATGATTGGCAATACAGTGTGTTTGTTTACACTGGCATTACTACAAATGTGAGGAATGCATTGTCCTGTAATGGTGCTGATGGTTAATGTCACTAGGCAATAGGA

a score=4186
s chr3           103341202 191 + 160039680 TGGAAAAT-CCATAGTTGATCTCATGTAGTA----TGTTGCGATCAAATTGCTGGGTGGATTTAAAATATTATTTGAAATTACCGGCTATATATATATAC--------AAAC-TAAATGGATTTCATGTTTATACTTGAGTCTTATCCCCAAGACATCTCACCCTGTATA-GTAAATCTATCAAAGTAGGAAAAAACATCTTAAAA
s HiC_scaffold_1 151548652 189 + 233722169 TGGACAATGCTGTAGCTGACCTTATGTGATAACCACATGGCAATAAA--TGCTGTA-GGATTTAC--------------CTGCAGCCTATGTATATATGGTGTACAGGAAACATAAGTGGATTCTGTGTTTATATTTAGGTCTCATCTCCAAGACATCTCATTATGTATGTGACAATAttccaaaaatctgaaaaaaatttcagaa

a score=4827
s chr3           103392933 104 + 160039680 CTGTCCCTAGAAGCATTGCAAGTGTGGCTGCTATGTCACATATTGACCACTAGGTGGCAGAGGAG----AGACGATGACTATGCTC--------------------------TGATTAGTAGCCTAACATTCCC
s HiC_scaffold_1 194511548 134 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=15895
s chr3           103796441 349 + 160039680 CACACAACTAGTATCACCACAAATTTTAGCCTATGGTACCATCAAAGCTGCTTTTCAATTCCATGTGTCCTTGATCCCTCTGCTGTGTACCTCAGTGGTTATTCCAAACCTTTATGACTCAAACTGTTGCAACATACGAAGCCTTAGGAAG----------AAATCAAGAGTACCAAGCCTTGACACTCTGAAGCAATATCCTTGAAATATAGAAAGAAGTCTGGTTTCCCACCCTCATCCCAAGGATGGCAGAATTAAATACTTCTCTATTTTACAGCTCAACTTATAG-CCAGTCA--TTCAGAAACTCGAGTCTTTAAGGTCTTATCCTCACCTATCCCTTCCTTCACCAGGCTCTCAG
s HiC_scaffold_1 119528731 356 + 233722169 cacaCAACTGGTATCACCACAAATTTTAGCCTCTGCTATCTTCAAAGCTGCTCTTCATTTCCTTATATGCTTGATCC-TCCCCCATGTATCTCAGTGGTTATTCCAAACATTTATGACTAAACCTTTTAAAACATATGAAGCCTTGGGAAGGCATCTTTCAGCATCAAGAGTACCAAGTTGTGGTATCCTAAGGCAAATTCCTTGGATCACAGGAC-AGGTCTGGTTGCCCAATCTCATCCCCAGGATGGCAGAATT-ACTCCCTTTATATATTGAAGTCTTGCTTAAAGCCCAGGCACTCTCAGGAATCCCAATTTTTAAGGTCTATTTCCCACCTCTAC---CATTCAGTAGGCTCTTAG

a score=17762
s chr3           103804605 499 + 160039680 TTAAGCCATGAAGTCATAGAC------------CAGCTCAGGCTCCTCTCCATCAGTTCCCACAAAGTGTGGCTCTCTGGACAGCACAGGCAGGCAGTTTA-CTGACCTCAGCTCCCTTCCTCTTCAGCTT--TTCTTTTGCTGATCCCTTTCCTT---------CACGTGTTCTGTGTGTTCTCACGACACACAGAGCTTCACATGCTCAATGTGTA--TCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTGCT-GCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAGACTCTTCA-----GTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGTATGCAGTCACTTGAT-TCAATAATATCTCCCTGCCTGAACATTCACACAGACGTG-CTGAAGGAAAAACTCCATGCTTTCCAAAAGGCTTAGAGATTATACGTCAGGTATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAAATTAATGGAA---GATGGTTTTGGCTGAAAGGAAG
s HiC_scaffold_1 178274457 530 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGA------GTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaagcaag

a score=17921
s chr3           103804605 495 + 160039680 TTAAGCCATGAAGTCATAG------------ACCAGCTCAGGCT-CCTCTCCATCAGTTCCCACAAAGTGTGGCTCTCTGGACAGCACAGGCAGGCAGTTTA-CTGACCTCAGCTCCCTTCCTCTTCAGCTT--TTCTTTTGCTGATCCCTTTCCTTCACGTGTT-CTGTGTGTTCTCACGACACACAGA--GCTTCACATGCTCAAT--GTGTATCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTGCT-GCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAGACTCTTC--AGTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGTATGCAGTCACTTGAT-TCAATAATATCTCCCTGCCTGAACATTCACACAGACGTGCTGAAGGAAAAACTCCATGCTTTCCAAAAGGCTTAGAGATTATACGTCAGGTATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAAATTAATGGAAGATG---GTTTTGGCTGAAAG
s HiC_scaffold_1  80725745 521 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATATAGTA--ACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCCAAGAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGCAGTTCTGGCTGAAAG

a score=17191
s chr3           103804626 474 + 160039680 CAGCTCAGGCTCCTCTCCATCAGTTCCCACAAAGTGTGGCTCTCTGGACAGCACAGGCAGGCAGTTTA-CTGACCTCAGCTCCCTTCCTCTTCAGCTTTTCT--TTTGCTGATCCCTTTCCTTCACGTGTT-CTGTGTGTTCTCACGACACACAGAGCTTCACATGCTCAATGTGTA--TCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTGCT-GCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAGACTCTTC-AGTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGTATGCAGTCACTTGAT-TCAATAATATCTCC-CTGCCTGAACATTCACACAGACGTG-CTGAAGGAAAAACTCCATGCTTTCCAAAAGGCTTAGAGATTATACGTCAGGTATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAAATTAATGGAAGATG---GTTTTGGCTGAAAG
s HiC_scaffold_1  16174794 480 + 233722169 CAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCTGAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGACTGAAAG

a score=9498
s chr3           103804779 327 + 160039680 CTTCACATGCTCAATGTGTA--TCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTG-CTGCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAG-ACTCTTCAGTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGTATGCAGTCACTTGAT-TCAATAATATCTCCCTGCCTGAACATTCACACAGACGTGCTGAAGGAAAAACTCCATGCTTTCCAAAAGGCTTAGAGATTATACGTCAGGTATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAAATTA-ATGGAAGATGGTTTTGGCTGAAAGGAAGCT
s HiC_scaffold_1  99840708 327 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTG------GCCAAACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTACAAAGATGACAGTTTTTGACAAAAGGAAGCT

a score=15939
s chr3           103866309 363 + 160039680 gctCTGTATTGGTTTTATTAAAAATTCCAAACAATATGC--AAGACCTACTATACTCTGCACCAACAGGTCTGACTGACCCAAAAGGAGATGATGGAAACCATGGCCTGGGAGGTACAGACAATTACTTGAAAGGGATGGTTAATACAGTGATTTCAGACAGT---------------AAGAAGGCTTGCCA----ATATATCTTTTTCATGATGTTCTTGCTAGAAAGGTGAAATTGC---AGGAGCCTGAGTCTGAAC-------ACTCTTGGAGCTTTGTGGTTATGGTAGCAGTTC-AGAAAGGCTCCTGGGGACAAGACAGGTGCTACAAGCCAAGCAAGCTTATGGATCTGAACCACCAGTCCAAGAATCTGGTCAAAATTCAGATTTT
s HiC_scaffold_1 117593208 394 + 233722169 GTTCTGTGTTGAGTTTACTAAAAATGCAAAATCAGATGCGGAAGACCTGTTACACTCGGCACCAACAAATCCGCCAAATCCAGAAGAAGATGATGGAAATCACGACCTGAGAGGTGCAGACAAATGACTTAAGGAAGTGGTCAATAAACTGATTCCAGACAGCCTTGGGAAAGACATAGAAAAGGCTCTCCATTCTATTTATCCTCTTCATGCTGTCTTTGACAGAAAAGTCAGAGTGCTGAAGAAGCCCAAGTTTGAACTGGGGAAACTCATGGAGCTTCATGGTGAAGGCGGTAGCTCTGGAAAAGCTACTGGGGATGAGACTAGAGCTA-AAGTTGAATGTGCTGATGGATACAAACTACCAGTCCAAGAATCTGTTTAAAATCCACATTtt

a score=24919
s chr3           103902386 650 + 160039680 TCTTGCCT-GAGTTTATTTGTAAAAACAACATAGAA---CACTGGTCATCTGCAGACAGTGTGTAGGCTGTTTGTCATAGTAGTCCATCTGTCTTCACACTGGCAGG---AGCTTTTTCTATGGGGCTTTCACAGGGGCCCGGGCACCTTA--GGAGCCTGGGCTGGAGCTGAAG------------------CCTGGGCCTTAGCTGGAGCTTTGGCCTCTGCCTTGGTTTGAACCTTGGGC-TTTGGTTGGCAGAGCTTCTGACCCTTGGCCATGTAGCTT------CGAATATGCTTCCCAAGCTTGGGGTGAATGGTGAAAGCCAGACAGCAGAGTTTGTAGCTGGGGCCCTTTTGTCATCTTGGGTTTGTTGGCCTGAGGCTTCACCAGGGCCTTGACGGCCTCTGCGCGCGCACTCACTGCCTTTGCATTGTTGGCCTGCATCTTCTTCAGGCCTGTCTTGTTGTGTTTTTTGGCAAGG-----GTTCCTCAGGAACTTGGGGTCAAC--------CCCCTTAAGAGATTGGTATCTTTGCGACCCGGGTTTCTTGATGCCATTTCTATGCCATTTGCGGGACTGGTTGTGTGTGGTGTTGTTCTTGGACTTGGCCATGTCTGCACAGTAATCCCCGGCTCCCACAGCGCCTGGGACCAGAAGA----GAAAGAGTAGACCCTGTCTCTTAAGAA
s HiC_scaffold_1    787979 692 + 233722169 tcctgccttggGTTTATTTGTACGATGAACACAGAAGGACGCCAGCCCTCTCCCCCTGCATGGCAGCCTAGGGGTCACGCCAGTccttctgtcctcacattggcagTTACAGGATTTACTGGGGAGCCTTCACAGGGGCCTGGGCAACTTTTTGGAGCCTGAGCTGGAACAGAAGTTGGAGCAGCAACCTGAGCCTGGGCCTTGGTTGGAG-TCTGGCCTTTAACT------AAATCCCAGGCATTTGGCTGGCAAAATCTGCGACCCTTGGCAATGCAGATGAAGACATGGATACATTTCCCAAGCTTGGGGTGCGTGATATAGGCAAATTGAATGAGCTTGTGGTTCACACCCATTGGG-ATCTTGGGCTTGACCTCcctgggctccaggagggtctCAATAGGCTCCGCACGTGCATCCATGGCCTTGGCATTGGGGGCCTGCATTTTCTTGAAGCCCTTCTTGTTGTGCTTCTTGGAAAAATGCATATTCCTCAGGAACTTGGGATTTACGAGATATGACTCTTCAGAGAGTCATATCTTTGCAATCAGGgtttcttgatgctatttctgTGCCATTTTCAGCACTGGCTGTGCGTGGTGTGGTTCTTGGACTTGGCCATGTCTGCACTGTAAAGCACGGCTGTCA-AGtgcctggaaccagaagaaaagaaaaaagcatttcatgtatttttaaaa

a score=20017
s chr3           104129363 966 + 160039680 CTTTCATCACTGC-CAGGGGGGTCCATTCATTAGCACTGTTG----------TAACTTAAA---ACTCTCACATAATATCTGGAGCCCTTAATGCCCTT--AATGAAAGAGGA---TGTCCTCAAATTTCTTATAGCAAAAACTCACTT-AATGTCACCAACCTTGACTTCTAGATAGAATACTGCATCTACAAAAGGAAAAATGAGTTTCTATGTTATAGAGCTGAAAAGGACCTGGGAAAAGCTGCTGCTAGTAGCTTGAGCCATTTTTGTCATTGGGAACCCTGT--TCATCTCAGCAGCATC----TCCTCCAGGAACACTGGCC-TCCAGCTATGCTTAAGCTTGCTGCTGCCACAGGAACCACTCCAAGTGTTTCACTGGCTACTTCGCTCCTGAGACCTTCACTAACCACATCCAAGCAGCTTTCAGGTAACCATATGTTCTGGTGGTGAGTGATCCCTTGAGCAAGCAGCAGCCCCTCACAGAGGCATTTAGTCTACCTGCCAACCATCACTCTGTATAACAAGGATTCTCCTCTATGCTATGTGGACAT----------TGAGTGAACTTTTATGCTCACTCAGTGTTGTTTCTGAGGTAGTGATTACTGGTCCAGGAA-TTCTGCATATGCATAGCACCATTCACAT-------------------------TGATC--CACCTCTACAGAGATCCTGAAGAGACTGA----GAAGAGCAGCCCACTGCTGACGAGACTGTGATGAGGTAGGAATTTCAGAGCAAATGAAGGACACTAGCTCCTGAGTTCCCTGCTA------GTGAGGAAGTGGCTAAATTGTCTGAGGATGTATAGATGCCTTCTGTGCCTGTCCAGCAGTTCTCTAATGAAGGCTCGAGTGTCCAGCCATCACTGAAGACGGGTTTACACTCCTACACTCAGGTCACGGAATGTGTCGGCATCACCACTGAGTGATTGTAAGCCAATCTGCAGACACTACACAAAATGGAAAGGAGGAGGGTGGAAAG--AAACA----GTttctaaaaacaaa
s HiC_scaffold_1 190315708 988 + 233722169 CTTTCCTTGCTGCTCAGAGAGGTGCCCACACGA-CGTTGTTGATTCTGATCATCATTTAAAGAGACTTTCACA--ATGGCCGGAACCCTCAGTGTccttcaaatgaaggaggaagacGTCCTCAGAGTCCTTGCTGCAGAAATCCATTTCGGTGGCACCAGCCTGGATTTCCCCCTGGAACGCTGTATCTCTGGAAGGAGGATCGAT-----------------------GGGCCCTGGGGAAGCTTCTGCTGG-AACGTGAGCTACAGTCATGGTGGGAAGCCCTGTAGCGGCTGCAGCAGCATCCTCATCCTCGGGGAGCACCAGCCAGAGGGCTGAGCAGAAGTTTGCCGCTGCCCCTGGAGCTACTCCTGGTG-----CTGGCTGCTTCGCTCCTGGGAGCTTCACCAACAAGATCCAGGCGGCCCTCTGAGAGCCGTGTCTCCTGGAGGTTGCAGATCCCAGGA-CTGCCTGCAGCCCCTCATGGAGGCGTCT-TTCACTCTGGCAGCCGCTGCTCTGTGTAACGCTGGTTCTCCTCTGTGCTGTGTGGACCTCACTGTCCTGTGGGACAATGTCAGTGCTCACTCAGTG-GGTCCC----ACTATGGACGCCGACCTGGGAAGTGCTGCACCTGCGTGGTGCTGTCCCCCTCTGTGCGCCCTTGGAAGGTCATGGCTGATCTGTACTTCTGCAGAGAACTTGAGCAGactgaggaggaagagcaggctgCAGCTGAAAAGGCTATGACCATAGAGGAATTGCAGGATGAATGGCCTGCACCAGCTCCCGAGTTCCCTGCTGCCCAGCCTGAGGGCACAGCC---TGGTCCGAGGTGGC----AGGACCTCCGTGCCCATTT-GCAGTGCCCTGCGGAGGA--TGGGTACGCAATCAGC-CAGAAGGCTGTCTGCAACCCCACTGCACAGG-CGCCGAGTGGATGGGAGCCATGAC--AGTGGTTTTGAGCTGTTCTGCAGACACATCA------GCAAAGTAGGCCAACCAAAAGTAAAACACTGGgctcttagaaataaa

a score=15051
s chr3           104129404 925 + 160039680 TAACTTAAA-----ACTCTCACATAATATCTGGAGCCCTTAATGCCCTTAA----TGAAAGAGGATGTCCTCAAATTTCTTATAGCAAAAACTCACTTAA-TGTCACCAACCTTGACTTCTAGATAGAATA--------------------------------------------------------------------------------------------------------------------CTGCATCTACAAAAGGAAAA--ATGAGTTTCTATGTTATAGAGCTGAAAAGGACCTGGGAAAAGCTGCTGCTAGTAGCTTGAGCCATTTTTGTCATTGGGAACCCTGTTCATCTCAGCAGCATCTCCTCCAGGAACACTGGCCTCCAGCTATGCTTAAGCTTGCTGCTGCCACAGGAACCACTCCAAGTGTTTCACTGGCTACTTCGCTCCTGAGACCTTCACTAACCACATCCAAGCAGCTTTCAGGTAACCATATGTTCTGGTGGTGAGTGATCCCTTGAGCAAGCAGCAGCCCCTCACAGAGGCAT--TTAGTCTACCTGCCAACCATCACTCTGTATAACAAGGATTCTCCTCTATGCTATGTGGACATTGAGTGAACTTTTAT-----GCTCACTCAGTGTTGTTTCTGAGGTAGTGATTACTGGTCCAGGAATTCTGCATATGCATAGCACC------ATTCACATTGATCCACCTC---TACAGAGATCCTGAAGAGACTGA----GAAGAGCAGCCCACTGCTGACGAGACTGTGATGAGGTAGGAATTTCAGAGCAA------ATGAAGGACACTAGCTCCTGAGTTCCCTGCTAGTGAGGAAGTGGCTAAATTGTCTGAGGATGTATAGATGCCTTCTGTGCCTGTCCAGCAGTTCTCTAATGAAGGCTCGAGTGTCCAGCCATCACTGAAGACGGGTTTACACTCCTACACTCAGGTCACGGAATGTGTCGGCATCACCACTGAGTGATTGTAAGCCAATCTGCAGACACTACA-CAAAATGGAAAGGAGGAGGGTGGAAAGAAA-----CAGTttctaaaaacaaa
s HiC_scaffold_1  67839204 988 + 233722169 TAACTTAAAGGGAAACTTTATTATAATGTCAGGAACCCTTGATGTCCTGAAAATGCATAGGAAGATGGCCTCAAATTCCTTACAGCAGGAACCTATTTAGGTGGCAC-----TTGGTTTCCAGATGGAACAGTATaccttttttgaaaattatttatttatttagggccTATTATGCATTTTGTGCTGGCAgattctcctgcgtcagcctcctgagtgtgaggattacaggcatgcaccaccaccttTTGTATCTATAAAAGGAAAACGATG-GCATCTGTATCATAAATCTAAAGAGAACATGGGAGAAGCTTTGAATGACCACTCTCACCACTGTCGCCATTGACAGCCCCGATGATATCAGCGTCTTCTCCTTCAGGAACAGGGGCTGGGCACTGT-CCTAAGTCTGCTGCTGCC-CCTGAACCACTCC-----TATGACTGCC--CTTCACTTCTGTGACAGTCACTGAGCAGA-CCTGGCAGCGCT--GGGAGCTGTGTCTCCTGGTGGTCACTGATTCCAGGGCTGAGTGCCAGCTTCTCGCAGAGACTTCCTATGCCGACCTGCCTTCTGGGGCTCTGT-TCACAA--CTGCTCGTCTG-GCAATGTGGACACTGCCGTCCCCTTCATCAGGGGCTCA-------------CTGAGGTGGTGGATGCTG-------------------GCGTGGCACCCATGGAGCTCACGCCTGGCCTCTTCGTGCACAGGGTTCCCAAAGAGGCTGAAAAGGAAGAGCAGGCCACTGCCAAGAAGGCTGTGACCAGGGAGCAATCTCAAGGAAATGGGCTGTGGCAGTCACTGGCTACTCAACCT------------GAGGTGCCAAACTGGGCTACAGCCAGGCAG---------GTGCCCATGCAGCAGTTCACTGCTAAAGACTGCAGGGCCCGGCCGCCACTCAGGACTGGGCTGCTCAC---CACTCGAGCC-------------------CCACTGCACAGTCTTCAGCTGTTCTGCAGACACTTGAGCGAAACAGAAACGAGACTGatggaaaacaaaacaccatGTTCTAAACACTAA

a score=26129
s chr3           104129420 905 + 160039680 CATAATATCTGGAGCCCTTAATGCCCT-----TAATGAAAGAGGATGTCCTCAAATTTCTTATAGCAAAAACTCACTTAA-TGTCACCAACCTTGACTTCTAGATAGAATACTGCATCTACAAAAGGAAAAATGAGTTTCTATGTTATAGAGCTGAAAAGGACCTGGGAAAAGCTGCTGCTAGTAGCTTGAGCCATTTTTGTCATTGGGAACCCTGTTCATCTCAGCAGCATCTCCTCCAGGAACACTGGCC-TCCAGCTATGCTTAAGCTTGCTGCTGCCACAGGAACCACTCCAAGTGTTTCACTGGCTACTTCGCTCCTGAGACCTTCACTAACCACATCCAAGCAGCTTTCAGGTAACCATATGTTCTGGTGGTGAGTGATCCCTTGAGCAAGCAGCAGCCCCTCACAGAGGCATTTAGTCTACCTGCCAACCATCACTCTGTATAACAAGGATTCTCCTCTATGCTATGTGGACATTG------AGTGAACTTTTA----TGCTCACTCAGTGTTGTTTCTGAGGTAGTGATTACTGGTCCAGGAA-TTCTGCATATGCATAGCACCATT-----------CACATTGA--------------TCCACCTCTACAGAGATCCTGAAGAGACTGAG----AAGAGCAGCCCACTGCTGACGAGACTGTGATGAGGTAGGAATTTCAGAGCAAATGAA----GGACACTAGCTCCTGAGTTCCCTGCTAGTGAG---GAAGTGGCTAAATTGTCTGAGGATGTATAGATGCCTTCTGTGCCTGTCCAGCAGTTCTCTAATGAAGGCTCGAGTGTCCAGCCA-TCACTGAAGACGGGTTTACACTCCTA-CACTCAGGTCACGGAATGTGTCGGCATCACCACTGAGTGATTGTAAGCCAATCTGCAGACACTACA-CAAAATGGAAAGGAGGAGGGTGGAAA--GAAAC---AGTttctaaaaa
s HiC_scaffold_1 198593224 871 + 233722169 CACGATGTCCGGAGACCTTGATGTCCTGCAAATGAAGGAGGAGGACATCCTCAAATTCCATGCTGCAGGAACCCACTTAGGTGGCACCAAACTGGATTTCCAGATGGAGCAGTATATCTACAAAAGGAAAAGTGA-----TGGGAT-TAAATCTGAAGCGAACCTGGCAGAAGCTTCTGCTGGCAGCTCGAGCCATAGTGGCCACTGAAAATCCTGCCA---TCAGGGTCATATCCTTTAGGAACACGGGCCAGCGGGCTGTGCTGAAGTTTGCCTCTGCCACTGGAGCGGCTCCTATTG-----CTGGCCACTTCACCCCTGGGACTTTCACTAACCAGATCCAAGCAGCTTTCCGAGAGCCACG----------------------------------------------------------------------------ACTATGTAACACAGATTCTTCTCTGCGTTATGTGGACATTGCCATCCCGTGCAACAATAAGGGAGCTCACTCAG---TGGGTCTGAT---GTGGATGCTGGTCTGGGAAGTGCTGCACATGCCTGGCACCATCTCCTGGGAACACCCATGGGAGGTCATGCCTGATTTCTCTTCTACAGGGACCCTGAAAAGATTGAAAAGTAAGAACAGGCTGCTGCTGGGAAGGCAGTGACCAAGGAAGAATTTAAGGGCGAATGGACTGCACGCACCAGCTCATGAGTTGACTGCTGCTCAGCCTACGGTTGCAGACTGGTCTAAAGGCTTGCAGGTGCCTGCTGTGCCCAGCCAGCACTTCCCTACCGAAGACTGGAGTGCTCAGCCAGCCACAGAAGCTGGTCTTCAGCCCCCACCACACAGGCCATTGAGTGGGTAGGAATCATCACCAAGTGCTCTTGAGCTGCTCTGGAAACATTTCAGCAAAGTGGGAATTAGgttgatagaaaataaaacacgagtttctaaaaa

a score=6392
s chr3           104201101 107 + 160039680 ttttaaaCCCTGCCCCTAGAAGCACTTTAGGTGTGGCTGCTATGTCACATGTGTGTCAGCTGGTGGCAAAGAGGAGAGAGGCTATGTCTATGCTCAGTGTTCTgacc
s HiC_scaffold_1 194511539 107 + 233722169 TTGTGCACACTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACC

a score=4139
s chr3           104227356 142 + 160039680 TCTGATTTTCCCCTGCCTTTCTTTCTTGGAGCTGGCTGTAAAGAAACTCTCTGACTCTCCTTGTC---TAGGAGATCATAAAATCCCCAGTCTTGTCCACACCCAGCAAGAAGGAATGCTGCACA------AAAGAGGCCAAGGAGAATCT
s HiC_scaffold_1  57906486 135 + 233722169 TTTAATCTTCTCCTGCCATTTTATCTTGGAGCCGACTATGAACAAATTCTCTGACCTATCTTGTTTCATAGAGGAACATAGACCTCTCTTTC----------------AGAAGGGGTCCTGCAAACATTGCAGAGAGCACAAGAAGAGCCT

a score=7155
s chr3           104305448 392 + 160039680 gaagctttttagaatccataactgagcagaccactaacttccaccaatccagaagctaaaatgacatcagataggctttggggcctagagagaagcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCT--------------CTCAGATGTACCCACCTCTCAGA--TGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatc
s HiC_scaffold_1 145462136 404 + 233722169 GGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCC------AGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACC-CGGAGCTGTGCCTATCCTGGAGCTGTACCCACCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATC

a score=7801
s chr3           104305460 386 + 160039680 aatccataactgagcagaccactaacttccaccaatccagaagctaaaatgacatcagataggctttggggcctagagagaagcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCA-------------TCTCTCA---GATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATA-CCCACCTCTCAGATGTACCCATCTCTCGG-ATGTAcccatctctcagatgtacccatctcttgg
s HiC_scaffold_1 145462384 400 + 233722169 AATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGA---GCT---GTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCA-CCCAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACCCCAGGGCTCTACCCCATTCCAGATCTGCACCTATCCCAGAGCTGAATCCCCATCCTAG

a score=8902
s chr3           104305460 397 + 160039680 aatccataactgagcagaccactaacttccaccaatccagaagctaaaatgacatcagataggctttggggcctagagagaagcttcccccaatc--cactgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATC--------------TCTCGGA--TGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462199 408 + 233722169 AATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGT------GCCCACCTCAGAGCTATACCCACCCGGAGCTGTGCCTATCCTGGAGCTGTACCCACC-CAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACC

a score=7451
s chr3           104305463 411 + 160039680 ccataactgagcagaccactaacttccaccaatccagaagctaaaatgacatcagataggctttggggcctagagagaagcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGT---ACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAG-CCATCTCTCAGATATACCCACCTCTCAGA--TGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccaccaacgtattttacacttg
s HiC_scaffold_1 145462421 404 + 233722169 CCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGA---GCT---GTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCA----TCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCA-CCCAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACCCCAGGGCTCTACCC-CATTCCAGATCTGCACCTATCCCAGAGCTGAATCCCCATCCTA---GCACTTGT-TTTCGAAGGTGCTTAATCATGTACTCTAAATGTG

a score=7485
s chr3           104305491 346 + 160039680 ccaatccagaagctaaaatgacatcagataggctttg--gggcctagagagaagcttcccccaatccactgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCA-------------TCTCTCA---GATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTA-cccatctctcagatgtaccc
s HiC_scaffold_1 145462382 358 + 233722169 CCAATCCAGG-GCTGTACCCACCTCAGA---GCTGTACCAATCCCAGAGCTGTACTCACCCCAG--AGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCACC-CAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACCCCAGGGCTCTACCC

a score=9041
s chr3           104305491 368 + 160039680 ccaatccagaagctaaaatgacatcagataggctttggggcctagagagaagcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCT------------------------------CTCAGA--TGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccaccaa
s HiC_scaffold_1 145462146 396 + 233722169 CCAATCCAGA-GCTATACCCACCCCAGA---GCT---GTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACCCGGAGCTGTGCCTATCCTGGAGCTGTACCCACCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAA

a score=8372
s chr3           104305532 325 + 160039680 ctagagagaagcttcccccaatccactgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462049 321 + 233722169 CTAGacaaatgct-ctgccactgagctgtacccacCCCAGAGCTGTACCCAACCAGAAGCTGTACCCACC-CAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCA-CCCGGAGCTGTGCCTATCCTGGAGCTGTACCCA-CCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACC

a score=8595
s chr3           104305541 316 + 160039680 agcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCT-------------------------------CTCGGA--TGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462155 351 + 233722169 AGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACC-CGGAGCTGTGCCTATCCTGGAGCTGTACCCACCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACC

a score=6084
s chr3           104305541 255 + 160039680 agcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAG-CCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGA
s HiC_scaffold_1 145462510 256 + 233722169 AGCTGTGCCCAATCAGGAGCTGTACCCATCAA-GAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCA-CCCAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACCCCAGGGCTCTACCCCATTC-CAGATCTGCACCTATCCCAGA

a score=7451
s chr3           104305541 313 + 160039680 agcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATC--------------TCTCAGA--TGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTA-CCCATCTCTCGGATGTAcccatctctcaga--tgtacccatctcttggatgtaccc
s HiC_scaffold_1 145462442 333 + 233722169 AGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCACC-CAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACCCCAGGGCTCTACCCCATTC-CAGATCTGCACCTATCCCAGAGCTGAATCC

a score=8509
s chr3           104305541 316 + 160039680 agcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462088 316 + 233722169 AGCTGTACCCAACCAGAAGCTGTACCCA-CCCAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACC-CGGAGCTGTGCCTATCCTGGAGCTGTACCCA-CCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACC

a score=8702
s chr3           104305541 314 + 160039680 agcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtaccca
s HiC_scaffold_1 145462071 314 + 233722169 agctgtacccacCCCAGAGCTGTACCCAACCAGAAGCTGTACCCACC-CAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACC-CGGAGCTGTGCCTATCCTGGAGCTGTACCCACC-CAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCA

a score=10234
s chr3           104305541 316 + 160039680 agcttcccccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCC-------------ACCTCTC---AGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462323 335 + 233722169 AGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCACC

a score=7875
s chr3           104305543 314 + 160039680 cttcccccaatccactgtacccaactctgggatgtaccca--ccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462007 313 + 233722169 cttcttgcaATTCTGGGTATCAAATCAAGGGTCTCACCCAGGCTAGacaaatgc-tctgccactgagctgtacccacCCCAGAGCTGTACCCAACCAGAAGCTGTACCCACC-CAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCA-CCCGGAGCTGTGCCTATCCTGGAGCTGTACCCACC

a score=8889
s chr3           104305548 258 + 160039680 cccaatcca---ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATC--------------TCTCGGA--TGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATC
s HiC_scaffold_1 145462381 277 + 233722169 CCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCACC

a score=8131
s chr3           104305549 305 + 160039680 ccaatcc----actgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCA-------------CCTCTCA---GATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgta-cccatctcttggatgtaccc
s HiC_scaffold_1 145462415 325 + 233722169 CCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCA-CCCAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACCCCAGGGCTCTACCC

a score=10186
s chr3           104305556 301 + 160039680 actgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATC--------------TCTCAGA--TGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462375 316 + 233722169 ACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCA-CCCAGAGCCATGACTACCCCAGGGCTGAATCCACC

a score=9168
s chr3           104305557 300 + 160039680 ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGA--TGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462140 298 + 233722169 CTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCA---CCCGGAGCTGTGCCTATCCTGGAGCTGTACCCACC-CAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACC

a score=8882
s chr3           104305557 300 + 160039680 ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATC--------------TCTCAGA--TGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgta-cccacc
s HiC_scaffold_1 145462410 316 + 233722169 CTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCACC-CAGAGCCATGACTACCCCAGGGCTGAATCCACCCCAGAGCTGTGCCTGTCCCAGATCTGTAGCCCACC

a score=9538
s chr3           104305557 283 + 160039680 ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCC-------------ATCTCTC---AGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatc
s HiC_scaffold_1 145462359 299 + 233722169 CTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACCCCAGAGCTGTGCCCATTCCAGAGCTGTACCCACC

a score=6879
s chr3           104305557 232 + 160039680 ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACC
s HiC_scaffold_1 145462309 231 + 233722169 CTGTACCCA-CCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATC

a score=9437
s chr3           104305557 300 + 160039680 ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462325 299 + 233722169 CTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAG-AGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACCCCAGAGCTATACCCACCCCAGAGCTGTATCCACC

a score=8326
s chr3           104305557 300 + 160039680 ctgtacccaactctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCT---------------CTCAGA--TGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatc--------------tctcaga--tgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462259 331 + 233722169 CTGTGCCCACCTCAGAGCTATACCCACC-CGGAGCTGTGCCTATCCTGGAGCTGTACCCACC-CAGAGCTGTTCCCACTCCAGAGCTGTGCCCACCCAGGACCTGTACCTACCCCAGGACTGTACCCAATCCAGGGCTGTACCCACCTCAGAGCTGTACCAATCCCAGAGCTGTACTCACCCCAGAGCTGTACCCATCCCAGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCACCCCAGAGCTGTGCCCAATCAGGAGCTGTACCCATCAAGAGCTGAACCCACCCCAGAGCTGTACCCACCCCACAGCTGTACCCACC

a score=8655
s chr3           104305569 288 + 160039680 ctgggatgtacccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462068 285 + 233722169 ctgagctgtacccacCCCAGAGCTGTACCCAACCAGAAGCTGTACCCACC-CAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACC-CGGAGCTGTGCCTATCCTGGAGCTGTACCCA-CCCAGAGCTGTTCCCACTCCAGAGCTGTGCCCACC

a score=7638
s chr3           104305580 276 + 160039680 ccaccTCTCAAACGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGA--TGTAcccatctctcagatgtacccatctcttggatgtacccac
s HiC_scaffold_1 145462062 273 + 233722169 ctgccactgagctgtacccacCCCAGAGCTGTACCCAACCAGAAGCTGTACCCACC-CAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCA---CCCGGAGCTGTGCCTATCCTGGAGCTGTACCCA-CCCAGAGCTGTTCCCAC

a score=6875
s chr3           104305637 220 + 160039680 CTCAGATGTACCCACCTCTCAGATGTACCCACCTCTCAGATGTACCCATCTCTCAGATGTACCCATCTCTCGGATGTACCCATCTCTCAGATGTAGCCACCTCTCAGATGTAGCCACCTCTCAGCTGTAGCCATCTCTCAGATATACCCACCTCTCAGATGTACCCATCTCTCGGATGTAcccatctctcagatgtacccatctcttggatgtacccacc
s HiC_scaffold_1 145462068 219 + 233722169 ctgagctgtacccacCCCAGAGCTGTACCCAACCAGAAGCTGTACCCACC-CAGAGCTGTATCCACCTTGGAGCTGTACCCAATCCAGAGCTATACCCACCCCAGAGCTGTACCCATCCCAGAGCTATACCCAATCCAGAGCTGCACCAATCCCAGAGCTGTACCCATCCCAGAACTGTACCCATGCCAGACCTGTGCCCACCTCAGAGCTATACCCACC

a score=3451
s chr3           104500444 74 + 160039680 TACCCATGGGAGAACTCTTAGGAAGGAGTGCAATCAAGAGTTA-ACTACCAACAACCTGAGGAGATAAaaggtgc
s HiC_scaffold_1 118774677 75 + 233722169 TACCCATGGAAGAACTCTTGGGGATGAGTACAGTCAAGAGTTATACTGCTAGAGGTATGTAGGGGTCAAAAGGGC

a score=25769
s chr3           104573495 596 + 160039680 TCCCAATCAGCCTGTAACTGTGGGTCACTGTGACCCAGACAACTGCACTCTCT--TCAGGACTGAGAAATGATTCACCTTTAA---CACTCTCCTAATTTCCCTGAGGTTCTCCATG--AGAGAGGAATCACTTCAGGAGAGCAGATAAAGCCAAA-ATCCTGGTATCATTTACATGTCTGCTTAAAGGCTGTGGGATTTTTTTTTTTAATCTATTCAGTCCAAAGTTCACCTATTTGAAATTGACCACTGAGAGTTGGCCTCCTGTCTAAAGGTTTAACTGTAAGCAAACAATCTAGAAAAAAAAATTTATTTTAAGATCTTGTTTTTGATCAGACTGTTCAAAGAAGGTCTTAAGTGGGTGAAAGTTCAGTAGGCTGAAACAATAGAAACATTTGGGAGTAGAATATGGCCTGACTCACCCTTCATGCAG----------TGCCTTCACTCGTCTCCTTCATGAGACAATATGGACA----GAATTACATCTCAGAATAATTCTTC----TGATCTTTAATATTAGGAGAGCCAATTAAAAGATAACGTGTCCAACACTT-------------------------------------GGGTTGGTCTGCGCCTGGCAAATAATATCTCAAATCATCTTCGGTGAATAAAAACAAAAG
s HiC_scaffold_1 118664625 638 + 233722169 TCCTACTCAGTT-----CTGTGGGTCACCA----CCAAACAACTGCACTCCTCACTTAGCACTGGGCAAGGGTTTCCCATTAAAGTCATTCTGTTTACTCCTGTAAGGTGTTCCTTGGGAGAGAGGAAATCCTTCAGAAAAGTAGATAAAGTCAAGCATACTGGCATCATTCACGTGTCTATTTGAaaactgtaga--tttttttcttaatctcttcaGTCCAAAGTTAACCTATTTGGATGTGATCACTGAGAGTTGGCTTCCTGTCTAAAGGTTTAGCTGTAAGtaaataatctaaaaaaaaaaa---atttaaagaccttGTTTTTGATCAGACTGTTCAAAGAAGGCCTTAAGTGGGTGAAAGTTCATTAGGCCGAGACAATAGAAATATTTGGAAATGGACTATGACCT---TCACTGTTAAAGCAAGATCTTAGTTTACCTTAAGTAGCCTCCTTCATGGGACAATG-GGACAACTTGGCTTACATGTT--AAGTATTTTTCAAGTTGATTTTT-ATATTAGGAGagacaaataaaacataatacaTTCAAGCTTTTATCAAAGTCTAGAAAATCTGAGAACAAATTTTAGTATGGTTGGTCTTCGCTTGGCAAATAATCTCtttaatgattaaaaaagaataggaaaaagag

a score=42689
s chr3           104582536 968 + 160039680 TTTTTTTCGCTTTCA------TCTTCACATTGGGTGATTTCAGTCACGAATTCCACAGAGCTCTCTTTCTCAAACAATAGAAGAATCCATTTTCTGATAAACAGGTTGAAACCAAATAAATTCT-AACACTTGTATAATACAAAGATGAAACATTCTGGACCCAAAGCTCAAAGCTAATTAAGCACCAGTGGGGGCCACAGATTGAATCACCTCCAACC--CCGTTG-GCAACACTCTTTGTTCGCTTTCCTTGCTGTTGTTCCTATATCGCTTGCCGCAGGAAGCTGCCATATTGAAGCCCAATTTTTTAGTTGTTGCTCTTACGAAAAGAAAAACAAATAGGTGGTTTATTACAAGAATGTACGGGAACTTATACTCTAAACGTCCATAAATACATATTCTAGAAGCTCTTATCACCCCAGAACCCCACTACACCTTCTCTTTCATCTTTTTAAACATCCTGTTACATAAATTCCAGCTGCATCTATAGCAGGAAGAATAATAAGATAATAATTGGTCAAACATCAAAAAACATTTGGGCGGGCCTTCTCCAGACCTCTGGTCTTCTCTCCCACTGAAGCTCTG-GCTCAGGTTTCCCCACTT--------TATTAATACTTTTTTGTTGTTGTTGTTTGCCTGTTTCTTCTTTGTGCCTTTCTCCTACGTAATTACTATGAATTTTTGCCAGGTCAGGAATTTTTCTCACAAACAAATCTCAAATAATAATAATTTAAAAAGCAGACAAACAACGTCTGAAGATCTCATGTGAAGTCTCTGCAGGCACACCCTGCCGCCCTTTGCTTTC-TTCTCCATATTGACTTGGGATCCGTTGGGAGAATTGCACGTCCTCAGTTTTGGACGAAGGGGAGTAGGCAAATCCATCACCCGAGGCATTCAAGGAATTTCCTAGGAATTTCACGGGCATGGATTGGGAA--------------CAG--TTAAGGAACAACCACAC-AAATAGCCTGTGTGGGCTGGGAATC
s HiC_scaffold_1 118671692 970 + 233722169 ttttttttgcttttaactttATCTTCATGTTGGTTGACTGCAAGCATAAACTCCACACAACTCTCCTACCTGAACACTAGAAGAATACATTTTCTGATAAACAGGATGAATTCAAATAAATTCCAAACTGTTGCATAAtatagagataaaatattttggcCCCAAAGCTCAAAGCTAATT-AGAAGCAGCAGGGGCCACAGACTGATCTAGTTCCAGCCTTTCTTTGTGTTACGCTATTTGCTCACCCTGGT--CTGTCAGTCCTATAGCACTTGCTGCAGGAAGCAGCCATATTGAAATACAa-aatttacttgtttcttttttaaaaagaaaaacaaataaatgatttattCTAAGAATGTACAGGAACTTATATTCTAAACCTCCAGAAATACGTATTCTAGGAACTCTTATCACGTCAGAGCCCTATTTCAGTTtctctttaatctttttaaacATCCTGTTATATAAATTGCAGCTGCATTTATAGcaggaag---aaaaagataataattgGTCAAACATCAAAAGCCG-TTGGGTGGGTCTTCCACAGACCATCAGTCTTCTCCCCCACTGACACCCTGTTCTTAGGGATTCCCCCTTCCCAGCCACactaatgtattttt-------ttgtttgtttgtttcttcttt-ttcctttctcctgaaTAATTACTATGAATTTTTGCCAAGTCAGGATTTTTTCTCAGAAAGAAACCCCAATTAATA-------AAGAAGCAGACAAACAGTGCCCAAAGATAAGATGTAAACTTTTTGAGGGCCCAAC---CCTCCCTTTGATTTCTTTCCCCACACTGA-GTGGGATTAATTGGTGGAACTACACGTCCTCAGCTCTGTAAGAGGGAGAAAAGTT--GTTCCTGACCTG-----TGCTAGGAATTTTCTGTTGACTTCATGGA-ATGAATCTGGAGTTCTTTTCACCACCCAGTATTTATTAAGAACCGTACTAACTGTTCCATGTGGACTGTGAatc

a score=3669
s chr3           104692101 134 + 160039680 TTGTTTACACCTGAAGCCTCTCATGTCACCCAGAACTTACATTAAATACACTTGTGCATTTTCCTTTGCCTACTAGGACCTCCGC--CGTGAGCCTCAGCTGA----------ATAGGGAAAGCTA-------CTTCCCCTCCT----TACCCTCAG
s HiC_scaffold_1  61005990 157 + 233722169 TTGTTCACCTCTGAAGGCTCCCATGCCACCAAAAACTTCTATTAAATACATGTGTATGCTTCCCTCTTGTTAAACTGTCTTCCATTACAGAGGCCTCAGCCTAGAACCCAGAGATAGGCAAAGAAAGGAGTCTCTTCCTCTCTTACAGTGCTCTCAG

a score=48173
s chr3           104752383 914 + 160039680 GTCATAACCAGTTTTATTGCAAAAGGACCCTGTACACATTTATCAATTCTAGTACCTTAATAGCTACCCAACAAGTCATTAACATACAGAAACATGCATCATGAAAAGCAAGAAGTATCACCCATCCCTTCTGCGTATTAGCAACTTGTCACTCCTGAGCCACAGTGCTCATATCACTGAGGTCTGAACAGTCAGTCACTCTTCCCATTCATCCTGAGTGAAAGATGGAATGACTTAAGTACAAATGCAACATATTATAAACAATTTCTTACAAAAAAAGTCACAAATTAAACCAAAGTATTTTACAGAATGTACTACAAAATGCCATAAAAACCGCCTCAACTTAAGCTCTCTCCCCCCGTATCCGGCGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTGGTGTGGATGGCACACAGATTGGTATCTTCAAACAACCCCACCAGGTATGCTTCGCTAGCCTCCTGAAGGGCACCGATGGCTGCACTTTGAAACCTCAAGTCGGTTTTGAAATCCTGGGCGATCTCCCTCACCAATCTCTGGAATGGCAGCTTCCAGATGAGCAGCTCAGTCAATTTCTGGTAACGACGGATCTCTCTCAGAGCCACGGTTCCTGGCCTGTAGCGGTGAGGCTTCTTCACACCGCCGGTAGAGGGCGCGCTTTTTCCGAGCCGCCTTGGTGGCCAGCTGTTTGCgggggggcggggggggaagggggggagggggggCTCTCCCACCGGTGGACTTCCTAGCGGTCTGCTTGGTTCGGGCCATTTTTTTTCACCCAAAGCCG-AGTCTGGGGC--CCTTGCTGAGACTGAGGCGACGCTGGAAGCGCTCGAACAAGAGCCGCAATCGGTGAGCAGAACGGGCA-GATACTCCACCAACGAACGACCAAACCGCTCTGCG
s HiC_scaffold_1 163856000 872 + 233722169 GTCATAACCAGCTTTATTGCAAAAGGACCCTGCACACATTTATCAATTCTAGCACCTCAGTAGCTACT-AACAAGAAATCATCATGCAGAAATATGCATCATGAGAAGCAAGAAACGCCACCCACCCCTTCTGCACAGTGGAGACTTGTCACTCCCGAGCACCAGCACTCACGTCACTGAGGTCTGTGAA--CAGCCACTTTCCGCATTCATCCTGAGTGAACGATGGAATGACTCAGGCACAAACACAACATGTGATAAACAATGTCTTACAAAAAAAGTCACAAATTAAACCAAAGTGTTTTACA-AATTTATTGCAAAACACCATAAAAATTACCTTCACTTAAGCTCTCTCTCCCCGAATCCAGTGGGACAACTGGATGTCTGTGGGTACAGTGGTGGCTCTCTTAGCATGGATAACACACAGATTAATATTTTCAGATAAGCCCACCAGGAATGCTTCACGAGTCTCCTGAAGGGCACCAGTGGCTGCGCTCTGAAACCTCAAGTCACTTTTGAAATCCTGGGCAATCTCTCTCACCAACCTCTAGAAAGGTAGCTTCTGAATGAGAAGCTGGGTGGATTTCTGGTAACCGCAAATCTCTCTAAGTTCCACGGTACCAGGCATGCAGCAATGAGGTGTCTTCACCCCACCAGTAGAGGGAGCGCTTTTGCC-AGCAGCTTTAGTAGTCAGATATTTGTGGGGGGAGGGG----------------------------CACCAGCGGACTTCCACGCAGTCTGCTTGGCTCTAGCTATTTTCTCTTACCCAACACTGAAGTCCTAGGCTGCCTTTCTGA----------CCTCCACCTGCACTCAGGCAACAACTGCAGacacca---aaaacagaaacaacaccCTTCCAACGAAGCACCAAATCACACTGTG

a score=12144
s chr3           104752641 524 + 160039680 AAACAATTTCTTACAAAAAAAGTCACAAAT--TAAACCAAAGTATTTTAC-AGAATGTACTACAAAATG----CCATAAAAACCGCCTCAACTTAAGCTCTCTCCCCCCGTATCCGGCGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTGGTGTGGATGGCACACAGATTGGTATCTTCAAACAACCCCACCAGGTATGCTTCG--CTAGCCTCCTGAAGGGCACCGATGGCTGCACTTTGAAACCTCAAGTCGGTTTTGAAATCCTGGGCGATCTCCCTCACCAATCTCTGGAATGGCAGCTTCCAGATGAGCAGCTCAGTCAATTTCTGGTAACGACGGATCTCTCTCAGAG--CCACGGTTCCTGGCCTGTAGCGGTGAGGCTTCTTCACACCGCCGGTAGAGGGCGCGCTTTTTCCGAGCCGCCTTGGTGGCCAGCTGTTTGCgggggggcggggggggaagggggggagggggggCTCTCCCACCGGTGGACTTCCTAGCGGTCTGCTTGGTTCGGGCCAT
s HiC_scaffold_1 184815576 492 + 233722169 AAAAAATATCTAACATTCAAAACTacaaataacaagagaaagaattttTTGAGAATG-------AAATGTTTTCCACTGTAGTGGACTC---CTAAGCATGTTCTCCATGTAT--GGTGTGGTGGGTGGATATCTTTTGGCATAGCAGTTCCACATTTGGCAGGGATAGCTCCCAGGTTGATACCTTCAA-TGGTTCCACCAGATAGGCCTCAGACTTGCCTCCTGCAAAGCACTGATAGCTGCGCTCTGGCAGCACAGATCAGTTTTGAAGTGATGAGTAATTTCTTGCCCCAGAAGCAGGAATGGAGGTTT----GTGAATAGTTCAATGGACTTGTGATAAAGTCTAATTTCTCTACGTGTACCAGCATCCCAGACTTGTAACAGTGAGGTTTCTTTATCCCTCCAGTAGAGGACACAATCTTTCCGAGTGGCTTTTGTAGCCAGTTGTTTCT--------------------------TGGGTACTTTTACCTCTGGTGGCATTGTGGCCAGTCTGCTTTGTATGAGCCAT

a score=23992
s chr3           104752724 468 + 160039680 ACTTAAGCTCTCTCCCCCCGTATCCGGCGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTGGTGTGGATGGCACACAGATTGGTATCTTCAAACAACCCCACCAGGTATGCTTCGCTAGCCTCCTGAAGGGCACCGATGGCTGCACTTTGAAACCTCAAGTCGGTTTTGAAATCCTGGGCGATCTCCCTCACCAATCTCTGGAATGGCAGCTTCCAGATGAGCAGCTCAGTCAATTTCTGGTAACGACGGATCTCTCTCAGAGCCACGGTTCCTGGCCTGTAGCGGTGAGGCTTCTTCACACCGCCGGTAGAGGGCGCGCTTTTTCCGAGCCGCCTTGGTGGCCAGCTGTTTGCgggggggcggggggggaagggggggagggggggCTCTCCCACCGGTGGACTTCCTAGCGGTCTGCTTGGTTCGGGCCAT------TTTTTTTCACCCAAAGCCGAGTCTGGG
s HiC_scaffold_1  92197428 444 + 233722169 ATTTAGGCCCGCTCCCCGCGGATGCGGCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAGCCCACCAGGTAGGCCTCGCTGGCCTCCTGCAGCGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGACGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTAGCGCCGGATCTCGCGCAGCGCCACGGTGCCCGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGCGCGCTTTTG-CGGGCCGCCTTGGTGGCCAGCTGCTTCC---------------------------GCGGGGCCTTGCCGCCGGTCGACTTGCGGGCGGTCTGCTTCGTTCGAGCCATAGCGCCCTCGTTTTAACCAAGAC--ACTCTGGG

a score=10580
s chr3           104752725 365 + 160039680 CTTAAGCTCTCTCCCCCCGTATCCGGCGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTGGTGTGGATGGCACACAGATTGGTATCTTCAAACAACCCCACCAGGTATGCTTCGCTAGCCTCCTGAAGGGCACCGATGGCTGCACTTTGAAACCTCAAGTCGGTTTTGAAATCCTGGGCGATCTCCCTCACCAATCTCTGGAATGGCAGCTTCCAGATGAGCAGCTCAGTCAATTTCTGGTAACGACGGATCTCTCTCAGAGCCACGGTTCCTGGCCTGTAGCGGTGAGGCTTCTTCACACCGCCGGTAGAGGGCGCGCTTTTTCCGAGCCGCCTTGGTGGCCAGCTGTTTGCgggg
s HiC_scaffold_1  92682524 349 + 233722169 CTTAAGCAGGTTCTCCACCTCTGCAGTGTTCTATCGGG---TAATTTGGCATCACTGTTACACATTTGGCATGGAGAGCACACAGGTTGGTATGTTCAACCAGGCTAATCAGAAAAGCCTTATTTGTCTCCTGCAAAGCACCAACAGCTGTGCTCTGGAAGCGCATATCTG-TTTGAAGTCCT----GATTTCTCCCACCAGATGCTGGAAAAGGAGTTTGAGAATCAGAAGTTCATTGAACTTTATTTA-------ATTTCACTGAGAGCCACAGTCTCAGGGTTGTGACAGTGATGTTTCTTCACCCCTCCAATAGAGGGTGTGC-TCTTAAGAGCAGCTTTTGTAACTAGTTGTTTCCTGGG

a score=23896
s chr3           104752725 440 + 160039680 CTTAAGCTCTCTCCCCCCGTATCCGGCGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTGGTGTGGATGGCACACAGATTGGTATCTTCAAACAACCCCACCAGGTATGCTTCGCTAGCCTCCTGAAGGGCACCGATGGCTGCACTTTGAAACCTCAAGTCGGTTTTGAAATCCTGGGCGATCTCCCTCACCAATCTCTGGAATGGCAGCTTCCAGATGAGCAGCTCAGTCAATTTCTGGTAACGACGGATCTCTCTCAGAGCCACGGTTCCTGGCCTGTAGCGGTGAGGCTTCTTCACACCGCCGGTAGAGGGCGCGCTTTTTCCGAGCCGCCTTGGTGGCCAGCTGTTTGCgggggggcggggggggaagggggggagggggggCTCTCCCACCGGTGGACTTCCTAGCGGTCTGCTTGGTTCGGGCCAT
s HiC_scaffold_1  92213458 412 + 233722169 CTTAGGCGCGCTCCCCGCGGATGCGGCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAGCCCACCAGGTAGGCCTCGCTGGCCTCCTGCAGCGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGACGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTAGCGCCGGATCTCGCGCAGCGCCACGGTGCCCGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGCGCGCTCTTG-CGGGCCGCCTTGGTGGCCAGCTGCTTCC---------------------------GCGGGGCCTTGCCGCCGGTCGACTTGCGGGCGGTCTGCTTCGTTCGGGCCAT

a score=20184
s chr3           104824546 581 + 160039680 TTGGTAGCATAGCCTCTTCAGCAATTGGTGGATCACTAAAAGCCACTGAAGCACTGGAAGTGCTTTAAAGCACAGGGGTAAAAA-GTACTCAACAGATACTCTGTAAAAACCAGTCCTAGGACTGCATGGCTAGG-AAATGTTCTAAACAGTAAAATGACTTCAGGATATAGCT--CTTCGACATTAAATGTAGCAGAATTAA---------AAAAAAAGATTTACAAGTAGATATAGTGATAACAGAAAATTACAAAGCAAAGAACACACACAAAAGAATCAAGACAGTGCTGTAGGTTCAACAGTATTCCATGAGGCTAGAAGATCTGTTAACTTTGTTAA--CTAGCAAAATATCACTCTTGTTTGTTTATAAATCACTTATTCGTCATATGACCACACCGTGTTGAATCCTTTTCTTTCCATGTACTGGAGACTCCTAGAGAC------GGCCTTTAAGCATTCTGCATTTCTTTGCCAATCTTGTAACTGAGTATCTTGTTCCAGTCGATTTTGGTGCGGGTAACTGGAAGCTGCCGGCGCAAGGCCTTGAACGTGGTGTCTGACATAGTTTGGTAATTTTCACTAATTGCTGTCTG
s HiC_scaffold_1  49300351 575 + 233722169 TTTGTTGCACAACTTCTTTAGCTATTGGTGGATCAGTAAAAACCATTAAACTACTAGAAGTACTTTAAAAAGTAGGGATAAAAGTGTACTGAGCACAGTACCTA-AATCATCAGTAACACGACACTATGGCTTGGAAAATTTGCTAAGCAGTGAGATAACTCCAGTGTAGGTCCTGCTCTATCAGTTAGGGTAGCAGAATTAATAACACCTGCAACAGAGGTTTACAAGCAGATACACTGATAACTGAAAATG----------------ATGTAAGAGAACTAAAGTGATGCTAGAGGTTTAGCAGTATTTCATGAGGCTTGAAAA-CTGTCAACTTTTAAAACCCTAGAAAAGTATCACACTCGTTTG----TAAATCACTTATTTACTGCAGGGCCACA---TGTTAAATCCCTTTCTTCCTACCCAGCGAGGAACCCCACAGTCCAGTCGGCCCTTTGAACACTCTGCACGTCTTCGCCATTCTTGT-ACTGAGTGTCTTGTTTCAGTCAATGttgacacaaacaaatggaaactgccAGATGCAGGCCTTGAATGCAGTGTCTGATACTGTGGGATAA-TTCCACTAAGTGCGGATTG

a score=6853
s chr3           104839778 212 + 160039680 AACAGTACAGAAGCCGTTGGAATAATGATCTTTCACATAGGCTCTCAGAGCACTGTCACACGACTCCCTC-CAAGACTTCAAGCCTC-CATCCACATCCTCTGGCTGCGGGTCACTTGCTTCTTTCCGTAAATGATCAAACTTAAAGGAAATTTGGTTTCTTGGATCTAAAAATCTGCTGTTACCAAGGTCACCATGCTCTGTAATTAAGACCT
s HiC_scaffold_1  49301203 189 + 233722169 AACAGGGCAGAAGCGGTGAGAGTGGTCACCT--------------CAGAGTA--GTTGTAGGGTTTTCTTTCAAGGCTCCAAACCCCTCATCTACTTCCTCTGGCTGGGGA-------CTTCTTTGCACGAGTGATCAAACTGCAAGGACATTTGGTTTCCTGGATCTAAAGCTCTGCTGTCACCAGG--CCCTGTCATCTGCGATGAAGACTT

a score=16826
s chr3           104915854 359 + 160039680 tatatCCAAAATGTGTTTATTGGGAAGGTTCCCACTCATCTTCAATCAGGG-GCTTTCAGTGCTGCTTCCTCCTGAAGGAGCCTCCTTCTGTCAGCCTTGCTTTTCCACCTGTAGGATGACAGAGGACAGTGGAGCAGCCAACACACAAGACTACTGTTTGTGCATGGCTGAAGACCGTGGTGATTTTATAGCACCTG-------GGCATTTCACATCGATAAAGAAGAAATTGGGGCTCTGCACCAGGCGCTTTTTCTTGTGTTTCCTCTTCTCCTCTTCTGGAGAGGGGTGGAGGAGATCCTTTGCGAGAGGCATGTTCTCGTAGGGAGGTCGTCACTGCCCGAAAGGCATTTTTTTCTTTATAT
s HiC_scaffold_1  92900337 350 + 233722169 taaatccaaaATGTGTTTAATGGGATGGCTTC-AGTCACCTTGATTCAGGGTACTGTTAGTGCTGCTTTTTCCTGAAGGAACATCCTTCTGTGAACCCTGCTTTTCCTCCTGTCAGCTGGCAGAAGACAGTGGAGCAGCCAACACACAAAACTA--GTCTGTGCACAGCTGAAGAT--TAGTGATTT--TAGCACTGGGCAGTATGGCCCTTCACCTTCACAAAGCAGGAATTGGGGCTCTGTACCAAatgttgct-----tgttttttcttctttttctctgagaAGGGAT---GAAGATCTTTTGTGTGAGGC--GTTTCCACAGGGAGGTTGTCACTACTAGAAaggctgtttgttttttatat

a score=4112
s chr3           104985184 120 + 160039680 ACAAAAACA-AACAAAAAACTTTTTTCAGTTCCTTCTTTTTATTAACC---------------CACACAACTACTTGTCTTCTGATTTGTTGAAGCAATAAGTCATACAACACTTGAAAAAAGAAACTTTTTAAAA
s HiC_scaffold_1  86945849 133 + 233722169 ACACAAACATGATGAAACActtgtttaa---tcttttttttcttagctGAAGTCTTGTATTGACTCATAGTTACTTGTCTTCTGGTTTGTTGAAGCAGTAAGTCAAAGGGCACTTGCCACAATAATGTCTTTCAAA

a score=5286
s chr3           105138753 398 + 160039680 tccTGTCT-------CCTTGTGTTACTACAAC-ATAGCACCTGACTCTGGCAGTACCT---AGTGAAAGCA---------TTTTGTTTGCTTCACAATGGAGTCCAAACAGCATGGTGCTAGCATCAGGTGAAGGCTCTGGCTGCCTTATAGCAGCAGAGAAAGAGGAGGGAAAGTGGACACATGCAAAGACAGAGGTCACATGATAGGACAGGAAGGAACAGATAGGGGAGAGGCCACACTTGTTC-TTTGTAGTAATCTG----TATGGGCAGGAGTTAGTC------------ACATCCAACCTACTCCTCAAAAGTAGAGTTAGTCTCTTCGCTATGGAAGTTTTGGACCAACCACCTCCTGCTAGACCCAGCCTCAGGAGGGTCTT--AGAACTTTCTAGTAGGTACCAGGATTCCAGCACATGAAACTCTT
s HiC_scaffold_1    335848 415 + 233722169 TTCTGTCTTAATCCACTTTGTGTTGCTACAGTGAAATTATTTGAGTCTGG--GTAACTTAAAGAGAAAAGAGGCTTGTGATTCTGGTGGGTGGACG-----GTCTAGACTGTGTGGTGTCAGTGTGGGTAGGGCCTTTTGCCTGTGTCATAACACGACAAAAACAGAAGGCATAGTGGGTGTGTGCAAAGAGAGAGGTCACATGGTCAGAGATAAAGCA-----------AGAGGCCAGGCTTCCTCTTTTATAGCAACTtgattataaagaaaaaacctAGTCCATTCCCGAAAGACTTGCATTAAGCCTCCCATGTGTA----TGATCACACTATTATGACTAGTATGACCTGGTCACGTCCCACAAGGCTCTGCCTCTTAAAGATCTCTACGACCATTACAGTGGAAACCAGGTTTCCCGCATAAGAACCTGTT

a score=3682
s chr3           105377325 115 + 160039680 AAATGAGTCTTATTTTGGCTCAGAATTTCAGTGGAAGGTCGAGGGGCTGCATCTGGAGATGGCCTTCTTTCTGGCAGAATCAGGACGCCACGGAGGGAATTATACGGTGAGATAT
s HiC_scaffold_1  56782715 112 + 233722169 AAAGGAGACTTATTTGGGTTCATGATTCTGGTCCAAGGTTGAGAGGCCCTATCTAGTTATGACCTTCTCTCTGACAATCCC---ACACAACACATGCAGTTGCGTGGCAAGAAAT

a score=3718
s chr3           105377325 80 + 160039680 AAATGAGTCTTATTTTGGCTCAGAATTTCAGTGGAAGGTCGAGGGGCTGCATCTGGAGATGGCCTTCTTTCTGGCAGAAT
s HiC_scaffold_1  68806530 80 + 233722169 AAAGAGGTTTTATTTGGTCTCATGTTTCTGGTTTAAGGTCAAGGGGTCCCATCTGGTAACAGCCTTCTTGCTGGCAGAGT

a score=4700
s chr3           105459055 129 + 160039680 GAGTACTTCTTTGACCGTGACCCGGAAGTGTTCCGTTGTGTGCTTAACTTCTACCGCACCGGGAAGCTGCACTACCCACGCTATGAATGCATCTCTGCCTACGACGATGAACT-GGCCTTCTATGGCATC
s HiC_scaffold_1 115692521 130 + 233722169 GAGTTCTTTTTCGATCGGCACCCGGGCGTCTTTGCCTACGTGCTCAACTACTACCGCACCGGCAAGCTGCACTGCCCCGCCGACGTGTGCGGGCCGCTCTTCGAGGAGGAGCTCACCCTTCTGGGGCATC

a score=7057
s chr3           105459495 429 + 160039680 TTGCCTGGACACTGCCTGTGTAATGATCTTCACAGTGGAGTACCTCCTCCGACTCTTTGCGGCACCCAG-CAGATACCGCTTCATCCGCAGTGTGATGAGCATTATCGACGTTGTGGCCATCATGCCCTATTAC------ATTGGCCTG---GTCATGACCAACAATGAGG------ACGTGTCTGGGGCATTTGTCACACTCCGGGTCTTCCGTGTCTTCAGGATCTTCAAGTTCTCCCGACATTCCCAGGGTCTACGGATCCTGGGCTACACCCTGAAGAGCTGTGCCTCAGAACTGGGCTTTCTTCTCTTCTCCCTTACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCTGAGAA----------GGGCTCCTCTGC-----------------CAGCAAGTTCACAAGCATCCCTGCATCTTTCTGGTACACCATAGTCACCATGACTACACTGGGGTA
s HiC_scaffold_1 115703146 471 + 233722169 TTACattgagggtgtgtgtgtgctgtggttCACGCTGGAATTCCTGGTGCG-CATTGTGTGTTGCCCAGACACTTTGGACTTTGTCAAGAATCTGCTCAACATCATTGACTTCGTGGCTATCCTACCCTTCTACCTGGAGGTTGGGTTGAGCGGCCTGTCATCCAAGGCGGCCCGTGACGTGCTAGGCTTCTTGCGCGTGGTGCGCTTTGTGCGTATCCTGCGAATCTTCAAGCTCACGCGCCACTTCGTGGGGCTCCGGGTCCTGGGTCACACCCTGCGTGCCAGCACCAATGAGTTTCTGCTGCTCATCATCTTCCTGGCCCTAGGTGTGCTCATCTTTGCCACCATGATCTATTATGCTGAGCGTATTGGTGCCAGGCCTTCCGACCCACGGGGCAATGATCACACCGACTTCAAGAATATCCCCATCGGCTTTTGGTGGGCTGTGGTCACCATGACAACGCTTGGGTA

a score=13998
s chr3           105694679 197 + 160039680 CAGATTCTCCTCTGCTCAAGGCCTGAGTTGATTGATTGCCCCATTTAACACCACTGCCCCAATCTTTAGAGAGGAAGGCAGAATGTTTGCTCTTCTTCTGAGAAAGGGGCCCAATTCATTCTTGTCCAAGCAGCATAATAAATAACCTGTCCCTTTTGGCAGGGAGTTTATTAGAGACTGATGGGACATTTAACAAT
s HiC_scaffold_1 117435976 193 + 233722169 CAGGTTGCCCTTT-CCCAAAGCTTGAGCTGATTGATTGCCCCATTTAGTACCAC---CCTAGTCTTTAGGGAGCAAGGTGGCATGTTTGCTCTTCTTGTGAGAAAGGGGCCCAATCCATTTTTGTCCAGGCAGTGTAATAAATAACCTGCCCCTTTTGGCAGGGAGTTTATTAGAGACTGATGGGACATTTAACAAT

a score=3889
s chr3           105731958 121 + 160039680 GCTCAGAGCTGCTGCTGACTTCAGGT-CTAGAGCAGCAAACATGATTTCTTTTTAGGCTTCTTCTTTTCCACTGGTGTTTTTCTATTTATCTGTCTGACCAGGTCATAAAATATCTAGGTAA
s HiC_scaffold_1  79448755 122 + 233722169 GTTCAGAGCTACAATACATTTAGTATATTAAAGCAGCTGACATGATGACTCATTATGGGCCTTCCCAGGCACTGGAGTTTTTCTGTTAATTTGCCACACTAGGTCATAAAAGATctcattaa

a score=10185
s chr3           105737752 146 + 160039680 ACCTCATTAACGTTGATCTTTGACTTTGCAGAAGATTCTAAAAAGGCACAGTTACACCACTGTCTTGCTAAATTCTGGCCTTGTTCTTTGCCAACTACCCGTTCATCTTCCAAGTCACATTTATTGCCAACCAAAATCATTGGAAC
s HiC_scaffold_1  79448867 146 + 233722169 ATctcattaacatttatttttgattttgtagaAGATTCTAAGAATGCACAGTTGTTCCACTGTCTTGCTAGATTCTGACCTTGTTCCTTTCCTACAACTCTTTTATCTTCCAAGTCACATTTATTACCAACCAGAATCATGGGAAC

a score=9853
s chr3           105739511 144 + 160039680 ACATCTTCTGTGTCTTTAACCCGTAAAATCTGTTCTCTCAAGTCTTGTAAATCATTAAACGTAGACTGAGCTGTAATTGAATAAACTAGTGCAAACCCTTGGCCATTCTTCATATACAAATCCCTCATTGCTGTAAATTGCTCC
s HiC_scaffold_1  79449011 144 + 233722169 ACATCATCAGTGTCTTTAACTCCAAGAATCTGTTCTCTCAGATCTTGTAAATCATTAAATGTGGATTGTGCTGTGATGGAATAAACTAAAGCAAAGCCTTGTCCATTTTTCATGTATAAATCTCTCATTGCTGTAAATTGTTCC

a score=5654
s chr3           105745880 101 + 160039680 GCACACACAGCTTTGCGTTT--------TACCTTTCTGTAGGAATCTTCTATCGTTGGGTCATATTTTTCAACAAAAATCCCCTGAACAAACTGAACTGTCTGAGAGGA
s HiC_scaffold_1  79449180 109 + 233722169 GCATACACTGCTGTGCATCTACTTCAACTTGCTTTCTATAAGAATCTTCTATCGTAGGGTCATATTTTTCAACAAAAATGCCTTGAAAAAACTGTACAGTCAGAGCAGA

a score=4508
s chr3           105750244 62 + 160039680 CAGAGCAGACTTCCCCACGCCTCCTGAACCAAGGACTACTAGCTTGTACTCACGCATGATGC
s HiC_scaffold_1  79449280 62 + 233722169 CAGAGCAGACTTTCCAGTGCCTCCTGAGCCAGGAATGACTAGCTTATACTCACGCATGATGC

a score=5826
s chr3           105929422 204 + 160039680 TCAAAAACATAAAGCAAAAATCTAGCACC--TTGGGGGCCACCAACAC-------AGTACAAGTGTATGGCTTTGGCACACCTGGTGACTCCTCTGTTG-TAAC-CCATAAAGACATATAGTGCTTCTTTAAAGTATCGTCTTTGAGATATGTGATGGCTTTTCAGACATGTATGCATGTCACTGAACAGGTAGT----ACTGAAATGAACGCAAAGAT
s HiC_scaffold_1 209881593 219 + 233722169 TTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTGGGCCACCAACCCTGTGTCCAGCCCCACTGTTTAGCCTGGGCACACCTACCATCTCCACCATTGGCAACGCCAGAATGGCACACAGTGCTTCTTTAATGGGACTTCCTTCAGGTACTTGGTGGCCTTTCAGATATGCATACCCTTGATGGCCTGGGTATTAAACATGAAGATGAACATGAAGAT

a score=6004
s chr3           105935802 221 + 160039680 TCATAGAGAAGCTGTGGAGGCAGA-----GACAAAGAAATAAGCTGGAGGTAATGGTGATATTCTGTGCGTCGTCTAGTAAGGACGTGGACCAAAGGAATAGCAGAAAACCATAGCTATAATAGGACTGAAAGACA-----TGGGGATTAAGACA---------------CAGGATGAGTCAACAGTCATTCAA------ACCTCACAGTGGCTAAGCGTTCTTTTTATTCACTTACTGA----CTCGTTGAACAT
s HiC_scaffold_1 117160287 256 + 233722169 TCAAAGATAAATTGTAGGTATAAAAATGTGACAAAGAAATAAGGTAGAAGTGATGCCAATATTCTAGGTATCCATAAGTAAGTGTGTGGACAATAGGAATGGTAGGAAACCTCAGCTGAGGTAAGACTGGAGGACAGAGACTTGGGACCTGGATATGCGAAACAAAATAGCACGATGAGGCAATGATTACTTAAGCATTTGCATCTCAGTGACTGAGAATTCATTTTCTACTCCTTCAAAGAGTTTTATTGGACAT

a score=4986
s chr3           105959542 90 + 160039680 CTCGTCGAGTCTGGGTCTAGGTTAGATTTGGAATCGTGGAGATGCGGAAGGACACCCCTCCTCCGCTCGTGCCCCCGGCGGCCCGCGAGT
s HiC_scaffold_1 117142180 89 + 233722169 CTTGTGTAGTTTGAGATTAGGTGAGATTTGGAGCGGTGGAGATGCGAAAGGAAACCCCACCTCC-TTTGTGCCCCTGGCGGCCTGTGAAT

a score=6464
s chr3           105994106 222 + 160039680 ACTGTATATGATAAAGGAAACTGCATATGCAGATTCAGTATTGTACATCTATGGGCAATTAGGTGGATACTGAGAATGGGACTTGTCAACCCAACTTGCAGGGTCAGCTGCAGTGCCCTGTGTTAAGGCTGTTTGAAGTTCTCAACCCACCttttttttttttttttttttGCCAATAACATTGTAAATAAAAACCATCATACATCCAAAAAAGAAAAAAAG
s HiC_scaffold_1 208431913 177 + 233722169 ACTGTACTTTATAAAAGAAACTCTACTTGCAGATTCACTATTGTATATCTTTGAACAATTCAATG--------GAATGGAAC--ATTAGCTTAA----CATGATCAACTACAGTAGCCTGcg-------------------------------ttttttctaatcttttttccCAATAAAGTTGtaaataaagaacattaaacatcaaaataaaagaaagag

a score=4530
s chr3           105994598 86 + 160039680 AAGataattttataattatatttatGTACAGAAAACTTA-GTGTACATTTAGCCCAGTTTAGTGACGAGTTCTTTAGCCTTTGCCTT
s HiC_scaffold_1 194457620 83 + 233722169 AGgacaattt----attgtttttatgtacaAAACACCAAAGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTT

a score=4659
s chr3           106017976 120 + 160039680 CACTAAGAGGGCATTCTTCAGGGTAGATGTCAGAGGGAATTGGCCCTGGTTGCAGAAAGAGCCAGTGAAGTCATCCATATCAAGGGTCCATAACATGGCACCTCCCAGGTTGTTCTGTTT
s HiC_scaffold_1 117115337 116 + 233722169 CACCAAGAGCTCATTC---AGGATGTATACCAGGGGGAAAGGGCCAGTGCCACAGAAAGTGCCTTTGACATCATCCATGTCCAGTGTCCACACCATGGCACCTCCAAAA-TGTTCTCTCT

a score=3774
s chr3           106018190 155 + 160039680 TTACCTTGATTCGAAAACTCTTGACATTATCATAGCCAACCCATTTGTTTCCCTGATAGGCATAGGGTACTTCCTGCGCAGAATCCCAGGCTTCAGTGGCTCCATCATTCAGGAAGGAGCAAATCT-TCAAGAG----------------ATACAGTTCAAGAGATAAAGAC
s HiC_scaffold_1 117118368 169 + 233722169 TCACCTTGTAACTGAAGCTGGTGGCATCATCATAGCCAACCCACTCATTCCCCTTGTAGGCATATGGAACATATTGATAATCAATCCAGTGCTTTCTTGCTCTTTGG---ACAAAGGAGCAAACCtgtcaggaggatcacagtgagtccCATATAGTGCCACAGAGAGAGAC

a score=4919
s chr3           106019134 194 + 160039680 ACCTCATAATAGGCCCAGGTGCCAGACTCTTCTGTGTAGGGCCCTAGTG-TACCAGCACTAGCAGTAGGAGCACTTATTCCATTGTTGGAGGGGTCACTCAGGGTGAAGGTTTGTCCATATGCTGGGAATCCAACAATGAGCTTCTCAGGTGCTGCCCCATTTTCATTCCAGTAGGTCATGATGTAATCCTGCAG
s HiC_scaffold_1 117120005 194 + 233722169 ACCTCATAATAAGCCAAGAAGCCAGCTTGTTTGGTGTACTTCCCTGGAGATGCTGGTCCCATC-GCTGCAGCCTGCAACCCGTTCTTAGAAGCTGAGACGAGGCGAAAGGTACGTCCATATGTGGGGAGCCCCATGATGAGCTTCTCTGAGGGTGCCCCAAGCTTTCGCCAGTAATTCATAGCATATGCCTGTAG

a score=21088
s chr3           106042980 504 + 160039680 CATCCTCGCTATCCGAGTCAGACTCAACGTCTAAGTCCTCATCACTGTCTTCCTTCCGTTTGCAGCTTCTTCTACAGCCAGAACCTTCATTTTCAGTATTTTCTGGAGCTTCTGGTTCTTTATTAAACAGAATAATGATCTCCTCT-------TTCTTTCCATATTTGGCACAAACTTCAAGTTCACAGGCACATGGTCTTCACATTATGTGGTCAGAGTCCTTTACTGTCTTTTGTAAACATTTAACACATTTCTTAGGCTTTGACAGTGGCTTGTATTTGCTGTATTTT-ACACTCCATTCAAGAACTTCTTTGCAGCATTGACATACTCCATCATGACGTTTTGCATTAATTTTCTTGGTCTGAACACTCTTATCAAACTTGTCATGTTTGAAGGTGAACGTAGTCTGGTGCTTCTGAGGCCAGGACTGAGTCACGTTGCCTTTCTGGGAACTCACCACCAAAATCTCAAGCACCATAAGTTGGTTCAGCATTTAAATTGCAGGAAAGA
s HiC_scaffold_1  26422791 487 + 233722169 CATCTGCGCCATCTAAGTCAATATCAAAATCTAAGTCAtca-------cttcatttcttttgcaGCTTTTTGTATGACCAGagcttt-attttcaatatttgctGG---------TTCTTTATTGAACAGAATAAcaatgtcttctcttttttttttttacacatttt-cacAAACTTCAAGTTCATAAGCACATAGTCTACCCTTCATGTGATAAGAATTGTTCACT----TTTGTAAACGTTTAACACATTTTTTAGGTTTTGATAAtggtttgt--ttgctgtttttttaCCTACCATTCAAGAACTTCTTTATGATGCTGACATAAACCATCATAAActtttgctttagttttcttGGTCTGAACTCTCTTACCACGCTTGGCATTTTGGACGGT-AACATATTCTGGTGTTTCTTAATCATGGATGGAGCTAAGCTGACTTTCTGGGAGCTCACTGCCGAAACTGCGACCATTTCCCATGGGTGCGGCAGAAATGTCACAGTGAAGA

a score=8352
s chr3           106043106 117 + 160039680 ACAGAATAATGATCTCCTCTTTCTTTCCATATTTGGCACAAACTTCAAGTTCACAGGCACATGGTCTTCACATTATGTGGTCAGAGTCCTTTACTGTCTTTTGTAAACATTTAACAC
s HiC_scaffold_1  58212394 117 + 233722169 ACGGAATAAcaatgtcttctttctttccacattttgcaCAAACTTCAAGTTCATAAGCACATGGTCTACACATAATGTGGTAAGAATCCTTCACAGTCTTCTGTAAACATTTAACgc

a score=8633
s chr3           106043210 122 + 160039680 AAACATTTAACACATTTCTTAGGCTTTGACAGTGGCTTGTATTTGCTGTATTTTACACTCCATTCAAGAACTTCTTTGCAGCATTGACATACTCCATCATGACGTTTTGCATTAATTTTCTT
s HiC_scaffold_1  58226139 121 + 233722169 AAACAACTCAC-CATTTTTTAGGCTTTGATAATGGTTTATATTTGCTGTATTTTACCCGCCATTCAAGAACTTCTTTACAGCGCTGACATACTCCATCATGAAGTTTTgcattgattttctt

a score=8346
s chr3           106043329 121 + 160039680 CTTGGTCTGAACACTCTTATCAAACTTGTCATGTTTGAAGGTGAACGTAGTCTGGTGCTTCTGAGGCCAGGACTGAGTCACGTTGCCTTTCTGGGAACTCACCACCAAAATCTCAAGCACC
s HiC_scaffold_1  58258600 121 + 233722169 CTTCGTCTGAACAGTCTTATCAAACTTGTCATTTTTGAAGCTAAATGTATTCTGGTGCTTCTGAGGCCTGGAACGAGCCACATTGCCTTTCTGGGAGCTCATCACCGAAATCGCTACCACC

a score=41525
s chr3           106090912 1163 + 160039680 TTGCATGGCATTTTAAAGA-ATTAAACAAAGTGGGAAGAAGCAGCGAGGACGACCCCCGGACGGAGCAAACCCTCGCGCTGCTGTATACC-CATGTTCAGCGCCGACGTACC-CTGCCGCCACCATGCCCAA-AGAAAGGTTGAAGGGAATGCTAAAGGAGACAAAA-CTAAGGTGAAGGACGAGCCACAGAGAAGATCTGCAAGGTTGTCTACTAAACTTGCTCCTCCAAAGCTAGAGCCCAAGCCTAAAAAGTCCCCTGTGAAGAAGGGAGAGAAGGTACCCAAGGGGAAGAAGGGAAAAGCCGACGCCGGTAAGGATGCGTATAATCCCGCAGAAAATGGAGATGTCAAAACAGACCAGGCACAGAAAGCTGAAGGTGTTGAAGATATCAAGCGATGTGTGTGCATTTTTGATAACTGTGTACTTCTGGTGACTGTATAGTTTGAAATACTATTTTTATCAAGTTTTATAAAAATGCAGAATTTCATTTTACTTTTTTTTAAAAGCTATATTGTTAGCACACAGAACACTTCATTACTGG-GTGGGGGAAGGATCATGTGTCAGTAACAAAATCTCTCCCAAGCTGGATTGAGG-ACAGAAAACCTCTTTCCCTGATAATTTTGAAAGACTCCTGTTGGCTCCCAGAA---GAGATATCCTGGTCTTGACCTAGGTGGCCACCAAGGCACAACAATGACTTGTGGTCTGGGAAAACTATACATTCATTTTTATATCCTC-TCCCCCCTGTACTATCAACATAGAC--AATTCCATTAA------AGACCTGTTGGAACCTGGCTCCC-AAAATTG--GTTTCTAGTTTATTGGGTGATGTGGACTTTGCAGTGACTTCATTGAGTGTT--CTCAGAAGAGCACTGGTTCCTTTTATAAAAGATTGTGGATCTTCAGACTGATAATTCTG----CCATGTTCCTTTC-----CTGAAAGTCAGGGTCGGCTTGTGAATAGTTGTTAAACAATATCCTTAATGTGAAATGTCAACCCGCACTCTAAGCTACTTCCCCCTTTTCAAAGCATTGAATGAAGACTTCATTGGGTTTTATAGTGGCTTTCTTA-TCTTGGTAGTCTATACAAGAAGGGAATTTGTAAGTTATTGTA----TATTGTTGATTGTCTGCCCATGTCCTGCCTGAAGTACCATGGTTGTTTATGAAAAGTATCTTTA
s HiC_scaffold_1 202166718 1127 + 233722169 ttgCATGGTATTGGAGCAATATGAAGAGGAGTGAGAAGA------------GACCACTGGACAGACCAAAGCCGTGCACCACTGCCTCCCACTCGACCATCTGTGTCTCACCGCCATCACCACCATTCCCAAGAGAGAGGTTGGG-----------AGAAGATAAAAGCCACAGCAAAGGA-AAGCCACAGGGA---TCTGCA-GGTTGTCTGTTAA-CCTGCTCCTCCAAAGTTAGAGCTCAAGCCTGAAAAGGCCC-TGCAACGAAGGGAAAGAACATGCCCAC--------AAGGAAAGGCGCCTGCCAGCAAGGATGGGAATAA-CCTGCAGAAAATGGGGAGGCCAGAACACACCCG-CACACACAGCAGGAGATGCTGGGCATGCCAGAAGAAGTGTGTCCATGTTTGATAAC---GAACTACTGGTGACTATATAgtttgaaatactattttt-------tttataaaaatacagaattttgttttacttttttt---aagcTATGTTGTTAGCACACAGAACA-TTCATGGTTGTTGTAGGGGAAGGAGCACATGTCAGTAATACAGTGTCTCC---ACTGTATTGATGTGGGGAAAACATTTttccttgctagttttgagagaCTTCC--TAGCTCTCAGGAAGAGTGATTCCCTGACATTGACACATGTGGCCACCATGGCACAG--ATG-CCTATGGAATGGGGAAACTCCTGGCTCATTTTTATGTTATCGTTCCTTCTCTGCCATCAGCATAGGCTTACCTCCCTTAAGCCCAAAGACCTACTGGGACCTGGTTCCCCAAAATTGATGTTACCAGTATATCAGGCAGTCTGA---TGCCAGTGAC---ATTGAGTGGTGTCCCACAGGAGCAAAGACGTCCTTTCTA---GATTGTGAATCTTCATGTTGATAATTCTGTCtgccattttcatttcattgcctGAAAATCATGGTCAGTTTGTGAAAAGTTGTTAAATAACATGCTAACAGTGTAATTTTGATCCTCCCTGTA--TCATCTTGCCCTATTCAGGGCATCAAATGATGACTTCATTGGATTTTATAGTGGCTTTCTAATTTTTGGACATCCATCCAAGAAGGGAATTTGAAAGTTGTTGTACAACTGTTAACGGCTGTATGTCTATG-CCTGCCTGAAATACCATGATTTTTTATGAaaagtatcttta

a score=24483
s chr3           106091200 915 + 160039680 AAGGGAAAAGCCGACGCCGGTA-AGGATGCGTATAATCCCGCAGAAAATGGAGATGTCAAAACAGACCAGGCACAGAAAGCTGAAGGTGTTGAAGATATCAAGCGATGTGTGTGCATTTTTGATAACTGTGTACTTCTGGTGACTGTATAGTTTGAAATACTATTTTTATCAAGTTTTATAAAAATGCAGAATTTCATTTTACTTTT-TTTTAAAAGCTATATTGTTAGCACACAGAACACTTCATTACTGGGTG--GGGGAAGGATCATGTGTCAGTAACAAAATCTCT-CCCAAGCTGGATTGA--GGACAGAAAACCTCTTTCCCTGATAATTTTGAAAGA-CTCCTGTTGGCTCC---CAGAAGAGATATCCTGGTCTTGACCTAGGTGGCCACCAAGGCACAACAATGACTTGTGGTCTGGGAAAACTATACATTCATTTTTATATCCTCTCCCC--CCTGTACTATCAACATAGA-CAATTCCATT------AAAGACCTGTTGGAACCTGGCTCCC-AAAATTGGTTTCTAGTTTATTGGGTGATGTGGACTTTGCAGTGACTTCATTGA----GTGT-TCTCAGAAGAGCA-----CTGGTTCCTTTTATAAAAGATTGTGGATCTTCAGACTGATAATTCTGCCATGTTCCTTTC-----CTGAAAGTCAGGGTCGGCTTGTGAATAGTTGTTAAACAATATCCTTAATGTGAAATGTCAACCCGCACTCTAAGCTACTTCCCCCTTTTCAAAGCATTGAATGAAGACTTCATTGGGTTTTATAGTGGCTTTCTTATCTTGGTAGTCTATACAAGAAGGGAATTTGTAAGTTATTGTATATTGTTGATTGTCTGCCCATGTCCTGCCTGAAGTACCATGGTTGTTTATGAAAAGTATCTTTAttgggaacaaaacacccatggaaggagttacagagacgga
s HiC_scaffold_1  22546106 905 + 233722169 AAAGAAGAAGCTAATGTTGGCACAGGACAGAAATAA--ATGTTGAAATCAGACTTTCCAAAA-GGACCAGACACAGAAAGCTAACGGAATTGGAGATCTAGAGTGAAGTAAGTGTCTGTTTGATAACTGTGTACCTTTGGTGACAATACAGATTGAAATACTA---TTATCAAGATTTATGgaaatatgtgat----ttttatttttgcttcataaaCTATGTTGCTAGCACACAGAAC-CTTCACTTTTGGTTTTCAAGGAAGAAGTGTATGGCACTAATAGAATGTTTGAACAGATTGGATGGATGTGAGGGGAAAGACCTGTCCCTTCTAGTTTTGTAACAGTTCCCGTTGACTCCTTTTAAGAGGGATTCTCTGATGTTGACACACACAGTCACTTTG--ATATTAAT-ATCTGTAGGGTGGAAaaac--taaaattgtttttatatccCCCTCTCTATCTTCACCTTCAGCATAGACCAAATTCATTTATCCAAGAAACGTAGTAGGATCTGACCCCCTGAAATTGATTGTCCGTGTGACAAACAATCTGGATTCCCCACTGACATCACTGAGGTGGTGTCTCTCAAAAAAGCATAAGTTTGTTTCCCTTTCTAA---GTTGTAGGTCTTCTAATTGAtcattctgcttttttcatttcattctctggAAGTCAGAGTTGGCTCCTGAAAAGCTGTTAAACAACATGCAAAATGTGAAATGTCAACCCCTGCCATAAAGT-----TTCCTTTTCAGaacaacaaatgaaaattttattggattttatggTGACTTTTTGACTTGCATAGTCTAGTGAAGAAGGGAGTTTGAAA---ATTTTATACTGTTGTATGCTCTTCCA--CCCTGCCAGgggcat-----ttttttatttaaag---------agaaaacaaaaca---aaaacagaaactaaagggataga

a score=14449
s chr3           106114624 852 + 160039680 TGTCTGTTTTCTCTGTCTAGGTCTGGCTCTTCTGCTGAATGCTCAGCTGGGTAAGACACTGATTCTATGTTGTACTTTTGACAAAACAGTTAATTACCATAAAACTTAAATATCT-----TAATTTACAT----ACTGTCTG-GTTAATA-----AAATTAAGTAAAA-----ATACATTCCAGTATTGTTATATTTGGAAAAATGTAC-CAGGAGATAAAACATAT--------------------------------------------------TAGAGAAAGAGAGA----------------------------------TGGGTTTGCATTATGGGGGA-----GTAGACTTTAGCTCAGCTGCTATTGCTGGTTTCTGTAAGTTGACCACCTATGAGTTTATAATTCTTATCCATTAGTTTTTCTGAGACCACTGAGC----------------TTCCTGAACTATGGGCATTTTTGTTTCAAGATCCCCAAATGTATTT-------TTACCATCTC----------TTGATTTCCGTGT---AACAGTGCTCACA---------GTAGCCACCTATATTTGGAGATCAGGACTCTGAGGCA--GGTAGGGAAACAGAAGCAGAACCCCAACTGTTTTCACAGTTCAGTACCCAATATACCAGACCATCATACTTTTTCCTGATCACCACAGGGTCTGCCTACAATCTGATATGCTATTTCACCAACTGGGCCCAGTATCGGCCAGGTCTGGGGAGCTTCAAGCCTGATGACATTAACCCCTGCCTGTGTACTCACCTGATCTATGCCTTTGCTGGGATGCAGAACAATGAGATCACCACCATAGAATGGAATGATGTTACTCTCTATAAAGCTTTCAATGACTTGAAAAACAGGTAAAAGAAAGGGGAAAATAGATATCAAAGTT-ATATCTTTTGGACCAATAGTTACT-ACCATCATTGATTCTGAAGATGTTATTCATAACCAACAGATTTGTGATATGT
s HiC_scaffold_1 117042059 968 + 233722169 tgttctttctttctctctagatcTGTTCCTTCTCCTGAATGCTCAGCTAGGTAGTTCATTGACTCCAAGGTTTATTATTGACAAAAACTTTTTCTATCATACC-CTGAAGTACCTATGAATTATTCATAATGCAATTGTCTGCTTTAATATATATGACTTGAGTATactttacatatatacatatacatatacatgtgcacatatatacacagatgtttacatatatacatagaaagtgacagagacatagacagacaaagaggacagagacagaggtagagaaacaaggaggcagagacagaaaaatcCCAGCAAGGAAAGCTATGGGTTTGACTCATTAGGGACATCTACAG-TTTTAGACTGATTATCACTGCCGCACCTTTCAGCCTGACTACCTGAG---TTACAAACAGCACTCACTGAACTTTATAAAACTGTTGAGCGTCTTTTCTTTGAAAGCTCCTAAGCTAT-------------CCAAGATCCCAAAATGAGTCTGTCAAAGTTAAAATTTCAAGTCAACAATTCATTTCTAAGTTGAAACTTTGGTCCCATGGCCAAGAGTGTTCACATTCATGTAGAAGTTTGGCATTAGAAGCACAAGGAAGGAAGCAAACTAAGGGCA--AACTCTCAGCACAGATCACTGCC-ACTAAATCAGGGCATTGTCCTTCTT----ATCAC-GCAGGCTCTGCATATCAGCTGAC-------TTCATGAACTGGCCCCAGTAAAAGC-AGGCCAGGGGAGCTTCAAAACTGAGGACATTGACCCTTTCCTGGGTATTCATCTAATCTATTCCTTTACTGAGATGAGGAAAAATGAGATTACTGCTATTAAATGGAATGACATGA--CTCTATCAAACTTTCAATGAC-TAAAAAACAAGTACAAGAA----GAAGGCAGATATCTAATTTGGTGTCCTCTAGGTCAGGAGTTTCCAAACATCAgagattcttaaaatatattt--tagttaataaaaatttcatatgt

a score=25903
s chr3           106121469 1200 + 160039680 TTTTGTAAACAAAG--TTTCAGTAATGGAAAAAATTGCTCAAATAAGTCAAGTAAATAGTACCACATCAGTCCTACCATGAATAATTTGAGCAATCTCAATATCATAAACAGAAATGCTATTTTAAATGTCAGGAGCCAGGAATTTAAAAATTTCTCTGTT---------GCTTTATAGGAACAGCAAACTGAAAACCCTCCTGGCAATTGGAGGCTGGAACTTTGGAACTGCTCCGTAAGTTCTCTCTAGAAAACC-ACTCATTCAT-------------TTAGCATAATCCATGTCCT-----TTTATACTTCAAAATTCCAGATGGATATTA---TGAAGATTCATTAAATGATTTTTTTACTTAATAAATTATCACATCAGATCATCAATAC-------------------------------------------------------TTATCAGAAGATTTTAGATTAACTACTGTGACATT-------------------------------------------------TATAT------GGATAATTTTGGA-----------------------------TGGATGTTTGGG--ACACCAT-----------TCTCTGAGCTT---TAGCTGCCTACTTCAGAAAAAATATCTT---AAAATATATGAAGGCTGCAAGGTCTAGTGAA--GGTCCTGTATATCTTTTGTCTGTCTTTTCAAGAAAGAAAAATGAGACCATGTATATGAAATAAGACATATTTGAGTATATATGAACT-GGGGGCTTATTTGAAGATAGAA-----TGATCTGAACTGTTAGTTGGGTATTCAAAACAACAAAGGCATTTTAGGAAAATGTTTGAACTGGGAGTTTGGAAGAATAGCAAAATAAAGTGAATGCTGAGGTACTGTGGCTGGTAAGAGTAGTGATTGCAAAGAGAAACCAGGATAGCCCTGG-AATACACTTTAGTCTTCAGTCAGG-TCCTGGTCAAGGACTGTGAGGCAAAAATTGAACTTTAAACTATTTTTATTCCACTGTGTTCAAAAACATCAAGGCCTTACTCTGACTTTTTT-GGTTTCCCTCAGTTTCACTACCATGGTTTCCACTTCTCAGAACCGCCAGACCTTCATTACCTCAGTCAT--------CAA--ATTTCTGCGTCAGTATGGGTTTGATGGACTGGACCTGGACTGGGAATACCCAGGCTCACGTGGGAGCCCTCCTCAGGACAAGCATCTCTTCACTGTCCTGGTGAAGGTGAGGAAACCACGAAAAGATGTTAGCCCTATAATATTCAAAGTCTATTGTTTTTTTTTTTTTTCAATGAGGACCAGGTGCTTGCACAATAAAACCAAACATGACTGTGGGATTATAGATTTGGATTCTTAGCATAAG
s HiC_scaffold_1 117067151 1352 + 233722169 ttttttaaataaaagttttcaacACTGAGAAATATTGTTC---TATGC----TCTATTGTATTATATCAAGATGATACTAAAAAATATGAGCAGGCTTAATGt--taaaaaacaatattattttttaaaaagggaatcatggattttgaaatttctctttttaatcacTTATTTTAAAGGGACAGTCAACTGAAAACTCTCCTGGTGATTGGTGTCTGGAACTTTGGAACTGCTCCATAAGTTCTCAATAGAAAGCCTGCTCATTTGCCATTGCAAATACATTGGCCCAATGTGTTTTCTGTTGCTTTAGA-TTCACAATGTAAGATAGATAGTAATGTGCAG-TAcattaaataaatgtta-agatAATGAATTACTAGATCATATC-TCAGTACAAAGTAGGGCAAAATTTAGTTAATATAGCTAAATTGGAGTGGGTATTCTGAGAGTTCACCCACAGAAGTTTGATTATCTGCTTTCacattcttttgagacagggtttcacttggtagtgtaggctggccttgaactcactatgtagctcagggtggtcttgaacttgcagtaatcctcctgcctcagcctcttgagtgctgggattacagcatgcagatatgtgccactacacctggatGGTTATCTGCTTCCAAAACAATCTCTTTGTAAAGTATTTCCAGAGTGCAAACTC-AGAAAATCAGTTTGGTCTATTTGTCTTCTggc------agaaggaaacagaaaattataCACA---AATAGGACATTTTTAAAGGCACATAAACTTAGAAAACTATTTGGAGACAGAACATAGTGACCTGAA---TTAGCCAGGTCTTCAAAGCAACAATGGAAATTTGGGAGAA-------------AAATTGAGGGGAGGGGAAAATATAGGGAATACTGAGGCACCACTGTTGGACTGAGTAGTGGTTACAAagaaaggacaagagaaaagtagTAGAATGCTTTAACCTTGGCAAAGGATACTGATGAAGTGCTCTGAGGCTGAAATTGAGGAGTGAACTGTTCTTAATCCAGTGAGTT-GGGAACATCAAAGccttacctttctttctttcagtctcCATTCATTTTTCTACTGTGGTTTCCACTTATGAGGACCACCAGACTGTCATTACCTCAGTTATAGTTACCTCAGTTATTCCTCTGCCAGTATGGGTTTGATGGACTGGACTTGGACTGAGAGTACTCTGGCACCCATAGGAACCCTTCTCATAACAAGCATCATTTCACTGTACTGGTGCAGATGTAAAA---ACGAATACCCTTTATTCTGAGAAGGTTCACAGTCTG----------TTCTTCCCAGTAACAATTGAGTGgtcataaaa-aaaattaaacactgcgctggga------atttagctcagtggcataag

a score=4453
s chr3           106148604 173 + 160039680 TTTAAAGTAGATGTCAGAGGGAAATGTCTCTGGTGACAGAAAGAACCACTGAAGTCATCCATGTCCAGGGGCCAGACCACGGCACCTCCTAAATTGTTGTCCTTGAGCCACTGAGCCTGTTGAAACAGAGAGCATTTAGTC----------ACTTATTTCCTGGGAATCAGGCTGCAATCTCA
s HiC_scaffold_1 117115350 179 + 233722169 TTCAGGATGTATACCAGGGGGAAAGGGCCAGTGCCACAGAAAGTGCCTTTGACATCATCCATGTCCAGTGTCCACACCATGGCACCTCCAAAATGTTCTCTCTTTACAAACATTGCCTGTGAAAAT----AACAGTTTGTCAACATGCTATATTCATTTCCCTCCagactggatacaatatca

a score=4329
s chr3           106148796 127 + 160039680 CTTACCTTCAACTTGAAGCTCCTGACATTGTCATAACCAACCCACTCATTACCCTGATAGGCATAGGGTACTTCCTGGGGGGCATCCCAGACCTCAGTGGCTCCTTCATTCAGAAATGTACAAACCT
s HiC_scaffold_1 117118367 124 + 233722169 CTCACCTTGTAACTGAAGCTGGTGGCATCATCATAGCCAACCCACTCATTCCCCTTGTAGGCATATGGAACATATTGATAATCAATCCAGTGCTTTCTTGCTCTTTGG---ACAAAGGAGCAAACCt

a score=6373
s chr3           106149709 214 + 160039680 ACCTCATAGTAAGCCAGGAGTCCTGATTCATCTGTGTACTTTCCTGGTGGGCCAGTACTAATTGTAGGGGCACCAATTCCAGTCTTAGAAGGGTCACTCAGGATAAAGGTATGCCCATATGCTGGAAATCCCACAATGAGCTTCTCAGAAGCTGCTCCATGGTCCTTCCAGTAGGAAATGATTGAATCCTGTAGGGGGAGAAAGTAAAATTTTT
s HiC_scaffold_1 117120005 214 + 233722169 ACCTCATAATAAGCCAAGAAGCCAGCTTGTTTGGTGTACTTCCCTGGAGATGCTGGTCCCATCGCTGCAGCCTGCAACCCGTTCTTAGAAGCTGAGACGAGGCGAAAGGTACGTCCATATGTGGGGAGCCCCATGATGAGCTTCTCTGAGGGTGCCCCAAGCTTTCGCCAGTAATTCATAGCATATGCCTGTAGGGAGGAAAAACACAACCTCT

a score=4387
s chr3           106202555 162 + 160039680 TGTCAGAGGGAAACGTCCCTGGTGACAGAAAGAACCACTGAAGTCATCCATGTCCAGGGGCCAGACCACGGCACCTCCTAAATTGTTGTCCTTGAGCCACTGAGCCTGTTGAAACAGAGAGCATTTAGTC----------ACTTATTTCCTGGGAATCAGGCTGCAATCTCA
s HiC_scaffold_1 117115361 168 + 233722169 TACCAGGGGGAAAGGGCCAGTGCCACAGAAAGTGCCTTTGACATCATCCATGTCCAGTGTCCACACCATGGCACCTCCAAAATGTTCTCTCTTTACAAACATTGCCTGTGAAAAT----AACAGTTTGTCAACATGCTATATTCATTTCCCTCCagactggatacaatatca

a score=3736
s chr3           106202736 77 + 160039680 CTTACCTTCAACTTGAAGCTCCTGACATTGTCATAACCAACCCACTCATTACCCAGATAGGCATAGGGTACTTCCTG
s HiC_scaffold_1 117118367 77 + 233722169 CTCACCTTGTAACTGAAGCTGGTGGCATCATCATAGCCAACCCACTCATTCCCCTTGTAGGCATATGGAACATATTG

a score=5889
s chr3           106203659 206 + 160039680 ACCTCAAAGTAAGCCAGGAGTCCTTGTTCATTTGTGTACTTTCCTGGTGGTCCAGCACTAACAGTAGGGTCACCTATTCCATTCTTAGAAGGGTCACTCAGGATAAAGGTATGACCATATGCTGGAAATCCCACAATGAGCTTCTCAGAAGCTGCTCCATGGTCCTTCCAGTAGGTAATAATTGAATCCTGTAGTGACAGAAAGTA
s HiC_scaffold_1 117120005 206 + 233722169 ACCTCATAATAAGCCAAGAAGCCAGCTTGTTTGGTGTACTTCCCTGGAGATGCTGGTCCCATCGCTGCAGCCTGCAACCCGTTCTTAGAAGCTGAGACGAGGCGAAAGGTACGTCCATATGTGGGGAGCCCCATGATGAGCTTCTCTGAGGGTGCCCCAAGCTTTCGCCAGTAATTCATAGCATATGCCTGTAGGGAGGAAAAACA

a score=8987
s chr3           106275680 396 + 160039680 AAACAAATAAGATAATAAAGGCAAAACTGTTAGCCAAGGTTAAAGCATCTACATCATGACACTAATCCTCTGATAACTTTCCACAGGATCTTCCTACCAGCTGATGTGCTACTATACCAGCTGGGCTAAGGACAGGCCAAGACAAGGGAGTTTCAAACCTGGTACTATTGACCCCTGCCTGTGTACTCACCTGATCTATGCCTTTGCTGGGATGCAGAATAATGAGATCACTTACACACATGAGCAAGACTTGCGTGACTATGAAACATTAAATGGTCTGAAAGACAGGT-----AAGGACAGAGACATCTGG-TTGGTATCAG-TGTGCCAATAGTTGCTATATCTTAGTGCTTCTGAAAATGTATGTCAGAATCAATAAAG---TTGCATGATGATTCCATCAA
s HiC_scaffold_1 117042651 388 + 233722169 AAGGAAGGAAGCAAACTAAGGGCAAACTCTCAGCACAGATCACTGCCACTAAATCAGGGCATTGTCCTTCTTATCAC-----GCAGGCTCTGCATATCAGCTGA-------CTTCATGAACTGGCCCCAGTAAAAGC-AGGCCAGGGGAGCTTCAAAACTGAGGACATTGACCCTTTCCTGGGTATTCATCTAATCTATTCCTTTACTGAGATGAGGAAAAATGAGATTACTGCTATTAAATGGAATGACATGACT--CTATCAAACTTTCAATGA-CTAAAAAACAAGTACAAGAAGAAGGCAGATATCTAATTTGGTGTCCTCTAGGTCAGGAGTTTCCAAACATCAgagattcttaaaatatattttag--ttaataaaaatttcatatgtttatcacataaa

a score=10055
s chr3           106279969 1051 + 160039680 TAAAATTACTCAATACTGAAAAA----ACCTTCTGTAATGTGATGTTACGTCAGAA--AAAATGAATAGTATGAGAAAT----ATGTTTTAAAGCACCGATATTTTATATAATAGAGGCCAAGCATTTTGATATTTTGCTTTTT---CTGTCCTTTTTGAGGAACACTGAACTAAAAACTCTCCTGGCCATTGGAGGATGGAAGTTTGGACCTGCCCCGTAAGTTCTATATACATGGGCTACTA----GGCTTTGTAGGCA------------------------------GACTAGAGATGTAAAAT----------------CACAT------------------GTGGATTACT---TCACATTT---TGCAAAGTAAATTAAAGGAAATCTATTAAGTAT-----------------------GTAGGTTAACATATAAAGA----ATTAT--------------------AACAGAGCCTCAAATGAAACAGTAAACATATTTTCCAGGTATATTTATGTGATTCA---CAATTTCAAATTTG-------------GCCTGATATTTTCGGATGC-------ATCCTATG-AGATATTT-TAACTAC-------------------TAAAATACAAGCTTTTTCTTAAATTATTTCATATT-----CTCAAGACCAGAGGCTGGTCATATTTTGTTTTAGACTAACTTTTCTTGAAATA--AAACTATGGCCCCTTATTAGGAAGAAATTTTCATGTACTAGATATGAACTTGGAA---TGTTTGAAGACAAAT----ATGATTTAGGATGAACATAAATTTCAAATGCCAGGGGAAGTTTTTAGTAATTAATATGGTGCTGGGAAAATAAAGGGTATTATGAGGTA-----GGTGATGTGAGTA-------TAAAGGGAGGATGAGAGAGAAACAG----------------------GGCATCATGATGAAGGAC----AGGGTGTCAATAATCAGCTGTAAACTGTTTTGTGTACAAGGTGTCCATGTCATAGAAGTCTAACACTAACTTCTTTCAATATGCATAAGGTTCAGTGCCATGGTCTCTACTCCTCAAAACCATAAGACATTCATTCAGTCAGTTAT--------CAA--ATTCCTTCGCCAATATAAGTTTGATGGCCTCAACTTGGACTGGCAGTTCCCTGGGTCTCGAGGAAGTGATCCTAAGGACAAACCTCTCTTCAGTGTGCTGGTGCAGGTGGGTCAACTGGAAAAATTCTTTTGTCCTAAAAGGTTTA
s HiC_scaffold_1 117067160 1262 + 233722169 taaaagttttcaacACTGAGAAATATTGTTCTATGCTCTATTGTATTATATCAAGATGATACTAAAAAATATGAGCAGGCTTAATGttaaaaaacaatattattttttaaaaagggaatcatggattttgaaatttctctttttaatcacTTATTTTAAAGGGACAGTCAACTGAAAACTCTCCTGGTGATTGGTGTCTGGAACTTTGGAACTGCTCCATAAGTTCTCAATAGAAAGCCTGCTCATTTGCCATTGCAAATACATTGGCCCAATGTGTTTTCTGTTGCTTTAGATTCACAATGTAAGATAGATAGTAATGTGCAGTAcattaaataaatgttaagatAATGAATTACTAGATCATATCTCAGTACAAAGTAGGGCAAA----ATTTAGTTAATATAGCTAAATTGGAGTGGGTATTCTGAGAGTTCACCCACAGAAGTTTGATTATCTGCTTTCacattcttttgagacagggtttcacttggtagtgtaggctggcctt---gaactcactatgtagctcagggtggtcttgaacttgcagtaatcctcctgcctcagcctcttgagtgctgggattacagcatgcagatatgtgccactacacctggatGGTTATCTGCTTCCAAAACAATCTCTTTGTAAAGTATTTCCAGAGTGCAAACTCAGAAAATCAGTTTGGTCTATTTGTCTTCTggcagaa-------ggaaacagaaaattata------CACAAATAGGACATTTTTAAAGGC---ACATAAACTTAGAAAACTATTTGGAGACAGAACATAGTGACCTGAATTAGCCAGGTCTTCAAAGCAACAATGGAAATTTGGGAGAAAAATTGAGGGGAGGGGAAAATATAGGGAATACTGAGGCACCACTGTTGGACTGAGTAGTGGTTACAAagaaaggacaagagaaaagtagTAGAATGCTTTAACCTTGGCAAAGGATACTGATGAAGTGCTCTGAGGCTG---AAATTGAGGAGTGAACTGTTCTTAATCCAGTGAGTTGGGAACATCAAAGccttacctttctttctttcagtctcCATTCATTTTTCTACTGTGGTTTCCACTTATGAGGACCACCAGACTGTCATTACCTCAGTTATAGTTACCTCAGTTATTCCTCTGCCAGTATGGGTTTGATGGACTGGACTTGGACTGAGAGTACTCTGGCACCCATAGGAACCCTTCTCATAACAAGCATCATTTCACTGTACTGGTGCAGATGTAAAAAC---GAATACCCTTTATTCTGAGAAGGTTCA

a score=4134
s chr3           106319420 183 + 160039680 TCATGACAACACTGCAGTAAATAATATGAA------GAATATGCAAACCACATTGCTAATTTACATAAAGGAAACCAAGAATTT----GTTTTTATTGTGTGTGTGTGTGTTTTTTTTTTTTTTAAGAAACACAGAGCTAAAAACTCTCCTGGCTAATGGAGGATGGAACTTTGAATCTGTCCCATAAGTTTT
s HiC_scaffold_1 117067205 182 + 233722169 TTATATCAAGATGATACTAAAAAATATGAGCAGGCTTAATGt-taaaaaacaatattattttttaaaaagggaatcatggattttgaaatttctctttttaat----------cacTTATTTTAAAGGGACAGTCAACTGAAAACTCTCCTGGTGATTGGTGTCTGGAACTTTGGAACTGCTCCATAAGTTCT

a score=4380
s chr3           106388715 139 + 160039680 TTCAAGATGGAAGTCAGGGGAAATGTGCCCTGACCACAGAAAGAACCAGTGTAGTCATCCATATCAATGGTCCAAATCATGGCACCTCCATAGTTGTTCCGCTTAAGCCACTGAGCCTGGTTAAGAGAAAAATAACAGT
s HiC_scaffold_1 117115350 132 + 233722169 TTCAGGATGTATACCAGGGGGAAAGGGCCAGTGCCACAGAAAGTGCCTTTGACATCATCCATGTCCAGTGTCCACACCATGGCACCTCCAAAATGTTCTCTCTTTACAAACATTGCCTG-------TGAAAATAACAGT

a score=4286
s chr3           106388902 146 + 160039680 AAGGAACTAAC--CTTACCTTGATATGAAAGCTCTTGATATTGTCATAGCCAACCCACTCATTGCCATGGAAGGCATAGGGCACTTGCTGAGCAGCATTCCAGACCTGAATGGCTCCATTTTTCAGGAATGTGCAAATCTTTAAAAAG
s HiC_scaffold_1 117118354 145 + 233722169 aaagaacCAGTGTCTCACCTTGTAACTGAAGCTGGTGGCATCATCATAGCCAACCCACTCATTCCCCTTGTAGGCATATGGAACATATTGATAATCAATCCAGTGCTTTCTTGCTC---TTTGGACAAAGGAGCAAACCtgtcaggag

a score=3826
s chr3           106533373 72 + 160039680 GCCATGATCAAAAAGTTCTCCCAGAGGAGAGCTACTGTTAGTTCTTCTGGCCTGTTTCCCATCTATGGCATC
s HiC_scaffold_1 225453186 72 + 233722169 GCCATGGTCAAAAAGCTCCCCTAGCGGGGTGCTAGAATTGGTCCTCCGGGCTTGCTTTCCATCCACGCCATC

a score=10591
s chr3           106821598 803 + 160039680 TTTTCATGTCATATGAGAAAGTCTGACTTCTTACTCAAGCAT-TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGA---GAAACCTTTGCGTAAATATTGGG----------AAGAGTTGGCTGAG-----GGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGG---GACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCA--------GAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAA---TTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAG---GTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAG
s HiC_scaffold_1 168341690 819 + 233722169 tttttatatttcatcagAAAATT---CTCTCCTCCCCAGCATATTCTTAACAGCAGACTTTACATCCTTGTTCCTCAGACTATAGATGAGAGGATTGAGCAAGGGAGTCATCACCCCATAGAAGAGGGAAATGAGAGCCTGCAGGATGTCTTGATTATCATCCTCAACAGTGATTTTAGACTTGGGCTTTGCATACATGAAGAAGAGGGTCCCATAGAATATAATCACCACCGTGAGGTGGGCTGAGCAGGTGGAGAAGGCCTTACGTTTTCCTTCAGTGGAAGGAATTCTCATGATAGTAACAACAATACataaataagaaatggaaattacTAGCAGGGGAATAACTAGAGCAATCAGGTTTGATGCTGCCATG---CTGATTACATTGATTGAAATATCAGCACAGGCCAGCTTCAGGATAGCCAGAATTTCACAGACAAAATGGTGAATGACATTATTGTTACAGAACGGTAAT-TGCATTGCAAGA-------GATGTCTGTATCACTGAGTCAACAAGCCCAATGACCCAAGGTACAGCTGCCATGGGAACATAGACATCTTTGGTCATGATGCCAGAGTATCTCAGTGGAtagcagatggccacatagcggtcaagTGCCATCATGCCTAAAAGGACACATTCTGTGGCACCTGTGG---CAAAGGACAGGAACATTTGTGACATACACCCAGAGAAGGAAACTTTCTTCTTTGCTCTCAAAAAGGTGTCAAGAATTAGTGGGACAG---AAGAGCTTGTATAACAAATGTCCAGGATGGAAAGATTGCAGATGAAGACGTACATGGGGGTGTGCAGATGAAAGTCGTAGAG

a score=11248
s chr3           106821598 841 + 160039680 TTTTCATGTCATATGAGAAAGTCTGACTTCTTACTCAAGCAT-TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA----AACCT------------------TTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTA-------GGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAA-GACCCAATAGCCA---ACCTAAAGCAGAGAGAA----CCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAA---TTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAA---TGTTAGAG------GTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTA
s HiC_scaffold_1 168291324 859 + 233722169 TTTTCATATTTCATCAGAAAATT---CTCTCCTCCCCAGCATATTCTTAATAGCAGACTTTACATCCTTGTTCCTCAGACTATAGATGAGAGGATTGAGCAAGGGGATCACCACTCCATAAAAGAGGGAAATGAGAGCCTGCAGGATGTCTTGATTATCTGCCTCAGCAGTGGT----TTTAGACTTGGGCTTTGCATACTTGAAGAAGAGGGTCCCATAGAATATAATCACCACCGTGAGGTGGGCTGAGCAGGTGGAGGAGGCCTTACGTTTTCCTTCAGTGGAAGGAATTCTTATGATGGTAACAACAATACATAAATAAGAAATGGGAAATTATTAGCAGGGGGAAT--AACTAGAGCAATCAGGTTTGATGCTGCCATG---CTGATTACATTGATTGAAATATCAGCACAGGCCAGCTTCAGGACAGCCAGAATTTCACAGGCAAGGTGGTGAATGACATTATTGCTACAGAA-TGATAATTGCATTGCAAGA-------GATGTCTGTATCACTGAGTCAACAAGCCCAATGACCCAAGGTACAGCTGCCATGGGCACATAGACATCTTTGGTCATGATGCCAGAGTATCTCAGTGGAaagcagatggccacatagcggtcaagTGCCATCATGCCTAAAAGCACACACTCTGTGACACCTGTGG---CAAAGGAAAGGAACATTTGTACCATACACCCAGAGAATGAAACTTTCTTCT---------TTGCTCTCAGAAATGTTTCAAGGACTAGTGGGACAGAGGAGCTTGTATAACAAATGTCCAGGATGGAAAGATTGCAGAGGAAGACATACATGGGGGTGTGCAGATGAAAGTCATAGAGGATCACTGAGATGAGTACTCCGTTTCCAAGCAGGATCA

a score=11196
s chr3           106821603 834 + 160039680 ATGTCATATGAGAAAGTCT--GACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGG---CTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTC---ATTAGGGCC-----ACAGAAGTTTTGTCTACACAGCAGG-------------ACCATGGTGATGGCTGTGAGGA----AGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGA-GCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGT
s HiC_scaffold_1 180672290 836 + 233722169 ATGACATATCACAGAACCAAAGACACCCTTTTGAAGAACTTCTTTAGCgcttctttcatttctctgttcCTCAGACTGTAAATAAAGGGGTTAGTTATTTGGGGGACCACAGAATACATCACGGA--AGCCATAGCA-GTTTTTCTGGAGGAGTCAGTAACTGCAGAACTAACGTAGACACCCAGTCCTGTCCCATAGAACAAAAAGACAATTGTTAGGTGAGATCCACAGGTTGAAAAGGCTTTATACCTTGCTTTGCCTGATGGAATCCTCAAAACGGATGAGATTATTTGAGCATAAGAGAAAATGATTCCGGATAAAGGAACACCACCAAATATGAAAGCTGCCACATATGTGAGGATGTTATTGATGAGGGTGTCAGAACAGGCAAGTTTGATGATTTGAGCAAGTTCACAGAAGAAGAGGGGGACTTCCAGATCTGTGCAAAAGGACAGATGCAGCACCATCAGAACAAGAAGGAGGGCATTCACAGTACTAATGG--GTAAGGAAAGTAGAACCAGCAGAGC-----------------------ACAGAGGCGGGGATTCATGATGACTGTATATTTCAAGGGGTGACAAATGGCCACGTAGCGATCATAAGCCATTGCTGCAAGAAGACAATTCTCCAAAccagcaaagaacaaaacaaaacaagcctgaGTAAGGCATCCTGAATATGTGATGCTCTGGTCCTGTGCTTGGATGTTCACCAGCATCTTTGGAATTGTTGTTGTGCTTAAACAGATATCAGTGAAAGACAGGTTAGAGagaaagaagtacatgggggtttGAAGGTGGGTGGTAGAGCTG-ATGGCCAGAATGATGAGCAGGTTCCCCAGGATGGT

a score=14422
s chr3           106821603 915 + 160039680 ATGTCATATGAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA----AACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGAT---CAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAA-GACCCAATA-------GCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCA--ACCAACCACTGA--GATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGC---ACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTC
s HiC_scaffold_1 182286895 915 + 233722169 atatcatttgGAAGAACAAGATACTTTATTCAATAGTTTTCCGAAGGCccctttcatgtctttatttctcAGGCTATAAATGAAGGGATTCAACATGGGAATGATCACAGTGTACAGCACTGAAGCAATGATCTCATTGTCTTTGTTGCtga----tggagggaggaagaaagtAGAGACCAATAATTGCTCCATAATAGAGAATCACCACTGAGAGATGGGATCCACACGTGGATAAGGCTTTGCAGATGCTCTTTTTGGAGGGAACCTGGAGGACCGTGACCCCAATACGACCATAAGAAAATAGAATATACAGGAATGGAAGCATAATGGCTGTCACACCTGCAGTAAAGATCACCAATTGGTTGAGGGAGGTGTCTGAGCAGGACAACCTGAGCAGGGCACCAAGGTCACAGAAGAAGTGAGGGACAATATTTTTAA---CACAGAAGGAAAGCCGACCCAGGAGGAGAGTG--------TGTAAAAGAGCACAAGCACAAGCAATGACCCAAGACATGGCTACCAGCTTGACACGAAGGCTCTGCCTCATAATGGTGGTATAATGTAGAGGGTGACAGATGGCCACATATCTGTCATAGGCCATTGAAGTGATAAGAAAACTGTCCAAGTCagcaaagaatatgaaaaaatatgctTGTGAAATGCATTCCTCATAGGTGATGGACAGGTCCTGGGTCCAC----ATGTTCATCAGCATTTTTGGAACAGTGACAGATGAGAAAGAGACATCCGTGAAGGCCAAGTGGccgaggaagaagtacatgggggtgtggag---gCGGGAGTCCAGCCTGATGAGCAGGATGATGAGTAGGTTCCCCAGCACTGTGGTCAGGTACATGACAAGGAACAGGGTGAAGAATGCAGCCTGCTGCTCTGGCCGGATGGGGAGCCCCAGGAGGAGGAACTC

a score=13500
s chr3           106821612 859 + 160039680 GAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGC---ACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAA-GGCAACGGTC-TCAATCAGTGAA-----GTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTT-----------------TGTCTACACA---GCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAA---GCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAA---------GAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCT---TCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGT---TGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTA---------GAAGATGCAAAACATTATAAAGAGG
s HiC_scaffold_1 182364651 863 + 233722169 GAGAATGTTTTACCACT-GCTGAAAAGTTTACCCAAAGCATCCTTCATGTCTTTATTCCTCAAGCTATAGATGAATGGGTTTAGCATAGGAATAATCACATTATAGAG---AATGGAAGCCCGACTTTCTTTCTCTGTAGAGTGAGCTGAGGGGGGGAGTAGATACACACCCATAAGTGACCCATAAAAGAGAAGAACCACCGTGAGATGAGAACCACAGGTAGAGAAAGCCTTCCACCGCCCTCCAGGAGAGGAGATGCCAAACACAGTCCAGAAAATACGGACATAGGAGAAGACAATCAGCATGAGGGG---CAGAGTGA----GGAAGATCAAGCCCATGATGATGATCATCAGCTCGTTAATGTGGGTGTCGGAGCAAGCAAGCTTCAGTAGAGCTCTGGGGTCACAGTAGAAGTGGTGGATTACAATGTAGCCACAGAAAGTCACACGAGTTAGCAACAGTGTGTGCACAAGGGCAGGACAATTG--------GTTAGCAACAAACAG---------------ATAACTAACATTAGTACACAGAGTTGAGGACTCATGGCTGTGTTATAATGAAGTGGCCGGCAGATAGCCACAAAACGGTCATATGCCATCACAGC---CAGGAGGCA----GTTGT--CAAGACCACCAAACAAAAGTAGGAAATATAACTGTGTAAGGCACCCAGGGTAGGAGATGGTCTGACTCTGGGTATGAATGTTGACCAGCA---TTCTGGGGATTGAAGCTGAACTGAAGCAGGCATCTGTTAATGATAGATTGGCCAGAAAGAAGTACATGGGCGTATGGAGGTGTGGGTCAGTGCAGATGGCCAGGAA---GATGAGCAGGTTTCCAGCCATGGTGATCAGGTACATGCCCAGGAAGGTGCCAAACA----GAAGAGG

a score=15182
s chr3           106821625 898 + 160039680 TTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTG-CGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGT---------GAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCA------------GAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAG--AATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATA---ATAATCAGCAACATCTTGGGGACAATGTTA--GAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACT-AGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACTA
s HiC_scaffold_1 168220593 898 + 233722169 TTTCTGCTCATGATTTTCTTCACAGCTTCTTTCACCTCCttattcctcaggctgtagatgatGGGGTTCAACATTGGGGTTACTACTCCATAAGACAGTCCAATGATTTCATCAGATGCTTTGGTAAACTTTGACTTAGGCTTCATG-TACATAAAAAGGGCTGAACCATAAAATAAGATGACCACAGTCAGGTGGGCTGAACAGGTAGAAAaggctttctttttcccctcagAAGAATTAATTCTCAAGATGgaagagagaatgaaaatatagGACAC---------ACAAATTAACAGCAGAGGAATCACCAAAAAAACAATACTTGCCACTGTCATGATAAGTACATTTATGGAGATATCTGAACATACAAGTT---TAAGAAGAGCCAGGATCTCACAGGTAAGATGATCAATGACATTATTACCACAGAAA------------GGTAACACCATTGTCATTACTGTTTGCACTAAAGAGTTTAGACAGCCTGTGACCCAGGACCACACAGCCATGTGTACATATAACACCTTGTTCATGATGATGTGGTACTTCAGTGGGTTGCAGATGGCTGCATACCTGTCATAGGCCATCACAGCCAGCAGGACACACTCAGTAGAACCCA--AACTAAGGGAGATAACCATTTGTAGAGCACAGCCAATGAAGGAGATGGATTTTCTTTCAGACGTAAACATAATGAGCA-----TGGGAGGAATTGATGATGATGTGTAACAAATGTCCAAGAATGAGAGGTTTACAAGAAAGAAGTACATAGGAGTGTGGAG-GTGAGAATCCAAGATGCTGATGAAAATGAGGAGGCTGTTTCCTAAGAGAATTATCATGTACATGATGAGACAGACCACAAACAGAAAAAACTGGAGTTCTGGGTATTTAGAAAGCCCCGTCAGAAAGAATTCAGCTA

a score=13987
s chr3           106821640 882 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA--AACCTTTGCGTAAA--------TATT--------GGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAAC---------GGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTT-----------------TGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAA----TTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG----------AGCATGGTTGCACAGCACTAGAAAAACAATAAGGA---TGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACT
s HiC_scaffold_1 177337478 900 + 233722169 TTCCTCACGGCAGCCTTCACATCTttattcctcaggctgtagatgatGGGGTTCAGCATGGGGGTCACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCCTCAGGATGGTGGTGAGGATGAAGACATAGGA------GACAAAGATGAACAGGACCGG---GATTGCCAGGAAGATCATGTTAGCCACCACCATACTGATCACGTTGACGGAGATGTCAGCACAGGCCAATT---TCAGGACAGCCAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAGGGCAGCCTCATTGCCTGAAATGTCTGTACTACAGAGT--TGATGATGCC-----------AGCTGC----CCAGGAGCCAGCAGCCATGGGCACATAAACAGCCTTGCTCATGACCACAGGGTACCTGAGTGGgttgcagatggccacatagcgatcAAACGCCATCATGCCCAGGAGCACACACTCTGTGGCTCCCATGG---CAAAGGA-CAGAAACATCTGCCCAAAACAGGCTGAGAAGGAGATGGTTTTCCTGGGAGTGAGGAAGCTGTCAAGGATGAGGGGGACAGAGGAGGTCGTGTAGCAGACGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggcgtGTGCAGGTGGGAGTCAAGGATGGT-------CACCAG------GATGAGGACGCCGTTGCCCAGAAGGATCACCAGGTACATGGCCAGGATGAGCACGAAGAACGTTTTCTCCAGTTTTGGGTGAGCTGAGAGACCCAAGAGAACAAACTCTGCT

a score=8655
s chr3           106938768 579 + 160039680 GCATCTCTTTCTTGTATGTTTGACATAATCATGTGCTTGGTTCACTCTGGCCTCTAATTGAACAGGATCTACTGTTAATTTTGTCAGTAA-------TGGTGAGTGATTGGCCTAGAAACAGAATTAGAAATGACTAGGGACCACAAAGCACAAAAATCAATGATGGTTATTTCTCTCTCATCAGGCATGTCCCACT------TACCTGTGATCTTGAAGAA-----TAATTGCTAGATGTCAGAAGCTGTGAAGTCACTGAAGGCAAGGA----AACAAAAACAGTTTCAAGAAGAGCCCATATTGTATGTGGAATAACTTCTGGTGACCTGAGTTGAA---------GATCAGGCACTGAG---------CTACATCAGCACTGAGACCATCAATGACAATGGCAGA----GTTTGCTTTCAATGTTGAGA-GAAAGGGTGGGCCTGACGTC--------------TGCAA--TCTGGAGGTTTAAGTAA----------TTCTGGACTCATTATTTAT----------------TCTGTGAGT--TGATGTGAAAACAGCT-AAGAATTCTGGGACACTCTAGATAAGTTGCTTGTGAGAGTAGATTGCTTTCCCGAAG-AAATCTGTAGCATGCATGAGA-CTTCTCAATTAAGGAGCAGATGCCTG
s HiC_scaffold_1  83880101 634 + 233722169 GCATCATTTGCTCTGGTGCTCGATCTAATCTCATGTTTTGGTAACCATGATCCTTAA----ACAAAACCTACT-TTAATATCACCATTAAGATGCCATATTGAATGACTGGCTTAGAATCAAAATTAAAAGTGATTAAAGACCACAAAGGTAGAAAATCAGTGAGAGTTACTGCTCAGCAGTCAGGCATGTCCCTTTCTACCATGGCTATAATACTGAGGAAGAAAGTAATCCTTCAGTTAAAGAGGCAGT---TTCATTGGATGCAACAAGACTAGCAAAAA-----TCAGGAAGGACC--TATCAGGTCTGGAGAAACTTTAAATGAACTGGGTTGAGACTTGTAATGACCTGG-ACTGAAGTGTAATGTCTACACCA-CATT----------ATGGCCAAAGCAAAAAACATCTGTTTGCAATGCTGAAAGGAAAGGCTAACCCTGACTACAGTGCTGAATTTGTTGCTAGTTCTGGTGCCTTAAACAACTTACTAATCTTTTGTTATTATTACATATGGTAGTTCGTGGTCAGTATGTGGGTTCTGACATGAAGGCAGGTGAAGGATTTTTGGAAACTT----TAAGCTGATGATGAAACTAG------TTACTAAGGCAAATCTTCAACATAGATAAAAGCTCCATATTCTAGCAATAGATGACTG

a score=11360
s chr3           107037182 593 + 160039680 TGTGCATCATCTGGTTCTCCTTTGAGCTTCTGGTGCGGTTCTTTGCTTGCCCCAGTAAAGCCACCTTCTCCAGAAATATCATGAACTTGATAGACATTGTGGCCATCATTCCTTATTTTATCACTCTGGGCACTGAGCTGGCTGAACGACAAGGTAATGGGCAGCAGGCCATGTCG--CTGGCCATCCTGAGAGTCATCCGCCTAGTAAGGGTTTTCCGCATCTTCAAGCTCTCCCGCCATTCTAAGGGGCTGCAGATCCTAGGACAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATATTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGG----------CAGAC-----GACCC------------TTCTTCGGGTTTTAACAGTATCCCGGATGCCTTCTGGTGGGCAGTAGTAACCATGACAACTGTTGGTTATGGTGATATGCACCCAGTGACCATAGGAGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCAGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAACTACTTCTACCACCGGGAGACAGAAGGGGAAGAGCAAGCCCAG
s HiC_scaffold_1 115703160 611 + 233722169 tgtgtgtgctgtggttCACGCTGGAATTCCTGGTGCGCATTGTGTGTTGCCCAGACACTTTGGACTTTGTCAAGAATCTGCTCAACATCATTGACTTCGTGGCTATCCTACCCT------TCTACCTGGAGGTTG----GGTTGAGCGGCC-TGTCATCCAAGGCGGCCCGTGACGTGCTAGGCTTCTTGCGCGTGGTGCGCTTTGTGCGTATCCTGCGAATCTTCAAGCTCACGCGCCACTTCGTGGGGCTCCGGGTCCTGGGTCACACCCTGCGTGCCAGCACCAATGAGTTTCTGCTGCTCATCATCTTCCTGGCCCTAGGTGTGCTCATCTTTGCCACCATGATCTATTATGCTGAGCGTATTGGTGCCAGGCCTTCCGACCCACGGGGCAATGATCACACCGACTTCAAGAATATCCCCATCGGCTTTTGGTGGGCTGTGGTCACCATGACAACGCTTGGGTATGGGGACATGTGCCCCAAGACATGGTCAGGCATGCTAGTGGGAGCACTGTGTGCCTTGGCCGGCGTGCTCACCATCGCCATGCCTGTGCCAGTCATTGTCAACAACTTCGGCATGTACTACTCCCTGGCCATGGCCAAGCAGAAGCTACCCAAG

a score=9940
s chr3           107104592 770 + 160039680 GATTATAGCCATTGTATCTGTGATGGTCATTCTGATCTCCATCGTCAGCTTCTGTCTGGAAACC---------TTGCCCATCTTCCGGGATGAGAATGAGGACATGCATGGTGGCGGGGTGACCTTCCACACCTATTCCAACAGCACCATCGGGTACCAGCAGTCCACCTCCTTC-----------ACCGACCCTTTCTTCATT---GTAGAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGT--CCCAGCAAAGCTGG-CTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCTTACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCTCAAAGCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTGTCTATTTTGCAGAA---GCTGATGAGAGAGATTCCCAG------------------------TTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCAACTACCATTGGGGGGAAGATAGTGGGTTCTCTGTGTGCAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCACCGGG
s HiC_scaffold_1 115702978 767 + 233722169 GGTAGTAGCCTTTGCCTCTCTCTTCTTCATCCTGGTTTCCATCACCACTTTCTGCCTGGAGACCCATGAGGCTTTCAACATTGACCGAAATGTGACAGAG---ATTCACCGAGTGGGG---------------------AACATCACCAGCGTG-----------CGCTTCCGGCGGGAGGTGGAGACAGAGCCCATTTTGACTTACattgagggtgtgtgtgtgctgtggttCACGCTGGAATTCCTGGTGCG---CATTGTGTGTTGCCCAGACACTTTGGACTTTGTCAAGAATCTGCTCAACATCATTGACTTCGTGGCTATCCTACCCTTCT------ACCTGGAGGTTGGGTT----GAGCGGCCTG-------TCATCCAAGGCGGCCCGTGACGT-GCTAGGCTTCTTGCGCGTGGTGCGCTTTGTGCGTATCCTGCGAATCTTCAAGCTCACGCGCCACTTCGTGGGGCTCCGGGTCCTGGGTCACACCCTGCGTGCCAGCACCAATGAGTTTCTGCTGCTCATCATCTTCCTGGCCCTAGGTGTGCTCATCTTTGCCACCATGATCTATTATGCTGAGCGTATTGGTGCCAGGCCTTCCGACCCACGGGGCAATGATCACACCGACTTCAAGAATATCCCCATCGGCTTTTGGTGGGCTGTGGTCACCATGACAACGCTTGGGTATGGGGACATGTGCCCCAAGACATGGTCAGGCATGCTAGTGGGAGCACTGTGTGCCTTGGCCGGCGTGCTCACCATCGCCATGCCTGTGCCAGTCATTGTCAACAACTTCGGCATGTACTACTCCCTGG

a score=5656
s chr3           107104760 462 + 160039680 CGACCCTTTCTTCATT---------GTAGAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTG----GCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCT------------------------TACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAG-----------GCCAGCAGGCCATGTCA------CTGGCCA--TTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGAC----CCTCAAAGCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTGTCTATTTTGCAGAAGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGT---CTCCATGAC
s HiC_scaffold_1  64136890 510 + 233722169 CGACCCTCGGTCCATTCTGGAGCACGTGGAGACGCTGTGCGTGGCTTTCTTCACGCTGGAGTTCCTGCTGCGCCTCATCTCC----ACACCAGACCTGCGACGCTTCGCGCGCAGTGCCCTCAACCTGGTGGACCTCGTAGCCATCCTGCCGCTctacctgcagctgctgctcGAGTGCTTCACCAGCGAGGAG-------CAGCGGGACAGCAAGGGCTCGTCACGCGAGCACGACCTGGAGACGGTGGGTCGCGTGGGCAAGGTGGGCCAGGTGCTGCGCATCATGCGCCTGCTACGTATCTTCCGCATCCTCAAGCTGGCGCGCCACTCCACCGGGCTGCGCGCCTTCGGCTTCACGTTGCGCCAGTGCTACCAGCAGG----TGGGCTGCCTGATGCTCTTCATCACCATGGGCATCTTTGCCTTCTCCGCCGCTGTCTACTCCGTGGAGCATGATGTGCCCGGCACCAACTTCACCAGCATCCTCCACGCCTGGTGGTGGGCGGCAGTGAGTACCATGAC

a score=8243
s chr3           107104779 476 + 160039680 GAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCTTACTTTATCACC---CTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCTCAAA----GCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGT---CATCCTCTTCTCTAGTGCT--------GTCTATTTTGCAGAAGCTGATGAGAGAGATTCCCAG-------TTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCAACTAC
s HiC_scaffold_1 206873629 476 + 233722169 GAAGCTATCTGCATAGGTTGGTTCACTGCGGAGTGCATTGTGAGGTTCATCGTCTCCAAAAACAAGTGTGAGTTTGTCAAGAGACCCCTGAACATCATTGATTTATTGGCAATCACGCCATATTACATCTCCGTGCTAATGACAGTGTTTACGGGT------GAGAACTCCCAACTG---CAGAGGGCCGGA------GTCACCTTGAGGGTGCTCAGGATGATGAGGATTTTTTGGGTGATTAAGCTTGCCCGTCACTTCATTGGTCTTCAGACACTCGGTTTGACTCTCAAGCGATGTTACCGAGAGATGGTT----------ATGTTACTCGTCTTCATTTGTGTTGCCATGGCAATCTTTAGTGCACTTTCTCAGCTTCTTGAACATGGGTTGGACCTGGAAACATCCAACAAGGACTTCGCCAGCATCCCCGCTGCCTGCTGGTGGGTGATTATCTCTATGACTACAGTTGGCTATGGAGATATGTATCCTATCAC

a score=13643
s chr3           107194699 791 + 160039680 CGAGGAGTGGCTGTGGTCTCGGTTTTGGTTGTAGTCATCTCCATCACCATCTTCTGCCTGGAGACACTCCCAGAGTTCCGAGAGGACAGGGAGCTGAAGGTGGTCAGAGACCCCAGCATC--------AATACAAACAAAACAGGCCTCTCCCAGACCATGTTCACTGATCCTTTCTTCA-------TGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTTGTGGTCTGCCCCAGCAAGACTGACTTCTTCAAGAACATCATGAATATTATTGACATCATCTCCATCATCCCCTACTTTGCAACCCTCATAACAGAGCTAGTACAGGAGACCGAGCCAAGTGCCC----------AGCAGAACATGTCC--CTGGCCATCCTGAGGATCATTCGTCTGGTGAGGGTCTTCCGCATCTTCAAGCTTTCTCGACACTCTAAAGGGCTGCAGATCCTGGGGCAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAG-GTGGATGAGCCAG--------------------------AGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCTGTGGTCACCATGACAACTGTAGGCTACGGTGACATGTGCCCAACCACCCCAGGAGGAAAGATTGTGGGTACTCTGTGCGCCATTGCTGGTGTCCTCACCATCGCCCTCCCTGTGCCTGTCATTGTCTCCAATTTCAACTACTTCTACCACCGTGAGACTGAGAACGAGGAGAAGCCAAACATCCCAGGAGA
s HiC_scaffold_1 115702976 798 + 233722169 CAGGTAGTAGCCTTTGCCTCTCTCTTCTTCATCCTGGTTTCCATCACCACTTTCTGCCTGGAGACCCATGAGGCTTTC------AACATTGACCGAAATGTGA-CAGAGATTC----ACCGAGTGGGGAACATCACCAGCGTGCGCTTCCGGCGGGAGGTGGAGACAGAGCCCATTTTGACTTACattgagggtgtgtgtgtgc----tgtggttCACGCTGGAATTCCTGGTGCGCATTGTGTGTTGCCCAGACACTTTGGACTTTGTCAAGAATCTGCTCAACATCATTGACTTCGTGGCTATCCTACCCTTCT-----ACCT-------------------GGAGGTTGGGTTGAGCGGCCTGTCATCCAAGGCGGCCCGTGACGTGCTAGGCTTCTTGCGCGTGGTGCGCTTTGTGCGTATCCTGCGAATCTTCAAGCTCACGCGCCACTTCGTGGGGCTCCGGGTCCTGGGTCACACCCTGCGTGCCAGCACCAATGAGTTTCTGCTGCTCATCATCTTCCTGGCCCTAGGTGTGCTCATCTTTGCCACCATGATCTATTATGCTGAGCGTATTGGTGCCAGGCCTTCCGACCCACGGGGCAATGATCACACCGACTTCAAGAATATCCCCATCGGCTTTTGGTGGGCTGTGGTCACCATGACAACGCTTGGGTATGGGGACATGTGCCCCAAGACATGGTCAGGCATGCTAGTGGGAGCACTGTGTGCCTTGGCCGGCGTGCTCACCATCGCCATGCCTGTGCCAGTCATTGTCAACAACTTCGGCATGTACTACTCCCT---GGCCATGGCCAAGCAGAAGCTA-----CCCAAGAAA

a score=12494
s chr3           107342916 755 + 160039680 CAGCCAGTTCGTCCGCCGGTCTGTCCATCCTCGCAGTCATGG------AGAGAGCCAGTCTGATCCAGAAGGCCAAGTAGGCGGAACAGGCTGAACGCTATGTGGACATGGCAGCTTTCATGAAGAGCGCCGTAGAAAAGGGCGAGGAGCTCTCCTGCGAGGAGCGGAACCTGCTCTCCGTGGCCTACAAGAATGTG--TATGGGCGGCCAGAGAGCGGCCTGGAGGGTCCTGTCCAGCATCGAGCAGAAGAG---------CAACGAGGAGGGGTCAGAAGAGAAGGGCCCCGAGGTAAAAGAGTACCGGGAGAAAGTAGAGACCGAGCTCAGGTGTGTGCGACACCGTGCTCGGCCTGCTGGATTCACACCTCATCAAAGGGGCTGGAGATGCAGAGAGCCGCATCTTCTACCTGAAGATGAAGGGTGACTACTACCGCTACCTAGCCGAGGTGGCCACTGGCGATGAGAAGAAGAGCATCATCGATTCTGCCCGGTCAGCCTACCAGGAGGCCATGGACATCAGCAAGAAG-GAGATGCCGCCCACTAACCCCATCCGCCTGGGCCTGGCCCTGAACTTTTCAGTCTTCCACTAAGAGATAGCCAACAG-CCCCGAGGAGGCCAT-CTCGCTGGCCAAGACCACCTTCGACCTTCGACGAGGCCGTGGCCGACCTGCACACCCT-CAGTGAGGACTCCTACAAGGACAGCACCCTCATCATGCAGTTTCTGAGAGACAACCTAACGCTGTGGACAGCTGACAGTGCTGGGGAA
s HiC_scaffold_1   6311715 709 + 233722169 CAGCTGGCCTCACTATCGGCCTCCAGGTCCCCACAGTCACCAGTGCCAAGGAAACTGAGCTGATCCAGAAGGCCAAGCTGGTCAATCAGGCCAAGTgctgtgaaggtatggtcaatcACAGGAAGGCAGTGACAAGGCAGGCTGCCAAGCTGTCCAATGGGGAGTGTAGCCTGCCCTTTATGGCCTACAGAAATTTGGTCATGGGCTGCTGGTAAGC---CTGGAGAGTCATATCTAGCATTGAGTGGAAAACTGACACCTCCAACAAGAAGCTGTCAATTAAGGAGTACCCCA-------------------------------------------TCTGCATTACTGCCATGGAATTGTTGGACAACTATTTAATGGACAATGTAACTACTTCAGAGAGTAAATTCTTCTAtctgaaaaggaagagagattacTTGCAAGACCTTGCTGATGTTGCATATGGTGATAAta-gaaaaaagttaataattc--CCAAGGAACTTTACAAAGAAGCATTAAATAT--GCAAGAAAAGGGATGCAACCCACACATCAATCTTGCCTGGGTTTGTCCTTGGCATTCT---GCATTTACTATGAGATCCTTAATAAACCCCAAACTTGCCATGCACCCTGACTAAAAAT-------------GGCAGAACTATTTCAGAGCTTCATATACTGTAAGGAACACTCCTACAAAAACAGCACTCGCATCATGCAGCTGCTCAGAGACAACTTAATATTAGGGAATTAAGACAGTGCAGGAGAA

a score=3889
s chr3           107429394 80 + 160039680 AGCTTAATTC--AGTGCTGGGGGTTGAACTCCAGGCCTTTTGAATGCTACATAAGCTCTCTACCATTGAACTACAGCCTAAC
s HiC_scaffold_1 205014931 82 + 233722169 AGCTTTGTTCGCAATGCTGGGGACTGAATTCTGGGCTTTCTATATGCTACACGAATTCTCTACCATTGACTTACTACCCGGC

a score=11821
s chr3           107447656 601 + 160039680 GCTTCTGCTTGGCCATAG---CCAGGGAGTAGTACATACCAAAGTTATTGACGATGACAGGCACGGGCATGGCAATGGTCAGCACACCAGCCAGCGCACACAGCGCACCCACCAACATTCCTGACCACGTCTTGGGATACATGTCCCCATAGCCAAGCGTTGTCATGGTGACCACAGCCCACCAGAAACCGATGGGGATGTTCTTGAAGTCGGTGTGGTCGTTGCCCCGTGGGTCAGATGGCCTGGCCCCAATTCGCTCGGCATAATAGATCATGGTGGCGAAGATGAGCACACCCAGGGCCAAGAAGATGATAAGCAACAGGAACTCATTAGTGCTGGCCCGGAGAGTGTGGCCTAGCACACGCAGCCCCACAAAGTGGCGTGTGAGCTTGAAGATCCGCAGGATGCGTACAAAGCGTACCACACGCAGGAAACCCA-GCACATCGCGAGCTGCCTTGGAAGACAAACCACTCAATCCCACCTCCAG----------------------GTAAA--AGGGTAAGATGGCCACAAAGTCGATGATGTTGAGCAAGTTCTTGACAAAGTCCAGCGTATCAGGGCAGCACACAATGCGAACCAGGAACTCTAGAGTGAACCACATCACGCA
s HiC_scaffold_1 115942136 589 + 233722169 gcttctcctcattctcagtttcTCGGTGGTAGAAGTAATTGAAGTTGGAGACAATAACTGGCACAGGTAGGGCAATGGTGAGGACCCCTGCAATGGCACACAGAGTGCCCACAATCTTCCCCCCTGGGGTGGTTGGGCACATGTCACCATAGCCTACAGTTGTCATGGTGACCACTGCCCACCAGAAGCCATCAGGAATGCTAGAGAAAT--------------------------GAGACTCTGG-CTCATCTACCTCAGCAAAGTAGACTGCACTGGAGAAGAGGATGACTCCAATGAAGAGGACGAAGATGAGCAGCCCCAACTCTCTCATAGAAGCCTTCAGTGTTTGCCCCAGGATCTGTAGCCCCTTCGAGTGGCGGGAAAGTTTGAAGATGCGGAAGACCCTCACTAGCCGAATGATCCTCAGGATGGCCAGGGACATGTTCTGCTG-------AGA------ACTTGGTTCTGTCTCCTGAACCAGTTCTGTGATGAGAGTTGCAAAGTAGGGAATGATGGAGATAATGTCAATTATGTTCATGATGTTCCTGAAGAAGTCCGTCTTGCTGGGGCACACTACGAACCGGAGCACCAGCTCAAAGGTGAACCACACGATGCA

a score=10925
s chr3           107447674 760 + 160039680 CCAGGGAGTAGTACATACCAAAGTTATTGACGATGACAGGCACGGGCATGGCAATGGTCAGCACACCAGCCAGCGCACACAGCGCACCCACCAACATTCCTGACCAC----GTCTTGGGATACATGTCCCCATAGCCAAGCGTTGTCATGGTGACCACAGCCCACCAGAAACCGATGGGGATGTTCTTGAAGTC---GGTGTGGTCGTTGCCCCGTGGGTCAGATGGCCTGGCCCCAATTCGCTCGGCATAATAGATCATGGTGGCGAAGATGAGCACACCCAGGGCCAAGAAGATGATAAGCAACAGGAACTCATTAGTGCTGGCCCGGAGAGTGTGGCCTAGCACACGCAGCCCCACAAAGTGGCGTGTGAGCTTGAAGATCCGCAGGATGCGTACAAAGCGTACCACACGCAGGAAACCCA-GCACATCGCGAGC-------TGCCTTGGAAGACAAACCACTCAATCCCACCTCCAGGTAAAAGGGTAAG-----ATGGCCACAAAGTCGATGATGTTGA-GCAAGTTCTTGACAAAGTCCAGC-GTATCAGGGCAGCACACAATGCGAACCAGGAACTCTAGAGTGAACCACATCACGCACACACCCTCGATGTAGGTAAGAATGGGCTCT-----GTTTCTACCTCCCGCCGGAAGC----GCACGCTGGTGATATTCCCTACCCGATGA-ATC----------------------TCCGTCACGTTTCGGTCAATGTTGAAGGCCTCATGGGTCTCCAGGCAGAAGGTGGTAATGGAGACCAAGATGAAGAAGAGAGAGGCAAAGGC
s HiC_scaffold_1 116118877 760 + 233722169 CCCGGTGGTAGAAGTAATTGAAGTTGGAAACAATCACAGGAACTGGCAATGCAATGGTCAAGACACCCGCGATGGCACAAAGAGAGCCCACAA----TCTTGCCCCCAATGGTCACTGGGTGCATATCACCATAACCAACTGTTGTCATGGTGACCACTGCCCACCAAAAGGCATCTGGGATACTGCTAAAACCCGAAGTGGGGTCAT--------------------CTGCCTCC----------GCAAAGTAGACCGCGCTGGAGAAAAGGATAACcccaataaagaggaaaaagatgagCAAGCCCAACTCTCGCATGGAAGCCTTCAATGTCTGCCCCAAGATCTGCAGCCCTTTGGAGTGACGGGAGAGCTTGAAAATGCGGAAGACCCTCACCAGACGGATGACCCTGAGGATGGCCAGGGACATGGCCTGCTGTCCGTTGCCCTGTCGCTCAGCCAGCTCGGTGCC----CAGAGTAATAAAATAAGGAATAATGGCCACAATATCTATTAAGTTCATGATATTTCTTGAGAAGGT--GGCTTTGCTGGGGCAAGCGAAAAAACGCACCAGCAGCTCAAAAGAGAACCAGATGATGCACAGGGTCTCCAC---TACGAAAAAGGGATCTGAGAAGCTGGAGGCTCCCCCGGGGGGCCCCGACGTGCTGTTGCTGG--CTGACTCGAAGGCATCCTGCGATGGCGAGGCTGGGTAGTCCTTCTCATCTCGG--AACTCGGGCAGC-------GTCTCTAGGCAGAAGATGACGATGGAGATGAGGATGACCAGCACGGACACGATGGC

a score=7314
s chr3           107447681 585 + 160039680 GTAGTACATACCAAAGTTATTGACGATGACAGGCACGGGCATGGCAATGGTCAGCACACCAGCCAGCGCACACAGCGCACCCACCAACA-------TTCCTGACCACGTCTTGGGATACATGTCCCCATAGCCAAGCGTTGTCATGGTGACCACAGCCCACCAGAAACCGATGGGGATGTTCTTGAAGTCGGTGTGGTCGTTGCCCCGTGGGTCAGATGGCCTGGCCCCAATTCGCTCGGCATAATAGATCATGGTGGCGAAGATGAGCACACCCAGGGCCAAGAAGATGATAAGCAACAGGAACTCATTAGTGCTGGCCCGGAGAGTGTGGCCTAGCACACGCAGCCCCACAAAGTGGCGTGTGAGCTTGAAGATCCGCAGGATGCGTACAAAGCGTACCACACGCAGGA-------AACCCAGCACA---TCGCGAGCTGCCTTGGAAGACAAACCACTCAAT-CCCACCTCCAG------GTAAAAGGGTAAGATGGCCACAAAGTCGATGATGTTGAGCAAGTTCTTGACAAAGTCCAGCGTATCAGG--GCAGCACACAATGCGAACCAGGAACTCTAGAGTGAACCACATCACGCACACACCCTC
s HiC_scaffold_1 232815759 564 + 233722169 GTAGTACTTGGAAAACTTGTTAAAGATGATGGTGATCGGAAGAGCCACCACCAGGATGCCA-------CAGATAATGCAGGTGCTGGCGATGACCTTCCCTGCCAAGGTGATGGGGTGGGTGTCTCCATAGCCCACAGTCGTCATGCTGATGGTGGCCCACCACCAGCAGATGGGGATGCTGGTGAGGCTGG-----------------ATGCCAGCTCGTCCTTCTCCA----------CAGAGTAGATCAGCACGGAGAAGATGGAGATGCCGACAGaaaggaaaagcagcagcagcccGACCTCATGGTAGCTGTGCCTCAGTGTGGCCCCAAGAGACCGAAGTCCCACTGAGTGCCGGGCAAGCTT---------CAGGATGCGGAAAATCCGCATGAGCCGGAGGATCTGAACCACCTTGCCCATGTTCTCGA--TGTCCTCGCTCTCCTCCTCCTTGGTGTCCACCGCCAACGTGGCGTAGAAGGGAATGATGGAGACAAAGTCGATGATGTTCAAGGGATTCTT-CCAGAACCTCTTCTGACAGGGAGCGGCA-GCCAGACGGATGGCGAGCTCCCCCGAGAACCAGGCAATGCACGCGACTTC

a score=11650
s chr3           107447694 755 + 160039680 AAGTTATTGACGATGACAGGCACGGGCATGGCAATGGTCAGCACACCAGCCAGCGCACACAGCGCACCCACCAACATTCCTGACCACGTCTTGGGATACATGTCCCCATAGCCAAGCGTTGTCATGGTGACCACAGCCCACCAGAAACCGATGGGGATGTTCTTGAAGTCGGTGTGGTCGTTGCCCCGTGGGTCAGATGGCCTGGCCCCAATTCGCTCGGCATAATAGATCATGGTGGCGAAGATGAGCACACCCAGGGCCAAGAAGATGATAAGCAACAGGAACTCATTAGTGCTGGCCCGGAGAGTGTGGCCTAGCACACGCAGCCCCACAAAGTGGCGTGTGAGCTTGAAGATCCGCAGGATGCGTACAAAGCGTACCACACGCAGGAAACCCAGC-ACATCGCGAGCT-GCCTTGGAAGACAAAC----------CACTCAATCCCACCTCCAGG----TAAA--AGGGTAAGATGGCCACAAAGTCGATGATGTTGAGCAAGTTCTTGACAAAGTCCAGCGTATCAGGGCA-GCACACAATGCGAACCAGGAACTCTAGAGTGAACCACATCACGCACACACCCTCGATGTAGGTAAGAATGGGCTCTGTTTCTACCTCCCGCCGGAAGCGCAC-GCTGGTGATATTCCCTACCCGATGAATCTCCGTCACGTTTCGGTCAATGTTGAAGGCCTC-------------------------------------ATGG-----GTCTCCAGGCAGAAGGTGGTAATGGAGACCAAGATGAAGAAGAGAGAGGCAAAGGCTACCACCT--GTAGGCC
s HiC_scaffold_1 116054068 760 + 233722169 AAATTAGACACTATGACAGGGACTGGTAAGGCAATGGTTAATACACCTGCAATTGCACACAGGGAACCCACTATCTTTCCCCCAATGGTGGTTGGCACCATGTCTCCATAGCCTACAGTTGTCATGGAAACGACTGCCCACCAGAAGGCATCTGGGATGCTGGGGAACTGGGAAT---------CTCGCTCATCGGCT------------------TCTGCAAAATAGACAGCACTAGAGAAAAGGATGACCCCAATGAAAAGGAAGAATATCAGGAGGCCCAATTCTCTCATGCTGGCTTTGAGGGTCTGACCTAGAATCTGGAGACCTTTGGAATGTCTGGACAACTTGAAAATCCTAAAGACTCTTACCAACCGGATGACACGAAGGATGGCCAGTGACATTGCCTGCTGGCCTTGCTGGGCGTCCTCTGGCTTCTCAGCCAACTCTGTTCCCAGGGTGATGAAGTAGGGGATAATGGCCACAATGTCAATGATGTTCATGATGTTGGTGAAGAAGCCTGCTTTGCTGGGACAGGCAAAGAAT-CTCACCAAAAACTCAAAAGAGAACCAGATGATGCAGAGAGTCTC--TACAATGAAGAAAGGG-TCAGT-----------GAAGGAAGTGGACTGCTGG----------TACCCCATGGTGCT-------GTTGGAGTAGGTATGGAAGGTCACCCCACTACCATGCATGTCTTCATTTTCATCCCGGAAGATGGGCAATGTTTCCAGACAGAAGCTGACAATTGAGATCAGAATCACCATGACAGATACAATGGCTATAATCCTGGCAGGCC

a score=6466
s chr3           107447736 521 + 160039680 ACACCAGCCAGCGCA-CACAGCGCACCCACCAACATTCCTGACCACGTCTTGGGATACATGTCCCCATAGCCAAGCGTTGTCATGGTGACCACAGCCCACCAGAAACCGATGGGGATGTTCTTGAAGTCGGTGTGGTCGTTGCCCCGTGGGTCAGATGGCCTGGCCCCAATTCGCTCGGCATAATAGATCATGGTGGCGAAGATGAGCACACCCAGGGCCAAGAAGATGATAAGCAACAGGAACTCATTAGTGCTGGCCCGGAGAGTGTGGCCTAGCACACGCAGCCCCACAAAGTGGCGTGTGAGCTTGAAGATCCGCAGGATGCGTACAAAGCGTACCACACGCAGGAAACCCAGCACATCGCGAGCTGCCTTGGAAGACAAACCACTCAAT----CCCACCTCCAGG------TAAAAGGGTAAGATGGCCACAAAGTCGATGATGTTGAGCAAGTTCTTGACAAAGT-CCAGCGTATCAGGGCAGCACACAATGCGAACCAGGAACTCTAGAGTGAACCACATCACGCA
s HiC_scaffold_1 117658983 475 + 233722169 ACACCACACAAAGCTTCACAGCCCACCCAGCCTCTACCCTGATGG-GTCCAGTAACAC-TGACT---TACCCCAGTGTGGTCATGGTGACAATGGTGTACCAGAAGGAGGCTGGGATGCTTGTGAACTTGCTGG------------------CAGAGGA----GCCCT-----TCTCGGCATAAAACATCACAGTGGCAAAGATGATGATGGCCATGGTGAGGGAGAAGAGCAGAAAGCCCAATTCAGAGGCACAACTCTTCAAGGTATAGCCCAGGATCCGCAGACCCTGGGAATGGCGAGAAAACTTGAAGATCCTGA--------------------ACACTCGGAAGACCCGGAGCGTGACAAAGGCCCC----AGACACATC-CTCATTGTTGGTCATGACCAGGCCGATATAATAGGGCATGATGGCCACCACATCAATGATGCTCATCACACTGCGGATGAAGCGGTAGCGGCTGGGTGCTGCAAAGAGC-CGAAGGAGGTATTCCACGGTGAAGATCATGACACA

a score=4818
s chr3           107458473 129 + 160039680 GATACCCCAGAAGGTGAGCTCTTCCTCAAAGAGAGGCCCACAGACGTCTGCGGGGCAATGCAGCTTGCCCGTACGGTAGTAGTTGAGCACATAGGCAAAAACACCCGGGTGCCGATCAAAGAAGAACTC
s HiC_scaffold_1 117659785 129 + 233722169 GATGCCATAGAAGGCCAGCTCATCATCATAGGCCGAGATGCACTCGTAGCGTGGGTAGTGCAGCTTCCCGGTTCGGTAAAAGTTGAGCACACAGCGGAATACTTCTGGGTCCCGGTCAAAGAAGTACTC

a score=7572
s chr3           107738721 258 + 160039680 CTCTTTTCTGTAGCACTAGGTTTCCCCTGAGCTCAGTCTG---CAGCACTGTGCT--CTGTGTTTCTCCCTTCAGCTCAGCAGCCTCTGTTCAGGCTACTTGCCACTTGAGGCAGAGTTCTTCCATAACTCCCAGTCTCTTTGCAGCAGCATCACCAAAAGATGTGCTGGGATGTT---CTTTGATTTCAGAGTTGGAGTCAGAACAGAAAAAGAAAGCTGAAGGAGGAGGTTTCTTGGATATATTGGGATCCTTAAATTTTTtct
s HiC_scaffold_1  13381952 254 + 233722169 CCCTGTTTTGCCGCACCAGGCTTTCTTT-AGCTCGGTAGGAGGCAGCGACGTGCTTCCTGTGTTT-TCCCTGCAGCTTGGCACCTTCTCCCCAGGCTGTGTGTCACCTGCTGCAGTGTGCCCACTTGTCTTCCAGTTTC---ACAGCGACATCACCCCTGGAGAGGCCAGGATGTTCTCCTTTGAGTTTTGGGTGGCACTCGGAAGAGAATAAG--GTCTGA-----GAGGCCTCTTAGGTGTGTTGGGATCCTTGAGCTTCTTTT

a score=7507
s chr3           107895960 796 + 160039680 CCAAGTCTATGGTTCTGGGTTACTGGGATATCCGCGGGGTGAGTGGTCCCTCGCCAGCCCAGCCTCTGGGACAGAGAGGTGCAGGCGGCCGGGCGGGGGTCAGGGGCCGGTGGGCCGATCTCCAGCCTACCTATGGGGTCCCCAGGACTGTGGGTAGAGGAATAAGGTACTGGAAGTTCCCGGGCGTGAGCGAAGGGGCTGCCTAAGGACAATTTCCCTGGACAGGACGCAGGAGCTTGGCAGCGTTGGGTTGGGGACATTGACGGAGGGG---------GCCTGCGAGCAAGT--GGGCACTGCGCAGGCGCGCTGAC---------CGGGGTCTTTCTCCATCCCCTG-------CTTTTAGCTGGCTCATGCTATCCGCATGCTTCTGGAGTTTACTGATACCAGCTATGAGGAGAAACGGTACATCTGTGGGGAAGGTAATGAA---TGTCTGTG--------------------------GGTGCGCTACAGT----------------TGTTTTTTAC-----------CCAGAGGGTTGTAC------------------------------------------CACACCAAGAT---GGTGTGGGACCCCCTGCTCCTGTAAGCTGGGAACTTT-----------------------GCCAAGAGAGGCCCATAGA-GTTATCT---------CTTGCTG----TTCAGGCCCATCTTTGCAG----------AAACTC-----AAGGGTTAGTTTTTGGGGATTG-----GGAACTTGAGATAACAGGTCTAAGTCTCAGCTAGGTCGGTAACGGGCTTGGGTCCCACTTCTCTCTTACAGCTCCTGACTATGATAGAAGCCAATGGCTGGACGTGAAATTCAAGCTAGATCTGGACTTTCCTAACGTAGGTGGTTTTGGAGGAGTGGGCAGAAGGGAAGGCCTTCAAGTGTATCTGTTTTCACTTCATCTC
s HiC_scaffold_1 115090709 875 + 233722169 CCATGCCCGTGACGCTGGGTTACTGGGACATCCGCGGGGTAAG--------CGCGAGGTCTGTCTGAGGGGT-GAGAGGAACACGCAG---------AGCTAAGAGCTGGGGAGC---------------------------------TGGAGGCAGAATAAAAGCACGCAAAACCTTCTCAGGCTTGCTGGAGGCCTCTGCTTG---------TCCCT---CAGTGCTCAGGAGCT------CACTGGTGTGCAgacctttttgtgtgtgtgcacgatCGCCTGTGAGATTGTTAGGAGGAGGTGGAGGCCCACAGTCAGGATCCCTCGGACTCTGACTTCTGCCCCTGGCCGTCCCTTTCAGCTAGCCCATGCCATCCGCCTGCTCCTGGAATACACAGACACCAGCTATGAGGAGAAGAGATACACCATGGGGGACGGTAATGGCACTTTCCTGTGCCGACCCCTCCCCAATCCTGATGATTGGTGCCCAGCAGCCCATGCCCTGCCCACCTGTTGCTTACTTTAGCAGCCTCCAGCTGGCTCTACAGCATGCCCCTTTCAGAAACCTCTCTGAAGTTGCAGTTTGGTCACACTAAGAGCAGAGCGTCCATCCCTCTCTATCTGTAATTAGGACATTTCTAACCCTTTTGTAAGGATCCACAGCCCTTACAAGCCCTCACACTTTACCTTGAAGCAGACTGGCTACGATTCCAGATCCATTGTCTCAGGGTTCTTGCCAGACTCCTTAGAAGTGCCAGTACcatgggaaggagagagggactCCAGAGA---GGTTT-----------------------GACTTCACTTTCTGTTCTCTACCACAGCTCCTGACTATGACAGAAGCCAGTGGCTCAATGAGAAGTTCAAGCTGGGCCTGGACTTTCCCAATGTACG------TGAAGGGTGGGGGTGATTTGGAGAAATTAAAGT-----CATTCCTACCTCATCTC

a score=5301
s chr3           107895961 417 + 160039680 CAAGTCTATGGTTCTGGGTTACTGGGATATCCGCGGGGTGAGTGGTCCCTCGCCAGCCCAGCCTCTGGG-----ACAGAGAGGTGCAGGCGGCCGGGCGGGGGTCAGGGGCCGGTGGGCCGATCTCCAGCCTACCTATGGGGTCCCCAGGACTGTGGGTAGAGGAATAAGGTACTGGAA------GTTCCCGGGCGTGAGCGAAGGGGCTGCCTAAGGACAATTTCCCTGGACAGGACGCAGGAGCTTGGCAGCGTTGGGTTGGGGACATTG------ACGGAGGGGGCCTGCGAGCAAGTGGGCACTGCGCAGGCGCGCTGACCGGGGTCTTTCTCCAT---CCCCTGCTTTTAGCTGGCTCATGCTATCCGCATGCTTCTGGAGTTTACTGATACCAGCTATGAGGAGAAACGGTACATCTGTGGGGAAGGTAAT
s HiC_scaffold_1 115160676 365 + 233722169 CATGTCTGTGACTCTAGGTTACTGGGACATCCGCGGGGTGAG----------------------CTAGGGTTAAATAGTGGGGAGAGGGTTGGCGGGACCAGCTGAGAGGCTGG--GGCCAGATTCTGAAATACAAATCC--TCTTCAGGATTTT------------------CTGGAGCCCTCTGTTCC--------AGTCAGAAGGCCCCTTGAAA-------CTTtgagaggggtgtgtgtgtgtg----tgttgggggaagGTGAGTGGTTTCCATGGAGGG----TGTGAA-----GGTCACAGTCCAAGTATCTTCATCTTTGACTTCTTTCATGGGTCACTTCTGCCAGCTGGCTCACGGCATCCGCCTGCTCCTGGAATATACAGACACCAGCTATGTGGAGAAGAGATACACCATGGGGGACGGTAAT

a score=3889
s chr3           107896277 102 + 160039680 TCTCCATCCCCTGCTTTTAGCTGGCTCATGCTATCCGCATGCTTCTGGAGTTTACTGATACCAGCTATGAGGAGAAACGGTACATCTGTGGGGAAGGTAATG
s HiC_scaffold_1 115111475  98 + 233722169 TCTCCATCTC----TCCCAGTTAACTCATCCCATCCGCCTGATCCTGGAATACACAAACTCGGGCTATGAAGAGAAGAGATACAACATGGGGGATGGTAATG

a score=5789
s chr3           107896611  99 + 160039680 CTTCTCTCTTACAGCTCCTGACTATGATAGAAGCCAATGGCTGGACGTGAAATTCAAGCTAGATCTGGACTTTCCTAACGTA---------------GGTGGTTTTGGAGGAGT
s HiC_scaffold_1 115161464 114 + 233722169 CTTCTCCATCACAGCTCCTGATTATGATCAAAGCCAATGGCTGAACGAGAAGTTCAAGCTGGGACTTGACTTTCCCAATGTAGGTACAAGGGATAGGGGTGGTTTGGGGGAAGT

a score=6216
s chr3           107896611 119 + 160039680 CTTCTCTCTTACAGCTCCTGACTATGATAGAAGCCAATGGCTGGACGTGAAATTCAAGCTAGATCTGGACTTTCCTAACGTAGGT---GGTTTTGGAGGAGTGGGCAGAAGGGAAGGCCTTC
s HiC_scaffold_1 115111948 122 + 233722169 CTTTTCAACCACAGCTCCCGACTATGACAGAAGCCAGTGGCTGAATGAGAAATTCAAGCTGGGCCTGGACTTTCCCAATGTAGGTAAAGGGTTGGGGGTGGTTTGGGAAAAGTAAAGTCTTC

a score=11083
s chr3           107897167 405 + 160039680 ACTTTCTATTTATTTAGT-TATTTCTCCTGGCTTCTACTCTCACACACCTTG------------CAAGTCTTCTCTTTTCCAGAGGAGTGGCGGTCCTGGAGGACTAGGTTCACA-TTAACTTTCCCCTTCT--------AGCTGCCCTACCTCATGGACGGGAAGAACAAGATCACCCAGAGTAACGCCATCCTGAGATACATCGCACGCAAGCACAACATGTGTGAGTG-----GGCTGAAGGGGATAGGAGGGAGGAGGCAGTTGGC-TCACCTGGAGGTTGGC--------AATCCTGAGGGTGATTTGTTGCCATCT-GGCTGCAGGTGGTGACACTGAAGAAGAAAAGATACGAGTAGACATCATGGAGAACCAGATCATGGACTTCCGCATGCAGCTGGTTCGCCTCTGCTACAATTCTAACCACGTAAGTTTCC
s HiC_scaffold_1 115112162 433 + 233722169 ATTCCCTTTTTGTGCAGTATATTTGTGGAAACTTGTCCTGACAAGCACATTGAGGGCCAGGTCTCATGTCTGCACTAGCTCAGGGAAGGGATGTT----GGGACCTAGAATCCCAACTGACTTTTCCTGGCTGTCCATGCAGCTGCCCTACCTAATTGATGGAACTCACAAGCTCACCCAGAGCAATGCCATCCTGCGCTACATTGCCCGCAAGCACAACTTGTGTGAGTAGACCTGGCTTTAGGGATGGGGATGGA-----CAGTGGTCATCTCCCTAAGCTTTGCTGGGGTGGGTTTCTGAGGGTGAGTCTCTGTTTTGTGGGTTTCAGGTGGGGTGACCGAAGAGGAAACGATTCGCATGGACATTTTGGAGAACCAGGTTATGGACATTCGCATGCAGCTCATCATGCTGTGTTACAGCCCTGATTTTGTGAGTCCCC

a score=10291
s chr3           107897218 355 + 160039680 CAAGTCTTCTCTTTTCCAGAGGAGTGGCGGTCCTGGAGGACTAGGT---TCACATTAACTTTCC-------CCTTCTAGCTGCCCTACCTCATGGACGGGAAGAACAAGATCACCCAGAGTAACGCCATCCTGAGATACATCGCACGCAAGCACAACATGTGTGAGT-GGGCTGAAGGGGATAGGAGGGAGGAGGCAGTTGGCTCACCTGGAGGTTGG----CAATCCTGAGGGTGATTTGTTGCCATCTGGC-TGCAGGTGGTGACACTGAAGAAGAAAAGATACGAGTAGACATCATGGAGAACCAGATCATGGACTTCCGCATGCAGCTGGTTCGCCTCTGCTACAATTCTAACCACGTAAGTTTCCT
s HiC_scaffold_1 115091717 361 + 233722169 CATGTCTGCCCTAACTCAGGGAAGGGATGCT-----GGGACCTGGTGTCTCACCTGACCTTTCTTGACTGTCTATGCAGCTGCCTTACCTAATTGATGGGACTCACAAGCTCACCCAGAGCAATGCCATCCTGCGCTACATTGCCCGCAAGCACAATATGTGTGAGTAGAGCT--AGCTGCTGGGTGTGAG--GGCACATGG-TCATCTCTTGGCTGGGGTCAGAAGCTGAGGGTGAGTCTCTGTTGTGCGGTGTATAGGtggagagacagaagaggagaaGATTCATGTGGACATTTTGGAGAATCAGGTTATGGACCTCTCCAATCAACTGGCCACAGTCTGCTATAGCCCAGACTTTGTGAGTCATCT

a score=8909
s chr3           107897246 324 + 160039680 GGTCCTGGAGGACTAGGTTCACATTAACTTTCCC------CTTCTAGCTGCCCTACCTCATGGACGGGAAGAACAAGATCACCCAGAGTAACGCCATCCTGAGATACATCGCACGCAAGCACAACATGTGTGAG--TGGGCTGAAGGGGATAGGAGGGAGGAGGCAGTTGGCTCACCTGG--------AGGTTGGCAATCCTGAGGGTGATTTGTTGCCATCTGGC-TGCAGGTGGTGACACTGAAGAAGAAAAGATACGAGTAGACATCATGGAGAACCAGATCATGGACTTCCGCATGCAGCTGGTTCGCCTCTGCTACAATTCTAACCACGTAAGTTT
s HiC_scaffold_1 115097316 333 + 233722169 GATGCTGAGACATCAAGCTCAACTGACCTTTCCTGCTTCTCCTGTAGCAACCCTACTTAATTAATGGGACTCACAAGCTCACCCAGAGCAGTGCCACCCTGCATTATACTGCACACAAGAATAACATATGTAAGGTTTAGCTGCTGGTTGT-----GGGGCACATGGTCATCTCTCTGGGCATGGCTAGGGTCAG--AGGCTGAGGGTGAGTTTCTGTTGTGTGGTGTATAGGtggggaaagagaagaagagaagattTGTGTGGACGTTTTGGAGAAACAGGTTATGGACACCTACATGCAGCTGGCCAGGCTCTGCTGCAG-CCCAAGTTTGTGAGTTT

a score=11266
s chr3           107897285 288 + 160039680 AGCTGCCCTACCTCATGGACGGGAAGAACAAGATCACCCAGAGTAACGCCATCCTGAGATACATCGCACGCAAGCACAACATGTGTGAGTG-----GGCTGAAGGGGATAGGAGGGA-GGAGGCAGTT------GGCTCACCTGGAGGTTGGCAATCCTGAGGGTGA-TTTGTTGCCATCTGG-CTGCAGGTGGTGACACTGAAGAAGAAAAGATACGAGTAGACATCATGGAGAACCAGATCATGGACTTCCGCATGCAGCTGGTTCGCCTCTGCTACAATTCTAACCACGTAAGTTTCCT
s HiC_scaffold_1 115161828 296 + 233722169 AGCTGCCCTACCTAATTGATGGGACCCACAAGCTCACCCAGAGCAATGCCATCATGCGCTACATTGCCCGCAAGCACAACCTGTGTGAGTATGGCTGGCTTCTTGGTGTGGGGGGAACAGTGGCCATTCCCCTAAGCTTCACTGGAGTCAG---ATGCTGAGAGTGAGTCTCTTG---TGTGGACTTCAGGTGGTGAGACAGAAGAGGAGAAGATTCGTGTGGACATTTTGGAGAACCAGCTTATGGATACCCGCATGGAGCTGGCCAGGCTTTGCTACGACTCTGACTTTGTGAGCCCCCT

a score=8125
s chr3           107897286 286 + 160039680 GCTGCCCTACCTCATGGACGGGAAGAACAAGATCACCCAGAGTAACGCCATCCTGAGATACATC---GCACGCAAGCACAACATGTGTGAGTGGGCTGAAGGGGATAGGA---GGGAGGAGGCAGTTGGCTCACC----------TGGAGGTTGGCAATCCTGAGGGTGATTTGTTGCCATCTGG-CTGCAGGTGGTGACACTGAAGAAGAAAAGATACGAGTAGACATCATGGAGAACCAGATCATGGACTTCCGCATGCAGCTGGTTCGCCTCTGCTACAATTCTAACCACGTAAGTTTCC
s HiC_scaffold_1 115187255 299 + 233722169 GCTGCTGTGTTTAATTAAAGGAATTCATAAGCTCACCCAGAGAAATGCTGTTCTGTGCTACATTATTGCCTACAAGTACAACCTGTGTGAGTAGACC--AGGTTTTGGGGTATGGGAATGGACAGTGG--TCATCCTTCTGGTCTTGGAGGGGTGTGATGCTGAGGACAAATCTTTGTTTTGTGGGCTTCAGGTGGagagacaaaagaggaaaagatttctGTGGACACTTTGGAAAACCATGTCATGGACACCCACATGCAGCTTGTCACAGTTCGCTACAACTCAAATTCTGTGAGTCCCC

a score=9208
s chr3           107897910 390 + 160039680 TCACCCCCATTGAGCCATGTGTTGACCCAACAATAGCTATTGCT--TTTCTTTCCTAGGAAAACCTGAAGCCTCAGTACTTGGAACAGCTACCTGCACAGCTGAAACAATTCTCATTGTTCCTGGGGAAATTCAC-ATGGTTTGCAGGAGAAAAGGTAGGGAGAAGGCACAGGGAGAGGCTGCCTGCCTGCCTGTCTATCTCTGCAGGTATTGGTGAGTTCCTTAGGCATGACACTTCATTGTCCTCATT-------CTTTCTAGCTGACCTTT--GTGGATTTTCTCACCTATGATGTCTTGGATCAGAACCGTATATTTGAGCCCAAGTGTCTGGATGAGTTCCCAAACCTGAAGGCTTTCATGTGCCGTTTTGAGGTGATGTTCACTACCCCTTTCTCA
s HiC_scaffold_1 115189032 359 + 233722169 TCCCCTCTGCCAGGTCACTTGT--GTCTGAGGATAGTGACAGCTGATTTCTGCTTCAGGAGAAA-GGAAGCCAGAATACTTAGGGAGACTCCTCAACAAGATGAAACTCTTCTCACAGTTTCTGGGGGAAGTGGCCATGGTTTGCAGGGGAAAAGAGATGGGGAAG--------AGAAGTTGTcattct------------------------------tcctcagttatgagctTTCAGTCTACTCATTGATGGCCTTTTGCAGATCACCTATATGTGGATTTCCTTGTTTATGAGGCTCTTGACCAGAACCATATATTTGAACCTAAGTGCCTAGATGCATTTCCAATCCTAAAGGACTTCACTCAC--TTCTGAGGTGATATTCCTCAACCTTTTTCCA

a score=11557
s chr3           107897953 329 + 160039680 TTTTCTTTCCTAGGAAAACCTGAAGCCTCAGTACTTGGAACAGCTACCTGCACAGCTGAAACAATTCTCATTGTTCCTGGGGAAATTCACATGGTTTGCAGGAGAAAAGGTAG-GGAGAAGGCACAGGGAGAGGCTGCCTGCCTGCCTGTCTATCTCTGCAGGTATTGGTGAGTTCCTTAGGCATGACACTTCATTGTCCTCATTCTTTCT--AGCTGACCTTTGTGGATTTTCTCACCTATGATGTCTTGGATCAGAACCGTATATTTGAGCCCAAGTGTCTGGATGAGTTCCCAAACCTGAAGGCTTTCATGTGCCGTTTTGAGGTGATG
s HiC_scaffold_1 115163058 310 + 233722169 TTTTCTGCCTCAGGAGAAACTGAAGCCAGAATACTTGAACCGACTCCCTGAAATGATGAAGCTGTTCTCACAGTTCCTGGGAAAGCAGCCATGGTTTGCAGGGGACAAGGTAGAGGGGAAAGTGATGGGAGGAGAAG---------TTGTCATTCTTCCCTGG---TTGTGAGCTTC----------CAACCCACTCTCCCTTGGCTTTCTACAGATCACCTTTGTGGACTTCCTCGCTTATGACACCATTGAGAGGAACCAAGTATTTGAGCCTACATGCCTAGATGCGTTCCCAAacctgaagaacttcatatcCCGCTTTGAGGTGATG

a score=9857
s chr3           107897953 339 + 160039680 TTTTCTTTCCTAGGAAAACCTGAAGCCTCAGTACTTGGAACAGCTACCTGCACAGCTGAAACAATTCTCATTGTTCCTGGGGAAATTCACATGGTTTGCAGGAGAAAAGGTAGGGAGAAGGCACAGGGAGAGGCTGCCTGCCTGCCTGTCTATCTCTGCAGGTATTGGTGAGTTCCTTAGGCATGACACTTCATTGTCCTCATTCTTTCTAGCTGACCTTTGTGGATTTTCTCACCTATGATGTCTTGGATCAGAACCGTATATTTGAGCCCAAGTGTCTGGATGAGTTCCCAAACCTGAAGGCTTTCATGTGCCGTTTTGAGGTGATGTTCACTACCC
s HiC_scaffold_1 115093017 315 + 233722169 TTTTCTACATCAGGAGAAGCTGAGGCCCGAGTACTTGGAACAAATCCCTGAAAAGATGAagctcttttctgatttcctgggGAAAAAGCAATGGTTTGTTGGTGACAaggtaaa--------atggaaagaattcGC------AATTGTCATCcttttcaggt--tacaaaatttcTAGCACAT------TCATT--CTTGGCTTTCTGCAGATCACCTATGTGGATTTCCTCACTTATGATGTACTTTGCCTGCACCGTACATTTGACCCCAGCTGTCTGGAGGCGTTTCCGAATCTGAAGGATTTTATTTCTCGCTTTGAGGTAATGTCTATCATCC

a score=11077
s chr3           107897954 340 + 160039680 TTTCTTTCCTAGGAAAACCTGAAGCCTCAGTACTTGGAACAGCTACCTGCACAGCTGAAACAATTCTCATTGTTCCTGGGGAAATTCACATGGTTTGCAGGAGAAAAGGTAGGGAGAAGGCACAGGGAGAGGCTGCCTGCCTGCCTGTCTATCTCTGCAGGTATTGGTGAGTTCCTTAGGCATGACACTTCATTGTCCTCATTCTTTCTAGCTGACCTTTGTGGATTTTCTCACCTATGATGTCTTGGATCAGAACCGTATATTTGAGCCCAAGTGTCTGGATGAGTTCCCAAACCTGAAGGCTTTCATGTGCCGTTTTGAGGTGATGTTCACTACCCCT
s HiC_scaffold_1 115114098 321 + 233722169 TTTCTGCTCCAGGAGCAAAAGAAGGCAGAGTTCTTGGAGGGCATCCCTGACAAGATGAAGCTCTTCTCACAGTTCCTGGGGAAGCTGCCTTGGTTTGCAGGGAACAAGGTAAAGGGGAGGGAGATGGGGAGGAGGACT---TGCCAGTCT-----TCCAGGT---TATGAGCTTCCAGCCCAT------TCATCATCAGC--TCTCTGCAGCTCACCTACGTGGATTTCCTGGCTTATGATGTCCTCGACCAGTACCGCATGTTGGAGCCCAAGTGCCTGGAGGCATTCCCTAACCTGAAAGACTTCATATCCCGCTTTGAGGTGACACTCTTGACTCTT

a score=3956
s chr3           107898429 109 + 160039680 CCTGGTATGCTTTTTCTTCAGGCTTTGGAGAAGATTGCTGCATTCCTGCAGTCTGACCGCTTCTTCAAGATGCCAATCAATAACAAGATGGCCAAGTGGGGTAACAAGT
s HiC_scaffold_1 115095215 109 + 233722169 CTTTGTTTTCCCTACTTGCAGGGCTTGAAGAAGATCTCTGCCTACATGAAGTCTAGCCGCTTCCTCGCAGCACCTTTATATACAAAGACGGCCACATGGGGCAACAAGT

a score=11684
s chr3           107908641 380 + 160039680 TCCAAGAGGAAGTGAGATCAAGG-----CATCACCTCAAAGCGGCCCATGAAGTCCTTCAGGTTTGGGAAGGTGTCCAGGCACTTGGGCTCAAACATACGGTGCTTATCAAGGACATCATAAACAAGAAAGTCCACATAGGTAATCT-GCAGGAGGCCC-----AGGGTGAGTACAATGGAATT------TGATGCCTGGGAAGGATGGCAACCCTTCCTTCCCACCCCCTCCCTTTACCTTGTCCCCTGCAAACCATGGCTACTTGCCCAGGAGCTCAGAGTAGAGCTTCATCTTGTCAGGGAGACCCTCTAAGTTTCTTAAGCTTCCGTTTCTCCTGAGGTAAGGGGGAAAAAGCAA------TCCCTACCCTCAGATACA-GGCTCCTCCAGACACAGGCT
s HiC_scaffold_1 115201381 400 + 233722169 TCTAAGAGAAAGGTA---CAGGGAGCATCATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGATGGTCAGGTCTCAGGTGTTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGCCTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAG-TACTGAGGTTTCATTTTATCCTGGGAAATGGGGGCAAAAGCAAGAATAGCTGTTGTCATCATCTACATAGCTAATCAAGACACAGACT

a score=7590
s chr3           107909777 295 + 160039680 GGGGACTCACAAACTCAGGGCTGTAGCAGACCATTGCAAGCTGCCTCCGAGTGTCCACAGCCTGGTTCTCCAAAACGTCCATACGAATCCTCTCCTCCTCTGTCTCTCCACCTGCAGCCCTCACAGCCCAGACTCACCCTCAGCAGC--CCACCCCAGATAAG------------------------CCCAGGGAAATGACCA---CCATCCCCCA----------------CCCTGCAGCCA----------------------GCCCCACTCACACATGTGGTGCTTCCGGCCAAGGTAGCACAGGATGGCATTGCTCTGCGTAATCTTGTGTGATCCATCAATTAAATATGGCAGCTGG
s HiC_scaffold_1 115202045 362 + 233722169 GAAAACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACCTCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTGG

a score=5715
s chr3           107910348 106 + 160039680 CACCTACATTGGGAAAGTCCAGGCCCAGCTTGAATTTCTCATTCA-CCATTGGCTTCATTCATAGTCAGGAGCTGTGGTGGACAAGAGGATGTAAAAAGAAATCACT
s HiC_scaffold_1 115203052 105 + 233722169 CACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtg--agagagagagaagtgggaACCAATCTCT

a score=4073
s chr3           107910839 104 + 160039680 AGGGTGTCATTACCATCCACCATGGCGTATCTCTTCTCCTCATAGCTTGAGTCTGTATATTCCAGGAGCAGGCGAATGGCTTGACCCAACTAGGAGACATGGct
s HiC_scaffold_1 115203391 104 + 233722169 AGAGCAACCTTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAGGGGAGACAGCT

a score=7703
s chr3           107919609 204 + 160039680 AAATTAAGTTCCAATCTTGTT-CTTGGCACCTTCTAGGAGGTCATCTGACCCAAAATGATGCTGAGCATCTCCTTCC-AGACACTGGCTGTCAGAAACGTACTGAAGTG-GATGATGAACACAAACTTCGCAGTTCCCACAAGACGTGCATGGCTGCAGACATCACTGCTGACGCTCTGGGAGAAGAGTGAAAAggttatgtgtagt
s HiC_scaffold_1 183145786 206 + 233722169 aaagaaagttactCTTTTATTTCATAGCACTTCATAGGCAATCAGCTGCCTCAATAGGAAGCTAAA-ATCTCCTTCCCAGCCACCAGCTACCAGAAACTCACTGACGTATAACAATGAATGCAAATTTCATACTTCCTATGAAATGCATATGGCCACAGAAGTCGCTGCTGGTGTTCTGGGTGAAGAATGGAAGAGTTATATGTGAT

a score=9948
s chr3           107928856 306 + 160039680 GAGCGTCCGTCACCTCAAAGCGCGCTATGAAGTCCTTCAGGTTTGGGAACGCATCCAGGCACTTGGCCTCAAACACTTGGTTCCTCTCAAGCACATCGTAAGCAATGAAATCCACAAAGGTGATCTGTAGGAAGCCGAGGGTGAGTGTGCTTGGATCAGGTA------------ACCTGGGAAGGATGGCAA-CCCCTCCTCCCCACCCCTCCCTTTACCTTGTCCCCTGCGAACCATGGCCGCTTGCCCAGGAACTCAGAGTAAAGCCTCATCATTCCAGGGAGTTGCTCCAGGTACCCTGGCTTCAGCTTCTCCTAG
s HiC_scaffold_1 115201400 317 + 233722169 GAGCATC-ATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGA-TGGTCAGGTCTCAGGTGTTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGCCTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGG

a score=8733
s chr3           107930264 293 + 160039680 AGGACTCACAAAGTCAGCGTTGTAGCAAAGCCTCGCCAGCACCATGCGGTTGTCCATAAGCTGATTCTCCAGAATATCCACACGGATCCTTTCCTCCTCTGTCTCCCCACCTGTGAAAAACACAGCCCAGACTCACACTCAACATGCCACCCTGG-------CCAAGCCCAGCTGGTGGCCATCGGTCCCCACCCCTG----------------------------------------------------CAGCCG----------------------GCCCCACTCACACAGGTTGTGCTTGCGGCCAAGGTAGCGCAGGATGGCATTGCTCTGCGTGATCTTGTGTGACCCATCGATCAAGTAGGGCAGCTG
s HiC_scaffold_1 115202046 360 + 233722169 AAAACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGAC--------------AACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACCTCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTG

a score=6200
s chr3           107930821 100 + 160039680 ACTTACGTTAGGAAAGTCCAGGCCCAGCTTGAATTTCTCATTCAGCCACTGGCTTTGGTCATAGTCAGGAGCTGTGGTGGACAAGATAATATGAAATCAA
s HiC_scaffold_1 115203053  99 + 233722169 ACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtgagaga-gagagaagtgggaACCAA

a score=4150
s chr3           107931310 101 + 160039680 TCACCATCACCCATGGTGTATCTCTTCTCCTCATAGCTTGAGTCTGTGTATTCCAGGAACAGGCGAATGGCATGGGCTAGCTGTAAGAGACAA---GAGATGGT
s HiC_scaffold_1 115203400 104 + 233722169 TTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAGGGGAGACAGCTCGGGATGGT

a score=11212
s chr3           107940963 354 + 160039680 TCCAAGAGGAAGCAGGACCAGGG-----CATCACCTCAAAGCGGGCCATGAAGTCCTTCAGGTTTGGGAAGGCGTCCAGGCACGTGGGTTCAAACATTCGATGCTGATCAAGGACATCATAGACGAGGAAGTCTGCAAAGGTGATCTGCAGGAAG-------TGAGGCTCAG---TGAGGTGGGATCCG-----GATGCCTGGGAAGAATGGCA-----GCTCCTCCTGCCCACCTGCTACCCTCTCTACCTTGTCCCCTGCAAACCATGGCTGCTTCCCCAGGAACTCCGAGTAGAGTTTCAGCTGATCTGGGAGGCCCTTCAAGAACTCTGGCTTCCGTTTCTCCT--------GAAGCAGAA--AATAATAGCTGTCATAACCCTC
s HiC_scaffold_1 115201381 375 + 233722169 TCTAAGAGAAAG---GTACAGGGAGCATCATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGATGGTCAGGTCTCAGGTG---TTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGC--------CTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGGGAAATGGGGGCAAAAGCAAGAATAGCTGTTGTCATCATC

a score=8197
s chr3           107942121 364 + 160039680 TGCAGACTCACAAAGTCAGCGCTGTAGCAAAGCATGCCCATCTGAATTCGAGTGTCCATGACCTGTTTCTCCAAAATGTCCACACGGATCCTCTCCTCCTCTGTCTCTCCACCTGCAGCACACACAGCCCAGACTCACTCTCAG---------------------------CAGCCCA----CCCTTGCCAAGA--------------------CCAGGGTAGGTGGCCATGGTCCCCCACCC----------TGCAGCCAGC-----CCCACTCACACAGGTTGTGCTTCCGGCCAAGGTAGCGCAGGATGGCATTGCTCTGGGTGACCTTGTGTGACCCATCAATTAAGTAGGGCAGCTGGATGGACAAGCAGGGAAGGTCAGATGGGATATGAGGTCCCTCCATCCCTTCCCTGGGTGAGAGAAGAC
s HiC_scaffold_1 115202044 415 + 233722169 TGAAAACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACCTCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTGGG---------AATGAAAGACAGACTCAATGAACAATTTCTCTAT------CCTGTGGAAGAGAAGAC

a score=6222
s chr3           107942694 96 + 160039680 CACCTACATTGGGAAAGTCCAGGTCCAGCTTGAACTTGTCATTCAGCCACTGGCTTCTGTCATAGTCAGGAGCTGTGGTGGACAAGAGGATGTGAA
s HiC_scaffold_1 115203052 96 + 233722169 CACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtgagagagagagaagtgggaA

a score=4927
s chr3           107943230 103 + 160039680 AAGAATGTCATTACCGTCCCCCATGGCGTATCTCTTCTCTTCATAGCCTGTTTCTGTGTATTCCAGGAGCAGGCGGATGGCGTGACCCAGCTGTGAGAGATAG
s HiC_scaffold_1 115203390 103 + 233722169 AAGAGCAACCTTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAGGGGAGACAG

a score=8933
s chr3           107950767 327 + 160039680 TCCAAGAGGAAGCAGGACCAGGG-----CATCACCTCAAAGCGGGCCACGAAGTCCATCGGGTTTGGGAAGGCGTCCAGGCACGTGGCCTCAAACATTCGATGCTGATCAAGGACATCATAGACGAGGAAGTCTGCAAAGGTGATCTGCAGGAAG-------TGAGGCTCAG---TGAGGTGGGATCCG-----GATGCCTGGGAAGAATGGCA-----GCTCCTCCTGCCCACCTGCTACCCTCTCTACCTTGTCCCCTGCAAACCATGGCTGCTACCTAAGGAACTCAGAGCAGACCTTCAGCTgatctgggaggccctataagaactctggttttcacttctcctaaga
s HiC_scaffold_1 115201381 338 + 233722169 TCTAAGAGAAAG---GTACAGGGAGCATCATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGATGGTCAGGTCTCAGGTG---TTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGC--------CTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGGGA

a score=4919
s chr3           107951966 293 + 160039680 TGAGGACTCACTAAATCAGGACTGTAG----ATCATGCTCATCTGCATGCCAGTGTTCATTGCCTGGTTCTCCAAAATCTACACACACATCCTCTCCTTCTCTATCTGCTCATCTGCAACACACACAGCACAGACTCACTCTCAGCATCCTGCCC-----------------CAGTCAAGCCA--------AGAGGGATGG------CTTCTGTTCC--------------TAACCCTGCAGCCA----------------------GCCTTAACCACACAGGTCATCCTTATAGGCAGTGGGATACAGGATGTCATTGCTCTGGGTGATCTTGTGTGACCCATCAATTAAGTAGGACAGCTGG
s HiC_scaffold_1 115202044 363 + 233722169 TGAAAACTTACATGTTCAGAGTTGTAGCAAAGTCGTGC-CAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACCTCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTGG

a score=5073
s chr3           107952535 105 + 160039680 CACCTACATTGGGAAAATCCAGGCCCAGCTTGAAGTTTTCACTCAGCTGCTGGCTTCATTCATAA-CAGCAGCTGTGATAGATAAGATAATGTGAAAAGCTCTCCT
s HiC_scaffold_1 115203052 106 + 233722169 CACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtgagagagagagaagtgggaACCAATCTCTT

a score=4765
s chr3           107953032 104 + 160039680 AAGAATGTCATTACCGTCCCCCATGGCGTATCTCTTCTCTTCATAGCCTGTTTCTGTGTATTCCAGGAGCAGGCGGATGGCGTGACCCAGCTGTGAAAGATAAC
s HiC_scaffold_1 115203390 104 + 233722169 AAGAGCAACCTTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAGGGGAGACAGC

a score=10243
s chr3           107966080 326 + 160039680 CATCACCTCGAAGCGGGCCAGGAAGTCCCTCAGGTTTGGGAAGGCGTCCAGGCACTTGGGCTCAAACATACGATACTGGTCAAGAATGTCATAAGCAAGGAAATCCACATAGGTGACCT-GCAGGAAGCCA-----AGGGTGAGCGCTCTGGAATC------TGACACCAGGGAAGGATGGCAA-CCCCTCCTCCCCACCCCTCCCTTTACCTTGTCCCCTGCAAACCATGGCCTCTTGCCCAGGAACTCAGAGTAGAGCTTCATTTTCTCAGGGATGGCCTTCAAGAACTCTGGCTTCTGCTTCTCCTGAGGCA-------------GAGAACAGCTGGCTGTCACCACCT
s HiC_scaffold_1 115201406 351 + 233722169 CATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGATGGTCAGGTCTCAGGTGTTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGCCTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGGGAAATGGGGGCAAAAGCAAGAATAGCT-GTTGTCATCATCT

a score=7428
s chr3           107967568 350 + 160039680 ACTCACAAAATCGGGACTGCAGCAGACTATCATGAGCTGTATGCGGGTGTCCATAACTTGGTTCTCCAAAGTATCCACACGGATCCTCTCCTCCTCTGTCTCTCCACCTGCAGCACACA------CAGAACACTC-----AGCATCC-------------------CAACCCAGCCAAGCC------AAGGAGATTGCCTGATATGCCCTACCCTGCAGGCAA------------------------------------------CCCCACTCACACAGGTTGTGCTTCCGGCCAAGGTAGCGCAGGATGGCATTGCTCTGGGTGACCTTGTGTGACCCATCAATTAAGTAGGGCAGCTGGATGGACAAGCAGGGAAGGTCAGATGGGATATGAGGTCCCTCCATCCCTTCCCTGGGTGAGAGCAGAC
s HiC_scaffold_1 115202049 410 + 233722169 ACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCC---AGACACCTCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTGGG---------AATGAAAGACAGACTCAATGAACAATTTCTCTAT------CCTGTGGAAGAGAAGAC

a score=5382
s chr3           107968128 96 + 160039680 CACTTACATTGGGAAAATCCAGGCCAAGATTGAATTTCTCACTCAGCCACTGGCTTCGGTCAAAGTTGGGGGCTGTGGTGGACAAGAGGATGTGAA
s HiC_scaffold_1 115203052 96 + 233722169 CACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtgagagagagagaagtgggaA

a score=4438
s chr3           107968758 90 + 160039680 TTACCATCCCCCATGACATATCTCTTCTCCTCATAGCTTGAATCTGTGTATTCCAGGAGCAAGCGGATGGAGTGAGTCAGCTGGAAGAGA
s HiC_scaffold_1 115203400 90 + 233722169 TTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAGGGGAGA

a score=11586
s chr3           107983906 358 + 160039680 TTCAAGAGGAAGTGAGATCAGGG-----CATCACCTCAAAGCGACCCATGAAGTCCTTCAGGTTTGGGAAGGCATCCAGGCACTTGGGCTCAAATATTCGGTGTTGATCAAGGACATCATAAACAAGAAAATCCACATAGGTGACCT-GCAGGAAGCCA-----AGGGTGAGTGCTCTGGAATT------TGATGCTTGGAAAGGATGGCAACCCCTCCTTCCCACCCCCTCCCTTTACCTTGTTCCCTGCAAACCATGGCTGCTTGCCCAGAAACTCAGAGTAGAGCTTCATCTTCTCAGGGAGACCCTCTAAGTACTCTGGCTTCTTTTTCTCCTG--------------AAGCAGAAAACAACTGTCACCACTTTC--------------AGACACAGAC
s HiC_scaffold_1 115201381 399 + 233722169 TCTAAGAGAAAGGTA---CAGGGAGCATCATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGATGGTCAGGTCTCAGGTGTTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGCCTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGGGAAATGGGGGCAAAAGCA-AGAATAGCTGTTGTCATCATCTACATAGCTAATCAAGACACAGAC

a score=9621
s chr3           107985041 291 + 160039680 AACTCACAAAGTCAGGGCTGTAGCAAACCATGGCCAACTGTATGCGGGTGTCCATAGCCTGGTTCTCCAAAATGTCCACACGAATCCTCTCCTCCTCTGTCTCTCCACCTGCAGCACACACAGGCCAGACTCACCCTCAGCATC--CCACTCCAGATAAGC-----------------------CTAGAAAATGACTAC-----TATCCTCCA----------------CCCTGCAGCCA----------------------GCCCCACTCACACAGGTTGTGCTTTCGGGCAAGGTAGCGCAGGATGGCATTGCTCTGGGTGATCTTGTGTGATCCATCAATCAAGTAGGGCAGCTGG
s HiC_scaffold_1 115202048 359 + 233722169 AACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACCTCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTGG

a score=7378
s chr3           107985608 505 + 160039680 TCCACCTACATTGGGAAAGTCCAGGCCCAGCTTGAACTTCTCACTCAGCCACTGGCTTCGGTCATAGTCAGGAGCTGTGGTGGACAAGAGGATGTGAAAAGAAATCATGCCAGTATCCCAGCTTCCTTCTCTAGGGAAGGAGTCAGGTAT---GAGAACACCCCCAAGA------------AGATCTGC--AGCCTCACCCAAGAGTAGACAATGCTTCTGAGGACTGTGGACTGTATATCACTAAGATTTTCAAAAGGTTTGAATAAGCCAATTAGTTGAAAAGAGAACCCAGCCCCCCAAATTCAAAACAGTATCTGGAAGAGAC-AGTTTCTAAATCCAACTCCAGGAGCTCTGTAGAGCTGAGCAACAGGGTGTCAGAGCAGTGTCTCTAGGCACCAGTTAGCAGGGGAGCAGGGGCCTGAGAAACAGGGTGTAATC--ACCGTCCCCCATGGTGTATTTCTTGTCCTCATAGCTTGTGTCTGTGTATTCCAGGAGCAGGCGGATGGCGTGAGCCAGCTGG
s HiC_scaffold_1 115203050 434 + 233722169 TCCACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtgagagagagagaagtgggaA-----------CCAATCTCTTGTATAATTCATCTGATGAGAGTG-AAAATATCTAAAAAACAGTCTCAATACATCAAATTCCCAGGCCTGCAAAGCTTAACTTTTTAGT---------CTCGGCAGCCTATTTGCTAACTATC---AAGAT-----GAGGGTTGGTCTGGGC-----------AAAGTGAAACTA----CCCAGGT---GGACATT-------AAAGACGAGTCTCT---CCTCACACCGGATCCTGCAGAGAACTCCAAAACGGAAAGCCA--------------------AGTT--------------GGCCTAGGGCGCCAAGAGCAACCTTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAG

a score=10623
s chr3           108014688 384 + 160039680 ACTAGAAAGCATCATGGACCCGAGAAA-------GAAGACAACCCAAGGGGAAGCAGGATCAGGG-----CATCACCTCGAAGCGGGCCAGGAAGTCCCTCAGGTTTGGGAAGGCGTCCAGGCACTTGGGCTCAAACATACGGTACTGGTCAAGAATGTCATAAGCAAGGAAATCCACATAGGTGACCT-GCAGGAAGCCA-----AGGGTGAGCGCTCTGGAATC------TGACACCAGGGAAGGATGGCAA-CCCCTCCTCCCCACCCCTCCCTTTACCTTGTCCCCTGCAAACCATGGCCTCTTGCCCAGGAACTCAGAGTAGAGCTTCATTTTCTCAGGGATGGTCTTCAAGAACTCTGGCTTCTGCTTCTCCTGAGGCA-------------GAGAACAGCTGGCTGTCACCACCT
s HiC_scaffold_1 115201338 419 + 233722169 ACAAGAAGGTCCCTCGGGGCCTAGAAGAGCCTGTGAATACTTCTCTAAGAGAA--AGGTACAGGGAGCATCATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAGGACAATATGATGGTCAGGTCTCAGGTGTTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGCCTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGGGAAATGGGGGCAAAAGCAAGAATAGCT-GTTGTCATCATCT

a score=5742
s chr3           108015588 104 + 160039680 TAACTTATTT-ACTTACTTGAGTCTGGAATACACAGACTCAAGCTATGAGGAGAAGAGATACACCATGGGCGATGGTAATGCCACCTTCCTGGTCAGACATCTGC
s HiC_scaffold_1 115111492 105 + 233722169 TAACTCATCCCATCCGCCTGATCCTGGAATACACAAACTCGGGCTATGAAGAGAAGAGATACAACATGGGGGATGGTAATGGCACCCTCCGGTCCAGAGCCCTGC

a score=5552
s chr3           108015603 101 + 160039680 CTTGAGTCTGGAATACACAGACTCAAGCTATGAGGAGAAGAGATACACCATGGGCGATGGTAATGCCACCTTCCTGGTCAGACATCTGCT---TCCTTATCACT
s HiC_scaffold_1 115160977 104 + 233722169 CCTGCTCCTGGAATATACAGACACCAGCTATGTGGAGAAGAGATACACCATGGGGGACGGTAATAGCACCTCCCTGCTGAGACCCCTGCCCAGTCCTGATGACT

a score=5559
s chr3           108015603 87 + 160039680 CTTGAGTCTGGAATACACAGACTCAAGCTATGAGGAGAAGAGATACACCATGGGCGATGGTAATGCCACCTTCCTGGTCAGACATCT
s HiC_scaffold_1 115091021 87 + 233722169 CCTGCTCCTGGAATACACAGACACCAGCTATGAGGAGAAGAGATACACCATGGGGGACGGTAATGGCACTTTCCTGTGCCGACCCCT

a score=3721
s chr3           108015610 82 + 160039680 CTGGAATACACAGACTCAAGCTATGAGGAGAAGAGATACACCATGGGCGATGGTAATGCCACCTTCCTGGTCAGACATCTGC
s HiC_scaffold_1 115097045 82 + 233722169 CTAGAATACCCAGAAACCAGCTAGCTGTAGAAAAGGTACATCATAAAAGATAGTAATGGCACCCTCCTGCTCAGATCCTTGC

a score=7647
s chr3           108016321 283 + 160039680 ACTCACAAAGTCAGGGTTGTAACAGAGCATGATGAGCTGCATGCGGGTGTCCATGACCTGGTTCTCCACAATGTCTGCACGGATCCTCTCCTCCTCTGTCTCTCCATCTGCAGCACA--------CACAGTACACTAGGCATC---------------------------CCA---ACCTTGCCAAGCCGAGGAGATTATCCCCCATCTCCCA---------CCCTG---TGGCCAGCC--------------------------CCACTCACCCAGGTGGTGCTTTCGGGCAAGGTAGCGCAGGATGGCATTGCTCTGGGTGATCTTGTGTGATCCATCGATCAAGTAAGGCAGCTGG
s HiC_scaffold_1 115202049 358 + 233722169 ACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACC-TCTTCCAGAAGGAAAGCCCAGAGCTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCTACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTGG

a score=6041
s chr3           108016876 95 + 160039680 CACCTACATTGGGAAAGTCCAGGCCCAGCTTGAACTTCTCATTCAGCCACTGGCTTCTGTCAAAGTCGGGAGCTGTAAACAAGA-AGATGTGAAAA
s HiC_scaffold_1 115203052 96 + 233722169 CACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtgagagagagagaagtgggaA

a score=3952
s chr3           108017337 103 + 160039680 AAGGTGGCATTACCGTCACCCATGGTGTATCTCTTCTCATCATAGCTTGAGTCTGTGTATTCCAGGAGCATGCGGATCGGGTGTGTCAGCTGGGAGAGATGAC
s HiC_scaffold_1 115203391 103 + 233722169 AGAGCAACCTTACCTTCCCCGCAAATGTAGTGCTTCTCCTCATACGCTGTATCGGTGAACTCCAGGAGCAGGCGGATGGCGTGCGCCAGCTAGGGGAGACAGC

a score=4463
s chr3           108031278 76 + 160039680 CACCTATGTTGAGAA-TCCAAGGCCCAACTTGAATTTTCAACCCAGCCACTGGCTTCAGTCATAGTCAGGAGCTGTG
s HiC_scaffold_1 115203052 77 + 233722169 CACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtg

a score=10598
s chr3           108042114 334 + 160039680 GAAGAAGGACCAGGG-----CATCACCTCAAAGCGGGCCACAAAGTCCTTCAGGTTTGGGAAGGCGTCCAGGCACGTGGGTTCGAATATAAGGTGCAGGTCCAGGATATCGTAAGCCAGGAAATCTACAAAAGTAATCTGCAAAGGGCCACGAATGAGAGATGGCATGGAATTCTGTCCCCGAGAAGAATGACAATG------------------CTCAACTTTTCCCCCTTTACCTTTTCACCAACAAACCATGTCCGCTGGCCCAGGAACTGTGAGAAGAGCTTCACCATTCCAGGGAGCTGCTCCAAGTATTCCACCTTCAGTTTCTCCT--------GAGGCAGAA-----AACAGCTGTCACCAT
s HiC_scaffold_1 115201386 366 + 233722169 GAGAAAGGTACAGGGAGCATCATCACCTCAAAGCGGCACATGAAATCCTTCAGATTTGGGAATTCATCCAGGCACTTGGGTTCAAATAGACGGTTCTGGTCTAAGACATCATAGGTGAGGAAATCCACAAAGGTGAGCTAGAAAGAG----GACAATATGATGGTCAGGTCTCAGGTGTTCATAAATAATACCTGTGGAAATAGACAAGTATAATCTCCCTTTCTCTTCGCCTACCTTTTCTCCTGCAAACCATGAGTACTTCCCCAGGAACAAGGAAAATTGTTTTAGTTGTCCAGGCAGCTGTTCCAAGTACTGAGGTTTCATTTTATCCTGGGAAATGGGGGCAAAAGCAAGAATAGCTGTTGTCAT

a score=9304
s chr3           108043315 289 + 160039680 AGACTCACAAAGTCTGGGCTGTAACAGACTCGAGCCAGCTGATTGGAGACATCCATAGCCTGGTTCTCCAAAATGTCCACGCGAATCTTCTCTTCCTCTGTCTCCCCACCTG------------CAGCA-----------------------------------CACACAGCACAGACGCATCTTC---------------AACACCTC--ACACCAGCCAAGCCAAGGGGGTTGTCC-------------------CCCACCCCACCCTGCTGACGCCCCACTCACACAGGTTGTGCTTGCGGGCAATGTAGCGCAGGATGGCATTGCTCTGCGTGATCTTGTGTGACCCATCAATCAAGTAAGGCAACTG
s HiC_scaffold_1 115202047 359 + 233722169 AAACTTACATGTTCAGAGTTGTAGCAAAGTCGTGCCAGTTGCATGCGGAAATccattatttgattttccattatgTCCACTCTAATCTTTTCTTCCTCAGTATCACCACCTGTGGGTCAAATGACAACAAATCACCCTTGGGATCATCCACTCCAGGTGAGTGGCAAACAGTCCAGACACCTCTTCCAGAAGGAAAGTCCAGACACCTCTTCCAGAAGGAAAGCCCAGAG--CTGTCCAGCCATTGAATAATTTAGGCCAACTCTACCCT-----------ACTCACACATGTTGTGCTTGCGAGCGATGTAGCGCAAGATGGCATTGCTCTGGGTGATTCTGTTCTTGCCATCCATCAGGTAAGGAAGCTG

a score=6152
s chr3           108043885 80 + 160039680 TCTACCTACATTGGGAAAGTCCAGGCCCAATTTGAACTTCTCACTCAGCCACTGGCTTCGGTCATAGTCAGGAGCTGTGA
s HiC_scaffold_1 115203050 80 + 233722169 TCCACCTACATTAGGAAAGTCCAGGTCTAGCTTGAATTTCACATCCAGCCACTGGCTTCGATCATAGTCAGGagctgtga

a score=8953
s chr3           108075218 489 + 160039680 GGCCAGCCCCAAGCAGGCTGAGTTCCATACCTTGTGAGAGAAGCCACTCATGAGCACGCTGTTACGGGCCAGCTCGCACATATCGCAGGAGCTGAGCTTCCACACCTGGGTGGCGATGCTGTACTCCTCCATCAGGGGCTCCTGCACAGGCCAGGTTCCTTGAGGC-----AGGTATCAG-GCCCCTGCCGTCCCCCCCTCCTTTAAGGACTTAGCTAACAGTTGCTAAGCTCCAGCAGCAAGGGGGCAGCACCAACCTAGAGGCACCCAGTATCCCCCAGATACCTGCCCTTGGCTGCCCGCTGGCCTGGGTCTG--------------------------------------ACCTTGGTGAAGTGGAACTGCAAGGGATCATCTGTGGACAGCGAGACCATGAGGCCACGGGACAAGTACTCAGGGAGAGGGTTCCGGTGGTAGCTGAGGAACAGGCTGTTGTTGCTGAGCGGGGACATGGCGATGCCGATCTGAGCCAGGTAATACAGGTACTGCAGGACGGGGGCCTG
s HiC_scaffold_1 120379845 469 + 233722169 GGGCAGCCAAAGACAG--------CCTTACCTCATGAGCCATTCCACACTGTAAAACGCTGTTCCTGGCCACTTCACACATGTCACAGGTGCTCAGCTTAAAGACTTGTGCAGCAATGGCATACTCCTCCATCAGGGGCTCCTA-ACATTGTTTATTTAATGAAGCAACATAGACATAAATGCATCTA-----------------------TTAGTTAAAAAGTGATATGCAT-------------------CTTACATAGAGAAAAATGAAGTTCCTTGATT-------------TGACTGCAATTCTGGGTGGGAAACAATGGTTGAACAAAGCAAACTTATATACATGTGTACCTTGGTAAAGTGGAACTGCATGGGATCATCGGTGGACAATGAGATCATTAGCCCTTTCTGGAGGAAGTCTAAAAATGGATTTTTTGCATACTCGAGAAATAGGCTGTTGTTACTCAATGGTGACATGGCGATGGGAATCTGGGCTAAGAAATACAAGTACTGTAACACAGGActctg

a score=4531
s chr3           108075965 167 + 160039680 CTGACCTTGCGCAGGAGCAGCCCGTGGGAGATGTTCTCGGCCAGCATGAAGGCTGATACCAGGTGGTGGATGGGCCCGGCCTCCCCACAGTGCGGCCTCAGCACGAACGTGTGGAAACCTCTCTGCCTGTGGGGTATGAAGACA------GAGTCAGATCCAGAGCCTGGGCA
s HiC_scaffold_1 120381014 167 + 233722169 CTCACCTTTTTCAAATTCAGGCCATGAGAGATATTATCTGCTATCATGAATGCTATCATGAGGTGAGTGAGAGCTCCAGCTTCCCCACAGTGAGGTCGAAACAGAAACGTATTCATGCCTCGTTCCCTATGAA--ATGAAATCACTATAGGAATCA----CAGATTCTAGGCA

a score=5458
s chr3           108076351 404 + 160039680 ACGCACCTGCGCAGATGGTTCAACATAGCCATGTTAGCGAAGGTGTAGTACAGGTAGTAGGCATAGGGAGGGTTGTCCTCCTCCACCCAAGCTTCTGGGA--GGGGACTCTCCAGGTTGAAGACGTGGTTCTCTGGCTTGGACTCATCATCCACGCTATCAAAACCATCCACCTGGCGAGGA-------------------------------GCTGGTGGTCAGACCTAGAG--------CCAC------AGCTGGGGCCAA---------------CCCCAGCTATC--------------------CTGCCCTGTCCCAGCCC-----ATGCCAC----CACCGCTCACGTGCTCCAGAAAGAGGTGCAGCTCCGGGTGG--CTGGCAGGGTGCACAGTAGCCTCAAACAGGGGCAGAAAGATGTTCTCCAGCATCTCTTGGAAGTTGGCCAGCTGGCCCTTGGTGCGGTACACATCGCTGCGGGGAGACAGGA
s HiC_scaffold_1 120381936 488 + 233722169 ACTTACTTTCTTAGGCAATTGAGCACCATGATGTTTGCATACATGTAGTAAGCATAGTAAGTATAGGATGGATTCTTTTCCATTGTCCA--CTCCTGGGGCTTGggactcttagaagaaaacatgtgACCACTGTGTTTTGACTCATCATCCACACTGTCAAAGCCAGTGATCTG-TGAGGAAAACAATCCATGTAATGATTCCAGTCCAACTGCAGGGTTCTTGCCCTCAAGAAAAACTTCCATCTCTCAAGCAAGGACCAAAAGTAAAGAGATAAGCACCAAGAATTAGTCATGACCAAGTAGGGGTCTGCTCAGGAACAGCACTATCAAGGCCTCAAGGCCCTGCTTACATGCTTGAGGAAGATACTGAGGTCTGGGTGAGCCTGG--GGGTTGATGGTGGCCTCAAACACTGGCATGAAAATATTCTCCAGCATTTTTCCAAAGTGTGGAAGAAAATTCTTGGATCGGAATACATCACT----AGAGGCAAGA

a score=5497
s chr3           108077009 175 + 160039680 GACACTCACAAGAGGCGGGGCACCTGCACCAGCCAGCGGACATTGGGAGAGTGCACTTTGTGGTTCACTGCCCAGCGTGCCAGCTTGTCCCACTCATCCCTCGAACGCCCGTAGATGGACAGCCGGAGCTCTGCATTCTGGTATTTGCTCTCCTCCAAGTCTGCCATCACCTCCT
s HiC_scaffold_1 120383637 175 + 233722169 GGTACATACTAGATCCTGGGGACCTGGATCATCCACGTCATGTTGGGGCAGTAGACACGGTTACTGACAAACCAGGAGGAAAGTTTGCTCCACTCATCGGGACTGCGACCATAAATGGACAGTCGGGGCTCTGCGTGCTGGTACTTGGCATCCACCAGGTCTGCTCCTACCTCCT

a score=5746
s chr3           108077206 270 + 160039680 TACGTTCCTCCCTGTCCCGTGTCTCCCACCCCATGTCTCATCAGGGCTCTCAACCCGCCCCCTCCTGTCCCTTGAGCCCTCCTACACATGGGCTCTGGCTCAGCAGGGGAGAATGGG-------CTCCATACCTTGATGATGTGAGCAAAGTACTTCCCAGAAATCTTGTTGTCGGTTTTAATGAAGATCTCTCGGAGAACAGACTCCCCAATAGGGTTGTATTTGGCATTGAATTTGTCAAATCGATGAAAGGTATTCCTGTCCTGGAGATGGGAA
s HiC_scaffold_1 120393379 270 + 233722169 taccttctctctctccctgcttccttctctccctttctctccattcttttc------ttcctttctttcctcctgcctctcctcttCAAGAACTGTG-CAAGGCACTGTAGATTTGGTTGATTGCTCCTCACCTTGATGATAGTGGCAAAATATTCTCCATTAATATAATTGTCTGTCTTCAGGTAGAGATCCCGAAGCTCACTTGCTCCCACAGGATTGTATTTATCATTGAATTTATCAAAACGCTGGAATGTCTGGCGGCCCTGAATCAGGAAA

a score=4947
s chr3           108077549 200 + 160039680 ACCGCATGCACATCCAGCGTGTCCACACTTAAGTCGTAGGCAGTGAGGTTCATGCTCTCGAAGACTTCTCTCAGCGTCTGCTCGCGGCCCT--GTTCCACATGCACAATCT-----CCTCCAGGTGCCGCTTCATGGCCCGCTTGATGAAGCGCAGTAGATGTTTCTGGTTCATGCAGGACGAGGCGTGGATGTGTGTGTCCACCTG
s HiC_scaffold_1 120393897 200 + 233722169 ACAGCGTGAACATCCAGGGAATCAACAGTCAGGTCATATGGGTGCATCTTCAATTTATCAAAAAGCTCCTTTAAGGTCAGATTCTTGTCTTTGGTGCTATAGAC-CACTCTGTCAGCATCCATGTG-----GTATGATTT-CTTAATAAATCGCAGCAGATGTTTCTGGTTCATGCAAGCAGCTGCGTGGATGTGAGTGTCCACCTG

a score=4955
s chr3           108095428 173 + 160039680 TTCCTTGAAGGATCATTCACCAGGATGGCTACTCACCCGAAGAGTGCCTAGAGTTCAAGTCTGTCATCTATGGGAACGTGCTGCAGTCCATCCTGGCCATCATCAGAGCCATGTCCACACTAGGCATTGACTATGCAGAGCCAAGCTGTGCGGTACGTGATTCATGTTATCTG
s HiC_scaffold_1 115008601 173 + 233722169 TTTTTTGCAGAATCATTCATGAAGATGGCTATTCAGAGGAAGAATGTAAACAATATAAAGTAGTTGTCTATAGCAATACTATACAGTCCATCATTGCAATCATAAGAGCCATGGGACGACTTAAGATTGATTTTGGGGAACCTGCCAGAGCAGtaagtatttttcatttcctg

a score=5275
s chr3           108096346 166 + 160039680 CAGGATGCCGGGAGACAGCTCAACAACCTGGCTGACTCCACCGAGGAGGGGACCATGCCTCCTGAGTTGGTGGACGTCATCAGGAAGTTGTGGAAGGACGGTGGAGTTCAAGCCTGCTTTGACAGAGCTGCAGAGTTCCAGCTCAATGACTCGGCATCTTAGTAAG
s HiC_scaffold_1 115012461 166 + 233722169 CAGGATGATGCTCGGCAGTTATTTGTTTTAGCGGGCAGTGCGGAAGAAGGACTTATGACTTCAGAATTAGCAGGAGTTATTAGACGGTTATGGCGAGATGGTGGGGTGCAGGCATGCTTCAGCAGATCCAGGGAGTATCAGCTCAATGATTCTGCTTCATagtaag

a score=4579
s chr3           108096348 61 + 160039680 GGATGCCGGGAGACAGCTCAACAACCTGGCTGACTCCACCGAGGAGGGGACCATGCCTCCT
s HiC_scaffold_1 216744157 61 + 233722169 GGATTATGGGCGACAGCTCAACAACCTGGCTGACTCAACTGAGGAGGGTACCATGCCTCCT

a score=4594
s chr3           108097915 148 + 160039680 TCCTTTAGTCTTTGGAGAGTGTAAC--ATCACCGA---------TGCCACCTTCTTTTTCAGCTACCTGAACCAGCTGGACCGGATTACAGACCCTAACTACCTCCCTAACGAGCAGGACGTGCTTCGATCCAGAGTCAAGACAACAGGCATCATCGAG
s HiC_scaffold_1  52675360 158 + 233722169 TCCTTGGGGGTTTGGAGTG-GTAGCCAGTCACTGACATTCTCCTTGTGTCTTCCCTCCCTAGCTATCTGAATGACCTGGACCGTGTAGCCGACCCTTCCTACCTGCCTACGCAACAGGATGTGCTTAGAGTTCGAGTCCCCACCACAGGGATCATCGAG

a score=5043
s chr3           108097956 144 + 160039680 TCTTTTTCAGCTACCTGAACCAGCTGGACCGGATTACAGACCCTAACTACCTCCCTAACGAGCAGGACGTGCTTCGATCCAGAGTCAAGACAACAGGCATCATCGAGACCAAGTTTTCTGTTAAAGATTTGAATTTCAGGTCAG
s HiC_scaffold_1 115014368 144 + 233722169 ttttatttagttaccTAAATGATTTGGATAGAATATCACAAACCAACTACATTCCAACTCAGCAAGATGTTCTTCGGACAAGAGTGAAGACCACAGGCATTGTGGAAACACATTTTACCTTCAAAGACCTATACTTCAAGTAAG

a score=6367
s chr3           108098294 148 + 160039680 CTGTTTCTTCCCTTAGGATGTTTGATGTGGGAGGGCAGAGATCAGAGAGGAAGAAATGGATCCACTGCTTCGAGGGAGTCACCTGCATCATTTTCTGTGCGGCCCTCAGTGCCTACGACATGGTGCTGGTGGAGGATGACGAAGTGGT
s HiC_scaffold_1  52963263 148 + 233722169 CTGTTTTGTTGAGCAGGATGGTGGATGTTGGCGGCCAGCGATCAGAGCGACGGAAATGGATTCACTGCTTTGAGAGTGTCACCTCcatcattttcttggttgctctGAGTGAATATGACCAAGTCTTGGCTGAGTGTGACAATGAGGT

a score=8359
s chr3           108098294 148 + 160039680 CTGTTTCTTCCCTTAGGATGTTTGATGTGGGAGGGCAGAGATCAGAGAGGAAGAAATGGATCCACTGCTTCGAGGGAGTCACCTGCATCATTTTCTGTGCGGCCCTCAGTGCCTACGACATGGTGCTGGTGGAGGATGACGAAGTGGT
s HiC_scaffold_1 115017297 148 + 233722169 ctttctctttacttaGGATGTTTGATGTAGGTGGCCAAAGATCAGAACGAAAAAAATGGATTCACTGTTTTGAGGGAGTGACAGCCATTATCTTCTGTGTGGCCCTCAGTGATTATGACCTTGTTTTAGCTGAGGATGAGGAGATGGT

a score=6348
s chr3           108098308 145 + 160039680 AGGATGTTTGATGTGGGAGGGCAGAGATCAGAGAGGAAGAAATGGATCCACTGCTTCGAGGGAGTCACCTGCATCATTTTCTGTGCGGCCCTCAGTGCCTACGACATGGTGCTGGTGGAGGATGACGAAGTGGTGAGAGGCCGGC
s HiC_scaffold_1  52678322 145 + 233722169 AGAATGGTCGACGTAGGGGGCCAGAGGTCAGAGAGGAGAAAGTGGATACACTGCTTTGAAAACGTCACCTCCATCATGTTTCTCGTAGCGCTTAGTGAATATGACCAAGTGCTCGTGGAGTCAGACAATGAGGTAAGTGCTCTGC

a score=7638
s chr3           108099955 190 + 160039680 GCTACTGAAATGACACAATGTTTCCTCCCCAGAATCGCATGCACGAGTCTTTGCATCTGTTCAACAGCATCTGCAACCACAAGTTCTTTGCGGCTACGTCCATCGTTCTCTTTCTCAACAAGAAGGACCTCTTTGAGGAAAAAATTAAGA-AAGTCCACCTCAGTATCTGTTTTCCGGAGTATGACGGTAA
s HiC_scaffold_1 115017821 187 + 233722169 GCTACTgatctgtta---tctttttttttcagaatcgAATGCATGAAAGCATGAAACTCTTTGACAGCATTTGTAACAACAAATGGTTTACAGACACTTCAATCATTCTCTTTCTTAACAAGAAAGacctttttgaagaaaaaataaaaaggagtccA-TTAACTATCTGTTATCCCGAATATACAGGTAA

a score=4703
s chr3           108099973 176 + 160039680 TGTTTCCTCCCCAGAATCGCATGCACGAGTCTTTGCATCTGTTCAACAGCATCTGCAACCACAAGTTCTTTGCGGCTACGTCCATCGTTCTCTTTCTCAACAAGAAGGACCTCTTTGAGGAAAAAATTAAGAAAGTCCACCTCAGTATCTGTTTTCCGGAGTATGACGGTAAGTGC
s HiC_scaffold_1  52968161 176 + 233722169 tgtttttcacttagaATCGCATGGAAGAAAGCAAAGCCTTGTTTAAAACCATCATCACCTATCCTTGGTTTCTGAACTCATCTGTGATTTTGTTCTTGAACAAGAAGGACCTTTTGGAAGAGAAAATCATGTACTCCCATCTTATCAGCTATTTCCCAGAATACACAGGTAAGTGC

a score=3942
s chr3           108100053 95 + 160039680 TCCATCGTTCTCTTTCTCAACAAGAAGGACCTCTTTGAGGAAAAAATTAAGAAAGTCCACCTCAGTATCTGTTTTCCGGAGTATGACGGTAAGTG
s HiC_scaffold_1  52726204 95 + 233722169 TCAGTTATTCTGTTCTTAAATAAGAAGGATCTGCTGGAGGAGAAAATCATGTATTCCCACCTAGTGGACTACTTTCCAGAGTATGATGGTGAGTG

a score=8522
s chr3           108100617 186 + 160039680 AACTCCTATGAGGATGCCGGGAATTATATCAAGAGTCAGTTCCTTGACCTCAACATGAGGAAAGATGTCAAAGAAATCTACAGTCACATGACCTGTGCTACAGACACACAGAACGTCAAATTCGTGTTCGATGCAGTTACAGACATCATCATCAAAGAAAACCTCAAGGACTGTGGGCTCTTTTAA
s HiC_scaffold_1 115022864 186 + 233722169 AACACATATGAAGAGGCAGCTGCTTACATTCAGTGCCAGTTTGAAGATCTGAACAGAAGGAAAGATACCAAGGAGATCTATACTCACTTCACCTGTGCTACAGACACCAAGAATGTGCAGTTTGTTTTTGATGCTGTTACAGATGTCatcattaaaaacaatttaaaggaatgTGGACTTTATTGA

a score=3920
s chr3           108100686 101 + 160039680 AAAGAAATCTACAGTCACATGACCTGTGCTACAGACACACAGAACGTCAAATTCGTGTTCGATGCAGTTACAGACATCATCATCAAAGAAAACCTCAAGGA
s HiC_scaffold_1  52969378 101 + 233722169 AAAGTCATCTATTCCCACTTTACCTGTGCTACAGATACAGAGAATATCCGTTTTGTGTTTACTGCAGTCAAAGACACGATTCTACAACTAAATCTAAGGGA

a score=7142
s chr3           108109426 182 + 160039680 AAAGCCCACATTCCTTTAAGTTGTTTTTAATGATGACATCCGTAACAGCATCAAAAACAAACTGCACATTTTTGGTGTCTGTGGCACAGGTGAAGTGAGTGTAGACCTCCTTGGTATCTTTTCTTCGGTTCAGATCTTCAAACTGGCACTGAATGTAAGCAGCTGCCTCTTCGTATGTATTG
s HiC_scaffold_1 216742447 182 + 233722169 AGATCCCACAGTCCTTGAGATTTTCTTTGATGATAATATCTGTAACTGCATCAAATACAAATTTGACATTCTGTGTATCTGTAGCACATATCATGTGACTGTAGATTTCTTTGACATCTTTTCGCATATTGAGATCAAGGAACTGCCTCTTGATATAATTCCATGCATCCTCATAGGAGTTG

a score=8097
s chr3           108109426 189 + 160039680 AAAGCCCACATTCCTTTAAGTTGTTTTTAATGATGACATCCGTAACAGCATCAAAAACAAACTGCACATTTTTGGTGTCTGTGGCACAGGTGAAGTGAGTGTAGACCTCCTTGGTATCTTTTCTTCGGTTCAGATCTTCAAACTGGCACTGAATGTAAGCAGCTGCCTCTTCGTATGTATTGGAACCTG
s HiC_scaffold_1 115031971 189 + 233722169 AGAGCCCACAGTCCTTGAGATTTTCTTTGATGATAATATCTGTAACTGCATCAAATACAAATTTGACATTCTGTGTGTCTGTAGCACATGTCATGTGACTGTAGATTTCTTTGACATCTTTTCGCATATTGAGATCAAGGAACTGGCTCTTGATATAATTCCCTGCATCCTCATAGGAGTTGTTCCCTG

a score=7560
s chr3           108111930 189 + 160039680 TTACCTGTGTATTCTGGATAACAGATTGTTA-ATGGACTCCTCTTTATTTTTTCCTCAAAAAGGTCTTTCTTATTAAGAAAGAGAATGATTGAAGTGTCTGTAAACCATTTGTTGTTACAAATGCTGTCAAACAATTTCATGCTTTCATGCATTCGGTTCTG--AAAAACAAACA----TGGTTATGACAGATTAG
s HiC_scaffold_1 115032677 195 + 233722169 TTACCGTCATACTCTGGGAAACAGATACTGAGATGgactt-tcttgattttttcctCAAAAAGGTCCTTCTTGTTGAGAAAGAGGACAATGGAAGTAGCAGCAAAGAACTTGTGGTTACATATGCTGTTGAACAGATGCAAAGACTCATGCATACGATTCTAGTAAGAAGAAACACCATTGGAAACATCAGATTGG

a score=6103
s chr3           108111939 149 + 160039680 TATTCTGGATAACAGATTGTTA-ATGGACTCCTCTTTATTTTTTCCTCAAAAAGGTCTTTCTTATTAAGAAAGAGAATGATTGAAGTGTCTGTAAACCATTTGTTGTTACAAATGCTGTCAAACAATTTCATGCTTTCATGCATTCGGTT
s HiC_scaffold_1 216742638 145 + 233722169 TACTCTGGGAAACAGATACTGAGATGGACT-----TGAATTTTTCCTCAAAAAGGTCCTTCTTGCTGAGAAAGAGGACAATGGAAGTAGCAGCAAAGAACTTATGGTTACATATGCTGTTGAACAGATGCAAAGACTCATGCATACGATT

a score=5081
s chr3           108115749 152 + 160039680 GGCTATGACGTACT----TGAAGTAGAGTTCCTTGAAGGTGAAGTGGGTCTCCACAATGCCTGTAGTCTTCACTCTTGTCCGAAGAACATCTTGCTGAGTTGGAATGTAGTTGGTCTGGGATATTCTATCCAAATCATTTAGGTAGCTAAATAAAA
s HiC_scaffold_1 115034743 156 + 233722169 GGCCACCATGTACTCACCTGAAATTCAGATCTTTGACAGAAAACTTTGTTTCAATGATGCCTGTGGTTTTGACTCTAGATCGTAGCACATCTTGCTCATTAGGGAGGTAGTTAGGATCTGTAATCCGGTCCAGTTGGTTCAGGTAGCTAGACAAAA

a score=5049
s chr3           108118292 167 + 160039680 TCACTTACTATGAAGCAGAATCATTGAGCTGATATTCCCTGGACCTGCTAAAGCATGCCTGTACCCCGCCATCTCGCCATAAACGTTTAATCACGCCTGCTAGTTCTGAAGTCATGACTCCTTCTTCAGCACTCCCAGCTAAAACAAATAACTGTCGGGCATCATCC
s HiC_scaffold_1 216743032 167 + 233722169 TCAGGTAGTAAGACGCTGAGTCATTGAGCTGATACTCTGCAGCTCTATCAAAGCAGGCTTGCACACCGCCATCCTTCCATAATTTCCTGATGAATTCCACCAGCTCAGGAGGCATGGTACCCTCCTCAGTTGAGTCAGCCAGGTTGTTGAGCTGTCGCCCATAATCC

a score=5865
s chr3           108118295 169 + 160039680 CTTACTATGAAGCAGAATCATTGAGCTGATATTCCCTGGACCTGCTAAAGCATGCCTGTACCCCGCCATCTCGCCATAAACGTTTAATCACGCCTGCTAGTTCTGAAGTCATGACTCCTTCTTCAGCACTCCCAGCTAAAACAAATAACTGTCGGGCATCATCCTGAGA
s HiC_scaffold_1 115036994 169 + 233722169 CTTACTAAGACGCTGAGTCATTGAGCTGATACTCTGCAGCTCTGTCGAAGCAGGCTTGCACACCGCCATCCTTCCACAGTTTCCTgatgacttccaccagctcagGAGGCATGGTACCCTCTTCAGTTGAGTCAGCCAGGTTGTTGAGCTGTCGCCCATAATCCTGAAA

a score=4570
s chr3           108123535 166 + 160039680 ACTTACTGCTCTGGCAGATTCCCCAAAATCAATCTTCAACCGTCCCATGGCTCGTATGATTGCAATGATGGACTGAATAGTATTGCTGTAGACAACTACTTTATACTGTTTACATTCGTCCTCTGAATAGCCGTCCTCATGAATGATTCTTCAAAAAGGAGAAAAC
s HiC_scaffold_1 115037794 162 + 233722169 ACATACCGCACAGCCTGGATCAGCATAGTCAATGCCCAGTGTGGACATGGCGCGGATGATAGCCAAGATGGACTGTAACACGTTCCCGTAGATGACAGACTTGAACTCTAGACATTCTTCTGGTGAATAGCCATCCTGGTGAATGATCCTT----AAGGGGCAGAC

a score=4120
s chr3           108123580 108 + 160039680 CATGGCTCGTATGATTGCAATGATGGACTGAATAGTATTGCTGTAGACAACTACTTTATACTGTTTACATTCGTCCTCTGAATAGCCGTCCTCATGAATGATTCTTCA
s HiC_scaffold_1 216743237 107 + 233722169 CATGGCACGGATGATAGCCAAGATGGACTGTAACACATTCCCGTAGATGACAGACTTGAACTCTAGGCATTCTTCTGGTGAATAGCCATCCTGGTGAATGA-TCTTCA

a score=9155
s chr3           108192109 414 + 160039680 AGGGAAATGCCCAAGGCAGAGCGTTTTATAAGGGAGAAGAGGTTTACGTAGCTTACAGTTTTGGAGGATGGAAGT-------TGAAG----ATCCGGTTGTTCATGTCATGAGGG--CCATGGTGTGTGTCATTACAATAATGGGAGGAAATGCAGAAGGGATCACATAAAGAGATAGGGTGAAAGACAAGCTCCGTGGTCTGTTTGTCCTTTTTATAACAACTTGTTCTTGTGAGAACAAACCAGGGCCTGATGAGAACTACATTACTGTTTTCAGAGGACgatgctccc-gtgacctaacta-tctcccattagaccttatgtcttaaaggttacagcacccttcagctgtgccacgctgaggtccaagcttctaggacatgaa-tcttttgaggtacatattcaaattcCTGCCAACACAGAGTATC
s HiC_scaffold_1 113765113 414 + 233722169 AGCAAAATTCCTCAGACTAGATATTCTA---GAGGAAAAATGTTCATTCACCTCACACTTTTGGATTCTAAAAGTCCTACATTGGTGCACCATCTGTTTGTCCTTCTGGTGAGGATTCCATGGTGAATGT---------GGTGAGAGCACAGGTAGAAGAGATCACATGACAAGACAAGAAGCCAGAGGCATTCAGAGGCCAAGATTCCCCCTTTGTAACAACTTGCTTTTAGGGGATCTGAGAAGGGTCTGGTGAGAACTACACTAATCCCTTCTGAGGATGGCATTCCCAGGGACCTAACCACTCTCCAAAAAGCCCCTGCTTCTTAAAGATTCCACCACA--TCAACATGATTACACTGGCAACCAAGTTTCCAGCACATAAAGGCTCTCAAGGGAC--ACTCAAGTCACATCCAAACCACAGCATC

a score=7099
s chr3           108192113 391 + 160039680 AAATGCCCAAGGCAGAGCGTTTTATAAGGGAGAAGAGGTTTACGTAGCTTACAGTTTTGGAGGATGGAAGTTGAAGATCCGGTTGTTCATGTC-----------ATGAGGGCC--ATGGTGTGTGTCATTACAATAATGGGAGGAAATGCAGAAGGGATCACATAAAGAGATAGGGTGAAAGACAAGCTCCGTGGTCTGTTTGTCCTTTTTATAACAACTTGTTCTTGTGAGAACAAACCAGGGCCTGATGAGAACTACATTACTGTTTTCAGAGGACgatgctcccgtgacct-aactatctcccattagaccttatgtcttaaaggttacagcacccttcagctgtgccacgctgaggtccaagcttctaggacatgaatcttttgaggtacatattcaaatt
s HiC_scaffold_1 130041580 326 + 233722169 aaatgcctgaagcTGACTATTTTacaag--aaaaaaggtttatttatcgcATTGTTCTA-AGGCTAAAAGTCTAAAATCAAgctattcatttattcagcatCTGGTGAGGTCCTTATGTTAGGTGACATCACAATAACATGAGTGCCTGCAGAAGTGAT---------ACACAGGGT--------------------------------------CAACTTGATCTTGTGATAACTAACCAGAGCCACATGAGAAGTATACTAATCCTTTCAAGGGA---------AATGATCTAAACCATCTTTCACCAG-CcttacattttaaatgttctacCA--CTTCAAC----------------ACAAGTTTCAAACACATGAA-CATTCAGGGGACACACTCAAACT

a score=9657
s chr3           108441332 499 + 160039680 CAGCCAATTAAGCCAACATGGTATCTTCCATCATGGGGACCTGGTGTGCAATGGCTGCAAACAGCACCCTCCTTGGGAGTATACGCAAC-TGTGATTTGT---TGGATTGCTCTAAGAGAAAGAGAGTTATCTGATGGATATTCATGCCTCTAACCTCATGATGTCCCCTGTCTAGATTCTAGATAGGTATGCAGAGTGCAAT-GCTAAGCCTCAGGACCACACTGGACCACACTGGCTCACACTGGCCAGATCATCATGTACAACTGCAACATCTTGCAGAATAAGGCACATGTGAGGGAAACCCTACATGGGGCCAAGTTCAAGTTTCCTGCTTGCCAGAAGATCAATATCTCAAAGTAA-GGCTT--------------CAGATGGATCTGAAGACCTGGTGGCTGAGAAGCAGCTTACCCCCAGGGACTGGTCCCT-------TACAATGACAGCCTGGCACTAGTGACAGCTTCCTCTGTGCTGCTCCACTCCAATAAT--CACGTTCATTAATGCATCTCAT
s HiC_scaffold_1 165310324 494 + 233722169 CAGTCAAT-GAGCTGGC-TGGCTCCTTTGCTTGTGGGTGCCCA-CACACAATGGCTGCCGATGGCACT-TCCTCAGTGGCATATGCAGCCTGTTACTTATACAGGGACCTC------AGAAACACTGCTTCCTGATGAATGTCTGTG--TCTGACCTTGTACTGTCCGAGG-AGAGGCTGCAGACAGGCATGCAGGGTGCCTTTGGGAAGCCCTAGGGC-ACAATGG----CAAGGGCTCACATGGTACAGGTCAT---ATCCATTCACACCAAACTGCAAAACAAGGAATATGTGATCAACATGCTATGCAGGGCCAAGATCAAATTCTCTGGCTGCTGGAAGATCCAGATCTCCAAGAAGTGGGTTCACCATGTTCAGTGCAGATGAATGTGAAAACTTGGTGTCTGAGAAGCGCCTCACCCC------ATGATTCCCGGGTGAATACATC--CAGCCTGGCCCTCCTGATGGCTTCCACTGTAC--CATCACTTCCTTCATAACAAGTTCACTAA---ATCTTAT

a score=4548
s chr3           108466059 190 + 160039680 TACACAAAGGACTTTTACAAGGACATCTGCCCGGGAACTGTCCACTCAGCCTTGGACTGATGCCGCTCTCGTGTTAATCATGGTGGCCAGTGATCCCTGTTCCAATACGGCCAACACACTTTTCATTCATGTCCGCTC-AATGTCCCCTTGTCTCAGTCTTTGAATAGATCTATGATTTACTGTGGCACAT
s HiC_scaffold_1 138222712 187 + 233722169 TGCACCAAATACTTCCACAAAGACATCTGCCCAGCAGCTGTCTGTTAAACCTGAGACTGATGCTTTTCTTATG---ATTATTAAGGCCAGAGCTTAGTGTTTCAA-AAGATCTATGTAATCCTGATTTTGATCTTTAAGAATTTTCCTTTACCACAACCTCAGAACACACTTGTACTTTGTTATAGCATGT

a score=8326
s chr3           108498117 122 + 160039680 GCGTTGTATGAGCGGAG----GGTTAGCGCTCCTCTAGACAAGGACAGAAGAGGCCCTTGGGCCTAACAACACGCATACAGTTAGGGTACTGCCACCATAGTTTGTGGCGTCTAACCACTGTTTCt
s HiC_scaffold_1 193970521 125 + 233722169 GTGTTGTATGAAAGGAGAGAAGGTTAGCACTCCCCTTGACAAGGATGGAAGAGGCCCTTGGGCCTAACAACACGCATACGGTTAAGGCATTGCCACC-TACTTCGTGGCATCtaaccactgttttt

a score=4072
s chr3           108498120 84 + 160039680 TTGTATGAGCGGAGGG----TTAGCGCTCCTCTAGACAAGGACAGAAGAGGCCCTTGGGCCTAACAACACGCATACAGTTAGGGTACT
s HiC_scaffold_1  19257815 88 + 233722169 TTGCATGAAAGGAGAGAAGATTTTCACTCCCCTAGACAAGGATGGAAGTGGTTCTTGGGCTTGACAACACTCATGCTGCTAAGACATT

a score=5674
s chr3           108562718 223 + 160039680 TCCAGTGATTCATGACCAAGAAACAAAAG-AAAGCCATCCCGTTTCCTCCAACTTATTTAGGTGACAACTGGTAGTGAAATCAGGTACAGTTCCAAGAGAAAACACT---TGGGAACCAGGCTATAATGCGAAGCAATTGCACGTAAGGTGGCGCACGT-------------------------GTGTATACTACAGCAGGGTCACTGT-ATCTTACCATACCAAGCTGAAAACGTCACCACTGTCAGGATAG
s HiC_scaffold_1 118732663 250 + 233722169 TCAAGTGATTCCTGGCCAGGACGCAAAGGCAGAATCGTCTCATTCCT--CAGTAGATTTGGATGAAGACTGGTAGTAAAATCAGGTACAACTCCAAGAGGAGACACTGGAGGAGGACCAAGTTGGGAAATGTAAGAATTGCACATGAGCTACAGTATATTTACTCTTTTTGAGATCACAAGATGATGTCTTCTTTATCGTGGTCAAGATGATATCACCATATCAAGCTTTAAAAAT-ACTATtgacgggctgg

a score=10842
s chr3           108607699 272 + 160039680 TGGCTGGGTAACTGCAGTCTCCCTCTCA-CTTGCTGCAG----GGTTCCCTTTCAGA--CACAGATGCT-ATCCAAA--TCTTCCTGCTGTCCTTGTTCTTAACTGT-GTGCCTTGCTGAATTGAAGCCATGGGATTTGAAACAAGTTCAGTATCATTTTCTTCAAGGATTAACTCAT-CACCTGGGCTTGAGAAACTGAACCAGCAGCATCTGAACTCATCCAAACCTTGAGGATGTATTTTTCATCCAAGAAAGTTCAGATTTCAACCAGAGACCCATTCTc
s HiC_scaffold_1  58354857 283 + 233722169 TGGCTGGATAACTCTAGGATCTTAATTATCTGGCTGCCAAACTGTTTGCTTTTCAGAAACACAGACACCCATCCAAAAATTTTCTTAC-ATCCTTATTTTTGGCTGTTGTGGCTTGCTGAATCAAAGCAGCTGAATTTGAAACAAGTTCAATGTCATTTCCTTCAAATATTGGTTCAAACTTTCGGGCTTGAGATGCTGAGCTAGCAGCATCTGCCCTCATACGAACCTGGCAAATGCATCTTTCACCCAAGAAGGTCCAGATTGTGACAAAAGACCCACCATC

a score=7566
s chr3           108673816 131 + 160039680 ATGGCTCTGTGTTTGTGCCTCAGGTAAATCAAATGCCCAGAGCACTTCAGGGCCCTTGTTGCCAGAGTGAAATCTAAGGTCAATGTGTCTCTGTCTCAAAACGTCTCTCTTACATGCACGCACCTTGTCAT
s HiC_scaffold_1 114424143 131 + 233722169 ATGCTCTTGTGCCTCTGTGTCTGGTAAATCAAATGCCCGGAGCACTTCAGGGCTCTTGTTGCCACTCTGAAATCTCAAGTCAACATCTCTCTCCCTCAAAACATCTCTTCTACACTCACGAGTCTTGTCAT

a score=4082
s chr3           108679674 141 + 160039680 AACTCTCTGCTCATCCATTCTTTTAGCTTGAGAGCGTAAGATGAGGCTAAAGAAGTCCTCATCCGGGACAGTCGGCCCCTTAGTGGCAGCAGAT--GGAGGAGCACATCTTTGATCATCTAATCTTGACCCCTAAAGATGGAG
s HiC_scaffold_1 194752550 134 + 233722169 AACGCGCTGCTCATCCATGCGCTTGGCCTGCACCCTCTGAATGAGGCTGAAGAAGTCCTCATCCGGCATGGTGGGGCCCC--GGGGCAGTACGTCGGGTGGTGGGCACCGCTGGTCGTC-------GATCCTGGAAGACTGAG

a score=6773
s chr3           108681977 236 + 160039680 cCCAGGCCACTCCACAGAATGCACTTACCTGGCACTTTACAAGGATGTCGAAGAAGTCTTCATCAGGCTCTTTCTTGTCATTTGTCATCAGGCGCTCAAGTACAGATGGACT--GTTGCCTTTTGTCAGGCGGAGCCCTGGCAAATTACTGAAACTGGCCCTCTGGTCATCCAGACGGCGGCTCTGTGAGCTAGCAAGAAGATCTAAGAACTCATCTGTGTTGGGGGACAC---CACAGAG
s HiC_scaffold_1 194753659 228 + 233722169 CCCTGGCCTCCCGACTGCAGGCCC--ACCTGGTATTTGATGAGCATGTTGAAAAACTCGTCCCCTGGCTCCT-------GGGGGTCCCCATCCCCTCGG----AGGTGGCCCACGTTGTTGTGGGTGATGCGCAGGCCAGGCAGGCTGCCCACACTGGCCCGCTGGTCATCCAGCCTGCGGCTCTGGGAGCTGGCAATGAGATCGAAGAACTCCTCGGTCTGCGGGGACGCTGTCACAgag

a score=3972
s chr3           108697525 113 + 160039680 ACCTCTCTTGAAATTTCCAAGTGCTTTTCAGCAAAATGCATTGCTTGGTCATGATTTCCCAGAGCTGTGTATGCGTTTCCTAAGCTCCAACACGCTCTTCCTTCACCAATCCT
s HiC_scaffold_1 194763332 113 + 233722169 ACCTCCTGGGAGATCTGCAGGTGTTTCTTGGCGAAGGTCAGGGCCTGCTCTGGGCTCCCCATGGACACGTATGTGTTCCCCAGACTCCAGCATGCTCGGCCCTCACCCACTCT

a score=7072
s chr3           108698912 164 + 160039680 CTCACCGATCCTTGAGCTCTTGGGCGATTGCTAAGTGCTTTAGGTGGTAATCGATGGCCTTCTCGTAGTCCTGAAGCAAAGTGTATGTATTCCCAAGACTGTAGCAAGACTGAGCTTCCACGGCTCTGTCTTTAAGCTGCCGAGCCAGCAGCAGTGTCTTCCTG
s HiC_scaffold_1 194764296 164 + 233722169 CCCACCTGTCGGCCAGCTCCTGGGCGATGAGCAGGTGCCTCAGGTGGAACTCAGCCGCGCGCTCGTAGTCCCGCAGCAGTGTGTAGGTGTTGCCCAGGCTGTAGCAGGCCTGTGCCTCCACTGCCTGGTCCCGCAGCTGTCGCGAAAGCTGCAGCGTCTTCCTG

a score=8729
s chr3           108700661 351 + 160039680 ACTTGTAGTATTCGGAAGCAGTTTCGAATTCACCCAGGAATATGTATGCATTTCCTAGGTTGCTGTACGCTCTTCTCTCAGCCGCCTTATCTCCGAACTCCTTTGCAATTAGGAGACGCTGAA-----AGAGAAAACTTTTATCAGAGA----------------------------------------------TACACAAAACTT----AAGACCATCCCGGTCA-----------TGGCCCTCACCCCTAATAGA-----GGAGATGACCAGACTC--------------------------CCAGGCCTTCTGATTACCTGCTCGTGAGCTATAACTGCATCCCTGAAGTTGCCGAGGAGGTAGTGTGTGTTGCCAAGGTTCCCAAAGGCTCGCCCCTGTGCTGCTCGGTCACCTAGAGCAGTTACTAAGGACAGGTTTTCCCT
s HiC_scaffold_1 194764970 448 + 233722169 ACTTGTAGTACTCCGCTGCCACATCGAAGCATCCCAGGAAGACGTGTGCGTTGCCAAGGTTGCTGTAGGCCCTCCTCTCGGCGGCCTTGTCCCCAAACTCCTTAGCGATGGCAAGGCGCTGCAGAGCCAGACAGGGCTGAGGTCACAGAGCGGCCCTGGCCCCGACTGCCAGCCCTGTGACTGGGTGTCAGGGGTCAGACAGGAGTCGCAGAATGCAGTGCAGGTGACGCAGGGTAGGCGCCCCTCAGCCCCGTGGGGCCACTGGAGACAGCGAGGCCCCACCCCAGTGCAGCCCACTGGACGCGCCAGCCCGCGTGCGCACCTCCTTGTGGAAGCTCGTGGCCTCTGTGAAGTTGCCCAGGAGGTAGTGGGTGTTGCCCAGGTTGCCGTAGGCCCGGCCCTGCGCTGCTCGGTCTCCCAGCTCCTTCACCAGGCACAGGTTCCTCCT

a score=7195
s chr3           108702395 146 + 160039680 TACCTTGTCATTAAGCTCTCTGGAGATATCCAGGTGTCGCTGGCAACACACTATCGCTTCATCAAAATTCCCAAGCACCTTTAAGGTGTTTCCGAGATTGCCGCTGGCTTTAGCTTCCCCAAGTTGGTCTCCAATAGTCCTGGAAA
s HiC_scaffold_1 194766349 146 + 233722169 TACCTTGTCCCCCTGCTCCTGGGCAATGTCCAGGTGCCGCTGGCAGCAGACCACAGCCTCATCAAATCTGCCCAGGACCTTGAGTGTGTTGCCCAGGTTCCCACTGGCCTTGGCCTCCCCCATGCGGTCGCCAATAGTCCTGGAGA

a score=10716
s chr3           108702860 234 + 160039680 TTACCGTGCAAGAGTTAAGTCATGGTGGTGGTATTCTAACGCTTTGGCGTAGTCATGCAAGTAGAAGTAAGCATTGCCCAGTTGGCTGTAAATAGCACTGAGTGTTTTGAGGTCTTCAGTTCCAACTTGAACTGCGGCTTCAAAAAATGACACGCCAGCGCGGCAGTCCCCTGATTTACATAGACGTTCTCCTTCCAAGGCCAGCTCAAGGCAAGAAGCTTCCATTCTGCAGAA
s HiC_scaffold_1 194767153 234 + 233722169 TCACCGGGCCAGCAGCAAGTCATGCCGGTGGAACTGCAGGGCGCGGCCATACTCCTTCAGGTAGAAGTAGGCATTGCCCAGCTGGCTGTAGATGGCACTCAGCGTCTTCAGGTCCTCTGTGCCCACCTGCACTGCCGCCTCAAAGAAGGCCACGCCTGCCTTGAAGTCGCCCGCCTTGCACAACCGCTCGCCCTCCAGAGCCAGCTCCAGACATGAGGCCTCCATCCTGGGGAA

a score=7007
s chr3           108768483 505 + 160039680 AGTGAGATCAAGTCTTCAGTGTGAG--CAGAAATACCCACGATGGGCAATGTTCAACTGAAGAGCATGTTGCAGG-------TGCTGAGGGGT----ACGCCTCCTTAGGGCAATGCTcatcagaatcacctgggacactttaaagcatggctcctacc-gaactagcccctcctagcaactctggcatggtaggcggggtg--agtcgtgttcgttattttcaaaa-ctgcaaggatgttgatgctCTCT--GCAGTAAAGAACCAGCAATG---------------GCAGATTTTCATGGT---GAGGGA-------------GCCCAGTCCCTTGATGCAGGCCTCAGTAGCTAACCAATGGCTTGGCAT-AGCTAGCATCCACTCTCACTGGAATTATGAACCCACCACGGCCTCCTACCCATCCT-------------CAAGAAGCCC-CACCCACCAAGGAGTGGGCATCAGGAAGCACAGTGGGGATGGTATGCCACCATCTTTGTAAAGGCCTGCTTTCCTCCGGCACTGTTAAGATTCTCCTGGGCCACAAAGCACACACA
s HiC_scaffold_1 114319316 535 + 233722169 AGAGGGAGCTGGTCTACAGCAGGAGAATAAGAATCCCCTCTCTGGGCGGTGCTCCA----AGAGCCCAT---AGGACCACCCTCCTGTGATGTTACTGTGATTCCTCACCACAGTGCTTAT--GAATCCTCTGGAAAGATTT-------GGTTCTTACCAGAACTG--TGCTCCTGGAGATGCTTACATA-TAGGTGGAGCAGAAGtc-tgtatattattttaaaattccccAGGGACTTTGATTTTTCCCTCGCATAAATAAACCAATGCTAAAAAAACGACTGCTAGCAGATCTGTAAAgttgggagagaagctgggcttGGTGCCCGGGTCTGAGATATATGCTCCCTTCACTGGCCAGTG--TTTCCATGAGCTG---------CTGCCGGGTGTTAT----CCAAGACCACCTCCCACCCATCCTGGAATTGCAGCAGCAGAAAGCCCTCACCAATCCAGGAGTCGGCAGCAGAAGGCACAGCTTGGATTCGGTGCCACCATCTCTGCATGCTGCTGCTTTCCCGATGCACCGCTGGGGTCCTCCTGTgccacaaaacacacaca

a score=25229
s chr3           108881826 487 + 160039680 ATGTTGGGCCGATGAAGGGAGGAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCACGGAACCAAGGTGGCTATGGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAATTACATACAGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCCGAGAAGTGACAACAGGGAAGCTACGGGTTATAAAAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGCTTTAGACATTACTCATGTGTGTGGGCAAAAACTCC---AGGACTGTATTTGTGACTAACTATATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAAGG-TTTTACTGTAG---ACCTTTTTCACCCAGGCTGCTGACTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAATGTGTCttt
s HiC_scaffold_1 100111424 476 + 233722169 ATTTTGGATCTGTGAAGAGAGCAAACATTGAAAGCAGAACCTCTGGCCTCTATGGTGATACAGGCCAATACTTTGCCAAACCATAAAACCAAGATGGTTATAG-TGGTTCCAGCAACAGCAGAAGCTATGGCAGTGACAGAATATTTTAGTTACT----GCCAGGAAACAAAGTTTAGCA----CAGCAAGTCAAAG------TAACAGAGAAGCTTCAGGTTACAACAGATTTCTGAATTCAGCCAAGCACAGTGGTGG---GGCTAAGACGCTGCAAAATAGACATGCTATGAACAATACTCAAGTATGGGCAAAAGAAATTGCTGAGGACTGTATTTGTGAATAACTGTGTAACAGGTTATTTTAGTTTCTATTCTGTGGAAAGTGTAAAGTATTCTAACAAAGGATTTTTAATGTAGATTATTTTTTACACCAAGGAAGTTAATTGGTAAATGTAACAGTATAATTGTGACACTGAATAAATGTGTCTTT

a score=45793
s chr3           108881826 886 + 160039680 ATGTTGGGCCGATGAAGGGAGGAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCACGGAACCAAGGTGGCTATGGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAATTACATACAGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCCGAGAAGTGACAACAGGGAAGCTACGGGTTATAAAAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGCTTTAGACATTACTCATGTGTGTGGGCAAAAACTCCAGGACTGTATTTGTGACTAACTATATAACAGGTTATTTTAG-TTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAAGGTTTTACTGTAGACCTTTTT--CACCCAGGCTGCTGACTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAATGTGTCttttttttttttttttttttAATGTGCTGTGTAAAGTTAGTCTATTCTGAAGCCATCTTGGTAAACTTGCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGGTGCCAAGTTCCATTTGGAATTTATTTATGGTTGCTTGGGTGGAGAAGCTGCTGTCTTCAAAAACCTTGACGTCGTTAAACTGCCAGTTACTATTGTAACTTTTAATGAGTTTCACCATTGAAAGGGTCATCCAAGCAAGGTCACAATTTGGTTAT--AAAATGGTTGTTGGCACACCCTATGCAATATCAAAACTAAATAACGGTA-TCAGATAAAATAACAGATGGGAATGAAAGTTATGT---ATCCATTATCATGTGTACTCAATAAACGATTTAATTCTCTTGGAAAAAAATAATAATAA
s HiC_scaffold_1 138523739 860 + 233722169 ATTTTGGACCCTTGAAAGGAGGAATCTTTGGAGGTAGAAGCTCTGGGTGCTTCGGTGGTGGAGGCCAATACTTTATCAAACCATGAAATCAAGGTGATGATGG-TGATTCCAGCAGCAGCAAAAACTGT--CAGTGGCAGAAGGTTTTAA----ATACTTCCAGGAAACAGAGCTTGGCAGGAGAGGAGAGCCAGAGAAATGACA---GGGAAGCTACAGATTACAACACATTTGTGAACTCAGTTAAGCACAGTGATG-CATGGCCTTGCTGCTACAAAGAACATGTGTTTTAAACAATACTCGTGTACATTCA-AAAAACTTGAGGCCTGTGTTTGTGACTCATTGTGTAACCGGTTACTTTAGATTTCTGTTCTGTGGAAAGTGTTACGCATTCCAACAAAGGATTTTAATGTAGACTTTTTTTGCACCCATACTATTGATTGCTCACTGCAATTGTCTGAACATGAAGCTGCATAAATGTGT--------------TTTGTTTAATGTGCTGTGTAAAGTTAGTCTCCTCTGAAGCCATCTTGTTAAACCTCTCCAACAGTGTGAAGTGAGAGTTCCTTCAGGGTGATGCCAGGttccatttaaaatttctttacaaTTGCTTGGGTAATGAAGCCATTGTCTTCAGAAACTTTT-TATAGCTGAACTGACAGTTACTGTTATGACCTC---TGGATTTGGCCACTGAAAATGTCACCCAAGC-AGTCAATTACTTGGTTATAAAAAATGATTGTTGGCACATTCTAT---ATATCTAAGTTGAATAATGGTACCCCAATTCAATGATAGATGGGTTTG-AAGCTGTGTATCATCCATTATCATGTGTaatcaataaataattaaattctcttgaaacaaaaaaaccacaa

a score=22394
s chr3           108881830 481 + 160039680 TGGGCCGATGAAGGGAGGAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCACGGAACCAAGGTGGCTATGGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAATTACATACAGCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCCGAGAAGTGACAACAGGGAAGCTACGGGTTATAAAAGATTTGTGAACTCAGCCAAGCACAGTGGTGGCAGGGCCTAGCTGCTACAAAGAAGACATGCTTTAGACATTACTCATGTGTGTGGGCAAAAACTCCAGGACTGTATTTGTGACTAACTATATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTGTAAAGCATTCCAACAAAAGGTTTTACTGTAGACCTTTTTC--ACCCAGGCTGCTGACTGCTAAATGTAATAGTCTGATCATGACGCTGAATAAATGTGTCt
s HiC_scaffold_1  21081393 459 + 233722169 TGAGCTCATGAAGAGAGGAGCATCTGGAGGCAGAAGCTCCGCACCCTGTGTTGGCAGAGGCCAATATTTTACCAAACCACGAAATCAAGGTGGCAAT-GGTAGCTCCAGCAATAACAAGAGCGTTAGCAGAGGCAGAAGGT----GTTAAATACTGCT-GGCAGCAAAGCTCAGC---AGAAGAGAGCTTGAGAAGTG---AGAGAGAAGCCACAGCTTACAACAGACAGCTGAACTCGACCAGGCATAGTGGTGGCAGAGCCTTGCTGCT---AAGAAGACATGTTGTAGACAAGGCTCATGAGTATGGACAGGACACTCACGA-------TATGACTATCTGCAGAACAGGTTATTTTAGTTTCTGCTC--TGGAAAGTGTAAAGCATTCCAACAATGGGTTTCCATGCAGACTGTTTTCGTACCTGTGTTGTTGATTGCTACATGTAACAGTCTTATCATGACActaaataaatgtcttt

a score=4993
s chr3           108979674 125 + 160039680 GCATACCTTCTGCACTGGAGTCGAGGCTGAAGTCCTGACTCTGTAGGATTTTCTCCACGATGTCATCAGCATCCACTCTGGTGTCATCAACCCGCTTCAGCTGCGACTCAACAGAATCTTGCTTC
s HiC_scaffold_1 187072425 125 + 233722169 GCTTACCCTCAGTGTTGCTGCCATCCGTGAAGTCCTGGCTCTGCACAATCTTCTCCACAATGTCATCCGCGTCGATCCGAGTGTCATCTACCCAGGTCGGGTGGCTCTCCACAGAGTCCTTCTTC

a score=7212
s chr3           108992622 136 + 160039680 TACTTTAAGGATGGAATTGTCCTGTCTTGTATTTTTGGTATCATAGCCTTCCAGTAAACAGCGGCGGGTGGTATTTCCTGATCCAGCAAACTCTGCCAGGTTTAGATCTGCAAAGCCCAGCTATGAAAAGAAAGAG
s HiC_scaffold_1 187077027 136 + 233722169 TACCTTGAGGATGGAGTTGTCCTGTCGAGTATTCTTTGTGTCATACCCCTCAAGCAGGCAGCAGCGCACCGTGGAGCCTGAGCCTGCAAACTCAGCCAGGTTCAGGTCGGCAAAGCCCAGCTGTGAGGGGAAGAGG

a score=6988
s chr3           109003297 132 + 160039680 ACCTTCCGTACAGACACTCTGTAGATACAAGGATCCAGGATGCCGGTGGAGGCGCTGGCGCTCATTTTGCACATAAACGAGAACTTCTTTCTCCAGTGAACACAATTTGCTTGCACCACCTCCCTGAATAGG
s HiC_scaffold_1 187079430 132 + 233722169 ACCTTGCGCACAGACACACGGAAAACACAGGGGTCCAGCAGGCCCGTGGCTGGGTTGGCGCTCATCTTACACACAAAGGTGAACCTCTTCCGCCAGCGGACACAGTTCTCCTGCACCTCCTCCCTGCAGAGG

a score=6257
s chr3           109027134 186 + 160039680 AGCCCCTG--CCTGCGGGCAGCCGCGGGAGAGCAGCTCCCGAGGCTCCTTACCTGGAGGACTCGGCGGTGAAGCTGCCGCCGTCCAGCAGCCGCATCTTGCAGAAGAGGACCCCGTTGACGAAGGGCACCGAGGAGAGCTCCTCGAGCTCGAAGTCCACCTTAAACTTAAACTTCTTCTTCTTCATCA
s HiC_scaffold_1 187098498 176 + 233722169 AGCCCCTTACCCTGCAGGCAGT-----------AAATGTCCCGGCTCCT-ACcttgaagacaaactgacaaaatCTCCACCATCTAGCAGCCGGACCTTGCAGAAAAGGACCCCATTCACGAAGGGGACCGCAGTCAGCTCCTCCAGGGTAAAAGTGGTttggaatttgaatttctttttcttcatca

a score=6603
s chr3           109085724 141 + 160039680 TCTTGTAGGAGATTTTTATGGATGCAGATTCCAATGCTGATTCAGGACTGGATTTTGAAGAATTTGTGCAGTACCTTCAAGACCATGAGAAGAAAATGAAATTGGCCTTCAAGAGTCTGGACAAAAATGATGATGGTGTGT
s HiC_scaffold_1 187183701 141 + 233722169 TTTTTTAGAAAATTGTTCAGGCTGGTGACAAGGACCTCGATGGGCAGCTGGACTTTGAAGAGTTTGTGCACTACCTTCAAGACCATGAGAAGAAGCTGAGGCTGGTGTTCAAGAGTCTGGACAAGAAGAACGATGGTGAGT

a score=5011
s chr3           109098564 136 + 160039680 TTTCATTTCAGCATGGATTTTGACGGGTCGATGACAGTAGACTGGGATGAATGGAGAGATTTCTTTTTCTTCCACCCTGCAAAAAATATCACTGACATTGTTCGTTTCTGGAAGCATTCTACTGTAAGGTTATTCT
s HiC_scaffold_1 187185287 136 + 233722169 TTCTCTTGCAGCATGGATAAGAATGGCACGATGACCATTGACTGGAACGAGTGGCGGGACTATCACCTCCTGCACCCCGTGGAGAACATCCCCGAGATCATCCTGTACTGGAAGCATTCCACGGTAAGGGTGCCCT

a score=5728
s chr3           109112009 178 + 160039680 AGGTGATAAAGACCAGGCTGAATTTAAGTAAAACTGGAGAGTATTCTGGGCTTGTTGATTGTGTCAGGAAACTTCTGAAGAGAGAGGGTATTCAGGCCTTCAGCAAAGGTTATGTTCCCAACCTGCTGAGCATCATACCGTACGCAGGCTTAGATCTCACCATCTTCGAGGTGAGTTC
s HiC_scaffold_1 187188595 178 + 233722169 AGGTTCTGAAGACTCGAATGGCCCTGCGGAAGACGGGCCAGTACTCAGGCATGTTGGACTGTGCCCGCAGGATCCTGGCCAAGGAAGGGGTGGCTGCCTTCTACAAAGGCTATGTCCCCAATATGCTGGGGATCATCCCTTATGCAGGCATCGATCTGGCAGTCTACGAGGTGAGGTC

a score=5822
s chr3           109112757 167 + 160039680 CTTCTCCACCAGCTTCTGAAGAATCACTGGCTAGAACACTATGCAGGAAACTCGGTGAATCCTGGAATAGCAATTGTGCTGGGTTGTAGCACAGTGTCACACACTTGTGGCCAGTTAGCCAGTTTTCCACTGATTCTTGTTAGAACTCGCATGCAGGCT---GGTGAGTt
s HiC_scaffold_1 187189017 170 + 233722169 CCTCTCCCCTAGACGCTCAAGAACACCTGGCTGCAGCGCTATGCGGTGAACAGCGCCGACCCTGGTGTGTTCGTGCTTCTGGCCTGTGGCACCATCTCCAGCACCTGTGGCCAGCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCGCAAGGTGAGTT

a score=6802
s chr3           109136171 173 + 160039680 ACAATAAAATATCTTTAATTGTTTTTTTTTTTTCCTGTAGAAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTTTGGACAAGAATAATGACGGTGTGT
s HiC_scaffold_1 187183679 163 + 233722169 ACAACACAAAACCTC-ACTTGTGTTTTTT---------AGAAAATTGTTCAGGCTGGTGACAAGGACCTCGATGGGCAGCTGGACTTTGAAGAGTTTGTGCACTACCTTCAAGACCATGAGAAGAAGCTGAGGCTGGTGTTCAAGAGTCTGGACAAGAAGAACGATGGTGAGT

a score=5060
s chr3           109154986 135 + 160039680 CTTTCAGCATCGACTCTGATGGGACGATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTATTTAACCCTGTGACAGACATTGAGGAAATTATCCGTTTCTGGAAACACTCTACTGTAAGTCTGCTTTATG
s HiC_scaffold_1 187185291 135 + 233722169 CTTGCAGCATGGATAAGAATGGCACGATGACCATTGACTGGAACGAGTGGCGGGACTATCACCTCCTGCACCCCGTGGAGAACATCCCCGAGATCATCCTGTACTGGAAGCATTCCACGGTAAGGGTGCCCTCTG

a score=6639
s chr3           109156850 168 + 160039680 TTGACATAGGGGATAGTTTAACTATTCCAGATGAATTCACAGAAGATGAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCGGGCGCCGTCTCTAGAACGAGCACCGCTCCTTTGGATCGCCTCAAGGTCATGATGCAGGTGAGCAGCGTGC
s HiC_scaffold_1 187186499 168 + 233722169 TTGATGTGGGTGAGAACCTGACAGTCCCCGATGAGTTCACCGTGGAAGAGAGGCAGACGGGCATGTGGTGGCGACATCTGGTGGCAGGAGGCGGGGCGGGGGCTGTGTCAAGGACCTGCACGGCCCCCCTGGACAGGCTCAAGGTGCTCATGCAGGTGAGTGGCAGGC

a score=7576
s chr3           109161209 180 + 160039680 AATCTAGGTTTTGAAAACCCGGCTAGCTGTAGCCAAAACTGGACAATACTCCGGAATATACGGTTGTGCCAAGAAGATTTTGAAACACGAAGGCTTTGGGGCTTTTTACAAAGGCTACATTCCCAATTTACTAGGCATCATTCCTTACGCAGGCATTGATCTCGCTGTGTACGAGGTGAG
s HiC_scaffold_1 187188590 180 + 233722169 AATGCAGGTTCTGAAGACTCGAATGGCCCTGCGGAAGACGGGCCAGTACTCAGGCATGTTGGACTGTGCCCGCAGGATCCTGGCCAAGGAAGGGGTGGCTGCCTTCTACAAAGGCTATGTCCCCAATATGCTGGGGATCATCCCTTATGCAGGCATCGATCTGGCAGTCTACGAGGTGAG

a score=7751
s chr3           109163433 160 + 160039680 TGGCTGGATAACTTTGCCAAAGACTCGGTCAACCCTGGCGTGATGGTGCTGCTGAGCTGTGGAGCCCTATCCAGCACCTGTGGGCAGCTGGCCAGCTACCCCCTGGCTTTGGTGAGAACTCGCATGCAGGCTCAAGGTGAGTTTGGGTTCCAGGATGGCC
s HiC_scaffold_1 187189044 159 + 233722169 TGGCTGCAGCGCTATGCGGTGAACAGCGCCGACCCTGGTGTGTTCGTGCTTCTGGCCTGTGGCACCATCTCCAGCACCTGTGGCCAGCTGGCCAGCTACCCACTGGCCCTGGTCAGGACCCGGATGCAGGCGCAAGGTGAG-TTGAGTCCTGGGTTAGTC

a score=7481
s chr3           109166323 174 + 160039680 AGCCACGGTAGAAGGAGCCCCGCAGCTGAGCATGGTTGGCCTTTTTCAGCGAATCGTCTCCAAAGAAGGAGTGTCAGGACTTTACAGAGGCATCACCCCAAACTTCATGAAAGTGCTCCCGGCCGTGGGCATCAGCTATGTGGTGTATGAAAATATGAAGCAGACCCTGGGAGT
s HiC_scaffold_1 187189273 174 + 233722169 AGCCTCCATCGAGGGTGCCCCCGAGGTGACCATGAGCAGCCTCTTTAAGCACATCCTGCGGACAGAGGGTGCCTTCGGGCTGTACCGGGGGCTGGCCCCCAACTTCATGAAGGTGATCCCAGCCGTGAGCATCAGCTACGTGGTGTATGAGAACCTGAAGATCACCCTGGGCGT

a score=4628
s chr3           109341115 133 + 160039680 CTCGGCGCAGGTGTTCGACCTGGCGCAGACCCTTCGCGATGGAGTCCTGCTCTGCCAGCTGCTCAACAACCTGCGGCCACACTCCATCAATCTGAAGGAGATCAACCTGAGGCCCCAGATGTCCCAGGTATGG
s HiC_scaffold_1 194063670 132 + 233722169 CTCGACTAAGGTCCTAGACAAAGCCCAG-TCGACCGCGATGGAATCCTGCTGTGCTAGGTTCTGCATTACCTGTCCCCCGGCTCTATCGAAATCAAGGACATCAACTTCCGGCCGCAGATGTCCCAGGTGAGG

a score=6342
s chr3           109423969 140 + 160039680 CTGCTGTTTTCTGTTCTGCAGTTTCTCTGTTTGAAGAACATCCGGACATTCCTGGCCGCCTGCTGCGATACCTTTGGAATGAGGAAAAGTGAACTTTTTGAGGCATTTGACCTATTTGATGTTCGAGACTTTGGAAAGGT
s HiC_scaffold_1 194091373 140 + 233722169 CTCCTCCTTGCCTCTCTCTAGTTCCTGTGTCTGAAGAACATCCGTACCTTCCTCAAAGTCTGCCACGATAAGTTTGGCCTGAGGAACAGCGAGCTGTTCGACCCCTTCGACCTCTTCGATGTCCGTGACTTCGGGAAGGT

a score=4593
s chr3           109515981 104 + 160039680 CCTTAGGAATGTTCAAAAAGAGCCAATAACGGGAAGTTTACTCTGCGCGATTTGCTGGTCGTTCCAATGCAGCGCGTGCTGAAGTATCACCTCCTCCTTCAGGT
s HiC_scaffold_1 194165977 104 + 233722169 CCCCAGGAGTGCACGCTAAAGGTccaggatggcaagttcaagctgCAGGACCTGCTGGTGGTGCCCATGCAGCGTGTGCTGAAGTACCACCTGCTGCTCAAGGT

a score=5576
s chr3           109527380 174 + 160039680 TGCTGTCAGTCACCCACACTCTCTCTTTTACAGGCATATCTTCTTATTCGACTTGGCAGTGATTGTCTGTAAAAGGAAAGGCGATAACTACGAGATGAAGGAAATAATAGATCTCCAGCAGTACAAGATAGCCAACAACCCTACCACTGACAAAGAGAATAAAAAGGTGACTAC
s HiC_scaffold_1 194169527 171 + 233722169 TGCTGATGGCTGGGCACACTCCCCGCC---CAGGTACCTGTTCCTGTTTGACAAGGTAGTCATCGTGTGCAAGAGGAAGGGCTACAGCTACGAGCTGAAGGAGGTCATCGAGCTGCTGTTCCACAAGATGACCGATGACCCCATGCACAACAAGGACATCAAGAAGGTGAGCAC

a score=5148
s chr3           109528269 121 + 160039680 CACAGTGGTCTTATGGCTTCTACCTCATCCATACCCAAGGACAAAATGGGTTAGAATTTTATTGCAAAACAAAAGATTTAAAGAAAAAATGGCTGGAACAGTTTGAAATGGCTCTGTGAGT
s HiC_scaffold_1 194171465 121 + 233722169 CGCAGTGGTCCTACGGCTTCTATCTGATCCACCTGCAAGGGAAGCAGGGCTTCCAGTTCTTCTGCAAGACGGAGGACATGAAGCGGCGGTGGATGGAGCAGTTCGAGATGGCCATGTGAGT

a score=4221
s chr3           109562739 115 + 160039680 CAGATCCAACATAAGGCCAGACTATGCAGACTCCAATTTCCATGATTTCAAGATGCACACCTTCACTCGGGTGACATCCTGCAGGGTCTGCCAGATGCTCCTGAGGTAAGCTTTC
s HiC_scaffold_1 194172106 115 + 233722169 CAGGTCCAACATTAGGCCGGACAAAGCCAATGCCAACCACCACAGCTTCCAGATGTACACATTCGACAAGACCACCAGCTGCAAGGCCTGCAGGATGTTTCTCCGGTGGGCCTCC

a score=3651
s chr3           109664296 88 + 160039680 CTTAAAGGAACTTGTGGAGTACTACAAGCACCATTCTCTCAAAGAAGGGTTCAGGACCTTAGATACAACGCTACAGTTTCCATACAAG
s HiC_scaffold_1 194179317 88 + 233722169 CCTGCAGGAGCTGGTGGAGTACTACCAGAGCCACTCACTCAAGGAGAGCTTCAAACAGCTGGACACCACGCTCAAGTACCCCTACAAG

a score=5879
s chr3           109682794 169 + 160039680 TTTCTTTACAGTGTTGAGTCCCAAAGTACTGGGTATTGCCATCGCTCGGTACGACTTCTGTGCAAGAGATATGCGGGAGCTCTCCCTATTGAAAGGAGACATGGTGAAGATTTACACGAAGATGAGTGCAAAT---GGCTGGTGGAGAGGTGAAGTAAATGGCAGGGTGAGT
s HiC_scaffold_1 194180518 172 + 233722169 TCTCCCTGCAGTGTTCACACCCCGAGTCATCGGAACAGCAGTGGCCAGGTACAACTTCGCTGCGCGGGACATGCGGGAGCTGTCGCTTCGGGAGGGCGACGTGGTGAAGATCCACAGCCGCATCGGTGGGGACCAGGGCTGGTGGAAGGGCGAGACCAACGGCCGGGTGAGT

a score=3626
s chr3           110317185 127 + 160039680 AGTCGAAGAATGGGTAGTGGAGTCTGTTTTGATTATGGGGGCTAAAGCAGTTCCAGAGCTGGGTCATACGGCACTAGCCTTGGGAAAGGGGTTGTGAGGCTCTGCCCAGGACTAGGTTCTACCTTGG
s HiC_scaffold_1 168937845 119 + 233722169 AATTAGACAATGTGTGGTGGAGGATGTCAGTTCTCTGGC--------CATTCCCAAGGTTCAGTCTGAAAGCACTGGCCCTGTGGAAGGAGTTGAAAGACTTTGCCCAGCACTGGCTTTCACTTTGG

a score=44120
s chr3           110603060 1328 + 160039680 GCCCATTAAACTTATACTATGCTCAAAGCACAGATCCTATTACAATTTTACACCAAAGCAGAAGTCTCACTATCTTCTTAAAAGAACTTTAAAATGAAATGCATTCATAAA-ATAAAACTACTGGTTGGTCTTTCTTGTTAATTAAGCTTTGTAGTG--TCTTAGCTGCCATTTTGTGCATGTGAAATTTGTTGCTCTTCCAGAGCTAAATTCACTTAGGCAAATAGATGACTTTGGTGTTGTATATTTCTACACACTAATAGAGTCATTTGCATGCTAAAGAAGTGGGAATTTTACTCTTCTGTGGCCACCAAGGATTAATTTAATGAATTAAAGAGGGTTTGGATTGTCTTCCAGGAGACAGAAGGTTAAAAGGTACATTTTACTAAATATTTAAAATCTTTAACCTCTGTGATATAGAGCTCCACTATTTAAGAAATGATAGAAACTTAAAGCATAATCACATCTTTCTT--AAAGTTTCCTCTTTCAAGTTCAGAAGAATTGTTCATGATTCTTCGGAATAATAAGCAATATTTTCAGATAATGTTCTAATTCTGATAAGGAAGAATTTCTCATTATGTCTGT----TTCCCTGTGAGTTCTGTTTTATTAGACAGGTGCACAGCGTGGGGAA-GTTTCCCATGTGTGCAGGAAGTACTAA---CGTCATATGTCTTTCTTCAGTGACATATGGGGCAATATTAGAACTCACAGTGTCTGCTGCTAAATGAACAGCTTTAATGTTTCTATTTAATTATTAACTTGGTCACTCGTGGAAAATTAAAAGCCATCTTTTTACTTGTGCTCTTGGAAGATCTGTATCAATTTATTGGTTGACATCTGGTGT--TATCACCCAAAGCTTTCAGGCACAGAAGAAGAAAGTAACATAGTAGATGGTTTTGGAAGCAATGGCAATGCATATAAAAACAATTATTAGTTCTAGTAGATACAATTCTTTTTCTACAATAAATGTGTTGCACATAATATATCAAATATACAGCACAATGGAAGCAT--CTTTGTAAATGTGAAATGATCCTTTTAAAAA----ATTGAAATGGTCTCT---GAAGAAGGAGAAGAATCAGTTGAGATGGAAAAATGTATT---AAACTAA-TTCACATCTTTGA--TACGGGTAGA-AATATG------TGAAATCCCACCTGTGAT------------AAGTTTAAGTAGTATATATTTGAATCATTAAAGTTCATTCAGTTTACAATGTATGTGTTTATTATTCCGTTTGGCATTTAGAATAAATTTAAAATATTGTTTGAGACTTGAGCTAAACTTAATTTTTCATATTTACATTATTTCTAAATTTCTTGGC--ATTATAAATATACACACGTCAATACAT
s HiC_scaffold_1 112517626 1317 + 233722169 GTCCATTAAACTAGTAAGATGTCTAAAGTATACAATTCATTTCAGTTTTATGCCAAAAGACAAGCTTCAAAATCtttccaaaacaatttttaaacagctttcacttttaaagacaaaaataatgctTGGCATTTCTGTCAGGTTAAATTTTAcaattgtttttaatctttattgcTTGTATAAGAA--------TACATTCAGAACAAAATTTACTTAGATGAGTAAATCACTTTTGTGCTGTATATTTCCACACATTAATAGCATCATTTGCAtactaaagaaatgaaattcttaTTCTGCTGTGGCCACTAAGGATTAATTTAATGAACTGAATA--GTTTAGATTGCCttctgagacagagaaggtt-aaAGGTACATTTtgctaaatatttaaaatctttaaccTTTGTAGTATACATctccatgatttaaaaaatgatagaaacttaAAGTATAATTGCATCTTGtttgaaaattttccttttttaagttcAGACGTAATGTACAAGACTCTTTGAATTAATATACAACATTTTCAGATACTGTTATATTTCTGCTAGTGAAGAATTTCTAAACATATTTATCAGATTTCCAATAATTTCTGCTTTGTTAAACAGGCACA---CGAGAAGAATGTTTTACATGTGCTCAGGAAGCATTAAAACTGTTATATGCCCCTCTTCAATAACATATTTGGccatattaaaa--tattgtttccaTTCCTAAATGAACCATTTTTGTGTTTCTACTTAATTACTAATTTAGTCATTTGTGAAAAACTAATA-CTatcttttaatttcaatttttacaGCTTCTATATCAATTTATTAGTTGACATCTGGCATTCTCTCACCACAAACTGTTGTTCACAGGAG------TTCGTGCACT-GAAGATTTGGGAAGCAGCGGTTA-ACATATAGCATCAAATCATTTCTGTATTAGACATAA-TCTCTTCCtggaataaatatattctgaaaaatatattACACAACCAAGAAAATCAAGGCATAACTTTGAATATCTGAAGTGGTAGTCTAATAAAGTTGATTGAAATGACCTCttacaaggaaaaaggaaaatcagttTAAGTGGGAAATTGTCTTGTAAAGTtagttttatattcttcacttaAATGCAGAGAATTTGGGGTTCTGGGGTTTCACATATaatggtaaaatataaaaattaaagaaatatattttagaagtatgaaatataatcCATCTTGTAatgtttccatttaatatttcatttagcatttagAAAAAAGT--------------AGACC--------Attctatttttc-------catt-------gatttcttATCCAATTATAAATAGGTACATGTTAACATAT

a score=6829
s chr3           111111326 582 + 160039680 tcagagctaaacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtcc-----ctcaacagaggaatgg---------------atacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaaca---caatcacaaaaggcctcacataatat
s HiC_scaffold_1 121178214 507 + 233722169 tcaaattttaatagaaattccTCTGTAAAAGATTTGCAAATAGTCaagaagcacatgaaaaga-tatcCAACATCATTCATCATTAAGGTAATGCAAAGCAAAACTATGGTGTGATATCACTTCGTATCTGCTAGGATGACTGCAATC-AAAATACAAGT----ATTGAGATTGAACAGTAAATGGCAAAAATGGAAC-----------------------------------------------------TCATATATTTCTCTTGAGAATT--------TAC----------TCCTACAATTCCATATCTAGGTAAATGTTCA-AGAAAACTCAAAACAGCATCACAACCATTTGTGCACAAATGTTTATAGTAGAATCATTTGTAATAGTTCAAAg-tggaaataactcaaatgtctTATCATTTGATGAAGGAACTGTAGAAAGGTAGACTCATATAAAGGATATGTAATATATACATC----AATATTAATCAGTAATAACAAATAATACCATTGC---------------ATAGATGGACCTGAAAAACACtacattatctaaaataaaaattcagacacTAAAGGCCAtatattgtat

a score=16166
s chr3           111111326 582 + 160039680 tcagagctaaacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaaggcctcacataatat
s HiC_scaffold_1 204091642 557 + 233722169 tctgaaatgaatagatatttctcaaataaaaagtac-aaacagcaaatgaatatatgaaaaaa-tgcttaacatcactggtcatttgagcattgcaaattaaaacaacagtgagattc----tcactcca----------------tcaagaaatcaaccaacaacaaatgctagtgaCACTGTGGTGAAC-AGGAATTCTTCTCCATTACTGTTGGGAGTATAAAATGGTACAACTACTATGAAGGTCAGTATGAGAATTCTTCAAGAATCTAGAACCAGAGGTACCATTAGACTGAGCTATTCCt-ttttaggtatcttccccaaaaaagttaaaagcactac-agtgatatatgcatatccatATTTACAACagtacaactcataatagctaaatcttggaaacagcctatatgaccattaaccaatgaatgaataaagaaaatgtgatatttatatacaatggagtactactctgcaatGAAGAAGGATGAATTtcaatcatttgtaggaaaatggatgcactttgagatcataatttaaagtgaaataggttgaaaacacaagtttaaatatcatat

a score=7090
s chr3           111111328 268 + 160039680 agagctaaacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCA-TCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAA
s HiC_scaffold_1 202029589 256 + 233722169 agactTGAATACACGTATCTAAAATAAGATATGC-GAATGGCCAAGaagtacatgaaaaga-tgctcaataatCATTAGTCATTGGAGAAATCTAAATCAAAACCCCAATGAAGTACCACGTCATACCAAAGAGGGTGACTATAATCAGAAATACAG---------AATGCTAGAGAAAATTTGGATAAATTAAAAGA--CCCAAATTGCTGGCAGGTATATAAAATGGTACAATCCCTGTGGAAAATGATTTGATGgttcttaaaaaa

a score=11853
s chr3           111111328 582 + 160039680 agagctaaacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG----ACAGCAGAG---GCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagt--tccaagtggtaag-----aaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaac-agaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaaggcctcacataatatgt
s HiC_scaffold_1 108778698 582 + 233722169 aaaaataaacagacaaatcacag--aagaaatac-aaacgttCAACAACTACATGTAAAAATTTTTCAACATCTCCTACcgttagagaaatacaaatttaaacaatgctga--ttttattttactctgcaaagaatggcaatcattaagaattaagaaataaCACAATAAAAATTGCTGACATGGCTCTGGTGAAAAATGAGCCCTCCTGCATTGTTGATAGGAATGCAAACTAATACAATCCTTATGAAAATCA-TATGGAGATTTCTCCAAGaatc-aaattagaaattccaAATGACCCAGC--TCACCCTACTAtgtatcttcctcaaagagtttaTTTAAGTCATCATACTACAGCATTACATGCATACCCGTGTttgtagcagcataatttgtaatagcttaaTCCTGGAAGCTGCCTGTATACTCATCAACAAGATGACTAGAT--AAACAATCTGGTGCCTATGTATAATGAAATACCATGTAACtacaaagaatgacaaatttgaggcatttgCAGACAAATGGATGCACTAGGAATAGAAAATGTTGGATGAAATAAATCACGCACAAG----CTTAAATAGTACAT

a score=7390
s chr3           111111329 249 + 160039680 gagctaaacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
s HiC_scaffold_1 199101013 243 + 233722169 GATTTAAACAGATACGTCTAA---AAAGAAGTAGAAGTGACCAATAAGCATAT---AAAAAGTTTCAATACACTTAGATATTAGGGAAGTATAAACCAAAACTACCTTGAGATTCTGTCTTAAGCCAGTCAGAATGTTTAACGTTGAGaatgtaagaaataataaatccTGATGACAATGCAGGGGAAATGAAATACTTCTACACAGATGGTGAGGAAGTAAAGTAGctcagccactgtgaaaatcagt

a score=12410
s chr3           111111331 596 + 160039680 gctaaacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA---------GGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTC---AGAAAATTGGAAATAGTACTACCTgaggatcc---cgcaatacctctcctgggaatatatccagaagaagttccaagtggta----agaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaaccca---aatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattc-ctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaaggcctcacataatatgtactcaatgataagtgga
s HiC_scaffold_1 132314005 581 + 233722169 GCTGAACAGACACTattca---aaagaagtacaaatgaccaaaaagtatacgaaaaaa-tgttcaatatctatAACCATCAGA------CAAATCAAAACTGCATTGACAGTCCATCTCACCCTAGTCAGAACAGTTACTatcaagaatattaaaaacagtaaataaatgatGAGAATACAAGGGGAAGGGGGAGAAGGAATTCTTCTGCATTGCTGGCGGGCGTGTAAGTTAGTACAGTCACTATGAGAATCAGTATGCAGGTTCCTCCAAAGCAACAAAAAAGTAGACCTACC-----ATCCAATAGCTATACTGTTCTTTGGCATACA-CTTGAAGGAATTAAGGTCAGCATACTATAGGGATACTAAGATACCCATGTTTATTGTGCCACAATTT---ATAACCAAGA----TAAAGAATCAACTGGGtacccattaacag----atgaataaagaaaatgag--------atatattGGAGTATTATTCATTTGT---AAAGAACAGATTTTGATCATTCACGGGAAAAATGGATGGATCTGGAGaccattatgttaaatgaaacaagCCAAATTCAAAAAGGCAAATACCACATTTCTTCCCTAATATGTTGA

a score=6038
s chr3           111111332 274 + 160039680 ctaaacaaagaattc-tcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCT--CCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATA
s HiC_scaffold_1 111370038 268 + 233722169 CTGAACAAACACTTCACCAGGGaaacaatacataa-----aaaacaGATTCATAAAAAGATTTCATCATCTTTACACATCACATAAATGTAAGTCAACAACATCATGATATCTCACCTTACTTCAGTCAAAATGTATATCACTAAGAACACAGAAGTCAACAAATCCTGGAAACCATGTGGGGAAA----AGCAGTCCTTGTAAATTTTGTTGGGAATATAAAATAGTACAATcagtataaaaatcaaaatggaaagtccttaaattgttaaaaata

a score=5173
s chr3           111111335 174 + 160039680 aacaaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTG
s HiC_scaffold_1  77485760 166 + 233722169 AATAGACATTTCttgg--aagaagtac-aaatggc--aaaaataT---GAAGAATTGTTCAACATCCCTGACCATTAGAAAAGTGCAAATTAGAATAATATTGAGATTCCATCGTATCTCAGAAAGAATGTCTgtcttcaagaaatcaaacagtaacaaatactggtgaggctG

a score=8336
s chr3           111111338 258 + 160039680 aaagaattctcagctaaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAA
s HiC_scaffold_1 156159356 248 + 233722169 AATggattctcagatgaagaaatagaaacggccaataaagatatgaaaaaa-tgctcagcgtTGCTGCTTATgtgaggaatgcaaattaaagtagcaaagagattccatctcaatttAGAAAGAATGACCA---taaggaaatcaaccaataagatatTCTGGAAAAGCTGC------AGGGGAGCATTCCTTCATTTTCAGTGAGAATGTAAACTTGTACAACCACTAGGGAAATCAGTAttgggattcctcaaaaa

a score=4929
s chr3           111111340 484 + 160039680 agaattctcagctaagga---ataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCT--CAGAAAATTGGAAATAGT---------------ACTACCTgaggatcccgcaatacctct------cctgggaatatatccagaagaagttccaagtggtaagaaagacacaggcttcactatgttcatagcagccttatttaaaatagc-cagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaa-aagaatgaatt
s HiC_scaffold_1  25293180 424 + 233722169 AGAATTCTTACCAAAGAACACATACGGAAAGGAAATAAAGCATAAGGAAAGG-TACTCTGCATCATAAAGCATCAGAGAAAGGCAAA------------------------------------------------------------GTAACAGCAAATTCTGGGAAGGATTTGGAAAAACAGTCACTTTCTTTCCCAGGTCGTGGAAATACAAATTTCTATAGCCACTGTGGTAAACAGTGTGGTGGTTTTTTCCccaaacttaaatatatttttacaatatAATCCACTAActgtgtatctttttatttttccatagaaaCTGAAAACATGTTCACACTAAAATctgc------------acaca--------catatgtacagTGGTTTTATT---AGTGTctcaaaacttggaagcaactt--ATGTCAATTAGCAGACGAATGGATAAACAAAC--TAGTATTTCCAAATAGTAGAATATTTTCCagtgctaaaataaaaatgaact

a score=8809
s chr3           111111353 556 + 160039680 aaggaatac---cgaatggctgagaagcaccTGAAAAA---AATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCT-------------CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagacacaggcttcac---tatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagg----------gcatcatcctgagtgaggtaacacaatcacaaaaggcctcaca-taatatg
s HiC_scaffold_1 222092866 568 + 233722169 AAGATATACACACGTGTGGCAAATAAGTATATAGAAAATGGGAAGTTGCACATTATTA-tcattggtgat-tgcaaatttaAATATTACTGCTGCTACTGCTACTACTAATGCTACAAATCTATTACAGTGGTTAAAATCTGAAAAACTGACAACATCAAATGCTGACATGAACTTG-AGCAACAGGAACTCTC----ATTACTGATAGGAGTGCAAAATGGTGTAGCCACTTTGAAAGACAGTTTGGTGGTTTCTCACAAAGCTCAAAACAGTCTCGCTATATGATCTGGCAATTACTCTTCTAGGTATTCACCCA-AACAAATTGAAATCTATCTCTACACCAAAACTTGCATACAAATGTTTATAACAAATTTATTCATGCTTGCCA-AAACTTTAAGCAACCAAGAAGTCTTTCAA-AGATGAATGAGTAAACACACTGTGGTCCATCCCTGCAATGGAATAGGATTTTGTGA-TAGGAAGAACAGAGCTATCAGCT----------GTGAACAGACCTAGAGGAAACTTAAACACATGTTATTCAGTGAAAGAAGATAGTCTAAAAATGCTACATACTAAAATG

a score=9823
s chr3           111111353 571 + 160039680 aaggaataccgaatggctgagaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCC------ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGA-AATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatac-----aatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaaggcc-----tcacataatatgtactcaatgataagt
s HiC_scaffold_1  21341203 497 + 233722169 aaagaagtataaatggtcaataagtacatgaacaag-tgtt-ggcatttttggccattaaagaaatgcaaatcaaaatagcACCAAGATTCCCTCTGAACCTCA--------AAAAAAGTTA---TCAAGAAACCAAATTACAACAAATACTGGCAAGGTTGTAGAGAAGAAGAAATGCTGCTACATTGCTAGTGaggatgtaaactagtacaactattgTAGAAATTCGtacagaggttcctcaaaaaactaaataacagaGATTCCATGTAACCCAGGTAAACCTCTT-----------------------------------------CATATGCTTTCTCATGTATGTTGCATCACAATTCATAATA--CTGAATCTTAGAAGTGGCTTATAGTGGCTTA---------------------------TTCATTTACATAGGTAAATGAA--------TGGGTATGAAGAAGACTGAATTcaggtcatttgtaggaaaatcaaTTCATCCtaagaccataatgctaagtgaagtaagccAGACACAAGAGGTTAAATagcacatagtttctcttatatgagaaat

a score=5895
s chr3           111111353 237 + 160039680 aaggaataccgaatggctgagaagca-ccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATG-----------------------GCTAAGAT----------------------CAAAAA-----------------------------TTCAGGTGACAGCAG-------------------------AGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACA----ACCACTCTGGAAATCAGTCTGGCAGTTCCT
s HiC_scaffold_1 217088884 337 + 233722169 AAGCAGTACAAATTGGCCAATAGATAGTTTGCAAGAAATGCTCA---TTTTCAGCCACTAGGGAAATGTAAATCTAAACAACTCTGGGATTCCATCTTAGCACAGTCAGGATGGGGTCATGAACTATGCAGAAAGTGTTAACATGTAATCATAATCACATACATAACAAAAACACTGGTTTTTGAAAATGATTAGTCCTGGTTTAAGTAAaggcagtaaaaaaaaatacaaaaagcgaTTAATGTTAGCAAGAATGTGAAAATAGAGGaac-cttctacattgttggtgggaatgtaaactagtacataCTACCATTGTGGAAATTAGTATGAATATTCct

a score=9420
s chr3           111111373 481 + 160039680 gaagcaccTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccg------caatacctctcctgggaatatat-ccagaagaagttccaagtggtaag-----aaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccc--tcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacct
s HiC_scaffold_1  62148156 466 + 233722169 GAATAATATGTAAGAAGAGTTTCACATCAGTGGCATTTAGAGAAATGTGAATGAAAGCAACACTGAGGTACCATGCTTCTCCAGAAAGAAGGGCCATCGTCAAGAAATCAGGTAACAACAATCGCTGGGGCAGCTGTGGGGGTGGAG--ACTCTTCTGCACTGGCGGTGGGAGAATGAAC-TACaagaccactgtggaaatcagtatggaggctcctcaaaaca----aaac-------cccagaaatttcatttgaccagTTATCCTGCTAGGTATCTTTCCCAAAAGAAA--CGAAATCATCATATTGCAATGATACGtacatacccatatttatagcagcacaatttgtaatagcta-atgtTGGA---AGCCCTGATACACTGATCAACA----AATGGATAACGAAAATGGGATAC--TCACACCATGGAGTACTCCTCTGCCAT---GAAGGGTAAACCCGAGGCATTTGTctgtaaatggatgcacct

a score=8023
s chr3           111111380 396 + 160039680 cTGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAA----TAGTACTACCTg------------aggat---------------------cccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagacacaggctt-cactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtg
s HiC_scaffold_1  29853497 414 + 233722169 CTAAGAAGACATTTCAATATCAGTAGTCATCAG----ATGCAAATCAAAGCCACTGTAAAACATTACCTCAAAGCACTAAGAATAGTTATTACCAAAAAGTCTAAAAATGGTAAGTACTGTCAAGGATGTGGAGCAAAGGGAATACTTGCaaactgttggtggaaatgtaaattaatgcaGTCATCCTAGCAAAGAAAATGGAGATTCCTCacacaattaaaaaagagaaatactacaTGATATGTAACTATATGATATGTAACTATGTACTATATGATCTGTAACCCCActtctgggtatagatcta-------ttttga-----aACAGAGACACATTCTCACTCTTTGTATATCACAGCAGT-TTCAGAATAGCCAAGAA-TGGAAACTACTTGAGTGTTTGTCAACTGA--CATGGAAAAAGAACATGTG

a score=14873
s chr3           111111381 499 + 160039680 TGAAAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTC--AGAAAATTGGAAAT---AGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtg-gtaagaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtg-------ttacatttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1   8983169 502 + 233722169 taagaaaaatgctCAATAGCACTGGTTCTTccagagatacaaattaaaacaatgctgagatacCATTTCACTCTAGAAATAATGACcattttcaagaaatcaaccaataacaaatgttggtgggactGTGGGAGAACAAGAACACTTCTCCCCTGTTGGTGCAAGTGGAAACTGGTGAAACCACTCTGAAAATCAGTATGTAGATTCCtcgaaaaaaactaaaactacaagtTCCATTTGA----TCAGCTATTCCTCTTGTTagtatctttctaaaagaa-ttaaaagcacatCACACTGATATATGCatgcctatgtttatagcaacacagtttttaatagctaaatcttggaaacagaccCTATGCCCATCAACACATGACTGGATATAG---ATGTGGGgctcttttttttaatacaatggagtactactcattcataaagaaagataaacttgagacatttatagctaaatggatataGTTTGAGACCATTCtcc--agtgaaataa

a score=12339
s chr3           111111384 566 + 160039680 AAAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGA-TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGG-AGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttcca---agtggtaagaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgtta--------------------------catttatacaatggagtactactcagttattaaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaag-------gcctcacataatatgtactcaatgataagtggatattagcgtagaaacttagcata
s HiC_scaffold_1  85018773 587 + 233722169 aagaaatgttcaacattat-gaccaatagagaaatgaaaattaaaatagtgcTAAGAACCCCACCATACTTCAGAAAGAATgcaaatcataaagaaatcaaTTAATTACAAATGCAGATAAGACTGTGGTGGAAAAGGGAACACTCCTTCATCGCTGGTGGGAACGTAAACTAATACAATCATTCTGGagttcagtgtggagatttctcaaagaaccgAAACTGGAAATTCCATGTGATCTAGTGAACCCTCTTGTAGGTGTCTTTCC--CAAGAGTTTAAGACATTGACTATAGTGACACATGGATACCAATGCTTATAGGGACA--ATTTACACTAGATA-AATTTGGAAAACAACATGTAATCTGTCAATAGATGAtttggtaaagaaaatgtggtatctatctatctatctatctatctatctatctatcta--gaaatattactctgctat---aaagaatga------gacatttttagaaaaatagatgTACCTGGAAAGTATAACATcgagtgaaataaactagacacatAAGTTTGAATGCCATATGGTATATTTGAGTAACtacaaataaagagaataataaaaaatgagtaTA

a score=14369
s chr3           111111385 480 + 160039680 AAAAATGTTCAGCATCCTTAATCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAA-------TTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatat--ccagaagaagttccaagtggta----agaaagacacaggcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttatt-------aaaaagaatgaatttatgaaattcctaggcaaatggatggacctggagggcatca
s HiC_scaffold_1 207705297 489 + 233722169 aaaaatgtttaatatcattgattatttgagaaatgcaaattaaaaccatactgagattccatctcaccccagaaagaatgagcatcagcaagaaatcaaccagtaacaaatactgATGGAGCTATGGGGAAAAACGGACACTTCTCCAGTGTTGGTAGTAGTGTAGACTGGTTCCACCACTGTGGATCTCAGTGTGAAAGCTCCTCAAAAGATGTAGGTTTGGAGAG--------CTCATTCTCTCCATACACCCCTGTTtgtgatattttctcagaa-aaattgaaaacatcatagcacagagataaatgtacatccatgtttatagcagcatagtttgtgaTAGGTAACTCtttgaaacagcccaaatgtccctCAACcaaggaatggtt--aaaaaatgtggtatttgtaagcactggagtactgctcagctatttttttaaaaaatagataaatttgaggcttttgtaggtaaatggacacaagtgaaatgaatca

a score=9386
s chr3           111111406 423 + 160039680 TCATTAGGGAAATGCAAATCAAAACAGCCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagacacag--gcttcactatgttcatagcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatga
s HiC_scaffold_1 158244585 404 + 233722169 tcatcagataaatagaaatcaaaacaacATTATGGTATTACCTTATCCCAGTTAGAATGATTATTACCAAAACAGCTAATGATAACACCTACTGCTGAAGATGTGGAGAGAAGTGAAGCTGTACACACTGTCGATCGGCAGGTAGGTTAGTGTAGCCATTCTGGAAACCAGTTGGGAAa--ccattaaaaattacaaatttatttaCCATGCAATCCATTAGTCTCGGTCCATGGTATGTATTTAGAGGAAAT----------------GATACCATTATATCAAGATGTTTGT-GCAATTCTATTCATAATAGTCAGtaagtgaaaacaacctaag-gGCCACCATCTTatgaatagacaaagaaaatatggtacaTGCACACACTAATACActgttcagcta-taaaaagaatgaaattctga

a score=9399
s chr3           111111415 494 + 160039680 AAATGCAAATCAAAACAGCCCTGAGATTCCACCTCA---CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGAAATAGTACTACCTgaggatcccgcaatacctctcctgggaatatatccagaagaagttccaagtggtaagaaagaca-caggcttca---ctatgttcat----agcagccttatttaaaatagccagaagctggaaagaacccaaatgtccctcaacagaggaatggatacagaaaatgtgttacatttatacaatggagtactactcagttattaaaaagaatgaatttatg--aaatt--cctaggcaaatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaaaaggcctcacataatatg
s HiC_scaffold_1 104368694 491 + 233722169 aaaggcatattaaaacaacactgagattccattttagcCCCCCAA--AGAATGGTTATAGTCAAGAAATCAAATCACAATAAATGCTCACTAGGTTGAGGAGCAAAACAAACTTTTCTACATTGTTGTTGAGAATATAAGGTAGTGCAACCAGTGTTGGAACCAGTAGGGAGATTgctgaaaacattaaaacaagaaattccatttcaccTAGGTATTTCCCATCtcagtatcttcctgaaagaatt-------------aaagacatcatattacagtgatatgtgcatTTAGAGCAGCACAACTCAAAACTGCTAAATGTTGAAAGCAAGTTACATATTCTTCAGCAGATAAAGGACTACTT--TTTGCACTATTTAAATACAGTtaaatactactctgcca-taaaaaggacaGATTTGAGTCAGATTGGACTAAGAAAACAGATAGACCTTCACATAACAatattaagtgagataaatcagacatacaaggtTAAACattgcatg

a score=5224
s chr3           111111457 128 + 160039680 TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAGGCTGGCAAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAG
s HiC_scaffold_1 119492612 127 + 233722169 TTAGAATGAACAAAATCTAGAGCACTGATGATATCAACAGCTGCTAAGGATTTAGAGTAACAGGAACTCTCCTTCATGGCTGGTAGGAATGCAAAACAGCACAACCACTTTGTAAGACAAT-Tggcag

a score=84576
s chr3           111321054 1832 + 160039680 CCCTTTTTCTTTTT--TAAAG---AAGATAGAACTTAATCTTTATTTACAGGACATGACAGGGTGTGATATTCCATAAAGAAATAAG------TTCAGAGGACA-GCTTCATAGAGTATGTATAGTTTATAACTGTT------------------------------------------------------------------------------------------------------------------------CAAGTATAGTTTCTTTTGTAAAAAGTGCTACGATAAAAAAAAAACCACATTTAAAAACA---------GTTCTTAGTAGAGAAACAGTAAGACAAATTTATGA-GAACACAGAATAGCACAGCACATAACTAACAACTTTGTGCCTTAGCTGGA-AATTAGAAGTTAAAGGTCCAGGGAGCTCCATCGTGAACTTGGAAGGTGGAGCCTTCAGGGGGAGTTTCTGGCACCACATTTTGACCTTCCTCTTCCTCCACTGAGAAGCACTTCTCAATTAAGTTTAATGAGGCCTTGTGTACAGACTCATTTTCATGGCTTTGTAGTGCCTCAATTTTATCCAAGCCTCTACACTCTTCAAACATTATACTAAGTTTTTCTGCCTCACCTAGTTTCTCTGCAACCTGAAAGATATTTGAAATGGCATCAAGAATAACCTGAATAATCTTGGTATCTTCTGCACTCAGGAGGTTCACCAAAGTTTCTGTTATCCCACAATGAATGAGATAGACAATCTGTTTAACAGTCCCACCGCTGGTAAAGTTGGTTATAGCCCA--CGGCCTACTTCTGTGTCTTAAAGTCTGCCTTAGAGAGGACACCAACAAGAAAGGGGACTAGGCCGTGATTCACAACTTTCTGTATCTGGTCCTGGC-GTCAGCTGTAATGTTCGACATTGTCCTTGTGGCCTCCTT-TGAATATTAGTTTGGGGGTTTGTTAGCAGGCTGGGAAAGACTGCAAGTGTTCCTGCATCGATCACTTTCTGAGTCTGTTCATCTGTTCCAGTGACAATATTCCCTATGGCTCTTAGTGCGGGAGTCACAATGGGCAATTCCTTAGCTCTTAGGAGCTTCACAAGTTGGGGAACAGCTCCTTTTTTCACAACCATCACAATGCGCTCATTTGGACCATCAGTCAGGTAGGAAACGGCTCAGCAGGAATCTGCTAATACTTCTGGTTCATTGTG--GTACCA-ATGAACAAAAGTAGGAAGAATCTGCTCAACACCATTTAAGGGGGATGCAGGATTCTTGCTTCGACAAAGGTTTGAAAGCGTCCAGGTAAGATTACGTTAGTAACCACATACCAAGGATGACAGATCAGGAACTGCAAGAAGTGCCAATAGTGGCTCAATTGCACCATGTTTGATAACTAAGTCTCGGAAA-----------GCCTGCAATGTTTCCAAGAGCCCATACAGCTTGCTTGCTGATGTGAGCATGGGGAGATGCCAAGAGAGAAATAAATGCTGGGATAGCACCTCCATCCACCACAGCTTTGGTCTGTTCAGGTGTTCCAGAAGCAGTATTGGTGAGTGCCCAAGCAGACTCAAACTGAATGGGACAACAATCAGTTTTGCCCAAGAAGGACACAAACTTT--------------------------------GGGATCGTTTGTCTCTAGAAAGCAGTTTCAGAGCAGCTTGAGTAGCTCGGAGCTGGCTTTTCAAAT---TGTTACTGTTTATGCCTTTAACATTGTCTTCAACAGACCAATTTACAGTACCCTGGTTGTTTCGGTTTTCCTGTAGCGGAGAAGTAGCGTCATCAGGAAATGAGCTGACATTTCTCCTCATCA---TCTGGTCA-CTATCTTAGCTTTCCTTAGTTTTACATTAACTTCTACTCGGTGGCGACACATTTCTGTGCTGTCTTTCCCCTGGTACTTGAATCTTTTAAGTCAGGCAGCTGGTAATTTAGCATTCTCATTCGTGGACATGGTTGCAGGAACAAGGAGGAAAGCTGT
s HiC_scaffold_1  61648085 1969 + 233722169 ccttttttctttttggtaaagcAAAGGGTGGAATTTAATCTTTGCTTATAGGACACTGCAAAATGTAAAATTccacacagaaataaaaactccTTGAGAGGATAAGCTTCATACACTATGTACAGTTTGAaactgttggggctgggggtttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcaatccccggtaccgataaaaatgaaaaagacaaaaaaaaaaaaaaaaaagaaactgttcaagTACAGTTT-GGTTGTAAGAAG-GCTGCAATgacaaa-----cacatttaaaaaaaaaaaaaagagttcttagTAGAGAAA----GAGACAAACTTATACCAAACACAGTA---CACAACAAA-AACTGATGCCT-----CCTCAGCTGTATGCCTAGAGGTTAAAGGCACCAGGA-CTCTGTCCTGAACTTAGAAAGTGTAGCCTTCAGAGATAGTTTCTGGCTCAGTGTTTTGATCTTCTTCCTCCTTTACTGGGAAATACTTCTCAATCAAGTTTAATGAGGCCTTTTACACAGACTCATTTTCATGGTCCTGTAGAGATTCCATCTCGTCCAAGCCTCTGGATTCTTTGATCACTACACTAAACT---CAGTTTCATCTATTTTCTCAGCAGCCTGAAAGATACTT------------AGAACAA---GaataatttttgtatcttttgcaGTTAAGAGGTTCAACA-----------------CAATGAACAAGGTATACAATCTGGTCAACTGTCCCATCACCCGTATAGTTGGTCACGGCCCAAACAGCTTTCTGTTGTGTCTTAAAGTCTGCCTTGGAGAGGACACTGACAAGGAACGGGACTGACACATGATTTACAATGTGCTGTATCTGGTCCTGCCAGCCAGCTATGATGTTTGACAT-GTCCATGTAGCTTCCTTCTGAGTATTAGTTTTGGGGTGAATGAGCAGGCTGGGAAAGACAGCAAGTGCTCCTGCATCCATTACAATCTGAGGCTGTTCATCTTTTCCAGTGACATTATTCCCTATGGCTCTTAGCGTGGGAGTCAGAATGGATAATTCTGTTGATCCTAGAAGCTTCACCCGATGGGACACAATTCCCAGTTTTACAACCATTGCAATGCGTTCATTTGGACCATCAGTAAGGTAAGACACAGCCCAGCAGGTATCTGCTAATACTTCAAGATCACTGTAACGTAGAAGATGAACCAAGCTAGGAAGAACATGGTCAACAGCATCTAACAGGGGTGCAGGATTCTTGTTACAGCAAAGGTTTG-AAGCATCCAGGTGAGATCATGTAAGTAACCATCTGCTAAAGATGACATATCTGAAACTGCATAAAGACCCAAGAATATGTCAATTCCACCATATTTGATAACCAAGTCTCAGAAAACTGAACCATCACCTGCAATGTTTCCTAGAGCCCAGACAGCCTGTTCACTAATGTGAGCGTGGGGAGATGCcaagagagaaatgagtgctgAGATAGCACCTCCATCCACCACATCCTTGGTCTGCTCTGATGACTCAGAAGCAATCTAAGCGAATGCCCAAGCAGACTCAAAATGAATGGTATTCCAGTCGGTTCTGCCC---AAGGATACAAATTTTGAATCAAAACAGCCTGGATTATGTGATCTATGGGGGCTGTTTCTCCCCAGAAAGCAGCTGCCTCCCAGCCTGAGTAGCCTGGAGCTAGCATTCAAGATCACTGCAACCATTTATATCTTTGATGGTGCCATGAACCGTCCAACTCATAGCACCCT-GTTGCCACAGTTTTCCTGCAGTGATGAAGCTGCATCAGCAGGAAATGAGCTTACATTTCTCCTTTTCAGGCTCTGCTCATCCTTCTGAGCCTTCCTCAGTTCCACATGAACTTCTGTTTGTCACCGCCTCATTTCAGTACTATCATTTCCCTAGTTCTTGAATCTGTTCAGCCAGGCAGCTGGTGAATTAGCATTCTCATTGGTGGGCATGGTTAT-GAGACAAAGAAAGCAGCTGT

a score=11215
s chr3           111443057 958 + 160039680 aaagctagatgg-aacagaaaaaaatctaacctacagttagcattcaacaggaatgTTGATTGTGAGTTCACACAAGCCTATAATATTTT-GCAA----TATTTTATTCATACAAAACTTTGAATGTGTCCTGATCAATGTATGTTAATGAACTTACAATTTTCAAACTTCCATTCAAAGTGAAAGAAAATAATGATTTAGTTTCTATTCTGTTCTCT------------------GGATGAAGATAGCCTTGCTA--GAGAGTAGTCTGACTTTCTTATGTATATTTGTGTTTGAAAATATGCTACTAAAACGT-----TATTGTGTTTTTTTTTTCTTTTAGTACTCAACAAATGTATTCCCAGGAAAACTCCAAATAACCCTCTGAGGACTTTACATGTGCCTGCCTATTTGGTAGATCTAGCATTACTCAGCTATAATGAGACTGAGTCAGGTCCATAATCCTGTTGGTTTTCATTG--AAGTAATTCCAAAGCCCCAGACACT-GCCTATCCAAATACAAATTATAAA--TCCCAGTCCACAAAGGCACTGCAGAATCTGTTTAGAAAGTGAAAGAAATGAAGTAAGGAGTAAACAACTTGGGAGATGCCAAG-----TACATGATTTAGCAAAGGTTTGCTATGTTATAGAGCAGGACTCTGCAAAGTCC--------------ATACAGAAAAAAACTATAAATTCTGTAAGCCATATGATCTTTGCTGTATAAGCTCAGAAAGAATCATAGACATACACTTGCTCATAATGGATGAAGATATTTCTAAATCA--AATACCATTAAAAAATG--TTCTTAGTTTTGAAGAAAACTATCTAATTTGAATGTATGTCTTAAGCTATTTTATGACAATctcagcattatatgcatatgtatataatatatacatatatatgtatatatatgtgtgtGTGCTTATAT-ATGCATATATATAGTCTTGTTTTGAATAATTTATTTTGTATGTATTCAT-AAATTTTCACAGAAATAA
s HiC_scaffold_1 111722919 939 + 233722169 AAAGTGATATGGcagcagaggagaaactga----------aCATTTAACATAAAGGCAGAC-ATTAGTTTTTGTAAGCTGATGAGAATTCAGCAAAAGTTAGTTTATTCTGACCAA--TTTGCAtctaaacagaaaaatgtat----------------ttctcatgcTTTTATGTAAAGtcaatgaaataaatgttttaattttcatcatattttctacaaaacaaatgaaaagagaaggaaggtagCTATAATACAAAAAGAATTCTAGCATTTTTGTGCATACT---GTCC------ATACTATTGAAGTATCCCAGTgctatattattgaatttttctAGTTctcataaga--------aaggaaaaatagaaattattcaccaagtattttgtttatttctgattACTTAGTAGATCTATCACTACTCCACTTTTATGTGATCTGGTCAGGTTCAAAATCCTGATGATTTTCATAGATAAATGACCAAAAAGCTTTAGATATTGGTCTACTCAATTATAAATTATGAAACTCCCAATat-taaaagcaaatcagaattgattgagtaaatgaaataaaagaaaataaacattaaccATTTGTGTTTCTCCAAATAATCTAAATTATTTGACTAGAA------ATGCAGTGGGGCACAACTCAGCATATTTTCTCTGAAAAGTGtaacaaatagaaatattttcaagtttacAGACTATGTAGCATATGTGATTGAAGCTTAAAATTATCCAGTAACATGAATTTGGTCATA---------------TATAAAATAACAGTGCTGTTTTACaatgaaattttacttttgaaaatagcTTATTAGTT------CATAAATTTAGTTATATCATGCTACTTGACTTGTCTTCTG-AGATATTAATAACAT-TACAAACACACCTATATGTGTGGAAGTGAATATTTCTGATGCATGT---TCCACTTGGTGTAAAGAATCT-TTGTGTCATTATTCACAAAAATATCACAGTAATAA

a score=52835
s chr3           112302362 839 + 160039680 AGCACAGCCATGGTTCGTGGTCCCAAGAAACACCTGAAGCG---CGTAGCTGCTCCAAAACATTGGATGCTGAATAAGTTGACTGGCATGTTTGTTCCTCGTCCATCCACTGGTCCTCACAAGCTGAGGGAATGCCTGCCTCTCATCATTTTCCTAAGGAACAGACTTAAATATGACCTGACTGGAGATGAAGTAAAAAAGATTTGCATGCAGCGATTCATTAAGATTGATGGGAAAATCAGGACCGATATAATCTACCCTGCTGGGTTTAAGGATGTCATCAGCATTGACAAGACCGGAGAGAACTTCCGTCTGATCTATGACACCAAGGGTCGCTTTGCTGTTCATCGTATTACACCCGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAGGAATCTCGCATCTGGTGACCCATGATGCTTATACTATTCGATACCCTGATCCCCTCATAAAGGTGAGTGACACCATTCAGATTGAGTAGGAGACAGGCAAAATAACTGACTTCATCAAGTTCGACACTGGGAACCTATGTATGGTGACTGGAGGTGCTAACATGGGAAGAATAGGTGTAATCACCAACAGAGAGCGACATCC-CGGCTCTTTTGATGTGGTTCATGTGAAAGATGCCAATGGCAACAGCTTTGTCACTCGGGTGTCCAACCCTTTTGTTATTAACAAGGGCAACAAACCATGGATCTCTCTTCCCTGAGAAAAAGGAATCAGCCTCACCATTGCTGAAGAGAGAGACAAGAGGCTAGCGGCCAAACAGAACAGTGGGTGAAATGGTCTCTAGGAGACATGCTGGAAAAGTGTTTGTAC
s HiC_scaffold_1  55718642 838 + 233722169 AGCTCAGCCCTGGCTCGTGGTCCCAAGAAGCACCTGAGATGAGATGAGGTGGCTCCATAACACTGAATGCTGGATGAGTTGAGTGGTGTCTTTGCTCCCTATCCATCCACTGGGCCCCATAAGCTGAGAGAATGTCTGCTTCTCATCATCTTCCTAAGGAACAGACTCAAGTATGCCCTGACAGGGGATGAAGTAAA---GATTTCTATGCAGCGCTTCATTAAGATCGATGGCAAAGTCCGAACTGATACAACCTACCCTGCTGGCTTTATGGATGTCATTAGCATTGACAAGACAGGAGAGCATTTCTTTCTGATCTATGACACCAAGGGTTGCTTTGATATTCATTGTATTACACCTGAGGAAGCCAAGTACAAGTTGTGCAAAGTGAGGAAGATCTTTGT-GGCACAGAAGGAATCCCTCATCTGGTGACCCATGCTGCTCGTGCCATTCCCTACCCTGACCTCCTTCTCAAGATGAATGACACCATCCAGATTGAGCTGAGGTCTGGCAAGATCACCGATTTCATTAAATTCAACACTGGTAACCGGTGTATGGTGACCGGAGGTGCTAACTTGGGAAGAGTTGGAGTGATTACCAACAGAGAGAAGCATCCTTGGCTTCTTTGATGTGGTTCACCTGAAATATGTTGATGGAAACAGCTTTGCCACCAGGCTCTCCAACATTTTCATCATTGGCAAAGACAACAAGCCAT-GATTTCTCTTCCATGAGGAAAAGAAACCCACCTCACTATTGCTGGAAAGAGAGATAAGAGGCCTGTGGCCAAACAGAGCAGTGGGTGAAATGGATTCTAGGTAATGTGTTGGAGAGGTCTTTGTGC

a score=18524
s chr3           112302711 477 + 160039680 TTACACCCGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATCTTTGTGGGCACAAAAGGAATCTCGCATCTGGTGACCCATGATGCTTATACTATTCGATACCCTGATCCCCTCATAAAGGTGAGTGACACCATTCAGATTGAGTAGGAGACAGGCAAAATAACTGACTTCATCAAGTTCGACACTGGGAACCTATGTATGGTGACTGGAGGTGCTAACATGGGAAGAATAGGTGTAATCACCAACAGAGAGCGACATCCCGGCTCTTTTGATGTGGTTCATGTGAAAGATGCCAATGGCAACAGCTTTGTCACTCGGGTGTCCAACCCTTTTGTTATTAACAAGGGCAACAAACCATGGATCTCTCTTCCCTGAGAAAAAGGAATCAGCCTCACCATTGCTGAAGAGAGAGACAAGAGGCTAGCGGCCAAACAGAACAGTGGGTGAAATGGTCTCTAGGAGACATGCTGGA
s HiC_scaffold_1  30611596 432 + 233722169 TTACACCTGGGGAGGCCAACGACGAGTTCCGCCAAGTGAGAGGGACCTTTGTGGGCACAGGAGGACCCTCACAGCTGGTGACCCACCGTGCGCG-------------CCTGG-CCCCTCCTCAAGGTGAATGGCAGGGTCCGGACTGACCCAGGTGCTGGCAAGGTCACC-CTTTCATCAGGCT-GACACTGGTTACCTGCGTGTGGTGCCCGGCGGTGC---------------------GGTCACCAACAGGGAGAGACGTCCTGGCT--GTGGATGTGGCTCCCGTGGAATATGCCAATGGCAACAGCGTGGCCACCAGGCTCTCCCATATTTTTGTTACTGGCAAAGTCAATAAACCATGGATTTCTCTT-CCTGGGGAAGGGAGACCCACCTCACCATTGCC--AAAGAGAGACAAAAGGCTGGCAGCCAG--GGAGCAGTGGGTGAAATGGTC-ATAGGTGACAGGTGGGA

a score=23914
s chr3           112591562 516 + 160039680 aggcaccaTTTTCTAAGATGTCATAACAACAAAAAGGGCTAGGTAGTACCTTCTTCATGGTTTGCAATGTGTGGTGGCAATGCATCAAGCTCAGCTGATCTCCAAGATTCCATGTATCTTGATGTAGAAGTATGATGCAGACCTTTTAGAAGAGGAGGTCATTATTAGCTGCTCAG----------TAAAGTATATGTCTCAAAAGAACTTGTCAAACAGATTCGTGTCAAAGCAGAGCCATTTATTGAATGATTGAAGGAAGCAGAGGAGGAGTCTTCTGGTGGTAAGGAAGAAGACAATGTTGAAAATATTGAGGTGGTATATTTGAAGACTGCCAG------------------TGTACCAAAAGTTGAAACTGTGAAGTCTGACAACAAGGATGATGACATTGATATTCACGCCATTTAAAACTACAGATGCAATTTAGCTTAACAGTGGAATGCTGCAAATTCTCCTCCATTATCAGCCAGAAGTGCAACATGTATGTGCAAGAGCTAAAGTGGCTTAACATCATGCTACAGTTGATAC
s HiC_scaffold_1 110931116 532 + 233722169 AGTTGCCATTTCCTCAGATTCTGTCACAAGAAAAAGATC--AGTGGTAACATCTTCATGATTTGGAGTATGTGGTGGTGATGCACCCAGCTCAGCTGCTCTGCAAGATCCTGAACATCTTGA---AGATGTACTATGCATTCTTTTTAGAAAAGA---TCATCATCTGCTGGTCAGAAATGGCCTTTAaggaatacatttaaaaagaacttGCCTATGAGATTCGTGTCAAAGTGGAATCaattataaaatgtttgaatGAGGCAGAGGAAGAATCCTCAGGAGCT---GAAAATGATGAAGATGAAAATATTGAGGTGGTTTACTCAAAGGCTGCCAGGGCACCAAAAGCTGAGTGTGTTCCAAAAGCTGAAACTGTGAGTTCTGCCAACAAGGATGATGACATTGATAATGATGCCATTTAAAAGGATGGGTTCAACCGAGCCTA-CAATGTAATGCCACAAATCGTCCTCCACTATCAGTCAGAAGTGCAGCATATATGTGAAGAAGCTCAAATGTCCTAACATCATGCTACACTTTAAAC

a score=25581
s chr3           112591567 506 + 160039680 ccaTTTTCTAAGAT---GTCATAACAACAAAAAGGGCTAGGTAGTACCTTCTTCATGGTTTGCAATGTGTGGTGGCAATGCATCAAGCTCAGCTGATCTCCAAGATTCCATGTATCTTGATGTAGAAGTATGATGCAGACCTTTTAGAAGAGGAGGTCATTATTAGCTGCTCAGTAAAGTAT----------ATGTCTCAAAAGAACTTGTCAAACAGATTCGTGTCAAAGCAGAGCCATTTATTGAATGATTGAAGGAAGCAGAGGAGGAGTCTTCTGGTGGTAAGGAAGAAGACAATGTTGAAAATATTGAG----GTGGTATATTTGAAGACTGCCAGTGTACCAAAAGTTGAAACTGTGAAGTCTGACAACAAGGATGATGACATTGATATTCACGCCATTTAAAACTACAGATGCAATTTAGCTTAACAGTGGAATGCTGCAAATTCTCCTCCATTATCAGCCAGAAGTGCAACATGTATGTGCAAGAGCTAAAGTGGCTTAACATCATGCTACAGTT
s HiC_scaffold_1 200986696 514 + 233722169 CCATTTCCTCAGATTCTgtcacaacaacaaaaag-------caatacCTTCTTCGTGGGTTGGAGCGTGCAGTGGTGATGTATTCAGCTCATCTCCTCTTTGAGAACCCGCCTATCTTGAAGGAGGTGTATGATGTAGACCTTTTAGAAGAGGAAGTCATCATCAACTGGGCAGAAAAGGGCTCTAAGAAGCACATTTCCAGAGAACTTTCCAAAGAGATTCATGTCAAAGCAGAACCGTTTATAAAATGTTTGAAGGGGGCAGAAGATGAATCCTCCGGTGgtaaagatgacaagaa-gatGAAAACACTGAGTGAGGTGGTTTATTTGAAGACTGCCGGTATGCTGGGAGCTGAGGCTGTGAAGTCTGACAACAGGGATGATGACATGGATATCGATGCCATTTAAAAGAATGGGTGTGACCCAGC-TAACAGTGCAATGCTGCGCATTGTCCTCCAGGATCAGCCAGAAGTGCAACAGGTATGTGCGGAAAGTCAGATGGCTTGACATCGTGCTATACTT

a score=29728
s chr3           112595766 845 + 160039680 CTAAATACAAATAAAGGCTTATCCCCAGAGCTTATTTTCATGAAAGCtataattattattttatttt-----aGGTAGTTGAGTAGGAAACACCAAACCCATTTCTTACAAAATAAAACATTGTCTAATTCTGATCTGCTTTTTAGGTCTCCTTGACAGGAAAACTACCCGCCTATATAAAAACTGAATACTGTTCCCTCTGCAAGTATAGATATCACCCTTTAGAGACAGAACATAAATCACATCATCAACTCTAGAACATCATGACCCTCAAAGTGTGAGTCTAACTCATTTGCTATATGACCCAAGTGAGAATCGTACATGAATCTGGGTGCTATAGGCAGTGGTAACCTTAATAATAGGTGACAGAAGGGAGGGGACAGCAAATGCCTTGAATGAGCTGTAGAATTCCGGTTAAGTGTTAAAGTATATCTGAGCTATACCAAGGGAAACATAGAGTGTGCAAGAAATAAAATAGAACTCCTTCAAGGCAGTAAAATAAAATCCTCTGTGGCCATTTGTACTTTATGTGATATCCTGAATGTTATGAGTAAATTTGACATTTCCTTGAAATGTTTTCCCATCTGGTGGCTGACCATACTGCCGTTGTCATTCACT--GAAGCACCACTGATGACTACTTTGAAAGTTCAAGGAAGGATTATTCAGATAAGCTGGGAAGAAGATTTGTAGTTAACCAAATGGGAA-GAGCTATCCTGAATATACCCTCATTTCTTTATTGCTC-CCCAATGAACTCAGAAATTGGGAAAAAAATGAAAACTAGACATC---------------------ATTAGGACTACCATCTGTGTAT-GTGACTGTACTGAGGATTATGATGGCTAGCTTGTGTATTTGA
s HiC_scaffold_1 110393339 850 + 233722169 CTATGTACAAACAA--GCACATCCACATAAT--------ATAAAAACGCTGcttattaattcattttgtttaaggtaatgcaatggaaaatactGTGTT-ATTTCTTAACAAATAAAA----------TTCTAAGATGTCATCCAACTCTCCTTGATAGGAAAGCTGTTCTATTCAATAAAAATTGAATAGTGTTTCTTTTGGAAATATAGATATGACACTTTAGGGAGAAAATATAAATCACACCATCAACTGTAGAACAGCATGACCCTCTAACTGTGAGTCTATCACATTTGTTTTATTACACAGGTGAGACTTACACATTAATCTGGCTGCTTTTACCAGTGATATCCTCAATTATAAGTGCCTGAAGAG-GGGAATGGCAAGTGCTTTGAGTGAGCAGCAGGAAATCTATTAAATGGCAAAATGTGCCTAAAATACACCaagggaaaaatatattct-taaaaaacACA--GGAGTTCCTTCTaagcagtaaaataaaatcttttgtgGCCATTTTTGCTTTATGTGCTTTCCTGAATGTTGTGAATAAATGTGGTGCTGACTTGAAATAATTTTCCATCTGGTAGACGACCACACCGTCCTTCCCCTTTTGTTGGTAGAGTAGCCGATGACCA-TTCATAAATCACATGAAGATTTATTCAGGTATATTACAAAGGGCAGCCCTACTTCTCAAACtggaaacaaactaaattaaATGTACCTTCAGCTTTCTATTGTTCTCTTAAAGAACTCAGAAatctgaataaaaatgaaaattagatatCATTAGATATcattaaatgaaaattagaatCACCATCTGTGTCTCTTGTTTCTATTCTGACTTATATTTAccagtttatttatttga

a score=47009
s chr3           112602700 3006 + 160039680 TGATTTCTAGCCTTTACTATACTGATTTATAAC-------CACAGTGTTAAAGTAATGG--ATAATAAATGAACTGCATCCTATGCCCAAGCTGCCCTCTTTGCAGCAGCAGAGATC-CTAAATGGAGACTTTGTGACCTGTGCGAACTCACAAAAGCTCCTTTCCCATGTAGAGCAACATAAGGGT-------TTGACATGATCAGAAAGATCCCTTGGAGAGCTTACCTATTTACTTTAAAGCTATTAGAGACTGGATATATTTTCACAAGTAACTTCTCT--AAGCCCACTCC-------------CTCTCTTAGCAATGACTCATTATACACTGATAAATATACATGAG-----ATCCTATTCTACAT---GTATTACCACATTATTTTAATAGGATGTTATATCTTTTTAGCAATAAT-ATAAACAAGCTTGTTTGAGTTTGCTGAATATATTATCCAGTT-------------------------------------------------------------------CATTTA-------------------------------TTTTTAGAGTTAATATAACTTGAAC----------------------CATGTGGATAT-CTCAAGAGTCAAAACCTATGATCATAT---TTTAATAGATATTACTATATTTTTCCATTAG---TATAAATTATTTTCATGTTATATAATTCATTTATTTGATAATTATGTAATGATATAATAAAACATT-CATGAGACATTAGA--GTTAAAATGCAC----ATTTCCCTGA--TGTTTTAAATTAGCATGCTTTATTTTATTTACATAAGAGTTCATTTTCATTGTCAGCCACCTGGATTTAGCATTT---GTTTCCTTTTGCATTA----GGAAAAGATTTTATAATTAAAATAGTGGAAATAAGATTCTTTTGTTGTGCTATCCATT---TTTCCCACAATTTTGTGAATTTTTCCTTCATTCTGTTAGATGTGTGACCCTAAGGTATCTCTCTCGATGTCCTATGGGACAAATATAGAGAATAATATAATCTGACACTTAAATAACCATAAGTGACTAAATAACTGTCCAAGTCACTAGAGGAAAGAGAAGGTCATAGAATCTGCATTTCAGCTTGCAGAGCAGGAATAAATTATGCCTGGGAGAATTCAGCAGTGTTTAAGGAGGCAGAGTATTACCCACATTAATATATTGACAGAGGACAAAGAAAGGTTTAATTAACTTAGTGGTTAACCTTAAAAGTTTAAAAAGAACCTACA-------------ATCAAATCTATTATCTTTTCTATGCAAGGGCCATTAATTTGTACAGTCAATATGGAACATCCTCTATACCGACTGTAGCTTTCAGAGAATATTCATTCAAATCAGTGAAAATGAAATTAAATTAAAAAAAATCAATGGAATTATGAATGTGTATTTATGTAAAGAGCTCCAAGTATTTGAAAGGGGATTTGAATAAGACTTTAGAGGTCAGAAAAAGTGAAAAGTCACGAGCTCTGAAAGCTGATGACTGTGGACAATTCCACATTACTGTACAAAATGATGGGGAAGAAAGTACCT------GACCAAATAATAGAGCTGTACACCTGGTAGTAAATTGTCATATGTGACCGTGAGGTAGGAAAAGAA-AACAGTATAATGAAGaaaaatatttaaaaatatttatGGAGACATAGATCTGAATTATGTTCCTCAGAAGACCAAAGTATTAGAGACAGTAAAATAATTTCAACACTCAAATTTCAACACTAAGTATGTAGATCTGTGAATTAAATATC--AACCAAGTTTTAAGTTTATTCATGAAATTAA-CTCACATA-----TAAATATGCAAGTTATTTGAAAATATCTTACAATTGGT---AGTTACTTAAGAGGAAATCTGATGTTAGATT------------GAAATTCTAATCATGTAGGCTATTGTAGGTCACATAAAATATTT--CCCTATATTAGAGAAGAAAACTACAAGCAAATCAGTTTGCAGAGTAAAAAAAGACT--ATAACAGGTCTAGCTGATGGTTGGTTGTTCATTTAGTTATTCAGAAGATATAGCACTATATTGGTAAGGTACATAATTTTTTGAGTTACACTGATATAAATTTGGAACAAATTTAGATGTAAAA--------GTAGAAATGACGCGATTTTTGGCTTTTTATTTTGTTACTTTTTAATGAGTTCATTGAGCAT--GGGAGAATGAGAGATTCTTTGGGGTAGGTttactattactatgattactattataattataataataattattattattaATTTTGTTACATTTGTACTTAACATGAAACAGCCTGAGAAGTTCAGGTTGATTCATTCAGGACTCAGATTCCAAGGT--CTGGAGTGAAAGCAGAGCTCTGGTTTAGGAATCTTGTTCTAGGGTCATTGTTGCACTCTAAGCAATTAAGCAGAAGACAA-AGCTAACAAGAATTATGTTTTCTCTTCATCTAGTTGAAAAGGAGACTAAAAAGGA-------------TTATCTAGAGGTTATGAATGGAATTTGCAACGTGTGG-AAAAGAGCAGCCTAAAGCAAAATAATACAAGAAATCCAAGCCCAGAGCTCAGTCTTTGCCGAGGCAAGAAACATAAATAAGTTGAGCTCAGAGATAACCAAGCAGATTTCTCAGTACAGAAATCAGTGTTTTCAAGTGTTGAAGGGCTTTTCTTTTGTGTACTTTCATTCTTTCAAAGACA--TAGGAAAAATAAGCTTTTCATAGCC-TTTGTTCACCTGATAATTAATTATTGAATGCCCATGATGAAACAAGAGAGAGAAAGTGAGATTAAAACAAAAACAAAACCAAGCTAACCAAACAAACATAACAAGAAAGAAAGAGACAGGGTAGGCTGTTGTTTACAGAGACTTCATAATCTCATATACTCTAGTTTTAACGTAAATTAATAAATGCATGAAAATAATTGATA--------------ACATTATTTGCAGAGAATTAAAGAAACACAAAGAGAAATAAAATGATTGTGTTTATGGTAGAAAAATGTACATCGTGTGTACTCAGGGACCTGCCTTTTATATTGTATGCTGGCTTTTGAAAAGAGCTCTGGCTGAGTGGAAAGAATGAGACACAAAGCTATATTGCTTGGCATGGTGAAAGGAAGACTAGTGAACCTTG---AAGAGGGAGAAGACATGGTTTGCCTGGAAATGTACAAATGA-GTCAATGAACCTAGAAA
s HiC_scaffold_1 110410646 2980 + 233722169 TGGTTTTCAGTCTTTGCTGTACCGAATTATATCATCACAGCAGAGTGGTCAGGTAGAGGCGGTGATCATT--ACCGCACTC----CTCAGCCCATTCCCACAGCAGCTTTAAAGACCTCTGACTGGAAACTCTGTGACCT-TGTGTCCTCTGAAGGATTCTCTTTACTTTTGTAATATGATGTGGGTGGATAGGTTGACAC------AGAGAGCCCTCTAAGAACATA--GGTTTTCTGGAAAACTATTAGACATTAGACCTATTTCCATACACAATGTTTCTTAAAGTCTGctataataaagagaaaattttctatGC--TTACTCTTTATATACTGATAAACATACATAAAGCTTAACCTTATTGTATTTCTGGTATTGCCATGTGACACTCATATGTGACTAT-----TTCATCAAAAATCAGACACAAATTTACTTAGGTAGATTGTGTATagtatacagtttttaaaaaaaccttaagACAACTGAACATCCAGATAttcagaaagaaaagtactaacatttttaatacatttagtagcttttttttttttttttggctttttcctttttactggtaccagggatcgaactcacgactgcctgcttgcaaggcaggcgcttatgctgctgagctaaatccccagcccctatacatTTAGTAgcttttaatatgttttttctattgctttacatattattttcatatCCAATATTATGTTTCTTTGATAACTTCCCAATGGTACCATAAAACATAATATGCCATATTACATGGTCAAAAAGTGTTTTAGTTTTTCTGCATTGTGTTAAAATAGGATCC---ATCTTGTTTAAATAAAAGTGTATTTTCACTATAATAAACCT---CTTGCCATATTAGAggcccttttgttttgttgtagaaaAGATGTTGTAATGGAAAAAGTTGAAATGAAATTTTGACAATGTGCTTTCCAATACATTTCTTACGATACTGTAAATGCTGCTGTCAGTTCTTTAGAAATGGGATCCCGAGGTATCTTTGGCTGTGTCCTATGGGACAAATCCAGAGAGTAATATAATATGACACTTAAATAACcataaatgactaaataaatgtTCAAGTCACTAGGGGAAAGAGAAGGTCATAGAATCTGTATTTCAGCTGGCAGAGCGGGAATAAATTACACCCTAGAGAATTCAGCTGTGTTCAAGGAGGCAGAGCATTACCTGTGTTAACATATTGACAAAGGACAGAGAAAGGTTTAATTAACTCAGTAGTTAAccttaaaagtttaaaagaa--ttaCAATGGAGAAGCAATATCAAATCCATTATCCTTCTCTACTAAGAACCATTCATTTGTACATCAAATGTGGGACACCAACTCTAATGAC---ACATTTCCATGGGGTTTATGACTAATCAATGATATTAGAATTAAATTATTAAA----GACGTAACTATAACTTCACAGCCATATG-------------CCTTGAGAGTATTTATGAATCAGTGTTTGCAAACtaggaaaa-----------------ctgaaaattaaagattGAAGTCTTTTACTAATTA----ACAAGGgtagggagagaaaaaagatttcgatagagaaaata--aaatttttaaaccatCCTGCACATTTGCATGGATGGCT----GATAGAAAAAGAGTCACTGT-CATTggacaaagacagagaagaaaa---gtgGAGATGCAGATTTGAATCAAGATGTTCAGAGGACCTGAATATTAGAACTACTAAAATACTTCATCTTTTcagatataaatacatgttataCCAATCTGTAAATGGAAACACATAGGAAAGTTTAAATTCTCTTTGGGAAactagttttatatatattttaagaatataagaGAATTAAAGTTATATTGTTAAGGCTTAAAACTTCTTAATAGCATGTTAACTAGTAGACTTCCAACACTGTGTGGGTTGCTATCATACAAATTGTTGTAGGCtgtgttaaatattttactctttattgtaAAAA--------AATTAACTCTGGTTGCAAAGGAATAGATGATTGGAGAGAAGGATAATGTGCAGACTGG---------TAGTTATGCAG----TATGGGAGAAGATAGATTTGATAc----ttctttaaaagacaaaaat---aacattgAAGAACTGTAG-TGtctaattttctgtattaaaatgATTCTATTTATAGCGGTT--------------------------TTGAACATAAAGAAGAATCAGAGTTGCATTCGAGAAGGGT-------------------------GCTGTGATGGTA-----------------------ATCTGTGTTTAATTTGAAGAAGTATTAGCAGCTCAAGTTGAAAACTGTGAGATTTGGAT---AAAGTGGTTACAATGAGAAGAGA----------------TTTATGCTAAGG--ATTATGGAATGCTATGGAATTGAACAGAAGACAATTGCTTGGAAGAATTATGTTGCCTCTTCCTGTTGCTGAAGAGGATTCTACAAAGGAAGCGGGGAAGGATTAACCAGGAGGGTGTGAATAAATTCTGCAGCATGTAATGAAAGAGAAACACCAAGTAAAAGAATATAGGGAAACCAAA--TGTAGttcaatctttaaaaaaacaa-aaagataatcaAGGAAAGAACACAGATAACAATGGAGA---CTCAGAATACAAATCAATACATTTAAGGATCTATGTATTTTACACTTACAGTCATTGACTTATTCAATGAAATTTAGTAGGGAGAATCTTTTTATAGCCTTTTGTTCATCCTGCAATAAAATATTGGGTGTCTACTGtgaaacaaaagag--------------------------------------------aacacaAAAGAGAAGTCAGAGTC--------TTTCTGTTTTCATAGAGTTTATAA----------TCTACCTTT--------CCAATAAAGGTATATGAACAGTAGACAAATCAGTCAACAACACACAGTTTGAAAGTAattaaagcagaagaaaaaaaagtaa--------tggttATGGAAGAAGATACTTTGTTACAGGTATTGAGGG---TAAATTTT---TGATAGGGGAGCAATTGTCCAAATACCTGGCTAAGGTGAAACAATGTGCCACAGAGT--TTGTATTTGGCAGAGGACAAGGAAG-----------TTGCTCAGTTGGgggaaaatttgatttttcttaaaagttacaAAAAACGCCAGTAAGCCTGGAAA

a score=18529
s chr3           112625139 1365 + 160039680 aaaaGTTTTTGAAATTATTACAAACTTTTAAAATTGGAAATAAAACAGATACTTTCATAT---ATTATTTACTAC-----------TTAAAAAATTGGTTATATTGGAGACATTGTAAGATGATAAAATTTCTATGTG----------TAGTTTACA-CTATAATTGGCCTTTTTATGAACTTCAATTAAAATGACCCTCAACAGAATTTGCTAAGAAAAGTTAAGAACATTTTCATAAGGGTGTAAATCACAATTTCCCTGTAAGTCTCATTATTTTTAATTCCAGATAT------------------------ATCAGTATATTAATTCAGAAAGAT-----TTTTTTTATAAAATTGAAGATTC---CGTGAA------------------------------CATTTTTGAAAATAGAATA------TAAAATATGAAGACTTGCT-------TAGAGAATTTGAAACTTTTCTGTCACATAGTCATGTTGAGAA---------------------TCATTACTATCAGCA--------------------ATCAGTGTCCTGAGAATATCTA---CCTTTTACAAAGCCCTCT----------CTATTCATATGCACAGTC------------------TTAT---------------------TGTATAATCTCTACAAAGAGCCACAATTAGTGGCTATTATGGTGAAAAGATACCAGCTGACATATG---GAATAAATACTTCAAGTAAGGTAAAAATAATTTTTA--TCATTTGACAAAATAAAAATGACTTTAAAACATAATTTTTCCTCCCAAACTCATTTCTGAAAGGCTTAAAATACTATTAACTTGAAGTGATATTATGAACCAGAGATAACATTGTATCCAGCATGAGCACATGTATAAATTGATACTAAAGTTTCCAGTTGCCAAGTTACTTCTGGGCTTACTGAATGTGAGGAATTTTAAGGACTACTAAACTTGTATGAAAATAAGGAATACCTTGCATGATTTCCCAAAGTATTAGACT-TCCTGTAATGTAATTTACTACAACCTGAACTAAGCAGAAGTGGAGCTTAGCCTTGGGGCAGCACAAAAGTAATCACTTGCTGTTATGATTTTCCTTGTTTAAAATACTCAGGTCACCTTCACATTCCCATCCCTTCATCTATCCTTTGCCTTCTCAGGCTTACTCTAATCTATAGGAAAGCCTCTTTTTGTTTAGTGCACTACCTC-TGCATCTCCAATTGATGACTTCTGAGATTTTGACAGAAAGGCATTTTTCAGAC----TAGATAGTGAAGGTGTCAGTATTCCAGTTACTGTGGAAAGTCTCTGTGCACAGACAC--AGGATGAAATTATATGTTGCAGTATAAGCATACTATCACAAGCCATGTAAGTCAGAAGAAGCCCCAGGCCATCTGGCAGCTGCATTGTAGCTGTCCATTAACATCTTT-TTTGATCACTACAGTGACATATTTAAAAGTTTATATCAAGAAGAGCCATGAAAGTAAGTACACATTTGCACTCCAAACATGT--TCTCCTTTCACCAAggcca
s HiC_scaffold_1 110450597 1476 + 233722169 aaaagtttttaaacttATTGTTAaagtttaactttaaaattaaa-------cttttctgTTGCAATTTTAACTATACAATAGAGTGTTAGGAACTTCTTAATTATTAACACATCTTAAGG-AAGAGAATCTGCATATGATGTATATTTTAGTTCAAAATTGCAATTAGT-TTTATATGAACCGTAATAAAAAGA---CTCAATAGatttatttaagaatattaaGTAATGTaatcacaaat-----aataataatttttgtaCAACTATCATTAATTTTGTTTCCAGAAATTGCATAAGGTTATGAGCAAGGAATATCagcttgtaaaattaaaaattcagtgatCTTGTGACACaattaaagatttaattatgaaTATCACAGATATGTTCagaaatatataatgcattcatgaaaaagaaatactctTATAAATTAAGAAGGATtgttgaaaaaatagaaaatttggaG--TTTCAGTTAATCAATTATTTTTGGAAAAGTCAAATATCCAAGGGAACTTGATACTGTTTGCATTCGTCTTATTATTGATATAAccagtttttttaaaactacCATGTCTTTTTAATATGCAATCTGGGTTGTGGATAATTCCTATAAACAGTCAAGGTGCTGAGTATGTATTTACATGCGGCACTCTCTCTGGGGATGTGAGAATCCCAGAAATAACCTCAGTTTGTGTACAATATtgcaaaaaaat--cagcaaatataaataagaatgaatacttcaaaaaagatgaa-----tttttaaattatttatcaaaGTAAGACAGTCTT---AATATA--TCTTTCCCAGAAACTT-TTTTTGAAGAGTTTTAAATACTATCAACCAAAGATAATGTTGCAAATCTAGGATA------------------------GTCTAGA---------------------GCTGAATTACTTAGGag-ttatcacataaaataaatttcaaaaactaatgAATTTTTAGTAAGAAGAGTTTAATTTTGCCTGATTTTTCACCCTATTAGCTTCTCCTGCAATATAATTTAGTGTAGCTTGAACTAAGCAAAAGTATAGGTTAGCCCTAGGCTAGGGAAAAAGCAATCACTTGCTGTCATGATTATTCTTGTTTAAAATTCCCCAGCCATCCCTGCACACTCATCCCTCAATCTATTCTTTCCCTTCTT-GGCTTGCT-TAATGCCTGAAAAAGCTGGCCTCTGCACAATACATGACCTCATTCACCTGC--TTGATGATTTTTGAG--tttgaaaataa--cattttggAAATAGCATCAGTGATAAAAATGTGTTTGTGACAATTACACAGAAAGACTTCTTGGAATAGACCCAGAGAACACAAATATTTGGTTTAATATAAGTGCAC-ACCAAACTTCATCTAAGGCAAATGGAGTTGTCGATAATCTGAA---------GCAGTCGTcaatcagtttctttctttaatcaACATAATGTTTCATTAAAAGACACATATGA--AATGGCCCTGACTACAGAGAGGTATAAGGACTCAAAACCCTTCGTTTCCTTTCACTAAAGCTA

a score=32860
s chr3           112643242 1128 + 160039680 TTCCTTTTGAATTACATTGACAATAAATGTTACCATTATGTTCAAA--GCATTAGGATTGGGAGGGCTAGGTTTAAATCATAAATAAGAAATCTATAGTACAACACATTCA---------ATATATGTGTAGAATGAACTATGTGATTTTTAACTTCCTCAAAATCAAGTACCCTG------TATTCTATGCCAAGTAGAGTATGCAATGA--TAACTGTCACATCACAAAGAATAGTTCATTGGTTCT--GCCAAGATAGAATGCAGG--ACTTATAGGTTCTGATTC--TCTTTGAACCTTCAGTGTTACTGAAGAAATAAAACAATTTCTCCTTTCCTTCTTTTATCTTGACTACAATTATGTCTTCACACATTTCACCTTAGATCTGAGCCATAGATATTGTCATGTTCAGTA------GAGATTTTAGAATTCTTTACTATT----TTGGTGTTACTGGAAAAATCATTTAAGCATACTTGCCTT-GGGCAACGATTTTTTCCTTGCTTTTTTCTTTCCTAAAGCAGCTTGTGCTTCTCTGATGCATTCAAGGTCACAGTC--CCTACCCTTGCCTGCTGTACATAGGCAGAGCAATAAAGCAGGCAATACTCTCACTCTATTGAGGTGCAGATCTCATTTCTTCCAAACATCTGTGCAGTATGACTCTCCATATTATACCCTAAACACCAATGTTTTTGGTAATATTATCAACTTTCCCTCTTTGCATTTTTATTTACATTGAAATGACTCAATCGGGATATGCTGTTGTTCAGGCATCCATAATTTTTAACAACATGAAACGTACGAAAGAACATATCAGTGTTGGAAGAATGTGAGTGTTAAGCAATACCATATCTTTAAAATAGAGAACTTAGAGAGATATTAAATATTAGTGAATAAGCCA---CTCGACATTAAGGCAATCATTGTTACAGGAAGAATTGAGCATTATCTCATAATAAGAAAAGATAATATCCTCTGATCATGCTACAATTGCATCTTATTTTCCAGCCTTTACATTATATCACCTAAAGATTTCTTTACACCACTTTGCTGATGTATAAAAGAGACAATTTAGACATATATGAATCAGAGGAAATTACCACCAAGGGATACAAAAGG-------------AACATACATGTTATAATTTTCAGGTTAATAAATATTTAAA
s HiC_scaffold_1 110458434 1099 + 233722169 TCCTTTTTGATATTAATTGTtaataaatttttctattattttctagtTGTATTCTACATGGAGAAG----------AACAAAAACGTTAAATCTATGTATTCATATACCCAGTCATATACATCCatgtccagaaaaaaataaat--tgtttcatCTCCTTAAATTCAAAAACTGTGGTGAGGTTTTCC--------TGGAGAATGCTTTGCATCAATGATCACTTTGCAAA---TAGTCGATCTGTTATCAGATAAGATCCAATGTGGATAAGTTGTACAAAATGACTCATTCTTTGAA-------TTccactgaaataataaaa-----tgtatttttcttattttatctttactaAAATTATGCATTTGCTGATTGCAACTTAGATGTGAGTATTAAAGGTTATCATCGTTGTTACATTTTAAGATTTTA--CTTCTTAACTATTACATTTTGTGAAACTGAAAG-------------TACTTGCCTTTGGGCAATGATATTTTCCTC----------TTTCTAAATTGGTGTATTCTTCTGTGATGCATTCAAGGTCGCAGTCTCCCTACCCTTGCCTG-TGTACATAGGCGGAGCAATAAAACAGGTGATACTCTTACTTGATTGAGGTGCAGATCTCATTTCTGCTGAACATCTGTGCAGTATGAATCTCCATATTATACCCTAAGCACCAAT-TTTTTGGTAATATCATCAACTTCGcctctttgcatttttatttacattgatATGACTCAATTGGGATATGA---TGTTCAGGCATGCATAATTTTTAATGACAGGAAATGGAGAAAAAGCCATGCTACTATTAGAGAAATGTAGGTTTCAACCAAtataatttc-ttagaaaaaaCAATTT----AGGCATTAAATATTCAAGAATAAGCTGTTTCTCTATTTTGAG--AATCATAGTTGTGAAAATACTT---CATTGCAtcacaatgaaaacaaatcattttctGTGATAACTTTAAAATTATG-CTCCCTTCTTAGTCTTCATTTTCTCACATGTAAAGATGGCATTTTGCTTCATTACCGATTTCTACAGAAGACAAGTTAGGATGATACAAACTAAATGCAATGAGGACCAGTGTGTACAAAAGGTAGCAGTCTAAGCAGCatacatat----attttca---taataaatatttaaa

a score=40880
s chr3           112646199 2296 + 160039680 GATCTTTCTAAACTACTCTGCTTTCCCTTGCTTTGCAGCCAAGCACCATAAAGAGTAAGATGATCTACGTTGTTCATCATAAAGGCCAGTGAAGACCATTACTCCA-AAACT-CAGTTTGTGCCTATTAATT------GATAGTTAAAACTTATCTGAATAAAATTAA----TCACATATTACTTTCTGAAAAGACACTGAATAGCATAGTGAATATATTCAGTAGGCTACTTGCTCATCAGTTAGCTTAAGTCCTGTGAGTGTCATGGTGTTAGATAAATAAATAAA--------------------------------------------------------TCTCCCA---ATAGTGAAAACAATACAATAAACCAAACAAACCCTATGATTTATAAACATAGCTTATTAAAACTAAGGATTAGA-AAATGTTCTCTGTATATTTTATTTCCCTACACAAATAAACAGGCAAA--------TGCGTCTGTGGCCACTGACATTTTTCTATGTTGTAGGCTATTTACTCACACTAAAACCTCGGT-GACATTTTCTGAGTAGAGATGTTTGCACATTTTACAGAATAATAAAATATTCAGTGGGTAGATTATAAAGGACTTAACAAGCTTTCAGGGGTACATAAATACCAAGAGATGCAGTCCATTAGGTATAGGATACAGGCATTCTCACACATGTACACACACATATATATTCACAATCACTCTCTAGATGTTGTGTATTTGTTAGTCATTTTATAAAGGT----------TCCAGAAC----AGACAAAGGACAGATCAGGAAAG--------------TACATAATTTAGGAACTTTCAGAAGTACAAAA------------------CCAACATTATTTTAGTATATATCTAAGCTACCATT--TTCTCAAAAAAACTACATTGTA--------GAGTAAATAAAAAAATAATTGAA-----------------AACTATTCTAAGGTTACAACCTATTGA--AAAGAATTCCTCCTCATG-CAATCTTTCTAGAATGCAAAATTCTATTGACCTTATATTTTCAACTCAATTTCTCTT----------ACACCGTTTA----------AGGAAAAGACAAACATTTTTGAATGGAAAGTTCATATTTCTACATA---------AAATCATAATATTAATATATAGAAATTACTAACATGTTCACGTAATATAAAAAATACATGTTTGAGATGAAAATACAAAAATGAAAAACACCCATGGAGCAG---ATTTGAAGGCACTTGGCAGAGCGCACTGTCAGA-GGGTGGCAGGCAGGTCCTTTGAAGCTAATGTTCACAAATTTCCTGGGGCTGCTGCCATCTTCCACAGGAGCAGCTTCTGAATGAGAAATATTTCTGTCTAATCCTGCTGAAGACAGATAAGTCTGCCAATTGAAACTGTAAAGTCCTGACAGCCAACAGCATCCGTTTTGTAATAGCAGAAGACTGATGCTGGAATATCAGGAATGGAACAGCACTATCTGACAGCAAGAAAC----------------------------------------------------------------------------------------------------TAACGTGTTTGACAAGAAATTGGGTCCATGATCATTGCAAGTCAAACAAGATGTCTTTTCATTCAACGCCTCAAAATTACCTTCCTTTTCTAAGTTCAAGATTCATTTCATTACTGACATGTTCTTTTCTTTCTCCCTCGTCAAGTTAAAAAAAAAAATCCAGAAACTTACAGAAATGCACACGTTTCCTGATTTCCTGCATTTTACCAGGTAACAACCTTTGTAAATCCC-TTTTAATAAGAATC---ATAAaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagagaaagaaagagagaaagaaacgaaagagagaaagacagaCAAAGATTCCAGCCCTGTACTCAATCTCATTGCCAGGCTTATTTAT-AAAATCTGTTCTGTTTAAACATTGAGTCTAGTACCTTTCAGATTTTAAAGGAG-TTTATATTC--AAACATCCATCAAATCTGAATTCCTTTCAAGCCCCCTTTTGCC---CATTCTATCTCATAACCCATAGTGTTGTTCACCATTCATCTTACGCTGTGTGACTGGTTTGATAAAAGAAGCACAAAACATAACCACTTTAAAAACCCAGAAAATAAAATTACTGAAGATTTG-GAATAAAGAAAGTGAGACTTTACTA-TTTTCTGAATATTATGTGTAGGTAATGTTTAATTTTCCAGCTTTAGATAATCATTATGGATATTTTCAACAGGTTTTTAAGGCTGTGTGGTTGTTTATCAATACCAAAGTAACAATTTAGAACAA-AATCTATTACATGGAAAAGAGA---GAATA---TTCCTAAGTATTTTAGAAATAATGATTATAGAAATATCCCCCAAGAAACTGATAATCTGAC----AAAATTAAGCTTTTAAAATATG----ATATTGATTTTAACATTGCTTTAAGGAAGGACAATTGTCCATTTTT
s HiC_scaffold_1 110460688 2264 + 233722169 gatcatttaaaaataccatgtcttacT---CTCTGAAGCAAAGCAATGTAGGA----------------TTTTTCATCACAGAAGCTTTTGATGATCATGATTCCATGAACTGCATTTTATAGCTATAGctttaaaaagctatttaaaatttatctacATAAGAAAAGAGCCCAGTATATTGTTTCTTACAAAGATATTGAATAATGTGGTAAA--------ACAAGCTATTTG-TCATTACCTGACATCC-TTCTGAAAGTgtagtggcaaaaaaaaaaaaaaaaaaaaaaagaaagaaaaaagaaagaaagaaaagaaacaaaacatagaaaacaaataaaattttgcagtgatagcaaacccaataaaataaatcaaacaaatcCTATGATTTACcaacatggaataataaaaatgagaattaaatgaacattttctatagattttattttcatcttcataaaaatagaaaaaaaatcatactcaGCTGTGGTCACTGATACTTTTCAATGTTCCAGGCTATTTTCCCCTGCTAGGGAGAGGGTAGAGATTTTCTGAGTAGAGATATTTGCAGATTTTATGGTGTGATAAAACATTTGATGAATAGATTATAAAGCACTTGATAACATTTCAGAGGCatataaatactaaaaaatgCAGTCTTTGGGGGAAATGaaaca--------catacatgtacacaagCACAT---TTTAGACTTCCGGGGAGGCTGGTTTAGTCTAGTTCGTCTTTTGGTGGAAATGGGAGGAGAATACAGGattatgaggaaaaaaataaagggggaaaTGTGGATTAAACTCTTAAGTAGTTTGCACCCTTTCTAAATTACAAAAGTTCTATTATTACAAAAATAAGTATCATTTTAGCAAGTAACCAAAGTACCACCACTTATTCTGATCACTTCTTTGTACTAATAAATACTaactaaaattattattaaatactttttaaaggacAGCACTATTTTAAAGTTCCAAGCCATTGATAAACAAATTTTCATTCATGGTATTTTTTTTGGAATTAATACTGATACTAA--TTGTGTTTTAGACtaattgtctttccttttttcaaatagCTTTTATGtctctcaaaagaaaagatgagagtCAATTCATGATAATATGTGGCTTTTACTTGCATAGTTGTAAAT--TAATGTTAAAACAGAGAAATAGCTAGGGTTTGTATGCAGTGCTAAGAATACAGATTTAAGATGCAAA---------GAAAACCACCCAGGGAGCAGGAGATAGGAAAGTACTTTGCAGAGTGCACTGTCAGAAGGGTGGCAGACAGGTCCTTTGAAGCTAATGTACTCAGATTTCCTGGGGCTACTGCTGTCTTCCACAGGAGCAGCCTTTGAATGAGAAAAAATTCTGTCTAATCCTGCTGAGGACAGATAAGCCTGCCAATTGAAACTGTAAAGT----------------------------------------------------------------------------------------CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACATGTTTGACAAG-AATTGGGGCCATGATCATTTCTCGTTAAACAAGATGTCTTTTCATTCAAACCATC-TATTTACCTTTATTTCCAAAGTTCAAGACTTATTTCATTACTGACATATTCTTTTC-TTCCCACTTATCAAGTTTAA-------------AAACTTACAGAGATATATGAGTT---TGA-----TACATTTTACTAGATACCAacctttgttattttcattttattaaggaCTGCAATACAAAGAATG----------------------------------------------------------------------------------------------------------CAAAGCTTCTTGCACTGTGTTCAATCACACTGTCACACTCatttataaaaatctattttgtttAACCAACACACCTC-TACATTTCAGACCTTAAAAAAGCTTTCTCCTCCACAATATCTATCAAATTTGAACTGCCTTTAG----TGTTTCCCCCAACATTCAATTATACAACACATCCAGTT-TTCACA-------------------------TTAAGAAAAGAAG---------TCACCAGTTT-AAAATGTGGCTTAAAAAATTATCGAACTCTTGTGAATGAAGAAAATTGAACTTATCTAGTTTTCCTAACATTAAACATACATGACATTTGATGTACTTATTTTGGGCAATAGCCTTGAATACT-------------------------GTTCTTT-------CAAAATTTAGAAGATTGAATAACAATGtatcacagaaaaaaaaggcTTAAATAGGCTTCCCACTTAcgttaaaaataattattaaataattctAATCAGACAAA-----AATTTCACTttgtatattgaatttttaaaatatagaacatATTTATTTCAATG-TGCCCTAATGAATGCTTTTTATCCTTTCTT

a score=7144
s chr3           112651024 231 + 160039680 GGCCGAATACCAACTCTTCATT---CTACCATTGTGACTGTATCTCATCCAGTGTTTACAGTTATA----------------------ATAAGTAGTTTTCAAATAAATATTTTTAATATGAGAAAACCATTTCAGAAATAAATGTTCATAACATGATTATATTTCCACACACAGTGATGAT---GCAGCATTTTA---ATTGCCAGA-------TATATTTTTTAAAttttttattagatattttcttcatttaca----tttcaaatgcta
s HiC_scaffold_1 110470986 270 + 233722169 GGCAGAATTCcaaatctttttttccccagcaTTATAGCTGTATCTAA-CTTGTGTTTA--GTTATATAACTTGTGCATTTTTATGAGGATAAAcaccttttaaataaatactttaaacaCAAGAAAAGCATTTCAAAACCAAATGTTCATAACAAGATTATATCTCTACACACAGTGATTATAAAGCAGAATCTCAGCCATAACCAGAAAGTGTTTTGATTCCCCACATTACTCAatctatcttttcctttcctataaaaCCTTCACATGTTa

a score=12879
s chr3           112667146 665 + 160039680 aaaacaaCATGTAATGTATAACTTTTAAAGTGTAAAAATCAGGT---TTACAAGTATGAGATATATGTGAATTTACCTTTTGATCAAAATCCTTTTAGTGACCCAACCCATGGAAATGCAGCAAAACTCACAGCAGTCCTTGTAGGGAATGGTT-AGCTTTCTCATGAAAAGGTCAGTAGATTTCCTTTGCTTCTCTTTAAGAACTGCTGGTGTCATGCTCACATCTGCTTATTAAGCTGA--CTGCCTTCCAGTTCTCCTTTTCTCCATACTTAAGCCTTTTGA---TAGGGTTAAATTTAATGAGCGGGTATTTATTTGACTTCTGCTTTACTGTATTCAGGACTATTCTGAAAATGTCAGGGAAGTAAAGACAGAGATCAGCATCAAAAGGTTACAAATATCTTGAAATTTGGACTCATATGAACCTAGGTTCAAGTGTTCCATCCACCACAATTTGCACCAA------CACCCACACTGTTCACACTCCTTGTCCAGAGT---TCTCAATTAATTTGATTCAGGTGTGTTTGCAAGTcactgaaatgggaactccatagcaaccagaacttttttctcttttgttcagatctccatatatatcatttaaaccatgtcactgaaatcagctcaaagaaaatgctcaaaggtatttattgaTGTGGGAATTCAAATAAGGT
s HiC_scaffold_1 110474598 637 + 233722169 aaaataaaacttaaaatattacttctaaaatataaatataaattcccTTATCAAATGGAGAAATAATTAAGGTTCACATATAGTCAGG-TATCTTTAGTAAATGAGTc-atggaaagaaaaccaaagacatcatatttctttctggaatcaatttcattttctcatgCAAAAgg-atcaaatttattttattcctccTTCATAACTGCCAGTGCTAC-CTTTTTTCTGCTCATTAAACAAAGTCTGCCCCtggtttctcccttcttccaACCCTGATCCTTTAATGTTTATAGCAGATTTTATTGTGCAAGTGTTTAACCAACCACTGCCTTACTGTGTTTA-----ATTCTGAAGATATTAGAGATATGAGGA----GAGCAACATCAAAAGGCTACAAATAGTATGGAATTTAAACATTTATGAGCCCAAATTCAAATACTACCTGAGGCTCAATTTTCACCGATAACTCCACCCACTTCATTCAGAATCCCTGTCCCCTGTCACTCTGAATTTGTTTGTTTCCTCT----------GTCACCAAAATACAACCTCCAAAATAA-----------------------CAGTGCTGTATCTACAGTATTCTAAACATCAGACCAAGACAGGTTCATAGAAAATACTGAAACATATTGATTAACAAGAGAATTCAGAAACAGT

a score=39512
s chr3           112675567 1032 + 160039680 AACTGAGAACATTTAATACTAGCATTTTATTAAAAGGTGAAATAAAATAAGTTCAGGAAATACTTTAGGCAGAATTTGAACATACATACATTTAAAAGCATGTATTCAAAGTTTGTTGCTATGATTCATAT----------ATGTTGGTAAGCTCAGATGTCTGCAGTAGTTCAACATAAAGAAAAACACAC-ATTTGATTTCCTTAT---GTCTCAGTACCTAATGAATATACTACTTTGACACGTGTGAATTCAAGTGGTGTTACTGATATCAAATTTCTAAAGCAATCGT--------------------------------------------------------------ACTCTGATGAGAGCATAGAGCTCTGGAATATTCTTTTGTCCTCTGAATATATCCCACATCCTATGTCATGGGAACCTC-AAATGCACAGATGTTGTACCATTTAAGCTGCTCTGAGCCTATCGTACATAATCCTGCAATTGATATAATCATCTGCGGGCACTCACAGGTCTCCAGACGACAAAGCTAAGAAAGATAAAAAGACAAGGTGAACTTGTGTCTGCCCTCTCATTAAATTTTGCAAGCCGCTATGTTTAAGCTTCTATTTTATGGACCACTTAGGCAACGATTAACCTTTAAAAGTGTATTAACA-TTTTTGTTTCAGACTTTAGAGAAGATATAGACTAAAAATAGAAATAAGTGATAGTTTGAAGTTCTGACTGGCAAATTGATATTCTAATATTCAAAACATGTTATTTCTACACTCCTATTAATGGAATATTCTGAAATAATCTAGCTATTTGAATTTTATTTTAAAACTAGATTTGTCTTTTGCTGGTACAAATTCTAGTATGAGGGTCATAAGCATGATCAGGATTGCTGAACTACACTG---AAGGGAAGTTACTGATATTCTATTGCTTTTAAATTGAAACATGGTGAAGAATTAAATGAATAGAAAAAATTCATTTAAGAGCAGTATATTTGAATATATTTGCCTTATAAGATCATAATTAAACACATTTTATAAGATCCTTTATATATTCATGTTCTAATTTTCTTTAT---------------TAtat--tggata--ttttatatatttacatttcaaa
s HiC_scaffold_1 110487136 1085 + 233722169 AATTGGGAACAATTAAT-TTAGGattgtatttgaaaacaaattagaATAAGT---------GCTTTAGGTGTAATTTTGCTACA-ATGTGAATTATAGCATATAGACAAA-TAGATTACAaccattaatattaatataattattttggcATGCTTAATCATTTGCAGtagtgaaaaataaaggaaaatagacCACTTAATTTCCGTATTTTGTCTTAGTTCTTAATTTAT-TAGTACCTTGATATCTGTGAAGATAGGTGACTCCATTGACTTCAGTTTTCTGAAACATTCATTAGCTGGAGACAGGCTTTctttagatataaaaatgatgGATGGAATTCAGAACCCAACTGCTGTTCTCATGATAGCATAGATCTGAGGAATATGTGTTTGTCCTCTGAATAAAGCCTACAGACTCTGACATGGAAACCCCCAGGTGCAT-TATGTTGAACCATTTAATCTGCTTTGGGCCTGTGTCGCCTAATCCTGCAGTTCATATAATCATCTGCAGACACTTACTGGTCTCCAGACGACACAGCTAAGTAAGATAAAAAGACAAGGTGAACTTGTGTTTGCCCTCTCATTAAATTTTGCAAGCTGTTATGTTTAAGTTTCTGTTTTATGGACCATTTAGGCAACTATTAACCTTTAAAA-TGCATTAGCATTTTTTAGTTCAGattttcaagaagacacagact-aaaatagaaataaatgatgCTGAAGAGTTCTCA----CAAAGCGCTATTCAACTGTTCAAAACAAGTTTTTT----ACTACCATT-----------------TAATCCACCTAttctaatattcttttaaaactagGTAAGTCCTTTCCTGGTACAAATTATAATATGACGGTTATATGCACAATGAGGCTTGTTGAAATACAATGTTAGAAAAGAAttact----ttttattacttttaaattgaAAGAAGATGAAGAATTAAATGAGCAG-AGAGACTCATTAAGGAGCAATAAAATTCAATCTACTTTTCTTATAAGAtcataattaaatgtattttattagtgcttttaaaatttcat-tttaaatttgctttgtctagaatttgttttctatattatggATACTTTTTGTAGATGACCattacaaa

a score=46799
s chr3           112687630 1195 + 160039680 aaaattactatattaaaatatatttatGCAGCAGTATACACTAT------AGAATTCATTTTAAGTTCTATGAATTTAATCCATTTATAATTTCTGGTGTTACATTTCTTTTTAGATCATGAAGATGCTCAATTCTGTATGCTCACTTTGTTAACTTATGGGTCCCATAATTATTGAGCTATATGAATCATAGTGATTATGGTCTCTGTGCTCATAATTCTCATTGTTAATTAAATGGGGAGGCTCATAAATTTCCACGCATGAATCATATAGAAGGCCACGGTTTAAAATGATCATTAAGTTATCAGACCCCATA------CTTTCTACTTTTTGAAAGAAAGTGGGGCTACTATGGACCTTCCCATGTGATGGCTGCAGAGCAAATGTTAGATGGCCTGGTTTTGTTTTGGTAAGCACAAATATTTTTGGAAGACAAATAGTACTTGGAGCTCCATTTCATTTGACTAATTTTAAACTCAAGATACTTTGTAAAATTTATTGTGCTATAAAGTTTGAGTTAGCTACAGCTTTTCTGTTCTGGTCCAAATAAGCAACAGTCATCAAAGCATCAGTAATTCACAAGCACTGTGTCATGATTAGAGCAACAAAACCATTTCCAAATGAAACTAG-CATTGATTATCCCCAGGGCTTCTGAGATCAAGTATTCTG-AGAATAGTTAATTATACCCTCAGCTCTGCAGAGTTTTTGCAGTGGCAGGTTCAATTTAGTTAGTAAAAATATTGCTTTGCAAGATTTGCAGATGAGTCAATTAGACACTCATTAATTGGGAAGCCATTGGAAATGTGGCACTTCTCAGTTGGGAAATCGTCCAGTCCAATGACTAATGTATATTAATGCCAGCATTAATCACCTCTGAGTCCTTCCTTTTGCATCTGAGGGAAAACAAATTATAGAACTATTCAAGAAAAAGAAA-AGATTTTGATGAACTTGTAGGGTTTGCCAAGAAAGAAATTTGAAGAAACTCTCTGAATGTATT----------AAATTCCAAATTTTATAATAAAAGCAACACAAATTTAATTAAATAAGATTAAAGGCTTGATATTAACAGTGAATTTTTATAGTGTCATATTTTTTAAAAATTACAGAATTAAAGGGTTTAACTTACATTAGTATAGTTTCCT------------CCTTCAAAATTATTTAAAAGGAGACTGAATTTTCTCTTTCATACTATTATGTAAACAGTATTAAG
s HiC_scaffold_1 110492807 1163 + 233722169 agaatta-tatttaaaattttatttacacag---TGTATGCTATGCATagagtatttattttaataactacA--------TCATTTAGATGTCCTGATTTTGGAGTTTCTGTTATACTATG------TTCAATCCCTTCTGTCCAATTTGCTAACTGATGGTTCCCATAAATATTGAACCACATGAATTGCACTGATTATAGTCTCTGTGCTCAGAATTCTAACTCTTAATTAAGTTTG-AGGATCATAAATTTTGGACAATGAATTGTCCAGGAAACCACACATTAAAATGATCATCAACCAAT-aaagtctataaatttccttttctatttttgaagTGAAATTGAATTGTTGTATATCTCTGAATGAGATGG--ACAGCGTGTTTGTTAGtctgatttcctttgtttttgcaaGCACTAATATTTT-GGAACACAAATAGTGCTGGAAGCTTCATTTCCTTTGATTGTTTTTAATCTCAAGATACTTTAGAAAATTTATTATCCCATAAAGATTTAGTTAGCTACAGTTTTTCTGTTCTGATCCAAATAAGCAATAGTCATCAAAACTTCAGTAATTCAGGAACAGTATGTCATGGTTATAGCAACAAAACCATTTCAGAATGAAACTAATTATTGATTATCCCCAGGGCTTTTGAGATCAAATATGCAGCAGTATAGGTAATTATGCTCT-AGCTTTGCAAACTTTTTGCAATGGCAGCTACAATTTACTTAGTAAAAGTATTGCTTCGTAAGATTTGTAGATGAGTCAATTAGACAGTCATTAATTGGGTGACTGTTGGAAATGTGGTGTTACCCAGTTGGGAAATGGTCTATGCCAATGATTAATGTATATTAATGCCAGCTTTAATGACCTTTGATTCGTTCTCCATATAgct-aaggaaaacaaattaaagaaccacccaaggaaaaaaaatagattttg-tgAACTGGT-GTGCTTTTCAGAAGAGAGATT--AAATTGCTCAATGAATGtattaaaactacaaaaatttcaga-attaCATTAAAAGATATACA----TAGCTAAATGAAACTAA----TTGCTGT--------AATTTTTATAGtgtcatattttcaaatattt---taagtaagTGGTTTTCATTTGGTTATAAAGGTTTTTTAATTGTCAGTAAACttcaaaactatttaaaaaacaa------------tttcata--aTTAT------AGTATTAAG

a score=34377
s chr3           112698422 1914 + 160039680 TATAATTTCTTTTGCTGGTCTTTCCATTTCTATCCAAGTGCAATGG-CTTTCTGCTCATATTGGTCTCCTATA---ATTCTAAAAGACT-ATATCTATCAATGCTGAAGGAATATAGACATTAAAATTGTACTT-TGCCTGTGACATCAA--AGATAATAGTTAACCTGATGCTATGCTCTCTGGCCCAGTTCAGTACCACTGACTGCCTGCTGCCATTTCTACTGAGACAGGACTGGTGGTCTGCACTCTCCCCTTTATCTTGCTAAGGAACTGCATTTCTTAGAGTTCCTAATTA-TTTCTCTGAAAACAGCTTTAATTGGTAATAAAAAAATGACTTAAGAATTGAAAAAA---AATCAGTTAATTCCCTCTTC--CTTGACATTTTTATTTTGTTTTACTGAACTATGAAAATAGGAATAGGAGAAAATGTAGATAGGCGAAGCAAATTGAAAATTCTACTTAGGGTTCTGAGTTATGGCATTTTTCTTTAAAGGCCCAGAAACATGAGCTTTCCAATTGCAGTTTTTTTGAAAGTTGGATGATGTGTGTGCCATCTATGAGGGATGGAGAAATAGCTTTGAGTAAATCTCCCAAAGAAACACCCGTTTT-ATATCTCGGCTCTCACAGTGCTTGGCCTGGTAGTTAATTTTTTATGACAGTGTGCTTACTGCACACCAGCCTCAAATACCCACACTTATCTTTCATCCTAGAA---TTATTCTGTACACCAAAGACACTTAAATACAACGCTTAATTTTGAAATCATTTTGGCATTTTCTCTCAGATGTAT-----ACATCTGACCTGGTAAGTACTTTTATTGATTGGTTTTCATTAAATTTTGAAATATGAACTGTATCATG-ATAAA----TACCTGGGTGAAATATACTTATTTGTAATATAGAAGT-TTTTCACAATAATACCTATGTGTTTTAGTTTTATAGCTGCATGTGCATGACCAAAT---acacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacaaacactaacactctcacacaTGCTAGCAAAAGGTTTTGCACCGTACTCATGGCAGATCTGAGCTAGTTTCTGTCAAACAGATTTAGATTCTTCTATGAGAGGCCACAATGCAATTTACAAGCAATTAAAAGGTAATGAATGTGCTGAATGGAAACTACTGCTTAGAAGGCTTTTTGTATGTGCATGGTGGGAGAAGATAGAC-TGGGTCTCTCAGTTGTCCCTGGTAGTAATTTCTTCAGGCAAAATGGCAATGTCAA----------TGGCTGCCTAGAACAGCTCAAAGACAA--TGTATGTTCTTTTCTGCAATGTTTACACAGAGAGCTATGTATATGTCACTGGAGCAACTGCATGAATCATCCTCCAATTAGTTTACTCAGCATGGGCTGTTCTAAGAGCCAACATTGCCTTTGTGAATTTTCCAAAGCCCACAAACAACAATACATGCTTTGCAATATTGAATAATGACAGATGTTAGCAGACTGTGAATTAGTAATCAGCCCCATCCTCGCAGGTTGACT--GTCAGCCTTTGTACACTGATCCTATCTGGCATGGTGGATGATGAATATTCTAAGGCAA--GTACAAAATA-----TGCTTCTATGTAATT--AATGTGGAC------AGTCATGATGGATATAATAAATGTGATTCTAGACATGGGAACATTACGTCAATTTACTCATATGGTATGTGTTTTTTTAATATATTAGCATTT--ATC---GTATTTGAATAAAATGACAACTTTTGTATTACTCATTTTCTGATTTTTCTCATCTTCA--TGCAGACATGGACTTTTCAGTGTAGTCTGGGGCCTATTGATTATTCTATGATATAAAAGAGatttta------atataattaaaataaCAACTATAGTTCACATATTAAAACTGTCAACATTGTTCATGAGTTTTCTTAATTTTCCTTATAA
s HiC_scaffold_1 110500874 1828 + 233722169 TGTAATTGTTTCtgcttgttcttt-atttataaccCAATGTACCAGACTTCCtacttgttctttccttctgcATTCCTCCTGAGTAACTGAAAACCATGAGGCTTAGAGAAA---GGatgttacatttatatttcttattgtgACATTAATGGGATCTTGCTACTCATGATGTCAC---------TCCAATTCAGTATCACTGTATTTCTGCTAAGCTTTCTGTCTA---AGGCCTGGGTAGATATAGTGC-----TTTTCTTATTTGAAAGTTACAGTATCTACTATTCCCAAATAGTCTTTCTGAAAAGAA--TTAATTGACAAAAGAAaattgac--aaaaactgaaagaagaaaatcgatttattttttcctctgccaacctttttgattttgtttaactgtcttacaaaaataaatgtagaaaaaaatgtaaatttttaagttGAATTGAAAGATCCATTTAAGGTTCTGAGTTGTGGCATTTTTCTTTAGAGGCACAGAAACATGAGCTTTCTGAGTGCA-TTTTCTGAAAGGCAGGATGATGTGTGTCGAGTCCATGAATGACTGCGAAATATCTTTGAGTAAATCCTCTAGGAAAGCACTGATTTTTATACCTCAGTGCGCACAGTGGTTAGTGTGATAGttaattttttattccattttgcttACTTTGCCTTAGCCTAACATATTCAAAGTTACCTTTTATCCTACAAAGATTTTTCTTCATAGCTTGTAGACTTAAATACAATAATTAATTTTGTATGTATGTTTCACTTTATATTCTGATATATGGGacacatttattttgaaaatta-------tgatttctttt---taaatat---agtgCTCACTTAATCATGTATAAAATAATAGTTgtataaaatgc-----tttttaatattGATATGTTTTCTTAacaat--------gaattatttttac-----tatatttttgatCAAGTTTTACA-----------ATAGATACTGCCATACCCACATGTCCAAATGGacttacatatacacaca-----taaca-----------gctgaaataaaacttttcac-------aTATCGATACTCTGCTGGTTTCAGTTA----GATTCAGCTATTGATATGATAGGTCATGATGCAATTTAGAAGCAATTAGAAGGTAATGAATGTGCTGAGCTGAAACCTCTGCTTAGAAGCCTTTTCTTGTGTGCATGGAGAAAGGAGATAGGTATGTGTGTCTCTATTGTCTCTTGCAATGATATCCCAAGGCAACCTGGCAATGTCAACACCTCCAGCTATCTGTCTAAAAAGTGTGAAGGCTgacctggat-tttttttctgcagTGTTTATACAAAGACTTTTGAATACTTCATCAGTGCAAT------AATAATTggcta-----ttttc----------ctattttaaaactcAAC-TTGCCACTGTGAACTGTTAAAGGCATAGTTATGGCAGTGCACATTT-----TATTGAATAACAGCAGGCTTTAGTGGCTAGTGAAGAAAG----------ACACTAGCAGTGTGAATTGGTCA---CGTGCACACTG----TAACAGTCACTTATACTGAAGTGCATT---AGGTAAACATACAGAATAGTCTCTGTGTTCATTTAAGTGAAATATGAACTAAActtaacagaataaaaccaatggaagTGATTGTAGGaatggaaacataaaat--atttggctTTATG---TGACTTTAACTAACATAGTA-CATTTCCATCCTAGTAttcaagtaaaataaacatattt---taaatcattttatgataTATCCTGTAATTATTTGTGGGTACA---TCTTTAATTTAGGCTGTGGTTTCCCATCTGTTTCAGGGtcaaaaagatattttatagATGATTTAAATAATGTAGTATTTAT-GCCTAAATTTCAAGACTCTCAGCAT-----Aagattttgctcattttttttgttaa

a score=33648
s chr3           112766454 559 + 160039680 gcaggccacagtgtatgaagtatgaaacgatgacaaacttgatacaaacacggttcca-----tttacagtgagcactgatgatctgaGAGGCTGCCCTGTGGAACAGTTAGGTAGAGCCACCTT-TTCCAGTCACGTGAGCCCTTGTAAAGCAACACAGTGTCCTGTGCTGGATACCTGCTGGCTGGGTAGTTAAAGGGTTTGTTTTGTCATTAGCAGCTAAGGAACTTATTCCACGTGTTCTCGAAGCCTTAATGGTGGAAAACAAGGCAAGTGTCATTATTGTGGAGAATCATACACTTCTCTTCACACAAACACAAGAGGCTTCACCCAGACTCT-----------GTCTCTT-CTGCATTTCAAGACTCAATTGAGATGAAAGCCTTTCTCCATTGTAGCAGCTAGCAAGCGCTCTCTCATGATCTCCTCAGAAGAATACTCAGGTAACTTAAGATAGTGGACACAGGTGTTGACCGATGGATAGCTCGCATCAGTAGCATCA-----------------------------------------------------------------------------------------------------------ACCTTTCGTACAACTGTGAGCCTCGGATGCAGGTTAGCCAGTCCACCTGGGGGCAGAGTTgaacaacca
s HiC_scaffold_1  13604584 675 + 233722169 gcaaactgtAGTGTATTGAGAATGAAA---TGACAAACTTTACACAAACACACTGTTAGAAATTTAGCAGTGAACACTGACG-TCTGAGAAGCTGCTCTTTGGAACAGTCAAGTAGGACCACCTAATTCCAGTCACTCAAGCCCTTGTAAAACAGCACAGTGTTCTGTGCTATACACCTGCTGGCTGGGTA----AAGGATTTGTTT-GTCATTAGCAGCTAAGAAACTTATTCCACATGTTCTGAAAGCCTTAATGGTGGAAAAAAAGGCATGTGTCATTAGCGTGGAGGATCATACACTTCTCTGCACACAAACACAAGAGGcttcactaatatttttaaagtctgaTGTCTCCCATTGCACTTCAAAACTCAGTTGAGATGAAAGCCTTTCTCCATTGTAGCAGCTAGTAAGCGCTCTCTCATGATTTCCTCAGAAGAATATTCAGGCAACTTCAGGTAATGCACACATGTGTTGACTGATGGATAGCTTGCATCAGTAGCATCAACCTATAGAAAGAGTGAAAATAACAAGACCctcagtttaaatattttattcctttcaacCCTAAGTAACTAAATTCCATTTAGATTTTGCATTACTAGAGAATTTGTACCTTGCGTACAACTGTGAGCCTGGGATGCAGGTTAGCCAGTCCACCTGGGGGTAGAGTTGAACAACCA

a score=17224
s chr3           112846354 809 + 160039680 TCCCGTCAGAGATGTGCTTCCCAATT-----TTCAGCAATTGGCCTGTCTTATAAAGAAAGCAACCCAATACTTTCACAAAGCATATAATAGCTTCTTTCTCA--AGGCTTAGTAAAAGAAATCCAAAACA----------TTATATTGCTTTTATACTTCTTTTTGGCACAACTGTTAATGGTGACTTTTTTTTTTTTTGAAACATCAGATTTCTCAGAGCAAGTTATTTTTTTAGATGTAAGGCATTTGAGGAGGCCATTGACTTTTTCAGGGCAATTGAACTAAAATCTTAAATCAGCCATGTGTGAGGTTATTTATGGTGGCTATTTTGTGACAGAGGCAATTTACTGTGA-CTATCCATGTTCCAGTTTTTCAACAAAATTCATTTCTTATTTGTTTACTTGACTTCCTATCATTTTAGG---------ATTTGTGCAGAGCTTTAAAAAGTATTATACACTTTTGAAAAATAAGAGAAAATCTTT-------TAAGCAACTTTGACTTTCATCAGTCTCTACTTTTGAATTGTGTTCTGCCCCCTCA--------ATGTC---TACTGAGGTATTCCCTCATTTGAGG-------------AATCACATTTGCTGCAGTAACTATCTACACGCTTGTCTCTATAATTACTTGCTGCTGGCTTTCTTC--TATGACTGTTTTAGAACACAGATCTTTATCTTTTTGGCCCAGACTTACAATTCAATGCACATGTAATGGCAATA------------CACACCAAAT------------TACACTACAGAGCTGGATGTCTGGACTGCATTCAAGAGCTTgcttgccccagtggtcatggcaaatatctaaaccaggatactcaaatgacggaaatcgattgacttagc
s HiC_scaffold_1 110218859 850 + 233722169 TCCTGTCAGAGTTGT----CATAAATGTTACTTCAGATATTGGCTtatcttttaaaggaaaaatcctAACACTTTTAGAAATAAGATAATAGATTTtctatcataaaaaataacaaaacaaaactaaaacaataaaaggCATTATATTG-GTTTAGATTTTTCTTTAGCAACACTA--AATGTTAACTGATTTTTTT---GACACAAGAGATTTCACAGTGAAAGTTATTTTT--AGATGTAAGGTATTTGAGGAGGTCATTGACATTTTCAGGTCAGTAGG--CAAAATGTTAAATCAGCCATGCTTGAGGTTATTTATGGATTCTGTTTTGTGACAGAGGCAATTTACTGTAATTTAAACACGT--AGGTTTTgtgataaaatgtatttttcaccaATGTCTTGGACTTCTCATGACACCAGGAACAGTTAAACTTGTAGAAACGTTTGCAAATAAATTAAGAC-TTTGACAGATAATTCTACATCTCTTTTAGTgtaattgttcttattttttcctaggctcctctttc---ttcctttctactcTTCCATCTCCAATATATCAGATCATCAAACATATCTTCATTCAAAATCTTTGTGCTTCCTATCATGTCTA--acagtacatgtttacattcctgTCCCCAGAac--cttttttctgatttatttctgtgTGCTTCTTCCAGAACTCAG--TTTTTCCTTTCTGACCCAGAATTACAATTTAATTAGTGTTTACtggaaatgaataaaatagttCACACTAAATACACACATAGAGCACACT--GGAGGCAGATGTCTGGATTCCACT---------------CTTAATTATTATATTGAAGTTATAATAAGGGATATTTAGACAATAGAAATTTATCAGGATAGC

a score=7619
s chr3           112899955 184 + 160039680 CAAACTTCCAAGGTATCTGATGGAGAGACCAGGAACATAATGGGCCTTTCTACTCTGCTGCCCATCCTGGAATCTTGGAAGCAACATGTATCTGAGG-CTTTCATTTCTACTTCTGACCCTGGGGCTCAGCGGTCCCAGTGCCTCAGGCTCTTCTG-AAGAAATCACACTCACTGTGACCTATAGG
s HiC_scaffold_1 125595871 184 + 233722169 CAGATGTCAGTGGTGTCAAATGGGGAGACCTGGCATGTCATGGGCATCTCCTCTCTTCTGCCCAGCTTAGAAGTGTGGAAGAAGCAGGTGTCTGAGGCCTTCCAGTTCCACTTCTAACCTTGGAGTTCAGTGGTCCAA--GCCTCAGGGGCTTCTGTAAAGAAACATAACCACCATGATCAGTAGG

a score=18774
s chr3           113052452 1592 + 160039680 TTTTTTTCAGTGTTAAAAGTCAAATTTATTATAATA-----GCAAGTGTCATGATTAAAAATGCTAGTTAAA-TGATCAAGTATCTAAATAATTTTTCTAATGTAAATACTAGAAATGACAACGCTAACAATTCTATTTGTACACAAAATATTCAAAACATAATGTCATGCACAAGGCCAAAATATAACATTGCACACTGTCCTCTGTCCATTCACCTGCTGGTCCCAGTGTCACACCAGCCCTGGCCCAGATGCTGATTCCTTGGACCACAAGCCTCAAGG-GAGAATGCTCTGAACACTCA--TTAGCGAGCAGCATCAACACTT---AAACACCGCTGATGGCATCCTGACTGGGTGCTTGTAGTTCTCAC--TTCCTTCTCCCAGTAAGCTCCAGATAAAAAAGATGAGCTAGAAAAAC--TGTTTATAAGAACCAAAATGATATGGATCT--TTGTGTTTCCTGTGGAGGTGACATCAAGTTCAATATCAAGGATGAAAAGTGCACCAGCGTGTAACTTCAG-TGACTCCCTCCCCTGTGC-TCACTCTTGCCTCATACCCTTC-AGGAGACCTACCACCAAGAGCAAACAGGAATGCTGC----------GTGGGGGATGGGAG---ACACCATAGAGGGACATTTCCAAGAATTATCTAACCTGGCCTCCACTTAAAACAGGGACCATTCCAGCCA-AGTTTCCCTCCTTGGACCCCAGAGGGGTTTTTTGGTTATTTTGTATCTTATTCTGAGCAATCAGCTACTGCCTTTTGGATGACTTATCTGTTCCTGCCTAAGAACAGGTCCTCCAAATTTGAGGAACAACACAAGTATTATAGACTTCAACATATTAGAAACACCTAAAGTCTGAACTCATTCACAGCAG-GGGGCAGGTGATTTTTTTTTTTTTTCTGCAAATGAGCATGCAAC-----------------------ACCCAGAGAGGGCAGGGGAGCTATGATGTTTATTCCTCTACAACAAACCTCCTCACCCGTCAATATGCATGTGCCAAGTGTGCAATCTCATCAAATGTACCCTG---------------TCTGATCCTGCATCCCCAATATGCTCCTAGCAGATGCTGATGCTCTGTGTGGATGAGACTTCCTCTGA-GATGAGT--CTAAGTGTACAGAGAGAGC-------GCCACCTATGTTTGGACTGTAGGAGATCTGCCCCAGTGTCTCCTAAGCATATCCCAAGGCAAAAGGTTTAGATCCCCCTGGATAAGTGAGCA-GCTGTCTACAAGGCCATAGTAACAGACTTTCTGGAAGCTAGAAGATAAAAACAATTCACTTTGAGTCAATGGAGTGACCTGTGTGCCAGAAGTAAAACTCATCTTTTGTTTACAACATCTCCCTAAGATGATCATGATATAAAGGTATAAAAAAACTCAGCATAT-----TCAAATCTGAAACACATGTGCACACATATACGTTCAGTACAAATTCTA--AGACTCAATGCTTTCCATGGGGAGGAGGGGCTACCACTGTTCCCAACTGAAATCATCTCTTCCTTCAAAGACGAGGAAGAAGCCTAGAATTGTGAGGAAAATGACAGCGTTGCTGGCCAACACAAGACCACAGGCTCCCCACTTGATCACATCCACACGAGCAAGAATAACAGGAAGTCCAAAGGC
s HiC_scaffold_1 148638784 1450 + 233722169 tcttTTTGTATGTTAAAAGTGAAATTTATTACAATACAGTGTCAAGTGTCATGATTGAAAATGCTGGTTAAAGTTATAAAGTATCTAAGTATTTTTTCTAATGTAAATACTGGGACT-ACAATCTGACCGATTCCATATGTAAACAGAACACTGAGAACTGGAGATCATGCACAGCCC----ACGCAGCATCTCGGTCTCCCCCAGGAGCTACCCTCTTCTG--TCCGGAAGGGAAGCAGCGCTGGCC--------------TTGGGGCGTGGACCTCAGGGCGGGAGTGTCCCAAACACACAGCCCAGGCGGCA-CATCAGTGCTCTCCAACCATCG-TAATGG-------ATCAAGTGGTTCCATGTCTCACGTTTCCTTTCCTCAACAGGTCTTGGGTAAAAG-GATGAGCCAAAAAAGCCATGATTACGGGATTCCACGTGACGTTGCATTGCTAATGCTTCAGTTACAAGTGGCTTAAAGTCCCATAGGAAGGGTAAGCAGCACACCGAGGGGTCGGTACAGCTGAGGCCCCGCCCTCTGCAGCTCCCAGACCTCTCCTCCTTTTAGGAAGC--AGCAGTCAGAGCCATCAAGAGCCCTGCTGAAAGCAAGGCAGGGGTGGGGTGCTTACAAAAGGGAGTGACA-----AAGGAC------------ACCCCACTT---------------CCAGCCCTAGCCTTCTTCCCC--ACCCCGCAGGG------------------------CTCCGGGTCACCAGCC-----------GAGGACA--------CCTGCC------AAGACGCTCCAAGCATGTGCCCC----------TCACGGGCTCCA---------------CAGGGATCTGAACTCACTTG-GGCAGTGGGACA--------------TTCTCTTACAAAGGGGCAAGCAGTTGCTGTTGGGGTGCAGTGGTCGAGCCAAAGGAGGGCAGGGAAGTCGGGGCGATGCTTAGTCCAAGGCAAAGCTTCTCAAGCATTAATGTGTACACAAGACCCATGGACACCCA-CAAAAACACACTGGGGCAGGGCGGGGCCTTCAGGTCTCCGTTGCTAATAAGGCCCAAGGTGCTGCTGCCACCC-GTGATCTCCTGATCCCATTTGAAGAAGGGCGGCCAAGGACACCTGGGAAGCCgactctgtctcctctctctgggCCTTAGGAGCCTTGCCCAAGTG-------AGCAGCTGTCCACACACCG--------TCCATATGCATTTCTGAGCACACTGT------GCCCACGTGAACAGCC--------GGCCAAATGCTG----CAATCCAATT-----------------CTGCTTGCTGAAAGGAAAGCTAATCCCTTACTTACAAAGTCTGCCCGAAGTGA-CATGatagaaaagtataaaaa--ctCAGCATATAAACACCATAGTAAAAGGGCAGGTGTGCACGTGTACATCCGG-ACAGAGTCTACAGAACCCCACGCCCCC-------------AGCTACCACTGCTCCCAGCTAAAGTCATCTCCTCTTCCAAAGATGAGGAAGAAACCTTGGATAGTCAGGAAGATGACTGCGTTGCCCGCCAGCACAAGGCCGCAGGCTCCCCACTTGatc---------tgaaaaacaagaacagaaggGTTAGATGC

a score=12238
s chr3           113054003 189 + 160039680 ATCACATCCACACGAGCAAGAATAACAGGAAGTCCAAAGGCAGAATCAACAATCCCAGTGGTGAAGAAATACACCAATTCCGGACAGGCACTGCTGGTCGCGTCAGAGTCATATGTGACCCTTTTGGCAATGAAGTAGGGGATGGGGGAGATGACGTAGAAAATCAAGACGAACAGGGGCCAGTAAATG
s HiC_scaffold_1 148641488 189 + 233722169 ACCACAGCCACTCGAGCAAGGATAACAGGAAAGCCAAAGGCAGAAACCACGATCCCGGTGGTGAAGAAATAGGCCAGCTCCAGACAGGCGCTGCTGGCCGCGTCCGAGTCGTAGGAGACCCTCTTGGCGATGAAATAGGGCAGGGGCGAGATGGCATGGAAGAGCAGCACGAACAGGGGCCAGTACACG

a score=5766
s chr3           113054193 77 + 160039680 CATAGTCCTCCAAGGCACATCCCAGCATAAGAAAAGTCAGCCCAATTGCCCCACTGAAGGAGAGCGCCATGAGTGCT
s HiC_scaffold_1 148644286 77 + 233722169 CATAATCCTCCAGGGCACATCCCAGCATCAGAAAGGTCAGCCCGATTGCCCCGCTGAAGGACAGCGCCACCAGAGCT

a score=13440
s chr3           113147615 404 + 160039680 AAACTATAATACGGAGCACATAAAAAAAAAGCAGACTCA-ATTGATGTG---CTCTCTACATGTCTTTAATTTGATTCTTACAGTTTTGAGTCAGCATGGATTGCAATAAATGGGTCCTCAGCAGAGTTACTAATGGAAAAGTGAGCTTTACCATCACTGCCAACATTTACTTTAAGTCCAGTGCAATTGCCATCGACCTTATCTCCAGAGATGACATCACAGTATGTGCCAGCAGGAAGACCAGTCTGTAAAGTGGCTGACAAAGCCCTGGGGGAAAAAAAAGTTAATATTTAATTGGAATTCAACCCAGTTAACTGCAGAAAGATCCATTATGAATTCTCCACAGAATTGTAAGTCCCCGAACCTTGTGCTATAGAACAGTAAGAACTCAGAG-CTCAGTAAAAGAA
s HiC_scaffold_1 109887058 373 + 233722169 AAATTATACTACTTTCTacgtaaaagaaaag-aaactcgcACTGTTATGAGTCTCACTATAGGCATTTTATTTAAGATTTATAATTT-GTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACct--gagaaataaaatgtattatttaaattaaagTCAAATCTGGTGAACATAAG---------------------ACAGAA-----------AGAATCCTGTGCTATAAACCTTGAAGTACTCAAAGTTTCAGAAGAAGAA

a score=18554
s chr3           113149301 474 + 160039680 TAAAAGATTTTTCACATATGAAAAATATAAATGAACAGGGACAGAAAAGAAGCATCT----TAGAGTGCAATATTATACAGCCATTCCCGAGTCAATGTCCACTCACCAGTCATCATTGTTAAAGACAATGAAGCCTCTGTTTCCTCTGCTAAAAGCTACTTGGTTGCTGTTATTATCCCACCAGTTTGCAAAAGGCTGACCATTGACTACATTCCTGAAGGCAACCATGTTCCTAAAAAACACAATATCATGAGAAATGCTGGTACCCTTTAATTCAACAATTTAAAATAAAAGGTTAAACAACTTCCTTATTATACAA-GTTCTGAAGGGGACATTCCCACCTTATTTGACGCCATCTATGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGCATTAATGGTCACTTCTTTTGTTACTCCATTGTTATTAGGTGGTCCAATCCAGTCATTCTGATCCTTAATTATTGAAAGAA
s HiC_scaffold_1 109888385 460 + 233722169 TAAAAGACAtttcaattataataaaaagtaacaaGTAGGAAAATACAAGAATAATCAAGGATATAGTAGAATAAAATACGAATTTTTC---ATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAG---CAAGACTCAGATAAA-----ATGTCCTTCAACTTTACACTTGAAAGCACAATG--------CTTTAGCGTTAGAAAACACTTCTCAGTAAGTGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaattatgagaaaaa

a score=11911
s chr3           113182193 385 + 160039680 AAAAGAAACACACTCAACTGATGCTCTCTCTATATATATGTCTTTAATTTGATTTTTACAGTTTCGAGTCAGCATGGATTGCAATGAATGGATCCTCAGCAGAGTTACTAATGGAAAAGTGAGCTTTGCCATCACTGTCAACATTTACTTTAAGTCCAGTGCAATTGCCATTGACTTTATCTCCAGA--------------ATGTGCCAGCAGGAAGACTAGTCTGTACAGTTGCTGACAAAATCCTGAAAAAAAAAGGGGGGGTTAGTATTTAATTTAAATTCAACCCAATAAAGTGCAGGAACATGTATTATATATTATCCACAGACCAAGAAATTCCCCAACCTTCTGCTATAGAACAATAAGAATTCAGAGCTT---AGTAAGAAAATCCAAACACCA
s HiC_scaffold_1 109887084 360 + 233722169 aaaagaaactcgcACTGTTATGAGTCTCACTATAGGCAT----TTTATTTAAGATTTATAATTT-GTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACctgagaaataaaatg-----tattatttaaattaaagTCA----AATCTGGT----GAACATA-----------------AGACAGAAAGAATCC-------TGTGCTATAAACCTTGAAGTACTCAAAGTTTCAGAAGAAGAAAACTCAAACATCA

a score=17068
s chr3           113183937 465 + 160039680 AAAGTATTTCTCATGTATGAAAAATGTAAATGAATAGGAAAAGAAAGGAAT---TAATATTGTAATATTATACAATCCT--TCTTTAATCACTATCTATTTACCAGTTATCATTGTTAAAGATAATGACTCCTCTGTTTCCTCTGCCAAAAGCTACTTGGTTGCTGTCATTACCCCACCAGTTTACTAGAGGCTGACCATTGACCACATTCCAGAAAGCAACCATGTTCCTAAAAACATAATATCAAGTGAAGTCCCTGTTACAACATTTTAACAGTTTAAAATAAAAGGTTCAACAACTTCCTTATTAGACAAGACCT---GAAGGGGATTCCCACCTTATTTGTCACCAGTGATGTTCACAGACCCAGTCATTGCTACAAGTGGTGTCTGTGTTAATGGTAACAACTTTGGTTGCTCCATCGTTATTAGGTGGTTCCATCCAGTAATTCTGATCCTTAATTTTTGAAAGAA
s HiC_scaffold_1 109888386 459 + 233722169 AAAAGACAtttcaattataataaaaagtaacaaGTAGGAAAATACAAGAATAATCAAGGATATAGTAGAATAAAATACGAATTTTTCATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAGCAAGAC-TCAGATAAAATGTCCTT-----CAACTTTACACTTGAAAGCACAATG--------CTTTAGCGTTAGAAAACACTTCTCAGTAAGTGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaattatgagaaaaa

a score=9492
s chr3           113192872 149 + 160039680 ACATTGGTGTAGCAGGGTTCAGACTTGATGGTGACAAACACGTGTGACCTGGAGATATAAAGGCAGTTTTAGACAAACTACATAATTTAAATACAAAATTGTTCCCTCAAGGAAGCAGACCTTTCATTTTTCAAGAGGTAGattattat
s HiC_scaffold_1 109861187 149 + 233722169 ACATTGGTGTAGCAGGGTTCAGACTTGATGCTTCTAAGCACATGTGGCCTGGAGACATCAAGGCAATTTTGGATAAACTGAATAATCTCAACACAAAGTGGTTCTCTGCAGGAAGTCGACCTTTCATTTTCCAAGAGGTACATCAATAT

a score=9401
s chr3           113192872 148 + 160039680 ACATTGGTGTAGCAGGGTTCAGACTTGATGGTGACAAACACGTGTGACCTGGAGATATAAAGGCAGTTTTAGACAAACTACATAATTTAAATACAAAATTGTTCCCTCAAGGAAGCAGACCTTTCATTTTTCAAGAGGTAGattatta
s HiC_scaffold_1 109807296 148 + 233722169 ACATTGGTGTAGCAGGGTTCAGACTTGATGCTTCTAAGCACATGTGGCCTGGAGACATCAAGGCAATTTTGGATAAACTGAATAATCTCAACACAAAGTGGTTCTCTGCAGGAAGTCGACCTTTCATTTTCCAAGAGGTACATCAATA

a score=12057
s chr3           113249217 219 + 160039680 TTTGAGTCAGCATGGATTGCAATAAATGGGTCCTCAGCAGAGTTACTAATGGAAAAGTGAGCTTTGCCATCACTGCCAACATTCACTCTAAGTCCAGTGCAATTGCCATCGACCTTATCTCCAGAGATGACATCACAGTATGTGCCAGCAGGAAGACCAGTCTGTAAAGTGGCTGACAAAGCCCTGAAAAAAAAAAGGTAGTATTTATTATATATTCAA
s HiC_scaffold_1 109887141 219 + 233722169 TTTGTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACctgagaaataaaatgtattatttaaattaaagTCAA

a score=19564
s chr3           113251398 473 + 160039680 TAAAAGATTTTTCACATATGAAAAATATAAATGAAGAAGAAAAGAAAAGAATCATCT----TAGAGTATAATATTATACAGCCATTCCCCAATCAATATCCACTTACCAGTCATCATTGTTAAAGACAATGAATCCTCTGTTTCCTCTGCTAAAAGCTACTTGGTTGCTGTTATTATCCCACCAGTTTGAAAAAGGCTGACCATTGACCACATTCCTGAAGGCAACCATGTTCCTAAAAGCACAATATCATGAGAAATGCTGGTACCCTTTAATTCAACAATTTAAAATAAAAGGTTAAACAACTTCCTTATTAGACAAGA--TCTAAACGGGACATTCCTACCTGATTTGACGCCATCTGTGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGCATTAATGGTCACTTCTTTTGTTACTCCATTGTTATTGGGTGGTCCAATCCAGTCATTCTGATCCTTAATTATTGAAAGAA
s HiC_scaffold_1 109888385 460 + 233722169 TAAAAGACAtttcaattataataaaaagtaacaaGTAGGAAAATACAAGAATAATCAAGGATATAGTAGAATAAAATACGAATTTTTC---ATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAGCAAGAC-TCAGATAAAATGT------CCTTCAACTTTACACTTGAAAGCACAATG--------CTTTAGCGTTAGAAAACACTTCTCAGTAAG-TGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaattatgagaaaaa

a score=12057
s chr3           113281884 219 + 160039680 TTTGAGTCAGCATGGATTGCAATAAATGGGTCCTCAGCAGAGTTACTAATGGAAAAGTGAGCTTTGCCATCACTGCCAACATTCACTCTAAGTCCAGTGCAATTGCCATCGACCTTATCTCCAGAGATGACATCACAGTATGTGCCAGCAGGAAGACCAGTCTGTAAAGTGGCTGACaaagccctgaaaaaaaaaaggtagtatttattatatattcaa
s HiC_scaffold_1 109887141 219 + 233722169 TTTGTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACctgagaaataaaatgtattatttaaattaaagTCAA

a score=19564
s chr3           113284010 473 + 160039680 TAAAAGATTTTTCACATATGAAAAATATAAATGAAGAAGAAAAGAAAAGAATCATCT----TAGAGTATAATATTATACAGCCATTCCCCAATCAATATCCACTTACCAGTCATCATTGTTAAAGACAATGAATCCTCTGTTTCCTCTGCTAAAAGCTACTTGGTTGCTGTTATTATCCCACCAGTTTGAAAAAGGCTGACCATTGACCACATTCCTGAAGGCAACCATGTTCCTAAAAGCACAATATCATGAGAAATGCTGGTACCCTTTAATTCAACAATTTAAAATAAAAGGTTAAACAACTTCCTTATTAGACAAGA--TCTAAACGGGACATTCCTACCTGATTTGACGCCATCTGTGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGCATTAATGGTCACTTCTTTTGTTACTCCATTGTTATTGGGTGGTCCAATCCAGTCATTCTGATCCTTAATTATTGAAAGAA
s HiC_scaffold_1 109888385 460 + 233722169 TAAAAGACAtttcaattataataaaaagtaacaaGTAGGAAAATACAAGAATAATCAAGGATATAGTAGAATAAAATACGAATTTTTC---ATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAGCAAGAC-TCAGATAAAATGT------CCTTCAACTTTACACTTGAAAGCACAATG--------CTTTAGCGTTAGAAAACACTTCTCAGTAAG-TGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaattatgagaaaaa

a score=12057
s chr3           113314496 219 + 160039680 TTTGAGTCAGCATGGATTGCAATAAATGGGTCCTCAGCAGAGTTACTAATGGAAAAGTGAGCTTTGCCATCACTGCCAACATTCACTCTAAGTCCAGTGCAATTGCCATCGACCTTATCTCCAGAGATGACATCACAGTATGTGCCAGCAGGAAGACCAGTCTGTAAAGTGGCTGACAAAGCCCTGAAAAAAAAAAGGTAGTATTTATTATATATTCAA
s HiC_scaffold_1 109887141 219 + 233722169 TTTGTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACctgagaaataaaatgtattatttaaattaaagTCAA

a score=19564
s chr3           113316615 473 + 160039680 TAAAAGATTTTTCACATATGAAAAATATAAATGAAGAAGAAAAGAAAAGAATCATCT----TAGAGTATAATATTATACAGCCATTCCCCAATCAATATCCACTTACCAGTCATCATTGTTAAAGACAATGAATCCTCTGTTTCCTCTGCTAAAAGCTACTTGGTTGCTGTTATTATCCCACCAGTTTGAAAAAGGCTGACCATTGACCACATTCCTGAAGGCAACCATGTTCCTAAAAGCACAATATCATGAGAAATGCTGGTACCCTTTAATTCAACAATTTAAAATAAAAGGTTAAACAACTTCCTTATTAGACAAGA--TCTAAACGGGACATTCCTACCTGATTTGACGCCATCTGTGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGCATTAATGGTCACTTCTTTTGTTACTCCATTGTTATTGGGTGGTCCAATCCAGTCATTCTGATCCTTAATTATTGAAAGAA
s HiC_scaffold_1 109888385 460 + 233722169 TAAAAGACAtttcaattataataaaaagtaacaaGTAGGAAAATACAAGAATAATCAAGGATATAGTAGAATAAAATACGAATTTTTC---ATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAGCAAGAC-TCAGATAAAATGT------CCTTCAACTTTACACTTGAAAGCACAATG--------CTTTAGCGTTAGAAAACACTTCTCAGTAAG-TGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaattatgagaaaaa

a score=12057
s chr3           113347096 219 + 160039680 TTTGAGTCAGCATGGATTGCAATAAATGGGTCCTCAGCAGAGTTACTAATGGAAAAGTGAGCTTTGCCATCACTGCCAACATTCACTCTAAGTCCAGTGCAATTGCCATCGACCTTATCTCCAGAGATGACATCACAGTATGTGCCAGCAGGAAGACCAGTCTGTAAAGTGGCTGACAAAGCCCTGAAAAAAAAAAGGTAGTATTTATTATATATTCAA
s HiC_scaffold_1 109887141 219 + 233722169 TTTGTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACctgagaaataaaatgtattatttaaattaaagTCAA

a score=19564
s chr3           113349220 473 + 160039680 TAAAAGATTTTTCACATATGAAAAATATAAATGAAGAAGAAAAGAAAAGAATCATCT----TAGAGTATAATATTATACAGCCATTCCCCAATCAATATCCACTTACCAGTCATCATTGTTAAAGACAATGAATCCTCTGTTTCCTCTGCTAAAAGCTACTTGGTTGCTGTTATTATCCCACCAGTTTGAAAAAGGCTGACCATTGACCACATTCCTGAAGGCAACCATGTTCCTAAAAGCACAATATCATGAGAAATGCTGGTACCCTTTAATTCAACAATTTAAAATAAAAGGTTAAACAACTTCCTTATTAGACAAGA--TCTAAACGGGACATTCCTACCTGATTTGACGCCATCTGTGTTCACAGACCCAGTCATTGCCACAAGTAGTGTCTGCATTAATGGTCACTTCTTTTGTTACTCCATTGTTATTGGGTGGTCCAATCCAGTCATTCTGATCCTTAATTATTGAAAGAA
s HiC_scaffold_1 109888385 460 + 233722169 TAAAAGACAtttcaattataataaaaagtaacaaGTAGGAAAATACAAGAATAATCAAGGATATAGTAGAATAAAATACGAATTTTTC---ATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAGCAAGAC-TCAGATAAAATGT------CCTTCAACTTTACACTTGAAAGCACAATG--------CTTTAGCGTTAGAAAACACTTCTCAGTAAG-TGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaattatgagaaaaa

a score=13535
s chr3           113555756 472 + 160039680 ATGAGAATTTCTTTTGACAAATAATTTAAAGATAATCTTCTAAAATGTATCAAAATCCTGGGTGTAATTTTCTCATAATTATGTATGATTTTAATGAACTTTTTTTTACCTTTTCAAGTTTATTG------CCTATACATT-----TTATCAAATGTGATTGAAATAAAAAAATTAAATTCCATAAAAGACAGGAAATCCAAATTATT--GATGCTCTCAATATGTGtttattttaaattttatatttttGACTCTGCATGGATTGCAATAAATGGGTCTTCGGCAGAGTTACTAATAGAAAAGTGAGCTTTGCCATCATTGCCAACATAGACTTTTATTCCAGTGCAATTGCCATCGACTTTATCTCCAGAAATGACATCACAGTATGTGCCAGCAGGAAGACCAGTCTGTAAAGTTTCTGACAAAGCCCTGAAAAAGTAAAAAGTTAATTCTGT-AATCAAATTCAACACAGACAAATGTAAGA
s HiC_scaffold_1 109886915 462 + 233722169 attagaattt-ttttgaCAAGTAGAGCcatgtt--tcttttaaaacacatt----ttctatttgta---------tgattgtacataacttt--ttaattttttctgtttttttgtactCTATGAAGTCAACATGTATATTCACAATTTTGATATGTTATTAAATTATACTACTTT--CTacgtaaaagaaaagaaactcgcACTGTTATGAGTCTCACTATAGGCATTTTATTTAAGATTTATAATTT-GTGTCGGTGTGAATGGCAATAAAGGGATCTTCAGCTGAGTTACTAATGGAAAAATAAGCTGTGCCATCACCATTAACCTGGATTTTAAGTCCTGTGCAGTTGCCATCAATTTTATCTCCAGAAACAACATCAAGGTACCTGCTAGCAGGTAGACCAGTTTGCAAAGTTGATGACAGTGACctgagaaa-taaaatgt--attatttaaattaaagTCAAATCTGGTGAACATAAGA

a score=19757
s chr3           113558046 713 + 160039680 AAAAGTATAATAGTATATAATCCTA--CTTTAAGTGATATCCACTTACCAGTCATCATTGTTAAAGACAATGAATCCTTTGTTTCCTCTGCCAAAAGCTACCTGGTTGCTGTCATTATCCCACCAGTTTGCAAAAGGCTGACCATTGACGACATTTCTGAAGGCAACCATGTTCCTAAAAACACAGTATCATGTGAAAAGCTGGTACCCTTAAACAT--CAATTTAAAATACAAGGTTAAACAATGTTATTACACAAGATCTGTAGGGGACATCCCCACCTTATTTGACGCCATCGATGTTCACAGATCCAGTCATTGCCACAAGTGCTGTCTGGGTTAATGCTCACTTCTTTGGTTTTTCCATTGTTATTTGGTGGTCCAACCCAGTCATTGACATCCTTAATTAAAGGGAAAAGCATC----AGGTTTTTAACATGCA-----------------TGTTGACTTCCATGACACTA--AATTCAAAGTGTTCTGTTACTTGA-ATGTCTATAGTATCTACTTAGTATCCAACTCCTTCAGTATTTATACAGACAACTACCGATGAGTATTTACTATTTCAGTGTATATAACATAGTTATCTTAGGT--CATATTTCACAGAATTATACATTTTTA---TTTATTCAGTGTCTTCCAT-GCAACAGTTTCTTAATAGCTCTCTTCTTTAACGTCAGTAAAATGGCAAAATCTTTAGCATCAGAAAGAC-CAGGATTTAAGATCAGGCT
s HiC_scaffold_1 109888441 696 + 233722169 AAGGATATAGTAGAATAAAATACGAATTTTTCATTGGCATCTACTCACCAATTGTCATTGTTAAAGACAATGaatgctttgttttctcttccagaaGCTAATTGGTTGCTTCCATTATCCCACCAGTTTGAAAAAGGCTGGCCATCAGCTACGTTTTGGAAGGCGATCATGTTTCTAAAAGCA-AGACTCAGATAAAA------TGTCCTTCAACTTTACACTTGAAAGCACAATGCTT--TAGCGTTAGAAAACAC--TTCTCAGTAAGTGTGCCCACCTTATTTGACACCAGCAATGTTCACAGACTCAGCCATTGCCACAAGGTGTGTCTGCATTGATAGTTACTTCTTTGATGACTCCATAGTTGTTTGGTGGCCCCATCCAATCATTAACATCcttaatt-atgagaaaaacacCATAGATGTTTTGAGCACTCACACTTCTATCTTCCTTCTGCTTTCTACCAACCAATTACCAATTCAGAG----CTACTACTTAATATTTGCATAATCTTTATTCAGAATCCAACTT------TACTT-----------TGCTGA----TCCTTACCATGTCTGTGGAC------TCCTTTTCTACAGTGCTATAGTTC----AAGTAAACATGATAAagttttatgctgtttttctaATAACAATAGCTTCTTAATATCATTACTC-----AATCATTGAAATGGCAAGATCCTTAGAGCCTGAGTGacaaaagaattagaaatagACT

a score=29087
s chr3           113631603 623 + 160039680 CTGCAACATTTTGACCCATGATGTGCTTCTGATGTACATCTGCATTGAAA----TCCTTGCTTTCAAAATAAAAACCAGGGAATTGTTTAGGTCTATGAGGGATAGACAAGCCTCCATTCACATCTCCCTTCAGGGTACCA----------------CTGTAATTTGGGCAAGACCTGCATCCAAATACCAAGTGCAGGTGCCAAGCATTGATAGTCTTATCAATGCTTTCCACATTGTATTCATCTTTAGTCACCTCCACCTGACCTTCATAGATCTTGTACATTCCAAACCTATTGCAAAGCCTGTGGGCCAGCAGCAGGCCAGTATACTAGGCTACAGCATAATTGGTGAGGCCAACTTTCAC-CTGTATTTTGACAGTTCATATACATATGCTGTGCAGCCTATCATATCCTCCTT-TTACAGGTATATACAATC-GAGTAGTGGCAT---------------GAACTACTATCTTATATTTGAGCA------GCTTAATTTTGCCATTTATCAGCAATCATTTATGAGCATGGTAGTCATTTTTACCTTCTGGTAGCCTTCTAAATCTCACTTGGTATCTCTAAAGTAGGCTTTATTCTTGACAACTTTGGTAAACCTCATTCTG--TGGAACAGAAATCCAAAACCACAGATCTG--CAGACCTG
s HiC_scaffold_1  94281013 661 + 233722169 CTGTGACGTTCTGACCCATGATGTGCTTCCCATGTACTTCTTCACTGAACGAACTCCTTGTTTTCAGAATTGTAATCAGAGAATCATTCGGTACTGTGAGGGACAGACAAACCTCCACCCACAACACCCTTCAAAGCTCCAAAAACTTTATTGCCAATTGTAGTTCTGGCAAGGCCTGTACCCAAATAGCAGGTGAAGACACTAAGT-------TTACCATCAATGCTTTCCACAGTGTATTCATCTCTAGTTACCTCTGCCTGGCCTTCACAGATCTTATACATGCCAAACCTACTGAGAAGCCAGTGGGCCAGCAGCAGGCCAGTACAATATGACACAGCATAATTTATTAAGCCAACTTTCACACTGTATTTTGGTAGTTCATGTACATATGCTACGCAGACTATTAGATCCCCTTTAATATGGGCATAAGTGATCTGAAAAATGGTATCTCTGTTAGTTATACAAAGTATCATcttgtgtttaggtgtgttgTACTTATTTTTGTCCTGGATCACCAAGCATTTCTCAGCATAGCAATCAGtttttccctcttgt---cttctAAACTTCACTTGGTATCTCTTAAAGAGGCCTTATTCTTGACAACTTTAACAAAACCCATCCTGTATAAAATAGAGACCTGCACCCATGGCTCTGCACAGACCTG

a score=16053
s chr3           113631604 540 + 160039680 TGCAACATTTTGACCCATGATGTGCTTCTGATGTACATCTGCATTGAAATCCTTGCTTTCAAAATAAAAACCAGGGAATTGTTTAGGTCTATGAGGGATAGACAAGCCTCCATTCACATCTCCCTTCAGGGTACCACTGTAATTTGGGCAAGACCTGCATCCAAATACCAAGTGCAGGTG----CCAAGCATTGATAGTCTTATCAATGCTTTCCACATTGTATTCATCTTTAGTCACCTCCACCTGACCTTCATAGATCTTGTACATTCCAAACCTATTGCAAAGCCTGTGGGCCAGCAGCAGGCCAGTATACTAGGCTACAGCATAATTGGTGAGGCCAACTTTCACCTGTATTTTGACAGTTCATATACATATGCTGTGC-----------AGCCTATCATATCCTCCTTT-TACAGGTATATACAATCGAGTAGTGGCAT----GAACTACTATCTTATATTTGAGCA---GCTTAATTTTGCCATTTATCAGCAATCATTTATGAGCATGGTAGTCATTTTTACCTTCTGGTAGCCTTCTAAATCTCACTTGGTATCT
s HiC_scaffold_1  94884437 523 + 233722169 TGCAGTGTTCTGGCACATGATGTGCTTAT--TATATTTCTGCTTTAAATTCCTTGCTTTCAGAATCATACCCAGGGAGTTTCTTGataatatgagaaacaaacaagGTCCC---CAAAACTTTATTGCTAGTA-----GTTGTTCTGGCAAGGCCTGCATCCA--TCCCAAAAGTAGGTGAAGACCCCACATTGACCATC---------------ATGCTGTGTTCATCTCTAGTCATCTCCATTTGCCTCTTGTAGATCTTGTCCTTGCCAAAACTATTGAGAATCCTGTGGTCCAGTAGCAGAACAGTCAAATACATTGCAGCAAAATTTATCAGGCCAAACTCATACCATGTTTTTGTAGTTCATGGGCATATGCTATGCATTTGTCATGTAGATAAACATATCCCCTTCCATACATGTGTGTACAACC------TGACATACTCAAACTATTATCCTATATTTGGACATGTAGTTACATCTATTGTGGGTCACTAAATGTTTCTAAGCATGATAATCAGTTTTAACT-------GTCTTCTAAATTTCACTTGACATCT

a score=28996
s chr3           113705597 935 + 160039680 ACCTTGTAGAGTGAGGTTGGAATTTGATATTTACAAATATGTTTGTAAAGTAGGTCAGTGTGGAAAATAGAATATCTTCATGCTTGTTAAGATTGAAAGTGGGTATTTTGAGTCCATTTCATTTCTTCCTAGAAGAACATAGTTGAAAACTCCAGTTTTTCTAGGACATAGTTTTAGGTTTTGTCTTACAGCCACCACTCCTAATTAGAAGCTATGTAAAGAG-AAAATAAAGCACAGAGCCTACCAG-GCCTTTCATTTGTACGTGTGGGACTGGCTCATGCtttttttttttttttttttttttttcttttGGAACTCAGCTTTACCCAACTGGTGTTTTACTTGGCTTGCTATCATTTTTATTTAAATAAATGCAGAAACTTAAGAAACATAAAATAGAAGGCGCTCTGTGTTAAGCACAGTTCAGGGGAAAAGGCTTAAATTTTTAGCCATATCTAGTCTGACTATTAGCTAGAAGTTAAATAGATCTTTTATAGTCCAGTCAGGGAAACAAGACTGAA-AATTATTCTCCTGGGCTCTGTATAACATCCAGTTTTAAACATTTAAAAATATTGAAGTCAGAATATTTTGTAGCTATTTTTAATATATGATATCTCTTTTAATCCATCAAGTAGAAAATATACTTTTAAAGTGAACAGTTT--TATGATGATATTAAGGGAATTAAAACATAAAATTATGGGATATAAAGGGA-AGCTACATACCAATTTTAGGTCCTTAATTCTGAAAATGCTAAGAAAAGAATG-TGAACTTTATAGATGCTATGTTCTAATTTGGAATAGTAC-GTCAACATTGAAGATA--GCACCAACATTTGAGCAATAAAATTTTATGCATATATTCAACAGA---------ATTTATTTTCAGTACATATCATTGATCATTTATTTTCCTTCAAAATATTTTTTGTGTTTTCTtttttttta
s HiC_scaffold_1 109706312 902 + 233722169 ACCATAAAGAGGACAGGGGAAATTTgatattcacaaaaatatttataaaataggtCAGCCTGGAGACCAAATT--TTTCATGCTTGTTAAGAATGGAATAAAGTATTTTGAGT-----GCATTTATTCCTAGAAGAACAGAGTTGAAATCTTAAATTTCTCCATCACACAGTTTAAGGTTTTGTTTTACAGCTACCTCTCCTAATTAGTAGttaagtaaagagaaaaataaagcttcGAATCTGCAGGCGCCTTTCATTGGTACATGTGGAACTGGCTCAAG---------------------TTTGTTTGCTGGAATGCAGCTTTACCAAACTGGTGTTTTACTTGGCTTGGcaacatttttgtttaaataaatgcagaaatttAGGAAACATAAAATAGAAGGCTCACTGTGTTTAATATATTTTGGGAGAGAATACTTAAATATCTTACTATATCTGTTTTAAATATTAGCTAAAAACTAAAT--ACCTTTTGTAA---ATTCAAGTAAATAGTACTGGACACTTACCATCTTGAACTTTATATAACATATGTATttgtaaatgt-aaaatatctaCAGTGCtagattttagaaata-tattgatatgc----tttgttttggtctgtacactataaaatata-----aaaaagtaaagtttCATATAGTAATTCTAATGtga-taaaaca-aattttcttgaaaataagagAATTATTATCAAATAATTTT-GCTTCTCAATTTT-ATAATGCCAAGTAAAAGCTATTGAACTTCATAAA-ATTGTGCCTTCAT---AGGTGGCACAATTAGCATAACGGATACTGTGCCAATATTGGATATGTAAAACATTGGGCATATGTTCACCacaaagaaaattactttttttgagaATATAACTTTGACAGTTTGTTTTCATACAAAATTATTATACTGTTCCTCTTTGTTCTA

a score=27538
s chr3           113728649 592 + 160039680 ttttGCTTTGATATTTAGAAACAAGTTTTATTTAAGATCTGAAATATAATTCCTAAAATATCAACTTTTC-AGAAAACTGTGGCTACACAATAATGCATTGCCTCTATCATGTTAGAACGTGCATTAGACTCAAATACAAAAACTAGGAAACAAATCACCATCCTTCAACAATTTGAGGAAAGATAGAATGAATGCCTAAGGAACAACAAAGATGGACTTGCAGAGGATGGGCTGTTTACGATGTCAAGCACCATTAAAAAAAAAAAAA-----------AGCACAAATGCATGG--GTTTCCAGGTATATACATTAAGTTGAACCTTTGGCACTAGGAACCAGGACATCTCATCACGTAGCA-TTAACACATATTAGCAAACTGTGTAGTGTCAAAGGGATAGAACCATCAGCATTC--AAGCAATGCTGTCAACTAGGCAATAAAATGGTCTACTGAATTTCTTCTTTGTCTAATTACTCATACACTGGTAGCAACTTTGAAAT--------GAGGAAAGGAGCTGGGCACTCCTTTTATTTTCTGTCTACAACAGAACAGGAAAACAAACTGAAACATAAGCCCTGTTTTACACTGATAGTTTTAAAGAACATC
s HiC_scaffold_1  83186017 588 + 233722169 tttttttttaatttaaagaaaaa---tttattgaagatttgaaaaaacattcctaaaagtTTGACTTTTCCAAAAAGCTGCAGCTACACAAT---GCATTGCATCTATCATGTTAAAACATGCATTAGATACAAATACAAAAACCATG-AACAATTCACCATTCTTTAACAATTTGAGCAAAGATA----AAATGCCTAAGGAACAACATGGAT-GACTTGCAAAGGATGGGCTCTTT--------aagcaccattaaaaaaaaaaaaaaaaaaaaaaggagcacaaATGGATGAGTGTGTTCAGTTTTATACACTGAATTGGACCTTTGGCACTAGGAATCAGACCATTTTATCATATAGCATTTAACATGTATTATAAAAGTGCATAGTGTCAAAGGAATAGAACCACCAGCATTCAAAAGCAGCTTTGTCAACTAAGCAATAAAACACTCTACACCATCTCTCTGTTGTCCATCATTGAATACACTGGTAGcaactttgaaatgaaaaaaagaaaaaaggagctgta-accccttttattttctgttt-------aaaaatcaaacaaaacg-aaCATCAATTCTGTTGTACACTAACATCTTCAAAGTGCATC

a score=24456
s chr3           114770873 706 + 160039680 AGCAAGGCATTAGCCACTTCTATAAACACCACCCCCAACCCCAAACCAAG------------CAAATCTAACGTTAGAAACCCATAGATGATCTCTTTCCTCCTTTTCATTAATTTTTCAGTAAAGAAAAATTTCATGTATAATTCCAAAGAAAA--------CATGTACTCCTTGCACATAATTAAAA--ACTGGTCATAAACTATATCCCGAATGCAAT---ACCTCACTTTCTGTATGAAGATCAACTTCACCAGCACACTGCATGGGACTAAAAAAGTTGCTGAACTTCTCATTAAATTTTTTCTACTAGTTCCTTTAAGGGGTTTAGCCACCTTCCTTTCACCTACAAGTAAGAGGCAAAACAAAACG-ACACTGAAAGCAGTACTATCCATTCTGATATAAAACTTTACACAAAACAAATTCTATAACAAA-GTCAATTTGGTTATAAAAA------------------------------------TAATTTTTG---------------------------------------------------------------------------------TTTCAG---GAGAATAAAATTTATTTTGTA-TACTTTGTATGCTCATCCCATTCATGGCAAATACATAAGGA--------------TAAAAATTACCTGTGAAGTGTTTTCCCTGTATTCATCTAGTTCAACTTTA-TCCCCTTTAGTTCTTTGGTTAACTGCTGTATTTATATTTCTCTTTTTGTGTACTCCTCAACCACCT-GCTCAAAAAAAATTCTTTAAGAAAAATTTATCAAAGGATAAAATTATATAGAAATTTGCATCAATTAAACTACTAGCTAAAAA
s HiC_scaffold_1  59692505 853 + 233722169 AGTGAGGTACTGGTCACTCATCTC--CAACATCACCAATCTGGAGGTGAGGGGCGGGGGGTGCAACCCTAATG---GAATCTCCTAGgtggttttttcctttctctggat-AATTTTACAGCAAATAAGACT---AGATATAACTCTAGggtaaatatatttacatgtacTTTTAGTAt-caattaatattatttaataagaaaCATATTCAAAGTGCAATTTTACCTCATTTTCTGTATGGAGATCAACTTCACCAGCACACTGCATGGAACTAAAAAAATTGctgaatttttcatt-aattttttcgaCTAGCTCTTTTAAGGGATTTAGCCACCGTTCTTTTACCTAAAAATAA-AGgcaatataaaatacattttagaagtattttta--aatcctgatacaaaaCTTTACATATGACAAATTTTACATCAACTATCAATCTGGTTGTAAGAACatactttttctttccctttcatttttaaaattttttaatttttgataccaagaatcaaacgcaagaccttgagcttgccagggaggtgctgtgctgctaagctatatccttgggcccattttttcttttagataaaaaaaaaatttcgtTTTGTATTACTCTACATGTCCATATCAGCTATgataagcatatgaaaaaaaagacaaaaatttgaaaattacctGTGAAATGTTTTCCCTGTATTTGTCTAGTtcaactttctttccctttaattcCTCAGTTAACTGTactatttcttcttctctttttgtgtATTCTTGAACCACCtggcaggaaaagaaatatttaagataaatCTGTCTGaggataaaattatataaaaatttgcaTCAATTAAATTAT---CTGAAAA

a score=33967
s chr3           115139947 1337 + 160039680 TTTGTTGTTAATGTTATTTATTTGTGTTTTACCAAAAAGTAAAGTAAACATTTTACCAGGAAATCAACCATAGAAATGAATCACT----TATGTGATAATGATGTAAGAA-CATTTCATATTTCTGATACAGATTCTAAGCTAAATTTTATTGCCTTTGTCTCTAGGTATTAGAAATTTTATATATTGAGTGATTTAAAGCAACTAAATCTTTATCTAAGTGTTAGATTACTTGCTGTCACCAAATAAGTATATTGTGACTCAAATAACCGTAAAGAACTTTGATCTGTTGCCCTGTCCATCACAGGACATTAGGATGGGTTTCTT-AGACAGTTTGTCACATTTCCAATTAACATAAATGTGTTTCAATCATCATATTGCACACATGATGAGGAGAAATTACTTCAGTAATTGTActttgcatttctatagcaactttcatttaagaagttcaaggcactaatttaattaaacctttgaatgttctccacgaggtaggtgttattatttccatttgacaaa-gacataaatgaaaaatgaagtcacaaaaagattaactcacttgcctttagcaacacagtgagt-tagaggggaggtcagaatGAGCACTAAAGATCCAGATAGAC-ATTCTCTACACTCTGAACTAAAGTCTATTTTTGCTCACACTTTTGATAGCAT-----------------------------------------------------------------------------------------------------ATGGACTAGACTGTTACCTGGATTTCGATCAGCAGGGATTTTAATTCTCTATAACCTGGAAGAGTTTAGACTGTAGATTATTC---AAAGGCACTTTCTGGAATTCACTATTTTATCTCATTTTCTGGTATGGTAGTCATTTGGAATAAAATTTTGTACAGTTTTCTATCATTTTTATTCAAACATGTTTTAAACAGCATAtttttctttttctttttctttttcttttcttttcttttcttttcttttcttttcttttctcttctttATTTTTTAAAATAGAATTAGATAGCCTAATCTCAGGAAGCAAGCCTATTTGCTTTTAATTAAGAAATGAATTGTACATCAAATTTTCATGGGAAGTTTTCTGAATCTCTACCTAATCTTCTTTTAATGAAATGGAC-CAATGACTGCTCTGTTTGCATTAGTCACAGTACATGTTGTATATGAATTTGAGGAATGTACTGAGAAAACAACATTAAAATATACCAACAAGTGTTCATTATCCAGGGGGTGAATATTAAGAAAGATTTTTCAGAGGCAAAACATCCATTACTATATTAATTCACTATGTAGAATCA-CATACATTTAA-----AACAATTTCTTGCCTTTGTTTTTCAGATTTGCAACCAAGAAATCTTGCA-GTCTTTAAAAAAATACTCAGAAATATC
s HiC_scaffold_1 108250845 1289 + 233722169 ttttttttttttttagtttgcttttgcttttgtacaAA--AAAGTAATGAATTTAGCAATAAAATAGTTGAAACACTGAAACACTGTCCTATAAG-TAGTGATATAGGAGGCACT--ACCTTTCAGGTTCAGACTAAAGAtcaaattttattgttattaccTTTAGATATTAGAATTTTTATAGATCAAAGGACTTGAAGTGATTAAATCTTTTTCAGTGGATtcaattttttattgttattaaataattaaattatgatCCAATTCATTATGAAGAGACTCGACCTATTGTTCCATGTAACATAT-CCATAAGGAAGGGTTTCTTTAGGCACTTATTCACTTTTCCAATTAAAGTAAATGTATTTCAATCATCATATC-caaacagcaaaaggaaaaattactTCAACAATGGCACTTTGTATATCTACAGCAACTTTCTTTTAAGAGGCTCAAAGTAGTAATTTAATTAAACCTTCAGA-GCTCTCTGTGAAGTAGgtattaaaatttccatttgacaAAAGATATAAATGAA-------GTGGCAGAA-GATTA-CTCAC--------------ATAGTGAGTACAGAGGGGTGG---AGATTAGTACTCA---TCTCAGTAGACTGTGCTCTGTAGTCTGAGCTA-----------------------------CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATG-------------------TTTAAAGCAGAgggaattttaattctttatggaTTAGCAGAATCTGAAGcacagattatttttaaaaaaatgattcttATTTGCATTGTTGTATCTCACTTTCT---ATGAT--TCATCTGGGACAATTTCTAGAGGTATTTTCT-Taccttttattcaaatattttttat-caacatattct------------------------------------------------------ctcttttttgtgt----------AATTATGCACCTTAATCCCAGAAAGCAAGACTGTTTGCTTTTAATTAAGGAATGAATTGTGCATCAG--TTTCATGGGAAATTTTCAGAG-CTCTATCAAATCTTTTCTTAATGAGATGGATGTGATGGCTGTGCTGTTTGCATTAGTCAGAGGACATACTGTACATGACTTTAAGAAATGTATTG----AACAAAGTTAAAATGTACCAGGAAGT-TTCATTATCCAGGAAATGAATATTTAGACA---TTTTCAAGGACAAAAAGTCTATCATTATATTAAATTACTTTGTGGAGTCATCATATTTTTGgtgttcagcagttttatatcattgtttttaatctttccaAT--AAGAGGCTAGCATATCTTTCAAAATATAGTATGAAAAATC

a score=5620
s chr3           115508740 187 + 160039680 CATGAAGCTATTTCACA-------TGCTGTCATTTCACATGCCTGGCAGCACAGATGCTTTGCCCGT----ACCAGAGTCACCACAGACACATGTACAATGTACTGAGCTCTGATATCATGATGGCTACCATGTCACTAAGAAACAGAAAATGTTCAGTTCCATTATAATCTTATACATGAT-ACAAAACCTGTTACAT
s HiC_scaffold_1  49960554 195 + 233722169 CATGGAGCTATGTCTCTAACCTTTCGCTGTGCTTTTGTATGCCCGGCAGTGCAG----TATGCCTGTTTTCACCAGCATCACCACAAGCACATGAAAGATGCATTGAGCTCCAATGCAATGATAGCTAGGATGCTGTTAGGTGATAGGAACTCTTTGGCTACATTGTAAAGTTATGGTAAATAACATTATCTGTTGTAT

a score=6481
s chr3           115508749 201 + 160039680 ATTTCACATGCTGTCATTTCACATGCCTGGCAGCACAGATGCTTTGCCCGTACCAGAGTCACCACAGACACATGTACAATGTACTGAGCTCTGATATCATGATGGCTACCATGTCACTAAGAAACAGAAAATGTTCAGTTCCATTATAATCTTATACATGATACAAAAC--CTGTTACATATGTGATCT-TTATTGACCAAAAT
s HiC_scaffold_1 183370822 195 + 233722169 ATTGTGTGTGCTATACTTTCATATGACTGGTAGCATGGTAGGTTTGTTTATACCAGCATCATGACAAATATGTGAATAATGTGTTGCATTATGGCATTATGATGGCTACAACAGCACTAGGCGACAAGAATTTTTCAGCTCTGTTATCATCT---------TACAGGACTGCCATTGCATCTGCAGTCTGTCATTGGCTGAAAT

a score=23364
s chr3           115714693 1335 + 160039680 CTCACAACCCCCTACCTCGCTCAAGCCGGACGAAGCTGCGTCCGCAGGACTCTGGGTCTACACCGCGCGATCCGCATCTTGCTGCTGTCGGCGACTGACGGCGACCAGCTCACTCGCAAAGTTCCCT------GAGCTGGGGTCCCCTCCCTCCTCAGCGGTGCACTCCAATGGCCAGCCCTGCCTGC-GCTGCCCGCACCACTTTTGCAAGACGAAGTCTCTGAGCGCCCCGCCGAGGCTGGGTGGCTC--CTCTAGGAA-------GGGACTGGGAGGGGTTAATGCTTTTAACTCCTCCGCCCTCTGCCAGCGGCAGGGGGCCCCTCAGGGTCTGGGCTGCTAAGAAGCAGCCTCCCAGAAAGATCTGGGGCAGAGTGACTAAAATAAAACCAAATGAATAGGAGCCCCTCCGCCCCAACCAGCAGAGAGAAGGGAAGAGAAGGGGCGGAGCCTGGCAGCTCCTAAATTCTAAT-------TCACA------CAGCTTCCCGCAGTCCCCAGCGCGGGACGGACT---CTGAAACTAGGCA-----------TGGGGATCCCTGGGAAAACTTTTCTTCGTTAAAAATCTTAGAGGACAGAGGACAAGCCTGCACTTGGTAGAGGAGCTTTCTGGTCC----CAGACCCCACAGCCCTGAG--GATCCGTGTAGCCCGA----GTGGTCCGGTGCCCTGGGGGCCACTTCCACGCGGTCAGGGGAAACCCGAGCCACTGCCCGGAGAGCCGCAGCCACGCCGCAGAGAGGGGATCCTGAGAAGGT-----------CGGAGGAG--AGCAGCCCCGAAGTACTGAAAAGCTTCTGTCCTCCACCTCCTCTTCCTCCACCCCCTCCACTCCGATCCTGGTGAAGCCTTGAAACTTGCGGTCTGGTGGGCAGAAAGTGGCTTTCCCCGGGTGCACGGTGAAGTGGGCCAGTGCTGTGCTTGATGTTGGACCGGGGGTTCCCCTCTCTCAGCTGACCGCAAAGCCAGGCGGTGTGCCCCAGATTCTGGGAAGCTCAGAGGCCTTTGAGGAGGTGGGCTGCTGCCCTGGCCTCAGAGATTTAAACAATCCAGCAGCAGTTCAGGAATGTCCACAGGGGAAAGAGGTTGCCTGTCCTTTCACTGGCCAGTGCCTACAGCCCCCTGCCTAAAGCTGGACCCCTCTTCTCTCCCTGTCTACGT-AGAGATAACTAAGAGATCCCCAAATCTAAGGAATTGCACCTTGTCCA-CATTTTTCTACT-GTTAGATAATGCTAGATTGAGGCT--GAAGAGGCCTTGGTCAGATTTGTCTGAGTAGCAGATGGAGG---CCTTTATGCCTTGTCTGTCTGTCCTTCTGTTAAAAAGTG-GTTCCACCCAAGTCCCCTGTTCTCACTGCCTTCCCACCC
s HiC_scaffold_1 176867140 1243 + 233722169 CTCAGAAACTGAAGCCTCACTCAGTTAGGA---GGCTGCTTTTGGAAAGCTCTTGGTCTGTATTGCTC--TTGGCATCTTGCTGCTTGTG---------------------CTTTGCGAAGTTATTTTATTAAGAGTTTAAGTCCCCTCACACTGCACCC-TGCACTCCAGTGGCCAGCCCTGTTTACTACAGCCTGCATCTGTCTT---------------------------CAAGGCAGAGTGACTTAGCTTTAGGGACAATTAGGGTGATGGTGGTGGTTAATAGTTTAAGCTTTTCCCGCTTTTTCGAATCCTTGGTGGCCCT---AAATCTGTGCGACTGAGAGGCATCTTCCAGGAAAGATGTGAAGTAga------agcaaaagacaaaacaaaaa--------------caaaacaaaacaaaacacaggagagagggaagggggcCTAATATCCCCTAAATTTTCATGTATAAATCACATCTCATCAGCTTTCTACAACTCCTGGGTTATAGAGGATTTACCTAAACCCTGGAAAAGAGAGGAGATGGAAAGCCTTGG--AAACTTTTCTC----AAAAGTCTTGTGGGACAGCAAATGA-CCAGCATCTAGTAGTGCACCTCCCTGATCCTCCCCAG---CCACAGCCCTGGGAAGATCTGAGCATCTTGAACTGGTGGCAGGGTGCCCCTTGGACCACTTCCA----GTAGAGGGAAATGGGAGCTGCTGGCCA---------AGTTCCTGTGCTCTGGGGAGATGCTGCGAAGGAACAGTGAGGTATGGAGGAGGCAGCAGCCTCAGCGGGTAGACG------TGTACTCC------------------CCTTTAACCTTGACCCTAGTGAAGCCCTAAAACTTGTGGTCTAAAGAGCGGAAAGTGGCTTTTGCCAGGCACACAGTGAAGTGGACCAATGCT-------------------AGGTTCTCATTATTCAAATGGGTAC-AAGTCAGGCTGTGTGACCCAAATTTTGGCCAGTAATGAGGCCTTTGAGGATGTGGGCTCCTGCCAGGCACTTGGAGATTTAAAAAGTTTGG--GCAGCAAAGGAATTTCCAAAGGGAAAGAA--CTGTGTGGCCCAGCGCAGCCAAATGCCTACAGCTACCCAGTTTAGGGTGGTGCCCCGCTCTGTCCCCCTCTACCTAAGAGGCAACTTAGAGGCGTCCAAACCTG-----------TTTTTCCAGCCCTTTTCTCTTAGTTACTTAA---AAAGGCGAAGCCCAGAATTGACCTTGGTCAGATTTGCCTCTGAGGCAAACTTAAGGACTCTTCTGGCCTTACCTTTCT---TcacaattaaaaagaattttctgccCAAAG--CCTGGTCACACTGCCTTCCTACCC

a score=6569
s chr3           116224057 354 + 160039680 TAGGTTACTGTTATGGTTTGGATATGAAACATCCACTGAAGGCTCATACTTCAAAAGGTAGGTCCTCAATGTAGCAATGTTCAGGGGTGGAGCTGAAATT---GGAGTGATTGGACCATGGCAACTTTAGCCTCATCATCGGATCAGTCCACTGATGGGTCCATGACTTTATAG-GTTTTGAGgggagatgaaaacttaagagacaggatgtagtgtaaagaaaggggccattcggggcatgcttctacaggttatctcttgcccagatctcctc---cttccacttttacttactgaatggcatgaggcaagcctcttc-ctccaccacccactcctgctgccat-atcttcacctccacca
s HiC_scaffold_1 132093673 340 + 233722169 TGAGTTACTCTTGTGGTTTGAATTTCAAACGTCCCCCAAAAGGTCATGTGCTGAAAGATTGATCCTCAGTGCAGCAGTGTT-AGAGgcagggtt----tttcagaggtgattG----------------GTCTTATGAGTTAATTAATCCATTTGTGGATTCACAACTTAATGGAGAATTGGAAGGTAGTGGAATCTTTAGTGGATAAGCCTACTTTGTGAAAGGAGATCATTATGTACACACCCTTGAAAGGTATAGTTTGTCTAGGCTCCCTCTTTTTTCCCTGTCTGCATCTTTGCTCCCATGAAGTAAGCATTTTCATTCCACCA--TGCTCTTCCTGCCATGATATTCTGCCTCACCA

a score=6136
s chr3           116224065 273 + 160039680 TGTTATGGTTTGGATATGAAACATCCACTGAAGGCTCATACTTCAAAAGGTAGGTCCTCAATGTAGCAATGTTCAGGGGTGGAG---CTGAAATTGGAGTGATTGGACCATGGCAACTTTAGCCTCATCATCGGATCAGTCCACTGATGGGTCCATGACTTTATAGGTTTTGAGgggagatgaaaacttaagagacaggatgtagtgtaaagaaaggggccattcggggcatgcttctacaggttatctcttgcccagatctcctccttccacttt
s HiC_scaffold_1 103515861 265 + 233722169 TGTTATAGTTTGGATTTGAAATGCTCTCCAAAAGCTCATATATTTAAGACTTGGTCTTCAATGTAGCAATGTTCAGAGGCAGAGACTCTGGAAC----ATGAATGAAGCAGAAGCTCTCTGACTTCGTTAATGGATTGACTCATTTATAGAGTCATAACTGAAC---TTTTAGGGGATGTTGAAAGCTTTGGGAATGGGAC-CAGTTAGAGGAAGTAAGTCATTGACCATGTGTCCTTGAAGGATGTATTCTTCCC---CCAGTTACGTCCACTTT

a score=6790
s chr3           116224068 279 + 160039680 TATGGTTTGGATATGAAACATCCACTGAAGGCTCATACTTCAAAAGGTAGGTCCTCAATGTAGCAATGTTCAGGGGTGGAGCTGAAATTGGA--GTGATTGGACCATGGCAACTTTAGCCTCATCATCGGATCAGTCCACTGATGGGTCCATGACTTTATAGGTT--TTGAGgggagatgaaaacttaagagacaggatgtagtgtaaagaaaggggccattcggggcatgcttctacaggttatctcttgcccag-atctcctccttccacttttacttactg
s HiC_scaffold_1 209451235 277 + 233722169 TATGGTTTGGATGTGGAGTGTTCCCCAAAGGCCGGTGTGTTCAAGAATGGGTCCCCTATGTTGCAACGTTTAGAGGTGGAACTT---TTGGAAGGAGATGAGGTCATTAGGGTTTTAAct---tcaatggattaatccattgatgcaTCCCTAATTTGATGGCACAAatgggaggtgatggaaacttAGGAGATGGGGACCAGGGTGAAGAAGGCAGGCAATGGCAGTGTTACCGTAGGGACTGCATCTTTCCCGGCACCTTCTCCAt-ggctttttctctctg

a score=9086
s chr3           116370966 323 + 160039680 GTCATACCCAGATGACCTTAGTTCTCAACTATTTTCGGGTTGTAGCATCAGTTTCCTGGACATCTCT-TTGGAAAGAAATTTAATTGACTCAGAACTGGCCAGAATGTTGATTTCAAGTCACAGTGGCAGTGTCACAGGGGCAGAACCTACCTGGGGAAGGTTGTTCTC------TGCTTCTTTCCCTCTTCTGAACAACTAATATATTGAGCAAAATAACAGAAAATCCACTGCTAACATTCAAGG--CTACTCTGAGA-AAATGTATGAGGT-CTCAAGGGTATTTTT---------ATTATCTAATCACAAATATGAATTAACATGAGCAC--AGATTTCTT
s HiC_scaffold_1 106936668 341 + 233722169 GTCATATTTAGTAAATCTCAATTCTAGGCTGTTTTCAAGTTATAACATCTGTTTTGTGGAGAGCTCTGTTTGGAAGAAATGTAATTGATTCAACAATGGTTGGAATCTTAATTTTGAGCTATCATATCAGAGTTGCAGTGGCAGTACTCAGCTGGGAAAGACTGTCCTcaccatttgtttcttttttttttttt--taaacaaaacattaaac-agctaacagaaaaccAATTGCCCTAGCTGAAGAATCTGCTCTCAGACAGCTAAGTGAAATCCTCAAGGATATTTTTTACTTTCCAAattgcaaaatataaatat-aattaatatagggacggagatttctt

a score=4761
s chr3           116466619  99 + 160039680 CCGCCCCTAGAGGCGTTGTGGGTATGACTACTGTGTCACATGTGTATCAGTAAGTGACAGAGAG----------------------AGTGTTCTGACCTGTG-------------TTAGCAGCCTAACACCCCC
s HiC_scaffold_1 194511548 134 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=5125
s chr3           116514332 245 + 160039680 AACTTCCTATG----ACCTTTTCCATCGTTTGATGTGTGTGGACACACAGAC----AGAATGGTGTGACGGGTGCCCACAGTGTTTAGTACAGTGACATGCTGGACAGGTTTGTAGTATAAGAGC--TAGCATAG-AGCTTACGTGGGCAATAAGTTAAGCCATTT---GGTTTGTGTAAGCATAAGGTGAGTCCATAGACTAGCTCATCTAATAGTGAATAGATT----TCACACAGACCTGTCATAAAGTGATGGATGACT
s HiC_scaffold_1 120602767 251 + 233722169 AATCTTTTATGCTgtatttttcctacatttttctatatttagatACACAAATTTTTATCATTGTGTTACAATTGCTTATAGTATTTAGTGCAGTGCTATGCCAAACAGGTTTGTAATTTAGGAGCAGTAGCTCAGTAGTTTAGGTGTGTAGTAGGTTATATACTATCGAGGTTTATGTAAGCACA--------TTCTATACT-GTTCAT---ACAGTGATACGATTCTCATTGTGTACCCTTGTCTTTAAGTGACACATGACT

a score=13819
s chr3           116525864 171 + 160039680 ctgcattatagctggaatAAACTTTAAATTACTATTCCTTTTTTGATTTTCTTACCCGGCTGCTCCCCTATCAGACCTCATCTTTTTTAATTTTATTTTTCATTTACCTCCCCCCATTCATTCACATGCTCATCTGAGAAGTCTTAAGTTCTTCCAGCTTTGGACAATAAC
s HiC_scaffold_1 121216632 171 + 233722169 CTGTATTATAGCTGGAATAAACTTCAAGTTACTGTTCCCTTTTTGATTTTCTTATCTGGCTGCTCACCTATCAGACctcatcttttttaattttattttttgtttacctCCCTCTATTCATACACATGCTCATCTGAGAAGACTTAAATTCTTCCAGCTTTGGACAGTAAC

a score=23512
s chr3           116528075 500 + 160039680 AACAGTAATTTAAAGTTTATTCCAGCTATAACGCAGGTTAGTCTGACTGTAAGGTAGCATCATACGGCATACTTCTGAGACCATTCCCGAGATATTCTGTTGTACGTATCTCTGTCTGTTTTATAGATCCATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCACAT-ATCAGTGAACAAATGGATAAAAGAACTTTGGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGACAAATGCTGCCATTACTGTTACTATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGATATGGGCTGTCATTAGGTCCCCTAATTGTGGCTTGCCAATGAAACATGTCATCTCCAACTGGACCTGCAGGACACTGTGCTGGAGGGTCAAGGGCCAAATCACTAAGTTCCTTATTAATCAGTTTCAGCGC
s HiC_scaffold_1  55162613 475 + 233722169 aacagCGATTTAAAGTTTATCCCCACTACCCTGCGGGTTATTCTGATTTTAAGGCAGCACTACATGGCACCCTTCTGAGTCCACT-----GATATTCTGTGGTGCTTGTCTCTGTCCATGTTTTAGATCCACACAGTCTCTGGTGCCAGGGGCTCATCTGG-TTTGGGTCACATGAGCAGTGAACAGATGGATAAAAGAGCTTTAGAAACAGTGGAAACAGGAGACGACTGTGATCTTAGAATATGGACACAGGTGCTGAGGTTACTGTGGCCATTTGCATGCCAAATCCTTGCTGC-AGTACAACCTTAGGTGTTCGGAAGGGGTCACCTGCAGG-AAGTGAATTGTC----AGAATATGCC-TCATGATGTGGACTGTGCTT-GGTCCTGCACCTGTG----GCCAGTGAGA--------CTCCAGCTGGACCTGCAGAACCCCATGTTGGGGCATTGTGGGCCAGATCCCTGAGCTCCTTATTAATCTGCTTCAGTGC

a score=11524
s chr3           116528134 430 + 160039680 TCATACGGCATACTTCTGAGACCATTCCCGAGATATTCTGTTGTACGTATCTCTGTCTGTTTTATAGATCCATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCACATATCAGTGAACAAATGGATAAAAGAACTTTGGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGACAAATGCTGCCATTACTGTTACTATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGATATGGGCTGTCATTAGGTCCCCTAATTGTGGCTTGCCAATGAAACATGTCATCTCCAACTGGACCTGCAGGACACTGTGCTGGAGGGTCAAGGGCCAAATCACTAAGTTCCTTATTAATC
s HiC_scaffold_1 157016260 430 + 233722169 TTATGTAGCGTATCTCTTGGTCCACTGTCTGGCCATTCTGTCATGTTCTGCTCTGTTTGTCATATACTGAGTGGCAATACTTCCCACCAAAGGGTCAGCAGGATTACAGTCTGTAAGAAGTGAGCAGATAGAAAGGAAGACTTTAGAAATAGTTAGTGCTGGACTCCAATTATCTTTCAATATATCCAAGCAAATAACTCCTTGACTGTTAATGTTACAGTGATAGATTCTTGTCGGAAATGTAACCTTTGGAGGTTTGAAGGGGTATTCTGGAGTAACAGTGATATCTAGGAAGAATACACCACCTTCATACACAGATCCTGGAGGTCCTAGAATGGTAGATCTCCACTCATAGATGTTGTCACCTTTGGGACCCGCACTGCAGTTAGGCGGAGGGTCTAGAGTGATGTCTGCCAGCTCCTTCTGAATC

a score=15334
s chr3           116528141 439 + 160039680 GCATACTTCTGAGACCATTCCCGAGATATTCTGTTGTACGTATCTCTGTCTGTTTTATAGATCCATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCACATATCAGTGAACAAATGGATAAAAGAACTTTGGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCAAGACAAATGCTGCCATTACTGTTACTATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCACCTTGATATGG--GCTGTCATTAG--GTCCCCTAATTGTGGCTTGCCAATGAAACATGTCATCTC---------CAACTGGACCTGCAGGACACTGTGCTGGAGGGTCAAGGGCCAAATCACTAAGTTCCTTATTAATCAGTTTCAGCGCCATAG
s HiC_scaffold_1     44393 435 + 233722169 gcACATTTCTGAGTCCATTCTCTTGTGTGTCTGTTGCATTTTTCTTGGTCTGATTTATAGATTTGTGCAATATATGGTACT--TGGGTCCTCTGGGTTAGGATCACAAAGTAGAGAACATATGGACAGTAAAACTTTTGA--TAGTCAAAGCTGGTGACCACTGTGACCTCAGGATATCAAGACAAATACTTCTGTTACTATTTATATTTGGATGGTAAATTTTTGCTGTGAAAGCAGTCTTTGGT-GTTTAAAAGGATAGTCTGTCAGAAAAC--ATAGTGAGGAAGAAGTC-TGACTGTGTCACGGATGTGACCATCAGGAGGCCCTTAATAGCTGCCTGCCAG-GGAACAAGTCAtccctcccctcttccccaggCCCAGAAGGG---TGAGTGGGAGGATCGAGCTGCAGAT-----AATTCTTTCTGAATCTGCTTCAGTGCCATGG

a score=10182
s chr3           116551521 490 + 160039680 AAATAAAATAAAAAT--GGAGACAGTCCAAAG-AAAACCACAAAAGCCAGCTGAAGCATGACATGAACACA--CAACTCTGGTATGAAGAGGCCGTCTATTTCAGGTTT-TACGGAGTGCCGTGTGGAATGTTATAACTCAAAGCGTGGGCAACAGCTGTCACTGGTGGTGAGAAGAGGTGGGAGAGAGGGAACAAGAGCAAGTAGACAGCAAGAATTTAGGTTCTAACATCAACTAAAAAGGAAATTATCAGGAAAAAAAAGAGAAATAACAGGTTATACATGGGGGAAAGCTGGGCAAAGAGAGGGATGGGGTTCGCTCGTATTGGGT--AGGTTGAGGCAGTCTCCTTCCAACAGTTAGCATGGGTGGCCTCCATCATCCCTCCCCTCAATCGAGTACTGTTATACCAGGCT----GCAAACTGTTTAACTGGAAGTTACT-TCAGGACGTTTCCATAGTAGATCTAAAAATATGGT-------AAGTCCAGAAAGACCAAGATTAT
s HiC_scaffold_1 106727810 449 + 233722169 aaacaagggaaaaatttGGAAGCAGTTCAGAGCAAAGCCATAAAAAC-AACTGAAGCATGATAAGAATAAATGCAGCTCTATTAAAAAGAGGTCAACTATATCAGTCTTGTACTGAGTAACATGTGGAATGTCACAATGCAAATCACGAGGAGCAGCTGCTGTGGGCCTTAACAAGCGACAGGCAAGAAGAAATGAGAACAGGTGCAGGTCAAGAATTTAGAATATAGTA-----------------------------------------------------AGGGAAAAGTTGAG---AGAAAGACAT---TCCCACTCGTCCTGGGCTGAGGTTTAGGTAGTCTCCCT-TAACAGGCACCACACATGACCTACCTCACCACTGCATCCAGAGAAGTAAGGCTGTGTAGAATTTAGGAAAAGATACTTAACTTTAAGTTTGTGGCAAGAAGCTTTCACAATTGCTCTAAAACTATGGTAAAAGCAAAGTCCAAAAAGGTCAAGATTAT

a score=36641
s chr3           116552752 2896 + 160039680 aaacctacacccagatttaaaagcatatctcatgatgatggtagaggacatcaagaaggactttaataacttatttaaagaaatacaggagaacactgctaaagagtacaagtccttaaagaaaaacaggaaaacacaaccaaa-cagatag--aagtccttaaagaaaaacagaaaaacacatc--caaacaggtgatg----gaaatgaacagaaccatac---tagacctaAAAAGGAAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGCAGATAGAAAACCTAGGAAAGAAATTTGGAAACATAGATGCGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCATAAGATTCCATAGAGAACATGGGCACAACAATCAAAGAAAATGCAAAATGCAAAAAGATCCTAACTCGAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAA---CCTATGGATAATA----GGAGTAGATGAGAATGAAGATTTTTCAACTTAAAGGGCCAAC----AAATATCATCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAATCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCG--ACACATAATAATCAGAACAACAGATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAAAAAGTT----------------CAAGTAACATAG------------------------------------------------------------------------GCCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAAC---TTTCAATTACCATAGATGGAGAAATCAAAGTATTCCACAACAAAACAGAATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAGAAAGAAAAAAAAATACAAGGACGGAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAA-----------GAACAGAATGCCAACTCTAACAACAAAAA--TAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActa-ataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCT----ATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGAC-----------TTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCT-CAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAAC-------------------ATTCACGTGGAAACTGAACA--ACACTCTT-----CTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTT-GAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAGGAAAACGC--ATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGC-AGCTTGACAACACA--CCTAAAAGCTCTAGAACAAAGGGAAGCAAATTCACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCA-----GAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTA-------ACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagaccaatttcccttatgaatatcga-gcaaaaatactcaataaaattctcgctaactgaatccaagaacacatcaaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgtaatccattatataaacaaactcaaagataaaaaccacgtgatcatctcgttagatgctgagaaagcatttgacaaaatccaac
s HiC_scaffold_1  25449868 2861 + 233722169 AAATTtaaacaaagaatttaaagaaatgacaGTGAAAATGGTTGATGagctcaaaagagac----aaaaatcatgtgaAAGAGTC---AATTACGGTACTAAAATGAGcactgaattaaaaaaagacaaaaataagcaaCTAAGTCAGTTAAGAAAGATATTATAGAATA-TGAAAGACCACTTTGGTAAAGAGAAGTTGTATTAAAACAAAACGAATCAAGCAAATATCCTGAAAATGAAAACCTGataaattaaatgaaacttcAATTGA------------------AAATCTAGATAGTAGACTTG--Atcat-----------tcagaagaaaaatata-gaaattgaGGACTGGAT-TGAAATGCTAGAGCATTTATGTggaac--------------caaagaaaaag--------aaagag----taacaCTAAATAATTGATTAGGCAAGAGTTCTTAGATAATTCTAAAACGTCTTCGGGTTATTTGGTAGAGAAAAAGGCAATGAAAAA----CAGGTTAGTGATCCTGTTTTAAGATGTATTCCCTGACATTACAGCAGAAAAACTTCTCAGTCTAGGAAATGAAATAGATACCCAGATAAAAGAGATctttagaactccaaatagat-----CATAAAGGA---CCCTCCCATAACACATCATAGTAAAAATGCTAGaaatttagaacaaaataaaaatactaaaagctgttagagagaaggaTGTgatggagatatagctcagtggcacagtgtctgcctggcaaacacaaggttgtgagtttgatttctggtatctaaaaaaataaataaggaaaagggCAAACCCatctcaataaaaacaaatttcccAATATAAACATTAAAGGCCAGGTGGGCTTACAATGAAGCTTTCCAATTTCTGAAATAAGATATTTGCCAATCAAGTTTACTACATACTGCCAAGCAGCTATCCTTtaagatcaaagaagaaa--aagactttCCACAATGat---gaattca---------tgaccatcaataGAATGCTGCAGAAAATACTTA---------AGGAAATTCTAAACACAGATTGAGACAATG-ctaagacataaagaaagaaTAATG-TTCA------CTGGGAGAGAAGATACATAAACACCAAAAAAGAACCAAATgccag----aaaaacaacaaactgacAGGAATTGatacatatttttcaatattaacACTCAATAGAAATGG-------CTGCCAATTAAAAGATGCAGTTTGATAGACTGGATCATAAAATAAGACTTCAAATattat--ctgaaagaaaac--atctcaactaaaa-tatatacacatactgAAAGCAAAATGGTAGAAAATTATATTCTAAGCA------------------GCTGGAA----CATAAAAGTATGCAGAATAATTA------TATCTGACATGATTGACTTCAAATCAAAACTGATCAGTAGAAACAAAGCAGGCAAATACTTAATGGTAAAGGAAGGAATTCaccaagaagaaataataattataaacatatttatacACACCAAATCTCAGTATaagtaatttcaaaaaaaaaaaaaaaaccaccatttGGAAAAA-----GGAACAGACAGACTCCAATATAATCATAGTGGAAAACTT-AGTTTTCCACTATCACAAATAAACACAAtagataaacaataaataaacat---cAGAATTAAATTAT-----ACTATAGATCAAATGGTCTTAATTAATATCTATACAGTGTTTTACCCAATATCAGCTAAATACATTTCCTTTTATAGCACCCTGCGGAATttt------aataaatcatattttaGGTCATAAAGCAAGtttaagtaaatagaaaaa-gTTGAAACTATTGCATATATCCTATCAGatcacaataaaatgaaactagaaataaatagcaaaagaaactacagaaatttGATTATTTAAATGATTATACTTGATCATATGGAGATTAAATAGTATAGTCTTGATTGATCAATGAGACACTAG------AGAAATTagaggagaaattttaaaaattctcagaatCAAATGATACTGAAACAATTACATGTAAGAATCTTGGGGAGACAATAAAAGCAATTCTAGGAGAAATGAATCCTTACATTAGAAAAACAGGGCGAGCTCAAATAAAAGAATTTAGTGATGCATTCCTAGA---TTTAGAAAAA---GCAATACTCTAAACTGAAACCAGtagaagaaaacatataataaaaaacaaagcagaaattaaagaaattgaaactaaaa----------aagaatcaatgagttaTAGAGTTAGTTATTTGAAAAGATGCACAGGACCAGTAAGACTTCAGCCAAATTTAGTGAAG-----------AAAGTCCAAATGGATACAAATACAatgtaaataaaggaaaaattataaaaaaaaaatc-accaaaattcagagaaccacaaaaaaatatttcaaaatgtga-gTTCAACAAAA-TAGAGACTCTGGAAAAAATGGATAAGTTCCTAGATGCATATAACCTACATAAATTgagccaagaaaaaaatatatatatataatctaaatAGATgaataacaagaaatgaaattgaagcagtaaatCCAATTCTACCAACCAGGAAAATCCAGGACAAGATGGATTTACAACTGAAGTCTAAGAGGCCTTCAGGGAAGAACTGATT--AATTCTCTCC--TTTTATCCATAAAG-------AGATGTTATCCTTCCAGATTTATTCTATCAAGCCAAGAGTACCCTGATACTGAAACCAGACAGAGatgcaacaaaaaagaaaatctacagatCAATATCTTTGATAAACACAGATACAGAAATCTTCTATGAAATCCTTACTGACAGAAGTCAATAGC-CAtcaa---gatcatacatcatgaccaagttgaTTTTATCCCAGGGATGTGAAGATTATTacacataaataaatcaataaatgtaacacatcgcATAAGTTTAATCAGAGATAAAAATCACAGGATCCTCTCAATGTAAGCTGAAAAGGCCTTTCACAAAATACAGC

a score=18430
s chr3           116552768 1758 + 160039680 ttaaaagcatatctcatgatgatggtagag------gacatcaagaaggactttaataacttatttaaagaa-atacaggagaacactgctaaagagtacaagtccttaaagaaaaacaggaaaacacaa---ccaaacagatagaagtccttaaagaaaaacagaaaaacacatccaaacaggtg---atggaaatgaa----cagaaccatactagacctaAAAAGGAAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGCAGATAGAAAACCTAGGAAAGAAATTTGG--AAACATAGAT-GCGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCATAAGA------TTCCATAGAGAACA--TGGGCACAACAATCAAAGAAAATGCAA--------------AATGCAAAAAGATCCTAACTCGAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTATGG-----ATAAT-AGGAGTAGATGAGAATGAAGATTTTTCA-ACTTAAAGGGCCAAC--------------------AAATATCATCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAATCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAGATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAAAAAGT---TCAA--GTAACATAGGCCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTATTCCACAACAAA-------ACAGAATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAA-----------CAGAAAGAAAGAAAAAAAAATACAAGGACG----------GAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAAGAACAGAATGCCAACTCTAACAACAAAA-ATAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA-CAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACA---AAAATATTGAAATTGTCCCATGCATGCTCTCAGACCA
s HiC_scaffold_1 233646963 1666 + 233722169 tcaaaagtaATTTCTCTGATAACTTCAGAGATGATGGGCATAATGAGGGGCCTTATTAGTGACTGTGGAGAAGATACACATAAAAAACATAGAGGAGCACAAG----------AAAGTGGGAAACCATAAATGCCTAATATAGGGAA-----CAAATGAAAaccatgaaacaggttcaaataGATGTCTATGAGATTAAAAATTCACAGGGGCACGAGAC-----AATGTGAGGAGAGAATATCAATCAGATCTAGAGTACAGAA----TTTTGGTttgtgaccatgaaaagaaattctgttaaaaatagaaagggaccatgaaaaaATCAATCCACCAGCTG------------CTAGGTGcataaaagaagaataatataaaaaacacTTTGACACA-CAAACAAGGCATATACAATTCTAATtagccatgattaaaaaaaaatctagctcaag--------------ctggacatggtgaca----catacctatagtcccagtgatcaggag--gctgaggcaggggaatcccCATGAgtgcaaggctagcctgggctgcatagtgagttcaaaatgaATCAACACTATGAAGCAaga-----ccctgtaccaaaaaaaaaaaa-------------aaaaaaatccca-agtaaACAAAATGTACCATAAGGGATATAAAATTCA---AGATTGAGGAAATTCAGCACAATA----CACCA-------------TACTACAAGctgttaagagaaaaacaaatcaacgATAAAGGAagaccatcagaatcacagaagacttttcaATACAAACCCTTAGGTGAAGGAGAGCtgggaatgaagtatttcaggtcccaAAAGAcaacaaccttcaacccagattgctATGTCCTGCAAAGCTATATTTCAAagttgatgaagaaataagatacttccatgacaaagaactgaaaaaaattca---------tgatcacTAAACCAGCTctacaaaatattctgaaaactattttataaagAGACAAGAGtacaattccaagaacaccaATGATATGAAACCAC----CAGGAAAGGCaatcaattaaac----------------agaaggga------atgatagagaaccaac---aacaggaaaatacaaCAAGGATAAATCAGTACATATcatttataactatcaatgtaaatggcctcaatttaccattcaaaagaaacagagtgacagaatggatcaacaaa-aaGATCCAACATTATGGtgc--ataagaaacacatttaaactgAAAAAGCAATCAAGAGA-CAAATTTAAAGGAtgaaaagcaatacttcatgcaa------------------------------caagaccTATTTTATTTGTAG-----------ACACAGTGAACtgcaagccaagactgatcataagagataaagaaggtcactatgtacttggtaagaaaaaaaactgcaagaagaaaagatca----taaatacGTACGTACCAAATGCCAGTGCAcccaaatatattaaaacatatt-------------aaCAGACATGCATAATCATATTGTAATAG---GGGATCTCACTACCCCACAGACAAAAATAGGCACATTAACTAGACAAGCAATCAACAAAGAAGTATCAGAACTGAGCCAAACCTGTTGAACAAATGGATTCAGTAGATATGTACAAAGTGCTCCACCCTACAACATCAGCATACAAGTTCTTCTCAGCTATTCATGAGAAGTTATCTAAAACAGAATGCAtattaacccacagaacatacttaaataaatatatgcaatggactgaaattattccatgcacaGTATCAGACCA

a score=27175
s chr3           116552824 3366 + 160039680 atttaaagaaatacaggagaacact----gctaaagagtacaagtccttaaagaaaaacaggaaaacacaaccaaacagatagaagtccttaaagaaaaacagaaaaacacatccaaacaggtgatggaaatga-acagaac------catactagacctaAAAAGGAAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGCAGATAGAAAACC----TAGGAA---------AGAAATTTGGAAACATAGA--------TGCGAGCATCAGCAACAGA----ATACAAGAGATGGAAGAGAGAA--------TCTCAGGTGCATAAGATTCCATAGAGAACATGGGCACAACAATCAAAGAAAATGCAAAATGCAAAAAGATCCTAACTCGAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTATGGATAATAGGAGTAGATGAGAATGAAGATTTTTCAACTTAAAGGGCCAAC----AAATATCATCAACAAAATTATAG------AAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAATCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAGATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAAAAAGTTCAAGTAAC--------ATAGGCCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACT--AAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTATTCCACAACAAAA----------------CAGAATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGG-ATAATAACAGAAAGAAAGAAAAAAAAATACAAGGACGGAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGC-------TGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAAC-----------AAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAA----------ACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTT-----CTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAAT--------------GAGGAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAG---AACAAAGGGAAGCAAATTCAC--CCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGC-ATAACAACAGATCCTAA---GGAAATCCAAAAT----ACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagaccaatttcccttatgaatatcgagcaaaaatactcaataaaattctcgctaactgaatccaagaacacatcaaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgtaatccattatataaacaaactcaaagataaaaaccacgtgatcatctcgttagatgctgagaaagca-tttgacaaaatccaacacccattcatgataaaagtcttggaaagatcaggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggac-tagaca-------------------------------------aggctga--------------------------------------------------------------------------------------------------------------------------------------------------ctactttctccctacctattcaacattgtacttgaagtccgagctagagcaatacgacaacaaaaggatatc-----------------------aagtcaaaatatcactttttgaagatgatatgatagtgtatatataagtgaccctaaaaattccaccagagaactactaaacctgataaacagcttcagtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaaggatgaacaggctgaaagagaaagt----------cacaattctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctaaagaaagaaattaaagaaga----------tctcagaagatggaaagat
s HiC_scaffold_1 171883467 3221 + 233722169 ATTTGAGGTGACAGGGGAGAAAATCTAAAGCTACACAACTCAAATATTTGAAAGGtaacagagatttaaaaaatagaagaataatgtgcTTAATGAGCacaaaaaagatttaattaa-cagataatggacctgatACAAGACAGTCTACAGAATACACTAATAAAAGACACttgagcaaaacaaaatgatacaaactaTGAAGGCCCAGCACAGAAAAGAGCACATTAAAAGGTACCAATTAGaagttcagaaaattaaaaattctttcgTAAGTATTGGCAGCAGACATGACCAATGTGAGGAACCAGAGAACAGGGCTGTTGCTAGTGATCAATTACACAGAGACACCTTAGAAACAACaat---agaacatgaaaaatg------------gattcaACAGCCCCTGGA------TGATGTAA--AGAAGAC------------TAACAGGAGTTACTGAAAAATAGGAAGCTACCAC---AAgtggcatttttaaaaacctgtttactgaataatagccaaaaaaaaaaactttccaaatatggaGAAAGAGTCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAA-GTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGccaaactagcactccaaaatTTC------TCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCAAATGGTCCAACCAAATGACTACAGCATAC---AGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAA-------ATAAAGTCACAGATTAAAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTAT-----------actattt---------tcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagag---aaaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCCAAATAGAAAACATACTCATCTCATA---------AAGGCATACTTAAGTATTCATAAGGA-gtcaaaattattccatgcatac-aTCAGGTCATAGTGCA-TAAAACTAGAATGCAGtgccaaaagaaaccacaga-aattagcaaatgcatggaaattaaataacacactcaaGTACTCAGTGG------GTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACACAAGAACTT-TGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaacagtgaactgaaata--aataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaa----caaaaaaaaggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTac---------caaaaacaataaacaaacaagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGTTCTCAGATA--------------------------------------------------------------ACAGAAAT-----------------------TATCAAAAATGAAccaaggccaga--gatttagctcag--------cagccc--------------------------------------------------agcagg----------------------tgtgaagtcatga----------------------------------------------------------------------------------------------------gttcacaGAGCGCagtaaatcattaaaaagatcatacatcaaaACCAACAAGGGTTTCTCC--------CAGGGATGATTCAACAgac--aaattaataaatgcaatGTGTCACATAGACAGAAGCAAA--------------AATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAAATGCAACA---ATTCATGGTAAAagtc-tgaagaaaataggtatagaatgATCTTTTCTGAAGCTGGTAAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgg-gaaaaactgaaagctttccctctaaagcCAGGAACACagccaagcgtggtggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataaaataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaagggtacgtacaagaaaaaagaaataaaattatcattattttcagataacaTGAGCGTCTACATAGAA---AACCAAAAAATTCCACT---------CCAAAATTAATATCCA---------AAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaa--------caggaaCTAATCTAAGACAGTGAAAGTCCTTTACAATGAAAACTCC---TATGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=18728
s chr3           116552845 2850 + 160039680 cactgctaaagagtacaagtccttaaagaaaaacaggaaaacacaaccaaacagatagaagtccttaaagaaaaacagaaaaacacatccaaacaggtgatggaaatgaacagaacca------tactagacctaAA--AAGGAAAGTA------GACACAATAAAGAAAACCCAAAGTGAGGCA---ACGCTGCAGATAGAAAACCTAGGAAAGAAATTTGGAAACATAGA--TGCGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCATAAGATTCCATAGA-------GAACATGGGCACAACAATCAAAGAAAATGCAAAATGCAAAAAGATCCTAACTCGAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAA------CCTATGGATAATAGGAGTAGATGAGAATGAAGATTTTTCAACTTAAAGGGCCAACAAATATCATCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAAT---------CCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAGATGCACTAAATAAAGATAGAATATTAAAAGCAGT---AAGGGAAAAAGT--TCAAGTAACATAGGCC-TATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAG-ATGGAGAAATCAAAGTATTCCACAACAAAACAGAATTCACATATTATCTTTCCACG-AATCCAGCCCTTCAAAGGATAATAACAGAAAGAAAGAAAAAAAAATACAAGGACGGAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAA-ACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACA-----AATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTG--GAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAA------------------AAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGA-AAATGAAGCCACAACATACCCAAACTTATGG--GACACAATGAGGAAAACG--CATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGA---ACAAAGGGAAGCAAATT-CACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATA-TTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAAC-AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagac------caatttcccttatgaatatcga-gcaaaaatactcaataaaattctcgcta--------------------------------------------------------------------------actg------------------aatccaag-----------------------------------------------------------------------------------------------aacacatcaaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgtaatccattatataaacaaactcaaagataaaaac----cacgtgatcatctcgttagatgctgagaaagcatttgacaaaatccaacacccattcatgataaaagtcttggaaagat-caggaattcaaggccca
s HiC_scaffold_1  89593848 2802 + 233722169 CAGTACAAAAACACAGgaattgttagaaaaaaataacagaatatccCCAAAAATGTATAACACTTCAAA-----ACTTGATTCCATATATAATTAAttcctaaaatt--ataaaatcaattaaGTTTTATAGCTAGATTAAGGAAGACATTGCAGGATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaagaaa-------agataaacggGATTTAGTGGATACAGTAGAACATTCATTTAGTAATCA--------------tggaaaaagaactaaaaatgaaagattaagaa-----------taataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATA--CTAAAGCATAAGCATCTATC--CATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCT-----CAT---------TTAAAGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCATCAAATTATCAAGTCAACATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAAC---------------TCATGACAAGTAAGCCAGCattccagaaaatatttaaatatcacaaaGACAATGAGTATAAG-------ACCATGT-------AAAGTATAAatttaattggaaaaataaagacaaaaatgagaacAA--GGAATTAAATGTTAG----AGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAAT-CTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGAT---CTG--GAAACAAGCAGGGTTGACTATA---------------CTTATA-----TCTGA-AAcgtagaattaaaacaaaaatcttt---aagtGACAAAGAATGCCACTACACATTG-TAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGGAAC-ACAAATGCCTGCACA-TGttatttcataaaacaatttCACTTGAAAAGACAA-ACACAT----CCCCAAA-AATA-TAGTAGGGGACTTCAACAC--TATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCAC-------------------------------------ATTTTAAAGTT------------CTATTGCATCACAatggaatgaaacta------------gaaattattaggaaaaaaattacatgaatatGCTGAAATTGAG---------TTAAAATGATACATTTGTAAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtca----aaaattaaatgacaaatcAAAC----ACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAAAAGCAAG---------------AGTGGTTCCCAAAAAATA-ACCTAATGGTactaaagagaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAGagac-----------tcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat-taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcaca----------aaaaaataaaaccaagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=4594
s chr3           116552983 303 + 160039680 GTAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGCAGATAGAAAACCTAGGAAAGAAATTTGGAAACATAGATGCGAGCATCAGC--AACAGAATACAA------GAGATGGAAGAGAGAATCTCAGGTGCATAAGATTCCATAGAGAACATGGGCACAACAATCAAAGAAAATGCAAAATGCAAAAAGATCCTAACTCGAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTATGGATAATAGGAGTAGATGAGAATGAAGATTTTTCAACTTAAAGGGCCAACAAATATCATCAA
s HiC_scaffold_1 139027732 279 + 233722169 gtacaaaaaacaaaaagaacccaACAGGAATC----TTGGAAATGAAAAGCTCAGTAAGTTAAATTAAGAAC-TCAATGGAATGACTAGTCAAACAGAAGATGGAATTCTGAGCTTGAAGACAAAGTT---GATGAAT--TATCATACAAGGaacat----------aataaagaaaa----agatgtcAGAGGAAT-------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGA-TGTGCAGATTAAAGGCACAGAAAATCTACTCAA

a score=15864
s chr3           116553174 1182 + 160039680 AACTCGAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTATGGATAATAGGAG-TAGATGAGAATGAAGATTTTTCAACTTAAAGGGCCAACAAATATCATCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAATCCAAATAGACTGGACCA-------GAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAGATGCACTAAATAAAGA--TAGAATATTAAAAGCAGTAAGGGAAAAA--GTTCAAGTA---ACATAGGCCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTATTCCACAACAAAACAG-AATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAG--------AAAGAAAAAAAAATACAAGGACGG---AAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCC--ACAAGAACAGAATGCCA-ACTCTAACAACAAA-----------AATAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCA--AATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGA-----------------------ATTCT-------CAATT-CTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA--CAGAAGTTATGAAA
s HiC_scaffold_1  67576325 1166 + 233722169 aactcaaagaagctaagaagaaaaatagacaataaGAA----AAGACTAtg--caacagctgctagatgatagCACAGAT-------------GAATTCACTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagttta------aaatacaagtaactgacatttat---aaaacattgaaCAATTATGATAAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAACATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTTGGATGATATATGAGTGCTAAATCAGCTCT---Aaggaaaatacttaagaatattctcaacagaaacaataagtcagacacagctaaaatcacag---aaagaaagcAGTAAGGTCAAT----gataaacagcaacaaaaaaatccggaaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGA--AAATAAGCAGGGTAAGCAAT---------------TCTACTATCAGATGCGGTAA-----ATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaaaagggtacaagttatgcagaatttcagaaa

a score=72031
s chr3           116553221 4251 + 160039680 [encoded data, 4746 characters]
s HiC_scaffold_1  10897704 4561 + 233722169 [encoded data, 4746 characters]

a score=42722
s chr3           116553271 3993 + 160039680 [encoded data, 4494 characters]
s HiC_scaffold_1  55842550 4130 + 233722169 [encoded data, 4494 characters]

a score=26451
s chr3           116553273 2455 + 160039680 CAAATATCATCAACAAAATTA---TAGAAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAATCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAA-CAACAGATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAAAAAGTTCA--AGTAACATAGGCCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTATTCCACAACAAAACA------GAATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGGATAAT-AACAGAA------AGAAAGAAAAAAA----------AATACAAGGACGGAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACT-CAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCC--ATCTCAGGGAAAAAGACAGAC-AATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTA-----------------------------------------------------------------------------------------------------TCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACA--CAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAA---AGAAATTAAAGACATTTTT-GAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAAT------------GAGGAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAAC----AAAGGGAAGCAAATTCACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAG-ACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGA----AGCAGTCATTAATAGTCTCCCAACAAA-AAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagac--caatttcccttatgaatatcgagc-aaaaatactcaataaaattctcgctaactgaatccaagaacacatcaaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgtaatccattatataaacaaactcaaagataaaaaccacgtgat--catctcgttagatgctgagaaagcatttgacaaaatccaacacccattcatga----taaaagtcttggaaagatcaggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaa
s HiC_scaffold_1 116834068 2366 + 233722169 CAAAGGTCATAAAACATATTCACTTATAAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACAAATTCTAAAtatccaacaaagaaa-----aatacaaaaagttgtTACATAAAAAGAGCAGCAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAGAAGAAATATATGA-----CCACTAAACATACAATAGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaatt--------aaacaaaaggaaaaaaaacaaaagaattggc-----ATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAAT--ACTGAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagattaatA-------GTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCT---------------TATCT-------TATTTCGGAACAACAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCA-------CAGAACAAAAAC---------------------------------TGCTGTACATATAAGGAAAAACATATCAAT-------------------------------------------ACAATTACAGTGAGAAATT-CAATAACCTACTCTCAAAACTAG-CAggtcaacaagacaaaaaattagcaaaactTATCAGTTAAAC-----AATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTGAAGTTA---TAAATT--AACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataat-------caatggatcacagaagaattcaaaaaataagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCTGAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATC-ACTGGAATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAAC-----AGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTCATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGG--gacaaaaaatcttaaaaaatctaatatccattcatgatttttaaaaaccctg---------------------------cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=8420
s chr3           116553288 757 + 160039680 AAATTATAGAAGAAAATTTCCCAAACCTAAAGAAAGAGATGACCATGAACATACAAGAAGCCTACAGAAATCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAGATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAAAAA-----GTTCAAGTAACATAGG---CCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGT-TATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTA-TTCCACAACAAAACAGAATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA-----AAGAAAGAAAAAAAAATACAAGG--ACGGAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAA-AAGAAGAGAGCCACAAGAACAGAATGCCAACTCTAACAACA-AAAATAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCA-TCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATA
s HiC_scaffold_1 129057714 732 + 233722169 AAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATAGAAAAAAACCCTGAAGTCC------AACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGC--AAACCCTAAAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaat-aaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGG-----TTGAGTTAAGttaagaagaagggaaaaggagaatcag-----caacaggaaaatcatacaatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTT---TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATAAATAGATTTGACCctgaaagaaattcatagactaaaatt--------aAGACtcaaaaacagtattccatgcaacatgaACCTAAAAATAAGTAGGAGTTGAcata

a score=25348
s chr3           116553447 1775 + 160039680 CAGTAAGGGAAAAAGTTCAAGTAACATAGGCCTATCAGAATTACACCAGATTTTTCACCAGAAACTATGAAAGCCAGAAGATCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATG----CCAGCCCAGGCTACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTATTCCACAACAAAACAGAATTCACATATTATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAA-----AGAAAGAAAAAAAAATACAAGGACGG----AAACCACGT--CCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAAGAACAGAATGCCAA------CTCTAACAACAAAAATAATAGG--AAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaat--aaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAG-ACT--TTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGA-ACAT---TGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAA---TGAAGCCACAA-----CATACCCAAACTTATGGGACACAATGAGGAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACA---AAGGGAAGCAAATTCACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGG-------AAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAAC
s HiC_scaffold_1 227404779 1666 + 233722169 cagtcagagaaaaacaaaaaattatata------tcagaatttcagcagacttctcaatacaaatctTAAAGGCCAGAAGAGCATGTGAAG----TATTTCAGCACTAA----ACACAAATAACGTCCAACCTCAGCTAACCTACCCA-CAAAGCTTTCTTTCAGAATAGGTGAAGAAATAAGAGTATTTCACAAAAAAGACCAGCTCA---AGAGACTT---ATGACTCCAGCATTCCAAAAAGCACTCACCAATTTCCTAGGCAGAAGACGTGAAACCAAAACAGGTCAAAACCTCGTGACACAAAAACACCAAGTAAGG------TCAACAGGtaagcaacaaaaaa-taacaagaaaagaaaaataagcaagtcAGTAACAGAGAAGGCAATAGAGCAAACAACCAACACTTCTCAGCGG-GCCTCTCAATGTTAATGACCTCAATTCCCCATTTAAAAGATGAGGATTCATAGACGGGATCAGAAAACAGAATCCAACTGTCTGCAATGTGCAAGAAGTTCACCTAATGCAAACAGatgttcacagactgaaaattaaag---gGTACTTCATGCACCAAG------ACCTG--GAAACAAA-TGGGGTAGCAAC---------------TTTAATCCCAGACATGTAA--------ACTTCAAGCTAAAGCTGACTAAAAGAGACAAAGGAGGCCACTACACCCTGCTCCAGGGAAGGATGTATCAGGAAGAA---ACACTGGTAAGTATTTCTTCACTGAGTATCAGGGCACCTACCTTCATAAAACAGCACTGCTGAATACAAAAGACTCCAAACATG----TTAACACGCCCAGAGTGGG-GATCTTAGCACCCCACTTTCACAAA--GTCAGGTCAACTAAACAA----TAATCACAGAAACATTAGAATTAAACCACACCCTCAAACATACCGGTGTACTTGATATCTACAGATAGATACCTACATCCCAACACAGCACAGTACACGTTCTTTTCCGCAGCACACGGTACTTTTTGCAAGATAGATCACACATTAGTCCACAAAGcctgcttaagtaaatataaaggttTTGAAATTATCCTGTGTGTACTCTCAGACCACCATGCAATGAAAATA-----GAGTTgcagaagaaatagcagaaaaggTAGAAGCATCTGGAAAACTAACAACACACCTATACACAA----CCAGTGATTATAGAAAAAGTCAAGAAA-----------TTTAAACTCACCAAAAACTCTGGGACCCCAAGAAAGCAGACCCGA----------------GAGAAAAGTTCATTGCAAACAATGCCTCCATCAGGAAAATGGAGCAAGCTC-------CAG-TGAATAACCCCATGAGGAATTCTAAAATACTTGAGAAACACAATTCCGGCCAAAACAAATTAA-GGAGGGAAACTAT-aacattagagcagaaatcaatgacatggaggctaaaaacaaacaaaaataatgcacAGATCGGCAAATCAAAgcactggttctttgaaagaataaacaaaacagataggCCCG----AGGACTTACCACATAGTGCAG-----------------------CTAGAAATGCAAAAGATGAAGTCACAACAGACACTGTCAAAATCCagaatatagtaa----ctactttaaaaaacTCAATTCCAACAAATtggcaaattttaaagaaataga----ttcctagatgcatataaattaccaaagctaactcaagaagacacaaatatgCTAGACAACCCAGTGACAAGCAATGAAAtcaacacagtaaaaaggaaTCTGTcagc

a score=34872
s chr3           116553580 2608 + 160039680 TACTATACGCAGCCAAACTTTCAATTACCATAGATGGAGAAATCAAAGTATTCCAC--AACAAAACAGAATTCACATATTATCTTT-----CCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAGAAAGAAAAAAAAATACAAGGACGGAAACCACGTCCTAGAAAAAGCAAGAAAGTAATCCTTCAACAAACCTAAAAGAAGAGAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAA---------TAATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGA-AAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAA-----GAAACA-AGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCA--CACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTA--AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGA----------------------CATTTTTGAGTTTAA---------TGAAAATGAA---------------------------------GCCACAA-CATACCCAAACTTATGGG-------ACACAATGAGGAAAACGCATAGCTCTGAGT-----------------------------------------GCCTCC---------------------------------------------------------------------------------------------------------------------------------AAAAAGAAACTA---------------------------------GAGAGAGCACATACTAGCAGC------TTGACAACACACCTAAAAGCTCTAGAACAAAGGGAAGCA-AATTCAC--CCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAAT-GAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAG-ATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagaccaatttcccttatgaatatcgagcaaaaatactcaataaaattctcgctaactgaatccaagaacacatcaaaacaatcatccatc-ctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgta---atccattatataaacaaactcaaagataaaaaccacgtgatcatctcgttagatgctgagaaagcatttgacaaaatccaacacccattcatgataaaagtcttggaaagatcaggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggactagacaaggctgactactttctccctacctattcaacattgtacttgaagtccgagctagagcaatacga-----caacaaaaggatatc---------------aagtcaaaatatcactttttgaagatgatatgatagtgtatatataagtgaccctaaaaattccaccagagaactactaaacctgataaacagcttcagtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaaggatgaacaggctgaaagagaaagtcaca----------attctcaatag--tcacaaataat--ataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctaa----agaaagaaattaaagaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAAAT------TTTGAAGACCACTAAGTGAGCACTACAAAAGT-----ACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAACATCA----AAGAGACTAAAGGAATGAATACATTAATCA--TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCATCAATAACAGGTACAT------TGAAAATTagatgatggaaaacaatacttcatgcaa------tgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattt--------------------taaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAA---TACTGCTGCACATAGAGGTCAGATAAACAGCCACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCAACTGGACA-AAACTATCAGCAAAGAATATGAGAGTTGAACTATACCTCTGAA-CAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattgg----aaaccatGGCAAAGGAATCACAGAATTTTCTCAACCATGAAGACGCAGGAACAT-------GAGCATTCTTGCATAgtcaatggataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGGAAGTTTGTAATTGTGAGCGCccacataaaaacagaaatatagcaATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAA-----------GTGGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgcaaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACCT-TACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaataagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGG-ATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=20930
s chr3           116553801 1648 + 160039680 AACTCTAACAACAAAAAT--AATAGGAAACAACAATTACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCA-------GGGAAAAAGACAGACAATACCTCAGCATGAAA-----GGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAA-AAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAG-------AAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATA----------------TTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAGGA--------------AAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAGGGAAGCAAATTCACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAA--TACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACAA---AAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagaccaatttcccttatgaatatcga-gcaaaaatactc
s HiC_scaffold_1  55820534 1587 + 233722169 AACACAAactagaagaatggatcaagaaacaaaatccaatactc--tggtttctcttcagaccTTGTGAATCTTTTGCCTAGTACTAA----TGAAACAACATCC---------AAATAACATCCAATGGAGTATTGcgtataaaaaacacatttaatccaaaagaGAAACTCATGGGCTAAATCAAAGGATGAAATTAAAGGATGAAAAGTACTACTCC-------TTGCCTCATGAA---------------CATAGAA--AGCAACATGGCTATGCTATCATCACATAAAGTGG---------CCAAGATTGTCCACAAAAGGTAATGGAGGTCACTATGTATAGTTTAAGGAACCAATCTAACAGGAAGAGATGACAGTTATTACCTTACATATACCACAAAACAGCACAGCCAACTTCCTAAAACAAGTACTACTGGatataaaagatgaaat--------aaacatttacaG-------TATCAATAT----CTATCTCTTAAGAATAGAACAAGTAGACAAAGTCaagacaacaacaataaaaaattcagtgttgaaccaaaccttcaaataaatggacttgatgCATGTCTACAAAGTATTCCACTC---AACAATGGAACAtattttcttctcagcagtacatggaactttctccaaaatagaacacataccAACCAGTAGAGCAAATAtaagtaaatgtaaatataagTAAATGTAAGAGAATCAAAATTATATCATGCAtcttatcagatcataatgcagtgaaactagaaatcaatgacaaaacaga-aataaag------cagaTATGTGAAAACTAAACAGTACACTGTTAGATAACAGTTCAGAGAAGAtggtaataaagaaaaaatgcagt---TTCTAGAACTAAGTGACAATGCCAGCAGAGCATAACAGAACTTAGAGGATCTAATGAAAGCATTCCTAGAGTAGAATTTTATAGCTATGAATGCCCACATAGCAAAAGCAAAGCAGGCTCA----ACTAACCTAATGATACAACTGAAGCTCCTACAAAAGAACGGTCCA----TAGccaaagctagtacaaggaaggaaattataaacatcag------aatcagtgaaatcgagaccaaaacaaacaaaccaaaactcaCAAAATAGaggagttagttctttgaaagaa---acaaaatagagaaaacatgaaCCAATCAAacctaa----aaaaggaaag-atccAACTCcaagcaattagaaataaaaaaggtgaaatcacaatgaacattgcaaaaatgaaagaattatccACAGTTACTTC---AAAAACTTTTGTACCAATCAGTCagagaactcagaagaaatgtaGA--TTCCTTGATACATACAAATTACCAGAACTGaaccaagaatatttttaaatgctgaacAATCCAGTAGCAGGTAAAGATATTAAAACACTAATTAAAAACCTACTACCAATTAGAAAAGTCTAGGTTCAGAAGACTTTACTGCATGATTCTATAAAAACTTCAGAGAAAATCTAACACCAATACCCCTGAGTCAA----ATGAAATTGATAGTCAAGGAATACTCCATGAATCATTCTTGGAGGCTACCATTAACCTTAGA--------AGAAAAGAATCTAGCTAAAATGGAGAACTGTAGACTGAGGTCTTTAATGAATCAAGATGCAAAACCATTC

a score=4989
s chr3           116553835 209 + 160039680 TACTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGA--AACAAGCTGGAGTAGCCAT
s HiC_scaffold_1 185583347 192 + 233722169 TACGTGTCTAAAACAACTTTGAAGGTAAACATACTAAATGTCTCAATTAAAAGATACAGTCCTGCTGAATAGATACAAAAACAAGACTCAACAATATGCTGCCTTTAAGAAACTCACTTCACCAGTAAATAAAG--------------TGAAAGACTGGAAAAAGATAGTACATGAAAA-----TGAAGACCAAAGAGCAGGAGTATCTAT

a score=29064
s chr3           116553837 2474 + 160039680 CTTTTCCTTAATATCTCTTAATATCATTGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGTTACATAAACAGGACCCAACATTTTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACAATACCTCAGCATGAAAGGCTGGAAAACAATTTTCCAAGCAAATTGTCTGAAGAAACAAGCTGGAGTAGCCATAAAActaataaaatatctaataaaatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTT--CATACTAATCAAAGGTA-AAATCTTCCAAGAGGAATTCT--CAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCAT--------------------GGAAACAGA----------------------------AACTAAA--------------------CAGGGACACAGTGAAACT---------------------------------------------------------AACAGAAGTTATGAAAC--------------------------------------------AAATGGATTT-AACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAG-----------GAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAGGGAAGCAAATTCACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGG-AGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagaccaatttcccttatgaatatcgagcaaaaatactcaataaaattctcgctaactgaatccaagaacacatcaaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgtaatccattatataaacaaactcaaagataaaaaccacgtgatcatctcgttagatgctgagaaagcatttgacaaaatccaacacccattcatgataaaagtcttggaaagatcaggaattcaaggcccatacctaaacatgataaaagca-----atctacagcaaaccagtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggactagacaaggctgactactttctccctacctattcaacattgtacttgaagtccgagctagagcaatacgacaacaaaaggatatcaagtcaaaatatcactttttgaagatgatatgatagtgtatatataagtgaccctaaaaattccaccagagaactactaaacctgataaacagcttcagtgaagta---gctggatataaaattaactcaaacaagtcaatggcctttctctacacaaaggatgaacaggctgaaagagaaagt-----cacaattct-----caatagtcacaaataatataaaataccttggcgtgactctaactaaggaa---gtgaaagatctgtatg-ataagaacttcaagtctctaaagaaagaaattaaagaagatctcagaagatggaaagatctctcatgttcatggattggcagaatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccagctcaattcttcaacaaattagaaa
s HiC_scaffold_1  42973449 2219 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGT-----TTATTAAATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatgg----aattaaaaaGCTGT----GTAATAAGATTAGCTATATTC--------ATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagaca-GAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGG----TCAGTAGGTCAGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGAAAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttagga-aaacaaaaccaaa-----ctaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgg----------------ggagaatcatc--------------------------------------------------acaagtttgaggtcatct-------------------------------------------------------tgGGCTATGTACTGAATTC-----------------aggacta-----------gcctgaacta-------------------------------------------------------------------------catagtgagacctatcataaaaaga-------------------------aatatt-attaaagATGT----TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaatca--tgatTGTCTCAACTGCTAC--AGAAAAGACTTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACCattataa-atgagaaagaaataaaatggatataaaacataactatttgcagacaatacGATCATATACTTAGAA--AACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTA--------AAAATACTCcag---gaatcaacctaatgaacaggtaaaagacctctacacagaaga-----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaaa

a score=5627
s chr3           116554067 376 + 160039680 aatatctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATA-----ATAGCGGGAGATTTCAACACACCACTTTCATCAATGGA-----CAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGA-----AGTTATGAAA-------------CAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCC
s HiC_scaffold_1  39218799 396 + 233722169 AATCTTTGACAAAGCTAACTTCAAGATGACATTAAGCATGTGAGaaaaagaaggccactacataatggtaaagggaacaattcatcAAAATGACATAACAATCATAATTATATGTGCACTAAACATTGGTGTTCCCAGTTTCATAAAA----CTTTGCTTAACATAAAGGGTCACATAGACAGTTATCCAGTACAAATACAGTGGGTGACTTCAATAC-TCACT---GTAGATAGAAcatccagattaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatttataaagaaacacCTTAGATCAAATGGCCTTACCAGATGTCTACAGAACATTGCACCCATCAAATACAGACTGAATACTCTTTCTAGCCCTTCATGGACCATTCTCC

a score=6254
s chr3           116554071 362 + 160039680 tctaataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGG
s HiC_scaffold_1 119928901 354 + 233722169 TCGGACATAacagacttcaaagcaaaaaaaGTTATCAAGGATAAAGAAGGACATTGCATGATAAAGTAGG------TTTTCCAAGAAGACATA-CAATAGTTAATGTATATATGCCTAACCACAGAGTCTCAAGTTACAGAAGGTAAACAGCAATAGAACTACAAGGAGAAACATATAATCCAATATTA-TAGCTGGAGATTTCAACATCCTCCTATTAAAAATGAACAGATCTAGCAGACCGAACCGAAGTAAGGGCATAGTTGAACTCTACAATATCATTAATCAACTGAAAATCATGGACATCTACAGGTTACCTTTTCCACCAACAGCAGAATATATGTTCTTCTTAAACTCACATGG

a score=11318
s chr3           116554075 812 + 160039680 ataaaatTGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTCAATTCTGAATATCTATGCTC--CAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACAT----AAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAAT--------------GAGGAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAGGGA-AGCAAATTCACCCAAGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAG--TGGAAACAAGAAGAACT
s HiC_scaffold_1  87165109 773 + 233722169 ATAAATTGGATTTCAAGACCAAACT----AGAAGAGGCAAAAAAGGTCACTACCTATTGGTTAAGAGAACAGTTCAACtagaagagataataattat-----tCAGTGTTCACTAAACACTAGAAAGCCCAACTTCATAAAA------CTACTGGATATAAAAGGTCATATAAAT--GCAAACACTTAAAATGGGAGA--------CCCTACTGTCATAAAT----AGatca-----aaagaaat--------atcagagttgaactaA-----ACCTTTGAATAAATAGGCTTAATAGGTATCTATAGAGTGTTTCACCAAAAAGCAACAGAATGCATATTCTTCTCAAGAGTACATAGGACTATCTCCAAAATAGGCCAAGTGCTAGCCCATAACATTCAcataacaaaatgcaaaattattgaaattattccatgtatg-----agatcatagtgcaatgaaac------tagaaaacaaTGGGGGAAAACACCAGAAATTATCCAAGCATATGAAAATTAAGCAATGACttcttgaataatcaataggttgtagaagaaatcaaagagaaattaGAG--TTCTTGGAATTAAGTAATAGTGCCAGTACAACATATTGTAACCTGTGGGCCACAATTAAAATAGTGTTTAGGGGGAAGTTTATAACTATGCAcatccacatcagaaaaacagtgaGTCCAAATA--AACAGTGTAATGATGTATCTCAggatcatagaaaaaaaaaagaacaaccaaATCTAAAGCTAATACAcataaggaaattataaagatcaggacAAAAACTAATcaagactaaaaacaaaacaaatt

a score=9362
s chr3           116554089 587 + 160039680 CAACCCAAAGTTATCAAAAAAGACAAGGAGGGGCACTTCATACTAATCAAAGGTAAAATCTTCCAAGAGGAATTCTC----AATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCAACATTCATTAAAGAGACTTTAGTAAAGCTCACAGCACACATTGCTCCTCAAACA-ATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAA
s HiC_scaffold_1  25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGACATAAAGAGTCAGATAGA--CTTGAATATAGCATAGTTGGTAACTTCA-TACCCCAGTCTCACAA-------------------------TAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGC----------GGAATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGGTCAATAATAAG--TAATGAGAATGAA

a score=9190
s chr3           116554246 685 + 160039680 CTCCTCAAACAATAA----TAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACA---------AATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTC-TCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTT-TGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAGGAAAACGCATAGCTCTGAGTG--CCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGA-----ACAAAGGGAAGCAAATTCACCCA--AGAGGACTAGACAGCAGGAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAAT
s HiC_scaffold_1  96150018 656 + 233722169 ctctttaaaaaataaatcatagtgGGGGACTTTATTATTCCACTTTTAC-----------------AATTAGGAACCAAA----GATAAAGCAAGA--AATATCAGCGTTGAAACATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATAT-CTTAGGCTTTAAgcatacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTACATAAACAATAGAT---CACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGTTTACATCTGTAAATGaacatacagaaagaa--tagaGGGATCCCA----AATAACTTAAGGATGACTCATGAACTCCTAGAAAGTTACAAA-------AAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCA-AACAATATGAGGgactaatgaatcaaagagtgga--CTCTGAAAAAGT

a score=7962
s chr3           116554254 535 + 160039680 ACAATAATAGCGGGAGATTTCAACACACCACTTTCATCAATGGACAGAT-----------------------------------------------CATGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTA---------TGAAACAAATGGATTTAACAGATATCTACAGAACATTGTATCCTAAAACAAAAGGATATACCCTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCATATAA-TTGGTCACAAAACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATGCTCTCAGACCACCATGGACTAAGGCTGATCTTAAATAACAACATAAATAATAGAGAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAGGAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAAT-------------GAGGAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAG
s HiC_scaffold_1 162323314 574 + 233722169 acaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGATGAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaa-tatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAA----GCCATACAGCTTAGTTATa---------tca----atacaaaaa-attaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaaaatcaaa-ggcaagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacagaagaaatcaaatacttCATATAGTTAAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatttaagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGG

a score=11841
s chr3           116554584 842 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTAAG-GAAGGAAAAAAGAAAGAAATTAAAGACATTTTTGAGTTTAATGAAAATGAAGCCACAACATACCCAAACTTATGGGACACAATGAG---------GAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAGGGAAGCAAA------------TTCACCCAAGAGGACTAG--ACAGCAGGAAATAATCAAA-CTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGAGAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaaca----aagatagagaactccagaccaatttccctt
s HiC_scaffold_1  77585700 815 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaATCT-GTGGGCCACAATAAAAGCAGTACAGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcagg-ataaatagcatttt----taaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGACAATTTAATAC-----TCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattcttt

a score=10272
s chr3           116554664 543 + 160039680 AATGAAAATGAAGCCACAACATACCCAAACTTATGGGACA--------------CAATGAGGAAAACGCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACATACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAGGGAAGCAAATTCACCCAAGAGGACTAGACAGCAG--GAAATAATCAAACTCAGGGTTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAGTCAACCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATGAACCCTTAGCCAGACTCACTAGA---GGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGGCATAACAACAGATCCTAAGGAAATCCAAAATACCATCAGATCCTTCTACAAAAGGCTATATTCAACAAAACTGGAAAACCTGGATGAAATGGA-------------GAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAACGATCTAAAAAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCAT
s HiC_scaffold_1 133529731 528 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattcacacatcaggaaaacaga-----------------------------acctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaa-----gagcagaaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacata--aattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacagaactAGGATTAAAGTTCCCATTCAGCT--CAGCCATCAGCCT----TCTGGGTCTGGTgaacaaattaaaaa---cttcataccacaacgatatatgtgcactcat

a score=32057
s chr3           116555210 1704 + 160039680 TAGTCTCCCAAC-AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTctacccaattcattctatgaagccacaattactctgatacctaaaccacagaaagacccaacaaagatagagaactccagaccaatttcccttatgaatatcgagcaaaaatactcaataaaattctcgctaactgaatccaagaacacatcaaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaatccatcaatgtaatccattatataaacaaactcaaagataaaaaccacgtgatcatctcgttagatgctgagaaagcatttgacaaaatccaacacccattcatgataaaagtcttggaaa----gatcaggaattc------------------------------------------------------------------------------------------------------------------------------aaggcccatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggactagacaaggctgactactttctccctacctattcaacattgtacttgaagtccgagctagagcaatacgacaacaaaaggatatcaag------------------------tcaaaatatcactttttgaagatgatatgatagtgtatatataagtgaccctaaaaattccaccagagaactactaaacctgataaacagcttcagtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaaggatgaacaggctgaaagagaaagtcacaattctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctaaagaaagaaattaaagaagatctcagaagatggaaagatctctcatgttcatggattggcagaatcaacattgt-aaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccagctcaattcttcaacaaattagaaagggcaatctgcaaattcatctggaataataaaaaaaaaaaaaaacctagga-tagaaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctgtactacagagcaattgtgat--------aaaaactgcatggtactagtataaggacagacaagtagatcaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagctaaaaccatccagtggaaagaagacagcattttcaacaaatggtgctggcacaactggcagttatcatgtagaagaatgcgaattgat-ccattcctatctc--cttgtactaaggtcaaatctaagtggatcaaggaactccacataaaaccagagacactaaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacagggaaaaaattcctgaatagaacagcaatggcttatgctgtaagatggagaatcgacaaatgggacctcataaaattgcaaagcttctgtaaggcaaaagacactgtcaataagacaaaaaggccaccaacagattgggaaaggatct
s HiC_scaffold_1  55056282 1585 + 233722169 TAAACTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAACTTTAATGAAACTAAAAGGAAGAGAGGACCC--ACAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaaca------------aatcaacaaa-------------------------tcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACAC--TAATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaaggaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAG-gacc--aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct-----------------------------------------------------AAATA--------------------------------------------------------------------------------------------------------------------------------GACAGAACCAATGCAgtaaaaaatgacaatatttccTAAACTCATATac--atttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat------------aaaaaacaagaaacataatagcaaaagaaattctgggtaGCCATAGTAAAATA---GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTG---ATTACCACACAGGGAGAC-TGAGTCGGCACTCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattct

a score=14253
s chr3           116560662 309 + 160039680 CTAAAATTCAAAGAAAATTAAATCTTGCTTAAGGGAACATTGTAAAGTAACAATTCTTGATATCACGTGCCTCTTATGATCCATCTGAAAACCATAGAGAATTACATTGTTTTGTGTGTCACTGTTCCAAGAGACAAAACAAATTTAAACAGCTAAACCATCTTAAAAATGCACCAAGCTTATGAAGTCTCAAACAAAACTTTAATTTCCTGTACATACTCCTGTCAGATGAAGTTATTTCCTGTACACCACTT--TTGCAAACTGATCTTCTATTTCCTTTCATTTGACCTAGATCAGCTACGAGACCTA
s HiC_scaffold_1 170839936 283 + 233722169 CTAAAAGTaaacaagaagcaaa---------aggaaacatGGTAATGTA-------------TTACATCCATCATATGACCCATCT-CAAACCATACAGAATTACATCGTTATATGTGTCACTTTTCCAAGAGACAGA-CAAATGTGAACagttaaaacatttcaaaaatgcgTCAAGCTTATGAAGTCTCAAAGAAAACTTGAATTTTCTGTACATACTCAGATCAAATTAAGTTGATTCCTCTACATTGTTTCCTTGAAAACTGGTC----ATTTCCTTTCATCTGACCTAAATCAGCTACACGAACTA

a score=3947
s chr3           116567783 101 + 160039680 CAGTTAATATCTCAAACTCTTAAGAACACATTTTCTTTAGAATGTAAAATGCCATGTACAGAAGGGGGAGTAACTGGGAAAAGGACAACTCCCAAAGGAGT
s HiC_scaffold_1  33650738 101 + 233722169 CAGTTAATGTCTTAATTTTGTAGATGCAGTGTTTTATCAGAATTTAGAATGCTGGGCAAAGGGAGGGGAGCAATTCTACAAAGGACCACTCACAAAGGAGT

a score=21258
s chr3           116998786  802 + 160039680 GACATGTTTGTTGCttttt--------taaaaaaaattgtaattatatttatGTACAGAAAACTTAGT-GTACATTTAACCCAATTTAGTGGTGAGGTCTTTAGCCTTTGCCTTTTCCAGCTTGGCA-ATGTGAGCCACAGACTTAGGACACAGGACATTTCCTTTCCAGTGGCG-CGGATCTCGTCATAATCTGTCATTATAATTGGTCCTAATAGCTTCCACCAGCTTAGCCAGAGCGTCCTTGTCTTCCCAGTTAACCTGTGTGAAGGCAACAGTGATACATGTCTTCCTGTGGAACAGGCGCCCCAGCCTGGCCTTTCCTTTGATGATGTAGTAGGGCAACCCCATCTTTCGACACAGGGCAGGGAGGAAAGCCATCAGCTCAATGGGGTTGACATCATGGGCAACCACCATCAGCTGAGCCTTCTTGTTCTCCACCAAGGTGGTGACTGTACTGACTCCTGCTCGGAGAACAGGTGGTCTCTTAGTTGGGACATCACCTTTGCCAGCAGCTTTCTTCTCAGCCCTGGCCAGTAGCCTTTGCTTCTTCTCTT-----------GCTTTGT------------------------------CTCTGGCC--------------------------------TGTACTTGTGGGCAAGCTTAAGCAGCTGA--------------------------------------------------------------------------------------------------------GTAGCTGTT-------------------------------------------TGCCTGTC---------------------------------------------------------------------------------------------CAGGGCCTGGGTGA--------------------ACTGGTTAATGGCAGGAGGTAACTTTGTGCCACTCATAGAGGATGGCTCTTTGCTGCTGCAGCCTGATGTAGCAGGGCCATTTGACAAAGCGTGTTAGATCTATTTTAGCCTGGATGTCCTGCCCAATGCCGAAGTTCTTGGGCCTTTTCTCAAACAAAGGATTGACCACATTTTTGGCCTC
s HiC_scaffold_1  62307201 1075 + 233722169 Ggcatccttatttttttttctccagattaaggacaattt--gttatttttatgtacaGAAAACTCAGGAGTTCACTTAGCCCAGTTTAGTGGCAAGCTCTTTAGTCTTTGTGTTTTCCAGCGTGGTTTATGTGAGTCACTGATCTAGGACCCAGGACAGTGCCTCTTCAGTGCCGGCAGATCTTAGAGTA-TCTGTCGTTGTATTTGGTCCTGGTCACCTCCACCAGTTTAGCCAGTGTGTCTTTGT--TCTCAGTTGATTTGTGTGAAGGTAGCAGTGATGCAGGTCTTC-TGTGGACCAGACACCC-AGCCTGGCCTTCTCCTTGATGATGCAGTAAGGGACCCCCATCTTTTGACAC-GGGCAGGCAGGAACACAACCAGCTCGGTGGGGTCCATGTCGTGTGCAGTCACCACTAGCTGAGCCTTCCTACTCTCCA-----------------------------------------GGTCCCCAGGTC---------TCCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCCTC-GCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCTCAGGCCACGTCCTGGGTGAAttggtgtctcagttactttttactcatcgctgagacaaaatacctgaagcccaaagttgggaaaggaaaggtttatttcttacagtttttggaggtttcagtccacactcagttggctccaaggcaggcgggcatggctgggcctcagTTCGTGGCTGCTGCAAATAGcgaacaggaaccagcaaagagcaagacacaccttcttcctgccattacatcacatcctggctccacccctatgtgggtggagcactgacaccatcaatctaagcactagacaatgaaaatgcacaatgcaaactcatgaggcctgggggacacagacataaaccatgacaactggtTAATCACAGGTGGCACCTTCA-GCTGCCTACACAGGAT-------TGCCACTGTCAC----TGCAGCAGGGCCATTTGACAAAGTGGGTGAGAGCTCTCTTGGGCTGGCTGTCCTGTCCAATGCCAGAGTTCTTTGACCTCTTCTTAGACAGGGAATGTATCACCTTCTTGGCCTC

a score=9755
s chr3           116998786 382 + 160039680 GACATGTTTGTTGCttttttaaaaaaaattgtaattatatttatGTACAGAAAACTTA-GTGTACATTTAACCCAATTTAGTGGTGAGGTCTTTAGCCTTTGCCTTTTCCAGCTTGGCAATGTGAGCCACAGACTTAGGACACAGGACATTTCCTTTCCAGTGGCG-CGGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTCATAATCTGTCATTATAATTGGTCCTAATAGCTTCCACCAGCTTAGCCAGAGCGTCCTTGTCTTCCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTAACCTGTGTGAAGGCAACAGTGATACATGTCTTCCTGTGGAACAGGCGCCCCAGCCTGGCCTTTCCTTTGATGATGTAGTAGGGCAACCCCATCTTTCGACACAGGGCAGGGAGGAAAGCCATCAGCT-CAATGGGG
s HiC_scaffold_1 194457600 781 + 233722169 GACACGTTTGC-ACCAGATTAAGgacaattt--attgtttttatgtacaAAACACCAAAGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTTTTCCAGCTTGGCGATGCGAGCCACAGATTTGGGGCCCAGGACGTTGCCTCCCCAGTGACGACGGATCTGAAATGACAGATAAGCAGCAGTCAGTGTGGTTTGCCATCCACCAAGGCTTTCAGAGCATGAGCGTGGACCCAGAGGCTGCAAGGTTCTAGCAGTGCAGCACCTGTCCCACTCGAGCCCATTTTACCCCTCGGCCCCGAGAGGAAAGCTCCCCTCACCCAGGACAAGGCCTGCAGGGACTCAGCACTCACCTCGTCATA-TCTGTCATTGTAGTTGGTCCTGATTGCCTCCACCAACTTGGCCAGTGCTCCCTTGTCCTCCCTAACAAGGGGGGAGGGGACAGGCATTTAGCCTCAGGTTATCTCTGAGAGCAGGAATGACACCCTCTGTACTGTGAAACACAAGCCTTTTGCCTCAGATAAAGCATGACCACATGGCTTATTCAGGTGAAGAAATTCTTAACCATCATGGGCAAATGTTCAGATTCACATACCACACACGCTGTTCCCGAGGCCCAGACTAACACTTACGAGTTGACTTGTGTGAAGGCGACAGTGGTGCAGGTTTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTCCCCTTGATGATGCAGTAAGGGACCCCCATCTTGCGACACAGGGCAGGCAGGAACACAACCAGCTGCAAGAGGG

a score=5700
s chr3           116999146  95 + 160039680 GAAAGCCATCAG------CTCAATGGGGTTGACATCATGGGCAACCACCATCAGCTGAGCCTTCTTGTTCTCCACCAAGGTGGTGACTGTACTGACTCCTG
s HiC_scaffold_1 194458827 101 + 233722169 GAAACCCAGCAGACCTACCTCAATGGGGTCCACGTCGTGTGCGATCACCACTAGCTGAGCCTTCTTGTTCTCCACTAGAGTGGTGACAGTATTAACACCTG

a score=14897
s chr3           116999237 315 + 160039680 CCTGCTCGGAGAACAGGTGGTCTCTTAGTTGGGACATCACCTTTGCCAGCAGCTTTCTTCTCAGCCCTGGCCAGTAGCCTTTGCTTCTTCTCTTGCTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTGCCTGTCCAGGGCCTGGGTGAACTGGTTAATGGCAGGAGGTAACTTTGTGCCACTCATAGAGGATGGCTCTTTGCTGCTGCAGCCTGATGTAGCAGGGCCATTTGACAAAGCGTGTTAGATCTATTTTAGCCTGGATGTCCTGCCCAATGCCGAAGTTCTTGGGCCT
s HiC_scaffold_1 194459095 485 + 233722169 CCTGCTCGGAGGACGGGAGGTCTCTTAGTGGGGACGTCCCCCTTGCCAGCAGCCTTCTTCTCAGCCCGGGCCAGAAGCCTCTGCTTCTTCTCTTGCTTCGTCTCTGGTCTATACTTGTGGGCGAGCTTAAGCAGCTGGGTAGCTAGGAAAGCATCCTTCCATTAGGCCCTGCAGTTTCAGGTCCAGTCTGTCGCTTAGCATGATGTAAATTCGAAGTCCCTAGCAGTACTACAGGTTGAGCAGAAGCCCACAGGGCTACACACAGGGCCATGCACCACCTTTCCAGTTAGGCTGATTCCACACCCCCAAAGCCCACCTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCA-GCCGCTTATACAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTGTCCTAG---GAAGAGTTTGGGACT

a score=4383
s chr3           116999302 110 + 160039680 CCTGGCCAGTAGCCTT-------------------TGCTTCTTCTCTTG-----CTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAGCTGTTTGCCTGTCCAGGGCCTGGGTGAACTGGT
s HiC_scaffold_1  62307645 128 + 233722169 CCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCCTCGCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCT------CAGGCCACGTCCTGGGTGAAttggt

a score=4144
s chr3           116999529 59 + 160039680 CCAATGCCGAAGTTCTTGGGCCTTTTCTCAAACAAAGGATTGACCACATTTTTGGCCTC
s HiC_scaffold_1 194460178 59 + 233722169 CCGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTC

a score=5161
s chr3           117182444 303 + 160039680 ACAGAGTGCAGGTTTCACTGTGACGTTTCCATACATGCATATAATGTGGTTTGATCATATTCA---CTGTAACACATTGTTATAGCACCAGCCCCTCTCACTTTTATCCTTTATTTATCTACTCCCCTATTTTCTC--------GTTCTGGATCTCTAGTTACCTTTTTAGCTTGATGCCCCACCCCACTTGttttctagcttttacctcaaaggggggaaaatacatgtgatacttaacttttgtggggtgagcttatctcacttaaatgtaataatat-catatacatccacttttctgcaa---------cttcctttttt
s HiC_scaffold_1 169162646 299 + 233722169 ACACAGTG--GGCTTTACTGTGACATTTCCATAGGTGCACATACTGTGTTTTGATCAGTTTCACCTCTGTACTACAT----------------CTTCTTactcttcttctctccctctccctccttcttttttcccctttactaATTGTGCATCTTCTATTTTCtgatcatttcattattttatttctttttccttttagtttt---ctcataTGAGGATCA--ACATTCAGTACTTATCTTTCTATGTCTGA--TTATTTCCACTTAACATGATAATTTCCAGTTCCAtagattttcctgcaaatgatactccttcttctttt

a score=48319
s chr3           117216499 4180 + 160039680 [encoded data, 4456 characters]
s HiC_scaffold_1 106024429 3670 + 233722169 [encoded data, 4456 characters]

a score=8714
s chr3           117222900 149 + 160039680 AAACCACAATGCATTTAATTGGGAAGGTCCCCACTCATCTTGAGTTAGGG-GCTTTCAGTGCTGCTTCCTCCTGAAGGAGCATCCTTCTGTCAGCCTTGCTTTTCCACCTGTAGGCTGACAGAGGACAGTGGAGCAGCCAACACACAAGA
s HiC_scaffold_1  92900339 148 + 233722169 aatccaaaATGTGTTTAAT--GGGATGGCTTCAGTCACCTTGATTCAGGGTACTGTTAGTGCTGCTTTTTCCTGAAGGAACATCCTTCTGTGAACCCTGCTTTTCCTCCTGTCAGCTGGCAGAAGACAGTGGAGCAGCCAACACACAAAA

a score=26694
s chr3           117224115 1176 + 160039680 TCTAAATGATTT--TATTATATGACCATTAAAAATGCCCATGAAAACATTGTCTTAAGACTTATCTCAT--TTTTTCTATACATACT-ACCAAAGGTGGTTGAAAACAAATTATTAGTACTAAATTACTAATCTATATATTTTAATAGCAATAAAATAGAGATAATGAAAAAATCTGTGTTGTTTTATTCCTCTGAATCCTTCCTCTTTGAAGAGAAGGGCTTTTATGTTGAAGTTGTCTCCATTTTCAGTTTCATTTCCCTTTCATATTCTACACCAATTTTTAGAAATATATAAAACACAAAAATTTAAGAGAAAAAAATCATCC---TATTATTATCTTGCAATTGCAGGCACTTATGGAAGTGTGGCTACCCCATCCCTTCAAGAGATAAAAGAAAACAAAGGAACTTGGCTGCACAGTAAGCCTC-ACATAATTAGCATGGGGATTTTTGCT-GAAGAGATGGAGGCATTTTAAATTATTGTTCTTGCCTAAGCTGATA------TTTTGAATGAGATTTTAAGTTACAGAATCAG----TCTCAAAGCATCACAGTCCAAATATAAACATA--ATACCAGTTTGTTTTATTTCATAATATTTTCTTCAGGAGCTCCCATGAACAATTACATTCTGGAAAGTTTTTTGATATGGCATATGCTTGACAAAATTATGTGGGTGCCTTACAGTTGAGTGGAAATTCTACTGTACTCTAAAGCATCACACAAAGAGGAATTCTGGTAACCGTCAAGAGCATTCATTCTTCCTGGC-TATGTTTGTGTATTCAGCATGCAAGAAGGCTCTGGCTCTATGAGGATGATCACAAATC-CAAGCTTTGCCATCTTTGTGGCTTATGTAAGACTTAGAAGAAGGAGGGGAAAAAAAACCCTGTTTTTCATTTAGCTCAAGATTTGCAAA------------TCGAATCCACTGTCCTTCAGACTTAGAATTCCATTGCAGGCTTCATCTTTCAATATATCTGGAAGTAGTAGCCACCACTAAATTGTCTCAGTAGCATCTCTTTGTGGATTTCCCCAGCATGCTCAGTGAATATATAAAGACAAAGACAAACTCAGATGGTCATCTTCGCTTGCCTATGTTTATCTTTGT---------------TGTTGGTTTGTAATGGAGGAAGTGAAAATGGATGACTTCTATCCACAGTAACACTGAAATAcagtgctggcaagata-tctaagcag
s HiC_scaffold_1 106031805 1112 + 233722169 tctaaattttttcctgTTGTATAATCA----ACATTTCCACAAAAATACTCCTTT--GATTTGTctcatattttttctgtatttatttattataggtAGTT-------AATGATTGATA-----TTATTAACTTATT---------------------------ATGCTAAAATCTCTGTT-----ATTCTTTCAAATCCT-CCTct------aaaatgatatttatatagaaattgttttctttttccgtTC----------------TTTGCattagaattcttaaaaatataaaacgtA-----TTTTAACAAGAAAATCATCCCTTTATTGTTAATATGC---------CACTTATacaagtat----atatttttctttcaacagacagaaaagagaaaaggaaatttccTGATTTGTGAGTCTTTGCATAGTTAACA--GAAATGCTTGCTAGAAAACAGTgagacaatttaaaatatttttcttacataagCTGATAGAGATATTTtgtacaaaattttaatttatgcaaTCAGAGAATATCAGCACACAGCACtccatatataaacatataaagtcAATTTATTTTATCTCACAATATTTATCTCAGAAGCTCTTGTGAACAAtaatattctaaaaatttttCT-ATATGACATATGTCTGA-AAAATTATGTGGGAGGCTCACTGTTGAGAAAAAATTCCTCTATGCT-TATAGCTCTACAATCTTAAGAATGTTAGTAATTTTCGAGAGCAGATGTTCTTCTTGGAATCTGCCAGCATAGTTAGCACATACAGAAATGCTGAATGTATGAGGATGA--ACAAATAATACGCTTTACTGTCTTTGT---CTAATTAAAGCttacaacaaga--gaaaaaattaaatgagtacATTATTTAGTTCAAGACATGCAAACAACAGAGTATATTAAATGTATTGTCCTTTAGGCTTGGAATTCTACTGCAGTCTTCATTTCAGAGTATTTCTGAAAATGATGACCAACACTAGGTTGTCTATGAAGTGTC----TGTGGACATTTCTAGCAGGCTCAGTAAGT------AGTCAAGAAGAAACCCACATGATgatttttacttctctctctctctctctctctctctctctctctctctctctctctattggAGAAAG---AGGTGCATGATTTCTACCTGCAGCAAAAATGAGACCCAACATTTAGGAGACAGTTCAAACAG

a score=14493
s chr3           117226450 398 + 160039680 ATGAACTCTTGCATGTCTTACAGCAGTCTGCATGCTTGGAGAT-GCATAATGGAAAGATAGTCACAGTCTTTCAAGCACTTTGACTATTATCTATTCAACTATCACTATCTCCTTTGTTGAATGGCTTATAAAGTGGCTTTTATATAAAAAAAAAATCACCAACAAAATCCCTAATTGGTAAGAGTAAGAAGGTTATTAGACATGAAAGAAAATCCTTTGGTCTTTAAGCAGAAAGTAAATTTCTCTTCAAAGGTCAAAATCCCCGATACAAATTGAATAATGAAATGTGGCACAGTGTCTTGATCAAAACACTAGTTGCCACCTTTGATGTGCTTCCTCCACATTGGGTGTCCCTTGGGAAGGCCTTGTG-----AAAGCATCAAAGA-----AAGGAAATGCAAAAA
s HiC_scaffold_1 106033105 390 + 233722169 ATGAACTCGTGC-TGTATGTCAGATGTTCAAAGCACTGGGGTTAGCTTAATGAAAA-AGAATTGCAGTCTTCTAAGAGCTTTCAGTG----CCATTCAACTATCATTGACTCCTTTGTCAAGTGACTTATGCAATGACCTTTATA------AAAATTCATCAACAAGACACCTCCTTGATT-GAGTAAG---GTTAttatatatgaaagaaatttcttttttcttttagtagaaa-taaaaatttcttcaaagacCTAA-TGTCAAATACAAATTGAATAATGAAATGTAGGATATTGTCTTGATCAAAACACTAATTGCCAACTTTGAT-TGCTTCCTCTATATTAAGTATCTCTTAAGAATACCTtatgatacaaaatcttcaataaatattatgaaaatgtaaGAA

a score=4886
s chr3           117328215 189 + 160039680 CAGATCCTGAACAAATATCTTCC--------ACGATGTAGGAGTTTTCTTTGCAGGATACATTCAGAGAGGTATAGTTTGGCTTGCACACAGTCAGAAAGTATGGTGCCTGATATCCTGTGGAGAGCTGTATGATATCTGTAATGAGAGCTGTGGAGCACAGTCCAAACACATGGACACCTAGAAGTGAATGGAAAA
s HiC_scaffold_1 171283184 191 + 233722169 CAGATCCCCAGTACAAATGTTCCCATTGTTTACAAACTGGTGGTGTGCCTGGCAGTCTGTACT------GGTGTAATTCGGCTTGCACACTGTCAGGAAGTATGGTGTGAGGTGTCCAGTGACCACTTGTCCGGCATTTACAAAAATGTCAGTAGCAAAAAGTCCAAATGCAAACACTCCTAGGAGGAGattgaaaa

a score=4288
s chr3           117328220 177 + 160039680 CCTGAACAAATATCTTCCACGATGTAGGAGTTTTCTTTGCAGGATACATTCA-GAGAGGTATAGTTTGGCTTGCACACAGTCAGAAAGTATGGTGCCTGATATCCTGTGGAGAGCTGTATGATATCTGTAATGAGAGCTGTGGAGCACAGTCCAAACACATGGACACCTAGAAGTGAA
s HiC_scaffold_1 105583736 177 + 233722169 CCAGTACAAGCCTCTTCCCCACTG-ATGAACTGTGTGTACTGCTGGCATCCAAGTGCTGTGTAGTTGGGCTTACACAGGGCAAGAAAATGTGGAGCCAGGTTTCCTGTAACGACTTGTCCAGCATTTACAAAGATATCTGTTGCGAACAGTCCAAATGTATAAATTCctgaggaagaa

a score=7872
s chr3           117515687 198 + 160039680 TTCTTACAAAAACTTCCATGTCATTTTCCCTGGGGTGATTGTGCCTCTGTTCGTGCCAGGGCTAAGTTCTAAAAAAATCATTTTAGTTGGTTGGCTTAAGTTCCCTGCAGATTTCAGAGAGTTAATGTATTCATTAATTCTGCTCTT--CAGT----TCACAGCTGTATTGATCACATTTATGCTTAAATTTGAATGGAGGAAA
s HiC_scaffold_1 105689948 204 + 233722169 TTCTTACTAAAAGTGCCACGACATTTTCTCTAGGGTGATGGTAGCTATGCTTATGCCAGGGCCAACTTCCAACAAAATGATATCAGTTGGTTTGCCCAAATTCGCTAGGGATTTCAGAGGCTTAACCCGTACTTTCATTTTGATATCAGCAATTGCGTAGTAATTACATGGGTCATATTTATGCTTACTTTTCAATGGTGGTAA

a score=5587
s chr3           117625631 132 + 160039680 TGTTTGTTGTCTTTCTTTCTCAGGAATTTATGCATTTGGACTGTTTGCTACAGATATCTTTGTAAATGCTGGGCAAGTGGTTACAGGAAACCTAGCTCCACACTTTCTGGCTTTGTGTAAGCCAAACTACAC
s HiC_scaffold_1 105903310 130 + 233722169 tgtttttcacttttcttcc--aGGTGTTCATGTATTTGGACTCTGCTCTACAGCTCTCATCACGGATATCATACAATTGTCCACAGGATATCAAGCTCCATACTTTCTGACTGTGTGCAAGCCAAACTATAC

a score=4265
s chr3           117800835 196 + 160039680 CTTACCTGCTCATAGTAGCGGATGTTCTGCTCTGCCGTGTCTGTAAATGCTGACCTGAGGTCATTTTTCATGTTCTGCTTCCACCGCTCCCAGTCTGCTTTCAGGGCATTATTAGCACATTCCACTTTATCTTCAAGTTTTCCGATTTCCTCTGTAAGCTGAAGACACCACAGAGAAAGGTAAG---TCGATGTGTGTG
s HiC_scaffold_1 160929273 191 + 233722169 CTTACCTTCTCATAATACTGGATGTTCTTGTCAGCCAAGCCCATGAGCAGCTGCCGGAAGTCCTGCCGCTTATTGTTCTGCCACCTCTCCATGTCGGCCTTCAGATCGGCGTTGAAACACTCCACACGATCCTGACACTTCTCCACGTCTGCCGGCACCTGGA--------AGAGGGACACAGGGGCTTCATGTGTGTG

a score=5528
s chr3           117832849 208 + 160039680 TCACTGTAAAGCACATACTCGTGGACGACAGGGAGCAAGGCCTCTGACAGGCCAGCCATCCGCTTCTCCGTGGCCTTACAACACTGCTCAATGCAGCCGGCCATGCCTTTCAACGTGTCGACCAGCTCTTCCTCTGAGGCTGACCATAGAATATGAATAGGGCCGTATTCTTTCATTTCATCAAAATAGTCTaaaaaagaaaaaaaaa
s HiC_scaffold_1 160946883 208 + 233722169 TCAGAGTATAAAATGTATTCCCTGAGCACAGGTAGAAAGTCTTCTGTCATGTCGTCTGTCAGCTCTTCCAAGGCTGCAGAGCAGTTTCCGATGCAAGCTGACACACCCTCCAGGGGCTCTGCCAGCTCACCCTCTAGAGCGCTCCACGTGGAATACACAGGCCCGTATTCTCTCAGCTCTACAAGGTAGTCTGATGGGGGAAGAGAAA

a score=6934
s chr3           117838805 197 + 160039680 ACAGAACCATTTACCTCGGCCTGTGCAGTGAGGAAAACCTTGAAATCCTCATTAAATGTTAAAGTGGGATGGTCAGCGATCCTGTTCAGAAACTTGTGCAGCGCCTTCCTGCGGGTCTCAATGAAGTCATCATTGAAACGTTCCACCATGCCTTTGACGATAAACTTTTCTGGCAATGGC--TGAGACCAAAAACAAAA
s HiC_scaffold_1 160951270 197 + 233722169 ACAGAATTCTATGCTT--ACCTTAGCagtaaggaaaacattaaaatgttcaTTGAAAGACAGCACGGGATGATCTGTAATTCTTTTCAGGAATTTATCCAAAGCTTTTCTTCTGGTCTCCACAAACTCTTCTGAAAAACGATCCACAACACCTTTCACCACAAACTTCTCAGGAAGTGGCtatgaaaacatgaagaaaa

a score=4425
s chr3           117839869 187 + 160039680 AAGAAAACACAATGGCTATATTACAAACAACAAGCTCCACAAACCCTTATAAACTCACGGGAATAATGAGAGTGGGGTGTGCTTCTTCAAGTTTGCCCTTCAACCACAGGAAATCTTGATAACGTCGCCTGACTTCAAATTCACTGGAATCAAACTCCCCACGAGATGTCTGAGAGAAGAAGGAAAA
s HiC_scaffold_1 160962000 178 + 233722169 AAGACAACACA--GGCGAAGTGAGAAACAA---GCTGCAGTGATTACTA----CCTACGGGAATGAGATGGGTGGGCTGAGATTCTTCCAGTTTGCTCCTCAACCAGTCGAAATCCTGGTATCTTCGGCGAACAGAATATTCTGGCAAGTCAAACTCTGCCCGAGTACTCtgcaaaaaagaacagaa

a score=4990
s chr3           117846510 166 + 160039680 TACCTTGGTTACGATCCTGTAAGTGATGAAAGTTTCAATTGTAGTGACATGGCTCTCAGGTGCATCAACTGTAATGAAGAGATCCTTTAAATCTGGTC--------CATCTTCAAACTTGATCTGGTTTATCATCGACAAAGGGGATGTTGG-----------------------CATCATCGGGCTAAATGAGTTC
s HiC_scaffold_1 160973486 195 + 233722169 TACTTTGGTGGTGATCCTATAGGTGATGTAGGTCTCCATTGTACAGACATGCTTCTTGGGGTCATCAACCGTGACAAAGAGATC--TCGAGTCTCACCATCAATGTCATCGTCAAGCTGAAGTCTATTCAGAAGGGACGATGAGGAGGCTGGGCTGGAAGCACCTGCCGGAGTGCCACCGTTGGGCAAAATGAGatc

a score=4180
s chr3           118161891 138 + 160039680 TTTGATTAGCACATGTTAGTTGTACATAATAGCTGATTTCATTGTGACACTTTTATACACATATAAAATATATTTTGATCATTTTAATTCTGACTACACTTTCTTGTCTCCCTTCCATTTCCTCTGGTCCTCTTGTCT
s HiC_scaffold_1 102290744 138 + 233722169 TTTCATTAGTTCATATTAGTAATACAGAATAATAGGTTTCAATTTGACATATTTGCACATACATGTAACATACTTTGATCATATCCACCTCCCCCATTACCCACCATCGCCTTTTCCTTCATCCTCTTCTTTTTGTCT

a score=5691
s chr3           118361873 118 + 160039680 GTTAAATCTGAGCTGTAACATTTGGCAGGTTTCCTTGCTAACATTTGGCAATAATTGTTTATCAAATGCTAACAAGGAATGCTGCCAAATGTAACCGCTCCAACTGAACCATCGAAAA
s HiC_scaffold_1 104805916 118 + 233722169 GTTCAGTCAGAGCTGTTACATTTGGCAGCATTCCTTGTTAGCATTTGATAAACAATTATTGCCAAATGTTAGTAAGGAAACCTGCCAAATGTTACAGCTCAGATTTAACTGCTGAAAA

a score=3803
s chr3           119166982 66 + 160039680 TATACCTAGGTAGCATAGCATTTGCCTATCCTGTACCATACTCTCTGTTCAATCCCTAGCAATACA
s HiC_scaffold_1 100262412 66 + 233722169 TGTAGCTTGATAGCAGAACATTTACCTAGCCTGTACAAGGCCCTCTGTTCAATCCCTAgaactaca

a score=6235
s chr3           119191134 269 + 160039680 ttttAGAAAACAAGGATGTGTTTATCCCAAGGCAAATAGATGTTACTAAAGTCCAGAAACA------------------AATGCTCATATTCAAAGAGGAAAC------ATGACCTTTTCTAGACAAAGGACAAAG----TCACAAGTCTATATATCCAACTAATCCATGGA-AGTGGTTCCTGG---GTGACCTGTAGCAAA--GGCGGAATCCTTTTTTT--TTTTCAGTTGTCATCTTACAGTATCCGTAGCCTTGGGGTCTATTAAGGCTAGAGATCTTCCCAGCTTAGTGAGAGGTTTAG
s HiC_scaffold_1 146152044 305 + 233722169 tttaaaagaaataagaaatacttATCCTGAAATAAATATGAGTGATTATGGTCTGAAAACATGGGTTACAGTTACCTGGAATTAATGTGTTCTGCGATGAAAAGGTGCGATGAACTTTTACAGCCAAAGAGCAAAGAACAGCATAAATCACTACACTAAACAAATACACTGATAGTGACTTTAGGTTGGTAGCTGATAGCAAAATGGACAAGTCATTCTTACAAGTTTTAGATGTCATCTTACAGTGTTCTTAGCCTTTGGGTTTGTGTAGGCTAGAAATCCGCTAAGCTTAGTGATATATTCAG

a score=6895
s chr3           119240784 112 + 160039680 AAGTAAAAAGTGTCGAAATAAATGGCTTATGACATGAGTAGTGTTGAAATAAACGTTTATTTTAACACTTCATAAGTCATGAGCCATTTATTTTAACACTTTTCACTTGAAG
s HiC_scaffold_1 103988348 111 + 233722169 AAGTGAAAAGTGTTAAAATAAATGGCTCATGACTTATGAAGTGTTAAAATAAACGTTTATTTCAACA-TATACATGTCATAAGCCATTTATTTCAACACTTTCTACTTTAGG

a score=5385
s chr3           119328569 196 + 160039680 AGTTAATTAA--ATTCTTCTAGTGTTGATGGTAAGAAAGCTGAAACATTTTCAACTGAGATTGACACTACTCAAGACACAGGCTTCGGTGGTGTTTGTTCAGTAACACTCGGATATGTCACAGGATTGCTGTGAGAACATCTGAGAGCTATAATGAGCTAAAAGTCAAGCACAGGGGAAA-ATGTGTTCCAGACTGCTG
s HiC_scaffold_1 137652032 196 + 233722169 AGGTAATTAAGAATTCTGCTCATGATAATATTAACAAGCCTGGCATATTTTCAATACCAATTGCCATTACTCAAGCCAAAGGCATAACAGATATTTGTTCAGTAATACTCAGGTA-ATCATAGGTTTG-TGCAAG-ACACTTAATATCTACCATAATCATACACTTTAGTACTGGAGAAACATATTTTCCTGACCAGTG

a score=7576
s chr3           119328572 256 + 160039680 TAATTAA--ATTCTTCTAGTGTTGATGGTAAGAAAGCTGAAACATTTTCAACTGAGATTGACACTACTCAAGACACAGGCTTCGGTGGTGTTTGTTCAGTAACACTCGGATATGTCACAGGATTGCTGTGAGAACATCTGAGAGCTATAATGAGCTAAAAGTCAAGCACAGGGGAAAATGTGTTCCAGACTGCTGCAGATGTTCGCAAATCAAATCATATCTCTGTGAAATGCCATATAGAATATTCAGCTGCTGTAA
s HiC_scaffold_1 208764751 250 + 233722169 TAATTAAGAAGTCATTTAATGGTAATGTTAACAAATCTAGCTTATTTTTTACTCAGATTGACACTACTTAAGACGAAAGCATAATTGATGTTCCATAAGTAAAATCAGAGTA-------GAATATGTGAAGAGGCATCTGACATCCATAGTAAAATTAAGGTCAAGGACTTCGCAAAATATGTTGCAGACCATAACAGATGTTCTCAGATTAAATCATATTTCTATTAAAAACTACAGAG-ATGCTTAGTTGATAGAA

a score=4424
s chr3           119369139 217 + 160039680 TGGCAGGAGAAACGGCCTTCCATCAGCAACAACAAACAAGTTCCTTATTACTGACCCTGCCATCTG---TCCTGGTTTCCACATGGCA---CACAGAGGAGCAGGATTCTGCAGGGCTAGATTCAGTGTGCATCAGGC---------ATCTATCT--ACTGGTCAGATCAGCTGCAATATCTAGACTGCAACTGTA--CATAGACAGACACCTGGCTAACCTCGTCTACTGGAGAA
s HiC_scaffold_1  10885224 225 + 233722169 TGGCAAGAAGAATGATTTTC-ATCAGCTGTAACAAACAAGTTCCTCATCTCCAACCCTACCATCTGTCCTCCTGGTTCCCACCCAGAAATCTATATATGGGCTTGATTGAACAGGT-----TTCAGACTGCCTAAGGTCACTACACAATCCACCTTAACAGATGGCATCACCACAAACATCCACACTGTAGCAGTGGCCAAATGCAGA-----GGCTGATCGTCTTTGCTGAGAAA

a score=4571
s chr3           119850587 95 + 160039680 TGCTAAGGTGGGGATTTAGGGTAGTCCCTTAAGATCCAAATGTCAGGAGCTTGGTGCTACTGGGAAGCTGTGGGGCCTTTAAGAAGCCAGGCTTA
s HiC_scaffold_1  96430960 95 + 233722169 TACTATAGTGTGGATCTGGAGTGCTTCCCTAAGACCCATATGTTAAAGGCTTGGTGCTACTGGGAGGTGGCAGAAACTTCAAGAAGCAAGAACTA

a score=20236
s chr3           119854032 634 + 160039680 AGGGCAGTCTGACCACCTTACACTATTCTGTTCTATCAGGACCACAACATATGGTGTTCTTGTCT----ACAcctcacaggcacaccagaaaataatacgga-tgtaggtaccctgtgttccagtcaagtggccttgcaaaattacccatcacaAGGATATGCCAAAAAACAAAATATTTTTAATTAGTCTTTCCATTATGACCATTAAGAAACAATTGTGAATTCCCAGAAAAAACCCTGGTGGGTGTGCGTGTGCACACA------------TGCATGTataagctgattctaaattttaatttgaaatgcaaattgccaatagcaatgataattatgaaaaagagcaaagttaatgaccttacactaccatatatgaagatttattataaagccataccaattaaaaaccagcgcagactggtacaagaatagaagaggcagatggaacagagtatagaagtcagcagaagacccatgtatgtacagccactttttgtttttcctgtagtaaagatgcatctata----gcacaccgaggaaaacgtaatgatttcagcaagagggcctgagctaatttatattcatgtagatgaaaatgaatcgaaacctctatcttatgtcacacgga------aatttcagatggatcctagact
s HiC_scaffold_1 103445304 632 + 233722169 AGGGCAATCC---------ACTCTATTTTGTCCTCT---GACT----CAAATGCTTATCTTGTCAGAAAACGCCTCCCAA--CCACTAAGAAATAAAACTCAGCCTAGGTACTCCATGTCCCACTCAAGATGACACGTAAACTTAACTATCGCATGGATATACTGTGAAATAGAATATTTT-ACTTAGTCTTTTCATTATGAGCACTAAGAACCAATGGTACATTTCCAATGAAAACCTTTATAGggctgtgtgtgcatgcatatccACATGTGTGCATTGATAAGCTGATTCTAAATTTTAATCTGAAATGCAAATAACTAATAGCAATGATAATTATCACAA--AGCAATATTAATGTCCTTATGCTGCCAGATATAAAGAATTGTTATGAA-TTATAGTAATT--AATTTTGCA-AAACTGCTGCAC-AATCAAATAGACAAATGGAATagaacataaaatttcaaaaagtacTTATCTAGACATAGCCACTTCT--ATGTACCTA-AACAAAGATGCCATTATAATGTGCATATTAAGGAAAGGGTGATCATTCCAAGAAAAGGggctttattaatttatattcacACTGGTAAAAAGTGAACTTGACCTTTATCTCACATCATATATAAAACTTAATTTCAGATAGATCCTAAACT

a score=23652
s chr3           120520058 600 + 160039680 TATATATTTAAAAAGTAAAGCAATACGTATAC-ACACTTTAAGAGAGCAATGTA--CACCATAAA-CTCAGTCCTAGAGAACCAGT-TTGTTACCTATACTTAACATCTTATAGACTACATTTATAAATAAATAT--CTGGATAAGCTAACGGAAAACATAGAAG-GATCATTTCTTTTTCCTCTGCCTGAAGAAGAAACTGTTAGCCCAAATAAGATTTCAGTGGAATTACCATTGTCTTCATTA------------TCTGGGCTCTGCCATTTaaacagaacaaaacaaaacaaaacaaaaAATCTTCTTTACTGCCACTGGGTGAATTATGAACAGGAGAAATTAACAAAGGCAACTAAAACAAATGAAAGTGCACAACAATTGAAGCCTCGCTCACCTGTGGCCTCGGGGTGCCTGGTAATATAATGATGTCAATTAAAGAAAAGTTCCCCATTCCTGCTCAGGACTCCTGCCCATAAAATGATTAGCCTGCTCCTCAATGCTATCTTTCCAATGATTACCTGAAGTCATCTTGGCATGACAGTTGCCATTAGAGCAACTTGTTTTAAATTCTGCCTGTCATTTTCCAGCTGAGAAACAAAGCAGAGTCAAACAAA
s HiC_scaffold_1 102825829 613 + 233722169 TACATATATGAGATGCAAGTCAATACATATAtgatattttcaaagaatatCATAGCTCCCATAAAATTCAGTCCTAGAAAACTAGCATTGCTACCTACAACTCACATCCCTCAGG--AAGACCAAAAATAAAGACTGCTTGATAAGGGAAAGGAAAACCCAGAAGAGAGCAGCTATTTTCCCTA-GCTTTAATAAGCAAATGCAAACACAAATAAGAACACAATGATATTATAATACCCTTCAATACAACATGTCAGTTCTGGGGTCTGACACttaaacagaaggaaataaataaaaa---attactcaCTTTGCTGCCACTGGGTGAATTATGAACCAAAGAAATTAACAAAGGCAAATGCAATAAATGAAAGCAACTGACAATTTTAGGCTTGCTTACCTGTGTCCTTAGGGTAGTGTGTAATAAAATGATGTCAATTAAGAAACAGTCCTTTATTCTCATGCAGGACCCCTGCCCATAAAATGATTA-TAGGTTTCCTAATGCTGTCTTTCCAATGATTACCTGAAGTCATCATGGTGTGACAGTTGCCATTAGAATCATTCGTTTTAAGTTCCGTCTGCCATTtaccttttcaaaaaaaaaaaaaaaaaaaaaaaa

a score=6352
s chr3           120542224 147 + 160039680 CTACTTCTGCAGCTGGCACCTCATCTCCCGCTGCACTAAATCGACACTTCTGGAGGCAGCAGCTTCAG--AGTGACTGACGAGAGCCATTGCTTGCACAAGTGTCAATTTAGTGCAGCAGGGGACAGAGTCGCAGCTGTAGCGGGAGAG
s HiC_scaffold_1 102842089 147 + 233722169 CTCCTGCTGCAGCTGCTACTCCAACCCCTGCTGCACTAAATTGACACTTGGGCAAGCAATGGCTCTCGTCAGTCACT--CTGAAGCTGCTGCTTCCAGAAGTGTCGATTTAGTGCAGCAGGGGATGAGGTGCCAGCTGCAGAAGTAGGG

a score=8789
s chr3           120839014 534 + 160039680 tgCACATATCCAACTAGTTTCTTCAGATAGTATTCATGAATGCATAGGCCACAGAGAAGGTCCTATGTAAGGAGAACATGTGCCATGCATGA-CCTGGGAGAACAGTATGTAAATTGTAAC-ACCTGAGCTGCCACAGAGGAAAGACATTTTACAGTGCCCATAATATTTATTTTAACCAAGATGTTAATTGGATGTCTCTTGAATAACCCAAACTATT-------CTACCCAAATTCAATCAGATATACTATAAAGTATATGGGCTTGCTGCTAAATTTAGGATTATCTACTTTGGAGGCCTGGTCCCATCATTTTTTGGGTGAGTCTTACAGTGTATAATGA-----TGACTGAATGACCCATGTGAAGGTGTGTTGGCTCTCATGTCTGACTGATGCCATCTTTCTGTGAGGCACCACAAGCATGTGTTTTGTGACAACCATATATGAGTTTGTGGAGAGGACAGCTTACATCTGT-GTGCACTTCC--TACTTTCTCTTTAAACAAGAAATGCTATTTT-TAATAGCAACCATTTCTATTTCTTTAAC
s HiC_scaffold_1 102533324 498 + 233722169 TGTACACGAACAGTTAGTTTTATTGCGTAACAGACAACGATGGTGGGGCCCGTGAGAAAGGTCCTGGTAAGCAGTTCAGACagagcctataatcccaggaaaGAAATACGCAAATTGCAGCCACCTGAGCAGCTTGAGGGGACGGCCCTTTCA--------------TCTATTTCAGTTAAGggttttattgaatatttactgAACAACTCAACAAATTGAAATATCTGCCCAGACTCAGTTATAT---CTACGTGTTTTATACAGCTGTTACTAAATCTGGTCTTGCTTTTGCTGGAGGTCAGTTCCCATGGTTCTCCATGAGACTCCTCTGGTTCATAACAGATCAGTGCTTGAATGGTTCCTATTAAAGAGTATTAGCT----------------------------TGAAG--------GCATTTGATT-GTGACAACCACATATGAGTTTGTGGAGTGGGCCTCTCACATCTGTGGCAGATTTTCTATACTTTTGATTTAGAAAACAGAGGGTATTTTCCAATAACAAGGATTTCTGTCGATGTAAC

a score=10656
s chr3           120880236 236 + 160039680 TTTTGTCATAGGGATGAACCCATTTACTGTAGGCCAGGGCTG-CTCAAAAGGTAGCACGTCTACTGGTCTTTCATTTCCTTCGGTCTCCTGATGGCAGGTTTCACTGTGACAGCGGAAATGGTGTTATAAATCTAGGTCCTACCAGCCATTGTTGCTATGAAGGAACCACACTGCCAGATGTCAGTGGCCCACATTATTATCTCAGTCTTGCCCCAG-AGGAT--------CCTGGTGTCCTGGTT
s HiC_scaffold_1 226313228 246 + 233722169 ttttattaCATAAATTAACCCGTTTATTATAGTCTAGGGGTGTCTCAAATAGTGGAGCTTCTATTGGTCTATCAGTTCCTTCAGTCTTCTGATGGCTGAATTAACTGTAACCACAGAAGTGGTATTGTAGGTCTAGGCACCACTAGCCACTGTTTCCATGCAGGAACCATAGCGCTAGATCCCTGCAGCCCATCTCTTCATCTTGGTCTTGCCGCAGCAGGAGCAAGTGTACCTGGTGTGCTGGCT

a score=63826
s chr3           120939639 3557 + 160039680 atggtagaggacatcaagaaggactttaataaatcacttaaagaaatacaggagaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttacagaaaaagagg----aaaaaacatac----aaacaggtgatggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAG-CGAGGCAACACTAGAGATAGAAACCCTAGGAA--AGAAAT----CTGGAACCATAGATTTGAGCATCAGCAA---------CAGAATACAAGAGATGGAAGAGAGAATCTCA----GGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGA--TGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGAT---GCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGA-GGGAGAAACCAAAGTATTCCACGACAAAACCAAA-TTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCA-ATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAAT------------------CCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACA-------ACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATT---CAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTT-----GACCTTCTAA----ACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA-----GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGC---CACTATTACTCTGATAC----------------CTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC----AGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG----ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC-----ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAAT---ACCTAAACATGATAAAAG-CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaa-agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggag
s HiC_scaffold_1  65294954 3466 + 233722169 ATTGAAGAGGAAATCAA--AGCACAGTAG--AATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaA--------TAACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACCAAATAAAATCCAGGAGatcaaaaattacactgaaagcaTAGGCAGGAGAAATGACAAATGTGAGCACAGAGTACT-GAAATAGAAGATGGAG-CTGATGTTGGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatgga----gccaacagctgctagat------------gaaaTGCGG-----------AAGACTAAATTAAC---TGGAAGGAGTAAAAATCAGAACGAAG---TACAAAT----GGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAG--gtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACC--CAAAAAATTCT--CAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaaaaaaaaaaaaaaaaaaaaacctataaaaataaatacaccaaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTG------------AGACCCAGCAGTATGCTGTATATCAGAAAGTCATTTAATCCAAAAAA--------CATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGATTACCACAt-------attaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGACTTAGAAGATCTGATA------TATACAATTATATTGAAGAACTTCAATACCACACTGACACAAA----CATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGAACATTCTAACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaagg--taagacCTAAATC-------TTAGAAATTAGGA-------ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAA---TAAGATATAAAGACCCTGGAATAATACAGTCACAG-----CCAATGAATTA-----AACCATAAATAAGAACATCTATGAACAAATATAAACCCAG-----ACTACGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAG--CAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGtca---cacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAATACAGAAGGATTCCTTTTAcaaaagggaagggg

a score=100456
s chr3           120939641 4836 + 160039680 [encoded data, 4979 characters]
s HiC_scaffold_1  64792845 4737 + 233722169 [encoded data, 4979 characters]

a score=9694
s chr3           120939725 709 + 160039680 aaaacaggaaaacacaatcaaacaggtagaagtcc-ttacagaaaaagaggaaaaaacatacaaacaggtgatggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGCGAGGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACA-ATCAAAGAAAATGGAAAATGCA-AAAAGATCCTAACTCAAAA----TATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCC
s HiC_scaffold_1  87508822 669 + 233722169 AAAGCAGAAACACATAAGCAGTTTTACAAGATTCTATTAAAGAAGTAAAggattttactaataaaatgctGGATGAACTTaaggaagaaacaataaa--tagTTAAAGAATTAGAcattatgaaaagaaagcaaacaga---aatacagaatgtGAAGAATTCAGTAGAAAGTATGGTGAGCACA---TTCAGC--CAGTATCAGGACAGACAGCATGGAAAAA----------------------CCGAAGACAAGATCGATGTAATAGATCA--TAAACTGAATGATGTTTGAAAAATGATAACAGGAAAGCTATATCCAGGAGCTGCTAGATGGCTCACAAAAACCCCACACCAGATTTATaggcataaaagaaaaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC

a score=83509
s chr3           120939764 4572 + 160039680 [encoded data, 4796 characters]
s HiC_scaffold_1  71797446 4446 + 233722169 [encoded data, 4796 characters]

a score=23098
s chr3           120939837 2706 + 160039680 GACACAATAAAGAAAACTCAAAGCGAGGCAACA---CTAGAGATAGAAACCCTAGGAA---------AGAAATCTGGAACCATAGATTTGAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAA------CGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCT--TCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATG---CATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT--AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAG-AGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACA--GAATGCCACCTTTAACAACTAAAA-TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAA-ACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACAT-----TCACTAAAGAAACTTTAGT--AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGG--ATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATG--GAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAA--AGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATA-CTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAG-------GATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC------CAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCG--------------------------------------------------------------------------------------------AATCCAAG-----------------------------------------------------------------------------------------------AACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAG--ATCAGGAATTCAAGGCCA
s HiC_scaffold_1  89593996 2654 + 233722169 GATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaaga----aaagataaacg-gGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCAtggaaaaag-------------------aactaaaaat-----gaaagattaaga-ataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACTAAAGCAT-----AAGCATCTATCCATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCTCATTTAAAGGCATTTG----CTTC----TCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAACTCATGACAAGTA--------------AGCCAGCattccagaaaatattta------aatatcacaaaGACAATGAGTATAAGACCATGTAAAGTATAA--atttaat---tggaaaaat------aaagacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAA-TCTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGATCT-----GGAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaaca-aaaatctttaagt--GACAAAGAATGCCACTACAC-ATTGTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGG-------AACACAAATGCCTGCACATGttatttcataaaacaatttCACTTGAAAAGACAAA---CACATC------CCCAAAAATATAGTAGGGGACTTCAACAC--TATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG--ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT----------------------------TTTAAA---------------------GTTCTATTGCATCACAatggaatgaaacta------------gaaattattaggaaaaaaattacatgaatatGCTGAAATTGAG---------TTAAAATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTAC----AAAAGCAAGAGTGGTTCCCAAAAAATAACCTAATGGTa---ctaaag-----agaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat--------taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=17570
s chr3           120939996 1164 + 160039680 AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAA--GACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA--TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA--ACCAAATTCACGCATTATCTCTCCACG--AATCCAGCCCTTCAAAGGATAATA----------------ACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAC-CTTTAACAACTAA-----------AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGA-----------------------ACTCT-------CAATT-CTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGA
s HiC_scaffold_1  67576299 1162 + 233722169 AGACAAAATAGTGAATAacaataaag---aactcaaagaagctaagaagaaaaatagacaataaGAAAAGACTAtgca-acagctgctag------atgatagCACAGATG---AATTCA---------CTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagtttaaaatacaagtaactgacatttataaaacattgaaCAATTATGAT--AAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTT---GGATGATATATGAGTGCTAAATCAGCTCT---Aaggaaaatacttaagaatattctcaacagaaacaa--taagtcagacacagctaaaatcacagaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccgg--aaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaa

a score=84534
s chr3           120940008 4378 + 160039680 [encoded data, 4548 characters]
s HiC_scaffold_1  91695044 4298 + 233722169 [encoded data, 4548 characters]

a score=4591
s chr3           120940030 358 + 160039680 AAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAA-----------------------------------------------------------AATTATTGA----------------------------------------------------------------------------------------------------------AGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACA-TACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA---------TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAG-CCAGAAGAGC
s HiC_scaffold_1 139027905 529 + 233722169 AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAATCAGGGATAGGGCCTTGGCTCAGGGTTAAAGCTCCTGTGTAGCACTGTAAGGGCCAGGGTTCAATTCTTAGCAAAGGTAAGAGGGAGGAGGGATGCAGGGAAGGAGGgatgggaaaggaggaggagaagaaaaggaggaaggaaaggatgggtggatgggttCTGTAAAACAACACCAGAAAACTTCCCGAACCTTGGGAA--AGATACAGACATCCAGTACAGGAGGCATTTAGAACCTCAAATAAGCATGACCAGAAAAAACTCTCCCCACATCACTTTACAGTTAAAATGTCAAGAGTACAGAATAAGGGGAAGAGTCCTGGAAAATCCAGGACAGCAACAGCAAA---TCACTTGTGCTATGACAGGGCACCTATCAGAGTAACTACAGGGTCCCCTGCAGAGACTCTTAATGACCAGGAGGGC

a score=19419
s chr3           120940079 1514 + 160039680 AATAGGAGTGGATGAGAA---TGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTG-AAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAG--AATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT-----------------------------------------------------------------------------------------------ATACAGACACTAAGAGAACACAAACTG---------------------------------------CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGG-AGAAACCAAAGTA-TTCCACGA----------CAAAA---CCAAA-----TTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCA-ATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTA---ATCCCTCAACAAACCTA---AAAGAAGACAGCCACAAGAACAGAA---TGCCACCTTTAACA----------ACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGC-------TGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGG-AGACTTCAACACACCACTTTCACCAATGG-------------ACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGA------AAGCCAACA-------TTCACA------------------TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAA
s HiC_scaffold_1  55628325 1684 + 233722169 aataagaataaaagaaaaactggaagat----gacT-AAAGAggcataaaatttatttactgaaataatagcaaaaaaactTTTTGAAGGTAGGGAAATAATTCACTATGTAAATATGAGGTATCTA-AAACCCCAAAATAGCTAGAGCTAGAACAT---CTGCTCTTGACACTtcctaatcaaaattccaga--aatttaagGAAATCagcaaatattaaaagctgctaaagAAAAGTAGCAAGATACTTATAAAAGCAAGCTTATTAAAATTAtgacagatttctcagcacaaatttTAAAGGCCAAGGGAGCTTAGAATGAAGTTTTCAAGCCGTAAAAGAAAGCAGTTGTCCAGGAaggggtataactcagtggtacagaacCTGTCTGGTAAGTGGAAGGTCCTGCGTTCTATTTGCagtacaaaaagcaaaacaaagcaaatcaagcaagcaagcaaacaaacaaacaaataaaaacgcTTGTCAGGCTAAGCTACTCTAGCCCACAAAATT---AACCTCCAAAACTGACAGAAAATAAAGCACTTTCATGGACCTTTGTCCCAAAGGTCCCAAAGAATCCCAAAGAACTACATGCCCACTAaaccagaatttcagaaaata----tataaagGATTCATACACAGGGAGACCATCAGCACCAAAGAATCTCCCAGAATGTATACAACTGTCTGGAAGAGTAGTTAAATAGAAAAG----GAGGGCAAAACCCTGACACAGTAAGCATTGGAAAAATGCTGGAATGATAGTACCCAGTAAATACCTTAC---AATAATTCTCAGTGTCAGTGATCTTAGCTCCACAGTCAACAGACTGAGACTAGCAGATTGgatcaaaaatcaaaatgcaaccatatacacacacatatgtacagtAGATACActttattcaaaaggaaaataatagagtAATTGTGGAAGGCTGGAAAATGATACTCTATGCATCTGGGGCAATAAAGCAAGCAGGAGGAGCTATCTTATTTTCAGACACAACAAGCTTTAAGCTAAAACTTATTAAAGAC-ACAACGATGGATACTACATACTGGTAAAGGGAACAGTTCAAC-AGAAGAGATGATAACAGTAAATATCTGAACTCTAAATGTTGGTATGACCAATGTCATT-----AACACTACTGGACCGCAAATGACAGATAGACACCAGTACAACCATAGTGGGTGGATTTCAGTACACTA-----ACCAATAGATGAAAAGTTAACACAGGTCAAGTAGATGAAAAGTTAACGAGGAAATATCAGAGTTTAATCATACCATTAAGTAAGTGGACTTGACAGAAATCTACAGAGTGTTTTATCCAACAACAGAATG--------------CAGCA---CGTGG--ACTTTTGCTAAATAGAACATACGTTAGGCCATAAAGCATGCCCAAATACATACCAAATAATGAAGA--ATCGCATGAATTCTATTGGATCACAATGGAGTAAGAgaga-aatcaatggaaaaacaaacaacaaacaaaacaaaacaacaataaaactcCACACAGACATTACACAAACACTGGAGATTAAACAATATGTTACCAAATAACCAATGGATCATAGCAGAAgtcagggaagaaataaaaaagattctaGGATCAATTGACAATGGAAGCACAATATG-CAAAACATAAGGGACTCAGTGAAACAG--TCTAAGTGGGAAGGTTATGGTCCTGAATGCACCCGTTAAAAAA

a score=30181
s chr3           120940109 2468 + 160039680 ACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAACGCC----CTAGAAA-----AAACAA-----------------GAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGA--AACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGT-------------------------------------------------------------------------------------------------------CATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGA--AACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG----CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGG-ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGA----AGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG---ACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT--CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA----TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAA
s HiC_scaffold_1 116834065 2369 + 233722169 ATTCAAAGGTC-ATAAAACATATTCAC-----TTAT--AAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaaga-aaaatacaaaaagttgtTACATAAAAAGAGCAG------CAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATACAAT---AGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaatt--------aaacaaaaggaaaaaaaacaaaagaat----tggcAT-TGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAATACT-GAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagat------taatAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGA-ACAACAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCA---------------------ACTTCA-------CAGAACAAAAAC---------------------------------TGCTGTACATATAAGG-------------------------------------AAAAACATATCA------ATACAATTACAGTGAGAAA-TTCAATAACCTACTCTCAAAACTAG-CAggtcaacaagacaaaaaattagca-----aaactTATCAGTTAAACAATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAAA---------ACATG---ATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAAC-----AGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgatttttaaaaaccctg---------------------------cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=27489
s chr3           120940113 1662 + 160039680 AAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCT----AAAGAATGAGATGCA----------TATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAA-----AACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAA-----AAAAACCAATACA--AGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACA---TTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTG--ATGAA--ACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAG---AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291805 1557 + 233722169 AATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgcAAATAAATGATATACAGGGACtggatttaaaatgcaaaataagcaTATAG------------------CCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTA-----CTGCTAAATCAGTTTTGCAAA----ACTTACTGAGTTTTGCAAAACTTACTCAGGAGAGCATGAA------------------AAGGAGTAAATCTT--------ATTAAAAGA-----GTCAATAAATCAGAATCAAAC----AATCAATGAAATAACAGGGAGCAATACATACCATTCC------------AAC-----TGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTCACAAACAGGCTAtctaaaaaatcagcaaagaaaca-------attgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGTAAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACG-----------------GTTAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=55177
s chr3           120940114 2822 + 160039680 AAGGTCCAGCAAACATCTTCAACAAAATTA-------TTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-----------------GAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACC------AAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAA-AAAAACCAATACAAGAACGGGAACAACGCCCTAGA-------AAAAACAAGA-AGGTAATCCCTCAA-CAAACCTAAAAGAAGACAGCCACAAG---AACAGAATGCCACCTTTAACAACTAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCA-AATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCACCAA-TGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGC--------TAGACTCACTAAAGGGCACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA-AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 128206407 2921 + 233722169 AGGATATAAAAAACCTTGTTAACAGGTTTACTTTTGTTTacaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtc-aactccaattagccatgattaaaacaaagaaacaagaagagaaaaaacaccTTACACTGAGGCATATAATTGTCAggattccaaaaattcaacataggaaaataacattaaaaagtattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGGAAAggttgcagtgaagtatttcaagccctgaaagaacaTACCCCCCAGCACAGGTTGATATAATCTGtgaaactttccttcaaaattggtggagaaacaagatacttccatgacaaagaacacctggttgaaattcatga---------ccaccaagccaacactCCAAA-------AACATTCTGAAGACTAATATACAAA-GAGAACAAAGACTCCAATTTCATGAGCCCCAAGAGATTTAATCCATcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGAGAAATTAGATGACAGAAATAAGTTAACACACATCCTTCATAATCACCACTGTTAGtggactcaattcaccaatcaaaagaaacagattggcagaatggctCAGGAAACAAGATCCAGggttggagatacagctcagtggcacagcgcctactTAGCAAGATCAAGCTCATTAGTTCcttgcccagtaccaaaaacaaaagaaaagagaaacaagatccaacaatatgcggCATACAAGAAATATGTTTAACATGGAAAGATACTTATACATTAACAGTCAAAGTgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatt-tgcagtcCAACTGgattcaagccaaaactgatcaagcCA--CAAAGCAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataacaatcataaatatgtatgcccCCCAGGACCAGAGCAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTACTGCCACAAAATGGGCAGATCAACTAGACGACAAATCAGAAAAAGA---ACTGAGTCAAACTT------TTGAACACATGGACTTAGTAGTTGTCTACAGAGTTTTCCGCCCCACCActtcataatacacattcttctccaaTCCTcaagttttgttttccaaaataacCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaagaaactgaaatcattCCATGCATATTAGCAGACCCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAATGTCC-TAcgaatatggaaattaaataacatccttgtgaacaaccagtggatcacagataaaattaaagaacaaattagcaAGTTTCTACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccatacagagaatgaatgaattaaagagGTAGTTCTT--GGAAGATGAAGTAAAACAGACAACCTCTTAGCAAacattgtaaaattttaaaaaggaa-----acaaagtcttagattcatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATCCCTATGTC-ATATGAATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAATGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgactAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGAACTACCTAATGCTGCCACTCCTCAAACTCTAGTGAAGTCGAAAGGTAATCAGTACTC--CCTaagtcatccctggaagcaagcattac-ctgtTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAATCTACCTAATGAGCATAGACAGAAGAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACCAGgtaggattcatcctagggatgcagggaGAGCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAACCAAGGATAAAAACCACTCAATCATCTCATTAAGCACAGAAAAATCATCAGTTAAATGCCAACACCCCTTCAAGAGAAAAACTGTACAGAATATCCAACTATATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatccaTTTTAGTAGCATAGCTGGGTACGAAATCAACACACAAATATCAACAGCATGCCTATACAAATGtaacaaactcagtgagagagaaattaaggaaac

a score=79186
s chr3           120940124 3960 + 160039680 [encoded data, 4329 characters]
s HiC_scaffold_1 135385634 4029 + 233722169 [encoded data, 4329 characters]

a score=50946
s chr3           120940132 4026 + 160039680 [encoded data, 4467 characters]
s HiC_scaffold_1  55842561 4139 + 233722169 [encoded data, 4467 characters]

a score=10388
s chr3           120940138 768 + 160039680 AAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT-TATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTA----TCATAGAGGGAGAAACCAAAGTA-TTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAAT-------------AACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAG------------AAGGTAATCCCTCAACAAACCTAAAAGAAGA--CAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCC--TAATATCT
s HiC_scaffold_1 129057714 743 + 233722169 AAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATAGAAAAAAACCCTGAAGTCC------AACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtg-----aaataaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaa------gaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAA-TGGTT--TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta------aaattaAGACtcaaaaacagtattccatgcaacatgaACCTAAAAATAAGTAGGAGTTGAcatacagtgatacct

a score=37917
s chr3           120940147 2925 + 160039680 AAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACT--AAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC------AATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAA-----CCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACC---AATACAAGAACGGGAACAACGCC-------------------CTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT---CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAAC-----------AAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAAT-AGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCT---TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA---AAAAGGAAGCAAATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGG---TACCAAAGTTGAATCAGGATCAAGTTGACCT-TCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG-----AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACA---AACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTC-TGGAAAGATCAGGAA----------------TTCAAGGCCAAT-------ACCTAAACATGATAAAAGCAATCT--ACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA--ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaaga------------tctcagaagatggaaagat
s HiC_scaffold_1 171883955 2733 + 233722169 aaaaaaactttccaaatatggaGAAAGAGTCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAAGTATGAAGTAATGAGATACC-------TTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc-----aaactagcactccaa-----aatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCAAATGGTCCAACCAAATGACTACAGCATAC---AGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagaga---aaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCC-AAATAGAAAACATACTCATCTCATAAAGGCATACTTAA-GTATTCATAAGGAgtcaaaattattccatgcatac-aTCAGGTCATAGTGCA-TAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACA-CAAGAACTTTGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaac-----agtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaa-----------------caataaacaaa--caagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGTTCT----CAGATAACAGAAATTATCAAAAATGAAccaaggccaga--gatttagctcagcagccc---------------------agcaggtgtga--agtc---------------------------atgagttca---caGAGCGCagtaaatcatt--aaaaagatcatacatcaaaACCAACAAGGGTTTCTCCCAGGGATGATTCAACAgacaaattaataaatgcaatGTGTCA--------------------------CATAGACAGA---AGCAAAAATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAA-----ATGCAACAATTCATGGTAAAagtct-------------gaagaaaataggtatagaatgATCTTTTCTGA----------------------------AGCTGGT----------AAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgggaaaaactgaaagctt-tccctctaaagcCAGGAACACagccaagcgtggt--ggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataa----aataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaaggg-tacgtacaagaaaa-aagaaataaaattatcattattttcagataacaTGAGCGTCTACAT-AGAAAACCAAAAAATTCCA---------CTCCAAAATTAATATCCA---------AAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaaca----ggaaCTAATCT----AAGACAGTGAAAGTCCTTTACAATGAAAACTCCTA-----TGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=107030
s chr3           120940150 4329 + 160039680 [encoded data, 4849 characters]
s HiC_scaffold_1 195237049 4703 + 233722169 [encoded data, 4849 characters]

a score=29806
s chr3           120940155 1970 + 160039680 TTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAA------------AACCAAATTCACG--CATTATCTC-------------TCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATAC------------AAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAG---ATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTA--TGAA-GAAACAAGCAGGAGTAGCCATCCTAATATC----------------------TGATAAGA--------------------------------------TTGACTTCC-----------------------AACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTA----GTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACAC-CACTTTCACCAATGGACAGATCA--TGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCT----------CAACAGATTCAAAAATA---------------------------------------------------------------------------------------------TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-AGAAAAAACGG----------GAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-----------CAAATTCACCCAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT----CTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881341 2293 + 233722169 ttcccaagtcaaaaaaaaaaaaaaaaaggaaaga---aagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-GCCATATTGTTCTCTAAGTACCAGGAATTCATCACAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTC---CTtcagaaatgaataaag-aaagtatttccatgacaaggaacacatctaaaaaaaattcatgaccatcataacagcatttaaaaaattctcaagtgTAAcctagaaagaaataatga-----agccAGCAATACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaagg------------------aaaaggaaaaaataaggagATCAGCAGAAGGACTGTAA----TGGgatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA------AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggtatagacatgaaaaaatcaga-taaaca------ccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAGACTCAAAAcc------atacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=66030
s chr3           120940188 4275 + 160039680 [encoded data, 4581 characters]
s HiC_scaffold_1 189257286 4392 + 233722169 [encoded data, 4581 characters]

a score=65584
s chr3           120940199 3337 + 160039680 CTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTG-CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT----------------------AATAACAGAAAAAAACCAAT-ACAAGAACGGG-------------------AACAACGCCCTAGAAAAAACAAG------AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTT----------AACAACTAA--------------------AATAACAGGAAGCAACAAT-------------------------------------------------TACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTC---CAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAAT-------------------------TCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAA----------------CAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAG------CAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTT-AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaa---------------gtattagccagagcaattcga----------caacaaaagg---------------------agatcaaggg---------------------------------------------------gatacaaattggaaaa------------------gaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat-----------------------------------------------------------------------------------------------------------------------------------taactcaaacaagt--------------------caatg-----------------------------------------------------------------------gcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcgg-cgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgca--------aattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtac-----------------------------------tggtat-------------agagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaa---------gacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttg
s HiC_scaffold_1 133193526 3792 + 233722169 CCATATAGCTCCAgttagccatgat---aaaaaaattacagcaaaaCATGTAAAAGTCATGATTCCAGAAACTCAAAATAAGATCAtaat--taaaagttgttagagaaaagaaacaaatcacctacaaaggaaagcccatcagaatcacagctaacTTCTCACAAG---CCCTCAAATT---AAGGacttgaagtaaaatatttaaagccctaaaggaaaacaacctttcaacccagattgatgtaacctataaaactatctttcaaaattgatggagaaataagatacttctatgaaaaGAATATCTGAGTAAATT-TTtggccaccaaaccagcactctaaaATGTTCTCACGCatgttctagaaagagataacaaagaatTACAACTCATAAGGCCaaggctttagctcagtggcccaagcacctacctggcaagtgcaaggtcatgagtttgatctctgct---accaaaaaaaagaaaaaaaaaaaaaaagaatacaactcCTTGAATcccaagacaatgaatgcaattggcaaggcaaacaaataaaaggaagaaaaaataagagagctaacaacagaaaaatatcatGACAATGACtgaataagtcaatacatatcagttataaccactaatgttaatgatctcaattcatcaatcaaaagaaaca--ttggcagaatggatcaagaagcaagatgcaacAATGTGCTGCATAAAGGAAACacattttacttaaaaaagaaatgcatagacA--------GAATCAAAGAGTGGGAAACAATAGTCCATGccacaagaacccagaaaaaagcagaagtagctattctatttgcagacaaagtggatttcatcCAAGTCAGAGT----AAGAGAGACAAAGGG---CACTACATCCTTATGAAAGa-------atctaagaggaagagataacatatatatatatatatatatatatatatatatatatatacagcaaATACTAATGCATCCAACtacatataaaaaatattaatggacacgaaaaatcaaataaacactaatacaattatattggGGTACTTCCATACCTC-CTGCCACAAGT----AGATCATCTAGACAAAAAGTTAACAATGTAATATTAGAACAGAACctaacttttgaacaaatggacttggtagatacctacagagtgttccaccctacaacatcagaatacacattcttctcagctacacacgGGATGTTCTGCAAAACTGTCCACATACTATCTCATAGAACATaactaagtaaatgaaaaggaattgaaatt-ccccatgcatattatcagaccatagtgcaacaaaattggaaattgatagtaaaagaaaccaaaagaactTCATAAACTGATGGAAATTAAAAGTggcatattaaaaataatatccttctgaacaaccagtgggtcacagatgaaattaaagacaacattag----TTTCTACAagtaaatgataatgccagtgcAACATATCAGGACTTATGGGAcagaatgaaagcagtccta-gagTGAAATTTTTAGCGGTGAGCACTCATGTCACAAAAAATGAGCAagctcaaacaaaacaaaacactttaatGTTGCACCTTGAGCttctagaaagaaaagaa-caagtcaagccca---------acaaaagaaaattataaagatcagagcaaaaattaatgcaactgagactaagaaaacaatacaaagaatcaatgaatcaaagagtt----ctttgaaagattaaataaaattgataaaacccttagctaaccttatcaaaaaacgAAAGATGCAAATcc----------atttaggaatgaaaaagacGAAATCACATCAGATCCTGCAGGAATCCAGAAGACCATCTATCCTTACTTCaagaacctgtactctaataagatgtaaaatgcagaagaaatggatagattcctagatatatatgagttg----agctaaatcaagaagatataaaatttctaaataaaccaatatcagtcaatgaaattgaagatgtaattaaaaaaccTATCAAAAAATCAAAGCCCAGGCTCTGATAgatttcactgctgaattcta-caaaaatttgGAGAGGACCTAATACcacttct---taaactctttaatgaaactgaaagggaagcactattcccaaattcattcctggaagcaagaattaccctgataccaaaagcagacaaagacccaactgagaaaaaaatcctaCAGGCCAatt--------gaacataaatgcaaaattcctcaataataT-ATTGCAAACAGAATGTaacaattcatcaagaagattatttaTCATGACCAAATAGGACTCATCCCAGGGGtgca------------tatac--aaatcaataaatgtaatacaccatattaacagagccaaggacaaaaatcatatgataatCTCAATCAATGCAGAAAAAGTGTTTGACAACGTCTGACACCCATTCATGGTAAAacccctacagaaaatcagaatacatggtctttatctgaAACTGAT-AAAGCCATCTACTATACATCAACAGCCAACATcctaataaatggacaaaaactgaaagctttcactctaaaatca-ggacaagataaggatgtccactg--tcacttcTCATTCCGTAAGGTTCTGGAAACAGTGTGAGCAACTATATaagagagaagaataaaagaaataaatgtaaaaaaaggaagaagtggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccgataaaaattaaaaaaaaataaaaataaaaaaaggaagaagttaaattatcatgatttgTAGATGATATGATGCTCTACACAGAAGCAACTAAAAATTATACCAAAAGACTTCCAGATTTCATAATCAAGTTCAGCAGTGttactggatacaaagtcaacattcaaaaatcacttacatttaagtgtgtaagatagataatcatactactaagtttttgttggatcatgagCAGAATGGTTTTGCACTATCATTGTTTGACtgcccactttttatgctttgattttgtaacttgaacaactatttctaagatgacaatatgcaatgtatcaactagtgatttcttagtgttattattttttttgatattctgtattatttctacccttttctgtaTAGCCTTCAGGTACAagaataacaaactcacagagagagtaAGTATGAAA-------CTTTCACAATTATATCaagaagaatgaaatacttaggaaatcaatctaatgaaggacgAAAAGGGCCCCTATGTGGAAAACTATAGCCCTCTGAAAAAGaggattgaagaggatattagaaaatagaaaggtatcccttgctcttgggtaggaagaaccaatatagtgagaATGGCCATAATTCCAACATTGGTATACAGGTTTAATGCTATCCTGGACAAAATTCCAACAgtatatcttacagaattagagagaG-AATTTTCAGAATTATCAGTTCATTTGGatccaaaagagacctagaatagcaaaggcaattctgagcaacagaGATAAAA------CAGGGAGCATCACAAgccctcacttgaaattatactaaaaaccTAGTATGTTAAAAATAGCatagtaccacaaaataaaacaaaacataacaaaccaaacaaacaatattaaaaaaaaaaaaaaaaacagatctgaggaccAGTGGTATAGATTAGAAGCTGCAGAAGCAACTCCAAAC---------------ATACTTACCAAGGAAGGTATAAACACCT--TTGACAAAGGTGTTTATTGAAAGCCTATTcaataa--aatgctgaaaaaactggatttctacatgctgaagatttaAAATTAGACC-TACATCTCTTGTTG

a score=6674
s chr3           120940209 597 + 160039680 CCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAG-AACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAA----CTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAA---------CAGAAAAAAAC-------CAATACAAGAACG------GGAAC-AACGCCCTAGA-AAAAACAAG--AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAAT-GCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT
s HiC_scaffold_1 229214006 588 + 233722169 CCAAATATTTATAGTCAGAAAAAAGGTTTATCTTCAGCACATTCTTGGCAAAATCCTAGGAGT-CCAACAAAGGACAGGATCTTAAAAG-ATTTAGGGAATAGTAACAGCTCATTTATAAAGATAAACCTATTAGAATTACAGCACATTTCCAAAGAGAAACCATAATGGCCAGAAGGGCTTGCAGAGAAGTGTTTTAAaccctaagagaaaaaaaaattacaaatcacATTGATATTCTCTGCAAAGatatctttcaa-------------------------atttgatgaCAA---CAAACACATTAGACAATTTAggaccaaaccagcactccaaaacaTTCTGAAGGGTGTCTTAGAGAAGGACAGGCTTGCAATGCCAAAACGTTTAGTGAAATGAATGTGTCAGATAGGGGTCAGTTAAGGTGA--CTGCATGAAGC--AGAAGGAGCC--------GAACAGACTCAGCACCAGGTACCAGTGCAGTGACAGGGCTCAGTCAACACATTGCAGGACTAAGTCTCAAAATGAATGGTCCCAACTCCCCACTCACAAGACACGGATCAGTATACTCAACCAAAACCCAAAACTTAACAATGTGTTGAATGCAAGAACTACATTT

a score=86033
s chr3           120940221 3628 + 160039680 GACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAA-----AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTG----------GGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA--------TG-AAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGG-----ATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-------CATCTAAAAGCTCTAGAAAAAAAGG-------AAGC---AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGT--TCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatata-agtgaccctaaaaattccaacagagaactcctaaacctga-taaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataa---aaactgcatggtactggtata-gagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa-cagca----atggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtg
s HiC_scaffold_1 218598417 3569 + 233722169 gaccaaaaaaaaaa--------aaaaaaaaactcccagaAATTCAGA--------ATAACAACACATTATTAAAacctgtaagagaaaagaaacagaatacctacaaagaaaagtccaCGAAAATCACATAAGAATTCTCTACACAAATCCTCAAAtgaagaagagcttgaa-----gtactTCAAGTCTTGaatgaaaacaacttccaacccagattgatgtagcctacaaaactatctttgacaactgatggagaaatgaaacacatacatgacaaagaacaactaaagaaattcatgtctatcAAGTCAAACCTCCAAAGAGTAcggaaagatattctagacagatacaaaaatgaccacaattccaagaacaacatcaGAAAAAAACCACCCACAAAgcagagcaagcaattaaacagaggaaacAACAGGGAACCAACAGCAAAAAATAACGTGACAAAGATAACCCAAtacatatcacttataaccattaatgtaaatggcctgcattcaccaatcaaaagaaatatattgGCATAATGAACCCAGAAACAATATCTAGCAATAGGctgaatacaagaaacacatttaacttaaaaaagaaactcatagactgaaagtgaaaggacagaaaataataCTCTATGCAACAGATAGGTACCCTGAAGacagcaggggtagctattctatttgcagacaatgtaaacttcaaaccaagaaagatcaaaagagataatgaaTGTTATTATACACTTACTAGgtg-aaaattcaagagaaagagataaaaatcataaatatatatgtaccaaatatgggagaactaaactatgtaagacaaatgtcaacagacatgaaaaaaa-----------taagcaataacaatgaCTATAACAGGGGGACTTTAATACCACATTGTAAC-Aatagatagatcaattagacaaaaaaaaaaaaaaacagcaaagaagc-aacagaattgaaccaaacttgtaaataaatggacttagtaaactTTTAAAGAGTATttcaccataaaaaaaaaaatcttaattcacatgcttctcagttgcacatgggccattgtctaaaacagaccatatactaggccatagaacatgcttaggtaaatgcaaaggaattaaagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCA------GGAAAACAGCACATGC--ACAAATATACAACGTAATGTGCATCTGAA--CTTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaa-agaaagaaaagactcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaaga---aggta------taaaaagtTTGAAtaacattaatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaat-aaatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaa-aaagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaatacaattaacatatcttacagatctagaaaaaaacat-------tccctttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaaagtc----tttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtca-----aaatggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTCA-----ATAGGGGTAGACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttcaa-----agaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=32940
s chr3           120940264 2425 + 160039680 CAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATT-CACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAAC----CTAAAAGAAGAC--------AGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTA---------------CACAAACAAGACCCA------------------------------------------ACATTT----------------------------------------------TGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGG-ACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA--GCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAAAGGGCACA------GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT-----------------GAAGAAATCCAAAAC-----------ACCATCAGATCCTTC----------------------------------TACAAAAGGCTAT-----ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAA---AGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA----GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaag
s HiC_scaffold_1  77435158 2503 + 233722169 caaaaattcaaaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaat-taatgaaaaataaagacctCCCTTGATAAGTGTAAATTATAGACATT-TATGACCCCTAATCCAGCATTGCAGAAAATACTTAAGTTAATcttaaacacagataaaaaagagaataacaat-tatgagaccaaagaaagaaatgtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCA-AATagtagaa----------aaaaaacaaaatgataggaattagTACATACCTTCCACAACTATCA--TAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG---ACAG--------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAATATAC-ACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaaagaaaa------------------cacatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaa----aaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaa--------atattttaaaaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTGTTA----ATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=46061
s chr3           120940306 2639 + 160039680 AAAAAGGTCAAGTAAC---ATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGA------ACGGGAACAACGCCCTAGA-------AAAAACAAGAAG--------GTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAG---------AACAGA----ATGCCACCTTTAACAACTAA-AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGA-----TCTTCAATAACAAAAT---AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGC---CTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCAC-AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC----AAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCA---------------------------------------------------------AGAACACA--------------------------------------------------TTAAAGCAATCATCCATC------------------------------------------------------------------------------CTGACCAAGTA---------------------------------------------------------------------------------------------------------------------------------GGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacaccctt
s HiC_scaffold_1  66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatat-aaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT-------------GGAGAAAAATACTTA-ACATTATTCTTGACAGAAACAATGCATCAGATACAGCTAAAAACACAGAACAACTAGTGAAATCAGTGAATaaacatcaacaaagaaa--cataaggaaaagaaaaacaaaggatacaccaacataaaaagaaagcaatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagata--------------atCAAAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACAC--------AAGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAAT--AAACACTAACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagtt-cgAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAAA-----GAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaa-taaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaaga----aaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=49052
s chr3           120940355 3751 + 160039680 TTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA---------ACCAAATTCACGCATTATCTCTCCACGA-----------ATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCA-ATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTT---TTCCT----TAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTT----CCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACC--TTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAA-CACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCA---CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACT---CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTC--CCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGA--TGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG---------ATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA--TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAA-GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatata-aaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgt----atgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatg--------aacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa---cagcaatggcttgtgct------------gtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaag--aacaccaacagactgggaaaggatct-ttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtggga
s HiC_scaffold_1 228955059 3395 + 233722169 tttattttcaaaaattctgaCCAATACTAAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACA-ATCATCAAACTAGGACTACAAAACATATTCAATCCTACACAG-----CAAGAGGGAAAAACTATGAAAAAGGATAGACTCAATAAT-TAATCTAAATGGGAGAGTTGTttcacaagaga---gaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaatt--aaaatgataT-CTATGTAATAAGTGTGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATACTCCTC----------AAATAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT--ACC-CATATTGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGGGAAA--TTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAGG-TCAATGAAAAAAAG------TTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAGATGATAATAGGCCAT---GAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTTCCAAAAGCAatacaataaatcaataaa--------------tgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgt-aaagagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCC-ACAGAAGACTCTCAGAACTAATAGATAAATTCAGCCAAGTG---GAATATACaaattaatacacaaaaatcaagaacattacccaaagtgatatatatata---------------------------------cttaataa----aaataaattgaaatatc--------------------------aaagtttttttttcataacTAGAAAGTCAAGTCT-------------------AAAATTCCTAGAGA-----------------------------------------------------------ACCAAAAGAGACCCA-----------------------------------------------------GAGTAGC------CAAAGCTATCCTgagcaacaagaaaacaaaca-aacaacaac----------aacaaaaaaaca---ggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACATAGGGGAAA-CACAGGACCCATAGGCGCA-GGGAAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaag-------------aaAATAATGAGCCAACTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACT---CAACAGGTGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=81629
s chr3           120940412 4163 + 160039680 [encoded data, 4676 characters]
s HiC_scaffold_1 130105087 4470 + 233722169 [encoded data, 4676 characters]

a score=58293
s chr3           120940427 4052 + 160039680 [encoded data, 4684 characters]
s HiC_scaffold_1  33891657 4431 + 233722169 [encoded data, 4684 characters]

a score=42395
s chr3           120940438 2632 + 160039680 TACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCAC-GACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAAC--AAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAA---------TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGA-AAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA-AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTA------GTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAA------------ACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGC---CAACATTCACATGGAAACTGAACAACA----CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-------------------------------------------GACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCTTT---------GGGACACAAT---------------------------------------------------------GAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCA-AATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATC-CTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTA---ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccc-taaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagc--cacaaataat--ataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctga----agaaagaaattaaagaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAAATTTTGAAGACCACTAAGTGAGCACTACAAAAGT-----ACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAACATCAAAGAGACTAAAGGAATGAATACATTAATCA--TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCATCAATAACAGGTACAT------TGAAAATTagatgatggaaaacaatacttcatgcaa-tgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAATACTGCTGCACATAGAGGTCAGA---TAAACAGC----CACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCA-----------ACTGGACAAAACTAT-CAGCAAAGAATATGAGAGTTGAACTATACCTCTGAACAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaacca-tGGCAAAG-GAATCACAGAATTTTCTCAAC-----CATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatggataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca-gaaatatagca---------------ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAGT------------GGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACC-TTACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=48772
s chr3           120940624 3213 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCA---AGAGGAACTCTCAATTCTGAATATC---TATGCT-----CCAAATACAAGA----GCAGCCACATTCAC-TAAAGAAACTTTAGTAAAGCTCAAAGCACACAT-TGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGAC-----AGATCATGGAAACAGAA--ACTAAACAGGGACACACTGAAACTAACAGA-----AGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA---AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACC--AGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTA----TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaa--catagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttac--ctatcctaaatcagataggggactaatatccaacatatataaagaa
s HiC_scaffold_1 216972207 2954 + 233722169 AAAGGAACCAGCAACAGGAACATAATGAAG------ACAATTTCAGAAATAGGTTG--ACATCTAC----CAGTAATATCTCTC----TAAATGGTGCAAAATCCCTAATCAAATGA----GATTGCTgttgtggctgaaaagataaagcTGTGTGGTATGCTCTAAACAAAAGACACAATTAATCCAAAAATACATTCATGCACTagaaatagaagaatgaaaaacaatattctatgcaacTAAAGCCTAAAAACAAGCAGGAATAGTTATCTTATTTTCACA-AAAAGTGCATTTAaactaaaactgatcagaagagggaaagaaaaacataGC-TTATTGGTTATGGCAAAATTCaacatatatatgttatatatgttttatatattatatatgttgtaTACCATATAtgatattttgcatatatatatatatatatatatatatatatatacacacacacacatataccccTCAGTcacacataa-----------aacaaat-------attactggACCTGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAa-tattagttatttatttattgaacaaGTGGAgctaatagatatctacagagtgttccattcaacaacaaca--acactcaTTCTTCTCAGTAGCCCAAAAAACTTTCTCCACAATAGACCATATATCACCCCACAAAGCATGGTT-AATAAATACAAGTATCTGCAGCTTAA------------ATCAGATTATAacgcaatgaaactagaaatcaagcAAAAAATCAGAGATATTATTCAAACAT----GAGgacatgaaataatacatttt--aataatcaGTCagccacagaagaaatcaagaaagaagttAGAAAGCTCCTGCAATCAAATGACAATACTGATATGGCGTAACATATCCTGTGG-ACACAGTGAAAAAAGCCGTAAGAGTGACTCTTACAGTTATGAATA--TTCATGTAGGAAAAAATAGAGCAATCCCAGACAAATAACCCAACGA----------GGTCCCAGATAAACAAGAA--CAATTCA------------AAGCTTctataagaaatgaaattaaaaggatgagATTGG--AAGTTATGATATTGAGaatga---aaaaatacaacaaattgaagatctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTTACCAGA---------------------------AAAAGTTGAAATTAAA--------------------TCTATCAAAGTCCTCAAGATCATTAACAACCTCTTTGAAAGTAAGTGCTGCATTAAATTGGAGAATCCAGATGAAATAGATAGATTtctagatatatatatacattgccAAAACgaaaccaagaaaatataaaagctgTGAATAATTCAATAACAGGCAataaaattgaagcagtaatgAAAACTT----------------------ACCTGATAGATTCATTGTTTAATCCTACAAGAACTTCAAGATGAATTTAACgccaatactttttaaattttttaatgaaaccaAAGAGGA--GTACTCT--TCAAATCATTTCTAGAAGATAGCACCACTTACCCTGATTCTAAAACCATTCTAACACCCAAGTAGGAAAGAAAACTACAGAGCAATCCTTTTAATGAACATGAATGCAAAAACTTCCAACAAGATTCTGGataaacaaat---------catcaaaaacattGTTTATCATAACCAAAATGGCTTTAGTCTAGTGATGTAATGGTGg-ccaacatatgcaaatcaataaatttaatagacaacg-aaacagaagcaaggacaaataTCATATGATCATCACAACAGA-----GAAAAATCTTTGAGAAG---TGAAACACATTCATAACAAAAACCCTG--AAGATCta---------------atctcaatctgataagagcCAATTCTGGTAAACCTTctgccaatatcatactaaaaggGGGAATGCTGAAAGAATTCCCTCTAAAATTGcaaagaagacaaggatgtccg----------aCAGTTTCTATTCAGTGTACTCAAAACATGAGCTAGAACAAT----CAAGagaagaagataaaaaagaaatgtgtgggaaagaaagaagtc---atgttactatttgcagatgactcgATCCTTTATCTGAAAGACTCCAAAAATTCCACT--AAGATTTTTAGAACTGATAATCATATTCAGCAGTACAGTAGGACACAAAGTTAACATACGAtaatcagtagcatttctgtgCACCAATAACATactcacagagaaggaa-------aaataataccattcacaacAGC----ACTGAGAAAAA----------GTAATACTTACAAATTA--------ACCTATCTAAAGAAAACTAC-AGCTTctgaa-aaagagattgaaaagaaTACCAGA-------------TCACTTTTTCCTAAATAAGCAGAACCTATATTGTTGAAAATAATCACACTTTCAAAActcatatataaatttaatttattcccAATAAAAATGGGagcagcattcctcacagaactagaaaaa--aatcctaaaattcatttggaaccagaagagatccagcatatcaaaagaaatcctGGTCAACAGAAGGAAATCAAAAGCCATCA-CACTCcagatttcattttatattgcaaagctacagtgataaaaacagtattctGTTGGCATAAAG-CAGGTATGTAGGTCAGTGAAACAGAG-AGAGGCCGCAGAAATGCCCCGAGGCACAttcagccatctgatctttgacaaagggaccaaaaaatTACACTGAAGAAAAGATAACCACTC--ACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGA--------------CTATCCCTCACCatgcagtaaaataaa----aagtagattaaatatctaaatattaaaacagaaatctgTAGTCCATTAGGAGATGAACTAGGTAAAA--CTCAAAGATACAGGACTAAGTAAGGATTTTCTGAGCAGAACCCAAgttacacaagaaataacattaagaatcaataaatgaggtTACATCAAATTC--AAAGCTCTTCACAGTAAGGAaaaccaccagcagagtgaagagtcaatgtacagaatgggaaaaattttatcCAGCTACTCC---CCAGACAGAGAACTATTGTTCACAATATGTAATGAA

a score=10617
s chr3           120940659 1149 + 160039680 AACAACTAAAATAACAGGAAGCAACAATTACTTTTCCT-----TAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA---GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACA--AGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATT-GCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTA-AACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCA---AAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAA--CAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAAT---AAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-----------AGAAAAAACGGGAGAGAGC-------ACATACTAGCAGCTTGA-----------CAACACATCTAAAAG-----CTCTAGAAA----AAAAGGAAG-CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC--GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT
s HiC_scaffold_1  20106840 1122 + 233722169 AACAATTAACAAAAT-GACAACAGTAAATTCTTTATCTATCAACAATTGCTTTAAATATCAGCATATTTAATTCTttaatcaaaaggaaaagagtggctaaatggata---aaaaagtatcCACACAAATACCACCTGCAAGAAATTCGTGTCATCTATAAAACATGTAGAC-TTACC---AGATGAAG-------------TATTTCATGCAaata--aagcaaaaggaaacagGGGAAGCT-TATTAGCTTCAGATAAAATGCACTTCCAAGC-AAAATGAT-AcaagaaactaagaaaatcaTTATAGAATGACTATAGAGACAATTCATCAAGAGGA-TGGAAAACTGTAAATATATAGGTACCCAACATTGTAGAATATGAACATGTA-------AATATTACTAGATCTGAAGAAAAGTAATAGCA----ATACAGTAACAGTAGGAGACTTCAATAGTCCACTTTTACCAATGGATAAATCATCTTTACAAAAAACACAATAAGGTAATTTTGGACGTGACCTAAAGTTTAGACCAAATGGGcctaatagacatatacaggatatTTCACCTAACAAAAGTaacatacacattcttttcaaattCCCATAAGTCTAACTCCAGTTAGATTG------TGTTCAACTACAAACCA---------AAATC----AAGATTTAAGTCATATGAAACATGTTTTCCAATCACAGTGAGATGTAACTAGGAATAAATAACAGGGGAAAAAAACTGGGAAAATCACGAATATCTGAAAAT----CAACACAATCCTGAAAAATCAATGTgtcaaagaacaaattaaaaggaaagaaa--aaaatcttgtcaCA----AGTGTAAATGGAAACACATCATGCGAATAC---TGGAATGCAGGAAAAGCATTTCTGAGAGAG---TTTATGGCAATAAAAATCTACACAGAAAAggccaggaaagaaagaagaaagcaaggtgaaaagaaaagaagaaggaagagaagatttCAAACTATCTAATATTATACCTTCAGGAAGTAGAAAAGGAAGTCAAGCTAAcaccaaagggg---------ggaaaaaaaggatgtTAGAGCAGATATAATTGAAACAGAACtcagaaa----atcaaatgaaatcaacAAACCTAAGCAGTGGAGATTctgaatagataaacaaaatttaaaagtc--taaTTAGACT

a score=35219
s chr3           120940689 2522 + 160039680 CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACA----AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCAT-TCTCATCAAAGGTAAAA--TCCTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCAT--------------------GGAAACAGA----------------------------AACTAA--------------------------------------------------------------------ACAGGGACACAC---------------------------TGAAACTAACAGAAGTGATGAAACA--------------------------AATGGATCT-GACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC--CACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagta---gctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattca
s HiC_scaffold_1  42973449 2236 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTT--ATTA---AATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagaca-GAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTA---TACAACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaaca------aaaccaaactaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgg----------------------------ggagaatcatca----------------caagtttgaggtcatctt------------------------------------------------------------------------------gGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAGAC--TTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTAAA-AATAC------TCcaggaatcaacctaatgaa-caggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaa-aatcaatactaaaacTCA

a score=81492
s chr3           120940703 3779 + 160039680 CTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAA--AATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTA-----AAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCAC--------------CTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTC---TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaata----gccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacaga-ttcaatgcaatccccattaaaattccaactcaattcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaac-----ccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatc--gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactg-ggaaaggatct--ttacctatcctaaatcagataggggactaatatccaacatatataaagaactc-aagaaggtggacctcagaaa----------atcaaataac---ccccttaaa-aaatggg----gctcagaa----------ctgaacaaagaattctcacct------------------------------gaggaataccg--------------------------------------------------------------------------------------aatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagcc---ccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgata
s HiC_scaffold_1  75496062 3772 + 233722169 ctctcaatgtgaatggtccTAATTCCCCaatgaaaagacacagattggcagagtagatcaagaaacaaaactcaaCAATGTGCTATATTCAAGAAGCACAATCcaaaaagaaatgtacagatta----AAGCTAAAAGGATGAAGAACAGtgttccatgtaacaggaacccagaaaaaggtaGAAGTAGCTGTCTGAATTTTAGACAAAATGGACTTCAAGACAAAACTGATCCAAAGAAGCACAGAAAA-----------TCATTATAAGGAagcaattcaacaggaagagctAACAGT-ATAGATATACATGCATTGAACACTGACTTGTCCAACTTTATTAAACATACTAtgggacataaaagatcaga---taaacagcG----ACACAATTATAGTGGGAGACCTCAATA-----------------gtcagatcaattagacaaaaaaatcaacaatgagatATCAAAGATGAACCAAATCttcaaacaaatgaatttaaCAGTTATctacagagtgctccatcc---aacaGCAGGATACATGTTCTCAAAATCATGTGAGATGGAAAGTCACatgagactttctccaaaattGACCACATCCT-GGCTTTAAATCATGCCtaagtatatggaaaaataatctaaattttaCCATTCATATTACCaaatcacagtgcaatgaaagtAGAAGTcaagagcaaaagaaaccacagaaa------------------attaaACCATATCCTCTTGAATAATTGAtggttcacagaagaaat---taaaaatattagaaagtttttagaaataaacaataataccaTTACAGCATACCAGAACATATGTGTCACAACGAAAGCAGTCCT--GAAGTAAGTGGATAGCtctgaatgcccacatcagaaaaacagagcaagttcaAATACATAACCTAGTGTTACACTCCAAGGTCACAGAAAAACA--ACATCAATCCAAATCCAAAGTTAGTAcaaggaataaaattataaatatcagaacagaaatcagtgacattgaaactttgaaaatta--caaacaatcaacaaatcaaagagctggttctttgaaaaaataaaca-----gacaaattcCTACTCAATCATatcaaaataaagagagaaaagatcCAAACCAATCCAGTCAGatacaaaaaaaggcaaaatcacagcagacattgctgaaatccagaagataatTAGCAATTATTTTGAGGatctgtattttaataaattggAGAACTCAGAAGAAGT------ATGTCCCTTACATGCATGTGAATGACCAAAACTGGaccaaga--aaatttaaataccCTAAAATCCAATAACggacaatgaaattgaagaaatgaaaaa----ctaccaactaagaaaactTCAAGTCCCAGTGAGTTGactgctgaattctgtaagaacttTGGGGAGGATCTAATGCCAAAATTCTTTAAATCCTTcagtgaaatttaaagggaagggATACTCCCAAAGTGACTCCTAGAAGACATCATTATCCTTTTTCTAAAACCAAGAAAGGACTCAACTAATAAAGAGAAGCACAGACCAATCTCTTCAAAGAACATCAATACAAAAGTTCTCAATAAGATACAGGCAAACaagatgcatcaaatcatcaaaaacATCATATATCAAGTATAAGTAGGatccatcccaggaatgcagagatggttcaatat--------------atgtaataca--acacaaacagaagcaaggataaaaaacacattatcatctcaattGATGAATAAAAGCTTTTT--CAAAAT-TAACATTCACTCATGACAAAAA-CCTGGAAAAAT--AGTAATAAAGGATCTtatatcaatctgataaaagccatttatgacaaaccc-tGGCCAAC--CATGTTATACAGAGGAAAATTG--------tcctttaaaatcagaaagaagacaaggatgcCTACCATCACCATTCTCATTCAACACAGTTCTTGAAATATTATCCAGAGAAATCTAGcaagagaaacaatgaaaagaGATCTCTATAAGAGA----GAAGTCAAATTAATATTATTT-CAGATGATGTGGTCCTCTACATAGAATCACCAAAGAATTTCACTGAAAACCATATAGCATTAATTACCAAATTCTGTAGAGTAtcagaatacaaagtgaac----aaaattcaa---cattcctatacacaaataataaactcatcaAAAgag-aactaagaaaataataccattcacaatacaattcattaagaaaaattaaacatttaggaATTGACCTAATGAAGAAAGTGGGACACCTGTACAagaaaaactacagtattctcaa-aaggagatcaaagaagacatcataaaatggaaagacaacccttCTTCCTGAATATTCAGGAT--------TCAAAATGATCATTTTTCCAACACTCATACACAGGTTTTaacacaatctcaatcaaaatgccaacagcaCTCCTCattaaaccagaaaaaaatactactaaaattcatttagaagcagaagagactcagaatagcaaaagcaatcctatgCAATGAGAATAAAGTGGGAGGCATCACATTCctggacttcaagttatactgcaaagccatattgataaaaacagcatggtactgaccaaaaactgaatatttgaatcaatagaacagaataggGGATGCAGAAACAATTATAGGCAACTCACCTAT------CTGATAtctgacaaagaagccaaaagcATACACAGATGGAAACATAATCTCTTTATCAAATGGTGCT-GCTTAGCCACacatt-----------------gaatctagacccatgtctctcatcatgtagtaaactaaaatcaaaacagttcAAAGTTCTAAaggttaaaatagaaataat----ctgctggaagataaaagagGTAAAACCCTTGAACACA--GGTGCAAGCcaggactttctgaatagaaaaaaa-------------taattccaagaatcaacaaataggatcatataaaattaaaaagtttctgcatagaAAATTAagtaaccaacagagtgaaaagataacctttggaatgaggaaaatattctgttaaatatttt---tcagacaaaagactgatatcaagaatacataaagaactctaaACAATTAGATCTCCACAATTGAAGACTGATCAAAAAACAGGCAGCTGAAATGAATGGGCACTGCTCAGAAGAAGCATAATCTGGATACAGGGTGCACATATTTAATCCCAGccctttggagactgaggcaggaggatcactgtgaactTGAGACCAGCCAGGCCACATAGTGAATTCTAAATCTGAATTATATAGGGAAATTacctaaaaatgattttttaaaagtaaaatggccaataaatacatgaaaaaaatgtttaatatccctgattattagagaaatgcaaattaaaacaacactgagattttacttTACCCTAAATAGAATGGATATCATGAAGAAATCAgataatagcaaatgctggtaAAGCCATT----AGGAGGAATATTTCTACATcattgatgggaatgtaaattagtacaaccattatggaatcCAGtacaaaaattcttcaaaaaattaaaactagaaattccgtttgacccaactattttccttctaagtattttcccaaaagagtcaAAGTCATCATAGTACAGTGATACACAGATATCCATGATTATAGCAACA----taataacagctaaatcttggaggcagcctgtatatccatcaacagCTGAATAGAT--aacaaatacagtatttatacacaatgatgTAGTACTGTGTCATAACAAAGAATAAa--caagtcatttgtagaaaaatggatacacctgGAGACTATAAtgctaaacaaaataaaccagacatacaagtttaaatatcacatgttctctcttata

a score=26606
s chr3           120940711 1820 + 160039680 ATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATC----TCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAAT--TTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA----------CACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAG---------------ATTCAAAAATATTGAAATTGTCCCAT--GTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGA--------AACTGAACAACACTCTTCTCAATGATACCTTGGTCAA----GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA--------CAT-CTAAAAGCTCTAG---------------------------------------------------AAAAAAAGGAAGCA----------------------AATTCAC----CCAAGAGGAGTAGACGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG--TCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGG
s HiC_scaffold_1  89719555 2099 + 233722169 ataAATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTA----AAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaa----atattgggcataaatattaaaaatacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTCTCAAG----CAGATCAACTAGCcaaaaattaaccaa--aaatatTATAGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaaatagacAAAGACTCAGACGTTTGTTAAGTATCCAAAACACCT---aatgaatcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAATAAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=75074
s chr3           120940732 3720 + 160039680 ATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCT--AAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTA-----ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG----ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTA--ATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta---actcaaacaag---tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatg---------gaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat------gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaagg--tggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattct-cacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaa--cacaatcacaa
s HiC_scaffold_1 110855274 3525 + 233722169 ataCTAAAAACTAGACTGGAAGATTGGAT-CAAAAACAGAACCCAAGAGTCTTCTGCATTAAAGAAAC--ATATAATCAAAAAAGACATTCATAGATTAAAcattaaaggatagaaaacaacttTTCATGTAGCATGGCACTTA-AAACAAGCAGGGTTAACAATTTTAATATCAGACATTATAAACT-CAAGCTAAAATTGactagaagagacaaagaaggtccaAACATACTAGTGAAGAGAACAATCCCGCAAGAAGAGTCAACATTGATAAacacatatgcaccaaatgcTAGAACATCTATTTTCATAAAGCAAaaactactgaaattaaaaagtaaaataaacactaGCACAATCATACTAGAGACTTTTAATGTCACACTTGTATGAAGagtcaaataaattaaatataaaacaaacaaataaatgtcaGTTATACCACAACT--TTGAACACATGGATTTAATTCATAAATACAGAGTATCAGACCCTGTAAAACAAAA---TATGCATTAGTTTCAGCAACATatggtacattttataaaatagatcacatactagcccacaaaaccttcttaaataaatataaaaagaatttaaattactcCTCTAATGCTATCAGA---ctgtgaaaagaaaatagaaatcagtgacagaaaaaatttcagaaatgcaaaatttCC-TAGAAAGTTAACAAAATACTACTCTTCATCCAattggtcacagaagaaat-----------ttcaaaaattctgaAAGTT-AGTGAAAATGACTGTAAAATTCAATGAAACATCTGGGACActattaaatcaattctaagataaaatattattgtaatCAATGTTTATATTGGAAAAATAGAGCAAGCCAAAGTAAACAACTTTATTAGAAATCTTAAGATACTTGAAAAATAACAatccagt--acaaaacaaaattaa--ggaatgaaatTATAGAgattagagtagaaatcaataaacttgagacaaaaataactgt-aaaaacattaaaaaatcaaagagcttgttctttgaaagaatacatgaaatagataaGCCTTTAGCTAGACTCACCAa--gactaagagaaaaaaaaatacttatattAAGAGAat----------aaaggtgaaatcacaacagttTT----GCAATCCAAAAGAtcgtaactactttg---aaaaatttataatccaaaaaaataccaaattttgAAGAA------------CTGGTCACATATAAACTTCCAAAACTAAAAAAGATGTCATAAATTTGATTGATAAACTAGAAATAAGT-----ATGGAAATTGACTAAGCAGTAAAAAGTATACCAACTAAATATAGCCCAGGACTTGATTGATTTATGACTGAATTCTA-CAGTTTTTTAGA----ATGTTACATCAATACTCTTcaagattttcaaagaaaataaaggaattggAGTACATCTAAATGCAATTGTGGAAACC---------CTGCTACCAAAACTGGATAAAAACCCAACTAGGAATGGAAACTGTAGGACTGTCTTCTTACTGAACACAGATGAACAAATCTGCAATAAGATATTAGCAAATTAAA---ATGAGCACATTATCAAAAAGATGATACATTATGATCAAGTAGGTTTTATTCCAgagatgcaagaatggttcaataTATATATAAGTGCACAAATGCAATATATAACATAAG-AAGGAGAAAGGTCAGGACCATATAATCATATCA--AGATACAGAGAAATCTTTAAACAATACTCAATGTCTCTTCATAAACAAAACCCTGAAGTAAATTGGTATAGAAAAACCATACCTGAGTGTGATAGA--CTATTTATAAAAAACCAATAGACAGTATTGTACTAAATaagaaaaagctgaaaacatTCCTCTTAAGTTCaggaagaaataaatgatatTCACTATCAAT---TCTTGTTAACAACTTActtgaaatattatttgaaacaacgaagcaaaacaaagaaat-aaagggatacatataggaaaagaGGAACTCAAACTATGATTATTTGtagatattaaaatattgtgCAGACAATACCCAAAGAAATCC-ACAAAATACTATTTGAATTAAGACA-AACTTTAGCAAAGTAGCAGGATTTaagataaaacacaaaaacaaagattCGTTAGCATTTGTGTATACC---AACGagtgggaagagaataaaattatgacAAAAATACCATTCAtagtagcttcaagaaaaatgaaatatctcaGAATTAACCCAATAAAAGGGATGAAAGA-CTTTACAAAGAAACCCATAGTACTGTGAAGGAGGCTCTTGAAatggacatcagaaaatgaaaaaaaaaaaaaaatcccct---cttCTGGATAGATAGAACCAgtattgtcaaaatgaccataattctAAAACTGTTATATGCATTCAATATactcctaatcaaaataccaacagaatAATTTacagatctaaaaaaaa-aacactaaaattcatatagagcTATAAGAGActgagaataacaaaagcaattttgggTAGTAAGAAAAAGGCAGAAGGCATAGTAATATCTGACTTTAAAC--TACTTCA-AGTaa-ggtgataaaaacagcatgacattaaaacaaaaacagatatatGTCTCAATGAAACAGAGGTGAGGATACAGAAACCTTTCCAAACATATTCAACTACTTGATCTTTAAAAAAGTGGCCATAAACACAAGTTGGAACTAAGACAGTTTTCTCAACAAGTGGTGTTAGTGTAACTGGTTATTGGTTTGCAGAGGATTGAAAATGGACCTTTGTCTCTCAccatacattaaattaaaatctaaatgcatcaaagttctaaacattaaaacagaaaagttaaacctactagaagataaaataggcaaatCACATGAAGACATACATGAAGGTGTAGGAAAGGATTTTACAAACAGAATATCAACTGTACAAGAAAGAGCAGCAAGAATTAACAATTGAGATTACATCATGTTAAAAAGCTTTGGTATAGTAGAAGA----GTcagtagagtgaagagaaaacctataAAGTGGGAAAAA---TTTACCAATTATTCCTCAgagagaggactaatatctaggatATGCaac-aactcaaaaatatttaaaccaCCTAAAG-------------TTAAGAAATGGGcccccaaaatgaagaaaatattttacagaggaagaaatacaaatggtaatcaaatatatgaaaaaaattttcaacatctctggccattagagaaaagcaaattaaggCAACAATAATATTCTATCTTTCTCCA------------AACattaagaaataaagcaatatcaaATGTTGGTGAAGct----------------------------ctggtgggaatgcaaactgaaacaatcattgtggaaatccgtatagagatttctcaaagaaattaaattagaaat------------------------------------------------------------------tatatgtatcaatattttaatggcaaa---atttgtaatagctaaatcctgggagcagcctgcatacagATTAACAG-gtagtggataaagaaaacatggtatctATATATAACAGAACACTACTTAGCAATAAAAGTGAGAGACCTGA-GACATT-TGAGGAGAAAGAATGTACCTGCAAAATACAgtgctgagtgaaataaaccagactcacaa

a score=57053
s chr3           120940749 2356 + 160039680 AACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCC-----AAAGTCATCAAAAAAGACAAGGAGGGACACTTCAT--TCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCT-ATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACA---AAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAAT---CAGGA---------TCAAGTTGACCTTC-------TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAG-ATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGG-ATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCA----TTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaag---------tcaaaatatcactttttgcagatgatatgat-agtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaatt-agggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctg-tatgat-aaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacatt
s HiC_scaffold_1 127990987 2277 + 233722169 AGCACACAGAATGTATATATAGGATTCAACAAAAtgatatatacaagaaacacatctcacTCTCAGGGATATATATAGAGACTG----AAATTTAAAGGGTGGGAAATGATATTTTAAGTACAAGGAATCATAAAGCAAGCAGGAATAGTCATAATTATATCTCATAAAATAGACTTTAAGACAAgatgaaaataattagaaaagatggaaaaagtcACTGTATAATCTC----AAGGAACAATACATTAAGAGTATATACCAATTACCAGTATATAATAGACCAAATGTCAGAGCATCCA-ATTTTATACACAAATGCTACTAGATATAGAG----AGATAGGCcccaatacaattataatgggtgACTTCAACACCCTACTCTCACCAATTGATAGATCATCAACACAAAACTCAATCA--AAAAGTCTGAGTTAAATTATAAT-ATAGATCAACTGgatttaatagatatatacagagtatt---ccataaAACAgctgcagaatacacattcttttgaTCAACACATGAAAGCTTtcctaaaatagatcatatgttAGGAAAGGAACAAAG-ATTAGTGGattcaaaaatg--gaaataatttcttgtatcttatttgatcataatggaattaaactagaaatcaacagtaAGAGAAACTCCAGAAAttatacaaacacatgg-aattGAACAACATATTATTGAATGAACAGTGGGTCAAAAAAGAAGTCAGaagggaaatttaaaagtttattaaattggatgaaaatggaaacacaatgTAGTAAGATCTGTGCTACAGAGAAAAGGAAGTACTAAGAGGG-AGTTCATAGCAATGAGTGCCAGCATGGAAAA----TAGAGATCACA----AATAACTTAATGATATATCTTAaggtcttagaaaaacaag-agcaaactAAGCTCCAAATcgtatagaaagaaagaaacagtataGATCAGGGTACAAATAAATCAACTAGAAACTAAAAGAACAATACAAACAGTCAATAAA---------CAGTTCTTCGCAAAGAtaagtaaaattgacaaacctaTAGTTAAACT-----aatgaaacagtgaaaacacccaaataaataaaactagaggtgatattggagacattacagtgGATATCACTGACAATCAAGGGATTATTAAGGACAATT-TGAAATACAATATGCcactaaatttgaaaaacaaggGGAAAACTGCATATTTTTAGATGCATATGACCTAAGAAAACTGAACTGACAAGATATAAAATCTTAAGTAGATCTTTGCCCACACTAACAGTAATAAG-----CAATGAAATTATAGTAA-TAACAAAAGCcttccaa-caaagaaaacccaggactggatgaattcactgctgagttTTACTGGTCTTTAAAAGAA---------CTAATGCTACTTGAACTATTCCATAATgtagaaaggaaaagaactcTTTCAAACTTATTCTACAGATCCAGTATTACCCTGCTATCAACATC-TAGCAAGacacaacaaagaaaagagaattagAGAGCAatatccttaatgaacatagatataaaaatcttcCACAAATCACTTGCAAATTGAATTCAATgacacataaaa-----tatatactatg-tCAAACTGGTTTTACTGAAGGGAATGCAAGGataattcaacatatgcaaatcaataaaggta---CAGCACATAAATAGAGCCAAGGAtttaaatcacatgatcatcgcaataagtgcaaaaaaaaaaaaactttgacaaaattcaacattccT------------TTTTGAATAAATAAGGTATGGAAGGATCatacctcaaaataataaaagttctaAATGACAAACTCACAGCCAATAC---AGTCAATGTACAAAAACGGAAAGCATTCCTTCAAAGTTCAG------AACAAGGCTGACTACTTTCACCACTCTGATGCAGTGTAGCACTAGACATTCAAatcagagcaatcaggcaagagaaagaaataaaaggtacacATGTAGGA-------AAGTTTTTTTTATCAAACTATTTATGTTTGTAGATGATATGATGGGTACACATATGAAATGCTAAAACCTTCACCAGAAGACTTTTAGAACTGATACATGgattcagcaaagtagcaggatataaaatccaCATATGGAAACCGATAACTtttctgtacaccaataatgagcTCTCTGAGAAGGAAATTCAGGAGACCAATCCGATTCACAACAGCCA-------------------------------AACTGAGGATATGAAAGAGCTTCCACAATGAAAAACTGTAa--catcaaagaaagaaattgaagaagcaCT-AGAAGTTAGAAAGATCTCTCAGGGTAAtggactgggaaaaaaaaaatt

a score=15642
s chr3           120940811 923 + 160039680 AAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTC--CAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT---TGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGA-AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAAGAAGAACT
s HiC_scaffold_1  87165018 864 + 233722169 aaaaaaat---cactgagtaaaaatcagagacagaaacaaaatt------aCATATGATGGGAACATGGCAAGAAGCCAAAGTTGCTATGCTAATTTTACATAAATTGGATTTCAAGACCAAACT----AGAAGAGGCAAAAAAGGTCACTACCTATTGGTTAAGAGAACAGTTCAACtagaagagataataattat-----tCAGTGTTCACTAAACACTAGAAAGCCCAACTTCATAAAA------CTACTGGATATAAAAGGTCATATAAATGC-----AAACACTTAAAATGGGAGACC--------CTACTGTCATAAAT----AGatca-----aaagaaat--atcagagttgaactaAACCT-----------TTGAATAAATAGGCTTAATAGGTATCTATAGAGTGTTTCACCAAAAAGCAACAGAATGCATATTCTTCTCAAGAGTACATAGGACTATCTCCAAAATAGGCCAAGTGCTAGCCCATAACATTCAcataacaaaatgcaaaattattgaaattattccatg-----tatgagatcatagtgcaatgaaactagaaaacaaTGGGGGA--AAACACCAGAAATTATCCAAGCATATGAAAATTAAGCAATGACttcttgaataatcaataggttgtagaagaaatcaa-agagaaattaGAG--TTCTTGGAATTAAGTAATAGTGCCAGTACAACATATTGTAACCTGTGGGCCACAATTAAAATAGTGTTTAGGGGGAAGTTTATAACTATGCAcatccacatcagaaaaacagtgaGTCCAAATA--AACAGTGTAATGATGTATCTCAggatcatagaaaaaaaaaagaacaaccaaATCTAAAGCTAATACAcataaggaaattataaagatcaggacAAAAACTAATcaagactaaaaacaaaacaaatt

a score=6797
s chr3           120940842 327 + 160039680 CTGGAAAACAATTTTCCAAGCAAATGGTAT-------GAAG---AAACAAGCAGGAGT--AGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAA
s HiC_scaffold_1  63812792 323 + 233722169 CTGGAAAGTGAT------AGAAAATGATATTTCTTTGGAAACCAAAGAAAGCAGGTGTGTAGCTATACTCATATTACACAAAGTAGATTTTAACTCAAAAATAGtaaaaggagataaagaaagtcattatataatgatagaggggaaaatccatcaagagaaaa----aatactatatatat------ccAACATCTGAGCAACTAAATCCATAAAATAATCGCTAAAATATCTGAAGGGAGA-GTTAAACTACAATGCAATAATAGTAGGGGACCTTAAGGACCCACTTTTGATAATGGACAGATCATCTAGACATAAAATCAATAAGGAAAAATTGGA

a score=41028
s chr3           120940876 2243 + 160039680 AAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGA-CAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTAC-----------------AGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAG-----------AAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG-------CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG---ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCT-CCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAA-------GCAATCTACAGCAAACCAG-----------TAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtat--atataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggat--ataaaattaactcaaacaagtcaatggcct-------------ttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagc---------------cacaaataatataaa-----------------atatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatct-cagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctat
s HiC_scaffold_1 144250098 2217 + 233722169 AAGCTAGCTAGTTTAGCAATTTTATTCTCAGACAAAATAAACTTCAAGCTGAAACTGATCAAAAAagtcaaagaaggtcactacat-------------aaaaGTTTACAGAACAATCCAATACTTGAAAATGTATACGCACTAAATCCCGAGGCACTTGacatcataaaacaaatactaccgaacataaaagatcagatataCATCAACAAAATCACAGTGGATGACCTCGATACCCCACTTGCACAATGAGATCAACTcaaccaaaaatcaacaaaaaaaggTCACA--------------------GGAACAAACAGACTTAATAGATATCAATTGTAGTAGTACTGTAATAGAGTGTTCTACTCTACTGCAGCAGAACATGCACTCTTCTCAGCAC---acaggactttctccaaaatagaccacaga---GGTAATTTAT---------ATAAGTGTAAAAGACTTTAAATCATTCCATCTATACTATCAGATCTTTAAGcattgaaactaaaaacaaatcgTCAAAGAGACcatgagaagtttagaaactCCTGGAAATTTAACAACACATCCTTGAATAcccaatgagtcacagaagaaatcaaggaaaacaaTGGACAATTCT-AGAATCAAAGCACAATGCCAGTAAAACACATCAGAACA---AGTTAACAAAGAAAGTggtcctaaaagaaaaacatatttcagTTAACTACATCTAATGTGTAGTCACATTAaac---agtgagctcaaataaacaactttgtGATGACCCTCAAGATATTCAAAAAACAACAATTTAAGctcaaatttaatttaaagagagaaatcacaagga-----------cagaatagaaattaatgtaacgaagaccaaaaaaatta--caaagaatcaatgaatca--gagccggttctttgaaaagatatatATAAAAGACCCAGCCTTAGTTAAAcctaccaaagaa-agaaagaaaggacttaTATCAAtgcagttagaaatgaaaaaaaggtgTAAATTAAAAGAGACACAATCAAAATCCGAAGA-----TAGTAACTGCTATGAAAAGTTATACTCCAATGAGTATACAAATCCTGAAGAAACAGACAAGTTCCT------ATAATCATTACCAAAATTAaaccaagaaaacataaaaatttcaaacCATCAAATAAC-----AAGCAATAAAATTGATGCTGAAAAATATGCCCTACTAAGAAAAACTTAGTATCTGATAAATCCACCATTGAAATCTACAAGAACTTTCAGGAGATTATAACACACATCCTTCtcaaaatcttcagtgaaattgaaagagaagtaatGTTTCCAAACTCATTTCTGTGCATGAGCGTGACTCTtat-tcaaaaccagacaaggatccaaGGAAAATGA-------CTGACCAATTTCCTTAATGAGTACAGATTCAAAAAGTCCTGAATGAAATATTGGTAAATAGAATGTAACAAATCATGAAACAGATCGTACATCGTGACTGAGTAGGTTTCATCCAGAGATTGTAGGAATGCTTTAGCACCCATAACTCAAAAAACATAGTATGTCACATAAAAAG---TATGAACAAAA--------GTCATATCAATAGACTCATAAAATACTTTTGACAAAACCCAAGACccattcataaaaaaa-------aaaaa----------aaaactaaaaaataggcATAGAAAGATTTTACTGCAATTCTTTAAAAACCAGTCATTAAAAACTGGCCAACATTGTATTAAACtggaaaaaacagaaagtgtcccctccaaaaccagaga-gagacaaggatgcccactatcaccccTCCTGTTCAAAA-AGCACTCAAATCATTAGccagagaaat------agagaaaaagatataaaggatgtgcataggaaaggaaaaagtcaaattattattgCTTTCGGATAACATGATACTTTCCATATAAGATACCTGAAAAACTCCATGAGAAGACTTCTAGAATCAATAAACAAACGTAGCAAGGTAGcaggataaaaaaaatcaacacagaaacATCAATAGTTTGATGGTGCAAACATCTTTTGCACCagtaatgaactcactgagaaagaaattaggaaaacaataccatttacaGTAGCAtcagtgaaaaaatatatatgtaatatatacatatgtagatGCGTCcatatttaggaaataaaataatgaggATAGTAAAAGAATTCTACAACAAAACTGT--AGTACTTT--GGAAAAAATTGAACAGGACatccaaaatgtgaaaaaatatccCTTGTTCCTATGTAGGCAGAACCAATACTGTCAAAGTGATCAT

a score=31382
s chr3           120940915 2390 + 160039680 GACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAA-GAGCAGCCACA-----TTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGA--AACTAAACAGGGACACAC-----TGAAACTAA-------CAGAAG----TGATG-------------------------------------------------------AAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATT-GTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA-----ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAA-ATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCC-ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAG--AGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaa-attccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg-tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaag-----atggaaagatctcccat-gctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttacta
s HiC_scaffold_1  23001335 2268 + 233722169 GACTTCAAGCCAAAGCTGGTCAGAAGAG-CAAAGATGGCCACTatatattggttaagggaacaatttgACAAGAAAAGATATTGATTGTAAACA---------CAAATTTATTGAACATTCACACACTATTTCATAAAACAGTGCTAgcaa----caaaagataaataaaaatcaatacaattagaGTGGAGGACCACAATACCCaga----acaaagagacagatcaactaaataaacaaaatatacaagCAAATATCAGGTTTGAACCAATCCTCATCAGGAGATCCCAATGCGTATCTCCTATCTAGTATTACTTTTGGATACCTTACTTTGTTAATacactttgaaaaaaaatggac--AAGAACTATATACAgaatatttcaaacaaaaatgacaaaacat----tcTTCCCAAGAGCACAGACAAATATCTCCAAAATAGAC-Acaca-----------------cttaaataaat--aaaagtaatataatttATCCCATTCATATTATCAGACAAGAAtgcagtgaaactagaaatcaaggGCAAAAGAAACCATAGCCATTAtacaaaaacatggaaatcaaGTAATGCACTCA--AATAATGAGTGGGTCATAGATTAAATAAAGAAAGTAATTACAGAATTTCTAACATCAAATATTAATGCTGATACTGCACACTAGAAGCAATGGGACAAAACGCAAGTGGCGC--AGAGAGAATTTTAAAGtt-tgaatgcccacatcagaaaa-gcaAGATAGGCCAAAATAACTCTGTGATGT-----------GCTTCAAAcactgaggaaaaaaacaaacccaaaactagtccaaggaaggaaattataaatatcagagcagaaattaatgattttgagattaaaaaattacaattaatCAAAGAGTCAA--AAAt----------tcatttgaagaaa--agaaatatagaaaaagccTTAGTCAATcttataata----aaaaaggaaatacccAAAACAGAGcaattggaaatgaaaaatgtaagatCAAACTGGACACCTCATAAATAGAAATTATTAACAATTACATT---AAACACCTGTGCTCTAATAAATTGGAGAAGTTAGAAAAAATCGATAGAATCCTAAATACATG--AAGTAtgaaaacagagccaaaaaaatataaatattctgagTAATTTGACAAgtggcaatgaaattgaagcaggaataaaaataatctaCCAAC----ACAAGCCCAGAATATGATTAATTCAGTGCTGGTTTCTACAAGATTGTCATGGCAGATCTGACT-------------------------------------------TGCTCCTCAAATAATTCCTGGAAACTAGCATTTACATGGTTCCAAAACCAgataaaaatctaaacaaaaagcagaa-tagagcccaatctctttaatgaacataaaatcaaaataatgataataatatacTGGCAAACATAATGCACAAAATCATCAAAATGATCATACATCATAATCAAGTAGGCTTTTTCCCAAGGATAAAACGATGGTGCAATGTACTTAAATTTAATAAACATAATGCATCAc----acaaaagcaagaac-aaaatcaGATGATCATAAAATAAGCC-CAGGCAGAGCCTCTGAC-AGATCTAGCA-TCATTCACGATAAAATGCCCAAAGAAAATAGGTGTAGAAGGATTGTGTCTCAAACTGTTAAACGCCACTTATGAAAAACCAACTGccaaaattacattaaatacaaTTACAAGACAAAATCTTTTCCACTGTAATCAG-----ATACaagaatgttgtttttatcact-cttatttaatacagtcttgaaaatatt---caaatcatggaagggacaaaaaaa---taaaaggatatgaA-TAGAAAAGTGAAG---AACACATTACTC-------------------TGCATGTAA--GACCCCAAAACATTCCACAaaatgactcctaaaattaataaccaaatttatcAATATAACAGGATgcaaaatcaacacataaaattCAATGAAGttt----------------------gtgaaaaagaaattagtaaaataaaatcatgcatGATAGCACTAAGGACAAATAAATCCTTAGAAGCTCACTTAAAC-----AAGTGAgagatctatataaggaaaactACAATAATCTgaaaaaaggaatttgaaaag--CACAGCAGGAATTATAGAAATACTTTCAGTGGCTTA---ATAGCTAGAACTGatgaagtcaaaatgaccatatttccaaaactgctatacataTTTAATGAAGTCCTAATTCAAGTAACAACAGTATTCt--aacaa--tagagaaaaaaattctaaaattcacatggagctttaagaga--------aagaaaaccaatccTTGTTAAcaagagcaaggcaggaggcattgcaatctcagattttaaattatatta

a score=9358
s chr3           120940921 588 + 160039680 CAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTC----AATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA
s HiC_scaffold_1  25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGACATAAAGAGTCAGATAGACTTGAATATAGCA-TAGTTGGTAACTTCA-TACCCCAGTCTCACAA-------------------------TAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGCGG----------AATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGG---TCAATAATAAGTAATGAGAATGAA

a score=41150
s chr3           120940924 2565 + 160039680 CCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTC-----------------CAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTT-CTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACC--CAAACCTT-TGGGACAC------AATGAAAGCATTT------CTAAGA-GGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGG-------AGAGAGCACA-TACTAGC---AGCT------TGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG----GAAATAATCAAAC---TCAGGG------------GTGAAATCAACCAAGTG----GAAACAA--GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA---------AACCCTTAGCTA------------------------------GACTCACTAAAGGGCACAGGGACAAAATCCTAATTAA-------CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtacc--ttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagt---gaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttga-tctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaa-caattggtgctggcacaactgg
s HiC_scaffold_1 185915450 2554 + 233722169 ctcaaagtattTAAAAAGGGGGAAGATGGGGAGTGCA--ACCACCaggggttcaatccctggcactgcaggaaaggaaaaaaaggcataACAATTTCATATCTATATGAGCCCAGTGTTGGGTCATCTAAGTATATAAAGCAAACGTTAAtggacacaaaaagaaaaataggtagCAATGCCATAATTGTATAGGATTTCAATACTCCACTTTCAATA-TGGATAGATTAATCAGAcaggaaatgaatttaaaaatactggCTTCAAAATGCACGTTAGACAAAATGGACCTGATAGATACACATTGAAACCTCTGCccaaaagcaca-gaaaacatGTTCTTATTTAGTGTAT-ATAGATCATTCTCCAGGATAGACCATGTGTTATGCAATGACAAAATTcctcacaaatttttaaa-atcaaactcaTC--AAGTATTACTCTGAACTACAGTGACTTGAAATTAGGAATCATTACTAAGAGGAACTTTGGAAACCCTACGAGTACATGGAAATTAAGCCGGATGCCACTAAACAGTCAACAGGGCaatgaagaaattgaaagggaaatttttaaaattctagagaaaaatgaacatgaaaacacaacataattgcaggcatggtggtgcactcctgtaatcccagcactcgggaggctgaggcaggaggatcattgcaag-------ttcaagaccagcctgggctacaaagtgagctcaaggccagcctgaactgcatagtgagaccctgtctcaaacaggcaaaaataaataaataaaatcaac---agagGGATAGGGGTTAGTTCTGATATTATATAGCATGTTATGGTAACTATATATAGAAGAATCaattatgtatttcaaaacaaCTAGAGAAGAGCTTGAAGATT---CTCAACACagagata----tttgaaaatatgaaaatattagttACCATGATTTGACCATTATGTATTAGAAGCACGTATTCAGTGACAATACTGTGCCCCATAAATAGGTACAATTAGTGCatggcaattaaaaataaataaaatcacaggtAAGAAAAGAGATATAGCT---GATAccatagaaatacaaagaatcatgAAA--CTATTATGAACAACTTTacaccaaaaaattgaaaaatttt-----------ttggCTCCCAGTCATACAC-AGCTACCAAAAATTAATCAACAAGAAGCAGAAAATTCGATTATACCCATAGAGAGTAACAAGATTGG-GCAATC-TTAA-AGTCACCCA-CCAAA---------GGACTA-ATGGCTTCACTGTTGAATTCtcccaaacatttaaagaagaacCAGTATAAATTCTTCTCAGACTGTTCCTGAAAATCttagagaaaattatttca---aactcATTCCACAAGGCCAGTATTACTC-AATACCATAAACAAACAATGacaccataaaaa-agaaaactatacatCAATCTCCCTGAAGAACATAATTACAAAAATCCCCAACAAAATCCTAGCACACTGAATTAAGCAACACATTTGAAACATCACTCGCTGTAAACAAGTGGGGTTCATCCCCGGGATCccagaatggttcaacatatggaaatcaatcAACACGATTCATCACACTAAC-AACTGAAAGAC--AAACCCTATGATCATGTAA-TAGCTGCAGAAAAAGGATTTGATAAATGTTAACATGTTTTCATGATTAAGACTCTCAAAAATT--GgcataaaatgtacattttccaACACAGCAAAGGCTATCCATGACAAACCCACAGCTGACATCATACTGAATGCAAAAACGTTGACAAATTTTCCTCTAAGATCTAGACCGAGA-GTGAGTGCCCACTTT-----TACTAATATTCAGCACAATACTACAAGTCTTGGCCAGAGCAATTAagcaatagaaataaataaaagccatatGAATTAGAAAGAAGGAAGTCAAATTGT--TTCTTTGCAGATGACTTGGT----CTTAGAAGTTCAAACCTTAAAGCCTCCACCAAAAAACTGTTGATTC-AATGAACAAACGCAGTAAAGTTTcaggatacaa-------------aaatcagtagcattcctatacactaatagaGAACTCCCTGAAacagaaattaagaaagcaaTTTCATTTATAAGAGCTACCA--AAAATTAGATATCTAGGAATGCATTTACT--AGGAGGTAAAAGATTTCTATACT-AAATctataaaacattgatgaaagaaattgaagaaga-cacaaa------taagATATCCCATATTCATGGGTTAGAAGAATCCATGGTATTAAAATACCCATAATACCCAGAGCAATCTACAGAATCAATTAAATCTCTATCAAAATATCAATGtctttcttcacaaaaataga--gaaaaatcctAAGACTCATATAGAACAG-AGAAGACCCTGACTAACCAAA---------------------------GAGAGAATCAC--TCcctgattttaaaacatactaCAGAAGTCTAGTAACCAAAACAGCACAGTGCTAGTGTAAAGACAGACA--CAGgtcaacagaacaaaatagagggCTCAGAAATAAATCTGTGGATCTACAGACAACTGACTTTTTGACAAAGTA-CCAACAGCAAATACGGGGAAAAGAACAGTCTTATTAATTAAATAGTGTGGGGAAAGTTGG

a score=69065
s chr3           120940941 3277 + 160039680 AGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAA--TTC--TGAATATCTATGCTCCAAATACAAGAGCAGC-------------CACATTCAC--TAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATT--CACATGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATG--------AAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTG--ACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-------TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACA--AGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGAT----------CAGGAA--TTCAA---------------GGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcc-----------------------------------------------------------------------------------------------------aacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctc-tacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataa-aatatctcggcgtgac-------tctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtata--gagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat---gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga---------cctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggt-ggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaa
s HiC_scaffold_1  72973619 3284 + 233722169 AGACAAAAATGaacccatgaaacagatccaaggaGAAATCC------AGGagtttaaaaacttcattgaaagtatATGTAGCAAGTTGAATAACAGCAAGGATAGAAAATCAgatccaaaataaaagaatatgactaatgaccag-gaaaagaaagagactaACACAATTGAagtgggggaccttaataccccatacTTACAAATgcataaatcaactagacaaaaatatcAACAATGAAATGATACAATTAAACAtagcctgtgaacaaatgggcttggtGAATGTCTATGGAGTGTTTCGTCACAAAACAGAATTGTATACATTCTTGTCAGCTGCATATAGGACATTCTTCAAAATCAATCACATATCAGGCAACCAAACATGCTTTAGTAAATGTagaggaattgaaatcatcctatgcatattatctgatcatagtgcaatgaaagtGGAAACCAACaccaaagaaaatcacaaaaa--ctacattaaaatatggaaatgaaaGAACACTTTTCTGGGCAATGAaa---gggtcacagagaaaattaaaaacagaattaaatagtgtatatatttaaatgataatGATCATTTAAATGTATAACACACTGAAACTTATGAGACGCAATGGAAGCAGTCCTACAAGGGAACTTCC------------ACATCAGGATAgca---gaacaagctcaaataaccaacctaatgttgaacttcaaatttctagcaaaagaacaaatcaa---acccaaagcttgtaggagagaggaaattgtaaaaataagagtagaaattaatgcaatacagactaagaaaacaat--aaaaactcaaTGTATTGaaaa----gttctttgaaagaataaataaaattgataaaccaccATAGAACATgatcaaaaagaggaaaggaaaaa--caaatccatgcaaatag-aataaaaaggagaaaatcaaaatggattccACAGAAATCAAGGAGATAATTTATACCTACTATGAGAACCTATATTTcaataagatgaaaaacacagaagaaaaggatagattcctagacacaatTAGATTTTCAAAGCTAAATC---accaaatagaaaaattataaataacctgatgtcagccaatgaaattgaaaatgtaatgaaacctttttaccaataaagaaaagcccaggccctgatggagtcactgttgaattttatcagaaatttagagaa---ctaatGTTACTAATGTTGAAACActttaaataaattgaaacagAGCCAGTACtttcaaaatcattcctggaagcacctATTAACCTATTTCCACAACCAGAGA---ACCCAACCAAA--AGAAAGCTacagaccaatcttcctaatgaatacagatttaaaaaaaaaaagtcctcaataagatactggcaaacagaattcacaaac-catcaaaaacGTCATAAACCATGACCCACTATGATTCATCTcagaaatgcaaggatggttcaacatacagaaatcaataaatgta-------atattagCAGAACAAAAGTCAAAacttacatgatcatctcaatagatacagaaaaagcatttgacattaAGTCCAAcacccactcatgataaaaacctacagaaaatagCAGACTTACAGGAAATTGCAAACTTACAGAAAAGGTGggctttacttcaatctgataaatggcatctatgacaaaccaatagctaatatcatattaaatggtca-aaattggaagttttctctctaaaattgagaataagacaaggatgttcg-TTGCCACCACTCTTGTGGAAATTTTAC----------------AGCAAtcggaaaagtaaaagaaagaaaatgaatgaagataggaaaggaagaagttaaattatcatcatttgaaGATGATCTGATATTCTttatagaagatcccaaaacttTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA----------------------------TTCAGTAGTATgacaggatacaaagtcaacactcaaaactcagtcATTATTCTTGTACACCAACAACCAACtctcagaaagagaaattaaggaaaacacaTCCTT---AATAGC--ATATTATTATAATAGCATccagaaattattatttaatctaacaaaggatgtgaaagatctatacagtgaaaaccacagtaccctaaaaaaggagattgaagaagatatcagaaaatagaaagatatcgcTTGCTCttaga-cagaaaaacaaaca--gtgaaaatggTCCTACtctcaaaactgctatacagatttcaTTCAATCACAGTCAAAATACCATGAAtgtatctcacagatctagagaaaacatatgaaaagttcatctggaaccagaagaaactgaGAATAGCAAGAGTATTTATGTGTaacaaagacaaaacagc----agGCAAGGCACAATTGCAGacc-aaaattatactacaaagctactctgcaaaaatcagcattgtattggcaaaacaaaacaggcctGAAGAACAGTGGAACAGaagagaagatgcagacacaactcctaacacactcaactaccttatttCTGACacaggagccaaacatgttccctggaaggaAGATACTCTCtataataaatggtactggaaaaactggttttccatatgccaaagaatAAATCTGGACTCATGTTTCTC-ACATGCATCAAACtaacatcaaaatggatcaaacatctaaacattaaaacagacaTTCTTTATTTActtgaagagaaaataggtagaaatcttgaaaacatacaGGTCACCAGG----AACTCCAGACTACaaaggaaa-------tactacaa-----agaatcaacaaataagatcacaacttcttaaaaaaaaaaaaaaacctttg--acacaaaagaaatcaccaac-agatgAAAAGAtatccaacagaatgaaaaattatAGCCACTTGTCCT---TCAGACAAGGagtt-atatctagaatataaaatgaactgaaaattatCAGGCcacctaaattcaaa-gacctaatctaAAAATGTACCtc--------------aatacacac---------------------------------aaaaaagttca-------ttgtcactcaagagatgcaaatgaaaacaacatggcattttcatctcactccagaacgaatggctgtcatcaaaaaatcagtgaataacAAAT-ctgatgaggctgtggggaaaaaggaacccttttgcACTGTTAATGcaattgtagactggtgcaaccactataaAAATCAATATCAAGATTCTTTACAAAACTAGAATTACAGGTCCGGTTTGatgcagctattccccttctgagtataatgtcagaagaa

a score=14080
s chr3           120941022 840 + 160039680 TACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACA-ATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAA-CTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT---CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGC-CACAACGTACCCAAACCT--TTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG
s HiC_scaffold_1 154982297 788 + 233722169 taCTGGAGCAcccaaattaataaaacaaatactgcTGAC-CATGAGACATCAATTGAATACCAAGAAGATCATAGTTGAAGAACTTAGTAC-CTACTTTCACAACGAgtcagatcaactaaacaaaaaattcagtaaaaatatATTAGAACTGAATGTACTTTTGAA-CAGATAGACTTAATAGACAACTATAGAATGTTACACTGTAccacaacagaatacatattcttctcagcaagACACAGAGCTTTCTCCATTATAGACCACATACT-GGTCACAAAGCATGCCTAACAAACTACAAAAGTATTGACATCATCCAATGTTTACTATCAGAACATTGTGCATTGAAAGTAGGCATTAATCACAGAAAAAACTGTAATTTATAAATA-CCACTTGAAAAC--AATAACAATCTGGAACACAAAG------TGGT----GcataaaaaatcaaaggaaatgaaTAATTTCTGGAATCAAAT-AATATGAACTGTACAACACACCAGAACTTACCAGAGATACAAAGAAAGCAGTCTGAACATGGAAACATACAGCAATCAGTGTTCATACTACAAAACTagaatgagcccaaataaataatcaaatgatGAATATCAAGATActcaaaaatgaacaataaaatgaatttaaga-----------------------------atgGAAGAAATTAATGGAATCGAGActaagaaacaatat---aaaaatcagtgaatcaaagaa------cttttgaaaaataaataaaatatatggccACTCAGACAaacttaccaaaag----aaagaatgaatcgt-atcaatgcaattagaattGAAAAAGG

a score=10938
s chr3           120941084 552 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGAT-----------------------------------------------CATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAA-TAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAG
s HiC_scaffold_1 162323312 576 + 233722169 acacaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGATGAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaa-tatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAA----GCCATACAGCTTAGTTATa---------tcaata----caaaaa-attaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaa-aatcaaaggcaagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacag-aagaaatcaaatacttCATATAGTTAAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatt-taagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGG

a score=21742
s chr3           120941087 1152 + 160039680 CAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACAC--TCTTCTCAATGATAC-CTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA--------------ATCCTAATTAAC-------AAAATCAGAAATG-AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATA-----GAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC
s HiC_scaffold_1  66787240 1110 + 233722169 caattataacaggaaacctaaataacccactgtcacaaatagatcaaccagAGAAA---ATATCCAATGAAGAGATATCAGAGTTGCAAGAAACTTtgaaccaa-taaacttaataGAT---TAT------TTCCACCCAGCAGCAACagaataca--ttcttttcagcaataCACAAGACTTTCTCTGAAATATATCAAATACTAG----CCAAGAAggcttaaataaacacaaaagaatcaaaattatcccacacatgttatcagatcatagtgcagtGAAGCTAGAAATCAACGGCAAAAGAAACCAtggaaattatgcaaacacatgcaAAGTAAAATACACATGCAAAGTAAAAATACACTCAAATAATCAGTGAGTCATGGAAGGAATTGGACAGTTCTTAGAATC------AAATGACATTACAATGTACAAGAACCTATGAGACACAGCAGAAGCACTTATAAAAGGTAGGTTCATAGCTATCAATGCCCTCATCAGAAAA--AGAATGAACCCAAATAAATAAGCTAACAATGCACCTCAAGgttctaaaaaaaaat---ccaaat----ccaaatatagtacaaggaagaaaaatataaagatcagaaaagatattaatgaaatggagactcaagaaacaaaacaaaaaa-taacaaaatgaagatTTAGTTCAttgaaacattaaatgaaatagacAAATCC--GGTCTTCCccgaaaaaagacagaaagaaagaagagaaaagaaaggatgcAAATCAATCCAGTTAGAAGttagaaatgtaaaaatgcaAAACCACAATGAATTCTGCTAAAATTCAAAG-ATTATTAGTACTTACTCTGAGAACCTGTACTCCCGTAAAATAGAGAATTC--------------AATGATTAGAGACATATAAActa-caaagctgaatcaaga--aagtaaagatttttaataatCCATAATT-----AAGAAACAAGTTTGAAGAGTTTAAAAA----CTACTAACCAAGTAAAACAcaggtcttgatggatttactcccaaattctacaaaaattttaaggaaaatctaTTTCCAATACTCTTCAAGCTCcgtaataaaattgaaaaagaaagtacT--------GCCATTCTTGGAAGCTAGCATTAACCCGATTTCAAAACCTGAGAAGCACC

a score=10449
s chr3           120941088 690 + 160039680 AATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACA---------AATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTC-TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA--AGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1  96150032 642 + 233722169 aatcatagtgGGGGACTTTATTATTCCACTTTTACAATTAG----------GAACCAAAGATAAAGCAAGAA-------------ATATCAGCGTTGAAACATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATATCTTAGGCTTTAAg-catacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTACATAAACAATA----GATCACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGT--------------TTACATCTGTAAATGaacatacagaaagaatagaGGGATCCCA----AATAACTTAAGGATGACTCATGAACTCCTAGAAAGTTACAAA--AAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCA-AACAATATGAGGgactaatgaatcaaagagtgga--CTCTGAAAAAGT

a score=34740
s chr3           120941134 1884 + 160039680 TCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACT------------------AAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT---CTCAAT--GATACCTTGGTCAAGGAAGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCA-CATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGA-GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA--AAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG--ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT------CTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCAC--AAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACAT-----TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta---actcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1  38614215 1826 + 233722169 ttatataaaagaaaaataaatgag------ttgaaac------aaatttttgaacaaatgaacttaatagatatAAACAG--TGTTCCACCC---ATCAAGAGT---CACATTCTTTTCCATTGCATATGATAGTTTCTCCAGAATAGATCACA-----GTGAATAAAGCATTcctaagaaaatgcaaaagaatgaaaaatttaccatgcatattatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaa-aaataataaatccccAAA--CCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACCAGAACTCATGG-CCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaataggaaaatccaAA-----CCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaatcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaaggaaaaag---aaaacacaagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAG----TGTGCAAAACAGTGAGAGAACTCAGAAAAAAC----------TCAGACA--TACAAATTCCCAGAACTGACCCACAAAGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTT--CCAAAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGCAGGCAAAGAGAGT-----GACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA----GTCTAGCAAACTCTAACA-AAATTCTTGAAGAAAATT-------GTTTGGAAATTC---TTtagtac---aacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGA-AAGATGAACATCTTCACTCTGTTACCA------------------CCACT---------CTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGATGAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACT-CACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtag--aaataaaaaaataaatacacaaaaaag--aaaagcattcctAATAACAGTG-atgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=76578
s chr3           120941182 3273 + 160039680 ATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAA-TAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAG-----CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCA---AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATA-GAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA--GTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcca-acagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaa--------------------------cttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacac------ctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggaccta-atgaaactccaaagtttctgcaaggcaaaaga--cactgtctataagacaaaaagaacaccaacagactggg--aaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaa--aaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagc-------cccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaagg
s HiC_scaffold_1  52903752 3100 + 233722169 ATTGAACATATGCAT------GATATATACGGAGTATTTTACCCTTTTACAACAGAGTATACATCCTTTTCAGGAGTATAtggtactttttccaaaatagatcacatactagtcCACAAACCAggt-taagtaaatataaaagaattaaaattatcctatgcataccATTAGACCATTGtgcaatgaaaacagaaatcaatgacagaagaaaattttaaaaaggcaaaaa-ctcctggaaaattaacaatgtactcctaaacaaccagtggtccacagaagaaatcaaagaagaaagaaa----tttctggAAGTCAATGACAGTGACTGTATAACTCAGTGAAACCTCTGGGACACTACAAAACcaattctaagaggaaaattcTTAGATTTCAATCAC------------------AGAGCACACCCAAGTAAATAACCTTATGGGCAAATTTATGATACTCAAGAGACAAGAAACCAACCCCACAccaaa-------attaaggagaaaaattaaag--agagtGGAAACTGATAAAATtgagactgaaaaaaataaacagtaaaaaatcaagaaattgaagagctggttctttgaaagaatgaataaaatacataagCCATTAGCCAGACTCAC---------CAGGAGGAAGACTTACATTAatga--ttagaaatgaaaaaggtaaaatcacaacagataatttcaaaatccagaagatagtaa----ctactttgaaaatttatGCTCcaacaaattaacaaattttgaagaactggacagatttctagacacataCATACTACTAAAACTAACCCAAGAAGTCATAAAAATGCT---TATtccaataacaagcaatgaaattgacaCAGTAATAAAAAATCTACCAACTAAGGAAAACCTAGAACTTGataa-ttcactgctgaattctacaaaatcaTTAAGGATGTTACACCACTAATact-ctcaaactcttcaaagaaatttaaagggGATGGAGTGCTCCCAGATTCATTTATGGAAACCAGTGTCCCTGTAATCTCAAAACCAGATAAAGACTAGTTAAA-----AGAAATGTATGCCCATCTCCTTAGTGAATGTAGATGCAAAACTCTTCaacaagatattagcaaatagaat------acaCATTACCAAAAAGACCATACATCATAAC---GTAgttttcatcccagagatgcaggtatggttcaacatacataaatcagtatatgtaatacatcatataaaCAGGAGCCAAGACAAAAACCATGTGATCATATCAGTAGACACTGCAAAGGCTCTCAACAAAAGCCAACACCCCTTTATTTTGAAAACGGTATAGGAAGACC---------------ATACCTGAATATGAAAAAAGCTAT-TGTGACAAATCAGTAGC------CATACTAAATgtggaaaaactaaaaacattccc-CTAATGtagggaacaagacaaggatgtccactgtttcctcttctgttcaacaaagtacttgaaatattagccagagcaattaggcaagagcaagaaataaaagggCTACATATAGGAAAA---GAACTCAATTTATCATTGCTTGTAAATGATATGGTACTGTACATAGATGATCCAAAGAACTACACAaaaaaaactcttagaattaacAACCAACTTTAGCAGTGtagtaggatacaaaatcaacaca-------cattAGCTTTtgtgtacaccaataatgaacttgATGAGAAgagaattatgaaaacaatatcaTTCATAGTGGCTTCGAGGAAAATGAAACACCTAGGAACTAACCTAACCATGCCAGTGAGggatttttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaactactGTGAAGGAGAGTGAAGATGACATCAGAACATG----GGTGTCTCCTGTTTCTGAGTTGGCAGAACCAAAGAtatcaaaatggtcatact-------------------tccagtGCAGttcaaatcaaaataccaacagcgtACTTAACCAATCTAGAGAAAACAGccataaaattcatatggag-----------ctagaagagaagaaacaatCCTGGACAACAAGAGTGAAGCAGAAGGCACAGCAATACCTGACTTCAAGCTATA-TACAAAGCAGGAGTGAT-AAAATGGCATGGTACCAGAACAAAAACAGATTCATGGATCAACAGAACAGACTTAAGGATACA-AAACCCATCCATACACATTCAACTACAGT-ATTTGCTCTTTG-CAAAGGAGCCTACAAAATATGTTGGAGGAAAAATATCCTATTCAACAAGTAGTGATGGGAAACTTTATTATT----TGCAGAA-------AATGTACCTTTATGTCTCACCATATACTGAATTAAAAACGAAACtgatcaaagacctaaacattgaaacagaaacattaaatccacaggaagataaaataggaaaaacactT---CACATAGGTttaggaaaggattttctaaac--aacTCTAAT------CACAGAAAAAGCAAGAATGAACAAATAGGATTTATGTCTGATTCAGAAGCTTCTCTATAGCAAAAGAATCAATG---GTAGAGTGAAGAGGCAACCTACAGAGTGGGGAAAAGTATTGCCACCTgctcc---tcaga----ggactaatatctaaaatatacaaagaactcaaaaaattaatcT----AGGATTTAAAGATCTAGTCATGAAATGCTCCAAAGAAATGGACaca----tcacagaggaagaaatacaaatggccaacaaatatatgaaaaagtgttcaatatATCTGACTGttagtactgttttaatttgtatttgtctaagattccatcttgctctggaaagaatggcaatcatcaaaCAAATCAAACTGA---CAAATCCTGGAGTGGCCATGGTGAAAAAGGG--ACCCcttcactgttgctggaa-tgtaAGTTAGTACAAGCATTATAGAAATCGGTGTGGAGTTTTCTC----AACTGAAATTATAAATCCCATGTGACCCTGCTGTCCCCCTGCTGGGTATCTTCTCCAGAGAACTTAAGGCATCTTACTGCAGTAATTggtgcatac----caatgtttatagcagcacaactcttAATGGCTAACTCCAGGAAGCAGCCCATATGCCCACCAACAGAAAACTGGATAAAGAAGCTGTGGTATCTATGCATGATGGAATTCTACTCTGCT-----------------------------------CTGGATGCACCTGGAAAGTATAat-gtgagtgaaataaaccaggcacacaag

a score=11271
s chr3           120941198 580 + 160039680 TGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACC-ACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA--AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1  96522418 566 + 233722169 TGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTTAAaca----caaaaatactgaaataatacAGTGCATATTAATGGGTCAT-----actaaaatgaa-----attagaaagccacaaaaaagaaactgctcagatCCATGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaataca--aatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=58501
s chr3           120941207 2835 + 160039680 TCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAA-CTCATAGCTATGAGTGCCTTCA-AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC-----------------TAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGG-TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA---TCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA-CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATG---AACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAG-------------------CAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAAC--CACATGATCATCTCGTTAGA--TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG-----TTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGG---------CTGC--CCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgac-------ctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggctt----------------------------gtgctgtaagatcgag----------------------------------------------------------------------------------------------aattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggg--gct----------------cagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaatt
s HiC_scaffold_1 223975016 2809 + 233722169 TCTACACAACAatt---acaacaacaacagaatacacattcttctcaggaatACACgggattttctccaaaatggaccaTGTGCTACCT-ATAacacatgcttaagtaaataaaaaaaaactgaaattattccatgcatattatcaaatcat-ataaaatgaaactaaaaatcaatggcaaaagaaatcccAGAAAGTAggcaagcacatggaaattaaacaataccctccAAAAT--------------------AATCAAGAGATAA------------------------------------------------------------------------TTCCTAAAATCaaaagtttatagctgtgaatattcacataagagaaacaagAGTGAGCTCAAG---------TAATGAAACCCCTcaaattcttaagaaaaaaaaaa---------tcccaaactagtacaaagaagtaaattatataaagcagaacagaaattaattaaattaagaccaaaaaaac-----aaaaaatcaatgaataagaTAGCcagttctttaaaataacaaataaaatagacCAACACTTACCCAATCTAGCCCCCCAAAAAAGacaattagaaagaaaagaaaaagaa----agaaaatgaaattagaaataaaaaaggcaaaatcagaaCAGACAAAACCAATATCCAAAG-ATTACTAGTaacttt---gaaaacctatattctaataaaatggaaaattccaaagaaatgaatagattattgca----tatgaattaccaaaactggaccaacaaaataaaaaaaccctgAGTAATCCATTAACAGGCAGTGAAACTGAAgtagtagttta-------------aaaaaaaaaccaagactaCCAAGGATCTACCTCCAAAGTCTACAAGAATTTTAGGAAAGTCCTTCTAAGGTcaatacttctcaaattctttaatgacgttgaaagggaaggaatactccGCAAATCATCCCCAGATGTAAC-ATTACGCTGATTCCTAAAACCAGAAGAGGATCCaagcaagaaagagaactacatgaCAGTATCTCTAACAGCAAACATGGACTAAAAAATCCTCGACAAGATATTGGTAAATAGAATGCCACAAATCATCAAATATATTTGGTCATATATATTTGGTCATATATCAcgaccaaataggattcatcccaggcgtgCAGGGGT----CAACATAC--AAGTCAGTAAAT----------AAATCAACAGAACCAACgacaaaaatatcacatcatcatctcaatagacatgaaaaaaaaacctttgacaaaatccaacattcattcgtgataaaaaaaaaaccctgaagaaaacaggtat---agaaTTTTACCTCAC--TGATAAAGGCCATTTGGGAGTAACCTACTGTCAACGTCACATTAAATGGGAAAAAGCTGAAAGTTTTCCCTCTAAAGTCAGGTACAAGCCAAGGATTATTCACCTGctttcactatcaccactcttgttTAATAGAGTTCTCAAAACATCAATCAGAGCAATcagtcaagagaaagaaataaaagaggggtaa----gaaagaaagaagtcaaattatta---tttgcaggtgaTAGGATCCTCTATAGAAGAAGC---AAAAGTTCCATGCAAAAACTCCTGGAATTAATACACAAACTGGGCAATGcagcaaaatacaaaatcaacactcgaGAATCAGCGGTGTTCCTGTATTCCAGTAATGAACACACTgagaaagaaagtaagagaaCAACTCCATCCACGAgagcaccaagaaaaattaagtgCTTAGGagttaacctaaccaaggaagtgaaagatctg-------------------------------------aagaggacatcagaaaacagaaagatatcccAT--TCCTAGATAGGCAGAGCCAACACTGCCAAAACGGCCACACgtccaaaactgatacacagatataacacaattccaatcaaaagacCAATAGAATTCCTCACAAAACTACAgcaagcaatcctaaaattcatatgcaagcataagagacccagaatagcaaacacaatccacaaaaccaaagcaa------gagGCCTCAGAATCCCAGACTACAAAGCCACAGTTATCCTACAAAACtacagttacaaaaaaaaaaaaaaaaaacagtattggCAAAAACACAGACATACAGATCAACGGAACAGAACAGAAGGTTCA-AAGCCAGCTCCAGCACGTTCAgctacctcatctttgacaaaggtgccaaaaacaTACACTTAAACA---ActgcctctttaacaaatggtgttgagaAAACTAGCTACCCACAAGTATAAGATGGAATCTAGATCCCT--CTCCCACTATGTACgcaactaaaaccaaaatggatcaaaggcctGAACACTGAACCAGAAACAAT----CTGCTGTAAcataaaacaggtaaaattcttgaaga------cataggtgaaGATTTTCTGATcagaaccccagttgcacaatAATAGCAAACCTACTGTTAACAGGagtggtgagagagagagagagagggtgtcCTTGACTTTCCTGAGTTCAGAGGGAAAGCTTTCCGCTCTTCCCCATGTGACCTGACAGCAGGTTTATTATAAAGACCTACCAAATCAACAAATAGGGtcatataaaattaaacagcttctgcacagcaaagcaaACAACCAACATAGTAAAGAGACggcctacagaatgagaaaaaag-tttGCCAGCTACATGtcagataaaggactaatatctaa-atatataaataactcaa-agagTGCccct---aaaattaaa-gacccaatcaaaaaatgggcaactggaaaaaaatgggcaactgaaatgaacataTACTTCTca--ggagaaata-caaataattagtaaatacatgaaaaaaatgttcgaTGTTTCTggctatttgagaaatgcaaattaaaataacactaagattccatcttattccagaaagaatgactatcatcaaaaatt

a score=10254
s chr3           120941228 604 + 160039680 AAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACA-TCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA-CTATTCAAAGAATTAACCAA---------ACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAAT
s HiC_scaffold_1 129059242 565 + 233722169 aaacaacagaaTTCACATTCTTAGCAGCAC---ATGGAAGTTTCTCCAAGGTTGAACTCATACTAAGCCATAAAGCATACTTAGGTAAATCCAAAAGTTTCAAAATTATACAATCTA--CTATCAGCTTATGGCACAGTGAaagtagaaatcaatggcaagaaaaaccacaaaaattatgCAAATGGATGGAAATCAAACAGTATTCACTTGAATAAT-CaatggtcacagaagaaatcagggaagCAATTAG----CTCCTAGAGTCAAATGATGATACTAGTACAACA---CCACAAATACGGGACAGGATGAAAGC---------AAGcatgtttatagctgtgaat--------tAACAAATCAGAGTGACTAAAAA--AATAACCTCATGATGCACTGCAAGGGCCCAAACACACAAGGA-------CAATCCAAAAGTTTCACAgtgaatgaaattataaatatcagag------tagATGAAATGGAAACTGCAAAaagcaatataaagaatcaatgaatctaaGATCTCTAAGAGTCagttc-ttgaaagaataaataaaatagacaaaactttaat----cttaccaaaataaataaaaacaaaat

a score=32963
s chr3           120941309 1744 + 160039680 TCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAA-TTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAG------------AGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAAT-TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC---CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATA--GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG--ATCCAACAAAGATAGAGAAC--TTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCAT-CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCA-AACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattag---ccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaat-tagggaaacaacacccttctcaatagccac-----aaataat--------ataaaatatctcggcgtg--------actctaacgaaggaagt---gaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaaga
s HiC_scaffold_1  63894708 1658 + 233722169 TCAACAAATTATAAAAAGCTGAAATCATATCAAGTATCTTTTCTGACCGCAGTGCAATAA--------------CACAAGAAAGACTTTAAAAACTatacaaatacatagaaattaaacaaaatattccAGAATAACCAATagattgaagaagaaattaagaaggaAACTTAAAAAATTCTCAAA--CAAATGAACACGAAAATACAACATACAAAAACTTATAGAATACAGAGATAGTAGACAGAGATAGTAGTACTGCAAGGAAGCTTGTAGCAGTCAATAGCTACAAAAAGAAA---GCACAAGCATCT-CAGACAACTTATCAGCAAACCTCAAGGAACTAGAAAAA---TAAGCCAG---GCTTAAGACTAGTAGAAAGAAAGTAATAATAAAG--------------------ACtagaaaaaatagagac-----aaaaaatcaatgaaacag-----------ttttaaaaaac--ataagattaataACCCCCTAGCCTA--TGAGAaagatggggggggggagaacTCAAATGTAATCAGagttgaaataaaaaaggagataatACAATTGAC---------ACACAAGACACAGTCACTAAAGACTTATAAACAATCATATGC-CAACAGATCTT-ACAActtagaagaaatagacaaaatctTTGACATAC-----GTATCTTAAGTGATtcatgaagaaatgagaaacGTGAATGATACTG----------------------AGTTAGTAATAAGGTCTCTCAtcaaagaaaaagccagaa--aaaatgGCTTCATTACTAATTTTACCTATCACTTAAAGGAGAACTAATACCAATTC-ACTTAGATtattgcaaaaaattaaaaatgaagaaattctcCCAAACTGATTCTAGGAGGCCAGCATTATTCTGACTCCAAAATCAGATAAGaccattaaaaaaagagagaaaaaagtacaggccAATATTCCTGATAAACATAactgcaaaaatcttcaacacaATATTAGCAAACTGAGTCAAAAGA-------------TTAttcatcatgatcaagtggaattcattc-aaGGAGataagaatggttcaacatacacaaatcaatgtaATATGCCACATCGCACCAATATTATGAAAGATCAAAACCATATAAGCATCTCATTAGACACAGGAAAAGCCCTTGATAAAATTCGATATCCTTTC---ACAAAAACTCTGAGCAAATTAGTTACAGAAGGTATGCGTCTGAACACAATAAAGGTCCCACATAACATGCCCCATAGCTAACATCACACTGAATGGACAGAAGCTGAAACCTTTCTCCCAGAAATTTGGATCAGGACAAACATGTCTACTTGCAACATTTCTATTCAACGTAATACAGGAAGGATTAGGCAGCAGAagaattaggcaagagaaagaaatgaaaggcatccaagttaaagagaaaaaagccaaatTGTCActatttccagatgacatga---tatattaaaaaaacct--aaaatttcaCCAT---ACTGttcaa----ataaacaaattcagtaaaattAA-AGATTCAaaa-caacatacaaaaatcagtagtgttTCTATAAACCAATAGTGAATTAtctaaaaaagaaatctagaaacATAATCTCATTTACAACagctacattaaaaataatgaaacgaaacaaaacacacacacaaaaaaaaaacactctgg-GAAGAAATTTTAGAGAGATATCTAccatgaaaactttaaaattcttatgaaagaaattaaaaaaga

a score=12915
s chr3           120941368 597 + 160039680 AGGCTGATCTTCAATAACAA----AATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACT-------AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC--TAAAGGGCACAGGGACA----AAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA----------CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGACGAAATGGACAAATTT
s HiC_scaffold_1 121849223 588 + 233722169 AAACtgatttttcatgaaaataaaaacaaatatcagTTAAGTGTTATTGA---------TTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGA------ATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTAT-------ttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaattt

a score=35238
s chr3           120941396 1448 + 160039680 ACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCT---CAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGT--GCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC----ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAA-ACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGT-----------GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGC-AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc--actttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttc
s HiC_scaffold_1 167392364 1376 + 233722169 acagAAATTCTTTAAACCCatagaaatcaaacaatactcTCTTGAATAATGAGATCTTGGC------------------AGAAATTAAG---TTCTTAGAATCAAATGATTATGTAAATAAAACGTACTAGAACtaatgagacacaatgaaagctgtcctaagagagaagtttatagctgtgaataagcacatcagaaaaacagaatgcgttcaaatgaaataaacttttgGTTATTTCTATCTCAAGACcgtagaaaaacaagaacaacccAAACCCAAAGATAGCATCAGCAAGGCAATTATAAAGACTAAGCagtga--taaataaaattgagcctaaaa-aatta--caaagaatcaatgacttGGACAGCTGGTGCTttgaaacactaaacaaaatagacaaactcttAACCAATCGTATCGAAACcaaaaaagac-----ccaaatcaatacaatgagaaatggaaaaggtgaaatcacaaaagACTGTGCTAAAATCTAGACTATCATGGAAAACTACTTTGAGAATCTgtactaaaaaa----ggaaaattcagaagaaattgaTAGGTATCTAAATACATATGaa----caaagctcaatcaagaagatataaaaatcctgactgATTTAACATctgtcaatgaaactgaaa-----attaaaaagctactaactaagaaaagcccaggtcttgacaAAATCACTTGGCAAATTCTACTAAATTCTACTAAAACTTTGGAGAAGCTCTAACACCAGTACTCTTCAAACTGTTTAACAAAATCGAAAGGGAACTACTACTTCCAAACTAATTCCCAGAAAAAACCATTAACCTGATTCccaaaccagaaaaggacccaaccaG-------------AAACCAAGCTCTTCAATGAACAtttatgcaaaaatcttcaataagatattagcaaacagaatgcaacaaatcatcaaaaagatcataaagC--AATCA------------Ccaaaggatgcagggatggtccaacacatgcaaatcaataaatataacctaccacacaaacagaagcaaagacaaaagtcac-------tctcaagagatgcagaaaaagcacttgacaaaatccaacatccattcataatAACAATCCTGAAGTCACT--GTACAGaaagtctttatttcaatctgttcAAACCTATTCATGACAAAACCAAAAGTCATC----TATTGAGTGAAGAGAAGCTAAAGTTTATTCTG-TAAGATCAGGAATGAGACAAAGATGTCAACTGTCAACACtactgttcaatatagttctcaaaaTGCTGGTCAGAGCAATCACagtagagaaggaaataaaagggatat-tacaggaaaataagaaattaaattattaaaatatttgcagatgacatgatcctctaca-----gatccccaaaacttcaccaaaaaactccta-----gaaaaacaagTTC

a score=13366
s chr3           120941416 858 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAA------------TTCACCCAAGAGGAGTAG--ACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACA----AAGATAGAGAACTTCAGACCAAT-TTCTCTT
s HiC_scaffold_1  77585700 816 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcag-gataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGACAATTTAAT-----ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt

a score=32639
s chr3           120941416 3034 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAA-AGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT-------AGACTC---ACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA-AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAG--------AAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaa---------taaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtat----gataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattc-atctggaataacaaaaaaccgaggatag---caaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagac-actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca-----caggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagatagggga---------------------ctaa---tatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcac----ctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacac--tcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca-tagtactaccggaggatccagca----atacctctcctgggcatatatccagaaga----agccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaa---cagaggaatggatacagaaaatgt--------ggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa--tggatggacctggagagcatcatcctgagtgaggtaacacaatcac
s HiC_scaffold_1  38267598 2854 + 233722169 TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAG-AATGCAGGA-GAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaat-taaaggaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAGGagctagaggaaaaaaaaaatcaaa----cataagag------agggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggtttttaaaaacaaataaatattaaaaagacccTTTATTTATTATTAGAGTTTggattaaggaaaaaagagaaatgata-tagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGG-TGAATTATTTGGCACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATA-------ATGAAACAGGACTTTGGAACCATAATTTAATAATCTCACTGA-AAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaa-tatttcttgaaatcaaagataagaaaatacttgcaaattcACTT-ACGAGGCTAGCATGACCCTGATAAA-AAGGTACATtaggataggaaagaaa-agaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGAATCCTCAACAAAAC---------------ACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGTTA---------TACACAGAAA--------AaccttttcttctaaaatcagaGAGAAGACACGAATG------TTCTCATTTCTATTTCAGAGGAGCAGTGAAAGTCCCTTCCAGAAGAATAAGCATAAAAAATAGGTTAAAAAGCATCTAAAccagaa---agaaagtaaaatggcTCCTATTTGCTGATGTCATCAAA----------------------------------------------------------TCAATGAAGTTGCAGGATA-AAAACTAACATGCAAAATTAAGCAACATTACTACAAACAGACAATGAAGTATTTGAACATTTTGAGCAAGAAA----------ACGACTCTATTGAGTA--cattaagtatttaaaatacttgggaataaattagaaaaatgagcTAAAATATCTCTGTACTCGAGTAAAACC------------AAaaagtaattaaacagaa---aaataaatagaaagatattcaaCATCCATGAATTAG------------TGTAAAAACATC-AGTATACCCAAAGCAACCTACAG--TCAGTATGATTCCTATTAAAATGCCAGTGTCTGTTCTCatagaaatagtaaaataaatgttaacttttaatataaaatcaCAAAAGACTGTGACCAGCTACAGAAA----Tcttaagca-aaaagaacaaaccTGAAGCCTTCATACTACCCGATTCCCAAATCTGCCACCAAATTATTTTaatcaagacagtgtgacacTTGAAAACATTCAG---AGCAGCACAATAGAACA------ATCAGCTGAGAACAAAGTTACACATTTATGGCCAACAGATCTTCAACACAGTA-CCAAGATCA--CAATAGAAAAAA-----CTTCTTTAATAACAATTGCTGAGAAAACT--------TTAATTCACAGAATGAAACCAGACTCTTATTTTGTACAGTATACAAAAGCCAgcttaaaatagataaaagatttaAGCATAAGAAAGCAAACTACTGGA----AGAAAGCAAATAGAAGAAACAAACCTC-------TTGGCATCCTGCTGGGCGA----CTTTGTAGATGACCCCAAAAGCAGAAATAACAAAAGTAAGAGTGGATCAGTGGGATTACATCACATGAAAATGCTCT------GCACAGAACAGTGACAATTA------------ACTAGCAGAATGGGAGGAAGTATTTGGAGATTGTACATCTGATAAGATCAGCACCTTATCAAAAACATCTCTAAATGTACccaaaatacatgaagaactcaAGTTGCTCTATAGCTAAGTAT-AAATAATCTGGTTTTAAAATGGACAATGGA--TAAATAGATATTTTTTGCAAAGATGAGT--TACAAGTTGACTGACGGGTATATAAAAGTGTGTTCAATACTACTAAGTCTAAGGGGTGTGCACATCAAATCTATAATGAGTCACCATACCACTCTCATAGGCACAGTTactatgaaaaagacaaaagacaataaaagttGATAAGGATATGAAGTAAGAGAAACTCTGTATTCCA---TTGGTGGAGATATAAATTGGTACAACCgtcatggaaaacagtatggatattcttttaaaaatgagaaagtacagcTATCACACAGCTTGGCACCTTATACATTT-----GTCTGTACTCATGGGATATGAAATCAGGATGTTACGGAGATGTCA--CTCCA--GTGTTCACTGTGATGTTACCTAAGTTAGCT--AAGCTGTGAGT--TCCATCTGAGACTCAAGAGCAAATAAGCCAACAAATAAGATGGGCTATGAAGATATAAGCATACAGTAGAATATTACTCATTT-CTAAGAAGAAGGCATC-------TTCTTGTGCTAACTTGAAGGAACTTGGAGGACATGATGCTAAGTAAAGTAAGCCAGGCAC

a score=10905
s chr3           120941497 465 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACA-CATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattc------------------------acacatcag------gaaaacagaacctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacataaattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=34560
s chr3           120941525 1547 + 160039680 ACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCT-AAAAGCTCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC-CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT---------------------------------------------------------------------------AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA-----AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAA----AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagat
s HiC_scaffold_1  44540947 1570 + 233722169 ACCGGCGGGACCCAGTGCAAACAGTCCTGCAAGGGAGGTTTACAGCTGTGCACACCA-CATGGGAAAGGCACAGGGAGCCCGCATAAGTGACCCGATGGTGTTTTTCGAGGGGCCTGGAAAAACAagaaatccaaat----ccaaagctaggacaaggaggaaaattataaagatcgggacagaaatcaatgcaattgagattttttaaaactac----agagTCAACGAATCAAACAGCTGCTTCTTGAGAAGAATAAACCGAAGAGACAAACGCTTAGCCAGCCTTACCCAAAAACGTAAG---AAAAGACCAATCAGTGAacttagaaattaaaaaggcaaaatcaaaaaAGACACCactgaaattcagattattagtaactactt----GAAAACCTGTACACCAATAAATTGGAGGatccagaagaaatggagagattcctaaATACATGAGAATTACCAAAACAgaagtaagaaaatataaaaatcttgaaTAGGCCAATAACAGGTAGTGAAATTGAAgcaataattttgttttggaattctatattatcatttttatccttttttcattttaagatttaaaaaaattgaaacaataataaaaaaaacctaccaaGTAAGAAAAGCCTAGGACCCAATGAATTCACCAGTGAATTCTACAGAGACTTCAGGAAAGATCTAACAGCCACatgcctcaaactcttcaatgacactgaaagggaagcagtacccCCAATGTCATTCC-TGGAACAAGCGTTcacctgattccaaaaccagacaaacagCCAAGCACAAAAGAGAACTACGGACCGATCTCTTatatgaacatagaag-aaaagtTCTCaggaaaatactggcaaacagagcACAACAAGTCATCATCAGAAAGTCGTCACACATCA-GACCAAGTAGGCGCCATCTCAGGG---------TGGTTTGATGTATGCATTTAAATCAATAGATGTCATTCaccacagaaacagaaacaaggatgAGAATCACATCAGCATCTCAGCAGGTGCAGAGAAAGCCTTTGGCAAAGTCCAAAGTCTATTCATGA-AAAAACCtagaagaaaacagatataaaagggctttatctcaatctgat-agagccatctatgacaaaccttaTGCCTACATTATATTAAAAGGTGAGagatt--------tctctctaaaatca-ggagtaGA----------CACTCTCACCACTCCTGTTTGACATAGCACTCAAAGCATTAGCCAGATCagtcaggaaaaggaaagaaataaaaggggta-ggATAGGAAAGGGGTAAGTTAGACCATCACCATCTGCAGATGGTCTGATTCTCTATAAAGAAGGGCC--AAAATGCCACCAAAA-----CTGGTACAGTTAACCAGC-TCAGTAGTGTAGGAGGATTCAAAATGAATACACA-AAACCAGTAGTGTTCCTGTACCTCAACAATGAACTTACTGAGAAGGAAG-TGGGAACCCAATACCATTTCCAATAGCgataaa-aattaaacaca----ggaattaacctaaccaagagaGTGAAAGATCTccaccatgacaactacagtacCCTGAAAAGGGAAATCAAGGAGAATATCAGGAAGTGGGGAGAT

a score=26252
s chr3           120941538 1937 + 160039680 AATGAAAGCATTTCTA-------AGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC----ATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTG--------AAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTC----TCCCAGCCAAAA---AAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTA---GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCA--CAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAG----GGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaatt-cttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggt
s HiC_scaffold_1  34237452 1824 + 233722169 aatgaaagcagtcaaggaaaaataaaaagaaatccattATTATAAATGCCC---------AATAAGAAAACCCTCAAATCAATGACCTGAAAACTCTGAACCCTTAAAACATTGGAAAAAGAATGGACTAA---ACCTAAACCAAGTAAA-GGAGGGAAATAATAAACATGAAAGTGCAAATTAATGAAGTAGAGAACAGAAAACTAATAAATTCAGTCAATGAAACTAA-ATCTGTTTGTTTGAAAAAGATAAGAGAATTGACAACTCTGTGACTAgtttgagtaaaa---aaaaataaagaatgctcAGTACTAGAGCTGGAAATAAGAGCAGGAACATTGCTATTGAACTCAGTAACAAAAAGGATTCTAAGGCA--ATAAGATGAATT-----AATGCTATGTTAAT--AAATCAGAGAAC----ATAAAGTGGGAAAATTTCTAGAAGGATAT----TATCAAA-CCATctcaagaagaaataga---tttgaaTGTATCTATAAC-----AGGAAAGGGTGTCAATTATGTATAATCAAAATATTATACACAATGGAAAGCCCAGATTCCCATGAA--------------CTACTAAACACTTAATGAGGA-ATAATATCAATGCTTCAAACtctattccaaaaaaaaaatttaaaggagggaACTCTTTCCAACGCACACTGCAAATCCAGTATTACCTCGAAACTAAAATGAGACAGAGACATCT--------CAGAAAACAACAGATCACTATCTCTTATAAACAGGGACACAAAAATTCTCAGCAAAATACTCATAAACTGAATCCAGCAccatataaaaaaaattataaaccatGGCCAACTGGGGTTTATCTCA-GGATGCAAGCTTGGTTTAACATctaaaaatcaattaatgtaatacaccatatcagcaggataaaaaataaaaaacacatgatcatctcaatagacaaagtaaaagcatttgacaaagtccaaaactctttcatggttaaagaagaaaacaaatcagcAATAGAAGGAAGCTTTCTCAGGTTGATAAAGGACATCTACAAACCTCCATT-GCAAACTTTATATTAAATAGTTAAATACTAGgtgatttctctttaatttcagaTCTAAGAAAGAGAAGTCTGTTCTCATTGTTTGCACTT----------GAACTGGAGGCTTCCAATAGggtaattaaacaa-aaaaaaatttaaaaagcatctagattggaaaagaaaaagtaaaataagctcTATTTGTAGAAGACATGACTCTATATAGAGAAAATCCTAAGGAAGTc-actaaaaattattaaa-ataataaatcccTTCAACAAGTTTATAAAATACTAAATCAATATATATAA-tcagttgtatttct---------gttttaataaactaaaataaaattta--aaaataa-----ttaacaatagcatcaaaaagaataaaatac---------aaatcaacttaacaaacacaaaa----catactgaaaaatACA-----TTCGTAAAAGAAATT----------------GATGAAAGCATAT--CATGTTCCTAGATTAGAAGAA--AATATCAGTAGGAAATCAATACTTCCAAAG-----TTACACAATCAGCACAATTCTCACCAGAATGTCTAGTGGATGATTTTTATAAATCACAAGCTG--ATTCTAAAATCGACATAAAATTCCAAAGGGCTCACACCAACCCAAATTATCATAAAAACTTTGAACAAAGTTGGTAGGCTCACACTTTCTGACTTCAAAACTTACTGCAAAATAACAGCAAC-CATACTGTGTCATTCTTGTGTCAGGGTTG-CATGTAGATCAATGCAATGAATTTGGAG-TTCGAATATGAACCTATGCACCCATGGTCAATT--TTTTTCCCATGGGCACTGAGATCATTCCATGG-AGAAAGACTAACCTTTCAATAAATGAT

a score=16142
s chr3           120941552 864 + 160039680 TAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGA---AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGC--------TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA
s HiC_scaffold_1 187840076 856 + 233722169 TGAGGAGAAAATTTATAGCCATGAATGACTTCATCACAAAAACAGAGTAAGCCCAAATAGATATTTTAACCACACACCTCAAAGTCTGAGAAAAGCAAGAA-TGATTCCAAGTAATAGCCAGTACAagcaagaaaattataaaaaatgggagcaagaaaatcaatgaaattgagacaa-agtaattaaatgaagaattaatcatg-gaaatgttcatt-tttgaaggaataaatgaaatagaaaaatcctTAGGCAGTTTATCCATA----------AAAAAGTCCAAataaatgcaattagaaataaaaatgatgaaatcatAGCGAACACtgccaaaatgaaaaagattatt-gACTATTTTACATA--TCTGGATGCAATTAATTGGAGATTTCAGAGTTAAATGGATACactcctagatacatatgaattctcaaaactgaaccaagaagatttaaaaacactCAATA-TTCAGTAATAGATAATAAAATGGAGGCAGTAATAAAAATACCCTACAAACTAAGAAAACTCTAGGTCTGTAttcattcactgatgaattctcaAAACACTTCTGGTCAAATCTAACACCTATGTATTTCAAGATgcttagtgaaattgaaaaggaaggggTACTCCCAAAGTCCTTCCTGGAAGTTATCAGTACCTcgatttcaaaaccagacaaggacccagtggggggaaaaaaaaagaactgtgtaTCAACTATTTTAATGTAGACAGATGAAAAATTCCTCAAGAAGATACTGGCAATTAGGGCAACCGAT----------CACCAAAGAGATCATACATCTCGACCAAACAGGCTTTATCCCAGGGCCTTGATGATGGTTCAATATAAGCAAATCAGTAAGTGTGA

a score=59737
s chr3           120941589 2406 + 160039680 AAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTT-CTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGAT-AGAAGTAGA-AGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCC-----CACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatca-aggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaa-ttaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacct--ctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgac------------aagggag---------------ccaaaaccatccag------------------------tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaag----atcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaa-agacactgtctataagacaaaaagaacaccaacagactgggaaaggatctt--tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctc---agaactgaacaaa------gaattctcacctgaggaatac-cgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac
s HiC_scaffold_1 120882403 2354 + 233722169 aaaacg--aataagcccaaataaataacctagcgATGAACCCTAtaatcctagaaaaacaaaaacaatccagACCCAGAGCTAGtccaaggaaggaaattatacagatcagagtggaaatcaatgaaattgagacaaaaattac-----aaagaattaatgaatcaa--agttagttctttgaaagaataaacaaaatagacaaaac---agccaatataatgaaaaagga--gggaaaaggcctacatcaatgcaattagaaatgaaaaagatgaaatcacaacagacactgcCAAGATTAAAAAGATTATTAACTACTT-TGCAAAA--CTGTATGCCAATTAACTGGAGAATTCAGAAGATATGGAtagattcctaaatacatatgagTTATCAAAACAGAGCCCAGATTTAA---AAactctgaataatccaataatagacaatgaaattgaaacagtaataaa-aacttaccaactaagaaaagcccaagtctgGATGGATGGACTGCTGAATTTCTACAAAAATTTCAGAGAAGATCTAATACCAATGCTCCTCacgctctttaatgaaattaaaagtagaGAAGCACTC---CCAAATCATTCCTGGAATACAGAATTAACATGACTCCAACATCATACAAGgactcaactaaaaaaaagaactatagaacaatttctttaatgaatatagacgtaaaaatcttcaacaagaaACTGGCAAACTGAATGTAACACATCACTGAGAAGATCATTTATCATGACCA----------------------------TAGTTTAACatactcaaataaataaatgtaacatatcacataaacagaagcaagagcAAAACTCATATGATCATCCCAATAGATGCATAGAAAATCTTTGACAAAATTCATTATCCTTTCATGATTGAAAACACTgcagaaaataggtatagaagaaCCTTATCTTAac-tgataaaagctatttatgacaaacctactgccaGAATCCTATCAAATGGGGAAAAATTGAAACCTTtctctctaaaattaggaacaaaac-aGTCTGCTATGAGCACTATCAGCATTCCTGTTCAGCATAGTCCTTAAAACATTAGcaagaacaattaggcaagaaaaaagaattacaagggatatgtataggaaaagaagaagccaaattataattatttgtaggTGACATGTTTCTCCTCATAAAAGATCTCAGAAACT-CaacaaaagactcctagaatgaATAATCAAATTTACAGATACAGTAGGATACAAAACTCAACACgaaaaaaccaatagcattcctctacactaatAACAAACCCACTGagtaagaaattaggaaacaaataCCACTCATGAAGacaccaagaaaaaataaatacttagg-----------ctaaagaagtgaaagacctctacaatgaaaaatacagtgctctgaa-aaaggaatCAAAG-GGACATCAGAAGATGGAAAAGTATCACCTGTACCTGAATTGGTAGACCCCGTG-TACCAAAATGGCTATATTTCCAAAATCGTTTTATAGATTTAACACACTTCCAATT-AAATACTAACATGCTTCttcaaaggaat-gaaaaagtaatcctaaaatttatatagaaccaGAAGAGCCCTAGAATGGCAAAAGCAGTCTTGAGTAACAAGAGCATATAGCAGGAGACATTGCAATCCTGGACTTCATGTTATAGTACAAAATAACAGCGAGAGAAACAGCTTGGTATTAGCCTCCA-ACAGGCATGATGATCACTGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGCTAGGGGAAATATAGccattcaataaataaattct----------gttatCCATATGCAGAATATTGAATCCAAATCTGTATCTCTTTCCAtgtactaaacaaaaataaaaatggatcaaagaactaaatgctaaaacagaaacacttaacccGCTACAAGATAAAATGTGTAAAACCCCTGAAGTCATAGGTGTATG------------AAACAGAACTGCAA----TTATACAATAAATATtaccaagaatcaataaatgtgacCGTATCAAA--------TTTCTGCAGAGCAAACAGACA--ATCagtagaatgaaaagacaacttatagaatggggaaaatttttgctagctattct---tcagacagaggattaatatctagaatgtataa-----taaagaa---------taaaaaatgagat--ccaccataaaataaaagacccaataaaaGTGAGCAAATAAAGTGAATACACGTTTCATGTAAATACAAATGGctagtaaatacatgaagaaatgtttaacatgACTGACtactaaag------aaattaaaacaac

a score=18584
s chr3           120941716 761 + 160039680 GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCA---AGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1  95894463 736 + 233722169 gtgaaactaaaaaaaagta--caaaaaattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACC-------ACATTCA--AAAGAAACgattattaaaaaacaaattcatacaataaggaatgaaaagggtgaaatcactacagattctgtggaaatttagaagatcaccaatacttattttgaaaacttttacttgcataaaataaaaagcatagaaGAAACAGATAGATTTctggaaacatg--aattaccaatgCTGAATCAAGGACATATAAATTGTTAGAGCAACACAAtgtcaattaatgaaattgaa-caataattaaaaacttactgacTTGTTAAAGCCTGGGACATGATAGATTAACAGCtgaattccaaaagaaatttagaaaatatttaacatttggtCTTCTtcaaatctttaatgaaattgaaagagaatcaatgCTTTCTAAGGCATTTATGGGTGGAAGTAATACAATggtaacaaaaccagagaaagatccaaccaaaaaagagaaaaacatgccAATATCTCTAATGCACAGAGAGGCAAAAATCCTTA-TAAAATGCTAGCAAGCAGAAATCATCTAGAAGT--TTAGAgca---------catgaccaagtgggattcgtgCCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGTACTATACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=18093
s chr3           120941719 758 + 160039680 GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACAT---------TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1  95901303 750 + 233722169 gaaactaagaaaatagtacaaataattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACCAC--AttcaactttatcaagaaaagataattaaaaaacaaattcatataataaggaatgaaaagggtgaaatcactacagattctgtggaaattcagaagatcaccaatacctattttgaaaatttttagttgcataaaataaaaagcatggaAGAAACAGATGGATTTCTGGAAACCTG--AATTACCAATGCTGAATCAAGGATATATAAAAGCTTAGAGCAACACAAtgtcaattaatgaaattaaag-aataattaaaaacttactgacTTGTTAAAGCCTGGGATAtgatagattcacagctgaattctataagaaatttggaaaatatttaacaattggTATTCTccaaatctttaatgaaattgaaagagaataaatgCTTTCTAAAGCATTTCTGGATGCAAGTAATACaatgataacaaaaccagagaaagatccaaccaaaa-agagaaaaacatgccAATATGTCTAATGCACCGAGAGGCAAACATCCTTTATAAAATGCTAGCAAGCAGAAATCAGAATATCATCTAGAAGTTTGGAGca---------catgaccaagagggattcatgcCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGCACTACACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=10659
s chr3           120941754 671 + 160039680 GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAA-ATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC-TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA----------------------------TAGTCT--------CCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA----AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATA
s HiC_scaffold_1  95326533 669 + 233722169 gaagaactggttctttgaaaaaat-------------acgCTGTTATC-AAACTTACcagtagaaacagaaaagagactcagatgaaaacaattagaaataaaaacggCAA------ACCAAAACTCTACTGAATCCAGAACATAGTCA----CATCtgtgaaaaattatattccagCAAAAGGTAAAACcttaaaaaatatggaaagatcTTTATATTTGTACAAATTAGCAAAGCTTAGACA--ATAAGACAGAAAATTTTGAATAACGCAAAATTAAGTAGctaaattgaagaagtaataaaactaaaactaaaaaatgtttttaaaaactaacctAGAGAAAGTCCAGCTAAGAA--TCACAGGGCTTGATGAATATATTTCTGAATCCTACAAAAGCTTTATAGATATTAGTTATATCAACATATCTCTTCAAATTGTTCCATGAAGTTGAAA----------------CCATGCACTTTGTAGAAGCCAGCATCTGTCTGATCCTGATACTTAACAATGAccccacaaaaaaggaaaactatattcCAGTCTCCTTACTGAACATGAATGCAAAAATCCTAGAAAATATATTAGCTAACAGAATGAAACACATCATCAAAAACGTCATAGGTCAAGACTAAGAAGGTTTCATGCCAGAGTTGCCAGGATGAGTCAGCATATAAAAA-ccacaaatgtaatacaccaca

a score=64194
s chr3           120941775 2678 + 160039680 AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAA------TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATAC-GAAAATCCATCAATGTAATC----CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacg--aaggaagtgaaagatctgtatgataaaaacttcaagt-ccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaac-tcaattcttcaacgaattagaaggagca-----------------------atttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaa-----tagaat---tgaagacccagaaatgaacccacacacctatggtcacttgatctttga-caagggagccaaaac----catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctt-----tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctc--------agaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctgg-cggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacaca-atcacaaa
s HiC_scaffold_1 101526179 2603 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaa----------gaaatgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggta--taataaaaaaaataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaaccagacaaaga---------------aaaCTGAATGCCAATTTCCTCAAAGAATGTAGATG-GAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaaaa--taggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACCTAGAACAGTCAGGCAAgtgaaagtaataaaaagaatgtgtataggaaaggaagaagtcaaattgttCTTATCTGCAGATGACAGGATCCTCTATATAGACTACCCAAGAAATTCCACCAAAAGTCTCCTACA----ATAACCAAATTTAGAAATGTATCAGAATACAAAATTAgcacaaa-aaatcaataacattcctgtacatcaataatgaattcactgagaaagaaattaggaaagtaACAC------TAAtaacatgaagaaaaattaaatatctaggaattaacctaactcCCCAAAAGTGGAAGATCTCTACT-TGAAAACTaccagtactctgaaaaaggagatcaaagagaacatcagaaaatggaaagatatttcctgTTCCTGTATAGGCAAAACTAATAGTGTCAAATGTGCACTTTCTTCAAagctgatatatagatttaatataatcctaataaaaatatcaatatgtatccctcacagaactagaggaaaaaaaaaatcttaaaattcagaaaacaatcctaaattcatatggaaccagcaGAGACTccgaatagcaaaagcaatcctgggcagcaagaacaaagca-------ggaggcttACAACACTCACCTTCAAGTTACATTaca-agctacagtgataaaaacagcaaggttttggcacaaaaacagacatgtagatCACTGGAACCCACTAGAGTGTATGAAGAC----AACTACAAGCACA-----ATTGCTATTTGAGCTTTGACCAATGGGAAGAAAACATAACATTCTTTggaggaaagataacctctttagcACATGGTACTGAGAAAACCGGCAAT--CCATATGCAAAGCTG------gacctatatctttcaccatgtactaaactgaaattAAAGTAGATCAAag-gctaaatattaaaacagaagcccTAAACCTACTGGAATATacaatagataaaactcttgaagtcattgttgtaggcaaggactttttgAATAGAACACCAGTTTCACAATAAATAACATCAAGagtcaacaaatgagattattatatcaaataaa-----aaagt-------aagcaaCCAAC---------------AAGAGACAACGTACAgtatgggaaaatttttttttgctagctattcc---tcagacagaggacaaaTAT-CAATA-ATATGAaggactcaaaaaaatcagactccccaaaataaaagatcaaattaa------aaaaaatgggaaaCCAAAATAAACAGACACTTCTTA---GAAGTATA---AGTGgccaaaaaatacatgaaaaaaaagttcaacatctctGACCACTAGAGGAATGCAAATCCAAGCTATACTAAGAtcctatcttactccagaaagaacggcaatcaccaagaaatcaaacaataacaaatgctggtggggctg-agTGAAAAAGGAGTCCTTTAACATTGCTGGTGGAAACATGAACTAATACATCCCTTATTGAAATcactatggaaaatatttttaaaaattaagaatagtaATTCTATTTGATCCAGGTAtttcccttctaagtatcttcttaAAAGA----------gctaaaaacatcatat-----------tttttAGCAGCAGAATTCATAATAGCTATTCTTAGGAAGCAGACTATGTATCCATGAATGgatgaagggacaaagaaaatgtatt---tttacaaagTGGAATAATATTCAactttaaagaaggataaatttgagacatttgtaggaaaatggatacgcTTA------AgcgtgttaagtgaaataaatcagaacacAAA

a score=59184
s chr3           120941788 2717 + 160039680 GATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAG-----------TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAA---------------------------------------GGTATTCTACCC--------AAC---------TCATTTT-------ATGAAGCCACT-----------------------------------------ATTACTCTGATACCTAAACCACAGAAAGATCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAA-TCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAA-GACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCA-CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaa--agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaac---ttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac-cgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggct--------------aagatcaaaaattcaggtgacagcagatgctggcgaggatgt-ggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggta----agaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaag---gaactcacacaatatgtactcactgataagtggatactagcccaaaaccta
s HiC_scaffold_1  64169318 2774 + 233722169 GACAAATCTCTAACTgatcttaccaaaaaagaaaagaa--aaggccaaATAAATtcaattacaaatataaaaggcaaaatcacaataaACTTTGCTAAAAGTTAGA---TTGTTAGTAACTTCTCCGAGAACCTGTTCTCTAAAGAAacggagaattcagaagaaaca-aCAGACGCCTACTTTGGTATGAATGACCAAAGCTGAtgcaagaagatataaaaatcatgaATAATCC---ATTAGATAgtgagatgaaagaagaattattttcttcttttttaacctttcaactaagaaaagcccaggtcctgatggattcactgatgaattc------------aggAAAGTTCTACTACTACCAttcctcaaactatttaatgaaattgaaaggaaataagTACACCCTATAAATGAGGTGTATATACAATGGAGGAATACTCTTCTCTAAAGAACAACAGGTTAcagccatttctaggaaaatggatgcactttcagaccataatattaagttaaGTAAATCAGATGGTTGACATTGCCAtcatttcaaaatcagaaaacaacccaaccaaaaaaagagaactttagcctaaactcttcaatgaacATAGACCAAAAAAGTCTTTAACAATCCACTAGCAAGTATCattcaacaaatcatcaaaaaaatcatACATTGTGCCCAGATAGGATTTATCCCAGGGTAGCAGGGATGATCCAACATAGACAAATGAACAGATGTGATACATCACATTAACAGAAGCAAAGGACAAAAGTCGCATGCACAACTCAATTGAAGCAGAAAATGCCAGTGATAAAAtttaacatccattcatgataaaaa--ctgaagaaaacaaacataGAAGAACCATATCTCatc-tgataaaagacatttaTGGCAAACCTACTCTCAAGATCATATTAAATATGGAAAAGCTgaagatttttctatttaaattcagAAGCAAGACAAGGATATTAACTACCATCATTATTGTTCAATATAATTCTTGAAACTATAGCCAGGAGAATCATCCCagagaaagtaataaaaaggCGTATGTGTAATTAAGGAATAAGTCAACTTAACATTATTTGGAGACGACATGACCCTCTACAT-AGAAaccccaaaaattccatcaaaagactcctagacataataaccaaattcagtagcatagagggatacaaaattaacacaaa-aactcagtaatattccTGCACCCCAATGataaactcattgagaaagaaattagag--ataacacttttcacaatatcattgagaaaaattaaaca--caggaATTAATACAACTATGGCAGGGAAAGACCCTTATAGCAAAAATTACAGCACTCTAAAAAAGTagagattgaagaagacatcataaaatggaaatacatctaTGGTTCATagataggcagaatcaatatagtcaaaatggtcatactcctgAAACTGTTAAGTAGATTTATTGAAATCTCAATTAAAACACTAATAGCACTCCTCacaaaactacagaaaacaatcctaaaattcatttggaaccagaagagacctagaatagcaaaagcaatcttgggcAATAAAGACAACGCACAGGGCAACACAATCtc---cttcaagttatactacaaaggtacaatgatgaaaacaaaaca--attaacacaaaaacagaca--tggtTTAATGGCATAGAATATAGGGTGCAGACACAACTCCAGGCACTgtcagctatctgatctttgaccaAAGAGTCAAAAATGGATGCTGGGGGAGAAATAGCCTTTCTAATAATTGGTGATGGTA-AACTGGTATCCATATTGCATAAGATTGAATTTAGATCTGTATCTctcaccacatactaaactaaaataaaaatgtatcaaag--------ataaaactatgaaaacagaaacatttgatGTACTAGacaat----aaaactcttgaagacataggcataggcaagaacTTCCTGAATAGAACCCCAATTTCACAAGAATTAACACTAAGCATCAACAAATTGCATC--ATCAGATTAAAAAGCTGCTGTACAAAAAAGGGAACCATCAGCAGAATGAACACACAATCTACAAAACAGGAAAA----TTTA-CTATTCT---TCAGA----GGACTAACATCTGGAATACACAAAGCAATCAA-AAATTAGATCCCaata---taaaagacccaatcaCAAAATGGG-----TAACTAAATAGACACtccaca---gaagaaaatacaaatggccagtaaatacaCAAAAAGACGTTCAACATttctgatcattagagaaatgcaaattaagacaacac--agATTCtgccttactccagaaagaatagctttcatcaaaaaaaaaaaaaaaaaaaaacactagataACAAATGCAGCTGCAGCTGCAGGGGGGAAAGGAtcacttcttcattgttggtgggaatgtaaactagtacaatcattgTAAAAATCTGTATGGAGTttcttcaaaaaactgaaacaaaattctaAT---TGGTCCAGCTATTgcctttctaggtatctttctaaaag-agttaaagacgttatattacagtgacacatgcataacTATGTTTGTAGTAGCACACTTCAAAATATCTCAGTCTTGGGAGTAAATTAGGCATTCATCAGCAGATGTGTGAGTAAAGATAGTATTGTATTTATTCATAATGAATTATTTCACTGCCATAAGGAAGAATAAACTTACatcatttatagggaaatggatacaacttgaa---ttTATGTTAGgaggaataaatcagacacacaagttgaaatcatgcattgt---ttctcttatatatgaa----aacccaaaatata

a score=35670
s chr3           120941836 1232 + 160039680 ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACAC-ATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaa
s HiC_scaffold_1 211124554 1169 + 233722169 atcaactaaa-caaaaatgaaagaggtgaaataaaaatgaacactgcCAAAATCCAGGAACTTACTGGGAAGTACTCCACAAACCTGTATGTCAAACAACTGGAGAACTCAG----------TATAGtactagatacatataaattgaCAAAACTTAACCAAGAAGCCTTAAAAATCTTGAACAATGCCA---------ATgaaattgcaaaa-----caaaaacctaccaACTGAGAAGAGCCCAGGACCCCAAGGAGTCACAGCTGAATTCTGTAAAAC-TTCAGGGAAGAT---ACtcct--------caaatttttaaatgaaattgagagggaagcagTACATCCAAAATCATTGTAATAAGCCAACGTTATTCTGATCCTAACACCAAACAAGGGTCTAACCAAAA-AAATACTTATAagccaatttctctaatgagcatagatgtaaaaatctttaa-gaaatactggcaaacagagtataaaataattatcaaaaagatcacca----tgatcaagtaggctTTATCCCATGGATGCAGGAAggattcaacacatgcaaatcaataaatgtaattcatcacttaaacagaagcaagaacaaaaacagcatgaccatttcaatagacacagaaaaaacctttgacaaaatccaacatccattcatgataaaaaccctaaagaaaataggtatagaaggtCTGAATTGAAACATGATGAAAGCCTTTTATGACAAACCGACTACCAACATCACAGTAAGTGAGGAAAAGCTGAAAGCTTCCCATTTGAAACCAGGAAC-AAACAAGGATATCTATTATTACCACTCCTGTTCATTATAGTCTTTGAAATATT----AGAGCAACTGggcaagaaaaaataacaaaagggatTCATAGAGGACAGGACAAAGGCCAtacatcattatttgcagaagatatCATCCTTTCT-TATAAGACCCAAAacattccaccaaaagactcctagaattgataactaaattcatcagtgtagcaggatacaaa---aacatacaaaaatcagtaatattcATAGACCCTAATAATGAATTCACTGAAAAAGAAGTTAAGAAAACAAtgtcattcacaatagcatca---aaaattaagtattttggt---------attaaggaagtaaaagacctctacaatgaaaatgtcATCAGaccaaaaaaggaaattgagaaggatatcaaaaaatggaa

a score=22528
s chr3           120941880 880 + 160039680 TGAAGAAATCCAAAACACCA--TCAGATCCTTCTACA-AAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATC---AGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGA---AGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAG--AACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaata
s HiC_scaffold_1  66567775 862 + 233722169 TGAGGGAGACGAAATCACCAATTCAGAACATACTACTTCAAAATTATATCAcaacaaattaacaaattttaaagaaatgcatgGATTCCTAGACGCCTAGTGACTACCAAAACTAGCCCTTGAAGACCAAA---ATATGCTTAACAACTCAGTAACAACCAATGAAATTGATAACATAGTCATTTATTAACTTA-----AATAAAACCCAAAGACATGAtgaatttactgctgaattctacagatCCTTTGAGCATGTTATATCACCAGTATTCCTcaagttcttaaaaaaaaataaaatggtaga-atactcccaaattcatttatgGAAACCAATGTTACCCTGATCCCAAAACTGGATAAAGAACTAACATAAA---AGAACtgtaggccaatctccttaatgaattTAGGAGCAAAAGTCTTCAGCGTGATCC-----AACCAAATACAATGTAGTacattatcaaaaagatcatacatcatggtCAACTaggtttcatcccagagatgcaaggatagttcattatacacaaatcaataaatgtagtacagcATATAAAGAGGagcaaagtgaaaaaaagtaTGATTTTATCAACAGATACAAAAAAGGACTTCAACAAAACCCAACACCCCTTCAGGATAAAAACCCTAAAGCAAACATGTATACAAAGACCACACCTGAATAGGATAAAGGGTATTTATCATAAACTGATatccagaatcatattaaatggtaagaaactaaaactattatgcctcaaa------acaagacaaggatatccactatcacctctTCTATTCAGCATAATACTTgaaa---cagccagagcaatt----agttaagagaaataaaaatgatatatat--gaaaggaaaaactcaaatta

a score=35970
s chr3           120941885 1902 + 160039680 AAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCA-ACAAAACTGGAAAA---CCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAA----GATCAGGAATTCAA------GGCCAA------------------------------------------------------------------------------------------------------------------------TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctc----cttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatct
s HiC_scaffold_1  55056159 1708 + 233722169 AAGTCCAAATCTCATTCAGTATCTTCTAC------CTATCCTTAGATAAGACTCAAAAAGTCTCTATAACAGTTG-------TTGTGAATACATATCGcttaccaaaaccaaaccaaga-agACTTAGTCTTCTAA---------------CTAAA------------------------CTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAACTTTAATGAAACTAAAAGGAAGAGAGGACCC--ACAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaac--------------------------------------aaatcaacaaatcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaac--ataatagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTG---ATTACCACACAGGGAGAC-TGAGTCGGCAC-TCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattct

a score=12579
s chr3           120941902 1391 + 160039680 AGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA--AGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAG------GCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa--actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacct
s HiC_scaffold_1  45014870 1015 + 233722169 AGGTATTTTTGTTGAAAATTGTATGCTAATAAATTGGAAAATCGAGACAGAATAGACAAGTTTCTGGACACATACGACCTACCAAAATTGAAC----ATAAAA------ATCTGAATAGATTAATTT---ATAGGTAACTTAAATCAGCAATTATAAGCCTCCCAA-CATAGAAAACTCAGGAC--------TTTAGTATTGAATTTTACCAAAC------------TTTAACCCCAG-CATGTGCAGATTATTGCATAGAattgaaa-agaaatcatttaa---aactTGTACAATGAAGCCAGTATTACCCTGGTGC------------------------------------TAAGACCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCAGAG---------------------------------------------------------------------TAAATTAGTTATAGAAGGATC---------------ATGTCTCAGCATAATAAAGGCTACATATGACAACCCA-CAGGCAACATCACCCTGAGTGGAAAAATG--GAAAGCACTTCC-CTCAGCCCGGGAACATGGCGAACGTGTTGTCGCTCACTTCTCTTCCA------TAATATGATGGTAAAAATTTCAGCCAGAACAGTTGGACAAAAAAC----ATGATAGACATACAAATAGGCAAGGATGAAATCAGATTGTGGGTGTGTGCAAATGGTATGATTCTTTACACAGGAAAAGCC-AAGGCTCCGTTAGAAGACGACTGGAATTTATAAA----TGCAGCAGAGCAATAGGACACGGCAGTAGCATTCCGAAGCCAGTGGCTTTTCTGTTCACCGGTAATGAAT-TGCTGAGAAATAAAGCACGAACGTAATCCAATTTGTAGTAGCCACAAAAGG---AGAAATTCTAGGAATAAACTTAACCGAGGAAGTGAAAGGTTTCCACAATGAAAACCATAAAATTCTGAAGAAATAAATTGAAGGAGAC----------------ACTTCTCGTCTTTATGGATTAG------------------AATAGTTAAACTGTCCGTAGCA--CTACAGATTCAGTGTGATCCCCATCAAAATATCGAC---ATTCTTCGTAGAACTAGAAAAAGATCCCTG-AAATTCACATCGAACCACAAAAGGGCTCAAAGAGCCAAAGTAGTCTtggaaaaactaacaaaaaagttGAAGGCATTAAAATACCTGATTT

a score=21749
s chr3           120941951 694 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-------------------------GAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
s HiC_scaffold_1 111277613 723 + 233722169 aagtcaaaagactactagatacatatgaattaccaaagttgaatcaagaatatataaaaattctaaataactcaatatcaataAGTGAAATtagagatgtaattaaaaacctatcaacaaagaaaagcccaagccctgatggattcactgttgaattctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcgaagaCTTTATatgactacttctcaaactctttaattaaattgaaagggaagtaacaTTCCCAAATTCCTTCCTGGAGACAAGAATTACTCTGATTCTAAACCTAGAGAAGAACACAACTAATAAAGAGAATTGCATGCTAAATTATCTAATGAACATCAATGTAAATGTCCTCAATAATATACTAGCAAACAGACTGTATCGAACTgtcaaaaagattgtacaccattGCCTAGTGGGATTTATCACAGGGAtacaaggatgattcaacatgc-aatatccataaatgtaatgcatcatattaacagaaacaaggacaaaactTATATGATCAactcaagagatgcagaaaaagtttttaataatgtTCAGCATCCAttcgtgattaaaaaaaaaaaacctacagaaaattggagtagatggtcatTGTTTCAACCTAATAAAAGca--ctatgacaagccaacagccaacatcatactaaatgcacaaaaacttaaaacttttcctctaaaatcatgaacaagaca

a score=32106
s chr3           120942023 2017 + 160039680 CCATATCCCCTAAAGAAATAGAAGCAG-TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGT---GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGA--AGTAGAAGGTA--TTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA-TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtga----ctctaacgaaggaagtgaaa-----gatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggg-aaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaat---gggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaaca-gactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcag--aaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaa
s HiC_scaffold_1 122040671 1899 + 233722169 CTAGATcacaaaaagaattagaaaaaggtTATTATTAAT-----AAGGAGAATAAATCAGGAATCTAAAATCTCTGGCCAAAGAAAATTCtatcaaatatttgaagaaa---tagaacCAATTCt---caaacttttccaaaatatagactaggaaaaaataagtacattttgATTCTTCCTATGGAACCGGCATTACtatga-aatgaaagcaaaaaaaaaggcaTCATA---ATAAAACTATAGAACAATATTCCTTATGAATATCTGTgggaaaattctcaataaaatact-gcagTCTGAATTTACCAGCATATTGAAAACATGATACAGCTTAAACAAGTGGCATTTATTTTTGGAATTCAATGATGGTACAGCATATGAAAATCAGTCAGTGTAATGTGTCCCATTAacagaatgaaggggaaaaaatcacATGAAGATCTTACTTGAGGCAGAAAAGGCattacacaaaatgaaatactcTCTCATAATCA---------ACAGCATAGGAATTGGAAGAGAATTACCTCGACTTAATAAAATCCATACAT-GCAAAATCACAGCAAACATTACATGCACTGAGCCAGGACTGGAAACTTTTCCTCTaacatcagtaaaaaaaaaaatct--ccagtttttattt--cttttcaatatagtactagaagtttTCAAGAGagcaattag------gaaaaaaataaaaagtaccaaGATTGACAAGGAAATAGACA---------CTTTTATAGATCATACGATCTTACAGAAAATT----CTGGCATTTCAAATAA--------TAcagataataaata-----aacaaagtagtAGGATACCAATTCAACACACAAAAACCAGTCGCATttgtaaacaataaaaatgaactacctacaaagaaaattacaagaataatttcattt-------------ataatata-----------cGTAAGATTCactagcaaaagaaataatataatgaaatagtataatgaaaactacaaa-cattgctgaca-aaattttaaaagacataagTAAATGAGAACACAGCTCATGGTCATGAATC--TAGACTTAATAATCTTAAAACATCAGCATTACCCAAAGCAATGTATAGAGT------------TGTCAAAGTTCCAATGAGGTTttatacagaaacagaaaaactcatactcaaattcatttaaaatttcaagagACCCTGAATagtcaaaacaatcttgaaaaaagACAGAG---CTAGAAGATTCGTATTTCCTGATTTTGAAACTTACTATGAAACTTCAGTAATCAACACAGCAAGGTACT------GACAAAGGCAAGCATATTAATTGAGCAAAACAGA--GCCGAGAAATAAACCTTTATATGTATAGTAACATGATTTTTGACAAGT--GTCAAGAAAATTCAATTG-----AGAAAGCTGTTTTGACAAGAGGTGCTGGGAAAAATGACTACCCactcacaaaagaataaaatcagattCTTGCCTAAtaccatatataaaaatttactcAAAATAGACCAAAGACCTAGATGTCAGacccaaaactataaaatttttagaCGAAAGCATGGGTCCAAAGCTTTACAACACTGGGTTT--GGCAATGATTTTTGAGTACAATCCCTAAGGCACaagcaacaaaggaaaaaaacaaaaaatacagagactca--gaaattttaaaact--tgcacATCTAAAGACAATATCAATAGAGTAAAAGGGCAATGCACgtaattaagaaaatatacataa--atcataCATCTGATGAGGAACCGGCATT-----------GAGAACTCCTTAA-----AACTCAGTTGCCataaaacaatccaaataaaATCCTGGACAAGGACTTGCATAGATATTCATCCAAAGAGGACAGACTACTGACCAGAAAGCACggaaaaagatgttcaacattgTTAATCACTAGGGAAACGCAGGGCAAAGCCATAATGAGACACCATAATACACTTATTATGATGGTCACtgttaaaaa

a score=44020
s chr3           120942045 1961 + 160039680 AGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTT----AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCA-----------CAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATC-----------------ATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatgg--ctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaa-----------ctgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagga-gaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatcttt--acctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaa---------------------------atcaaata---------------------accccctt-----------------aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac-cctgagattcc
s HiC_scaffold_1 159886238 1910 + 233722169 AGCAATAATTTAT-GACCCCCAactcaaaaaagtaaacaa--agatatattttattagtttaaa-----aaaaaaactttaaaggagATCTAGTGcc---tctatatagaagaccttCAAACGctttaatgaaatcaaag-ggAAG-----------CAGTCATTCacagaagcaagcattaccctgattccaaaaccagaaaaggacccaaccaaaaaggaaatctACAGTCCAATTCTTCA-atgaaaatagaagcaaaaatcctcaatactaTATTGGCCAACAGAACATAGCAAGTCATTAAAAAGACCCAGTAGATTTTATAGCAAGTCATCATGACCCAGTAGATTTTATTCCAGGGGTGCCAGAATGGTTCAATATATACAAAT-CAGTAGTGTAATGCTCCATACAACCAGCAGcaggaacaaaaatcacatgatcatctcaacagatgcagaaaaaaccttcaacaaaatccaacatccattcataataaaaagcaTGAAGAAAACAGCTAAAGAAGGCATGtatctcaaactgataaaagccatctatgagaa------agCACACATCCTATTAAATGGAAAGAAGCTAAaatctttccctctaaaattGGGAACAAGATGAGGATGTCTGCTATCACC--ACTCATTCAA-ATAGT-CTCAAAACATTAGTTAGAGCaattaggaaagagaaagaaataaaaggaata-----tggatgggaagaagttaaattattattttttgtagacGACATggtcctctacatagaagaccctaaaaact-caCTAAAGtgctcctagaattaataaccaaattcagtagtataacaggatacaaagccaacactcaaaagtcaatagcattgctgtacgccaataataaactcaccaaaagaaaaactagagaaataataccttttacaatagcatcaagaaaaatgaaatactcagcaATTAACccaaccaaggaagtgaaagatctctacaatgaagACTTTAGAAACTTGGAAAAGTAGATCAAAGAGGACctaaaaaaat------------------------------------atactgaaaaaaaagaaagagctttcaaaaaaaaaaagaaag--------------------agctttca---------------gaactagagaaaataatccttaaattcatatggaaccagaagagacctagaatagcaaaagcaattctgggcaacaagggcaaagCAA-------GAGCACCACGATCCTGGACTTCAAACTAAACGACAAAGctgcagtgattaaaaaaaaaaaaacccagcatggtatt--taaaaaaaaataaaaatagacttaTGGAACATAATGAAACAACT-----TCAGGCcactcagct------accttatttttgacaa--------------------agaggaaaaggagcCTTAT-ATCAAAAGGCTCTGGGAAAAGTGGCTACCCACATGATAAGGGTTGAAACTACACCCTTAACtcccaccatgcactaaactaaaattaaaatagatcaaaggtctaaataatagaacagaaacaat----ctgctggaagacaaaaacagataaaattcttgaagacacagacataggcaaagattttctgaacagaGCCCTGGTTacataagaaataataccaaaaatcaacaaatgggatcacatcaag-tTAAAAGCTTCTGAGCAGCAAAGgaaac-------acagtgaagagacaacccacagaataggaaaaaattttgcAAGCGAGTCT---CCAGACAAAGGGTTAATGTCTAGAATAtagtaagaatgaaaaaaaaatggtcccggggatttagctcggaggcataagcacctggtatcaaacatacgcacacacacacaaatggacCTCCCCAAACTTAGATTTAatcaaaaaaatgggcatctgagaagaatagaCGCTGctcagataaagaagtataaatgccaaaaaaatat---gaaaaatgttccacattgctggtcattaaagaaatgcaaattaactcAATGCCTGGTGTTCC

a score=27304
s chr3           120942055 1946 + 160039680 AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG--AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGT--------AAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaa-agaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaac---tcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaact---tcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatt-aaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa-actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacc-cagaaatgaacccacacacc-tatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccat--acttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaa---ctgaacaaagaattctcacctgaggaataccgaatggcagagaagcacc--tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
s HiC_scaffold_1  56820437 1808 + 233722169 AAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaa-ataggaaaatctcCCTACTTC----TATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaagaagctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActcactattaaaaaaaaaaaaaactagaagctTTTTCTCCAA----------------------------------TGACTGTTTTAATACAATTTTAGAAGTTCCAGCCTGGTTAACTag-caagaagacaaaacaaaaagacatctaaattagaaataatggaagaaaaattatCTCTATTAGCAAATGATGCAGTTTTACATGTACAAAACTTCAAAGCTTTCACAAGAAACCTA--AGAACTGGTAAATGAATTCAGC-AGTTCACAGGATATAAAGTAAACATGTTAA--AAATCAGCTGTATTACTGTACACTAACAAAGgataatctgaaaaaaataata-tgacaCAAT-TCATTTAGGgtagcatcaaaaagaataaaatactt--------------------aggtgAAAGACTTATGTGATAAAAAACAGGCAAAATTgttgaa-----aaattaaagagaaagtaaataaatggaaaga-catccatgttcatggattggaagattTAATATTGCTAAAATGCTAGTGTTACT-AAAGTTAGGTACTAGTTTAAAGTAttccttattaaaaattttaa---aatgccaatgagaaactgaaaaatccaTCCCAGAATTCATCTGGAATCTCAAAGCACCTAAGCAGACAAagtaatattgaaaaagaaaaacaaa------gagatttcACATTTACTGCCTTCAAAACTGACTGTAAAACTCCAGAAACCAAAACGGGTTGTTATCgggactcacacacaca-------cagtggaataAGATAGGAACCCATAGAAAAGCATTCATGTACTGTACAGTTAACTTACTTTAgataaaaggg-------------------gaaaggaaactATGTCAGCAAATGTTGCTGGGAAAACTGATCAT--TCACCTACAAAACGACAAATTGACCTGTCACCTTACAACACTGCAACAA--TTaattcaaaatagataaaaaaaatctaaatgcaacagataaaactacattttttataataaaataaggtGAGAAAACTTCATGAGTTTGG------------ATT-----------TGGCAATGATTTATTTCCTACGATGTCAAAatcacacaagagaaaaatttactACATCAAACTTAGCAATCTCTGCACATTAAAGGGTGCTATC-ATCAGACTAAACATGCAAccacaaaatagaagaaaatatttgcaaatt----gtcTAGTAAGGGATGAACATCTAGAATGTA----------AAATCGCTAcaactcaaaacaaaagaaaacccaagTTAAAGATGGG---CAGAGtgcttgaatagacatttct----taaaGAAGACAGACTAGAGGTCAGTTATCAATGAGAAGATCCTAGATGTTGCTAATCATTAAGGGAATACAAATCCTGACCACCATGAG

a score=30599
s chr3           120942098 1072 + 160039680 GTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCA--GTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCAC----------------------------TATTACTCTGATACCTAAACCACAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGC---TGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcg-acaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatc---------tcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaa-attccaac
s HiC_scaffold_1 100235787 1071 + 233722169 gtacagACCTCTACAAAAATTTTAGAGAAGACCTGATGccattattttttaca----ttttcctgaaATCAAAAGGGGAGGAGTACTTTGAAAGTCAtgtcctggaagcaagcattactcagATACCAAAGATACCAAGTATTACccagataccaaaaccagaaaaaggaccCAACCATAA--AAGAACTGTGGGCCAGTCTCTTTAATgagcataaatgcaaaaatcctcaataagatact-gcaaacagaatgcaacaagtcatcaaaa-agttatacaccatgaccaaatagtATTTGTTCCACGGATACAAGGATAATTCAGtttgtgcaaatcaataaatata--ccaCAATACGAGCAAA------GACAAAA-CCATGTGatgatctcaatagatgcagaaaaagcatttgacagaattcaacatccattcatgataaaaactctaaagAAAGTTGGAATAAAAGATCTTTTTCTCAATCAGATAAAAGTCATCTCTAACAAGCTATCAACCATCATTATAGTAAATGGAGAAAAGCTGAAACCTTTCATGGTACAATCAGGAATAAGAGAAGGATGGTGCCCACAGTTGCCAGTATTGTTCAGTACAGTTTTGGAAACATAAGCTGGAGTGTttagcatagtgaaaaaaaagaaaaataatacagacagggaggtaaatatttaaattatcattttttactAATGACATGATCCTGTACATAAAATACCCAAAAAATTCTACCCAAAGACTTGTAGAATTAATAACCACAATTggta--------ggatacaaaatcaacactcaaaaatc-atagCGTTCTTGTACACCAATAAcaaa----ccaagagagaaattacagaagcACCATGGTTCACAGTAG---CAAGAAAAATTGAATACTTACatattaacctaaccaaggaagtgagcaaattttacaatgaaaactatagtactcttaaaaaaaaaagagagagagattgaaaagaaatcagaaaatagaaagctaTTCCATGTTCCTGGGTAGGCAAAGCC--CATAGTGAAAGTGGCCACATT-----------TatgtagatttaatgcagtcccactCAAATATGCCAAC

a score=27417
s chr3           120942113 1030 + 160039680 AGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCC--AATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagatt
s HiC_scaffold_1   2142831  947 + 233722169 agaaatttagagaagatctaacaccaTCACTCttcagactctttaatgaaattgaaagaaaaca-atactcccCTAGTCATTCC-TAGGACCAAGATTCCCCTGATATCAAATATAGAGAAggatccaatcaaaaaaaaaaa----------------------aaaaaaaaaaaaaaaa-----aaaaaaa-------------aagccacacacCTAT-AGGTCAATT-----TCCtgatgaa-------------catagacacaaagatggttcaacatatgaaagtcaataaatgtaatacaccatatcaacacaACCAAGGGCAAAAACAACATGATCATTTCAGTAGACACAGGAAAAGCATTTGACCAAGtctaacacccattcatgataaaaattctgaagataattggaatagatggtctttttttttcaacCTGATGAAGTCTATCTGtggcaaaccaacagctaacatcatactaaattgtCAGAATCAGAAaactttcactctgaaatcaaggacaagataaagatgtccactgtcatgACTTCAATTTGCTAAATTTCTAgcaatactagccagagtaattaaacaagagaaagaaataaaagggatataggtaggaaatgaagaagttaacttataattatttgtggatgacatgtta--ctctacaAGAAGATTCAAAAACTCTA---------CTCTAGATCTATTAATCAATTTCAGTCATATAGCTGAGAACaaaattaacactcaaaaatcaacaacatTCTTGTAGATAAATAACAAGCTCact--gaaaaaaactaaagaaaccaTACATTTCACAACAGCATAAAA----ATGCAATAGTTAGAaattaatctaatgaaggaagtaaaa------tatattgaaaactacagtactctaaaaccagaaatcaaagaggatatgagaaactgaaacgatatcct-tgttcttgggtaggaagaacaaatatagtgaaagtggacatactttcaaaattattaaacaaact

a score=39797
s chr3           120942118 2333 + 160039680 TTCAAAGAAGATCTAACTCCA---GTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC--CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaat-aatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg------------tatagagacagacaa-----------------------------------------------------gtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctg---aacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga------cctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtac----------------atctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcaca
s HiC_scaffold_1  71824309 2160 + 233722169 TTTATAGACAATATAATGCTACAGGTTCTA---AAACTctttaacaaaattataaaagatgCAATACTCTCAAATTCACTTCTAGAGACAAATATTATCATGATATCAATACCAGGAAGAGAtctacaaccaaaaaagagatcTACAGGCCAATGCTCCtaatgaacatcaatgcaaaattcctcaataaaatactagc-aaacaaatgcagcaaatcatctgGAAGACTACACACCATGACAATGAAGGATTCATTCCAGAGATACAGGGCTGGTTCAGCATATGCATATTGGTAAATACAAAGAACCATATTAACAGACTCAAGGACAAAATGtaacacgatcatctcaatagatacagaaaaatca-tCACCAAAGACCAAGAttgattcatgataaaaatgctaTGGAACactggaacagatggtctttatctcagtctgataaaagccatctatgacaaaccaacagtcaacaccATACTAAATTTC-AAAGCcagaaagctttcactccaaaactaggcacaaaacaaggacatCCA-TTACAACTGAACTTATTGAAAtggttctggaaactttagcaagaggattgaaacaaaagaaagaaataaaaggaacaaggacAGTAAAGGAAAGggttaaatgatcattatttgtggatgatcTACTTCTCTACATAGAAAATACCCAAAACTATATCACACCATtggtagatttaataaccaaattcagttga-TGACAGTATATAAGGGTAACAATGAAAAATCATTGGTTTTCCAGTGCATAAATAACCAATTAACAGATAGA-AAATTATAGacataacacctttcacaatagcagcCCCTCAAAATGAACTATATAG----Gactcaatctaacaaagtaaaatatttttacattgaaaactt---gTATTTGAAAAATGAGATCAAAGTGGATTTTAGAAAATGG--AGATACCCATTTTTCTTGGGTAGGAAG--TCAGTACAGTGAAAATTGTCAGGCTTCTAAAATTGCTATGCTGTTTtgatgcaattctgatcaaaatatcagtaccatatctcaaagaattatagaaaacaattctaaaatatattcagAACTAAAACAGAC---------CAAAAGCAATGCT-----GTAAAGGTAAATCGGACTGCATCATGATCCCTGACTAAA------ATTACAcaatggtactggcaaaaagaagaagaaaaaggaggaggaggagaaatacaaacaaacaaacaacaacaacaacaaaaaaaaaccaagcaaataaaaaatgcaaCTGAGGACTGAGGATTAATGAAactgattagaagatgtagaaacaactccagacagaGTTAGTCAACATATCTTCAACAAAAGAGCCAAACACgatcactgaaagaaagacagattCTCTAATGAGTGGTGCTGGCAAAACTAGTTTTCCATATTCTGAA-----------GGTTAAAACTT-TCACCTTGCACTCAGCTACAATTTAAGTGGGTCAA----------ATACATACAGAAATCTTACATTTGCTGGAAGATAGAAGAGGTAGAACTCTTTAAAACAGAGGTGtatgcaaagactttatgaaaaaaaaaaaaacaatcacacaaaaaacatcacaaagaattaagaattgagatctcatcttaataaaact------gttttacacagcaaaagaaagcaccaacGGGGTGAAGAGACAACTCATGGTGTGTGAAAGAGT-TTTGCTCAGTCTTCTTCACACAGAGGACTAGCATCAAGaatgtaaaatgaattttaaaaagcagaactc------ccaaataa----------------------------------------------------------------------------------------------------------------------------------------------------------------------ataaattcag---------------tgcaAAAATGTGTACGAGAAATGAGACTTTCACCATTGTTGGTAGGAACacagactagtgcaacca--ctgaaAATCTgcgtagagattcctcaaaaacctaaaactagaaattccatttgatccatcCATGCCACTTCTTGGCACTTTtgctaaagaaat-----------aaaagcac-taCGCAGATCTATTTTTATAGTAGCATAGTTTGTACtacataaatcttggaaacaacccaaatgaccatCAGTGGGCGAATTTATAAAGAacttgttgagctctttttttttttttttttttgatagtgaagtactactctgc-attaagaaggataaactggagacatttctagtcaaacggatgcaccttgaaaccacacttttaaattagataatttggacaca

a score=26579
s chr3           120942126 1349 + 160039680 AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGAT----------------GCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA--CTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactccta-aacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaagg----agcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgt-----gataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagg--------gagccaaaaccatccagtggaagaaagacagca-------ttttcaacaattggt
s HiC_scaffold_1  22270377 1298 + 233722169 AGATCTAATACCAATCCTCCTCAAACTCTtgcatgaaattgaaagggacagAGAGCTGCCAAACTCATTTCATAAAGGCAGCACGATCATAATAGTAAAGCCAGACAAAGATTCAACAACAA-AGAAAGCTGTAGGCCAGTGTCTTTGATGAACATAGATCCTTAAGGAAATTGTGGCAAAAATCCTTAAGGAAATAGTGGCAAACAGAAGGCAATAGATCATTAAAAAGGTCACACATGATAACTATGTTAGCTTCTTCCCAGGGACGCAAAGACAGTGACACAAATGTAACT-GATAAATGTAACACATTGCATAAAGACAATGATGGGTCAAAATCACAAGATCATCTaaatagttgcagaaaaagcctttaaaaaagctcattat---tttatgattaaaaaccaaagcaaaataaatgcagaaagaccttatctcaaactgataaaagtcACTTATGACAAGCCCACAG--------ATACTAAAAGCATAAAACCTGaaattattctctttaaaatagggAAAGTGAGAGAAGGTTGTTTACTCTACCCACTTCTCTTCAATAGAGTACTCAAACT-TCAGCCAcagcaatcaggcaagaaaaagaaat-aaaaggatataaataggaaaggaaaaagtcaaactaTCTTTTTATTCAGGTAAAATGATCCTTTGTGTAAAATCTCCCACAA----CAGCAGAAGGATCTtgcaactaaataaataaattcagcaacgcAGC-----ATGAAATT--CCATAACA------------TTCTGTTCATCAGTAAT-GATATACTCAGAA----------TACATTATCCCATTCGGGATACTTTCAAA----GTTAGATGCCTAGGAATCAACCTTACCAAAGAGTTAAAACAATTCT-TAACGAAAA-TTagagactctgaagaaataaattgaagatgatgtTACAAAATGGAAATGCATCCCCTGTTC-----------------------CAGATAAGTCT-TATTaccaaaaaaaatctattgatttAATTCAATTTCTACAAAAGTATCAATAATAGCCTTCACAATACTagaaagaaaaagcaatcctaaaatgcatatagaaccagaagagatctagaatggCTGAAACAGTCTTGAACAAAAAGAGCAAAGTAGGAGGCATTACAAGCTTAGATTTtaagttatataacaaaactatggtttaaaaaaagaaacagcatgttactgg--------caaaaAAGTAAGTCAAAGAAACcaaacagaagatacagaaa-acaCTCGTATACTTTTAGTTATCTGATCTTTCACAAAGGGCATAATGACACAGAACCATT------ATTGAAAACAGCATGAGGATTTTTCAAATattagt

a score=9514
s chr3           120942167 352 + 160039680 AAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACC--ACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA-TTCATGATAAAAGTTCT
s HiC_scaffold_1 185532531 319 + 233722169 AAGTAGGAG-----CCTTCCAACTCATTT-acaaagc--------------taaataaacctgACAAAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAACTG--------------GGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATTTCATAGAAAAATCtct

a score=5629
s chr3           120942178 354 + 160039680 ATTCTACCCAACTCAT-----TTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGA
s HiC_scaffold_1  10107596 338 + 233722169 atTCTTCACAATCCATACAATTGTACAAGGTCAATATAAACATTATACCATAAAGAGATAGAAATATCATAAGAACAATAACATGTTTGCTCATATCATTT-TGAACACAGTTATAAAATTTC--AGTACACTGCCAGAAAACTGAatctaaaaacatat-aaaatgattttacaCAATGACAAAATAGAGTACAT-CCATCAATAATGAATTGGTTCAACACCTGCAAATAAAT-ATTGCAAT---TTACATCAATTAA------------AACCAGATGATAATTTCAATTGATATAGAAAAGGCATTTGATAAATTTCAATACCCTTTTATGGTGAAAATCCTTGATGACTCAAAA

a score=6299
s chr3           120942187 318 + 160039680 AACTCATTTTATGA----AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTC
s HiC_scaffold_1 159471395 289 + 233722169 AACCCACTATATGAGCATAACCtctattaaa---------aaatgacaaaaacagcactctaaaa-ataaaactgcagggcaatctccctaatgaatttAGACACAAAACACT--------------GCAAAATGGACCCAGGA-TgtattaaaagaatgaaattccaTGAACAAAATGGGTTCCTTCCAGG---------ATAGTTTAATATTAGGAGATCTACTAATATAATTCATCACATCAGCAGATCAAAGGAAGAAAACCATATGGCCATCCGGGTACATAATGAAAAGacatttgttaaaaattcatCATCTTTTC

a score=15759
s chr3           120942187 735 + 160039680 AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCAT-GATAAAAGTTCTGGAAAGATCAGGAATTCAAG--------GCCAAT----------------ACCTAAACATGAT---------AAAAGCAATCTACAGCAAACCAGTAGCCAACATC-------AAAGTAAATGGAGAGAAGC------------------------TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagta-------tatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggccttt-------ctctacacaaagaataaacaggctgagaaa
s HiC_scaffold_1  20135648 797 + 233722169 AACTCATTTTATGAGGCTATCATCACCTGGATTCCATTATCAGACAAGGACTTTATAAGAG--GAAAATTGCTGGCCAACGTCCTTGATAAACAGACATGCAAAA-TCCTTATTAAAATACCAGCAAACTGAATTCAGAAGCACATTCAAAAAATTATTGATCGTGATAAAATGGGATTTATCCTA--GATACAAAAATGGCTCTACATATACAAATCAACAAATG--GTACACCATATTAATGAAATGaaggataaaaatcacacaataat-taaagagatggagggaaataATTTGTCAAAATGTAACATCTTTTCACAAATAGAAACTTTCAACAATTTAAGTATAGAAGAAATGTATACCACTGAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAGTTGAAAATTTTTGCAGtaaggtcaggaacaagacaag--tgcCCACTCTTGCCATATCTATTTAACATGGAACTGGAAGTTCCAGCTACAatgattagacaagagaaaggaataaatgGCATCTTAAGTGGAAAGCATGAGATTAAATTGTTTCTGCTTACAGACAACGTGTTCTTAGAAAACTTGCATAAGAAACTTAAAGGGCTCTACCAAacaattctt-----taataaatgaattcagtataGTTGCAGGATACAAAACTAATGCAA--AAATCAGTTACATTTTCACATACTCACCAAGAAGTAAAAACCaattaataaa

a score=7294
s chr3           120942189 244 + 160039680 CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA
s HiC_scaffold_1  33701942 231 + 233722169 cttattttataaagccatcattatcctgataccaaagtCA--GAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAATATT------------AGCAAATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATGCCAATAAGTAAATATGAAATGTCACATCAGCAGA

a score=13145
s chr3           120942199 421 + 160039680 GAAGCCACTATTACTCT-GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA---TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
s HiC_scaffold_1 134234716 413 + 233722169 GAAGCTATCATTACTCTTGAttccagaaacagaaaagaacccAGTGACAAAAGCAAACttcaggccaatctctttaataaacacaga----aaaatctaCATAGACATTA--GCAAgcagaatacaacaaatcatttaa---aagatatattatgaGCAAGTAGGCTTCATTCCAAGGATAATGTGATGGTTCAGTTTATGCAAATCAGTAAAAGTAATACATGACGTAAGCATAAGTAGGGGC-AAAATCACATAGTCATCTCAATTAATGCAGAGAAAGATTTTGACAGTAGCAAACACCCATTCAGAATGAACATct--gaaagaaatagatttaaaaaggaattttatataaatctgataaaaaccacTTATAACTAATCGATGGCCAATATCATAGTAAAtggaaagaggcagaaaaaaa

a score=42306
s chr3           120942203 1588 + 160039680 CCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA----TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcacca-----------tgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg-------------------------tatagagacagacaagtggaccaatggaatagaa-------ttgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagat----atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttac
s HiC_scaffold_1 232195281 1587 + 233722169 ctagtattACTGTGAttccaaaaccaaagaagaatTCAACCCAAAAAGCAAATTAaaggccaatatccctaatgaatatagacacAAAAGTCTTCAAAAAGACACTGGCAAGGAGAATACAGCAAACCATTAAGAAGACTAT-------GGCCACGTAGGATTCATCCTGGGGATTCAGGGA-GTTGCAGCATACACAAGTCAGTAAGTGTAATACAGCAAAGTAAGGGCGCCAAGGACAAAACCCAGCTGACCACCTCCGTAGATGCAGAACAGGCATCTGACAAAGTCCAAGCCCcgctcatgataaaaacccaagAGAACACTGGACCTGACGGTCAGTCTCTATCTCAAAGGGATGaaa-ccatctgtgacaaaccaacaggtaACATTATATTAGAT-GATCAAAACTGAAAGATtgtattctaaaatcaggaagaagactgggatgtccactatcaccactcctattcaacacagttctggaaacactagccagagcaattaggaaagagaaatgaacaaaaggaatatggataggaaaggaaaaagttaaattatcattgtttgcagattacatgctactctacatagaagaccccaaaaacgcTATCGAAAGACTTTTAGATTAAATAACCAGTT------ACATAACTGGATAGAAAGtgagcactcaaaaatcaacagcatttctgtacacaaatatcaaattcactgag--agaaattaggaaaataatacttATCATAATAGCATTAAAAAGtgt--aatatttaggaatcaatctaacaaaggaaataaatgatcttcatattaaaaattacagtactctgaaaacgGAAATTAACAAGGATATGacaaaatggagagatatccattgctcttgagtaggaagaaccaacatagtgaaaatgatcatactttcaaaattattatacagatttaatacaattccaatcaaaataccactagcatacttc-----cctagagaaaacatttctaaaatttatttag------agaagacctagaataacaaaaacaatt-tgaataacaaaggcaa----ggtagaggCATCACAAAGCCTGACTTCCTGATTTGAAAGTATATTACAGAGTTCACATGATAAAAACAGTACGGtacttgcaaaacaaaacaaaacagaaccgaacaaaaaaacaaacctaagGCTCATTGGAACACAAACAGCTCCAGAAGATGcggaaacaactccaaacacattcagccactt-atctttga---------caaacatgttcactagaagaaagacagcctctttaataaatggtgctagaaacaCTGAAttgccacatgctgaagactaaaactggatCT-TGTCTTTTGCCAGgcactaaagtaaaatcaaaatgcatcaaagatctacgtattgaaacagaaacactcaacCTCCTGGAAGGGCGActaggcagaactcttgaagcTACTGATTGGTGTAGACAAAGATTTTATG-GCAAACCCCCAATCACACAGGAGCTATCACCATCAATCAATGCCTGGG-CTTCACCAtagtaaaaagcttttgcacagcaagagaaaccacc---aagtGACGAGACAGCCCCACAATGTGGGAACAAACTTTTGC

a score=36333
s chr3           120942215 2279 + 160039680 TGATACCTAAACCACAGAA-AGATCCAACAAAGATAGA--GAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT---CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat----taactca--aacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcaga-agatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaa----------------tctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaac--ctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatc-gatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaac------------agcaat-------------------------------------ggcttgtgctgt-----aagatcgagaattg--acaaatgggacct----------aat-------gaaactccaaagtttctgcaagg--------------caaaagacac-----------------------------------tgtctataagacaaaaagaacac------------------------------caacagac--------------tgggaaagg------------------------------------atctttacc--------tatc--------------------------------------------------------------ctaaatcagataggggactaatatc--------caacatatataaagaactcaagaaggtggacctcagaaaatcaaataacc----------------------------------cccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgc-tggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactacc----ggaggatccagcaatacctctcctgggcatatatccagaaga---agccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagcca-----gaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactag
s HiC_scaffold_1 107509862 2501 + 233722169 TGATTCTCAAAAGACAtaataagaacaacaaaaacaaacaaaaaacgagACCAATACCTCTAGTGAACATgggtgcaaaaattctcaacaaaatactag-gaAATGAatttaatagtgtatcaaaaaGATCATCCATCATGGTCAAGCTGGTTTCATCCCAGAGGTACAAGGATAACTGAGCACACACAAGTCCAAAAATATAATAGATTACATTAAcagaatgaataataaaaatcactttattatctttatattcAATGCAGGAAAAGCATgcaacaaaattcaacatc---tcctgatAAAAAACCCTGAGCAAATTAGGTGTAATAAAATCATGCCTCAACGTG---AAGGCTTTGTATGACAAACTTA-AGCCAACAT---ATTGAATGACgtaaagttgaaaatatttcttgtacTATCAGAAACAAGAGAAGTGTGTATAGTCTCTCTACTTAtgttcaatatagtactagaag---tagcTGGAGCAAttggataataaaa----ataaaaaaaacataaataggaAAGGAGGAACTGAAATCATCCCTCTTTGCAAATGATGTG--AGTTTGTAAACAGAAACCTATGATCTCCACCAATAA-----TAGAACTGATAAAC----TCAGTAGAAAAGCAGTATAAAAAATTTAGTAGCTTATTGATATGTCAACAGTTTT-----------------------CTGAGAGAAA---CGGGAAAGCAAT-CCATTTACACTAgctacaa--aaagtaaaatattt----atgacta-aataaaggaaatgaataaCCTCCATGatgaaaattacataattttgaTGATGG--attgaagacacacacacacaaaagtaaagaTTTCTCATGTTCCTAGATGGATTGAAAGAATATTGATAAAGTGCCcctgctgcaaaaaaaaaaaaaaaaaagaaaaagtttacaaTCTCAATTTAATCCCTAGcaaaataccaatgacattcttcacaaAGCTAGgaaaaacatccta-aaattcatatggaaacacaaaagtTC-CTCATAGCCAAAGC-AGTCTTgagaaaaaaccaacaaaactagAGACATCACAGTACCTGATTCCAAAACATACTACAGAGCCATAGTAACCCCAACAATATGATTCTGGCGTA---AGAGGCATATAGGCCAATGGAACTGAATAGA--GCACAGAAACagaggaac-------------------------caagaaaaaaaaaatcac----tggagaAAGAACAGCCtcttcaacaaatgatgctgggaaaa-----tgaTATC-CATATACAGATTAAAATCTGATCCCTATCTCTTACTCTGTggaaaagtcaactcaaaatgaatcaaagacctataAGAAAGACCTGAA--ACTGAAactc-tagaagaaaatatagggatAACACTTCAAAACAATGGTATAGGTAATGATTTTCTGGATAGAACCCCCAAAACACAGGaaattgatagaattttcagcgtggaagggaaccatctgataggattttggcgtGGCTAAAAAGGGAGATATGAAATAGaagagacctttattttaagaatgtggggagagactctATGACCCTCCCAGGGTCTGGCATTATCTCcaccagacacgtggtgtgggggcatgtGGCTTAGGTTTGgagtggtgcctaaggggcattagtaatgcacaggtagcccattggtattcatttccgcgccacaggtaaattgcctaggggcgggaaaggtgacctcaGGATAGGGcctcttggttctgcctccaaggctttaccagctacagtgtcccatctggggcaaaatcctttcagaaatGAGCAAGAAATTTGGtaatattaaactaaaaaaactacaccaaaaaggaaacaatcaacagagttaacagaaaatgcacacaactggagaaaatatttgtcaattATTCAAATGACAAAAAGTTATCCAGAATATACAGCAATTCAAAATGCAATTATAAAATGGGACAATGAtctgaacagatacttctcaaataaagaaatataaatagccaACAAATACATGACAAAAGGCTCAATATCATTAGCTATCAGAGAAATTCGAATCAAAACTACATAGAGATAACATCTCACCTAAACTAGAATGGctatagttaaaaa------tattaacaaattcatGATGAAGA-----AGATAAAGGAATTCttatacattgttggtgggaatgtaaactagtatagcAACTATGGAGAACAG---------TTCTCAAATATCTAAAAGTAGCTTTATCATATAGATGATCCAAATATCTTACTTCTGGATATTTAGCCCAAGGACATAAAATCAGCATAGCAAAGAGACACCTGCACACTTATGTTTATTATGGTACTATTCACAACAGCTAATACTGTATATGGAGTCAGCCTAAttgcccatcagcagatgaac--aTAAAAAATATGTAGT-TTTATGCACAATGAAGTATT-TTCAGCCAT---AatgaatgaaattctgtcatctgCAGCAAAGTAGATTGAACCAGAGATtaatatgttaagtgaaaaaaagcaGACCCAGAAAGACAAGTACTACGTGAGCTGTTTCAtatgtggaagctag

a score=12283
s chr3           120942230 1763 + 160039680 AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTC----CAGGGATGCAG-------GGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATA---CCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtacctt--ttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggata-------gcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcat--------ggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatc---atgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagt-ggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtg-ctgtaagatcgagaattgacaaatgggacct-------aatgaaac---tccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctc-agaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgagg-aataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaaca
s HiC_scaffold_1 124838658 1529 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaa--atttacaaaataatggcaaatcaaattcagtttaatgttaaa---ataatacatcatgaccaaattgCATTAGCTCTGAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAATCTTG--aactttttttctattattataaaCAAAGTAAACATATCAAC--TCTTATTACTCTAATTTAACATCATATTGAAATT-----------CAATaagatgagaaaaaga-ataaaaggcatAGATActgaaaaggaacaaataaa------actATTCAGAGATTACATGATTGCTCATGTA---GACTCTGAA--------------------------------------CGGGAAAA--------------------------------------------TACATTAAAgataaa--------------------------------------------------------------------------tctaataaaatatgtgCAATATTTGCATACTAAAACCTAAATATTATaggggaaataaaatatttaaaat------aaaaagaaaaata-catgcacTTGTAAATTGGAAGACTCAATGTTGTTGACATCTAAATTTTTTCCAGGTTGATCTACACAGTCAATATGAATCCAATGAAAATCCCAG--CAGGCCTTTAGTAGAGCCCAATGAACTGATgaaaaaat------gtataagaaaaattgaaggaaataCAACTGCTAAAGCAATTTTTAGAAAGAGCAAAA---TTGGAGGACT---TATACTCA--CAAGACATTTAC--AAGAGTTATCAGG----AAACCACATACTCAGAGAGTGATGTTATAGTG--AAACAAATGATACAATGATA---AATGGAAAACTCAGAAAC--------------------------------------AGGTCAAAATAATTTCATGGTGGCAGGGTAATCTATTATACAAATGGTACTG---CAGCAGTTTTCTATCCATATGCAACAAAATTTATCTCCATACATAAATTAAAttatacacaaaaattaattgGAAATTGATC-ATGACCTAAATGTTAAACCTGAAAGCTTAAAAATTCTGGAAGAAAACATAGAAGAGAAACCTTGTGACAGTGAG--TTAGGTAATATTTATTAGGCAGAGTA--AAAGATTTACGACtcataaatgaaaaattgttacatggaatttttttcaaaattaaacacttcTTATATTT--------------ACACTTTTAAGAAAGtgtaaatacaaaatattaactagatgaaaatattttcaaaatatatgtcaAGTA-AAGACTGCTTTTGAAAATATGTGAAAGACTTTCATATTTCAATTACAAGGAAAAGTAAGAACCCAATTTAAAACtaagcaatatattttta-aaagaagtttcaTCAAATTCAATATATTACtggaaaaaagcatttgaaacaatGCTCAACAACATTAACAACTAGAGAAATGTATGTTAAAACA

a score=8809
s chr3           120942245 667 + 160039680 AGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATG---ATAAAAGCAATCTACAGCAAACCAGTAG--CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACT--TTCTCCCtaccttttcaacatagtacttgaagtattagccagagc---aattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaaca
s HiC_scaffold_1 173578727 609 + 233722169 agacagaatgtagcaaatcagtAGCCCTTAGGAACATAAATATACAAATCCTCTACAAAAGTTTAGCAACCTAAATCTCATGATAAGTAAGAAAAACAATATGTTTTAATGAAGTGGGGCTCGTCCCAGGGGTGCAACTCTGGTTCGGCATTAGAAAATCAAACAAGGC-ACCCACCCTACTAACAGACTAAAGGAGAAA----------------------CTGCAGAAAGATTCTTTAACAAAATGCAAAATCCTTTTTTGATAAGAATTATCAACAAACTAGGAAGTGAAGG-GAGCTTCTTGACTTGGGCATAAAATC---------CCAGGCAGTGGGATCACCTTGATAGTAA-------------GGACCTACGTCCTTTCCTATGAGGG--------CGGGAGCACACTTGTCATCTCTGACCTCTAGCTGTCGTA-----------AGTCAGAAACTGAAATaggcaaggaaaagaaat-aaaggcatACGGAGtggaaaggaggaaataaagctGCTCTTACTCTTAGGTAATACGATCATTTACACAGAAACTTCAAAGATCTACACCAAAG--CAACTAGGACCGATAAGTAAGTTCAACAGGGTCTCAGGATACAGATTCAGTATAAAAACATCAATTGTGTTTCTCTATACTAGCAGTGAACA

a score=38228
s chr3           120942251 2255 + 160039680 AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG-CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAA--------------------GCAATCCCA--------------------------------------------------------------CTAAAA----------------------------TCAGGGACTAGAC---------AAGGCTGCCCACTTTCTCCCta---------------------------ccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggataca-aattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaa-caggctgagaa----agaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaag-gataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaat-tgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatctttgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatact-tatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaaga----tcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaacaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctca-gaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatgg-ctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactagcccaaaacctag
s HiC_scaffold_1 123227521 2221 + 233722169 aaaactacaggacaatttatttaatgaacatagatgcagaaattcTCAATAAGAGTCTGGCAAACAGAGTGCAACAACTCATAAAAAAGATCAGAC-TTAAGACCAAGAAGTCTTTATCCCAGGAATGTATGAGTGGTTCATCATACACAAACCAATACATATAATGCACTACATAAAAAGaggcaacaacaaaaatcac---atcatctcaatagacgaaaaaaaaagtcttcaatataat-------ctgttcatgataaaattctgaaagaaaagagGTATGGAAAGGCCttatc--aatctgataaaagttattTAGTACAGACCTCCTG-CAACATCATGCTCAATGAAGGGAAACTAGCAAGGCCTGGtgctgcatgtctgtaatcccaactctcAGTAGTCTAATGCCCAAGGTTCACCGTACATTCGAGGCCGTGCTGAGTTGCCTTACTTAAAACCATTCTGAACTATGTAGCAGCTCtctgtcaaaaaataaacaaatagggGAAAACTGAAAGCTTGTCCTCAAAAACCAGAAATAAGTCCAATACTGAACTTCTGTCAGTATAGTACTTGAA--ACTACCTACAGCAATCAAGCAAGAGA--------AAAGTGATCcataataggaaaggaaaaaatc--aacTTCCCCTTCCACATA----------------AAGAATAGCCC----AACTCCACATCATGAATCCTAGAACtgataaa----ttcagcaaggtaaTAGGACACCAAATTATGTGAA--AAATCAATAGTGCTTAGATTCACCAATAGTGAGTCcatctgaagaaaacaaaaaatagaaaaacagtacCATGC-AGctagcttcaagaaaaattaaatacttaggaa-----ctaGCAAAGAAAGTGAAAG-CATATGTAACAAAAACTGTAAG------------AGGATTGAAGAGGAcattgaaaaactgaaagataactt-tgttcctggataggcagaaccaatgttTTCAAAGTGTCCATGCTACCAAAAGCAGTGTA-----TTAATACAGTTGCAATAAAAGTACTACCAACATTCTttacagaacttaaaaaa--aaatgtaaaatttatatggaaccagaagagccccagaatagcaaaaaatcaccctaggcaacaaaagcaaagcaagaggtaTAACAACCTTGGATTTTAAACtatattacaaaactacaaaaaataaaaacaacattgtACTGACATGAACACAGACATATgaaccaatggaacagaatagaggatgcagaa---aaatCAGGCACAGTCAACTATCTGATCTTtgagaaaggggccaaa--catgtattGCAGAAAAAATTGCCTCACTACAAAATGTTTCTGGGAAAACTAGCTATACATAATCAGAAGATTG------AATCTATACCATGTCTCT---CACTAGAGTCTA----AAAgggatcaaaaatatttaaatacaa------atactT-AATTTACTGA-GAGATGACTGGTAAAACTCTT---GACATGG--ACAGGTAAAGTCTTTCTGGACAGAATCTCAATTGC-------ATAAGAAATCCCAAAAATCAACCAATGAGA-TTGTCAGTTTTAAAAAGCTGCTGTCCAGTGAAGGA-AATACCCAGAAGA-ATGAAGAGACTctacagaa-gggaaaaaatttttgcaagTTACTCCTCAGCCAGACgactaatatctaaaa-atataaagaa--aaaaatgttagaccctaccaaaataaaagaatc------aaaaagggcaattaaaatg----agaaaattttca---gaagtata---aatggccgaagtatacatgaaaaaaatgtgcaccatctctggccattagTGAACTGCAAATTAAGATaacactgagtttccatcttactccagaaagaatggtttatgatcaggaaatcaaa-aataacaaatactggcaaagctgcagagaagaaggaagccttctacattgttggtggcagtataaattagtacaaccactatgcaAACTCATATGGAACAttctcaaaaatgtaaaaataa-------ggtTGAGCCATTAAGtgtccttctaggtatcttctcaaaaca-----------gttaaagtgatatatgc------atacttgtggcagcacaattcataatagctaaatcttggaagtggcccaTGTGTC---CAACAG----ATGGACAATggaa-----------------aatggagtactactttgtta-taaaaaggaaaaatgtgagtcatttgtaagagAATGGATGCACcgtgagaccataatattaagtaaatca-------tacacacaaacttaaatattgtacattttcttatatgagaaaaccaatATATAACTTAG

a score=16636
s chr3           120942265 521 + 160039680 ATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagt
s HiC_scaffold_1  45948648 466 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaaaacattagccagagctgTTAGGTAAGtggcagaaataaaaaggatttgaaTAACAAAGGGAGAAGTCAAActattcttattttcaaatgat-tgataat

a score=5472
s chr3           120942406 239 + 160039680 ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACA-TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
s HiC_scaffold_1  68361097 231 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT-ATGCTGGAATCATacagcaaattaaaaatagaagagaactATCTCAATGTtgacaaagaatatttttaaaaa------ggcc--tatAATACTCAAAGGTGGTATGTTGGATACTTTCCCCATAAGATCAGGTAAAAGGCA

a score=9027
s chr3           120942440 366 + 160039680 ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatc---actttttgcagatgatatgatagtatatataagtgaccctaaaa
s HiC_scaffold_1 169467336 310 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAAT-AGGAATAgaatgtctttatctcaatctgata---------------------------------ataTGAAAAGAAGAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAATGTATTTCTCAAgtcattagtcagagcaattaaacaagaggaagaaatacagt-----------------gaaaaaattaaattatcattatttcttacagatgacac-----tctatatag--aactccaaaa

a score=42812
s chr3           121179902 1270 + 160039680 GGGCAGTGCAGCAAACTTTATATATGGCATTCAATAGAATAGGGCTCCATAGACCCCTCCTATTATTATGGGGGTCTGGAATGGAAA---ACATGAAGA-AGATGCTCAG--TGTTG-GGGGCAAAGTTGGGACAGGGACTCCTCAGCAACTGAGGGCCTCTCTCTTGCTCTCAGTGCCCTTGCTGGGATGGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCCATGGAGGCCATGAGGTCCACCACCCTGTTGCTGTGGCTGTATTCTTTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGCATTGACAGCCCCAGCATCAAAGGTAGAGGAGTGAG-ATTACTGTTGAAGTTAC--AGAAGACAACCTGGTCCTCAGTGTAGCCCAGGATGCCCTTTAGTGGGCTCTCAGATGCCTGCTTCACCACCTTTCTGATGTCATCACACTTGGCAGGTTTCTTCAGGCGGCATGTCAGATCCACAATGGATACATTAGGGGTAAGAACATGGAAGGCCATGCCAGTGATCTTCCCATTCAGCTCTGGAATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGGATAATGTTCTCGGCAGCC-CAC--------AGCCACAGCTTTCTAGAGGGACTATCTATACTCTTCTGAGTGGCAGTGATGGCATGGACCATGGTCATGAGCCCTTCCACAATGTCAAAGTTGTCATGGATGACCTTGGCTAGG-GACCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTT----GTCATATTTCTAGTGGTTCACACCCATCACAAACATGGGGGCATCAGCAGAAGGGACAGAGATGATGACCCTTTTGGCCCCACCCTTCAAGT-AGGCCTGGCCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCACAACATACTCAGCACCGGCTTCATCCCATTTGATGTTAGCGGGGTCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGGCAAGCTCCCCATTCTCAGCCTTGACTGCGCCGTTGAACTTGTCATGGGTGGAATCAGACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCATTGGTGGCAACAATCTCCACTTGGCCAGATGCAGAACAGACAGCAGCCCTTGTAACCAGGCTCCCAATAAGGCCAAACCCATTCACATGAACCTTCACCGTCATGTCTACAGGATAAGGCTGGCACTGCACAAGAAGATGCAGCTGTCTCTGGAACAGGGAGGAGCAGAGAGATGAATC
s HiC_scaffold_1  97936683 1226 + 233722169 GGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGC--------ATCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctctt---ttcatt--tcttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAG-CCAGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATAGG--------ATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCAG--TCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAG-TTCACCCATTTTGATGCTGAT-AAATCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTC------CTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaaaaaataaaacagatc

a score=26939
s chr3           121179952 1203 + 160039680 AGACCCCTCCTATTATTATGGGGGTCTGGAATGGAAAACATG--------AAGAAGATGCTCAG--TGTTGGGGG-CAAAGTTGGGACAGGGACTCCTCAGCAACTGAGGGCCTCTCT--CTTGCTCTCAGTGCCCTTGCTGGGATGGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCCATGGAGGCCATGAGGTCCACCACCCTGTTGCTGTGGCTGTATTCTTTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGCATTGACAGCCCCAGCATCAA-------------------------------------------------------------------------------------------------------AGGTAGAGGAGTG-AGATTACTGTTGAAGTTACAGAAGACAACCTGGTCCTCAGTGTAG--------CCCAGGATGCCCTTTAGTGGGCTCTCAGATGCCTGCTTCACCACCTTTCTGATGTCATCACACTTGGCAGGTTTCTTCAGGCGG--------CATGTCAGATCCACAATGGATACATTAGGGGTAAGAACATGGAAGGCCA-TGCCAGTGATCTTCCCATTCAGCTCTGGAATGACCTTGCCCACAGCCTTGGCAGCAC----CAGTGGATGCAGGGATAATGTTCTCGGCAGCCCACAGCC---------ACAGCTTTC-TAGAGGGACTATCTATACTCTTCTGAGTGGCAGTGATGGCATGGACCATGGTCATGAGCCCTTCCACAATGTCAAAGTTGTCATGGATGACCTTGGCTAGGGACCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTTGTCATATTTCTAGTGGTTCACACCCATCACAAACATGGGGGCATCAGCAGAAGGGACAGAGATGATGACCCTTTTGGCCCCACCCTTCAAGTAGGCCTGGCCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCACAACATACTCAGCACCGGCTTCATCCCATTTGATGTTAGCGGGGTCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGGCAAGCTCCCCATTCTCAGCCTTGACTGCGCCGTTGAACTTGTCATGGGTGGAATCAGACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCATTGGTGGCAACAATCTCCACTTGGCCAGATGCAGAACAGACAGCAGCCCTTGTAACCAGGCTCCCAATAAGGCCAAACCCATTCACATGAACCTTCACCGTCATGTCTACAGGAT---AAGGC-TGGCACTGCACAAGAAGATGCAGCTGTCTCTGGAACAGGGAG
s HiC_scaffold_1   9527136 1252 + 233722169 AGACCCATCCT-TTGTAA--GGAGTCTGTGGTAAAACCTATGCCAAAAAAGGGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAG-CAGGGA-TCCATAGCATGAGACAgtctttctttcttactct---tcCTTCTCCTGGAGCTGGTGATCC-GGAAGGCCCAATCCTTGGATGTCTTTG---------------------------TGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATT--------TCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAG-GATTCCTTTGAGCCCTGGTTCACCATCTT---AAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTAGCTGTTAGTAGTATAGGTAAAGT--------------AATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGG---------------------GCTCCAACATTTA--TATACTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAGT-GTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGCTGGAGTTAAAGT------CAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=16253
s chr3           121180077  999 + 160039680 GCTGGGATGGGTGGTCCAG----GGTTTCTTACTCCTTGGAGGCCATGGAGGCCATGAGGT-CCACCACCCT----GTTGCTGTGGCTGTATTCTTTGTCATACCAGGAAATGAGCTTGAC-----AAAGTTGTCATTGAGAGCATTGACAGCCCCAGCATCAAAGGTAGAGGAGTGAGATTACTGTTGAAGTTACAGAAGACAACC---TGGTCCTCAGTGTAGCCCAGGATGCCCTTTAGTGGGCTCTCAGATGCCTGCTTCACCACCTTTCTGATGTCATCACACTTGGCAGGTTTCTTCAGGCGGCATGTCAGATC-------------------CACAA--TGGATACATTAGGGGTAAGAACATGGAAGGCCATGCCAGTGATCTTCCCATTCAGCTCTGGAATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGGATAATGTTCTCGGCAGCCCACAGCCAC--AGCTTTCT---AGAGGGACTATCTATACT--CTTCTGAGTGGCAGTGATGGCATGGACCATGGTCATGAGCCCTTCCACAATGTCAAAGTTGTCA-TGGATGACCTTGGCTAGGGACCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCTTGA-GTTGTCATATTTCTAGTGGTTCACACCCATCACAAACATGGGGGCATCAGCAGAAGGGACAGAGATGATGACCCTTTTGGCCCCACCCTTCAAGTAGGCCTGGCCT-TCTCCATGGTGGTGAAGACACCAGTAGACTCCACAACATACTCAGCACCGGCTTCATC-CCATTTGATGTTAGCGGGGTCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGGCAAGCTCCCCATTCTCAGCCTTGACTGCGCCGTTGAACTTGTCATGGGTGGAATCAGACTGGAACATGTAGACCAT-GTAGTTGAGGTCAATGAAGGGGTCATTGGTGGCAACAATCTCCACTTGGCCAGATGCAGAACAGACAGCAGCCCTTGTAACCAGGCTCCCAATAAGGCCAAACCCATT
s HiC_scaffold_1   3814669 1176 + 233722169 GCTAGGATTGGGGCTCGAATTCAGGACTCTGACTCCTTAGAGATCTTGTGAATCATAAAGTACCTCCACCCCCACAGTTGCTATGGCCAGATTCATGGTCATACCAGGAAATAACCTAACCGGAGTACAGTATTCACTCAGAGGAATACCCACCCCAG----AAAAGCAGA------------CAGTAGATGTCACC-AAGGCAACCAGCTATTCCTGTAAACAGCTCAAGGTGCCTTCCAG--GGCTCCATGACATTTGCTTCATCCCCCTTCT--TGATATTATATTTGACACCTTTGTCCCAGAGGCAGATTAAATCTATGTTTCATCAAACCCTCCACAAGCTCGCCACCCCGGGAATGGGCAGCTGGAAGGCCAATTCAATGAGCGTCCTGCTCAGCTC-AGAATAGCCTTGCACACGGCCATGGCGGGGTCAG-GGCTCCAGGGACAGGG------ACTGCTAACGTTAACTGAGCTTGCTGGAAGAGGGGGCATTCAGAATAATTTCTGGGAGACAGTGATGGCATAGACCACAGCCTTAAATTCCTCCA-ATTACAGAAGTTATTAACAGTTGACACTGGCCAGGTGTCCACCCC-TTGGTA-TgcaggtggcattgctgatatatgtatatatttttaatttgcaataCTGGGCCTTTCTGCATTCCCATCCCCTGCTTATATGTTTGAAAAAGTGTCTCTCTTAGTTGCTAAGTAGATACATCCTGGGCTTAAATTTCCAGTTCTCCTGTCTCatccttcctgagtgctaggattatggatgtgtgccaccatacccagccccAACAATCTCGAAGCAATCATCGTTCTCATAGTTCTCTCCTGTTCCAAGTATGTGG-CATCGACACAAGTGGTAGGGATGATAATACTTT-GGCTTCACCTCCGAAGCGGGTGCTGCCTATGGCTAAGATGATGAGGAGCACAGCGGATTGCAGCATGTGTTCAACATCG----CATCACTATCTGATGCTGGAGGGATCTTGCTCCTGAAAAGTGGAATTGGGATTCTTACAGACTGTA--CTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCACAGTA--TGaagtcaaggaaagagacattgaCTGCTGCAACATCCCCTT---CAAA------------AGCAGCCTATGGAACTGGA--GCCAATACAGACAAATTCATT

a score=6970
s chr3           121322495 909 + 160039680 GGTTAAATTGAGTTTCATGAAAGAATACCACTCTTGCATAGATTTCAAGGTGGCATTTCTCATCTTTGTGAAAAGTTAAACATTGCTAATTGAGTCCAATCATATATAttttttaaattagttatttattttctgtgtatggatgctttgtttatacaccagaagagggcacccagatcccttgggactacagtaacagctggttataagcctccttgtgggtgctgggaattgaattcagaacttctggaaaagcagctgatgctctcaccactgagccaccttctccagcTGCGTTCCCCCTCGCCCCTAATGTCTTGAAAAGGGAAAAATAGTGATAATATTTACTAAACTGAAATTGCTAATTTTTTTTTTTTTTAAGAATTGGActgggcatgttggtgcacatgtttaatcccagcacttgggaagcagagacaggaggatctctgtgagttcaaggccaactggactacatattaagttctaggacagctaggaatagagagagagagaccctgtctcaaacaaacaaaaAGATCATATTCACTTTAGTATCATCTAGTTTTATTTAAACCAGGACTCACTGTCCAGCAAACTTATTCTGTTACCT-TTTATAATCTAGATCCTGGTTCATGAGTTG---------AATCCTGGGACATATTAAAAGCCAGGGGGCATT--TGTTCTGTAATAAACAGGGTGTGGCTATTATTGGTTAGAAG-CCTTTCAGAG-AGGCTGATA-ATCTGCCCTTTCTCC---CCTCTTAGTTTCAGCAGCGATGACTTTTGTTACAGGGGTGGCCTTTCTGGGGATTCTCCAAACAAGACATCAGCGTACCCTCTCTCGGATGTTGTTATAAATAAGCATTTGTGTGCGAGAG---------TCTTGGTGCGTCTTCCTCCCAGACAGGTCATAGAGAT
s HiC_scaffold_1  33955406 534 + 233722169 GGTTATATAAAGCTAAATATAA----ACCAACATTCCTTAAGTTTTGAGATGACATTCTCAATTTTTGTGAAAAGTCAAACATTACTAATCAAATCCAACCATGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGAAAGGG-AAAACAGTGATAATATTTACTGAATTGGAA-----------------------------------------------------TTAGtatcaaaacttgaaaaa----------------------------------------------------------------------------------------------------------------atCCATTTAACTGCAAGCCAGTTTTACTTAAATCAGG----actatccaacaaaaatattCTGTCAGCTACTCATGATCTAACTTCTGGTGTATGAGATGTATTAAGTAAGTTATGGTACACATAAAAAGCCATGAgacatttctgttctgtaata---aGGCAGTGACTATTACTCATTAGAAGCCCTTTTAGGGTAAGTCGTTAGATctgtcctttctcccttcttcttgatgtcagaaaagataatttttgtTCCAGGGATG----TTCTTGGGATTCTCCAAATACTCCATCAACTTACCCTTTTTC-----------CCGGTGATCGTTTATTCTTAAGAGAATCCAGCAGCCTGATCTGTCTTCCTCCCAAACAGACCATGCAGAT

a score=44419
s chr3           121370684 1592 + 160039680 TAAGGAGAGCATTTTAGTCTCGCTCTGTCTGTCTGGCCTCTATTGGCTCAGCCTGCATGCTTGTGGACTGTCGGTG-ACCATGGCTCAGGCCCGT-TCACATACTCTGCATGATCTTAGGCCCAGATAATTCAGGAAAAATCAGTTTGAGAACTGAGCCTCTTTTAATCTGCCTACTAGGTTGGGACCGGATAA-GGACTGGTTTGGG--CTTTTGATTTGTCGACGTCTCCCGGACAGCTCTGTGTATAGTATTTCCATAAACTGTCTTCTTTCCCTTCCCTTCTCTTGAACGAAGAACGAAGCCATCTCCCCCCACACCCCCTCTTTTTGAGAAGAGACAAGAGCCTGCCGTTCCAGCCTCTTCCATCCCTCCTGCTGTTGCTTGGCTTTTCTTCAGTTTTATTCTAGCCAGT-----ATTTGTATCTCCAGAGGGTCTGCAGCC-ACATGGGGCCCTGAAATGGGGCGAGCCCCCCCCCCCAAATTCTTACAGAAGATGACCATGTCTCAGTCACGGGAGCCAGGCTGAAAACTTTTTTAAAGTTCTTTTTATAAAGTCATTAAACGTGAAATCAATATTTTAAAA-GACTAAGGTGGGGG----GTGGGCTTTGAGAGTTCCAAATAGACAGAAAAGCTGATTTCATACTTCCCTGCCAAAAACATTGTTCTTGCTTTCAGGCAAATGACTTGGGTGTTAATTAAGGCTTCACACTTCCTGGCTATCTCCTTTTTCACATTCTTGCTGCTAATCGTCATGTTAAGAGACACATGACTTCTGTTTCAAAGGCTCCAGTTTA--AGAGTGGAAACAAAAATCTCAGCTCCACAGGAAAGGAAAAGAGATTAGGATTCGAGTCCAGCCATTTGCTTATTCATCTGCATATGGTTAAAAGATTTCCAAGCATCCACTGGTTTCTCTTTCACTGTGACATGAGGCCAACCCAAG----GAGGGGAAGAGAAAAATCCTGTTCCT-CTCCTGATGTAGGAGCACATCTTCCATTCGCCTTGGGGGCAAGAGATTGCTTCCTCTTTTAATAGTAAGCCAAAGTAACCGAAC-TTGGAGAAACTGGCTTCTTCTGAAA-GTTATTTTTCCAGTTAGCTTTTCATTTTATTTGCAGTGCCAGGCTGGAAACCATGCACACATTAGACTTAGCTGTATTTCCGGCCctaattacctgttgctctgcatcaatttac-----aaattagcggtgggaaacaagcatcatttaatgaagcccacagactctgtgggtcagcacttcacagggtctagaaggaaaggcttct-tcagcttcatggtgtctgagcttcagtggggagacaggggggtggaggacactaaaagggctaggagtgactcaa----------caggctcagctcgaagatcc--------------aaggcctgaagcaccatgactc-aagtt--tgtactaagat----ctgtcaacacggtgtctacgcacagcctgcccatccgtgagccttgagttcctctgcagtgtggctgggttcactcttccagagagtgatcatatcaggactctgagtgcaaatgtCACTTCAGGTGTGTTCCAAGTAGCTAAGGAC-CTCAAATTCAGGAAAAGACAGTTCAGAGGGAAGAGAGAA
s HiC_scaffold_1 101960287 1471 + 233722169 tgatgaaagcattttag----gCTGTCTCCACCTGGTTGCTTTAGACTTCGCTTG--TTCGAATTGGTTGTCAGTGGACTAACACATGGGCTCTTGTTACATGCCTTGCATGATTTTATGTCCAGATAATTCAGGGAAAATCAGG---------GAATCTTTTTT-----GTCTGCCAGACTGgaactaaaaaacagaacattcCGGATACTTTGTACTCCTTGAtgaatttttgtccattttgtataTGGTATTTCCATAAAA-gtcttgctttctttcccttttctt---tgaaGAATGAA---AGCTCCCCCT------TTTCTTTTCAAGGAGCAAGAAGACTT----ATCCCAGCCTCCCCCATTCCTTCTGCTGCCATTCAGCTTCTTTGCCCTTTGACTGTGCCCTGATCTCAGTTTGGATATTCGGAGGGCTAGCAACTGACATGGGGCCATGG---------------TCCTGTCTGATGCCATAGAAAGATGACTGAATTTCAATCACCAGAGATAAGCTGAAAAATTTA--AAGGTTCTCTTTATA--GTCACTGAGTTTGAAATCACTATCTTAAAAAGACCCAAATGGGGGAAAAGGGGGCtccaagaa--------agacagaaaaaa-gattcCACATTTCCTCGCCAGAAACATTGTTCTTATTTTCAGATGAAAGGTCTGGGTAGTGATTAAGGCTTCGTTCTCAGTAGCTATCTCCTTTTCTACATTCTTGCTGCTAATCGTCATG-TATGCAGCACATGACTTCTGTTT-AAATGTTCAAGTTTATTAGAGTGGAAAAAATTCTCTTA-TtatacaggaaaggaaaagagattagGAATCAAGTCCAACCATTTGCTTATTCATCTGCATATGgttaaatgatttaaaagaatCCATTGGTTTCAGTTTCACTGTTACATG----CAAGCCAAGAagcaaggagaaaacaaaaatccttttCCTACCCATGGTGTaaaaaaatgcatcttttttGCCTTGGGGGCGAGAAATTGCTTCCTCTTCTAACATTGAGCCAAAGTACTCAAACTTTGGGGAAAATGACTCTATCCGAAAGGCTATTTTT----------------------------------------------------------------------------CTAATTACCTATTGCTTTGTAACAAATTATCCTAAAATTTAGTGGTGGAAAACAACTACCATTTAATCATGCCGATGGACTC--TGGCTCAGCAATTCACAGAGTATAGAAGGGAGGGCTTGTCTTGGTTTCAC--TGTCTGAGTTTCAGCTGGGA----------------AGACTAGAAATGCTAGGGGAGACTCCAGTGCCAGTGCTAGAATCATCTGGAGGCTTCTCGCTCATATGGTTAGCGCCGGGATTAAGATGACTCTAAGTCTGTGTACTAAGATGCAACTGTGAACATAACATTGACACATGGTCTCTCCAT--GTGA--CTTGGGCTCTCTTG-AGTTCTGCGAGGAGCACCCCTCCAGGGAA---------CAAGACACCACATCAGACTGTC-CCTCGGCAGTATTCT-AGTGGCCTGGCATGTTCAGATTCAGGCAAAGTCAGTTCAAATTGAAGGGAGAA

a score=23063
s chr3           121380039 775 + 160039680 TATGTCAAAATTGTTCTTTTTTTATTTAGTTTGTATTGATAATCATAAACTTAACCCTGCAATCAATCCAGCTAGGCTTGGAGGGGGATGAGGAAAATAAGGAGCTTAAAGACCTTCAGTGAGAGCAGAGATCAC-AGGTATTGTGAGCAGATGGG--GTAGAGATGCTCTCCTGAGCTGCAGAAGGAATGGTCT-AGTGGGTAAGATGCCCACAAGAATTA-----GAGCTGTCCACAGTCGGCGATGGTCATCTCCTTGCTTGTCTTGGCATTCCTGGACCAATAACATCCCATGACTTCCACAGGCTCATGATTTCTTTCACCTTACCAAAGAGCACACAAAAGCCATGCAGCCACTCTGTCTTGACAGTGCAGATAAAATACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACGAGATGCCAGGAACTGTACACTTCAGGATGAAGTTCTCATCCTCAACTTTCTCGCTGTAGA-----GGGCCCAGTGCCACTGTGGCATGTGACGTCACCACCCTGGCACACGAATCCTGGAA-AATTCTGTGAAAGAAGGAACCCTCGAATCCAAATCCTTTCTCTCCCATGCTCAGAGCACAAAA-GGTTTCTGCTGTCTTTGGAACTTTGTCCGCAAACAGCTCGAAGGAGCCGAAGCCCAAGGATTTCACATCGACTGTGATGCGGAGGAACAAAGTGAAGTTGACCATGCCTGCAGCAAGCAGTGAT--AGCAGAAAGTT----GTATCTACAAAGCCACTT----TCTATGTCAAAAT------TCTCAAGGTTCAT
s HiC_scaffold_1  72460673 762 + 233722169 tatgtc----tttttttttaattatttaggttTTATTCATAACCATAAGTTAAACTctgcaaa--------------------------aaggaaaatatggaacCCAGAACACTGCAGTTTCAGCAGAGATGATGAGGTGTTTTGAGCAGGTGGGTCGCAGGG-TGCCCTTCTGAGT---GAGAGAAATGGTTTTGGTGATCGTGATAT--AAAGGAGTCACATGTGTGTTGTTCACGATCGGCGATGTTGATCTTTCTCCTGGTCCTGCAGTTTCCTGACCCGAAGCGCTTCATAGCACCCTGGAGTTCATATCCTCTTTCACTTTCCTGAAGAACATGAGCTTGCTTTCCAACCTCTTGCTTTTGGTAATGCAGATGAAAAACTGA-AACCCTTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCA---CTGAATTTCTC-CTATAGACACTTGCCACCAGTGGCACTGTGGCCTGTGACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAACCTAatgttttctctccagtgttcacagcaaaaaatgttttctgttgtctttggAAGTTTGTCTGAAAATAGCTCAAATGAGATGCAGCCCAAGGGCTTGCCATGGGC-GTGATATCAAGG-ACACACTGGAGTTGACCACAGTTG--GCAGGCAACAACTAAATAGGAAGGTAGCAGCATCCACAAAGCcatttctgatttaattcatAACATTATATCTCAAAGTGCAT

a score=7104
s chr3           121454944 150 + 160039680 AGATGGGTACCAACAAATGTGCCAGCCAGGCGGGCATGACAGCCTATGGGACTCGGAGGCATCTTTATGATCCCAAGATGCAGACGGACAAACCCTTTGACCAGACCACGATTAGCCTGCAGATGGGCACCAACAAAGGGGCCAGCCAGG
s HiC_scaffold_1 114895811 140 + 233722169 AGATGGGTACCAACAGCTTTGCTGGCCAGCAGGGCATGACAGCCTGCAGCACCTGGCAGCACCTCTGTGACTCCAAGCTGGGCACAGACCAGTCAATAGATCAG----------GCATGCAGATGGGTACCAACAAAGGGACCAGCCAGG

a score=6394
s chr3           121461094 255 + 160039680 TGCTTACCAAAAACCCTGGGTCCATAAAGTACGGTTTCTCCGACGATCCATCATTTGTTTCCAGGTCCACAGCAAAGCACAGGAAAAGGATATCCAGCGCAGTTTCAAACACGGATAGGAAACTGTGAGCCACCACGCAGGCAAAAAAGGCAACCAGCAGCAGAGGGATGGCCCACACCTGGAGCGCACGGCTGTAGTTAAACGCCATCAGACCCCCGAAAATGCTGAAGCACACCACTAGCACCTGGGGAGGAG
s HiC_scaffold_1 167581726 255 + 233722169 TACTCACCATTAGCACTTTATCCATGAAGAACTCTCTCCCAGGGCTTCCATCATTGTACTTTGTATCAATGGCAAAACACAAGAATAGTACATCCACAACCATTTCATAGATGGAGAGGAAGCAGTGAGCAACCAGGAAAGCAAAGAGGCAGACGATGATCAGAGGCAGCACCCACACTGTGTAATCCTGCTGGTAGTTGAGCAGCATAATCCCAGCCAAACCTGTGCTGCAGACTATCAGCACCTACAGAGGAG

a score=6453
s chr3           121497703 158 + 160039680 AAAGAGTGGACTC--ACCTGTTGAAATAACAAGCAACCATTGCTCCTGCTACAGTCATCCGCTGGCATGCAAGGATGAATTCGCTAGTCCAGATGAGGCCAATTAAATGGTACCACCACATATACCGAATGCCGGAAAGAGGCTTATATTCCACTTGGCC
s HiC_scaffold_1 167608793 160 + 233722169 AAAAAGTAAACTCTTACCTCGTAAAGTAGTATGTCACTACGGCTCCAGCCACGGTCATCTGCTGACATGCTAAAATAAATTCACTGATCCAAATTAGGCCTACCACATGGTACCACCACATGTACTGCAGGGGACCAGAAATTTTAAACTCCACCAGGCC

a score=5038
s chr3           122025012 172 + 160039680 ACAGTCTTGTGTTGTATAATGTTACTTGGATCAATGGTCAAAGA------------TGGCCGTTCCATATGATTATGACACCTAGTGACACCAGAGTCATCTTGTATTGTGCAAGCATACTCTATGATGTTCACACAATGACCAAATTA--TGGACCTATTTCTCAAACCAAATCCCTGTCATTAA
s HiC_scaffold_1  29175616 178 + 233722169 ATAAGCTTACATTGCATGATAATGCTTTGGCTAG----CAAAGAATGCATATACCATGGTGGTCCCATAAAATGATGTCACCTGGTGACATCATAGCCATCTTTGTTTGTGTAAGCACAGTCTATGAT----ACCTAATGACAAAATTAACTAATGACACTTTTCAGAAGATATATCTGTCATTAA

a score=3765
s chr3           122025054 94 + 160039680 GATGGCCGTTCCATATGATTATGACACCTAGTGACACCAGAGTCATCTTGTATTGTGCAAGCATACTCTATGATGTTCACACAATGACCAAATT
s HiC_scaffold_1 112607061 94 + 233722169 GATAGTGGTCCCATAAGTTTATGTTGCCTAATGATGTTACAGACATCTTAGTTTGTATAAATACACTCTGTGAGGTGTCCACAATGATGAAGTT

a score=6015
s chr3           122025061 129 + 160039680 GTTCCATATGATTATGACACCTAGTGACACCAGAGTCATCTTGTATTGTGCAAGCATACTCTATGATGTTCACACAATGACCAAATTAT----GGACCTATTTCTCAAACCAAATCCCTGTCATTAAGGGACA
s HiC_scaffold_1 140103715 133 + 233722169 GTTCCATAAAATTATATTACCTAGTGATGCCATAGCCACCTTAGTTTGTGTAAGCATACTCTGTCATATTAGCACAGTGACAAAACTGTCTAAAAATGCACTGCTCAGAACACAACCCTGTCATTAACGGACA

a score=4628
s chr3           122025067 125 + 160039680 TATGATTATGACACCTAGTGACACCAGAGTCATCTTGTATTGTGCAAGCATACTCTATGATGTTCACACAATGACCAAATTATGGACCTATTTCTCAAACCAAATCCCTGTCATTAAGGGACATG
s HiC_scaffold_1 143042688 115 + 233722169 TAAGATCATACCACCCAGTGATGTCATGCTCATCTTGGCTTGTGTAAATACACCTTACAATATTCCCACAGTGACCAAATCAGCAAC----------AGACACAATTCTGTCATTAAGTGACATG

a score=3778
s chr3           122025078 71 + 160039680 CACCTAGTGACACCAGAGTCATCTTGTATTGTGCAAGCATACTCTATGATGTTCACACAATGACCAAATTA
s HiC_scaffold_1   8726311 71 + 233722169 CACCTAGTGACAGTGTAGCCACATTACTTTGTGTAAGTACACTTTATGATGTCCACACAATGTTAAAATCA

a score=8324
s chr3           122054163 176 + 160039680 CCGTCTTGTTTTCATTTCCTGTCTTAA--GGCCATTTTCCCAACAAGGCGATGCCTTCAGCAGGACTGTTACCGTGGCTCCAGGGGATTTTCTGCAATATGAACAACCCTTGTTTTCAAAACCCCACCCCTGGAGAGTCTCCTGGAACTGTCTCAAACTATAACAACTCCATGTAAGT
s HiC_scaffold_1 168049685 178 + 233722169 ctgtgttttttttcctctcaatctCAACAGGCCACTTTCCGAACAAAGCCTTGCCCTCTGCAGGAACGCTTCCTTGGGTTCAGGGGATCGTCTGTAATGCCAACAACCCCTGTTTCCGTTACCCAACTCCTGGTGAGGCTCCTGGAGTTGTTGGAAACTTTAACAAATCCATGTAAGT

a score=4666
s chr3           122083948 164 + 160039680 TGTCTGACCTCCTGTGTGGGTACCCAGAGGGAGGAGGCTCCCGAGTGTTCTCCTTTAACTGGTATGAAGACAATAACTATAAAGCCTTCCTGGGGATTGATTCCACAAGGAAAGACCCCGCCTATTCTTACGACAAAAGAACAAGTAAGTCC-------TCTGAGTCCTGT
s HiC_scaffold_1 168090769 171 + 233722169 TGTCTCGCATCGTTTGTGGCCATCCCGAGGGCGGGGGACTGCAGATCAAGTCTCTTAACTGGTATGAGGACAACAACTACAAAGCTCTTTTTGGAGGCAATGGCACGGAGGAAGATGCTGACACCTTCTATGACAACTCTACGAGTGAGTACCCGCAGATCAAAGCCCTGT

a score=8961
s chr3           122102645 987 + 160039680 TCCCCACCTTTGTGATCCTCCATCCACAGTGTCTGGTCCTGGATAAGTTTGAAAGTTATGATGATGAAGTGCAGCTCACCCAACGAGCCC-TGTCTCTCCTGGAGGAGAACAGGTTCTGGGCCGGAGTGGTGTTCCCTGGCATGTATCCCTGGGCCAGCTCC---TTACCTCCTCATGTGAAGTACAAGATTCGGATGGACATAGATGTGGTGGAGAAGACCAATAAGATCAAAGACAGGTGATGGCTCAGTCTTGAAAGGTTTCTCCA--------AAACTCATGGTGAATTATATTTGGTAGCGAGTAGAGGATTAAGGGCAAATGCAGCCTATGGATCAACGAA-GGGAAGCTAAATGGGAGAAAGTATGATTTGTGCAGATGGAGGTAGACCGAAGCAATCACCTCGTGAGTCatggccatcggagttagcactgtgaccccaaagtagagctggctagtttgggaaacatgtaggacatcatttctcaacctgtgggtcac------agtcctttcacagggctggccccagaccatcagaaagcacagatatt---------------------tatatttttct-aacagtaacaagattacagttaagaagtagcaacaaaaataattttatgcttgggggatgggtcaccccagcacaaggcgctgcattattaaacgatcgccacgttaggaaggttgaggaccacAGCTTGAGGAGAATTCGTCAAGGGACCGAG-TTGTGGGGTAACCTGGGCTTGTGAAGTGAGTGAGTTACCCACTCGCACTTACATCCTTCCCCCTTCATCCTGTGCCT------------------------------TCTTAGGTACTGGGATTCTGGTCCCAGGGCGGATCCTGTCGAAGATTTCCGGTACATCTGGGGAGGTTTTGCCTATCTACAGGACATGGTGGAGCAAGGAATCGTGAAGAGTCAGATGCAGGCA--GAGCCTCCAATTGGAGTCTATCTCCAACAGATGCCTTATCCCTGCTTTGTGGATGACTCGTGAGT--CC--CAGACCTCTATCTT
s HiC_scaffold_1 168098139 977 + 233722169 TTCTCACAAATGTTATTCCCCTTC---AGTGTGTCAACCTCAACAAGCTGGAGCCCATTCCCACAGAAGTCCGGCTCATC-AACAAGTCCATGGAGCTGCTGGATGAGAGGAGGTTCTGGGCTGGAATTGTGTTCACGGGAAT-CACTCCTGG--CAGTGTTGAGCTGCCCCATCATGTCAAATACAAAATTAGAATGGACATTGACAATGTGGAGAGGACAAATAAAATCAAGGATGGGTAA--GCTGAATCATATCACACCAGTCCAGTCTCAGGAAACTCAAGAGCAGCTATTGTGATTAGC-------------------AGTGCTTCCATTGAACTAATAAATAGGTAGCAATTTCAACAGAAAAATCATT------GGTGGCAGCATTTTGATGAAACTGGCATAT---TCATTGCTGGGGG--------CTATTATTTCAAAG-----CTCAC----------AAAATGTTGG-TATCTTTTCTCCATT-----GTCACTTGGGAAAATTAATCTCAAGGAAGtcaacagaaaa---gaaagcaaggctTTTAGGTCTTCTGTGCCAGCATTatctatttttatgaaaagagGCAAACATCCAGTTAAAAAGGGGATATTATATCCATTTAATGCAATGAGGGTGG--------AGGGAAAAAACCCAAACCATCTAGTAGTATGTTCATTCTGATTGTTT-------CTACTTAAAGATAGTGTGCATGTCAACTGAGACTATAAAGTAAGATACAGGTATAAAG--AATGGTGTGGTTGTGTGGGattggatgtttttttttttagtttatggcTCTAAGCGATATTTACTCACTTGTGGTTTGGTTTTAGGTACTGGGACCCTGGTCCTCGGGCTGACCCCTTTGAGGATATGCGCTACGTATGGGGGGGCTTTACCTACTTGCAAGATGTAGTGGAGCAGGCAATCATCAGGGTGCTGA--CAGGCACTGAGAAGAAAACTGGGGTCTATGTGCAGCAGATGCCCTACCCTTGTTATGTTGATGACATGTAAGTGACCAGCAAGCCACCATCTT

a score=7296
s chr3           122105264 271 + 160039680 CCAGGGAC--AGCTGGCTCTGTTCTGCTTTTTCCTCTCGC-------------TTCAGCTTCATGATCATCCTGAATCGCTGTTTCCCTATCTTCATGGTGCTGGCGTGGATCTACTCTGTCTCCATGACCGTTAAGGGCATTGTTTTGGAGAAGGAGCTGAGGCTGAAGGAGACCTTGAAAAACCAAGGCGTCTCTAATGCTGTCATCTGGTGTACCTGGTTCCTGGATAGCTTCTCCATCATGGCGCTGAGTATCTTCCTCCTGACGCTGTTCATCATGGTAAG
s HiC_scaffold_1 168100399 286 + 233722169 CCATGGACCTGGCTGacagtgtctttctttcttctcctgccGTTCTTTGGGGCTCCAGCTTCCTGAGGGTAATGAGCCGGTCAATGCCCCTCTTCATGACACTGGCCTGGATTTACTCTGTGGCTGTGATCATCAAGGGTATTGTGTATGAGAAGGAGGCACGGCTGAAAGAGACCATGCGGATCATGGGCCTGGACAACGGCATCCTGTGGTTCAGCTGGTTCATCAGCAGCCTCATCCCTCTGCTTGTGAGCGCCGGCCTGCTGGTGGTTATCATGAAGGTAAG

a score=9221
s chr3           122110446 207 + 160039680 TCCCTTTGGTTTCAGCATGGAAGGATCCTCCATTACAGCGATCCCTTCATTCTCTTCCTGTTCTTGTTGGCCTTTGCCACTGCGACCATCATGCAGAGCTTCCTGCTCAGTACTTTGTTTTCCAAGGCCAGCCTTGCAGCAGCCTGCAGTGGGGTCATCTACTTCACCCTCTACCTACCACACGTTCTGTGCTTTGCCTGGCAGGAC
s HiC_scaffold_1 168102298 207 + 233722169 TCTCTTCCTTTCCAGTTGGGAAACCTGCTGCCCTACAGCGACCCCAGTGTGGTGTTcctcttcctctgtgtttttgccaCTGTGACCATCCTGCAATGCTTCCTGATTAGCACGCTCTTCTCCCGGGCCAACCTGGCTGCTGCCTGCGGGGGAATCATCTACTTCACCCTGTACCTGCCCTATGTCCTGTGTGTGGCATGGCAGGAC

a score=7800
s chr3           122112343 300 + 160039680 TTATTGTCTCTGCTCATTGCAGAGCCTACTTTCTTCCGTGGCATTTGGGTTTGGCACCGAGTACCTGGTCCGCTTTGAGGAGCAAGGCCTGGGGCTGCAATGGAGCAACATTGGGAAGAGTCCCCTGGAAGGGGATGAGTTCAGTTTC----CTGCTGTCTATGAAGATGATGCTTCTCGATGCTGCTCTCTACGGCTTGCTTGCTTGGTATCTTGACCAGGTTTTCCCAGGTAAGCCAGGAAAAGTCAGGCTGCTGTATCTCCCCACGGTCAAGAGAATTAGACTCTTTAGATGCAGAGGTCT
s HiC_scaffold_1 168103587 292 + 233722169 TTTTTGCCTCT--TTCTCCCAGAGCCTGCTGTCTCCTGTGGCTTTGGGATTTGGCTGTGAATACTTTGCCCTTTTTGAAGAGCAGGGCATAGGGGTGCAGTGGGACAATCTCTTTGAGAGCCCAGTGGAGGAGGACGGCTTCAGTCTCACCTCTTCAGTCTCC----ATGATGCTGTTTGACACCTTCCTCTATGGGGTGATGACGTGGTACATCGAAGCTGTCTTTCCAGGTACGCT--GAATTTCCATCCTGCTTTGGCTATCT----TCTAGGGAAAGATGATTTCTGGCTGCAGAGCTTT

a score=5780
s chr3           122121659 151 + 160039680 CTGGTGCCTGGTGTGTGTGTGAAGAACCTGGTGAAGGTTTTTGAGCCCAG-TGGCCGGCCAG---CTGTGGACCGTCTGAACATCACTTTCTATGAGAACCAAATCACGGCGTTCCTGGGTCACAACGGAGCGGGAAAGACCACCACCTTGTGAG
s HiC_scaffold_1 168106689 151 + 233722169 CTGAAGCTGGGTGTGTCCATTCAGAATCTGGTGAAGGTTT----ACCGAGATGGCATGAAAGTGGCTGTCGATGGCCTGGCACTGAATTTTTATGAGGGCCAGATCACCTCCTTCCTGGGCCACAACGGAGCAGGGAAGACAACCACCATGTAAG

a score=4943
s chr3           122123555 141 + 160039680 CAGGTCCATCCTGACAGGACTGTTGCCACCGACGTCAGGAACTGTGCTCATTGGGGGAAAAGACATTGAAACCAACCTGGATGTAGTACGGCAGAGCCTGGGCATGTGTCCACAACACAACATCCTGTTTCATCAGTAAGT
s HiC_scaffold_1 168107788 141 + 233722169 CAGGTCAATCCTGACTGGATTGTTCCCTCCCACCTCTGGCACTGCCTACATCCTAGGGAAAGACATTCGCTCGGAGTTGAGCGCCATCCGGCAGAACCTGGGGGTCTGTCCCCAGCATAATGTACTATTTGACATGTGAGT

a score=7971
s chr3           122126803 160 + 160039680 CCTTCCTTCTGCCTCCAGGTGGCATGCAGAGGAAGCTGTCTGTTGCCATTGCTTTTGTGGGAGATTCTAAGGTGGTGGTCCTGGATGAGCCCACCTCTGGGGTGGACCCCTACTCCAGACGCTCCATCTGGGACCTGCTCCTGAAGTATCGCTCAGGTGA
s HiC_scaffold_1 168109103 160 + 233722169 CCTGTTTTTGTCCTGTAGGTGGCATGCAGAGAAAGCTGTCTGTGGCCTTGGCCTTTGTGGGGGGATCCAAGGTTGTCATTCTGGATGAGCCTACAGCTGGCGTGGACCCATATTCCCGCAGGGGAATCTGGGAGCTGCTGCTGAAATATCGGCAAGGTAA

a score=7474
s chr3           122128116 159 + 160039680 CCCCACAGGCAGAACCATCATCATGTCCACTCACCACATGGACGAGGCAGACCTCCTTGGGGACCGCATTGCCATCATTTCTCAGGGAAGGCTCTACTGCTCTGGAACCCCGCTCTTCCTCAAGAACTGCTTTGGCACAGGCTTCTACTTGACCTTAGT
s HiC_scaffold_1 168110058 159 + 233722169 CCTGGCAGGCCGCACTATTATTCTCTCCACCCACCATATGGATGAAGCGGACATCCTGGGGGACAGGATTGCCATCATTTCCCATGGGAAGCTGTGCTGTGTGGGTTCCTCCCTGTTTCTGAAGAACCAGCTGGGAACAGGCTACTACCTGACCCTGGT

a score=4603
s chr3           122132558 176 + 160039680 CATGTCCCAGAGGCAAAGCTGGTGGAATGCATTGGTCAAGAACTTATCTTCCTCCTTCCAAACAAGAATTTCAAGCAGAGAGCATATGCCAGCCTTTTCCGAGAGCTGGAGGAGACTCTGGCTGACCTGGGGCTCAGCAGCTTTGGAATTTCTGACACTCCCCTGGAAGAGGTAAG
s HiC_scaffold_1 168112551 176 + 233722169 CACGTGTCTGAAGCCCGGCTTGTAGAAGACATTGGACACGAGCTGACCTATGTGCTGCCGTATGAAGCTGCTAAGGAAGGAGCCTTTGTGGAACTCTTCCATGAGATTGATGACCGGCTTTCAGATTTGGGCATCTCCAGTTATGGCATTTCAGAGACTACCCTGGAAGAAGTAAG

a score=4661
s chr3           122136975 137 + 160039680 TACAGATTGTTCTCCCTGCCACTTTCGTGTTCTTGGCTCTGATGCTTTCAATCATTGTGCCTCCGTTTGGTGAATTTCCAGCTTTGACTCTTCATCCCTGGATGTATGGGCATCAATATACCTTCTTCAGGTGCGTA
s HiC_scaffold_1 168116879 137 + 233722169 TATAGATTGTCCTGCCAGCTGTGTTTGTGTGCATTGCCCTGGTGTTCAGCCTGATTGTGCCACCCTTTGGGAAGTACCCCAGCCTGGAGCTTCAGCCCTGGATGTACGATGAGCAGTACACGTTTGTCAGGTATGTA

a score=8449
s chr3           122147724 180 + 160039680 TCTAGGTATGGTTTAACAACAAGGGCTGGCATGCCCTGGTCAGCTTTCTGAATGTGGCTCACAACGCCATCTTACGGGCCAGCCTGCCCAGGGACAGGGACCCTGAGGAGTATGGAATCACTGTCATCAGCCAGCCTCTGAACCTGACCAAGGAGCAGCTCTCGGACATCACAGTGTGAG
s HiC_scaffold_1 168125489 180 + 233722169 TTCAGGTGTGGTTCAATAACAAGGGCTGGCATGCCATCAGCTCTTTCCTGAATGTGATCAACAATGCCATCCTCCGGGCCAATCTGCAGAAGGGAGAGAATCCTAGCCAGTATGGGATTACTGCTTTCAATCATCCCCTGAATCTGACCAAGCAGCAGCTGTCAGAGGTGGCTCTGTAAG

a score=5484
s chr3           122155244 168 + 160039680 GGTCCAGGGTCTTACTGTCTCTTCTCTTCCAGATGAATTATGCTGTGAGTGCGGGATTGGTGGTGGGCATCTTCATTGGATTTCAAAAGAAAGCCTACACATCCCCAGACAACCTTCCTGCTCTCGTCTCTCTGCTCATGCTGTATGGGTAAG--CCATCTGGGCCAGGG
s HiC_scaffold_1 168128898 170 + 233722169 GGTCaattttatttctgtgctttGTCTTTTAGTGCAATTATGTGGTCCCTGCCACACTGGTCATTATCATCTTCATCTGCTTCCAGCAGAAGTCCTATGTGTCCTCCACCAACCTGCCTGTCCTCGCCCTTCTACTTTTGCTGTATGGGTAAGGCTCCTCTGGGTAGGGG

a score=7234
s chr3           122156334 147 + 160039680 CAGATGGGCAGTCATTCCTATGATGTATCCAGCATCCTTCCTGTTTGAAGTCCCCAGCACAGCCTATGTGGCTTTGTCCTGTGCTAACCTGTTCATCGGCATCAACAGCAGCGCCATCACCTTCGTCCTGGAATTATTTGAGAATAA
s HiC_scaffold_1 168129150 147 + 233722169 CAGGTGGTCAATCACACCTCTCATGTACCCAGCCTCCTTCGTGTTCAAGATCCCCAGCACAGCCTATGTGGTGCTCACCAGTGTGAACCTCTTCATCGGCATCAATGGCAGTGTGGCGACTTTCGTGCTGGAGCTCTTCACCAACAA

a score=4288
s chr3           122157814 169 + 160039680 GCCTCACTTCTCTTTCTCAGACGCTGCTCAGGTTCAATGCCATGTTGAGGAAGTTGCTCATTGTCTTCCCCCACTTCTGCCTGGGCAGGGGCCTCATTGACCTGGCACTGAGCCAAGCTGTGACAGACGTCTATGCCCAGTTTGGTGGGT--AGCATTCTAGGTCTGTGGG
s HiC_scaffold_1 168130660 167 + 233722169 GTCTCTCTCATTGTTTTTAGAAGCTGAATAACATCAATGATATACTGAAGTCTGTGTTCCTGATCTTCCCACATTTTTGCCTGGGACGAGGGCTGATTGATATGGTGAAAAATCAGGCGATGGCTGATGCCTTGGAAAGGTTTGGTGAGTGAAGCA----GGGGCTGTAGG

a score=4467
s chr3           122158284 152 + 160039680 TTCTGATG------TCCTGTTGCTTCTATTCTCAGGTGAGGAGTACTCTGCAAACCCATTCCAGTGGGACCTGATTGGGAAGAACCTGGTTGCTATGGCAATAGAAGGGGTGGTATACTTCCTTCTGACCCTGCTCATCCAACACCATTTTTTCCTCA
s HiC_scaffold_1 168131815 155 + 233722169 TTCTGATGGAATCTTTGTATTGTGTCTGC---CAGGGGAGAATCGCTTTGTGTCACCACTGTCTTGGGACCTGGTGGGACGAAACCTTTTTGCCATGGCTGTGGAAGGGGTCGTGTTCTTCCTCATTACTGTTCTGATCCAGTACAGATTCTTCTTCA

a score=4286
s chr3           122162330 115 + 160039680 TGATGAAGATGACGATGTGGCTGAAGAAAGACAAAGAGTTATGAGTGGGGGAAATAAAACCGACATCTTAAAGCTAAACGAACTAACCAAGGTGAGG-AGCAGGTGTGGGCGGTAT
s HiC_scaffold_1 168132249 116 + 233722169 TGATGAGGATGAAGATGTAAGGCGAGAAAGGCAGAGAATTTTGGATGGTGGAGGACAGAATGACATCTTGGAAATCAAGGAGTTAACTAAGGTAGGACAGTGAGTGTGGACTATAT

a score=5424
s chr3           122163771 105 + 160039680 CTCTGTTT---TCTCCTAGTGCTTTGGCCTCCTGGGAGTGAATGGTGCAGGCAAAACCACCACATTCAAGATGCTCACTGGGGACACCACAGTGACATCGGGGGATGC
s HiC_scaffold_1 168133717 108 + 233722169 CTCAGTTTCACTCTTGCAGTGCTTTGGGCTTCTGGGAGTTAACGGTGCTGGCAAATCATCAACCTTCAAGATGTTAACTGGAGACACCACGGTTACCCGAGGGGATGC

a score=6581
s chr3           122166634 157 + 160039680 TTTCTTCTTGCAGCATTTTAACTAGTATTTCTGATGTCCATCAAAACATGGGCTACTGTCCTCAGTTTGATGCAATCGATGACCTGCTCACAGGCAGAGAACACCTTTACCTCTATGCCAGGCTGCGGGGCGTGCCATCGAAGGAAATCGAGAAGGT
s HiC_scaffold_1 168136041 157 + 233722169 tttttctttgcagcatCTTATCAAACATCGATGAAGTACATCAGAACATGGGTTACTGCCCTCAGTTTGATGCCATCACAGAGCTGCTGACGGGGAGGGAGCATGTGGAGTTCTTTGCCCTCTTGAGAGGAGTCCCAGAGAAAGAAGTTGGCAAGGT

a score=4784
s chr3           122169876 156 + 160039680 TTCTTCTCTTTCCTAGGTTGCCAACTGGGGTATCCAGAGCCTGGGCTTGTCTCTCTACGCTGACCGCCTGGCAGGCACCTACAGTGGAGGCAATAAGAGGAAACTCTCTACAGCCATAGCTCTCACTGGCTGCCCTCCCCTGCTGCTGCTGGTGAG
s HiC_scaffold_1 168136533 155 + 233722169 TTTTTATCTCTCC-AGGTTGGTGAATGGGCGATTCgcaaactgggcctggtgaagtATGGAGAAAAATACGCGGGTAACTATAGCGGAGGCAACAAGCGCAAGCTGTCAACAGCCATGGCTTTGATCGGTGGGCCTCCTGTGGTGTTTCTGGTGAG

a score=4041
s chr3           122170736 110 + 160039680 TGCAGGATGAGCCCACGACAGGGATGGATCCCCAGGCACGCCGCATGCTGTGGAACACCATTGTGAGCATCATCAGAGAAGGGAGAGCTGTGGTTCTCACCTCCCACAGG
s HiC_scaffold_1 168138146 110 + 233722169 TACAGGATGAACCAACCACAGGCATGGACCCGAAAGCCCGGAGATTCTTGTGGAATTGTGCTCTCAGCATTGTCAAGGAGGGGAGATCAGTAGTACTGACGTCTCATAGG

a score=5051
s chr3           122170924 101 + 160039680 ACAGCATGGAAGAATGTGAAGCTCTGTGTACGCGGCTGGCCATCATGGTGAAGGGCACCTTTCAGTGTCTGGGTACCATCCAACACCTCAAGTACAAGTGA
s HiC_scaffold_1 168138831 101 + 233722169 ACAGCATGGAAGAATGTGAAGCTCTTTGCACTCGGATGGCAATTATGGTCAATGGGAGGTTCAGGTGTCTTGGCAGTGTCCAGCATCttaaaaataggtaa

a score=5587
s chr3           122195513 181 + 160039680 ACGGGCTCTCCTCCCAAGATGCTCTCTGGAAGTGCCGTGCCAGTGAAGCAGAGAAGCATTGCTTAGGGAAACATCTTTCAAGGTTTTCCTCTCTGTTGATAATGTTGCCACACACCTCACCCCTTTACTGGCAATGTGCTTGCATCACAATTCTGAAATA----TTTTTCCTCCAAACACCACTC
s HiC_scaffold_1 100945888 174 + 233722169 ACGTTCCTTTTTCCAAAGATGCCCTTCTGAATTGCTGTTTCAGCAAAATGGAGAAGTACTATTTGGAGGGACCTCTTTCAAGATTTTTCT---TGTTGGTAATGTTCCCATGCATC-CTTTTTTTAATTGATAAT-------CATCTTAATATCAAAGTGATACTTTTCTCTCCAAATTCCATTC

a score=7854
s chr3           122197409 441 + 160039680 AAAGAGTAAATCAGGCACG-GTGGGAACATTGCGATCCAGAGATCTG--CAACAGAGGAGACATGGAAGACTGCCGCCGAGCTAACGTAGCCTACTGTTTTACAGGAAGCTTTTTTTATTTTCTGATGTAGAACAGCATCAGCAAAAACAACAATAAAAAGGATATTACAC---------CACATG-----------------CATGAATCAGTCATGC-----CGTCATTTATTATCA---TTCTCAGGTATTA-GTACATTACGTAATTGTG-GTTCTCTGTTTTTATTTGA-TGGGCCCAGAGTTGAGGTGTTTGTAGCAGCATCACCATAAATATGTAAGTAATGTTTTCTGCTGCAATCTTAGACTTACTATGAGATCACTGGGTGCCAAGGGTTTTCCAGCTCCAGTCTAGTCTTCCCAGA---CCATCATATACATGGCCTATCACTGACTAAAGTGCCAGTTTGT-GTGTATGATTG
s HiC_scaffold_1 183370587 452 + 233722169 AGAGATTAAATGAAGCACAAGAGAAAATAATGTGATCAAGAGATGTGGTAAACATGAGAGGCATAG-----------------------GCATACTGTTTTACTATAAACCTCCTT-ATT-----ATGTAGAGGAGCCATAGTC----TAAcaataaaaagtataataaatacacACTAGTACATGGTATGTATACATAAGTACACGAACCAGTACTATAAATACATAAAGCAGTAACACATTTGTCAAGTACTATGTACTGTACATAATTGTGTGTGCTATACTTTCATATGACTGGTAGCATGGTAGGTTTGTTTATACCAGCATCATGACAAATATGTGAATAATGTGTTGCATTATGGCATTATGATGGCTACAACAGCACTAGGCGACAAGAATTTTTCAGCTCTGTTATCATCTTACAGGACTGCCATTGCATCTGCAGTCTGTCATTGGCTGAAATGCTGTTGTGTGGTGCATAGCTG

a score=32592
s chr3           122229988 1269 + 160039680 ctcttTTTTTTTTTTTTTTTTTTTGTGGGTGCAGCGAACTTTATTGATGGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTCTGGAATGGAAATTGTG--------AGGGAGATGCTCAG--TGTTGGGGGCC-GAGTTGGGATAGGGCC---------------TCTCTCTTGCTCAGTGTCCTTGCT---GGGGTGGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGTCCACCACCCTGTTGCTGTAGCCGTATTCATTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGCAATGCCAGCCCCGGCATCGA-------------------------------------------------------------------------------------------------------AGGTGGAAGAGTGGGAGTTGCTGTTGAAGTCGCAGGAGACAACCTGGTCCTCAGTGTAG--------CCCAAGATGCCCTTCAGTGGGCCCTCAGATGCCTGCTTCACCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCGG--------CACGTCAGATCCACGATGGACACATTGGGGGTAGGAACACGGAAGGCCA-TGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCAC----CAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACGACCATCACGCCACAGCTTTC-CAGAGGGGCCATCCACAGTCTTCTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTGATTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGCGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGCCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCACGACATACTCAGCACCGGCCTCACCCCATTTGATGTTAGTGGGGTCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCGGCCTTGACTGTGCCGTTGAATTTGCCGTGAGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATCTCCACTTTGCCACTGCAGATGGCAGCCCTGGTGACCAGGCGCCCAATACGGCCAAATCCGTTCACACCGACCTTCACCATTTTGTCTACGGGACG----AGGCTGGCACTGCACAAGAAGATGCAGCTGTCTCTGGAACAGGGAG
s HiC_scaffold_1   9527068 1320 + 233722169 ctctgtattttttttctttttcttgt---ctcagcAAAGTAGATTTAAAGTA-------GATTAATCATGGATGAAAAAGACCCATCCTTTGTAA--GGAGTCTGTGGTAAAACCTATGCCAAAAAAGGGGAGATCCTCGGGGTGTTGAAGGACAGAGTTGAGCAGGGATCCATAGCATGAGACAgtctttctttcttactcttcCTTCTCCTGGAGCTGGTGATCC-GGAAGGCCCAATCCTTGGATGTC---------------------------TTTGTGTAGCCAGATTCATTGTCATATCTGAAGATGAGTCTAATGAAGTTGGCATT--------TCCCTGCCCCCTCACCAACGtttctatttttctatctatAAAGTTTCCCAAAGTGGttcttttgaataaaaaaaaaaaaaaaaaacaaaaaccaactatcctatttttttttttttccctaaagagGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAG-GATTCCTTTGAGCCCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATGGAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAGG-----------------TAAAGTAATT-ATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGTTC-TCAGGAGAAGGGGC---------------------TCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTCAGCACCAATATCACTTAGTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAG-TGTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGCTGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=48873
s chr3           122230007 1252 + 160039680 TTTTTGTGGGTGCAGCGAACTTTATTGATGGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTCTGGAATGGAA----ATTGTGAGGGAGATGCTCAG--TGTTG-GGGGCCGAGTTGGGATAGGGCCTCTCTCTTGCTCAGTGTCC---------------TTGCTGGGGTGGGTGGTCCAGGGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGTCCACCACCCTGTTGCTGTAGCCGTATTCATTGTCATACCAGGAAATGAGCTTGACAAAGTTGTCATTGAGAGCAATGCCAGCCCCGGCATCGAAGGTGGAAGAGTGGGAGTTGCTGTTGAAGTCGCA--GGAGACAACCTGGTCCTCAGTGTAGCCCAAGATGCCCTTCAGTGGGCCCTCAGATGCCTGCTTCACCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCGGCACGTCAGATCCACGATGGACACATTGGGGGTAGGAACACGGAAGGCCATGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACGACCATCACGCCACAGCTTTCCAGAGGGGCCATCCACAGTCTTCTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCATGGATGACCTTGGCCAGGGGGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGTGATTTGTCATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGCGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGCCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCACGACATACTCAGCACCGGCCTCACCCCATTTGATGTTAGTGGGGTCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCGGCCTTGACTGTGCCGTTGAATTTGCCGTGAGTGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATCTCCACTTTGCCACTGCAGATGGCAGCCCTGGTGACCAGGCGCCCAATACGGCCAAATCCGTTCACACCGACCTTCACCATTTTGTCTACGGGACGAGGCTGGCACTGCACAAGAAGATGCAGCTGTCTCTGGAACAGGGAGGA
s HiC_scaffold_1  97936679 1215 + 233722169 TTTTGGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAGCA------------TCTTTCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAGACACTTCCTCAGCTTAAAGCccctctcttttcatttcttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAGCC-AGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGCATA-----GGATGAT---CTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATCCA--GTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATAAA-TCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaa

a score=18372
s chr3           122230169 1121 + 160039680 GCTGGGGTGGGTGGTCCAG----GGTTTCTTACTCCTTGGAGGCCATGTAGGCCATGAGGT-CCACCACCCT----GTTGCTGTAGCCGTATTCATTGTCATACCAGGAAATGAGCTTGAC-----AAAGTTGTCATTGAGAGCAATGCCAGCCCCGGCATCGAAGGTGGAAGAGTGGGAGTTGCTGTTGAAGTCGC--AGGAGACAACCTGGTCCTCAGTGTAGCCCAAGATGCCCTTCAGTGGGCCCTCAGATGCCTGCTTCA-CCACCTTCTTGATGTCATCATACTTGGCAGGTTTCTCCAGGCGGCACGTCAGATC---------------------CACGATGGACACATTGGGGGTAGGAACACGGAAGGCCATGCCAGTGAGCTTCCCGTTCAGCTCTGGGATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGGATGATGTTCTGGGCAGCCCCACGACCATCACGCCAC---AGCTTTCC---AGAGGGGCCATCCACAGT--CTTCTGGGTGGCAGTGATGGCATGGACTGTGGTCATGAGCCCTTCCACAATGCCAAAGTTGTCA-TGGATGACCTTGGCCAGGGGGGCTAAGCAGTTGGTGGTGCAGGATGCATTGCTGACAA----------------------------------------------------------------------------------------------------------------------------------------TCTTGAGTG------------ATTTGT-----------------------------------CATATTTCTCGTGGTTCACACCCATCACAAACATGGGGGCATCGGCAGAAGGGGCGGAGATGATGACCCTTTTGGCTCCACCCTTCAAGTGGGCCCCGGCCTTCTCCATGGTGGTGAAGACACCAGTAGACTCCACGACATACTCAGCACCGGCCTCACCCCATTTGATGTTAGTGGGGTCTCGCTCCTGGAAGATGGTGATGGGCTTCCCGTTGATGACAAGCTTCCCATTCTCGGCCTTGACTGTGCCGTTGAATTTGCCGTGAGTGGAGTCATACTGGAACATGTAGACCAT-GTAGTTGAGGTCAATGAAGGGGTCGTTGATGGCAACAATCTCCACTTTGCCACTGCAGATGGCAGCCCTGGTGACCAGGCGCCCAATACGGCCAAATCCGTTCACACCGACCTTCACCATTTTGTCTACGGGACGAGGCTGG----CACTGCACAAGAA--GATGCAGCTGTCTCTGGAACAGGGAGGAGCAGAGAGCCccgacagagctcttaacaaca
s HiC_scaffold_1   3814669 1271 + 233722169 GCTAGGATTGGGGCTCGAATTCAGGACTCTGACTCCTTAGAGATCTTGTGAATCATAAAGTACCTCCACCCCCACAGTTGCTATGGCCAGATTCATGGTCATACCAGGAAATAACCTAACCGGAGTACAGTATTCACTCAGAGGAATACCCACCCCAG------------AAAAGCAGA-----CAGTAGATGTCACCAAGGCAACCAGCTATTCCTGTAAACAGCTCAAGGTGCCTTCCAG--GGCTCCATGACATTTGCTTCATCCCCCTTCTTGAT---ATTATATTTGACACCTTTGTCCCAGAGGCAGATTAAATCTATGTTTCATCAAACCCTCCACAAGCTCGCCACCCCGGGAATGGGCAGCTGGAAGGCCAATTCAATGAGCGTCCTGCTCAGCTC-AGAATAGCCTTGCACACGGCCATGGCGGGGTCAG-GGCTCCAGGGACAG------GGACTGC----------TAACGTTAACTGAGCTTGCTGGAAGAGGGGGCATTCAGAATAATTTCTGGGAGACAGTGATGGCATAGACCACAGCCTTAAATTCCTCCA-ATTACAGAAGTTATTAACAGTTGACACTGGCCAGGTGTCC--ACCCCTTGGTA-TgcaggtggcattgctgatatatgtatatatttttaatttgcaataCTGGGCCTTTCTGCATTCCCATCCCCTGCTTATATGTTTGAAAAAGTGTCTCTCTTAGTTGCTAAGTAGATACATCCTGGGCTTAAATTTCCAGTTCTCCTGTCTCatccttcctgagtgctaggattatggatgtgtgccaccatacccagccccAACAATCTCGAAGCAATCATCGTTCTCATAGTTCTCTCCTGTTCCAAGTATGTGG-CATCGACACAAGTGGTAGGGATGATAATACTTT-GGCTTCACCTCCGAAGCGGGTGCTGCCTATGGCTAAGATGATGAGGAGCACAGCGGATTGCAGCATGTGTTCAACATCG-CATCACT--ATCTGATGCTGGAGGGATCTTGCTCCTGAAAAGTGGAATTGGGATTCTTACAGACTGTA--CTTCCTCTTGTCCGCCTGGACAGCGCCATTGAACTTGCCATGGGCAGAATCATTTCTGAACATCTAGTCCACAGTA--TGaagtcaaggaaagagacattgaCTGCTGCAACATCCCCTTC---------AAAAGCAGCCTATGGAACTGG--AGCCAATACAGACAAATTCATT----------TGATTCATTTAGCTCACTGGAATGAGCTAAATATCATCACACCAATAGTGAGGCATCTGT-------------AGGTGTAGGGAGCTGTGAGAGAGCTGAGAACAACA

a score=7519
s chr3           122250632 154 + 160039680 CTTCTCATCTTTTTTGTTTAAGCACTTTATGAAAACATCATAAAGAGGACATCATCCTCTA-AGAGAGACTGAAAAGTTTGAGGGTTCTACTAGTTGTCTTGGGTCCCAGCTGCTGAAGCACAATAGTATCTGACAGTCCAGGAATACCATTATC
s HiC_scaffold_1  79514896 153 + 233722169 CCTTTTACCTTCTTTGTTTAAGGGCTTCCTGACAACATATTG--GCGAACATCATCTTCTTTAGAGAGATTGAAAAGTTTGCGGATTCTGCTTGCTCTTTTGGGCCCCAGGCGCCGAGGCACAGTAGTATCAGTCAATCCAGGAATATCTTTCTC

a score=4012
s chr3           122251088 83 + 160039680 CTTCCGCCCCTTACTCAGGTCATTGGCAGTAACTTCTGTGGCTATGTATTCCTCATAGAAAGTGCAGAGTTTGCATTCATTGT
s HiC_scaffold_1  79515842 83 + 233722169 CTTCCACTCTTCTCCTAGAGAGTCAGCAGCAACTTCTGTGGCCATACGCTTCTCATAGAACGTACGAAGTTTACGTTCATCAT

a score=10058
s chr3           122256824 327 + 160039680 CAGAAAACTTTC-GAGCTCTGAGCACTGGAGAGAAAGGATTTGGCTATAAGGGTTCCTCCTTTCACAGAATTATTCCAGGATTCATGTGCCAGGGTGGTGACTTTACACGCCATAATGGCACTGGCGGCAGGTCCATCTACGGAGAGAAATTTGAGGATGAGAACTTCATCCTAAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGACCAAACACAAATGGTTCCCAGTTTTTTATCTGCACTGCCAAGACTGAATGGCTGGATGGCAAGCATGTGGTCTTTGGG------AAGGTGAAAGAAGGCATGAACATTGTGGAAGCCA
s HiC_scaffold_1  82427398 318 + 233722169 CGGGAGACTTTCTGCAGCCTGAGTGCCCACGGAAAAGGCTATGGCTTCAGGGGAAGTAGCTTCCACCGCAACATCCACCAGTTCATGTGCCAGGGTGGGAATTTCACAAACCACAGTGCCACTGG-GGCAAGTCCATCTCCTGGAAGACGTTTGATGACGAAAACTTTATCCTTAAACACACAGGACTAGACCTCCTCGCCATGG-----------CCAAATAGCAACGGCTCCCAGTTCTTCCAGACCTCTGACAAGACAGACAGGCTGAAGGGCAAGCATATGGTGTTTGGGCCGATTGAGGTCCAGGGCAGCAAGGACG----GGAAACCA

a score=6605
s chr3           122542104 190 + 160039680 TTAGATATAAGTTACTGCACCTTTACTGCTTTTCTCTAGAGTAACATCTATGTATGTTGTGGGAACGTAGCCTTCTTCACCGTTCTGTCTCCGAGCTCTTGTCCATCCATCACCTTTGTCCTCCTCAATAATGTACAGAACTTCACCTTCTTTCATTGCCAGAGTACCTTCATTATGCCCTA-GGTGAAAA
s HiC_scaffold_1 190827998 191 + 233722169 TTAAATATAAGTCTTAGCACCTTTGGTGTTTCTGTCCAAATAGACCTCGACGTACGAGGTAGGCACGTAGCCCTCCTCATCCTCGCCCCTGCGGATGCGGGTCCAGCCGTCCCCCTTGTCCTCCTCGATGACGTACAGCGTCTCTCCCTCGGCCACCGAGATGGTGCCTTCGTTCTGACCTGCGGTGACAA

a score=5249
s chr3           122563829 119 + 160039680 CTTACCTTTTCAACATCTGCCTTGGTGGCATTGGTGTCATTATCCAACCTCTCATAACTCTGCTGTGCTTTCTCCGCTTCTCTACATTCTCTTTCAAACTTCTTTTTACTCTGTAAAGA
s HiC_scaffold_1 190853594 119 + 233722169 CTGACCTTCTCCACGTCGGCCTTGGTGACGTTGATGTCCGCGTCCATCTTCTCAAAGTACTGCTGGGCCCTCTCGGCCTCCCTGCAGTCCCGCTCGAATCGCCGCTTACTCTGCAGGGA

a score=5592
s chr3           122590122 154 + 160039680 CTTACCTCAATTGTTTCGCATAGTTCTGTTCAATTTCAATTCTCTCTTTAACAAACTTGGCATATCTTTCCAAGAAGTCAATTCCCCATTGGGTATGCTTATCTAAGCTGTCGAACTGATCCTAGAAAATGAAAGCAAGAACAGGCTCAACAAG
s HiC_scaffold_1 190870778 143 + 233722169 CCTACCTGAGCTGCTTGGCATAGCTGAGCTCGATCTCGGAGCGCTCTCGCACGAACTTGATGTACCTCTCCAGTACATCGATGCCCCACTGCGTGTGCTTCTCCAAGCTGTCAAACTGGTCCT-----------GCAGGGACAGAGGCCACAGG

a score=27264
s chr3           122632508 780 + 160039680 CTGCTTTCTCATCTATCCTAATACACTTTATTTGTTTGTTCTACCTGTGACTTGGCA---------TGAATTCTTCTCTTTTTCTTCTTATTTAGTTTTTATTCATAATCATAAACTTAACTTTGCAATCCAGCTAGACTTGAAGGGGAATGAGGAAAACATGGAACCCAAGA-ACTTCAGTGAGAGCAGAGATTACAGGACATTGCGAGCAGATGGG--GTAGGGACGCTCTACTGAGCTACAGAAGGAATGGTTT-GATGGGTAAAATGCCCACAAGTCAAAAGAAATTAGAGTTGTCCACAGTCGGAAATGGTGATCTTCTTGCTGGTCTTGCCATTCCTGGACCCAGAGCACTCCATTGCTTCAA------CATGACTTCTTTCACCTTCCCAGAGACCACATGCTTGCCATCCAGCTATTCGGTCTTGGCAGTGCAGATAAAAATCTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATCCTCAAATTCCTCCCCGTAGATGGACCTGCCGCCAGTGCCA-TGTGGTGTGTGACGTCACCACCCTGGCACACGAATCCTGGAATAATTCTGTGAAAGGAGGAAGCCTTATAGCCAAATCCTTTCTCTCCAGGACTCAGAGCATGGAA-GTTTTCTGCTGTCTTTGGAACTTTGTCTGCAAACAGCTCGAAGGAGATGCGGCCCGAGGGCTCATCATCGGCCGCGATGTCGAAGAACGAACATGGTAGGGTAGACCATGGCTGCAGCAAGC
s HiC_scaffold_1  72460607 751 + 233722169 ctgctttgctctttatt----tgtacttttggtGTTTActctaagagaaaccatgcaaaaCATAAGTgcgtatgtctttttttttaattatttaggttTTATTCATAACCATAAGTTAAACTctgcaaa----------------------aaggaaaatatggaacCCAGAACACTGCAGTTTCAGCAGAGATGATGAGGTGTTTTGAGCAGGTGGGTCGCAGGG-TGCCCTTCTGAGTGAGAGAA---ATGGTTTTGGTGATCGTGATATAAAGGAGTCACATGT-----GTGTTGTTCACGATCGGCGATGTTGATCTTTCTCCTGGTCCTGCAGTTTCCTGACCCGAAGCGCTTCATAGCACCCTGGAGTTCATATCCTCTTTCACTTTCCTGAAGAACATGAGCTTGCTTTCCAACCTCTTGCTTTTGGTAATGCAGATGAAAAACTGA-AACCCTTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCA---CTGAATTTCTCC---TATAGACACTTGCCACCAGTGGCACTGTGGCCTGTGACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAACCTAatgttttctctccagtgttcacagcaaaaaatgttttctgttgtctttggAAGTTTGTCTGAAAATAGCTCAAATGAGATGCAGCCCAAGGGCTTGCCAT-GGGCGTGATATCAA-----GGACACACTGGAGTTGACCACAGTTG--GCAGGC

a score=5673
s chr3           122632784 277 + 160039680 TTAGAGTTGTCCACAGTCGGAAATGGTGATCTTCTTGCTGGTCTTGCCATTCCTGGACCCAGAGCACTCCATTGCTTCAACATGACTTCTTTCACCTTC-------CCAGAGACCACATGCTTGCCATCCAGCTATTCGGTCTTGGCA-GTGCAGATAAAAATCTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATCCTCAAATTCCTCCCCGTAGATGGACCTGCCGCCAGTGCCAT
s HiC_scaffold_1 155171515 285 + 233722169 ttatagcTGTCCATATTCTGTGATACTAATTCTTCAACTAACAAAATATTTGGGAGAACCAAATGATTCAATCTTTTTCATAGTATCTGTATTATTCTCAACAAAACTAAATACCACATGTTTAAGATCCAAATGTTCTGCCTCATTTTGTGTTATGAAAAAACTGAGAATTATTCATATCCCATCCTCAACTGGACATAGATAAGAAGCCAGGGTCAGTGTGCCTTACATTAAAGTTTTCATCTTGAAATTTATCTTCATAAATGGACTTTCCTCCTGTCCCAT

a score=4249
s chr3           122743918 153 + 160039680 GGAAGAGGGATTCTTTGGGAAGAGAACAGGAATTAGCA---GGAGTGAGAGGAGAAGAAGGGTTATGTAGAGGTAACTATAATCAAAATATGTTATACGATGAATGATTGTGCCACAATGAAACCTTCATTGCATATCATTAATATATGCTAATAA
s HiC_scaffold_1 141067248 146 + 233722169 gaaaaattaattattagagaagaggaagaaaataagtgAGGGGAAAGAGATATAAAGAAGGGTAATGGAGAGAAGACCATGGTCAAAATATGTTAATGGATATATGAAATTACCACAGTGAAAC--TCAATGTTT--------TATAAGCCAATAA

a score=6331
s chr3           122960709 219 + 160039680 AGTCTGAAATGCTCCAAAATCTGAAATTT---GAGAGCTAATATTATTGCTATGAATGGTAAATTCTAAACCTAAGTTTATGTGATGAGCTCCATTTAAGATGCAGGCTCACTACAAATACTATATAAAATTTCTGTCAGGTTAT------ATATACGTTATATAAACAAATGAATTCCATATATAGCCTTAGCTTCCTCAAAACACATACTATATTACTTATATGTA
s HiC_scaffold_1 204967182 218 + 233722169 aatccaaaatactccaaaatctgaaactttagGAGTGCCAGAA----------GGATGGGAAATTCTACACCTGCCTTTATGTGATACATTGCAGTAAAAGTGAAGGCACACTATAAGCACTGTATAAATTTAACTTCAGGCTATCTCAGAAGATGCATCTGAAACATAAATGTCTTTCATGTTTACACTGGGGTTCTATAACCaagatatttcattatgtatatgta

a score=27235
s chr3           123043310 426 + 160039680 GTGAGCCTCCCAGGCACTTTCTTTGGACTCCCTGCTATTGAGCAAATTCAGACTGAAGATGTTGTGCAGCTTCTTGGGATGCATGCAATGCAAGTCCTCTTGGAAGTCCATCACAGAACGCAGTTGCTGGGACTGCCAGTGTGAAAAGAGCT---------TTCCGTCATGTTCCAGGGGGTTGTTATGCAGGTACAGTCCATTCTTGACTCAGGCTTGCAATTTCTGCAGGTCAGTCAGGGGCAACTTCTTCAGCTTGTTGGAGGACAGATCCAAGAGTGTAGATTTGGGTAATTTGTTCCCACCCTTGATCAGTTCCAGAGGAAAGTGAGAGGTCAGGTTCTGGCTTAAGTAGAGTTTCTGCAGCTGGGCCATGTCCTCGAAGGTATTCCGGTCCACCACCACAATGTGGTTATTGTAGAGcaatagcacttc
s HiC_scaffold_1 114949467 435 + 233722169 GTCAGCCTCCCAGGCACTCTCCTTGTACTCGCTGCAATTGAGAAAACTTAGGTTGAAGACATTGTGCAGCTCCTTGGAACGCACACAGTACAGATCCTCCTGAAAGTCCATCACGGAGCTCAGCTGCCGGTACTGCCAGTGTGAAAAGAGCTGATAAAGCTTGCAGTTGCATTCCAGGGGGTTGTTATGTAGGTACAGTCCATTCTTGATCCATGCTGGCAGCTTCTGCAGGTCACTCAGTGGCAACTTGTTCAGCTTGTTGGAGGACAGATCCAAGAGTGTTAGTTTGGGTAGCTTGGCTCTTTCGTTGACCAGTTCCAGAGGGAAGCGGGAGATCTGGTTCTGGCTCAAGTACAATTTCTGGAGCTGGGCCATGTCATCAAAGGCATAGCGGTCCATTGTCATGATATGATTATTGTAGAGCAGCAGCACCTC

a score=4500
s chr3           123391108 99 + 160039680 tctaGAAAACACAATAGCTAGAAGCCAGAAAGTAGGTGGCAGTGCCTTAACTATATGTGTGTTGTCAAGCCCACGGGCCTCTTTCATCCTCGTCAAGGG
s HiC_scaffold_1 111560039 98 + 233722169 tcTTAAAAAC-CAGTGTTTAGATCCCAAGAAATAGGAGGCCATGTTTTAATCATATGTGTATTGTCAGGCCTGAAAACATCTTTCATCCTTATCAAGGG

a score=38760
s chr3           123408450 1151 + 160039680 GCTACAGAAGCCCTTCCCCAGAGGGCTGAACTTTGACACAA----TGACAGTCTGAGGAACCATTGTGTGCA-------------------------------------------TCCAAATACCAGGCCCTTTAGGCACTT-GGGCTTGTCCCTGCTGTCACTGTGGAAGAGGTGA-TGCAGCTATGAATGCCAG-----ATCAAAGACATAGAAGACATGCAGAACCAGGGAG------TATAAAAGGAGATCCTCAGAGACAAGATGTCTTCTTCCCTGGGAAAAAGGTCTCTT----TGGTATTGAAGAAGATATTGGAGACTGTCACCTGCTCTCAAGGTGATGTTGGACAATGTAGGAGAGTTGAAGAGATTGAAATCACAA--GA--GGGGCCTTGCACGTTTCC----CCTTTGATGTCCAAGACCTCATGGATAAGATTGTCATTCAGAAATGCCGTGTTATGAATGGTCACACCTGTGAAGTCAGGAAAACCCCATGGAAGAAAGAGATGCCTCATCCGTC------AAACGGGTTAAAGTGGTTCTGGGAACCACTTTTTTTGTGGGTGTGG------TTTTGGTGGCACTGACAATTTTGGTTATGGAGGAAACTTCACTGGTCAAGGTCTCTTTGATGGTGCAGCCATGGTGGTGG-AGACGGCAGCAGTGGGAGTGGCCATAATGGATTGGGTATCTATGGAAGCCATTTTGGAGGTGGTAGAAGGCATTGTGCTTTTGGCAGTGGCAGCAGTCAAGTTTA--------------CGAAGGGAGAAAACTTCGTGGGCTGAAGCTCTGGCTGTTACTGTGATGGAGGCCAAGTCTTTGCCAAGTCACAAAGCCAGGGTGG----------ACCAGTATCAGCCA----TGTCTGTGGCAGTGGAAGGTTCTACTTACGGCCAGGAAACAGCTAAGCAGGGTAGGAGGAGAGTG---GAGAAATGACATGGAAGCTCCAAACTGCAACAGATTTCTGATATCAGACGAGCACAGTGCTAGCAGAACCTAGTTGCCAGGAAGGAGACACATTTTAGACAACGCTTCTGTGCCCTAGGACTACAGCCAAAAATCTGTAGGACTGTACTTTGGATGGGCTACGTAACAGGTTATTGTAGCTTGC-ATTCTGAAGAAAGTGTAAAACACTCCCCCAAAGG-TGTTAATGCAGACGTCTT---CACCTATGTTGTGGATTGCTAAATGCTGTAGCCTGATCATGTCGCTGAATAAATGCTTCTT
s HiC_scaffold_1 138522976 1240 + 233722169 GCTGTGGAAGCCCTTCATTGGACAGCTGAGCTTTGATACAACTGATGAATGTCTGAGAAGCCATTTTGAGTAATGAGGCACACTCACCAACTGTGTGGCCATGAGAGATGAGAGTTCCAAACACCAAGCGTTCCAGAGGCTTTGGGGTTGTCACTTATGCTACTATGGAGGAGGTGGGTGCAGCCATGAATACAAGGCCTCATAAAGTGGATGGAACAGTTGTAGAACCAAAGAAAGCTGTTTCAAGAGAAGATTCTCAAAGATCAGGTGCCCACTTAACTATGAAGAAGATCTTTGCTGGTGGCATTAAAGAAGATACTGAAGAACAGTACCTA-----AAGGTTATTTTGAACAGTGCAGAGAAAATGAAGTGATTGAAATCATGACTGACTGAGGCAGTG---GTTTTTGTAACCTTTGATGACCATGATTCTATGGATAAGATTGTCATTCAGAAATACCATACTGTGAACGGCCACACCTGTGAAGTAAGGAAAGCCCTGTCAAAGCAGGAAATGGCTAGTGCTTCATCTAGACAGAGGTCTGAGTGGTTCTCGAA---ATTTTGTTGGTGGTTATAGAGGTTATTTTGCTGGAAATGACAATTTTGGTCGTGGAGGAAACTTCAGTGGTCAAAGTGGCTTTGGTG--GCAGCTGTGGTGGAGGTGGATAGTGACTGTGAGGATGGCTACAATGGACTTGGTAATTATGGAAGCAATTATGGAGGTGGTAGAAGCTACAATGA-ACCGGCAATTATAGCAATCAATCTTCAAATTTTGGACCCTTGAAAGGAGGAATCTTTGGAGGTAGAAGCTCTGGGTGCTTCGGTGGTGGAGGCCAATACTTTATCAAACCATGAAATCAAGGTGATGATGGTGATTCCAGCAGCAGCAAAAACTGTCAGTGGCA---GAAGGTTTTAAATACTTCCAGGAAACAG---AGCTTGGCAGGAGAGGAGAGCCAGAGAAATGACAGGGAAGCTACAGATTACAACACATTTGTGAACTCAGTTAAGCACAGTGAT-GCATGGCCTTGCTGCTACAAAGAACATGTGTTTTAAACAATACTCGTG-----------TACATTCAAAAAACTTGAGGCCTGTGTTTGTGACTCATTGTGTAACCGGTTACTTTAGATTTCTGTTCTGTGGAAAGTGTTACGCATTCCAACAAAGGATTTTAATGTAGACTTTTTTTGCACCCATACTATTGATTGCTCACTGCAATTGTCTGAACATGAAGCTGCATAAATGTGTTTT

a score=23393
s chr3           123408656 946 + 160039680 GATGTCTTCTTCCCTGGGAAAAAGGTC-TCTTTGGTATTGAAGAAGATATTGGAGACTGTCACCTGCTCTCAAGGTGATGTTGGACAATGTAGGAGAGTTGAAGAGATTGAAATCAC----------------------AAGAGGGGCCTTGCACGTTTCC---CCTTTGATGTCCAAGACCTCATGGATAAGATTGTCATTCAGAAATGCCGTGTTATGAATGGTCACACCTGTGAAGTCAGGAAAACCCCATGG-AAGAAAGAGATGCCTCAT--------CCGTCAAACGGGTTAAAGTGGTTCTGGGAACCACTTTTTTTGTGGGTGTGGTTTTGGTGGCACTGACAATTTTGGTTATGGAGGAAACTTCACT----GGTCAAGGTCTCTTTGATGGTGCAGCCATGGTGGTGGAGACGGCAGCAGTGGGAGTGGCCATAATGGATTGGGTATCTATGGAAGCCATTTTGGAGGTGGTAGAAGGCATTGTGCTTTTGGCAGTGGCAGCAGTCAA--------------GTTTACGAAGGGAGAAAACTTCGTGGGCTGAAGCTCTGGCTGTTACTGTGATGGAGGCCAAGTCTTTGCCAAGTCACAAAGCCAGGGTGG----------ACCAGTATCAGCCATGTCTGTGGCAGTG---GAAGGTTCTACTTACGGCCAGGAAAC--AGCTAAGCAGGGTAGGAGGAGAGTGGAGAAATGACATGGAAGCTCCAAACTGCAACAGATTTCTGATATCAGACGAGCACAGTGCTAGCAGAACCTAGTTGCCAGGAAGGAGACACATTTTAGACAACGCTTCTGTGCCCTAGGACTACAGCCAAAAATCTGTAGGACTGTACTTTGGATGGGCTACGTAACAGGTTATTGTAGCTTGCATTCTGAAGAAAGTGTAAAACACTCCCCCAAAGG--TGTTAATGCAGA----CGTCTTCACCTATGTTGTGGATTGCTAAATGCTGTAGCCTGATCATGTCGCTGAATAAATGCTTCTTT
s HiC_scaffold_1 100110949 951 + 233722169 GGTCCCTGCTTAACTATTAAAAAGATCATGATTGGT-TTAGTGAAGACACTGGAAAGCATCATGT-------AGGAGAT--TAAACATCATGGGAAAATTAAAGTGATTACAATCACGACTGACCAAGGTAGTAGCAAAAAGAGAGGATTTGC---TTTCAGAACTTTTGATGACCATGATTCTGTGAATGAGATTATCATTCAGAAATACTGTACTATGAATAGCTACCAAGCTGAAGTGAGAAACACCTCACAGCAAGCAAGAAGTGATTAGTGTTTTGTCTAGTCAAAGAATTCATAGTAGTTTTGCAAAC------TTTGATG---GTGACTGTAGAGGCAATGACAACCTTGGTTATGAAGGAAACATCAACATTAGGACAAG---------------------TGGTGGTGATTATGGTGGCAGCATGGACAGCTACAATGGATTTGGTAACAGTGGAAGCAATTTTGGAGG-AGTAGATGCTACAG------TGGCAATCACAACCATCAATCTTCAAATTTTGGATCTGTGAAGAGAGCAAACATTGAAAGCAGAACCTCTGGCCTCTATGGTGATACAGGCCAATACTTTGCCAAACCATAAAACCAAGATGGTTATAGTGGTTCCAGCAACAGCAGAAGCTATGGCAGTGACAGAATATTTTAGTTACTGCCAGGAAACAAAGTTTAGCACAGCAA---------GTCAAAGTAACAGAGAAGCTTCAGGTTACAACAGATTTCTGAATTCAGCCAAGCACAGTG---GTGGGGCTAAGACGCTGCAAAATAGACATGCTATGAACAATACTCAAGTAT----GGGCAAAAG---AAATTGCTGAGGACTGTATTTGTGAATAACTGTGTAACAGGTTATTTTAGTTTCTATTCTGTGGAAAGTGTAAAGTATTCTAACAAAGGATTTTTAATGTAGATTATTTTTTACACCAAGGAAGTTAATTGGTAAATGTAACAGTATAATTGTGACACTGAATAAATGTGTCTTT

a score=20998
s chr3           123408732 916 + 160039680 ATGTTGGACAATGTAGGAGAGTTGAAGAGATTGA-AATCAC----------------------AAGAGGGGCCTTGCACGTTTCCCCTTTGATGTCCAAGACCTCATGGATAAGATTGTCATTCAGAAATGCCGTGTTATGAATGGTCACACCTGTGAAGTCAGGAAAACCCCATGGAAGAAAGAGATGCCTCATCCGTCA--------AACGGGTTAAAGTGGTTCTGGGAACCACTTTTTTTGTGGGT-------GTGGTTTTGGTGGCACTGACAATTTTGGTTATGGAGGAAACTTCACTGGTCAAGGTCTCTTTGATGGTGCAGCCATGGTGGTGGAGACGGCAGCAGTGGGAGTGGCCATAATGGATTGGGTATCTATGGAAGCCATTTTGGAGGTGGTAGAAGGCATTGTGCTTTTGGCAGTGGCAGCAGTCA--------------AGTTTACGAAGGGAGAAAACTTCGTGGGCTGAAGCTCTGGCTGTTACTGTGATGGAGGCCAAGTCTTTGCCAAGTCACAAAGCCAGGGTGG-------------ACCAGTATCAGCCATGTCTGTGGCAGTGGAAGGTTCTACTTACGGCCAGGAAACAGCTAAGCAGGGTAGGAGGAGAGTGGAGAAATGACATGGAAGCTCCAAACTGCAACAGATTTCTGATATCAGACGAGCACAGTGCTAGCAGAACCTAGTTGCCAGGAAGGAGACACATTTTAGACAACGCTTCTGTGCCCTAGGACTACAGCCAAAAATCTGTAGGACTGTACTTTGGATGGGCTACGTAACAGGTTATTGTAGCTTGCATTCTGAAGAAAGTGTAAAACACTCCCCCAA-AGGTGTTAATGCAGAC-GTCTTC--ACCTATGTTGTGGATTGCTAAATGCTGTAGCCTGATCATGTCGCTGAATAAATGCTTCTTTTAAAAGTAGAAGTATAGTATAATTAATCGTGCACATTTTTATGTAG
s HiC_scaffold_1  21080974 922 + 233722169 ATTTTGAACAATATGGAGAAATCGAAGTCATTGAGAATCATGACTGACCGAAACACTGGAAAGAAAAGGGGCTTCGCTTTTGTAACCTTTGTTGACTATGATTCTGCAGACAAGGCTGTGATTCACAGATACCAGACTATCAACGGCTACAGGTGTGAGGTGAACAAAGCCCTGTCCAGGCAGAAGATGGCTAATGCTTCATCTAGCCCAAGAGGTCCACATGATGCTGGAAA----TTTTGGTGGTGGTCGTCGAGGTGGTTTTGGTGGCTCTGTCAGTTGTGGTCGAGGAGGAAACCGCAGTGTTCCAGGTTCCTTTGATGGCACA--------------------------GGGATTCACTACACTGAAATTGGTA---ATGGAAGACATTTTCAAGTGGGCGGAAGCTACACTGGTTTTGTCAGTTACCACAGCCAACCTTCACACTATGAGCTCATGAAGAGAGGAGCATCTGGAGGCAGAAGCTCCGCACCCTGTGTTGGCAGAGGCCAATATTTTACCAAACCACGAAATCAAGGTGGCAATGGTAGCTCCAGCAATAACAAGAGCGTTAGCAGAGGCAGAAGGTGTTAAATACTGCTGG----CAGCAAAGCTCAGCAGAAGAGAGCTTGAGAAGTGAGAGAGAAGCCACAGCTTACAACAGACAGCTGAACTCGACCAGGCATAGTGGTGGCAGAGCCTTGCTGCT---AAGAAGACATGTTGTAGACAAGGCTCATGAGTATGGACAGGACACTCA-----CGATATGACTAT------------CTGCAGAACAGGTTATTTTAGTTTCTGCTCTG--GAAAGTGTAAAGCATTCCAACAATGGGTTTCCATGCAGACTGTTTTCGTACCTGTGTTGTTGATTGCTACATGTAACAGTCTTATCATGACActaaataaatg--tctttaaaaa--aaaactttcctatGGCAAAGAGTATGAATATTTATAAAG

a score=16034
s chr3           123509940 591 + 160039680 TTAGTTTTCGGCCCCCTCTGCTGCATCACATTCTTCTGCACTGTCTGATGTCCATAATGTTAAGTTGTCTCTAAGCAACTGCATGATAAGGGTGCTGTCTTTGTAGGAGTCTTTGTTCAGTGTACCAAGCTCTGTGATAGCCTCATCAAAAGCCGTTTTAGCCAGTGTGTAGGCAAGCTCTGGATTATTAAGGATCACAGAGTAAAATACAGGAAGGTTAAGAGCCAGCCCCAGGCGGATTGGATGTGTAGGTTGCATCTCTTTCTTGCTTATATCAAATGCCTCTTGGTAGGCTCTTTGGGAATTTTCTATCATTTGTTTTCCATCATCGCCACAAGCTACTTCAGCAAGATCCTGGAAATAATCTCCATTCATTTTCAGATAGAAGACCTTACTCTCTGGATTAATTGCATTGGCTATTAAATACTTACCCAACAATTCCAGAACCGTGATGCAGATGGACCTCAGTTCCAACTCCACTTTCTCCTGACAGTCCTTGGTCAGCTGCAACTTCTTGTTGGAGGTGTCGGTCTTCTTCTCAATGCTCGAGATGACCATCCAGGCAGACCTGCGGCCCTCAACCACGTTCTT
s HiC_scaffold_1  67869376 587 + 233722169 TTAatcttcctctcctcctgcttcagcttcatcTTCTTGGGAAGCTGATGTCCACAATGTCTAGTTGTCTCTCAGTAATTGTGTTATTAGTGTACAGTCCTTGTATGACTCCTCACTAAATGTATCAAGCTCAACAATGGCTTCATCAAAAGCTACATTTGCTAGAGAATGGGTTTTAACTGGAGAGTTCAGAATCTCATAATAAAACATAGAGTAGTTGAGGGTCAGACTCAATCTGATAGGATGCATTGGTTGCATTTCCTTTATCCTGATTTCAAA-AACTTTTGGTATCTTTGTTGTGACTGCCCCACAATCCCTTTCTGGTCATCACCAGCAGCAACCCCAG-ACAATAACAGTAGTAGTCTCCTTTcgttttcaaataaaatgc--tgCTCTCTGCTTGTGAAGCACTGGGGATCAAGAACTTTTCCAAAAGAGATAGTACATTGTTGCAGGTAAGCCTTAGctcagcctcagttttctctctgtgttcttGAGCCATCTGCTGCCCTGTCTCAGCACCTTCCATCTTTTGCTCAGTGCTTGAGACAACCTTCCAAGATGAACTATAGGCTCCTGTAACATTTTT

a score=19419
s chr3           123761299 632 + 160039680 CTCTGGTGGCAGCCATTAGGCAAGCCAAGATGGGTGCATACAAATACATCCAGGAGCTATGAAG--------------AAGCAGCCCGACGTG--ATGTGCTTTCTTCTGAGTGTCCTCTGCTGACAACACCACCAGCACTCTGCGCTGCACAG-GGCTCCCTGACCCACCCGGCCTGATAAAGCGCAAAGTCTGGGATACAAGGCTAAGCAAGGTTATGTCATTTACAGGATT--TATATCCACCACGGTGGTTGCCAGCGCCGGGTTCCTAGGGATGCAACT---------------------------TACAGCAAGCCTGTCAACCATGGTGTTAACCAGCTGACATTTGCCCAAAGCCTTTAGCCTGTTGCTGAGGAGAGAGCTGGGCGCCATTGAAGGGCTTTGAGAGTCCCGAATCTCTACTGGGTTGGTGAAGATTCCA----------------------------------CATATAAATAT------------------TTCGAGGTTATCCTCATTGATCAGTT-CCATAAAGCTATCAGAAGAAATCCTGACACCCACTGGATCACCAAACCAGTCTACAAGCACAGAGAAATACATGGGTTGACATCTGCTGGCTGAAAGAGCCTGGCCTCAGAAAGGGCTACAAGTTCCACTAC------ACAGTTGGTTCTCGCCGTGCAGCCCA-GAGAAGGCTCAATACTCTCCAGCTCCACCGTTACCA
s HiC_scaffold_1 218703612 730 + 233722169 CTCTGGGAGGAACCATCAAGTAAACTATGATGGGTGTGTGCAA-TGCTTCCAGAAGCTGTGGAGGAAACAGCAGGAGGAAGCAGCAATGCATACAATGTGCTTTCTTC-AAGGATAAGCTGCTGACCATATCATCAGCTGTCTGTGGCCCACTGTGGCTCCTTACCCAACGTAACCCACTAACATTGGCAAGCTGAGATACAAGACCACACAAACTTATGGCATAGATAGGCATCCTGTGTACATCCTCGTGGTTGCAAACACCCAGTTCCAGCTGGTACAGCTACGGCAAACCTGTCCAACTGGTACAGCTACGGCAAACCTGTCCATCACGGTGCTAACCAGTTGAAGTTTGCTCAGAGCCTTTTGCCTGTTGCCAAG--GAGAGTTGGATGCCACTGTGGGGCTCCAACAGTCCTAAATTCTTACTGGGTTGATAAAGATTCCAGGAAAGAACACATCCTACAAAAATAGCCAAGTTTCAAATAGACATTGACTGGGTTCCAGATTCTTCGGAGTTATGCTTATTAATAGCTTATCATAAGACTATC---AGAAATGGTGATACTCAGAAGATCACTAAGCCAATTCACAA-TACAGGGAAATGTACAGACTGACTTGTGCAGGCTGGAAAGCTAAGGCCTTGGGAAGGGCCAGAAGTTCTATCACACTACTACAGGTGGTTCTCACTGTGCAGCGTATGAAGATGTGGCATGCTCTCCATTTGCACCATTACTA

a score=7356
s chr3           123761302 151 + 160039680 TGGTGGCAGCCATTAGGCAAGCCAAGATGGGTGCATACAAATACATCCAGGAGCTATGAAGAAGCAGCCCGACGTGATGTGCTTTCTTCTGAGTGTCCTCTGCTGACAACACCACCAGCACTCTGCGCTGCACAGGGCTCCCTGACCCACC
s HiC_scaffold_1  26824734 142 + 233722169 TGTTGTCAGCCATCAGATGAGGCAAGACGGGTGCACACAG-TATATCCAGGAGCTATGG-GAAGCAGTCAGATGTGATGCGGTTTCTTCTGAGGGTCTACTGGTGACAGTCCCACCAGCGCTC-------CGTAGGACTTTCTGCCCCACC

a score=4793
s chr3           123838537 92 + 160039680 CTCTCTGCTCCTATTTGAGATGTGACCATTTCTTTCCACACACTCACCTGCCATGCTGTGCCACCACCTGCTACTCTCATCAGAAGCCAAGT
s HiC_scaffold_1  98676890 92 + 233722169 CTCTTTGCTCCTATCTGAAATGTGACCACTTTTTCCTCTACACATTTCTATCATGATATGCCACCTTCCACCACCCTCACTAGAGGCCAGAT

a score=7812
s chr3           123984074 120 + 160039680 TTTATTTGTTACTCTTAAACACTT-ATTTTTGACTGGACTCAGACTTAGAGATAGAAGCTCTCAGTGAGGACAGCCTCCAGTTCTTGGCAATCTGTTCCTGGCCCTTTTCTTTGGCTTCTT
s HiC_scaffold_1  79513383 119 + 233722169 TTTATTTGTTACT--TAAGCATTTTATTTCTGACTGGACTCAGACTTAGAAGTAGAAGCTCTCAGAGAGGAAAGCCTACGTCTCTTGGCAATTTGTTCCTGGCGTTTTTCTTTAGCTTCCT

a score=4573
s chr3           123984488 110 + 160039680 AAAAAGTTTAGCATATTCCACAGCCTC----------TTCCTCGTGCATTGACTC-------------------AATTGTGTT--AGGGCACACGAAGTAACAAGATACTGATTCTGGGGTACTTTGGTCCTGGGATTCTT
s HiC_scaffold_1  79513610 141 + 233722169 AAGAAGCTTAGCATATTCTGCAGcctcctctttgtttttcttagtaCGCTGCTTCTTCAGAGCAATACGGCGGCGCTTGTGTTGGAGGACACGCGGAGTAACAAGACGCTGAATCTTAGGGGCTTTAGTCCTGGGTTTCTT

a score=8948
s chr3           123984595 379 + 160039680 CTTCTTTGTTTAAGGGCTTTCTGACTACATATAGGTCCACATCATCTT---TAAAATGACTGAAAAAATT-CAAATTCTGCTAACCCTTTCTGGCCGCAACTGCCAAGGCAAAGTAAGTAGTAAGTAGTAAGTTCAGGActctctctctctctct--------------------------------ctctctctctctctctct----------------------------------------------------------------------------------------------------------------------ctctctctctctctc-----CCAAGTTGAGTAC--TCACATTGGAATCTATGTTAAAACTGGCAACAGATTTGCACTTCCTCTCTCCAACTGTCGGTGGTCTATAACAGGAATGCCCA-TATTCAGCAGCAGGTATGCTCCTGTGTGGGTTAAGTCATATTGCTTCATGGAAAAGCCTTGTTTTCCATTCCCATGACTGATTCTGACGACAGGATCCT
s HiC_scaffold_1  79514904 536 + 233722169 CTTCTTTGTTTAAGGGCTTCCTGACAACATATTGGCGAACATCATCTTCTTTAGAGAGATTGAAAAGTTTGCGGATTCTGCTTGCTCTTTTGGGCCCCAGGCGCCGAGGCACAGTAGT-----ATCAGTCAATCCAGGAATATCTTTCTCTCCTTAGAAGAGACAAATGTAAACAGAAGTATTTCAGTTCAGTAATTTCCTTTGTAACATTGAAATGATCATTTACAAGGGTACTTGTAAAATACACTGGTTAATATGCAAACACCGTAAAGGAAAAAACACCTGTAAGTCATCAACAAAAACTAAACGTGAAGAGCATAAACCTCAcctttttttacaataaccaAGTTGAGAACGCTCAGATTGGCATCCACAATGCAACCTCGGACAGATTTACGCTTTCTCTCTCCGGTTCTCCTTGGTCTATAACAGGAATGCCCCTTGCTCAGTAGCAAGCGAACTCGGCCATGAGTCAAGACGCCTTGCTTCATAGGGAAACCTTGCTTGTCGTTCCCACCACTGATCCGGACCACATAACCCT

a score=3757
s chr3           124340622 129 + 160039680 TTTAGAATTATAAGAATCAGAATTTTCTCTGAGTCACTTAAAATGAATTGGTTTGTATGACTAGAGTGTTCTGGCTGCTACTTTATAAGTTG-TTTGTAATTTTTTCCCCAAAAACAGCAagagagagag
s HiC_scaffold_1  63531844 130 + 233722169 TTTAACATTATAATGAACCAAGTTTTCTTCAAGTCACCTAAAAAGAATGAGTCAGAGTGACTTGGAGGTTTTGACTGATTCCTTTTAAGTTTCTCTGTAGCAACCTTGgctgaaatgaaaggaaaaagag

a score=49397
s chr3           124385489 1202 + 160039680 GTTTCTTAAAAGAGGAACACACTGGCTGCTCCGAAAAGCCATCTTTGCATTGTTCCTGGGTCGTGCTCCGCGCTCGCTGCAGCCACCTTCGCCGCCCACCGCCTCCTCCAGCCAGAGTCCTCGAACTCGACTTTAATTCCC----TCACTCGCGGCATCGGACCACCGGCGTGCCCCACCATGTCAGACGCGGCAGTGGATACCAGCTCCGAGATCACCACCAAGGACTTGAAGGAGAAGAAGGAAGTTGTGGAGGAGGCAGAGAATGGAAGAGATGCACCTGCCAATGGGAACGCTCAAAATGAGGAAAATGGGGAGCAGGAGGCTGACAATGAGGTAGATgaagaagaggaagaaggtggggaggaagaggaggaggaagaaggtgacggtgaggaggaggaTGGAGATGAAGATGAGGAAGCTGAGGCTCCTACGGGCAAGCGGGTAGCTGAGGATGATGAGGATGACGATGTGGACACCAAGAAGCAGAAGACCGAGGAGGATGACTAGACAGCAAA-AGGAAAAATAACCTTACG--CACCGTGACCTATTCACCCTCCACTTCCCGTCTCAGAATTTAAACGTGGTCACCTTCGAGTAG-AGAAGCAGGCCCCG------------------------CCCGCCCACAGCGGGCAATGCCACCCACAGATATGACATGCGCTCTCCACCACCC--------CTCCAAAACTACAACATGAATTGGCAACATGGGAGGAAAAAAGAACCAGAACTTCCCAGGCCCTACTTTTTTT-CTTAAAAATACTTTA-AAAGGAAAATTTGTTTGTATTTTTTATTTACATTTTATATTTTT-GTACATATTGTTAGGGGTCAGCCATTTTTAATGATAACGGGTGACCAAACCAGCCTTCAGAGCGTTTTCTGTCCTACTTCAGACTTTACTTGTGGTGTGACCATGTTCATTATAATCTCAAAGGAGAAAAAAAAAACCTTGTAAAAAAAAGCAAAAACAACAACAAAAAAACAATCTTATTCCGAGCATTCCAGTA--------------TGTACCTAGCTGTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAAAGATTTTTTTTTTCCTTTTCTTTCT----GTCTATGAAGTTGCTGTTTATTTTTT----------------------------------------------------TTTTGGCCTGTTTGATGTATGTGTGAAACAA---TGTCCAACAATAAACCGGAATTTTATTTTGCTGAGTTGTTCTAACaaaaaaaaaaaaaaaaa
s HiC_scaffold_1 106208899 1203 + 233722169 gttctatcaaaaaGAACCCCATTGGCTACTG-AAAAAGCCATCTTTGCACTGTTCCCTGACC------------------AGCTCCCTT---------------------GCCAGAGCCCCC----CCAACTCTCGCTTTCCTGCTCACTCAGTGCACTGATCCACCAGGATGTCTCACCAGGTCAGACGTGGC-TTGGACACCAGCTCCCAGATCACCACCGAGGACCTGAAGATG------------GTGGAGGAGGCGGAGAATGGGCGCGA--CACCCGTCAACGGGAACA---GGAGCGAGGAGAATGGCAAATGAGGGCCTG-CAAtgaggtagaggaggaggaggaggaagccagggaggaggaggagaacagaga---------------------tgaagaggaggaggaggaggcagaggcagctaCGAGCAACCGGGAAGCTGAAGATAATAAGGATGACCAGGTGGACACCAAGAAGCAGAAGATTG-GCAGGATGACTAGACAgcaaacaggaaaaattataaaaaggccACCGTGACCTATTCAGTCTCCACTTCCCATCT-AGGCTCTAAACCTGGTCACCTTCACTTGGGAGAGGCCCGCCCCCGCCCCCCCTCCACCCCGCCCCCACCCCGCCCTCCACGGACAGCGACCCCTGCCGAG--GACAC-CACTCTGCACCACCCGGGGAGCCCTCCAGGA---------GAATTTGCAACA-GGGAGGAAAAAACAACCACAACTTCCAaggccctgcttttttttcttaaaagtactttAGAAAggaatatttgtttgt---ttttatttacactttatattttttgtacATATTGGTTGGGGTCAGCCGGTTTTGATGATGA-GGATGACCCAACCGGCCTTCGCAGCCTTCTCTGTCCTCCTTCCAGTGGTGTGACCAGTGTGACCGTGTTCACTACAAcctcaaaggagaaagaaaa--ccttgtttaaaaa-gcaaaaacaa---------aacaatcttatTCTGAGCATTCCAGTAACTTTTTTTGTGTATGTACTTAGCCGTACTATGAGTAATTGGTTTGCATGAGATGGTTAAAAAGGCCAAcgagaaaagatttctttttttcctttttttttttttaatctatgaagttgctgttggttttttggttttttggttgttttgttttactttgattttttttttttttttttttctgttttggcctGTTTGATGTATGTGTGAAACAGTGTTGTCCAACAACAAAccagaattttattttgctgaggtgttctaaaaaaataaaaataaataa

a score=7268
s chr3           124501574 132 + 160039680 CTATCCATGGAGGTGTTTCAGGTGTGGCTGCTGTGTCACACATGAGTCAGTAGGTGGCAGAGTGGAGAGAGGC--TGTCTACCCTCAGTGTTCTGATCTGTGAGCATCTGAATGATGAGCAGCCTAACATTTCC
s HiC_scaffold_1 194511548 134 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=37484
s chr3           124587988 1291 + 160039680 TCCTTTTTTTTCTCTTTTTCTAATAAAAAACTTGTATTTACTTAGAAGCATTCAGAATGTCAACGAAACAGCTGCAAATTTTTTTTTTTTTTGCAATTACAGAGTGGTATTCATTTAACAGAACAACAATTATCTTCGTATAAGCTGCATCAGAGACAACTGAAGATGAAAAAAATAAAACCAAAAGAAAAAAAAAACCAACTGTCCCTGTATATAACTAATTTGTGCTGTACACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCTAGACTGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAGGGCTATCTAAAGACACATTTGGTAGTGTGTTAACTATACAAAAAAAAAAAA-----AAAAACAC-ACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACATTTCAATTTTTTTCTTTAAAAGAAGTGAGTTGTGTGTGTGGGGGGGGGGGGGGTAAATGCTTTATAGACAAGAAAACAAACTGCGCTAGAACCAACT-------------------------------------------------------------------------------------------------------------TATTCATTATCACCAtcttcttcattttcatcttcctcttcttcctcgtcctcatcctcttcatcctcct----------------------------------------------------------------------------cctcatcttcctcttccttctttttcttGCTCTTTTCAGCCTTGACCACCCCCCCCTTTTTCACTGCATCAGGTTTTTCTTTAGCTCTGTAGG---CAGTAATAGCCTTCTCGTACTTCTCCTTCAGCTCGGCAGCCTTCTTCTCATAGGGCTGCTTGTCATCCGCTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTGGGGGTGGTACTCAAAACAGAACAAGAAGAAGGCTGAAGGAGGCCTCTTGGGTGCACTGGGGTCCTTGAGCTTCTTTTTGGTCTCCCCTTTGGAGGGGAATGTAGCTTTTCATTTCTCTTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTCCAAGTTTCCTCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGA---ACGCTGAGAACTTGACTGAAGCATCCTGGTGCTTCTTCTTGTGCTCCTCCTAGCAGGCAGATTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCAGTTTCTTAAGATC--CTTTGCCCATGTTTAGTTGATTTTCCTCCGTGAGGCACAGAGTCACCCAGTGCCTGCCCGGCTCTCGCTTGCCCCGGAGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTGTGAGAGCGGGAGCCAGAA
s HiC_scaffold_1  13381276 1297 + 233722169 tccatctATCTCTTTTTGCCTAATAAAAA-TTGGTATTTACTTAGAAGCACTGAGAATGTCAAC-AAACAGGTGCAG------TTTCCTTTTGCAATTACAGAGTGGTATTCAGTTAGCA---CAACAGTTATTTT-GTATAAGCTGCAGTGGAGAAGACTGA----------------------------------------GTCCCTGTAGATAACTAATGTGTGCTGTGCACCAA---GAACCTGCTCCGAGTTCCCGTGCTGACTTACAGCCCCCA-CCTGTGCCAGCCA--GTGAGTG-CTACTGAAAACACCACCAG-CCTGGGCTGTCTCCAGAC-CACTTGGGAGTGTAT-AAATGTacgaaataaataaataagtaaaataacgACAGTACAGGTTAAAA-------------------------CAATCTTCT------------------------------------------------------------------AGCTG----ACATTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTCATCATCATCACCTtcatcttcctcctgctcctcctccgtctcttcatcttccttctctttcttcttttgttattttttattttggtacaagAATCAAGTGAACAGAGAggctacttgccaggcaggcgctgtgctgctgagccgtGTCCACCTCGCTCTCCTGttcctctctgctctctgcctTGACA---TCTCCCTGTTTTGCCGCACCAGGCTTT-CTTTAGCTCGGTAGGAGGCAGCGACGTGCTTCCTGTGTTTTCCCTGCAGCTTGGCA-CCTTCTCCCCA---GGCTGTGTGTCACCTGCTGCAGTGTG--CCCACTTGTCTTCCAGTTTCACAGCGACATCACCCCTGGAGAGGCCAGGATGTTCTCCTTTGAGTTTTGGGTGGCACTCGGAAGAGAATAAG-----GTCTGA--GAGGCCTCTTAGGTGTGTTGGGATCCTTGAGCTTCTTTTGCACTTCTCCTCT--AGGGGAacacacattttcatttctctttcacaGCAAGCCTTGTCCACCTTTGCTATGTCTTCAAATTGTC------CTTCAGCAGACGTGACCTTCCACCTCTCTG-GCACATCTTAAGAAGAAACTCTGAGAAGTCAGTGGAAACATCTGGGT---TCTTCTTGTGCTCCCCTCTGCAAG----TTCACACAGAAGAGGCCTATGAGGACATTT-GCCCCTTGCCCTCTTAGCATCTCCTTTGCCCAAGTCTACTTG-TTTTTTTCTGGGATGCACAGATTCTCCCAGTGCCCATCAGGCTCTCACTTGCCCTGGTGCCGTCTCTGTGGAGCTCAATGTACTGCAACAGCTG-GAGAGTAGGAGTCAGAA

a score=41089
s chr3           124588066 1186 + 160039680 TTTTTTTTTTTTTTGCAATTACAGAGTGGTATTCATTTAACAGAACAACAATTATCTTCGTATAAGCTGCATCAGAGACAACTGAAGATGAAAAAAATAAAACCAAAAGAAAAAAAAAACCAACTGTCCCTGTATATAACTAATTTGTGCTGTACACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCCCTAGACTGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAGGGCTATCTAAAGACACATTTGGTAGTGTGTTAACTATACAAAAAAAAAAAAAAAAACACACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACATTTCAATTTTTTTCTTTAAAAGAAGTGAGTTGTGTGTGTGGGGGGGGGGGGGGTAAATGCTTTATAGACAAGAAAACAAACTGCGCTAGAACCAACTTATTCATTATCACCAtcttcttcattttcatcttcctcttcttcctcgtcctcatcctcttcatcctcctcctcatcttcctcttccttctttttcttGCTCTTTTCAGCCTTGACCACCCCCCCCTTTTTCACTGCATCAGGTTTTTCTTTAGCTCTGTAGGCAGTAATAGCCTTCTCGTACTTCTCCTTCAGCTCGGCAGCCTTCTTCTCATAGGGCTGCTTGTCATCCGCTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTGCAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTGGGGGTGGTACTCAAAACAGAACAAGAAGAAGGCTGAAGGAGGCCTCTTGGGTGCACTGGGGTCCTTGAGCTTCTTTTTGGTCTCCCCTTTGGAGGGGAATGTAGCTTTTCATTTCTC-TTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTCCAAGTTTCCTCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACGCTGAGAACTTGACTGAAGCATCCTGGTGCTTCTTCTTGTGCTCCTCCTAGCAGGCAGATTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCAGTTTCTTAAG--ATCCTTTGCCCATGTTTAGTTGATTTTCCTCCGTGAGGCACAGAGTCACCCAGTGCCTGCCCGGCTCTCGCTTGCCCCGGAGCTGTCTCTATGGAGCTCAATGTACTG
s HiC_scaffold_1 121717695  945 + 233722169 ttttttttttttttgcaattacaGAGCAATATTCAGTTAACA---CAACAATTATTTT-GTATAAGCTGCATCACAGACAGTTGAAGGGGAAAAG-------------------------CTACTGTCCCTGTACAAAA----TTTGTGCTGTGCATC-----------------------------------------CCATTCTGTAGCTGGCAAAGTTAGTGGCTACTGAAAATAC-ACCAGGACAGGGCTATCTACAGACATATGCAGTCGTATAT------------------AAAAGAAAGACATTGCACAGCTTAAAA-CACATCTTACAGAGCTTtacttttcactgtttttctttaaaatgaatgagTTGTGTACA---------GGGAGTTTAATATTATATAGACAAAAAAAA----TGCACTGGAACCAAGTGATTCATCATAGTcattttctg---tttcatcttt------------gTCCTTATCctcttcatc------------ttccttttttttctttttc------------gtcttgacagcttcc-----tttctctccatcAGGTTTTCCTTTA-TTCGGGAGACAATGATGTCTTTCCCACACTATTCCTT-AGTGCGGCAGCCTTCCCCTCATAAGGCTGCTTGTCATCTGATGCAGTGTCCTTGCACATTTCTCCCAGTTTCTTTGTGAAGTCACCAATGGCAAGGCCAGGATTCTCCTCTGAGCTTTGGAG--GATACTCAGAACAGAACAAGAAGGCGGCCAGAGGGGCCC---CAGGCTCACTGGGATCCTTGAAC-----TTTGGTTTTTCTTTAGGA--GGAatgtaagttttcatttctcttttcataaTGG--CTTCTCCATCTTTGCCGTGTCttcaaattttcctttctctttagcaGACATGATCTTCCATTTTTATGAGCGCTTCTTAGAAAAGCCTGAGAAGTTAATGGAAGCATCTGAG----------------------------------TGTACAAAGAATGCGTATGATGACA-TTTGCCCCCCAGCTTCTTAGGCCCTCCTTTGCC------------------------------------------ATGCCCATCTGGCTCTCACTTGCCCCCGCACTGTCTCTGTGCAGCTCCAtgtactg

a score=18007
s chr3           124588554 604 + 160039680 ctcgtcctcatcctcttcatcctcctcctcatcttcctcttccttctttttcttGCTCTTTTCAGCCT---TGACCACC----CCCCCCTTTTTCACTGCATCAGGTTTTTCTTTAGCTCTGTAGGCAGTAATAGCCTTCTCGTACTTCTCCTTCAGCTCGGCAGCCTTCTTCTCATAGGGCTGCTTGTCAT------CCGCTGCAGTGTTGTTCCACATCTCTCCTAGTTTCTTTG-CAACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTGGGGGTGGTACTCAAAACAGAACAAGAAGAAGGCTGAAGGAGGCCTCTTGGGTGCACTGGGGTCCTTGAGCTTCTTTTTGGTCTCCCCTTTGGAGGGGAATGTAGCTTTTCATTTCTCTTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTCCAAGTTTCCTCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACGCTGAGAACTTGACTGAAGCATCCTGGTGCTTCTTCTTGTGCTCCTCCTAGCAGGCAGATTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCAGTTTCTTAAGATCCTT--TGCCCATG
s HiC_scaffold_1 116832060 600 + 233722169 CTCGTTCTTATCAtcatcttcttcctc-------tcctcctcaaTCTTCTGGTTCATATTTTGAGCCTATTGGGCTATCAGGACTCTTCTTTCCTCCTAGACT---TTTGCCGTTGGCATGATATGCAGCTATATCCTTTTCATATATCTCTTTTAGCTTAGCTGCTTGTTGTTCATATAGTTGTTTACCTTGGCTGACTGCTCAGACCATATTTCATCTCCCACCTTTCTTTTTCATCAGTATCTCCAATGGACAGGCCTG--TGTTCACTTTTGATCTTTGGGCAATAttcagagcaaaacagaaaaaagaaagatggtgGTCTTTTAGGAGCatttaggaaatt---tttttctctcatcacCATTTTTGGGAGGACCATAATTTTTCACCACCTTGTCATAGCAAGCTTTATCACTTTTTGCCGTATCTTCAAACTTCAACTTTTCCTTGGCAGACATGGTCTCCCATCCCTCCAAGCACTTCTTGGAAAACTTCACAAAGTTGACCAAGGAGTCAGGGTGCTTCTTCTTGTGCTCCTCATAGCAGG----TCTACACAAGGCATACA-AGGCATACACTTTGTCCCATGGTTTGTTGGGGCCTATCCTGACCATG

a score=8184
s chr3           124945217 639 + 160039680 aatacgtaataacaaaaaAGAAAAGAA---AAAAAAAAACAATAGACACTAAAACTTATAGAGGAGAAAGTGGGTAAAAGCCTCAAAGATACAAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATGGAGAATTGACAAATGGGACATCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGTAGCAATCCTAAATCTGATAGGGGACTAAT------------------ATGCA---ATATATACAAAGAACTCAAGAAGTTAGACTCCAAAGAACCAAATAACCCTATTAAAAATGTTATACAG---AGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCT-GGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAA
s HiC_scaffold_1  55846124 576 + 233722169 agtatgtactaaactaaaatcaaatgattcaaacataaatattaaacacCTAAAGTACAAGAAGATAAAATGGATTAAACTTTTAAAGTCATAGGTGT------------------TTTCTGAACAGAAATCCTGTTGCACAGgaaatgacatgaaaaatcacCAAATGGGA--TCTGAAACTGACAGAGT------------AAAGGC--------------------GCAACCTACAGAATCGGAAAAAATTT-TGACAGCTACACACAGTACAGAAGACTGATCTCTTTGCCTGTCtcttgatttatatatatatatatataatt-----agacACCCTCAGAAAgactgaat--------taaaaataatgggcAGCTGAAATGAATCAACATTTCACAGATAAGAAGTACCAA-TGGttggtaaatacatgaaaaaa--------tgtctttggccactaaagaaatgaaaattgaagCAACACAGAGATTTCATCTTATACAAGAAAGTAtcactatcatcaagaaa----------------tcagacaGTAACAAATTCCAGAGAAGTTAAAGGGGACAAAAGAATTCCCCTACATTGTTTGTGAGAATGGAAACTAATACAACTACTATGACAATCAGTACAAAAATGTCCCAGAAAA

a score=11218
s chr3           124945243 756 + 160039680 AAAAAAAAAACAATAGACACTAAAACTTATAGAGGAGAAAGTGGGTAAAAGCCTCAAAGATACAAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATGGAGAATTGACAAATGGGACATCATAAAATTGCAA-AGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGT-AGCAATCCTAAATCTGATAGGGGACTAATATGCA-ATATATACAAAGAACTCAAGAAGTTAGACTCCAAAGAACCAAATAACCCTATTAAAAA--TGTTATACAGA-----GCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAA-----AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatccagcaataccactcctgggcatatacccagaagat--actccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccag
s HiC_scaffold_1  90215437 719 + 233722169 aatATAAAAACAAGTATCACTAAA-CTTCTggaaaataaagtatgaaaaa------aacACTTGAAGAAATTGCCCTACGCAAGGACATAC--AACAGAAATTAAGTAGCCCAAGGAATAAGATCAGTGATCAACAAGTgggattttataaaattaaaagagcGTC---ACTGCAAAATACACAATCATCAG--CAAAGAGACAGCCTTCACAATGGGAAAAAGAATGTCAGTTACTCT---TGGGATAGAAGcctaatattcagaaaaatacaaacaccAAAAGA-------CCACAAAGAAC-AAATGACCGAATCAGAAAACGGGTAAACAAATGAATAATGAAtagaaacttttcaa------aatatgaagCA--TAAAAGGCCACTGAGTACATAAAAATGCT-AACATCTTTAGACGTTAGCAAAATGCAAGTCAAAATAACACTCAAGTTCCACCTTTCTTCAGTAAGAATCCCTGTTATAAATAACATAGAAAAaaa-------------------gtgctggtgaggatgtgagGGAAAAGAAATCCTTCTAAA-TGTGGggggaaatgtaaactagtaaaatcATTATTGAAAGGAGTATTgaggtttataaaatatttaaaaatagaaattccagtTGATTCAGCTGTAACTCCACTTGATATTCTCTTGAAAAATTAATGATCACATATTATAGAGATATGTACACACCCAGGTTTACAACAGCAAAATTTAACATGTGCAGACTACATAAGCAACCTAG

a score=10960
s chr3           124945248 485 + 160039680 AAAAACAATAGACACTAAAACTTATAGAGGAGAAAGTGGGTAAAAGCCTCAAAGATACAAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATGGAGAATTGACAAATGGGACATCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGTAGCAATCCTAAATCTGATAGGGGACTAATATGCAATATATACAAAGAACTCAAGAAGTTAGACTCCAAAGAACCAAA---TAACCCTATTAAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAA
s HiC_scaffold_1 200609366 446 + 233722169 aaaaacag-aaactctgaagctgctagaa-----------caaaatacttgaagtcaAAA--------GCACGGGCAAAGACTTCTTAAGCAGAACTTCAAGAGCACAGGAAATAGTATCAAGAGTTAACAAATGGAACTACAGCAAACTAAAAAATTTATGTATAGCAAGGGAAACAGCTAATGAGGTTAAGAAAC--TCAACTGAATGGAAGAAAATCTTTATTCGTGACTTTTCTGATagaagattaatatctagaatatataaagaa------------------aaaaaaagaaaagttaaccCGATAATATATGGATAAATAAACTGAACAATCTCTTCTCAAAAGATGAAGTGCCAATAGCCAATATGCA--TATGAAAAATGTGCAATGTTCTTAGCCActagagaaacaaaaatcaaaacaattttgagattccatttcaccccaaTTGGAATCACTataatgaagaatacaaaaacaa

a score=4385
s chr3           124945248 195 + 160039680 AAAAACAATAGACACTAAAACTTATAGAGGAGAAAGTGGGTAAAAGCCTCAAAGATACAAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATGGAGAATTGACAAATGGGACATCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAGGAAG
s HiC_scaffold_1 208530206 183 + 233722169 AAAAAACATAGATA-TAAAACAACTAGATAACACAGCAA-----------AAACACACCAAGTCATGTGCACAGACTAAGACTTCCTGAGCGTAATTCTAATAGTACAAGAGATAATATTGAGAATCAGTAATTGGGATGACATCAAATTAGAAAGCTCCTGTACACCAAAGGAAACAATAGACAGAGTATAAAG

a score=18655
s chr3           124945249 1013 + 160039680 AAAACAATAGACACTAAAACTTATAGAGGAGAAAGTGGGTAAAAGCCTCAAAGATACAAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATGGAGAATTGACAAATGGGACATCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGTAGCAATCCTAAATCTGATAGGGGACTAATATGCAATATATACAAAGAACTCAAGAA-GTTAGAC-------TCCAAAGAACCAAATAACCCTATT-AAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatccagcaataccactcctgggcatatacccagaagatactccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctacatttacacaatggagtactactcagcttttaaaaacaataaatttatgaaattcttggacaaatggatggatctagaagataacatcctgagtgaggtaacccaatcacaacagaactcacatgttatgcactcactgataagtggatattaccccagaagctcgaaatacccaagatacaatttgcagaatacatgaaactgaagaagaaagacaaaagtat
s HiC_scaffold_1 204091325  947 + 233722169 aaaacag-aaatacttaatcttttagaagatagaataggtaaaa--ctctagaagacatagatataggcaaag-----atttttatgaacaaaaccctgatctcacaggaaaaattacaaagaatcacCAACTGAAATCACATcagattaaaaagcttctgcacagcaaaagaaaccaccaaaagaat--gaaaataactcAGAGAATCAGAAAAAATCT-TACCAGATACTATttggacaaaggactaatat-tagaatatataaagaactcaaaaaagtcaaACCTCCTCCTGCACTacatttaaagactcaatccaaaagtgtgcatctgaaatgaatagatatttctcaaataaaaagtac-aaacagcaaatgaatatatgaaaaaa-tgcttaacatcactggtcatttgagcattgcaaattaaaacaacagtgagattc----tcactcca----------------tcaagaaa----------------tcaaccaacaacaaatgctagtgaCACTGTGGTGAA-CAGGAATTCTTCTCCATTACTGTTGGGAGTATAAAATGGTACAACTACTATGAAGGTCAGTATGAGAATTCTTCAAGAATCTAGAACCAGAGGTACCATTAGACTGAGCTATTCC-tttttaggtatcttccccaaaaa-agttaaaagcactacagtgatatatgcatatccatATTTACAACagtacaactcataatagctaaatcttggaaacagcctatatgaccattaaccaatgaatgaataaagaaaatgtgatatttatatacaatggagtactactctgcaatGAAGAAGGATGAATTtcaatcatttgtaggaaaatggatgcactttgagatcataatttaaagtgaaataggttgaaaacacaag--tttaaatatcatatcgtttctcttatgtg-----------agaaacccaaagcat--------aaatgTGCAGCATA-ATGAAGGATGAGAAGTAGGAAAAacatgt

a score=15866
s chr3           124945306 844 + 160039680 AAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTATAAGATGGAGAATTGA-CAAATGGGACATCATAAAATTGCAAAGCTTCTG--TAAGGCAAAAGACACTGTCAATAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGTAGCAA-TCCTAAATCTGATAGGGGACTAATATGCAATATATACAAAGAACTCAA----GAAGTTAGACTCCAAAGAACCAAATAACCCTATTAAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGA---TGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatccagcaataccactcctgggcatatacccagaaga-------tactccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaac-agaggaatggatacagaaaatgtgctacatttacacaatggagtactactcagcttttaaaaacaataaatttatgaaattcttggacaaatggatggatctagaagataacatcctgagtgaggtaacccaatcacaa
s HiC_scaffold_1 108778433 832 + 233722169 AATGACACAGTTGTAGGAAAGAATTTACTAAGCAAAACCTCAATTTCACAAGAAAtagcaggaaaaataaaacaagtataatTTTGTCAGAATAAAAAGGTTTTGAGTATAGCAAAAGAATcaatcagcagagtgaagagacaatctacaaaaTGGCAAAGCATTTTTGCCAGgttattcctcagacagaagactaatatctacagtataaaaacaacaaaaaaacgaAATCAAAAgttaaagacccaatcaa--------gaaatggtctagaaaaataaacagacaaatc---acagaagaaatacaaacgttCAACAACTACATGTAAAAATTTTTCAACATCTCCTACcgttagagaaatacaaatttaaacaatgctga--ttttattttactctgcaaagaatggcaatcattaagaattaagaaataa------------CACAATAAAAATTGCTGACATGGCTCTGGTGAAAAATGAGCCCTCCTGCATTGTTGATAGGAATGCAAACTAATACAATCCTTATGAAAATCA-TATGGAGATTTCTCCAAGaatcaaat-tagaaattccaAATGACCCAGC--TCACCCTACTAtgtatcttcctcaaagagtttaTTTAAGTCATCATACTACAGCATTACATGCATACCCGTGTttgtagcagcataatttgtaatagcttaaTCCTGGAAGCTGCCTGTATACTCATCAACAAGATGACTAGAT--AAACAATCTGGTGCCTATGTATAATGAAATACCATGTAACtacaaagaatgacaaatttgaggcatttgCAGACAAATGGATGCACTAGGAATAGAAAATGTTGGATGAAATAAATCACGCACAA

a score=14499
s chr3           124945417 769 + 160039680 AAAGACACTGTCAATAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGTAGCAATCCTAAATCTGATAGGGGACTAATATGCAATATATACAAAGAACTCAAGAAGTTAGACTCCAAAGAACC-AAATAACCCTATTAAAAATGTTATACA-GAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGG-----CTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTC---AGAAAATTGGATATAGTACTACTGgaagatcc---agcaataccactcctgggcatatacccagaagatact----ccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaaccca---gatgtccctcaacagaggaatggatacagaaaatgtgctacatttacacaatggagtactactcagcttttaaaaacaataaatttatgaaattc-ttggacaaatggatggatctagaagataacatcctgagtgaggtaacccaatcacaacagaactcacatgttatgcactcactgataagtgga
s HiC_scaffold_1 132313849 737 + 233722169 AATAATACAGCCATAGGAAAAGGGAAGCTGCCTACAGACTGGGGGAAAATCTTTCTCAGCT---ACTGCAACAGAGGATTAACATCTAGAATATTTAAGGAATTTGAAAAACCTAGcaccaaaaaacccaaatagtCCAATTAATAAGTTGGCAAATGCGCTGAACAGACACTattcaaaagaagta---caaatgaccaaaaagtatacgaaaaaa-tgttcaatatctatAACCATCAGA------CAAATCAAAACTGCATTGACAGTCCATCTCACCCTAGTCAGAACAGTTACTatcaagaatattaaaaacagta------------aataaatgatGAGAATACAAGGGGAAGGGGGAGAAGGAATTCTTCTGCATTGCTGGCGGGCGTGTAAGTTAGTACAGTCACTATGAGAATCAGTATGCAGGTTCCTCCAAAGCAACAAAAAAGTAGACCTACC-----ATCCAATAGCTATACTGTTCTTTGGCATACACTT-GAAGGAATTAAGGTCAGCATACTATAGGGATACTAAGATACCCATGTTTATTGTGCCACAATTTATAA---CCAAGA----TAAAGAATCAACTGGGtacccattaacag----atgaataaagaaaatgagatatat--------tGGAGTATTATTCA---TTTGTAAAGAACAGATTTTGATCATTCACGGGAAAAATGGATGGATCTGGAGaccattatgttaaatgaaacaagCCAAATTCAAAAAGGCAAATACCACATTTCTTCCCTAATATGTTGA

a score=5937
s chr3           124945431 418 + 160039680 TAAGACAGGAAGGCCACCAACAGATTGGGAAAGGATCTGTAGCAATCCTAAATCTGATAGGGGACTAATATGCAATATATACAAAGAACTCAAGAAGTTAGACTCCAAAGAACCAAATAACCCTATTAAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCA-CCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT---------------------------------------------------------------------------------------------AGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACA----ACCACTCTGGAAATCAGTCTGGCAGTTCCT
s HiC_scaffold_1 217088735 486 + 233722169 tgaaataagaa----actaaaagat-ggaaaaatactTTTGCCAGCAACATTTCTGATGAagtaata-tatagaatatatat---gatCATAAAAAATTAACATGCCCAAAAC-AAATGACTCAATAAAAAGTGGATGAAGGAACCGGTTGGGGAA------AAAAAGCAGTACAAATTGGCCAATAGATAGTTTGCAAGAAATGCTCA---TTTTCAGCCACTAGGGAAATGTAAATCTAAACAACTCTGGGATTCCATCTTAGCACAGTCAGGATGGGGTCATGAACTATGCAGAAAGTGTTAACATGTAATCATAATCACATACATAACAAAAACACTGGTTTTTGAAAATGATTAGTCCTGGTTTAAGTAAaggcagtaaaaaaaaatacaaaaa----------gcgaTTAATGTTAGCAAGAATGTGAAAATAGAGGaa-ccttctacattgttggtgggaatgtaaactagtacataCTACCATTGTGGAAATTAGTATGAATATTCct

a score=7138
s chr3           124945483 354 + 160039680 TCTGATAGGGGACTAATATGCAATATATACAAA-GAACTCAAGAAGTTAGACTCCAAAGA-ACCAAATAACCCTATTAAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGT
s HiC_scaffold_1 199100922 334 + 233722169 TCCAGTGGAAGAATAATGTCTAGAATATGTAAAAGAATTCAAACAGTGTAACACCAAAAATACGCAGAGAGCTAAATCATAATGGGCAAGTGATTTAAACAGATACGTCTAAAAAGAAGTAGA---AGTGACCAATAAGCATATAAAAAG---TTTCAATACACTTAGATATTAGGGAAGTATAAACCAAAACTACCTTGAGATTCTGTCTTAAGCCAGTCAGAATGTTTAACGTTGAGaatgtaagaaataa----------------taaatccTGATGACAATGCAGGGGAAATGAAATACTTCTACACAGATGGTGAGGAAGTAAAGTAGctcagccactgtgaaaatcagt

a score=12779
s chr3           124945492 694 + 160039680 GGACTAATATGCAATATATACA---------AAGAACTCAAGAAGTTAGACTCCAAAGAACCAAATAACCCTATTAA-AAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGG-AAATCAGTCTGGCAG--TTCCTCAGAAAATTGGATATAGTACTACTGgaagatccagcaataccactcctgggcatatacccagaaga--tactccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctacatttacacaatggagtactactcagcttttaaaaacaataaatttatgaaattcttggacaaatggatggatctagaagataacatcctgagtga-ggtaacccaatcaca-acagaactcacatgttatgcactcactgataagtgga
s HiC_scaffold_1  42070226 649 + 233722169 GGACTGGTATCTAAAATATGCATGTTTAAAAAAACACGCAAGGAA-------CATGGAAAGTAAACAGCCCGATCAATCAACGGGCAAATGAACTGAACGGATACTTC----CCAAAGAAGTGCAAACGGCCAAGAAGTATATAAAAA---TTTCCCACATTTTCAGCTGTCAGGGAAATGCAGATCAACTCTACACTGAGGTTCCATGCTGCTACAGTCAGAGTGGGTGTCATTAAGCACAGCGAAACAGGGCTAATGAGGGTGGAGTGGGAG-------GGATC---------------ACGTCTATGCTGCTGGTGGAAACATAAATTAGCACAGCCACTCtggaaaatcagtgtggaaagtctcctcaaaagactaaaaacaaagcTACCGCCTGAC---------CCACTCCTTGGTATATACCTGGAGGAACTATCTCAGCATACTATAGGGACACCTGAGTTCCTATGCTCTTAGCTGCACAGCTCACGATAGCCAAGATGTGGAACCGGCCTTGGGGTCCATCCACAGAtaaacagatacagaaaatgtaGCACAGATACACTGAGGAGCATTACTGagccataaagaaca--aaatttgt--AATTGGCAGGAAAACGGATAGACC------ATCACAT--TGACTGACattaaaacagacacagacaAGTATCATATATT-----TTCCCTAATACGTGGA

a score=7814
s chr3           124945504 537 + 160039680 AATATATACAAAGAACTCAAGAAGTTAGACTCCAAAGAACCAAATAACCCTATTAAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC---CACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatccagcaataccactcctgggcatatacccagaagatactccaacatgtaat---aaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctacat
s HiC_scaffold_1 168490678 496 + 233722169 aatgtgtagaacaaactaaaaaaaccaga----aaatggacaaat-----------------------gatttgagtagacatttctcaaaagaagacacatGGGAGGCAAACAGGCACATGAAAATA-CACTGAACATCActtatcattagagaaatgaaaatcacaatGTGATAGAAAGTTTGACAATACGCACTGG-----ACAGTTAT--tgacaaacaaacagaaattaaCACTTTGG---AAAGATATGTTTG--------TGAGGAAATTTAAA-CCTCATGAATTGCTGGTGGAAATGTTAAATGGTGCAGCAAGTTTGGAAAACAGTGTAGCTATTCCTCAAATAATTAAACACAGAATTAATATATGACTACACAACTTCATTTCTGAGTATATATCAAAAATAACTGAAAGCAAGGACTTGAATGGATATTTTTACACTTATATTCCTAGCGGTAGAATTCACAGTAGCTAAAAGGTAGacataacctaagtgtccattgacAAATCactaaatatataatacatagtaCAT

a score=5630
s chr3           124945522 393 + 160039680 AAGAAGTTAGACTCCAAAGAACCAAATAACCCTATTA-AAAATGTTATACAGAGCTAAATAAAGA---------ATTCTTAACTG--------------AGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAA-AAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAG------AAAATTGGATATAGTACTACTGgaagatccagcaataccactcctgggcatatacccagaaga
s HiC_scaffold_1   3459641 375 + 233722169 aaaaaattagattctccccaaataaaagacccaatgagaaaatgggcagctgaaatgaatagaaattcatttctatttctatctatcttttttctgaataagaaaaacaaatggccaaggaatacatgaaaataaaagtcaGCATCTCTGACCATTGAAGTAATG---------------------TTCCATCTTAATCTAGAAAGAAtgtct----tcaagaaa----------------tcaaataataacaaatactaggGAAACTGTGGGGGGGAAAGAAACCCTTCTGCATTGTTAGTGGGAACATAAACTGGTTCAACAACTATAGAAACCAGCGTGGGAAATCCTCAAagcactaaaactagaaattgcaTTTT-----GACACAGCTAT---TCTTCTAGGTATCGTCCCAAAAGA

a score=4562
s chr3           124945538 196 + 160039680 AAGAACCAAATAACCCTATTAAAAATGTTATACAGAGCTAAATAAAGAATTCTTAACTGAGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAA
s HiC_scaffold_1  77485727 181 + 233722169 aaaaacccaataa-------aataatGAGCAACTGAAAGGAATAGACATTTCttg---gaagaagtacaaatggcaaaaataTG-----AAGAATTGTTCAACATCCCTGACCATTAGAAAAGTGCAAATTAGAATAATATTGAGATTCCATCGTATCTCAGAAAGAATGTCTgtcttcaagaaatcaaacagtaa

a score=10221
s chr3           124945597 495 + 160039680 AGGAATACCAAATAGCTGAGAGGCACCTAAAAAAAATGTTCAACATC-CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTC--------TGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatccagcaataccactc-ctgggcatatacccagaagatactccaacatgtaataaggacacatgctccactgtgttcatagcagctttatt-tataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctacatttacacaatggagtactactcagcttttaaaaacaataaatttatgaaatt
s HiC_scaffold_1 182134870 467 + 233722169 AGGAAtacataa-atcttggaaacaactcaaaaaattatataaaacaatttaacCATTAGGGAATTGCAAATAGAAACTACTTTGAGATTCCACCCCACTCCAGGACAAATTGCTATTATGAAGGAAAATAA----------------------TGAATGTTGTCAAGCatac-aagaaaaaagaactgtTATACACAGCTAATAGGAATATAAATTATTACATCCAGACAGCTGTAATGCAAATCATTATAGAAAttctgcaaaaaaacaaaaatagatctCCCGTATGACCTAGCTATACCATTCTTTATGTATGTAGCCAAAGAGTACAC---------ACAGGGATAgttgc------atactcatgtttactgTGTCACACAACAGCTAAGATGTGGGGCCAACAAAGATGCTTAtcagcaaatgaatgaataaagaagatgtcATATACCTACACAATAAATTATTATTCaatcattaagaaaaattaaattatgtcaTT

a score=12911
s chr3           124945624 525 + 160039680 TAAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatc--------cagcaataccactcctgggcatatacccagaagatactccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctacattt----acacaatggagtactactcagcttttaaaaacaataaatttatgaaattcttggacaaatggatggatctagaagataacatcctgagtgaggtaacccaatcaca
s HiC_scaffold_1   8983169 512 + 233722169 taagaaaaatgctCAATAGCACTGGTTCTTccagagatacaaattaaaacaatgctgagatacCATTTCACTCTAGAAATAATGACcattttcaagaaa----------------tcaaccaataacaaatgttggtgggactGTGGGAGAACAAGAACACTTCTCCCCTGTTGGTGCAAGTGGAAACTGGTGAAACCACTCTGAAAATCAGTATGTAGATTCCtcgaaaaa----aactaaaactac---aagtTCCATTTGATCAGCTATTCCTCTTGTTagtatctttctaaaagaattaaaagcacatCACACTGATATATGCatgcctatgtttatagcaacacagtttttaatagctaaatcttggaaacagaccCTATGCCCATCAACACATGACTGGATATAGATGTGGGgctcttttttttaatacaatggagtactactcattcataaagaaagataaacttgagacatttatagctaaatggatataGTTTGAGACCATTCtcc--agtgaaataaattagataca

a score=13063
s chr3           124945628 478 + 160039680 AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGATAAAAAAAAAAAAAAAAAAAACCCTCAGGTCACAGTAGATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagatcca-----gcaataccactcctg-----ggcatatacccagaaga---tactccaacatgtaataaggacacatgctccactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctacatttacacaatggagtactactcagc-----ttttaaaaa--caataaatttatgaaattcttggacaaatgga
s HiC_scaffold_1 207705297 471 + 233722169 aaaaatgtttaatatcattgattatttgagaaatgcaaattaaaaccatactgagattccatctcaccccagaaagaatg---agcatcagcaagaaa-------------tcaaccagtaacaaatactgATGGAGCTATGGGGAAAAACGGACACTTCTCCAGTGTTGGTAGTAGTGTAGACTGGTTCCACCACTGTGGATCTCAGTGTGAAAGCTCCTCAAAAGAT--------GTAGGTTTGGAGAGCTCATTCTCTCCATA-CACCCCTGTTtgtgatattttctcagaaaaattgaaaacatcatagcacagagataaatgtacatccatgtttatagcagcatagtttgtgaTAGGTAACTCtttgaaacagcccaaatgtccctCAACcaaggaatggtt--aaaaaatgtggtatttgtaagcactggagtactgctcagctatttttttaaaaaatagataaatttgaggcttttgtaggtaaatgga

a score=5456
s chr3           124945753 378 + 160039680 ATGCTGGCTAAGATCTGGAGAAATAAAAAGACTCCTGCATTGCTGGTGGGATTGAAAGCTGGTACAACCACTCTG-GAAATCAGTCTGGCAGTTCCTCAGAAAATTGGATATAGTACTACTGgaagat---ccagcaataccactcctgggc-atatacccagaagatactccaacatgtaataaggacacatgctc-------cactgtgttcatagcagctttatttataatagccagaagctggaaagaacccagatgtccctcaacagaggaatggatacagaaaatgtgctac---attta--cacaatggagtactactcagcttttaaaaacaataaatttatgaaattcttggacaaatggatggatctagaagataacatcctgag
s HiC_scaffold_1 183153656 354 + 233722169 ATGCTGTTGAAGATATGGAGAAACTGCATCACTTTTACATTGCTGGTGGGGCTGAAAAATGTTACAGATACTCTGAGTAAGGGGtct----------------------tacaaaactaaaaaaacattTATCAGCAAATGCACTGTTAAGCTCTGtatttcagaga-------------aatgaaaaattatgccCATAAAAAAAATCTGCCCACAGCAGCTTTATTAGTAACAGTTAAAA--CAGAAATGATCCAAATGTCCTTCC----AGCAGTGAATGATTAAATTGTGATACTTAACTTATCTACCATGGACTACGACTTAGCTACAAAAAGGAACAAACTACTGACACACGAAACAATTTGGATAGATATCAAAAGAActatgctagg

a score=39820
s chr3           125042016 1326 + 160039680 AGACAATTTGTATGTGTCGGAATATGTGTGTGTTCTTTTTTGGGGTGCAGTGAACTTTACTGATGGTATTCAAGAGAGTAGGAGGGCTTCCTAGGCCCATCCGGTTATTATGGTGGTCTGCTATGGAA----ATTGTGAGGGAGATGCTCAG--TGTTG-GGGGCCAAGTTGGGATAGGGACTCCTCAGCAACCGAGTGCCTCTCATTTGCTCTCAGTGTCCTTGCTGAGGTGGGTGGTCCATGGTTTCTTATTCCTTAGAGGCCATATAGGCCATGAGGTCCACCACCCTGCTGCTGTAGCTGTATTCTTTGTCATACCAGGAAATGAACTTTACAAAGTTGCTATTGAGAGCAACGCCAGCCTGAATATCAATGGTGGAAGAGAGAGAGCTGTTGTTGAAGTCGC--AGGAGACAACCTGGTACTCAGTGTAGCCCAGGATGCCCTTAAGTGGGATCTCGGGCACCTGTTTCACCACCTTCTTGATGTCGTCATACTTGGCAGGTTTCTCCAGGTGGCAAGTTAGATTCACAATGTATACATTGGGAGTAGGAACATGAAAGGCCATGCCTGTTATCTTCCCATTCAACTCTGGGATGACCTTGCCCACAGCCTTGGCAGCACCAGTGGATGCAGGTATAACATTCTGGGCAGCC-CACAGCCATCACGCCACAGCTTTTCCGAGGGGTCATCAAAAGTCTTCTGAGTGACAGCGATTCCACGGGCCATGGTCATGAG-CCCTTTCCAAAGCCAAAGTTGTCATGCCAAAGATGACCTTGGCCAGGAGGACTATGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGAGAGTTGGTATATTTATCGTGGTTCACAACCATCACAAACATGGGGGTATCAGCAGAAGGGGAGGAGATGATGCCTCTTTTGGCTCCACCCTTCAAGTGGGTCCCAGCCTTCTCCATGGTGGTGAAGACACCAGTATACTCCACAACATACTGTGAGCACCAGCATCAATCATCCCACTTGATGTTAGTGGGCTCTCACTCCTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAACCTTGACTGTGTCTTTGAACTTGTCATGGATGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAACGGGTGGCTGATGGCAACAATCTCCACTGTGCCAGAAGCAGAGCAGAAGGCAACCCTGGTAACCAGGCACTCAATACTACCAAATCCGTTCACACCAACCTTCACCATCTTGTCTAGTGTATGAGGCTGGCACTTCAGAAGAAGATGCGGATGTCCCTGGAACAGGGAGGAGCAA
s HiC_scaffold_1  97936648 1250 + 233722169 AGAAAACTtaagtatgtggaaaaatacaAA----CTTTTGGGTGGCACAGTGGACTTTACGGATGGTACATGACAGAGTAAG----CATCTT-------TCCCCTTCTTCAGGAGGTCTGGCATGGGAGCCCACAGGAGGAGAGAGTCTCAGAGTGTTGTGGGGCTGAGTTTGGGCAAG-ACACTTCCTCAGCTTAAAGCccctctcttttcat-----ttcttgctcAGGCTGGTGGCC----------TACTCCTTGGGGGCAATGTGGACCATAAGGCCCACCATTTTGCTGCTGTAACCAAATACATTATCATACTAGAAAATGAATTTGACAAAGTGATCACTGAAGGTAATGCCATCCCCAGCAATAAAGATGGAAGAAGGAGTGTCACTGTTAaagtcacaaaggaaaaaaatcagtcttc--tgTAG-CCAGGTTGTCATTTAG-GGGCCCTCCAGTGCCTGTTTCACCACCTTACAGATGTCATCATATTCTGCAGCTTTCTCTAGACAGCATGTCAGACCTACAACTGACAAGCTAGTAGGCAGCCCACAGAAGCATATGCTAGTAGTCTTGGCATCCAGC-CAGGGGTGATCTAGACCATAGACTTGGCAGCATCAGC--------ATAGGATGATCTGGGCAGCCACATGCCTATCAAGCTACAGTTTTCCAGAAGAGCCATC--CAGTCTTCTGTATAAGAAGGATGACCTGG----TGATAATGAGTCCCTCTACAACCCCAAAGATTTTGTG-----GATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTA-ACAGGTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGT--TAAATACCAGT-----TCACCCATTTTGATGCTGATAAA-TCTTACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTC------CTGAAAGCAGACTGGATAGCCAAGCACCCAATATGGCAACATCTATTTGGTCTCATCTTCATCACTGTATCTCAGGTATATAGGTGGC----CATGAAAGGATGTTGCtgtctgtaaaatgagaagaaaaaa

a score=24782
s chr3           125042387 949 + 160039680 GGAAGAGAGAGAGCTGTTGTTGAAGTCGCAGGAGACAACCTGGTACTCAGTGTAG--------CCCAGGATGCCCTTAAGTGGGATCTCGGGCACCTGTTTCACCACCTTCTTGATGTCGTCATACTTGGCAGGTTTCTCCAGGTGG--------CAAGTTAGATTCACAATGTATACATTGGGAGTAGGAACATGAAAGGCCA-TGCCTGTTATCTTCCCATTCAACTCTGGGATGACCTTGCCCACAGCCTTGGCAGCAC----CAGTGGATGCAGGTATAACATTCTGGGCAGCCC-ACAGCCATCACGCCACAGCTTTTCCGAGGGG-TCATCAAAAGTCTTCTGAGTGACAGCGATTCCACGGGCCATGGTCATGAGC-CCTTTCCAAAGCCAAAGTTGTCATGCCAAAGATGACCTTGGCCAGGAGGACTATGCAGTTGGTGGTGCAGGATGCATTGCTGACAATCTTGAGAGAGTTGGTATATTTATCGTGGTTCACAACCATCACAAACATGGGGGTATCAGCAGAAGGGGAGGAGATGATGCCTCTTTTGGCTCCACCCTTCAAGTGGGTCCCAGCCTTCTCCATGGTGGTGAAGACACCAGTATACTCCACAACATACTGTGAGCACCAGCATCAATCATCCCACTTGATGTTAGTGGGCTCTCACTCCTGGAAGATGGTGATGGGCTTCCCATTGATGACAAGCTTCCCATTCTCAACCTTGACTGTGTCTTTGAACTTGTCATGGATGGAGTCATACTGGAACATGTAGACCATGTAGTTGAGGTCAATGAACGGGTGGCTGATGGCAACAATCTCCACTGTGCCAGAAGCAGAGCAGAAGGCAACCCTGGTAACCAGGCACTCAATACTACCAAATCCGTTCACACCAACCTTCACCATCTTGTC----TAGTGTATGAGGCTGGCACTTCAGAAGAAGATGCGGATGTCCCTGGAACAGGGAG
s HiC_scaffold_1   9527487 901 + 233722169 gGAAGAGCATATACCACTGTTAAAGTCACAGGAATCAACCTGGTCCTTAGTGAAAGAATCTTTTTCAAGATGCTTTTAAGGATTCCTTTGAGC-CCTGGTTCACCA---TCTTAAGGTCATCATATTTAGCTGCTTTCTCCAGGAGATCTTTCTCCAGATCAGATCTATGACTGATATATTGGGAGTAGAAACCCAGAACGTTAGTTCCAGACTGCTTCTCACTCTTGTA-GGAATGACATTGCTTACAG---TGACAGTATATGGCTGTAATTAGAAGGATGCTCTTCTGGGCAGCCCCAAGGCCATGATGGCATACTTTTCACAAAAGAACCATCTACACTTTTCTGGATAGCAGTAATAGCATGGACTAAAACCATGAGCTCCTCTGCAATGCCGAAGTTTTCATG-----GAAGACTTTGGTTAGGTGGGTTA-GCTGTTAGTAGTATAGG------------------TAAAGTAATTATTTTACTTCTCATGGATTACAATCTTCATAAATATGGGT-TCTCAGGAGAAGGGG---------------------CTCCAACATTTATATA---CTTTAGTTTCTCCAAGGTAGTGAAGACAACAATGGATTCTATAAAAATCTC--AGCACCAATATCACTTA----GTTTGGTGTTGATGGAATCTTGCTTTTGGAAGATGGAGATGGGCTTTCCATTGTTGACAAGATTCTTGCTCTTAGCCTTGA-TGTGCCATTGAAGGAGT-GTGGATGGAATCATAGTGGAATGTGTGTAGCATGTAGTTGAGGTCAATGAAGGGGTCACTGATGAGAATAATATCCAGTTTGC------TGGAGTTAAAGTCAGCCAAGGTGATTAGGCACTCATTACAGTTAAA-----TTACTCCAGTCTTCCCATTGTTGTCTCAATGATGCAATGGCATAGCACTTCATGAAAAGGTGTGACTGTCTGCAAAATGAGAAG

a score=3554
s chr3           125090283 91 + 160039680 CTAACACCTCTCTACACTTGTAATTTTTCATGGTCTTTGATACAGTGTAATGGGGCATGCCTGATTGGTAAGCAGTGAACATTATTAATTT
s HiC_scaffold_1 133376749 88 + 233722169 CTTGCATTTCTTCGTTCTTGT---TCCTCAAGGTCATAGCTACAGTGGAATGGGACATGCCTGATGACTAAGCAATAACCATCACTGACTT

a score=5163
s chr3           126278587 160 + 160039680 GAAAAACTGGAAAGAATTAATGATGCTCTTTCCTGTGAATAGGAGTGCCGCCGGCGGATGTTAATGAAATGATTGGATGTGACAGTGCAGTCCTTTGGATGGTCCGATAGAGCAAAGGCAATAACAGATAACATCACAAGAATTTACCAGCCCAAATGTT
s HiC_scaffold_1 218724084 150 + 233722169 gAAAAGATAGAAGCAATTAACCAAGCCATAGCCAATGAATATGAAGTCCGGAGAAAGCTGCTAATAAAACGTTTGGATGTCACTGTGCAGTCGTTTGGCTGGTCTGACAGAGCTAAGGTA---------cacatta-aataatttaaaagagcaaatatt

a score=8049
s chr3           126278863 385 + 160039680 TCTTCAGGTGCTTATGGGACGGGTTTCTGACAGGGGAGGACGGCCGAAAGAAATTGAACTGCCAACCCCTGAATTGCCCCCTTGGCAGAAGAGACAAGA---------------------------AGACggagggaggggtggttggg-------------tggtggaggtgatggtagaggaggtagt------gggggtggaagaggtggacggggta---------atgggagagggtggggaggggatggaggaataggtggaggagggtggggaggaagtggtgagggAGTGGTAGCAGAGAAGGTTTCCAAGGCAGAGGAGATCATGGT--GGG----------AGGGGAGATTATGGTGG---AAGAGGGGGCTACGGCGGGAGAGGGGGTTATGGTGGGAGAGGTTATGGATATC--CGTATTGAGGAAGAGG------TGGTGGTGGTGGCCA
s HiC_scaffold_1 218724731 450 + 233722169 TCCATAGGTGTTGATGGGCAGGGTGCCTGACAGAGGTGGTAGACCCAATGAAATTGAGCCTCCACCTCCTGAGATGCCACCGTGGCAGAAAAGGCAAGATGGGCCCCAGCAGCAAGCAGGAGGCcgaggaggagggagaggtggTTACGAACATTCCTCATatggaggacgaggaggaggaggaggtcatgaacaaggaggagggagaggtggaCGTGGTGGCTATGACCATGGTGGccgagggggaggaagaggaaataagCATCAAGGAGGCTGGACAGATG-----GAGGGAGTGGAGGGGGAGGCAGCTACCAAGATGGTGGTTATCGAGATTCGGGTTTCCAGCCAGGTGGCTATCATGGTGGCCACAGTGGTGGCTACCAAGGCA---GTGGTTATGGCG-----GCTTCCAGACATCTTCATATACAGGAAGTGGATACCAGGGTGGTGGATACCA

a score=4064
s chr3           126880301 307 + 160039680 TGTATTATttagctgtttgtcactgtgaca----------ggaaaacagctcatgggaggaaaggtctatttgactttcattttagagtatttggcc-caatgagcaaaccccattacttccagtc----ctgaaaagaaacagaat---agaccaattgtggcaatgtagcagccagtaagcagggacagtggcagtgaaagtcaagaaaaagATAACACTCTTTAAATGCCATCATCTAATGA----------CTCTT--TTCTTTTTCCTCCTAGTAATGCCACCAAGTTATGACACCATCAATGGCTCAACACATGGATAACATCAGGGCCCT
s HiC_scaffold_1  35315322 317 + 233722169 TGAGTTTTCCAGCttcctgttgctgtgacaaaacacccGAGGAGAATGACTTGAAGGAGGGAGGTTTAATGTGGCTCACA-------GTATACGCCCACAGCCAGCTGGCTCCAGGCCTTCCAGGCTACACTGTAACAAGGCAGAAGGAGAGAGAGCTTGAGG---------AACTGGCAGGGGAGGACAGGGGC---GAGACACCGGCCCCAGAGGATGCTCCCCTGA-GCCACTGCCTTGAGGTGGGCCCCATCTCCTGCTTCTGTCACCTCCCGGTAATGCCATCAAGTTATGGATCCATTAATGGATTAAACCACTGGTGAAATTGGAGCCCT

a score=8290
s chr3           127005369 134 + 160039680 CTGCCTCTAGAGGCTTTGCAGGAGTGGCCGCTGTGTCCTGCTTACGTCAGTAGGTGGCAGAGAGGAGAGAGACTATGTCTACACTCAGTATTCTGACCTTTGAACATCTGAATGATTAGTAGCTCCACATTGCC
s HiC_scaffold_1 194511548 134 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=10793
s chr3           127546617 212 + 160039680 TTTCTTTACTTTTCAGGGTCCCACAGAAGTACGTACCTCAATGGCTTTTGCTGCTTGCTCTTTTGTTTCAAATTCCACAAAGGCAAATCCCTTAGGATCCCCAGTAGACTTGTAATGTGGAATACTT-ATGTAAACCACATTGCCACATTTCCCAAATACTCTCTCAATCCAGCTATGAGTAACATTTTTGGGGAGCAACTCCTGTAATAAAT
s HiC_scaffold_1  61827317 203 + 233722169 TTTTTCCGCCCCTTAGGTTC------AAGGACCTACCTCAATAGCTTTTGCAGCTTGTTC----ATTTCAAATTCCACAAAAGCAAATCCCTTTGGATCTCCAGCAGACTTACAATGTGTTGTACTTTATATATACAACATTGCTACATTTCCCAAATACTTTTTTGGTCCAGCTGGGATTAGCATTTTTAGGAAATAATCCCTGCAGCAAAT

a score=6743
s chr3           127771328 215 + 160039680 TTCCTAACTTGAGAATCTGAAATCCAAAAGGATCCAGAACTCTAAAGCTCTTTGAACCCTGACATAATGTCACAAGTGCAAAACTCCATACCTGACCTCATGATATATATAGAGGTC---------------TATAAAATTACCTTCGGGTTATGTGT---AACCATGGAAGAAATATAAGCAGATTT--TGTT---AGTTGACCATCTTTGCCAAAAATAGCTTATTCTGTATATGT
s HiC_scaffold_1 220337539 236 + 233722169 TTCTTGATCTGAAAATCTAAAACATGAAGTGTTCCA-AACTGTAAATAGTTTTGATCACTGGCATGATGCCACAAGTGAAAAATTCCATACCTGGCCTTATGTGATGGATTACAGTCAAAATTAAACCATTgtgtaaaattaccttcaggcctTGTGTGTAAAGTgtacatgaaatataaatgaatttcatgtttagatttGAGTCTCATC-CCTAAAGTAGCTCATCATGTATACAT

a score=83219
s chr3           127773326 4829 + 160039680 [encoded data, 5280 characters]
s HiC_scaffold_1  10897298 5059 + 233722169 [encoded data, 5280 characters]

a score=59277
s chr3           127773374 3526 + 160039680 agtcacttaaagaattacaggagagcactgctaaagagttacaggcccttaaagaaaagcaggaaaacacagccaaacagg---taga---aatcattaaagaaaaacaggaaaacacatc--caaacaggtgatggaaatgaacaaaaccatactaga-----------------------actaaaaggggaagtagacacaataaagaaaacccaaagcgaggcaacgctggagatagaaaccctaggaaagagatctggaaccatagatgcgagcatcagcaacagaataCAAGAAATGGAAGAGAGAATCTCA----GGTGCAGAAGATTCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATG-AGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCT--TCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCC-CATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCC-------------------------------ACGACAAAACCAAATTCACACAATATCTTTCCACGAAT---CCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAA-------ATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGC----ATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGA-----CACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGAT---ACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA----AGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATA-----GTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC---CACTATTACTCTGATAC----------------CTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC----AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG----ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC-----ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCAT-ACCTAAACATGATAAAAG-CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaa-agaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggag
s HiC_scaffold_1  65294981 3439 + 233722169 AATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaATAACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACCAAATAAAATCCAG---GAGatcaaaaattacactgaaagcaTAGGCAGGAGA-----AATGACAAATGTGAGCA-------CAGAGTACT-GAAATAGAAGATGGAG-CTGATGTTGGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatgga----gccaacagctgcta------------------------gatgaaaTGCGGAAGACTAAATTAACTGGAAGGAGTAAA-AATCAGAACGAAG---------TACAAATGGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAGgtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACCCAAAAAAT----TCTCAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaaaaaaaaaaaaaaaaaaaaa------cctataaaaataaatacaccaa-------GCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTGA------------GACCCAGCAGTATGCTGTATATCAGAAAGTCATTT--------AATCCAAAAAACATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGA-------TTACCACAtattaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGACTTAGAAGATCTGATATAT----------ACAATTATATTGAAGAACTTCAATACCACACTGAC----ACAAACATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGA---ACATTCT--AACAAATG-ATTTAATAGCTATCTACAGAGT--TTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatc----caaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaagg--taagacCTAAATC-------TTAGAAATTAGGA-------ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAATAAGATATAAAGACCCTGGAATAATACAGTCACAGCCAATGAATTA-----AACCATAAATAAGAACATCTATGAACAAATATAAACCCAG-----ACTACGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAA----CCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAGCAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGt---cacacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAATACAGAAGGATTCCTTTTAcaaaagggaagggg

a score=7947
s chr3           127773429 892 + 160039680 aaagcaggaaaacacagccaaacaggtagaaatc-attaaagaaaaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatactagaactaaaaggggaagtagacacaataaagaaaacccaaagcgaggcaacgctggagatagaaaccctaggaaagagatctggaaccatagatgcgagcat-----cagcaacagaataCAAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGACACAACAG-TCAAAGA--AAATACAAAATGCAAAAGGATCCTAACTCAAAA----CATCCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAA-ATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAG----AAGCAATACAAGGAC--GGAAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGAC
s HiC_scaffold_1  87508822 830 + 233722169 AAAGCAGAAACACATAAGCAGTTTTACAAGATTCTATTAAAGAAGTAAAggattttactaataaaatgctGGATGAACTTaaggaag--aaacaataaatagTTAAAGAATTAGAcattatgaaaagaaagcaaacaga---aatacagaatgtGAAGAATTCAGTAGAAAG-TATGG---------TGAGCACATTCAGCCAGTATCAGGACAGACAGCATGGAAAAA----------------------CCGAAGACAAGATCGATGTAATAGATCATAAACTGAATGATGTTTGAAAAATGAT---AACAGGAAAGCTATATCCAGGAGCTGCTAGATGGCTCACAAAAACCCCACACCAGATTTATaggcataaaagaaaaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC-----------TCCTGCAAAA---TTAACTTTCAAAACTGGCTGAA--AAGACTTTTCATGgcaaaaaaaatactaaagaaatacATAACCACAAAACCACC-------------ATGGCAGGAAATATTCAAGGaactcagagacagagagattatCCCGAAGAGCCCCAAGGAAAGTATACACCTAAC

a score=4578
s chr3           127773538 554 + 160039680 gtagacacaataaagaaaacccaaagcgaggcaacgctggagatagaaaccctaggaaag-agatctggaaccatagatgcgagcatcagcaacagaat-aCAAG--AAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGA-GAACATCGACACAACAGTCA-AAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAATAATAGAAGAAAACTTCCCAAACAT----AAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGA---------TAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAG-CCAGAAGAGC
s HiC_scaffold_1 139027732 702 + 233722169 gtacaaaaaacaaaaagaacccaACAGGAATC----TTGGAAATGAAAAGCTCAGTAAGTTAAATTAAGAACT-----------------CAATGGAATGACTAGTCAAACAGAAGATGGAATTCTGAGCTT-GAAGACAAAGTTGATGAATTATCATACAAGGaacataataaagaaaaagatgtcAGAGGAAT-------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAATCAGGGATAGGGCCTTGGCTCAGGGTTAAAGCTCCTGTGTAGCACTGTAAGGGCCAGGGTTCAATTCTTAGCAAAGGTAAGAGGGAGGAGGGATGCAGGGAAGGAGGgatgggaaaggaggaggagaagaaaaggaggaaggaaaggatgggtggatgggttCTGTAAAACAACACCAGAAAACTTCCCGAACCTTGGGAAAGATACAGACATCCA-----GTACAGGAGGCATTTAGAACCTCAAATAAGCATGACCAGAAAAAACTCTCCCCACATCACTTTACAGTTAAAATGTCAAGAGTACAGAATAAGGGGAAGAGTCCTGGAAAATCCAGGACAGCAACAGCAAA---TCACTTGTGCTATGACAGGGCACCTATCAGAGTAACTACAGGGTCCCCTGCAGAGACTCTTAATGACCAGGAGGGC

a score=22879
s chr3           127773541 2707 + 160039680 gacacaataaagaaaacccaaagcgaggca---acgctggagatagaaaccctaggaaag-agatctggaaccatagat-gcgagcatcagcaacagaataCAAGAAATGGAAGAGAGAATC--TCAGGTGCAGAAGATTCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAA------CCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCC-AAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGT--AAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAG-ATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATC--ATTCGACAAACCAAAAAGAAGACAGCCACAAG-AACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAA-ACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGA----CACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACA-----AATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAA--AGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAG---GAAGCAAATT-CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATA-CTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC------CAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCG--------------------------------------------------------------------------------------------AATCCAAG-----------------------------------------------------------------------------------------------AACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGAT-CAGGAATTCAAGGCCCA
s HiC_scaffold_1  89593996 2654 + 233722169 GATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaagaaaagataaacggGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCA--------------tggaaaaagaactaaaaatgaaagattaaga-----------ataataacaaatataaaatattttttaaggttAGT-GGCCTTGAGGTACATGTAGGTATAATACT-AAAGCATAAGC--ATCTATCCATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATG-----GCTCATTTAA-AGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAACT-------CATGACA-------AGTAAGCCAGCattccagaaaatatt---------taaatatcacaaaGACAATGAGTATA----AGACCATGTAAAGTATAAatttaattggaaaaataaagacaaaaatgagaacAAGGAATTAAATGTTAG----AGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAAT-CTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAAGAT---CTG--GAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaacaaaaatcttt---aagtGACAAAGAATGCCACTACACATT-GTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGGAACAC-AAATGCCTGCACATGttatttcataaaacaatttCACTTGA--AAAGACAAACACAT----------CCCCAAAAATATAGTAGGGGACTTCAACAC-----TATTTTTATAag-taggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT--------------------------------------TTTAAA-----------GTTCTATTGCATCACAatggaatgaaactagaaattattaggaaaaaaattacatgaa----------tatGCTGAAATTGAGTTA---------AAATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgaca----aatcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAA----AAGCAAGAG-----------TGGTTCCCAAAAAATA-ACCTAATGGTactaaagagaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAG-----------agactcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACA------TGATC----------TACTAAAATTGAACAAGTaagatatataaaat-taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=98517
s chr3           127773626 4555 + 160039680 [encoded data, 4657 characters]
s HiC_scaffold_1  64793136 4446 + 233722169 [encoded data, 4657 characters]

a score=17683
s chr3           127773664 1228 + 160039680 GCAGAAGATTCCATAGAGAACATCGACACAACAGTCAAAGAAAATACAAAATGCAAAAGGATCCTAACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-------GAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA--ACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGG-AAATCACGCCC---TAGAACAACTAAGAAAGTAATCATT--------CGACAAACCAAAAAGAAGACAGCC--ACAAGAACAGAATGCCA-ACTCTAACAACAAA-----------AATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGA-----------------------ACTCT-------CAATT-CTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA--CAGAAGTTATGAAA
s HiC_scaffold_1  67576280 1211 + 233722169 GCAGAGTGTTTAATATTGAA----GACAAAATAGTGAATAacaataaagaactcaaa--gaagctaagaagaaaaat------------agacaataaGAAAAGACTAtgca-acagctgctag------atgatagCACAGAT------------GAATTCACTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagttt------aaaatacaagtaactgaca---tttataaaacattgaaCAATTATGATAAAAAGAAGCTCACCACAGCATATTCTTACTA----AGCAAa-----------aaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTTGG-ATGATATATGAGTGCTAAATCAGCTCT---Aaggaaaatacttaagaatattctcaacagaaacaataagtcagacacagctaaaatcac--agaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccggaaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaaaagggtacaagttatgcagaatttcagaaa

a score=83781
s chr3           127773712 4378 + 160039680 [encoded data, 4535 characters]
s HiC_scaffold_1  91695044 4298 + 233722169 [encoded data, 4535 characters]

a score=49348
s chr3           127773742 4120 + 160039680 [encoded data, 4587 characters]
s HiC_scaffold_1  55842503 4197 + 233722169 [encoded data, 4587 characters]

a score=7227
s chr3           127773763 832 + 160039680 AGAAGACCAAACCTACGGATAATAGGAATTGATGAGAA----TGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA-ACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGAT----AATAACA----GAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACA-AGAACAGAATGCCAACTCTAACAACAAAAATAAA-----AGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGA--CTGAAGAAACAGGCTGGAGTA
s HiC_scaffold_1  66783218 707 + 233722169 AGAGGACTAA-TGTAAGGTTAActggaataagtgaaaaattcTGAA-----TTAGCCCAAAGGGCACACAAATTTTATGTATAGAA--ATAGCCACAAAAT------ACATAAGACAA-------------------ATGAGGCATGTAGAACCCTAAACAGTCACAATCAAAAGAGAACCTCTCCACATAACATCAtagtcaaaataccagaaattcagtacaaggacagaat-ttaaaagctgttagagaaaatg----aGTAAT--------------CCATTAGAATTATGGGAGCTTTCCCA----------------------------------ATGT----------------------------------AGATTCATACATCTtacaaaagtatctttcaaaaatgatggagaaataaggaatCGTCATAACAAACAACTCCtttaagaaattcatggccactaAACCAGTGCTCTAAAAAATTCTCAAgaatatcctagaaagagacaa--caaAGCCAG----CAAGGCCCAAAAAATCTAGTAGAATGAGTAC-------ATCAAGTAGGGTGAAGCAGAAGAGAGCAGAAAATCAAC----AGGATAATAATACATTGACAGGAATACATTCATACCTTTCAGTAATTACTCTCCATGTCAATAGTCTTAATTCCCCAGTCAAAAAACACAGAATGGCAGAATCAATCAAGAACCAAAGCCCAGTGTTATGCAGTataca-aaaatgcat-ttaataaaaaagaaacacacagattaaaaatcaaagg-------acaaTATCACATGCAATGGGATCCTGGGGAAAAAAGTTGGAGTA

a score=26547
s chr3           127773763 3060 + 160039680 AGAAGACCAAACCTACGGATAATAGGAATTGA----TGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAAC--AAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAAT---TCACACAATATCTTTCCACGAATCCAGCCCTTCAAA--------GGATAATAACAGAAAAGAAGCAATA--CAAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATCA-TTCGACAAACCAAAAAGAAGACAGCCACA-------AGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAAT-ATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGAC---ATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCT-GGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACT----CATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCA--AAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA---CAGAAGT-----TATGAAACAAATG----GACCTGACAGATAT-----CTACAGAATATTTTATCC--------TAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACA------TGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGA--------AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGAC--CTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAA-GGTACTCTACCCAACTCATTTTATGAAGCCACTATTA-CTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG-TTAG---ATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG---TTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT--AGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatct-tggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
s HiC_scaffold_1  81644246 2697 + 233722169 AGGAAGATAAACCTATGACTACTTgtagttaaaaattaaaagataaaattttaaa-----------agtttatggtTTACAGAAAGCA-TAACAAAAATCTTTCCAAATATAGTAAGTGGG-------------TAAGTGGAGCACACTGAAtattaaatacaatgaa---aaaaatcaatttcccaGGCTAAATCAT--TCAAAATACCCTATGTGCAACAAATAGA-------CATTACAAGGtatcataaaaggaaaataatgaatttttaaagtaaa-cccATTAGGATCATGAAAGATTGATGAAAACAAACCGTAAATCTCAGGAGTGGGTGGAATGAAATGCCCCA-ACCCTAAAATAACACATCTTCCAACTCATACTAGCATTCCTG--CAAATTATCTTCCAAAACTGATGAAGACATGAGGACATTCCATGACTGAACACAGTGAGTTACACGAA------CAACAAA--CAGCACTCCAAACTACTCCTAGATAGAGACAGTGATGCCAACATAGCCAAAGAGTCAGATGAGAT--GAATACATCAAACAGGGTAAGCAGTTCAACAAA-----AAGGAAGTATCTTTATGTGAACAACACAGTATGGTATCACT----------------GGAATAACTGAGTAGATTTCAGTGATGACTTTTTAAGAGTAC----CTCAGTTCTTCAATTAGAGGACTGTATCAATTAGTGGACTACATCAAAAACCAGCAGGTAATTGTATGTTACATTTAAGATACTCttaattaagaaagaaatttgtaGAA--TAAAAACCAAGGACTCAGGATACAACTTTCCATGTACCGTGACTCCAAAAGCATGTAAGTTTAAAGCTTTTATTCTCAGATAG--TGATATATCAAGCTAAATCTgaacaaagggggaaaaaaagacattgcatATTGGGACTACTAAGTTATAA-----------AAAATAACAGTGGTAGACATATGTGTACCAAACA------------------------GCATTGTACTAAACTTCATGAAACAAGCACTCC-----------TGATCATAAGAGA-------------------TCAGATGA---------ACATCAACAACTAGATA-----------AAATTAATCACAAAAATCTCAATGTTGAACCAGTGCTTTGACCTAACTGATTTTAATGCTACAGAGTATTCTATGCAATAAGATTAAAACACAA---CATACAGTCTTCTCAGGAGGTCAGTGGAacttc---aaaatagaccacatagtaGGCTATAAACC----TTTATTTAGTACAAAATGTTGAAAATCACCCCATG-ATGCTATCAGATAATAGCTCACTAAAAccagaaatcaatggcaaaagaaacgtC----------CATACACCTGTAA-TTGAAACACACAATCCA----GAGAACTCAGTACATCAccgaagaaatcaagaaaataaatattacctGGAATAAAATGACAATGCCTTTGCAATATG---GAACCTAT-----------AAagtagtcctaagaggaaaatttaaaaacataattgc-tCCTATTACAAACAAATTagtaagactgaaaaaaaaaac----tgataatgtatcatcaaaggctagaagacaacaataGTCCAAACTAAATTCA----------GCACAAGGTGGGCAATCATAAagattggagcagaaattaacaGAATTAAGAT--GAAAACTAATGCAAAGAATGAAACAa--------ctagttctttgaaagactaaattgAATAGATCAACATTTAAGTAAACTTacc--------catgaagaaaat--------------------------------------------------aaaacatccaCGTCACCA----------------------------------------------------------------------CACATAGTGGAGACTG--------TCAGAATCA-----------------------------CAATAGAGATAAAACC-------------CTACCAACTAAGCAGAGCACACTCCTTGGAAGATTCACCACTGAACTGTACAAGATGTCTTCAGAGAGGATATAGCATTAGTACTGTTCAAAATGaccaatgaaatggaaagggaacagTACTC--CCAAACTCATTTATGGAAGCTATCATTAACTCTGATGCAAAACCCAGACAAAAGTCCAACTAAAGAAGAAGACTACAGAC-AGTCTCATTAAGGTACACAG--GGAAAAACATTCCACAAGAGggtggcaaatagaatgcaac------------taATCATCTAAC----------AGCTTTGACCCTAAGGG-GCAAGGATGACTCTgtatgcaaaa--taataaatgcaattgAAGACATAGACAGAAGCAAGACATCAAACAACATCATCATGTCAATTAGtcaatgtacaaatatt-tttgagaaaatccaacattcattcataataaaaaaaatcctgcatAAAATAGTTACAGAATGACC----TTTAAGTTGATAAAATTGATTTATGACTAACTCCCAGGCAACATCATATTAAACTGGGAAAAGCTAATAGATGTTTCTTTAATGTGAGAGAGAAGACCAGGATATTTACTATCACCCTACTTCTTCAAATCAGTATCCAAAACATTGCCCAGAGCATTTaggaaagacaaataaataaaagcattatgtgcaggaaaggaagaattcatATTATCCTTATTTGAGGAAGACATGGTCCATTACATAGAAGT--CCCAAAAttttccaccaaaagactcctagaattaat---caaattcagcaatgtaacagGATGTAAAATCACTGTACAACAATCAATAACATTCTAGCATACCAATCACGAACACATTGAGAAATAAATTAGGAAGACGATGCCACTCACAat-gcatcaagaaaaattaaatacttaagaagTGAGCTTCTCTA---GAGTGAGAAACATGTGCAATAAAAGTTATGCCTTTATGACAAAAGAGGTCAAAGaaca--tcagaaagtggaaagacatcccgtGATCCAGGATAGTCAGAAACAACATTGTCAGaattgtgat

a score=78602
s chr3           127773778 3960 + 160039680 [encoded data, 4338 characters]
s HiC_scaffold_1 135385600 4030 + 233722169 [encoded data, 4338 characters]

a score=5388
s chr3           127773792 192 + 160039680 TGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAA
s HiC_scaffold_1  59227050 179 + 233722169 TGGTGAAGA-GAAAATTAATGGTGTAAAAGGC---------TGTTCAATAAAGTAATAACAGGAAACTTCCCGAATATTGAGAAAGATGTGGACATCTTTGTATAGGAGGTTTACAGAATCCCAAGCAGACAAGATCAGGAAAGCGCTTCACCACAGCATATTCTAGACAAAACTATCAA---ACAAAATGA

a score=26644
s chr3           127773803 1676 + 160039680 AAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAA--GCCTACAGAACTCCAAATAGACTGG--ACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAA---AATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACA---TTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAA---GTTATGAA--ACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATA---TAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAG---AGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291791 1571 + 233722169 AAGAAATACAGGATAATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgcAAATAA-------ATGAT-ATACAGGGACtggatttaaaatgcaaaataagcaTATAGCCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTACTGCTAAATCAGTTTTGCAAAACTTACTGA----------GTTTTGCAA------AACTTACTCAGGAGAGCATGAAAAGGAGTAAATCTT------------ATTAAAAGAGTCAATAAATCAGAAT-------CAAACAATCAATGAAATAACAGGGAGCAATACATACCATTCC-----------------AACTGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatataaacagca-------GCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTC--------ACAAACAGGCTAtctaaaaaatcagcaaagaaacaattgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGT---AAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACGGT-----------------TAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=18712
s chr3           127773815 2033 + 160039680 TTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACAT---AAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGG-AAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGA----------GCCTGGA-CAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCG-----GCCAAACTCTCA----------------------------ATTACCATAGAT---------------GGAGAAACCAAAGTATTC-----------------------CACGACA--------AAACCAAATTCACACAATA------TCTTT---------------------------------CCACGAATCCAGC---CCTTCAAAGGATAATAACAGAAAAGA-AGCAATACAAGGACGGAAATCACGCCCTA-------------------GAACAACTAAGAAAGTAATCA-------------TTCGA---CAAACCAAAAAG---------AAGACAGCC---ACAA---------------------------------------GAACAGAATGCC--AACTC-----------------------------------------------------TAACAACAAAAATAAAAGGAAGCAACAAT----TACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGG---------------CTACACAAACAG-GACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATT------GCACCTCA-------CACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACT------GATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAA----ATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGG---------TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA-ACACCATCA--GATC-CTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATC---AGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCT
s HiC_scaffold_1  41081651 2202 + 233722169 TTAAAGGCATAGAAAATTCATTGAATAAAATGATATCAGAAAATTCCCTAATTATGGGAAAGACATGGAGATCCATGA----ACAGGAGGCTTATAGAATCCTAAACAGACATCAcctgaaaatatctttattatgACATATTGCAATGAAACTGTCAAAAGCATGggacaaagaaagaattttaaaatctgaaagagaaaaatgctaaGTCACATTCAGATTTAACCCCAATTAGGATAGCAGCAGTTTCCTCAATGGAAATCCTACAGGCCAAGAGGCAATCAATTGTCCTGGGTCACattcta----agtcctgaaagaagATACCCACCAACCAAGATGACTATATCCAAGAAAGATAACctttcagaaaagagaaactaaagaACCTTCCAAGATAAGCAAAAATTTGACCTCCTTTCCGAAAGATGTTAAAGTATTCTCAAATTTGGATgtgaaagataacatgacagtgtGTAAAAGTTAAAATCCCATGAGAAACACTTCTTTTacacaaaagagaaatagaaaagtatCAAAAAGCTACCAATACAACTAACCATCAAGTCACAAAGATGAATAAGAGaggaatcaaaagcaaaaaatgacacactgtggtgcatgtctataatccaagCTACTTGGAGactaagcaggaggatcacaagttcaaagtcaacctaGACAACTTTGTTCAAAGTCAACCTAGACAACTTAGTCAGATTCTATCTcaagataaaatcaaataaataaaacagatttccTAGATtcaatcatcagtgaaagggaggaagaaagagagagagagagagaaagatagggGATATCAACAAAATGACAGGGATACATCAATCCCATAGCTTACAATAATAACCGTGAATGTAAATAGACTGAATTATCCAATCAACACATGCAGG-TGGCTGAATGGACAtttaagaccaaacaaaacaaaaagcaacccaACAATACGCC---TATAAAAAACTCACCT--GACCAATAAATAGGTGCTA----AAATTAGAAGAATGGAAAGTGATGCTTCAATATGATG----------ATATCCTAAAATAACTACGCCTA-ATCTTActaaatagaatataaaacaaaaactgt---aagagacaaagaagatcactatataATGATCAGGGGATCAATTCATTGTAAGACAAT---GATTGTAGATTTATATGTACCTAATGTCAGAGTaatcaattttataaaatgaacactATTAGACCTAAAGGGAGAAATGATAACAGTATTTCAATGATTCCAATATGATAACAGGAGATTTCAAT---TCACTCTCATCAATGAATAGACcataaaagaatcaacaaagaaacatcacAATTAAACTAC-----ACTGTAGAGCAAATGGAGCTAACA-------------CATTATACCCAAAAGTTGCAGAAGATAAGGTCTTTTCATCAGTGCACAGGATTTTCTCTAGAATAGACGGTATT-TATACCACAAAACAAATCTTAACAAAttcaaaaa-gttgaaatcataTTATGCATAGTTTCTGACCACAGTGGACTAAAACTAGAAGTGAGCCCTAGAACCtatacaaata------------------catggaaaatgaACAACACAAATTTG--------TTAGGTCACTGGGGAAATtagaagtaaa---------tttttaaaatttcgtGAAACAGGATGAAAATACACCAAAAGCAA---TATGAATTATAGT-----------------------TTAGAGCAATGTGTGTTTgcatgaaaata-------------atacaaa-----tgatGTTCCATGTCATAGATGTAATAAATCGATAACAAACCAAACCCAAGGTTAGTGGgaggaaataaataacaaagactagaacataaataaatgaaatagaaac-------------caagcaatcaatgaaaca--gaattggctttttaaattctttgaaaagattGACAATTCTTATAAAGCTATTTCTTGCTTAGTTTAAAG--ACAGAGAGAATAaccaaat----aaaattc----tgaaaacagAGCCAGTACAACTGATacaacagaaatacaaagaaatcatGAAGGATCGCTTGAACAA----CTATATgctaaaaaattgtaaaatctagAAGGAACGGACAAATTTCTTCACCCGCATGACCTACCAAAATTGAACCTAGAAGATATAGCTAA--ACTGGAATAAACCTGTAATAAGTAGTGAGGTGGAATCGGTAATAAAAAATCTTCAGCAGAGAAAAAGTCCAAGACCACTTGACTCCTGCATTGAATTTTACCAAACGTTTAAAGAAGAGCTAAAGCCAATTCT

a score=31690
s chr3           127773815 2466 + 160039680 TTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCA--TACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGA-AGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA----ACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAAT-ACAAGGACGGAAAT-------------CACGCCCTAGAACAAC-------------TAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACT-CAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTA-----------------------------------------------------------------------------------------------------TCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAG--GACAGATCGTGGAAACAGAAACTAAACAGGGACA--CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG----CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGA--TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGA----AGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG---ACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT--CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA
s HiC_scaffold_1 116834066 2368 + 233722169 TTCAAAGGTCATAAAACATATTCACT-------TATAAGAAGCTTTTCCAAAGCTAGGTAAATAACT--CAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAt--atccaacaaaga-aaaatacaaaaagttgtTACATAAAAAG----AGCAGCA---AAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATACAATAGAGAAAATAGT----TAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaatta--------aacaaaaggaaaaaaaacaaaagaattggc-----ATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAAT--ACTGAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagatta----atAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGAACAA--CAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCACAG---------------------AACAAAAACT-------------------GCTGTACATATAAGGAAAAACATATCAAT-------------------------------------------ACAATTACAGTGAGAAA-TTCAATAACCTACTCTC---AAAACTAGCAggtcaacaagacaaaaaattagcaaaactTATCAGTTAAAC-----AATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaat-tctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAACA-----GGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgat-----ttttaaaaa-----------------ccctg-cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=48023
s chr3           127773835 4344 + 160039680 [encoded data, 4775 characters]
s HiC_scaffold_1  48707951 4261 + 233722169 [encoded data, 4775 characters]

a score=36780
s chr3           127773839 2937 + 160039680 ACAAAATAATAG------AAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAA--GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACT--AAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCA---------AAGGATA------ATAACAGAAAAGAAGCAATACAAGGACGG-------AAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT---CAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAAC-----------AAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGG-TCACAAA-ACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAA---AAAAGGAAGCAAATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCA-TTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGA-------------------------CTAGA--------------------------------------------CAAGGCT-------------------------------------------------------------------------------------------------------------------GCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaaga----------tctcagaagatgggaagat
s HiC_scaffold_1 171883937 2751 + 233722169 actgaataatagccaaaaaaaaaaactttccaaatatggaGAAAGAG--TCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAA-GTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGccaaactagcactccaaaatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCA-AATGGTCCAACCAAATGACT-------ACAGCATACAGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagaga---aaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCC-AAATAGAAAACATACTCATCTCATAAAGGCATACTTAAGTATTCATAAGGA-gtcaaaattattccatgcatac-aTCAGGTCATAGT-GCATAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACACAAGAACTT-TGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaacagtgaactgaaata--aataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaa-----------------caataaacaaa--caagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGT-TCT---CAGATAACAG------AAATT----------------------------------------------------------------------------ATCAAAAATGAAccaaggccaga--gatttagctcagcagcccagcagg--------------------------------------------------------------------------------tgtgaagtcatga-----------------------------------------------------------------------------------------------------gttcacaGAGCGCagtaaatcattaaaaagatcatacatcaaaACCAACAAGGGTTTCTCC--------CAGGGATGATTCAACAgac--aaattaataaatgcaatGTGTCACATAGACAGAAGCAAA--------------AATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAAATGCAACA---ATTCATGGTAAAag-tctgaagaaaataggtatagaatgATCTTTTCTGAAGCTGGTAAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgg-gaaaaactgaaagctttccctctaaagcCAGGAACACagccaagcgtggtggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataaaataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaaggg-tacgtacaagaaaa-aagaaataaaattatcattattttcagataacaTGAGCGTCTACAT-AGAAAACCAAAAAATTCCAC---------TCCAAAATTAATATCCA---------AAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaa--------caggaaCTAATCTAAGACAGTGAAAGTCCTTTACAATGAAAACTCC---TATGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=5512
s chr3           127773840 309 + 160039680 CAAAATAATAGAAGAAAAC----------TTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGAC-ACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT----TATA-------CAGACACTAAGAGAACACAAA---TGCCAGCCCAGGCTACTATA
s HiC_scaffold_1 137704175 328 + 233722169 CAAAGTCATTGAAAATAATGACTACCATGTTCTCAGTTCTTTGAAGAGATATAAACATCTAGACAGAACAATTTCAAAAGACACCAACTAGTTTCAACTAAAAA------CCGTCACAACCATATTGCACTCAAAATGACTGAAGTACAAAACAAAAGGAGAATTTCAAAATCAGCAAGAGAACAGAATTAACTTATATATAAAGGGAGATCTGTTAGACTTACAGaagatttctcagcagaaaccttaCAGGAAAGAAGACAGTAGGGTGATGTATGATATATTCAGTCCTgaaatcagaaacaaacaaaaattgtcaatcaagaatattata

a score=10018
s chr3           127773842 758 + 160039680 AAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAA--TAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT-TATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTA-TTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA--------AAAGAAGCAATACAAGG-----ACGGAAATCACGCCCTAGAACA-ACTAAGAAAGT--AATCA---TTCGACAAACCAAAAAGAAGA--CAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGGACTGAAGAAACAGGCTGGAGTAGCCAT
s HiC_scaffold_1 129057714 731 + 233722169 AAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATA--------GAAAAAAACCCTGAAGTCCAACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaa-taaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaagaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTT---TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta----aaatt--aAGACtcaaaaacagtattccatgcaacatgaACCTAA-AAATAAGTAGGAGTTGAcat

a score=106396
s chr3           127773842 4303 + 160039680 [encoded data, 4831 characters]
s HiC_scaffold_1 195237037 4679 + 233722169 [encoded data, 4831 characters]

a score=54065
s chr3           127773852 2788 + 160039680 AGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAG------------AACTCCAAATAGACTGGACCA-----------------GAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA----ACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAA--------GGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCAC----GCCCTAGAACAACTAAGAAAGTAATCA-TTCGACAAACCAAAAAGAAGACAGCCACAAG--AACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATT----ACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT--CAGGGAAAAAGAC--AGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATG-CAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCTTCAAA-GGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAA---CTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGC--------TAGACTCACTAAAGGGCACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA----TCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA-AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAAC
s HiC_scaffold_1 128206448 2880 + 233722169 aggaaacttcccaagcatggaaaagga-------------ATTTGAGAGGCAGACAAGTGAGACATAtcaactccaattagccatgattaaaacaaagaaacaagaagagaaaaaacaccTTACACTGAGGCATATAATTGTCAggattccaaaaattcaacataggaaaataacattaaaaagtattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGGAAAggttgcagtgaagtatttcaagccctgaaagaacaTACCCCCCAGCACAGGTTGATATAATCTGtgaaactttccttcaaaattggtggagaaacaagatacttccatgacaaagaacacctggttga---aattcatgaccaccaagccaacactCCAAAAACATTCTGAAGACTAATATACAAAGAGAA---CAAAGACTCCAATTTCATGAGCCCCAAGAGATTTAATCCATcaagcaaggcaagcaattaaacagaggggaaacaAAAGGGAACTGA----------TGACAGAGAAATTAGATGACAGAAATAAGTTAACACACATCCTTCATAATCACCACTGTTAGtggactcaattcaccaatcaaaagaaacagattggcagaatggctCAGGAAACAAGATCCAGggttggagatacagctcagtggcacagcgcctactTAGCAAGATCAAGCTCATTAGTTCcttgcccagtaccaaaaacaaaagaaaagagaaacaagatccaacaatatgcggCATACAAGAAATATGTTTAACATGGAAAGATACTTATACATTAAC----AGTCAAAGTgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatttgcagtcCAACTGga-ttcaagccaaaactgatcaagcCA--CAAAGCAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataacaatcataaatatgtatgcccCCCAGGACCAGAGCAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTACTGCCACAAAATGGGCAGATC-----------AACTAGACGACAAATCAGAAAAAGAACTGAGTCAAACTTTTGAACACATGGACTTAGTAGTTGTCTACAGAGTTTTCCGCCCCACCActtcataatacacattcttctccaaTCCTcaagttttgttttccaaaataacCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaagaaactgaaatcattCCATGCATATTAGCAGACCCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAATGTCC-TAcgaatatggaaattaaataacatccttgtgaacaaccagtggatcacagataaaattaaagaacaaattagcaAGTTTCTACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccatacagagaatgaatgaattaaagagGTAGTTCTT--GGAAGATGAAGTAAAACAGACAACCTCTTAGCAAacattgtaaaattttaaaaaggaa-----acaaagtcttagattcatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATCCCTATGTC-ATATGAATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAATGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgactAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGAACTACCTAATGCTGCCACTCCTCAAACTCTAGTGAAGTCGAAAGGTAATCAGTACTC--CCTaagtcatccctggaagcaagcattac-ctgtTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAATCTACCTAATGAGCATAGACAGAAGAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACCAGgtaggattcatcctagggatgcagggaGAGCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAACCAAGGATAAAAACCACTCAATCATCTCATTAAGCACAGAAAAATCATCAGTTAAATGCCAACACCCCTTCAAGAGAAAAACTGTACAGAATATCCAACTATATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatccaTTTTAGTAGCATAGCTGGGTACGAAATCAACACACAAATATCAACAGCATGCCTATACAAATGtaacaaactcagtgagagagaaattaaggaaac

a score=27743
s chr3           127773863 1966 + 160039680 CAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATC--AGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATT-CCACGACAA------------AACCAAATTCA-------CACAATATCTTTCCACGAATCC--------AGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATAC-----------AAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGA--CTGAA-GAAACAGGCTGGAGTAGCCATTTTAATATCG----------------------GATAAAA--------------------------------------TCGACTTCC-----------------------AACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT--------TAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACAC-CACTTTCTTCAAAGGACAGATCG--TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAAT-------------------------------------------------------------------------------------------------------AGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA-AGAAGAAACA-TGAG---------ACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG-----------CAAATTCACCCAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCAGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT----CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881350 2284 + 233722169 caaaaaaaaaaaaaaaaagga--------aagaaagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-GCCATATTGTTCTCTAAGTACCAGGAATTCATCA--CAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTCCTt---cagaaatgaataaag-aaagtatttccatgacaaggaacacatctaaaaaaaattcatgaccatcataacagcatttaaaaaattctcaagtgTAAcctagaaagaaataatga-----agccAGCAATACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaag-----------------gaaaaggaaaaaataaggagATCAGCAGAAGGACTGTAATGG----gatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA----AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggtatagacat----gaaaaaatcaga-taaaca------ccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAACAGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAGACTCAAAAcc------atacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=65033
s chr3           127773867 3373 + 160039680 CATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAA-TGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA--------AAAGAAGCAATACAAGGACGGAAATCAC---------GCCCTAGAACAACTAAGAAAGTAATCATTCGACAA----------------------------ACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCT----------AACAACAAA--------------------AATAAAAGGAAGCAACAAT-------------------------------------------------TACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTC---CAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAAT-------------------------TCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCAC-CTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAA----------------TAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAG------CAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTT-AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAA-CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAA---------------GTATTAGCCAGAGCAATTCGA----------CAACAAAAGG---------------------AGATCAAGGG---------------------------------------------------GATACAAATTGGAAAA------------------GAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATA-----------------------------------------------------------------------------------------------------------------------------------AACTCAAACAAGT--------------------CAATG--------------------------------------------------------GCCTTTCTCTATACA------------AAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttgg-cgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtc--------tggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtac-----------------------------------tggtat-------------agagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaa---------gacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttg
s HiC_scaffold_1 133193493 3825 + 233722169 CAAAGAAAAAGGGGTTGTCACA--CAGATAATTGGCC-ATATAGCTCCAgttagccatgat---aaaaaaattacagcaaaaCATGTAAAAGTCATGATTCCAGAAACTCAAAATAAGATCAtaat--taaaagttgttagagaaaagaaacaaatcacctacaaaggaaagcccatcagaatcacagctaacTTCTCACAAG---CCCTCAAATT---AAGGacttgaagtaaaatatttaaagccctaaaggaaaacaacctttcaacccagattgatgtaacctataaaactatctttcaaaattgatggagaaataagatacttctatgaaaaGAATATCTGAGTA-AATTTTtggccaccaaaccagcactctaaaATGTTCTCACGCatgttctagaaagagataacaaagaatTACAACTCATAAGGCCaaggctttagctcagtggcccaagcacctacctggcaagtgcaaggtcatgagtttgatctctgctaccaaaaaaaagaaaaaaaaaaaaaaagaatacaactcCTTGAATcccaagacaatgaatgcaattggcaaggcaaacaaataaaaggaagaaaaaataagagagctaacaacagaaaaatatcatGACAATGACtgaataagtcaatacatatcagttataaccactaatgttaatgatctcaattcatcaatcaaaagaaaca--ttggcagaatggatcaagaagcaagatgcaacAATGTGCTGCATAAAGGAAACacattttacttaaaaaagaaatgcatagac--AGAATCAAAGAGTGGGAAACAATAGTCCATGccacaagaacccagaaaaaagcagaagtagctattctatttgcagacaaagtggatttcatcCAAGTCAGAGT----AAGAGAGACAAAGGG---CACTACATCCTTATGAAAGa-------atctaagaggaagagataacatatatatatatatatatatatatatatatatatatatacagcaaATACTAATGCATCCAACtacatataaaaaatattaatgga-cacgaaaaatcaaataaacactaatacaattatattggGGTACTTC--CATACCTCCTGCCACAAG---TAGATCATCTAGACAAAAAGTTAACAATGTAATATTAGAACAGAACctaacttttgaacaaatggacttggtagatacctacagagtgttccaccctacaacatcagaatacacattcttctcagctacacacgGGATGTTCTGCAAAACTGTCCACATACTATCTCATAGAACATaactaagtaaatgaaaaggaattgaaatt-ccccatgcatattatcagaccatagtgcaacaaaattggaaattgatagtaaaagaaaccaaaagaactTCATAAACTGATGGAAATTAAAAGTggcatattaaaaataatatccttctgaacaaccagtgggtcacagatgaaattaaagacaacattag----TTTCTACAagtaaatgataatgccagtgcAACATATCAGGACTTATGGGAcagaatgaaagcagtccta-gagTGAAATTTTTAGCGGTGAGCACTCATGTCACAAAAAATGAGCAagctcaaacaaaacaaaacactttaatGTTGCACCTTGAGCttctagaaagaaaagaa-caagtcaagccca---------acaaaagaaaattataaagatcagagcaaaaattaatgcaactgagactaagaaaacaatacaaagaatcaatgaatcaaagagtt----ctttgaaagattaaataaaattgataaaacccttagctaaccttatcaaaaaacgAAAGATGCAAATcc----------atttaggaatgaaaaagacGAAATCACATCAGATCCTGCAGGAATCCAGAAGACCATCTATCCTTACTTCaagaacctgtactctaataagatgtaaaatgcagaagaaatggatagattcctagatatatatgagttg----agctaaatcaagaagatataaaatttctaaataaaccaatatcagtcaatgaaattgaagatgtaattaaaaaaccTATCAAAAAATCAAAGCCCAGGCTCTGATAgatttcactgctgaattcta-caaaaatttgGAGAGGACCTAATACcacttct---taaactctttaatgaaactgaaagggaag-cactattcccaaattcattcctggaagcaagaattaccctgataccaaaagcagacaaagacccaactgagaaaaaaatcctaCAGGCCAatt--------gaacataaatgcaaaattcctcaataataT-ATTGCAAACAGAATGTaacaattcatcaagaagattatttaTCATGACCAAATAGGACTCATCCCAGGGGtgca------------tatac--aaatcaataaatgtaatacaccatattaacagagccaaggacaaaaatcatatgataatCTCAATCAATGCAGAAAAAGTGTTTGACAACGTCTGACACCCATTCATGGTAAAacccctacagaaaatcagaatacatggtctttatctgaAACTGAT-AAAGCCATCTACTATACATCAACAGCCAACATcctaataaatggacaaaaactgaaagctttcactctaaaatca-ggacaagataaggatgtccactg--tcacttcTCATTCCGTAAGGTTCTGGAAACAGTGTGAGCAACTATATaagagagaagaataaaagaaataaatgtaaaaaaaggaagaagtggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccgataaaaattaaaaaaaaataaaaataaaaaaaggaagaagttaaattatcatgatttgTAGATGATATGATGCTCTACACAGAAGCAACTAAAAATTATACCAAAAGACTTCCAGATTTCATAATCAAGTTCAGCAGTGttactggatacaaagtcaacattcaaaaatcacttacatttaagtgtgtaagatagataatcatactactaagtttttgttggatcatgagCAGAATGGTTTTGCACTATCATTGTTTGACtgcccactttttatgctttgattttgtaacttgaacaactatttctaagatgacaatatgcaatgtatcaactagtgatttcttagtgttattattttttttgatattctgtattatttctacccttttctgtaTAGCCTTCAGGTACAagaat-aacaaactcacagagagagtaAGTATGAAA---CTTTCACAATTATATCaagaagaatgaaatacttaggaaatcaatctaatgaaggacgAAAAGGGCCCCTATGTGGAAAACTATAGCCCTCTGAAAAAGaggattgaagaggatattagaaaatagaaaggtatcccttgctcttgggtaggaagaaccaatatagtgagaATGGCCATAATTCCAACATTGGTATACAGGTTTAATGCTATCCTGGACAAAATTCCAACAgtatatcttacagaattagagagaG-AATTTTCAGAATTATCAGTTCATTTGGatccaaaagagacctagaatagcaaaggcaattctgagcaacagaGATAAAA------CAGGGAGCATCACAAgccctcacttgaaattatactaaaaaccTAGTATGTTAAAAATAGCatagtaccacaaaataaaacaaaacataacaaaccaaacaaacaatattaaaaaaaaaaaaaaaaacagatctgaggaccAGTGGTATAGATTAGAAGCTGCAGAAGCAACTCCAAACA--------TACTT-------ACCAAGGAAGGTATAAACACCT--TTGACAAAGGTGTTTATTGAAAGCCTATTcaataa--aatgctgaaaaaactggatttctacatgctgaagatttaAAATTAGACC-TACATCTCTTGTTG

a score=32211
s chr3           127773968 2425 + 160039680 CAAATGCACCAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAAT-------------------AACAGAAAAGA----AGCAAT-------ACAAGGACGGAAATCACGCCCTAGAACAACTAAGAAAGTAATCATTCG--ACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTA---------------CACAAACAGGACCCA------------------------------------------ACATTC----------------------------------------------TGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAA-AGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATT----GGTCACAAAACAGGCCTCAATAGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAA-ACAT-GAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAA--GCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAAAGGGCACA------GGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT-----------------GAAGAAATCCAAAAC-----------ACCATCAGATCCTTC----------------------------------TACAAAAGGCTAT-----ACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTA-AAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA----GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAG
s HiC_scaffold_1  77435158 2503 + 233722169 caaaaattcaaaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaattaatgaa-aaataaagacctCCCTTGATAAGTGTAAATTATAGACATTTATGACCCCTAATCCAGCATTGCAGAAAATACTTAAGTTAATcttaaacacagataaaaaagagaataacaattatgagaccaaagaaagaaat---gtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCAAATagtagaaa-----aaaaacaaaatg---------------------ataggaattagTACATACCTTCCACAACTATCA--TAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG---ACAG--------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAAT-----ATACACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaaagaaaa------------------cacatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaata----aataatataatgatatatctcaaggtcctagaaaaataagaacaaccaATCTGAAACcaataagaat-----gaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttcaatccctggtaccaaa----aaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaaatattttaa------aaagaagcataaataataagcaaaagattaatacagtaataaaaatcctaTCAATTCAGAAATCCCTGTTA----ATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAGCCAGAT-AGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA----GAGTGAATCAAGA--GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=84891
s chr3           127773979 3574 + 160039680 AATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAAT-----CACGCCCTAGAACAAC-TAAGAAAGTAATCATTCGACAAACCAAA------AAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA---ATGGA----CTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTG----------GGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAA--------CAGGGACACAGTGAAACT-AACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGG-----ATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACA-------CATCTAAAAGCCCTAGAAAAAAAGGAAGC--------AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGT--TTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATA-AGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGA-TAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataa---aaactgcatggtactggtata-gagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa-cagca----atggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtg
s HiC_scaffold_1 218598455 3531 + 233722169 AATAACAACACATTATTAAAacctgtaagagaaaagaaacagaatacctacaaagaaaagtccaCGAAAATCACATAAGAATTCTCTACACAAATCCTCAAAtgaagaagagcttgaa-----gtactTCAAGTCTTGaatgaaaacaacttccaacccagattgatgtagcctacaaaactatctttgacaactgatggagaaatgaaacacatacatgacaaagaacaactaaagaaattcatgtctatcAAGTCAAACCTCCAAAGAGTAcgga---aagatattctagacagatacaaaaatgaccacaattccaagaacaacatcaGAAAAAAACCACCC-ACAAAgcagagcaagcaattaaacagaggaaacAACAGGGAACCAACAGCAAAAAATAACGTGACAAAGATAACCCAAtacatatcacttataaccattaatgtaaatggcctgcattcaccaatcaaaagaaatatattgGCATAATGAACCCAGAAACAATATCTAGCAATAGGctgaatacaagaaacacatttaacttaaaaaagaaactcatagactgaaagtgaaaggacagaaaataataCTCTATGCAACAGATAGGTACCCTGAAGaca---gcaggggtagctattctatttgcagacaatgtaaacttcaaaccaagaaagatcaaaagagataatgaaTGTTATTATACACTTACTAGgtg-aaaattcaagagaaagagataaaaatcataaatatatatgtaccaaatatgggagaactaaactatgtaagacaaatgtcaacagacatgaaaaaaa-----------taagcaataacaatgaCTATAACAGGGGGACTTTAATACCACATTGTAA-CAatagatagatcaattagacaaaaaaaaaaaaaaacagcaaagaagcaacagaattgaaccaaacttgt-aaataaatggacttagtaaactTTTAAAGAGTATttcaccataaaaaaaaaaatcttaattcacatgcttctcagttgcacatgggccattgtctaaaacagaccatatactaggccatagaacatgcttaggtaaatgcaaaggaattaaagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCAGGAAA------ACAGCACATGC--ACAAATATACAACGTAATGTGCATCTGAACTTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaa-agaaagaaaagactcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaagaaggtataaaaagtTTGAAtaa---cat------taatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaat-aaatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaaa-aagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaatacaattaacatatcttacagatctagaaaaaaacattccc-------tttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaaagtc----tttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtca-----aaatggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTCA-----ATAGGGGTAGACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttcaa-----agaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=47017
s chr3           127774010 2639 + 160039680 AGAAAGGTCAAGTAAC---ATATAAAGGAAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATT-CCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATA----------------ACAGAAAAGAAGCA----ATACAAGGACGGAAATCACGCCCTAGAACAACTA--------AGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGA-ATGCCAACTCTAACAACAAA--AATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT----TAGAGACACTTTAG--TAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGA-----TCTTCAATAACAACATAAATAAT----GGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCAC-AGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACC----AAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCA---------------------------------------------------------AGAACACA--------------------------------------------------TTAAAGCAATCATCCATC------------------------------------------------------------------------------CTGACCAAGTA---------------------------------------------------------------------------------------------------------------------------------GGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTT
s HiC_scaffold_1  66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatat-aaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT--GGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAG---CTAAAAACAC-----AGAACAACTAGTGAAATCAGTGAATaaacat-caacaaagaaacataaggaaaagaaaaacaaaggatacaccaac-ataaaaagaaagcaatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagataatCA--------------AAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACACA--------AGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAATAAACACTA--------ACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagttc--gAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAAA--GAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaacaa-taaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaaga----aaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=27723
s chr3           127774041 1732 + 160039680 TATCAGAATTACACCAGACTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATG----CCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGA-----------AAAGAAGCAATACAAGGACGG----AAATCACG---CCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAA------CTCTAACAACAAAAATAAAAGG--AAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGA-CACT--TTAGT----AAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGA---ATATTT-TATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGG-------AAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAAC
s HiC_scaffold_1 227404805 1640 + 233722169 tatcagaatttcagcagacttctcaatacaaatctTAAAGGCCAGAAGAGCATGTGAAG----TATTTCAGCACTAA----ACACAAATAACGTCCAACCTCAGCTAACCTACCCA-CAAAGCTTTCTTTCAGAATAGGTGAAGAAATAAGAGTATTTCACAAAAAAGACCAGCTCAAGAGACTT------ATGACTCCAGCATTCCAAAAAGCACTCACCAATTTCCTAGGCAGAAGACGTGAAACCAAAACAGGTCAAAACCTCGTGACACAAAAACACCAAGTAAGGTCAACAGGtaagcaacaaaaaataa--------caagaaaagaaaaataagcaagtcAGTAACAGAGAAGGCAATAGAGCAAACAACCAACACTTCTCAGCGG-GCCTCTCAATGTTAATGACCTCAATTCCCCATTTAAAAGATGAGGATTCATAGACGGGATCAGAAAACAGAATCCAACTGTCTGCAATGTGCAAGAAGTTCACCTAATGCAAACAGatgttcacagactgaaaattaaagg----------GTACTTCATGCACCAAGACCT-GGAAACAAA-TGGGGTAGCAACTTTAATCCCAGAC-ATGTAAACTTCAAGCTAAAGCTGACTAAAAGAGACAAAGGAGGCCACTACACCCTGCTCCAGGGAAGGATGTATCAGGAAGAAA---CACTGGTAAGTATTTCTTCACTGAGTATCAGGGCACCTACCTTCATAAAACAGCACTGCTGAATACAAAAGACTCCAAACATG--------TTAACACGCCCAGAGTGGG-GATCTTAGCACCCCACTTTCAC--AAAGTCAGGTC----AACTAAACAATAATCACAGAAACATTAGAATTAAACCACACCCTCAAACATACCGGTGTACTTGATATCTACAGATAGATACCTACATCCCAACACAGCACAGTACACGTTCTTTTCCGCAGCACACGGTACTTTTTGCAAGATAGATCACACATTAGTCCACAAAGcctgcttaagtaaatataaaggttTTGAAATTATCCTGTGTGTACTCTCAGACCACCATGCAATGAAAATAG-----AGTTgcagaagaaatagcagaaaaggTAGAAGCATCTGGAAAACTAACAACACACCTATACACAAC-CAGTGATTATAGAAAAAGTCAAGAAA--------------TTTA-----------------------AACTCACCAAAAACTCTGGGACCCCAAGAAAGCAGACCCGAGAGAAAAGTTCATTGCAAACAATGCCTCCATCAGGAAAATGGAGCAAGCTCCAGTGAATAACCCCATGAGGAATTCTAAAATACTTGAGAAACA-----CAATTCCGGCCAAAACAAATTAA-GGAGGGAAACTAT-aacattagagcagaaatcaatgacatggaggctaaaaacaaacaaaaataatgcacAGATCGGCAAATCAAAgcactggttctttgaaagaataaacaaaacagataggCCCG----AGGACTTACCACATAGTGCAG-----------------------CTAGAAATGCAAAAGATGAAGTCACAACAGACACTGTCAAAATCCagaatatagtaa----ctactttaaaaaacTCAATTCCAACAAATtggcaaattttaaagaaatag----attcctagatgcatataaattaccaaagctaactcaagaagacacaaatatgCTAGACAACCCAGTGACAAGCAATGAAAtcaacacagtaaaaaggaaTCTGTcagc

a score=50268
s chr3           127774087 3723 + 160039680 AGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA---------ACCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATA-----------ATAACAGAAAAGAAGCAATACAAGGACGGA---AATCACGCCCTAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTT---TTCCT----TAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTT----CCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACC--TTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA-CAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAA-CACATCTAAAAGCCCTAGAAAAAAAGGAA----GCAAATTCA---CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACT---CAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGA--TGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG---------ATAAAAGTTTTGGAAAGATCAGGAATTC--AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAA-GCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATA-AAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgt----atgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatg--------aacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa---cagcaatggcttgtgct------------gtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatct-ttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtggga
s HiC_scaffold_1 228955087 3367 + 233722169 AAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACAA---------TCATCAAACTAGGACTACAAAACATATTCAATCCTACACAGCAAGAGGGAAAAACTATGAAAAAGGATAGACTCAATAATTAATCTAAATGGGAGAGT---TGTttcacaagagagaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaattaaaatgataTCTATGTAATAAGTG---TGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATAC-------TCCTCAAA---TAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT-ACCCATAT---TGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGG--GAAATTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAGG-TCAATGAAAAAAAG------TTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAG-ATGATAATAGGCCATGAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTTCCAAAAGCAatacaataaatcaataaa--------------tgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgt-aaagagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCCA-CAGAAGACTCTCAGAACTAATAGATAAATTCAGCCAAGTG---GAATATACaaattaatacacaaaaatcaagaacattacccaaagtgatatatatata---------------------------------cttaataa----aaataaattgaaatatc--------------------------aaagtttttttttcataacTAGAAAGTCAAGTCT-------------------AAAATTCCTAGAGA-----------------------------------------------------------ACCAAAAGAGACCCA-----------------------------------------------------GAGTAGC------CAAAGCTATCCTgagcaacaagaaaac-----aaacaaacaa------caacaacaaaaaaa---caggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACATAGGGGAAA-CACAGGACCCATAGGCGCA-GGGAAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaagaaAA-----TAATGAGCCAA------CTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACT---CAACAGGTGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=81931
s chr3           127774116 4163 + 160039680 [encoded data, 4666 characters]
s HiC_scaffold_1 130105087 4470 + 233722169 [encoded data, 4666 characters]

a score=43863
s chr3           127774142 2632 + 160039680 TACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCAC-GACAAAACCAAATTCACACAATATCTTT----CCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAACTAAGA-----AAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAA-CAACAAAAA---------TAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA--ATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT--TAGAGACACTTTAG----TAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTA--AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAA----TAACACTCTTC-----TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-------------------------------------------GACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCT---------ATGGGACACAAT---------------------------------------------------------GAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCA-AATTCAC--CCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATC-CTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTA---ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCC-TAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAG--TCACAAATaat--ataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctga----agaaagaaattaaggaagatctcagaagatgggaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCATTGAAAATAACAACCTTAAA----ATTTTGAAGACCACTAAGTGAGCACTACAAAAG-TACTTAAAGAAATCCAG-AAGACAATGAGG----------CCCAAAACATCAAAGAGACTAAAGGAATGAATACATTAATCATGGAGAGcaggaaagcaaaagcaaaaattaaaaactaaacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCAT---CAATAACAGGTAC--ATTGAAAATTagatgatggaaaacaatacttcatgcaatgaAACACTGAA-AGACAG-CAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATTTTTAACACAAATACTGCTGCACATAGAGGTCAGA---TAAACAGC----CACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCAACTGGACA-AAACTATCAGCAAAGAATATGAGAGTTGAACTATACCTCTGAA-CAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaacca-tGGCAA-AGGAATCACAGAATTTTCTCAACCATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatg-------gataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca---gaaata--------tagca-----ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAG------------TGGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACCT-TACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=48585
s chr3           127774292 3249 + 160039680 TAGAACAACTAAGAAAGTAATCATTCGACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCA----------AGAGGAACTCTCAATTCTGAATAT-CTACGCACCAAATGCAAGG----GCAGCCACATTCAT-TAGAGACACTTTAGTAAAGCTCAAAGCATACAT-TGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGT--------------TATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTG--CCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACC--AGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA----TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA--CATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttac--ctatcctaaatcagataggggactaatatccaacatatataaagaa
s HiC_scaffold_1 216972171 2990 + 233722169 TAGGAGGGGTGAATAGGTAAGCAGAAGGGGGACAAGAAAGGAACCAGCAACAGGAACATAATGAAGAC---AATTTCAGAAATAGGTTGA---------CATCTACCAGTAATATCTCTC----TAAATGGTGCAAAATCCCTAATCAAATGA----GATTGCTgttgtggctgaaaagataaagcTGTGTGGTATGCTCTAAACAAAAGACACAATTAATCCAAAAATACATTCATGCACTagaaatagaagaatgaaaaacaatattctatgcaacTAAAGCCTAAAAACAAGCAGGAATAGTTATCTTATTTTCACA-AAAAGTGCATTTAaactaaaactgatcagaagagggaaagaaaaacataGCTTATTGGTTAT-GGCAAAATTCaacatatatatgttatatatgttttatatattatatatgttgtaTACCATATAtgatattttgcatatatatatatatatatatatatatatatatacacacacacacatataccccTCAGTcacacata-------------aaacaaatattactggACCTGAGAGATTAGATAAACA--------ACACAATTACAGTTGGACAACCTCAAatattagttatttatttattgaacaaGTGGAgctaatagatatctacagagtgttccattcaacaacaaca--acactcaTTCTTCTCAGTAGCCCAAAAAACTTTCTCCACAATAGACCATATATCACCCCACAAAGCATGGTT-AATAAATACAAGTATCTGCAGCTTAA------------ATCAGATTATAacgcaatgaaactagaaatcaagcAAAAAATCAGAGATATTATTCAAACAT----GAGgacatgaaataatacatttt--aataatcaGTCagccacagaagaaatcaagaaagaagttAGAAAGCTCCTGCAATCAAATGACAATACTGATATGGCGTAACATATCCTGTGG-ACACAGTGAAAAAAGCCGTAAGAGTGACTCTTACAGTTATGAATATTCATGTAGGAAAAAATA-GAGCAATCCCAGACAAATAACCCAACGA----------GGTCCCAGATAAACAAGAA--CAATTCA------------AAGCTTctataagaaatgaaattaaaaggatgagATTGG--AAGTTATGATATTGAGaatga---aaaaatacaacaaattgaagatctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTTACCAGA---------------------------AAAAGTTGAAATTAAA--------------------TCTATCAAAGTCCTCAAGATCATTAACAACCTCTTTGAAAGTAAGTGCTGCATTAAATTGGAGAATCCAGATGAAATAGATAGATTtctagatatatatatacattgccAAAACgaaaccaagaaaatataaaagctgTGAATAATTCAATAACAGGCAataaaattgaagcagtaatgAAAACTT----------------------ACCTGATAGATTCATTGTTTAATCCTACAAGAACTTCAAGATGAATTTAACgccaatactttttaaattttttaatgaaaccaAAGAGGA--GTACTCT--TCAAATCATTTCTAGAAGATAGCACCACTTACCCTGATTCTAAAACCATTCTAACACCCAAGTAGGAAAGAAAACTACAGAGCAATCCTTTTAATGAACATGAATGCAAAAACTTCCAACAAGATTCTGGataaacaaat---------catcaaaaacattGTTTATCATAACCAAAATGGCTTTAGTCTAGTGATGTAATGGTGg-ccaacatatgcaaatcaataaatttaatagacaacg-aaacagaagcaaggacaaataTCATATGATCATCACAACAGA-----GAAAAATCTTTGAGAAG---TGAAACACATTCATAACAAAAACCCTG--AAGATCta---------------atctcaatctgataagagcCAATTCTGGTAAACCTTctgccaatatcatactaaaaggGGGAATGCTGAAAGAATTCCCTCTAAAATTGcaaagaagacaaggatgtccg----------aCAGTTTCTATTCAGTGTACTCAAAACATGAGCTAGAACAAT----CAAGagaagaagataaaaaagaaatgtgtgggaaagaaagaagtc---atgttactatttgcagatgactcgATCCTTTATCTGAAAGACTCCAAAAATTCCACT--AAGATTTTTAGAACTGATAATCATATTCAGCAGTACAGTAGGACACAAAGTTAACATACGAtaatcagtagcatttctgtgCACCAATAACATactcacagagaaggaa-------aaataataccattcacaacAG-CACTGAGAAAAAGTAATACTTACAAATTAACCTATCTAAAG---------------------AAAACTACAGCT-Tctgaa-aaagagattgaaaagaaTACCAGA-------------TCACTTTTTCCTAAATAAGCAGAACCTATATTGTTGAAAATAATCACACTTTCAAAActcatatataaatttaatttattcccAATAAAAATGGGagcagcattcctcacagaactagaaaaa--aatcctaaaattcatttggaaccagaagagatccagcatatcaaaagaaatcctGGTCAACAGAAGGAAATCAAAAGCCATCA-CACTCcagatttcattttatattgcaaagctacagtgataaaaacagtattctGTTGGCATAAAG-CAGGTATGTAGGTCAGTGAAACAGAG-AGAGGCCGCAGAAATGCCCCGAGGCACAttcagccatctgatctttgacaaagggaccaaaaaatTACACTGAAGAAAAGATAACCACTC--ACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGA--------------CTATCCCTCACCatgcagtaaaataaa----aagtagattaaatatctaaatattaaaacagaaatctgTAGTCCATTAGGAGATGAACTAGGTAAAA--CTCAAAGATACAGGACTAAGTAAGGATTTTCTGAGCAGAACCCAAgttacacaagaaataacattaagaatcaataaatgaggtTACATCAAATTC--AAAGCTCTTCACAGTAAGGAaaaccaccagcagagtgaagagtcaatgtacagaatgggaaaaattttatcCAGCTACTCC---CCAGACAGAGAACTATTGTTCACAATATGTAATGAA

a score=24403
s chr3           127774326 2272 + 160039680 AAAAAGAAGACAGCCACAAGA----ACAGAATGCCAACTCTAACAACAAAAATAA--AAGGAAGCAACAA-------TTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCT--CAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACT-TTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAAT-GGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCAT---GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATG-AGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAA-----------GAAGAACTATTC------------------------AAAGAATTAACCAAACGAGG-----------AGTTGGTTCTTTGAGA----------AAATCAACAAGATAGAT------AAACCCTTAG--------------------------------------------------------------------CTAGACTCAC------------------------------------------------TAAAGGGCACA-----------------------GGGACAAAA---------TCCTAATT---------AACAAAATCAGAAATGAAAAGG-----------------------GAGACATAACAACAGATCCTGAAG----------AAATC---------CAAAACACCATCAGATC---------------------------CTTCTACAAAAGG----------------------CTA--------TACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG----AGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA-------AGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCT
s HiC_scaffold_1 115153549 2391 + 233722169 AACAATAAGACAGAGACAAAGTAACAAAGAATGtacaaactaacaacaacaatAGTGATAAAAGTAATAAACTGTCTTTACCTACCAGTAATGACTTTGAATGTAATTGGACTAAGCTCCCTAGTTAAAGGATGTAGACTG-CTGAATATCTAAAGTAACAAGACCAATTAT-ATATTGCCTATAAGAAAATCATTTCACATGTAAGGACACAAGTAGACTGATGGTGAAGAGATGGAAAATCATATTCTGTGAAAATGAGCAAGAG-----GGCAAGAATAGCTATGCTTACATTAGACACGATGGACTTCAAGTCACAAAAtgtaacaaaagacaaaaaaagtcacTATAA---CATAAAGGGCACAATTT--------AAATTATACCAATTCTAAATAT--ACGCAATAAACCTTGGAGCA--TATACTAGATAGAGAAAATACTATTAGATCTacgtggagagagagagagtaattCAATAATAGTAGGAGATTTGA---CTCCAGTTTCAGAAATGGGCATATTATCCAGAtagaaatcaaa--ggaaaatatcagACCTAA-----ACTGCTGTCCAGATCAGGCCTCAGAAACATTTATAGAATGTGTCACCC-AAAAGTATAGGGTACACCTTCTTCTCATCAGCACGTAGAACTTTTTCCATGATAGGTTACATGTTAGTATTTGAAACAAGtctcaacaaataaaaata-attcaaaatgagacattaagtattttttt-taccTCATTGGAATAAAGCTAATATTCA-CAGTATGAGAAGTTTTCGAAACTATGTAAGCACCTGGATATTGAACAACATATTATTGAACAATGAATGGGTCAAGGAAAGAATTTAAAAGGAGGTTAATAAATCTCTTAAAACAAGTGAAAAGGGAAGCACAACATACCACATCCTATGTGTGACATCACAGGTATTTCTAAGAGAG--GTTTATAGCAATAAATGCCTGCatcaaaaaatttacaaatatctca----aatagTTTACCATTGCACctcaagaaaccagaaaaacaatatCAAACTAAGTCCAGAATTAGTGGAATGAAAGGaataataaatatcagagcagaaatgagtGAAAAAGTGACAAAGATATGTAaggaagagtttttttttaaaggcttttagATAGATTAAAAAGCAAGATTCAAATAAAGTCAGAGGTCATAATGGAGACTTTTAAATTTATGTCACAGATTAACAATAGAGATAGCAAGAGACCCTTAGAAATAACCATATGCTAATGTATTTgtcagttttctgttactgtaatgaACACTTAATATAAAGTTTGTTTGGACTCACATTTTAGAGTGTTTGATCCATCCGGATCTGTTGTTTGTAGGCCTCTGGTAGGGAGCAGGAAATCATGGCAGAAAGACATggtggagcaaaactgcttaCCTCCCcatcagaaactgaaaaaaagtgaaaaaagaaagggctggggtctCCTTAGTCCCTTCAAGGGCATGGCCCCAATGACTGAAGTCTTCCCTGTAATTCTTCGCTTCTCAAGTTACCACCATGTCTCAATACTACCATTCCAAGGATCAAGACTTTAACACAAgggcctttggggaacatttcagatctaaactgTAGTACTCAA-GAAACTGGAAaacccagaagaaatggataaattcatgAATACAAAAAACCTCCCTaaattaaatcataaataaa-----aagttaaacag----atGATA---AATGagattgaaaaaataatgaaagttctCTTG-------------------TAGAGTAGCTCATTGCTGTATTCTGCCAAACATTTAAGGAAGAACCAGTATCAATTCTTCTGAAATTactacaaaaaaatcacagaggaGGAAATTGTTCCAA---AGTTGATCACACCATCA--------------AAAC--CAGACAGAT---GCAAGGATAGTTCCAAACATTCAGATCAATT------------------------------AATGAGATAC----------------------CATTA--------------------CGATTAGAgttaa----aggga-----------------aaatgaaaaaaaaactatgataTC--TCATATTAACAAAATCAAGGATAAAAACCTTATGGTCTTTTCCATAGATacataaaaagcatttgataaaattcaat-ccTCTTCATGATAAAACAAGTCAATTGTAGAA-------------------TATACCTAAACACGGTAAATACCATATGTGACAAACTCACAGTGGACATCATATAGAACGGGAAAATTCTGAAGGTATTCCTGT--AAGTCTAGAACAAGGAGAGGTTGCccacttttactatttttatttggcATAGTAC---------TAGC---AACAATTAggtaagagaaagaagtaaagtaCTTCCATATTAGAAAGGAGAAAGTAAAACTGTCCTCATTTGCAGGTATCACAATCTTATATAGAA---AACCTGAAAACTTCAATAAAAAA-TGCTAA--CAAATACACAAATGCAATGAAGTTGCAAGATATAAAATCAGCATACGAAAACTGGTAGTGTTTCT

a score=68669
s chr3           127774327 3712 + 160039680 AAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTG----CTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAG-------TGAAAGGCTG-GAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAG-GGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATT-GACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTAT----CAGACCACCATGGCC----TAAGACTGATCTT-----CAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCA-AGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCT-ATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA----AGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAAT--------AGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACT-CTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAG-CATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAG--ATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAA-TGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCC-AGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGA-TAAACAGCTTCGGTGAAGTAGCTGGATATAAAATA-----AACTCAAACAAGTCAATGGCCTTTCTCTATA---CAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaa--gaaattaaggaagatctcagaagatgggaagatct---cccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatct---acagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctagga-tagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcaca-taaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaa--aagaccaccaacagattgggaaaggatct---ttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaa--gaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactg-aacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaa-ggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtgg------agaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatg
s HiC_scaffold_1  76829602 3540 + 233722169 aagaggagtcaGCAATAGGAGAGCAATgc-------aatgacaagaataag---------tcaatggTTTTCaataataactctcaatgtgaacAGTCTCAACCCCTGAATCAAAAGACA--AATTGACAGACTGCTCAGA-AAACGATTCCTAACAGTAAGTACACTGTATATAAGAAACCAAtgtaatcaaaaaagaaattcatagactaaaaaaaaaaaatcaaagactacAAAAACAACATTCCATACAATAGGAACtcaaaaaca-----------cttttttaa------acaaaatggaCTTTAAggcaaaactgatcagaagaggcaaaaaaaGGTCATTATATATTGGTTGAGAGAATAGTTCAACAGGAAGAAGTaataattagaaatatatatgcactgaacACTGGTACACTCAC-TTCTTAAGACAAACACTACTAAA-cataaaatatcagataaataTCAACGCAATAATACCAGGGGACCTCAATAtctcactatcacaaatagaccAACTG----GACAGacaatcaacaaagaaatgtcaaaattgaactatattttcaaacaaatggacttaatagataccTTCAAAATGTTCTATCT---agtaacagaatacacattcgtCTTAACAGCACatggaatttttttcaaaataagactACTTACTGCTCCACAAAGTATGCTtcgcaaaataaaagaata--gaaattatcccatgcatataataaatcagacacacaagatcATAATATGATTAAACTAGAAAACAATGGGAAAATAAACCATAGGAA-TTATGAAATACATGAAGATTAAAGAACATACTTCTCAATAATCAAAGGGTCacaagaagaaatcaaggaagaaattagacattCCCTGCAATC-AACAACACTAG---TACAACATACCAGGACTTTATGGGACACTATGAAAGCAATctcaaaagggaaatttatagttgTGAATGcacacatcagaaaaatagaatgagaCCAAATAAATTA----CCTAATGATGCATGTCAA-GTCTTAGaaaaaca--atccaaat----ccaaagcaagtacaaagaaggaaattttaaagatcagagcagaaattcataAAACTGATAcgaaaagtaaaatacaaagaaacaa-------------tgactc-------aaactaataaaata----aactgtCAATCCTACTTAAAAAA------AAGGTCAATACC------AATGCAATTACAAATGAGAA---AGACACCACCAAAATTTGTAAGATTATTAGCAACTATTTCTCAAACTTCAACAAA-GAATCTACTTCAGTGAAGTAGATAACCCATAATAGAT---------TCCTAATACAAATGAATCACCTAAgt-gaatgaagaagatataaaaattctgagtaaCTCATTAACAGACAATGTAGGTGAGAcagtaattaaggaaaaaaaaaactatcaaggaggaaaagcccaggacctgataAATTCATCACTGAGTTCTACAAGAACCTCAAGGATGATCT----------CCTCAAAGACCATT-AACAATGTGAAA--AGAAGGGAGTATTGCCAAACTCACTCC-TGAAGCTAGCATTATCtttattccaaaaccagacaaggactcAACTAAAAAcaagaactacaggtcaatcttatgaatgaacagaaatacaaaaatcctcaacaaggt--------ACAGAATGcaacaatttattaaaaagatcatacatcatgatcaagtaaaTTTCATCCAAGGGATGTAAGGATAGTGTaacatatgcaaatgaataaatatactaGATCACATAAATG--------GcccaaaatcacatgatcatctcaacagacacTTAAGAGGGCCTTTCCCAAAATCTAATATCTAGTCA------AGGTTTTAAAAAGCCGCTAAGAAAACAg----cttatcttaatctgataaaagccttttacaACATACCtcctgccaacatcatattaaaataggaaaaaactggAAG-ATCTTCTCTAAAATCAGGGAAAAGACAAAAGTGTCCTTCATCAtcactcttgttcaatatagttctcaaaaAATTAGTTGACAGCAAccagccaagagaaagaaa---aaagtatatgtaCAGGGAAGAATGAAGTCAAATTATCCTTACTTGCAGATAACGTGATCCTTTAAACAGAAGACCAAGAAAATTCCACAAAAG-ACTCCTGAAACTAATTAAACGAATTCAGCACAGTAGCGGGTTAAAAAATGAACACAACTCAGAAAAATCAA---CATTGTTCCAGATATCAAttaaaaaactcactgaaaaacaaattaagagaACAATACAAttcaaaagaactttaa--aaagttaaatacctAGCAATTAACCTAATGAAAGTCATGGAAGACTTCCATAATGAAAACTGTAATACTGTGAATAAAGGGAGATTTAacaggacattagaaaatgaaatgatatctaCCCGGCCACCTGGATAGACAGTATCAATCTTGCTAAAATGGCCATACCTTCAAAACCGACATAacacagatttaatg-----ccaatcaaaatgtcaacaaaattcctcacagaactagaaaaaccaaccctaaaatttatatggagccAAAAGTTACACAAgactagcaaaagcaatcctgggcaataagAACAAAGCAATAGGCATCACATTCCTGGATATCaagttgtattacaaagctacagtgacagAAATAGGATGATAC------ACAGAAATACACTCCAGTCAATGGAATAGAAGAGAATATATAGAAACAATTCCAGTCAGATtcagccacctgatctttgataaaggggccaaaaaca--catTG-----AAGGtaatctctttaacaaatggtgccaGGAAAATTAA--GCTATC---CACATGAATCTTAA---AGCCTTATCTCTCAgcacatactaaactaaaatcaaaatggatcaaaattctaaacagtaaaac---aaacatttaacctactggaagataaa-caggtaaaattcttgaagacatagg-----------attttctaaacagaaccctaATTATATAAGAAGTCACATCAAGAATC-------------------ATATCAAAAAGTTGTGTACAACAAAAGAGGTAACCAACAGAGCTAACTAAGACAAcatacagaatggggaaaattttTTGTTAGCTGCTCT---TTGGACAGAAGactaatacataaaatacataaaaagctaaaacaaatTTAGACTCCCTCAAATAAAA-GATCTAATCAGAACACAG-----ACAACTGAAATAGATACTACTCAAAAGATGATGTACAAGCAGCCAGTAAATACCTG-AAAAGTCTTCAACATGTCTGACCATTACAGAAATGTAAAGGAAACCAACACTGAAactccatcttattccagaaagaaatggatatcatcaagaaatcaaacagtaggaaatgctggtgaggctggggGTGGCTATAGGGAAGAACCCCTCTACATAGCTAGTGGAAACCTAGAGTAATACaactgctatggaaatcagtagagggatttgtca-aaaactaaaacaagaaattccatttgactcagctcttCTCTCTCTAGGTATcctcctaaaagagttaaagacatattaCAATGATAAATACATATCCATATTTGTAGCAGTACAATTCAT-TTAACTA------------AATCTTGAAGT-------CAgatgcatggataaagaaaatg

a score=5915
s chr3           127774391 266 + 160039680 TACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATG--GACTGAAGAAACAGGCTGGAGTAGCCATTT-TAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGG
s HiC_scaffold_1 185583347 247 + 233722169 TACGTGTCTAAAACAACTTTGAAGGTAAACATACTAAATGTCTCAATTAAAAGATACAGTCCTGCTGAATAGATACAAAAACAAGACTCAACAATATGCTGCCTTTAAGAAACTCACTTCACCAGTAAA--------------TAAAGTGAAAGACTGGAAAAAGATAGTACATGAAAATGAAGACCAAAGA-----GCAGGAGTATCTATTTCTTGTGTGAGGCAATATAGACTTAAGAT---GAActgtaaaaatagacaaaaaaag

a score=33293
s chr3           127774393 2497 + 160039680 CTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTG----GAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACA-AGGAGGGACACTTCATACTCATCAAAGGTA-AAATCCTCCAAGAGGAACTCT--CAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGT--------------------GGAAACAGA----------------------------AACTAAA--------------------CAGGGACACAGTGAAACT---------------------------------------------------------AACAGAAGTTATGAAAC--------------------------------------------AAATGGACCT-GACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC--CACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTA---GCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaa---gtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaa
s HiC_scaffold_1  42973449 2212 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGT-----TTATTAAATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatggaattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagacaGAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaaca------aaaccaaactaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacat----------------------------------------gcctgtaatc-acagcactgg----------------ggagaatcatc-----------------acaagtttga--------------ggtcatct---------------------------------------------------------------------------tgGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAGAC--TTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTA--------AAAATACTCcag---gaatcaacctaatgaacaggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAA

a score=80468
s chr3           127774407 3775 + 160039680 CTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAA--AATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTA-----AAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAAC-TAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCAC--------------CTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATC---TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAAT---AGTCA-CAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacaga-ttcaatgcaatccccatcaaaattccaactcaattcttcaacgaatt-ggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaa--agtcttct-caaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaac-----ccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatc--gatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattg-ggaaaggatct--ttacctatcctaaatcagataggggactaatatccaacatatataaagaactc-aagaaggtggacttcagaaa----------atcaaataacc--ccattaaaa--aatggg----gctcagaa----------ctgaacaaagaattctcacct------------------------------gaggaataccg--------------------------------------------------------------------------------------aatggcagagaagcacttg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgcc---ccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtattcact
s HiC_scaffold_1  75496062 3766 + 233722169 ctctcaatgtgaatggtccTAATTCCCCaatgaaaagacacagattggcagagtagatcaagaaacaaaactcaaCAATGTGCTATATTCAAGAAGCACAATCcaaaaagaaatgtacagatta----AAGCTAAAAGGATGAAGAACAGtgttccatgtaacaggaacccagaaaaaggtaGAAGTAGCTGTCTGAATTTTAGACAAAATGGACTTCAAGACAAAACTGATCCAAAGAAGCACAGAA-----------AATCATTATAAGGAagcaattcaacaggaagagctAACAGT-ATAGATATACATGCATTGAACACTGACTTGTCCAACTTTATTAAACATACTAtgggacataaaagatcaga---taaacagcG----ACACAATTATAGTGGGAGACCTCAATA-----------------gtcagatcaattagacaaaaaaatcaacaatgagatATCAAAGATGAACCAAATCttcaaacaaatgaatttaaCAGTTATctacagagtgctccatcc---aacaGCAGGATACATGTTCTCAAAATCATGTGAGATGGAAAGTCACatgagactttctccaaaattGACCACATC-CTGGCTTTAAATCATGCCtaagtatatggaaaaataatctaaattttaCCATTCATATTACCaaatcacagtgcaatgaaagtAGAAGTcaagagcaaaagaaaccacagaaa------------------attaaACCATATCCTCTTGAATAATTGAtggttcacagaagaaat---taaaaatattagaaagtttttagaaataaacaataataccaTTACAGCATACCAGAACATATGTGTCACAACGAAAGCAGTCCT--GAAGTAAGTGGATAGCtctgaatgcccacatcagaaaaacagagcaagttcaAATACATAACCTAGTGTTACACTCCAAGGTCACAGAAAAACA--ACATCAATCCAAATCCAAAGTTAGTAcaaggaataaaattataaatatcagaacagaaatcagtgacattgaaactttgaaaatta--caaacaatcaacaaatcaaagagctggttctttgaaaaaataaaca-----gacaaattcCTACTCAATCATatcaaaataaagagagaaaagatcCAAACCAATCCAGTCAGatacaaaaaaaggcaaaatcacagcagacattgctgaaatccagaagataatTAGCAATTATTTTGAGGatctgtattttaataaattggAGAACTCAGAAGAAGT------ATGTCCCTTACATGCATGTGAATGACCAAAACTGGaccaaga-aaatttaaataccCTAA-AATCCAATAACggacaatgaaattgaagaaatgaaaaa----ctaccaactaagaaaactTCAAGTCCCAGTGAGTTGactgctgaattctgtaagaacttTGGGGAGGATCTAATGCCAAAATTCTTTAAATCCTTcagtgaaatttaaagggaagggATACTCCCAAAGTGACTCCTAGAAGACATCATTATCCTTTTTCTAAAACCAAGAAAGGACTCAACTAATAAAGAGAAGCACAGACCAATCTCTTCAAAGAACATCAATACAAAAGTTCTCAATAAGATACAGGCAAACaagatgcatcaaatcatcaaaaacATCATATATCAAGTATAAGTAGGatccatcccaggaatgcagagatggttcaatat--------------atgtaataca--acacaaacagaagcaaggataaaaaacacattatcatctcaattGATGAATAAAAGCTTTTT--CAAAAT-TAACATTCACTCATGACAAAAA-CCTGGAAAAAT--AGTAATAAAGGATCTtatatcaatctgataaaagccatttatgacaaaccc-tGGCCAAC--CATGTTATACAGAGGAAAATTG--------tcctttaaaatcagaaagaagacaaggatgcCTACCATCACCATTCTCATTCAACACAGTTCTTGAAATATTATCCAGAGAAATCTAGcaagagaaacaatgaaaagaGATCTCTATAAGAGA----GAAGTCAAATTAATATTATTT-CAGATGATGTGGTCCTCTACATAGAATCACCAAAGAATTTCACTGAAAACCATATAGCATTAATTACCAAATTCTGTAGAGTAtcagaatacaaagtgaac----aaaattcaa---cattcctatacacaaataataaactcatcaAAAgag-aactaagaaaataataccattcacaatacaattcattaagaaaaattaaacatttaggaATTGACCTAATGAAGAAAGTGGGACACCTGTACAagaaaaactacagtattctcaa-aaggagatcaaagaagacatcataaaatggaaagacaacccttCTTCCTGAATATTCAGGAT--------TCAAAATGATCATTTTTCCAACACTCATACACAGGTTTTaacacaatctcaatcaaaatgccaacagcaCTCCTCattaaaccagaaaaaaatactactaaaattcatttagaagcagaagagactcagaatagcaaaagcaatcctatgCAATGAGAATAAAG---TGGGAGGCATCACATTCctggacttcaagttatactgcaaagccatattgataaaaacagcatggtactgaccaaaaactgaatatttgaatcaatagaacagaataggGGATGCAGAAACAATTATAGGCAACTCACCTAT------CTGATAtctgacaaagaagccaaaagcATACACAGATGGAAACATAATCTCTTTATCAAATGGTGCT-GCTTAGCCACacatt-----------------gaatctagacccatgtctctcatcatgtagtaaactaaaatcaaaacagttcAAAGTTCTAAaggttaaaatagaaataat----ctgctggaagataaaagagGTAAAACCCTTGAACACA--GGTGCAAGCcaggactttctgaatagaaaaaaa-------------taattccaagaatcaacaaataggatcatataaaattaaaaagtttctgcatagaAAATTAagtaaccaacagagtgaaaagataacctttggaatgaggaaaatattctgttaaatatttt---tcagacaaaagactgatatcaagaatacataaagaactctaaACAATTAGATCTCCACAATTGAAGACTGATCAAAAAACAGGCAGCTGAAATGAATGGGCACTGCTCAGAAGAAGCATAATCTGGATACAGGGTGCACATATTTAATCCCAGccctttggagactgaggcaggaggatcactgtgaactTGAGACCAGCCAGGCCACATAGTGAATTCTAAATCTGAATTATATAGGGAAATTacctaaaaatgattttttaaaagtaaaatggccaataaatacatgaaaaaaatgtttaatatccctgattattagagaaatgcaaattaaaacaacactgagattttacttTACCCTAAATAGAATGGATATCATGAAGAAATCAgataatagcaaatgctggtaAAGCCATT----AGGAGGAATATTTCTACATcattgatgggaatgtaaattagtacaaccattatggaatcCAGtacaaaaattcttcaaaaaattaaaactagaaattccgtttgacccaactattttccttctaagtattttcccaaaagagtcaAAGTCATCATAGTACAGTGATACACAGATATCCATGATTATAGCAACA----taataacagctaaatcttggaggcagcctgtatatccatcaacagCTGAATAGAT--aacaaatacagtatttatacacaatgatgTAGTACTGTGTCATAACAAAGAATAAa--caagtcatttgtagaaaaatggatacacctgGAGACTATAAtgctaaacaaaataaaccag--acatacaagtttaaatatcacatgttctct

a score=27049
s chr3           127774415 1820 + 160039680 ATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAAT--TTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCAT---------ACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAG---------------ATACAAAAATATTGAAATTGTCCCAT--GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCT---TGGTCA-----------AGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAAACATGAG------------------------------------ACAGCACATACTAGCAGCTTGACAACACATCTA----------------------AAAGCCCTAGAAAAAAAGGAAGCA----------------------AATTCAC----CCAAGAGGAGTAGACGGCAGGAAATAATC-------------------------------------------------AAACTCAGGGGTGAAA---------TCAACCA-----AGTGGAAA------------------CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGAT----CAAG----TTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAG--TCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGG
s HiC_scaffold_1  89719555 2099 + 233722169 ataAATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTAAAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaaatattgggcataaatattaaaa---atacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTCTCAAG----CAGATCAACTAGCcaaaaattaaccaaaaatatTAT--AGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaaatagacAAAGACTCAGACGTTTGTTAA-----GTATCCAAAACACCTaatgaatcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAGATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAAT--------AAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=73269
s chr3           127774436 3720 + 160039680 ATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGG-ACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTT-ATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACA---CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCT--AAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAA----ACTGAATAACACTCTTC--TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTA-----ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGG--------ATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTA--ATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAA---ACTCAAACAAG---TCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatg---------ggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat------gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataacccca--ttaaaaaatggggctcagaactgaacaaagaattct-cacctgaggaataccgaatggcagagaagcacttg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa--cacattcacaa
s HiC_scaffold_1 110855274 3525 + 233722169 ataCTAAAAACTAGACTGGAAGATTGGAT-CAAAAACAGAACCCAAGAGTCTTCTGCATTAAAGAAAC--ATATAATCAAAAAAGACATTCATAGATTAAAcattaaaggatagaaaacaacttTTCATGTAGCATGGCACTTAA--AACAAGCAGGGTTAACAATTTTAATATCAGACATTATAAACT--CAAGCTAAAATTGactagaagagacaaagaaggtccaAACATACTAGTGAAGAGAACAATCCCGCAAGAAGAGTCAACATTGATAAacacatatgcaccaaatgcTAGAACATCTATTTTCATAAAGCAAaaactactgaaattaaaaagtaaaataaacactaGCACAATCATACTAGAGACTTTTAATGTCACACTTGTATGAAGagtcaaataaattaaatataaaacaaacaaataaatgtcaGTTATAC---CACAACTT--TGAACACATGGATTTAATTCATAAATACAGAGTATCAGACCCTGTAAAACAAAA---TATGCATTAGTTTCAGCAACATatggtacattttataaaatagatcacatactagcccacaaaaccttcttaaataaatataaaaagaatttaaattactcCTCTAATGCTATCAGActg---tgaaaagaaaatagaaatcagtgacagaaaaaatttcagaaatgcaaaatttCCTAGAAAGTTAACAAAATACTACTCTTCATCCAat-------tggtcacagaagaaat-----------ttcaaaaattctgaAAGTT-AGTGAAAATGACTGTAAAATTCAATGAAACATCTGGGACActattaaatcaattctaagataaaatattattgtaatCAATGTTTATATTGGAAAAATAGAGCAAGCCAAAGTAAACAACTTTATTAGAAATCTTAAGATACTTGAAAAATAACAatccagt--acaaaacaaaattaa--ggaatgaaatTATAGAgattagagtagaaatcaataaacttgagacaaaaataactgt-aaaaacattaaaaaatcaaagagcttgttctttgaaagaatacatgaaatagataaGCCTTTAGCTAGACTCACCAa--gactaagagaaaaaaaaatacttatattAAGAGAat----------aaaggtgaaatcacaacagttTT----GCAATCCAAAAGAtcgtaactactttg---aaaaatttataatccaaaaaaataccaaattttgAAGAA------------CTGGTCACATATAAACTTCCAAAACTAAAAAAGATGTCATAAATTTGATTGATAAACTAGAAA---------TAAGTATGGAAATTGACTAAGCAGTAAAAAGTATACCAACTAAATATAGCCCAGGACTTGATTGATTTATGACTGAATTCTA-CAGTTTTTTAGA----ATGTTACATCAATACTCTTcaagat-tttcaaagaaaataaaggaattggAGTACATCTAAATGCAATTGTGGAA--------ACCCTGCTACCAAAACTGGATAAAAACCCAACTAGGAATGGAAACTGTAGGACTGTCTTCTTACTGAACACAGATGAACAAATCTGCAATAAGATATTAGCAAATTAAA---ATGAGCACATTATCAAAAAGATGATACATTATGATCAAGTAGGTTTTATTCCAgagatgcaagaatggttcaataTATATATAAGTGCACAAATGCAATATATAACATAAG-AAGGAGAAAGGTCAGGACCATATAATCATATCA--AGATACAGAGAAATCTTTAAACAATACTCAATGTCTCTTCATAAACAAAACCCTGAAGTAAATTGGTATAGAAAAACCATACCTGAGTGTGATAGA--CTATTTATAAAAAACCAATAGACAGTATTGTACTAAATaagaaaaagctgaaaacatTCCTCTTAAGTTCaggaagaaataaatgatatTCACTATCAAT---TCTTGTTAACAACTTActtgaaatattatttgaaacaacgaagcaaaacaaagaaat-aaagggatacatataggaaaagaGGAACTCAAACTATGATTATTTGtagatattaaaatattgtgCAGACAATACCCAAAGAAATCCA-CAAAATACTATTTGAATTAAGACA-AACTTTAGCAAAGTAGCAGGATTTaagataaaacacaaaaacaaagattCGTTAGCATTTGTGTATACC---AACGagtgggaagagaataaaattatgacAAAAATACCATTCAtagtagcttcaagaaaaatgaaatatctcaGAATTAACCCAATAAAAGGGATGAAAGA-CTTTACAAAGAAACCCATAGTACTGTGAAGGAGGCTCTTGAAatggacatcagaaaatgaaaaaaaaaaaaaaatcccct---cttCTGGATAGATAGAACCAgtattgtcaaaatgaccataattctAAAACTGTTATATGCATTCAATATactcctaatcaaaataccaacagaatAATTT-acagatctaaaaaaaaaacactaaaattcatatagagcTATAAGAGActgagaataacaaaagcaattttgggTAGTAAGAAAAAGGCAGAAGGCATAGTAATATCTGACTTTAAAC--TACTTCA-AGTaa-ggtgataaaaacagcatgacattaaaacaaaaacagatatatGTCTCAATGAAACAGAGGTGAGGATACAGAAACCTTTCCAAACATATTCAACTACTTGATCTTTAAAAAAGTGGCCATAAACACAAGTTGGAACTAAGACAGTTTTCTCAACAAGTGGTGTTAGTGTAACTGGTTATTGGTTTGCAGAGGATTGAAAATGGACCTTTGTCTCTCAccatacattaaattaaaatctaaatgcatcaaagttctaaacattaaaacagaaaagttaaacctactagaagataaaataggcaaatCACATGAAGACATACATGAAGGTGTAGGAAAGGATTTTACAAACAGAATATCAACTGTACAAGAAAGAGCAGCAAGAATTAACAATTGAGATTACATCATGTTAAAAAGCTTTGGTATAGTAGAAGA----GTcagtagagtgaagagaaaacctataAAGTGGGAAAAA---TTTACCAATTATTCCTCAgagagaggactaatatctaggatATGCaac-aactcaaaaatat-------------ttaaaccaCCTAAAGTTAAGAAATGGGcccccaaaatgaagaaaatattttacagaggaagaaatacaaatggtaatcaaatatatgaaaaaaattttcaacatctctggccattagagaaaagcaaattaaggCAACAATAATATTCTATCTTTCTCCA------------AACattaagaaataaagcaatatcaaATGTTGGTGAAGct----------------------------ctggtgggaatgcaaactgaaacaatcattgtggaaatccgtatagagatttctcaaagaaattaaattagaaat------------------------------------------------------------------tatatgtatcaatattttaatggcaaa---atttgtaatagctaaatcctgggagcagcctgcatacagATTAACAG-gtagtggataaagaaaacatggtatctATATATAACAGAACACTACTTAGCAATAAAAGTGAGAGACCTGAGACATTT--GAGGAGAAAGAATGTACCTGCAAAATACAgtgctgagtgaaataaaccagactcacaa

a score=41410
s chr3           127774527 2296 + 160039680 ACTACCTCAGAGT----GAAAGGCTGGAA-------AACAATTTTCCAAGCAAATGGACTGAAGAAACAGGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAG------CATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGA-CAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTAC-----------------AGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTC---TGAGTGCCTCCAA---GAAGAAACATGAGACAG----CACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG-------CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG---ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCT-CCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAA-TCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGG----AAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT--ATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGAT--ATAAAATAAACTCAAACAAGTCAATGGCCT-------------TTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGT---------------CACAAATaatata-aaatatcttggcgtgactctaactaagga----------------agtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatct-cagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
s HiC_scaffold_1 144250034 2281 + 233722169 atttcttcagggtttttgaaaaatttgaattCTCACAACAATATTTCATGTACCAAGACCCTGAAAGCTAGCTAGTTTAGCAATTTTATTCTCAGACAAAATAAACTTCAAGCTGAAACTGATCAAAAAagtcaaagaaggtcactacata-------------aaaGTTTACAGAACAATCCAATACTTGAAAATGTATACGCACTAAATCCCGAGGCACTTGacatcataaaacaaatactaccgaacataaaagatcagatataCATCA------ACAAAATCACAGTGGATGACCTCGATACCCCACTTGCACAATGAGATCAACTcaaccaaaaatcaacaaaaaaaggTCACAG--------------------GAACAAACAGACTTAATAGATATCAATTGTAGTAGTACTGTAATAGAGTGTTCTACTCTACTGCAGCAGAACATGCACTCTTCTCAGCAC---acaggactttctccaaaatagaccacagaGGTAATT------------TATATAAGTGTAAAAGACTTTAAATCATTCCATCTATACTATCAGATCTTTAAGcattgaaactaaaaacaaatcgTCAAAGAGACcatgagaagtttagaaactCCTGGAAATTTAACAACACATCCTTGAATAcccaatgagtcacagaagaaatcaaggaaaacaaTGGACAATTCT-AGAATCAAAGCACAATGCCAGTAAAACACATCAGAACAAGTTA---ACAAAGAAAGTggtcctaaaagaaaaac--atatttcagTTAACTACATCTAATGTGTAGTCACATTAaacagtgagctcaaataaacaactttgtGATGACCCTCAAGATATTCAAAAAACAACAATTTAAGctcaaatttaatttaaagagagaaatcacaagga-----------cagaatagaaattaatgtaacgaagaccaaaaaaatta--caaagaatcaatgaatca--gagccggttctttgaaaagatatatATAAAAGACCCAGCCTTAGTTAAAcctaccaaagaa-agaaagaaaggacttaTATCAAtgcagttagaaatgaaaaaaaggtgTAAATTAAAAGAGACACAATCAAAATCCGAAGA-----TAGTAACTGCTATGAAAAGTTATACTCCAATGAGTATACAAATCCTGAAGAAACAGACAAGTTCCT------ATAATCATTACCAAAATTAaaccaagaaaacataaaaatttcaaacCATCAAATAACAAGCAATAAAATTGATGCTG-----AAAAATATGCCCTACTAAGAAAAACTTAGTATCTGATAAATCCACCATTGAAATCTACAAGAACTTTCAGGAGATTATAACACACATCCTTCtcaaaatcttcagtgaaattgaaagagaagtaatGTTTCCAAACTCATTTCTGTGCATGAGCGTGACTCTtat-tcaaaaccagacaaggatccaaGGAAAATGA-------CTGACCAATTTCCTTAATGAGTACAGATTCAAAAAGTCCTGAATGAAATATTGGTAAATAGAATGTAACAAATCATGAAACAGATCGTACATCGTGACTGAGTAGGTTTCATCCAGAGATTGTAGGAATGCTTTAGCACCCATAACTCAAAAAACATAGTATGTCACATAAAAAG---TATGAACAAAA--------GTCATATCAATAGACTCATAAAATACTTTTGACAAAACCCAAGACccattcataaaaaaaaaaaaaaaactaaaaaataggcATAGAAAGATTTTACTGCAATTCTTTAAAAACCAGTCATTAAAAAC---TGGCCAACATTGTATTAAACtggaaaaaacagaaagtgtcccctccaaaaccagaga-gagacaaggatgcccactatcaccccTCCTGTTCAAAA-AGCACTCAAATCATTAGccagagaaat------agagaaaaagatataaaggatgtgcataggaaaggaaaaagtcaaattattattgCTTTCGGATAACATGATACTTTCCATATAAGATACCTGAAAAACTCCATGAGAAGACTTCTAGAATCAATAAACAAACGTAGCAAGGTAGcaggataaaaaaaatcaacacagaaacATCAATAGTTTGATGGTGCAAACATCTTTTGCACCagtaatgaactcactgagaaagaaattaggaaaacaataccatttacaGTAGCAtcagtgaaaaaatatatatgtaatatatacatatgtagatGCGTCcatatttaggaaataaaataatgaggATAGTAAAAGAATTCTACAAC-AAAACTGTAGTACTTT---GGAAAAAATTGAACAGGACatccaaaatgtgaaaaaatatccCTTGTTCCTATGTAGGCAGAACCAATACTGTCAAAGTGATCAT

a score=30496
s chr3           127774619 2390 + 160039680 GACTTCCAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCT----------CAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACAC----CACTTTCTTCAAAGGACAGATCGTGGAAACAGA--AACTAAACAGGGACACAG-----TGAAACTAA-------CAGAAG-----------------------------------------------------------TTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAA-AATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGA-----ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAA-ATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCC-ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAG--AGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA-ATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaag-----atgggaagatctcccat-gctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttacta
s HiC_scaffold_1  23001335 2268 + 233722169 GACTTCAAGCCAAAGCTGGTCAGAAGAG-CAAAGATGGCCACTatatattggttaagggaacaatttgACAAGAAAAGATATTGATTGTAAACA---------CAAATTTATTGA-----ACATTCAC---ACACTATTTCATAAAACAGTGCTAgcaacaaaagataaataaaaatcaatacaattagaGTGGAGGACCACAATACCCagaaca--------aagagacagatcaactaaataaacaaaatatacaagCAAATATCAGGTTTGAACCAATCCTCATCAGGAGATCCCAATGCGTATCTCCTATCTAGTATTACTTTTGGATACCTTACTTTGTTAATacactttgaaaaaaaatggac--AAGAACTATATACAgaatatttcaaacaaaaatgacaaaacat----tcTTCCCAAGAGCACAGACAAATATCTCCAAAATAGAC------------------Acacacttaaataaataaaagtaatat--aatttATCCCATTCATATTATCAGACAAGAAtgcagtgaaactagaaatcaaggGCAAAAGAAACCATAGCCATTAtacaaaaacatggaaatcaaGTAATGCACTCA--AATAATGAGTGGGTCATAGATTAAATAAAGAAAGTAATTACAGAATTTCTAACATCAAATATTAATGCTGATACTGCACACTAGAAGCAATGGGACAAAACGCAAGTGGCGC--AGAGAGAATTTTAAAGtt-tgaatgcccaca-tcagaaaagcaAGATAGGCCAAAATAAC---TCTGTGATGTGCTTCAAAcactgaggaaaaaaacaa--------acccaaaactagtccaaggaaggaaattataaatatcagagcagaaattaatgattttgagattaaaaaattacaattaatCAAAGAGTCAA--AAAt----------tcatttgaagaaa--agaaatatagaaaaagccTTAGTCAATcttataata----aaaaaggaaatacccAAAACAGAGcaattggaaatgaaaaatgtaagatCAAACTGGACACCTCATAAATAGAAATTATTAACAATTACATT---AAACACCTGTGCTCTAATAAATTGGAGAAGTTAGAAAAAATCGATAGAATCCTAAATACATG--AAGTAtgaaaacagagccaaaaaaatataaatattctgagTAATTTGACAAgtggcaatgaaattgaagcaggaataaaaataatctaCCAAC----ACAAGCCCAGAATATGATTAATTCAGTGCTGGTTTCTACAAGATTGTCATGGCAGATCTGACT-----------------------------------------TGCTC--CTCAAATAATTCCTGGAAACTAGCATTTACATGGTTCCAAAACCAgataaaaatctaaacaaaaagcagaa-tagagcccaatctctttaatgaacataaaatcaaaataatgataataatatacTGGCAAACATAATGCACAAAATCATCAAAATGATCATACATCATAATCAAGTAGGCTTTTTCCCAAGGATAAAACGATGGTGCAATGTACTTAAATTTAATAAACATAATGCATCAc----acaaaagcaagaac-aaaatcaGATGATCATAAAATAAGCC-CAGGCAGAGCCTCTGAC-AGATCTAGCA-TCATTCACGATAAAATGCCCAAAGAAAATAGGTGTAGAAGGATTGTGTCTCAAACTGTTAAACGCCACTTATGAAAAACCAACTGccaaaattacattaaatacaaTTACAAGACAAAATCTTTTCCACTGTAATCAG-----ATACaagaatgttgtttttatcact-cttatttaatacagtcttgaaaatatt---caaatcatggaagggacaaaaaaa---taaaaggatatgaA-TAGAAAAGTGAAG---AACACATTACTC-------------------TGCATGTAA--GACCCCAAAACATTCCACAaaatgactcctaaaattaataaccaaatttatcAATATAACAGGATgcaaaatcaacacataaaattCAATGAAGttt----------------------gtgaaaaagaaattagtaaaataaaatcatgcatGATAG-CACTAAGGACAAATAAATCCTTAG---AAGCTCACTTAAACAAGTGAgagatctatataaggaaaactACAATAATCTgaaaaaaggaatt--tgaaaagCACAGCAGGAATTATAGAAATACTTTCAGTGGCTTA---ATAGCTAGAACTGatgaagtcaaaatgaccatatttccaaaactgctatacataTTTAATGAAGTCCTAATTCAAGTAACAACAGTATTCt--aacaa--tagagaaaaaaattctaaaattcacatggagctttaagaga---aagaaaaccaa-----tccTTGTTAAcaagagcaaggcaggaggcattgcaatctcagattttaaattatatta

a score=9651
s chr3           127774625 588 + 160039680 CAACCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTC----AATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAA
s HiC_scaffold_1  25850428 542 + 233722169 CAAACTAAAGTTAACAATTAGAGAAAAGAAGGATACTACATACTGGGAAAAGGAATAATCTGTCaagaagagattttttaaaagtggaaataTATAAGCAACAAGCATTTGTGCACtccatttcataaaacaaatgctaTTTGA-CATAAAGAGTCAGATAGACTTGAATATAGCATAGTTGGTAACTTCA-TACCCCAGTCTC-------------------------ACAATAATTAGGTGCAT--------TAATCTACACTATACATCAATTGGACTTAATCTACATTCACAGAATGTTGCATTCAATAATAGCAGAATATGGTCTCATTTCAGTAGCCCATAGAACTTTCTCCAGAATAGAACATATTTTAGGTCATAAAGCGAGCCTCAATGAGtacaaaaactttaaataattCTCATGCATCCTGGCGGA----------ATAAagctagaaatcaatagcaaaagaaaccacagaca--ctacacaaacatgaaaattaaataatatatttttgaatgatCAGTGAGTAATTGAAGATATCAAACATATAATTAGG---TCAATAATAAGTAATGAGAATGAA

a score=40607
s chr3           127774628 2565 + 160039680 CCCAAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTC-----------------CAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTT-CTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACC--CAAACCTA-TGGGACAC------AATGAAAGCATTT------CTAAGA-GGGAAACTCATAGC--------------TCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAG----GAAATAATCAAAC---TCAGGG------------GTGAAATCAACCAAGTG----GAAACAA--GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA---------AACCCTTAGCTA------------------------------GACTCACTAAAGGGCACAGGGACAAAATCCTAATTAA-------CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCT---GGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACC--TTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGT---GACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttga-tcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaa-caattggtgctggcacaactgg
s HiC_scaffold_1 185915450 2554 + 233722169 ctcaaagtattTAAAAAGGGGGAAGATGGGGAGTGCA--ACCACCaggggttcaatccctggcactgcaggaaaggaaaaaaaggcataACAATTTCATATCTATATGAGCCCAGTGTTGGGTCATCTAAGTATATAAAGCAAACGTTAAtggacacaaaaagaaaaataggtagCAATGCCATAATTGTATAGGATTTCAATACTCCACTTTCAATAT-GGATAGATTAATCAGAcaggaaatgaatttaaaaatactggCTTCAAAATGCACGTTAGACAAAATGGACCTGATAGATACACATTGAAACCTCTGCccaaaagcaca-gaaaacatGTTCTTATTTAGTGTAT-ATAGATCATTCTCCAGGATAGACCATGTGTTATGCAATGACAAAATTcctcacaaatttttaaa-atcaaactcaTC--AAGTATTACTCTGAACTACAGTGACTTGAAATTAGGAATCATTACTAAGAGGAACTTTGGAAACCCTACGAGTACATGGAAATTAAGCCGGATGCCACTAAACAGTCAACAGGGCaatgaagaaattgaaagggaaatttttaaaattctagagaaaaatgaacatgaaaacacaacataattgcaggcatggtggtgcactcctgtaatcccagcactcgggaggctgaggcaggaggatcattgcaagttcaagaccagcctggg---ctacaaagtgagctcaaggccagcctgaact-gcatagtgagaccctgtctcaaacaggcaaaaataaataaataaaatcaac---agagGGATAGGGGTTAGTTCTGATATTATATAGCATGTTATGGTAACTATATATAGAAGAATCaattatgtatttcaaaacaaCTAGAGAAGAGCTTGAAGATT---CTCAACACagagata----tttgaaaatatgaaaatattagttACCATGATTTGACCATTATGTATTAGAAGCACGTATTCAGTGACAATACTGTGCCCCATAAATAGGTACAATTAGTGCatggcaattaaaaataaataaaatcacaggtAAGAAAAGAGATATAGCT---GATAccatagaaatacaaagaatcatgAAA--CTATTATGAACAACTTTacaccaaaaaattgaaaaattttttggCT--------------CCCAGTCATACAC-AGCTACCAAAAATTAATCAACAAGAAGCAGAAAATTCGATTATACCCATAGAGAGTAACAAGATTGG-GCAATC-TTAA-AGTCACCCA-CCAAA---------GGACTA-ATGGCTTCACTGTTGAATTCtcccaaacatttaaagaagaacCAGTATAAATTCTTCTCAGACTGTTCCTGAAAATCttagagaaaattatttca---aactcATTCCACAAGGCCAGTATTACTC-AATACCATAAACAAACAATGacaccataaaaa-agaaaactatacatCAATCTCCCTGAAGAACATAATTACAAAAATCCCCAACAAAATCCTAGCACACTGAATTAAGCAACACATTTGAAACATCACTCGCTGTAAACAAGTGGGGTTCATCCCCGGGATCccagaatggttcaacatatggaaatcaatcAACACGATTCATCACACTAAC-AACTGAAAGAC--AAACCCTATGATCATGTAA-TAGCTGCAGAAAAAGGATTTGATAAATGTTAACATGTTTTCATGATTAAGACTCTCAAAAATT--GgcataaaatgtacattttccaACACAGCAAAGGCTATCCATGACAAACCCACAGCTGACATCATACTGAATGCAAAAACGTTGACAAATTTTCCTCTAAGATCTAGACCGAGA-GTGAGTGCCCACTTT-----TACTAATATTCAGCACAATACTACAAGTCTTGGCCAGAGCAATTAagcaatagaaataaataaaagccatatGAATTAGAAAGAAGGAAGTCAAATTGT--TTCTTTGCAGATGACTTGGT----CTTAGAAGTTCAAACCTTAAAGCCTCCACCAAAAAACTGTTGATTC-AATGAACAAACGCAGTAAAGTTTcaggatacaa-------------aaatcagtagcattcctatacactaatagaGAACTCCCTGAAacagaaattaagaaagcaaTTTCATTTATAAGAGCTACCA--AAAATTAGATATCTAGGAATGCATTTACT--AGGAGGTAAAAGATTTCTATACT-AAATctataaaacattgatgaaagaaattgaagaaga-cacaaa------taagATATCCCATATTCATGGGTTAGAAGAATCCATGGTATTAAAATACCCATAATACCCAGAGCAATCTACAGAATCAATTAAATCTCTATCAAAATATCAATGtctttcttcacaaaaataga--gaaaaatcctAAGACTCATATAGAACAGAGAAGACCCTGACTAACCAAAGAG----------------------------AGAATCAC--TCcctgattttaaaacatactaCAGAAGTCTAGTAACCAAAACAGCACAGTGCTAGTGTAAAGACAGACA--CAGgtcaacagaacaaaatagagggCTCAGAAATAAATCTGTGGATCTACAGACAACTGACTTTTTGACAAAGTA-CCAACAGCAAATACGGGGAAAAGAACAGTCTTATTAATTAAATAGTGTGGGGAAAGTTGG

a score=22433
s chr3           127774631 1577 + 160039680 AAAGTTATCAAAGAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACC--TTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCC----TCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCC--CAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-GAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGG--TTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATT
s HiC_scaffold_1 213142432 1321 + 233722169 AATGTGAGCAGAAGAGCCCAAGAAGGTGACTACATTTTTGT-GAGGGAACAATTTCacaagaagagataataattataaaaacatgCGTACCAAACAACAGCACACCTGACATCATAAAACTAATACTACTGGA---CAAAA---------------ACATGATTAGAATAAG-GATCTCAGcagcccactgtcac--aaatacagATGAACTATACTAAAA-TCAACAAGTAAATATCACAGTTTACCGAAACCTTTGAAGAACTGGACTTGA----tatttatagagtgttccaccc---aacaacagaacatacattctttttagcagcacatggaacatgtTACAAAATAAACCACACGCTtaccaaaacaaaatgtttacttaaataaatgagaattgAAATTATAATGTGCATATCATTAAATCATAgggcaatgaaactagaaattaatggcaaaagaaaacatagaaattatgcaaatacgTGGATATTAAACAGTATACTCTTGAATAAAATTAATGGGTTACACagtgaataaaggaaaaaaattaa---ttcctAGAACTAAACATTAATGctaatacaacataccagaagtTATAGAACACAGTGACAGCATTCCTAAGAGGGAAGGTTACAGCTGTGAATGCCCATGTCAAAAATACagaatgagtcaaaataaa---------tagcAATGCACCTTAAActcctaaggaaaa------------------------------------aaataat------------------------agtg-----------------tCAAAGA------CAAATG----------------------------ATACTGACATACCCT--------------------------AACAAAACAATAATGTAC-----------------------------------------------------CACCTT----TTTTCCtagaaaaga----aatc--taaaattgtAGTA--TAAATAGTAAGGAAAAAT------------------TCCTAAAACTGAAGCAAAAAGTTATAAGCTACCTAAATAATCCAGTAACAGGCAataaaattgaagcagtaataaaaaatcCCTAACAATTAAGAAAACCCCA-GATCCGATGGATTTATTGTTGAATTCTAAAAGACCCTTAGGCAAAGATCTGACACCAATACTCCTCAGGTTCTTTAGTGAACTGGAAAGTGGAGAAATACTCCCAAAGGCATTCCTGGAAACTAGTATTACcctaattccaaaaccagacaatgcTCCAATcacaaaaaagaactataggacaatctctttaatgaatatagatgcaaaaatcttcaacaaggcactggcaaacagaatgcaggaaatcaaCAAAAAGATCACACATTGTGATCAACTAGTCTTTATACCAAGGATATAAGAATGGCActgcatgaaaaaaaaacaataaatgtaacacatcacataaacagaat----gCCTAAGATCACATAATCATTTAAATAGAGACAGAAAATTCCTTTCACAAAATCTAATATTCATT

a score=9875
s chr3           127774788 554 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGAT-----------------------------------------------CGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTA---------TGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAA-TTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCC
s HiC_scaffold_1 162323312 578 + 233722169 acacaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGATGAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaa-tatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAA----GCCATACAGCTTAGTTAT-------------atcaatacaaaaa-attaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaa-aatcaaaggcaagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacag-aagaaatcaaatacttCATATAGTTAAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatt-taagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGGTC

a score=10343
s chr3           127774792 690 + 160039680 AATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACA---------AATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTC-TCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTG--CCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCA--AGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1  96150032 642 + 233722169 aatcatagtgGGGGACTTTATTATTCCACTTT-----------------TACAATTAGGAACCAAA----GATAAAGCAAGA--AATATCAGCGTTGAAACATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATAT-CTTAGGCTTTAAgcatacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTACATAAACAATA----GATCACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGT--------------TTACATCTGTAAATGaacatacagaaagaatagaGGGATCCCAAAT------AACTTAAGGATGACTCATGAACTCCTAGAAAGTTACAAA--AAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCA-AACAATATGAGGgactaatgaatcaaagagtgga--CTCTGAAAAAGT

a score=13552
s chr3           127774793 773 + 160039680 ATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAA-CTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTT---CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGC-CACAACGTACCCAAACCTAT--GGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG
s HiC_scaffold_1 154982364 721 + 233722169 ATCATAGTTGAAGAACTTAGTAC-CTACTTTCACAACGAgtcagatcaactaaacaaaaaattcagtaaaaatatATTAGAACTGAATGTACTTTTGAA-CAGATAGACTTAATAGACAACTATAGAATGTTACACTGTAccacaacagaatacatattcttctcagcaagACACAGAGCTTTCTCCATTATAGACCACATA-CTGGTCACAAAGCATGCCTAACAAACTACAAAAGTATTGACATCATCCAATGTTTACTATCAGAACATTGTGCATTGAAAGTAGGCATTAATCACAGAAAAAACTGTAATTTATAAATA-CCACTTGAAAAC--AATAACAATCTGGAACACAAAG------TGGT----GcataaaaaatcaaaggaaatgaaTAATTTCTGGAATCAAAT-AATATGAACTGTACAACACACCAGAACTTACCAGAGATACAAAGAAAGCAGTCTGAACATGGAAACATACAGCAATCAGTGTTCATACTACAAAACTagaatgagcccaaataaataatcaaatgatGAATATCAAGATActcaaaaatgaacaataaaatgaatttaaga-----------------------------atgGAAGAAATTAATGGAATCGAGActaagaaacaatat---aaaaatcagtgaatcaaagaa------cttttgaaaaataaataaaatatatggccACTCAGACAaacttaccaaaag----aaagaatgaatcgt-atcaatgcaattagaattGAAAAAGG

a score=35518
s chr3           127774856 1866 + 160039680 AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCA-----CCATGGCCTAAGACTGATCT----------TCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTT---CTCAAT--GATACCTTGGTCAAGGAAGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCA-CATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGA-GTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA--AAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG--ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT------CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAA--TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACAT-----TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1  38614221 1820 + 233722169 aaaagaaaaataaatgagttgaaacaaatttttgaacaaatgaacttaatagatatAAACAG--TGTTCCACCC---ATCAAGAGT---CACATTCTTTTCCATTGCATATGATAGTTTCTCCAGAATAGATCACA-----GTGAATAAAGCATTcctaagaaaatgcaaaagaatgaaaaatttaccatgcatattatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaaaaataataaatccccAAACCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACCAGAACTCATGG-CCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaataggaaaatccaAA-----CCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaatcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaaggaaaaag---aaaacacaagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAG----TGTGCAAAACAGTGAGAGAACTCAGA----------AAAAACTCAGACA--TACAAATTCCCAGAACTGACCCACAA-AGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTT--CCAAAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGCAGGCAAAGAGAGT-----GACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA----GTCTAGCAAACTCTAACA-AAATTCTTGAAGAAAATT-------GTTTGGAAATT------CTTtagtacaacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGA-AAGATGAACATCTTCACTCTGTTACCA------------------CCACT---------CTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGATGAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACTC-ACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtagaaata-aaaaaataaatacacaaaaaagaaaagcattcctA-ATAACAGTGatgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=10871
s chr3           127774900 582 + 160039680 CCTGACAGATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACC-ATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAA--AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1  96522416 568 + 233722169 CTTGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTT----AAacacaaaaatactgaaataatacAGTGCATATTAATGGGTCATactaaaatgaaatt--------agaaagccacaaaaaagaaactgctcagatCCA--TGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaataca--aatctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=75412
s chr3           127774907 3248 + 160039680 GATATCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAA-TAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAG-----CTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCA---AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAAC----AGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATA-GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTAC-CAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaa--------------------------cttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttac-----ttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggaccta-atgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattggg--aaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaa--aaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcata-tatccagaaga------------tgccccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
s HiC_scaffold_1  52903767 3081 + 233722169 GATATATACGGAGTATTTTACCCTTTTACAACAGAGTATACATCCTTTTCAGGAGTATAtggtactttttccaaaatagatcacatactagtcCACAAACCAggt-taagtaaatataaaagaattaaaattatcctatgcataccATTAGACCATTGtgcaatgaaaacagaaatcaatgacagaagaaaattttaaaaaggcaaaaa-ctcctggaaaattaacaatgtactcctaaacaaccagtggtccacagaagaaatcaaagaagaaagaaa----tttctggAAGTCAATGACAGTGACTGTATAACTCAGTGAAACCTCTGGGACACTACAAAACcaattctaagaggaaaattcTTAGATTTCA------------------ATCACAGAGCACACCCAAGTAAATAACCTTATGGGCAAATTTATGATACTCAAGAGACAAGAAACCAACCCCACAccaaa-------attaaggagaaaaattaaag--agagtGGAAACTGATAAAATtgagactgaaaaaaataaacagtaaaaaatcaagaaattgaagagctggttctttgaaagaatgaataaaatacataagCCATTAGCCAGACTCAC---------CAGGAGGAAGACTTACATTAatga--ttagaaatgaaaaaggtaaaatcacaacagataatttcaaaatccagaagatagtaa----ctactttgaaaatttatGCTCcaacaaattaacaaattttgaagaactggacagatttctagacacataCATACTACTAAAACTAACCCAAGA-------AGTCATAAAAATGCTTATtccaataacaagcaatgaaattgacaCAGTAATAAAAAATCTACCAACTAAGGAAAACCTAGAACTTGataa-ttcactgctgaattctacaaaatcaTTAAGGATGTTACACCACTAATact-ctcaaactcttcaaagaaatttaaagggGATGGAGTGCTCCCAGATTCATTTATGGAAACCAGTGTCCCTGTAATCTCAAAACCAGATAAAGACTAGTTAAA-----AGAAATGTATGCCCATCTCCTTAGTGAATGTAGATGCAAAACTCTTCaacaagatattagcaaatagaat------acaCATTACCAAAAAGACCATACATCATAAC---GTAgttttcatcccagagatgcaggtatggttcaacatacataaatcagtatatgtaatacatcatataaaCAGGAGCCAAGACAAAAACCATGTGATCATATCAGTAGACACTGCAAAGGCTCTCAACAAAAGCCAACACCCCTTTA---------TTTTGAAAA----CGGTATAGGAAGACCATACCTGAATATGAAAAAAGCTAT-TGTGACAAATCAGTAGC------CATACTAAATgtggaaaaactaaaaacattccc-CTAATGtagggaacaagacaaggatgtccactgtttcctcttctgttcaacaaagtacttgaaatattagccagagcaattaggcaagagcaagaaataaaagggCTACATATAGGAAAA---GAACTCAATTTATCATTGCTTGTAAATGATATGGTACTGTACATAGATGATCCAAAGAACTACACAaaaaaaactcttagaattaacAACCAACTTTAGCAGTGtagtaggatacaaaatcaacaca-------cattAGCTTTtgtgtacaccaataatgaacttgATGAGAAgagaattatgaaaacaatatcaTTCATAGTGGCTTCGAGGAAAATGAAACACCTAGGAACTAACCTAACCATGCCAGTGAGggatttttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaactactGTGAAGGAGAGTGAAGATGACATCAGAACATGGG----TGTCTCCTGTTTCTGAGTTGGCAGAACCAAAGAtatcaaaatggtcatact-------------------tccagtGCAGttcaaatcaaaataccaacagcgtACTTAACCAATCTAGAGAAAACAGccataaaattcatatggag-----------ctagaagagaagaaacaatCCTGGACAACAAGAGTGAAGCAGAAGGCACAGCAATACCTGACTTCAAGCTATA-TACAAAGCAGGAGTGAT-AAAATGGCATGGTACCAGAACAAAAACAGATTCATGGATCAACAGAACAGACTTAAGGATACA-AAACCCATCCATACACATTCAACTACAGTATTTGCTCTTTG-CAAAGGAGCCTACAAAATATGTTGGAGGAAAAATATCCTATTCAACAAGTAGTGATGGGAAACTTTATTATT----TGCAGAA-------AATGTACCTTTATGTCTCACCATATACTGAATTAAAAACGAAACtgatcaaagacctaaacattgaaacagaaacattaaatccacaggaagataaaataggaaaaacactT---CACATAGGTttaggaaaggattttctaaac--aacTCTAAT------CACAGAAAAAGCAAGAATGAACAAATAGGATTTATGTCTGATTCAGAAGCTTCTCTATAGCAAAAGA-ATCAATGGTAGAGTGAAGAGGCAACCTACAGAGTGGGGAAAAGTATTGCCACCTgctcc---tcaga----ggactaatatctaaaatatacaaagaactcaaaaaattaatcT----AGGATTTAAAGATCTAGTCATGAAATGCTCCAAAGAAATGGACaca----tcacagaggaagaaatacaaatggccaacaaatatatgaaaaagtgttcaatatATCTGACTGttagtactgttttaatttgtatttgtctaagattccatcttgctctggaaagaatggcaatcatcaaaCAAATCAAACTGA---CAAATCCTGGAGTGGCCATGGTGAAAAAGGG--ACCCcttcactgttgct-ggaatgtaAGTTAGTACAAGCATTATAGAAATCGGTGTGGAGTTTTCTC----AACTGAAATTATAAATCCCATGTGACCCTGCTGTCCCCCTGCTGGGTATCTTCTCCAGAGAACTTAAGGCATCTTACTGCAGTAATT------ggtgcatac----caatgtttatagcagcacaactcttAATGGCTAACTCCAGGAAGCAGCCCATATGCCCACCAACAGAAAACTGGATAAAGAAGCTGTGGTATCTATGCATGATGGAATTCTACTCTGCT-----------------------------------CTGGATGCACCTGGAAAGTATAat-gtgagtgaaataaaccaggcaca

a score=58092
s chr3           127774911 2835 + 160039680 TCTACAGAATATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAA-CTCATAGCTCTGAGTGCCTCCA-AGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC-----------------TAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAG--GATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAG-ATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA---TCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA-CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATG---AATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAG-------------------CAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAAC--CACATGATCATCTCGTTAGA--TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG-----TTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGG---------CTGC--CCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagac-------ctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggctt----------------------------gtgctgtaagatcgag----------------------------------------------------------------------------------------------aattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggg--gct----------------cagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaatt
s HiC_scaffold_1 223975016 2809 + 233722169 TCTACACAACAatt---acaacaacaacagaatacacattcttctcaggaatACACgggattttctccaaaatggaccaTGTG-CTACCTATAacacatgcttaagtaaataaaaaaaaactgaaattattccatgcatattatcaaatcat-ataaaatgaaactaaaaatcaatggcaaaagaaatcccAGAAAGTAggcaagcacatggaaattaaacaataccctccAAAAT--------------------AATCAAGAGATAA------------------------------------------------------------------------TTCCTAAAATCaaaagtttatagctgtgaatattcacataagagaaacaagAGTGAGCTCAAG---------TAATGAAACCCCTcaaattcttaagaaaaaaaaaa---------tcccaaactagtacaaagaagtaaattatataaagcagaacagaaattaattaaattaagaccaaaaaaac-----aaaaaatcaatgaataagaTAGCcagttctttaaaataacaaataaaatagacCAACACTTACCCAATCTAGCCCCCCAAAAAAGacaattagaaagaaaagaaaaagaa----agaaaatgaaattagaaataaaaaaggcaaaatcagaaCAGACAAAACCAATATCCAAAG-ATTACTAGTaacttt---gaaaacctatattctaataaaatggaaaattccaaagaaatgaatagattattgca----tatgaattaccaaaactggaccaacaaaataaaaaaacc--ctgAGTAATCCATTAACAGGCAGTGAAACTGAAgtagtagttta-------------aaaaaaaaaccaagactaCCAAGGATCTACCTCCAAAGTCTACAAGAATTTTAGGAAAGTCCTTCTAAGGTcaatacttctcaaattctttaatgacgttgaaagggaaggaatactccGCAAATCATCCCCAGATGTAAC-ATTACGCTGATTCCTAAAACCAGAAGAGGATCCaagcaagaaagagaactacatgaCAGTATCTCTAACAGCAAACATGGACTAAAAAATCCTCGACAAGATATTGGTAAATAGAATGCCACAAATCATCAAATATATTTGGTCATATATATTTGGTCATATATCAcgaccaaataggattcatcccaggcgtgCAGGGGT----CAACATAC--AAGTCAGTAAAT----------AAATCAACAGAACCAACgacaaaaatatcacatcatcatctcaatagacatgaaaaaaaaacctttgacaaaatccaacattcattcgtgataaaaaaaaaaccctgaagaaaacaggtat---agaaTTTTACCTCAC--TGATAAAGGCCATTTGGGAGTAACCTACTGTCAACGTCACATTAAATGGGAAAAAGCTGAAAGTTTTCCCTCTAAAGTCAGGTACAAGCCAAGGATTATTCACCTGctttcactatcaccactcttgttTAATAGAGTTCTCAAAACATCAATCAGAGCAATcagtcaagagaaagaaataaaagaggggtaa----gaaagaaagaagtcaaattatta---tttgcaggtgaTAGGATCCTCTATAGAAGAAGC---AAAAGTTCCATGCAAAAACTCCTGGAATTAATACACAAACTGGGCAATGcagcaaaatacaaaatcaacactcgaGAATCAGCGGTGTTCCTGTATTCCAGTAATGAACACACTgagaaagaaagtaagagaaCAACTCCATCCACGAgagcaccaagaaaaattaagtgCTTAGGagttaacctaaccaaggaagtgaaagatctg-------------------------------------aagaggacatcagaaaacagaaagatatcccAT--TCCTAGATAGGCAGAGCCAACACTGCCAAAACGGCCACACgtccaaaactgatacacagatataacacaattccaatcaaaagacCAATAGAATTCCTCACAAAACTACAgcaagcaatcctaaaattcatatgcaagcataagagacccagaatagcaaacacaatccacaaaaccaaagcaa------gagGCCTCAGAATCCCAGACTACAAAGCCACAGTTATCCTACAAAACtacagttacaaaaaaaaaaaaaaaaaacagtattggCAAAAACACAGACATACAGATCAACGGAACAGAACAGAAGGTTCA-AAGCCAGCTCCAGCACGTTCAgctacctcatctttgacaaaggtgccaaaaacaTACACTTAAACA---ActgcctctttaacaaatggtgttgagaAAACTAGCTACCCACAAGTATAAGATGGAATCTAGATCCCT--CTCCCACTATGTACgcaactaaaaccaaaatggatcaaaggcctGAACACTGAACCAGAAACAAT----CTGCTGTAAcataaaacaggtaaaattcttgaaga------cataggtgaaGATTTTCTGATcagaaccccagttgcacaatAATAGCAAACCTACTGTTAACAGGagtggtgagagagagagagagagggtgtcCTTGACTTTCCTGAGTTCAGAGGGAAAGCTTTCCGCTCTTCCCCATGTGACCTGACAGCAGGTTTATTATAAAGACCTACCAAATCAACAAATAGGGtcatataaaattaaacagcttctgcacagcaaagcaaACAACCAACATAGTAAAGAGACggcctacagaatgagaaaaaag-tttGCCAGCTACATGtcagataaaggactaatatctaa-atatataaataactcaa-agagTGCccct---aaaattaaa-gacccaatcaaaaaatgggcaactggaaaaaaatgggcaactgaaatgaacataTACTTCTca--ggagaaata-caaataattagtaaatacatgaaaaaaatgttcgaTGTTTCTggctatttgagaaatgcaaattaaaataacactaagattccatcttattccagaaagaatgactatcatcaaaaatt

a score=33126
s chr3           127775013 1744 + 160039680 TCAATAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATG-----GCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAA-TTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAG------------AGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAAT-TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC---CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATA--GTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG--ATCCAACAAAGATAGAGAAC--TTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCAT-CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCA-AACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAG---CCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAAT-TAGGGAAACAACACCCTTCTCAATAGTCAC-----AAATaat--------ataaaatatcttggcgtg--------actctaactaaggaagt----gaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaaga
s HiC_scaffold_1  63894708 1658 + 233722169 TCAACAAATTATAAAAAGCTGAAATCATATCAAGTATCTTTTCTGACCGCAGTGCAATAACACAAGAAAGA-CTTTAAAAACTatacaaata------------------catagaaattaaacaaaatattccAGAATAACCAATagattgaagaagaaattaagaaggaAACTTAAAAAATTCTCAAA--CAAATGAACACGAAAATACAACATACAAAAACTTATAGAATACAGAGATAGTAGACAGAGATAGTAGTACTGCAAGGAAGCTTGTAGCAGTCAATAGCTACAAAAAGAAAGCACAAGCATCTCAGAC----AACTTATCAGCAAACCTCAAGGAACTAGAAAAA---TAAGCCAG---GCTTAAGACTAGTAGAAAGAAAGTAATAATAAAG--------------------ACtagaaaaaatagagac-----aaaaaatcaatgaaacag-----------ttttaaaaaac--ataagattaataACCCCCTAGCCTA--TGAGAaagatggggggggggagaacTCAAATGTAATCAGagttgaaataaaaaaggagataatACAATTGAC---------ACACAAGACACAGTCACTAAAGACTTATAAACAATCATATGC-CAACAGATCTT-ACAActtagaagaaatagacaaaatctTTGACATAC-----GTATCTTAAGTGATtcatgaagaaatgagaaacGTGAATGATACTG----------------------AGTTAGTAATAAGGTCTCTCAtcaaagaaaaagccagaaa-aaatgGCTTCATTAC-TAATTTTACCTATCACTTAAAGGAGAACTAATACCAATTC-ACTTAGATtattgcaaaaaattaaaaatgaagaaattctcCCAAACTGATTCTAGGAGGCCAGCATTATTCTGACTCCAAAATCAGATAAGaccattaaaaaaagagagaaaaaagtacaggccAATATTCCTGATAAACATAactgcaaaaatcttcaacacaATATTAGCAAACTGAGTCAAAAGA-------------TTAttcatcatgatcaagtggaattcattc-aaGGAGataagaatggttcaacatacacaaatcaatgtaATATGCCACATCGCACCAATATTATGAAAGATCAAAACCATATAAGCATCTCATTAGACACAGGAAAAGCCCTTGATAAAATTCGATATCCTTTCAC---AAAAACTCTGAGCAAATTAGTTACAGAAGGTATGCGTCTGAACACAATAAAGGTCCCACATAACATGCCCCATAGCTAACATCACACTGAATGGACAGAAGCTGAAACCTTTCTCCCAGAAATTTGGATCAGGACAAACATGTCTACTTGCAACATTTCTATTCAACGTAATACAGGAAGGATTAGGCAGCAGAagaattaggcaagagaaagaaatgaaaggcatccaagttaaagagaaaaaagccaaatTGTCActatttccagatgacatga---tatattaaaaaaacct--aaaatttcaCCAT---ACTGttcaa----ataaacaaattcagtaaaattAA-AGATTCAaaac-aacatacaaaaatcagtagtgttTCTATAAACCAATAGTGAATTAtctaaaaaagaaatctagaaacATAATCTCATTTACAACagctacattaaaaataatgaaacgaaacaaaacacacacacaaaaaaaaaacactctgg--GAAGAAATTTTAGAGAGATATCTAccatgaaaactttaaaattcttatgaaagaaattaaaaaaga

a score=12990
s chr3           127775072 595 + 160039680 AGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCACGTGGAA--ACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACT-------AGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC--TAAAGGGCACAGGGACA----AAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA----------CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGATGAAATGGACAAAT
s HiC_scaffold_1 121849223 586 + 233722169 AAACtgatttttcatgaaaataaaaacaa-------atatcagTTAAGTGTTATTGATTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGA------ATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACA--AagacaatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTAT-------ttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaat

a score=14476
s chr3           127775120 858 + 160039680 TGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAA------------TTCACCCAAGAGGAGTAG--ACGGCAGGAAATAATCAAA-CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACA----AAGATAGAGAACTTCAGACCAAT-TTCTCTT
s HiC_scaffold_1  77585700 816 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCATGACAGTAAATGCCtata-------------------------------tttaacaa-atatgtaaaaa----aaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAAGATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACA--GAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcag-gataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGA---CAATTTAAT--ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt

a score=33001
s chr3           127775120 3034 + 160039680 TGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAA-AGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT-------AGACTC---ACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA-AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATT-AATAGTCTCCCAACCAAAA--AAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGT--AGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAA---------TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaatta---aggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaattt-gtctggaataacaaaaaacctaggatagc--aaaaagtcttctcaaggataaaagaac--ttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagac-actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca-----caggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagatagggga---------------------ctaa---tatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcac----ctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacac--tcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggaca-tagtactaccggaggatccagca----atacctctcctgggcatatatccagaagatgccccaacagg-taagaaggacacat-gctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaa---cagaggaatggatacagaaaatgt--------ggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaa--tggatggacctggagggcatcatcctgagtgaggtaacacattcac
s HiC_scaffold_1  38267598 2854 + 233722169 TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAG-AATGCAGGA-GAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaat-taaaggaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAGGagctagaggaaaaaaaaaatcaaa----cataagag------agggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggtttttaaaaacaaataaatattaaaaagacccTTTATTTATTATTAGAGTTTggattaaggaaaaaagagaaatgata-tagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGGTGAATTATTTGG-CACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATAATGAAACAGGACTTTGGAACCATAATTTAATAATCTC---ACTGAAAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaa-tatttcttgaaatcaaagataagaaaatacttg--caaattcACTT-ACGAGGCTAGCATGACCCTGATAAA-AAGGTACATtaggataggaaagaaa-agaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGAATCCTCAACAAAAC---------------ACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGTTA---------TACACAGAAA--------AaccttttcttctaaaatcagaGAGAAGACACGAATG------TTCTCATTTCTATTTCAGAGGAGCAGTGAAAGTCCCTTCCAGAAGAATAAGCATAAAAAATAGGTTAAAAAGCATCTAAAccagaa---agaaagtaaaatggcTCCTATTTGCTGATGTCATCAAA----------------------------------------------------------TCAATGAAGTTGCAGGATA-AAAACTAACATGCAAAATTAAGCAACATTACTACAAACAGACAATGAAGTATTTGAACATTTTGAGCAAGAAA----------ACGACTCTATTGAGTA--cattaagtatttaaaatacttgggaataaattagaaaaatgagcTAAAATATCTCTGTACTCGAG---TAAAACC-----AAaaagtaattaaacagaaaaat------aaatagaaagatattcaaCATCCATGAATTAG------------TGTAAAAACATC-AGTATACCCAAAGCAACCTACAG--TCAGTATGATTCCTATTAAAATGCCAGTGTCTGTTCTCatagaaatagtaaaataaatgttaacttttaatataaaatcaCAAAAGACTGTGACCAGCTACAGAAATctt----aagcaaaaagaacaaaccTGAAGCCTTCATACTACCCGATTCCCAAATCTGCCACCAAATTATTTTaatcaagacagtgtgacacTTGAAAACATTCAG---AGCAGCACAATAGAACA------ATCAGCTGAGAACAAAGTTACACATTTATGGCCAACAGATCTTCAACACAGTA-CCAAGATCA--CAATAGAAAAAA-----CTTCTTTAATAACAATTGCTGAGAAAACT--------TTAATTCACAGAATGAAACCAGACTCTTATTTTGTACAGTATACAAAAGCCAgcttaaaatagataaaagatttaAGCATAAGAAAGCAAACTACTGGA----AGAAAGCAAATAGAAGAAACAAACCTC-------TTGGCATCCTGCTGGGCGA----CTTTGTAGATGACCCCAAAAGCAGAAATAACAAAAGTAAGAGTGGATCAGTGGGATTACATCACATGAAAATGCTCT------GCACAGAACAGTGACAATTA------------ACTAGCAGAATGGGAGGAAGTATTTGGAGATTGTACATCTGATAAGATCAGCACCTTATCAAAAACATCTCTAAATGTACccaaaatacatgaagaactcaAGTTGCTCTATAGCTAAGTAT-AAATAATCTGGTTTTAAAATGGACAATGGA--TAAATAGATATTTTTTGCAAAGATGAGT--TACAAGTTGACTGACGGGTATATAAAAGTGTGTTCAATACTACTAAGTCTAAGGGGTGTGCACATCAAATCTATAATGAGTCACCATACCACTCTCATAGGCACAGTTactatgaaaaagacaaaagacaataaaagttGATAAGGATATGAAGTAAGAGAAACTCTGTATTCCA---TTGGTGGAGATATAAATTGGTACAACCgtcatggaaaacagtatggatattcttttaaaaatgagaaagtacagcTATCACACAGCTTGGCACCTTATACATTT-----GTCTGTACTCATGGGATATGAAATCAGGATGTTACGGAGATGTCACTCCA--GTGTTCACTGTGATGTTACCTAAGTTAGCT--AAGCTGTGAGT--TCCATCTGAGACTCAAGAGCAAATAAGCCAACAAATAAGATGGGCTATGAAGATATAAGCATACAGTAGAATATTACTCATTT-CTAAGAAGAAGGCATC-------TTCTTGTGCTAACTTGAAGGAACTTGGAGGACATGATGCTAAGTAAAGTAAGCCAGGCAC

a score=10952
s chr3           127775201 465 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattcacacatcaggaaa------acagaac-----------------------ctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacataaattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=35021
s chr3           127775229 1547 + 160039680 ACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCT-AAAAGCCCTAGAAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAAC-CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATT---------------------------------------------------------------------------AATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAG--GTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA-----AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAA----AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagat
s HiC_scaffold_1  44540947 1570 + 233722169 ACCGGCGGGACCCAGTGCAAACAGTCCTGCAAGGGAGGTTTACAGCTGTGCACACCACATGGGAAAGGCAC-AGGGAGCCCGCATAAGTGACCCGATGGTGTTTTTCGAGGGGCCTGGAAAAACAagaaatccaaat----ccaaagctaggacaaggaggaaaattataaagatcgggacagaaatcaatgcaattgagattttttaaaactac----agagTCAACGAATCAAACAGCTGCTTCTTGAGAAGAATAAACCGAAGAGACAAACGCTTAGCCAGCCTTACCCAAAAACGTAAG---AAAAGACCAATCAGTGAacttagaaattaaaaaggcaaaatcaaaaaAGACACCactgaaattcagattattagtaactactt----GAAAACCTGTACACCAATAAATTGGAGGatccagaagaaatggagagattcctaaATACATGAGAATTACCAAAACAgaagtaagaaaatataaaaatcttgaaTAGGCCAATAACAGGTAGTGAAATTGAAgcaataattttgttttggaattctatattatcatttttatccttttttcattttaagatttaaaaaaattgaaacaataataaaaaaaacctaccaaGTAAGAAAAGCCTAGGACCCAATGAATTCACCAGTGAATTCTACAGAGACTTCAGGAAAGATCTAACAGCCACatgcctcaaactcttcaatgacactgaaagggaagcagtaccc---CCAATGTCATTCCTGGAACAAGCGTTcacctgattccaaaaccagacaaacagCCAAGCACAAAAGAGAACTACGGACCGATCTCTTatatgaacatagaag-aaaagtTCTCaggaaaatactggcaaacagagcACAACAAGTCATCATCAGAAAGTCGTCACACATCA-GACCAAGTAGGCGCCATCTCAGGG---------TGGTTTGATGTATGCATTTAAATCAATAGATGTCATTCaccacagaaacagaaacaaggatgAGAATCACATCAGCATCTCAGCAGGTGCAGAGAAAGCCTTTGGCAAAGTCCAAAGTCTATTCATGA-AAAAACCtagaagaaaacagatataaaagggctttatctcaatctgat-agagccatctatgacaaaccttaTGCCTACATTATATTAAAAGGTGAGagatt--------tctctctaaaatca-ggagtaGA----------CACTCTCACCACTCCTGTTTGACATAGCACTCAAAGCATTAGCCAGATCagtcaggaaaaggaaagaaataaaaggggta-ggATAGGAAAGGGGTAAGTTAGACCATCACCATCTGCAGATGGTCTGATTCTCTATAAAGAAGGGCC--AAAATGCCACCAAAA-----CTGGTACAGTTAACCAGC-TCAGTAGTGTAGGAGGATTCAAAATGAATACACA-AAACCAGTAGTGTTCCTGTACCTCAACAATGAACTTACTGAGAAGGAAG-TGGGAACCCAATACCATTTCCAATAGCgataaa-aattaaacaca----ggaattaacctaaccaagagaGTGAAAGATCTccaccatgacaactacagtacCCTGAAAAGGGAAATCAAGGAGAATATCAGGAAGTGGGGAGAT

a score=16159
s chr3           127775256 864 + 160039680 TAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGA---AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAA--TAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGC--------TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA
s HiC_scaffold_1 187840076 856 + 233722169 TGAGGAGAAAATTTATAGCCATGAATGACTTCATCACAAAAACAGAGTAAGCCCAAATAGATATTTTAACCACACACCTCAAAGTCTGAGAAAAGCAAGAA-TGATTCCAAGTAATAGCCAGTACAagcaagaaaattataaaaaatgggagcaagaaaatcaatgaaattgagacaa-agtaattaaatgaagaattaatcatg-gaaatgttcatt-tttgaaggaataaatgaaatagaaaaatcctTAGGCAGTTTATCCATA----------AAAAAGTCCAAataaatgcaattagaaataaaaatgatgaaatcatAGCGAACACtgccaaaatgaaaaagattatt-gACTATTTTACATA--TCTGGATGCAATTAATTGGAGATTTCAGAGTTAAATGGATACactcctagatacatatgaattctcaaaactgaaccaagaagatttaaaaacactCAATA-TTCAGTAATAGATAATAAAATGGAGGCAGTAATAAAAATACCCTACAAACTAAGAAAACTCTAGGTCTGTAttcattcactgatgaattctcaAAACACTTCTGGTCAAATCTAACACCTATGTATTTCAAGATgcttagtgaaattgaaaaggaaggggTACTCCCAAAGTCCTTCCTGGAAGTTATCAGTACCTcgatttcaaaaccagacaaggacccagtggggggaaaaaaaaagaactgtgtaTCAACTATTTTAATGTAGACAGATGAAAAATTCCTCAAGAAGATACTGGCAATTAGGGCAACCGAT----------CACCAAAGAGATCATACATCTCGACCAAACAGGCTTTATCCCAGGGCCTTGATGATGGTTCAATATAAGCAAATCAGTAAGTGTGA

a score=60736
s chr3           127775295 2404 + 160039680 AACATGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTT-CTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAAT-AGAAGTAGA-AGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCC-----CACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCA-AGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAA-TAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaa--agtcttctcaaggataa-aagaacttctggcgga----atcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgac------------aagggag---------------ctaaaaccatccag------------------------tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaag----atcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaa-agacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctt--tacctatcctaaatcagataggggactaatatccaacatatata--aagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac
s HiC_scaffold_1 120882403 2354 + 233722169 aaaacgaataagcccaaataaataacctagcgATGAACCCTAtaatcctagaaaaacaaaaacaatccagACCCAGAGCTAGtccaaggaaggaaattatacagatcagagtggaaatcaatgaaattgagacaaaaattac-----aaagaattaatgaatcaa--agttagttctttgaaagaataaacaaaatagacaaaac---agccaatataatgaaaaagga--gggaaaaggcctacatcaatgcaattagaaatgaaaaagatgaaatcacaacagacactgcCAAGATTAAAAAGATTATTAACTACTT-TGCAAAA--CTGTATGCCAATTAACTGGAGAATTCAGAAGATATGGAtagattcctaaatacatatgagTTATCAAAACAGAGCCCAGATTTAA---AAactctgaataatccaataatagacaatgaaattgaaacagtaataaa-aacttaccaactaagaaaagcccaagtctgGATGGATGGACTGCTGAATTTCTACAAAAATTTCAGAGAAGATCTAATACCAATGCTCCTCacgctctttaatgaaattaaaagtagaGAAGCACTC---CCAAATCATTCCTGGAATACAGAATTAACATGACTCCAACATCATACAAGgactcaactaaaaaaaagaactatagaacaatttctttaatgaatatagacgtaaaaatcttcaacaagaaACTGGCAAACTGAATGTAACACATCACTGAGAAGATCATTTATCATGACCA----------------------------TAGTTTAACatactcaaataaataaatgtaacatatcacataaacagaagcaagagcAAAACTCATATGATCATCCCAATAGATGCATAGAAAATCTTTGACAAAATTCATTATCCTTTCATGATTGAAAACACTgcagaaaataggtatagaagaaCCTTATCTTAac-tgataaaagctatttatgacaaacctactgccaGAATCCTATCAAATGGGGAAAAATTGAAACCTTtctctctaaaattaggaacaaaac-aGTCTGCTATGAGCACTATCAGCATTCCTGTTCAGCATAGTCCTTAAAACATTAGcaagaacaattaggcaagaaaaaagaattacaagggatatgtataggaaaagaagaagccaaattataattatttgtaggTGACATGTTTCTCCTCATAAAAGATCTCAGAAACTCaacaaaag-actcctagaatgaATAATCAAATTTACAGATACAGTAGGATACAAAACTCAACACgaaaaaaccaatagcattcctctacactaatAACAAACCCACTGagtaagaaattaggaaacaaataCCACTCATGA-AGacaccaagaa---aaaataaat-------acttaggctaaagaagtgaaagacctctacaatgaaaaatacagtgctctgaaaaaggaatCAAAGG--GACATCAGAAGATGGAAAAGTATCACCTGTACCTGAATTGGTAGACCCCGTG-TACCAAAATGGCTATATTTCCAAAATCGTTTTATAGATTTAACACACTTCCAATT-AAATACTAACATGCTTCttcaaaggaat-gaaaaagtaatcctaaaatttatatagaaccaGAAGAGCCCTAGAATGGCAAAAGCAGTCTT-----GAGTAACAAGAGCATATAGCAGGAGACATTGCAATCCTGGACTTCATGTTATAGTACAAAATAACAGCGAGAGAAACAGCTTGGTATTAGCCTCCA-ACAGGCATGATGATCACTGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGCTAGGGGAAATATAGccattcaataaataaattct----------gttatCCATATGCAGAATATTGAATCCAAATCTGTATCTCTTTCCAtgtactaaacaaaaataaaaatggatcaaagaactaaatgctaaaacagaaacacttaacccGCTACAAGATAAAATGTGTAAAACCCCTGAAGTCATAGGTGTATG------------AAACAGAACTGCAA----TTATACAATAAATATtaccaagaatcaataaatgtgacCGTATCAAA--------TTTCTGCAGAGCAAACAGACA--ATCagtagaatgaaaagacaacttatagaatggggaaaatttttgctagctattct---tcagacagaggattaatatctagaatgtataataaagaataaaaaatgagatccaccataaaataaaagacccaat--aaaaGTGAGCAAATAAAGTGAATACACG--TTTCATGTAAATA----CAAATGGctagtaaatacatgaagaaatgtttaacatgACTGACtactaaag------aaattaaaacaac

a score=18173
s chr3           127775420 761 + 160039680 GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCA---AGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1  95894463 736 + 233722169 gtgaaactaaaaaaaagta--caaaaaattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACC-------ACATTCA--AAAGAAACgattattaaaaaacaaattcatacaataaggaatgaaaagggtgaaatcactacagattctgtggaaatttagaagatcaccaatacttattttgaaaacttttacttgcataaaataaaaagcatagaaGAAACAGATAGATTTctggaaacatg--aattaccaatgCTGAATCAAGGACATATAAATTGTTAGAGCAACACAAtgtcaattaatgaaattgaa-caataattaaaaacttactgacTTGTTAAAGCCTGGGACATGATAGATTAACAGCtgaattccaaaagaaatttagaaaatatttaacatttggtCTTCTtcaaatctttaatgaaattgaaagagaatcaatgCTTTCTAAGGCATTTATGGGTGGAAGTAATACAATggtaacaaaaccagagaaagatccaaccaaaaaagagaaaaacatgccAATATCTCTAATGCACAGAGAGGCAAAAATCCTTA-TAAAATGCTAGCAAGCAGAAATCATCTAGAAGT--TTAGAgca---------catgaccaagtgggattcgtgCCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGTACTATACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=17516
s chr3           127775423 758 + 160039680 GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACAT---------TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1  95901303 750 + 233722169 gaaactaagaaaatagtacaaataattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACCAC--AttcaactttatcaagaaaagataattaaaaaacaaattcatataataaggaatgaaaagggtgaaatcactacagattctgtggaaattcagaagatcaccaatacctattttgaaaatttttagttgcataaaataaaaagcatggaAGAAACAGATGGATTTCTGGAAACCTG--AATTACCAATGCTGAATCAAGGATATATAAAAGCTTAGAGCAACACAAtgtcaattaatgaaattaaag-aataattaaaaacttactgacTTGTTAAAGCCTGGGATAtgatagattcacagctgaattctataagaaatttggaaaatatttaacaattggTATTCTccaaatctttaatgaaattgaaagagaataaatgCTTTCTAAAGCATTTCTGGATGCAAGTAATACaatgataacaaaaccagagaaagatccaaccaaaa-agagaaaaacatgccAATATGTCTAATGCACCGAGAGGCAAACATCCTTTATAAAATGCTAGCAAGCAGAAATCAGAATATCATCTAGAAGTTTGGAGca---------catgaccaagagggattcatgcCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGCACTACACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=5517
s chr3           127775444 1121 + 160039680 AGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATC-CTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAA----TCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAA--AGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCC---AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTAC-CA-----GAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATA
s HiC_scaffold_1  25387469  824 + 233722169 aaaatcaatgaaagtaAGGGTTAGTTTtcaga-aagatgaataaaatcAGCAAAACTTTAAttagatt-----aagaaaacaaagcagaagtggcaaataaataaaatcacaaatgaaaGAAGAGATACTATATCTGATACCACAGAAATATAAGGAATTATAATGGCCCTTTCTAGAAA-TTAGATCTCATTAAATTATATAACTTAGA-AAGACAGACAAATTTATAGA--AGCTCcactttctaaaacaaaaatgattagGAAAAAGAT----ATTCAAACA-----ATAT------GAGgattgaaa----ttaataa-aatataccaCCAAAAAAATGAGCCCAGGATCTGCTGCCTTCGCATTTGAAATCTGACACACAATTAAGGAATTATTAATAGTAAGCCTTCTTGAACATTTCCAAAATATTGAA-TAGGTGGTA----ACACTGAAATTCATTTTAGAAAGTCAGAATTAGTCCAACAAAAacactatgaaaa--------------agaaaaggacaggcCAATATCTTTGATGAGTATGTTTGCAAATATTCTCAACAGAATGTAAGTAAACTGAGTTTAACATCATATGAAAAGGAGTATTCAACATTATCAAATCGAATTTACCCTAGG-----AGgga------------------------------------------------------------------------------------------------------------------------------aaaatttt-----------------------------------------------------------------------tcaaagtatat--------------------------------------------------------tttcCCCTATATACCCAAAATAATATGGCAGGCCCTGGCTATAGAAATTAAGTAGGAGAAAATAATCAAAGGCACCAAAATTGGAAAGGCAGACGTAAAACTGTCTGTGTTTGCAGGTGACACAACCATACATATAGAAAACTCTTAGGATTCCATACACATACAAAAACTAttaga----ataaacaaattcaat--aatGGCAGAATA

a score=10897
s chr3           127775458 671 + 160039680 GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAA-ATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAA---------------------TAGTCTCCCAACCAAAAAAAGCCCAG-------------GACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA----AGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATA
s HiC_scaffold_1  95326533 669 + 233722169 gaagaactggttctttgaaaaaat-------------acgCTGTTATC-AAACTTACcagtagaaacagaaaagagactcagatgaaaacaattagaaataaaaacggCAA------ACCAAAACTCTACTGAATCCAGAACATAGTCA----CATCtgtgaaaaattatattccagCAAAAGGTAAAACcttaaaaaatatggaaagatcTTTATATTTGTACAAATTAGCAAAGCTTAGACA--ATAAGACAGAAAATTTTGAATAACGCAAAATTAAGTAGctaaattgaagaagtaataaaactaaaactaaaaaatgtttttaaaaactaacctAGAGAAAGTCCAGCTAAGAATCACAGGGCTTGATGAATATATTTCTGAATCCTACAAAAGCTTTATAGATATTAGTTATATCAACATATCTCTTCAAATTGTTCCATGAAGTTGAAA----------------CCATGCACTTTGTAGAAGCCAGCATCTGTCTGATCCTGATACTTAACAATGAccccacaaaaaaggaaaactatattcCAGTCTCCTTACTGAACATGAATGCAAAAATCCTAGAAAATATATTAGCTAACAGAATGAAACACATCATCAAAAACGTCATAGGTCAAGACTAAGAAGGTTTCATGCCAGAGTTGCCAGGATGAGTCAGCATATAAAAA-ccacaaatgtaatacaccaca

a score=63700
s chr3           127775479 2666 + 160039680 AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAA------TAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATAC-GAAAATCCATCAATGTAATC----CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaact--aaggaagtgaaagatctgtatgataaaaacttcaaat-ctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaac-tcaattcttcaacgaattggaaggagca-----------------------atttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaa-----tagaat---tgaagacccagaaatgaacccacacacctatggttacttgatcttcga-caagggagctaaaac----catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctt-----tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggt-ggacttcagaaaatcaaataaccccatt--aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctgg-cggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1 101526179 2590 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaa----------gaaatgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggta--taataaaaaaaataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaaccagacaaaga---------------aaaCTGAATGCCAATTTCCTCAAAGAATGTAGATG-GAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaaaa--taggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACCTAGAACAGTCAGGCAAgtgaaagtaataaaaagaatgtgtataggaaaggaagaagtcaaattgttCTTATCTGCAGATGACAGGATCCTCTATATAGACTACCCAAGAAATTCCACCAAAAGTCTCCTACA----ATAACCAAATTTAGAAATGTATCAGAATACAAAATTAgcacaaa-aaatcaataacattcctgtacatcaataatgaattcactgagaaagaaattaggaaagtaACAC------TAAtaacatgaagaaaaattaaatatctaggaattaacctaactcCCCAAAAGTGGAAGATCTCTACT-TGAAAACTaccagtactctgaaaaaggagatcaaagagaacatcagaaaatggaaagatatttcctgTTCCTGTATAGGCAAAACTAATAGTGTCAAATGTGCACTTTCTTCAAagctgatatatagatttaatataatcctaataaaaatatcaatatgtatccctcacagaactagaggaaaaaaaaaatcttaaaattcagaaaacaatcctaaattcatatggaaccagcaGAGACTccgaatagcaaaagcaatcctgggcagcaagaacaaagca-------ggaggcttACAACACTCACCTTCAAGTTACATTaca-agctacagtgataaaaacagcaaggttttggcacaaaaacagacatgtagatCACTGGAACCCACTAGAGTGTATGAAGAC----AACTACAAGCACA-----ATTGCTATTTGAGCTTTGACCAATGGGAAGAAAACATAACATTCTTTggaggaaagataacctctttagcACATGGTACTGAGAAAACCGGCAAT--CCATATGCAAAGCTG------gacctatatctttcaccatgtactaaactgaaattAAAGTAGATCAAag-gctaaatattaaaacagaagcccTAAACCTACTGGAATATacaatagataaaactcttgaagtcattgttgtaggcaaggactttttgAATAGAACACCAGTTTCACAATAAATAACATCAAGagtcaacaaatgagattattatatcaaataaa-----aaagt-------aagcaa---------CCAACAAG------AGACAACGTACAgtatgggaaaatttttttttgctagctattcc---tcagacagaggacaaaTAT-CAATA-ATATGAaggactcaaaaaaatcagactccccaaaataaaa-gatcaaattaaaaaaaatgggaaaCCAAAATAAACAGACACTTCTTA---GAAGTATA---AGTGgccaaaaaatacatgaaaaaaaagttcaacatctctGACCACTAGAGGAATGCAAATCCAAGCTATACTAAGAtcctatcttactccagaaagaacggcaatcaccaagaaatcaaacaataacaaatgctggtggggctg-agTGAAAAAGGAGTCCTTTAACATTGCTGGTGGAAACATGAACTAATACATCCCTTATTGAAATcactatggaaaatatttttaaaaattaagaatagtaATTCTATTTGATCCAGGTAtttcccttctaagtatcttcttaAAAG----------Agctaaaaacatcatat-----------tttttAGCAGCAGAATTCATAATAGCTATTCTTAGGAAGCAGACTATGTATCCATGAATGgatgaagggacaaagaaaatgtatt---tttacaaagTGGAATAATATTCAactttaaagaaggataaatttgagacatttgtaggaaaatggatacgcTTA------Agcgtgttaagtgaaataa

a score=29316
s chr3           127775490 2653 + 160039680 TAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAG--ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCA-AGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTA-TTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTC-CAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAA---------------------------AAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA-CCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAG-AGGAAGTCAAA-ATATCACTTTTTGCAGATGATATGA------------------------------------TAGTATATATAAG----------TGACCCT-----------------AAAAATTCTACCAGAGAACTCCTAA--------ACCTGATAAACAGC----------------TTCG-GTGAAGTAGCTGGATATAAAATAAACTCAAAC---AAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTCTCAATAGTCACAAATaatataaaat---------------------------atcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaa---acttcaaat----ctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaa---cattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgc--aaatttgtctggaataacaaaaaaccta-----------------------------ggatagcaaaaagtcttct-------caaggataaaagaacttctg--------gcggaatcaccatgc------------------------------------------------------------------------------------------cagacctaaagctttactac-------------------------------agagcaattgtga---------taaaaactgcatggtactggtatagagacagac-----------------------------aagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagca----ttttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacag-attgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaat-------gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatg----------ctggcgtggatgtgga-gaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaa---atcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacaggta-agaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggt
s HiC_scaffold_1  72102898 3102 + 233722169 taaaaaaattcttattcaAACTcacaaaaagg---agaggaaagaaccATATCAACTAA-TCAgatgtgaaaaagaaattaaatcacaACATATACCCCAGGTGTTCAGAGCTGTATCA----------CAATATG----------------------ATCTAGAAAATATAGACAGATTTTTATACTCATG--AattaacaaaactaaacaaaaaggatatttaaacatttgaaaattccTGTAACAGCCTGTGATTTTTGAGATCTCAGTCAAGGATCTGCTAACTCAAAATATCCCAGTACCTGATGGAGTCACTGCCGAATTTTACAAAAACTTCAAAGATAATACCTCTACGTTTCT---CCAACTCTTTTGGAAAATTGAAATGAAAGGAGGTCTGCCAAACTCCATCTTGGAAACTACCATTATGCTAAtagcaaactcagagaaagaaTTAACTAC--CAGAAAACTATAGGCCGATTTCTTTAATAATCATGGAAGTAAAAATGTTCTACAAGATATTGACAAATAAGATATAACAAATCATGAAAAAGTTCATATATCATAACAAAGTTGGCTTTGTTCTCAGGGa---aaggatggctcaacatacacaaacctatgaatgtaatacatcacataa-cagaatcaaaaataaaaatcacat---tatatcAATAGa--cacaaaaagcatttgataagacCCAACATCTGTTTATGATCAGTGGCTCAAGTCCCTGCCTGATTTTACAAACTCTGAAAACAGTAGGCACAGAAGTATGTTATCTTAATTGTATAAAATGCACTCATGGTAAAACTAATG--CAGAATACTACTAAATTGGGAAAACCTGAAAGCATTTGCTGTGATATCAGGAGCAAAGACAGGCTGTCAGCTATCACCTTCCCTATTCAATTTAGTACTCTAAACTTCAGCCAGAGAAACtaggtaagagaaagaaaaaaatgtg-tatacacaggaaaggaaaaaagtcaaatatatatttacttaagaatcaaatagggctggggatttagctcagcagcataaatgtctgcctggcaaatgtgaggttgtgagtttgattcccagtaccagaaaaaaagaaaaaaaaaatcaaacaattccTAACATAGGACAACCAATAATCTACCAAAACATTACTAATATTCGTgttaag-aaaaagaggaaaaatattagcaaataaaaaatcaataatgtctCTCCATGCCAACTCCAACCACTgcgaaaaataatttaagaaaatatcactTACATAAGCTTCAAAGAAGTACATAACCGggggtggtggctcacacctgtaatcccagcactcgggaggccgaggcaggaggatcattgcaagttcaagaccagcctgggctacacagtgagctcaaggcaagcctgaactgcacagcgagatcctttctcaaaaagaaaaaaaacaaaaaaagaaaagaaaaaaggaaaaaaattacataacctcagaattaacctaaccaagaaaaagaaaagtgcatACCAGAATATCTACATTAAACAGTAttgtgaacaacaacaacaacaa------caaaaaat-gaaagacatctcTTATTTCTGGATAGTTAGAATTAATAGCATTTTCAAAATGACCATTATCCCAAaattgatatatagatttaatgtagtccaaattaaaatatcaacagtattcctcacagaactagaaata-----tTGCTGAAATTTACATGGAATCAGAAAAGCCACAAAGAACAAATCAGGAGGCACCCTGATCGTGGATTTCAAGACATTTTACAAAACTACAATGTTAAAAGCA-TCCTATTACTACCACAAAATAGACATGCACATGAATGGAATGGAATAAAGGAGACAGAAAGGTCAAGTAAATGAGAATTAGAGGGAAAAGATGGGAAAATGAGAgaagaataagaaaacagaaacaaggcTTTATGAATAAGGAGAAGAGGAGGGAttaaagagagaggagaagaatgGAGaataaagaatcaagaaatatcatgtacaggtgc--aaacAGCCTGTGAGTAATGTGatcattattatttctaaattaaaccaataaacttaattttaaaaaaaagaaagttatctaGGGACATTCAGctatctgatttttgacaaagggtccaaaA-TATACACTAGAAAAGTGATAGTAGTATCTTTTAACAAGtcgtgctggaaaaactgtttatCCCAATGCAGGAGATTGAATCTAGAGCCATATCTCTCAGGGTGCACTAccat-aaatcaaaatgaatcaaagatttagatattaaaggagaaacacttcatctgctagaagataaaacaaGCTAAAATCTT---GACATAAGCATAGCTAAGGACTTTCTGAACTGAATTCCAATTGCCCAAGAAACATTATAATGTATCAACAAGAGAGATTATGTAAAA-TTAAGAGTTTCTGCACAGCTAAGAAAA----CAACTGAGTAAGGAGACAATTGCCAATATGGAGAAAAGCTGCTAGGCACTCCTA----GGACAGAGAACTAATAACTgaaatgtataaagaactgaa-aacttaGATGTGTAAACATTTAA-GACACAATCAAAATATTTGTTACTGAAATGAAtggatacttctcaa--aagaaatgc--aattcc--agaaatatatgaaaaaataaagccaacACAAGATTTTTgg-ctttagagaaatgcaaatctaaACAATACTAAGATTCCATTTAACACCTGGAAGAATGGCTGGCATCAAgtactcagaaaaaagaaaaagaaaaattaatataacacTAATGAGGCTGCAAGGAAAAGAATTCTAAATTATTGGCAGGAATGTAAACAAGTACAATCATTATAATAACCATCAGTATGAGGAGtccttaaaatagtaaaaatgacaATTCCATTTTATACAGTTATTTCTCT-CTAGGTTTCTTCCCACAATGGACTTCATATTGTATTGATATGTATATGCTA----ATATTTATATCAACACCACTCATAATTGGTACATCTTGAAACTGCCATGTATACCCATCAGCAGATGCAT--ATATAAAGAATGTATCATGTATAAACActgaagtactactcagtcataagcacggatatatttgagtcatttgtaggaaaacaaatCTATCATAAACCCATAATACTAACTGAAAT

a score=59630
s chr3           127775492 2784 + 160039680 GATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAG-----------TTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAA---------------------------------------GGTACTCTACCC--------AAC---------TCATTTT-------ATGAAGCCACT-----------------------------------------ATTACTCTGATACCTAAACCACAGAAAGATCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAA-TCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAA-GACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCA-CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG-ATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaa--agaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaac---ttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac-cgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggct--------------aagatcaaaaattcaggtgacagcagatgctggcgtggatgt-ggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactg-gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaac---aggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag---aaactcacacaatatgtattcactgataagtggatattagccccaaacctaggatacccaagatataagatataatttgttaaacacatgaaactcaagaagaatgaagactgaagtg
s HiC_scaffold_1  64169318 2819 + 233722169 GACAAATCTCTAACTgatcttaccaaaaaagaaaagaa--aaggccaaATAAATtcaattacaaatataaaaggcaaaatcacaataaACTTTGCTAAAAGTTAGA---TTGTTAGTAACTTCTCCGAGAACCTGTTCTCTAAAGAAacggagaattcagaagaaaca-aCAGACGCCTACTTTGGTATGAATGACCAAAGCTGAtgcaagaagatataaaaatcatgaATAATCC---ATTAGATAgtgagatgaaagaagaattattttcttcttttttaacctttcaactaagaaaagcccaggtcctgatggattcactgatgaattc------------aggAAAGTTCTACTACTACCAttcctcaaactatttaatgaaattgaaaggaaataagTACACCCTATAAATGAGGTGTATATACAATGGAGGAATACTCTTCTCTAAAGAACAACAGGTTAcagccatttctaggaaaatggatgcactttcagaccataatattaagttaaGTAAATCAGATGGTTGACATTGCCAtcatttcaaaatcagaaaacaacccaaccaaaaaaagagaactttagcctaaactcttcaatgaacATAGACCAAAAAAGTCTTTAACAATCCACTAGCAAGTATCattcaacaaatcatcaaaaaaatcatACATTGTGCCCAGATAGGATTTATCCCAGGGTAGCAGGGATGATCCAACATAGACAAATGAACAGATGTGATACATCACATTAACAGAAGCAAAGGACAAAAGTCGCATGCACAACTCAATTGAAGCAGAAAATGCCAGTGATAAAAtttaacatccattcatgataaaaa--ctgaagaaaacaaacataGAAGAACCATATCTCatc-tgataaaagacatttaTGGCAAACCTACTCTCAAGATCATATTAAATATGGAAAAGCTgaagatttttctatttaaattcagAAGCAAGACAAGGATATTAACTACCATCATTATTGTTCAATATAATTCTTGAAACTATAGCCAGGAGAATCATCCCagagaaagtaataaaaaggCGTATGTGTAATTAAGGAATAAGTCAACTTAACATTATTTGGAGACGACATGACCCTCTACAT-AGAAaccccaaaaattccatcaaaagactcctagacataataaccaaattcagtagcatagagggatacaaaattaacacaaa-aactcagtaatattccTGCACCCCAATGataaactcattgagaaagaaattagag--ataacacttttcacaatatcattgagaaaaattaaacaca--ggaATTAATACAACTATGGCAGGGAAAGACCCTTATAGCAAAAATTACAGCACTCTAAAAAAGTagagattgaagaagacatcataaaatggaaatacatctaTGGTTCATagataggcagaatcaatatagtcaaaatggtcatactcctgAAACTGTTAAGTAGATTTATTGAAATCTCAATTAAAACACTAATAGCACTCCTCacaaaactacagaaaacaatcctaaaattcatttggaaccagaagagacctagaatagcaaaagcaatcttgggcAATAAAGACAACGCACAGGGCAACACAATCtc---cttcaagttatactacaaaggtacaatgatgaaaacaaaaca--attaacacaaaaacagaca--tggtTTAATGGCATAGAATATAGGGTGCAGACACAACTCCAGGCACTgtcagctatctgatctttgaccaAAGAGTCAAAAATGGATGCTGGGGGAGAAATAGCCTTTCTAATAATTGGTGATGGTA-AACTGGTATCCATATTGCATAAGATTGAATTTAGATCTGTATCTctcaccacatactaaactaaaataaaaatgtatcaaag--------ataaaactatgaaaacagaaacatttgatGTACTAGacaat----aaaactcttgaagacataggcataggcaagaacTTCCTGAATAGAACCCCAATTTCACAAGAATTAACACTAAGCATCAACAAATTGCATC--ATCAGATTAAAAAGCTGCTGTACAAAAAAGGGAACCATCAGCAGAATGAACACACAATCTACAAAACAGGAAAA----TTTA-CTATTCT---TCAGA----GGACTAACATCTGGAATACACAAAGCAATCAA-AAATTAGATCCCaata---taaaagacccaatcaCAAAATGGG-----TAACTAAATAGACACtccaca---gaagaaaatacaaatggccagtaaatacaCAAAAAGACGTTCAACATttctgatcattagagaaatgcaaattaagacaacac--agATTCtgccttactccagaaagaatagctttcatcaaaaaaaaaaaaaaaaaaaaacactagataACAAATGCAGCTGCAGCTGCAGGGGGGAAAGGAtcacttcttcattgttggtgggaatgtaaactagtacaatcattgTAAAAATCTGTATGGAGTttcttcaaaaaactgaaacaaaattctaAT---TGGTCCAGCTATTgcctttctaggtatctttctaaaagagttaaagacgttatattacagtgacacatgcataacTATGTTTGTAGTAGCACACTTCAAAATATCTCAGTCTTGGGAGTAAATTAGGCATTCATCAGCAGATGTGTGAGTAAAGATAGTATTGTATTTATTCATAATGAATTATTTCACTGCCATAAGGAAGAATAAACTTACatcatttatagggaaatggatacaacttgaat---tTATGTTAGgaggaataaatcagacacacaagttgaaatcatgcattgt---ttctcttatatat--------------------gaaaacccaaaatataa---acaaagagtaaaataaaagatagacaataagA---AATACTGAGATG

a score=35234
s chr3           127775540 1266 + 160039680 ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG--TTGACCATCT-AAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACAC-ATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaac
s HiC_scaffold_1 211124554 1199 + 233722169 atcaactaaa-caaaaatgaaagaggtgaaataaaaatgaacactgcCAAAATCCAGGAACTTACTGGGAAGTACTCCACAAACCTGTATGTCAAACAACTGGAGAACTCAG----------TATAGtactagatacatataaattgaCAAAACTTAACCAAGA---AGCCTTAAAAATCTTGAACAATGCCA---------ATgaaattgcaaaa-----caaaaacctaccaACTGAGAAGAGCCCAGGACCCCAAGGAGTCACAGCTGAATTCTGTAAAAC-TTCAGGGAAGATA-----------CtcctcaaatttttaaatgaaattgagagggaagcagTACATCCAAAATCATTGTAATAAGCCAACGTTATTCTGATCCTAACACCAAACAAGGGTCTAACCAAAA-AAATACTTATAagccaatttctctaatgagcatagatgtaaaaatctttaa-gaaatactggcaaacagagtataaaataattatcaaaaagatcacca----tgatcaagtaggctTTATCCCATGGATGCAGGAAggattcaacacatgcaaatcaataaatgtaattcatcacttaaacagaagcaagaacaaaaacagcatgaccatttcaatagacacagaaaaaacctttgacaaaatccaacatccattcatgataaaaaccctaaagaaaataggtatagaaggtCTGAATTGAAACATGATGAAAGCCTTTTATGACAAACCGACTACCAACATCACAGTAAGTGAGGAAAAGCTGAAAGCTTCCCATTTGAAACCAGGAAC-AAACAAGGATATCTATTATTACCACTCCTGTTCATTATAGTCTTTGAAATATT----AGAGCAACTGggcaagaaaaaataacaaaagggatTCATAGAGGACAGGACAAAGGCCAtacatcattatttgcagaagatatCATCCTTTCT-TATAAGACCCAAAacattccaccaaaagactcctagaattgataactaaattcatcagtgtagcaggatacaa---aaacatacaaaaatcagtaatattcATAGACCCTAATAATGAATTCACTGAAAAAGAAGTTAAGAAAACAAtgtcattcacaatagcatca---aaaattaagtattttggt---------attaaggaagtaaaagacctctacaatgaaaatgtcATCAGaccaaaaaaggaaattgagaaggatatcaaaaaat-ggaatatCT---ATAATAGTTGATACACTGGGTCAAC

a score=43201
s chr3           127775543 1740 + 160039680 AACAAAATCAGAAATGAAAA-GGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTT---GACCATCTAAACAGTCCCATATCACCTAA-AGAAATAGA--AGCAGTTATTA---------ATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGA-TCCAACACCCATTCATGATAAAAGTTTT---------GGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaaga--tctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgcca-aaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaa--agtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaat----------ctaagtggatcaaggaacttcacataaaa
s HiC_scaffold_1 167461759 1709 + 233722169 aagagaaaaagaaaagaaaacaggtgaAATCATTGTGGACACTgtcaaaatcaagaaaaattttaGTAACTACTTTGCAAACCTATATGCCAATAAAttggaaaactataaaaaaacGGA----TTCccagatatatatgaattatcaaaattgaaccaaga--aggTTTTAAAACCCTAAAAAAATCCAgtaacaagcagtaaaaataaaccagtagtaattataataataaaaaacctatcaactaagaaaagcccaggagctgatggattcattgctgaattttacaaaaaaactCAGAGAGATCTAACTCCAATTCTTATTAAGCTCATTAATTAAATTCAAAGGGAAAGAATACTGCTAAAGTTATTGCTGGAAGTTAGCTTTAccctgatttcaaaaccagacaagggcctaaccaaaa-agagaacttacaggccaatctctttaatgaacacatatgcaaaaattctcaa---gatgctggcaaacagaattcaaAAA-------------GTATATATCATGACCAACTAAGCTTCACCCTAGGGATGTAAGGATGGCTCAATAAATGCAAAgcaacaaatgtaatacattacataaatagaagcaaagacaaaaaccacacgACCATcccaa-agacacagaaaaggccTTTGACAAAAATCTAACACCCATTCATTACAACTCATTTATGCACAGTGAAGAAAACAGGTACagagagatttcatctcattttgataaa-gccacttatgacaaacctactgccaaTATCACATTAAATGGGGGATAACCAAAAGCTTTTCCTCTATAATCTGGAACATGGCAAGGATATCCACTACCAACACTCCTTTTCAATATTGTACTTGAAATATTAGTCCAAACAAT----CAGTAAAGACAAAGTAA-AGAATATGCAT----AACAAACAGATCAAATTATCACT------AGTTGACATGATCCTCTC------AGACtccaaaaattctaccaaaaaaaTT----ACGGAATAACataattcagcaatgtagcaggatacaatcCACAC---AAAAATCCAGTG---Ttcttgtacaccaataatgaattcactgaaaaagaaattagtaaaaaaacaccattcacaacagcatcaaggaatat-taatacatagaaattaacCTAATTAAAGAAGTGAAACACCCCtaaacaatgaaaactacagtactctgaaaaagggaaTCAAGGAGGA-CAATGAAAGTAGAATAATACCC--TTTTACTGGACAGGCAGAACCAATACTGTCAAAATAGCCGTACTTCCAGAGATtgacatacagatttaatgcaat-ccaatcaaaataccaacagcatgcttcagaaatatggtgaaaacaattttaaaattaatttggaactcAAAGAGACTCAAAATAGTAAAAGCAGCCTGGGTAATGAACAAAGTGTT-----AGGCAccacaatcccagacttcaagttacattacaaagctacagt-ataCAAACAGCATGGTAgtagcacaaaaacagacataaagATCAATAGGACAGATGTGAGGAAGCAGAAACAATCTTAGACCTATTCAGCtatctgatatttgacaaaagagccaaaaacaTATACTCGAAGAAAGCCAGC---CTCAAAA--TAgttttgggaaaactggctatccgtATGCAGAGGATTACACCTATATCCATACTTATCACTGTGATCTGGGAAAAACTTGGCTAGCTACTAAGTGG-TAAGgcaaaattatgtaaaa

a score=22540
s chr3           127775584 880 + 160039680 TGAAGAAATCCAAAACACCA--TCAGATCCTTCTACA-AAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATATCTGGACAGATACCAGGTACCAAAGTTGAATC---AGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGA---AGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAG--AACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA
s HiC_scaffold_1  66567775 862 + 233722169 TGAGGGAGACGAAATCACCAATTCAGAACATACTACTTCAAAATTATATCAcaacaaattaacaaattttaaagaaatgcatgGATTCCTAGACGCCTAGTGACTACCAAAACTAGCCCTTGAAGACCAAA---ATATGCTTAACAACTCAGTAACAACCAATGAAATTGATAACATAGTCATTTATTAACTTA-----AATAAAACCCAAAGACATGAtgaatttactgctgaattctacagatCCTTTGAGCATGTTATATCACCAGTATTCCTcaagttcttaaaaaaaaataaaatggtaga-atactcccaaattcatttatgGAAACCAATGTTACCCTGATCCCAAAACTGGATAAAGAACTAACATAAA---AGAACtgtaggccaatctccttaatgaattTAGGAGCAAAAGTCTTCAGCGTGATCC-----AACCAAATACAATGTAGTacattatcaaaaagatcatacatcatggtCAACTaggtttcatcccagagatgcaaggatagttcattatacacaaatcaataaatgtagtacagcATATAAAGAGGagcaaagtgaaaaaaagtaTGATTTTATCAACAGATACAAAAAAGGACTTCAACAAAACCCAACACCCCTTCAGGATAAAAACCCTAAAGCAAACATGTATACAAAGACCACACCTGAATAGGATAAAGGGTATTTATCATAAACTGATatccagaatcatattaaatggtaagaaactaaaactattatgcctcaaa------acaagacaaggatatccactatcacctctTCTATTCAGCATAATACTTgaaa---cagccagagcaatt----agttaagagaaataaaaatgatatatat--gaaaggaaaaactcaaatta

a score=21931
s chr3           127775669 680 + 160039680 CTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-------------------------GAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
s HiC_scaffold_1 111277627 709 + 233722169 ctagatacatatgaattaccaaagttgaatcaagaatatataaaaattctaaataactcaatatcaataAGTGAAATtagagatgtaattaaaaacctatcaacaaagaaaagcccaagccctgatggattcactgttgaattctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcgaagaCTTTATatgactacttctcaaactctttaattaaattgaaagggaagtaacaTTCCCAAATTCCTTCCTGGAGACAAGAATTACTCTGATTCTAAACCTAGAGAAGAACACAACTAATAAAGAGAATTGCATGCTAAATTATCTAATGAACATCAATGTAAATGTCCTCAATAATATACTAGCAAACAGACTGTATCGAACTgtcaaaaagattgtacaccattGCCTAGTGGGATTTATCACAGGGAtacaaggatgattcaacatgc-aatatccataaatgtaatgcatcatattaacagaaacaaggacaaaactTATATGATCAactcaagagatgcagaaaaagtttttaataatgtTCAGCATCCAttcgtgattaaaaaaaaaaaacctacagaaaattggagtagatggtcatTGTTTCAACCTAATAAAAGca--ctatgacaagccaacagccaacatcatactaaatgcacaaaaacttaaaacttttcctctaaaatcatgaacaagaca

a score=31893
s chr3           127775727 2017 + 160039680 CCATATCACCTAAAGAAATAGAAGCAG-TTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGT---GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGA------AGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCA-TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTA-----CCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggg-aaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaat---gggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaaca-gattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaa
s HiC_scaffold_1 122040671 1899 + 233722169 CTAGATcacaaaaagaattagaaaaaggtTATTATTAAT-----AAGGAGAATAAATCAGGAATCTAAAATCTCTGGCCAAAGAAAATTCtatcaaatatttgaagaaa---tagaacCAATTCt---caaacttttccaaaatatagactaggaaaaaataagtacatt--ttgATTCTTCCTATGGAACCGGCATTACtatga-aatgaaagcaaaaaaaaaggcaTCATA---ATAAAACTATAGAACAATATTCCTTATGAATATCTGTgggaaaattctcaataaaatact-gcagTCTGAATTTACCAGCATATTGAAAACATGATACAGCTTAAACAAGTGGCATTTATTTTTGGAATTCAATGATGGTACAGCATATGAAAATCAGTCAGTGTAATGTGTCCCATTAacagaatgaaggggaaaaaatcacATGAAGATCTTACTTGAGGCAGAAAAGGCattacacaaaatgaaatactcTCTCATAATCA---------ACAGCATAGGAATTGGAAGAGAATTACCTCGACTTAATAAAATCCATACAT-GCAAAATCACAGCAAACATTACATGCACTGAGCCAGGACTGGAAACTTTTCCTCTaacatcagtaaaaaaaaaaatct--ccagtttttattt--cttttcaatatagtactagaagtttTCAAGAGagcaattag------gaaaaaaataaaaagtaccaaGATTGACAAGGAAATAGACA---------CTTTTATAGATCATACGATCTTACA-------------GAAAATTCTGGCATTTCAAATAATAcagataataaataaaca---------aagtagtAGGATACCAATTCAACACACAAAAACCAGTCGCATttgtaaacaataaaaatgaactacctacaaagaaaattacaagaataatttcatttataatat---------acGTAAGATTCactagcaaaa---gaaataatataatgaaata---gtataatgaaaactacaaa-cattgctgaca-aaattttaaaagacataagTAAATGAGAACACAGCTCATGGTCATGAATC--TAGACTTAATAATCTTAAAACATCAGCATTACCCAAAGCAATGTATAGAGT------------TGTCAAAGTTCCAATGAGGTTttatacagaaacagaaaaactcatactcaaattcatttaaaatttcaagagACCCTGAATagtcaaaacaatcttgaaaaaagACAGAG---CTAGAAGATTCGTATTTCCTGATTTTGAAACTTACTATGAAACTTCAGTAATCAACACAGCAAGGTACT------GACAAAGGCAAGCATATTAATTGAGCAAAACAGA--GCCGAGAAATAAACCTTTATATGTATAGTAACATGATTTTTGACAAGT--GTCAAGAAAATTCAATTG-----AGAAAGCTGTTTTGACAAGAGGTGCTGGGAAAAATGACTACCCactcacaaaagaataaaatcagattCTTGCCTAAtaccatatataaaaatttactcAAAATAGACCAAAGACCTAGATGTCAGacccaaaactataaaatttttagaCGAAAGCATGGGTCCAAAGCTTTACAACACTGGGTTT--GGCAATGATTTTTGAGTACAATCCCTAAGGCACaagcaacaaaggaaaaaaacaaaaaatacagagactca--gaaattttaaaact--tgcacATCTAAAGACAATATCAATAGAGTAAAAGGGCAATGCACgtaattaagaaaatatacataa--atcataCATCTGATGAGGAACCGGCATTGAGAACTCCTTAA-AACTCA-----GTTGCC--------ataaaacaatccaaataaaATCCTGGACAAGGACTTGCATAGATATTCATCCAAAGAGGACAGACTACTGACCAGAAAGCACggaaaaagatgttcaacattgTTAATCACTAGGGAAACGCAGGGCAAAGCCATAATGAGACACCATAATACACTTATTATGATGGTCACtgttaaaaa

a score=36125
s chr3           127775728 1763 + 160039680 CATATCACCTAAAGAAATAGAAGCAG------------TTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAA-TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAA----GATCAGGAATTC------------------------------------------------------------------------------------------------------------------------------AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcga---tccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatct
s HiC_scaffold_1  55056237 1630 + 233722169 CATATCGcttaccaaaaccaaaccaagaagACTTAGTCTTCTAACTAAACTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAAC--TTTAATGAAACTAAAAGGAAGAGAGGACCCA-CAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaaca--aatcaacaaatcatcaaaaagatt----------------------acat--------------GCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaacata--atagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTGTGGGGCAAGCTG---ATTACCACACAGGGAGAC-TGAGTCGGCACTCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattct

a score=25050
s chr3           127775737 1474 + 160039680 TAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCA----AAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACC---------------------------------------ACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAG--AAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCG-GTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAA-Taatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgcca--gacct-aaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaaga
s HiC_scaffold_1 171641975 1373 + 233722169 TGAATAAAGCTGatcagtaataaaaatttttccattaaaGTAGAGTTTAGGACTTGATGACCTCACAACtgaattcta-aaaatattaattttaaaaagtactagtACCAATTTTTCTCAACATAT---AAAAAATGCaaaggggaaa-attttttcaaACTTATTTTATGTGACCAGCATTACTCTGACATTAAAGCTtgacaagaaaaaggaaaggaagggaaaggagaggaggggaaagaaggtaggaaggaaaagaaaagactggGGGCCAATATTACTGGTAAATATAGA-GCTAAAATACTCAGCAAAAT--------ACCAAATTCATCAGGACATTAAAAGATGCACTTACCACAATGGGATGGGTTTCATTCCAGTAATGCA-----------ACATACACAAAATAGTAAATATGAAACAGCACATTAACAAACTGAACGACAAAAACCATATGGTCATCTC---AAATCCAGGGAAAAAGCATTTGAGAAAATTCAACATTCTTTTATGattaaaagtttcaaaaaattAGGAATAGAAGGAATGCagctcaaaataataaaggctgTATATGAAAAGACTACCATTCACATCACAGTCAACAGAGAAAAGTTGAAAACTTTTCCTCTAAGATCTAGGGCATGAGGAGAACACTTATACTCACCATGTCTATTCAACACAATATTGGAAATCCTAGAAAGAACAAGTAGGCAACAGACAGGAAGAAAATGTAtctaaagcagaaagaaagaaactagattGCCCCTATTTGCATATTACCTCATCTTATATGCAGAAAACAGTAAACACTCCATTAAAAAACTGCCAAGACTAgtaaaaaatttttcattaagttgcaggatataaaatcagcatTAAAAA---AATGACTACTGTATATGC------Taatc----------agaaattaagaaaacaattccaaTTACCATAGCATCAAAGTACttagaaataaatt--------------caagaagGGGAGAGATTACTaaactgaaaactaaaaacaccgatgtaagaaaattaa---------------atg--------------------------------------------aaacgtCCATGTGACCCAAAGTGACCTAGAGATTCCGTGCAATGCCCA-AAAAATACCAATGATATTcttca------------taaaaatgtttaaatccaTATGAAATCAAAAAAGACCCCCAATAGC-CAGAGCAATCTAAAG--CAAAAGGAACAAAGCAGGAAGCATTTCACTATTGATCTGGAAAACCTAGTATAAAGCCATAGCAATA------GCACAGTATTAgcataaaaa-aaatacataagccAATGGACTAGAACAGatagcaaagaaataaacctaTACATTTACCGTCA--------TGGGCAAGGATGTCAGAGACATGCAATGGGAAGAATACGGTCTCTTCAGTAAATGGTACGGGGAAAACAGAATGTCCACCCACAGAAGA

a score=44186
s chr3           127775749 1961 + 160039680 AGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTT----AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCA-----------CAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATC-----------------ATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaa-----------ctgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagga-gaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatcttt--acctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaa---------------------------atcaaata---------------------acccc-----------att------aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac-cctgagattcc
s HiC_scaffold_1 159886238 1910 + 233722169 AGCAATAATTTAT-GACCCCCAactcaaaaaagtaaacaa--agatatattttattagtttaaa-----aaaaaaactttaaaggagATCTAGTGcc---tctatatagaagaccttCAAACGctttaatgaaatcaaag-ggAAG-----------CAGTCATTCacagaagcaagcattaccctgattccaaaaccagaaaaggacccaaccaaaaaggaaatctACAGTCCAATTCTTCA-atgaaaatagaagcaaaaatcctcaatactaTATTGGCCAACAGAACATAGCAAGTCATTAAAAAGACCCAGTAGATTTTATAGCAAGTCATCATGACCCAGTAGATTTTATTCCAGGGGTGCCAGAATGGTTCAATATATACAAAT-CAGTAGTGTAATGCTCCATACAACCAGCAGcaggaacaaaaatcacatgatcatctcaacagatgcagaaaaaaccttcaacaaaatccaacatccattcataataaaaagcaTGAAGAAAACAGCTAAAGAAGGCATGtatctcaaactgataaaagccatctatgagaa------agCACACATCCTATTAAATGGAAAGAAGCTAAaatctttccctctaaaattGGGAACAAGATGAGGATGTCTGCTATCACC--ACTCATTCAA-ATAGT-CTCAAAACATTAGTTAGAGCaattaggaaagagaaagaaataaaaggaata-----tggatgggaagaagttaaattattattttttgtagacGACATggtcctctacatagaagaccctaaaaactc-aCTAAAGtgctcctagaattaataaccaaattcagtagtataacaggatacaaagccaacactcaaaagtcaatagcattgctgtacgccaataataaactcaccaaaagaaaaactagagaaataataccttttacaatagcatcaagaaaaatgaaatactcagcaATTAACccaaccaaggaagtgaaagatctctacaatgaagACTTTAGAAACTTGGAAAAGTAGATCAAAGAGGACctaaaaaaat-------------atactgaaaaaaaagaaagagc----tttcaaaaaaa-----------aaaagaaa--------------------------gagctttca---------------gaactagagaaaataatccttaaattcatatggaaccagaagagacctagaatagcaaaagcaattctgggcaacaagggcaaagCAA-------GAGCACCACGATCCTGGACTTCAAACTAAACGACAAAGctgcagtgattaaaaaaaaaaaaacccagcatggtatt--taaaaaaaaataaaaatagacttaTGGAACATAATGAAACAACT-----TCAGGCcactca------gctaccttatttttgacaa--------------------agaggaaaaggagcCTTAT-ATCAAAAGGCTCTGGGAAAAGTGGCTACCCACATGATAAGGGTTGAAACTACACCCTTAACtcccaccatgcactaaactaaaattaaaatagatcaaaggtctaaataatagaacagaaacaat----ctgctggaagacaaaaacagataaaattcttgaagacacagacataggcaaagattttctgaacagaGCCCTGGTTacataagaaataataccaaaaatcaacaaatgggatcacatcaag-tTAAAAGCTTCTGAGCAGCAAAGga-------aacacagtgaagagacaacccacagaataggaaaaaattttgcAAGCGAGTCT---CCAGACAAAGGGTTAATGTCTAGAATAtagtaagaatgaaaaaaaaatggtcccggggatttagctcggaggcataagcacctggtatcaaacatacgcacacacacacaaatggacCTCCCCAAACTTAGATTTAatcaaaaaaatgggcatctgagaagaatagaCGCTGctcagataaagaagtataaatgccaaaaaaatat---gaaaaatgttccacattgctggtcattaaagaaatgcaaattaactcAATGCCTGGTGTTCC

a score=24765
s chr3           127775756 1273 + 160039680 ATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAAT---AGAAGTAGAA--------GGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAAT-TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaa
s HiC_scaffold_1   9839697 1163 + 233722169 ATTCATGGCCATACAAC---AAAAGTTCCAAAATCAG----GTTCACCACTGAAATCCATAAGGACTGTAGGGAAGATCTGATGCCAAAATGcctcaaacactttaatgaaaattaaagagcAGGAATATTTCAGGAATATTGCCAGATTCATTCTTGGAGGCTAGCATTGCTTTGattccaaaacaagacaaaaactaaactaaaa-ataaatctacaaacgGTTCTCTTTAACGGACTTACATACAGAGATTCTCAAGAAGAT-ATGGCATGTAGAATGAAACACATCCTTTAAAAGATCATACATCTTGGCCAAGTAAGCATCGTCCCAGTGATGTGAAGATAGTTCAACAGATACAAATCAATACATGAAATATGTCACACAAATAGGT--AAGGAccaaaatcacataatcatctcaatgaACCCAGGAAAAG--TTTGACAGAATCCAACATCCATTCCTGACGAGAGTCTTGATGAAATTAGGCATAGCATGACTTTCTCTCAAACA-GATAAAAACTGTTTAAGATAAAATTACTGTCAACATTATCTCAAATGTGGACAAACTAG------CTTTTCTTGTATCAGAAACAAGGCAAGAATGTCTACTGTTATCACATCTGTTTAATACAGTATTCAGAATtgtagccagagcaatcagataaaattaaaaaatcaaaaggacaTATATAGAAAA----GAATCTAAATTATCTTTGTTTGCAAATTACATAATCCTTTacatagaaaagcaaaaagtttCCACCAGAAGTTTTCTAGAGCTAATAATCAGT---------GTAGC-----------------------------------------------------------------AGGAAATTATTAAAGTATCA------TGAATAATAATGCACAAATTTAATTAT-TAGGAATTAActtaacaaaggaagtgaaaaatgT------------CTACAGAGCTTTGAAAATGAAGCACAAACACAGCATTAGAATATGGAAAGATATATCCTGTTCTTGGATAGCCAAGACCAATACTGTCAAAATAGCCACACATCCAAAATGTATGTATAGATTCAataaaattccaatcaaaataccaaaagcattcttcacagaatc-----aaactatcctaaaatttaaatggagTAAGAAGAAAcgcagaatagtaaaagcaatcccAGATAACAACAGCAAATCAAGAGGCGTCACAATCCTACAGTTCagattatattacaaaactacaaTGATtaaaa

a score=27017
s chr3           127775759 1946 + 160039680 AATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAG--AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAG----ATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGT--------AAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG-ATACAAATTGGAAA-AGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAAC---TCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaact---tcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatc-aaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaa-agtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacc-cagaaatgaacccacacacc-tatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttg------tactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaa---ctgaacaaagaattctcacctgaggaataccgaatggcagagaagcact--tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
s HiC_scaffold_1  56820437 1808 + 233722169 AAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaa-ataggaaaatctcCCTACTTC----TATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaaga----agctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActcactattaaaaaaaaaaaaaactagaagctTTTTCTCCAA----------------------------------TGACTGTTTTAATACAATTTTAGAAGTTCCAGCCTGGTTAACTag-caagaagacaaaacaaaaagacatctaaattagaaataatggaagaaaaattatCTCTATTAGCAAATGATGCAGTTTTACATGTACAAAACTTCAAAGCTTTCACAAGAAACCTA--AGAACTGGTAAATGAATTCAGC-AGTTCACAGGATATAAAGTAAACATGTTAA--AAATCAGCTGTATTACTGTACACTAACAAAGgataatctgaaaaaaataata-tgacaCAAT-TCATTTAGGgtagcatcaaaaagaataaaatactt--------------------aggtgAAAGACTTATGTGATAAAAAACAGGCAAAATTgttgaa-----aaattaaagagaaagtaaataaatggaaaga-catccatgttcatggattggaagattTAATATTGCTAAAATGCTAGTGTTACT-AAAGTTAGGTACTAGTTTAAAGTAttccttattaaaaattttaa---aatgccaatgagaaactgaaaaatccaTCCCAGAATTCATCTGGAATCTCAAAGCACCTAAGCAGACAAagtaatattgaaaaagaaaaacaaa------gagatttcACATTTACTGCCTTCAAAACTGACTGTAAAACTCCAGAAACCAAAACGGGTTGTTATCgggactcacacacaca-------cagtggaataAGATAGGAACCCATAGAAAAGCATTCATGTACTGTACAGTTAACTTACTTTAgataaaaggg-------------------gaaaggaaactATGTCAGCAAATGTTGCTGGGAAAACTGATCAT--TCACCTACAAAACGACAAATTG------ACCTGTCACCTTACAACACTGCAACAATTaattcaaaatagataaaaaaaatctaaatgcaacagataaaactacattttttataataaaataaggtGAGAAAACTTCATGAGTTTGG------------ATT-----------TGGCAATGATTTATTTCCTACGATGTCAAAatcacacaagagaaaaatttactACATCAAACTTAGCAATCTCTGCACATTAAAGGGTGCTATC-ATCAGACTAAACATGCAAccacaaaatagaagaaaatatttgcaaatt----gtcTAGTAAGGGATGAACATCTAGAATGTA----------AAATCGCTAcaactcaaaacaaaagaaaacccaagTTAAAGATGGG---CAGAGtgcttgaatagacatttct----taaaGAAGACAGACTAGAGGTCAGTTATCAATGAGAAGATCCTAGATGTTGCTAATCATTAAGGGAATACAAATCCTGACCACCATGAG

a score=46448
s chr3           127775768 2322 + 160039680 CCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATAC--CTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAA-TTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttct---ctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggc-----------------------------------ttgtg--------------------------------------------------ctgtaagat-------------------------------------------------------------------------cgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccac-caacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggc-tcagaactgaaca--aagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaa----------------------ctggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaa----------gatgccccaacaggtaagaaggacacatgct-------------ccactatgtt--------------catagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaattt
s HiC_scaffold_1 219753676 2352 + 233722169 CCTACTAAGGAAATCCTGG--TCTGATGGATTAACTGCTAAGTTCcacaagaacttcagggaagaccTAAAGATAATATTCCTGAAACtcgttaataaaattaaaaggaaaaacattc----cAAGTCTTTTCTAAGAGCtggcattaccctgattccaaaaccacaCAAGGAGcccaccaaaaaagagaact---ggtCAATCTCTTTAAcgaatataaaaacagaaattttctacaagatgctggcaaacagaatggaaaaat-caccaaaaagatcatataccatgatgAATTAGacttcatctcagggatgcaagAGTAGCTCAACATATGCACATTAATAAATATAATCTACcacataaataga-------ataaaaatcagatgatcatttcaatagatgcagagaaagtctctgacaaaatccaacatccattcagaattaaaaccctgaagaaaata----tacaaaagcaATGTGGCAcgatctgataaaagcca-ctaTGACAAAATTGCTGccaacaaaatattaaatggagaaaCACTAAAAGTTTTCCTTCTAAAGTCAGGAAC---ACAAAGATACC-ATAATCAACACTCCTGTTTAATGTAGTCCTTGAGACAACAGCCAGAGCAAttggtaaaaagaaagaaataaaagagacatgaataggaaatgaagaagtca-----tTATCATTTGCAGAGAAAATGATTCTTTACTTACAagactaaaaaaaattataccaaaaTACTCATAGAATTATGAGACAAAGTCAGCAATGTAGCAAGATATAAGATCAATACACAAATATCAACAGCATTTCTGTATATCAATAATAAACTAACCAATAATGAAATTACGAAAACAATGCTATTCACAACAGCATCAGGAAAACTTAAATACTT---AATTATTCTCATGAAGGAA-TCAAAGACCTTTACAAcacaaattttatcattttgaaaaagCGGACTgaaaaagacatcagaaaatggaaagatgttccaTGTTTCTGGATAAggagaaccaatatagtcaaaatagcagtgttttcaaaactgatatacagatttaatgaaattctaaTCGAAATAGCACCAGCACACTTCACAGattgagaa--aacaatccaaacagtCACCTGGAATCA-AAAAGACCTATAAAAGCAA-------------------------------------CAGCA------ACCTTAAG------------------------------------------------------TAAGAAGAGCAAAGAAAGAAGGATCAA---CCTGATTTCAa-------------gtttatttgatctttgacaaatgggccaAAA-TATGCACTGGAGGACAGAGaagatctttaataaatggtgcggggaaaactggatatccgtGTGCAAAAGA--------CAGTTCAGACCTATATACCTCATGTGCTACGATAGaaacaaaatggatgaaagaGTTCAACGT-----TAGAAATACTTAAGCTGCTGAAAGATAAG--AGGTAAAACTGTTGAAGACACAG--AAAAGCAAGGATTTCCTGAACAGAACCCCGGTGGCACTAGAAATAAAACATCTCGTCTGACACAATGgaattgtattaattttaaaatcttctgcacagcaaaggaaacaactaaaCGAGACAACCTACAGGATGGGGaaaaaagatgaaacagaaaaaactctttaaaaaacatacatgtagacaaggactttctgaacaaaattccaggaatcaacaaatggaatcatatcaaatttaacaacttctacacagcaaaggaaacatttCAC-ATATGAACAGACAACTTAATAGAATAAGAAACAGTTTTTCCCAGCTATCTCTTacacaaaggactaatatttaga----ataaagaactcaaaatagctAAATTCTCCAAATAAAAGA--TTCAATAAAAAACAGGCCAGTGGAAATAAATCataacacttctca---gaagtata---gATGTCCAAGAAtacctgaaaaaaatgtttaccatcactggccattagagaaatgcaactgaaacaacacttgagattctattttattccagaaagaatggccatcatcaaacAATCACATAACAACAAATGCTTGCCAGGTTGTGGGAAAAGA--AACCCTCCTATATTATTCATGGGAATGTGAACTAGTTCaactactatgaaaatcagtatggagagtctttgaaaaaaaaaaaaaaaaaaaaaaaaaacccgaaacTACAAATTCCACTAGATCCATCTATTCCCCTTGCAGACAT-TTTCCTGAGTTAAATCAACTAtacacaaacataaaataaaaacaaattttaaaaaagtgaaactcATCATGTTGAATTACAGTGAAACTCAAGAGCATAATTT---ATAGCTGAATCTTAGAAACAGCttgtatgttcatcaacagatgaatggat------aatgtaTT---TATGCACAATGCAGTATTACTCaagcacaaaaaagaataaactt

a score=60892
s chr3           127775771 2374 + 160039680 ACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTA-------------ATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAAC--TCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGT-CACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaa---attaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaa-----ttccaactcaattcttcaacgaattggaaggagcaatttgc--aaatttgtctggaataacaaaaaacctaggatagcaaaa--agtcttctcaagg--ataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctat-ggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaa-----ggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaagg------------------------atct-ttacctatcctaaatcagataggggactaatatc--------caacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaa-----------------------------------------------------------------------attcaggtgac----------------------------------------------------------------------------------------------------------------------------------agcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaact---------------------------------------------------ggacatagtactaccg-gaggatccagc-----------aatacctctcctgggcatatat-----------------------ccaga--------------------------------------agatgccccaacaggtaagaag-------------------------------------------gacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1  63088748 2749 + 233722169 acaacaaaaagCCTgagtcctgatggatttacaacTGAATTCTG----------GGAGAAGat-taatgccagtactcctcagacttgttaatgaagttgaaagggaagcaattttctgCAACTCATTCCTGGATGCC--------tctgaaaccaaaaccaaagaaagacacaaccaaaaaagagaattacaggctggtctccctcatgaacatagatttaaaaatcctcaataagatactagcaaa--aaatgcagcaaatcatcaagaagattatacaccacaaccaagtgggattcac-ccagGAATGCAGCAATGgttcacatacacacatacacatacgcaaatcaataaacataatacatcatgtcaacagagccaaagaaaaaaatcacacaatcatctcaataggtgcagcaaaagcttttgataaagtacaacaggcattcatgattaaaaaccctacagaaaattggaatggatgggTT-TATCATAATCTAATAAAAACCTtctttgacaaaccaacagccaatatcacactaaatgggcaaaaactgaaagctttcactctaaaatcaggaacaagacaaggatgtccactgtcaccactcctattcagtaccgatctggaaatattagccagagcaattagacaa-agaaggaaataaaagaaataaagatagggatggaagaagttaaactatcattatttgcagatgacataatacccTTCATAGAataccccaaaa-ctccaccaaaatattC-TACAATTCATAAACAAATTCTTTAGCATGGCTGAATTCAAAATCAACGCTCAAACA--TCAGTAGCCTTCCTGTATACAAAAAACAAGCTCACTGAGCAAGAAATCAGGGAAACCACACCATttacaatagcacccaaaaaatcCAGCAGAT-TAGGAATTAATCTGACAAAGGAAGTTAatgatctatacattgaaaattacagcactctaaaaaaaaaaaagattgataaagttaccaaaaaatggaaagatattccttgctcatggataggaagaataaacatttaaaaaaaggctatactctcaaaaattttatatagatttaatgcaatctcattCAAAAAATACCTTTAACATACTTc-----caaatctagagaaaaatcttcctaaaattcacttggaaacagaagagacctggaatagcaaaggcaatcaatccggggcaacaaaggcaaggcagacagcaccacaatccctgacttgaaattatgctgcaaagttactgtgataaagttggtatggtactgacaaaaaaacagacctgaggatcaaaggagcagattagaagatgcggACCCAA--TTACAAAGTTATcagtcaccttatttttgataaacgGACAAAAAATGTTCacttgaagaaaaatattcactttaataaatggtgctggaaaaactggctttccacatcctgaagactaaaactagattcatatctatcaccatgcactaaactatagTCAaat-------ggtcaaagatctaaatattaaaacagaaacattaaacctactggaagacaagatag----aaatcttgaagacataggggtaggcagagagttcaaggacaaaaaccaaactgcatgtgAAGTACTTCTcaaaatcaacaattgggatttcatcttattaaaaagttt-tgtacctcaaaagaaatcaccaacagagtgaaaataaaacacacagaatggtaaaaaaaaaaaaaaaaagtttagcaaACTATCTGTCACATTCTCCAAATTCAATG------TTCTATCTCTCTAGGTagtacatataaagaattgaaaacactcAGCCCCCG-AAGTCAAA-GACCCAgaccaaaaataggcatctgagatgaatatacacttctcaaatgaagaaatacaaatggcaaataaatatatgaaaaaatgt--aacatcattagtcattttagaaatgcaaattaaaatagtattGAAATTCTGTTTCATCCCAGTAAGAAAGGCTTTCTTCAAGAAATCTGTactatcttatttgattttattatgcctggtggaatgggcaattcttttgacgCTAATAAGGggcattatggtggccattgttgatgtatttgtattttgttttgaagtcatccttctattttgattgactccattctcttttgtttcattggttttattctcttcaaaagaaaaataagaaaaagaaagaaagaaatcaaccattaacaaatgctggaggagctatgaggaaaaaggagcccttctctactgctggtgggagtatagattgATACAAcca-tgtggaaatcagtgtggcaattcctcaaaaaattaggtttagaggttccattcaatccttctgggtattttcctaagTGAATTAAGAACATTGTACTggggcggggatttagctcaggggcataaatgactgtctggcaagcatatggttgtgagtttgattctcagtaccaaaacacatgtgtacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagagagagagagagacattgtaccacagtgatatatgtgcacccatgtttatagcagca----caataatagctaaatcttagaaacaacccagatgcctatcaattgaggaatggatttaaaagatgtggtatttttatataatggagtgctgttcaactataaagaaggataaatttaaagcttttataggtaaatggatgcaactggaatctatcttcataagtgagataa

a score=26692
s chr3           127775817 1030 + 160039680 AGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAA-GGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCC--CATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagatt
s HiC_scaffold_1   2142831  947 + 233722169 agaaatttagagaagatctaacaccaTCACTCttcagactctttaatgaaattgaaagaaaacaatactc--ccCTAGTCATTCC-TAGGACCAAGATTCCCCTGATATCAAATATAGAGAAggatccaatcaaaaaaaaaaa----------------------aaaaaaaaaaaaaaaa-----aaaaaaa-------------aagccacacacCTAT-AGGTCAATT-----TCCtgatgaa-------------catagacacaaagatggttcaacatatgaaagtcaataaatgtaatacaccatatcaacacaACCAAGGGCAAAAACAACATGATCATTTCAGTAGACACAGGAAAAGCATTTGACCAAGtctaacacccattcatgataaaaattctgaagataattggaatagatggtctttttttttcaacCTGATGAAGTCTATCTGtggcaaaccaacagctaacatcatactaaattgtCAGAATCAGAAaactttcactctgaaatcaaggacaagataaagatgtccactgtcatgACTTCAATTTGCTAAATTTCTAgcaatactagccagagtaattaaacaagagaaagaaataaaagggatataggtaggaaatgaagaagttaacttataattatttgtggatgacatgtta--ctctacaAGAAGATTCAAAAACTCTAC---------TCTAGATCTATTAATCAATTTCAGTCATATAGCTGAGAACaaaattaacactcaaaaatcaacaacatTCTTGTAGATAAATAACAAGCTCact--gaaaaaaactaaagaaaccaTACATTTCACAACAG-CATA---AAAATGCAATAGTTAGAaattaatctaatgaaggaagtaaaa------tatattgaaaactacagtactctaaaaccagaaatcaaagaggatatgagaaactgaaacgatatcct-tgttcttgggtaggaagaacaaatatagtgaaagtggacatactttcaaaattattaaacaaact

a score=39309
s chr3           127775822 2323 + 160039680 TTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATC--CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAT-aatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaagg--ataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg------------tatagagacagacaagta-----------------------------------------------------gaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctg---aacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga------cctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacaggtaagaaggacac-atgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtac----------------atctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1  71824309 2150 + 233722169 TTTATAGACAATATAATGCTACAGGTTCTAAAACTctttaacaaaattataaaagatgCAATACTCTCAAATTCACTTCTAGAGACAAATATTATCATGATATCAATACCAGGAAGAGAtctacaaccaaaaaagagatcTACAGGCCAATGCTCCtaatgaacatcaatgcaaaattcctcaataaaatactagc-aaacaaatgcagcaaatcatctgGAAGACTACACACCATGACAATGAAGGATTCATTCCAGAGATACAGGGCTGGTTCAGCATATGCATATTGGTAAATACAAAGAACCATATTAACAGACTCAAGGACAAAATGtaacacgatcatctcaatagatacagaaaaatca-tCACCAAAGACCAAGAttgattcatgataaaaatgctaTGGAACactggaacagatggtctttatctcagtctgataaaagccatctatgacaaaccaacagtcaacaccATACTAAATTTC-AAAGCcagaaagctttcactccaaaactaggcacaaaacaaggacatCCA-TTACAACTGAACTTATTGAAAtggttctggaaactttagcaagaggattgaaacaaaagaaagaaataaaaggaacaaggacAGTAAAGGAAAGggttaaatgatcattatttgtggatgatcTACTTCTCTACATAGAAAATACCCAAAACTATATCACACCATtggtagatttaataaccaaattcagttga-TGACAGTATATAAGGGTAACAATGAAAAATCATTGGTTTTCCAGTGCATAAATAACCAATTAACAGATAGA-AAATTATAGacataacacctttcacaatagcagcCCCTCAAAATGAACTATATAG----Gactcaatctaacaaagtaaaatatttttacattgaaaactt---gTATTTGAAAAATGAGATCAAAGTGGATTTTAGAAAATGG--AGATACCCATTTTTCTTGGGTAGGAAG--TCAGTACAGTGAAAATTGTCAGGCTTCTAAAATTGCTATGCTGTTTtgatgcaattctgatcaaaatatcagtaccatatctcaaagaattatagaaaacaattctaaaatatattcagAACTAAAACAGACC----------AAAAG------CAATGCTGTAAAGGTAAATCGGACTGCATCATGATCCCTGACTAAA------ATTACAcaatggtactggcaaaaagaagaagaaaaaggaggaggaggagaaatacaaacaaacaaacaacaacaacaacaaaaaaaaaccaagcaaataaaaaatgcaaCTGAGGACTGAGGATTAATGAAactgattagaagatgtagaaacaactccagacagaGTTAGTCAACATATCTTCAACAAAAGAGCCAAACACgatcactgaaagaaagacagattCTCTAATGAGTGGTGCTGGCAAAACTAGTTTTCCATATTCTGAAGGTT------------AAAACTTTCACCTTGCACTCAGCTACAATTTAAGTGGGTCAA----------ATACATACAGAAATCTTACATTTGCTGGAAGATAGAAGAGGTAGAACTCTTTAAAACAGAGGTGtatgcaaagactttatgaaaaaaaaaaaaacaatcacacaaaaaacatcacaaagaattaagaattgagatctcatcttaataaaact------gttttacacagcaaaagaaagcaccaacGGGGTGAAGAGACAACTCATGGTGTGTGAAAGAGT-TTTGCTCAGTCTTCTTCACACAGAGGACTAGCATCAAGaatgtaaaatgaatt-----------------------------------ttaaaaagcagaactcccaaataaataaa-----ttca------------------------------gtgcaAAAATGT---------------GTACGAGAAATG-------------------------------------------AGACT----------------------------------------------------------TTCACCATTGTTGGTAGGAACacagactagtgcaacca--ctgaaAATCTgcgtagagattcctcaaaaacctaaaactagaaattccatttgatccatcCATGCCACTTCTTGGCACTTTtgctaaaga-------------aataaaagcactaCGCAGATCTATTTTTATAGTAGCATAGTTTGTACtacataaatcttggaaacaacccaaatgaccatCAGTGGGCGAATTTATAAAGAacttgttgagctctttttttttttttttttttgatagtgaagtactactctgc-attaagaaggataaactggagacatttctagtcaaacggatgcaccttgaaaccacacttttaaattagataa

a score=7536
s chr3           127775840 297 + 160039680 CCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA
s HiC_scaffold_1  33701889 284 + 233722169 CCAATCCTTGTCAACATCTTTCAAACCACTAATTTGTCAGGAACactttcattcttattttataaagccatcattatcctgataccaaagtCA--GAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAATATTA------------GCAAATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATGCCAATAAGTAAATATGAAATGTCACATCAGCAGA

a score=9745
s chr3           127775851 371 + 160039680 CAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACC--ACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTT
s HiC_scaffold_1 185532517 331 + 233722169 CACACTATTTC------TGTAAGTAGGAG-----CCTTCCAACTCATTT-acaaagc--------------taaataaacctgACAAAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAACTG--------------GGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATTTCATAGAAAAATCt

a score=6449
s chr3           127775891 318 + 160039680 AACTCATTTTATGA----AGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTC
s HiC_scaffold_1 159471395 289 + 233722169 AACCCACTATATGAGCATAACCtctattaaa---------aaatgacaaaaacagcactctaaaa-ataaaactgcagggcaatctccctaatgaatttAGACACAAAACACTGCAA-------------AATGGA--CCCAGGATgtattaaaagaatgaaattccaTGAACAAAATGGGTTCCTTCCAGG---------ATAGTTTAATATTAGGAGATCTACTAATATAATTCATCACATCAGCAGATCAAAGGAAGAAAACCATATGGCCATCCGGGTACATAATGAAAAGacatttgttaaaaattcatCATCTTTTC

a score=15878
s chr3           127775891 713 + 160039680 AACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCAT-GATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATA------------------------CCTAAACATGAT---------AAAAGCAATCTACAGCAAACCAGTAGCCAACATC-------AAAGTAAATGGAGAGAAGC------------------------TGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTA-------TATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATAC
s HiC_scaffold_1  20135648 768 + 233722169 AACTCATTTTATGAGGCTATCATCACCTGGATTCCATTATCAGACAAGGACTTTATAAGAG--GAAAATTGCTGGCCAACGTCCTTGATAAACAGACATGCAAAA-TCCTTATTAAAATACCAGCAAACTGAATTCAGAAGCACATTCAAAAAATTATTGATCGTGATAAAATGGGATTTATCCTA--GATACAAAAATGGCTCTACATATACAAATCAACAAATG--GTACACCATATTAATGAAATGaaggataaaaatcacacaataat-taaagagatggagggaaataATTTGTCAAAATGTAACATCTTTTCACAAATAGAAACTTTCAACAATTTAAGTATAGAAGAAATGTATACCACTGAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAAAATCATCTGAGACAAGCCCACAAATGATATTATTCTCAAGTTGAAAATTTTTGCAGtaaggtcaggaacaagacaag--tgcCCACTCTTGCCATATCTATTTAACATGGAACTGGAAGTTCCAGCTACAatgattagacaagagaaaggaataaatgGCATCTTAAGTGGAAAGCATGAGATTAAATTGTTTCTGCTTACAGACAACGTGTTCTTAGAAAACTTGCATAAGAAACTTAAAGGGCTCTACCAAacaattctt-----taataaatgaattcagtataGTTGCAGGATACAAAACTAATGCAA--AAATCAGTTACATTTTCACATAC

a score=27971
s chr3           127775893 1515 + 160039680 CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGG-GACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatctt-ggcgtgactct--------aactaagga-------agtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaa---gatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaatt-ggaaggagcaatttgcaaatttgtctggaataacaaaaaaccta------ggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctt--tactacagagcaattgtga--taaaaac--tgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaactta-tagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga
s HiC_scaffold_1  72209365 1471 + 233722169 CCCATTGTTCAAAGCTAGCTTTACCCAGATACAAAAACTGGCCAAGGAtttaacaaaaattgaaaattgcCAACGAGTTTCTTTAATGAATACAGATCAAGACATCTTCAACCAGACACTCAGAGACAGACTAGAACAAATCATTAAGTAGATCATACATTATGACCAAATGAGCTTCACCTCAGTGAAGCAGAGA--attaaacatacataaatcaatacataaatCATACAACATAAAGAGAAGCAAAGATAAAACTGCCATGGTCATCTCTATTGGTGCAG-TACAGCATATTACAAAATCTGGCATTCATTcaagataaaaaccctgaatCAAATATGTATAGAATCATTTTACCTCCAACTGCTAAAAGCA---CATGAAAAATCCACTCTCAATATC-TAGTAACTAGTAAAACGTTAAAAGCATTCATACTgaaatgaggaaaagagaaaaagttcgTCACACTCACTGCCCTCATTCACTGCAACTCTGGCAACGTTATTCAGAGCTGTCCAGTAAGAGAAAGA----------ATATGTGTAGGAAA----GAAGTCA----ATCCTCATCTGCACATGACATAGAAGACTGGAAAAG---------AAAGCCCACCAGAAGACATTTAGAATt-ccaaacaaattcagcaaagtggcACAATACAACacaaac-----aaaatcaataatgttACTGTACACCAACAATCATTCTAATGAGAAAGAATTCAGGAAAACAACCCTATtc---atagctaaaaaaaa---aaaaaaccttaggaattaatctgaaaaagaaactaaaaagcaGTTTAATGAAAGTATAGTGCTATGAAAATTTTAGTACtataaaaaaaaggaatattgaaGTTGAcgttagaaaatggaaggacatccgCTGATTCTGAATAGGCAGAGTcaaaattgttaaaatggccaCACTATCAAAAATGATATATAGGTTCAatgcaactccaatcaaaataccaacagcattctttACAGCACTAGAAAGGAATAATCCTAAAATTTCATAGGAGGCCCAAAGAATCAAAACAATGCACAACAAAATGT----GCAAAGACAA------------------TATTGTTCTGGATTTCATGTTTTATACAACAAAGCAACACTGATTTAAAAACAATGACTCCTACTGACATGAAAACTGCCCTATTCACCAGTAGATTAGAACTGAGGATGCAGAAACCATCCCATGTGTCTTTAGTTATGTGATTTTTGACAAAAG-tctaaaaacaaatgctggaaaaaagacagcctctataagaaatgatgctgaaaaaaatGGTTATCCATATGCAGAATTA-GCTTACC--TCTATGCGTCTCCTGCATTACTAATATTAAA--TAAACATCTTAAAAGACAT-AGGTATAAAAAGCAACCATGGAATATACTAGAAGATATTTTGGTAAAAAA-CTTGAACAT-TAGACATAGGCAATAATATTCTAAATAGAGTCGCAAATGCACAAGAACtaata-caaaaattaacaaatgaaa

a score=5392
s chr3           127775896 340 + 160039680 ATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGA
s HiC_scaffold_1  10107615 319 + 233722169 ATTGTACAAGGTCAATATAAACATTATACCATAAAGAGATAGAAATATCATAAGAACAATAACATGTTTGCTCATATCATTT-TGAACACAGTTATAAAATT--TCAGTACACTGCCAGAAAACTGAatctaaaaacatat-aaaatgattttacaCAATGACAAAATAGAGTACAT-CCATCAATAATGAATTGGTTCAACACCTGCAAATAAAT-ATTGCAAT---TTACATCAATTAA------------AACCAGATGATAATTTCAATTGATATAGAAAAGGCATTTGATAAATTTCAATACCCTTTTATGGTGAAAATCCTTGATGACTCAAAA

a score=13182
s chr3           127775903 421 + 160039680 GAAGCCACTATTACTCT-GATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGAT---------CAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA
s HiC_scaffold_1 134234716 413 + 233722169 GAAGCTATCATTACTCTTGAttccagaaacagaaaagaacccAGTGACAAAAGCAAACttcaggccaatctctttaataaacacaga----aaaatctaCATAGACATTA--GCAAgcagaatacaacaaatcatttaa---aagatatattatgaGCAAGTAGGCTTCATTCCAAGGATAATGTGATGGTTCAGTTTATGCAAATCAGTAAAAGTAATACATGACGTAAGCATAAGTAGGGGC-AAAATCACATAGTCATCTCAATTAATGCAGAGAAAGATTTTGACAGTAGCAAACACCCATTCAGAATGAACATctgaaagaaatagatttaaaaaggaattt--------tatataaatctgataaaaaccacTTATAACTAATCGATGGCCAATATCATAGTAAAtggaaagaggcagaaaaaaa

a score=41975
s chr3           127775907 1588 + 160039680 CCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAG----GCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagac--------ctaaagctttactacagagcaattgtgataaaaactgcatggtactggt-------------atagagacagacaagtagac------------caatggaatagaa-------ttgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagat----atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttac
s HiC_scaffold_1 232195281 1587 + 233722169 ctagtattACTGTGAttccaaaaccaaagaagaatTCAACCCAAAAAGCAAATTAaaggccaatatccctaatgaatatagacacAAAAGTCTTCAAAAAGACACTGGCAAGGAGAATACAGCAAACCATTAAGAAGACTAT-------GGCCACGTAGGATTCATCCTGGGGATTCAGGGA-GTTGCAGCATACACAAGTCAGTAAGTGTAATACAGCAAAGTAAGGGCGCCAAGGACAAAACCCAGCTGACCACCTCCGTAGATGCAGAACAGGCATCTGACAAAGTCCAAGCCCcgctcatgataaaaacccaagAGAACACTGGACCTGACGGTCAGTCTCTATCTCAAAGGGATGaaa-ccatctgtgacaaaccaacaggtaACATTATATTAGAT-GATCAAAACTGAAAGATtgtattctaaaatcaggaagaagactgggatgtccactatcaccactcctattcaacacagttctggaaacactagccagagcaattaggaaagagaaatgaacaaaaggaatatggataggaaaggaaaaagttaaattatcattgtttgcagattacatgctactctacatagaagaccccaaaaacgcTATCGAAAGACTTTTAGATTAAATAACCAGTT------ACATAACTGGATAGAAAGtgagcactcaaaaatcaacagcatttctgtacacaaatatcaaattcactgag--agaaattaggaaaataatacttATCATAATAGCATTAAAAAGtgt--aatatttaggaatcaatctaacaaaggaaataaatgatcttcatattaaaaattacagtactctgaaaacgGAAATTAACAAGGATATGacaaaatggagagatatccattgctcttgagtaggaagaaccaacatagtgaaaatgatcatactttcaaaattattatacagatttaatacaattccaatcaaaataccactagcatacttc-----cctagagaaaacatttctaaaatttatttag------agaagacctagaataacaaaaacaatt-tgaataacaaaggcaagg-tagaggCATCACAAAGCCTGACTTCCTGATTTGAAAGTATATTACAGAGTTCACATGATAAAAACAGTACGGtacttgcaaaacaaaacaaaacagaaccgaacaaaaaaacaaacctaagGCTCATTGGAACACAAACAGCTCCAGAAGATGcggaaacaactccaaacacattcagccactt-atctttgac---------aaacatgttcactagaagaaagacagcctctttaataaatggtgctagaaacaCTGAAttgccacatgctgaagactaaaactggatCT-TGTCTTTTGCCAGgcactaaagtaaaatcaaaatgcatcaaagatctacgtattgaaacagaaacactcaacCTCCTGGAAGGGCGActaggcagaactcttgaagcTACTGATTGGTGTAGACAAAGATTTTATG-GCAAACCCCCAATCACACAGGAGCTATCACCATCAATCAATGCCTGGG-CTTCACCAtagtaaaaagcttttgcacagcaagagaaaccaccaa-gtGACGAGACAGC--CCCACAATGTGGGAACAAACTTTTGC

a score=36257
s chr3           127775919 2279 + 160039680 TGATACCTAAACCACAGAA-AGATCCAACAAAGATAGA--GAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT---CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcaga-agatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaa----------------tctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaac--ttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatc-gatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaac------------agcaat-------------------------------------ggcttgtgctgt-----aagatcgagaattg--acaaatgggacct----------aat-------gaaactccaaagtttctgcaagg--------------caaaagacac----------------------------------------------cgtcaataagacaaaaaga-----------------------ccaccaacagatt----------gggaaagg------------------------------------atctttacc--------tatc--------------------------------------------------------------ctaaatcagataggggactaatatc--------caacatatataaagaactcaagaaggtggacttcagaaaatcaaataacc----------------------------------ccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactacc----ggaggatccagcaatacctctcctgggcatatatccagaagatgc---cccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagcca-----gaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtattcactgataagtggatattag
s HiC_scaffold_1 107509862 2501 + 233722169 TGATTCTCAAAAGACAtaataagaacaacaaaaacaaacaaaaaacgagACCAATACCTCTAGTGAACATgggtgcaaaaattctcaacaaaatactag-gaAATGAatttaatagtgtatcaaaaaGATCATCCATCATGGTCAAGCTGGTTTCATCCCAGAGGTACAAGGATAACTGAGCACACACAAGTCCAAAAATATAATAGATTACATTAAcagaatgaataataaaaatcactttattatctttatattcAATGCAGGAAAAGCATgcaacaaaattcaacatc---tcctgatAAAAAACCCTGAGCAAATTAGGTGTAATAAAATCATGCCTCAACGTG---AAGGCTTTGTATGACAAACTTA-AGCCAACAT---ATTGAATGACgtaaagttgaaaatatttcttgtacTATCAGAAACAAGAGAAGTGTGTATAGTCTCTCTACTTAtgttcaatatagtactagaag---tagcTGGAGCAAttggataataaaa----ataaaaaaaacataaataggaAAGGAGGAACTGAAATCATCCCTCTTTGCAAATGATGTG--AGTTTGTAAACAGAAACCTATGATCTCCACCAATAA-----TAGAACTGATAAAC----TCAGTAGAAAAGCAGTATAAAAAAT-------------TTAGTAGCTTATTGATAT-------GTCAACAGTTTTCTGAGAGAAACGGGAAAGCAAT-CCATTTACACTAgctacaa--aaagtaaaatattt----atgacta-aataaaggaaatgaataaCCTCCATGatgaaaattacataattttgaTGATGG--attgaagacacacacacacaaaagtaaagaTTTCTCATGTTCCTAGATGGATTGAAAGAATATTGATAAAGTGCCcctgctgcaaaaaaaaaaaaaaaaaagaaaaagtttacaaTCTCAATTTAATCCCTAGcaaaataccaatgacattcttcacaaAGCTAGgaaaaacatccta-aaattcatatggaaacacaaaagtTCC-TCATAGC-CAAAGCAGTCTTgagaaaaaaccaacaaaactagAGACATCACAGTACCTGATTCCAAAACATACTACAGAGCCATAGTAACCCCAACAATATGATTCTGGCGTA---AGAGGCATATAGGCCAATGGAACTGAATAGA--GCACAGAAACagaggaac-------------------------caagaaaaaaaaaatcac----tggagaAAGAACAGCCtcttcaacaaatgatgctgggaaaa-----tgaTATC-CATATACAGATTAAAATCTGATCCCTATCTCTTACTCTGTggaaaagtcaactcaaaatgaatcaaagacctataAGAAAGACCTGAA--ACTGAAactc-tagaagaaaatatagggatAACACTTCAAAACAATGGTATAGGTAATGATTTTCTGGATAGAACCCCCAAAACACAGGaaattgatagaattttcagcgtggaagggaaccatctgataggattttggcgtGGCTAAAAAGGGAGATATGAAATAGaagagacctttattttaagaatgtggggagagactctATGACCCTCCCAGGGTCTGGCATTATCTCcaccagacacgtggtgtgggggcatgtGGCTTAGGTTTGgagtggtgcctaaggggcattagtaatgcacaggtagcccattggtattcatttccgcgccacaggtaaattgcctaggggcgggaaaggtgacctcaGGATAGGGcctcttggttctgcctccaaggctttaccagctacagtgtcccatctggggcaaaatcctttcagaaatGAGCAAGAAATTTGGtaatattaaactaaaaaaactacaccaaaaaggaaacaatcaacagagttaacagaaaatgcacacaactggagaaaatatttgtcaattATTCAAATGACAAAAAGTTATCCAGAATATACAGCAATTCAAAATGCAATTATAAAATGGGACAATGAtctgaacagatacttctcaaataaagaaatataaatagccaACAAATACATGACAAAAGGCTCAATATCATTAGCTATCAGAGAAATTCGAATCAAAACTACATAGAGATAACATCTCACCTAAACTAGAATGGctatagttaaaaa------tattaacaaat----tcatGATGAAGAAGATAAAGGAATTCttatacattgttggtgggaatgtaaactagtatagcAACTATGGAGAACAG---------TTCTCAAATATCTAAAAGTAGCTTTATCATATAGATGATCCAAATATCTTACTTCTGGATATTTAGCCCAAGGACATAAAATCAGCATAGCAAAGAGACACCTGCACACTTATGTTTATTATGGTACTATTCACAACAGCTAATACTGTATATGGAGTCAGCCTAAttgcccatcagcagatgaac--aTAAAAAATATGTAGT-TTTATGCACAATGAAGTATT-TTCAGCCAT---AatgaatgaaattctgtcatctgCAGCAAAGTAGATTGAACCAGAGATtaatatgttaagtgaaaaaaagcaGACCCAGAAAGACAAGTACTACGTGAGCTGTTTCAtatgtggaagctag

a score=12495
s chr3           127775934 1763 + 160039680 AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTC----CAGGGATGCAG-------GGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATA---CCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT--TTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagc-aatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcat--------ggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatc---gtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagt-ggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtg-ctgtaagatcgagaattgacaaatgggacct-------aatgaaac---tccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttc-agaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgagg-aataccgaatggcagagaagcacttgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaaca
s HiC_scaffold_1 124838658 1529 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaaattt--acaaaataatggcaaatcaaattcagtttaatgttaaa---ataatacatcatgaccaaattgCATTAGCTCTGAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAATCTTG--aactttttttctattattataaaCAAAGTAAACATATCAAC--TCTTATTACTCTAATTTAACATCATATTGAAATT-----------CAATaagatgagaaaaaga-ataaaaggcatAGATActgaaaaggaacaaataaa------actATTCAGAGATTACATGATTGCTCATGTA---GACTCTGAA-------------------------------------------------------------------------------------------------------------CGGGAAAATACATTAAAg-----------------------ataaatctaataaaatat------------------------gtgCAATATTTGCATACTAAAACCTAAATATTATaggggaaataa-------aatatttaaaataaaaagaaaaatacatgcacTTGTAAATTGGAAGACTCAATGTTGTTGACATCTAAATTTTTTCCAGGTTGATCTACACAGTCAATATGAATCCAATGAAAATCCCAG--CAGGCCTTTAGTAGAGCCCAATGAACTGATgaaaaaatgtataagaaaaattgaaggaaataCAACTGCTAAAGCAATTTTTAGAAAGAGCAAAA---TTGGAGGACTTATACTCACA-----AGACATTTAC--AAGAGTTATCAGG----AAACCACATACTCAGAGAGTGATGTTATAGTG--AAACAAATGATACAATGATA---AATGGAAAACTCAGAAAC--------------------------------------AGGTCAAAATAATTTCATGGTGGCAGGGTAATCTATTATACAAATGGTACTG---CAGCAGTTTTCTATCCATATGCAACAAAATTTATCTCCATACATAAATTAAAttatacacaaaaattaattgGAAATTGATC-ATGACCTAAATGTTAAACCTGAAAGCTTAAAAATTCTGGAAGAAAACATAGAAGAGAAACCTTGTGACAGTGAG--TTAGGTAATATTTATTAGGCAGAGTA--AAAGATTTACGACtcataaatgaaaaattgttacatggaatttttttcaaaattaaacacttcTTATATTT--------------ACACTTTTAAGAAAGtgtaaatacaaaatattaactagatgaaaatattttcaaaatatatgtcaAGTA-AAGACTGCTTTTGAAAATATGTGAAAGACTTTCATATTTCAATTACAAGGAAAAGTAAGAACCCAATTTAAAACtaagcaatatattttta-aaagaagtttcaTCAAATTCAATATATTACtggaaaaaagcatttgaaacaatGCTCAACAACATTAACAACTAGAGAAATGTATGTTAAAACA

a score=9057
s chr3           127775949 667 + 160039680 AGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGG-----CCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG--CCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACT--TTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGC---AATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACA
s HiC_scaffold_1 173578727 609 + 233722169 agacagaatgtagcaaatcagtAGCCCTTAGGAACATAAATATACAAATCCTCTACAAAAGTTTAGCAACCTAAATCTCATGATAAGTAAGAAAAACAATATGTTTTAATGAAGTGGGGCTCGTCCCAGGGGTGCAACTCTGGTTCGGCATTAGAAAATCAAACAAGGC-ACCCACCCTACTAACAGACTAAAGGAGAAA----------------------CTGCAGAAAGATTCTTTAACAAAATGCAAAATCCTTTTTTGATAAGAATTATCAACAAACTAGGAAGTGAAGGGAGCTTCTTGACTTGGGCATAA-------AATC-----CCAGGCAGTGGGATCACCTTGATAGTAA-------------GGACCTACGTCCTTTCCTATGAGGG--------CGGGAGCACACTTGTCATCTCTGACCTCTAGCTGTCGTA-----------AGTCAGAAACTGAAATaggcaaggaaaagaaat-aaaggcatACGGAGtggaaaggaggaaataaagctGCTCTTACTCTTAGGTAATACGATCATTTACACAG--AAACTTCAAAGATCTACACCAAAGCAACTAGGACCGATAAGTAAGTTCAACAGGGTCTCAGGATACAGATTCAGTATAAAAACATCAATTGTGTTTCTCTATACTAGCAGTGAACA

a score=36921
s chr3           127775955 2255 + 160039680 AGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG-CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAA--------------------GCAATCCCA--------------------------------------------------------------CTAAAA----------------------------TCAGGGACTAGAC---------AAGGCTGCCCACTTTCTCCCTA---------------------------CCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACA-AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAA-CAGGCTGAGAA----AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaag-gataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaat-tgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgat-ccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaaga----tcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttca-gaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacttg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaagg-ctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacaggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtattcactgataagtggatattagccccaaacctag
s HiC_scaffold_1 123227521 2221 + 233722169 aaaactacaggacaatttatttaatgaacatagatgcagaaattcTCAATAAGAGTCTGGCAAACAGAGTGCAACAACTCATAAAAAAGATCAGAC-TTAAGACCAAGAAGTCTTTATCCCAGGAATGTATGAGTGGTTCATCATACACAAACCAATACATATAATGCACTACATAAAAAGaggcaacaacaaaaatcac---atcatctcaatagacgaaaaaaaaagtcttcaatataat-------ctgttcatgataaaattctgaaagaaaagagGTATGGAAAGGCCttatc--aatctgataaaagttattTAGTACAGACCTCCTG-CAACATCATGCTCAATGAAGGGAAACTAGCAAGGCCTGGtgctgcatgtctgtaatcccaactctcAGTAGTCTAATGCCCAAGGTTCACCGTACATTCGAGGCCGTGCTGAGTTGCCTTACTTAAAACCATTCTGAACTATGTAGCAGCTCtctgtcaaaaaataaacaaatagggGAAAACTGAAAGCTTGTCCTCAAAAACCAGAAATAAGTCCAATACTGAACTTCTGTCAGTATAGTACTTGAA--ACTACCTACAGCAATCAAGCAAGAGA--------AAAGTGATCcataataggaaaggaaaaaatc--aacTTCCCCTTCCACATA----------------AAGAATAGCCC----AACTCCACATCATGAATCCTAGAACtgataaa----ttcagcaaggtaaTAGGACACCAAATTATGTGAA--AAATCAATAGTGCTTAGATTCACCAATAGTGAGTCcatctgaagaaaacaaaaaatagaaaaacagtacCATGC-AGctagcttcaagaaaaattaaatacttaggaa-----ctaGCAAAGAAAGTGAAAG-CATATGTAACAAAAACT------------GTAAGAGGATTGAAGAGGAcattgaaaaactgaaagataactt-tgttcctggataggcagaaccaatgttTTCAAAGTGTCCATGCTACCAAAAGCAGTGTA-----TTAATACAGTTGCAATAAAAGTACTACCAACATTCTttacagaacttaaaaaa--aaatgtaaaatttatatggaaccagaagagccccagaatagcaaaaaatcaccctaggcaacaaaagcaaagcaagaggtaTAACAACCTTGGATTTTAAACtatattacaaaactacaaaaaataaaaacaacattgtACTGACATGAACACAGACATATgaaccaatggaacagaatagaggatgcagaa---aaatCAGGCACAGTCAACTATCTGATCTTtgagaaaggggccaaa--catgtattGCAGAAAAAATTGCCTCACTACAAAATGTTTCTGGGAAAACTAGCTATACATAATCAGAAGATT--GAATCTATACCATGTCTCTC-------ACTAGAGTCTA----AAAgggatcaaaaatatttaaatacaa------atactT-AATTTACTGA-GAGATGACTGGTAAAACTCTT---GACATGG--ACAGGTAAAGTCTTTCTGGACAGAATCTCAATTGC-------ATAAGAAATCCCAAAAATCAACCAATGAGA-TTGTCAGTTTTAAAAAGCTGCTGTCCAGTGAAGGAAATACCCAGAAGAATGAAGAGAC--Tctacaga-agggaaaaaatttttgcaagTTACTCCTCAGCCAGACgactaatatctaaaa-atataaagaa--aaaaatgttagaccctaccaaaataaaagaatc------aaaaagggcaattaaaatg----agaaaattttca---gaagtata---aatggccgaagtatacatgaaaaaaatgtgcaccatctctggccattagTGAACTGCAAATTAAGATaacactgagtttccatcttactccagaaagaatggtttatgatcaggaaatcaaa-aataacaaatactggcaaagctgcagagaagaaggaagccttctacattgttggtggcagtataaattagtacaaccactatgcaAACTCATATGGAACAttctcaaaaatgtaaaaataa-------ggtTGAGCCATTAAGtgtccttctaggtatcttctcaaaaca-----------gttaaagtgatatatgc------atacttgtggcagcacaattcataatagctaaatcttggaagtggcccaTGTGTC---CAACAG----ATGGACAATggaa-----------------aatggagtactactttgtta-taaaaaggaaaaatgtgagtcatttgtaagagAATGGATGCACcgtgagaccataatattaagtaaatca-------tacacacaaacttaaatattgtacattttcttatatgagaaaaccaatATATAACTTAG

a score=16758
s chr3           127775969 521 + 160039680 ATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT
s HiC_scaffold_1  45948648 466 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaaaacattagccagagctgTTAGGTAAGtggcagaaataaaaaggatttgaaTAACAAAGGGAGAAGTCAAActattcttattttcaaatgat-tgataat

a score=26525
s chr3           127776031 1060 + 160039680 ACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGA-TGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAA-ACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAA-ATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattggaaggag---caatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaa
s HiC_scaffold_1 128515420  989 + 233722169 atacattaaaata----tatattatg-tcaAACTGGTTTTACTGAAGGGAATGCAAGGATAATTCAgcatatggaaatcaataaagaTA---CAGCACATAAATAAGAGCTAAGGAtctaaatcacatgatcatctgaaTAAGTGCAAAAAAAAACCTGGACAAAATTCAGCATTCCTTCCTGA------------ATAAATAAGGTATGGAAGGATCatacctcaaaataataaaggttATAGATGACAAACTCACAACCAATAC---AGTGAGtgtggaaaaatggaaaacattccTTCAAAGATCAGG------ACAAGGCTGACTACTTTCACCACTCTGATTCAGTGTAGCACTAGATATTCCAATCAGAGCaataaggcaagagaaagaaataaaaggtacacATGGAGGAAAGTAGGAAACCAAACATTTCA-TGCTTGCAAATGATATGACTGTACACATATGAAAAGCTAAAACCTTCACCAGAAGACTTTTAGAACTCACACATGGATTCAGCAAAATAGCAGGGTATAAAATCCACATACGGAAATCAATAGCTTTTCTGTACATCAATAATGAGCTCTCTGAGAAGGAAATCAGGAGACCAGTTCCATTCACAAGAGCCA-------------------------------AACTATGAATACGAAAGAGCTCCACAACGAAAATTGTAA--CattgaagaaagaaatggaagaaagcacTAGAAGTTAGAAAGCTCTCTCATGTTAATGGATTGGGAAAATTGAAATTGCTAAAATGCCTGTACTACTCAAAGCAGTCTATAGGTTCAATGCAA-------------TGCAATGCCATTCTCACAGAACTCGGAAATAAAACAAATCCTGAGGTTCATATGGAAGCACAAATGATACTGAACATTCAAAGTAATCATGAGTAAAAACAGCAATGCTGGAGATACCACAAtatctaatttcaaaatattctatacaacaatagtaacaaaaacaCCATGATATgttcacaaaaacaaacatgtgGACTCAC-ACTCAGAATAAAAGACCTAGAA

a score=5389
s chr3           127776110 239 + 160039680 ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACA-TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
s HiC_scaffold_1  68361097 231 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT-ATGCTGGAATCATacagcaaattaaaaatagaagagaactATCTCAATGTtgacaaagaatatttttaaaaa------ggcc--tatAATACTCAAAGGTGGTATGTTGGATACTTTCCCCATAAGATCAGGTAAAAGGCA

a score=8794
s chr3           127776135 506 + 160039680 AACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACA-GCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACA-AAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACA
s HiC_scaffold_1 166844092 455 + 233722169 agtttaaagaaaaaagggaCATATTCAGTTTCTTA--------------ATTTAAGAACAGCCA--------TCATAAAAATATCTATAGAAGGATC----------------TACCTcacactgaaagaaaacatttaaatgacaAACGCAAGCCCACGTCATACTAAATGGTAAAA--CTAAAGACATTCCACCAAAAATCAGGAACATAATAAATTCATCTACACTTACCACTCCTCTTCAGTGTGGAATTAGAAGCATTAGTTAGAACaatcaagcaagagaaaaaaaataaaagggatatatgtaagtaaaaaggaaa--gaacttaAGCTATATGTAAGTGACATGGTCATTTATACAGAAGACCCAAAACACTCCACCAGAAGACCCTTACAGCTAATAAACACATTCAGCAAAGTGACAGGTCACAAAATCAATCCATAGCA-TCAACAGCACttcctggaagacagagt----------aggaaAAACTTGTGAAGACA

a score=9241
s chr3           127776144 366 + 160039680 ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATC---ACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA
s HiC_scaffold_1 169467336 310 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAAT-AGGAATAgaatgtctttatctcaatctgata---------------------------------ataTGAAAAGAAGAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAATGTATTTCTCAAgtcattagtcagagcaattaaacaagaggaagaaatacagt-----------------gaaaaaattaaattatcattatttcttacagatgacac-----tctatatag--aactccaaaa

a score=13064
s chr3           127776277 547 + 160039680 CAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGA-AGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACA-AATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatc
s HiC_scaffold_1  24910907 527 + 233722169 CAAGCCAATGGACAACATCTTATTAAAT----ATGAGCTGAATAGCTTTCCTTTGAAaaccaggaacaaaacaagaatgtccacctctccactgc------aatata---tttgaaatatcatCCACACAAATCAggcaatggaaaaa-ataaaaggtataaggataggaaaagaaacagataaattatcattatttggggATGACAGGTTCCTTTACACAGAAAACtc--aaattttcatcaaaatatttccagaatttaTACCTACATTCAGTAGAATAGCGGCATATAGGATCAAAGTACAAAAGTCAGTAGCATCCCTGTACACCACTAATGAACAAACTCAGAAAGAAACTTGGGAAATAATAGCATTCACAATAATaccatgaaaaaattaaatacttaagaattttcttaaataa-----taaaatatctctacaacaaaaactat-aatatttcaaaaaatagaacaaagaaaatgccagaaaatgaaaacatgtggCTTGTTTAATAACAGACAGAAGCAATAATAACAAAATGGCTCTC

a score=25355
s chr3           127776328 1815 + 160039680 ACTAAAATCAGGGACT------AGAC---AAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAA-CAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAAT--AAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATaatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatgggaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccc---catcaaaattccaactcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcac----catgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagac--------caatggaatagaattgaagacccagaaatgaacccacacacctatggttacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttctctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat----gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaaca-gattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaa-------aatcaaataacc--ccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcactt---gaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaaaggctaagatcaaaaattcaggtgacagcagatgctg-gcgtggatgtggagaaagaggaacactcctccattgttggtgggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaactggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaac---aggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacctagatgcccctcaacaga-----ggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaagttcctagccaaatggatggacctggagggcatcatcctgagtgaggt
s HiC_scaffold_1 225456795 1559 + 233722169 actaaaatcagtatTTTCAGGAAGATCTTAAGAGTGTCTGCTACCACCGCTCCTGTTCAATATGGTCCTAGCAACACCAGTCAGAGCAATCGGGcaagaaaaaagaactaaaaggGATTCATAGAGGAAAGGAGGAACTCAAATTCTCTTCATTCACAAATGACACAATCCCATACATAGAAGACTCTAAACACTCCACCAAAAAACTCCTTAG---AATCAACAAATGCagcaaaatagcaggatacaaaatcaaaacacaaa-aaatcaatagtgtttctgtata------------------------------------------tcttct-------------------------ttttttttttaccagtaccagggg--------------------------tcaaa-----------------------------------------------ctcatgaccatgcacttgcaaggcaggcgct-----------tatgccgctgagctaaatccccag-cccagtgt--tcCTGTATATCAgtgaacccactgag------aaagaaattagaaaaacaataccatagctt--------caaaagaaaaattacattatcTAGA------------GACAGAAGGCCT-----CACAATCCCACTTCAAGTTACATTTCAAGTTATgttacaaaactacagtgataaaagcaGCCTGG-------ACAGGGACA---AAGTAAACACACCAGGCAATGGGACAGAATCAAAGATGAAGAAACAGCCCCAGGCACACTCGGCCACCTGACCTTCCACAA-GGAGCCACAAACAGGC--TGGAGCAAAGAGCGTCCTTT-Ggcaaatggtgttggaaacactggctatccatatgcagaagaat--gaatctaGAATCATCTCTTActctgtactaaaataaaatc-agatggatcaaagacctcgatattaaaacagaaacaat----ctgctggaagataaaataggtaaaattcctAAAGACATCCTATGGCTAtgacaaggactttctgaacagaaccccaactgTGTAAGAAATAACGCCAGgaatgaacaaatggaattttatcaaattcaaaag----------------gaaataaccaacagagttaAGAGACAACCTACAGGATGGGGAAAACATCTTTGCCAACTATTCCTTAGATGGAGgactaatatataaaatatataaagaaataaaaaaattagacctcccaAAAGCTGCAATCAAAAAGCAAGCAATTGAAAA-------TCAG--CTCAAAAAAGAAGT---ACCT------------ATGACCAAtaagcatattaaaaaaaaacattcagcatctttgaccattagagaaatgtaagtcAAAACAACGCTGAGAGT----CTCACACTAGAGAGA--------------------------------ACACTGTATGAGGCTGTGAGGAAGAGGGAACCCTTCTGCCTGGTCGgcaggaatgtaaactggtataa-TACTACACAGAtgcat-----gaataaacaaataaataaaaattctatt------tgattTGG-----CTCATTCTGGGT---TTTCTTGAAGAGTGCAAGACGCTGGCTTACAGTAATACATGCATctctatgttcatagcagcacaatgcatagtagctaaatcttggtagCAGCCTCCAGGTTCATAAACATATAAAGAGAATGGATAGAGacaat---gcacacatacacaccaaagcactactcagccataaagaagggtaaatttgtgtcatttgtaagaaaatggatgcaccttgagatcataatgctaaGTAAAAT

a score=6158
s chr3           127776453 189 + 160039680 AAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAA
s HiC_scaffold_1  11724094 188 + 233722169 aagtcaAACTATTTTTATTAAGAGATAATATAATCATTTACATAAAAGACTCAAAATATTCCACCAAAAAACCCCTAGGACTAATAAGCAATCTCAACAAAGTAACAGGATAC-ACatcaacacacataaatcagCATTGTGACAGTGTATCAATAATGAATCCATtgtgaaaaaaatgaggaaaacaa

a score=3806
s chr3           127968461 81 + 160039680 CTATATTGGCCTCAGAACAAAATTGCCTAATGACACATTTCATAGAATACACTCTCATCGTTCAACAGTGCGTGGCTGTTT
s HiC_scaffold_1 223625087 81 + 233722169 CTGCAATGCTCACACAACAAAATTGCCTAGCAACACATTTTTTGGACCACATCCCCATCGTTAAGCCATGCATGACTGTCT

a score=19550
s chr3           128280634 503 + 160039680 TTTTCTGTGGAGTATTTACAGGGGTTCTGGGCACCTTTGGGAGCCTGATCTAGAGCTGAAG------------------CCTGGGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGATTTGAACCTTGGGCTTTGGTTGGCAGAGCCTAAGCCCCTTGGCCATGC---------TTCAAATCCGCTTCCCAAGCTTGAGGTGAGCTATGAAAGCCAGCTGGCTGAGTTTGCGGCTGGGGCCCTTTGGCATCTTGGGCTTGATGGCCTGAGGCTTCACAGGGACCTTGATGGCCTCTGCGCATGCACTCACTGCCTTTGTATTGCTGGCCTGCTTCTTCTCCAGGCCTTTCTTGTTGTGCTTCTTGGCAAAGCGCATGTTCTCCAGGAAC-TGAGGTCAAC--------CCTACTAAGAGATTTGTATCTTTGCGACTGGGATTTCTTGATGCCATTTATGTGCCATTTGAGACACTGGTTGTGTGTGGTGTGGTTCATGG-----------------CTGCAA-----GACTCCCACAGGCCTTGGGACCAGAAGGAAAAAAA
s HiC_scaffold_1    788093 554 + 233722169 TTTACTGGGGAGCCTTCACAGGGGCCTGGGCAACTTTTTGGAGCCTGAGCTGGAACAGAAGTTGGAGCAGCAACCTGAGCCTGGGCCTTGGTTGGAG-TCTGGCCTTTAACTAAAT-----CCCAGGCATTTGGCTGGCAAAATCTGCGACCCTTGGCAATGCAGATGAAGACATGGATACATTTCCCAAGCTTGGGGTGCGTGATATAGGCAAATTGAATGAGCTTGTGGTTCACACCCATTGGGATCTTGGGCTTGACCTCcctgggctccaggagggtctCAATAGGCTCCGCACGTGCATCCATGGCCTTGGCATTGGGGGCCTGCATTTTCTTGAAGCCCTTCTTGTTGTGCTTCTTGGAAAAATGCATATTCCTCAGGAACTTGGGATTTACGAGATATGACTCTTCAGAGAGTCATATCTTTGCAATCAGGgtttcttgatgctatttctgTGCCATTTTCAGCACTGGCTGTGCGTGGTGTGGTTCTTGGACTTGGCCATGTCTGCACTGTAAAGCACGGCTGTCAAGtgcc-tggaaccagaagaaaagaaa

a score=5105
s chr3           129450964 396 + 160039680 ACATCAGCAAATGT-CTGACATAATCCTGGAGGGCAGAGGACAGTCACTCTAAAAGACCTCTTATATAATCAAGAACCCTGCTCAACTCAAGATGCATGCAGCTGCTGCCAGCGGAACACAGCTTTGCACTGCATTG--------CTTTTTAAATAAGTAGA-AAGTGTGTTCTGAAAT--TAAT-TATAAAAATACAGTATA-----GTGAGTGTCCGGTCACATAGTGGGTCCATAAC--------------TGCACTGTACTGCAGCACAGTAGGTTTACAAGTATGTGAGTGGC-------------------ACATCACAGCCTGCTGTTA------------------------GGATGGCAAG-----AGCATCACTAGACAACAGGAATCTCTC-----CATTCTG---TGATGGGATTGTCATTGTCTGTGTGGCCTGTCGTTGGATGAACTGTCAGCATA-----CAGAACTGTAGTGA
s HiC_scaffold_1  66816154 480 + 233722169 ATACCACAGAATGTACTTACACAAACCTAGATGGTATAGGGCAACCACTCCATGTGGCCTCTTCACAAATTAACAGACCTGGTAAACTCAAGATATATGGGGCTGCTGTTGG-----TATAGCAATGTACTATTTTatggtaaatttttttaaataagtaaaggaataaactttaaaataataatggatAGTAATGCAGAATAAACACATAAA---CCAGTAACATGGTTGCTTATTatcaatattaaatattatgtactgtGCATAATTATACAAGCTATATTTTTATGT-AGTGACTGGAAGTACAGGTTTGTTTACACCAAAATTATCTGTAAAATGTATCTGTAATACTTTGTGCTGCATGACAAAGATACAGTATCACTAGATGACAGGCCTCTTTCagctacattttaattttatgagatcACCACTGGGTTTATAGGCTATTGTTGACCAGAATATCAGTATATTGTTCATAATTGTAATAA

a score=3487
s chr3           129733102 59 + 160039680 GTTTCCTTTGGAGCAAAGACATCCAGGGAGGATGCTAAGAAGGTGGAAATGACAGCCTC
s HiC_scaffold_1  67996984 59 + 233722169 GTTTCTTGTGGAGCAGAAGCGTCCAAGAAGGACGCTATCAAGGTGGAAATCACAGTTTC

a score=4667
s chr3           130017244 355 + 160039680 AGGTTGAAAAATTCTTATCTAAAATACATGGAGCCAGAAAGTTTTCAGTTTTTAAATTTTTCAGATTCTGGAATATGTATATATAAAAGATGAGGTATCTT-TAAAT-GAATCTAAAGCTAAAC-ATAGACTAACATATATTTCACATGTACCTGA--AACATGGGTCCAATAGTAATTGT---AGGCGTTTCTAGTACATCTAGGATTAACTATGTATGACCTATCATGAGAAAAGTAGAACTGTCCACT--TGAGTCATATCAGTTCTGAAAACATCTGGCTTTTGTAGTATTTAACATTCCAGATTAAGGAAACTCTATCTGTCCCTTTTCAGTGTGAAAGCTAACTTTAGATAAACAATCA
s HiC_scaffold_1  52384916 350 + 233722169 AGATTGAACATTTTTTATCTAAAACACATAGGTCTAGAAGTGTTTTAGAATTCAGATGCTATGGATCTCAGAATATTTGCAAATACAGAATGAGGTATCTCACAGATAGGACTCAAATATAAACAATTAGTTCGTTTATGTTTCAGACATTTCTGATGAAAATAGG-CTagaagtaattttataaaatatgttaagtAATTTTGTGTGTGAAGCCGTATTTCACATCGTGTGA-------ACTTTTCCACTTGTGTGTCATATC--TTATGATGTCATATCATATGTGATGTCTCAGAAGTTtaagatttttaagttttcttttttcttttttcctcttga-----tGTTCCAGATAAACAAGCA

a score=3615
s chr3           130144373 81 + 160039680 GTCATTATCACCAACTAGGGAGACAGCCTCTAAAACGAGTCTCTGGGTAACATTCCAGGTCCACATCATAGCAATCTCCTT
s HiC_scaffold_1  56554730 81 + 233722169 GTCAGTGCCACAGTCTGGGGAACAAGCCTTTAACATGAGACTTTGGTGGATATTACAGATCCACGCCATAGCAAACTCTTT

a score=5386
s chr3           130729051 94 + 160039680 CCTCGAAGTCTGCCTGGGCACACGCCACATGCAGATTTAGGTGCTTTCCCAACCTTCTTGGTGTAGAGGTAAACAATCCTGTTGCCAGGGGTTC
s HiC_scaffold_1 190031241 94 + 233722169 CCTCGCAGGCTGCCTGGGCACACAGCACATACAGAGTTTGGTGCTTTCCTGCCCTTTTTGATATAAAGGCAAACAATTCTGGTATTGGGGCTCC

a score=4021
s chr3           130757447 104 + 160039680 TTGCTTGCAGTGCAGCAGCAGCCCTGTCATCATCTCCTGTGGATGGAACAAGCTGGTCAGGGTATGGAATTTGGCTAACTGCAAGCTAAAG-------------ACCAACCACATTG
s HiC_scaffold_1  47401438 105 + 233722169 TTTCTCGCCTAACAGCAGCAACCCTATCATTGTCTCCTGTGGCTGGGACAAGCTGGTCAAGGTG------------AGCTTCAAGCTGGGGTTACAGGATCTTTACCAGCCACAGTG

a score=7594
s chr3           130757507 107 + 160039680 GGTATGGAATTTGGCTAACTGCAAGCTAAAGACCAACCACATTGGCCACACTGGCTACCTGAACACAGTGAC--TCTCTCCAGCTGGGTCCCTCTGTGCCTCTAGAGGC
s HiC_scaffold_1  47402050 109 + 233722169 GGTATGGAATTTGGCAAACTGCAAGCTGAAGACCAACCATATTGGCCATACTGGGTATCTGAACACTGTGACCGTCTCTCCCGATGGATCCCTGTGTGCTTCTGGAGGC

a score=9035
s chr3           130757617 136 + 160039680 GATGGCCAGGCTAGGCTGTGTGATCTCAAGGAAGGCAAGCACCTTTACACATTGCATGGTGGGGACATCATCGGTGCCTTGTGCTTCAGCCCCAACTGCTACTGGCTCTGTGCCAACCCCGGGGCCCCAGGATCAA
s HiC_scaffold_1  47402602 134 + 233722169 GATGGCCAGGCTATGCTGTGGGATCTCAATGAAGGCAAGCATCTTTATACATTAGATGGAGGAGACATCATCAATGCCCTGTGCTTCAGCCCTAACCGCTATTGGCTCTGTGCTGCCACT--GGCCCCAGCATCAA

a score=6703
s chr3           130891956 672 + 160039680 ATACAGAGTTGCCTCTGGTTCCTGGCTTCACTTAAAGAGTGA-TTTGACAGTGTTCCCAGTCCTTGATTT--TATAGGTCAAGGAAGAGAATGTCCTCAAATTCCCTTCAATAGAAAGCC-------------CAAACCCCTTACTTTCAGGTAGAGAAGTGTGTCTACAGAAGGGTGAATGATATATTTATACAGTGAATCAGAACTGGG--TGGGAGAAGGGCCTTTGTGAATCTCAGGCTATCGTGACCAGAAGGAAACGTGC----------ATTATCTTCTGGGACACTG--CAGTGTCTCTAGCT---CTGGCATTCAACCCTTCC-CTGGACACTTCCTTGTTTCTGACAGCTTCTGGCAGCTTTGCAGGATTCTCCTGATGTGGGTTCTTCACCCAGGACTCAACACAACCGTATTTC--AAAGCCATCTTCTGTTATAACCTGTTCACTTCTGCTTCCAGGAATCTTATCTCTCAGTTCTTCGTGGACATTTCCATCCTGTGCACAAAGGAGAGAGCTCACTCAGTAGGTGACATGGTGACATGGTGGCTGGAGGGCTGACGAAGTCCTATTGAAATGTGGCCCTCTTTCCT--------CTGTGAGATGGCACATCTGGTCTCT----------AACTGTGCAACAATCACTGCACGAGCAAAAGGAGGACCAATGTGCTATGCAAAGGGAGCACTGACCAAGAGGAGGTTTAGAG
s HiC_scaffold_1 198593178 642 + 233722169 ATAAGGCATTGTTCTTGGTTCCCACCATAATTTAAAGGGAAAGTTTCACGATGTCCGGAGACCTTGATGTCCTGCAAATGAAGGAGGAGGACATCCTCAAATTCCATGCTGCAGGAACCCACTTAGGTGGCACCAAACT--GGATTTCCAGATGGAGCAGTATATCTACAAAAGGAAAAGTGATGGGATTA-------AATCTGAAGCGAACCTGGCAGAAGCTTCTGCTGGCAGCTCGAGCCATAGTGGCCACTGAAAATCCTGCCATCAGGGTCATATCCTTTAGGAACACGGGCCAGCG-----GGCTGTGCTGAAGTTTGCCTCTGCCACTGGAGCGGCTCCTATTGCTGGCCACTTCA-----------------CCCCTG-----GGACTTTCACT---AACCAGATCCAAGCAGCTTTCCGAGAGCCA-------------------CGACTATGTAACACAGATTCTTCTCT----GCGTTATGTGGACATTGCCATCCCGTGCAACAATAAGGGAGCTCACTCAGTGGGT------CTGATGTGGATGCT---GGTCTGG-GAAGTGCTGCACATGCCTGGCACCATCTCCTGGGAACACCCATGGGAGGTCATGCCTGATTTCTCTTCTACAGGGACCCTGAAAAGATTG----------AAAAGTAAGAACAGGCTGC--TGCTGGGAAGGCAGTGACCAAGGAAGAATTTAAGG

a score=4659
s chr3           131654934 128 + 160039680 CTCAGAAAGCATGATGGAGACACGTTCCACAGACCACTGT-ACTAGGCGATTTTAACCTTATATAAACACCATAGAGCGAACTCACAGAAACTAAGATGGTTACGGTGTAACTAGGTGATCTAACTGTA
s HiC_scaffold_1    618089 129 + 233722169 CTTAGCAATGAGGATGAAGACACACTTCTCAGAAATGTGTCGTTAGGCGATTTCATCATTGTATGAATGTTACAGAGACTACTTACACAAACTGAGATGGTTACAACGTCACCAAGTGATACAATCTTA

a score=6960
s chr3           131899061 288 + 160039680 TATAAATAGATGTTCAAATT-----ATAAGCATTTCTTCGCT-----ATCTTTTTGAAGGCTTCTATTACATCTTGGTTTCTCAGACTATAGATCAAGGGGTTCAACATGGGAATAATTATGCCATAAAATACAGAA--------------GCTGCCTTT----TCTTGCTCTTGAGAGTCATTGGTATGAGGGTGTAGATACATGTAGGCGAGAGTCCCATAGAAAATGGTGACTGCAGTCAGGTGGGAAGCACATGTGGAGAAGGCCTTTTTCCTTCCTGCAGCAGAAGACATCCATCTATTCTTGTCAACAGT
s HiC_scaffold_1 168291314 316 + 233722169 TATAAACGAATTTTCATATTTCATCAGAAAATTCTCTCCTCCCCAGCATATTCTTAATAGCAGACTTTACATCCTTGTTCCTCAGACTATAGATGAGAGGATTGAGCAAGGGGATCACCACTCCATAAAAGAGGGAAATGAGAGCCTGCAGGATGTCTTGATTATCTGCCTCAGCAGTGGTTTTAGACTTGGGCTTTGCATACTTGAAGAAGAGGGTCCCATAGAATATAATCACCACCGTGAGGTGGGCTGAGCAGGTGGAGGAGGCCTTACGTTTTCCTTCAGTGGAAGGAATTCTTATGATGGTAACAACAAT

a score=7922
s chr3           131899082 248 + 160039680 TAAGCATTTCTTCGCTATC---TTTTTGAAGGCTTCTATTACATCTTGGTTTCTCAGACTATAGATCAAGGGGTTCAACATGGGAATAATTATGCCATAAAATACAGAAG---------CTGC---------CTTTTCTTGCTCTTGAGAGTCATTGGTATGAGGGTGTAGATACATGTAGGCGAGAGTCCCATAGAAAATGGTGACTGCAGTCAGGTGGGAAGCACATGTGGAGAAGGCCTTTTTCCTTCCTGCAGCAGAAGACATCC
s HiC_scaffold_1 177337456 269 + 233722169 TAGGTGTTTTTGAGCCACCAGGTTCCTCACGGCAGCCTTCACATCTttattcctcaggctgtagatgatGGGGTTCAGCATGGGGGTCACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCC

a score=7244
s chr3           131899090 259 + 160039680 TCTTCGCTATCTTTTTGAAGGCTTCTATTACATCTTGGTTTCTCAGACTATAGATCAAGGGGTTCAACATGGGAATAATTATGCCATAAAATACAGAA--------------GCTGCCTT--TTCTTGCTCTTGAGAGTCATT--GGTATGAGGGTGTAGATACATGTAGGCGAGAGTCCCATAGAAAATGGTGACTGCAGTCAGGTGGGAAGCACATGTGGAGAAGGCCTTTTTCCTTCCTGCAGCAGAAGACATCCATCTATTCTTGTCAACAGT
s HiC_scaffold_1 168341719 277 + 233722169 TCCCCAGCATATTCTTAACAGCAGACTTTACATCCTTGTTCCTCAGACTATAGATGAGAGGATTGAGCAAGGGAGTCATCACCCCATAGAAGAGGGAAATGAGAGCCTGCAGGATGTCTTGATTATCATCCTCAACAGTGATTTTAGACTTGGGCTTTGCATACATGAAGAAGAGGGTCCCATAGAATATAATCACCACCGTGAGGTGGGCTGAGCAGGTGGAGAAGGCCTTACGTTTTCCTTCAGTGGAAGGAATTCTCATGATAGTAACAACAAT

a score=4419
s chr3           131899102 202 + 160039680 TTTTGAAGGCTTCTATTACATCTTGGTTTCTCAGACTATAGATCAAGGGGTTCAACATGGGAATAATTATGCCATAAAATACAG-AAGCTGCCTTTTCTTGCTCTTGAGAGTCATTGGTATGAGGGT----GTAGATACATGTAGGCGAGAGTCCCATAGAAAATGGTGACTGCAGTCAGGTGGGAAGCACATGTGGAGAAGGCCTT
s HiC_scaffold_1 182441708 202 + 233722169 TTTTGAGAGCTCCTTTAACTTCCTGGTTCCTGAGGCTATAGATTAGTGGATTCAGCATGGGGGTGACTACTGTGTAAAAGATGGCAACCTGGCGATCCTGGTCC----AAGTTGTAGCT-TGAGGATGGCCGGAGGTACATGCGAATCACAGAGCCATACAGAAGAACCACAACTAGAAtatgggagctgcaggtggacaGAGCTTT

a score=7943
s chr3           131899107 221 + 160039680 AAGGCTTCTATTACATCTTGGTTTCTCAGACTATAGATCAAGGGGTTCAACATGGGAATAATTATGCCATAAAATACAGAAGCTGCCTTTTCTTGCTCTTGAGAGTCATTGGTATGAGGGTGTAGATACATGTAGGCGAGAGTCCCATAGAAAATGGTGACTGCAGTCAGGTGGGAAGCACATGTGGAGAAGGCCTTTTTCCTTCCTGCAGCAGAAGACAT
s HiC_scaffold_1 182364684 221 + 233722169 AAAGCATCCTTCATGTCTTTATTCCTCAAGCTATAGATGAATGGGTTTAGCATAGGAATAATCACATTATAGAGAATGGAAGCCCGACTTTCTTTCTCTGTAGAGTGAGCTGAGGGGGGGAGTAGATACACACCCATAAGTGACCCATAAAAGAGAAGAACCACCGTGAGATGAGAACCACAGGTAGAGAAAGCCTTCCACCGCCCTCCAGGAGAGGAGAT

a score=11629
s chr3           132778763 1394 + 160039680 atcccaattatctttcta---atttcatttaatgggttatttttttctcatggatttcatt-cagtttttaaatgactatttaaaatgttctttatggtgtatttcatctgtgcagg----tatgaaatcggttattaaagagtttgatgtgtgcctttataggcatggtagc---ttgagttttcatatttcctgggcttctg-tattgagat--------------------gtttttctat---------cagatgg----------atcaGACTG--------------------------------AATGCAATTCTTGTTATATTTCTAAATTGGGACTACAGTGTAGTTTCCCTGTAGCTCCTTGGGCTATGATCAATGACTCTGCGTACAGTGCAGACTGAGGTGGGATCAGAAA--CTCACTAGC-CTATAAGCCCC--ACAAGTGGGGGCATG-----AGCTCAAGCAGGTATAGTGCTGATAGCCATGGCTGCGAGGCACTCACTGTGTACTTACTC--ACACGTGGGAAGAGTGGACCCTATCAGGTGACCACAG--TTTCATCAAATGCTGTTGGTTCTAGCTGTGCAAGGTCCCCTG---CCAGCAGCCCTAGCAGTGGTAAGAAACCTAGCAAGCTTGCCCTTCAGTCTGGCAGTGACTTGGGTCCAGA--TTTCATTGGCAAAAACC----CATAGCAGTAGCCCT------GTGGTGCTCATACCCAGTCATAACTTTAGTAGACTATTAGACAAAGTATAGAGATAAT---------------AGTTTTACAGAAGGGGTGGCAA----ACAG-AAACCACTGTGCTACTCTTTGCTGGCAACAGTGCTTGTCAAGG-----------------------------CTCTTGTCTTGCCTGGTATGAGCACCCAAGTTTGGAGTGACAACTGGATCTAGGG------------GGATTTCCTTCTTTAGAA--GCAGTGTTTGCTGCTGTAGGGTAATGGTTGGGG------CTTGAGTTGTTCAGGGCCCT----GTAAACC-------AGGTGGCAGT---AGAAACTTTAGGATTACCTCTACACTTTGTCTGTAACTGCCAGTGTAGCATAGTATAGTAAATAAGTGAGAGACAACAAGAA--ACAGCTGTCCTTGGCTTTGGTCCTGCCACTAACATGAGTTCACAAAGAGCTATGCAGAACCTGGGGCTTAAAA-GCAGAGAGC----TGT--------AGTCACAGTGATACCTTCCATCCCCCTGTATGAAGGTTGTTAT-CTCCTACAGTGCAGCTCACTCATTGT-------TCAGGTG-----------------GACTTCACAAAGTGTCTGTTCGTGTCCTATTAGTCAATGCAGCATAATGTCTGTGGAGTCCCAACAATGGAAATATTTAGGAGTTTATAACTCCTAGAAGAGTTCAAAATCAGACATCAGGTCACATCTCAAGATGGTCCCTGACTGTAGCACCTTAGGTGTTGAATGTATGACATATGAGACTCTTTTTCCAAATCTA-----------AGATTTCATGTTTCT------TATGGACTACAAGCCAGTGTCCACTACAGGGCTAACTTGATGGTCATGAAT
s HiC_scaffold_1 218919330 1581 + 233722169 AttccatttacattgatagttatttCACTTATCTGATTATCTGTT-CTCTTGGATCTcactacactttttaaaaaatcagcttaAAAGTTCTTTATCAGCCATTTCCTCCTTACTGACCTCTTTGGGATCTGCTACCAGAGACTT------GTGTTCTTTGGGGCatcatattactttgttttttgatatttCTTGTGATCCTGATATTGAACTTTACATATGTGGTAGACCAAGCACTTCTCTTAATTTTTGCAGTTGGCCTTCTTAATAACAGGCTTTCACCCGAAGATGTCTTGAGTTCTTGCTTCATAATGCAATACTGGTTATATTTCCACCTAAG-----CATTATATTCTCCCTACAGCGTGTTTGGATGTAATTAATGACTTTGGGTATAGCACATATCATAGCAGAGTTGGAGAGGCTCACTGTCTCTGTCAGCCATGAAAAAGTATGGATATTCTAGCAGCTGAGGAAGGTGTGATGCAGACTGCAGTGTGTA-GGGGCACTCACTGTGTGACTGCTCCTGTAAGTGGGGC-AGTGGTCTCTATTGGATCATGAAAGCATTCCCTCAGGCACTGGGAGTCTGCTCTTAGAAACAGCTCCTAGTACTGGCTGCCACAGCAGTGATGGAGAACCTGCAGCACTTGACCTATAATCAGTTGCTGCTGTGGGCCCAGAGGCTGCACAGGGAAAAGGAGTGGCAAAGCTGCACCTTTTTTTTGGTGGCACTCACCCTCCAGC-TGACAGCAGT----TCCTGGTCAGG---TAGAGATAAGGTGAGCTGTGCCGAGAACTGCATAGGTGGGATGGCAGCATGGCAGCAAACTTTCATGTTCCTCTTTGCCAGTGGCAGTGCACACCCAGGAGCAAAACTGAGGGCAAGTCCTTCTGGGTCTCTTTAAATGACTGTTAAGAGCAAC----------ACAATGGCTGGAGCTGGAGTTTTTGTACCCAAAATCCTATTCCTTCAACTTGTGGTGTGTTCAGGGTCAAGGTGACAGATGGATGTATCCATGGAGTTGGCAAAGGCCTCCTTAGCACACCCTTAGGGATGGGGCGGTTCGAGGATCCACGGTgttctttctctgtcttgtcaGTAACTG---ATGTAGTG---------------GGAGGAGGCAGCAGAAACCACGCAGGTGCCTGTCTTCAGTC-TGGTACTGGTGTGA-CCCACAA-TAGCTAC-TGTCACCTTGGTCTCAGACTGCAAGGACCCTCCTGTCCATCTTGAGGGACAATGA---CCTCCATTTCCCTTCA----GGTTGCAACACTTCTATAGTACTGGGCATCCAGTGGGTTTAGGTCAGGTATTCTGCTGAGACGAGTTGAGTTCAAGCTGTAACTATCTAT-CCCCAT--GCTAGTGCAGTGGAAGGATTATGAAATCCTAGAGATGGGAATATGCAAGGATTTCTGACTCTTGAGGGAATCCAGTATGAGACATTAACTCGCTTTTCAAGATGGTTCCTGGCTATACCA-CttaaatgttcactggaaaatgATGCGGGTTCTTTTTCTGAAGTAAGGCTGTTGTGCAGACTTCAAGTTACTTTTCTATGTGAATTGCAAGCCAGTGAGAACTGTGAAAGAAACTTGCCAGTAACTAAT

a score=5779
s chr3           132779923 186 + 160039680 AGTCAATGCAGCATAATGTCTGTGGAGTCCCAACAATGGAAATATTTAGGAGTTTATAACTCCTAGAAGAGTTCAAAATCAGACATCAGGTCACATCTCAAGATGGTCCCTGACTGTAGCACCTTAGGTGTTGAATGTATGACATATGAGACTCTTTTTCCAAATCTA-----------AGATTTCATGTTTCTTAT
s HiC_scaffold_1 106005853 193 + 233722169 AGCCCATGCAGTGGAAAGGCTGTGAAGTCCAAGCAGTGGGAATATGCACGGGCTTCTGACCTCTAAAGATGTGCATATTCAGAAAGAAGGTCCATTCTCAAGATGGATCCTGGTTACAGCACCCTGCAGGTTAG----CTGAGACATGAACTTCGTTTTCCAAAGTCAGACTGCTATGCAGATTTCGGCTTTATTAT

a score=5977
s chr3           132792665 436 + 160039680 AGTGTTGATGATGCAGAATATGGAGAGAACTATCCCTTGGTCCCTCAGTACAAGAAGAGCAATGCTATAGTTTC--------TAATAACACCTACCATAGTTCCTGATCTATAGAAAGTGAAGACATTCTCCAGGACCTTCAGGATAAATGCAGGAGATACCTGGGCCTCTGACATCAGCAACCATTCCTTAGAGCCATATTCTTAGAGAATAGTGTAGAACTTTCTCTCTGACATCT-AGGATGAGTACAGGTCATGCTGACTTCTGTGGTAATAGTAACCTTGAACTCAACATTGTGGAACCT------AAACTCTATGATACTTAGGTCCCATGAGGCAAT--CCCCATTTGGTGCTTGGTCTCACAGCACTGTTAGCTGGTTTTATAGAGATTAGAGCCATAGCTGATGCTTTCACCAGATCCCAAAACATCAGCATAAATGGTCTCAG
s HiC_scaffold_1 142171094 425 + 233722169 AGTGGCAGTGAAGTGGGACAGGAAGA---CTGTGCCCAGATAGCTCAAGGCTAGCAGAG-------ATGGTACCAACAAGGGTAGTACCAGCAGCTGTGATTCATGAACCACAGGACGTGAAGGTCTTCTTCCAAACCCTTGGGATGAACACGGGGGCTCCCTGGGCCTGTCACAATAGCAATGTTCTAGAGGTGCCAGAT-----GACAA------AGGGCCTTTCACAGGTCCTGTGGGGACGAGCACAGATGCTGTTCAGATCTGTGGCACTGGTTGCCATGGCCTCAAGGTTTTGGAACATGAAGGGGAACTTCTTTAGACATGGAT-------GGTGATGATTACAGTTGTTGCTAGCTTTCTTAGTCCTGCCCGCAACTTCCATGTAGCTGTGGGACAAGCATGAAGCTTTCATGAGTTTCCAGATGATAAACAAAAGTGGTACTAG

a score=3640
s chr3           132909905 118 + 160039680 CCCGTCTGGCAGCAGCATGTATCCGTTGAGACAGTAGCACTTGTAGCTGCCGAAAGTGTTCATGCACCTGTGCTTACAGGGCCGAGGCTTCAGGCCACACTCGTTTAAATCTGCGGAC
s HiC_scaffold_1  41803007 118 + 233722169 CCCGTCCTCTTGCAGAATGTAGCCTTTAGGGCAGGAACACTGGTAACTCCCCTCTGTGTTTTTGCAGATAAAATTGCAGGGTTTGGGAGCCTGGTCACACTCATTGAGATCTAAGAAC

a score=8698
s chr3           133659025 833 + 160039680 GTATAGAGCTGCATTTGGTGGTGCGTGGTCATGGCAATTACTGAA---GGGCAGGCCAGAGATCAGAGCCTTGTAAAACTTAGAAATAAGGGACAGTTTGAGACTTGGTAAGAAAAAAAAAAAAAAAAGAACCACCTCAGTATGGTGGTCCTCGGAGTTCCACACTGGGGAAGGGCTCTCTCTTTTGTAGGAAGAAAGGTGAAAGAGTTCTTGCAAGAATTTAATAGCAAGCATTTGGT---------CAATCCTGACTTCTGGAAAGTCTCACAGCCCTCACTGGGTGGCAGCCCTCTTGGATGAGTAGCCTGGCATCTGCATGGTGGACTGGCTATGGGGAAGGAGCAAATGTTACTTCCCGGTAAACACCCACAATGTGTTGTAGCCAGGAGTCACTTTAAGACATAAGCACCTGTCTGACCTTCGGCCGTCCCATGTGTCAGAAACCCATAGAAGTCCCCAGGTTTTAGATTCTACAGACC---AATGCACTGG-----------GTCAGCCTGT-AGCTGCTGGTGATGCCACTGTGGCTCAGCCGAAAGACTCTGACTCGAATCTGCTGGGTGCCTTGCACTATAGGGCAGGGGTATCGCAACATGGAAGAAAGC-----------------AGAGGGCATCATATGAAGGAATCAGAAGAGCAGGAAAATGGCTTAGCCACTTGTTTTCTGCCAGTGATGGAGCTGGAAGAAAATACCCTCATGGCTCCCAC--TTTCCCTCTGCCACTCATACCCCAAGCACC---TCTTGCTAAGGCGAGGAGGGAGTGACAAGGTTCTGCTCCTGTGATTTGGTCAAGG--GATGGATTGGGAGAACCTTGAGTAACGTTGGGGCTCCGGCTATGCCCTTGCCC
s HiC_scaffold_1 126399749 821 + 233722169 GTGTATGCCTGCATTTTGACATGAGTGACTG-GGAGAATACTGGACATTAGTAAGACAGAAATTGGAACTTT-TAAGAATCAGAGACCTGAGACAG----AAGCATTGTAAAGGAAACAAAG----------CACCTTGGCAT--TTGCCACCTCAACTCCACCAGGGGAGCAGAGTTTCTGCT--------ACACATGTGAGAGCGT------GGGAGTCT--CAGCAAACGTTTGGCAGTCGATGGCAAGCCTATCTACTAGAAAGTTTCACAATCCTCACAGGCTTACAACCCGCCTAGGTGAGTAACCTGAAATCAGCAAGGTAGCTTCACTTTGGAAGAGG-----ATTTCACATCTC-CTAGTGATCTCTAGAGTACTCTAGCTAGGAGCTATCTTGAGAAGTGGGCTGTTGTCTAAATTTGAACTGCTCAACGGCTAGGAAATCCCTGCACATCCCCATTTCTGGGACTTCATGAACCTGTACTGCACTGGCTTGAGTGAAAATCATCCTGTGAGCTCAAGTTGTTCCAGCAGTAGT---------AGAAACCAACCTAAGCCTAGGTGGGGTCTT-CATTATAGGGGACAGGT---GTGACATAGAGGGGAGCTTCCCTCTAGAGCAAGAAGATGTAATTACCCTCTGAGATTAAGGGTGAAGCAA----GCTGAGTGGATTG--TTCTGCTGGTTCCATGCCTGAAGGCAGATGAC--CAGTGTTCCCACTATTTCTCCCCACTGCATTGGTTTCAAGCACTAGATACTGAAAAGGTGAGGCAGGAATATCTTGGTTCG--TACTGCAGCATCACCCATGTAGATGTGCTGAGATGACCTTTAGTAACTCTGTAGTTTGAACTTTTGCTTTGCCC

a score=5642
s chr3           133711845 399 + 160039680 CAAGATGAGGCAGAACATCATAG--------TGAGAAACACATGGTAGAATAAGTATGCTTACTTCATGGTATCCACgagaagaaaaaggatgaagatgaggaagaagaggatgcagaaggaggaggagaaagagagagagagagagagagagagagagagagagagagagagagagagagaaatatgg-------gagagaaatatgggagagaaatatgggagagaaatatgggagagaaatatgagagaggaaATGTCAAGGCATAAGATACAACCTTGATATACCTTTGATATGACAGTAACTACAGTCTCTACCTAGGCCCTAGTCCTAATAGCCTATTCAATCATGACCTCACAAATGGAGTAATTAATTGGTGAACTTAGCACCCTCATAATCCAATTACTGATCAT
s HiC_scaffold_1 121146584 386 + 233722169 cgAGATG-GGCAGAAggtaataaaattgaaataaaaatcctatgaagaagtaaaaaatattaggtaacagtaacaaaaaaacaaacaaggaaaaggaTAAATAATGAATAGAGATTAaactagaggaaaaaagaaaaaaataataaataagcagATGGAAGAGAGATGGCAAGGAAAAGGTGGATAGAGAcctaatgaaacaaataaaacatagtaATATTGAAAAGAG----GAGCAAGAAAATTGGGTGATAAAA--------CACCAGACTCCACC---ACAAAGATTT--TAAGAAAGCAATGAAGG----------GGCTATTCTTCTAGTAGCCCATTCAGTTATGCACTCACCAATGGATTAACCCATTGATAGAGTTAGTACCTTCATGATGCAATAACTTCCCAT

a score=4218
s chr3           133712008 229 + 160039680 agagagagagaaatatgggagagaaatatgggagag-aaatatgggagagaaatatgggagagaaatatgagagaggaaATGTCAAGGCATAAGATACAACCTTGATA--TACCTTTGATATGACAGTAACTACAGTCT----CTACCTAGGCCCTAGTCCTAATAGCCTATTCAATCATGACCTCACAAATGGAGTAATTAATTGGTGAACTTAGCACCCTCATAATCCAATTAC
s HiC_scaffold_1  72924966 226 + 233722169 AAATAAAGAATGTTATAGATGAACACCGTGGGAAAGGAAATATTgcatggcacccaggaagcagagaatgaaggaaggagc-ccaaaaca-aaaatatatcctTCCTGGTCATCCCCGCTGTGAC--------CAGCCTGTTACAACCATGCCTCACCTCCAAACAGTTTAGTCAGTTATAAACTCATCAATGGGCTAATTCATTGATAAACAAAGCATTCTCATGATCCAGTTAC

a score=4306
s chr3           133712022 215 + 160039680 atgggagagaaatatgggagagaaat--atgggagagaaatatgggagagaaatatgagagaggaaATGTCAAGGCATAAGATACAACCTT---GATATACCT---TTGATATGACAGTAACTACAGTCTCTACCTAGGCCCTAGTCCTAATA-GCCTATTCAATCATGACCTCACAAATGGAGTAATTAATTGGTGAACTTAGCACCCTCATAATCCAATTAC
s HiC_scaffold_1 222108587 202 + 233722169 acagaagagaa------gagagaagtggagaggagggaagggttAAGTAGGAA-AGGGAAGATGAGTTGACTAGGAGCAAGAGATACCATTCAAGGTATCCCCCCATTGATCCAAGAG-----GTGGACCTCACCT----------CTTAATAAGCCCATTCAGTTATGAACTCATCAATAGATTAACCCATTGGTAAACTCAGCATCTTCATGCTCCAATTAC

a score=4167
s chr3           133712064 174 + 160039680 ggagagaaatatgagagaggaaATGTCAAGGCATAAGATACAACCTTGATA---TACCTTTGATATGACAGTAACTACAGTCTCTACCTAGGCCCTAG-TCCTAATAGCCTATTCAATCATGACCTCACAAATGGAGTAATTAATTGGTGAACTTAGCACCCTCATAATCCAATTACT
s HiC_scaffold_1 168933768 170 + 233722169 GGGAAGCAGAATGAG-TAGAAAGGGTCAAAGAACAAGATATACCCCTTGCAGGCTGTCCTTAGTG-------GTCTGCCTCCTCCAGTTGGAGCCTAACTCCCAGTGTCCCACACACCTATGAACCTAATGATGGATTGATCAGTTGATGAGTTTAGCATCCTCATAATTCAATTGCT

a score=3944
s chr3           133712077 161 + 160039680 agagaggaaATGTCAAGGCATAAGATACAACCTTGA----TATACCTTTGATATGACAGTAACTACAGTCTCTACCTAGGCCCTAGTCCT---AATAGCCTATTCAATCATGACCTCACAAATGGAGTAATTAATTGGTGAACTTAGCACCCTCATAATCCAATTACT
s HiC_scaffold_1 140976178 160 + 233722169 AGAAAGGAAGGGTCTGTGGACTAGACATAGTCCCAGAGATTATGCCCT--------CCTTACCCACTTCCTCCAACTGGTCCCCACCTTTGGAAATAGCCCATTTGGCTATGAACTCAGTAGTGGTTTAAATCATTGATGAGTTCAGCACCATCATAATCTAATCACT

a score=3962
s chr3           133712142 94 + 160039680 CTCTACCTAGGCCCTAGT-CCTAATAGCCTATTCAATCATGACCTCACAAATGGAGTAATTAATTGGTGAACTTAGCACCCTCATAATCCAATTA
s HiC_scaffold_1 155201728 95 + 233722169 CTCTAACTAGAGCCCACCACCCAATATCTTCTCCAGCTATAAAATCATCAATGTAGTAATTATTTGATGAGCTTGGTGCCCTTAGAATCCAATTA

a score=4187
s chr3           134016287 198 + 160039680 GCACCTGGTGAGGGTCTTCTTGATAGCAAAGTCCTGAGATGATTCAGGGCCTCAATTGGCAAGAGACACAGAACAAGC-------AAGCTGGCTTTCATGGCAGCCTCACTTGA---GATGGGCTTCCATCTGGTCAC-----------------------------------------ATATC-----------------------TTACCATCTTATAATAGGGATTACTATTCAGCACAAGTTTTAGAGGCAATAAACTTTATGTAAAT
s HiC_scaffold_1 115506409 272 + 233722169 gCATGTGGTGATGGCCACATTGCTGGCAGAGCCCTGAGGTGGTCCAGGGCATCACATGAGAAGAGACAAGGAGCAAGTGTGTCTGGATCCTGCTCCCAAAGCAGCACTATTCAATCTTAGGGGCTCCACCCTGCTGACCTGTGTAAATTCCAGTCATCTTCCACAGGCCCCACCTCTAAATATCATAGCCCATTATTTCCTCCCTCTTTAATATCTCATGATGGGGATTAAAGTCCAATGTGTGTTTTGGAGGGAACAAACCATATTCAAAT

a score=4100
s chr3           134016287 72 + 160039680 GCACCTGGTGAGGGTCTTCTTGATAGCAAAGTCCTGAGATGATTCAGGGCCTCAATTGGCAAGAGACACAGA
s HiC_scaffold_1 228305143 72 + 233722169 GCATCTGGCGATGGTCTTCTTGCTAGTAAAGTTTTAAGATGGTGCAGGGTGTCACATGGTAAGAGACAGGGA

a score=22019
s chr3           134365386 749 + 160039680 tgttttctTTTTTCAT-ATTTAGTTTTTATGCATAGCCATAAACTTAACTCTGCTTTCCAGGTAGACTTGGAGAGGGAATGAGGAAAATATGGAACCCCCAAAACTTCAATGATTGCAGAGATCAGAGAGTATTGTGAGCAGATGAGGAGGGGTCATAGG-TACTCTCCTGAGGTACAGAGGGAATGGTCT-GGTGGGTAAGATGCCTACAAGCCAAAAGAATTAGAGTTGTCCACAGATGGAAACGGTGATCATCTTGCTGGTCTTGCCATTCCCATATCCCAGATGCTCCAAGGCTTCCACGTTGTGCATGCCTCTCTTCACCTTCCCAAACACCACATG-TGGCCATCTATCCACTCAGTCTTGGCAGCGCAGATAAAAACAATCTGGAAACCATTTGTGTTTGGCCCACTATTTGCCATGAACAAGATACCAGGACCTGTATGCTTCAATATGCAATTCTTATCCTCAAAATGTCTCTCCGTAGATGGACCTGTTACCAGGAGCACCATGGTGTGTGAAGTTGCCACCTTGCCACATGAATCCTGGTATAATTCTGTGAAAGGAGGAACCCGTCTATCCAAGTCCTTTCTCCCCAGTGCTCAGAGCACAGAA-GGTTTCTGCTGTCTCTGGAAGTTTGTCTGCAAACAGCTCGAAGGAGATGCTTCTCAAGGGCTCAGCCATTGGCCAAGATGTTGAATAACAGGGTGGGGTGGACCATGACT-----GCAGC------------GGACAGCGGCATCTGCAAAGCC
s HiC_scaffold_1  72460675 720 + 233722169 tgtctttttttttaattatttaggttTTATTCATAACCATAAGTTAAACTctgc-----------------------aaaaaggaaaatatggaacCCAGAACACTGCAGTTTCAGCAGAGATGATGAGGTGTTTTGAGCAGGTG------GGTCGCAGGGTGCCCTTCTGAGTGAGAGA---AATGGTTTTGGTGATCGTGATATAAAGGAGTCACATGTGT----GTTGTTCACGATCGGCGATGTTGATCTTTCTCCTGGTCCTGCAGTTTCCTGACCCGAAGCGCTTCATAGCACCC-TGGAGTTCATATCCTCTTTCACTTTCCTGAAGAACATGAGCTTGCTTTCCAACCTCTTGCTTTTGGTAATGCAGATGAAAAA----CTGAAACCCTTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCA----CTGAATTTCTC-CTATAGAC--ACTTGCCACCAGTGGCACTGTGGCCTGTGACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAACCTAatgttttctctccagtgttcacagcaaaaaatgttttctgttgtctttggAAGTTTGTCTGAAAATAGCTCAAATGAGATGCAGCCCAAGGGCTT-GCCATGGG-CGTGATATC-AAGGACACACTGGAGTTGACCACAGTTGGCAGGCAACAACTAAATAGGAAGGTAGCAGCATCCACAAAGCc

a score=17573
s chr3           134971417 610 + 160039680 TCTTTCTGTAAGCCATCTGAGGTAACCTGTGAAGATGGT--------------------------TCACTACTCTCTG-------AAAACCCTACAAAA-TCATGCAAATCAAGAGGTTCAAGTCTTTGTGTTTACTTTAAGAAT-GCCATGAAGCTGCCCAAGACATCAAGAATAT--ATGTC----AAGTCAACAGGCATCTGAAAGATGTCACCTTAAAGAAGCAATATT----------CCAGTTGTATAATGGAGTCTGTAGGTACACCAGATCAAACAGCAGGGCTAGACACAGGGTTGGTGCTCCAAAAGAAGTACTAAATTTTTGCTGCATGTGTTTAAAAATGCAGAGAGTAATGGTGAACATAAGGGCTTAGACGTGGACACACTACTCATTGAACATATCTA-ATGAACCGGGCACTGAAAATCCACCAAGGAGTTTAGGGAGCTTGCGGCTGCATTAACACACACATGAGCTCCTCCTGCCACACTGAGATGATTCTCACTG-GAAAGGGGTAAACCCTCCCAAAGCAGGAAGAGAGGATTGCACAGAAGAACAATGTATGCCAGGAGAAATGA--------AGAAACAAAA---------TCTTATGCCCAAAAACTTGTCTCAGAATGATTATTAGCAACAACAACAAAAAGGCTTAGCAAGGAAA
s HiC_scaffold_1 176819650 659 + 233722169 TCTTCATATAAACGGCCTGAAGTGAACTGTGAAACCAGTGAGGCTTCTCCCTGGTAAGTAGGGATTTGCTACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCACCAAGTATCTGAAGGGTGACTCTTGAAAGAAGCAGTGTGTGTCATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTGCTTAAGCCAAATG-AGGGCTAGACACAGGATTGAGACCCCAAAAGA-GTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAG--ACTCTAGTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCT------------GAGCTCGTGATCTAACTAATGAATACCTGAGTTCC-CCTGCCACATGGAGATAATCCTTATTGAAAAAGGAACAAATAGTTCCTAGGTCATAGGAGGAGGTTGCATCAAACACAAGAGTATCCCAGGGCAGGAGATAGTGCTCAGAgccataagtacctgcttggtaagcacaaggtcctg----agtttgattcctggtaccaaaaagaaaaagatatcccagaaaaa

a score=15816
s chr3           135121953 416 + 160039680 CAGAATGAGTGGAAACTAGACAAG-GCCACAGAC--AGTTTCTTCTAAAACCCAGAGGTTT-TCCACAGAGAGTCTATGAAGGGCAGTGTGGACCAGAAGAAGCTGGAGCAGCTGGACAGCAGGCCCACAGA--------ACAAAAACAAAATCGGAATTGATGGGATTCAGTAGTTCTGTGATGACCTGAGTCTGGTCCCTGCCAGTATCAGTGTTTTGGTCATAGCATAGAAGTTCAGGACTGACACTCAATGTGAATTTAGCAAAAAGGAATTCGTGGATGGCATGACAGAGCTGGGGTGTGATAGCACAGAGAGGCTGAAAACTCTTCCACCCAAACTGGAACAGGAACTTAAGGACTCAGCGAAGTTCAAGGACTTTTACCAGTTTAC---TAATTTCGCTAAGAACCCTGGGCAGAAGGGCTTAG
s HiC_scaffold_1 134546350 430 + 233722169 CAAAATGTCTGGAAGTTAGAAAGTTGCAACAAGATAAATCTTTTCCAAAAATCATAACTCTATATATGAATAAAGTGTAAAGGATCAT-TGGACAGGAAGAAGTTAGAACAACTATACAATAGATACAAAGATCctcaagatgaaaataaaattggaatagatggcatACAGCAGTTCTGTGATGACCTGTCACTTGATCTGGCCAGAATTAGTGTTTTGATCATTGCATGGAAGTTCAGAGCAGCGACACAATATGAATTCTCCAAGCAGGAGTTCATGCACGGCATGGCAAAATTAGGATGCGACAGCATAGACAAGCTAAAGGCTCAAATACCCAAGATGGAACAAGAATTGAAAGAACCAGGACGATTTAAGGATTTTTACcagtttacttttaattttgcaaAGAATCCAGGACAAAAAGGATTAG

a score=4434
s chr3           135171325 343 + 160039680 CAGTCATAGTGAAAAGCAGAAGGCAAAACTCCTTCGTGTAC---ACAAGCTAGACTCTTCTTGAGCAGGTTCAGATAGGACTGCTGTCATC--TTCCAGACACCAGACCCTGACTC--TCCAGCCCTTGAACATGGTTTCATACCACCAGTTACTCTCCAGGGGACTCCTGGATTTTCAGTCTCAGAATGGGGTTGTATCACTGGTCCCTCTGATTCTCTGGCCTCCAGCTTA-GACTGGGTAACTGTTGTTTTCCCCCTTCGCCAGACTGCAGGTGCCTATTATAAGACCACCTAATCTATGAGTATATAAGTCAACCTAATACATTCCCCTTTTAATTGAGCATACTCT
s HiC_scaffold_1 118839815 331 + 233722169 CAGTCAGGATGGAATGAAAGCTGAAGAATTCAGCC-TGCACTTGAAAAATTCCATTCTGCTTGAGCAGGAGCACCTTTTGCTCCTGACACCACTGGAGGACATCAGATTCCAGCTTGTTTCCACTTTTCAGTGTGGACTTG---CATCAGTAACTGTCCAGGGAGCTTCTAGGCCTTTAGTCTTAGGCTGGCATCTCATCCTCAATACCTCTCACTCTGTGGCTTCTAGCTTCTTGCACGGAAGCTACTAGAGCCCATGCTGTCAAGCATGCAGGTGGCTGTTGT-GGACTTTCCCACCTTTGACCTTGTAAG------------ATTCCTTTTT---TCTAGCGTACCCT

a score=6144
s chr3           135171367 326 + 160039680 CAAGCTAGACTCTTCTTGAGCAGGTTCAGA--TAGGACTGCTGTCATCTTCCAGACACCAGACCCTGACTCTCCAGCCCTTGAACATGGTTTCATACCACCAGTTACTCTCCAGGGGACTCCTGGATTTTCAGTCTCAGAATGGGGTTGTATCACTGGTCCCTCTGATTCTCTGGCCTCCAG---CTTAGACTGGGTAACTGTTGTTTTCCCCCTTCGCCAGACTGCAGGTGCCTATTATAAGACCACCTAATCTATGAGTATATAAGTCAACCTAATACATTCCCCTTTTAATTGAGCATACTCTCTATGGATTTTGTGCCCTTGCAGGA
s HiC_scaffold_1 221577036 313 + 233722169 CAAGCTCGAGTCTTCTCGAGCAGGTATGGTCTTGCGGCTGCAATTGCCTGT-GGACATCAGACTCCCGCTTCCTGTGCCACGGAC----TTCCCT--CACCAGTGACTCTCAAGGCAGCTTTCAGACATTCAGCCGCAGGATGGGGCTGCTCCACGGGTGCCTCTTGCTCTGAGGCTCCCGGCGTCTCCATCTGAACACTTTCTGGTTCCTCTGT-----AGTGTGCAGATGGCCACTGTGGAGGTGGCCAGCCTCTGATTCCGTAAGCCTATCTAATCC---CCTTTTgtaattatacatac---atattaatTTGGTTCCTCTAGAGAA

a score=4677
s chr3           135171368 353 + 160039680 AAGCTAGACTCTTCTTGAGCAGGTTCAGATAGGACTGCTGTCATCTTCCAGACACCAGACCCTGACTCTCCAGCCCTTGAACATGGTTTCATACCACCAGTTACTCTCCAGGGGACTCCTGGATTTTCAGTCTCAGAATGGGGTTGTATCACTGGTCCCTCTGATTCTCTGGCCTCCAGC---TTAGACTGGGTAACTGTTGTTTTCCCCCTTCGCCAGACTGCAGGTGCCTATTATAAGACCACCTAATCTATGAGTATATAAGTCAACCTAATACATTCCCCTTTTAATTGAGCATACTCTCTATGGATTTTGTGCCCTTGCAGGAGATATAAAGCCTGGCTTTTGACAaggtt
s HiC_scaffold_1  38517786 319 + 233722169 aagtgtgACCAGTTCTgaagagctccagtctttacTGGTGCC----TCTGAACAGCAGTCTCCAGTTTCTTCATCCTTCCAAACAGATTCACAT-ACTGGTGACGCTAGAGTGAACTTCTAGGTGTTTGATCTTAGACTGGGGCTACCTCCTGGGTCCCTCTTATTCTGTGGCTTCCATCTTATTAGGCTGAGCCACTACTGGCTCCTCC--------ACATGCAGACAGCCACTGT--GGACTCTTCCTCT------------GCCTACCTCATAAATTCcc---ttatgtaaatata---tatattgattC--TGCTCTTCTAGAGAATCTGAAA--TGGATTCTGAGAGGTTT

a score=5352
s chr3           135171402 202 + 160039680 CTGCTGTCATCTTCCA--GACACCAGACCCTGAC--TCTCCAGCCCTTGAACATGGTTTCATACCACCAGTTACTCTCCAGGGGACTCCTGGATTTTCAGTCTCAGAATGGGGTTGTATCACTGGTCCCTCTGATTCTCTGGCCTCCAGCTTAGACTGGGTAACTGTTGTTTTCCCC-CTTCGCCAGACTGCAGGTGCCTATTATAA
s HiC_scaffold_1   2378401 204 + 233722169 CTACTGTTATTGTCTGTGGATATCAGATTTTAGCATCCTTTAGCCCTTCCATGTGAAGTCACATCGACAGTT---CTCTAGGGAGCTTCCAGACCTTTAGGCTCGGGCTGGAGCTGCATCTTTGATTCCTCTTGTTCTGCATCTTCAAGCTTGAGCTGAGCAGCTGCTGAATCCTCTGCTGTTCCAGTCTATAGATGACCAACAGAA

a score=4622
s chr3           135171412 238 + 160039680 CTTCCAGACACCAGACCCT-GACTCTCCAGCCCTTGAACATGGTTTCATACCACCAGTTACTCTCCAGGGGACTCCTGGATTTTCAGTCTCAGAATGGGGTTGTATCACTGGTCCCTCTGATTCTCTGGCCTCCAGC---TTAGACTGGGTAACTGTTGTTTTCCCC-CTTCGCCAGACTGCAGGTGCCTATTATAAGACCACCTAATCTATGAGTATATAAGTCAACCTAATACATTCCCCT
s HiC_scaffold_1  36538261 233 + 233722169 CCTCTGAACAGCAGTCTCTAGTTTCTTCAGCTTTCCAAT-CAGATTCACCATACTGGTGACCCCAGAGTGAACTTCTAGGTGTTTGATCTTAGACTGGGGCTAACTCCTGGGTCCCTCTTATTCTGTGGCTTCCATCTTATTAGGCTGAGCCACTACTGGCTCCTCCACATAGACAGACAG-------CCACAGTGAACTCTTCCA--CTGTGGTCCTGTAAGCCTATATCATAAATTCCCTt

a score=5705
s chr3           135384178 197 + 160039680 AAAGTCCAGAAGATGCCATTCTAACACAGGACATGCTCATTAGGAAGATAGGTAGGCACAGAGGCTGCCCTCCTGAAGACATATTTA------TGAAGTTTTAAAAA----------TCTGTTGACGGAGATGACA--ACCATG--GAATTGGGTGGAAAACACATAG-CAAGAAAATCATGTCTCAAAAGTGCTATTTGGAATTCTTAGGTTTAAAA
s HiC_scaffold_1 183687333 207 + 233722169 AAATTCCAGAAGGCACCCTTCTAACACTGGACATGCTTGCTGTGAAGGTCAGGAAGCCCAAAGGCTAGCCTCATGAAGACACTTTTAATCTACTGGA----CAAGAAAAGCCTGCTCACTGTTAAAGAAGATGACACCACCATGAAGGAATCGATAGAAAAT-CATGGCCAAAAAAATCAAGTCTT-AAAGTGCCATT-----CTCTcgatttcaaaa

a score=4409
s chr3           135455183 66 + 160039680 AGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGGAGATGACA
s HiC_scaffold_1 182674694 66 + 233722169 AGGAATTGAATGATCTGGCACGGGACCCACCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATA

a score=5123
s chr3           135455183 66 + 160039680 AGGAACTTAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGGAGATGACA
s HiC_scaffold_1 121216178 66 + 233722169 AGGAGCTTAGTGATTTGGCTCATGACCCTCCAACACCATGTTCTCCAGGCCCAGTTGGGGATGACA

a score=5832
s chr3           135458797 79 + 160039680 AATGACAGCCCATATCAAGGTGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGG
s HiC_scaffold_1 182674792 79 + 233722169 AATGATAGCCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTCCCCAACAGATTATCCCTTCAAACCACCTAAGG

a score=8423
s chr3           135459972 108 + 160039680 AGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTAAGATCACAGTGGTCTCCTGC-TTTAACTATTTCTAAAG
s HiC_scaffold_1 121216352 109 + 233722169 AAGATGCATTTACAACAAGAATTTATCAACCAAATATTAACAGTAGTGACAGCATTTGTGTCAATATTCTAAGATCACAGTGGTCTCCTGCTTTTAACTATTTCTAAAG

a score=8576
s chr3           135459972 108 + 160039680 AGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAG
s HiC_scaffold_1 182674868 108 + 233722169 AGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAACATTTGTCTTGATATTCTTCAGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAG

a score=6585
s chr3           135462947 99 + 160039680 AGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGACGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAGTA
s HiC_scaffold_1 182674974 99 + 233722169 AGTACTCTTGTCCATCTGTTCTCTGTTGTGTGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGTA

a score=7961
s chr3           135462947 97 + 160039680 AGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCAAACCCAGACGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGACAGAGATAAG
s HiC_scaffold_1 121216459 97 + 233722169 AGTTCTTTTATCCATTTGTTCATTGCTATGTGATCCAAATCCAGTTGACCTCCTAGTGCCAGAGACTGCATGAATCTATAAAACAGACAGAGACAAG

a score=57290
s chr3           135465190 870 + 160039680 ACAGGTACAACAGAATATCTCGGGAATGGACTCAGA--------AGTATGCCATGTGATGCTACCTTACAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTGTTCCTTTTTTGATTTTCTTATCCGGCTGCTCCCCTATCAGACCTCATCTTTTTTAATTTTATTTTTTGTTTACCTCCCTCCATTCATTCACATGCTCATCTGAGAAGACTTAAGTTCTTCCAGCTTTGGACAATAACTGCTTTTAGAAACTGTAAAGTAGTTACACGAGAACAGTTGCCCAAGATTCAGAA--ATTTTTTTAAAAACTGGAGCATGTGTATTATGTGGCCAATGTCTTCACTCTAACTTGGTTATGAGACTAAACCAATCCTCACTGCTCTAACATGCTGAAGAAGCCATCTGAGGGGGAGGGAGATGGATGCTCAGCTGTCACATCAAAGGAAGCAGCATTATTCTAGCAGCATCCGTTCTTGTTTAAACCTTCCACTGTTAGAGGTTTGAGGTTACATGATATACTTTATGCTCATAACTGATGTGGCTGGAGAATTGGTATTGAA-TTATAGCATCAGCAGAACAGAAAATGTGATGTATTTTATGCATGTCAATAAAGGAATGACCTGTTCTTGTTCTACAGAGAATGGAAATTGGAAGTCAAACACCCTTTGTATTCCAAAATAGGGTCTCAAAACATTTTGTAATTTTC------ATTTAAATTGTTAGGAGGCTTGGAGCTATTAGTTAATCTATCTTCCAAT--ACTGTTTAATATAGCACTGAATAAATGATGCGAGTTGTCAATGGATGAGTGATCAACTAATAGCTCTCCTAGTAATTGATTTA-TTTTTCTTCAATAAAGTTGCATAAACCAA
s HiC_scaffold_1 121216551 850 + 233722169 ACAAGAACAATAGAATATCTCGAGAATGGGCTCATGCCCATAATAGCATGCTATGTCATGCTATCTTACAATCGGAATAAACTGTATTATAGCTGGAATAAACTTCAAGTTACTGTTCCCTTTTTGATTTTCTTATCTGGCTGCTCACCTATCAGACctcatcttttttaattttattttttgtttacctCCCTCTATTCATACACATGCTCATCTGAGAAGACTTAAATTCTTCCAGCTTTGGACAGTAACAGCTTTTAGAAACTGTAC-----TTACAAAAGAACAGTTGCCCAagattccaaattatttttttaaaaa-tggagcatGTGTATTATGTGGCCATTCTTTTTACCCTAACTTGGTTATGAGACCAAACCATCCTTCACAGCTCTAAC-TGCTGAAGAAACCATCTGAGGG---GGTATATGGATGCTCAACTGTCATGGCAAAGA---------------AGCAGCATCCATTCTTG-TTAAACCTTCTACTGATAGAGACTTGAGGTTATGTGATATACTTTATGCTCATAACTGATGTGGTTGGAGAATTAGTTTTGAGTTTATAGCATCAATAGgacagaaaatgtgatatattttatCGATGTCAATGAATGAATCACCTGTTCTTGTTCTACAGAGAATGCAAATTGGAACTCAAACACCTTTTGTATTCcaaaatactgtctcaaaatattttataattttcacttaaatttaAGTTGTTAGGAGGCTTGGAGCTGTCAGTTAATCTGTCTTCTAATACACTGTTTAACATAGCACTGAGTAAATG-------------ATGGATGAGTGATC-ACTAATAGCTCTGCtagtaattcatttatttttttttcagtaaagttgcataaaccaa

a score=3825
s chr3           135465192 49 + 160039680 AGGTACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGAT
s HiC_scaffold_1 182675068 49 + 233722169 AAGTACAACAGAATAGCTCGAGAATGGACTCAGAAGTATGCGatgtaat

a score=4270
s chr3           135594950 140 + 160039680 GCTAGGTGCAGGACAGAGTTGCCCCAGCGGTCCAGAAGGCTCAGGTCAGCCCCAACCCTCAGCAAATCCTCTACTACATCTTCCTGCTTGGTGATCACGGCCAAGTGCAGAGGTGTCTACACAGAGAAGGAG---AGGGAGAG
s HiC_scaffold_1  17512491 143 + 233722169 GCAAGGTGTAGGGGGGTGTTTCCTCGAAAGTCCCGGAGCTCAGGATCACAGCCAGCTTCCAGAAGTGCCTGAGTAATTTCAGGCTGCTTGGTGATCACAGCCAAGTGCAGTGGAGTCTGCAGACGgaagaggaacaggaagag

a score=8946
s chr3           136009887 721 + 160039680 ATATTACTGCAGAGGGAACACCCGAAATACCCCTTGCAG-TTCCACTTGGTTTTAGGTGACTTTAAAA-ACTAATCCATTTTGGAAGTCACCCAGCTGGTCTCTCA-----CTGCTTCAAAATAGATAGTGACT-ATTCCTGAGGC----TGCCTAACAGGGTCAAAGTGCTTTATCGGGGAGTCCTGCCTCCTCCTGGCCTTTGGGGGAAGGTGCTTTTGAAATCTTATTTTAATTTCTTTTCTGTTTTAAAAATTTCTTTTGGCCTCTGACTGAGACTAGAAACATACTGCTATCATCTCCTATTCTCCCCAAAGATGACCA---TTTGTGTATTCTAAAGACTC----------ATAATTCCCGGGGACAAGATCTGAAATGAAAGGAGTCATGGGGCTCCTTATTGTTTGCTTTTCTTTAGATTTATAGGACCTGTATTATTTGGTGGCCCACAGAGGATGACAGCACATGCACCAGAAAAGCAAACCACTCAAAACTGGTGTCT-CTATTAGATCTGTAACCACACTGGCACATGTCTATCTGATACGCGCCCCCATCGCTAAAATGTAAGCCCTGGGCATGTGGCACTCAGATGTGGCGGGTCTCTGT-TCAGCTACAGCCTCC-TCTTTTCTAGTTTGTTAGCTTTCTAAATCAATCTTTCCCTCCCTAGAACAAGAACAAGTTTCCCCTCGAGTCACTGGAGTTTATGAGTGGTAAGCAATGAGTTTGGCTTCACAGTGCC
s HiC_scaffold_1  85884271 697 + 233722169 ATATTGTTACCAAGGAAA-ACTCTACATAAACCCTCTAGCTTTCACTTGCCCTTAGTTGACTTTAAAAGAATCACTAACTTTGAAAGTCATGCAGTTGGG-TATCATTAGTCTGCTACAGTCTTTTTGGTGGGTCATTTCTTTGATGACACACCTAACAGGTTAAAAACTGCTCTTCAGCAAATGTTGGCTCCCCTAGTGCTCCAGAGGTAAGTG----------------------GCTTTACTGT-------GTCTTCCTTAGTCTTCTAGTGAAA--AGTAGCCTTTTACTGCCTTCTCCTGTTTTTCCAGAGGCCAAAAAGTCTCTTTGTATTCTAAGAACTTCACAAAATTAACTATTCCTGGTCAAAGGAACTAGAAAACCAAGAGTCATGATG-----TCATGGTAACTTTTTTTTAGATTTACATAATCTAAAACATTCAGTGACCCACAGAAAACCACAGCTTATGTGTCAGAAAAATAGGCTACCAGGAATTTGTAACTACTTCAAAATTTAGACCTGTATTTCTGTCTAACTACCTGATATGCCTCC----TGTCAAACTCTGAG--ATAAGCATCCTACCTTTATGCAAGATGG---TCTGCATTGGTGACATCCACCAACTTCTTTGATTTGCCAGCTTTCCAAagaggtttctttctttgtcca-----aATGACTTATCATTTGAATCACTGACCTTCTCTAGTGGCAGACAGAGAAGCTGGATTTATGATTCC

a score=7208
s chr3           136009887 677 + 160039680 ATATTACTGCAGAGGGAACACCCGA--AATACCCCTTGCAGTTCCACTTGGTTTTAGGTGACTTTAAAAACTAATCCATTTTGGAAGTCA----CCCAGCTGGTCT------CTCACTGCT-TCAAAATAGATAGTGACTATTCCTGAGGCTGCCTAACAGGGTCAAAGTGCTTTATCGGGGAGTCCTGCCTCCTCCTGGCCTTTGGGGGAAGGTGCTTTTGAAATCTTATTTTAATTTCTTTTCTGTTTTAAAAATTTCTTTTGGCCTCTGACTGAGACTAGAAACATACTGCTATCATCTCCTATTCTCCCCAAAGATGACCATTTGTGTATTCTAAAGACTCATAATTCCCGGGGACAAGATCTGAAATGAAAGGAGTCATGGGGCTCCTTATTGTTTGCTTTTCTTTAGATTTATAGGACCTGTATTATTTGGTGGCCCACAGAGGATGACAGCACATGCACCAGAAAAGCAAACCACTCAAAACTGGTGTCTCTATTAGATCTGTAACCACACTGGCACATGTCTATCTGATACGCGCCCCC--ATCGCTAAAATGTA--AGCCCTGGGCATGTGGCACTCAGATGTGGCGGGTCTCTGTTCAGCTACAGCCTCC----TCTTTTCTAGTTTGTTAGCTTTCTAAATCAATCTTTCCCTCCCTAGAACAAGAACAAGTTTCCCCTCGAGTCAC
s HiC_scaffold_1  61079753 567 + 233722169 ATGTTACTG---AGGGGAAACCTAACTAAAATCTCT---AGCTCTACTTGCTTACAGTTGATTTCAAAAGC--ATTAATCTTGGAGGTCAGTAGCTAAGTTGAACTAATTTCCCCACTGGTCTTGTTGTAGATGGCAAGG----CTGACGTCATTAAACAGG-TTAAAG---------------------------CTATTCTTCTGTGAAAGCTGCCTTTCA----TtgtcttcctttgttttctgATG-AAAGATACCTTTTG-------------------------------------------CACCTAAAGAGTAAC----TGTGTGGTC----AACT----ATTCCTGAGAAAAAGACCTAAAA-GATGTGGGCAAAACACTTCATAATCAGTAGATTTTCTTTAGATTTATAGAACCTGGAACATCTGGTGACCTATAAATAACAGCAGCACATGGGTCAG-AAAGCTGACCACTCAAA-----------------ATCTGTGACCACCCTAGAGCCTGCCTATCTGAGGTGACTTCCCAAACACCCTGTATGCAGGAGCCTTGCACCTGCAACTCTAA------GCAAGATACTGTTTGTTGACAATCACCTCCATCTTCTTTTGTTTGGTACATTTCCAAATC--TTTTTCTCTGCCCA----AACAACTTGTCACCTTTTGAGCAAC

a score=4493
s chr3           136407577 199 + 160039680 CCAGCCATACTATACCTGGC----CATCAC------AGAAGGTTGTAGGTACCATCCAGGTGCTGATAGAATCAAGCTCTGGTTCATAAAGTTCCATGTCTGACCCAAATAAGTTTGTTAATTTATACTCCCTGAGAACACTAAGCAG-----AGGAAACTGACCAGAGCTACTCAGGAACCATTATGGTGATTACAATTCAAGATGGCTACAG
s HiC_scaffold_1   1966689 203 + 233722169 CCAGCTAGAATGTACCTGGTTTATCTTCAACTAATAAAAAGGTCCTCAGACACATTCCTGTACTGATATA-CCAGGGTCCAGGTTATAAAGC-CCATGTACTACGCtg-tggttttgtttatttata--------ggatGCTGGGAAGTTGTTAGGAAACCAACCAGGGTTTCTCAAGGGCCATGATAATGGTCACTGTTCAAGGTGGCTGCAG

a score=4386
s chr3           136407702 92 + 160039680 GAACACTAAGCAGAGGAAACTGACCAGAGCTACTCAGGAACCATTATGGTGATTACAATTCAAGATGGCTACAGTCATGTCAAACTAAATCC
s HiC_scaffold_1 146679628 91 + 233722169 GAAAACAAGGCAGGAAAAATTG-TTACAGCTGTTCTAAGGCAATCATGGTGGTTACAACTCAAGATGGCTACAGTCGGGTCAAGCTGAATTC

a score=4340
s chr3           136537056 131 + 160039680 TAGTTAAACATCCCTACTCTGGAATTTGGAAATCTGAAATGCTGTCAAATTTGAAATGTTCTTAAAACAAAGCTGATGCTACAAGTAGAAATTTCCATCCCCATCCTTGTGTGACAAGCCACAGTAGACAT
s HiC_scaffold_1 220337529 131 + 233722169 TAGTTAGACATTCTTGATCTGAAAATCTAAAACATGAAGTGTTCCAAACTGTAAATAGTTTTGATCACTGGCATGATGCCACAAGTGAAAAATTCCATACCTGGCCTTATGTGATGGATTACAGTCAAAAT

a score=8284
s chr3           137643977 141 + 160039680 ttattatatttatGTAAAGAAAACTTAGTA-TACATTTAATCCAGTTTAGTGGCAAGTTCTTTAACCTTTGCCATTTT-AGTTTGGCAGTGTGTGCCACAGACTTGGGACCCAGGACGCTGCCTCCCCAGTGGCGGCAGATCT
s HiC_scaffold_1 194457628 143 + 233722169 ttattgtttttatgtacaAAACACCAAAGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTTTTCCAGCTTGGCGATGCGAGCCACAGATTTGGGGCCCAGGACGTTGCCTCCCCAGTGACGACGGATCT

a score=27030
s chr3           137643977 590 + 160039680 ttattatatttatGTAAAGAAAACTTAGTA-TACATTTAATCCAGTTTAGTGGCAAGTTCTTTAACCTTTG------CCATTTTAGTTTGGCAGTGTGTGCCACAGACTTGGGACCCAGGACGCTGCCTCCCCAGTGGCGGCAGATCTCATCATATCTGCCATTATATTTGGTCCTAATAGCTTCCAGCAGCTTAGCCAGAGCACTCTTGTCTTCCAAGTTAACCTGTGTGAAGGCAACAGTAGTGCATGTCTTCCTGTGGACCAGGCACCCCAGGCTGGCCTTTCCCTTGATGATGCAATAGGGCACCCCCATCTTTTGACACAGGGCAGACAGGAAAACCACCAGCTCAGTTGGGTCTATATCATGGGCAGTCACCACCAGCTGAGCCTTCTTGTTCTCCATCAAGGTGGTGACTGTATTGACTCCTGCTCAGAGGACAGGCGGTCTCTTAGTTGGGACTTCCCCTTTGCCAGCAGCTTTCTTCTCAGCATGGACCAGTAGCCTTTGCTTATTCTCTTGCTCTGTCTCTGGACTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAACTGTTTGCCTGTCCAAGACCTGAGTTAAT
s HiC_scaffold_1  62307238 531 + 233722169 ttgttatttttatgtacaGAAAACTCAGGAGTTCACTTAGCCCAGTTTAGTGGCAAGCTCTTTAGTCTTTGTGTTTTCCAGCGTGGTTTA----TGTGAGTCACTGATCTAGGACCCAGGACAGTGCCTCTTCAGTGCCGGCAGATCTTAGAGTATCTGTCGTTGTATTTGGTCCTGGTCACCTCCACCAGTTTAGCCAGTGTGTCTTTGTTCTC--AGTTGATTTGTGTGAAGGTAGCAGTGATGCAGGTCTT-CTGTGGACCAGACA-CCCAGCCTGGCCTTCTCCTTGATGATGCAGTAAGGGACCCCCATCTTTTGACAC-GGGCAGGCAGGAACACAACCAGCTCGGTGGGGTCCATGTCGTGTGCAGTCACCACTAGCTGAGCCTTCCTACTCTCCA-----------------------------------------GGTCCCCAGGT---------CTCCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCC-TCGCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCT------CAGGCCACGTCCTGGGTGAAt

a score=4917
s chr3           137644083 128 + 160039680 ACCCAGGACGCTGCCTCCCCAGTGGCGGCAG--ATCTCATCATATCTGCCATTATATTTGGTCCTAATAGCTTCCAGCAGCTTAGCCAGAGCACTCTTGTCTTCCAAGTTAACCTGTGTGAAGGCAACAG
s HiC_scaffold_1 194457925 127 + 233722169 ACCCAGGACAAGGCCTGCAGGGACTCAGCACTCACCTCGTCATATCTGTCATTGTAGTTGGTCCTGATTGCCTCCACCAACTTGGCCAGTGCTCCCTTGTCCTCC---CTAACAAGGGGGGAGGGGACAG

a score=10240
s chr3           137644181 138 + 160039680 CTTCCAAGTTAACCTGTGTGAAGGCAACAGTAGTGCATGTCTTCCTGTGGACCAGGCACCCCAGGCTGGCCTTTCCCTTGATGATGCAATAGGGCACCCCCATCTTTTGACACAGGGCAGACAGGAAAACCACCAGCT
s HiC_scaffold_1 194458234 138 + 233722169 CTTACGAGTTGACTTGTGTGAAGGCGACAGTGGTGCAGGTTTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTCCCCTTGATGATGCAGTAAGGGACCCCCATCTTGCGACACAGGGCAGGCAGGAACACAACCAGCT

a score=5580
s chr3           137644305  95 + 160039680 GAAAACCACCAG------CTCAGTTGGGTCTATATCATGGGCAGTCACCACCAGCTGAGCCTTCTTGTTCTCCATCAAGGTGGTGACTGTATTGACTCCTG
s HiC_scaffold_1 194458827 101 + 233722169 GAAACCCAGCAGACCTACCTCAATGGGGTCCACGTCGTGTGCGATCACCACTAGCTGAGCCTTCTTGTTCTCCACTAGAGTGGTGACAGTATTAACACCTG

a score=13473
s chr3           137644396 285 + 160039680 CCTGCTCAGAGGACAGGCGGTCTCTTAGTTGGGACTTCCCCTTTGCCAGCAGCTTTCTTCTCAGCATGGACCAGTAGCCTTTGCTTATTCTCTTGCTCTGTCTCTGGACTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTTTGCCTGTCCAAGACCTG--------AGTTAATGGCAGAAGGTACTTTGAGCCAGTTATAGAGGGTGGCTCTTTGCCACTGCAGCCTGATGTAGCGGGGCCATTTGACAAAGCATGTGAGATCTCTTTTGGGCTGGATGTCTTGCCC
s HiC_scaffold_1 194459095 467 + 233722169 CCTGCTCGGAGGACGGGAGGTCTCTTAGTGGGGACGTCCCCCTTGCCAGCAGCCTTCTTCTCAGCCCGGGCCAGAAGCCTCTGCTTCTTCTCTTGCTTCGTCTCTGGTCTATACTTGTGGGCGAGCTTAAGCAGCTGGGTAGCTAGGAAAGCATCCTTCCATTAGGCCCTGCAGTTTCAGGTCCAGTCTGTCGCTTAGCATGATGTAAATTCGAAGTCCCTAGCAGTACTACAGGTTGAGCAGAAGCCCACAGGGCTACACACAGGGCCATGCACCACCTTTCCAGTTAGGCTGATTCCACACCCCCAAAGCCCACCTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCAGCCGCTTATACAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTGTCC

a score=10102
s chr3           137644561 262 + 160039680 GTTAATGGCAGAAGGTACTTTGAGCCAGTTATAGAGGGTGGCTCTTTGCCACTGCAGCCTGATGTAGCGGGGCCATTTGACAAAGCATGTGAGATCTCTTTTGGGCTGGATGTCTTGCCCAATGCCAGAGTTCTTGAGCCTTTTCT----CAAAGGATTGACCACCTTTTTGGCCTCCTATTTCTTGACTCTGGTGGACGCTGGAGCCACCTTCTTCGCCTTGGCTTTCTTTC-TTTGGGCATCTTGCCAGGCTAGAGGAGAGAGCT
s HiC_scaffold_1  62308110 251 + 233722169 gtTAATCACAGGTGGCACCTTCAGCTGCCTACACAGGAT-------TGCCACTGTCAC----TGCAGCAGGGCCATTTGACAAAGTGGGTGAGAGCTCTCTTGGGCTGGCTGTCCTGTCCAATGCCAGAGTTCTTTGACCTCTTCTTAGACAGGGAATGTATCACCTTCTTGGCCTCCTGCTTTTTATGACAGCAGGAGGCAGG-GCCACTTTTTTCCCCTTGGCCTTCTTCCTTTTTGTCACCTT----GGGCAGCTGACAgagct

a score=7243
s chr3           137644679 151 + 160039680 CCAATGCCAGAGTTCTTGAGCCTTTTCTCAAAG----GATTGACCACCTTTTTGGCCTCCTATTTCTTGACTCTGGTGGACGCTGGAGCCACCTTCTTCGCCTTGGCTTTCTTTCTTTGGGCATCTTGCCAGGCTAGAGGAGAGAGCTAAATTAA
s HiC_scaffold_1 194460178 148 + 233722169 CCGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCCGGTGCCACCTTCTTCCCCTTGGCTTTCTTTCCTT-------TCGGCtgggcagagagaaaagccagctAAA

a score=3736
s chr3           137865131 73 + 160039680 GGCTGGCGGTAAGGCTGGAAAGGACTCCGGAAAGGCCAAGACAAAGGCGGTTTCCCGCTCGCAGCGAGCCGGC
s HiC_scaffold_1  79366300 73 + 233722169 GGCTGGAGGCAAAGCTGGGAAGGACAGTGGGAAGGCCAAGGCCAAGGCCATGCCCCACTCCGGGAGAGCTGGC

a score=4529
s chr3           137866008 136 + 160039680 AGGTACTTGAGTTGGCAGGAAATGCGTCAAAAGACTTAAAGGTAAAGCGTATCACCCCTCGTCACTTGCAGCTTGCTATACGTGGAGATGAAGAATTGGAT---TCTCTGATCAAAGCTACCATTGCTGGTGGTGGTAT
s HiC_scaffold_1  92228162 139 + 233722169 AGATCCTGGAGCTGGCTGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCTCGCCACCTGCAGCTGGCTATTCGCAACGACGAGGAGCTGAACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGT

a score=4167
s chr3           137912049 80 + 160039680 ATTAGCACACATTAATTATATAGGGCAGTGGGTTTCATCGTGACATTTTCATACGCGCATATAATACATTTTGTCATCTT
s HiC_scaffold_1 105427749 80 + 233722169 attgGTACATATTAAGTATACAGAATAATGGGTTTAAATGTGGCATTTTCATACATGTGTATAACATACTTTGTTCTATT

a score=7485
s chr3           138011170 289 + 160039680 TCTTTGTTCCACGATCAGTAACAA-AAGCAGTGTCCATTGGAGGATGAACAGGCCGTTGCTGGGTAAATTAGCTTGTAGAACTACTTCTGGTA------CAAGGTTGAGGGGACCTCTCTGCAAGC----------TTGGCAGAATCTTTTGTGATAGCTATTATCAGGTAACTGTATGTAAGAACATTTCC--CAACGT--CCAGTTCGACTTCCTTTTTAAAAGTAGAGATGGCACAAATGACTTCATTTTGATGTCCATGATTTTTACACCTTGTCATGA--GTTTAATATAGATGCTTTTATGCTTAT
s HiC_scaffold_1 123874070 310 + 233722169 TCTTTGG-CCACAGTGATTAATAATGAGTGACACCAGTTTGAGGTTGGATACACAGTTGTTGAGCAAATGTTCTTATAGaagtacttcttttaaaaaaataagattacaGTGGTCTCTGTACACACAGGGGCGGCCCTGGGAGAATCTTTTGTGATAGCTACTATCAGACAATTATGTATAAGAACCCTTCCTTCAACATGGCTggctttatttacttttgttactTGGAT-TGATACAAGTGACTCCATTTTGATTCtggcaatttttatattttttcacacTTGTtagatgtggttttttttgtttttgt

a score=6279
s chr3           138519179 378 + 160039680 aaaattacaggcagctattgtttt-ggaccaatttcctacactggaccccagca---------------------acagtccatcataccaaGGTTCCGAGTCACCCTAATGAAGCTGAGCTGTTTACCTAATCTCTAGAGAAATCGGGACCTGAGAGATAAGGGCCCAATTT-CCAAA-AGACCAGACTGAGGTAGGACGATAGTGAGCTCTTCCTACTTTAATCCTTCCAC-------------TGAAATGGACTGAGCTTGTCA-----GTTCCTATTTCCACTTCCTGTCTCACGTGGAAAATAACTCTGAATAACTGCTTCTTCAGTCTGCTTCTTCCCTGTT-TCTGTTTTCATCGGCCC----ATGTCTATGAA-------TCATTTGTTTCATCCATCGGAGAAGTC---CTGTTTTATAGAATGAA
s HiC_scaffold_1  83819966 425 + 233722169 AAAATTACAGTAGACCACTGTTTTTGAACTAAACTCCTGCCCTGGGCACCAACAGGCAGggctaaaaatcaaaatagagtcaCTCACACTGAAGTTCCACATCACCAGCCTGAAACTAAGCTGTTTATCTGACTTTCCAAGAAATCAGGATTAGAGAGATAGCAGCCAAATTCGCCAAACAGGCCCATTTCAATTGACACGATAAAG---TCCTTCTGCAGTAAccctaatacacacacacaaaagtgacCTGAAGTTAGCTAATcaattatgtttctgttg-catgcCCTGCTTTACAGGGGAGTT---TTGAAAtaattgcttttt---tgtatttttatattgttgtCTGTTCCCTTCAGTCATTTGCTGTCCATAAAATGAAACTCTTGTGCTCAGCTCAATGGCACACTCATTCTAGTTTATGAAATGAA

a score=8121
s chr3           138579747 142 + 160039680 ACTATATTTATGTACAGAGAACTTAGCAGTGCACATTTAACCCAGTTTAGTGACGAGTTCTTTAGCTTTTGCCTTT-CCAGCTTGGCAGTGTGAGCCACAGACTTAGGACCCAAGATGCCGCCTCTCCCGCGGCGACAGATCT
s HiC_scaffold_1 194457630 141 + 233722169 attgtttttatgtacaAAACACCAA--AGAGCACGCTTAGCCCAGTTTAGTGGCAAGCTCTTTAGCCTTTGCCTTTTCCAGCTTGGCGATGCGAGCCACAGATTTGGGGCCCAGGACGTTGCCTCCCCAGTGACGACGGATCT

a score=24663
s chr3           138579749 589 + 160039680 TATATTTATGTACAGAGAACTTAGCAGTGCACATTTAACCCAGTTTAGTGACGAGTTCTTTAGCTTTTGC-CTTTCCAGCTTGGCA-GTGTGAGCCACAGACTTAGGACCCAAGATGCCGCCTCTCCCGCGGCGACAGATCTCGTCATATCTGCCATTATCATTGCTCTTAATATCTTCCAACAGCTTAGCCAGAGCACCCTTGTCTTCCGAGTTAACCTGTGTGAAGGCAACAGTGGTGCATGTCTTCCTGTGGACCAGGTACCCCAGCCTAGCCTTTCCCTTGATGATGCAGTAGGGCACCCCCATCTTTCGACACAGGGCAGGCAGGAAAACCACCAGCTCAGAGGGATCTACATCACGGGCAGTCACCACCAGCTGAGCCTTCTTGTTCTCCACCAAGGTGGTGACTGTATTGACTCCTGCTCGAAGGACAGGTGGTCACTTAGTTGGGACATCCCCTTTGCCAGCAGCTTTCTTCTCAGCATGGGCCAGTAGCCT--TTGCTGCTTCTGCTCTGTCTATGGCCTGTACTTGTGGGACGACTTAAGCAACCGGGTACCTGCTTGCCAGTCTAGATTC-GGGTGAACTGGT
s HiC_scaffold_1  62307242 531 + 233722169 tatttttatgtacaGAAAACTCAGGAGTTCAC--TTAGCCCAGTTTAGTGGCAAGCTCTTTAGTCTTTGTGTTTTCCAGCGTGGTTTATGTGAGTCACTGATCTAGGACCCAGGACAGTGCCTCTTCAGTGCCGGCAGATCTTAGAGTATCTGTCGTTGTATTTGGTCCTGGTCACCTCCACCAGTTTAGCCAGTGTGTCTTTGTTCTC--AGTTGATTTGTGTGAAGGTAGCAGTGATGCAGGTCTTC-TGTGGACCAGACACCC-AGCCTGGCCTTCTCCTTGATGATGCAGTAAGGGACCCCCATCTTTTGACAC-GGGCAGGCAGGAACACAACCAGCTCGGTGGGGTCCATGTCGTGTGCAGTCACCACTAGCTGAGCCTTCCTACTCTCCA-----------------------------------------GGTCCCCAGGT---------CTCCTTGCCAGCAGCTTTCTTCTCAGCCTGGGCCAGCTGCCTCGCTTCTTCTCTTGCTTAGTCTCTGCTCTGTACTTGTGGGCGAGATGAAGCAGCTGGGTAGCT------CAGGCCACGTCCTGGGTGAAttggt

a score=4275
s chr3           138579885 97 + 160039680 ATCTCGTCATATCTGCCATTATCATTGCTCTTAATATCTTCCAACAGCTTAGCCAGAGCACCCTTGTCTTCCGAGTTAACCTGTGTGAAGGCAACAG
s HiC_scaffold_1 194457958 94 + 233722169 ACCTCGTCATATCTGTCATTGTAGTTGGTCCTGATTGCCTCCACCAACTTGGCCAGTGCTCCCTTGTCCTCC---CTAACAAGGGGGGAGGGGACAG

a score=10913
s chr3           138579952 163 + 160039680 CTTCCGAGTTAACCTGTGTGAAGGCAACAGTGGTGCATGTCTTCCTGTGGACCAGGTACCCCAGCCTAGCCTTTCCCTTGATGATGCAGTAGGGCACCCCCATCTTTCGACACAGGGCAGGCAGGAAAACCACCAGCT--CAGAGGGATCTACATCACGGGCAGT
s HiC_scaffold_1 194458234 165 + 233722169 CTTACGAGTTGACTTGTGTGAAGGCGACAGTGGTGCAGGTTTTCCTGTGGACCAGGCGCCCCAGCCTGGCCTTCCCCTTGATGATGCAGTAAGGGACCCCCATCTTGCGACACAGGGCAGGCAGGAACACAACCAGCTGCAAGAGGGGAATGGCTGAAGAGCAGT

a score=5589
s chr3           138580076  95 + 160039680 GAAAACCACCAG------CTCAGAGGGATCTACATCACGGGCAGTCACCACCAGCTGAGCCTTCTTGTTCTCCACCAAGGTGGTGACTGTATTGACTCCTG
s HiC_scaffold_1 194458827 101 + 233722169 GAAACCCAGCAGACCTACCTCAATGGGGTCCACGTCGTGTGCGATCACCACTAGCTGAGCCTTCTTGTTCTCCACTAGAGTGGTGACAGTATTAACACCTG

a score=11784
s chr3           138580167 309 + 160039680 CCTGCTCGAAGGACAGGTGGTCACTTAGTTGGGACATCCCCTTTGCCAGCAGCTTTCTTCTCAGCATGGGCCAGTAGCCTTTGCTGCTTCT---GCTCTGTCTATGGCCTGTACTTGTGGGACGACTTAAGCAACCGGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGCTTGCCAGTCTA-GATTCGGGTGAACTGGTTAATGGCAAGTGGTACTTTGAGCCGCTTATAGAGGATGGTCCTTTGCTGCTGCTGCCTGAAGTAGCAGGACCGTTTGACGAAGCGTTTGAGATCTCT-TTGGGCTGGATGTCCTGTGCAATGCTGAAGTTCTTGGGCCT
s HiC_scaffold_1 194459095 485 + 233722169 CCTGCTCGGAGGACGGGAGGTCTCTTAGTGGGGACGTCCCCCTTGCCAGCAGCCTTCTTCTCAGCCCGGGCCAGAAGCCTCTGCTTCTTCTCTTGCTTCGTCTCTGGTCTATACTTGTGGGCGAGCTTAAGCAGCTGGGTAGCTAGGAAAGCATCCTTCCATTAGGCCCTGCAGTTTCAGGTCCAGTCTGTCGCTTAGCATGATGTAAATTCGAAGTCCCTAGCAGTACTACAGGTTGAGCAGAAGCCCACAGGGCTACACACAGGGCCATGCACCACCTTTCCAGTTAGGCTGATTCCACACCCCCAAAGCCCACCTGTTTGGCGGTCCAAGGCCTGGGTGAACTGGTTGATCGCAGGGGGCACCTTCAGCCGCTTATACAGGATCGCCCTCTGTCGCTGCAGTCGGATGTAGCGGGGCCATTTGACGAAGCGGGTGAGATCTCTCTTGGGCTGAATGTCCTGTCCTA---GGAAGAGTTTGGGACT

a score=11405
s chr3           138580331 257 + 160039680 AACTGGTTAATGGCAAGTGGTACTTTGAGCCGCTTATAGAGGATGGTCCTTTGCTGCTGCTGCCTGAAGTAGCAGGACCGTTTGACGAAGCGTTTGAGATCTCT-TTGGGCTGGATGTCCTGTGCAATGCTGAAGTTCTTGGGCCTTTTCTCAAACAAAGGATTGGCCACTTTTTTGGCCTCCTAGTACTTCACAATGGCGGGGGCCAGGGCCACCTTCTTCCCCTTGGCCTTC--------TGGCACCTTGCTCGGCTGGAGGAG
s HiC_scaffold_1  62308105 254 + 233722169 aactggtTAATCACAGGTGGCACCTTCAGCTGCCTACACAGGATTGCC----ACTGTCACTGC-------AGCAGGGCCATTTGACAAAGTGGGTGAGAGCTCTCTTGGGCTGGCTGTCCTGTCCAATGCCAGAGTTCTTTGACCTCTTCTTAGACAGGGAATGTATCACCTTCTTGGCCTCCT-GCTTTTTATGACAGCAGGAGGCAGGGCCACTTTTTTCCCCTTGGCCTTCTTCCTTTTTGTCACCTTGGGCAGCTGACAgag

a score=7801
s chr3           138580454 141 + 160039680 CAATGCTGAAGTTCTTGGGCCTTTTCTCAAACAAAGGATTGGCCACTTTTTTGGCCTCCTAGTACTTCACAATGGCGGGGGCCAGGGCCACCTTCTTCCCCTTGGCCTTCTGGCACCTTGCTCGGCTGGAGGAGAAAGAAA
s HiC_scaffold_1 194460179 136 + 233722169 CGATGCCAAAGTTCTTGGGCCTCTTCTCAAAGAGCGGATTTACCACCTTCTTGGCCTCCTGCTTCTTCACGACAGCAGGGGCCGGTGCCACCTTCTTCCCCTTGGCTTTCT--TTCCTT--TCGGCtgg-gcagagagaaa

a score=3566
s chr3           138601134 64 + 160039680 AAATCGGTTCGGATCTGTGGGACTGTGACCTTCATCTTTCAGATGGTAATCTATGTGGGAGTTG
s HiC_scaffold_1 224656035 59 + 233722169 AAAGCAGTGCGGATTTGCGGAACTGTGACCTTCATCTTCCAGATGGTGA-----GTGGAAGGTG

a score=3684
s chr3           138601178 87 + 160039680 GGTAATCTATGTGGGAGTTGTTCTCTATGCACCATCCTTGGCCCTTAGTGCA-GTGAGTGGATTTGATTTATGGCTGTCAGTGCTGGC
s HiC_scaffold_1 224656338 88 + 233722169 GGTGATTTACATGGGGGTTGTGCTCTACGCGCCGTCCTTGGCCCTCAATGCAGGTGAGGAGTCACAGCCCCTGGCTTCCAGCTGTGGC

a score=4752
s chr3           138601226 74 + 160039680 TGCAGTGAGTGGATTTGATTTATGGCTGTCAGTGCTGGCCCTAGGAATTGTCTGCAACATCTACCCAGCACTGG
s HiC_scaffold_1 224656770 74 + 233722169 TACAGTGACAGGCTTTGATCTGTGGCTGTCAGTGCTGACCCTGGGCATTGTCTGCACCATCTACACTGCCCTGG

a score=9988
s chr3           138601275 193 + 160039680 GTCTGCAACATCTACCCAGCACTGGGTGGACTGGAGGCTGTCATCTGTGTCATCAGGCTGTGATAGATGTGTTCCAAACGCTGGTTGTGTTCCTAGGGCAGCTGGTGGTTATCACTGTAAGAGCGGCCAGAGTGGGTGGCTTGGGGCATGTATGGGATGTGGCTCCACAGCATAGCCTCATCCCTGAGATTGA
s HiC_scaffold_1 224657293 177 + 233722169 GTGTGCTGTCTTTTCCCTGCA--GGGTGGGCTGAAGGCTGTCATCTG--------------GACAGATGTGTTCCAGACACTGGTCATGTTCCTAGGGCAGGTGGCTGTTATTATTGTGGGGTCTGCCAAAGTGGGCGGCATGGGGCGTGTATGGGATGTTGCTTCCCAGCACGGCCTCATCTCTGGGATCGA

a score=10548
s chr3           138601466 264 + 160039680 GATCCTGACCCCTTTGTGCGTCATACTTTCAGGACTTTGGCCTTTGGAGGTGTCCTCATGATGCTCTCCTCCTATGGACTGAATCAGGCTCAGGTGCAGCGCTACCTCGGTTCCCACTCAGAGACGGCTGCTGTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTGCTATGCAGTCTTTCCTTGCCAGCTAGTGGCGCTCTGCATGAGCTGCCTCAATGGTCTGGCCATGTTTGCCTATCATAAGGAGTACAGCATAGGCCG-CAGCAAGAGCAAGCAGCCCCTGACC
s HiC_scaffold_1 224657865 446 + 233722169 GATCCGGACCCCTTTGTGCGGCACACCTTCTGGACCTTGGCCTTTGGGGGCGTCTTCATGATGCTTGCCTTGTATGGAGTGAATCAGGCTCAGGTGCAACGCTACCTCAGTGCCCACACCGAGAAGGCTGCTGTTCTGTGAGTGCAGGGGCAGGAAGCCGGGGCAGGGATTAGGAGGGGAGCCCCAAGGGCAGTTGGGGTGGAACAGGGTGCGCCTGTGTCCACTGGGGCTAGCACATGGGCCTCCTTTCTGAAGGAGCAGGAGGACAAGCCTGAATGTCTCATCACTGTTCCTCCCCAACTCTGGCCTCCTTTGTAGTTCCTGCTATGCGGTGTTCCCCTGCCAGCAAATCGTGCTCTGCATAAGCTGCCTCATTGGCCTGGTCATGTTTGCCTATTACCAGGAGTTTCCCTTGAGCAGCCAGCAGGCTCAGGCATCTCCTGACC

a score=5977
s chr3           138601697 131 + 160039680 ATAGGCCGCAGCAAGAGCAAGCAGCCCCTGA---------------------CCTCTAGTTTGTCTTCTATTTTGT-------CTCCTGAAAGACACGCCAGGGCTGCCTGGGCTCTTCGTTGCCTGCCTCTTCAGTGGCTCTCTCTGCACTCACTTCA
s HiC_scaffold_1 224658758 155 + 233722169 ATAGACCACAGCGGGAGCCA----CCCCTGAAGAGAGctgtgctctgctctgcctgCAGTTTGTCCTCTATTTTGTGATGGACCTCCTGAGAGGGATTCCGGGCCTGCCTGGACTCTTCATTGCCTGCCTCTTCAGCGGCTCCCTCAGGTACCCCTTCA

a score=6626
s chr3           138601812 104 + 160039680 CTCTGCACTCACTTCACTGGCAACTGTCACGATGGAAGACCTGACCCAGGCCTGGTTCCCTCAGTTAACTGAAACCCGTGCCATCATGCTTTCTCGAAGCCTTG
s HiC_scaffold_1 224659310 104 + 233722169 CTCTGCTTTTAATTCATTAGCAACCGTCACAATGGAAGACCTGATTCAACCCTGGTTCCCTAGGTTTTCTGAAACCCGGGCCATCATGCTTTCTAGAAGCATCG

a score=4007
s chr3           138601901 80 + 160039680 TTTCTCGAAGCCTTGCCTTTGGGCTAGTTGGCCTGGGAATGGCCTATATTTCCTCTCATCCGGGATCAGTGCTCCGGGCA
s HiC_scaffold_1 224659732 80 + 233722169 TTTTCCCAGCCTTTGGCTACGGGCTGCTTTGTTTGGGAATGGCCTATATTTCCTCCCATTTGGGACCCATGCTGCAGGTA

a score=7629
s chr3           138601973 371 + 160039680 TCCGGGCAGCACTCAGTATCTCTGGCATGGTGGGAGGGCCACTGTTGGGACTCTTCGGCCTTGGGATGTTCGTTCCATGTGCCACCCCTCTTG---------------------------------------------------------------------------------------------------------------GTGCTATTGTGGGCCTGTTGACAGGACGCACCATGGCCTTCTGGATCGGCAGTGGGAGCACAGTAAGCAGGATGAGTTCTGCTGCGCCATCCCCTCCCTTTCATGGATCCAGCTCCTTCCTGCCCAGCAATCTGTCT----CCACTGTGACCACCCTGATGCCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACCCTGT-----------------------------------CCAAGCCCACAGGACTGCAGCAGTTCTGTTCCCTGTCCTATGTATGGTTGGGTGCGCACAACTCCACCACAGTCATTGTAGCGGGCCTGATAGTCTGTCTGCTCACTG
s HiC_scaffold_1 224660182 789 + 233722169 TCCAGGCAGCGCTCAGTATCTTCGGCATGGTTGGGGGGCCGTTGCTTGGACTCTTCTGCCTTGGAATATTCTTTCCTTGTGCCAACCCTCCTGTGAGTAACACATCTGCTTCCACAGTCCCATGCACAGGGTGCTTCTGGGAATTACTGTCAAGGTTTGGTGAGTTGGCCTGCTGACAGGAAAACCTGCCATGTCTCTGGCAGGGTGCCATCGTGGGCCTGTTGGCTGGACTCATCATGGCCTTCTGGGTCGGCATCGGGAGTCTGGTGACCAGCATGGGGTCAGGCACAGCAACCTCTTCCCTTAACGTGTCCAACTTCTT---GCCCAGCAATCTGACCAGCGCAGCTGTGACCACCATGGTGCCCTTGACCAACCTCTCCAAGTGAGTTGGGGATTATTCCTTTTCCACTTGGGGCAGTAGCTCGATGATTTGTTCGTTCCAGGGTTCcacttgcagttcaggctgaccttgaatgcctgcctcagcttcctaagcgCTGGGATCATAGGAGCGCACCAACAGGCCCTAACAGCTTCCTTTTGAGAGACTTCACAGGGTCCTTGCAAAGGGGTCAGATGCCTCAGAGAAGTGTTGGGTTCTAAGGCCAGAAAAGTGGGTGGAGCCCAGAGCTTGAGGCTGTCCTGTGACACATTACTAACTGTCCTCATCCCTGTGCTCTCCCAGGCCCACAGGCTTACAGCGCTTCTATTCCCTGTCGTATTTGTGGTACAGCGCTCACAACTCCACCACTGTCATCGTGGTGGGCCTGATCGTCAGTCTGCTCACTG

a score=5734
s chr3           138602348 104 + 160039680 ATGCGGGGCCGGCCCCTAAACCCCGGCACCATTTACCCTGT--TGCCAAAGCTCCTCCCATTCCTGCTCCTATCCTGCCAGAAGTAGCTTTGCTGGAGAAGCCAca
s HiC_scaffold_1 224710503 106 + 233722169 ATTCGGGGCCGGACCCTGAACCCTCAGACCATTTACCCCGTGCTGCCGAAACTGCTCGCCCTCCTCCCCTTGTCCTGTCAGAAGCGGCTTTGCGGCAGAAGCCACA

a score=5734
s chr3           138602348 104 + 160039680 ATGCGGGGCCGGCCCCTAAACCCCGGCACCATTTACCCTGT--TGCCAAAGCTCCTCCCATTCCTGCTCCTATCCTGCCAGAAGTAGCTTTGCTGGAGAAGCCAca
s HiC_scaffold_1 224661173 106 + 233722169 ATTCGGGGCCGGACCCTGAACCCTCAGACCATTTACCCCGTGCTGCCGAAACTGCTCGCCCTCCTCCCCTTGTCCTGTCAGAAGCGGCTTTGCGGCAGAAGCCACA

a score=7008
s chr3           138604075 316 + 160039680 TTTAGTCTTC-TTCACGATCACAAACTTAACTCTGCAATCTAACTAACTAGACTTTGAGGGGAATTAGGAAAATATGGAACCCAAAGAACTTCAGGGAGAACCACGGTTATGGTTGCAGACAGAGTCCCCG-CACTCTCCTGAGCTACAGAAGGCATGGTCTGCTCTAGGTAATATGTCTGAAGAAT-TAGAGTTGCTCAAGTTGGCAATGGTGATCTTCTTGCCATTCCTCTAACCCAAATGCTCCATGGCTTCCATAATGCTCACGCCTTCTTTCACCTTCCCAAAGACAACATGCTCGCCA-----TCtgtcttggttatg
s HiC_scaffold_1 168951984 301 + 233722169 TTTAGTTTTAATTCATAGCCATAAATTTAACACTGCAATCCTGCTCA--------GGAGGGGAGCAAAGAAAACATGCAAACCAAAGAACTGCAGTGAGACAGTGGGATTTTTGAGCAGGTAGGGTGCACGGTGTACTCCCAAGCTATAGGA---ATGATCTG-----------GTGGTTGCAGTGCACACaattcaccatgttacagttgttCACACTCTT-CTGTTCCTGGATCTGACTTGCTCCATGATCTTCGCAGTGTTCACACCCTCTTTCATCTTTCCAAAGATTACGTGCTTGCCAACCACTCAGTCTTGGTAGTg

a score=15504
s chr3           138604716 410 + 160039680 TCTTGGCAGTGCATATGAAAAACTGGAAAC---TGTGTTTGGTCCAGCATTTTCCATGGACAAGATGCCAGGACCTGTATGCTTCAGAATGAAGTCTTCATTCTTAAATTTCTCCCCGTAGATAGATGGACCTGCCACCAGTGGCATCATGGCGTGTGAAGTCGCCACTCTCGCATATGAATCCTGGACTAATTCTGCGAAAGGAGGAACCCTTCTATCCAAGTCCTTTCTC-CCAATGCTCAGAGCATGAAA-GTTTTCTGCTGTCTTTGGAA------CTGCAAACAGCTCGAAGGAGATGCGGCCCAAAGGCTCACCATCAGCCAAGATGTCAAATAACTCAGTGGGGTTGAGCATCACTGCAGCAAGCAGTAAT--AGTGGACAGAT----GCAGCTGCAGAGCTTCGATTTCCTCTTTTATT
s HiC_scaffold_1  72461000 410 + 233722169 TTTTGGTAATGCAGATGAAAAACTGAAACCCTTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCACT---GAATTTCTCCT-----ATAGAC--ACTTGCCACCAGTGGCACTGTGGCCTGTGACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAACCTAatgttttctctccagtgttcacagcaaaaaatgttttctgttgtctttggAAGTTTGTCTGAAAATAGCTCAAATGAGATGCAGCCCAAGGGCTTGCCAT-GGGCGTGATATCAAG-GACACACTGGAGTTGACCACAGTTG--GCAGGCAACAACTAAATAGGAAGGTAGCAGCATCCACAAAGCc---atttctgatttaatt

a score=16956
s chr3           138828678 504 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCACAGGCTGGCGCTTCAGCTGCACCCAAGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCACTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGTCCACGGCATGCTGGATAACATTGTAGA--CTCTTACGGTTTTGCCATGGTAGCACTTATGGGGCATTCCTTTTTTAACAGTGCGCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATCCGCATGTATGTGGCCAAAGGAACAACGCCATG-TTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCCTTTGTGTTCCGTCATTTTGGCGAGTTACTGGAAGA
s HiC_scaffold_1  32421026 435 + 233722169 TTATTCCTTGAATTCATAGGGAGT------------CTCCAGCTCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTGGGCTGCA--GGctggcatttc-----------------tttctttttgtcatcttttttctTG---------------ATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGA-TCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGGA---CATCTCTGGCATTC--TTATGGACAGTACCCACTCCCTTG---TCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCT--CAggt--------tttttcccttt-------ctcatttcTGCAAATTAGTAGAAGA

a score=4362
s chr3           138828678 68 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGT
s HiC_scaffold_1  77422670 68 + 233722169 ttaTGCCATGAGCTCATAGGGAACAGGCTCCAACAACTTAGGCTCCTTCCCTTTGGTGCTCACAAAGT

a score=29855
s chr3           138828678 513 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCT-CTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCACAGGCTGGCGCTTCAGCTGCACCCAAGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCACTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGTCCACGGCATGCTGGATAACATTGTAGACTCTTA-CGGTTTTGCCATGGTAGCACTTATGGGGCATTCCTTTTTTAACAGTGCGCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATCCGCATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCCTTTGTGTTCCGTCATTTTGGCGAGTTACTGGAAGATGGCTGCCc
s HiC_scaffold_1  80725745 511 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGGGGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATATAG--TAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCC-AAGAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTT-CATCATTTTGGCAAATTATTGGAAGATGGCAGTTC

a score=30686
s chr3           138828678 521 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCACAGGCTGGCGCTTCAGCTGCACCCAAGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCACTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGTCCACGGCATGCTGGATAACATTGTAGACTCTTACG----GTTTTGCCATGGTAGCACTTATGGGGCATTCCTTTTTTAACAGTGCGCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATCCGCATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCCTTTGTGTTCCGTCATTTTGGCGAGTTACTGGAAGATGG-----CTGCCccaaggcaa
s HiC_scaffold_1 178274457 529 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAGGGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTT-CATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGccaaaagcaa

a score=29521
s chr3           138828679 515 + 160039680 TAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCACAGGCTGGCGCTTCAGCTGCACCCAAGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCACTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGTCCACGGCATGCTGGATAACATTGTAGACTCTTACGGTTTTGCCATGGTAGCACTTATGGGGCATTCCTTTTTTAACAGTGCGCATTCCCTTGATGTCTACAATATCACC-CTTCTTGTAGATCCGCATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCCTTTGTGTTCCGTCATTTTGGCGAGTTACTGGAAGATGGCTGCCccaa
s HiC_scaffold_1  16174762 505 + 233722169 taTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcagggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCT--GAGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTT-CATCATTTTGGCAAATTACTGGAAGATGACAGTTCTGA

a score=12747
s chr3           138828870 316 + 160039680 CTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGTCCACGGCATGCTGGATAACATTGTAGACTCTTACGGTTTTGCCATGGTAGCACTTATGGGGCATTCCTTTTTTAACAGTGCGCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATCCGCATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCCTTTGTGTTCCGTCATTTTGGCGAGTTACTGGAAGATGGC
s HiC_scaffold_1  99840708 306 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCA-------AACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACT-GATCAATTCAGCAAATTAC--AAAGATGAC

a score=4248
s chr3           139110442 269 + 160039680 TCATGACAGATTTACTTaaaaaaaaaaaacaaaaaacaaaaaacaaaTCCTTCATCTCATATTTTCCTTCAACAGTTT---TGTGTAGATATGTTCAGATATATAAATACTACATATGTTACATAGTATATTTATGTTATACCTGACTATATTATTGAGCACAATAACACGTTGTACAGGTTGGCAGCCTAGGAGCAAGTGACC--------TAGCCTGGCTGAATGGTAGACTATCCCATTTAGGTTTGTGTGACTACACTATGCT--GTTCCCACAATGA
s HiC_scaffold_1   5358819 262 + 233722169 TTATGACAGTGGTCCT---ATAAGAAGATAATAGAACTGAAAATG--TTTATCACCTggtatttttactgtgtcttttctctgtttaaatacattttgataGACAAATATT-----TGCCA----------TTATGTTACAGTTGCCTACAATACCAAGCACAGTAACATGGTCTTTAGGTTTGTAGCCTAGGAGCATTAGACTATACCACAGAGCTTGTGTGTGTAGCTGGCTGTACCCCATAGCCTTGTACAAATGCGCTCTGTGAAGTTTGTACAGTGA

a score=15590
s chr3           139128329 447 + 160039680 TCTGCTCATAACCCCAGTCATGGGCACGCGACTTATAATCAACCAGTTCTTCTGACTTAAACCATAGACT----------------CTCCAC----TGAATCGCTGCCACAAGTGATGTTCCTGCCACCTTGAATGCAAGATTCCCCACGAATAGTGCCTGGTTTAGAATATGCTGGATTGGTCTCTCGCAACATCACTCGGCCTCTTTTCACCAAATTGAGCCCCTCCCAGACCATGGCACCTATGTGTCCTGAGTTCAAGTGCT---TCAACGGCCCCGGGAAGAAAGGATGGTCTTTCCAGTCAACATAGCGCTGCTTCAGATGTTCCTCAGAAGCCCAAAGGAACTTCACGGCCATCAGGCAGAACCTCTTCTCCTTGAAGCGCTTGATGATCCCTCCCACCAGGCCATGCTGCACGCCATCGAACTTGATGGCAATGAAGGTATGCTTGAGGCTGGCCAAGGTAC
s HiC_scaffold_1  98392911 457 + 233722169 TCTATTCATAGATCCAGTTGTAAGCACTGCACCTGTAGTCA-CCAGCTCCTCAGGCTTAAACCACAGGCTGATCTCCTTTTCAGCTCTTCACCGAGTGAGTCACTGCAGTGGACAATGTTCCTGCCGACT-GAATGCACAAGTCTCCGCGGATGGCGCCTAGCTTGGAGTCCTCAGGGTTGGCCTCACCCAGCACCGCTTGGCC-CGCCTTACCACGTTCAGCCCCTCCTAGACCCTGGCCACG----GCCCCGAGTGCACATACTGACTGCACCAGACCGGGCAGAAGGGCCGCACCTTCAGGTCGCTGAAGTGCTGCTTCAGGTGCTCCTCCGAGGCCTGGATGAACTTCATGGCCACCAGGCAAAGCC-CTTCTGCTCAAACCGCTTGATGGTCTCGCACACTAG-----GCTGCACGCAGAAGGGCTTGATGGCAATGAACGCGCGCTCCAGCTTGGCAAAGCTGC

a score=5203
s chr3           139151329 134 + 160039680 CACAGAGATAGATGCTGCTGA-----GAAGACTCTACAAATTGGTAAAAGACATGACCTGGCACTGGGCAAAGAGATACTTTGGTGGTGGTGGTGCTGTTCTTGCATCAGTCAGGGGCAGAGTTGATGGCAGTCTTCtg
s HiC_scaffold_1 195809879 132 + 233722169 cagagaggcaactgttgatggcagtggaagac---agaaaaagcaaaaagaccc-CCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTG---TTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTG

a score=5228
s chr3           139340069 299 + 160039680 CCTATTGTGAAACTCTAAA----------TCTGAAAGTATAACAC-TTTTGAGTGCCAAT-CATTGTTACAAGTGGAAAATTCTATTGTTGATGCCATGCGTCAG-GTTACAATAAAAATACAGGTATGTTAAAATTT--GTATAAAGTTACTTTCAGGCTATGTGTACAAACCATATAAAAAATAAAACTACAGTTTTTTG-TTGGACTTAGGTCCTATC---------------TATAGTATATCTCCTTGTGTACACACATACTCCAA------------------TTTCTCTGAACTCAGAAAATTCAAA--------ACTTGAGGCATATCTGATGCCAGTATTTAAGAAA
s HiC_scaffold_1  51851179 335 + 233722169 CCTAATCtaaatttccaaaatgcaaaatttttcaaaatctgaCACATTTCAAGCTCCAAGATGATGACACAAGTGGAAAACCCCAT-------ACCATGCAACTTTATTTcaacaaaatt--------gttaaaaatcTAGCATAAAAGTACCTTCAAGCTACGTGTATAAAACATATATGAAACATAGATA-AGTTTTATGTTTAGACTTTGATCCCATCCCTAATATGCGTATGCATAGTAtgtcattatgtatatgtaaGTAGTCTAAAATAATTGAAGTCCCAAGTATCTGTGATCTCAAGATATTCAGATAAAGGATACTTAACCcatatttg-----ggtttttaaaaaa

a score=7394
s chr3           139411705 449 + 160039680 AGAGAAAACGACAAATATTGCAAGAACAAATGTCAGCCATGAAAAGCTTCCTATCCGTTTGGCAGCTGCCCTGAGATGGGCTGAAATGGCTG-GTACAATACATTCAGATGCTATGGAGGAAGAAGCAGG------------CCTGTGGGGTGTGTTTCCCCTGAGGGTTCCCCGATGGCAGTAATGCTACGTCTCTGGGACCCAC---AGGTCTGTGCCTGACCCAGTCTGAAAATGCTCAAAGGTTGCAATCCTAGGCCAAGAGAAGCTATGCAACATA-AGATGTATTGCTGTGCATTCTGGTGG----------CCAGTTTCTCTGTGTGCAACT-CGG--------------------------GGCATGCCTTTCCATTCTGGTGTTAGCCAGCT-AAGTTTGTCCAAAGTCATTTCAGTCCATTTCAGAGGAGAGAGGGGATTGTCACTGTGGCATTCCGTGGGTCTTGAATTCTTACTGGGTTGAGGAAGATTCCA
s HiC_scaffold_1 218703574 481 + 233722169 aaagaagattccagaaattgcACAAA---------ACTGTGGAAGGTCTC---------TGGGAGGAACCATCAAGTAAACTATGATGGGTGTGTGCAATGCTTCCAGAAGCTGTGGAGGAAACAGCAGGAGGAAGCAGCAATGCATACAATGTGCTTTCTTCAAGGATAAGCTGCTGACCATATCATCAGCTGTCTGTGGCCCACTGTGGCTCCTTACCCAACGTAACCCACTAACATTGGCAAGCTGAGATACAAGACCACACAAACTTATGGCATAGATAGGCATCCTG-TGTACATCCTCGTGGTTGCAAACACCCAGTTCCAGCTGGTACAGCTACGGCAAACCTGTCCAACTGGTACAGCTACGGCAAACCTGTCCATCACGGTGCTAACCAGTTGAAGTTTGCTCAGAGCCTTTT--GCCTGTTGCCAAGGAGAGTTGGA--TGCCACTGTGGGGCTCCAACAGTCCTAAATTCTTACTGGGTTGATAAAGATTCCA

a score=6992
s chr3           140317494 256 + 160039680 GACATTCTAAGTTCAACA------ATGTTTTAGATCATTTGAACACCAACATGACTTCAGAGGTGGAAGCTTTCATACCTGGCCATGTGTGTTGGCTTGTTGTCAATAGCCAAGCACACTAAATA---TGTATGCACATCTAATTTTAGGGTAGGTCTATAAAGTACTGATGAAAGACAAATGGATTTTTTACT----CCTGATTTCCAACACCAAGATAGCCCATTATGTATGTTATCATTTCAGAAACTGAAAAACTGCAAATATCT
s HiC_scaffold_1  66334451 259 + 233722169 GAAAATCCAAGCTCTACATACTCAAAACTCCAAAATATTTAAGTATGAACATGATGCCCCAATTGGAAAATTTCGCACCTGACCTCATGTGATGGGTTGTTGTCAAAATGCAAATGCACTAAAAACATTGTATAAA---CTACTTGTGGGCTATATGTATAAAGTATATTTGAAACATAAATCAATTTTATACTTAGACTTGGCTTCCATCTCCAAGATACCTCATTGcatat-------ttgcaaatattaaaaaaattaaaaaatct

a score=6548
s chr3           140317524 208 + 160039680 ATTTGAACACCAACATGACTTCAGAGGTGGAAGCTTTCATACCTGGCCATGTGTGTTGGCTTGTTGTCAATAGCCAAGCACACTAAATATG-TATGCACATCTAATTTTAGGGTAGGTCTATAAAGTACTGATGAAAGACAAATGGATTT----TTTACTCCTGATTTCCAACACCAAGATAGCCCATTATG-TATGTTATCATTTCAGAAACT
s HiC_scaffold_1 167548987 212 + 233722169 ATCTGAGCACCAACATGATATCACAGGTGGAAAATTTCACACCTCACCTCACATGATGGATTATAATCAAAACTCAGGCACAGTGAAAATGCTATATAAAATTACTTTGGGGCCATATGTATGAGGTATATATGAA--ACAAGTGAATTTTAAGTTTAGATTTGTATCCCAGCtccaagatatctcattatgttTTGAGACTATTCCAAAAATT

a score=4164
s chr3           140522023 282 + 160039680 TAAACCAGAAAGTCTCATTCACACTTACCAGAATGTAGTCACACACTGCAAGATACTGCCTGGTTTTATGCAGAGTCACAGTGGATGGAATAGCCCCAGGGTGCCATGTGCCATCTGGAGCTATGCTTAAAAGAAAATTGTGCTATATTCTGG-----TCACAATATATAC-------------------------TGTGTAATGAT---------CAATACTTATGC----TGTTATGAACTGTTCACTGTTGAAAGGAATTCATGGCTAAAGACCATTGCCCTGAGTCACAGGCTCTATTGGCTGGAACAGAAGTCAGATAGA
s HiC_scaffold_1  27459904 323 + 233722169 TAAATCCAGATACCTCACTGAAAATCATGAGCCTGTACTCAGGAACTGCAGGATTTTGCCTGGCTCTACTGAGAATCACCTTGGATGAAGTAACTCTAGGCTTTTATGTCAAGCCTTTGATTATTAATGCCACAATCCTATGCCACATCCTGACCAGCTCAGAACTTAGACACTGTCCTTTAATTCACGTTTTCTTTGTGTCATGCTAAGACCATCCACTACTGGTGCATAGTGCTGTGGGT--CTTACTAATGAGGCAGACTCCTGCCCTCGAGCCACTGCAGCCAGACACAAGTGATCCTGGCCCAAACAGAAGTCCAATAGA

a score=11787
s chr3           140871135 413 + 160039680 GTGGCTTTGTTTAAGTGTGAATAAAACACGCCCATAAA-------------TCCTCTGCTACCCAGCCTTGTGTTGGGATTGGTGACTCTGAGAGCCAGCAGTGCGGCTCCTTCTAGCGTGGCTTTGAGGTTCTTAGAGAA---------AACATCCTCAGCACTGGAAGCTTAGTTTCACAAC--------TTCTAGCTCCTTGACA-GGTGAACCAGAAATTTCTT----GAAGCTGCTGGGCAGCATTTGCTTGGGTTTCCTGGTTGCTCCCAAAACACATGCTGGATGTCAGTCAAGTCTGGGTTATGGGAC---------CCTGTTGATGAGGACTCTGGGTT-CTGACAGTT--ACTTAGTTTTGACTTATTAGTGTGACTGATGCCATGGGAAGTTCTTTGTCCTC-TTTTGACAATCTTGAGCTTCACCAGAGCCTGGAGTGCAGTCACAATG
s HiC_scaffold_1 123139405 455 + 233722169 gtggttttatttaaacataaataaa-catgCACAAGAGATATCTACTTGTTTTGTTTGCTGCGTAGCTTGGGATTGGGTTTGGTGACTTGGGTGGCTACCTGATCTGCTCTTTCCATGATGGTCTTGTGGTTCTTGGAGGAGTCGTGGTGAGCAATCTCTGCACAGTAAGATTTTTTGCACATCAGCAGCAACTCCAGCACCTTAACATGGTGCACCAGGAACTTCCTTCCAGAAGCTGATGG-CAGCAtgtgctttgtcttttta-ttgcttCCATACCCTATGTTGGGCATTA---AGATCTGGCCCCTTAAGCTTTCTCACCCCTGTTGTCGATGTCTCTGGGTTTCTGCCAGTTGTACTTAGTTTTGACATATCGTTCTGACTGGTGCCAGATGAACTTCTTTGTCCTCTTTTTGATGATGTTGGGCTTCACAAGGGGTCTGAGGACTGCCATGGTG

a score=6130
s chr3           141856323 148 + 160039680 TGTGTCTGT---TGACTCATATACTAACCTAATGAACTTGACAGCCAAGCCCAGGTCTGCTATGCAGCAAGTTCCATTTTTCTTCACCAGGATGTTTTTACTTTTCAAGTCTCGATGGGCGATTGCTGGCTTGCCTTGAGTGCTAAAGATT
s HiC_scaffold_1 173254154 136 + 233722169 TGTGTCTGTGGCTGAATCATGTCTTA---------------CTGCCAGCCCTAAGTCTGCAATACAGCAGGTCCCATTCTTCTTCACCAAGATGTTCTTTGATTTCAAATCTCTATGTGCAATGGCTGGCTTTCCTAAAGAACCAAAAATT

a score=6941
s chr3           141857402 194 + 160039680 CCCAGAATATTCTCATGCCGCATCAGGACCGTCTGATATATCTCAGTCTCTCGGAACCAGCTGGCTTCCTCCGTGGTGAAGAACACTTTCACAGCCACCTTTTCTCCACGCCACTTTCCCATCCACACCTCGCCATAGCGGCCTTTTCCAATCTGCTTCACCATCTGAATTTGCTTAGCTATTGTCCTTTGGAC
s HiC_scaffold_1 173261882 194 + 233722169 CCCAGGATGTTTTCGTGGCGTAACATCACAGTCTGGTAAATCTCTGCCTCGCGAAACCACGAACGTTCTTCCCTAGAGGAGAATATCTTCACAGCAACTTCTTCTCCCCGCCATTTTCCTCGCCAGACTTCTCCGAATCGCCCTTTGCCAATGCTTTCTTGTAACACAATTGTTCTTGCAATTGTCCTCTGAAC

a score=7347
s chr3           141879218 274 + 160039680 TGCTCTA-TTTTATTATCCTTTTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCAC-----------ATCTCCCTTTTGGAAACATTTCAAATTTGTCATTTTTTGGACTAGGGAT
s HiC_scaffold_1 205537965 279 + 233722169 TGCTTTAGTTTCAGCCTTTTCTCCTGGATTGCATAATATTTGCAGATACATAATAAGAGAGCTTGGGGCTGAGGCCCCAGTCGACACACAAAATTCATTCATCT-TTATATCTTATAAGCATAGTGTGAAGG----TAatttaattcaatatttttagTACTCGTGTGTTTTGACTGTGACCTGTCACATGAAGTCAGATGTAGAATTTTCCACT-GTGGCATCATGTTAGTACTCAGTTTCAGATTTAGGGGTGTTTCAGACAC-TAGCTTTTTGGGTCAGGGAT

a score=7899
s chr3           141879222 275 + 160039680 CTATTTTATTATCCTTTTTAGATTTTTAAAATA------------------TTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGA--GAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACAT-----CTC-----------CCTTTTGGAAACATTTCAAATTTGTCATTTTTTGGACTAGGGATACTAG
s HiC_scaffold_1  61991967 301 + 233722169 CCATTTGATTGACCCTTTTTGGTGATTAGAGCACAGGtcttaaggatttttttcttatatcctTGA---GATATCCTGGGAATGGGACCAAAGTCCAAATACAAACTTTATTTATGTGTCAGGTAAACTGTACCCATAGCCTGAAGgca------tttttatgatatttctaGTGTGCTTGCACTTTGACTGTGACCTGTCATGTGAGATCAGGTGTGGAATTTTTTACTTGTGGGGTCATATTCATGCTCAAAAAGGCAcattattttgaagtatttcaga-ttgcAAGTTTTTAGATGGGGGATGCTAG

a score=6965
s chr3           141879223 247 + 160039680 TATTTTATTATCCTTTTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCC------TTTTGGA------AACATTTCAAATT
s HiC_scaffold_1 131684869 243 + 233722169 tgttttataattctttttcagattttggaatacaCACACAGTC---ATGAGATATCTTGGGCATGGGAACCATATCTAAGCATGAAATTCATCTCTGTTTCATGTTTGCATTATGCACGTAGCCTGAAGTTAACTTTCCACAACATTCTTAGAGCACCTGCATTTTGACTGTGACCTGTTGTAGGAA-TCAGGTGTGG--ATTTTC----------TGTcatctttcaaaaaattttggACTTTGGAACATTTCAATTT

a score=7400
s chr3           141879234 261 + 160039680 CCTTTTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTG----TCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCCTTTTGGAAACATTTCAAA-TTTGTCATTTTTTGGACTAGGGATACT
s HiC_scaffold_1  34376159 258 + 233722169 ccttttcagatttt-ggaatatctgCATATACATAATGAGACAGcctgaggatgggacccaagtctaaacacaaCATTCCCTTACGTTTCATCCGCATCTTACGTACCAGCCTCCAGGGGATTTCAT----CACGATATTGT-ACTGTGCCTGCATTTTGACTGTGACCCATCACAGGAGATCAGGTGTGGGATTTTCCACTTGTAAGGT--CATGTCAATGCTCAAGAGGTTTCGAATTTTGGagtattttggatttcagattct

a score=8113
s chr3           141879236 259 + 160039680 TTTTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCCTTTTGGAAACATTTCAAATTTGTCATTTTTTGGACTAGGGATACT
s HiC_scaffold_1 154109087 243 + 233722169 TTCTTAGATTTT-GGAATATTCACCTACATATAATGGCATATGTCAGTGTTGAGATTCCAATCTAAACATGATGATTGTTTATGTTTTATGTG-----------CACAGGCTGAAGGTAATTCCATGCAGTATTTTTAGTGTACCTATACTTTGACTATAACTCATTATATGAGGTCAAGTG-TGAATTTTCTGCTCATGGAATTACACCAGCACTC---AAAAACTTCAAACTTGGGGCTTTTTGGATTAGAGATGTT

a score=5083
s chr3           141879236 251 + 160039680 TTTTTAGATTTTTAAAATATTTGTAGATTCTTAATG---TGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCCTTTTGGAAACATTTCAAATTTGTCATTTTTTGGACTA
s HiC_scaffold_1  64686271 237 + 233722169 tttttaaagtgttggaatatttgcatatacataatgaatTCATGTCGAAAGGATCCAAGTGTTA-------ACGAAACTT-----TGTTTTGTATACACTTTACATACCTAGATGGAAGGTGACTTTACACACTATTTCTAGTGTCCCTGAGGTTTTTCTATAATTCATCATATGAAGTTAGGACTAGCATTTTCTACTCATAG-----TATATGTTTTTACAAAAGAGTTTTAGCATTTCACATTTCAGATTA

a score=7025
s chr3           141879236 236 + 160039680 TTTTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATC--TCCCTTTTGGAAACATTTCAAATTTG
s HiC_scaffold_1 135060299 234 + 233722169 tttttggattttttaa-tacTTAAGGATACATAACGAGAAAGCTTGAAGATGGAACCTGgatctaaatatgaaatttatttgctTCATATACACTTTATCCG--TGTACTCTGAAAATAACTT-AAACAGTATATTTAGTGTGCCTCTGTTTTGACTGTGACCTGACATGTGAAGTTAAGTGTGTGATTTTCCACTTGTAGTACCATGACAGTCAGTGTTCAAATTGTTTCAGATTTG

a score=5915
s chr3           141879236 257 + 160039680 TTTTTAGATTTTTAAAATATT----TGTAGATTCTTAATGTGATATCT---TGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCCTTTTGGAAACATTTCAAATTTGTCAT----------------TTTTTGGACTAGGGATA
s HiC_scaffold_1  32132012 258 + 233722169 tttcttgCATTTTGGAATACTGTCATGTACATT---AATTGCATACCTGTCTTGGGACAGGACCCA-ATCTAAACATCAAATTTGTATTT---------------CACACACATAGCCTGATTGTAATTTTGTACAATATTTTCAGTGTGCCTACATTTTGACTGTCACTTGTCACCTGAGGTCAGGTGTGAAATTTGCTACTTGTGGCATCATTTCAGTGCTC---AAAAACTTCAGATTTAGGATCACTTTAGCATTTAGATTTTTAGATTAGTGATA

a score=4606
s chr3           141879238 233 + 160039680 TTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAAC-TTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCCTTTTGGAAACATTTCAAATTT
s HiC_scaffold_1 212431629 210 + 233722169 ttttggattttgaaatatttgca---------tataata--------atGAAACATCAAGTCCAAACATAGACTTTCTCT--TTCACCTGCGCCATATATA--CCTGGCCTGATGGTAATTT-ATGCAGCACTTTTAGTGCACCTGTGTTTTGAGTGTGAGCTGTCACTTGAAGTCAGGTGTGAAGTTTTCCACTTGTACCGT--CATGTCAATGCTcaaaaaattttagattt

a score=6694
s chr3           141879238 219 + 160039680 TTTAGATTTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATC--TCCCTTTTGGA
s HiC_scaffold_1 207408914 211 + 233722169 ttttggattttggaacaCTTGAGCATACACAGTAAGCCATTTTGAGGATGGGAC------CTAAAGAAGAGACTCATTAgtttcataaatacattatacACAC---GCCTGAAGATTATTTTATACACTATTTTTAGTGCCCTTGTGTTCTGACTGTGGCCCATCACATGAGGTCAAGTGTGGAAGTTTCCACT-GTGGCACCATATTGGGCTATTTTGGA

a score=8145
s chr3           141879245 264 + 160039680 TTTTAAAATATTTGTAGATTCTTAATGTGATATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATC---------------ACATCTCCCTTTTGGAAACATTTCAAATTTGTCATTTTTTGGACTAGGGATAC--------TAGTACAACAACGTG
s HiC_scaffold_1  65170217 285 + 233722169 TTTTGTGGTATTTGCATATGTATAATGATGTATTCTGTAGATGGGACTCATGTCTAAATATAAAAGTCATGTATGCTTCATATACAACCTGCACACATAGCCTGGGAGTAGTTTCATACAACATTTT-AGTGCACCTGCATTTTAACTGTGACCTGTCACAGGAAATCAGATGCAGAATCTTCCATTTGTGGCATTATGTCCGTGGtcaaaacatttcagattttggagcactTCAGA-TTACAGGTTTTTGGATTAGGCATGCTCAGTATGTAATAGAACAACATG

a score=7854
s chr3           141879276 166 + 160039680 ATCTTGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCTT--ATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCA
s HiC_scaffold_1 132643602 164 + 233722169 atctTGAGGATAAGACACAAGTCCAAACATAAAATTCGTTTATGTTTTTTATATGTCATGCACATAACCAGAGGG----taatttcatataatatttttagaGCACCTACATTTTGACTGTTACTTGTCATATGAAGTTAGGTGAAGAATTTTCTACTGGTGGCATCA

a score=7560
s chr3           141879280 204 + 160039680 TGGGGATGGAACTTACACCCAACCATGAAGTTTATTTATGTCT-TATGTGTCATATACAAA-CAGAGAAG--GAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGGAATCACATCTCCCTTTTGGAAACATTTCAAATTTGTCATTTTTTGGA
s HiC_scaffold_1 130584510 189 + 233722169 TGGGGATGGGATgaaaatctaaatatgaaatttgTTTATGTTTCTAT--------TACAACTCAGAGAAGCTGAAGGCAATCTTACCCAATATTTTTAGTGTGCCTGCATTTTGACTGTGACCTGTCACATGAGGTCAGGTGTACAGTTTTCCACTTGCGGCAGAACgtct-----------atattaaaaatttttttggttttgga

a score=4522
s chr3           141879322 115 + 160039680 TTATGTGTCATATACAAACAGAGAAGGAACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACTGGTGG
s HiC_scaffold_1 223410805 113 + 233722169 ttatgtttcatataca--cATAGCCTGCAGGTAGCTCTGTACAATATTTTCAGCACACCTGTATTTAGATTATGGCTCCTCACATGAGGCCAGGTGTGAATTTTTCCACTTGTAG

a score=5167
s chr3           141879349 83 + 160039680 AACATAATTTTACACAATATTTTTAGTGTGCCTGCATTGTGCCTGTGACCCATCACATGAAGTCAGGTGAGGAAATTTCCACT
s HiC_scaffold_1 186617287 83 + 233722169 AAAGTAGTTTTCCACAGTACTCTTAGTACACCTGTACTGTGACTGGGACCCATCACATGAGGTCAGATGTGGAAGTTTCCACT

a score=8542
s chr3           141948525 396 + 160039680 TGTAATCATTAGA----CTTACAGGCTGCACTTTAAGGTTGTCAGATAAAAATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAAAATCCAAAGGAAATCTGAAACATAACCTGGTTGTGAGCA-CTTGGATAAGAAATAGTCAACC-----TGCTCTGAGTTTAAAAAATAAAGCAAGTTTAAAAAATGTAGC
s HiC_scaffold_1  20164871 382 + 233722169 tgtaattatgaAGTGATCCTACAGATTGAGC------ATTGCTAATTCAGAAATCTAAACTCCAAAAGC---------AGAAACTGTCT-GAGCACTGACATGATGCTACAAGTAGAAAATGCTGTACTTGATTTCATGTGAGAGACTATAGTCAAAATACAGATGCACAA-AAATACATTACAAAATTACCTTTATGCTATGcgtat--agaatatatgaaacttACATGAA--TTTGTGTTTAGACGGTGTCATCAC---TAAGATTtctcactatatatatatgaaaattcaaaaatctgaaaaataactcaaaatactTCTAGTCCTGAGCATTTTGGATAAAGTTTACCCAAACTATAATGCTTTGTTGCCAAATAATCCAGTTCGTCCCATGGATGTAAC

a score=9314
s chr3           141948567 350 + 160039680 TAAAAATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCAT--TTTCTATATACAGATATTCCAAAATC----CAAAGG-----AAATCTGAAACATAACCTGGTTG-TGAGCACTTGGATAAGAA--ATAGTCAACCTG----CTCTGAGTTTAA-AAAATAAAGCAAGTTTAAAAAATG
s HiC_scaffold_1 220337548 354 + 233722169 TGAAAATCTAAAACATGAAGTGTTCCA-AACTGTAAATAGTTTTGATCACTGGCATGATGCCACAAGTGAAAAATTCCATACCTGGCCTTATGTGATGGATTACAGTCAAAATT-----------AAACCATTgtgtaaaattaccttcaggcctTGTGTGTAAAGTgtacatgaaatataaat-gaatttcatgtttagatttGAGTCTCATCCCTAAAGTAGCTCATCATGTATACATACAGATATTCCtgactctttttaaaaactactaaatTAGAAGTAT--TTTTGTTGccaagcattttaaataaaaggatgCTCAAGCTGTATTTTCAAAGTTTAATAGAGTAAGATTATTTCAAAGTATG

a score=7134
s chr3           141948567 270 + 160039680 TAAAAATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCT----------------ATATACAGATATTCCAAAATCCAAAGGAAATCTGAA
s HiC_scaffold_1 219325103 281 + 233722169 TGGAAATCCAAAAGCCAAAATAGCCCCAAATCTG-CAATGTTT-GAGTGCCAAGAAGACACCACAAGCAGAAAATTACACCCCTGACCTCATGTGAAAGATCACAGGCAGAACTCTGGCACAATAAAAATACTGTGTAAAATCACTTTCAGGCTTTGTGTATAATGAACACAGGAAACA-AAT--GAACTTCATGCTTGGATTTGGGCTCCGTCCTCAAGATATCTCATTTTATttgcatgtgtatgtgcacatgcaaatattctaaaattttaaagacGTCAAAA

a score=10101
s chr3           141948568 314 + 160039680 AAAAATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAA-------AATCCAAAGGAAATCTGAAACATAACCTGGTTGTGAGCA-CTTGGATAAGAAATAGTCAACCTGC
s HiC_scaffold_1 164652461 313 + 233722169 AAAAACCCCACATCTGAAATGCTCCCAAATCCAAAACT---TTGCATGCCAACGTAACACtgcaagtggaaaattccacttCTGACTTCATGTGATGTATCACAGTCCAAATGCAGATGTGCTAAATGTATTGTGTAAAATTACCTCCAGGCTATGTGTACAAGGTGCATATGACacaaaaat-gaattttgtgtttagacttgggtTCCATTCCCAAGACATGTCATTATGTGTACACAAATATTTCAGCCCCCttcctcca----aaatctgaaacac-tttagGTCCCAAACATTTTGGATAGGCAAATCTCACCCTGC

a score=11232
s chr3           141948568 310 + 160039680 AAAAATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAAAATCCAAAGGAAATCTGAAACATAA-------CCTGGTTGTGAGCACT-TGGATAAGAAATAGTCAAC
s HiC_scaffold_1 221380546 314 + 233722169 AAGAATCCCAAGCCCAAAATACTTCAAAATCGG-CAATGTTTTGAGCACTAACATGATGCCAGAAGTAGAGAATTCCACACCTGACCTCATATGGCAGATTACAGTCAAAATACAGGTGctctaaaaatattgtttaaaattacCTTCACATTGTATGTATAAAATAGCTATGAGTCAAG---GgaattttatgtttagatttgGATCCCATCCCCAAGAGAAGTTATTATGtacatgcaaatattccaaaattaaaaaaaaaattaaaaattggaaacTCTCTTGATTCCGAGTATTGCAGACAAGAAACACTCAAC

a score=6067
s chr3           141948569 249 + 160039680 AAAATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAA
s HiC_scaffold_1 204967173 237 + 233722169 aaaatctgaaatccaaaatactccaaaatctgaaact-ttagGAGTGCCAGAAGGA---------TGGGAAATTCTACACCTGCCTTTATGTGATACATTGCAGTAAAAGTGAAGGCACACTATAAGCACTGTATAAATTTAACTTCAGGCTATCT-CAGAAGATGCATCTGAAACATAAAT-GTCTTTCATGTTTACACTGGGGTTCTATAACCaagatatttcattatgtatatgtaaatacccaaa

a score=7024
s chr3           141948571 260 + 160039680 AATCCCAAACCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAAAATCCAAAGGAAA
s HiC_scaffold_1 197767740 250 + 233722169 AATTCAAactctgaaatgctccaaaat---ataaatttttgagtgctggcatgATGTCACA-GTGAAAATTCCCACAACTTACCTAATGTGATCAGCTACAGTTAAAACATAGGTTTACTAAAAATATTGTGCAAAGTTACCTGCAATCT--GTATGTAAggtatatatgaaacataaat-gaatttcatttttagacTTGGGTC--ACATCTCACatacttcattgtacaaaaacaaa-agttcaaaatgaaaaaaaaa

a score=7751
s chr3           141948580 296 + 160039680 CCCAAAATGTTACATCATTGAACACTGTTTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAAAA-----TCCAAAG---GAAATCTGAAACATAACCTGGTTGTGAGCACTT-GGATAAGAAATAGTCA
s HiC_scaffold_1 167548964 296 + 233722169 ccaaaaatgtaaaatactccAAAA----TCTGAGCACCAACATGATATCACAGGTGGAAAATTTCACACCTCACCTCACATGATGGATTATAATCAAAACTCAGGCACAGTGAAAATGCTATATAAAATTACTTTGGGGCCATATGTATGAGGTATATATGAAACA-AGT--GAATTTTAAGTTTAGATTTGTATCCCAGCtccaagatatctcattatgt-tTTGAGACTATTCCAAAAATTCCcccaaaatctgaaatctgaaatct-ttCTGATCCCAAGCATTTCAAATAAGGGATCTTCA

a score=8517
s chr3           141948608 273 + 160039680 TTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAAAATCCAAAG-----GAAATCTGAAACATAACCTGGTTGTGAGCACTT-GGATAAGAAATAGTCAACCTG
s HiC_scaffold_1  66334488 276 + 233722169 TTTAAGTATGAACATGATGCCCCAATTGGAAAATTTCGCACCTGACCTCATGTGATGGGTTGTTGTCAAAATGCAAATGCACTAAAAACATTGTAT-AAACTACTTGTGGGCTATATGTATAAAGTATATTTGAAACATAAAT-CAATTTTATACTTAGACTTGGCTTCCATCTCCAAGATACCTCATTGcatatttgcaaatattaaaaaaattaaaaaatctaaaatctgaaatat-ttgtgGTTCCAAACAGTTAGGATAAAGGATATTTAACCTG

a score=10965
s chr3           141948608 338 + 160039680 TTTGAGCTCTGACATGACACTACAAGTGGAAAATTCCACACATGAACTCCTATGATCAGCTCCAGTCAAAGTGCAGGTGTGCAAGAAATACAGTATAAAATTACCTTCAGGCTACGTGTATGAGGTGTACATGAAGCATAATTAAAATTTCATGTTGGGACATAATTCTTACACTCAAGGTATGTCATTTTCTATATACAGATATTCCAAAATCCAAAGGAAATCTGAAACATAA------CCTGGTTGTGAGCACT-TGGATAAGAAATAGTCAACCTGCTCTGAGTTTAAAAAATAAAGCAAGTTTAAAAAATGTAGCACGTACCCTGATGACAGGAAAGTTT
s HiC_scaffold_1  31086397 321 + 233722169 TTTGATCACTAATATGACACCACAAGTAGAAAGTTCCACACCTGACCTCATATGGCACACTGCAGTCCAAATGCAGGAATTCTACAAATACTGTATAACATTCCCTTCAGGATATGTGTATGAAGTgcatatgaaacataaat-gaattttatatctGCACTTGGGCTTCATCCCAAAGGTATCTCAT------TATGCAAATATCCCAAAATCCATA--AATTCTAAACTGCAAATCACTTCTGATTCCAAGCATTCTGTATAAGAGATACTCAACctgt------------aaatgaaataagccatgAAA---TAGCCAAGCCCCTGTAGAAATGTAAGTTT

a score=14290
s chr3           142500510 406 + 160039680 AAACACTAGAAAT------TTCAGGTCACCCTATTTCTTCCCCTGCAGAG---------------ACATGGCCCCAGAGATTCACATGCCAGAACCCTTGTGCCTCATTGGGAGCACCGAGGGACACCTAGTAACTAACCAGGAAGCCCTGAAGATTCTGTCTGCCATCACACAGCCAGTGGTGGTGGTAGCCATTGTGGGTCTTTATCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGGAAGGAGAAGGGTGAGTACCTACAGTGCTTGCTGAGTCTTCTCCAGCCAC-ACAGGCTGAGCACATCCAGCCTAG-GGTGTGAGGAGAGAAA---GTCGGGGACCTTGCTGGCTACAGAAAGCTTGTGTTTGTGCCACAGCTGCTGTTGGCATCAGATGGGAGATAAAGGGAAGctctctctctct
s HiC_scaffold_1  96737973 418 + 233722169 AAGGACTAGAAACCGTGAATCTGATTCAATCTACCTCTATTCTTATAGAGCAGAAAACACACTGAAAATGGCACCACACATCCACATGCCAGAGCCCTTGTGCTTCATTGAGAACACTGAGGAGAAGCTGGTGGTTAAACAAGAAGCTCTGAGCATCCTGTCTGCCATCAGCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGCAAGAATAAAGGTGAGTGCCATCGGCAA-AGATGACTCCCTTCTATCCCCTACAA--TGTCACCATCCAGCATGGAGATTTGAGGAGAGAAAAAGGCAGTGAACATTG-----------AAGCCAAAGTTTGGGCCATAGCTGGTCGTTTTAACTCACTGGAAATACAAGGTAGCACTTTGATTCT

a score=15627
s chr3           142500521  894 + 160039680 ATTTCAGGTCACCCTATTTCTTCCCCTGCAGA--------------GACATGGCCCCAGAGATTCACATGCCAGAACCCTTGTGCCTCATTGGGAGCACCGAGGGACACCTAGTAACTAACCAGGAAGCCCTGAAGATTCTGTCTGCCATCACACAGCCAGTGGTGGTGGTAGCCATTGTGGGTCTTTATCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGGAAGGAGAAGGGTGAGTACCTACAGTG----CTTGCTGAGTCTTCT-CCAGCCACAC------AGGCTG--AGCACATCCAGCCTAGGGTGTGAGGAG--AGAAAGTCGGGGACCTTGCTGGCTACAGAAAGCTTGTGTTTGTGCCAC------------------AGCTGCTGTTGGCATCAGATGGGAGATAAAGGGAAGctctctctctctctctctctctctctGTGACTTAGCATGTGTTTATTCCTCAATA-----CGTTTCTGGAA--------------AAAAGGGTAA-------------------------AACATGTTCCT-------------------------TTTTTA-GGAAGTAAGACA-----------------------------TCAGTGGAA--------------TAAATTCAATGAAA-TAAATTCAA--------ACTACCAAATTTTTAGAAGCACGAAATGATGTTTTAAAAAAAACATCAGATCCCAACTTTCAGTCCTTAGTATTATTTT----------------------------CCCATTCCTCT-----------GCGTCCATTCCCACCATCACTGGCCATGTGCACTGTCTTGT--------------CA-TCTTCTCTCG----------------------CTTACATCTTAGCTTAAAT-------------TCTCAA----GGGAATACATGAATTCCAGACC--TCTCTTCCATCTCTCCTGCTTGCTTTCCAGGCTTTTCTGTTGGATCCACTGTACAGTCTCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCACCCCCAAAAGCCAGACCACACTTTGGTTCTGCTTGACACTGAAGGCCTGGGAGATGTGGAGAAGGTAAGGAGAGAGGATTCTGTTTGGAT
s HiC_scaffold_1  96769978 1121 + 233722169 ATTCTGACTCTTTCCATCCCTTTCCTTGCAGACAGAGCACACACTGGTCATGGCCTCCCAGACCCACCTGCCAGCCCCAGTGTGCCTCATTGAGAATATGAAAGGGCAGCTGAAGGTGAATCAGGAAGCTCTGAGCATCCTGTCTGCCATCACCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGTCGGCTGGGAAGAAAAAGGGTGAGTGCCACCAGCAAGGCCCTGCTGAGCCCTCTGCCCACCACACTGCCAGCGGCTGACATAGCAGTCAGACAGGGACGGGCAGAGCCAGGAAGTAGTAG----TGCAAGCTAA--------------TATGCCACTCTCAGGCGGATTTTTTAATCTGTTATC--CATTTCATCCAGGCCAAAATTCAGCTCCCCAGCAC---CCCACATTCATTATGCTCTAG-----ATTCCTTTCAGAATCATAATCTTTTCTAGAAGGGTGAAGACAGTCATATGAGTAATTAATTCACAGAGTATTATGTTATGAACCTGTTACTAAAGTGTTGCCATAGTAAGTGCAAGTTTTCATGGATATTTAACATTAAAGAAGCTTTGGAGCTgggttgtagttcagtggcaaagtgcttcCCTTGTATGTTTAATAACCTTagattcagtccctagtaccaccaca--ccaaaaaaaaaaaaaaaaggaaagaaagaaagaaaaaaaactcaattt---gttttccatattgtttttattatttaaaatagacaTAATGTATAGTTTACTCTTTTAAACATTGTAAGCAtgtatttctatt-tcattgagGAAATTCACATTTTTGTGTAGCTATAATATCCATTCATCTCTAGAATACTTGATGTAATTTCAGTTCTCACTCCTAAGCTTGATTGTGCTAACATTTATCTCAATTTTGTACATACTTGATATTAAAACTCACCCATCTCATCTCACCCG--TGTTTTGCAGGCTTCTCTCTGGGCTCCACGGTGCAGGCCCACATCACAGGAATCTGGATGTGGTGTGTGCCTCATCCCAAGAAGCCAGATCAGACTCTAGTTCTGCTTGAAACCAAGGGCCTGGGAGATGTTGAGAAAGTCAGGAT-GAGGATGCAGTTTGTAT

a score=4456
s chr3           142501143 185 + 160039680 ACCATCACTGGCCATGTGCACTGTCTTGTCATCTTCTCTCGCTTACATCTTAGCTTA------AATTCTCAAGGGAA---TACATGAATTCCAGACCTCTCTTCCATCTCTCCTGCTTGCTTTCCAGGCTTTTCTGTTGGATCCACTGTACAGTCTCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCACCC
s HiC_scaffold_1  96686339 185 + 233722169 ATCAATACTGGCTATGGCTTCAGTTTTCTCTCCTGCTTTTGATTA--TTTTAACTTCTATCTCAATTCCCAGATGCACTTTCCATTAACTCTA-----CTCACTCATGCCTCCTAA--GCTTTACAGGATTCTCTGTGGATCCCACAATGCAGTCTAACAACAAAGGAACCTTCATGTGGAGTGTGCTACAGCC

a score=11081
s chr3           142501253 159 + 160039680 CTTTCCAGGCTTTTCTGTTGGATCCACTGTACAGTCTCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCACCCCCAAAAGCCAGACCACACTTTGGTTCTGCTTGACACTGAAGGCCTGGGAGATGTGGAGAAGGTA-AGGAGAGAGGATTCTGTTTG
s HiC_scaffold_1  96740167 160 + 233722169 CTTTGCAGGCTTTTCTGTTGGCTCTACGGTGCAGTCCCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCATCCTGAGAAGCCAGACCACACCCTTGTCTTGCTTGACACTGAGGGTCTGGGAGACGTAGAGAAGGTAGAGGAGAAAGATTCTTATTTG

a score=77789
s chr3           142502787 5511 + 160039680 [encoded data, 6142 characters]
s HiC_scaffold_1  96740867 5300 + 233722169 [encoded data, 6142 characters]

a score=8232
s chr3           142502992 154 + 160039680 TTCACATTTGTTCTCATTTCCAGGATGATAAAAAGAATGATACTCAGATCTTTGCACTAGCAATCCTCCTCAGTAGCACCTTTGTATACAACACTATGAACAAAATTGACCAGGGGGCTATCGACCTATTGCAGTATCCTTT-TGTGGTCCAGGA
s HiC_scaffold_1  96780853 155 + 233722169 TTCAAATGTGTTCTGATTTCCAGGATGACAACCAGAACGACTCCTGGATCTTTGCCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTTGTGTAGTCCAGGA

a score=7025
s chr3           142502997 205 + 160039680 ATTTGTTCTCATTTCCAGGATGATAAAAAGAATGATACTCAGATCTTTGCACTAGCAATCCTCCTCAGTAGCACCTTTGTATACAACACTATGAACAAAATTGACCAGGGGGCTATCGACCTATTGCAGTATCCTT-TTGTGGTCCAGGACATCACTG-----GGATGGAAA------------GAGCCTGCCACCTGTGCACCTATGAGACCTGGTAGACTA
s HiC_scaffold_1  96772229 219 + 233722169 ATGTGTGCTTTCTCCCAGAGTGACCCCTGGAATGACTCCTGGATCTTCACCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTCTTGTGGTCCAGAACACCAGTAAAAGTAGATAAGAAACCTTTTTTAGTAAACCAGCCACCT----AACTCTGGATCCTGGTGGGCTA

a score=5825
s chr3           142502999 152 + 160039680 TTGTTCTCATTTCCAGGATGATAAAAAGAATGATACTCAGATCTTTGCACTAGCAATCCTCCTCAGTAGCACCTTTGTATACAACACTATGAACAAAATTGACCAGGGGGCTATCGACCTATTGCAGTATCC-TTTTGTGGTCCAGGACATCA
s HiC_scaffold_1 128768546 153 + 233722169 TTGTCCTGGCCTGCAGAGTTACCCCCAGAATGACTCCTGGATCTTCACCCTGGCAATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAGCCATCAACCATAAGGCCCTGGACCAGATGCAGTATCCTTTTTATGGTCTAGAACACCA

a score=23795
s chr3           142503688 2048 + 160039680 CCGCTTCTGGCAGCTTTCCTCAATTGTGTCTCAGCAATGTGACAGAACTGACAGACTTGCTCCGGACAAGAAACTCCTCTGATTCTAATCAAACTGAGGGTGAGGGACCTGCTGAC---ATGAGCTTCTTCCCAGACTTGGTGTGGACTCTGAGAGATTTCTTCCTGGACCTGCAAGCCAATGGGCATGCCATCACATCAGATGAATATCTGGAGAATTCACTGAAGCTGAAGCAAGGTAACAGAGCTTCCTT-TTGGGAAAAAGAAAGA------------AAAGTACCCAGGATTATTTTGTTTTTAATAATGCAGCTAAGTATATCATTTTCCATATTTCCCCTCCAAGCACTTCTACAAAATAATAGTGATTATTTAATTGAGAATGAACTAACAGGTTCAATATTAAATTCCATTAGTCTCAGTTATTGAACAAATTTCTCTCTTTTATTGTTTCCTTTGCT--AGTTAGGTTTAAATCTTTATGC-----------------------------AGTATCAGGGG---AAAGGACATTTATATAAAGCATATAGATTAAAGTGGA---------------------------------------------------------------------------------------------------------------TATAAATTGT----------------ATTATAG------------------------------------------------------------------------ACAAA-------------TCTTGTA-------------TTTCCTTCTCT------AGGTAGCGATGAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATACAGAAGTTCTTCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCGCTTGGAAGTAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTCAGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAATCTAAGACCAAGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAGTACTTTTTAAAA-AATTTTATTCCAACTCATCATAGAGAGTAATGGACACACAGAGAATCTTTGTTGAT---GAATTGACAAATGGGTTAGTATTAGCTATGATGGATATTCAGTGTACT---GTGTTCAGAAA--------TCAATACACTTCTAGTATTTGTTTAGTAAAACCTCAGAGGTACATCAAGTTTAATAAGAACAAAGATGT---------GAAGTTT--------AGAGAAGCTTTTACTCT------TGAAACACATTAACTCACATGGGTTGACCACATCTACAC--AAGGGGATTTTTATT-----------ATGTGACACAGTATTTGATGATTGCATCTTAATGCAGAACCCCATGATTTAGAACGTGGCAAATGCTTACTCTAACATGAATGGAATCTGCG--TTACCTTCATTAAGAAGCTGGCAAGGAAGAAAAACGAGGCAGTTCTGGTGAAGAATAAGATCTAGGTCACTGAATCCTATTTACAGAGGAAATTAACTCATGCCACCTTGATTGTGATAAAACAAAACAAAAAGGGGAAACGGTGAATGAAATAGAAAACT--------GAGAGGAAA-----AAAAGGGAAAGGAAACTTAAAGCAAACATTTTAATCAAATTAAAACCACAACT----------TTTATATG---ATCATCTTATTTCTTTATGTAGGAGGATA--AAATGTAGGCCATC---ACATAGATCTTGAGAATTCTATTTTTCTTCTTTCAACAAAGACTAGCTTATGATTTATTGTTGTTTTTGTATGTTTTTCCTCAAAGAAAGAACAACTTGTCTTCTTAATCACATAGCTCCTCGGGGCCATTTGAATATTGTCCAGAAGACTGAAAGACTTCAGGCAATACATAGTTAGCATGGTCAGAGTGAACTCGTGTAGACT-CCTGGACATGATACA--GGCATCTTTTCCTTTTCTGAAGGTCTAGAAAGCCTGGTGCTGACTTATGTCGATGCCATCAACAGCGGGGCTCTGCCTTCCATAGAGAACACAGTAGTAACCTTGGCCCGGAGGGAGAACTCTGCAGCAGTTCAAAAGGCCATTGGTCACTACGATCAGCTGATGAGCGAGAAGGTGCAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACCGGACC-TGTGAGCGAGAGGCCATAGAAATCTTCAGGAAGCATTCGTTCAAGGATGAGGGTGAATTTTTCCAGAAAGAATTGGAGGTCATTATTTTCTGTATTTGTTATAGACATCAGGGTCACAGAAGGCAAGAATACTCCTGCAA-GATATGCAATAA
s HiC_scaffold_1  96781202 2241 + 233722169 CTACTTTTGCCAGTTTTCCTTAGCT----CTCAGCTATGTGACTGAACTGACAGACCGAATCCGAGCAAAATCCTCACCCAACACGAGTGAAGTTCAAGAT------TCAGCTGACTTCATGAGCTTCTTCCCAGACTTTGTGTGGACACTGAGAGATTTCTCCCTAGAATTAGAAATAGATGGAGATTCCATTTCTCCAGATGCTTACCTGGAGAATTCTCTGAAGCTAAAAAAAGGTAATATGGATAAATAACTGGTAAATGGAAATATCAAGACATTAGAAATTATCAATGTGTACTTTTCTAATTATACTCTTTTTACATTTAGAGTTTTCTATTACTTCTACCTACCTACACCTGGAAATTAATGCTTAATACCT----------GTGTTAAGTGattcaactttaaaatattttcatccttGTTCAGAGACAAGTTTCTGTCTTTCAT-GTTTACTATGCTTAGTTTACATTTA--TCTTGGTGCTTACCATTTGTGATTCTGTGTTTATCCAAAGAATGTGGTGTACAGTGAAtgtatatttgaagaaaatagatCAAAGTAGTATAGTAGCACAAGTCTTTGGAAAGTATGTTCCACAGACAAATGCTAACTAATTAGAGACTgcctcttttcttgaaatatatgTTATTAGAAAAACATTGAGCCCATTCATTTATACATTGTCTACAGATGCTGGGATGTTATAGTCAGTGAGTTGAGTGCAGAGGAAAGAGATTATCTGGCCTGAAAAGCTGACAATATACACTATTTGGTCCTTtacaaaaatgtttgcaaattctTGCAGCAGGTAAacccttttttttatcttcttacaGGTACTGGTgagaatgttaaaaattataatctCCCCGGACTCTATATCTGCAAGTTCTTCCCAAAGAAGAAATGCTTTATCTTCGATAGATCCACTCATCCAAAGTAGCTGGCCCAGCTCGAGACCCTGCACGATGATGAGCTGGATTCTGAATTCGTGGGGCAAGTTGCAGAATTCTGTTCTTACATCTTCAGCTCTGCCAGGACTAAAGCTCTTCCGGGAGGCATCCGTGTCAATGGACCTCGTGAGTACCCTTCCCACTAGTTTCACTCATTCACAGCAATGAggagcaaggaaaaaaaatgaatctgtTTCAGTTTCAGGTTTGCTAATGAGCCACTATTGCAT----TGAATTTTAAATGACCTCCAGCTTTCTAAAAGATTTTCttaattacatttct------tgattggaaaa----tagagggaaa---agcttaa-aggaaaagagaagttcttgctttaaaattccttaaataaatgagacttgcAGTCTGCAATATGGAAGCCACTTAGAAAAATAGGCT-----TATTTAAATTTAAGAGTacattaatttaaatgaaaaaatttaaaacaa-atctgAAGGCTATATTCAAAGGCA------CATATCTTCGTGCAC--CTAAtgattattgtatttt---ttgaaaatgctgttcattttaataaaacaaatggcCA---------------CATCTTTTGAATGGAATAGCATTT-------CTTGTTCTATGAACAGTGGTCA--AATACATAC---------TGTGAACAAGGATGATAATACAGATATA-AATGAAAGGAATAGAATTCTAGTACCAAGGGAGTATAGATTTAAAATGGATGGAAAACTCTAATTAACAGTCCTATGTAGCATATATCCAGGAATCGCAATCTAGTTTATATACACATCATCTGGAGGTATTCTGAAGAGGAATATCAATTTCAGCATGTCTGGACAGAGGTCTTG-------TATTTCTAATAAATTACCAA-----------------------------GTATGTTGGTAATTATAACAATGACACTTTG-------AGGCAAATAGG--------------------------AGGTAACTGACAtactt----------gtaattattttaa--aaaggagactttTTTCCACTGTATTGATAAAAAGCATCATCACTTGCTCTCTATGTGCAGGTCTTGAGAGCCTGGTATTGACCTATGTTGATGCCATCAGCAATGGGGAGCATCCCTGCATGGAGAATGCAGTCCGGGCCTTGGCCAAGAGGGAGAACTCAGCTGCTGTGCAGAAGGCCTTGGACCACTATGACCAGCAGATGGGTCTGAAGGTGCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTTGTGAGAGGGAGGTCACTGAGATCTTCATCCAACATTCCTTCAAAGATGTTGGCCAGGTATTTCAAAAGGATTTTGCAGTAGGTCGTTTTTGTCTCAAGTATGTTGATTTGGATTAGAGAAGGAAA----AGTACTGCAAGGAAATGAAATAA

a score=10272
s chr3           142503692 393 + 160039680 TTCTGGCAGCTTTCCTCAATTGTGTCTCAGCAATGTGACAGAACTGACAGACTTGCTCCGGACAAGAAACTCCTCTGATTCTAATCAAACTGAGGGTGAGGGACCTGCTGAC---ATGAGCTTCTTCCCAGACTTGGTGTGGACTCTGAGAGATTTCTTCCTGGACCTGCAAGCCAATGGGCATGCCATCACATCAGATGAATATCTGGAGAATTCACTGAAGCTGAAGCAAGGTAACAGAGCTTCCTTTTGGGAAAAAGAAAGAAAAG-----TACCCAGGATTATTTT----GTTTTTAATAATGCAGCTAAGTATATCATTTTCCATATTTCCCCTCCAAGCACTTCTACAAAATAATAGTGATTATTTAATTGAGAATGAACTAACAGGTTCAATATTAAA
s HiC_scaffold_1  96772585 384 + 233722169 TTTTGCCAGGTTTTCTTA---GCCTCTCAGCTGTGTCACAGAGCTGACAGATCTGATCAGAGCAAAATCCTCACCTGACACAGATAAGACTGAAGAC------TCAGCTGACTTTGTGAACTTCTTCCCAGATTTTGTGAGGACTCTGAGAGATTTCTGCCTGGAACTGACACTAGATGGACAGAGCATCTCTGCAGACAGCTACCTAGAGTATTCCTTGAAGCTGAAGCAAGGTGGTAGGGATATAAATTGGTGAAAGGACATAGTAAATCATtaccaattattattttttacttttctacttATGCTTTT--TTACACTGTTTTCTATTTCTATCACCTGGTTGTTCCCAGAAATTAATGTTTAATATC----------TGAATCAatagatttcatttaaaa

a score=9641
s chr3           142503693 435 + 160039680 TCTGGCAGCTTTCCTCAATTGTGTCTCAGCAATGTGACAGAACTGACAGACTTGCTCCGGACAAGAAACTCCTCTGATTCTAATCAAACTGAGGGTGAGGGACCTGCTGAC---ATGAGCTTCTTCCCAGACTTGGTGTGGACTCTGAGAGATTTCTTCCTGGACCTGCAAGCCAATGGGCATGCCATCACATCAGATGAATATCTGGAGAATTCACTGAAGCTGAAGCAAGGTAACAGAGCTTCCT--TTTGGGAAA-AAGAAAGAAAAGTACCCAGGATTATTTTGTTTTTAATAATGCAGCTA------AGTATATCATTTTCCATATTTCCCCTCCAAGCACTTCTACAAAATAATAGTGATTATTTAATTGAGAATGAACTAACAGGTTCAATATTAAATTCCATTAGTCTCAGTTATTGAACAAAT--TTCTCTCTTTTATTG
s HiC_scaffold_1 128768899 426 + 233722169 TTTGCCAGTTTTCCTTAGCT---CCTCAGCTATTTCAGAGAGCTGAAAGGCCTGATCAGAGCAAAATCCTCACCTGACACCAATGAGACTGAAGAT------TCAGTTGGCTTAATGAGCTTCTTCCCAGACTTTGTGTGGGCGCTGAGAGATTTCTCCCATGACTTGGAGCTAGAGGGACAGAGCATCTTTGCTGAAACCCACTTGGAGAATGCCCTAAAGCTAAAGCAAGGTAGCAGAGATGTATAATTGGTGAAATGAGGTAGCAAACCaccagaaattattat-tttttagttttctacttatccttttttatattgttttctattgCTGCCACCTACCTGCTCTCAGAAATTAATGTTTAATACC----------TGAATTAatagatttcatttaaaaatattttcttct---ttgttgaaggaataggtttattttttgttg

a score=8772
s chr3           142504216 347 + 160039680 TGTATTATAGACAAA----TCTTGTATTTCCTTCTCTAGGTAGCGATGAAAGAACTCAAACATTCAATCTA--CCGCGGCTGTGCATACAGAAGTTCTTCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCGCTTGGAAG--TAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTCAGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAATCTAAGACCAAGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAGTACTTTTTAAAAAATTTTATTCCAACTCATCATAGAGAGTAATGGACACACAGAGAATCTTTGT
s HiC_scaffold_1  96596106 345 + 233722169 TATATTATATACCAAAAATTCCTATTTTTGCTGTTTCAGGCAGCAACCAGAGAATTCAACATTTgaattttgtccttttccttgtATGAAGACGCTCTTTCAGAGAATGAAATGCTTTATTTATGAA--CCATGCACTGAGAAGAAGAAGCTTTTCCAGGTTGAGATACTGCAAAATGACGATCTGCATCCTGAGTTTGTACAAG------CTGAAT-CTGTTCCCACATTTTTAGTCACTTCACAGCCAAGACTCAGCACAGAGGCATCAAAGTCAGTGGACCTCGTGAGAATCTACTGAAGTCTTTTCCTTCGACTCTGTGGGAAGTGTAAGGAACACAT-GAGTCTCCTTGT

a score=17325
s chr3           142504223 1513 + 160039680 TAGACAAAT--CTTGTATTTCCTTCTCTAGGTAGCGAT--GAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATACAGAAGTTCTTCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCGCTTGGAAGTAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTCAGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAATCTAAGACCAAGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAGTACTTTTTAAAAAATTTTATTCCAACTCATCATAGAGAGTAATGGACACACAGAGAATCTTTGTTGATGAATTGACAAATGGGT-TAGTATTAGCTATGATGGATATTCAGTGTACTGTGTTCAGAAATCAATACACTTCTAGTATTTGTTTAGTAAAACCTCAGAGGTACATCAAGTTTAATAAGAACAAAGATGTGAAGTTTAGAGAAGCTTTTACTCTTGAAACACATTAACTCACATGGGTTGACCACATCTACACAAGGGGATTTTTATTATGTGACACAGTATTTGATGATTGCATCTTAATGCAGAACCCCATGATTTAGAACGTGGCAAATGCT-------------TACTCTAACATGAATGGAATCTGCGTTACCTTCATTAAGAAGCTGGCAAGGAAGAAAAACGAGGCAGTTCTGGTGAAGAATAAGATCTA--GGTCACTGAATCCTATTTACAGAGGAAATTAACTCATGCCACCTTGATTGTGATAAAACAAAACAAAAAGGGGAAACGGTGAATGAAATAGAAAACTGAGAGGAAAAAAAGGGAAAGGAAACTTAAAGCAAACATTTTAATCAAATTAAAACCACAACTTTTATATGATCATCTTATTTCTTTATGTAGGAGGATAAAATGTAGGCCATCACATAGATCTTGAGAATTCTATTTTTCTTCTTTCAACAAAGACTAGCTTATGATTTA-------------TTGTTGTTTTTGTATGTTTTTCCTCAAAGAAAGA-----------ACAACTTGTCTTC---TTAATCACATAGCTCCTCGGGGCCATTT---------GAATATTGTCCAGAAGACTGAAAGACTTCAGGCAATACATAGTTAGCATGGT-CAGAGTGA----------------ACTCGTGTAGACTCCTGG------------------ACATGATACAGGCATCTTTTCCTTTTCT--------------------------GAAGGTCTAGAAAGCCTGGTGCTGACTTATGTCGATGCCATCAACAGCGGGGCTCTGCCTTCCATAGAGAACACAGTAGTAACCTTGGCCCGGAGGGAGAACTCTGCAGCAGTTCAAAAGGCCATTGGTCACTACGATCAGCTGATGAGCGAGAAGGTGCAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACCGGACCTGTGAGCGAGAGGCCATAGAAATCTTCAGGAAGCATTCGTTCAAGGATGAGGGTGAATTT--------TTCCAGAAAGAATTGGAGGTCATTATTTTCTGTATT-TGTTATAGACATCAGGGTCACAGAAGGCAAGAATACTCCTGCAAGATATGCAATAA
s HiC_scaffold_1  96774417 1420 + 233722169 TAGGCAaataccttttttattttcctgtaagcatcaatcagaaagaa---aaaaatataatctgCCCTGACTCTGTATCCAGAAGTTCTTCCCAGAGAAGAAATGTTTTGCCTTCATTAAGCCTGC--TTGGGAA-AAGATGAGCAAGCTACAGACACTGCACAATGATGAGCTGGACTCTGAATTTGTGCAACAAGTTACAGAATTCTGTTCTTACCTCTTCAGCTCTTCCAAGACCAAAACTCTTCCAGGAAACATCAAGGTCAATGGGCCTTGTAAGTACCTTTCgcctatttt--------ctcatttttaaaaccaaGA----------------------ATGAGAAGTAAAATGAACCTAGCTTCAGCTCTGAAA------------ACTGCA----------AATCTACTTCT----CCTGTTGTGTTAAATTGTAGATA-ACACCAAACTTAATAATA-----GATTTCA--TTAATTGAATTTCTTA----------ATAGAAAATGATAAGGAAAGTCAAAGAGGAAATAag-----tttcatt-------------tctgaaaattgcCTCATTAAACTGAACCTCTT--TCGACAATATGGCAGCTACTAGGCCACTGTTGCTATTTGAATATAAAGGTAA-----ATTAatctaaataa---------aaggaaa------------------ttaaaaactgagaTCTAATGGCTA--------TATTTTAAGGGCTCATATGCCCATGTGCTATTCACTGTTTTAT--CAGTACATAAAGAAAGTTCTCTT-----------------------------GGATAATGTTACTTAGTCTAG-----TTATTCAAAT---AGTGGTACcttttggttggg-attgcatttCTTC-------------------------TTACACAAATAGTGAACAA---AGCCTTACTGTGGCCAGGAATGATGACATATGGTTTGGTCCTAATGGTACTTGTGGTACATGCAAATATTTAGTAAACAGAAGTCTATGAGATTTAGAACCAGGATTCAAATTGCATACACATCCCCTGGGGATCCTGCTGAAGAGGAGGATCTAATCTAGCA-----CAGAATTTGAAATGTTGCATTGTTAGCAAATTGCAGGATGGTGCTGAGAACATTGATACTTTGAGAGAAACATGGTAACTGATATGCTGAATTACACAAAAaaagagtcttttctttttttattataacatCCCCTGCTCTGTGTATGCAGGTCTAAAGAACCTGGTGATGACCTACATCAGTGCCATCAGCAGTGGGGAACTGCCCTGCATAGAGAATGCAGTCTGGGCCTTGGCCCAGATAGAGAACTCAGCCGCTGTGCAGAAGGCCTTGGCCTACTGTAACCAGCAGATGGACAAGAAGGTGCAGCTGCCCACAGACACCCTCCAAGAGCTGCTGGACCTGCACAGGGCCTGTGAGGGGGAGGCCATCAAGA---TCATGAAACATTCCTTCATAAAGGAATACATATTGACTAAGAATTTCAAGAGGGATTGCTGGTATGTAATTTTTATCTCAAGATATATTGATTTGGGTGAGAGAAGGAAAAGttg---ccaaaggaaatgaaataa

a score=9065
s chr3           142504232 273 + 160039680 CTTGTATTTCCTTCTCTAGGTAGCGATGAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATACAGAAGTTCTTCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCGCTTGGAAGTAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTCAGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAATCTAAGACCAAGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAGTACTTT
s HiC_scaffold_1 128770846 272 + 233722169 CTTTTTTATCTTCCTGCAGGCACCAGTGAGGGAGAGAAAAATGCTGATCTGTCCCTACTCTGTATCCAGAAGTTCTTCCTGCAAAAGAAATGCTTTGTCTTCAATAGGCCTGGTGATGAAAAGATGCTGCACAAGCTGGAGACATTGCACGATGATGAGATGGACCTGAATTTAG-GCAACAAGTTACAGAATTCTCTTCTTACATCTTCAGCTCTTCCAGGACCAAAATTCTCCCAGGAAACATCAAGGTCAACAGACCTCATAAGTACCCT

a score=13084
s chr3           142505368 424 + 160039680 TCCTTTTCTGAAGGTCTAGAAAGCCTGGTGCTGACTTATGTCGATGCCATCAACAGCGGGGCTCTGCCTTCCATAGAGAACACAGTAGTAACCTTGGCCCGGAGGGAGAACTCTGCAGCAGTTCAAAAGGCCATTGGTCACTACGATCAGCTGATGAGCGAGAAGGTGCAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACCGGACCTGTGAGCGAGAGGCCATAGAAATCTTCAGGAAGCATTCGTTCAAGGATGAGGGTGAATTTTTCCAGAAAGAATTGGAGGTCATTATTTTCTGTATTTGTTATAGACATCAGGGTCACAGAAGGCAAGAATACTCCTGCAAGATATGCAATAAAACTAATAAAAAC--------AATCAGTTACCACTAGTCTGCAAAGAGATGACAGTCACTTATG
s HiC_scaffold_1 128777328 399 + 233722169 TCTCTATGTGTAGGTCTAGAGAGCCTGGTGCTGAGCTGTGTCAGTGCCATCAGCAGTGGGGATCTGCCCTGCATACAGAACGCAGTCCTGGCCTTGGCC-AGAGAGCGACCTCAGCTGCAGTGCA---GGCCTTGGTCCACTATGACCAGAAGCCAGGCCAGAGGGTGCAGCTGCCAACAGACACCCTGCAGGAGTAGCTGGACCTACAAAGGGCCTGTGAGAGGGAAACCATCAAGATCTTCATCAGAAATCCCTTGA------------AATTCCTTCAAAAGGATCTAGTGgtaattttttcttatgttt-ctctGG--ATTTGGATTTCTAAAA--------------GCAAGATCTATGAGGAAATGAATAATTACATTGTAAGAATaaattattgcttgatttcagcATTGTGACAGGTACCTATG

a score=16722
s chr3           142524293 771 + 160039680 ATTGAACATACTCTACACATTTCTATTTCAGTATTAATTGTATTAACTTGACTTGGTCTACTATTGAGTCACAACTTTCCTTGATGATTTGAAATCCCAGCCACTGGAGACTTTCAGATAGTTAACAACCCACAGGAACCAAGTCCCAGTCCCCAGTATCCTGGGCATTAATCACGTCCAAA--ACTTGATGGCAA-TGACAAATAATAGAGATTAGAAGACCCTGCTGTCAGAGC----CTTTCTATGTCCAGGTCTTGCTCTAATGCCTGGGTTCAAGTTTAAGGTCTTCTCTCGATTGTCATCTTCACTGATGAACCATTTATCTGATATCAGCTATGGAACGAAGTCCTGACTAGTTCAAACAAGATCCGGAAAGAAACATGTAGACTCATCTGAATC----------------CTGAATCCACCCCCTtctctctctctctctctctctctctctGGCTCAATTACATAGATGGG------------------------------------------TCACAGAAAAATGCCCTATTGA------------------GTAGGTTTGACCT---TCATGCAGGACAACTAATTCACAATAAAGAAGAA--AGTCTCAGATGCTGTTACTCAAAGGTCAATGAAACATGGTGGTTTGGACCTTGGAAGTGTTCTGCAGCTGCTCTAAGGCCTGGAGGTTGATGGCTCTGCAGCTGACATATAGATGATGGTGATGTGCTGTTGTAGACAA--CTACTGATCAAAAGCACAGCAAGGGTGAAGATGCATGAGTCATTATTAAGGTCATCCTGGAAGGCACATGAGGGCAAAGGGAGGTGGGAGGAtgcta-catccactc
s HiC_scaffold_1  96420664 801 + 233722169 attaattataatctTCACTTTTTCCAT--GGTATTgactgatttaaaattatttgatataaCATTGAGCCTTAAATTTCCTTAGTTAGTTTAAACCTCAGCCTCTGAAGATTTTTAAGTAA---------------AACTAAGTGCTAAA-------ATCATGGCCACTTACCAGTTACCAATCACCTTATGTCAAGTGCTATGTGACAGGAATTAGTTAGCCCTGCAGCCAGAATGACATTTCCTACACCCAAACCACACTCCAATACCTGGAATCAGCTTCAAGGAATTCTCCAGATACTCATCTTCTGTGATGGGGCATCCATCTAACTTCAGCTGCAGAGTGAAATCTCGAACAGCCCAAATAAAGTCTGGAAAGAAACTTACAAACTCAGTGGAGTCTTCTATTTCATCAGATCTGGAGCCAGATTTTGCCCTGATCAGCTGTGT---------TAATTCAGTCACATAGCTGGGACCTCAGTTAAGGAAGGAGAGGCACCACGATTTCCAGATCTCCCTCAGAAACAAGTATTATGaacatttctttctatttatcttaTGTCTGCTTTTACTCAATCATGACAGCTGAGTtggagaagagaagaaatattttcagttgcCATTTTCATAAAGCCAGTGACACATGGCAGCTCAGGTCCTAGAAGGATACTGCAGCTGCTCCAGGGCCTGGTGGTTGATGGTGCC-------------------------CATGCTGTTGTAGACAAAGATGCTGCTCAGAAGCACGGCCAGGGCGAAGATCCAGGAGTCATTCTTAGAGTCTCCCTAGAAGGCACA-AATAGC--AGGGAGTAAAGAATCTGCtatcactcactc

a score=8632
s chr3           142524491 535 + 160039680 AAATAATAGAGATT---AGAAGACCCTGCTGTCAGAGCCTTTCTATGTCCAGGTCTTGCTCTAATGCCTGGGTTCAAGTTTAAGGTCTTCTCTCGATTGTCATCTTCACTGATGAACCATTTATCTGATATCAGCTATGGAACGAAGTCCTGACTAGTTCAAACAAGATCCGGAAAGAAACATGTAGACTCATCTGAATCCTG-AATCCACCCCCTtctct------ctctctctctctctctctctctGGCTCAATTACATAGATGG-----GTCACAGAAAAA---------------------------TGCCCTATTGA---GTAGGTTTGACCT---------------TCATGCAGGA-----------CAACTAATTCACAATAAAGAAGAAAGTC-TCAGATGCTGTTACTCAAAGGTC---AATGAAACATGGTGGTTTGGACCTTGGAAGTGTTCTGCAGCTGCTCTAAGGCCTGGAGGTTGATGGCTCTGCAGCTGACATATAGATGATGGTGATGTGCTGTTGTAGACAAC--TACTGATCAAAAGCACAGCAAGGGTGAAGATGCATGAGTCATTATTAAGGTCATCCTGGAAGGCACA
s HiC_scaffold_1  96565971 585 + 233722169 AAATCACAGAGAATGCCAGCACATCCAACCTCCAGAAACTCCCT--GACCGGACTTCGCTCTGGTACCTTTAATCAGCTTCAAAGCATTCTGCAGGTACTGATCCTCTGTGATGGGCTGACCTTCCAACTTCAGCTCCAGCATGAAATCCCGTACAGTCCAGATGAAGCTGGGGAAGAAACTCACAAACTCTGTGGAATCTTTTACTCCATCAGAATTTGAGGAGGACTTTGCCCTGATTAGTTTTGTGAGCTCTGTCACATAACTAGACTTggttaaagaaaagaatattccCACTAATCATTCCTAGGCTTTCCTTATTAAAAAGTAGAATTAGCTTCTCTTTTACCCTAGGTCACTTATGATCCACCAAACTCAAATAagccacagagaagaaaaaaataattcaatattatTTCCCAAAAATCTCCAGTGTTATCTGGTGGCTGAGGTCCAGGAAGGATACTACAGCTGCTCCAGGGCCTGGTGGTTGATGGTGCC-------------------------CATGCTGTTGTAGACAAAGGTGCTGCTCAGAAGCACAGCTAAGGCGAAGATCCAGGAGTCATTCACAGAGTCGCCCTAGAGAGCACA

a score=12446
s chr3           142524492 544 + 160039680 AATAATAGAGATTAGAAGACCCTGCTGTCAGAGCC---TTTCTATGTCCAGGTCTTGCTCTA-ATGCCTGGGTTCAAGTTTAAGGTCTTCTCTCGATTGTCATCTTCACTGATGAACCATTTATCTGATATCAGCTATGGAACGAAGTCCTGACTAGTTCAAACAAGATCCGGAAAGAAACATGTAGACTCATCTGAATCCTGAATCCACCCCCT----------------tctctctctctctctctctctctctctGGCTCAATTACATAGATGGG-TCACAGAAAA---------------------ATGCCCTATTGAGTAGGT-----------------------------TTGACCT-------TCATGCAGGACAACTAATTCACAATAAAGAAGAAAGTCTCAGATGCTGTTACTCAAAGGTCAATGAAACATGGTGGTTTGGACCTTGGAAGTGTTCTGCAGCTGCTCTAAGGCCTGGAGGTTGATGGCTCTGCAGCTGACATATAGATGATGGTGATGTGCTGTTGTAGACAAC--TACTGATCAAAAGCACAGCAAGGGTGAAGATGCATGAGTCATTATTAAGGTCATCCTGGAAGGCACATGAGGGCAAA
s HiC_scaffold_1  96456316 589 + 233722169 AATGATAGGGCTTACTTGATCCCACAGCTAGAATGAAGCTTCCCCAGCTAGGCCACGTCCTATGTACCTGGAATCAGCTTCAAGGCATTCTCCAGGTACTGATCTTCTGTGATGGGGTATCCATCTAACTTCAGCTCCAGGATGAAATCCCGAACAGCCCAAACAAAGTCTGGAAAGAAACTCACAAACTCATCAGAGTC----ATCCATTTCCTCAAAATTTGTAGTGGATTTTGCTCTGATTAACTCTGT-----TAGTTCAGTCACATAGCTGGGATCTTAGCTAAGGAATGAGAGGTACCATATTCATATCCTAATTTACAAGTCCCCAAAACCAATTTCTAAGCCTTCGCTACTGTCCTGGGCACCTCAAGCATAAGAACCGAGTCACTTGGACAAAGATGGTCTCATTGACTCTT-CCCATAAATCAATTACACTTGTTGGCTCAGCTCCTAGAAGGATACTGCAGCTGCTCCAGGGCCTGGTGGTTGATGGTGCT-------------------------CATGCTGTTATAGACAAAGGTGCTGCTCAGAAGCACGGCCAGAGCAAAGATCCAGGAGTCATTCTTAGGGTCCCTCtagaaagcacaggagagcaaa

a score=7725
s chr3           142524520 506 + 160039680 CAGAGCCTTTCTATGTCCAGGTCTTGCTCTAATGCCTGGGTTCAAGTTTAAGGTCTTCTCTCGATTGTCATCTTCACTGATGAACCATTTATCTGATATCAGCTATGGAACGAAGTCCTGACTAGTTCAAACAAGATCCGGAAAGAAACATGTAGACTCATCTGAATCCTG-AATCCACC---------------CCCTtctctctctctctctct---ctctctctct------GGCTCAATTACATAGATGGGT-----CACAGAAAAATGC---------CCTATTGA---GTAGGTTTGACCTTC----------------ATGCAGGA-----------CAACTAATTCACAATAAAGAAGAAAGTC--TCAGATGCTGTTACTCAAAGGTC---AATGAAACATGGTGGTTTGGACCTTGGAAGTGTTCTGCAGCTGCTCTAAGGCCTGGAGGTTGATGGCTCTGCAGCTGACATATAGATGATGGTGATGTGCTGTTGTAGACAAC--TACTGATCAAAAGCACAGCAAGGGTGAAGATGCATGAGTCATTATTAAGGTCATCCTGGAAGGCACA
s HiC_scaffold_1  96659809 556 + 233722169 CAGAAACTCCCTG-ACCCAGACTTTGCTCTGGTACCTTTAATCAGCTTCAAGGCATGCTCCAGGTACTGATCCGCTGTCACAGGCTGATCTTGCAACTTCAGCTCCAGAGTGAAATCCCGAACAGTCCAGATGAAGCTGGGGAAGAAACTCACAAACTCTGTGGAATCTTTTACTCCATCAGAATTTGAGGAGGACTTTGCCCTGATTAGTTCTGTGAGTTCTGTCACGTAACTAGACTTggttaaagaaaagaatattccTACTAATAATTGCTAGGTTCTCCTtattaaaatgtatcattaaCATTCTCTTTTATCCTAGGTCACTCATGATCCACCAAACTCAAATAagccacagagaagaaaaaaagtaattcaaTACTATTTTCCCAAAACCTCTAGTATCATCTGGTGGCTGAGGTCCTGAAAGGATACTACAGCTGCTCCAGGGCCTGGTGGTTGATCGTGCC-------------------------CATGCTGTTGTAGACAAAGGTACTGCTCAGAAGCACGGCCAGGGCGAAGATCCAGGAGTCATTCTTAGGATCACCCTAGAAAGCACA

a score=7475
s chr3           142524536 490 + 160039680 CCAGGTCTTGCTCTAATGCCTGGGTTCAAGTTTAAGGTCTTCTCTCGATTGTCATCTTCACTGATGAACCATTTATCTGATATCAGCTATGGAACGAAGTCCTGACTAGTTCAAACAAGATCCGGAAAGAAACATGTAGACTCATCTGAATCCTGAATCCACCCC--------------CTtctctctctctctctctctctctctctGGCTCAATTACATAGATGG-----GTCACAGAAAAA---------------------------TGCCCTATTGA---GTAGG-------------TTTGACCT---TCATGCAGGA--CAACTAATTCA------CAATAAAGAAGAAAGTCTCAGATGCTGTTACTCAAAGGTCAATGAAACATGGTGGTTTGGACCTTGGAAGTGTTCTGCAGCTGCTCTAAGGCCTGGAGGTTGATGGCTCTGCAGCTGACATATAGATGATGGTGATGTGCTGTTGTAGACAAC--TACTGATCAAAAGCACAGCAAGGGTGAAGATGCATGAGTCATTATTAAGGTCATCCTGGAAGGCACA
s HiC_scaffold_1  96582852 527 + 233722169 CCGGACTTTGCTCTGGTACCTTTCATCAGTTTCAAGGCATTCTCCAGGTACTGATCCTC--TGATAGGCTGACCTTGCAACTTCAGCTCCAGCTTAAAATCCCGTACAGTCCAGACAAAACTGGAGAAGAAACTCACAAACTCTGTAGAATCTTGTATTTCATCAGAATTTGAGGAGGACTTTGCTCTGATTAGTTGTAT-------GAGCTCTGTCACATAACTAGACTTggttaaagaaaagaatattccTACAAATCATTCCTAGGCTTTCCTTATTAAAAAGTAGAATTAGCACTCTCTTTTACCCTAGGTCACTCATGATCCACCAAACTTAAATaagccacagagaaaaaaatttcaatatcaTTTCCTAAACCTCCAATGTCATCTGGTGGCTGAGGTCCTGAAATGATATCACAGCTGCTCCAGGGCCTGGTGGTTGATGG-----------------------------TGCCATGCTGTAGACAATGATGCTGCTCAGAAGCACAGCCAGGGCAAACATCCAGGAGTCATTCTTAGGGTCACCCTAGAAAGCACA

a score=8762
s chr3           142524544 491 + 160039680 TGCTCTAATGCCTGGGTTCAAGTTTAAGGTCTTCTCTCGATTGTCATCTTCACTGATGAACCATTTATCTGATATCAGCTATGGAACGAAGTCCTGACTAGTTCAAACAAGATCCGGAAAGAAACATGTAGACTC---------ATCTGAATCCT--GAATCCACCCCCTtctctctctctct---ctctctctctc--------tctGGCTCAA------------TTACATAGA------------TGGGTCACAGAAAAATGCCCTA------------TTGAGTAGGTT---TGACCTTCATGCAGGACAACTAATTCACAA--TAAAGAAGAAA-GTCTCAG-ATGCTGTTACTCAAAGGTCAATGAAACATGGTGGTTTGGACCTTGGAAGTGTTCTGCAGCTGCTCTAAGGCCTGGAGGTTGATGGCTCTGCAGCTGACATATAGATGATGGTGATGTGCTGTTGTAGACAA------CTACTGATCAAAAGCACAGCAAGGGTGAAGATGCATGAGTCATTATTAAGGTCATCCTGGAAGGCACATGAGGGCAA
s HiC_scaffold_1  96804582 535 + 233722169 TGCTCTGGCACCTTGAATCAGCTTCAAGGCATTCTCTAGGTATTGATCTTCTATAACGGAATCATCACCCAATTTCAGCTGGAGAGTGA-GTCTTGTACAGCCCAGATGAACTCTGGGAA-AAACTCATAAACTCTGCATCTCCATCAGAATTTGAGGAAGGCTTTGCCTTGGTTGGTTCTGTGAGCTCCGTCACATAACTAGAACTTGGCTAAGGAAAGTGAAATTTTACTTAAAACCCCCcacatttaattaataaaaaattaccaTAGCAATGTTTTACTTTCCTAGGTTCCCTGTGCTCCACCAAAAGCAAGCAAGTGACAGggtaaggaaaaaataactcaataTTCATCTCCTCAAAACCCATTAACACATAGTGGCTCAGCTCCTGGAAGGATACTGCAGCTGCTCCAGGGCCTGGTGGTTGATGGT------GCCCACA-------------------CTGTTGTAGACAAAGGTGCTTGCTGCTCAGAAGCATGGCCAGGGCAAAGATTCAGGAATCATTCTTAGGGTCACCCtagaaagcacaggagagcaa

a score=7700
s chr3           142534521 198 + 160039680 CATGGCATCTGGTCCCAACATGGAGGCTCCTGTGTGCCTAGTGGAAAATGAGAATGAAGAACTGAGGGTGAACTCCAAAGCAATAAACATTCTTGAGAGGATCACTCAGCCTGTAGTGGTGGTGGCCATTGTAGGACTATACCGTACGGGAAAATCCTACTTGATGAACCGCTTGGCAGGACAGAACCATGGTAAGTG
s HiC_scaffold_1  96770026 198 + 233722169 CATGGCCTCCCAGACCCACCTGCCAGCCCCAGTGTGCCTCATTGAGAATATGAAAGGGCAGCTGAAGGTGAATCAGGAAGCTCTGAGCATCCTGTCTGCCATCACCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGTCGGCTGGGAAGAAAAAGGGTGAGTG

a score=6265
s chr3           142534522 208 + 160039680 ATGGCATCTGGTCCCAACATGGAGGCTCCTGTGTGCCTAGTGGAAAATGAGAATGAAGAACTGAGGGTGAACTCCAAAGCAATAAACATTCTTGAGAGGATCACTCAGCCTGTAGTGGTGGTGGCCATTGTAGGACTATACCGTACGGGAAAATCCTACTTGATGAACCGCTTGGCAGGACAGAACCATGGTAAGTGTGGTCCTCAGA
s HiC_scaffold_1  96738040 208 + 233722169 ATGGCACCACACATCCACATGCCAGAGCCCTTGTGCTTCATTGAGAACACTGAGGAGAAGCTGGTGGTTAAACAAGAAGCTCTGAGCATCCTGTCTGCCATCAGCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGCAAGAATAAAGGTGAGTGCCATCGGCAAA

a score=6597
s chr3           142536279 149 + 160039680 CATATTCTCTCACACAGGCTTCAATCTGGGCACCACAGTTAGGTCTGAAACTAAGGGCATCTGGATGTGGTGTGTGCCTCACCCCAGCAAGCCCAAGTTCACACTCGTGCTTCTGGACACGGAGGGCTTAGGAGATGTGGAAAAGGTAG
s HiC_scaffold_1  96740158 149 + 233722169 CAAACTCTCCTTTGCAGGCTTTTCTGTTGGCTCTACGGTGCAGTCCCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCATCCTGAGAAGCCAGACCACACCCTTGTCTTGCTTGACACTGAGGGTCTGGGAGACGTAGAGAAGGTAG

a score=5955
s chr3           142536293 133 + 160039680 CAGGCTTCAATCTGGGCACCACAGTTAGGTCTGAAACTAAGGGCATCTGGATGTGGTGTGTGCCTCACCCCAGCAAGCCCAAGTTCACACTCGTGCTTCTGGACACGGAGGGCTTAGGAGATGTGGAAAAGGT
s HiC_scaffold_1  96770943 133 + 233722169 CAGGCTTCTCTCTGGGCTCCACGGTGCAGGCCCACATCACAGGAATCTGGATGTGGTGTGTGCCTCATCCCAAGAAGCCAGATCAGACTCTAGTTCTGCTTGAAACCAAGGGCCTGGGAGATGTTGAGAAAGT

a score=6411
s chr3           142537982 158 + 160039680 GAAGTTCTTTGCCCTTATG-TGCTCTCCAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCACCAGGCCCTGGAGCAGCTGCAGTATCCTTCCAGGGACCAA
s HiC_scaffold_1  96741072 159 + 233722169 gatgttttttaaatttgttctgaCTTCCAGGTTGATGATAAGAATGACGCCCAGATCTTCGCCCTGGCAATTCTGCTGAGCAGCACTTTTGTATACAACACCATGAACAAAATTGACCAGGGTGCTATCGACCTACTGCAGTATCCTTTTGTGGCTCAA

a score=9299
s chr3           142537997 150 + 160039680 TATGTGCTCTC---CAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCACCAGGCCCTGGAGCAGCTGCAGTATCCTTCCAG-GGACCAAATTGCCA
s HiC_scaffold_1  96772230 154 + 233722169 TGTGTGCTTTCTCCCAGAGTGACCCCTGGAATGACTCCTGGATCTTCACCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTCTTGTGGTCCAGAACACCA

a score=8744
s chr3           142538001 128 + 160039680 TGCTCTCCAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCACCAGGCCCTGGAGCAGCTGCAGTATCCTT
s HiC_scaffold_1 128768552 128 + 233722169 TGGCCTGCAGAGTTACCCCCAGAATGACTCCTGGATCTTCACCCTGGCAATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAGCCATCAACCATAAGGCCCTGGACCAGATGCAGTATCCTT

a score=8755
s chr3           142538001 128 + 160039680 TGCTCTCCAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCACCAGGCCCTGGAGCAGCTGCAGTATCCTT
s HiC_scaffold_1  96780866 128 + 233722169 TGATTTCCAGGATGACAACCAGAACGACTCCTGGATCTTTGCCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTT

a score=7904
s chr3           142538656 265 + 160039680 TGGATTTGTAAGAAAAATGTGGGA-GAAGTAGAGTAGTGCCTTC-----TATTCCTTAGCTAAGGTCCCAGCTATGTCACAGAACTGACAGAGCGGATCAGGGCAAAGTCCACTTCACGGTCTGAAGAAGTGGATGACTCTGATGAGTTTGTAAGTTTCTTTCCAGATTTTATCTGGACTGTTCGAGATTTCGTTCTGGAGCTGAAGTTAGAGGGACGTGTCATCACAGCAGACGAGTACCTAGAAAATGCCCTGAAGCTGATCCCAGGTA
s HiC_scaffold_1  96781166 266 + 233722169 tgGATTTGTTAAATTAGTGTGGTATGAAGGGCCCTGCTACTTTTGCCAGTTTTCCTTAGCT-----CTCAGCTATGTGACTGAACTGACAGACCGAATCCGAGCAAAATCCTCACCCAACACGAGTGAAGTTCAAGATTCAGCTGACTTCATGAGCTTCTTCCCAGACTTTGTGTGGACACTGAGAGATTTCTCCCTAGAATTAGAAATAGATGGAGATTCCATTTCTCCAGATGCTTACCTGGAGAATTCTCTGAAGCTAAAAAAAGGTA

a score=6058
s chr3           142538701 209 + 160039680 TTCCTTAGCTAAGGTCCCAGCTATGTCACAGAACTGACAGAGCGGATCAGGGCAAAGTCCACTTCACGGTCTGAAGAAGTGGATGACTCTGATGAGTTTGTAAGTTTCTTTCCAGATTTTATCTGGACTGTTCGAGATTTCGTTCTGGAGCTGAAGTTAGAGGGACGTGTCATCACAGCAGACGAGTACCTAGAAAATGCCCTGAAGCT
s HiC_scaffold_1  96741454 208 + 233722169 TTCCTTAATTGCA-TCTCAGCAATGTGACAGAACTCACAGATCTGCTCAGAGCAAGAAACTCACCTGTtattaatgagaatgaagataaTAATGACTTAATGAGCTTCTTTCCAGACTTGGTATGGACTTTAAGAGATTTCTACCTAAGCCTAGAAGCAGGTGGAAAAGTCATCACACCAGATCAATACCTGGAGAACTCATTGAAACT

a score=7427
s chr3           142538701 226 + 160039680 TTCCTTAGCTAAGGTCCCAGCTATGTCACAGAACTGACAGAGCGGATCAGGGCAAAGTCCACTTCACGGTCTGAAGAAGTGGATGACTCTGATGAGTTTGTAAGTTTCTTTCCAGATTTTATCTGGACTGTTCGAGATTTCGTTCTGGAGCTGAAGTTAGAGGGACGTGTCATCACAGCAGACGAGTACCTAGAAAATGCCCTGAAGCTGATCCCAGGTATCAAAG
s HiC_scaffold_1 128768909 222 + 233722169 TTCCTTAGCT----CCTCAGCTATTTCAGAGAGCTGAAAGGCCTGATCAGAGCAAAATCCTCACCTGACACCAATGAGACTGAAGATTCAGTTGGCTTAATGAGCTTCTTCCCAGACTTTGTGTGGGCGCTGAGAGATTTCTCCCATGACTTGGAGCTAGAGGGACAGAGCATCTTTGCTGAAACCCACTTGGAGAATGCCCTAAAGCTAAAGCAAGGTAGCAGAG

a score=9113
s chr3           142538701 219 + 160039680 TTCCTTAGCTAAGGTCCCAGCTATGTCACAGAACTGACAGAGCGGATCAGGGCAAAGTCCACTTCACGGTCTGAAGAAGTGGATGACTCTGATGAGTTTGTAAGTTTCTTTCCAGATTTTATCTGGACTGTTCGAGATTTCGTTCTGGAGCTGAAGTTAGAGGGACGTGTCATCACAGCAGACGAGTACCTAGAAAATGCCCTGAAGCTGATCCCAGGT
s HiC_scaffold_1  96772596 215 + 233722169 TTTCTTAGCC----TCTCAGCTGTGTCACAGAGCTGACAGATCTGATCAGAGCAAAATCCTCACCTGACACAGATAAGACTGAAGACTCAGCTGACTTTGTGAACTTCTTCCCAGATTTTGTGAGGACTCTGAGAGATTTCTGCCTGGAACTGACACTAGATGGACAGAGCATCTCTGCAGACAGCTACCTAGAGTATTCCTTGAAGCTGAAGCAAGGT

a score=5957
s chr3           142541319 387 + 160039680 TTCCAACAGCAAATCTCATTTATATGTATT-TTGCAGGCATGAGTATCAAAGCCCAGAAAGCTAACTTGCCTAGGGAATGCATCAGGCACTTCTTTCCAAGACGGAAGTGCTTTGTCTTTGATCGACCTACAAAAGACAAAGAACTTTTAGTGCATGTTGAGGAAATGCCAGAGGACCAGTTGGATCACAGTTTCCAAGTGCAGTCAAAAGAATTCTGTTCCTACATCTTCTCCAATTCGAAGGCCAAGACCTTGAAAGAGGGAATCGTTGTCAATGGAAACCGTGAGTCACCCTTGCCCCAGTTAACATCTCTTTACTTTAAAACGGTGTATTGTAAAACATTGATTATATGTTAGTATCTGATGTGATTACAAAGAAGCAGCTGTT
s HiC_scaffold_1  96781986 380 + 233722169 tTGCAGCAGGTAAacccttttttttatcttcttacaGGTACTGGTgagaatgttaaaaattataatctCCCCGGACTCTATATCTGCAAGTTCTTCCCAAAGAAGAAATGCTTTATCTTCGATAGATCCACTCATCCAAAGTAGCT---GGCCCAGCTCGAGACCCTGCACGATGATGAGCTGGATTCTGAATTCGTGGGGCAAGTTGCAGAATTCTGTTCTTACATCTTCAGCTCTGCCAGGACTAAAGCTCTTCCGGGAGGCATCCGTGTCAATGGACCTCGTGAGT-ACCCTTCCCACTAGTTTCACTCATTCACAGCAATGAggagcaaggaaaaaaaatgaatctgtTTCAGTTTCAGGT----TTGCTAATGAGCCACTATT

a score=6304
s chr3           142541326 281 + 160039680 AGCAAATCTCATTTATATGTATTTTGCAGGCATGAGTATCAAAGCCCAGAAAGCTAACTTGCCTAGGGAATGCATCAGGCACTTCTTTCCAAGACGGAAGTGCTTTGTCTTTGA----TCGACCTACAAAAGACAAAGAACTTTTAGTGCATGTTGAGGAAATGCCAGAGGACCAGTTGGATCAC-AGTTTCCAAGTGCAGTCAA---AAGAATTCTGTTCCTACATCTTCTCCAATTCGAAGGCCAAGACCTTGAAAGAGGGAATCGTTGTCAATGGAAACCGTGAGT
s HiC_scaffold_1  96742001 275 + 233722169 agtaaattctatttttct---ttcttcaggtaGCAATGAGAGAATTCAGCATTTCAATTTGCCCCGTCTGTGTATAAGGAAGTTCTTTCCAAGAAAGAAATGCTTTATCTTTGAGTCACCGGCTCACAAAAAGCAG----CTTTCCCAGC---TTGAAATGCTGCATGATGATGAGCTATATCCTGAGTTT----GTGCAACAAGTGGCAGAATTCTGTTCCTACATCTTCAACCACTCTGCAGCCAAGACTCTTCCAGGAGGCATCAAGGTCGATGGACCTCGTGAGT

a score=8070
s chr3           142542838 294 + 160039680 CTGCGGTTAGGACTGGCGACTCTGGTGACGACCTACGTGGATGCTATCAATAGTGGAGACGTGCCGTGTTTAGAGAACGCAGTAACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATACAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGAGAATCAGCAATTCCAGAAGAACTTGGTGGTA
s HiC_scaffold_1 128777331 278 + 233722169 CTATGTGTAGGTCTAGAGAGCCTGGTGCTGAGCTGTGTCAGTGCCATCAGCAGTGGGGATCTGCCCTGCATACAGAACGCAGTCCTGGCCTTGGCC-AGAGAGCGACCTCAGCTGCAGTGCAG---GCCTTGGTCCACTATGACCAGAAGCCAGGCCAGAGGGTGCAGCTGCCAACAGACACCCTGCAGGAGTAGCTGGACCTACAAAGGGCCTGTGAGAGGGAAACCATCAAGATCTTCATCAGAAATCCCT-------TGAAATTC-----CTTCAAAAGGATCTAGTGgta

a score=11858
s chr3           142542846 286 + 160039680 AGGACTGGCGACTCTGGTGACGACCTACGTGGATGCTATCAATAGTGGAGACGTGCCGTGTTTAGAGAACGCAGTAACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATACAGCC-TGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGAGAATCAGCAATTCCAGAAGAACTTGGTGGTA
s HiC_scaffold_1  96783088 287 + 233722169 AGGTCTTGAGAGCCTGGTATTGACCTATGTTGATGCCATCAGCAATGGGGAGCATCCCTGCATGGAGAATGCAGTCCGGGCCTTGGCCAAGAGGGAGAACTCAGCTGCTGTGCAGAAGGCCTTGGACCACTATGACCAGCAGATGGGTCTGAAGGTGCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTTGTGAGAGGGAGGTCACTGAGATCTTCATCCAACATTCCTTCAAAGATGTTGGCCAGGTATTTCAAAAGGATTTTGCAGTA

a score=11830
s chr3           142542846 315 + 160039680 AGGACTGGCGACTCTGGTGACGACCTACGTGGATGCTATCAATAGTGGAGACGTGCCGTGTTTAGAGAACGCAGTAACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATACAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGAGAATCAGCAATTCCAGAAGAACTTGGTGGTACTGAAAACTGCCTTTTCTGTTCTATTCCA
s HiC_scaffold_1  96743313 315 + 233722169 AGGTCTACAGAGCCTGGCACAGACCTATGTCAATGCCATCAACAATGGGGATCTGCCCTGCATGGAGAATTCAGTCCTAGCATTGGTGCAGACAGAGAACTTAGCTGCAGTGCAGAAGGCCTTGGCCCACTATGACCAGCAGATGGGCCAGAAGGTTCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTGTGAGAGGGAGGCCTTGGAAATATTCACAAAGTACTCTTTCAAGgatgaggaccaaagcttccaGAAGGAATTACAGGTAATtaatattattgttgtttgtctaATACA

a score=11211
s chr3           142542846 286 + 160039680 AGGACTGGCGACTCTGGTGACGACCTACGTGGATGCTATCAATAGTGGAGACGTGCCGTGTTTAGAGAACGCAGTAACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATACAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGAG--------AATCAGCAATTCCAGAAGAACTTGGTGGTA
s HiC_scaffold_1  96775477 291 + 233722169 AGGTCTAAAGAACCTGGTGATGACCTACATCAGTGCCATCAGCAGTGGGGAACTGCCCTGCATAGAGAATGCAGTCTGGGCCTTGGCCCAGATAGAGAACTCAGCCGCTGTGCAGAAGGCCTTGGCCTACTGTAACCAGCAGATGGACAAGAAGGTGCAGCTGCCCACAGACACCCTCCAAGAGCTGCTGGACCTGCACAGGGCCTGTGAGGGGGAGGCCATCAAGA---TCATGAAACATTCCTTCATAAAGGAATACATATTGACTAAGAATTTCAAGAGGGATTGCTGGTA

a score=5200
s chr3           142561762 209 + 160039680 CATGGAGGCACCCATTTGTCTGGTGGAAAATTGGAAAAATCAGCTGACAGTAAATCTGGAAGCCATAAGGATTCT-TGAGCAGATAGCACAGCCTCTGGTGGTGGTGGCCATTGTTGGTTTATATCGTACAGGGAAGTCCTACCTCATGAATCGTCTTGCAGGACGGAACCATGGTGAGTGTCCTTGGGGTGTATAGGGATAATTTCCTT
s HiC_scaffold_1  96738057 203 + 233722169 CATGCCAGAGCCCTTGTGCTTCATTGAGAACACTGAGGAGAAGCTGGTGGTTAAACAAGAAGCTCTGAGCATCCTGTCTGCCATCAGC-CAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGCAAGAATAAAGGTGAGTGCCATCGG------CAAAGATGACTCCCTT

a score=5854
s chr3           142561769 175 + 160039680 GCACCCATTTGTCTGGTGGAAAATTGGAAAAATCAGCTGACAGTAAATCTGGAAGCCATAAGGATTCTTGAGCAGATAGCACAGCCTCTGGTGGTGGTGGCCATTGTTGGTTTATATCGTACAGGGAAGTCCTACCTCATGAATCGTCTTGCAGGACGGAACCATGGTGAGTGTC
s HiC_scaffold_1  96770051 175 + 233722169 GCCCCAGTGTGCCTCATTGAGAATATGAAAGGGCAGCTGAAGGTGAATCAGGAAGCTCTGAGCATCCTGTCTGCCATCACCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGTCGGCTGGGAAGAAAAAGGGTGAGTGCC

a score=10505
s chr3           142564059 1387 + 160039680 CTGGTCTTCCTGCTGTGACCCTTTTCTGTTTTCCTCTCACCTTT--AGGCTTCTCCTTGGGCTCCACAGTGCAATCCGAAACCAAGGGTATCTGGATGTGGTGTGTGCCCCATCCCACCAAGCCAACACACACCCTGGTCCTTTTGGACACTGAAGGCCTTGGTGATGTAGAAAAGGT--------GAGGTACTGTCTTCGCTAATACAATGACATCTTGCTCTAAATTCTCAGATTAACCCCCCCCCCATGTGCCTTTCTATGCCTTTTTGTTGTTGTTTATAATCTTGACTGTCTTCCTAGCACAATTGACATTATGGTT---GTATTTATCTGTTGACAAGTTTATTTGCTATTATTA---------------CAAAAAGTTATTTTTCAGAAGGC---------------AACTATGTTGAATTTGCTAGCCACAAAACATGCCTCTGCATTTTGTCAGA---GGTACAGGAAGAGTTACAT---TTAATGAAATA---------------GGGTTTGTGTCTA-----------------TAATTGAGATAAATTTAT------AAAGGTATAACTGCCCGTTTT---TTTTTTTTTTCATT--GCCTACTGTATTCTAGGCACTTAG-GAAATG-----------------------------TTTTATACACAATGAATATCTTGTCT-----------------------------TTTTATCAGTCATTTCTCAGAACTAAACTCAGGGCTTTGTGCATCTACCACTAAGCTATAGCCTAACAACTAATCT-----------------ATAGTTAAT-TTAATTGCTAGAGGAGCAAATGGCATGAGATGGATCAGTGTAAGTATTAGGAATGAGGGCTGAATGTAGCAGTATCTTCCAATTTTGTTATTTCTCTCAGATTCAC---TGATAGTGTAGCTGAAAGAATAAACAATGGGa--tgattggatgaatgaatg------gaagaatggatggatgaatgaatgaatgaCCATGAGACTCTTTATTTGCTTGCCCTTCCCTATGTACTCTCCAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCAGCAGGCCCTGGAGCAGCTGCAGTATCCTTCCAGGGACCAAATTGCCGTGTTTCATTGAGTGTAGGAAGAAGGCAACTTACTGCCC---------GTTGTTTGGTCT-------------------AAGTCAGTAAGTCTTG-AATTACAGTA-----------------GGCTCAGACAAAGGGACTATTC---------------------TTAATAATTGAGACTACATG-----------AGACCTGGAAGATATTTTGTTTC------ATATCCTTAGCTATAATCACAGTTTTGTGACTGAATTAACACAGCTAATCCGGGCAAAATCGAGCCC---------CAGAGAGGACAAAGTGAAGGACTCCAGTGAGTTTGTAGGTTTCTTCCCAGACTTTATCTGGGCTGTTCGAGATTTTGCTCTGGAGCTGAAGTTAAATGGTCGGCCCATCACAGAAGATGAGTACCTGGAGAATGCCCTGAAGCTGATCCAAGGTA
s HiC_scaffold_1  96740127 1546 + 233722169 CTATTCATTCTGCCGAGACCTTTATTAATGGCAAACTCTCCTTTGCAGGCTTTTCTGTTGGCTCTACGGTGCAGTCCCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCATCCTGAGAAGCCAGACCACACCCTTGTCTTGCTTGACACTGAGGGTCTGGGAGACGTAGAGAAGGTAGAGGAGAAAGATTCTTATTTGACCAACCTGTTCAT------CTCTAAATGTTC------------------TTTATGCTTGTAGGCTTTATTGttgctactgtt--------ttgttttataaacacaTGCTTCTCCTTGATTAGAgtatatctctttt------tttcctttctatttttaatggtAAGAGTCTtgaaaaaagatatattt-ataagGTAAAATCAGTATGAAGAATTATACTGGATATGCAAG--ACAAA----GCTTCAGATATGTGCAAGAATTGGCTCACATAAGCTCATATAAATCAATTATATATATCTTTTAAGTGtgaattttgtgtttactttGATAGCCTGAAATCAGTTCTGATcaaattattttggaaatggTTCAGTGGTACAAATCAAGGCATTTTTCTCAGTGAGCCTTGTGGATAATAGTTACTCAATAAAATGCAGGCGAGTATTACAAGTATAGGCCAAATTTTTAGAACCTGGAAAAACCTTGATTGTAAGTAGTTAAACAAGATGCTCTGAAGATCTTGTCTGTCATCACCCAGCCTGGCATACATAGTATT----AGCTATCATGGACCTCCA---TGATAACTAATTCGAAtactcattttgaaaatatttaacagtAGTTACAAAAGGAGCA------ATGAGTT--AACAATGTATG-AACAGATATAAAATCCCCAGTGAGAAAGCCTCACTAAGTTCATTGTGTCTGACAG--TGacttttgtttgtcttgtttaatGTTTGTGTACTAGgatcttactttttaaatgacTGCTCACCTTAGAATG---------------------CCATgagatgttttttaaatttgttctgaC---------TTCCAGGTTGATGATAAGAATGACGCCCAGATCTTCGCCCTGGCAATTCTGCTGAGCAGCACTTTTGTATACAACACCATGAACAAAATTGACCAGGGTGCTATCGACCTACTGCAGTATCCTTTTGTGGCTCAAGATA-----------GGAGAACAGCCAGAGAGATCTGTACTCACCAGCTATATGGCTGTGAGATCTtgcaaatcacaaaaataaaaatttgataatctttgaaaatacaatataaataaacCTCATATTGGCTATGATAAAAGGTCAGTTTGGTTAAgtgggagagagaaaataaatgtttgaggagacaGGGAATAAAATATAGATTTAGGTGTTGTTCTATTTTTGTGAACTTTCCTTAATTGC-ATCTCAGCAATGTGACAGAACTCACAGATCTGCTCAGAGCAAGA---AACTCACCTGTtattaatgagaatgaagataa------TAATGACTTAATGAGCTTCTTTCCAGACTTGGTATGGACTTTAAGAGATTTCTACCTAAGCCTAGAAGCAGGTGGAAAAGTCATCACACCAGATCAATACCTGGAGAACTCATTGAAACTCAAAGAAGGTA

a score=7396
s chr3           142564088 151 + 160039680 TTTCCTCTCACCTTT-------AGGCTTCTCCTTGGGCTCCACAGTGCAATCCGAAACCAAGGGTATCTGGATGTGGTGTGTGCCCCATCCCACCAAGCCAACACACACCCTGGTCCTTTTGGACACTGAAGGCCTTGGTGATGTAGAAAAGGTGAGG
s HiC_scaffold_1  96770922 158 + 233722169 TCTCATCTCACCCGTGTTTTGCAGGCTTCTCTCTGGGCTCCACGGTGCAGGCCCACATCACAGGAATCTGGATGTGGTGTGTGCCTCATCCCAAGAAGCCAGATCAGACTCTAGTTCTGCTTGAAACCAAGGGCCTGGGAGATGTTGAGAAAGTCAGG

a score=13875
s chr3           142564933 517 + 160039680 TATGTACTCTC---CAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCAGCAGGCCCTGGAGCAGCTGCAGTATCCTTCCAG-GGACCAAATTGCCGTGTTTCATTGAGTGTAGGAAGAAGGC-----------AACTTACTGCCCGTTGTTTGGTCTAAGTCAGTAAGTCTTGAATTACAGTAGGCTCAGACAA---------------AGGGAC-------TATTCTTAATAATTGAGACT------------------ACATGAGACCTGGAAGAT--------------------------ATTTTGTTTCATATCCTTAGCTATAATCACAGTTTTGTGACTGAATTAACACAGCTAATCCGGGCAAAATCGAGCCCCAGAGAGGACAAAGTGAAGGACTCCAGTGAGTTTGTAGGTTTCTTCCCAGACTTTATCTGGGCTGTTCGAGATTTTGCTCTGGAGCTGAAGTTAAATGGTCGGCCCATCACAGAAGATGAGTACCTGGAGAATGCCCTGAAGCTGATCCAAGGTACCAG
s HiC_scaffold_1  96772230 586 + 233722169 TGTGTGCTTTCTCCCAGAGTGACCCCTGGAATGACTCCTGGATCTTCACCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTCTTGTGGTCCAGAACAC-------CAGTAAAAGTAGATAAGAAACCTTTTTTAGTAAACCAGCCACCTAACTCTGGATCCTGGTGGGCTATACTc-aagaacagaaaacataaacaataaCTTATGTGCAAGAAAGACTCATGTATCTACTAAAGAAATGACACTCATGTTAAGAACAAAGGCAAATGAAACCTTGGGGATTCATATAGTGAAGGGAGGTCTTGTTATTTTTGCCAGGTTTTCTTAGCC----TCTCAGCTGTGTCACAGAGCTGACAGATCTGATCAGAGCAAAATCCTCACCTGACACAGATAAGACTGAAGACTCAGCTGACTTTGTGAACTTCTTCCCAGATTTTGTGAGGACTCTGAGAGATTTCTGCCTGGAACTGACACTAGATGGACAGAGCATCTCTGCAGACAGCTACCTAGAGTATTCCTTGAAGCTGAAGCAAGGTGGTAG

a score=13120
s chr3           142564940 506 + 160039680 TCTCCAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCAGCAGGCCCTGGAGCAGCTGCAGTATCCTT-------CCAGGGACCAAATTGCCGTGTTTCATTGAGTG-----------------TAGG------------------AAGAAGGCAACTTACTGCCCGTTGTTTGGTCTAAGTCAGTAAGTCTT-------------------GAATTACAGT-------------AGGCTCAGACAAAGG-----GACTATTCTTAATAATTGAGACTACATGAGACCTGGAAGATATTTTGTTTCATATCCTTAGCTATAATCACAGTTTTGTGACTGAATTAACACAGCTAATCCGGGCAAAATCGAGCCCCAGAGAGGACAAAGTGAAGGACTCCAGTGAGTTTGTAGGTTTCTTCCCAGACTTTATCTGGGCTGTTCGAGATTTTGCTCTGGAGCTGAAGTTAAATGGTCGGCCCATCACAGAAGATGAGTACCTGGAGAATGCCCTGAAGCTGATCCAAGGTA
s HiC_scaffold_1  96780869 563 + 233722169 TTTCCAGGATGACAACCAGAACGACTCCTGGATCTTTGCCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTTGTGTAGTCCAGGAGGAGAGACCCGTG------TGAGTAAACCAGCCACACGGCTCTAGGCCCTGGGACAGCCAgcccaaaaagacaaa--acagca------tTAATTCAAGTCAGGAAACACTCGTCATATACTTACTAAAGAAATCACACTTCGGTTaagaacaagaataaaataaaagcttgtgGATTTGTTAAATTAGTGTGGTATGAAGGGCCCTGCTA---CTTTTGCCAGTTTTCCTTAGC-----TCTCAGCTATGTGACTGAACTGACAGACCGAATCCGAGCAAAATCCTCACCCAACACGAGTGAAGTTCAAGATTCAGCTGACTTCATGAGCTTCTTCCCAGACTTTGTGTGGACACTGAGAGATTTCTCCCTAGAATTAGAAATAGATGGAGATTCCATTTCTCCAGATGCTTACCTGGAGAATTCTCTGAAGCTAAAAAAAGGTA

a score=10966
s chr3           142564941 509 + 160039680 CTCCAGGGTGACCCTAAGAATGACTCGTGGATCTTCGCCCTGGCTGTGCTTCTGAGCAGCACCTTTGTCTACAACAGCATGAGCACCATCAACCAGCAGGCCCTGGAGCAGCTGCAGTATCCTT----------------CCAGG-------GACCAAATTGCCGTGTTTCATTGAGTGTAGGAAGAAGGCAACTTACT-----GCCCGTT---GTTTGGTCTAAGTCAGTAAGTCTTGAATTACAG--TAGGCTCAGA-----------------------CAAAGGGACTATTCTTAATAATTG-----------------AGACTACATGAGACCTGGAAGAT-------ATTTTGTTTCATATCCTTAGCTATAATCACAGTTTTGTGACTGAATTAACACAGCTAATCCGGGCAAAATCGAGCCCCAGAGAGGACAAAGTGAAGGACTCCAGTGAGTTTGTAGGTTTCTTCCCAGACTTTATCTGGGCTGTTCGAGATTTTGCTCTGGAGCTGAAGTTAAATGGTCGGCCCATCACAGAAGATGAGTACCTGGAGAATGCCCTGAAGCTGATCCAAGGTACCAG
s HiC_scaffold_1 128768556 573 + 233722169 CTGCAGAGTTACCCCCAGAATGACTCCTGGATCTTCACCCTGGCAATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAGCCATCAACCATAAGGCCCTGGACCAGATGCAGTATCCTTTTTATGGTCTAGAACACCAGGACAAGCAAACAAAAGACCTGTGT-----------TAGTAAATCAACCACTGACTCTGGATCCTGGTGAAGCCcgctcaaaaacag-aaaacataaacaataaCTTAGGCGCAGAGAAGGTTCATGTATCTACTGAAGAAAAGGCACTCATGTTGGCAAATATAGGTTTCGGAATTCGTTGAATAAATACGGCATGGGAGGTTCTGTTATCTTTGCCAGTTTTCCTTAGCT----CCTCAGCTATTTCAGAGAGCTGAAAGGCCTGATCAGAGCAAAATCCTCACCTGACACCAATGAGACTGAAGATTCAGTTGGCTTAATGAGCTTCTTCCCAGACTTTGTGTGGGCGCTGAGAGATTTCTCCCATGACTTGGAGCTAGAGGGACAGAGCATCTTTGCTGAAACCCACTTGGAGAATGCCCTAAAGCTAAAGCAAGGTAGCAG

a score=6449
s chr3           142566325 279 + 160039680 ttttttttttttcttttCAGGAGACAATCTCAAAGTCCAACAGTCCAACATGACCAGAGAATGTATCAGATATTTTTTTCCGGTACGGAAGTGCTTTGTCTTTGA----CAGGCCCACAAGCGACAAACGTTTATTGCTCCAAATTGAAAATGTTCCA-GAAAACCAACTGGAACGGAATTTCCAGGTTGAATCAGAAAAATTCTGTTCCTACATCTTCACCAACGGCAAGACCAAGACTCTGAGAGGGGGAGTCATTGTCACAGGAAATCGTGAGTTTCTCTT
s HiC_scaffold_1  96742007 276 + 233722169 ttctatttttctttcttcaggtaGCAATGAGAGAATTCAGCATTTCAATTTGCCCCGTCTGTGTATAAGGAAGTTCTTTCCAAGAAAGAAATGCTTTATCTTTGAGTCACCGGCTCACAAAAAGCA---GCTT-----TCCCAGCTTGAAATGCTGCATGATGATGAGCTATATCCTGAGTTTGTGCAACAAGTGGCAGAATTCTGTTCCTACATCTTCAACCACTCTGCAGCCAAGACTCTTCCAGGAGGCATCAAGGTCGATGGACCTCGTGAGTGTCTATT

a score=12268
s chr3           142567543 301 + 160039680 CAGGGCTGGGGACTTTGGTGCAGACCTATGTGAATGCCATCAACAGTGGGACTGTGCCTTGTCTGGAGAACGCAGTGACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATGCAGCC-TGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGATGAGCAGGAGTTCCAGAAGAAGCTGGTGGTAAAACAACTTAGCCT
s HiC_scaffold_1  96783087 302 + 233722169 CAGGTCTTGAGAGCCTGGTATTGACCTATGTTGATGCCATCAGCAATGGGGAGCATCCCTGCATGGAGAATGCAGTCCGGGCCTTGGCCAAGAGGGAGAACTCAGCTGCTGTGCAGAAGGCCTTGGACCACTATGACCAGCAGATGGGTCTGAAGGTGCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTTGTGAGAGGGAGGTCACTGAGATCTTCATCCAACATTCCTTCAAAGATGTTGGCCAGGTATTTCAAAAGGATTTTGCAGTAGGTCGTTTTTGTCT

a score=11085
s chr3           142567543 287 + 160039680 CAGGGCTGGGGACTTTGGTGCAGACCTATGTGAATGCCATCAACAGTGGGACTGTGCCTTGTCTGGAGAACGCAGTGACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATGCAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGA--------TGAGCAGGAGTTCCAGAAGAAGCTGGTGGTA
s HiC_scaffold_1  96775476 292 + 233722169 CAGGTCTAAAGAACCTGGTGATGACCTACATCAGTGCCATCAGCAGTGGGGAACTGCCCTGCATAGAGAATGCAGTCTGGGCCTTGGCCCAGATAGAGAACTCAGCCGCTGTGCAGAAGGCCTTGGCCTACTGTAACCAGCAGATGGACAAGAAGGTGCAGCTGCCCACAGACACCCTCCAAGAGCTGCTGGACCTGCACAGGGCCTGTGAGGGGGAGGCCATCAAGA---TCATGAAACATTCCTTCATAAAGGAATACATATTGACTAAGAATTTCAAGAGGGATTGCTGGTA

a score=8354
s chr3           142567544 287 + 160039680 AGGGCTGGGGACTTTGGTGCAGACCTATGTGAATGCCATCAACAGTGGGACTGTGCCTTGTCTGGAGAACGCAGTGACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATGCAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGATGAGCAGGAGTTC---CAGAAGAAGCTGGTGGTAA
s HiC_scaffold_1 128777339 271 + 233722169 AGGTCTAGAGAGCCTGGTGCTGAGCTGTGTCAGTGCCATCAGCAGTGGGGATCTGCCCTGCATACAGAACGCAGTCCTGGCCTTGGCC-AGAGAGCGACCTCAGCTGCAGTGCAG---GCCTTGGTCCACTATGACCAGAAGCCAGGCCAGAGGGTGCAGCTGCCAACAGACACCCTGCAGGAGTAGCTGGACCTACAAAGGGCCTGTGAGAGGGAAACCATCAAGATCTTCATCAGAAATCCCTT---------------GAAATTCCTTCAAAAGGATCTAGTGgtaa

a score=12497
s chr3           142567544 287 + 160039680 AGGGCTGGGGACTTTGGTGCAGACCTATGTGAATGCCATCAACAGTGGGACTGTGCCTTGTCTGGAGAACGCAGTGACAACCCTGGCCCAGCGTGAGAACTCCATAGCTGTGCAGAAGGCAGCTGACCACTACAGTGAGCAGATGGCCCAGCGAATGAGGCTCCCCACAGACACGCTCCAGGAGCTGCTGACTGTGCATGCAGCCTGTGAGAAGGAAGCCATTGCTGTCTTCATGGAGCACTCCTTCAAGGATGATGAGCAGGAGTTCCAGAAGAAGCTGGTGGTAA
s HiC_scaffold_1  96743313 287 + 233722169 AGGTCTACAGAGCCTGGCACAGACCTATGTCAATGCCATCAACAATGGGGATCTGCCCTGCATGGAGAATTCAGTCCTAGCATTGGTGCAGACAGAGAACTTAGCTGCAGTGCAGAAGGCCTTGGCCCACTATGACCAGCAGATGGGCCAGAAGGTTCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTGTGAGAGGGAGGCCTTGGAAATATTCACAAAGTACTCTTTCAAGgatgaggaccaaagcttccaGAAGGAATTACAGGTAA

a score=14847
s chr3           142598114 1010 + 160039680 TCTCTTGCAAACATAAGAGTACTCTCTGGAAATGGCCTCAGAAATCCACATGAAAGGCCCAGTGTGCCTCATCAAGAACTCCGGTGAGCAGTTGGAGGTCTACCAGGAAGCACTGGACATCCTGTCTGCTATCCAAAATCCTGTGGTGGTCGTAGCAATAGTGGGCTTCTACCACACAGGCAAATCCTATCTGATGAATAAGCTGGCTGGAAAGCAGAAGGGTGAGTTCTACCAGGAGAGCTCTGCTCAGTACCCCTTCCCACTTCCACTGTCAG---------TATCCAGAAAGCAAATGTGAGTAGA---AAAAAGTCAAAGATGCAGG-TGATATG------------GGGTGCTTT------TTGTCCATCAGTGGACTTGCATTTCTGAATTAGTGTTCCTAGGGCTTCCTCCCACAATGCCATTACG---------TCTTTTAAAGGTATAAGCATGTCTTAGTGG---------GCTTCAtaagttctcacctttcttatcctcatctctagccccccttctctccctcccttcccccttctcccca---tgtgaccatggccagcctctgtctttcttactaccttctctc-------ttttccagcc--------cttctacaataaagctctaaaactataTATAT-ATAATCTTAG--------------------------TGGAAGAAATAATACATTAATAGGGACAG---------TCAGCTTA----------TGTTATAATGAATTACACAATACTTGTTAGAATGTTCAC----TTAGGAGGAGTAAGAGTCCACTTATGTCTAA-GGTGGAAAT--GAATGGCTGATCAGC-ATTGGATGTTCTGCACTCCATGTTTCCTGGTTTGAAATCAAACCCAACACCTGGAACTGGCTGGTCTTCTGTAAATGGTAAACATGTTCATTCCAAGGCAATTTCAGGAAGCGTGTGCTGTTTA---TCTCCCATCTCATCCC-----TACTCTGTAGGCTTCTCCCTGGGCTCCACTGTGCAGTCTCACACAAAGGGCATCTGGATGTGGTGCATGCCTCATCCCGAGAAGCCAGAACATACCCTGGTTCTGCTTGACACTGAGGGCCTGAAAGACATGCAGAAGGT
s HiC_scaffold_1  96769999 1077 + 233722169 TTCCTTGCAGACA---GAGCACACACTGGTCATGGCCTCCCAGACCCACCTGCCAGCCCCAGTGTGCCTCATTGAGAATATGAAAGGGCAGCTGAAGGTGAATCAGGAAGCTCTGAGCATCCTGTCTGCCATCACCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGTCGGCTGGGAAGAAAAAGGGTGAGTGCCACCAGCAAGGCCCTGCTGAGC-CCTCTGCCCAC-CACACTGCCAGCGGCTGACATAGCAGTCAGACAGGGACGGGCAGAGCCAGGAAGTAGTAG-TGCAAGCTAATATGCCACTCTCAGGCGGATTTTTTAATCTGTTATCCATT-----TCATCCAGGCCAAAATTCAGCTCCCCAG-----CACCCCACATT--CATTATGCTCTAGATTCCTTTCAGAATCATAATCTTTTCTAGAAGGGTGAAGACAGTCATATGAGTAATTAATTCACAGAGTATTATGTTATGAACC-----------------------TGTTACTAAAGTGTTGCCATAGTAAGTGCAAGTTTTCATGGATATTTAACATTAAAGAAGCTTTGGAGCTgggttgtagttcagtggcaaagtgcttcCCTTGTATGTTTAATAACCTTagattcagtccctagtaccaccacaccaaaaaaaaaaaaaaaaggaaagaaagaaagaaaaaaaactcaatttgttttccatattgtttttattatttaaaatagacaTAATGTATAGTTTACTCTTTTAAACATTGTAAGCAtgtatttctatttcattgagGAAATTCACATTTTTGTGTAGCTATAATATCCATTCATCTCTAGAATACTTGATGTAATTTCAGTTCTCACTCCTAAGCTTGATTGTGCT-------------AACA--TTTATCTCAA------TTTTGTACATACTTGATATTAAAACTCACCCATCTCATCTCACCCGTGTTTTGCAGGCTTCTCTCTGGGCTCCACGGTGCAGGCCCACATCACAGGAATCTGGATGTGGTGTGTGCCTCATCCCAAGAAGCCAGATCAGACTCTAGTTCTGCTTGAAACCAAGGGCCTGGGAGATGTTGAGAAAGT

a score=12628
s chr3           142598129 290 + 160039680 AGAGTACTCTCTGGAAATGGCCTCAGAAATCCACATGAAAGGCCCAGTGTGCCTCATCAAGAACTCCGGTGAGCAGTTGGAGGTCTACCAGGAAGCACTGGACATCCTGTCTGCTATCCAAAATCCTGTGGTGGTCGTAGCAATAGTGGGCTTCTACCACACAGGCAAATCCTATCTGATGAATAAGCTGGCTGGAAAGCAGAAGGGTGAGTTCTACCAGGAGAGCTCTGCTCAGTACCCCTTCCCACTTCCACTGTCAGTATCCAGAAAGCAAATGTGAGTAGAAAAAA
s HiC_scaffold_1  96738024 285 + 233722169 AGAAAACACACTGAAAATGGCACCACACATCCACATGCCAGAGCCCTTGTGCTTCATTGAGAACACTGAGGAGAAGCTGGTGGTTAAACAAGAAGCTCTGAGCATCCTGTCTGCCATCAGCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGCAAGAATAAAGGTGAGTGCCATCGGCAAA-----GATGACTCCCTTCTATCCCCTACAATGTCACCATCCAGCATGGAGATTTGAGGAGAGAAAA

a score=9711
s chr3           142598981 169 + 160039680 CCCTACTCTGTAGGCTTCTCCCTGGGCTCCACTGTGCAGTCTCACACAAAGGGCATCTGGATGTGGTGCATGCCTCATCCCGAGAAGCCAGAACATACCCTGGTTCTGCTTGACACTGAGGGCCTGAAAGACATGCAGAAGGTACAACATAATCTTTCATATCTACTCA
s HiC_scaffold_1  96740162 169 + 233722169 CTCTCCTTTGCAGGCTTTTCTGTTGGCTCTACGGTGCAGTCCCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCATCCTGAGAAGCCAGACCACACCCTTGTCTTGCTTGACACTGAGGGTCTGGGAGACGTAGAGAAGGTAGAGGAGAAAGATTCTTATTTGACCA

a score=6119
s chr3           142600474 138 + 160039680 CTGACCTGTAGGGTGACAACCAGAATGACTGTTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTC
s HiC_scaffold_1  96741091 138 + 233722169 ctgaCTTCCAGGTTGATGATAAGAATGACGCCCAGATCTTCGCCCTGGCAATTCTGCTGAGCAGCACTTTTGTATACAACACCATGAACAAAATTGACCAGGGTGCTATCGACCTACTGCAGTATCCTTTTGTGGCTC

a score=8639
s chr3           142600474 145 + 160039680 CTGACCTGTAGGGTGACAACCAGAATGACTGTTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTCTCTAGCA
s HiC_scaffold_1 128768551 145 + 233722169 CTGGCCTGCAGAGTTACCCCCAGAATGACTCCTGGATCTTCACCCTGGCAATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAGCCATCAACCATAAGGCCCTGGACCAGATGCAGTATCCTTTTTATGGTCTAGAACA

a score=9442
s chr3           142600474 143 + 160039680 CTGACCTGTAGGGTGACAACCAGAATGACTGTTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTCTCTAG
s HiC_scaffold_1  96780865 141 + 233722169 CTGATTTCCAGGATGACAACCAGAACGACTCCTGGATCTTTGCCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTT--GTGTAGTCCAG

a score=8591
s chr3           142600483 129 + 160039680 AGGGTGACAACCAGAATGACTGTTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTC
s HiC_scaffold_1  96772245 129 + 233722169 AGAGTGACCCCTGGAATGACTCCTGGATCTTCACCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTCTTGTGGTC

a score=9574
s chr3           142603499 293 + 160039680 GGGATCCACATCATAAAAATGGAGTTTTCCCTGT--------AGTTTTCTTAACTTCACATGCCAGCTATGTGACAGAACTGACTGATCTCATCAAATCAAAGTCATCACCTGATCAGAGTGATGTAGACAACTCAGCTAACTTTGTGGGCTTTTTTCCTATCTTTGTGTGGACTCTGAGGGATTTCTCCCTGGATCTGGAATTTGATGGAGAATCCATCACTCCTGATGAGTACCTGGAGACTTCACTGGCTCTGAGAAAAGGTAAATGGGCTCAATGGAAGTTTGTGATAT--CATGGTAA
s HiC_scaffold_1  96772553 292 + 233722169 GGGATTCATATAGTGAAG--GGAGGTCTTGTTATTTTTGCCAGGTTTTCTTAGCCTC-----TCAGCTGTGTCACAGAGCTGACAGATCTGATCAGAGCAAAATCCTCACCTGACACAGATAAGACTGAAGACTCAGCTGACTTTGTGAACTTCTTCCCAGATTTTGTGAGGACTCTGAGAGATTTCTGCCTGGAACTGACACTAGATGGACAGAGCATCTCTGCAGACAGCTACCTAGAGTATTCCTTGAAGCTGAAGCAAGGTGGTAGGG----ATATAAATTGGTGAAAGGACATAGTAA

a score=13705
s chr3           142603523  811 + 160039680 TTTTCCCTGTAGTTTTCTTAACTTCACATGCCAGCTATGTGACAGAACTGACTGATCTCATCAAATCAAAGTCATCACCTGATCAGAGTGATGTAGACAACTCAGCTAACTTTGTGGGCTTTTTTCCTATCTTTGTGTGGACTCTGAGGGATTTCTCCCTGGATCTGGAATTTGATGGAGAATCCATCACTCCTGATGAGTACCTGGAGACTTCACTGGCTCTGAGAAAAGGTAAATGGGCTCAA----TGGAAGTTTGTGATATCATGGTAACAATAGCA-----------------------------------------TAAGG------ATCGCTTCTG------TATTCCTGGTAA--AATTCTTAAT-CCTGTA----------------------------------------------------------------------------------------TTTGTGCTTCCC---------TCAGTGT------------TGTTATGGGAAATGAAAACACAGCTTGACTGAA------------------------------TTTGAACTGTACCATCCACAG-----------CTTCTCAGAGGGCTTGTTCTTTCTTGTCATCT-TGTTTT---------GTTTTGCTCGTTCTAGATTAGTTATTTACCCCTTGCTT-------TGGGAAAGTTATATT-------------------------------------------ACTGAAAGTGTCATATATTTGA------AAGAATTTATTTGAAGTTTACTGCA----------TCTAATTTATCTTTCCTTA-AGGAACTGATGAGAACACTAAAAAATTTAATATGCCTCGCCTGTGTATCAGGAAGTTCTTCCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGGAGACAGGAAGCAACTTTCCAAACTAGAGTGGATACAGGAGGACCAGCTGAATAAAGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTCAGCTATTCTGGTGTCAAGACTCTATCTGGAGGCATCACAGTCAATGGGCCACGTAAGT---CATCCCTCTA
s HiC_scaffold_1  96781206 1079 + 233722169 TTTTGCCAGT--TTTCCTTAGCTCT------CAGCTATGTGACTGAACTGACAGACCGAATCCGAGCAAAATCCTCACCCAACACGAGTGAAGTTCAAGATTCAGCTGACTTCATGAGCTTCTTCCCAGACTTTGTGTGGACACTGAGAGATTTCTCCCTAGAATTAGAAATAGATGGAGATTCCATTTCTCCAGATGCTTACCTGGAGAATTCTCTGAAGCTAAAAAAAGGTAATATGGATAAATAACTGGTAAATGGAAATATCAAG---ACATTAGAAATTATCAATGTGTACTTTTCTAATTATACTCTTTTTACATTTAGAGTTTTCTATTACTTCTACCTACCTACACCTGGAAATTAATGCTTAATACCTGTGTTAAGTGattcaactttaaaatattttcatccttGTTCAGAGACAAGTTTCTGTCTTTCATGTTTACTATGCTTAGTTTACATTTATCTTGGTGCTTACCATTTGTGATTCTGTGTTTATCCAAAGAATGTGGTGTACAGTGAAtgtata-tttgaagaaaatagatCAAAGTAGTATAGTAGCACAAGTCTTTGGAAAGTATGTTCCACAGACAAATGCTAACTAATTAGAGACTgcctcttttcttgaaatatatgTTATTAGAAAAACATTGAGCCCATTC----------ATTTATACATTGTCTACAGATGCTGGGATGTTATAGTCAGTGAGTTGAGTGCAGAGGAAAGAGATTATCTGGCCTGAAAAGCTGACAATATACACTATTTGGTCCTTtacaaaaatgtttgcaaattctTGCAGCAGGTAAacccttttttttatcttcttacaGGTACTGGTgagaatgttaaaaattataatctCCCCGGACTCTATATCTGCAAGTTCTTCCCAAAGAAGAAATGCTTTATCTTCGATAGATCCACTCATCCAAAGTAGCTGGCCCAGCTCGAGACCCTGCACGATGATGAGCTGGATTCTGAATTCGTGGGGCAAGTTGCAGAATTCTGTTCTTACATCTTCAGCTCTGCCAGGACTAAAGCTCTTCCGGGAGGCATCCGTGTCAATGGACCTCGTGAGTACCCTTCCCACTA

a score=17911
s chr3           142603524 800 + 160039680 TTTCCCTGTAGTTTTCTTAACTTCACATGCCAGCTATGTGACAGAACTGACTGATCTCATCAAATCAAAGTCATCACCTG------ATCAGAGTGATGTAGACAACTCAGCTAACTTTGTGGGCTTTTTTCCTATCTTTGTGTGGACTCTGAGGGATTTCTCCCTGGATCTGGAATTTGATGGAGAATCCATCACTCCTGATGAGTACCTGGAGACTTCACTGGCTCTGAGAAAAGGTAAATGGGCTCAATGGAAGTTTGTGATATCATGGTAACAATAGCAT-------AAGGATCGCTTCTGTATTCCTGGTAAAATTCTTAATCCTGTATTTGTGC----TTCCCTCAGTG-TTGTTATGGGAAATGAA--------------AACACAGCTT---------GACTGAAT-TTGAACTGTACCATCCACAGCTTCTCAGAGGGCTTGTTCTTTCTTGTCATCTTGTTTTGTTTTGCTCGTTCTAGATTAGTTATTTACCCCTTGCTTTGG-----GAAAGTTATATTACTGAAAGTGTCATATATTTGAAAGAAT-TTATTTGAAGTT---------------------TACTGCATCTAATTTATCTTTC---CTTAAGGAACTGATGAGAACACTAAAAAATTTAATATGCCTCGCCTGTGTATCAGGAAGTTCTTCCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGGAGACAGGAAGCAACTTTCCAAACTAGAGTGGATACAGGAGGACCAGCTGAATAAAGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTCAGCTATTCTGGTGTCAAGACTCTATCTGGAGGCATCACAGTCAATGGGCCACGTAAGT
s HiC_scaffold_1  96741442 834 + 233722169 TTTTTGTGAACTTTCCTTAATT--GCATCTCAGCAATGTGACAGAACTCACAGATCTGCTCAGAGCAAGAAACTCACCTGTtattaatgagaatgaagataaTAA------TGACTTAATGAGCTTCTTTCCAGACTTGGTATGGACTTTAAGAGATTTCTACCTAAGCCTAGAAGCAGGTGGAAAAGTCATCACACCAGATCAATACCTGGAGAACTCATTGAAACTCAAAGAAGGTAAGGAGGTTTG------gttttggaaa--aaggaaaaagaagcagcCCAATAAAGTATCCTTTTTGTGTGT------AGGTcactaaatgtatattttttcacatttaccTTACTAACTGTCACACAGAATAAATGATGCATATTATTAACTTAGAGTAAATTTAGAGATTCAATATTGAAATGTATCACTCTCCTGTTCTTGGAAcaa-----atttctt----tcctgtttcaatttcctgattata------tttttaagcttttgCTTAGGCTTTATAAAGAAATGTTAAACTAAGGAACAT-TAGCAAAAAGAATGTTACTTTGAGGTACATGATAAGCAAAAACACTATACTAagtaaattctatttttctttcttcaggtaGCAATGAGAGAATTCAGCATTTCAATTTGCCCCGTCTGTGTATAAGGAAGTTCTTTCCAAGAAAGAAATGCTTTATCTTTGAGTCACCGGCTCACAAAAAGCAGCTTTCCCAGCTTGAAATGCTGCATGATGATGAGCTATATCCTGAGTTTGTGCAACAAGTGGCAGAATTCTGTTCCTACATCTTCAACCACTCTGCAGCCAAGACTCTTCCAGGAGGCATCAAGGTCGATGGACCTCGTGAGT

a score=7490
s chr3           142603535 260 + 160039680 TTTTCTTAACTTCACATGCCAGCTATGTGACAGAACTGACTGATCTCATCAAATCAAAGTCATCACCTGATCAGAGTGATGTAGACAACTCAGCTAACTTTGTGGGCTTTTTTCCTATCTTTGTGTGGACTCTGAGGGATTTCTCCCTGGATCTGGAATTTGATGGAGAATCCATCACTCCTGATGAGTACCTGGAGACTTCACTGGCTCTGAGAAAAGGTAAATGGGCTCAATGGAAGTTTGTGATATCATGGTAACAA
s HiC_scaffold_1 128768908 251 + 233722169 TTTCCTTAGCTCC-----TCAGCTATTTCAGAGAGCTGAAAGGCCTGATCAGAGCAAAATCCTCACCTGACACCAATGAGACTGAAGATTCAGTTGGCTTAATGAGCTTCTTCCCAGACTTTGTGTGGGCGCTGAGAGATTTCTCCCATGACTTGGAGCTAGAGGGACAGAGCATCTTTGCTGAAACCCACTTGGAGAATGCCCTAAAGCTAAAGCAAGGTAGCAGAGATGTAT---AATTGGTGAAATGA-GGTAGCAA

a score=9776
s chr3           142604053 297 + 160039680 ATCTAATTTATCTTTCCTTAAGGAACTGATGAGAACACTAAAAAATTTAATATGCCTCGCCTGTGTATCAGGAAGTTCTTCCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTG---GAGACAGGAAGCAACTTTCCAAACTAGAGTGGATACAGGAGGACCAGCTGAATAAAGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTCAGCTATTCTGGTGTCAAGACTCTATCTGGAGGCATCACAGTCAATGGGCCACGTAAGTCATCCCTCTACCTCTTATCTCGTCTT
s HiC_scaffold_1  96774426 290 + 233722169 accttttttat-tttcctgtaagcatcaatcagaa-agaaaaaaatataatctgCCCTGACTCTGTATCCAGAAGTTCTTCCCAGAGAAGAAATGTTTTGCCTTCATTAAGCCTGCTTGGGAAAAGATGAG------CAAGCTACAGACACTGCACAATGATGAGCTGGACTCTGAATTTGTGCAACAAGTTACAGAATTCTGTTCTTACCTCTTCAGCTCTTCCAAGACCAAAACTCTTCCAGGAAACATCAAGGTCAATGGGCCTTGTAAGTA--CCTTTCgcctattttctcatttt

a score=10067
s chr3           142604059 295 + 160039680 TTTATCTTTCCTTAAGGAACTGATGAGAACACTAAAAAATTTAATATGCCTCGCCTGTGTATCAGGAAGTTCTTCCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGGAGACAGGAAGCAACTTTCCAAACTAGAGTGGATACAGGAGGACCAGCTGAATAAAGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTCAGCTATTCTGGTGTCAAGACTCTATCTGGAGGCATCACAGTCAATGGGCCACGTAAGTCATCCCTCTACCTCTTATCTCGTCTTCGGC
s HiC_scaffold_1 128770850 289 + 233722169 TTTATCTT-CCTGCAGGCACCAGTGAGGGAGAGAAAAATGCTGATCTGTCCCTACTCTGTATCCAGAAGTTCTTCCTGCAAAAGAAATGCTTTGTCTTCAATAGGCCTGGTGATGAAAAGATGCTGCACAAGCTGGAGACATTGCACGATGATGAGATGGACCT-GAATTTAGGCAACAAGTTACAGAATTCTCTTCTTACATCTTCAGCTCTTCCAGGACCAAAATTCTCCCAGGAAACATCAAGGTCAACAGACCTCATAAGT----ACCCTGCctcttattttctctctgac

a score=17987
s chr3           142606697 312 + 160039680 ATAATCATTTTGAAACTCCTTTATATAGGTCTAAAAAGCCTGGTGCAGACCTATGTCAGTGCCATCTGCAGTGGAGAACTACCCTGTATGGAGAACGCAGTCCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCTACTACGAAGAACAGATGAATCAGAAGATCCACATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGACCTGTGAGAGGGAGGCCATTGAGGTCTTCATGAAGAATTCTTTCAAGGATGTAGACCAGAAGTTCCAGGAAGAATTAGGGGTA
s HiC_scaffold_1  96743290 309 + 233722169 aTAAGCATCTTTTATTTC---TATGAAGGTCTACAGAGCCTGGCACAGACCTATGTCAATGCCATCAACAATGGGGATCTGCCCTGCATGGAGAATTCAGTCCTAGCATTGGTGCAGACAGAGAACTTAGCTGCAGTGCAGAAGGCCTTGGCCCACTATGACCAGCAGATGGGCCAGAAGGTTCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTGTGAGAGGGAGGCCTTGGAAATATTCACAAAGTACTCTTTCAAGgatgaggaccaaagcttccaGAAGGAATTACAGGTA

a score=12912
s chr3           142606715 257 + 160039680 CTTTATATAGGTCTAAAAAGCCTGGTGCAGACCTATGTCAGTGCCATCTGCAGTGGAGAACTACCCTGTATGGAGAACGCAGTCCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCTACTACGAAGAACAGATGAATCAGAAGATCCACATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGACCTGTGAGAGGGAGGCCATTGAGGTCTTCATGAAGAATTCTTTCAA
s HiC_scaffold_1 128777331 253 + 233722169 CTATGTGTAGGTCTAGAGAGCCTGGTGCTGAGCTGTGTCAGTGCCATCAGCAGTGGGGATCTGCCCTGCATACAGAACGCAGTCCTGGCCTTGG-CCAGAGAGCGACCTCAGCTGCAGTGC---AGGCCTTGGTCCACTATGACCAGAAGCCAGGCCAGAGGGTGCAGCTGCCAACAGACACCCTGCAGGAGTAGCTGGACCTACAAAGGGCCTGTGAGAGGGAAACCATCAAGATCTTCATCAGAAATCCCTTGAA

a score=16200
s chr3           142606715 297 + 160039680 CTTTATATAGGTCTAAAAAGCCTGGTGCAGACCTATGTCAGTGCCATCTGCAGTGGAGAACTACCCTGTATGGAGAACGCAGTCCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCTACTACGAAGAACAGATGAATCAGAAGATCCACATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGACC-TGTGAGAGGGAGGCCATTGAGGTCTTCATGAAGAATTCTTTCAAGGATGTAGACCAGAAGTTCCAGGAAGAATTAGGGGTAGGT
s HiC_scaffold_1  96783080 298 + 233722169 CTATGTGCAGGTCTTGAGAGCCTGGTATTGACCTATGTTGATGCCATCAGCAATGGGGAGCATCCCTGCATGGAGAATGCAGTCCGGGCCTTGGCCAAGAGGGAGAACTCAGCTGCTGTGCAGAAGGCCTTGGACCACTATGACCAGCAGATGGGTCTGAAGGTGCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTTGTGAGAGGGAGGTCACTGAGATCTTCATCCAACATTCCTTCAAAGATGTTGGCCAGGTATTTCAAAAGGATTTTGCAGTAGGT

a score=16490
s chr3           142606718 348 + 160039680 TATATAGGTCTAAAAAGCCTGGTGCAGACCTATGTCAGTGCCATCTGCAGTGGAGAACTACCCTGTATGGAGAACGCAGTCCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCTACTACGAAGAACAGATGAATCAGAAGATCCACATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGACCTGTGAGAGGGAGGCCATTGAGGTCTTCATGAAGAATTCTTTC---AAGG-----ATGTAGACCAGAAGTTCCAGGAAGAATTAGGGGTAGGTGTGGCACTCAACATCTTGAGAGTCAAGAATATATTTGTCTTTTTGAGAAGAGAA
s HiC_scaffold_1  96775472 340 + 233722169 TATGCAGGTCTAAAGAACCTGGTGATGACCTACATCAGTGCCATCAGCAGTGGGGAACTGCCCTGCATAGAGAATGCAGTCTGGGCCTTGGCCCAGATAGAGAACTCAGCCGCTGTGCAGAAGGCCTTGGCCTACTGTAACCAGCAGATGGACAAGAAGGTGCAGCTGCCCACAGACACCCTCCAAGAGCTGCTGGACCTGCACAGGGCCTGTGAGGGGGAGGCCATCAAGA---TCATGAAACATTCCTTCATAAAGGAATACATATTGACTAAGAATTTCAAGAGGGATTGCTGGTATGT-----AATTTTTATCTCAAG--------ATATATTGATTTGGGTGAGAGAAGGA

a score=7469
s chr3           142608093 232 + 160039680 TCCTGTGCCCTACCAGGCCCAGCTGGAAGCCAAACGAGATGCCTTTGTTAAGAAGAACATGGACATGTCATCTGCTCATTGCTCAGACTTACTGGAGGGCCTCTTTGCTCATCTGGAAGAAGAAGTGAAGCAGGGGACATTTTATAAACCAGGAGGCTACTACCTTTTTCTTCAAAGGAAACAAGAGCTGGAGAAAAAGTATATCCAGACTCCTGGAAAGGGACTCCAGGTA
s HiC_scaffold_1  96744336 232 + 233722169 TTTTGTCCCTTTGAAGACACTTCTAGATGCAAAGCTGGAAGACATTTGTGAGCGGAACAAGGCAGCCTCTTCAGAACACTGCTCAACTTTACTTCAGATTATTTTTGGTCCGCTGGAAGAAGAAGTGAGGCAGGGGATTTATTTTAAACCAGGAGGCCATAATCTCTTCCTTCAAAAAATGGAAGAGTTGAAGGCAAATTACTATCAACAGCCAAGGAAAGGACTACAGGTA

a score=7411
s chr3           142608107 221 + 160039680 AGGCCCAGCTGGAAGCCAAACGAGATGCCTTTGTTAAGAAGAACATGGACATGTCATCTGCTCATTGCTCAGACTTACTGGAGGGCCTCTTTGCTCATCTGGAAGAAGAAGTGAAGCAGGGGACATTTTATAAACCAGGAGGCTACTACCTTTTTCTTCAAAGGAAACAAGAGCTGGAGAAAAAGTATATCCAGACTCCTGGAAAGGGACTCCAGGTAAAC
s HiC_scaffold_1  96789332 220 + 233722169 AGGCTCAGCTGcaaaa-aaatgatataatttttgtGAACTGAATATGAAAGCATCTTCAGATCGTTGTTCAGCTTTGCTTCAGGATCTTTTCAGTCCCTTAGAAGAAGAGGTGAAACAAGGAATTTACTCTAACCTGGGAGGCTACCATTTTCTTATTCAGAAGGTACAAGACCTGAAGAAAAAGTACTATGAGGAACCCAAGCAGGGGATACAGGTAAGC

a score=7826
s chr3           142608107 221 + 160039680 AGGCCCAGCTGGAAGCCAAACGAGATGCCTTTGTTAAGAAGAACATGGACATGTCATCTGCTCATTGCTCAGACTTACTGGAGGGCCTCTTTGCTCATCTGGAAGAAGAAGTGAAGCAGGGGACATTTTATAAACCAGGAGGCTACTACCTTTTTCTTCAAAGGAAACAAGAGCTGGAGAAAAAGTATATCCAGACTCCTGGAAAGGGACTCCAGGTAAAC
s HiC_scaffold_1  96776354 221 + 233722169 agACTCAGCTAGACAAAAAGTGATATAACTTTTGTGAGCAGAATATGAAAGCATCTTCAGATTGCTGTTCAGCTTTACTTCGGGATCTCTTCAGTCCCCTAGAAGAAGAGGTGAAACAAGGAATTTATTCTAAAGCAGGGGGCTACCATCTCCTTATTCAGAAGGTATAAGGCCTGAAGAAAAAGTCCTATGAGGAACCCAAGAAGGGGGTACAGGTAAGC

a score=12256
s chr3           142610946 614 + 160039680 TCTAGGCTGAAGTGATGCTGAGAAAATACTTTGAATCCAAGGAGGATTTGGCTGATACACTTCTAAAGATGGACCAGTCACTCACAGAAAAGGAAAAGCAGATTGAAAGTGAGAGCTACTGAGAATATTCCCAATGTTGGGAATTCTTGGCATATGCTGCAATACTAATCCATATCACCTCATCATTGTGGAGAAAAAGATTACAAATGTCACT--CTTAGCTTCATGGTGGCTGTTTTTAAACT-----------AGTAGACATGGCATTCATTGTGCCTCCTTGTTATCCAGTTTTCAGGGTAAAGATTCCACAAAGTGGTTAAaaaaaaacaaaaaacaaacatacaaacaaacaaaACGAAAGCCTCTCCCAAAATGTACTCTTCATCTCCTTTGCTTCTCTCTTTTCTCAGTGGAACGTATAAAAGCAGAAGCCGCAGAAGCAGCAAATAGAGCATTGGCAGAAATGCAAAAGAAGCATGAGATGCTGATGGAACAGAAGGAACAGAGTTATCAAGAGCACATGAAACAGCTGACTGAGAAGATGGAGCAGGAACGGAAAGAGTTAATGGCAGAGCAACAAAGAATCATATCCCTTAAACTTCAGGTACCTGGCTGCACCAT
s HiC_scaffold_1  96790114 527 + 233722169 TCAAGGCTGAAGAGATTCTGCAGAAATACTTGAAATCCAAGAAAGATATGACAATGACA-TTCTACAGACAGACCAGACtctcacagagaaggaaaagaagatggAAGGTGAG-------GAGGAGATTA---------------------AGACGCTACA-------------TGACCTCA-----------AAAGATCTTAAAAGTCTGAGTAACTTAAC--CAAAACTGGTACTTTTAAACTGAAACAAGAAGAGCAGAGCTGG-ATCTTTTGTTCCA-------ATGCAGTCAGCAG-----------------------------CAACAATAAGTAGACATATGAAGGGGAAGGAGGTGAGAC-----CACATAGTAACC--CATGGCCATTTCTCTTATTCCTTCT-AGTGGACTGTGTGAAAGCTGAATCTACCAAGGTGGCTGGAAAAATGTGGgaggaaatgcaaaagaaatatcAGGAGATGttggagcagaaagagaagagCTATCAGGAGCACATCAAACAGTTGACTGAAAAGGTGGCAGAGGAGAAGGATCAGTTTTTGAAAGAGCAACAGGAGGTTCTAGCTTTTAAATTCCAGGTATTCGGCTGTGCCAT

a score=16626
s chr3           142623633 332 + 160039680 GACTAGAAATTGCAG------TCCAATTTATCT-TCTTCTTAGAGACAAAAAGAAACCACCCTGGACATGGCCTCAGAGATCCACATGTCGGAACCCATGTGCCTCATTGAGAACACTGAGGCTCAACTAGTGATCAACCAGGAGGCTCTGAGGATCCTGTCTGCCATTACACAGCCTGTGGTGGTGGTGGCAATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTAGCTGGGAAGAGGACAGGTGAGTGCCACCAACAAATCTGTGCTTGGTTCCTTCTGTTCACT--CATGTCACCAGCATCCTGAAAGCAGATGTGAGGAAAGA
s HiC_scaffold_1  96737976 330 + 233722169 GACTAGAAACCGTGAATCTGATTCAATCTACCTCTATTCTTATAGA---GCAGAAAACACACTGAAAATGGCACCACACATCCACATGCCAGAGCCCTTGTGCTTCATTGAGAACACTGAGGAGAAGCTGGTGGTTAAACAAGAAGCTCTGAGCATCCTGTCTGCCATCAGCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGCAAGAATAAAGGTGAGTGCCATCGGCAAA-----GATGACTCCCTTCTATCCCCTACAATGTCAC---CATCCAGCATGGAGATTTGAGGAGAGA

a score=19129
s chr3           142623653 1056 + 160039680 TTTATCTTCTTCTTAGAGACAAAAAGAAACCACCCTGGACATGGCCTCAGAGATCCACATGTCGGAACCCATGTGCCTCATTGAGAACACTGAGGCTCAACTAGTGATCAACCAGGAGGCTCTGAGGATCCTGTCTGCCATTACACAGCCTGTGGTGGTGGTGGCAATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGCTAGCTGGGAAGAGGACAGGTGAGTGCCACCAACAAATCTGTGCTTGGTTCCTTCTGTTCACTCATGTCACCAGCATCCTGAAAGCAGATGTGAGG-AAAGAGTGTCAGAGAGAGGAGG-ACTAGGGAAGGATACTGC-CTACCACCAGTGGAACTTCTTGCTGTTGAGTCATCCTTACCCACTGGGTCTTTAAACAGTACCTTTGCTTTCCAACTGAAAGGTATAGTAGGTGCAGTTTAGAGAAAGAACTAATACATTGAGAAAGTTAACTTCttttattttatt--ttattttattttattttattttattttattttattttattttatagactaggtttctctatagtc----ctggctgtcctggaactt--gctctataga-----tcaggctggcctcgaactcagag---atctgcctgcctctgcctcccaaatg--ctgggattaaaggtgtgg-gtcaccaccacctggctAACTTCCTTAGGAATGAATTATGAAACA-------------TTTTCTAGACTG----------TCAACATAGGAGGAACAAGTATCTAGCTC---TAAGAAATGAATATATTGATCAACATTAGATATTTCAAATCCCCTATTTCTA---GGCTAGGAGTTCAATC---------AATACTTGAAGTCATTT------TCTCTTTCAAATGTAACTATGTTATTTTTTCAACTCAATATCAGGAAGCACCTT-CATTGACTGCCCTGCCCGTCCCATGCTCATTC-TGCTTTTCAGGCTTTTCCCTGGGCTCCACTGTGCAGTCTCACACCAAGGGCATCTGGATGTGGTGTGTGCCTCACCCCAAGAAGGCAGGGCAAACCCTGGTTCTGCTTGACACTGAGGGCCTTGAAGATGTTGAGAAGGTAAAAA
s HiC_scaffold_1  96769990 1091 + 233722169 TCCATCCCTTTCCTTG---CAGACAGAGCACACACTGGTCATGGCCTCCCAGACCCACCTGCCAGCCCCAGTGTGCCTCATTGAGAATATGAAAGGGCAGCTGAAGGTGAATCAGGAAGCTCTGAGCATCCTGTCTGCCATCACCCAGCCCGTCGTGGTGGTGGCTATCGTGGGCCTCTACCGCACAGGCAAATCCTACCTGATGAACAAGTCGGCTGGGAAGAAAAAGGGTGAGTGCCACCAGCAAGGCCCTGCTGAG--CCCTCTGCCCAC-CACACTGCCAGCGGCT--GACATAGCAGTCAGACAGGGACGGGCAGAGCCAGGAAGTAGTAGTGCAAGCTAATATGCCACTCTCAGGCGGATTTTTTAATCT---GTTATCCATTTCATCCAGGCCAAAATTCAGCTCCCCAGCACCCCACATTCATTATGCTCTAGATTCCTTTCAGAATCATAATCTTT---TCTAGAAGGGTGAAGACAGTCATATGAGTAATTAATTCACAGAGTATTATGTTA------------TGAACCTGTTACTAAAGTGTTGCCATAGTAAGTGCAAGTTTTCATGGATATTTAACATTAAAGAAGCTTTGGAGCTgggttgtagttcagtggcaaagtgcttcCCT-TGTATGTTTAATAACCTTagattcagtccctagtaccaccacaccaaaaaaaaaaaaaaaaggaaagaaagaaagaaaaaaaactcaatttgttttccatattgtttttattatttaaaatagacaTAATGTATAGTTTACTCTTTTAAACATTGTAAGCAtgtatttctatttcattgagGAAATTCAC-ATTTTTGTGTAGCTATAATATCCATTCATCTCTAGAATACTTGATGTAATTTCAGTTCTCACTCCTAAGCTTGATTGTGCTAACATTT-ATCTCAAT-TTTGTACATACTTGATATTAA--AACTCACCCATCTCAT-CTCACCCGTGTTTTGCAGGCTTCTCTCTGGGCTCCACGGTGCAGGCCCACATCACAGGAATCTGGATGTGGTGTGTGCCTCATCCCAAGAAGCCAGATCAGACTCTAGTTCTGCTTGAAACCAAGGGCCTGGGAGATGTTGAGAAAGTCAGGA

a score=10060
s chr3           142624560 157 + 160039680 ATTCTGCTTTTCAGGCTTTTCCCTGGGCTCCACTGTGCAGTCTCACACCAAGGGCATCTGGATGTGGTGTGTGCCTCACCCCAAGAAGGCAGGGCAAACCCTGGTTCTGCTTGACACTGAGGGCCTTGAAGATGTTGAGAAGGTAAAAAATAAAAAT
s HiC_scaffold_1  96740161 157 + 233722169 ACTCTCCTTTGCAGGCTTTTCTGTTGGCTCTACGGTGCAGTCCCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCATCCTGAGAAGCCAGACCACACCCTTGTCTTGCTTGACACTGAGGGTCTGGGAGACGTAGAGAAGGTAGAGGAGAAAGAT

a score=6250
s chr3           142625501 138 + 160039680 CTGACCTGTAGGGTGACAACCAGAATGACTGCTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTC
s HiC_scaffold_1  96741091 138 + 233722169 ctgaCTTCCAGGTTGATGATAAGAATGACGCCCAGATCTTCGCCCTGGCAATTCTGCTGAGCAGCACTTTTGTATACAACACCATGAACAAAATTGACCAGGGTGCTATCGACCTACTGCAGTATCCTTTTGTGGCTC

a score=8770
s chr3           142625501 145 + 160039680 CTGACCTGTAGGGTGACAACCAGAATGACTGCTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTCTCTAGCA
s HiC_scaffold_1 128768551 145 + 233722169 CTGGCCTGCAGAGTTACCCCCAGAATGACTCCTGGATCTTCACCCTGGCAATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAGCCATCAACCATAAGGCCCTGGACCAGATGCAGTATCCTTTTTATGGTCTAGAACA

a score=9573
s chr3           142625501 143 + 160039680 CTGACCTGTAGGGTGACAACCAGAATGACTGCTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTCTCTAG
s HiC_scaffold_1  96780865 141 + 233722169 CTGATTTCCAGGATGACAACCAGAACGACTCCTGGATCTTTGCCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTT--GTGTAGTCCAG

a score=8820
s chr3           142625510 177 + 160039680 AGGGTGACAACCAGAATGACTGCTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGCACCTTCATCTACAACAGCATAGGAACCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTTGGTGTTCTCTAGCATAGTCCTAAACCTAGAAACAACAGCATCATTATTACATCAG
s HiC_scaffold_1  96772245 175 + 233722169 AGAGTGACCCCTGGAATGACTCCTGGATCTTCACCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTCTTGTGG--TCCAGAACACCAGTAAAAGTAGATAAGAAACCTTTTTTAGTAAACCAG

a score=17481
s chr3           142629920 844 + 160039680 ATAAAAT---GATAAACATGTTTTTCTAGTTTTCTTAACTTC--------GAATGCCAGCTATGTGACGGAGCTAACTGATCTTATCAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGATTCCGCTAACTTTGTGGGCTTCTTTCCAACCTTTGTGTGGACTCTGAGAGATTTCTCCCTCGAGCTGGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTCCCTGACCCTGAAAAAAGGTACCTGGACTTGGTGAAATGTTCTGAAATGGCGGAAAA----CAATTTCATAAA-TGTCATCTCTGC---CCGGTTGGCAAAGGTCTTGAGTTTGTAGCAGTGTTATCCTAACTGTTGTTATAGGAAATGAA-AACACAGCTTAGCAGAATCACTTGGACTCCTTTTGAAATTTCA----CAAGCTACATC---------TTCTTAGAGAAAGGGTGTTTTCTTTCCCATTACTTTACGTTTTTGTATTGCTCGTTCTTCATTAGCTTTTTTACGGCTTACCTAGGCTTTGCGAAA----GTTAC--------------GCAAGTAGAA---------GAGTCATATAT--AGCAATAATTC-ATTGGAAGTTTATTGCATCTAATTCTAAATTCTGGCAGGAGCTGATAAGAAAACTAAAAGCTTTAATGAGCCGCGACTGTGCATCAGGAAATTCTTTCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGAGGAGGAGCTGTGTGGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTGTGTGGTGGCATCATAGTCAATGGGCCACGTAAGT
s HiC_scaffold_1  96741414 862 + 233722169 ATAAAATATAGATTTAGGTGTTGTTCTATTTTTGTGAACTTTCCTTAATTGCATCTCAGCAATGTGACAGAACTCACAGATCTGCTCAGAGCAAGAAACTCACCTGTtattaatgagaatgaagataaTAATGACTTAATGAGCTTCTTTCCAGACTTGGTATGGACTTTAAGAGATTTCTACCTAAGCCTAGAAGCAGGTGGAAAAGTCATCACACCAGATCAATACCTGGAGAACTCATTGAAACTCAAAGAAGGTAAGGAGGTTTGgt-------tttggaaaaaggaaaaagaagcagcCCAATAAAGTATCCTTTTTGTGTGTAGGTcactaaatgtat--attttttcacatt--taccTTACTAACTGTCACACAGAATAAATGATGCATATTATTA-----ACTTAGAGTAAATTTAGAGATTCAATATTGAAATGTATCACTCTCCTGTTCTTGGAAcaaa-----tttctttcctgtttcaat------------------ttcctgattatatttttaagcttttgCTTAGGCTTTATAAAGAAATGTTAAACTAAGGAACATTAGCAAAAAGAATGTTACTTTGAGGTACATGATAAGCAAAAACACTATACTAagtaaattctattt--ttctttcttcaggtaGCA----ATGAGAGAATTCAGCATTTCAATTTGCCCCGTCTGTGTATAAGGAAGTTCTTTCCAAGAAAGAAATGCTTTATCTTTGAGTCACCGGCTCACAAAAAGCAGCTTTCCCAGCTTGAAATGCTGCATGATGATGAGCTATATCCTGAGTTTGTGCAACAAGTGGCAGAATTCTGTTCCTACATCTTCAACCACTCTGCAGCCAAGACTCTTCCAGGAGGCATCAAGGTCGATGGACCTCGTGAGT

a score=9782
s chr3           142629934 250 + 160039680 ATGTTTTTCTAGTTTTCTTAACTTCGAATGCCAGCTATGTGACGGAGCTAACTGATCTTATCAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGATTCCGCTAACTTTGTGGGCTTCTTTCCAACCTTTGTGTGGACTCTGAGAGATTTCTCCCTCGAGCTGGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTCCCTGACCCTGAAAAAAGGTACCTGG------ACTTGGTGAAA
s HiC_scaffold_1  96772583 251 + 233722169 ATTTTTGCCAGGTTTTCTTAGCCTC-----TCAGCTGTGTCACAGAGCTGACAGATCTGATCAGAGCAAAATCCTCACCTGACACAGATAAGACTGAAGACTCAGCTGACTTTGTGAACTTCTTCCCAGATTTTGTGAGGACTCTGAGAGATTTCTGCCTGGAACTGACACTAGATGGACAGAGCATCTCTGCAGACAGCTACCTAGAGTATTCCTTGAAGCTGAAGCAAGGTGGTAGGGATATAAATTGGTGAAA

a score=12712
s chr3           142629937  840 + 160039680 TTTTTCTAGTTTTCTTAACTTCGAATGCCAGCTATGTGACGGAGCTAACTGATCTTATCAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGATTCCGCTAACTTTGTGGGCTTCTTTCCAACCTTTGTGTGGACTCTGAGAGATTTCTCCCTCGAGCTGGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTCCCTGACCCTGAAAAAAGG--------------------------------------------------------------------------------------------------------------TACCTGGACTTGG--------------------------------------TGAAATGTTCTGA--AATGGCGGAAAACAATTTCATAAATGTCAT-----CTCTGCCCGGTTGGCAAAGGTCTTGA--------GTTTGTAG--CAGTGTTATCCTAACTGTTGTTATAGGAAATGAAAACACAGCTTAGCAGAATCACTTGGACT----------------CCTTTTGAAA-----TTTCACAAGCTA----CATCTTCTTAGAGAAAGGGTGTTTTCTTTCCCATTACTTTACGTTTTT------GTATT--GCTCGTTCTTCATTAGCTTTTTTACGGCTTACCTAGGCTTTGCGAAAGTTA----------CGCAAGTAGAAGAG----------------------TCATATATA--------------GCAATAATTCATTGGAAGTTTATTGCATC---TAA--------TTCTAAATTCTGGCAGGAGCTGATAAGAAAACTAAAAGCTTTAATGAGCCGCGACTGTGCATCAGGAAATTCTTTCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGAGGAGGAGCTGTGTGGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTGTGTGGTGGCATCATAGTCAATGGGCCACGTAAGTCATTCTTTTTACT
s HiC_scaffold_1  96781206 1078 + 233722169 TTTTGCCAGTTTTCCTTAGCTC-----TCAGCTATGTGACTGAACTGACAGACCGAATCCGAGCAAAATCCTCACCCAACACGAGTGAAGTTCAAGATTCAGCTGACTTCATGAGCTTCTTCCCAGACTTTGTGTGGACACTGAGAGATTTCTCCCTAGAATTAGAAATAGATGGAGATTCCATTTCTCCAGATGCTTACCTGGAGAATTCTCTGAAGCTAAAAAAAGGTAATATGGATAAATAACTGGTAAATGGAAATATCAAGACATTAGAAATTATCAATGTGTACTTTTCTAATTATACTCTTTTTACATTTAGAGTTTTCTATTACTTCTACCTACCTACACCTGGAAATTAATGCTTAATACCTGTGTTAAGTGattcaactttaaaatattttcatccttGTTCAGAGACAAGTTTCTGTCTTTCATGTTTACTATGCTTAGTTTACATTTATCTTGGTGCTTACCATTTGTGATTCTGTGTTTATCCAAAGAATGTGGTGTACAGTGAAtgtatatttgaagaaaatagatCAAAGTAGTATAGTAGCACAAGTCTTTGGAAAGTATGTTCCACAGACAAATGCTAACTAATTAGAGACTgcctcttttcttga-----aatatatgTTATTAGAAAAACATTGAGCCCATTCATTTATACATTGTCTACAGATG--CTGGGA--TGTTATAGTCAGTGAGTTGAGTGCAGAGGAAAGAGATTATCTGGCCTGAAAAGCTGACAATATACACTATTTGGTCCTTtacaaaaat--gtttgcaaattctTGCAGCAGGTAAacccttttttttatcttcttacaGGTACTGGTgagaatgttaaaaattataatctCCCCGGACTCTATATCTGCAAGTTCTTCCCAAAGAAGAAATGCTTTATCTTCGATAGATCCACTCATCCAAAGTAGCTGGCCCAGCTCGAGACCCTGCACGATGATGAGCTGGATTCTGAATTCGTGGGGCAAGTTGCAGAATTCTGTTCTTACATCTTCAGCTCTGCCAGGACTAAAGCTCTTCCGGGAGGCATCCGTGTCAATGGACCTCGTGAGT-ACCCTTCCCACT

a score=8489
s chr3           142629938 248 + 160039680 TTTTCTAGTTTTC-TTAACTTCGAATGCCAGCTATGTGACGGAGCTAACTGATCTTATCAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGATTCCGCTAACTTTGTGGGCTTCTTTCCAACCTTTGTGTGGACTCTGAGAGATTTCTCCCTCGAGCTGGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTCCCTGACCCTGAAAAAAGGTACC-------TGGACTTGGTGAAATG
s HiC_scaffold_1 128768899 251 + 233722169 TTTGCCAGTTTTCCTTAGCTCC-----TCAGCTATTTCAGAGAGCTGAAAGGCCTGATCAGAGCAAAATCCTCACCTGACACCAATGAGACTGAAGATTCAGTTGGCTTAATGAGCTTCTTCCCAGACTTTGTGTGGGCGCTGAGAGATTTCTCCCATGACTTGGAGCTAGAGGGACAGAGCATCTTTGCTGAAACCCACTTGGAGAATGCCCTAAAGCTAAAGCAAGGTAGCAGAGATGTATAATTGGTGAAATG

a score=8330
s chr3           142630499 290 + 160039680 TTCTAAATTCTGGCAGGAGCTGATAAGAAAACTAAAAGCTTTAATGAGCCGCGACTGTGCATCAGGAAATTCTTTCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGAGGAGGAGCTGTGTGGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTGTGTGGTGGCATCATAGTCAATGGGCCACGTAAGT--CATTCTTTTTACTTCTCACCTTGAC
s HiC_scaffold_1 128770849 290 + 233722169 TTTTATCTTCCTGCAGGCACCAGTGAGGGAGAGAAAAATGCTGATCTGTCCCTACTCTGTATCCAGAAGTTCTTCCTGCAAAAGAAATGCTTTGTCTTCAATAGGCCTGGTGATGAAAAGATGCTGCACAAGCTGGAGACATTGCACGATGATGAGATG-GACCTGAATTTAGGCAACAAGTTACAGAATTCTCTTCTTACATCTTCAGCTCTTCCAGGACCAAAATTCTCCCAGGAAACATCAAGGTCAACAGACCTCATAAGTACCCTGCctctta-ttttctctctgac

a score=9037
s chr3           142630499 287 + 160039680 TTCTAAATTCTGGCAGGAGCTGATAAGAAAACTAAAAGCTTTAATGAGCCGCGACTGTGCATCAGGAAATTCTTTCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGAGGAGGAGCTGTGTGGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTGTGTGGTGGCATCATAGTCAATGGGCCACGTAAGT--CATTCTTTTTACTTCTCACCTT
s HiC_scaffold_1  96774431 285 + 233722169 ttttattttcctgtaagcatcaatcagaaaga-aaaaaatataatctgCCCTGACTCTGTATCCAGAAGTTCTTCCCAGAGAAGAAATGTTTTGCCTTCATTAAGCCTGCTTGGGAAAAGA---TGAGCAAGCTACAGACACTGCACAATGATGAGCTGGACTCTGAATTTGTGCAACAAGTTACAGAATTCTGTTCTTACCTCTTCAGCTCTTCCAAGACCAAAACTCTTCCAGGAAACATCAAGGTCAATGGGCCTTGTAAGTACCTTTCgcctattttctcatttt

a score=15747
s chr3           142631953 326 + 160039680 CACTCTACTAACTGACAGC-----CATTTTCTTGACTTTTGTAGGTCTAAAGAGCCTGGTGCAGACCTATGTTGGTGCCATCAGCAATGGGTCTCTCCCCTGCATGGAGAGTGCTGTGCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCCACTATGAAGAACAGATGAATCAGAAGATTCAGATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACA-GGCCAATTGAGAGTGAGGCCATTGAGGTCTTCCTGAAGAATTCTTTCAAGGATGTAGACCAAAAGTTCCAGACAGAATTAGGGGTAGGT
s HiC_scaffold_1  96783046 332 + 233722169 CACTGTATTGATAAAAAGCATCATCACTTGCTCTCTATGTGCAGGTCTTGAGAGCCTGGTATTGACCTATGTTGATGCCATCAGCAATGGGGAGCATCCCTGCATGGAGAATGCAGTCCGGGCCTTGGCCAAGAGGGAGAACTCAGCTGCTGTGCAGAAGGCCTTGGACCACTATGACCAGCAGATGGGTCTGAAGGTGCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTTGTGAGAGGGAGGTCACTGAGATCTTCATCCAACATTCCTTCAAAGATGTTGGCCAGGTATTTCAAAAGGATTTTGCAGTAGGT

a score=17113
s chr3           142631972 304 + 160039680 CATTTTCTTGACTTTTGTAGGTCTAAAGAGCCTGGTGCAGACCTATGTTGGTGCCATCAGCAATGGGTCTCTCCCCTGCATGGAGAGTGCTGTGCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCCACTATGAAGAACAGATGAATCAGAAGATTCAGATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGCCAATTGAGAGTGAGGCCATTGAGGTCTTCCTGAAGAATTCTTTCAAGGATGTAGACCAAAAGTTCCAGACAGAATTAGGGGTA
s HiC_scaffold_1  96743295 304 + 233722169 CATCTTTTATTTCTATGAAGGTCTACAGAGCCTGGCACAGACCTATGTCAATGCCATCAACAATGGGGATCTGCCCTGCATGGAGAATTCAGTCCTAGCATTGGTGCAGACAGAGAACTTAGCTGCAGTGCAGAAGGCCTTGGCCCACTATGACCAGCAGATGGGCCAGAAGGTTCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTGTGAGAGGGAGGCCTTGGAAATATTCACAAAGTACTCTTTCAAGgatgaggaccaaagcttccaGAAGGAATTACAGGTA

a score=11481
s chr3           142631987 252 + 160039680 TGTAGGTCTAAAGAGCCTGGTGCAGACCTATGTTGGTGCCATCAGCAATGGGTCTCTCCCCTGCATGGAGAGTGCTGTGCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCCACTATGAAGAACAGATGAATCAGAAGATTCAGATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGCCAATTGAGAGTGAGGCCATTGAGGTCTTCCTGAAGAATTCTTTCAA
s HiC_scaffold_1 128777336 248 + 233722169 TGTAGGTCTAGAGAGCCTGGTGCTGAGCTGTGTCAGTGCCATCAGCAGTGGGGATCTGCCCTGCATACAGAACGCAGTCCTGGCCTTGG-CCAGAGAGCGACCTCAGCTGCAGTGC---AGGCCTTGGTCCACTATGACCAGAAGCCAGGCCAGAGGGTGCAGCTGCCAACAGACACCCTGCAGGAGTAGCTGGACCTACAAAGGGCCTGTGAGAGGGAAACCATCAAGATCTTCATCAGAAATCCCTTGAA

a score=14328
s chr3           142631987 292 + 160039680 TGTAGGTCTAAAGAGCCTGGTGCAGACCTATGTTGGTGCCATCAGCAATGGGTCTCTCCCCTGCATGGAGAGTGCTGTGCTGACTTTGGCCCAGATAGAGAACTCAGCAGCAGTGCAAAAGGCCATCACCCACTATGAAGAACAGATGAATCAGAAGATTCAGATGCCCACAGAAACCCTCCAGGAGCTCCTGGATCTGCACAGGCCAATTGAGAGTGAGGCCATTGAGGTCTTCCTGAAGAATTCTTTC---AAGG-----ATGTAGACCAAAAGTTCCAGACAGAATTAGGGGTAGGT
s HiC_scaffold_1  96775474 297 + 233722169 TGCAGGTCTAAAGAACCTGGTGATGACCTACATCAGTGCCATCAGCAGTGGGGAACTGCCCTGCATAGAGAATGCAGTCTGGGCCTTGGCCCAGATAGAGAACTCAGCCGCTGTGCAGAAGGCCTTGGCCTACTGTAACCAGCAGATGGACAAGAAGGTGCAGCTGCCCACAGACACCCTCCAAGAGCTGCTGGACCTGCACAGGGCCTGTGAGGGGGAGGCCATCAAGA---TCATGAAACATTCCTTCATAAAGGAATACATATTGACTAAGAATTTCAAGAGGGATTGCTGGTATGT

a score=7714
s chr3           142633296 258 + 160039680 TCTCACCTTTCAACCATCCTTGTGATTT----TGTTCTTACCCAGAACCTGCTGGTAGCCAAGCGAGATGCCTTTATCAAGAAGAACATGGATGTCTCATCAGCTCGTTGCTCAGACTTGCTGGAGGATATTTTTGGACCCCTGGAAGAAGAAGTAAAATTAGGGACATTTTCTAAACCAGGAGGTTACTACCTCTTCCTTCAAATGAGACAAGAGCTAGAGAAAAAGTATAACCAGGCTCCTGGGAAGGGGCTCCAGGTAA
s HiC_scaffold_1  96789288 262 + 233722169 TCTCACTGCcttgctattgtttttatttgttatatTCATATTAAAGGCTCAGCTGcaaaaaaatgatataatttttgtGAACTGAATATGAAAGCATCTTCAGATCGTTGTTCAGCTTTGCTTCAGGATCTTTTCAGTCCCTTAGAAGAAGAGGTGAAACAAGGAATTTACTCTAACCTGGGAGGCTACCATTTTCTTATTCAGAAGGTACAAGACCTGAAGAAAAAGTACTATGAGGAACCCAAGCAGGGGATACAGGTAA

a score=8518
s chr3           142633296 258 + 160039680 TCTCACCTTTCAACCATCCTTGTGATTTTGTTCTTACCC----AGAACCTGCTGGTAGCCAAGCGAGATGCCTTTATCAAGAAGAACATGGATGTCTCATCAGCTCGTTGCTCAGACTTGCTGGAGGATATTTTTGGACCCCTGGAAGAAGAAGTAAAATTAGGGACATTTTCTAAACCAGGAGGTTACTACCTCTTCCTTCAAATGAGACAAGAGCTAGAGAAAAAGTATAACCAGGCTCCTGGGAAGGGGCTCCAGGTAA
s HiC_scaffold_1  96776312 261 + 233722169 TCTCACTCCTTGgctattcttttcattt-atttttacaattaaagACTCAGCTAGACAAAAAGTGATATAACTTTTGTGAGCAGAATATGAAAGCATCTTCAGATTGCTGTTCAGCTTTACTTCGGGATCTCTTCAGTCCCCTAGAAGAAGAGGTGAAACAAGGAATTTATTCTAAAGCAGGGGGCTACCATCTCCTTATTCAGAAGGTATAAGGCCTGAAGAAAAAGTCCTATGAGGAACCCAAGAAGGGGGTACAGGTAA

a score=8453
s chr3           142633300 260 + 160039680 ACCTTTCAACCATCCTTGTG--ATTTTGTTCTTACCCAGAACCTGCTGGTAGCCAAGCGAGATGCCTTTATCAAGAAGAACATGGATGTCTCATCAGCTCGTTGCTCAGACTTGCTGGAGGATATTTTTGGACCCCTGGAAGAAGAAGTAAAATTAGGGACATTTTCTAAACCAGGAGGTTACTACCTCTTCCTTCAAATGAGACAAGAGCTAGAGAAAAAGTATAACCAGGCTCCTGGGAAGGGGCTCCAGGTAAATCAAG
s HiC_scaffold_1  96744313 262 + 233722169 ATTTTGCTAACATCTCTGTGGGATTTTGTCCCTTTGAAGACACTTCTAGATGCAAAGCTGGAAGACATTTGTGAGCGGAACAAGGCAGCCTCTTCAGAACACTGCTCAACTTTACTTCAGATTATTTTTGGTCCGCTGGAAGAAGAAGTGAGGCAGGGGATTTATTTTAAACCAGGAGGCCATAATCTCTTCCTTCAAAAAATGGAAGAGTTGAAGGCAAATTACTATCAACAGCCAAGGAAAGGACTACAGGTATCTCCAG

a score=4315
s chr3           142658853 167 + 160039680 cttcacccctTTCCACTTCCATTATGCTGATTTTATTACCACTTTCTGGAGGCCCTGATGC---------TAAGTGTCTAATCCCTCCTTCCCTCTATGCTTTGCAGGTTTTTCCATGGGCTCCACTGTGCAGTCTCAAACCAGGGGCATCTGGATGTGGTGTGTGCCTCATCCCG
s HiC_scaffold_1  96686356 170 + 233722169 CTTCAGTTTTCTCTCCTGC--TTTTGATTATTTTA--ACTTCTATCTCAATTCCCAGATGCACTTTCCATTAACT--CTACTCACTCATGCCTCCTAAGCTTTACAGGATTCTCTGTGGATCCCACAATGCAGTCTAACAACAAAGGAACCTTCATGTGGAGTGTGCTACAGCCTG

a score=10309
s chr3           142658873 218 + 160039680 ATTATGCTGAT-TTTATTACCACTTTCTGGAGGCCCTGATGCTAAGTGTCTAATCCCTCCTTCCCTCTATGCTTTGCAGGTTTTTCCATGGGCTCCACTGTGCAGTCTCAAACCAGGGGCATCTGGATGTGGTGTGTGCCTCATCCCGAGAAACCTGACCACACCCTAGTTCTGGATGACACCGAGGGCCTAGGAGATGTTGAGAAAGTAAGAATGGGG
s HiC_scaffold_1  96770868 218 + 233722169 ATTGTGCTAACATTTATCTCAATTTTGTACATACT-TGATATTAAAACTCACCCATCTCATCTCACCCGTGTTTTGCAGGCTTCTCTCTGGGCTCCACGGTGCAGGCCCACATCACAGGAATCTGGATGTGGTGTGTGCCTCATCCCAAGAAGCCAGATCAGACTCTAGTTCTGCTTGAAACCAAGGGCCTGGGAGATGTTGAGAAAGTCAGGATGAGG

a score=9736
s chr3           142658938 196 + 160039680 CTATGCTTTGCAGGTTTTTCCATGGGCTCCACTGTGCAGTCTCAAACCAGGGGCATCTGGATGTGGTGTGTGCCTCATCCCGAGAAACCTGACCACACCCTAGTTCTGGATGACACCGAGGGCCTAGGAGATGTTGAGAAAGT--AAGAATGGGGTTCAATTATTGATTCAGCC--TTAATATCTGAGTAT--TGTATGCTT
s HiC_scaffold_1  96740162 200 + 233722169 CTCTCCTTTGCAGGCTTTTCTGTTGGCTCTACGGTGCAGTCCCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCATCCTGAGAAGCCAGACCACACCCTTGTCTTGCTTGACACTGAGGGTCTGGGAGACGTAGAGAAGGTAGAGGAGAAAGATTC--TTATTTGACCAACCTGTTCATCTCTAAATGTTCTTTATGCTT

a score=19209
s chr3           142660005 848 + 160039680 CCCTTTAATGAGTATGTGTTCTTTACTACTGCTCATTTGGAAAGTGACATAAGAACAAGACATACTCTCAACCTATACATGTGCTCTGACTTCCAGGGTGACAACCAGAACGACTGCTGGATCTTTGCCCTGGCTATACTTCTAAGCAGCACCTTTGTCTACAACAGCATCGGGGCCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTCTATAGTTCATTCC--------------------AACCTTCATGACT-------CCAGCTTTTTCTTAATGC-------------------------AACATGAA-----------ATGATGGTAAGTCACGTATATGTAGCAGGCAGTGTTCACACTGAAGTTAGGGAT-GAGGCAGATGAAGCTTTTGG------TTTAGGGTTGGGAAGATGTGGAATTATTGTGGCCTGGGAAATCTGGAGCTTTGGATAGTGCTACAGTTGTTTCAGTGGCTTTCCTTAATTAGCTGATCAGCTATGTGACAGAGCTGACTGACAGAATCAGAACAAGACGCTCCCCTGACC---ATCAAGCTTTGGAGGACTCAGATGAATATGTGAGCTTCTTCCCAGACTTTGTATGGACCCCGAGAGACTTCTGTCTTGAGCTGAAAACAAATGGACAACCCCTCTCAGCAGACGAATACCTAGGGAATTCCCTGAAGCTTCTTCAAGGTA--AGAGACTTACAACTGGTAAATGAGGATGCAAGAaaaataaaacaaaacaaaacaaaacaaaacaaaacaaacaaaacTGCGAGTTCGGCTTCTAGCTATAATTTTCTTATACCTGGAGTTTTTATTTCGTCTTGCTGACTTCACATTGAAATTAGTGTTTAATATAT-ACTTAGTCAGATTGACTTGAACATTTTCTCTTATTTATT
s HiC_scaffold_1  96772157 829 + 233722169 CTCATAAATGAGCATAA---TCTTACCACTGATGACCTTTcaaatgacatacaaataaaa-atactcacAAGCAAAATGTGTGCTTT--CTCCCAGAGTGACCCCTGGAATGACTCCTGGATCTTCACCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTCTTGTGGTCCAGAACACCAGTAAAAGTAGATAAGAAACCTTTTTTAGTAAACCAGCCACCTAACTCTGGATCCTGGTGGGCTATACTcaagaacagaaaacataaacaataaCTTATGTGCAAGAAAGACTCATGTATCTACTAA--AGAAATGACACTCATGTTAAGAACAAAGGCAAATGAAACCTTGGGGATTCATATAGTGAAGGGAGGTCTTG---TTATTTTTGCC-----------------------------------------AGGTTTTC-----TTAGCCTCTCAGCTGTGTCACAGAGCTGACAGATCTGATCAGAGCAAAATCCTCACCTGACACAGATAAGACT---GAAGACTCAGCTGACTTTGTGAACTTCTTCCCAGATTTTGTGAGGACTCTGAGAGATTTCTGCCTGGAACTGACACTAGATGGACAGAGCATCTCTGCAGACAGCTACCTAGAGTATTCCTTGAAGCTGAAGCAAGGTGGTAGGGATATA-AATTGGTGAA----------------------------AGGACATAGTAAATCATtaccaat--tattattttttacttttctacttATGCTTTT-TTACACT---GTTTTCTATTTCTATCACCTGGTTGTTCCCAGAAATTAATGTTTAATATCTGAATCAatagatttcatttaaaaatattttctactttgtt

a score=47400
s chr3           142660024 2852 + 160039680 TCTTTACTACTGCTCATTTGGAAAGTGACATAAGAACAAGACATACTCTCAACCTATACATGTGCTCTGACTTCCAGGGTGACAACCAGAACGACTGCTGGATCTTTGCCCTGGCTATACTTCTAAGCAGCACCTTTGTCTACAACAGCATCGGGGCCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTCTATAGTTCATT----------------------CCAACCTTCATGACTCCAGCTTTT-----------------------------TCTTAATGCAA--CATGAAATGATGGTAAGTCACGTATATGTAGCAGGCAGTGTTCACACTGAAGTTAGGGATGAGGC--AGATGAA-GCTTTTGGTTTAGGGTTGGGAAGATGTGGAATTATTGTGGCCTGGGAAATCTGGAGCTTTGGATAGTGCTACAGTTGTTTCAGTGGCTTTCCTTAATTAGCTGATCAGCTATGTGACAGAGCTGACTGACAGAATCAGAACAAGACGCTCCCCTGACC---ATCAAGCTTTGGAGGACTCAGATGAATATGTGAGCTTCTTCCCAGACTTTGTATGGACCCCGAGAGACTTCTGTCTTGAGCTGAAAACAAATGGACAACCCCTCTCAGCAGACGAATACCTAGGGAATTCCCTGAAGCTTCTTCAAGGTAAGA--GACTTACAACTGGTAAATGAGGATGCAAGAaaaataaaacaaaacaaaacaaaacaaaacaaaacaaacaaaacTGCGAGTTCGGCTTCTAGCTATAATTTTCTTATACCTGGAGTTTT-TATTTCGTCTTGCTGACTTCACATTGAAATTAGTGTTTAATATATAC-TTAGTCAGATTGACTTGAACATTTTCTCTTATTTATT--------------TGTCTTTCAGA--------GTTTCATTTACA---------GAGATTA--ATTTGACTATTCTGCTTT-------------------AGAATGAAGATATATTTGAAAAAAAAGCTAGAATGAAGTGTTACATTCTC-CAACTGTTAGAATAGTGTGGCCCCCAGACA--TGATGGGTTGTCAGTG-TGGCCCCCAGACATGATGGGTTGCCAATAGTCTATGGAAACTAAATGATGCTGGACATATGGGTTTTCATGTTGTCTG-------TGTGA----ATAGTCCACATACTCCAAGTGGGTTGAATCCTTAGATGCCACCTTTTCTGATAAGACTAACAGAGCATTTACTATGCCTTTTACAAAAATTGGAAGATATTTAAAGCAGAAAACACTGCCCAACTCCCACACATTCCCATTCTCTTTTCTtgtattgtgttgtcaggatcacactatgtgatccaggctggcctcaacttttaatcctcctgccttcaagttttgagtgttttaggatttcaaatgttcacATGATGGAATTTAAAACATATACTCAGCTTATACATCCTGACTGGATATCCTGTTTTTCACTCCATCTAGGTTGTAGTCAAAAAGAAAAAGAGTTAAATCTGTCTCAGCTCTGTATCCGTAAATTCTTCCCAACTAAGAAATGCTTTGTCTTTGAGCGCCCAGCACCCGGGAAGAAGATTGGCCAGCTGGAATCACTACAGGATAAAGACCTGGACTCTGACTTCGTGAAACAAGTGGCAGAGTTCTCTTCCTATGTTTTCAGGTCTTCCAAGATTAAAAAAATTCCAGGAGACCTCAAGGTCAATGGACCGCGTAAGT-CCTATGGCAGACTCTTTGCTCACT-----------GTATCATGAGACAGCAATGA-CCTACGTCAACTTTGAAGAAATGTTAATCTATCACCACTGCACTGCTAAACTGTAGATGAAA-CCAGCACTTATAATCAATTTGTCTATCAGATTTTCTTGTTGTCAAA-AGAGAAAAGGAAACAAAAGAAAGTTAAAA----------AAAATGTTTTAACTCAACTGG-----------GCACCATGGAC-TTAAGTAGACCAATAAGATAATC----------ACTAAACAAGTATAGCTCTTAAATTTTAAAGTAAGTCCAATATAGTGTACATGGGGCTGCTCATTGTCAAGTTACCACACACAGAATGTTC--------TCTTAGGAATGCTAATTATTCTAATCAAACTAACAG--AGAGTCTTTGAC--------CATGATTTGTTCC-CAAATGGGAGT--GATATTTACTATGCACAGTGTTGGCGATGCAGAGAGCCATGAAGGAGGTATGGAGCCTGTTCTCGTAGTGCCTATG----------TTAAAATGAATGCAAACATTCCGTAGACACGGGCCCATGAAATCTCCATCCAGCAttcttagcctttagggttgcaggcacctcatgagaggatcttgctaagaggaaagtctaattctatcagtgtgagacagaggctgggatgcttcagtttgtcattctttcaaac-------------gatgctaaggacactgatgctctacaacatcatatctagtgactggcaTATCTAGAATT---TCACAGAATAGACTTGTCTTCA-TCCATCTGTTGCAAATATTGTTACCTGTTTCCTGTTTATAGGACTAAAGAATTTGGTGACAACCTATGTGAACACCATCAGCAATGGGTCTCTGCCCTGCATGGAGAGTGCTGTCCTGGCTCTGTCAGAAACAGAGAACTCAGCAGCAGTGCGAAAGGCCATTGCCCACTATGACCAGCAGATGAGCCAGAGTCTGAAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACAGGAGC-AGTGAGAAAGAAGCCATCAAGATTTTCATGGAAAATTCCTTCAAAGATGTTGACCAAGTGTTCCTAACAAAATTAGAGGTAA---TTTTTTCCCTCAAGT-------------TTCTGGAATGTAGATTTTTAAAAGCAAGTCAAATGGGAGTTGTGATT-----AGGCAACTGCGACTAGATTTTGAAGTAGTAACAGATAATTATTAATAATCACAATA--AATAAAAA---TGAATTGCAATACACTCAAAACTTTGCAAC-ATTACTCCTGTCATGAATA
s HiC_scaffold_1  96780807 2771 + 233722169 TTTTTGCCTTTGCTGATCTGCAGATTGACAGAATAAAAAAACA-GTGTTCAA-------ATGTGTTCTGATTTCCAGGATGACAACCAGAACGACTCCTGGATCTTTGCCCTGGCGATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAACCATCAACCAGCAGGCCATGGACCAACTGCAGTATCCTTTGTGTAGTCCAGGAGGAGAGACCCGTGTGAGTAAACCAGCCA-CACGGCTCTAGGCCCTGGGACAGCCAgcccaaaaagacaaaacagcatTAATTCAAGTCAGGAAACACTCGT------CATATACTTACTAA--AGAAATCACACTTCGGTTaagaacaagaataaaataaaagcttgtgGATT-------------TGTTAAATTAGTGTGGTATGAAGGGCCC--------------TGCTAC-----TTTTGCCAGTTTTCCTTAGCTC-----TCAGCTATGTGACTGAACTGACAGACCGAATCCGAGCAAAATCCTCACCCAACACGAGTGAAGTTC---AAGATTCAGCTGACTTCATGAGCTTCTTCCCAGACTTTGTGTGGACACTGAGAGATTTCTCCCTAGAATTAGAAATAGATGGAGATTCCATTTCTCCAGATGCTTACCTGGAGAATTCTCTGAAGCTAAAAAAAGGTAATATGGATAAATAACTGGTAAATGGAAATATCAAGACATTAGAAATTATCAA---------------------------TGTGTACTT---TTCTAATTATACTCTTTTTACATTTAGAGTTTTCTATTACTTCTACCTACCTACACCTGGAAATTAATGCTTAATACCTGTGTTAAGTGattcaactttaaaatattttcatccttGTTCAGAGACAAGTTTCTGTCTTTCATGTTTACTATGCTTAGTTTACATTTATCTTGGTGCTTACCATTTG-TGATTCTGTGTTTATCCAAAGAATGTGGTGTACAGTGAAtgtatatttgaagaaaa---tagatCAAAGTAGTATAGTAGCACAAGTCTTTGGAAAGTATGTTCCACAGACAAATGCTAACTAATTAGAGACTgcctcttttcttga------------aatatatgTTATTAGAAAAACATTGAGCCCATTCATTTATACATTGTCTACAGATGCTGGGATGTTATAGTC-----------AGTGAGTTGAGT------------------------------GCAGAG----------------GAAAGAGATTATCTGGCCTGAAAAGCTGACAATAT------------------------------------------------------ACACTATTTGGTCC----------------------------------------------TTtacaa----aaatgtttgca------aattct---------TGCAGCAGGTAAaccct------------tttttttatcttcttacaGGTACTGGTgagaatgttaaaaattataatctCCCCGGACTCTATATCTGCAAGTTCTTCCCAAAGAAGAAATGCTTTATCTTCGATAGATCCACTCATCCAAAGTAGCTGGCCCAGCTCGAGACCCTGCACGATGATGAGCTGGATTCTGAATTCGTGGGGCAAGTTGCAGAATTCTGTTCTTACATCTTCAGCTCTGCCAGGACTAAAGCTCTTCCGGGAGGCATCCGTGTCAATGGACCTCGTGAGTACCCTTCCCACTAGTTTCACTCATTCACAGCAATGAggagcaaggaaaaaaaatgaatctgtTTCAGTTTC--AGGTTTGCTAATGAGCCACTATTGCATTG---AATTTTAAATGACCTCCAGCTTTCTAAAAGATTTTCttaattacatttcttgattggaaaatagagggaaaagcttaaaggaaaagagaagttcttgctttaaaattccttaaataaatgagacttgcAGTCTGCAATATGGAAGCCACTTAGAAAAATAGGCTTATTTAAATTTAAGAGTacattaatttaaatgaaaaaatttaaaacaaatctgA---AGGCTATATTCAAAGGCACAT------ATCTTCGTGCACCTAAtgattattgtattttttgaaaatgctgttcattttaataaaacaaatggcCACATCTTTTGAATGGAATAGCATTTCTTGTTCTATGAACAGTGGTCAAATACATACTGTGAACAAGGATGATAATACAGATATAAATGAA--AGGAATAGAA-------TTCTAGTACCAAGGGAGTATAGATTTAAAATGGATGGAAAACTCTAATTAACA--GTCCTATGTAGCATATATCCAGGAATCGCAATCT---AGTTTATATACACATCATCTGGAGGTATTCTGAAGAGGAATATCAATTTCAGCATGTCTG-GACAGAGGTC-------------TTGTATTTCTAATAAATTACCAAGTATGTTGGTAATTATAACAATGACACTTTGAGGCA-AATAGGAGGTAACTGACAtacttgtaattattttaaaaaggagactttTTTCCACTGTATTGATAAAAAGCATCATCACTTGCTCTCTATGTGCAGGTCTTGAGAGCCTGGTATTGACCTATGTTGATGCCATCAGCAATGGGGAGCATCCCTGCATGGAGAATGCAGTCCGGGCCTTGGCCAAGAGGGAGAACTCAGCTGCTGTGCAGAAGGCCTTGGACCACTATGACCAGCAGATGGGTCTGAAGGTGCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTTGTGAGAGGGAGGTCACTGAGATCTTCATCCAACATTCCTTCAAAGATGTTGGCCAGGTATTTCAAAAGGATTTTGCAGTAGGTCGTTTTTGTCTCAAGTATGTTGATTTGGATTAGAGAAGGAAAAGTACTGCAAGGAAATGAAATAAGTATTCATTTTGAGAAAGGAAATTATTCGTAGATTTTGCAATGGTATTAGCTGCCTATGAATAATCACAATACTAATAAGAAAGTTTTATTATTATAGACTCaaagtttgaaaataattttttcttttatgacta

a score=17532
s chr3           142660027 826 + 160039680 TTACTACTGCTCATTTGGAAAGTGACATAAGAACAAGACA-TACTCTCAACCTATACATGTGCTCTGACTTCCAGGGTGACAACCAGAACGACTGCTGGATCTTTGCCCTGGCTATACTTCTAAGCAGCACCTTTGTCTACAACAGCATCGGGGCCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTCTATAGTTCATTCCA--------------------ACCT-----------TCA-----TGACTCCAGCTTTTTCTTAATGC--------AACATGAAATGATGGTAAGTCACGTATATGTAGCAGGCAGTGTTCA------CACTGAAGTTAGGG-----ATG-AGGCAGATGAAGCTTTTGGTTTAGGGTTGGGAAGATGTGGAATTATTGTGGCCTGGGAAATCTGGAGCTTTGGATAGTGCTACAGTTGTTTCAGTGGCTTTCCTTAATTAGCTGATCAGCTATGTGACAGAGCTGACTGACAGAATCAGAACAAGACGCTCCCCTG--ACCATCAAGCTTTGGAGGACTCAGATGAATATGTGAGCTTCTTCCCAGACTTTGTATGGACCCCGAGAGACTTCTGTCTTGAGCTGAAAACAAATGGACAACCCCTCTCAGCAGACGAATACCTAGGGAATTCCCTGAAGCTTCTTCAAGGTA--AGAGACTTACAACTGGT-AAATGAGGATGCAAGAaaaataaaacaaaacaaaacaaaacaaaacaaaacaaacaaaacTGCGAGTTC---GGCTTCTAGCTATAATTTTCTTATACCTGGAGTTTTTATTTCGTCTTGCTGACTTCACATTGAAATTAGTGTTTAATATAT-ACTTAGTCAGATTGACTTGAACATTTTCTCTTATTTATT
s HiC_scaffold_1 128768490 810 + 233722169 TTACCACTGATGACCTTTCAAGTgacataagaataaaaaaacacTCATGACCCAAAT---TGTCCTGGCCTGCAGAGTTACCCCCAGAATGACTCCTGGATCTTCACCCTGGCAATACTTCTGAGCAGCACCTTTGTGTACAACAGCATGGGAGCCATCAACCATAAGGCCCTGGACCAGATGCAGTATCCTTTTTATGGTCTAGAACACCAGGACAAGCAAACAAAAGACCTGTGTTAGTAAATCAACCACTGACTCTGGATCCTGGTGAAGCCcgctcaaaaaca-gaaaacataaacaataaCTTA---GGCGCAGAGAAGGTTCATGTATCTACTGAAGAAAAGGCACTCATGTTGGCAAATA------------TAGGTTTCGGAATTCGTTGAATAAATACGGCATGGGAGGTTC--------------TGTTATCTTTGC-----CAGTTTTCC----TTAGCTCCTCAGCTATTTCAGAGAGCTGAAAGGCCTGATCAGAGCAAAATCCTCACCTGACACCAATGAGACT--GAAGATTCAGTTGGCTTAATGAGCTTCTTCCCAGACTTTGTGTGGGCGCTGAGAGATTTCTCCCATGACTTGGAGCTAGAGGGACAGAGCATCTTTGCTGAAACCCACTTGGAGAATGCCCTAAAGCTAAAGCAAGGTAGCAGAGATGTATAATTGGTGAAATGAGG----------------------------------TAGCAAACCaccagaaattattattttttagttttctacttatcctttt-ttatatt---gttttctattgCTGCCACCTACCTGCTCTCAGAAATTAATGTTTAATACCTGAATTAatagatttcatttaaaaatattttcttctttgtt

a score=12253
s chr3           142660080 569 + 160039680 TACATGTGCTCTGACTTCCAGGGTGACAACCAGAACGACTGCTGGATCTTTGCCCTGGCTATACTTCTAAGCAGCACCTTTGTCTACAACAGCATCGGGGCCATCAACCAGCAGGCCATGGACCAGCTGCAGTATCCTTTCTATAGTTCA------------------------------TTCCAACCTTCATGACTCCAGCTTTTTCTTAAT--GCAACATGAAATGATGGTAAGTCACGTATATGTA--GCAGGCAGTGTTCACACTGAAGTTAGGGATGAGGCAGATGAAGCTTTTGGTTTAGGGTTGGGAAGATGTGGAATTATTGTG--GCCTGGGA--AATCTGGAGCTTTGGATAGTGCTACAGTTGTTTCAGTG-GCTTTCCTTAATTAGCTGATCAGCTATGTGACAGAGCTGACTGACAGAATCAGAACAAGACGCTCCCCTGACCATCAAGCTTTGGAGGACTCAGATGAATATG------TGAGCTTCTTCCCAGACTTTGTATGGACCCCGAGAGACTTCTGTCTTGAGCTGAAAACAAATGGACAACCCCTCTCAGCAGACGAATACCTAGGGAATTCCCTGAAGCTTCTTCAAGGTAAG
s HiC_scaffold_1  96741081 594 + 233722169 taaatttgttctgaCTTCCAGGTTGATGATAAGAATGACGCCCAGATCTTCGCCCTGGCAATTCTGCTGAGCAGCACTTTTGTATACAACACCATGAACAAAATTGACCAGGGTGCTATCGACCTACTGCAGTATCCTTT-TGTGGCTCAAGATAGGAGAACAGCCAGAGAGATCTGTACTCACCAGCTATATGGCTGTGAGATCTtgcaaatcacaaaaataaaaatttgataatctttgaaaatacaatataaataaacCTCATATTGGCTATGATAAAAGGTCAG--------TTTGGTTAAgtgggagagagaaaataaatgtttgaggagacaGGGAATAAAATATAGATTTAGGTGTTGTT----CTATTTTTGTGAACTTTCCTTAATT-GCATCTCAGCAATGTGACAGAACTCACAGATCTGCTCAGAGCAAGAAACTCACCTG-Ttattaa-----tgagaatgaagataaTAATGACTTAATGAGCTTCTTTCCAGACTTGGTATGGACTTTAAGAGATTTCTACCTAAGCCTAGAAGCAGGTGGAAAAGTCATCACACCAGATCAATACCTGGAGAACTCATTGAAACTCAAAGAAGGTAAG

a score=12395
s chr3           142661374 449 + 160039680 GGATATCCTGTTTTTCACTCCATCTAGGTTGTAGTCAAAAAGAAAAAGAGTTAAATCTGTCTCAGCTCTGTATCCGTAAATTCTTCCCAACTAAGAAATGCTTTGTCTTTGAGCGCCCAGCACCCGGGAAGAAGATTGGCCAGCTGGAATCACTACAGGATAAAGACCTGGACTCTGACTTCGTGAAACAAGTGGCAGAGTTCTCTTCCTATGTTTTCAGGTCTTCCAAGATTAAAAAAATTCCAGGAGACCTCAAGGTCAATGGACCGCGTAAGTCCTATGGCAGACTCTTTGCTCACTGTATCATGAGACA-------------GCAAT-GACCTA-CGTCAACTTTGAAGAAATGTTAATCTATCACCACTGCACTGCTAAACTGTAGATGAAACCAGCACTTATAATCAATTTGTCTATCAGATTTTCTTGTTGTCAAAAGAGAAAAGGAAACAAAAGAA
s HiC_scaffold_1 128770838 457 + 233722169 GAAAATCCCTTTTTTATCTTCCTGCAGGCACCAGTGAGGGAGAGAAAAATGCTGATCTGTCCCTACTCTGTATCCAGAAGTTCTTCCTGCAAAAGAAATGCTTTGTCTTCAATAGGCCTGGTGATGAAAAGATGCTGCACAAGCTGGAGACATTGCACGATGATGAGATGGAC-CTGAATTTAGGCAACAAGTTACAGAATTCTCTTCTTACATCTTCAGCTCTTCCAGGACCAAAATTCTCCCAGGAAACATCAAGGTCAACAGACCTCATAAGTACCCTG-----CctcttattttctctctgacaaggcaaaaaataagaaatacaataaaCCTAGCTTCAGCTTTGAA-AAGTGTAAATTTACTGCTTCTGTTGTGTAAGATTGTAGATGGCGCCaatctttataaaataatttattattcaaATTTCTTAATGGAAAAGGATGGGAGAGTCCGGAAGaa

a score=42226
s chr3           142661378 2141 + 160039680 ATCCTGTTTTTCACTCCATCTAGGTTGTAGTCAAAAAGAAAAAGAGTTAAATCTGTCTCAGCTCTGTATCCGTAAATTCTTCCCAACTAAGAAATGCTTTGTCTT---TGAGCGCCCAGCACCCGGGAAGAAGATTGGCCAGCTGGAATCACTACAGGATAAAGACCTGGACTCTGACTTCGTGAAACAAGTGGCAGAGTTCTCTTCCTATGTTTTCAGGTCTTCCAAGATTAAAAAAATTCCAGGAGACCTCAAGGTCAATGGACCGCGTAAGT-CCTATGGCAGACTCTTTGCTCACTGT----ATCATGAGACAGCAATGA------CCTA-CGTCAACTTTGAAGAAATGTTAATCTATCACCACTGCACTGCTAAACTGTAGATGAAACCAGCACTTATAATCAATTTGTCTATCAGATTTTCTTGTTGTCAAAAGAGAAAAGGAAACAAAAGAAAGTTAAA----AAAAATGTTTTAACTC---AACTGGGCACCATGGACTTAA-----GTAGACCAATAAGATAATCACTAAACAAGTATAGCT-CTTAAATTTTAAAGTAAGTCCA----------------------------ATATAGTG-----------------TACATG-----GGGCTGCTCATTGTCAAGTTACCACACACAGAATGTTCTCTTAGG-AATGCTAATTATTCTAATCAAACTAACAGAG--AGTCTTTGACCATGATT-----TGTTCCCAAATGGG-AGTGATATTTACTATGCACAGTGTTGGCGATGCAGAGAGCCATGAAGGA-GGTATGGAGCCTGTTCTCGTAGTGCCTATGTTAAAATGAATGCAAACATTCCGTAGACACGGGCCCATGAAATCTCCATCCAGCAttcttagcctttagggttgcaggcacctcatgagaggatcttgct-aagaggaaagtctaattctatcagtgtgagacagaggctgggatgcttcagt-ttgtcattctttcaaacgatgctaaggacactgatgctctacaacatcatatctagtgactggcaTATCTAGAATTTCACAGAA---TAGACTTGTCTTCATCCATCTGTTGCAAATATTGTTACCTGTTTCCTGTTTATAGGACTAAAGAATTTGGTGACAACCTATGTGAACACCATCAGCAATGGGTCTCTGCCCTGCATGGAGAGTGCTGTCCTGGCTCTGTCAGAAACAGAGAACTCAGCAGCAGTGCGAAAGGCCATTGCCCACTATGACCAGCAGATGAGCCAGAGTCTGAAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACAGGAGCAGTGAGAAAGAAGCCATCAAGATTTTCATGGAAAATTCCTTCAAAG--------ATGTTGACCAAGTGTTCCTAACAAAATTAGAGGTA---ATTTTTTCCCTCAAGTT-------TCTG-------GAATGTAGATTTTTAAAAGCAAGTCAAATGGGAGTTGTGATT-----AGGCAACTGCGACTAGATTTTGAAGTAGTAACAGATAATTATTAATAATCACAATAAATAAAAATGA----ATTGCAATACACTCAAAACTTTGCAACATTACTCCTGTCATGAATAAGGTAGTGATAtcccccttcaatgaattaatg---acagagagccaattagtgtatctgatcatattgcatgcccagtgtc---------------------agcaaactgattcaatattcaag-----ccaataacaaattcacattgagccatgtttagtccttgtgtcatctttaACCCAGTCTGAAAAAGTAG--TTTAACATCTAAAGG------------TGAAAATCTCTGCTCTGAACTTCACTGTCAAGGAGCAAGGATGACGT-CAGTAAAAGCTGGCAAGAGAG-------GAAGAGATCTAGTTACAGTCAGCACTCATAtatttttctttgttttgcatttgtgtttgttttgtgttttgtgtttgttttactttTAAGGAATTCTCCCCAAAATTCTAAACTC-TGGCTTTCTTTTTCTTATTATTTTTTCTTCATGtatttattattattattattaaaGACGGAATTAGAAAGAAGGCAAGCAAAGGGAATTCTGTAAGAAGAATCAAGAGGCATCCTCAGATCGCTGTTCAGTTCTGCTTCGGGATATTTTTGGTCCACTAGAAGAAGACTTGAAGCAGGGTGTTTTTTACAAACCAACGGGTTGCTGTCTTTTCAGCCAGAAGATACAGGGGTTGAAGAGAAAG---TATGAGGAACCTGGGAAGGGCG--CAGGTAACCA
s HiC_scaffold_1  96774424 2152 + 233722169 ataccttttttattttcctgtaagcatcaatcagaaagaaaaaaatataa-tctgCCCTGACTCTGTATCCAGAAGTTCTTCCCAGAGAAGAAATGTTTTGCCTTCATTAAGC------CTGCTTGGGAAAAGATGAGCAAGCTACAGACACTGCACAATGATGAGCTGGACTCTGAATTTGTGCAACAAGTTACAGAATTCTGTTCTTACCTCTTCAGCTCTTCCAAGACCAAAACTCTTCCAGGAAACATCAAGGTCAATGGGCCTTGTAAGTACCTTTCgc---ctattttctcatttttaaaaccaaGAATGAGAAGTAAAATGAACCTAGCTTCAGCTCTGAA-AACTGCAAATCTACTTCTCCTGTTGTGTTAAATTGTAGATAACACCAAACTTAATAATAGATTTCATTAATTGAATTTCTT--------AATAGAAAATGATA---AGGAAAGTCAAAGAGGAAATAagtttcatttctgaaaattgcCTCATTAAACTGAACCTCTTTCGAC-AATATGGCAGCTACTAGGCCACTGTTGCTATTTGAATATAAAGGTAAATTAatctaaataaaaggaaattaaaaactgagaTCTAATGGCTATATTTTAAGGGCTCATATGCCCATGTGCTATTCACTGTTTTATCAGTACATAAAGAAAGTTCTCTTGGATAATGTTACTTAGTCTAGTTATTCAAATAGTGGTACcttttggttgggattgcatttCTTCTTACACAAATAGTGA----------ACAAAGCCTTACTGTGGCCAGGAATGATGACATATGGTTTGG------TCCTAATGGTACTTGTGGTACA-----TGCAAATATTTAGTAAACAGAAGTCTATGAGATTTAGAACCAGGATTC----------AAATTGCATACACATCCCCTGGGGATCCTGCTGAAGAGGAGGATCTAATC---------TAGCACAGAATTTGAAATGTTGCATTGTTAGCAAATTGCAGGATGGTGCTGAGAACATTGATACTTTGAGAGAA---ACATGGTAACTG--ATATGCTGAATTACACAAAAaaagagtcttttctttttttatt--------ataacatCCCCTGCTCTGTGTATGCAGGTCTAAAGAACCTGGTGATGACCTACATCAGTGCCATCAGCAGTGGGGAACTGCCCTGCATAGAGAATGCAGTCTGGGCCTTGGCCCAGATAGAGAACTCAGCCGCTGTGCAGAAGGCCTTGGCCTACTGTAACCAGCAGATGGACAAGAAGGTGCAGCTGCCCACAGACACCCTCCAAGAGCTGCTGGACCTGCACAGGGCCTGTGAGGGGGAGGCCATCAAGA---TCATGAAACATTCCTTCATAAAGGAATACATATTGACTAAGAATTTCAAGAGGGATTGCTGGTATGTAATTTTTATCTCAAGATATATTGATTTGGGTGAGAGAAGGAAAAGttgccaaaggaaatgaaataagtaTTCATTTTGAGAAAAGCAGTTATTCGTAGATTATGAAATGCTGTTAGCTATCTTTCAATAATCACACTATTAAgaaacaattttattattatgGATTCAagctttcaaaacattttttctttcttg-attagCTAATAATCTCCCTGTT--ATAGATAAAGGTATATAATTAG-TAATCAGCACTTCTAATCAAATTATGGGTTTGCAGTTATATTGGTTTGataaggaaaaagcaaagaaaat-attattcagAGTTGTCTAATGA-AGGCTTATTTTGAGATACATTTATTCTGTACACAATCACTGGTCTAATTTGAAGAATTAGAAGTTTACTTCTAAAGGATGGAATAAAGCTAACAATCTCTGCTCAGAAATT---------------ATACTTATGTAAAGTACAAGTTTTCAAAGGAACTTTAGTAAAAAGTTGAAGTGATAATCA--------------------------------------------------------------TTTTGAGAAGTGTTCTCAAAAACTGTGATGACAAAGTATTCTCACTCCTTGgctattcttttcatttattt-------ttacaattaaagACTCAGCTAGACAAA----AAGTGATATAACTTTTGTGAGCAGAATATGAAAGCATCTTCAGATTGCTGTTCAGCTTTACTTCGGGATCTCTTCAGTCCCCTAGAAGAAGAGGTGAAACAAGGAATTTATTCTAAAGCAGGGGGCTACCATCTCCTTATTCAGAAGGTATAAGGCCTGAAGAAAAAGTCCTATGAGGAACCCAAGAAGGGGGTACAGGTAAGCA

a score=18214
s chr3           142661378 2137 + 160039680 ATCCTGTTTTTCACTCCATCTAGGTTGTAGTCAAAAAGAAAAAGAGTTAAATCTGTCTCAGCTCTGTATCCGTAAATTCTTCCCAACTAAGAAATGCTTTGTCTTTGAGCGCCCAGCACCCGGGAAGAAGATTGGCCAGCTGGAATCACTACAGGATAAAGACCTGGACTCTGACTTCGTGAAACAAGTGGCAGAGTTCTCTTCCTATGTTTTCAGGTCTTCCAAGATTAAAAAAATTCCAGGAGACCTCAAGGTCAATGGACCGCGTAAGT-CCTAT---GGCAGACTCTTTG-CTCACTGTATCATGAGACAGCAATGACCTACGTCAACTTTGAAGA--AATGTTAAT--------------CTATCACCACT-------------GCACTGCTAAACTGT------AGATGAAACCAGCACTTATAATCAATTTGTCTAT-----CAGATTTTCTTGTTGTCAAAAGAGAAAAGGAAACAAAAGAAAGTTAAAAAAAATGTTTTAAC---------TCAACTG--------------------------GGCACCATGGACTTAAG----------TAGACCAATAAGAT----AATCACTAAACAAGTATA---------GCTCTTAAATTTTAAAGTAAGTCCAATATAG-TGTACATG-------GGGCTGCTCATTGTCAAGTTACCACACACA---GAATGTTCTCTTAGGAATGCTAATTATTCTAATCAAACTAACAGAGAGTCTTTGA---------CCATGATTTGTTCCCAAATGGGAGTGATATTTACTATGCACAGTGTTGGCGAT-----GCAGAG--------AGCCATGAAGGAG-------GTATGG---------------------AGCCTGTTCTCGT--------AGTGCCTATGT-----------------TAAAATGAATGCAA-ACATTCCGTAGACAC----------------------------------------GGGCCCATGAAATCTCCATCCAGCAttcttagcctttagggttgcaggcacctcatgagaggatctt-----gctaagag----gaaagtc----------------------taattctat-------cagtgt-----------gagacagaggctgggatgcttcagtttgtcattctttcaaacgat-------------------------------gctaaggacactgatgctctacaacatcatatctagtgactggcaTATCTAGAATTTCACAG-----AATAGACTTGTCTTCATCCATCTGTTGCAAATATTGTTACCTGTTTCCTGTTTATAGGACTAAAGAATTTGGTGACAACCTATGTGAACACCATCAGCAATGGGTCTCTGCCCTGCATGGAGAGTGCTGTCCTGGCTCTGTCAGAAACAGAGAACTCAGCAGCAGTGCGAAAGGCCATTGCCCACTATGACCAGCAGATGAGCCAGAGTCTGAAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACAGGAGCAGTGAGAAAGAAGCCATCAAGATTTTCATGGAAAATTCCTTCAAAGATGTTGACCAAGTGTTCCTAACAAAATTAGAGGTAATT--------------------------TTTTCCCTCAAGTTTCTGGAATGTAGAT-TTTTAAAAGCAAGTCAAATGGGAGTTGTGATTAGGCAACTGCGACT---AGATTTTGAAGTAGTAA-------CAGATAATT--ATTAATAATCACAAT---------AAATAAAAATGAATTGCAATACACTCAAAACTTTGCAACATTA-CTCCTGTCATGAATAAGGTAGTGATAtccc-ccttcaatgaatta-atgacagagagccaattagtgtatctgatcatattgcatgccca---gtgtcagcaa-----------actgattcaatattcaagccaa---------------taacaaattcacattgagccatgtttagt-------ccttgtgtcatct-------ttaACCCAGTCTGA---------AAAAGTAGTTTAACATCTAAAGGTGAAAATCT--------------CTGC--------TCTGAACTTCACTGTCAAGGAGCAAGGAT------GACGTCAGTAAAAGC-----TGGCAAGAGAGGAAGAGATCTAGTTACAGTCAGCACTCATA---------tatttttcttt--gttttgcatttgtgtttgttttgtgttttgt----------gtttgttttactttTAAGGAATTCTCCCCAAAATTCTAAACTCTGGCTTTCTTTTTCTTATTATTTTTTCTTCATGtatttattattattatta---------------------ttaaaGACGGAATTAGAAAGAAGGCAAGCAAAGGGAATTCTGTAAGAAGAATCAAGAGGCATCCTCAGATCGCTGTTCAGTTCTGCTTCGGGATATTTTTGGTCCACTAGAAGAAGACTTGAAGCAGGGTGTTTTTTACAAACCAACGGGTTGCTGTCTTTTCAGCCAGAAGATACAGGGGTTGAAGAGAAAG---TATGAGGAACCTGGGAAGGG--CGCAGGTA
s HiC_scaffold_1  96742006 2562 + 233722169 attctatttttctttc--ttcaggtaGCAATGAGAGAATTCAGCATTTCAATTTGCCCCGTCTGTGTATAAGGAAGTTCTTTCCAAGAAAGAAATGCTTTATCTTTGAGTCACCGGCTCACAAAAAGCAGCTTTCCCAGCTTGAAATGCTGCATGATGATGAGCTATATCCTGAGTTTGTGCAACAAGTGGCAGAATTCTGTTCCTACATCTTCAACCACTCTGCAGCCAAGACTCTTCCAGGAGGCATCAAGGTCGATGGACCTCGTGAGTGTCTATTTAAGTAGTTCCTTCAACTCAACAGAAAGT---ATAAGAAACACATGAGTCTCCTTGTAGCACCAGTGTTAACAAGTGCATAGATAACTATAACCATGAAAATCATATGGGGcacatttaaaacattataatagaTGTGAAATATATTTCTAGTAATCTTAGTCATGCCTccaaaattacataaaacaagaagagaaaggaaggaaagataggGTTAAAAGA---GTTTTAATCATCCACTTTCCACTGCTGAAATGTACTAATCCTCACTGATTGGCACCATTTGTCTAAGAAATCTATTGTAGCCTTATTATGTGTCAAAGCCTTTGACAGGCACAAGATGGCGTGTTCTTGG----TAGAAGGAGTACTGTGTAGATACAAATGTTGAACCAAGGTGTTAATTGTCTGgatttctaaaatatatgaacGCTGGCTTCATGGTCTAGTTTATTCTAA-----------GAAAGCTCTTGAGTCAGAATTCTATAAATAATTGCTACATTATAGAGGGGAATAGAGTACAAGTTGACAGAGAATGAAAGCAGAGGAAATTCCAGGCAAGAATAAGCAAAATGATGTGGTCAAAAATTGCTTaatttgacattttgttttttttttaaagaagaggcTATATCTCAACCagttttatcataaaataaaagaggtaaattccaaagaaaatggaaactgaggAAGAGGGAAAGGGCAGATTAAAGAGGTGAGGCCTATAGCATTCCAATCAAGTGTG--TGACTTTTA----CATAACCATCTCCTTAGGTGTTCGTAGACAGTTATGAAATGTGAAAGTCACATATATCTTAAGATTTAccgtatttttatttaaatacagttttttttcccaaagaaggATAGACTTTGGTTCTAAATTATATAGTTTTCCTAAAGAATTTATGTGGGCCCTTTGAATACTTCACAGAAGGGTGAAAAATTTCAGGCACTGAATCATTAAGTCTA--------CATTTTCAGCATTACTCAGTGGAACATAGAct-------atttctctaaaaataataTAAGCATCTTTTATTTCTATGAAGGTCTACAGAGCCTGGCACAGACCTATGTCAATGCCATCAACAATGGGGATCTGCCCTGCATGGAGAATTCAGTCCTAGCATTGGTGCAGACAGAGAACTTAGCTGCAGTGCAGAAGGCCTTGGCCCACTATGACCAGCAGATGGGCCAGAAGGTTCAGCTGCCCACAGACACCCTCCAGGAGCTGCTGGACCTGCACAGGGCCTGTGAGAGGGAGGCCTTGGAAATATTCACAAAGTACTCTTTCAAGgatgaggaccaaagcttccaGAAGGAATTACAGGTAATtaatattattgttgtttgtctaATACATTGGCTTTAGGGTTAAtagaagacaaatattttctatGAATGTTAAAACAGGATT-TAATTAAGAAAA-GCAAATGTCAGACTTGAACATAATGATGAACCTCATGTGATTCACTTGATGATGCTACTTTCAGTCTAAAATCAAAAAAGCATGTAATACTGTAGGCAGTTTAGACTTTTAGGTTTTCACATAAACAC-------ATATCTCATCTTCAACATATTACATACCCATGGACGAA--AGTTGAATTGATTTTATTGCTTTCAAAATTGTATTAACAAGGCATTACCTTACTGTTTTATTAGTGAGACAAAATTGGAATTAGTGTCTACTAAAATACGATGTATTCAGGATGAATAAAATTATCCAATATCATTCCAGCTAATTATCCAAATCTGCCTTCTCACTAAAggtagaaaaaca--taaaaattaaaatcttgtaAAACAGTTTCTTGCATTTAAAGTCTAGGCATCAGGTTCAGAGA-CAGGGGTTCATAAGATGACATCCAAAGCACAGATAACAAGAAA--AAGTGGTTTTAGTACATGTCTAACCCAAaagtaaatgttatttttcatcaAGTGTCATTCTCAGGACTTTTCAAGGTTTGGTGAAAAAGATAGTCTAGTTTACATTCCACTAAATTTCTATAAAAGAtta---------tatattcctttaaaaaCCTCACCTGGAGGTACTGAATTTTGCTAACATCTCTGTGGGATTTTGTCCCTTTGAAGACACTTCTAGATGCAAAGCTGGAA----GACATTTGTGAGCGGAACAAGGCAGCCTCTTCAGAACACTGCTCAACTTTACTTCAGATTATTTTTGGTCCGCTGGAAGAAGAAGTGAGGCAGGGGATTTATTTTAAACCAGGAGGCCATAATCTCTTCCTTCAAAAAATGGAAGAGTTGAAGGCAAATTACTATCAACAGCCAAGGAAAGGACTACAGGTA

a score=28145
s chr3           142661964 1865 + 160039680 ACACAGAATGTTCTCTTAGG-AATGCTAATTATTCTA--ATCAAACTAACAGAGAGTCTTTGACCATGATT---------TGTTCCCAAATGGGAGTGAT-----ATTTACTATGCACAGTGTTGGCGATGCAGAGAGCCATGAAGGAGGTATGGAGCCTGTTCTCGTAGTGCCTAT-GTTAAAATGAATGCAAACATTCCGTAGACACGGGCCCATGAAATCTCCATCCAGCAttcttagcctttagggttgcaggc----acctcatgagaggatcttgct-aagaggaaagtctaattctatcagtgtgagacagaggctgggatgcttcagtttgtcattctttcaaac--------gatgctaaggacactgatgctctacaacatcatatctagtgactggcaTATCTAGAATTTCACAG--AATAGACTTGTCTTCATCCATCTGTTGCAA---ATATTGTTACCTGTTTCCTGTTTATAGGACTAAAGAATTTGGTGACAACCTATGTGAACACCATCAGCAATGGGTCTCTGCCCTGCATGGAGAGTGCTGTCCTGGCTCTGTCAGAAACAGAGAACTCAGCAGCAGTGCGAAAGGCCATTGCCCACTATGACCAGCAGATGAGCCAGAGTCTGAAGCTGCCCACAGAGACCCTCCAGGAGCTGCTGGACCTGCACAGGAGCAGTGAGAAAGAAGCCATCAAGATTTTCATGGAAAATTCCTTCAAAGATGTTGACCAAGTGTTCCT---AACAAAATTAGAGGTAATTTTTTCCCTCAAGTTTCT-GGAATGTAGATTTTTAAAAGCAAG-TCAAATGGGAGTTG--TGATTAGGC----------AACTGCGACTAGATTTTGAAGTAGTAACAGATAATTATTAATAATCACAATAAATAAAAATGAATTGCAATACACTCAAAACTTTGCAACATTACTCCTGTCATGAATAAGGTAGTGATAtcccccttcaatgaattaatgaca----gagagccaattagtgtatctgatcatattgcatgcccagtgtcagcaaactgattcaatattcaagccaataacaaa--------ttcacattgagccatgtttagtccttgtgtcatctttaACCCAGTCTGAAAAAGTAG--TTTAACATCTAAAGGTG----------------------------------------------------------------------------------------------------------AAAATCTCTGCTCTGAACTTCACTGTCAAGGAGCAAGGATGACGTCAGTAAAAGCTGGCAAGAGAGGAAGAGATCTAGTTACAGTCAGCACTCATAtatttttctttgttttgcatt-tgtgtttgttttgtgttttgtgtttgttttactttTAAGGAATTCTCCCCAAAATTCTAAACTCTGGCTTTC--TTTTTCTTATTATTTTTTCTTCATGtatttattattattattattaaaGACGGAATTAGAAAGAAGGCAAGCAAAGGGAATTCTGTAAGAAGAATCAAGAGGCATCCTCAGATCGCTGTTCAGTTCTGCTTCGGGATATTTTTGGTCCACTAGAAGAAGACTTGAAGCAGGGTGTTTTTTACAAACCAACGGGTTGCTGTCTTTTCAGCCAGAAGATACAGGGGTTGAAGAGAAAGTATGAGGAACCTGGGAAGGGCGCAGGTAACCAAGGTAACCAAGGT---TCCGCATGCCCTGGGAAGTTTCT---TAC---CATCAGGCTGCAGTGTCCCCAGG--CATCACTGGGGAAC----------GCCAGCTTA-----TGCTGTTCGTGTATCACATACCTGAAGGTCTTCATACTGGATATTTCCTGCTCACCCATCAGAGACAGTCACTCACTTAACAGTCAGACAGTCACTCGCTTAACAACTGAGCTCAAACTGACCACCTTAGCCACCAGTGGGACTGTCACCCTCTGTTTCAGCTAGACTCTT------TATGTTGCAAAGAACTCAATGGCAACCCCTTAAACAAAACTTATAATTCATCAG
s HiC_scaffold_1 128776907 1910 + 233722169 ACACATAAAGTTCTCTTGGATAACACTGTCTAGTCTATTATCCAAATGGTAGTA--TCATTGATTGTGATTGCATCTCTTCTTTCATAAAT---AGTGATTAAAGGCTTCTTTTGAACAGTGATG-------------------ATGAGATACAGTCTTGCTCCTAATGGTACTTGTTATTaaagtacatgaaaatatttaccaGA----ACTCCGTGA--TTTAGAACCAGGATTCTTGATCTTTGT-----CAGGCGTATACATCACGTGCACATACTGCTGAACTGGAAGAGCTAATTCAATAAATCTGACACAGAGG---------TCAAACTTGCatttctagcaaattgcagagtGATGCTGAGAACATTGATGCTTtgagaaaa---atatgatgaatgacATGCT--GAATTACACAGGTAAGAAGCTTTTCTTTAT-----TGTTATAACATGCATTATCCCTTGCTCTCTATGTGTAGGTCTAGAGAGCCTGGTGCTGAGCTGTGTCAGTGCCATCAGCAGTGGGGATCTGCCCTGCATACAGAACGCAGTCCTGGCCTTGGCC-AGAGAGCGACCTCAGCTGCAGTGC---AGGCCTTGGTCCACTATGACCAGAAGCCAGGCCAGAGGGTGCAGCTGCCAACAGACACCCTGCAGGAGTAGCTGGACCTACAAAGGGCCTGTGAGAGGGAAACCATCAAGATCTTCATCAGAAATCCCTTGAAA---------------TTCCTTCAAAAGGATCTAGTGgtaatttttt--cttatgtttctctGGATTTGGATTTCTAAAAGCAAGATCTATGAGGAAATGAATAATTACATTGTAAGAATaaattattgcttgatttcagcATTGTGACAGGTACCTATGAATAGCCATCTTAACAAGAAAC--ATTATTGTGGACTCAAAGGTTTGAAGTACT-TTTTTCTCATGATTAAATTAATCATATCCCCTTTAATGTAATTTAATACATTATAATTAATAATCAGTACTTCATATCAAATTACATGCCCAGCATTGTCAGAATGATGTGCTATCAAAGCTAAAAGCACAGAGGGAGGTTTATGTTGAGCCAGATTTGTTCTATGTGCAATCATCAGATCCATCTGAAAAGGTAAATATTTACATCTTAAGGTGCATCATGTTAGCAGTTtaggctgggggtatagctcagtgatagaccCCAGAATGGGCAAGGTCCTAgctcaatcttcagtaccaccaaaaataaagaataaaaatccaAATCTCTGCTCTGAACTTCAGCtccacagagacag---------------agatggcagTAGAAAGAAAGATCAGATGGAAG----------GATATGGCCCTTGGAGGTGCCCTGTCTGTTTTTCTAGGGTGTCATAGAT-TCTTCCTCAAAATGAGT--TTCCAGAAATTCTGAGTTAAAGCTAACATCTTTTCCCATTATTCT-----------TTTACTATCTTTG-TATGAAAGGCCCAGCtagaaaaaaagatggaa----gatTTTTATAAtcagattttggaaacagcttCAAATCATTGCTCAGCTTTATTTCAAGATATTTGCAGTActgtagaagaagaaatgaaataaggCATTTATTCTAAGCCAGGAGGCTACATTTTATT---TCAGAGGGCAGAAGACCTGGAACAGTACTGCCAGGAA---GTGAGGGGC--------CACAGGTAACCAACGTTTATCTGTGCATTCTGGAAAGCTGCTGGGTGCATGCTTTAAACACCAATGTGACCAAGGCAATTGCTCAGGGATGTCCCTCACAGTCGTCTTAACAGCCACACTTTCAATAACATTTACATGGAGTCTGTCCCGCTACATATGTCCCAGGTACTCATCAGAG---GTCACTCAActaacaaatacaaattaaattg--------------tCAGAATAACCA---TAG-----AAAGTTACTGTTACCCAATGTAATA-CTGTGTTTTTCCACTGTAAGAGGCAGAAAA-TCAGTGATTGTCccctaaataaaaatgttaattcatCAG

a score=8883
s chr3           142663221 298 + 160039680 TTCTCCCCAAAATTCTAAACTCTGGCT---TTCTTTTTCTTATTATTTTTTCTTCATGtatttattattattattattaaaGACGGAATTAGAAAGAAGGCAAGCAAAGGGAATTCTGTAAGAAGAATCAAGAGGCATCCTCAGATCGCTGTTCAGTTCTGCTTCGGGATATTTTTGGTCCACTAGAAGAAGACTTGAAGCAGGGTGTTTTTTACAAACCAACGGGTTGCTGTCTTTTCAGCCAGAAGATACAGGGGTTGAAGAGAAAG---TATGAGGAACCTGGGAAGGG--CGCAGGTAACCA
s HiC_scaffold_1  96789259 294 + 233722169 TTCACTCAGAAACTCTGACCACAAACTATTCTCACTGCcttgctattgttttt------atttgttat-atTCATATTAAAGGCTCAGCTGcaaaaaaatgatataat-----ttttgtGAACTGAATATGAAAGCATCTTCAGATCGTTGTTCAGCTTTGCTTCAGGATCTTTTCAGTCCCTTAGAAGAAGAGGTGAAACAAGGAATTTACTCTAACCTGGGAGGCTACCATTTTCTTATTCAGAAGGTACAAGACCTGAAGAAAAAGTACTATGAGGAACCCAAGCAGGGGATACAGGTAAGCA

a score=8110
s chr3           142706628 249 + 160039680 GATCTTGCAATGGTGCAGCGAACGCTCATTGACTCCTCTTTC-AATGTCTCTTTTCTC---TAGCATGCTTTTGGCCCAGAGGAGACTCATCTCCCTTGGCTGCAGATCAAAGCCCATAAAGACAATTTACTCTTCTTCGAAAGTCCTCGGACTCTGCACTTCTGCCGTAGGTATTGCTTGT----CACAGACCCAATATTGCATGTATTTTCTCACGTTGGTTAAAAATTATGCAATTTCCCAGGGACTTTTAGTA
s HiC_scaffold_1 128792343 252 + 233722169 GATCTGATAGTGAAACAATGGTTGTATATTTACTCCCTTTCctgatttttcttctctcctgtAGCATGTTTTTGGCCCCGAGGAGACTCTGCTCCCTTGGTAGTGGAGCAAAATTTCTAAAGACAATTCG---TTCTTCAAAATTCCTGGGATGCTCTACTTATGGTGTAGGTATTGCTCATGACATACAGACAAATCACGGTATATTTCCTGCAACTTcaaactaaaa--atgtaatttttcaggTACTTTTTATA

a score=6414
s chr3           142715918 275 + 160039680 tcctagagataactctcccaattgctatttgttcttactttcttgagaaagtt--tactgacacGG---CAGAGCACACGGTATTCTTATGATCTAAGGGCATACAAGTGCAGGAA-----GGTAGGAACAAAATAATGGAAAAGACTGAATTTAACAGGAGCACATAGAAGTACCT-GACT----GGATGTAGGGAGGGCAGGAAACAAAGTCTAACTTGAATATCAAAGGTGGCAGATGGAACCAGAACTGGCCAAATGCAGGGGCAGTGCTGTTTGGTGAGGACCAG
s HiC_scaffold_1 128800026 283 + 233722169 tccttaaaataaatctctc--ctcccattggttctctttctctggagaaccctacTAGTGACTCGTGTCAATAAAACAAGCTATTTTCACACGCTCAGGATACATAGAAATAAAAGCTTTTGCTCTATATGAAACCGTAGAAAGTGCTGCATTTAATGAGACCACATAGAAGGACCTTGATTTGGGGAATGAGAAGATTGCAGGAAATGACATCAAACTCGAGAATTGAAGGTGACAGGTGAGACCCACATTAGCCAAGTGCAAGGACAAGGC-----GGTGAGGACCAG

a score=28679
s chr3           142716980 1659 + 160039680 TGCTGACGTCTTTATAATAAAAATGAATCTGC--TTTGCATATCTGGTCCCTTGCTGAGTAAATCATTATGATCTCACCATTGTCTCGGAAAGAGGGAAAGGCCTGTGTTAA--AAATCTCTTTCTCTGGTCTGCTGGGTCTTTTGAGTTTTATCATCATATTCTCTAGAGTAGCCTTATGTTCAGGTGGGGCTTCATCAAAATGCTGTTCCTGAAG-TGTGTTAGCCTCCAGAGAATTTGCTTGTGATTTTTTTTCTGTGGAGTTTCAAAGATTACCAACAGGAGGC-TGAGAAAGCTATTTCTTT-GGTATTGTTATTGGAAATAGAAGGAGAACAATGGTCTATTTAATAACCATTATCATTATCTTTTTTCCAGATTGAATTAAAATTGCTTTAATATTCTATTATAAAATTCCTTGCAAAATTGCTGTCAATCACTTTTTCTTATTTCCACCAGCCCGCTAACAATGAACTTAAAGCTAATTCAGTATTTCagagagagagaaagagagagagagagagagagTCAAAATGCAGCTTTTGAATCGAAAGAACTGAAATCTTATATATGGTATGATTACTATAGCTTCTAGCATTTTCCTACTCCGGGCTTAGCTTACTTGCTGGTGTGAGTATACCTGGTGGGAATGACGACTATACTTGTAGCAGCAA--CTTCCAGCCATATTTGTAGAAAGCCTCAGTATGTGAAAGTCTGTAGAAGACAAG-----TAAGAATGTGCTGTAGAGACAGATCGTGGG-----------------CTTGTTT---CAGACGG-------TTTTATGAACGTAC-CAGATGTGAAAAGCTTT-----CTCCATCTTCATGGTACCTCGACTTTGTTATTTCAATAAGTGGAATTCATAAGGTTtcatagggctgttatgaatgttaacaaaattaattatgtaaagaacacagaacagtgctgggcacataagcatcgcttcctaatgtcacctatcattATCTGTAACCCATTATGAAGGATTTTTAAAACCATTTATT----------------------------------------------------------------------------------------------GAGTTC-------------------------------------------------------------------------------------------TTCCTGTAGGATGTAGGAGGGACTTCCGTATAGAATTCTAGATGCATAATACGTTCCGCAAGCTTCGTATGTAGCATAGTTCAAGAT-TCTCTCGACGCTTTTTCCTCTGATGTTATTATTGAGCTCTTGAGTGTGGTTCATGCCGTTAGATTGATTAGCTCTTCCTGCTGGGATAGTCTTGTCCTCAGCTGAGAGTGTACAGATGTGAGCTGCACATGGGAAAGTATTCTGAGGAGCAGTAGGGACAGGTTGGACAAGTCTGCAGGATGCTGCATGGGGCTCTAAAACTTCCTCTCATGCTA-----GCGTTTACAGC-CTAACAGGAAAAGGGAGAGTGGCCCATTGTTTACTGACCTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAATTTTGACCAAATAATTA--AAAGATA-------ACTTTATATCTTTCAGAAAATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTGGTGAGTGTCTT-TGGCAGAGGGTATGTGGTA-AAGCTTCCTGTGC-------GCCCTTAAGTT--GGATTCTTAACTTCGCCTGCAGTTCAATAAAGAAGCC----ATTTAATTCA-CCATTAA-----AATTAAACAGAGAAAGCTAGCCATACATACCTATGCCACTTTACTCATTTAGCAAGTGTACCCCTCTGGGCTAGCACTGAATATACAGTAGAGAAAA
s HiC_scaffold_1 128800968 1981 + 233722169 TGCTGGCGTTTTAACACC-----TGAATCTGCACTTTGTGTGTGTGGTCCAT-ACTGAATAAATCACAAAGCTCTCAGCATTGTTTCAGAGATAGCAAGCAGCATTTGTCAATGgaatctttttctctctttctctgtcagtTTTTAATTGT-------TAATCTCTAGAATAGTGTCGTGTTCAGGTGGGAATT-ATGGTGATGCTATGCCAGAAGGCACGTTAACCCCCAAAGAATacatatgtgatttatttc--actgagtttcaaagatgaaaaatagagGACActaaaaagctattttttttgGTCCCATTATTGAGAATAGA-TGAGAACAATGGT-GATTTAATAACTATTATCATTATCTTCCTCCCAGATTGAATTAAAAttgctttaatattctattatgaatttttttgcaaaaatgctatcaatca-tttttcttatttccacCAGCCTGTTAATAATGAACTCAAAACTAATTCAGTACTTTTGAGAGATAGGA---------------------CATAAT-TAATTTTAGAACCTGAAGAACTAAAGT--TGTATGCCGCATGATAATTATAACTTCTGACATTTTTCTACCACAGCTTTAGCTTGCTTG---GTATGAATAGACCCAACCTAAAT-------ATACTTTGAAGAGATAGTTTTCTGGTCATATTTTTAGAAAGTCTTGTTTTATAAGAGA--GCAGATGACCATAGTTCCATGTATGGGTTTTGCAGTCAGATGGTGGATCTGAATCCTGGGTAAACCTGTTTGGCTTGAAGGCTACTACTTTTATGAATTTGGGCAGATGCAAAAAGTTCTATGGTCTTAATCCTCCCTATGCCTCACTTTTTGTTCATAGATCTGAGTGGCTAATAA-------CAGAATTATCATGTACATTAGCTAAGGAAATTATATGAAACACATGGAACAGTGCCTGGTATACAACCACTACTGGGTCTCATTAACTACTATTACTTGAAACCCCTTAGTGAGTAGTTTTTAAACCATTTGTTACCAGGCATGTGCTGCACAGCTGTGATGTCTGCAATTGggaagctgacacaggaggatcgctgagagcACAAGGCCAGTCtagggctacttagtgagttcaaggccagcctgaacttgatagcaaagaccctatctcaaaaaaaaaatttttttttttttttacaaataaacaTAGAAACCATTTGTTGAGTTCTTGTATACCATGTGAGGAACTTTTTTGTGAAACTCAtagtatattttactttcttcag-----------aGCATAGCTCAAGATATTTTTAAACTGGCTTTTTAAAAGTAGTATTCCTGTTCACCTTAGTACATTGCAAGCCTTTTAAATGACT-------------------GTCTT----TAAACTAGAGGAGAACA---------TGCACAAAAATCATTCCTTTGAACAGCTGCCGAGAGAGG---GACTCTtcctcatatttttgttttggacTCTAGAATTCGCCCCTGCGGTTCTTATGCCTGTACAGTGATGATAGGAAAGGGAAGAATGACCCATGACTTACTGACCtttcatattttgtgttttgttttttattatttaaagatagtaaaatccaacaaaacaaaacagaacaaagccaagcaaaacaaagcagcaaaattggtacagaacttcaaaggcaggatactaggaaaacagcaGCTACCATGGTATATGTTGTTACCTTCACAAGCCTTTCAAATTTTGattaaagaattattaaaaatttttcaatacTTAACGTTTTTCAGAAAATGTCTTCTAAATTGAAAAATGCAAAACGCATCGAAGGACTTGACAGCAGTGTATGGTGAGTCTCTTAAAACACTAATAATTTGGTGTAAACTTCCTCTATAGTTTTAGTTCCTTAGTTGGGGATTTTTAGCATCATCTCTAGTCCAAAAATAAAGCCACTTATCTAATTTATCCATTAAATGATAGTGGAAGGAAGGCAGCTGCCCATACACTGATTTATGAATTTCCCTGGTCAGCCA------TGCTCTGTGCTGCAAACGgacacatggcagaggaaa

a score=16258
s chr3           142720237 544 + 160039680 TTTTTGTTGGGAACCCAT-----------------------TGGGTTTCGATTCTATGATGAGAGCATATTACACTAAAA-CTAAGTCTGTAATTATAGTACTCCCTAAT--------CTTTGTGGTT-GTTTTGTTTTGCTTT-----GTTTT----------------TAATC--AGGGTTGAATTTACTAAGTTGGCTGCGGATCCTTCTGTGGTGAACCTTGGACAAGGCTTTCCAGATATATCCCCTCCTTCATACGTAAAAGAAGAGTTATCAAAGGCTGCATTTATTGATAACATGAATCAATACACAAGAGGCTTTGTGAGTCTATCAGGGCCATGTGG-------------GATACACCGATATGTCATGGGGGGGGGGGGGTTGTTTGTGTCTAAACTTAAAGGAAATTGACTTTC-TAGGATCAACTGTCTTAACCTGGAAACTCTGGAGCCCATGGCTCTCACCTCTG----------AGGATGAGTCTTCTCTAATTTCCAGGAATTTTTCAGTCCCGTTTTGGCTGTTCATTGACTACTGTTCCAAAATGAGCTCTCAGGACATCAAGGAAAGGGAAAATATTCTCTCAAAGCATCTTTGCTATCTCATT
s HiC_scaffold_1 128803288 593 + 233722169 TTTTTATTGGGAACTCTTAATTTGTAAGGccaaattatttctagttttcagGTCTGTGGTAAGACCATGTGACATAAAAAGCAAACTTTGTAAGTATACTACTCATCAATACCAATATTtttgaggtttgttttgttttgttttttggtgttttatgGCTTTTTTCCCCCTAACCTTAGGACTGAATTTACCAAGTTGGCTGCAGATCCTTCTGTGGTGAATCTTGGCCAAGGTCTTCCAGATATATCGCCTCCAACATACGTAAAAGAAGAATTATCAAAGATTGCGTTAGTAGATAACCTGAATCAGTACACGCGGGGCTTCGTAAGTATATCAGGAACATAAGGCGCTTGAGCTTTAGAGTTCCTGCTGCGTTGTGTGAA---------TGTGTGTTTCTG--------------TGACTTCCGTAGAGTCAGCTGTCGCAGCCTGATGAC-------CACAGGACTCTCCCCGCTGCCCTGTCTCAAGGACAAGCCTTTCACCACCTTCAACCCATCAGCAGTTCTGTTTTCGTCCTTACTTTACTGTTGTT-CAGAATGTGATCCCAGGGCAACCAGGAAGGCAGTGAGCCTCTTGGAGGGTGTCTTTTCTGTCTCATT

a score=15646
s chr3           142722998 550 + 160039680 GGATAATACTAGGTATTAAAACCAAATTTGAAACTAGTTACAT----------TACTTCAAAGAAGTAGTTTTCATAATGAATTTCAAAGTGGGATTTTATTTTGCCCTAATCTTTAATACAACAGGGTCATCCAGCACTTGTGAAAGCTCTGTCCTGCTTATATGGAAAGATTTATCAACGTCAAATTGATCCAAACGAAGAAATCCTTGTGGCCGTGGGGGCATATGGATCTCTCTTTAACTCCATCCAAGGATTGGTGGACCCAGGAGATGAAGTAAGTGCATGAACATTGTCATGACCCCCCGTGCTTCCGTCTGTCCCAT----------GTTAGAAACAGTCC--CTCATCTTGTGCCTTTTTCACTTTCAATCTATTTTGAAGCCATGTGATGATGGTGCGGTAAAGCTAGCTGGCCTTAAACATAGAGTGGGTTAAACCACCATGTAACCATCGCACACACAAAGACGTTGCACCTTTCCAGCATCCAGACTTGGGTGCTTCCCGGGGTGTGTTCTCCCAGCGTTAGTCACTGCCGTGTATCCTTCCGCTCAGCTCCTTCCCAT
s HiC_scaffold_1 128806747 539 + 233722169 GGATAATTACCAGtgtgaaatacaaatttttaaa-agtcatacattTTAGAGCTACCTCAAAGAAACTGGTTCTGTAATCAAATTCAA--Ttgg--tttattt---cttattttttaatccaaCAGGGTCATCCATCACTTGTGAAAGCCCTGTCCTGCTTGTATGAAAAATTTTATCCAAAGAAAATCGACCCAAATAAGGAAATCGTTGTGACAGTAGGAGCATATGGATCTCTTTATAATGTCATTCAAGGACTGGTTGATGAAGGAGATGAAGTAAGCACGTTAACAGTGTTATAA-------TGTCTGTGTTAATCCCATCACTCATCCCATCTGTgactattctatttattttgtattcttttta-tttcaaagtatattaaaaat-tttgatgCATATACCATAAAGTTAACAAATCTGAAACATACAGCTGAATAAAACCCCATGTAACTATAACCCAGATAAA----TTACA--TTTCCGGCATCCGGA-GAGGCTGCTTT--------TGCTTTCCCCTC-TTAgtctgtgctctctctctctctcttacgcTGTTTTCCAT

a score=37272
s chr3           142724866 1862 + 160039680 ATACCACACACCTGGGGGTATGCTATGGGCATCACACAAGAACAA--------------------CAGCATCCACTCTGATCCCCTGATCCCTAC----------ATGTTTACTCTCAAGACACTGTTTTTACGTTAGTACTCCATTCTACAAAGTAG---AGAGTCATTCC-CAAAATCTGACCTTCATCACTGTCTGATATATCAAGTATATCCTACCTTGTAGTTTGTAACTTGAAATCCaaaaaaagaaaaataagaaaaagaaaaagaaaaGTCCTTACTGATTTGGGTTAAAACATCTGTTTGAGAACATGATGAGTAGCCTAGGCCTCAGATAAACCTGTGTGTGAACCTGTAATATGTGACAGCTTGGAATGTCCTCACTGTAAGTCCATCTGTAGGTTTTTCTGAAAGACTAAGAACTCCAGCTTTGACTCGCTGGGTGTCTTTATATCCTTCCGCACTAAGGCATTAGCTCCACAAAGACCAGACCTGTCTTTCCATTGCTGTATTCCATC-----------------------ACTTGCACAGTGCCTCAGGGAAGAATTGCTGGCTGATTTCCTGTGTTCTTGTTTGCTTTTATCTCAGGTGATAATTATGGTGCCTTTTTACGACTGTTATGAGCCCATGGTGAGAATGGCCGGAGCAGTGCCTGTGTTTATTCCCCTGAGATCTGTAAGTCCCCTGTCATCTATGGGCTTGAAGAATGTCGTAAAATATCAATTACTTTGTCACTAAAGACATAGCTAAGTCTTTTGAAAATAACACAGTAACTAAGGTGATTCATAGACTCCTCCATCAGTCTTGGGCTGCCTCCTGTTGCCCATAGTTACAGCTGGCTTGTGGGAAAGAGCAACAGCTGTTTTGCTGAAGGGGTTCACTGTTTCCTTTAACCAGTGTGTACATAAGGCCTAGGTCCTCTGGGTTCTCAAGGTTGAATTAGAGCCTAATtgtgtgtgtgtttgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCTTTGTTAATCATTTATTCGATTACCTATGTCAGGTCTGTCTTAACTCTTCG---TTTTCC------TTTATTAGGTTGTCTGTAAGACAGCAAACATGAATTAGTTTGTTCAAATCACATCTT-ATTCTTCATGCCTAGAAACCTACTGACGGGATGAAGTGGACTAGCTCTGACTGGACATTCGATCCTCGAGAACTGGAAAGTAAATTCAGTTCCAAAACGAAAGCCATAATATTAAATACTCCACACAACCCCCTCGGCAAGGTGAGCGAGCCTCTCTGCCCACACCGGCTGGGAGTCGCTGCTCTCTCATGTGTAGAGTAACA--TGGCTGTGCCCTTTCTTTTCATGTGTGCAGGTGTATACCAGACAGGAGCTGCAAGTCATTGCTGACCTTTGCGTCAAGCACGACACTCTGTGCATCAGCGATGAGGTTTATGAATGGCTTGTCTATACTGGACATACGCACGTAAAAATAGGTACTGATTAC----AAGAGTCTCGAGTCTGAATGTCTTTGGTCACGTGTGGAACAACTGATTGGAAAGGATCCCAGGCCAGCTTTAAAATAGTCTCTGTGATGGGCATCTGTGCGACACT-TACAGGAAGCGTTTAGGTGGATCATGCTTG---AGGGATTAAAGTTCAGCTGGAGGGACAAATGTTCAAG---TGAGGAAAAGGACTTGAGATCGCATTACGAAGCCGGGACACCAGCAGAGTAGGTCTTGTGTCTG-----TCTTTGGCTTCCTAACAAGAATCCTGCTGTTCCTCGGTGCGTAGATCCTGCCTGGCTCAGGACTTTTTATGAAGAGGTTCATGATTGTTTGTGCTGAATGAGCTGCCAAA--------CAACAGCAAGGAATTGTAGAG-TGGCAAGCTATTGCTATTCTGTCCTCAG-TGGGATTTTGCCATTGCTA
s HiC_scaffold_1 128809991 1605 + 233722169 ATACAGGGCACCTGGAAGGCAACCGTGGGTATCAGACAAGAACAAAGGTCTCCTGGACTGTCTTCCTGCATTTACTCTTTGCTACAGAATGCTCCGAGGAGAATCATCTTCACTCTCAGGATAATGCTTGTTAATTAGGACCCCATGCCAGAGGCTGCTCCAGTCTCTTTCCGTACAGTCCTGCTCCTGTCACCGTCTAAAACATCA--TATAGTGTACATCCTACTTTCTAACTTTGGAT----------AAAAATAAG--------------------TTA-TGATTTTGGTTaaa-tgtctctttt----------------ctctttcccaaaataaatcttcctgtGCACATGTAAAATTTTACCATTTCAAGCAGATCTACTACG-GTCCATCCACAGATCT--ACAAAAGCCCAAGAATTCAGAC--------------------------------------------AGTTCCATGAAAACAAGAACTGATTTCTCACTGTGGCATCTCAACCTGGAGACCTCCTTGTACCTAGGAAGTGCCCAGTATTTGTGAAGTGAATTAATG-CTGATGTGCTGTGTTCTTGGTTGCTTT-ATTTCAGGTCATAATAATGGTGCCTTACTACGACTGCTATGAGCCCATGGTGCGAATGGCTGGAGCAACACCTGTTTTTATCCCCCTGAGACCCGTAAGTT-------------------------TGTC------CGTCAATTCGTATGCTGTTAGAA------------TTTGTGAAAATA-----------------------------------------------------------------------------------------------------------------------------TTAACAGATGTGAGCCTAGCACTTAGGTCATC----------------------------ACTGTACGCATGT-------------------------------------------------CATTTATTCCGTGACCCTTGctgtgtctttcttttgttttggattttttcccccttgttaatttgtttatttgtaaGCTAACAGATATGAATTAATTCCTTTAAATTCCATCTTCATTTTTCATGCTTAGAAATATGTTGCTGGAAAAAAATGGTCCAGTTCTGACTGGATATTAGATCCGCAAGAACTCGAAAGCAAATTTAATTCTAAAACCAAAGCCATCATACTGAATACTCCACACAACCCCCTTGGCAAGGTAAGTGAGTCTCTCTCTGTACGCAGGCTGTGACCTGTTGTCGGCTCATGTTCTGAGTAATAGTCAGCTGTGTTCTTTCTTTCAATCTGTGTAGGTGTATACGAAAGAAGAACTCCAACTCATTGCTGACCTTTGCATCAAATATGACGTACTCTGTATCAGCGACGAGGTTTATGAGTGGCTTGTGTACACCggaaataagcattttaaaataggTACTGATTATTACATAGGCTCACAAATGTAAGTGTATCTGTGCACAT-TGGAACAACTGATTAGAAGGGAAACCAAATCAGCTTTTAAGTGGTCTTTGTTATCCATGTGTGTGTGAGCCTGTAAGAGTAATATTTCAATGAATAATGCTTGTGTTGGGATTCATGAACAGCTTGAAAGACAAACAGTGCAGACTTAGGGAGAGAGATTTCAGCTcactctctgaaactgtgaagcCAGGGAGAT---TCTACTTACTGAGGTCTCCTTGACCTC--AGTAAGAATTCTGCTTTCCCTGGATACCT--ATAATACAGGGAGCCAAATTGTTCCTGAAGAGATCCTGGACTGTCTGTGCTGAGCAGATTGCTCAAATGCAAGGCAACGGGAAAAGATGACAGGGACAATAAGCTCCTGCCACTCAGTCCTTGTCCGGAATTTTGCCATTCCTA

a score=13699
s chr3           142729570 428 + 160039680 AACTAAACATGACCTTAAATTTGAATTA--TCTTAAAAAAAAAACTGAAATAACTCCACTAAGGATACTATG--TAATATATCTGTTTTCCTTGAGTTCATGTTGTCTGCATTGTGTTTTTAGACTATATTTGATAAGAAGTAACTAGAGAGGAGATATATAGCCACTTATTTAGTTTTCTTTTCTTTTAAGCCACTCTTCCAGGTATGTGGGAGAGAACAATAACAATAGGAAGTGCTGGCAAGACATTCAGTGTGACTGGCTGGAAGGTAAGAGAGA---GGGCACAC-----CTgggttgggactcaatggtagagcaggtagtttgcatgtgacagccttgggttcagtccccagtaccctgt----------agaaaaaTCAGGCTCTTAAAAACAGGCCGACGCTTTAAT--TTCTGTAGAATATTTTGCATTTTAAATGCATACA
s HiC_scaffold_1 128817182 440 + 233722169 agctgaGTATAACTCTGAGTATGGATGAAGGCCTTGGGGAACTGTTGGAATATTCATACTAACTGTTCTATAATTAATATACttattttcattgtattcatGT-ACCTTTGTTATGTTTTTAGAATATGCTAAATATAAATTGATTGGAAAACACGTACCTAAGC----------TTTTCCCCGCTTTTCAGCCACTTTTCCAGGTATGTGGGAGCGAACAGTAACCATAGGAAGCGCGGGGAAGACATTCAGTGTGACTGGCTGGAAGGTGAGAGAAACCGGAGCTCGCTGCAGCCGGGGTGCAGCTCAGGAGGAAGGTTTGGGCTTagcatgtga-ggccctgggttcaagctccaGCACTCTCCTTGCccaacaagaagaaaaagttgCTTAAAAATAGggagggttttttttggttttgtaaaatgttttgtgttttaaatgcaTATa

a score=9000
s chr3           142731082 216 + 160039680 CTTTCCTCCTGGGGACATTTCTGCATCTCCTGTATTTGTCATTTACGCTAATGACTCGCTTAGATATGACA----TATATCCTTAGGTTACTTG--AGATCTGCTTTTGTGTTTTTCCTTTGCAGCTCGGCTGGAGCATTGGCCCTGCTCACCTGATAAAGCATTTACAGACCGTTCAACAGAACAGTTTTTACACGTGTGCGACTCCTTTACAGGTAAGTG
s HiC_scaffold_1 128818097 222 + 233722169 ctttcattgtgtgaaCCTTTCTGAACTGCCTatatttaacaattattttaactACTCCCTCAGCTCTGACACTGATATACTATTAGATCATTTTTTAAACgtgtttttatctcttcttttccCAGCTTGGCTGGACCATTGGTCCTAACCATTTGATAAGACCTATACAGATCGTGCAGCAGAACACAGTTTATACTTGTGCAACTCCTTTACAGGTAGGTG

a score=21559
s chr3           142733783 1376 + 160039680 gTTCTGGTACCATTCCTGGGGCCCCTAGTCTCCTGGGCCTAATCACCCTGCAAAGGCATTG-GGAGTAATGCCTATACCTGGGAGAACA--AATTCACCGAATGGAATGAAGGGAACACGAACATTAAGTCCTTTGCTCTTTACAAT-CTGG--TTTTCCTTGGTCACATTTTCTCTTCT---TTGCC---ACCACTGCTGAAGAAGTTACCCACAGTTCCCGGAGATTTGTCTCTAGATACATTCA-----------CTCCTTGGGACCAGAATG--GTTTCAGTATTTCTTCTGAGGAATGGGGAACTCGGGTTTGCTTGTCTAGACAGCAG-GCCAGGTTTAATTTCCTCCAGTGCCTTCA--TCA-GGAAAGACTCACTCCCTCTTCCCCTGTCTAGCCATTCTTTG-----AGACTTAGCAAGCCGAACCACAGCTCATCTCATTAGAAAACTCTTCA-TGTCTGTTTCTTACCAAGTACACCATCTTTACATAACAGATCGTTTTCAGTTGGGATTTTGGTGTCT--TCCTCTGTTTGTCATATTAGAGTCAAATGTTTACACCAAAAAGTCCTTCCGCCATTAACCTATGGAGCTGAATCGTCCATGGGAAGCTGGCTGTAATTGACCGAGTGACTTCT-TGACACAAATCTTAGTATGATGATCTTTATTTATCCTACCAGGGAATTAAGCCATAACTGACAC----------CCTT------------TGTTAACGTGCAGGCAGCCTTGGCCGAGGCGTTTTGGATCGATATCAAGCGCATGGATGACCCTGAGTGTTACTTTAATTCTCTGCCAAAGGAATTAGAAGTAAAGAGAGATCGGATGGTCCGTTTACTTAACAGCGTTGGCCTGAAACCCATTGTTCCTGACGGGGGTTACTTCATCATTGCTGATGTGTCTTCATTAGGTTTGTGAAGAAGTCTTTTCTATTTATTTCAGAGCTAGACACTCAGGTTTGAAATGATAGGATAGAGGTACAGGGAAAGGGGCCAAAGCCAGAACTGCATCTCATCTCTAGAAGAGAGTGTGTTTTCACAAC-TCCAGCACTTCCAACGATTCTCTTTCCTTTCAGGACTTTTACCTGAACTGTCACTGCTGATAAATGGTTGTTGGGTCGTTGTTGTTCTAGGTGTTCTGTTACA----GAACTGT-----TCTTATTGTGTGCCAGTGTGGA----------GCAGAAAATTCTGAATGTGAAACAGTACATTTGAAATAGTTTTTTGTTTGTTTGTTTGTTTTTTGGTTTTGCTAACTTTTCTAAGTGCTATTTGGTAAGAAAATAGAAGTTTCTAGAAGTTGTGAAGCTATCGGGAAATGCCTGCTATTTTCAAAGCTGCAGAAATGAATGCTATAAACAGAGG-----------------------------GCCAAGCACTCTAATACCCTCTTCAAGAAAG-------------CATGTTAGCAAAAAAGAAAA
s HiC_scaffold_1 128819156 1358 + 233722169 GTGTTAATATTGTTCCTGGGTGATCTATTCT----GACCTAGTTGCCTCCCAAATGCCACGCTTCCTACTACCATTACCATAGAAGCTAGGATTTCAACATATAGACTTGCGGGA-TACACACCTTAGGTCCACTGCACTTAGTGACACTGACTTTTTCCTTGACCTGATTT-CTCTCCCGACTTGCCTGAAGAGGTGGTAGAGGAGTCACCTGCACACTCTAGAAGCTTGTTCCTAATCCCATTtctcttagaccaccttcctaGGATATGAATGCTGTCCCAGGAT------------------AGCAAGGGTCTGCACCCTCAGGCAAGGGAGGGAGGTGCATTCCCACTCTGTCCATGCAGGTGATGGGAAGACTGACCACGCTGTGATTTCCCTGGTCAGTTTCTACACATAGCTTCTGCAAGTCTTTCT-CAGGTCACCTCAGTAAAAACCAATTTAGTGTCTCTTTGTAACCAGGTAAGTCATCTTTATATAATccctc-ttttaaatttagattttcatGACTCATTTCCAGCTCATCACACTAGATTTGATCATTTGCGT--GGAACTGGTTCCTCCTTTAACCCGAGGAGTTTAAT-------------------ATAGGTGCTTGAGTGACCTTTGTGCCAAAAATTCTACTCAGATGATCTTTATTTGTTATACCAGTAAACTGAGTAATGACTAATATTACTATGTTTCCTTCCCACATTTCAATCTTAATGTACAGGAAGCCTTGGCTCAAGCTCTCTGGGTTGACATCAAGCGAATGAATGACCCAGAGTGTTACTTTAATTCTCTGCCAAAAGAACTGGAAGTAAAGAGAGATCGGATAGTTCGTTTACTTGAAAGTGTTGGCCTGAAACCCATAGCTCCTGATGGAGGGTACTTCGTCATTGCTGATGTCTCTTCACTAGGTTGGTACAG-----TTTTTTA-CTATTTCAA----ATACAC----------------------------------------CCAAAGCCATTgtagctttttttctct--taaagggCAGATTTCAACAATAATCAACATTTGCTACAGTTATC------------ATTTCTACCTGAAATGAGACTGTTGTTAGATTCTTGTGGAATCAGTGCTGTG-TAGATACCTCTTTAAACATTGAATTGCGGTCACCCTATTtggtgtatattttaaaaacactgctACATAAAAT----GATGATGCACCCTACATTCA--------TTTGgtaagtttaatttcttttttgcttcccaAG-----AAACGTACTGTTCTGTTACAAGA------TTTTTAGGACTGTTGAAGCCATCAGAAAATG-TTACCCCTTGGGaatacaatgaaatgaa----ataaacaagaaaaatataatacactgaaagtcTACCATATGCCAAGCACTCAAATGCCCTTGTGAAAAAAAGTGGCGTTAGCGCCATCTTTGCAGATAAGACAA

a score=12286
s chr3           142737641 793 + 160039680 GAGACTCCAGCAGGGTGTATGAATAACCTCTAGAAAGTTCTAGGTTACGCCTGTTTGAGTCGGGAGAAAATGT-GAGCCCTGGCAGGCTTAAGTGA----------CGCCTTCCCC-----------------CACCCACCTTTCCCTGTGGTTACAGGTGCTGACCTCTCGGACATGAACAGCGATGAGCCTTATGACTATAAGTTTGTGAAGTGGATGACGAAACATAAGGTACTGTTTACTGACCTTCCCGCTGCCCCCTTA----TCAAGC--ACCTTGTGA----------ATGTGTCTTGAAAGACACTGAACTCCACCCTTGTCTCTTCTCCTT---------TTC----------ATTTTAAAATGTTTT-GTGTAgctttgttg----agacagt----ctcac-tctgtagccttggcatgcctgaaacttg----------------------------------------------ctatatagacc------------------------aggct-agcctccaactc----ttctaatt--ctACCTTTCATACAAAGAGTCCACCTAGGACTTTTTGAGGGATTAAAAGTATTAAAAATACTTTTTCCTTTTAAAGATTACTGTGACGCTCAGCAGTATGTTTCTAATGT--------------CTGTGG-------CCCCTAAGTG--ACATCTGGAACGTGCGATGCTTTCCC-----------ATTGCATCACCTTGTGTG-TCTTTCAGAAACTGACAGCCATTCCTGTTTCTGCCTTCTGCGACTCCAAGTCTAAACCACACTTTGAGAAGCTGGTGCGGTTTTGCTTTATTAAAGTAAGTTGCTACATTCCCACAAATATGCATTTATAGTA-CCTTCACTCCAATTTACAACGCAGCTTTTTTTTTCTATTTCTAAAAAATGAAATGCTAAGTGACACTTTTAAAATTTGACATGCT
s HiC_scaffold_1 128826783 957 + 233722169 GAGACTCCAGCGTGCTGCA-----AACCTCCACCAAATTCTAAAGTCAATCAGATtaaatcagaagaaaattttGAGTCTCAGTGgacttaagtgaaatacatgtaTGTCATCTCAGATATAATTCAAAAGCAAAcctaatttttgttgttgttttagatGTTGACCTCTCTGACATGAAGACCAATGAGCCCTATGACTATAAATTTGTGAAATGGATGACTAAAAATAAGGTAATGTTTATTGGCCTTTGCATTATTGTGTTGTATTTTAAACTTGATTTATGAGGAAAGGTTCACAAGCTTTGAAAAGCATTG-GTTATGACTTTGTTACATGATTTTATACTGTGATTCTGGGTGggggattttaaaacattttcgtTTCAAACTATCAAGCTAGGCAGTgcagcacacagctgtaatctcagcactctaggaggctggagcaggaggatttcaagttaaACCCAACCTGGAGAATTTAGTgccttagaaagaccctgtctcaaaataaaaaaatgtgggggctggggatttagctcagcagtataaatgcctgccttgcaagcaggtagtcgagttcgatccctggtaccaatgaaaag---gaaaaagac-----------aaaaaataaaataaaaataaaaaatgtgctgCAGATGTAGCTAAGTGTCAagctctgagttcagtcctcaaAATGGAAAAACTAGAGTGTAATATGTGTTGCCTCaaaattgttattatttaatcctatttattttttcagaaactaTCAGCCATCCCAGTGTCAGCATTCTGTGACTCAGAGACTAAATCACAGTTCGAGAAGCTTGTGCGCTTTTGCTTCATTAAAGTAAGTTCCACGAGCCACTCATAAACCCATTTATAATATCCTTCCTTCTGATTTATGAagcacctttttttt--tatttttaaaaattataagctCATATGCAATTTCTAAATTTTGATTTACT

a score=25602
s chr3           142743853 2268 + 160039680 TTTTAGTTTCCACATTT-CTGTTTTTACTTTGATATTGCTTCTTCGTCTAAGACTATACATTCTCTTAAGTTTGGGGGTATT----GCTAGTATGGTTTTTATCTTCAATGGGTTTTTCTAAAGTTGGGTGCCACAAGCACCCAGCTATGCCTTCTATATTTAAATACTGCAATATCTTGAATTTATGGTGGTATGTAACGAT-GCAATTATTTTATT----TCTAGAAAGACAGCACACTGGATGCTGCCGAAGAAATCTTCAGGGCCTGGAACAGCCAGAAGTCTT-----------------GACTGGTT-CCATCTTCCTGCAAGGACTTGCTGCTCAGTGCTGCCACCTCGTGGGCACTATAAAGAAACACGGTTCAGGACAAAC--ATTTAAATAAGTACTTCCATTGTCTACAAAGTTAACCCCGTTCCTAACCATGTTCG-GTACATTCAGGTTTTATTCGTTTGGAATACATTAAG----GTGCCTTCCACTGTCGTGGTGGGAGAGTCA-ACTTCTCCGTGTTGTACTTTCTCATGAGTGGAAACGGAAATCGCCGTTACTGCACC----------------AAGTGCAGCATGgc-----ctgcaaaccc--agcacttgggagggggaggcaggagttcaaggtcatccacagtgacatagtaagctgggggtcatgcggggttacgtgagactctcaataaatgaaaGAAACAAAACCAACACATACCTCATCTGCAGCTCGTCTGTGAGGACTGCAGGCTCATTCAGTGTAAAGTCTGGCAACCTACAAGCCCTCACAGGAGGTTGGCCAGGTTCACCTCTCGGTCCTGCTGGGCGCCAGCCATGAG---------------------------------------GGTGCCTATAGCTCCCTCCC---------TAGGACACTAGACTTTGCCCCTGGCTTTGTTTTTTTTCTCTTCCAAGGGCTGCTGTGACTTGGGTGGCCTCACGGTCCACGTGGGCAGCCTGTGTTTTCCACCCCCTGACCTTGTTACCTCTGCCAATGTTCACCCCTGCTCCACCTGAACCACCCACTCCCTTGGCCACACCTTGAAACTATCATCAGTCGGGGCCGTTTCACCTTTGAGATAGTAAACACATCCTCTCTATATATAACCAACTGTCTTCTGGCTCATGCTTT-TGTGGCCCTGTTccctccctcccctgccctcctttcccttaccatccctcccttcctctAAGCTCCTATTTAAATTTAATTCAGTTCCAAACCCAATATTTCCC---------AGAAACTGGTCCATAGCTCTTTTAGGTCAGCATCAACTAAGAGCCTC----------CGGACCTGGCCCTCCCAGGTGATGTTCACACAGCCTACAGTTTGATC-----ATCT----CTGCTGCAGTTCCCAGAGCTCTCAGTATGATTCCTATTAGGCCTC--TTAACTGTACTCATT----TCCTGGCCAACCTTCACTTCCATTGTCC-----------TGGGACACTTT----------------------------------------------------------------------GACTTA----TTGCCATG--------------------------------------------TTGTTTGAACTTGCCTAGCTGGTCAAAAATAAGGACTCCACCCTGGGGTTGAAGTTCTAGGCCTGCACCTGG-----GCTGCTGAGCACACTCAGGTAAGCGCTAGCAGCTATGAACTCAT--CCTTCACCTTTGATAGACATCACTGTGATCCATTCCCCAGTGAGCCTTCTCTGCCTGCTACCACAGCAGCAATTGCTAGCATGCTCTGTGAT--------AAGAAAGAAAATCC--ACCCCCTTCTCATCCCGGGTCACAGCCCACTGCCAGCATCACAACCAAGTCACAGCAGGG---TCCACCTGCTTGTGGGAGACACAAAAGGACGGAAATAAATC-----------------------GCCTGTGATATATGTCTCTGGCTCAGCATTTGTCCATCCTTTCT---------TGACAAAGGACATCC-CTGAACCTTCTGGGCCACACAAGTTGGGGATGGC----GTGGGGAAGGTTGTTGGTTTCAAAACTGGTCCAAGTCTCAAAGGGAAAGGTTACACCTGGAAATGAGTTGGAGACCCAGACCAAAAAAAAAAAGTAAGGCATAAAACGGCAGGAGACAGCTGTTACAGGGCA-TACAAACCTCTTGGAAAACTTTTG---CCCGTCGCCTTGCAGAGGACGTGGGGTGGTGTTTCACTGGTCTTGAGCC-TGCTCTCTACAGCCCTGGATTTGCCACGGCTCCTGAAT--------CCACCCAGGCTCT-GATCGTATCTCTCCTCACATGCTCAG--ACCTAAGTC--------CATCTGCTGTGTCTTTATTTTCTGCTGACCCCTCACAAGTGGACTGTGTCCACGCCTCTTCCATCTTACATA--TGTTTTG---------------TACTATCTCTTCCTCCTGGGGGCAGAATTCCTCCTTCCGTTTTGGTCTCTCCTCTGTCCTTCCCTCTC-TTCCCTACCTGTC
s HiC_scaffold_1 128833387 2378 + 233722169 tttttggttcttCATTTGCCTTTTGCACTTGGGAAAATTTTCTTCACCTGACATCAGATGTTCACTTAAG----GGAGCATTTTGTGCTATTATGGCCTATAGATT-------------------------------------------------TATATCTGAATCTT----TATCTTGAATTTATGTCTGTATATTATGATTACAATCATTTCATTAATTTGCAGAAAGACAGTACATTGGATGCTGCTGAAGAAATCATCAAGGCCTGGATCAGATAGAGATCTTGAGACGTGCAGAATATGGACTGGCCACTAGATGGCCTAAATGGCTTGTAACTCAGTGCTGCCACCTGCTGGATATTGAACAACAAT-TAATTCAATACAAGCAAATTTAAGTAACTATCCGAGTAATTTTTCTGGTTAACCTCACTGCTGATAATCTTTAtggaatttgactttttttttaggtGAAATGTATTAAATGTCTCACCTTCCCC--------TGAGACATTGATGTTTTTGAATGATGAATGTACTTA-------------AAACCGCAGGTTCTATGCCCAGCACCACAgtggaaaaatgaaacatttctcattttataaaaccATAGCAATAATAGATAAGAACTGGGAG---AAGCTTAACCTCTGTGATTCAGT-------------TTCCAAGTT--------------ATAAATGGAGATTTCACA--TAGCAC-TGCTTCATATGAAGGTGGTCTGGGAGGATGAACAGCCTAATCTTTGTAAAGCCTGGTAAATAATAAACACTCACAGGAGGTCAGCCAGTTTCACTTTT--GCTCCACTGTGTACAAACTGCTAACCAGTTACAACCCTCTGTCCCACATGTTCTCTTTACCTTTGTAATAGTAGATCCCTGCCCTTCATAAtcagtggccttgaacttgtctcTGGATT--TTGCCTCTCTGTTCCAAGTACTGCCATTATTTGGGTGGCTGCAAAGTGCACAGGAGCAACC--------ATAGACCTTGACCTCA--GCGTTTGGTGATGTTCACCTTCAGTGTGCTGCAGCCACCCACTCCCTGGG-CACACCCTGAGGCTTTCATCATTCAGGGCTGTGTCA-CTTTGAGGTAATAAAGTCATCATCTCATGCTATAGTCACCTG--TTCCGGCTCATGCTTCACATG----tgctccttccctcttcctcacTCTCATCCTCTCAGATCAC-----TTCTTTAAACTACCATTTTAACT----------------CcactatttctcaaaaaaaaaaaaaaatcatccatcaCCATCTTACATCACAGTCAACTAGACCCCTTGCAAAAACAGAGGTTGTGGCCCTTAC------------CCCAGACTACATAGTGATTTCGGGATCTGGCCCTGCTGTAGTCCATAGAATCCTTGAT-TGTATCCTACTGGCCCTCTTTTGTCTTCACTCTTTTTCCTCCTTGCCTAGCTTAGGTTTCATTGTCCATCTGGCCAGTCAGGATACTTTTGCCACCTTGAATGACCACcccatcattctttttttttttttttttttttgtaccagggatcgaatccACGACctagggcttgccaggcaggcgcttatgctgctgagctaaatccctggtcccccaCCCAATCATTCTAATTCACCCACCTGATCAAAGAAAATAATTCGGCCCTGATG-CAAAATTCCATACCTGCCCTAAGCATTTGCCACATTGCACAACCGAGCAAGGCCTAGTAACCATGAGTTTATACCCCTAACCT---AGATACAACCCTGTGTTC----CCCCAGTAAGCTTTCATTATCTATTACCACAG-AGCAATT--TTGCATATTCTcctattttccataataaaaataaatccaaactCCACTCTCCTTC----------CCCGTTGTGAGCAGCACAATTCAACCACAGCAGATGACCTCATCGGCTCCTGTGAAAAACAACCTG-CAAGAGTAGCTCTTCCTCCTGCGGTCCTCTCATAAGCCTGTAACTTA----TCTGCATCAACACCCTGCCCTTCTTCATTCCCTGCAGTTACAGAGGTCACCTGCTGGCCTGTCGAAGC------AGATGGGAGTGGTGGCAGTGGGGAGGGTTATTGGTTG-AGAATT--TCCAAGCC-------GAGCCATTA-----GGAG-------GGAGGCTCAGACTCC-------------------------CAGGAGCCAATTCTTGCATAGCAGTACAAATCCCATGGAAAGGTTATAGTCTCCGCACCCTTGCTGAGGAGGTGATGAGAT-CGTCACTGAGCTTGAAAAGCGGTCTTTGCAGCCCTGGACTTTTCC---TCCCTGGACTAATCCCACCACCTGTCCTCTGGATCCCATTTCTTCTCACACTCGCAGGAAACTGGTTCAACTCATTCTCCTCTTGTGTCTTTACCCTCTACTGGTTCCTTAGATGTGAGGTATGTTCAAATCTTTCCCATCTTAGAAAACTTTTTTGTGAATTCCGTTGccctattatttccttttcttccaggcataatttctccct---------ttttttctccctccttccctttcattttcttcctctc

a score=14045
s chr3           142748593 332 + 160039680 TACCAAACATTTTACCAGAAAAAGTATACCCAGATAAAACAAGGGGCTTCCCAG------GTGGATTACCCCATAGGCAGA-CGAAACAAAAC--AAATCTCGACCACATTTCTGAGACCCGAGAGCTTCGTTGGATTGCTGCTCTGAGAATACAGCTAATTACTCTATCCTTCCAATGAAACCATAAGTTCCCCTGCCAACAAACAGCCATCTTGGGGTCTATCAAAAATAAATTGTAGTGATAACTGGGCTTTCTAATCAATATTAACTTCACCATGTTAGACAGCTGTTA-CCCTCTTTACGTTTCCACTCAGCATTTGTAAAAGAAATATTACATAAG
s HiC_scaffold_1 128844584 338 + 233722169 taccaaatattttaaattaaaaattattattagatAAAACTGGAGGCTCCCTGGCTTTGGTTGGATAAACCCAGGggtaaatcaaaacagaatgtaaaCCTCAACCACATTACTGAAAcatgagaattttattttattgctgctTTGAGGATACATCTAATTATTCAATCATGCCAATTAAATAGGAAGCTCACCTGCTGACAAAT-GCTATCTTGGGATATATTATAA-CAAATTGTAGAAATAATTGAGCTTTCTAATCAATATTAACTTTGTCATATTATACAGTTACTATTTTTCCTTGCATTTAGatacagcatt--taaaaaaaatagtacgtaag

a score=14319
s chr3           142755198 680 + 160039680 ATTTTAAAATACAGCCTTTCTATTTGTGAGT------ATCATATAAACCTGTAGTGACTGCGTGTCTGCTCTCTGCAGATGGATTATTCACCAGGATACAATGATGCTCCAGCACTCTAGCGGTTACCACATTTGCTTTCCAGCAGCTGACGTAATAGAATCGGCCTCGG-AACGCATTGCTTAGAAAACATCCTCAGGACAGGGATTGGCTTTAAT-CGTAAACTGCACTGGGATGC--------------ATACCGTTTCCTAATCCAATCTTAAA-GCAGCTTCCTGATTTAGAACGCCGCGGCTAAAGTT--ACAAGCACCCTACTTTGAGCATTTGTCTTGCTGGTAGGCTTTGTGCAAACGTGGATAACATTGCGCG---GGGCATTTCTATGAATACAGTATTTCCTATTTCC------ATTCCCTCACTCCAGTTCTCACAAGAAGGATTACCGGCCTGAGGAGCTTTACCAGATAAATGGTTTTTGGAGTCTTTCCA---------------------GGTCAATTTGGAATGCTGTGAGAAGTGACTGGGGGAAAGAAAGAAATGGCATCGCTGTCACACCCT------GCGGGCATACTTCAC---CACCTTTGGAGTTCTGAGTTTGT--AATGAGATGAGAGTATTTGGAACTAGG---AAGTCTCATAGAATAAAGCTTTTTTAGTGTGTGGTTTTCATGGACACAATAGTA--TCTAATATTAAAATTCAGTCTCT
s HiC_scaffold_1 128851170 720 + 233722169 ATCTTAAAACACTGTCTTTCACACCATAAGTCTTTATATCATGTAGACCCGTATCTATTAGGCATCTTCTATATGCAACAAGATTAATCACAAGTGTACAAAGA-----AAACATCACAGTAGTT--------TACTTTTAAGTGGCTGAAATAGCAGAATCAGTCCTGGTAAAGCATTGCTTAGAAAAGGCCTTTTGTGCCTGGACTGGTTTTAACatctaaaatgcattaaaatgttaGGGGTCTTCTGTACACTATCCTCTGTTTTGAACATAAATGTGCCTTCCTGTTTTGGGATGTTATGACTAAAAATTAAGAAGTTTCCTACTTTTAGcatttatctttcttccaattTT------AATTAGGATAAAAATGTCAAAGTGGACATCTTCATGAACGTAAGTCTCTCAATTTTTCAGATTACTTCCTCACCCTAGTTCTCAGAAGTGGGATCACTGGCTCAAGAGGCTTTAACAGATAAATCATTTTTGGAGTACTGCCAGATTGTCCTTTAAAGGGGCCTGGTCAATTTATAATATGGTGAGCAGACATGACAGTAACGAGAGAAG------CTTTTTAATACCCTTACCGAATGGTCACACTTAATGaatacttt----gttttaatttgattaaatactatgagattattttaaaatgggtTTTAATTTTACAGAATAAGGC--ATTTGGTCTGTGATTTTTATGGAAATAGTAAAAAGTTGAATGCTAAAATTCAGTCCTT

a score=12891
s chr3           142757714 466 + 160039680 TGCTGTTTTTATCACATCCATTTAAAAGGGTCCAAAGAAAACTACCGTTCTATGAACACTGAAGTGCA---------------------TCTTCCCCTCTGATTCTGTAGGAGGGCGTGCGCAGGTGACGGCTCTTAGTT-ACAAGCCAAACACTTAGTCTGCGAGCGATCACCTAGTAGGTGGAGAAGTCGGAGGCTTTTCACAATGAAAAGCTTGGTTTATTCTCCAACGGAAAACAAGCCACAAAT--------GAGGTTTCCAGACAATCGACAAACAAACAGAGCAAGCAAATTCAATACCACACATGCAAGAACGCTTATCAGTGAAATGTGAGCCAGGGACATTGCAGATAAGAGAGCGCTGGGCCTGACAAGCGCAAGTGCCCTCGTGCGAAGTGCTGGCAAGGGTATTTTGGATTACAGCTGCCTCATGAGACCAAGAGCACCTGATTGCTGGGGGAGCGCT-CTGATTAAATTCATCTTTGGATCTT
s HiC_scaffold_1 128852232 490 + 233722169 tgttctgtttatcaAAATTGCTTAAGAGA-TCAAAAGAACATTGCTGCTCAATGAACACTAAAGTAAAAAGAGAATTAATTTCTACAATTCTTTATCCCTGATTCCATAAGGAGACAACTGACAGTGAAAATTTTCTGTTTACAGATGATGAAGCCTATATGCAACCTATTGCATCTTGGG-----AAGTTGCTGGCCTTTCCCAGTGACAAACTGAATTTCTTCTCAAATAAAGAGTGAGACACAAATCAAGATTCAAAGCTTCAAATcaatcactaaaaaaaaaaaaaaaatagagtcaaGGTCACATATGCAAGTCCATTTAGCAATGGGATTTGAGCCAGGCACATTTAAGTTTAGGTAGCACTTGACCTAACAAACTCAAGTGCCCTTGGGTGGACAACTGGCCAGAGTATTTTAGATCACAGCTGCC-CATGAAGTCAGGCCCATATGACTGCTGTGGGATCATTGCTTGTTAAATATATTCCCTGATTTT

a score=9377
s chr3           142771328 185 + 160039680 AAAGACTTGTTTCGTATTA--GTTGGGAAATATAAAACTTGGTTTTGTTTTCCATGTA-GTTTGGATGCTCTCCCAAGAGTCACATGTCCGAATC-ATCCAGATGCAATTTTAGTTGAAGACTACAGAGCTGGCGATATGATCTGTCCCGAA--TGTGGCCTAGTTGTAGGTAAGTAGCTATTAAGGTTTT
s HiC_scaffold_1 128865483 190 + 233722169 AAAgacttttgttatatttttgttgtaaggt-tatacatttttttttttttccatttaagtaCGGATGCTCTTCCAAGAGTCACATGTCCCAACCCATCCAGATGCAATTTTAGTGGAGGACTACAGAGCTGGTGATATGATCTGTCCTGGAGTGGTGGGCTGGATGTAGGTAAGTAGCTATTATGGGCTT

a score=16190
s chr3           142775171 589 + 160039680 ACCCTTGAGAACATTCTGGATTGCAGTTTTCTCCCAGGGAAACTATTATAA-TACTGCCTCATTGGATTT--TTAAGTGGCAATCCCTTTATATATTCAGGTTTTTTTTTTTTTTTCTGAATAGCCCTGCT-----TATCATTTACTCATGTGCATGATTT-TTGGCTGAGTTATGGTTTCATGATGTGCTCTTTGAGTTGCCTTGGAAATGTGATTC-TTATAAATGCTGCTGGGTGCAGTTTG-TCTAAA---AGGGAGTGTTTCTTAGTATAAGGCACAGATTCTTGACTGAGTCACTTAAAT-AGGTCTATGTATTTGGAAAATGTACCTAATAGCCCATTGCTGGGCTTTCCTGTTTATCCTATATACTAGGCCACTTTATCATTTAGTTTTAAAGTCTACTTTGTCTATTTAAAAGTGTAGTATAAAGCAA--------------TCAGTAAAAAGTATTTTTATGCCAAAAGG--AAAATGTTATGAATGAA-GGATCTTGGCTTGCTGGTGCTGTGTCTCCAAATACTGAAGCAGAATCACAGTAAGTGCAGGCCTAGCTGCAAGCCTCTTCACCTGCACTTGTCTTGATACCTTTATTTCTGTCCCTTGAAA
s HiC_scaffold_1 128881668 588 + 233722169 ATCCCTGAAAAGATTCTCTTTCATAACGTTTTTCCAcagcagcttttaaaaatatttcat--ttagatttctttaaatgaaaatcc-TTTatgtattcagattttttt--------ctgaataggCCTGCTCTATTTCTCATT-ACTCATGCACATAGTCTGCTGGCCTCATTGTAGTTTCATGGTGTGCTATTTGAGTTATTTTGGAAATGTTATTCCTTATAAATACTGTTTTGGGCAGTTAAATATAAATAGGGGGAATGGTTCTTAGTACAAACCACAGATTCTTGAATGAGTCATTTAAATCATTCCCATGTATGTGGAAAAATTACATCACTACCCTGTGCTGGG-TTTTCTATTTATAC--TCTACTAGGctaccttatta-----tttttaaatctatttggtcttttttaaag-atagtataaAGCAAGCTGTGTAAGAAACTCATGGTAAGGTACTTTGAGGCCAAAGGGAAAAAACACCATGAAACAACGTATCTT---TtcttaaagctttatttttaatcttgtaGGGAGGCTTAAATGATGTGGATG------TACTTTCCTTTCCATTTG---TTCTCTTAATGCATTCATTTATGTTCcttgaaa

a score=19807
s chr3           142777236 1228 + 160039680 GCAGAGAT-GAACATGGTGAGTTTTCAACTGTCCTGCGGC----AGAATTCATTGAAAGAGTTCAGTG-----------------------GACTAAGTTGGCATCTGATACACATTTCA-----AGCTGTGTGATCTTTGGCCAATTAACCTCGTTTGTGAAGTGCCAGTGAAAGTGGTGCCTGTGCTTAGATAGCTCTGGGGATTCAGAGATAACTTTTACTGTGGGCACACTGATCAGCGTGGGCTTCAGTGTTCAATGCTATCTCT-GTTTGCTTCAAAGATGTTTCCAGACAGTGAGCTCTTCTGCTGAAGCAGTG-CCAGTGAG-CCCATCCATGTCAGGTGTTTTGATATCATA-GACCTAGCCACAACCTTTCT-----AGAAAAGTATGCCTGTCTGCCTTTTTA--AATTCTGCCTTTAAAATTGTATtctctctct-ttacttgtctctctttctctctgtctgtctgtctttttttttctttttttgagaca-aagcctggggaattcacagggatccagatatt-tacctgcctcctctacctgagtgctgggataaaaggcttgcaccaccacacctggctTCATTAT----TATTCTTTGTT--------GTATCACATA--------AGGAT---------AATTTTATTAttttgctttgatctatgaagcaaggt--------cttcttatgtatatgcagtcaatttaaccttgatttctcttttatggatcagcctcccaaatgctaggactataggcatagacttaccatacTAGCTTTTTCTTTTTGCTAATTTTTAACTAATTTTTTCTTGTAAGATTCAGGACACGAATAATGATAGCATACTGTTTACATAGCTCATTACTGGACTGGTTGGGAAATGCTTCAGAGCATACATGTAAGGCATGGTATCTAAGCTGACTCCCAAGTGTCTATATTAGGATGCTAACC--ATTAGCCAGCCTGGGTA---------GCTGAGTCCTATGTC----TGGCTGGGTGAATAACTGTGTGCTTAC-TTTCTTAGGGGACCGAGTTATTGATGTGGGATCTGAATGGAGAACTTTCAGCAATGACAAAGCAACAAAAGACCCATCTAGAGTTGGAGACTCTCAGAATCCTCTTCTGAGTGATGGAGATTTGTCCACCATGATTGGCAAGGTAATAATTCCACTTAGCAGGAAATGTCAAGGGGAGACTAGCTAAAGATCTAGAAAGTTAGGATTTTTGCAAAAGTGTCACTAAGTGTCACACAGAGGAGACCCTTGACTTGGGAATAAGAGTCACCAGTGTTAGTATTG
s HiC_scaffold_1 128884122 1203 + 233722169 GCAAAGATTAAAAATGTTGTGGTTTCTGCTTT--TGCCACTCTGACAATTCGTTGAAAGAGC-CAATGTTTTGCAAATGCAACATAGAACAGACT---TTGGAATCAGCTGTGCCTTTCAGTTCCACTTGTGTTATCTTAGGCCAACATGTCTCATTTATAAAGTCACCATCAAAGTGGCACCTGGCTTTATAGGGCTGTGAGG-TTAAATGAGAGCAAGTACAAAGGGCACAGTGAGTAGCATG--CATCAGTGTTCAGTGTTACCTCTTGTCTACTCTGAAAGTATTACCAGATATTCAGCTGTT-TCCCCAAGCAGTAATCAGTCAGATTTACTCATGTCTGGTGTTTGAGCATGACATGAATGCTCTGCTGCTTTGcctaaaaagaaaagtttgtctATCCAGCTTCTCACTAATTGTAGGTGTAAGGTT-TATTCTGTATCCATTATTTAGCCAAAATGCTTTTCATCAGATAGT------------TACTTTGAAACGTAAGCCTAGG---------------CATATTTTCTGCAAGCATTCTCCAT-----------GAAAACAAGGTCATGTCA---------GTATCATTctgaagtgttttttgttttcactgaatGTCACAAATTTTGTACAAAATTTATTCTAAAACATTATTctactgctttattttatttgaataggttcattctgctatttttacaaatgca-----------------ttttcttctaagaattagGATGTGAAGAATTAAAGCTGTA----------------------CTTTATTTAgggatcatttctatata--tagttattagaatataaagaatatgaaaaattaaaa-------tttgtaaag---aataTTGAATAAGCACAGAAATACTTCAGGACA-ATGCCTGGGGCATGGGATTTAAGCTACAGCCTAGGTCTCTTTA--GGTTTTCTAAATGAAAGGGCTGATTTGAGTATTACATACTGTTGTGTTCTGACTTACCATGACTAGATGATTTAATATCTGCTTATATTTCATAGGTGACCGGGTTATTGATGTGGGATCTGAATGGAGAACTTTCAGCAATGACAAAGCAACAAAAGATCCATCTCGGGTTGGAGATGCTCAGAATCCTCTTCTGAGTAATGGAGATTTGTCTACTATGATTGGCAAGGTAATACATCCATTCAGCAGACAGTCCCAAGTGCAGAC-----------CTAGGAGTTCGGGATGCTTGTGAAAGGACCAGTCACCGCTCCAATTGGGAG--TCTTGGTCTGAGAATAAGACTTGCTGCCAATAGCACTG

a score=55692
s chr3           142779624 2015 + 160039680 TACATTTTCATAGACACTGTTCAC----ATTTTCCAAAAA---------TGTTGACCAAGGTTAAATCTTTGTTTTATAGGGTACAGGAGCTGCAAGTTTTGATGAGTTTGGCAATTCTAAGTATCAGAACCGGAGAACAATGAGTAGCTCTGATCGAGCAATGATGAACGCATTCAAGGAAATCACGACCATGGCGGACAGAATCAACCTCCCTCGCAATATAGTTGTAAGTTCTTATCCGCCTCCTCCAAGCCATTCT-GACTTTACTCTGCATAATTTAATGAATACATACAATTTTGATACTGTAAGTGATTAAATGGCCTAGACTTAATTAAACTAAGTTTCTCTGCTTTGAAGGATCGAACAAATAATTTATTCAAGCAAGTGTATGAGCAGAAGAGCCTGAAGGGCAGAGCTAATGACGCGATAGCCTCTGCTTGTCTGTACATCGCCTGTAGACAAGAAGGCGTTCCCAGGACATTTAAAGGTAGGCTTC-AGTTGTACCAAGTAG-AGCTCAGA--CAGGCAGCGTCAATGCTTAATGAC-----------------ACTGCACAGTGATCCATGTACACACCGTTTGCCAGTGGCTCTGTAT---GTTCTTTGACAGAAAAATGTACAAGACAGGCTTCTTTGCCATGTTCTTTGCAAGCTGCTTATGCAGGTAGC-ATTTTAATCCCTGTAAGTCA-------------------ACAGTATAGCTGACTG-Gttttttttttgtttttgttttaatt---------atttatgtatg----------tgagtgcattgtagctgtcttgagaggcaccagaagagggcatctgatcc-tattacagatggctgtgagccaccacgtggttgctgggagttgaactc--------------------------aggacctctggaagaacagccagtgctcttaattgctgagccatctctcc---aaccccACAGCTGACTGCTTTATAGGAGCCCTGA------CATCATCTGCTGGAGAGGC-----------TTTTGAAGTTACAT------ATATAGCTGGTGATGGAAACCACAGCCAGCATAGGTTTCACATTTGAGGGGTCAGGTCTTGGAA----GGGGTCAATGTAATTAGGTTGTTGTTTCATTTTTGTT--------TTGTTTTTTGAGGCTTATTGT--------TTGCAGTTTTATGCAAACTAAGGACTTCTGATTTAAGT---GCTGGCTTTTG-TCGAGCTTGTGTTTCCTCAGGACAAACTCCTCCAGTGTTGTGGTGATACCTACACTGCCCATCACTGACCA-----GGTCCAGGTCGGGACTAT----------AGTCACCAT--ATCCAAT-GAGCAT----------TTTCATAAGCTTTCCTAAGTCACGGGTAGAGGGATGACTAGCA-----------CAGCTCTTTTGCTGTAACAGCTCAAACAGG---------------------------------GGTAAGAGTTTAGCTTA-TATAGCGACA---------------GCATGCAGACAGTTGCAGGTCATACATGTGCACTCGCATTCTCCAGCTTGAGTGTTTTCT----------TTCTT--CTCCTTAGAACATTTCTT--ACCAGGCTG-----------TCAGAGAAGTT---GATTCCTTGGAGAAACTTA-TTGTATAAATTGAAC---TAGATAAGTTTGTGTTTTGAAAGA---------AAAC--AGTCCAAAGTGTGGTGAAAATATAAACCAATATGTTTTGAATAAATAAGCTCCATAGGAAGTACTTCCGAGAGGATTTAGGGCTCATCTTTAAGCCTTGATTGAATTTTTTACAACCAGaatattttaataatttattaataataaataataattatttattacttaattttataataaagtttataaaatGAATTGTCTTACAAATTCTTTAAAAATACTTTCTCTTTTAGAAATATGTGCTGTGTCTCGAATCTCTAAGAAAGAAATTGGCCGCTGTTTTAAACTGATTTTGAAAGCTCTGGAAACCAGCGTGGATCTGATCACAACTGGGGACTTCATGTCCAGGTTCTGCTCCAACCTTTGCCTCCCCAAGCAAGTGCAGATGGCAGCTACACACATAGCCCGCAAGGCAGTGGAGCTGGACTTGGTTCCTGGCAGGAGCCCGATCTCTGTGGCGGCAGCAGCTATTTACATGGCTTCCCAGGCTTCAGCTGAGAAGCGAACACAGAAAGGTAGGAGCTTCATCAGGA
s HiC_scaffold_1 128890147 2200 + 233722169 tatattttcatataaattattcatttaaatgttACAGAAAGTTTTGTAGTGTTG--------TGAAACTTTGTCTTACAGGGTACAGGAGCTGCAAGTTTCGATGAGTTTGGCAATTCTAAGTATCAAAATCGAAGAACAATGAGTAGTTCTGACCGAGCAATGATGAATGCCTTCAAGGAAATAACTACCATGGCAGACAGAATCAACCTCCCTCGAAATATAGTTGTAAGTTCT-GTGCACCCCTTTTAAGCCATTCTTGTACTGACTTACCATAATTTAATGAACACATGAAATGTTGGTATTTCAACTAATTAAATGGCCTAGAATTAAT-AAGCTTAGTTTCTCTGCTTTGAAGGATCGAACGAATAATTTATTCAAGCAAGTGTATGAACAGAAGAGTCTGAAGGGAAGAGCTAATGATGCCATAGCTTCCGCTTGTCTTTATATTGCCTGTCGAcaagaaggggttcctaggacaTTTAAAggtaagtttttaattgcatAAAGTAACAGACCAGAGTCAGGCAGTTTTGACGCTTAGAAGCCAAGTTATGTCTTCATTGTTACACAGCAGTCCACCTGCATATCACTTGCAGTTACCTGTTTATTTTATTCCTTAACA--AAAATTTACACCATGATCTT----ACTGTTTTCCCTGTAAGCTCTTTTCTCATGTAGTTATTTTAGACTCTGTAAGCCATTGCATCTTTGCTAGTAAGATCGTTTGACTGACTGCATTTTGTCAGCACCACTATCATAACCTACAATAGGACTTTTGTAGAACGTCTACAATGTATGAATAAAAACAGCTTCCAGAGG-GCCAGGGtaaaggtttagctcagcggcacaagtgcctgc---ccagcaagagCAAGTCATGAGTTgggtccccagtacccccccacacccccccaaaaaaaccccgAGAAAAACAGCTTCTG-------TTGCTAGTGCAAGTCTCTGTAAGCAAGGGAGTTGA--GCACCACAGGAAGCCTCATTGAAGCTTTTTCTCCAGATGAAGCATTTCTGTTCATTCTTAAATTAGAGGCTTTGAGATAACTGGTGTTTCTCACCACAT--------GAATTCATGAT----------GGTCTCTGCACATTGTGGTCGCAGTACTTAGTTTG-------ACTTTCACTGGCAAAGATTGTTAGCTAAAGAGTGTAGTAAACCCACCCACCTTTTTGTTGGGAAGGAGACATGGtgctgtagttcagactggccttgggttCATTATGTg---ccacaggctggcctt----aaactcgcagggatactcctgcctctgtctcctgactactgggattacagatgtgtactatCATGACTGGCAGTAACCTTTCATTCAATCGAATatggtatttgttttttataagaTAT--TATGTCA-----AAGTGAAGAAGCAGCAGCTTTTCTTATCATCTTTTTTGTTGCTGCAGCTAAAACAGGCTTTTCCTGAATTTATTCTTAATGTGTTTAACAGTCAAGTGTTTAGAATAACAGAGTGACAAACTTTCTCTAATTTGGTTGTGGCCTGTAACAAGGATTGAGTGTACA-TGACATCATGTAGCTGAGGGGTATTCTAAGCTTGAGTTTCTTGTCTACTTGATATGCTCCTTGTAACAGAGTGAAATGTGAACACCAAAGAAATTTTTGAATAGTTGAAGAGACTTACTTGTATAAATTGAAACTATAGAGAAGTCAAGATTTTGAAACACTGACACCTAAATTAACTTTACAGTGtaatgaacatttaaattaagaaatttt----aGGTTAGCTTTATGGAAAATATCACTGAGAAGATCACGGTTCCATCTTAAAGGCATGATTGAAAGTTTTGCAAGTAGaatgt----atgattttt--ataattagaGGTAATTG-----------ATTTTATAATGAAGTATATGA----------CTTAcgtagattttaaaa-tattttgtcttttagaaaTATGTGCTGTATCTCGAATTTCTAAGAAAGAAATTGGCCGATGTTTTAAACTTATACTGAAAGCTTTAGAAACCAGTGTGGACTTGATTACCACTGGGGACTTCATGTCCAGATTCTGCTCCAACCTCTGTCTCCCAAAGCAAGTGCAGATGGCAGCGACGCACATAGCCCGCAAGGCTGTGGAGCTGGACTTGGTTCCTGGGAGAAGCCCGATTTCCGTGGCGGCGGCAGCTATTTACATGGCCTCgcaggcatcagctgagaagaggaCCCAGAAAGGTGAGGCTGTCCCCAGGA

a score=27304
s chr3           142783086 625 + 160039680 TTGTATTTCCCTTATCAATTTAAATAGTGAAA-------TTGGAGTGTTATTTTTCCTCTTGGTAT---------AGCAAAGTGGTGGAGCAGATCAATTGAATGTCTTGTTTTTTGTCTGTTAGAAATCGGGGATATTGCTGGTGTTGCTGATGTTACAATCCGACAGTCCTACAGACTGATCTACCCTCGGGCTCCGGATCTCTTCCCTTCAGACTTCAAGTTTGACACCCCAGTGGACAAATTACCCCAGCTATAAGCTGAGGCAACTAAGTGTCACACTCTTAATGTACATGGAATATGGAACTTTGTACATAGC---CACACAGTGCTGGTTGAGCCTTTAATGAGGAAAAAGGAGATGGTACCCATTCCAGAGCTAAATATTATTGCTTAGTCTTCTGTATGTATATACTAGTGCAACATATTTAATGACTTAAATTTCTTACTGAATCTGCTTTCTTTTTTAGTGATCTAGGAAACAGTATTTTGGAAGGTA-TTAAAATAATGT--AATTCTCAAATAAAAA---TTTAAAACCAAAGTTTTTGTTATA-----GTATTAATGAAATTTATAACATATAATTATAAATCCTGTACATCATTACAGGTAATGAATGTAGCTGAGAGAGCCTTGCTTCTCATCATTTTT
s HiC_scaffold_1 128893304 643 + 233722169 ttgtattttcattatcagTTT------TGAACGCATTTTtcggttttttgttttgctgttgggTACTAAGGAGGAAATAGAAGGGGGAAACATGGTTGTtaatatttgggttttttgtcttttagaaattGGAGATATTGCTGGCGTTGCTGATGTTACAATCAGACAGTCCTACAGACTTATATATCCTCGTGCCCCAGATCTCTTCCCGTCAGACTTCAAATTTGACACTCCGGTGGATAAACTGCCGCAGCTCTAAGCTCAGGCATC-AGGTG-CAAACTCTT-ATATACTCAGAACTTTGTCTACTGTACATAGCCTGCCCACAGTGCTGGCTCGGGCCTTCTCGAGGAGCGCAGACATGGTACGCGTG-TAGGCCTAAACGTTACTGCTTGGCATTCTGTATGTATATACTAGTGAAAcatatttaatgatttaaatttCTTACTGAACTTGCTTTCTTTTGTAGCAATCTAGGAAACTGTATTTTGGAAAGTATTTGAAATTATGTAAAATTcttgaataaaacattttcaaaacttaattttttgttacaattacatatatatgtaatttataatgtataattttaaataatgtatatCATTGCAGCTAATG-TTGCAGAT-AGAAGtccttgttttccattttcttt

a score=22674
s chr3           142786404 451 + 160039680 ATCAGCTGGGTGACAAGGAGTTAATAGCTAGAAATTTCCCTTTAGTTATTCTTGCAAACTAAAAACTCCTGCATCTCAATGCCTCTTGATAGTATGCCTTTGTGTTCATAGCAGTAAATATATTCT--CCATGGCTGTCTTTGGGGCCTGTGCTAATTTTCTATCACAGGTGTGAGATTTACTTTAATTATCATAATGAACTACTAAAGGGGTCAGCCGTGTACCCATCTGGTCCTAATCCAGGCAAAAGGCTTCTATGCCCCAGGCTAATATTTCCAATTGTCAGTGGCCCTGACTTTTCCTGA-----------TGCTGGA-TTTTAATCTCATCTACCATTTGTGGAGCTTCGGAAAGACTTCCTGACCCCCTCAAGGCATCCTTATGCTCTCCCCACCCCAGATCCCTACACATATGCC---TCAGGATATCAGGACTAAGTGGCATCACAATATGGACATTAT
s HiC_scaffold_1 128897221 461 + 233722169 ATCAGCCCGCTGACAAAGAGTTAATAGCTAGAAACATTC-TTTAGTCCTTTCCCCAAACTAAATGCATCTTAAACTTGATGCCTCTTGATAGTAAGCCTTTGTGTTGCAGACAATAAATGTACTTTACCCATGGATGTCTTTGGTTCCTGAGCTAATTTTGTATCACAGGTGCAAGATTTACTTTAATTATCATGATGAACAGCTGAGGGGG-CAGCCTATTACCCATCTGGTCCTAATCCAGCCAAGAGGCCTCTGTGCCCCATGCCAATATTTCCAATTGTCAGTGGCCCTGACTTTTTCCAATTATCAGTGGCTGCTGGATTTTTAATCTTGTCTGCCGATTGTGGAGCTACTGGAAGATTCCCTGACCCCCT--AAGcatcc---tgtcctcctcctcccacaTATTTAAACACATGCTACATCGGAGTCTATGGGTTTAAAGGCATCACTGTAAGCGCATTAT

a score=154492
s chr3           142791210 3437 + 160039680 TTTACATTAGCATATTTGCTTTTTAGTCTTGGAAACATCATTGCTTCTCTCCTCCTGGCAACTTTCCTGGTCTTGGTGTCTAGTGACAGTGG---------CCATTCTGTGCATGGATGAAAGAAGCT-------GTAGAATACAGACCTAGATGAAATCTCCCCATTATTCCAAGTAAAGTGGACAATGT----------------------GCCTTCTCCAGGATGAAA--------AGAAAGCTAACTAAAAATAATTTTCTTGAGACCTCCAAGTAGAGCTAACGTTTTTAGCCAACTATTTTAA-CACAAGGACAATTCTAAAAGGAATGAAAACTTAAAACCAAAATTACAAATTTCAATCTATTTTAAACTTTAATTTGTGCATTTGTGGTAATTTATGACTGCAAAACCCCCTTTTTCTTAGAATGATGTAAAGGCACATTTCATTTGGATGCATAGGGTACCATTCTAAAGTATCC-ACTTTCCTTACAAAGTGCTTGAGCAGTCA-ATACACATACAGTAATAGCAAAATCTATTTACACTCTGAAAATTTAAAATCTGGCtaaaatatatatatata-tttaaaCTACAGAAAAA-TGAGTGCTTTTTTTTTCAGCATAATTGTGTGACTATGCCCTGACCTCTAAATTTTTTAATGATTGACTTCAATTAAAAAAATTTTTGTACACTGTGTA----TATAACTCTATGTCAGTTTTTAA--TGCTAAAAGCCCATTTGAAAAGTTGCTTTCTATGCATATTTCAGAACCAACAAAGGTATGCAGACTGTACCTCAAAAGTAGTTAGTGTTTTATTTTCAGACTGAGTTAACACTGGTCAA-TTAAAGCTAGACAATTACGCTATTTTTTTTTTTTCTATTGTTCTCTTCCAAGGCAACT-AACTGGCATTTTAAAGCAATTTACAGCAACATATTGCTTCTCTTTTTAGAAAATTTTCTTCCAAAGG-ATCTTAAGTGAAAAATAATAATGAATTTGGAAGGTAATATAAAGAATCTCTGGACAATTGTAATCATTCTCAGAGTACAATAACAACA--------GGCCAATGTATGTCAGCAAAGCTGTTTCAAGCTCAACTCTTCATTATTTGTGTACTTTCCTGCTTCTCAATAACGCAGATTT-GGAAAATTGTAAGAGATGAGCTCACTGTGATTACATGGTTAATTCGAGTGTGGTT-GTTACCATTCTGCTGTTCCTGAGGTATCATGGCCCTAACATGCTAAGCAAAGAGTTATTGATATTACTGAACTGAGGGAGAACAACAGAGTGACAGCCTAGGAGAAAAAAGGGAAAAACAAAACAAAAATCTAATAAAATTCCAGCCCAGTGAAGATCATGATTTGCAAACAGGCATATGGTAAGAGCGATACAAAGCCAGGAACGGATCCTCT-GAGGA--TGCGTAGAGCATTTGATCAAATTATTTGTGAGACTTTTGAGGTACAGCTTTAGTGTTATAATAACTTTTTATAAAATATAGACTGTTTTATCAAAAATATTTATACATTCTGTTACAATATATTGCTTTAGCCCTCAGTAACTGCCAATATAAAATCTGGATCCAGCGGCCTAAAATGTACAAATGCACTTAATGGAAATGCTGGAGTTGGAGGTGTCTGCTTGGCCACTGTACAAAAGTGATGACGTGGTGAAATTAAATAATATGCCTACAACACAGAATACATTACAACTTGTACATATACATGTTCACAGCATGTATACCATGATAATCTCTATGGTTTAACAAAGATAGAGTTTCCTTCTACAGCAGACACAAGAACAAGATGTCTAGGTTGAAATACGTGTAGAATGCATATCAATAAAGGGT-TAATCAGGTTCACTGACTTTGGAAGACCTGACTGAACATCCTCCACGGTGCCTTGACTTTGGGAATGCATAGAGTTAGCATGGTATCTTGGTTCCAGCTGCTTAGAAGTCCTCATTGTTAC-TGTTAAGTGAATGCTGATGTCCCTATCTTTTTGCAGCATTGTTTAATACACAAACTCATTTGGCAGGTAGCTCTGCTGGAAAGCTAGGAGGCTCTGCTACATGGTTGGTAAACTTAAGGCAATAAAGTGTTCTCCTGATAAATATAGAAAATTCATCAAATA-GACATCAATACATTCTCATTCTTTTCTTTAAA--------TCAAGCCACCAAAGGTGTACAAACTGCCAC--ATTTTTTCATATTATAGTGATTTCTTAAAAAAATAA---------TTGCCTTAGTGAAATAGAATCACACTTTTTATATTACGAGTAATAGCATCCAAAGCCCTATTTTTT-CTTTTGTAAAATATAGTTAAGTGATTAATCTTCCTTCCACTTAAGGCAGGC-CTAGGGCAAACATGGGGACTATAAAAAAGTGGTTCTT--CTTCTTTTTAAAAATA-AGAGTATTGATGTAAAAGTATTTATTTGTAATGGATTTCCATGGCCAATGTTCACTCAGCCTAAACTCCATGAAACTGCTTCCAGTGTTCAGATTTACGTTGAAAA-CATT------------------AAGGTAT-AAAACAGTACTGTAAC-CACATCTTCATGTGCTTTATATAATC---------TCAGAAGCTCCTGGTGGCACGGAAAGGAAATGCAGGGCTGCTGTTTTCAAGAGGTCTTCTTGTTGGTCAGTCTGCTTGG--TCTCAGGGTCTAG-AAAC-TTAACACCAATCAGCAACGTAGTCAAAATCGTGGAACATCTCCTGCTCCTCTTCCAAGAGTATCCTTGGTTCTCGAGGTGGAGTCAGAATAGGTGCTTCTGAGGTAAATTCATCATCAAAGTTACTAACATCTTCCCGTCCTCTAATGGTAGGTACAAATGGTGGCTTTACTTTTTTGTCCATTAGAGCACTCCAGTCGGTTAGCTAGATCACAAAATATAAATCAGCCGGTTTAGTTTTGTGTTCCCAGTCACTCAAGTTTCATAAA-------------AGAACTCTGAGCTT--TTACACTTACCCGGAAAAACGGGTGCTTCTTGACATCCTCTGCATCCTTCTCACCAGCTCCCAGGCGCCGCTCAGGATTTCTCCTTAGCAGCT-----------AGGAAGTTAAGATAAAACCAACATAATGTGTTTCACCAACA-GTGACTCTCACTACTTTCAAAGACTTAGAATGTTTTGTTT--AGATTTGTCTAAAGCATGCAATATCTATGAATTAAAAACAACTTCAAAAACTCAACTGGGAAATTCTTTTCAACAAAAAACCTAAGTTTAAA--------TAAAAAAAATCTTGATCCTAATTTCTTACCCTTCTCATTATGGAAATGGCTTCTGTAGATAAGAACCTTGGATACCTTACTTCGTCATTTACAATACTGTCAAAAACCTCTTCTTCATCATCACCAGGAAAGGGAGACTAGACAAAATAAGATAATAAGAAAGAATTAAGAAATAAAAACTAAACGTGAAAGTCCTAAGATAATAAAA---CATCATATATTCAAAGAAGACCCAGGATTCAGGCAATGACAATGAAATGAAATAAAATGggacctggagatgagctgttag
s HiC_scaffold_1 128916070 3371 + 233722169 TTAATATTA--ATGCATGGTGCTTAGTAATAAGAACTTTATTGCTTTTCTCCC-------ACCTCCCTATTCTTG-TGTCCCATCATAGTGGGTGCCCCACCAAGTATCTGC-TGGATGAAAGATGCTACTCACAGCAGAATACA--CC--------ATTTCCCCATTTTTCCTAATGAAGTAGACAACCTCCTGTGAATTTTCATGGTTTTAGCCTTCCCCAGACAAAAAGTACTCGCAGGAAGTCTCATGAAATTAGTTTC--TGGGATCTTAAAGTAAAGCTAGCATGT----------ATTTTAATCATTAGGACGCTTCTAAAAGGAA-ATACACTTAAAACCAAAGTTACAAATTTCAGTCTATTT-AAACTTTAATTTGTGCATTTGTGGTAATTGATGACTGCAAAAAACACTT------AGAATGACACATAGGCACATTTCATTTAAATGTATAGTGTACCATTCTAAAATACCCTAACTTCCTTACAAAGTGCTTGAGCAGTCACATACACATACAGtaatagcaaaatatatttacactcttaaaatttttaatctgactaaaatatatatatatactttaaactACAGAAAAAATTAGTGCTTTCTT---CAGCTTAATTGTGTGAATATACCCTGCCCTCTAATATTTTTAGTGACTGActtcaattaaaaat-tttctgtacaCCGTGTAGTTATAAAATGctatgtcagtttttaaaatgctaaaagcC-ATTGTAGACATTGCTTTCTAGGCATATTTGAGAACCAG-ATAGGTGAGCAGACTGTACCTCAAAagtatttagtgtttcattttaatgctg--ttaatgatgcttaaattaaaactagaaaattatGCT-----TACATCTCAAATTGTCTTTTCTCAAAGAAGTTTAActggcatttaaaaataactttaaataacACATTAttcctctttttaaaagatttttctccaAAAGTATCTTGG----------ATAAT-AATTTTAAAGGTAATATGAATTACCTCTGGACAGTT----TCATTTACAAAGTACAATAAAAACATGTAACAAGgccaaaatattt----ataaatgcattAGGCTCAACTCTTTACAAATT----ACTCTATT--TTTATAAGGAtttaaatttcagtaatttttaagaGATGAGCTCATTGTGATTAAACAGTTAATTCG-GCATGATTAGTTGACAGCTTGTTATTCCTGAGGTATAATGACCCTAACATGCTAAGCGCAGGATCAAAGATCTTATTAA-----GAGAAAACAATTAAGACATGGACTAggagcaaag---------taaaacaaaaccccAAGCAAATG----------GAAAGTCATGATTTGTAAA-ACATATACTGTAAGAGTG-TAATAAGCCACAAACGGATCCTCTTGAAGAATTGTAAAAAGTATTTGatcaaattatttttgagactTTTGAGGTACAGCTTTAgtgttataata-ttttttataaaatatagactgttttatcaaaaatatttatacattctgTTACAATATATTGCTTTTGCCCTCAGTAACTGCCAATATAAAATCTGGATCCAGTGGCCTAAAATATACAAATGCACTTAATGTAAATGCTGGAGTTTGAGGTGTCTGCCTGGCCACTGTACAAAAGTGATGAAGtggtgaaattaaataagaagcCTACATTACAGAATACATTACAACTTTCACATATACATGTTCACAGCATGTATACAATGATAATCCCTACGATTTAACAAAGATACAGCTTGGTTCTACAGCAGACACAAGTACAAATAAACTAGGCTGG--TAACTGTAGAATACATATCAGAAAAGGGGACAATCAG-CTCACTGACT--AGAAGACAGGACTGGACAGACT----GGTGTCTAGACTTTGGGAATGCACACAGGCAACACAGTATCATGATTCAGGCTAATCagaagtcctcagtctaatgTTTTAAGTAAATGCTGATGTTCCTATTT-----CAGCATTAATAAA--CAAGAAATTGTTTGGCAAGTAGCTCTGTTGGAAAGCTATGAGGCTCTGTTACATGGTTGGTAAAGATAAGGCAATAAAGTTTTTTCCAGATAAATACA----ATTTACAAAAGAAGACATcaattcattgt-----------ttaaaaaaaaaaatcaagccaccAAAGGTTTATAAAATGCCACTACACTTTTGATATTATggtaatttcttaaaaaaaaaaaaagagcagttgCCTTAGTCAAACAGAATCATAGTTTTTGTG--AACAGTAATAGCATTCTAAGCTCTAgtgtttgcttttgaaaa---tagTTAAGTGATTAATCTTCCCTCCACTTAAGGCAGGCATTATGGCAAAGATAGGGACTGCAAAga-gtggtttttttcttatttttaaaaaaacagactacTAATCCAAAAGTATTCCTTTGTGGTGGATTTTCATGGCCAAAGTTCATTCAGACTAAGTTCCATGAAACTGTTTCCAGTGCTCAAATTTATgttgaaaaacattgagaaaccACTGTTTAAGAAGGTATTAAAATAGTACTTTTACACAAATCttcatgtgtttaaaaaaaacaaaaaaaactcagaaGCTACTGGTGGCCCAGAGAGCAAATGAACAGCTGCTATTTT-AAGAGGTTTCCTTGTGAGTCGGTCTGCTTGGCTTCACAGTATCTAGTACACATTAACACCAATCGGCGATGTAGTCAAAGTCTCTGAACATTTCTTGCTCCTCTTCTGAAAGTACCCTTGGTTCTCGAGGGGGGGTCAGAATAGGCGCTTCTGAGGTAAATTCATCGTCGAAATTACTAACATCCTCCCGTCCTCTGATGGTAGGGACAAATGGCGGCTTTACTTTTTTGTCCATCAAAGCACTCCAGTCAATTAGctgaatcataaaataaaaaatgccctGGTTAGCCTCCTACTTT------------GTtcataaaccaaaacaaacctaaaCTTCTGAACTTTATCATACTTACCCGGAAAAATGGATGCTTCTTTACATCCTCTGCATCTTTCTCCCCAGCTCCAAGGCGTCGCTCAGGATTTCGTCTTAACAGCTGATATAACGTAAAGTAAAAAAgttaaaaccaattaaaaaaactTCACTGATATGTGA-TCTCATAACTTTCAAAGACTTACA----TTTgttgtaaaatttatataaacTACGCAA-GTTTATGAATTAAAAAACACTTCTGAAGTTc---------------ttcaatataaaaac---atttaagcAGTGGTTTAGAAAAAA-------------TTCTTACCCTTCTCATTATGGAAATGGCCTCTGTCGATAAGAACCTTGGGTACCTTACTTCATCATTTACAATACTGTCAAAAACCTCCTCTTCGTCATCACCAGGAAAGGGAGACTAG--------------------------------------------GAGAAAGTTTCAAGATAGTAAAGTTTTATCATCTATTC-AAGTACATCCAAGATTCaggcagtgaaaaagaaa-acaacaaaatgacgACCAaacaagaactataag

a score=44399
s chr3           142796609 4724 + 160039680 [encoded data, 5618 characters]
s HiC_scaffold_1 128921544 5047 + 233722169 [encoded data, 5618 characters]

a score=4131
s chr3           142799803 92 + 160039680 CCTTCTTTGCAAAGACCAAAGTCAGCAATTTTCACAAAGCCTTCTGTATCTAGCAACAAGTTATCCAACTTCAAATCTCTGTTCAAGATGGA
s HiC_scaffold_1 203631895 90 + 233722169 CCTTCCTTGCACATCCCAAAGTCAGCCAGTTTGCAGTGGCCTTCTGCATCTAGAAGGATGTTGTCCAGTTTCAAATCCCTGT--AAGACAGA

a score=21460
s chr3           142803351 608 + 160039680 CTAAACGTAACCTCAGTTG--TATCTAAATTATCAAGTATGAAATAATGGTAACTCACAAAATTTTCAACAAGGACAATATAGAATATAAACATTAAAAAAATGTATTCAGCAAAACCCCCCAAAATTCTAATACTTCTTA-TAGGGTTTATATTCCATTAGGGAAGAGA-------------AGT-------------------------------TGGGAAGAGTGAGTTAGATGCCTAA----TACTCACACAGCTCTGGGTTCAGAGAAGACATCAGTATGGATGTGCATCATCAGGTCACCACCTGCAGCATACTCCATCACGAAGCAAACATGTTCTTTTGTTTGGAAACATGCAAAAAGGTTCACTAGAAACGGGTGCCTGACACTATTCACAGTCTCAAAAATTCTTTTTTCACACATCAGGCTGTAAGAAAAAAC--------AATTAACAAAACTTGACA---------------------------------TAAAATTTCAAACTTTTATG-------aatttaaaaattataaaaatgtcttttaaaata----ctataagaaatgttttatttaatatataatGTTCACTGAAAATACATTAATAAAAATTAAAATATGCATAGCAAAACTTAAAGATTATA-----CA-AATGACATGAATATAAACTCCTAGCACAAATGGGGCTAATAATTATAATTAAT
s HiC_scaffold_1 128929587 698 + 233722169 CTAAAATGAACCTATACTGGTTAGCTATGTTATTAAGTATGATTTGG-GATAAttcatgaaattttcaaaattgacaacataataaataaatacaaaaa----gtatcTAGTAAAAAGTTAagtaattctaatatttcttacTATGATGTACTTTCCATTAgggaaaaaaccctaaaattcacagtgagctttttcttcccaaaaagaaatcaataatggaaAAACTCAGACAAATGTCTAAAGCATACTCACACAGCTCTTGGTTCAGAAAAGACATCAGTATGAATGTGCATCATTAGGTCCCCACCGGCAGCATATTCCATTACAAAGCAAACATGCTCTTTGGTTTGGAAACATGCAAAAAGGTTCACCAAAAAGGGATGCCTTACACTATTCACagtttcaaaaattcttttttcgCACATCAAGCTGTAAGAGAAAATGCACAAAAAatgaatagtctttaaaaaattttagttgcaaataatatctttaaaaatactaaaacttaAATTCTTTAAGTGCTTcaactttaaaaatcat-gaaatatctTTTGCTATATGTGCTATGA-AACTGTTTTActatatatat-------acctaaaatatattaatgaaagGTACAATACAACTTGTATGCCCTAAAGACTGTAGTGTTCACACTGACAGTATCAGAA-----TGGTACATGTATGGTTATTGGTCATGGTTAAT

a score=6717
s chr3           142808110 327 + 160039680 tcTGCAGGACTACTTTCTAT--GAAGATACTTAGTGGTCTAAAAAAAAAATACTACTAAATATCACAAGAAACCCTTTCTGATAAACATGTCATTTTTATAAAATAATTCCACATATATGTGTGTGTATATGAATATTAAAATATATTCTTGAATTCGATTGT----TTTACTCCTAAAGTCCCTGTGTTTTAATAGCCATATAAAGATGTG--TCCATGATAATTCCCATTATTAGACTCTTT-GAAAGGTAAGGCCCTATACTAAAAATAAATATGATTTAAAAAAACACTAAGTGGAAAACTCAAag--aaatggctcagtcattaagagcactg
s HiC_scaffold_1 128932840 296 + 233722169 TTTACAGTACTGTTTTTCATTAGATGCCTCCTGATGGT-------GAAAGTACTACTAAATATCAAATGAAAGCCTTTATGATAAACAGGTCATTTGTAT---ATAATTCCA--------------TACTTGAATCTTTAAAC-TATTTTCTAACCCAATTGTAATCTTTAATC--AAAGTCCTTGCATTTTactaattataagaaaatatgaatCCACAAT--TTAC----ATTAAATTCTTCAGAAAGGTA-----CTATTgtca----aaaaatgattttaaagaaaaacagaaaaaaggttaaaagcagaatatattaatTATTCAGATAACTG

a score=98211
s chr3           142809241 3194 + 160039680 TATTAAAATTTAACAGAATTATTTTAAACATTTCCCTGTCTTTACTTGGTATC-----ACCAA--ACCTGGCTTAAGGGAAAGAGGTGACTGAAAAGAAAAA-----CAGCATTTAATTAATGTCTAGTTTTGCCATAGA-AGATAAATTTAGCATTATCAAATATTTCTAGGAACTCAGATCCATTGCTGTCTACTC-----TCTCAATCTCTAGCCACAAGGAAA-AACTTCATTTTAAAAAA-CTGACCTGTCTACTTCATCTCGTGCCACAATGTCTCCTTTCTTTAAGGCTTTTATTGCAAACATTTCATTTGTGTGTTTATATTCCGCCAACAGCACCTGAAATAAGAATAAA-TAACTGAGTTCTATTTGAATTTCTCATCCTATACGCTATTTCTACAGTGCTGACAGATTACCTTTCCAAAGTGTCCTCTCCCCAAGACAGCACAGCACCTGAAGTCCTGTAGACTGAACTGAAACCTCTGCTGAGCTCTGAAAC-----ATAACGATTAAAGATGAGGCCATCAACTCCACTCCAGCCACCAGCCGGCTGACGGACAGACGGACAGACGGCGAAGCAGCGTGCCTGCTCATCCCTTACCTCTTGTCATCAAGCTCTCCAACACCCCAGCAGCTTCGACCTGAGTCAGGAATGCTCAGCTCATATTCAGATTTGGATTTTGGACGCAGGTTATTTCTGTCATTCTCAATATTGAAAACAGTTTCTGAACCCTGTAAAATATCAAATGCTCATTAAAACAAA-----------CTGTTAGATAAAAGTCAGAGAATTCCAAAAGTATGAGAAAAAGTTTCA-------------GATTGGCTCATTTGTTCTTATTGTTAAA----------CAAACAGCTCTCCTTC------CCTCAA-GCATATTAT------------------------------CTTCTTCTAA--TGTCTGCAAAACATTGCAT-----TCCTTTTGG---ACTCTTGAATAC-------------AGAGGCAAATGATAACA----------GTCCTCCAACAGGAAGAACGGCTATCTCCTAT-------CAATTT-----CATCTACCTGAGAAAAGT-CACTTATAAAACACAAACATAAAGGAACCAGAAAACCATAAATTCATACTTCATACTGATAATTTTAATTGCAATGTACATGTTAGCCACTATAATGGTTTT------------ATTT--TAAGAAGAACTTATACAAGGAATGTTTAGAATGCCTTGCCTGTCCAGGTATATCCAAAACTCTCAATTCAGAAGATTCATCTGTCTCTCCAAGGGAAGAAGCACGAGGTGGGGCTGGAGGAGGTTCAGGTTCAAGATCAAAGTCCAATTTGGTTACTGTAGAGTCACTTATAGAAGACAAAGCAATTTACCAAAGCTGCAATC--AAAGTCTTTATTTTTATGTAGCTGCAAAATAAAAGCAAACTAACTTCTTTTAAATAAGGAGCAACAGTTCTGCAATTCCACTTGGAAAGACTGAGACT--------GAACACAGCACGTTAGACAT-------CCTAGCAATGGCTATGGAAGATACACTCAAGCCTTCTAAGACAAGTACCTGGCCGGAGGTGCTAGATCAGGAATGCGTGCGTCAACGACTGGCACTGTTGCAGGCACAGGAGTCTGAGGGCTGAATGTGCCAGAATGATTTACTGTGGGAATAGCTCGTCTCACTAGTCTTCCCCAAGTGGCAATATTAATATTCATCTGAGGAGCTCTGAGAAATGTTTTGCCTGTAGACATAGTGAATAACGAAAGTAGGATAAGTAGTTTCTTTATACATTACTGAAAACCATAATTAGGGAAATTCATAATTCATCAGTTTAGAATTTATGAA----GAACAAATTTGTAACTT--AAAACCTAGTTTTTAACTATTTTGTTTTCTATTACAAGCACGTATAAATAGCACAAACAGTTTTTAAAAATAGATCG--AGAGTTTGATTTCTTTTTTA------ACTCTAGTATTACATGTGGTTAAAGTTT----AAG-----TCATCTGTTATGACGAACAAC--------------AAGTCTTAGTGATATATGAGTATGCTTCAAATAAGCTCACAAAGCAGAGTGGATGGGAGATGGTAAGAGTCGTGAGTTGATTATTACTCAAATTCAGTAAAAagtcaggcatggcggtatgtgcccatagtccaagtacttgggaaacggaggcaggggaatcattttaagGACGTCCTTAAAGACAGCACCCTTTGAGGTCACATAGGCTACTGACTGAAAATAAAACAAAAGCACGGTGTTCTGTTATTCCACTTAAGGACGTGTTTCAGTCCTCATTTAAAAATGGCTAGAAATGAAC-AACTAAGAAGAAAGAAAGCACA-------ATTACTTTCAAATTATGAGCTGGATTTTTTCTATAC---ATAAAGTA-----------CTATGCTTAATCCTTAGTAATTACCTTGTTGTTTTGAAAAAATTTTCTTTTGTCTTTGGAGTTTTGGTCGTCTTTCAATAACTGGATTAAAAAAAGTAACCTGCAATAAAGAAAATACAAGTTGCTATCAACACTGTAATGGA-CTATG--------ATTCACTAAAATCTACTAGATTCCTAAGCTGGagaacgtgaaggcaccttagctacaa-tcagtccaaccccttccttttccagatgagaacacagacctagaggagacatgagtttcctcaaggtcacgtccttatgcagcagtgcagccaagag---ctcaacatatctgt------------------------ctctcagcctaacactcttgccatttctacatcatgctgATAACACATACAATTTCTACTGTGGTTATGCACA-TTAATAAAATACATGTATTACCTCTGCAAACAAAGTACCCTGTGGTTCCAAATAGAGACACATGCCATGCCGCTGGTTGTCTAAAAAATCTTCTAACCTCAGAAATTTTACAGCACACAGAGATCGCCAATCACGCCAATAAACTGAAATTTCCAGTTCACGTGACTAAGGTAATTAAAA-----AAAAACAAAAACAAACAAACAGAAAAGACATCATTGGACACACACTTGAATAAATTATCACAAAATATATGAACTACAAATACAATAAACAAATTACACACCAAAGTCACACTATTTAAAACAAAACTTTGTAATGTTTTTAAACTATATATTACTTTTTCCAGT-------TTTAACTTAAA-----------------------------------CTTATATTCAGATAATTTCTGC-TAATGCATTTCTAAAGT---TTCAAGGCCAGAACCCACAGTGAGAACAATCAGT---------AATTACAGAAACTCCTCTTCCATTTAGAATCTCAACCTTTCAGCTTTTTCCTTTTCACATGCCATTGCCTGGTGGCCTAATGCTAAGATGTCTTACTGGGTGCCTCTGAAAACC
s HiC_scaffold_1 128933425 3239 + 233722169 TATAAAAATCTTACAGA------TTAAATGTTTCACCATTTTTCCTTGGTATCCAATAACCAGTTAACTGTCAAAATGGGAAAAAGGAAATGGCTAGAAAAAAACCCCAGCATTTAACTACTTAC--GTTTTGCAAAGTACAGATACACTAAT--TTATACAAT--------GAATGCTCTGTTGTTGCAATATATGCATAACTCTTACTTTATAACTTCAGAGAAACAATGTCGTTTTAAAAAAACTAACCTGTCTACTTCATCTCGAGCCACAATGTCTCCTTTCTTTAAAGCTTTTATAGCAAACATCTCATTTGTGTGTTTATATTCAGCCAAAAGCACCTGAAATAAGATTAAAACAATTATGTCCTAT--GAGTTACTAATTTTATAAGCATTGCAAAAAATTCCAAAAGATTACCTTTCCAAAATGTCCTCTACCCAAGACAGCACAACATCTGAAGTCTTGTAGATTGAACTGAAATCTCTGCTGAGATCTGAAAACAGTAATTTCAATTACAAATAAGGCCAGAAATATAACATCAAACAT----------------------GTAGTAGCAAAAACACTGTACA----CAGTCTTTACCTTCTATCCTCAAATTCTTGAATACTACTATATCCTAGCCCTGAATCAGGAATGTCAGGATCATATACCGATTGTGATTTTGGAAGTATAgtatttctgtcattttcaatATCAAACACAGTTTCTGAATCctgtaaaatattaaatgcttgttaaaccaaagaaacattcataaattaggaaaaaatttagatattcaaaatgaat-----aaagattcatTCTTTTGGACATGaattttacattaatatttaCCTTAAAAACGCAAAATACTAACACATTATCATCAATCATCTTCAATACATATTATAAAGAATGTTTTAGGGTCTGAGGCTATAGCTCTCTGCTAGATTGTGTGCCTAGCAT-GCATGTGGCCCCAgctggttcaatctccagcaccacaaaaaatgaaaaaagttaatGATGACACATACCAGCCATGCTCCTAAAACAATCTATTCCATCTCCTATGGCCTGTCAGCTTGGACTAATTTACTTAAGAACAGttcatttataagaaatatatacatatg----------ccaT-----------TCACAGAGGTGACTTAAATTGAAACGTAGACTTTATTCTCTGTGATGACTTTTACTGCTAATTCATTTGGTAAAAAGGAATTACACAAGG----TTTTAAATGCCTTGCCTGTCCAGGTGTATCCAAAACTCTTAAT---GTAGATTCATCTATGTCTCCAAGGGAAGAAGCACGTGGTGGGGCCGGAGGAGGTTCGGGCTCAAGATCAAAGTCCAATTTGGTTACTGCAGAATCACTTACAGAAGATAAAGCAATTCAccaaaacagtaacagaaaagtATTTATCTGAA-ATAgctttaaaacaaaagcaaactattttgtttaaaaca----gaacttattttaaaatacgaCTTGGAAAAACTGAGACTCTTAGTATAACCActgtatttaatatataaatgtcTCCATCACTGTTTGTG---------CTTAAACATCAT--GACACATACCTGGATGATGGTGTCAGCTCAGGGATGCGTACATCAACTACTGGCACTGTAGCAGGGACAGAGGCTTGGGGGCTGAAGGTGCCAGAGTGATTTACTGTAGGAATAGCTCTTCTCACCAGCCTTCCCCAAGTGGCAATATTAATATTCATTTGAGGAGCTCTGAGAAATGTTTTGCCTGTAGATATtgtgaataaagaaaacagaagaa----tttatttatatattaccaaaagccacaatt-taaaaattcat-atttatcagattataatttatgaaaaacaaacaaatttgtCACCCAAAAAAACTAG---TTAACTATTTGCTATTCAAGTTAGTGCA-----AAATAGCAT-AGtagtttaaaaagtgaaacagtaagaaattgtttctttttttcttaaatatcatAATGATATATACAGTTAAAGTTTCTAAAAGAATCCTTATCTTTTAGAAATACaaactatcatatatatagatGAATCAATGATGTCTGAGTTTCTGTCAAATAATGTGAGAAAATGGGATATAGGTAAAACAAAACTGATCACAAAATGACTATTGCTGAAGCTGGGT-------------------------------------------------------------------------------------GATAGTAC-----------------GCTAC--ACT--------------------------TATCTTTCTACT-----ATGTGtttgaaatgt--ttaataaaatgttagaaagaaatgaactaaaaagaaagaaactatacatggatataactttaaaataataatt---atatctcCTGTACTTAATAAAACACCAAAATTATTCTGTACTTGACTTTTTGTAATTACCTTGCTGTttggaaaaaattttcttttgtctttggagTTTTGGTCTTCTTTCAATAACTGGATTAAAAAAGGTAACCTgcagtgaaaaaaatttaaattgaccTGAAAGTAGCATTGGATTTATGCTCATGAAATCCACTAAACTCCTTAAGATTTCAAAGCTGAAG--------GGAATCTTAGCCATGATTTAATCCAA-CCCTTAATTtctgagatgagaaaacagac----------------ttTTCTCAAGGTCACATACCTAGTCAGTGGTAGGGCTACATGACTCTTTACCT-TCTATCTTAGAGGAGACGCTAAGTCACCACTTTCGGCCTACAGCTCTTTCTACTTCTATGTCATATTGTCTAcatgcataatttcaaaaatagttatgcacatttaataaaatacatttattaccTCTGCAAATAAAGTACCCTGTGGTTCCAAATAGAGACACATGCCATGGCGTTGGTTGTCTAAAAAATCTTCTAACCTCAGAAATTTTACAGCGCACAGAGATCGCCAATCACGCCAATAAACTGAAATTTCCAGTTCACGTGACTaggataattaaaaaaaacaaaaacaaaaacaaaaaaacagaaaagacatcaTTGGACACACACTTGAATAAAGTattacaaaaaatatgaaatacaaatagaGTAAACAAAGATAACACAAAgatcacattattttaaataaaattttgtaatttttctcagCTGTATATTACCTTCAAAACTTATACACTTtaactaaaaaacaacaaaacaaaacaaaacaaaacaaaacaaagcttatATTCAGACAGTCTCAGAGTAAGGTATTTCTAAAACACACTTGA----AAAATCTAC--TGGGAAGAACCAGTCCAGATGAAAGATCAGGAAAGTCAGCGCTCACACAG--CTTCAGGCTCTCCACTGCCCTTTCTCTATGCACCATCGCTTGCTGTGCTACTGCTGAAACA-CCCAGTGCTTGCTTCAAAAAACC

a score=37449
s chr3           142820166 1744 + 160039680 ATGTGACTTCACCACTGCAACATTTCTAGTTGATATAAACTACACATTTTCAAATTATTGCACATTATAGCTATTTGCTAAACAATCAGATATATACCTATGTATTAAAGACAAATTTATGTACAATCCCTCAGATGAGAAACATAAAAAATATGTACACACTTCTAAC-------TTTATAAACTTCtggcatatgaatataatactgcaggatctctgaggtagaggc--cagcctgacctatacagggaggtccatgcttgtctgagcatttagtgagaccctgtctcatcacaaaataaCAACAAAACAAAA----CTTCTAAAAGAC-----TTCCAATAAATAAAAA---TAACACTAAT-----TTCAAGTAAGAAGTCCTGAT-CTTACCCTGTCTAGTTCCAGTGTAAACTTCTGGTCCCACGACTGATTTGAAATGGGTTTCCAGCTAGTTTGACCAACCACAGTATTATCTAGCTTCAAAACAGCACAAACATCATCTGTAATTACAATTT-TAAGTTGGGTTAAAAAC-------------------------------TTTAAA------------CTGTTAAAAGACA--------------------------------ATTATCACTAATT------------------------------TATAG-----------------CATGAAGAAA---CTGAAGACACTTTGAAAAGGATGTTTTTATAATCAATATTGAACTGTTTGTATTTTAATTGGCTTTCTTTAGTATCAATGAAATTATCTATTGGTTTTGATAAAA-ACAAACACTAAGTGCTATTTTGCATATTTAAGAATGTATCACCCATCCTGCTTATTCCTGTATCTACATTAGTCATCTATTGTCCTCTA-CTGAGTTTGTTAGATAGAGAACTTACTGCCTCAAATGATTCTCACTTTTATTCCTCTCCCATTTTCCCTCTAAACACAAGAGA-----------GCTCCTCCAGA----ATGCTGCCCTG-----TCCCCTGCCTTCCCTCCTAGTTGTATGTTTAGGTGTGCTTTATTTATCAATATATACGGTGACATCCTCAGCATGCTCCTAAGCCTTACTCTTGCTTTTCCCAACACCGACTGCAGCCCATCTCAAATGCTGTCTAT--CCCAGCACATATCTCATTCACTAA----CAAGTTCAGTTTTTACTGGTCACCAAACCATTAAAACAACCAAGATG-GAATCTACCAGGAGGAAAAATCTCAGTGTCTACAGCTCTTCATTTTGGTAAAAAGAGTGATATTCAGGGTTTCATTCTTTCAAATGTTTTTATTTATCATGTAGTTTCATTCATTTTTAATAAAGTAAAATACGTTTTGTTTGTTTTTTTCCTACTAT--AAATTTTAAAAAT------GTAAAATAATGGCAATTGAGCTCT--------TTGGTCCTGTGTGGACACTTCCCATTTTGCCT-GTTCCCATGAGAAGGCCCTTCGAATGTGTGGCAAGA-CTTTAAAAGTATGGTTACTGAACTGGACAAGTCATCCGTTTTCAGGAGGTTGCGACTACTCCCACTTTTACTCTTGCTGGTTCTGCTCATAAAAGACGATCTGTTGTCACTTGGACTCCACCCAGGTAGTGCTACCGACGTTGCTTTTGACCGTCCAGGTACATTCTCTAGGATATCTTGGCACCCCATAAGACGAACTTCCAAAGTACCTGTTAATAAACAAATATACAATAAGAAAAACAA-TCGTGATATACAAAGTCGTGTCTGTTATCTGTTCAGAAAAGGAAAAAGAGGATGA--------TTTGCTAATGTGACAAAAACTCTTTGTACAGAGAATCTGTGAGG-AAAGTATGACCCTTCTTAAGCTAAACAACTGAAAACCCTTAATTATGTCAACAGCAACAATTTCTATATAAGA
s HiC_scaffold_1 128951914 1805 + 233722169 ATTTCATTTGGCTACTACAT--TTTCTAGTTAacataaattatacattttcaaATTACTATACATGGAAGCTACT-GC------ATCTGACATTCAGCTGTATCTTAAGG-CACATTTATCTATAATGCATCAGATGAAAATTGTCAAGAATTTCtaaattcttctttcatttttcttcataaaatttaaggggctggagat---------ttatctcagtggttcaagcacttgcctggcaagtgcgagg--------------ttgtgagttcaat----ccctggt--accaaaaaacaaaacaaaaacttaaatgtCTTCTAAAAAACACAAGTTGCATTCAATGTAAACTGTAAGTCTaatgaaaatgtaagtaaaaaatTTTTCCACTTACCCTGTCTAGTTCCAGTGTAAACTTCTGGTCCCATGATTGATTGGAAATAGGTTTCCAGCTAGTTTGACCAACCACAGTATTATCTAGCTTCAAAACCGCACAGACATCATctgtaattaaaatttataaatctgcttaaaaatacaaagaacgcTATTATGaacaagtcttttttttaaaaaaattttttatcttttgtgagacagggttttgctatgcagctcaggctacccttgaactggcagcaattctcttgccacaacctcctgagtgctaggactaaaggtgtgtgccaccacacccatcaACAGAAGTCTTAAaactccttgaaataaaatttttcataat-aatattGAAGCGTTTCAATTTTCCATGCCCACC---AGAACCTCCCAAATAACCC------TTTGATACAACACAAGTAGTAAATGCTACT---AGTGACCAGTACTTTGCCACACTGTATGCTT--TCATGTATCAGTATCAATTAAGTCTT--CCTCTAGCTACATTTGTTATGTATCAAATTTGTTCCCTTA--CCGTTCT---TTATGTTTTTCCCAAAGCCTCTCtctaaacacaggaaaatgcaaaagaagttcCTTTACACTCTGTGCTAGGTTGAAGCATTGCCTGCCTTTC-Tcctacatttatatatacatata---tatgcatttatatgta--GTTTAATTATAA---------TAAACCAt----ttgcattt----------------------------tactttctttggCCCAGTAC-----TCAATTATCAAAATTCAATATTAGTTTGGCAGTGTCACTAAACTattataagaatcaaaatgtgatTCTACAAGAA--CCAAATCTCAATCTGTGTA--TCTTCTGCTTGGCATAAAGAATGAGGCTCAGTATCTAATTCGTTCAAAAATA---ATTCATCATGCA--TCCTTGtattataaataaagtaaaatc--tcttgtctttttgttttctatcattAAAAGTTTAAAggttttcaaattaaattatagaaattataatttaaaagatttCTGTCCCACTTAagtgtttttcattcttctttgtccCCATTGGTAAGTTCCCTTAATTTGTTACATGATCTTAAAAAGTGTGGTTACTGAACTGGACAAGTCATCGGTTTTTAGAAGATTTCGACTACTTCCACTTTTACTTTTACTCGTTCTGCTCATGAAAGATGATCTGGTTTCACTTGGACTCCAGCCAGGTAATGCAATCGATGTTGCCTTTGATCGTCCAGGGACGTTCTCTAGGATATCTTGGCAGCCCATAAGACGAACTTCCAAGGTACCTGAGAGCATA-AAGTAccaaaaaagaacagcaagtcttAATATACAGAATTGTGTCT-CCgtgtttcaaaaacagaaaaaacacaaagacaaaaaaccctgttaaaat----aaaacttttctcctagAGGATCTGTGAGGTTAACTATCAACTTTCCTG-------------------TTTTATTGTGAAAACCGTaagaaattttacagaaaa

a score=31940
s chr3           142822984 2126 + 160039680 ataatacttaaaaaatGTTGCCTTGCTGTTCACATTTTAAACAGTACA---AACACTTCAAGAAGACTATTTAGTAAAACTGTCGTTATACGTTTAAATGATTAAATTTAATATT---TACAGGTTTTAGTTACTAAAAAGAAACTGTAAAACTTGCATTTCTAAATAAGAAGTAGGAGCAAAGCTCCCCAATTCAAACAATTAGCGAaaaccaaaccaaaccaaaacaaaacaaaccCACACCAAGCAATCAAAGCAAGCCATGGAAGTGTTGAaagacaccaggtcacaggcagtgagggtcagtggtccctgaaggatgagaaacaagtcctaa---cttaggctgatcctatgatggtcccaAG--ACTTTCTAGAACATGCTGCCTTCAGCGGAATCCAAATCTT------------------AAGGAGGCCAAGACAGCTAGAGAT---------------ATCCTTAGA-----TCTCCATGTTCCTT--------TCTGTCACAT--TCACTCAGgtactagccagc-ccgtctgagaatgaaatactagaggcagggaaggagaccttaagaaaagactagaaagaacaacactctctatatacatgtaggaacagtgat------cccaccaaccacaactgaaaaaacctctaattcacagcacactacagggagtattcagaaagatttgtgttacaatagtaaaagttaattactcccac--atgacaatcttgtacacaga-gaccctaaaaattatacatacaacatcaaactcttcctatgtagctgcaccctagaacaaagctaagaatacttacttggcaaggcaaactctgcaatgcctgccagccaatcaaagattatcaggtgagtttgttttgtatcactacattaaatattaacacataatgacttaataagagacttgaagtagatgtcacagttagcagacaaggacatcaaaatagttacatctatattccatctgttcaaaggttgaaaagagacatcgaaga----aatgaaa-----------aagttccaaag---------------tacaaaatttcta---------------------------------------------------------------------------gagacaga----------------aaggacatttgtctaaaatttaacaattatgc---------------------------------------------acttgac----------------------ggac---ttggtggctgtttgagcactgcaaa-agaaaaggttgcctgacttaaagacaa--------tagcatcag----aaaGGATTAAGA-------------------------------------------------------CACCAGGGAAA----------------------------AGCA--------CTACCCA---------------------------------------------------------TATGTGAATTATGATTTGACTTAGA-----ACCATGTAAGTTCAACTGACACTTTTGATAAAAAGCAAACAAAAAAGGAAACAAATAGGTATTTTTAAAAGTTGGCTTAAAGCTCTCAAAATTTTATGAAGCTC-------ATGAATACCAAGTCAAAGAATT----GTAAAGTTTATGTTTTaatttttcaaaat--gtgataaacagaaaacactgcaggcagca-agaaaataacacc---acatacaggagaacagcgacgaggataacaggagctttctcatcggaaacaaGAGCAAAACCACATTC----AATATGTATATCTGAT-----GCCTAAAACCCTCCTGTAATACTGTCCTAAAAAGTGAGTACTGATCACAATGGTACAAAGAAATGTATTTCCTAAGAAAGCCATTAACCTGTGTACTTAGGACGGGTGAG--CCACAGACT---AATTA-GCAGTAGCAGACTTGTTA--GGTGGGAAGAAGAAC-AGTCTCCATCTCTGTTCCCAGTGTGTTAGGTTGTGGA------------------------------------------GCAACGAGAGAAGCTTAAGCAGAGTGGCTACGCTTTCTCTGTTAGTTTTAAAGAAACAACTTGTTGTGCTTGTGTTTTATTTATACTGCTGTTG----TAA--TAGCAAACTCTCCTTATTTC--CAGTAAATACTCAGCTGTAAAAGTT-TCCTGGGGAAACTGAAAACATCTGGTTACTCCTTCAAATCCTGGTGGCTTATTAAATATTTCATTAATTTCCATCTATCAGGACATGACAATGCTTACCACCTGCTTTCATTTAGGGCAAAAAATTCCAGAGGGAGTTAAGATCTTTATTAAAATATCTAGAGGTTTTATTATTTTATGAGATGGCATAATTACAATTGCTTATAACCACATTAGAAATAGGGTAAAACTGCATAATCTTCACCTTCATAAACCATAATACAAAA-ATGTAACACAAGTGAATCTAAGAACTAAA----TGTATTCATAAGCAGTAGCCATGAATTCTATTAGAACAAGTAAATACTTTTT
s HiC_scaffold_1 128954181 2486 + 233722169 acaagaattaaaaa----tgttttagtatCAAAATTTTAGACATTGCATATGACATTTTAGGAGTATTTCCTAGTAAAGTTGTC------ctgttaaataaattaaaataattttccttaaggcttttaataattaaaatataactgaAGGAATTA-GTTTCCAACCAAATAGTAGTAA-AAAGCTTCccaattcaaacta----aaaatatcagacgaaatgtattttaaa-------------agcaat-----------------------aaagaagTCTGATGATAAGCAATGCAAAGCAGTGATCCCCAA-----GAGACAGGAGCCCTAGGTGCTCTGGCTTATTGCTCTAAGTCTCCAAGCCACAGTACAGAA-AGGAGAGCTTAGGTAGAACCAAGCTCTGGAGACAGAGTTAAGAACAAAGGAAACTAAGGCAGCTAGAGCTCATGGGCGAAGAGTTGTCCAAAGacagaatttctgggatctttagaAAATTTCTCCCATATCTTCAACAAACTATTAATCAGCAcctgctgggaaaaaaaaat--gaggcaaaaaa-----ccCT--GAAAAGATCAGAAAGAACAATACTCAGCATAGA-AGGTAGGAATGGTGTCTGTGCGCGCACTGATCGAGA---AATAAAATCCTGATTCATGGGGCCCTGGAGGGAATGCTCTGCAAGAATACTGCTCCAGCAGTTAAGCTCAACTACTCCTAGGGATGCTGCTGTTACATGTAACTGATGTTACAAGCAATATTCAAAAGGTCAAATTATATCCAAGTTGTTTCAC---AGAAAAAGCTTAAGAATAtttacagga----ataaa------------------------aaaaaaaatcaggtc--taTCTTTTCTACTGCTG--TTACaaattaatacata----tttaat----gGTCTGAtacaaatgttaaaatttataaagtaggattttTAAGCacctattaaaatatttcatttgttcaaCAGTTGAACAGAGacatggaagagaaaaataaaagacttaaacCTAATTTCCAGAGATGATAAAGACAATGTCTgagatttttattgtttgttttgtggtactggagattaaatctAGGGCCTTTGCTCTAAGCTACAGCCcctgcccatttttattttgagacagggtcttgctaaattgttaggGGGTCTAGTCTAGGATTAAACTTGTattccttgtacctcagcctctcagagtattgggattacCATCATGGTTGACTTGGCTGTGATTCCTTAAAAGTCCAGGGAACACATTGGTGGCAGGTTAAATGTTGTGGGTAGGGGAGAGTG---AAGTTGAaggtaaaacaattttaaaaacaggacaaaagagTTGAGAGtaaaaaaaccatatatatactGCTTGGAGTggcggtacatgcctgtaaccctagcacttgggaaattGAGGTAGGGGctcgctgcaagtttgaagcaaacctgggctacctagtgagttcaaagccagcctgaactacacaaagaaaagacaaaaacaagactAATGTATATGTGAAT-GTAATTTCAAATAGCCTTATACTGTATACGGT-AATTAAAGTTCCTGATGAAAAGCAGACAATAGGGGA--CAAATATACAT-----------GGCTAAGACTTCTCCAAATTTGGTCAAGCTATAGTTGAATGAATATCAAATGCAAGAAATAGAAGTAAATTGT---CATTAATTTCTCAAAACCAGTGATAA--------CACTAAAAGCAGCACAAGAAAAAGCacttttaaatatacagaaaCAAAGATAAGAATAGCAACAAAGTTTGCACTAACAATGGAAGCAAGACTTCATACTTTAAATACATGTAGTttattatttgtcaattataCTTCAAGAAAATTGCCCTAAAAA-TGGGTATTTGCGACAAAGGCACAGTAATATatacttat-----aaaatataaaactac--actTAAAATGGGTAATTTCTACAGAATGTAAATTATgcctcaataaagctgttaaagATGGGAAAGAGGGTGAAActtgaatctttttcattttttgtcagGCTGTGGAAATCTAAAGTgctaaatctaaatctaaagtGCTAAATCTAAAGTGCTAAGACAAA-TTAAATATAATGGTAACATTTTTACT-TCAGTTCAAAAGAAATACCttgttatgtttgtgttttatttgctttccTGTTGATGGTAAACTGGCAAACT-TGCTTATTTCTACAGTAAAGGCTCAGCTGTAAAAGTCATCCTGGGGAAACTAAAAACATCTGGCTACTACTTCACACTCTGGtagcttattaaatattttagtaatttcAATACATCAGAACATGACAATGCTTACCACCTGTTTTCATTTAGGAAAAAAGCATCTAGAGGGAGTTAGTATCTTTATT-AAACATctacaagtttctttcttttatgagGTGACATAATTGCAACTGCAAATAACCACATTAGAAATAGCTTAAAACTACAT--TCTTTACCTTCATAACTCAAAATacgaaatttttaaaacaagcaaaTCTGAGAACTAAATGCTTGCATTCATAAGCTGTAGCTACAAATTATATTAGAAAaagtaaatgcttttt

a score=49629
s chr3           142828827 1908 + 160039680 TATTAATCCATACTCTTATATAATCAAAACC-------AAGACAGTTACATTCTACGCACCGGTTAGCGCCGCTGGCTTGGACAGTGTGCTATACTGGTTCTGCGTGGACAGCATGCTCTGCCGTGGACTCAGGGTTGGTGACGCAACCAGTGAAAGCTCCTCAATGACGACACTGCTTTTGGGGTGATTCCTGGGGAGCTCATTTAACCTTTGCTCTAGTGAATACTTTAAAAGGTCCAACTTCTGACTTGATTCATTAAATCTCGCTTGTGCCTTGTTAGGAAAAGAGATATTGTTGTCATTTAAGCCAGGATATTCTTCAAATAACA----TAATAAACGGCTAAAAATTGTTTTTAAAATTACTTCTGAAAGCGCTTTTCTGTCTGTTACTTTTCCTGAGCCAAGTAACTTCATGACATTCTTTGCACCTTCGGCTACTGCAAATTCTATCTTAAAATGATGTCTTAATTCTTCCATCCGAAGCTCAAGAGGGCTTATCACAGGTTTTGCTA--GGAGAAAAAAGAAAGAAAATTTACTATTAATTGAATCATAATTTAATGTACTGGTTAAAA------AAATCAGGAGAAAGAAATGAAATATTGATATAACCACAATAGT---------AATAA-----GAAATAAA--------AGGTTAAAATATAGAATGTTGTTTTAGCCAGCCATTACACATCTAAATCACACATCTGTCAA-AAGGCTTTAGATCTGAGGATACTGCTATAT-ATAACTTAATGAGATAGAAACATAGTGGATATCCACACTAGCAAAT----AGggacacaaccacccctggaacaa-agtgtttgaaggaaacaccgagtctgtactgataatgtaagacttttgttcttgtcaatatt-tcctaaacagta---taacaatttatatcatgttttcattgcactagttatgataaccaacccccaatgacttaaaagtatatgagaggatacacaaatattctctgcagatattataatttattccaatt--------acgacttgagcatccatagaactggggatccactagggacctgaaccccatct---gaagatactgaaagacaattgTAGTTTCTGGCTCTACTTTTAACAACTAGCTCAAA--AGTCTCATTGGAAT--aaaaataaaaaaaaaaaagaaagaaaaagaaaaaTGCTAAACAAAAAAATACTTTTAAATAGCCACCCACTTCTTAAAGCA--------------TTAGGTAAAAATATCTGACTG---------------------------CTTATT--------------------------GAAATATAGAAATATGTTCT----ACATATGAAAGACAAAGGGCAAATAGC------------------TGAAAGCAACC---------ATCCCAAGTAAAAGTAAACAAAACCTCCC---AAACCGAAA--------CTTTTCTTCCCCTTT-----------------------AACCCTGCGTGATTGCCTC--GTTTCCTTTTTAAAAGTTTTTTTTTTTTTAAAGAtttattt----ttccattttatgtgtgtggattttttttttttttgcttgcatttatg--tatgtgcatcacatgcatgaatggtgtccacagagggcagaacgggtctcgaatccctgggactggagttagagatggttgtgaactgtt-gtatatgctgggaa--------tcaaacccag-----gttctctgcaagagaaacaagtgcttttaactgctaagctgattctcttgccccAACTGCCTCTTTTTTA-ATGACATTTATTTAGCACCCTATGCTTGTAAAAGACAAC--AAAATTTAAGTGTACTGCATCACCATTATCAAAAGCCAGCTCATTGGTCTGGACGGCCTGAAGAATCTGCATCCGGATGACTTCTATTTTTGTCTTGCTATCCTGTAGCAGTTGCTGCGCTGTACCATGGAGTTTCCGATCCTATCAAAAATGAAAAGGTAAGCAGAGAAAAGGATCACTCTTTCTTCTATTCTGAAAAGATCAACCGATAACCCAGCAATTGAAA--CGGTTAAAAGAACTAT-GCACAATCTAAGAATAATGt
s HiC_scaffold_1 128965328 2027 + 233722169 TATTAATCCAGAACCAGATAcagacaaaacatgaaaaaaaaatagctgcaTATTACATACCTGTTAAAGCTGCTGGTTTGGACAGTGTACTGTATTGGTTTTGTGTGGAGATTACACTTTGCCGGGGACTTAGTGTTGGTGATGTAACAAGTGAAAGCTCCTCAATAATAATACTGCTTTTGGGATGATTCTTGGGAAGTTCATTTAATCTTTGCTCTAATGAATACTTTAGAAGATCCAACTTTTGacttgattcattaaatcttgcTTGAGCCTTCCAAGGGAAAAA---ATAATTGTCATTTAAATAATCACACtctttaaataatacatttaataaacaaactaaaa---tatttaaaattacttctgAAAGTGCTTTTCTGTCTGTTACTTTTCCTGAGCCAAGTAATTTCATTACATTCTTTGCACCTTCTGCTACTGCAAACTCTATCCTAAAATGATGCCTTAATTCTTCCATTCGAAGTTCAAGAGGGCTTATCACAGGTTTTGCTATtggggaagaaaaaaacaaa------cattatttgaacc---atttatttgactttttaacaTGCAGTgattgaaaactgaaaaataaccaTTTCTTATgacattaaaagtttaaaaatcaataaatactgaAGTAAAAGAGACACAGGTTGAAATGT--AACGCTTTCCATTTTAGCCATTATATAGTGAATTAACAAATCTACAAATAAGAATTTAGAACTAAAGATATTGCTATATGATCAC---ATCAGACCAAAACACAATTGTTCTCTGTATCTGCAGGTTCAAGATAATCTGACCACCTCAGAATTAACAATGTTTGGGGGGAACAATGG---CCTCCTGACA-------ACCTTTTTCCCTGTCAGTATTCCCCCAAACAATACATTAACTACCTGCATACCACTGACATTGTATTAGACATTACAGGTAATC------AATTTAAAGA-----GTGAAGATG-GTATATATTATGTGAAAGTATCAGaccattttatacttttatataaaGGACTTATGTATTCATGGATTCTGGTATCCATCAGAATCCTGGAACCAATCTCCCAAACATACTGAGGGATAAGTGTAGTTTCTGGCCCTACTTCTGTCAAATACCTGTAAGTATTCCTTttggaattaaaaaacaaaacaaaaccagaaag-----------------gcAAAACAATACTTTCAAACAggcaacagatttttaaaaaacaattagaatttttttaaagatgaatacATGGCCAAGTGTAGTAGTGGCTCACATCTATAATCTAATTTGGGGCTGAGGCAAAAGCTTTTGTGGAAAATTTAGCAAGGCTctctctcaaagtaaaaaatttaaagggctgAAAGCAGCAGTACTTGCCTAATATGATAGAGGCCCTGGCTTTAGtctcaagaaaacacacacacatacccctgtaaaactaagaaatacattcttgttttcctcctttcttttgtggtactggaaaatTGAACCCAGGCTCTCTGCGTTGAGCTATATTGCCAGaacttttctaatttttgaatttttaaacaaggtctcactaaat---cgcTAAGCTGCCCAgtgtgggcttgaacttgtgatcttctgccCCACCTCCTAGAATGCTg---acatgcactaccac------------------accagactaagaaata--tattctttatcagtATCTTCTTGAAATATGAGGGTCAAAATCTGAAAGTGTAATATTCAAGATAAAACAATAT-----AGTGTCACAC----TCTCTTAATTTGAAGCACTCTTTCCTATGCAACACTAAGTCAACA--CTATGCTCATAAAAGAACATTGACAGTTTATGTCTATTCCATCACCATTATCAAAAGCCAATTCATTGGTCTGGACTGCCTGAAGAATCTGCATTCGTATGACTTCTATTTTTGTCTTGCTGTCCTGGAGCAGCTGCTGAGCAGTACCATGGAGTTTCCGATCCTATTAAAA--------GTAAGTTTGAAAAAA----ACACTTTCATATCTTTTAAATAGATCAGTTGATATATCAGCAAGTGAAAAGCAGTTAAAACATTTGTAATGTAATATAACAACAACAT

a score=30632
s chr3           142836628 3405 + 160039680 TTTTTAAGTATCAATTGCTTTTCAAATTCCTATGTAAAGACATAAAGGATTTGTTATGGCACTTCAGTGATTCTTCTTCAGG-----TTTGCAGTCACTTGCACAA---------GCCACTATTATTATTTCCAA---------TTCTTTATGCATGCTATTGCTTTTT----------------TAAGACAGGTTTTCTGAGAGCTTATATCCCAGAACCTATCATGAGTATTAAACT---AATTCCTC--TCAATACTCCACATAATTTCAACTCAATTTTATCTCTAATCTCATAAAAATGTA--CTTTGATTCTTTAAGAAGTTAACAGTT----AATATCATGTCTAGACAGAAGAAACATGTTAAGACTGTCTTGGAGACTACAGCAGTTGCTAATAGGCTTTGGTCTTCTAATTAAGTACCAT--CAATTATGTGATTTCCTAATTAAAATTCAAAA----------GCTACTGGAATATTAAATATCTGTCTTAGCACTATGTTCACAGATGTGTTTAGTTTGGACCCATGGTTTTTGTAA-----TTTATCCATGTACTTCTTTGATTTTAGTGTGTTCATAACA--GTTAAATTTAT--CAGTTCATCCTTAGTCTTACAGGTCTCAAAGACAACTAGTAGAATACAATGGAACTGATGGCCCTTTTATCCA---------------------CACTTCG----ACGTTAAAGGGGTCCTAAACCCCTTAAATTAACCTATCAACTCGAGACTTTAAAAATATCTTATGACAGATAGCACTAACTGGCTTAATTCAATATTAAAATGCTTGCCATCATGTAGCGGAA---CACTCACAACAAC--CTTTGATAAAAA---TAAAAAACT----TTCCTATAATAAAGTACAAG--AATAAAACCAagctagatacattagcaaatgactataaccctagtacttgggtaggaggattgtggatctgaggccagtgtatgctaaatagtgagacactgta--tcaataaagcaTTAATCAGAGAA-GACTTggtgaatgcagagatttgtggttcctaaaaatgctaagagccag---tggcagttgagtgcttattgctaaccaagacatctatataacaGGGG----AGCACTGTGGAAGGTGGGGTGTA--CCGAAATGTAATAACAAG---AAGACAGACATGAATTGTCATCTGTGAGGCAAGACACTGCCTCTGTAAACATAAATCCATATACACT-TTGGTGGCTCTAATAGATAGGCCTGTCAATA---GACAGGCGAGGCTAAAAT---GCTCATGGTCTTCTCCCTGATGAG-------------CTATCTA-TTGAACATTAGAAGCATACTCCACTAAGTTTTTAAAAT-----GTTGTTA-ATCTAGCT-----AATTTTCATAATTAACGTTAAAA----------CCTTACTTATGCA--------CATATTCTTTGTTTATTGGAAGAGAGGGCAGGAAGACATTAGGAAATCATCCTTTTCCCTTTTGCTTCACATTCTTTCCAAACTGGAACAAAAATAAACACCAAAGAGCTTTTATTTTGAAGTTTTAATATCTAATatatggatgcctatatatgtatgcatatatatatatatacacatatatatatgtgtgtgtatgtgtatatattatatacatgtatgaatggatatatataaacacatgcaAATAAAAATACTggggcagagagaggttttg-atg--tgtaaggatacctgctgccaaaatctggtgatctgagttggatccctgtaactcacatggtag---agggtaagagctaactcctacagtagtcttgtgacctccacaatcatgctgtggcatgcatgcctgaacacaaacacacCATACACAAAAATAATACACACACACCTAAGTTTTGAAAAATGAAGAAACACTGATATTCATAGATAAGAATGTTTAGTATAACTTGAGATTAGGTAGGTAGAGCTTATAATAAATGCAC----CTCAGA--TTTTCAGAACCATAAAATCTATGGAACCTTATGTTGGAATA---------------TGGTTCAGTGGTCCCTAACATTTTGTTGTCCTGCCACTGTATATCTGCAAGCACATGTTC-TCATTATGAACTGCT-CCCTCAACACTGATTGCAA-ATGGTAGTTACAGTAACAGTCTGAA-------GAATGTACAACAGTAAGCCAGTAGCGCAAGTGATGCTAGGATGTCAGCTTTCATTTGCCCTTTCCCAGAGCCTGCTTGGTC--GGAAAACCCATTTTAGCCTAGACTTTTTTTTGTAAATAACTTTT--GTTTTGGTATAATTTTAGGATTATAGAAAAGTT------ACAGAGAACTCCATGTTCCTTATCCAT-------------TAATTAGGTTTTGAGAG-ACTATGCAATTTTTATACTATTGTTTTAAAAACATTTCTATTTTTTGTCTATATTTTCCAATTGTGCAGCTAAAATTGTCTCAGGGTCACTAGAACTCTAaacttaccaactgaaaccataaacatgtgaaaaatggagcactacatggaatgaaaacgactcccatttacaccaggagagctttggaaggcaccaatcacctgctgacattagcagagagctcggattgccagacaaaccaagtccagcaccctgaaaggctaacaatgacagtcaaattactcctatttcggatcctgggatgacaaatgaaattttagggggtaggcaaactcatatatacggaacatataaatactagggatT---------------TCCTTACCTTTGAAGAGCCATTTGAGTACATCTGTATCATGTTCTCTGCACCCTGCTTTACTTTAAGTTCTATATCCAGTTGTTTCTGTAAGGCCATCAGTCTATTGTTGCTAGTAGAACTACGAGAGTCACTATTTGGAGTATCTGGAGTCCTCGGACAATCTGTGTACAAAATATCACATGATTGTTACTAGAATCAACTGTTGCTTAAAACTGGGATGTCAGGGTGAATCTGACCAAAATATGTTATCTGAATGTGTGAAAATGGCACAATAAAACCCATGATATCATACAATTGATATATAGTAATAAAAATTATCATTGAAAACATAATGTGTAAGTTAATGTATTCAAAAAACAAGAGTTTGAAATAAGTTTCAAGTCACTTAAATGAAATCTCCTTGTGCTTACAGATAAT-AAAGAATTCAACCAACTCAAACAAAGGAACTACTTGAGTTGCAGAACTACCTTAATTCAGCTTACTCCCCACAGAAGTGACCATTTGGCGCCtggcacagtat--aatccctacacataggaggctaagatcaaaggatcattacatgattaaggccagtgtgggctatttggtgaatttgaaaccagtctgtggtaagatgagTTATGCCTACAAGGTTTTCAAATACTACA---TTTAAACTATATACATTTAAACACAATCTGACTATTCTATTCAATAACTAAATTCTCCCTTTGTCACATTATTGATGAGAATAAAATATGCAGATATCACACACCCTTTGTCACATTATTGATATGAGAATAAAATATCTAAATATTACATAAA-TTCTACCCTGGTAATTCTCTACAAACAGAA
s HiC_scaffold_1 128974607 2953 + 233722169 TTCTTAAATGGCAAATCATCTTTCAGTTCTCACATTAAGACTTAAATGATTTCTTCTGGCAGTAATGTGATCTTTATTCAGGGTGTTTCCAAAGTAACTTAAACAATTATATACAGGCAGTATTTCCTTTATCAGACAGTGGGTCTCCCAATGCAAGATACTATCTGTTGAGTAGCAATTATGAATAAGACACAATCAC-----ATTTATATCCCAGAGCCTAGCATGTCTATTAAACTGTTAAACCCTTAATGAGTATTCCG-ACAATTTCAATTAAATCTTCCCT---ATCTCATAAAGATGTATTCTCCATTCTTTTGAGAAGTTTAAAGATGGGAAAtgaaaactgaagacagaaacAAC-TGGCAGGTCTACCTGAGAGCCAATAGTAACCTATCATAGGCTTCGGACTTCCACTTGAGTCCTTTGCAAATTAATCAATctccttcttaaaaataaaaaaaaaaaaaaagttacaggaaAATTATGTACTTATTTTAGCAGGATGT-AACAGCCCTGTTTATTTTGAACCTGTGTTTACTGTAACATCATTTATCCCCTT-TTTTTGTACTTCTAGTGTATCTGTAACTCTGTTTAATCTAGAGCAGTG-GTTATTAATCTTGTGGGAATTAGAGATCACTCTAAGAGTACAATAATACTTATGGCCCTCTCCTCCATCCAGTTGTTATACACACTAGCTCTTCACATAACTTCAAAGAGTTCTTAAATTCCTCAAAGTAATCTgtcaatattaaatttttaaaa-accttattaCAGATGGCAGTAAatagcttaa----attttaaaatagt----gtcaAGTATTACAATCTCAATTCCAATAACAGTTTTGTTAAAAAGTCCAAAAATATGTGCTTGCTTCAGCAGTATACATACTAAAAagtccaa---aaatattttataaaactaaaaaatttccaaaact-------aaaggtcatta--ctaaaaaaaaaaaaaaatacacagaaaataactGCCATTCAACAAAG-GTTAGTGAAATAATGTCCTAAAAGAAACAACAATATACT-TTTCTGGAAGCaacaaaagccaggtgtggtaactatgcctataattctagc----------attcaactgaggcatgaggattgc--aagtttgagactagcctgggctaaaatagtgagttcaagatcttCATGGGCTATTTT---------AGGAATCTGTcttag--aatataaattaaaaaacagtagCAATTCCTCTAA-----AACTCTTTTGAAATATGACA--------TAAAATCtagctttcttttttatcggtactgggatcgaactcacgactgcctgcttgcaaggcaggtgcttatgccgctgagct----aaatccccagtccccacatCTAGCTTTCttaatcttaaaaattttagttagaaaacatacatatttctctttttcagtatCTTCCAAAGTTTTAATATGGTGGGATGCTGTGATGTATGACTTTATGAA-------CTTTCCctgat--ttcaaattttttctaCCATGCAACAAAAATATAGtacaa----cttttattttcaaatt-----acttaAGACATA----CCCACGAAGATATGAAGAAGCACTGATTTAGAAaggtaaaaatcttt---------------------------------------------------------aaaagaattgaggcagggcatggtgctgcatgcctgtaa---tcccagcattcaaga---ggctaaggcaggtggatcactgtaagttcaaggccagcttaggctaaaaa--------------------gtgagctcaa-ggtca-gct-taAAATGCAT--------------------------AGTGTAATCCTCTCTCA-------------AAAGGACAAAGAACTGAAAGTGG-------------------------GAGGCTAGGT-------TTTCATAACAGATACATTTATCTCAGAACTTTTAAGAATTGCTAAAGCTATATAACTTTATGTTGAAAGAACTTTTAGGATAATCTGGTTCAGTAGTTtccaacatttt----ttctttcacattaaaT------GAAGATTTTCATTAGTAAAAAGTGCTTCCCATAACACTGATTTTTATAAGGGATTTATAACCCTATACTAGAACTCCAGGAATGTATAGTTCTAAGTCAGGTAATCAC-TGATACTagaatgttctttttattttccttttgctaaaAATCTATGTATTCATGAACGGCACATCACAgcctaaagtttta-----aaataatctttctgtcttaaaataaCTTTAGATTCACAGAAAAGGTCCAAATATAGAGAACTATATACTGTTTAATCATATAATCAAATTTTTGATTGGGTTTTGGTAGGAATAAGCAATTTTTgaaatactgattaaaaaaaattt---tttttggcctATACTTTCTAACTATGAGGCTAACATGGTTTcagaa-------------atatttactgttttaaaCACTGAA-------------------------------------------------------------------------------------------------------ATTACTAAACAAAATGTGTCATACA--------GGCTTACAA----------ATTAT------------------------------AATTTTAGCAAGTAGATGAATTCACAAAAATGGATCCTGCAAA--CTGAGACTTGACTTTTATTTACTGTACTTACCTTTGAAGAACCATTTGAATACATCTGTATCATGTTTTCTGCACCTTGTTTTACTTTAAGTTCTATATCTAATTGTTTTTGTAAGGCCATCAATCTATTATTGCTAGTAGAACAACGAGGGTCACTATTTGGAGTATCTGGAGTCCTTGGACAATCTGTGAATAAAATGTTAAA-GTTACTTATTAGGATCAACTGCAGCTTA------------------GAATGagactttaatatttt-------------------------taaagcc--------------------------------------------------taATGAG----------------------AAGGGTTTGAAATGAGCCTGAAGTCACCTAAATG-GATCTCCTTTTGCttacagataataaaaaaacTCAATGAATCCAAGCAAAGGCAATATCTGAGTTGTTGGACCACCTG--------------------------------------CTAGGATAATATCCAATTCTT--ATGGAAGAGTCTGAAATCGAATGA-------------------------GGTTATT-----------------GTCCGAGAT----------------------TCTCCTAACATTATGATttctaaattaattaaat---aaagcaaTTTGACTAGT-TATTCAGCAATTAAATTCCCTATTTATCACCTGATTGGCTAGGAAAGAATGT---------------------------------------------ATATTCAAACATTATACAAATTTCCATAAAGGTAATTTTTTGTAAACAGAA

a score=23003
s chr3           142851236 854 + 160039680 ATAAACATGGATGGAAATAG--------------------AACAATAAATGAACAAAGCAGCACAGAGAGGAAAA---GGACAGTCAGAGAAGCTTTCACAATGTTATCAACTTGGCTTCTTAGGGAGCCCATGAATTTGACAGTAGGGCTTAAAGAAGGTCTTTTTTT---------AAATAAATGTCTGAAGAAATAGTCAAT--ACCCTAAGAAAAGT-ATAATAGTGGCTTCTAGGGCTGAGGACTGAG----------------TGGGAACTGACTGGGACAGAAAGAAATGTAATCACTGAAGTAATGGAGCCTTCTGAGTAGACC-TAATGACATCTCTCTAGATACAT-TGTATACATTTGTTAAAAAATCATCAAATTGTATATTTCAACATATATGTAAATCACTCACACATTTATCATATGGGTTTTTTTATTCCACTAAAATTAAATTTTTAAAGGGGACTAACCGAATGGGCTACATTTTGTGTTACTAAAACA--TTCATATTTGAATGAATCACAAGACTGCTCTCAGCATTCTATGAAGAAAAAAATGCTTTCTCTAAATAAA--GTTTAAAGCTCTAG--CAGTTTCTTATTTTGGAATTCT---AAAGATGCAACAGGCAAGACATGTAAGACTTGGCAGAGATCCAAACACAACAGACTATCTT--AGTTTATAAAATAGTACTACTAAAAACGGAATTTTCATAATACACGTTTCCATTTATAATGTAATTACTAAATTTATGGGTAAGAGACTACCAGCTGAGGAGTAGAAATAGAAAGTGTTGTATAACTAGTTTGACTATTTTGAGCAAATTAATTCACACCTTTGGGACTGTTTCAGTTGTGAAACAAAGACTCGTTTCCTATTACTTATTTTATTTTAAAGATTAAGTTCTTG
s HiC_scaffold_1 128987727 843 + 233722169 ATAAACAGGTATAGAAATAAGCTGCAATGCAACATAACACAACAATGAATGCATAAAGTAGCACAGAGAAGACAATCCAGAATGTCAGA-AAGTTTT----ATGGTAACGGCCATTCTGGTTATAGAGACCAGGAATGTGAGGACAGAACTTT--TAAGgtctattttttatctatgaaACTACAAG---AAAGACAAACTTAATCTAAACTTAGAGAAGTCAGACTAGCAGTTTCCAAGGATGAGAGATAGGGTTTGATGACCAGGGATTGGGACTGACTGAGAAAGTACACAAAGAAACCACTGAATTGATGGTA---------TAGATTATAGTGA----TGGTTAgataaacatacatacatttgCTAAAA--TAATCAAACTGTATTCTT----ATATAT------------TACATGTATCATATATAATTCATACTTTCATTGAAA----------AAAAG--------CAAATGGGCTactttttatgtttctaaaactCTTTTATATCCCAATGAATCACAAGGTAGTTATCAGGATTCTGT-AAggcagaaatgttttctctaaataaacAGTTTAAAGCTCCAGTTCAATTTCTTATTTTAGAGTTCTCCTAAAGATGTAATGGGTGAAATATGTAGACCTTGGCAGAGTTCCAATCACAACAGgctatttttaagtttatataaTATTGCTACTAAAAACAGCATTTTCGTAATACACATTCTCCTTAATAATGTAATTACTGAATTTGTGAGTAACAGAATGT--------GAGAAGATTCATA----TTTCTTTAACTGGCTTGATGAGTCTGAGCAAATTAATTTGTATCTCTgagattatttcaatttaaataagaAAGTTGGTGGT---TTACTTTTCGTGttcctaagacaaaatacctg

a score=51139
s chr3           142853108 3211 + 160039680 ATCATCGGGTCCACTTTGCTAAGAGTATGTGGTTGACTCAGTACAAAAGA-----ATACTAGAAAATAACTCCCAAGTCCTGTCCTACTCACTAAAGATAA------ATACAACAGTTATTTATCTCTAAGTAAATGCTTCAGTTTTCACAGCCATAAACTCACTAA---CCTGAACAATACAGAAACAAGACCCTAACCACAACAGAAAACAGTCTCTAC--TTTTCCAACAGCTAAAAGCTACCAGCATAAAACAAA-ATTCTCTGGAAGGATATCTGTCCTGCTAATATATCACAGAAACAGCCAACAGAGCACAATACCTGTGGAGTCCTCTGGATCCGATACAACGATGTGTGCATTTAATTCTTGTAGCTTGTGATGTAATTCTTCTAATTTTTTATTTGATTTTTTCAAAATGTTGTCTACATAAGCCAAATTTTTCTTATCTGTTGTAACTTTCCTCAGGTTTTCAGCTCCTTCTTTGATTTTCAGTTCTTTCCTTATTTCTCTCTTTATTCGATCCTTGATGTCGTCCAATTTCTGTTGCACCATTGTATCTGAAAAGTCTAATTTCTGAACAGCACTCACATTCTCAGAAAATGGAAGAGTCCGGGAATCTCCCTATAATAGACAAGTAAATGAAAACTAAGTAAACAAGTATACAATAATGGAGTCTGGAAAAGCAAATGTGCAACATTAAGGATAA--GTGTTTGTATCTTGAAGAAACTATTTATTAACTGAGTTACATATAACTTTCTCCTTAATAGGAAACA--CTACTTATTTCCCTGTATTAAAACCATATGGAAGCATAAGTTCAAATATTCTATCCATTTACTAAGTAATATTATTTGACAAATACACTTAAAGTGagctaggcatgatgcctcgtatctttaattccaaagggaagccaaggcagaaggactgcaaggttcagggacagtttgggatatacagcaagactctatcttaaaaaaaaaaaaTCTAGCTACATACATAAATTACAATACATTTACATATAAAGGCATCACAGGGTTGTGTAAAGATGGTTAAATTGTCACTCACAAactctgggcaagttatgcaatcttttaaa-agtcaatttatttatcga---taaaaatcaaaataacactatcatggcctttcagaaatatttggaaattcaagacattctaagagaaatttcgagtacaatt-ttgactcac--taatcgcttaataaaAACATTACTAGATTCTAAAGGTGAATAATATTCTCCTCTATAAAAAATCACATGAAAATAAACTA----------------------------GCAAAATCTT---------------TCTGGCCACTTTTTATCGAATT-----------------ACCATATGTATTAGTCTTTTGAAGATGATAA------TCAGAATTC-----------------------------------------------------------------------------TATATATTTCATGG----CTAACTTATCAGATAAATTTACTTG-CCAATACAAAAACATTATTAGCAGAAAAAAATCTTTAAATTGTCT-----TAAAAGCTAAAATAGAACCCA-TACAATTATTCTTTGTAAAATGGAACATCAGTTAAGCAGACTCAAACTACATGTAGATAAGCCAAAGTTA--GTTTAGCTACT------TTTTATTCATCTAACTACACAAATGATAATGGATATTAGTTTAACAGCACTGCTTTGAATATTTTTAAAGTCTGAGGGCAATCAATATACTGGTTTCCTCTGAGAAGAGTTGGGTTGT----GGCTGAGATGGAAAAGAAG--TTATTTCACTGTGTAGCATGTTTACATACCTCTGAAAGTACATATTACACTTATAGATAAGTACATCCTACTTAAATTTTTGGCATATTATATTTTAC-------ATCCAATCTTTAACTTATAATAAAAATATGTAGCATCTAAAGTTGGGGGAAAGATGGGCTAA----------------------TGGT----------------------------AGCATCTTATATAAAAGATGAAGGAACTGACTTCTATTAATTTGTTTCT-AACATTCTTAAATAT----CTCCTTGACATTCTGACAGACAAAACATGCTA---TCAAAAACAAACAAAAAGCAAAACAGAAAACCTTAACACGCATGTCTATATAATATCTATTCTATACTCCATGCATCTCACCTAAGCTAATTC-CTGAAATATGCATATTGGCTTTAAGTTTCTTATTTTTATCTAAGTGTATTTAGGATGATCTTCGTCCCGGTCTAAAATACTGTTGAAGTTTTTCAGTattcattcattcactcatttgtctgttcactcattcaatcattaattcactcaCATAATGAgtgctggtaataaaactcaaggtgcttcacatgctagccaagctctctaccgcttccccacttctccagttccGTCAACAACTATCATCCAATGTGAGTCTCGTCATTTTATCTTTCAATTCACCTTAGGTTAGGTATTGAAATCACCAAAATATGACAACTGCCAACAAATAAGAAATTCC----TACTGTAGAGTCTTATGTAAAGTAGAATGAGGCAAAAAATACTTTAGACAAAAAAAGACTTGAATCCCACTCCATTAGGTATTTTTATTTCAGTTCTTTTAAGCTCACTAGATAATATCGCAGAAATTCCTTTTTAACTTTTTGTTCTTAAATTAACATTATGCAATAAGTcacaagtcccttaaaatttcttggttcgtggtatccttatcatttcagtaatgtttttttc----ctctttgcaggcaaaaaaaaaaacaaaaaacaaaaacaaaaacaaccacccaatagttctatttagtaaattctaaggcccaattatcctaatatttgtgttttaacaacttagtcatggtatacagtaacaatataaattgaaacaaaaatttaacatttatataacaattttaaaAGCTGTTAAAGATTAAAAACACCTCACATATTTGATTTTGATTCTTTGAAGACCCTTGCTTATTATTACACTTCAACTCTTATTTCTTTTCAAATTATTCTCCAAACTCCAACATTAACAAGCTATGGGAAATTCCTCTGAGAGACCATTTCTCTTGGCTCCATCACCACGCACGTTATACCTTTGGGATATACCACCTCTCTGCCTCCAACTATTTCTTCCAAGTTCCTTATTGGCCTGGGTAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTTTCAAAGTTCATGACAA--------AGAAAGAATTTCCTG-CCAATGTTCTCCCCTGGG----AGTTAAATGACTCTCCTATGTGTTG-TACTAGGGATCTTGTTTAAAT-AATTATCCCTTTTGTTATCTGATCACTCCAAAGACTAAGAGAGGTTTGAGGGCAGAGCTTTTTT--------------TTTTCCAGATAAAACTTTTTTTTTTTTAAAA
s HiC_scaffold_1 128996531 3169 + 233722169 ATCGTAAGAACGAATCAGGTAAACGCATGGAGCTGACTGAATACAAAAAACATTAATACCAGAAAATAACTCTCA-----TGTCTTACTGACAGAGGATAAGAATTTATGTATCAGTTACTCATTTCCAAGTAAACGTTT---TTTTCATAGCCATCAACTCACTCTACTTCTAAACAGAGTATAAATA-GACCTTTACTA-------AGGTAGTTTCTACACTTTTAGAAAAGCTACAAACTGT-GTCACAAAACTTATAGTTACTAAAATAATATACTTGTT-TTAGTATAT-----AAACATCAAGTAAAATACGGTACCTGTGACATCTTCTGGGTCTGATACAACAATATGGGCATTCAATTCCTGTAGCTTGTGATGTAGTTCTTCTAacttcttatttgattttttcaaaatgttatctACATAAGCCAAACTTTTTTTATCTGTTGTAACTTTCCTTAGATTTTCAGctccttctttgattttcagttctttccttatttctctcttgaTTCGATCTTTGATATCATCCAATTTCTGTTGCACCATTGTATCTGAAAAGTCTAACTTCTGAACAGCACTCACACTCTCAGAAAGTGGAAGAGTTCGGGAATCGccctatgaaaacaaaacaaa--------aaataaataggagTTCAGTGAAGTTAGCCACTTAGTAAAATATACAGCATTAAGGATAATTGTATTTTTAGCATAAAGAGAAgctttattaattatattaaat---------tcCTTAATAAGTAATggtttattaatttacttttgttAATACCACATAAAACTGTAAATTCAAAAA--CTGCTTATCCACTAAGTACCATTACTTGACAAATATGTT--AAGTGAACACAACATA-------------TTTATACAGAGCGGCATCTCAG--AGTTGGATTTT----------GACAGT---------------GGATTTGAT-----------------TATCTATAAACCCAAGTTAAATCCCA-------------GCCCCACA---TTGTG--------------------------AACCTTGGTAACGACACTTCACCTTTCAAATACTCAGTTTAACTGTGAAGTTTAAATATTAGACT-------------CCTTTCAGAGATA-gtggtaatttaaaattttaaaagagaaattacaaACATGATTCTTGGCCTGCTGTAGTCACTTCATGAAAACATTACTAAAGT----AGGTGAGTCATTTTATCCTCTATAAAAA--TGCTTAGAAACAAACTAAGCTGGTGCAGTGCCATGTGCCTGGAATGCCAATTCTTGGGAGGCCAAAAGTGGAGGGTCACTTCAGCTCAAGTTCAACCAACCTGGGTAACACAAGATGT-TTCCCctcttgaagaaaacaaaaggattcAAAATGCCAAAATAAAGTGATACTCACATGGTCAGTTTTTCATCAGCCCAATTTGGGTTTGAGAAGACCATTTAGATTGCTATGTGTATGTTTCACAGTCAACTATCTCAACTGATAATTTGATGGATTCACTATAAAAACAGTAGTAGCAG--AAAAATCTCTACATTATGCCCTAATAAAAGCCAAGAAAATACCCAGTATAGTTAACCT---TAAAATGAAAT-TCTATTAAGTAAGTTTAATCTATATTTAAAACATCCAAAGTTATCTTCTAGTTATctgtatattttactattttatccaCTGCTGTAATACTG----TTtttcaaatag----atttttaa---ttctaaaagatAAGG--AAGCAG-ATGATTGTTACCTCTAGGAAGAGCTAAATTTTTGAAGGCCGCGGAAAAGAGGAAGACATATTTCACTATTCAGC-TTTTTATGCACTTTTTGAAG-------------CAGAGTTAATTAAA----ATtgatattacaggcatgtgtcaccatgcctggctaatctAAATTTCGATCCCTA--AAAATTATGCTATGTGCAAAATAGTGGAAAAGGTAAGCTAAAGGAAAACATGAGTTTTACTATTGGTTTCCATATCAACTTACCCTGTACTCCAAAgcacattaaataaaa-atgaaattgttcaTTTCTACGAATCTGTTTCTAAACCATTTTAGAGGTAAGACCTCTTGAAATT----CAGACAAAAAGCAGtagagcaaaaaacaaacaaa----aaaacccaaaaccccaaaaca-------acaaaaca-----------------------caaaaaagccaaaacaccaaaaaaca---------------------------accCACACAGATATAGGATGAACTTTGACCTAAGTCAAAATGCTATTTAGGTTTTTC---------------------------------------------------------------------TGTAATGGAATTCAA--------------------------------CTTTCCTAGTATTTGGTTAGTTTTCAAAGCT---------TATGAGT------------------AATCCACCTTTTACTAGTTATCAAAAT-ACTAACAAAAGTTaactatcacaaaaaataaaactccaaATTTCTGTCTGGTTTTATGAAAAGCAAATGGAGGCAAATAATA--TTATATGAAAAAAG--TTTAATCACATTCTTCTAATTAGTTAAACTTCAATCTTTATAAATTTACCAGA-AACATTACACAAAGTAA----CAAATTCATGCCTTTGA------------TATCAAGTCACAGATTCC-CAAAATGTCTTGATTTATGGTATCCTTAGcatctcagtgaatttttttccttatttccttaTAGGCCAAAAGAAA-------------------------TATCTAACAGTTTGATATACTGAGTAGTAAGGGACAAATA-ATAAATACTTGTGTTTTAACAACTTAGtcactttataaaataata--ataaactaaaagaaaaa----------------------------------------------------------------tgtttcttt-------ctt------------------aCGCCCACTTCTATCC-ATTTGCTCCCTAAATTCCAACCATATTAAATTATGGACATTTACTAAAAGAGACCA-CTCTCTTGGCTCATTTATAATGCATGCTGTATCTTTGAGATGTATCACTTCTCTAACTTCAACTATCTCT---AAGTTCCTTCTTGGTCTAGTTATCTATCATTTTGTGCCTTTttgaactggggattgaattcatgacctcatgcttcccaggcaggcactcgtgctgttgagttaaatccccagtcttAAAGcagctcctttttctttctctttttttttttttgggtaccagggattaaacacacgacctcgtgcttgccaagcaggcacgtATGCCAATGATCCCTagcttttgtcattttgtttcaaaattcacCACAACTCTTTCTGGGAAAGATTTCCTGTCCAGTGACCTCCTGTAAGATTTAGCTAAATGATTCTCCTCTGTGCTGATTCTATCCATCTTACTGAAATCAACTATCTCTTTTATTATCTAACCATTCCACAGACTATGA-ACAATTGAAGGCAGGACTTGTTTGGCAGATTAATATGTTTTTCAAAAgtgatttgtctatttttaaaa

a score=18954
s chr3           142862074 1946 + 160039680 CAACAAAG--AGAAGAAAACATGAAGAGAGTTCCAGAAAAAACTTTCTTCTAACATTTTAGGATTGT---AAGAATTTTGAGAACTTAAATCTCAGGCCACTTCTAGGAAGCCTTCTTTCATTAGCT-CATCTTCAGGCAAAC-----------TGTTCCTAATTATTTGACATTTATACACTCTGGCTAACTTATC-AACAGCATGGTTCAA-TACTATCCAATGACTTCATAGAGTACATTACACCATCCTGATTCCTAGAAGCAGTTTTTCATTTCTAGCTGCCT-CCATACTCCTCACTATGTAAGCGTTTTATGGATTTTTTAACCCAGCACGCCTCAAA-CACCTCAACAGtctttccagatc---tccttatttctgttaatgaggacgaaatccttagttatccattgtcaatcctttagaattggcttttaatactttctttcctttctgcttcaatatccaatcaatagccagattctatATTATCCACTTTTCATTCCCTCTGCAAGAAACCTTTATACGTTCTTATAGCCAAAGGAGTAA---TGTACAAAGAAAATGTTT-TCTAAGATTTG-TCGTTGCTCAATTTAAGACCTTGGTTAATTTTTTTT------ACGTCCTCTTAAAGAAAAAACTACATAGTCTAATAAATCATAAATTTAAGTCTCAACATAATGTTTGTACTCAGTCAAATGTTTATATACTCCTATATAATCTTTCCTCT-------CAGTGGTATTT--AAAATAGTATGTATATTCCCAATATTAACTTTCATTTTGTTAAAA----AACTTACATTCTGGTGTTTTGAAACCAGAATCAATGGTTTTCTTCTTTAGTGGAAATTTGGTCTGCATGCTTACTTTTTTCCCCTTCACTATCTTACTTCAAGCAGCTCTTCAAAGTGTCATCCACGGTTGCCTTCAAGTCCCATT-------ATCCTAGTCT-------------AATTATTTAATTATTCAA-------------------------------------------------------------CAACTATCTGTCATAT------------------TTTAATCTTC---------------------------------------GCAAGAAAAGAAAATATACTCAAT--ACTATTA-GATATGTTGCTAA----------TTATTATATGATC------AAGACTCAGAACAATACTTTGAATA-------------CAGCAGATGTTTATAGGGATTGCTTAAATGAAT------AAAGAAATGGTCATA-------------------------CAAAATTAACATAC------------------------------AAGTAA-------CAATAAAGAAAAA---------------------------------------GAATCACACTAGCCTATCA-------------------------------------ACTTTTCTAT------AAGCAATACTCAAAAG----AAAA------GTCACACA------TGAGGTATAATATACTGTATCATTAAACAGAGTAAAGTTTCAAATGTGGCACATTCCATTGTAGGTGAAGCTGAACAAGAAAAACCTATAGAGAGCCTGCTAATACCCACAACTCATTTCCTTATTCTTA-------------TTCA----TATAATACAG----GAAGTACAGGTTTAACAGGTTCAACCACACACACCGA---ATTAGAGAATAACCGGTAGGCCACCACTGTGTATGTACAGAATATAAGTAGACCTTAAGT---------GTGGGGTGGGAAACAAAAACCA---gggctaatgtagctctgtggtagactgtttgcctagcatgaacacaatgtttgattcagtctccagcacacataagaaaaCATGCACACACAACATACTTGGGAAGAGGGCAGAATAATAAATATTGTATCCAATAAGCTACTGAACATTAGTAAGGTTTCTTTCAA--ACACAAAAGAGACGTGCAGCAGCAATGAGCAGCTCCCACCCCTGCAAT-------AACATTCACACTTTGAAT--------TACACAGGCTGCTTTTGTCATTATCT--ACTGTTCTGACATAATGTAAGACCAAAAAGTGTCTTCCCTTAATATTTTGGCTAGGAAAATATAATCATGTAACTCATACAAAATTAATTCAGAATAGGCAATAAGTGAATAAAAAACAAATC-----------------------TCTGTAGTAATCGAG---GAGATACAATTAATATTACATCCTTTCGTCCAAATAATTGGAAACTTTTAAAATATAATCTTATAAAAAAGAAACTATAGTATAGAGAACAGTTTGGCAGTAATTAT
s HiC_scaffold_1 129012910 2220 + 233722169 CAACATAGTAAGTATAAAGTAGGAAGA-AGGCctagaaaaaaattccttttaatattctatgaTTGTTAGAGGAGATTTTAATGTCTGAATCACAACTAACTTTCAGGAAACCTCCTTCAATAAATTTCATCATCAAACTAATCaaccctgtattttttttaacaacttgATACTTACACATT--GTCTAACTTGTCTAATAGCACCATTCAAATATTTCTCTGTGACTTTCCAGAGTGCAT--CTCTATACTAATTCCCAGAATCAGGTCCACATTTCTAATTATCTACTACATACTTCACCACTGAAGATGTTCACTTGATTTCAAACTCATTATGTCTTAAAACACCTCATCTGCTTTCCCAAACCATTTCTGGATTTCCACTCATGATGCCAAAATTCTTAGTCATTCAGTCTCAG-CCTGGAGAAT-AATTTTTTatgcttccttttttcttgttctccatATCCAGCTGTAAGCCAAGTACTACATTATCCACTTTCTAGTCTCTCTGCAAGAT-CTCAGATACAGTCTTAAAGTCAAAGCTGTCAGTGTGAAGAAGGCAAATATGTACCTGACACCTGGTTATTACTCTACTGGACACAGAgggtaatattttcttttaaaaagtccaagaaacaaagaaac-acata------TAAATCAAAACTTTGAGGCT------GTTTTATTGACTCAATAAAtgcttaatttaattttccttaatctttatcattttaacacagtaacattttaaaaatagtatatatatactC----CTAACTTTATTCTAATTTTAACTCAAAGTTACGTTATGGCTATTTTTAATC-----CTATAAACTTTTGCTTTAATGGTC-CTTGGACTGCatgcttccttttt--cccttcagtaTCCTAGTTTG-GCAGTTCT-CAAAGTATGAGTCACAGACCTTCTGAAATCTTcctctttcatatctttattttcacaagtgaagaaagtatttaaatatgaaatattttgctcATTATATGACTAAGCCCCAGAATAATACTTGGAATATAGCAGGTGCTTGGTCAATTATTTGttaaataagagagaaaatagCTGCTCAAAATTTCTATACTGCTGAAAAGTAAcaaccaaggggaaaaaaaaaaaaaagaaaagaaaa---actcaattaACCACTAAGATAACTTGTTAAAGGAATAGGAGTACtacatgcttttttaaaaaagttatat--atTCTGTGTATATCCTGTAATTCAACAGCAAAATTTGACAATCATTGTGTTTATGTATTTTCCAaaagcaatattaaaaataattgtttgttATGTTTAAGGGTTAAAACTAATTTATCTGGATAATACACTCCACTTACCATCAATGAAGTATTATGattcaatataaaaaaataaaactatatttaattACAATTTGGACTTGGTCATTGTGAAGTATAATATTATATCATAATACAACAACTCACATATTGTAAACTGAAAAGCTACCTTTTCTATTGGGATAAGAAGTACTCCAAAGGGGGAAAATAGCTCATCACATAAGATGATGAGCTATATCACACTTTACTACTAGGTGGaataaagtttataaaatgaCATATTCTATTACATGTATGGTTGGACAACAAAAACTAATAGAGAACCAGTTAATACCCATAACAAGTTTTCTTATTTCTAGTGAGTctagaatttcagttttctaGTCTAGTCTAGAATTACAGGTTTAACCAgttccacaataaaaaaaaaagtattagagGATAACAGGTAGGCCAC------ATTAAAACACAATAAggaataatttcaagtcttttccTCTTCAGTTGGCAGTCAGTAATGATGTTGGCCAAGGT---------GTGGGATGT---------AACCAAATAGCAATTACTTTGTTCTC-----------------------------ATATTTTTG----------------------ATACTATCTAATAAGCT--------------GGATTTCCTTCAAGTATACAATATTTAAATGCATCAAAAA------------ACCCCAACAATATAAAAGAACTCTAacaacttaaatatatattatacatgcgTTACTTTTGCCATTATCTAGAGTGTTTTGATGTAATTGGGGA---------------------------------GGAACTATGACCAGGTAACTCAATGAAA---AATCTAGAAtggacaatga--gaaaaaaaaacaagacaaaatgaaaaaaacccaCACTCTTTTGTTACAATCAGGgttgaaattaaaatga-attattttctcatattgaaatgattagaaaaatataaaatagaa-cttGTAAGAAAAAA----------TGAGAGTAACTTAGTAATACATAT

a score=10810
s chr3           142876767 648 + 160039680 ataataatatgaatacat-ttatctaatataggtggaaaCCCAAG-------ATTATATTCAACACAATTATATAAAAAC---TAAGGTAAAGGACACATCTTTTAGGATTATACAATCTATATATGCCCAAGTAAGAGACTAACCCACATTATTCTCAGTGATGACTATCTGGGTCTAATAGGAGGTGAAGTCGGGGATCATGGACAGGACAGAGGAAAAC------AATGCA--TAGAT------ATTGGAGGAGG-------------CAAA---------GTGGTGGT--------------ACTTAGTATGGC---------------------------------------------ACTTAGTGCTTC------------------------AGT--AGTGTGTAT------------GCCTGAGGTTTAAT------------AAAAGAAATGAATTACATGTA-----ATTTATTCAATGAAAACTCTGAAACAGCCAAAATAATCA-----------AACCTTT----TGTAACTAGAGGGCAGGAAAAAACAAAAAGGCTAATGTATAAAA-ATACATGCTACTTAGCACACATTAGCATGTAGGCGGCAAATCTTCTAGAACAAAAAGTAAATTCCAAAGTCTATCATAATTACTTTCCAATAAATTAAAATACCTATGTGCCCAGGCAGTAAACCTTTAACTAATTAGGCAAATAAAGTAGGTGTTGCAAATCTTTTAAATGGATATAGTTTACTATCAATTCTATATAATTCTTGTGTATCAGTTCATCTTTATAATGCAGTAGTTTAGCA
s HiC_scaffold_1 129027234 786 + 233722169 acAATAATATGGATAAATCTTAACAAAATTAGGtgaaaaatcaagttaaaaggTTATATTCAAgataattatataaaaacaactaaaataaaagatac-tttttAATAAGTATACATTC----------------AGAGAT--AACCACAGGATTCAAGATGACAATTATCTGGTGACATTAGAAGGTGgaaataagta-catgaaatggaaaggaaaaaacccCTACAATGTAGTTAAATCCCTTGAGTAGAGGGGGACGGAACAGTCCACAAATACTTTATTGTGACAGTCAGATAATGATTTAACGCAGTGTGCCTGAGGGTGAACCACACTAGGCAACCTCATAACTTGCAACCTCATAACTTAGTGAGTCCCTGTCCCAAACTACAAAGGAAAGAGTCGAGCATGTATCTCACTGCGAAGATCCTAGGTTCAATgcccaatgcaaaaaaaaaaaaaatttacatgtacAGTAATTCGTCCAATGAACATTGTCATATAGGCAGAATAATCACCCACTCAGAAAACCCCTACAGTGCCAGTTACAGGAAAGGGAACATGGTAAGGTTAAGGTATAAAATATGATAGCTATTCAGCATATATTAAAGT-----------ATCATTTATAACCAAAAGT----TTCAAATTCTGTCATGGCTTCTTTCCAATAAATAAATGTACCCATATACCAGGTAAATGAAGCTTTAACTAATTAGACAAA-ATAATCAACGT--CAAATTTCCAAAATGGATGTAGTTAATAATACTTATTACATAATTATTGTGTAT-AGCTGATTTGCATAATTTAGCACTTCAACA

a score=105671
s chr3           142878474 4758 + 160039680 [encoded data, 5257 characters]
s HiC_scaffold_1 129031133 4798 + 233722169 [encoded data, 5257 characters]

a score=9207
s chr3           142883585 818 + 160039680 AACATTGGGAGAAGCCAAGTTATATGATTACCTTCCC---TAGTAACT----AACAGAG-AGAGTTAGGCCCTGGAGTTATGAGTAGTCTTAAGAAAGAGTCTATAACAAGTAAGTGGGGAGTCCTCTTGAGGAAGCAGTGTTGTGTCCAAAAACACTAT--TACAATTTTAAATGGTAGGTACAAAGTGGTAGTATGATTTTTACTGTAAAGTATACACAACAAAACTTACCATTTAAAGTGGGTCACTAGATTCCTATTGATATGTTTTTCTTTTTCTTTT----TTTATAATTTACTTTTCT-------CCAGGAAAGAGATGAGAAACTTCATATATACATAACAAGTGGCTAACTATTAAGAAGTATTTGTGCAATgcc------------aggtgtgatggtacactccttgaatcccagcaattgggaggcagca-------gctggcagaagtctgtgagcttgtggccagcctgctctacataatgagttccagaccagcaagggttacatagATGCTAGACAAATAGAAACACAA-TAAGATTTCT--------TTAGAAAAACAAATTTAGATATAAAGAGAAAAACGAGTGTTCTTTAGAAAAACAAATTAAGGTCTAAAGAGAAAATGTTCACATTTCAGCAGCATGGAATTT-TGAACCTAGGAGACA-----AACATGTAGCCTAGCTCTCACAGTAAGTACAAAATAATAAACCCCAGTTTAGCTAATTGGGAAGGAAATAGTACTTGTACTAAGTGATGTAGGAAAAGAACTAAGTCTTAGAACTGG--CATTCCATTTGCCGCCTGGGCTGGTTTTAATCTGCACTGTGCTTTAAAATAGAATCTTCATAAACTGAA
s HiC_scaffold_1 129035947 771 + 233722169 AACATTTGGAAAAGCTAGTGTATGTAATTATCTTCCTGGATGATAACTTAAGAACCTAGCAGAAATAGGCCCTGGAGTTGTAACTAGGATTAAAAAGTAGTCTACCGCAAGTGACTGGGGAGAC--CTGGAGGAAATAAACTTTTGCCCCAGAcaactattatacatttttaaatagttgaTGCAAAGTA-----------TCCACTGCA---------------------------------------TATATGCttctgtatgtgtattttttattgtggtgaaatgtaaaatgtaccctttttttggtgccggggatcaaactcatgaccttgtgtttgc----caagcaggcacttat------gcagctgagctaaacccccggccccaaAATATGCTATTGTAAGCATTTTGAGTGT-----ATTCTAGGGTATTAAATCcatgctga-atatttttattatcttt------gtcTTGCCTTCAGAATGGATTTGAGTTTGTTGATGTGCGCATAA----TAGGTGATCAGTAATGGAATTAAAAATTATGTAGTGACTtagaaatacaag---aaatataGCCAG-----TGAGccttctttaaacaaa-aaatttaggtat-ttgaGGAAATGTTCACATTTTAGCACTATAGAATTTCTAAGTGCAGAAGAGAATTATAATATCTAACCTAACTCTtactacagattaaaaaaaataagccacCACTTAGTTAATTAGGAGCAAGACAACATTATTACTTAGTGGCAGACATGGAGA--------TTAGAATTTGATTCTCCTGCTTGCCATCTGTGCTTGTT------TACATCATCCTTTAAAACAGAG--TTCTTGGGCTGAA

a score=16426
s chr3           142887543 782 + 160039680 CAGTACTTTGTTTTCACA-CTTTATAGGCACTTA----------------CAGTGCATATAATATAGCTCTTCTCTTAGGCTTTAATCACTAGAAAGGCATGCATGT--TTTATATAGCCCAATATAGTCTTTTACAACTAGTAAATAACTGT--TTTTCTCTATATTTCTGAATGTATAACAG----------TGTTAGCCAGGAACTCACTAGCCAGAGAACGAAATATCCTTGCCTTGGGTGTTCAGTGTCAGAGCTTCTAAAGTTTGGAGCCTC--TTTCTTCCACTCTAGTCTTCATCGGTCTCTGGCAGGCTCTCTTCACATGCTTGCTAC-TCTTCTTTGCCACATACATTTCCACAGCTTCCACATTGCCTGTATTTCTTGATAGTGCCGACATTGTTGTGGACCAGGAACTCAATCCGTGGCCAGTCATCAACCC------GCTTCTCC---AGCATCTCCAGAGCTCACTGACTTTGTAC--AAATGTCACGCTGTACTCTCTGATGCCTTTCACTTCCACGCTGAGTCCACCTCTCTGTTCCTACCCT--GCAGA--AACAAGTGAATCTCTTTCCTTTTCCTGTTGGACTTTGATCGTTCTCAGATCCTGATG--CCTCGGTGGTTATCCCAAATAAAATTACTGGGAAATTGCTTCCAAGTATATAAAAAGTTCTC----------CATCAGAAAATTCC-ACA-TCCTTCTTTGATACATGCTCACTGAAGTCTAAAGT-------------------------AGTGAAAAAGCATTTAAACCACAATTGGGAAATTAAAGTTTG-GTTTTTACAGtttattttttcttttattgaaaa-----tcttatttaattttttt
s HiC_scaffold_1 129046299 848 + 233722169 cagcaTTTGGTTTTCAAATCTATTTAGGCACTTCAGTCTCTTGGTGGAGTCATTGTATATAAT-TCATTCACATATTAAGCTTTAAGCTATTGGAAAACACCCATGTATCTTGTGTAACCTGGTATATTGTCTCTTATGCAGTAGATAATTGTATGTGTTTCTGTATTTCTGAATCTATTAAAGAAATTTAGACTGTCAGCTATAGACTTTCTGACTAGAAAATTAGGTAAACTTGCCTTGAGTGTCCAGTTTTATGGTCTCTAAAATCAAGAGCCTCTATTTCCCCCAAGTCTGTTTTTGGAACTCTCTGATAAGTTATATACAAAGGCTTAGTACATCTCTGCCTCCACATACATTCCCTAAACAC--------------TTTCTTAATTATGCCTATGTTGATAGGGACCAAAGACTCAATGCATAACCAGTGACTTTCCCCTTAGAGCCTATCCTTAAGCATTTCATGATTTCATTAACTTTATACTAAAAGAACCTATCATAGGATGTGATGCCTTTCACTCTAATGCTGAGCCCACCTCTATCTTTCCATCCTTAGTAGATTCACAAGCAAATTCTGCTACTTCTC-------AGTTTAATTATATTcaactgcttttaatttttaactgctatctttaatgaaattatttggaaatttcttacaaatatataaaaagttcTCCTGAAAGGCACACTAGAAAAATATGATATTCCTAGTGTGCTGCATACTCACTTAAGTGAATAGTGACTTTTTGAATTGTAGATATTTGAAGTAAGAAAGT------ACCATGGTTGAAAACTTAATCTTTGTATTCTAACCCTttaaactttctgtttttctaaatagctttttatttactgtattt

a score=76729
s chr3           142893144 2797 + 160039680 TTTTGGTATCAGCAAAGCGTTCAACTTTTCAAGCTTTGTAAGTCCAAATCA------ATAGCTACAGGATCCGCTAGGACCTAGAATAA----ACTGAGTGTGGCAGTTCAAA---AGTGTTCTAAGTACTTGGAACAtgttctcttagctggcaccatcttagaacccagagaccattctgtaagaacacgaagccccaaggtgggaccatgtactgatgctgtggtcagtcgtgatagctgagccaagctgttaa----------ccctgtcatta---------------atatatctcggttctcatc-------------gtctctggct--------------ctgggttgttta--aatcctccag-------------------cttgaggctatagacatcaaggaaagagacaatccttcctc---taccctgaccaagtccccaaaccacatcaggtttcagcgtaatacaaaggttttcttatTTGATTTTTAAAGGGAGTGAAGGACATCGGGTGCA-------ATTAATCTTTAGGGAGTACAGCCTTAGTTGTATATTTAAATACTCCCACTTCTCAAACGTGCCCTGGATAGAA-TTTTCTAAAATATTTAAATTATCTACCCAATT------AAGAATGAACGTTTATAGTTTAATCACTCGTTTTATGATATTTGCTGAATAC-TATATTTTAGTGCAGGTGCTTTAAGTTAT----------AGAAGCCAATTGTATTGAGTGTTGAGTTTCT-GTATAGACTTACAGCTTTTTGTGTGAAAAAAATAAATACCATCATATTGTATCCCAGAGCATTCAATATCAGAGACTGCTGATAAGTATCACATGCTTA--CAAAAACTTGTTTAATTGATATTTTT---AATTTACAGTAAGCGGGGTTATAAGTACCCATTATTTGTGTGCACATATATCATGAATTCAGGTGTGGCTAGAAAGACAT---TTTTCTATTTAAAAATAAGAACCACTAGTTATAAGCACTTCTAAAATATAAAACAAGCTAAAGTACATTGCTTTATAAAGATTTTTATGAAAGGTGCCCCATTAAAGATGCTATTTTGGAAAAGTGTATTATAGTCATTTGCATATTTATTTTTATATACTGATAATTCACATGATCTGTGTATTGCTTTAACAGTTTAACTATAAGCTGCT---------------TATTTTTAAGGTATCTAACTAC-----ACACATATGCAAGCAGTTTTAA----------------ATCCAGACT-CAGCTGTGTGGCTGTGCTACCCCTCATAG-GAAATCCTCCCCAAGT----CTTCTTCAGAGACCGATGCAGAGGGTTCAAGCACTGT----------CCTTCTTCACTAGAAGGAGGCTTATGAGATCCCAGCAAGATGGATCTCGGG--CCGTGTTTTAGACTGTGCTG---------AAAACAATCTGCTAAAGACCTCCAAAGCAGTTTAGACAACTTTGACTTAGCTGCAAGCCATGTGAACACCTAGTCGCTTGACTTGAAATTGGAGCTGTAGAGAAGAGATTCAAGATTTTCCTTCTGAGTTCACTTGCT------AAAGACACTTCCTATTTTTTATGTGCTAAGAATGGAAAACTAAGAG----CTATTTTTAAACAAAGAATAAAAATGATCAATCTGACAAATTGAGTTTTTACTAAATCTGTAGTATTGTAGACACTATTCCATTGGCAGTAGGGATATTTTAAAGGATTTCACACAG---AATTTGACATGCTCTTGGTTTTGTTCTGTGTTATATTGGTCTTACTATAAATTCTTCAGAAATATAGCTTACTTTCTTACCTTTCATCATTTCCCCATGCTAACA---AAAAGTCTGTATTTGAAGTGACTATTTACTT---AAACATTCATGTCATCTTGACTTGATCTACAAA--AAACACGGTATCTAATACTGAAG-AGTTAATAAAATCATTATGGTAATAAACTATCTTATGATCTCTGAT----ATCAAATCATGC----------------TCAACTTTAAATTTCA---CTATATTTAATAATAAAAGGGGACAGA---------TGTTAAA------------AACGTCTATCATGATGATAAAAAT-------ATG------------------------------------------------------------------CATTTTA-----------------------AGAC--GGTT---------------GTTGGTAAAGATG---------------------TTATTTACATTTACATAGT-------------------------------------------------------------------CTGTAATATGTTAAAACG--CCGTAGA--TGCCATTTACATACAATTACAAAATGTTAAAATGCAGTTATATTTGCTTAAACAGCACCAATTAGTTAAA---TTCTCAATTTTAACTCCTGGGTTGGATATGATGTGACCATAGTAATAGAATAATAAATTGAATGATTTCTTATAGCCTATTAAGGTTTTTACATAACTTCTATTTTTCACTTTTGAATCATATTTCTAAACCCATTAACCTCCCACTGT-TTTTCTTTCTCCTACTGATTCATGGTGTAGTCTA---------------ACGTCTCGGAATGAATCGTTTTTCATTAGGACATGTTTCACTTGCCCTAGGTACCTTGCCAAAAGTTGATCTCAATTTTTGCCTTCCCG------------ATCACTTTAGTGCCAAAAGAATTTAAATTCCCTGACTATCATGATGCATGCAGTCAGCTTGTTTTTCTTTGAAAGGTAAATGAATCCAGTAGCTATAAAGA-CCTATGAAAACCAAAGCTCATTCAAAGTGTTAAAGACTTGATATCGTATCCACACGCAGTTCATAAAGAACATCCTTGGCCTAAGGCTGTGTTAATAGATGAAAGATAAGACATTCCTGGGAGAGATTTGAAGTGTGCTAGACAGGGCTTTCTCAATATTTTTTTTCCTGCTGCATTTGCTGTGAAACTGATGTGGTC---TCTGGTGGCGACGGGTTGTGGACAAACTAGCAGTTTCTAATGTAAGTGGCAAGATGTATTCCTCAGTATACGGTTGTGTCTTCCTTCTGCCCTTACCTCTTCTCCATGTTCTCTATTCAGCATCATTAGAGATTACCTGAAATTCATTGAAGACATGCAGGGTAAAGGCAGCATT
s HiC_scaffold_1 129069897 3171 + 233722169 TTTTGGGATTAGTAAAATATCCTA---TTCaggctttaaaatgaaaactcaCTCTGTATAGTTTTCAGGTTCTCTAGGACATAGAGCAGGTGTATTCATTGTGGCAGttaaaacaaaatcaaccaaATTCTAAAACC----CCTATTGGCTTGAAGCTTCTTAGAAGCCAGTCACTATTCTG--AGAAATTGTATCCTTATGGAGACTCTACAT----------------GTAGTACTAGCTGAGCCAAGCTTTCAAATCATGCCAGTCCTGTCACTAGTTAGGACAGTAAAGATACAT-TCTATTCTTAGCTATGTTTGTTTAGGTCTCCTCCTAAACGAACAATCCTCAGATCTGTTTAGGAATCATCCAGACCGTTATTGGGAATCATCCTTGGATCCTCAGACatcaaagaaagagacaccacgtcccaccatgcctggtccAAGTTCCTACACCATAAGAATTGTAAGCATAATAGAA---TTTTTTTA--------------GGGGCAAA---CATTAGATACACAGGTAAATTAATACCTAGAACATACATTCTGAGTTGGATATTTAAATAGGCCCTGTTTTCAAATCTGCCATTCAtagaaattttatgaaatgttgAAATTCTCCAACCAACTTCaaacaaaatttaacttttata---caTTTGCACATTTGACAATATTTATAGGACACCTACAATTTACTGGGTTTGTATCAGCCCACTACACATGTCAGAATCCAATTATCTTCACTCATTAGTTTCCCACATAGATTTTAAGCTTcttgagtgaaaaaaaatcagacttctatAATCTCTATAACACCCTGTAATATAAAAAACCTATTATAAGTATAAAGTGCTTGATTAAAAACTTGTTTGgttaataattttttaagtttataataGAAGCGTCTCT--GTGCCCAGTCCTTGTGTTTATGTGTGCCATCTATTCAGGTGTGACTGAAAAGATGTGCATCTTCTAATTAAGAATAAGAACTGCTAGTTATAAGtacttataaaattttttaaaggtttaaaaatgTCACTTTATA----TTCTTGTGAAGGGTTTCCTATTAAGGACGCTATTTTGGGAAAGAGTATTATGgtaatttgcatatttatttttaaatgatggcaATTCACATGATCTGTGTATTGCTTTCACAATTTAACTGTAAGCCTCTCGTcaaatgaaatgttatttttaaagtagcttATCACCACACACACATAGGCAAGGTGTTTGAATGGTATAAAATATAAGATCCAcatttcaattgctttgttgtattGCCCATCACAACTAGAGCTTCCTAAAGTTCTCCTTTATTAGAGCAAAATATGGGTGATTGAAATACCACGCTTCAGCTGACTTCATCATTTGAATGAG----ATAAGCTCTCAGCAAGATGTATTCAAGAAACTATGATTCAAACTGTGTTATCCTGCTATAAAGCAATCTGCTAAACATTTCTGAAGCAATTTAGACAGCTGTGACTTAGTTGCAAACAATGTGGACACTTAATCTATTGACTTGAAATTGGGACTAAAGAGAAGACATTCAAGAGTTTTCTCATGAGTTCATTCACTACAGAGAAAGATGCTTACTATTTTTTACGTGGTAAGAATGGAAAGCTAAGAACTGTCTactttaaaacaaagaataaaaatgatagttcttataatttgaatttttactgAACTCATAATATT----ATTCTA-TCTGTTGCAGATATAAATGTCTTAAGGTCCTTTATCCAAAATAATTTGATATGCTTTTAGTTTTACTCAG-ATTATGTCTGTTTTCATATAAATTCTTAAGGAATATAGCTTATCTATATTATCAACATTCTTTTCTCATGTGGATAGATAAAAATCTGTATTTGGAGCGACTATTCATGTAAAAAAAATGCATGCC-TTTTGACTAG-TCTACATACCAAAAATAATTCTTTGTACTGAATCAGTTAATAAA------ATGTTAATCAATTAGAGTAAAATTTTTGATATTGATCAAACTATGTTTGAAATTGAAACTTGTTAGCCTTGTATTCCAGATCTGTGAataagaataaaggaaaacagaccaaatttttattaaaataagggAAAATAACATTCActcttattataaatattttgtgcATGTGgtgatactgggaattaaacctagGGCTTTCTCACTAaatgagctatattcccagccctctttttcattttattttattttattttttaatttggagactgggttttgctaaatcactaagttgacAAGGCTGGACTCAAGCTTGCAGTCCTCttgactcagcttcccagagtgctgagattacacgtgTGCATCACCCGTGCCTGGctagttaatttttaaagatcttttatgGTGTGACTATTCTATGTCTAAACATTTCATAGGTTTATCATTTAGATAGAAATGTACAGTGTTAAA---------------CTTTAACCG-GTTTATTAGCtagacttttttcatttttgacctCTTGATTTGACATTATATGACTctaataatagaataaaaaagcaaataa------------catAACAAACTTTATATtacttctatttttcatttttgaactatcTTTCTAAAGCCATTAACCTTCTAATGCATTTTTCTTCTCCCACTGATTCATGATGCAGGCTAACAATTTTAGTTATGACAGCTCTGAGTGAACCATTTCTCATTAGCACCTGTTTTACTTGTCTTAGATACCTTGCCAAAAGTTGATCTCAAGTTGGGCCTTGACAGGACAGAAGACTGTCATTTAAATGCTGAAAGAATTTGAATTCCTTAGCAGTAACTGTATAGtcaactcatttatttttctttgaaaggtaAATGAAGCCAGGAGCTATAAAGATTTTGTGAAAGACAAAGTTTACTCAGAGTGTTAAAGATTGAATTTATGATCTGTATTCAGTGCATACAGGACATCCTCTGCCTAAGGTATTGTTAATGGATGAAAGGT-AGACATTCTTGGGAAAGATGTGAAGTGTGATAGTCAGGGTTTCCTACATATTCATTCTCT--CTGTACTTGCTGTGATATTGATGTGGTCTGTTTTGATGGAGATAGCTTGTAGACAAA-TGGTAGTTAAATCTGTAAGTGGCAAAATATGTTTTTCAGTATAACATCAT-TTTTCCTCCTGCCATC------------TGTGCTCTATCCCACATGGTTAGAAATTACTTGAAATGGATTGAAGGCATGTAGAATAAGGACAACATT

a score=16371
s chr3           142898072 576 + 160039680 TACTCCATTGACCCAGAAACCCCTTTCAAA-TCATGTAAATCAAGAGGTTCAAATCTTTGTGTTAATTTTAAGAA--------AAA-----------AAAAAAAAAAGGCTTTCCAGAAAGCCTTCTAAGTGTCTGAAGGATGTGACTTTAAAGAAGCCACGTGTGCCTTTCTGGCAGTGGAGTCGAGAAGTCTGTAGGTGCACCCAGGCCAAATGGTGGGGCTGGAC-------------CCAAAAAGAATGCTGCATGTTTGCTACACATGCTTAAAAATGCAGAGAGTAATCCTGAAGTTAAGGGTTTAAATGTAGATTCTCTGCCATTAACCATAGCCA-GTGAACAAAGTCACTACGATGCACCCATGAACTTAAAACAAAGCTCATGGCTAGATTAGTCCATACATGAAGTCCCCTGTCACACTGAGGTGATCTTCACTGAAAAA-GAACAAATTGACCCGAAGCCAGAAGAGGAGGTTGCAGAGaa-------------aaggaaaagaaaaa--------------------------------------------------------------aaaaaaaaaaaaaCCAGTATCCCAGAAGAAACTGAAGAAACTAAACATTTTGCACAGGGATAAATTCTGTGTAGTGTAGAATAGATGCAGataaaatttaaaat
s HiC_scaffold_1 176819719 660 + 233722169 TACTCTCTTGACCCATAAAACCTTACAAAAACCATGCAAATCAAGAGACTCAAATCTGTGTGTTCACTTTAAGAATCTCTGTGAAACTGCCCAGGCCATCAAGGGTATGCATATCCAAAAGGCCACCAAGTATCTGAAGGGTGACTCTTGAAAGAAGCAGTGTGTGTCATTCCACCATTTTAGTGGTGGACTTGGTAGGTGTGCTTAAGCCAAATGA--GGGCTAGACACAGGATTGAGACCCCAAAAGAGTGCTGAATTTTTGCTGCATGAGCTTAGAAATGCAAAGACTAATGATGAACTTAAGAGTTTAGAAGTAGACTCTA-GTCATTGAACGAATCCAGGTAAACAAAGCACCCAAGATGCGCT---------------GAGCTCGTGATCTAACTAATGAATACCTGAGTTCCCCTGCCACATGGAGATAATCCTTATTGAAAAAGGAACAAATAGTTCCTAGGTCATAGGAGGAGGTTGCATCAAACACAAGAGTATCCCAGGGCAGGAGATAGTGCTCAGAgccataagtacctgcttggtaagcacaaggtcctgagtttgattcctggtaccaaaaagaaaaaga----tatcccagaaaaaactgaagaaacaaaaacttacGATCTGAgagtaa----atgaaatataaaataaatgcaaataaagtaaaaagt

a score=14310
s chr3           142930397 730 + 160039680 gggagc-caggcatctcttt-gatactctgatttcatttcctttgattatatccagtagtggggttgctggCTGCCTAGTCATTTCAATTTACAACTTAGGAAGTCAAATTTCAGAAAAATCTGAATTCCTTGCCTGAAGTGTTAGTTCTAATG-----------TGTCTTGCCAGAGCCTCCCTA-------CTGGATAGCTCCTTCACAGCT------------------------------AGTGTA---GCCATGGCTCTTTGGTCTGTTGCTTGCTGTCCATAGGCCCCTTTGCTGAACTTCCCCAGGGAAATAC-------AGGGGCC----------CCACAGAAATGATTACAGAGTAAATTATGCCATGTCCTTGTGAGACTTGTCTGAACTGTATCTGAAGGAGTTACCTTGAACTCAGACGTGTAGGCTCCGATTTTTCTACAGGCTGCTGAAATGTTAGATTGTTCACTGTGGCCCAGTAAAGAAATCCAAGAACTGTCACCCG----AAGTATGG-CAGGACACCAAGCATACCCAAAC-------------TGGTATTTCAAGAGCAGTGGGAAAACTCTA---GTAGCCTCTGAATTCCAAACCTGAACATTAATTGTTGTCTCAAGACTTTAAAAGCC--TCCTGCACAGGTTACACAAA-TAGGTC-ATGGACT-----TCAAACAGCC-GTGGGC-----------ACCTCTTACCTATATAATAAAAGCAGCCCAC--ACTGGTTTCTACGCTCTGGAGGTATCAGCCTGAGGCTCAGTGACATGCACACATATGAACTGCAAAGAGTTGTCACTAGCCCAGGGG
s HiC_scaffold_1 129093158 774 + 233722169 GGGAGTGCAGATATTTTTTTAGAggcactgatttcatttcctttggatatatccAGTAG--GGATTGCTTGAC-CCTAATAGTCTGAATTTACAGATTAGGAAGTTGAGtttcagaaaa-tgtaaattagTTGGCCAAGGTATCACTTCTAATGCCAAAGTATCTTCTCTTGGAAGAA--TCCCTAATGGTTTCTGGACAACAACttcatctctctctcttattttttgcCTCTTAATATTTTGAGTATGTAGGCTATATATCTTTGGCCTTTTGTTTCCTGCAGGCAAGCACCTTTCCTGAACTTCCCTAGAGAACAACTTATTTGAGAGGCTGCAAGTTCAACTATAAGAACCAC-ACAGAGAAAG------CAT-------CAAAATGATTATGAACTGCATCTACAAGGGAGACCTC----------------------ACTTAACCGCAGGCC-----------AGTTTG-----------CCAGTGAAAAAGCCCAGAAGCTGTCACTCAGTTTATGTATGGTCAGGCAGTAAAGCAGACCCCAACACTGAATGTATTCTGAGTTTTAAAGAGTAGCTGAAAATCTTTATATGTAACTTCTGAATTCCAAACACAAATTTCAAATGTcccc----gatttaaaaaaaaaatcctgtatagGATGCACAAAACAGGCCCATGGGCTGCGTCCCATATAGCCCTTGGGCTCCAGTGTGAGACCTCTTACCTGTATGCTGAATGCACCTAACTTGCTGGTTTTTCTGCTTTAAACCTA--AGCCCCAGGCCCAATGACATGCGTAGGTATGAGCTGCAAATAGTTAACATTGGCCTAGGGG

a score=68229
s chr3           142931527 2876 + 160039680 ATCTCTTTTCAACTGACTTTCTTCGCATATGCATAATGTGAGACCCCAGGCTCTGTGAG-----AGACA--gtctgccctgtgtcactgtcccctcctgg-----agacattgccttaacacaagatagggattcaacaaatacttgttgaTCAACTCATGATGTTTCAACCTGT--GCCACCCAGTTGTTCTAT--CCAGTGCCT----CAGACTTGAGGCTGTCTCCTGTTTAGCTGTCCT---GACTCTCTCTGTAAATTCTAT-CATATTTTTTTTGTTTG---ATTTTCATAAACTTGGAGGCTTTGCATCATCTCTGAACTCTTTCATTTTCCCAGTTTTGAGAGTTACTGAGGCCCCTGACGTGCCCCCACCTGA-TCCTGCT---------CCCCCCAGCCCTTGAATCCCGCTCCCAGCGAATACTGCTTACAGCCTTTGTGTCCCCATGGGACCTCAGACTCCTCGTTTAATTGTAATCATTGCT-AACTGCTTTTAAGTC--TGACATTGCCCCTCCCCAAA----CTGTTCTGTTCATAACAG-AAACATTTTTGAAAATTTCAGCCCCTTATTAAAAAAAAAAGTCGTTGGGGTTTTTCCTTGTCCCCTTCTGGGTGCAGACTTTGATTTTGTTGTAGATGAACCGTACTTTAATTTGCATCTAATACATCCGACTTGAT-CCCACAATGCACTATAGGACATCCTTTGTCACACTTAACCTGGTT-CATTGGCAGGTCCTGAGGACACCATGAAGA------------------------------------------CTCCTTTCCCCCTCATTTTATCGTT-------------------------------------------CCTGT------------------------------TGTCTTAGCACCTTCCAGATGGATA-----GGTCTTACCCTCATATTTCTGTTCTACATGATTTTTTTTCTACATTATTTTTGTATGTGAGAGACAAATGCTTCTCCCTCCCACTCTGACCCTCACACAAATTTTCCGGACACTCCGACTAACATACTCTTTAGGCCGTGAACACGGGCTGTCTTCCACGTACTGTTTTCCAGAGAA-GTAGGAGGATAC--AGGCAGAGGGG-------CCGGCAGCTGACTTcaaa-cttgaattcagatgatttgaagttc-accactccctagctcggtgactgtagccaagtagctaaatctctctgtgcctgcatggcctcatctctgcatcaaggctaagaataatgcccatcttagaagacagctgagagggctgaataagtcactgtgtgggaagcaatgcctggcacagggcagcactctgaatgtAACCAACtgccattatcatcttcttgtttgcttttatgtgccatgcttgtctccataactttttttttttttttttttggagctggagatagaacccagttccctggcccataccaggcaaggactctaccaactgagctatgtcaccaacccTTCATCACTGACTTGTAAATCCTTCGAAGTCAGGGATTTTCATTATATGTATCTCTTGGCCTTGAAAAGGAACTCCAGAGGCAGCAAGTTGATGTAGAGGAAT---ATGGGTTCCAGAAACCAGGCTTGTCAGATTGGGCAGGCCTTTTGACTTCTTTGAGACACCATTTGCTTACAGGCAATATACAATACCATTTTTACCTATAATCCCTCCCATCAATTACTTGTTTATTATCTGACTTATTGCTTCCATATGGTTGATGTAAACACAACGAAAGTTAAAGCATGCAGATGTCAAAGCCATTACCAAGGTGCTCAGCTAAATGCTTTTCGATGAATGAAATCAAGTGTGTGGCTTCATCCCCTCCCCACCCCCTCGATGTAAACTTCATATAACAAG-AATGGGAAGCATTTTCTTTTGAAATGTTTACTTAGTAGTGGCCCACTTTCCCCATGAAGCCCGCCTCCCACTCCCTTCATCTTAGGGCATCATTACTTGCTTTTGGATGGCAGGTGCGGAATGTGAATAGAGGCAGCTGGATCAG-GGTATGCTGGTTGGTAGAGAAATACTAAGGATCGAAGAAAATTTT---AATG-TGTTTTAGCTTGTGCTCCAAAAAAATTT-AGTTTTAGGTCCCCCTCCCCCCGCCTCTGTGTTTATCAGGGTGCTTACAATCTCCTTTCAGAGGTAAGAAGATAGGCTAGACTATGAGGAGAGAGAGCAGAGTAAACAGCATATAGAAAACTGAACAATTATCATGGGAGAAACAAAAATCAGAAACCAGAACCTGACAAAGGAACAATAAAGGTATTAGATTAAAAATAAATAAGCAATAGAGCTATACAAAATGAATATGATTTTTCAAGGGAAGAGACTGTGACTCATTTAGTCTTTGAGAAACAGAACATTACCAAAAACAGTAAAAATAATGAGTACAGAAGGGCATATGATATGGGGTGCAGTGGGAATTTGCAGGCCGACTTCTGCGCTAATTATTAAGCATCCCAGTTCTCATTCTATATGCAAACTAAGCATCCATAAACTCCTCAGTAGCAGGAGGAGACATAGGAAAATATTCAAATACCAAAGTAACTATGGAGATGGAAGGAACAAAGACGGATTCTTGAAAGTCTCTGGGTAAAGATAAAAGGAACAGAGAATAAAGAAGATCTCACAGCA-GGGCTGGTGACAGATCTGCAAATCAGGAAGTCA-GGAAGATGAACTGGAGCAGAGCCAAGTCTCCTCATCCGGGGAGATGGTCCATAGATTCTAACTACCCAGTTAACTTCCAGTGAACTCACTCAGGAGAGCAGGACTGGAAAC--ACGAAACATCAGTTTAATTCTCTCAGTAAATGATGCAAAAAAAGAGAAGTGAGAATTTGGAAAATGGTCTTACATTTTA---AAGATCCCATAAACCACTTGAATGTATCATCCTGTAGAAGAACAGTCCTGGTTTAGCCAGATTCTAGGTATGGATATTAGTCCAAAATGTCAAAATATCACACTTACCATGTCGATAAGTCTGATGGTACGTAT
s HiC_scaffold_1 129093969 2652 + 233722169 ACTTCTATTTAGTTGGCTCTCTTCTAATCTCTCTGAAGCTAAACTCCAAGCTCTGTGAGGTTGCAGAccttgtttgttttgtgacagaAGCATCTCTAGGCTCTAGTACTTGGCCTTTGCACATTGTAGggatttaataaatgtttgttaattAACTCA--GTGTTCTATCTTGTATGTCATCCTGTCACCCTATGTTTAGTACATATTGCAAATCTGAATAGGTTTCTAAATCAGCTCCCTTCTGAACTTCCTC----ATTTCTATTCATGGCAATATCATTTGCTCATTCACATGGGCTTTGGTGGTTTGAGTTATCTCGGGTATCTCTTATTTTTCCCATCCTGTCAGTCACCAGGTCC----AGGTAACCCTCTCTGAGTCATGCTGATTATAGTCTCTTTGGCCTTC----CCTTTTCCCACACCATCTAGCCCAAGACCCTCTT-----------ACTTCATACTACTAAGACTGTTGCAATGGTTGCTTAACTCCCTCTTAGGCCTTGGGACTTCCTCTtgctaatgtatttattttttgtcttacaGCAAACA-------------AAGGACTTTACTAAGAAAAA---CCAATAGAATTTCTCACTGATAATTACTGAGTTCAGACTTAGATTTACTTGCAGACAAGCTAAAAATTA-TTCATGCTTAGCATATCAGTCTTAATGCCTGTTTTGCACGAT-GCAAGTTCCCTGCGTTAGGCAGGCTGGTTTCATTGACAGTTCTTGCAAATGCCACGTAGggactttgtttttgctttctagcattcatatttctttttctttctttttttttttttatcttatcgGTAtgggggaatcaaactcacgaccgcatgcttgcaatgcaagtgcttgtgccactgagctaaatccccagcccacatagTTTCTTAATGTCTTCCAGTCAAATACTGTAAATCTTACTCTAAA--TTCTGTTTTCCactagtttttttatttgtttgtgttgtttGAATGATT---GTGTTTTTCCCTCC-----------TTATGTAAAATTTCCTGAC-------CTGGAATACTCAGTCTATCATGCATAAGGACCATATTCTGTATACTGTTTGGTAGAGAGTGTAGCATAGTACTCAAACATAGAGCTTGCAACCAGGTGGCTGATTTCAAATCTTGACTTCAAATGAACTCAAATCCTGCCATTCACCAGCTTGGTGACTTTAGGCTAGTAACTAAATCCCTCTGTGACTTTAT---CTTATCATTACATCAAGGTTGGAGATGATGCATATCTCACAAGATTGCTGAGAGGACTGAATGAGTCATTTTGTATAAAAC--TGTATAGCAAAGG----TACTCAGTAAGTG---------------CATTTTGATGAATG-------GAACCAAAC-----------------------------------GCTTGAGACAGGATGTGGTGCTGCttcctata-------------------------------------------atcac------------------------------------------------------------agcactctggaag------gccgaggcaggaggattgcaagagTTCAAGta-----------cagcttgggcaa----------tttagtgagatcctgtct--caaaaagaaaaataaaaaagtgatgaTA--------------------------------TAGCTATCCTAGTGC--CAAGACCCTGGGTG-AAACACCACTAttgt-aaaataaacaga------------------------------------------------aaaacaaa-------------------cccatcccctttat------tttttcccacatgtaattagaaaaatttccttttgatGTTTTAAGTCAGTAGTGTCTCAATTTTCCCACGAAGCTC----CCCAC--CCTGCATTCCAGGGCATCATTATTTGTTATAGAGTGGCAGGTGGTGAGTGTGAAAGGAGGCAGCTGCTTCTGTGGTGTGCTGGTGTGTGGAGAAATACTGAGGATGGGAGAAGTCtctcaaaataatgttttaactCTTGTTCCAAGAGACTTTTAGTGTT---------------------TTTGCTTG-CTGGATGATCACAGTCCCTTGTTAGAAGTGAAAAGACAGGCTAGATTGAGAGGAAAGGGAGACGAGTAAATG--AGATAGAAAGCCAAA---TTATcataggggaaaggaaaatcaGAAGCTAGAAACTGACTTAGGAACAATAAAGCTATtagattaaaaatgaataagagaTGGAGCcatacaaaataaatttgatttttcaagGCAAGAAACTGTGACTCATTTAGTCTTTGAGAAGCAGAATATTacccaaaacagtaaaaataatgagTACAGAAGGGTATATGATATGGCCAGCTATGGGAATTTCTAGGCTGGCTTCTGTGCTAATTATTAAGTATCCCAGCTCTCATTCTATATGCAAACTACACATCCATAAACCTCTCTGTAGCAAGATGAGACATAGGAAGATATTCAAATACCAAAGCAACTATGGAAATGGtaggaacaaagaaaaattctTGAAAGTCTCTGGGTAAAGATAAAAGGAACACAGAATAAAGAATATCTCGCAGCAGGGGCCTGTGACAGATCTCCAAATCAGGAAGTCAGGGAAGATGAAGTGGAACAGAGCCAAATCTCCACATCCGGAGAGATGGTTCATAGATTTCAACTACCCAGTTAACTTTCAGTTAACTCACTCAGGAGAACAGAACTGGAAGCGTATAAAACATAAGTTGAATTCTCTCAGTAAATGATGC-AAAAAAGAGTAGCAAGAATTTTGAAATTGGTCATACATTTTAAGGAAGATTTTATAGACTACTTCAATATCTCAACTT------GAATAATTCTGGTTTAGCCAGATTCTAAGaatgaaaattattcttaaatattaGGA------ACTGACC-TAATTAgaaatttgattatatatat

a score=18390
s chr3           142935164 737 + 160039680 AACCAAACAAAAAGCAGTAGGCCACTGAATTAGAGTATTGTATATTTTACCTGCTTCAATACAACAAACTCTTCTAAATTTAGGGGTCTTCACTCTTCACATCGTTTCTTATCCATATATATTTATATATAAACTTTTTTTCCTGCACACAAGGTCTAAGCTTT-CGTTCCCAGAGAATTTCATCCTTTT--TTTAGCCAGACAAAATCACAGTGTCAGCCCAGGTCAGGGTGTGGTGAAATCAATTACTGCTCTTTGTAGAAAGAGGAGCAAATAACTTTTTGTGGTCATTTTTAATCTATTGTAAGTGACTTAA-CTCAATTACAAGATGGAACGAGAGCCATGAAAGAGTTTGGCTTCACTCAAAGTCG--GTTGGATT----------TATTTTTCTTT------CAAAGTTCCGTCACTTTTCTCTCTTTCCAGTATCTTAATGACTTGTGCCCTCACAAGGAAAT------------CATGCCGAGC--ATCGGTAAGAGGCTTGGGGACTTTCACATTCCATTTCCTTTCTGCTTCTTACATTTAACATTTCAGGTGTGTTTCTACTACCAGTTCAGTGACATAGGAAGCATGCTGGATTTCCGAAAGGGAGATTTCTCCAACTGCCACAAATCTTGTGATAATATTTGTCATTAGCTCAAGCATTGATCCATAGTTCAAAGGAAATTTACACTTCAGCTCAGCGAGACAAGCTTTTATATTCTCAAGTCTTTGTACCAGAGGACCCAAAGTGAAATAGTCAAACA
s HiC_scaffold_1 129096767 721 + 233722169 AACCAAATAAAAGACAATGAAGCCTTATGTTTGGGTGGTGTGTACCTTATGTATTTCTATGCAACAAACACCTCTAAATTTAAGAGTCTTCAT-----aagccttcttttctttttttttgtctgttcatAAGGTTCT-----------CAAAGGCTAGGGTTGGAATTAACACAAAATTATTTCCTCTTCATTTGGTCAAATCAAGTGCCAGTGTCAGT----------GGGTGGGAAAATTGATTCTTCCTCTTAGT-----GAGGA----ATTTTTCTGTGtggccattttgattttatttta--taatttaggcTCAATTACAAAATATA-TGACAGTCATAAAAGAATT------CACTTAAAAACACTGCTAAATTGTCTTCAAAGTATTATTATTTGTGTAGCcaaacaattttcttttcctcctttgccAGTGTGGTCTTGGCATAAGTTCTCATGAGGAAATTCAGGATTCTAGCATCCTGGGTCAGTTGGCAGGGTGTTTGAGACATTGGCAAAGCTACTTCCTTTCAGCTCTTTGAATTAAATATCCCAGGTATGGATCTGCTACCAATTCAATGATGTATAAAGTACACTGAATTTCTGAAA--GAATTTTCTGCA--TATCATAAATTTTGTGATAATGCTTGTCATTAGCTCAAGCACTgatctacaatttaaaaaaa---tacacttcAAATCAGTAACAC-agtttttatcttcttgaatctTGGTCCCTGAGGGtctaaagagaaataataaagca

a score=38972
s chr3           142935969 1274 + 160039680 TCAGATAGCTCAAGGACATTCTCATGAGAACTCAGCAGCCTTA---TGCCCCAGAGAGCAGCTATTGTTTGTGGCGTGCAGTCTCTTTGGTAGCTCTCCAGTGTTTGGTTTCTCTTCGCTAAGCAGAGACAACATATGTAACAT-TGTTTCCTGTCTTTGGcctga---tagccatttccgtggtagcccctgcaccgctccctaccacctaggctaattggttcagaactgtcacctgacctgaaatgggccaatcagtttgccactcttaaggactagaaatGTTGAAAGA----AGACAGTGTTGATGGGCAGGCTGGTAGCTGAGGCACATCACAGAAGCA--------GGGGAAAGAAGCCCTCACCTCCCGC------------AGAGAAAGTATCCAGGGGCCCC------------AACTTCCCT------GTGCCTT------GGTTTAGCTTTCCCTTA--AAGTCTCTCAGATATTCC----AGAATTCTTCAAATGCATTCTCT---------CAAACGAGTAGAGCTC-------TTATTTATTATTGAAAGAAACTTAAGTGACAGAGCCACAATCCTGACTATGTGGTTAAAGTAAGTGGTTTATCTAGATGCCATTTCATTCTTTCTTTCATTTGACAGTCATTTATTGGGACCTATTACAGGTCCGGGATAGAGATAGGCACTCAGATAAGACAGGAGGAGGAAGTGTGGGGAGATGGTCCTGCACACAGGTAATTACTCTAAATTACGACCACGCTCTGGTGGACTTAC--AAAGCGATGAGAGCGAACACATGAGAGTGTGAGTGAATTTATTGGGAGGTCGCAGAACCAGGGTTAACCAGCTCGGGCAAGGATATAAGTTAAAGACTAAATCAAAACTACACAGAAAATT----CTGATTACATTCCAGGAGCagcaaatgaagagtttct--acagagactgaagaccagctgttctcagtatcgactccgctctgcagagtggaaactgattt-aaccgcagcatgagagacttagattataaatggaagaatttcctgacatcgagagttgttaatgttggggaggtcatagaatctttgccaccggaggttttcaaaataacatagctcttcatctgcctg-gatgacattattgtgatgctgtctaaaatagggagaggaaagacaatcactcaaggtcttccctcagctTAGACATTTTTATATACTGTCAtttttaaagactttattttttagagaaattttagtttctc-------tgagagaaaggtacagagatttctagta-------taccttgcacccagacaggcacaatctcctttcttatcaatgcctccaccagagtg
s HiC_scaffold_1 129099476 1292 + 233722169 TCATGCAGCTCTGTGACATCCTCACCAGAACACAACAGTGATGATGTACCCGAGAAATCAGCAATTGTTTCTAGAAAACA-TCTCGATGGTGGTTTCACAAAACATGGTTTCTCTTTAGGGAACTGC--CAATATACACAGCATGTCTCTCTTGACCCTGCCCTGACATTAGTCAGCTCAGT------------------CTCTAGGCCCATAGTTAAATGGTTCAGAAGTGTCACCTGACCTAGGTTAGGCCAATCAGTTCATCTCTCTTATTACCTGGAAATATTGCAGGACGAGAAACACGATTGTTGGAAGGGCCA-TAACTT-------TTGCAGAGGCAATACTCTTGCTCAAACCCACCCTCCCCTTTTactttttcagtgctgaggagaGAACCCAAGGACCTCCCACATGCTGGTAATTTTTCTACCACAGAGCCATCCCTGGAGTTCATCCTATCCTTTCTGAGCCTTTTAGTTCTTACTTTGAGTATTct---aatacattttctgtttttgttcataTGACTACAGCTGATGGCTGTTACTTTTTATTGAAAGAAACTTAACTGGCAGAGG---ATAGCTAACCATGC------------------------ATGGGCTTTCACTTGTTCTTTCATTTGACAGTCATTTATTGGGGCCTATTGTACATCAGCCAAAGAGACAAGCATGCAAGTAAGA-------AGGGGCTGTTGAGGGATGGTCCTGCAAATGTGTAATTACACTAAACTGTGATAATGCCGTAGTGGAGATACTTAGAGTGATGTGGGAGCACAGATAAGGGTATGAATAACTCTG--AGTAGGCTCCAGAACTGGGGTGAGTCAGCTTGGACAAGGGTATAAACTAAAGACTAATTCAAAACTACACAGAATATTCAACCTTATTACACTGCAGTATCAGGGAATGAAGGATTTCTGCACAGAGACTGAAGACCAGCTGTTCTCAGTATTGATTCGGctctgcagaggagaaactgatTTGAACAGCAGCATGTGAGACTTAGATTATAGATGAGAGACTTTCCCGACAGTGAGAATTGTTAATGTT-GGGAGATTGTAGAATCTTTTCCTctggacatttaaaaaataagatagatCCTCATCTGCCTGAGAAGACATTATTGTGATGCTGTCTAAAGTAGAGAGGTGGACGATCATCACTCAGGGTCTTTTct-agtttggattttttttgtaacagtca--tttaaaaacttt-ttagaaaGAGCAGTTTTAGCTTCACAGCAAAATTGGAGGAAAGTACAGAGATGCCCCACACCCCTCTTCCCCTGCTCCTAGA----------CCTCTCCACTGTCAACACCTCTCCCAGAATG

a score=38044
s chr3           142941056 1186 + 160039680 TTTCAGACTCCTCTCATGGCCCCTCCTAAGATTACCCTGTTCCTTCACCAGAACTATTTGTCTCTATTTCACTTTCTCAATACACCATGTCAGCCAGACAGCAGCAGACGTCTTCCACAGAGCAGCCCTGGTTGTAATTTTCTGCCCTCACGGACATAGAACTAACTTCTCCTGCATGGCTTCATTCTTTCCCTCTCACTCTCAAGTTGACTTTTGTGAGGGCCTAAGTGAGAGTCACAGGCTCCACAGGGAAGAGGACAGGGCTAGCCTTCCACATG--GTACAGTAACAAGCACTCCATACTTTCTGCTACTGTTGTTGTTGTTGTCCCTTTTTAGCCGTGGTGCTCCAGGGATGATTGCATTTGTCTTCATCCCCCCACCCCCATCTCCCCACGAATAC--TTTTCCTGAATCCACCCTTCCTCCCACCCCAGGCTCTGCATATTCATCTCTTTCTTATACTGAGCAATTTGGCTCTACCCAACTCCATGAAAGGGCTCAAGAAAACAAAGTGTTCTTTTGTTTCTGAATGTAGTTCTTGCTCAATAACCATCATTTTT--AGTTTGAACATGTCCCTTGAGGTC------CTCATCCCAAGTAGCTCATTAGAAACATCTCTTTGAAAGTAT--GGAAACACTCTTACAAGAATATCACACAAGCCTCCAAGACAGTAGAAATGCCTCCCTGC---------TAGGTCCCAGGCACACTGGCTCTCCTCCCGTGCCTGTCATATTCCTTGTTCTCTCTTATTGCATGTGTGTATA-AGCTGCCAACTTCCCCTGGAACGCTTTGAAGATAGCCAGTGTTAGCTACAGTTCATGGACTTGACTCGGACAAAACCAAAACAAAGCAAAATAAAACTCTCCCTAATTATATCATGACTGAATTCAGCAG----------CGTCACAGGATAAAGTTCACTGCATTGGTCTCCAGGGGATTAGAGAGAAAAC-AATTTCAGCTTCTAAAAGTGCT-TCTCAGGGCTTCCAGTGAAGGCTTGTATGGGACATGAAAGGACTCCAGGAATTAAACAGCTTTCAGCTTGGTTCTAAATTCAGGAATTAATATAATTAATCAAAGCTGCAGCTCACAGTTCCTTTGAAAACAATATGCAGAGTACGTGGCCTCTTCACGAAGTCCACACAATCTTATTAGTTTGAAAGTCAGTCATATCCAATTAGCCCGCTGAttt--ttttaaaaa
s HiC_scaffold_1 129118018 1143 + 233722169 TTTCAGACTGCTCACATGGCTCCTTGTAAAATGCCTCTGCATCTTCCCCCACACTCATACCTTCTGC----CTTTCCTCGTGCAC--TGTCAGCC------CAGTTGTCCCCTCTTCAAAGGCAGACTTCGTTTTAATTTTACACCC-CATGGATATAGAACT-------CTTGCATATCTTCACATTTTCTTCCCC-----CAAGtctgcttttttaaaagtcttagcGAGAAACacagaattcacagaggagatgAAAAGGATATTTTATCACAAGCAGTATGGTAACAACcatttgacatttttttcc--------ttccaaagtTCTTTCTCAGCTGTGACACtccagagatttttgtttttgtctttatcgTCCC----------CCTAAGGTATACAGTCTTCCTGGCTACGCCCCCTCCGTGCACCGAGGTTCTTCACATTTATCTCTTTATTATACTGAGCAATATGGCTTTACCCAGCTCCATCAAAAGGCTCAGCAAAACAAAGTGTTC---TATTTCTAgattcttttcttgtttaatGACCATCATTTTTAAAGCTGGAATATGTCCCTTGAGGTCTCACCTCTCATCTCAAGTAgcttatta-aaacatttctttaaaaatatcggGTAAGAGTTTTAGCGGAATG--GTACCAGCTGCTAAG--AGAAGAAACGTTTCTTTGCTTTGTTACATGAATTTCAGCCATATTGGCTTTCTGGCAGTTCTCAGAGTGTCCCTTATTCTC-CTCA----ATGTCTGCACATAGCAGCCAAATTTGTCTGGAACACTTTAAAGAGAACTAGTGTTACATGTAATTCATGAGCCTGACTTAGACAA----AAAACA----------------TTCCTAATTGTATCATGACTCATTTCAGCAGTTTTAATCATCTTTGCATGATGAAATTCACAGCATTGGTCTCTAAGGGATTAGGAACAAAActaattttagtttctaaaaGTGATGTTTCAAAACTTCCAATGAA-GTTTATACAGGGCATGAAAGGGGTCTGAGAATGAAAGAAATCTTCGTTTGATTGGAAATCCAAGAATCAGTATAATTCATCAAAACTGCAATCCGTGATCCCTTAGAAAACATTATACAGAACACATGG-CTTGGCATTCAGTCCACAAAAACATCCTGATTTGAAAGTTGGTCACATTTAGACAG---ACtaatttacttttgaaaa

a score=11595
s chr3           142942561 805 + 160039680 tccttccTTCCATAGCAGAGGTAGCAGAAGACAGGGGCTTCTCTGAGGAGCCTAAGTGTGATGGAGCTTTGGTCCCAGTCCCCACCTCGGCTTCTTTTAGCCATATGAACTTCATGATACTGACTTCT-AAGCTATTCCCATACTTGTAACAAAAGCATAA---CTCCATCCTAGGATTTCCGTGAGGATCAAGTTAGATACTCAAAAAGGTTTTGGCAAAGCCCTTGCTATGTATCTAACCCTCAGAATGTATCAACTTCAAAGAATTTGTTAAACATTTGGAAGAATACATTAAATATTTGTAGTGGAGAATCCAGGCTTAGGCTAAAA---------------------------------TAGCGAGAGAGGAAAGGGGGCAG---------------------------------------------------------------------TCATTGCATGGGACTCAAGGATACAG-------CTTAAGAGATGGTCCACTCGGCCAGGAACAAAACAGAAAGAGTTCCATTTGA-----GAGTGGGCAGCTGGGAACTCCACTACAATAAGGAAACTATTATGTCTTAGACACCTGCTTGGTGCTTCACTAGCCACACCCTCTCTAGCTTCTAGTCCTTGGCCTTTT-------GTCTTTTTGTATGTGTGTATGAGTGTACATGTTCATGTTATCAGATATCTGCATGGCTCTTCTTA-GTTAATTAAAGACTCGGCTAGAATGATGTTCTTTAC----------ATCAAGGCAGAATTGCCCCCCCCACTGGCCCTTTAATTTCCTATCTTCAGTTATGATGCTAATTACATAGACTACTTTATATTTCTTCTCAATGTT--TTCCACTGAGACTGCAATACGTGTTCTCATTTATCCACTATAGAATGACGACTTGAAGGCAGAGGATGTCTT
s HiC_scaffold_1 129126705 856 + 233722169 TCCTGCTTCACTTGGCAAGAATAG-----AATAGTGATTAATCTGATGGGCATAACTATGA-GCAGCTTGGATGTCA------ACTCAGCCTTCCATTAGCCAGATGAGCTTGACCATGTTAACCTCTGAAGCTGGTTCCCCACTCAGAACATAATAACAAAAGCCATATCTTAGAACTTTCGAGGGGATCACTTAAAATACTCAAAGTG--TTTGATCAAGTACTGGATATGTATCTAGC----AATGTGtcttaactttaaaaaa----------------gagGACACTTTATGAACTTGAGGAGGTGA-TCTAGGCTTATGctagaaggaaggaggagagagagaaagagggaaggaaagtggtgagaagaaaaaggagacaacagggaagaggagaggagaggaaaagggaggaggggagagaaagagaagggaggggagaggggtgAGGTTCATGGTATGGAAATGTAGAGGAAAAGGAGTGTTTTACGACACGGTCCACTAAGTTGAAAACAT----GAGTTAGTACAACTTGGTTGCCAAGTGGGCAGCTGGAAAAACCACTGCTGCAAAGGAACTATTATGTCTTGAATGTCTGCTG----------TGACCAGACATCCTGTGTGCTCTAGGCCTTGCCatttttttcctggtctttttgCAAGTCTTTCT--------------------CCAGACATCTGTATAGTTATCCTTCTGTTCATTCAGGACTGGG-----ATGAGGCCCCTCCCTGGCAAACTTATTGAAAAAGGGACTCTTCCCCC------------AGTTCCTGTCTTCAATTATAATGATAATTACTTACTctattttgtgtttcttcttgGCACTTATACTGTTGATGCTGTCACACTTATCTTCA-TTAGTCATTATATTTTTGTTGCATGAGAGCACAGAGTATCTT

a score=20361
s chr3           142945164 1139 + 160039680 aaaaagaacagaaaTCCTTTGCATACAGTTA-GGAAGGAGGTGTTCTTGCACATCTGAGATGACCAAGTTGTCCCTATACTGCTTTCTTCTGGGCTCATGGTAACTGATAGAAATGAA---GTTCTCCTTAATCTTGGCACTCAGTGCTCCACCCTAAGTGTTTGAAGTCTCAAACATAGAAGAAAGGACTCCTCTAATGAGCGTGTTTTCTTCACTA-----------------GAGTATAT-------------AACTCTT----GGCAATATACTTTGCCAGATGGTCAGCATCTGTGAAAGGTAGACAGACATCCATGCTTGTGTGTAATACA-----------------------GAGGAAGCTGGGCTACATGCCTTTTCCCGTTCTGCTGAGGTTT--GCTTTGACAAATCTTTTGAAAAGTACTTGTAAGTGTTGACATATGCTTTGTACCATAGATCCATGCACATACGATTCAACATGAAGGAAACAAGTGGAG-------GTGATGGT-------------ATGGGTTTGCCCTGCAGCAGTTGGCCAGCATGCTGGATCATGAACACCTGAACACACTAAACAGCAGATTTAGGTGGAGTCTACTCTGTG------TTGTAAGAAAGAGATTTGCCTTAGTGACTGAGTTTCGGCACCATTGGTCTATGCTAGAGTCCACGGAAGAGAGAGCCGCCATCAGGTTTAATTTCAGAGCAAAGGTCTCTGATTATTGCTCTATCAAATAGAACTTCAGTGTGGCTGTGCATGTTAGGAAGTCCAAATCATAATGACTGAAGTAAGATGGGTCTTTATAATTTTTTTATATGGAACAGAAAGTCTAGAGGAAGCAGTGACCGGTT--GGGTTTGAGAGTGCATCACACACCAACTTCTTTGCAGCTACACTTAGGCTTTAACGCTCTATCAAATGTGAAAGACTGCTGTGCCACTTGC---TCTGTCCGCACCGAAGGATGCTC---GGAGAAAGACCAAAGGGCACAAAGAACATGC----------TCCTCACATGTTCTCTTTAAGGGA-TTTCTCTTTTCCTACTTTCAAACATGCGCTTATATCGCTTAGATCTTTAGATACCTCTGCCTGACAAGAGGGTTAGAAAGTCTAGGCTTTTATTAGTGGGGTGACTTTGCCTTCATCTGACAACAAA-CAAAGGTTTTGTTA-----GAACACTGGGAGAATGGATAGGTGTTGAACCATCTAGCTGTCTTA
s HiC_scaffold_1 129127891 1190 + 233722169 aaaaagaacagaGATCCCATATATAAAGTTAAGGAAATAGGTGCTCTTTGGTGTCTGGAATAAGCAGAATGTCAGTACA----GCTCTTCTGCACTCACAGTGGTTGGTGAAAGTGAACAGGTTTTCACTGACTGTGCCTCTCCCTCTCTTATCCCAAGTGTTTGAA-TCCCAACTTCAGAAAAACT--CTCATCAAATAAA--TGTTTGCTTGATTATAAGCTCTTTGAGAATGGAGGCTATGTCTTAACCTCCAAATCCTTTAGAGTCTTTAGCCTTTGCCAGTTGTTTGGTGCCTATAAATGG----CAGACATTTATGTTTGCAAGCATTGCAagagtggggtgtgtgtgtgtgagggggagtTTGGGCTCAATGCTGTCTGCCATTCTGCCTGCCTTTTAGAGTTGATGAATCTTTTGAAAAGTACTTGAAAGTATCGATTCATGTTTATTAAAGTAGACTCACAGCCATCAAAACCAGCGTGAGGGAAACTGAAGAAGGGCCAGAGTGACGGTTCACACAGGGCTCACGGACTTA--CTGCAACAGCCCAC--ATATGTATGAGCATGAG-------------TATGCAGCATCAGTAGATGGACCCTACGGTATGACTACTTCATGCAAAAGAGCGTTGACTTCTTGACTGAGTCAAAGCCCTAATGTTCTG---TATATTCTATGGAAGACATGACTA--AGCACGtatgattttagaggaaatatcTTGTCTGACTATTTTAT-AAGTAGAAATTAAATTTGACTGTGTGTTACAAAAACTCCTAACAGCAGTTGTTTGAGTCAGGCAGTT-----TGCTtttgttaaatgaaacaaaatctgGAGAGCAATCAGGGATAGTATAGAGGCTCAAGGCTGTGATGT-CTTTAAGATCTTCTGAGTTCCTCTCAGCCTTTCTCTTGTGCTCAAATGCAACAGGCTTCTGGAACAATTGCCATTATGTCTGCATTTTAGGAAGCATTAAGGAGGAGGAACAATGGACACAAAGGACATACCAGCTGAAATTCCCCTC----CCTCTTGAAGGCATTTTCCCCTTTCCTGCCTCCAAACATGTGCTTATAACA----------TGGATACCTCTACCTATAAAGAAGGCTggaaaattta-gtttttatta-----gttaCTTTGTCTTTACCTCTCAACAAAGTGAAGACTTTGTCAGTGAGGAACAGTAAGTGAGTAAGTGGATGCTGAATAaac-acctgtctta

a score=33553
s chr3           142948055 2211 + 160039680 AGAGGATGTCTATGCAGTTTTCCTAGACAAGCTTTGAGTTAACTGCT------GTATTTTACAGTCTTTCCCAGGGATATGGGATTTTATCATCTCACACAAGCTG-GGTCTGGAGAATAGACACCTTCCTGTACTTGC-ATTGAGTTTAGTTCAGA-GGCAATCAGGTATGAATAAGAAAAGGATCCACGTATGAACTCTAGGGTAAGACTGGCACAGTTCAGATAGAAGGGCTTTAGGCACAGAGAATCTTGTTGATAAAGTTCAGGGCCACACTGCCAACATAAAAGCCATTGGCACCCTGTGACTTAATGGCTCTGGGCAGTATGGACA---------------------------TGGGACAGATGACATGTGTAGTCAGGAGGCTGATCTCA--GGTGACTACATT-----ACATGGAGAGGTGTTGAGGGCAGAATTTCTAAGGTAAGATTCATTGGAATCTCATTCCTTCAAAGATTTAGTCTACAGATTTtatatacacacactcacacacaaccacatacgcacgcgcgcgcgcgcgcacacacacacacacacacacacacaGAATCGGATGTTTGGGAAATGCTGAGACTCTCTCTCCCTTTCTTTTGAAGACTTACAATGTAGAGCAA-----TAAGGGGCTTCATAAAAACCAGCTTAACTTTGTTTAGGAAGTTGACATAATGTGAAGCTGT-CAACTGACCAGGATTTTGCTACTTCGATTTTTGTCTCTTATCCTGTGCAGGAAATATTT----AGTGTCTACTGTAAGAAAACTGAGAAAACAGCCAATGAGTTAATAATTATTCTAGGGAATGCGAACG-ATTTTTACGTAAAAGAAAGAGAA---------ATGTGAGGCTGGGTTATT--GTCTGGGGTCACCTTAGTAAGTAATGC--------GTAGCTCAGAAAGCTTAAAAATGTCTGAAACATGCATTGGAGAAGCAGTGTACCACCTAGTGGCGGGTCTTGAAAGTGCAGCCATGGA---------GTTTTCCACTCTCTAGAAATACAGAAGAAAAGCATCATCC--CAGAGTCCCAGATCCCTGAAAAACAGATGAAGTCTAAATAAGACATCCATTTTTCAAAAAATTCAATTGAAAAACAGAGATCACGTGTTAATTTTATA----CTAGAAGTTACAAGTTGGTAAATAAAACGATAAT-------------------AAATCAAAATATTTCCCCTCACATTTTAAACAAATTTATACATAACCATAAATATTTCATACCATAATTTGTACTGTAATTGATGTTTATTGTGA--ATCGTT-----------CTTTGTATCTCACATAAAAATCA--TATGTATTTATTACTGTAAATGGATGAACTGTTTTAACATTATTGAATACTATTTT-CATGTATGGATATAGGATATACCATTTATTAAC-CTTTACCCATTTATTTGAAAAATTTCATGATTAGCCTTTACAATTAGGCTTTTACAATAGCCTCTGTATTTTTGACTTATTTACTTCATTATAGTTAGGTCTTGGAAGAGAAAAATCTTTGT--CAAGGATGCACACA--TAAACTTTAAAAGTTCCTCTCAAAGAGAGGGTGTACTGAGTTTC----------------TTCCCCTTAGAGTGGTTTCGTGATTTCTCTTCTCACACTCTCCTCTGCTGACTGGCACCCCG-GATCAAATGTGTCTGTCTGAAGACCAGGATGAATCCTTGTTTTAGTGTGGATTTCTTTGATTAACTTCCTTCTGTGCTAAAACTTGTTTCATTTTTAATGTGTTTG----CTCCTGGCTGTCTGCTTCCCGTTCCTTTGTGACAATGCAGCTGTTCTCGTTCTTTCTTCTCCCTCCTGGGGTTTGGGGCTCCTTCACACTGGCTCACTCAGAGAAT-CCTTTCAGGTGTTTTTTATCTGTTATTTCAttttaattttgaactaattctagactaacagaagc-tggaaaagtagtaccgatagttcctgtgtgtctgttacccagatatctatcgcgtgtcactctta-atatccctggaacaatgatcagagccaggaaatcaa------caaggt-------------------acagtgct-------------ttgtttg------ttccgtttcctgttctaagaactgatctcggatcccgtgatttgttatcgaacagttatttctttgatgttctccatcctctaatcattgatcg--tttttaagctcttatggccttcctactt----------gattcacta-catatagaacgttcctctttttctgtttgtaa-atgttttctgatgactgaagtgaggttgagcatttgaggcaagaaccctacag-aGCAACAGGCATCCTGCAACT----GTACATC
s HiC_scaffold_1 129131210 2201 + 233722169 AAATGACATTTTCGAAGTTTGCCTTGATGAGTGACGAATGAACTCATACACATGTATTTAATAGACATTCC-AGGGAAATGAGATTCTCTTAGCTCATGTGAACTGCAGGCTGGAGAGTATGCAGATTC--GTACTTATGATTGCATTTAGCTCAAACTGGAATCAAGTGTGAATAGGAAAGGGAGCTGCTTAACACCTGTAAG--AAGAC--GAACAGCTCTTAAAGAAGTGCTTTAAGTTCACAGCAG-TTGTTGACAGATTTCAGCACCTGACCGTCAACATAATAGCAGGTGCCAGTTTGGGACTTGATATCCCTGAGGAATATGAAAAGCTGTGCCTCTGAAGTCCATAAGGCAGTGAAAAAGACTGCAGCTACAGCTAGG----TTAACTCGAGGGTGATTATATTGAATAAGATGCACAGCTGTTGAGGACAGGATTTCCCAAATCATATTTTATAAGATGTCATACATTCAATGATGCCGtat-------taaaaaaaggagaatcaAATACAG--------------------------------------------------------------TTGGGAAATGTTGA-------CCTTCTCTTATTTTTGTGATTTACAACACAGAGCATCATATTAAAGGCCACCATGAAGCCAGCTTTCACTTTGTGTAGAAAGATGAGAAGATATGAAGCtgttcaatttttcatgcctctgccatttctattttta---attgtcttatttgtcaaatatttctgaaatgccTATTATAAGACAGTGCAACAATTGTGTATTAAGTTATTCGTGATTTGGGTGAAGGCAAAAGCATTTTTatatggaagaagaaaaagaagaggcgATATGGGCTTGGGTTATTATGTCAGGGGTTCC---AGTATGAAGTGCACTTAGCTGTAGCTGA-------TTACGAGGCCTGGAAGCT-CTCGGGAGAAGCAGTGTACCACCTAGCGTCGAGTCCCGAAAGTGCAGCCAGAGCCCTTGCACTGTTTTCCATGCCTTCCCAGTGTGGA--GACAGCGACCTTCGGTACCATCTGAGATCTCTGAAAGACAAATCCAATTCGAATGAGGCCTGAA---TTAAAggaattgtattttaaaagcaag---acatGTTAATTTTAGGGAATATAGGAGctaggaataag--aaaaaaatgaaaatatatatataaaaaacctagaaatatatatatttctgctt---tttt------atctATACATAACTACACGTTTT---CACTATAATATGCACCATAATTAATATTTCCTACGAGTATTATTTatgggaaatatttcattttttacataaTAATGAGCTATTTATGTTTGATTACAAACATAG----tatttaaaagttattatatattctttcatttttatgaacGTATAATCT-TCTCtaatgaacacttaggttgttcaTT-------TTTCATGA-------TTATATTAACACTGCAATAAACATTCTTGTATTCctgacatatttatttt-tcaaaataaattctttgaaGTG-GAAATGTTGGTTCTAAGGATACActcatttaaactttaaaaatttccctgaaaaata-aatttatcaatttACCAATAGCAATTTACAGTCCCTCCTGCTGTGGTTTTGTG-TGCCCCCCCCCACATCCTCACCCACTGAATAGTGTGCAGAAAATGAATGTGCCAATCTGAAGATAAGCATATGTCAgaattttaatctgcatttctttgattagtttc-------------atttgtttc-ttttttctgtgattGGCTTATTCACACTGtttgcttccttttc------------------------------------------------------ctcttttatacTTGTTCACAAGCAGATTGCTTTTTGGGTGTGTT-----Tgttgttgcatttttattttgaact-atTTTAGACTAACAAAAGTATACAGTAATAGTGTATAGAGTTTCT-TATGCTCATTACCCA---ACTTCTAATGTATTAGTCTTACATAACAATAATACAATTAACAAAACCAGGAAATTAATCTTGGCAAAGTAATGTTAACTAAATGATAGACAGTATTCAAATTTCACCCATTTTTtggcttattttccttttctgttcaaagattcaatccaggATGCCAAAGTATACTATTTGGCTGttatttctttcatcttctctATTCTGTAACCGTTGCTCAACCTTTTTGTCCTTCATGACCTTGATACTTTAAGAGAATGGGTCCGTAATTTTATAAACTGTTCCTCAGTTTGCGTTAGTCATGTGTCTTCTCATGGGCAGAATGAGACTATGCATTTTGGACAAGAATTCCACAGAAGTGATAGATATTTTGCCATTTGCAGTACATC

a score=34831
s chr3           142954257 858 + 160039680 CATGTCAAAAATGGTT--CAGAATTGCTTGATGAAAGCCCTAAACCTGTGGAAGATCTTTTAAAGGAACATTGGAGGAT-AAACATGGTGGGTTCCTGCCTATTTACAAACAACCAGCTATGAGCTTATGACTGTTGAGATTGCAATGTTCTCCTCTGTCCCCCTCATATGACTTTCTCATATCTGTACAAACAGG----AACATTCAGAGAAAGATTTCCATTGTTCAAAATACAAATTGGCCTATGTTAGGATCATGTT-----------ACCCACATGATCTTAGACAAGTCAGGATATTCATGCAGGGCTCACATGCCCAGCCTGTTTCTTAGAGCAAGGTCAGTTGGTAAAACACGAGTGAAGGAGATCTACCAA--GCAAGACAA----CACATGCAGGGTATTATTCACGC-------TCGTGTTTCAACCCTAGG-----CTCACAGGTGCTAAGTACTGGTCATCGTGATACCAATTT-GTATATAATGGATGAAGGATTCATACAGAGTATACGGCATGTGCTCTA-TAGATTCTCTTTTTGTAATATACGGTATTGGGTTTGATTCATTT-----------TCCTGGTGCAACTTCCCACTACACTTTGACAAACAAGGAATGAGCTGCTTATCTGGTGGGGATTTATAGCACAGGGAGTCCACAGTCTTGG-AAGATGTCATTGGCAGTGTAAATAGCAAGGTTAACATGGTTGTTTGCGAAATAAATACAAACTTCAGTTAGTATTTCATCTTGAAAACCAGCTTAAGAGTGCTTTAGATAACCTCTTATAATTGAAGTCCTTATAGAAGCTTGGCCTTTATATTGAGTTTCGTCAAATACAAGGTCAGGCAGAAATTCTAACATTAATCAGTTCAAACTAGTGCCTATTGTCTT
s HiC_scaffold_1 129133825 880 + 233722169 CATATAAGAAATTTTCTGCAACATTGCTTGATGAAAACTTTAAATCTGCCAGCTATCATTTGAAGAAATATTACATGATGAAAGaatatgtttttctatttatttatactaGATCAATTAAACTCTTATGAGTGTTGACATTGTAATATCCTTTT--------------TGCATATCTCATATTCCTGGAGAAGAGTGATAGCAT-CACAGAAAGAGTTCAATtgtccaggaaaaaaaattcactgt-tgagttccaagttttccttttcatagccatatgaccttgggcaaatcaGGTCATTTGTAGAGATCCCAGATTCCC----TGTCTCATA-----AGGACAGCTTGTAGAGGAATGGAAAAAGAGGTTTATAACTTATAAAACAATTAGCACTTGCAAGGGATTAGTTACATCATATTATCTTTTATTGGTGCTTGATAATTCTCGAAGGTG-TAAGTGTTGGTGATTGCCATACCAATTTTGTTTCTAATGGATATAGAATTATTACAGAGTATATGGTATGTACTataacacattttgtttttgtaatacaCAGTATTGCATTTGATTCATTTCGACATTATTTTCCTGGTATAACTTCCTACCACACT--GACAAACAAGGAATGAGCTGCTTATCTGGTAAAGATTTATTGCATTGGGATCCTATAGTCTGGGGAAGATGTCATTGGCAGTGTAAATAGCAAGGTTAACATGGCTgtttatgaaataaatacaaacttcTGTTAGTATTTCATCTTGAAAACCAGCTTAAGCGCTCTTTAGATAACCTCTTATAATTGAAGTCCTTTTATAAGCTTAGCCTTTATATTGAGTTTTGTCAAATTCAAGGTCAGACAGAAACTCTAACATTAATCGGTTCAAAATTGTGGCTACTGTCTT

a score=19720
s chr3           142955363 812 + 160039680 CTTTTCATCTTTT-AGAGCAATCAAATGAAATATTCCCCTAGCTTCCCTAATCGAAGCTGTCTGTCTGCTCTGCCCCAGTACTAAAAAACGCATGTTTCAATAAGTGTTCCTATGTGACAGTAAGTTTTCCAACCTTTTAAAAAGTACCTTATACGGAAGTTTCAAAACAAGACCCCTAAATCCAATTCCAGCACATTTTCCAGTTGTATACTTACCATCAGGAGGGATACATGTCTGCATATATGTGCAGTGAATTGTACATATTATTACATGTGTATATACTAAGGTGATTGAGAGAAGTA-TCGTTTGATGTTAAGTAGGACACCAATCATGGTAGCTTTTATCTTTGCTTTTTTATGTCCATTGTTTTAAGGCTA--CTACACTCAG-GGAATTAGGGCTTGAAACAAGATTTAAATTTTAAGATGGCTCATTGCCTATCatatacagtatatatatatatatatatatatatataAAAGAAGATATCCT--------CTGCATGTTAGACCATTGGGTAATAGTTAGATTGAAAGACATTTGCAGCTGGGG-----------------CTTTTATTTTGTGAAACTACACAGTACACCCATTCTC----AAATGCA-TATCTTcactcacacacacacacacacacacacacacacacacTTTTTTGTGGTCTT--------------------CTTTTCCTGTG-----TTCCAGAAAG-----CCTTTACTCATGGTATCATGGCAACCCATTCTGTGATA-GTTTTCAGTGTTGTGC-----------ATGGCACAGGCCACTTCTG-AGAACTCACAGTAACAGAAAGCAGCACTTGGGTCATCCAGCGAC-TGCTGGGAAC---ATGGCAGGACACTGATTGCA
s HiC_scaffold_1 129134904 807 + 233722169 CTTTTCATCTTTTTAGcgcaatcaaatgaaaatatccTCTAGCTTTCCTAATGGAGGCTGTCTG----CTGTGCCTTGGTGTTAAAAA-TGCATGTTTCAATAAGTGCTCCTGTGTGGCAGTAAGTTCTCTggtctttt-aaaagtattttattctgAAGTTTTAAAACAGAACCCTTAAATCAATTTTCAGCATATCTTCAAGTTGTACATTTATTATTAGCAATAATACCT-TATACCTACATGTAC-------TATACAT---------TGTGTACATATTACAGTGATTGAGATAAATATTTGTTAGTTGCTAAGTAGGATATGAGTCATGGtagattttatttttggattttt-------ctattttaatgctAGCATACATTCAACAGAATTATAATGT-AAACATCACTTGAATTTTAAGATCATTAATGGCCTATATT----AGTA---------------------ATGTAAAAGCA-ATAACTTGGCAATGCTTGCTTACTAGATCATTTGTTGGTAACTGATTTGGAGGACATTCACATTCGGGGTTAATGTTAGCGTAGGATTTTTACTTTGTAAAGCT-----GTACTCCCTGTATCCTTAAAATACAGTGTCCTCAAgcccaaaatta------------------------tttttgttttgtttgaattcatgtAAGATTTTACTTTTGCAGTGACATTCTcctaaaaatattccttttttcccTAACAGTATGGTGATTTCTTCTAAGATACATTTTTAGTATTGTGCAGTCACTAAAAAGTGAACTATACACTGCTGTGGTACACACAGCAGGACAGCTCA-CACTTGGGTCTCCGAGTGACTTGCTGAGAATGCGATGACAGGACAGTGGCTGCA

a score=50413
s chr3           142958771 2631 + 160039680 TGTATTTTGGATGTTATCTA-TTTTCCAGTGCAGATGGTATACCCCCCCCCCCCCCAGAATCCCAGGATCATACACCACTATTCTTGCAATGAGACTTGGTGT---CTACATGGCATATTATT-------------CTGTGAAGGCATAGGATGTGTTGTGTCCTGTGGCCTAAGTGGCAAGACTG----------------AGCA----------CATCATGAGTGGGATACGCTGAGTGGTAACTTGCACAATTCTTGGGATATAAGTCAGAGCAATTATCTCTAAATGTGGGATATGCTTTCTCTAGAACTTAGAG-GCCCAGACAGCTGACTTTTATTTTG---GCAAATACAAGATGCTGTA-----AATTAATGACCAAA--TGATCAAGTGTCTCTTGCATACCTATGCTAAGTCATTCTTTTAGCCACAGTAATTGATAAAAGCTGACATAAGATCCAGAAGTCATCGGCATGGAGTGATT-GATCTCTGGTGCTACTCTGGGTGAAATAGGAACACG--GGACTGAAT------TCACACATGGCTGACCGGCCTCTGTGCTTTGATTGTGGTATCCCTGGCTACAGAAACCTGAGGAAATTG-------CTTTACATCCATGAGACCTGTACCCTTTGCCTGTGTATTTGGTACTAAAGCTATGCTGCCTTCCTTAGTGTTCTTAGAGGAATTAACTGAAAACATTAACAGTGTAAACATTGAAAACATTGAAACTTACAACATAC-ACACATATGGATGCttattattaattattatttattattattactattaCTGATATAGTAGTTCTCTTACCTGCCATTAAAACAATGAACTGCAATGCAGTGATACACCAGAATTGCTACAA---GAAGAGAGAGCAGGGAGTTTGCACAGACTGCTGGAAACTATAAATTATAAAACATTAGCATTCTAAGGGACATTCCTGGCAGATGTTTTGGGGACATTTATTATGTTTTAGGCTATTAGAAAAAAAAATCAAATTCCAAATCCTCAATTATTTGCatatatacacatatgtatatatatttgtatatataatgtaatatttatatTTT-ATTAAGTTGGGATATTTTACAGTAtttttaaaaaggatttatttatttattttatgtatacaagtgttctgctttcatgcaccaaaaaaaggggaatcagattttattacagatggtggtgagctaccatatggttgctgggaattgaactcgggacctctggaagagcagttagtgctcgtaaccactgacccatctttctagcccTGATAGTATTTGTTTTTATACCTTTAAAAAAGGATCATTCACAAATTCTGTTTCTCCCAAGGCTCC--CTGT-----CAAAAGCGTGTTTATCCAGTATTTATTTCTATCAATCTCAGTTAATTACTCAGAGACGAGTGTCCCATGTCCACATTATAGTTCATTATTTCTTTAAACTACACCATTAAGGTGATGGGCTTGG----------TGAACATAAAATGCCTTCACTGGGAGGAACTAGTTTATATTCCCACATAAAGACCTTATGCTATGCAACAGCAAACAACAATAAAAATCATTGTTCCAAAAAT-CTTTTTTGACCCTGAAGCATAGATGGTTGCTGAATGGTCAATATTCCAAATGTTTTCTTACCGTCTTGTGAGTGTTCAAATCCAGATCATTTAAACTGCTATTTGTATGATGGGACTATTAAAAAACCCATATATTTGTAAACACTAACATACAAATATATGTGATTCATTGCTGTGTGTCTGGATCACCAGAG-AGATCTCCAGAGTCTCGTTTGTCTGTCCTTCTCCATGTTTTG----TTGGTTTGAG--ACAGAAATCAGATAAGAGAATAGAACAG--TCCGCATGG--TACAAGTTCACCAGCTCACTTCAGTGACCAAAACGTACCAGCCACTTGTCTGTTTCCTCAGTCCGAATGCCACTAATCTCAAATGTTCCATGGAAAAAGGATGTGTTCAGTATAACTTGTGTTCACCATTTACCATGGATTTAGTATTATAGGAGAC-TAAAAATAGGAAACAACTGTTCCTATGATCATGACA-CATAGCCCAGCAAAGGACTATAAACCATGCATAAAGTAGAAGGCAGTGTACTGAGGGCCTCACGAGAGATTTCAACTCATTGATGGTTCGGGGTAGAAGGGTATGTTCATTCTGTGTGTTTGAGCTGTAAGGTGATCTAGAAA----CCTTGAGGTAAAAATATAGA------TAGACATAAAACGTTAAACTCTATTGTCCATTG--GCCTCTTCTTAAGAGTCATATTTTAAGTGAATAAAATAAAAGAAAAACAATT-TAACGAAGGGGAGCTTCTATTATACTAAAACAGTTGTTACAATATaaaattattatatggtaat-aagtatactttgtgt---tattattttaaat--aagctcca--ttctaataaaagaaattg--attttg---aagtggtgattataaatgattcggcaaggctgcaagctctgaaatgtaggatggatgtg---tccagtcagaacaaagtcatacatacatctaa----tatatactttgttactgacattcataatcgaaggaaataattcatttctgttagaagttagtgaaaatcaagatgtacattttttttttcatctaaattcacaagtctcccttacttttatGTCTGAGCTCTTTTGGGGGCAGGGGCGGTTTGTGAATTGCATTTTAGGAAC
s HiC_scaffold_1 129140457 2359 + 233722169 TACATTTTGAAAGGTATCTAATTTTCCACCACGAATAGTGTGCCTTTGTTCT----AGAACCTGAGGATTCCTCACTGTGATCCTCATGTTGAGGTTTTCCATAAATTACACAATATCTTTTCTTACCTGAGATGCCTGTGAAGCCACAGAGCAAGTCATGTCCCATGGCCCAGGTGGCAGAATGGCATGACCTAGACCTGTAGCAGAGCCTTTTCCACTTTGAGCAAGCCTCACAGTTGGCAGCCTTTCATGTTTCCTGGGACATGGCTCAGTGCAGT-ATTTGCAGGTGTGGAAGATGCTTTCTCTTGAACTGAAAGAGCCCTGCCAG---ACATTTACTTTACTAGCAAGTATAAGGTGCTTAACctgtatttgttgaataaaaatgATCCAGTGCCTATTACCTATCTGTAGTAAATCATTCCCTTAACCA-----------AAGAGGTGAAATTAGATTCAGAAATCATCTAAATGGAGATATTCGATCTTTATTTCTTACCTTGGTGGAATAGAAGCATAAAGAACTGAATGTGGATTCAC-TATGCCTGGACG-----CATGCTTTGATTGCATTATT------GACAGGAAT-TGAGAAATTCGGTGGATTATTAACTTCTATAtgctttgt-cttttaatttctatatttggGATAAAAACCTTATTTTCCTCAT-GGTGTTTATGTGAGAATTAAGGTGAAATATTGGCGCT----------AAAATATTGAAAGCTATAGAACATTATACATGTCAGtgtttattattagt-----------attattactaATACT-----AGTAGTTTCCTTGCATGTCATTAGAA-AAGCAAGAGTGAGTCAGAGA-GCACTAAAACAGCTAAAACTAGAAGAGAGAACAGGAAGTTTgcaca---------------tgaatttaaaaaaa----------aatagatattttgtgCGTAAGTTT-GGGGCCATTTCTTTTGCCTTGGGTTCTgctagaaaaaaatga----ttatattcTTGATTATGT-----------CAT-TGAACATATATTTGTA-----------ATAGTTATCTTTTTATTAAATTGAAATCATTTGAAGTATTTT-------------------------------------------CCTTTATAC---------------------------------------------------------------------------------------------------------------------------------------CTTGTTT------------------ATCATTCTTAACTTCAGTTTTTCTCAAGCATCATACTGTGAGCCCACATGTGTGTTTATTTGGAGTTGACTTTTATCAATCTCTGCTAATTATTCAGAGATGAGTGTTCCATTTCTGTGTTATGCTACATTATTTCCTGAAACTACACTATTGAGGTTACAGATCTGGGTATCATCACTGAACGTAAAATACTTTCATTGGGAGGAATTAGTTTATATCCTTGTACAAAGACCTTATGCTATGCAATAGCAAGTCATAATAAAAATCATTGTTCCAAAAATACTTTTTTGATCCTGA-------ATGGTTTTTGAATGGTCAGT-----AAACATATTCTTGCTATCTTGTGAGTTTTTAAGTCCAGATCATTTAAGCTATTATTTGCATGatagagctttaaaaaaa---atctctttg--------------------ctTGTGATTCATTGCTATGTG--TGGGTCACCAAAGAAGATTTCTAG---CTACCTTTTCTGTCTTTGCCTATAGTTTTCCCCTTGATTTGAGACACAGCAATCAAATAAGAGGACAGAGCAAGTTTGGTTTGGGTTACAAATTGGCAAGTTCATATCAGCCACCAAAATACATCA-TAATTTGTCTATTTTGTC------AATTCCAGCAACCTGAAATGATCCCTGGAAAAGGTACACGCTCAATACAACTCAGATTCGCCACATACTGTGGATACAGCATCATGGGAggcataaaagca--aaaaaaatgttCCTGTGCTCAGGACCTCAAAGCCTAGTAAATGACTAACTAC-------AAAG--AAAAGCAGGGCCATAAGAACCTTA-GGGGCACTCCAACTAATTGATGggtataagtttaaaaaaatactaa-----tatatATACTCTGT-TGATGATTTGGGAAAATTTCCTAGGGTACAGTTCAAGATCAACTTAGATAAAAATCCTTAATTTTGGTTGTGAATTTTCACCTGTTCtt-ggaataatattttaaatatataaaataaaaaatatataattatagtgGAAA------CCAATTGTTTTGAGATAGTTACTA-AGCATCAAA------------AATGAAGTACACTTTTTTCCCATAATGTATTACATAAAAACTCTAGGTGCAAGTTTAATAACTTGTCATTTTGTAACAGTATTGAGTATCAATGACATTTCAAGGATGTGGGAGCTATAATGTcttatttctgtgctttttatttGTGACAAAATCACCTGTATTTCTAGGGTTTCTACAGTTCATTGCCTATATTCTTAATAGAAGGAAATGCTACATTTCCATTAGAAGTTAGTGAAAATGAAAATCCA---TTTTTCTCCCACTCAACTTCACAA--TACCCTTAATTTTATCTCTGAGCCCTTTGGG----------AATCTGTGAAGTACAGGTTAAGAAC

a score=38429
s chr3           142970335 1053 + 160039680 TTAATGTTTCAAACTCCCACTTATCAGCGCCCCCCCACCCCACCCCCATTTCTTTTCATCCTTTTGATAAATTCAAACGAAGCTGCTGGAGTTGATCAGACAAAACAGTCCCAGG----CTTTGTCTGGAAGTCATGGTCGCCTTTCTTCCTTTTGCCGCTGCTCCAACTTTCATGCTCCTGCTCCGTTCACTTGCTTC-TATTGGTAATAAAATGTACTGTGAGACAGATTACCAAATGTATCACCTTGACACCTCGGTGAGCAAAGACTCAGATCGGGATAATAGACTTAACTGAAATGTCTTCCTGCGGGTGTCTGTTATTAACCAAACAATTGCTATCCCAGAAAACAACTGGTAGGTACAGGCCCTTTAGACGAAGTACAGACAGGCCCGTAAGA-ATGTGGGCCGAGGAAGGC-CTCTCCTGAGAGATTCATTAGATTTTGATTAGCCTCCAATCCATTTGTTCTGAGCAACACAGAGGCTTTCTCCCCCTGGCCAGGATGAGATT-CCAGCTGTGACAGAGATGGACATTTAATTTGTTTGTGATTGGGTTGTTAACACTGGACATTTGTCATCTGACATTTCTTCTTTGT--TCCTTATCTCCAAATTTACTTCCAGCAAGGATGATTTTAAGAATAACTTAGGTTAAAAATTGATTGT---GAGTGTGTACTCTGTGGGCTTCTACTTTATTTTACTTCACAAGAATAATAATTCTGGGATCCAGCGACTAAAATTTCCAATGCTGTATGGGCAAA---------Gctcacaaaacacccaagcatccacatcccg-tttctcagagaagatttaatggcaggcctgctcactgaggctcat----------acaagttcattactgttataaaacagtatataggaattctaccagtgtccaacagactgctattaatgg-ttttcaagtacacatacctatcaaagaatgaaaggcagtctgt-ctatgtttgccttgctttttctgtgtctatggctttttctttcccatgataatttcctgaatttaaatattgagcccccgaaaaatctcctcatcatttgtacTTGTTCCCCA
s HiC_scaffold_1 129158998 1040 + 233722169 tcagtgagccAAACTCACTTTTGTCaag--------atctcttttttttcctttttcatctttttggaaaatgcagaagaaactaGCAGAGCTGATCAGATAAAATAATTACAAGTAGTCGCCATGTAGAAATCAAAATTACCTCTTTTCCCTTTATC-CCGCTT-AACTTTCC--CTTCTGGCCTTTTCACTCCCTACATGTCAACAGTCAAATACACTGTGAAACAGGTCAGCAAATGTATCACTTTGACACTTAGGTGAGTGGA-----AGATTTGGAAAACAGACTTTGCTGGAATGCTTTCCTG-GTGTGTCCAGTTTTG-TTATGTAGCTGCAATCCCAGAAAACAACTGGCTGGTGCCTCCCCTT--AACTCAGTAC------TCTTCTAATAGATGTGA-CTAAGGAAGCTGCTTTCGTGAGGGATTCATTAGATTTTGATTAGCTTCCAACACATTTGTTCTGAACAAC-CAGTGCATTTC--CCCCAGGCCAGGCCAAGGTTGCCTGCTGTGACAGAGATGGACATTTAATTTGTTTGTGATTGGGTTGTCAAGGCTGGGCATTTGTCATCTgagatttcttctttttactcCTCTTCCCCAAATCTACTTCTAAAAAgggaaatcttaaaaataaggTAGATTAAAAAATGGTGGTATGGCATGTGTACTAGATtggcttctattttattttgcttagtga-AATCATAATTTTGGGG-CTGGTGATTAAAATTTCTAACTATGTACAGGCAAACTTTACATTGCTCACAGAACACCCCAACAATCTCATTCCATTTTTTTAGGGAACATTTAATAGCAGGCCTCTTCAGTGAGGTTCATTACCTCTCTCACAGGTTCATTACCTTTAGAAAACAGTTGACAGGAATTTTGCTAGTATCCAAAGTAGTGTTACTAATGATTTTTCAACTGCATATAtctacaaaagaacaaaagacaacCTGTCCTATGTAAACCTtgactttt---------tggtctttttgtttccttgataattt-ttaaatgcaaatattta-----cattgactcttttaatcatttgtaTTAGTTAGCCA

a score=126893
s chr3           142974475 3155 + 160039680 TTTAGTGTTAGCCTTAGTCTTTAAGAAGGTGAGAGACTGACCAAACATGGAGAAAAATGAAA-AAATTGAGCATGTATCCTAAAGGACAATGTGCATACATACTGAAACAAACATCCATGGGTGCTACTGTGAGGCT-TTGTGCATTCTGGCTTT-CGGGCAATTTCTGCTCATGATGTGGCAGAGAGAATGTTTTAGCTGGAGAAGGAAGGCTAG--TTCTGACTTTGTTTCTAAGAACCTGAGTGACCCAATA--AGTCATTTCCTTTTTTTTTTTTTTTTTGAAAACCTAGGTTGCATGTTTATCAATGA---AATTT--CTGGATAATTTGCCAGTTTTTTTTTCCAGTACTTAAAAAAAAAATCCTATGACTCTCATAAAGGATGCCTTTTTTTTTTTTTTTGATTTTGATGTTTCATTTGGCACCCGATTCCGTACAGATGTCTTAACTCAGGGTATTGTAGTTCTTAGAGATTTAATACATGGGATTTATCACTCTGCTAATGTCCCTTGGAGTGAAATGCTTGTCTGTGTATCCACCCACCCTCACATTCATAATATATATTAGATCTTTTTAATGTCCATCATGAGAAGTGCCAGCAGACCTCAATGAAATATTACTTATTGCTGCATCCATCTTCACCAACTCCATCAGGCTGGATGAAGTTAATAAGGAACGACG---------------GCATTTGCCATTTTCTCAGGCATCTGTGCGTCGCAGAAACACACAGATCGAACCTGCTTCAGGTTTTCTTCACCTGGAGTCAGAAAAGTTTCTAACTTGAAAATAAATTGAAAATCCAACAGACAATTTGATTCTGAAATGCGAGGCTGGG-TGTTGAAGCCTCACC-ATTGTCTCTGGTAGACAGCACAGCT-GGGCTTCCTTAGTCTCTTTTGTCCCATTCCTGGTGATTGAGCAGGTGAGCTGCGGTGGGTTGGCTCTGAGGAACACAGGTTACACGAGTTTGAATAACGGTGAGAAGGATGGACTTAGGATCAAGCAGGCTCTGGGGACTTCTGAGGATAGAAAAACCAGGCTTCTTTGATCTCCCACTCCATATATACTTCAGAACATTTCACTTTTCCCCCTTTTCTTTCTGTCCTTTTTTCCCCCTGCCAGCTGTCTGGACAG---CTCATCTTACTTCTCTATAAAGACACTACAATCTCTTTTGGAAGTCTCATTTTAGCTCCAATGTTTCTGGATTTAAATAGTAAATTCACACCCGAAAGGATTCTGCCTTG-ACATTTTTGCACATGAAGAATAGTGACCACAACG--------GGTAGGGGCTAGGGAATAGGACATGGGTGTCTAATCTGGGAAGCTGTACTTAAAAGTTTGTATTGGACACGTGCCTAGGACACAAGTTGCCATTTATAAAATGACTT-GGGGTTTTAGAGAGTTTTTTTTTTTTTTGTTTTGCTTTGCTTGGTAACACTCTGCCAAATTGCAAAATGACTTAAATAGGAAAAAGTGAGCAAATCATAAGTGTGTACAGATTTGTGAAAGCGTGCACGCATGCGGATGCCCACACGCTTGCACTCGCGTGcacacacacacacacacacacacatacacacacatacacacacacacacacacacacacacacacacacacacTGGACATTTTATTTAATTTAGAATGCCTTAAGCACTCTAT-AGCCCATTTA-TGACACTTTCTAGAATACAAATGCAGCGATTTATATTTCACTCTTCTCTTGTAACATGCTTAGAAGAATGCTTTATATTGTTAAATACAGAGACATTTGCTGTGAAAGTTTTCTAAAATAGTTTTAGTTTAAGAAGTAACATCTGAGTGCCAGAACACATGTCTAAATGTGTTTTGGTAACTGCAGGTGTACAGTCCTAATATTAGAGGAAACTCTAACCATGATCTATAGTCttttattttatatatttttaatCCAGGGTCATGGCAAGACACAGTGGGGAATCCTAATCATCTCTCTCATATCCTCACACTCAACCTCAAAGTCCATATTTGTGGTTTTGTGTGTAATGAGGTGATTTATCATGGTGTGTCAACCATAGAGAGTTCGGCATAAATGAATTTGGTTTCTTTTTTTAAAAAAGGTATTTGTATCTATACATACTTTTACAATAATCGGACATTGCCC-TTAATGGCGAACACACATTATTATGTGATTTGCATATGAAGGAACCCTGCATTACTCTTACTTGACTGACTGTCAGCTTCGGCCACTGCACCTGGTAGTCCCCAGgtcagccattgttcccatgatggggctcatttttcaagggttaataacatagaccttaacattcactttgggttgaaacttggcaGCCACTATGTGCACACCGCCTTAAAGAACTGATTTTAAACAAAAATGCTTTAAATTGATTTACCCTTTTCAAATCAGAGTACGCCAGAATAATAGTACCTTACGTCACTTCTAATGCTTTGCACTTACTTAATGTGCA------AAGCAGTTATTCCCAGGTGGTGGTTTGGAGGAGAGCACTGATGGTCCAAGTTAAAGAGAGATTGGTTTCCATTGAGAATTCTAAAAGGAATTTGCCAACTTTGACTCTCTTTC-------ATACCCTTGCTATTTTCA---AAGAACTGCTACAGGACTTCCCTTTAATAGAAGAGGACAT--------GTGTCTGCCATTTGAAAAGAAGCTTAAAGGTGC----TGGAATTTTGTGCTTAATTGCACAGCATCCAGATCTTGGGAAGGACTCCTTTTAGTTCAGCATCCTTTAGTGCTAGTTGAACTGGGTTAATCT-GTG-GGATAGAGTTACTCATGGTCTTTAGTGTTTGGGTTTTATTAGCTGCACAT-----AAAAAAGA------------AAGGCCAGTCTGT-GTTTCCCTATAGCACACAGTTTTGCTATCCC--------------ATTCAAATTTGCATTTCCATTTTGTATTCATTTG-TGAAAATATGAACCATTC-ATCCTCTTTTCTGAGTCAACAGAAGTTAGAACTCCACACTCATTCTTCT-TCTTTAAAATTACTTTGGCTGTCAGCATATCTGTATATTT-ATATACAGCTACATTCAAAAGAAGAAAGATGCCGCCGGGCTATTCCTATACTGAAGATCTCTTCTTGAGGAGAGATGAGCTGGACTAATGAGGACATAACCCTGTCAAATCCAAACTTTGATCAACTTTTCGCTGGGCACGATATAGACA-gagttcagag
s HiC_scaffold_1 129160869 3051 + 233722169 TTTGGTTCCAGCTACAGTCTTTAAGAAGAGAAGAGATTG--CACACATTAGCAGAAGTGCCATGAATTGCGAGCATATCCAAGAGAGCA-TCTATGGACATAGTGAAATGACCA--CTTGAGAGCAATCAGGGGGCCCTTCTGCATGTTTGCTTCATCAGTAGATACTGCTAATGATATGGTGGAGAGAATATTTCATCTGTGAAATACAGGTTCACATTGTGGCTTTTCTGCTAACTAGGTGCGTGACCCCATACAAgtc-----------ttttaatcttttaaaaactcatgTTAAATATCTATCAATGAGCAAGTTTTGCTAGAtgattt-caaagatttttttctagctCT------GAAACTCCTATGATTCTCATAAAGGAA--------TGTTTTATTTGATTGTGACATTTCATTTGACACCTAATTCTGTACAGATGTCTTAACTCAAAGTATTTTGGTTCTTGTAGATTTAATACATGGAATTTATCATTCTGTTAATGCACCTTGGAGTGAAATGCATGTCTGTGTATCCACCTACTCtcacatttattatatatattacatc-TTTTAATGTCCATCATGAGAAATGCCAATGGACCTAAATGAAATATTAC-TACTGTTACATTCATTTTTACCAATTCTGTTGGGCTAGAtgaattaaataagaaatgaCGTGTGCTACGGAAACTACATTTGCCATATACTCAGGTGTTTGTGCATTGCATAAACATGGATATTGAATACGCTTTGAGTTTTCTTTACCAAGGGTCAGAAAAGTTTCTAACttgaaaataaattggaaatcaaATGGACAATTTGATTTTGAAATGTGAGACTGAGCTATTGTAACAGTGCCTCTTGTCTCTGGCTGACAGCACAGCTGGGGACTCCTTAGCTTCTTTTATCCTATACCAGGTGATTGAGCAGGTGAGACTGGGTGACTGGGATGTGAGAGGCGCAGGTTATAAGATTATGAATAATGGTGGGAAGGATGAACTGAGGATCAAGAAGCCTGTGGGGACTTCAGAGGATAGAAAAGCCAGGGATCTTTGATCCCTGGCTTTGTGTATacttcagaacattttcattttcc----tttttctctgtcctttt---cttctgccAGCTGTCTGGACAACTTCTCATCTTGCTTCTCTGTGAAAATGCCATAATCTTTTTTGGAAATCTCATTTTAGCATGAATGTTTCTAGATATGAATAGTAAATTCACACCAGGAAGAATTCCTCCTTGAACATTTTTGCACAGGAAGATTAA-----AAAAGGATTTGGGAGGCAAGGGTTGGTGAACAGGACATGAATTTCCAACCTGGGAAGTGATACTTACAAGTTTTCATTGG--------CTAGG-----AGCTGTCA-TTGTTACGTGACTTCAAGATTTTAGGGtgcttttc---------ttttggtttgatttttaaatttttacaaaattaagaaattatttacATAGAAtaaagtgtaaatattttaaatgtat-------------agccCTCTCCTATGATGTTCCTC-----------------------------------------------------------------------------------CACACTCATTAAAT------TATGACTTAAGATATCCTCAACACCACAGAAGGCCACTTAGTGATACCTTTCAGGATACAAATATAtcagtttatattt---tctaatCTTTGGACATGTTTCAAAGAAGACTTAGAGTTTTTAAATTCACAGACATTGCCTTGAAAAATTTACTACAGTAGTTTTATTTCAAGAAGGAA-ATGTAAATACTACAAAACTTGTTTGGATAAATTTTG---------GGTGTGAAGTGCTAATGCTTAGGAAAACTATGACTGTGCTCTACAG-------------GTATCTTTGTTTGAGGGTCATTGCAAGACATAGT--AGAATTCTAGTAG----TCTTATATGATCACACTCATCCTCAATGGCCATATTTGTTACTGCCTGTGTAATGAGGTGATTTATCATGGTATGTCAACCATAGAGAGTTCAGTATAAATGAATTCAATTTC-----TTAAAAAAGGTATTTGTATCTAAAC--ACTTTTACAGGAATCTGACATTGCCCTTTAAAGGTAAGCACG---TATTATGTGATTTGCATATGAAGAAGCCATGTATTACTCTTACTTGACTGACTGTCTGCTTCAGCAGTTGCACCTGGTAGTGCCCAGGTCTGTCATTGTTTCCATGATAGAGCTCATTTTTCAAGGGTTAATAACATAGACCTTAACATTCACTTT-GGTTGAAACTTGGCAACCACTATGAGTATACAGCC-TAAAAAGctgattttaaacaaaaatggtTTAAATTGATTTACCCTTTTCAAATTAGAGTATGTCTGAATAATAGTACTTTGCATCAGTTCTAATGCTTTAAGtttatttaatgtaaaatttgCATGCTATTATCCCCAGCTAGTGATTTGGGAGATGCCAGCTTTGGGACAAATGGAATAAAGATTGGTTTCCACTGAGCATTCCAGAA-AAATTtgcaaattttgtctttttcttttaggtaATATCATTGCTGTTTTAAAGGAAGAAGTGTTATTACTCTCACCTTTAACAGAAGAGGGCAGTTGTGGTAGTGAATGCAATTTGAAAAAAAGGGCAAAAGTACAATGTTGGAAATTGTGTTTAGTTGTATAGCATACTGAATTGACAAAGAATTCCCGTCAGCTCAGCACCTCTGAGCGCTATTTGAATTGGGTTAAGCTGGTGTGTGTGTAGTTGCTCAGGGCCTTTAGCTTTTCAGTGCTATAAACTCCatattacaaaaaaaagaaaaaggaaaaagaaggcctATTTGTAGTCACAGTGTAGCATGTATTTTTGCTACTCTATGATTTGCTATAAATGCAAATGAGCATTTATATcctatatacatttatttaaaaaatgacctCTTCTGTCCTTTTTACTAAGTCAACAAAAGTTTTAACTtcacattcatttttctctttttaaaagtcacttgGATGTCAGCctatttgtatatttaatatacagtttcattttaaaga--aaaagtgctGCTGGGCTATTTCTACACTGAAGACATCTTTTCAATGAGAGGAGAGCTGGACTAATGAGGATATCATTCTGCCAGTTTTAAACTTTGATCAATTTTTGACCAAGAATGATATGGACAGGAATTCTGAG

a score=92995
s chr3           142978477 2579 + 160039680 CTCAGTGAGGAGGGTAGGCAGGGG--------------------------TGAGCCTCTGTGAA-TACTAGAGGTTGCTTACTGCCTGT-AATCCCAGCAGCAGGAGAGGATCCCCATTGGAAGTAGATACA----TTGTCAAAGCCACAGAGAAGGGACAGGCAGAAACCAGGAATAGGTAGGTTGTATGATTTTTATTT------------------------CAATGCTCAGCTGCTTATAATTAAGCTTGTGTCTTAAGCCAC--TTCACTTTTTCATGTATG------TGTGTGTGCATATCCCACTTTCTTTTTAGGGCTTATTCCAAAGGCAACTTGGAGGTGAGAGTCCTCATGAAGGCCCCACAC-AATATAGTGATACTGGGACTGGATACCATAGTGTTACTCTAAACCCTAATGCATCATCAGTTTG-TTATACAACTCATGCCATAGTCTATTCCCAAGCACATATATTTTGTTTTTATCTAAAGCAAATTC-------------CACTTCAAGGGATGCATTATTTTGTTTTTGGAGTATTTTCGGTCACCCAAGAACAAAAGTCACTT-----GCTGTGA-CACTCGTTTCCCGACAGAAAATACATT------------CAAGCAAGAACATTCAAAGTGAGTGGGTTTGCAGCACTCCGCACTTGGAATCAACCGGTGTGCTGCCTGTCCTATGGTCAGCATCTGTATTAACTTCCAGAGACAGAGAGGTCATTTTTCAGAAAATAAAAGCTTATC--AGCTTCTGCATCTCCAGCTCCAGTGGAAGGCCAAAATGGGTTCAGGCTTGACACC-CTAGCAGAAATCTTTTAGTGTATAAATGGAGCTCTTGGATTCTCCGTCAGCTCCCCCACCTTCTAGCTTGACCTGGGAGGAACTGTCAAAACGGCTGTGGAGGAGTTGCA----AGGCTGCAACGGCTCTTTTAGCAGCAGAGAATAGAAAGATCTCAAA-GTGAAGCCTATTGTCAGGAGACTCGCTTTGCCCTGGCTCTCTTCCAGGAGTGAGGGAGTTTAGATTCAGCCTGAGTTGAGTAGCATTTAATCTCT-AAAGTGGAGACAGGAACCAAATTGTTAACCTTATGAAGTTTAACCAGAAGAAAAAAAGCAATGGTAGTG---------AGTTAAAAAAAATGTTAGCTAAGAATGTCTGAT--TCATGACAATCATAATGATACATA------TTCTCAGATTTCCTGCATTTAGAACACCTTTTAAAATTTTTTTGTCTGTAGAATATCATTTAGATTTTTTATGTATGGCTGTCTGGAGATAGAGTTCTGATCTGTTT----------TATTATGAACATTTTGCAGATGCCCGCATCACTTTTATATATTTATTTGATTTGATTTGAAACTGTTTACAAATAGTTTCCCCTCTAGATTTCTGTTGGCATGAGACTTATCTCTACTAGTCTTACAAATGGGGTGACCAAAGCATATTGGTGATC------------------TATCGCACAAAGAGTAACTCAGAACAGATGAGTGGCT-GTCATATAAACATTT--ATGAGCTAGTGCAATGACTGTCCTCATTTGAAAGCAACCAGTATCAACTTGGCCCATGCCACAGTGGGTGTGAAAATTGCAAGGTAAAATAAAACAGATGAGACCATTTAAGTTTGAAATGGAAGAACAGATCACCGGCAACAGCTATTTACTTTCACAGTCACTAAAATAGGGTGTTTTGTTGTGAAAACTATCAATACAGGGTGATGGATACCCCGCTTAAAGTGCCAATATGATGCCATTCTGAACTGCAAAACGATTTCATTACAAGTGTATGGGGAACCCTTAAACATGACATTACGATGAGACTATAATGTAAGATAACAATGGAAAAACAATTTCAGGGTAAGTATAAGGAGACTATAACCATGCAGCTAGAAGGCCACTGGAATGTGAGATTATAATAGCTCAACATTAAAACACCGAGAAAGACGTGGTCAATGGTATTCCTTTTTCTTAAACTGAGAAATAATCTAGACACCATTTCTGCTCATGAATAGTAAAGTTGTAGACT--GTGTTGAGAAAGGATGCAGTTCATCTCCAGCATATCCAGTTCTTATTCCCATTCTGCGGCACACT-CTGTCCCTTTTCCATTTCCTGGGGTGGTGTTGGAGACAGTTTTTATCTGACCTTATCATTTTCTTTCAACTACACTGCTTTTGAGACTTGGCTACAAGTTCTAAACC-CCTTCTCCCACCTAAGCCCCGTGATATGGACTCATTAGCCACATATGGGGTCGAATTGAGGATCAGCTAGGAACAGCTGTCTGATGTTCTTTGTACCTCTTAAATCCCCAGTTGTTACTGGACTTTAGTGGAAATCTCAGTATTAGAAATTTGTTTCCTTGAGTCTAGAAGGAGCTTTCAGTTTCAAGAATACTTAGAAAATGAAACTTGAATACGAACATAAATTAATAACAAACTATTTACCTGTTAAAAGGGTGGTACATTAAACCCCAATCATCTAAGAATATCACCTTTAGACAGCCCTGAGTTCATCAGCTATTTCATCTACTTGCTTGTGGGTAAAC-----CGGGCATATCCTTCCT-------------------ATCACCTTTAACATGAGGTCACGAACA-----------------------------GAAATGAGTTCTTAAGGTTAATTGC----CACAGGGTCTAGGCCATGGGAGCAGTTGATAATTATCTTCTCTTTATAGACATAAAGA
s HiC_scaffold_1 129166867 2666 + 233722169 CCCAGTGAAGGGGGCAGGGAGGGCAATGTCAACCTTCATGAATGAGAGGCTGAGCCTCTGAAAACTAGAGGAGGTCGGGGATTATCAGTTACTTCTATGGGCTGGAGAGAGCACTGCTTATAAGCAGATTAAATGCTTATTAGAGCTACAACGCAGAGAAattcagagacaagaaatgtATAG------TGATACCCTTCTGCCAGCCCTCCTCACCCTCCAACATAGTTTTCAGATACCTGAAAttaattttgtatcttaaatCACACTGAAATTTTTCATGTGTGGTCATTCAAATATgcatttttatcttcaaatttaagatttatttcaAACATAATAATGAAATGAGAGCC---ATGAGAGCTTCACACCAAGGTAGTAGTGTTTGAACTGGGCACTGTGGGGTGACTCTTAACCCTATCTCATACTTGATTTGGTTTTTCAACTCATGCCATGTTCTCTTGTGGAGATCAAATAattggtttttaaataaaatgaattcaaatttgTGGGGGCATTTAAAGGAATTTATTATCT-GTTCTTGGGGTAt---------cccaagaacaaaaatcattgCTGAAGCTGCGAACACCTATTCCCTGACAGAAA-TACATTTAAACATCAGATCAAGCACAAACACCTCACCCAAGCAGATCTGTGGTATTTAACACTTGGACCCAGCTGATCTGTTGGTTGCCTCAGCCTCATTATCTGTGTTAAGTTCTAAAGACAGCGAAGTAGTTTTATATAAATTGAAGGCTTAGCCGAACCATTGCTTC-CCAGCTCCAATTGAATGC-AAAATTTCTTCAAGTTTGAAAACGTTAGCAGAAAtcttttattgtaaaaaattTTCACTGTTATACTCTTTATGCTCCTCTAACTTCTAGTTTGACCTACGAAGAGCTGTCAAGACAGCGGTAGAGGAGTTGTGTCAGAGGCAGTAATGGCTCTTTTAACAGCAGAGaatagaaaaatctcaaaagtGAGGCCTATTGTCAGGGGACTCACACTGCCCTGGCTGACTTCCAAGACTGAGTTAGTTTGTATTAGACTGGAGTTgtgtaacatttaattttttgaaagggAGTTTCGAACCAAACTGTTACCTGTTCCAAATTTAACCA--------CCAACAATcgtggtgtttttttttaattaaataaaatgcttg------------GATCTTTATAATAATCAATACAACACACAGTGTTTTCCTTAAATCTCTTACTTTTCA---------TGAAATTTGACT-----TAAAAcaccatttaaaattttcatatgcaACCATTTGGAGATGGAGTTTTA---TGTTTGCTATTACCGTGTTATGAATTTTTAG----TGCACATATCACTTTTCGatatccatttcttttgatttagAA-----------------------------------------ACACTTATCCACATTAGTCTTACAAATGGAGTGGCCAAAGTATATTGGTTATCAGACCATATGGAATTATCTATTCTACAAAGgccaaagcaaaacagataagTGGCTTgtcatataaacatttttatgagCCAGTGGAATGACAGTCCTCATTTGAAAGCAACCGGTATAAATTTGGCCCATACCACAATGGGTGTGAAAATTGcaaggtaaaataaaacagatgagaCCATTTAAGtttgaaatggaagaacagatcACTGGCAACAGCTATTTACTTTCACAGACACTAAAATAGGGTGTTTTGTTGTGAAAACTATCAATACAGGGTGATGGATACCCTGCTTAAAGTGCCAATATGATGCCATTCTGTACTGGAAAACGATTTCATTACAAGTGTAGGGGGAACCTTTAAACATGACATTATGATGTGACTGTAATGTAAGATaacaatagaaaaacaatttCAGAGTAAGTGTACAGAGACTATATCCATGCAGTTAGGAGACCACTGGAATGTGAGATTATAATAGCTTTGTATTAAAATGGTGAAAAAGATATGctcaat----tacttttttaaaaaactga-aaataacctAGGCAACATTTATGCTCATGAATAATAAAGTCCTAGGTTACATTTTAGGGAGGAGGATAGCTGAGCACCAGCATATCCAGTTCTTATTCCTATTCTGGTATGTGTTCCCAATCTTTTCCCATTTCCTGAGGTTAAGTTGGAGACAGTTTTTGTCTGACCTTATCATTCTCCTTCAACCATACCAC-TTTGAGGCTCAGCTTCAAGTTCTAAACTACTTTCTTCCATCT-AGCCCTGTGACTTGGCCACATTAACCACCTATGGGATATAATTTGAGTTCAACTAGGG---------TGATTTTCT---CACCTCCAGGTGCTTCTGTTATCACTGCACCTCAGCAGAAATCTCACCATTAGAAATGTAGCTTCTTAAATCTAAaaagatttttca-tttcatgagcATTTAATAACTTAAAATTGAACActtacac--atttataa-aatctaaGTACAAGCTGGAGGGGTAATTTATAAAACTTGAACACCTCAAGAACTTTGTCATCACACACATTGGAGTTGATATGCCTTTTCTTCAACTTAGCTCTTAGTGAATATGGGAAGGCCCATCCTTACTTTATATAAGTCTTAATTTCCTTATCTTCAAAATTAGTCCAATGGCAATATATAATTCTGGATGTAGTTGTAATAGAAAACACGTTTGTAATGTAATGTGCCTTGCACAATGTCTGGCCAACTTGAGGACttgataa-tattttttcattacagACACAAGAA

a score=26681
s chr3           142981227 905 + 160039680 AAGGTTTCTCCCCAACC---------TCAGGCTTTCTTCTGATCCACTCCAATTCAGTCT-AATGAGACAGTTACT--GTCTCGAGCCCCTAAGGTAGGCTTGCTCAAGCCTATTTATCCGCTGCTGCT-ACCATTCTCTACCCTCAGGCTATTGTGTTTGCTCATACTCATTGGCTC--------ACTTTGTAT-----TGAGTACTGTGGCCTCAG-----------------TGATC------ATCTGGTCCTGGGCCTCTTGACTCTAAGCTTCTAGCCTGCATGTTGAAACCTTAAATAATCTC---TTGGATTAGACATTGACTGCTGCTCTGTTTCCTAACTGCGGAGGTT-ACACAACAGCATGCAAACATAAGTGTTGTCAAAGCTCTAATCCAGTTTTAAATCTATCCATCTATGCCATATTTAAAGGACCAATCCACTGAGATCAAATGCAATTCTGTGAATATAGAATAATAGGTTGTCTCCCTAGATACTGTCTTCTGGTAAGGGTCCCGATTTTAACTATGGTTAAAAT------CCAAAGCCCTAATAGCATCCATCACAAAACATTCCCATGAAGGGGTTACTTGGCTGTTAAGAATACATTCTTGTATCACTCAGGTTTAATGGCCCCATTCACTATCCTGTGGGATAATTTCCTTAAAAGTCCATCCACAGAGATGAATCAGCAGGGG------CCA-------TGAACTCCT-TGGAGCAGGATCTATGGTGAACATACTTTCTG---CTAGCTTTTAGCAGTGCCAAGAATTGAAGTTGATGCACAAATTATTTGGGGAATGGATTTTAATGTAGACAACAAACCCGTCCAAAGCACTTAAGGCAGTGTGATCTGAGAATGTATGGGATTCAGGGCTGCAGTGTGATTTCTGGGCACACAGTCTACAATGAGCATCAACTGTGTAGCAGACGACATGGCAAGGAGCATTAAAGACCCATTA
s HiC_scaffold_1 129170123 940 + 233722169 AGGGTTTTTCCCTAACCCTTGtctacttaaaatttatttttgagcacTCCAATTCAATTTTAATTAGAGAGTTTCTTAATCTTGATGATCTAAGGCATGCTTG---------AGTTTTCCATCTCTCCTTGCCAACCTGCATCTTTGGGTCATTATATTTGTCCTTAGTTGCTGACTCCATACTGCGCTTTCTATGGGAGTGGGCATTCTGTCCTTGGAAGATGACTTGTAGCCATAGTCTAAGCTGTCTGTCACTGGATCTCTTTCCTCTAAGCTTCTAGTTTGCT-------GCCTTAAATAATCTCATTTTGAATCA--CAACCAGGGCTGTC--ATTTCCTAATAGCTGAGgtttatataaaagtatataaacaGGGATTTTGTTACACCTTTGATCCAGTTTTAAATCTATTCATTTGTGTCATGCTTGAAGGACCAACTCACTAACATAAAACACAGTTTTGTGAGCacagaataaaatgttttctcccCAGATAGT-TCTTCTGATAAGGTTCCTGATTTGAACTGTGGTGTCAGTGTTTACCTAAAGCCCTGATGGGATT----GCAAAGCATTCTCTTGAAGGAATTACTTAGCTGT-AAAAATGTGTTCTTGTAGAACTCAAGTTTAATGGCCTCACTCACCATACCATTGGATAATTTCCTTTTAAGTCCTTCCACAGGGATGAGTCACCAAACGAATAACTCACTAAATTTGAACTCCTACAGATGAAGGCTCATTTTGAATATACTTTCTAGTCTTAGCTCCTATTAGAATCAAACATT-----------ATAAATGGTTTTTGGAGTAAA-ATTACTGTGTACTACAAAACAGACCAAATTATTCCAGGCAGCATGATCTGGGAAGAATTGAAGTATAATCCTGCAATGTGACTACTCTGCATTTAGCCTACTCTGAGCACCGGCCATATAAGAAATG---TGAAAATGAGAATTAAAGATCTACTA

a score=88284
s chr3           142995779 2100 + 160039680 GATTCTAAAGTATAGTTCTTGACAACAG-CCATCTGCCAGCTGAGTGTTTCTTGAAAACACAAAGCCTTCCGACTTCTCTAGAGTCATGTTTCCCACCTTTTAGCCTTTTATTTTATTCAGAAGAAAATGTGAAAGAAGTAGAGATTGTTTTTGAATAT-GGATTTTCTGAGTATTGGCCACATTTAAATTATAATAAAATCCGCTGAAAAGATGACACAAATTTGGTTATTCAAAA-ATAGTCTTTTGAGGCCATCAGGAAAATTAGCTGAAATTAGCTGACTGCAGGAaaaagaagagaaaacaaaggaagagggggaaagagaaacagagaaaaagaaagaaaaagaaaaTGGAAAACTTGTTACATTCCCCACCAGAGGGAGACAATTTTTT-CCATTTGCCTTTCAAAACCCTAAATTCCATTTGAGGCAGATTTGAAGAGGCCAACCCACGGTTTACAGGGGTTGATTAATACCCAGAGGGAGAA-AACAAACTTACAAATCTAATTTGTTTACTTTTGCCTTTTAATATCACATTATTTTTTGAGAACTGAGTTCTGCTCTGCCAGCAGGGCTGATGCTGTTTG----GCATGGAACCTGAAGGGTTACTTGTT-TTTTGCTGTCGACTTTATCTCTAATTATGTTAGTATGGATTCAGATAGGACACTGATAATATAACAACATGGAATAACTTAGCATTAATTATTTCCTGTAGTAAGACATTTGCAAATCAGCCCTAAACTAACAGAGACAAGGGGCATGATGCTGGTAGAGAAAGGGGAAGCGGTAGCAATGTGTTTCC--------------TTGATGTTGG--------------------------AATAAATGACAGTTCTTTAAAAAAATTAAAA-----TTGGTTTACAGTAGTTATTAATTTAGG-AAAATTGACACATAGACCAA--GGTTCTTTCCTATGGTGTGTCTGTGCTCAGGATAAGTAAACATTTTATCAAAACTACAGAAAGTTATATA-------ATAAGGTAAGACCTATTGTAGTTTTAAGGCATCCAATATCATGTCCAATTTAATA-ATG-AGTGTTAGGTCCACATGTCCGGCGTAATTACCTGTACATTTCCTTCTCCCCAGTGGCTCCTTATGGAAACCAGTTCAAATCTGACCTTGTGGAAATGA-CTAAAAATTACTCCAAATAATTGTACAAATTTAATTAGTACGTGGCCAAATC---TCAGCTCAGACCAGGTGACTGGAAGTGCTGCTTAAACAGCCATAAGGCTCACTACAATTTCTGTTTCCTTATGTTCCTCATGTCCAGAGTATGTCCAACTGAATGACATATGCAGTAACGCCCAG-ATGGTAGGTTTGAATGTGGGCTAATGTGGCAGAGCCAGGTAGAGCATTTGTCAAG-TTAGGAGCAGAG------CATCCTGACCCTGGGAGGGTAGATGGATGCTGTGAGAAACCATGGATGAT-ACTTAACTTTCACTCGCCCGAGGTGT-CGTTTAATCAGCAAGCACTCTTCATAATTTCGCTTTCCTATTTGTCAAGATCTCAATATTTTTTCAATATGAGGCCTGCTCCAGTGTACTTTACATGACACTTTATAATTAGTGGTACTTGAGAATTTGTCAGTTTTAAAAATTCATACAACATTCTTAGTTACAATTTATAAATGATTTTAAAGTATAATTAACATTCATCTTTACAAGTTATATGCAAACAAATATGCAAATTTCAAAATAAATATGCAAACATATAAAATGTTTTTGAATTAAGTAGTCCTTAACATTTTTAATGAAATCAATATTTTATTCATATTTTGCACACAATTTTGAGCACTTGCTGATTTGGGGGGGTTCCTCCGCATATAGGCGTTTGCATATTACATCCTGTAACTACCAGCAACAGGAGGCAAATGAGAATGAGGTCCCTGTCTTGAGGAAAGCT--AAGGGGTGATTCCACAGAGAAACATGATAGGTGCCGTCAGGTGGATTGGGGATTCAATTAAAATGGCTTTTGTGCTTCTTTAACTCTTAAACTTACTTCTTCAAGACCAGACACCAGGGAGGTAGGTAAAGCTAAAACGGCAAGG--------AAACAACCCTTAACCTC-TGTGCTGATAACAAATAGAGTCCAAGAAGTGCAATTCATGGTTATGaatttttaaa
s HiC_scaffold_1 129180129 2095 + 233722169 GATTCTTAAGTGAACCTTTGTAAAATAATCCATTTAGCAGTTGATTATTATACACATATGCAAAGCTTTCCTAATTCTT--GATGCaggttttatattttcc------ttcttttgttcataaaaaa--gtgaaagaagtaaagatt---tttgaatcTTGAATTTTCTGCA----AGGCACTTTCAgaagttaataaaaattttttaaaaaatgat-taaatgtgGTAATCTAAAGTGTACTCTTTTTGAGC-ATCATGAAACTTAGGTGAAATT----GACTTCAGGGtgacaaatagaaaa---------------------------agaaaaagaaaagaa---------------ttgttaTATTCCCCACCAGAGGgagacaatttttttccttttgcttttcaaaacC-TAAATTCTGATTAACACAGATTTGAAGAGTACAATACATGGTGTACTAGGACTGATTAATACCCAGGGGAAAAACAACAAACTTACAA-TCtaatttgtttacttttatcttttaatttcaaattattttcag-gaTCTAAGTTTTGTTCTGCCAGCACAGTAAATGCTACTTAACATGCATGGAACTTTAGTAGTTACTTGTTATTTCAGTGTCAACTTTATCTCTAATTATATTAGCATGAATTCAGATAGGACACTGATAATATGACAGCATGGAATAATTTCACATTAATTGTTTCCTGTAGTACGATATTTGCAAATCAACCCTAAGCTAATAGAGACAAGGGGCGTAGTGGTGGT----GATGGAGAA--GGCAACAATGTCTTTCCCATTGGCAAGAACGTAGATATTGGAATCAGCTGAAAGCCAGCCAATTTCCAATAAGCTGcaagtctttaaaaaattaaaaaagattctGGCTTACAGTAGCTACTAATTTAGGAAAAAGTGATATGT-GAgcagtcattttttttctatggCATATCTGTGCTTAAGA----TAaacattttatcaaaaatttagaaaactgtCTAGAGATTCATAGTATAAGACCTGCTGCACTTTTTAAAAGTCCAATTTCATGCCCAATTTAATAGATACAGTGTTAGATCTACATGTCCAGTGCAATTACTTGGACATTTCATTCTTCTTAACAGTTCTTTTTGGAAACTAGTTCAGATCTGACTTTgtataaatgctttttaaattagtCTGAATCATTTTACAAATCCAATTAGTGCACAGTGAAATCTTTTCAGCTTACTTCATTTGACACAGGGTACTGCTGAAGTGAGCTTACTGCTTGTAGTGGTTCCTATTTACTTC--TTTGTCATTTCCAAAATATATGTAAC----TAATGTACAGAATAAGTCTCAGAATCTCATATTTAAATGTGGGATAATGCAGAGACATCAGGTAAAGGATTTGTCTGGTTTAGGAGCGTGGGCTTCTCATCATCATTCAGTAAAGGTAAATGGATGGTTTGGAAAAACACAGAGTATCACTTAACTTTCACTTGCCTGAGGAATCCATTTAATCAGCAAGCACACTtaataattttgcttttctgtttgtcAAGATCTCAATATTTTTTCAATATAAGGTCTGCTCCAGTGTACTTTACATGGCACTTTATAATTAGTGGTACTTGAGAATTtggcagttttaaaaattcatacaacATTCTTAGTTAcaatttataaatgattttaaagtataattaaCATTCATCTTTACAAGTTATATGCAAACAAATAtgcaaatttagaaataaatatgcaaacatataaaatgtttttgagtTAAGTAGTccttaacatttttaatgaaatcaatattttattcatattttgcaCACAATTTTGAGTACTTACGGA--TGGGGGGGGTCTACTGCATGTAGGTTTTTGCTTATTGCAACTTCTAACTCCCACCAACAGAAGGGA------AACGAGTTTCTTCTTTTGATGCAGGCTGAAAAAAATGCTTTAGCAGACTAATCTAATAGGTGCTGT-AATTAGATT--TGACTTAATTAGTatagttttt-tgctttttgaactCTTATACTTACTTCTCTGTAACACAAAACCCATTTGGATCTCAGGACTAAAAGGTTGAGGGCATGAAAAAAATACCCTCAACTTCTTAAGCTGATAGCTAATATGGGCTAATACATTGGCTTGGTAGTTATGAAATTTTTAA

a score=59610
s chr3           143000168 1413 + 160039680 TTTTACCAGGGGATGAAATCTTCACAAT----TCATCCACTTTCCCC-ATTTGAGCTTATAAAAACGCAGGGGAAGGTTTTGATATAATTTTCTTCTCATTTATTGCTTGATTTTTTTCTTTTATTTTTGGGTGAACATGTTATTATCTTGTAGTTTGTTTT-GACAGTCAGCCACTTTCAATCTTTTTGAAAGAAACCAATAAGTACCTATACTCCTTTCTATAAACTTTATGATGCCTAGAATAGGCCCAGTACCCTAGGGAGGCATAGAATAGATGAACTTTCATTGCATGGAGAACACAGAGCTTGATTCTGTGGAGGAGGTCTCAT--GGAAAGTGCAAAATGACCCATGTATGAGTGAGTGAATGAACAAATGCATTCAGAGGGAACTCAGAACTCAAGGAAGACCATGATGGGACATGATTTATCAAGGACAGCACTAGGATGAAGATGAATCCTGTCTAATGTCTTGCAAAAGGCACAGAAGGATGATTGCAAGAGGTAAAAATGACTTGGAAGGAAATAAAGATTT------AAGAATTTAAAATAACACAAGCCATGGTGTAATAATATTTGGCTCCTCTTTTTTGATCGGTTTTCTTGTGTGCAAGATTTGCTTGTGTGCAAGATTTCAGGGAACAAGAATTCTTTTTTTTTCGGTGGGGGAAGAAAAGGATTAAAAAATTATTAAAGGACATACATTTGTGTAGCTGTTCACAGTTTATGAGAGGGTCTTTTGAGGTTATTTG---------ATGATCTAGCTAAGTACATTTAT-TCAAATTCAAAATAAGAAA---ATAGGATCTGATTATTTGAACTTGCTGATTTAGGGAGAAATAATTCATTTAGATGCACCACAAATTAATCTTCTTTCTAAGAATCAGAATAAACAATTGAAATTCCATTTTGCAGTGAGCTGTTTAGTAATGTCTGTGGGGACCCA-TTTGTTTATTTGCCTCTGTATGATAGTCTTAGGTAAACAGCACACAGCCATATCTATGTGTGTCTGGGTAGCCTTCCACGTTTTTATTATGCAACTTAGAAATGAAAGGGCTAAATCTGCAGTACTTAGCAGAACGGTGAAATCA-CACACAGTGTAAAACACTCCCCCACCTTCTT---GCCAAGGAGCCTTGGCCTTTGAAGACCATCCCTGAACAATCAGTCCCTTCTGTATGCCTTTCATTCTTACCGTATTCCAGGCTCCCC-----CCTTCAATGTTTTGTTTCTCTGGGCTAAATTTCATCTCAGTTGATTGCCCAATTCACTTTTCATTCAGTCATAATTGTTTTTTGAATTGTCTTAAATTCTCCAATGGATTATGACAATTTGAAAATTAACAATGGTGCCTTAATTGCATGGGGCCTTGCGATCCACAAAACCCTGTTGGTGGATGGTTCCCACCTCCCCTCTATCCACCTGTAATTTTTTT
s HiC_scaffold_1 129182778 1358 + 233722169 TTTTACTA----AAGAAAGCTTTATGATCTGCTTAATAACTCTCTCTTCTTTTAATTGCTAGAAACTCAGTGGAAATTTTTagtgtgagttttttctt-ttggtcacCTGATAATTACATTTT------GCGTGACTGTGTTACTGATGTGTAGCAGGTTTTTGATAGTTAGTTGctttaaatctttttgaaagaaacaaataagtACATACACTTCTTTCTATAAACTTTATGGTGCCTTGCCTGGGTTCAGGATCCAAAGGAGGCGTAGAGTAAACGCACTCTGATTGTGTGGAGAACACTGGACTTG----TGTACAG-AGGTCTCATAGGGCAGGTGCACAATGATGCATgtgtgagtgagtgaatgaat-------------------tcAGATTAGGAGAAAGATCACCATTCGGTGTGATTTGTCAAGAA-AGCATCAAAATGCAGGTGAGTCTTGGCCGATGCCTTTAGAAAGGCGTAGAATGATGATTGGAAGAGGAGGAAATGGCTTGGAGGGGAATAAAGGTTTGGcaagaagaatttaaaatgagaGGAGCCATAGTATAATAATATTAGACTCCTTTGTTTTGGCCTATTTGCTTGTGTGGAATAT------------AAGGTTTCAGacagcagaaatt-----------------------------ttaaaaagtcgtTTAGG---ACACATTAATGTCACCTTCCCCAGAGTACAATGAGGTGCTTTGAGGTCGTTTGGTGATGAAGATGATGCAGCTACTTATGCATATGttaaattcaaaacataaaagaTACAGAATGCGACTATTTGAGCTTGCTGATTTA---AGATAAAATTCATTTAGCTGCATCACAAATTAACCTTCCTTCACAGAACCAGAATAAGCAATTGAAATTCTGCTTTGCAGCACGCTGCTCCATAATGTCTGTAGAGACTGGCTTTGTTTATTGGCTGCTTTCTGATAGTCTTAGGTAAACAACGTGCAGCAATATCTACGTGCATTTGGATAAGCTTCAACATTTTTATGAtgcaacttaaaaattaaaaagccgaATCTGCCACAATTTGAAGAACAGCTAGATTTTCATCCACTGTGAAACAAACCCCTACCTCCTTCTCTTCAAGTAACCTTGCCCTTTAAAGACGGTTGCTGCACAATCAGTCAGCTCCAtatgtctttcattctttctatagtctgggtttttttttttccttccatgtttTGTTTCTCTGGACTGAATTGCATCTCACTTGATTGCCCAATTCACTTTTCATTCAGTCATAATTGTTTTTTGAATTGTCTTAAATTCTCAAATGGATTATGACAatttgaaaattaacaatggcgCCTTAATTGCATGGGGCTGTGTGATCCCCAAAACCCTGTTGGCTTACGTTACCCCCCCCccct---------tctaattttttt

a score=45607
s chr3           143002584 2616 + 160039680 TTTGATTAACCTGTATTCCCATTGCTCGGCATTGTGAGCAGCAGGTAAAG---AATAAATGCTGTTTGACTTAGTGGTTTAACTTTTGTGGGTTATGCTGGACAGTGTTTCGTGGCACATATCTCTCCTAGACCATCAAATCCTC----CCTGCCACCCTGCCATTAGTTAAATATCCACCAAAAATGCCTCATGACTTGGACATCTGAAGAACAGTTGCAAATGAAACTTTATTTGTATATTTAAATCCTTTATCCGCATTTAT--------------------------------------------TATGT---GAAAAC---------TGGTGATGGATTCCCCACCA--------------------------------------------------------Ttttgctttctactgtctctgtaaaaagtac-atgaagttgaagatctaaaataacacaaaccgatgacgtcacagttctgtagcttatagttctcagcaggctccattcttttctgtgcacatggtcttgccacacccac-tcaagaggtccactgagcttggctcttcacagataggaagttcttaggatctactt---cccagctgaattgttgatcaaattc--tgttga--aactttcaagcttcttc-cttgctggatgtcagctgggggctgctat-ggctgacaaagtccagtttgattccttttgtcattacctcctccatctttaaaccagtggca---cgtgaagggctcgcctctgtggaatggctctg-tttcctcttctcactctactgtcaggttctcagaa--cgtgtgaccacat-ggatgtactggggaaatatagagtgatagtcttagtgtaagatggatttgatgatgagcct-----cagttgcacagaatccttctgtcatgtagtctaacatattAATGTTCATGATGTCTTACCACACTCAGAGTCTGAAAACTAGGAAGGGACATCTAATAAATTCTATCAATCACACTCTTATTTTAAATTGGGAAAAATTACATAATAATTAGAATCTAATA-ACCAGAACTCTCTATAAAGTCACACTGTAGACTGAAGAGTAGTTTCAGGAATAATTTTATTGATTGATGTCTTATCCCTTTAACCTTATAAATATGTCATTTGTCACTTACTGAAGCTTTAGCTTGATTTCTTTATCTTTCCATACTTCTATCTTAAACTATTGTGTTGACTAGGAAACG-ATCAGTATT-------------GTCCTAG--ATGCAAAATGTATGA-------TTTTGTTACCACAAGTGTTTATAGGGAAAT-CTCTCAGTTCTAGGTGAGAGGTGAGGAAGCAAGGAGACCTGCTATAGTTATACTAAAC-TTAATATTTTCATTATTCTGAGGAACGGAAACTCATAGGTCT-TCCTTTGGATAACACAAAGTCCCTGATAAACTTCCTTTTTAGATACAA-GTTTTATTTAGTCAATCAATACATAACACATCTCTATA---GGGTCTCAAGTGTTACTATGTGCAC-GAAATGGGGAGGAGAGTAATG--TTTGGCACTTTATAGTCTTGGAGGTGCTGCTGGCT----GCTTTGTGCTCTGCAAACAAAGGAGTGAATGGTGAAA-AGCTGGGGA-ATAGGAAGTG-TTATCTCTCCCTATGTGAAATGAAGGCTCTTTTCATTAACTCTGAGAGAGCCTCCTGGACCCATTGCATTCTCTCTTGCtctttaaagtagcttcttatagttcaggatggtcttgaactcaggtatcaagtagtcaaggatgactttaaatgtttgatctccctgtctctgcctcccaagggacaggagattacagggttatactaccatgaatatgacaggagataccagctaagcaagcattctacctgctgagctactccccaccccAACTCTTTCAACACCCGTGAAGTCTGCCCAGCTCCCAGAATGACCCCAAAAGGAAAGGGGG---ACAGAGGGAGACAGGCTTGGCAAAATATTCAGATTAAGCACAGTGAGTTTTCCTTT-TTCAATAAACTTGGCTTAAGAAAAGAAAACAAAGaaattat---------------------------------------gaaaaaaataaaaatataaaaaGCCTAAGGCAAAAGTTTCAAGGATGACTTTAAAAACATATTCGACAAAGTTCTAGTTTGTTCTGGAGAATTTTCAGA-ATGTTTGGTGATGTAAAACATAGTTAAAGGCTTCTTTCCTTTATGATAGCATCCTGGTTGGTCCAACTGAGACTGGTAATGAATTCCCAAAGAATATCTAGGTGTGAATACAAATCACCAATCTTGTAAAACCAGTTGGACAATCAAATAAAGCAAGCTCCTGACTTGTCTTTCTTTCCTACAATGCACAGGACACCAATACCATTGAGCTTG-TTGAGAATAAAGATGAGGGAATTGTCAGCCATTAGGCAGAGCAGGATCAAATGGAAACAGCATCCGAGAGGCCACTTATCACCAGTTTCAATTCAGCTTTATTTGTGACTTCATACTCACCCTGAGTGTTTCTCTA------CGTTTTATATTTTCCTTCTTAGAAATGAAAATAGATATAAGGATATCAAACACTAGATATTATCATGATGTGAAAGCTCTTCCCGTGTTTTCCTGAGTATTGAGAAAAAAG------GCGATAGAAAACTTTAAGTCTGTGTAATCAGAGTTCTTTCTGATGAATATAAGAAAGG------CCGTAAGAAAAACCCAGCATTATTCTTGGTGAGGATTTGACCCTGCTTCCATATTAACCTAGAGCTGTTTAGCATGAGCA
s HiC_scaffold_1 129188352 2556 + 233722169 TTTGATTAATCT-----CTTGTTGCTCAGCTTGATGTGCTGTGGATGGCACCCAATAAATTCTGATGGA----atgactcacttttcctgtgtta-----GACGTTAGCTTCTAGTGTTCACCTCTGCTAGATTATC---TCCCCAGCTCCTTCCATCTTGC---TGCACACACAACCAC-AGAAATGCTTCAtggtttgaaaattttttcaaaagtttcaaaTCAGACTCAATTCTTAGCTGTAAGccctttataaatatttgtgtttatctatttttggtactggatagTGAACCTAAGGCCTTGCTTATGCTAGGAAAGTGCTTCACCATGGAGCTATATCTCCtgccaaatttttgtttttatgatgtgAGGGTCAATACTCtactctctttctgtctctctcttttagCTTTCTATGATTGCTGTACAAATAATTACAGACCTAGAAGCTTAAAGTAACATAAATTTATGATATCA-GTTTCTGTAAATCAAAAGTTTAGGTAGGTTTGACTAGACTCAATACTTAGGGTATTGCAAAGTTCAAATCAAGACGTCTGCCAAGATGGGCACTT---AGAT-GAAAGTTCTTGGAAACCACTTTAACCCTATTTGATTGTTCAT----TTCCTTGATGACTGACTGCTTTGCTTCTTTATTTGCTGGATGTCAGACTGGGACTGCTATTAGCTGCAAAAGGTCTTTGAAACTCCTTTT--------------------CAATCTAGTGACAGTGAGTCAAGTTCTTCCATGCTTTGAATCTCTATGATTCCCCCTTCTGACCTTGCTCTCAGATTTTTAAGATCCATGTGATTAGATTAGATTTACTGAGATAATACAAGATTATCTCTCTATATTAAGGTCTACTGATTAGTAAACTTAATTACCGCTGCA-AGCTTTCTTCTGTTGTGTAATGTAACATATTCATAGGTATCCCATTTCACCATATTCACAGTCAGGACATTAGGGAAGATTATCTAAAAAATTGTACca----tatacttattttaaattgaaagaa---------------taatCTAATATATTAGACACTCCTGTAATGTCATACTGTAAACT----AGTGGTGTCA-----------Attaatggtaatttttt----------ttctggttagaTCATTGATTGCCTGATGAAGCTTTATATTTGTTTCAA-ACTTTTCTACCCTTCTATATGAAACCACTATGTTGGCTAGGAAAAGTATCATTCTTTAGTCAAAATTATGTCCCAGTGGTGTAAAATAtacaaacttgattttttttatcagaacCATTTATAGAGAAAGATTTTTAGCTCTAAGAAAAGGGTATTAGGCTGTATAAACCTGTTTTAATAATGCCAAACACTTATGGTTTTGTACTTCTGAAGAATGGAGAATCATGACTTTCTATTTTGGATAATAAAACTTCTCCGATAGTCTCCAATTTTAGatatgactttttatttattcagcaaatacCTAACAA--CCATATACCCGGCTCTCTGATACTATTTTGTTCACTGGAATAGAGTGGTGGATAAGGATTTCAGATTCTTATTatattggagttttttttttttttttgcattgaacTTTgctaacaaaaagtaaaatggtGGGGTGGCAGGAGAGATAGAGACTGATGGTCTCTTCTCACATGGTCCAAATGTTTCTCTTATATGCTC--AAAGAGTTTTC------CATAGCAATTCTTCTCTTTTTGAGAAGAAG--------------------TCTTGCATCCAG-----AAG--GCCCAGGA------------------------------GTCTCCCAAAGA----GAGATGAC------------------------------------------------CTTTACCCATTTGACT----------------------------------------------------------TAGTAGGAGTGGAGGCCCACAGAGGTAAAGAGAGTTGGGAAAATATTCTGCTTAAATA---TGAGTGTTCCTTTCTTCAAAAGCTTTTGcctaaagaaa--aaagggagaaatcacacacacacacacacacacacacacacacacacacacacagagagagagagagagaaaataatcttaaaagtaAGGTTTCAAAGATAACTTCAAAATTTCTACTGATGAAGTTCAGATTTGTTCTACAcaatttggggggacatttaatgACAGAGTAAACATTAaatgattctttgtttttgtattatcATCTTGGTTGGTGTAACTCAGACCCCTGATGCGTTCGCAAAGAATATCAAGGTAGGAATACAAATTGCCAATCTTGTAAAATCAGTTTGACAATCAAATAAAGCAAATTCCTGACTTGTCTTTCTTTCATACAATGCACAGAACACCAATGCTATTGAGCTTGTTTGAGAATAAAGATGAGGAAATTGTCAGTCATTAGGTGCAGCCCTAGCAAATGGAAACAATGTTTGAGAGGCCATTTATTACCAATTTCAGTTCAGCTTTACTTGTGGATAGAAACATATTATGACTGTTTCTCCAGttcatcttcttttattttttttaggaaaaaaaaaatcaaaaacaagggTATT---CAC-------------------AAAGCACTTGCAG------CATAAGggttctgaaaaaagaaatccacaaCAGACAAACTTACTTTTGTGAAACTCTGAATCTTTCTGATGACTAGGACAAAGGGTGGTTCTACAGGTAAAAAACAGCCCGGTTAGTGATGAGGATTTGAGCTTGGTTCCATATTAACCTAGAATTTATAAGCACAAGTA

a score=143445
s chr3           143007262 3419 + 160039680 AAGTAAGAAATGTCAAACAGGTGTGTGCTACCAGAGCAAACATCCCTGGGCAGCCTTCAGCTGCAGTAAGCAGAGTGCAGTTGGCAGGGTGTTGTTTGACATGGACTTGAAAAGCAGTTTGCCAAGTC------TTCTTTGTGCTTTCCTCttttctttctttttttt-------------------------------------------------------------------tcttttttctttttGTTAATGAAATGCCAGT---GAAAGAAAAAGGAAGAGCCCAGAAGATCCATCACAGCCCAATAGTTCAATGCTGAATGATAAGGGTG---TGTCTGA--------GTATATATAATACATTGAGTCAACAGTTTTGCAGGGGAATTAACACTCTTGCTCCTGTGTTCTAAGTGCTGGCCTAGACAAAGCTAGTCCTGAGAATAAGTATC---TGCTGTAGTTACTAA--------------GTATACAGGTAGAAGCATGTCTGAGGGAAATTTAATTTAGTTCACTATAAAAA--TTCCCTCATTGAAATCTATCTTGTAAATTAGATAATTGAAACTGTCTAATATATAGTAACTCAACATTTCTTGATTGGT-TCTTAAAAAAAACTTTACAATCAATGTCCTTTTATTCTTTTCTTTGCATTTAATTTCATTTGCACATGACTCGGGCTGATTCTTTT-GGTAAATTTAATTTGCCAGAGTTTGGCCCCCAGAGTAGAAAGAGTGGCTTCCTGTGACACAAAGCCACCAACTATAGCAAGGCTCAACTCAACTCATTTTGCTCCTTACACCTTTCAAACTTCTCAGATATGCTTATAGAC---------------GGAAGCCCTGGGGACTGGAGAAACACCCAGCATGCTACTGTACGGACACGCAGAGTGTTTTATAATCTGTCTTTATCTTTCATGGCTGCAGTGGTCTGGATAGattagagcaaattgggctaagcactgtccttggctccactcacgcagctgttttctgaagctaataagagctgcgggtgtacatccaaggatggaatttgggcccttttgtctttgCACAAACAGTTACTTTAGTTGAGATGATTATTCTTGAGCGACTGTTTTACAAGCACTCTCTCTGCCCAGTTTGACTCTCTTTCCACTTTATTCTTTATTGCTGAGACATTTATGAATATGGAAATATGTACCTTGAAATTCTCAATTTCCGGAAAAATAAAAATCTCCCCAATAAAACCTGTGAGGATCGCGAATGAACTGGGAAAGAGGGAA-CGACTCATCTAAATGGTGGCAAAGACACAAGTAACACCGTGAGAATGTGTTAGCATTCATTAATGGTAATAATCTGATTAAAATTTT-ATAGCACGCAGATCCTCGGCCCTGGGAAAAGGAAATCTGTCATTAAGTAACATTTTAAAGGAAAGTACAAATCACCAAATATGTTTATTTATTCAGATGTGAAAAATAAGAAATTACTTCTCTATCCAACTCCTTT---CTTCTCAAAAAAAAAAAAAAAATTCCATGCACCTCACTGCTTTCCTAAGGCCAGACCTTTTGAAAT---AGAGAATTGGTGTGACCAAAAAAGTTTTTATTGTTGGAAATTGCAACCTTGTCTCATCTTTGAATTTTTTCCCCCCAGAAAATAATGCATACAAGCAGAGCCTTGAGGTTTTGGAAAGGACTTCTTGCATAAATCAGCACAAGATACGAGTAATAGAAAGGAAGGACACTCCAGAATCTCCCGAT------------------------GCTCATTTCCCTTATGCTTTGAGCAGATCTCCTT-TTGATGGTTCTTGTTGCATTTTCTCTGAAGATGATTAATTTAAGAACGTGTTTAGTTATATATTGGAATAGTCCCTTTAAAACGTTCATAATTATATATACTGTCCTTGCCAATAAATATCAGTTGTCATAAGTTAAACATTTCACCTTTTGCATGTTTAATAATCTTTTATATAATAACTTATGCAAAGATAATCCCACTGAGTTCTTTGAGTGGCTGGAAATTTCTCTAAAATAGTGAA----TTTTTTTACTATCTGTCAGTGTGAACAGATTTTAGGTATTTGAGACCCATCGTATCTCTGCTTGAAACATTTtgaataccagctccaaaaccttgacattaataaaacattaaagttccaacttacacccataaaagtcaagaaatccagagttaaggtcgacccagctctcttaactctgtcctcctgcatgtaTGCATGGGGGATGGGACATTGGTGCAGGCTGTTGCTTAAATCAGCCTCCCTGAATAACCTGGAAATGTAATTGAATTAGTGTATAAAGTATTTACATACCCTGCAGTGGGTAGCCCCACACACTATATTATCCGTGTCTCTTCTCAGGGCCCTCATTTGAGCTCCTCCTTGCAGTGTTCCTGCCAGGCTGCCTCAAACACTCAGAAATCGGACTTGCAAATACAATTTCCCTTCTTTTATGAGGCTTCAAGATGAGTGATGCTCCCTCGGCATT-CTCGTTGCCTTTCAGCTCCTGGCCAGACAGATAGAGTTTGGGTAACATTCTTCCTCTTGGCTCACATCCTCAGGGTTGCTGGGTATTAGACAGTCTTGTTCTGTGGCCAAGGATCATTTTATGGTCAAAGTCAACCAGGTGTAGGTCCATTTGTCACATGAATATGAAAACTGAAACCTCAAGATTGAGTTTAggagcagactgtggagaagttaaggacactggctttgactccagctagac--ttgcaaataagttgttgttctgccagtgatgtcatgttgtcttttcagacctcagtttttcctcttcagaatggggatgactccattttgtagtctccattccttttaggattcagtgagattttgaagatttaaaaataaaatgtatatgaaaaatttgtttattcagaagtactgaataaata-tgttactatC-TCACTCACTGTGCAAGGA--AGTAATATATTGCTTCAGTTAACTCATTGCGTTTtttatttatttatttatttaAAAAAAAcaaagcaggatctccccatgtatcccttgctggcctggaactagctatgtagaccaggctggccttgaagtcatagcttctcaagtgtgtggcccctcaattgATTTACTTCTTTCCCACCCAGTCTCAGAGTGTGGGGCAGGATAGTAGAATGTTAAACTGTTAAAAATAATAAAAATGACATTTAACTATG--------AATGCTGT-CCCTCTCAGCCATAG-TCAAGAAGTGTGTAATACTAT--TTTTTAT--TCAAGACCAGCAAATATATTGAAAAAAATCA----ATGCTATATTGAGTATAAAGCGGTTAGTTTTCTTGGACGTTGCTATAGTACAAGCTGGTATACCATTTGTAAAGGCTCTCTGGCATTGAAAACAGAAGT-----GCTTGGCTTG-TTAACTCAGTAA------TTCTAGAAATCAAGCTTGACGAGTAAATAACCAGCTAAGTGGCTAAGACCATTTATTCACAAAAGTCTTACTGAAAATTTGGAAACAGCCTAACTATTACCATGAAACtat
s HiC_scaffold_1 129193656 3401 + 233722169 aaaaaagaaatgtcaaataaGTGTCCACCACAAGAACAAACATCCCTGAG-GTCCATTAGCTGCTG----CAGAGTACACTTGGCAGTGTGTTGTT-GACATGAATTTACGATGCAGTTTATTGAGTTAGTTTTTtcgtttctctttcttttttcttttcttttctttctttctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctttctttctttcttgcatgAAATGCcagcagggggaaaaaaaagaagaggttaGTGGTCCTGTTATTATATAATCACATAAAATTATCTAATAAGGATGGGGTATCTGATATTCAAAATATGTGTAAGGCACAGAGGCAGAAATTCAGTAAGGGAATCAATGCCT---CACCAATCTTGTAACTAATGACTTAGAGAAAGCCAGTCCTCTGATTTAAGGTTCCATTCTGGAGCCAATAACCACTATGACCTGTGTATAGAAGTATTAGCGCTTCTGAGGGAAGTTTAATCTAGTACACCGTAAAACCTTTTCCTTCTTGGAATATGTCTTATAAACAAGGTAATTAAAACTGTCTAAGACATGTTAATTTAGTGTCTCCTGattggccttttaaaaaatgacctaAAATCAATGTCCTTTCATTCTTGTTTTAGCATTTA-CTTCATTTGCATATGACTAAGCCTGTTTCTTTTTGGTAAATCTAATTTGCTAG--TTTGGTCCCCAAAGTAGAAAGAGTGGCCTCCTCTGAGATAGGGTTGCCAACTCCAGCAAGTAGCATCACAAGTCAGATTGATCTATATACTTTGCAAACTTCTCAGATGTGATCACTGACATTTGGCCTGATGAAGAAAGCCTTGGGGACTGGGAAAACACA-ACCGTGCTACTGT-CTGACATGCAAAATGTCTTATAATCCACCTTTATCTTTCATGGCTGCAGTGGTCTGGATAAATTAGACCAAATTGAGCTAAACACTGTCCTTGGCTACACTCACACAGCTGTTTTCAGAAGCTAATAGGAGCTGTGTGTGCACATCCAAGGACAGAATTTGGCCCCTTTTGTCTTTGCAAAAACAGTTGTTGTAGTGGAGATGATTATTCTTGAGTGACTGTTTTATAAGCAGTGGTTTTGCCCAGTTTAAatctctt--cattttattcttcatagTCAAGGCATTTATGAATATGGAAATGTGTAAGTCAAAATCTTCAGTttctggaaatataaaaatctcCCCAATAAAACCTGTAAGTATTGCAAATGAACTGGAAAGGAATAAAGCAAGCTATAGAAATGGTGGCAAAACCAGAAATAACACCAAAAAAA-GTGCTGACACTCATTAATGGTAATACTCTGATTAAAATTTTCATAGCATATAGATCCTTGGCCTTTCAAAAGGTaaatctgtctttaaa-aatagtttcaagaaaaatatagatTACCAAAAACACTTATTTACTGAGAtgcagaaaaattgaaattaactCTCAGTACAACTCCTTCTCACCTCTcagaaaata--------ttacataaatcTCGCCATTTTCCAAAGGCCAAACCTCTTGAAATGGAAGAGAATCAGTGTGAT-AGAAAAGTTTTTTTTACTGGAAATTGGAACTTTGgctcatctttgaatttcttact---agaaaataatacatacaagCAGAGCCTTAAGGTTTTGGAAGGAACTT---GCATAAATCAATGCTTGatataaataataa----gaaagataTTCTTGAATCTCTTGACTTTTTGAGGCATTTACAAGGGTTAGCTCATTTCCTTTATGCTTTGAGCAAATCTCCTTATTTATCGTTTCTATTGCCTTTTCTCTGAAGATgactaatttaaaaatgtgtttagttACACATTGCAACAGGGCCTTTTGGAAGGTTacaattatatgtattatatgtgcCAATT--TATTAATAATtgcaaattaaacattttcatctTTGCAGAGTCAGTAATCCTTTATATAGTAATTTATGCAAAAATAGTCTTACTGAGTTTTT--AGTGGTTGGAAAATTGTCTAAAatagcagacttttttttttactacctGCCAATGTGAACAGATTCCAGGTATTTGAGACCCATCGTATCTCAGCTTGAAACATTTTGAATACCAACTCCAAAAACTCGacattaataaaacattaaagttCCAACTTAAGCCCATAAAAGTCAAGGAATGTAGAGTTAAGGTCAACCCAGCTCTCTTAACTCTGTCCTCCTGCACGTGTGCACGGGTGATGGGACAGCAGCACAGGCTGTTGCTTAAATCAGTCTCCCTGCATAAtctgaaaatgtaattgaattaGTGTATAAAGTATTTACAT-CCCTGCAGTAGAGAGCCCCGCACACTATATTATCCACATCCCCTCTCAGGGCCCTCATTTTAACTCTTCCTTGCAGTGTTCCTGCGAGGCTTCCTCAAACATTCAGAAATTGGACTTGCAAATACAATTTCCCTTCTTTTATGAGGCTTCAAGATGAGTGATGCACACTCAGCGTTCCTCATTGCCTTTCAGCTCCCAGCCAGACAGATAGAGTTTAGGTAACATTCTTCCCTTTGGTTAACATCCTCAGGGGTGCTGGTGATGGAGCAATCTCATTCTGCATCTAAGG-TTATTTTATGTTCTAATTCAA-TAAATGTGGGACAACGGACCATATtaatgtgaaaatgaaaacatc-atattgaGTTTAGGATGGGA-----AAGACTTTAAAAGCACAGATTTTAGAT-CAGATAGACCATTCAAACCAATTCCTTGTTCTCttat---tattatttaacattttcaaacttcagtttctcttttgtaaaagaaGGATAA-------TAATAATCTTTATGACCTTTAGAGTTCCATAAGA-ttggaaaatttgaaaagataCTGTATATAAAATGATTGGTGTATAGAAAGCACTAAATGGTTATTGTTAACATTAGCACTCATTTTGGTAGGAATAATAAACTATTGCTTCGATGCACT-----------------------------------------------------------TCTCTTCCT---------------------------------------TCATGTCTTATAGAGGGTAGG---------------------------ACAGAGTCTCTAAGT----------AGAGTGGAATgt-------tcagaaatattaaaaatgaagtttaataATGATCATAAAAATGATGCACACCCTCAGCCACAGCTCAGGAAGTGTAcaatgatattatttttattgtttaggtaggcaaaga---tgaaaaaaatgataatatcCAATGATGGGTATAGAGAAACAAGCTTTCTCATACATTCTATTAGTAAAAACTGTTATACCATTTTGAAAGGTATTTTAGCAATGTATATGGAAATTTGAAACATGTCTTACTTAACTCAGCAATTATACTTCTAGGAATTCATC---ATAAGGAAATAATCAGATAAATGTAAAGGA-----TATTCATAAAAGCCTTTTTCAAAAATTGGGAAGAAGTTAAATGTTAATATGGAActgt

a score=128015
s chr3           143012349 6823 + 160039680 [encoded data, 7397 characters]
s HiC_scaffold_1 129197276 6277 + 233722169 [encoded data, 7397 characters]

a score=48025
s chr3           143020754 2452 + 160039680 TTTTTCTCCGTCCTGCCACAGTGTCGTATACGTTTTAAGACATGAAGAAAA-GATGTATTTAAGAGTAAAAGAAAAGCCGGATGCTAACTCCTGTATTTTCCCAACAGCGGTA-TGACTCATTTCAA--------------------------GCGTCTGATTTACACACCCATGAAGGAGCTCCTTCAGGTGAGGATGGT-ACTTAGGCGCTGAATTACAGGAATTGCCTCCCTTTCTCTCTTGCTTTGGGCAATTTCGTGTAATTACAGTCACCCGCCTTCCATTGTGCTTAGTGTGTTCTAGCTATGCCTGGGAAA-GTTAATCAAAAAACAAAGAGAAAGTCTGTGATGGGTAAT-GAGGCTACAAAAGTGTCTCCGCTGCTCCTTAGTTGGCCCCGTCTTTGGGGATGGACTCTGAATTGCTGCCTTCAAAACAGCGTCCCATTCAAAATGCCAGTCATTCTCTCCTAGCAAAGAAGGAAAAGGGAGTTTTTTAATTTTAGAAATTTCGGAATTGGAAAGTGAAAGGAAGGCGGT-GTGCTTCCTATTGTCATTTATCCCTTAC-------------------TCGTAACCACAGAAGACACCAGGTCAGTCCTCCCGTCCCCCAGATGGCCTTTATCTCTCCTT--ACCACAGAGAGAAGGGCAGTTTCTCTTCTCCTGGTCCTCTTGATTGTTTTGGAGCAATGTCATATTAAGAGCGTGTTAAAAACATACCCAGTGCTATGTTCTtctcatctcttggggagtagaggcaagaagagcaggggttccaagggacccttggctacacaggggttccaggctagcatggactgtatctctgtTGACCACACCACCATGCCCCTTCCACATGAGAGATAAATGGCCACGGTGAGGGGAGGTGGGAGAGGGGAGGAAGATTGGAGGGAGGTTGATTATAGGACTTCCCTACTCTCCAC-CCTTGCCTCAGAGTCTAATATCAAGTACTAGAGCTGTCACAGTCACAGTAGA---TCTGTGCA------TTTTGTAAAAG--GCTTCATTCAGTCCACTTCAGATATCCCCTGTGACGACACCAGTGCAAACCCTACACCGTGCAGCAACGTTTGTATCATTAATAT---TAGCCAGCCCTTATGAAGAAAATCTCTGGACGGCTTTCATTTCTTACTTTGCTTTTTGGAAAAGCTAGAGAAGGTGTAGGCT-GGGACAGGGCTTGACAGGAACTCCTGAGGAACCAGAGGCTTTACTGAAGCGCTGATGACCACAGCAGGAGGTTTCTAGAGCAT--GGCCGCAGTGTGTTGTCTGTGCAAATTTGTGGTATTTGTAGCCATTCCTGTCAGACAAGAGGAGCTTTCTGCAGAAAGCACACGTCGTTTGCTTCTGCAGCCTAAACGACCCCATGTTTCTCAGCTGT-TGGAGTGAGCTGTGTGGAGAGACAGCATGCTTCTTCCTCTCCATACAGGGCAGTGGAATTTGGGAACGCATGCTGAAGGAGGAGTGACC-----------ATTAGTCTCTGGCATCAGACAACTTCTTGGGATAGTGATAGTGGTGGCTAAGACCTTATTGAGAAAAATAATTCAGTTGTTCAAATTTGGGCTTAGATCATGC-TGTATCTGGTCTAGTCT-GTGGCAAGGAGCCATCCTTTTACTTTGCAGAGAGATGTCCAGTCAGGGAATGATGTCGATGCAGCCTGTCTTTACTGATCCTCCGACACGATAAGAG--------------TTGGCTAATATATATCACTCACAGCATGTGAG------------CCCAGAAGTTGTTTTTTTTTCCTCTTAAATCTATTTAAACGTATTT--CCTTGACAATCCAAATGATAAGAAC-TGTTAGTCTATTAAATATGCAAATGCTCTATCAACATCAGCT-----ACTTGAACAAAGGCGTGCACACTCAGCTTTTCTGAAACTGAACAGAGTCCACATATTTC----TGTT------------TCTATTTTACCTTCTTGGATGATACAAATTTGGTGTGCCAAGCTTCAGCAAGCAGCTGAGCCCATAAATGAGAGGTCAGTGTGTCCAAAGTTCCAGCTTTGGTAGCTTCAAGGTCATAGAGA-GATTTTTAGCAAATAATTAGACAT-TCGTGATTTGGAGGGCAACCAGAAGCATAGAGTGAAAGA--------------GGCTAGCATG-----AGTGGCCATATTTTAAACATTCAGACCTAGTAAATTGCCCGGGACTCCACTGAGGCATCATATTTTATTACTGTAAAATTTGGGGCCTTATGAAATTAGGATAATGCTAATTACAAAATCAGCACTGCGGTGTCATGAaaagatcactaactcaggaaattaggagacgagtcttagtctcagctAATAATCATTAATCATT-TCTTCACTTCTGAGCAATTACTGTTTACCATGGTAGGTATTCCTGCAGGCAACTGCTCTAGCCTGCACACTGAGGCAG-CAGGGAGCTGCTATCATGCCCCGCTCAACCTGAAGAAAATGTTCAG--AGACTGACTCTCCCAAGGTCACTAAG-TCTTAAACAACACAATTAGAAATGAACCTTTA
s HiC_scaffold_1 129205652 2292 + 233722169 ttcttttcctctctaccTCAATGTActacaagttttaaaatatgaggAAAAAGCTGTTTTTAAGAGAAGATGTAAATattcatacaaaataatatactt--ccaaCAGAAACACTTACTCATTTCAATGTACTGTATACATGCAAAGCTTTAAAAGtctgatttaaaaatatctgaagcaACTCTATCATATGAAGATTGTTACTTCGGAGCTGAGTTACAGGAtttgcctctttttttctcttgccttgaGCAATATAGTCTAATTACAGTTACTTGCCtctcattctgtttagttttttct-gCTATGCATGAAAAAAgttaatcaaaaaacaaaatgaagagctGTGAGGGCTGATTGAAGTCACGAAGACTTCTCTGTTGCCACTGAGCTGTC-------TTACGAATGGAATCCCAATC----CCTTCAAAGCACCAT-------GAGGTGGCC-TCTGCTTCTGCTAG----------------AGTTtttcaa--------------aaatctgaaaatgaagagaaaattgcagcctttcctatctttatttatttcttacctGGAGTTGGTGAAAGATTTTGAAACCATAGAAGACACTAGATTGATAACCCCAG-----AAATGGGTAATATTTCTCTTTGGAGCAGATAGAGAAGAGCAGTTCCCCA-CTCCTCGTCCTCT-GCGTGCTTTGGAAAGATATTGTATTAAGAGAAT------------------------------------------------------------------------------------TACA----GGTTCTTGGC--------------------------------CTATCCTC---------------------------------------------------------------------------------TCTCTACCTTCCATGCCCAGACACTAGACCCAATGCCAGCCACTGAAAC-----CAATCCCGGCAGAGGTTTTGGGCAGGTATTTCCTGCAGAAGTAAGATATCTTAGTTCATTTCAAATACTCAC-ATGATAACACCAGTGCAAAACCCCAACCACATGACAAATTTggtatctttaataaatattattaacccagataaa--aaatcacagaa--------atgtttTGTGTTG--TtcaggaaaggaaataaatagtATAGGAGAGGGATAGGAGATAATGACAATTCTTTAG-AGCCCTAAACTTACTTGAAGAATTGGAGGTAATGGTAGTATATTGCTGGAGCACCAAACC----TTTGTTATCAGCACAAGTCTGTGGCATTT--AGCTGAGCCTGTCAGACAGCAGGAAATTCCTG--GATGGTACATACTGATTGCTCCTA-AGCCTAAACAATTGCATATTTCTCAGTTGCGTAAGGTGAGTGGTGTTGAAAGGCAACATGCTTTTCCT-----ATGAAGAGCAGTGAAATTTGGAAATATGTGCTAAAAGAGAAATAGCTTTCTATGATAAATTATCTCCTAGTA-AAGACAACTTCCTGG-ATAGTAATAATGGTTGCTAAAACTTCCTTGAGAAAAAAGATTCAGTAGTCCAAATTTGAGCTGAGATGGTGCTTGCCGCTGGTTCAGTGGAGTAGAAGGAAATTGTGAGCCTGCTTTGGAGAGAAATGCTGTGGT-GAGACTCATGCAGATCTAAATTTCCTTTACTGATACTTAGATATGATAAAAGGGTTATTGAACTTTCAGAGTAATGTGTACCATT-----CATGTAAGAGGACTGTAAATTTCAGgggattttgctttttgct-ttgaaGTTATTCAGAGTTATATAACCTGGATAAT----ATGAAAAGTATGTGAGAGTCTATTAAATCTACAAATGCTTCATCAATTATAGCTCTGTGATGTGATCAACATTGTGCACACTTAGGTTTTTGGTAAATACATGAAGCCCAGTTACATCAAGGTATTAAACACATAATACTCATTTTAACTCTTTGGCTGAAACAAATTTGGTGTTCCAAATTTTAACCAGTAGCTGACTTAACAACTGGGAAGCAAATTTA-CAAAAGTTCCAGCTTTGATTGTCTTAAGGTCTTATAGGCGACATACA--AAATCATCAGTTATGTCAGGCCTCAGAGAACAAACAGCAGCATGAAATGAGAGACAGAGTCACTTATGGCCGAGCATGTCAGAAAGGGATCTATCTTAAA-ACACAGATCCAGTGAATGACTCAGCTCTCCAGTGaggtattttactttattattgtgAAACTCATCACTACATGAAATTAGGGTAGTGCTAATTTCAAAATTGTCACTGTAGTGTTAACTAAAGATCAAAACTTCAGGAAATCG------GAGTCTTATTCCC-GATAACAATCATTAATCATTATCTTCATTTCTGAACAAGTAGTGTTTACTATGTCAGGTATCTTTGTATACATTTTCTCTAGTCTGCCCAATAATTCAGTCAGAGAGAGATTACTAC-CCATGTTCATCTTGAAAAA---TTTCAGGCAGACTGATTTTCTCAAGTTCTCCAAGCTagtaaataaaaaagttaaaattcaaaCCCTA

a score=95250
s chr3           143034337 3996 + 160039680 [encoded data, 4235 characters]
s HiC_scaffold_1 129215045 3563 + 233722169 [encoded data, 4235 characters]

a score=194232
s chr3           143039156 6327 + 160039680 [encoded data, 6704 characters]
s HiC_scaffold_1 129218960 6136 + 233722169 [encoded data, 6704 characters]

a score=39226
s chr3           143047130 1424 + 160039680 tggccTTCCTGAATATTCTTTATAGCTAATTACATTTCCTAATGGTAGTAAAATAAGATGTAACCTTTTCCAGATTTCAAAAACGTCATGGTGATCTTTAGACAGTGTAATGAACGAGGTGGACATCTTTCAAACCTGTAGGTTCACAGCCACCATAGAAACCATCACAGAACCACTGTACA-CCTTTTGGTAAGTTACATCGAGATTCAAGACTTACAACTTAGTGCTTAT----CTTTATTGAGTTTTGCTATAAGAACTAAATTGCCTTTAACACA---ATTCTTACTTCCATTAATAAAGACTTTGGTTTGCACATATGGTTTGCCTAGAGCTGGGTGTTTCATTACTTC---CTTCtttaaatttaaaaaaaaaatttttttttttttGCAATGAGCCCTAATTTGCTCCAGCTGCTGTAAATTGGCTTCTAGTAATTTTCACATCTTCTTCAATGCACATTGACATCTGTAAGCATAAGGGCTTGTATTAAATCTTCAGTTATGTTTGTGAGAACTCATCGTTGGCTAGGACTAAATTTTGCCTCTAAGATGGTGGAAATGACACTAGATATGGCATCTGCTGGTCTTCTACATCA-AAACCAGGAAGGTTTCAG-GAGAATAAATAATATCCTGTTGGTAAGAAATTAGTTTC----AAGTTTTGGTGCCCTGCCTTATATACTGTGGTACAGCTAAGAGTCATATGATGCCCCACAAAATGTC-TTATGTTGTTCCTTAGAAGCATGAGGGTACAAGGGTGCTAAAATGACAAGTAGGAAGGG-GAAGAGAGTTGTCCTTTCCTGGGATGTAGGAAGATTGACAGGTGCTGGGAAGGGAAGCAATG-----------------TTTCCATCAGCATCCCTCACTTAC------TTTAGTGTACCATTTCTCTTTCAAAATGTTTTTCTTctttgctttcggctacaatcagttaaggtccactaagattcgttgaaaatggtttaaattacctctttggaggggtctttgcaa-tttactaaaacagtttagatgac--caagaaaagcttcagaatagaaaagaaaactgaatttctagtagtgAGGTCTGAACCTCTTTGGTGGACACTTGAGTGGAAAGGGAGAAACCTGCCAGG--TGAAATGCATGTGTTTGCAACTTATAACATTTGGCCCTTGTTTGGGCAGAACTGCCTATGGAAGACCCAGGGCACAC------------------GGCTGTTGACAGCCCTGAAGAGTTTCTTCT-TTCTG--TATCCCAGGGTAGGTGATCAGGTAAATTATTGCCATGCATAGACAGCGTGA---------CCATCTTGGCCCATTCCAAGAGTCCCCAGTGGAGTTGGTTGAGGTTGATGTCTGGGTCTCCTCCATTCCACTGTGACTTCTTTCCCTGCTCCACTCTTGCTTCGACATTTTCCTTTTGCAGAAGTCTGA--CTCTTAGTCATCCTCTATACTACATTCAGGC
s HiC_scaffold_1 129226558 1410 + 233722169 TAACTCTTTTGAATATTCTTTATGGATAGTTAAGTTTCCCAATATTGATAAAAG-----GTAaccttttctcaaataaaaaaa----atcatgatttttagGCAGTGTAATGAAGGATGTGGAGGTCTTTCAAACATG--ATTATAAGGCTGCTATAGAAACTGCCTTTGAATTACTGTGCAGTTTTTTGATAACTCACCTTGAGAGTAAGGGATTACAATTTTTGCATGATACTACTGTATTGAGATTTGCAATCGAAACTGAATTCCCTTTAGCACATGTAGCTGTACTTCCATTAATAAAGATTTGGGTTGGCGCATATGGTTTGCCTAGAGCTGGTTGTTTCATTACTtccttcttctttaaattt----------tttttttaattttgcaaggAGCCCTAATTTGTGCCAGCTGCTGTAAATTGGTTACCAGTAATTTTCACA---TCTTCAACTTGCACTGACATCTGTAAATATAGGGGCACATATTAAATCTTTGATTATATGTGTGGGAGTCCATGATCAGCTAAGACTACAGTTTGTCTCATGGACATTGCTAAGCATATT----------TCTCCTGGAATTATGTAGCAGAAATCACAAAGACCCAAGTGAGAATACACATTGTCCAACTGGAAAGAAATcagcttcaaagaaataattagaCCCCATCAT---TCCTGCAATGCAATTATGAATCACATGACATTTGATGAAATATCTTTATGTTGTT-TTTAGGGGCCTGAGGGCA--------CTAAAATGAGACGTgggaaaaatgaagagaacatTTTCCCCATGAAAACTCGGGGGCAGTAC---TGCTGCTCAGGGAAGCAGTGAAATAAGATAGTGTTGATTTCTGGCA------CACATTTACTGTTCTTTTAGAGCCCCATTCCCCTTCTAAAGTG-TTCTCTTCTTTGCTTTCAGCCCCAATCAGTTAATGTCCACTAAAATTGGGTGAAACTGGTTTAAGGTACCTCTTTGGTGAGGTCTTCGTAATTTTAGTAAAAGTGTtttgatgacaaaaaaaaaagctacgaaataggaaaaata-------ttcttATGATAGAATTTCAAATTCTGTGCTTGACACTTAGATACAAAGAGAAATGGTTGTCAGAGTTAAAATCAGTTTGACCAGAATGCATTAGAAGTGGGCCCTAGTTGGGCAGGTCTATCCAT---AGGCACACAGCACACGTGCCTTTGTGCAGGTTTGGCTATTGGGAAACATCAAGAGTTTGATCTGTGCTGACTGTCGTAG----GGTGATCA-------TCGTTCTATTGAGGGA-AGCCTGGCACTTCCGCCCACCTGGAGACAGTTCTAGGG--CCCTGTGGAATTGGCTAGGGTTCTCATTTGGTTCCACATCATCCTG----GACTT---------TTCCATTCTTGCTTCCATCTTTCCCTTCCACTAGTGTTAGAACCTCTGATACTTGCTCTAAACATCATGCATGC

a score=33890
s chr3           143049897 2304 + 160039680 atttatt--tatttatttCTCCTGTGACTTGTGGATCTCAAAGAAACCAGAGAGGAAATGTTATGAATGTGTTT--AAGTTTTTA----ATCTCTGGACAGTTACCATTCTTAAGGGGAAAAAAAAAACAAGTTGTCTTTCTTTAATTAGTAATTATTTCTTTCTGAATTAGAACATGCATTTATTCTCTCCCTGCTACAGCCCCGAGGTTTTATCTATTTGATTTGAATTATATTTGAAAGTAGTTTTCTTGTTATGCAGATATTTTTATTGCTTGGAAGAATGAGGTAGCTGAGACCTATATAAATATTAGGGCAATGATTACAAAGCAGTGTGATGGAGCCAAGTATCACCTAGGGGTGGTTTAACATTAGATGTTAAGAGGGACGCTGATGAATTGGATTATGTGTGGGTCAATTTGCAGGC----GAGCTGCTCTTCCAGAAAGTGTTCTGTG----------------------------ATACTTATAAAACAGTCTATATGCTTACACATTTTTGTATTTATGATGTGTAGAAAACACATATTTGTAAATAACTGAAATACCTGGGTAATacacacacacacacacacacacacacacacacacacacacacacacacaAagtccagaagaaggccttggattcctgggcaattgtgagccattgacatgggtactgggaaccagacataagtcctctgtaagaacagtaagcaatcttaactgcacaaccatctctctaCCACtgaccttgaacatctgatccccctgcctccacctttcaaatgctggtattataggcatgcccttatgcctagtttgtcagaggccagaaagccttgtatattctaggaactgagcaactctagacttcaaaaactctgagctgcatctccagctcTCAATTTTTATTGTATTTCTACATTTCTGTAGCATACCTTCTAGTGACTGTTACTGTGTTGTGGCTGAAAGATAGACTCATGGATGTGTGAAAGTCA---GTACAATGTCTGCTTTAAAAAGGCGAGAATGCAAAACTCAGCTCTGGAATATTACAGCAGCACA-GCTTCTCTGGTAAT-ACTTGACAGCTTTCATAGTTCTGAGTAGATCGCTTCCTCTAGCTTCATAGATATTAGATTAGTTACAGGGTTTTAGTTCCCCAAACATTAACCATAAAAACTATGATGATAGTAATAATGGTAGGATTTCATTGTTTTCCTGAGTGTATGAGATGTGGCAGG-----------------------CATAG-TGAGGTACTTTGCAAATAGAATCTCCAATAATAGC--TGTAAAATTTGTGTCATAGTTATTTTCATCACTCATATGAAGGTGTCTATCGCTCAG--AGAccaggttcaatggcctcattttttccacttagacatgccagtgttgtcccaacttggcaccatttgtgcgttctgtttgctttgaacactcaatcccatcATAGGTTCTGCATAAGTAGCCCTGCTCTGTTCTCTTGTAGTCTCAGTAGCCCTGCTCTGTTCTCTCGTagtctcaactaggacatacatcatccgcccttggaggtcttccctcaccacagacatgtgtta-cccatttca----tgttt--cactctact-----------------------------tatgctt-----agtagctt-----------------------------------taacattatccagaatcatcctgtttctttgtctggttatct--------cccataaggattaaccttaag-ggcacaggaaccgtagtat-ggtctcagtttatccacagtgcatagtagctgcacaatatataacagttggctgaatTAGCAGATGAATCCTGTGGGACTAGTGAGGAGCAGATCTGTGATTTGAACCAAAGTATGGGTGGCCTCAAAGTCTATGGAATTTATACTCTAT-TTAGTTTCCTGTATAAATCTAATAGTTAATTTC-TGAAAAATTATAAAATACCCAGCCTTGAATCAAAACTTCATTTGAGTCATTCAACCAAAAACATATTTGAGTTTTGGAAAGCAATTAATTTCAGGGAAATGAAAGACGGATGCAAAAATTGCAAGAAGTTTGCCCCTGTTTGTTAGTGAAGAATTGAGCCAAATTAACAGAGTTGT-CTAATATAC------GATGCCATAACACAATGGCAGAGTCTGGTTACAGTGTAA-GAAAATAGGTTGATTTCAGCTCTCAGTGTTGGTGGTACATGGTTGAGGGTGCACTTTTGGTGTTGCCTTTCTTACTCAG------CAGCGTtcc-------------------------------------------tctcttcttacaaagccaacagta----atcatgg-ggtgccaccacgaagactttatttaatcttactcactttcctaaagctctgtctctaaacaacagctggattgagtttctgCACTCTTCATTCT-TCACAATGAGAATTAAACTCTGATGTgag
s HiC_scaffold_1 129229972 2051 + 233722169 atttattattattt-tccctccTGTGACTTGTGTatc---aggaaaccagagagagaaagt----aatgtgttgggaagttttcattttatttctggacAAGTAGCATTTTTAA---------ATCAAGAAGATGGCTTCTTTTAATTAGTAAT-ATTTCTTACTggattagaaaatatttcttttct-tctcttctacaACTGCAAGGTTTCACCTGTTTGATTTGAATTGTATTTGAAAGTAGCTTTGTTAGTGtgcagatatttttattatttggatGA-TTAAGTAGCTTAGGCCTTAGTAAATATTAGGGCAATGATTATAAAGTAGTGTGATTGAGCTGATTATCACCTAGGGGTGGTTTAAAGTTAAATGTTAAGAGGGATGCTTATGAATTTGATTATGCTTAGGAGAATTAACAGGTTTAAAAATTGcttctttagaaaatatattatgaACACTTAATTCAAGTTACAGTAGTGCAACATTTCTGACCTAGTCTATATGCTTAAACATTCTTGTATTTATAATGCAGAGTGCATGCATATTTATCAGTGAC------------------------------------------------------------------------------------------------CAAGGGAGAGATGTTG---------------------------------------------------------------------------------------------------CCCTGT--------------tattagtatt---------------------gttttt-------------------------------attgttcagCCCTAAGTTTGGTAAA---------GCATCTCTCAGTGctagtttttatta-------aaatatttg-----------------------aatatgtttGGACTAAAAGATATACTCGTTGGTGtgtaaaaagtaaatgtaaattttctgtttctataggGTGATAAAGTAAAACTCAACTTTGTCACTTTAGA----TATATGGTTCTCTGGTGTTGACTGGAGATTATTCATAATTCTGAGTAgaaaatttcttttggttttgtacATACTGGATTAGTTTTAGAATTTCAGTGCTCCATGtattaatgataatgataatgataataataatgataataacactTCA---ATTTTGAGGGTGCTTAAGATGCTGCAAGATGCatctattttcacaatatctcATTGCTGAGGTATTTTGAAAATAG-ATTTCTAATGGTAACTTTGTAAAATTGGC-TTATTGTTCTTCTCACCTGATGTATGAAGATACGTGTCACTCAGAAAGAGGATGTGCAAT-GTCTTATTTCT-----TTAAACACATCAAACTTGCTCCATTTTGGGACCA-TCATGCATTCCCTTTGCCTTGGACACT-------------GTCTCTGCTAAATTTGC----------------GTAAT----------------------------GTTTCAATGGGG----ACAACATCTGTTCTTTAAGATCCTCCCTT-CCACCTACATGTATTATTCCATTCTAAGCCTGTTTACCACCTTAATTtcagaaattattattttgtgtgtgtgtgtatgtttgagacagtatcttgctgtgcctttcaggcttgccttgaactctcCTTGTAGC-TCAGTTGAAatcatcttgttttatttgattgttcTTTTTACTTCACCTGCAAGATTTACCTCTAGGAGGGAGAGGATTTGGGTTGTCACTACCACTGTTTCCACACTGCAGAACAGCCCCCCAATACAGA----TTCGTCAAGTTAGTAAATAAATTTTACAGGAC-AGTAAGAGGCAGAACTG-AACTGGAACTGAAAT----TCAACTCCAAGGTCTGTACACTTTCTATCCTTTACTTGTGTTCTGACTGAGTCTTGTGATAAATAACATAAATAGGTGTCAAATATTAATCTTTAGGATCAAACCTCTTTTGAGTTTCTTgatcaaaaa-atatttgaattttggcaAATAATTAACTCTAG------------------------------------------------------------TCACCCAAGTTAGC--AATTGTACTAGTCCACTCTCAGGTTTTAATAGCACAACACTATCGACTGGataaatttcaaggaaaatagctttattttggtGCTTA-TTCTGGAGGCTTAAGTTTGAGGGGCCATGTATGGTGATAGCCTTCACCTCAAGGATAGACAGGGATCCTATGGTGAGAGACAGGCACCCTGTGGTTGTGAGCATACTGTGGTCTTTTCTTATAAAGCCATAAGTATTTGATCCTGGCAATTCTACCCTAATGACTTCATTCAATCTTAGTCGCCTCCTCAGGGCATTATCTCCAAACACCAA--GGGT--AGATTCTACTCTTTTTAATATCTTACAATGGAGAATAAAAACCAATGTGAG

a score=91174
s chr3           143052833 2710 + 160039680 tttcttgaaagtcttccacagtccagaattttcaccaatttgggttattttctccccaacagttaaatggaattaatgaggtCCCTCTGAGTTTCTGCCCTCTATTTCTCCCCAGCAGATGTGTACAAATGTCTCTTATGGGAAAATGCAAACCACCATGGTGTGAGGAAACTAGGCCATGATTGAGACACTGGAAGGGAACAAAATGTCGAA---CAGCTGACTGCATAACTAAGAAATCAATCACTGCCTAGGATGCTTTATTGGCATAATTGGCAATGATTTATAGGATAATGGTAAGAGTCCAACTAGGCATATGTAGTCTTAATACCACTATAGCACACTGGTGTGGAGTCTTAGTTAAGACAACATAATCAGACTGTAGAAGAAACTTTAGA--TACTTATTTAAGTCAGCTAATAATTATGAACAAAAATTTTTACATGAGCATATTTTGTTTAATA-ATGGGCAAATTTGTTTGATAG--TTTAATGAACTTTAGAAGCAAAATTGTGCTGAAGACAAGCAACCAGAAAGTATTTGTCCAGTGACCATGCAATGGGTAGTGTTCTGCACACACCCAATGTGCTATATTGCCTTATGAATCAATATTGTAATAGAGAATGTTGTTTACAGAAAATAATCTGGTCTGTTGAGTGCCAAGGAAACAGAAATGGGTTTAGAGGCAGAGAGTGTACAATCAGGCCACCGATAGACTCGGTTCATTTAAGAGGGCTAATGGAAGGCTTATCTACTGAGTTGCATCTTGTAACTTAGTTGTTAAATTTATTCAGGAAAGATGGCGTTAGTGATTATTCTGGAAACTAACTAGTGGCTTGTGAGAGATAATTAAC-AAACTTCCTGTTTCTTCTCTTGGAACAGATGGATACTTTTGAGATGCAGCGGCACACGGAGCTCAGTCTGAGGGCATGCGTAGCTCAGTCGATTCCATTTGTATAATGAGGTGCTACTTCCGTGTGCTTGGAGGGTTGCAGCTTTTCAGTCGCACAGTGG-----------------------ACTGAGCAGCTTGAGACAGCAGCCAGCACTGCCTTCGGGAACAGGCTTTTAAGGACACTGCCCT-AATCAGC--GATATTATTTTATTCCCTGTCTTTTTTTCCCTTCCTTAGTTAGTAAAACACATTTAGTCTACCTTATTGTCTCTCCTATGGGGGTGCTGGCATTTAAAAA--------CTATCTGTGTAGAACTTGGGGAAAGGTCAGAT---------GGATGCAT-----GTTTGGGG----GGGAATGGTATCTAAATCATGTGAAATACTACAAAGACAGACAaaggggggagggagggggtggaggagggaggggcagagagagaa-agATCATCTACACGAATTTTCTTGTTGACTGACTATTCAAATGAGAACTGCTCTCTGTGACAAATCAAGGTTTTGGCAAATCTGGGTAATTATAGCCCAGAGCAGGTATCTTTAAAGAGCCTCCATGTTTCTGATGCAGGCTTTATTTTGAAATGACCAGTCAACATTATTAT-AACTCTTGAAAGTGCATTGCATATTTACATACGTGATGCTCATGAGAAAGAAATTTGCCATGAAGCTGATGAAGCTCAGCCCTTTATTTATTTATAAGAATTCTTTCGTTTCTAATGGGGAAAGCTAGAAGTTCTTATGCATAATTTTATATAATTTCTTTTTCATAAAAAGCATCTTCCTTCTCCCATAGAAGAAACTCAACTATGCACATATTCTAAAGCTGCCC-CATTTAAAGGAGGAGG--------------------------TAAATT---------CAAATAATGGCTTGATGGTTTTCATGGGAGAAGGATTAAGTGTTGACTCAAATTCACCATGTTTAAGTTAACTTGATTTCTAA---ACAGGAAGCTCAGAAAGAAGACAGAGGAATCTAGAAAGAATCATGGCATCTCCCTAATATTTAGGACTTGTTCAATTCTCACCATCAGTGAATAGGGAC--AGAACTGTGCTTGAAGGCTATGACAGCCACTTTAAATTGTGATTTTAGACTATGAACTCAATTGAAGGCAAGTTGAATAAAT-TTTAAACTGATTGAATTTGAAGAAAATGCTGGACATCCATCTCCATCATCGGTTGTGAAATCAAGCCATTGTGACTCATCCAGATAGCC--------AGGGAATCAAAAAAGAAGTAAAAATTAACTCGCATTAACCCAGGCGTTGTATTTCTTGAAGGGTGCAGCA------TACTGAGGAATAAGAATGTAGATTTGGAGTTAAACAAA---ACAATCATGTTTCCTCTGTGCTCAGAAAACTTACACAGCATACTCTCTGAGGTCC-AATGCTTGCTACAGCATTACATCATCATGGAACTTTCTGG-TTTATCTTTCAC----TCCCAGTTTGCTTGTTGTGTCTGTTACCTTTTCAACAGAACAGATGCCAGTTAAACATTCTAATTT-CTTTCTCACTTTCTGCTGGGGTTGAGCCCCACTTCCTACCCACCAA--ATAGTA------------TAGCACCATGATATAGTGAAGCATGGTAGCACTCATCTTAATATCTCAACTGAAAAACAAAGGAGAAAGAGAACCCAGACTTGTGGACTTGCGTGAAGGGA-TGTGAGGGAATCCCTGTGGTCTAC-CCATGCTTCTGATGCTTT--------GAAGAAAGTGCATACACAGTGAGATGGTACTTTAGAAA----------CTCCTGTCTTATTGTAC--TTTGTTTCTCAGTTCTTTGCTCTTGGAGTCCATGGCTGGTTCTGCATGGTGCCTTCA------tgttgtggatggctctgtgctgcttgtattttat
s HiC_scaffold_1 129232208 2713 + 233722169 ttctttaaaaatctttcacaattcagaaatttcatgaatttgggttgttttc--ctTAACAGTTAAGTGGAATTAATGAGGTTTCACTGAATTTCTAAACTCTTTTTCTCACCAACAGATGTGTATAAATGTCTCTTTGGGGGGAATGTGAACCATCATGGTGTCAGGAAACTAGGCCATGATTGAGACATTTGAAGGAAAACAAATGTTGAAGAACAGCTGACTGCATAACTAAGAAATCAATCACTGCCCAGGATGCTTTATTGGCATAATTGGCAATGATTTATAGAATAATGGCAACAGTCCAACTCGGCATGTGTATCCTTAATACCATTATAACACTCTGGCATGGATTCTTAGTTAAGACAACATAATTGGACTGGGGAAGAAGTTTTagagatatttatttaaattaactaATAACTA---ACAAAATTTTCCA-------ATGATTTATTTTATACACTGGTATACTTTTTGGACAGAGTTTAACAGAATCTGGAAGCAAAATGTCcttaaata-----aattggaaaatggCT---------CAAGAAGTTGTATATTGTTTTGCATATAGCTGGAATG--ATATTGCATTGTGAATCAGTATTGTCATGTGAAAAGTTGTGTACAGAAAATAACTT----TGTTGATTGCTGAGGACACAGGAAGGGGCTTAGAGGCAACGAGTGTGCAATTGGCCAACTGACAGATTCAGTTCATTTAAGAGGAGTAATGTAAAGTTTATCTACTGTGTTGCATCTTGTAACTTACTTGTTAAATTTATTCAGGAGAGATGGCTTTAGTGATTATTCTGGAAACTAACTAGTGAGTTGTGAGAGATAATTAACAAaacttcctgtttcttctcttgGAACAGATGGATATTTTTGAAATGCAGCAGAACACTGAGCTCAGTTTGAGGGCATGCATAGTTGAGTTGCTTCTATTTGTATAATGAGGTGCTACTGCT-TGTACTCAGAGGTCTACAGTCTTTTATTTGCACAGTTGTACAACTCAACTGTTTCCACCAAACTAAGCAGCCAAATGCAGCAGCCAGCTTTGCCTGGAGGAACAGACTTTTAAGGACATTGCCCTCAaacagctttgttttcttttttcccctgttGCTTTTATTCTACC-----TAATAGGGTACACTTAGTCTACCTTATTAACTGGCCTAGCTGAATGCCAGTATTTGAAAATAGTCTACCTCTCTGCACGGAACTTGTTGAACAGGCAACTATGAAGCAAGGATTCGTTGCTAGTTTCAAGTGTCAGAGACTGAATCTAGGATCAGTGAAACAGTAAAAAGAC-----------------------------------------AGCGAGAATAGGCCAGctctaagaattttctttttgattaactATTTAGATGAGAACAG----ATGTGACATATC-AGGTTTTG-------TGGGTGATTATACTAGACAGTGGGGATCTTT-AAGGGCCCCTCTATTTCTGATGTATTTCTTATACCTAAATGGCTA-TTAATTTCATTACAAACTCTTGAAGGTGCACTGCATGTTTGTATTTTTGCTACTTATGAGAGAAGAATTT-TCATGAAGCTAATAAAGTGTGACCT----TTTATTTATAAGGATTCC----TTTCCAAGGAAGAAAGTTAGAAATTTATATGCATGatcttg---aattcttttttcttaaaatga-----ccACCAACAGTGCATGAATTCCATCCTTACAC--AACATGAATCTGCCCTTGTTTAAGAGAAAACAGTTGTAAGGCCAACAGAAACCTTTTTTGGATTTCCAGAAGACAAATTATGACTTGATAGTTCCCATGATAGAAG-----------GACTTAAA-TCATTATCTTTAAGTTAGCTTGATTACTAACTCAAGAGAAGTTCAGAAAGAGGATGAAGAAATGTAGAGAGAACCATGGAATTACCACAAGA-GTGGTGCCTATTCAACT-TCACTATCATTGAATGGTAATGGAGAAAGATGTTAGGGGCTTACAAAAGCCATTTTTGATTGAAACTTTAGACTTTGAGTTC-CTTAAAGGCAAGTCAAATAAATGTTCAATTTGGTTGAGTTTGAAGAGAATGTTGAGCATCAGTTTCCAATATCAGTAATTAAAT-AAGCCATTGTGACGGATCTAGATACCCATATTGTTAATTaactaaaagagaaataaaccttAAATTGGTTCAAGCCAAGTAGCATATTTTCTGATGTGTACATCAGAGTAGGAATAAAGAGTAGGAATATGTACTTTGGGAAGAACACACATATAATCATGTCTCTTCCTTGCTCAAAAAACTTagcttatttcttatttaaaatctaaatactTATTATGGCATTA-GCTGTACTGTAATTTGCCAGTTTTATCTCCCCCCTCGCCCCTGCTCCCTTATTGTGT-------ATTCTCATTAGAATATACAGcatttatatattctttcctGTTTTCACACTGAATCCTGATgttgatctttattttttaccTCATAGGCGTACTATTCTTCATGCATTAACCCCATACTGAAATTAAG-----------TCTTGTTGTTACCTCatct---------atgagaaataaaaata--------gtacttTCTTGAAGAGATTGGGTAGGAATCACTCT----TACGCCAAGCAGATAGTTCTTTGTGTTCCAGAAGAAAGGTCACATTCCGTGCCGTGGTACACTGGAAACTGAATCTagctcttgtttcctttttcagtttcatcttctgccatctttcctTGTGGCTCATGATGGCTTCTGCCTCCAGTCTTCACACATGTGTTTGGGATGCTGAAGGGTTTCTCTTATTCCAT

a score=56907
s chr3           143056320 1268 + 160039680 gaaactggctgcttacttgtttgtttttctttattttacccagtagtagcttaagggtcatggtatcttatttactgtacatctcaaggccagagatagtgttcaggacaaatatttattgaatggatATAGTTTGTTCACCCAAAACAACTATAAACAACTGGATGTGAGAGTTATACATA--CAAATTTATGTTTTGCTTACGTATCCTTGAGCTCATTAGAGGCACACTTATGTGAAGAGAGGCTACTGTACCACTTACAACACCAAGAGTGTAAGTTGGATGTCAAGGAAATTCTCATACAAAATGTAGGCACACATCCTTTCTACCTCTCCAGAGGAAGAGAAAAGCAGTTTCCTGCTGTTACAATTCTTATAATGATACGTTAATATCACAGTGGGTAACATGTCTTAAAAGAATCAGAAATTGATCCAAGGACACAGGAAAAAAATCTCTGCTGAAAATCATTTAAGTTTCTGTGCAGAAAAGCTTTTAAGGCATCACTTAAATGAAAAAGAATGTTTTTAAAGCCAAGCAAGTTCAAGAGATACATTCTCCATGAAAATGAAGAATAACAGCAG---AAGAATCATGCTTTATCACTGCATTTTAAAGAAAAGGAAACCTGCATTTCTTTTGCCCTTCCCATCTTTTCTTTACAAAGATAAAAATGCATGAATACTTAAGCTTGTGTCTTGGTGTTACTTAAGTTGCACAACATATTATTCTATTTAAAAATATCACTGTTGAGAAGTTGGTGTAGCAGTTTTATTTCAACCATGTCATCCGAAGTAAACTTTAAGTGCTCTGGCAGAAGGGTAGATTGAATGCAAAAGCTGGAAAGGAAAATGCAGGACATACAAAAGAATAAGC-AAGAGAAAAGACAGAGTACCACTTGCAGCTGAGGAATCCTATCAGATTTCTAGAAGATGAAAG-----AGGAATGTTAATGGGAATTTTCCCCCTCTCCATTAATTTGCAGAGATTTTGGCCCATGATACCCTGAAAGG--CTGCAGTAATGGGAGGGACTGATGTGCCAAGGAAATATCTAG---AACTTTAGCCCACAGTTAGCAGAT-TAGTGTA-----TCATATTCAACCTTAACTATTAGTTGTCCTGGAAGGGCAAATACCAGGGAAGGCAGTTATAAAAAAGTAGAAAATGTTTCCAAAGCCAAAT----AGAAGCATCTAAG-TGTTGTCATTGAAGAATTTCCACCCAGTGTGGAGATGAGTGAGTGAACATCAGG---AGATCTAAACACTGAAGTGCATCTTCAGATGCTG
s HiC_scaffold_1 129235128 1260 + 233722169 gaaatttgctgTTTACTTATTTGTATCTATTTATAG-ATTTAATAGTTACTTGAGAG-CATGATGTCTTATATACTGTGTATCTGTGGGCAAAATACAGTGATcagcacaaatatttattgaataaagatATGTCAGCCTTCTGAGAAAACTATAAACAACTGGATATGAgagttataaagaaataaatttgtgttttgcTTACATATCCTTGAGTTCATTAGAAGGCCACTTATGTGAAGAGATGATACTACAGCACTTATACTGCCAAGAGTATAAGTTGGATGTCAAGGAAATTTTTATGTAAG-TGTAGGCACGTATCCTTTTTACTTctccagaggaagaaaaaagcagTTTCCTGCTGTTACAATTCTTATAATAATACGTTAATATCACAGTGGGTAACATGTCTTAAAAGAATCAGAAATTGATCCAAGGACACAGG--AAAAATCTCTAGtgaaaatcattttaagttttgTACAGAGAAGCTTTTAAGATTTcacttaaatgaaaaagaatgtttttaaagcTATACAAGTTCAAGAGCTACCTtctacattaaaatgaaaaataacaacagaaaaagaaaagcactggattacatttttttga--aaaagaaaacatgcgagtatttttcccttcctattctgtttttacattgat-aaaatacttga----ctaaacttgtatttttctgttgtt-----------atataattttatatttaaaaatagcaacacTTAGAAATTGGTGCAGCTGTTTTATTTCAACTGTGTCACCCAAGGTAAACTTCAAGTGTTCTGGCAACATGGCAGACTGAAAACAAAggttggaaaagaaaatataggataTACAAAGGAACAAactaagagaaagagagaaatgccATATGTGCTTGGAGAATGTCAACGAGtttatggaaaatgaaagaatataagcctgttggt-agattttttttcatttttattaa-ttgaaGAGATATCAACCCAGGACACTCAGAGAGGGACTACAATAATGAAAAGAACTGATCTACCAGAAAAATCTCTAGAGAAACTTCAGCTCAAAGTTGACAGGTACAGTAAACTCATTCATATTTATCCTTAGCTAGTAGGTACACCAGAAGGACAGAACATAGGGAAGGAAATTATCACACAGTAGAAGA-------AAAATTAAGCTTTAAGAGAGATTTGTGATTTTATTATTGCA-AATTCTTATTAAGTGTTGAGATAAATGAGCAAAAAATGGACCTACATCTAGGCCATGA-----ATTTTCAGATAttg

a score=23549
s chr3           143065632 1174 + 160039680 AAGGTGGGATGTGAAAGTGCCATGCACGTCA------------CCAATTGGAAGTCAGCAATCATGTTGTAAGGCAGTCTGGGAATCCCATAAGGGGGCTCA-------------------------caacagtccaggcttagctccagttaatcatagcctcagtcttctaggtagcaggtgaagtatgt----gaacgtgggtcttcccacctcagtgaccttgctgcaagccatgc----tgaaccaaatagccaagagctgtccccca------cctgacccaagtatagcctcctgagtgg----aatcattgtcctt---ttaacacattataatatggagttatctg-------gcaatagatagccagagcaGCTAGACGACGTCAGGAGTCAGGATGTGACTGAACTGGGGGTAGGAGCGTGCAGAGAGCAGGCCCGAGTCCttgagactgcttttagcctttgctttccttgactagtctacatcactccggtttccgttgcttt-cctaatatcatctgcttatttttcattgttttgattgctcttccctaaatcccctctcaggtttttaagaccccaagctagacacattatgttaataaaggcttgattaaagctgagagtaATTAGAGGATTAAGTGTAATTCCTACATTCTATTATCTTATTTATAGAACTTGATGGCAGGTTCTAACTTTTAACAGCAAGTGCTAAATTGAAGAGTTAGACTGACAGTCCCTCTGACTTGAATATACTTTAACatttttttatttaaatagaatattacaatta-ttaataGCAAGTTTCAGAGAACAC-TTATAAATCAGTCTCTCCTCTTTGAAC-------TCTTCCTTTTCACT------CTGTGTACTTTATATCTTAAAGGT---------AGGAACTATTCATATAATTGACCAGCCTTCTTTCGTATCATTCTACCCACTAGAAGGACAACTA-CTTA---TATTGTTTATTATGTCCATTAGTGTTTTATAGTTATAGTATacacacacacacacacacacacacacacacacacacacaTATATATATATATCAATAAATGATATATCACTTGTTTTAAACATTC-TACAAGCGGACTTCTT--ATGTCTTTCTGAGTATCTA-TTTAtctctctcatctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatTCACACACACAC-TACACTTTCTCAGTCTTACCAGCTACA
s HiC_scaffold_1 129250704 1194 + 233722169 AGGATAGAATATAAAAAT-TCATGCACTTCCATCATAGAATGTTCACTTGGATCCTAGGTAACATGGTGGAAAGAAGTCCAAGAAATCCATAGAGTGAGGCATGAGAGAGGATCTGGGGATTGTGGCCCATAGTCCTGATACAACACCATTCAATGGTCAGTGTTGTCTTGCTTGTATATGGTTAGAAATGGTTAGAAAAGTGAATCTTTTGTCCTTGGTGAGCAAG-TGCAGGTGATGTCATATGGACCGAC------AAAGCTGTCTCTACTGAAGTCTTGACCAAACTACAGATTCGGGAGTGAGACAAATTATTATCATTGCCTTAATCTACTATACTTTGGAATGATTTGTTGCACAGCAATAAAAAACCAACACATTTAGCTTTAGT--GTAGTCTTGA-GTCACAGACATCAGGATAA--------ATAGAACAAACT-GTACCTtctcaacagattttatttttttctttcttttattactcTAAATTA-TCCAGTTCATATTGCTTTTCCTTATACCATctacttatttttcattgttttgattactCTTCCCTAAATCCCCTCTCAGGCTTT-AAGACCCCAAGCTAGACACATTATGTTAATACAGTCTTGATAAAAGCTGAGAGTAATTAGAGGATTAAGTATAATTCCTACATGCTATTATCTTATTTATAGAACTTGATGGCAGGCTCTAAATTTTAACAGCAAGT-----------GACTTAAACTGACATACTTTCTGACTTCACtgttccttaaaatt------tttaactaGAATATTGAAATTAGTCACTAGAAAGTTATAGAGCAGACATAACAAACCAGTGTCCTTTGTTTCAATTGCCCAGTTTCTCATTTCAATTCTCAACCTTTTACCATATTTGCTAcagattaaataataataaattat--acaCAATATACTAACCCCTTTCC------TTC------CTCAGAAAATTGCTATCTTAAATTTTTGTCTATCATTCccatgaatgttttat-tttatgaaacatgtAGATgccaaaaaata-----------atagtaaattataAATAGTTAATAATAAGTAGT------TATGTTTTAAACTTTCATTAAAATGGATTTTTGGAATGTCTTTC------TCtaccttatttttataatttgaatctATTCATTTTATCCCCTATAT-TATATGACTATAACTATAACCAAAAAAGTCTAC-CATTCATGAATATTCAGGTAATTTCTAGATCTTAACTGCAACA

a score=45336
s chr3           143071780 2383 + 160039680 TCTGGTTTCAT-CTTCATTGTTGAGGTTGTCTTCAGTGGCTAATTGGAATTTAGTCTATA-GGATGTTTTGAGTTTCTGGT-GGCTACCTGTTCTTCACTTGCATA-------------------GGCTGTTTCTCTTGTCTTGTCCCTTTCTTCTTATACACAATGTTTTCATTGCTGTTTGAAAGTTTA--TAGCACAGAGATGGATAAGGATGTGGGGATATGGACTAGATAAAACCTTGGCTCAAATCCACACAAAACTTCCTAAAACTTGTTTATACCAAGTGTTTGGATAGATTTTGGCACTGATCTGTCTCTTTAGATGACAGCTAGGT-CTGGCTTGGATCTTTGCATTCATCTTTTGATTA-----CGAGTAACATCTTGTTGTTTACATTTTAGGAGCTACTTTCTGACTTCAAACCTTCCGAGTGAAAAATGCGGAGGAGCAGGGAGGTCATGGC-------TTCATTCCAGAGTTCCTCCGTGGTGAAGAAATCTCAG---TTTTAAAAATGTCTTCACTTATGAGCCATTGGTCTCAGTTGTTGGCAGTAGGATTGCTTGTGATTGAAGGCTCAAAGTGCAAAAACCAGAAAGTAAT--GGGCACAAATATAGCCTGGCTTGATACATACTTCTGCAAATCCCAATGAAAAAGGAGTATTTCTAC-TGCTTACCTACTT---GTATTTCAAGTTCTTGAAATGACTAGAGTCATTGCTCAGATAACGCTGT------CAGTAAGGCTCTTTCACCCTCCTTGGTCTTCCCTCCATTCTCTTTCCCA---ACACTCATCTCAGTGCCCCGTGAGTATGTAGGAGATGGATGGGTCAAAAGTACTTAGTTTCTAGTACTTCATGAGTACTTAGCAGATCATTGTTATTTTTTGATGTAAGTATATGCATGTGGTATGTG-TACAGTACATGTGCTGAGTTTATGAGCAGTtatgtgca-catgtgtgctcaggcacagaggccagagcaggatgcgcagtgtcctgtgtgatcattcttgttctcactgtcttgatacaggctcgctcactgtacctggagttagctaagctggtacccagaaaaccccagcaattctcatgcccctaccttttgcctacactggagttctaggagcttttggccactcctggactttttggtggatgctcatgatatcaaaactcaggtcctcatgtttgcatagccaatggtcttattacagagtgatcttctctgtccAGTAAGTAATCAGTTCTTTTTTGTAATGAGATAAACACAATTTTTCTTGTCGTTTCCTATCACAAGGCAGAGAGCATTATAAAGGAGATCTCCATTTGATTCCTCCTTGTGGTTAGAGATTAGAGAAATGTCCTTAATAA-TGGACATGAGATTAAATTTTTAGTGGCTTGCCTATGAAAACAGTGGAACAAAGTG-----GAGGGGTTTGGTTC---------ACACACGATGAAAAGGAGCAGCAGACAACCTGAAGACTATATAAAAGGCTAA-------CTATTTAAATAACAAATAACACATAAAGATTTTTTTTCT-ACTTTTAAGGTCTGATTTTTCTAAGTTCCCACATAAAAATTCCGTTTTATAATGGGTAAGCTGCCTTTCTCAGCTGCGTACTGTCATTCCTAAACAACCCTAGAGCTAAAAATTTTAAGTGCTGTCACCCAGAATTGCTAAACAGAACTTACTCTTTAATTTGTCTGCCACTCTTTCTGTCACTTCCCTTGCACTTTTATGGTAAGGCATTCATTCAACTGTCATATCTCAAGT-CCTTTAAAATAGAATGCAAAAGCCCC-AATTCACTCTCACAATGGCCAGAAAGGTCACCTACAGTTGCTGGGAGCTCTTTGACCTAAAATTTTGGGGTAAACCCCGCTGACAAAGTATGAGTTGA-TAGTGTGTCAGTAAGCTTTCTTC--Atggggtgaaataattgaagtagttaacttaggaaaagtagaagtttattacagacatggctg---tggagggtctggggtgaagatca------cgtggacctttggcaaggtgatactgcatgattggggtcacatggtggggcaaaatcacagacttcatgaccag--agaagaaagacataacaggttgctaggagagaccc------------caaggctgcgctcc-agtgagctaaaggtctcctataggtccctaccttctatggcttctgtcac----cttctaggagcaccaccctggggaccaggcctttaagacatagattgaaa--------ccatGACAAGATGGAT--------GATCTAGATGAATGGT------TCTAAGGTCTGTCAGTAAGTGACAAAGTTTGGACAACGAAGAATAAAAGGATAGAGGTAGATT--GAAACCATCTGTCAATAAGTTTTGTTAAGATTCTACCGAACAAATGGTTTGCTTATAGT----------GCAACACCTCAAAAAAGCATATGAACAGCT--ATTTGAATTTTTTT
s HiC_scaffold_1 129260782 2110 + 233722169 tctaattttattcttcatcat-aaaattatcttaaattgATA-TTGAAATTTAATCTGCACTGTTGTACAGATTTTCTGACAGGCCATCTTGTCCCCATTTTCTCACCTCTCTGAATCATTGGAAGGCTGGTCATTTT--CTTTTCCCGTTGTTGTTTGAGTcaa-gtttttattattacttgtAAGTTTACATAGTACTG-GATGGATGAACTTTTTGAGATATGGACAAGGTAAAAATTTGGCTCAAACCTATGTAAAGCATTCTCAAACCTGTTTGTCATGAATGTTTGGATAAGCTTTTGGAATGTTGTATATCTTCAGA---CAAGTAGGTACTGGCCTGGA-CTTTAAACTTATCTTTTGATTATACTACAAGTAATCTCTTAGTA-----ACTGTAGGAGTTGCCTTGTGGCTTCAAATATCTGGAGCAGAAA--------GAGCAAAGAGGCCGTGGTAAGTGGATTTATATCAGAGTTTCTATGAAGTAAGGAAAACTCAggttcttttttaacttttttacttCTGAGCTATTCATCTCAATTGTTGGCAGCAGAATTATTCATGATTGAAGATTCTAAGTACAAAAATCAAAGAGTAATTTAGGCATGTACATGACCTAGTTTGGGACCTGCTTCAATAAGTATGAATGAAAAAGAGCTATTTCTACCTGCTCAACTACTTTTTGTCCCTCAAATTATTAGAATTACTATAGT----GCTTGGTAAAAGCTTTAAGTGATAGtgaaattttttcccttctttccttttcccctccttcctctcttccacTAACATTTATG--AGTGTTCATTT--TATGTCAGAGAGAGTTGAGTGA---------------------------AGTACTTAGCAGTTTCTAGT---------ATGTAA---TAAACACTCAGTAAGTGATATATTCCATAG--TGAG---ATAAACAAGTTTGGGCATCATTTGTTATCATACACA-----TATAGCA------------------------------------CCTTCCTTAA--------------------------------------------AGGAGACCT----AATATTGATGCCT------------------------------------------TCCTCAGGTCAGAAGTTGATGCATATGGTAGCAGAATTCA-----------TTGCTTAG-----------------------------------------------------------------------------------------------------------------------------------------------------AAAGATGACAACAGTAACCGTAACAAGTGGATGCCAAATCCAATTCATAG-GACATTTCTGTAGGAACGATGAAACAAAGCATGTCTGAAAGCCTTGATTCTAATGTTGGGCTAATGATGGAATGTAGCAACAGACAACTTGAAGATTGGATAAAAGGTTAATGGGTTACTATTTAAATAACA-----CATGTAAAGACTTTCCCCCCCACTTTTGAGAACTGCTTTTTCTAAGTTCACACACAAA--TTCCTTTTTATAATGGATAAGCTGCCTTTCTCAGCTGCATACTGTCATTCCTAAACAATCCTGCAGCTAAAAATTTTAAGTGCTGTCACCCAAAATTGCTAAACAGAACTTACTCTTTAATTTGTCTGTCACTCTTTCTGTCACTTCCCTTGCAC-TTTATGGTGAAGCATTGGTTCAACTGTCATATCTTGagtccctttaaaataaaa--aagaagcccCTATTTTATTCTTGTGAAGGCCGGAGAGGTCACCTACAGCTGTCTGGGGCTATTTGACCT-GAACTTAGAGGTGAATCTTGCTGAGAAAATACAAGTTAAGTAGTGTGTTAGTCAACCTTCTTTCAAGGTAGCAAAATTCTTGAGACAATGAATTta--------caaggtttatt------ttggctgtttTGTAAGTTCT-AGTCCAAGATCAATCAGCCCTGTTGCTTTGGCA----------GCATGGTGTGAGT-GCACAGGAGAGCAAAA------GCTTTGTGgttaggaagcaaagagaaagagaatgtggcT----GAGCTCCCATCATTCTCTTCAAGGGCATGATCCAAATGACCTAAGGATCTCCCCTAAAACCCCACCTCCTAAACACTCTGCTACCTATCTCCCAATAGGGCAATCCTGGGGGCTGAGCCTTTAGCACATGAATCTTAAGGGACACTCCACAGCTAG-TAAATCCTTATTCTTTCTAGATGAATGATCTCTCACTTAAGAGCCATCAA-AAGTAGCAAAGACAGGGAAGTTGAGAAGCAGATGGTGGCAGGAGACTTAAAAACAGATCATCTTCACACTTTATGGTGACTGTA---AGTAAATGACT---CTGTAGTGTCCTGCTCAGTAATGTCTCATAGAAGCAGGTAAGCAGCtgcatttgaatttcttt

a score=59433
s chr3           143077411 1762 + 160039680 TGACTTTTAAAATAAAACTCATCAATGAAGTAATAAAATAATAGAAGTTTGAGGACTGTGAAACATTTTTGACACTTCATCTACATGTTATTCCCTTCCCCCACCATAGGAGACAGGTTAAGTTTTAGAAATTTAAATAAGTTG-CTTctacaggtttctaacaaaggtatcagcagctggggaggacatgccagcctctgagaagttttatagtgtGC-----TATGAAGAAAACAGGAACAGAGATTTTGATCTTCTtactatggcctgagtgtgcccaccccaaagttttctatgtagag--ccttaattcttcagtgtggtagttacaaggctggggttctgtgtctaggttacggtatcag--atgtccctcatgaatggattcatgtctttctctcaggaataggttagttatt-------taaggaacttgcttccttctcctctctaggacaccctcccccttctttccaatatctttcatgctaagaggcagctcaaggcccttactgaatg-ctgttccttttgttggttttccaaactcctaatctgtgaatcacaatc----tcctttataaattacagtgttgggtattttgttaGGATCATTGAAAACAGACACGAGATGCTTCTCCTGTAGAAACTTA-TATAAACACCAGTTATCTCTGTCTGTCACTTGGCTCGTATTTGTCCTGGGATATG-----------------------------AACAAGAGAGGCGCACATATTTTTCTGACTGGCTTCCTTTCTAG------TTGTGAATTTTAGTTTAGGTTCATCTTAGGAAATTGTGCCTATACCTTAGAACTCTTTATTGATGAGAGGCTCTGCTTTAATATGTACTCAGTCATTCAGAACTCGTTGTCCAAGGTACTGTCTGAGCGCCAACAACAAGTTTTAATTTATAAACTAA-GTCTTCGTTTTATTCTTTAACCTTTTAGACTTGCGTGGTATGTTTATCAGGCACAATTCTGAAAGTTCTTATACAGGCGACATGTAGTATGGGCTTAATAGAGCACATTAATAAACTCACACTTAATAAGTGCACTCAAAGCTTCTCCCATCTGGATTTACTGGCACTAAAGGGAGACATTACAGAACTTTGGGAATTTGATCAAGGCGCCGGGTACTAATCTTAGATTACAAAACCATGGAATCTGA---CTTAACCATGGGAAAACAAAGCAACGAATGCCAGGCTTTTGGTAAAGAGCACGGCAGTGTGGATTAATAATTAATGTGCTGAATGTACTTTATAATAAACTCCACCCTAATGGATTTCTTTTGATAGCTGAATTGGCAGTGGT-TCCTCTCGTCACTCCATTGACTCAATTCTTCAACATTCTGTGCTAGATTTATTGGGTTAAACTACAATGGCCTGTTCTTATAGAACTATTTAAATTCATTTAGCAGGCATAATTGA-TTAAAGATATTGATAGAGATTCTAAAAAATTATATGGAAATTGACAATGATACAAAACAGAAATTATAAAGCAAGATCTTTAAGGGGAAAGTGGCACAATCTACTCTGGTGGTAAGCAA--------------------------------CAGCTAATGCTTCCCAT-GAAGATGATGTTTGAA------------ATTTATCATACGTAGACAACACAGATGAGA-AACCCAGTGAGCAAGTCTAAAAATAGCCACATGTTTTAGAAAT-GAGCCTCAAAAGTTGTGATTTGCATCAATTCTGAAGGCAGAAATTGGAAGTAGACATGAGAAGTAAACA----------TGGGAAAATATCCCA-TTTGTGGTGGTTTCCAGTCTAGTACTTAGGCACTTTATTTCAGAGATGGAATATAAAT
s HiC_scaffold_1 129263959 1822 + 233722169 TGAATTGTGaagtaaaatttat---------aatattgtatTAGAATTTTGGAGA-TATATAACATTTAAG-TACTCtatttctgatttattattttct-------tagtacaTGAATTAGGTTTTAAAACTGTTAACAGGGTGactttttctatcctttgatggAAAGACCAGTAGCAGGAGAGTATACGCATACCTCTAG--AGTCATATATTTTAGGCAAGTATGTAGGAGTTGGTACTAGTG---TTAGTCTTTTTGCTATAGTTTGAATGTATCT--CCCAAAAGTTCACATGTAGAAACCCTAATTTCTCAAATGCAGT-GTTGGGAGGTGGAGCTTAGGTGATTGGGTCA-----TCAGGGAAGAACCTCATGAGTGAAGGT---TTTTTCTCCTAGGAATGGGCTAGTTATTACGGGGGTGGGGGAGCTCCCTTTTTTGTCTCACTCATAGACtcactttttctcttctgctttccaTGACATCTAAAAGCAGTGTGAGGCACTCACCAGATGGCTGCCCCATCT-TGGACTTTCCAAACGCCTGAGCTGCTAGCCAAAATCCTTTTCCTCTATAGACTACAGTGTTAAGTGCTCTGTGAT-AGCAACCAAAATGGAT-TGAGGCACCTCTCATGTATAAATGTGCTGTAGAAGCCAGTGATCCCTGCAT----CTTGACTTGTATCTGCCCCTG-ACACGGGGCCTCATCCATGTCCCCTTCCCAACCCAATATGAGGAACCGATTACTTTTTCTGACTAGCTTCCTTTCTCTACTCTTCCATGAATTTTTGTTAAAACCTACTTTGGAAACTTGGACCTAAAC----------TTTATTGATGAGAGGTTCTGCTGGAATACTTAATTAATGAGCCAGAACTCTATGTCCAAAGTACTTTCTGAGTGCCAAca-tgtgttttaatttatatactaaagtcttcattttgttcttaaaCTCTTTGGCATTGCATGGTACATTTATCAAGTATGATTCTGAAAGTTGTTATATGGACAATGTGTAGTGTGGGCTTAATAGATAACATTAATAAACTCACACTTAATAACCACACTAAAAGCCACTTCCATCTGGATTTACTGGCAgtaaaaagagacattacagaactttgGGAATTTGATCAAGGCGCCGAATACTAATCTTAGATTACAAAATTGTGGAATATAACTGCTTAAACATGGGAAAACAAAGCAATCAGGAACAGGCTGTTTGTAAA-AGCTTTGCAATGTGGATTAATAATTAATGAGCTAAATGTACTTTATAATAAACTACATCATAATGGATTACTTTTGATAGCTAAATTGGCAGTGGTATCCCAACATGGCTTCATTGACTCAATTTTTCAATTTTGCTTGCTAGATTTATTGGGTTTCACTACAATGGAC--CTATTATAGACCTATTTTAACTTGCTTAGAAatcataattaatttaaaattattgatagagacttgcaaaagttatataaaaactggaaatgatgcagaa-agaaataatgaaacaaggTCTATGAAGAG-AAGTGGCATAATCTATTTTTGAGGTAAATGAGCAGCATtcagtagaaaaaaatttcaaagaatcagctaATGTTTTTCATGGAAGAGGATGTTGACATTGGTGCTGTATAGTTGCTCTATATAGATAATAAAGATGAAATTATCCAATGAAGTCATCGAAAATTAATCAAatcttttagaaataaagtataataaataataatttacgTCACCTCTGTAGTTATAAATTGCAAATAGACTTGAGAATTCAATGTCTAGAAGATTGAGAAAATATCCTGTTTTGTGAGGTTTTTGAGtatagtatt----ctatttttttcagaaattgaaTATAAAT

a score=31202
s chr3           143080007 1473 + 160039680 TGTCTTTGTTAAAAAAAAAATAAGTAAATCATATGAGAATCCCGCAGAATACATGGAGAATGGCAGCCCACATAGATTCCATAATAGCAAAGCTAGTTTGTCTTTCCCGATCTTGGCCTCAACCTTGCAGAGCTTGCCTTGGTTTATATTTGCACAGGGCACTCCCTCCACAGAAGAGG-----------GTCATTCTGGAGTTAAGGTGTGTGGTCACTGTGAAATATATCATTTGTCATTTGTTTTCAGAGTCTTTTAATCCCTATTCCTGGTTAATTATCACATCACACTCATATCAAGGTA---TACCTGTCACAAAGGGGGTTTGTTTTTAATGTTATGATGCTGTTCATTATTTTTAAAAGCTCATTTAAAACA---------------TTACTGGATTTTATGAGCATATTTACATTCGAAAAAACATACCACTAATGCCAGTGGTGACTTTTGAGGGAAGAATAAAGACTTGGCTATCTGTCAGTCACTAGGGGCCCTCTTCT----------CTCATGCACACTGTTTTACTTATCCGGAGAACAACCTTGGAAATGCGTGCACACCGCAGTTTACAGACAAAGCTCCTCTATGTTCTTCCCCGAAACAGCTGGGCATCCCCTATATTTCAGCTACTTCAAATACAGGAGTGACTTC-TAACACTG--GCCAGTGCGGG----------AGTAAA-----AATGTAAAGCGTGTAGATGCTACTGGAACTTAGGGTGTTTTGCTGTTAAT-----TAGAAAGGGACGCAGGTTAGAG--AGAGGTAGACAGAGGATGGAGGGGTTTCTGGATGAAA-------------------------------TAAGAAGAGGATGCTGGAGCGAGGCTTTGAAAGAC----------------GGTATCTGGGTAGGAAGCACCCTGAGACAGAATTTCTGGTGCATATAAAGATCATACGGTGGAAACAGGGCTCTTAGGAAATACCCTGTGGCTGGGAGAGTTGGGGCAGAGTAAAGAGAGAGTAAAACCA----ATTgccacaggg-tttttagctc-ccctggaagggaagcagagagacactgtagggctttgtgcagagg-----agcgccaca---atctcacttcaccaacctgct-ttgaggtgaaacgtgaaggggcaa-ggttagctgggagctcagttagaaggcttaggcatcagtccagaagaggagtggatgatggtggctcagactgaggaaatgtgagcagagcaagaggagcaaaaaaaaaaaaaaaaaaaaaaaaaagaacatattttgaattcagaaccaa--------gagcattaagtctgaaaagaaaggcacataaaaaggaggaccacgagaggttgtttgtttggttttgctgttttcggatgtatggatgatttgaaatatgccaccccattgc-cataaacttaatttaggagagggt---cagagatcaggcttggggaaggtagagaggtgtgatgtgttcta----------------------tgtctatagctgtatgtatggcaactattgatgtagacagactttgaatctgaagcttgggagacaaatctgaagtagatctgtccctttgacaa
s HiC_scaffold_1 129265754 1536 + 233722169 tatttttttcagaaattgaaTA--TAAATCCCACTAAAATCCCTCAGAACACATGGAGAATGGCAAACCAAATAGTCTATTTCTTAGGAAAGTGAATTTATATTTCC-AATCTGTGCTTCAACCTTAAGAAAACTGcattcatttgtattttcatagGGCATTCCATTCTCAGAAGAGGAGTATTCCAGGGTCATTCTGGAGTTAAGGCATATGGTCACTAGAAACTGTGACATTTATCATTTGTTT-CAACATCCTTTAATCCCTACTCCCAACTAATAATAATCTCACAA-CATATAGAGCTACTTTACGTGCCACCAAGAGT-TTTGTTTCTGATATTATGATGCCATTCACTATTTT-AAATGCTCATAGAAAGCAATCTATTTTCATACTgtactgtattttat------atttacac-aGAAAAAGTATACCATTGCTAACAGTGGTGATTTCTGAGGAAAGAATAAAGACCTGGGTATTAATCA-----CAGGAACTTTCTCTTATGAAGCCTTTTCACACATGCTATTTCATTTATCCTTCAAACAACCTTGAGAACACTTGGGAACTGCAGTTCATGCAGGAAAATCCTTTCCATTCCTCCCACAGATAGTTGAGAGTCCATTATATTTCAGTTACGTCAGACATATCAATGGCCTCATAAAGCTGAAACTGTTGTGGGGAATACAGGCAATAAATAGTCGATGTAAAATAAGTGGATTATGTAGGAGGTTAGAAAG------TGTTAATTACTATAGAAAAAGATGTAGaacagaggaaggggaagaaagaggg-GGCAACGTTGCTGGATGAGATTTTAAATAGAATGTTCAGTCTCTGTTTCACTGAGAAGGTGACTTTTGAGTAAAGCTGTGTAGGAAAGGGGAAAGCCACGAGGATTCCTGAGTGGAGAGCATTCTGAGATGAG------GGAACAGTGATGGATCATAAGGTCAAAGTGTGGCTGGCAGGAAATGCAAGGTGACTGGTGGAGGAACAGAACAGGAAAGAGATAGACAATGTAGGGCATTGTAAGTGAGCTTTTCAGCTCTTCCTAGAAGGGAAATGGGGAGCCGCTGCAGGACTCTGAGCAGAGAATGACAGTGTTGCATGGATATTAAGGTGTCAACCTACTGTTGTGTTGA---GTTAAAAGGCAAGGGGTGGCAGGAAGCCCAGTTGGGAAGCCAAGGCGATGATCCAGGAGA---------------AGCCCAGATCAAGGAAAAGGCAGTGGACAGAGTGG-------------GAAATGAAAAACTGCCGCACACATTTTGAATACAAAGTCAAGATTTCCCGAGCCCTTGGGTTAAGGTACAATACGAATGTTGAAACACATCTCTGAGGGTTTTTTACCtga-------gcacctgggaggctgga---------------------gTTGCTCATAAAGTGAAGAGAGGGAAGGCTGCAGGGAGAACAGATATAGGGGA-----AGAGAAGTCAGGGGTTCTGAGGTAGATTCATAAACCTGGATTGTTTACAGATCTATCTTGGTTAACTGCTG-TGTGGTAAGACACC-AACCTGGAGTTTGGGAGGAAAGTCAGGAGTAGATATGTTCATTTGGTAA

a score=91544
s chr3           143083033 2466 + 160039680 ATGGCACAGTTGCAAAATAGGCTCACGAGGTCTGATGCTTGAAATCAAACCAAGAAAAAAAACCACAACTATTTTATTAGTACTATT-AATACTATTTTAATGCtattaaattaattaaaaattaaatCATAAGAGAGCAGTGAGGAATAACAGGAAGAAGACAGGGTGTGTCTGGTGGTACAGCCTTCATATTGAAAGTTGTGAAAGCCTTTTC--AAATTGGGAAAAA---GAGGATAACTGGGTATGTAAGATACCGAGGAAAATGCTAGAGAGCAGGCAGCTGGCTGTGGCTGCCCTGCCTCTCGAATACAGAACAGGTCATGGCTAATGAGTAATGACTAGCTGCTTTCTATGTACTGTGAGACCAA-AAGATGAAGAGGCTGCAGGGAAGGGTTTgcacacatggaggtcagagaac----------atttca------------------------ggttatttctgttcttccaccatgtgagtcctggggctcACC---TGTGGAACC--------------------ATCTCGCTGGCCCCCAAGGGTTCTCTTTTATGACCAGTGAATGAGATGTCACCTGCAGTTAACCAGGAAACAGGCCTTCCT----TTTTTTTTTTAGCTCCTT-----------------------TCCACTAAGAAAGG-----------------TGCTAAACTCTTGACAT---------GTCTCTGCTCTC-TGAAGTTTGCTCTAGTTGGAAAAATAAATACT--AAGGAA-ATGAACATATCTAATTTGCCGTTTC--------TCGGCACACAGGAAGAGAGGTACCAGTGTGAACTGAGGGAAGGGTGACACTTGAGACCTGGAGT---------GTTCTCCGAGGA--AGGCATCTTCTGGCTGACGTCTCCTGAGAACCTTGTGATTCGGCGTCT--CTTAGAGACTCCT--TAGTTATTCTTCCTCTGCTAGGTCTAGAGAAGTCTC---TTCAGTTCCAACCTTCT--------GAACTCCCA--AGTGGAGAAAGCTTTAGGCTGGTTAATGACAACTTATAAAGATAACTAATAGCTGTGCCCGTTATTAGTCAACTAATAAAATATGCCTGATTTACTTGTAGGCACCATCTTTAATCAGCATTGATTCGCTGCTGATTTAGTGCACAGTATGCCTGGCACTAAGGCCTTGGCATTTTCTAGTGCAGGCTTAATAGGAAAAGAATCATTTCCTAAATAAAACGCTCATAAACGATTTGCGTGTTCAACTGTAGGGGGAGTGGATATTCATAGCA-GAAAAACCCCACTTGAATAAAGTGAATCTAATGGTTACTAGGGATTTGAAAAACTTAGAAGTAGCTT------ATAAATATCAGTATATTACTAGGATTGCAAATTACTCTGT--TATTAAATAATAAAAG-TCTCAACTTTTACCACAATAAGGTTCTGAGTGCTCAATATTCTCCTGCCACTTAACTAGAACACATTTTTTTTCCTAGATACAAATAGATGTATTAATTTCCATAAAACGGTTATCTTTTTACAGTATATTTAGTTCAGATCCAGTTTCTATTTCCACTAAAATAATGGCCTGTGATACATAGAGTCTATTTTATATGACTAATTAGAATAGTGTATGGGAAAAA-TAGGTTTGCAGGTAACACTGAAATTAAATATGTTAATCTGTACCTCACTGTGCACATTTTATATGAGCTTTAATTTGCCAAATAAATTATAGTTCTATGTTTATACGGTGCCCTTGGAAGAGTGTCCTATTTTTGAGGACTAATACCACGCAGGAAACAAATGTACAGGGCTTTTAGCTATAGGCTACACTTGCATAAATTAAGGCATGACCTCTTGCCTGAGAAGTAGAACCACAGCATCTCAGCTTTCTTACACACTCTGAATTGTTAACATGACTATTTTTTTTACTGTGGTTACTAATATTAAGATAATAAATAATATTTAGTTTCAATATCGCACCCTTCAGCCAGGGCGTAAATTCATTTTGAATGCTGTGTTGAATTAATGTACAATAAGCATACTGCAGTTTGCTATCAGGAAATCTTGGTGAAATGCAGGGAGTAGGTTCTTTGCCTGTGCATTAGCTCAGGCAGTCTTGCTCTGTTTAACTTTAGCTATTTACCAAATTGCTCTACTGACAGTCTTCCTTATTTTAATGGGATTGTTTTTAAGGTTAACAATAAATGGTATGGTATAGTACCTGAAGTCGGTTAC--AGGGCTGATGTAGGAATAGAGGGCCCT------------TTCCACCATTAGCCACTTAAGGGTCAGACCAGTCAGCTATCTCATTGAACAGATTGTGAAG------------CAGGGGCTTGCCAAGCCATTGTGTGGCCCAAGGGCTATTGTGAGTCTCAGGAGGGAATAGAGCA-AGAGGATTTGCCAAAGAAAATGCTGTTGCTGATGGGAGCAGAATCCCACCTTAGTGACAGCAGTACCACCCATGTCTGAGACCGATGACAAATACATTCAAAAGGTTTCATATTGTTGCCTTATTGGTTAGTTTCTTTCTAT---ACCTATTTAAATTAAAACTTATAGAGATTTAGACTTAAAAGC-----------------------AGAAAGAATATGCAGAACTCTCCCATAGCACTCAGGCT
s HiC_scaffold_1 129268067 2539 + 233722169 ATGGGAAAGTTGCAAAACAGGTTGATGAAACATGAT---TTAAATCAAAATAAGTTGAA--------------TTATAAGGAGTATTTAATATTGtggtcattttatttaa--aatgaaaag---aatcacaAAAGGCTGGAGAGGAAAAGTGGAAATCAGGTATGGAATGCCTGATGGTATAACTGTCATATTGAAAGTTGTGAATGCCTTTTTTtaagttggaaaaaaaaagaaggcaactAGGCATGTAAAATAATGAGTAAAATAGTAAAGACCAGGTGGCTGGTCCTGTTTGTCCTGTGTTGTAATGCTAGAACAGGTCACAGTTAATGAGTGGTGACAAGCTGTTTTCTCTCTGTTGTGAGTCCAATAAAAGGAAAGAGCTCCTATGAAGGATTTA-----GGAGAGATAAGAGGAAGAATTTTTTGATGTCACAATGTGTACAATGGATTTTGTGGGGTTGCTTTTGT-CAGCCAGGATGTGAGCT---GTCCTCACTAAATGTGAAATCTGCTGATGCCTTGGTCTTGGAcctctcagtctcccagaggct--------------gtgagaaatatatt-tctgttgtttataagctatCTA--CTTTATGATATTTTTGTTATAGCAACCTGAACAGACTAGAAtacccattcattcattaaaaaatgataatattgaGCTACTCTTCCAAATGTTGTACATCAAATGGTGGTCTCTGCCCTTATGCAGTTTAATCtagt---aaaaaaaaaccctgtaagaAACAAGGACATA---AATTTGCTTTGTCCTATGAAATTAACAAACAAGGTAGGGAAGAATAGGTTGGGCTAGGACAGGGGAGCCATCTGAGATCAGAGGGTCAGCAAAAGTTTTTTGGAGAGTAGATACCTTTCAACTGAGATCTc---agaacaaaaacttttaaagtctGACTTATAGATTACTCCTAGTCACTTCCCCTGTGCTAGGTTAAGTG----CTTAAATTTAATTCTggccttttcaaaaaaaaaatctctatcagTGGTAAAGGCTTTACGTCACTTTATGATAACTTTTAGGAAGTCTTGAAATCC-TGCC------------ACTGAAGTTATAGCTTCAACTTATTTACAGGCATGATCTTTCATCAACATCTATTTGAAActattttaatgcaaaataaacTTAGTTCTTATGGCATTATAATTCCTAGAACAGGCTTAATAGGAAAAGAATCATTTGCtaaataaaatgttcataaaCAATTTGCATATTCAACTGTAGGGGGAGTGAATATTCCTAACAAGAAAAATTCCACT-GCATAAAGTGAATCTAATGG--------GATCTGGAAA-CTAAGGaatatttccaaaacaaaaatattggtGTATTACCAAGATTGCAAATTATTCTGTGctattaaatcataaaaaatcTAAACTTTTACTGCAATCAGGTTTTGAATGCTCAACATTCTCATGCCATTTAA------------------------------------------TTTCCATAAAAGTGCTATCTTTTTACAGTATACTTAATTCAGATCCAGGTTCTATTTCCACTAAAATAATTGCTTATAATACACAGGCTCAATTTTATATGACTAATTAGAATGGTGTATGGGAAAAAATAGGTTTGCAGgtaatattgaaattaaatatgtTAATCTGTACCTCAGTGTGCACATTTTATATGAGCTTTAATTTGCCAAATAAATTATACTTCTGTGTTTATAAGGTGCCCTTGAAAGAGTGTCCTATTTTTGAGCACTAATACCATG-GGGAAACAAATATACAGAGCTTTTAGCTATAGGCTACACTTGCATAAATTAAGCCAAGAGCAGTTGGTTGGTAAGTAGAGCTATAGTATCCTTAGCGTTTTAAACACTCTGAATTgttaacatga---ttttttttactaTAGTTACTAATATtaagataataaataatatttagttTCAATATCGTACCCTTCAGCCAGGGCATAAATTCATTTTGAATGCTGTGTTGAATTAATGTACAATAAATACACTGCAGTTTGCTATCAGGAATTCTCGATGAAATGCAGGAAGTCAGTTCTTTGCTTATGCATTAGCACTGCCAGTCTTGCTCTGTTTAATTTTAGCTATTTATAAAATTGCTTTACTGACAGCCCTCTTTATTTTAATGTGATTG-TTTTAAGGTTAACCA-AAATGGTATAGTGTGTTTCCTGAAA-AAGTTGCTAAGTGCTGATGTAGGAATATGGGTCCCTACCAAAAATTCCTTTCACCATTAGCCACCTGC-AATCAGGACA-CCAGCTGTCTAATTGGGTAAACTGTGGCGTTCCCCGTGGGACAGGGCCTTGCAAAGTCATTGTGTGTACCAGGAGCTGTTGAGTGTCTCAGAAGGAAGTGGACCACAGAGGACTTGTAGAGGAAAACAATGTTGCTGGTAGAAGTAGAAGTGCA-------------ATTGCCACTTATGTCTGAGACAAATGACATCTAGATAAAAAATGTTCTGTATTATTGCTCAATAGGTTAGTTTCTTTGCatgacatttatttaaataacgTCTCATGGAAGTCAGGGTTTTAAAGTGGTTCTAAGGTGTTGAATACTAAAGGAGGAATACAGTGAATTTCCCTATAGGATTCAGATT

a score=19868
s chr3           143087380 551 + 160039680 ATTTTAAAGTCTGTTTAAAAAATTTAG-AATGCCTATAATTATAAAACTATGTCTGCTGTTATAAAACTTAACAACAAAGAACTTTTTGCCATTTTTACTATAGAAGCatttaatttcaaataatattttaaaaattGTGAGTTTGAGCTGTGAATGAATGGACTACTAATTAGTATAAGAGAGATATAAAATGGGGAAATCATTTTAGCAAGT---TCTACTTAGGGAAGCATTATTACAACATGAGAATCCATTTTTAAATCCACTTGCTAAATTCAGGCATACTCCCT-TTCGTAACTGACTGATTTAGGAAAACTATATATTTAGGGATCATCACTAAAATTCCTATCAAGAAAAAAATAAATCTGTGTTCACTCCATGTGAAATAGTGCATTATGATTTTTTTCCTCCTATAATTCCTGAGTTTGGTCCTGTC-AATAAGGGAGATATATAACCAGAATCTGCAACTATTTTCTCTACTGCAGATAAAATGCTCCTTCCTAGGGCCACCCTGAAAACGAGCCAGATTCTTTGGGCAGTCTGGTTGGAAGGCT
s HiC_scaffold_1 129278784 510 + 233722169 attttaaaatctgttttaaaaatttagcaatgCTTatgttcagaaaaatatttcagctaTTATA---CTTAATAGTGAAGGattgttcattattttc-ttatagagaaatttggttttaaaaaagacttttaaaattgtaagttTCAATTGAAGATGAATGGACTACTAGCTAGTAGAAGGCAACATAAAAATGGTAGAACTATTTTAACAAGCACCTCTACTTATGAAAGGGTTATTATAATCATGGAATCCATTTTTAAACTCGCCTACTAAATTCAGACATATTTCCTATTCATAACTAACTAATTTaggaaaattacatattttatgggTATTACCACCATTTCcatcagagaagaaataaatgtagGTTCACTCCTTATGAAAAAGTGCAGC-TGTCGTTTTTCC-----TAATTTTTGAGCCTGGTCCTTTCAAAGGAGGAAAATATGtaatcaaa------------------------aagcaaaatgttaTTCCTTA--------CTGGAAGCT-----GAGTCTTCAGGAAGCATGGTTGGAAGATT

a score=172874
s chr3           143088795 5521 + 160039680 [encoded data, 5970 characters]
s HiC_scaffold_1 129279380 5518 + 233722169 [encoded data, 5970 characters]

a score=16622
s chr3           143095313 935 + 160039680 TGAGTACACAACAGACCAGCACATGGTTCTTAAAATAAAATCTCAGACTACCAAAGGAGAATTAGAG----CAGTCTCTTCATCTAGAGAAACAAGGAGAAATTGCTGATAATCTTGCAAACAAAA--------GTGCATGTAAAATGCAGG---------CGTACATTTA------------GTAACTGGACTACTAAGTCTCCTGAGAAGCTTTGGACATGTTCAGGCCACTTGATACAGTCACAAGGATGTTACCTCTTTAGCCAAGAAAGGTGTCCTGATCCATGGAGGAGGGAAAATCATTTGGTGTTTA-ATTTTGCAAAAGTGCTAAA-CAGGATTGAAGGTGAGATGATGTTCCCACCCCCCTTAGTTTGTGTGACAGAGACATTTGGGCAATTTGGAAGTCCTACCTGAACCGGTTGTTACTGG-TTCTTTATCAGTCCTCATATCTCCTCTTTTTCTTATTG-GAAAAACATGAGTTTATCATGTTTATCAGGACAGATGCA------------------CACCTTTCAGGT--------------------TCTTCTGGCTAAGGTCAGATGATCCACTTTGGTTCATAATTTGTATGTAGAACTGTACTGATTAAAGCCTTGAAC-AAAGCAATATTTTCCTATCAAAAGGGACAAACTGATcacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacCCCTTTG------CATCTGCTTAGGATGCAGAAATAAACCACACATGGATAAAGCAGCCATCTTGTGACCACAGAATAAAAATCCCCACATTAAGGATGACAGACAGGAATGGGAGAGGGACATGAATCACTGAGGGATCCGTGGGGGTC----CGTGACATTTGCTGTGTCCTTTCTGTCTCCAAGAGACAACCAG-----------------------TTTTAGTGGAGTTTCTTGACATAGGTGCTAGTGATA-----AGTCTGTTACACAGATTTTGGAGAGTATTGTCT-TGAAGATATAGATTCC
s HiC_scaffold_1 129285406 956 + 233722169 TGTGTACATCATAAATCTGTGCCTAATTTGTAAAAC-----------CTCCAAAGGTTGTATTATATATGCCAGCTTCCTAACCTAGAGTACTATGAAGAAAGTGTTGACAGTTTTGCAAACAAAGCTATCCATATGTATGTATTATACAAGATCTATATCTATATAGTTATCAAAATATTGTGTGATTGTGTGATTGGCTCTCTTGACGAGCCTTTTGAAAGGTCAGTCCACCT--TTCATTTACAAGAACGTTACATCTTTACCCAAGAGACATGTACCAAGATATGGAGACAGGAATATTATTTGATGTCTGTATCCTACTGCAGTGCTGCATTAGAGTGGAATGCAAG-----GTTATTGCCCGCATTAGTTTGTGTGTTAG-GATGCTCTTGAGAACTGGAAGCGCCAACTGCA----TAATCACtgatttcttttccagtactCATGTCTTCTTTGTTCCTTACCATGTAAACCCTGGATTTGT--------TTGGGACAGACATACTTCCAGTTAAAATTTCTCACCGTtcagatgtttttctttctttctttcatattttggatAAGGTTATATTAT---GTCTGA---GTGATTTGTATGGAGGACTATACTGGATGAGACCCTGTGCAAAAGTAATATTCtcctagaaaaaaggaaaaa---atcacat-------------------------cACACATGcaaatgcatgcacacaca---------tcttttgttcttctttctgtttAGAATGCAGAAAAAGA--ACGCAGGGAGTAAGCACCTATCTTGTGATCATTAGGTAAAAGACCATATGCTAAGGAT----GATAGGAAAGAGAGA---ACTTGGGTCTGTGATGTAATGGTGGGGTTTGGAAAGTAATCCTGGCT---TCCTTTCT------AAGAGAAAAACAGTCATCTAATATTTGTTTACACCATTTGAGTTAAGGCTTCTGTTACAG--ACAAATGATGACAATAGTCTGATGCACAGGTTTGTTAGAGTGTTGTTTCTGAAGATATGGGTTCC

a score=227899
s chr3           143097820 7029 + 160039680 [encoded data, 7657 characters]
s HiC_scaffold_1 129287084 7227 + 233722169 [encoded data, 7657 characters]

a score=5570
s chr3           143104960 181 + 160039680 ACATTCCCTCAGTGCCTCTCTCCTCAGAAACTCAGTCACTGTCTTCCCAGGCTTGACCAGTACACGTTTTCTGCTTCATTTAGCAAGGTAATAAACCCAGATCAGTCTACTGGGTCTGTTTGCCCTCATGTTTGCATCTCTTGGAAGTTCATTTTGAATCAACTGTCCCTCTTGCTGTGCC
s HiC_scaffold_1 129294820 175 + 233722169 ACATGTCTTCACTGTCTTCCCCTTAAGGAATTTAGCAGTTGTCTTAACGGATTTGAAGAGTGTGTGTTTTCTGTCTCATTTATCAAATTTATAA--CCACATTGGCTCATTGagtttttt----cttgtctttgcaTCTCTTACATATTCCTCTTAAAAGTACTGATTTTCTTGATCTGCC

a score=18186
s chr3           143106552 1013 + 160039680 CATGAATTTGATTCTGCTCTTCGCTGTCATCAGTTAATGGTTTTCAAATAAACAGGGATCTCATACATAAGAAAATAAAAATTATCCTAA-CTTGATTTCCTTTTGGGCACGGAAAGAGTGTTGTACAAGAGCTAATTTTGATTAAGTAAATAACAACAGGGAACCCGAATGTACTTACACTAGACTCCCACACAAAACTGAGGCAGA-CTTGTAAAGAAGAAAAAGTGagccctgtggggaagctcagacctctaatcccagcactcagggggccaaggcaggaggatcaccgaaagtcggagtccagcccagactg-gatagtgagtcctaggtcagcctgtgctacggatggaaactccatgtcaaaataacaaTATAAGACAGAGATGAGCGGAAGAGACTAAACTAGAGAA-----------TGTAGTCCAAAAGCAGGCAGGAGAAGAATAGGCAGAGAAGCCTTGGGGAGGGAGGGCCATACTAGGAGAGGC-----AAGCTCGGGGCTCATGGCTTACCTATCTATCCTCAGGAATC-ATTTCTGCAGTGGTTCTCACAGCGCTGATACCACATCATGGTTCCTCAGAATCCTCATTAACCACTGTTTATAGCTGTCTAAGCACTGCTTGCCTTTGGATTTCCAAGGCCTTGGTTCCTAATAGGATAGATAATCATAGCAGCCCATCACAGGGGAATAATTATTCACAGGGAACATTATCTCCAGCATGGATCTG---------------------------GCCTTAAGAACTAAGAGGTTTATAGAAATTGCTCCCGTTCAGTAGGGTGATTTGATTTTTTTTCTCCTCTATCATTTCACTGTGCCTCTGATTAGCTAAACAACCCCCTTTCGTTCACTGGGTTGCTCTTTAGAAATAATCCATGCTGCGTGGTGTGGATTAACCAGGAAAACCGCTCCTAAGCCACAAGGGCAGCTGCTCTGGATTCTAGCACAGAAAACC-CACAGGAAGATGTGTGGCTGTAGATGCCC--TGCAGATGTACTGAAGGCAGGttattagattttaattta
s HiC_scaffold_1 129298180  931 + 233722169 CATGAATTTTATTCCACCCTTCCCTATCAGTAACTaatgaatttcaaataaacaggtatt------ataggaaaataacacccattttaaatttgattttcttttggacAC----AGAGTGTTATGAAAGAGTTAACTTT---------AATAACATCAGG-AGCCCAAAGGTGCTCACA-GAAACTGCCATGCAAAATTGTGACAGGTCTTGAGATGGTGTAGTGTTAAGCTCTTTGGAAA----------------------------TGAGgcagggaaagagg------gaaagagagagaggagagaagagagagacaatgGGAGAtaggaga---------agggaggaagaagggatgagaaaa-agcaaagcagagta-agtagggagaaagaaaataaactggaGAAATGGACATAATGGGAGaatgaaggaag--aggaaaaggagaggtaGGGAAA------AGAGGAAGGATCATGCAGAGAAAAGAGACTGAAGCTACGAAACCATG-----CTTTTCCATACTTAGGGACCCATTTCTGCAGTAGGTTTCACGGTGTGCTCATCTTATCATATTTCC------------------ATTGTGTATAGCTGTTTAACTGCTGTTTACCTTTG-ATTTTCAAGGGCTTGGTTTCTAATAGGGTAGACAATGACAGTAGCCCATCACAGGGAAAGAATTTCCCTCTTGCCTTATCATCTCTGGCATGTACCTGTGCCCTGAGTAAAGCATCTCTGTCCTTACCTTAAGCAGTGGAAGGCTAATGGGGACTGCCTTCGTTCAGTAGGATGACTGG--TGTCTTCCTCCT-----AAGACGCTGTGGTTCT-----------TCACTCCTTGCCAAGCAGATGTTTGCTCT---GACATAGTGCAT-TGGTGTGGTA-GGACCTTCCAGGGAAAGCTGTTCTATAATTCCAGAGCAGCAGCTCAGGGCTTCAGTGGAGAAAACTACGAAGGAAAAGG----------GATGCTTTGTGTGAAGGTATGTATGGGAGGTCATT-Ggttttggttta

a score=118190
s chr3           143107923 2908 + 160039680 AGCAAGCTATAATGGGAACGAGGAGGGAAAATAACGCTGAGACAGTCTGAACTTTTTG---TTAGAGTTCATGAATTTTTAGGAGCTGTC-----------GAGGC----TTTTAATGCTGCTTTGAAATGGAGAACGGAAGGAAGCATGGAGAGTTTCCTGTTTGTTCTGCTCGGTTTCAGTTCCATGAAGAGGTTTCTGCTTTGGGGACCTTCTCCCACCACAGCTTGCGGTTCTGTTTTAGTCAGCTTCTGAATGTCGATAACCAAAGATGTTTACTGTCCTTCCATGGAATGAAAAG----AAGGAACTCTCCTGTTTATTCCTCAGGTAAGAGGGAGGGCTGTCAGGAT----CTTTTCTCTCTCTTTTT-----AAAAGTCGTCCCTCTTATTTAGCACTGTCCTTCATAATACAAATTGCAAACAAGGCAAAGTGCCAATGCTGCAA-GTAATTTCAATTAAAATTCCCCGGGCTTTTCAGAGGCGACGAACGAGTCAGCCTCAATGCATTGTCCTTGAGTCTGTGCACAGCTTACCTGGAAAGCTTCAGAGAGGGACAAGTAATTTTAGTGTCACCTATCCCCACTCTCCACC-----CCTGACTGCCCCAAGCCATAAATAAAGCAATGGCTGCCCTCTCCACAGAAAAGGAGGCTCAGTGATCATTTGTCTGGAAAAGCTGGTAATGGACTATTAAATAGTTGTTTGTGAAATCATCACACACGACCGTGTTTACTTGTCTCTGCCGAAGTATTGCTGTTTACCCAGTTCTGGATAAAGAGCAGATCGTTTGACAAGGCCCCAGAGTAAATAGCATCTCTCCCAATATTTCCCTTCTGTGTCTGGTCCAGGCCTCTGCCTGTTG---TGGAATGAAATAGG----GTGGGGCAAGGGGAGGGGTGGGA----------------GGACACTAGG-------CATGAGTGGATGAATCCCATGCATCAAAAACTGGCATAGCC------AAGGCTCACTG----CTGTGTCCTAGGGCATCTCTCA-AGCCTCTTGCTATGAGATTCAGCAAAAACACAACTGTAATATTCCAGTTTATGTTATGGCTGTTGATAAACTCAAGGATTGCTTAGAAGGAGTGACGTGGAACTGACATCTATCACTGACTTGT-----TAAGTAATACTGAACAGATCTAGAATATTTAGGTATGTACCAGACACTGAACACAAGGCCTGAGTCTTCTTATTC-----CGTAGAAATGACAAGGGACTGTACTATTATCATCAGTTAGAGGTGCCAGAGGAAGACATGCTAGGTTAAGCTATGTAGCAAGTCTT---ATATTTGGTAAGAGAGGGCAGTGCGGTTTGAATTCAGATTCTCCAGCTGCTTAGTCTGTGTGATTATCAGAGTCTTCTCAACATAGACCAGCACCCACAGAAAAACAAGCAGGGGACAATTCAACCTGCTTGTGGGGATGGAGGGAGGGCTGTCCAGCAAA----GATGGCCGACTGT-GGCAGAGTGTGCACACGGAGAGG-CTAAGTAGGGGGAGTATGG-CAGAATAAGCTCCAGCCAATGGCTAGGAGTTGGTTGGGGAGAG-CTAATGCAAGTTAATACACTGCAAGTGGAA---CTAGGGAACTAGA-GATCATTTTACAGATTT--CTGTAGATAACCACAGAAGATTTTTTTTTTAATTGGTCATCTGTTCCCTGACATTGCAGGTACTCTACCCTCTGT-----GCTGTCAACTGCATAGCTTGTGTGTTGTTCTGTGTCCATGAGGCCTTGTGCTCTGCACAGACATTTTAACTGCCTTTGGTAGCAGAGGCAGTTGAGAAGCAGAAGCTGGTGGCTGGGGACGGCTCCCACTCCTTTGCTGGCTCTGAGTTCAGCAGTCTTTTCTGCACTCTCCAAGGAGCTTCCTGCGTATTGTCTGAGAATGTCTTCCAGGGCACACTCTCCTTCTCACG---GGACCCCTCTTCATGCCTTCTCTTTCTCCTCATTGTAGGCCGCTTCCATTTCTAGGAAATGGTACATGCTACACACTTACTGCTCCCAGTTCAGTCTGATTTGGGGTTCTGTAATTCATTGTTATGTGGGAAGTGCCTTCAGTGAAACACAACAAGCTGTGGAA--TATAATTCTCCCTTAATGTATATTTACTAAGTGTGTTTATTATTCATCAGGATGTGCATTTTAAAACGGGAGTCTAGATTCCCTCACTTTTAATCCCAAACAAATGTTAAAAGATTTATTTTTATAATAATCCTGGAACGGGAGCTAAGTAAGCCTCCCTGAACACAGCTTGCCAAGTGGTGGATGTTAGCACTATATATCCATGCTGGATGCTCAATCTGCAGTTGCTTGTCGTCCCTTACTGTTTCTACTGCTGATGTACAGAAGCGTACAAACACACCAGGGCTCGTCAACGGTTGCAATTTGTTGGCACTGACTCTGGGGAAGGAATACTGCAAGGGAAAACATTAAAGTCCCCTTTTCTTTGCAAGCAACGGGTAGATATGATGGGAGAAATAAAGGCAGATAAATGAAGAAAAGGAGATATGTGTTCCAGGAGACAAGAAAATGTACAGAAATAAACTTCAAAGACCTCAAGGTACCATCAACATGAAAATGCTTGAAAAGTATATGAAGAATTAAACATAAATGTGTTGAGCATCCCAAAATGAGCAATTTCTCCTTTCCCATCCAGCAGAAAGAGAGGGCTCTGGAGAGCAGGTACCCAGTGTGAGGCTGGTGCAGCAAGGAGTTCTCAGTAATAGTCAGAGGCCAGCTTCAAAGATGATACCATGGTGTCTGTAGCTAGACGGGCTTCCACTTGAGCAGAGGGTTTCCCCGGACTGTGGGAGGAGTCTTTGCTCATCGGCCATCTTGGCTACAATGCAAAGCAGCATGTGTTCCACACGTTCCTTGACC----------------------------------AGACTCTTTTGTCATTGTTGAGGCTAAGTGAAAGTCTTCATTTCTGTCCAAATATTACTTTTAGTAAACCCATAATGCT
s HiC_scaffold_1 129299136 2928 + 233722169 AACAACCTAACATAGGAATGAGGAGAGCGAATAACACCGAAAAGGTGTAAACTTTGTGATTTTGAGTTTCATGAATTTTTAGGAGCTGCCTGTCACAGGAAGAGCCATGGCTTTAATGCTGCTTTGAAAC-----ACGGATGAAAACACAAAGAGTTTCCTGTTTGTTCTGCTTGTTTCCATTCTCATGAATAACTTTCTACTTTGGGGACCT-CTCCCATAGTAGCTTGCTGTTCGGTGTTAGTTAGCTTTTGAATATCGATAAGCAAAGATATTTACTGTCCtttggtaaaaaagaaaatgaaaaagaaatctccTGTTTATTTCTTAGGGAAT-GGGAGGGTTGTCAACATGCAGTTTTGGAGTctgtatttcaaaaaaaagtcACCCTTCTTATTTAGCACTGCCCTTCataatacaaattgcaaataaggCACAGTGCCAGTGCTGAAAagtaatttcaattaaaattccCAGGGCTTTTCAGGGGTGACACAGGAGTTAGCTTTAACGCAGTGTCCTTGAGTCTGGGCACAGCTTACCTAGAAAGCTTTGAAGGGAGACAAATGATTTTAGTGTCACCT----CCTTTATCCACCTCTTTCCTGTTTCCCCCAAACCATAAACAAACCAACA-CTACCGTTTCCATGAGAAAGGAGGTTGGGTGATCGCTTGTCTGGAAAAGCTGGTAATGGACTATTAAATAGTTGTTTGTGAAATTACCACACAGTagagtgtttgtttgtttctgcagAAGTATTTCTGTTTACTCAGTTCTGGGTAAAGAGCAGATCATTTGACAAGGCCCCAGAGTAAACAACACCCTT----ATATTCCCTTCCTGTCTTTTGGTCAGGTCTGTGCCTTTTCCGCTGTTAGGGAACAGGATTTGTGGAAGGAGAGGATTTGTGGAGACTTTACAAATGCCACGGCAACTAGGGCTCTGTCTGGTGTGTTGGGCTATCTTATACTGAAGGTTGAAATAGCCTATCCCAAGAGACACTGTACCCCTTGTTTTAAAGTGTCTCTCATAGTTCCTTGGCATGGCATTCAAAAACCACACAGTTATACTCT-----------------CTGCTGATAAAGT-AAGAATTGCTTTGAACG-GCAACATTAAGCTGATGTCCA-CATTGATATCTGAGCTTGAATAACATCTAACACTTACTGAATGTTCAtttatgtgtcaggcactgtgctagagGTTT---TCTCCCTATTTACCCTCATAAAAGGGCCATAAGAGTACACTATTATTGTC---CACAGGTGACAGATAAG--------AGTTTAAGCTATTTGATACATCTATAAAAAGTTGGCAAGAAGAGGAACTGTTATTTGAACATAGATTCTCCAACTCCTAAGCCTGTGTGTTCATCAGACTTTT-TCAATAGAGATTGGGGTTCAGAAAAAACAGGGCAGAGGACAGTTCAACTTGGATGTGAAAA-------AGTGGTGTCCC-CACATTCCGGAGGCTCATTGCAGGGAGTGTGTGAACAAGGGGAAGTCTCAGTGGAGGGAAGGTGGGTATCTTATGTTCCTGATCACTGGTGGGAGTTTGCAAGGGAAGGACTGGTGGAAACCAACACA----AAGGGGGAGCCTCAAGGAGGTAGAAGATAATTTCACAGATATGCTTATGGCTTACTTGATGgaatcattttcttaaatg-tctCCTTGATCCTGAAATTGCAAGATTTCTGCCCCTCATTCACGGTTGCCAGTTACAGACTTTGCATGTAATTCTACGTCTGTAATG--TTGTA---------------TTAATTCTCTTTGGCAGCAGAGAAATCTGAGAAGCAGCGG------ACTAGAG----CTCACACA-----GCTTGCTCTGAGCT-AGTGATCTTTCCAGCACACCCCA-GAAACCGCTCATTTATTGCCCCA-AATGTCTTGCCAGCCAC---CTTCTTTCCACTCATGGACTTTCATTCAT---TTTGGTTCCATCTCATTTTAGGCCTCTTTCCTTTATAGGGAA-AGCACAAGTCGCATACTTACTGCTGCAGTCTCAGTCTGATTTTGTGTTCTGTAATTCATTGTTATGTGGAGAATGCCTTCAGTGAAACACAACAAGCTGCAGAAAATATAATTCTCCCTTAATGTATATTTACTAAGTGTATTTATTATTCATCGAgatgtgcattttaaaatgtgagtctGGATTCCCTCACTTTTAATCCCAAACAAAtgttaaaagatttatttttataataatcctGGAAAGAGAGCTAAGTAAGCCTCCCTGAACGCAGCTTGCCAAGTGGTAGATGTTCGTGCTATATATCCACACAGGATGCTCAATCTGCAGTTGCTTGTCGTCTCTTACTGTTTCTAGTGGTGATGTACAGAAGCATACGAGCTCACCAGGGCTCGTCAATGGTTGCAATTTGTTGGTTCTGACTCTAGGGAAGAAGTGCTGCAAGGGAAAGCAGTAAAAT-CCCTTTTCTTTGCAAGATACAGATAGATATGGTGAGGAAAATAAAGGCAGATAAATGAAGAAAAGGGAATATATGTTCCAGGAGACaagaaaataggcaaaaataaGCTTCAAAGACCTCAAGGTACTATCAACATGAAAGTGTTTGAAAGGTATATGAAGAATGAGACATGAATCCATTAAGCATCTCAGAATGAATAATTCCTACTCCCCCATCTTATGAGAAAGGAAGACTCTAGAGAGCAAG-AGCCGGTGTGAGACTGGTACAGTGTGAAATGcttaataatagtaaaaaaccAGTTCACTGGAGGATATCATCTTTCCAGTTG--GGTTGGACCTTCATTTGTGCA-AAAGCTTCACCTGACTTTGGGAAAAGTCTTT-----------------TCTGTAATTCCAAATAGCATCTACTTCCCATGTTTCTGAAGCTTTTAGGGTATAGCAATTTTTAGTTATTACCTGGAGAATTTTGTCTCATTGGTGAAGCCTAGTGAAATGTTCTATTTCTGCTCACTTAAT-TTTTTAGTAAACCAATAATgtt

a score=70070
s chr3           143111269 3443 + 160039680 AAAGAGATAATTCAATTAAAGATGTCACTGGGTTCAAATCCTGGG----------CTCTGCTGTTGGGTTGCAT---------ATCACGG--------TATTCAAACTCCAGTG----------TATTAGAATGGAAGTTATATAGAAGGAAATGCTTCATGTTTAGCCAAACAATGTGGTTGTATTACATTGGGTAGAGCCAAAGAAA-----GTAGAGATTAGTAGGTCCGGTTTTGAACATACTATCAAGTTAGTAGAGGCAAAGATGGAAGGACAGAA---------TCCCACTGACTGACAAGCACATCCCTCTTTACTCTCCATTCTGCCATGATGAATTCTACTAGTATTGTCTCCCTGGAGAAAAATGACTTGGCAGTATACTTACTTACTCTGAGTGAAAACTGTATGTTGTGTAGTATAGGGAAGGAAATCAGGGGGTGATTTCTACATATATTTCAAAC--------------------ATTGTGCACCCATTAGATAATAATATATCTGAAAAATGTCAGATTCAACTGGGGGGGGGATCAACTCTGCTCACATAATAAAACAATTTCAAACAAAATTAAGTAAAGCATTTTTTAAGGACATGGTAGAAGA-AACCACTTTCTAAGAGTCAAAAGGAATAGTGATAGTAACCAGAATGGCCTCTCTGTCCTGCGGTCACTCTGTGGCCTCAGTCTTCAACCTCTCTGTTCAATGGTGTTATTCCTGCCTCTCTGACAGATTTCTTCTTGACTGATGCTTTTTCTTCCTTCACTCATCTGACTGGGACCAGAACCATTCTCTTCTCTGCGAGACACTAAGGGGCATGGCCCCAAAATTCTAACCATAGCCCTTAGCT--------ATGAATTAAATGAAAATAATTTGGTATCTTTTGCAGGACTTGAAGCTTGTAATAAATGCCACGGATGTTATATAAGACAACTTATACACTACATTGAAAAGAACCGTTTTGACCATCG---------TGAAAGAGAGAATGGGGA-------GTGGGGAGGGATTTCTCTAATGACGTCATAAGAGCCAGGGACTGGCCATTTCAGTAGCAACACGGAACACACTGAACTGAGGCGGGGGAGGGGAGGAGCAGCGCAACAGGTCAGATGTGTCTGTGTGCATTT---ACTTAGTCTTCTCCTAGAGGATTAGAAAAGACAAAAGAG---------------TCTCAAACCAGTTTACAGTTAGTGGACTCGTGTGTGCACTTGGGTCACCTGTCTTCTGAGTTTCCAGAAGTATGTGTTTTTCCTAACCAAAAAATAAGAAGGGTCAAAGTCACTTGGATTGTAGAAGCC--TTTGAAATGTAACGTGTGCATGCAGACATAACAATGGCCAGCATAGTGTGCTGTACCAAACAGGTTTTCCACACGTGTGCCTTTTTGTGTGTGTCACATGTATGTGACATGCAtgtatct-atgtgattgaacatgtgaagat--cagaggataagaggacagtcttcacctgtcaatcctcatctctctacactgtttgaaacaagagttccaaacaagctgtactgtgggctcctggagatttccttgtctccacctcccagttattacaagtgtgttgggattgcagacattggatgctattgcatccagcttttgtgtgtgtccatggggggtctgaactcaggtcacaaggcttgtgcaatgagcatctttgcccatgaccatctcTTATCTGTGAGTTTTTCTACTTTTCAGTAAGTGTTCAGTAAATGAACATAGTACCACTGAAATGTTGTCAAAGGTTATATTTAGTTCCTCAGATAGGCTCAAAATAATGAAGTTTTTCTCTCATACAAAGGTCTAAGATAAGAATTAAA---AAAAAACAAATTAAGGAGAAAGAAGTAAATGAGACATTATTTCTCTAAACTTGTTTTATTGCCTGTCAGGCAAATATCTCCAGGAGATGGACTGAAAGGGAAAAGACTTTTTCAGATGTGAGCATCTGAGCCACAGCAGATTTGTGGGTATTATTGGCTTTTTCAGACATCAAAAGCAAACCGTGTAAAAGATGATGGAGGTGCTCACACAGGAATGGTGAATGGAAATGAGCAAGTAGAAGTTCATGCTCAATAAAAACACAAAATGATAATCAGAATAAATGAGACTATCAGTGCACAAGTAGACGAAAATCAGCTAGGAACATCTGTTCAGGTGAGGCTGAAATTAACAGAATAATCAGGCTCTTATCGTGTGCATTTGG-AAAGATGTCTGTGAAACATCCGAAGGGTAGCAGCTCATG-TTTGCCCAAGTGGAATAATCACATACCACCTTTGTATTTCCATTCAATAAAATTGGGCTGTGTGATAGTGGCTGTTATATTTTCCAAGAAACAGAGGCTTGTAGC-AAAATGCAGTCAAATATGTGGGAAAGATTGAAAAATTTTAATGGTGAAATAAAAATTGC-CAGAGAAACATGCAGGAGTTAGAGCAGACATGTAAAAAGTGGTCTATTTTAGCCTCCTGGTGAATG----------GATATGAAGATAGAAACATTTATAGAGAAATAACACACAAGTGA----------------------AACACATTGTCTTTTCGTTCTAGAAAAGATAGGCTACATACTCATCTCCTCATTCTTCTTGCTAGATCCTGTTAAAAACT---GAAACTACAttcaagttcagtcttgtagttctaagccaactagagtcacatggtgagactttatctcaaaacattaaacaaaGAAACTGCAACCCTCCTAACTGCTTCCACCCTCCAATTCTGAATATTACATGCAAAAGACACCTAGGAGAACACAGAAGACAGCGTGGAAGCCAGCGAGATAGCAATCTCTGGGTATAA----GCGACATG----TTAGTGACCGACGAAGCTGACGCACAAACAGACTATCCCAAGAAAAGTCTTGTGTCCTTGGCTGAAGGCCCAGGTTAATGTTCTCCTAGGAACAGAAAAAGCATTCAATAAGGTTCCCTT-------------ACCATCACAGAAAAGATGGTGCTCTTACCTCTATCTGTG-TCAGCATGGGCTGATGGGGGAGGGGGCCTGAGACTCTGTTCTCACCTGGAGGAAACAAGAAATGCCTCGC----------TGAGT--------------------AGAGTCTAGGGCTTTTCAGTCTAGGTCAGCAGCTCCGTGTCTTCACTGTGGTGTGGGTGGGG-----CCTTGTTGAGACACAGTA---TAGGTAAAGCAGAAGTCTCTCCCCCAAGCCGACATGCTgg---agatataaatgagacacacggtcaaataag--------------acagtatgaaacccatactcagagtgcaatatgagaaatcacttgtgctatggagaaccaggaagaactcaacttgcgcattgaaaggggatgagcagaagatagtggcagaatggaatagcgatgggaatcaactgacaagggtattgaagga---------------------tcaataataaTCATCTCACATACTTAAAAGGGGTGAGGGTGAGAAAGGTCTAAAAAAACCAAAGGTCAGTGCTGGAA----CTGAGAATTGAAGCCACCAAAATTAAATGC--------------------TGGAAT-GAAAAGTCCAATGATTTAGTGAACATGAAAGTAGaaca
s HiC_scaffold_1 129304527 3208 + 233722169 AAAAGAATAGGCACATTTGAAATGTCACTTAGTACAGATCTTGAGATAGTTCCTTCTTCACGATTGAGCAGCATTAAATTAATAACACAGGTACGACCTATTATAAAGCTAGAGCTGTAAACATTATAAGAATGGAAGCTGGTAAGAGAACAATGCTCCAGTTTTATCCaatgttttttactttcttttattggCTAGAAATGAGGAAACTAAAGCAGAGATTAATCCCTTTAGTTTTGCATATACTCTCAAATGTGTAGAAGCAAAGAGGGATCAAAAGGAATCCTTTTGTCCCACAGACCAACGTGCAGTCAGTCCTTCAAACTCCATTCTGGTATGTTGAACTGTTCAAATATAATTTCACTGGGGAAAAATGAATTTGGGATGTACTTGCA----ATGCATTAAAACTTTACAGTGTGCATTGCAGAGAAGAAAA-CTGGACATGGTTCCTATTTACATTTCAAATGTAATCCCATCATATATATAATGGTATACTGGTTAGATAATAATTAATGTTGAAGA-GCCCTATTTAA----GCAAAGAATCAACTTTAATCATGTCATGAAACATTCTGAAACACAAACAAGAACAGAAATTTTGGAGGA-ATAATGGAAAATAGCTACTTTCtaaaacttaaaaggaaaaataatagcaaatcaaATCAGTTATATGTACTACGGTTACTCTTTGGACTCGTCCTTGAATTTCTGTGTTCAATGCGACCATTCTCCCCTCTCTGGAGAATTTCTTGTTCACCAATGCTTT--CCAAATTAGCTCATCTGACTG--AACAGAGCTGTTCTCGT---TGTGAAATACTAAATGATGTGACCTCTACATTCCTTCCCTAGCCTTTAGCattcaataaattaattaaacagaAATAATCGGGTATCTTTTGCTGAACTTGGGGCCTGTAATAAATGTCACTGGTGTCATAGAAAAcaatttgtaaattattttgaaaggaatTGTTTCAACTACAGAGGAGGCAGTGAAAGAGACAAATGAGAAGGATTTGTGAGAGGCCATTTCTATAATGACATCATATGAGCTAAGAGG-----GTTTCAAAAGCAATTCTATTCATGCCAAA-----------AGTAGGAAAAACAATGTAGCATGCCTAATATTTCTATGTTTGTTTGTTACTTTACCCTTTGTTAGATTgtgggagaaaataaaagaagtggAGTCATAGAAACTTTAAACCAACTTA-----AGTA---------------TTGGTTTACTTGTGT---GAGTTTATA------------TTACTTAACTA-----------------------CTAAGTTTCCAGAAacccttttgaaa--------------------aaaaaaaggacaag---------------------------------------------------atcACATGGATTTCACAAtcctttgtttcaaaatattgcAGATGTGAAAACAACAATGGTTAGGAGAGCA---------TGTCA--CCTCA------------------------------------------------------------------------------------------------------------------------------------------------CATGGG-----------------------------------------------------------------------TTTccattttt-agtaaaatttc--cAAATGAGCATTGTATCACTGAAATGTTCTCAAAGGTTATGTTTAGTTCATGAGACAGACTGAAAATAATGAAGTTTTTCTCCCATACAAATTTCCaagatgagaa--aaatttaaaaagcaaattaaatagaGTGAAGtaaatgagacattatttctctaaaattgttttattgtCTGCCAGGAGTATATCTTCAGGAGATGGACTGAAAAGGAAAAGACTTTTGTAG---TGAGCATCTGAACCACAGCAGATTTGTGGGTATTATTGGCTTTTTCAGACATCAAAAGCAAACTGTGTGAAAGATGATGGAGGTGCTCAAACAGGAATGGGGAATGAAAATGAGCAAATAGAAGATCATGctcaataaaaacacaaaatgataaTCAGAATAAATGAGACTATCAGCGCACAAGTAGAAG-AAATCAACTCGAAACATCTGTTCAGGTGAGGCTGAAATTAAGAGAATAATCAGACTCTGGTTGTGTGCATTTGGAAAAAACATTTATGAAAGATATGATGAGTAGCAGCTCATGCTTCACCCCTGTGGAATGATCAGACACTGCCTTTTTA---CAAATCATTAAAATTGGGTTTTCTGGCTGTGAATTTTATACCTTCAATGAAACACAGGTTTGCGGCAAAAATGCGATAGGCTGTATTGCAGATTTACAGAAATTTTAATGGTGAAATGAAAATTTCTcagagaaatacataaaaa-tatagtaGATATGAAAAACAT-TTCGAAGTGATTCTGCAAACGGATGAAAATACAATAACATGAAGTCACGAAAATCCTGggttaaataatatatatgtagcAAAGAGAGCATTTTCTATCACAATATATTCACTTTGGGGACTAGAAAAGATAGGATGCATCCATTCTTCCCCATTCTTCTTGCAAAATGCTCTTTAAAACTCTGAACATTACATGCAAAATGAA---------CTTAAGATAGTTGAA---AGATGAAGAGA-----------------AGGCAGAGG-----------------------------------------------GTGGGTAAGAGACCTTGGAG--CCTGAGACACAAC----AGGTCAGTGAGTT-----CCTTGGTGTTTACTTTTGCTACATAAATCCCAGCAACCAGGAAAG--GCCACATTTGCAAAAAGTTCCACAAAAAATCTGGTGTCTTTAGTTAAAGGACCAGGAAAGGGACAtcctagaaaaacagaaaatgtaaaaaatagtCAACTCCGTATTTTATTCAAGCATCAAAAAAACCCTGGTGTTCTTACCCTCCCTTTTGTTCACCACGGCCAAAT------GGGAGCCAGGACTTCTCCCCTCATCTGGAGATAATGAGGCCACTCTTGCATTTGCTATGTGGGTTTTGTCAGAGAGGTCAAGTGGGAATTCAGGACTTCCCCTCCT---TCTGGAGC-CCATG-AGACACTGTCTTGAGAATGAGGGAAGATCTGGTGGGAACCTGGGAACCTGGG--AGGCAGCACCATTGCTCCTGTG-----ATGCAGGGTCAGAGGAGAGTAGGCAGAGCGTTTAAAGAGGTTCCAAGCCTAAGAATAACATACTTCTAATGCCCAGaacacaata--agaaatcacttgtCCTACCAAGAACCAGGAAAAACTCAGCTTGAATGGCAAGAGTCAATGAACAGAAAACAATCGC--CATGACACAGAGGTTGGAATTATCTGTCAAAGACTTTAAAGCAATTGTTATAAAAATGCTCCAGTCAGCAATTATGA----ATAcacttgaaacaaatgaaaa-atgaaaagtatcagcaaagaaataggaaatataaaaaaaccctgaaaaatataataaccaAAATTTAAAGCTCATTAGTTATGTTTACCAATGAAATAGAGAGGACCAAAGAATCAGTAAACTTGAGAACAGAACA

a score=34339
s chr3           143115586 2794 + 160039680 aaaagcagaaaatgaataaaacttacaaaaa-gagttaaccccaaacagaaggatcgcaaagaaatccaagccaGCCATGTAAGAAGCAGCCTCAGTGAGCGGATTGCTGCATGACTCGTGGGAGTTCAGGAGCACATGCAGGGAATCCTC-AGGGACTGCATAGTCTAGAAACAGGAACTGTTTCTCTGGCAACCTTTTGAATTGCTTTATTGTTATTATATTCTCTAGCTCACTAAACCCTGTGAAATGGTACTGTCTTAGTTTCTTtttatttcctct-cacaatttgagtggaccgtccattctggtggggaaatcaag----------------------gcatcaggaaattggagtagctgaccacatctcatccgcagtgaggagagctgtgg--------atatgg-------gcctgccc------acaactaaatgggacttccgaaatca---agtaacgctctcaagatgatttgccctgg---------------gtattggcagatatctacgtcccaaca------------gattctatattctgtcaag--tcaacagt--taac-----------actaactgtcacaGCTACC-----CAATCGTCACTGGGAA--CATATTTACAAACCAATGTTTAATGACTTAAAATTTA-----------TAAATACACACATCAAAGATCTGATGAGTAAATAAGTAAGGGAAA--ACGAATAACAGAAA----CAAGTGTTTGA---TTATTTTTATGTAGTTGTGAGGAAGAGGCATCCTACCTGTGTAAGATGACTCTAATTTTTTGATTTTTTTTTGT-TTAAAATATGTCTTCTTTAAGAATGTTTTGCCTAGCCTAAAATCACATGCATATTTTTCT-TATTTTCTGTTAGTTGAGTATTTTTGATTACAGATATATCAGGTTCTAGAATAAATTTTAACTTTCAGTCTTCAAAGATCTACATACACCTTCTGGGGTCCTGTGGAGAAGGT---------------CACACCCTCAATACCAGTGTGGTTTACTCTGGCAAGCGTGGCACATGGGAACTGCAGAGGTATACTTATGTCACAGAGGTCATTGTTTTGTTTTGTTTTTAAATGACATTTTAgtgtgtgtgtgcatatgtgtgtgtgtgCATgcatattccatggtgtatgtgttgatgtcagagggagttggagtccgtattttccttcttctgtgagacctaggaattgaactcaggaagtcaggcttgacagcaagcgtctttattcaataaaccatctcaccagacccTGTGCAGAGTTTCTTTAGGCACATTTTGAAAAGCACTAGTTTTGTGCTGGAATACTAGATATTATTTAAAACATTATATGA-------AAAAATGATACTCATGCAGGCATGTAGAAATTGTGAGTTTTTTAGTTCTTGTAGCATGGTTGGATGTCAGAGGCCTTGAAATGCTTTGAGAATATAGACTTATAATTTTTTTATTTGAATAGT---GCTTTCTCTTGCCGTCAAGCTCGCATCT-------------GAGTGAAGGGATGG--------------TCTGATAATGTTCTCTAGGTAGCTATGAGGCATTTTGATCTGCCCCTTCCCA--------TTTTGCAAAGTGAAGG---------TTAGTATGTTCCTATGCATGCGTTTCT----CCCTCGAAC--TTCCCCAAATGTGCATCAGTGTAGAGCCTTGGTTCCACACAGTGCTACAACCAGGAGACTACAG-CTTGTTTGTACCATCAACCAAGTGCTTGTGTGTA------------------------------------TCTGAGATGATTTTATCTTTTTGCTATGGCCACAATACAGTCTCAT----------ATTTTATAAAAAGTAATCAAGAAGTGGTAGGGTTAGGACTCAATTGGAAACCTT-CATATGTGCTCAAGAATCTGACCCAATGGCCACAAGCT-AGGTAGGACTCGGCAATTATTATATACTCAGAATAAAACATTCAATAGTGCAATAGTGCTAAGGACATCATACATATCTCTTCAAGCATCTCAT--------------------------------------------------------------------------------------------------------AGAGTTAAAACCCTATGTGTGCCATGAAGAAAAATGACAGAGAAGGTATACACTGAAGGTCTACCTTAAA-ACTACAAAGCCCCATGTCAACACAAATTCTATAAAAATTCACGGTTCCTTTCTCAATAATTTAAATCTGATTTTGGAAAATGCATATTTATATGTAAAAAGGAGAGGAACATTAAAGCTGGCATAATACCGTCAGCTGTTGGCCATATGGAAAAATTTAAATTGTCATAAAGCTGGCCAGTTATGAAATGTTTCAAATAGTTTTTTTTTAAAAAAATTACATTTTAAGCACTTGAGCAATATGCTCAAAAATATATAGTAGAACTACATTAGTAATCCCTTTGACTATAACCTTATATGATCATTCCATATGTAATTAATCACTCTTTACATTTTAGCTGACC--CATTATAGGTGGTGAAGTATGTGTTTTTGGTGAGGGTTAGATAAAGATGTTAAAAA--------------TGGAGAATTACA--------AACAAATTTTTTTCAGGTAGTGAAAATTGGACTCAGGGCCTTG---------------------TGCCACTGATCTGTGCTCGTAACCCTGAAAATTCTGTTTTGATTGTTATAATTCAGTAGCTGTGTGTAGTAAAATGGGAAGTAGTTATTACTTAGTCTCAGTTATTGACTATTTTCCATGTGTTAGGCACCATT---AGCCCTGCAGTATAAGCATCATGATACACATGAAGGAAGAGGAGAAGGCCAGTGAAAG-AGTGTTTGAACTGTATTCCAAACAGGTTTCAACGCATGTGCTATGTTCTTCATAGTCTGTTTTTAAACGGTTTCTAGAAGTAGATTATTTGGATTTAAAGCTTATCAGGCATATTTCAATTCTTTCTGTAGCTGTGTACCCAAGGACATTAGTACCAGCACACAATGGCTTCTCGCCTTCCTTTTTTGCCATTACTG-Gtgtcttggtttgggtttctgttgct
s HiC_scaffold_1 129308273 2797 + 233722169 aaaagctataaaagaaaaacattcaagaAACTAAGGTAACCCCAATCAGGATAAACCCTGGGAAATCTATTCCAAG-ACAAAGGAGGCAACGTCAATGGGGAATTTGTTTTAATGCTCTTAAGATTTCAGAAGCACATACATTACATCCTTTGGGGACTTTATATGTGAGACATA------------CTGCCAAGTTTCTGaattgctttattattatta----ccCTAGCT-----AGTCCTGTGAAATCCTACA----TAATTTATGTTgaacatatatacacaaattaa--------tgtattttaatgacAAAATCAAAagtcagacaaaataaaaattatgaatcatGAAA---GATTATTAAACAACTCCTAATATG---TGCAAGGCATTGTGATTGTTCTCATATGAATGCTTAGTCTGTCATTGGGGGAAAGTAAATGT--CTTGCCAGGTCAGAAAGTAACAGT-TGGTTATGTTTTATTCTAGAAGCCACAAGGTTGTGAAGAAGAAGAAGTGGGTATGAGAACAACATTGAGCAAGGATTATGTATTCACACTAGGATGAACAGTGGTGACTGTAAATTCCTACTAATGAATATAATTGCTGTAGGAAATCTACACAAAAAAATTATAACTGCAACACAGTCTCTAAAAAATCACCTCTCAAGCTGTTACACTATAGACATGCAATAAATATTtggagaatgaatgaataagagaaagaatgaatagCATAGAAATATAAGGGTTTAAGCTTTGTGACAATGCAGTTGTGAAGAACAGACCTTCTAACTGTGTAAGAACACT------TTTTAACCTTGTCTTATGTTTCAGCATGTGTTCTT-AAGA-----TTTcgtattttaaaatcatagacctattcttttgtgttttcctttaattgagaGCTT--GATTGCA--TACAGCTAGTttcagaataaatttta---tttagtctttgagGACTCACATAgacttttcagagtgctgtatGGAAGTTGTGTCTTGGGGTGACCACATCCTCACTACCGATGTGGTTTTCTCAAGCTAGTATGGTAAACAGTAA-----------------------------------------------TGAAATGATAT-------------------------------AATTCACATT-------------GTTGA-------------------------------------------------------------------AGGCTT----------------------------------CCAGA--------------------GGTCTGTTTTGCAGAGCACTCGTTTTGTTAGTTATCAGTAGATATTcttcaaaacatgaaataatgGGACTAAAAATTATGC-CATAGGTAAATGTGGAAATTCTCA--TCTTCAGTGTTCATAGCATGATCACATAACAGAAGCCCTTAGATATTCCTAAAA-ATCGAGTT-----TTCCTCACCCCAACAGCAGAGACCTATCTCAAGGGGAAGTTGCCATCTTCTTGTGGAGCATGAGATCAGGAATGGAATTGCATGCTTATTCTGGTAGTGTTCTCCAAGTGattctga--tattttttttaacCCTTTTTTACCTACTTCTTTTCCAGACTGGAGAATCACAGATTTAGTTTGTTAATGTGCATGTGAATCTGTAACATGGGAATAGTTTCACAagtgtgtgtgaatatggatcCCCAACTTTGTGAAGAGCTGGGGCCAGGAGATCATAAACACACTTTTGCCATTCACaaagtgcatgcttgtaatctgaacttatttttatttatttatttattttttatctgaacTTATTTCATCTTCTTAATATCTCtgtaatgcaaaataatttttataaacatgTTAAAAAAGGAGACTTAGAAGTACTGGGTTTAGAACTGAAAATGCAGCTTTGCATA-GTAAGTCTGGATCT-CCTCAGTGGTCAAAAGCCCATATTGAACTGGGAAATTAGCatacatttattatataaaaatcaacaatTTAATAG--------ACTTTAAATCCACATCTTCAAGACTCTCAACAGTTTAAACTTGGGtttggagtatagctcagtggcttaagcgactgcctgacaagtacaaggttctgattcaattcctggtactcagaataaaaaaaaaaaaaagagtgaaaacttTATGTATGCCATGGAAAAAAATGATATGAAAGATGTACCAGAAAGGTCTAGTTTAAGTACTAAAAG--TCTATGTCAACATGGACTgtctaaaaattcatttttcccttctcaataatttaaatctg-tttttcaaagtgcatatttatatataaaaa--aggaGAACATTAAAACTGGTATAATATCGTCAGCTGTTGGCCATATGGAAAAATTTAAGTTGTCAT-AAGCTGGCCAGCTATAAAATGTTttagatagtttt------aaaaaatcatattttaagcaTTTGAGAAATATGCTAAAAATTAATCAGT-GAACTACATTAGTAATTCTTTTGAGTATAATTTTATA--GTC-TTCCATATATAATTGATAGCT-------TTTGAATTGACCAGTACAATAGgcaatgacat-tttttttttggtggg-----gataAAGATACAGGAGAATTTTTTTCTAACCTAcataattatatgtatttttactattttatgtgTGTTACTAGGGGTCAAACCCAGAAACTTGAGCATACTGGGTAAGTtgttctacctctgagctacatccctaactcccaaaatacattttaaactgTCATATCTAGATACTTTTGTGTA-TGAAGT-AGATGTGGACTTTATTATGTATCATTTATTG----------ATGTGCAAGGCACTATGTGAAAGCCTGCA--ATAGATGGCATTATATACAT----GGAGAGAATAAGGGAAttgaaagaagttttaaaaatttatt------------------------------------------ttgttaaatt---------aataatttcattGGATAGACAGCATGTAAAgtacattttaaactattttctagTACTGTATGAATTTATATTTGCACCAGCTGTAGGTAAATTTTTGCGT---ATTTTTACTAtcactgaatattttaatttttttattttttgct

a score=24120
s chr3           143120191 527 + 160039680 TCTCTTGCTATTCTCAAGG---TGTTCCCGTTCAGCTGTGTTAGATCAGGATTATCTTACTAGAGAGGAAAAAAAATGGAAACGTAACAGCTTTAAGAAAACATTGTGGCATATTTGCTCCCGTAAAAGGTAAACCACGCTT-GTACTGAATTC----TATGTCCATCCATTTGATAAATGTGAGCACGCAAGATAATAA-GCTATGTATTAGCTTGGGACTATATTTTCCATCCCAACGATTTGGCTTCAGTCACCAAACATACTGTATACCAGATTTTACAAACCACAGGAAAACTGGCACAAATTTTGTGTATTTTGCTTTGTAAAATGAGACACTGTATTTACTAACGTTTAAAAAAAGTGTTTTTTTTTATATTGTTTCAATAAATCTCTGGTCTTGAAACAAATGCAAATAAAATGCTTAGTCTTTAGGCATTGTCTATAAGTAAAATTTGGTATGTTTTTCAAATAGTTTGGGCAAATGTAGAGATAAAATTCAACTAAAG-TGGGGTTTCGTCTTTAAAATTTCTAGTG
s HiC_scaffold_1 129311968 510 + 233722169 TCtcttatcaatttaaaaaatatttcctttttctgccATTTTAGAATAAGAAT---TTGctttagagaaaaa------------cagtaacTTTAAGAAAATGGTCTTATGTATTTGTTaccttaaaaagtaaaacactctCAGCACTGCTTTCCTATTGCTCCTACATGTTTGATAAATG--------CTACATAGTAATGTGATGTATTAGCCTGGGTCTGTATTTTTTATTCCAATAATTTGGCTTCGCTCACCAAACATACTGTACACCAGATTTTACAAACCACAGGAAAACTGGCACAAATTTTGagtattttgctttataaaatgagATGCTGTATTTACTAaagtttaaaaca----tgttttttgaTATTGTTTCAATAAATCTCTGGCCttgaaacaaatgcaaataaaatggtTATGCGTTAAGCACTTGCTATATGTAAAATTTGGTATGCCTTTCAAATAATCAGGGAGAACGTGCAGCTGAAATTcaattaaagctttttttttgtcttaaaaatttcCAATG

a score=68258
s chr3           143121399 2600 + 160039680 TTTTGCTCGAACCTC-CAAATACTATTGAAGTGTTCAGATTACAGATATCAGTCATAGAGAAATAAAAAGAGAATCCTGGTGCTACATTTATACGTTGACTACGTTGATGTATCTAATCTAT----------GACATGAATCGGAGGAACATGAGGCTGAAGATTGGTGCAGTGTTACATTTAAACACTTAGGAACCAAGGTAGTTAATATAATTTATACTTACATAAACTAAATGGTAGCTATGTTAGATACTTCTTGGATAGAAGTGCTTTTTCCTAGTATTTTAATCAAGTATGCTATCATGTCTGCTCCAGCTGATGCACGCAGTACACGAAAATTTGCTGATGTGTGTTTCCCTTAATGGATCTAATATGTGGAATGTGCTATTAATGTCTATTAGAAATGCATATAATAGTGAAAACGTACTTTAGTCAGAAGTAATTGCTATTTTTTTGAGATCAGAAAAATGAGAGTAACAGTGAGGTGGATTTGTTAAATTTTTTTTAAACCCACTGCCTTCTTGCCTCTGAATTGAAATAGTAACATATCCATGTTCGTATTTTGCATAAATTTGCATGACAAATTCCCAAAGCTCTAATTTGAAGTTAGTAAAATAAAAGGATGCAATTTCCTTTAGCTTTCTGAATGCTCTGGTAGTTAGAGGGAACACACAAATCAGACTTTTTAAAGAATTAATTTGATTACCTTGTAGGCCAGAAGACAAGGGAGTGAAACTTAGGGAAAGTTCAGAGCAGGAGGGGAAAGAGTAGGAAGGAGGGG-CTGGGGGAGAGGAGGTTGCACGGGCAAGCTCACCCAAATTC-----TCCTGCGGCTATAAGAAAAGCCTTACTGAAATGCACTTCATCCAGAAGTCACCCCTTTAAAGGACACA------------CTAGTGTATACCCAGAGCTGGGCCACCACCCCCACCGTCCAGTATTAAGAGTGTTTTCGTCACAGacctaatagctgtcactccc---tctccccttcttccagatcccagcaacaactcatttactttctgtctttattaattCTAATATCATTTCTCGGCAACATTTAATTTTATTCCACTTCATAACCCTTAAATCTCAATTGTTTATGCTTTGCGCTCAGTGATTGATTATATTAGTCATCTATGTGCCTTGGCAATTTAGTTTTGAGTAGAAACCCAACCTTCTGATGCTT-------CAAAACTATTATAAATAGCTGCACTGGAAAGCACGAACCCTGCTGTTGCCTTATTTAATCAATACAAGG-TCATTTCAAACATCCGGCCTATTGTTTTCCCATTTCACCTGCACCTAGGACAGAAGATAGTTGAAATGGAAGAACAACAAGAACATCAAACAAAAAAAGAAAAAAATTCTCTCAGTTCCCACATTTCTTGTGGTGTACTTTCAAATGCCAGTGGCAATTTGTAGCTGTGTTTTGACTCTGTCAATCAG-------------------CATCCCATAATTACACCGAGAGTTATCCGGAAG----------AGATGAACAGTCTCTGACTAACAAGGTAAAATTGACCTT----------TTGGAATGCATTTTCCAAA--ACTTAAGTAGAATTGTT--AATAAATGGATATTACTAGTATGTGAAGGTGTT-AAGGTCAGGGTTGTGTGTTTGTTGTTCTGA--CTGGAGCTAGACATTTTCTGTACATAGTCATGGTTGAATCAGGAggaaaatggtccactgagattacagcctaggctctgtgggtgctcacagatttggaataga--tcagtgtttagagacctagttaatggacagagc-aagaaatgtgtatggccctttaaggcttaacacctgctaagtttgtattcttacttctagttcaggttctgaattaAAATACTTTTCTTCTACACCAAAATCCTTGCTATAAAACACATAGGattataaattcataattaataaaatataCCATCATTTCTTTGTTTAAAGTTGATATACCCATATCATCTATATTTATGTCTTTGCCCAT-----ATATATCACCTATATTTATCTGTATCTAAATTATCTGTATCTATATATTCAGTGTACTCTTTTGATGTATAGTACCCA------------------CTTTATT-----TCatagtttattaatgtctggtct-ttccattgttttactggtcttctccagaggctttcattacatgtatactaaatctttcttgctcatcctaaatatttCTTG-----TATTTTTT------GACATCTGTAAATCAA---------------AGTGATTAATAATAATAACAAAAATTCACCAAGTCTCACATGCATTTAAAAATACCAGCAATGAGGTAGTATCAGGGACTCACTTCTTTGTTGTTGTAAGAAATCGGCATATTACACCATAAGACAATTTACTgatcaactatctatagaaagtctactgtgtgtcaggcaagatgttaagcCAGATATGAGCATGACAGATATGGAA------------------GGAGACAGGTGTTAACCAAATTGTTAATATAATTAC-ATTTTGACAATTTTACCTAAACAT--CCCATGAGAATTTATACTAAGTGGAtatatgaattttcaattacagctagaatgaattgccacaaacttcaaggtttagttgaacatatcttcattatctcaatgttctggatgtcaaaaatacaaagtgggtcttagtgagctgatatctgagtaccagcatcctcta
s HiC_scaffold_1 129312483 2513 + 233722169 TTGTGCTTGGATTTTGCAAACATTATTGAAGTGTTTGGTTTATAGATAGCAGTCATGAAAAGATAAGA-TAAAATTCTGGTGCTACATTTATGTATTGAA------GACATATCTAATCTGTAGCGGCATGAGAAATGTAGTAGAGGTACACGTTGCTGAAAATCACTGTAGCATTACACTTAAACACTTAGAAACCAAGGCAGTTAATATAATTTATGTGTACATAAACTAAATGATATCTATACTAGAGACTTCTTGGTTAGAA--GCATTTTCCCAGTATTTTAATCAAGTATGCCATCATGTATGCTCCATTCGATGCATGCAG--CACGGGAATTTGCTGA--TGTGTTTCCCTTAATGGATCTAATATGTGTAATGTGCTATTAATGTCTATTAGAAATACATATAAtactgaaaatgaattttaatcagAAATAGTTGCTA-TTTCTTGAAGTTAGAAAGACCAAAATACCAGTGAGGTAGgtttattcaa--ttttttaaagtgactATTTTCTTGTCACTGAATTGAAATAGTAACATACTCATATTCGTATTTTGCATAAATTTGCATGACAAATTCCCAGAGCTCTAATTTGA----AGTAAAAT-AAAGAATGCAACCTCTTACAA--GTATGCATGGTCTGATATTTAAAGAAAGTACatttaacagaatttttaaaaaa-----ttggttacCTTTTGAGGCAAGAGACAAGAGAatcaaaa-taggaaaaat----------gtgAGTAAGAGCAAGAGAGTGAGACCTGAGAGAGAGAGG---GCAAAGGGATGTTCACT--AATTTGTGTGTCTAACAGGTTTGAGA----------TGTaattcacataacataaaattca-ccCTTTAAGATGTATAATTCAATagcttttagtatattcacagaatTGTTCAGCAATCACCACAATCCAGTAGTAC-AGTGTTTT-ATTGCAGACCTATTAGCAGTCATTCTccattctctctcccttcctgatGCTGCCAACAGCTAATTTACTCCCTGTCTTTATTAATTCTAATATATTTTCACAGCAATA-TCAGTTTTATTTCACCTCATAGCAATTGAGTCTAAATTGTTTATAGATTATACTTAGTGATTGATTATATTAATCACATGTGTGTTTTGGGAATTTAATTTTGCATAGAATCCCAACCTTTTGATGCTTAAGCatacaaaattatt---aataattatgtaGGAGTAAATTAATCCTGCTATAGCTTTATTTAAGTAATACAAAGTTCAGTTAAAGCAGCTGATTTGTTAATTTTACCCTTAATCT-------CAACAGAGTGTA----------AGGCatgacaaga----taaagaaataaagcccAGCATTC-------------------TAAGATGTGGtttcaaatgttagtggaaattCGTGTCTGT-TTATGACATTGTCAGTTAATCACAAATTACTGTTGTCTTGCCCCATAACTATGTTAGGAGTTAGAGGGGAAACTATCTTTCAGCTCTCAAGCATTTTACAAGCTATGTGAATCTGACCTTACTTTTATTATTTGAGCATATTTTCTTAAGGGct---gtaaatttttttcagtaaattaaTATTACTACTCTATGCAGATATTCCAGGTCAGTCTTGCATATTTGTCACTcaagatatgaaaagaaatatttttt----aaagtcatgGTTTATTTTAAAGGA------TATGTTGAGGCCATAGTCTAGAATCCTGTTGTCCTCACTGATTTTGAATTGACCCCAGTTTTTA-AGACC---TCAGTGGACAAATCTAGGGAATGTACGTAACTC------------------ATGAGTTTATACTGATACTTCCAATTCAAATCCTGAACTAAATAAGTCTTTACTTACCC-----TCCT----------------------TATATCTATATTTACT---TTCTTCCA------CTTTGAGAATACTGGTTCTAAAAACATGGATTAGATTAAAGTGTTCTGCAGTTACTGATATATCCCTTAT-TGTATTTGT-TCTCAGTTGATAG--CTTAGATTCACAGTGTACTCTTTCAATGTGTAGTTTCAAAGTTTTCCagaaaagtttttttattttgaattatagttt-ttattatttgttctatccctttgttttggttttctactTCAGGGACTTACA-TATCTGTACACTGAATCT---TTACCTATCCTAAATATATCTCACTAGCTATTGCTTCCTTacaatatgtataaataaaaacgTTTCTCTTTTCAATGAttcataagaatta-aaaaatacataaggcCTTGTATGTATCC-ATAACATCAACTAGTGGACATTACTTGGAATGCTGTAATTT-CTGGTGTATAGAATCAAAATACTTGGCAATAAACCAGTGT----GTTATATATTTATAGTGAGCTTTCTATGTGGTAGG--------TACACCTACTCTGAACAGGGTACATTGGAAATACCCTCTCTGTAATGATGGAGACAAATATTAGTCACATAATTAATATAATTGCTATTTTGATAAGCTCAACCAAACTTGCCCTATGACAATTTATAATAAAGCAATGT------------------------------------------------------AATAta-cttttttatcttaaaattctgACTATTAGAAATTCAAAGTCAGTCTTAATGGGCAGAAATCAAGGTGTTTGAAGTCTCTA

a score=106681
s chr3           143133397 3113 + 160039680 TGAGAAGCTCTTGAGACTCAAA-----TCATTTGTATTTTAAATGAAGATGTTTTTCATGGACCAGAAGGAGGCAACCCAGAATCATTGAGTTGGGTGAAAAGTAGAAATCTATATGTGATGTTAAAGTACTTTTTAGTGTACAAGTTAAATAGCCTTTGACTGTATGAATGTACATACAATGCACATAAGATGTATAATGGATTAAATTGACAAATATTTACCAAAAGACCTATAATAGGTCTAGAA---------ACTTACACATGGAGAATGCTAACAGCAAAACGATAGGCTGAAGACTCTTCAAATCATGGATCAATTA-----CATTAAGTATGA---TATTCCACCTACAAATTGGGTTGCAGTGATAAAATACAGATATCGCTTGTCTTGTAATCTACTGGTGGATAAACACACTGAGATAGAG--ACAGTCTAAGTCAACAGTAGAGCACTGAATCTTTAGTAGTCAAAG--AAGGCC--CCCTGGGTGCTTGGGAGACAAGAGTTGAGTCACCTAAGGTCTGCTGCTTAAGTTTAGGACAGCTTCTCAAAACCTA-GGGGCTTGAGTTGATTGTTGAAGGATGGAAGGAGATAAGCAGATCAGCTTGGTGCT-GGGAACATGACTTAACATGGGTATTTCTCCATAAGCTGTACTTATATGGCTAAGCTCCAGCTTCACGACTACATTTCCAACTTACTAGATAACAATTTGACAAAGAATGCATGTTAGAGTTCATCCTATTAAGGATGCTAGCTCAGACCGTGATT-AAGCAGAGCAGGGTCTGGTGT-ATAAATATTTTCCTTATCCGTAGTGGAAATTGCTGCATATCATATCTCGAAGTTACCGTAAGTACAAGCTTAACTGAAGCATGTCAAGTCTGAAAAAC-TTCTGTTTGTACTTGGGAAAATATCTGAAGAACCTCTACATCATTCatatttatttacattattattattattatttCTACTTTAAATGTTC----TCCTTTCATGACTATTTCACTGATTTTTTTAAAATAAGTATTTCATTTCAATGAAGTTTCCCAAGTACTTTCTAGTTCCAAGTAGTCCTGAATTCATTTTATTTTTTTTATGGGCTGCCGGGCTTTAATCTCTTATCACAGAATCAGAAATGTACCTGTTACATACTGGTGAGTTAGTTATCAATCCCTTGGGCAGTATATTTTAATATCAGTATTCTGGGGGAAGATGGTATAAATCTTGTGTACGGTATTATTAGCTTAGGCAGCTGCTGACTTAAAAAGGCCACTTTAACAAGTCACCACTGTATTATGTTTAATTAGGTACAGTTTATATAATGAGGTGTTCAGTTCTAATGGAAAGACATGCTGTGAGCAGCACATCTGCAGGAATAACTATTACAATCAGCATTGCCGAGACCCATGGAACTGCAAATTAGACTTACTTATCTAGAAATAAATTACATCCCAATGCCTTCATAAAGCTCATTAATTAATTCCACTGGCATAAAGGTCTTTTTCTTAATTTCATGTTCCATTAGCATAATAAACACAATTTGAGTTACAACAGTATGATCAGTTTAATGGATGCTATTTATTTTAGTTTTTTATTTAAAGTCCTGGTAACGTAGAATTAACATCAATATGCTGTTTGGTCCTTTATTAAAAATTCCCATAGGATAAACAACACAGATGCTCAATACAACATCATATATTTGCTGCGTTTTACGACTCTACTAATTGGCCATATGGAAAGGTGTTGCTTGGGTGTAATTTTTATAAAAAAATCTCCTAAATTATATGGATTGTAATAATTACAATTAGTTTACATGTGAAGTTGGATAGGtatatatatatatatatatatatatatatatatatatatatatatatatCCTGTTTCAGGCAAAATAAGGCTAAACAAACTTGGATTATAGCATGCATTATAGCAAATACCAGTTGATTTAATAGAAACATTGACAGTGTTTTAAGTTCTTATTGCAATGAT---ATGACTAACTTTGCTTACATTCTGAAATTATGCAGT--------GTGGTCTCTATTTGTAAAGTATGTATCTTTAGGTACTTGTAGTTTTTCTTGTTTTAAGATtgtctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttttgcatgtatgtgAACCTATATGCAGATGCACATGGTGGCCAAAAATGGGCACTGAATTCTCTGGGGCTAGAGTGACAGGTGTGATGCTAGACTGGACTGGGTGGGGACTGCACTGAAACAGAGCACGTGCTCCTAGCTGCTGAGTCATCTCTCTAGTTCTATAGATTTTTTTTTGATGAGTTCATTTTGTTGACTGGCATGTCATTAAAATATTTACATG-TTCAAACCATAAAATTCCGAGTTAACTGGACCTGCT--AATGTCTGTATA-GCTATT----ATC-ATACATTTTATGATTGATTCCATAAATCAAGCTCTATAAATGCCATATTG-ATATCTTGTTATTGAAATAAAATGCATTGCAAGGTATACACAAATTTTCCTC--TCATGTCACAATATCTTATCTCTGCA---------TTCTTTGTTTACTCAGTGGACATTTGCTAGTACAAAATATAACGTGTGATAGATCCAGAGAGATGGGTTAAGATGTCAAGGAGCTTGCCAGTATGTTTAGAGTTTAGTTTGTATT-TATTTCTGCACTAGTTAGAAT---tgtgtgacaaatgagttcaaagcttagttgtt---agcagtaatggccactaattgttgctcaagttttctgggagtcagaagtctgggaattgctccaatgggtaattctcacttgaggtttcttga--gaaaatgtaggaagatgtttactagtattgtaatcatctgatttcctgactggagtcaggagtctcactttcagggtagcttgcttcctgaggctggcagttatccctaagcctcaatttctctgcatgtg-tccttcctaagg--gcttcttgaatgaccttatgcagaggcgactggctttttcttcagtgagaga-tcaagagactaaggaagaagttgaattctcttttttgactcggatttggaag--acataccgtcaattcagtcaaatcctgatggttatctaggccacctctaattctac-tagaagggTAATTCA
s HiC_scaffold_1 129338803 2832 + 233722169 tgaggTGCTTTTGAAACCCCAAAAtagtattatacattttgaatagaTATGGCTGTTTTGAGTCAGAAGGA---AACCTGGAATTACCAAGTTTAGTGAATATGGAGCCTGTAAATTTGGTATTAA-----TACTTGGCTTACAATTTAAGTAGACTTTGAT-----------------AGTGCCCGT--------CAACTGATTACGCTGGAACATGTT-GCTAAATGACC----ATAGCCCTAGAAGGTTATTGGAATTATACACAGCAAAGATTCACAGCAAAGCCACAAGCTGAGGATAGTATGACTT---GGTCAACTAATATTTGTTAAGTACTAGAGTGTTCTCTTTAACAGTTAGATTGCATTGATAAATTATAGACAGC-----TCTTGTAATCTATTGGTGAGTCAGAACGGGAAGATAGAATCACATTCTGGATGTA---TTTATTATTGAATCATATTTACTCTAAAGCAAGGACGAAACTGAATGTTTAGAGGCCATAGCAAGAGTTGCTGAAGGTAGACTGGGTGAGGT-GGGATGGCCTTTTGGAATGCATGAAGCTTGTATTGAACGCTGGAGGATGAACGAGTTTAAACAGATGAATATGGAGTTTAAGAACATAATTTAGCATACCTATTTCTTTATGAATTGTACTT-TGTTACTAAGCTCAGACTGGATGATTATATTTCCAAAAAATTAgccaacaatttaaaaaataaaaaaaggtataGTGT---CTGTTAAGGGTGCTAATTCGAAACCTAATTTAAACAGAGCAAGGTCTGGTATTATAAGTCTGCTGCTTATCTATGGCAACGAATGTCATGCTTCATATCCAGAAGTGACAAAAGTAGCAAATGTAACTCAAGCATGGTAAGtctgaaaaaaattttgtatGCATTTCAAAAAATACCTGAAAGACCTCTAGATCTTtcacatttatgtatgt----------atatttttaacttttagtaCTCACTTTCTTTTAATGactattttactgattttt---aaaaaggtatgtAGTTCTAATAAAGTTTCCTGAGTAGTTTTGAGTTCCAAATGGACtcgaattcattttattttt---atgggctGCTGGTCTTTAATCTCTTATCACAGAATCAGAAATGTACCTGTTACATACTGGTAAATTAGTTATCAATCCCTTGGGCAGTATATTTTAATATCAGTATTCTAGGG-AAGATGATATAAATCTTGTGTACAGTATTATTAGCTTAGGCAGCTGCTGACTTAAAAAGGCCAGTTTAACAAGTCACCACTGTATTATGTTTAATTAGGTACAGTTTATATAATGAGGTGTTCAGTTCTAATGGAAAGACATGCTGTGAGCAGCACATCTGCAGGAATAACTATTACAATCAGCATTGCAGAGACCCATGGAACTGCAAATTAGACTTACTTATCTAGAAATAAATTACATCCCAATGCCTTCATAAAGCTCATTAATTAATTCCACTGGCATAAAggtctttttcttaatttcatgtTCCATTAGCATAATAAACACAATTTGAGTTACAACAGTATGATCAGTTTAATGGAtgctatttattttagttttttatttaaagtccCGGTAACGTAGAATTAACATCAATATGCTGTTTGGTCCTTTATTAAAAATTCCCATAGGATAACCAACACAGATGTTCGATGCAGCATCATAtatttgctgtattttactactCTACTAATTGGCCATATGGAAAGGTGTTGCTTgggtgtaattttt-tttaaaaatctgctaaaTTATATGGATTGTAATAATTACAATTAGTTTGTATGTAAAGTTGGATAGGT-TA-----------------------------------ATACATATTGCCTGTTACAGGCAAAATAAGAGTAAACAAACTTTGGGTGC--CATGTTTTATAGTAAGTGccaattcttttaaaagaaaatctgacagtattttaaattcttgtaACAATGATTAAAGAGTTAACTTTGCTTACATTCTGAAATTACACAGTTACATAACATAGTC----TTTGTGAAGTATATGCTTTTTGACACTtctagtttatttt----------------------------------------------------------------------catttttctatattt--------------------------------------tggaaAGTGAA------------------------------------------------------------------------------------------------CTAATTCT-------------------GTTCACTTTGTTAgtatgtata--ataaaaatatgtacacaTTTTGTGCTATGAAATTATGGATTAACTGTACCTGCTGGATTAACTGTGTCTGCTATTCAAGATCAAAATGTTTTTTGAGTGATCACATTTATAGAATCTTACAAATATCccatagtatattttattattgaaataaaattcatcaCAAAGTGTGCATAAAATTTCCTCATGCATATCATGGTATCTTTTCTCTTGaggtattttcttctttctttctttagtgtATCTGCTCTTTTATGAAATATAATtcatgtttctt--------atatttttactttt---gataattact--tattttcaatatttaactAATGTTGTGTCTTTGTA--AGTTAGTATGGCTGTGTAACAAATTGTCTGAAAGCATAGGTGTTCCACACAGCAACAATCATCTGTGCTGGCTCAAGTTCCCTGTGTGTTAGAAATGCGGG----------ATGAGACATTCTCCTTTACGACATTTTAACCAATAATGCAGTCAGATGTTGCTTAGGTTCACAGCCATCTGAGGGCTTGGCTAGAGCCAGGGGATACAGTTTCAAGTTGAATCCCTCACTGGTGCTGACAGTTGACTGTGGGCTTTGGTTTATCTTCATGTGACCCTTCCTACAGAAGTGCCTTGAA-GTCTTCATGAGATGGTGACCAGCCTCATTCAGAAAGAGAGACCCAAGGCACTACGGCAGAAGCTGAATTGCATTTTGTGACCTAGTCTTGGGCGGCACACACCATCACTTCTGTCAAATTCTATTAGTCG-CCAGGACAGTCTTAATTCAGTGTGGGAGGGCAGTGCA

a score=23929
s chr3           143139693 1195 + 160039680 CATTCCTGTGctcacaaagtggca----gtgttcagaataagaaagacatcc-aggaagatgtcacattcagtcatcataatgaaagtgactgcgatcgtctatggatatagccaagagtgcttgatta--aaatcctttgcaaaaacctcggctctgtttagaatatttcctttaactgaaaagca------------------------------------------tccttgtaaagactttaagggcactctttgcaga--tccatcccttaagcagcagagcccttg-------tctgtgt-ttttcttgtcatcgcattacagaaagccgcaagtggaggagggcgacttctctcaacgaggcttgcacatggagctttgatctcacagtgcgaatcgtatactaagaattatagagcagccccaaagttcctaagagtgctgagttgatgggaccacaaccatctcaaatggaaagggacagggacagctcaaaatgacaagaagat-tttggac--tctgactattatggaaaagagggagggcaagaaa------CCCCAAGGATAATGGAGGGCCCTTTATAAATATATGTCATACACCATCGAG-----ACCATGTGTGCTGTAAAACCCCACATTCATTGCACCAGCTAATGTCTAGTCTAGAGTAATTATCTCCACTTTTTGTTGATCTCAAGTGCAATGTCTTATTAAAGCCCCATATTAGATATTGCTGTGGAAATAAAATGGCATTGCAGAGCACACTTATAATTTTTTACTGTCCTGAAATTGCCA--CTCATAAAGTCCTTTTATTTTT-CCTCCCTCACTGTGCCCTCCTCTGCTATAAAATG-----TCCATTGTTATATCTGAACTTTTCCCTCCTGCACTCCATTAAAATTACTTATATTCTGCATGGAACTAACCCCATGTTT-TCCATTAATTCTCCAAATAATGGCAATCTATTGCTTGTTATCTCTTCTCTCATAACATGTAC-AGCATGTGGCAGTGCTATGACTTTGTgggtgtgggtggggtggggtggggtgggggagggtgCTGCTCACACAGTTATCCTGGGTTCTATCTATTACATGCTATTACATTAGTAACTGACCATCAGCTTTTGTGATCCTTG-CACTAAAGAT-CTGGAGGACAAATATCTAA-CAACGTTTCTACAAAGGACAGAGGAAACACAGTCATTCAAATGCTCCTACCCCTAATCTGA-CCGTGTATTGTCCATTCACCTGTGAATGCTATacaca
s HiC_scaffold_1 129342769 1189 + 233722169 CATTCCCATGCTCTCCAAATGGCAAACAgtgttaaaaattagaaaatgattcTGGGAAAACATCATGTCCAGGCTCTGTCAAGAAAA------CAGTGCTTTAAAGATGAAGC---------TTGTTTACGAGACTCTGTGTTAAAACTTTagagatatttagagaagtaccTTTAacgacaaaacaacaacaacaacaacaacacaaacaacaacaacaacaacaacgtcCCTGTAAAGATTTTAAGGCCATTCTTTAGAAGACTCTAACTCCTGACCAACAGGGCACCTAAGAATCTTCGGGGTACTTTTCTGCAGCAGCTTTACAGGAGGCTTCAGG-AAATGAAGGCA--TTACCGCAACAAGATGGGTGAGCGTGGTTTTTGTTGAGGAGTGTTAA--ATTTAATAAGGCCTATAGAacacttctcaaaatataaagag----aagtT--------CACTGCCAGCTTGAACA-AAAGGCATggggacaattt----ttaaaaaaagacctttGGACCTTTTAACTCCTATGCATAAGAGGCAGGGTGAGAAAATTTTACTGCAAGGATCATTAAGAACT-TTTATAAGCAAATG--ATTCATTATCATATTTCCAATATTAGTACTCCAAAATTCCACATTAATTGTACCTTTTAATGTCTAGTATACAGAAATTAGCCGTACTTTTTGTTGATCTCAAGTGCAATGCCTTGTTAAAACTCCATATTACATATTACTGCAGAAATAAAATGGCATTGCAGAACACAGCTATAAATTTTTACTCTCTTGAAATTATTAGGTACataactttctgttttctttatttttctcattacatCCTCCtgcactataaaataaaattttcattgtaatacttaaactttt--ttctttaactccATT-AAATTACATATATTCAATAATTAGTTGATTCTGTATTTATCAGTCTGTTCTCTAAATCATGAGAAACGCTCACGT-TCATTGCTTTCTTCATAGCATGTCTGAGTATGTGACATTTTAATGA-TTTAGAGGTCTAG---------------------------------CACAGGGTCACATATGGCTGAACCTGTTATGTATGATTAGGTTGATAGCTGACCATCAAC-TTTGTGATCCTTGTCACAAAAGAGACACCAAGTAAAGTACCCAGttgattttttcattaaaaacaagg-------------TCAAATATTCTGACCCCTTATTTTCTCCTTGCCTTGATCATGAATCCATGAATG-TGTACACA

a score=28839
s chr3           143141367 1275 + 160039680 CTGCTCTTTTCATTCCATCTGTCTTGCTGTGCAGGATCATCTGTTTGGATTTGAGTTTAAGTCACTTTCATTGGGAAGTAAAACTGAGTAGGGATGGGGTCTCTGGATCCTGTCCACCCATTTGCATGCTTTATTAGAGGCATTATGTTACCAGAATTCTCCATGGcatttattgaacacccccctaatttttgtggccaaatactgcacaacattctttgaatgtgttatcttgctgcgttcttatactacgttcatgcattattatctcaactttatgtctgaagaaattgagcgcaggaaatgttaaatgactattctaaggtaggaggtcacccactaaggagacgaaccaggatttaatctaatccttcttttaaatcctatgttgtttTACATGATTCTTTTAAGAATGATATTCAGAGATGGCTATTTAAATGAAGTTCCTTCATTTT-GGAGAGTTTAACGAAGGACTATATAATTCACAAAACATATTCAATGTCACAATGGAGTTCACTCTGAATAGCTAAGTA--AAGCCATCTATAGCAAGCTCTCAGCGACCCAAAGGAACCCTGTCTTACACATCACCACATGCTGTATTTATTTTTCAGTTAAAATTTCTTGTCTTTGCTAGCCTCTGTTTTGGGGCACTGAGGCTGCAGCAGGGACCAGTGGGTCTGAGTTTCACCCCTCTTGACTTTGCACCCCCTAACC--------GTAAAGGTGCTCATATACAATTAGCTGGGATAGGAGAAGAGAAATAGAAGCAGCGGTTAGTTTAGTAGTAGCAATAGGTTTAACTTGTGTATGTTTTCTTATTATTAAAAGTACTCTAAATTTTCTTCATAGTGATTTCTGTTTCAGAAAATTAAAAAAATAATTGAAATGTCTTTGTCACTATACTTCAAAGGCTAAGATTCTTGAAGGA-GTTTAGATCAATAAATTGTTTTCCACACATTTAAATTCTGCATTC--TCTTTATATCATTGTGAATATGAAATGAAAAATATTTTCAAAAGTTTAAAACATTTACCCTCTTTTCCTACTGATTACCC-----------------------------------------------------TGACAAAATAAAAGGCTAGCTTAGAAGTACATTTCTCTGTTGACAAAACAGGTCCACCTTGGCCCACTT--GACAGTCGATTCTTAATTAGAAAGTGCTCTAATGAGCA---CAAATGTTGGTGTTAGCTTCCAGCACTCTGGCCTAGGAATTCTGTTTCTGTGGAGGCTGCTTCTTTTCC--CAGCGTAGCAAGTAGAAAGGAAACAAAAGCCTGTTTTTAATTCTGTAGA
s HiC_scaffold_1 129344004 1296 + 233722169 CTATTCTTGTTCTTTGATCTTCCCTACTCTGCAGTATCCTCTGGTGGGATTCTGATTTAAGTCATTTTTCATGGGAAACAAAG-TGGATAAGAATAGGTTCTTTGGAAAATGTTCACTGACTTGCATGCTTTGTTAGACGCATTGCATCGTTAGAATTCTCCTTGACATTTTTTGAATACC-------TTTTGATTGCTATATACTATGTTAGGTACTCTAAATGTGTtatctt-ttttatccttaaaatacATTAATGTATTGTTACCTCAACTGTATATGTGAAGAAATTGAATTCTGGAAATGTTAAATGACCATTTGAAGGTCTGAGGTCAGATAATAAATAGGAGACTGGGATTTTAATCCAGGCCGTATATTAAATTCTGTGTTGTTTAAGAAGATCTCTTTAAGAGTGACATTCAG-GTGGGTTACAT-AGCAAAGTCCTCTTATTTTCTTTGGGTTTAATGAACAGATGTGCAATTCAAAAAACATGTTCTATGTCAgactagagttttttttttaatattacagaGGAAATAGTCTATAGTTACTTCTCGTATACCTGAAGAAACTCAGTCTTGCATGAGATTATGTAT----TTTACTTTGCAGTTAAAATCTTTTACTCCAtctaattttt-tattagaatagaaaagaaatagcagaaatcaATGGACTTAAATTCCACTTCCTTTGACTTT------CCTAATAAGACTGAGGTGAAGATGTTAGTGCCCTGTtaa-ggggaaggaagaagaaaaggaagacaggGAAGGACCCTCACACAGACAGTGAG-CTGGTggatgtttattttcttgttgttgaaaatatttttactctCATTTATGATGTTTTGTGtttcagaaaattagaaaa--aatagaaatggctTT----CCATAGCTTAGAAAGAAAGATTACCAAAGGACATATAAGTTTGTATTTCCATTTATTCATAATTAAa----acattctatttttacatcattgtATATGTGAGGCTTAAATCTTTCACA----TTTAATACATT-----TCTTGTACTTTTGATCATTCAAGATGTATTAAACTGAAGACTGGGTATGTGAGAAAAAGCTTTAAACTTAATTTGCTGGAATAAAATGGTGACTTACAAGGGAGTTCAGAACTTGGCAAAG-ACATCCATTTTGACTGACTTCACACAGTAGCTTTTTAGCTAGAAACTATGTAGCTGAACAGGGCAAGTATGAGTATTAA-TCCCAATACACTGTCTCATGCATTCTTCCTTTAAGG----TGCTTGTTTTCCCACAGCATGATAAATATCGAAGAAAT----GCCTaccttaatttttttgaa

a score=105330
s chr3           143142628 3541 + 160039680 TTTAATTCTGTAGACAGTGACATGAAAAT----------------TACATCTGA--------------------------------ATGGAGTTTAAGGAATGGTGACAAGTTTGCAGAATGTCAGACTATGACAAAGGATCACAAATTTCCAATGTCTGAATTTTATAGCTCTGCAGATACAAATGTCAGAAAAAAATGATTGCTCTGGACAGCAGAGTCAACATCGCTCTTCAGTCGTATTGTGTTTACTGTATGGCGACTAATGAAGAGCTTCCAGGCCCTGGAGGATTTCAGTTTTGTCAAGTGAGAAG--AAGTCATGATGTGTATAATCATGGGGTCAAGATGGAATAAGGCAACTCCATTATGTACTGCAACTAAACACCATCTAAAACTTTCAAACTCACTATGCCTTATGTTTGTCTCAAATAAAAGCATCACATTGAATTTAGAGTCAACTGCTAGGGCTGCTGGACTTGATTATATAAATGgagtcttggcctgctttccactcct-------tgaatgactttggataagttatataaactctttgagccttatccctgctatttgaaaaccgtagatcatattgcccgccttgtagaactggcatgtgcattaaatgagatgctgcacgtgatgcTCC-----------GGAGAGTCAGATGAT---------TTTCCCAGTGTTCCT----CCAAAACTCAGAGAATTACTGGAGTTTTGGTGAGAAAAAAA--AATTAAGAGAGTTAAAAAAAAATCTGCCCTGAGTGAACAGTTTTGGATCAAAGCTTTGGAGGAGACTGCTGACGGTGTTGACTGCAGAAAGGTTTAGGGATGGTGACAGGCCTTTGTTAATTTAAGTAATTCCTACCTTCTACTTCTGATAATAATTCTTCTGGTGATTGATTATAATAACTGAATCGCGCCACTTAATATTAAGTTGCTTAAAAAGTCTATCTGACTTTTAGACTGGCTTACCCAATTGGTTTGATATTAATTCAGAGATTATATCCTCTATGTAATTAATGTACTGTCAGGGATTACAATTTAAAAAGAAAAGTCAGTTTCAAATGTCAGAGCTCAAGCGAAGACTGAACAAATAGTTAGCTTAAAAATATTTTATAAGGGACGTGGTGGAATAAAAATAAGAAA---CTTTCAAAGTAATCGCTTGTTCATCATGGCATCTCGGTATTACATTTTATTTCTTTCTTAATTTGAATATCCATATACATAATGGTTTGCTTAAAACTCTCACACCTAATTACAGGGGTCACTTTTCCTAATAAAGGTTGCATTTCCCCC-------------TTGATCCCTACGAGTTGCAAA--------------------CTCTACCTGAGCATGTCTTTGTGTTTCTGTGCCGCAGTA-----------------------------------------------------------------------------------------------------------------------------------------CAATATACAGTG--GACTGTGGCGAGGCAGCACCCCCTTGCCACATCAGGGCCATGGGCCCCTAGAAACCTGTTGTGGAAGGCTGCATCCT--CTGTTTGTGCTCTTGGTTTGTTACTTAGAAAAACAGGC-ACTAGGTAGAAAAAAAAATCATCAGATGGTAATGCACCAAGAAACCAAACAATAACATGACGATGTTGATCTACAGGCTTGGTGACCTTTTGTGTTTGTTTAAACAGCTTGTTTTAATTAGTAATGGGTATCGCTTACTCTTATGAGCATTATTGACAATTGAAAACAGCACCTTATAAGCTGAGGAATTGGAGAAATTTAATATGAGTGTTTGTGTTCAGTTTCTTTAGGGGGTTTGCTTTGTTCTTGACATAATGCTTGCAGTTAATGGACAACTCAAATGGAATGGCTTCATGTGTGACACACTGAGGGAAGAGGACCAACAAAAAGCCATTAGTGCCCAGGGAAGAGAGACAAAGGTAGAAATTCTATCATTTCCAGATGGGTCCTTGCTGTTCCTCAGACTCTTTATTAGCTTGACAGGCAAGGGGCAAGAATATTAATGCAGAGGTCAGACAGTGCATGTTCATTCAATACTTCTTTCCACTGCTGAGGTGGTGAGAAATAGTCTAGAGTGCCAGGGCTGTAGAACCTAAGAGAGGATCCCAGTAACAAATAAATGCAATGGCTTGATGTTTCAAACGACAACCCAACCTGACTCGCTAAAGGGAAGAAGTAAATGCAATGGCTTGATGCTTCAAAGGGCAACCCAACCTGACTCGCTAAAGGGAAGAAGTAGCCTTCCCTGCTACACAATACTGAAGCAGGTGACAAAC------ACTTGGAGTGTGCATTCTACTTGAGGAAGTTTGGAAGACTTCAACACAGTTCTAGAACTTGCCCATTTC------GGATATAGT---------GTATTTTATAATGGATTCCAAT--AAGTATCATGATTATCAACTCGAGATGACATGAAAAGCACTCATATTGTTCCTGTCAAATGATTGTTCTCATCTGT-TGTGAGTAACA---ATGTTGCAAATTGTCTGGGGAGACTTTTAAAACACTCTTAggggctatggagatggctcaggatgttaaagggcctcccacacagataacccgaattttactacagaacccatataaaaatccagatggagaggcatacatgtgcaatctgaatctgcctgtagcaaag---taggagacagatacaagacaatcctccagggacttgtgggctacctagtttgtacacagtagcacat----gggaacaaacaatgagagactctccccaaaccaagtggacagtgagaactgactcctaagagatgtcctctgccttccacatgtgcatcttggcacacagtgcatgcacatgcacaGGCACACAACAGGAGTAAAAATATGTCTTGTGTTAGTGTTTGAGAGA------------CACGATTC-------------TTTGTTACTGAGCAAGA----TACAGAGGAGAGAGCGCATTGGGCCGGATTATTCTGTTCAGTCATTAGATAGATGGTCGGGTATGAGGTTCCCTTGCACTTTGTTGTGGTTTGCTCATCTTCAGCAGTTTTAAAACTGA---TCTTGAAAACCTTGATCTGTTTCC-CTTGGGATGGAAGAAACCTAAGGGAAACATAAAACAAGCCAACAGCAACAATAGCTAAACCAAGCAAACCTGGACACCTCTAATCAACCAACAACTGTATTGCACATTATAAAACACAGTTGGAATTCTTTTCTTCCTTTCTAGTTGTGTGGAGAGCTGAGATGCTAATGGGTCCAGAGTACATTGAGGTAACATTGTA-CTGATGACC--------------TGTAGTCGCTCATCCCTTTtgt-----ggttttggataagtaacaacttctctagactc--agattccttatATTATTGTGCGattat--ctccaaggcattgaagactaattcttggagtgagagggtaacattgtcttataatcttaatttcgaaatacatacatacatatgtatattcagtaccaact-tagatatagcacaaatgtgatattaaaatttcatgggatatggattgggaatcaagtgtttgaaaatcattctttttggggac--------------------------------------TTTGAGAAACATTGC-ATTATTTGACATCCAAATAGATGAAGTGTAAAATATTTTCCAACTCTGAAGTATCA---TGTCTTCTATAAATAAGGC-CGTGTTCAAGAAA-----------------CTGAAAGGTACATAATTATATATGTTAAATAACAATTACCACTATATATTCTTATGGGAAGAtattggatattatt
s HiC_scaffold_1 129346759 3702 + 233722169 TTTAATTTTGTAGATAGTGAAATGAGAATATGATTGAATGTGGTTTACATTTGATCTTAGCGAAAAGACCAAGAAGGGATGGTTGAATGGAATTTAAATAATGTTTACAAGTTTGCAGAATCTTAGAATATGACAAAGAATCACAATTTTCAAATGTCTAAATGTTTTAGCTCTTCACACACAAACATCTGAAGTTTTTT-TTGCATTGAATGGCAAAGTCAACATTACTATACAGCTGTATTGTTTTTACTGTATAGTAACTAATGAAGTGCTTCCATGCATCAAAGAACTACAGTGCTGTAAAGTTAGAAGCAAAGTCACAATATATACAATCATAGGGTCAAAATGGAATAAGGCAACTCTATTATGTACTGCAACTAAATACCATTTAAAACTTTCAAACTCAGTACATCTTTTGTTTGGccaaaataaaagcatcatattGAATTTAGAGTGAATTCATAAGGCTGCTGGACCTGATTATATAAGTGGAGTTTTGGCCTGGACTCTACTCCTCACTATTTGGATGACTCTACACAGGTTGTGTAAACTCTTGGAGCTTTAGTAACCTTATTTGCAAATTGTGGATAATATTACCAGCCTCACAGAACTGGCATGAGAATTAAATAATGTA-TGTTAGCAGTTTTCCATTCAGACAGAGATGAAGCAGATGAACCACGAATATTTTCCACTCTTTCTGCTTTCAATATTCATATAATGATCATAGCTTGGgtcagaaaaacattaaataa-agagttaaaaaa---tctGTTGTGTA-AAAGAATTTTGGATAAAAGCTTTAGAAGAAAATGCTGATAATGTTGGCTGATGGGAAATTTGGGAATTATTATTGGATTTTGCTAATGTGAATTATTTCTACCTT-TACTTCTGtagataatttttatattgattgcTTATAACAACTGATTCACACAACTCAATATTAAGTAGCTTAAGAAGTCTATCTGAC----ATACTGGCTTATTCAATTGGCTTGATACTAATTCTGAGATTATATCCTCTATGTAATTAATATACTGTTgggaaatacagttttaaaagaaaatttagtttcAAATGTCAGAGCTCAAACAAAGATTGAACAAATATTTAGTTTCAGAACACATCATGTGGGACAgaatagcataaaaataaagaaaactttttcaaGCCATTGTCAGTGTAGTA-GACA---AGgtattacattttatttgtgCCTTGATA-GCACATCAGTATAGATAAAAGTTTATTTAGAAATCTTGAAGCAAACTGCAGGTATTGCTTTTCTTACTAGAAACTGAATTTTTCCTCTAGTTTATGTTTTTGATCCCTACAAactgaaggaaaataaatgaaaatttcttttctttttgaatttttgtatttatttttatcttgcaaTAATTAGATATATTGCTTCTATTATGATttcccattctttcttttttattttaaaaaacaaaaaaggataaaaatgatacagaaattcaaaacaaaataataaaaaatcaacactagttaatgtattgcaCATGAGTTACAAAACACATTACTGATCTTGAAGAAACAATATCTGCT-GCCACACTGAAGCCCTGGGCCTCCTGGCACCTATTGTGGAAGGCTGCTTTCTGTCTATTTATTCTCTGTATTTGTTACTTAGAAAAATAGGTGACTAGATAGAAATAAA--TCATCAGATGGCAATGCACCAGAAAACCAAATAATAGCAAGAATATGTTGATCTTCAGGCTTGGTGACCTTTCATGTTTGTTTAAACAGCTTGTTTTAATTAGTAATTGATATCACTTACTCTTATGAACATTATTGACAATTGAAAACAGCACCTTATAAGCTAAGGAATTGGAGAAATTTAATATGAGTGTTTGAGTTCAGTTTCTTTAGGGGG-TTGCTTTGTTCTTGTCATAATGCTTGAAGTTAATGGACAACTAAAATGAAATGGCTTCATGTGTCATACACTGAGTGAAGAGGACTGACAAAAAGCCATTAGTGtccaaggaagaaagacaaaggcAGAAATTCTATCGTTTCCAGATGAGTCCTTACGATTCCCCAAACTCTTTATTAGCTTGACAGACAAGAGTCAAGAATATTAAAGCAAAGGCCATATAGTGCAATTTTAGCCAG-AATATTTTTTATTGGCAAGGAAGTAGAAAATGATCTAGAGTGTTAGTATTATGGACTCAGAGAGATGATCTTTTTAGAGACAAAGTG-AATGGTTTGATGTTGCAAGTGACAATTTTGCCTGTCCTACTAAAAGGAA----------------------------------------------------------AGAACGTAACTCTTCTTACCCAAATACAATTGAGCA-GTTACAAACGGGAAAAGTTGGTTGGTGCTTATTTCTGGAGGTACCCAAAGAACGTTTGAAATAATTCTGTAACTTAGCAAATTCTTCTTAGGCTCTAATAGTAGCACAATGGTTTATAATAAAACCTGATGAAAGTCTCATTATTACCAATTTGATGCAACATCAGGACCATCAACTTTGTTCTTGTTAAATTATT------ATGTGTATGGGAGTACTATCTACTCtcctaaatat------aaaattttaaagtaactcTAAAATC-------ATTCCTTAGATTTGGAAAG--------------------CTATTTCAACCACAGCACACACCTG-------------------ACCCTTGTTTGATCTGAAC---------ACAGAGCTTTTTTAGGTAGGTGCTTGAGAGTT------GGGCTgttg---tcttttattcttttccattagTCAGTGTTAGGttaaaaacaat------------------------gacaat----actGTTTCCTTGGAAGAGTCA---GCCATCCA-------ACCCTTGCTGTAATGGCA---------Acatgcaaacttt-----taaaaa---gttttgaattaGTATTTGAGAAGGTGTGACTGGATCACGTTTCAAACACTTGCCAATCTTTTACATGGAGGGATGCTTACAGAGGGGAA---TCATGGGACCTGAATAAGTCATCAGGTCATTAGAGAGATGATGGCATGTGAGTCTAACTTTAA--TGATTTTCATTTCATCTTCCACAACACTTTTACAAATGATGGTATTAAAAATGTAGATCTGGCTCTGCCTGAGTTATTTACAgc--aaggcaaaaaagaaaaaa---aaaagaaataa-accaaaaacaaataaacaagaatcacCC---TCTACCAGCATCTATATCATATGATGAAAAATATTGTGGATATTGTTTTCCTTCATACCC----TGTGAATAATTGAGATGCTGAAATGCATAGATTGTAGTGAAATAGCACCATATTTGATGGCCATGACATTTGAGTTTCTAGCTGATCAACTAATTAGTTTAAAGGCCTTGAATAAGT---AACTTCTCTGGATTCAGAGATTCCCTGTCTCATGGTGATAATATGCTATCAAG---TTAAAGAGTTGTTCatggaatgagaagaaaaaa--gtcTTACACTCTTAACTTATAAA-------GTAAAGGTATACATTCAGTACAAAATAGACACAGAGCATAGCTATGTTGTTAAAATTTCATAGG-TGGTAACtaggaataaaatgttttaaaaagaatctttAGGGAgacaataatgaaaatttattaaaataatagtttcAATAATAGTTGACAAATACTGCTGTTATCTGACAAATGAACAGACGATGTCTAATGTCTTCTTCAGCTCTGATTTGCCACATCATCTTCTATAAACAAAGCTTTTATTCCAGAAATAATCCTACTGAAGGGCCTGAAAAGTGTACATTCATATACCTTAAGTAATAATTATCATGA-----TCTTATAGAAAgatatttggtattttt

a score=37482
s chr3           143147344 1028 + 160039680 ACAAATAAAAACCAAAATCTAAAAACCTCACTC-TATTTTCCCATGTGAGAACACAGAAAAAGCCTTTGAGGGTCCCTGTGGCTAGAGTGTCTCTCTAATGTGGTG---------GGACTCAGTGAATTTTGAAAGGTTTCCAGTCAAGCTCTTAGGACCTCCTGGGCCACTTTTTGACAG-AGGCAGCATTCTGAATCTTGACATTTCGAATCAGGTTGCCCAACCCGCAAACAAAGGAGAAAGGAATAGCTGAGCTCTCCTGTGAGTGTAGGCTGCGCTAATTACAGGCGCGTAAAGCCCAGCTGTGGTCAGAGCGGCTCATCAGGGAGAGAGGAGCTAGACCCAGAAAGGAAGTGGAAGGCTGGGATGGCTTTCATTCATATTCTCTGCATCTCGTCTGTCAGAGCCTTCACTTCTGCTTAATTATAAACCACATCTCCTTTCCATTTATGAGCATGCCCTTTCCCCCCCCAACACTTAATAGGAGCAAAGGCACTTCTAGACTAGCATGTGGCAATGCGGTTGGAGCTCAGGGGCCAAACTGAGGTTTCTTT--AACATATCTATATGCAAACAAACATTGATCTATAAGCCCATTCTGTCCAAAAAATGAAATGATTTTGTAGCCTGTTCCAAATCCATAACAGCCTTCTACTACCTCATACACAAATCAAATGAGCAAAATGAAACCAAAGGGTCCAAGAACATAGATTTTTAACTTTCAGGGAAATTTTA------ACAGGGGAACCTAATATAATTtatatatatatatgtatatatatatTGTCTCCCTTCAGTATTTCTTTTGTGACCCCCTTTTTTTTTCCTGGAAATCATGGTCCAGATTCAAACCACAAATGTGCTTTACTGTAGCTGTGTGCTTGTTTCCCATTATTGTATAAAACACAAGAATACATCAACAG---GGAGGAAGAGAGATGCTGTAGTAGTAAGTGTACATTGGCCAAAGTAAAACTCATAGAACATCTA---ATTTCATCAGGCTCCAAAATACTGAAAAGTATTTAGAAAACTGTTTTATTTCTTC
s HiC_scaffold_1 129354023 1010 + 233722169 ACAAGCCAACctaaaaattcattaatttcattCCTATTTTTCT---CAAGAAGATGTACAAATCCTTTAAAGATCCCTGCTGCTAAAATGGCTATGTAATGTAGGGTCTGATGTTGGATGCAATGA-CTTTGAAAGGTTTTCGAACTGGTTTTGTAGAGCTAGTGGGCCACTTTGTAATAGTAAGAAGCATTTGGAATTTTAACATTTAGACTCCAGCCCCATAACGTGCAAACAATAGAAGAAGCAA-AGCTGTGCCCTTGTTAGTGCTTCTGCTGTGCTAATTACAAGAACATAAAGCCCAGCTGTGGTCAAACCAGCTCATCAGGGAGAGATGTGTTagaccaaaaaagcaaaagaaggacTGAAGTgttgttcatttttattccttgCATATTGTCTGTCAGAGCActcagtttttcttaattataaactatttctt-tttccatttataagCATGCTCTTTCCCCT----GCATTTAACATAAATGGAGGTAGTT-TAGACTAGAGTGTGACAATGCAATAGGAATTCAAAAGCTATGAtaaggttttttttaaacatagctATATGCATATGAATATGCACACAtaa------tatgtttaaaaa-caaaaggttATTGTACACT-----AAGTCTGTAACAATCCTTCAGTACCCCACAAGCAGgtcaaatcaatgaaacaaaaccaaaggaaacaaacaagaaGATTTTGACTTTCCAAGGAAATTTTAGTTTCAATAGGGGAAACTAATGTAATTTAAagacattt--------------tgtcttttcttgataTTTCTTTTGAGA------TTGCTTTTCCCAAAAATGTTGGTCCAGATTTAAACCATAAGTATACTTTACTGTAGCTCTGTGCTTGTTTTCCATTAATGTAAAAAATATGTGAAGACATCAATAGACCAAAGGAAAACTAGAGTGGCATTAGTAAGTTTATActggccagtgtaaaaattttgGGCTAACTAGATATTTTACTAGGCTCTATAATATTGAAAAGTATTTAAGAAACTGTATTAATGCTTC

a score=30004
s chr3           143149147 2177 + 160039680 ATAGTCACATTTTTGCTGGTTGGCATCAAATGCATTATGCTTAATTATGATGGTTTACTGAGCTAGCATGGAACAGCCTGAATTCAAGGAGAGA--AATGCAATATAGTAGAGTTTCCCTGTATTTGTGAGAATTTTGAAATTTTTTCAGACATGAGGTCTTCAAAGAAATGGTTGCAGAAAATATATCTGAATTATCTCTCCTTC--TTCATCTTGAGTATCAGGAATCATAGCTGACTTGCCAGGTAAGTGTTTCTCAGTTGGTGGCCTGTGTCCTACTGGTGAGACTCTAAATGTGGCCAGgtgtgtgtgtatgtgtgtgt-----gtgtgtgtgtgtgagagagagagagagagagagagagagagagggagagagagagagagagCcttgctatgcagctcag----atggtcttttaacttgagatctgtctgtctcaccctccagttcatgaattctgggattataggcAGGGTTTATTGAACTTAAAAAGAAAAGCACAAAGGAAATGGCAG-AAGGTAGGTGTTGTTGACCCCTCTATCTCTCTATTTCTCTTTTCTGTTGGCAAAGTTACCTTTATCCAGTTGGATAATGGACACTT-GAGATTTAGGGAAATCAG--------------GCCAGATGAAGACAGAAAATGCATGTGAGTTAGGTCAGGGCAGTGA---TGAGACACTGGGGAGGGAAGCATGTGGTCGTTGATCAAGCTGTGAATGTCAAGGTGAAGGGGGCTTGCTGAACAATTTGAGTTTTCTGTGCTTCTGAAATATTTCAGAAAAGCTTACAAAAACTAGAAAGCAGACTCAGGTGTGAGATGGGGTATCGAAGGAGGACAGAAAGGTTAGAGCAAATGGGCACATTTGACATGAAAGTGGGACAGGAGAGTGGAGCTTACAGAAGGGACCGATGAGGCTGAGGGCTAGGAGAGATGGGGAGAATCTACTAAAGCACACTTTGCTATAAAATGCCATAAATCTCTCTAGTAGCCCACATGCTATTATTATCAAAACATAAAAATAAAAGGAATCAGCTTCTCACTTCTTAAGGTACATGATGAATTCGCTGCTTGAGTCAAATGTATTCTTTGACCTAAGTTGGAGTTCTG--TGCCTTTAGTGTTCAGAGTACTATGCCTTACCCTGGAGGGCACAAGGCCATGCATGCAATGAGACAGT---------GTGGAGTAC-----AGATGGCACATTCACTTTCTAGATATCACACTGACACCTTGGGAAGTGGCCGTTGTGACCACCCCCACATACAAAAAT----------GTTCAG---------------AAGCACATA------TGCTGGATCTGGGAACTCAAACTCAGTTTTCCCCACCCTGGCTTCTGTCTCATTCCCAGTACATCACATTCCCTAGACCAATCAGCTTT-CATCTTACAGCTAGAGAAACAAATACAGCCTTACCC---GAAAGGCTGGGGAACAGAACC-----TCATCAAGGTGGCATGGTTTCCCTCTGAGCT---ACCAGAAAATTCTATATCCCAGCCCCAAACTGGGTTCTCAGTTCTCTGCCCATGTGTCTTTCGTGTTTTAGGAAAGTGTGTTTTACCATTTAG-------GGCCCTTTCCTCTTTTCCCCAGTCTGTTTGTGGAAACCAGTGTATAAGCAT-------TTGAAAGTCTTAGTTCT--TTTTGTAACTCATGAACAACACATAGACTGCTTTCCCATTCAAAGAGTAGCATGCTTAGGATATACCTGCAATAAATTCCTTCTGACCTTTCCCATCTCTATCCATAGATGCTTCCTCTGGCAACATGTGAAATT-TTTGCCTCTCTGCATTTTGATGGTTTGTTGAGTGTCTTAAATAGACAGAGCCTGTTAAAT-AGGTGCAACTGAT--ATTTGGTAAGCTCATGCAACCGAATGGTTTCCTGGGAATGGGTGACAACAAGTTCTTAAGTGTGAGAGATGTTACATGAATATTGATAGCA----TTTAATTGAAATATGCCTTATGGGTTACAACCACAGT-GTAAAGGTTCATACAGTTCTATCTCCAGAGAGAACCTGAAGTTACATGGGATGCTTGGATTCCATAATCTACCTGCTACTTTGCAAAGG-TCAAAAGCATTTATTTTCCTAGATACTTCTATTTTCAGTTAA---TGTTTGAGCATTTCCTACCTTTCAATCCCTGTGATATATTTATTTCTAATCCTTTATTTCTAATCTACAAAAATAAATCAGTATAATGTGTATTttccttttcttcct
s HiC_scaffold_1 129355321 1935 + 233722169 ATATTCACATTTTCACTGGTTGATTCCTTGTGACCTATGTATAATTAT----------TGAGTTGACACTGAGCTCTCTGAATTCAGAGAGAGAGGAATACCAGATAGTAGAGTTTCACTGTATGTGAGAGGGTTTTGAAAACTT---GGAGAGAAGATCTTTGCAGACCTGCCTAT-GAAGAAACACCTGGAGAATCTTTCCTTTAGTCTATTTT-----CTAAGAACCACTATTGATTTGTGAGATCAGTGGCTCTCAAATGATGATCAGTACTTTACTGATGGGACTCCACATTTATTCAAGGGAAGCCTCAGGTTTTTATAATAAGTACAGAAATTTTCAAGATTGCTGTGATACTAATTAAACATAGTGACAAAATATCTACAATTTTTAATA---ATCTCAGTAAAACAGACTTTTAATATGAA-----------TCAGAGTGAAAGCAAGGATTTGtgagaaattaaa-------tgataaattcagaaagaaaagtgttgagaaaaatacaggaaagtgaGTGTCACTGGGTGTTctagctctctctttctctttt------gcaaagtTTAGTTTACCCAGTTGGCCAACACATACTTTGAAGTTTTGGAAGACAAGAGAGTTGAGAAGTAGACAACTGAGAATAGGAGAGGGGTTTGCACCAAATCAAGGAAGTAAACTTTGGCTACTGGGA--GACAGCATGAGGGCATGAGGCATGCTGTGTACCt-aagggaaacaaagctttcttAACAATGTGAGTTTCCTCTGCC-CTGAAAGGTTCC--------TTATGAA--------------------------------------------------------GAGCAAAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTcaattcttatcatgaaaggtTAACCCACTATTTTAGTTGAATATGTTCCATTCACCAAGT---ACTATTGACTGCCTTTAATATTCAAAGTACTGCGCTTCACCTTGGGTGATGCCAAGGTACCCA------GTGACAGTTTAGTATTTGTAGAGTGCTCCAGAATCCACACATTTATTTCTTAGACATTTTGTTGAAAACTTGGGAAGTAGCCATTTTATATATAAACtcatttaaagagaagaaaatgagttCAGTGTCTCTTCCTGTTTCAGTGTATAAAAAAGTGTCAGACATAG-AGCTTAAACTCAGATCTTCCAATTTTGGAACTCACCATCTTCCCATTGCATCATATTCCCTTCCCTAAACAACCTTGTACATTGAAGTGAGAGAAGCACACGTAGCCTCAAATATGGCAAGACTGTAGCTCAAGACTAAATGTCATCAAAGTGGCATAGTTTCTCTCAAAAATTGCACAAGTAAACATTGGATTATAGTCCTCAGTTGGGTTACAAAT---CTGCCATTATGGTGTTTAGATTTTGAGTCA-TGTATTTTACCTCTTAGAAGTCTAGGtcctggtttttttttcata---tgttttcaaAGGTCATAGTGTTAGCTTCCTATAATTGGAAAtcagatttctgatttttt---tcataaata---catAGATTTGTTTTTCACAC---TAGTGGAGTGTTTAAAAGAAGCCTGCAGTAAATTCCTTTTGACCTTTTCAATCTATTTCTATGGATGCTTTCACTGATAGCATATTAGTTTGTTTGTCTCTCTGCAT--------TTTGTTGATTGTCTTAAGTAGACAGAACCTATTAAGTAAGGTATAATAGATCCATTTTG---ACTCATAAAGTTGAACAGTCTTCTGGAAATGACTGACAGTAAGTTCTTCAGTTTGAGAGCAGATTTTTGGCAACTTACAAGGCTGCTCTGATTTAA--ATGTCTTACAGGTAAGCTCTATAGTGGTAAAGATTTAAGCAATTTCATCTCCAGAGA----CTGAAATTACTTGACATGGTGGAATTCCATAACCCACCTGCTGGTTTTGAAAggctggaaaacattttattttgcagaTAC----ATTTCCAATGAGATTTTTGTGAGCATTTTCTACCTTTGACTCTCTgtgatacatttatttttgatgtaCT-----------------ATAAATCAGTGTaa-----atttttttactatttct

a score=151356
s chr3           143158377 6009 + 160039680 [encoded data, 6387 characters]
s HiC_scaffold_1 129365878 5777 + 233722169 [encoded data, 6387 characters]

a score=127066
s chr3           143169301 5149 + 160039680 [encoded data, 5574 characters]
s HiC_scaffold_1 129373809 4817 + 233722169 [encoded data, 5574 characters]

a score=42574
s chr3           143185593 2092 + 160039680 TATCTGAGCCCTGCTTGGAGATGCTAGAAAAAAAATGGAACCATCTTTTTAGTGTTTCTTCCAA-----------------TAAAATAGAAATGTCAGTTGTCAAGCTATATTTTTAAATGCTTGGTGGATTTTGAATAGGCTAACATT----ATCCTGAAGATATCAACTTCTTTACTGTAACTTTAGAGTAAGTGAAAGCTGAATTGTCTTGTAAAGGGACAGGAGT--ATAGCGGTAAGACTTTA-----ATCTTCTTGTTGGTCATTTA-TTGGGTAAGCAATTTGAATCTAATTTTGTTTTTTTCCTCCACAATAAAATTTGCTAACATTACTGTCTTCCCCCAAGAAAAGCATTGCCATTAAATAGTGGTATAGGATGATATTCAGGTGGGTCTA-----TTAGATGTCTAGACAAAAATGTAACATATCTTCACTGCCATGCATGTGACTTTATGAATTCCTTTTTCT----CTTGTGTGTTGCATTTC-ATAGATTTGTATCATTAAGGGAAGACATACCATCTTTGTGCCTTAATTTAGAACAATTTTTTTTATGAATTAAGTATTAAACATTTTTCAATAGCATAAATTAAATGATTGGCTTGAATAAAGACTGAATTGAGGAA-----------GTGTTCACATTAGCCTTCTCTCTTTCTTCTCTGCTCACAAATCCTGAACTCTTTAGTATGCACCAGAATGTAAATTCTTTTAGAATCTTCTAGCTGGTTAAATGAAGATTTCCCTGTATATTGTTCTTCGTGAAACTTTTAATCCACTTTTCCTTTTGATGGGAATGGGCATAAAA--TATGATTTCAGATCCATATGATTTCTCTTTATTAAATAACAATAGCTCTTGCTTTAATTAAAT-----------------------TACAATTTTCAAACCCTGAAACTTTTCTGAATTGTGGAACCATTCAC--TAATCCTTAATTTTTATAGTTGTCATGGATACGAAGACTCTCAAGAGGGAAAATTCAAATGATTCAAAGAAACTTTGACATTTCTGAA-AGTTATACTACACCTTTTCAGTTGGCTCTAGGAGTAGACCTTGTTAGGAGTACAATGTGTGGTTTTAAGGGTTGAATCCTATCACCTGTTCCTGACCTGTCCCCAATGACATGCGAACCATGACATGATGGCAGTAACTAACAAGAAATTTAAATGTGAATTTTATTAATAGCTAGAATGTGCTCATTACATCCAAGCACAGGCCTTGCCAGTCAGACAATGCTTTCTCTAAGAGTTAGATCTAGCAACCTAGGAGGATAATCCAGCTCTGGAATCTAGAAATTTTGGAAAAGAGGTCAAGATCTTCTtgtatcaagttgcgttctacaggaactacactctaggtaagtgtagtttagtgtgcaaggcagttattagtgggtgcccata-----gagtccacaagttaaaggtggaggtgcaggtaaataagagcaga---aagaagacattatgctataat----------------atactca-------------------------------------cagtaa-caatcttggcaaaatgcacaga-----------------------------------------------gagtttgtagcctggtatggaccttcagggttttcctgagttgagacaata-ttgccagaattttctgtttttgggtcaactcttcacttcctgtgagttagttgtcctacaaagttagggattagagatagcactctataaacaagagagtcttcaaatgtgctagtattgaaggccattggctggtggcaactctcatagttggATTCCTTTGTTGAAGGATGTCTGAGTAGTGAGTAGTCAATCA---TGTCCTCTAAGAGTCCATGTGGACACAGTTGGCTCCACTGTTTCATGGAGTTTGTACTTGTAAACTGGAGGACAGATCCTGAATAGCTCTTCCACTGTCTGGGCAAAGGAAGAGCACAAAGGGCCCAAAGCTTAAATGTATT---------CCTTAGTGTGACTG----------------GCTCTGGACTCCAACGTTTCAGTAATAAGGCCAGCCCCAGTTATACCCATTACAAGAATCTTACAGAGTGAACAGACAGTCATGCACGTTTAGTGTCCTGT-TCA-GCTTTCTCCTATAAACAGAGGCAGTATGACAAGAGGAAATAAAACTGTCCCGTGATAACTCT----GCCCAATCGTGCTACACTCAT-AAACCCTTTCCATTTGCCTGGCCTTATTAGGTCTGAAAATTAG
s HiC_scaffold_1 129391016 2170 + 233722169 TGCCAGGGACCTGCATGGCAATGCTGGGAATAA--TTAAAATACCTTTTT-GTATTTCCCCCAAACATCACTTGTCTTTCACAGAACAAAAACGTCAGCtgtcaaattatattttaagatgTCTGCTGGATTTTGAACTGGACAGTATGTTTGATGCTAAAGACACAGAATC--------------TAGAAGAAG---ATGTTGAGTTACCT-GTAAATTAAAGGGAGTTTGTAATTCTAAGACGTTATGATGATATTCCTGTAGGTCATGCAATTGGACAAACAATTCAAATTCGATTTTGTGCTACTCTTATG---TAAAACTAGCTAAAA--AATGGACTTGCCTTGCAAAGACATCACC-TTGTATAGCCACAGAGGACAATATTCAGGTGGCTATACAGTATTAGATGTTAAGATCAAAAAGTAAGGAATCCTGATTGCTGTACTTGTGGGTTTACAGATTCTTTCCTCTTCTACTTGTGCGTAGAGTTTTTGTAGActcataaaattagaaaaaggaaTATAATCTTTATGGTTTCATATACAAAGAATTCATTAAT---CTGAGTGTAAAGCTTTCTTCAGTAGCACAAATGAACAGGTTTACTTCAATAAATATCAGATCATGCACCACTTGGTTTTGGGTGTGCATTAATTTTATATCATTCTTCTCCTCTTAAAAATTCTGGCTCATGTAGTATGCATTGAAATGTGAATATTCTCACAGAGTTCCA--------AGTAGGAATTTCCCAAGA-ActggtcttttaaaaattgaatagcTATTGCCCCTTTTGATGGGACTGGATATAAAAGATATTCTTCTAGTTATGCATTGTTTCCACTTACTAAACAACAA-AAAGCTTGATTTAATTTAATCTAATTAGTTAAATTTAATTACTTAAATTCCTCAGTCTCCAAAAATTTTCTGAATTTGGCAACTGTTCACACTAACCCTTTTCTCCTATAGTTGTCATGGAAATGAAGAATCTCAAGAGGCCAAATTTAAAAGATTTGAA-AAGCCTTGACATTTCTGAAGACTCATAGTACATCTTCCTGGCTGACTCTAGGACTAGGCCTTATTAGGGGTATAGGATGGGAGTTTGATGTCTAAATTCTAACACCCACTCCTATTCTGT-CCCAATGACATTTGAGCTATGACATGATGGCAATAACCAAAAGggaaatgaaatataatttttattaatagctGGAATGTGCTCATTACATCCTGATGCAGTCCTTTTCTGATAAATGAAGCT---GCAGGAAGTCAG-----TCAACCTAAG---------CAGAGTTG---------------------GAGGTCAAAGTACCATTGATTCCTATTGAGTTCTCCAGGAACTG----------GATTAAAATGCAATATGAAGAATGTTTACTAGTGAATGCTCATGAGATTGAGTCCATGAAATAAGGGAAG----GCAAAGTAGCAAGACTGGACAGAGGAAGAAGTTAAGCTGTGATTCAGGCCTTGTGTGGCATCCTTGGATGACTTCAAGGggaattgatttatttatttgaaaccagtaatcaaacttaggaccttgcacttaccaggcaggtactgtgcccctgagctataacTCCAGCCCTTCAAGTGGAGTTTAGAA-CTAGAATGAACCTTCAACGTTATTCTGAGGTGGGCTAAGATTTTTTAGAATTTGCTTTTCCTTCGTTA------------CTGGGTGTGGGCTGTCCTGGAAAAGAAGGGACTGGGGATGGCTCTCTGTAATGAAGGCAGTTCCCAAAGTAGCTTTCATTAAAGGCCATTTGTTTATAGCAATACCAGTAGTTAGATTTCTTTATTGGTGGA-----GAAT-GTGAAAAGTGTATCAGAGTGCCCATCA--CACCAATATGGGCAAAGCTGACTCTCCTGATTCTGAGCGACTGTGCTTAT--ACCAGAAGCCAGATGCAGAAGA---CACCAGCTGCCTGCatgcaggaagagaaaaaaag------agcttGGATCTCTTTAAAGTCACCGCAAACATGACTGCCAGTTAAACGTGATTGCTCTCTATCTGAAATTATAAATACAGTGGTTAGCCACTCTTGTATTCA----GGGAATTTTAGGGAATGAACTGATTGAT-------TATAGGGCGCAGTCTCACACTTCCTTCTATAAACTGAAGAAATATGATAAGGGGTGTAAAGAAAGTACCATAACAACTCTGTGGGTCCAATCA--------GCATGagattcttttcatttatatggtctttttaaaaatgaaaatcag

a score=43870
s chr3           143187946 1982 + 160039680 TCTAAAGGGTGGCATCAACCTTTAATTG-TTTAAGTGACAATCACAATGGGCCTTC-AGCTAGAGTTTA----TTGTAAACTTTATTGTTGATCTTATTTTGTTTCCACACTGGAGTGAATGTCTATGCCTTCTAGTTTGTTTCTATTTTCTAAATCTGGTGTTATTCAAAAATACAGAACTAAAG-TTTGTGGTAAAGAATAAAGACAGTGGTAATAGATTAGGTGGGTGGTCGTcttccttccctgtcttcctcccccttcctccttccctctgtccctccctccgtcccttgcttcctttccttcttccttctttcctttcttTTTTGCAGAGGGTATTTGCCCTCTGCCTTTTGTTGTAGAGATTAGT--GTTTCCATTTAAGTATGCTCCAAACTAATAGAAAATTATACTGAAAATATTTTAAAACTGTCTTTAAATATATCTAGCCAAATATAGCCTTTAGATATCACTCCCAAGGGTGTGGTTTTCA-TGTCTTCAGGCCAAATCTGGGCTATT--TTACTTTTAAAAAAGAATCGTTGTACAACTAGAGTAT---------TTTTAAATGTGGCAGAGTTCTGGTATATATATCTGTGCCATTTCAGTAACTATGAAATGCATAAT-GTCATTAGAATTCTCAGAAGTCAATGATGCTAAAATGCAGTAACACCATTACTTCCTATGTTTAAAGATTacacacacacacacgcacacacacacacacacacacatgcacacacacacatgcacacacacacacacacacactcacacacacatgcacacacacacacacacacactcacacacacatgcacacacacacacacacacactcacacacacacacacacacacacacacacacatgcacacacacacacacacacacacacacacacacacacacacacatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcacgcacacacacacacacacaTATGTCCTTTATGACATTGTTGAAGATTTGTGACTTGGTCAGGGTGTCCTTTTCTGTCATGTTTTATCAAATGTTCATTTTGAGCCAATGTGAGGAGAACCG-CCGAGCTGGTCATTAGTAGATTAGTCGTCACTACAAAGCCCTGTACTGGGGACGAGCTTGTTTTTACTTGCAGGAAGAGAGTTCCTCTCGGAGAGCAATTACAGCTGATTGACGTGTTTTCATGTGCCTCCAGCCCCG-TGT-TTTCTTTCCCTTGCTCACTAAACAGGCCCAGATCAAGGACTTGGATTTTACTTTTTTTTTTTGCTCTTGTT------TCATTGCTATTAACTAAAATCAGGATACCAGAGACACCAGAGAAAAACTTAGAAATCCTGTAAAGTGAGACTTAAAAGAAATGATAAAATATGTATAAAGAGTTGTGCATTTTGTTGCGGTAGGTTGCTAGACTGATTCCGGAGTAGAGGTGCTGAAAGTCAGTTGAAAGGCAAGAAAATGACAGAGTTGGATGTTCTAATAAAGGAAGCAATTTGTACTTTGTGTGCAAATGTAGCTAATGCCTCATTCCTCTAAAGGATTcagagtgtggtgttactaggaaagaaaagctgggctggaagcttacattcttctctcagacttgcttctaaattataaataa-tcttgaacaaggcattttacttttgtggattttttttttt---ttgacaaacaagagaggataaaggtgatgtctacagattctttaaac----------------tcACTTTA--------------------TTATGGCCCAG--AAGGAGAAAAAATATGTGGATGGTACCTTATAAGTACCATAAGTCGAA-GACATTGCATCAAATCCTGACCCACTGAAGCAGAGATGATACCTCTGTCCTGCAACATTCTCAGGCTATCAGCTTCCTCAGGACCTGAGATTTATCTGACCAGTGTTCCTAAGCCTAAAGATGGCACCTTACCTCCATACAATAGAAGCTCTCTGAAATACTGTAGAAATGAATGATTg
s HiC_scaffold_1 129396478 1656 + 233722169 TTTGAATAGTGGTATCcacatttaataaatttaaatggaGATTAAAATGGACTTTTTGGCTAGGGTTTACATGTTGTATGCATTATTCCCTTACTtatcctaaa-ataaagaaaagaaaagacttatGCCATCTAGTTAGTGCATACTT---AAATCTGGTACTAT-AGAGAATATGATCCTTCAGATTTTGGGTAATGGATATAAGCAGTGAGACTAGATT---------------------CCTTGACTTTCA-----------------------------------------------------------------------TTTTGTACTTAGCAGTTGCCTTTTGCCCTTTGTTGCAGGGATTATTAAGTTTCCATTTAAGTAGACTCTAGAATAATGGAAAAGCATATTGTAAGAATTTAAAAGCTGTCTTTATATACAGCTAGCCCAAAATAGCCTTCAAATACAACCCCCTGGGATGCAGACTTCACTGTCTTCAGGCAGAATCTGGCCTATTGACTATTTTTAA----GAGTTACCATGCAAA-AGAGCAGAAGCTTATATTTTTAATGTGCTAGAGTTAATG-ATATTTATCTGCAGTttgcaagaaactaagaagtACTTAAAAGctatttgtaatcccagtacctgtTAATGATATAATAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTGTGTATACatttacacatacatacacatatgcatatacattgaTGT---------------------------------------------------------------------------------------------------TACTTATGTATGCCCTC-------------TATGCCATTTTTGTAATTGTTTAAAAGCTTTGACTTGGTCAGGCTGTCCTTTTCTGTCATGTTGAATCAAATGTTCATCT--AACAAGTATGAGAATAACAAACCGAGCTTGTCATTAGTACATTACTTGCTGCTACAAAGCCTTGTGTTCAGGATGAGTTCTTTTTTACCTGCCTGAAAAGTGCTTCTCTTGGAGAGCAATTACatctgattgacatgttttcaTGTGCCTCCAGCCctgatgcatttttttctttggcaCACTAAACAGGCTTAGATCAAggactgttatttta-ttttattttttgctcttgttgttatTTTACTGCTATTAACTAAAATCAGGATACCAGAGATACCAGAGAAAAACTTAGAAACCGTGTAAAGTGCAacttaaaacaaattataaaatatgtataaagagGTATACATTTTGTTGTGGGAGGTCAGTAGACTATATCTGAGCTAGAATTGCTAAAAGTCAATTGAAAGGCAAGAACACAACAGAGTTAGGCATGTTAATGTAAGAAGCAATTTGTATTTTCTGTACAAATGTAGGTattatcttatttctttaaaaagtactcATTGT-GTGT--CTTAGAAAGAGAA----AGCTGGAAAC--ATGTTCTTTTCACAGTTTTATGCTGAAGTTGTGTGTAATTTTTGAACAAGGCACTTAAC-TTTGTGGAACTTCTTTTTTAACATGTGAAAGAAGAGAGGTACAAGATAATGGCTAT-TATTCTTCAAACTCTTAACATGCCATGATCGTGTTAATTGTTTCTCAGAGATGAATTTATGACACAGGaaagttgaaaataaatgtgAGTAGCACTTGGTAAATACCATTGCACGAATAACTTTATATCAACT-CTGGCTAACAAAAACTGACAT--TACAACTACATTGC--CTCTTTCATACTA-CAGCCTTTTAGGAACA------ATATCTTATGTATGTTTATAACCTTAGTGATGGCTCTTTGCCCTCCTACAAGGCCGTTTCCCAAAAGTGTTTGAGAGATGAACAATTG

a score=30010
s chr3           143190708 1721 + 160039680 GTTCATCCTCAGAGTAGTACTGATAGCAGTAATGAATCCTGCATTCTTCCTTCTTATCTTGACAATCACT-ATTTT------CTTTTTCTCAGCCCCAGCTGTAGCCAGGAGCCATGATAACC-AGGACAATTCCTATGATAAAGCCCTGTTGTGGCTTTGATACTAGAA----TGATCTTTGCAGTTGCTTTATGAGAACAACATACTGAATCTGCTTATGTTTAGGGCATAGTTACCAT-CTGAGCTCCAGATGTCAACTTGGGTTTGTTTTGGGTTTCTATGCTCCTATGTCTCTGCAGGGTTAATTTAAAAAGACTGACTCTGTTATCTGCTTCTCAGCATAGCTGGCAGAGTGATTAGCAGGTATGTGGGCTGATTAATGTTTCAGTGTTTTTACCATGCCTTTAGGGAGAACCTGATGTTGCATCCTGGCTCTGAACACCAGGAAATTGGGCTGGGTCATTTTTCTTCCTAAATTACCTTTACAAATTTTACTCTACTTTGAGTTTCTGTTTCACAGAAAGTTTAGGATTTTGTAGTTGTAGTGGCATTTTATAACAAGATAACCCTCTTCTCACA-TTAGCAAGCATATATCAGATGGCTACCGTATGTACATGTACTTAGAAAGGCTTCGAATGCATCTGCTGTGAGGCAT-------------TCCTGGCTTTATGGGAAGACATGTGCATTTTCTTCAGGAGCTCATGTCTCATGAGAGT--TAAGCCAGAACTCTTAACTGTGTTAATCAGA-AATATGATCATACAAAGACCCATGACAC---AACCAAGTGCTATGAGGAAAGAGTATGATTCTGGTCATCACTGTCTGATAGAC----AACCAGATATGCTGGCTTTTGTAGTTATTCGTACCCAGGGTTTTGCTGTGGATTAACAGTTGAACCACACTTCAAACAATAAGATTTTCTTTATCTAGAAGGAGGAAACAACATGGGACCAAAAGCATGTGTGCTTTTGAGTCACTGGTGTAATAGGGTGTGAGGGGAGGTGGGTGTACCACATGATTGCTCATGGCTTGGAGAGATGCTGAGCCAGATGGACTTAAAATAATCAGCAACCAGAGACTGCCATTAGTGCCTCTTGCCCCAGGTTTTACATCCCAAAGATTACCCAATGGAGACAAAAAGCAAACAAAATGAAAAGTCGACCCTTAACCTAT----------------------TTAAGTGTATTTCTGCTCAT-GCAGTTAACAACTGTGAAC---AAGGATTCGGAACATGAAACTCACTGCCATGCA----CTGCTTTGTCAGCTTTTTGTTGAACAGTTCGGTTAGTAGTTTTGGGTTGTCCTAAAAAGAGCTGGAAATTAGATAATACTGGG---CTCACATATAAGCATGACAGCATTCAGAAAGGAATCTCGATGACCTGGATTGACTGAAATCCCA--CCAGGCACACACATAGCTACT-TGTCCTCCTTGTTCCTGTCAGCTTCTG-CTTGTCTCACCATGG--TCCTGTGGGACTGGACCTGATCTCGGGTGGGGCCTATGAGCTTTTGTTGATCTTAGTAGCTATGTGTCAATGTGTGCGAAGTCTATGAAACAG--AGACATTAGC-CTTAGAATGGATGTGTTTCCTACTGAA---ATTACTCTAAGTTTGTTGTTGTTTTGTCTAATTTTTGTTTTTC--AGTAGGATTTTGTTCTTTGCTCCCATGTAGTTCAATTTGGACATTGTCTTTGCTATAGCTTTGGTTTTCTTGTTCCCTTTCTACCTATCCATCTTCCCTGTCCTGCCTTT
s HiC_scaffold_1 129399135 1536 + 233722169 GTTCATAATCAGAGTGGCACTGAGTGGAATTATAAATTCTGCTGTCTTACTTTTTATCTTGACAATTTTTTATCTTGACACATTTTTTCCTAGCCTAATCTGCACAAATTAGCCATGGTAACCCAGGATAATTCCTATGATAGAAATCTCTTGTGACTG-GATAATGGAAgaagtgatttttgttgttgcttcaaGAAGATA---TATCCAATGTACTTGTGTTTGGGGTGTAGTTACTGTACAGAACTCCAGATGTCAAAATGGATTTGTGTTGTGTTTCCATGCTA--ATGTCTCTGCAAGGTTAATTTAAGAGtactgacttctttcttttttgctcaaATTGAGTGTAAGAGTGATTAGCAGATATCTGGATTGATTAATGTTTCAGTGTTTTTGTCACTTCTTTAGGGAAAGCAGAATGTTGCAGCATAGCACTGAGCACTAAGAAATCGTGATGAATCGTTTGCACTTA-AAATCACCTTCACAAATTTTACTCTTCTTTGAGTTTCCTTGTAACAGAAAGTTTAGGATTTCATAGTTATGGTGGCCTTTTATAACAGAATAGCTTCCTTCTCACATTTAACAAACGTGTATGGGATGCCTACTGCATGTGTAACTCTTTATAAACCCTAAAATTGTAGGGAATAAAAGGTATAGCCTACAGGAGCAGCTGATTTTATGGGAACACAT-TG-ATTCTCCCAGGGAATTCTAGTCTGGTGGCGGTGATAAACAATTTCTACTAAGTGTACCGATTATATAATATGAATATGTTATGGGTTGTGACACAGAAGCTAAGTGATA-------------------TGGTTATTACCGTTGGTGAGGTGGTGAGCCAG------TGGCTCCTG-AGT------------GGCTGTTACtgc-----------------------------------tttt---------------------------------------tgtgtatttttga--------------------------------------------aattGCTTATA--TTGCAAAGATTC----CCTGATGTAGATGAAA--------ATCTTGAGACTA---------------ACTCCAG---------------------------------------AAACAGAGT----AATTGACCCTcaacatatttttaataatagtaTTTATCTATTAATTAACTTTCTGTTCATGGCAGCTAGGGATTGTAAACTGGAGGAATATGCACTGTGTATCTCAGTG-TGTGTAATTTCATTTTTGTCGCTACATTGTTGAACAGTTTGGTCAGTGATTTC-------------AAAATCTG----------AATTCTTGGTTTCTCTC-TGTTAATATCACATTTTTTGCTAA--AACCAC-----CCTCCACCAACCTGACCCTCATCTCAGACTTGGACATGCTTGCTGTGCCCTGTACCTACCTGTGCACCTCTGATTTGTCCCATCTGGGACTTATATAGTGTCAGTTAAGCTCTTGGGTGTGGCATCTAATCTCTCATTAATTCCAGAGCCTGTGTGTCTGTCTTTATAAACTCTATACAAAGGACAGACATTAACGCTCTGAATAAATACATACCCTACCAAATTGTTTCCTCTGAGTTTGCTGTCTTTTTATctgctttgtatttttcaaaatagtttttcctttttagtttttatttacttaaatctATCCTTTTACCATGCtgtaattttagtgttttttctAACTTGaccctttttcttattcttttatcttccttt

a score=45246
s chr3           143192735 1568 + 160039680 TCTACTGAATGACATTACTGATATATATATTTTTAGCACTTCAATTAGACATATAAACACTG---TATGATACTAATAACTGCATAGGTTTCTTTGAGCCCTTTAGTCTCTTGTCTGCAGTACATTCTGTAA--TGAGGGACACATGTTCCCCATCAGTTTAGAGGAACCTATAACCATTGTCTAATAAACCCATGATGCTACTTCATTCCTTTGCTAGGGGCAC-----------AGAGTCTTCAAATTGGTTCTAGTTTCAACCTCTTACATTATCTTCCATCTATTTTCCTTCACATAAA----TAAAGCCTTCTGTCCATTGAGGTTTGACAT-TAGTCACTCCACATT---GAGTCTTC----TAGGCGGTTTTCCATTTCTCACTTGAAAGTTATATGAAAATTTAGCTTTTTCTCTTTACTAGACTTTTCCT--------------------------------------------------------------TGACTTTAAT-----------------------------------------------------------------------------TTTTGTGTGCCATAGTTCTT---ATAAAATTATTTGAATGAACTTT--TGCAGTGGTTTTGTATTGTTGCATTGAAACTATTCAAAACAATGTACCA--GTTCTGTCCCATGTTCCTTAGAAGTCAGTT----ACTAGAGAGTTT----------CAGGTATACTGGCTATCTTACAATAAA-TTAATCTATTCCATTTAG-ACTACACAGGTATTTCTGAACTGGCCATTTTAGCACATGTGCACCAGTGTAAGCCAATCAGATCTTTATGGTGTCATTAGCCTATAACATTCTAGTTCTTATGATTAATGTGCCAGCCTAGACCTCATAAAACTCACTGTTTTAATTCATCTTAAGACACCTTCCCTAACAAGCCCTCCATAGGCCTAAAGAGAT-GGCCCGAATAAGCATGTGCATTTAGATGTAATCTTCATTCTTAAAAATGCAATGAGCG-AGCCGTTAATTAACTTATTATAATGCCATAAATCCCAGCTCTAGCCATGACCA---GATCCTCCCCCACCTTTACCAAGAGCATTTTCATTTATGATGAATTATCCCCTGGGTCCTTGAGGCAGAGTTGGGTGGCCATGCAGAACTCCGGGTCAGACACAATAACACAATCCACATTGCTCAGTAATGACAAGGCTTCTCCTCCCACCCCTTGCCTTCCTCTGCTTGGGAGCCTTCATGCCTCAGTGAGATCAGCAGACTCTGATGACAAAATGAGGGCGTTACTCCCTGCCAGACTCCACTTCTCTGGAAAGTAACACTTCTGATGATTTGTATGTGGGTAGATGACCCAGGAAAG------ATTCCTATTTCCTCCGATAATTAAAGCTGATACTTTGAATGCAAACTGAAGTCTGAAAGATTTGCTGATTTT--TTTTTTTTAATTTTCAAGATGCTTTTCACATAAAATACATACAATCAGAAACTGCCCCTGGTGGTACTTAAAATTTTAATTTCTTT--TTAACCTT-CCCCTATGCAACTCAATGTACTCAACTCTTATTAAATACTAGCTACTAAAAAAAAAACATTTGGATCTTCATGGATGGTAAGAATTCAGCTGGTAAGAACTCTACT--GAAATTGCCCCCAAATTTGTAACATGTGGTTCACTAGGCTTATTTTAAGAAACCCAAATCTTTAGAAATATTATTTTGTTATGAATTAA
s HiC_scaffold_1 129402958 1733 + 233722169 tttattaaatgacattt------taaatttttttagtatttcatttAGATGAGTAAAAACTAGGATAAGATTCTTAGAATTACttggattattttaaacatttt--tctcttttataaattaGATCCTATAAATTGAGAAAGATCTGCTTCTCGAAAGTTTGAAGGAATTTGAGGGCATTTACTTGGAAATATATTCTggcactgaattttttttcttgggatatgGCTCTTAGATAGCTTTTtcaattaatttcaatttttcacCCATTGTACcaactttgatat-ttttattttacataaagcattaaattcagcaatgttttaaaacttaacaCATAACCATGTTATAGTCTAACATCTTCATTATCTGACATTTtccatttctcattttaaaattctgtggattttttacttttcctcttgATTAGATTTTTCACCCAcacgccagggatttagctcagtggcaaaggtgcctgtcttgtaagcatgtggtcctgagtgagttcaatccccagtaccaacaacaacaaaaagatgcaCAGATTTCCCCCATATATTGTCATTGAACATTTTCACTCTGCTTCTTTTGTGTATgtactagttttttaaaaaaacttttttgggCACATTTTGTTGTAATAATTTTGTATGACTGTCTGGAATCAATTTAAAACAATGagtcaaggttttttttttcgtTTATTAACCTGCTGTTCACGATTTCAGAATCTTCCCAATACTCAGGTGTGCTGGTTATTTTGGAGTGGAGTTAACTTTTTCCTTGTAGCACTGCCTGGATATTTCTGAAGTAGAAATTTCAGcgcatatgtgcatatataaccCAGTCATATGTTTAGGGCACCATTAGCCTATTATACTCTAGTTCTTGTGATTAATGTGTAGGCCTAGACCTCATAAAACTCCGTATTTTAATTCATCTTAAGACACCTTCTCTAACAAGCACGTGGTGTGCCTTAAGATATCTTTCCTAATAAGCGTGTACATTTAGATGCGATCCTCATTCTTTAAAATGCAGCGAGCGCAGCAGTTAATTAACTTATTATAATCCCATAAATCCCAGCTCCAGTCATGACCATTGACTCCTCCCCCACCTTTGCCAAGAACATTTTCGTTTATGATGAATTATACCCTGGGCACTGGACATAGAGGTGGGTGACCATGCAGAACTCAGGGTCAGACGCAATAACA--ATCTTTGCTGCTCGGTAATGACAAGCCTTCTTCTCTTATCATTTGCCTTTTTGTACTTAGGTGCTTTTATTCTTCACTGAAATCAGGAGGCATTGATGACAAAATGAGGTTGTTTCTCTCCTCCAGATTTCAATTCTCTGGAAAGTAATATTTAGGGTAATTTGTATGTgggtatatgtatatgtatagcaTTAAATCACCATTTTCTGTGGTAATT-AAGCTCA---TTTGAATACAAACAAAA---TGTAA-ACCCagtggttttacattttttaaaaatttgtaatgcTTTTTACATGGAGGGAATTCAGTTAGGAGTTGTTCTGGCtactacttaaaattttaattttttttcttaaccttgtcaatataaaattttaaatattt-ctttttgctgAACAATGGCCACTGACAGAA----GTGTGGTACCCTACAGAT------AATTCTTTTCTTGTG-ATTCTATTTATAAAATACCCTTA---TTATAACATGTGATTCAT--------TTTCAATAACCTGGAGTTTTGAGAAAGTATAGTTT-TCATGAGTTAA

a score=14404
s chr3           143195922 674 + 160039680 ATTTTACTGTAAACATTC-CAAATAAATGTTTTTACACATTTTTTTGTT-AATAGTAAGGAG---GAGTGTTGGGAAAATAAGTGTCTATGTGTTC----------TCTGCTCA-ATCCCTTTCCTATAA-----AGTCCAAGTTTCTTGGCAAGCCTACAAGGTATCTGAAAACCTATCTGTAGTCTATTTCTCTTCCAGATTTATACCAATAC-----GATGACCCTTCATTGTACAAGCTCACTTCTTTGTTTCAAAGCCTAATCT----CCTTTCAAATCCTTGTACTAGTTCTACATCTAGGGCAGGTGCCTCTA-AGTTTTCTAATTATTCAAG--------------AACGCCCAAACTACATATTAATCCTTCTTTCCTCTCTATCTATAATTCTCAAGTTTTTCATGAGCAAAATTATTTTCTCCTTTGAACCTCCTTACTTCATTTACTTCACTGAATGCTTAGATTATGGTGTTTCTTGAAATCCTTCCCCTCTCTTGGTTAGTCAATCATGCCATCCTCAGCAGACAAGTACAGGATGCAAGGCTATGTGAGCAGGACACT---CCTAGTTGGTCTTGTGTGACTTATCTTCTTGTGTATTTTAGGCATATGGTCATGATAAATTTTATCATGATAGTAAGAAAACTAGAAGCAACTATGTGCTTTGCAGGGAATTTGTTAACTAAATTA-AATTTATTCTCACAATAGAA
s HiC_scaffold_1 129407832 687 + 233722169 atattgttgTAAATATTCGCAAATAAATGTCTTCACACATTTTTCTGTTGAATCTTAAGTAGTGTGAGTGtaataaaaa--agtataattgtGTCTAAGGAGAACTTctgcccttctttctttcttacaagATTAAATCTGAGTTTCTTAGTATACCTACAAGTCTTTTATAgtc--------agtttatttcttttccagttttacATCAGTACCCCAAAATG----TACACTATATTGACTCACATGTTTTTAAGAAACAGTGGACTTCTACCTCTTATTTCTTGCTGCT--TTATGTACCTGAAGTGCTTGTCTctgcaattttctgttttgtcaaaTTTCTAATTACTGTAAGGTTCATCTTAAAtgctaattcttttctt-tctctgtgtatcATTTTCTAATTCTTCATAAGCAAAGTAATTTTT--CTTTGGTTCTCCTAA--------ACATCAGCAATTTTTTAGATGCCAAAGTTTCCAGAAAGTCTTTCTATCATTTGATTA-TCAA-------ATCCTTAGTAAATATCTACTGGGTGCCATTCTCTGTAGTAAAGGAACAAAACCTAGCTGCCCTTATGCAGCTTCTGTCTTTCAACAGTTTAGTAATAtcttcattgcatttttt-ttgtaATGTTAAGAAAACTAGAAGCAGCTATGTGTTTCACAGAGAATTTGCTGAATAAATTATGGTCCATTCTCATAATACAa

a score=74751
s chr3           143197807 2269 + 160039680 gtttgacagagccagtcttgggttatggctgttatgctggcaCGCTCCTTAGAAGA--CCTTCTTTCACTTGGCTACGGAAGTTAGCCAATGGAATAAAATGATTTATGGTAAGA-CTGCAGATACTTGTGAGCTGGGGGGCCTTTTCAAATTGGCTTGAATAACTAAATGAAACTAAACTTCTC-GATATATCCCTTAAGTCAGAAAGAAATAGCAAAATAATTGTCATGGCTGGGAATTAGGCTTTCATTCCCATGTAGGGAAAGGGAGCTATGGGTCAGAAGGGGATAAAAGGTATTTTTAATGTGGAAATCCATCTTATTAAAACAGTACGTTTAATCATTTAAATTAAACCATACTGAACCATAATGGAATGGTAACTACTCTGCTCTTTGGAGAAATTCTATTGATTTAAGATTATTAAAAAAGCTTAGGAGGCTCATGACTGTTTTTGGAATTCCTTGTCATTTATTAGCATAAAACAATAATTATCAAATTATGTGGTATTCTTAGGAACAACCCTTCAGAGCCCTGGAAACAAAATAGCTCCATT-GTATCAACAGACTGGATGTGTGGCTTAGTTTTAATTGCACTTAGGAGAACCTGTTTGTTTTTAACATTTGAAAGCCAGTCTAAATTGTGTCCAGTGGGGGCACTTAGAGTAGCGGGCTTTGGCACCTGCCTCAGGTAAGAAAACTTTTTGTTTATTTCATTAGTGGCTGATGGTTTGACAGAGTGTGGCTTTCTACTTACTGCACAGAGAGCTGCCAGCCATTCCTGCCGGGAGAAGCCAGGATAGGACAAGCTCTGAG-TTTGGAAGGAACTTATTATGCCTTATATGGTTGATCTCCCATGCACATAAAAGAAGCATTTCACACTGTAGCTAGATGTAATTGGTATTTCACTCAATGTAAATGTATGCCAGCATGCTTTCTGGCTCAGATAAAGCATTGCTTCTCTCTCTCTCCAAAGTAGAGTCCAAGTTCACGTGACCATAGGGCA-------GGCAGGGCTGGAATAGTTGAGAACTGCACATCTGTGTACAAATAAAAAGGGATC-----CATGGCATGCATTTACC---AATCCCTGAAGCTTTTGTTACACTGAACACA-CTACCAGGGAGCTACCCTCGAATGTTCT-CTAGGTATGAGGTTGGACTACTTAAACAAGTACTGTCACTCTGATGTAGAGTCAGAtatttatttatttatttatttatttatttatttatttatttatttattAACAAAAAAATGTACCTTCCTATTCTC---CTGGTGCTGAGAGATGAGAAGAGAAAATAGACCTGGTCTTTTCTGAGGAGGAGGTTTGGGTATGCACCCCCACC-CCAATACTAAGAGCTAATTAATGGTAACTGTTCTGCTTCTAGAGCGCATCCGGTGTTTTTTGGTTTTGGAGCGTTGGACATAGCGTCTCC-TCATGTAAACCA------GTCTACATGCATTGTCTGGCTTACTTACTTATCTCTATCGGACATGCAC-AGGAACCTCCCCTCTCAT--AAGCCTCCTCTGTCTTCATTCAAGCCCACAG-TTCAGTGTACTTTACATCCAACTATCTGAATTTATTTGACTTAGCGTTCAAGTCACATTAGACACACAGCATCTTTTTTTATGTTACATGTTTTTCTTATTTGTCTATTGCCT-AAATAGTCCCCATAAAGACAA--CTCTTTTAGTCAATTTTTCTGAATTTCTAGTACTCAACTAGTGTCAGTAACATAGTGGATAGGCCAAGTTGTTGGGTTGTGCTTATAACTCTTGGAAGGCTAAGGCTGGAGGACTGCCATGAGTTTGAGGTTAGCCTGTGACATAGAGGGAAGTAGAGGGCAGCCTTAGTTACAGTTTCGTGAGATCCTCCTTAGAAAAAAACTAGCTAAAAAAATTAGATCGTGATGGATAGTCAGTGTCTGCTGACTGGATCAATACTCCCCACTTACTAAGCTCTTTCTTGC----TAAATATTGTTTTA----------ACATAACAACATGTTTAATTGCCTTAAGAAGTCCAGGA-ATAGGAACAACGATTATTTCCTTTCCACTACACATAAGGACACCAAAGCAAAAATATTTCAGGGCATCCTGTTGGCA--CATGGTTGATCTAGACTTGGGATCTCAAGGAACAAATGACAGATTCCTTCCTTAACTCT---TGCTTGGCTGATACAAACTATATCTTTAATAATCTTTTCATGGGACATC--ATGGCAGAGttatttattttactttaaaatttttatttttGAGAA----------TCATATATTAAAACATTAAGTTTAATGGAGGTAT
s HiC_scaffold_1 129409037 2088 + 233722169 GTTTGCTGGAGACAAGCTTGGGTTAAACCGGTAGTCCTGGTAGACTTACTAAACAATGCCCTCTTTCATTTTGCTATAGAAATTTGCCCACTGTGTAAATTGTTTTCTGGTAAAAACTTCACATATTTTTGAGT--AGGGAACTTTTTAGATTGGCTTAAGTAACTAAATAGAGCAAAATTTCTCCAACACAACTtttaagtca-aaagaaatagtaaaataattatcATGGCTGAAAATTAGGCTTTTATTCTCAGGGAGAAAGAAGAGGCTATGGAGCAGAGGGgcatataaagtatttttaatatggAAATATGTCTCATTAAAACAGtatatttaatcatttaaattAAATCACACTGTGCTATAATG-CACAGTAACTACTTTGTGCACTggagaaatactattgatttaagatttttaaaaatgtctaagaAGCTCATGACTATTTTTGAAATTCCTTGTCACATATTAGCATAAAACAATAATTATCAAATTATG--ATAGTCTCAGGAACAACTCTTAAGtgctttaaaatcaaaataactcCATCAGTATCAATATATTGGATATGTGGCTGAGTTTTAATTGTACTTAGGAGAACctatttgtttttaacatttgaaaGCAAGTCTAAATTGTGTCCAGTGGGGGCAGTTAGAGTAACAGGCTTTGGCACCTGCCTCAGGTAaggaaagtttttgtttatttcattagtGCTTGATGCTTTGACAGACTATGGCTTTCCACTTACTGCGTGAAGAGCTGCCAGCCATCCCTGCTGGGAGAAGCTAGTATGGGACTAGCAATGAACTTTTGAAAGAAGTGATTATGCCTTATATGGTTGATCTGCCATGCAAATAAAAGAAGCGTTTCATACTGTAGCTAAATGGAACTGGTATTTTATCCAATGTAAATGTATGCCAGCATGCTTTCTGGCTTTTATCAAACACTGC----ATCTTCCTCCAAAGTAGACTCCAAGTTCAACTGTCTATAGGGCagctgctgggctgggctggagtaATGCAGACTCGTGGATCtgtatagaaataaaaaggaatcataGGATTAGCATATATTTGTCAATAATCTATGAAGcacttatttattaaaatatagattCTGGGGATCCAACCTCAAAAATTTTGTTATGTTGGGGGGGGG---AGTTAAATAAATGGTGTCATTCTGATGCAGAGTCCAA-ATTTACT-----------------------------------------ATAAGTAAATG--CTGGTCTATTTTCCATCTAGTACT--GAGATGAAAGGAAGTAATAAACTTGA-CTTTTCTCTGAAAGAAGCTTAGGAATGCCAACATATCACAAATGttaatagc----taatatttattgtgCTATTTCTTGAACACATCAGGCATGTTCTGCCTCAGGGCTTTTGTACTTGCTGTATCCTTTGTACAAATCACGCTTCCTCCAAATGTTGCTTTTAGCTCA-TTCTTTATCTCCATAAGGCCTGCACTAAGATGTTACCTTCCCAGTAAGGCCTTCTGCGTCTGCATTCATGATCACAATTTCAGCATTTCTCATATTC--CTACTCTAATTTCTTTTCTatagcttttaaattattttatata-acatcA----GTTTTATActaggcattttatttatttatatattatctgaaatagatccaaagaaggcagatttttttttaccaatctTTCTAAATCTCCAGCAC----CTAGTGTCTAAAACTTAGTGAGTA-GCCAGTTTATTGAAT---------------------------------------------------------------------------------------------------------------------GAAA--------------------------------------------------------AATAATCACCATTTATTGAGCCCTTTTTTACTTAGTAGATACTGCCCTAAGGACTGTACATACATTAATATGGTTAATTTCCTCAAGGAGGGTAGGAGGTAGGAATTATGATTATGTTCATTTGACTGCAGTTAAGGTAactaatgc-caaatattgcacaAGATCATTCAGGTAGTCATGATTGATTCAGAATCCGAATCTGGGTGATCTGACTACAGATCTCATCCTTTTATCTATGTACTCTGTGGACACAAATTATGTCTTTAATATTCTCTTTGTGGAAAATTCAGAGGCAGAGTT-CTTATGTTTCTTTCTTGTTGTGACATTTGGGAAAAGCTGAAGGCAAAACACTAAAGCA--AAGGTTAATGTAGAAAT

a score=91945
s chr3           143202992 2768 + 160039680 TTCAGAAGCAGAATTCTTTTGTTCCCTTATTTTTGTGACATTTGGGAAAAGCTGAAGACCAAACAGCAAATCAAAGGTCAACTTCACGGTACTGAATAGTGTCTTCCTTTGTTTGTCGGGCTTGGGGTGATGCTTTCCCTCAACAGTATAGTGTTATTTTTAAGGAACCCAAAAT-----AACAACAACAGT------GTTGTGGCTTTGGGGTCG--------GCCAGGCAT--------------GGAGTGGAGAAAAGTGCATTTACATTATTCACTCTCAAAGCAGACTCATCTGGAGGCTCATAGATAACAGTGTGGGTAAGTT---TTAAAGTTTTTAAGACAAGGT------------TGAGCTAACTATACTAGATGAATTAGGGAATATGTGTGGCTGTATGAACTAGGTATACCAAGCTAGTATAATGAGCCAGGTCAGCACAACCTAAAC-TTGTACTACCCCATCTATAATCTTCCAAAAAGTAAATACGATATTTGGTCTGTGGAAATTTAGGTTAATTATGTCTTT-AATTATTACACATATTGTTAGCTTATTAGAGTTTGAGTAGGTCACTGCAGGTGAGCCCAGAGACATAGAAATACTGAAAGTAAATAATGTCGTATATCACTTAATGAAGAGTGGTAATTTCTGAGAAGCAGGTTGTTAATTGATTTCATCCCTGAGTGAATGT-TCCATGTTCACGTTTATAAAATAAGATTTCCATAACATCTCTGAGCCCTTTGATATGAGATGAACTTATCCAAATAGTGGTTGATTGCTGACTAAGTAT----ATGGGCTTATGACTGTACTTACTCAA--TAGGTAGACTGGGAGAAACTCACTGCCTATTGATGATCATATTTCCAAACC--------------------------------------CCTGTGTAAATATCCTAATTTTCTGTACATGTTGAttgatatttaagtatggcccttgacccatagagttttcaatca--gtaaggggggcat---attgatgaacaa--aatttgttatgcattc-acatttattccccttcttaaattaattcagaGGACATGGGGCTATTTTTGTTTCACATTGGCCAACAGACAGTAAATGAT-CTACAC-----TAAACCATCCCGTAGGAAAAGGGAAGGCAGTGTCAGCAGATTTAAAATCTCTGTTCCAGAATCCAGCATTTTAGCCTCAAAAA--TCTAACCAGCAACAAACATTTTAACAACCACCCAACACAGGATGAAG-----CTTATGCAAACCTCTATTTTGGCTGAGCAACATTACATTTGTAAAGATAATATTAATACAAAATTTTAATGCTCAGTGGATCACTATCTGGCAGCCAACCAGCAGCAGAGTATAAAACATTAACAGCTGAAAGTGGGTTCTGAGTCCTTGGAGTTTCTAATTGTTGTTCATTACAAAAAAACCCCACTAAAATCATCTTGAGTGGATTCATGGAGAATTAAGTAGGTTTGGTTTTAATGAAATCTTCAGGTCTTTGAATAAATAATGACTGTATCTTGACTGTTATGAGGGCACATTATCAC------ACTGTAATGAGCTGACATGTAAGGTGACGGAGAAACCTTCAGCAGATCTTGTGCTTGAAGCTGATTAAAAGCTGGTGTCTAAAAGGGATTTGCCAATAGATATGGAACAAGTCATGAGTTTGTGGACCTTAATAATATATTTTCTTCACAAGCAATAACACAGCAATTAGGGGAAGCTCATTGAGGTAGAAATAATGGTAACTGCTGTGCAGATTAGGTTTGCTGAAGGGAGCTCTCAGACATCCACTAAAACAACACATTCCACATTTTTGTTGGTGTGTAATTTCTACTTTATTTACTTATCATCTGAGTTAAAGAGGCCTCTTGGCAGTAATGAGGCTACATAGAATAGTTGAAGAATCTACAAATTATATAAAAGATAAATCTAATGATTACCTATTCTAATGACAGTGCAATCTTGTCTTTCCTCATGGGGAAATGATATGGTTGTAAGGATCTCATAGCTGGAGAGAGTGCCACAGTACAAATGTGGTCATTATTTTTCTGCCTGCTTTGCTCCTGCATGCCTGTTCATGAGAGCTGGGTAATTCATTCAAACAGGAGCCACTTACCAAATGGTTCACAAACCTTTCACTGGGGCTGCACTGCTTGTAAGCAACATGGCAAATATATAAAAATAATATGTTAGAAAACAGGATGGAAAATTTTCCTTTCAGCAATGGAAGAATAGGTCTATAAGGGTGATACAAGAATACAGGGAAGGAGGGTCAGGTTAAACTAGTTTATGGCTACCTCATACCTATTTACAATAATTGCCTTAAAAGTAAATACTCATGGAAGATATGTAATAAAATGTCAGAAGGGACTTTGCTTCTGAGGATGGCTATGTTTACTGAGGGAGAAA------------ACAGA---CTCGGACTGGGTTTGGAGATCTTTAG--TGTTTGAGCAATGACTCCATACT---GAAAAAAGCTTAATATCATTTGTTCTTCATTTCCCCAAATACATCTTTTTCTAGAGCAAATGAAAACAAAAACCCCC--------TTTCTCAGATTTCACCAAATAAATACAGAAAAGATTAGGAAAACTAACTAGTGG--GGAGAACTAAAT-----------------TCTGTCACTTTTGAAGATGGTCAAC--AGAAAACTCAATG----TAACATG--------CAATTAACTTGTGACTAGCCTTAGAATGTACT-TGATAATCCCCATGAAACAAAGTTGTAAGCAAATTCCTG-AAAAAAATTTACCATTTATTATCTAGTAAATATTCAGTGT--ATATGTAGTCTTTGTCATTTTTCCCTTTTAGTATTTTGtttatttttaatttatttttcatactccatattccactctccacc
s HiC_scaffold_1 129411035 2855 + 233722169 TTCAGAGGCAGAGTTCTTATGTTTCTTTCTTGTTGTGACATTTGGGAAAAGCTGAAGGCAAAACACTAAAGCAAAGGTTAATGTAGAAATGTTGCAGGGTTTTCACCCTTGCTTTTCTGGCCTGGGGTGAT-CTTCTTTGCAACAGtctgatgttatttttaaaggaactaaAGTTTTGAAATAAAGTCAGTCTGAAGTTTTTAGCTTTCGGCTTGAGCAGGGTGATAGGCATAGGAATTTGGAGGGGGAGTATGGAGGAGT----CTATATGACTCATTTTCAAATCAGACTGATCTGGAAGTTCCT-GCTGATATGGCAGATCCATTCTTTTGAAGCATGTGAGGCAAGATCAGATCACTGACTTGGATAACTATACTGAATGACTTAGCAAATATGACTAGCTACATCAGCTAGATA----GAGTGAGTACAGTTATCCAAGCTGGTGGAACCTAATTATTTTACTGCTGCATACATATGCTTCTTAAAGTCGAGCA-----TTTAGTCAAAGGCAACTTTGATCACTTATGCTTTTCaacttttgcaaatatt--taaaatttttgaatttgaaCAGGTCATTATAATGATCTTTGGAGTcctagaaaagca------aaatatagtcATGTGCTGCT--ATTATAAGT--------CTGAAAAGTGCACTGTTAGTTGATTTTGTCAATGCATAAACACAGTAAGGTACACTTACACACACTGAGGCCGCTATGTCATCACTAGGTAATAAGATCTTATG-GAACTCCCCTCATATTTAGTCCAGCATTGAGTAAGCATCATTATTTGGCTGTGACTGTACTCACTGGAATTAGGTATCTTGGGAGATATTTACT----ATTAATGATCATCTTTCTAAATCTTTGCCACAAGTGAGCAAAAACATACTCACTTACAAATCCTGGAAGAATATATCTATCTTTCATAT-TATTGATCAATACTTATGTTAACTTCCTGACCCATATTGTTTTAAATCACTGTGAAGGTATAATTTGATTACTGAAGAatcaatttattctgttttttaaatttattcccttTTAAGAATGCATTCAGTGACCACAAGTCTGTTTTTGTT--ACCTTCACTAAAATTCAGTTGATATTATTACCCAGTTTCAGACTATCcaaaggaaagaatgaataaagtTCTTGTAACTGTAAA-TCCTTCACCCAGAATCCAATCTTTGAGcctaaaaaaaatctatctaatatttaaaaatttaataaccaaTTAACACAAGCAGAAAGATGCCTTATGGAAACCTCATCTTCCACTGAACAATATTGCATGTGTAAAGATAatattaatacaaaattttaatgcTCTGTGGATCATTATTTGGTATTGGACCAACCGTATAGCATAAAACAATAACAACTAAAAGCAAATTCTGAGTCCTTGGAGTTTCTAATTGTTGCTCATTATAAAAAG---CCACCAAAATCATCTTGAGCCAATTCACAGAGAATTAAATAGATTTAGTTT-AATAAAATCTTCAGGTCGCTGAATAAATTATGAATGCATCTTGACTGCCAGAAGGATACACTGACATTAGGAAATGGTAATGAACACATATCCAAAG------GGGGGCTTCCTTCAGTCATCCCATTTGAAACCGATTAAAAGCTGATGAAATGAAAGTTTTTGTGGGTAGATGTGCAACAAGTCATGAGTT-GTGGACTTTAATAATATATTTCCTTTACAAGCAATAACACAGCAATTAGGAGATGCTCATTGAGGTAGAAATAATGGTAACTGCTGTGCAGATTAGGTTTGCTGAAGGGAGCTCTCAGACATACACTAAAACAACATATTCCAGATTCTGGTTGATGTGTAATTTCTACTTTATTTACTTATCATCTTAGTTAAAGAGGACTCTTGGCAGTAATGAGGCTACATAAAATAGTTTAAGATGCTGCAAATTATATAAAAGATAAATCTAATGATTACCTATTCTAATGACAGTGCAATCTTGTCTTCCCTTGTGGGGAAATTGTATGGTTGTGAGAAGCTCGTAGCTGGAGAGAGCGCCATGGTAcaaatgtattaattatttttctgcCTGCTTTGCTTCTGCATGGCTGTTCATGAAAGCAGGGTGGTTCATTCAAGCAGGAACCACTTACTGAACGGTTCACAGACCTTTCACTGGTCTTACAGTGCCTGTGAGGAACCtggtaa--atataaaaataatatcct-ggaaacagaatagaaaaat----tttCAGC-ATGGGGCATGACATCCAGA--GGTGTCACCAAAATAAGGGAGAGGAAGGTAGGGAGAAAATAGTGC-TTGTTGCCTTGTTTCTATTTGCTGTAATTACCTCCAAAGTAAACATTCATGAAAGACACATGATCAAA--------------CTATTTCTGAAGACGTCTGTGTTCACTGAGGGAAAAACATTGAGAGAACACAGAAAGCTTGATCATTAGTTTGAGATCTGCAGTTTGTTTG---TATAACTCTACATTTTGGAAGAAA--TGAAGATCATTTG------GTTTTCTtagttgtattttgtttcagagACAATG--AATTAGTTTTCCCTTGAGAAGTTTCTAAGACTTTCtcaaataaatgcagaaaagcttaggaaag-taaataataaataaataaataaataaataaataaataaacctcttctACATACGAAAATAGATAATTGTGGGAACTCTATACCTCCAGGATGGGTGATTTCAGTGAACT----GTATACCTTGAAACATATTGCGTTATTCTCTATGAAAGAAAGATATAGCTAAGCTTCAGTTATGAAGCCTgggatttattatttatta---gtttAGTATTAAAATTTAGTATATGTGGTTGTACActcttaaagtatttttaattttctgattaagTGCCAC-CTCTGTTGCCCACCTTTCTCC

a score=57341
s chr3           143213210 2881 + 160039680 TATAGGGATTATGCTGGAGACTGTCATCTTTCCTCATCAGAGAGAGTCTACTTC---ATCCACAGT-----------CATAGCTGAGTTATCCCAGCAATGACTGCAGCTGATCCTTGTCTACACATCGGAAAATACTTCTTTTGAAAAGTGACAAATTTTCTTATTATGAACATtatatatatatatatatatatatatatatatatatatatatatatacatacacataAAGACAAGAGTCTTTACTCCCCATAAGCCCCTATCTCTAGTCAGCATCAAATACTTAGGGAATGTTAATCTTATGAGTTGACTTGTCAGAACCACATTGTCCAGCATATAGTCAAATTATATATATATAAATTGTTGATAGGTAGCATTTCATGTATCTGGT-TGATATTATCTGATGGATGTGGTTCTGATTTTGAAAA----CTTTCCTTGCTGATCCCTATAACATCAGAAATCTCTTTGTGTTCATGAAATCCCTTCATCATATACAATGGATTCTTG---AGTCCTAGAAGAACACCATATTCAGTTGCTGCA--------AGGCTCCTAACTGCCTCCTAGCCTTTCCTGTAGCTGATCCCTTTCCTTGGG--------CTTCCCGTTGTTCTCAGTTTCAGTCTGTCTGAAGTAAGGAACTTCAGGATTCACCAGAGAACCATCAGCCTTCTTT-GGTTTCTTGCTGACAGCGAGTGATGGAAAGAACTTTACAATGGAGAGGAGTCTGCTGGTGGGGCCGTGAATCATTCCTGCCTAGATCTCCTGTGACTCATTTTCCTTCATTAAACTGAGCAGAGTCAATAGCCCTTCAGTTTTCCA-ACAGTAGATCTAACTGCACTAATGACTGGCTGTTGAACAAGTTTAGCTATGCTCTAATTTATTTATTAAGCAACAGTAAAACGAGTATAAAGTACCCATCAATGGATAATGGGAAGACATTACTGTTTCTG-TCATGAATTGGACCTAAAACACAGCTTCTTTTAGTTGAAAATGGAGAAGGCTGTGCCTGCCCCATCAGCAAAATAAAGAGAAAAATTAGTCTCCTAGTCTCTCATC--------------------------CTCCTAGTTTTAGAC---TATTCTAAATTGGTAGCTGTTTGAGAATTCCCATGTTCTGGGCCTGCTTTTTATGACCTAATGTCCAAAT-GTCCACTCCCCAGTCTCTGTGCACGCTATTTTCCTGTTTTGGTTCTACTGCTCACAGGTAGAGAAAGATCTCAGTTTGACTTTGCCATTCCTTGGGTCTCCCCTTTCTCTCCATCT-CAGTCTTTTACCTATTGTTGTTTCAGACTCTCTTCTCAC--ATCCTACAGTATCTTCCATCTTCAGACTTCAGGGATGGGCTAAACTTCGATCTGATCTATTTATCCTCAGTCACAATTTAAAATCAGTGACCACAATAAGGTAAGCTAATGTTGTACTTTGCAGGAGATTTTGGTTTTGCTTGTTTATTATTAATTTAGTTTTAGTTTGGGGCATTGAATTTGGGCCCTGAAGCATAGAAGACCAGGAGACCAGAGTTCTACCACCAAGCTACAACATAAGGAGAACTTTagaaggggatttggagctagacagctatttggaatctattgctctctta---atgagtgattttaagaaagttatttaacttctatagacctcaagtttgcctttctgaaaaataggTAA--AACGACGAGTTCTAGTAATCTTGTTCACATAAATTATT----GGATCATCTCA-----ATAGATGATGAAAATTGTGTCTCATGATTATATAAAGTCAAGGTAAAATTGTTTTCTGGCAAAAA-----------------------------AATATTTGGTGACTTTGAAATGAGTGGATGGCCACATCCCCACATCCCATAATTTTCTTTTCTACACAAGCCAAAAGTCAATTAAGAGATAAAGTGAACTGGTGGTTATGAACGTTATTGATTTATAGCTACTGGCCAGAGCTGTAAAAGG-CATGTGTGTTATAAGTAATCCACTCCTTTCAGTATGAGGAACCTAGTGTATATCCAGTGTAGGAGCATGGATACTGCTAAATTCACAGCAGTGAGTGGAGAGACTGAGTGGGAGGGATACAATAAG-TTTTAATTTACTTTCCATGTCATTGTTCTTTTAAAAGATGCTAATCAGTAGTAGTATTAATGAGCAATGTCTATT-------------ATTCTGCAGTGCTCTGTTAA--ACTcatgtgctatcttgtttagtttctacaacaacctgctatatctctgttaaacactatttctcatttataagaagctg------agagtcaaagaTAATTTC---------------TACTCTGAGAGTGAAAAGGGTATTAAATTTAAGTGGTCCCATA-AAACTGGAGTATTTTCTCTCCATATTCACAAAGGTTATGACTACCT-------------TGCTTAAAAATGACAGA--CGAGACTAGAAGGCAAAAGCCTTTTAATGAATCTTTTTGTATGATCTTTTAGTGCAAGACTCTGGTGTGTACTTTCAAGGTGACAGTGGAACTTGGGAAATTA-TACCTTGAGGTCTGAGCATTCACACTAAGG-------CCAGATAAAATTGTCACAACAAACACATGGTAAACTGT-CTTCAAATGTTC-TAGGTATGAGCATTAGGGCATCCAAT--GGTGATAAGA--GCCTCTACTCTCAGTCAATTGATTCCTGCATTCATTC-CTAAACAAACCTTTTTCTGACACTCACAGAAACCTTCCTCTGTTGCTGCCTCACAAACTGCTCCCATTCCCAAGTCAGTCTTaaccaggctcagcggtgaacacctgtagtctctgctatttaggagcatgggctgcatggtaatttgagccaggaatttgattcca-acataatagcaaaacaagaccccatcttaaaaacaacaacaA-CAGCAACAAGAAATC--------AAATAACTATTAAACT--------GTTTTACTGTAGCTCAGTTTTGCTTAGCCTCAGCTGCTGGTCCCACCTGGG
s HiC_scaffold_1 129425603 2809 + 233722169 tatatggaTCACTCTGAA--TCTTCATCTATCTTCATAAGAGCCAGCCTCCTGCCACATCCTTAGCGTGCAGTGTCCTATTACTGGACCGACCAGTCAATGCCTACAACTGATTGTTGcatttgtatttgaaaatgtttctttttaaaaatggcagcTTTTCTCAATGT----CTCATTGATACAcat-------------tatacacatataactgtatcaCTA----------------TCATTACTAC--------------------------TCCAAGACTGAGGAGAT--------------------------------ATTGTCCTCCCAATGGGCCAAGAAATCACTTGAGAATT-TTGT--GGTCATTTATTCTATATCTGGGATAATATTGGTCATTGTGTAGCatacatattttgagaaaaagcTTTTCCTCTTGATCATTATAATATCAGAAGGACCATTGTACTCATCAGAGTCTTCC----TGTAAGATGGCCTCTTGTCTCTTCTTAGGACAGTGCCACATATGATTTCCAAATACTAATGAGAAATCTGACTGCCTCCTAACTTTCTATGTAATTGGTCCCTTTCCTTGGAAAGACTGACTTCCTGTTGCCCACAGTTTTAGTCTGTTTGAACTCAGGAAGTTAACCATTCAGGAATGAACCACGAACATTCTTTCAGCTTCTTGCTGACTACAAATGATAGAAAATAGTTTACAGTAGAGAGAAGGCTGCTGGTGTAGCTATGAGTCATTCCTACCCAGATCTCCTGTgactcattttctttcattaaactGAGCAGAGTCAATAGCCCTTCAGTTTTCTGCACAGTAGCTCT-ACTGCACTAATGACTGGCTGTTGAACAAGTTTAGCTatgttctaatttatttattaagcAACAGTAAAACAAGTATAAAGTAGCCATCAATGGATAATGGGAGgacattagtgtttctgttcatGAATTAGACCTAAAACACAGCTT-TTACAGTTGAAAATAGAGAAGGCTA-----GATctattagcaaaataaa---aaaatgtaattatctaggctctctttttcttttctttttatttttttccttactctTATTTTTAGACCTTTTTTCTAAACTAATGGCTAATTGAGAAATCGTATTGCCTGGACCTCCTTTCCTTGGCCCAACGTCCAAGTGGTCTGCATCCTGCCCT--------ACTGTTTTTCTGCCTTGGTTCC---------------------ATGTCAGTCTATCCCTTCC-TTCTGCAGGTA-------TCTCTCCATCTGAAGTCTCTTTGCTCC--CTATCCAACATTCTCCTTCAACTTACCCATTTATATCTTGAAATCTCAAgttatacaaattaaaacaattttgtagTG-TCCCTGTGT------TTACTATTT----------ACCAGAAC-AGGCAACTAAATACAGGACTTAAGAAG-GATGtgcatcttttccttttgttctt--tttatttgcaGTGTTTGGGCTCAAACTCAG--TCTGGTCCAT------------GCTTTGAGCTTTACTTCC-AGCTCTA----GAAGAGA---TCATAAGAGCA--TGGAGGTAGATTG-TGTTTGG--------GCTCTGTTAAAGATGAGTGA--CTGAACAAATTATCAAACTTTTCTAGTCCTCAAGTTTTCTCATTAGCAGGATAGGGAAAGAATAAAGATTTGTAG----attaatgagataatatatgcGTAAGGGCATTTTACCAAGATGAGTAATAAAAACCTTCCATCATAGTTATATGATGTCTagatatatttgttttctgtCAAAAAGTATTTGAGAAATTTCTTAATCACTACACAATTTTCAGTGGCTTTGAAACAaatatccagctacatttcttGA----------TTCTCTCATGCAGATGCCTGAAAGTTATTGGGAGAGAAATTGAGCTGGTTAGTATGAAAGTGATTCATTTGTATTTGCTGATAGATGAAGTGTGGGACCATTTACATTGCACATAGCCTGCCACCTTCAGTGTCTGGAAGCTAGTAGGCACTTAATGTGTGATGATAGTTACTATTATAATCAGAACTGGTAGAGGGGAGATTCTTTTAGGAG----CAATTggcttttaatttcctttcccaACTATCATTTCCTCAAAAGATATTTATCAGTAGTATTAATAAGTGCTGATACTTATTAAATACGTGCTTCATCATACAGTGGTTTATTACTTATACATCTATCATTTTGCTTAGTTCTGAAAACAA-CTGTTGTATTTCTGTTTAACATTACTTCTC-TTCATAAgaagctaaatcttagaaatgaaaataatttcttttccaaACCAAGATATTTTGAGAATGAAAGAGGCACTAAATTGGCATTGCCCTAGGCAAGCTGGGGTGCTTGCTCATCTTACTGAGATGGGTTATGACTACTCCAAAAGCCATCTATCTTGAAAAATGACAGATTTGAGACTAGAAGGC--AGGCCTGCTAATGACTCTATCTGGA-----------------ACTCTG--CTAGAATTTCTAGGTGCTAGTAAGATACAGGTAGTTAGCGCCTTGAGATCTgtgtgaacaatataagaaggaaGCACAGAGTAAGCTGTCACATTAAATAGGTGCTGAGCTGCACTGCTAATGTACGTGGCCACAAGAACAAGGGATTGCAATTGTGTGACAAGATTTCCACTCCTCTGAATTAATtggtccatttatttattcatttaatgaatCTAAATTGAACATTTGCAGGATCATTTATCTATTGCTGCAAAATATACTGTTC------------CAGTTTTGGTCCCTTTC--TAGTGCATATTTGTAATCCAAACTACCTAGGAGGCTGAGT----------------CCAGAAGTTTTATGCTAGGCTGGGCAACATAGCTAGACATTAtgtgaaaaacaaacacaagcaCTTAAACTAAATTGTGTCTTAAAACAACAGTTTTATTTGTTCATGGTTCTATGGATCTTCAGTTTTGACTGGGCTCAACTGGGGGGTTCATCTGAG

a score=43400
s chr3           143218914 1996 + 160039680 CCTAGGGTCTCACACATGAAGAGAAAATGCTATA------------------AACTCAGACTGAAATGCTTCATGGTAGTCCCATCAGCATCATGCTCTCAAGGTGAGGACAGTGTATAAACATATGAG----AGAAAATTATGCTTGGTTGGTACAGTCTACCATAATCTTTATTCATTTAGGTTACATACTGGGTGGCAAGGAGATTATAATTGACAATAGTCATACAGTTTCATGGGAAA-ATAGGCAAGAAGACTATAATTACAATGGATGGTGAAAATCACTTTGGCCAAAGGGCAACCATGGTAATG---GAACACAGGAATAGCTTAACTCAAACAGAGAAAG-ATGACTAGAAA-CTG-----------------TTAATGTTTATCATTCTCATTGCCTTCTCATTGTCAGGGTTCAGATCTGAAGAACATGAGATCGTTTCTTTCCTCCATCTGTCTCTTAGAGGTTTAAGGACAAAATGGCAGAGGTA--------------------GACCATTTCAGAGGggtagtggtgctattggtggtgttgctgctgctgctgctggtggtggtgctggtgctagtgctagtggagatggtagtggtggtaatggtggtggtgctgctgctggtggtgcgggtgctggtgccagtggtggtggtggtggtggtggCAGAAGTCCCTCAATATGGACATTGCATTGGACAGATGGAAGATTTTTTTGCTGTAATCAATTTGAAGGCTCGGAAAACATGAAATACATACTTGACTTAAAGATAAGACCAATTGTGTGTTTTAAACATTCAAGA-TTTTCTTATGGGCACTAGACTTGGAGACAGCCTTTATGTAGGCATTTTGGTGTTTGGCCCACCCATTTTCAATTTGACA---CAGAAAAAA---------ACAAATATCAGGAAATTGGCTTTG-GCTTTAACCA--GATGTCTTAGATTGAAGAAGGAAAAAAAAATAACCCACATGTCTTGCTAGATAATAAAGGAAGTTAGATTTATCATACTTAAGGCAGTAGGAAAT-CCTTCAATCACATATTCACCAGTGCCTTTGGGAACTTGGACAGTAATAAAATGGATGCTGAGAGGATTCAGGGGCAGGGTTCACCTACAGGAGAAAAGACATAACTCCCTCTCACCCTTTCACTCTTTCTTGAGAAACTTGGAAGAGTAAGTCTCCCAGCTGTCCA------GGATACAAGGAGCATCA-TCTTGAAACTCCTTGGGAAAATCATTATGATGTCTGGGTAGCCCTGCTCAGAAGTCCCTGCATTAGAACCGCGTAGCACAGGAG----TTTAGAGTAGAAT-CTGAACTGAGTTCTCTCCCCCTGAGTCAGGTAGATCATTATAAGCCATATCATAACATCGCTGGAAGACTTTGTGGTTTGTGCGACCAGTGCTGGCTAATAGGAACCAGACTGGGGTCAGGGAGAGTTCCGGATGGTTGGGTACAAACTATATGACTTCAGTGGCCCAGATGGCTCTAGTAATCAAATTAAATACCGGCCATCAATCAGTTAGAATATATTTAATA--TGTTATGCA--CAACATTGAGGGGATACATAAGGAATATGTTTCT-TATCTCATCCTAGTCTTCGGTATGATTGTGAAGTACGAGAATGTAAGAAGATTGAAGGTAGAGGTCAATATCTCTTTTCTAGTTCCATGTA-------AAACCAA--ATGTGAGATAAATAGATTCATGTGTGTATACAGCCATTCCCGAAAACCC---TCCCTTAGATCCAGCACATCAAACAAGCTGTTGAAATATGAGCAAAAGATCTCAGATGGTGAAGAGGTGTATTGGTGAGACATGCAACATGCACAGGATAAAATTACTGTCATGGGGTCTTGAAGTTTTGCTTTTTAGTCCT-CCTCATTAACAACAGCCAGTGGTAATAGATGAGCT-----------GGCAAGTACCCTGTGAGCCCTTCTAAGTGTTGTATCTCCATCGTGTAAGAGGA-CTTCTACCATTCTCTCAGAGATTTGCCACTCTTTGTAGG-----GACTTGAGAGCAAGTAGT---GTCAAGGTCATGTGGTC-----------AGGATTTCTGACTTGGATGATCCAGA
s HiC_scaffold_1 129428758 1934 + 233722169 cctAGGGTCTCATACAGGTAGA-ccaatgctctaccactgagctaatgcTCCAGCACAAACTCTCCCTCTTGATGGGAG------CAGCATCAAGGTACCCTTGCAAAGAGAGGGGTCACACACACTGGCTGGAGGAATTTATGGTTAGTTGTTGCAATCTATCACAATGTTCATATATC-AATTTCTGTCCTGGTTGGTAAGGACCTGAATGCTGATAATGAGCACTCATTTGCATAGGAGAGATAGACAGGAAAATAGCAATT-caatggaaggaaaaaagcaTTTTGACAGAAGGGCAAC-ATGCTGTTGTGAGAACACAGGAAGAGAT-AACTCAAACTGAAAAATTACTACTAGAAAACTGATCCTTTGAGCGAGAGATGAATTTTCATCATGCTTATTATGTTTGCAAGGTCAGGGGTCCAACCTGAAGGCCCTGGTATGACTTTTT-----CATCTA---CTTAGAGAATTGAGCATAAGTtggtaaaagaatgaaaagaatgtaATAAGAAGACAAGTGGAAAGGGG-AGGAATCCTTTTAG--ATGTTCTTCATGCACATTTTAATGGACTTACAGA-ACTAAAGTCAATAA-----------GTAGAAATGAAGGTCATTTTTCC--------------------TACCATTA-------------------------TCTTCAAATCTAACCTCTGCTTTGAGGGGCTTGAAAATCCT------------------------------------AATTCAAATATGGCTAGAA----------------TATTCAAAACATACAAGAATCTTTTCATGAAAAACAGGATGAGA-ACAGCCACTATGT-GGCAGTTTGGCATTTTATGTGTGTGTCTTCAATTTAACATTACAGTAGTAAGATATAGTTAGAAGTATTTGGTGAGTGGCTTCAAGCTTGAACCATTGAAGCCTTAGACTGAAAAAGCGAAAAAAA-------------TTTGCTAGAAAATAAAGCCAGT-GGATTTATTATATATATGACAGTAGGGAATTCCTTTAATCACATACTGTCTAGT-CCTTTGGGAAGTTAGATGATAATAAAGTGTATTCTGAGCAGAATCAGTGGTAATGTTCTCCCAAAGGAGAAAAAGTGATATGGAAGCTCATCATTCCAGTGTTTCTAGAAGGACTCATGAGAGAAAATCTCATAGCTGCCCACAACCAGGACATGTGGGGCACTAGTCCAGAAACTCCTTAGGAAAACTGTTATGATGCCTGGCTACTTCTGTTCTGAAGTCAGTTTATT-TAACTATGTAAAGTAGCAGAGACTTTAGATCAGAATGCTAAATTGGATTCTCTCCTCCGGAGT-GGGCAGATCATTATAAACC-TACCTTCATATCTCTGGGTGACTTTGTGGTTTGTC--ACTAGTCCTAGCTAATGGGGACCAGACTGAGGTCAGAGAGAGTTCCAGATGGTTGGGTGCAAGCTTTACCACTT-AGTGGCCCAGATGGCTTTCATAACCAAATTAAATACTGGCTATCAATCAATGAGCATATATTTAACACCTATTATGTGACTGACATTGTGAAGGTACAT---GACcatttttttctatctcattCAATTC-------TAATTATGTGATATAAGAATATAAGAAGA------------------------CATCTATTTCTATGAAAATGTGTAAGCCAAACATGTGGGGAAAATGCA-ACATGTGTTTCTAAAACTATCCcctaaaatacttttcttttgtgtatgAGGCATCAGAAAAGCTGTTAAAAT-----------CTCTCCAATGCTGTGGAGATACAGTGGTGAGACATGCAACACAAGCAGAATGAAATTACAGCCATGAGGTCTTGGAGTCTCATTTGTTAGCCTTGCTTCATTAATAAGAGCCAATGACAAGAGACAACCTATGTTTTGAGCGCTATGTA--CTGTGAACTCTTCCAAGTATTTCATATTCATTATCTAATTTAATCTGTTAAAACTGTCTTAGATAGTTGCTA---TCAGTACGCCTCAGATCTGGGAACAAGTTGCCTGCTCAAGGTCACATTGTCAGGAAGAATCAAGGACCCCAGACTTGGACAATTAAGA

a score=163840
s chr3           143222592 4389 + 160039680 [encoded data, 4646 characters]
s HiC_scaffold_1 129432111 4240 + 233722169 [encoded data, 4646 characters]

a score=43625
s chr3           143227510 1005 + 160039680 TTCCTTTTCTTTGCCATTCAATTTAGTCATAGCCTAAAGATATATCTTCCAGTCTACATGGTCTTTTGATATACTTTAAAGGGTTTGCTCATCTAAAGTAGTTCTGTGAGCAATCTACTATTTTAACTTCCACTAACAGA-AAACTGAGGTACAGGAAGACTATATGGTATGCCTGAGCCTAG---------TCCTTCTAGATAATACCTGTGCAATTCAGTAGACCAAGATGCTTATAAACGTTGGCTTATAACCCAAAGCGTTGAAGTCCAA-AAGACTTACTGaattcacttagca-tcttcaagtcttagttccctcaattttaacatgaacaaataacactt-----acaggattattttgcatgcagaaaaaaacaacttaaaaaaaaagacatgtaaagtccttggcataagagttggtatg------------at-gcttaatatggcacatagctccact-attGAGATACTCTCTCCATTTAACATCACTTCATTTAAACAGTGCTGCTTAATTTACTAGACTTGATTGATCCATTGATAGCATCTTTTCATTGTTAAGAGTATTAATTAGAATAGAAGAGGAAGATAGAATGAAACTTAATTTCCCCT-AGAATCCTAAGGGATTTGTGGGGGTCAATTTATTAATGAAATGTGAAGAACATTTGGCAAACCCACCATATGAGACAAAGCATTGTAAAGGGGCCTTTAGAAAGAACCGGTATCTAATGTtaatgtctgtgaaatggaactgtcataggataatggccttttgatggcacagaaaatgccaaggcatagataagacatttattttgaaagcactagacaatcacctttggatggtatccttctacttggtatttatttctaatagactgataattgatatgggtataattatttttcttgatggatttgatgtattagGCAATGGGCTTATTCACTCTGTATTATCGCTCAGTTGTGGATCCATCCCTGGACCCTAGGATGAACCTTCTATCCTGTATTTTCTCCCATCAGAATTTT
s HiC_scaffold_1 129437176  981 + 233722169 TTTCATTTCTTGGCCACTACATTTAGCCATAGCGTCAAGATTTAACTTCTAGTCTTCCCAAT---------TACTTAGGAGGCTACAGTCTTCTAACAAAGCATTGAGATcaatcta---ttttcatttttactattagggaaactgaggcatgaggtGCCTATACGATTTGATTAAAATCAGCTTTTGAGATGTTTCTAGACTATATc------acttaaaagacaaaaaag-----aagagt--aTCTACAAGCTCAAACTTTGAGATTAAAGAAGACCAAACTTCTAAACTCAGCACTATGCAAAC---AG--CCTTTGACTATCACCTGA-CAAATAACACTTGTCTTATAGGATT--TTTATATGTACAAAAA-------------------TGTATAACACTCTTAGCACAACAGTTGATATATAACCACGAACTATAGCTAAATAGATCATACAGCCATATTTATTAATATAGTCTTTCCACTTAATGCTATTTCATTTAAGCCATG-TGCTTAATTTATTAGACTTGATTGATCTATTGATAGCATCTTTTCATTCTTAATAGTATTAATtagaatagaagaagaaaa-agaatgaaacttAATTTCCCCTCAGAGTCCTAAGGGATTTGTGCGGGTCAATTTATTAATGAAATGTAAAGAACATTTGGCAAACCCACCATATGAGACAAAGCGTCGTAAA-GAGTCTTTAGAAAGAATTGGTATCTAATGTTAATATCTGTGGAATGGAACTGTCATGGGATAATAGCCTTTTGATAGTACAGAAAATGCCAAGACAGAGAtaagacatttatttcaaaagcaCTAGACATTCACCTTTGGATGGTGTCCTTCCACCAGGTCTTTATTTCTAATAGACC-ATAATTGATATggatgtaattatttttcttgatggATTTGATATATTAGGCAATGGCTTCACTCACGCTGTACTATCATTGAGTTGCCATATATTCACTGGTCATAAAGACCAATCTTTTACCCTGTATTCTCTCCAATCAGAATTCT

a score=58946
s chr3           143235628 1290 + 160039680 TGAGCACCA----CTTCTTTCCTTAATTTAATGAAGGGAAAGGCCTCACTTCCATCCAGCTATTATGTTAGTGAAAATAAGGTCATGAATCAGACCTGCTTCCACCAAAGAACCAAAGATCCATTGGCTGTTGTTCAGGCTTTCCAAAGG-CCCAAAGGAAGAAATGCAAGGCTTGTCTGC-------ATCATCCAATTTATAGCCATGGAATCTATTGGTTTTCACATTTCCATATTTTCGAGGCACATTAGCAACTACAAGAAAAAAATATTAAACGTGAAAACGGTTGGGTATGTGTCAATAGAAAGGCTGCCTAGCCA--TCTGTCTGCTGCATGCAT-TACAGAGTGCTGACCTACACAATTCCCTAAACTCAGATACTTGCTTGCAAAGTTATCTAGTGCTTAAAATATAATAAGAGTTGGATGCTTTTTTTCTCCTTTGTTTTTGCTGTGAAAAACTGTGTTTCCTTTAGAGGAGCTTACAATTTATATACTGAAAATATATAAAAGAATTATGTGTCAACAAAATGGTGTTTAAGGTTTTAAATCATCCGAACAGTCAGCCCTGAGACTTCCTCGCTAGACATCATGGAGACTTTATGAAAGTTTTATTCTACAATTCCCTGCTTGCCTTTGCTCTTAGCTGCTTCTTCCAGCTATTCATATAGTTTGAAAAATAGAGTTTATATGCTTTAAGTTGCAAGGCATTTAGAATTTTCATAATCTCTTTATTGTGGCTGAAGCAGTC-AAAAAATGAAGTCTGTTGTTGATAATACTTCAC--TGCCTTTACTAGATTAACTGGGACAATGAAGTTAGAATTTGTGGAATTTTTTAATACTCCA-TTTTAGGGAGCCTTTATTATGAGCAAGGTGTAAGGTAATTAAATTACCTTCAAAATACTTGTTGAAAATGAGGAAGCAGAGTATTAATGAAGCTTTATAGAGAATTGATGCTGGAGACAGGTTTCTGAGAATAAGAATTTTAC---TTCTTTTTCTGA--TTTTCATCACATGTAGTGGTGTGTTAATCTTGATGGATGATGACTGGTTTTTATTCAATCAATTTGAAAAAGGTAAATagcagtccctttgccagagtgtcactttccaatgtc--tatgttacccacagacaatggcagtctgagaaatattagatgcaaaact--------------catctaaattctaaattttgcaccattaacaagtagcaatgaca------------tcttctg--ttgtctgtccaacaggcagtgtgagtcaactttctattcagtgtatccacaatttataagctaccctcctg--ttagtcactttgctccttg
s HiC_scaffold_1 129443687 1278 + 233722169 tgagcactagtttttttttttcctaatttaaaaattga----gCCCCACCTC-ATCTAACC----------------------TATGAACCAGACAGGCTTCCTTCAAAGGAGCAAATCCTGACTGGCTGTTGTGCAAAATCTTTTGGGGTCCCAAAGG--GCAAGGGAAACCCCGTCTGCTGCAGTAACTATCCAATTTGTACTCATGGAATTTACTGTTTTTCACATTTCCATATTTTTGAGGCACATTAACAACCACAA-AGAagaatattaaatgagaaaatggttAGATAAGTGTCAATAGCAAGTCTACTTAGGAAACGCTTCCTGTCATACCAATCTACAGAGTGCTGATTTACCTGATTCA-TAAACTTGGTTACTCGATTGCGAAGTTATCTAGTGCTTAAAATGTAATAAGAGTTAGaggctttttt----ctttgtttttgttgtgaaaAACTGTGTATCCTTTAGAGAAGCTCACAATTTatatactgaaaatatataaaagaattatgTGTCAACAAAATGGTGTTTAAGGTTTTAAATCATCCGAACAGTCAGCCCTGAGACTTCCTCACTAGACGTCTCAGAGACTTTATGAAAGTTTTATTCTACAATTCCCTGCTTGCATTTACTTTTAGCTGCTTCTTCTAGCTATTCATAGAGtttgaaaaat--agtttatatGCTTTAAGTCGCAAGGCATTTAGAATTTTCATAATCTCTTTATTGTGGCTGAAGCAGTCAAAAAAATGAAGTTTACTGCTGATAATATTTCACTGTGCCTTTACTAGATTAACTGGGACAA-GGAGCTAGAACTTatgacattttttaatactcCATTTTTAGGGAGCCTTTATTGTAAGAAAGGTGCTGGGTAATTAAATTAGTTTCAAAATGCTTGGTGAAGATCAGGAAGCAGGGTGATAATGAAGC-TTATA-AAAATAGATGTTGAGAGTTAAGTTGTGAGAACATGGctcttacattttctgttttctatcttttcatggcGTGTAGCAATGTGCTATGTAAGTAGTATGATTATTGATCCTTAGTCAACTAATTT-ATATAAGTATATAGTAACC--------------TCAATTCACAATTGCATTTTGCTAC-------TAATTGCATTCTGA-AAACATTAAatgcaaaatttcagaaataaataactCTTAAATTCTAAATTGGGTAATA-TAATGAATAGT-GTGACAAAAATCTCACACTGTTCCAATTTGCCTTTCCCCTGGGAA--ATGAGTCAACCTTTTGTCAAGTGTGGCTAAGTGGTATAAGCTACCcatttgtcttaattacttt-ctcattg

a score=113339
s chr3           143240079 4057 + 160039680 [encoded data, 4252 characters]
s HiC_scaffold_1 129450339 3879 + 233722169 [encoded data, 4252 characters]

a score=19253
s chr3           143245964 637 + 160039680 GGAGACTGCTCATAAGAGCA---TTGGAATGAGAGACTTTTAACGACCAGAATTCATCAGGAAAAGTTTATTCCTGAATG--------------GAATCATATGTTTACCACTGTAACATGAACATCTATCATGATCAGAGTCCAAGAAGGTTGGTTTGAGCAGTTTCTCTCAGGAGTGGTGCATTCCCCACAAACATTAGTGACAACCATGTGGCCTCCTTAGGCTGAGAGCTCTGGGCCATGCTGTTGTGTTTTACCCAGTTGCAAAGAGTGCCCTA----------------TGCTCCTGAAATGGATTGTATAGATTTCTTTGCAATGGTACT--TCCAGTTAGTGTCCTAGAACATGGGTGGATATAAACACAGTTTCTAATCGACATACCCAGAAGGCTGGAAAGCTAACTGACTCATCTTTGCAGGGA-TGACAGCTTCTGGAAAAAAAAAAAAACTCTTCTACAAGTGCATGTCACTGGCAGTTTGACACCTGTGACTCACTGTGCTCTACAAGCATGAATTTGGAAATTCCTTTAGGAGGCATTTCCATGTCACAAAG-TTCTAGAATAGCTGTGTTCATCATGTGTCATCTCA--------------------------------CTTGTCATTTCCTTGTGGGGGACAGTCAGTCCAGGTCTATGGTGGATTCCGTGAAGAAAACTGGCATGCCA
s HiC_scaffold_1 129455302 682 + 233722169 GAAGATAGATCAGGAGAGCAAAATTAAAATGAGA--CTTTTGATGACCAGAATATACCTGGAAAAGTTTAGTGCAGAATGATTGGAACCTTCCAGAACCCTATACTTGCTTCTTGGATCTCTGCATCCACTATGACCAGAACTCAGGGAGGTTGCCTTGAGCAGCTTA---CAGTAAGAGTCCACTCCCATTCTGCA--AGTGACAA--ATTTGTCCTTTTTGGACTGATAGCACAAGGAAACGCTGTTGT-TTTTATCTAGCTG-GGAGAGTACCCTAACCATGAACCTGCCAGGGCTCCTTGAGTGAATCCTATAAGTAGTTTTACAGAGATATTGGTCCA-TCGGTGCCCTCCGACAATGGCATAACCAGCCAGAATTTTCAGTT-ACATCTTGCGAATGCTGGCAAGTTAAGT---TCATTTTTGCAGGGACTGACAGTGTCTG--------AAGAAGCACTTCTCCAAGTACTTGTCACTTGTAGTTTGACATTTCTGACTTACTTTGCTCCATAAGCATGAATTCAGAAAATCCTTTAGGAAGGATTTACATGTCACAAAATTTTTAGAATACATCTGATTTTCATTTGTCATCTTAGAATcagatttaaagtttttttttttttatttttttttatttttttatgggaGACATTCAGCCCAGGTCAGCAGTAGTTTCTATAAAGTGAATTGGCTTGCCA

a score=41876
s chr3           143246600 1947 + 160039680 ACATAGAAAGTAGTACCATAGAAAGTGGCTTTGCCACACCTGTATAGGGACTTGCTAATTTTATCAGAGTCACAACCC-AGTAAAC-ACATATGAAACACT-----AAGAATCTGTCAGG--AGCAAGAGCTCTGGTTGCCTGTATTCCCAA-----GTGGCACTCAGCCCACCCAGATACTTTTAGTAAACTCCACAGTGAAATGCTT-----------------ATGGTCAGCTTGCTATA--AATTGAAGT--TTTAATTCAATTTGACATCTACTAGAAGCAGAAGTTTGATTCAATTGTGCA--------------------GATATGATTACAAAGGTCTGTTTTCCTTAAATCCAGTGTTGCC-TCACCTTC-TGATCTCTGTGTAGACAAGTTCACCAGGTTAGGACGAGAACACAGTGAGG-TGTCCATCCTACCATCCTAAAAG--------CCCCTGCTTGATGGCACCATCATGAGAGGACAACTG-ACAGCTGGTTGGTTGGTCAGGGCAAAAT-------------------GGTGCTTGCCCTTTTCAGAGAACTGACAGCAGCATTTCCCACTGTAAACAGCAGCATATATTCTTTAGTTCCTAACTGTACAAGATGGGCTTTACAATTGAATTACAGGCAGAACATTTTAACTCGGCATCACACAAGATGGTCTTGTAAGTCAGTGAAAAAAGATTAATTTGTAAACTTTTGCCTTTTTTTCTCGAAGTATTATCTCTATGAAGCAGTTGTGTTTTAAACAAGGCTGGTCACGTTATGATTTGAGAGATGTAGAGTGTTCTCCATGTAGACCTAAAAGGTTAAAAAGATGAAATGTTTCCTTCTTTATTTCTGAGACAGGTAGGAAGACAGA-------GACAGCACTATTTT--TTTCCAAACTGGATGCAGTAAACACCCTTGATAACAAGGA-TGTCTGCATTCTGGAGATCAAGAGTGTAGTTTATTAAATGAT-ATTTCTACATCTTTCTTGTCTTTTCCCCTCTACAGTAATtttatttatttatttatttatctgtttgtttgtttgtttgtttaatttatttatttatGTCAGTGAGCCATTGTTTCCACCCTTACTGGGTATTTACAGTTTCTTTCAAGTGAAATCAAATGGGATCACAAATCCTGTTTCATGAGGATTGGCTTCACCATTGAAAATTATTAGCGCCAAGCTGAGAAAAATGGGTAACCACAGGGAAG-TTCTCCCCTTGGAAGG-AAAGCTGGATGTCCCTCAAAAGGGAAAGAAGATGCAGCTCTGCTGAGGGACTCCCATATTTACAAATGCTAATGGAAGCCATTGAATTTCACTGAAAGAGGGGCTGGAGAGTGCAAATCACAAAGTAAGAGGGG-CTTGGGGAGAGAGTCTCATTTAGACATAGAGATCTTATTTACAGTAACTTTATCCTAATACCT-CATTTTCAGCATTCCTTGTTTAAATGTCATAAGCCCAAGGCATCCTGTCTTTCTTGCGTACCTATCTATATATCTATATTGCTCTGTCTTCTATAACCATTTCCTGGAAACAACTtctttctcctcctcctcctcctcctcctcctgctcctgctcctcctcctcctcctcctcctccttctcctccttcttcttcctccttctccttttttcctcttctttttcttctttcttatacctcttcttccccctccctctcctcctcttcttcTCCTTGTCTTCTTTTCTTCTGTA---------------------TTGTTCTCAAAT-ATCAACTCAAGAAAATTGATGTC------------CTTTTTTTTTTTC---TGAACCAAATAGTATGTAACAAGGAAGGAAGCAACGAGGCTAGGCAGAGGACAGGACACTTGCCTCTATTGAAGGATTCCAGAGACAAGGC-------AAGTCTGGGAGCAG-GTCATTATGTAATTACCCATGATTAGCCATGATTACAGTGGCTATACATCACTATACATGGATTCCTAAGGATAACAGGTGATTTATTCGTCATAGGCAA-TGGGTCTCAATTTTCTAAAGATTTGGAGGGAAGTCTTAGA
s HiC_scaffold_1 129456590 1724 + 233722169 acttagatGTTAGTAACATAGCATGTGCCTCTGACACATCTGATTAGGGACTTACTAATTTTATAATAGTAGTAATTTGAGTGAATTATATGTAAAACACCCTTAAAAATATCCATTAGTGTAGAAAGAACCCTAAT-ATCTCTGTTCCTACTCTCTATGGTA-TCAG---ACTCAGTTACTGCTAGTGAATTTCATAATGAATTGCTTCATTGTCCAAAGTTCTTAAGGTCTACTTTCTATATAAATTAGAGTGTTTTAATTCAATTTGATGTGTACTGGGAACAGAAGTTTGATTcagtttcacattgtcttttgttttgttcagaaTGTGATTACAAAGGACTGATTTCCTCATTTTTAGCTTTCCCATCACCTTCCTGATCACTGTATA----------CCAGCTGAGTACTAGAAATCAATGAGGGCCCCCAGCCCATAGTCCTAAAAGGTGCTCCTACCCTGATAGATGGCA--GTCATGAGGGGGCAACCGGACATCTGTGTGG---GTCATGGCACACCTTTTCTGGGAGACAGCTCCAGTGCTGGTCCTCCTCAGC-AGCTGAGTGCACCACCTCCGTTTGTAAATAAGGACATATATTCTTCAGGCCATAGCTGCACAAAATTGGGTTTACAGTTGATTTACAGGCAGAAT-TTTAAATTGAACATCACAAAAGATAGTTTTCTAAGttagtgaaaaaa-attaatttgtaaactCTTGA--TTCTTTCTTATAATACTATTTCCATCAATACATGGC--TTTAAAAGAGGCTGGTAACTTTATAATTTAAGA---------------------------------TGAAAAAGATAGAATATTTGCCTCTTTATTGccaaagcagccagagaaagaagATGACTGGTCAACAGTAGTCTACTTCTTATAATGAATGTATTAAATACCCCTGATAATGAGGAATGTTAG--TTCCAGAGACAAAGAGTTCATTT----AAATGATTATTACTTTgtctcacttttttttcctt---------------------------------------------------------------------------tgagcc-tGGTTTCCGTCCTTACCAAGTATTTACAATTTCTTTCAAGTGAGATCAAATGGGATTGCACTTCCTGTTTCACGAGGCTTGGCTCTACCATTGAAAATTACCGGTGCCAAACAGAAAGAATGGGGTAACTAAAGGGAGGTTTCTCTCTTTAGAAGGAAAAGCTGTGTTTTAGTTGAAAGGGGAAGACAATGCAGCTGTTTTGAGTAGCTTACATCTTTAGAAATGCTAATGGCTGTGATTGAATTTCACTGAAAGTGGGGCTGAACAGTgtgagtcaaaaagaaaaaggagttttGAGGAACTAGTCTCATTTGGAGACAAAGCTCGTATTTACAGTAACTTTATCCTAAGATCTCCAGTTGTAATGctcctaatttaaaaatttagagcc----------------------------------ATAGCAAAAATGTTC-----------------ACCTAAGA--------------------------------------------------------------------------------------------------TTTTGGCACTTAGTTTTC----------------------------------------------------TCTAATTGTCTTTTGtagggggttgggggtggggaaCTGTGATCTCAAATAATAAGTTCAATAAATTGGGTATCAGATGTTGCTAGCCTATCCTTGTTCAATTGAATCGGGC-GTGTGCAATTAACA-------GACAAGGC-AGGCAAAAG--GGGAGGCTTGTGTCTACTGAAG--TTCTGGTGATAATGTTAAACTGAAGTTTGAGAACAGTGGAGCTGTGTAATTAC----------CTAGGATTATACTTGTTATTCTTCATTATACATGGATATTTAAGGATAACAATTGATCT----GTCATAGGCAACCAGCTCTCGATGTTTTAGGGATTTGGAGGGAAATCTTAGA

a score=18324
s chr3           143249339 866 + 160039680 taaGCTCACAAA----TCAAAAATTTTTGGACAATAGTATTTTTAAAAAAAATAAGTACAACTTTGGGTTAATCTGCTCTAAATACTAAATCTGTGATTGTCTCCT-AAATGTACAAACATTTTGACCTTTGGTAGCTCTAGGAAGTAAAGTATGGTTGTATTAAAAGACAAGAATGTAAAAATCAGCCTTTACAAGAA-TTCTTTTGGCAG----AGATATCTAAATGGGAATATCTGCCTATGCTACACTG----TCAGTCTGAAGCAATGCAAAGTGAAATCTACACGC--CAATGTTGGAGAATTCAGGCTCTTGCCCATGCATGGCTGTTTAAAGTGGCCTAATCATTCTTTCATT-------------------------------------------------CTGAGCAAGCACAAGGGAGAACACTATAAAATA--------AGCCCTAGCAGACTGAAGGAATGCTTCCTGAATGC-TTTCATGATCCTTC-AAACAGTG-TTTCACTCCCTCTTGAAACCCCCACAGCCCATTAGACTCTTTGCTAAGATTAGGCCTGGTGAGTTTTCTCAAAGCCTGGGATGGTAGAATTGAGAGCATGTGCTTTGT---------TCAAGCCTTGTACACTTGTGGTGTGAGCCTGTAGACAACTTA-CGGAGATGATATGGGATTGTACATCTC----------TGATGAGATGGAGGGAGTGACTGAG-AGCCATGGAATAATCAAGCACTCCAGGACCAAATTGGAGAGGTGTTAATGGAATATGTCTGAGTATAAGTCCAGCAGGGATGCTTGAGCAGGCAAAGACACGTAAGGGTTTATGAGAGTGGAT-AGCCAACTATGTATGTAGCGTGGAAAGTGCAGGAAGTGGAGAATATATGAGGGTCTTGTCTAACAGAGCAACAGAG--CCTCTGCCAAGAGAAGAAAGCATTGGTCAG
s HiC_scaffold_1 129460543 917 + 233722169 TAAGTACATAAAATGCTCCACATATTTTGGACAAATGCATTTCTTAAAAG--TAAGTATAGCTTCGCTTTA-TCTGTTTTGAATGTTAGTGCTGTAATTGTCTCTTTGAATATACAAGCCTTTTGACCTTTGGATGCACTGTGGGGCTAAGTTTGGTTATATTAAAAGATGAGAATGTCAAAGATGGCCTTTAGAAGAATTTCTTATGGGagataaagatatttaaatagaaatatttatctaTATTATGCTGAAAATTAATGTGAATcaatttaaacttaaatttgCATGCAGTGATGTTTCAGA----------------GTGTGTGGTTTTTT-CATTGGctcaatcattcattcatttacttgttCACATATTTGTGATCACTCATTCAGTTTGTTAGCTTATTCACTGAGCAAGCACTAGAGAGTCTGCTGCAAAACACATTTGATAGTCTGAATGGGA-GAAGAAATGTATCC-AAATGCTTTTTACTGTCTTTCAAAATAGTGTTTTCactccattttaaaaactgtacagtCCATTGGAGTTAATGCTGTGATCAGCTCTGTTACTTTTCCTCAAAGATGCCGATGGTAACACTGAGAACATGTGCTTTTTGGAGGGACATTCAGCCT--CATCCTAGATGAACGAGCCTGCAGATcagttagagaaaaaaatgtagaatttcaaaTGTTCCTCATGACATGAAGACATGGTGGAAGGGACTGGGAAGCAGTGGGAAAATAAAGCTCATGGGAaacaga-ggctgaggcattgACTCCTTGTATCTGTGCATAACTCCAGCAGGGA----AAGGCGGGTGAACATCTGCTAGCTGCTGGGAAATTCGCTGAGCAACCCACG----------GGGCAGAGCGAGGGGTGAGAACCTCA------TCTTACCTAACAGGGTGGCAGGGCACCCATGC----AAAAGAAAGCATTGGTTGG

a score=134642
s chr3           143250225 5329 + 160039680 [encoded data, 5589 characters]
s HiC_scaffold_1 129461899 4815 + 233722169 [encoded data, 5589 characters]

a score=47794
s chr3           143257073 3142 + 160039680 AATACTCTGACAAGGACCGT-TGGACCAAATCAACTTG------CTATTCTGATGACAGTTGATCCTCAATGGAATATCTGGAGGAAGCATTCTACCACAACAAACTTCTTA----GCAACTCCCTGCTTTCATCTTCAGGCTATCTAACCCTGGTGGATCTT--AATCTACCTTCTGTTTAATTGGTTATACAGACATTCCGAACTATGAGACATTCCTAACTATGTTGCATTATACATGTTTATCTAAATCAGTGTGTTTGTCTAGTAGCCC--ACTTATC--TACAGGAAACGCTACAAGACCTTAAATA-------------------GGTATTACTTCT---ATCATGCTTCTTTCTGCACATACTCtc-tcaactgaat-cctaacca------------------tattctgacagtaactttcactatctgaggtacagtaacaaaactattatggattttgtttcttgtcttcattatttcacagccagaacatt---tgttaatgtagatgctagcacccttgggaagggagttgttctcttttctaagttgagagctctgaccttctcacttaaatgt-gtgctttcgggtttcttgtcgacacagatgaattgccagcacggttacttttgtacttcggggccaatattaaataa-----gggctgcctggaca-ctagcactgt----aatggtatgacagttaatctgatt-----gccagccaccacgtgagtaatgggcaggtagagtcttctgtgagaattgcacagacaaagggatggctcatttcggacggagtgaggaa--ggatggtaaaaggttccatcatgtggtcaagaataactgacaattgaaagcttgtagggggcttaatttgggaaattcccatttaatacttttggacaaaaggtgatctgagtaacaagccacagaaagagaaaattgcaacaaacaaggcactactgTACTTAAATAAAATTTTCTATGTGAAGAATACCTTGAGCAATTTTTAGAATAAGCAGTAGTCTTTGAAGTCCTATCAAAGCCTTGTATACATATCTAGATGCCACATATACTGTCAATGTAAACAAATCATATTTCAGCTATGTTTACTACATGCAGAAATACTTTTTAAAAAGTAAGAAGTTGAACCCTTCTGGTAAATACCAAGGAGATGTGACATGACTACTGGCAAAGGTGTCTTCCTATCGTCTACCTACAAGAT-TAGAGACTCACCCATTC-AGTTGCACATAAAA-CAGAAGCTCATTA---CATCTTCTCACTCCAACTCATATGAAGGGACAGAGGACCATGATCTGCTTGGGAAATAGGAAATGATTTTT-CTCCACAGTTTGCACAAATAGGTTGTTTGAAAAACATGTAAAGACACGC---TCTTAAGACATCAGTGCATAGGGTCACAGTGATAGGTGCCAACCCATTTCTAACTTTTGATTAATTTCTTCATTATATCCACCCAACACATCACTAAATT----CACTATTACTACACACATGacttatattgtggcttataatttagaaagtaccttcacagtatggtttaatttaattccaacaacagctctctcagttaggtgttttatctactaacagtgactgagactgttgagtgaagtactaggccaaaggatgcactactactaagtggtgaagatgtgagtctaagccagattttTAAAAAGT--GTTTATTATTACTGTGTTGCGTATGAtgtgtatgatgtgtagcaggtgtgccaagccccccaggtggaggtcagaaaacaacttggtgaagctgactttct-ccatccaggtttacatggattaaggtctttaggctgcattggagggtagtaagtacacttaccactgagcca-tctggctagccTAAGCCAGACTTTTGATACTCAACTTTATTGCTCTGTCTGTTACAACAGACTGACAGCAAAATTCATATTGTTAAGTGACTAAAGGTTGGGTGCACAAATGAACATGGCCTATCTGTACAAGTCTTTCTTTTAGAGAACACAGAATCCTTTTGAGTATTAACTT-ACAGTTTCTTTAAGTCCACCATTATGGAAACAATTGGATTTTCTGCCAAGAACCATTAAAGCTGATTTGACAAGAATGACGAGGCTCTTTGAGAGTTGATTGACTGTCAGCACAAGGCTTTTAGAGCTTGCTAAAATTGCATCAACTATAAGCGAAAGAAATGGATGGATCTACAAAGAGATTCAAAAGAAAGTTCGTGACATAAAAAGCAAATGGTAGATTGGTCAAGTATATATACATTCATCCAACAGCTCTCTGATTCCTAT----CAAAGTTCATTTGTTTCATCTACAACTTTCTATGGTCTTCACTCTCAGAAACTCCCTGAGGACTAAATTGATCAATGATGACAGGGAAGAACATCAGTTTGTGTTTATTGAGAAGCTTTCAGAAGAAATATTTAGCTGAGACTTTTGTTGAGATATACCTTTGGTTTTCATTTCCTGGTTAGAGCATCTAAATTGTT----CTGTGTTTGCAACCCTGTCAA------TATATCAACAGGGAGTGTCAATGGATAACAAGATCTTTGAA--GGACACAGGATTGTTGTTGGATTCAGAAGGTGAGGTCTGGACTTCTTCCATGAAAC--CACCTTTTGAAGATCTATAG-----------------aaattattataattttaaagaaaaaaaaGACAGCAAAGTTTTTACTTCTTTTGTTTTCAACCAA--------TGTATTTCATATTGTATCAGCACAACATATTTGACTGCTCTATACTT-AAAGGGAAACAAACCAATGAGCAAATATAATTATCTATTTATGGTTTTCTCTAATTGTATTTTATATTCTAATTGAATTTAATATTCTAGGTATTAACAGAA---TTAAAAGTAGATATTGTCAGTATGGATTTCTCCTAAT-TTTGTATTTAATCAGCtattattattattgtttattattattttatCATAGTATTTGTTCTATCCCTTTTAGGAATAAAATCCCACCACTAACATCCCATCATCTAACC---------CTTGAGT-ACACACTTGGCTATTGGCAAGTCCAGCACTAAGATAA--------------GTT-----AATGACTAAATAAAATAAGAATTCCTTGCACAGACCCTGACTTACAGATAAACCCAGACTGATTTCTAGATCATGTTCCTTCCGTGATACTGTCAGTCACCTTTGGTGTTATG-AGTCAGATTCTTAAAATGCTTTTGCTGAGATAATAGAAAAAGA
s HiC_scaffold_1 129469271 2723 + 233722169 AGCACCCAAATAAGGGTTATCTGCACCAAAGTAGATTGATGTCTTTACTATTATGCTAG--GATTTTCAGGGAAGCATCTTATGGTAGTTGTTCACCATTTCTAATTTATTAACAAGCAACTTTTTGACTCTATCTTTAGGAAATATAATCTTGGTAGAATCTgcaatataatatatatgcaattGGTTGTTTAAATAATCCAAACTTTGAG-CATAGcttaat---------------------tctaaatatatgt-tttgtATAGTAGTCCCTGCTCATCAATGTGAGATATATACCAAGACTCTGAATGTATGCCTACAACTATGGATAGTACTACATCTTATATAGTGTTTATTTCTGCATATGCACACATAAATTAAATGCCTTTCCAAAGTCAGTGAGTATCATGCATTGGGATAGTAACTTTTACTct-tgaggtacaaaaacaag----cTATGAGT---GTTT----TCTTCATAATTG-ATGGATAGAGTATTGCTTTTGACTGTAGTTTCTAGCAGTTTCAATATacaaatttctcttttcattaatttgagatcttttatcttttcacttaAAGGAAGCATTTGATGGCATCTCTTTGGAATA-CTGAATCACCAGCATCACTACTCTTGTACTTCAGAACCAATACTAAGTAAAATATGGGATACTTAGATAACTAGCTCTGTCTGCAAATCTATGACAGTTGATCCTATAAGTGAGATAGCTACTGTATGACTAACTGGAGGGTAATATATTCAGTGTGGATACACTGGGCAAAGAGTTAATTCATGCCTCAAGAATGGAAGAAATGGATGACA-----TTTTATTATACCACTCAGAATAGTCTGGGATTTAaaacttata-----------------------tttttaattct-----------------------------------------------------------------------------gaaattttcttc--------------------tttctcgaACAGG-----------------------------------------------------------------------------------GTTATgtcttct-----------------------------------------------------------------------------------gtctcttctttttgtACACCAATAGTTTACAAAGTCTCATCCCTTCTACTTCTTCATAAAAGTAAAAGCTCATGAGATAATCATCTTG-TATATTTTACAATAGGGAAAAATGTACAGTAAAGATTTTGGGTAGAAGGAACTGGTTTTTTCTCTGTAGTTTATGTGAACAGGTTGTTTGTAAACCACACAAAAATGTGCAATCCTTAGGATGTTAACACACAAGGTCATAA-----------AACATATGTT---CTGTCACTTAATTTGTGCATTGTATCCATCCAATATATTATGAAAGGTGGACATTATTCTTTAGCTTGC-ATTTTTATGGTGATTTACAATTTATaaagcacttttaaaatattgttctgTGTGATACCAACAATAACTTTTC--ATTAAATGAATT------TGAGCATAACTGAGATTGTGAAGTGAAGAAATAAATCCCCACATCCACCATTATGAAATGGTGCAGCTATGACTCTAAGTCAGATTTTTGACCTGTAAGTCTATTGTT------CTGCCTATGACAT------------------------------------------CAGAG-------TGGCATAGCAAAATTTATGTCATCAAAATTCTAATGGGTGAACA--------CTAAATTGG------GTTAGAACACGTGTAGGTGTACCAGTCTTTCtc------------ctttctattct----tttcttgttttatttatt-----------------------------------------------------------------------------------tttttttagaaaatggagAATCCTTTTCAGCATTAACTTTGGGGTTTCTTTAAGTCTACCATCATGGAAACAATTGGATTTTCTGCCAAGAAACATTAAAGCTGATTTGACAAGAATGACGAGGCACTTCAAGAATTGAATGACTGTTAGCACAAAGATTTTAGAGCTTGCTAAAATTATATcagctaaatgcaaaagaaatgaa-gtatCTACTCAGAGGTTCAAAGGAAATCCTGtgacataaaaaataaa-ggtagAGTGGCCAAG--TATGTAAGTTCATCCTTCAGCTTTGTGATTACTATAATATAGAGTTGGTTTATGT-ATTAACATCTCTGTA-GGTCCTCATACTGAAGAACTCATTGAATCCTAAAttgatta--gaaagaaagaaagaaaa-aagtatgtgtTTATTGAAAGACTTTCAGAAGACCTATTTAGCTAAGACTCTTACTGAGTTATATGTTTGA-----AATTCTAGGTTGGTTCTTCTGAAGTGAGATAACTGCTCTTGTCACCATATCAAACAATGTGTGGCAAGTCAGAG-GCCAGTGGAGAAGAAGATGTTTGAATTTGATGGATGACTGTTGAAATCATCATGAGGAGTGGTAGAAACTTCTACTATGAAACTGTACTTCTTAAGGATCTATGGTGAcaagaattatttcaaaattgttGCAACTTTAAAAAGCTAAGATAAGGCAGACtttttccacaattttttttcaaaaaactttGAACTGCAGTTTAGGTTAGTCTAGC-TAACAGATTTTTCACTTTTACAGTTGAAAAAGCAACgaacaaataagcaaacataaTCTTTTACATATAG-CTTCTTTAATCTCA--------------------TAAAACTCTGGCttttaaaacagcttttaaaaat--atactcttAATATGGATTTTCCTTaatctttgcatttaa-------------------------------ttaatGCAGGATCATCTCTGCCCCTTTTAGGAATGGAATCTCAGCATGAATATGTTATCATCTAATCTTCCTATTACTGGAATAACACACTTGGCTATTGACAAGCTCAGTGTTAGAAAAATAACCAACCTCCAGGTTAGAGGAATAACTAAATAAATGATCAACTATTAAAGTAGTCTCAGATTTGTGGATAAGCACACATTGATTTCTAAATTGTGCCTCTTAGGTGATACT----ATCATATTTGGTGATATGAAAACAGATTTGAAAACTGCATTTACTGAGATAACAGACAATGA

a score=95248
s chr3           143262466 5819 + 160039680 [encoded data, 6594 characters]
s HiC_scaffold_1 129471934 6016 + 233722169 [encoded data, 6594 characters]

a score=308914
s chr3           143270443 9011 + 160039680 [encoded data, 9533 characters]
s HiC_scaffold_1 129478562 8943 + 233722169 [encoded data, 9533 characters]

a score=86966
s chr3           143282639 3198 + 160039680 TTTGCTTAAGGATCTGAACAACAGCATGGAGCAGTACCTTCCAGAGGAAGATAGGTGTGGCTTTAGCGGGGAGATAGGAATGCAGAGGAAAAGAACAAGAT-GCCCACATAAAGCTATGTTGTCATGTGTGGAAGGATCTCCAGAACAGAGGGTGAGCCTGAAGTTAGACCCAGAAA--CAAATTACAACTAGAAAGTGAGAAAAGAGACGCGATGGGCCCCACAACACAAGGCCTATTGGCAGTAATGGTTGCCTACTATGCTATTTAAAGGAAAGGGGAGAGATTCGGGGGGAGGGTGTTGAGGGGGATTGGGCTTCTAATGTCCATGCCTGTGATGAAGCACC--GCGTTTGAGGGTCTCATTTTCTCCTCCATAAGCACAGCCTAGAGCCCCCAGCATGGCTCCCCAAAGAAATTTAATTTATTCTCTTCTCCTTTGTTACATCCTCTTGGAAATTTTGTCAGGAGAAAAATTAGGACGATATATTTTCTAAAGCTAACCGCCTAAGTCCTATCAAC-TGC-ATTTGGTACAAAGAAAAA-GATGATATGAATATTTGATACGGGGCCAAAAAGAGGTCTTATGGATTAAATATTATGGAAGGTTTAAAGTCTTCTGGAAAAAAAAAACCAACAATCTAATTTTGAAGGCTTTATTAAATTGTGGTAAGAGTCTTCCTTCTTCCTATTCTGTTG----TCCTGAGCTGCAATTTGGAGGAGCT-------GAGCAATTATACAGATAATAATCATGGGCTCAAGCTTTTTAATGGTAAAAACATGACTTGATTCTCTGAAGAAGTGAACAGGCAACGTTTTCTCATTGCTGTTAATTATAATTTAAGACAGACTCAATTTTGTATTAGTCACAGATGTTTCATTTCTCAGTTCATATGTAATGTGGGACATGGAACATCTCCAAAGAGACTT-AAAACTGTTTGCCGTCTTGTCCATCTCCTTACCACTTGGTGTGGTCTTTTCCAAAAAATCATGACATTTGGAAAGAAGCTAAGAGAAGTTTTGTAGACATTTTCAAGACATTTTGCTTTCCTAGGTCTCTAAAAATATTCCTATTGGAAGTGAAAATTGGGACCATGCTCTGAGAAACAAAATCAAAATATATATTGTGTCTTTAGAAAGCCTGGTTCAGGGAGGGGCAGGCTGTGTTCCAACTTTGAGG---GAAGGGACCCAAATGCATGATTTCTGGGTTGACACTGGCCACAGAAACCCTTAAGAATCTCCAGTGTTCTTAC-AATATTAAGCAAAAGTGTATTTCAAATTGTTAGAACCAGCAACTAGCTCCTAAATGACTCCACTGTGGATTGTTCTAATCAGCGAGAAGTT-ATCAGTAGGACAAATCACTCGTGAAATTGTGATAGATTTGGGTGTAATCCAAGGCATGGCGTGTAAGCAATGCATCCCCGCGATGAGGCTGGGAGACTTGGATTGTGTCTGAAGATTGTTAAGTATGGCAACTTAT---TCTGTTGTACTAA-CACAGGGAAAATGAGGTATACAGTAACACCTAGGTTTTTCTGATTTCACAGAGTGATGCTGTTTGGAAAA-AGGTGAATTACCATTAATATGTTATACATGTTTTTTTCCCTTTTACATTTTCTTGATAAAAATCAAAGTTGTATGTTATACGTTAATATTTCCACTA------GAAAATGTTCTATTGAAAGAGTATCCAAAATATAATCAAATGGTTGAA---TTTTTAATACAAACT--TACTGTGTATTTAAAACATAC---------TCATAGGAC--ACTGACATGATACGAAGGTTACTACAGTAAAACAGACTAACAG-TCCATCATTGCCCATAGCTCCCCATTCTCTCTGTCTTTGTTGCAGGAACAGCTAGAACCTGCTTCTTTGCTATGAATTATACAGGCATTTTATTATATtatacagcaaatttaattacctggagtcctcaacttgtgcagcagacctctaga-----atgttccttctgtatactgtccatttcatggcctctaacttacccccccaaaacacacacacactttctccccaccatgcttctctattaaccacaattttgggttct-------------------aattttgtggttttgg------catttcacat----atgccatcatgcatgc-----attctgtatcttatctcttttacttaacacattgtcttctaggctcagcc------tgttgGTAGTAATAATAACATATTCACATTTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacagaacaacttacaggaatcagttcactccttcctctatgtgattctgaggaaacagactcaggtccgtagccttggcaattgtgcctttgc-ctgctgagccatcgctctggcTTTCATGTCttttctttgttttttgttttttgtttttttttgtattttgtttttcctttttAATGAATAATgttttgtttgctttttccctgatgattgggaattttgaaaacattttcatataccttgctcatatttgtctttttaagagaaatatacatttagatccctcacctcttttaaagtttgtgggtttttgttttcaattattgact----tccgtgtattatttattacacacttttccgagga-tagattgcaaacacat-ttccccagttcagcagctgctctttcacttttacttctttttccattgctatgctccaggttttattattattaattattattattattattattattattactcagtgtagtcccgttcattca--ttttatcttttgtggtctgagcttctgatgcgctatcc--aaattaatttcaaagtcgatgtaccaaagtctt--cctttgtcctcatataggagtttcacaattccttttttttattagatattt---tctttatatacattttaaatttcaaatgctatcctgaaagttccctatacccttcgccctccctgctgccctacccacccactcctgcttcttggccctggcattcccctatactgagtttcacaatttttcaccttacatgtccatgttccacctctcgtgagtttacattcatatctggt-ataagatataggtctgagttcattcctctgcatgggaaaattcagtttttcctccacgagccattgaacagggcttctttttcccactgtgtcctctttgc-actttgtcaaaagttagttgattgtata--tttgaatttatttccagagtattttgggg----gctccatggctctaggcaactgttttc-atgcca
s HiC_scaffold_1 129489596 2927 + 233722169 TTTGCATGTGAAGGTAACCAATTACACAAGGCA--AGTTGCCAGATGAATACTGGTGAGACCACAGGGCTGTGAGAGGAATTCTGATGATT-GCGCAAGATTGTTGAGGTATTGCAAAATTGTTGATTGTAGGAGAACCTTCAAAATAGAAGATGAGATTG--GCACAACCTGGAAGACTACACCGCAACTAGACAGTTAGAAAAGAACAGCGACGGATCCCAGGGTTCAAGG--TGTTGGTGG-GACAGACATAGACAAGGATGCTTAAAAGAAAGGACAGAGACT---GGACAGGCCTTTGA-----------CATCAGGAGCCTGTGTCTGAGATAAACCCATTGGGGCGTGAGGGACTCATTTCCTCTTCCATGAACACAGACTAGAGGTTTCAGCATGGGTTCCCAaggaaatttaatttattcttctcTTCTTTGTTACATTCTCTTGGGAATTTTGTCAGGAGAAAAATTAGttcaatatattttctaaaaccaAAAGCTTAATTTCTATCAACATACTATTTGATATGAAGAAAAAAGATGGTGTGAGTATTTGATACGGGGCCAAAAAT--GTCTTACGGACTAAATGCTATGTGGACCCCACAGTCTTCTGAAAA---------------CTAATTTTTGAGGCCTTACTAAATTGTGGTGAGAGTCTTTATTGTTCTTACTCTGTTGCTAGTCTTCAGCTGCAATTTGGGAAAGCGTAGGGCAGAACAATTATACAAATAATAATCATTGGCTCAAgctttttaatgataaaaatatgacTTGATTCTCTGAAGAAGTGAACAGgcaacattttctcattgctgttaATTATAATTTAAGACAGACTCAATTTTGTATTAGTCACAGATGTTTCATTTCTCAGTTCATATATAATGTGGTACATGGAATATCTCCAAAGAGATTTtagaagtgtttgcagtcttgTCCATCTCTTTACCACTTGGTGTGGTCTTTTCCAAAAAATCGTGACATTTGGAAAGAAACTTAGAGAAGTTTTGTAGACATTTTCAAGACATTTTGCTTTCAATGATCTCTAAAAATATTCCTATTGAAAGTGAAAATTGGGAACAtgctctgaaaaacaaaatcaaaatgtacATTGTGTCTTCAGAAAGCCTGGTTTGGGGAGTGGCTGGCTGTGTTCCAGTTATGGGGAGAGAAGGGGCGCAAAGGCACGATTTCTGAATTGATGCTACTCATAGAAACCTTTAAGAAGCTCCAGTGCTTCTGCTTCTATTAAA-------------CAAATAACTGGATGGAGCAGCCTCTTCCTAAATTACTCCACAGTAGATTGTTCTAATGAGGAAGAACTTAATCAATAGGACAAAGGACTTGTGAATTCATGATAGGTTTGAGAATGTTCCAGGAGATGGCAGGTTTGGAATGCAAACCCTTGATGAGTCTGGAAAGCTTGGATTGTGTCTGAAGACTACTAAGAATAAAAGCTTATCTCTATGTTATATCAGCCACGAGAAAAATTTCAAACACAATACGATGTATA-TTTTCTGCTATGGTGAAATGATACTATTTGGAAAATAAGAGAATCCCTATCTGCACATTGTAGGAATTTT------TCTTGGGTTACGTTGGT-AAAGTTGAAGTTGCATGCTGCATGGCAACCTTTCCTTTGCCCTGCAAAAATGATATGTTGAGAGAGTAACTAAAACATAACGAAGTagttcaaattttttaaataaaaatttgtattatgCAATTAAAATATACAGCATGATGTTACTGGACATACAGAGAGAATGAAAAGATTACTACAGTGTAGCAAATTAACAGATCCATCATCACACACAGCTAC---TTTTCT---TCTTTATGAAAAGAATAGTTCAAATCT--------------CATTTCACGTGAGTCTATTCACATCACGC------TTTTATCCCCTACCGTCCTCAGATTGTGCACTCCCTCCCTCGGTAGCCTGGTTCATTCTCCACACTTGCCGTTCTCTGCCCTCTGATCTATGTCGC-----------CCCACTTCCTTCCCATCTGAC--CCCTATTAACCACTGTTttggtttctctctttctttgtatatttgaattttcctttttcagatttCACATTTCACATGTAAATGAgagtatacatatttttatttctgtctttggctACTTTCACTTTACATAATGTCCACCAAACTCATTCAAAGTGTGGTAAATGGAAAgagatcattcttatttttagaggttaaataatattctctgtcttttt--------------------------------tttttttttttttttgttaccagggattgaactcatgaccttgcacttgccacgcaggcatttatgccactgaactaaatccccggc----------------------------aaTATTCTCTTGAGTAT------------------------ATACAATGCCTGTAATTTTCCTGATGACTAATGACTAATAAA-------TATGCTTgttggccttttttatttttcctggagAAATATCCATTCAAatctcctatttttttaaaa--ttaggttatttactttcccattattaaataaaatttggatAT--TTAAATACA------TGAGATGATTAATTTGCAAGTATTTGCTTCTTAATCCATAGActgctgtttca-ttttattgttttct---ttgctgta---cagaaTTTCT--TTATTAGT---------------------------TCAGTGTGGTCCCACttacttaatttttctcttttgtagtcTGAGCTTTTGATGTGTTAttcaaaaattcatttcaaaaccaGTATCTGAGAGTTTTTGTCTCTTTCAAAGCTTAGGAGTTTTATAGTTTCTAGTGTT------ATGTTTaggtttttaaattcattttgaa-----------------------------------------------------------------cTGATTTTTG--------------------------------------------------------------------------------TGTATGGTGATAAGGAAGAGTCC--AATTCCATGTTTTACATGTGGAAATTCAAATTTACCTGTAACATTTGTTAAA-GGAATGTCCTTTCTCCACTATGTCCTTTTGGAGACCTTGTCAAATATTAACTGATCATATACgtttgaatttatttcta----atttttgaattTCGTTCCTCTGATCTATGTGGCTGTTTTTAATGCCA

a score=110669
s chr3           143291213 3899 + 160039680 [encoded data, 4131 characters]
s HiC_scaffold_1 129504236 3974 + 233722169 [encoded data, 4131 characters]

a score=47835
s chr3           143296299 2471 + 160039680 ATATCTCAGAGTTTGAAAAGAAGATATACATAGGTAGAATTTGGAGACAGAAGTAGTTGTAAGCATAAAAACAAATTTAGGGAGTTAATTGAATGTCATTATTTCCAATCCAGAAGCTGATTTCCTACTGGGACCAGAAACAA-------ATATATTATGAACAAGTTACTAGGCACATAAAACATA-----CAGGACCTCTCTTGAATTCTACAGAATC---ATTACATCTAGGGTTTTCTTCGGGTCAGCTAGGACACTAGATCTGAAAGGATCATGCTTTAATATTATCTTTAAATGCTATACTCTGCAATAATTATGGATAAGTGAATGCATTTTTTTTCTCAC----ATGAACCCAGAATTGACCCTATCCTTCAAAGGCTATTAGTGGCATAGAATGCCCAGTGTTTGTAGTTAACAACATAACAGTATTATATTCTGTACTTACACTTACAAAGCAATTTTATAATGTCTCCTATTTACTTGATGGTATCCTGCAATGCCCAGGGAACAGTAACTTAGACAGAATAGGCCAACCACAATAACGAGCGAGGCATGTCTTATTATTGCCGTAATGGTAGACTTCTGATATTCAATTACTCAACAGTTGCCTGGTGCTTGGGCTTAAGAATGCTTTTCTGAGCAATTGATTTCTACTTTCCTCGTGCCCTCTTTACATAGTACAATCAGCGATCATTTGGCAAATGCTAAATTTCATTACAATAAAACTGTGTT--GCCACTTCCTTGACTTCTCATCAACCAGTAACAAATTTATGTGGAAAAAAAGTACAGCATAGTACATTGATTCTCAAATACATCT-CAAAATGGTATCATTTGTAAGCTTTTAGGGTCTTCTAACTATGTTTTATCCTCTGAAATTCTGATTTAGT--GTGAAAACATTAAAGTTATTCAGATAATTATAAT---AAAAGACATATTAAAACTTACAATTATATGAT-------------TTTTAGAGACATCTAAACCTGAGGTTATATTTATGCTTTCTTATTAATAACTGAATAACCTCAAAAAAGTGCTTAAGTTTGTTTTAAGATTTAAttactttcattttaagtgtatgactcttttgtctgcttgtccgtgcacttcatgtttgccttgggcctgtggaggtcgaaagaggacatcaaatctaaaactggagttatgggcagctctagccagcatgtgggcaccgggaactggacatgggtccccagaaagagcagccagtgccttaaacactgagctctctctccagctccAGGTTCCTTAATGTTTATTATCTTCATCTTTAATGTCGGGATAAATGTTATTGTAAGATTTAAGTGATTTCATAGACAT---AATTGTGTTTAGAGATGTTGCTGTCTAGGAAGCATTTAGTAAATGTTTTAATGCTACATGCATTATTAAATTCAAA---GTAGCAAGGTTACGGAAAATTGACAGGAACTGAATTTCAGAAAGGGGGTTAAACATAAGAGAAACAGTCGAGAAGCAACGGCACATTTAAATACATGGGGGCAAGCAAAGGGCTCATGCATTCTGGAACTGGAG------TGAGATGGTCATGTGGGAGAGATGGGGGTAACTGGGGA-----AAGGCTGGAGTC-CTTCTTGAGGCA----------------AGGCTCTG--TTTCAGGACTGGGTTTTTACTTTTGAATAAAGTGTGGTTCTTAACAC--AGTATTTGGATTCATACAAAAGCACGTGT----ATTTACAGTTTGTGGTGAGTCCTGTTGTGGTTAAAGGGAAAACAACAATTAGTTGTATTTACCTCTGTTATACCATGTTCCCTGCTCACCAGTACTAGGATACCTTCTGCCAGCTCAGAGTGAAGTTGGTTGGATGTGACAGGTACACTGGTGATT------------------------------GTCATACTCATTGATGGAACATTATTTATTCTGGGGATCCAGAGGTATTTTTATGTTCTAAGATGACG-GATCCAAGAACTGTACCACTTTCATTGATGAACTTCTGCTACACCATGATGGAGTAATTGGTTCGAG--AGCAGCCCTCTTCTCATGAATAGTGTATAAACAACTAGAAAAGTAGCTCCATGT--AAAACAACTAATCTCAGATATTAG-----AAGC----AGGAAGTACACTATGCGCCGTAAAAATTAATGAGGAAGACAATCCTGATTTTTTTTTAATTTCTCCTTAGAAGCACTTTCTATGTATGCCCCAGAAAagggaaaggaaatcaagacaagcctaatggtcttgctgaactaaagagacagatgttagactttagggaagctgaggctgtcagaatttataaga----ttagtattaagaatgaagcactacacagagaaaggattttaagagaA--GGCCTGGGGTTGCATTGAA---AATATAGAAGAATACCTTCCATGTGCCT---TTAAGACTTGACAAAGTTTGGCAAAGAAC-ATTCACAGAAAGAGAGTTAGTGAAGATCTGTACATCAAAATA-------------TTATAGTGAGTCAAATGAAGCTAACCAAGCTAACATAGGA-TCCCAAGGAGCACCGAGGATATTTGA
s HiC_scaffold_1 129509359 2250 + 233722169 ATAGGTCAGAATTCGAACTGGTCATATAGACAGG----GTTTAGAAATA----------TTAATATACAAACAAATTTAGGAAGTTAATCAAACTTCTTTACTTTTAGTCCTGAAAGTGATTCCCTAATGCAACCTAAAACAATTCTAGGATTTATTCTATGCGAGTCTCTAAGGACACAGTACTTATGTGCCAGAG----TGTTGAATTCTATTGAATCCCTGTCATAGTTA---TTTTCATGGAGAGAGCCAGAACACCAGATTTGAAAGAATCATGTTTTTATCTGATACCCAAATTCTCTGTTTCTTAATAATCCTGGATAGGTGAAGTAAATTTTTCTGACATGAGAATCAACCTGCAATGCATCCTATTCCTCAAAGGTTATTA-----ATAGCATGTTCAGTGCTTGAACTTAACAATATAACAGTATTATATTCTGTGCTTATACTTACAAAGCAATTTTGTAATGTCTCCTATTTACTTTATGGTATCCTGCAATACCTAGGGAACAGTAACTTAGACAGAATCAGCCAACCACAATAATAAGTGAGGCAAGT-TGATTATTGCTCTAATGGTAGACT--TGATACTCAATTACTCAACAGTTGCCTGGTGCATGGATTTCAGACTGC---TCTGAGCAGTGGTTTTCTACTTTCCTAATGCTGTTTCCACATGGTATAGTCAGTAATCATTTGGTAAATGCTAAATTCTAGTACAATAAAACTGCTTTTGGATACTTCTTTGATTTCTTATCAGCTAGTAATAAATTTATAGGAAGTAAAAATATAGTGTGGTACACTGATTCTCAAGTGTGTCTGCAAACTGACATTACCTGGGAGGTTTTAAGAGAT----GCTATAGCAGACCCTCAGAAATTCTGATTTaatcagtaaaaatat--------ttttgaaaatgataaCTTGTAAAAATGAGTTATAAATAATGAGTACAGTGTTTCAAAGCACAGGTTTTGGAGTCA-CACAATCTGAATTTGCATTCTCGCCTCCTTCTTACCAGCTGTGTAACATTGGGCAAGGTTTTACATT--TCCTAAG---------CTTTCATT----------------------------------CACTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTAATA-------ACATGTTATTgtatgttttaattgttttta-atacaTGTAAATAGTTTTTAGAGTACTTGgcacacagaaaacatgcaataaacATTTTGTCACTA--------GCTTAACTCAAGCTTGGGGTGTGGTCTTGAAATTTGAACAAGAATTGACCTGAGGACAAAGTGTTAAAC---------ACTTCAGAGAGGCAGTGGCAGAGTTAAAGATTTGGAGATGAACAAAGGCATGATGTGTTCTGGAAATAAGGACATACTGAAGCTGGAACATAGTAGGGATCAAGCAGACTGAAGAGACAGAACTTTGGAGACACTGCTTGATGTAATCCATGAAGAGTGATAGATTCTGCATCTTAGGGCTGGGTTCTCAATATCCAATGA----TGTTTCTTAACACTTAGTATTTG-----ATAAACTAGTAACTGTATGGATTTGTACCTGATGGTAAGTTATGTCATGGGTAAAGTAAAAGGTA----GACTTGCCTTTGGCCATTCTGGGACATTACCCTTCCTCTCTAGTATTCTGATACCTTTCCCCGAGTGTAAGAGCATAGGGAAAGATGCAGTAGGTATCCTCACAATCATTCATCACCCATCGCTGAATTTACCACAAGTCACATGTACTGATGGAAAGTTACTAATTTGGgaaattcagtattatttttatgtc---aggcGATATGATTTTAGTGCTACACTTGTT----------ACTTTTAC----CCATGA---AATAGCTGCTTTAAGTCAATGGTTCTCCTGCCAAAAACAGAGAGGAAGCTACTGAAATAGGGGATACGTGTTGCAAACAACT-ATTTTAGAAATTATGCAACAAGCCATTAAGAGCTATACAATGTAGCAAATAAACAAGGGAGAGAGA-----CTAAGTCATCTTCTTTTTTTCAGAAGAGGCATTTT-----TAGACCCcagtgaa-agaaaggaaatcaaaCAGAACCCAGTAGTCTTGCTGAATT-----------------------GGGGAACTGAGTCTGCTGGTCTTTTTAAGGATGTGTAATAATGAAGAAGAAGCAAT-----GGGAAAG----CTGGGAAAATCTTCTTGAGTTTCTGTTGAGTTTTAGGCTGAAGAATATCTTGAATGTATGTAGAGAAAAACTTGGCAAGACTTGGCAAACAACTACTGAGAGAAGAACAACTACTAAAATACTGTA-ATCCAAACAAGTAACAGGACTTCTGTGAGGAACCAAATGGCACTGAGCCAACCAGGGTAGAATTCTCATGGAAAACTCAGGGTATTTGA

a score=13743
s chr3           143302677 719 + 160039680 TCATTTAGGTTTCCTTTGAAATACCAGCCCCATAGACA--CATTTCTTAACAAGGCATCTGGCCAG----------CACATTATTGCATTCTATT----ACGGAACACAACTAAGGttatttgttcatttacttattgcctgccaatttaactgtcactagaatgt---cgactttataagagtaccttggctattccactccctaaggaattctaatgcctaaaaaaaaggtctagtacaagtaATTTCAAGTGTCTACATGGAGAAATTCTGGAAGTATTAAATATTTGAGT-TTTTGAAATGACAAAAGTTATTGGTGACAAATTATAAAAATACATTTTTGTAAAATTTATAGTTTTGTGTTTGAATTATGTGTGCTGCCATGTTTTAGG--GATTTATAGGCCTAACTCTAAGAGTAACTATAAGTAATAATAAAGAGAATACTTATCAATA----CATTCTAAGCTTAATGTGTTGTCTCATTCACTCATTCATTCCTT----------------------GGAAACCTCTGGGCATGCTAAGGTGAAAGCTTGCATAGT-CAACAAATACAAAATA--CAATACAAGAAAGTATAGGGCA--CACAGAAACGAGAGAAACAATTTGTATAGGAGTTGAGGGATTGAAAGTTATTAGAAAATGATTTGACATTTTAACTTGGTCCTAAATCATAAGAGAAATGTATCTAGTAGAGAGAAGAAAGA-AGGCAGAGGGGACAACTTAGGCAAAGAGCTATAGCAATCAt
s HiC_scaffold_1 129517397 737 + 233722169 TCGTTTAGgctttatttcagaaataaactcTGTGAAAAGCTCTTTCTTGACATA--ATCCTGCCTGAATGCTCTATCACGTTACCCTGTCCTATTTGGCATTCATCATAGTGTAGGTAATTTGTTTGCTCATTTATTGCCTGTCA------CAGCCCCTGTAATGTAAGTGGCATTATGATAGGACCTTGGCTGTCTTATTCCTCAGTGAAACTCAGGGCCTAGGACAG-TGCCtgctacaaatattttttaatatttaagtctaA------TGGCAGCAT-----GTTTGAATGTTTTGGAATGATAAAGATTATAAGAGAAAAGTCATCAAA---------CATAAAATGCACGTGTATATATCGCAAATGTATATGTTGTGGTGTTTTAGACAGATCTGTAGGGCTCCTTGTAAGGGTAACTCAAAGCAATTGTTGAGCAATTACACATTATCATTCCCATTCTCTGtgtcactcattcattcattcattcattcattcattcattcattcattcatcacttTCTGTGAACTCCAGGCATGTTAAGATGAAGACATATATGATGCAATAAGTGCAAAACAAACAGCACAAGAAAAGACTGTGAAAGTACAGAAATGGAAGATGTAATTTGTAGAAGCATTATGGAAGGAGAAAACTCTAAAGAGGAATCTTTCATTTTGGCTTGGTCCTAACTGTTAGTACAAGTGTATCAAGTAGAGAGAAGAGGAATAAACTGTGCAGACA------GGGAAGAGCT-TAACAATGAT

a score=37198
s chr3           143304627 1447 + 160039680 TAAGGAAGCCATTGGTGTTGAGGTATAATGAGAGTTGGGTTGTGGATTGATGGAAGAGAGATTCTAGAAAAATATCTTGAG-ATCCATAATGAATGACATTGAATTTCGTGACTAGAATTTTATC--TAGCAGATAACAGATCTTTATCAAAAGGCTTTATCTAAAAAAAGTGGCCAGGTTTGTGTTTTAAAAG-AATTCTTGCAAGAGT-TAAGAGAATAGGGTTATCAGGTATAGAGAGATGAGCTGAAAGATCATTAACTATTTTCAGGTAAGAGGTGACAAAAGTCTATGTTAAGTCACAAGCAATGTGAACAGAGAGCTGATAACTGACTTCAGGATCAGAAGAGGTGG-TCTTAAGAACCTCAAGAGACTGAGGAGAAAACAGGGCAATGGAGGGGACATTGGGTTTCTGGTTGGATGT-GTGCACATGAAGCAGTAATTGATTGCCTATGACGTATAATTGATTG-TCTCCTAGCTTCACCTCACTCACATCATTGACCTTTCTCCCCAACCTTAACTCCAGG-CAGAGGTTTCCTTCTACTTTCGCCTCATTAATAGTTCTTTTCATTCAGCAGGTAGAGAGCCTGCTAGCTAAGCAAACTGTCTGAGCAACCTTTCCCTTTTTCTGTGTGTCAGCGACTGGGGAGCTCACGGATTGGTTCAATACCCTCTCAATTGCATCAGAACCTTCACCAGGTACTTAGAGAGCTACTTTACAGTCTGTGCA--CTTGCTTAGCCTCTAACTACATGCT----TACTGTAATTCACTCAAC-TTTTACTTACTATACTCTTG-GTCCACTTATACTAGCCCACAGTCGCTATC-CGTTCATTCTCCATGTCC-------CCTTTTTCTACATCCTTGTGTAAAACATAGATTTCCATCTGTGGGTTCACTATTGGGATGAACGCTGTTGGAGATAAATGGTAAACGTGCAATATACGTTTATTTCTCGGAGCTTGGGTCTGAGGTTAATTAATAAGTGGGACTTTTCACCCTGTCTTC--CTTTGTCTTTCTACTTTTGTTTCC--------CCTTTCCAACCCCAGTGCTAAAAGGCTGATTAAG-ATGTTTCCCTAATACATACAAATAGACTATGGGGATAGCCA-TCTTCCTGAAAAGACCATTTGCAGAGTCACATGTAGGTTAAATGGAGCCTTGAGCCCTGTGTGCCTTAGGTTTGGAGTTCCTCATGTAAAGGGGAGCTTGGTAAAAATAGGAAGAGAGATGCTACAGAAGGCACACgggaagactgaaatatgtgagcaggtgtctccaatcctgagaccatgtgaaggtgtgaatagatcccttctctgttgtttcgg-----ggatgaaacagtgaatggctagaaagtcag-ggtagcaaatctgaactccaactggagaaagaatttttaactagctattttatgaacagctggagtagcttccattctatccacattaaatgtactttcaaaga
s HiC_scaffold_1 129518147 1404 + 233722169 TGAGAAAGTCGTTTGTGGTG-GTTATAGTG-------TGCCCTGGTCTGATGGAA-AGCAATGTCGGAAATATGTTTTTAGGATTGATAATGAAGGACCTCAAATATCACATCAAGACCTTTATCAATAGCAATTGAGGAACc---atcaaaatttttcatcttgGAAT-GTGACCAGACTTGTGATTTAAAAGGAATTCTTACAATAGAATAAGAGAGTAAGCCTA-AAGGCATAGAGAG--TAACTGAAAGATCATTAAAGATTTTCAGGTAAGAGCTGAGAAAGGTCTAAATTAAGGCAGAGGCAGCTTGAATAGGGAACTGAT-------TTCAGGGTTAGGATTGTTGGGTCTTGGGAACCACAAGAGgttgaggagaaaa-agaaagatagagcTGACTCTGAGTTTCTGGTTGGATGTTGTGTGGGCAAGACCGGAATCGATCCCCTGCGACCTATAATTGATTGGCCTTCCTGGTTTACCTCATTCCCTTCATTGACCTTTTTCCCCAACCTTAACTCCAAGACAGTGCGTCCCTTCTACTTTGGGCTCATTAACACCTCTTTTCATTCACCAGGTAGAGCACTGGCTGGCTAATCAATCTACATGAGCAACCTTTTC-TTTTTCGGTGTGTCAGCAGCTGAGTATCTCACAGATTGGTTCAATATCCTCTCAATTCTGTCAAAACCCTTACAGCATGCATAGAGAGCTACTTCTTTGCCT-TACAAGTATGTTCATCTGCTAACAGCTTGATGTAATACTTTAATTCATTCAACTTTTTCCTTATTATCCTTTCATACCCAGTTTTATCAGTCCATAGGTGACATCAAATCCATCTTCTGTGATCTCTGAAgctttactttttgtctttatgtaagacataGATTTCTGACAGCG-------TACTGGACTGAGTACTG-GGGAGATAAACTGTGAATGATGGGTCATTTCTTACTTTTCCAAGCTTA----CAAGTTGGATGAAGATGTGAGACTTTtcatccctttttcttcttttcctttctcacttTATCTCCCCCTCAATCCTTTCTGGTATTGCTGCTAAAATGCCAATAAAATACATCGTTCTAACCCACGAAAAGTGATCATAGGGACAACTGTTTTTCCTGAAAACAACCCTGACGCAGGCAAGTGT--GTCCAGTAG-----TAAGCTCAGAGAGGACCACTTATGGCG----CCATGGAAACCAT-GTTGTATAAGAACGAGACAAGAGGCGATGGTGAGATAAACCTGGACAAC--------------------CTCAAATTTGGAGGCATCATGAAGGagtgatt-------ttctttattgttccAGAAAGTGGAAGCAACA-TGAATGGGTACATATTTGGTTGTAGCCAATTTACACTCAAAT----GGATAAATTTTCAGTAGGTCATTGTGTAAATGATTGGACT-GTTTCCATCATCTCtacaataaat---cttttaaaaa

a score=24658
s chr3           143307114 976 + 160039680 TAAAGTATTTTATTTCACAAATACCAGTGCTTAGCCAACATAGGA-ACTCTAT---TTCTAAGTACTTTTGAAGTTAGTAAttggccttcacaactaccatgtgaaaccagggaggttgaaccttcacttaccagctgagaa-gattaaggcCACATACAGTTAGA--CACCAAGTCGATTTTTTTTTAAAGTTTTGATATTTTGTGTATTTTTAAAAGTTGCTTTGATCCTTTAGTTTTAGACAAGAAGGCAGGTATTTTCTATGattcattcattcattcattcattcattcattcattcattGATATTGTCCTGAATTTAAAGGTAATTTGTTGTTGTTGAGGTTGTTGTTTTGTTATGGTGGGCTTATTCTCTCAGTTAAACTCATAATTTTTCAGTAAGCCTAGACACAATATATTAAAAATTGTAACCCATTTTGTCAGTCTGTAAAAAATGCTTGAATTATTAAATTCCAGATAAACAGATACATTTCAGTGCTCTTAACTACCCTATATGCT----ATAATTATTTTT-TATAAATGGAAGAAAAA-AATCAAAGCCAACTTGTTTGCCATTGGCTAAATCAATTTGAAGTTTAAATGACACCATTTTTATAATCTATTATTTGGCATGCAGAAATATGCTAAATTACTGCATCAGCACTGAGTCATTCAGAAGAGTGTCTGCTGGAAGATCACCAATAGAGTCCC-AGGCATTGGATGCCATCCCTACAATGACAGTAAACACTGAGTTGGC-TACATGGAGGCTGACATTTTTACTGAAACATAT----AGTTTTTCAGGACTTCATCAGATGTGACACTAGAGATCCCAGCTTCAAAAGAATGTATTTGTCAAC----TTCATATATTAATAATCTAGGCACAAC--CATCCACATCACATCTCAAGTAAATTAGAATTTGTTTTAAGCAGTTTTAGGAGAAT-TGGCTACTCTGGCAGGTGGTTCACTGTGTTGATAAAAGTGGAAAGTA
s HiC_scaffold_1 129520421 875 + 233722169 taAGGCTTTTTATTCCACAATT-CTAAGGCTTAGCATCCACAGGATACTTTATGTTTTCTAAGTGGGTTTTAAGTTATCAATTCAtattcaaaac--------------aatgaaattatatCTTTACTTAGCAGATGAAAACAATTAAGGCCATATGCATGCAGAATCATCAagttta---------------------------gcatttttaaaagatattttggt--TTTACTT----------------GTATTCCTTGACAGTGATTGG-------------------ATTCATTCTTTAACATTTTCCTAAATATCAAGTTGATT-----------------------------------CTTTTTCT--------AAGTCTCACTTTTATAGTTATTATAGAAATGCATTTTTAGAAGTTGTGACCAATTTTCTCAGTCtacaaaaa-tgtacaaattattaaattttatttaa-tagagaaaat---gtgttttaaaatacattatgtgcttcaaacaattatttttatggaaataaaagaaaaataatgcaagcaaACTTGTTTGCCATTGGCTGAATAAAGTTGAAGTTCAAATGACTTAGTTCTTACAGTGTGTTACTTGGCATACAGAATTATACTAAATTACCACATTAGCCTTGAGTCATCTGGAATAGCATCTGCTGGAAGGCCACCAAGAGAATCCCAAAGGGTTGGACGCAGTCCTTATAATGACAGTGAACACCAAACTGGCAAACTTTATGGATGGCATTTTTAATGAAacacattctatttttttcagaacatCAGCAGATTCTACATCAGTGATCTCAGctttaataaaatatacatatcacTATTGTTTATGTCATATTACTATATATTCAACAGCAACTACATCACATGTCAAATGATTTAAAGTTGATTTTAGGTTGCTTGAGAGGTATCTGGtaattttattgtatgtattaTCATAatattagaaatggaaatta

a score=222754
s chr3           143311958 7043 + 160039680 [encoded data, 7401 characters]
s HiC_scaffold_1 129523584 6705 + 233722169 [encoded data, 7401 characters]

a score=152612
s chr3           143320119 3821 + 160039680 TTATTCTTGCTTTTCTTATTCTTAAATTCACAGTAATGAACTTGCTTACAAGGCAGTGTCTTCAG---------TCTGTTTCTGTTTAAATCTTTGCACCAGCTCTGTTAATATAATGACTTCATTTCACAGATGAGAAAATGTAG--------AATGTAATTATAAATTTAAG----------CCTGACTTTTCAGTAAGTTAGATCTCTCCTGTGGTCAAAAACTTGGAattcattcattttttcctcattcattcattcattcattcatGTGCtatttttaagtgcctggtaggtgccatgaagtctatgtt--------------ctag-gtatccag------gagttgaagataatggactgtatggagtttatgttctagtg----agaaggagagatgacaaacaGGATGTTTCTGTAGCCGGTTCAGAATATTATTAAGAAATGAATGATGCACCAGAAAGGATCTCAAATGTGGTACAGAGTATTGAGA-TGTG-GGAAAGGTAGTGGAATGAAGCTTGGAGTTGGTTGGAAAGGGTTAGACTTTCAAG---------CAAAGCTCATGGAGCAAAGTGTTAGCTGGCCTTGTAGACAGTGGGAAGAAGGATGCTCTTGTCAGA-AGCATAGATTGTACAGATATCACCTGGTATTTCTGTGTAGGCTCTGTTAGAAAAACTGTGTGACCACTG-TGCTGGAAAA------TTAGTGACCAAGAGGGTAAGGATTCCTTATAAAGGTCCAATAGAGTGGACTCTGCTTACCAGTCAGGGCTCTG-----------------------aggcatggaagggctgtgagcagaggagtgctgtggtatggtatttgttct-agaggattaggttggccattttgttgagaatacacattag------aggaggaagcggggaaatcaAAAACTGCTCACTTCAGGTACTGTTCAGAAAGCATTAGACCATGCTTCCAAATTTCACTGGGTGTACATTAAACTTGGTCAGTTCATTTTCCATATAGCAAAATGAGTGTGCTGGGGAAACCTTGTCGAACACCTATTTGTCTTGGCCAAAT--TTCTTTCCAGCATCTTGAAGTCATTTATTAGGTAATGTTGGTGCTATAGTCAAAA-TGAGATTTTCTATAATAGTAACATAAATCCTGGAATTCCAATAGAAGATTGTATTAAACAGGAATGTGGGGGG-----------------TGGTATACTCCACCTTCATATCAAAACCAATATAGTCCTTAATTCCTAAACTGGGGAGTGATTTGAAG-TATTATGAATCCCGTTTTCACTTAAGGGCAGAATATGGGTGGATAAGGGACTTCCATTAGAGGTGACA------TAACTAGTAATTTAGGATGAGAATCATGGATAATTTTTTAGCAAACAAGGCATGGGAAATAGACACAAAATGTTTTT------------AGTTAATTATATCTATTGATATTATTATGCCCAGTCCCCAGCCCCAAGACTCACAGGGCAACCTGGATGAGGGATTTGATGTTGTCATTCT------------------GTAAACCGTATAATCATGCATTA-GCTCGTTTATGGATGTTCAAGTAACTTTATGGACCATGTTTAGGTTAATGAT-GAGCAGAAATGCCATTAAAATGGGATCTGATTATTTAATTCACCAGTGACATGCATTATTGATATTTGAAAAGCAGTCGCAGTCGCAACTTTTGTGGGTTTTGTTCATGCATTTGTTAAGATTT-CAGGCGATCT-----------CCTTCTCCCTCATCCTCAGCAAACGAAACAAGTCCCTTTAAAATGCCAGGTGACATATTCAAGAAGGCTTTCTGTTATCAGAACACAAGCGCCTTGTG--CTTTCTAAAGCTAATGCTGTTACTTTGAAATTTCAAGTGCGCTATGTGGCCAAGC----TCCTCGGATGAAATAGAGATTGCAGCATTTACTG-AAAGATGAATCATGATTCCATCATTTACTTAGGGATCCAGGGTTGGGAGT-AGAAGTACAGCCAAGAG--GAGATTGTTCAAAAATGATTAGATTACATCTGAAGGGTTCTTCCCTGTCATATTTGACTGGTCTTTTGACAAAAATTGACTAGTTCCATCATGGGGGG-----CATGGTCAGAAAAGAACAATCAATTGCCTCTTAGGAATATTTATGTTTGAAGGCTGGAAAGTGAGCCAAAAGGGACATGCATGATAGTCCTTTATTTTGAGGCTGTAGTTAAGAGTTAAGCAAGGTGCTGGAAATGCTTGATTCTATATTACGTATATGAGTGCTTACCTGAAATCCAGCCTCCATCCTAAGGCA--GTGGCTAAGAGTGTGTAAGTGTTAGTATTCTGTTGCCATCCTCACCACCACAAATCTACAGCCCACTATTTTCCTACCATACATTTCCTAATGATGCTTCTGTTGATAGAAAGCCCCAGTCATTTTTTATTAATGGATGCTGTGACTTCTCTCCACTTTCTTTCCATTGGCACAGCATTTACTGATTAAGGATGCTGGGTGAGTCAGAATATTCCTTGCATAATGCTTGGTTACTTGGAATGGGTACCAGCTCTTCCTTTGTGATAAAGAACAGTGTATATAAACAAGGGTAGGAGATTTTCTTGATGTTCAAGGTCTTTGCTCTCGGAGTTACAGACTATAAATTTCCTGGGCCACATTCGGGATGCTGAACTTTCCCCGAAGTCAACAGTCGTTTTGTCAACAAAAATAAATAAATAACAGCAAGAAAACGCCCCATTATTATTTATTACTATTTCTTTTTGACTGCCCTGAAGATAATTTGGTGCATAAAGTATTGAAGAAGTCTCAAGTTTTTCTCATGATTCATTTTCATGCAAATGTTTATCACATTTCTGGCTATTGTTTTCCTCTATCATATATATTTCCGTCGTGCATGGGTAAATCAACATCTTCATCCATATTGCACGTTCAGCGGCTGTAAATTCAGCCTGTATTCTCATTAAATGTTACGAATATGTGATTTTCATTTATGATTTTAGTGGGTGTTTCTGCGATTTTCCACTGCAGCATCTGGCCAGGAAATAGTGTCTGTGAATTAGAATTACTACAACTAATTTTATTTTTCTTTTGTAGACTCACTTCTGTAATTTCCTCCTAGCAAACAGGAGGTAATTTGGATTTCTTTCTCTCTTTAATTCTCAGAGA--------CTCCTGAGCAGACTTTAGGTTTGATTTTGCATACCCTGGTATCTATGGTTTAGAGACAGATGGAAGCAAATTCTGAGTCCTCCCTCCTTCCACACCCACATCCAAGCTATGTGGCG--------AGTACGAGGGTCTCCTAAGAGACTGTTCAGTACATTTGGCT--------------TCTCTGGCTGTTgctgtcagagcaatcttttaaaaatgcagctattattctacagctccctgctttaaatgctccatattgttcttgggataaagatcaaattcctgagtgtagcttatggagctcggcttattctggcctccatgtgcttctccagaccgtcattccacccttt---------------------ccctAGGGAACTGGCTTGGAGGTTGC-CAGTCCCCATTTTGTTTCCCCTCCAGGGCTTTGTACATGCTC---------CTTGTTCTACTCTCCATGCT-------CTAAATATTTTCTGCTCATCTAT--GATCTCTGCCTAAAGTTCTCTTCTTTGAAAGATCTTTCTTATTCCCATGAATGAAATCTACATCTCCAACCAATTTGACCT-TCAGTTTTGGAAATACCCATCATGCCTGTAATGTTTGCTCACTTCTCATCTCTTCCCCACAGACTGCTATC----TAAGGTGAGTGGCTATTGTGCATG----TTATTCCTTTATTCCCAACATCTTGTAACAAACAGGTACCAGGGCACATCACAGCTACATGATCTGAGAGTGGTGATGGACTCCCCATTCCTTCCAGTTCAACCACTGTCCTGAGCTGctcttctcttctcttctcttctcttctcttctcttctcttctc
s HiC_scaffold_1 129531042 3965 + 233722169 TTATTCttgcttttcttaattttagacaCAAAATATTGCATCAGTATGTAAGGTACTGTCGTAAAGTCTtcttatttgttttctctttaatcatTAAAATAACACTGTTAGTATAATTACTcctttttacaaatgagaaaatggaggcttaaagaatttaaatttaaaattaaagttacaTGACCCTGAATTTTCAGCATACTAGATCCCTGCTATATGCAAAAACTTGgaattcattcact-----------------------cattcaactAATACTATTAAATACCTACTATGTGTCAT-----CTATTTTTCCCCACTCTGAGCCTAGAGTAGTCAACAAAATGAGCTAAAATTCATGT-CTTTGTGGAGTTTAAATTCTGGTGGTGAAGAAGGAGAAGACACTGTGAGAAGG----------------AGAATGTGAGGATGAGACGA-CGCAGCTATGGAGAGAAGCTGGAACAGGACAAGAGGAGCTGAGAGTGTGTGGAGAAACAGTGGAGTCTAATTTTATAGCAGATGGGTCGGGCTGGCTGCTGAAATGTGGCTGTCAAACATTTTGGG--AATGAGATCATTAATCTTTTTGATATGAGAAAGAAGAGAACCCTAGTCAGATGGGACAGACAATGCAAAAGTCCTGACGTGTAAATATGTTGGCTCTAT--------------GTCCAGTGAGGCTGGAGACATTTACTCAGCTCCCACTGAGTAAATGACAGATCGGAGAAACCAAACATACCAGGCTAGAGACCCTGGCCAGGGCTCTGGCTCACACTCTTCATGGAGGGAGAGGCATGGGCAAGTGTTGAGCGGAGGAGTGACGCGATGTGATGTATGTTTGGAAAGCATTACTCTGGCC-TGTTGT-GAGAATATACTGTAGGGGTTAAGGAGGAAGCAGGGAAATCAAACACTTCTCATTTCAGGTACAGAATGAAGTGGATTAGAGCACGCTTCCAAATCTCATTTGCTGTACATTAGACTTGGTTAGTTCATTTTCCATATAGCAAAATGAGTATGCTGGG-AAGCCTTTTTGAATACCTATTTGTCTTGGCCAAATACTTTCTTCAAGcattttgaagtcatttatttGGTCATGTTGGTGCTATAACCAAAAATGAGTTTTTCCATAATAGTGACATAAATCCTAGAATTCCAATAGAAGATTGGATTAAACAGAACTTCTGAGGGGAGGAGGGGGCAGTAGATGATATATTCAAACTACTTGTCAAAACCAGTATAATTTCCAGTGC--AGACTGGGTAGTGATTTGAAAACATTACCTATCTAGGATCCATTTTAAGGCAGAATAGAGGTTAATAGTGGAATCTCATTAGAAGCCATACGCTATTGTGCAGCA--TTAAGAGCAGAATCATGG-----TCTTTTGAAAGCGAGGCATGGCAAACAGACAAAATGGGATTTTGAATTCACACTGAAGTCATTTTAATCACGGGTATTATTATAC--AGTCCCTAGCCCTCAGACCCACAAAACAGCGTGGGTGAGGAATTTGATGCTGTTGTTCTTATTGAGCAAATAGAACTGGAAATCACATAACCTTGCAGTAAGCTCATTTATGGTTATTCAGGCAACTTTATGGACCATGTTTGGGTTAATGATAGAAGAGAAATGCCATTAAAGTAGAATACTATTAGTTAATCCACTGGTGACATGCATTAGAGATACTTGCAAAGTAGTGGTG------ACTTTTGTGACTTTAGTTCATCCCACTATGAAGATTTGTAGGTGTTTTATATAAACTAGCTCTCTCATTCATCCTCAGTAAATAACTCAGATCCCTTTAACCTACTAGAAGACATATTCAAGAAGGCTTTCTTTTAATAGAACACGActgccttgttttctttcaaaatgcaaTGCAGTT----TGAAACAGTATGTATACACTGTGACCAAGAAGCATCCTGAGTTGAAATACAGATTGTGCAGTTTATTGGAAATGtgaatcatattttctttatttactctATGGTTCAGGGTTGGGAGTGAAAAATATAGTAAAGAGAGGAGACTGCTAAAAAATTATTAGGTTA-ATCTGA--GGTTCTTTCCTTTCATACATGGTTTTTCTTTTGCTAAGAAATGACCAGGTCTTTTGCAGGGGAATGAATATGCTCAAAAAAGAATAGTCAGTTACCTGTTAGGAATATATGTGTTTGGAGACAGGAAAGC-AGCCAAA-GGAAAAAGTAAGGCAGTTCCATTTTTTGAGACTGTGGTTGATAATTTAGCAAGAAATGGAGACAGCACAGTGCAGTGTTAAGCATGTGTACAGTTACCTGAAATCTggtatc-attttaaaacaaagtggTTAAGAGGGTATAAATGTTAGTATTCCATTGCCATCGCTGCCACCACAAATCTACAGCCTACTATTTTCCTACCATACATTTCCTAATGATGCTTCTGTTGATAGAAAGCCCCAGTCATTTTTTATTAATGGATGCTGTGACTTTTTCCCACTCTCTTTCCATTGGCACAGCATTTACTGATTAAGGATGCGGGGTGAGTCAGAATATTCCTTGCATAATGATTGGTTACTTGGAATGGGTACCAGCTCTTCTTTTGTGATAAAGAACAGTGTATATAAATAAGGATAAGAGATTTTCTTGATGTTCAAGGTCTTTGGTCCCTGAGTTGCAGACTATAAATTTCCTGGGCCACATTCAAGATGCAGGACTTCCACTGAAATCAATAgaggttttg-----aaaaaaaaaaaaataacagcaggaaaatttcctattattattttttattatttcattttgactgCTCTGAAGATAATTTGGCACATAAAGTATTAAAGAAGTTTTGAGTTTTTCCAGTGATTCATTTTCATGCAAATGTTTATCACATTTCTGAGTATTGTTTTCCTCTGTCACATATATTTCCATC-TTCATGAGTAAATCAACAGCTACATCCATACTGCACATTCAGCGGCTGTAAATTCAGCCTATATTCTCATTAAATGTTACGAATATGTGATCTTCATTTATGATTTTAGTGGGTGTTTCTGAAATTTCCCACAACAGCATCTGGCCCGGAAATAGTGTTTGTGACTTAGAATTACTCCAActaattgcatttttcttttgtagagtcacttttctcattttttctgagCAAGCAGGAGGTGATTTGGATTCCTTTC-CTTCTTAATTGTCAGAGATGATTTTGCTCATGAGCAgactttgggtttgattttgtaTTTCCTGATATGCGTGATTCAGGGAAAGACAGGAGGAAAT--TGTGTCCACTCCCCTGGCACAGCCACATCTAACCACTGTCATGGTTTCAACAGTTCAAATGCCTCCTAGGAGATTGTTCACTGCATTTGGCTTTTGATCTCTTCTGTCCCTGGATGCTAT--TTAGAataatcttttgcaaatgaagatATGATTCTACCACTCCCG--TTTAAATCCTCTA------TCCTGGGATAGACACCAAATTCCTCAGTATAGGTCATGGAGCTGTGCATATTCTAGCTCCTACAGGGCTTTCCATGCAATTATTCTGCCCTCTCTTCCTCGCTCTCTATTCCAGCCACAGGGATCT-GCTTTCAGTTTGTGAAATCATCACTTCCTTTCATTTCCAGGCCTCTACATAAGCTCTTTCTCTTGCTTGGACCACTATCCGCTCTCATACTCCTGAATATATTCCACCCACCCTTCAGATTTCTGCTTGAAGTCCCCTTCTTTGAAAGCCCATTCCTACCACTGTTGATGGACACTACATTCCCAAAGTGTCCTGCATGTGACTCGTAGAAATAGCCATCATACCTATAATGTT---TTGTTCTGTATCTCTAT----CAGATTGCTATCTTTGTAAGGCTAGTGGC-ATTATATGTGTTGTTTATTGCCTTACTCCCAGCACCTGGCACCAAAAAAGAATTTGGACACTTCATCAGCACATAATAT----ATGTTTATTGACTTCCTAATGGACACAGTTCAGCTACTGTCCTCAGTTGCTGTTGTCCACTCATATCATTGCATGTGTGCTCATCTCTTTCC

a score=43041
s chr3           143325966 2126 + 160039680 AAAATGTATTAGCTCTCACCCATACCCAACTAAAATTATATTTTGTATTTCTTTACAGGAGATTCC-AGACAGGAGATATTGGAAACTATCAAGTTACAA-ATTCTAAACGCTAAGCTTTTGATGAATTA-TCATTTCCC----TTAATTTTTCTCATAGATTTAACTTCACATCTTGAGAATTTTTAATA----CTTTGGGGATTTTAAAAATATATCAGGTGTAAATACTTAAATATGCCTACTTGTTCTACTGCCAGAGTGTAAAATTGGCACAGTATGTCTAAGAGGAAAGTTTTAATAAGTATAAAAAATTTTGTTTTTATGC--------------TTCTACTTATGG--ATTCGACCTGTGAAA-------TTC-------------------------TATCCTATGGAAGCATAA---------------------------------------------------------------------GTTTTTA----------GAAGCTCTTAGGACATAAGAAAAAATCTGCTGTG-CATTGAAAGATA-GAGGTCACAAAATG---------ATATGATTCTTAATTATATAACACAAGCAAACCTTCACA-AGTATAGATATGTGTTTGTAACTGTACAGTAAAATCACCTCAAATCGTTCTTCCCTTGGCAATGG---TTTTAGTGGAACAGAAAAGA-CATAACCAAACATTAACTGTCACCTTGTCATACCCCC-TTCTGCCACCTCACACCACATACACCATC--------CCTGCAGTTTTCTAAAACTGACTTGAGTTCCACAAGTT-CTCATTGTTGAGAGAAAGCAACCACTATGGTTCAATCCTTCTAGTTAGGGATTTTAGGTTAGAAGTGATTATTTAGTCAAGGGCCAAGCCATTTCCTGGGTGACATTATCTTAGCCTCTAAAAAGGTAATTAGGATCATA-Gtatttaaggtgtacaccactatcctttggtgtgcaaatatttagtgagctgattaatagcatcaaagtaattaacagatctatcccgtcagttatttttctgt---tgtatctgatgaaaacattcacagtatattgttcttagcaaattctgagcacacaatc--tgatgttatctatagtccccaagctctacactaggtctccaggacttactcatcctataggctgaactgaaattttgtagactccggcaaacatTACTCAGCTATCTCACCATCTTCAATGTCTCACTGGCTTCCATGTCTGCTCCAGAGGTAGGCAACTAACTTCTTTTGATGCAGTCAAGAGAA--GCACAGGCTTTTATTCAATGTTTGGATGGGACATATCCA-TCTTCTCCAGACACCAGTGTATTATCACGTGGTCCAGGTACCACAACCAGCAACCATATAGTTGGAGAAGACTGGAGGATATTTTGTGACCACAGCAGAAGCCAGCATTATAAGGA----ACATACAGAAGGCAGAACAGAGGGGTGGAATGAGACCTGTGTCTGGTGATATTTGTAGCTTATTTGTGTAGATGGGCAGATGCATGGGCCATCTGAGGTCTGCCTTCATCCTGGGATGGTTTGTACATAATGCAAACAATTTAAGGTAGACAACATTGAGGCTGCTATCATGCAAAAGCAAAACAAAT--ACAGCAAATGAATTGATTTGAATTTTATTTTTTGTGAATTACAGTATTTTAAAAAGATG---TATTATGAAGACACATTGCTTATATAATTGGAGAATATCATTTATTTTAA-AATTGCCATTAACCAAAAGTTGCTGAAGATCCTTTAAGCTACAGTGCCTTCACTCCTTACCATCCTGCTTCTCCCCTACTTCCTTCAAGCCTCTTCCTGAAATTCCCACAAGAGCCAGAGAAGCCAACAAAATGTCAAAATTTTGTCACTCCATTAATTAGGAGACTTGAATTGGGTGAGGCACAACCTACATTCTGTGAAATTGATTGGCAAGTGACTGGCAGAGCCACCCTGTAGCTAACAGGGCAGTGACAGAGATGGGATTGAT---TACTGTTTGTCATTATGTGACTCAGTCTCGTGGCACGG-ACTCAGGGGAGGATACACAGACACATTGACTCT--------------------GATTCGAGAAGCCAGCAAC--AACAGGACCCTTGATGGCTGGGTAGTGTGGGCTAGTGGAGGAAGTGCAT-----------ATCCTCAAAGTTATAAGTAAACGTAAACATGGTTCT--------AAATTGTTTAGAA-----------GATGTGATGGAGAGAAATGGGGGTGAGCCTGTCCAA-GTATGGACACTTTCTGAGGGAGGATGTTCTTAGA
s HiC_scaffold_1 129536872 2153 + 233722169 AAACTGTCTTATGACTTCCTCACAT--AAGTATGACCTTATTCTGTGTTTTTTCCGATTATAGCCCTAGGCACCATAAGTTGAAAAAC-TTGACTTACAATATTCTGAATTCCAACCTTTTAATAAattagtgatttctcctttttactTTCCCTTATAGACTTAACTACCAACCctaacaacatttaaaaaattttttagagaTTT--AAAATACAACAGGTGTGGAGACTAAAATATGCTGATGTGTAATATTGCCAACCTGTAAAATTGGCACAGTGTTTCT------------TTAATATATATTCACAATTTTGTTGATGTGCCTTCCATTAAACATTTCTAGTTCTAGTACTCTAACCTATGGAAATGAAGCTTCATGTAAACAATGGTACATGTGCAGATGGCCTATGGTAGCTTAATCagtaaatgagaaaagtaaaacaagtTAAGGAATACCCAGATCTTTGCTGTTATTTATGTTCCATgcagtttttaaatattacaagAAGATTTGATGACATaaaaaactttcctctttttcagtgaaaaataagAGGCCATGAAACAGTAAATACAATATAATTTTGA----TATAATATACACA----TCCACAgagtatatgtatgtgtgtggtgcTATGTAACAAAAATGTCAACAATAGCTCTTCTCTGAACATTGGGAATCTAAAGAGTACACAAAATATCATGACTGA---------------TTTTCCTACTTCCATTCTGTAATCTCTCACCCCAGAC--CATTGGCAACAGCATGCA---TCCTGATCCCCATTTGACTTTCACAGGTTGCTCATCACTAGGTCAAATCAATCAGCAC--------TTTTCTAGAAGTGGCTTTTACATCAGAGGTAGATATTTAACCCTGGCTTGAGTCACTTACTATATTAAATTGT-------------------ATTGAAATTGTATGCATTTAAAGTATACAGCATGATGTTTTGTTATACATAGGCATAAGGAACTGATTACTAACCT------AATGAATGTATCTCTCCAAATAGTCCccttttggggtgtgtgtgtgat-agAACA----------------CTTAGCAATTTC-AAGGGTACAATTAGTACTACTCACTGCAGTGTC-ATGCTATATCTTAGATTTCTAA-ATACATACATCCTACAG----AACTGAAACTTTGTACTCATCGGCCAGTATTTCCC-------TAACACTCT--------------GCCTTAATGTCTTGTTCAGAGGCAGGCATACAGTTTTACCTGGTAGaatcagaaagaatgaaaagacctCTTTTCAATGCTTGTGTGGGAGATTTCCAGTTTTTTCTGGACATGAATGAAAAATCATATCTTCC---------------------------TGGGTGATATTTAAAGAGATTTTGTGACCACAGGGGAAGTTAGTTTTAAGATGATCCGACACCCAGAAGGCAGAGCAGAGAGGTGGAATGAAGC---------------------------------AGAACAGCA--------------CTGACGTCTGCC-----CATGAGCTAgcatttacctta---aaatcatttaaagtaaGTGGCATTAAGGCTTttataacatgaaaataaaataggtgaaaAGTAAGTaacctaattttaattttattctttatgtttcCCAGTAGTTTTAAAGGATGCTATATATTGAACCCATATTgcttttataattagaaaaaatgaCTTACTCAGACAATTGCTATTAGCTAAAAACTGGCAAAAGCACATTAACTCGATGCCTCTTCTCATCTTATTCTCCCCCTTCTC---TACTTCCTTCAATCCTCCTCCCCAAATTCCCACAAGAGCCAGAAAAGCcaacaaaatgtcaaaattttgTCACTCCATTAATTAGGAGGCTTGAATTGGGTGAGGTGCAATCTACATTCTGTGAAATTGATTGGCAAGTGACTGGCAGAGCCACCTTGTAGCTAACGGGGCAGTGACAGAGATGGGATTGATTActactatttattgctatatggCTCCTTCTAAAGGAATAGTAACAATGGAAGGATTCACAGAAACACTGATTATCTTACCCCTGGAGGACAGGAGATTC--AAAACCAGCTCTTGAACAG---CCTTGCTAATTTGGCAGAATGGTCAAAGGAAGAAAGCCCATGAGCAATGAAGATCTCCAAAACTAGAAGGAAATGTAAGTGAGGCACTTACACATCAAACCGACTAGAAACACAAGGCATGGTGCCATGGACAGGATGATGGATGAGGGGGTTTAATGGAGGGGTATTATATCAGTCAGTATTTTACTAGA

a score=31562
s chr3           143328059  957 + 160039680 TATGGACACTTTCTGAGGGAGGATGTTCTTAGACAAAAGGTTAATGGCAAGAGAGAAG-------GAATTCTACTGAGAAAGTGATTTAGAAACAGAGTGGAGGGAAAGAGACCTGTGGCCAAACA-CCAAACACAGTTAAGCTGTCATATACACAGCAGTGGCTAGCACTTCCT-----GCAGAAGGGTGCTGAGAGCAAAATGGGACTGATAGCA-----CTTATCCACA-CCAGACTGTTGTCTGCATCTAGACTGTAGTTGCT---GCAGGGCTCCAGGTAGCTAGATTTAAGGTCTTCAGCTAGACTC---ACATCTCTACCATTGACTTTTCTCTTGCATGAAAGTGATGAGAGATGGATCAGGATCCCCTTGGAATGCAGCCAGTCAGCTGTCACACTTTTCAGATCTACAGTTGGTCCATCTACCTGCTCATCTGCACATATCAGCCAAGGA---------------------------------------GGGTCTTGTTGTGG---GGAAGGCATCTTCCCAGAGTGGT--TCTTAGGG----------CTTTTGAAGTGAGTTTGTTCTTCCTACAGCTGCTCTGCAGAGGGATAAAAACCTGGATTTTAAAGAAGCAAATGGTC---TCTTTTTTTCTTTTTAAACAAAATTAACTCACAGCTGCAAGCAGCACAATGAAAGCACATTTAAAAATAATCAGATGCTTTTTGAG-CTCTGTCTTCTGCCTGAACAACTTCAGTCCCAGCCTCTGTGGGTTGGGATTTAAGGCTGCAGCCTTAGACTCCAAAACATCCAGGAATGAAGCAACACCTAGAGCTGTGGCCTCAGAAGAAAGGTGGGCAGTTCTGTGATGTGGAAGACCCCCAAAACCTTGGCTG------TATTTGTTCTTTTCTAATCAGGGTGCATAAAATATTTTTGAATGTCATTTGGCAGCTGATAGTTTGCTTTGAAATTGCCATTTTATCAAATAC-ATTAAAAAATGCCCAGTGATCTTTTTAGGTTCTATTGAATCAACTGATCTTTATT
s HiC_scaffold_1 129539450 1008 + 233722169 tacaggTATTTTTTGAGGGAG-----TCTAAGGCAAATGGGGAATGGGAAGAGAGAAGTGGTCCAGAATTCTACTGAGAATGTGACTCCCAAGTGGAACTGAAGGAAA---ACAGGAGGCCAAGGGGCCCAGCATCTTAAAGATGTCGCATGGACAGCAGTAATAAATATTGCTTTGTGGGGAGATGATTGCCTACTGGTAAAATCTAATGACAACATCTCACTTACTCTCAACCCTATTGCACTCTGCTTCCAGAATATATATGCCATGGCATTGCTT----TACATAGAAGTGAAATCTTAGGTCAGTCACTTAACTTCTCTGCCTTTGAGTTTTCTCA-GCAGTAAATGTTTGAGGGTTGGCCCAGAGAATTTCTG----------AGGCGGCTATAATGCTTTGCAAATCCACAGTTGGTCCATCCACATGCCCGTCTGCCCAGATCAGCCAATGATGGGATCCCTTGGAACCTTGGCCTTTTGGAGTACAGAATGGATTCTGTGGTGGTAAGAAAGGCATCTTCTCAGAGTGACAATCTTGGGGACATGGTGGGCATTTGAAGTGATGCTGCTCCTCTTGCAGCTGCTCTGCAGAGGGGGAAAAACCTGGATTTTAAAGAAGcaaatggtcttttttttttttttttttaaacaaaattgacTCACAGCTGCAAGCAGCACAatgaaagcacattttaaaataatcagatgCTTTTAGGGCCTCCTTTTGCTGCCAGAACAATTCCAGTCCCAGTTTCTGTG-------------GGCTTCAGCCTTTGGCACC-AATTGTCCAGGGATGAAGGAAGGCTTAGGGCTGTGGTGTCAGGAAAGAAGCAGAAAGTTGTATGATCTAGGGAACCCTGAAGGCCttgactgtttgtttgtttgttctgttctAATTAACAGGTGTtacatatttttgaaagacatCTGACAGTTAGtaggttgtttttaaa-aatcatttcattaaatacttttgaaaaaaattcgGTGATC-ATTGAAATTCCACATTAGTAAGCAATCTTTATT

a score=93145
s chr3           143332537 2307 + 160039680 AAATGGTAAAGCA----TTTCAGCAAAACCTGGGCTGTCTGTCAAATTTCGTGTCAGAGAAGCATGTTA----CCTGTGTGACTCCTATTCTTATTGCCTCTTGTATTCTTCATGTCTTTACTACCATTGTTCTATGTCATTGGAGAGGATTGAGTGAGTTATATTTAATAGGCTATTATGCTTATAAACAGA-CCTAGATTTGTATGGCAATTCTTAGAAAATATAGTACATGTTTCGTTCCAAGGGAATGTGCCTGTATTAGACCGTCAGAAGTCAAAGGCGTAATTTGAAATGATGAACGCATCCATTTTAAGTTACACATTACTTTGCATAGTTAATATCACTGTAATTAGTCATAGTTCCTATAATTTATTGAAAAAGATGCTCAACCCCTCTAGTGTATTACAGTGATGAATGCTGGGAGAGCAACTTTGGAAGCTAGAATCAAGAAAATGAGTAACAGTTGGAGAATTAGCATGCAAATCAATAATATCCTTTCTTCTTCATGTTGGGATTGGGGTTTTCATCACACATTGAAAAATTTGAGAGCTCCTACAAGTTAGAGCTGTCACCACATTCCACAGAACTAGGCAGGGCCACTTCCACTGGAGGAAATGATTAAAATCCTCTCAAACATTTGAGTAAATCTCTAGTAAATATTTAAACTCTGTATAACTAGTCACAAATAAATTAAGCTGGTTTTATGCAGTCTCTCTAATTAGAAGGGCACAGCATTTGTTGAAACGTGATTAGTATTATTCATTAAGCAAAAAAAAAATTCTCATTTGTATCTTATTATCACCATTCTGCATAAACCAACACAATTTGTCATGAACTCCCTCATTTGCTGTATCCTCAAAAAACAGATTATGCTTATTTTTCATTTGGACAGTGGAAAATCAAGCCAGGTGTTTGGCAGCACCAGACTGTTCAGGTGTAACTGTGCCAGTGATGGCACATTACGAGCGGCGTGGATGAAGAATGAGGCATGGAGAATCTGGGGACCAAGGTGCCTGGAGGCCCCTCCCTTCCCAGTGCCCCTGCTGATGAGACAGGTGTTACACTGGGCCATGGGGAAGGGGGTGGGACTGGAAAAAGAACTTTTTTTTTTTTTCTGTAAAGTCAGATCTTTCAGGCTTCCTCTCCATCAGAACCAG------CTTGCTGGGATTCTGGCTACACTACTGCTGTGCAGCC--------------CTCCAGAGCAAGGCCTTGGCCTGAAATGTTTCCAAAACATAAACATTTTAGCTCTGTGATTTATCCAGGAGTGTCTGTCCATCTTGATACATAAACACTG--CAAATTTGGCTTTTAAGAATTATAGACAATGACAGGCACAAACAAAGACTATTTTCTATGATCTGGAAGAATCGAGACTGTACTCTGGAGTTCAAAGGGAGCCGGGTACAGTACTCCACCTTCCTCCCTTCTTCTTTTGTCCTGAACATCTTTGGTCTTAGCCCAGATGGAAGATTCAATTAGGGTCTGTG---CTGAAGTTGTTTTACTTAGAATCCAGACAGAAACAGCAACCCCAGTGCTGTAGAGTCTAGAAAACAGTAGAAGAGAAAGAGATAATTACCATTACTTTTTAAGGAAGAAG---------------TACTTTGGGCTTTGTGAATTTTGCTACAACTCTATAGCTAGAAGGGTCTGGGTCCTTGCTCTGGCTTCTAAGCATCTATCTTCTTTTGTTCAGTTTCTTTTGTTAATTCTTTATCATCTTCTGTTTCT----GCCGTCTGCTTATTCTGGGTCTTT---CTAACTACTTCATGTGTAGCTGATTTTCTA--AGTCCAAGCATGAAGAAAGATCTGAGAataatatactataattaatacaatataattaataatatattacataacagaacataataaaatataatatgatataatataacataatCCTATAATAAAATACTGGAGTTAGTATAGTTTTTTCTAAAAGCATACACAGCACAGGATTGGG-TACAAT----AGTCTCT-ATATCTCCTTGATATTCAAAACCAGACAAGTACACTGGCTCAGCTATAAACACCTACTTACAGC----AGATTgaaggcaggttacagctcagctgaggaagcaccttctatatgaaactgcccagatatgaaatggactgtgtaatgaggtggtgagcttcccatcaccaggagcactcaagcagagtttgTACTGAAGGTTTGTTTCAATGTGAGAAGTTCCAAATTCCTTTCCAACACTAACATTCAGTTGCTGATCGTCCTTTTTAG-AAAGCTGTGCTTACAGGGC-----CTCATCAGCAAGCAGGGGTTATATTCATGAGGATAGGATGTA-GAATATTCAGGAATCTTA
s HiC_scaffold_1 129541636 2162 + 233722169 AAATGGTTCATCAGACTTCTCATGAGAGCCT---CTTTATGTCTTATTCCATGTCAGA--AGCGTGTTGTGGTCCTCTGTAGGTTCTTCTGTTA--------------------------------ATTGCTCTGGGTCATTGAATAGGCTTGAGATGGTTATATTTAGGGGGTCATTATGTTCATAAGCAGAACTTAGAATTATAAAGAGGTTCCCAGAAAATAGAGTGCACATTTAGTTCAAAAGGAGTGTGTGTATATTAGACCATCAAAAGTCAAAGGCATAATTTGAAATGATGAACGTATCCATTTTAAGTTACACATTGCTTTGCATAGTTAATATCACTGTAATTAGTCATAGTTCCTTTAATTTATTGAACAAGATGCTCATCCCCTCTAGTGTACTACAGTGATGAATGTTGGGAGAGCAACTTTGGAAGCTGGAATCAAGAAAATGAGTAACAGTTGGAGAATTAGCATGTAAATCAATAATGCCCTTTCTTCTTGATTTTGAAACTGGGATTTTCATCACACACTGAAAACTCAGAGAGCCCCCACAAGTTAGAGCTGTCTCCACAGCCCACAGAACTAGGCA-GGCCACTTCTACTGTAGGAAATGTTTAAAATCGTCTCAAACATTTGAGTAAATCTCTAGTAAATATTTAAACTCTGTATAACTAGTCACAAATAAATTAAGCTGATTTTATGCAGTCTCTCTAATTAGAAGGGCACAGCATTTGTTGAAACGTGATTAGTATTATTCATTAAGC----AAAAAATTCTCATTTGTATCTTATTATCACTATTCTGCATAAACCAACACAATTTGTCATGAACTCCCTCATTTGCTGTATCCTCAAAAAGCAGATtatgcttatttttcatttggaCAGTGGAAAATCAAGCCAGGTGTTTGGCAGCACCGGAGTGTTCAGGTGTAACTGTGCCAGTGATGGCACATTACGAGCAGCGTGGATGAAGAATGAGGCATGGAGAATCCAGGGACTGGAGTTCCTTGAGGCCCATCCCTTCGGAGGGCTCCTGCTGATGAGACAGGTGTTGCATTGGGCTGCCGGGAAGGAGGGGGACCCAgcaaagtaactttttttttt------taaagtcaaatcaTTC------CCCCTCCATCAGAACCTGAAAACTCTTGCTTGAATTCCTGTGTCAAT-CAGCTATGGATTTTTGTGGCAGGAAGGTTTCGCAGCAGGACATTGGCTGGAAATTTTCCCAAAACATGAAAA-TTCAGCTCCATGA-TTGTCTaaatctgtctatctgtctagaCACATAAGCACTGTACATATTTGGTTTTTCAGACTTATAGGTCCTGACAGGTA-AGACAAAGACTGTGTTATATTATTTGAGTGAGT--AGACTGTGGGCTGCTTTTC--------------------CTCCTCTGCAGtctattctt-ttttgctttgaaatcttttcCTCTCTATTCAGGTGAGAGACTCCATTAGAGAGCTTGTAACTGCCGCTGCTTTAT----GATTCTGGCAGAAAGAGTG-----AAGGCTGTAGGATCTATAAAATAGTGGAGCAATAGTAAGAAATTG--------TTTTAAGAAAGTAATACACCTAAATATGCTACTTCagattttgtctgttttcttggAACTTTGAATTCAG-------TGGGACATT----TGTTATCTAGGCACCAA-----GtgtgtctgtttctctttgtcattTCATTGTCATATCTTATTTCTGTAAGCCCTGTGCCTGTCTGAAGCCTTTCTCCTCACTGCTTCTGATATGGTTGATTTTCTAAGAGACCAAGCATGGGGAATGGTGTGGGGAGGATATGC----------------------------------------------aagaaaatat--------------tgtcaaaatCGGGCAA-----------------------TTTCTCTTAAAACACATGCAGCACAGGAATGGGTTACAATGATGGGTTTCTAATATGCACAGGATCTTTAAATCCAGACTAGCAATGTAGCATGGTGCAACATTCCTCCTAACGGCACTGAAACTGAATACAGGG---AGGTCAG--------GCACAGCTCAGACAGAGCTGTTCAGACATGAAATAGTCTGGTTTATGAGGTAATGAGCTCCCCATCACTGGGTG--GTCAAGC--AGTTTGTGGGAAGAGCGTG----AACTAGAACAGTTCCAATTTCTTTTCCATGCCTAATAC----CTGACAGTTATCATTTATGGAAAAGTTGTGGTCAACTGTCTCCCTCCCACAAGCAAACTAAGATAATTTTGATATTGACAGAGTTTCTGAATATCCAGGAATCTCA

a score=34607
s chr3           143334936 1684 + 160039680 AGCAAAACACATGGTA----TGACTCTAGTTTTAGAATACCCTTCTTAATATTTTGAACCTAACCCTGACCAAC---AACCTTAAGGAGTCCTGTTTCCTGCCCTTTGAT-ACTGCATACTGACAAAGAAGTTAAAGTCCTATTCAGAAGTCCCTTCTTTTGGTT-----GCATTTCCTTCTCCAAAAATGATGAGTTGTCCAAGCAGTGGCTCCAGCCATGATGGTTTGAATGAA--------------CTTAGAGAATTTTATAAAGTTAGAAGACATTAACAACTTCTGAATTCAGGACTTTCAGTATGGTGT-AGATTAATTGCAAGCTAAAGAGTTAAGTACATTATTTTGCCAAAGAGGAAATGACTTTGAACCTTGCTTATTGGACATGCAGAATAAGAATTATAAAGTTTTTGGATGCTGTTTGTTAAATTGTGGCTAAAGACCACCTActtgttaaaacacagattcctgggccc------ATATGTTTtatattaattttcttattgt----gaacaagtgaccacta-acacccag--taatacagcttcaacttataatgtcagacttctgaaagtctgaaggccaggtgggcttcgctatgtccacttcttggggttccacaaggcccaaatgagtgcctgtcaagaccatattcttgtctgaagactagaggggaaatgtga--cccacactcactcaggttgttggcaaaattcacctcctccctacctatcagttggccatggttctctgctcctggagaccacccacctccttagcatctggctgtctccattttgaagtcagcagagacatgtgg---------tattcttagaacctcactgaattcttctgctgtgagtacatcagagaaaaccctgtgctttgcaagggcttgtccagt--acttggacctacaaagatcttctaaaatactctaagaaatgctcacttaagactttagttatatttgtggtatcctttcacagtagtacttaggttagtgatggattaaaacaacaactacgacaacaacaaccacggaa-aggactcttagagttctgtctcccacaCTAATTAACTCAGAGTTGCATTAGTGCAATC-----------------TGTCTTTTTGACAAAACTGCAAGTGATTCTAATGAATAGTGAACGTGTAAAACTATTAGCCAAGTAGGGTGGTAGAAAGGGCAGGAGATGTGAAGGGTTAGAGCGAAGATGCAGAAAAGTTCCAGATGAGGAGCCTCTGAAGACAAACGGAAGATCCTAGAACCTACAGGGCTGTTCTTGGAGACACTGGATCTTGTGCCATCTTGAAGGATGGAAGACACTTGAGAAAAGAGCTGCAGATGCAGG------AGGGTCGAACAAGCAGATGGGCAGGAGAGCAGGTGCAGAGGAGAACGGTGGTTCAGTTG---CTGAAGGGACAGATCCAGCATGACATTGTAAAATCTCAAACTCCTCCTCAAAGGGAGAGTTTAGATAGACT--TTCCTCAGGAAAGGATGGAAGACACTTAGAGAAGTACAGGTTTTCCTGGAATGGCAGAGGACTGAGAAGGGGAAAACATACTCTAATGGGCCTCACAGTGTGTCCTGCAGTGAGTCTGGTTGAAGAGCAGGTATGCAAAGCTGTGTTTGTGAGAGTTATGAGGGCAGGCATGAGGGTGGGGCTATACTACT--------------TGCTAAATTGATGAATTTAAATAAAAAGAAAACATTTTAAAGAGGAACCAT
s HiC_scaffold_1 129544328 1563 + 233722169 AGCATAATACCTGGCACTTGTGATTGCAGTTTTAGAGTACTTCTGTCAAAATTTCAGATGGAACCCTGATTCACTAAAGACGTAGCAAGAACTGTTTACTGCTGTGTGACCAGTGTACAATCTCAAAGAACTTATTGGCCCATCTAGACGTCATGTCCTCTGATTTTCtagcattttc-----------------attgtataagCATAGGTTTCAGTTATTACACTGGGGATGAAAATAGCTTGTCTACCTTGGAGA-TTTTATAAAGTCAAAAAAACCTAACTATTCCTAAG----AGAGTATCAGTGGGAGATGAAATTAACTGCAAGGTAATGGGACAAATATGTTATCTTGCTAAATAGGAAACTAGCATGAAGCTCACTTATTGGATATATAGAATGAAAATAATGAA-CTTTTGGGTGAAGTTC-TTAAGTTGTGGTTAAAAACCACCTAC-TACTGAAATGCAGAGTCCTGGGCCCAAGCCTAAATTTattatattgctttt-ttattgttatgtAACAAATTGCCATTACGTTAGCAGTATAAAACAACGTTTATTTATTATTGCATGTTTCTGAATGTTAGATATCCAGGTAGGCTTGGCTGAGTTATCTTTTTAGGGTTTTACAAGACCAAAATATATGTCTCACAAAGCTGCATCCTTATGTGAAGGCTCTGGTGGAAAATCCAATTCCAAACTCATTCAAGTTGTTGGCAAAATTCAGTCCGTTACTGTCTGTCAGTTGGAGCCTGCTCTCTGTTCCTGGAGGCCACCCACTTCCTTCGCATATGGCCCTCTCCATCTTTAAACCAGCACAGGCATGTGGAGGCCTTCCCATCCTTGGAAGCTCTCTGGATTCTTCTGCTGTCA-TATATCAGAGAAAACACTGTGCTCTGAAAGGGCTCATATGATTGGATTAGGCCCACCCAGGTAATTTAAGATACTTGAAGGCACATTGAC-TGAGACTTCAATTACATTGATAGTGTCCTTTTACAATTGTACTTGGGTTTATGTTTGATTA-------------------AATAGCCAAGGGACAGGAGTCTTAGGG-ACTCCCTCCCACAACTACTAAAACAGAGTTTCTACAGCACAGCCAAAGAAActtgtctctttgtctctttaaCAAAACCCCAAGTGATTCTGGTGAATAATAAATATCAAGAATTA-CAACAAAGC-------TAACAAAAGCAGTGATTATCAGGTAt----gtgatgatatata--------------------tatatatatatatata---------tatatatatatatatactttaagagtttgga-------------------gtgaaaggCCACTGAAAA-----CCATAGATTCTAGTCATTCAGGGATGAACATCC-------------------------------CTGAGCTCAAGTTGAgtctgaaagaaagga----------------aaacattcaaa--------gaaaggaagag--------aactggTTTCTTAGG-CAGGATAGAAGAT--------------------------AAGAGCAAAAAGCTGAG-GGTGGAAAACATG---TAAGTGTCCTTTCAGTGTACCATAAATTGAGGCTGGTGGAGTAG-AGGTATGTAATGTTAATTTTG----------GTGAAAAGGCATGAGGTTGGGGTTGTTATATTGTGTAGGATTTTTCTGCTAGGCTAAGggattagaaaaagaagaaatcattttaaagaagaataat

a score=8507
s chr3           143337391 365 + 160039680 GGGGCTGGTGGTCACCCCAGTGTTGTTAGAAGTGAAATCTTAGAGGCAGTTGTGCAGCTCAGAGCATTAGGGAGGCTACCTGGGAGCCGGGGTCCCTATCTCTGAACAGCAGATGAGAGCTGCGGATGCAGGAGAGTATGATCTGACAAGCACGC--GGTCAAGAGAGCAGGTGCAGAGGAGAGTGTGGTTCACTTGAGCGTTTTACACGGTGCTGTTTTAAGGTTACTGAAAGTCA-CCAGTGGGAAGCAGCCAGCAGAGCTGGAGCCAG-----------------GGTGCTCCCAGATGGAAGAAGAAAGAAGGCACATCCAGCCCAGCATCCTAAA-AGCTCAGGTTCCTTCTCA-AAGGAAGC-TCTTAGACTCCCCGCCATG
s HiC_scaffold_1 129547418 370 + 233722169 GGGACTAATAGTCATCACA-------TAGAAATGGAACCTGAGAT-CAATTTGGTAAGTTTGGGCAGAAGGTATGCTACTTTGGAGCCAGGTTCAATATCTTTGAAAAGCAGATGAAGGCTGCAGATGCAAAGGGGTATCATTTGACAAGCCAGATGGATGACCAGAGTTGGAGCATGGCAGAGT---GTTAATTTAATGACTCcagataata-------aatgaaaatgaaagcaagtTATTGAGAAACAGCCAGCAAAGCTAAAACTGGTGAATCTCTGGCCTAGTGGTGGATTGAaatgggaaaaaggaaaggacaaataTTGCTCAGGATTCTGAACAACTCAGATTACTTCTCAGAAAGAAGCAGCGTAGACTTTTCTCAGTG

a score=57834
s chr3           143341798 1152 + 160039680 ATTGCAGTTCTATCACTTAACTCTTTGATTTCACTACTTCCTGGTACATACCCTAGAATACTGATGATTACATTGGTCAATATGACTGGAGACACTGATACCATTTCCTGGGGCACACAGTTGGCTAAGGCTAGGATGCCAGGCTCAGCTTTCTGATTCTGGATCTATGAAGGTTGGGTGGTAAGGAACAGATGAACTTTTATATGTTTTTTCTCTCT---AATTTTATATTACCATGTTGAGTGGGTTAGGGTACATATGTATCCCCCTAGCCTTCCAGGTTGAAATGCTGAACACTTATATAATCAGCTAAAGAGAAAGAAGCCCCCACCCTCCTGCAGAAAGCCAGTGTACCTGGACCAAAGCATCCCA-ACTTTGCTCACAATCTTTTGGGGAAGAGAAAGCCTCTACATGCTCCTTTTTAACCCAGGACATTA-------TCAGA-GGACATAAGAGCTTGGATCTCTAGCCTGGGTGTGAATTTCACCCTCAAATGCCCCCAGTGAGTTCTG-TGGGAGTCTTGACGTACCACATTTGGGAGTAGATTGAAATTTAATCTCTGAGTAGGAGGACCAGTGAGAAAGAGTCAATGTTCTGTAAACTACTGAATAAAAGACAGAGAGGAAAAGACAGATAATAAGTATATGTTTTATTTAATAACCATCCCAGCAGTTTCAGTCAGCTTTCTGTAATTTTTGTGATGAATGCAAGCGATACTTCCCTGCATATCCTTAGTGTTGAGAAAGCAGGCTGGGGAAATAATGTTTTAGTCAAATATGAAACCGTACATGATTCTAATACCTTGGAGGAGATTTCTTTCTGCTTTCCATTGTTCTGTAAATGAAAAGTAAATTATGCTTTGTT-AAAAAACTTTCCATTGAATAGTTTTATAGCAAATGTTTCATTCACTTCAATAAATAAATGTACAATATTTTTTGAAGATTGAGACTCAAACCTTGCAAAATTTAACAACTCTACCAAATTAGTCTCTCTGGTTCTTATTCTACAATAGAAAATTATACTTTTTAACTTTTAGTTAAGTAGCATTTAAATAAAACGTCGAATTCACTGCTGAGTCTTG-GAGGGATGGGAGATTTGTGATACACAGAGGTAGTTAATATTACAAAGATGAGGGA-CTTTAAAGATTGCTGtctctct
s HiC_scaffold_1 129553074 1147 + 233722169 ATTTTAGTTATGGCAATTGTCTTCTTCATTGTGACACTTCCTCACATGTGCCCTTGAACTCTTATGCTTACCTTGGACAAGGTGACTAGG---ACTGATG---TTTCCTGAAATGTATGGTGGCAAATGTCTAGGGTACCAAGCTCAGTTCACTGGTTCTAGATCTGAATATGCATGGTGGTGGGAATAAGG---------ACatggttttcttctcttctaaTCCCATATTTTTACTTTGCATGTATCAGGGTA-ATATCCATTGTCTTAGCCTCGTGGATTGTAATGTTGTGCACAGGCATAATTGGATAAGGAGACATGGGTGCC-ATCCTCATTGTGGAATTCAATTCACCTGGTACAAAGAGCCCCAGATTCTGCCTACCATCTGCTGTGGA-GAGAAGAGCTCCCCTTGCTACATTTGTCACATGGAAATTGAAGGGTCCCAGAAGGTCCTCAGAGCTTGGATCTGTAACCTGGGTGTGGACTTCACTCTCAAATTCCTTGATGAAGTTTTGATGAGTTCTTTGACTTTTCACATTTGGGAATAGAttgaaatttaatttctgagTAGGAGGACTAGTAAGAAA-AGTCAGTGTTCTGTAAACCACAGaacaaaagacagagacaaaaagacagataataagtgtatgttttatttaataatgttCTCAGtagtttctgtcatttttctgtaattttcatgaTGAATGCAAGTGATACTTTTCTGCATATCCTTACTGTTGAGAAAACAGGCTGGGGAAATAATTTTTTAGTCAAATACAGAGCTGCACATGATTCTAATACCTCGGAGGAGATTTCCTTCTACTTTCCATTGTTCtgtaaatgaaaagtaaattatGCTTTGTTAAAAAAACTTTCCATTGAATAGTTTTATAGCAAATGTTTCATTcacttcaataaataaatgtacaatattttttcaaaatcgAGACTCAGGCTTTGTAAAATTTAACAACTGCACCAAATTAGTCTCCCTGGTTCTTATTCTTCAAtagaaaattatactttttaacTCTTAGTTAAGTAGCATTTAAGTAAAATGTCTAATTCACTTCTGGGCCTTGTGAAGCAT--TAGACCTGTGATGCACAGAGGTAGTTAATGTTAGAAAGCTACAGGATCTTTAACGGTTATGCTTTGTCT

a score=21727
s chr3           143344320 912 + 160039680 AAATGATTCCTTAGTAAGAGGCATTATAGAAGG-CATAATATGGGTTCCTCCTGT-TATGA-TACCCATTGTCAGTGTTATATACGCTTGTGGACAATGTGGAATTCTGGAGGAAGACTGGCTGGTCCACTTCTACTCTATGGTTGCTTACTTCTAGAAATATGACTT-TTTCTATTCCTCGGTA------------------------------ACTGATG-AGTGAGTTATAAAGATTGATCTC------CATAGTT------GTGTAACATTGTC----AGCATCTCTTACCTGGCCCTTCATATGTGTGCAGCACAAATTTCTT--GGCTCTGCTTTATCACAGTGATAACAGGAGGG-ATCAGAGAAGGAAGACACTGCCCAGTTTTCAAGGAGCTAGGGAAATTTT------CTGTTGGCCTCTGACAGAATACATTTGCATCCCAAGTGTTTCTTTGAGTT-------------------GCTCAAGGAGATATTTTTTCTTTTTGGTTAAAGCCAAATCAAAAGAAATCATCAGAAGTTTCTGCATGGAAGTGTGAATCACTTGCAAATTCCTAATCAGAGAAAGAAGCATTTGCTTAAATTTTATCCCTGGGGGCACTCAAAGTTGACTCTGATTTTCCTAAAATCACACAAAGTTCAATAAAACTGAGTTGTTCCCAAACACAACTTGAATGTGGACAAATGTAGCCTGATACATGCATTCAACAGAGAGTTTTGCTAACTACA---GAGTTCTTGCCTAGGTGAGATAGTTCAAAATC---CAAACCAAAAATATGACTCTTCTTTGTAGCATATGAGGCAGATGGTCCAGGAGCACAATGGATT-GACCCTTGGTATC-ATCAGTTGCCATTTATTCCCTTGAAGCTATAAAGGTCTCAGGCTTCAGAGTAGCTCCCCAAATAGAGAATCACCTGAATTG-TTTTACTGATGGAAGTAGGCAGGTAAAGTCACTCCAGTTTCTTCAAT
s HiC_scaffold_1 129555808 962 + 233722169 AAATTATCTCCTAGAAGCAGCCCATAAATAAGGGCATAATGTGAGGTCCTGTAGTATATGCCTACCTAGATTCAGTGAAATGTAAGTATATAGACA-CAAACTATTTCAGAGGAAGAATGGCTAGTTTAC--CTTCTATATAGCTGCCTCACCTTAGACATGTGAGGCACTTATGTTTCTCTGTAGGTATTAGGATTAACTTTATAAACACAGTTATTTATGTAGCTATTTGTAAACACAGCTTTATGTAAACACAGTTATTTatgtgtggtatttttttttagtattttttacatGACATTGCATATGTGTGTAGCCCTTAATTCATTAGGCTGGGTTTTAT---GGAGAGAACGGGAGATTATCTGAGTATGAGCATGAAACTCAGTATgtgagaagtttggaagtttttgttttcttttttggctcaGACAGAATGCATTTGCATCCCAAGTGTTTCTTGGAGTTTCAATGGAAATATCAAGTTGCTTAAGGAGATTTGTTTTCCTT---GTTAAAGCCAAATCAAGAGAAATCATCAGTAGTTTCTGAATGGAAGTGTAAATCACTTGCAAATTTTTAGTCATACGGGGAAGCATTTACTCAGGGTTTGTCCCAGGAGCATCCAAAATTTGACTCAGATTTTTCTCACCTCATTGAAAGTTCAacacatt---gttttttttaaacaaaatttctaaatgaatgaattttgctTTGTACATGAAGGCATTGGGaagtttcataaattaaaaatgatttcttgtcttaaataaatacaaaaaaatctatCACACTAAATA------TCTTCTTTG-AATTTATCAGTAAATAAGTCCAGCAACAGAATACACTGGATATTTGGTAGCTATcagttttcatttattcatttaaaatggtAAAGGTCTCAGG------------------AATA-AGAATCACCTGAAATATTTTTACTGACTTAGATATCAAGGCAATATTACCTTGGTTTCATAAAT

a score=31325
s chr3           143346202 1216 + 160039680 TGCCCCATACCTCCTAT----GAGGCTTCAGCA--TACAACCATTACTCATTCAACAGCTGATTCTAAGATGCTTAGTCTTTTGCCTAGGAAAGTGGGATTTC--CAAATGCACATCTTACTCTTAGGTTTTTCGGTGATAAATATCAGCAAATCTAAAGAGACTCAAGCGTTTCCTG--CAGCATGCTCACCGTGGACAATTCCATTGCTGTGTTAAGCAGCAGTGGAGTCCTCTGG-GAGCTTGTCCACCTCCTTGTGTGTAACATCAGGATAAAAGGGAGGAAGCATCGAGTAGGCATAATGACAACCTCAGGTC-TTCTGAGTGCTTCATACAGTCGTAGTTGTCCCTGCTCCTCAAAACTCCAAGTTAAGTTGATAAAAATAAGCAAAACAAATGAGGACTTGTACACTCAGA-TATTTGTACCACTATTCCTATACATGCATCATTCTATAAATTCTAAG--GTAGATAGGTCTGACCT--TATGTTATTTTCTGTATGATTGACATGATTTTAGTTATGGTTTTTAAAAAAGTATTT-----TGTATATCTACATCTGTGTATGTGAAAGGGAATGAAGCAGAGAAACAAAGAGGGAGAAAAAAAGACAGTGACCTTTCTAAGCTAGCCTGTAAAGTCTTTGGGAGTGGAAA-TGATGT-TCTGGGAACTATTCATTGAGCCTACCAGATGGATCTTGGCTCCAGTCAGAGCATAAATGTGGCTGTAGTTAATTCACAGAGAATTTGTTCCTGAGTTCTTGCTTAATTTC--CAGCATTGAAACTCTAGTTTATCTCGCTCAGACACTTCACATTTCTTCCCTCTGTTTTGCTTTATGCTTGGAATATATGTGCATAATGTGCTATCTTCCTCTTGGTTCTGTTTAGTTTCTTGTGTGAGAGTCATTTTAATAGCATTTCGTTTCAAGCAGAGGTCTGTTATTCAAAGTAAACACACCAAACTTGGCTA---AGAAAAACTATTTGAATAGTATCCATAAAGTAATAAGACCCAGAAAATGCAAATATAAAATACAGTATCCAAGGCTAGTAATGTTATTCACAC--TTTGCTAAATTCTTTTAGAGTGGGATATAGCTAATCATAGAAGAATCACAGTTCAGACTATAAACATATTTT-TCCAAGGATATCAAAAGGGTATTTGCTGAAGATAATTACAATATTTACGTATATACTAACCATTTCTTTATC-------------------ATAGATCAGTCATATAGGCAAGTAGCttt
s HiC_scaffold_1 129560784 1139 + 233722169 TGCCCCATCACTCCTCTTCAGGAGGCCT-GGCAGTCACACTAACCAGTTGTTAAACAGTTGACTCTAAAAC-TTTGATATTGCCTCTGGGCTACTGagattttttcaaataaacatcTTTCTCTTAGGCTACCTGGTGACATACATGATC----CTAAAGAGAATCAAGCATTCTGTATTCAGTGAGCTTGC----------------------TTGTACCCCAGGGA----CTCTGGAGAGCTTGCCAACTGCCTAGAACATTCCATCAGGACAGAG-----------TCCAGTAGGTCAAACAATGGTCTTGCATTACTCTGAGTACTTTGCACAGGCAGAATTTTGACTGTCTCAAAGAAGTACAATTTAATACACTAG------------------------------CTCAGAGTATTTATGCAGCCATGT-TACACATAAATTGCTTTGTGAGCTCTATTTTGGGGATTACACTAAACTGGTATGTTTTCTTCTGAATGACTGCTGtatttttctgtattgctttgtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttga--------------------------------------tttctGGGCT-GCCTGTAAACTCCTTGAGggtaaaaaatcacatctttggTAATCATTTATAGAGCCTAGCAGATGGATTTAGGCTCCAGTAAGTGCACAAATGCAGCCTCATTTaattcatagagaatttgtttctgATTCCTTGCTTTATTCCATCTACCTCTCAACCCCGGTTTATCTCCTTCAGAAGCATTATATTTCTTCCTTATGTTTCATTTCATGCTCAGCGTATATGTGTATAACCAGTCAGCTccatctcagttctttttatttccttatgtggaagccattttaagaatattt-gttTCAAGTGAAGGTGTGTTATTCAAAGTAAACACACAGAATTTGGCTAGAGAAAGAAACTATTTGAATAATATTCACGTAGCAGTAaaactttgaaaatgtaaatataaaataaaa-----------aataatgttattcaCACACTTTACTAAGTGCTGTTTGACTAGGATATAGCTAATCACAGAAGAATCTTAGTCTATACTAGAGACACCTTTCATCTGAGAATCTC-AAAGAACTTTAACTGGAGGTAATTATAATATTT--GTTCATAAGAGCTATTCttttcttaacagcttttaacataaaaatagatGAATCAAATATGCAAGTAACTTT

a score=13850
s chr3           143349529 746 + 160039680 TTTTTTTTTCTCAGCAAAGAACAGTCCATGGTTTATACACAACCAGCTGCTATTTACTAATAGTCAAAGTGCTGAGGTagggctgacatggta----agcaatggaggac---aaatgaaagggacacttcacactgggctgacttggttttgaatttaggctctgcttactaggtctataaccttaggcaaatttcctctttgtcaaattggactattagtaccaattaccttatgagtgtgtttggatgattgcacacactaataaaagtgaagtatttagtcaagaacctggcacgttaaggctcCAGTGGTGCTGAGCATCCTTATAAAGTGACTTGGGCAACGT--------GGTAGAAGGTGATGTAGGAAAAGATGCTTATGGTCT-TACATT-CTATTT---GCCCAGGGATAGAAAGTGAAAAGGAAGTTTAATGGACATTAGATGTGGTTGGGAAAAGGTACAGGCCAAAATGTGGCTTCTAATTCACAGTGCTCTTCCATCCCTGcagaattgctatataaagtctgctcatgccgaagctaacgctactttaggagcaccataaatttagaccatgatgtgaacagcattccc-agagtAACACTGGGTGGCTCTTTTGTACATTTTCTACTTTA-TTAGTCCAAGGGAGGTATACGatatatatgtatatgtatattgaatatatatatatTGAATTGTGACTGTATTTATCTTTTGTCAGAAAGGT-----TTAGAATTCCATTTCACTATCTCTTCAG
s HiC_scaffold_1 129564484 716 + 233722169 TTCCTTATTTACAGTA--GAACAGTACCTGGTTC--------TCCATTAATAGTTGCTAATTGTCAAGTCATTGAC-TATAAAAAATGTGGTAGTATAGCACAGGATGACTTTGAATGAA--------TTCA-----GGCTGAGTTGGTTTTGGGTCCAGGCTTTG-----TAGCTATGTCACCTTAGGCAAATTTCTTCTACATAAAAT-GGGCTAGTAATAATAATCACCATGTGACACTGTTTTGAGGATTGCATAAAATAGTAAGCATGAAGTACTTAGTAAAGTGTCTGCAATAGGCAGGCTCCAACAATGCAAGATATTCTTATTAAG-------GGCACCTTCATCCTAAGATGCAAGGCAAT-TGGGGAAAGACCCTCATAGCCTGTATGTTACTAGGTTGGGTCCAGGGACAGAGTGTGAGCAAGAAGCTTTATGAGTATTGAGTACAGGTGGGATGGGGCATAGGCCTCAATGTGGCCAATAGTTTATAATGTGTTCC---CTGGGCAGAGCTGCTGTATATA-CCTGTACATGCTGTTCAGGGCACACCTGAAGAAGTGTCGCTGACTTATA-TGTGATGCAAAAAGCACCCCCTGGAGTTTCATAGAGGTGCTC-CTAACACATTTCCTGCTTTATTTAGTCCAGACAAGGT-CAAGAAGCTTATGTA-ATGTTGCTTGAA-----ATTTCATGATTCTTG------CTTGCCTTTTATCACAAAGATCTTCCTCAAAATCCCAAGCCACTTTGTCTTTAG

a score=36771
s chr3           143351358 1579 + 160039680 ATCAGTGTTTACTATATAATAGAACATCTGACTC-CTGTCTTCTATTTTGCATGAACAAGTTGACACCAGCACTTCCAGAAGTGGTCCTGACACAAGGAATCTACACAG-AAGAAAAAACAACCATAC-AACTTAGTTGTACAGAAGATGTGTCTTCACGGTGACATTAGTCATGGCCTCATGTG-----CTGACTG---------ACTCTAGGCAATGTGGCTCTGAGAAGTGGCAATTTCATGCCAGATGTCTTAAGGCCACACACAGTGCTTGAAGACATGTTGGACT-TAAGCCTCAACTGGTACAAGTGAGTCTCTACAGGTCAGTTGAGGGC---------------TTAACTCCACCCTTAACTTCCTTTGCCAGTAAAATTTTTAGAGCACTGCTCAT--TGAATGCTCTTGATTTTTGAGTTCTCAAACTTCAATATCTAATACTCTGGTGAAAAGGACCAGAATAAAACCCAATGTACTCAA------------------GGCTCCC-----------GTTAATCTTTGAGTTGTGGGAAGCACAGGACACACAGTGAGTT---ATAGTTTTGGGTGGTACATTCCTGCTCCTGGTATATTTGAAGGAAATTAATGAGTGGATTGACAATACACATGGCTCTTTTTTTTTTTCTTTAAATTCTGATAGTATTATCTGTCTCCTTTCCAAGACATTGTCTGCCAATAAGCATCCATAGAAG-----------TTCTTCCATTCCTA-------------CCTTCACTAAGA-AACCCTGAGTGCAGGCTGCC------AATGGTTGTCTTGGGTTGTTCAGC-----TCCAACTGAAGTGGCTGTATCT--------TCTCTAGGTGACTTCTACATATCATGTCT--CCTGATCCTCCCACTCTTGACTCTTGG-GAGAACTTTGCCACCCAAAGGGACTTCTCCTTAAA-GTTACTGCTCTATATTTATCTCAAGATCTTTTTCAGGAGAGGTTAATCACACTACTTAAGGCAAATTCACAATAGTTAAAATAGGCCATTAGGAATTCAGTCAGGTGTGGCTCCTGTAAATTGACTTCCAAAGTTGCAAGGGAAAAG-ACAAATGTGTAGTTCCAGCTCAGGATCTGTCTAAAAATCATGGCACGCATCACAAGAAATTGCGCTCTGCTGAAAGCTGTCAGCTTGCAAAAAGAATCAATTTATATTT-AAAATTTTGCT-AAAATGTAGATAGTAG---GAGAAAGCCTAAATACCTGTCTTCAGTGGAAGAAGACAGCATTGTTAGATTAGTGTCTTGTTGGACTGGATGTTTCTTGGGTGCAATAGATAGACATCCACTGACTTGAGGACCCTCTCTT----TCTTACAA----------TCTCATACACAGACAATGTCTAGTAAGTTGGTTTTGAGTGAATTTGACTATTTTCGTTTAG------GTATTTATATTCAATGTGTTTAGAGAAAAATTGCGAAAGCaacaaaaatcaaaaacaaaaataaaaacTCTCCACAGGCCTTTTA---AATAATAT--------TGGGGAATAATGGTAAACTGAGGCTCAAGAGAA------TCTCCTTGGCTTTGCTTCCACCTGCTGTGGGCTTTTGATGGTAACCCTTCCACAGTCTTCATCAGTCTT---------------AGGCTATAGTGACATTCCTATCAGCTCTAGAATTCGACATTTGGCTGTTTGTTTTGCCTATTTTT
s HiC_scaffold_1 129565500 1694 + 233722169 ATAAATGTGCACCATGTGATTGAAGGTCTGGCTCTCAGCCTCCTACTGGGTACGAGTAAGATGAGACTGGCTCTTCCCGAGGTTGTTCTAACATGAGAAATCCAGGTGGCAGGGAAAAACAGCTGCACTGAGTTAGCTGTACAGAAGATAAAGCACCATTGCGACATCAGTCCTGGCCTAATTTGTGACACTGACTGTGCTCCTCCACATCAGACAATCTGGTCCTGAGCACTTGCAGTTTCACGCCAGATGTTTTTAGGCCACATGTGGAGTCAGAGAGTA-GTTGGACTATAAGTCCCAAATGGCACAAATATGCCTTGACATAGCATTTCAAGGTCAGGAGTAAGAATATTCAGCTCCTTTCTCAACTTC-TCAGCATGTTTGACTTTTACACCACTGCTCATATTTTAAGCTCTTGATTTTCACCTTCTTAGACTTCTATATCTCTTGTATTGC-------GACCAGCATAAATATTATTGCCCTTAATTCCTTTTCTTATTCTCTGACTTCCCAATTCCTTTGGATATTCTCTAGTTTCTAGTGTGCCTAGGACACAAAATGTATATAAGTGGTGCGGGGCAACAAACTCCTGCTTGTCATGCATTTTAAGTAAGTTaataatagaattaa-aatatacata------ttgccTATTCTTTGACTTCTGATGCTTTTTTCTGACTTGT----AGTACAGTTTCTATctataaatgagaagaaaaaatacgGGTGGAGTCGTTCATTCTCAGTGGATTCTCTTTATTTCACATAGACAGCCCTT--TGCAGGTTTTCCTTTGCAGGGAGTGTAC-GCTTTATTCAGAAGGTATTCAGATAGTGGGGTCTAATCTGCAGGGTTTCCGTAGGTGACCTCT---CATCCTCTCTGAACCTATCTTCTCCTCCTGCAAACTTGGAGAGAACTTCAACATCAAAAGTGGCTTCTCTTTAAGTGTAACTGCTCTATATTTAGAAATAGATCTTTTCCAGGAGAGGTTAATCACACTACTTAAGGcaaattcacaatagttaaaaTAGCCTATTAGGAATTCATTCAGGTGTGTCTCCTGTAAATTGACTTCCACATTtgcaagaaaaaaggaggaatgcTTCATTCTAGCACAGGATCTGTCCAAAAATAATGTTACATATTAGGAAGAATTATAGTCTACTGAAAGCTGTCAAATTGCAGAAAGAATCAATTGCAGTTTAAAAAACTTGCTAAAAATGTAGATAGTAACTTCAGATA----ATATATTTTGCTCAATTGGAACAGTATAATATGATTCGAT-----TCCTGTTAGATTGTATGTTCCTTGAGGCCGAAAGACATATCTTATTCAATTCTCAAGTCCCCTTGTAGTATCTTACAAATTATACCTGTATCTTGCACA---------TAGAAATTTGATTTGGAGTGAAATAGA-TATTTGTATTTAGCTCTATGTTTTTATATTCAAAGGATATACAAAG-------------AGtaaaatttataaggaaaaacCATAGCTCTTTCAAGATGATTGATGGTGTTATATTTGGACTCTGAGAATTAACAGGAAACTTATGCACAAGAGAATTGGGTTCTCACTCACTTTGCCATTAACTAGTCCTGGGACTTGGTTTCTAACCTTCATCAACcttaatttattttaactttaaactGAGGAGGCTGAAACTAACTGCCTAATAGGTCTAAAATTGATCCTTTGACTATTTATTTTACTCATATTt

a score=27102
s chr3           143353619 544 + 160039680 ATTTTATTCTTATCCTAACTCTAATTTTTGTTTGGGTTGTAGTTTACCTCAAATTATCATTTGCTTCCAGGCTTCAGACACTAAACTTTGGATCAACAGTTGACTCTCTTTCTGCCTTCCTCAGCCCAGGAAGGATTCTTGG--TTCATGAG----ATCCTGTCTGAATCTGTGGCTCTCA-GAGTTTTACAAACTTTCTTGGGAGAACTTGTAAAAATAGGTCAGAGTAAAGACACAAATGGCTGTCCTTGTCATACCCAGTTGAAGTTTATGGTATTCTAATTACAGTGGACCTGAACCTTTGGTGAGCTGGAGTAATTAAACTATTCGGTGGGAGCAAATCATTACAGATCGGAGATGAATTTGCCCTTCCAGGATGCCGATCAGAACACTGAACGGGGGAATTTGCTTAATAGCGCCTGGAAAAGTGAAGGGCACCGTACTTGTAGAGAGTACTTTGTTCACATAAAACCAAGCTGACTGCCATTTGTTTCACGGGGATTGTTTTGTAATCACTTCAGTTTTACT-AATAATCCTGACTCTCCTGTTT
s HiC_scaffold_1 129567179 545 + 233722169 ATTTTACTCATATTttaagcttaatttttccttgtCTCATAGTTTAATT-AAATGGAAGTGTGCTTCCTAGCTttagatattaaattttatatcaaCAACCAATTTAAACTCCAATTTTCCCAGCCCAGCAAAACTTCTCTGATTTCATTAAGTAAATCTAGTCTGTCTATCTGGCTCTTAAGagttttgaaaactttcttttGAGAAGTTGTAAAAATAGGTCAGAGTTAAGACCCAAATGACTGTCCTTGTTATACCCAGTTGAAGTTTATGGTATTCTAATTACAGTGGGCTTGAACCTTTGGTGAGCCGGAGTAATTAAAC--TTCGGTGGGAGCAAATCATTACTGAT---AGATGAATTTGCCCTTCTGGGATGCTTATTAGAACAGTCAAAGAAGAAACTTACTTTATAGTGCCTGGAAAAGAGAAGGgaattttatttctagaaagtGACTTGTTCACACAGAATCAAGTTAGCAG-TGTTTATTGTACTGCAACCATTTTGTGATCACTTAAGTTTTACTGAataatcctgattttttttttt

a score=15497
s chr3           143366840 1589 + 160039680 TTCGGAGTCTTAGGCCCAAGTGTAGGCAGTACTCAT-CTGAGATGTTTGAGTACATTTT-------AGGAAACCCTTAAAACTGTTTTTATTTTTTTCCAGAAATGTGAACTTTTTCATTATTCATAATATTACTTAAGCCTTATTATATAACCAGAGAAGCCTGGGCTTTTCTATTTACTTAGTAAAGATGGATATTTAGATAAAAAACACTTTGGGTGGCTTGGAGATAGTGTACAATGGTTGTGATTATCTCCTGGGGGGTTATTGTCTTCTTTGCTAATTTCCACAAAGCCCAGAATTTTATATAAGGTTCTACATTCATCTAATGAGGCTGTGGCCTGCACAGCTGTTTCtctttctttctcttttctcttcttttcttttcttttcttttcttttcttttctttctttctttctttctttctttctttctttttttctttctttctttctttcttttttATTTTTGTTGTTGTTGGTTACTCTTGCCCAGGGCCAGTACACTGCCTAGAA-ATGTAGCTCATGTCAGGGTATATACCATTCACTTATT--TGCTCTCTTGACCACTTCTACCTGCTGTCACTCTTGATGCAAAGAGCTTTAAAACACTATCAAGGACCCACTTTCAGTGTATGTAACTGATGTGCAGAAATTTCAGATCTCAG-AGTTCTTACTAGGTCCCTTTTCTAAACTGTTGTCCTTAGACTCGGGATGGAAAGGGGAAATTATGCTTCCGTTCCTCT-TTCGGTCCAAAGAGAATGTTTACAGACATGAA-AGCTAATGCCTTCTACC-------GAAAT----------------AAGTTTTCGGTTGAGTCACAGCTGGTTGAGTATTCAATAGCTTTAGTCAGTATATGTAAATGTCACATATGTCACATAAATAAAGCTTCAAGCATGATGCAGCACACCTCTCCTCAGTATTGACTATATAGAGCAATGGGGCAGACTATA--AACCTGAATTTTA-AGGCACAAAATCTATACATTTGGAATCCTCAGTAACAACAAAAAGAGTTAATTGCCCTATAGCCAGACTGTAAAGGTGTTTCTTCCAAACCTGAAGAGAAAACAATGCTGAACTCCTCTGTCTTTCAGTGAATTGGTCAAATGTGTTACATTCAGCAGGGAATCAAT---------GACTGG----TTTTGGGATTG-GTTCTTATGGGTGAAGATAT----------------------------------------------------------------------------------TTTTCTTTCTAAAGAGAGTCTATTCATTCAAGTGGGACAAAATGGCTATTTCTGTGAAGCAACTGTCTGATGGAACCTGGGTTTTGACCCCTGATGTGTTATAATTTCAGTATTCTATCAATGCTTTGAGGGGTGAGGCTCTCCAGCTGTCACACACAACACTGCACACCGTTGGGTTTGTTTTAGCACTGCACATGGCTCCAGGCTTTATGTGATCCAATCCCAC-TGAT-----CCTCTGCCTCAAATCTAGCAGCCATGGTGGAACTTTTGGGGAGCCCTTAGTCTGTGGGAGACTGCTCACTCCTATGTTTGTCTCTAGTATTGTGTGTACTGTACCTTTCTATCAATTCATGCTTTTTAATTCAG--GCACTTCCTGGCCATTAT-----CATTATGAATATCAGGAAAACAGACACAAAACCTTTAGGTTTTATGTGGT
s HiC_scaffold_1 129574054 1496 + 233722169 TTCAGAGGGTTAAATCCAA-TATAAACAAAATTCAGGCTGAGAGTTCTACATATACTTTTTATGTTAGGaag--------attatttta--tgttttatagaaaTGTGGTCTTTCT-GTTACTCAGAATAATATTTAAACCTTATTACATG-------------GGCTTTTTCTACTT--TGAGTAAAGAT------TTAGATAAGAAACACTGTAGGTGGCTTCAAGATAATATGCCACGCATGCAATTGTCTCCTGGGG---TGTTGTCTTCTCTGCTATTTTCCACAAAGTCCAAAGTTTTATAAAAGATAATGGACACATTCAGCACAGCATTGGCTAGAAGACA----------------------------------------------------------------------------------------------------------------------------TATTATTGGTTACCTTTGTCCACAGCTGATATATTGCCTAAAGCAAAGAATCAATGTCTCATAGCATAATATCTACTTATTTATGTTACCTTGACCACTT-TGCCTGCTGACATTTTTAATACAGAGATCTTT---------TTCAATGTACACTTTCCATACATTTCACAAACTCAGAGAAACTTCAacattaagtattttttaataga-CCCTTCTCTATATCATTGTTCTTAGACCC-------AAATAGAACTGcattttccccctcttttcttTGCTTAAAAGAG--------CACACATTAATAATGAATAATTTCTGCCCacccaagaaataataaaaaataaacagaagcatCCCGTTGTATTATATTATGCTGTGTGTTTA-----CATGATGatcatttctgaattttctaCAC---------ATGAAACTCTAGAAATGATCTATCagaaatttta-aagcattatttaGATA---TAATCCTGTATGCAATACTAGTCTGAATTTCATAAGCAGACAAACTAC-CTTTCAACATTCTCAGAAAACACCAAAAGATTTAGTAATCTCACAGCTGGATCATGAATATGTGGTCTCCCAAATGGAAGATTAGAAGAGACTTACTGCTCCTG-----CAGGACAGTGACCAAAGTTGTTACATTCAAC-GGGGCTCAATACCACCTTAGATTggatgtctctgtgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagaggtggtaGGTGAGGTTTActtcctgaa-aaagaaaatgtatttaaatggagCAAAACAGATATTTCTGTCATTAAGCCAAGTGAAGACATCTGGGATTTGGCCACTGGTATATTACAATTCCACGGTGCTGGAATT--CTTGAGGGTTGACACTGTCACACTGTCACATACTGCATTGCAAATCTGCAGGTGC-TTCAACCATTGTTCTTAGATCCATTTTTCATGTGGTTCATATCCACATGGTTCATATCCCTACCTGCGTCATAACCACCGTAACGGGCCTGC--AATACTTCTCAGCCCAGGTAAGAA-----------------GCCTCGAGTCCCCAGTACACTGTATCTTTCTATTGA--------TATTATTTCAGGAGCATTTCCCCCTACTTACTACTGCACTTTGAACATCAAGAGGGATGAGATTGAAACACTGaactttatttaat

a score=8038
s chr3           143369393 315 + 160039680 CAGTAGATTTTTCTCTGTGTCTTGCAGGACGGGGGTTGGTGGGGAGTTGAGAAGGTCATTCGGCATAGGCTACCGT------ATGGTATGGCTCTACCTT--TCTAGAGCCTCATTCTCCTCTATATTCACTTTGGGTATGTGAAATGAGGAAGAATGTGGTAGCCTAAAGTTGCTCATGTGACATCAACAATATTTTGTCAGCCAGACCTCACTGCAATGACTCAACCTTCATCATAAGGAAAGCTTGGGAGTGCTGTACAGTTTGGTTCCCAAAGAGAAGAAAATGGAGGCCTGTTACCTCCAACCTGTAACTGTTAAGTT
s HiC_scaffold_1 129575919 285 + 233722169 cagcagatttttttttgtatcctt-------------------------ATGAAGTCATTCA----AGACTACAACTGTTCCATCATGTGGCTCTATTTTCTTCTAGAGCTTCATTATATTCTATATTCAGTCAGTGTATGGAGAATGAGGGAGAGAGTAGAAGTCTGAAGTTGCACACATATCTTCACTAATATTTTCATGGCCAGAACTCAGTCCAATGA------GTTCAGTATAATGTA---TTGGAAATGTTGGTTAATTATGttccagaagaaaggaaaatgaagcttGATTGACTAAAGCTTGCACCTGCCATGCT

a score=50634
s chr3           143369873 1752 + 160039680 ATGACTAGAAAATGGCAAGAATATTTGATTGACAAATACACTTTTTA-------TTTAAGAAGGAACCTTGTACATTAATGACAGAAATAA-ACATGTTTCTGAAAAA---TTAAAATCCGGGAAGAGAGATTGTTGCTGTTGTTTTTGTTGTTCTGATGAGATTGCCTGTTTGTGCCTACAATTTAGGGCAGAAGACTTGTTTATCAAACTTGAGTCTGACTGAATTTAG-ACAGTGGGTATTTGTAGGTCTCCTACAATCGGAATCCCTTGAAGGAGAGAGGATCACTTCTGTTTTATTGTGTG---TCTTTCTTGTAGGAAGCATTTCTTC---ATCACTAATCTTTCAACTACTAACTTATCTGGGATGTGTTCCTTTAAATGAAACAAAC--AAGTAGGCACAATTAACTCACAATAACTAGAGGCAATTCAAATGGTTTTCCTGTTTTATTGTAGGAAAATCTGCCGTAG-----------AAATGACCAATTTAGCACTTGCTTTTGAAATATGCTTAAATGTGAGTTTCAAGAAATAAAAAGACTATACCTTGACTTTTGT-------AAATAAGGAAATTGAATTTTCCTTCAGAAGACTCT-ATATCTTCTGTCCCCAAAAAAGGAAGAGTTGTTTTGTAAATAAGGTGTGTGCCCCACTTTTACAGGTTTTCTCTGATTGCCTGGGTCTGAGTAGCCAACTGAAAGGGTTCATTCAAATCAGAAATATGAGACACTCTTTATAGTGTGA-------TATTTTAAAACTTGCATATCTGGCTGAGAATTTTATAAGCAGAGATTTAAGAGGGCAGACTTGAAGACTGACTGGTCTCCAAGAGTCTCTCCTAACCTTGAAATATTAGTATATCAAAAGCCAGGATTTCATTACCCCCTCTATCCATAAAGAAAATTAAAATCATATGTGGTGCAGTAAGCTCAAACCATTCAAAATGCCCATAAACATATTTAAAGCCCAAAATACAACTTTTGCACAACTCTGAGTACCTTGCACAACTCTAGACAAGA-------GGCACTCACACATGGTAGTTGTAATTACTTTATTTTATGCATTTTATGATTTGACAAGAGCATTGTTTGGTGGCTG--TGGCAACTTAGTGGCAAAGATTCCTG--TGTACCACA---------CACAAGGAAAACA----------------CTATGAATTCTTGTCCTTGATTGGAAGGAGATAGCAGGTTGTCTGTCTCAAGTGCATGGCCAAGGGCGATAGAT---GGCACAT----------GTAGTCCCTGCACATCTCTTTTCTGTATTTTAGCTGAATTTCTATGGGTGAAATTTAATTAATTGCATATACTTAAAATAttttatttaatatacatgtctcatttgcctatatgtgtatcatgtttaacaactgttgaaagagtgtctgttgaaaagggtgtcagatcctctgaaactggagttaaaagtggttttgtgtcaccatgtaggtgctgggtaccgaacccaagtcctctgcaaaagcaggagtgctcttaactgctgagccatctcttcgtcccTTGCCCACACATAATTTTGGTGAAAAGCCTAACTTCTTGCACTGGTTATTCTAGGCCTTGGGGAGAAAGCCCTTTCCTATCACTGT---TTGAAATAGAGATATGTCAACAGTTAAACACCAACCTTAATTAACTTCCACTAGAACATAACATATGTTATACAAAGATGTAGGAAGTGTGAAATCCTTTGGAAAAAAATGGGAATTTCTCAGAATCTGACTGAGTGGGAGGAAAGTTATTAATTATTTTACTGA-CATTATTATTTCATTTCTTT
s HiC_scaffold_1 129576395 1583 + 233722169 ATGACCAGAAGCTGA-AAGAATATTTGATTGatagatgtattttttaaatataatttgagaAGCAATATTGTACTTTGATAACAGAAATAAGACATATTCCTGAAAAACAATTACAATGcagaaaaa----------ctatattttaaggAGTA--GATAAAATTACCCACCCCAGTCCGTAACTTAGAAGGTAAGA----TTTaccaagttttcttttctctaattttagTAAAATGGGTATTTATACATTTCTCACGATAGCAATCATTTGAGGGAAGGAacatcatttctatttcattaaatgaaactttttttattGGATCCATTTCTTCTCCCTCACTAATCTTTCAAGTACTAACAGATCTGGGATGTAttcttttaagtgaaacaaaccaaAGTACGCACAATTAACTTCCAAAAATTAGAGGCAATTCaaagttttttcctttctaattgtAGGCAAATCTGCTTTAGCAATTCCTATGAAATGACCAATTTAGCACTTGCTTG-GAAGTGGGTTTAAATATAactttcaatata-aaaatgactCTTCCTTGAGTTTTGTCTATGATAAATAAG-AAACTGAATTTTCCTTTAGAAGATTCTTATTTCTTCTCTCCCAATGAAAGGAAccattattttgtaaataaaatatatactttaattttgcagGTTTGCTCTGATATCCTAGTTCCAAGTAGTCCACTGAAGAGATTCATCCAAATCTGAGATATGGGACATATTATGCAATAtgaattatgatttttttaaactcgCATCTACTACCCAGAACTTTATAAGTAAAGATTTAGGAGGGCAAGTTTGAAGACTGACT----TCCTCGAGT-TCTCCTACTCCTGAAAGATTATTGCATCAAAAGTCAGTATTTCATTGCCCTCTGTatccataaagaaaattaaaatcatacgCTGCACAGCAAGCATACACCATTCAGAATGATCATAAACATATTGAAAGCCAAAATTACAGCTGTTCCATGACTT--GGTACCACGTGGAGCACTAGATGTGCTTGCATTGCTGCATACACAGTGTAACAGTAATTACTGTACTTTAAGCACCACATTATTGCATAAGAGCATTCTTTGGTGGCGAGACAACAATCTGGTAACAAAGAGTCCCTCTTGTACCACGAAACCCCTTCACTTGGAAAACAGAGTACCCTGAATGATCTACAGGAATTGGTCTTAGTTAGGGAAGAGACAACTGATTATGT----CAAATATATAACCAAAGAAAATGCTTCTTGGAACATCCACAGTGTTGTAATGCATAGGCATCT---TTCTGTACTTCTGATGCAGTT-TAAATTTGGGATTTAATTGATTGC---------------------------------------------------------------------------------------------GTATCAG------------------------------------------------------------------------------------------------------------------------------------TTTAGCTAAAGGTCTAACTGGTTCTACCAATAGTTCCCAGCTTTGATGAGCA--CCTTCTCCTGTCACTGTGCTCTGAAATAGGGATGAATCAACAGTCAAACATGAACTTTAATTAACTTTC-CTAGAACAGAACATATGTTATACAAAGATGTAGGAAGTGTGAAATCCTTCG---CTAAATGGAAATTTCCCTGAATCCGACACAGTGGGAGCAAATTTATTACT--TTAtgctcattattattattttatattttt

a score=329916
s chr3           143373458 9327 + 160039680 [encoded data, 10033 characters]
s HiC_scaffold_1 129578989 9348 + 233722169 [encoded data, 10033 characters]

a score=37090
s chr3           143383769 1739 + 160039680 TCAGCTAGAAAGTTACTGAGTGTACTGATTGTGAGTTTTTCTAGTTCCAAGCCTTACTTCTTTACTTTGAATGCTTAGATTGTGAGGGGATCATCCCTCTGAAGTATATAACTATGGGAAATAGGGAGC---------TAGTGAAAAATGCTGCAAACTAAATTTAAAAGCTTTCAATGGTATAATGATGAAAATCCATCATATGCTACCAATATCCCCACCTTAAGATACAATCCATACCAACTAATGGGTGGACCTTGTTTCTCATGGTTTTTGTCTGCTTTCCTTCTGTGAGGCCAGGATAATAATGAGAAAGGTTGGTATGTTTTCTTG-TACTTTCTTTACTTACAGATATGTACTATAATC--CAACACTTTCTATGGAACGCTATAGAATTGCTTTGGAAGATGGAGAGGAGTAGCCTGGGGGAAAGATGGAAACTCAA------GACTTCTCCTGTGGGAATGCATTG----GCACTCTGAAGCTTGCCCCAGAGATTTCTAGGACTTTCTCAGGGTGGTTTGGAAGATGTGAATGATTTTGCCTCCACATTTGCAAAGAACATGTTCTTGAACTACAAGCCTTCAAAACAGAACTTAAACCACTCACCCTTTCTTGTAACTATGTGCAGAGGTGACCTTACTCTCTCTTCTGCAC-TGTGATTGTCAGAG-GGCTAATTTTCTTTGATTCTCTGTTTTCCTGGCATTTGGAAAACATCCCTCATGAAGTTTCTGAAATCATCATCTTTGCTTGGTGCCTGATGGCAGCTGCTTGCCTGGTGGCTTCTGGTGGCGCTGTGAAATGTGTGGGCAGAGGACCAGAAGGACTGAGGAGGAAATAGCATAGCTGGAATAGCAATTGCCTGCATGATGCCTGCAGCTGTTGCTGGAGCATCTTCTTAAGATATACTGACTGATATTTTAAAACCACAGGTGAATTT---TGCCTTGAAATTTAAAGGAATGGGGCAGGGACATTTCATGAAACTCTTTCACAGAGTGGCTGCTGGTGATTTCT---TTCTAAACTTG-GTTCTTGTAAGTTCTTTGCAGGTAGAGGTGAGATGAGCTAGGGCTAC---------------------------------TTTCCTGATCATATGGGATGGATCCTATAGGACGTCGAGAAAAA-CATTTGAAAAAAGGAAA---------------TGTTTGTTCACTAGTGGGCTGAACGAGGGGTACACTGACTTTTACTTATGTCTGTGAAAGTCA-CACACTTCCTTGGTTTAGTCTGGGGTGGAGTGTGAAGCTTCATACATTCATAGATGCAAAACCACTTTTAGAATAGAAAGGAAAGAGTTTTCTGTGGCCA---GGCTTTCCCCCAATTTGGGAGAGTCTGAAATGACAACCATGAGGGCTTATTTAATGAAACAGAATATGAATGTTAAAGAGAACCACATCCCCCAAa--gtggtccaaaattttcaagtc-----aaacatcatcccatgttcttttttttgagcatttatccccaaatatgtatgtgtgtc--cttatacattatatatgtattattgcatgcatatgctgataaataacaaaatatgtgtaagtagttcaactgtc-aagaacaaactaagataaaatattttaaataataaggtaaggttttccttcctctcacacaaattattattatggtcaggatttgctctcattt-gaattgttttaaccatcttgctttaatactttgtgatacaacatctggttctacattcttattttaaattttagtttaaat---tggagttataaaaagaacactttatcaaagtatag
s HiC_scaffold_1 129588460 1674 + 233722169 TCAGCTGGTAAGTTACaaag----ctgactgtggact----------caagTTTTTCT------CTTGGAGTGACTGGGTAATGAAGAGAGCA---CACTGCAGGCTAGCGTTATAGGGAATTGATGGCATAAAAgtctagaaaaatatttctccaCATAAGTTT-------TCCAAAGGTATAAAGACTTGTGACGGCCCTATACCTCCTAT-TTCCAAACTTAAGATGTAA----------------AGTAGA-------------GGTTTTACACTGCCTCCCT-CTGTGAACTAACTATAATGGTGAAAATGGTTGGTGcacttttttaattctttctctacCAGTAG-------TTTTAATTGTTAACGTATTTTGTG---------AGAATTTCTGTGAAAGAAGGAG--------TCTAGAGGGAAAGTGGAAATCATACAGTTTGTCTCCTATTGGGAGGATGTTGTGCTGTGCAGTATGAAGCC-ATTTTACAGATTTTTGGTGCTTTCCCAAGACAATATGAAAGGTCTCAGGTATTTT-------------TAGGGAACATGTTTCTGTACCATGAATGCACAAACCAGGTCTTGAAACACTTGCCCTTTCCCGTAATAGGGAGCATAATCTAATTTGTTCTCTTGTCTGCACGTGTAATTGTCAGAATGGCTGGTTTTCTTTGATTCTGCGTTTTCC-GGCATTTGGAAAATGTCCCCCAAGAAGTT---AAAATCATCATCCTCGCTGGGGCTCTG-TGGCAGCTGCCTGCCTGGTGGCTTGTGGTAGTTCCGTGAAACGCGTGGGCAGAAGAACAGAAGGGCTGAGGAAGGAATAGAGGGACTGGAATAGCATTTGCCGGCAGAACGTTTGCATCTGAAGGTGGAGCATATTCAGAGGACACTgtgaggaatattttaaaatcgCAGGTGCACTTCTGCGCCCTGCAATTTAAAGGCACATGGTGAACAAAATTTGTATGACT-GTTCACAAAGCGGCTACTGGT--TTGCTGGCCTCTAAGATGGAGTTCTTGT-GGCTCTCAGCA-GCAGATGAGAGATGAACTGTGGccatttcttccaggaatgaaaacatttaagGCAACTGTTTCCCTAGCACTTGACAGGGAGTCTGCAGAAACTCAAGAAGggttttttggaaaaaataaatgaacagaaataCCCTGTGTTTCCACTGGAGGCCACACTGGTGTGTGCA---AATGTCACATGTGCCTGTGAGTGCCACCACACTTACCTGGTCTGTGCTGAGGTTGCTCGGCACG---CGTGCATTC-----TGC---ACTGCCTTCAGAGGTGAACGGAAGGCACATCCTGTGCCCATGTTGCTTCTCACTCACTTTGCAAAACCTGCCATGCTACCTGAGGAATGTTATTTAA--------------------AGGGGGA---ACATTCCAAAAACGATGGTTCCAAGTTCTACAGTTGTATAAAACATCA----ATATAC---TTTTTGACTACTTATCCCAAACTatgtatatttattgatttataaattatatatgtactATTCCATGAATATGTTAATACATAATAGaacatatgcaaatattttgaCTGGAGGAGAGAACGCTGAAATGAAATATCGTTAGTAATGGCACAAAGCCATTCG--CtttcacaaaaattatttttatgattgtgATTACttgtaattcaaaaatatttt---tgtcttggtTTAGTACCTCGTGATGTGACTTCtggctttaaat-----tttaaaatttttgttttaatgccTGTTGCAGCAAAAAGAATGCTTTATCAATGTACAG

a score=148846
s chr3           143385907 7782 + 160039680 [encoded data, 8343 characters]
s HiC_scaffold_1 129590137 7076 + 233722169 [encoded data, 8343 characters]

a score=34933
s chr3           143396702 2213 + 160039680 AAGGAATAAATAGAAGTAGAAGCTAGGTACCTGTAGAGTTAG---TCTAAGAGAATAATGCAAAGAAAACAAAGCAAAATAAAGTATGAAATGAATCTGTGGCAAGTATGGGTGAGAATGG-TGAAAGGTCAGTATCTGATGCGA---TCTGAAGCTATCGAGTACCTCAGTGAGCAGATATGAGTGAAGTATTTA--TTTCTGTTTTCAT------------------TTAAAAAAAAAGACTTTGAAGACTGTTATGGAGAGTCTGTCATGAGTCTAGACTCTCTGGAGACTTTGAACAA--------ATCCTACAGTGCTCTTGGG-------TCAAAATGA--------CTGAACACACAGGAATGTTTCATCCCCAAACCATCTTTCCTAAAGTTAAAAATTATCACCTTGCCTCAGAAGGACACATGCCACATGATGCTCTTGATTTTTCTTCTAGCAAGGTATCAGATTTC----CCTTCCACTAGAAAATTATTCTGATCTATT---------------CCCTTGCCC----CTTGACCAAATT---CTTTATAAACCTTCAGACCAACTGTCTAAAACACATTGGTAGTCATGTTAGAGAAAGGCATCAATCAGCAGAG------------------------------------TTAGACAGG------TAACAAAGTCATTTTTTTAAATCCTGAATGATAGGTATTAGTCACAG--------------CTAACATGTTTTGTTTGTAATTCGCCGAACGCCTT----------------------CCTATCTCCTGCATTTACCATTGCTCCCTCATTCCTCCTT-------------CAGTC------ACAAGTCTC----AGTTATATGCTTGTGAGCGCCCTAGATTCTCCACTCTTCCAtggtaggaacattggcatcttagtttgacatacagggatgtgaatccaacagaaccccttgctctgaaatctggagaaactttgggctgag--ctctcgagtcttagttttctcctaagtataatgagaattaaaatG--------GTTTCATTGTGAATTTGTGACTAGTCTTTGAAATTATTCTAGCACAGACT------CTCCAAATGACAGTAATTAATTTTTATGTCAGTCCTCGGCACTGCAGTCTTTACAGTT-----------------------------ACAGCCTTATCCTCTTGCACAGACTGCCCTGCTCCGACCCAGTGTGAATGTTCCAGTCTTGTTTTGCTTTGTACCTTATTCACATTGAGCCTATCAAACTTTTGCTGCCTCCAAAGAGGACTTATTTCCATCTAATTCTCTGGGTCTCCTCTCCCCTTCTGTACTCGTTTATTTCCTCTCTTAAGTGATACCCACCTGCCTTACAGATGCCCATTT-CCTAGGATCCACTTAGAAC--ATTCCATCGTGAAGATCTTCCTCCCCCTCCATGGCAGACCATATTCTCATTACCTGCCAATATTTCAGGGG-AGTC--CCCAAGGCAGA-AGCACCTGTGTGATCTTTCTTGACTGTAGTTTCTTTATGCCTATATT--------TGTGGAA---AGAGACCATTTGTCCTATCCCTGCAGCTATAACGATGCTTGGAAGTCAATACCTAAATCTAACTTCCCTCAAA---TTCTTGAGTGTTTAATATGTGCAGATGCTTAAAACAACTTATTTGAAATTTAATTTtatatatatgtgtgtgtgtatgtatatgtatatatacatatatacatagatgcatatacatatatacatatacatatatatatgtatatatacatatatacatatacatatatatatatatatatGGAGAAAATGTGTTAGAACGAGCATTATAAGTTTTGAAATTTATGGTATACTATTTTTTTCTTTTTACTGCAGTCTAGCAATGGAGTCAGAGCAGTGATCTGAAAATCTAAGGTACTCCGTTCCTTAGAAAAACATACAGGAATGGCTTACGGAATTTTGGGTCTGTTTAATTCATCTTAACCTCTGA---TCTCAGGGTATGATGACTTTTGTGTTCGGCTACTGTTCTCAGCTTACTTTTCTTACAGCTTCTCAAAGAATACCACTCTGGTGAACTTTTATGACCCATGCCCTTTATTACATCTCTCCAAATTCTTTTTTTCTTCTGCTTTTGAAATGACTCTCCCCTTGCTTCTGAGATGGTCAGTTTCTTCCATTTCCTGTGGTTAGATAGCATTTTTTTGTGTGTGCGTTTTTTTTTTAATATAAAGAGACATTAGCTCTCAAAGAAGAGTTGGACATGTGTGTATGCAATATAGGAACTGAAGTCTTGTCTATGTACATGTAAC---------------TATTGTGGGTGTGCCTGCTCTCCCTGCATGCATTGTCCTCTCC--ATTGTTTCTCTGAGTTTTATTTTCTTAGTAAATCCCCTAGCAGTATGGCACT
s HiC_scaffold_1 129599173 2252 + 233722169 AGGGAATAACCTGAGATAGAA-------AGCTACAGGGTTAGATATTATGTAtaagaatgaagaggaaaaaaagcaaaataaagcttGAAATAAATCTATGG------TGAGTgagaaaagatggaagaaaagtATCATGTTAGAGATTTTATAACTACTGACTACCTCACTGAACAAATATGAGGAAAGTCCCCaaattgttttcttcataatatcTTTTGCCAGGACTCCAAAAAAAATGCC------AGTGTTCTGAAA----------GAGCCTGAATTCTTTGGATACTTTCAGTAATAGGTAAGGTCCTGTAGCAGGGTTGAGAAGAGCTTAAAACTGAGACATGATTTGGGGTTGAAAAAGTGCTTCCTTCCACTCGTCTCTATCCCATAATGAGAAGctgtcatcctgcctcagcagtGCTC-TGTACCACAGTGCCCTTGCCTTTCCTCCTA--AACTCACtagatttcttttccttcttctgcaAGCATGTGTTGACCCCTTAACTGGTCCTGCTGCCTCTTGCCTTTTTCTTGACCAGACTGATCATCATAAAATTTGAGATTAATTGCCTAAAATTGATTAG----------AGAGGAGAGTTTCA-CCAGCAGAGATGATGAACTTGCTGCCTGTATCAGAAAATGATTGTTCAGTCAGAGCCCAATGAGAgagtttttcctttaa---tttggtcccagggattgaactcatgacctcacgcttgcccagcaggcacttatgctgttgagctgaatccctggttttttcctttattttcaatgCCTAATTCATGTATTTACCACTGTCCCCGC--TCCTCCTTGCTCTCTGCTGTACAGTCTGCTGCCCTGGTTTCCATGAACTATATTCCTGGGAACGCGTTTGAGTTTACACTCCTAGATGTTAATATCATGGACACTGAAGTTAGAC----------TTGAAACCA------------GCTCTGTGATTTTCggaaatttggggggggggctcctTGTGTCTTAGTTTACTCCTAAGTATAATGGGAATAATAATGTAGTACCTATTTAGCTATGAAGTTGTGCttattattcaaaattatattaGCACAGAGTAAGCGTTTAGAAAGAAtagtaattaatttttatgtCATCCTTCCACACTGAAGCTCTTACAATTTCCCAAAttgtaaaagaaaagtaaagaaagcaaATTAGTCCAAGTGTCTGGACCCTCATACTCGCCTTTGCCGTGTCTGCTTTTGTCTTGTCT--CTGTGTATTGTGTGCACGTTGTACCCACCAAACTCT--CAACCTTCAAACAGGTCACATTCATTCCTGTTTTGATGGTCCTGCTTTTGCCTCCCCATCCCATTTCTATGGCCTCTTAA------CAAATCTGCCTGTCATAGACCTACCTACCTA----TCTTTCAAAACCTATTCCTCCATGAAGACGTTCTTCCTCCCCC-TGATGGAAATCATCTCCACTTCTTGCCAAGACCTCATGGATAGTCTTCTCAAGGCAGATCACACCTGCCTGGACTCTTGagaatttagatttttgtttCCCACATTGTCAGCTCTATGAAGCATGAACAGCATCTGTTTCATCCTTGCAACCACTGTGGCGTCTGGCAGTCTAAATCTATCTCTTTCATTCCCCAAAGAGTTCCCGAGTGCCTAATCCATGTGGGGGCTCCAACCA-TTTATTCAAGTCTCAGCAAAATATAT---------------------------------------------------------------------------TGAATGAGGGAATAAATAGATGAGCAAATATGT---------TGGTGATTAGGTGGTAAGACAG-------------TGAAATTTGTGGCATACT------TTCTCTACACTACATTTTAATGATGGAGTCAGATCCATCATCTAAAAATCTGAGGTACTTAATTTCTTAAGAAAGCACACAAGGGATTCTC-CGGAACTTTAGGTTCTTTTAATCCATTTTGGCCTCCGAGCATCTCAGTGTATAATGATTTTTACTTCCAGCTGCTGTTCTTAGCTTACTTTTCTTGCAAGTTCTCAGAGAATAGAATTCTTATGTGTTCTTATGACCCTTGTCCTTTAATACTTTTGTTCACCTCCTCCTTTTCT----------AACTGGCTCTTAGGCTGGATCTGTGCTGGTCAGTTTCTTCCATTCCCTGCTGTTAGAtggcaatttttgttttgtggagTCTTT----------AATACACTATAACTCTGTAAGGA---TTATGCA--TCTGTATGCAGTACAG----TAAAATATAGTC-----ACACGTAATACACCTCTTTGACGgttttgtatatgtatgtgttttaaaCATATATACTACTCTTCCCTTACTTGTCctttaaatttcaatttcctAAGAGGTACTCTACCAGTGTAAGAct

a score=98255
s chr3           143399779 4717 + 160039680 [encoded data, 5018 characters]
s HiC_scaffold_1 129601879 4195 + 233722169 [encoded data, 5018 characters]

a score=193871
s chr3           143406868 7111 + 160039680 [encoded data, 7770 characters]
s HiC_scaffold_1 129607226 7414 + 233722169 [encoded data, 7770 characters]

a score=114690
s chr3           143417000 4134 + 160039680 [encoded data, 4365 characters]
s HiC_scaffold_1 129618795 3919 + 233722169 [encoded data, 4365 characters]

a score=61916
s chr3           143422553 1706 + 160039680 AAGGCTCTGAAGCCGCAGATTTTAATGTTTTATACTTGGTTATTATCAGCTCTGGTCAACTGACTTCCCTCTGTCAACTCCAGGCATGA------------CAGAAAA-------------GAATGTTTGAAAAGTG----------TATATGTGCTTATGTGGGAAAACATAAGCCATTAATAACCAAATAAGGAGGGA-----TTTTTAAAAAATTACCCTGAAAAATCACTCCTTCTGCCTTAGGATATTCTGTGGAATGAATTCCTCTAGATCTTCTGTCTGACTCGCATGGTGAATTCGCATAGAAAAGTG---ACACGGGTTTAGAAGGAGC-------GTTTGAAGAATCCTCTCCGCGTAGCAGGGGTCCTCACAGGAAACAGCAC-CAAAGACCCCTGGGCTTTGTCTCCAATGCACTTAGACCACTTACAAATGCATCACGTTGCGCCTCTGCATCCCTCGTGAAGCACACGTAAAAGGCAGCTTTCTCCTTTATCCTCTAATACTGCAGGAAACTGGATATTTCCAAGTCAGTAAGACTCCCTGGGATGTGATATGTGTGCGCTAAAAGTGAATGTTTTCTTGCTGGGATGTTCTTAATTTGGTTCACAGACAGATTAGAAAGCTCTTGTGTGTGTGTCAGTGGATGTGGACACAAAAGCAGTCTTTTTTATTTTATTTTTTCAGGCCTCTAAAGTACTTTGGTTTTCTTGAAAAGAAACAAATCCTGCAAGCATGTATGTTCTATTATTTGAAGATATGATTTTGCAGGTTTCAAAGTATATCTGTTTCTCCCCCCCCCCCCAGACTATGGAAGAAGG--CTTAAGGGATGTACTGTCAGCTCAGATTGAGAGGAATTCAGTGAA-ATCAGGCACAGTTTTAATGT--CTTTCTTCCTACTAGAGACCTGATGTTGGAGGGCACTGACTAGTGACAAACAGTGctttcttattttactttctttcttcctttctttttctttttttctttAAATGTGAACTAGAGCATTTCTGCTAAAAGCTTAAAGAAGCTTCCAGGTAAGATGTCTCAGTGAGAGGCTCT-CCTTGAAAGAATACAACTTAGTACATG--CAGAGGCTCTGTTTGGACCCC-TACCTATCTGGAAATACAAAATGACCATTGTCTGCCTGCTACCTCCC-CTCATGCCTTGTGCACACACAAGCTGCCCCTCTATGGGGATGGCTGGAGGGTATTTCATTAGAACCTCTTTGTGGCATGGTGAACCTGATTGTAATGAATAGGCTGAACTCTGAAAGCACTAGGCACTGACCTCCCGTCTGCTGATATCCTAAATCAGGCCATTAGAGGATTCCACAAGAAAGAGCATGCTGTTTATAGGTTAATTTATCTCTCATTTGGTTCAACTAGATGTGTGCTTATACAGGCCCTTTAATCGAATCTTACAGATGCCACAAAGAGCTTTCCTTTTTAAGGGAGCCTTTGG----AAATGCAGTCAGTTATCAGTTATCTAGAAAAATGCACACTGTCCGGAATAGCTGAGTATGGCACAGAAGTGGTCTCCTCTCCTCTTTGCATGATTACTTTGAAATTTCTCTATCTATCCAGTATTCATCCTGAACTGTGGCAGTGGCTGATCTTTGTTATTTCTTTGTTTATCTGGGCTAAGGGTCCACCCAACCAAAGTGCTGCAAACAAACAAAGAGGACTGATGACTCCTGATGTCCACGGGGTCTCTATAAAACATCAAAGAGTAGAGATATCGGCTGCAttag
s HiC_scaffold_1 129624534 1612 + 233722169 AAAGTGCCAAAActtcatttttcaatgttttaaacTTGGATATTATTATCGCTGATCCGCTGAGCTACCTATGTAAACTGCAAGCATAATGAAAGGGTGCCCAGAAATATGTACTGATTTTGATTGACTGAGAAGTGCACAAAAGAATATGTATGCTTATATGGAGGAA-ATTAACTATTAATAgc-aaatcaggaaaaaaacaatttttaaa---ccaCAATGTAAAACTATCCATTGTGCACTAGCACTTAGTACAAAATGGAGCAAGTAGGACAGTCTATCTGA--------AGGGATTCATTTACTGAAGTACTAAGACAAGCTCAGAAGGAGCCTGCTTATTTCTAAGAG----CTCTGCTTAGCAGGGGTCCTCTCAGGAAGCCTCATATCAAGAT--------------TCCAATGCCTT-------CTTACATGGCCATCACCTTGTGCTG--GAATCATCAGCAGAGCACATGTGAAAGGC------CTTCTTCATGCACTAGCACCACAGAAAACTGGGCATTTCTAAGCTAGCAAGATGCCCTGTGATGTCATACATGTATGTTGCAAGCAGATGTTTTTTTGCTGCAGTGGTCTTAATTTGGTTTACAAT----TTCTAAAGCT-TTGTGT---TGTCAGGGGACATGACCACAAAAGCAGG-----------TATCTTTT-AGGCCTCTAAAGTACTttagtt---------aaaataaaaacctGCAGGCACATATTTCATATTGTTTGGAGCTATAATTTGGCAGGATTCAAGGTATGTAAGTTTCTTTTCCCCC----AGACTCAGGAAGAAAGGCCTTGCAGAAAGCTCTCCCAGCT-GGAATGGGAGGAGTGCAGGGGAGATCAGGCACCTTTTTAATGTGTCTCTTTTCCCATTAAAGCTCTGATGTTAGAGGACATCGACTAGTGACAAACAGTGCAAT------------------------------------TTTCTTTGTATGTGAACTAGAGCATTTCAGCTAAAAGCTTAAAGGAGCTTCCAGGTAAGATATCTCTGCAAGAGTTTCTTCCCTGAAAGAATACAACTTAATAAATGTGCAGTGGCTCCTTTTGGACCCCCTACCTGGACAGAAATTCAGAAT---CACAGTCTGTCTGCTGCCTTAAACTCAGGCGTTGTGCCCACACGAGCTGTCCCCCTCTGAGGCTTGCTGGAGTGTATTTCATTAGAACCTCTTCATGGCATGGTGAACCTCACTGTAATGAATGGGCTGAACTCTGAAAGCACTGGGCACTGACCTCCCATCTGCTGATATCCTAAATCAGGCCATTAGAGGATTCCACAAGAAAGAGCATGCTGTTTATAGGTTAATTTATCTCTCATTTGGTTCAACTAGATGTGTGCTTATAAAGGTCCTCTAATTGAATCTTATAGATGCCACAGAGATCTTTCCATTTTAAGGGAGCTTTTGGAAATAAATACAGTCAGGACTCCGT-----------ATGGacacaggccagcctgggtgagtGTAACACAGAGTTAGTCCTCTGTCTTCTTTGTGTGATTACTTTTAAA--CCTCCATC--------------CCCAAACTGCTACAATGGCTCTTCCTTGTCACTTTACCATTTGTTTTGGCTGCTGACCTGCCT-GTCACCATGTT----ATGAACAAGGAAATCCAGTGCCTC----TGTGCATGACTTCAGT----AACACAAAGGAGCGTAGACACTGATGGCTTCAG

a score=101997
s chr3           143424632 4154 + 160039680 [encoded data, 4750 characters]
s HiC_scaffold_1 129626173 4510 + 233722169 [encoded data, 4750 characters]

a score=93786
s chr3           143433871 2330 + 160039680 TTTTCTACCTTTAGTAATTCTTGAAACTAACTT---------CTCTGGGAGCTATATAGACTCTGGAGTAAGGGTATTTCTTCCTTT----TGCAATTTCCTTAGCAGAGAAAATACTTAGAGAAAA-----TACTTAGACCTTCAGAGGCCTCCTTGATGTTTCTGTCTGGTTTGCCAACACAGTAAGCTCCTGCATTGCCTGAGAACAGGGAAAATTTTGCTTCTTGTGGGGTTTTGCTATTCCATGTTTGTCTTCCCTC--ATTCCTTCC-AGCACCCTGTCCTTCACTTCAGAGTACTGGAAAAGCTCGGCTTGCAAATCTGCTTTTGGCAGAATAAGATATCTTCCTCTCT-AGGTCACGTCTCAGGCTTTTGTTCAGTCACAAGTTCTGTGTGGATTTATCCTCGGTGCGTCTACTTGAATATTCAAAAAGTCATCAGCTAGTCTAATTTGTTTTTTTTTTAGCCATGTAAAAGACTGATTTGCTTTGACAGGTGGATCAGAAACAGAATTGGAGCTATTTTATCTGGACCTAATTAAACAACCTTCATTACCGGCAGATATATGTTTGTGACTTAAAATTAGCATGATTGGAATTAAAACTCAAAATATAAGGCATTGAATTCAGATATGGCTGGTTTAAAAATAAATTCCATACATTTTAAATGCAGCAAGTCTGGATTTTAAATATTCTATAGTGACAAATTCCATTTAAAGGTAGgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtTTACACGCA-AATCCAGCTACGGCCATAGATAGTAGCAGAGAGAGAGATCCTCACATTTTGAACTTTTCAAGAGCAGCTTTCTGAATTATAAAACATTAATAAAATATTTGTAAAATCAAATTTCTCCTCCGTTTACCCTTAAGCACTGAATTCATCTTTGAGAACTCTGTAAAG--CTTTCTTTGGCTTCAAAGGTTACACTCTCTAATCAAATTATTTCTCTTCATTATTGCCCAGTCACTGAGGCTTTGTCATTGCTTCTTAT--CACATGCATTGTGACTGTATATAGA-ATAGATGGATAGAGATGGAGGGAAATCTGTTTAAAACATCCTCTGA--TACAACCTTAGAAACCACATGATTTCTTTA----ATGGCATTTTACTCCTTAACCTTTTGAGAAATA-TTTGAAAGACTTTCAATATAT-TTTTACATAAATACTTCCACACACACACAAATTGCTTTATTTA-AGGCA------------CAATCTGGGTACTAATTGAAAGTTAGTAATTATAAAATGTTTATAAAAGATACACACACA--CACAAAATTTTAGAC-TTACAAAGATTGTCATGGACTGATATTTCTGAGCCAGA-TTTTACCTTATGAGGGAAACTAAAAGGTTGAATAAAACATATTGACATTTCTGTTCAACATTAAGGCAGTAGGAATTAGGGTGGATTCCTTTC-CTAACAAACATTAATATGAGATTCCTGGTGTGATGAGAACTGGATATCAAGAATCTAATCCCTGCCCCCGCC-TTGTGTTTCAAAATCTCTCTCCAAATTATTAAAATTCCAGGTCTTTTCTGCTACTTTTTGATGCATCTCTAATTTTTTAACTACTTT-GAATGCAAGCAAGAGCCTGTTCTTTGTGTTTATAGCCTCTCTCTAAACCAATCACATTTTATAAAATATGAAATAAAGCATTTGTGTTTCTCCACAT-TCATTTAACAATGAGAATTTCCAGATGGTC----CTTGAGTTGTATTTTCCGAGAATTGAAACAACAGTTCCCGCTGGAGATT-TCCCCCTCTCTTGTGTTTGCTCAGCCCCTCCTGACCCTGATGATGATGGGTCTTGTATAGCCACTGCGCCTCCCCCTCATCTCTGCCCACTAGTTCATTTCTGATTTCAAAGTGGCACCCA-TGAAATCTAGCTTAGCG------TAGGCTTTCTTTTATGCACTACTCAGA---GTTAATTTCGGCACGCACATTGC-CACTTCTTTGGATCCTCCTTGAATCCCAGCCTCAACACAACACAGCTCTCTGTGGCTAGAATATGACTTGGGAG---GGAGAGTGATATGAGCTAGATAGCCGAAGGTTGACATTTAAACTCGTGATTTT-TATTTTCCCCATTCCACAACTGTGATGCCTCACACAGGGTGTCTCCCACTCTTCCC---------------------GTTTACCTTTTTCTCGTAATGCAGCTTT----ATAATGGATGCATCTTTGTGTGGGCCCTTTGCTGCTGTCTCTTTGATCCCTGAATCTTGAAATAACTTCTAGAGAACTGCTTATGTA-AGGGAGAAGTTGGGTTGAA-CTTCCT--ACCACTTTGTTGGCCTCATTTGAGAATGTAGCTTCAAGAGCTTCTGCTCACAGAA
s HiC_scaffold_1 129632176 2350 + 233722169 TTTTCTATCTTATATGATCTGCAGAAGTAATATACACGGTAACTGTGGAAAGTTTATACACTATG-AGTTAGAATGTTTTGTCTCTTACTTTGGTATTTCCTTGACagagaaaattgtaaaatgaccctttctatttctattttca---------tcattGTTTGTGATTATTTTGCCT-TACACCGAGCTGTTACATTGCCCTAAGCAGTGGcagattttatttcttgtagCGCTGTACTCTTCTGTGTTGGTTATTCTTCTTATTACTTCTTAGCACTCCGTCCTTGACTTCATACTACTGGGGGACCT-GGCCTGCAATTCTGCTTTTGGCAGAATAAGATATCTTTATCTCTGAGGTCACGTTTCAAGCTTTTGTTCAGTCACAAGTTCTGTTTGGATTTATCCTCGGTGTGTCTACTTGAATATTCAAAAAGTCATCAGCTagtctaatttgttttttttttagccatGTAAAAGACTGATTTGCTTTGACAGGTGGATCAGAAACAGAATTGGAGCTATTTTATCTGGACCTAATTAAACAACCTTCATTACCGGCAGATATATGTTTGTGACTTAAAATTAGCATGATTGgaattaaaactcaaaatataaggCATTGAATTCAGATATGgctggtttaaaaataaattccatacATTTTAAATGCAGCTAGTCTGGATTTTAAATATCCTATAGTGACAAATTCCACTTagagttgtgtgtgtgtatctgtgtgtgtgcatgtgtgtgtgtgtgtatttctgtgtgtgtatttgtgtgtgcacTGTGGCTCTGGATGTAGATAATAGCAAAGATATGG---CCCATATT------TTCTGAACAGTAGCATTCTGCATTATgaaactttaataaaatatttttaaaacctcattTCT-CTCCCCCTAGTCCCAAGTATTGAGTTTAGCtttgaggattttttaaaaacctttctttgGCTGCAAAGGTTACA-GCTCTAATCAAATTATTTCTATTCATCATTGTCCAATTGCTGAAATTTTGTGACTGCCTTTTATTATATATGTATCTTCATTGTGTGCATATCTATATATCTAGACACCGAGG--AATCTGCTTAAAGCATTCTTTGATGTGTAGCACTTAAAATAACATTAGATTTTTacactatttcatttt----cttaaccttttcagaaatattttaaaagattttatatgtatattttatataaata--ttcacaCACATGTAAAATACTATATGTAGAGGTAGCTATAGTCAGGCATTCTGGGTCCTGATATAGAGTTAgcaattattaaataattataaaatacacatatatatttttgtctttttagactTTTTGAGGGTTGTTATGTACTGAGATATATGAGCCAGATTTTTaccttatgaagaaaaataaaaggttgaaTAAAACATATTGACATTTCTGTTCAACATTAAGGCTGCAGGAATTATGGTGGATTCCTTTTACTAACAAACATTAATATGAGATTCCTGGTGTGATGAGAACTGGATATCAAGAATCTAATCCCTCTCCCTGCCTTTGTGCATCAGAAACCCTCTCCAAATTATTAAAATTCCAGGTCTTTTGTGATACCTCTTGATGCATTGTTGTAATTTTAACCACTTTAAAATGCAAGTAGTAGCATGTTCTTAGTATTTATAGTCTTCTTGTAAACcaacatttttttataaaatatgagaTAAAGCATTGGTGTTTATTGATGTCTTTTTTAAACATTAGAATTTCCATGTGGTCTCTTCTTGCTCATATTTTTCCAGGAACCAAAACCCCAGTTCTTACATGTGTTTGTCCCCTTTGTTTGGATTTACTTAGCCCTCTCTG-----GATACCAATA---CTt------cggctcctcctcctcctcatctttgcTGAACAATTTCCCT-TGATACAAGAGAGACACTGACTTGACTTTAACTTAGTGAGAGGCAATGCTTTCTTTTGTGCTGTAAGTGGAGTTGTTAATTTTGCTCTACCCATTGTGCCCCTTTTTGAGTCCTTCTTGAATTTCACATCTGACATACCTTAATTCTAGGCAACTGAAATTTAACTTGGGAGCCTGGGGA----------TCAGCTGGCCAAACTTTGA-ATCTGAATGCTTGATTTTATCCTCTACCGAATACA-------------------AGGATATCTACCATGCTCCcccaacctctttttttttttttttttttttttttttttgttctgctgCAGTGGCGATGGTGACAATATCTTTTTCCAGGCTTATTGATGTTGTCTGGC--AACTTTCAGTTCTGGGGGAACCTGTGGAGAACAGGCTACATCTAGTGAGAGGTGGCATAAAAGCTTTCTAAATGATTACCCTGAACCCAGT----AATGTA----TAAAAGGCTCTGTTTATAGAA

a score=30723
s chr3           143443018 2285 + 160039680 TTATT-TTGTTGTTTTATTTTACCAATGTATTTAAGAATAACATAGTTTGCTATCACTGTCCTTTAAACACAATTTAAG--TTGTATTTTTACTTCCTTTAATCCATATTATAGCttgtcactcttggcaactcagtgccatttcctgtca--cat------ctcgacagcaggaacttagagaatgagaactgaatttcttatcatttctgccagcagctttctagtttggaatctactaatga-agacatttgtgcaaaggttgaaa-----accagaatcaggagatggttttgctgtgggacaatgctaggaaggtgtctggc---tggcaaaggagagaagcaagattcttctaga---------------ttct------tcttggtaacacttagatacggaagatggctgaaa---ccagaggcagtatctttcaatttttctattttctgattcccttaacactttgaggcttccttgttctt-------------------------------------------------------------------------------------------------------------tctccaccagtttccTCACAGATCT--AATCTTACA-------TATTGAATTCACTC-CAGGGTAAAGTGTCCAGAGAAGCTTCAGTTTTTCCAACTGAGATCTGAACAGTAGATGCTGTTATTAGTCAATCTGTATTTATAAACCTGAATTCAGTGCGTTTAATGAGCCAGTAACTACTCTCCCTGAATAATAGCTAACTAG-ATGCATGATTTTCTTGGTTTATATTTTTAAATTCTGATGTTAATCATGACCTCTGTGTCGCTATTATAATGCTGATAAGTTAAAAACTTCAGATTTTATAAATTATAATGCAACTTTTACAAGTTATTTTTATGTATTCTAATTAGCTTTTAATATCTTTTACAGTCtttatttttattttgtgtgtctgagtgttctgcctgcatgtataactgtataccacgtgcatgcagctcacagaagccagaagaggatgacagatccccttggaactggagctagagactgttgccatatcggtgctaggaatcaaatctacctcctctggcaaggcactcagtgctcttgactactaagccatctctctagctcATGTGTTGAAATTTTAATGATGCCCAGGTTCATGGA----------------------------TTGGAAACTTGGTCCCCAACTCCTTTTTCTTTGCAAAAGCCATCTCCCGAATGGCCAGCAGAATTCTAAAAGGGCATGCTCTTGAAGGGAATGACTGGCCACTGCTTTCTTCCATGTTCCAGGTGCCATTTGGGAAGCTACCTCCAAtacctcatcacaagctcccagataaattagccaaagga-ctgagactatcgaagaaatactc-aaaaatgagaaccaaaataaatcattcctccttttaaagtaatgagcacaggtgttttgatacagtcatgcaaatctgaGTAGGACAGAAGAGCATCAAGCATCCCTCCCAAACATACA--ACCACATATTGTCTCTTCTT----AGTCTTACCCCCTTAGAATCTTCATGCCATGGGTCTTCTATAATTAATGTCTCTTGGACTGGGATCATGTGAC-CTGTCTGTATAAGTTTCTATTTCTTATTCTTTTAAACTCGTAAGTATTCTTGAAGCTTCAACTCAAATGTCTTTTTTCTTCCT---TTTTCCCTTTATTCTTATTCCCAAGAGCTCCAACTAAACTTAA---AACTGCTTT--AAGTTGGATTTAAAACTGTATTATTTTCTAGGTATTTGCTTTGTTCCACACTGTCACTAGAAAGAAAATGCTTTGAAAAAGGCAAAGAACTCAATAGATAGTCATGGACTTGAAAGATTGTCCTGAAATAGGCTTTCTC-TGTGTACCATTTACAAAAGAAGGAAAAGGAAAAAGAAAAAAGAAACTCAGAGAAGACGAAGAGCTATTTTTTTCTTTAAGCAAAAATAAAATAAAAAAATCTTCAAATTGATCTAATGCATTATTAAGTAGCCTAGGGAAA-TTTCGACTTTACTCTTGTTTTGTAGAAGGAGAAAAACTACTCAAGAAATGTTCTTGTTTTTTGAAAACTGATGTTTTGAATATGTACTATTTTCAAGCTACAAAAATGTAACTCATGCTAAATCCTTTAGGAATAGGTACACTTATAAATATAACATTAATACACAAATATACAACATAATGTAACTGTGCCAGGCACCATAAGGAAGGACTGACAGCGAGAATGAATGTAAGGCTTGCAGAGAAGGCCTCTCCTGGAAGCCAGTAGAGTGGA-TGAAAGAGAACAAGACCACCTAGAAGC-CAAGTGGGAAACTGCATTTCATTAAGCAGAACTGTCATGGAGAATCACAATGTAGACACA------------------AACAACCACACCCAAACCCAA--GCAGCCATTGATGAACTAGG
s HiC_scaffold_1 129639313 2163 + 233722169 TTATTGTTGCTATTTGATCTTATCAATGCATTTTAAAGCTGCATA-TTTAAGacca------tttaaataatatttaagaatTGAATTTTC-------TTGTACAATGTGCCAGGTTGTCCTTCTCGGCAACTCAAT-CCATTTGCCATCATTCATGCACTACTGTATTACAGGGGCTTGAGGAATAAGCGCT-----CCTTAAAATATCTGCAGAAATGATTCTGTTTTAGGTTCTACTCGTGAGAAACAATTGCTCATGGGCTGAAAGGCAAAACAGAATCAGAAGGT--TATTGTTTCTGGATACAATTAGGTAGATATCTGGACTGTAGCAGGTGACAGAAACAAGACTTTTCTAGAGGACTCTGGGTGTTATTCTACAATTTTTTAGAAAAAGTTGGGTCCTGGAGATGACTGAGAGACTCAGAAAAAATGACCTTAAATATTCTTGTCTCCTGATTTCCTGAACAATA-Gtggcttctcttctcttctcttctctctctctctctcttctctctctctcttctcttctcttctctctcttctcttctcttctctctctctctctctctctctctctctctctctctctctctctgtctctacc---ttTCCAACAGATTATAAATCTCACACTCcttgtgtcaaattctttttctgtaggAAATATTTAGAATGAGTTCTGTTTCTC-AATTGAGTTGTAAC------------TTATCTGTAGTAGTATAATTGTGAAActgaattaaatttgttttgtgAACCA-----------------ATAATATTTAACTAGTATGCAAGATTTTATTAGATTGT-TTTCAATACTCTACTCTTCTTCATGACCTATGTACCCCAACCT------------------AATCTCAGCTCCCATAA---------CA--CTCTACTAG--------ATAGACACaagctaaaattaaaaacctcATAC--------TTCTTAACTTG----------------------------AACTGTATG----------GCTTCTCTAGTTAGGCTGGCGA-------ATATTCCTCAAAGACTAGCTCTAAGGTTTGATCCC-----------------------TACCTCCT--------------AGTGCTTTTGAG----------------------AGGTGGTGGGATCTTTAGGATGTGGAGCTTAGTGGGAGGAAGTCAGGTTATTGTTGGTGTGTCCTGGGAATATTGGAACTCAgccacttcttttttat----------ttcctaactGCCA--------TAAAGTGAGCAAGTTCT--------GTTTCTATCTACTGCT------------------GCCATT-----------ACACATTATTTTGCCATAAACTCAAAAGCTATGAAGCCAATGAATCTCAGATTA-------AATCCTCCAAGAGTGTGAAAtgaaacaaacctcttttccttttaaatttattgtctCAAGAATTTTGTGATAGAAACacaaagctgactaatgcag-----TCTCCAAAACTGCTGTTGATCATAAATTATCTCATAATCTCTGTCTTTGTGAAGCCCTATTCCCT----ATTATC-TATCTCTAGCCTTCAGTAATGAATGCTTTGGAGTTTGTGATTGTGTAATTCTACCTGCTAAAATTTCTACCTCTTGTTCTAttaaatttgtacatattcttgAAAGTCCAATTCAGATACATTTTCTCCTTCTCATTTTTCCCCTCATT-------------ACACAAACCAAGCTCAATAGCAATGTTTTTGAAAgtctaattaaaattatataatttt----atattt--tttgttttcaattttcattcaaaaataaat-ttttgaggaATAGAAAGAACTCAATAAATA-TCATGGACTTGACATACTGAATTGAAATAGACTGTCACATATATATCATTTATGTAA------------------AAAAATAGCc---------atcaaaagatttttatttctt----------------aaaaagatC---AAATTGACCTAATACTTTATAAAGTAGCCTAGGGAAAATTTTGACTTTACTCTTGTcttgcaaaaagacaaaaaataccaAAGGAATTTTCTTATGTTTCAAAAACTGATgttttgaatatgtatttttttcaagatataaaaatgtagCTACTGCTAAAGCCTTTGGGCATATGTACAGTTATAAAGATAACATTAAAACTCAAGTATGCATCATAATTTCATTGTACCATACAATGCAGAGAAGAAGCAACAGTTGGTACTGCTTTGTGACTTACAGTAGAGGCCTCTCATGGATGACCAAGGTGTGAAGTCAGAGATAATAAAACAACAGGACAGCACAAGTGAG---TTTTACCTTATTAAATA-------CATTGAAGGCAGCAATATGGATGTATTTGAAACTGTCTGGCTTAACAACTACACACAAATCGAATTATAACCAGTGATAGCCTAAG

a score=70176
s chr3           143447225 1698 + 160039680 GTCATAGATTTTCCTCTTCATGCTTAATAAGTCACTCTAGTCAAGCTCATA----------------TCCCCCCTCAAAACCAGGAATGGTGGCCTCAGAACTTTGATAGCAGGCTTCATATGGCTCCTTCTAAAAAAGGAACAATTTATTGGAAGATATAAGGGGCCAAGTCCCCTATATGTCAACACTTGAGAATGAGCGTGGGAACTCGAGGAGGAAGCAGGGAGACCGAGTCCCTAGGTCGTCTAGTAACTGCCCCTTTGAGCTCTTT-GTTTCAGCAACAGTCTCAGACTAAAGACAGGTGATGAATTTGGGTTCATAGTGAAGTTAGTTGAGAAGGAAATGAAGACAG--GTTTAACAGGAAAGATTAGTGGACTTTCTACCTCTGGGCACTAAACGTCTGCTTTGGTCCTCACTAATCAGTTTTCCACGTGCCTCTTGCCATTTGCTTTA-TTAGGATGAGTTCCTAGAGCTC---------------AAATGGCTGCTCTGTGCTGGCCGG------------------CTTTTCTCTCTCT-CACTGCCCTCCATTTAACCCACTTCTTTTTTCCTAAGTGCCTGTGCATAGAGGGCTGGTCA----AGGGGGAAATTATGTTGATTAGGAAGCATGGTCCAATTAAGTCAGACATGATGGGGAAATTGCTTTAGAGTCCAAATATATACCTGCAGGATAGAG-GGCCTCTGTAACACCTGCATAAAGAGTGTACAAATTTCAGAGCGTATAGCTGAGGGCAAAGAAAATGGAAGGCTGATAAATTTGCATGTAAAAG-TGATTAGGGACAGCTAAACAATAATACGTATCTTGGAGGGAAGGGGAAATGGTGTAG---------ATTTTTCTCTAGACCTGTGATATTTGGAAAACATCTG--CTTTTTAAAATAATAGAATTAGAGATACAAGGCAGGTTAGGGTATCAGCAATCTTCAGTTCTTGCCTTTCGTGTTTATTTCCTCATTTACTTTGGCCC----ACACCCACTCAAATCTTCACA----TGCAGTCCCACTCATAGCAATTTCTGATCAGAGTTTCCATCTGAGGAACAAAACTTGAGCAGTGTTGTAAGTCTGAATCGACTTGAACTGTAGGAGCTGGGACAGCAGAGGGCCAGAGGACATCACAGAGAGACCACTTACTGAGAAGTAGCTTTTGAAATGCTCTGTCTACCTCCTCTGACTGCTTTGGTAAGGTTTTCAGAGTGGTTGACAGATTATGTAATCTACCCACCCAGTCATAATGCTTTTTTCTTTGGTGTAGAGAAATTGTTAGGGCATTTCTATTTCAGCTAGTCTCTAGTTAATAATCAATAGTCTTGTTGTCTAATGAAGTGATGGCCTTGACACC--GGCCTTTGTGCAGTGTTAAAATAACATTGATCGTTATCATTATCATATGCCCTTGATATACTGAATAAGGACATGGATATCAATCTTCTAGCAGAATAACATTTCATAAATCTTAGAGAAATAACTGGGATTGTCCAAACCAGCATATACTTCTTGACAGCAAAGTGACAGAGGAGCCCAAGACACAGATCATTTATAATTTATCTCTAAGCCTAGACTGAAGAAAAAGTCAAAAGTTGCATTTAGTATAAAAAG------TGTTTGTCACAAAACTCATAGGAGCACCCCATTTTC-------------AATGATTTTTGAAGAAACT------------TTTGGGATAGAAGGAGGAAGAGATGATTTTTTTTTCCTTTTAGCCATTCCCT----TTCTTTTTT---TTTCCTTACTCCCTAAA
s HiC_scaffold_1 129641604 1781 + 233722169 GTTATAGATTATCATCTATGTGCTCAATAATTCACGGAAGT---GTTAATAATTCACAGAATTGTTTTCCTTCCTCAAAACCATCGATAATGGCTTCACAG--TTAAAAGAAGTTTTG---------CTTCTGAAAA--GCAAAACTTCAGCGAACAT-TAAAGGGGCATGGCCCAGACATTTCAACAATTCAGAATGATCTTTAGAAA-CAGGGAGGAATGGGGGAAACTAATTCCCACAGGATTCCATTTACTGTTCCCTAGACTTCTTTCATTTCACTAGCAGTTGGAGACTTCAGGCAG-TGATGAATTTGG-TCCATGGTGAGGTTAGttgagaaggaaatgaaaacagaggTTTAACAGGAA-GATTAGTGGGCTTTCTACCTCTGGGCAATCAACGTCTGCTTTGGTCCTCACTAATAAGTTTTCCACATGCCTTGTGGCGTTTGCTTTACTTAGGATGAGTTCTTAGAGCTCCATTAGGAAGTGTACAAATCACTGTTTTGAGtagtttaggtttttttttagggtttttttttttctttcttcaatgtCCTCCTTTTAACCTACCTAATTTTTTCTAAGTGCATGCACATAGAAGACTGGTGGTGGTGGGGGCGAATGATGTTGATTAGGAAACATGGTCCAATTAAAGCAGACATGATGGGGAAATTGCTTCAGAGTCCAAATATACAACTCCAGGATACAGAGGCCTCTTTAACACCTGCATAAAGAGCGTATA-----CATAGCTTATCACTCAAGGTGAAAAGAATGGGTATCTGATAAATTTGCACGCAAAAAATTATTGGAGCCAGCTAAATAATAATGTATATATTGGTAGGAAGGGAGAATAgtgtaggtttattttatttttttttagtgctttGAAAGGtagaaaatatatagaattttttaaagagcagaattaaaaatagagaaaag--tagCACATATATAGTCGTTCGTTGTCTTTCTTCACGCTTGtgacctctttctttctctcctctctactCCCACCTGCATCTTAATAGTTTTGTCGTCTCTTTCCCTTCAGTGTCTAATGAACATTTGTATCATAAGGTCAAC-CTTGAGCAGTGTTGTAAGTCTAAAATGATTTCCACTttgagagagaggagaagagaggatcAGGGGATGTAAAGGAGAAACTGTTCATTCCGAAATGTGGTTTGAAATGCTCCTCATACACTCTCTGTCTAGTTTTGAGAGAGTTTCATAGTGGTTGACAGATTATGTAATCTGCTCACTCACCAATAATATTTT-------GGCATGGGGAGATTGTACAGGTATTTTGATTTTAGCCAGACTCTAGTTAATAATCAATAGTCCTGTTGTCTAATGAAGTGATGGCCTTGACACCCTGGCCTCTGTGCAGTGTTAAAATAACATTGATCGCTATCATTATCATATGTCCTTGATATACTGAATAAGGACGTGGATATCAATCTTAGAGGAAAGTAACATTTCATAAATCTTGGAGAAATAACCAAGATTGTCCAAACAAGCATATGCTTCTTGACAGCAATGTGACAGAAGAGTCTAAGACAcagataatttataatttatctcTAAACCCAGATTGAAGAAAAACTCCAAAGTAACATTTAGTATAAACTGCTTCTTTTTATGTCACACAAGACAAAGaagtttttgattttctttttttgcagtaagTGGTATTGGGAGAAATTCTCCTAGGGTGCTTCTGGAGTGGGGGaggaaaacttaaaacatttctcTTGGTTGTCAGTttctgaactttatttttaaattttcttaatttttaaa

a score=83787
s chr3           143450329 3111 + 160039680 acaCAGAATCAGAAATATTGAATCAAAATTTGAAGGTAAGTGACTTTTACAATT----AATATTTCTTTTTATAAAACAATGCACTAATGGCTTGTTGACTCTGTTGAGCATCTTTACCACAAATATGAAGAGACAT-TATTCAGAGAAGTTGACCTGTTCCTGATAACTCTCTAGT-------AGCTACTCTGTGCTGTGTGGAGATTGTGGAGACAGGTGC-----AAACTCACAGTAATTATTGTTATGCTGCAGAATTATCCTTGTGCCCTCAGTAGAATTTGAGAGTGTGTCAACAGAATGAGAGAATGTAACAGCTCTTTGAAGTATGCTGAGTTGGGAGACAGAGAAACTCAGGTAAAGAGGG----AATGCACAGGAGCCCTGTTG-GGATGCAGACAAGTGATGCACCAGCAGGCCTCACTGC---AGAGTTAAGAC---AAATATG-TCTCCTTT---CCTCAAC--------------TAAATTTTAAGTTT-----------------------------------GTATGTACTCCATTTTTACTTAATCTGTTTATTG-TCAAT------------------------GTATTGC------------AAATGTAAGGAT-GCCttaaaaataaaaataaataaaGACAAGCTTTGATTTTTTTAAAGGAAAAACAGAAATCCCGCCTTTT-AAGAAAAATAGAGGTCAG-------AGAAGACCCAAGTGTGTTTATGCATTTGTGCATTGTGGATATATGTGCAGTATTCGTATGGTGTGTTATGTGTCATGAGTATGTACATTTCTTGTGTGTTGTGTGTCTACTATATTTAAAATATATACCTCTTATTAGTGCTCCCAAGAACATGGCTCACCAGAGAAAAACATACATCCTCATGTGAATTGAAGGGAGACCAGCAGCTTTTGGAAAAAGATTCATTTCTAAATCTATTGAGATACTTAGTCAGAGTATCTGATATCGTAAATGTACTCAGCTAGTTATTACTGCTAGAAGTGATTTCGATTGGACTGACGCAATCCATGTCCAAAGCAATCCTATTTCTCTCTAAGACATTTTTAAAGGA-ATTATTGTTCTGTGATT--ATCTGTAGATGTTTTTGAATGTTCCAATTTGTAAACCTAGTAGAATTCTTTAAAAAAAAACAGGAAGCACTTGTTCAACACATGTAATCCAGGATGGAAGACAGAGAAGG--------TCAACGTCTTACATGCAGGTGGTGCACTGTTCACACCTACCATCTTTTGGAGTCTTTATATTTAACTGAAGAAACCTTAGAAGAAGACAATTGCTATTAGGAATTA------TGTAAGCTGGACACTCACATGACTAATGCCAGAAGCCACTTTCAGTAAATGACTTCAAACACTGAAACGAAGGAGTAAATCCCCTGCCTGGGTACCGCTTTTTCTCCTTCACCTGCCAAAAGTGTAAATATTTTTAGAAATATATTATTTACAAGGCAGGGAGCTTTTGGGGGGAAGCGTTGGGCTAGTAGAAGAACGCAGATAAATGTGGTAGCAGGGAGAGCTTTATGACCACTCCAGACTCAACTGTCATTGCTTTGGTACTTTCTGTCAGTCTGACTAAATCCTGTCATCCCTCAACCCGGTTTAAATTAACAGGTAATTTGTAAATGTCACTTCAGGTTAGGCCGATCATTTTGTTTCTACTCTACCAATGCAAAGTCTAGGACTAATTTTTCTTGTCTTCTTTTAATAGGATTTTCATTTATAAATAGAATTATGTTCTGAAAATAAATTACAGTAAGTGATGCA-GGAAC-GGTGGCAGTACCACTCTCTTGGAATTTCAAGCACCTCCATCAGAAAAGATTAATAAAAACACTTCAAAGGCTAAATTCCATTTAAGCAGAAGACAGCTTTTGGTTAATATTTAATCTGAGTCACTGAGATCTTGGTGGAAAACataattttttaatatctaaattaattttCAAAACAAAACCATTAATTTTGTTTGGAGGGTTTGTGCAGGGAGAAACTTTCAGTAATATATTTGCAGAGGGAAAAGTTAATCAATTAATTTCTGTGGTGAAAAACAATAGCTTTGACTGTTGTCTTTGCTCCAAATGAGTTTCTTCTTATCTGGTCAGGTGTAGGCCTTGAGAATTCTTTCTCCTGGGCTGTTCC----------------------AGCTCTGAAGGGAAGAATCTTT---TCTAGAAGTCTCTTCAGGGACTGTGACATCCATTTCTCTGGTTTTTGTGCAAAGGCCCCAGCAGGAGCCCGAGCCTCTGTACAGCTAAGACGAGAAAAGGAGCT-ACTAGGAGT-TCCCCGTGGATGCCCTGAGCATTGCGGCTGCTGGGGGTTTCTGGTGGACGCCCTGGGCACTGCCACTGTGGCAGGTCCATTGCACTGATGGAttctttttttttttttttttttttCAGAGGAGATTAGAATTGGAAGCTGCAGTGGAGAATCAAATCAGGCTAAAAGGGAAAGCGAGAGGC----CTTTCTAAGTCACATGTGAAGCAGCTACCAGATATTGATTGATGGTGGGAGACAAAGAACCAGTATCTGT-CATCAG-GTTTATCTATATCTGCATCTTG---ATTGGTAGAAGAGTCAATGTGACCATGTGTGCCACCTTACCAGTTTCGTCATTTACTAGCTCTCTAGCCTGAGGCACATGCTTTC--TCCGGAGTTGAAAAAAAATATGATTTGAAAATTTACTGTATGTATCTGGTCTATATTAGTGGCATCCA--TGTAGCTGCAGTGCATAGGGCATGCTCTAATCCTATTTTGTGAAAGCTACACACATAACCTAGGACATCACCTTTATTGCC---TTCCTAGCCAGAGCTGAAAACAGCTGGGCCTAGGAA--------CTTCTTTCTTCCTTCCAGCCATATAGTACCATCTT--AGCAGGAAGGTAAAGGGATGGTCTAATTAGTTCAGCATAAAAATTAATCTAATAGAAACCTCTATTTCAAACCAGCCTGC---TCCAATACTACCTTCTCCCTCCCTATCCTGTTTTGTGACTGTTCTTTGTAGACTCTCCTATCT--ATGCTGACTATGCTATGTGGAGATATAGACATTCAAATAGTGTTGGAAGCAGGCTTCC---ATCAAATGTCTGCTCCACCTCATGTCTTGTGTGGTTCAGTGAACAAGCGTCCTGAGGGCTTTTTAATTCCCCTAAGTGGCTGTTTTCCTGCTGGACATGGGCTTT--TAA-TATAGTC--ACGATCTCATTGTGGGAACTTGGAAA
s HiC_scaffold_1 129643840 3021 + 233722169 ACACAAAATCTGAAACACTGGATgaaaatttcaagataaaatacTTTCTTACTTTGGTAACATTCCTGTTC-TAAAACTAT-CACTAATAGTTCATTGAGTCTTACGGTCACCTTCTccacaaacacaaacatgcacGTGTTCAGAAAAGT-GACCGAAACTCAACAATTGTCCAGCGTGAAAGAGTTACTGGAAGCTGTGTGATGATTCTGGGGATTAGGGTCTGAAAATTTCCCAgcagttattttcattttacagactCATCTCTGCACAGTCTGTCGAACTCCAGAATGAGAAGACAAGGAGGAAGCCTGCCGCA-TTCCCTGCAATCTACTGTGTCCTGCAACAGAGGAACTCATTTAAAGAGGGCAAAAGAGGACAAGGACTTTAATGAGGATGCAGGCAGATGAAACAACAAGGTATTTTATTGTTATACatttaagaatgaaaatatgGTCTCATTTGTATCTTAATATtactatacttttttatttttaaatttttgttggtaccaggaatctaactcacacttgccaggcaggtgctatgctgctgctTACCCGGtatatggctcagcagcatagctaTATACCGGGCCCCAGTATtactatgttttatttaaatgtattgatTACCACTAATTTATAAATCAAGAAGG--------TAtcccacttaaaaaataaataccactcttgcttttttaagataaaaggagattaagataagaAGAAGAC-------------TACGATTGTGC-------------------------------GTGCTTTG---CATGGGCATGTGCACACC------------------CTACAATCAAG---TGTAGCTCTTGTTACTGCTGCTGGGAGCACC-TTCACTAGACAGAAA-ATACACCTCCTCATAAACTGAGTGTGG----------TCTGAAAA-----TAAGTTCTAA--CTATTAAACTCTTCAG------------ATGTGCAAAGTGTCTTCAGATATTTATTCTGGCTGGCAGTAATTTAAATTCAACTAA----ATCCAAATCTAGAATAATTCTGCTTCCCTCTTAGACTTCCTTCTAAAATATTATTGtttcaagattttatttaaagataatttttgatGTTACATTGCAAAAAtcttgtagaaa-----aaaataaaagaatcagcaGTTCTTTTTCAGAAAAATCCCTAGGAGTAGGTTGAGGGAGGAGTATAGATCTATAAGCTCAATGTAGGTATTCAGCTGTGTGTGGC--CCAGC-----GGGCCCTCATGCTTAATTGAAGACACTCAAGAAGGAAGCGACTGACATTTGAGCTTAAACAGTTGGACGGTGGGCACTCACATGACTAATGCCAGAAGCCATTTTTAATAACTGACTTTCTCCCTAAGAACAAAGGACGAGAGCCTCTGGCTGTGTATAACCTTTACTCACGGGTCtgccaaaaatgtaaatatttttacaaatatattatTTACTAGGCAAG-AGCTTTTGGGGAG--GTGGTGGG-TAGTGGAGGCACACAGATAAATGTGGCAGCCGCGAGAGCTTTATGACCACTCCAGACTCAACTGTCATTCCTTCCGTACTTCCTGTCAGTCTGACTAAACTCTGTCATCCCTCAACCCGGTTTAAATTAACAGGTAATTTGTAAATGTCACTTCAGGTTAGGCCGCTCATTTTGTTTCTACTCTACCAATGCGAGGTCTAGGACtaatttttcttgtcttcttttaataggattttcatttataaatagaattatgttctgaaaataaattacagtaaGTGATGCACAGAACGGGTGGCAGCAGCACTCTCATAGAATTTCAAGCACCTACATCAGAAGAGATTAATAAAAACACTTCAAAGGCTAAATTCTATTTAAGCAGAAGACAGCTTTTGGTTAATATTTAATCTGAGTAGCTGAGATCTTggtggaaaatataattttttaatatctaaattaattttcaaaacaaaaccattaatTTTGTTTGGAGAGTTGGTGCAGAGAGAAAGTTTCAGTAATATATTTGTAGAAGGAAAAGTTAATCAATTAATTT-TGTGGCCAAAA--AGTAGCTTTTAATATTGCATTTGTTCTAAATGAA-TTCCTATTATTTGATCAGGTATGGAATATTAGGCTTCATCCTCCTGAGCTTTGCCCATCTCAGTAGGTAATGGAAAAGGCTCT--AGGGAaggatctttttctttcttattatcttCCATGACCGC--CTTGCCCTTCACCTGAGCATACGGAAGACCTCCAGCTAGACCCTGTAGCTCTCCACTCCTAAGACTGGAAGGTTGGCTCACTGGGTTTGTCTCCTTA-----TCTAAGTTTT--------------------------------GGCATTGTCGCTGTAGAAGCTTCACCAAAATAat---tcctttttt-----------------gaggagatgA---------------------AATCATGTCAAGCTAAAAAGGAATATGAGATACTTTGCTCTTTAAGTCACATGAGAAATA------------TAATTGATTATTCAAGATCAATA-----TATCTATGCATTTGTATAGATCTATACCTGTGTCTTGAAAACTGATGAGACAATGAAGTTGACCAATTGTGCCATTTTACCACTTCTGCCATTTACCAGCTTTGCGGTCTTACAcgccttttctcctttctgagtTGAAAAACA-----CTTTGAAAATCTAACACTTATGAATGCTCTAACTTAGCAGGAGTTGATTGCAACTGAAATGCGTTGCATAAGCCATAGTCCTATTTTATGACAGCTACTGACATAACCCAAACCATTGCT----TTGCCTAGTTCTTAGCCAAGATAGGAGATGGCTAGACTGAAAAACACTTTGCCTTTCTTCTGTCTGGCAGCC--ATGGCAGCATGTTAAAacaggaagacaaagaaaatatc------------cATTGGAATTAGTTTAATGGAAGTTCTGGTTTCAGACAAAGCAGCCATTCCAATGTTGTGGTCTCCTTCTT----------------------------GCTCTATTATCTGCATGCTGAATGTGAGATTTACAgacaaagaaatgtaaatgttcTTTGTCCCA-GCTCCTAAAATCAACTGGTTAT----------------TGTGGTTCAACAAATGAATGTACTTCAGACCTTTAAATTCACCAAAGTGACTATCTTCTTATTGGACACAGAATTTAATAATTAGAATCATATGACCATATTACATAAATTTGAAAA

a score=131221
s chr3           143454148 5393 + 160039680 [encoded data, 5709 characters]
s HiC_scaffold_1 129647942 5277 + 233722169 [encoded data, 5709 characters]

a score=71104
s chr3           143461071 2348 + 160039680 TCAGATTCTGT-TTTAAATGACCATGTTTTAGAGAGATT-TTGTTTTACTTTAAC--------CAAACAACTCA--AGAACTCACTTCTGA-TCTCTGTAGCATCTAGAACGTTTTCCTATCTGTGGCTTTATT---TGTTTACTTGCAATTTTGA------------------------ATAGTTATGAACCAGGAGTCCTGGATCCTATATGATAAAGGTTGAAATGCATGGATT---GAGCTGGCTGTCCTA-----GGAGATATGCCACATTCCACA--GCTCTCTGTTAC----TCTTTCTGCTCCATCATGGTGTCTCCTGGAGGCT--------------------------CTCCTCTCTCTGAGATTCTGGAATTCTCTCTG-ACCTCTTTTAGTAATGCCTAGCATTCTTTCATTCATA----AATTATTTATGGCTTGTTTAACCTCCCTAGCTCAACTACTAAAGGTGCTTTGAGTAAGCAGGGTGGATTTCTTCCAGAAC-TATAGAGCCCATGGTTGAGATCACAGCTCCCAA---GTTTCTTGCCATGG-----------------------------------------TTTctcagtcctagagaagacttgcctcaggttactg-actgatacagggattagaacctacaacctctgagtacccactctgt-ggtttAGTGTTTTGAGTCAGACTTCATTCAGTTTCAGTAATGAGCCCTTAGAAAGCTGTGGGGGTCA-TCCCATTTGGACCTGTGTGAAGTTTGGATTCAGCTAGCTGTCAAAGCCTCTCAGAGAACATTTCTGTATAATTTGTTGTATTGAAAATGAAATTAAACTGATGTCATTATTCACTTTC-CTTAGACT-GGATGTAGCAGTGTTATATAGACAGAA--AAAGTCTATAATCATCACATGTGTGCTAAGGTGACATTCAGATGCATCTGTTTCCTCTCTTGGAGTCACCTGCTGGAAGCCTATTGAGTAAATGTTAATGAATTTGGGTATACCTCAGCTACAAATGGATCAGAGCTTCCTAATGGAACATTACAACGACCTAGATCCACTTGGCTTAGTCTACTGATTTAAATTAGGTTGAGCACCAAAGCCAGTAAAATATATT-AGAGAGGAATTAGCTGTGTAGCTGGAGCAGTTAAAAGATGTTCTTAGAACTCCAAGAAGAGGAGGGAGAATAAGAATGTCTCTTTGTATCCATCCAGCCTAGAGCTTCAGACACGTATTTGGAGAGATGGGCTGACAACTCAGCTGTGTGAGTGGAATCTGCCATGTGACCCCCATTAATGTCTAAAGATTGCT-CATAGTTGAATCTTTAAAACATCATGCTAAAAGCATGCCGTCAAGTGCCTGCCAAATTTGGTTTTAGAATTCAGCTGTTTTAGAGCTAGAGGTGAGGACTAAAAAAGAAGAAGAAAAAAACCCAACATTGTTGTTTTTGCTTTTTTTT---------------TTTTAATGTTGGATTTCTCTATTTGATTCATTATTTAAGAAAACAGTGTGCACCTGCCTCTC-AATCTCACTGAAATCTCTAAGTG-AGGTCTTGA---------CGTGTCTGCCCTTCTCAGTCTTTAACAA---CTACCATCATGAGCTATACTCAAG-TCTAATATATTTAATTAATTCTGGCCTGTGTCTATTACCATTTATAGCCCACGTGTTTTATTGTTTTATTTCCCACGTGTCATCTCCCCATCATGAAAAGATAAATATTCAAGTGTATAATTAGTAAACACTCTATTTGTTGTGGGCTTCCACTGTAATTTGAAACATTGCCCCATGAATCTAGCTCATGGTACCTGCTGTCTTACTCATCTATTTAGAAGGTACATTAGGTCAGCCAGCAACTCAT----ATAGAAAACTTAACTTTATCTGCCTCCCCCCCCTCCTCTGAGGGATGCTACTGTTTGAAAAATAATGTACACAAATCAGAGTTGGTAATACTTGTCCTCAGATAATTTGTACAATTGTGCATGAAATTAGTTGTTTTGCTACATTTCCTGAAGAATTCATTGCTTCTTCAGTAGACACAATCTCACTAGTCATATGAAACCAAAATATCTCCTTCCCAACACCACATTCTCCAAGAGCTTTCCCTCTGCGTGGGTCTTCTGCAAAAATGATAGACAATAAATAATGCTCATTCCTAAAGACTTCAGCGTGACTGTGCAGCCACACATCCCAGATGAGG--------------GCTTGGAAAGAATTCCCAACCTCTGATAGATTACTTCTTGGTAAATTACGGTAAATCAGAAAAGTTCAATAGAAAGTTTAATAAATCAGCTAA-TTTGattttataattaatatttataGACAGTTACTTGGAGTCCTACATCAAGTTCTAAACATGAAACCTAAAGGAAGATGGCTGATCCTGGAAACATTTGGT---------TTGTCATATTCCACCTTTCCTTCAAATGAGAAT-----AACAAGTGAAGTTATTTTATGTGGGGAATATGTGAAACAAATA
s HiC_scaffold_1 129655257 2420 + 233722169 TCAGATCTCATGTTTTAACGAGCATGTTTTGGAAACATTGCTATTTCACTTCAACAGTCTAGTCACACCTATCAGTATATATAGTATTTGAGTAGTTGCagtatttcaaatgttttcataCTCATTGTCTTCCTGAATCTTCACATCTCCCTCTGCCTCCACCACACACACGGCACCTACACGTTTACAGGCCAGGAGCTATCATTCACATTTTATAGAAGGCAAAGTACAAGGCTCACAGAGGTGCTGGCCCTAAAACTGGTAAAATGCCTTTTGTCATAATGACCTTTGTCATAAATCCATTTTAGCTCATTGCAATATCTACTGAAGGCTTCCTGGGCCTACCAGTCTCATATGCCCTCTACTCTCTGAACTTCTAgaattttctctgcatttttgtcAATATTTCTTAGCTTGCTTTTATTTAGATTCTACTTGTTTTGGGTTTGATTAGCTTCTATAGCTCAATCATAAAAGCTCCTTCTGGCAAG--------ATGTTCCCCAGGATATGCGGAGCCTATATTGAGGCTATCAGCCTCCAATAAGTTTGTCACCCTGGGTAGGAGTCCCACACCTGGAGTGggactccttttccttttctttttcagttctggC-AATCTTTGCCTTTGGCTGTAACACTGACAGTGTGATTAGAACCCTCAACCCCTGTGTATCCTCTTTAAAGGGTTAGCCCTTTGAGCCATTCTGCATACAGGTGTAGTAATTAGCACTTAGAAAACCATTGAGCTTACTCCCCATTTCACTCAAGCAAAGTTTGGGCTCTTTTAATTGTCAAAGCCTCTCAGAGAACATTTCTGTGTAATTCagtgtattgaaaaataaattaagctaCTGCTATTATCCATATTCTCTTAGAGTCAGCTGCAGCAACATTATATGGACAGAACAAAAATCTATGACAGTCGTATGTATGGTAAGGTGACATTCAGATGCATCTGTTTCCTCTCATAAAGTTACCTGCTGGAAGCCTACTGAGTAAATGTTAATGAATTTGGGTGTACCTTAGCTGCAAATGGATCAGATCTTCCTAATGTAACA-TAGGGCAACCTGGATTCACTTGGATTATTCTGCtgatttaaattaaattgaaCACCAAAGCCAGCAAAATGTATTAAGAGAGGAATTAGTTGTGCTACAGAAACATTT-AAAGGTGTTTTCAGAGctcaaagaagaggaggaagaattaGAAAGTTTCTTTGTGTCCTTCCAGCTTGGAGACCGAGACACATATTTGGAGA-CTGACCTGATGATTCTGTTGTGTGAGTTAAATCTGCCATGTGACCTCCATTAATGTTTAAAGAGTGCTCCATAGTTTAATCTTTAAAACATCATGCTAAAAGCATGCCATCAAGCGCCTGCCAAAATTGGTTTTAAAATTCAACTGGATTTTAGATAGAGGtgagg--------------aaaaaaacattaaagatgctggttttttttttttttttgctgtttcaaaaaatttaaaaactagatttCTCTATTTgatcaattatttaa-aaaatagtactaaATTGCCTCTCAAACCAAATTGGAACTTGTAAATGCAGGTTTAGAACCTCTCCCTACACCGACCTCTCTCAGTCTTCTACAAGGTCTGAAATCACATGCTGTACTGaagttttaatgtatttaattaaTTCCTACCCATGTCTGTTAGCATTTACAT----CATATTACTCTGTGGCTCTTCATATGTGTCATCTCCTTATCACGAGAGTGTAAATATTCAAGTGTATAATTCATGGCCTCTGCTTTTGTTACAGCTTTTCATAATGGCTTTCAAGATTT-----TGACTGTAGCTTGTAACATTTGCTGACTTACTAATCTTATGTAAAGATGCATTTGGTCAGTCAGCAACAAATACTCATAGAAAGCTTAATTT----TGGCTATTATTTTTCCTCT-AGGGAACCTTCTATGTGAAAAGTGACCAAAGCATGTTGTAGTTAGTAATATTGGTTTTCAGCTTGTTTGCACAATTATGAATGAAATGAATTGTTTTCCT------------------------------------------------------TGAGTCCA------CTGTTTACCACTGCCATATTCTCCAAGGGCTTTCCTTGCACTCAAATCTTTTGC-CAAATGCTAAACAACACAGGATGCCTACTCATAAAAACCTCACTGTAGAGCAGGAATTGTACATGATAGATAATGATATTTCACCAACTGCTGGGCAAGAAT------------ATGGTTTGTTTCT-------------TAAATCAAAAGAGTTCCATGGCAAACAGTGTAAAGTGGATAACTTTGATT---TAGTTACTACTGGTGGACAACTATTCTCAATGCTACATTAGGTCACCAACATGGAACACATCATGAAATGGCTAAATCTGGGAGCATAAAATAGCCCAAAATAATGGTTTTCCATTTATTCTTCCAATGGAATTCTTgccaaaagtgaaatattttcacgtggaaaatattcaaagcaaaTA

a score=201020
s chr3           143463966 8035 + 160039680 [encoded data, 8829 characters]
s HiC_scaffold_1 129659322 7991 + 233722169 [encoded data, 8829 characters]

a score=239959
s chr3           143493152 6465 + 160039680 [encoded data, 6876 characters]
s HiC_scaffold_1 129679183 6456 + 233722169 [encoded data, 6876 characters]

a score=41386
s chr3           143500473 1473 + 160039680 TCTCAGTTTGTACAGAAAGTGAGAGTACACATTCTTT----CTTCTAAACCATGATGATTCTGT-AGGCTCTTCTGCATCTATTGTGATGATGCTCTCAGTCTGGTTCAAGAAAGAGACAAAGAAATCCAGTAAGTTCAGTGAAGGTTGCCTG--ACTCTAGTGATAGGTCACTGGCAAACTTAATC---TATAAACAG-----------TTCACAATAAATTACAACTACTGTCACTTTCCCGTAGCTTTCTGT-GAGTCATAGAACAAGGAGAGGTAGTTCTCTAATGGGCTTCCCTGTTGAAAAATTTGTGAATAAATAATGAATTTTTCTAGATGTAGTTGTTTAAGTTAAGCTCTT--TTACTCCAGCTCAATTTCAGACCTATTGTCTGCTAATTCTGTAGTAACTGTTGACAAAGAATGGAAAGTTAAAACCACAGAAATGAAAGATGTTACATTTAGCATCCTATGAAAGGGAACGTGTACAATGTCCAGGATAGACAGATAGTCAGGTTCGAAG--TTGCTATTGTCATAGTGGCATGCTAAAAAGGAGAATACAGATCC---------------------CTGACTTGGGATAATAGTCAGTCATTTATTGACTCCAAAAATCATAAAATGAATCCTTGTATTAGGTGAGGAGTTGGGAAGCAAAGACCTGGCATTTTCTGTGAATTCAGGAGGATTCCTCTACTCAGCATGACACCTATTCAAAGGGCTCCATTGTTATCCTAGGGAGAAGTGGAGAGATTCAT----AAAGGAGCTGAAACACGTGGCCCTTTGTGGCACTTTACTGATGACTCAGCTGACCTTGCTTGCCACCCAATGTGAATCTTTCTTAGATTTTTGTATTTTAAGAACAGGGGCTCCATTGGCAAG-TGACGAATCCTATTGACAGTGAAAGATTTTTATGGCCACTGATGCTCAACAGGAAACTTCAGAAGACCAAATGGACTAAGGTCATGATTCATTTGGGCATAATTTCAAAGGAAACTCATTCCCAAACTGATGACTCTCTTCCATATATATATATAGCACATTTCACTCTCTGCCCATCATTCAGAG----------------------------AAAAGAATACCAAACCCAACAGGAAATTGACGGCTCTACAG--------TATAAATAAACTTGGACTTTGCAGATTGTTTGGCTCTGCTCTCTTTGGTTG-GATTATGAGGGAATAAATCATCCC----------TGGTGTGACAGGGGCG-----------ATATGCTGTTATGAATCAACACATTCGTATGTCACGTACAAAATGTTGCTTTTAGCAATTTACATAGAGAACAATGAAGGATTGGAGCACATTAATGAATTAAGTGGCTCTTGTACATTCTAGAACGATGCTGGGAAATAAAAATTTCCAGGACAATCAGCAAAACTAAAAAAATCATCTGAGGTTTTCCTAGCAGATTCCTTAATGTACTGTTTATTCACTTGCCATTTATTTAGAAGAATCTGAATATAGAATTCCAGAAAAAAATATTAAAGACTTAGTAGGAAAAGTGAACTATTTTAAA
s HiC_scaffold_1 129687211 1523 + 233722169 TTTCTACTTGTATAAGGCTGCAGAGTACG--TTCTTCTGGACTTCTTAACTCTGAAGATACTGTTAGACTCTATAGCAGATCTTGTGATTTTTATCTCGATCTGCTCcaaagtaga-ataaaaaaatgaactcAGTTAAGTAAAGGTTGATTGTGCCTTTAGATACAGGTCACCAGTAAAATCAGTCATATATAAACAAACTAACAAATCTCTATTATGAAATGCAACAGCTATCACATTCCTATAGATTCCTattgagaaataaatca-gaagaaTTAATTCTATTGTGTGTTTTCCAGCTAAACGATTTGTAAATACCTAACTGAATTTTCCAGATGTAATTGTTTTaactgagtttttattttttgctgccCAATTAAAAATCTATTGTCT--CTATTTTCTAACAATTATTGACAAAGAATGGAAAGTTAAAACCTCA---CTGAAGAACATTATATTtagttttctatgtaaaataactTAGAAAAT--CTAGGCTACCCAGATAATTAATTCTAAATACTTACCATTGTCCTGACGGGATGCTCAGAAGGAGAATGAGGTTTTTACTTCAGCACCTCGAGGATACTAACTGGGCACAGTAATGA----TTTCCAGActctaaaa-tgataaaatgaatccTTGCAAAAAGTGATACATGAGAATGATGAGAAGCAATGTATTCCATGAATTTGAAAAGATTCTTTTATTCAATATGTCATCTGCTCAGAGGATTGAGTTGTTAGCACCAGATGAAACAGGCAACTACACTGTCAAAGG----GAAGTGTAAGGACTTTTATGCCTGGCTATTGATGACTTCAATGACCTTGCTTGCTGCCCAGTGT-AATCTTTCTTAGATTTT-GTGTTTTAGGAATCACAGTTTCATTGGCAGGATGAAGTGGCCTAGTGgcagtgaaatatttttatgaccACAAACACACAA-AGGAAATTTTAGTAAACAAAATGAACTTAGATCATGATTCATTGGGGCATAATTTCAAAAGTAACTCAATCCCAAACAGGCCACCATCTTCc------atataaaacacatttaa---tccGTCTATCATTCAGGGTCTTCCCTGAATGTACTCTCTTGAGTACATATGTGTACATAAACTATCAGGAAATACTCTGCTCTGTGATCTATACCTATAGATCAAATTAGACTTCCCAAGCTGAT----TCTTCTTTTTATGGTTGAGATTGGAACAAAATCAACCATCTCTGTCACCATATGAGGTAGCAGGGGAGAAAGGGAAGATATATCCTTTTGTTAGCCAACATGTTTATAAATCAGGTGGCAAATCTTGCCTTTGGTAATTTACATAGAGCATATAGAAGAATTGGTGCCCATTAATGAATTGTTTGGCTACAGTAGATTGTGGAAAGAGTTAGAGAAGT--AAATTTCCAAGACAATATGCAGAAAT-TTGAAGTCAGGGGAGATATTTTCAGCAAATTCTTTCACATATAG-------------------TTTAGAAGAAAGTAATTATGACATTTCAG--ATAATTATTAGAGACttagtaggaaaaataaaatatttaaaa

a score=9546
s chr3           143502068 562 + 160039680 TAGACCCAGGACAGTGATCCTACGTTGTAATAGCCACAGATTTGCTGCTGAAGATCTTGTTTAAATTGCCAAGTTGATTGTTTTGAATCTATGAAATCTTG----AGTCAAAATATGATAGCAGGTTTTGGGTGGGTGCATTATTCATGCATTTTGATGAACATCCCATATTGTCAGACTTT------------------------GTATGGGGGAGGAAAT----------------------GTTGTCATGC--TTTTGTATACAGACACTTAGC----------ATGCAT--TTTATCTTTCTAGGACCTAAGTGATGGC-AATATTACTGATCGCTTTATTT---CTAAAGGTTAGGGGAGAATGATAGAAAGACTTTGCATCCCCAACCCTGAGGTGCCCCTGTAATCTTGTTTGGTAACATTTGCTTTAGGTTTAGTTTTTGTTTGTTCAT--------TTTGATCCTACTTGGGAAAAAAAGTACCTATTGAGATTTT------------TTTA-----AATACATGTGCAATATAAATTACACGCCACCATGCATTTATT---AGTTATGTGTTAAGATAACATT-TAT-CTCATTGTT---GACGGTTACACCAAATCTCAGACAAGTTAACTTTCTTTAATAATGAGAGCATT
s HiC_scaffold_1 129689320 639 + 233722169 TAAGCCTAGGAGAGTGGTCCTAAAATGGGATACCCAGGAATTCATTGCTGAAGATATAATTTGAACTGCCAAGT-GcttgtttttactttaaacaaTTGTAGGCTAGTAAGAATATGCCACCAGATTTTTGGTGGGTGAATTCTTCATGCCTTGTGATAAACATCCTATATTTCCAGATTTCTTGTCAAATAATTGGTCATGACTAATCTGTAGgactgaattttatattttttcttttttttagttaacATGCTGTTTGGTATGCAAACACTGTGTTAAGTCCTAGATACATAGTTCATCTTTCTAGTACTCCAGTGATAGCAAATATTATTGTCATCTCTATTTTTCTTAACTGTTGATATTGAAAGCTAGAAAGAGGCTCAGTTCCT--------------------ATCTTTCCTAACCATggatcttttaggttttgtttttgtttttatatacaaCAAATTCAATCATATCTG---AAATAATGATCTACTAAGATTCCAAGATAAAAAGAATTAGGGCCAGTTTACGTGTTAGGCAATTTACATAGAATAACTCATATAATAACAACTATACCTTAAAATGGGATCATATCCTCATTGTTTTAGTTGAAAAAGAAGAATCTCAGAAATGTCAGCTGACTTTTACAATAAAGATGTT

a score=148156
s chr3           143506671 3547 + 160039680 AAGAATTGCAGGAAGAGACCAAGATTGTGTGTGTGCACCTATGTGTGTAAAGAGCAAGCTTTTAGTCTACTCTTGTCAGAGATCCATGG----TGCTTAAACCTGGTATGTCACAGTTCAGTTGGGTGGCA------ACAGATGCCTT-------------CCCTTGCTCTGTAAACCAGCAAGCACAGACAGGAGACAAGGCTTTCTGCTTATTTTCTCACAGGGTCATTTTACAACTGCTTCCCTCCTCAAACTCTGCAGTCATGTTGCCTTGCTTTTTAAAAGGTTGTTTAAAAAAAAAAGTTCATCAGTGCTGCTTGGCCACC-TCTTTCTGTTAGACTCCACCGCAAGTTTGTGATGGCTCAGGGTTCAATCCCAAAATTGTCCTTAAGTAATCCAGAATGGGTTAACCTGGTGCTCCGAATGcatacacacacacacacacacacacacacacacacacacacatatacattcacacacacacTTACTTCCGGGAAAGTTAAAAATGCATTTCCCTTGTGTCACTGCCATTTTCAATTCTGAGC-CAGAGACGACATGTTACATAACTCGGGATTTCAACAAACACCTGGAAATCAGGCTGTGTGTGTCGCTCAGATGAGACCAGACATGAAGAGATTGGTAGTGACAAGTGTTGTCACTTCTCTCTCTGACAGCAGGCAAGTGGCAAGCCGTATATACAAGGCCTGATACCACACTCTCAGGATCAGAGGGGgaaaaaaaaaaagaaagaaagaaaaagtgaaaaaaaTAACGTTTCAGCAAGAGATATCTGGGAAAATAATGGCAAATTACACACGATTTAGCTTTGCTTTTAGCTTTTATAAAAACCCAAGAACTA---TGAACTGAGCAGTTGAGCCCTAATTAAGTCTCCTCTTGATCATTTGCATGGCAGACCCAATTCTCAGGGTATTTTCTTAAAAAGCATCGTATCAGCCTCTAATTCAACTGTTCTTTTTATTTCAA----TTCCTTATTTTCC-----CCCCTTGGGTAAAAGAGAGGTTAATGTGAGCCATTAAGAATTAAAAAACAATTACACAATGAAAA-AATAGTTCAGATGAATTTTAATTAGAGCCCAATGTAATGGAATTTGAACCCAGTACACCGGAAATACATAGCCAGAACTCTAGCCATTAAATCTCAGAGCCTTTGATTAAACTCAATGGGAATTTAGAAAGATTCTTTTG-CTGCCCGAAGATACCATGTTTTTTCCATTAATGTCAGAGAAATATATTGAGGGACTAAAATATTACTAATAAAAATAAATGTGAAGGTTGTAAATTTCAAACAATGGAAGATACAGAGCCCGTACCTGGATTTTTAAGTGAGTATGTGGCATTTCGTTAAGATTAAAGTTGAAAACACAATGTATTATGTGTGACCTCTTTAGAAAGGGAGCCTAAGTAATTCCAGGATTTGCCATCCTTTGGAGTATAAGAACAATAAGTCAGAGACCGTGGAATGGTCTGCTGCAGGCTGAGAGACGATCGTGGAAGTAT-----TCCAGACAGGGGTCAGATGCGAGGCACCAC-ATGGCATCCCAGCATCCTCCCTTATTCTACTGCCTCCAAGCGGTTTGCTTTGCATCCATAAAATGGGGACAGTGGAATGGACCAATTTGAATCAAAGAC--TATGACTAAGCTGCTTAATTCAAATCAAGACACACATCAAATTTTCCCCTAAATGGTGAGGCATGTTAAAAGTGAGGCTCAATTCCTGAAGAGATTTGACCTTATTTTCTCCTCAGTAAGTGATTCTATGTCGAACCACTAGGCCTCCTAGCCTTGAGAGATACCCCT----GTCTTTCATAA-AACTCAGTCAGCCACTGGAGGGAGCCAGCAGGACTCATACAGTATAACTGAATATGATCAACCAGTAGGGAAAGATAATTTTAAAATGGCATATAAAGATGACAGAATTTGAACAAAATCTCTTTTATTTATTTATGCCAAAATCTGTGTGAATGTAAAATGCCAACTCTATCATGCTTTATTTATGGTGTGGCTTTTCTCTTAAAAAGgagagagggagtgggagagagagagagagagagagagagagagggagagagagagagaaagagaTGGGACCTAGCCTGGTTCACA-----------TGGCAAAAGACAGAG-TGTCAAAAGAGAGTGCCGGTCTcagtactcacctaccctgtc-------------ttggcacagct------gcttcatctgggcagcttttaaaaccctttgcttgccaattcctgcagc--agaatcaagccagtgccctctctgtggatagagagatgtgcaatatgtaaaattccccaagacaatttttatttatagctgttgcaaacAATGTTTATACAAAGTTTATTAAATGTGTCACCCACATTGATTTATCCCAACCAGTCTCTTCAATCACTAATATTTATGAGATGGGTTCAGTTGCAACAATTATTTTATATGCTATAGAGTATGTTATAACTAGGGATTCACCCTGGCAATTATATCAAAGATAAAATGCTTCCTGAGGGCCTCGGGGCAGGCCAGAAAGTATATTATTGGACACAAGGTGGTTTAAACTGAGTATCACAGCACTAAATTTAGAGCAAGAGATGTGGAGCAGCTGATGCTTAAAAATTAAAACGGGTTTCTTGGGGTTCCAGGAGTCCCCTCATTTATGGGAAGGCAGCAGCCGATCTTGTGCTCATTTGTTTTCCCACACGGAGACCTGAGGCCTGGAAACGCTTCC---GTGTCGACTCTGAATTTCTGTGAGC-CTTAGCTCTCAGCAGCATTTACCTAGTGCCCAAAGTGGGCAGAAGAGCTACTCTTGGCTTGCACAAACATTGACAAAGGGAACCAGACACATGCTATTTGCAGCAAGGAATTGACAACGTCTGCAGAGTAGCAGAAACACTGTTAACAAAAAAGAAAAAAAAAATCACTAAAAAGCCCAAGATCGCCTTTGAAACTGTAAGATGACAAAGTCCAACAGGAAGAGGGGGGGAAAATAGAAACTTACTTAAAACTCACAGTTGAATGCTACTTCTGTTTCCTACTAAACCCTAAATAGCCTTTTGTTGGGCAAAATTAACTTGACAGACACACTGTGGTTCGGAGTGTGAGGCCT-GGGGCAAGATAGGAAGGCTGAAGCAAAACAAAGAGGCAGTTACTGTGTTCTGTGAAGGAGCTGACCGGGGC-TGGGGATTGCCATCCTTGGAAAAGAAGAGAGAGAAAAGTTCCGGA-----TGTCTGAAGGGAGCAGAGATAGC---------------------GCTGGGACAGCCT--------------GGGGGTTGTGACCTTGAATTGCATGCCCATGTTAAACTCACTTGATAATGTTCTCCTGTCTTTTAAAGTCACCCTTCTGGCCATATTCCCCA-----AGTGTTTTACAAATTGAGAGTCCAAACTGAAATAAACAGTTTTAGCAAAATAAGTCATTTGTGTCAACAAACTACAGTATTACTGTTGAATCAGGAATGCAGGGGCATAAGAGAGTAGCACTGCTCAATCCATGTTCTCACTGACCTTTTATAGCT-----GAGCGAGCGAGAGAGGTCTTTCATACAAGGCTGGGCCTCACTCGTAAATAA--------ACAGGGAAGAGAGTGAA
s HiC_scaffold_1 129690765 3514 + 233722169 AAGGATTGAAGGGAGAAAGAAGTcatgtatgtttgtatgtatgtttaCAGGAGCCAAAAACTTCATGCACTCCTGTGAAAGATCAATAGGTAGTATTTAAAATTGGGAAGTCACAGTGTAGTTGCACAGTAGTATTTAGAAAAGCATTGACAACATAGTGGCCCTTAGTATGTGAACTGATGAGCA-AGAAACTAGTtgccattttttgtttgtgtat--gtaGGGC--TTTGAGAGTTGACTGccttttgaaactgtattttcatattgctttgctttgtg------tttgtaaaaaacaatttttattaattCCATTTGACCACCCTAAATCTCTCCGACTCCACCTCAGCTCGGTGATGCCCC-----TCACTC-------TGTACCCAAATAATCTGAAATGGAGCTA-----------------------------------------------------------------TTATGCACGCTCACGTTTCCCAGAAAGTTAAGAATTTATTCCCCCTGTGGTGCTTCTGTTT-CAATTCTGAGCACAGCAAAGACATGTTACATAACTCGGAGTTTCAACAAACACCTGGAAATCAGGCTGTATGTATCGCTCAGATGAGACCAGACATGAAGAGATTGGTAGTGACAAGTGTTGTCACTTCTCTCTCTGACAGCAGGCAAGTGGCAAGCTGTATATACAAGGTCTGATACCACACTctcaagatgaga-----aaaaaaaaaaagcaagtga------------aaaataacatttcagcAAGAGCTTTCTTGGAAAATAATGGCAAATTACACATGATTTAGCCTTGCTCTTAGCTTTTATAAAGACCCAAGAACTACTATGAACTGAGCAGTTGAGTCCTAATTAAGTCTCCTCTTGATCATCTGCATTGCATACTCA-TTCTctagctacattttaaaaaagcagcataTCGGCCTCTATTTCAACTGTTGTTTTCCTGcctgcttgttttttattttccatttttttcttgaataaaag-GAGGTTAATGTGACTcattaagaattaaaaaacaattacaaaatgaaaagaatagttCAGATGAATTTTAATTAGAGCCTAATTTAATGCGATTTGAACTCAGCACACCGGAAATATATAGCAGTAACTTTAGCCATTAAATTGCATGGCCTTTGATTAAACTCAGTGGGAATTTAGCGGGATTATTTTGGCTGCTTGAAGACACCATGTTTTTTCCATTAGTGCCAGAGAAATATATTGAGGGACTAaaatattactaataaaaataaatgtgaaagttGTAAATTTCAAACAATATAAGACCCATAGTTCATACCTGAATTTCCAAATGGGTATGTGACATTTCATTAAGCTTAAAGCTGAAGACACACTGTATTATGTCTGACCTCTCTAAAAAAAGAGCCTAAATATTTCCACAATTTATCATCCATTGGAATCTAACAATAATAAATCTGAGAATGTGAAAGAGTCTCTCCTAAGCTAAGAGAAAGCCTT---CATATACAGGCCCTGGCTAGGGTCAGACGTGAGGCAGCGCTGTGGTCTCCCAGCATCCCTGGTCA-----CTGCCTTTCAGTGGGTGgcttttcatctgcaaaatgggaacaGTAGAACACACGGGTTTGCATGGGAGACAGTGTGGTTAA-----CTAACTAAAATCAACACCTACATCACAATTTTCCAGCAGTGGTAATACACACTGAGAGAGAGGCAGAATTCCCtgtgggacttgaactcattatctCAGAAATAAGTGATTCCGAGTTAAACCACTAAGCTGCATGGCCTGGCAAGGAGCCCCTCCCTGCCTTTGATAGCAGCTCAGTCAGCCACCGGAGGGAGCTAATAGGACTCT--CAGTAGAGCTGAGTGTGATGCACGGGTagagaaagataattttaaaatggcatGTAAGGATGACAGAATTTGAACAaaatcccttttatttatttatgccaaAATCTGTGTGAATGTAAAATGTCATCTCAATCATGCTTTATTTATGGTGtggctttt-tcttaaaaaaaaaaaa-----------aaaaaaaaaaggaaagcaagaaataagCATGTTGGCTGGGAGCTAGCCCACAGCTAGACTGGTTCCCAGTGGCAGCAAGTGACTGGAGCTGGAGCTCGCAAGGTATGGGACAGGTGTCGGCACCCGCCTGACCTGCCGCAGCCAGGAGCCCTGGCCCTGCTCGCCTGTCCTGATCGGGGCAGGTTTTAAAAGGCTTTCCTTGTCATTTAGGGCAGCTAGAAATCATGCCTGGGCT-TCTCCATGAATAGAGGGATGTGCAATATGTAAAATTCCTAAAGACAATTTT-ATTTATAGCTGTTGCAAACAATGTTTATACAAAGTTTATTAAATATGTCACCCACATTGATTTATTCCAACCAGTCTCTTCAATCACTAATATTTATGTGATGGGTTCAGTTGCAACAATTATTTTATATGCTGTAGAGTATGTTATAACTAGGGATTCACCCTGGCAATTATATCAAAGATAAAATGCTTCCCAAAGACCTGTGGGCAAACCAGGAAGTATATTATTGGACACGAGGTGGTTTAAACTGAATACCACAGCACTAAATTTAGAGCAAAGAATGCGGAGCATcctatacttaaaaattaaagc-agTTTGATATCCTTTGTGACGTTCCCTCATTTCTGGGAAGGTAGTAA--GCTTTTGTGCACATTCTCTTTTGCATATCCAAGCCTTGGTCCTGGAAATGCTTTCCTTGTATTCTCTGTGAATTTTTGTTGGCTCTTATTCCTCAGCAGCATTTATCTGGTGCCCAAAGTGGGAAGAAGAGCCTACTTCGGCATTTACAAACACCTACAAAGGAAACTAGACACATGTTACTTGCGGTAAGGAACTGGCATCTGCTGT-GAGTGGTGGAAGTATTGttaac---aaagaaacaagagtTCTCTAAAAAGCCCAAGGTAACCACTGAAACTATAAGAAGACAAATTCAACC-----GAGTggaaaaaaatg-------acttaaaac-CACAATTGAATGCAACTTCTGTTTTC----AAAGACTAAATAGCCTTTTGTTTGGCAAAACGAAGTTGACAGACCCACTTTGGTTCAGAGAGCAAGGCCTCAGGGCATGGCATGAAAGTAGCAG------AAAGAGGTAGCTCATGTCTTCTGCAAAAGAAGCCATCAGTGCTTAGGGGCTAAAGTTCACTGTAGACAGGAGAGGGGAAGACTCTGGGGGGATTATCAGAAGGGAAAAGAGTGAGCAGCCAGTAGGGGAGGGTGATGACCGGgaaattctgtgttccataaaGGGGGAACAATGTGCTTTAAGCCCAGGTGCCTGTGATGTGCAGTTGAACATGTTTTGCTTTCTGTTACTAGCAAACTTTTG--CCTTGTCCCCAGTTTCAGTGCTTTGGAAGGGAAAAGTCCAGCTGGAAGTAGGCTGTATTGGTAAAATACATAATGATCGTTGATAAA------TATTTTGGTTGTGTCAGAAATTTGGACCCAAAGGTAAACAGAAGTATTTGATCCAGACTCACTTGGAC--TCCATAACTCTCTAAAGAGACTGGGAGGGAAC-----TAAGAGCTCAGGgctccttttaaaataatttaaatctcaGGGCACAAAATGAA

a score=120920
s chr3           143511806 4517 + 160039680 [encoded data, 5150 characters]
s HiC_scaffold_1 129694902 4939 + 233722169 [encoded data, 5150 characters]

a score=44213
s chr3           143516878 1874 + 160039680 CTGTTGCACTCATCAACTTCATGGAACACACCCACTACGGTGGGCAGCAAATACCT-CTGTGAACATA-TATTTAGAACAGAGAGATGAGTTATCTGAAACAGGTGTGGGTAAAGTACCTGTAATGAGGAAAGAGTAGCAAGGAGTGATGATCATAAG----GTAGAGTTCTACAGACACAGCCAATGAAATGGTTAATGAATTAGAAGATCAGACTGA--------CCCTGATGGCAA-AGGAAAGAATGATGAAGT-GCTACTCAGAAAAGCAAAGTGAAGTGGAGGACAGACCTGTTATTATCT----AAAGTCCCAGGAGAAAAGAAAAAAGTACAAAGAACTATT--GAGAAACAATGAGGAGAAATGTCCCATCTGTTTTTAAAAGTGGAAGACACAA-CATGAGTAATTAT--AGAAAATCAAACAAGAGAGATAAAGAAAACCTTACGTGGGGAGTAAATAATTCAGACA----AAAAGTACATTCTACTCCCCACAAGACAAGAAGAGCCACTCCCTTGTCATCAGAGAGAGGCTGGGATGGGCAGCAGATTCCGTCATGGTTGCTTTGGAAGAAAACAAAAACATAATGTTAAGTAGTAAAGGAAAAAAGTAACTTTGGAA----AAAAATT--AATTATAATGATGTTTTCTGGGGCATTGCTT-TAATAACAAAATGT----AATAACAAAGTGAT--------TTACATGGCA------GATTGGCACTCGTAATTTTCAAGAACAGATCTACAAGACCACACACAAAGACATCTGTAATAAAAACATTA-----------GCCGAGATTCTGCACAGAAGCAGGGTGGGTTTGCATGTTTATTTAAGTGCAAAGGTTGAGAGCAAATAAAGCAATGTTTTAGCTTTTCTTTC-------------------------------------------------------------------------------------------------AGGGACTCTG----------------------------AATAGTACT--------------------TTTGCATTTTCTATCATCCCTATCTTCCCTATTTGTTGCCCATTTTCTTTGGTGGGCAAACAATTATATTTAGTAAGTATATGTCTTCTTTACTTCAAGGAGA----AGCTACTAATTGGGAGTAATGTCAGGCCCTGGGAAGATCCTGCGGAGAGCTTGGTGAGGCATCATAACTCTG---CCTAATACAGTGTCAAGAGGATGAATCCAGAAGGCTCTATTGCATTGGAAGTCAAGAAAAATGACCAGGAACCTATTAGCAACCAGGCAGG-------CCAAGGGTGTCTCTGAAGTTTCTAGCTTCTCTGCCCTGTGAATTATCAGTTCCTAAATTTAGTCTTGAAAACGCTGTTCTTTCTTCCCTTCTGGAGGGATATTGTGATACAAAAGGCAGATATTTATACCGTGCATTCGGTGGCCCTGCCTCGGAAGGCACTTCTGA-GCCCATTTGTAGATTTGTTCCTGAGCCCTCATGGAGAGCCACAGATATTTTATTTTCAAGAAAAACCATATTCTACAAATTTTTACCCCACCTGTGCCATTAAGCAAAAGCCACTCTGCTTTATTCACCACTAACCTCTGCCTGAGTTCTTTTGAATACAGGTTCAAAGGCATAGTCCATGAATATAGCTTTTTCCCATGTGTGTTGAAACCTGCTGGTAAAAGTATGTGTTATTTCATACTCCTATGGAAAAAATGGACCAAGGCTAGACAATTCACAATAGAACATGGAAGCAAAATCTGTATGAAAAAGTGCTCAACT----CATAAAAAGCAAATCTAGTTCTAAAATGCC---AAGTACTCATCTATAAAGATGGCACATGGTCTTGTAAGGACATTGGTGAGATAAATATCTTCCCATAGGGCCAGAACACTGTCATGAAGCTGTCATCACAAAGGACACAGGAAACAAAAACTATCCTTTTCTTCCAGACC---ATATTGGTAGAATTCTACACTACAGTAATAACTAGGGCTGTACGTAAGGATTCATTGATATTTAAAGATAAACA---GTAAGAGAGTGACCAA
s HiC_scaffold_1 129699849 2028 + 233722169 CTGTGACATTCAACACCTTT-CAGGACTTATACGTGACACTGAACAGTATGCATTTTCTgcacacaaaatttttaaaattgatggatGGGTAATTTAAGGTAAGCATGGAAAATGT----GTAATTGGAAAACAGTAgttagaa-taataaaaatgagcTACATAGAGTCATACAGCT-----CAAGAAAAAACCTAATGAGCTGGAGGAACAGATTGGGAAGCTCTCCCAGAAGACATTAGGAAAGAATGAAgagggaggaaaacagaaaagcaaacactTATGGAGGATGGAAGTGCCATTATCTGGATAtagtctcagaaagaaaaagaaaaatgggaggaACTATATAAAGAAATGATAGAGAAAACTGTCTCAGTGGGTTTGAACAGTGAAAGACCCAAGCATGAGAAGGTTTTAAGCAACATGAACAAGAGAGACGAGGAAA-CctcacacaataaataaataaagaagaaagaagaaaagtaaattcCACGATCACCCAGA---AAAGAGTGGTTCACTTA----CAGAGAAAGAGGAGTGAGATTAATAGGTTTATCTGTAATT--tatggaagaaaacaataaagtaatatt-----------------------tttgaaatcttaaaagttttaattAGAAAGTCCTTCACTTTGACATTGTTTGTGGTAACAAAGTATTGCTCATGATCAAGTATTCCAGCCAATGACATGTCATCAACCACTTAAAAATTCTAATTCTGAAAAATA---CTCAAAGACCTAA----AAAATATTTGCAGCAAAAATATTGCTCTGTGAGATACAGATATTATGCACATGTTAAGAATGA--TTCCACTTTTACT-AAGTGTAAAGACTCAAAGAATATACGTAGAtactttaacttttctttcttttggaggctggcctcgaacttgcttatgtagcccaggttgacctgaAGCTCTCAGCCATCCTCCTAACTCAGTCTCCTGCGTTCTGGGACCATAGAGATGCTctaccacacctggtttatcTTTTATGTATGAGATAGGATTACATACACAATTATTTTCGTTTTGTATTTTCTACCATCCATATTTTCTCT----GATGAACTTTTACTATTTGTAACaca-aattataattaatatatatagtTCTTCTAGAACTCAAAGCCAGGATAGATACTA-TTGGAAACAATTTTAGACA-TGGAGAGCTGCTACAAAGGTCGAGATGGGGTGTCACAAGGCTGGAGTTACATCCGTGGCAAAGGGGATAGATCCAGGAGGCTCTATTGCATTGACACCCAAGAAAAGTGAACAGGAATGGGATAGCAGTTGGATAGGGACATGTCTAAGA---TCAGTGAAGTTTCTAGCTTCTCTCATATGTGA-CTATCAGTTGCTGAATTTAGACGTTAAA--GCTATTTAGCTAACTTGTCTAAAAAAGTGTTCTTACACAAAAGGCAGATATTTATATTATGTATCCAGCAGCTCCTTCTATGAAAGCACTTTTGAAGCCCATTTGTAGGTATG--------CCTACATTGCGAGccacagatattttattttcaagaaaaac-atGTTCTACAAACTCTTTCCCCACCTGTGTCATTAAGCAAAAGCAATT--GCTTTATTCGCCACTAACCTCTGCCTGAGTTCTTTTGAATGCAGGTTCAAAGGCATATTCCATGAATATATCTTTTTCCCATGTGTGGTGAAACCTGCTGGCAAAA-TATGTGTTATTTCCTACTCCTATGG-AAAAGTGGGCCAAGAATAGACAATACACAATAGAAAATAAGCACAGAtacccattttaaaaatgttcaactatcctgtaaaaattaaatctaattttaaaatgacaaaaaatgctctttcagaaagataatgCACAGTAGTGGTTGGATATTACTGAGATGAACATTTTCTCACAGGATTAGCACACATCTAAAAAGTCTTTGATATATCAACAACATTAAGACtaacttttgcttttcttccaaCTCCGAATTCTTCTAAAAATCTATGTTAAGAAAATAATTGAAGAGGTACTTAAGAAT---TTAATATTT-GAGATAAATAACCATAAGATAATAGACAA

a score=32975
s chr3           143519753 1623 + 160039680 atatatatatatatatatatatatatatatatGAAAATCAATTCTGTAATT-AAAAACATTAGCACATAGCCAGACTTAGCTGTTTATTTAGCTAGAAAGTTGCCTAGGAATTGCAGACCACGTGGTCAATATTTACGAGTAAACACAAATC-----------AGAGTTGAAAAAAACTGGGAAATGCT-----TCAGTAAGAGCCTCATTTCACTGGTCAGCCTCGTGAGCATTTTCTTTCAATGAGAAGTCA-TCATAGCTCTCAGAATTAAGAGCTAAGAGAATTAAATGATTTGACCATTGATATGAGTGGTTAACTGGCGAGGTCGCTGTGAAGGGACAAGGCATTCAGAAAGGAATCTATTTTAGTAATCTAGGGATGGAGTGGC---TAGCCCCTGAGCTAAGACTGTGGGGT----TGGAATGCAGATGGGGTTCGGGAAGATATTTAAAAGG---GATTGATGAAGTAGAGTCAGATCAATTATAGTAAAAAGGACATAAATATACCTTCGTT---------TTCTAGATTAGGTAGCTGGGGACGGTGGTGGCGGTGCCAGAGATTAGCTAGGCAGGGTTCTGCC----GGTCTTGCCGGGTTGTGCCTTTACTAA--ATGACTCCTCTGATGAATTGCTCTGTTTTCTCTCTCTGAGGACCCGAGTTTGGATTCATA--TGTT--AGTTTCATGCAGTTT-GAGGAAATTTAACAGAAATCACAGACCCATAAAATGGAGCTAGCTTAAACCTGCCTG-----------------TTCTGTGTC--------------CCTTTCATCCAGC-CATCACATGTAAACCAAGAACG--GAGAATTGCTCCTAGATTAACGGAAGGATTTTTAAATTTTCTA-CTTTCTATCAGAGACTAATTCTATGTGATTTAGTGGAAAGGTGGAAGATATTTCTGGTCCAGTCACCAGCTTTAATTAGTTGTTTTTCAACCAATATATTTTCTTCCTTTCTTTGGGCTCCATATG---TTCTCCGCTGAGATAGGAATTTATGCCTTCGCGGAGACATAGTAACCAAGCGCAACCATAGAGC--TTGCTTTTCGGTA-------------GACATCACATGTGCGTGAGAGGGCG--CTTGGGAGAAAGAAACTGGCATCAGCTGAGGAGAG--AAGAGTGCATCCTTCAG--TTATTAAAGTTCCCTCAGTTTCTCGTGCCTCAGCATTTAGTCATCCTTAAAAGTCTAAGACTCTAGCCTCCACTTAGTGTTTATGCTGACGGACTAGTGCAAGAGTATTGCTGCTGCTGTGTGTATGTGT--------GTGTGTATTAAATCGTTGTTTATATATTAATAATATGTTTACTTATTAGTTTATTTCATTGCAATATTTAAAATACCTTAT--------AGTAAAC-AAGACTTTGTCTTACATAGCTTATGCTT--TTTAACCCAATTTTACCTTTTGAAGTCAGGTCCCCATCTTGTACATTAGTCCTTTAATTTCTAAGATTTT----AGTATTTTCTTCTCCTTTCCTCTTAACAAGGACTAATGGCTCTTTTTAAAAAAAATCCTTttttgttttgttttgttttgttttgttttCCCTGAATGTATGGTGGTTTAGTTTATATGCCTCTATTTTTAAAAATAAGTTTAT-------TTAAGCTATGAACACAAGAGCATTCATAACAAATTTCAAACTCAATAAAAAGCTATTCAAAGCACATTTTAgaga
s HiC_scaffold_1 129703111 1685 + 233722169 ACAGATATAAGAAGATGGATCAGCACAGTTATTAAAATCAATTCAGTAATTTAGGAAAATTACCACACAGCcatatttacatgtttatttaACTGCAAGTTTGTCTAGAAATTGCACAACATTTAGTCAAGATTTACTGAGAAACAGAAATCCATAGCATGTCAGAGGTGAAAGGTATTGAGAAATAATATAGTCAAGTGAAATCTGTATTTTACAGGTGGACTTTGTGGAACTGTACTTTGATTGGGAAGCTACTGATGGTTCTCCAAAGCAATAA-TGAGACGAATAGATGATTTATCCAATAATGTGGATGGATGATAGGGAATGTAATAGTTAAGGAACAGAAC-TTCCTAATAGAAGACATTTTGCACATCTAGGGATAAAGTAACAATGAAACCCTGA------ATTGTAGTGTAGTCTGGAAACCAGAAGAGATTTTGTAAAGAATGTAGGAAGTGTAATTTATATAATAGAATCAAATTCATTGTTGTTACAAGAAAATAGAGGT---TTCATTATAAGTGAGTTTTTGATTAGGTAACTGCAGAAGGCAATGATATTATCTGAGATAAGCTATCAAACATTTGTCCATAAGCTCAGCACAAAATGAACTTCTGCTAATTATCACTGACTCATTAgactacttttctatttttttctgaa---cttAATTTGACCTCATGAGTGTTTAAGTTTCACATAATTTTGAGGAACTTAAGAAAAGATATAAGACATGCATATTGGACTT----TAAAGATGTCTGAATGCAATTTAACCATATTCTGTGCTAAACATGTTTATGATTTTTGGTCTGGGGCATTGCTTTTACagcaaaaacactaaaaataactGCTAGAGAAATACagctatttttaagttttctttctgtCCATTAGAAACTAATTTGAAGTGTTTTAGTGTAAAGGTAGAAGATATTTCTGGTTCATTCACCAGCTCTAATTAGTCGTTTTTAAaccaatatattttctttctttctctgggcTCCATATGCTCTTCTCCACTGAGATATGAATTGATGTCCTCACTGAGACACGGTAAACAGGCATATTTATATAGCATATGCTTTTTTGCAAGTGTGTTCTACTGGCATCAC-CATACATAAGAGAATGATctttggaaacagaaaattaCAAAAGGAAGGGATGGTTAAAAATGCATActtctgttttattaaaattcttaCAGGGTCAACCACCTCATTACTTGACCAAATTTAAATGTGTTAGACTCTAGCTTTTACC---------------------------ACACTCTCACTGAGGCCTTCTTTGAATGCCCCACAAAGGGGCTATTTGTTC--Tgcaaatacatt-ataaaatgtttaatttgctGTGAATGTT-TTTTGATGATTAAAATGCTTCATTGCTTGTCAGTAAGCTGAAACTGTTCTCCATGTAGCTTATTTTTGACTGACCCCAGTTCTACCTTGCGAAGCCCAGTCTCCGCTTTATCTGCGAGGTCTTTAACTACTCAGGTCTTTCACAGTGTCTTCTTCTTCATTCCTTTC--------CCATTCCCTTACTGTGA--------CTCCATTCCTTTGTTACG--CTGGTTGTTCTTTTCTGAATGTGCAATAGATTTTCCCACATCTCTGGATTT-------TAAGTCAATGCTGCTGTTAAGCTATGAAAACAAAAGCCTTCTTTACAATTTCTGTATTTGATAAACAACTATCAAAAACATACCTTAAAGA

a score=30244
s chr3           143525052 2932 + 160039680 TTCTATGCCATTCAGATCCAGCCATTTGTAGAATCCAGTTTTCCACACTTCAGGGTTTTCTTTCCTTTTTTGTCCTGTGTGTTA------ATCTTTTCTGTTTTCTTGAATTTGGATAGAAAACTTTCTAGTTGGTCTCTGAGTTTGAGGACAAC--------CAGGGTTAGATTCCA-TGTGCAGAGCAGGTTAACACACT--CCTGAGACCCAATGCTTTAG-AAGTCTAAAGGGCAAACGAGGAGTTGTTGGCTTTGGG-TACATCATATTTATTCATTTCTTCCTTCATGTCCTGTAGTTGGTTATTTTTTGTTTGTTTCTCTGACTTTCTTTTTGTATGGAGTC-AATTTGAAGAATAATAAGAAGAGTTATTAACAGCTCAACAAGTTAACTGGGAACTTACCAGCTCATGGAACATGGGAACAACCAGAAACTTTTGACAGGACAATTTTTTTTTCTAGTGCATTTGCCTTTTTAAAAAAATGAGCATTTTCCCAGAGGAAATTTGTGATAATGGCATAGAAGCAAGAACAAGCAGAGTCAATTGCTCAAATGGTCTGTTTGATGGGACATTTAAGGGGGGGAAAAGAGTAAAGCAACGTGCTGGGTTCCTTAGTCCTGACCCATTAGAGGGG--GCTGGCACAGTTCCCTCCACAGCTACAATACTAGTCTCTCCATAATGGATGCACACCATGCACCTCTTTTAGATACATGCATTCT-TCTGTAGAGCTGTGTTAATTATTGGTTATTCAAAT-CCCAAAGGAGAAATTTCCTTGAGTGTAAACTTTTGAAAACCTTG---CTAATTTCCCATCAT---TTTTTATCAGGAAATGTAATAAAT--AGGGTGAAGTTGA---------ATAATTGCATAGTGAATTCTATTGTGTATTTTAAATCGATATTTCATCGTATGTATTAAAAATATCATCTGCAGTTGCTAATTCGGTCATACAAATATTAACCCTTTCATTGCATTCATTGAAA----------------------AGGCTC--ACACGTCAGTGCCTTCCTACATACTTCCCTGTATGTGGCATTGACAGAAGTCAATAGTTTTGGCACATTTTGATGTAAAATTACTGTAAGAAGGTAATGCATGGATCTTTTCTTTGTGGGGGCGGGGGTGGCTTtttgtttgtttgtttgttagtttgtttcgagacagggtttctctgtatagccctggctgtcctggaactcactccatagaccaggctggcctcgaactcagaaattcgcctgcctctgcctcccaagtgctgggattaaaggcgtagaccaccacgcctggcCAGTGCATGGATCTTAAATTCAAAAACACTTCCTGATTTTTTTAACTTTCTCTGCGCACTTGTAACCTTTATTGAAAATCAGAC------CATCACAAAATT---CTATGGACTTGCCAGTTACTTCCTACATTTGTGATCCAAGAGCTGAAGTTGCTCTTGGGATATTCATTGCAT----TTTCTTCCTTTGTTTTAAATCTTGAGGTATGAGAATCTGCCAAACTTG----TCCCCGTCTGTTAGATGTCTTCTGTGT-----GGTGTAttttaatattcatctatgttgcatgtctcagtaacttgctttc-taaattgctaa-gcagtattttatgaaaatgccacattgactatattct---atttgtgtatacctggttattttcaacctttggctattctgaataaatctAAAATCCAATCCTGtaatatattggtaagcattttagcatatctattcatgggggaaattgacctgcaactgtcttttgttttagaatctttgtta----aatggtacgagtgtactggccttactactgactgagttggtaatccttctgctactgtatatatttcataaaatttcttcctatatgtttgattgagt--aaaattgaagccatcaagactaggggtgttcttttggagaaatcatttgattgttgcttcaatttatttatcaggcataagatgattcttattttcA----TTGTTTTATGGAAATATGAGAAAACTGCAACCTCCTTGGTTCATGTGTTC----AGGCCTTTTCTGCTCTA--TACGTTTTTCAATCTGTTAGGTCAAGTTATTCTTTTAGTAATTTCCATTTTACAT-------TACTCTTTTTGTAGATTTTTAGTAATTATTATATAGAATATTATATATGTGTGTGTGTGTGTGTGCATACACATGAGAGTGAGACTAAGATTAATATTGAGTCATTTCACATGGAATTCACAAAGCTTCCAGGGGTAAGATAATACTTtgtgtgtatgtgtgtaggggtgttcatgtgctatatgtgtgtctgtatatgtgCACACATTCCTTTCTTGTCCTACCTCAATGTCCTTATCATCTATTTGGATtctatatacaaccaaaaccacagagacattgctacagt-tgtgctttgagtagtctcaagaattttacagacattcagagggaaaaagagagttgcttatctttaacccacattttcagtctc--tagtgcacttc--cctttttggaagatagacttttcagtcacctg-------catttcttctcagccttggagtttctgtccacaattctgttcctttatgtctgctggctactgactttcttGTATACTTTTCACCCAAGACTGCAGTTTTACT------------AATGTTTGTTTGCAAAAAGCTTGTTTGACAT------GGTTTGGTTTTTTTTTTTTTTAACTTTAACACCTTTATGGTATTTGGTCTCTATTTTATGGTCCCTAGCTTCTCATAAG--------ACAATGATTTTGTTTT-TATCATTTCCAAACAATATTGGGgtttttttgttttgttttgtttgtttgtttgtttgtttgtttgtttgtAACATTCAACATATTTCTCTTCCTTTGGTTCTATGCAGTTCTGTCTGCCTATGCCCTGGTA------GCTTCATTTCTTTCTCTTTGCTGATCTTAGAGGTTTTTACATCTTCAGTTTTACTTCTTTTCACCCATTTTGTAAAACGT--GTTATTATGT
s HiC_scaffold_1 129709562 2603 + 233722169 TTCTATG--GTCTAATTATAATCATGTTAATAATTCACACTTTTATattgcaaa------tttcttttttt----tataagttACATCTGACATTTTCTGTTGACTTATCTTTGGTTAGAAAGATTTGTATTTAGTCCATGGATTTGAAGCCAGCGAGGATGTAAGGATTAGACTCTACTCTGTGCAATAGACCGAGATACTGGCAGGGTACCCAACTCCTCATTGAACCAAGAGAGCAGCAGAGGCCTAA--GGCTTTGTCCTACATCATACTTACTCATCCCTTTGTTGATTTACtttatttgttggttt---atttatttCCCCAATCAATTTTTGTAATGAAGTCCAATTTGGAGAATAAGAGGAAGAGCTGTTTGCAGCTTATCAAGTTGATTGGTGGCTTGGAAGCACATGAAACAGGGAAAGAACCAGAAACGTTGGGCAAAACA-----TCTTCCTGGTATGTTTAC----------AAATGACTGTTTGCTCAGAGGAAATC--TGGCACTGATACAGAAGT-AGAATGTTCTGAATCTGTGGCTTAAATTGTCTACTTTATGAAagatttaaggggaaaaaatcaaaaaaagtatGACCCAAAGTTCTTAGTCTAAACACATCAGAAAAGATGCTTA-AAACTTCCTTCCAGAAGTGGAATACCA---TTTTTATGTTGAATGTG------GTTTCTTTTTCAAAtggtttcaaaataattttaagattatcTTGATTGCTGATCCTTGAAATGGCTAAAGGAGACATTATTCACAGTGTAAG---GTAAAGAACTCGAAACCATTTTTtcatcattcatttttattatgaaaaattataaatacaaggTAAATTTAAAAGGCATGCACAGTAACAAAGTAAA----GGTGTATGCCTCAGGTTGAcactttattg-atttttaacaAATAGCATATACAGT-----AGTCACCCTCATAAATACCCaccatttcattttacttttttaaaaattatagattttGAGACATGTAGGTTTCAATACATTGTAGATTTCAAAAACACTTTACCATCCTTACCAATAATTAACATTGAATATTTGTGTGCTTTTCAATGTAAAATTTATGT-AGAAAGAAATGCCTAAATCT------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGGTTAAA------------CACATCTGGTAGATG------------------------------------TTGACAGATTCTGTGTAACTGAAGACCTAggtgaaatacagaatatcagcATCAGAAACTTATATTATAGACTTTGCAATTCGTCTCTCCCTTTACGTcctcaaagaaaaaa------ttcagatatTCATCATAgatgatttttgatttttttttaggaagTCAGATAAAAGGAACCACCCACTTCGGATTCTTTCATGTATCGCACTTTTACTTCATCATAAGGTG---TTTGATATTCATTCATGTTGTACAATTTCATCATTTGTTCACTTTAATTGCTAACGTTATATTGTATAGATAGGTCATAGTTGATTTGTTCTTCAGTTTATGCCTACCTAGCTATTTTCAATACTTGGTTATTATGAGT--ATCTAAAAATTGATTGGATTGTatttagttaaatatttt--tatgtatgcccATGAAGGACATTAATCTG----TACTTTTTTCTGTAATATCTTTGTCAAATCAATAATGGGGTTGTGCT-------------AATGAGTTA-----------------GTatacattttgtattattt-ttcttgcatATTTAATAGAATTCAAAGGTAAA---ATCAAGTTCTGGAGT-TATATTTGGGGAAGGCTTTTGATACTCTGTTCAACTTATTCATTAGACTTAAAATTATTaagattttcaatttttgttttgtt--agttttggtAGGTTG----------ACTCCATATAATCTCcagaaatttttctattttatgtaaattttcaaatttgttgaCTAaagttactt--------attttctttttagatgtAACTCTGCCCTTTCAGTAGCTCc-------------taaagaataaaacagatctgCTTGATTTT-------------TCAGAGTGAGCATAGTATTTACATTGTAACATTTCACATCAAATTCTGAAAGC-------------------------------------------------GTGCAAC-----TGTCTGTACTCTAGACCACGTACTTATCT--TCTTGCCAAGGTG-----------TATTTTGTTCATAAACACATTTAAACACcaagagaaaattttataatgtttgCTTTGAATAGTGCtatgaattttaaggaaattaagagaaaaatagaaa-----taattttttccctttatttgccGTGTTCATAATGGTCTTCATCCTTTCTG-------AGTTTGTAAGCTACCAACTGGTGTCATTTGTCTTCAACCTCACAACTTCCTTTAGcaattcttttaatttatatcttCTGGTGACAGATTCTCTTGTATTCCTCTCATCTGCAAATGTATTTTCCCTACATTCTAGAAGAATATT--ATTACAAGAACCTTCATTGgcatttttaatgtttgatttttgcttttgccaCTTTGAATTTCTCTG-----------CTGTCTTTTAGACTCCAAGGTTGCTGATAAGCAAATAGCAAAACGATTTACTTTTCTACTCTCTGtagacaata---------ttttatttttctttggttatttagatttt----------------------------tttctttttctttggttttgtgtaGTTTTATCTG-TTATGCCTAGGTATGGTTCtccacatttttttccatttgaatgtTTCTATggttcataaatttttaaaattatgtcttttactcaactttgaaaaattttagtaATTATGT

a score=161007
s chr3           143532515 6637 + 160039680 [encoded data, 7328 characters]
s HiC_scaffold_1 129715500 6732 + 233722169 [encoded data, 7328 characters]

a score=8715
s chr3           143540588 648 + 160039680 CAGCCAACCATCTGAGATTGCAGCACATACACTTAGTGGGAGATAAAGCTCAAGAAACATTTTGGAGTCTGATTTTGGACATTTTGAGAATGATCACATATGACACACTTGAAAGCAATCTTGGATGATGTATTAAGGGTTTAATTTTAAGTAATATCCACAAATCTCAGAGATTAAATCAATATTGAGAATAGGAATATAGCTCCTTTAACTTCTTTCTTTCTCTCCTCCTGAATCTTCTTTCTTTTCATTATTTTACTACCAAAATCTAAGTGCAGGATATAATTAAATATTGAGACATTGAGAAAGATTATGTCTGGGTCAAATTGTCCAATCTAGTAGTGTAGTTTCCTTAGGGCCATCTTGTCTCTGTTTCACTAGAAATGGCATTCTCAGCATCTCTTCCTTCACACATGTGGATTTCCAGATCAGAGGCTTGTCTTTCCC----------ACATTCCCTCTCAGTTCTCTCCATC----------TAATTACTGGGACAACTCTCTGTCTTTCATGCCATATCACACAACTGAATATTGGTATGACCTCTTAAAATATCACATAGTGACGGTTATGTGTGAAGAAGAGTTTTATGAAGGGGGCTCGGTTG------------------------TCAGTG-AAGGTGGGTAAGTCACAGTGTGCTG-----TGGTCCACTTATAAAAGAAC
s HiC_scaffold_1 129722239 561 + 233722169 CAGCCAATGGCTTGA-ATTATAACACATATACTTATTGAGAAATACAGCTCAAGAGACATTTTTG----------TAGCCAGTTGGAGATGGATTG-------------TGCAAATACTGTTGCATGATATGTTGAGGCTTTGCTTTTAGAGAA-GTTATCAAATATCAGAGACTAAATCAATGTTAGAAATTAGAACATAGCTCCACTGCTCTCTTTTTCCCCCTCCACCTG-----------------------------------CTAA-------------------------------------------------------TCCCCAGTCCA-------------CTTCAATCTCCCTTGTTCCTGTTCCACTGGGGTTGGGAAACTTAGTCTCCCCT-CTGCACACTTCTGAATGAACTTAGCA--------TCGTTCCCCTAGACATTGATGTTTCTGCTAAGTTTTAACCATTTCTTGGCATGTAATCACCTATGcaactgtttatttttcatgttctgctatgctactgaatattAATGTAAGCTCCCCAAATGCTACCTATTGAATGTGGCATATGTAGCAAATTTGATTGAGGGATTTTCCTCTGGAGAGGAAAGCTGAGATCATGGAATGAGTGAAAGGTGTGTAGATGACATTACGCCGTCTCATAATCCACTTATGAAAGAAC

a score=58961
s chr3           143541513 2310 + 160039680 CAGTGGCTGTACCTTAATGAATCTTCTGTTTGTATTTA-------TTTCGCTATGACTATTACtagacacacgtata-cttaaaaatatatgcatttatttgtaagcatacactatatctatactttggcacagatatatacatgcttatgcatatgcacatgcatgcccaATGGTTTGAGTTTGCAAA-TAGTGA-ACATACTGACTTCATTTTGTAGCTCAAGCACCTGTATAAAATTCAGCTAAAG----AGTTTATGTTGTGGAAGTGGAAGAAGGTATTTCACAGAAGCTGGAAAAAGAAGACAGAACCTTCTTTGGCCTGTCCCTTTCCCCTTGTTCCATCACTTTGCAAA--TGCCTTGTAAACTATCAAAGCAAAGA--AATTCTACACATATCTATAAAGAGAAAATAATCTGCAAATGTTATATAAATAACTGCATACTGCAGTCATCAAACTGTTCATCTATATCTTCTTTGAAATCCCATTCACTCTAACAAAACCAGGAAGGGCCACTGGTTTTTAAAATGGCTCACAATGAacacaccacacacacacacacacacacacacacacacacacacacacacacacacCTTTCTTCACCTCACTATATCAGCCATTCTACAGTTTATGATGTGTGGGCTTCTTGAGGCCAGCATATTGTTAGCCTTTGTGTCTAAGGATATAGTACAGTTCCAGGATCAGGGTTCTGTGTGGCAAAAGAACACACCTGTCTCACACTGTGTACCATGACTGTGAGATGAAAGATGCCA-GGCTAATCTTCCTAGCAAAGAGCAGAAAGCTTTGCTTTAGGGGTTCTGATAATGTTATTTCTCCTCTTCAAACTCAGTTTGATAACCG--ACGAGTTATCAAATTAAATATAATGTTCTTCatttatttgataaattaaaattattttttCTTAGTGCTTAAAATTGTAGGTGCTTCATTGACATAACTAAGATGTTTGAAAGATTGGGATCTTAGACCTGTCAAATAATTAGTATGAAAATCATTGAGAAATTTGTATTATTTTAATATGTTTCAAATTAGAAATTAAAGAGAAAATGTGGCTATGA--AAGTAACGAGATTAAAACAATCTTGTAATCAAAATTGCAGCTTCTTTATTCTGCCATCTATATTAAGTAATGGAGAAAATGTGAAGATAATTATAAGAACAAGAGGTTTAATAGATTCTAAAATCACGGGGTTGAAAATTGCCTCCCAAGAT-CCCCTCTTGTGAGTAATTTGAATGAAATATGGCTCAGACTTGCTTTTGAATAAAGAAGATACAAAACAATCAGGTTCCTGGCCATTTGGAAAAAGAGTCTGGGCAA---------------GCCCCTCAGTCATG-GATGCTATCAGATAACCATTTTTAATGTGCTTTGAAAATCCTCGCTGCATTCATTTAAGAATTTTGTAATAGCATGAAAGTATTTGGCAAGAGAGCAACCGTGTGTCAGGCTAAGCAGGGTTGTTAGTGTTTTGCTTA-AGGAAACAGTGTTCTGTGGTGTGTTGTT-CCACGTGCTAGAAGCTTCCATTTGGTGAGTCAGAATGCACTTTACTGACTACAGCATAGCACACTGCTCTC----------------------------------------TCTTCATTGGTGTTTAGGGA-GGAACAGGCAAGTACTTCTTG--GGCACTTTTGAAGTAATCACAAGGAGTTTCTGAAATCTAAGCAGGGCTGTGGTGGACACTGTGTTTCTTTTACTGCTTTTTCTGAACCTATGCCATGG---------------------------------------AAAGAAAGAAAGAAATCTGTAAGTTTAAGA-----AGGTCACAGAAACGCTGGATTTTGTTTTCTGTACATGTGAAGGCAGAGTTATGC-TAGGAGTCAATACTTTAGAATCCATGCTTGCG---TGCAGAGTCGAAGAAGCTTCCAGGCAGA-CTTGTCACAAGTATCAGATGTAGACAAAATTCTAGAGAAGATTTAAACTCAGGCTTGATCAATTTAGAAGGGCAGCTCTTAGACAAGTTCTGCATATACCATTAAGTGTAGAACATATATAAAGTAATTGAGATTTATTGAGAAAAATGAGCTTAT--TTATGTGTATCTCATTCTCCAAAATAAATCTTTCCTTAAATTTATATGCTTAATTAAGTGCTTATCATTTGAGTTATTTAGACATTTGAGTTA---TGATTTTTGTTATA----TTAATTCATGTTAATTTTTGTATCATCCATAACATATCGATGTGCATGTGAGTGGGTGAATGCACGTGCATACACCCGGGAAAacacatgcatacagacacacacgcacgcacacacacacacacacacacacaATTTTTGATGTGT---TTTGGGACCATGTGCAAGTACCATTATTACTGTGAACTAT
s HiC_scaffold_1 129724092 2258 + 233722169 caagGTCTGAACTTCAGTG-------TGTTTGTACATAGCCTATCTGTCTGTGTGCCTATTATTAGAGGTGAacttagtttaaaaatatatatat------------acacactacaTATACACACTGACAT--------------TTATGTACA--------------CAACAGTCTGAATTTGCAAAATAGAGACACACAGTCATTCCTTCTTGCAGCACAATCATGTATATAAAATTTAGCCAAAGGCAGAGCTTTTCTTGTGAAA-TAGGGGCAGATGTTCAAGAGAAAGTAGAAGAGGAAAATAGAACCTAACTTGGCCTGCATCTAGCCC-TTGGAGCAGCTTTCTATAAACATGCTGTGCAAAATACTGAAGTAGGGGGGAATTGTCCCTAGATCTATGTAGAATAAGCATGCCTCAAAG--TGTTTTAATAACT--CTCCTGAATTTATTAGAATATACCTTGATATCTGCTTCGAAATCCTATTCATTCTAATAAA-----------CTATTTCCCTT--------------GTGACTGCATCTCTCCGTTCCATTAGTAGGAA-----AGAATTATTAATGCCTAACGTCATTCCTAAACCTCACAGTGCTACCCATGCTGT-TTTTATGTCATGTGGGCTCCTGAATGCCagaattttctttgtctttgtatcTCTGGGCCTGGAACAGTGCCTGGATCAGAGTTGAGTGTGACCAGGGGTCATGTTtctctta-------------gatttttaaataaaagataccaAGGCTTATCTGTACAGCAAGGAGTAGGAAATTATGATTTGGATGTCCCAAAAAT---ATTTCTCTCCATCAAATTCAACTTGAATAGGGTAGTGTGTTATCAAAttaaatataatgtt-ttcatttatagaataaattaaagttattttt-cttaatgcttAATATTATATGTGCTTCACTGACATAAGCAAAATGTTTGAGAGATTAGGATCTTAGACCTGTCAAATAATGAGTGTTGGAatcattgaaatttttttattattgtaatatgtttcaaattagaaattaaagagaaaaagaagatatgAGGAAATAATGAGATTAAAACAATCCTGTAATCAAAATTGCAGCTTCTTTATTCTGCCATCTATGTAAAGTAATGGAGAAAATGTGAAGATAATTATAAGAACAAGAggtttaa-agattttaaaatcacaGGGTTGAAAATTGTCTCCCAAGATGTCTCTGTCATGAGCTTTTTGAATGAAATGTGGCTTTGCATTAC-ACTGAATCAAGAAGGTGTAAAACAGTGACATTTCTGAGGGCCTGGGGGCAGGGCATGAAAAATAAGGTTGACTCTTGTTCCCTTTGCTGTATTTTGCAATCCAATGACCAGTTTTGATTTGCTCTGAAAATCCCCCTTTAATTCACGTAAATTTTTTCTAATAGCATGAAATT-TGGGGCAAGAGAGCTACCACACAGAAGG----GTCGCCTCGCTGCCGTGCTGCTTACCGTGAACAGCACTGGGTGATAGATGGTTATAACTTGCCAGGAGCTTCCAGGTGGTGGACGGGAGTGCACTTTACCGATTACAACA-GCCACGCTATTCCCATTTCCtattattctaaaagaaaaactatgaacAAGAAATGCTTCCTTCTTGtttaataattaaacagaaaagtaCTTCTTGCAGATCCTTTTGAAGTAATCATAAGGAGATTTTGAAATCTCAGCAAAG--AGAGTGCCccgtatttttcttttccttctttctctgattttataCCCTGGATAggatggaggggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctg-aagtagGAGACTACTAGGCCTTTAGgcctttagattttattttac-caAATATGAAAACTGCCTAACTCATTAAATTGACTTCTTAAAAATGCATAGTTACAATTTAGAAAGTGAAAGCAGGTTTTGCGGGGAGCTGATTTGAAGCATCAGGTACATACGAAATTCTAG-GAAGGtctaaattaaaatttgaatgatttggaaaaatgtct------taaaatctttataTGAC--------TAGGATATAtg-agaatatttaatatttactgag--AAATAAATCAATCATTATAAATATCTTATTCTCTAA---AAATC-TTCTTTAAAGTTATATGT----TTAAATGCTTACATTATGCATGttatagatactaaaattgaattaatttctatTATAAGTTATAGATCGTATTTATGTCTGTATTAGTCGTAATacaccaat------------------------------------------------------acacacacacacacacacacacacacacacacacacacagcctttaATCTGTGGGTTTTGGACAAT----AAATGAAATTTGTATAGTGAATTGT

a score=61101
s chr3           143544623 4737 + 160039680 [encoded data, 5108 characters]
s HiC_scaffold_1 129728253 4423 + 233722169 [encoded data, 5108 characters]

a score=69273
s chr3           143551541 3305 + 160039680 AAGAGTTTTGGAATCCA--GGATTTCACTCCATCCTTCCTGGGTTGCCTAGTGTTTTCCAGGAAGTGTCCCAGTTTAAGTCTTGCTAAACAAAGCTACCTGCAGATACATTCATAGGAAAATAGCTCTGACAAGAGCAACGCTGGCAGCTACTACTCAACCAATGTGTGCA-GTCTCTGGAGGCAAAGAGCTTCCCAGTTCAGCTTTGTGCTGTAACATTTACGCATCCATAAAGTGGGCAGGCAGAGGCACGTCAGATCAAGAGTTAAAGTGCTTCTGAGAAAA------TCCAATTCGAGACAGCCACATGACAAGGGAGAGAAACAGAACCCAAGCCTCAAGAACTCCAATTTGTGAAGCATGTCTGCTTGTCTCGCCCTTTATTATAACAAGTATTATAAAACAGCTCATCTAATACAGAACCAA----GTCTGTTTCCAGATTCGCTGGCTGGGAGCCTCGGCC----AACTTGGATGAATTCTCTCTTATTTCCTTTCTCTCTGTCTCGGACGTCTCTCTCAAACCTTCCATATTAAATGCGTCTAATTGCA-----------------TTTCTA--AGGTGTATCATTCAGGCCTTCTCTGGAATCCAT---------------GCCACTACATTCTGCTTACATACCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgcgtgCACGTTATTTATATAAATGCGTAAAGTGTTTTGTGTCCCTCAATTAAGTTT----TACCTTGAAAACAGAGGTAGGGTGTATTTAATGTGCCCTCCTTTTAAAATTGATCATGATCAATATCCATAAAAGCTGCCTGGGCAAATGCATGACACTGGGAGTAGAT--TGTATGGTTTTGATGGGAGGGAAGCTCTAGGCTTGGAGATAAGGAACTGCTAC---ATGCCTATTCATGGGAATTTTTTTTTTG----------GCCAAATTTACACATGGTGAAAAATAGA-TATGTCCTCCT-----------TGCAGG-GACTGGAAGAGGTAA-----------------GGCTC---------TAAAGGGCAAGCTCTCAC-CAATGTTGGCTGGAAA-GTGAGTGACTAAGAGCGACATTAGTGATAGGCTTAGATATGGTTCACATTAAACAAGATCGGGCAGATGAAGTGTTCTGGGCTCAT-CTACCCTCTGTCCTGTAGATTAGAGAAGGAGATTGCCTATAAAATAAGACAGATCTCAATTTGGCTTCTCCTTTTTCTAGCATTCTGATGTAAAGACATTTTTAAAATACTTCTACAGTTTTATTCTCCTCAAGAGACCATTGAGACCCATCACAAGGTATGATG----------AGAATTTGGGGAGTCTGTGGAAGAGCCCTCTGAAGAGCTGACAAATGCAGC-CAGTGAATGTACTTCTGGGGCTGACCATTCCTTAAACCACAGAGAAAGAATCCCATGGTTCCACCCAGAACCTTGAGTCTTCAGGGCTTGACATGGAGACTGCAAGCTCGCTATACAACTCTTCTTTCCCCTCCTTTGAACACACAACTTGACAGTGCTTCGCAGGCCTCCTTGCATTCAGCATGATCA--AGATTGTCATCTCTTTAA-------------------------------------------------------------------------------------------------------------TGACGAGA------------------GACTTTGGAGGACAATCAGACCAAA------GCTGCCTCACCATCTGACACCTAGAAGACTCT--GTGAG-AAATGAGCACACTTCCTTTCAATGTTCACTAAAGGGTT--GAGTTTATGCTGCTGCAATATAGTTTATTACATTTTACCGTGTTCACCTTGTCCTGACCTTCAAATTTTTTTGCCTAAATCCC---TAACATGCTGTTTGTCCCTTTAGATACTATTAGCAAAGAGTTCAATTAAAGAGTTAAACCAATACCACTTTATCT----GTTTATTGAGTATTCATATTCTAACCAGGCACCTCGCCatactatatacatactatactatacatactatatactatacatactatactatacatactatatactatacatactatactatacatactataTACTATATACATCTCATGTTTGCCTAAAAGTTACATACCAAACAGTAGGG-----AAAGTTAGCTTGTAGTGGTAACGATCAGGAGCA--------------------------AGTGGGAGCAACTATTAGGAGAACTGTTGAT--TCTCAAGGTCAT-----AGATAGCATCTGTGTACGCATTTTCTATCTTTAAAA----GCGACGGTACTGAACATGCTCCATTCTACC-CTACTTACTTTATGGGCTGTCATATCTCCTTGCCTTCCAGTGTAATTAACGCAAGCCCTTAGCATCCTTTTAAGATCTGACAACTTTATCTTACTCAACTCACTTTCCTTTTCTTTCTAATTAAGCATTTGGGATCTAAGTGATCTGAAGAATATTTTTTCTCCTGAATATTCTAACTTTTATTATGTCAGCATATCTCTCATATCTCTTGAAGTTCTTTGTTTAATATATTAATGTTCTTACCAATGCTTTGAAGATTTCCTTAACATGATGTTTACCCCTTCAGATACTATTAGCGAAGACAGTTCAATAACAGAGTTAAACTGATTCCCCATTATCTGATTATCCAGTCTTCACATCCCAAACAGACACCTCCCCATATCATATTCATCCCATGTTTTCTGTATTCAAA-----TATTTAAGATCTACATATTCAGCCAATTTAAATTAATTTAACTATCAAGATTTCAGAAGTTGCTATACCCAGCATGTTACCGTGTACACTATCGAGACTCAGGATCAAGTAGTCATGGAACAATTTAGCCTTTGGCTAATAGCATCTTTGTGATTTCAGCC-AAAAGTTTCTGGTTTATTTAATCTGTTTTATT-TTTGTGAATCTAGGC-------------------TGTTTTCTCAAAATTGGATCCTCTCCTAGGAAAGGGCTGGATAAATTTTCTTCAATATAAGGCTAAGAATTTAATATCGAGATGGCCAGGAATACATCAGGAAAAACCTGAGCCAAGCAGTAGTCTAAGTCCAATAATAG---------CAATCAATCAGTCAATCAACAAG-TTTTATTAAGTCAGCTTTGGTCTCTGCAGTGTTTAGTGT-GAGGAGAGGTTTAGTCATTTATAAC------AGGCTTCTATAGTAATATTCCTTGGGTTACAAAGCACAGAAGTACAACTCAGGCTCCTTAGAGCACCAGAAGAGAATTGATAGAAGGACTCTGGGTTAGCTCAAGGAAT-GAAGGAAATAATAGTGCAAACACAGA--CCTCAACAGTGAAATAAAATCTTAAGACACAATATGTTAATGTCATGTTTCTCTTTCTTTCTGCC-----TCTTTAGGTGTCAGTTTTATTCACTTTCCATTTCCTTATTT-----GGAAAGGGTCAATGACTGTGGGGCTACAAagacctgcaaatcctctgatctcctgagacagtcagatagctg--agaccagggcagaagatggcttagtctcaccctgaggctaagg
s HiC_scaffold_1 129733713 3470 + 233722169 AAGATTTTTGAAGCCAAAAGAACTGGCTTCCACTCTCCCTGTGGTGTCTACTCTGCCCT-----------CTATATAAGACTtgctaaacaaaataaac-acacatatattAATAGGAAAATAGTTGTTGCAAAACTAATATCAGCAATAAATATTAGAGCAATATGTTTGTGTCTCTGAAG---ATCGGTTTTTCAACTCACCTTTGCCTCATAACATTTGTACATTCATGAAA--AATAGGAGAAAGAACTTCAAACTAGGAATGAAACACCTTTAGAGGATACTAAGTTAAAATTCAGATCATTCACACTAGACAGGAAAAGAACAGAGCCAGAACCTTGTTAATtgttgtttataaaatattttt--ttgt--------ttattataaC-------------CAGATTGTCTTTCACGGAACCAACTCTGTCTGTCACCATAATCCCTGGCTGGCTCCTTTGTTCTTTCACCTTGAAAGACTTTTGTCTACTTTCCATTCTTTCAGTCTCTCAGCTCTGTCTCAATTCATGCATTTCAAATCTTCCTGATTCCAAGAAACTACTCCTTATATTCCCATTAGGTAT-TCATTGTAGCCTTTTCTGGAGTGCATAGCACTGGTAGCTTTGCCATTGCATTGAGCTTGCACac-tcttcctctgtgtgtgtgtgtgtgtgtgtgtgtatgtcctCATACAGGTATATTTG----------------------------AGTATCTTGTCTCATCCCAATAACTTTGTAGCATACTGAGAGCAGACAGAGGGTACATAGGCT----CATCTTTCTAAAA------ATGATACGTGTCTCTGAAGGTTTAGTAGGGAGGTGGGCATGTTTGAGAGTGGATGCTTCATGATGCTGATGGTGAAGA--TCCTGAGCAGTGCAGTCAGGAACTGCTGCCTAATggctattttaattaattaattagttaattaattaatgctGGGTTTagatgcagtggaaaataaaagatGTCTTTCTCCATAACTAGTTGCAAAAGATTGAAAAAAGTAATACATAGTTATTTGAGTAGTTCAGAGCCTGGCAAAGAGCAG---CTCACTCAATAGGGCCTGAAGCTGTGACTGACAGAGCATAGAGTTAGTGAT-GGCTTCTATGCAGCCGTTGTTGAACAAGATGGAACAGATGAAGT-TTAAGGGCTTGTGCTACTCACTGTTGT-taagtcaaaaaatgaaattgGGTTTA--------CAGACCTGAATTCAGCTCCTTCCATTTCTAGCTGTCTgtcttaaagatatttttaaag-attttcccaATGTTGTTTTCCTCATGGAAACATT------TATTACT-TATGTGATGGAGATGTTAAAGGATCTGGTAATGCTGCCAAAGCATCCTCAGA-GAgttaataaatgcaaaatttttaatGCGTTTCCAAGACTGATCCCTCCTTAAACTACAATAAGTGGGTTACCTAA--CAGGCCCAAAC---------TCAGATCTTGTGGTAGAGAACAGTAGCAAATCATACCACTCTGCAGCCCTCT---TTGAACACG--ATTAAACTACTTTTCCCGAGCTTCCTTGCTCTTAGGGTGACCAGAAGATTATTATGTCTCCAAATAGTatgtaaacaaaaacttctaGGAATAGCTTATGAAAACTAATCAGATGCCATGCTGGGGTTTCTCTTCTAAGGGCTGAATCAGACGATGATAGTACACACAGGCATGGTGAGATACAGAAGGCTGAAACCTGGCTTTGGAA-ACGACCAGACCAAACAAACTGCTTCCACACTGAATGCCAAATTGAGAATTCTCAATGAATAAATGGGCAAACTTCTTTTCATCAGTCATTAAAAGATTCCTGCCCTCTGTTACTGAAGACTGGTGTGTTCTAATTTAATGTAGGCATCTTGTACTACCCTGTAA--TACTCTGCCTAAGTCACAGATTAAACACTG-------CGTCAACTGATGATAACA----TTTCAAATAGCAG---CAAATAACAGCACATTGTTTCTAGGTCTGCTGA---TTCACAAGGTCAA-AAataccttttccttttttaactgtAAGGT----TAAATCTTATTTGTTATGTAATTGTTGATTTACCTTTTGTCTTTTGAGTATTCTTTCTCAtg---------taatttgttcattttctgttaggcTA-----TTCATTCTAATTATTTGGGGTTTGAAAGC---CTTATAT--GTAATGATTATTAtcgttttgttatattttatggcTTTTTACAACAAAAGCATATTTCTTCTGCATGTTTCATGGTTTAAAAGTCCttatccattttgagtttagagATGTATTTTCTCTCTTCAGAAAACAGCTGTGGTGCTGAATGCACACTGCCCTATCGCTGCTTGCTTTCTAGATTATCACATTCCCTTATTTTCCAACATAA----CATTGATCcctagtatctttttaaaattcagcaacTTTATCTTAGTCG----------CTTTTCTTTCTAATTAAGCATTTGGGATCTAAGTGAGCTGAGGAAAAATTTTCTGTCT-AATATCCT----TTTACTTTGTCAGTGTATCTCTCATATCTCttcaaattttttgtttaatttattaatGTTCTTTCCAATCCTTTGAAGATTTCATTAGCATGCTGTTTACCCCTTCAGATGCTATTAGTAAAGATGGTCCAATAAAACAGTTAAACTGA-TCCCCATTATCTGATTAAGCAATCTGCACATTCCAACCTGACACCTTC-----TTATATTCATCCCATGTTTGCTGTATTTAGATACTGTATTTAAGATCTACACATTCAgccaatttaaattaatttaactaTCAAGATTTCACAAGATGCTGTATCTAGCACTTTACTGCATGCATTATCAAGACACAAGATCAAATAATCATCTACCACATT-GCCCATGGCTAATACAGTCTTTGTAATTTCAGCCAAAAAGTTTCTAg----tctaatctgttttattctttgagaATTTAGGCTATTTATTACTAGTGGCCTTGTTTTCTCTGGGTTGTATTACCTCTTAAGAGAAGTATGGATAAATATTCCTCAGTATAAGGCAAAGAATATATTATTGAGAAGGTT---AATTTAGCAGGAACAATGTAAGCAAAGGAACAGTCTAATTTCAGTATCAATCAGTcattcaatcaatcaatcattcaACAAGTTTTTATTGAACCAGCCATGTGCTCTGCACAGTCCTGAATAGTGGGGgaatatagacatataaaacatAGTAAAGgttttaaataaatgttctttAAGTTACAAGTCACAGAAGCACAACTTGGGCTATTTAAAACACCAG-AGAAAATTTATTGGAAGAATCTGGCTTAGCTCACAGAGTGGAAGGAAACAGTACTGTAGCTATAGGACCATCAGAAGTGgaacaaaaacccagaaattGTCACCTTAAAgttgtatttcaatttttctttgccttttgtctttagATGTTAGTTTCATATTcttgtcatttattcatttttttgaaaaagtgtCA-------TGTGATCATAGAGGCTGGCAGGTTCCAAGGTCTCCAGGGAGGGTCAGCAAGCTGGAGAACCAGGAGAAATGATGACTTCATCCCAGACTCAGTCTGAAG

a score=42865
s chr3           143555906 3229 + 160039680 ATTGTAGGTATGGATGCTTGTTAGCCATCCTCCGATTAGGTGATTGTAGGCAT--GGATGC----TTGTTAGCCATCTTGAGGTACAGCTACTCAGTTCTTTCTTTGTGAGAAGAGATGGGGTGAATATTTTAACTAGCAACCTCGATTTCCAACAGAAATATCTAGCGACTGTTGGCAAGAGGCCCTTCCTTCAAAGCA-TGAGGGTGAGGCAATAAATTGAAGGCAACATAATA----GCCACCAGATACATCACGCTTTCAAAGAGTTTGCAAGCTATTTAGAGGAGCAAAGTCAACACAGTGATTCATGGGCAGCTTATAATGATGCACCCCACATTGACACATTCCAAAAGTGCACAGTGGTGCATTGAATAGAATAGTCCAGAAAGCTGGTTATAATCATGGGCCATTTCATAACAGAGCTCCGACTCAAACTGAGCTGTGAAAGATTTAAACATAGGTAGAGATATTAGATAAGGCTTTGGAGATGGGAGTAATGAGGTCAGAGTGAACATGCCATGTGACTGAGGGGAGTTTACGGAGCAAACAGGAAGGATCCAAGGGTAATGCAGTCAC-CATGGAGACACTTAAGGAATCACATGTACAAACTTATTCCCAGAACATCTCCTAGGCACACAGCTCCCCACTTGGGCTTTGAAAAGACtttattttgtttgaagttgtgaat--gcttacatatatgtaccatgtgaaggtctagaggccagaag--agggtttctg-attccttggaaatgggattataactgttgtgagtcacgatgtgggtactgggaatgg-------aatactctcaaatcctctctgagagcgaaagtgttct---taacccccgggtcatctct-----------tcaggccTCTCACTTACTGAATCTGTGCATAAAATTCATTCTCCATCTCCCTTGTTA--------GCTGAAACTTAAGTGAGTCTTAAAAATTCACTTTCCAACTCACAAGGATAACTTTGTGTTTTATTTATTTTCCAGGCTGGGATACTTCTAAATTCA-----ATTTGGAATGGGCTCTG-----------TCATCTCAATTTTCATGTGTCTTGTCAATATTCCTTAATTCTCAGGGAAATCCCCTAGTTTTGGGGGTTATGACTACCACTGTCTTTTATGGGGCACTTCTCCTTGGGTTGTGGTCACTAGAAACAGTGAAATAATCCCCCTAGTCTTTATTTCTTTCCCCCAAATTCAGGACTATGAGTTTATGTGCAGTATTTATGAAAATATTTGGAACTCGTATTACTTATTCTTG-----TGACAACTTTCTC-------------TATTTCTAACCATGGGATCTGATGATTAGAATGTTTTCAGGGTTCTTGTTCTTTAAATTTTGAGGAAACTTGGTCTTTGGATTTTTATTTATCCTTCTACTAGCCACTTTTTTTATTATCTATT------TTATTTTAttttttaaaatatttttt----attacatattttcctcaattacatttccaatgctatcccaaaagtcccccataccctcccctccacttc-cctacccacccattcccagagaggccctttggac-acgcaaactgtatatgccccagtacaggggaacgccaccccataatcagcttccaaatgctgacaccat-tgcatacactagcaagattttatcga----aaggac------------------ccagatgttgctgtctcttgtgagactgtgccggggcctagcaaacacagaagtggatgctcaca----gtcagctactagccacttttatgtatagttcaagactacttgtctaagaatgtttttgcctacagtgggctggactctcctgcatcaattgaaaatcaacaatacccc-caagacatgcccacaagccaatctgatctatacagttcctcaactgaggctttcctctctgataagtctaggttgcatccagttaaaactaacTGTGGCGATTACCTTTCCCCAGAACTCCCATAACAACCTTCTATATGT---CTTAGTCTTTGTTTTATCCACCAACTCACCATCAAACTCATTTTTCATGTGGCAAATGAAGATACTTATCTAAAATCCATATGTTGTCGCCTCCTTATCTTCCTCTTTAATATCTAGCA--GACTCTTTCCAATGCAATTTATGTATTTTCACTTAATTCACC-TTAGCACTAGATACA-AAACTTCCCTCTATAATCACCATAGCAGGAAAGAAAATGTCTTATTTATCTCCACAAATACTATATTTTTATAATCTCATCAGACAGAATGGAATGCAGATAGCTGTAATTCTTTTTCTC-CATCCATGATTCTC-TTAACACTATAAACCCTGAACAGATCGCTCCTTTCCCAGTTCATTTATTCTGAGCCTTCCTTCAGACAGGA--------CAGGTGTCACTTATCACAAGAGGTCCCTCCTACTCACCTCTTTGTTGGGTTGGAAACCTATATCAGCTTTATTAGTGAAGAAGTTTAAAGCTACTCTGGGCATTCTAAACAGGATGGCATTTAATATCAGAAATAAAATAGT----ACATGTTTGCCAATA-TTGTAGCAGTCAGAAAAATCCAGTGTTTGTGGCAGAAAAACATCAC-CATAAAGTCTTCATATTAGCATACCAACTCATTGCCTAATTTTTCTTTCATAGTGGTGTCCAGGTTGGATCAATAGCATGG--ACTTTACTCTGGGTGATAGCTACTCCGATATCCAAGCTGACATTGACTCTGTCCATTGAAACTTTAAGTCTCTCAGACACTGCAGCTATGGAAAAGAAATTCTGGAAAATCTCAAGTGGCAAATCCTGGAAGTAA-------------TGCTTTTCTCTGATGCTTGCTTCACT-----GACCCATCTGGCTGTGTGTGCCATTTTCTATGTGTCTAGACAAAGAGGGGGGTGGGTATACGGCTTTAAT---TTAAAG--GTGGAGACTGAAACTCAAGGACCCGCAGGAATACCACTGTTGCACTGTTGCACAACT---CCTCAGCAGAGCTGGAGTTCCGTTTGTGTTACTGATCAATGT--CTGCTGGCTCTCTC-TGTGTCTCCTCTCTACTAGGACCTATTTAAAGGATACGCTTGCTTGTAG----GAAGATGACAACcttgtctgagcccaggaagtagaggggaa---acatatgctgctcccaagaagaagatttgggggtccccacatggttgccttttgcacttttctatttgctgccagtgggacaagttcccagagagaaactg-catctgcatcctagagtgaggagtgtatg-----gagcatcagacaatctctggatggcagtgaacatgagcaagatgctaccttctgctg-tgcaagccattc
s HiC_scaffold_1 129738008 3069 + 233722169 ATCCTAAATAAGAACTCTTATTAGCTACCCTATGGACAAATCACCATAACTATCAGAATGCAATATTATTAGTGACCC---AGCATGGTCACTTGGTTATTTCTGTGATGGAAAGGATGAGGTGAA--------------ATCTTGATTTTCAGCAGACACATACAGCTACAATTGACA-GAGACATTTCCTTTAAAGAAATGGTGATAGAACAGTAAAGCAAAGCCAAAATAATAAATAGCCACCACACAGATCATGCTCTGAAAGAGCGTGTAAGCTATTTAGAGAAGCAAAGCCAACACAGGGATTCATGAACAATTTATAATGATGCACCCCACATTGACATATCCAAAAAGTGCACAGTGGTGCATAGAATAGGAAAGTCCAGAAAGCCAGGTATAATCAGGAAATGCTTCATAACAGAGACAGAATACACACTGGGCCTTGAAAGATTTAGATGTAAGTAGAGAGATTAGCCGAAGCCTTTGAGGTGAGAAGAATGAAATTGGAATAGGTACAGCATGCTGTTGAAAAGAACTTCTAGAGCAGAAAGAGAAGAAGT-AGTATTATGCAGTCACTTACAGAGGAACTTGAGGAATGACCTGCACAACATCACCTCATTAAC--TTTCTTGCTATA----TCCTTGACTTAATGTACAAAATAC------TTGCCCCAACTCCTTTATTAGCTGACATTTAAGTgtttctttgaatttcattttcctttagttaGGGTTACTATATGCTATGTCATTCAGGTTGGGATACCTCTGAGTTAA---------ACTGGGAATTGGTTTAATAGTCTTCTCAGTTCCC-----------ACAGTCTTCTGTCTCACCCAAAGTTCATTATTATCATAAGCTCACAGGTAGTGCTCATGCTAGATGTCT-----AAACACATACTTTA-ATGTCTTGTCATGGTCTCTTCTAAGACTTCTGTCTGTATT-TAATTTCACTTTCTAG-TCACTATGGTACAGTGGTACATAGTTCAC----------------CCTCTAAACTCGTGACCATCTAGAATGGCCTCTGAGGGACTGaatccatctc--tctttgtctttaccataaatattttc-------------aatcttttcCATTTGGGGG----------------------------AATTCCATTTGAATCTTAG-----AAAAACA-----------CATTCAGTTTTTTTCCCTTGGTCCCA----------------------TGCAACACTTTTCATATCATC-----CTTTTATTCTCCATTCTTGATTTCTAATTCCCTTTTCGATCCTATAGCAATCTTTCTTACTACAAAATCTAATGGTGAT-ATCTTAACAAATTTCTACTTCT----------AAAacatattgttttt-cattcttctttatccTTC--CTATTC---TTCTCTTTTGTCTATTTGCAAATTCTTTTCTTAGTTGTGATGTTCTTTCAGGACAAAGAACTT------ACTATATTTTCTGTGTAATCAC--------------CCCCTTCCTCAATTTCACCTGACTAATTATTCT----GAAGTCTTCAAATCTATGTTATCAGTTTAGAGCTCTGTTCTGAGTTTCAGACCCTGATATCTATTTTTCATAGATTTA-ACTATGTGaatatattcttaatattttaacaaCAATAAGTACAAATTTGAATTACCTGCTCCCACTCCTCCAATATCTTTCTCAGC--TGCAGTGACCTCACCCACCCAATTTTGCAtgttagaaacatatgaaatattatttgattttccCTTTTTGTCACTAACAC---ACTAAGCAGG--------TATAGTG-------------------AATTGAATATCCAGAATATTTAGCAATGTGTTCCC-TAATCTAATCTCCTTTGC-TACTTCCCTAATTTAAACCTTCCTC----------------------------------------------ACCTTTTCCCGGGACTACCACGATTGCCTTCTAAATGGCTACTTATCCTTCACTTTATCCATTAAACAACCTTCAAGTCTATTTTTCAAGTGG-----------ACTTTTCTAAAGTTCATGTGTTTTCacct-cttctgtttctctttcagtgCCATCAATGACTTTTTCCAGTCACTTTCATATAATTTAACTTCACATACCTTTAACAATGGACACATGAATGTCTGTCTCTAATTACCTTAATAAGGTTCAGAGCttcttattta-cttcac----------ttttTGTAACTGCAACAGACAGAATGAAATATAGATGCCCACAATTCTGTTCCTTACATCTGTGCTTTTCATAAACACTA-AAGCTTTGTGTGGAATACATCTTCTCC--TTTACTTTTCCC--ACACTACTCTAGTCATAAATGTAGTTCAGTTGTCATTTCACCCAAGAAGTCCTTCACAATCATCTCCTGATTGGGTTAGGAACATGTATTAGTCAGATCAGTGTAGAAAACAGAATCCATTTAGGAAATTTCAAGCAGGAACGAATTTAATAGCAGAAATAGAATAGTTATAATACCACTACCAATGTTTGTGCTGGCCGGGAAAACCTAGGATATGTGGTAGAGACAAATTAAGCTCAAAGTCGCTGGTTTAACATAGCACTGTACTATCTG--TCTCCTCTTACTAGAATGTCCAATGTAAATCAGTaacaaggaaaatttattttggtttaaagTCACTCAGAGACCCACACTGGCAGTGATTGTGCCTACAGAACCTTGAGTTCT-------ACTGCAGTTGGAGAAAAGAGATCCTGCA------------GCTTGTCCTGGAATTAACTCTCACTGTGGCTGCTTTTTTATTGGCCCTGCTTTGCTATATGGTCCCCACAAGCTATATGTGCACTTTTCTATATGCTCAG--AAAAAGGAAGTTGGATATTGGAATGTGCTGCCTTAAAGTCGTAGAAAATGGAA--TGGGGCAATGGAAGAAT----TTTCTCCACAGTAGCACCAATAACACTTGGCAGAGTTGGAGTTCAGTTAATACTGCTGTTTCATGCTGCTGCTGCCCCTCTCATTTGACATCTTCTTCTCAGCTCCTCCCTCAGTGCTAAGTATATTCCAAACTCCGCCAATGACAGGATTGTCTGGGCCAAGGGGTGGTAAGGAAAGTGACAAATGCTACTTCTAAAGACAAGAGTCAGTATGCATCAC-------CCAATCGCTCTTTCCCATGTACCGTCAGTGTGGC-ATTTCCCCCACTCAAGCTGTTATCTTCAACTTAGAGTGAAATGTATATGGAGAAGAGCTTCAGGCAGCTGACATACTATATTTAGTATGAGTAAGATGTAAGCTTTTGCTATTGTAAGGCATTC

a score=39877
s chr3           143560115 883 + 160039680 GGGGAGAGAGGAATGGAGGATGGGTGGTAGATAAGA-CATTTGCT---TCCGGTTCA-AATAGTCAGAAGCCTGTCACCCCCTCTAACACAGAGGAAGGGAAGTGTTATGGCTGGAAGGCAGGCTCAAACAATTGGCAATCCCATTGGAACCGCAGAAAAGGAAAG----TAGTTCCCCAAAGACAAAGAAGTTGCTAACATC-AAGATGAAGAGAAGAAATGGTATCCTTAACAGGAACCCATTGAAGTGACAGTAATTATTCATCAAAGGTATACTCGCTGTATCCC----TGCCCTTCAAAAGAGCACAAAAC---CAGCATCACTCTGCTTTCCAAATCCAGCA----------------------------------GTGTTCAGCTTCCCCATCCCCTCTGCTCAAATCAATAGGAAAAAAATAAAGATAATCTACATTAATTTGGCTGCAGTTGTTTTAACATCCCCTGAAACCTTGAAGAGCAGCAGTACTGGGCCAGCTTGAAGAAAACCTTTCTGACAGGAAAGCAAGATTCAAAAAA---TGTTCCCCAGTTTGCTAGGCTTATAAGCCTAGGGCAAGTTTAATTAAACTCAATGGAGCATTTTAAAGTGAAGAAAAAATTAGGACAGCAAGAAAAACGTGTTGATTGTTTCCTAATTATGCTGTGGACTTTCTCTCTAATGCA--ACCCCTCCTTTCTCTCCCTAAATAAAACAACTGGCACATTAAGTTTGCACAGAGAAGACTATACCTCAATCATGTGTCCTGCAC-------------CACTCTCCTGCT------GGGCTGTGCTTTTAGAGACTTTCCTACATTGGGGGTGCTGTGTTTTGTTTCATAGAGTTATTTAAGCAAATACAAAAAAGAAGAAAGAAAAAGAAAATGCAAGCAACACATGAAGCTTCAACAGTTGTCAACC-TTTTGTCagagag
s HiC_scaffold_1 129741474 919 + 233722169 gaggagagagagacagaaagagagaggcagagagaagcacTTACTGGTTCTGATCCAGAATGGTCACGTGTTCATTCAACTCTTTTCCAAAGAGGGTGAGGGTTG------CTGAAGGGTAGACCAAAATAGCTGGCAGTGTTCCTGGGACCACAGAAATGGGGAGGTGGTGATTCCCCAGAGCAAAAGA---TACTAATGTCCAAGATGAAGGGCAGAAGCA-CATCCCTAATAGCAGTCCTTTGACTTGGCAGTAATGATTCATCATTGGCATCCCCTCTCTATCCCCTTCTATCTTGCATAACTATATAAACCATCTACCCCCTCTCTGCTTCCCAAACCAGGCATCTTTAATAACCTTGCAGAAGTCTTTTATTTGCAGTGTTCAGCTTCCC-GTCCCCTCTGCTCAAAtcaataggaaaaa--taaagataatctaCATTAATTTGGTTGCAGTTGTTTTAACATCCCCTGAAACCTTGAAGTTCAGCAGTACTGGGCCAGCTTGAAGAAAACCTTTCTGACAGGAAAGCGAGTTTCAAAAAAAAGTGCTCCCCAGTTTGCTAGGCTTATAAGCCTAGGGCAAGTTTAATTAAACTCAATGGAGCAttttaaagtgaagaaaaaattAGGACAGCAAGAAAAACGTGTTGATTGTTTCCTAATTATGCTGTGGACTCTCTCTCTAATGCATCccccctcctttctctccctaaATGAAATAACTGGCACGTTAAGTTTGCACATAGAAGATCACATCTCAACCAAGCATTCTTCACAGCCCAGTCCACTCCCTCCCCTGCTGCTACAGGGCTGT-TTTATAGAGGCTTTC-----------ATGCT--------TTCAATAGAGACATTttaccaaattttttaaaagataga-------aaaattcaaggaactcATTAGATTCTATCCGTTCCCAACCATTTTATTAAGGAG

a score=151872
s chr3           143563579 4512 + 160039680 [encoded data, 4812 characters]
s HiC_scaffold_1 129744424 4299 + 233722169 [encoded data, 4812 characters]

a score=66214
s chr3           143568702 2440 + 160039680 AGCCATAAATCCATAACCTTAACCAACTTTGTTCAGGATTGATGGAGAATGT-CCTTGTGGACTG-TGATGAAGATCTAGAGAATACTGTGATAGGGACAGTGACGGCAAAATCTATTGATGTCTGTATAGGA------------------------TAATGTGGGT-----AGCCGTTCTCAGA------------AGATG---ACGGCT--AGGCTGGGAACACAGACAGGCTCATCAGGAGATGCTCACCCAGTTTCACCCAAGGCTGAGAACCACAGAGCATCATTCTGATGGCGAAGGCATGTGAAAGTCTAGTGTAGAGGATGCTG-------GCATTTTGTTG------------GGGTTTTTTGTTAAGAATTTTTTTAACTTGTGGTATTTAATTTACTTTT-ATTGCTCCTCATATAGTTTAAGTACAAACAAATAAAAAAAAACCCCAGTGTATCATATTATGTAGGACAGGATTAATTAGCAAGGTGTAAATAGAGAAAGGCAGAAAGGTATTTAGGGTTAGAAAAAGTGTGTGTGAGGGCAAGTTAGTAAACCATTAAAAG-CATGATACAATTAACTGAGGCTCCAGAATCAGCCCTGGGGCATTCAGGGTTCATTTATTTAGTATTTATTG----TCTACTAT-------ATTCCATGTTAGGTTGGACAGTTTTATCCGTTCATTGTTTAATACTATAAAGGCACTACAGAGTCTTATGAATCAATGAAATTTATAGTCTTAAATACTCTCCCATATACTGGGCCATTTAAAACTTGTATGGCATATTCATAATCATGATATTCTGGACGTTAAGCTATTG--------CCCCTTTGT----AATTGTCTACCA-TCTGCTGGCAGGCTTTTaaaagccataccaattggttatcagtattaaatggtcagctcagacagtgcacacaggtagcattttaagactgagtaggttatatttatgtattttgtaacatatatacacataactaacaacaacaacaattaaagaagaaaaagagaggccatggatttaaaagagagcaaggggtaaggggaacaaaagagtttggagtttgataagggcaggaaaagtgaggtaaatataatcttaaaaattaTTGTTTTTTATAAAAGCCAAATACTTTTCTTTCTGGGAACTAAGAAGAATTTGGAGATCAGAGCACCAAAATAGTTATTTGTTT-------------------TAA--TTAGCTGTTAAAGGCCTACTTGGAGCAGCATATATCCTCTTTCTGATTG-----GCACACTGAGCC-ATTTCAGTGCAACCCACATGATGTGAGTCGTTAACAATGCACAGCCCAAATCCACACACTAATAAAGAAAGGGCAATGCTTGCACTATAGTGCCAGAGCGGTTGTCTGTTATTTGCTTCTGCTGTCGAAAGAGAAAAATAAGTCTTCGATATTACAGCTGTCACCATGACATCTGTTGTTTCGGGATCTGTGGCTGCTTCGTTCACCACCTGACCCAGGCCCTCACCATGACATTCTGTCCACTATTAAACTGTGAAAGGCTTGCGCCCTCCAGGTGGGACTTCAAGGTTGACATACCAAGGTGTTTGTCTCTGTCCCCCTGACTGCCTCTCAATTGAAAAACACAGCTTCACTTGGTACAGAATTGATGGCCACCCAGGTCTCCCAGGGGTCAAGGGGAGCAGCTGAGAGCAAGAGTTCTTGAGGCATGGCCCTTTCCTGCTTTTTAATCACTTGTCAC-AGCCCTGCAGGGCCTCAGCCCTTTCAGAGGTGTCGCCTTTTGTTCCTGGCTGGTGGTGGCTATAGTCTTGCTTTAGACAAATGACTCCAGGTAATAAAGCAATAGTCAGGGCACACACAGAGATCTCAACTTACAAAGCA-GATGCAGGGGGCGTCATTTGTCTTCACTAACACATGGAGAATGTGTGACTTTTAGGAAGGTCCT---------------CTCTGGTTGCTTGTGTTTGTTGCGATGGTTAATGAGGTAAGAGAATGCTTACACCAA-------GCAATGACATCACAAGGTAGGAAAGGACCCTGTAATTAAGGATGAGGTAAACCTCTCCTATCCCCTTAATGGAACACACTGTGTATATAGATCCAGGAGCTTTGCTGCTGTGAAGAGCTTCCCTTCTCAGGATTCCTTCG--TACCCTTTCTTCTTGTCCattcgttcattcagaatctattcattgagaagt-tgtgccctaggttgggtactgagactaaggcagaaaaggagaaaatag-----acacagttcct-tctctcttgaagttGAGGCCAACAACAAAA-GCCAGGGCCCACAGTTGTGTTTGGGGGATAAATG------------TTCCCTTGTAGATGGGAGAAAAAAAAGAAAGAGAAAAAGAGGAAAAAACCAGACTATCTAACTTTGCCTGGTCTCCTAGTCATTTGATACCAGCCAG-AATACACTTCCAGTGTATTCTGAAGTCTCAGGATGCTCTAATTCAGAAGATACCAGGACCATCAAGTTGCTGCTTCTCATAGGGCATGCTTCCATTTTTCTTTATGTTCCTTCCCTG
s HiC_scaffold_1 129749715 2278 + 233722169 AACCATAATGCCAAAGCCTAAATGACATTTGTTTAGGACTAGCAGAAAATATGACCAATGGACAGATTCTACTAATCCAGACAAT--TGTGGTAAGAAGAGAGACACTGAGATCTATT------TGTCTAGGAGATTCAAAAATGAGGTAGCAATATTATTGCAAGTTTCAAAGCAGCCTGCAGATCAGCCCCAAACAGATGTGCCCGTCTTCAAGCTGGGAACACAGAGACACTCAGCAGTTGATGGTCACACCATTCCATACTAG-TTGAGGAATAGAAGAGATTTTTCTGAC-----AGGGATTTGGAAGCCCACTTTCAAGGATATTGAGTTGTAGTATTTTATTGTCGGTGGTAGTGGTATTTCCTCTGAAAAATTCTTTTAACTTATGGTacttaatttactttttattggaTCCCATATAGTTTAAGcgcatacaaataaaaaaga-caccAGCATATCATATTATTTAGAACAAGATTAATTAGCAACGTATATACAGAGAGAGGTAGAATGATATTCAGGGTCAGAAAAAGAG------GAGGCAAAT-GGTAAACACTTAAGAGGAATGGTACAATTAGCTAAGGTTCCAGAAACAACCCTGGAGGAAGCACaattcatttgtttaatatttattgagtgcctactatGCCAGGTATTATACACTAGAC---ACAGCTTCGTCCATTCATTGTTTAACATTGTAACGCTGCTGTATATACttataaatcaatgaaatttatAGTCTCATAGATGACTCAGTATATTGGgccatttaaaaattctgtggcATATTTATAATCATGATATTCTGGATTTCACACCACTGAAAGCTCTCCACTTTGTCAGTAATTGTCTACCAATTTGCTAGTAGGTTTTTAAAAGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATAAG-------------------------------------------------------------TTTTCTCAGCAGGAACCTAGGAGAATTGAGTGATGGTAAcaccaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatttagCTGTTACAATTCTACCCAGAGCACTGTGTTCTCTATTTTGTATTGTAAGGAAATACTGGGCTGATTGAAATTTAGCACATGTGGCGTCAGGAATTAACATTGTACAGCCCAAGTGAGCAAACTAATAAAGGAAAGGAGGTGCTTCCTCTGTAGGATCAGATCTGTTACTTGTTATTTGGTTCTGCTgctgaaggagaaaaataagtcTTGGATATTACAGCTGTCACTGTGACATCTGTTGTCTCAGGATCTGTGACTGCTTCAGTCACCACCTGACCCAGATCATCACCATAACATTCTGTCCACTATTAAACTGTGAAAGGCCCTTGCCCTCCAGGTGGTACTTCAAGGTTGACATACCTAGgtgtttgtctctgtctccctgaCTGCCTCTCAGCTGAAAAATACAGCCTCACTTTGTGCAGAATTGATGGCAAACCAAGTCTCCCAGGGTTCAAGGGGAGCAGTGGAGAGCAAGAGTTCTTGAGGCGTAGCCCTGTTCTGC-TTTTAATCACTTGTCACAAGTGCTGGAGGGCCTTGGAGCATTCAGAGGTGTCACTTTCTGTTCTTTGTTGGTCATGGCTGTCCTCTTCCTTTGGAAAGATGACTCCAGCTATTAAAACAACCACAGTGGTACGTGTGCAAATTCCAACTTGAAAAACAGGGTGGGTAAAGGTTTATTAGTCCTTCTCAACCCataaaaagtattttacttttaaaaaggtcTTCTAAAAGATTTCCACCTCTGACTGTATGTGTTTGGTCAGATCACTAATGGCATTAGACAGTGTTACTGATAATTTAGATGCAAAGTTGTCACATGATGAAGTAAGAGGCCATCACC-----TGAGCCAGGCCT-TCCCATACATTTACAGGAATGTAATGAATATGTA-----AGGTACATGTCTGCTAT-AACAGCTTCTCTTCCAGGGACTCATTcacttatttgttcat-ttatccattctttcatttagaatatatatatatatatatatatatatatatatatatgctgggACTAAGG--ATAAAGCAGAAGGTAGAGGATACAGAGTGACTATTTCTCATGGAGTTGAGCTTGACAAGAAAATGCCAGTGTTCATAACTATGTCTGTGCCACAAATGTAGCACAGATATTTCCCATATAATTGAAATATAAAGAACGCATG-------------------------CCCACTT---CTGGCCACCTAGCCACTTGAAAGCAAGAAGCAGTTTACTTGCATTATATCACAAAGTACCAGG-TGATCTAACTCACAAAAGAACAGAGGAGACATG-AGCTGCTCCTTGTCTGGCGTATCtcagtttactttttcttttcatttctg

a score=130957
s chr3           143572718 4553 + 160039680 [encoded data, 4794 characters]
s HiC_scaffold_1 129752321 4439 + 233722169 [encoded data, 4794 characters]

a score=140245
s chr3           143577578 5654 + 160039680 [encoded data, 6144 characters]
s HiC_scaffold_1 129757441 5496 + 233722169 [encoded data, 6144 characters]

a score=138677
s chr3           143584341 5423 + 160039680 [encoded data, 5971 characters]
s HiC_scaffold_1 129764209 5423 + 233722169 [encoded data, 5971 characters]

a score=29449
s chr3           143590848 1599 + 160039680 TCTGAATTTTCACAGCTAGTCAGGGGCAGG--CAGAGGAAAAAACTACCTCTGGTCTTTTCATTCTGG-TTTTGGTGTATTTTATTACTACTATGGAATTAAGTTTC------GAAACTTCTCTTTGTAAAATTTACAAACAAGAAAAAAAATAAATACTCATCTTATTTAATCTTATTTTACAAATGCAA--CTGTTTCAAAGAAGGGTGGTTTTCCATGCTCTTATCATGTTAATTATAAAATTAGAGACGCTAGGACAAAGGTCCCTTGAGTCTTCATTTCTCCTTTGTGCTTTCTGGtttagtcactggacatacattcattgaatatctgctttgggccagacactata------tgagcctgagTCTCTGTTG--CCAAAGCACTAAGCCG-------ATTACTAAAATGAAGAGAAAAGGAAGGTCACAGGGATATTTACAGTGGGACTCAATGGGTGCCCAACCCTGAAATTTACCAAAAAACAAGATTCCC--ACTCCT-GTAGCCATCTATTTCCATCCATCCATAGGACAGATTTTCTATTTGGCACTGAC------CAAATTGCCAGAAATTGGGAGAATGGGTTGGCCCAGGGGGCTGCAGGGCAGCTGTGCAGGCAGCCGGAGTCACACTCCTGAGG-GGAAGGTGGGCATCTAGCATGGTTTGGCAGCTGTGTAATGATGCTGAAATCATACAGTTGCCAGGTCCCAACTGTATTAGAGCTGACCTTAAGATGGATTGTGAAAACTATTCAAATAGATCTCTCCTTCTGGAAAGTTTTCAGAGAAAAGGGGGAAGAAACAATAAAATGCCTGCAATTTGCACCCCATC-------------CCGTACACAACCTCTACACCCTCCCCAGAACAAAGTCATTATCCCCAGTGGGTCCTGAAAGCCCAAGACTGATGGGAAAGGAGAAAAACATAGCCTTAAGCTTCTTGCATGGCAACAAAACTGGTTTCTGGATGGTGCCAGGCTCATTGGGAGGAGGCAGAGGCTTGTCAAGGAAAGTTAGAGTCCAACTAGAG--------TGGGCACTAGAGGTGACCAACACAAGTCACACAACAGTCATTTCCCTCACCACACAAAGAGAACGATGCTACAAAAGTCCTGGCACAAAGATGGTGCGCCATGAATATGTACTGAGTGAATGGGGATCAAATCGATA--------TCTTAGCTATCATTGTCTA-------TTGTTTCCCTTGGTTTTGGAGAACAGTTATTT-------ACTCTCGACCTGGTATCATATTGATAATAAAGCTTTAG--------------TCTCAGTAT------------------------------------TCAACTGTTTAACTAATACGCTTGATTTCTCACTACA-CCAAAGCATCAAGGATATGGTTAC-----AAACTCTATGTAATTGTTATTCTTCCCAGGCTTGCAGTCTGATGACAGAAGACAGACACT--ATTTTGAATCTAAACTCTTTGCCCAGTAACTCCTTGACTGTGGGT-TGATTATATCTTTGTTCCTCGGTTTTCTC--ATGTATACAAGAGGTAAATGATAGC-------------ATTTGACATCTATG--------------AAACACTCAGTAGATTATCTTCCACTTAATGAGCAGGACA-AAATTGCTTATGA--GGTTTATCCACTCCGGAGAGGCAGAAGTGGAAAAGGCTCATACACA-GCTGTGAAGACTGGAGTCAGATACTGAGAA
s HiC_scaffold_1 129771495 1695 + 233722169 TTTAAGCTTTCATGGCTTCTCATTGGCAGAGTCAGTGGCAGGAACtgaattctttctgtgggctctGGGCTTTGGCATCTGTTCTTTTTGCTGTGTAATTCTACCTCTAAGTAAAAAATTTCAATTGTAAAATTTAAGAacacagaagaatttaaaatctcTTCTTATTCAATcttattttataagtaaaaagCTAAACCACAGGGACATAATTTTCGA-ATTTTTACCACACTAAT-AGAAAACT-GAGAAACTAGAACTGAGGTTTCCTGATTTCTCGTTTT---------CTCCATAGTTTTATACATGGAtaaccatt--ttaaatatatagttttatatagAGACAATAATGTACTGTACTAAGGACATTGTGGATCCAGTGGATAAAACCGTTTCACAATTACAGAAATGATGAGAAATGGAAGACCACGTGAGTACCTACCCTTGAAA-CAGTGGctgcct----ttgttttttt-----aaatgaggtttcTGGACTCTTTGGAGC-----ATGACTACCAAGGAATAGGTCAGACTCATGCTCTGGCACGGCCGCGTTCCACATTTCC-----TTG--AGGCCAAGTTGATTC-------TGTAGTGCCTCTTTGCAGGAGCCCGGGGGC-CGCCCCTGATGTGGAAGGTGGGCAACTGGTGTGTTTTGGCAGCTGTGTAAC-AGGCAGAAATCGCACTGCTGCCAGGACCCAACAGAATTAGAGCTGACCTTAAGATGGATTTTACAAACTATTCAAGCAGATCTCTctttttggaaagttttcagagtaaagaagaagaaaacaataaaatgcttCCAATTTGCAGTCCCTCCGTGTGAGAGTTGCTGCTTGCAGCCCCCACACGCTCCCCAGCATTGAGTCATTATCCCCAGTGGGTTCTGAAAGCCTAAGATagatggaaaacaaaagaaacatgacttAGAGCTCCTTGCATGGGATCAGAACTGGCCTATTCATGTTGCTGGTCTC--------GAGGTATCAGCC--TTGAGAAAAG---GAGGCGGATGGGAGAATATCGCTGGGTCCAAGAAGTTACTGGGTCAG--CATGCA----tcatttcttt---ctcaaaaaaagaatcaCGTTGACCAGGGCCTATTGCATAGTAGGTGCTAAGTAAATATCCACTGAATGAATAATGCATGAATGAATAACTGTCTCTTTTAG-TGTTTTCGTTTACCTGGttttattttccctgattttgaagaaaacttgTTCTGCTCAGGTTTTCTTCTGGTTATTTCATAGAGGATAATGATTTAGGCATTATAAATGCCTCAGAGTATAAATGAGGCATTACAAATCCTCAGAGCCTGAAACAGTCAGTCATTTGACCAAAATATTTGTGTGCTTACTGTGTTTTAGGCATCAGAGATACAATATTTGGCAAAACCATACACAATTATTTCTCTTGTGGAGCTTGCAGCCTG-TGA-AGTAAACTGATCATGAGCTTTGAATCTTGATGTTACCCCTTATCAATGTTTG--TAAGGATATGTATATATCCTTGAGACTCTGTGTCCTCAAATGTAATAAGGAGATAAA--ATAGTTGCACTGAGTTCAAttttatgtatatgcatgtatgtatagaAAACATTTGGAATATTGTCTGGCACTTAATAAGCACTACATAAAATGTTTGGGAATGCCTCATATattgctgtgaggattaaatgtaaaa-attcatGTGCATGATGAGTATGGTACGGGCATATATTAAGAA

a score=287349
s chr3           143593315 12663 + 160039680 [encoded data, 13902 characters]
s HiC_scaffold_1 129773442 12927 + 233722169 [encoded data, 13902 characters]

a score=50428
s chr3           143606136 1854 + 160039680 ATATCTCATCTGTATGTCTGAAGAAGTCCCATGCTTTGTTATTCTCTGAAAGTTCTTCATCCCTTTTAAGACACTATTCCCTCAGAGTTCCTTCAGCAAATGGCTTTTG-------CTGGCACCCAACTTATACTTTTTCCACGTGGTCCTGCTTTTAGAAGTGTTCAGGGGATAATTAAATTAAAGCAGGCACTGTCTGCATCAGGCATGGATGGCACTGCCCTTAC--------TGAAGATAGACAGTAGTTTGAATAAAGCCATCTTATGAAGGTGTGGAGACATCAGTATTGTTGCTGAATGTGAAACACCAATTAGATACAAACTTCTTTCTAGTATGACCTATATTACATAGTGCTGCTGCTGCTGCtgatgatgatgatgacgacgatgataacgatgaACATGTTTTCTATTGAAATCTAGGACACAGGGGCTTGCATTTTTGGCTGAAG--ACagcttctcaaagcaat---catctatgctacattcaagatactctgattgtttccctgtcttctagttcatgttttaaa-tactgcttataaccattacattgatttcataccccaccaatgggtcatgatttgtagtttgaccaacacGGAGTCAGACCAAAAGTGTCTTTAGGAATTGGCTACTAACAAGAAATGGGATCCTATAAAAGATCCTAAAAGTTCTTTAATGGAAGAAAGATGACTATTGATTTG-GTCTGTGTACCCGTGTTTCATTCTCCTTGAGAATTTAAATTGCAAAGATAAATTCTCAGCTCCAGGTGTG--AAGAAAGATGCCATTGCCTCGTAAAACAGAAGTTCCAATAATGACATATTGGGCAGCAGGCTGGGGTACCCAGGTTCCTGTAGAACAAGTAATTATTGTGGAGATTATCCAATTGAACTCAAAATAGGCATAACTGTGT-ACAGAGCATGGTGGTGGAAACAGGGATGCAATTGCTTCTCTTTGGCTCTGATCCTGACTCACAAGAATCTTGGAAATATACAGCCATGTTATATTCTTCGAGCTCTTTTTGGCAACTCATAGGAACATTCAGGACTGAGG-CCCACTCCTATTGGACAGGTTGCTATGGCACTCTGATTTCCTATGTAACAAACAGCAGCCATGccttacttttgtagagcacttgacaatttattaagtgtttcaatgcgtattatctccagctcataacaatcctgggagataca-ctgggcaggtattTCCATACATTGTATTTATGGCCCTAATGTTATTTAAGACTTGCGTGTTTCCATTTTTAACATAAAGAGGGATCATTTTGAA-----ACATCCTGTTGGCTCACAGCAAAGGTAG---CAATGTGGAAAGTGCATGATGCTGTGCCACAGAG-CATGAGGTAAGAGCTGTGGAGTGCTAATTA-CAGGTGTATGCCCTTGAGAATGTCTCCCCCCCCACCCTACCCCCACCCCTGGCCCCATGATCTGTTTTCTAAGTGAG-GATATGCAAGTCATTATCCTAAGTAAAG-GTTGATGCTTTCTAAAGTAATGTggccttgagtgtcagagagcactggattcaaatcttggctttgacacaaactgtgaacttaggcaactcactgactatattttcttcatctataaaat-------------CAATATCA-------ATTGAAATATTCTTCTAATTGGTATACCCCATTTGCCTCCAATTCC---TAGTTTATTCCTAAAGCACTAATTTGAAGAGTAAATCTGGGTCTC-------------------TAAATATTTGTCCATTACATATGACATGTAT-TAAAACATCCACC------------TTTGCATAAAAGTGCCAACAGTACAGTACAGCGTTCCTCTCCT--TCTCCCCCACCTCGCTTCACCCCGCTCTCCTTTCTTCCATCATGGGCATTGGGCCAATGCTGGTTT
s HiC_scaffold_1 129786964 1803 + 233722169 ATCTCTTACATGTGTTACCAAAAAAGCTCTGTTCTTAACTACTGCCCTAAGATCCCACATTCCCCT-AAGGTAGCAATAGCTCTGCATTCTTTCAATAAGCAGCTGCTGAGGAGTATTGGTTTCCCATCCATAC------CACTTTGT---GTTTTTGGAAATCTTT-GGGGATATTTAAATTGAGGCAGATATAACCCACGTCAAGCCTGGGTAGCAACTCCCCCATCCCCCACTTGAAATTAGGTGAATGCTTGCATAAGATCGGCTTACAAAAGTGAAAAGACACCAGctctttctcaaaattcaatagaTCAAAGTGTTGTAAACTTTTTT-------------GATTGTAAAATACC-------------------------------------ATAAGAAAAATGTCTTCTATTGCAATCCAGTACTTACATACATATGTTTATGGTTGAGGTGAAGACTTCCTAAAGCAATACCTGTCTATAC------AAAGACATTCAGACACTTTCTCTTCCCcctagttcatttttaaaaatagggcttATGACCATTAAATTGATTTCAGAGTTTATCAATGGGTCATGATCTACAGTTTGACAAACACCCAGTCAGACCAAAGGTAACTTTAGGAATGGGCTAATAATAAGAAATGGGATCCTATAAAAGCCTCTAAAAGTTCTCTAAGGGAAGAAAGATGACTATTGATTCGAGTCTGTGTACCCATGTTTCATACTCCTTGAGAATTTAAATTGCAAAGATAAATTCTCAGCTTCAGGTATGTTTTTAAAAGTGCCCTTGCCTCGTAAAATAGAAATTCCAATAATGACATGTTGGACAGTACTCTGAAATACACAATTTTCTCTAGAACAAGTAGTTACACTGTGGATTATCAGActgaactccaaacagacataatcATGTAATAGACTA---CAGTGGAAATGGAAGAATATCAACTTTTCTTtggccttgttcctgatttgtgAAAATCTTTTAAACTGGCATTCATA----------------ATTTGGAGTAACCGATACGAAAATTCAAGTTTGAAGTCTCAATCCTACTAGATAAGTTGCTACAGCATGCTGGTTTTGTATATAACAAATATCAGCAATGCATTACTTTTCCATAGTACTTGAAAATTTATGAAGTGTTTTAATGCAAATTATCTCAATgtcataacaattttgagaggTGTATTTGGGTGagtattttcatgcattt--tttat---CCTAATAtcatttaaaactg----------attttaatcATAAGGAAGGATCATTTTGAAATGCTATATATTTTTGGTTAATAATAAAAGGTGACACAATTTGGACAGAATACTAGATTTGGCCTCAAAGATATGAATTAAGATCCACAGTGTGTGAATTATCAGATGATTTCCATTGAGACTGTTTCTAACTGTG---------------TAGCCTCCTG-TGAAATTTGTAAGTGGGAGACAT---AGATATTCTCAGAAGCAAAACACTGATGCAGT-GGAAGTAACATAACCTATAG-GTCAGACAGAAGTGGATTCAAATTCTAGTTTTGGCACAAACTTT------------Ctcgatt-ttatattttatttatctgtaaagTAGGAATTCCAACAAAACATCACTGGCCGGTTGAAATGCCCTCCTAATTGATATGCTGTAATTGTTTCCAACTgcctttaatttattttcatagtgagagtttttaaaattattcaatgtCACTTTTCTATTTGAGAAATCTTGCATAGTTTCTCACTGCATTTGAGGTAGACACTAAACTTTCAGCTCTGACTTTGGTTTTGCCTGGAAG--------GCCCTGCACGGCCTCGTTCGCCTCATCTCTCCAGCCTCACTTCCTATCACTCTC----TTTCCACTGCAAACAATTAGCCAGTACTGGGTT

a score=24700
s chr3           143609513 1732 + 160039680 TGCATAAATAAAGAATAATAGACATCTGCCAGGAATGTA--AGAGTGCCAGAGAGCGAAGGATTTTTGATATTC-----TAGGATTCAAAATGAACACTCACATGTT-------ACCTTGA--CAAGGGAAGGTAGC--------ACACACCTAGTAAATTTGGAACTGGTACAAGCACCATTT-CATTCTCAGATTTTCCTACCTTGCCACAAAGTCCTTATCTCTACTCAA-GCCCACTCCTAGGATTTGACAGTCCAAGCAGAGGGTACTCTTTAGGAGCTGGGAAGGAAGGAGTTAAAGAAATGTCCTTTGTGGCACAGCTGGGAGCCATTAACAATTAGGTTCTTGGACAGAACCCCAGCAGGAAACTGAGTAGG------------CCTGTGGCCTCTA-AAAGC-AAGGCTTGATTCACACTGAATGCATGCACCTTCTTTGCTAGGGAGCCCTCTGCGGAACCCAGATCCCTC-ACTAAGAATGAATAGCAGGTATTAGTGAGAAGCCTGCACCACCACACCTAGCTATAAATCATGGCTCTTAATAAGGGAGACTATGAGAACGATAGTAATTTCTAGAA----------------------------------------------------------------------------------------------------ATAGATTTTTAACACTGCATACGTTAAGGGAGCGAGGCTGACCTGATTTAAAACTCCTACTTGATGAGGCAACAGATTCACCTCAGACTTGTCAGCCATTTGCCTCCAGTGTCCTGGCAAGAGTTTTGATTTTTGTAGACATCCTTGCGAATGCAGTACTAGGAGTGATCCTGTACCAGAGTTGTGAGGTCTCCTGATTTCCCTCTCC-TTATCTGTTCCC--CAGTGTCAACAGGCCATCTTCCTAAATATTTCTGTTGTTC----------CTGTCACATGTTA-ACC-AATATTCATGATCTCTTAGTATTCTGTAACAGAACTCAGTGAATGACAAACTTGAAGAAGCCTCTGGTTTGCTTTGTGTAGCATTCAGTAATATTCTCTGAGAAATGTTTGGAAGATTCTAAGCAACCCTCATTTCTCCTACAGCCTACAG-TTCTCACAGCTATGTCTGATCTCTCCCGTACCCT-TGGATGTAAACTGATTACGTTCATTTTGCCATCTTCCTTTAGGTTGTCCTAGAGTTAGTCTGATCTCTAATGTATAAAGTATCATTTTCTACAAAAGATTAAAAATCCTCTGATGTGAGGGACACGGACCATATCTCACTGCAATCCTCCACATTGCTGTACCTAGTGTTGATTCTACCACAGTCCCATTAAGGCCAATGTT------TTATGAAACTGAACTGAGAACCCTCTGAGAAAACT-TCCAGGCTGCCTTAGAAGGCAGCAGGCTGAAGGAGCAAGAGAAGGTTGGTATA-TAAAATGGGAGATCTAGACTAAAACTTGTTTCTGAATAGGATCCTTAAAAAGACATATTAT-------ATAATTGAATGAAGGTGCATGTATGTAACCT---------------GCACCATTTGTAGTG-TTTTATGAGAC----CACACTAGGTTAATATGTGAGTTGGAACCATTTCCTAATTTGATTATCAGCACTACCAG-CTAGCACAATGCTTCACACTGTCGAGGAATTCAGCCTTGTTTTCAATGAATAAATAAATGAGA-AGGATTAGTG---AAGGATCCATGATAATAGTAATAATCACCTAGATTATTCAGGGACTATGTCCCAAACAAATGAG-GGACATATTAATTGAATGACAAAAATGCCTCACAT-GATGAGTAACACTGTTTATGCAAAAGTTATGACCCAGTTTACCTTAGGGAAAGAAAAGGAAACAAAGATTTTTTTTGTTGGTGG
s HiC_scaffold_1 129788772 1680 + 233722169 tacataaataaa---taaaaaatgccaGTCAAGAATATAGCAGAGGGCCAAAA--CAAAGGAATGTTGGTGCTGCTATGTAGGATTCAGTGTAAAGATTCACTTATTCATCTCAATCTTAAACCAACAGATTTTAGTGGAGATGAATATATGACATGGCTTTGGAACTGGTGAAATTTGTGTGTGCTTCCTCGAATCTTCTTACCTAGCCATCAACTCTTTGCCACTACCAAAAGCACACACTGGGGACCTGACTTCTAGGGCACAGGATGCCAtttggcagccaggaaggaaggaGTTAAAGAAATGATGTTTATGGCACAGCTGGGACCCATTAACAATTAAATTCTTGGGCAAAAACCCAGCAGGAAGCTGAAGAGGAGCTGAAGAGGCTCAATGGCCTCTAGAAAGCAAAAACTTGATTCAGA---AATGAATGAGCTGTCTTTACTATGT-GCTTTCTGGGAAACCAAAATTGCTCAACTGAGAATGAACAGCTATTATTAGTTAAGGGCCTA---TACTATGCCTCGCTATAAATCA-GGATTCTAATAAAGGAGACAATGAGAA----AGTAATTTCTAGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA-----------------------------------------------------CTA---------------------------------------------------------------------------------------------GCAGTTCAAGGA--TGTCGTGAAAGACAGTTTCAGAGTCTCAtgattttcctttatgttttctgttCCCCTCATTTTAATGATCCCATCTTATTACttgtttctgttgttctctttctACTCTAGCAGAAGTCACACCAAACACTGATGGTTTCCTCATATGCTATGATAGAACTCAACTCACTAC----------------------TGTTGTATGT---------TGGTGCTTAATGAG-ACTTTTTGGAAAATTCTAATCAATACTTGTTTCTCCCACTGCCTGTAATTTCGAATATGTGTATTTAATCTCTAATCAACCATACAAATACAAATTGATCATATTCACTTTGgtgt-----tttatgctatttttgaGTGACTCCATTGCCTAATATTtaaagaattgcctt-tgctaaaTATTGCAAGCCATTTGAT-TCATGGGTATGTACAGGAT-TAGTTTTTATCCTCCATACTGTTCCACATGGTGATGTTTACCCAACAGACCCTTTAAGGGC--TGTTAAATCGTTGCAGTACTGAACTAAGCAGTTCCAAACAAAATTGTATGGGGTGCTTTAGAAGTTAATAAGTAGAAGGG--CACAAAAGACTTGCATGCTGATATAGGAAGCCTGGTTAAGAAATCAGCTCTGAATAGGGTCCTCAA----GCCTCTtatgaaataaaaagtcaaatgcaagagTATATATGTAATTTATGTGTATTTTCATAACATAATTCATACTGCTTTCACAAGACTTAACATAAAAGGT--GTATGCAATTGATAACCATTTTCTTACTTGATCACAATCCTTATTGGTTTAGCACAAG-----ACAC--TCAAGG-----AGATTTGT--------------TGAATGAGATAAGATCAGTGATCAGAGATCAATGA------TAATAATTGACTAGATTAGCCAGGGAAAGTTTCCTAGGTAAATGGGTGAAGATATTAATTTAATGGTGAAAACGGAAAAAGTCAAAGAGTGAGCCTTCCTAGGAAAAAGTTACGACATAGGAAATCatgg-----gaaagggtaagaaaaATTTTTCTTAGGAGTGG

a score=14316
s chr3           143612263 625 + 160039680 TGGGATGCCATGAAGAAGAGGAGAATAAAAAGAGAGTCAAGAGCTGATGAGAGAGAGTGGTCACGAGTTCATGGTCAAAGACACTGGTGAGCTTTGCAAAGGTAAATAGCCAATAGGCTTAGGATAGAAAATAATCTTGGTTGGCATAGT--GATGTTTGAGAGACCACCAAGAAAT--------------GAGCTCAACTAGCGGTAAAACAAACACAGTGTATTATTTGGATAGTCTTAGAGAAGTAAGCAGGTATGAACA-AGGCTCA-GTTTAGTTAAATATTGTTAGGTTGTGTTAGATGATGGGGCCTAGTCATACAGATTTCTGTTATGATAAATTGAGGCTG---------------------------------------------AAAGGTAAAACCACTGACCTCAAAGACTAGGAAGGGATAATTTTGTTCTCTTAATAATAAGGAATGCTCCAAAGGCTGAGAATACACAAATGCAAGATGCCAGGACTGAGTTGGATAAATTTTGCAAAAAGGACGGTCCAGGTAATGACTGGGCTTTGGACACTTATGCTAATAAGTCCAACCCCTCACCAGCCAAGCAAAGTGCTCTGACCATTTTTCCATGGCTGAATGAATAAGAGTTTAAAATTTCTAAAGAAGAGTCTTCCTACAATTAGGCCACATCAGGAGTGAAA
s HiC_scaffold_1 129790407 650 + 233722169 TAGGAAATCatg--ggaaagggtaagaaaaATTTTTCTTAGGAGTGGGAGGTAAGGACAATCATGAGTCC-----TAAAGA----GTTGAGCTTTGGCATGGTAAATATAAAACATGCCCATGGTGAAGAATAATTTAAGTTGTTAGAAGCAGAAGTTTGAAAGATCATTAGGAAGCTGTAGGACCTAAGCGAAATCAACTCAAAGTCAGGCAGACATGAAGCTTTCTTTGGTTAG------------AGGCAGATATGAAAAGAGGATCTTGTTTGCCCTAATGCAGTTAGAGAGAATCACTTCCTGGGACCTACTTGTACAGACTTCTGTGATGTTAATCTCAAGCTGTGAAGTTCCTGGAAGATTGGGAAGACAGTTTATTGTCTCACTTTAGAAGGTGAAGCCATTGACCGCAAAGCCTAGGAATGTGTTACTTTGTTCTCTTAACAATATGGAACTTTCCCACAGCTAACAGTGTACACATGCAAGATGCCTGGACTTAGTTGAAAGGGTTTTGTGAAAAGGATGGTCCAAATGTTGATTGGAC-TTGGAAATATGTG---------CCAGCTTCTAACCAGCCAAACaatgtcatttaaatattttt-cacagcTGGGT---TAGAACTGTAAAGTTCAGACAGAAG-GTTCTCTCATGATTAGGTTGTGTGTGGAGTAAAA

a score=160656
s chr3           143613794 5535 + 160039680 [encoded data, 6151 characters]
s HiC_scaffold_1 129791122 5842 + 233722169 [encoded data, 6151 characters]

a score=50085
s chr3           143620577 2176 + 160039680 AATAATACTTTATACATAACATAGATTATAAAAATATTC----ATAAGTCCATTGTATAAATTAACTATTAAATACTTATGTTTCTCTC--CAGAAGCAATCATTACCATTAATTTTCTGTTACTGTCCTCT------ATTTCCATTAAAAAGCAAAATGCAACTTATATGTGCTTCTACAAATGATAAATGGAAATATTTGCTATGGTTTTAGAATGGATGAAATGTTCTGTTTCTTGTTTTCCTTCTGCTCAGGGGCTGAATAAT-ATGCAAATGAGACAGACAGGTTGATTACTTTCTGAAAAAATTATAGTATTTGTCATATGAATATTTTACATGTGCTTAGTTATGTATTTCTCTG--AGCTTTTAGGTAATTACTTCTCTCCTTTGAAATAATCCT--AACATAGACTATGATAGCTGTCTT----ACTATCTCCTCCTGTCAGAGTCTCTTTCCATCTTATGCACATAAAAAATTTATTATTGAACACT-ATGTATGTAGTTTTGTCAATTTCTATGAATCTATAATTAACTGAAAATAAAAATTTTAG-CCATTATGTAGTTTTGAAGATTCTTAATTGCATTCTTCAAAT---------------------------------GTTTTCACATTCGACGAGGGAAAGGACTTCTTATGTTCTATTATCCACTTAGTTAATTCTTTCTTTAACTACATCCTTTTACCTGACTCTTTGAATGTTT-TAAGCTGACTACATTATCTCTATTTATTTGT--TTCTTTTCATGTCTACACAATTTATTTCTGTCCTATGGTGTCATTGGTACATGTTGTTTCGTATCTCAAACTCCCTGGGAGTTGAATTTCCTCATTGATATGCATTCTCCTATTAATCTAT----------------------------------------------------------------------------------------------------------------------CAATTCTAGCAGAATCCTTTCTATCTTCTGAAAGCTTTCTCCAAGGCAATGGT---GATC-CAGTGT--GAGTGAGATACTTTTGACACTGCTACATAATCA-ACCCTACAACTTTCTAATTAATGTATCTGCTTTGTATTTTTCCATACCATGTGACTCAAATTC-AGCCTAATTCCCAAGTGTGGATTTCCATCTATAATAGGGTA---TTTCTATTCAAGGGCCCAAGTGGGCAGCTAACTTTAGGCATAAAGCAATGTGAAAGGTAGAGATGGCTGAGTTCCTCTT--TGGGAATCAACCT-TTCTCAGTTCCAAAAAATGAGACACAGGGTCCTTGTTTTGCCTCCTTTCATTAACTGGCTGTGGTTTGAGCTAATGTCAGCATGGTACACTTTAAGATCACACCCCTA-AATATTGTTTCACAAATGATTTGATTTTCAATTACTACTAAGATTTCTTAAAC---------------------CTTTTTCTGCATTCAACTTCAAATTCAAACACACATTACTATACATGAAA---------TATTATTTTATTTTGTATTTCTAAGTACTTGGAACAGAAAATAAGGGTGTTTTAATGGGTTTTAACATTACCAGTTTCTCTCAGAATCT--TTTATATTACCTTC---CATCTATTCCTGGCTTTATCTGAGTTCCTTTTAATCTTTGAAGGCAGAAACCTTAGCTCATTAAACTTTGAATTCCTCATGAGACCCATAATGGTCTTGGACCCAGAGTAGATT------------------------GAAGGGTTAGATGACTGGATAAGCATTTTTCTTACCACACCCCGCTTTTGATAAATATCTCTATTTGGACATATAATTCATGCAAGATTTATTATCTCTAGATGTCTGAGATTCTGTTAATCACCTTGTCTAGTATCCAAGATGGATAGTGCTGAGAAGAAACACAACAGAACATTTAGTGAGTTATTAATTCCGTCCACTTCCCCATCCACACCACAGTTCAGAAAGTCTCCCAGTTGTC----TGAGAGCAAGCTAGAGACAATTCTGCTCAT--GTTAATGGTA----GATACCACACTTCACAGCTGCAAAAGGAAGGGCTTTGCCAATGGAGAAGATGAGCCCTCTGAGAGGGAGAATGGGGCAAAATGAAAAGGATGTGGTGAGTGACCACAGGGAAGCAACAGGACACAGA-------GTCTACTTCTAATGGTTGAGAAATTTAACTTGAATTGCCGTTGTTTAGTGAACTATATTTCCCGAAGTGCTGCCCCCCTCCCCTCAGAT---TCATTGTCAGAAATTACATT------------AAAACTTCAGTTCTAAGCCTGAGCTGAAGTTCTCTTCTGGTTTCAGTCATTTCACTTTCTCCAACCATCCTCAGCAGGTTCAAGATCATTTTGAACCAGGGAATGCCTTC
s HiC_scaffold_1 129797447 2345 + 233722169 AATCATAGTTTCAGCAAAATATA--TTACCTATATATTCCTTTACTAATGTATTAC-TGAACTAATTagtgaatatttgtttttctctttacaaaGGCAGtcattattgttgattttatgtGACTATTTACTCTACATATTTttgtagaaatacaaaatgaaac----atatGTTTCCATAAACACTAAGTGACACATCTTACCATAATTTTATAACATACctactgttttgtttctt----ccacacCAATTAGAAA-TGAGTGATTATGTAAATGAGACCGTCACGTTCCCTATGtt----gaaaaatacagtttttaaaatatgaatattctaCATTTAGTTATTTATGCATTTCTCTGtgaacttttgtttatttatttcctttgtct-----AATCTTGAAATATATACTGTTATAACTACCTTTTTTACTATCT------ATTAAAATCTCTCTACAC----TGCACTTAAAAGTGATATTATTTGACTGTGAGGTATTTTCTTTTGCAAACTTCTGTGAAtctataattaatttaaaacaaaaatttaaaactatcatac-tttttggagatttttatt---gtttttcaaattgcTTGATTGTTAGGCCATTTGTTCTCTTCTTCATTGCCACATGCTCTTTTGGAGAAGATTTCTGCTGTACTATCTTCCAAGTCATTTATTCTCTCTTTAACTGTATCTTTCCCCCT--CTCTTTAGATTTCTGCCAGCTGACTACTTTATCTCcaattatttttactcttttttatgtCTACTTGTTTTTTCCTTGTGTCTTAACTTTGCTATTATGAATTATCTACCAACTGTAATTCCTTGggcatatatttttctcttggttactttttttttttttcatctttttcattgagcacactttgtagcccaggctaatctcgaactcacaacaaccctcatgcttcagtctcccaagtgctgggaatacaggcatgtgccaccacgcccggcaacaTTAGTGTTCATTGTTAGTAGAGTGCTTCATTGCCTACAATCATTTTCTCTCAGG-ACTGGTATGGATTGCAGGGTCCATGTGGGCTACTTTGGGAATTGCCATGTAGTTAtactttactattttttaattaatgtctCTGTGCTATGAATTCCCACACCACATGGCTCAAATTCCACCCTAACTCCTGAATATGAACTTCCTTCTGTCACAGATTACCATTTATATTTGTGGGCCCGAGTGGGCAACTAAATGTAGGTTTGAAGCT--------GGTAGAGATTTGGACATTCCTCTCCATGGAAGTCAACGTGTTCTTGGGTCCCAGTATT-------AGAGTATTTAACTT------CATCATTA--------CAGTTTCAACTATTAGCACCCCA-TGAATATTAAAACCACACCCtggtagttttattttataaatcatttaacTTTAAATTACCACTAGGATTTTTTAGATTCATCTGGTATGTTGCGATTTCCCTTTCTGTATTTAATTtcagat----atacatat----atacatgagAGAAAAAAACTGCTATTTTACTG-GACTTTTTAAGCATATGGAGAAGAAGA---GTGTGTTCAATATGTTCTTAACATCACTACTTTGTTCCAGATCCTACTTTATATTACCTTCTACCATGCATTCCTGGAGTTATGtgagatttctttccttttttaaagcagaaattataGCTCATCAAATTTTCAATTCCTCATGACACCAATAATATTCTCTGGCCCAGCAGAGATTCCTgttgaaaaaaattcatttgtggAAGGATTAGATGACTGgacaaacatttttctttccataccCTACCTTTGATGAATACCTCTATTTAGACATATAATTCATGCAAGATTTATTATCTCTGCATGTCTGATATTCTGTTAATCAGTTTGTCTAATATTAAAGATGGATAGAGttga-ataaaatacaacaaaatatttaGTATGCAATTAATTCTCCCCACTCAAAACTCTACATCATTGTTCGAACTGGCCCTGTACTTTCCACTTGACAGTGGTCCAAAGAGAATTTTGCTTATCCACTAATAGTACAGGGACATTACATTTCACATTTAGAAAAGAATGGACCTC-TTGACTCACAGAAAGAgccacatacaaaaataaatgagaca----------------------------tggaaagcaacagaatgaagaagtaattatttctttttagtggttgcaaaatttaatttgaataatTATCTGTCAGTGCTCTGTATTTCCAAAAG-ACTTTTTTTCACGTCTCAAATACCCCTTTTTCAGGAGTTATACTAAAGACAAATTGAAAAGTTTGGTTTTGA---TATGCCGCAGCTCTTGGCTGTTTTCAGTCATTCCATTAGTTAGAATAATGCTTATTTGGCTTAAGATTGCTGTAGCCTGTATAAGACCTTC

a score=83732
s chr3           143622904 2601 + 160039680 TGGGATTCCATAGCCTGCTGCCTGCATCTACTCTTTGCTGCCTAGGTTGACAAGTGGCTATTTGGACTATTACTTGAACGGCTGCACCATCGATCACAGAACTAATAATTATGCcaa-----caggtataaactggaattgtccggagcaaactgggatgtatgaccacgctaGCTATTGACTCCTTTACCTAGTATTTTTGCCTGATATTTATAGCTCAGTATTTTTCTAACTGAAGGTCATATTCTTTAGTAATAACCACCACTTACAGTGCACCCATTATAGAGCAGTCTCTGTAATAAACTAC---TTtttgacagatgaggaaatcgaggctgataaattaaatggctta-gccaagaccacccagcttcggctcaggaggcttaagctttggatgtgagtctctctggccacagtacaactttgctctttGGTCTTACAGTT--CTTATTCCAAACCACACCATAATGTTATACATGGTCCATTTCTAAAATCCATTTTTATAAAAACCAACGTGAAGCCTACGTTAATATAAGGCAGGCACCTGCTAGGGTTTGGAGACATGTAGAGGA-------------ATGGGAGAGATTTCTCACATG-----------CTGGATTTTCCTTTCTCACTAGGGCGTTCTC-TAGATTCTGCAGGCCCCCTTTATCTCTTTCTGTCTGTGACACCCTCACACTTTTG---------TATCCACTGTTCTGCTCACTCTTAAAAGCCCTTTG------------------AATATCTTAATTAGAGGAGTCAGCG-AGGTGTTGGTTCAGCTCTTCCCTGTGTTAATGTCTAGTGCTCACAGCAATTTGACACTCCACACCTGATGACTTCTGAGGTTCCTTGAACTGCAGTTGTTATGTTTCCCCAGGTTGTTGTAAGGTTTAGCACTTCCAGACAAGGGTGTAGCCCCAGGGGTCAGGCAAGTTTTTCTAGGGGTTAGAGAACCTCCAGGCTCGCTTTAGATTAATCCTCT--CTGTTAGTGGCTGTTATTACTCTTACAAGCAGGGCAGCCTCCAGCACCAGGGCTGCCCACCAACAGGGAAAAGCTCAGGGGCCTGGCTCAGGTGACTACAAATTCCAGGTGCAATATGGGAGTGTGTTCAAGATAAAAGACAAT-GAACAGGGTAGGAACTGTGAAAAATCTATTGTAAGGGAGATGAGAGGGGTGAGATCAACTCAGTAAACTGTCAGCTCATTTTCTTACTGCACTATCATGAGCTTTAACtaaaaaaaaaaaaaaaaaaatCTGTTTGATCTCCTGTGTTGGAGATGTATTTCAAGGCCTGTATCTGTCACTGGAATCTACAAAGTGTGCTGCAGCTATAAATCTCTG-CCCTGAATGTACACATGCAATTATCTCAGAGAGATCTGGCTTCCATAAAAATGACAATTGTCACTCCTGATCTGCTTTCCTTCTTATAAATATAATGTTTATGTTTAAAAATAACTTTCGAGTGATAAGTAACAGAGAAATTTATGCCATTATCACATTAAATGTCACACC-TTTAAATGCCG-TTAGCAGTC------AGGAAAGAATAATCCTTTCACTTCAACTTCCATGGCTTCCAGAAGAGCTTCTCTGAAGAACACCAGTGGAACTCCTTTGTTAATTAAAAGTGCTGAG----CACGAGTGCATTGAAAGCATTGTAGATTTGCATGCACCATCACTGTGACACTATGCTCTGTTATTAA--------------------ACAAGCCTTCCCTCCAAC-TGGACATGCTCTGGACCAAGAATTGCCTCACTCTGCCACTGCTACGGTAGGTTTTCCAAACCA--TCATGTTCTTATTTCCTAGCTA-----TATAGTAGAGGACTGGATGTGATTCTCAAATGTCAAAGTCTATACCAAAAATCCCCTTTTCCAGTCTGGT---ACTGGCTAGTAGTGGAGATTTCTCTCAGAGGTTATTCCATTCCTGTAAGTCTGACCATGTCTGCAATTGCAGAACCAACATCTTGCTTATTTCTGTCGCTTATTGTAGATAAGTCTAATAAATATTCACTCATG--AAATTGCTACCTACTTTGGTAGTAACAACAATAATGACAACAACAATGGGTCACAAAGAGTACTCATGAGGCCATGACTCATTGCACTTATACAGTTACA------ACACTTTATATATTTCTCATT-AAACTCTG-ATGACAGATGCTACAAATGACAATTCTGAAGCCTAAGGAAGTTTAGTAACAAGCTGGATCCTTCGGATGAGGTATGTGGTAGAGGAAGCCACAAATGTGGTGTCAGTTAA---CTATTCCCTCTTCCAGATGCTACTGTATACAGCAGTAAAGGTGTTC-----CTCTTTCTAGGTTAACTTACTTC--------CAGTG-TAGTAGCAATCGCAGTGTTGGAGACTTTATTTTGGACTTGCTATTCTGAGTCAAGCTGGCCTCAGTCCCCTGGTCATACTCCTCTCATC-----TCTTCCCCAGA-CGAGAGTTGTTATTCTTCTGATGATAGTGATTAGGCAATAAACTACCAGAG--TCAAGGAACT----CCTGGTCACATGGCACCAGGTGTGCCATCCAGAGGGTCTGGAGCTAGTTCTGTCATGTTCCAAAGACTCTTCCCTTCC---------TATTTGACTTTATTTAACTATA------TAAATGAATCCATGGGAAGAATTTGTTTTTGTTATTGTTCCTTATTTCTTGTGAAA
s HiC_scaffold_1 129800350 2610 + 233722169 TGGGACTC-ATTGCCTGATCCCTGTAGCTGCTCTCT-CTGCCTTACAGGACCACTGACTGTTTGGGCTGTTAGCAGCATG------TCACCTATCACAGACTTAATAATCATGCCAAGAAAACAGGTATAAGCTAGGGCTGTCCTGAACAAATTGGGAT---------CACT--TTGTCAACTGCATAATCTAGTATTTTTGCCTGATGTTTATAGCCTAGTATTTTTCTAACTGAAGGTCATAGTCTTTAGTAATAACCACCACTTACTGTATACCCATTATAGAGTAGACT--ATTATGAACTACCTCTTCTTGACGGATGAGGAAATCAGAGCTGATAAATTAAGTGGTTTTTGCCAAGACCACCCAGCTTTTGC--------------ATTTGACTATGATTCTGTTCGGCCACAAGACAGCTATCCTTTTT----TTGCCATGAACTTATTCCTTACCACACTAAAGGGGCATATAAATTCCATTGCTGTAGGCAATTTTTA-------CAATATAAAATCTTCCTTAACCTAAGTGGTGCATTTGTTAGGACTTGGAAACATTTGGGGGATAGATTTTCTTTGACAGGATAAGGTT-TAACTTGAACAGTTGGTTTTGGATTTTCAATTCTCACAATAGTATTTTCCTAGAAGCT-TGGCACCTGTCTATTCCTTTCTCTTTATGATGCCCTTCCcctttttatccttctttatccaCTGTCAGTCTCTCTGTTAAAATTCCTTTGCATGACTGAGATTCCACGAATCTTTTATTCAGAGAAATAAGCTTAGGTGTTGATTCAGCTCTTCAGCATGTTAATATATGGTGCTCAGAGCAATCGGACACTCTTCACCTGATGAACTCAGGGGTTG-GTGAATTGCAGTTGTTATGTTTCCCCAGGTTGTTGTAAGGTTTAACACTTACAGACAAGGGTGCAGCTCCAGGGATAAGAGCAGTTTTTCTAGTGCTTAAACAACCTCCGGGCTTGGTTTAG---AGTCCTCTGCTTGTTACTGGCCCTTTCTACTTTAACAAGCAGGGAAGCCTTCAGTGCCAGAGTTGCCCACCTACAAGGAAAACCTCAAGGG-CTGACTCAGG-GGCTACAAATTTCAGGTGCAA----------TGTCTGAGATAAGAGACAATAAAATTTAGTTGGAATTGTGAAAAATCTATTGTACAGGAGGTGAAAGGGGAAAGATTAACTCAGTAAGTTGTCAGCTCATTTTCTTACCATGCTATCATGAgccttaact----------aaaaaaaaatctgtttgatCTCCTGTGTTGGAGATGTATTTCAAGGCCTGTATCTGTCACTGAAATCTACAAAGTGTGCTTCAGCTATAAATCTCTATCCTTGAATGTACACATGCAATTATCTCAGAGAGATCTGGCTTCTGTAAAAATGACAATTGTCATTCCTGCTATTgctttttttatataaat---atgtttatgtttaaaaattaccTCCAATTGACAAGTAACAGAAAAA--TATGCCACCACCATACTAAATGTCATACCATTAAAATGTCTCTTACtagtcaagagaaagaaaaatcaatcctTTTacttaaactttcttttcttccag-tGGGCAACTCTGAAAGTTATCAGTAAAAttactttataaattaaatataataagatTCCACAGG----TTAGAAACAGCATGGATTTTTAT----CCTGATGGTGATATCCTTTCTGATTATGAGTGTTGTGGTGGTCTGAGACCATGGACCCTCCCTTCAACGTTGCCATGCTATTGTTCAAGAATTGTACAATCTTGCCAGGACCTGAGTGAGTTTTCCAAATCACTCCAAATTCTAACTTAATGACTATGCTCTGTATTTGAGAACtggttttgcttttcaaatataAGAATCTATACTAAAAATGCATGTTACCAGCATGGTAGAACTGACCAGTTCTGACAA--ACTCTCAAGAGCT-TTCCATTTATATAAGTCAGGTCATGATT----CTATGGGATTAAGAACTCTTCTGAGCATTTAGTACATTGTAGGGA--TTTAATAAACACTGGTTATTGCAAGAGTAATGTTTATTATGACAATAATATCAATA--GGTAACA---------TACATGGAATGTTTATTAGCCCTGGACTC----TATTCTCAAAGCTGCATGTGGGTCATCTTAC-TGTTTCTCATTGAAACTCTATGAGATGGATATTAGAAATGAGAATTCTGGAGCCAAGGGAGGTTAAGTAACCAGC----------------AATATTTGA-----------ACATCTTTTGCCTCATCCAAAGCCCATCTTTTCTGCTAAGCACTGTTATA-----CAGAATGggtgttttcatgttttttttatcttaactAATCTCCCTATTGACAGTGATAGTAACAA--ATAATGATTG-----ttagttt----ttgaagttctgtatcaaacTATGTTAGCTGTGCATgccatatttttctcattttaaattttcaccagCTCCAAAATTATTATTACTCTGATGATACTGATTAGGTAATGAgctgtgagagaagtgagaaactAGCCCTAGGTAGTACAACATATAGAATGTCAAATAAAGGGTCTGAATCTAGGCCTATAATATTCTGAAGGCCATATCGCTCCCCAAACAAATATCTTACATGGTTAAACTATGCCTATTTGAACTAACCACATTATACAATTATAATTTGTTCCTGTTTCTTATTTGCTGCAAAA

a score=113494
s chr3           143626172 6021 + 160039680 [encoded data, 6524 characters]
s HiC_scaffold_1 129805295 5529 + 233722169 [encoded data, 6524 characters]

a score=5846
s chr3           143627794 457 + 160039680 AAGTTTATGTTCAAATTTATTGTTTTCTATTTAGG-CAGAA--GATCCAGGTTGGACTCCTGTCTTAATTCATTTTGTCACTTCTacagaatatctgcaactggatggtttataatgaacagaagtttattt-------ag------ttcatg----cttcaggaggccaagaactccaaacatcacggcca--tatctggtaaggaattctttctgagTGAACCATGACAggaaaggggaaggcagagggagagcagaaaagagaaggaaaggaagacagggagacatagagaACCTTTACTTATCCCTTTAGGTCTGGAATCCACTCATGTGATAATTCACCCAGTCTCACAGTGATAGCATTAGTTCATTCTCGAGAGCAAAGCTCTTGTGACACAATCATCTCTTAAGAGTCCCACCTTTCAACACTGTAACATTGCACGTATAGTTTCT--GATATGAACATTGAGGGACATCTTC
s HiC_scaffold_1   1919348 415 + 233722169 AGGGTTGTATTTgagttttctgatttcaaaacagaacagaacaaaacaaaattagccAACTGTCTTAGTCCAGTTTGT-GCTGCTATAAGAGA-ATAAGATTAAGTAATTTGTGGAAAACAGTGATTTATTTCTCACAGAGATATTTCTCATGTCTCCTTCTAAAATCTGGGAAGTG-AGAGATGGAGGCTGAGCATCTTGTGAGGG---CTTTGCTACTGCCTTATCTCAGGGAAGAAAGAGGCAGAGTTGGTGGGGGTAGGGGA-----------------------------------CTTGTTCTTTTA--TTTGTAACCCACTTCTG--------------------CAGTCATGGCATTGATCCATTCCCGAGGGCAAAGCCCTTGTGATCTAATCACCTTTTAAAAATCCTCC---TCAACACTGTTCCTTTCAGGATTAAGTTTTCAGGATAGGAAATTTGGGGGACATTTTC

a score=4540
s chr3           143628002 210 + 160039680 Aggaaaggggaaggcagagggagagcagaaaagagaaggaaagga-agacagggagacatagagaACCTTTACTTATCCCTTTAGGTCTGGAATCCACTCATGTGATAATTCACCCAGTCTCACAGTGATAGCATTAGTTCATTCTCGAGAGCAAAGCTCTTGTGACACAATCATCTCTTAAGAGTCCCACCTTTCAACACTGTAACATTG
s HiC_scaffold_1 209469254 199 + 233722169 aaaaaaaaaatagagagagagagaacgaacAAGAGCACACAAAGACAGACAAGAGAAAGCTGAGCTCC----------CATTTGTGAC--AAGCCCCCTCTCAAGAGAACTAAACCAGTCCTGCAGTGACACCATTAATCCATTCAGGAGGGCAGATACCACATCATCTCATCTCTTCTTAAAGGTCCCGCCTCCCAACATTGCATCAGTG

a score=6170
s chr3           143628002 201 + 160039680 AggaaaggggaaggcagagggagagcagaaaagagaaggaaaggaagacagggagacatagagaACCTTTACTTATCCCTTTAGGTCTGGAATCCACTCATGTGATAATTCACCCAGTCTCACAGTGATAGCATTAGTTCATTCTCGAGAGCAAAGCTCTTGTGACACAATCATCTCTTAAGAGTCCCACCTTTCAACACT
s HiC_scaffold_1    388979 197 + 233722169 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggagagagaaagaaagtgagagaGCAAACTTGTTTTTGTAAC----AAACCCATTCTTGAGATAAGCAACCCTGTCACACGATAACAGCATTAATCCATTCCTGAGGGCAAAGTCCTCATGATCTCATTACATCTTAAAGTCCTCCTCTGTTAACATT

a score=5081
s chr3           143628089 166 + 160039680 TGGAATCCACTCATGTGATAATTCACCCAGTCTCACAGTGATAGCATTAGTTCATTCTCGAGAGCAAAGCTCTTGTGACACAATCATCTCTTAAGAGTCCCACCTTTCAACACTGTAACATTGCACGTATAGTTTCTG--ATATGAACATTGAGGGACATCTTCAAGC
s HiC_scaffold_1  19760009 168 + 233722169 taggaaccTCTCTTGGGATAAGTAACCCACTCCTAGAGTAGTGGCATTAAACCTTTCATAAGGGCAGAGCCTTTGTCATATAATCAGCTGTTCAAAGTTTCATCTCTTAACACTCTTTCATTGGGAATTAAATTCCCAGCACATGATCTTTGGAGGTTGTGTTCAGAC

a score=4019
s chr3           143628134 128 + 160039680 ATTAGTTCATTCTCGAGAGCAAAGCTCTTGTGACACAATCATCTCTTAAGAGTCCCACCTTTCAACACTGTAACATTGCACGTATAGTTTCTGATATGAACATT---GAGGGA----CATCTTCAAGCAGTATCA
s HiC_scaffold_1 229132021 133 + 233722169 ATTAATCTATTGTTGAGAGTATAGCCCTTATGACATAATCACCTCCTAAGGGTTGTACCTTTAAACACC-TCACAATGAAAATTAAGTCTC-AACATGCATTCTGCAGAGGGGTACTCATCCTAGAGCAGCAGCA

a score=36168
s chr3           143632598 1840 + 160039680 TTCTTTTGTATCCACCTC-TCCATCTTAACTTTGCCTCTTGCTACAAGCAGCATTGATTCATTAGTAACCA----AAAAATACTGTGGGTTTGCATGTACAGTTAAA-----------AACAGCTTAGTATAAAAAATAGTTTAGAATAGCATAGGTTGCTAAAGAATTATGCTC-TTTCTAAACTAAAAATCTTCTCACACTTTCAATAAAAGCAGATCTCATTCTATTTAATAGATCGACCTTTATACCAAAAAGGAAAAAGACAATATAACAACAAAATAAATGAACTTGTCACCACATTGGCCAATTTATTTTCCTGGGGCACTGGCTTTCCTCAGCTTTGTATTTAACGGGAACTTGTCTACTCTTCCATGTGCTTCTCTGTACTTTTGCCCTTTCGCCCAATCCATTCTATTAACAATATCTTTCTTCCTCTCTTTCCAGAAAGATGCGATTAGGTTCTTATCTCGCTTTTTTAATGTCTTTCTGCTTTCTTAATTTAGGTCAAAACTACAGCTTTGCAGACCTGGGCTTTGTCCTGGACCATCTTGCCACATCTGTGGGTGGAGCCACTTGCTAGACCACAAGGTCAATGCCTCCTAGCTGTATGTGGGGCATCCCCTTTGACTGACCCAAATTGGAAACAATTTAGACTTTGCTTGTGGCCTTTCCACCAACATCCCCATTCTATTTCTGTGTGTTCTCAAGTCCTCTTCCCCTCAGGCAAAGATAGATGAGAGTTACCACTTTTTTATTGTCATGGTGCCATGGGGTGTTTTATTCT----------------------------------------------------------------------------------------------------------------------GCAGAT-GACAGTCTTTCACACACCTGTGAACACACAGATAAGCAGGGCAGTGAATAAAAACTCCGTTCTTAAAGGCTGAGATATGGCAGAGACCCAGCCATGTGGGGCTGTGGGCTTCCATCCCAGGACAGCCTCTTTCACTCTTTCCTCCAACTGCTTGTGTAGTAAAGTGTCATTTTAATGTTTGATTTTTACAATTGTTTATTAAATTCTGTGTGAAAATGACATACTACAGAATCCATCTTGAGAACCAACGCAGAGCCAAGTAATCAGTGAAATAAGCCAAGTTCTGAGGTTGA---------------------GTCGCAAA-------TAGAGTGCTAACTCTCAGTCGGGCACATATTTACACAGTGACATTAACACTCTAACGAGCACTCTAGTCCTGTGAGAAAGGAACAGTAGAAATGGCAGGTGTAATTTTTGAGGACTATGTTGGCCAAATGACAATCT-------TACATTTGAATGATGGA----AAGGGAGGCAAGTTATCAAGTTGAACAAAACATGTACAATACAGAATAATGTGGAAAGAAGACA--CAAGAAATGAATGACTGGGAAATCCC---ACTGGTTAGCACAGGACTCGAGATGCTCTAGGTCATGGCATGTTCACTCACTCCCACTAAATATCCCACTGGTTGTTTGATAGAGTCAatatatatatatatatatatatat-atatatata-tatatata---tatatatatatatatat---------atatCTTGGACTCCTT---------TATGGATA------GACTCTTTATAATATCACTTGTGCATGCATTCTCAGCTGCAGAACTTTGCCTTGCCTGCAAGCAAGCCTCAAATCACTTCTGGAACACCTTCGCAGACTCTTCTTCAGGTCTCACAAAGCACTTT-GTATGACACAAATGGGACACTCAGGTGATTCTATTATTCTG-----ATTTTTATCTATAGTTTTTAGATTCCTGACTGGTACGGAACTA-----CTTCTTCAATAATAAAGCACACAAAAGCCAACAAGCTTAAGGTTAAGGCACTTTATTAAGTGTCTAACAAATATTTGTATATGAAAGATCTGAAGTAAGATTGA-AATTTTTAATTTACAACAGGAATAAAAGGATAGAAAA
s HiC_scaffold_1 129810859 1875 + 233722169 TTCTATTGTTTGTTTCTCATTTGTTTGTACTTCGTCTCAtcccaaaaatattatt------ttgataacaAGGAGAAAAGAACCCTGAGCTTCAGttcataattcatttattttatttaatgctttAGCACCAAGAAAGATTTAcaattgtttggacaattaaa-----atgtacatttttaagataaaattttacttaggttttaaataaaaaacaactttCTCTTATTTAATGAATCATCTTATGTACCCAAAAGGATAAAGATAATATAGCAGCAAAATAAATGAACTCTTAGCCTGGTTGGCCAAATT--TATCCTGTAGAACTGGATTTC-TCAGATT-GTGTTTAA-AGGAGCTTGTCTCGTCCTCAGGATATGTCTTTGTACTTTTGTCCTTTTCCCCAATCTAttctattaacaatatctttcG--CTCTCTTTCTAGAAAGATGCGATTAGGTTCTTATCTTgcttttttaatgtctttttgctttcttaatttAGGTCATGGCTGAATTTGTGCCAACCAGGGCCTTGTGCTAGACCGTCTTACCACATCTACGGGTG----CACTTGCTTCTCTGCAAGGTCAGTGCCTCGAAGCTCTCTGTGGCGCATTCCCTTTGACTGAcccaaat-gaaaacaatttaaacattGCTTGTGGCTTTTCTTCCC-CTTCCAAGTTCTATTCCTATGTGTTCTCAAGCCTTCTTTCCCTTGGGCAAAGATAGATGAGAGTCACTAC-TTTTTATTGTCATGGTGCCA--------------CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAGAGACCATCTTGC-CACGTCTATGGGTGCA------------------------------GTTGCTACATGCT------------------------------------------ATCCCAGGATGGCTTCCTTCACTCTT-----CAACCATTCGTGTAGCAAAGTGata---taatatttaacttttacaaCTGTTTATTAATTTCTAGACTAAAATGACAAGCTAGAGAATCCCCCTTATAAGCAAATGtagaaaaaa----------caataaaccaaATATTTGAGTTGATACAAAACTAGTATGAGTTtcattgcaaagcaaaatgagagCCTCAGTTTTCAGACAGGCACACACTGATCAACTGACAGCA--ATTCAAACAAGAGCTCTAGCCATTACTCTAGTAAACAGTAGTAATGGCGGGTGGGATGTTTAGGAATCAGGTTGCCCAATTGCCATTCTATAGTCAGATAGTGGAATGATGGATTACAAGGGAAAACAGGAATTAGGTAGG------------------AAAGTGAGAGGAGAGAAAGGCAGGCAGCAAAGAAATTATTAGGAGGGCCTCAGGTTAATTAGTTCA-------------TACATTTCATATCTTAGTCATTTGGTACATTGGTAAGGTCAAATGATTATATGAGGGTGTTAACATGTGCTTAAGGTCTTGTGTATCATTTCTGGAGTAGAGAGAGTTTACATCTCTTCCCAAGTGATTCCAGGATATCTGAGAGTCGTTAGAGCCACCAATGGGTACCTGGTATTACCTTATGGTACAACTGGTGGGTGGG---TCAGGTTCAGAGT---------AATACAAACTACACT-ATGTCACCTCTTGTCTCTTTCCCTAGGCTCTCTACCACGACCC----AGTGCTTTCTTACATTATAAGTAGAGCATTTAGcttatcatattatttttgttCCATCTCTACCACTAATCTATGGGCTCAAAACTGgtagaaaattctatttttttttcaacaagGTAGCATGTGAAAACTACCAAGCTTAGAGCCAGGGCAC-ATACTGAGTACCCAAAAAATGTCTGCA-ATGAGAA---TAGAGTAAGGCTGATGGCTTGTTagttaaaatacaaa-atcagaaTAGAAAA

a score=17355
s chr3           143637018 1121 + 160039680 TAACTGCACCTACCCCACTGACCTTGGCATGTCTTCCAACGTTAACTCAAAAGTTTGTGAACATTTT--ATGTCCTCTGAACTAAAC---CAAATGTCTC---ATCCCAACATTATTTT-----AAGCAATAAACTCATGTCATTTTTTTTCTCACTGA-------------ACACTTACTTGGTTCTCTGACTCTAAACATGGT----TCCACACACTACCTTTTTGAATGAACAAATTCTTACCAGTTATGAACTTGTGAGCTAGTAGTAGAGACAGAAACAAAGTAATAT-ACAAGGGAAACATTCTACTACAAAT-TAAGAGTGTTCTGAGCGATCATGGCTGAGAGGC------AAGGA----AGAGGTTGACATAGGCTCACTGGCACTA-TGAGAGACTGAATCATGTAGCATTCATGCCGTGATGTTAAGAACTAAGCCAACCTA----TTCATAGGTTTCC-----CCCATTTAATCTATTAACAACTATTCACCTCAGGACCCCTCACTTCAATTATAGTCAAGAATGAGATGATCTGAGGTAAATATCCTTAAAGATATCCAAGGATATCTCCTCACAAAATGACATGTTGAGGCAGATTCTCTACCAGGTGAGTATAGCAAGTGATTTGTCACCAGAGTGCGCCAATCTTTTCTTGACGTTCCATGATTAATACAGACTGGCTGGGTTTGAAACCTGTCATTGTCGAGTGGTCCTCGGACCCTAACCACATTTTTCTTTTCTCCCATCCAACCAAATTGTCATTTACTTTATCAGATACATATGAAATTGTTCCAATCTGCCCCCCTACGTCACCTCCTTCAGACCAATGATCAATTGCCTGCACATCTTTGAACGCCCACTAATTTATCTTTATCAGGTAGGCATGAAGGTGTCTGGGAATAAAAGCAAGAACTAAGTTGTGATGTCTCCCATGCTGTCAGTCTCCATAATATCCTGCAATGATACTTACAAGTGTGATCTGAAGGGCTTCAAAGGAAAGAGGAGGAATGAGAAGTCTTTGATGGACTAAGTTCATCCTAATTTACATGTTCTAATTAACACCACTGTGAAGAT-TCTCTGTGTTGCCCAGTGTATTGAACACCTGCCCAAGTTCTACCAAT--AAGAGGCAAATACTTGCTCTAATGTAGTAACCTGCTTTT
s HiC_scaffold_1 129835983 1081 + 233722169 taaataaaccctcACCACtatttttg------ccttcatttttttctgtgaatttgatGACTATTTTTCATGTCTTCTAAGTAGAACtctcacatttttttctattctgacTTCCTTTTCTAACAGGTCATCAACC--TGTCTTCATTTCTTGCACTTACAAACATTTTTGTACACACACTATGCGCCCTGACCCCAAACTCGGTGGTTTTTACGTGCCACCTTGTTGAAG----AGTTTCCTGCCA--------------------TGGCAGAAAGGGAAACGAAATCACTTGAGCAGCTAGATTCCCCACTTGGGATGTAAGGAAGCGCTGGATGATCATGGTGGAGAAGCTGTGTAAAGAACCCCAGAAGTGGAAACAGTGTGGCTGACACCAATCTGAAGTTGACCCACCTGACAGCTGTGTCCTAAGTCTGGGCACTCTATCAAAGAAGGATCTCAAAGGCTCTCAGAAACCCAGGGACCCTGGGAAGCAGGTGTTGCCTC-----TCCTCACTCCAA-----------AACATGATG-CCTGAGGACAA--------ATGGTTTCCTA--ATACCT----AGAAA----------GGGCTAGGTCTATCATCTGATGAATGTAAATGGTGACTTTTTATCTAAGTTTGTTAGTAATTTCT-GCTCTTCAGTTAATAAGATGGACCGGCCCTTtggcaaatgttttattttctagtgATCATAGAATACATATCacattcttctttccttctacCCAAACCAGTTGTCACTCACATTCCC--------------TTGTTGCAGTCTGTCTTCAGAAGTCAGTCCTTTCAGACCAATGATCAATTGTTCACATATTTTTGAACTGCCACTAATTTATCATTATCAGGTAACTATGAAAGTGTTTGACAACATGTGTGAAAGTTGAGGTACAATGACAC---TGCCACTAGCCTGATTTGCACCAGGTGATGGTGCCCATATGTGTGACTGTAATGGCTTaaaatgaaagaggaggaatGGGAAACCCTTAGTGTACTAAGTTCATTCTGATTTAAAAGCTATTAATAAAACTAGTGTGAAAACGTCTATGTGATATGCCATACAT----CATATACCTAAGTTTTACCAATAAAAGAGATAATTGCTTCATTTAACATTTTAGTCTGCTCTT

a score=124548
s chr3           143643798 2803 + 160039680 AAACATGATGTATCTGTAC---TGTATAGAGTGTATTCCTGTGCACCATTTACAGTTGCAC-----TTAAAGCATAGCCTCTTGT-CATAGGGAAGAAGAACA--------------CGCACACGACTCTGCATGTTATTTTTATGTGTGAGATGTAG---TTACCTATAGGGAAAGCTCTGCTTACAGAGAAG---------GACTCCTATGGCATT---GTGTTTTCATGTCTTCACAGCATCCCAGTTTGTGTATATTATTTGTATAGTTCTTAAAGGGAAGAGCTATGAGAGAGTTTCTGTCAAACTTCATTTTTATAGAATCTATGTATGCTGATAATGAGCCAAA---TGGAATCtttattcagtgct-gtctccagc---agacttaaagttccttgagagtaagcaccttgcctgtcttgctcatttctgtctccagtcccaagtgcaatgctgtcacctaatacatgctcagaaaaaaaaaatgggaatgaatgaTGGGCTGTAACATCCATCAGCAACAGCCAAAGGTGAGCACACCCATAAACTGACAGCAAAGGCAGTCAGTGTGTTAAAAAATGACAGCACATACCTTTGTTTCTCCTGGCCCTCATCACCAAAAATATGACAGAAGCAACAGATTACCCAGGAACATACACTGAATGGTCT-ATCTCTGCTTCCATCAGGTAACTAACTCCCTGTCATGTGGTTGGAGGAGTCTGAGGG--TTTCAGGTAATGCTGTTGTTACTGTAATATCCACGAC--TCTTGTCCTGCACAGATAGCATGATACATCAAGGTTGCACGTCAGGGCAGAGCAAATC----ATACCATTGGTAGGAATACAGCATGCCTCCTGTCTTGTGGCAGTTTCCAGGGCAGATGACCAGTGCTTAAGCAACAATTCCTCTTAAGA-ATGGGACTTCCCTGACTGAGACAGGGAAGGGAATTCAGCCTGTTGACTGCCTTCTGGGGTTTGTATCCTGTACTG----CCTGTGGCTGTCATAGACAGGA-ATGTGTGGGATTAATATGTAAAGGTTCTAATACATAAAGGTTTTAAGGACGAATTAGCCTGGAAAAAAATCTTTTAGCTCCCCACTGCCTGGTCTTATTTATAGGAATTGTAAGGTGAGTTTCACTTCCCCGACTTTGTCCTTTAAATTGACTAGTCCGATAAGATGATCTCACTTTAAGTAATCATTTGTGTTTAGGTTTTTCTCCAGCAGTTTTGTATTACAATTTAAAAATAGACTCGCCTATGCCTGTACTC-ATGTTAGCTATGGTATTTTGAACTTGATTTCTGAGGCTGCTGACAGCTTTTGAAAGATTTAACTACTGGCAGCAATGAAAAGTCCCATAGAATCTGTTCTCTGAAATCTTTTCCTCCTGGAGAGAAAAATAAAGGGGCATCATTTAGCAGGGAATGTATCGCCATAAAAATATGGTTATGCAATAATGTCTCATTAATATGATAAATCATAACATAACCTTTTCTATTAAATGTAAAAGGCAATTTATTGAAATGAAGGCATTTTCTTCCCCCATGGCATATTTCCATAGTTGGTTCGAAAGGATATTTTTATTATTATTCAAAACAGTCATTCTGATTTGCACAGGAGATAACAGTTGTCCGTGACATTTTTATTTCTGCATAAACAGATTTCCATGTTGGCGAAGGTTAGTACAGTAGGAATTTGTTTTTGCTTTCAGATGCACTG--ATACCACTCAAGCACTTTGTT-GGGATGGAACCACTAATTTATCCCTTCTGCCTTTATGATCTTGTCAGTACCGCATGTCTCCCTCAGTCTTTCTAATCTAAAATAATCCCACTGAAATCCTTTGATTGTCTCCTTGGACCTGCTCCATTCCTGAAGCAGGAATGTAATGGGCTTTATGGCACTTACTTGGGAGCCATTTATCCAGCAGAACGACTATAGTTGCTTGTTTTAATAAGAATATGCTTTGTGGTAAGTGGGGACTGCTATTTAATTAGCCAAAGGGAAAGTAGTTCATGATACAATCTGTTCCAATCATCTTGGACATTAAACACAAAGTCAAGTGCAGTTATTTATGAACGTGTACTTCATTTGCAGTTGCTTTGAGCAAACCTCTTCTCTGAAACTTTATAGCATTTTCTGACTGCACTGCATTGTGGGAGGAGGAAGAGGGGAAGGAAAGGACATGAGAGCATCTCATAAAATTCCCGAAAGAGAAACAGAAGGTTTACTTATTGCCATCAGGATTGTGAATACAAACCTACCCAATGGCAAGCAGGCCGAGGCTGCTGATTCATCTTTCTGCTATCTCATGGTCCCTGCCTTTAGTAAGTAGCTCCTGTGAG-CATGTTACGGGATGTTAGTGAGATATTCTGGGATTTTGAGTATG-GTATTTTCATGTGTGTCTGTGTGT-------------------------TACATGTGTGCAGTGGTG----TGTGACTGTCTTTTCCTTGGATGTCCATTGCTTTCAACTGAATCACATTTCTGAAACTCTGTAATTATGCTACTATATTTTTACTGTAAAT---TAAAATATATGTAAGAACCTAAATGAATATCTAATCATATTAATTCTTTGAGTAAAAGAACGTACCTGAACACATCTTGAAAAATATCCCCTTCCTAATTACAGCTCATATCACGATATTGT-GAAGTAAGTTGTGTACCTTTCTCACTGGTCGACTTTTTAGACTAATAATTGATGCATTAATTAGTGACCAAAAAACAAAAACAAACAAAAATAAACCCAGGAAAACAGAAAAC--AATAATAGATTACGTTCCTGGTTCATCACCTCCTGGGCTCTGGCTTAATGATTATTTATAAACCTGCTCTTTCTTCTTA----TAAACTTTTCAGAGCCA
s HiC_scaffold_1 129842621 2811 + 233722169 AAATATAGTATGTCTGTATATTTGTATGGAAAATGTTCCCAGATATAATTTACAGTTGCATAATATTTACAGAATGATCTCATTTatgtaagaaaggaaaatagacctatgtgtgtgtgcacatggct--gcattttattttcaaatgtaa-atgtAGCATTTACCTATAGGAAGGGTGTCAGTTGCAGGGAAAAGTGAAGAAGGCTTTCGTAGAATTCTATTGTTTAGATATTTT-GCAGCaagcatacatttatatattgtttgtacAAAT-TTAAGGGAAAAAGTGACAGGAA--TTTTCCCCAAACTTCATTTTTGCAGATTCAA------------ATATTCCAAACCTTTGAATACTCATGAGATGTTTGTCTCCCGCGCCAGACTTAAAGTTCCTTGAGAGTAAGATCCTTGCCTGTCTTGTTCATTTTTGTCTTCAACACCTAATGCAAAGCTGTCACCTATTATACTCTCAAGAAAAGACATGTGGAATGAATGATGGGCTGTAACATCCAGCAGCAGCAGGCAAAGGTGAGAATACCCATGAACTGACAGAAAAGTCAGTAAGTGTCTTAAGAAATGACAGCACGTACCTTTGTTTCTTCACTCCTTCGTCACCAGAAATATGACAGAAGTAGCAGCTTAACCAGGAAGATACACCCAAGCATCCCACTTCGGTTTCCTTCAGACACCTGGCTCACTGTCACAAGCTTGGAATATGCCGAGGGGGTCCCAGCTGATGGTGCTCTGACTGATATGCTGAGGACAGCCCCGTCCCTCAGAAGCAGGATCATGAAT------TGCTGGCAGACACAGGGAGAATCCAGAATGTCATTTGCAGAAAC-CAAGATGGCTCCTTCCCAGCACT--TTTCCAAGGCAGGT-ATCTGTGCC----CCCCATTCACTCTTAGGGTGAAGGCCTTGATTGCCTGAGGCCAGTAAGGGAAGC--GCCTGTTGAATGCCTTAAGTGGTTGGTGTCCTGTATTCTTTCCCTGTGGCTTGCACGTGTAACATCTGTGAAACACTAGTGCAGGAAAGTTCTAGTGCATAATGAGTCTAAGGGAAAATTAgcctgaaaaaaaatcacttagttCTCAAATGTCTAGTAATAGTTACAGAAGTTGTGGGTTCAGTTTCACTTCACCGACTT-ACCCTTTATATTAACAAGCTAGATAAAATGATATTGTTTCAAACGATCATTT---TTTAGGTATTTCTTTGGCAGTTTTGTATTACAATTTAAGAATAG-----TCTGTGCCTGTACTCTATGTTGGCTGTGGTACTTTGAACTTGATTTCTGAGGCTGCTGACAGCTTTTGAAAGATTTAACAACTGGCAGCGAGAAAAACTTCCATAGAATCtgttctatgaatttgttttctcCTGAA---------AAAAGGGCATCATTTAGAAGGTAATATATTGCAATAAAAATACGGTTATGCAATAATGGATCATTAATATGGTAAATCACAACATAACCTTTTCTATTAAATGTAAAAGGCAATTTATTGAAATGAGGACATTTTCTTCCCT-ATGGCGTGTTTCCACAATTGGTTTGAaaggatttttttattattattcaaaacAGTCATTTTGATTTGCACAGGAGATAACAGTTGttcatgacatttttatttctgcataAACAGATTTCCATTTTGGCGAAGGTTAATACAGTAGGAATCTGCTTTTCCTTTTGGATATACTGTGATACCAGTAGAGCACTTTGTTTGGGATGGAACCGCTAATTTATCCTTTATGCCTTTACAATCTTGTCAGTGCTGCATGTCTGCCTTAGT-TTTCTAATCTAAAATAATCCCAGTGAAATCCTTTGATTGTCTGTTTGGACCTGCTCCATTCCTAAAGCAGGAATGTAATGGGCTCTATGGCACTTACTTGGGAGTAATTTATCCAGCAGAGTGACTATAGATACTTGTTTTAATAAGAATATGCTTTATGGTAAGTGGGGACTGCTATTTAATTAGCCAAAGGGAAAGTAGTTCATGATACAATCTGTTCCAATCATCTTGGACATTAAACAAAAAGTCAGGCTAAGTTATTTATGTACATGCACTTTATTTGTAGTTGCTTTGAGCAAACCTTTTCTCTGAAACTTTATAGCATTTTCTGAGTGAGCTGCATTGAGGGAGGAGGAGTAGGGGAAGAAAAGGACATGAGAGCAtcctataaaatttttgaaaaagaaacagaaggctTACTTATTGCTATCAAGGTTGTGAAAACAGGCATGCCAAATGGAAAGCAGGCAGAGAACTATGATTTAT-TCTCCACTATTTTGTAGTTTGCATCTTTAGTGAATTGCTGGTGGAAGAAATGTTGCAGTATCTCAGGAAGATGCTAcagaattttgtgtttgtgtatgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcacacatgtatgcATGGGTGTTCCTGTGTGGATATTTTCTTTGAATCTCTATTGCCTCCATCAGAA--ATATTCAAAAGATTCAGTAAAT----Tcccata-ttttattataaataaagaagaaaaatttaagaagcCTAATGAAGTTCCAatctttttaattcttcaagCAAAAATAATTATGTGGACCCATTAaaggaaattta--------atttaaagc---TATGATGGTGTTTTAGAGgtaaattgcattaatttctaattgACCAGAATTTtgagcaaataaataatatatttatgaatggatgagcaataaaa--------------------gaaaaaaagaagctaaatATAAGATTATAACCCTAGAGTATCAACTCATACTTCTTAGTT---TGCTTCTCTATATAGTTAATCTCTCCTTTTAGGTGGAAACTTCTCTGAGTCA

a score=42506
s chr3           143648365 2460 + 160039680 tcagGACCAATCAGTTTTTTTTTTAAAGGCCACATATTAATTTCTTGTCTAGGACACTTTAG----------TATGAGTTCCT--AGCATGAAAAGATACAATTCTGAAAAATGTTAATGCTTATCAAAGTATTATTCTTCAGTTTTTGT-TGGCCTTTACTCTCCAATTTAGTTTACCAGCAAGAGCCCTGTTATTTTAGGAACCATGAGAGATCA-CTAGACACCAATTTTCTCTCAACTCACATTT-ATAACTCATTGACACTAATGTGAGCTCAGGGTGGGGATATAAAAGTGA-CTTGGTGTCTGTGAGCTCCCTCTCTTCCATGGAAGGCACACGGTGTTCAGAGTTCTTGGCCATGTCATCGGAACCTTGGATAAACAATTAAGAACTAAATGCAGATGTCTGATTCATCGAGTAGCACTTAGGACATGAGTCTGAGTGGCAGCCATCTAATGGTC----AGTGGGATGAACACCCTCCCTTTGTTCT----AGAGCCGGATCAACCTTGCTAACATTGAGGCTGAATAAGGCACAGTCATTATCATCTTGTGACATGGTGGAGA---GCTCTATCAGTCTGCTGACAAAAGGATTTTAAGGTGAAACTAAAAACCAACAGAAAGCATGATAAAAACAAATTCGA-------TTTGTCTTTTATCATGGATATCGTGATTGGGTAGAG--TGGGGTCCCCTTGGTCTGCAAAGACTGCA-----GTCCATCT-----TGCCTTGGGAGTCATGGATTTGTACTAACAGCTTTCAGCATAGTGTTGTAAGGCCTGCTT-----TCTCACATCAGACTACAAGTGTATGGTGGGAAGACATCCTGTC--------TTTTATTCCAAGATCTCCTACAATTT--ATATGAGATAGTTGCACTCTAACTGTCATACAACAGGTGAAGAATGAATGA------GCATGTCTCTGTTATCA----------TAGAACTCGTGTACTACAGTTCCTAGATTTTC-CTCTAATTTACTGAGGTCAGTGCGCATGACAGGTGGTGATCTTTCCTATGAATGAGCTTACAGAAACCATAATTACACTTACGATGTAATTTATCCCCAAACTGCAACATTAAAGTGGTGCGCCCCCTCATATATATCTGAG-----TAAGGATGATTGATGTCCTGTGCCTGTCAGTGA-----------TGTATACAGACACTTATTACAAGATCCCTAACATTTTAAAAGAAAAGGGTATAATTG--TAGGAATGAGAAATACAAGAGATTCTCTTTCAGTTAT---CACTCATAATTC---------------------------atacatatacatacacatacatatacatacatatacacatacatatacacTGTGTAATTGGCTT------TGTTCACCTGGCTCTTTCTTGCTCCAAGAAGATGAAGCA-------TTTGAGGTGCTCTTAGAAATAGCTTTTAAATCTTTAATTCCTTTCAAGGCActctt------tcaacttacacat-------catccatggaaagtg-acaggcaa-attttatgagttccatttctcaaaggaagctaaggctcaTGACCTCAGCTACTTACCCCTAATCATGCTCACAGGGGGCACTAGCCATGCGTTACCTGCAGGAATTGACATGTTTCGACAAAGCTGACCTTGGCTTGCCTTCTAGTAACTCACTG--TGGTTGAG-CAGT-TTGGCTTTGCACTCAGGGTTCTgggaccccgccctaggcctatggctttagagagtcct-cctgaccttcttgtcaatgctgctctgccccatgaagtaaagaatagatggagcaaaggagctaggctcgtccACATTTTGATCACCCATACTGTGT--ATTCCCAACCTGCCTGCATATCAGGTAGCTGCCA---CCTAACTCTGAATCTCCCACCTCAAGGAGAAGCC-----ATCCTTCATGCACTTGTGATAGGCCTGCTTCCCAG-GTCACCCTTCCAAGAGCACAGCACTCATCATGCCAAAAGAGAGAGGAGAACAGTGCAAATGTTCAGACAAGAACA-GGGGCATTCCTGAGAATGGAATGCAGAGAAAGCAGCAGTTGC-CACGTCCTTCGGATGAGAGGAATGA-GGAAGAGAATCACAGCGAAAACAAGGAAGAAACCTAGTCCAGACACCGGGTGAAAGTAAAAAAGACACTGGTAAAGGTCCTT--GGGAAAGATGCTGAGTCT-GTAGGCTCTGTTGGAACAATGTTATGAGAACTGAGGAAGAAAGGACAGGATATATTAGTAGAGAGGA--AAGAGTACAGAATGACAAAGGGACTGAAGGCTATGCAGAAGGTCACTGGGGGAATGTGCAG-ACTACAAAGACTAAATG-------GAAAGAGGCAGAAAATAAGCTGAAAAGAAAGACAGAATGTAGCTGGCATTTGTCACTATTGGTTCCCC-----------------------------TTTGGGGGAGGCAATTTGCATCT----GGTTTATTTGGTGGGAACT-----ATTGCACTCCTTTCTGCTAGCTTGGAGTCAGACTGAGTGGCAAGGACAGC--AACTGTGTTTGAAGTCCTTGTGCTTTCAGATTTATTCCTACATGGAACAGTCAAGGACCTACTAGGCTCCAATATTCTGGAAGA
s HiC_scaffold_1 129846653 2568 + 233722169 TCAGAGCCAATAA------CTTTTAAAGGCagtatatttctttcttctttgggaTTCTTTTGATCCTTTAGCTAAGAATTTTTTGAGCATGGTAATGTACAATTGTAATAAATGTCAACGACTATGATGCTACTGTTCTTCAATTTTGGGAGGGTCTAAACTCTCAACTTTAATTCATCTGCAAG--TCATTTTATTTGGGGGATCATGAGCAATCAGCAAGACATCATTTTTCTCTCAAATCGGGTTTTGCAACTCATTGCCACTAATGTGGGCTCAGGGTGGGGTTGAAAGTGTGAGCTCAGCTTCCGCTAACTACTTTTCTCCTA--GCAGATACATGGTGTTCAAAGCTCTTGGCAATGTAATTGGAACCTTGGATACACAATTAAGAACTAAATGTAGATGCATGATTCATCAAGTAATACTTACAAAATGAGTCTGAGAGACACTCATCTCCTGGTAACTGAGTGAAGTCAGCACACCATCCTTATCCTCAAGAAAACTGTGTCAGCCTTGC------TGAGGCTGAAGAAGACATAGTCACCCTCATTTTACAGCATGATGGGTACTTGATCTATCA--------ACAAA---ATTGGATGAATAATGTAGACTATAACTGAAAGCATAAT-AGAATGAATTAAatggcttgtttttcttttatgattaacTTTATAATTTTGGAAGTTCTGAAATTCACATAGTCTAAAAAAGCAGAGTAGATGTCTATCTAAGTCTACAGTAGTATTTATG-----GTGCC-ATGGTTATCATTATGGAATCGTATTGCTCACTTTTCTCTCCCATAGAAGATTGCAAGTTCCTTAGGGGCAGATCGTAtgccttaattctttttacttc-ataCTTTTTACAACCTCAGTATAAGACAGATGCTCAGTAACTACTTCACAAAAGGAGAATAATGAATGACTTAATGCATGAGTGAGTGAGCAAACTCAGAAGTAGACCTTATTTGTAGTAAATCCTAATTGCTCTCTCCATTTTACTGCAATCAGTTCACAT-CTAGGTGACAGCTTCTCTAGGTGATAAGCTTACAGAAAACTGTATCACACTTGAAA-GGGACTCAATCAGAAACTAc-acatgaaataatta-----ttttgcatATGTCTTAGTGCCTTAAGAGTAATTAAGTTCTTGCACCAGCTAGTGAGTTTCTATTCTTCTCTGAAGACTTTTATTACAggttttgtaacatttttaaagggAAAGGTATAAATAATGAGAGGTGAAAAATACTAgtgattctatttttattatttatagtcATAATCCACCTCTCATGGTTTTGTGCTgaattcaacacacacacacacacacacacacacactcacactcacatacacactcataacacaaatattttacaaaatattttactgatttttgttcCCATAAAGCAACTAAGTCATTACCTGTTTGAAAAATTGTTAGAAGTATC-TTTAAAACTTTCATTGTCTTCATAATATATCTGAATCATTTACTTCCCCATTCTTCCACAGCCTGAGAAAGTACACAGGAAAGATTACATTAGTTctatttttcagagaaaattaaTGATTATGACTTCATTCATTTAGTGCTCATCAACTTCCTACAGGGCACTAACCACGAATGATCTATTAGAGCTGCCA--GCCCTACAGAGCTAGCCCTAGCTTTACTTCAAGTAGCCTACAGTCTCTTTGAGACAGTATTATCCAAGAACTTGGATACCCAGAGCACTTGCAGAAACAGTGAGTTTCAAGCAGCCCCACCTGTATCACCTCTGACTGCTGTGCT-CTCTATGGGTTCAAGA-------------------TGCACTCATCTAGAGTCTGAGTAACTTGTCCGCCTCAGGCTCCATCCAGCTTCTAGACCACATTCCTCCCAAGCCTCAGTCCTGAG-----------ACGGAGAATTCCCTGTCTACTTCCTAAATTTGAGAACTGAGTCTTCCCCAGCTTCACTCTTTC------------CTGTTTTTGGCAAAAGAAAG---------GTGTAGAACTCCAGACAAACAAATGATACATGCTCGCAAAGAAGATACAGAGAAGAAAGCAATTACACTTTTGCCTGCAGTGAGAGGACTGACGGACGTGA---ACAGAGAATCTTAGAGAAAGACCTAAAGCAACTGGAGACCGAAGGTGGGAGAG--AGcgatattagtttttaaaaaaaaaaagctgcatttGGGAAACTGGGTCAAAATTATGTTATGAGagc------aaataaaaaagattaatttagtAAATATAAAGAAGGGTATAGAAtgataaataaatggaagagT------GAGATCACTTGGAGGATGCATGGAACTGCAAGAacagaaagaatggaagaaagaggcagaaaataagtt-agaagagagacagaaaattaCTGATGTCTGCCACCATTCATTACACTGTCTTACAACAGTATGAACCTGATTAGGTCTGGAGTAAACTATTTCTATCTACTAAGTACCACTGGATGGAACTAGTCAAGTATGCTTCTTTCTGCTAGTTTAGATTCTAAAAGAACAAC-AGGAGAGCTGAAAATTTTCTGAGGTCC-TGTGTCTTCAGATACATTCTCACAGGGAGCAGACAAATGCCTTTTAATTTTCAGCACTTTAGAAGA

a score=37705
s chr3           143650877 1525 + 160039680 GCAGTACATATCTTTTCAATAGATTTCATATTGG-TTATCCAAACTAGAAAAACTGTGAGTGAATTGAAGTTGGAGCTTCATAGCTTAGTTAGTGGAAAGCAGGGTCCTAGTTTTCAAGGGAAAGTTGGG-----------ATTTTCTTCAATGCAAGTGAAGGACT------CAGGTAG---TGTGAATGAATG-GTTAAGTCATTTATATCAAAATATCTGGCCATTCTGACTAAGCAGCTCATAAGGAGCTGGAATTCCCTATAGAAGTCAGTATGTTTAATAAGCAGACTTCAAAAGCTAAGGGTAAGGTAGATGCTTCCCTTTTTATTCTATTTCTGTTAAAGTAAATATAGGCTGTCCAATGACTTCATTCTGTTTATTAA----TAGATATTTGGTTTATAGCACTATCTATTCTTT-------ATCTACTATTGAAAGTGAGGTAGTAGTCATTACTTACATTAAAATGTTCA-----------TGGATGTA-----------------GACTAAGAGGGTGTATAATTTCTACATG-ATTTTCACATAATCTTAAATGTTCTGTGGGTGAGTATTAAGGGAAAATCTTTCTAGAACTACTTAAGTGAGAATAAACTTGATCATTCATCCTGAAAATACATACTGACTATGATCCTTAGGGTCAACTTAACAAAGGAATGAGTTTTGTATTTTAAAGGGGGAAGAGAAAGTGGT---AATACATTTAGCTTTTGA-CTTAGTCACTCATGGGTTGTTTGT-GATGGTAATTAATGGAGGGTGTTAT-TCAGACACATATGACAATGACTCATTCCATCAAAAGTTCCTCAAAGGTC---TGCCTGCAGCAAAACAATGGTGCACTGTGTTTTGGTTTGTAATTATTCTGACGATTCTAAGATTTGTATTCCATTAT-TAAAATTTGTTCCGCCTCTTAAAAAGGTGACTATTACATTAATCTGAAAAGACCAGGGTCCCCTATGAAGA---CTGAGTACAGCTGTGTCCATGTCTTGGTGCTTTCTTTGTGTTAGTTGGAGGGCCACGGATAAAAATGAGCACTTTGTGCCCTTATGGCTTTATTAGCTATTATACTCTGAGAACAACAACCCTGGATGTTTTGAAATTTACAGTTTCCTGGGGCCATTTTCACAAACAGTTTTGACATAGCACAGAATACTTGATCAACTGTCACCCAAGGCGATTTGAAGGAAATACAGGAAAGGGAAGGTCTA-TTTGACTGTTGACACTGCAAGTTCTTTCCGTTTTCCACAGTAAAGAAAAATCAATACTCCCTTTCCGGAGAAGACCTATAGAATACTCAGGAAAACATTCAAG--TCTGCATCATTGAGAACTCTGGACATAGTCACAGGGACACCGAGACGCGCTGGCAGCCCTTTGC--AGCTTTCTAGAGGACAACTTAAGTGAGAACTGTAATTGTATGGTCATAGATATCACATCTGACATGATATCCAAG---AGAAATGAATTTGGAAACCTACAAGGACTCAATTAGTGAAGCAAGAATGACAAAGTGGT----GTTCCAGAGGTCCTTGTTACATGACCTTTCGACAGCTGT--ACCGGTGTGATGTCAA
s HiC_scaffold_1 129853660 1526 + 233722169 GCAACACATATCTTTCCAATAAATTTGATTTTTGCTTAAGCAAGCTATTGTCAATGttatttgacaaaaattaaaCCTCCAGAGCTGAA------AAAAACAAGGTTGTGATTacttttgaaatactgtgttgtgtATATACTTTATTTTGAGGGCAATAAAGGACTATGACATAGATAGCAATATGAATGAATGAGTTAAATTATTTAG--CAGAATATGT---------------------CATAAGTATCTGGAATTCTCCCTACAGGCAA---TGTAAACCAAGAAGGCCCAGTAAGACAAA---AAGCTTGatagctattatttt-tcttattactgtTCAAGTAAACGTGGCTTTCCAAAAAACTTAGTTTTGCTCAATAAAAAGTGAATATAGAATTCATAGCactccttatttttttctttttatgta-tatgGGATATAAGATAATCACCATTGCTTAAATTAAAATGCTTACACAGTAGGACTGGATATGCTTTCTTCCTACAGCATACCTCAGACTTCATAGAAGTACTGAATATGTTTTCATGCCCTTTTGCCTGGTTCATGTATAAGAATTACAGATAAATTCTTCTAGGATGAATTAAGTGAAAATAAACTTG----TTTATTCTGAAACTCTGAATTTAATATGATTCATCCAACCACCTTAACcaataaattatatttgtatgtt-----ttgaattaaaaatgtttctgataTATTTAGcatttgaatttatttacttattgggCATTTATTAAGGGAAATTAATACAAGGTTCTATGCCAGGCACAGTTTACAATGACTTACTCTATTAAGAATTT-TCAAACATCCAGTGATTG--ACCAAACAATTGTATATCATGTatcatttttcaattattttaacaaTTCTAAGGTA---ATTCTTTTAGATAAAATATCTTCCATC-CTTGAAAATGCAAGTATTCCAGGAATCTGACAAATTCAGGGGATCGTGTGTGATTTTCTGATCATGGATATATCT-----CTAATGTTTTTCTAAT-----TTGGAGTGCCACTGATAAAAATGAGCCCTTGATGCCCTTATGACTTTATTAGCCATTGTACTCTGTAGACAACAAGActacgtgttttgaaatttacagTTTCCTGGAGC-ATTTCCACAAACAGTTTTGACGTAGTACAGAATACTTAATCAACTGTCACCCCAGGCGA-TTGAAGGAAGTACAGGAAATAGAAGGTCTATTTTGAACCTCGAAAATGCAAGTTCTTCTCTTTtgtca---tgaagaaaaataaacctttcccctacAGAGAAGATCTATGGAAGGCTGAGGATGAAATTCCAAGCTCTGAATTACTAGAATTTCTGGACATCATCAGAACTAAGCCTATA----TTTGCAGCTCCTTTCAAAGCTT----GAAGAATACTTTAGTGAGAATAGT-ATTTTATGATCGCAGACTTCACACCTGACACAATATCATGgttaaaaaatgaatttggaaaggTGCACAACCTCAAATAGCAAAGTAAT--TGAC-AAGTAATCACCATTCCAGA--------TTTCATGACACGTTGACAGCTACAAATATGTGTGTTGTTAA

a score=83538
s chr3           143654244 3458 + 160039680 TTTGCTATTGGGCTTTCTAGGATACATATCCACCATCTTCCAACAATCATTGCCTACAGAGAGACCA---------TATCTGCCTGGAGATACAGCTCTCTG-----------------ACTTAA---ACTTACAAATTCAAGTTTATGAATAAATGCTCTCTCTCTCTCCTCTCCTTTTTTTT----------------TTTTCTTCTTGAATATCCCAGAGAAACATATGGAATCCAATCAATAGTTTCAATCCAATGGGTG-TAATGTCATAAATCTAATGAACAAAATCAAATGAATGATGGACCTAGTAAGTAAATGAGAGA----AACTGAGTTGATTAAT-AATGAAGTCTAGTGGGGACCAGCACAGGATGCCATTAAAACATTAAAGAAACCAATGAGACCTCACTCACAGCCAATGCCTTTCTCACAGCAAATGCTTTTCTGCTCCTCTT-----GCAATGATTGTTTTGTCCACACTCTTGCAGAAGTTCTCATGTGctgagaacagtggcgagtgcctgccaccttgtcatgtcactttcaaggtagaggcatgaaaatcagaaactcaaagccaacttcaagacacagggagtcagagcccagcctggagtaaatgggatcctctctcaaaataaaaTGAAATGAAATGAAGTACaataaaataaataattaaaaatGTACTCTTTGCTAAGATTTGAAGCCAGGGAGGGGGGGAGGCTTTA---CCTGAAAGCAT-ATA---AACTAATTCTTTGAAAATACTTAAAAAGATTGAGTGATTCATCCTTTTCTTCTTTTGTTTTCAGTTGGTTTAGGTGATCTTTAAATCACAATATGTTGGGTGATTTTTAGAAACCCACC---------ACACATGAACATATTACACTTAAAAAGTAGAACATT---AAAGGGTGAGCCAAAGTCTCCAGTAAGCCCATGGGTAAGTACTATTTCCAGTTTGATGTGTATTTTCCTAATCCCCCTTGAGCCCTCATCCCAGTCCCACTGATGGTCCGCTGTGCTCTTCCGACTCAGAGTCTAAGTGTGATGATGGTGATAGCATTGATTttcaggtgtggctctcagaattggtctcattactttaaagtcacatcttgtataATTCATTTTTGTAATTCTGTTTAGTATTTCCCCAGGCCTTCCAATACTTAAAAAGAAACACACAACAGGGGAATAACTCCTGAGGCAGCACT-GGATGGCGGGAATTCTACAATCACTTATTAAATTGGCCTCCTAAATCCTGAGCGGATTTAGCAAAATGGAATTTCAAAGAACTTCACAATGTACTGAATACCATTTTACTTAAAAGAAAAGCGGAGTTCAGAAAATTAGATCTACTGTGGCTCCTATGGGAAGCCTCCTTTTTCCTC---CTCCCCTTCCCTCCCTCTCCTCTT----AATATCTTGCAGAGAAAGGGGAGAAGAGT---GCAGAGAGCTAAAGAGAGCATCC-AACCTTTGTTCTCACGTACATGACTTGAGCCATTTGCCTCTTTTATGACTGACATGGCTGGCCAGAGAgttattattaggatttataagcagtcccatgatagacttatatttcttaagtgtttataactgtcataaaaatttagtgtgtcatgcaaggtctcaacctggcaataaattttCAAATAATATCTCTCTATATTGTTAGAAGGTCGCTTGCTCATCTTTAAAGGTTTGGA---TGAAGGGT----GGAACAGGACAAGAGTTTCATAGCACGAGGAAAACATTGATATTAGAAGAAAGATATCATCCTTTGGTGCATTCCGTTCCAAGTCTCAGAATGATTTGTGGTAAATAGCAGATTTGGTAGGGCAGCAGCATGAAGACATTTTATATTTAT-AGATATTTTAct-tgggcaaattattcaacttctcaggcccccaattccttctttttggtggaaataatataataatattaatattaatatatattatgacttagacggttgagccaatacacagagaacatttagaagagtacctagTGTGTAAAAACTTTTCCT-------TGTGTTTCTTATTAAAATATTTCCTTG---AGATGGCTAAATTCTTGTAATTCTTACCTGTGAGATCTCA---CTACTAATCATACTTCATTGAGAATCATACAAAATTAAGATGAAATGTAATCATTATAGTCCTCATGTGAACATG---------TAT---------------------TTTTTTGC---------------------TGATGTTTGA----------------------------------------------------------------ACTAGCATG-----------------------------CTTGTTACTTACA-GGTAAGAAATGAA-ACAAGTTTCTGAGTCCTGGGTGGGATAAAGGATGCTCACAAGACTACAAGGGAGGCACCATGGCTGAGATTATGCCTTTATTATCACTCACAGTATATTAAGATTATAAGTCGCTCCAGTCTCAGTCAGGTGATCGGCTTGGTTCTTCCTCTCCCAAATGCTTAT-------------GTTTTATGCCAAAGGAACATACATTTTTCTACTGAACAAATTCTCTTGAAGACAAATCAATTTA-----ATGGGTGGGTAGGATAACTTCCCAGGAGCC-CCTTGGGCAGTCTGCTCCTT-----AGAATAAGTTGCCATGAGAGTTCTTTGAC--CTGACTGATATCTTCTTTTCTCAGGATCACTTAAAATGTTTA--GAAACATGAGGGAGAACTTGGTG-----ACAATATGATAACAGTTATTTTACAGATGCTAATGATACTGTTTACTTTCTTCTTTCTCTAAAGCTAGGGGTATAGTGgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCTTGCTGATAAAGTGGGGCTTCATTTTTACAGTACAATTAGTCATGAGGGG-----------AAAAATAACTGAGCATCTATCATGTCTGAGATCCATCTTGAGGATA-TGTAAGATAACTCCTCAGTCTTCAAAGTTATTTAGGTAGAAATAGATGCAATTATTCCCATATAAGTGAAGAGTACG-AGAGGGTTCAGATATGTTGACCTTGCTGAGCTACCAAGAACGTTAACTTAGGTTAGAACATAGGCCTAATTCCAAGGCTTATTTCATAGAAAAAAAATAACCCTTCATTTCTGAGGTGTGAATATGTTTAAGAGTTGGTAAGTTGAGAAGTTATAGAAACAACCACTGAAAC-AGACAGACAAAGCTAAAATGTGTTTCTCATTCTCCTTTTATGTCTCACC--CTATCTTCATTTTCATTCATCAACTGCCCTGATTTCCCATTTTCAAATGCTGTCCCAAATTCACCAAAGCCCAAATTGAATATTCCTTTAAATCAGTGT-GCCT--GCCCATGTCATCACTACTGTGTAGGCTAACTAGAACTAACCAGA-AGGCTGATTTACACTAAATGCTTTAATCCCAAGTAGCAGTGGC------CCACCCATCTCGCCCACTGGGCAGCTTCTGAGCCCCATTGGAATGGCTTAGCATTGAGCATGCTGGTGCA-------AGCTCAAAGCCGAC---AAG--GAGGCAGAGACTCGCTTATACAGCTTCCCATAAACAATTTCAACAACATTCAGTGTGATCCCACTTCCTCTTCACTCTACCT--GCCAATGACAAGCACTGGTCAGAA
s HiC_scaffold_1 129857274 3413 + 233722169 TTTACCACTAGATATTCTAGGATGTACACCCAAATTCTTCCAAGAGCCAC-ACCAATAGATAGGTCAGATTGGCTGTGTTTGCTGGAAGATACAGTTCTCTATACCACCATCCATAAATACCTACTATAATGACAAA--CAAGTTTAGGAACAAAtggcttctctttc----ctttttgtgtctaaggagaaaatgtgaattttgttCTTTGGTATCAGAGAAATGCTTATGGAACCCAATCAATGAGTCTAACCTAATAAACGATAATTTCAGAAGTCgagtgaa-aaaatgaaatgaatgatgGGGTTGTTAAGTATCCTGGAGAGACTAACTGAATAAATTAATCAATGAAGTCTGGTGAGAAATGTGAAAGGAGTCCATCAGTACATCAAAGAAACCAGCGAGTGCCTGCTCATGGTGAA-------------------GATATTCTATTTCTCTTTAGGAACCATGATTGT-----------------------------------------------------------------------------------------------------------GCCAACTctaaaatg-----------------------------------------------------gaagtgaaattaG-----------------------AATGTGCTATTCGCTGAGAA--GAAGCCATGTAAAG--------TTTATTTCTTGAAAGCATGATATCCATCTCCTTCTTTGAAAATTCTTGAGAAAGGGAAGTTGAACAATcagttgtatgtgtgtgttca-ttGATTTAGATGCTTTTCAGACAAAAATG----AAAGGATGTATA-ACACACACCGTTACAGATACACTCACAAACATTACACTAAAAATTTAGAACACTTGGAAAACTGAAGATTAGGTTCTCCTTTAACTTAGAGGTAACTACTCTTCTGAGGTTGGAGTGTATTCTTCTAATCCTTTTTTTGTTC----CCTAATCCAATTGATTGTGTGTTGTATCTTTTTGACTAAAAGTGCAAGTATGATTATGGTAATATCATCGATTTTCAGGTGTGGCTTGTAGAATTGGTCTCATTACTTTAAAGTCACATCTTGTATAATTCATTTTTGTAATTCTGTTTAGTATTTCCCCAGGCCTTCCAATacttaaaaagaaacacacaacaGGGGAATAACTCCTGAGGCAGCACTCAGATGGCAGGAATTCTACAATCACTTATTAAATTGGCCTCCTAAATCCTGAGCGGATTTagtaaaatggaatttcaaagAACTTCACAATGTACTGAATaccattttactttaaagaaaactagAGTTCAGAAAATTAGATCTAGTGGGGCTCCTATGGGAAGCCTTTTTTTCCCTACAGCTCTCCTGGCCTCCCCCTTTTTCTGTAAGATGTCttatagaaaaagagaagaagagccAAGTATGAAGCTACAGAAATCTTCCAAACTTTTGTTCTTGTGTACTTGATTTGAGCCA----CTATTTTTATGATG---CTGTTTGGTTCAAGAGCTATTATTAGGATTTATATGCAGTCCCATGATAGACTTAGATTTTTTAGGTGTTTATAACTGTCAT-AAAATTTAGTGTGGCATGCAAGGTCTCAACCTGGCAATAAATTTTGCAATAATATCTCTCTATATTGGAAGAAAGATGCTTGTCCATCTTT-----TTTAGAATTTAAGGAATACAGAGAACAGGACAAGAATTCCCTAGTACTAAGAAAATGTTGACACTACAAGGAAGAAGCCGCTCTATTTTGCACAGAGTTCTAAATACCGTAAGGAATTGTGGTACGTGGCAAA----GTAGACTAGAATCCGGGCAAC-TTTCCCATTTATCAGTTACTTTGCTGTGGGCAAGTTATTTAAACTCTCTTACCTAAAATTCCTTACTTGCACAGTAAGGAAAATAATAGTA-----ACCACTTTATATGGCTTTTTGGAAGCTTGAATCAATATatggaaaacattttgaacagcacttccggt------attttttttaaaattctgtacttATTACTTAAATTTTCTCTTAGACAATTGGTTAAGTTCTCTAAATTTTTGTCT---AGATATCATCCTTGATAATGAAATAGCATTTTGAAGCACCTGAAA--ATTATCAAATGTAACCATCATAGTCCTTATGTGTATCTGATCAGTGTCTATAAATAGTATATTCCACTATTATTTTTTGCTAGACACAGTCTGGGATGCAGTGATGGTGGATCTATGGCACTTATACCATAATGACCTGTGtgttaccactgaaagctctaaatgattcaccaccactggcctGGGGACAGAGGTCAGAGTTGTCTGCAATGTCATATTACTTACACattaagagattaagacaaatt--TGAATTCCAGTTGTGACAGAGGATGCATACTGGGTTGTAATGTGGCCTCCTGGG--AAGATCATGTCTT----------------------GGATCGCAGTTAACTTAAGTCTCAGGCAGTTGTTAACTTCAGATTTTACTTCATAAAACTCCTATCGTTTAGCACTAAGTTTGACTCTAAAGAGAAAC-CAAAGTTCTTGCAAATAACTTTTCC--AAAACATAAGAATCAAGAAGCAGAAACAGACAGGGTAATTTTCTAATTTCCATCCTTGGTAGTCTgcttcttataaaaaaaaaaaatgccttgtgAATTC-GTGACTACTGAATGAGATTCTCTTTTTTCa-gataactttaaatttttactaaGACATGGAGGAAGAAAGAGTGTTCAATCATCATgctaa----tatttttcacatttaactagtagtgtttcctttttgttttctctctttctcctagGTCAACAATTTATGTATGCTTGTATGTGTATGAA---------------------------------TCTAACTG---AAATGGACATTCACTCTTACAGTGCGGTTACTCACtaagagcaaagaaaacaaaaatttattgagcatctataaCGTTCTAGGGTTATCTTGCAGATGCTGTATGTTATCTCTCCAATCTTCA----CATTGTGAGAAAAAAAGTT----TTACTGCCATTTAAAGGATGAGAATGCAGAGGAT--AGACAAGTTAAGCTTGAAAAGCTAGTAAGGCATGAAACTCTGGTTTGAATGCAGGCCTAACTTC-TTGCTTA--TCATAAAGAA----------CTCACTTCTGAGATATGAAGAGTTTTAGGCATTCATAAGTTGCTAAGTCACAGAAATAGTCATAGAAAAGAGACAGAAGTAAGAATGATTTGTTTCTGACTCTCTTTCC---TTCCACCTTCTATCATTTCTCCCAGTCATTCACT---CTGAATTCCACTTTTGTAATTCTGTCCTAAGATCACT-AAGTCTAAGCTCATTATTGCTTCAAAACATGATAGCCTAAGTCTCTTTCATTGATGCTGTGCTTGGTAACTAGAGCTAACCTGATAGAACAGTGTGTACTAAATGTATTAATCTCTGATAGCAGTGGCAATCTTTGGCCCTTCTATCC----AGTCTCCTTCAGAACACTATCAGAATGTTTTAACA---AACATTC-GCTGCACCACTATGCCTTTGAACTGACGTAAAGCAGAGACAGAAAATTctttatgaatttctttataaACAGTTTCAACAATAATCCCTGTGGCACTACTTCCTCTTCATTCTTCCTGGGTCAATGACAAGTTCTTGTTTGAA

a score=68193
s chr3           143657815 2755 + 160039680 AATGGTCAATGGAGTCGCCTCTAAACCTTTGgttcatttttttt--gcagtttggggtgtgctttagtctgtatgtggctactggttaatttagagattacgttgccaaggttgaactaaactaactctctcaaagtga-caaatagctttgtcgtattttcccctaacaaatagtattg-ttcaaaatagtgtcatccagcaataaaggtggcaggaatcaggtgacagtaggcaaaacaagaggcaatacttccactcacagagtcgacgtttatactgtgag---gaaatgcatgaagaattgtctggatcttctgatatctcttctgcaacaagtttgaaaaaaaatcaagaaaaattacttgaaagatgaatttatcacccgctgtcataataacaaactccaaatggaaaatatgccctgaaatattagctaatcatCTCTTTAAAATAATGTTTAGTTCGTCGTTATT----------TCGTTTCTCTGACTTCGTGTCTTGTGGGTATGTACACACCATATTCAGAGAATATG----AATAGAATTGTTGGATAGAGTATGC---------------ATATGTATTGTGAGGGGGTTT--------------------GCTATTTGGAGATTTTT---TCCAGATGCAAATGAATTGTTGACAAATGTGGAGGGTACTATATTAAAAGGTAGAAGAAATTGTGAATTAGGCTGAGATAAAACAGAGGGCTTACCAGTGGTTACAATGCTTTCTCTTTTCTGGCTAAGAAAGCAGCGCCCTGCATTTGTCTGAGAAATGCATCCCTGAAAGGAAAACCACTGTCTCCTCATCACGCTATTGATT-GCATTATTGAAATTTAATCTCTGGGCCATAGCAGGGTACAGAGGCAAGAAAGAAATTTCGGCAATGTGATGATTTTATTAAATGCCGGAGAGACTTCGTGCCAGAAATTAAAAGTGCAATCATTGTTCCTAGTTTCACAGATCATTAAGCAAACAACCTGTTTCTGTTTGGACTATTTTATTTGATTCAGGTAACATAAAAGACTTTCATAACAAGAAATCCATGAAGAAAACTTGACTTATCCCATATTTGTCAATATGCCTCTACTTAATCATGTGCATGTTCATATGACTAATATTGCTATATACTTCAAGCTGTGACATTTATGGCAGAATATTGGCCATCCTTATCATTCATGAATCCCCCG-TTCTGCTCAT----CCCTGATGGGTCTGAGTGATCGGAGAGCATTGTCTTGACTGGAA-TTTCAGTTAAAGGTTTA--TAGAATACATACAAAATGGAAACGGTAGTGCAAACTTCATTTACTTTCAGTGCTCGGTTTGCTTTGGCATATTGCAATTCCCAGGGTGTCAAGAGCTAAGGGAAAATAATATCAATACATTCCATATAAACAAAGATCGGAATGTACAGGACCTTGTTGTATATATGCATATATGCATATATGTTAGATAAAAATAACGATATCATGTCCAAAGA--ATATGACTTAGAGGTGACAAATTTGAC----TTTCATTTAAAAATATGAGTATTTATCATATACTTTTTAGAAAATATAGGACATAGAAGTCTAGATAT-AAAATGAATAACATTTGTGTGGTGTGTGGTATTTTATAACCATATCATTGGGGAAGTTAAGGTTTTCGGTTGTTAAACAAAAAAATGAGTCAGTTCTAATGTGGACAAGGA----GATTCCTGGTGGATCTGGTTTTTTGGTTTTTGTTTGTTTATTTTTAATGTTAGATGAGGCAAAGCGGGT---TGGTAATGCTTAGAAAAAGCATAAACGTAGGAATGTTGAGAAACTGCCT-TTACTACTCATTGTAATGATTAACTA-CATCA-----------TCAAGTAGTTGCAGAAAAAA-AATAAAATTACCATAGGAATTGAGATTTGTATCTAACCATAAAATTT-TTAACTTGCCTCTCAGTTGGCTCAAGACATCGAG-GGAAGCCATGTGTTTAAGGAAAGGATGAGTCGCCCACATGCACTTTGCCCTT-AGCTTTTCCCCAGGACCGGAGTT--CCTCCAGGCAGGTCCAACAATGCATGACAAGAATCTGAAGCAATTAT----TCAGGAAGA---GCCCCAGCTGCCCAACAAAAAGCAGAAATCCAGAAATCATACACACGCCCTCCCACTTACTCAAGAGAACTTAAACGGCTGCTTTAACTAAGGCCACTTTGAAGATGTTAGTGACAACAAACAGAAGCA-AAAATGAAGAAAACCTTTGCCCTTCTGTCTCAGTCTGATTTTAGGAGATATATGGAA------------AGGACACTCACATTTACCCCGAAGTCTATCT------GGACCTAGG----------TGGAGTATCACAATACCTCTTAGATGTATTTGCGTAGATA--ATCAGGAGGCAGTTTTGTGCATCTGTGGGAAAATATGCCACGGGTACCTATCAATCAATCATCATTAACGGGCAATAAATCTGGTCTTGGGTCTCCCTGGAACAACATTTATAGAAAAAGTTGGTTGTGATTCTCCTTAAGTTAAAATTTGGACGGTTTTCCACCTCATAACTGTCATTCTTTTGAACTCTTACCAACAGGCCCTATACTAT----------------CACTTACATTTATAATCAAACTAGCTATATTGTGTGTTTCATTGCCTCTCTTGAGTCACTGGCTGTTACCTTGCTGGCTTTGAGTTCTAGGTATTGCCTCCATTTCTGGAGCCCTGTGCTAATATTTCCCTGTCT--TCAG-ATTTGCCCCATCTTCCCTACATCTGTGACTCCTCCTTTGGTACCTTTTG--TTCTCATCACCATAAAGTATCACCTAAAAGGTTTTCAGTTTTTCTTTCTTTTTTACA
s HiC_scaffold_1 129863045 2765 + 233722169 AATGGCTAAAAGAGTCATCTTCAA--------CTCATTTACTTACAGCATATTATAGTATATTCTTATGTATGGACAGCAG--GGTTGGTTTACAAATTATGCTGTCAGGTTTTAACTAAGCTAACCCTCTTAAAATAAACGAGTGGCTCAG--AAATTTTCC---AAAAAGTAACACTGACTTCAGAGAGTA----CCACCAATGCAAGC--------CCAGGTAAATGTGGGGAAAATA-GAGCCAGCATTTCCACTCA-----TGAATGCTT-TGCTATAAATGAAAAACCAATGAAGATTCAATTGGGTTTTCCCAtatatctttcaaaatgaatttttaaaac--tcatagaaaattatttgaaatatggaTTTATCATTTGGCTTCATAACAATGAACCTtgaatggaaaatatttcttaagatactgatt----------ttaaagcaatgtttatttcattgtttttatagttttcattgtatttatagtttcattttttgC----ATGTGTATGATATATTAAGAGAGTATAGGGTAGTATAATTGGTAACTTAAGTATGTGTATAACAAATATGAATATTTGTGGTGGCTGAGtttcttctagttttttcttttttgatattttgaggTTGTTAGTGGTAGGTGAAAACGACCAGTAGG---AGTTGGAGAGCCTTGAGTTAAAGGACAGAAGTCCCCTCTAGTATAGTTAAGGAGAATCAGAAGGGGT-TCATTGCTTACATTGTATT-TCTATAGTATTTGAGAAAGTATTTCCctgtattttgcttatgaatgAGTTCCTGAAAG-AAAACCACAGCCTCTTCATCACACTATCGATTTGAATTATtgaaatttaatctctgagctatAACAAGGTA--GAGCAAGAAAAGAAGTTTCGCCAATGTtatgattttattaaatgtttgagAGCCTTAGTGCCAGAAATTAAAAGTGCAATCACTGGTTCTAGTTTCACAGATCATTAAGCAAACAACCTGTTTCTGTTTGAACTATTTTATTTGGTTCAGGTAACATAAAAGACTTTTATAACAAGAAATCCATGAAGAAAAGTTGACTTATCCCATATTTGTCAATATACCTCTATTTAATCATGCCAACTTTCATATAAATACGATAGCTATAT--TTCAAGCTGTGACATTTATGCCAAAATATTGGTCATCCTTAACATTCATGAATCTTTCTCTTAAACTCATGGCCTTCGGTTGGATCTGGGTGATCAGAGAGTGTGGTTTTCATGGGGACTTTTAGCTGAAGTTTTAATAGGAATAAATCCCAAATGGCAACTGTACCATAATCTGCATTTACTCTCAATGTTTGAATTTATTTGGTGAACTGAAATTTCAAGGACATCAAGGGTGAAGGAAAAATAGTAACAATACATTTTGTGTAACCAAAGATTAGACTTTCATTgactttatt----------atttatgtatacaAAATATCTAAGAATTA------CCTGTGTAATGATtacaagatttaaaaagaaaaattttgaatatgTTAAATTTAAGGAAGTGAAcat---tcttata---tttaaaaaa---aaactgtagaaaaTTGGATATAAAAATGAATAGCTTTGGCTATCTCTGTGGCATATCAAAA--AGTTAATTCTGGCATGTAAGCTTGTTGGTGAGTGAGC-AAAAGATAGGTAGATCTCAGTCTGGAAAAAGAATATGACCCTCACTGGgtctgggtt-----gttttgttttgttgtttt--gtgataAATGAGGTGAAGTTGGTAAATGGTAAC-----AAAAAAGCATAGATGTAAAAATGTTGAGAAATTACCTCCTGTGACCCATTCTAATAATTAACTACCACCAGTGTGATACATGCAAGTAGTTACAGGAAAAATTTTACAATCATCACAGGAATTCAGATTTTTATCTAATCGTAAAATTTCTTTACTTGCTTTCCCGTTGGCTCAAGAGATCAAGCTAAAACAATCTCTACATATGAAGGATAAACAGTAAAGCTAC-CTTtgtacttgatttttttcccaggaCCCAAGGTCACTTTCTGCCAGGTTCAACAGGAAGTCAAAAGGATCTCGGAAAATTATCTTCTCATAAAAATGTTACCCACTAGACCAACTA-----TGTGATCCACAAGT-----ATACATGCTTATTCTTACCAGAGGCAAGAAAAACAgctttatagattaaaaacactttaaaaaaaac-ttatcgGGAGACGTGAGTACAAGATAGAGAAAGACTCCACAGTCC--------TCTGATTTGAGGAGAGATTGGGAAGTCATAGAAGAGATGACACTCTCAT-----CCAAAGACTACCCATgaaaagacacagataaaaaccTCTGGGGCATCAAAATTCTTCTGTG-TTTATCTAAGCAGAAACTATATGGGGACAGTTTTATTAAAGTACTGCAAAGTTTTTT-----TATATGCAAATCAATTGCAAACA----GCAATCAATTTCATCATCAGTCTATCTTGAACAAT-TGTGTAGCAATAATTAGCTATGATTTCCTTAGTGTTTAAATACaaactattttcttccttttctttattattttct---aagcTTACCAACAGTCCTTACAGTGTGAAATGTGTTAAAAccaaactatatttaaaataaaaccactAGCACTTGGTGTTCC-TTATGTCGCGTTGTTGTCTGGCTCTCCTGTTGTTGCCTTTGA-TCCGAGG--------CTACCCTCTGAACACT-CCCAGCTACTTTCCAGTCTTATCAGTGGTCGTTTCATCTTCCTGACATTTATGACTCCTCCTtttgtgacttctgttttcttactACCATAATGAATCTTCTGAAATGTTTTCAGTTGCCCTGATTTTCTCCCA

a score=24088
s chr3           143660909 2058 + 160039680 tcctcagccTGTCAGTCTTCCTTTCTTTAATAGTTCTCTGAATTCTGTAC----ACTTTCATTTGTAGGCCT-ATTCCATTGGCCTCTAATTGAGACAATGTAGTGCTGGAAG-----GAAATACTTCCTCCT-TACATGGGGCTTGTGAGCAAGTTCTTGATTTCACACCTCAAATGCAGGCATTGGGCTTTCCTTGTAGACCTTACTAAAGCTCTGGGTTTGAACACATTCCAACATT--TGGATTCAGACCTAAAGGCACTGTTTTGAGTATGCTTAGAAAACTGATTTTTCAAATAGATAGATACAGCAATCCACTTCTATTAACTTAAGCATCTAAAATGTTGCCTATGGTTTACT-AAAATAGAACAGTTCATGCAATTAATACT-ACAGATGCAATTGCCAAGA-CTCTATATCAGGAGGAAGTAGATGGACAGTGGAGAGGGAAAGGGTATAGAGTAATATGTGTCTTTTGTGGAAGATGAAGAGTAAAGAAGAAAGACAAagccaggcatggtggtacacgatttaatcccagcactcaggaggcagaggcaggcagatttcagagttcaagg-----ccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccttgtctcCTTGTCTCAAAAACCAAaagaaggaggaggaggaggaggaggaggaggaggaggaggggggggagggggaggagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaAGACAAACAGAACTTTCCACCATTATTCATAGCCTCTTTATGAGTATAAAAATAATCAATG--------------------------GAGATGTGCCCAATTTCAGGCTCCTATTGCCTCTGCTGCCTCTT----TGCTAAAAAATAAGGTACAGTGTAGAACATTGCTACATTGTTCCTCTCAGGAGGCATGGAG--GATGCCACCATCTAGCTAAAGG------CTAGATGACATGCATAGCAATTCCTGCACTTGGTAGCAGAGTATACACCTCTCTGAGAATCAAAACAGAACC--------------------TAGATCCTTCCCTCTGGTGACCTGATCCTATTATTATCA-TGActctcctctctctctctctctctctctctctctctctctctctctctctctctctctctcttcctctctctctcttcctctctctctctctcAGGACTTTTGGATGTCAGATGAACAATAAGAGTTTTGTGAGCTCCCAAAATTACAATAGAGTTGGCATGTCTGCACGCCTGTCTTCCTGTAACAATGCATTTTATTGTTTGGAGAAAGTAGAGGCAAACCCACTTGAAACCAAGGTGGTGAAAGCTTTTAGCGA---TCTTGTGGTTATATGTGAATGGACATTTGGCAAATTCCATTGCTGAAATGCTTTGGGTGGGGTAGAAGGAATCCAGCCCATTTCTCTCTATCTCCTGCCCTCTTTTCTATTCTCCTCTCCCATAACTACATTCCTTTCTTCTGTGTGCCTCCATCCCCCACCCCCACTAAGATCAGAACACCAG--GAGGAT--------GTTCTCTCCTTTGGCAGAGTCA---CTTGCCTTTTCATAGACAGGTATTCAGCCAACGAAGGGACAGATGCCCTCTTGTGTTCTCTATCAGTAC----------CTCCAGTGTGA---------TCTCCCACAGAACCCAAAGGCCGCAATTTGTTAATACTAAGTAGCCAACACCTAACCTGGCTAGCCTTAAAATATTTTG---------GGTAAGAAGTCA----AAGTTGAAGCTATTGTATCACATCTGTAGTCTGTCTCCACCCGTAGTCAGAAAGTAACAGTGGTCTGTGCAATAAATACCTAAGGACCATGTAGCTGAACCAAAATCAAT-AGTCTTCAATTCAGCACAAAGCTTGAAAAGTCTGAGGTGTGTTCTATAGTCCAGGTAAGCTCTTATTAGTTACAGTTTGCAGGAGTATCTG-CCTTAAAACACTTATATGAATATGTTATCAGTCCATGTGTTCCCTGTAGTCTATGTAACAAACACCAGTCCCTTGGTTCTACAATGTTATTAGAAATGAGTgtgatagtgttgatggtagtggtgtggtatggtgatgttggtggtgtttgtg
s HiC_scaffold_1 129865784 1856 + 233722169 TTTTCAGTTGCCCTGATTTTCTCCCACAAATATTGCTACTGATTCTGAACCTAAAAATACAATTCTGGACCTGATCCTTTTGGTCT----TTTAGATGATAGAGTTCTAAGAACACTAGAGAAATTTCCTTTTACACCAATGTATGATGGGCTAGTTCTCGCACTTGCACCTCAAATACTGGTATCAAACTTTCCTCCAGGATCTCACTGAGTCCCCATGTTTGAACACAGACCAGAATTATTCATGTCATGACTGCCGACATTACTGtgaatgt--------------------atatatacatatatatcaggTAGTTTCTCTTAACTGAA-CACTTAAAACACTGCTCCCAGTTTTCTGAAAATCGAACACATAA--CAATCAGTATTTATGGATGCAGTTATGAAGAACTCAATATCAGGA---AGTCAATGTacaggagaaaggggaaaggt------------ttGACTTTTATAGAAGac------tagaagagaaaaacagaaacaaaca----------------aaatccaccACCATGTTGACAGTCatgtataaatatgaaaaaaaaaaaaagaaccagtcTGGGCTA--AACCCAATTTTAGGCTCCTCC---CTCCCCTGAA------TGTTTCCTT-TCT------------------------------------------------------------------------------------------------------------------------------------------GACCGTTCCATCTCTGCTTGTGATCTTGGAAGGGCAATAACTGTGGTCAAAGCCAGTCTGAGCAAGTACTACTCCAAAGAGACATGTACAGTTT-AGATGCCCACAGcaaagagagatttttaaaaggcagCAAAATAGGGCTTCATAGAGAATATTAATA-ACAACTAATACCAGGAGGCAGAGCACAGATGCCTCCCATT-GCTCAAGAACTGTCCTTGCTGGTATGTATAGCAGTTCCTGGACTTGGCACTAGAAAACCAATGTCTTTGGGAAGCAAAACAGAACCAAATTATATGTGAAATTTAGTGGATTCTCCT-----ACAACCTGACCCCATTCTTGACAACGACT-------------------------------------------------------------------------GCCTCTTGTTATCCATTAGTACTTT-GGAAGCCAGCTGCATAATGAGGGCATTGTGAGCTCCAACAATCATAAGACAGTTGGCATGACTGAACTTCTATCTTCCTGTAACCATATACTTTATTGTTTGAAGAATGAAGAAGTG----CACTTGAAGCAAAAgtggtgaaagctttcagtgatttttttttgattatatgtaaatatacatttgGCAAATTCCACTGTCAAAAGATTTTTGGTATGATAGTAGTGgt-cactttattttttcctttctcctatctgtttttctcttctgtttccc--tgGCAATGATCTTGTTAACTTTGTAACCACTTTACTCCTCCCTGGAGGGAACAGAAGATAAGCAGAGGTTTGCTGCTAGTTCCCTTGCTGGACAAAATGGGACCCTTTCTTTTCACACCTAAGTGAT----TAACAAAGGGACAGGTGCCCACTCACTTTCTGTGTCTGTCCAAATGGATGGCTGTATTGTGAAAGTGATCCCTTCATGAGGATCCCAAATGAGCCAATTTGCCAAAGTCAAGCAGCTAATATGTAATCTGGCCAACGTCGAAGTTCTTTGCATTAGACTGTTAAGAAATCATTATAAATTGAGGTTGCTGTTT---ACCTGCAGTCTATTGCTACCTCTAGTCAG--GGTAAGAG-ATTCTGCACAGTAAA-ATCTGTCAGCGGTATAAC---ACCAAACCCAACAAGCCCTCAAATCAGCTGAAAGATT--CAAGTCTTACACGTGTTCTAGAATCTAACAAAAGCACCTCTCCTTATGACTTGCTGAAGACCCTGATCCTAAAAGACTTAAATGAGGAAATTGTTAGTCTCTGTGCTTTCTGATATTTGTAGACTAAAAGGGAATCCCTTGGCACTAGAATTCTGACAGAA------GTAATGGAGTTGGTGATGGTGG-------TAGCAGCAGTGGTGGTGTGTGTG

a score=125534
s chr3           143663339 3739 + 160039680 GTGGTGTGAGTGAGTATCCACTGCAAACTTTTTCTTCACCTAGGAAGTTCTTGGCAGGAATTTTAAATGGAAGGGCTATAAACTAATAAATGTACTTTGAACAGTGCCAGCTTTACAGTCGAGAGAGGGCAGTTCATGGTACTATTAAGGATAACAAGAAGAAGAATTCTCTGATGGGAACTCTAATAAATGTAGTAGCATGCTGTAATAAAGAGCACTAGAAAATGGATGAGGTCTAACAAAATTATTCATAAAGAGAAATGGAAAGGGATGCCATGCTGAGCGGTCCCATGCAGTTATATAGACACTAACAAGGTTATCCCTGGAAGCTGAGTGCTAGTACATTCACATATGTTTTCTAACTAGCACAAAGAGAGACTGTTTTTATCTCGAAGAACAGGAGAGCCTGGAGTTAGAGGTGTGCTAAATCTTGCTCCTGATTTTTAATAATTCAGAGCCAAATAGCAATAATGGCTCACGTAGGGTCGGTTTAATGAACAAAGCAACCTCACTTCAGGTTGTTCGATGCTAAGGCTCTCTGCCGAGTTGCTAACTGGTGTACTTTACAGCTATCTCCAGGGTTCTTTTTGATATGATATTATCCTCCTCACACACTGTGTTTTCTATACACCAAAATATAATGTGAAACCATGAGCGAGGATGGAAAACCCTGAAAGAATGTTCAAATGAGCCTGTGAGTTCCTGCTTTGGAGGTACAGCGATGTCAGAAAAACAGGCAGACGCCCTGCTTACGCACTCCT----CAGAGTCCTTAGGACTCACTCTCATTCACGGAGCTTGGTACGGA--GCTGGGAGCATCTTTGGAGCTAACGAGAGAAATTCACCCATAACATTTCTATTATCTCCCGCTGATCATCAACCCTTGG--------------CCTGCGAAACACACATAGCCTGACTTGCAACCAATTCAATGACTGCATTGGTGAGTTGTTATGTCTCTGACATACCAGGTCCTCTATTTCTGTAAATTTACTTCTTATGATAAATTTAAAGGATGCTTTTATGACACCAATGAGTTTAAACCTCAGCCCATGGAAAGGAACT----TTATGG---TGGAGGATTTGAA---CTTTTTCTGTTGTTGTTAATACTCAAATTTTAAGTTAAGACATGGCTATGAGGACGAGTGACCAAATCTTAAGCCAATCAAAGTCATTCAAAGT-------CAATTGACAAAGA-----GGGATTTTGCTTCTAGACTCCATGTTAATATTCAACTCATAGTCAGTTCTTCATGACAAGAGGCTAGCATGTTCACAGGCAGTGTGATCCTTTGTCGAAGTCTACAGCTTTGACCGTGCAAGCTTCTGCACTGA-CTGAGCCTCATGGACTGAAATGATTTCCTTTTTC-CCCCTCTCCAGAGGCCTAGGATGATATTTCG------------------TGATG-AAATAATGCATAATAT-------GTACAGTGTTCCGTGATCTGCCTTCAAGTTATGCCATTTTCTCCTCTCTCTGTTATCCAGCATCTCAAATTACAAA-TGCTCAGAAGGAGTAGATAAAGGAGGGGAGGATTCCCTTGGCCTCTCTTCTTCAGACCTGGGCTCAGAGAGGCCTGCCCCTGTGGCC-AGCTCCTCCTAGATGTCACAAAGCACCAAGAAATATGCAGTTTCCCTACACCTTC--AACCAGA-----AGTGAGGTTC--AGGAACACCTATCTGCCTTTAGGACCACTTTGCTAAATTCACTTCACAAGACT-----GCCTGTGTGATATAGGTAAT-----GTTCTTCCTTCTAG-GCTATGAGAACAATATTGGTCTCTGATTCTCTGGCCTTGTTTGCCCATCCACAGATGGAGTGTAGGTTTTCTTGAAGCATTCCCACAGTGAAGGTAGACTGAACATAAAGCATGCAGGAGGAGGAAGAGTGAGAATCAGAGAACTGGTAA-----TTCAAACTGAGAAACTCAGCCAGCGCATGGTTCTGATTATACAAACACTGGTCA---GGTCCTCTCCAGGAAGAGCCCCT------GCTCAGTCTGATAAAGCAGGACACAACCTTCACGTTGACAACC---AGATGGGTTAAATCCCTCCCCCAGTGTCATTAACTAAAATAGTATTCCAGAGCTAGAAAACTTACTACTTCTAAGAAAGAAAtcacatgcttcacctaatttgagccttaaaacaccatttaatatatattttcaaccttattttattttaga---aggaagaccaaggtttataaactatgagatctgttcctgagatctaaatggtagaagagttagaaggtgaattgaggtcttctctttccatatgcgaaga-ttctaccactgtaGA---ATACAcaataaccccccttatctgagggggtgtgatgtaagatgccaggagataaataacacttagagatagaactgttttatatagtatagctctctctctttatctcactttctatagctttatacagacatga-taaattttaatttataaataagagataataaattaataatagtaacATTCTATAGCCCAGTGACActctctctctctctctctctctctcCACCTACCTATATATGATACAGATATAACACTTTTAGATAAGAATTGAGT-CCTGTAACAGAAACCACTGAAATGGCAACCATGGATTAGGGAGATCTACTGTAGATCATTTGCCAGATATTAACAAGTGCTGTTGTTTT-----GTCTCCATGGAAATATTGGGAATCAGAACTGAGCGGGGAGG-CAGAAGCAAGT--------GAGGAATTTGGGTGGATTGTGTGGTGCGGAGCAACCATGAGTGGAGGTCTGGATCCATTTCTAGCTATGG-GAAGCTGATGCACCAAGACTTCGGGAAGAAGCAGGCAGTAAATATCCCTAATAGAGAAGAG------------AAGAAAAGAGAGC--AAAGGAGTTTATACAAGCTCTAAAGACCAACTCCTCCTTCACAAGTTTGCCTTGGGGAGCAATTCAACGAGAACCGATTAGTACAGGCCTTAATGCTTCCCACTTGAAAGTGAGTTAAGACTTACTGAGGGGAGACTAATGCAGGCCA------GTCTTCTCGGAGATTCAATGCTATTTCAC------AGGTTCCTGATT-CCTAT-TCTCTGGATTACACAGGGAGACAGGAAGCATGGTGGACCCATGATGCACAATCTACTGGAAAGAATGTATGAAGACAATGAGAATTAGAGAAAGAAAAAGACCTGAGAAATTCCAGGAAATGTTTCGAAGATAGTATATCATTGTTACCAGGAGGAAATGCCATGGGTAATGTCAAAGTCACTGTTTATATGGTGGAAAATCAATTTTGAAAAATGTAAGCAATGGTCACAGTGGGGCCTTTGCTATGTTTGGAAATAAACCTTCTTCAAGTAGGTCATCCTTATTTTCTTTTGTTTCTATAAAATTCAGTTTCATAAGCCATAAAATATTTATCTAATTCAACTGTTCCTAACACATTTCTCAAATCTAACCATTGTCATAGGCAGGGAAATCTG----TGGCATTGGGGAATATGGATAATCTTTAGTGCCAGAGGATGTCACCACTTCCTGACACACTCTAGGGGGAGGTGGGTCACAAAATCAAAAAATGCTCAAAGGAACTATGGCCTCGTTCTCCATGCTACTTTATGCCATCTCTTGCCAGCCGTATTTTATTTGGGGAGCAGATTCATACTCCAGAAATGCAGAACACACTCATCTCATGAACTGATTTTGATCACTGAAGTTAAGCTGGATTTTTCCCTTA----GACTTAGACCATTTACATTGCATCTGAATATAGTTTTGTACTTACTTCTGGTCTTGAAAGAAAT-TGTCTCACTAAA
s HiC_scaffold_1 129867628 3639 + 233722169 GTGGTGTGTGTGAATATTTATTGCAAACTTATTCTTCACCTAGGAACTTCTTGGCAGGAATTTAAAATGTAAGGCTTATAAACTAATAAATGCGCTTTGAACAGTGCCAGCTTTGCAGTTGAGAGAGGGCAGTACATGGGACTATTAAGGATAACAAGAAGAAGAATTCTCTGATGGGAACTCTAATAAATGTAGTAGCATGCTGTAATAAAGAGCGCTAGAAAATGGATGAGGTATAACAAAATTATTcataaagagaaatggaaaaggatGTCATGCTGAGTggttacatgcagttatatagacACTAACAAGGTTATCACTAGAAGCTGAGTGCTAGTACGTTCACATATGTTTTCTAACTAGCACAAAGAGAGACTGTTTTTATCTCGAAGAACAGGAGAGCCTGGAGTTAGAGGTGTGCTAAATCTTGCTACTGATTTTTAATAATTCAGAGCCAAATAGCAATAATGGTTCATGTAGGGTCAGTTTAATGAACAAAGCAACCTCACCTCAGGTTGTTTGATG-GAAGGTTCTCTGTCGAGTTGCTAACTGGTATATGTTACAGCTATCTCCAGGGTTCTTTTTGATATGATATTATCCTCCTCACATACTGTGCTTTCTATACACCAAAATATAATGCGGTGCCACAAGCTAGGAT-GAAAACACTAAAAGAATTTTCAAATGAACCTACAAGCTTTTGCTCTGAAGCTGTAGTAATACTAGAAAAACAGGCAGCTTTCCTGTTCACATACCTCTATAACAAGTTTTCTAGGGACCACACTAATTCAAAGAGCTGGTTAGAAAGTGTTATGGCCATTCTCAGAGCTGCACAGAGACATTTattcacaatattttcattacattatgTTAACCACCAAACAATGGTAACAGATTTATGCTTTGTTAAACACAGAGAGACTGA-TTGTAATTAATTCAATGAATGCATTGACAAGCAGCTATTTTACTGACATACAAGACCCTCTATTTCTgtgaattttcctttcatgatacaCTGAAATAGTTCCTTTACTACACCAATGAGTTTTAAATTCAGCCCATGGGAAGAAATTTAACTTAGAGACTTGAAGcatttggggcttttttttttttttttttaaagatcaaa-atcATGTCAAGACATTG------------GTGGCAAAATCTCAAGCCAATAAAAATCACTGGAAGTATTTTTACTACTGAAATTGACCTCTGGGGATTTGCTTTTAGATTCCATTTTAAT-TGAAATTCAGAATCAGTTCTATATGACAGAAAACCAAGACATCTACAACCATCGGAATTCCTTGTCAAATTCTATAGCTTCTGCCTTGTGATCTTCCAGACTGACCTGAATCTCTTGGAATGcagccttctctttcctctttcctctctggaGGCCTATTCTGAAGTTTGGTGTGCTACTTAGAGCTACTGATGCAAGCAGTGAGTAAATTTGGGGTGGCTCAGTGTTCCA------GCTTTTGGGATATTTCTTCTCCCATGTTCTCTGTATTTCATTGTCTCTCACTTTGGATTACATAGGAGACACCAGT-GAGGGTGAGTGACTTCCTAAGGACACCCACCTAGAAAC---GTTACATAGCAAGCGCTCCCTTTACCCTGGCTCGGCTGAGATCGCACACAATGCCATACAGTATTCAGATAACCTTGTGCTTCTGGCCCAGGTTCCTGATGAATTTCTTGCGGATCCCTAGCT--CTCAAAGGCCACTTGCCCTGAATTTCTTTAGTGGGCCAATAAGCC--TGGAGCAGAGGGAATCACGGGCTGTAAATGCTAGCATTGTGTGAGCACTGCAGG---------------------GTGAGCACCTTCCAAGGGAAGCTTGTGTTTCTTAGAGAGTTTTTACTCTGAAGGGAAACTGGAGTGAAAGCATTTATGAATA-GAAAAATGAGGGACAAGGAGCTGGGCATGGGGTTCAAGGTGAAAGACT----GAGTGCTGGTTTCTAAAGCCAAGGAAACAAGCCGTTTTGCACCCTTGGGGAAGAGCCCTTCATGCGGTTC--TCTCATGGAGCAG----TGACTTTCATGCTGAC--CCTAGGGAGGGATTAAATCTCTGCCCCAATATCATTAtttgaaataatgttttacaaCTGGAAACTTTA--GAGTCTGGAAACAAATTCACTCACTTCCTCTAATTTGAGCCTCACAATACTACAAAATAGATATTGCCAACTGTATTTTACTTTATAGATgagagaaccaaggtttgcaaaCTATGAGATCTGTCACTCAGATCCTA-----AGGAAATTTAGAGTGTGAATAGGGGCCTTCTCTCCCCAAATTCATAGATTTCTGCCTCCAGAAACACATCTACAATAGTCCCTC-CATTTG------------------TGCCTAG------------------------------------------------------------GCCTTCAGTGG------------ATGACTAAATCTTAA----------------------------------------------------------------------------TCCCCtccaacacatacac-acacag-tttgACATTTTTGGGCCATAATTGACTGAGTAAAACTGaaaccacaggaa-aaaaattatagattaGAAAGGACTATTGTAGATCCTTTG-CAGATGCTAAC-AGTTTAGTTATTTTCACAGCTTCCTTTGGAAATA--GGAAGTGTAAATCCACAGATGAGGACACAGGCAGGTAAACTTTGAAAAAAGCTGGGTAgatt--------tgttccagcaatgaaggAGGTTCTGGGCCGATATCCACACCTGGAGAAACTGGTGCTTGGGGCCTTGGGGAAGAAGCAGATAGTAAATATTCCTaatagaggagaggagaggagaagagagagaggagagcagaAAGGAGCTTGGATAAGCTCTAAAGACCAACTTCTCCTTCCCAAGTTTGCCTTGGGGAGCAATCCAATGAGAACCGATTAGTGCAGGTCTTAATGCTATGTACGTGAAAGTGAG-TAAGACTTATCGAGGGGAGACTAATGCAAGCAAAGCCTTGCATTTCCAAGGAGTAATTAAAATTCAGCTTGTGAAGGTTCCTGATTCCCTATCTCTCTGGGTCCTGCAGGGGAACAGTTAG-ATGGGAGAACCATGGTTTAAGTTCTCCTGGAAAGACTGTGTTAAAGAAATCAGtattacagaaagaaagaaaaatgggaactACTAGGAAATGTTTCAAAGACACTGTATCATTGTTACTGGGAAGAAATGCCACGCATAACTCCCAAGTAACTGTTTATATGGTGGAAAATcgattttgaaaaatataagcaGTGATCACAATGGAGACCTACCTAGCATTTGAAATAAACCTCCCTTAAGCAgaacataattattttctttggctTGTAAAGCACTGACTGTCATAAAcgataaaatatttacttaatgcAACTGTCCCTAACCTGTTTATCAAATATAACCACTGCCACAGAAATGAAATCCTGGCACTTGCATCCAGACATATGGGTAATATCT-GCGGCAGGGG--GTCATCTCCTAGTGAGAGGCAGTGGGGGGGCAT---CCAAAGGGTC--AACATGACAAAGGTCCTTACCACTGCATTCCCCATGTGGACTGCCCACTTACCTACCCAGCCACATTTTATCTATGGTAGAGATTTATGTTCTA-CCGTGCAGAACACATTTAtcacataaatttattttgaatattgaaGCTaaactggattttgtttttattgcatctttgACTTCTTACAGCAAATGTGGA-----TTTTGTACCCACTTCCTGTTTGGAAAAAGATCTAGcctactaaa

a score=18370
s chr3           143667557 1113 + 160039680 TTCTTTACC-------ACCTGAGAAAAGGTGTCACCTTCTAAAGAGTGGTCTTTCTTTAAACTTCCTTTTACATGATTAGA-------AGGGCAGTTCTT---------TCAGTTTGTGGGGGATTAGCTCATCAGTCACTTTATCA------------CTGAACAGCATGTGATGCTGAGAATTTTTTTTTCCAGCAGAACAAT--CTAGCAATGGTAGTTAAGAACTGGTTGCTGTAGCTGATCAGTGAGTAATTTCACAGGAGGCTAAGACATTTGGGATTGTTTTA-CCTTCCTGATTTTGA-GTAGGATACACAACCAAAGAAGAAACTTACACATTGAAAAACTATAGTTAAGTGACTTATCCCATGGCTGACATATCTGTGACAGCC----CCAGGCTTAAAGAGGCCAGTAAGAGTGAAGATCTTCCCAAAGATACCTGCTCACGATTTCAGAAGGTTCTTTTCAATGTCCCCACTCTGGAGCAAGCATTGCTCTGGTCTGGTCATACTCATATTAGGG------------ATAGC-----ATTAAATAGATAATACTTTAGGTAGATGGGGAGT------------------GAACAGGCAAATAAGGCTCAGAA----------GGTCCAAGCAG---------------GACGGCTACTCTGC-------------AGCGCCTCAGCACTCAGGATCAATTCATAAATGTCCTCTGAGAAGAATGAATGAGGACAGAGCCA----GTAATGGCCAAACAAAGCAATCACATGAACAAGTAAACAGGAAACAGCAATGAAAACACTGGAAATTG--TCTGTAAATAGCAACGCCAGGCAAAGGGAATTTGGTAAAGGCAGAGGAAAGAGTGGCCTTGAACCTCAGATACCACAAGAGGA-CAGAAAATGTGATTCACCTCCAGGCACGTCCTTCTCAAATTATTGCATTGAGCGAAGATTTTACAAATTCA--AAGACATTTACCAAGGACACTGGAGTATTCACTTTGGATCAGTGCGCA---------CACATCCATGGCTA----------------------------------------------------------------------------------GCTT-------------------------------------------------------------------------------------------------------TCAGTTTCTTAAATGTGTTGCAATTAATTACATTTTAACTCAGTTAATTTCAACAGACAAGAAAAGAAGCCAAGACAAAGAACCACAGAAGGTTAAAAAAAAAAAGTCCAAGAAACTTAATAGTTTTTGGTTTTGACACCATCATTACTAAACAACCCACTAAATACAACCTTCGGCCTCTGAAGATGA
s HiC_scaffold_1 129871390 1403 + 233722169 TTCTTTACCCCATCTGGCATGTGAAAGGCTGTCATCTTCTGAAGAATTTTTTGCCCTAAAACTTACTTATAGCTAGTGAGAGATCAACAGAGAAGCCCTTGAAAGCTTTTCAGTTTGTAAGTGACTAGCTACAAAATCACTTTGCTAACTAGGTTAGACTTTGGCTACATAAAACACAGAGA---TTTTGTTGAAGCAATGTTATGTTTGACTTTGGCAATTGAGAACTAGTTGCTGTAGTCAAcaagtaaataatttaatatgCTTTTAAGAAGTTTGAAATTTTCTTAACCTTCATTATGGTGAAGTACAATATACACACAAAGAAG---CCCACAAATTGAAAATATACAGCTCAATAATGTATCACAAAA---ACATCTCTATGACTACCACTCTCAAACATAAAAATGCTA--CAGAAGGCAACTGTTCCcactaatatttattaattatttcacCAGATACTTTTTTGTACACCTACTCTGTACTGTGCATGGTGCTAGGCATACTGTAAGCACAACAGAGTGTGGGAAACAAACAGTTAACAAATGAATATATAACACTTTGGGCAGACACAGAGAAGCAGAGCAGTTTAAGCAGAACAGGGAGCCAAGGCTCAGGACAGCTGTGTTAGTCCCAGCAGTGTTGCAGAGTCTGGGAAGCAGGCTCTGGCCTTGTGTTTCCGGGTGCCT-AACCTACAGCGTCAATTCATAAAAGTCTGCCAAGGGCAGGGAGTGGCAAAAGAATCACATATTCATGAAAGAACAAAGGAGT---ACAAACA--CAAACAGGAAACAGCAA--AAATACCTGAAAATTAGCTTTGGGAACAGCATGGTTAGGCAAATGGCATTTTGGTATGGCATATTAAAAATGGCCATTAAATTTCAGACCCTGTGCTAGGAACAGGAAATGTGATTCACTTTCACGTATTTCCTTCTGAAATTATTGCACAGAACCAAGATTTCAGATGTTGAGGAGAACTTTAAACACTCACAGCAGACTACTGAATTTGGACCAGTGTTCACCCATGTCTCCCATTCATGGCTATCACCcgggctgttttgttttgttgtttgtttctttggtactAAAGATTAACTCCAGAGACCTCATACTAGGcccttttattgctttcttaATGTGAGACAAAAACTTGGTAAATTACTAagtcccaggctgggctgaaatttcagatcctcatgcctcatcctcccagaatgTACCATTTTGCCATGCTCAATTTCTTAAGTGTTTCCTACTTCATTCCATTTGAATTCAGTTAATTGCAGTAG--AATAAAGGCAGTGGAAATAATGTGCCATAAAGGGT-------GAAAAgctcaagaaaataaacaatgttcAGTTTAG-CAAAGGCATTGCTAAATGACCCACCAATTACCTCCTTCGGCCTCTAAATTTGA

a score=80160
s chr3           143670303 2573 + 160039680 TCATAATGGAGCTGTATCAATAGTAACACAAGGATGAAATTCAGTATTTGGAAAAACCTAGATAATCCTTCATTTTGCCCATGCATGAATATCAATTGCATTTCTG-CAGTTTGCTTTCAATGCT-------------TAGATAAGGCAAGTACAATCATTGCTGTGTGGATGATAACAAATATCTAAGATGACATTAAAAATCATCATGACCATCTTTTTCAGTATCATTATTATCCT---------AGCTacta----acaattgagaatttcctaaatgccaagc---ctcctagcattttctccatattaattcatttaatctttccagcaaagttgtaaataggcaatgctattttcccca---GACTCCTAAGACCCTGAAAAATGCATAAATGCAAAAAGTTCATTTCAATGCAATGTGATGTTGTTATGAATTATATGTGATGTTTAAAATAATACCTAAAAGCAGCTCTCAGTGGTAATATCCAAAGAGAATTAAGATTCCTCTTTGCCTGGAAACCCTTTGCTTTTTCagagagagagggagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagaCTAAA-AGTCTTTAAATATT--TTTATTTTCAATTTCATCTCATACTTTTCTAACTTTTCAAGGACAGAGTCACCAGTGGTAATCGTTACAATTGCTGCGTATAAGTGATGTTTGAGAAGTTATTTGTTCAGATAGAGAAGGTAATACAGATGCTGTGATGTGATCCGGCGCCTTCCTGAATAAGGGGAAAGGGCATACCAATTGAGACGTAAGCAAAGGAGCTCTCCTTGGGAATTTAAAGCCCTGTTTCATTTTCTGACCTCACTACATAGACTTGCACACTATCCAGGGCTGCCATTGGATAATAACTGTGTCCAATAACCCCAGGGACCCAACCAATTTATCATGGACGCTGCTGGAGAGATTTTCGGTTTCTTGCACCCCAGTCTTAGGCTATGGGGTCTAGGGAAGCCAAAGGGTTGCTAATTGCCATGTTAAATTCTCCTGGCCTCAGCTATTCTCTCCCTTGTGTCTCTCAATCTCTCAGTCCAATTGGGGACGTCTGCGGGAATTTATCCGCACGCCAGGAGCTCAAAAAGCATTTACTGCTAGCCTGTGTGTATTGGCAGAGGAGAAAGGTGGTTTCCGTCAGGGTGGCTGTGCTCTGCATTTTATGATGCCATTTCATAATGGGAGGTTGCAATCTTCTGCTGACTGTAAGATAAAAGGGGAAGGAATTCACAACAACTTGTGTTTGGGGAAATGTTTTCTTGAATTTAAGGTTATCTATCACGATAACAGTTATTACTAATGTCCTTATCTGATGTTGTCTAAATAAAGTCCATTAACCGACTTTACATTGCTGGGCCCCGTTGGTCTAACTTTATTATAGCTCTAGATACCCTGTTCAAAATAATAATTCTAGAATTGATTTCTACTCCACCTTTGCTTAAAGACCCCTTGACATCTGCACTGGATTTCTAGAGTTTAAGATATTTGTGACATTGAATATTGAATAAAGACTTGGCTAAGATATTATGTCAACAGAATCTTTAGGTGCCCTTTCTTATGTAGGAATTTA-----GACAATTT------AATTGTATAAATACACAATAGTTAGCTCAGGGTACCTTCGAGTTTAAATTTTCTTCTAGATGTAGATTAGATATATTTCCAATCTTTTCCCAAATTCACCTTGTAAATATGGAAAAGTATGTCTAAAAACAATTATGCATGATAGCATCC-TGACCCTACCTCTAAA--GTGACCTAAAGCAAACATAAAAATACATTTCTTTCCATAGCACATTCATACATGAAATACTACAATTCCATTTACTGAGA-TCTTTTTGA------------AAAGTAGATACATTG----TCTCAAATTGAAGACAATGATGATATTTG-------TGCCAAAAGCAAGGTGATATTAATAACT-CTCATCTCTAGGCAGCAGTAGGAGAGGCAGTGAGATGTTGTTTGATGCATTTGAATATTGCTTATGATTGATATAACATAAGTGTGTCTCTGTAAT------------CCAGCCACAATGAAGGGATGTCCCAA-------------GGGGAACTGGTATTG---------------------------------CTCTTGGTGGGTA-------TATTCTTCCAAACCAAGAAATGGAGGCTATTGTCCACAATCACT------AAGAGGTTAGACATCTGTAGCTCATCCCCAAAACAGTTGTACTTTGTTCTCATTCTTTCT-ATGTCCCTTCCCTTCCAGATGTGATTAAGA-TCCCAGTCTTTTCAG-----------GGGAGATGCAGTATGGTGTG-----------------------GTTGCTACCACTAATAAGGTAGAAGAT----------TCATG-AATGTTTTGGAGATGTAGATTTTCCATATGAAGTATTGAAAATAAGATTGTCTACTCTTGCAGAATGATTTGTGAGAACTGTATAAAACATAATGAATAAACTGCT-------TATATTTAGGATATGaagggtcc-ccaaagactcacttgcttaaacgatggttgccaacttgtgatgttattgggagatggtgatactctttccagttgatatcctacaagacagacactagattattgggagtgtgcccttgaaaggtatatt----tagagtccaaccctttctcttttgcttct
s HiC_scaffold_1 129874111 2654 + 233722169 TCATGATTAAGCTAAATCAATATAACAATGAGTGTGGAATTCAACATTTT-AACAACTCATGTAATCCTTCATCCCACCAGTTACTAAATATTAGTGGCTTTCCTGACAGTGTGCTTG-GATGCTGGAATTTTAACCCTAAACAAAACAGATATGATCCTTGCTCTGTGGGT-----------TCCACAATCGCCGTAACCTTTGCC--GCTCTTCTTTCTGCATGTCATCATCAACATCAGGATCAAGGCCTTTATAACACCGCTGAGAAATTCCTAAGTACCAGTCACTCTTCTAGCCTTCACT----------TTATTCAGTCTTCTCAGTAACGTGGTAAATACAATAAGCTACTTTCCTGATGAGAATACTGAAAGTCTACAAAATTGAGAAACATTAAGAGTTCATTTCAATAAAATGTGATGTAGCTATGCACTGTATGTGAATGTTAAAATCATTCCTGAACAGAGCCATCAGTATTGATTGAGAAAAGGGATTCAGATTTTTCCTTTACACATTCTCCCccgctt--------------------aaaaagaaaaa-----------------------------------------------actatataGTCCTTgaagtctattttattttcaatttaatc-cTTACTTTTCTAAATTGTCAAGGACAGACTCACTGGAAGTAATGGCCACAATTGTTTTACATCCTTAATGTTCTGAAAGTCATTTGTTTAGATACAGAAGGTAACGCAGATGATGTGATATGCTGAGGAGCTTCCTAAAGTGAAGGGGAAGGACGTACCAACTGAAACACAAGCAAAGGCACTCTCCTTGGGAATTTAAAGCCCTGTTTCATTTTCTGACCTCACTCCATGGACTCTCACAGTATGCAGGCCTGCCATTGGATAATAACTGTGCCCAGCAACCTCAGGGACCCAACCCATTTATCATCTCCTTTGCAAGAgagttttt--gttctttgtatccT-TTCTGGGGCTGTGGGGTCTAGCGAAGCCAAGGGGTTGCTAATTGCCATGTTAAATTCTCCTGGCCTCAGCTATTCTCTCTCTTGTGTCTCTCAATCTCTCTGTCCAACTGGGGAGGTCCCTAGGAATTAATCTGCACGCCAGGAGCTCAAAAAGCGTTTGCTGCTGGTTTGTCTGGATCAGCACATGACAAAGGTGGTTT-AGTCAGGGTGGCTATGCTCTGCATTTTA-GATGCTGTTTCATAACAGGAGGTTGCAGTCTTCAGACTACTCTAAggtaaaagggaaaggaattCACAACAACTTGTGTTGGGGGAAATGTTTTCTTGAATTTCCGGTTACTCATCAAAATAACAGTTATTACTAATGTTCTTATCTGATGTTGTCTAAATAAAGTCCGTTAACTGATTTTACATTCCCAGGTCCAGCTGCTCTAACTTTATTATAGCTGTCAATACCCTGTTCAAAATAATAATTCTGGCATTGATTTCTACTTATTCTTTTCTTAAAGATCCTTTAACATCCCTACTGAAtttccagaatttaaaata-ttgtgtcaTTGGGTG------GAAGCTTTAA--AAGGTATCATATGAACAGGGTCTCTGAGGACC--TTTCTATGCAAAATTTTAAGAGCAACTATGTTCCACAAATTATAAAAAGAGCGAATTGTTTTATCC-TCCAATGTCaactttaaatgtatttctaGACA-GCATAGAATGTCTTTACATCAGTTTTACAAACTCATCCTACAAATATAACAAATTCTGTTTAATAATGACTAACCATGATACTACCCTTGACCTGATCTGTAAGTTTTAATTTGAtctaagaacaaaagaaaatctctCCTTATTGTGGACTCAATTGTGAAGTATTACACTACCTTTTAAGAAAAGTATTTTTGATGCTTATTTGATAAAGAATAGACTTTGTGACTCACAAATTGGAAAGAAGAACAATGTTTGCATCACTTCCCAGAGGCAAA-----ACCAACAATTATTTCTCTCTGCGCAGAATTAGGAGTGGTGGCCTAATGATTTCTGGTGTATTTGACTATTA--TACTATTGATTT--CAGGGGTGGAGAT-TGTGATTAAGATACTACATCAATCATAGGGAAAGGTTGCCTCAAAGAAATACAGAGGGAAGGACTGTGGTTGGTTACCATATGGCTATGGTCCCTCCTTGGCTCCTTCCTGCTTTGTAAACGTCTTGCTTTTCCAGGGTAAGTGATAGGGAACAACTCCTATAATTATTAAGTAAAAGAGTTTAGA-GTCTGGATTTTATTCCTGAACAAGTTgcactttgttttcttccttaatggtggttcttttctttcaggtATAACTGAGACTCGTGGTCTTTTCAGGACCAAACTTAGAGGGTCACAGCTTGGAGTGAGAAATATCTGAGTCGTAGCCTTATCCTTGGCATGAATAAGATGTGAGACCCTGGGCCAGTCATACAATCTTTTGGAAGTTCAGATTCCTtatatgaaa-attgaaaataagataGCCTG-TCTTTTGGAGTTGTATGTGAGACTTTAACTAAACTTCATAAATACACTATTGAACTGCTATACTGCGGATCTGAAGTGACTGGTGAAGACCTATAGGTTAAAGatttggtcatcagcctgtggcagtATTGGGAGTGGGGGAAAATTTAAGAAGTGAGAGGTTTAGTAGAAGAAAGTTAGGTCACCGGGGGCATCATCTTGAACATCATGTTGGGATATagccccttccttttttctctgtctct

a score=39846
s chr3           143675651 1133 + 160039680 CCTCTTTTAAAATAAAGTATAAGAT-ACACT-----ATCTGCCCTTTTTTTTTTACTTCCAAAGTAATTTCATATGTATAACTAGCAAAGCATTCGTCATGTCTTTTTGCAAAGATTGCATTTTGTTTAAGTCTGACCCACAGTGAGCAGGGAGCAGTTT-AAGGACAGAAACAAAGCtttccaaggccaagagatacaaatcctggcctatagtagatgcccaagaaatgtcttttgagcaaaACT--CTATTTAAAGAGACATATGTGGTCTGTAATAAAATAGAGTAGGGCAAAAAGAATTCTGTTGGGTTAATCTCTTTCTATGGAATACAAGTAGAC-TGTAGGGAATATCAGAGTTACAGTCAAGAAAATGTAGTGAGTAGATGTTAGAAGCGAGAGACTAGTTCTGCTGAGGGGAAGAAA---GTTCATTTTCAGGCACTTCCTTCTGTAACCAGG-GCTCTGACCTAAGACTCTAATGGTTGGTGTAAACAGCAGAATTAAAAACCAATCAATATTTTCATATCAAGAAAACTTTGAAACTTAAGAGACTTGGGTCTTAAATTTAGACCATAGAGAGCCTATTTGGCCTCAAAGACAGCCTAGGAGAAATTGGCTGTCGTTGATGTTTCCTATTAAAATGTATGCCATCCATCATCCTAATAGACCAGCCCTATGATTTGTCCATCACATTATGAGAACAAAATGCTATCTTGTCTCCTTGATACTATGTCTTTTTAAAAAAATGAAAGAAAGCAGCAAG-GTGTGGGGGAGA----GTTTCTTCTGACAGTCCTTTCCCGATATTTTTTTAAAGTTGTTCATAACACACAAGGTCTGGCATCAGGAGTAATTACAGTAAACCATGTAGAAATCCCCAAGGAAGCAGGCAGGGAGGATAATGTTTGCTACATTAA-AACTTACAAGGAAAGGACCA--ACTGTGAGAGATGTGAAGGTGAATAAATCCTTTTGAG-GAGGATCAAATGGATGTGATGGTCTTACCTGCCTAAATCAGCATCTCTTGGATGCTC-TGAAATGCAAGTATGATTATGAAAGACATTTCAGAATGCATTCTGC--TAACTGGCAAAGCTGTGCGCATGGCAGGCAGACGGGTGTGTGTGAAGATTGTGACCCATGATGATCATG
s HiC_scaffold_1 129880105 1121 + 233722169 cctattttgattggaattataaAGTGACACTTATGAGTTGGTTCTTCCATTTCTGCTCTCAAAGCACTTT-ATACACATAACTAGCGAAGCATACATCAtgtcttattactttgttt---ttcttcttgtctttgaCCCATGGTAGATGGTGATCTTTTTTGAGGACAAGGATCACGGTTTTCAAGGCCAAGAGATGTCAATCTGGGCATATAATAGACATATAAGGAATGTCTTTTGAACAtaacctactttttaaaaa--------tagtctgtAGCAAAACAAA------CCAGCAAACTTTCACTGAGTTAATTTggcttcaagaaataaaaataaaaatgcagaaagcaGGGAAATAACAGCCA-GACAAGAGAGTAAATAGATATTGAAGGTAAGATATGATTTAGCCTTGAGGCAGGAAATGGGTTCATTTTCAGATACTTCCTTCTGAGACAAATTGCTCTCCACtaacattttaatgtttcttgCAATGAACATAATTAAGA-TCAATCAGTTTTTTTATATGCAGAAAAGTTTTAAACATA-GAGACCTGACTATTAAATGTAGACCAAACAGAGACTGCTCA-TTTCAAAGATATTCTAGGAAAAATTTGCTACAGTGGATGTctcatattaaaatttaaaccaTCCATCATTTTAATAGATCATCCATGTGATTTGTCCATCACATTATGAGAACAAAACGCTACCTCGTCTCCTTGATACtatgtctt------------aaaaaaagaaatgggtgtGTGGGGGGAACACtgttctttct--ctgtgtttttctt-tctttctttgaagctGTTTATAGTCCACAAGGTATGGCATCAGGAGTAATTAGAGTAAACCATGCAGAAATCCCAAAGGAAGCAGGCAGGTAGGATAATGTTTGTTGCATTaagaacttaaaaaagaaatctcagtgttttagaGGACAAGAAGGTGAATAAATCCTTATGAGAAAAGattaaatgaatgaatcagtTTTACCTGCCTAAATTAGACTCCCCTAGCCATACGTGAGATGCAATCCTAATTATGGGAAAAGTCTGAGAG-GCAATCTTTAGTAATTAGCAAAGCTGTACACATGATGGGCAGAGCAATGGTTTTGAATATCATGACCAATAATAACTGTG

a score=37903
s chr3           143678161 1053 + 160039680 aaaaTGCTCAGAGCCACCACTACCTTCAGGAAATGGTCCCTGCAGTAGGT------GATAAGCCTCTCTCCTAAACTGAGCTA-GCCTCTGTTC--TAAATGGGACAGCAGGTGTGGCCACAATTCAAACAGATGTTTCCACATGTGGGAGCTGAGGTTTGAGGATCTCTCTGATGCCTTCGCCTTCTCCTTTACACCTGTCGTTGTGGCCATGCGTGTTC--AAGCTCTCTT-CTCTTTTGCCTCACATTAGGCCTCAACTTGGTA-GAGCTGTGGGTTGTGGCATGCTATTT-TCTCTCATGTATTTTTAGATGATTGTTAAAAAGCCTTTTTTTCACATTGTTCTTG-------------GGACTCTTGATTTTCATACTCTCTGGCC--TGTTTTAATGTATGACTTTATAGGAAGGAGGAAAGAGATGAGTGAGGAGAGACAAGAGACAATAGAAgagagaggaggggggggagagaagaagggagggacggagggagggaaagagggTGGATAGTAGAGTAGTAGAGGCATGAGTTTTAGCAGCCTCAGCCTCAGGCATTTGACCTTGGCCTGGGTCTGTTTTGACATAGGAAGCTGAACTGCCCCGGGAAGACATTAAGGGAACAG-AATGACTGTTTTGTCAGGTCTTATTGTTTAATTAGATCACAAGTTAAATCTCAGTTTTAAAATTCTTTTGGCACATGCCATAATTCTCAGT-CTCGGTGTCAAACATTTCCTAGCAGCTTTCTATACAAGGCAAATAG--CAAGGAAATTCAATATTTGAACCACCttatttacttatttttttattatttttttaataaCAGGCTCTTAGAGTAAAAAGTTTCTAAGTTTCTAGTGGTTAATCATTCA----TTTTCTGGAAGTCATTGCACCCCACGGATCTCAAACGTTCCATTCAGTTTCAGGCTTCCTCCCTTCAATTTATGTTCAATGTTCT------CAACTCCTGGA------GTGCTGGTTCCTCCCTACACTCTGTCCATGTTTGAAGACTTCCAATGCTT---------ATTCATGAACTCTGACCTGGTACTCTCCAGACATAATAGAGATTTAGAGTACCAAAA
s HiC_scaffold_1 129882690  999 + 233722169 AAAATGGACAAAGCCACGA--GACCTCAGGAAGCCATCTGAGCAGTAGGTAATGCTGATAAGCCTCTCTCCCAGACTGAGCTCTGCCTCTGTGTGTCAACCAGGCCAACAGGTGTGGCCACAATTCGAGCAGATGTTTCCACATGTGGGAGTTGGGGTTTGAGTATCTATTTGCtgcctttgccttttcttttatgTCATTCATTGTGGCGATGTGTGTTCTCAAGCTGTCCAACTCCTTTGCCTCACTTCGTGCCTCTATTTGGTAAGAGCTGTGAGCTGTGGTGTGCTATTTCTTTCTTGCATATTTTTAGATGATTgttaagaactttttttttttttttttttttgcttttctgttttgagactCTTGAAT--CAGACTTTTTGGTCACTTTGTCAGTGTATTATTTCATagcaaa--------------------------cagagaca------gagagaggatggGATACAGGGAAATGTAGAG-------------------------ATATTATTTTTGCAAAGACA---------AAAACTTCAGCCCAAGCTGGATGACCTTGCCCTTGCTCTGCTTTGACACAGGAAGTTGAACTGCCCCAGGAAGTCATTAACAGAATAGTAGTGGCTGTTTTGTCAGGTCTTATTGTTTAATTAGATCACAACTTAGATCTCAATTCTAAAATCCTTTTGGCACATGCCATAATTCTCAGTCCTTAGTGTCAAATACTTCCTAGCAGCTGCCTGCATAAGGCAAAAAAACCAAGTAAATTCAATACTtgaacc--------------------tattttttttttaatagcaacTTTTTAGAGTAA--------CAAGTTTTTACTGGTCAGTCACCAAGCATTTTTTTGGAAGTAATTACACCCCATGGCTCTCAAATGCTCAATTTAACTTC------CTTCCCTTCAA-TCACATTAAGTGGTCTGTACTACAGCTAGCGGATAAGATATGTAAGGTCTTCCTAACATCCTTTCTCAGATTGA-------CAATGCTTTCTTTTGGAGTTCATGGACTATGACCAGAACCCCTCCAAACACAAAGTAGAATCACAGTTCTGGAA

a score=16259
s chr3           143687284 515 + 160039680 AGGTCTATCTAATAAGACATGGAAGAAATCTCAGTTTTTAGGACCCCAACAAAAAAATCTATAAACCCGAAGGAAAATAATTTCCATTTTTTTATTAAACCCCATAGGA-----ATTGGGCACTATTGTTTTAA----TGTCCGTGTTTGTTCATTTACATGATGGGTAAATACTACATGTCAGGGGTGACATGTTGTCTTAACCCTCTCAGAGGCGTATGAACTCCAAAATCTCAGCCAGACATCCATCAACTGACCCTCCTGGGGCTGGTAACATTCTTCCAAATGAACCTCTGCTCCAATCAAGCCTTCCTTCATGCTTACTATTCTCTGCATAAGCCTTGCTAATTTTAGTACACATTGCTCTgaatcatagcatgtcagagctgaaaaggctcttaaggcttaggagcagccctcctcaatttactcctgaggagacACATTTCAGTCATCAGTCATCCCTCAGAACCCAGCTCACTTCTCTCGCATTG----------TCACTCATAGTGGCTATGGGAACAACTTTT
s HiC_scaffold_1 129887744 485 + 233722169 agCTTTATCTAACAAGACA-GTAGGGAATCTCAGCTATT-GCAGTGTTACAGGAAAACTTTTCCCCCTAATGTTGAA----------------ATGATATCCCACAGAAGGTGTAATGGGTGCTATTGTCTTAACAAGTGCCCCGGCTCATTTTTCACAACGGTAGGTA--CACTGCA-----------ACACGGTCATTTAACCCTCTCAGAGGAGGACTAACCCTGAACTCTCAGCCAGACATCCATCAGCTGACCTCCCTGCAGC---TATCATTTCTCAACATGCCTCTTTGCTCCAATCAAGTCACCC----TGCTTCCTATTGTC----TATGACTTGCTAATTTTAGTACATATTGCTCTGAATCATAGCATGTCAGAACTGAAAGGACTCTCAGAGATGTAGACCAGCCCTCCTCAATTTGCACCCGAGGAAATACATTTCA-TTAT------TCCTTCCAAACCTGGCTCACGTCCCTCAGATTGCTTTCCCTGCTAAGTTGTAGCAGCCTTAAGAACCACTTCT

a score=80614
s chr3           143691920 2359 + 160039680 AATATTTCATTCTTTATTTTTAAAAATAAGTCAGCACTTACTTTCTTACTATAAATATTTATGACCCGTCCTACTTTGTCCTCTGACTTCATGATGAACAATAGTCT-ACCTAGTGAGAGCAACCTCAGGACCTTCCCAAACCTTGATGTCCACAGGGCTAGATTCTGGAAGAGAGCACTCCAAAATCAATGTGCTCAGGAAACAAGATAAAGCTTCCAGGGACATTCAACAACAGTGCTGCCAGCCAGCCTTGTCTGGGGATAATTTGATCAATTGACACATGTGTCCAATGGGTCTCCATTTCACATGTGGAGTGAACATGCGAAAAAAAAATGAAAGGGAAAAAGACCAGAGAGCAGTTGTGTTTGTCTGGGTCCACAGTTTCTGTGATTGATTCTAGATGTGGGATTCTTTCTCTTTTGACACAATCAATTACTCTGACCAATTTCTTCTAATATGGGATCTGTGCATACATGCCTCCACACTGCAGTGTTTGCCAGGAGACTCATTATAATCATCATTGCatatttattgagaacccactgggcaccgaacactgcactaggcctgTGATCAAGAGAAAACCTATTTCCAGCCAAGTCTCTTTGTTTCTCCCCTGCTCTGGGAGTAATAGCACACCTAAGGAA-GTGGAATACCACACACAATCAAATTTATTATCTGATTTGATCATTATTTTGATTGCTACTTATGATTTATAATGGAGGTCATTATTTTATTACATACTTTCTGTATATAATTAAGTTACTTTAAATAAGGACTTTCATTCTGTGCAAGTTAGTAAGAATAATGCATTTCTGATTTTCCCATCATAGGCTGAAAAGAAATTGAGCCACA--AAAAGATATTACACTATTGAAGGTTTTCTCCCTC---AAAATTTAGCATACATTGTACATTGAAATGGGAAAATTGATGGCATTTACTATAAGATAAATGTCATTGTTTCAAAAAAATTATCAGAGCTGTGCTGAGCAAGTCAAGCCCCTTCCAGGCTGAGGACAGCTTGAATGAATTATCTCATCACCTTGAAAGTTTCAAGTTTTAAAGCTTGAACAGTTTTGTTTTTTTAAAGATCACTTTGttttagtatatgtgatgccgaagcgagcacAAAAGATCACTTTGTTATAGGTGCATGTATATTCTGTGAGACAAAAAAAAAGAGCCAAATTGATAAAGGAAAGGGGAATAAAAATCTGTATCGTATCTCTCAAAATAGAATTTCATA-ATTTTCACTGTTAGAGCATTGGTTTATGTGTCAGGCAAACTCTGATCTTAAAATATCTTTCTGAGGCATGATTTTCTCCAGAGACAATTTGCTGTCTTGATATCCTCATAAGTGAAACAAGAATAAATATTTTGTTCCACAAAATATTCCTCCCATCATTCCCCAGGTCCCTCTGACTTGTCTTTGTGCAAAGGAAGTTGTAGCCATTTTCTTTTTAGATGTTTTCAGTCTTCCAGAAAG-----------AACAAACAGGAATTATTTCCTAAAGCCCTAAAATCTGTGTATGCCGGGGCAGGGTTCACATATCAGATCATTTGAACTTAATATCCACTAACTGTGTCAATTTATTTTCTTGATTTTGATGACCTTGTCTTACTCTCTGCTGTAATCTTTCCCTTCTTTCCCAGGCCTCTCCTTCCCTCTCTTTCCATAACTAGGCACCCGAGTTATGTGCAGGCTGAGGGAACGTCAATGGTCACAATCTGTTCCTTCTCGCTCTGAGCTAACAAGTGGAGAAGTTTCACTCTCCTGTCCAGGGCCACTTAGCATCTGAGCCAGTTGGGTACACTCTGTGCACACTTCAGACAATGAATCTTCATTATTGTGCCAG-GTCTCCTTGGAAGCCACACTGGATGAATTAGTGAGAAGCACCTCCTCTCTGATCATAAAGAGGAGCA--------------------------AAAATGAACTTACGCTGCGGTGGCCAGAACATGTTTCTCTC---ATGAGTCGAGAAGTCATTTCGTTTCCTACTGGCTCCTATTTTTGGTATCTGAATTTTT-ACTTAGTTACATCA-AATTAATTCATCCATCAGTGTAAACTTGGATATGTTTACATTCTTTGTTAATCCTTAACTCCTGTGCAATGCTTATAAAAACACCCTGACTAATAAGAATACAATCAAGTTCGGA------ACCATAACTTATCCACCCAAGGTGTCCATTTTCTTGGGATTCCTCACAGTTCCCAAGAGGTCCAATGTCAT-GCAGAATCTTCACCCCCAAACATG----GGCATCCTCAACTCCACAAGAAGTGCCTTTCTCTCCGTTAGCCTGAAAGAAACCATGAATGCTAGCTCGTTAATAGTGGTTTTACTTTCAATACCAACTCTACCACATAAAAGAACAG
s HiC_scaffold_1 129890912 2143 + 233722169 aatatttgatt----attttt-----taattcagtctTTATTTCCTTAACATAAACACTTATGATACTTACAACTTT--TATGTGACTTCAGTGAAACTAAAAGTCTTGCATAATACCAGCAAATTTAGGATCTTCCAAAGTATTG-----------------CTCTGGGA-AGAGCAGCC---------TGT-TTCAGAAAAGAAGGTACAGCTCCTGGAAACATTTGACAACAGTGTTACTGCTCTGCATTGTCTCTGGATAATTTGATCAACTGAGACAGGTGGCCAGTGGGTCTCCATTTAGTATGCAGgatatccaagaaaaaaaaaaaactgaaagaaaaaagccaTAGAGTAATTGCATTTGTCTGG-TCCACTGTTTATATGATTGATATTGGATATAGAATACTTTCTCTTTTGACACAATCAATTACACTGACCATTTCTTTCTAATTTCAGA-----------ATACCTGCATACTGCAGTGTTTTCCAGAAGACTCATTATAATCATCactgaatatttattgagaaccCACTGGGCAGAGAGAACTGTGCTAGGCATGTGACCAACAGAGAGCCTGTTTCCAGGCAAGTCTTTTTGTTTCCGTCGTGTTCTGGGAGTAATAACATATCTAAGGAAAGTGCATTTCTACACATAATCAAACTTATTAtctgatttgatcattattttGATTGCTACTTATGATTTATAATAGAGGTCATTATTTTATTACATACTTTCTGTACATAATTAAGTTACTTTAAATGAAGACTTTCATTCAGCTCAAGTTAGTAAGAATAATGTATTTCTGATTTTCTCATCATTGGCTGAAGAGAAATTGAGCCACAAGAAAAGATATTATACtagtgaaggttttttttttccaaaaaatttaaCATGCATTGTATATATAAATGGAAAGGCTGATAGCATTAAGTATGAGATAaatttcattgtttc-aaaaaACTACCAGAACTATACTAAAGAAACTAAGTTCCTAGCACTCCATGTGAGGCT----TGAATTCTCTCATCACATTACATGTTTCCAGTTTTAA-----------------------------------------------------------CAAGTACAAAAGATCCTTTTGCTATACTCACAGATACATTTTGTGAGAC-----AAAAGAGGCAAATTGAtaaaggtaa--gaaagaaaaatc-----agtgtctttcaaaacagaatttcatgttttttctttgttagtgAGTTGGTTTATGTGTCAGGCAAACTTTGatcttaaaatatctttcagaggCATGATTTCCTCCAGAGACAATTTTCTGTCTTgatatcctcataagtgaaacaagaataaatattttgttctgcAAAATATTCCTCCCACGACTATTTGTATCTCTA-GACTTGTCTTTGTGTGAAGAAAGTTACAGCCAGTT--GTTGGAGATGTTTCTAGTTTTCCAGAAAGCTTCTCTCTCActtaaatatttgtcattttctatcaTCCTAAAAATTGGGT------GGAAAACAGTCCTGTATCGCATCATTTTTCTTCAGTAGCCACTGTCCACAGTA------------GGTTCCAATCCCTTCATCT--CTCTGTGCT-----------CTTCTC------GCgtgtcctttcctctctt-------------------------------------------------------tctgtctcctccc--------------------------TCACTCTTAGGCCCA--GCCAC-CAGCA-CTGTGGCCATGGGGAGTATTCACCATTCCCTTCCGACA---AGCCTTCCTGACTGTGGCAGAGCCTTCCTGGAAACCACGCCAGATGAATTAGTCACAAGCACATTCTCTCTGATCACGAAGTAAAGTAATCTTGACTACGTGTGGGCTATATTTAAACTGAATTTAAGATAA---GCCTTGAATGTTTTTCCTTCTCTGAGAGAAGAGATATAATTTACCTTCCCACTGGCGTCTATATTTGTTATTGGAATTTTTGAATTAGTTGTGTCCTAATCAGTTTATGTATTAGTGTTAATTTAGATGTCTTTTCATTCTTAGTTGTTCCTTAAC-CATTTGTAGTATTTATGGAGACATCATGATT-----TCATACAGCCAGATTTGGGAGGGTCACCCCAACTTATCTAT----GGCTTCCTTTTCATC----TTCCTCA----TGCTAAGAATTCCACTGCCACAGCAGAATCTTCTTCTTCATCTGTGATCAAACattcttattttagaaaaaaaaaaatcact-tctgatCCCAAATAAGGGACAATCAACACT-GCTACTTTTTATAAGGTATATTTTCAAGAACAGGTCCGCCATGTAAAGAAAAAG

a score=4279
s chr3           143694345 95 + 160039680 ACTTTCCTCATGAAAAGTCTCTAACTCATGGGTTTCTAGGGACAAAATAACTTAAGAATGTAAATAAGCCATGGCCAGCAAAAGTTTACTTTTTT
s HiC_scaffold_1 129893255 95 + 233722169 ACTTTCCTCATAGAAAGTTCCTAATTTGTGAATTCAGGACTACAGAATAACCTGAGTCTGCAAATAAACAATGGTCTTCAAAATTTTACTCTTCT

a score=64776
s chr3           143695206 5816 + 160039680 [encoded data, 6807 characters]
s HiC_scaffold_1 129893632 6131 + 233722169 [encoded data, 6807 characters]

a score=44191
s chr3           143702904 1904 + 160039680 TCAAGTTTATAACAGA---------ATGTTTAAAT-GTTATGATGTGTTTTCCACATTTTGCCTG-CTTCAAAA-ACCTGAGGCACATGTCTCCTCAACATCCTGTCCTCTCATCTCTACTTTCTGGAGACAGACTCTCTCAGTGA-GGAGACAAGAAGGAACCAGTGAGTGTAGGCTCCACACCGGCACCATCACAATATCTATATGGAACCAAACAGAACATGTAGAGTCTCATCTG-CTAAATACTGAATTGATTGATTTTGAACACAATGATATCGGCTCCACTGCCCGTTTTCTAGCAGCTGAACACG----------------GGAGTGCCGTCAGGAAGCAATGTTTCCATAATTGC-------AAGCACATTGTAGAAGATGGGAAGTAACAGTTGGTTTATTTTTCACCATGAGTGTGAACCAtcacttaatgctcattacagctctgctaggtggattactatgctcatcttacaaatggaga----gggctggagagttaataggcctcccagccaacagcgtggatttgaacacagccttttcctcctccgaagcctatccctccacACCTGTGTGGAGCTGCATCACTGTCAGTGGCAAGAGTGGTGTTGGTTATTaaaccagtcaggaagaacacaagcaaggcacatgcattcagacagagcgaaaggaccacagacaattctgcacaccacaattggtgtcaccggcatcatttctggatagcacagcatagtcattaatgttcataatgataaaaccaagtcatcaaaaaaagattaattacattccatccattctgtttaagaaggcagagaagtgtgaaatccattttagaaagatttccatcaaaaatgattaaaattTTCAACTATCCAGAATGATTCATTCCCTGGGGTTTCTACATAGCCAGATATGTAAATGAAAAACA----CAAATATTTGCTGCACATTTCTTG-AAAGTGAAATAAAACAGCGcacacacacacacacacacacacacacacacacacacacacacacacGGAACCAAATGCTTTAAGTGTGTTTAGGATGAGATATTCCTAT-AGCGCTTACCAGAGTGTAAACATATATAAACTAGTGTGCTTTTATTTTTCTAAATAGCTT-CTGTGTGTATTTATTGATCAGCTGTCCATTTGAATGGCTGTCACTCCTGCCAGGGAGACT--AATTATTTTGATAATT--TTATTATGAAGTCTTTTAAAGAAGGATTGATGCACTCTCC-TCATTTTGAGCACATAGGTGA--------------CTGCATCTTAACAGATTCTTTAAAAAACGGC---------------------------------------------CTTTAGT---------GATAAAATCAATAAATGAATACTTCTCATCATCAGTGAAGTTGTTATTATGTGG----------------------TAAAAGAATT-CCTGCTGACCATAGATAGGAAAAGGATTAAATA----GCATTAAAAAATGGCAAACCTGATTGACAGGATGATATATATTTATTTCAAATCACAATCTGTAAAGTGCTGACATAGATATTTATTTACCTCAAAATCCTCCTTTCTTAGAAAATTTTT-GGCTTTTGAT-AGCACTCAATATGTATTG------------AATTAATGAATG---------ACACAACATTAATAATCAAGT-GGTAAAACTGATTTCTTACATAATGAAATGATTAATACAATAGAATTTGTTAGCAGTAATATGCACGCAAGTTAATCAAGCAATATCTGAAAAGTTATGTGTCAAGTTATTACATGTAGTCACACAGGTAAATCTCTCACCTT---TCCCTTTTATATGACACTTAAATGGCTGCAGCACATCCATATTACATTTATAATTAAAACAATTTATGCTGCATTATAAAATATTTTGCTACTCTTGACAAAATA-TAAGTTGTAT-----TTGGTACTGCAATAA----AAAGT---ATGATATCTGTTACCTATAATGTAGAATATTTACCA----------TGATAGATAGTCAAACCAGTCATTTAAGAAGGCAGAACTggg
s HiC_scaffold_1 129901907 1977 + 233722169 tcaatttcataacgGAGAACAGAGGATATTTAAACCAATATAA-ACATTTTCCATATtatgtagaacttcaaaacaactGAATTATACTTTTCC------------CTCCAGATCTCCACTTTCTAGAGGCAGACCCTTTCTTTCCTAAAGGTTAGAAAGTAACTGTTATAAAAAGCACC-TAAAGTCAATGTCACAAAATCTATATAAACTCAAACAGAGAACTCCATGCCTCACCTGTCAAAATACTTTAAT--TTGATCTTGTAAACAATCCTATCACCTTCACTTTCCTGCTTC------CCGATCACGCTAGAGTGTAAAACTTGCAGTACagtcaggaaa-aatattttcagaagcgTCATAAGTAAGGCCTCTAGAGGGGATAGgaactaat--tttatttatttttcatcctaT----------CCATTTATTGCTTAAGATATCTCTCTTAAGTGCATTGTTgtgttcattttacagatggagataCTGAGTCCAAGCATAAGT--GACCCCAAATGAAGAGCAAAGAGGCGAACTcagctttctcttcctccttagCCGA--AGTCTGCACCTACTCTTTGCTGCTTCACCAGTAGTGGCAAGAGTGGCAAGCGACTGTCCACTAAGATGGAAGAACATAATTTagatacaggatttcagaaagaCTAATAAGTCCACAGACCACCCTGCACATTGCAATTGATGTGGAAGGTGTCATCTCTGCATAGCAAAGCATAGTCATTAATGTTCACAATGATAAAACCAAGTCATCAAAAAAAGATTAATTACATTCCATCCACTCTGTTTAAGAAGGCAGAGAAGTGTGAAATCCATTTTAGAAAGATTTCcatcaaaaatgattaaaattttcaaCTATCCAGAATGATTCATTCCCTTGGGTTTCTACATAGCCAAATATGTTAATGaaaaaaaactgcaaatat----tGCCCAtttcccacaaaacaaaacaaataagc-----------------------------caccaggaagagaaaatgcagaaaagaatCC----ACTGAGTTGAGGCCTAGATATTCCTGCAAGTGCTTACCAGA-TGT----ATACCTAAGCTATTAGGCAGCCAGTTTT-TAAATAGCTTATTATCTGTCCTTATTGATGAGGAGTCCACCTGAATGATTGGTGCCCCTGCCAGGAAGGTCTGGATTCTTTTGATTATTTCTTGTACTGCAGTCTTTC-AGGACAGCTTAACGTATTTCCTATGGTTCTGAACACATGGTTGGAATGAGTGGGTCTCCTCCATCC--ACAGGCCCTTGAAAACCCAACTTTGCCTCAAGTATAAAAGAGAGGTTATTTTAATACTGAATGCTACTTTAGTTGAATTTCAGTTAAAAAGAACAAATG-----TACTCCTGCTCAGTCTAGTGCCTTGTGTGTGGtaagtattaaataaatattatttaaaagaattgtGTGGTAACCA---GTAGAAAAATGACCAGATGAGTCGTGTGAAGTTATGGTGCCCTCATGAGATGTAAGGATGCATTCTTATTTCAAATGATGAACTGCTAGATGCTGACATGGGTATTTATTCACTCCTGTATCCTCATTTCCTGGAAGACTTTTAAGCTTCTagtaagcattcaataaatactgATTAAAAGGACAAATGAATAAgtgaaaattaacaaataaaattaatgaacaaGTGGGTACAAATGAT-------GCAATGATGTGATTAATGCTAGAG-GTCTGTCGAGGGAATTGGGCATATAACTGAATCCAGAAATACCAGAA----------------TGCCACTGACAGTTATCCCAGCGAATCTCTCACTTTGACTCTCTattctata--atttaaatattcatgacatacatacattattttcataattaaaatgacCTATGCTCTATCACAAAA-----AGGTATATTTCATCAAATAGGAAGTTGAGTGCTCATTTTTACTGCTATGAAGCCAAAATGAGAGGATATCAGCTGCCCAAAATGTAGAGCACTGAACAGAATCAAAACTGACAGAGA-TGGAAATGATCGCTCAGAGAGGCTTAAGTGGG

a score=55410
s chr3           143709982 3890 + 160039680 [encoded data, 4676 characters]
s HiC_scaffold_1 129906330 4344 + 233722169 [encoded data, 4676 characters]

a score=174222
s chr3           143716631 7642 + 160039680 [encoded data, 8171 characters]
s HiC_scaffold_1 129911570 7304 + 233722169 [encoded data, 8171 characters]

a score=160441
s chr3           143727195 7944 + 160039680 [encoded data, 8461 characters]
s HiC_scaffold_1 129920682 7412 + 233722169 [encoded data, 8461 characters]

a score=112363
s chr3           143736329 3388 + 160039680 CGGGGAGTGTGACATAGTGGCATGCCCAGCCTTCCTGCT-------GGTAAGGTTAGCTGCAAAGTATTGCACTCC-------CCTCTTCCCACTTCACGCCCAGTTCTACATCTCTTAGAGACCAAAGCAAGCTCAGCCTGCTTGTTGTACACTATTGAGACAGGTTCCCATTCCT-CAGAAAAGACATTG---ATCTTGATGGAAGATGCTGCTGCAGTTTGAGCTGAA-ACCTAGTAGGCTTACCAAGGAATAATAGAGGCAGAGAATGAAAGACTCCGTTTGAAGCAACTCAGTTCGGCCACCTGCTAAGAG---AAGGAACTTGCTCTGAATGTACGACTGTGTTACCTTTAACTTCCTTTCATGAGAGGAACCAACCTGTAACACAGAAAATACTCAGGACTCTCAGAGATTATCCAAAGTGAGAGTCATGTGATTTAAGTTGTTTACCTTCAGAAATAATGAGCTGATTCATAACAACAGAGAAATAACCACACTTCCATGGGACCGGCCAAGAAAGCCTGGCTATTATCCAAATTTGAGTAAATCACACCACAAACACATGTTAATTTTGGCCAACCCTTATTACTTTGCTGAATATTTATTCCTAGTTGTCTAAGCTACTCGTGTTCACTTTGCTCCAGATCTTCAAAATGCTGTGGACAGGGGGCGGTTTG-------CAAACT---TCTGATCAGGC---------CCCTGGCTTTGAACTCTGCCA--------------------GCTGCAAGCAAAATCCTGCTTGGAAGACCTGAAGGATACATCCTCACCTAGACTTCAGATTTCTCTCCCTTTGTATTCCTGTTGCTCCCTGTGGCTGATGGGGTGTGGGGGTGAGGGGTGAGTGCTAAGAACAAGGGTTTTGCCCTGTCCTCTAGATGCACGTGGTCTGAGGGGAACTGTTACACTATTCCATTTCTTCACATGGATCTCTTGATTGCTACATACATGGGGAACTT-----AGACTAGATGGATGA---CAGTTGGGTACATGAGATCTATACTCAATCC--GATCTCTGGACATGTGAAGGTTTT-------CAGTGATGCCTAATGTGTACCTTCAGTATCTGTTTGCCA-ATGCATGGCATTGCCATCCTACGTGTTTT-----TTTCCTCTTGTTCTCTTTTTCATCTC--ACAC----CTTATTTCTTCAACTATAATGTAGACTACCTGAGGAAAGAGAATATAATATATAATAATACATCCTGAACAACACGTCTTGACTGCTGACCACATTGCAT-TGCTACCAGATGCATGTCAGCTAACTAATGCGATGATAAATTCTTA------CAAGCAAGGCAACAGGAAAAGGGTTGGCTGTGCCAAATCAACCAGGAGTGGAGGTGTGGCAAGGTGGGAAAGACTGGAGTGAAGACACAGATTCATTGGTACTTTTTTAAAATAAAATATACATTTTCAATGTACTAATAATATAATGGCTCTATGATTTAATTGGTAGGTAGAAGCCAAGAATAGacctcactaactcacactaatgagaggtaggcccattgcagtccaactgaggt--ctttcagtaattgattttttttttttatttttaaaatatgtgcttgcctctctccagccaacatacacatacaagttgactgccatacagaatacactttgttctttcattttgtcgggcgtagttgtgttttaattatttatgataatacttaatagtatattagtaagtgtcctgtagagtggcatgtaaaagtaatgaagtcttagtaacatgagaccacgacaaagctcacagctattaaatctctgcccagaagtgaagcgagactgtggggttctttgtgagcaccgagggcttgcagattagggaagtgaaaagcagcaac-cttctctgACTTACATTTATTAAGTATATACTGATATTTTAAAACTTATTGAATATGACTAATGGATTTGAATATGACCAACACGCTAAGATACATGTTTCCTCTCTGAGTGCTGTTTAGGAGGTATTAAGACTTCTCTAAAACTGGCTCAGCTGGCTTTCTACTTGATACCATTGTGCTGTACACTTTAC-TTTTATTTCTAACACTCACAAAACCACATTCTATCTCCAGAATATTAAGGATAATTAGAGCCTGTGAAGa---tttttaaattttaaattaatCTCTTGTACAGTCATGGCTGGAATTATAATCATTTCCTGAGGAAAAATAAGATTAATGTTTTAAAAGTTATGT-AAGACTTGACTTTACATATTTTTTTGCTATTGGTATATTTTACATACATTTATTTTTACTTAAATATTCTGTTACGTCCAACTTTCCAATTCCAAATTCCAGAAATAAATTTTACAAGATCCAGTTGAATAAAT-TCTGCCAAAAACCTCTACCAAATACTCCCTCT-GACACC-CTCTCCCTACAAGACAGTCCCCTCC-------TGGCAAGAACTTTGTTCTGCTCTGACCTTTTAA-AATGTTTGCCCAGTGCCTTTGTCTAGGTAATTGAAGATGTCGCCCAGTCCTTGTCAGCCTTGCTGGATAGACGGTGTCTTCCCA--CTCTAAACTGCTCCTTCAGCATCTCCTTCCAGTTTTCTCCTTATTCCCTTGCTTTCTCACAACTCATCCCACATCCTCTTGGAAAAAAAATGCACATTGGCACCAGGCTCTTTTTCTAATCAGCTCTGTTCCCTCTCCTGCTAATTTTACAGA----GTTTATTTTCTC-------ACCTTGTACTCTACTCATAGAAAACTGAAG-AGTGTTTGGTCCTATTACTAAAATATTGAGAATATGTGTGTTTCGAGACTGTACATTTAAAATGGCCATTTTTTAAATTATGGAGTTCTTATCACTACTTCAGTTTCACTAACAAAAGAATGGAAATTAAGCATGCGAATCAGAACAA-------------------------CAGTGGGAAC---AATAATAAAAGTCCAGAAAGGATGTCTTATCTCCATTATTGTGACTAACACTTGGTACAACCTCAC----AAATATCAAAACGATTAGCTTAGCTGAATATTTTTATGGGCGCCAGTCTTTTATAGAAACATACTGTTTAC------AAAAACTTAATCAT-TTTATTTAATCATCCGGTCATCTGAATTAAAATAGTCATCTTATTAAAATAGTTGATTGTGACTCGTGTACTTAGAAG---------AAGTATCCACGGGATACTGATTA------------------AAGACCACAGCTAGAACAAAC--TTGG--AATACCACATACATAGCTTTTCCAAGAG--------GAACTCAATCTGG----AGCCTATGTCGATGGA----GAATCTATACAAACTACAGTTGGAAAATCTCTTGGAAGTATTTGACCTTTACTGTG--------------ATAT---------ATTCAAAAACTGGTCATTTGCAGGGAGAGCTACTTGCCAGAAAGAAATAGAGTGGAGTTTAGATTTATGG--CCAGATCACTCAAAACA--GGGATTTGATGATCATGTTCAATTCCTAGGTAGATCTCTAGTCTACAAACTTAGGCTTAAG-AGACAAGCAAC
s HiC_scaffold_1 129928287 3514 + 233722169 CAAGGAGAGCGGGGTGGTGAGGGACCCACTGTTCCTGCCTTGCTCAGCTGGAGGTAGCTGCAGCCCACAACCTTCCTGCTACCCCTCATGGCACTCCCAGTCCAGATCCACCTCCCCCAGAGACCAGAGCAACCCTGGATT--TTCTCACACACTGATTGGATAGATTCATATTCCTACAGAAAGGCCACGACAAATCACTATTAA----GCTGAAGCAATCTGGACTACACACCTAGCAAGACTGGCAACTaataatagaaatagaaaacaaaatgctcCATTTGGAATA--TCAGCACAACCACCTGCTTAGAGGGTAAGGTAAAGATTTCTAATATATTTCAGTATTGCCTTGAACTTGTTTTCATGTCTCTACCTAACCTCTCACACAGCAAATAATCTAGACTAAGAAAGATTGTC-AAAATGAGAGCAATGTAATTTAAGTTGTTTACCTTCAGAAATAATGAGCTGATTCATAACAACAGAGCAATAACCACACTTCCGTGCTACTGGCCAAGAAAACATGGCTATTACCCAAATTTGAGTAAATCACACCACAAACACATGTTAATTTTGGCCACCCCTCCTTACTTAACTAAATGTTTATTTCAAATTATCTGAGCTCCCTGTGCTCGCTTTCACTCTGCTCTTCCACACACTGTAGACATAGGGCTTTTTTTCTCCCCCAAAATAACTCAGATCTGCCTGTGCCATTCCAAGAGTTGCAACGATGTCACTGTTTCCTACTTCTCTTGGGCTGAAGGTGAGACTC----TGGCAGAGCTGTGGGCCTCAACCCTACAGAGCCTCCAGCCCCTTGTCACT-----GTCCCACCGCTTTC--------------TGTGTGGAAGAAAGACTGGTGCTAAGAACTAGATTCAGTCCCTGTCCCCAAGATGGATGTGAGCTGGTGAGAAATGCTACATGA--------CATCACACGGATTCCATGACATCTACATCCATGGACAACTTTTGACAGAGTAGATGTAGGAATCCAGCATAGCTCATGTGACTGATATTTAATCCAGGGTCATAGAATTTAGGAAGTTTTTCTGGATGCAATGTCATGTAAAATGTCACTTCAGGA-CTGAAGATCATATGATCTAAACTGTAATTATTCATGTTTTGCATGTTACAcatcaatcttttttttccctccaacaCTAAACTCGTTTCTCAAATTATACTGTAAATCCATTGAAG--AGAGGCTATTacttacatttatatatttggaaCATTGTTCCTATGGTGCTGACCATGTGGTATGCACTTCCAAAGAGACAGTGACCAATGAATAGGGCAGCAAATCCAGACCTCAGCAAGGGAGGGAGGATAATCAGTGCCAGATACACCAGCTCAGTGAGGAATGAAATCAAGGTTATGTGGAAGAGGCTGGCACAGAGACAAAGCTCTACTGgtccttattttttgt------ttcagttt-aacATGGTAATGATATAATAGCTTTATGATTTAATTGGCAGGTAGGAGCCAGAAAGAGATCCCACTGACTTACACAAATGAGAGGTAGGCCCATTGCAGTCCGACAAAGGTTGCTCTTAGtaattga------ttttctattttcaaaatgagTGTTTGGCTCACACCATCCAACATACAC--ACAAGTTAACTGCAACACAGAATAcgctttgttctttcattttgtcaggCATAgttgcattttaattatttatgataATACTTAATAGTATATTAGTAAGTGTCCTGTAGTGTGGCATGTAAAAGTAATGAAgtcttagtaatatgagatcACGATAGAGCTCTCAGCTATTAAATCTTTGCTGAGAAGTGAAGTAAGACTGCGGGGTTCTTTGTGAGCATTCGGGGATTGCAGATTAAGGAGGTGAAAATTAGCAAAGTTTTTCAGTATTACATTTATGAAGTATatggtgatatttttaaatacattgaaTATGACTAATATGTTTGACTATGACAAATATGTTAAGATCTATA-TTCTTTTATGAGTGCTGCTTAGTAGATATTAAAACTGCTGAGAGAAAGCCTCCGCTGATTTTGTACTTTACGGCACTCTTTTCTATActtcactttttatttctgaCTTCTACAAAA-CATACTCTATCTCCAGATTATTAAGAATAATATGAGCatgtgaaagttttttttaaattttaaattaatctcTCTTATGGTTATGGATGGAATTATAATCATTTCCTGAGGAAAAATAAgattaatgttttaaaagttatataaagACTTAACTTCATA----TTTTTGCTAGtggaatattttacata---ttttttttacttaaatattttgttacagcCAACTTTCCAATtctaaattccagaaataaattttacaagATCCAATTGAATGAATGTCTGCCTGAGA-CGCCACCAAAGCCTACCTCCAAACACAGCCCCCTCCGCCAGAGAGGACCCTCTGTGTCTGCAGCAtggtctttgttcttttccacCATTTTAGCAGTGTTTGCCCAGTGCCTTTGTCTGAGTAATTGAAAATACTTCCCAGCCCTTTCTGGCCTTTCTTTGCAAGCCATGTCTTTCCCTTCTTTGAGTAGCTCCTTCCTCGCTTCCTTCCAATTTTCTCCTCATCCCTCTGCTCTCCCACAACTCATCCTTTATCCTCTT-----AAAAACCTTTGTTGGCACCATTTCTTTATACTAATCAGTTCTTTTCTCTCATTCACTAGGTCTATGGGttccatttattttctctgtccttcccTCATACTACTCTGACAGAAGACTGAAATAACATTTTGCCTAGTTACTAAAACATTGAGAATATCTGCACTTTGAGGTTGTAC-----AAGtagccaattttt--atttttgagttccCATAGGTACTTCAAATTCATtgataaaagaacagaaattgaATACACATATAAGAACAATCACAGAAAGAATGGTCTATTACATTAGTGCAAACATAAACACTAAGAG---AGAAAGGTGGCCCTATCTCTATCTTCATAATTAATAGTTAAAGCAAGCTtgcaaataaatatcaaaatttttGACCTGGGT---TATTGTTTTGGCCACCAACATACTATGAAATTGTTttgtctataaaatgaaaaacatatgcatatatatttaatcat----tcatagctattaaaatatgtatttctctaA------TAATTGACACTAAACTATTTAGAAACTTGATAATAGGAATTAATAG--CACTGCTCATGAACACAAATGCTATGCAAGAACACAGCAAGAACAAACAACTAGAAAATATTACACAC-CAGCTTTCCCCAGAGAAGGCCTTGGGCCCAGTTTGGTAATAGCACATATCAATATATTTGGAAAACATGAAGAGTAT--TTGGGAAGTTTCTTCAAGAGGTTTGATCATGGTTGTACAGCCTTCCTCCTTGTATCAACCTTTGGTTCCAAG--TGCTTATTTCCAAGGAGATATACCAGGGAGAATAAAGTAGAGCAGATTTCAGAGTTGTGGCTCCAAAATA-TCaagacattagaaaaaaaaaatcatg--------------agttcTTAAATCTAGGAACTTGGGCACATGAAGGAAAGCAAC

a score=111918
s chr3           143741744 6204 + 160039680 [encoded data, 6668 characters]
s HiC_scaffold_1 129934520 5844 + 233722169 [encoded data, 6668 characters]

a score=103085
s chr3           143748944 3638 + 160039680 TTTCATGCTACATCAAGGCCTGTTGTAACAGCTTTGGCAAACAATCAGCGTGGCCTAAGCTGAGTGTGTGGTCGTGAAACTTGAGAGGCAGAGAGAGAGATTAATCTGGAAGATTCTAGATACCAAT------GCATCCATTCAAAAACAGCATTCGAAATATATAATAACCAGTTTGGCT-TCTCACTGACCACCAAAGAGGGTGACA---AGCAC----AGACCAGCACTCCAGACAGAACACTAGGAGTGTTCGCTTCCATGCTAGTGTTTGAAGTGTTTGAATTCACAAG---TTCAAATTAATAGAAATTCTTG------------AGCATCGGTGTGACAGGAG--------GAGCAGTGTAGGTAAGCTATAGA----------TCT-----------------------AAATGAATT---GGTAACTGTAATGGCTGTGGTTTCACAACCTAATGGGAGGA---GGGTCTGAGAGCATGTCATG--------AGTGCCTGTGTCGCACGCAGAGGTCGGATGCCTGC-TCCCTAGTCACACAAA-CCATACGTTGCATGGGCCACTCACCCATAAGGATGTCTCTCCAAAGGACA-GAATCAAAA----CTGTGAACAGTTCATGAAACCAAAAACGTCATTGTTAAGTTGACGATAAGCCTGCTCACTGTTCATTCTGATACAGCCCAGGAATGCCCCGTAGGGCATGCTTTAATGTGTTACAATAATCCATCTTTCAAATTGAAAGGTTAATTTTGGTAAAAAGTAAAAAAAAAAAGAAAAAAAAGTATCACATACTTATTGCATTTGA-------AATGGTAAGATGGCAGGTCATTTTGAGGCAATAAAACTTTTCTCTT-TTAAGTCTCTAACTTTGAAAAATGTATCAGTAGTACAGGAAACAGCTAGCTAACAAGAATAATGCTACTATCCTCTTTAGATTTCCAAAGTACTAAAGGACACTTTTAACATTAGTTAATTTACATTTGTTGGAATTCTAG----TTTATTTTGCCTCTGAGTTAAGTCATGGCTATTTTTAGCCAT--CTGTT-CTGCTACAGATAGATACAAAATAATGCTTGTTTATTGAC---GAGCAGAGAGGAACCTAAAAACTTAATG-CAATATATTTTGTAGGTGTTTGCAGATCCCAAGAGGAAACAGGAATATTGTTTATGATTTTGTT----CTTACCTA-ATTCTCCTGTACTAACACATTTTCCCTTCCCTTATGTGCTAATCCGTTTTACAGTATCT-GCTCCCCTTTGTTCCTCATAAAGAGGGGTGGAAGGCAGAGTCCAGCTTGGTTAGACATGCTCTGACAGAGAGCTCT--AGCAACATGGAAAGGTGCAAACCTGTTCAGGATTTCACCT---AAGAAATGACAGAGTAATTACAGGACAAAGTGTCCTTCATGAGTAAAAACAACCAGGCTGAAGTGCTTTCAAGGCTAGTGTGGCCTATTTCTCTCTTGGCACGCTGCATAAATCATCTACCGTGGAGGGGTTGTTCTCTCACCACATGGCACACATGCATGAATGCATGCACCAGGGAGAGAACATGGGAGCCTACTTACAACCACGGTGTGGGTTAGTGGGCTCAGGGTCAGCATTGTGGAAATCC-------------------CACTTTACTGCCACCAACCCCCCGCCCCCAGTCATGAAACCTCAGGC-ACAGGAaggggaaatttaatccatatatgtctgcctcattttcatttaaatcatggaggaaaaaagttgtttt--aagagttctttgatgtcctagactcccttaagccttttcttagcctatatacttaaaaacaggaattagcattttcccaggtatggaggaaTAACCTATGCTCTCCCCTCCCTCCTACTCCACACCCTCCCTCCACAGTCCGTACCCCAGTTCTC-----AACAG-----------CAGGGAAAAATGATGGAATGCTAGGAGACAAAAGAGCTTACCTGAGGATCAA-ACACACTGAC-AATATGAATTCCTTATGTAGGGCCCACAGCGAGGCTGAATCATCAACATTTCTGGTCTCTCAGGACCTCATCCTGCCTTGAGGACCTGCCCAGGAACAGGCTGATCTCCC--ACACTTGACTACTGTCTGAGTTCTGTAGGAGTCCAACA--TGGATCTTAATGCAAGCAGCT-TTTCTGCCCTATCATATTTTTGATAGCCCTACAGTCGTGCCCATGTTGAAACCCATATTTTTGACCCTCTGGGGGGTACTTTACTTCTTTGCTTTGTGTCTAATGCGTATCATTTCATTCTGGCTCTCACATTCAGGACAGAGCTTCTTAATCATTTTTAGATACACAAGAGTAGGCATATTCCGTCTCCCTGTGCACAGTATTATCCAAAGAGTAATCTGTGTTTGGCTAAAACTCAAGGATTCCCACAGTGAAGCCCTCACACTTTAATCAATGGAGAAATCTGAGGGAATTGTTTAGAAGAAACAATTCAGTCAGAGAAAGAGAAAATATTATAGGTCCTTGGTCCAGAATTCTTACTTTTGGGGGAAAATTTTTAAAAATAAGACAGCCATGATATGAACACATGTTGTCTCTC-TTTCTCTAACACAACTAGAGTGCCATAGTCCCT-TTAAATACAATTAATATCAGGAAGAGTGACTGTCGTGACA-----TTCTATGGAGTACTGTGAAGAAATCTAT--TCATCCCATGTCATGTAACAAGCCACTTTGGAATTTAGAAATAAGATTCCATTTCTCATGGATTCTTTCATGTGAGCTGATTCCACACTGGTTTGAAA-TGCAAGGTTAAT--TTTATCAGCCTTCAGAAATTTCATGCTGGCTATCAATGGACTTCATGGTGGGAAGAACATAACAGTGCCTCTTAGGTTCTCATTGCT----GCCATGGCCTCTGCTCCATCTCCACGAATACTGGGTCTGAGCCG-AGAAGTCCCATTGCTTTCTCAATGGCCTGCAC--GTACATCTCTGTGCCTTTGTGTA-ACCCATGCCTGTCGTAGGA----CCAGTCTTCTTTCTTGTCTGATAGATTATCCCATCAGTCTTTGAGGGCTATCTGGAAAGAGT-CCTCGGTGTATTGTCTCCCTAAAGTCTATGGGGCAGGGGTTTGGTGTTTTGTTCCCTTA-------GCTTCCCCTAGGGC--AACATACTTTTAGAGAGGGAT-GTCACATACTGTTCCTATATT-CCAG-GCCTGGCTCAGGAAGTCTGTGGCAGAATGATGCTCCAGGAAAGATACACTACATACAACACCTACTTCTCCCTATAAGATAGGAGCTTCAAATGCTGCCAGGACAAAG--AATTAG---------CTGGTCTTAAGCCTTACTGTTGTGACAGATGCTGATGGAAAAGTGGGTGGGTAGGAGATTGAACTG----ATATCTGGgatggatagatggatggatgggtagatagatg-aagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatGTAAGCATAAATGGGATTAATACATGATTATATTCTGAAAATCTTAACATTCAAACTAACGTAATAAATTCATCAATACTTAGTAAACCCT-----GTG----------AAGGGCAACAAAAGCTATACAAA-----------------------ATGAGTTTCGGGTCAGTTGGTGAGTTAGTGTTGACTAGGGAAGATAAACAGAAATTCCAGAGAAACACAAGCATGTGCATCGTAGAGATACTCTTTGAAGCAGAAATAGTAGATGTTGTTATCAAAGCAAAGTAAGGAAGGCTACAGGCTGTTTAAAGTAACTCTAAAAATGCTCTAAAAAA
s HiC_scaffold_1 129944988 3683 + 233722169 TCTCATTCCACACCATGGCTTATTGCAAAA--TTTCACAA-----------GGCCTAAGCTTAGTCAGTGATAGTG----TTAATGGACAGAGAG------TAACCTGGGAAATTCAGGATGGTAATCACTATGTTTCCACTCAAAGATAAGGATCAAAACATGCAACGGCCGCTTTGGTAAGAGTATTGACCAACAAAGATGATGCCACCAAGCATCAGAAAGACGCCAATATAAATAAAGCAATCTGAGAATTGACTTCCAT--TAACG----GAGCTCTTCTGTTAACAGAGCTTTCTGAGCAATAGCAAGGAGAGTAGGGGACAAGTAGCAGAGCTGTCACTAAAGTGTACTTGGCAGAGAGCAGGTAGCTGATAGAATAGCTAATGTCTGCACTGGTGTGGGCTAGGtcaaaaaatgaatcaaaggtaACTGTGATGGA---GGTTTAAATCTCTAATGAGGAAATCCGGCCTTGAGTAC---TCACAGGAAAGAAAGTGCCTATATCACCCACAGAGATTAGACTTCTGCCTCCTTAGTCATACAAAGCCACACAGTATACAAACATTTAACCTATTGATCTGTCTTTCTTGGGGGCTTGAAGCAAAAAAGACTTAGAA---TTCATGAAATTATAA-CATCTTTCTTAAATTGATGATGAACCCACTAAATGTTCATTCTGACTTGGCCCAGAAATGCCCTGTA------------ACATTTCACAATACTAGACCTTGGAAACCGAAAGATTAATTTTGGtgtgggagaaaaaaaagcaga----------ttgcATTCCTATTGcatttgatatttgaaatggtgaAATTTCTGATTATTTTGAAGCTCTAAAATTTCTCTGTCCTTAATTCACTCACCTTGGAAGATTTATCAGTGGTGCTGAGAACAACTAGCCT----GATCAATGCCAGTATCTCCTTTAGAATCCCTGAGTATCAAAACACAGCTTTAACATT--------TACATTAGTTAGAGTcctatgtttttcattttgcctCTGAGTTAAACATTAGCTCTTTTTACCCTCTCCTATTATTATCACATATAGATAGAAAATTATACTTGTTTGTTGACAGAGAAAAACGGGGGAAAAAAGCACTTAATGACAAAGAATTTTGTAGTTGTTTCGTGACCCAAAGAGGAAACATGAATGTTGCTTGCAATTTTTCTGTACCTTATCTACATTCTCCCTGact--catattttttcttctag-atgctttaacacattttaaaatgcccAGGTCCTCTTTGTTCCTCATAAACAAATGCAGACTGGGGATTCCAACTTACTTCAACATGCTCAGACAAGAACATTTGCAGCAATGTGGAA-GGCACAAACCTGTTCAGGATTTCACCTTTTAAGAAATGACAGAGTAATTACAGGACAACATGTCCTTCATGAGTAAAAACAGCCAAACTGAAGTGCTTTCAAGGCTGGTGTGGCCTACTTCTTTCCTGGCAAGCTGCATAAATCATCGAGCAAGGAGGGACAGGCTCCTGGCCACATGGCAcatgtgcgtatgtgtgtgcaCCGCTGCACCCCCGGTGAAGCACAC--ACGGACACCTCATGGGTTAAGGCACTCAGTGTCAGGTTAGTTAAAACGCTGATAATAAACCCCCGGTGCATTTTACCACCATC--TCTCTCCCCCTTAATCTTTAAACCTCAGGCTGCTTGAAGGGGAAATTTAATCCATATATGTCTGcctcattttcatttaaatcgt-----caaaaagttgttttaaaagaGTTCTTTGATGTCCCAGACTCCCTTGAGCTTTTTCGTAGCCTATTTTCTAAAAAACAGGAATTAGCATTTTCCCAGGTGTAGAGGAGAGCAGTCTG------CCTCCCTCCCAAACACAACCCTACCAC------TCTCACCCCAGGTCTCCCCTGAACAGGGAAGAAAAGtcaggagaaaaggaggaagtacTGTGAGAGAAAACAGCTTATCTAATGATCAACAAGCGTTTACAAATATGAACTCTTCATGTGGTG-CCAAGCTGAGGCT-AATAATTAACATTTCTGCTCTCTCAAGAGCTCATTGTGCCCCCAGGGTGTGCCCGGGGGCATACCTGTTTCCCCAACTCTTCACTGGTGCCTGAATTCTGGAGAATTCGGAGATGTGGATCTACATGCAAACAGCTCTTCCTGCCTTATCATATTTTTGATAGACCTACACATATGCCTATGTTGAAACCCATATTTTTTGCCCGCCGGGTGGTACTTTACTTCTTTGCTTTGTGCCTAATGTGTATCATTTCATTCTGGCTTTCACATTCGGGACAGAActtcttaataatttttagatACACAAAAGTAGGCATATTCCATCTCACTGTGCACAGTATTATCCAAAGAGTAATCTGTGTTTGGCTAAGACTC-AGGATTCCTACAGTGAAGTCCTAAC---TTAATCAATGGAGAAATCTCAGAAAATTGTTTAGAAGAAAT-GTACGGTTTGAGAAAGAGTAAA---TGTAGTTCCTTGGGCTagaattctgaatttttttccaaaaactt--aAAACAAGGGAGTTATGTTGTAGgcatgctttctttctcttttcttcaacaTTATTTCAGTATCACATTTCAGATTAAATACAATTAATATTAGAAGGGATGAATCT-GAGATAGTGGTTTCTATGAATCATTCTGAAGAAATCCACAGTCATTATGTATCAAATGACAAATTATTTTGGAATCTAGAAATAAGATTCCAGTGATAGTGGCTCAGACCA-GTGAGGTGTTTCTCTATCACTTTTAAAGTATTGGAGTGATCATATATCACCTTTTTAAAACCT-ATGGTGGCTGCTCATTGCTTTCAGGCTATAGAG---TCAGTGAAGTTCTTTAGGCTCTCATTGTTACTAGTCAGGGCCACTGCCCCACCTCCAGGACTCCTGCATCAGAGTCACAGAACTTTCTGTTCT---TCATTGGCATGTGCCTGCACATTTTCATGCCTTGGCTCACACCAATTCCTCTTGTAGAAATGCTTCCTCATTTTCTATGCCTGTTGAATTAGTCTCTCATTCTTTAAGACTTACCTCAAAAAAATATCCCACTGTGTAGTTTCTCTTGCCTCCTATAAGCAAGGTTATTATGGTTTGTTTCCTTACCCTTTGGTTTTCTCCATGACTGTGCAAGCTCTTGGAAGGGACTCAGCATGTAGTGTAATTGTGTTGCCAGCACCCGGCATAGTAAGTACCTGGCTGAGTTCTATTCTGAGGATAGTGCTTTGCATGCATCACCCACCCCCACCTAC-AGACATACGCTTCAGATACTGCCAAGGGGAAGCCCATCAGGCTACCTTCCAGGTCCTCCACCCCACTT------CATATGCT---------------------GGGCTTCCACAGCACCATATGTAAGAT---------------TTTCTAGATATTTGTAAAAGGAATGCCTAGATCGACagatagatgggtggatggatggatggatggatggatggatggatggatg--------agtaggG------------------CCCAAAATCTTAGAATTCAAACAAATCAAATAAATctacaaatatttgtaaaatcCTTAACAGTGTCTAGGCACTAAGTCAAATGAGAGCTGTAAGAACCCAGATATTTTAATGTCCACCTAAGAGTTTTAGATCA----GTGAATCAAGACTTAtatgaaaaaagaagaggaaac-------aaatgACAGTATAAGA--CCTACAGGTGACCTTTGAAGCGGGAGGAGTGGGTA-TACTACCAAATTGAAATCAGGAGGGCTGGTGGGCTTTTAGAT----------AATGccttaaagaa

a score=140240
s chr3           143752966 5919 + 160039680 [encoded data, 6170 characters]
s HiC_scaffold_1 129949461 5513 + 233722169 [encoded data, 6170 characters]

a score=59699
s chr3           143759253 1795 + 160039680 cTGAAATTCTGGCTTCAGGAGACTATTTAGTCCTTGGAGACAAGGGCTTTGGTCTGATGCCATGGACCACGGTAAGGATAGATGTTAATAAAGCAAA-AGCCATGAGGTTGTTTTAAGAAACATGTTGCTTGCAAATTAAAGTTGTGTGCCACCTTTCTTTTTTTCAAAGAAGTAGCTAGAGTTATAGAGGCAGTCAGGC-TGTCTGGATGTGTGTTAAGCTGGGCAGTGAGGGCGCCTTATAGATGAAGCTGCTGAGGCCCTTGTTTGCACAGCAAAGACTTGGGAGATAAGGGGGAAAAAAGCACTGAG-CTGCAGGCTCCAGCTTTGAACTGTGCAGATGGGAGATGTGTAGAGAATGTTACAAGCCCCCTGCTTTGACACAGATAAGAGAAACAGAGAGAAGATAGAGCCTTGGGTCAGAGGGCTGAGTGGTTGGAGAAAGGCAACACTCATGCATTTCAACCAGCCATGCTCCCAGCCACCAGGATGCAGGAAGAGGG---AGCTAGCAGAATGTCGGCAGGAAGAACTGCCATTTCCAAGATAGGAAGGCA--TATCCAAAAGTATAGAAA----CACACACACAGGCAATCAATTGGCTTCCTAAGAGAATCATTCTTGCCAGGGAGAACTCACAGCCAGAACACAGCAATGAGCTATGAATTTTCTCT----GATACTTGGTCTCCAACTCCAGGCTGAGACCTAAAAAACTTGTAAGTCCAG-GTTGCCCAGTTGACCTGTTGGTTCTTAATAAAATTTGATGGCAGGGAAACTAAATTGCTAATGCCCCAGCAATTGACCTGGCGTTGACTCCACTCCATCAAATTCTATAAAAAGATCAGTGTCCCCAGAATCACACACATTTCCTGGTCAATCTGAGGGACAAGGTGTGCTGGTAGTCGGTGTCAATTTGGGCAAGCTGATGCATTG-GGGAGATATCAACCCTGCAAGGCTGAAGTTTGTCTCGTTTGGGTTCAAGCATGATAACAGAGCTATGAGTAAATTTTTAAACTAGCCGTTAAAGATGCCTTTCCTATCAGAAATTTCAAGGGCAACAACAGCTGGACTAAAAGAAGAGGTAAAGGTAAGATTTATTTAAAAAAAAACAGAAATTGCATATTTTGAATGAAAAATAAAAGACATGCAACTTCTTTCAGGGTGTTTTGAGAATAAAGCAGTGCGCTTTTCTAGATGGGCTGGTATCGAGGGGACTGATAAGCTGACCTGCCACAAGAATCTAACTTTGTTTCTTTACTTGTGAAGGGAGGAAATGAATGAAGGTACCAAGTGTAGAACTCACAGTGAGCTTTCAAGTGCAGATCTCGACACTTTTATCCTGAAATTTAGGAAAGATAACTTTTAATTACAGTAAGAAGAACCACAAAAGCAATGATTGATGTGAACCTGGTGTGTCCTGATTCTTTATTAATCTTCTTAATTAGAAGCAAACG----TGCTTTATCTGCCAGGAAGGAGAGGAGCTGGGTGGTAATGTCCTGCCTTTGCCTCACTATGGGACTATGGAGCCTGATTGCTCAGAGAGCGGCATGTCTAACTGATGTCATAAGCTAAAGAGACCTAAGTGTCTAGCACTTGTTTTCAGCAGGGAAAGACATCTTGTGTACATCTTGCAGCCAGTCGTGTGCTT-------------------------------------------AAACAGCCCTGCTAGAAGGAGGAAATCCTGGAGGAAGTTTAAATTCCTACAATACCAGTATTGAGAGCCCATGCCTACCATGGAAATAAAGTATGGTAATAGAAAATGGCAGGTGTTAAGGAAGATAGAAAAGAAGCCAGGGCATGATGGAAGAAGGT
s HiC_scaffold_1 129954961 1739 + 233722169 CTGAATTTCTTGTTGGAACAGATCACACTGTCTTTGGAGACAAGGGGTTGGGTCCTTTGCTGTGGA----------GCTAGATGTCAATAAGCTAGAGAGGCAAATGGTT--TTTCAGAGGTAGATTGCCTGCAAGGTGGAAttatatgca--------tttttttaaagaagtaa--gaAGCTA------CAGTCAGCCCTGTCTCAAAGTGTGTTAAGTTGGGCTGTGAGGCGGCCATGTAGATGAAGCTGCTGAGGTCCTTGTTTGCACAGGAAAGCCTTGATAGATAAG----AAAAAAACACTGAGGCTGCAGGCTTCTGCTTTGAACTGTGCAGATGTGAGATGTGCAAAGAATGTTACAAGCCCCCTGCTTTGACACAGataagagaaacagagagaagataGGGCCTTGGGTCAGAGGGCTGAAAGCTTGGAGAAAGGCAATGCGCATGCATTTCAACCAGCAAGGTTTCCAGC-ACAAGGATGTGGCAAGAGAGTAGGACAGGAAGAATACC---AGTAAAAACTGTAGTTTCAAAGAAGCGCAAACAGATATCAACTGGTACAAAAATTTCCAGTAACCCTGAGAACCAACTGACCTCCTAGGAAACTTATTCCTGCC-TGGAGATCACAGAAGCAGAGGGAGAATGTGAGCTATGAATTTTCTGTACAGGTTTCTATGTCTCCAGCC-------------------------ATTTCCAGTGGTACCCATTTGACCTGTCCATTCTTAATAAATTTTGATTGTGGTAAAATTAAATTGCCAACTCTCTAGAAACTGACCCAGGGTTGACTCCTCTCCTTCGGATTGCAATAACGGATTAGTGTCCCCAGAATATTTTGTGATTCCAGGTAAGTCCAGGGGCCAAAGTGTATTGGAGTCTTGCATCAGTTTGGAAAAGTCAGTGAGTTATGGGAGATAAAAATTCTTGAAGCATTAGGTTTCTCTCATTCCAGCCCAAGCATGATGGTAGATCTGTTAGTAAATTTGTAG-CTTGTCATTAAAAACAACTTTCACCTAAGAATTTTCAAGGGCACTGACAgctgaacaaaaacaaaaggccaGCAGAGGAGTTGT-----AATACTAAGCAATCAtacagtttaaataaaaaa--------atcc--ctTCTTTCTGGGTGATTCAGCAATAAAGAAGTGCATTTTTGCTAATAGACTGCTATTAAGGGCACCTCTAAGCCTGTCTGCCATAAGAATATCACTCTGCCGTTCTTCTTGTTAAGAGGGAAAATGAA----GTTGGCAAACATAAAGCATACAATGTGTTTTCAATTGCACATCATGACACTTTCATCCCCAAATTTGGGGGAGATAACTTTTAATTACAGTAATAAGAACCACATGGGCAATGATCGATGTGAACCTGATGTGTCCta-----tta--aatctttttaattaGAAGCAAAGGGGAATGTTTTATCTGCTGGGGAGGAGAAGAGCTGGGTGGTGAGG------CTCAGCCTCACTGTAGGACTGC-AAACCTGACAGCTCACCAGAGTCCCTGT-TCACCCAGGCCGCAGGCGAGGGGCCCACAATGGTCTC-CAATGGCTTT---------------TCTTGTAT-CACCTTCCCgaagaactttttcctttttttctcctcttccttctccttctccttcttcttccttttggatTGGCAGTGTTAAAACTGGGAAATC-----AGGAATTGGAATGTTTGCCACACCAGCATTGCGAGTTCACATATGTAGTGAAAATAAAGCTCA--AGCCTGCAGTGGAAGCTCTGTAGGAAGGTAGAAAAGGAGCCAGGGCACGATGGGAGCATGT

a score=59469
s chr3           143761277 4477 + 160039680 [encoded data, 4963 characters]
s HiC_scaffold_1 129958234 4108 + 233722169 [encoded data, 4963 characters]

a score=47700
s chr3           143766012 2247 + 160039680 AGAATATAGTTTGCAT--AAAAGTTGGAAGAGTCACAC---ATAAGCCAATGGAGCTCCATCTTCTAATGATAACGATACACTAAAGAAGCACTTTGTCAATTTCCCTACATAGCAGCCAACTAGCCAAGTAATCACTACATCATTTCATAAGGCAACCAGTCTCTCAGATTTTT---GGGCCCTTAATCCTGCTTTTGTTTTTAGTTT----GAGACAAAAAAAAGAAAAAGGCATTTCTTTGACATATTCCTTT-----------ATCAAAAGACAAAACTGAAGTCTGTAT-TTTGAAAAAAAACTGGGAAGGAACTAGTTTT--AACGTATATCTAtccattttctgttgctata--------tttcaggctatgcaatgtaaaaaggagagagatacagtttgtttc-tagttctggtggctataaagtccatataccgtggcaccagtatctcctgggagaactctctggattcatcattacatg---gagctgaagaaagg------gaagtt---------ggaggtcacatggcaagaaaggaagcaagagagtagggctggatgaggctcactcttttataa----caagctgctctt-acaaaatctaatctacattcttatgagacagaacctatggtaagatgttagcattaattccttcacacggttcaatctctcaattgaaccgtttgatacctaggttccaacacatgggtcctggtgggacaaa--tcacatccaaac-acagc------TGGTAGACACTCTTCATCTCCGGCTTGCTTAATACTCACTCTTTACTTACGTTGCTCCTGTA----------------------------------------------------------------GGTTTTTAGTGTCATGATCTGAGTTTTCATTTTGTGTTCTCC-----------------ACCCCCTATCACCATCCCCTCCCTCTCAGATGCACTGTGGTCCTTCTAAGTGCTGCTACAGAAATGTGACCCCATGATTCCCAGAGGGCATGGGGTTTGGATCTACAAAGGAAGCTTTTGAGTTCACTCTCTGCTTGTATTCCCCTGCTGCTGTTTGCCAACTAAAATATTTTTGTCTACTTGCTGCATATTAAGGATGGAGACAGAAAGAAATAGTGGCATCTACCTGGGCAAGGTCTCTTGTGTCACGTAGGGAACTGTGACAAGGAGAGGATGTTCAATATGTGGCACAGTAGAGGCCAGGTCAGGGTCAAGTCTTGGAACACAGAATTCCAAGTT-TCTGAGATGGCAGGCTGAGCTCCTGGCCAAGATGTCAGAAAGTCATCAACACAAATTGGAGTCTCTGGAGAGCATCTTAAGGCGCTGTATTTTTAGAAGGGGGAAAAA-GTGGTCTTTAATACCGATGACTGAGTAAGAGTTCATCTTTATAGCCCATTATATTGATAGAAAGAGCATATAATGGCCCTTCATTAAAATCTAAAGTCTCCAATTATTTTATTATTGTTATTTAATATCTATTGAGTTCCAGATTTAATTTTACCCAATTGGTTCTATAGATACTAATG-CTTGGTTAGTGTAGAATTTAATTTAGGCTTCATTCTGATCttatatttttttaaaatctttttaaa-atGTTAGTTCCTTACCCTTTCCAAACA-GCACATAAGCACATATATAC-----------------TACAGTACCAGAGAGCCATAGAAA--TGGTACTATACTTGCTACACATT----ATTTTTTATATTCTCCTTGTCCCAGGACAAAGGAAAGACCTTCATGGAAGAAGTAAAAGATGTGTGGTTTTCCCCTATCCTCCTAACCTG------------------AGTCCCCTTCACAGCTACCTACTGCAAATGGAGAATTTTACCTGGAATTGGAATATTTTGTTCAAAAGTAAGTCAAATTTTGCACTTTAATTCCCTGGACCTCAACTCTAACTGACCAAGGGCTGAATCACACCTTTCAGGCAAAGGAA-----------AGCAACAAGCACATATTACAGCTCAGCCCAGCCACTGGCCATGGACTGCATAGAGCACACATCCTGCTGCAGGCGTCTGGTAAAAGTCAGCCTCAGCTCTATACTTTAGCTTCAGGGGCAG----CAAGTTTCTGCTTTCATACAGTAAAAATGTGAACAGCAT-----CATGATTACTTATAGCATAATCATGAGGACAGAC-------CAGGGCTTCT-TGAAACTAAAGTTGAATCCCAGACCCACTTTCTCATGGGACATCCAGGCTGTC-AGTAACGTGTTTCACTATTCACACAAATATGAGAAGTGCCCAAGGTATGTCTTAAGCATTTGTCCATATTACCAGGTCCCCATGAAGCTTCAAGTCTAGAAGTCTCTTGATGGTCCTACTCAGAAGT-GAGCTCACAATTCCTTCCCATCGTGGAGGCCCT
s HiC_scaffold_1 129963264 2356 + 233722169 aaaatatagtCAATATTTGAAAGTTGGACGATTTCTGCTTCATAAGCTAATGAATCCCTTTCTTCTCATAATAATGATACTTTCTAGAAGGACTTTGCCCCTTTCTAC-CATAGCA-CCAATCAGTCATTTGGTCGCTACTCCATTCCATAGAGTC-CCATACTCTAAGCCCTCTCGAGGATTCACTATCCTGTATATACTTTCAATTTTCTTAAGATGCAAATGAGTA---------TTTTGGACCTATTTCTCtgcaaaatacagagaaaaaggaaaggctaAGGCATatacattttcaagaaaaataggAATGAATAATTCTTTAAAGAAgcatctctctgtttcctgttgtTATAACAGAATCCTTAAAGCCGGCTGATGTATTACATacagagatttattttgttttataattctggTGCCTGGAAACTTCAACATGCATGGAACC-GTATTG---GAAAGGTCCTCCTCGATGCATCACAACATGACAGAGCAGCAGAAGGGAGCAGAGAAGTGCCTACAAAAAGCAGTCACATGGGAGGAGAGAATGCAAGAGTG---GGC---AAGAGGCAGACCTTGTTATGATGACCGAGTTACCTTCCACTAAGTATCACCT-----CTTATAATCCACCATCTAT---------------------------CACTG----------CCATTGCATC--TGGGAACCAAGCTTCCAACACATGGATATTTGAGGGGTGAAAGCCATACCTAAACCATAGCAGAAGGTGAcagtttttctatatttctggCTTACTTTGCTTGTATTCCTTACTTCCTTGGTTCCTATAACATGTGGCACAGCAGGCTATTTGTATCATTTAAAGCTCTAAAACTTTCACCATCACTGCTATCGATTTTTGACTTCATGGTCTGGGATTCAATTGTGTGTTTTTCCTATCTCAAGATTGCCAAACTCCTGCTATTGTTCTCGCCctcttaaatgtattttaatctgTTTGTGCGATTCT-CAGATGTATTTCAGTGCAGTTTATACAGG-CATGGTCTTTG-ACCCAAAGTGCATGTTTCCAATGTAAAGTTCCACTTGTATTCCTTTGCTG---TTCACTAACTAAAATCTTTTTGTCTACTTTATACATgttaaatgcaaaaaca-----aaagtgTGGCCTTCATTGAGATAAAATTTTCTGTTGCTCCCAG--AAATGTGGTCAGACAAG-----CCAACATGTGACACAACA-AGGCCAAATCAGGGTCGGATCTTataacacaaaaacagaatttctCTAAGATGGCAAG-TGAGATCCCAACCAAGGTATCACAATGTCATCAACACAAATGAGAGTCTCACAAGAGCGTCTTCAGGCAttgtatttttagaaagaaaaaaaaagtggtcttTAATAACTATAACTGGGCAAGAACTCATCTTTATAGCCCATTATATTGATAGAAAGAGCATATAATGA-CCTTCATTAAAATCTAAAGCttccaattattttattattgttacttaATATCTATTGAGTTCTGGCTTTAATTTTACCCAATTGGTCCAATAGATGTAAGTGTCTTGGTTGGTATAAAATTCAATTTAGACTTTTCTCTGGCCTAATA--TGGAAAAAATACTGTTAAATTTAGTAATTTCTTAACTctcctaaacacacacacacacacacacacacacacacacacacacacacacaactttagAGAGACACACAAACCTGTTCTTTTCATTGATACctcttaaggatttttttttatttctataacagaaaaaaaagggtagaactttctaaaagaaataaaag------gagctaTCACTACACTAATCATCTGTTAGAATAAGATTCTTTTAGTTCTATTTACAATTACT--------ATGAAGAATTTGAAATTAATCTTGGATATCTTCTTCAAAAGTAATTcgcattttcttctttcatttcctgaaCTTCAACTCCAGTTGCTTAATGGCTGACCAAAACATGTAGGGAAAAAGAAGCCAAGCTGGGAACAAC-ATCATGCATTCAAACTGAGCAGGTAGACCACCCAGCGCCTACACAGCAC---TGTCACTCTGGGGTCCTGTGGGAGAGGGCTGTCTCACCCAGACACTGTAACTTCACAATCAGtggttaaatttttaattgcaagatataagtaaataaataaaatatttccatggctTTTCATGGCACACTAACGTGGGTAGACTCTGAAGCAAGGCAACTCTACAGTCAAAATTGAATCGTGTACCTGCTTTCTCA---GAGATCAGAGTCCTCGGGTGACTCATTCAACTGTTCACATAAATTTGCAAAGTGCCTGTTATGTGTACCAGGCACTTG-AGACACT-CCCTGTCTTCGTGAACCTTCAGGACTGGCAGTCTTTCCCTGA---AGTTCAGAAGGAAAGTTCAAAATTCTCTACAGCAGCACAGACCCT

a score=51363
s chr3           143769246 3132 + 160039680 GACCTTTTAAAAAAAAAGCAGAAATTGTGGTGAGATATTCTTTGCATATTATATAGTCTGTCTACTTCAAGT------------ATATATGTTAA--TAATCTAGTTATATAATTATCATCATACTTCTGTTTCAAAATGTTTTCAAAGTGTATACACACACATAGTATAGGTGGATATATTTTCTGAGCTTTGCATTTT----------GTGCTAATTATATATAATAAATTAGATAA----------GTTATTGTAA------AAGACTACAGTTATACAATGT-----GTGTT-----CTCTCATATTATCTTCTCACAtttttgaagtctatctcttttacagtattcatgaatagtttgcttctattccct-gctgagtaatattcctctgcatggatataaaac-ctttgcccatctcttctc-cactt---------taagatgcttctaatttggactattctgagtaaatcttgtgagcaATGTGTAAGTGTAGTTGGTTGTCTGGCTTC---TTTCCCACAGCG-----------TAGAATATCTAGCTCAGGTATCACAGTGAGAGAAGAATTTGGGGTAAATCAAAGACTTCAAATTGAGGCACATCTCAGTTGGATCTACA----TCATATCATCTACATACTATACTATGTATCCTTCTCTCCCCAAGATAAATTTGGTATTTGTTTTTTGAAACCAAGATACTTAACCTGTCATACCGGATTGTCCTAATATGCAAATGTTGAAATATATGTAAAA-TTCTCAGTCTGGACCTAGGCATTGAACAGTTACTAAGTACTTGGTAACTGTTATTCTTTTGGTATTACAATCAGGGAGGAAGGTTTTAG----ATAATCATTCTTGAAATGATTACTA-AGCACAGAGTAATCATAGCATGCTTCAAACTGGGCTTAATCATTTACTCTCTGTGGGCTCGAACAG-TACTTA-TTTTTATGAGAATTCAGTTTCCAATCTATCCTGGCCGTTTTAGGGTTGCTTGAGTGGTTTGTTAGGAACATATG-ATAAAAGACATTAGCATCAAGTTCTGGTACTGTAGGGGAGAAGGGCTTTAATTAGCATAGATCTGCTCTACTTTAGATTCTTAATAAATCATATACTCCAACATTATTTG----AGGGTTTCTGTACTTCTTTCTCCCCTCCCCATACCCAGATTGACTTCTCAAGTGAGGCCCCACATACAAGTCCTTTCCTCACATCTGAGAGAAGTCGAGCTTCTGAA----GACCCATGTTCTGCTGGAAATGACACTCAGCATCTGTGTGGCACAGGACAAACATTTCAAGGTACACTCACTGTGGCGCCAGCAT---AATGACCCAATTTAGCAAAACTGCACATTGCC--------AGACAG--CTTTCCAGGTGAAGACACTGC--CTCACAGGGACTTAGTGGACAAAGGACAGAGCTGGAGCCAGGCTATGTGTCTTAAAAACAGCAATCCTATCCATTCACCCCATGAGTCTGGGTTC-TACCAGAGGAATGAGCTTA-------TGA--------CCATGTGA-CTCTCAAAAGCCCACATGCTCTAGGAAAAGTGGTTTTTAAAATCAAGTTAA-TTTGACTGGT-CTATGTTTCTCTGACTGTCTTACCAGTTTATAAGGTTGATAAGAAACTCAACCTTAAAACTTAATTTTCTGTGATTTGCTTTTTAATGTATTTGCATTATAAAAAAAGAAATAATAATAACCCTGAAGTTTATGCAATCTAAGAAACTAAGCCACTGTGGGAAGGCCTTTTTTTCTTCTCGCT--TTTGATCTATCATGGTCACTGGCGAGACACAAGGGACCCATGTCTTTCCAAAGCTTCTGGAGCCTTTGTTCGGGTCATCAAACCCTGGAGATTC-CACCCTGGGTGTTGTGTCTGCTCTCAGTGTTCCTGTGTTTCGGTCTCAGGGTA--CCCATACCCACAGAAATCTCACCTGCTCCTTACACCCTGAGGG-TAAAACCATCT---TTATGGGCAGGCAGT-----CTGTGCACAGCC----------TCTTCCTTCTCT-----------------------TAAGTTCTATTAATCAAA-GCCATCCTTACAATCCTCTGAAGGAATGGATGCTCTGAACACCCAAA-CAAAATGTTCAGATGGCCTCTTCCACAGCAGGCTGGAGTGCAGCTTCCCAAGATGTCATGGCAATACCACAGCACACAACTCATTTGGAATGTGCTTGCTCGGTCACATAGAAATTGTCAGTAAATCACTCTGCTACAGGT-TGTCATAT---TAGAGAG--------------------------------CAAGCTCAGAAGGAGCC-AGTGTTTCGCTA---CCTTGGATTCTTCGCATACAGAACAATGGCATTGCTAAAGGACATGTGTCTGAAGACCCCACTAGTCCCTGGAGCTACTAATGTTCACTGTAGCTGCC-------------TTGATAT---------TTAAA---TTTTTTTTCTCCTTAATTTCCCATTTTCCTTTATTCTATGTGTATTTCTTTGTTCTCCCTCCCCCAAGTATATTTAGCTATGCAATTTCAAAATGGTAAAGTAGATACCAATGTTGCTAAT-ATAGAAGTATAAGGGTAGGAGACAACCAGAAGAATGATGATAGAAA----------------TGAGAACTACTGTTGCCAGTCTTGCCTTCACATGCTCTCTTTATGAGCTCT-----------CTGCAGATTTGTTAGCATTTC------CAGGGAA---------AGAATGCAAGGACCAGTGGCTAGTGTATACATCTGAAAGTGTGCACCTTGTCTGAGGGTTCGAAGGGGGTGAGAAGGGCGCATG---------TCCAGAGGAGGGAATGCAAAGCTTTCTGCCAAACCCTAGAACCCTTTCT-----GGAGATTGTTTCTTCTGATCCC-ATCACCTGTGCAGCTCTGCAAATTGAATATGGTATTGGTCCAACTCC-GAGAGTAGTCAGCTCAGCCTGGCTTTTGTCTCTAATGGGTCTCTTTATCAGAAAGAGTTCTAAAATGGCTGTTTTAGAAGTGTTTTAGAACAGAGGGAGCCAAACAGGTGATATCTTTCTCCAAAAGGTTATCTTCCCGCAGCACGGAGAAGTTGGTTAACATTGGAGGAGGCACATTTAACAGATTGGCTTAGTCCCCAGTAAAGGTCAGGAG-----TCTGTCTCCCCTCCATCCTTCATG--CTCCTCTTTCCTC----CCTGTTGCCTCTTCTGCTTCAATA---CTCTGTCTTATCTTGAACTATTCTAACTTCCACATGACACAGAGAAGAATACTGGGAATGTGTGGAGAGCATTATAAAACTAACAGTTTATTACTAACTTGTCATGTGCTTAAAACTTGTTAAGTAAG
s HiC_scaffold_1 129966244 3184 + 233722169 GATTTTTCTAAAAGACAACA--CTCTTTGGTGA-ATATATTTTACAAACAATGTAATACacagatttcaaattatactacagtGATACTTGTTAGATTAACCAAGTTGTGCAATCATCACCATAAATCAGTTTTAGAATGTT-----ATTCTTTACCC-----TAGTAAAATCCCTCATGCCTGTTTACTGTTACATTTTCCCACTCCCTGTTCCAGTTAATCATAAAGTATTTTTTAGCTGTATGCCTTTTTCTGTAATCTGATATTAATGGAATtacataatgtctcttgtgtTTGTTTCTCTCACTTAGCCTTCGC----TTTTGAAGTTTGTCTCTGCCAGAGAGTTTATCAatagtttgttccttttttatagctgagttgtatTACATCATGTAGATGTACCACACTTTGTCCATCCATTCACTCACTTAtgaacatttaagttgtttccaatgTG--TTATTCAGGCTA-------TGAGTAATATGCAACTCTATGTTGTTGtacatctttatttctcttacaAAGACACCTAGGACTAGAGTATTTGAATCATACAAAACAGTGa-attttaatgtagaaaaaaacaaagcCCTCAAGTTTAAGCACATCTCAGTTTTAGCCACAACTCTTACATTGTCCCTATG----agtacatatttttttca------------------------tttttaaaatggaagtacAGCATCCATCACATTGGGCAATCCCGAGAGGCAAATGGTAAAGCATGAGTAAAAAGTCTCAGTCtagggccaggc-caggccagttATTA----TTTGTTAGCTATTCCTTTTGAAGCAGTACAATCAGGAAGGGAGAATTTAAGATAATAATCATTT----GATAATTATAAGATCACAGAGTA-CCATGTTGTTCTTCAGACTATGCTTAACCATTTACTCACTGTGGGCATAATCAGATACATAACTTTTATGA-AACTAGGTTTCTCAACTATAATCTACCTCTCAG--TTGCTGG----------TAGGATACTATGCATGAATAAGATTA------------------------------------------------------------CAGATTCTTAGTAAATGGCAGGCACTGAAAGTAATTGGGACAGCGTTCCTTtatatgtttctctttt------aaagaaCTTTATTTATTAAATGTGGACATTCATACAAGTTCTCCTTTCGTAGATTAG-GAAACTAAGCTTCAGAATAATGAGCAGTATAATA----AAATGacagctaatatttattgagcat-taaCTAACATGTCAAG-------CACTAAGATG--AGCATTTTAAGAAGCTATTCCATAGAATTTTCATACTGACCTATTAATAGACTGTCCTTTCATGGGTAAGAAACTCCAGTTTATAGAGGTTGAGAAGATAAAGAACAGAACTAGGACCAGACTTTCTGTCTCAAGACCA-TAATTATAACCATTCAGCTCTAATGTCCTGTTTCCTACCACAGGAATGAGCTCAACCCACCTGATTCCAGGCCCATTTGGGCTCTGAAAATCATACATGCTCTCTAAAATGTGAGTTTAAAACTCAGTTTAAATTTGACTCTTACCTTTTTTCCCTACCACCTTTTCTACTCAATGGAGTCAGTGGGAAAACTAACCTCAG---TTTATCTTCTGGA----GTCCTTCAATGTCTTTGCGTTGTG-------------TAAGAAACTCGCAGTTAATGCAACCagggaaattaagaaattttggAACGGCCTTTTATCCT-CTTGCTGATTCAGTCTGTCTTGAT--------------ATTATAACCACTTCAGTCCAAGACCGGACAATCCTTTGCTC----------ACCC-----ATCCACACCCTGTCTGTGGAGCCT--TTACAGCTCCCCTGGCCTCTGAACTTAGCTTCTTCTCCCATCCTCTATGATCTG---TACTCTCAACCCCATCAGAGATAGAACTTTACAAACTATGAACATGAAGAAACCACTGTGGTTAGCCCAtacctccctttcccttccctcttcaaACACGTCTTTAGAAGTCTAAATTTTACCAAGGAAGTAACGTCTTAACTCTCCCCTTTGGGGAAAGAGACTGAGAATGCCCAAATCAAAAGCTTCAGATGTCCTCCTTTAAAA-GGGTTGGAAAAAGGATTCCCAATATTTCATGGTAAACCCATATGACACAGCTAACTTTGAGTGCAGTTATTCTGCCATATTGTA-TTTTCAATAAATCATTCTGCTACAGGTCTGTCAGATATTCAGAAAAACCAGATTTGTGAGCTGGCACTGCAGATGTTTCAGTCTCTGAAGGGCCCCAGCATTTCACTAAATCTTTGGTTTC--AACCAACTAAGTGGTGATATTGTAACAGGA-------------ACCGTGCTACTCCTTGGAGTTACTAGTGTTAGCAGTAGTTGCTGGCCCAACAGAAGTTGGCATAGtacaattttaaagaatttttgacccccatattttcccattttccttt-tcctatgtctatttctttg------cttttccaaTTATATTTAGCTGCACAATTAAAAAGTGGCAAAATAGGTGCCAAAGTTGCTAATTATATAATTATGAGAGTACAAAGCAGCCACATAAAGGGAGGTGGAAAACTCACTTGTTCCAATTAGGAAATATCG--AAAAGTTCTGCC--AACAGGCTCTCTTGCTTGACTCCGTCTTGCATTCCTCCGGAGAGGGCAGTCCTTCGTGTTTTGGGGAACGGGCACCCAGGTTGTAGAGCTCGGTGG------GATAAATT--GAGGTGCTCACTCCACCTGATGACTTGA-GTGAAtgagcaggaagcaggaagcaggttTTCCTGGGAAGCAATGTCAAGTTTTCAAACGAAAACAATGAGCCTTTTTCTAAAAAAGACTACATCTTCTGATCTTGATAACTTGTGCAGCTCTATAAATTGTACATGGTATTGGGCCCATGCTAGAGAGAAATCGGCTTGGCACAGCTTTCATCGCTAATGTGTCTCTTTATCTGAAAGAGTTTTAAAATAGATGTTTTAACAGCATTTTAGGAAGTGTAGGACTAACCAGGTGATATCTGTCCCCAAAAGGTTATCTTCCCTCGGCACAGAAAAGCTGGTTAACATTGCAGGAAGTGCTTTTAATAGAT----TTAGCCTGCATTAAAGGTCAGAAAATGGTTCCTTCTTTCCTGGGTCCTTTCTGgtctcttctttctccatttcttattGGTTCTCCTACATCTAGAtgtctcttctttaattttaaatattctaagtTAAATATTACACAGAGAAGAATATTTGAAATGC-TGCAGACTACAAT--------CAGTTAATTAC-AATGCATTGTATACTTGAAAATTGCTGAGAGAG

a score=65118
s chr3           143776520 2641 + 160039680 TTCTAAGTCACTCTTCCCTGTGAATAGAGATATCTGTGGATTTGGCTTTGTAGGAAACTATTGTCTCAGAATTTTCAAGTTTTGT-GGCTCTAAGGTTTGCTTTCCACCTTTGTCCCTCAAGTTCATAAAaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaaaaaaACCATGGATCCCCCAAGGTATACCAGTTGGCTGTCAGTTATTTGGATTTTGTTTTTTCTTATTTTGAGCTTCAGGGAGCTTTCTGTCACATATTCTTTGCTTTCATTCATTTTTTTATTACTGAAAATTTTTCTCTACCTTCTTGTCTTTTAGATATGTTTTTAATGTTTTGTGAATTAATGTAGAATTGTAAAAGGAAGATAATCGACTGGGCTATGTAGCCTCTATTGGATAAACTAGACATTCTTGTTTATTCTTTTTAAAAGTATTTATATCATGCCTGAATATTGAAACAATATGAAGTTTGTCAAGCCACAAAATATTACTTCTATTTCATGATTAAACTCCTCAAGGATTATTAAATGAGAGATGATTCCTGGATGGGAAGATTAGAAAGAACTCTGATTTGAGTCTACTTGCATTCATATGCATGGTGTCAGAAGATAGAATATTATCTATCTATGTAGTTAGCATTGTGAGGAGAGGCAAATGTTGATATACACCCATGTTTTTAAtcactcagtcaaagatatatattttgtacttgctggaagtcagactctaggctagaaatccagctggggagaagacaaaatggaactttgcatccacagagttGTGCCTGTCTGAAAGTTACTGTTTCC-----------------------TGTCACCTGTG---GGGAAAGTCAGGTCATGAACAAAAGCTCTTGGGTACAAAGAAAGAAGCTACAGATGGCAAAGG--------------GTGAGGCT------GGTTATTGAGAAAGTGCCAA-CCTGCTACATACAGTAGCATCCCCAGACATGAATCTATAGTCTTTAAGAGCAAATCAGACTTCTTAA------------GTTTGCAAGCAGA-GAGTGCTTGGGGAGCCACATTTACAAGGTCTGCAGAGATTGTAAACGTCTCTAATAAGAT--TTTTGCATCTGCTGTGTATCTCACACTATGGTAGGTAGAGTATTGGAAACTGGCAGCACATGAACTAGAACAAGGACCCCCCACACAGCTTACTTGTCCTAAGGAAGACAA-AAGCTCCACGTTGAACTTGAATCTT-----GACATTGCCTATCCAGAACATTGGTCCATCATGGGATGTCAAAAAATGTCCTTTATTTACACTTCATGC--------AGGCAAACTCTATTCAATAACAGTCTTCCTAGCAAGAGCTCCCCAC--------ATGCCACTGGGGAACAATTGCTTTGCTATACAGCACTTAAAGGGACTTTAAAGGGAAAAGACACATTTCACACACTTATCTACTGTGGTTGGGAGTATGCTAGGGAAGAGATTAGTTTTAAATTATTGAATCTGCATTCCTTTGAGATATCAACATAATTGCAGAGAGATACCtttaatttttttatatatatttacttattaataaaGAT-GAAATTTCCATTCATACATGGAAAGATTGGTCCAGTGGAACAGAACAATGGTGTAATGAAATCTCTAGTTCATTAACTTGGAATGCTGGGATTGAATTACTAATTTATGTTGTTTGTAATTTCataatataaattatactattttaaaatataGGAGAAAATGGTTCCCTTGGAATCTGCCTTCCTCTAACTCTGACTAGGAAAGTTTTATTTGTCCCTCAGGAACTGGGAAGTAGGGAGATTCACTGAAAAATGGCCGTTCCACAGGAGCACACCATGAAACATTCATAGTCCTGCTTCCTGCATACCAGGAGGCTTAATAAGCAAAGCCAGCCCCTGACAAATGCTCGTGGTATTCTATGGCTTTTGAAAGATGTTTTTATAAAGTTAAAGGTAGATCTTCAAAATCTGACTTCAGAGGGATTGCCAATTTATTTTTTCCCAAGGGACCCACTCAGAGATGAAGACA-TATGCACCATTTCTATgaattagcagtttggaagaaaagggaaaagagggaaagagggtgagcctgggtataggagaggttggatgggctacagtgcaatctcaaaggaggtctcagccatgccagaactctggaactgggctgaccatcagaAGGAGCTAAGTGGGTCAT-CATTTACCTTTGTATAGACCAAATACTGGATGAAGGATGATCCAGTGAAGTGGGCATGGCTTTGAGTGGAGT--------------ATGCAGTTCC----------------------------GAGCTGCAGTAGTCATATGTCTTGTAGT-TTGAGTAAGGTATCTAGAAGCCTCACTGTAAGCTCCTCTACCAAAAGGAATTTCAACAAAATCAGACAACAGCATGTCCAAACTGAAGGGAGGAAAAATAAGTGAGTTGAGAGATTTTGATGCTCACAAAACATTACTTTCACTTA-CTAGGAATCTTTTTTTCATACATAATAGTCATGTGCAGACAAGATATTTTGTTTTACAAGATGCCATGAGGATAAAACAAGT---CAGGGAAAGAGATACCAGGCACT--GGTCATG--ACATAGACTAAGC------TACA-GTGTGTACCTCCAAAGCTCATAAAAGCTATTACATGATAGGTGTTGATTCTGGAGAGGGAACTGATTCCATGAGTATTAAAAATTCACTAGTGTT
s HiC_scaffold_1 129974480 2464 + 233722169 TTCTTAACCACACCTTTCTATGGATGAATGGTCTTGCAGCATTGCGTTCATAGGATGCTCTCCTGTCAGACTCTCCTAGTTAGGTCATCTCTGAGATTTGTCTCCTATCTTTATCCGTCTAATTCA--------------------------------------CTGAGACTAAACTTGAGATGTTCCAAGG-ATAACAATTGGCTCTCagttattttgattttgtgtgt----gttttgggcTTCAGGGAAGCTTTT-TCTCTGAATTCCTACTTTGGGTCATTTTTG-GTTCCTGAAGATTTCCCT---------TATCTATTGCAT----------TATCagatgaatgatttttaaaatgtaacacaaATATA-------------------------TAGATAA-------------------------------TATTTATAACATG----------------ATA-----------------------ATTACCTGAA----------------CTTAAAGTATGTCAGATATAAGAAAGTCCATGTATTATGAGGTTTCAAAGAA-TCCAATATAAGT-TATTTGTCTGTACATATGCAGTGTTAGAAGGAAGAAGTACATTTGTTCATTCAGATGTCCTT------------------TCATCTGCAGACAGGTATTTACT-------------------ATTTTCCAGAGGTTAGAAAACTGACTGGGTCCTGGAAATAAAGCTGGGAATAAGAAGAAA-GAATCCTTGCCTTCATAAAGCT-TACTGTCCTGAAAATTACTGTCCCTGCAGGCCTCACAGGATAAGCTGATGAGACCTATACAAAGAAAAGTCAAAGCATGAACAGGAGCT-GGGGGTGCCAACAGGAAAGCTGTAGGCTCCAGAGGTGTGGACGTTCAAGGAGAAGTTCATGGGAATCATTTGAAAAATGCCAGGCTTGCTCTTGGCAGGA-CATTCC-ATGCATGGG-CTAT-GTATTTAAGGGCAATTAAGACCTCTTAAAGAGATCATGATGTCTGGATAGGGATGATCACTTCATTAAATGCCTTTACTGGGTATTcaggaattttaaatatttataataagatatttttgcatctgttgtaAACCTCAAATTACAATGGATAAAGAATTGTGAAATAGTAG----TGAGCTAAAATTAAGGCT----ACACA-------TGTGATTATGTAGATAAGAAGCCACGTATTGAACTTGAATCTTACTGAGGTGTCACTCATCTTAATCAATGGTC---------------AAAAAtgtcttttgtttgtgtttcatACTTCTGGAACGATAAAC------CAAGGAAAATTTTCCCAATAAGCACTTCTCACGTTCTCACATGCCACTGGGGGACAATTACGTTGCCACACTGCACTTAAAGGGAGTTTAAACTAAAAAGACACAAATTTCACTCTTATATACTATGGTTGTGAATCCATTAAGAAAAaggtta-tttaaaattattgaa-cTGCACTGCTAGGAGACATCAACATAATTGCAGAGAAGcaccttta-tttttatatatattttttcttattaataaaaaaagaactttctaTTCATACACCAGAAGACTGGTCCAGTGGAACAaaacaataatgcaaagaaaTCTCTAGCTCATTAAACTGGAATGCTGGGATTGAATTACTAATTTATGTTGTTTATAATTTCATGATATaaattatactattttaaaatataggggGAAATGGTTCCCTTGGAATCTGCCTTCCTCCAACTCTGACTAGGAAAGTTTTATTCATCCCCAAGGAACTGGGAAGTAGGGAGATTCCCTGAAAAATTCCTGTTTCACAGGAGCACACCATGAAACATTCCTAGTCATGTTCCCCACATTCCAGGAGGCTTAATAAACATACCCAATCACTTACAAACACTCGCGGTATGCTAGGGCTGGTGAAAGatgtttttataaag-aaaaggtgGATTTTGAAAATCTGACTGCAGAGGTGTCACAGATTTATTTT---CCCAAAGAGCAGCTCTGAGATAAAGACAGCAGGAATGGTTTCTAGGAATTAGCCCT-----GGAAAAGAACTCAGTGGGAAGGATGG-------------AGGAGAGGTGGGCTGTGCCACAGT------TCAAAGAAAGTCTGAGCCAGGCCTGGAGAAGAAAACCGGGCTGAGCCTCCGTGTGGGC-AAGGAAATGATCCCTCCACCTCTGCACAGCGCCATCCTCAGGTGGGGGCTGACCCAGGGAAGTAGG-GTGACACGGGGTGTTGTGAATCCTGCACCTAAGGCAATTTCAGAAGAAGCCCTGTCTGCCAGAATCCTAGAGCAGCAGGGACGATCAGTGTCGTGGTCCTGAAAGAGGT-TATGGGAGGCACACCATAGGATCCGTTATTAAAAAGAActtcaataaaa-cagaaaaacatttgcCCAAACGTAATGAAGAACAAATCTGTT-TTTGAGAGAGTTTAATGTTCATTAAAtgtacttttcttttatttagtaaCCATTCCTAC---TGTAGTCATCACATGTAGACA----------TTTTACAAGATGCCATAGAGATGAACCAAGCACACGAGGAAGAGGGCACCATGCGATGGGGCCATGCACTACAGGCCAAGCACCTTGTAAACATGTTTCCATCCAACTCTCAC---------------GTCAGTATTAGTTCTGATGAGGAAAC--ATCTTACGAGCGTTAAGAATTGATGAGTATT

a score=110792
s chr3           143780258 4648 + 160039680 [encoded data, 5115 characters]
s HiC_scaffold_1 129979181 4541 + 233722169 [encoded data, 5115 characters]

a score=9710
s chr3           143787731 602 + 160039680 CTCAAC-GTCTGATAGCTGGTTCTTCGGTTGTTTTGTTAGCTAATAGTAATATTGGCTCCAA--CAGGATCAGT--------TCCCTGTCTTGTAAACTTACTGAACCCCAAATAGTCTCAGGTCACTGAGCTGTTTTTAGAACTGAAGTTTAGTCTACCTTTCATTTGACGAGAGTCCCCATCCTATACATGAAAAGCACAGTCGTCAACCCT----GATTCCA----CGCCACCAGGCCTTCCTCAGCTGACCA-CTCTGAGTCCAG---CTGAGTCCATCATCAGAGAGG-CTTCACCGTGTACGAACCTAGATGTGCAGCT-GAGTGTGCCTGTTGGTGCTTGTCTTGTCGCCTTATGAGTGA-------CTTTGGCCTCAGAAGGGAACACAGCA---TTAGACAGG-----------CTGTCACCAG--ATTTTACAGTCTCTGTCTCACTAATGTGAACTGCAAAGAGGGAAG-GAGAGGGTCATTTGTATAAGCCAATATGCTG-GAGCTGTGTCTCCATTAGTCGCCAGTCTGACAACTTTATAAAACAGTCAGTGAGAAGTGCACGTTCTGAAAGTGACTTC-----AAAAGAAGAAAGTCAACAGAAGG---------AATGGGAGGAGGAGGAAAACAAG--GGAGTAGAGATAAA
s HiC_scaffold_1 129987260 645 + 233722169 CTCAACAGTCTCGTAGCTA------TGATGACTGAATTTGTTAATAATACTATTGGctgtaaattaaaattagtatCAAATATACATGTTTTCTAAGCTGATGGAACTTAAATTAGTCCTAAAGTATTGAAATAGTTCTAGAACTGAACTTTAGCAAACATTTCATTTGGTGCAAGTCCATATTCCTTACATAAAAATTCATATTGGCTGCATTTTGGGATTTCATATCTGCCCCTGGGCCTTC-----TTGACCATCTCCTATCATAGGCACAAAGTCGCTAACCCCAGATGCCTTTACTATACGTGAACCTAGATGTTCAGTTCAAGTGTGCCTGC---TGTTTTTCATGGCACTGTACTAATGCTCTGTCTTTTTGGCTTTATGAGGGAACACAAAGAACACAGACAGAGTTAGTATGCCCCATCTCCAAGTGTCTTAAAATCTCCATTT--CCAGCATTTACCATGAATAAAGGAGCAAAAAGCTCAAGGATGCAGAGTAATACACTGAGCATTTTATTATCATTAGTTG-------GCCATGTTTGTAGGATAGTCAGTGAGGTATATAAGGTTTGGAAAtaactttaaagaaaaggaagaaagagaggaaaaggagagaacaaaatgggaagagaaggaaagaaggaaggaacaaaTGTAAA

a score=67097
s chr3           143806489 2153 + 160039680 CCTTCCTTTCTCTGCCCCACCTTAGCA------CTATCCTACAACAGTTTGAATATTCTCTCCGAATATCTTTTTAAACCAGAAAAAAACTTAACACCACTTCATGAAAAAGACCAATGAGGAGGAAACAGA---ATGTTTGTATGATGGCCTGTTGGCTTCGGGTTCTCCCTTTTGTAGTTTA--TCGAGTT---GCCTAGCATTTCCTATTGTGGAAAAACTTGAAGAAAAAAAAATCCCAAAC-----TGAAGAATCTACGTCTCAGGAAAGTTTAAGAATAGAATTGGTAAATTATGCAAATTAGT-TAGGATCTGGACTTCAGAGAAATTAGACTAGATTTATTTAACGAAAGTTATTTTTTTATTAAAATAGAAAGTTTTAATTCTCCAGGACTCAGATACCTATTTTTCTCCAACTGGCAATGTTTTTGAGAAATTTTGTGAGGAAATTTGGCACGCATGAACTTAAATCTGTCTGCACCAGAGG--AGGAACTCAG-TAATTCACACTTCTGAGTTTACTTGTCGTCGAGTAAGCATGTATGTATAGCCTATACTTAAAGTAG-TGATTTATCTGGGTCAGACAAACAGCACCACTCTTCCACTCTCTGCCATGCCTTTTATTCTTGAAGACCTCACCCCCTA---------AGAGAGCCTGCTACTTATCAGGAAACCAGACCAGTGAATAAAGTTGGTTTCGAGTAGCTCTGGCCTTATAGCCTTACCTGAATTAATGTTTAACTCAAGGCTTTAAGAGCACAGGAAAGAATTAAAAGTGGAGAAACTCCAGGAAGGAACAAGAGAGTTGCAGGGTCTTGAACT----------GCTACAGAAAATGAACTTAGCCATAATATTGCAGAAAGGATGAAGGTAGGTTTTGTGTGCAGTGCCTCTGTTC------------TTCCAACCCACCAGGATAAGTCAGATGGCCAATTGGTACA---GATGATTCCACCAGACTCTCGGTGCTCAACC-----------------TGACTTGCTCAGCTTTCT-CAGCTCTATACAAGAATGC-tgagaggttatttgtaagccaggccatgttctaagcaatttctcaaacattagctaaatttagatcctccacagcaagggttagtattgtgtgttggcacaaagtaagcactcagaaaatactgaagaaattgaagcacagaaagactaggcacagtgctcaaggtcaggcagctagagggttgtaggacctcattaaaaacccaggcagtctggctccagagcttaagttcatcagcgccatgcaataccgCGCCTGCAAATTGCACCAAGCTCCGACCGTTCGCCAGCCGCCAGTGCTTGTGAACTCATTAAAGTATACAGTTTCTTCCTTGGCCACACAGAGTTCATCAACTGCTCTCAGTGCTGAAGTGTCATTcag-aggaaagttctggacaggagtcccaagaggccgttacaagcaacaactccaccacaagctagaggcatgacaaagcatgctacctcttctttactcttt-gtttccttggctctaaaaggagtgaaaaggactccagatgactttaaggtctc-ttcagctatgatattttatgaacctgtgTCCCTTATT-TTTGTTTCTATTTCTCTTGGGGGGTTTTTAGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGTTTTGTTTTTTGTTTGTTTGTTTTTTTAA---TTACAGAACTTGGCTTTTATACCAAACCATGTGACACAAAAGCTACTCATGCTGTCTGCTGTGATATTCAAGTAGTCTGTGAT----ATCTGTGACTACTTCCAGGGACTCGGTGTCTAAGGCGGGAGACAAATATGAATCAACGGGATATTCTAGTGTCCTGA-AGAACTAGCTCAGCGTTCTTCCCCAAAggtactg----ggaaaaggtgaagtcactgagaggaatctgctgtaaatagggacaagatttttcagaggcaatagtgaaaaacaattgcaatca--caaattgaaaagaatctaaaatatatacaagtagatgtattgttttgtctaactataacttggcttcattatagttccaatatactgtaattcttaaaatgaaaaggattagttaagtgttgacttttggggttatatttcTTCATTAATA--AAGACTGTCTGACTGGGTGAC-TTTATTTAAAATTTTAACTAGGACCTGATCATTGAAGAATATCTTTATTAGG
s HiC_scaffold_1 130004455 2099 + 233722169 ccgTCTTCCCCCATGCCCACCCTATTAGAGGACTCATGGTAAAACAGAATCGATGCTTTCTC--AACACcttta-aaacaagaataaaatatagtCCTTCCAAATCTTACTGACCAGAGCAGGGGAAGCTGATACACATTGGTAAGATTGCTTGTTTTCTTTGGATTCTCA-TTTTGTAACTTAGCCCGATTTAGAGCTTAGCATTTCTTGTTGTGAGAAACCT------GAAAAGAATTCTAAGTAAAGTGGAAGAATCTACTTCTCAGGAAGGTTTAAGAATAGGATTGATAAACTATGCAAATGAGCATGAGATCTGGACTTCAGAGAAATTAGGCTagatttatttaacaaatgtt-----tttattaaaatagaacgTGTTAATTCTGCTGGACTTGGATACTA--TTCTCTGTGACTggta-tatttttgagaaaatttgtGAGGAAATTTGGCATGCATGAACTTAAATCTGTCTGCAGCAGAGGCTGGGAGATGAGATGATCCAAACTGCTGTGTTTGCTTCT-GTGCACTATGCATATGGGTGTAGCCTGTATTATAAGCAGGTGATTTATCTAGGTCAGCCAAACAGGGTCATTCC--------CAGCCACACCTTCAATT-TGGAAGACTTTGTTACCTAGTCAAACAAATATAGGCTACTCTTTATCAGAAAAACAGACTAATGAATACGGCTGGGTTCCCCCAGTTCTGGAATTCTAACTAtaactgaattaatttttaactCAAA-CTCTAAAGAAGCA--ATAGAGTTCAGAGCAGATAAAGACCATGAAGAAATGACATATTTGTTGAAATTTCAACTTACATAGATAACTACATAAAGCAAACCCA--------ATGGAAGA--GGAGGAATCCAGTTTCTG-----GGTGCCTCTGACCGCCTTCCCCTGGTCCCAGCCTATCAGGT--GGCCAGGTGGTCAAATGATACATGGAGTAGTCCCACCC-ACTGTCACTGCTCAACCCCCACAATCCCTAGCATTGACTTGCCAAGCTCCTTACCGGTTCACATTAGAATGAGTGAGAGGTTAACC-TGAGCCAAGCCATATTCTAAACAGATTCATAAATATTAGCTAATTTTAGACCATTTGAAGTAAACGCTATTATTTCCC--TGGCACAGAGGAAGCACTCAGAAAATACTCAA---ATGGAAACATGGAGAGATTAGGTagcttgcccaaggtcactcagCTAGAAAGTGGCAGGACCTCATTAAAACCCCAGGCTGTCTGGCTTCAGAGCCTGAGTTCATCACCTCCGTGCAGTCCTGTACCTGCagactgca--gagttctgagcagcaACCAGAAGCCAGTGCCTGTGAAGTCATTAAAGTATACAATTTCTGCTTCGACTACACAAAGTTCATCAACTGCTCTTAGTGTTCAAGTGCCATTTAGAAAGGAGGTTCTGGACA-GAGTCCCAAGACCCAGTTTCAGGCCACAACTCTGCTACAAACTAGTGGCATGACACAGCAAGCTATCCCCTCTAGATGTTTCAGTTGCTCCCACTGTAAAATGAGGCAGACAGTCACTACACGATTTTAAAGTCCCTTTTAGCTGTAACATTTTATGAATCTGTGTCCTCTAGTAtctgtctttatctctctta------------------------------------------------------------------------CTTCTTAAGAGTTATAACAATTGGCTTTCATGCCAATCTGTGCACTACAAAAGCTGTAGATGGCATTTGCAGTGATACTGAAGT-GACTGCAGTCACAGTCCCTGAGTGCTTCCAGGGTCTCAGTGTCTAAGGTGGGACACAGACA-AAAGCAAT--GATGCTGTGGTGCCCAGAGAGGACAAGCAGAG----CCACCCCACAGAGGATGTCCTGAACAAGCAGAAGCCACTAAAGAAAATCTGCTTAAAATGAGAACCAAA-TTTTCTGAGgtcacagtgaaaagaa-----aatcatttagatttaaaagaatctaaaatacatgaaaacaagTGCACTATTTTACCTAA-TAAAACATAATGTCATTATATATCCAACTAGTTTTCATTctc------aaaagaatgaataaattgtTAATTTTTGGGTTGATATTTTCCAACAAATGTTATCACAGCCTGTGTGGACAacttttgtttcaaattttacCCATGATGCagtcaat-aaaaataacttttttggg

a score=113055
s chr3           143810899 5497 + 160039680 [encoded data, 5963 characters]
s HiC_scaffold_1 130014510 5202 + 233722169 [encoded data, 5963 characters]

a score=15502
s chr3           143817614 653 + 160039680 TTTGTTGGTTTGTTTTTTACATATAACCCCGTAGCTTCCAAACTTTCCCTGGAGCTATGTGCTATCCACTTTGATTTTCTTATTGGATCTG-GGCTTGGTGCTTTACACAGTAAATATTAATTGAACGCATACATTTGATTTATTCAATTTTAATAGTTCTTTGAGTAAATTTGATGTTGGTTGCATTGATCGAATGCTCAACAAAAGAAAAGGTTTCACAGACTATT--TTAAGCG----AAGTTCAGGAAGCATTCCTCAGAATAGCTGTACTGTTCCCATCAACTCGCTGGGAGGTAAAGAGGGTCTCGCACAGCAAAGGCAAGGTCTCTAGAAGGACTGAGATGGGAGGGCGATGCACAGAGAATGCCTGTTCATGTGCAGCCTGCACTGGA-----GCAGGCAAAGCCCTGATCCACACAGCATCCTTATCTCCGTCTTCTGAACCTGACGATGTTTCATTAGACACAGAACATAGCTCTACTATCAAGGCGAACACATTTACTGTGTAATAAACACAGT-------CCCtgttttcctg-cccattttttctcttcagtgaattctgacatcaattttttttctactggtctc--tgcttcctctctagcaactttacaaggcactacctgtctttgatgcttttaaaccctactataaatatctaggt
s HiC_scaffold_1 130019916 631 + 233722169 TTTATACGTTAGCTTTGTGCCTATAATCCCTTAACTCCCACATTTTTGCAGGAGCTATGCTTCATCCACCTTGCCATTCTTGTTGTACCTACAGCTTTGTGTTTTGCATAGTAAACATTTATTGACATGGTATGTTTGATTGACTCAATTTCCAGAGCTTATTGAGTAGATTTGCTGTTAGTTTAATTAATCAAGTTCTCAGT-GGAGAAGAAATATCACATATTATTGGTCCAACACAACAAATTCAAGAAACCTCTGTCAG----------------CCGCCTGGGTGCTAGAAGATGAAGAGGCTCTAACAAAG-AAATTCCAGGCCAGCAGAAGAACAGAGTCAGGAAAACAATGTACAGCGAAAAACTGTCACTATGTGACCTCCACTAAACCCTTGACAATGAAGAGGAGAGTAGAGCAGAGTTTTCACAACTATCTTTTGAACTTGACAATACTCCA-TAGA------------------TGtcaa-gcaaaaatattt------taccaaatgCAGTATTAGTCCTTTATCTTCCTGACTCTTTTTTCCTCCCCAGAGAAGTCTAATGtcaaatttctttccctttctattgatgttttttctttcatagccttaaattttattatttggctTCATTGCTTTTAAATCCTACCATAAACATATGAGT

a score=268434
s chr3           143820600 7068 + 160039680 [encoded data, 7318 characters]
s HiC_scaffold_1 130024448 6694 + 233722169 [encoded data, 7318 characters]

a score=159818
s chr3           143828526 7429 + 160039680 [encoded data, 8408 characters]
s HiC_scaffold_1 130031363 7777 + 233722169 [encoded data, 8408 characters]

a score=284878
s chr3           143861309 9044 + 160039680 [encoded data, 9607 characters]
s HiC_scaffold_1 130050095 8734 + 233722169 [encoded data, 9607 characters]

a score=54309
s chr3           143878254 2269 + 160039680 TAACATTCTTACCTTCTGAATTCTACGACAATCATTTCCCCACAGGGAGAG-ACATGTGGCCTTGCAGACTGAG--------CTGCTGAAATCAT-TTCCAAGAA--GTAGAAAGTGCAGTTTGGAGGGTGTGACTTGCAGATCTCACTT---CTTGAAGCAGAGGATGTCTTCCAAAAAACTGACAGGAGCACAGAGCCTGTGTCATCTCCATTCCCAGTGATTTCTCCTTGATTGATGGGCCATTAATGCTTTAATTGGCAACAGGTGCGGATGATTGCTGCTTCCTATGCTGAAAGATATGAAATTGAACATAAGGTTCTGATAAATTAATAAACTCCTCTGCTCCAAACAGTTGTTGCTCCAAACTAACTTTCCACGGAGCACTGCTCCATCAAGCACACTGAATCCTTTATGTTAAAAAGCAAAGTGTTACTTAATGATGAATTAAAATTACACCAAGAGCCACAGATAGAACATAATAACATCCCCTTCCCAGGGAAAAGGGAAATTGCTGCAAGGAGCCAAAGAATATGATTTATGAAATAAATTGGTTCCCTTTTGTAGACCAAAGTGTTTTGTCTCTAGATTCCATATCatattattaaaaataattttgtgttatttaatataaatGGGAGAATAAAGGA--------TTTTAAAATAAGGTCCTTTCCCCTCTGAGGTAGAAATTAATATTGAGTCAAAACCTAGGGGGAAAAACTTCTTAAGTTTCTATATAAAAGATCTTAAGGTTATGCTTTAGTTTATTTATTAACCC--TATGTGTTGAGGCTGTTCACCATAATTCTGCTATAAAAAGTTGTCTTTAGC-CCAGAATCTTTTACTCATTACACTAGGTCCTAATTGGC---------ATTGCTTATTCGCAGCAGTGGTTTTTAAAGATGAAGGAATCCCAGG-------CATTGTCTCCATCCTCGAAGTCAAAAGTAAAAGGTACCACCAAGGCCTGAAGGCTGTAAAGGCCAAT-GATGTCTGAGCCTCACACCCT-GCCCA------------------TGTAAGAAATGCAGACACTGAGAACAGATGG-------GGAAGGTAGGC---TTATAGTCTTAGCATGTGTGAGTAAGAGA---AGAGGATAG--TAGAAAAA---------TTATTCTATACATGCTTTCTTCAATCATGTGGATCTTTCTCTAGTGTGCTATCATAACTTAGGGTCAAAAAAGCTAGCCACAGGAACCTAGAACTGTCTTTTGGTTCTTGGGACAAAATAAG--AGCAAT------GGGCACAGCAGGCAAGGTCCCCTGCTGTTTTCTTTTGTCTCAAATAATGA-------------------TGTCCCAAC-----CAAATTGCTACAAGGTTATTTACAGTCATTTATGAAAA-GAAAAGGCAGGGACAAGTTAGA--CAGAAAGAGCGTTTATAAAAAGTCCTGTTCCCCATCATGCCTCTATTGGGAACAAAAACATGAA-----------TTCTCAGAAGACTGCAAGCTACAGA--GAGAATTTTG---------CTTTTGTCCCCCATTGGCAGG---ACTGATGGTGTCCCAGGAGAGTCAGGGTGA--CAGCAGAGACAGTGAGACCACTG------GAAATGACACTCATATGAAGAAC---TGGAGTGACCTACACTCAGGGAAGTGCAGTACGTGAGACAGACCAGAATTTAAAATCACAGTAATAAATATCTTCCTAAAGATATTTATTATTAAATATCTTTATACTATTCCTAAAGAGAAAAAAAGGGTGGAGCCTGTCAGT-----AAGAGCAAACACCATAAAGGAAAAATCTGTTATCATTTAGCTATAAAAAAATAAAAGTG---TGTCTAGTACTTGGGTTGACTGAAGA--GCAGAACAGAAGA------------------TTTCAAAGATGACACCATGATTAAAAAGAGAAAAGAAAAGGAAAAAAAGGAGTG-------TAAAAAAGT------AGCGCT----------GTGTAAAGCC-----TCCCAAAGTTTTTTAAAAAGGAATTCCAATATTGAAAAAAAA------AAAAAAAAGACAGTATAGGGAATGAAGCCGCAAAGAACAAATGGCAGAAAATTTTTCCAAAAGTAAGCCC-----AATCAGAGGCTA-TTTCAAAGTCACAAGAACTTGCTCAGAGTAAATGCAGAAGTGAGGGAAAGCA----------GAAATCCCTGTCCTGGTTGGAAAAAAGGTTCATCTCTGATAAGCATTTGATGGTGACAGAAGGAAATGTACCAAAAATGATGGGTATAAATAAGTTAGCAGCAGTCATTAGAAGGA-------AAAAGGTGTAATCTTCAGAGA---AGATTTAAGTTAACTTTAACCAGAGAAAATTAGGGGAAAGCAACAAATGAAGAGATCAATAGTAATAGAAAATATTAAATTATACTTCAGAGATCAATCTTAACATTAAAAAACCT
s HiC_scaffold_1 130062360 2397 + 233722169 Tatcattattactttttaaat-ataagacAACAGTTTCTTCCCATGGAAAATGCATTTGGCCTCACAGTCTAAGGAATTCAGCTATTAAAATTGTAGTACAAGAAAAGTATAGAGTGCAGAGTCAAGGGTACAGTTTGTAGATCtcacttatttttgaaataaatgataACTTCAAAAAAA-TGATATGAGTATAGAGCTTGTGTGATCTCCATTCCCAGTGATTTTTCTTTGATTGATGTGCCATTAATACTTTAATTGGCAACAGGTGCAGCTGATTGTTGTTTCCTAAGCTGAGAAatctgaaattgaacataaggtTCTGATAAATTAATAAACTCCTCTGCTCTAAACAGTTGTCGCTGAGAACTAACTTTGCATGGAGCACTGCTCCATCAAGCACACTGAATTCTTTATGTTAAAAAGCACAGTGTTACTTaatgataaattaaaattacacaaaGAGCCACACATAGAACATAATAACATCTTCCTCCCAGGGAAAAGAGAAATTTCTGGAAGGAGCAAAAGAATGtgatttatgaaataaattagtTCCCTTTTGTAGACCAGTGTGTTTTATCTCTAGATTCCATAtcacattatt-aaaataattttgtgttatttaatataaatagggaaaggaagaataaagatttttttatgtaagtttctttttttcctgaggaaAACCTTAATATTGAGTAGAAACCTA--AGgaaaaaatcctgaaaattc--TATGAAAggtc------ttatgttttgttttatttattaaccCTGTACATGTTGAAGTCACTTATGATAGTTCTGCTACAGCAATTTGCCTCTGACACTCGGAGCTTT------ATACCTTAATTTCCTATCAATGAGAAACAGACCATGTAATCACAGCTCTGGT------------GGGGATGCTGAGTGGGTACCATTGTCCCTACCCCCTAAACCAAACATGGGAG--------AAGACTCGGAATAGAAAGAGGCTGATGGGTATCAGAACTTCACCCTCTCACCCACTCAAGCTACACGAAAGCTATGAGAAATCCTAATGGAGATAGGAGATGGTCACAGCATAGGGTGGGCAGTTGGTGGCTTTAACGTAAGAGGGTTAGAGACCCATAGGATAGACTAGAAGGGGAAAGACTTCTGTTTTACACTTTTTCTCCTC---TATATGGGCATTGTGTTGCTGCACTGTAGCTATTAAGGATCAAAAAGGC-AACTGTGGAAGCCAAGTGCCAT-TTTAGGACATTGGGACTCAGTAAGAAAGGAATCAAAGAGGGTATGG-AGTCAGTATCACTGGGTGTACTGAGCTGGCTGACCCCGTGAGCTCATCACCCACCACCCTTCTCTCCACACTGGCAAACTGCTATGAGGTTA--------AacttgggaaaaggaaaaagtgaggATGAGTTGAACCCAGGAAAATAATCTCT-AGAGTTCTTCTTTCCCATCATGATCCACTTGAAAACCAGACCAAGCAAAGCAAAAACCTTCCTAGAAGGACACAAGCCA-AGACCTAGCTTTTtgtccctccctctttctttccttcttggcaAGGGCAACTATGGATCCCAAGGGAACTGAAGATGAGCTCACAGAGgagctcagaaaacagaaaggagaagcatcCCCAGTATGAACAACAATCAGAGAGACCCTTACCAAAGAGAACCAAATACAGGAGACAGACAAGAATTTGAAATAACTATAAGAAATAActtcagaaagaca------aaagaatataGATGCATGAGGTGGGAGGAAACTAATCAAATAGAATTACTGGATATACAAAAAACAATGactgaatttaaaaaacatatattaaTGGATGCATCAGAAAGCACATGGATACTGCCATAGAATGGAATAAACTGAAGAAGGTAATACAGGGAATGGGCATGGagggaaatttttcaaaatt-------tggtCAACAAGAGGTCAG-TATGAAAAAGGGGGGGTGGGCGATTTGACTCAGTGGGGCAAgcgcttgcctgacaagcacaaggtcatgattcCTGGAACCCTCCAAAA---------AATATTGTAAAGAAGGATGGTAAAGCAATGATGACATGgtgaattttctaaaattaaagaaatatctaAAA--TTCCACAagagtaatatttaaaaaatcaaaggccATTTTCAAAGTC-CAAAAGCTTACATA-AGTAAA-----GAGCAAAGGAAAGTAACATAGTACTAAAATTCTTGTCATGTTTAGGGGAAAGAT------------AACCTTTGATGTTGATGGAAGAAAATA-GTTAGAAATG-TGGACATAAGcaagttaaatgtattttttgaaagaataaaaacaagatacataatctccaggaaaacaaaattaattttcatttactcAG-------TAGAATAGAGtaggaaaaagattaaataata--aatagaaaatattaa-----acttcaaaaataagtC--AGTATCAGAAAAACT

a score=79183
s chr3           143897736 3791 + 160039680 [encoded data, 4136 characters]
s HiC_scaffold_1 130076172 3836 + 233722169 [encoded data, 4136 characters]

a score=33776
s chr3           143903452 1699 + 160039680 acaaaaCCATCATGCTTCAATGTCCTTCATGCCACTTTGCATAGGTGTTTCTTAGAGACACACAAATATGTAATGGAAAAACCGAGTTCA------------ATGCAGGAAGTGGGAA-AGCAGATGGG-TATGATATAACTACTT-CTTCATCTTG---CCACACCCCAAGTCTCATCAGAGAATAACCAATGCTGA-CAGC--CAGCTTTTCAGAGCATGTCCAC----ATGCTCCATCTACTTTTA--CCCAAC-TAATTGTAT--TACATCACTCCTCTTACTAACATCCTCATCGTACAGAATAtcagagaggctta---aaattcatgcaccaagagagccaattgaatatcaggaagagtactggaatccagattctcctaccccaaatcctaagctctcttctcgttacactacaACATATCCTGTTTACAGAAGAGAACTCAATGTCACTTCATAGTCAGGAATTCTCTTTGGTT------------------------TCCTTCAGACACCAAG---------ATGGTG------------------------------AGA---AAGCAGGTCAATGAC-GTGAGTGATTAAAGGCT--CTAGATT--------------------------------------------------------------------------------------------CTTCTGGGAAATCCAGAATGTTATAGTGGGTTAATAAAGAAGTT-TAACAGTGATGATAACCAAAGAATGCCTGTTACCATCTTACACGACAAACAGGCCAGCAGTT--GTCCCCTTGAGGGGCCTCTATTTGAAGAATTACTTTGATACCACCATGGTCACTGACCCAGGAATTCTTGTTA-------------------CCATGTAT--TCCTAGATATTTATGAGGTCTCCTTGGGATACAGTTGAGGGGGAGA---AGTGTGACATTAAGTGAGTCACATGACATCACACTAACAGTGCTGCATGATGTCATGTA--CAAGTATACCTACT------GGTCTGCTCCACCAGTACAGCCCAGTCACCTGCC--CCACCCTTTTGCTTTCAGTCCATTACATTGAAGCAGATGTTTCACAGCCTCTATTCTTCATTCTAACTCATTCTCAGGTTCCTTCTGTCTAATACACTGCCTGATACTGGAAAGTATAGCTATACACCTCCTTCTCATGTTCCTTCAAGAAATGTAGGTGTAA--GCCACTC-TCTAGCTTCTCGAAGGCTCCATGTCC--ACTTTCCTCCTCTCAAGGCACCTTACAAGGAGAGAAACTTCACTTGTTGACAAGTTTGGCAAAAGGAACATGACACATATGGGAAGGAGTCAGCCTTCCTTCAGAATCCACATTCTGTCTCCACTGTGCCAAAAGCTTGGTGAGAAAATTGGGTGATAAATCTAACTAACATGGAGCATGCTGATTATGTTAGAATGTCTCTGTGGTCATttctccaatcagatctgtctgcaataaaggtgatctattgatctgcatatccatgaccatgtatctgtctttgaaatggttctaaacac-atgccaaaaagagtagtgctatttatggacacactaaaactctaaTGAAAGTGTTTAATAAATGATTGTGAATGAGAGAAATTAATTAGTATATAACATAAGATCTGACCAATGTCCTTCGTAATGGAATATCTTTCACGAAGAATATGATTTTGTCCTGTACTCTGTG----GAACTGTGTCTTGTGGTGAGGAACTCACACACTTGAACTTCACAAGCCTATGT---GAGTTCAGGCATCATGGAACACTCTTACCAGTGGGAATAA-AAGGAGCAGTCCCTGCTCATTAGTGGGTAAACAT--------ATTCAAGCTGCACTCACATCTCCAC--------GTACAGCAGTATTTGATTGACAGCTAAT
s HiC_scaffold_1 130080118 1919 + 233722169 ACACAGGTACAATGCTGGACTGTCCTCCTCACCATCTTATGTGACTGCCTCTTGGGGAAAT-CAacgaaggaaaggaaagattcagTTTGGAAGGAGGCAGGATACAGGGGAAGGAAAGAGCAGAAGATCTGTGTTTCTGCTGCTTATTTTACCTTGTGACTGCACCAAATGTCTCATCAGATAATAACTAATGTTGGGCAACATTATTTTTTCAGAGCATTACCAATTAAATGCT--GTTTAATTTCAAACTCAGTATAAATGTATAAGATATCATTAATCTTGTTAACCTCTTTATTTCATGTAATCTCAGAGA--TTTAGAGAAATACCCAAGACCAGAGAACCAATTTAATAGCAGAAATAGAATTTCAATCTTAATCCTCTGACTTCAAGTCCTA--CACTCTTTCAGTAAGACTACAAAGTCTCAGATTTACAGGAGACAACTGATTGACATTTCGTTGTTAGGTATTCACCCTGATCAAAAAGCAGGCAAGGAGAAAGACGCCCTCAAAAAATCAGGCTGGGTttgatggtgcacacttgtaatctcagcccagcactcaggagactgaggcaggaagatcactgtga---attcaaggccacctaaaCTACATACTAAgactcaaaaaagcaaaaagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcagatcattCCCGAGAGAATTTTTGAAGAACCCAAGGC----CAATGGCTTAATAATTCAGATATAATGATGGTGACAGCCGGGAATTTTCCATTGTTGTCTTAACCCACTAATATGCCAATGTCTCCATCACtttaagaaatcactatttgggCAACgactttaatctcctttttatcATGGCACCTGCAGCTCTCATAGAATGGGCACTGTTCAGGATCCATGCATGTTCTTGGACAAGTATGCAATCCAGCTGGACTGTAGCACAGAGAAAGATACACTGTAGTGCT----GAGTCAAGTAACATCCCCGCAAGATTGATGAGCCCTTCCCACTAGCCAAGCGTGCTCACTCAGGATGGT--GCTC-----GTACCTTCCCCTCACCCGCTTTCTGCCTCCTGGCTTTCACCACTGTACATTATAGCACCTGCTCCAAGATCTGTCCTGATCTTCTGCACTCATTCTTGTATTGCTGTCATCTAACTCACTGCCCCATCCTGGAAAAGGCTCTCATTCCCCTC-TTCTCATGTTGTCACA-GAGACGCACGCACGACTGCAACTCGCCCAACTGCACCCAGGCTTCCTTTCCTAACCGTTTCTCTCTCCTGGCTCCCTAGAAGAAGG---ACTTCACTGGTTTGCAAGTCTGACAGAAGGAACAGGAAACATC---GAGAGAGTCAGCCTACCTTCAGGAATCCCATTCTCTCTCCACTGTGCTGAAATCTTGCTGAGAGAATTGAGCAATAAATTTCACTCA----GAGAGTGCTGATTATGTTAGTAAGTCTATATGGCCATTTCTCCAATCAGCTTTATCAGTAATAAAGTTGATGCTTCGATCTGCATGTCTCTGACCATGCATCTATCTTTGAAATGGTTCTAAACATGAGGCAGGAGAGAGTAGTGTTATTTATTAAGACTCTAAAACCCTAATGAAAGTGCTTAAGAAATGTCTGTAGATGGAAGAAATTAATGAATGTACAACAACATGTCTGATCAGGATTCTTTGAAATGCTACATCTTTCacagagaagat--ttttttttttaaccacatgcTCAGAACTGTACTTTATGGTCAGAAACTTGTAT-CTTGAGTCTCACAAATATATACATGGAATGTACCTCTGTTTAAAAACCCTGAGCAATATGAATCATTAGGGGGAGGCTCTGATGTGTAGTGGG-AAGCATGCTTGGTGACTCCACATACATCTACATCTTTACACTTCAGTGTGTGTCAGCACATGACCTGTAGCTAAT

a score=72185
s chr3           143906188 4020 + 160039680 [encoded data, 4381 characters]
s HiC_scaffold_1 130082211 3952 + 233722169 [encoded data, 4381 characters]

a score=186970
s chr3           143910584 5462 + 160039680 [encoded data, 5840 characters]
s HiC_scaffold_1 130086154 5446 + 233722169 [encoded data, 5840 characters]

a score=14496
s chr3           143918478 360 + 160039680 TCTACAGACTAATCAATTCCTTCTCTTCTCTGTGACAAAGCCTGAGCTTTCTCTGAACTCCTCATAGCAGCTGGAAAGCAAAGAATTAATCTATATTTGATTTAAAATAACAGTATAATTGCTGGTGATAATCATGATAATGAGGGCAGTAACTAAGACAGAAATCCACCTGTGAGTTATTCTAGTTTGCACATGAATTCAAACTAAAAGTCACCTTAGAGGCTTAGCGAAGAGAAATTC-TTCTGGCCGATCTTT-GGAAGATGGCAGCCAGTGTATCCAACCGACTCAACACAAATCTGGGATGATGCAT------GTTTGCAAGGGGGAAAAA---AAATTCC--TTCTTTCCTTCTCCTCTTGACTAGT
s HiC_scaffold_1 130093891 372 + 233722169 TCCAAACACTAACCTTCTCCCCCACTCCCCTCTAACAAATGACAAGTTTGCTCTGGACTCCTCTAAGCAGCGGGGAAGTGAAGAATTAATctatatttgattaaaaataacagtataaTTGCTGATAATAATCATGATAATGagaacagtaacaaaaaaagaa-TCCACCTGTGAGTTCTTTCAATTCACACATGAATTTAAACCACAAGTGACTTCAGAAGCTAAGCACAGAGTAATGCGTTTTGGATATTCTTTAGAAAGAGTGGTGACTGTTAATCTAGGCATCTAGACACAGCTATGGAAAGAGACATGAAGaagtaagaaaggaagaaaaattgagcttcccatttttttttcttacttctaACTGAT

a score=50959
s chr3           143923061 5934 + 160039680 [encoded data, 7057 characters]
s HiC_scaffold_1 130115100 6484 + 233722169 [encoded data, 7057 characters]

a score=85375
s chr3           143931873 4716 + 160039680 [encoded data, 4970 characters]
s HiC_scaffold_1 130123381 4181 + 233722169 [encoded data, 4970 characters]

a score=290578
s chr3           143944345 9850 + 160039680 [encoded data, 10569 characters]
s HiC_scaffold_1 130130185 9549 + 233722169 [encoded data, 10569 characters]

a score=5410
s chr3           143956607 139 + 160039680 ACTCTTCTCTGTGTCTTTCTGCACCAGTGACATCGATGGCCTTGAGGAAACACTGATGGAGAGTTATTATACATACAAGACATGCTTATTAAATTTAGAGCGATTTTAAACTTGGACCATGGTCTCTATCTGCATGACT
s HiC_scaffold_1 130144000 134 + 233722169 ACTGTTTTCTGTATCTTTCTGCACCAGCGACAAACACAACACTGAGAAAATGCTGATGGACA-----CATAGATGCAGTGCATATGGATGAATTTTAGGGTAATTTTAAATTTGTACCACAAACTCTATTTCATTGACT

a score=112388
s chr3           143957179 6784 + 160039680 [encoded data, 7569 characters]
s HiC_scaffold_1 130144360 6683 + 233722169 [encoded data, 7569 characters]

a score=7055
s chr3           143961925 129 + 160039680 ATTCTTCAGTCTTAATAAGTGGGAAAATCCTTCACTTAGACT-TTAAAGTTATGCCATTATCCTCAGAGGTCAAAGGCCTTTTAGAAATATGCAC----ACTTCTGACCTCAAAGAGATTTTATACGTTAAAAA
s HiC_scaffold_1 130148776 134 + 233722169 ATTCTTCAGTCTTAATAATTGGAAGACTCCTTAACTGAGACCAGTAAAGTTGTATTATTACCCTAGGAGGTTAAAGGCCTTTCGGAACTATGCACATTAACTTCTGACCTTAAAGACATTTTACATATGCAAAA

a score=15359
s chr3           143966880 543 + 160039680 TTTCAGCTAATGAAAGCACATTAAAGGTGAAATTGACCATCCATGCATTTGGATCTAGCAAGGAAACGAGGCATTTTTGTTTTCATTTTCATGATTC---TAAGACAACCCA---TTA-TCTTTGGATTCTA------TAGAATCCAGTAAGTTATGCTCATCCTGGATGGTCAAGTACTCTGGGCTCGTTTTTCTAACTCACTCATTCCTTG----TGCTCCCTCTAATTACCATCCACTGTGCATTGTCTAGATACTGGAGATTTGTAGTAAATAAATCCGTAGTCCTTGCTTTCAAGGACAATC--ATAACAGAAATTTAAATAATACAATACAGGGATGACAGTGTAAATAAATCCATTGCAAATTATCGCGGGAGTCCAAATGAAGTGACTGCTAACTGCATAAGGACTCTCTTTGGAAAGCAGGAGCGCTTGAGTAAACAGG-AGAACCAAGCAGACAGAAATCAGGTGCCACAGAAAGGACCTGCGGTATTATGGTC-ATTATTGAAGACAAA-GTGGTTTAAACAAGAGAA-GGAGCATGTGGTTGGACAGAGGGTTA
s HiC_scaffold_1 130152507 537 + 233722169 tttcagctaATCAATGAACATTAAAGAATGATTTCATGATGCATATACTTGTATTTAAAAATTGAGAGAATCACTTTCACCA-AACTTTTACAATTCACCCAAAAGAATTCTGCTTCACTCCTTGGGTTCTAAAGCTTTAGAATCCAGTGAGTCAGCATCAAGCTGGATGGACCGACACTTTAGACTgctttttattactcatttatttatcaaCCATGTCTCCCCTCAGTACTAT------------------GTACTTGAATCTCATAGTAA-TAAAACCATAGTCTTTATACTCAAAGACAGTCTtgtgaaagaaatataaataatacaatacAGAGATGAC--TATAAATAAAGGCATTTCAAAGTGTTGTAAGAGTCCATAGGAAGCAGGTGTTAACTGCATAAGAAATCACTTTGGAATACagtaacatttaaataaaaatacactatTAAGCAGACAGAAATAAGGTGTCAT----AGGATTAGCGGTGTTATAATCAATTCTTGAAGAAAAGCATGATTTATTCAAGAGAAGGGAGGATGTA---AGACAAAAAGTTA

a score=144459
s chr3           143968982 6247 + 160039680 [encoded data, 6949 characters]
s HiC_scaffold_1 130153044 6452 + 233722169 [encoded data, 6949 characters]

a score=314112
s chr3           143976165 11866 + 160039680 [encoded data, 12642 characters]
s HiC_scaffold_1 130159627 10951 + 233722169 [encoded data, 12642 characters]

a score=15988
s chr3           143976836 481 + 160039680 TTCTGTTCTTTGAAAATAAGCCACAAA-AAGAGAGGATTGAACTGTCACTTCCTTTCGTGAAAGAAAGAAAGAAAAACAAAACAAAAGATTTCCTCGCCCAATCTGTGCTCGGTGTTTGCCTGGCCGTGGTTGAGCTAG-TGTCTTCAGCACTGGGTAG-GCGATACAGAACAGGCGGTTTGCCAGGTTCCGTCTAGGCCTCGTGAGCCTAAAGATTTACAGTTTTTAATCTCTTGTTCTGATGGGCATTCTAAATACCTGCTTCGTGTGATGTTTAATTTCTGCACAGCGGGCAGCAGTGTGTCCAGAAACAAGGATAAGCCACCCGTTTCTCTGTGTGATGGAGCACCTAAAACACAGC-ATCCTTTTACTGCATCATTCCCGTTGTCATCT--------CAGCATTGTCTTTTCC-TTTAAAGATGGGGCTTCT-GTTGATTTCCCCTGACCGTTGATAAGATACGTTTC--TGATCTTTATTTCATTATATGT
s HiC_scaffold_1 130160371 486 + 233722169 TTATTTCCTTCAGGAAAAAATCTTAAACGAGAAAAAAGTGAGGTGTCAGTAGCCTTCACACtcgaaagaaa---------aatgaaagattacCTGGTAATATTTATGCTCAGTCTTTGCCTGCCCCAGCTGAagtttgctgtcttcaaaagCAGGAAGTGTGATGCAGGATAGGCTGCTTGCCAGGTTTCGTCTAGGCCTCATGGGCCTGA-GATTtactgtttttaatctttt-ttccaaTGGGCATGTTAAATACCTGTTTCATGCAATGTTTAATTTCAGCACAGCAGGTAACAGTGTATCCAAAAATGGGAATAAGCTGCCTGTCTCCTTGGATGATGAAATGCCTAAAACCCAGCTAGGTACTGACTGCATTTAGTCCTTTCTTAACTCCCTTAACCATCAGTGtctgttccttttaaaaatgttatttttggtCCATTCTCCCTGATTATTTCTGAGGTGATTTTCGGTGGCCCATATTCCTCTCTCTGT

a score=37101
s chr3           143988535 3320 + 160039680 GTGAGATGTGGAAATAATTTTTACTAAAACGGGCCAAATAAGATCTAAAGAAAAACATTGTAGTCTAATGTTC-CAGACTCTTCTATTTATGAGCTTGTCTCTAAAGTATGTTACCAATCTGAGAGCCTGGGGATACTATAGACATG-CCCCACCCCAAACCTAccaacatgcctggcacacagtagtt-cctgataactgtttgatagataggtggatGCAAGCATGACAGGATTCCATTA-GATCCAGCATGATAAAAAGGGGCACTAAACTTGATGCTTGCTTTTGTTGTGTTTCATTGAATTGGGTGCAGTGAGGCTACATC----GTGGGTTTAGCATTTTAGTGAAGGATCTGTGCTTTGGGAAAAC-CTGTAGGCAACCAACCCTTGAG---ACTTATGCCTATCCTGAGACGAAAATGTTGAAGCTTAGCAAAGAATAACTTTCCTTTTTGTTCAGACAGAACTTCTGGCTCTCTTTCTCTCATCCAAGGTCATTCAGTTTCCTCTTTACGGTTTGTGTCTGAGAGGGGAGCGGGTGTTAGGTGTTGGGGAACAAGCCCgtgtatgcatgtggaggccagagaacaattgtggacatcattgcctggaatgtcatctacctcctttgagacagggtgactcattggcctgtggcttaccaattaggctagaatggctatcacaagagcccaagggacctgcaggtccctgcttcccagttctctgattagaagcacatgctaccacacccggTATTGGGGAGGGTTTGTTTTT-GTTTTGCTTTGCTTACT--TTCAAACATTTTATTTAATATTCACACATGTATATGATGTGTTATGAACAAACCCACCCCCATTCCCTCTTTCTCCTACTCCCACCTGTcacaacacacacacacacacacacac---------acacacacacacactcacaACCTTTTCTG----------CATGGAA----AGGA----AAGAAAAGAGAAGAGGAAAAATC--------ACACTCCTTGTGGTTGGGAGGTAGTCTGAAGATCTAGTATGGCTCTACGTAATATTTTCTATTAAAAAAAAGATTctccttctctcccacacctcttttccctttctcctcctctccctccctggctgactctcctctgcccctctccttttTAAGTCAGCAAGATGGTATTCTAAAGAGTCGGGTTACATAAGGTCCCAAAGCCAGTTTAAAGGATAGAGTAAAGTCATTTGTCAAAAC-TATGAATTTGTGATTCATGAGAGGCGAGAGGCAATTTCAGGAGATTGTTTCCCACCAC-TGACATGACTGTCAAAATAAATGCAGGGAAAATAATTGTAGCAATTAACAAAATAGTTAATTTTCCTTTGTCGTGAGATACAGTTCCGTTTGATTTCTGATTAAGAGACGATTCCCACCAAATGCTTTTCCTTCAGAGCGGCTGACCACTGTGCACCTTCCCTCGGGTATATGTCAACATCTTCACTATCGACTCAAACTGGGGGAATGGTTATCAGTATTCAGATGCTCTGACTCAGTCTCTCAGCATTTCC-------CTTTTTATCTACACCCCTCCTAGCTACTCAGCAGAGAACATTTACATCATCTTCTGCT--------------------------------------------------------------------AAAATTATG-CTATGGAAGAGCTCTCAGGACTGTGTTCTGATTGACTTTGGTCCTCCATACGCTGCAGGATACTACAAATAAAGTTTATCTCACAAATAAGTCTTGGGAATTAGCATACCCTCCAACCAAAACTTTTAT-ACCATTCAACTTGTGGAGAAAAGGGTGATGTGTAAGACTAATAAGCTTCAAGATGGGGAGGTACGAATCTGCATATATCTATCTGTCCGTTTGGGGAACTCTTGGCATCGGAGTAGCCCACAGTGAGCACAGCAAGGGCTCAGAATCATTATAAGTAGGGCAGGAGAAAGCACATATACTGAATTTC-TTAGTAATTGAAGTGATTAGATAA-CTTGTTCTTGGATACTCATGTCATTCCTCATTAAGCTGGGCTGCGTTTTTGAACATTTCGTGCCAACTGTACCTTTAAAAAAAAAG-TAAGTGAGAATCTGTAGTGATTAAAGCTTGGCTGAGAGGTAAAAACCCT--GTGGCTGTGGAGGCCCACAACCCCCTAAGGTCCCACAGCAAAACAGGCTG-GCTGGAGTCCACACTTTGCCCCTCCCTCAGGGACCTTGCATTAATTA-TACTAACTCTCTTGATTCCGTTTCTGTTTTCAAGAAATTTGAGGATATTGATAAGATGAACAACAGGTCATTTGCAGCTGCAGTGTTCAGTGACTTCATAACTCTCACTAGTGCAGG-AATTGCCAGAGTGATGTAGGAAAGACAGATAGTGCACTCTGTCTCCTGC-ACAAAGTGTTAAGCGTGTGAAGTAGGAGGATGCACAGACTTTG---GTTTACTTGAGTGAGAGGATAAGGAAAAAAAGAGAAAGAAAGGCGAAAAAAGAAGATTATACCCCCCCCCCGttttttaaagacatgatctcatgcagtccagatcaccttgaatttgctgtagagccaagaatgacctcgaattcccgagcctcctgcctctgcctcctagatgttgggtttacatgtgggtaccactacacctgctttatgcagtactggggatcaaatccatgcggcctgcatgctaggcaagcaatctagcaactaaactgcaaccccaaccccTAAATCAGTTGTTTCTGGAAATTAATCACAAAAACTCAGGGATTTCACACAACAAGCGCTTCTTTTTTTCATAGATTATATCAAACCGACTAGTGGGCTGGCCTAGGCAAGGCTGTCTATCTTAGTGCAGCAGGCTTATTTATATGGATTCAGGTGGTGAATGGGTTAAATATTGAAAACGTAGGATAATGTCTCTCATATACATGG----------CCTCTCAGCTGGGGAGACAAAGATGATCAAGCCATGGGTCTCTGTGAGCTCTCATGATGAACTCTGCTAGCATGGCCTTGCTCCTTT--------AGGCATA--------------------GTCATGTTGAattggccaaagctagtttcaaagccagccctgattctaggagtggggaactaagaggctacacccattagaaggagc-------tcatgcggcaaaggctgtggctgcagagggctgggaagtcatgctgatgg--ttagagttagtctaccacaGTCAGGAGCACTGTCTGAGGGGGCTGTGACACACAGGCAT--GTCTTCAACTGTTGGGATACAACGAGAATCAAGGTCCAATCATTATTTTCAAGAATCCCAGTTTGGAGTAGGGGAAAGAACCAGTCTAGGCTACTTA-------TGTAATAAGCATCGT-ATAATGGAGGTGACAGGGGATCCAGATGCACAGCCATCTCTGCTTAAAAATCCG--GGAAAG
s HiC_scaffold_1 130170723 2947 + 233722169 GTAAGATCTAGAAACTAGTCTTCCCAAAAGGCACAAAATGAGAGCTTTTAATAATATTCCTA--CCAGTGTTCTCACAATATTCTACTTACACAACTGCCTCTGAGGTACTTTATTCTTCTGAGATCATGTGAAGA-GAAAAACATGGATTTGGCCAAAACCTAACAGTATGGCTGGCGCATAGTAGGTGCCTAATAACTATCTGAGGGAT----GACTGCATGCATGA----ATTTCATTATAATTCCGCA------------ACGTTGTACTTGGCGTTCACTGTTCCTCTCCTTCTCACTGGTTGGTGGAACAAGGCCATTTCAGAGGGAGGCTTA---TTAAGGTGAAGCATTTGTGCTCAGGGAAAATGCTGCTGACAGCCAATTCTTCAGCAAAGTTTCATCTATCCAGATGCTAAAAATTTTA-----------TAGTATCTTTCTTTTTAGTCCTGACTGAGTTCATGGCTCT--TTCTCTTACCCAAG--CACT-----------------TTTGTACCTGAA-----------------------GAAACCAAG---------ATAAGGAGATGTCTAAGATAATTTGTAAAACCCA----------------------------AGACAGG------------------------------------AACAGCAGT----AAAGTCAGAAAGATCTGAAGGT----------------TCTGATGGGGATTTCCT--TAGAGGACAAGGTA----AGAGCCTTTATTCTTAGCATTAATGTTCACagtgcctcaga-attttctttcatttcctcaagAGTGG-----GTCTCAAGCATGAAGGCACACCAA----------CAATAATCTAGGCCTGGGCCAAAAGTCACATTTACAGTAATCCTGGGGTTGGAACTCCTTAACCAATCACAATGACTTCTTGAGTTCTGCTCACGGGATTCCAGGATTCTGGAAAACCCTTAGTGTGAAATTCTTAATATGAGACCCCGTGTGATTGGCAGGCAATTCCAAGGCCTGATGTCTCTCCACATAGTTGATCTTTTTGATATGATG------------------------------tttattatcatttctttcc----------------------------ttttaattcacCAAG-TGCttct-------gtgggggaaaaaaaaacctcaaagaaaGCATAAAGGAAAGAGTAAA-TCATTTATCAAATTGTGTGAATTTA--ATTCATAATAAC--AAAGATAATTTGAGGTGATAGTTTTGTACCAAATGATACTGCTGTCAACATAAATGTGAGAAAGATAATCACAGTGATTAACAAAATGGTTCATTTTACTTTGTCATGAGGTAAAGTTCAGTTTGGGTTCTGATTAAGAGATCAAT---ACCAAATGCCTTTCCTTCATAGTTGCTGATGATTATGAATTTAGACTAGGATATGTATCAGTTTCTTAACTACTGACTTGCATTGGAAAAACAATCATCAGCATTCAAATGTTTCAACTATAGCTCTCAGCTCTTTTGTCCCAACCTCCTGTCCATAGCTCCCTTACCTGCCCAGAAAAGACC---TACATTATTTTCTGCTAAACCAAATACAACAGTGTGAGGTCCCAGAATGTATTTCTCAGATGACAGTATTCACTTTCTGgctaaaaaataatgtttcttaaaGAGCAGTCTGGCTTGAGTTCCATTTGGTTTTGATCGCCCATGAATCACATGATCTAGCTAATGAAATTCCTCCAACAAGCAAGCCTCAGGAGTGATCATACCCTCCAAGTCAGTGTTGTATAATCATTTCGCTAGTTGAGGGATTGGTGTTTTCTAAGACTTGTAAGCTTTACGATGAGGGGGCGTGCATTTACACATATCTG---------TTGGGGAACTCTTGGCATCAATATACCCTGCAGT---------AAGGGTCCAAAAACATTATAAATGgggcagaagaaaatatatacactgCATTTCTTTAGTAATTGGAGCAATTAGATAACCTTGTTCTTGGATGCGTATAGCGTTCCTCATTAAGTTTGACTATGTTTATGAATATTT-GTGCCAACTGTACcttaaaaaaacaagataaaggaAAGACTTTAGTG-----AACTTAGTTGAGAGGTAAGAAATGTACATAGCTGTGAAA------AAGTCCTTATGGCTCTCCGATAAA-----CTGAGGTTGAGTCTGCACACCATAACTGGCTAAGTGATTATGGGTAAAATGCTAGCAAATTTCT------------TGTTTTCAAGAAATGTGAAGGTATTT-TTAGGTGGCCAAAGAATC-TTTGAAGATCTAGTACTCAATGAGTTCATGATTTTTATCA-TGTAGATAATT-------TAAAGAAGGGCAAAATAATAGATCATGTTTTACCATACAACAAAATGATAAGCCTTTTAGTCAGCATTATAtgaatcttttgtttgtttatttaggtagaaggaaaaaaataaagatgga--------------------------------------ttTGTAAAAAT-----------CACTGTGAATCAGTTAGCTATTGTCACATAAC---AAATCACACCAAAATTCTGTGGCTCC-------------------------------------------AAACAAAAAATATGTAGTATTG---------TTCATG-AGTTTGC---------------------------------------------AGATCAGTTA------------GATGACAGA-----------------------------------TCCGTAACTCAGATCA-----------------GCTCAGACA---------CTCCCAGTAGGGCCTGCTCATTTATTTGTTTCCAGCTGACGAGTTGACTAAGAGCTGATGGCTTAGGATAGCCTTACTTACATCTGTGGTACTTGGCTATCTATAAATTGCAGAGACAAAGGTGGTCAAGCCTTAAG---------ACTCTCATGATCAAGTACGAAAGACAGGACTTGTTCCTTTCCTTCTTGAAGCTTAAAACTGGCAATGTCACTTTTGCCATGTTGTATTGGTCAGAATAAGTCATAAGGGGAGCCCAGATTCTAAGAGTGATGAAGTGAGATTCT--TCTAACTGCAAAGAGCTGCAAAGTCATGTGAGATAGGCCATGGatgcagggaggaaggaag----gattaTGGCTTTCTATGCAATCAATTATA-TCATAAACAATCTTCTGATGGACTGCTATATGTAGCTATGAGGATATAACTGAT--GATCTAAAGAGAATGCA-GCCCAAGCATC-TTCAGGAAAATTGCAATTTAGAGTAAGAGGTAGAACAAGACACATCTAATAAAACACAGCATAATAAACATCATCACAGAGGAAAGTATACAGAACCTAAATGAGTGCTAACTTCTGCGCAAGGGACTGACGGAAAG

a score=71209
s chr3           143996149 2800 + 160039680 ACACAAAATAATGCATATTATTTGCTTTTACTCCAAGTAACAGCAGCCACTT--TTTTTTAATTACAGGAAAAAACAATACATTTAGAAA-------ACAGATTTTGATAAATTATACAAAATCAGTCTGA-ATGGACCACAGTGTGCAAAAAGTGGCATAGTCTCTAAGAAAGTGCAGAG--AGACCTTGCATTCCTATTATTAATGTCAACAT---CTTTTCTCCTCCTT-CATCTCTACC-CACACCCTGGAGTTGTCTCAGCACAACTGTTGTTAACATGTGTGGCTAGTGGTCTGGAGGCTTCAGCACTGGCAGTGTGGGCCGTTGTAAATGAACTCATACAAAAACAATGGAGAATCTGGCCCTCAGTGTGGGTACTGGGCTTCATTTCCCTGTTGTTGTTTTTCTTGTCTTTAAAGGCAAATTCCTTACCGGTGCAGTAAGACTGGGCCTTCACAAACAGAGCAAGTGTTATTTTAAACCCTGTAATGATAACAGTCTAATCAAACGTGATTGGCTTTTCATAACTTTATTGGCCCTGTCCTTTTGAAAAGTAGCCACGTGAGTGGTTTGCTTTTTATTATTTTTTTAAATGAACAACGAGATAAGTGAT------TGTGCGAGCCAAAACAGACTAATAATGTTTGTTCCTGTGTTCTTTGCTTATGGAACTAAGTTGGCGCATCTTGCCATCACCACTCATTGGCCTGAAACTCCAGCCTTGTGGGTAAAGCCACAGGCAGCATGAGCAGTGTTGCTTCTGC---ACCTTGACACGTACCACCAACCAGTCAGATCAGCTGCACTTTCTTCCGAG---------TACAG---------CTAACACACAT---------------------------ACAAACGCAT--AGTAAAGTGTAACCTGGAGTCTGG---AATTCTGCCCT----CCAGTGTCCGCTGCCTTCCCCGCTCC--TGTGATGGGCAGTGTTCTGGTACAATTGGCTTTGGCAGTCA------GGGCTG--------GGATTCCAATAATAACAGCGTGGTACCCCTTCCTCAATCGTATACTTCTCATACTACAGACCATCAGTAAAAAAGAAACATAAGCAA-------CTCACCCCAGAGCCTTGCAAACTCACAGGGTAGATAGGCTT--CTAAGATACCGAGTTACAGTGATTCCAATTAGAAGTCCCCATTTGCTCGCTGGGTGCTTTCTAGAATTAAGAGGTCTGTGGTGGTATGGTCTCTTCTTAGCTGGGCCATCATTAAGGCATTTGTAAGTTGGAAGACACTTTTGgggacgagggagatgttgttggagtgcttgccc--tacaagcacaaagacctgagcttattctacaaaatccaaagcttagtacagtgtgtgcttgggatcccagcactgggaaagcagaggcaggggcattcctggagatcactgggtagctatcatcttcaaatgggagtttcaagttcagcaacaaagtttatgcaaacaaaacaagACACC-----AGAATTCAAAGA--AGCAAACCAAAGGGGCACTGTTGCCTTCGGGAGCTGCTCTACCCACATTTGGGAAGAATCTATATGCTTATTCTTCAGGTGGATAGTGTATCCATGAAGAAAACCTCAGTCTTTGGATTTAGGTACCTTGTTCTTTACTAACAGTAAACTTTTAACTGCAAGTGTGTACTGTGAATTATAGACAGATAGCCAAGCCACATTCTAAGTC---------------TGGCAGAATTTAGATGACAAAGGCACAGAAAGGTCCTTATTCTCTAAGGTT-------AATCAGTATGGATGAGTACCAGAAAGGGATTTGGG---GGCAAGGAAAGAAAGAGAGCATT-GCTGTCATGGATTCTATCCAGTCACCTACCCCC-CGAACTCCCTAAAAGCCACTTT-ACAAAGGAAAAGGGTGACTAGTAAGTTTATTTATGCTTTTTAAAGAGCACTGCCAATCCTAATTTATCAGTTACTGTCTTGTGACAATTTATTCATTGTTCACTGTTAGAAGGCAGAAGTTACATAGAAGTGCATGATTGGTGA--GCGTCTCTATTTCAATGTGGTATAATAGAGATAACACAG-GCCCCAAAGCTCCGCGGCAGCCTTTTTGTCTGCTGTGTCTCTTTTCATTACTCTATCAGAATCTTCATTTAATATAATCCAAAAAAGCAAGGTAATTGCTTCACTTATCGGTTATCATCGCTCTCGCATACTTATCGTGTCAAAATTATTTATGTGGATAGGCCAGGTTGATCTGGCTGCATTCAGAAGCTTAAAAATTTGAATAACTGTTCTGCCAGTTAGGTTATCAAAATTTCAGCATAAGCAATGAGCCTCTGTTTTCTGGAAGCTGGAGTGAGGGAAAGGGGTAGCCT-CTGCTTGTGCTGATGGGAAGGGAGGGTCCAGGCTTGGGAGGCCCGGGGTTCTAGACATCTGAACTTTCAGTGAGA-AATAAAAGAAATGGCTAAG-AATAGAGAGAGCAACTGGA-CATTCACTGTACACATCTGTGGC------AACAGAAGTGCC--------AACCTGGCCTGCCAGGCCTTGTGCTAGTTTTGCTAAACGCCACAGAATACTGTGTCTGTATGGGTATAGTATACATGATATGA-TATTCACAAATTTGTACACATAGACACACATAGTACATTTGTCTCAGAGTCCTCATATACCCATCCCGTGGAAGATTCTCCCGAGATGG--GTTTCGG-ATGC--TTTTTCAACATTTTAATCGTTTGTCACCTGTC-AGGTATTCTGTCGCTGTAAAGACACATTAGGCTAACATGAAATGTGGCAGGTTCTTAGTCTGGAAGCAAACATTTGTTTCTACAAAATAATGTTTGTTAGATATGTCTGATTTTGAGGCATCTTAAtctctctctgtgtctctgtctctctctctctctct
s HiC_scaffold_1 130175283 2633 + 233722169 ATAAAAGTTAACAAaaatcctttgcatttatttcaagcaACTCCAACAACTTCCTTTTTTAGCATAAGGAAGAAAC--TACATTTTGAAAGACTGAGACAGGTAGCAAATGGTTACATGCGATTAGCTTGTTATGTA------TGTTACAGAAATGAACCAACTGCTAAGCAAATGTAAAACCAGATCCTGCTATGCAGTGGACAGCACCA-CATTCCCCTTGCTCCTCCTTGCATCTCTGCCTCACATCCCTGGATCTTCTCAGCACCGATGCTGTTAACTTGC-TCGCAGGCAGGACAGAGGCTTGAGCTCTGGCAGCACAGGCTGTTGTAAA-GAATTCCTGCAAAG-CAATCAAGGATCTGGCCT--GGTGTAGGCACTGGGCTTCGTTTTCatgttgttgtttttctggtCTTTAAAATCAAATTCTTTACAGATGCAGTAAGACTGGAGCCTGATAAAcagaacaaatttt-tttaaaacaccataaTGATAATAATTTCATCAAATGTGATTTGCTTTTACTAACTTTATTGGccctttcattttgaaaagagGCCATGTGGagggtttgctttttgttttt------aatgagagAAGAGATAAATGATCCTACTTGTAGGAGCAGAAGACTAATAATGACGCTCATTCCCACACTGTTT---CATAGAAC--AGTCAGCCCACACTGCCATAACAACTGACTGGCCTGAAACTCAGCCATCTTGATAAAAGTCAAAGGCAACTTCGGGCCTGGTCTTCCTGCCAAACCTTGTGATATGGTCTCTGCCAGTCAGAGCAATACTAACATTTTACATGGTGCCTGTTTACAAACTCCTTCACCAACACACATTCCTTTCAACATTATCACTCAGATTTCACAGATCCCTGGAGTATAAC-TAACTTAAAATCTAAGTAAACGTTAACCGTAGACCCACATCCAA-GCCCTCTCCTCTACACCATAAAGTGTAGTGTGTTCATTTAACTTGTGTAGGCAGTTATGTTACAGGCAGTCCATGCTGGATtttgtaaagaacaaaatcatattCACTCCTAGATTCTAC-CTTCTCGTAccaccta--------aaaaagaaaatataaacaaacaacaatTCACTATTAAATCT-GCCAACCTGCTGGGTGAACAGATTTTGCTAGGATACTGAGTAGGAATGATTCAAATGAGAAAACTTCATGCACTCAC--------------AGCTAAG----------------GGCCCCTTT--------------------GCATTTTTAGGGGG-----------TTGTGACAACAGAAACACCT----ACTGCTTCCCCCCTCCCAGGACAATA--------TTATT--------TCCAAA--------CAATATACA--------------------AATGTAGAG-CTGGGCCATT--------------------------------ATGAGAGT------------------GTTTGTGAGTTTAAAGCATTTCACTCTGCTGGAATTTAAAGCTCATGAAACCAG----------------------------TTGTCCATATTT------------TATAATCGCCCTTT------------TATC---AAAGACTACCTC----------------------------TACCaaacacaaacttttaaaactaatttaatgATCTGAATTCCAGACAC----TCAAACCACATACTAAATTGAAAGGGCCACAGATTGGTGAAATTTGAGTGATAAAGCCAGAACACTGTCTTGATTCcataaaacagatacaaaatcAAGAAGAATGG---CAAGAAATGGGCCGGGGTAGAGATGGGAATAAAAGGAGACATAAGTTGTAATAAATTCTGCCCACCCACCTACCCCCTCAAGCCCCCTAAAAActgctttgaaaaaagaaaaaagcgaCAAGTAagtttatttatggtttttaaaaagcactgccAATCCCAATTTATCAGTTACTGTCTTGTGACAATTTATTCATTGTTCACTGTTAGAAGCCAGAAGTTACATAGAAATGCATGATTGGTGATAGCTTCTCTATTTCAATATGGTATAATAGAGATAACACAGTGCCCAAAAGCTCTGCAGCCGACTTTTTGTCTGCTTTGTCTCTTTTCATTACTCTATCAGAATCTTCATTTAATATAATCCAAAAAAGCAAGGTAATTGCTTCACTTATCGGTTATCATCGCTCTCGCATACTTATCGTGTCAAAATTATTTATGTGGATAGGCCAGGTTGATCTTGCTGCATTCAGAGGCTT-AAAATTTGAATAACTGTTCTGCCAGTTAGGTTATCAAAATTGCAGCATAAGCAATGAGCTTCTG-TTTCTGGATGTCGGAGTCAGGAAAAGGAATCGTCTCCTAGATGTGCTTGTAGGAATGGGGGGACCAGGCTGGGGTGGCT-----GTCACGACC----AGCTCTTGGCAAAAGGGGAGAAGAAATGgccaagaaatgcagagagaaacTGAAGGATTCATCATGTAGATCTAAGACGAAGTGAAAAGAAATCCAGGCAATTGAACCCTGCCTTTCAGG------GTTATTTTTTC----CTCGACAAGgttct---------------tagcacaaacaatacAATTATTCTGGAA--GGCAAGATGAGCCTCTCAT----CCTTGGTCTC-----CATCATCCCTCCTTCGCCTTTCACATTCTCCATAGATGAATATTTCAGTATGCATTTCTTCTGCTTGTTAATCATTAGTCAATTGTCAAGGCCTTTTGTCACTCTAAAGATGTATTGTGCTAATATGAAATGTGGCAGGTTTTCAGTCtctaagcaaatatttatttctacaaaataaC-TTCGGTAGATAAATCTTGTTTTGAGTTAT-TAagtatctctctttttctctctttctttctctcccttt

a score=46955
s chr3           144001258 3505 + 160039680 GAACTTGAGGTCAGCAGCCATGTCTAT--------------CCATAATGACTGATGACGT--TTCACACATGTGAAATGTAAATAAATAGCTAATGAAAGAGTAGCCTGATTACT---CTACATTATATGACACTTTAGAACCAAACCATCAGCATGGCGTACCTACCCAACATGTACCTCATTCTCTTAACTCTTTTCGCGGTCTATGTTTTCCTCATCACTCTTGACAGGGCTGCTACATAAGCCAAAATTGGAGTCAAGCATGGAGATGGGAGTG-TTAATGAATGCCTATTGAATG---CCAGCTTGAAAGGGGACTTCAGTCCAGC---TTGCTGTTAATGTGACTTTACTCCCTGTTTATTCAGTTATTTGTTTGTTCATCATGGAGGATTTGACCACAGGCCAGGCACTGTGCTGCTCTTAGGATTGAAGGAGAAATAAGATGATTTTTCTGACCCTGAGAG-TTTAAAGCACAGTGATGGAGAAA-AACCGTAGACAA----TTGTATAGTT-ACGTCTAACTTTACTACTTGCTTATCGTGAAACGTTGAACCATTCACATTACCTTCTCAGGAC-TCACCTGCCTCAAATGAACCAATAAGAATGGTCGTATTGAGATAGTGGTCCTGTGATGCAGCTGCCACTGCACAGCAGAGTGTCTGGAAGGTAACAGACATCCAACAGACACTGGGTGTAACTGGACGCACCAAATACTAAGGAAACACAGACGACAGGGAAATTAACTCAACACGTGAGGCGAGAAGGGTCTA-----------AACTTGAGGGGTAGGTGGAGAAATTATAATCTGAAGAAGGTAAGCAGAAGGTTCCAGAAG-----------------------------TGAAAG----CATCAA--TATAAATCCCGGATGCAATCTGAGAGTGAACACAGGCTGGACATGATAAGGGATCTTGGAC---CCCCTTGCACACGAGCACCGCTGAATAGCTCCTCCAGTTCGAATCTATGGCAATTCTTTGTTTTATGCTTTAATTAGCACAAA--ATGTGAACACTCGTTTCACATTATTTAGATTGGCTTTAGAATAGCTTGATTCTA----CTGGAATGACTAGCTATTCCATTTTTAATGGTAAAGAAGCCACCACCATGTTTACCTCATAGGCAAATTTTTAATCTATATGCTTCATCT-TATTAAAGGGGCACTTGATGTCTGAATAAT---------CATTTTGGACAGTTTTCATATTTCT----------AGGAATCTAGATGACAACATACATCTCGACCATAG-GGAACAATGTGCCCCAACC-CAGATGCCTTCATTCAACTACATTAATAACAAAATGTGGATC-----AAAATCCTCGTACATGGAGATGATAGATTAAAATTTACATTGTAAATGTTTTCAATGAAAAG--TGTGTTCTGCTTTGGGTGCTTCCTGTCCTGGTGATGTCACAGATGTGGATCGATTTCCTCTACTCTTCACGTTCACTGCTACTCTAGACCGTCCAGAGCT-ATCCGGGTGGAACTATGCCATATCTACTGCTTTCTCTTTACAGGACAG-TCATTTATTCTCAAACAACCTTTTATTCCATTGTAAAAGTAGGTCCTTCCTTTGGCTTTCCTGCAGTGATCTGGGGTCTGGCCAATTCTCCACGGATCCTCACAAGTTATCAATCTTGGATCCAGATTTACATCAATTATTTTCCTGG-CTGATCC-AAGGTAGAGGTGGTCAAGCCCAATGAACAAAAATGTGTAGTACCTCA--------------------------GTGCTTTCCCCTGGATTGTTATCTTTGCCTTCTTTGATCAGGCATGTCTATATGGTTGGTTATTCTGTTGAGTGATC---------TACACACACATGAAACTGGAAAGAATTTGGGGGAACAATTTAGAATCATCTAAAGCCTGTAACACAGTTAACTCCTAATTGACCCACGAGGAATGTTTAGCAAGGTCTGGGGAGCCTGTATGGAAATTCATCGATTTACAGTTATATTTACAGTATATCTGTTTGTGAAC---------AGTTCT------------GTAGCCCTGTAGAGCAGCACTAGGTCAGCAA--CATCATTTCGTTACTTCAAGCTGATAGCTAGACCATTTAGTTGGCCTCCCATCTGT-----------TGCAAATCTCCATAGAAATGCCAATGCCCACCAGAA----------------------ACAAAAAAAAATGACAATAAAATTT-----------AAACCTTGGGACAAACTATACAAATAAAT----------AAATAATAAAACAAAAAGGAAAAGTGGGGA---GAGAGAACGGGATT------------------------------------------GGCAGGGCAGAACT---TGAGGAGACGCTTGC-------------------------------------AGACAGGAGTCAGGCTGGAATACCTTGTTAGACAAACAC---CAGTATCAGGAACAACCTAAAATATAGGAGCAGGGGAGAGAAAATATAATACAAGTGGGAACTGCTTTCTTCATGCAAGCTCC---------------TACATC---------------------------------------------------------TAGGCTAAG-AAGCCCCTTTTCC-----------------TCTGACTTGATTGGCAGCTGTGGTGCCCCAAGCCTGTTCCTGTTCTAGAAAGAAAAAAC----------------CAGAGTTTGCC-TTTGACAAAGAGCCTGGTGGCTTCTTTTCCATTTAGTATGCTGTCCTCTTTG-ATAAAATAGTCTATTTCATCTCGAAGGTTa-cctgtgccagc-cactacactaataaggtagtcttttgtgcacaaaattagttattattcaa------agattaccaaacattgaagggaaaccaaataaaagagaaaaaaagatgaatgtaaacacagaaacaaatctccatggaaacagctgtaatggagagaattaagaaaacattaaaCTTTAggggctggaaagatggctcaacagtgataacacacactgttcttgcagagaacctgagttcacgtcttggcacttatgttcagtggctagcaaccacctgtaactgcagctgcagtggatccagctccatctctggcctcttcagatgcatgtactcatgcaaatatatacctatatgtgcacacactcacagacacagaCACACACAGAGAGAGACACAATTTAAAAAATAAGCTAAATCTATTTAAATGTTTTAAGATTTTAATTATCCAAGTCAAGAATATATTGTATTTGTTATATGAAAAAGAGTCCCCCATGTTCTCTTAGAAGAATTAAA----TTTACAttaaaagtac----------atatagaacataagttcagagaaccttaaacaaatctgtatataggtagtaggagacaataaataga---aaggaactgaaataagcaaagaaataacaaaagaaaatagagaaaatttcctcccacaggaaaaaaaagaaaactaatctaagaattaacaaat-ccaataaatatcaagtatataaaattattcactaaatgctaaccttggtaaaactttagactactaaacatgaagaaaaatctttaccaaacttttaaggatgaaaaagaacagt-----aactaagtgagaaatgagtaaacagatgaccatcaattacttttagtaataacagggtaccaaggactaaagagccattttaaacatagaattctgtattaactaca-----------atgacagatacaagctattttagagatgaaagaaatcagaaagtttg---ccTGGTATATTTTAATAATACAGAACCATAA-------------CCTCAAACAACCCAAaagacgaggaggaagagaaggaa
s HiC_scaffold_1 130178516 3475 + 233722169 GGAGTTTAAGTCAGGGATCATGTTTCTATACTTTATTACCCCTGCAATGACTGTTCAAGTGCCTTGAACACGTTAAACACAAGTAAACATCTAGGAAAAGGATGAACTGGTTACTTCTCAACAGTATAGGCAGCTTTAGAACCAAGCCGTCAGC-----------------------------TCCCTTCGCTGTTCGTGTGGTC-ATGTTCCCAGCATCACTCTTTATAAGGCGTCTTTGTACCCTGAAATCTAACTGCAGCATGCAGGTGGAAATGACCGAGGAAAACCTGTTCAATGATGCCACCTTTTAAGAGA---TGAGACAAGTAAATTGTCTACACTGAGGCTCAGCTTGCTTTTCACGCAA----------GTTCACTA---------------------------------GCTGCAAGAATTGAGGGGTTAAAAACATACTTTCTCTGCCCTTAAATGATTTGGAGTCTACAGATGGGGAAAGAACCGTAAACAAATAATTATAGAGTTTAAATCTGCATTTGCTGCttgctagctgtgtgaccttgagcaattCATGT-AGCTTCTCAGGACCTCAGCGTGATCAATTGGGTAAATAATGATAATCAGATTGAGGCTGTGCCCTTGTAATGTAGCTGTTGCTCCGTGGTGCAGGGCCTGGTAGG-AAAAGACACTCAACAAACCCTGGTTGTT-CTGAATGTATGTGGCACCCAGGGAACACAGAAGAC--TGAAATTAGTTCAAGATGTGAGGCCAGAAGGGCTTTCCCAAAGTTCTGACTTGCAGGGTGAGTGGAGAATTTGcaagataaagaaggaaaagaaatgaattcCAAAGAATTATTCAATACACAAGGCCAGGAGATATGAAAGATTTCATCAAATTATAAATC----ATTGCATAT-ACATTAATTTCTAGTTGGGAAGCCTAaggaattcctggtgttattctTTCACCTGATCA------------TTCCCCAATTCAAATTTGCAGGG----TCTATTTTCCTTCTTAATTAGAATACATTATATCAGTGCTCATTTGGgtttattt-gatt----------taatttaattttaaattctagaaCAAGACACTG----ATTTTGACTAAT------------------TTTgttatatacacaaaattttaatatacatCCTTCATATATTTTAAGGAAGAAACTGACATCTAAATAATGatgattaaaattttcaattgATATTACACTTCTGTGTTATTTAAAGTATCTCTCTAACAGCATCTAT-TGGGCAAAAGTGGAGAAATGTGGCCAAACTATAGATGCCTTAAATTACCTAGATACCTAACAAGATGTGGCTCCCAATAAAATGGttata-ataaatacaataaattaaaatCCC--------ATATTTTCCATTAAAAGGTTTTATTCACTTCTGGATACTTCGTGTTCTGTTGATACAATATATGAGTACATTTTTCCTCTACTCATTATTGCCATTTCTGTCTAAGACTGTCTAAAACTTATCTGGGTTAAGGTAATCAGTATGCGCCGCTTTTTCTCTACATAAAAGGTCACTCATTCTCAAACAACTTTTTATTGCCTTTTAAAGATAGGTACTTT-GCTGGCTTTTTCCCAGTGATCTGGGGTCCTGCCAATCCTTCGCAGATCTTCAC--GTTATCATTCTTGGCTCTGTGATTAcatcaattatttttcttgtctaatcTTAATGTAGAACTGGTCAG--ctaac--ataaaaatatgtaatgcCCTAAAACGAATTCTAAGCCAGTTCAAACTGGgctttcactttaatt-ttatcATAGCCTTCTTTAGTTAGACACATCACTATAGTT----ACTTCGTTTTGTGATCATGCTCTTCTATACACATATGAATGTGCCAAGAAGTTCAGAGAACAATTTAGAGTCACCCAAAGCCCTTAACACTATTAAATCCTACTTGATCCTTGAAGAATAATTAGCAAGGTCTGGGGAGCTTGTATGGGAATTTACCTA-TGACAGTTA-------GGTCTATCTATTTGTGAACAGCCAGATGAGTTTTAGCCAAATTCAAGTAACCCTTtagaactattttaaaatagctatgtatAGTTTC------------------CTAGTTCAACACATTTTTCTCCCctatattaacttttaaataaaaatttacatataaaaataaataaatccttgaagagatttgaaaaaaaactatttaaaaaggaagacgTAAAGGAAATATTAGCAGAAAAAAAACTTTGATGAAGTCTTAAAAGATAGATGTctggctgggtgtgatggtacacacctgtaaggtgggaggctgagacaggaggattattgcaaatttgagaccaacctgggctacaaagtgagctgaaggccagcctaaactacataacaagaccctgtctcaaaaagacaaaaaacaaaataaagcaaaaaaccaaagaTAGATGTCAGATTATATTATATCGTTAGATATACACTAACAGAGTAATTTATAACTCAGAACACAAG---GGGGAAGGGGGCATGGTGTAGAGGTGAGAATCATTTTCCTTAAAAGGTCTCTGAGTGTCTGAGTATGTACAGCAGAAGAGGCCAAGGGGCAACAATGAGGGTCTGTAACAAGAAGTCCATTCTTGGAAATCAGGCTAAGTATGCCCCTTTCCCCCTCTCTACATAGAGTATCTGACTTATATGGCAGTTGGGCTGCTTCCAGCCTGTTCAtgtgctagaaaaaaaaaaaaaaagccacttatCAGTAGAGTTTGCCTTTTGACACAGAGCCTGAAGGCAGCCCTCCCATTCAGACTGGTG---GCTTTGCGTTAAATGATCTACTTGACCTCAAATGTTACCCCAGGCCAGCTCTCTATA---------------TTTGTgcacaaaa------attaatgaaaaagccAGACTACCAAGCATTGAAGAGAAATCATGTAAAAA----------------------------------CTCTTTAAAA-------------------------------------------------------GCCCaacatgaataa--------------atataaaaactgacCTCAGA------------------------AGAAACCA--TGTTACtata---------------------------------------------------------------------------------------------------aggaagaga--------agagagtaa--TAAAACTGTCTAATTACTATAAA-------------AATTCAAGAATATAGTGTACTT-TAACATAAAAACAAg------attttct-------gaattaaaaatgtaTGCATTAAAACTCAAAAAGCAATGATATATAGCATAACTCCAGAAGATTCTATACCTGTTTGTATGCATGTATCAAGAGAtgatataaataatgaaataactaaaataatcaaagaaataataaaagaaaatagataaatgatTCTTCCACCTGGAAAACAGT---ATTAATCCAAGGACTGGTAAATCCCACCAAATATCAA--CTAAAAAACTATGttctaaatac-------------atttttgtattttgtaaaagaagagaaaagccaaaaaaactttc-------aaaaaagacAGTTATAGTACTGTTAAAGAAATGAGT-ATCAGATTAACATCAAT---TCTTAATA--AATAGgtcactga---------aataattttaaac--agaattttaaattaaattcattgcaaagcttaagaaaaataaaatcatttttacatATGAAAGAAGTCAAGAAAATTGTCTTCTTGactatttttcttacaaaaagTTTTAGGAGAATATATAGTAGTCTagtaatccaaaaaa-aaagaggaagaaaaggaa

a score=228337
s chr3           144006605 6099 + 160039680 [encoded data, 6528 characters]
s HiC_scaffold_1 130182758 6058 + 233722169 [encoded data, 6528 characters]

a score=75239
s chr3           144012993 2245 + 160039680 tccactctaagGGAAGCACAGCTGCCTGCCTGCTAAGGGCATAGGCCAGTTTTCTGCTGCTGTTCTGAGAC--------------------------CCATGTATGGTCAAAGGCAAAGGCACCCCCTTGTTTCTAGGGCTCCTTCCCGCAATGGGCTTTGGAGAGTTGGGTGAGTGGGAGCAGGCTACTCCCGGGGCTCTGCAGGGACTGTGGAAAGGCAAGCCAGTTTGCCAACGGAAGAATAAAATAACTCTTTAATTTTAAAACGCCCAGGGGACTTGCGCTAGGACAGAGACTGAAGGGAAGTGGGGTGGGAAGCTG---TGCTCTTGATGTCTGCCACCTACATATCCCTGGGGAATTAATTGGGAGGGAACTGATCAGAGTGGAG--AAAACAGGTGTTTTCCTTTCCCCAAGGACATTTCTCATTTATTATATGTCTAGTCAAAAGTTTCTTTTTTAGCAGACTTTATCACATACAGATAGA----GGCTGTTTAAAAAAAAAAATACAAGCACCCTGAGCAATTATTTTAAGAGCTGCCCTCGTTGCACATTGTGTGACTGAATACAAATCCTTTATTCTTCCCGGTTTGACGATGAGATGGGGATTTAACCTCTGCTTGCCATCATTATCAGTTCACTGCGCTTCTGAGTACAAACCACAAAGCTCCAGAAAATGTAAGTGGCTGGATGGTTGCCCT------GTTCCCCCCACATCCAAAGCAATCCAAATGCAGAGCTTACTGGGAGCAGAGGGGATCAATAGGAAAGAGTTTCTTCTTACAGCATTCCCCTGGAGTTCTCAGAACTCCATCCACCAGCTCTCTAGTCCCAGTGGCCACACAATTAAGGAGACGGGGGAAAAAAAATGTAGACTTCAGACAATGAAAGAGAATGAGCAAAGGACCGACGGAAATCACAGCCTCTCTCT---CAGCCTCTATTATAAGCTGCATAGCCTAGCTCATCATAGCCTATGTAAAGGCCGTGTTTCCTCAGGTTTCAAATGCCTGATGGTTCAATGAGAAATGTATGTCAAAATGAACCAACAAAAGATCTGTCCCTTCTGTAACCCTGCCTGGCAAAACCTCCAGAATCCCTAGTCCATAGCTCTCTGATTCAAGGGGTCCCTGGGGAGCCTCACATGTGTCCCAAATCACTACCAGTGTCCCCTGCTCCCACCCCGTGCCATTTTCTCTACCATCCCTA--ACTCCC------AGAATGACTCTCCAGATGTTAAATTTTTAAATTTGACATCAGTCTGCTATCCTGATTTTTCCAACCTGACATTGTCTCTTTTAAGAGGCTGACCTTGGCCTAGAGAAGCCCTGCTGGGCCCACATAAAAGAAACCCGTTCTTTCTAGGTGTAGCAAGCATGTTCGTTGGACAGTTAAAGGTTAGCTTTTTGTTCTTAGGATGGTCTTCTCCTCAGGGGGCATGTCACCAACCCCAACCTGACAAATATGAGTTCTTCCTTCTGACCAAAGAGTTTTACTAGCTAATTGTGATGGC----CCAGGTAGATTAGCTCAGATTGGCTGACTATACAGTGGAGGGGCTCTCACATTGAGATCCTCAAAGC------CCAGCAGTGTTagcaatgtatatatacatgaatataggaatatatattctacatatactatatatatatgtgtgtgtgtgtgtgtgtgtgtaaatatatgtgtgtatatatatgtatgtgtgtgtgtgtgtgtgtgtgtgtataaaaTGTATTGATCAAGTGAACCTTTTAATTGGTCAACCATTTGAATTAGGGACATCCTATTTGATACATAGCAAAACAACCGGAACTATACAATAACCAAT------CAGTAAAGTTGATTTCTCCCAAAGAGAAAACACAAAATAAAACAAAAACAAGTTGTAAAAGCCCAAAGGGTT----------TATTGATATAGAATCCTAGATCCCCCTGTACCTATAGTTCCAGTATCTTCAACATTTCTT----------ACTCAGGATCTATATGCT------------CAGGTAAAAGTA----ACATGATCCCCTAGATACAAGGGGGA-AAAGTAGAAAATATAGACTCAGGCTAGGAATATATATATATGCATATATGCATATATTCACTACAATAACCCTACCCTGCCTGGGAAAGAAAAGGTAGTAACACTGAGGAGCTA------TGCTTATCAGAGCACTCCACAGGCCTGTGTCTTAACAAAAGAACTACAAGCAAGAACACGCTATCAACTTGAATCTTGTTATGACATCTTCGTTTGTCGTGCATTTCCCATG---CAGATA---TTTCCCCTGCAGTGCCTACCATCAGTGTAAAGCAAGGC
s HiC_scaffold_1 130189353 2094 + 233722169 TCCATGCTAAAGAAAGCAcagctgcctgcctgccaagGGCACAGGACAGGGTCTGGGTGATGGCCCGAGAAAATTCCCCACACCGCAATGCCAAGGGCCATGTATGGTCAAAAGCAAAGGCAATCCCTAGTTTCCACAGATCTTTCCCACATCAGGCTTTTCCAACTGGGGTGTGTG---------TACTCCCATGGCCCAAGAGAGGCCAGATAAAGGCAAATCCACTTACC----GAGGTGGGGGGGAAtctcttaatattaaaatagccaAGGAATGTGTGTTAGGGTAGAGgctggaggggaggaggggagggggttGCAGTGCCCTTGATGTCTGTCACCTAAATATCGCTGAGGAATTAATTGGGAGG-AATTGA--AGAGTCGAAGAAAAACAGGTGTTTCCTTTTTCCCAAGGGCATCTCTCATTTATTATATATCCAGTCAAAAGTTTCTTTTTGAACAGACTTTATCACACACAGATAGACAGAGGTTGTGTGCAAAA----------GCACCCTGAGCCATCATTTTAAGAGCTGCCCTCATTCTGCATTGTGTGACTGAATACAAATCCTTTATTCTGCCCAGTTTGATGATGAGATAGGGATTTAACCTCTGCTTGCCATCATTATCAGTTCACTGAGTTTCTCAGTATAAACCACAAAGCTCCTAAAAATGTAAGTTACTGCATGTTTGCCCTTGCCCCGTTCCCCCCACATCCAAAGCAATCCAAATACAgagcttacagggaggggagaagatCAATAGAAAAGAGTTTCTTATTACAGTGTGCCCCTGGAGTTCTCAGAACTCCCTCCATGGGATCTCGAGTCCCAGTGGTCATACAATTAAGGGG-----------AAAAAGTGGAGTCCAGACAAGGAAAGAGAATGAGCAGGGGACAGACGCAAAtcacagcatttttttttcctgcctctgTTATAAACTGCATA----------------TGTACGGGCTGGCTGCAGTTCCTCAGGTTTCAAAAGCCTGATGGTTCAATCAGAAACGTGTACCATAATAAAGCAACCAAAGAGCTGTCCCTTATGTAACCCTCACTGGCAAAATCTCAAGAATCCCTAGCTCAGCGCACTCTGTTTTAAGGGGTCCCTAGGGTGTCTCACACATGTCCCAAATCACTGCAAAtgtcctcagct-ccacctcatggcattttctctattttctctgtcaCTCCTGATGAGAGAATGAGTCTCCAGATG--------TTAGCACTGACATCAATGCTCTCGCTAGATATTTCAACCCTGACATTGTCTTTTTTAAGCGTCTGACCTTGGCCTAGAGAAGCTTTCCTGGACCTACATAAAAGAAACCCTTCTTTTTTCAGC----CTAACATATTATTTAGGAAGTTAAAGGCTAGCTATTTATTCTTGGGAAGGTCTTCTCCTTGGAAGAAAAATTATTGACCCCAACCTTGCATCTATGAACTCTTCCCTC---------------ACTAGCTCATTA-GATAACATATCCAGGTA---TGGCCCACATTAGCTAACTATACCATGGAAA---CCTCACTTTGATTAGGTAAAATCATTTTACCAACAATGC------------------TGTATATAGG-------ATCCCACACTGAC--------------------------------------------------------------------------------AGGATTAGCCTCATTGTGGAAACCAGGGCTTTTACTGGACTACCTCT-------------TCCTATCTACt--gtaacaaaacaacacaaac-attGATTAGTGGATCAAATGCAACAGAATTTATTTCtcctaaaaacaaaagcaaaaaacaaacacaacaaaact-------CCCACATGGCTGTTCTCCCAATAGTGACCGGGGATTTTAAAT-TCCCTGCACCCG----TCCACTACTCCCAGCATTTCTTACCCTCTTTGACTCAGCATCCACACACTACTTACACAGCACTAGTAAAAGTCCACTGTGTGATTCCTTAGAGATAAGGGGTAGGGACCTGAAAGTATAGTCCATGGCATGAAAAGT---------------------TTTTCGCTGAAGCAACTCT-----------GAAAGAGCAAGCACAAATGTTGCAGAGATGCAGGCTTCCTTGCAAGAGCACTAAACAGATGGGTGGCCT-ACAGAGGAACCA----TAATAGCACTGTAT---ATTGAACTTCA-------ACCTGCCCttattttgaactttttatgttttagatatgTTGTTCCATTTACTTCTTACTATTAACCTAAAATGAGAC

a score=45603
s chr3           144023474 1411 + 160039680 TTCCTTAATGAGAAACACTGTGA---TCTAGTGAAAAGACATGAGAAAAACAGTCAGAGAATTTGACTTTGTATTCTGGCCCTGTCACCTGTCCAGAAAGATAAAAAAAG-ACAAAACACC-------ACTTGACCCTCAGTTTCCTGACCTTTCCA-----ACATCTACCACCGACT----------------------------------ATTACTGTGGGATTCAGGCA--CTGTTGCAAATGGTATGTATTATATTGAATTATTTTCAGTCTTCATGGTGTGCTCTTTATCGAAGCCTCCATTCACTACCAAAGGGCAAAGAAAACTTTATTCTTAAGTTCCTAAAAGACGGTAGCCTCAA-CAAACTT--CTATAAAGCTCCAGGAATCAAATAGAAAATGAAGGAGAGAAATATACCCAAACTTTAGAATAGAAAACAAATAACCTAAAACAAGGAACAGAGATGACCGAGTCATAGTTGCACCTAAGAACTTTATAGTCCTTGGAGAAAGCATTATGCTCATGACAGGAGGG-AAAGATACTGTACTTTAAGAAAG-CCTTCATTTATCATAAAAATGATGCTGGCTATCCTGCAGACCAGCTGTGTAGCTCTCCAAGGGTGAAAGAGACAGGACAAATTGTGTCCAAGTATCAAGGGAAAGAGGGTCACAACTCTTACAGGGTATCAGTGTAGCCCACAGGGCAGAGACAACAAAGCAACT-CACTTTACGTGCCAGCAAAGCAGAGGTGGGTCCTGTCAGGAGGCAGGATATAGGGAACACTCATATCTCAGTTTTATAATGGATGTACTCTTATACTGGAAAAAACTTCGGTGAATTATGAAAGACATTTATCAGACATTAGAAAGATTCCAGTGTTGAGGGAAAAAAAAAAGCCTTGCCATCGTTTATCAGAGGCTTGAAGCTATTATGTATTTTTCGTTGTGCAAGATGGAGACACACGTG-GGTGAGTGGGTGGGTTTCTGGTTCACCACCAAACTTACACTATTCCTAAGAGTACTTGGATGCAGCCAACTGCCGAATGGTATGTGCT-GGCTGTAGAGCTAGGAAACAAAAATTAGTGGGAAAAAAAAATAA---------GTACTGAAATCCAGCAATGACTTTCATGATACCCATAGTGCTTAGCAGTGCTCAGCATCC---CACTGCAATGATAAA--TAGACTTGAGCATAGCCATGTGAGGGGTGCACC--ATGCGCAACCTAAAGCTCTAGACACTCCATCCTAACCCTATGCACTCAAGCTACCCTGTATGATACTGGCTATCCTGCAGACCAGCTGTGTAGCTCAAGCTAAGTTCACGGGAACTTTCAACTCTTTCTCATTCTGCTTTCCCTTGTCCTGAGCAGCTCTTAACTGTGTCCAATTGATCTCAATACATTTTCTAGCATTGCTAAGTCTGAACCTAGCATAAAGACATAGTGGTTCTCTACATATCAATGTCTTCCT
s HiC_scaffold_1 130198177 1376 + 233722169 TTCATTTATGTAGGTTACCATGAAAGCCTAAGGACAAGGCACGG----AATAGTCAGCAGACTTCAGTTAGAATAGTAGGACTGTCACTTA-CCAGAAGTACAAAAAAGGGACAAAGCACCTAACTTCACTGGGCCAT--ATTTCCTGATCTTTCCCTTTATCCATCT--CACGGTCTCACATAAGCATAAAGGAAATAAGGTCTGATCTTGATAACAGAGGTATCATAACATTCTGCTGCAAGCGTTATACATCAT--TACATTATTT-AAGTCTGCACAATTTG---TTTGTGTAAGCCTCTAGTCAttccttaaagaaaaaagcaacttt-ttaaaaagttactgggAGATAGGAGTTTCAAACAAACTCTACTGTAAAGCCCCAGGAGCCAAGCAGAAAATGAGGGAAGAAAATACACCCAAactttgggaaaggaaa-----------aatcaaagaa-----atgattGTTTAATAGCT---CACAGGAACTTTTTTGTCCTTGGAGGAGGCATTTTGTTCACCATAGCAGGTCAGAGATACTGTACTGTAAGAAAGGACTTCATTTATCATAAAAATGATACTGGGTATCATGCAGACCAGCTGTGAGGCTCTCCAAGGGTGAAAGAGACAGGACAAATTGTGTCCAAGTATCAAGGGAGAAAGGGTCACAGCCCTTCCAGCTCAGCCTGCTAGCCTATCGGGCAGTGACAACAAAACAGCTCCAACTCAAATGCCAGCAAGGTAAAGGTGGGTCACATCAGAAGGCA-TCTACAGGGGG-ATGCATATCTCTGCTTTATAATGGATGTTCTCTTGTACT-CAAAAAGCTTTGGTGAATTATGAAAGACATTTATCAGACATTAGAAAAATTCCAGTGTTG---------AAAAAAACTCACCATCATTTATCAGAGACTTGAAGCTACAATGTATTTTTCATTATGTGATATGGAAACACATGTGCAATGAGTGGGTGGGTTTCTGATTCAACACCAAACCCACACTA-TCCCGCTAGTAATTGGATTCAGCCGAATACAGAACAGCGCACCCCAGGTCATAGAGC----ATCTTACAGCTAG-----AAACAAAATCATTCCAAATGGTGCTTTAGCCCAACGATGATAACTGAAAC-CCCATACCATGTAACC-TAACCTGCATTCTCGCACTATGGTGAGAAACGTAGGCTTGAACACAGCCC--AGGTGGATGCATCTAATGTTCAACCTTAGGCACGACAGACTCCATCTTA--------CACT------------------------------------------TTTCTCTCAATCTAAACTCACTGGGGCTTTTTGCTCTTAATCATTCTGCTTCTCCTTGGCCTGATCAGCCTTTAATTGTATCTAATTGATCTCAATCTGTGCCCTTGAATTTGTAAATAACAGCCTAATTTAGAAATGCAGTGGCTTTCTACTCATCACTGTCTCCTT

a score=68306
s chr3           144025325 1560 + 160039680 ctccctaacccTCACTCTCTTCTGTGAGCTTCCCAACGGCCTCATGAAGAACATCAAGAGACATACTTCTGTTTTCCCCATATATCAGTAAGATGGAAGTAAAAGAATGGCTATA-TCATGTC----------TAACTTCTAGTGAGTATAAACTGACAAGAGAACACAGGTTTTGGGAC--------------CGCCTTAAACTTGACAAAGAACGTGTTGGCTCTTAGGGCTGTGTGACCCTCACAATGTGCACTCCTCTGGTTATCTCATAATTTCCTCTTCAGGAGCTCCTTAAGAACGGCATAAAGACCTATCCAGCTGGAACCATTTACACAAACTGTACGGCCTAGAGGCAGGGGATGGACTTAATGACCCTGGGCTAATCAATTCCTGCTTCCTAACACAAGGAGCGATTGCAAAGTAATGATCCACCGGTCCCAGACAAACATCACAGTTACACAGTAAATGAACTTTCTGATTCCTCATTCCATGATAAATGTATGCTTAATCCTGATTCCTGATCCATCATAAATTGCTCGTCTCTTCGGGGTCACTAAGTGACATTTGACT------------GGGAGTCGAGCAGGAGAGCCTCAGCTGCCGTGGGGGCAGCCTTTGTGGGCATTGTGAGCCTGCGCATCAATCTGCTGCCATCTGTCTTTATTTTGCTAACCCACTCAATCGGACACCATAAATGTTAACAGACATAAAAAATGCTTTTCTTCAACATTAGCCACACGTATCTTCTTGCCTCACCTCCTGAATTTCAGGCAGCCTCTCTGATTATCCCAGGCAATGCCACGATGAACCCACAGCAGCCTGGAGTGGCTCCGAAGAGCAATGCCATATAAGGCATTGTTCCAAACCCACAATCAGAATTTAGATTCCATTTTGAGGCTCTAATGCATCTGTGCTTGGCAGTGCA-TGCTACCCATCTTAAGCAGAAAGATCTAGAATGCAGCCTTCAAGTTTACCCACTGAAAAGGGAGGCACAAGT---------AAAACTTAATCCAATCTCGTCATCTTCTTCAAG-CAAGGTATGATGGAGGCAGCTGAATCCCTTCCTCTGTGCCCCACCATGGAACAGATTAACAAA-AGCAGGTCCCTGTGTGCTCACTCT-ATCTGTCTTAGGAAAAAGGCATCTATTT--ACAACTGAAGTAGTTAGGTTTCAAATAAGAATCTCACCTTCTGATATTTTGAAAGATCTGCCATCACTCTGGGCCAGTGAGAGTCCACTGAAGTTGTTAATTGCCCTGATTTTGCTTTGGCAATTTTTGAAAGGCCAGAAAACAACTTATAGTTTGAAGTTATCTTTGAATTTGGCTGGGACCCTTCATCAGCACTGTAGTGGATACTATAGTATGCTGCCCAGAT----CTTCTATGCCTAAGAAGAAAGTCATCAGCTGCCAGAAAGATTGACCATTTATAGGCTATCCGCTGAATTCCCCAACTAGAAC-TTTCCCTAGAGACCCACCTCACCAAAGGTCGTGGCCTCATCCTGTTAGgatttggatttgtaatgctctccaaaggctcacaggtggaaaggcttagtccccaac-----------------tggtagtgtttgaactgtaggagatag
s HiC_scaffold_1 130199529 1590 + 233722169 CTTTCTACTCATCACTGTCTCCTTTGATCCTCCCCACAGTCTTGTGGAG--TGTCAGAAG---CAGTTTTCATTTCCTCCGGCATGAGAAAAACCTAAGGCAAAGAATGGCTACCCTGATGTCACTGAGGGGTCCACTACTAAGGACTAGAAG-TGATAAGCTAGCCCAGACTTCAGGACTCTGTAGTCCAGTGCTCCTTAAATATGAGCAAGAACTTCTTGGCGCTTAAGCCTGTGAGACCCTCACAATGCGCTCCTC-CGGGACATCTAGTAATTTCCTCTTCAGGAGCTCCTTAAGAACGGCATAAAGGCACATCCAGCTGGAACCATTTACACAAACTGTACAGCCTGGAGGCAGGGGATGGACTTAATGACCCTGGGCTAATCAATTCCTGCTTCCTAACACAAGGAGTGATTGCAAAGTAATGATCCACCAGCCCCAGACAAACATCACAGTTATACATTAAATGAAGTTTCTGATTCCTCATTCCATGATAAATGTATGGTTAATCCTGATTCCTGATCCATCATAAATTGCTCTTCTCTTCAGGGTCACTAAGTGACATTTGACTGTGAGATGTAGAGGAAGTTGAGCTagaaagcctcagctggaatggGCGCAATA-TTGTAGGTATTGTAAGTGTTCGCATTAATCTGCTGCcatctgtctttattttgctaACCCACTCAATCGGACACCATAAATGTTAACAGACAT-AAAAATGCTTCTCTTCAGCTTTAGGCACACATATCTTCTTGCTTCACCTCCCGAATCTCAGGCTGC--CCTTGATGATCGTAAGCAATGCCAGGATGAACTCCTGGCTCCCTGAAGTGGCTCTAAATAGTGAGGCCATAGAAGACATTGTTCCAAGTCCACAACTGGTATTCGGAGTCCATGTCAAGACTCTAGTGCTCCTATACTGGGCAGCAAATTTCTTCCCCTCTTAAACAGAAAGATCCAGAATGCAGCCTGT-AGCTCATCCTCTAAGAATGTGCACTCAAACTGGGTTATAGAAGAATCAGCCAAAGACTTTGTACTCTTCAAATCACATTGTGATGGAGACAACTACATTCCTCGCCCTGTCCCCCACCATCCTACAAATCAAAAAACAGAAGAGCCTTGTGTTCTTACTATGACCTGTTTTATGAAAAAAGTCTTTCTTTTGAAGACTTAAGTAGAAAGTTTCCAAGTAACAGTCT-GCTTtgtaat-ttctcaaaaagctgccATTTCTCTGGGCCATTGAGGATGTTTTGaagtctct-atcaccctgagttTACTCTGGCAATTTCTGAAAGGATTGGCAA-ATGTAAGACTTTTGAATAATCTTATAATTCTGCTGAGACCCTTTATCTGCGCTGCAGTGGGAGCAATGGTGTGCTGCTCAAATCCTCCCTCTGGGCCTAAGATTCATTCTCTCAACTGCCAGAAGAATTGGCCACTTA---ACTTTC--------------ACTAGGACTTTTCTCTAGACAGCCACCTCAGCTAGGGTCAC-ATCACATCCC-------TTAGAGCTCCCAACACTCT-GAGTAGTTTAAGGGTACAAAGGTGTGGACCTTAACCCCAATTCAGGACAAATCGGTAATGCT--AACAGTAAAAGATAG

a score=53131
s chr3           144028273 2010 + 160039680 CTTCATAGTTTGGGAAAACAAATCCTAAAGGGTGAGTCCAAACCTCACGGTTCCTTTCAGTGAAACC--TAAAGGGGGCAAGAATTCCATGATTGAC-AACCCATGAAGTGGCTGGTTTCTCCCTAGTGTTTGGTCCAGTTTTATCTCAGGCATCAGTCCTACTACCAAAGAGTATGAGGTCAGAG-------GTACACATCTCATCTTCCTGCTTCTCTATGCTGGACCT-------TCTTTCTGTCCCCAGAGCTGTCACTCCTGATTTGGCTTTGCGATTCCTAGGCTTGCCTTCCTCAACCTCAAAGAACATTATGTGAAACAAAAATGATTGAAATAGAGACAAATTAAGCTTTGAAACTGTTAAAACATATATCTTCTAAAGTATCTTTAGAAGGAAGCAAACTTGATATGAAGTCAAGATAACTGCCCCAACTCCCACAACTGCCAAGTTCTT--------------GAGTCTAACCCACAATGACTGTCTGTGTGTCTACCTGGTTATCCCATGGGAAGACTCTGTCAATCCAGTGTGGTATGCTTTTTGAAATCATTAGCTACATTACTGCCGTTTCTTCA-TAAAGTGGAAAATACTCAAAATTATCACTT-----TTCACCAAAATACTTACTCTTTGGCAGCCCTA-TAAAGTTACTTCAGTTTTTTTCTAAGTGGTTGCTTATTTATAAAGCCTGTAATTTTAATAGCTGTCCATAATGACAGGGCAAAGTACATAATCTGACACAAATGTTGATCCGGAACCCAGGAGTGTGGCCACAAGAGAGAGAAGACTGAGGTGTGGGGAGGTAAAGCTATAATGGCTTCAGGCTCTCTATTTTTCCAAAGCCTTTTATTGAAAGATTTCTCTCAGTGATGCTGTTTTTGCAATTACATAGCAACAAAGCCATTTGAAATAACTTTTTTGACACTATACGCACAGAAAACTTAAATGGGGGAGAAGGGTTTGCAGAAAGAATCCTTCCAGTAATGTTCTCTGCCAAAATCCTAAGGGTCAACACACAAAACAGAGGACTTGTATTCCCAGAGTCAGTATAGGCACCACCCAGACTGGGAAAGGGCGAGATAAAGAGACTCAAAACTCCAGTCAGC-----------CAGCCAATGAGAGGCTCTTGGGATGATGTAATGCTTGAATCCTGATAGACTTTTGAAAAGACATTGTGGTCAAAGTATTTTTTTAAACCAGATGGAACTGGAATTTTCTCCCACACGAAGAGTCTTCCCTGCCTTCTGTACCATTTTCCTAGGTGGAATTCTTCAAACGGAGTAGGTTTTCTTTTCAAATGTGTGACAAAATGCACTTTGATAACCATGATGTGTATGTGGCTCCTGTAAGTGAAACTGCCCCTTGC---CTATGG-CCCCTTCCACCCTTACTTGGCCATTGCCAAGGACTGAGTGCTTAGCAGAA-AGTTCTAGAAGACCTCATCCCATCTGAGCCAGTT-CTGGTTATCTGT------TCTTCCATTGTTCCCCTCTCCCTGGTCTTCAGA---------GTGGCAGGTGAAGGTGGTGACCAGCACTTTCCACTCCAGTACACTGCACAGTAATAAGGAAAGCCGCTGAAGCCTATGTAGCTACTCATGGTTC-TCACCCTCTTCTACACTGGGACACTGTGAACAAGCAAGCATGCACAGCAGCTATAGCTGAGAGCAAGTCTGGTGAAC----TCAACAAACCCACTGAAGGAAATCCTGACACTCTGGG----------GAGCCTT------------GCACTGATACAG--------AACACTCAGGAGTGATTAGAGAAATGGGCTCTGGACCTCTTGTTTGAAGACACCCTTTTAACTTAAACCT--GGGCTATCAGACTCAGGTTCACAAAATACCATGATGAGAACTACACATC------------------------TCCCACCTGGGCTGAGCATTGAGATCT-TTATAACAACCACTTTTAAATATAAACACATTATTTCTTCTGAAGGAACGAATTCATCATTT-TCACCCCATAAAAATCAAACCTTAAAA----------ATCCTAACGTCAACGTATATGCTTTCCCAAATCGGTTCTATTTCATACCTACTTTTTAAAATA-CCATTAGT
s HiC_scaffold_1 130201595 2016 + 233722169 CTTCATATCTTTGAAAACCAAATTCAGACCAATGAGGTCAAAGCCtatgatttattt--ataagacCAGGAAGGAGAGTAAGCAAATCACATTTAACCAGTCCAAGAAGGAGCT--------CCTGGTTTACTGGCTGGCACGATGATAGCCATGTGTCCTCCCACAAACACTCAGGAGAGCCGAGTGGCTGTGTTCTAATCTTGCATTCCT------------TGGTCCTGTTTAGCTCATTATGCCTCTAGATCTGTGACTCTTGTTCTTGCTTTGCCATACCTGAGGTCATTTGCGTCTATCTCAGGGGACAGTGTGAAGAACAAATATGACTGAAATAAAGAGGGTTTTAACTTATTAATCAA-AAAACATGTATTTCCTGTGAGATcccaagagagaagagaaagtgaTATGAAATCAAGATAACAGCCA-AAGTTTCACAACTGGGAAGCTCTTATGAGTCATTTTATGAGTCTGGCCCATAATTGCTACCTGTGT--CTATCTAGTTCATTCAAG-----------------CATTCAGGGATAAGGAAGGAAG--ATTAACTACATCAATGCCCTTTCCTAAATAAAGTGAGAAATAACCAAATAAATCTGTTAGTATTTCACCAAAACACTTACTTTTTGGTGGTCATGGTACTTTTACTTCAGTTCTT--ATAAATGGTTGCTTACTTATAA-GCCTATAATTTTAATATCCATCCATAATGACAAGGTAAAGCACATAATCTGACATAAATGTTGATCCA-AAGGTAGAAGTGTGGTTATAAGAGAAAGTCGACTGAGGTGTGGGAAGGTAATCATATAATGGCTTGATGTACTCTATGTTTCCAAAAGCTTTTATTGAAGCATTTCTCTCAGTAATGCTGCTTTTGCAATTACATAGCAACAAAG-CATTTGAAATAACTTTTTTGATACTATGAATA---AAAACTTAAACTGAGGTGAGGGGGTTATAGAAAGCAACTTTCTTCCAATACTTTCTGCTTAAATGCTAAATGCTGgtgcaaacaacagaaaaagtaaattcCCAAAGTTAGGATAGATGACGTCTTGGCTGGGGAAAGGTTAAGTAAACAGACC--AGATTCTAGCTGGTCAGGGTCTAAACAGCCAATGAAAGATTCTTTGGATGATATAATGCTTGAATCCCGATATCGTCTTGAAAACAGCTTGGGGTCGAAG--TTTCCAAAAACCAGAC--------------------------CAATTTTCTCTGCCTTCTGCATCATTTGCTTATGTAAGCTTGTTCAAA-----TATACTCTATTTCACAATGTG-GACAATAAACACTTTTGTAATTGT-ATTTGCTTTTGAATCTTATAAATGATACTGCATATTGCTCTCTATGGATTCCATCTGTCTTTCCTTGGCAATCAGATGGGTCTAAGTGCTTAACAGAAGATTTTTGAAAGACACCATGTCATCTCAGTCAATGACTGGCTAAATGTGGGTTGTTTCCACTTATCTCCTTTTCACAGATCTCGAGAGGGAAGGCTGTGACAAATGAAGACAGAGA----CACTTTCAACTC----------TGtagcaaaatggaaaattgttgAGGCCT-TGTGGCAGCTATCACTACACCATCCTCCTTTCCACTAGGACACCGTTGGCG-----------ACAGTG---------------AAGTCTGGTGAACTTCGTCAAGAAACCCGATCAA-GAAATTCTGAAACTCTGAGCACGCTCTAAGAGCCTTCACAGCTCTTGATCACTGACAGAAGGACGGGCAGTACACAGGAGAAGCCATGGGCATGTGCTCTGGACTTTGT-TTTGAGGGTACCCTTTTAACAGAAATCCTGGAGTTATCAG--TTAGGTCcataaaatagaaggaaaatagctAAGAATCTTTAAAGGGTGTCAACTGGCTATTTTCCATCTAGGTTGATAAACATCGTCTCTTATGcaaattaattttagatttaaagaaaatgctttttctgAAAGAACTGACACCTCATTTGCCATGGCATGAAATCCAAACCTTATAATGTTGTGGTTGCCTTAAATTTAACCAATAAGCTCTTCCAAATCTGTTTCATTTGGCATATAC---TAAAAATAGCCATCAGT

a score=4208
s chr3           144039602 197 + 160039680 ATAGTTCAGCTCAAATAGCATTTCTTGAAAAAAGCTGTCACAGATTTCCCAATACAGGTCAACTTCTCCTATTTTTGGCAGCCATAACAGGAAAATATGCAACCATTTACTTAGTT--GACTGATGG-------CTGTCACTCTCATTTCTCTATTCCACTC----TAGCTGT------GGTGCCTACCAGGAGGCCTTGCTTAT-AGAACAGCACT
s HiC_scaffold_1 130205733 216 + 233722169 ACAGTTCAGCTCCACCATCATCACCTCAAGAAAACCTTTATGGATCTCCCAGTCTAGGTCAAGTTCTCCTATCATAGGCCCCCATATCACT-CGATATTCCTTCATCAGACCAACTCCAACTGGTTGTCTTCATCTGTCTCTCCCACATGTCTATCTTATTCACAGTAGCTCTACTCCCAGTGCCTCACACAGAGTCCAGTCCATGAGAACAGCACT

a score=145312
s chr3           144040795 3303 + 160039680 AAGGCTGAATCAATTTCAGTTGCAAGCCATACAAAACCACAGCGAGTTCTCTGA-GTCTACTTGTGGAGCCAGGCACCGAACCGGTAAGACCTCCATTCACACCTGGGCAAAGCTTTGCAGGAGGTTTATGGCCTAGTCCATG----TTTGGCTTTGTGAGCTTTGGTCTTGT-----ATAGATCAGGGATAAAA-TATCTCACCTCTGAGGAAGAAATGAAGCAAGCCACGCAAGACAC-TGCCCAGGTCTGGCACCCAGAGGATGTTCTCTATATGTAAACTGATTTTACTGTTAGGTCACCAGGGAGCGGTGGTAGCTGATTAATGTGAGGTCTTCTCTCCCTCAGCTTTTGCTCTGAGCTCAGG-------ATTCAGTGATGGCCTGCGTTGATTCCATAAGGAGAGGTTGCCTTGAAGATTGT-------TCTCCCCCCTGGGCCCACTTTACCCTGAAACAGCAGCCTGGTCGGGGAGACAGTTTAACGCCATCGCCTTACTTTCTGATAACGGCATTGTTGACATGTCAGCCCTCCATGTCAAAATGTTATGACAACCATAATAAGTAAAATAAATTTAAAACATGTATTGATTT-AAGTGTTACCATTTCTCTCCACGATCAGTGACATAGGATGTCAACTGTGATATATTTGAAGCATATTTTAAGCAAGATAATTAACGAATTGGCTTTAGGAGTTCGGTATTTAACATATTTTATGATGCATCTTAATGAAAACTTCCCCACATGTGGAGACATATCAAGAGAAGCTGCTGCCCATGAGTCTAGTGTACAAAACCAGTAGCATCCTTCCTTGCTGGGTTCTACATCCAC---CATGCCACACCATGAGGTTAGAAGAAAAAGGA-------ATTGTTCAT------AGCACGGTGGTGAAAAAAACAAAAACCAATCATCTTCAGTATTAAAAGAAAAATACTTGG--AAGAGTCATTTCC-TCTTCTTTTATTCCTTCTTCCATCCCATTACCATGTCTCCAATCGTCTCACAAAGGATGCTCTCAGAAGCAAGGATGGAGGCA-GGTCAGGGACAAAACGAGGCTCAACTGAGCCATCTTCTGGGCCTCT-----------TGACACTTTCATAAGCCAACCTTGTGATAGCAACCATCTCAAGGTTAAGGTGATACTGAAGATGAAAGGCCCCATAGCATCCTGCAACAGAGTAGCTACCATTGCCCCATAGCATCCTGCAACAGAGTAGCTACCATTGCCCCATAGCATCCCTGTAACAGAGTAGCTACCATTGCACAAGGATGTGCAGCAGAGAAGGAGAGAAA-GGGGAACAGAGGCTTCACCAGCAATTAGAGATTTCCTGACAGGGCCCATGCTAAACGAGTTATAGAGGCAATTACCCTAAAAATTTTGAAGTGGCCATTTGCTCCGTAACCTAGACCGACCTGACACCCGAACAGAGACTGCCGTAAGCAGGGAATTTATGGTGGCTCGATGTGCATTTAGCATAAATTACCTCGGGGAACAGATTTAAACCACTCGCGTTTTTAAAAATTATGCAACAACAAAAACAACTACAAAATGAGTTTATGCAAACTCAATCCTAGTTGCGGAAAGG-GCCCCTCTAAGTCTTTATCTCCGAAGACATGGCCTTCCTTCTTCCCTGCTTGCTTTCCCCTGCTGGATGAAGATTCACAGCATCAATACATAATAACTGTATCTCACTCCATTACAGGTAGTTCAAGGCCGCTCCGTATAAACGATATGCATGGCTTTGTGTCTTCATCTTTAAAACCACCAAATATCTTGGTTGCAAAGATACGTTAGGTTTAATGCATCCTGTGCCATAAAAGTGCTGTTTAAGACTAATGAGCAAACGAATGTTTGTTTAAACCTCTTTGTGGAAATCAAACAAGCTTTCAACAGCTATTCAAGTATTTACTGTCAGATGTGAATCATCAGTTAGGTGCTCTGCCCTCAACTATTACCAGTTAGTGCTCCTAGTTCCCAGGCACTAATTCACACGCCGTGGCTTTTGTTTGCCCACCCCCCCTCTCCACTCCCCTTTCCTTTTGTCAGTACATCTTCAGAAAGGCTCTATGTGTAAAGTTTCA-------------------GACAACACACAGGTCCAGCCTCGCCGAGTGACTATCTT----AGAGCCACAGCCTAAGGGA----------CTCTGCCAGTATTCTGGGTCACATGTTGAGACCCTCCTCACCAAATGAGTAGC----GGGAAGCACTTGCCCTGCCTCTGCCCCCACCCCCTCCTCACCACATGCCTG-CTTTTTCAGACTCAGCAACACCTGAAAAGCTCCCACAAGATTTACCCATTATATTAAATAACAGGTTTTAGAAGCTGAGGACTGTTATTCTAGAGTTACCGGGTGTCATTAAGGTTGCACGTCTATGCTTGTTTAATTTTTCTTCTGCCATTAAGCAAACTAAATGCTCCAAGGGTTTTTGTTGTTTTGTGTTGGGTTTTTTTTTTTTTCTGTCTCAGTGGGGTCCACCCAGAATAGAAAAGAG--TAAGTATTCCAGGGTTGTGTAACTGAAGAGGGTTTTTTTTGTTGTTGTTGCTTTCATTATGAGGAAGGAATTAAAAAATCCCTTCTAGTCAGTACTTAAAATATCAAAGTCATTGTTTAGTGCCTTTGAGTCACTGTACAACTAATTCAATTGCACAGTGTAGCGCCGTTTCACGGTGTGTGAAACAGACATAGTACATAGAAGTGATTGCAAAGTTGAATAAACACCAAATTAGTTTTTAAAGCCTGCAACTTCCCAGTGGAGTTTTTCAAACTGAATGGCACTGTTGTCTGACAAAGTCAATGGTGGCCAAGAGGTAACATTTGCTT-CTGCT-CTGTGAATATGACAGTGTCTCCTGGTGCTATGGAGTCTGGAGGACAGGCTGTCCTCTGGGAAATAGGTGTGTCGATAATTCAACCTAACCTGCCCATCTGTCACTTAGGAGATTTTGCACCACAACCTG--GACCTCTGTGGGCAAAGGAGGAAGCAGACAGCAAGTAACCGAGAAGCTTATGGCCAAATGAGACGCCCCAGGACAGCCACAAGCAGTTTGATATTCACAAACTATAACAATTTGAGAATTTAAAAGGCAGGGTGAAGTCTCCAGCCCTGCTGCTCCCCTTTC---AGACAGTTCTTAAGTCACTGAGCATCTGTGGGCCTCAGTCTCCAGTTCTGAGCTTATGTGATCGATAA-GGTTATTGACTGGCTCTCAATTA---TGTTCCAGAGACTTGCCCAAATGCTGAAGTTCCACGGACACAACA---AACCAACCAAGTCATCCTATGCCCTCAGTAACA---ATCATTGTCT-ATCATAATCAACCGCAGAAATCCATGGGCAGCAGTCTTACCAA
s HiC_scaffold_1 130207076 3228 + 233722169 AAGCCAAAATCAATTCTAGGTCCAAACCACACATTCGAACAATGG---CTCTGGTGTCTGACAGCAGGGCCAGGCATTTAATTACATAGGTCCCCACTCAAGAC--AGCCTTACTGTGTACTGGATCTATAGCCTTAGACATGCTGCTTGCACTTtgggagcctcagttttctcatctataaatcAGGGATAAAAGTCTTCTGACTTGGAGAAGGAAATTTAGATAATTACATGAAACAAATGCACAGATCTGGCAAACTGAAGACACTccatacattttaattcttactactttttaattCCCTGAGAGAAAAGGTAGCAGATTCATGTGAGGACCTCTTTccctcagtttttgttttgagttcaGACTGCTTTATTCACTGATGACCTGTAT-GACTCCATAAGCAGAGGCTTCCTTGGAGATTTTAGCTCTGTTTCCCCCCTGGGCCCACTTTACCCTGCAACACTAGCACAGACGGGAAGACAGTTTAATGCCATTGCTTTACCTCTTGATAACAACGTTGTTGACATGTCAGCCCTCCATGTCAAAATATTATGACAACcataataagcaaaataaatttaaaatatttattgattttaagtGTTATCATTTACCTCTGCTATCAGTGACATAGGATGTCAAATGTGATAAATTTGAAGTATATTTTAAGCAAGATAATTAATGAAT-GGATTTAGGAGCTGagtatttaacatattttatgaTGTACTTTGATGACAAAT-CCCCATAAGAAGAGACATATCAATCAGAGATCCTGGCCATGAGTCTAATGTACAAACTCAATGACATCTATTCTGCCAGCGTTCCGTGCCCGCATCCATGAC------TGATgagagaagagacagaacaaacccagcattcatttaaaaaaaaagaagaagaagaaaagaaaggaaga--------aaaagtaaaaccagGAGAACTGGCTAATAGTAATTCcagtcttcctttcctcc-----caaGCCTTTTACCATGACTT--GCCTTTCCTCAGTGAAT--------AACTTAGGATGGAGACCTGGCCAGGGAGGAAGC-AGGCTCAACCAGGCCACCCCTGGGGCCCATCAGAGGCTACATCACATTTTTGTGAACCAAGGCTTTACCAGTGAC------AAGCCCCAGGTGCTGCAGAAGATGAAAGGTGACA-GTTACCCTGCAGCAGAGAAG---------------------------------GGCTATCACTACC-----------------------------------ACAATAATGtgag--agaaaaggacagaaaagggGAACAGAGGCGTCAATGACAATTAGAGATTTCCTGACAGGCCCTGTGCTAAACGAGTTATAGAGGCAATTACCCTAAAA-TTTTGAAGTGGCCATTTGCTCAGTAACCTTGCCCGACCTGCCACCAGAGTAGAGATTGCCATAAGCAAGGAATTTATGATGGTAAAATACCAGTTTAGCATAAATTACCTCAGGGAACAGATTTAAACcacttgcattttttaaaagtttgcaaaaacaacaacaac---aaaatgagtTTATGCAAACTCAATAGCAATTGCAAAAAGAAGGCCCTCTAAGTCTTTATCTCCAGAGACATGGCCTTCCTTCTTgcctgtttgttttctctctctggatGAAGATTCACAGCATTAATCCATAATAACTGTATCTCACTCTATTACAGGTAGTTCAAGGCCGCTCAGCATAAACAATATGCATGGCTTCGTGTCCTCATCTTTAAAACCACCGAATATCTTGGTCACAGACGTATGTTAGGTTTAATGCATCCCATGCCAGAAAAGTGCTGTTTAAGACTAATGAACAAACGAATGTTTGTTTAAACCTCTTTGTGAAAATCAAACAAGCTTTCAACAGCTATTCGGGTATTTATCGTCAGATGTGAATCATCACTTAGGTGCTCTGCTCTGAAATATTACCAGCTAATGCTCATAGTTCCCTGACACTAATTCACTTGCTGTGGgttttgtttga-----------gttttgttGCCCCTCATCCTGTCACTATATCTCCAGAAAGGCTTTCTGTGAAGAGCTCCATTTTGTCCTTGGCAGAGCTAACTGCTCTGGGACTCAATCTAGCCAGAATGCTGTCTTCAGAAGGGCC-CAGCTTCAGGGAGGAAGCCAGCCCCTGCC--TGCCTCGGCTTCCACTCTGAGA--CTTCTCA--AAGCCACCAGCACCAGCCAGGCGCCTTCCCTG-TTCtgcccctg-cccctcctcccAAAGTAGCTGTTTTTTTCAGACTCAGCAGCACCTGAAAAGCTCCCACAAGATTTACCCATTATATTAAATAACAGGTTTTAGAAGCTGGGAACTGTTATTCTAGTGTTGCTGGGTGTCATTAAGGTTGCACGTCTAtgcttgtttaatttttcttctgccaTTAAGCAAACTAAATGCTccgagg------------------------tttttttttttctgtctcagtgGGGTCCACCCAGAATAGAAAAGAGAATAAGTGTTCCAGGGTTGTGtaact-----gggttttt-------ttgttgcttTCATTATGAGGAAGGAATT-AAAAATCCCTCCTAGTCAGTACTTAAAATATCAAAGTCATTGTTTAATGCCTTTGAGTCACTGTACAACTAATTCAATTGCACAGTGTAGCGCCGTTTCACGGTGTGTGAAACACAGATAGTATACCGAAGTGATTGCAAAGTTGAATAAACACCAAATTAGTTTTATAAGTCTGCAACTTCCTGTTGGAATCTTTTAAACTGAACGACACTACTGTCTGAAAAAGTCAACAGTGGCCAAAAGGTTGTATTACTTTCCTGCTCCTGTCACTGTGAGAGGGGCCCCTG------TGGGATCTGGAGGAGATGCTGTCCTCTGAGAGGT--GTGCATTGACAACTCCACATAACTTGGCCACCTGTCCCTTAGGAGACATAGCACCACACCACGACAAACTAAATGTCCCAAGGGAGGATCAG--AGAAGGGGACAGAGAGGC-CACATCCAGATGAGACTCTGCA------TTAAAAGCAATTAGATATAGATCAAATATTATGATTTGAGAATTAGAAAGCCCAAGTTGAGACTCCAGGTCTGTTGCTTCCTGATCAGGAGACCATTTTTAAGACACTCGGGGTTTCTGAGCCTCAGTCCCCTTACTTGAGCTTATGTGGGCAATAACAGTTATTAACTGTGTATTGCATATATTATTTCAGTAACTCTTCTAAGAGCCCCAGTTCTGAGGACACGGTATCTAGCAGAACAGGTCAGGACCCATTCTCAGTGATATTTACCATTGGCTGATTGTAAGTAGTCATAGAAATCCATGAAAAACAGTCATAACAA

a score=148456
s chr3           144049260 4595 + 160039680 [encoded data, 4850 characters]
s HiC_scaffold_1 130215451 4365 + 233722169 [encoded data, 4850 characters]

a score=72926
s chr3           144054771 4161 + 160039680 [encoded data, 4599 characters]
s HiC_scaffold_1 130223888 4120 + 233722169 [encoded data, 4599 characters]

a score=50561
s chr3           144061758 1963 + 160039680 AGATGAGTTACAACTGTTGGCAAGAGTCAAATCCACCTGGAATAGTGCTAAAGAGA------------------GAACGAGTCATACCTAAATATCAGCA------TCACCCAGACCATACATATAAACAGATATTTTCTGAAGAACTAAT--TACACCATGTACAGAACTGAGGGTT---------------CCATGCAAAGGAAGAAGAACAGGCACAATGGCTATTTCCCAGTTTCGAGAGATATTTTGTATATGTCCTCAAGTA----TGTTTGAGGTTTTGTCTTTAAAATGGATCTAATAACATTATCCACGGG-GTTATCCCAA---------------CAGTGACCATACT-----CCTTGGTGTGAAAAGACACATAGGGAGAGGGAAGATG-GATTAAGAGCAATGGAATCCTTCAGAATAACCTGGACACCAACCTCTCCCCCTGACAAAGAAAAGCTTTAAAAAAAATTATAAGGCTCAAGCAGGCCATCGTTCTAGCTTGTCTCATTTCAGTCATCTTAATATCTTAGCAGGTAGTCATTGTATTTGGTAGAAAAAAATTAAAGAAAGAAATGAATGAAACACTGGGTCCTACATAAATGAGGACTACTTTGTTGCTCTGCCCA--------------------GGAGCCA---------TCTATGCTCATGGAAGCTGAACTCCAGCTTGCCTCTCTCCTCTGCCTCCTGCAGGGCATGTTTTA---GGTCTAGTGGGTTGAGTTCCGGAATCTCTGATATTGAGGAGAAAAGCTAGCC-ATTTCCTCATGCCAGAATTTTTCTGAGCTGATGGTCCCCGCAAAGATTT-TGTTTCTCGACTAAAAGATAATTGACCAGAATCTTTACGTCAATCAGGAAAGATTAAAGCATGGTGTTATTTGGGCTATAATCATCGCCTTTATTTTTTATTTTATTTGGTGGCTAAATAGTCACTCTTGAAACCAGCCTGTTCTGCATGTTAAATATCAACCTAAGTCCAAAATATTCCACCAGATGGTTTCTTATTAAAACTCAATAAAAGCGAACAGAAGGAAAATCC-CGGCACAGGAGGAGCCAAATCACCCAAAGATGCTCAAACTCAGACCTCTTCTGAGACTCATTATCACAGCAGAGCAT---CTCAGCAACTTCAAGCCCCTCCTGAGATGACACGGGCAGACAGGGAAAGTCTATGCGTTTTCCTT--ATATTTCTGTTGAAGCTATAGCTATATATTTCCCCCTTTTCTAAATCAAGTGCTACCACCTTTCTCTCTGTGGCT------TCAAATCTGT------TCTCCTCAACTCACTTGTCCTCCAGTCCCAAATAACGTCAAGCTTCTTCGCCGTCTCCACTGCTTCTAGTGACATAcatagcacaatagagatagcaagagttgagtttgggggatacctgtctttgaagtataatgctgctcc---ttaagttggggacctagaacaagtccttcaaagtcactgagacctctgtGGTTTCGTTTCAGTGATGAAACACTTGGCATGGATGATATTGAACACTTAAGATTATGTACCAACATCTTCCA-TAACATAGCAATATTCACCAGCTCCCAAAATGAAGGAAAGGTACCAAAGTTGTTTCATAGTATAAAAAAAAAAAAAAAAACCCTACTTTTTCATGATCATAGATCATTTTCAAAAAGCTGCTgcatgctaattatatcatctagcaaa-caaaaggtcaagagattgtttcattcttggcatgattagggaaatataggattatatatgctaattaaaatttcagagaaatgcaggtagggcaagcctaag-taggataatgtgaagaaaatctagtccatatatcaggtgaaggtggggaaataa-aggaaataaagaatcaagaaggaagtggggaggacataaagcaa--aataacaaagaaacccgcgggtgtcagctctaaaaataaatgtaaatagatttaaa----------------------------------------------------------gtcttcattaaaatatcaaggctc-caaattttgtcaagaaacaaaattcatctacaaactgAATTTTAAAATTACACATATGAATTAAAAAT
s HiC_scaffold_1 130230203 2026 + 233722169 AAATGAACTACAGCCACTGACCGTTGCCCAGTGCAGCTAAAGTCATACTGCAAAGGCTACCGGCAGTCAACAAGGAAGAGGTCACATTTGAA----AGCACGATTTTCACCCAGACCATCTCAGTCAGGGAATATTTACCAAAGAACCAATGGTACTGTGTGTACAAGACTAAAGGTTACGTAGGCACATGGGCCACGTGAacccgcaagtcaatgcacacgAGGCATGCATCAATTTAGAGAGA------GCA-GTGATCCTGAGTAACCCTTTTTTAAGTGTTATCTTTAAGATGAGGCTAATAGCACTGTCTACAGAAGTTGTGACAATTATTTAATTATAGTCCATAACCACACTGAATTCCTTGACAGAAAGAGGCATGCAGTGAAAGGGGAGAGACGGATAGGGACGACGCAATCTTTGAAAACA-CCTGGA----AGCCTTGCCAC---------AAAAGCTTCAGAAAG---TATAAATCTCAA------------------TCTTCCTGTTTCAATAAT---------TCAGCAGGtagttactatttt------aaaaaacgCAATG---GAAACTAGCGATTACCTGGATCTCACATAAATGAGTGCCTCTTTGGTGTTCTTCCCACAGGGTCTTATGAAGACACAGGGACCAGCCAGGGTATCCACATTCATGGAAGCTGAACTACAGCT--CCATGCTCCTCACCCTCCCCCAGGGTACATTTTATTAAGTCTACCATTCTTACTTTGAAAATCCTGGCGTATGGGAAGAAAAGCTGGCCTCTCTCCTCATGCCAGAGCTTTTCTAAGTTGATATCCTTCCCAAAAATTTATGTTTCTGGACTACAAGATAATTTACCAGCTTCTTTATGTCAATCAAAATCCATTAAAATGTGATGCTATTTGGATTACAGTGAACtccattattttctcttttattcggAGGCTGGGAGTTCAGTGTTGAAACCAGTCTGTTCTGCATGTTACACATCAACGTAAGTCCAAAATATTTCACCAGATGGCTTCTTATTACAATTCAATCAAAGGGAACAGAAGGAAAATCCAAAGCACAGAAGCAGCCAAATACCCCAAAGAGACCC-AACTAAGTCTTCTT-TAAGACTTATTATCACATCAGAACATTGCTTTACCAAGTGCAAACCCCTTCGGAGGTGACAGAGGCAGGCAGGGAAAGCT--TGCATTTTAGTTGGATATCTCCATGGAAGTCAACACTAT-------CTCCTATTCTCCATTAAACacttc--ctttctcctctgttgTTCTTTTCTCTAAGCTTTGGAGCACTCCCTCTACACATTTCTCC-CTAGCCCTGTGTAACTTCAAGGATGTTCACAGGCACAACTGCTAGTGGT-ACAAATATAGGATAGCAGACAGAACACAGGGTTTGTGATTAAGAAACCTGTGTTCTAGGTCTGACACTGCTACCAATTAGTTTAGGAACCTAGAGCGAATCTTTTAAA-----------TGCTATGATTTTGTTACTGTAATG---CATTTAGACTGGGTGATGTTGAAGATCTAAAATTCCATGATAGCATCTTCTATTATTTTAACTGTAAAAAGTAGTTCCTAAAACTAAATGAAGATTTCAGACCTGTCCTATGGtaaacatacaaaaacaaaa---ttattttttcatgaacaTAGATAATAAGAAAATGTTTGCTGCATGCTAATTTCATCATCTACCAAAGTAAAAGGTCAAGAGATTGTTGCATTCTTGGAATGATTAGAGAAATATAGGACTATCTATGTTAATTAAAATTTCAG------GCAAGCACTCCAATCATAAGTTAAAAAGGTCCAGAGACACTCTAG----TGTATTACAAGGAAATAGTGAAACAGCAgttgacagagagacagacagacagagcagaGGCAAAGACACAAACAGTAACAA--------------GTCTGctgggaaaataaatataaatagattACAATatggatcgaactcaggaccctgcgcttgtcaggcaggagcttgtgccactgcGCTTGATCTTTATTAAAAGATCAAGGTTCTCAAATTGGGTTAAGAAA-AATATCCAGCTATATgctaca-ttaaaaattatagctataaatttaaaat

a score=70045
s chr3           144064847 4329 + 160039680 [encoded data, 4560 characters]
s HiC_scaffold_1 130242059 3904 + 233722169 [encoded data, 4560 characters]

a score=21281
s chr3           144069940 720 + 160039680 AGCCTCCCAAGATGTGAGCATGTCC--CAAGAGTGGAAAACCCCAGCCTGTCTCTAGAACGAGAGCTAGCTGACTGC--AAGAGAAACTGCAGTAAATACCTCTGCCTAAGTTGGATCAGAGCGCAGCCTCTATGAAGTTTAGTTCCAACTTTAGACCCAACTCGGTCAGCGTGAATCCCCACAAATTAACTCCCAGGGCAAACACGACTGTTAGAGGAGAAAATGGAAATAGCAGCCAAGCAGCTGGGCCTGTCAGTCTGGTGGTTGCAGAAGGACTCTCTGAGGCTGAGGAGGAATATAA-AGAGTGAGGGGAAGCCTGGGCAGCAGGCACAGAGGCTCCTGCTTGCCATCAGACCACAAGCCCCTCTGTAGAAGTCCAGGCTTTGCCTAGTATACGGAACACAGCTTACAAAAGGAAACTGTT--GTTTGGCAGGTGGGACGACATTTCAATTGTGATCGTCACTTGCTTACTCAAACAG-------------------TTTCACAAAGAATTGTTATCACTATCTGAATCTATGTTGCTTCAAAAACAAACATCTTTCTCTCCGTATCAGAAGCAGGGGGTTCTATCCCTCTGAGAAGCGATGTTCTGTAGCAGACCTGTGAGGAACTTGCAAAGTA-TGAAAGGATTAGACAACCTTCAGAATAAACTGTCTGGAAAGGTTGTCTTCTGACCTCCAGCGACTATGATAATTTCCTATATTAAAATGCTCATTTATTAAACAG
s HiC_scaffold_1 130245993 719 + 233722169 AGCTTCCTAAGATCT---CATGCCCGCCTTCAGTGGGACTCCTAGGT---TCTCTCCTACATGACCTGTCGAACTGACAAAAAGAAGCTGCAATAAATAGTCCTAGTCTACCTGGGCTTCTTCACAGCTTCTATCAATTTTTGCTTTGACTCCAAGCCCCATTCACCTGGAGTGAATCTGTACAAACTAACTCCCAGGGAAAACAGCTCTA----AGGAGAGAACTGACGCTTTGGCTTGGCAGCTAGGCCTG-CAGTCTGGTTTTTACAAAGTGACTGTCCCGTGCTAAGGTGGAACATAATGGAGTGAAGTGAGCTCCTGGTGACCTGCACAGAGGCTCACACCAGCC----GACCACA---------GCACAATTCTTCACCAC-CCTACTGTCTAGAACAGGGCTGACAAAAGAAGACTGTTTTGTTTGGCAGATGGGAAATCAtttcaattgtgttatttttctatttactaAAGTAAATATAAAGATGCTTTTATTCTCCACAAAGGATTGTTATCTGTATTTGAATCTATGTTGTTTCACAAACCATCACCTTACTTTTAGTACCAGAAGCAGAGAGTTCTGTTCCTCAGAGAAATGATATTCTTTGGTAAACTGGTGGGAAACCTGGAAAATGCTGAAAGGATAAGACAATTTCCAGTACCAAC---ACAGAATCTTTGTCTTCAGCCCTCTAATGACTTTGATTGTTTCCTATGATAAGACAGGTATTTAAAAGGCAG

a score=83056
s chr3           144071629 3245 + 160039680 CTCAAATACACATAAGCAAACACAGGTATATCTTTAAAGTGTTATCAATAAATATGTTTTTCTAACTGCTTCAGTTGTCATCTTTTTATGTCACTGTCTGAGTCATCTTAATTAATATCCTCCTCCAGACAAGGAGTTGTTGAT-TATGCATACACAGATTACCCACTGTGCCatcctcagaacactgagggagatacccacctgtgtcttcattttacagtgaaggactctgg--agcttggggaatttgggtttaagtttgaccaaactgttgttcagctaggg------tgggagtgttcatctcaga--ctgcctct-gtagcctgtgctctaaaccaGAGTA--CTTCTGCTTTGCTCTGTCTTATCAAACTGTGGGCTCCTGAGGGACCATGGAGAGTAGAGCCATATGCAGACTTGGTTCTAACGGAAGCTATAACCATGACATACTTCATGTGTGTCCTGCCCACTACTGTGAAGCTATTTCTTGGGGCATATTTTTTCCTGGATTTGAATAACAACAATCATGATGATGTTCAGTCAGGGAAACTCTACCTTCTCT----AAAAAATCAGAAAT--AAAC-------------------AGAACCCTTAAGAAACTTCAGCC---TAGCTTCCCTCTTTGCCCTTTCTCCCTGCCCCCTCAGCGTGCAGGTTTCTCCCG-ACACTATGGCCAACTTTGCTTCTTGTTTTCCCTCTACAGAGGCAGGAATCTTCTTTTCTCTCTGGGAAGCATTCCCTTGATAGGAGTTACACGCATGTATCAATGGAGGAATAAATGTCCCACGGTTGAAATCCAGTTATAAACTCCTCATCTGCAGATTGTACAACTCAGCAGTAAGAATTTTCTCTCTGCAGAAAACCGGGGCATAATCAAGTCTTTCAATGAAGGGCAGAAAAGGGAAATCAGAGAAAATCAATTCCA----TATTTTTTAGGTGTGGAATGCAGATAAAGGAAACGTTCTCACAACATTTTTGTGGGTAGAAAG-------CATTTTTTTTTTCCTCCTCTTTAAGGCTGAGACTTTTT--TCAGTGCATGCTGTGACCTTACGCTGTCATTCCGTGGGCTAACTTGGATCCTCCCCCAAGTGGCTGCA-TCATAGACTATGTCACTGGTAGAAAGTTTTTCAGGCACAAGGACGAAGGAGATCACCAGCACAGAGCTCCGCTCCTCGGACGCCTGGCATCACcaagtcctctaat-ccccttcccagtctgtcccctcatctatacactggagctaacaattctgcccttaaaagattgttctaagttctaaataagaatacagagaactcaaa-tgtctcacagaaagt-ctcagcaaaCTAGAGAAGCTGGCAGAGGCAACGATCCTTATTCGTATCA--CCTGAAGTACTGTTTTGCACAACTGATTTAATTATTTTGAATTCTAGAATGATAGCAAACTTTATCAGAGATGGGAACTCACAGTGGCAAGATGAGACCATGTTCTGAGACACAGTGAAGGACCGCCAAGTCCCAGCAGCCTAGCGCAATACGGTCTTATTTGACATCAGTCTCAAACCAAGGGCAGTTGTTCCTGCACAGATACTATTATG----------GTCTTCCATAACCCATGTATTGTTACTTTTCCTCC-------------TTCAaggtggaacctttaagaagcaatcaagtcacaagggtagagccct----------------------------------------------------------------------------------------------------tgtgTGACTtcttctaagcaaagaacatccttcaccagataataaatctcatgacaccttga---------------ctctcagcatcagaactgtggaaa------------ataaattaa--------tggcattt-----cattagcagcccaaatagtccacgacaAACACACCCCAATAGCCCTTTTCTGAGTTGTGACTTGGGTGTCTAAGCTTCTGCCACCAAGAGCTCCTACCATCTTCTTCATGTCCCAGAATCATTGGCTTCCAAGTATCCAAATGAGAAGACCAAAATAGAAGTCCATATGGGGTATTTAAAGGCCACATCCAGGTATTCATCACTCGGCTGCTTGGCCCCAAGAAGCCTGAATGGACTGAG-AAATTCAGTTCGATATGTGCCT-------------TTCACACTGACAGTAACGCTGAGAAGAATGG-AGACGCCAACCATTCTACTCACTACTTTGAAAGAAGCAGGACTCATTTAGGGGAGGGAGGGTGCGTGGGCCAAAGGAAAAACGAGACCAGTCACTGGTTTATTAAAGACATTTAAATAGAAAACAACCCTCGGGTGACATGAGGCAAAATTATGCGGAGAAAAAAGTTTTGAT-------GCTTCTCCACTCCTCTCTCCTCTGCTCTCCTTTTTTAATCAGTGCCTTCGGCTGCCGTCTGGACTCCCAGAACCCCAGCATAGGGCCCCCAAGCACCCCAGCCCCTCATAGAACCGCTTCATATTTCAGACAATGATGTCCATTAAAAGAtgccttatttcctcagagccatattgtctgatagatgacagctaattaatctgataaagtaattcatgcagctcaaataatagttattgtgggaat--tgttactaggcccatgtaacctgtatttttaataggttgcttctagagacaatgccttaacctaaataaatTGCTCCAAAGGTAAGGACTGCATAAACGGTGAGAACCACGGTCCTCACA-GCACGCTTGACAAGGACATAAGTGTCGCAGGCTCAGCTCTGATAGAGACAGTGAGAACCTTCACTTCGTTCTTC-TTACCAAACATCTGCAATAATTGAGGCAGAGGCTTCTGTGTGTCTAAAATATTTTGATA-TGAGGTTGGAGCACGTACCCAGAACAGGTTCTTGGAGAAGCATTGCCTACTTAGCAAAGAGTGTTCTA-----TTGCTGCATGAGATTCCTGGTATCGATTGATTTCCTTCCTAAATATGGAAATCCCGTTCACGTGAAGAGCAATAAAACAAAATGACTCCATAGGGGTCATTGTAACGCTTCTAATTGTGTTCGTGAATTAAAATCCCTCATTGCCTACTGATTCAGAAGAGTCACGTTTGCCCT-----------GCTTCCTTCTGAAGAAAGGATGCTGTGGCTTGGGGTTTCGTTTAGAGTTTTATTTGGGGACTTTTACAAAAGCATAGGATTTTGCAGTGGATGGCACAGGAGTATCCCCGGAC-CACTTGGCATGAGTT---GTTTCCCTGGGGGACGCTTCATAAAGAAGCAGTATCTGAGCTCTGCATCCCGAGTATAAGATACAGGGTTGTCCTTTATGCTGTCTGTCATGAGATAGATAGAACACACCC---GTCTTCTGTGAAACAATGATGACCCAGAGAAGATCCGTTCCTCTGAGAAATCAGGA
s HiC_scaffold_1 130247089 3293 + 233722169 CTCAAATTTGTAAAAACTAAGACAACCATATAATAAAACA--TATCAGAAAATATGTCTTTATTATTGCTTCTTGtgtctccttttt-tgt----gtgtaaatCAACATCATCATCGTTAACTTCAAAACAAATGACATCTAATGTGTGCTCCTAAGTATTACCC--TGCGTTGTTCTCAGAGTA-------AAATATTC----------CTATCTTA---TGAAGGAATACAATAAACTTAGGAAGTTTAGGTCATATCTGAACTAATGTGTATCTTAGTTAAGAGCAGCTCTGTAATTCTTACCCCAAATTCTGCCTCCCAAAGCCTGCACTCTGAACCACAACATGCTTCT-CTTTGCCCCATCTT-TCAGACTGGGAAGTCCTGGGGTACCTTCTAGGAAAGTACCATATGCAGATTTTGTAATAATAAAGGCGATGATCATGGTATCTTTCATGTG---CATGCCTAC------GAAGCCCCTTCCATATGCAT-TCTCTTGCTGAATTTGAATGACAACAATCATGATAGTGATCAGTCAGGCCAAA-CTGccttctctgtttaaaaaaagaaaacttgaaactCAGCATTCCCTACCCCCAAGAACAACCAATAAACTCCATCCATTtagctttccttttt-cctttcccccctcTGCCTTCAGGGTACATATTTCTACCACACGTTGTGTCCACCTCTTTTCCTTGTTTTGCCTGGATAGAAACCGAA--TGTTTTTCCTCTAAGAAAAGCACTCCCCTGATGGGATTTGCACACATGTATCAATGGAGGAATCAATGTCCCACGGTTGAAACTTAGTTATAACCTTCTCATCTGCAGAATGTATAACTCAGCAGTAAGAATTTTCTCTCTGCAGAAAACTGGGGCATAATCAAGGCTTTCAATGGAGGGCAGAAAAGGGAAATCGCGGAAAATcaattccacttttttttttttggtgtggaaTGGAGATAAAGGAAATGTTCTCTCAAC-TCTTTGTGGGCAGAGAGATAtgataatttctttctctctcc------aagCTCAGAATTTTTCCTCAGTTTGTGGTGTGACCTTGCCATGTAGTTCCAGG-----ACCTCGTCCTATAACCATAAGGATGGAGTCACA--------CATTGGAAGAGAATTC----GGTGTGAATTCGGTGTGAATCATTAGCATCAGCCTTTATCATT-------------TCAGTGAGTTCTGTAACAAACTTTCTAAATCCATTTCCTTAATTGTAAAAGGAAGAT-ATAAATCTA-CCTCAAAAGATTGTTGTGAGGGCTAAATAAGAACGCAAAGCATTTAAAGTATTTGATAAAATGTCCTTAGCAAAGTAGAGCTGCCTATGTATACATCT-TTTTTTTACAAATCATTTTTAAGGTCCTGTTTTGCACAAAAGATGTAAGTATCCTGTTATCTAGA--GACAACACACATCAACATAGATGGCTAGTTACAGTAGCAAAGACAAATAATATTCTGTGGCATAATAAAAGGCCCTCAGATCTCAGCGACTTAGCACAATACAATTTTGTTGCTCATTAATGCCAGTCTCGAGATGGGTGTTTCTGGTCAGACATTTTTAGGTTTTGAATGTGTCcctcaaaattcatgtgttgaaactTGATAGTCAAGGTAATAGGATTAAGAGGTAAGACCTCAAAAATGTGATCAAGTCACAAGAGTAGAGCCCCATGGATGGGATTAGGGTGCTTACAAAAGAGTTTGAGATGTAGAGTCCTGTCATCTTCACTGTGGGGGGGCACAGTTGGTCCACTCCAGAGGACGCAGTGATAGGTGCCACCCTGGAAGCAGATGGCTGCCCTCACCAGACACTAAACCTGCTGGTACCTTGACCTTGAACTCTTGCCCTCCAGGCTTGAGAAc----gaaatttctgttctttataagtGAACTGGCCCTCAGTAtttagtagtagtagtagcacaaata----aagacaaa----------------ttttgCAAGTAGTGACACAGGCATTCAGCCTTCTATCAACA--GGCTTCGTCCAGCTTCCTTGCGTCTTACAGTCACGAGCTTCTAGCCATTC------------------GGAAGTcgccatgaaatatttaatggCC------------------CTCAGTTGCTGGACCCCAGTAAAACACAGAAGCTTGTGCAAGGTTGCTTACCTACGTGCCTAGGAGAAGAGAACTAGATGTGGATAACATTACAGAAAGAAAAGGCAGGGgc--atcattttgcttttaattttgaaacaaatagTTCCGATTTTTGGAA--------CCATGGGCCAAAGAAGAGCTCATAATAATCACTGA-AAgttaaaaaca--taaacagaaaacaagactAAGGTGACACGAGGCAAAATGGTGACTAGAATAGAACTTTGATTGTAGTCTTTCCCTCCCTGCTGTctcctcggcttcctctttttaATCAATGGCTTTCTCTCTCTTCTAGCCTCCCAGACCCCCAGCATGGGGCTCCCAAGCAAGCC--CCCCTCACAAAACTGCTTCATATTTCAGACAATGATGTCCATTAAAAGATGCCTTATTTCCTCAGAGCCATATTGTCTGATCGATGACAGCTAATTAATCTGATAAAGTAATTCAGGCAGCTCGAATAATCGTTATTGTGGGAATTCTGTTACTAGGCCCAAGTAacctgtaattctgataggttccTTCTAGAGACAATGCCTTACCCTAAATAGATTGCTATAGTGGTAAGAATGGCTCAAACGCTGAGACTCTTTAT-CTCATACATAGGTCTTTCGAGGACCTACGTATGGTAGGGGCAGTTTCAATAGAAATGTTCAACACCTTGACTTTGTTCCTCTTTACTGAACATTTGTTGTAATTGGGGCAATAAATTATGTATCTGTAAAACA---TGATATTTAAGGTGAGTCATTAAGTTAGAAAGGATTTGCAGAAAAGCActacacatttaagaaaaa---ttccaCATAGCTACTACGTAAGTTTCCTGGCAGC-ATTTGTTTCCATTCTAAATATGGAAATTTAGTTCACATG----------------AATGATTCCATAGATG---------------TAATTGTGTTCATGAATTAATGTCTCTCA----CTATTATTTGGGAAGAACTCTTCTGACTATTATTTGGGAAGAATTCTTCCTGAAAGCTGGATATTATGGAT-----TTTGGTTTGGGATTTTGGTTTAGAATATCTGTAAAAAGACAAGTGTTTGTGGTGAATGTCAAAAAAGTAACCTTAGATACTTCTAGAATAAAGTTTAGTTTGGTTGGCAGCAGGCTCATAAAGGAGAAATTTTTGGCTCCTGCATCCTTGGGGCGAAGAACAGAGCTGCTCCTTCTG----CTGCCATAAGCTGGGAGAGACTCTTACAGGGTCCTCCGTGGTA-----------TAGAGAAGAACCGCTTCCTTAAGAACCCAGGA

a score=67592
s chr3           144077635 3749 + 160039680 [encoded data, 4284 characters]
s HiC_scaffold_1 130251160 3905 + 233722169 [encoded data, 4284 characters]

a score=156529
s chr3           144085080 7283 + 160039680 [encoded data, 7939 characters]
s HiC_scaffold_1 130259157 6804 + 233722169 [encoded data, 7939 characters]

a score=20915
s chr3           144094613 1034 + 160039680 GTGTGGGCCTTGCCAACTCATGCAGGGCACAGTGGGATCTGTGGTGTGTAGAACCATATTGAGCTTGTCACAGACACTTG-CACACTCAGCTGAGGTGAAATGAAGAGCAC-CAAAGCCTCACCCACCCCACCTATCTCACCATCATTTCAGCATCTCCGAGGGGAAAAAAGAAATCAAAAAGCCAAGAACCAAGTCATGTCATAGAGGAGACCTGTTGATGTCAGATCACTTATGTTGTAACCTCTGTAAGGGCCCTGAAGGCCTAAG-----AACTGAGAAATCCCAGAGAGCCTGT--GGAATTTTGAGTTCTG---GTAAGCTGCTAATCACTCTTACTAGATAAGTGACAGGACCAGTTGTTTCAGTTCACTGTCATCAATCTGTGACAAGCTGGGTTTGTCTGTTGCAACTCCATGGCATGTCAGGTCACAGTAACGGAGGCAAGGCCACATGAAATCCATGGTCCTCCTCTGGCGAACAACCCTACCTTAACTCATCGAAG-GCAGCCAATGTTGTGGGATACTCTATGGCACATTTGTCATG------ATTATTTATGTCCTTACC------------TACAGTCT-------AGAGAATATGGAGAGCTCTCTTTCATGGAATT-CTGTAGGAATTAATACAGTGTAGCCAAACAGGTGTCAAGAGGTTGAATTCCTTATGTGTCCGTGTTAAGGCTTTTCATTTCTTCATTGAAAAACTATTAGTTTATGTCATGCCATCTGATTTCTGGTTCAAGAAACTTCAACAAAACTGAACGTCTTAAAATGCATCCTTGAGAG-TTGACAGGCAAACAGTTGTGGATTCTAAGCCAAGACTGTGGCAGATGGAAGACATGTGACAGAGCAATGACAACCATACAAACAGATACAAAGAAGTG--ACTCAGCCAAAGCTAGAAGAGCTGATGGAACGACCACTGTCTAAGACCCGACACATTTATTTTGATTTAATCTCCTTAAGTAGCCTAATATCCTTG---------------AAAAAAATGTAGATACTGTTCAAGAGGAAAATG---ATGTTGGGGATGTGAGAGG----TCATCTCTATttgctggg
s HiC_scaffold_1 130268563  913 + 233722169 gTGTGGTCTTTGTCATATCCTGCTG-----AGTGGG-----------GCAGAGACTGCCTGGGCTTATCAAGGACTCCTGGCATGTCTAACTCAGGTACAATGCACAGTATTCCAGGCCTGACCAACCCCACTCAGCACATCACTTTTTCCAC-------------------------------CAAAAACCAATTTATCTC----------------------------------------------TGAAGACTCTGAAGTCCTAAGCAAGAAACTGAGAAATCCGTAATAACTTGTTTGGGATTTTGGCCTCTTCCTACACCCTGTTAATCACTGTTACTGAGTAAGCAGCAGCACCAGTTTTTTCCAGTAACTGTTGTCTGCCATCAACATGCTGGA--------------------------------CAC----------------CCGGATGA-----------------TGGAGAAAA-------CTTGAATCAGTGAGGCATGACTAATATCACTTGGTATTTTAAAGCAAACTC-TCGTGCACCTTACCATTTCTGTCTTTACCACGAAGTGCACTTGTAATCTGACCAAGAGAGTCTATGTAGAGCCCTCTTTCATTATCTTTCTGTGGTAATCAATACAGTGTAGCCAAATAGGTGTCAATAGGTTAGATTCCTTATTTGTCATTATTGAgggttttcatttcttcattgaaAAACTATTGGTTTACATCATGCCATTTGACTTCTGGTTCAAGTGTTTTCAAAGAagttgatttcttaaaaatgtctCCTTGAGATCCTGACCATCTAATAGTTGAAAAATCTAAGTCCAGATTATGG----------------GGCTGAGCATGGGCAATGATAT-AATGTATACAAACAGATGGTAGCCATCCAAAGTTAGAAGAGCTAAGGGAATAACCAGTTATCAAAAGTGGGCACGCacacttt-atttaaatttttaaagtagccCGGTATCTTAGTAGTTTTCCAATTTCAAAGAAATGCAGCTAGTATTCaagagaaaaatgtgtgtgttgTGAGAAAGAAAAGAGTTTCACTTCTATTT-CTGGG

a score=120612
s chr3           144096296 4268 + 160039680 [encoded data, 4473 characters]
s HiC_scaffold_1 130270725 3971 + 233722169 [encoded data, 4473 characters]

a score=34739
s chr3           144101916 1561 + 160039680 caaactttatttccgtttcaa--atgagtcagtgagcttgtgagtataaactttccagcacagtgtttggcccatacgaaggagtcaaATCAGGCTGGGTCCTGCCTCAAGGACCACTCTCTCTCCTTTCTCTGTTCCCACCTCTTTTTGCC----------TGGCAAGAAATGATAAGAGATATTTAGAACCCTTACCCCTGTGTG-TTTGGGGTACAAAACAGCCCTGCATGCTTTTCTCAAGCATCCAA--TAGGTCGTGCTGGGGACCAACATTATCCTCACTGAGCCTAGCTCATCACATAGAAAACAACAGGTCTATGAACCGTTCACTCTTATTCTGCAGGTACAAATGTAGTAAAAACACCATGATGGTCCACTTCTATACCTCTCCAAACCATGTGGTACTCAGAGTTAAAGACAGACATATATTCAGATGGTTTGAATGTGAGATC-----------------ATTCTTGCAACCCACAGAAAGGGTTAAACATTTCTGCTAGAAAAGGATTCAGTGCTCTGGCTCTAAA-TGTCATGGGAACATGGCCTGGAGAAGCTGAGGGCCACTGCATTATGCAATTACCTATTTACTGGAGACAGTATATTTAATAACTAATCATCTAATCTAATAATACTGAAGACTATCAGACTCAAAGGTCAAGTGTTTAAGATTAGGGAGAAAGCTGCCTTAAAAGTACATCTCCCAGAGCCTCACAGATCAACAAGTCTACATTCGATC-CGCCATGCCTCCATCACTCCCTGGCTGTTAAGGAGTTCAGAAATTCGACTCTCTTTCAAACATGGGATATTTATTATATGCATGCTATTGGCAAGAGTTTT-ATTCCATGAGGTCT-TTAGTTAGAAACTTAAA-------GTCATTGGGAAGAGGAGTATTAGCTTCCTGAAGAAAAATCTCCATGTTAGGAGCCTTTTGAGTCAAATTTTAGAATACATTTTTTT---AATGAT-------TGTTAATTAGCACGTAGTAAATATACAATTTTCTGGGACTAGTGTGGCACTCtatgtatatgtgtatgtgtatgtgtatgtgtgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtgtatgtgtatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtataAACACGACCTTCAGCGGTCAGATTTGGATTGTTTGTTAATA---TCCTAATGTAAGCTTTGGTGCAGACTGTTGCGTTTCTCTTGAGACCTCCTTGTGGTGACAAGTCCCATTTGCTTCTGATTGAAATTTGCTTTTCTGAACCTCTTTCTCAGAG--CTAAGTGATCATCTTTCCT-------------------TTAAT---------------AAACAATCTCAAATTGAAAAGCCACACTTTG----TCACTTTGGAAAGCCAACAGAGCAGTCCTTCCTCACTCATGAGTAAAGGGAAATTCTCCTCACTTTTCGAATTCTTCCACT------------GAATCCCATGGCTTACTGACTCGCTCCAGTATCTGATAGGACAAAATTGGTTG
s HiC_scaffold_1 130275769 1404 + 233722169 CAAACTTCATTTTTACTGGGGGGATAAGTTGAGACGTCTGTGTGGGTATAGTGCCTAGCACATTGCTTGGC--ACGGTAAGGGACCAAAGCATGCTTGGTCCTGTCTTTTTCTCTATTCTCCctgctctccccacccccacctcatcATGCCACACAGAATTTGGCAAGAAGC-ACCAGAAATATTTAAAGCTTCAATACCTGTGTGCTTTTTGCTGCAAAATAGCACTATAAGCATTTCTCAAGTACCCAACATAAAGCCTAGTGAGAACTAG-ATTGGTTTCATCAGGCC-AACTTATCAT-TGGGAGATGTTAG-TTTATGTAGTATTTACCCTTATTATGTGggcataaaagtaataaaaattttgtgATAAT-------------TCTCAAAAACATGTGGTCTTTCTCATCTGATACTGCTCGCCATTCAATTTGCTTGAAGGTGAGATCCAAGGAAATTTTGGTACATTCTT-CTACCCACAGAAAGAGTTAAACATT-CTACTACAAAAGGACTCCGTGTTCTAACTCTAAAATGTCATGGGAACATGGCCTGGAAAAGCTGAGGACCATTGCATTATACAATTACCTATTTACTGGAGACAGTATATTTAATAACTAATCATCTAATCTAATAATACTGAAGAATATCAGACTCAAAGGTCAAGTGTTTAAGATTAGGGAGAAAGCAgccttaaaaatacatttcaaagcaTCTCACAGATCAACAAGTCAGCCTGCAGTCTCAACATGCCACCACCAGTC-----CTGTTAAGAGGACTGGAAAGGTGACTGTCTTTCCAACTCAGAATTTTTATTATCTCTACACTACTCACAGGAGTTTTAATTCTGTGAAGTTTCTCAGTTAGTAGTTAAGATTATTTCATCCTTTATGATGGCATTATTAGCTCTATAAAACAAA-------------GAAACGTTAAATAGGAATGTTTGGATACACTCTTTTTCAAACTATGTTTCCCTTTTAATTAAGATACAGCAGTTGTACATATTGATGAGAATACGGTGACATTTCA-ATACATGTACA-----ATGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTGCTAAATCAGGGTGATTGGTTGATACACTCTTAATAAGAGCTTTAACCCCAATTGTTGT-TTTCCCCTGGGACTTTCTTGAGTTGACAAGTTCTATTTGCCTCCATTTGTGGTTCACCCTTCTAGACATCTTTATCAGTGACTTAAGTGATCATCATTCCTCGAGACGGCATGGTACAACTTCATTTCTTTGAGCTCCTAAAACAATTTCATATTGAAGAGTCATCTTTTATTTCTCACCTTGGAAAGGT----GGgcattcttttc-cattctttaacaAGGGAAAACTGTTGTCATATTTCAAATTCCCTAGCTAGGTCCCCTAAAGAGTCACACGTAGTGCTGACTCTCCCTGGCTTCTCATCCTGCACATTTGACTG

a score=197329
s chr3           144104304 8152 + 160039680 [encoded data, 8575 characters]
s HiC_scaffold_1 130277264 7352 + 233722169 [encoded data, 8575 characters]

a score=21578
s chr3           144113569 1134 + 160039680 ACCAAGGGTGAATAGGAAAGGCATCAAGTGCTGATGTCAGGTTTCAATCCCCGACATGTGTGTCATTTCAAATGAGCCAATTTAAAACATTTGCAGAAATCTCTAAGGA-TATCTGTGGAGTGTCTGAGTCACCTTCAAAACCAAGAGTAGCCCATGAGTCAACAAATAGCCT-CAAATAATAACTCAATTTAACTACTAACTTTTAAGCAAAGGAGAGTGAGGGAGAAAGCCTTGCTGGGCTACCCTGAAGCCAATACTTTCAGAATTATTGGCACCCCTCCATGGATTGCCCCAGTCGGCTGTCACTGGCTTCGGGC-TGTATATGGTGTCTTCC-AACTCCTAGTTAGCAATGTTATGAAAGTTACTTG-----GACAAAGTA------TCTGCATCACAGAGTTTGTGAAGGGTTATCCATCAAGC-CGCCCTCCCGCAAACCTGACATAAAACCTTTACCAGCACACCAC--CAGTCGGAGGA--GCCTGTGTCAACAGGGCAGTTTCATAGGGCATTCAGAGAATCAATGCATGACAGGAAATGTTACTTGGGTAAAGAGG-ATATAAAAGCATAGCGTGGGGAA---ATAAAG-GAGAGATTTATAATCTATTAAAGGAGAGCTGAGGTTCTCAA-CATTTTGGCTGTCATCCAAACTCCAGCGATGCAGTGTGGGGCCAGGGATTTTAATTTCTAGCTAGTTCCTATG---------------------CAGAACGGTTGTTTGCCCTCACCACAGGTCCCAGAGCTTGTGGTGGCCACCTGGTTGAGCTAGGGAGTGGGGGTTGCCTAGCAGGTATGGCTAATTCCATGGGATTGGCAGTTCTTGGAAGAGGAAATCAATGGCCATGTAAAAACAGTGTTTAAGCTGAAGTCTGCTGAAATGCTCCCCAGAGAACCACAACCTTCTCACAGCCTGGGAGGCAGTGCTACCCAGCATGCTCATGGCATGAACAAACCTCAGGCTGAGTACCTTCATCCAACCCTGCAGGTGTGGCCATGCACCTTGTGGCCGTGCACCTGCGTGGAAGGCTTTTTGACCAGTTCGTGTCATCTACCAGAGGGCACACCCTTCAAGCCCACAATGAATTCTCTGTAAGGCAGGGCCCCATTAAGACTTAAAGTGTCATTACTCACATTGTAATTTCACAGGGTA
s HiC_scaffold_1 130284647 1061 + 233722169 ATCAAACATGCATAGGAAAAGCAACAAATATAGGTGT-AGGTATTAATCTAGTATGCGTATGACATTTCTAAAATGCTGTTTTAAGCTGATTTTTAAGTTATCTTAGGAATGTCAACAGAATATTTA--TTACCTTAAAAACCAAAAGTATTCATTGATTCAACTAATGGCCTACCAATAATGACTCAGTTTGACCCC--ACTCC----------------------AAATCCCCATTGAATCAAATTGGAGCCGA-AGTTATAGAAATATGGGTACCTCTCCCTGGGTGGCTGGAGATGGCTTTCATCCACTTCAGGTACGCACATA---TCTTCCTAACTCCTGTTTAACAACGTCATGCAGCTCACTTGAAGCTGGCATAATAGCACTGTTTACATCCCAGGCGTCATGAATGGTTACAGGACAAGTACCCCCTCTCCCAAGCCTACTGCTAAACTTTGGCCAGCACGTCATTGCAGTCATACCATTGTCCCTGCCAGCAGGATAGCTCAA--AGGCATTGAGAAAGTCAATCTGTGACAGAATGTGTTACAGGAGTAAGGAGGGATATAAAAATATGAGgtcaaaaatgaataaagtgaaagatCTAca---------------tcagtggttctcaaactctTTGACATGCATCCAAACCACTCATGTTTAGAGTGGTGCCAGGGATTTGCAGTTCTGTGAAGCTCCCATGTAACATCACTCACTTGATTTCCAGTATGGTTATTT-CTCTCCCCAGAAGTCC-AGCCCTTGTGTT-----------TGAG--AAGGGATGGAG-CTGCTTGGCAGGTACAGCTAATTCCACTGGATTGGCAGTTCTTG--ATAGGAAATTGATGGCTgggtataaataattttaaagctacAGTCTAGTGACATGTTCCCTGAGGACCCAGAGGCT--GCACGGCTCGGAACACAGCACTTCTCAATGGCACCCCAGTGTGGAAAAAATGCATGCCAAACACCTTCATCTAGCAct---------------catcatatttttattacattaggTAGAATG---------TAGTTTGAGTCAGCATCTA--------------------CACAA-------CTTGGAAGGCAGCACCCCATTAAGACACAGAGCGCTGTTATTCTTATTG-GATGCCACAGGGCA

a score=56689
s chr3           144116974 2362 + 160039680 AAGAGACAAATGGAC---TCCACTGAGTTCAAATTTTTCACCCTCTGTAGTATCACAGATACGAAATTTGGTTGTGAAGGGAGTCT------CACTG------------TTTCTCAAAATACACTTCAAAAAAATAGGTTAAAACTGAGTACAGGCTGAAGTCTGGCTCCTTCCTATCTATGCAGTAACTGAACACCAGTGATAACTCTGGCAGAA-TGAAAAGCCATAGATGATTAATAGGAAAGTATTCAAAGATGTGATTTTTGCCAAACAAAACATTAATGAGATTGAAAAAAATTCCCATTGACAAAGCCTGTGCCTGTTGGGCATCCATGAAGAATGTGCTAGACATGAACTTGACTGAACCTG-AAAAGAGTTCCTGCTTGTTGGGTTAGATCTTCCCACTAAATCCCTCAGCGTGGAAATGTTGCTTTTGCTTTTCCTACCTGTTCTGGGTAAAGCCCCTC----------------GTGTACTTGC-----------TGTGTTCCTGAACTGCTTACGAAATGTTTAGGCTCGGATTCT-------ACAAACTCTTCAGCTTAGCCCTGACCTCTGTGAGAAGTTTAGCCAAAAAGAGAG-------ACAAGAAAAGTTGTTGACCTCAGAGGAAAGCTTCGGAACCCC-------AGGGAAGCTGCCTACACACCGCAcggtcgg------------------tcggtcggtcggtcAGCACTTCAGAGGGAGTCCTGTGG---------CCCTTTGCTGCT-----------------CTAGTATAAGTGG--AATGCCGATGTTAGTAGAGAATTCTTTATAAATTAAAATTCCAATGATTC----TAATTCTTATCAA------ATTGGCAAAAA------AAAGTCAGAACACAAGATTTTATATAAAAATGATTGAATGGCTCGGTTCTAAAATATAGGT-TATGGGAGTATAAATTGATAGAAACATTTTGGAGGATAACTGTTGGAAGCAGAAGCTAACAGAATTCCAA-------------------------AGTGT-CATGAGcta-------------gactcagaaagcttatgatctaattctgaccttcccatttgcaaccgtgatactgtaagaaagttgcttagatctc--------taaatttatga---aaagaatggagatactaatagcctctgtaccttgagggatgtccgtgggaatgctatttataaaatacttgtgatagaacctggcTTGCAGAAACTATCAAATAATCGTAAACCCTGATACTAGGAAAATACT----GAAACTCT-AGGCAAACATGTAAGCTCACTGCAAACCAGCATTTTATAGCCCATGCACGGAAATTAACTCTGAATATTCATCACTAAGAAAGTATGTGAGAAAGTACGAAAGTATGTATGGTATATCTATGTAGCTGGGTAGGTTACA---------------AAATGCAGTTATGTGTACCCCATGACCAGCAGACTGCTAAGCATAAGAACAGATTA-AACAAGGAAAGTCAGGTATGATTTCAATTACGATGAAAGCAACTAGTAAATGTATGGACATGTACCTATAAGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtAAAATGAaataataatgataataata----------------------------ataatgataataatCACATCTGACA-GTAAAATTCAAACTAGGGAGAAGCGATTCTCAGTTGTTAATCT---------TCTATTGTTTGAACCTTTTAAAATAAACGTGAATTACTTTTATAACTAAAAGGATGTTTCAACTGTTAGTCTGAACACTGTTTAGATTTAAATAATTCTTCTCTCTTTTTCTCTCCTTAGATTTTAGGGGCACAGTCACGAGGCA---GATGCTGTTATCACTGACTTAGATGACCCACCAGCAAATGAGATTGTATGTAAAGTCCATACAACTAGCTGGTCTAGCCACTGAAATCTATGGGAGCATAAAATGTGGACACACTTAGGAAATCAGCTTGCATTGTTCAGTGAAGAGGGTGTGATGAGATTTAGTTAGTCTGTCAGA-ATCAAGGCCTACCCAATGCTCAAGAAAAACAGG-ACTGAAATATTTCAAATGTGAGGTTATATTAAAAACCACAGTTTCCAACTGTGAAGCCAAACAAACCAGTGATCTGAGTTTATTGTTTTAGGGAAGG-ATAGCGCAGTCCTTGATGGAGCCCCAAACTCAGCATT---------AGCAGTCAGTGCTTTCTCTT-----TAATCCTTTG-ATTGCCAAGTTCTCTTTA-----CCTGACAGAAAGAGGCACTTCTGCAATGAAGGTCTCACTGTGCTAATCCATGGAATTCAGAGACCTTAACATTGAAAGAGGagctgagga-------------tgaaacgcttgcctgacaggtatgagaccctgggtttgatctccagtactgcaaagacaaagaaataaataagtaataaaacaaAGTTGAAACTGGCCTTGGAAACCATCCAGATCAGCATTCTCATGGTGCACAAGAGAGTGCCGAGTTCTCAAAGGGTTCTAGGATTCTGGAAAAACAAAATCAA
s HiC_scaffold_1 130285901 2534 + 233722169 aataaataaatggaaaaatccaCTGCAATCATAGGCCTTACCCTTTATAATTTTGGGGACCTGAAATTTGATTGCAAACGGTTTCTACAAAACATCGGTTGGTAgttcttttttcaaattatattccCAAA---CGGATTAAAATTGAATACAGGATGAAGTTTGGCTCTTTTATAACTATACAGTT-CTGAACATTAATGATAGCACTgtcagaaatgaaaagtcatagATGATTAATA----ATCTTTCAAAAAAATGATTCTTGCCAAACAAagcatcaatgaaattgaaaataattttcattgacAAAGCAAGTGCCTGGTGGGCATTCCAGAGGAATGTAATGGGAATAGACTTGATTGAACTTTTAAAAGAGTTTTTGCTTGTTGGGTCAGATCTTTATGCTGAATCCTTCAATGTCAAAATACTA-TTGGGCTTCTCATAACTGCTTTCAGCAA--CTTCTCATTCAGTCTGTGTTATGTGAATTTGAGCACTGCATTGTGAGTTCTTGGATTGCTTTAGAAATGTTTGGGctacaattcttttaaaaaaaaaagcttctgctCACCCATGTCATTTTTGAGAACTTTAACCAAagaaagaatgggagaaaaaaaaaagaagttaaccTCAAAAGCAAACTTTGGAGCCACTACAAACATGGAAGCCATGCACACACCAGGCGGTCCGGGTTTCCTTCCCAAGTTATGTGTGGGCTTCTCTGCTCTGGGATGACAATCTGGAAATAATGAATtccttttactgattttattgtaCTAAATATCTAATAAAAGTTACTATTACAAAGGTTGATGCAACATTAATCGTAAGTTAAA---CCAATAATACGATACAATTTCTTTCAACCACAAATtggcaaaaacttttaaaagtaaggaCATAGGATTTGGTAAGGAAATAGTAACATGATTGAACCCTCAAATAGCAGTGTGTGGGTGTATGAATTGATA--------TTTAAGGACAACTTT-----GCATTGTCTATCAAAAATCCAACTACAGCTACCCCAAGAGGCAGCAGAATGTGTATGAGCTAAGCATAGACTCTGGAACCAAAGAACTTGGGTTCTAATCCTGACCATTCC--TCGCA----CGAGGCCTCAAGAAAGTCCCTTA-ACCTCCCTGAGCTTAAGTTTATCATCGGCAAAATGGTGATAATCATAAAATCTATATCTCAAAGAATGT--------------TTTATAAAGTGCACACAACAGAGCCTGGAATATAAGAAGCATCATGTAATC-TAAAACCCAATTCTAGGGAAACAGTCCACAAAACTTTGAACCAAAGGTATAAATTCAACGGGGCTCTGTTTCTCACAGTGTATCAGTGGGAGCCAACTATAGATGTCCATCactgagaaa-----------aacataaataaatgttgataACATCTGTGGGATTGAATAGTTTACAGCCCTTTAAAGAGTGAGGGAGAGCTACATGT-TCCTAAGAACAACATATTTCTGAGTACAAAAACAAATCGTAAAACAGTATGTTCAATATAATCCCA-TTATTGTAAaagcaaat------------------------------tgtgtgtgtgtgtgagagagagagacagagagagacagagacagagacagagagacacagagagagagacagaaacagagacagagagagacagagagaagataCATGACATAAGTGACTACCTCTGAAGTGTAGGATCAGAGTTGGGGAGAAGAAATATTCAATTGTTATTTTGTATACATCTCTATTGTCTGGGCCTTTGAAAGGAAACTTGCATTATGTGGgtaattaaacaatattttcaacCATTAATCTGAATATGATCTAGGTTTAAATAattgtattctctctttttc-----aAGACTTGAAGTAGTAGCCACAGGGTGCATGTTGCTGCTATCGCTGACATAGGTGACCAGCCAGAAAATGAGACTGTAAGAATAGttcatttaattaaatgttttggCCACTGAGATCCATGTCAGTGCAAATTGTGGAAATACTTAAGAAATAAGCTTTCCTTGTACAGTAGAGAGG--GTAATGAGATTTGGTTAGTCTCTGACAGACCTAGACCTACCAGGTCCACAAGAAAaacaggttttaaaatatttcaaatgtgaaGGTGTATTATAAATCATAGTTTCAAATTGTGAAGCCAGACACATCAACTATTTTAGTTTATTGTCTGAAGGAAAGCACAGTGTAATACGTGAAGGAAAACCAAAAGCAGACTTACTGTTCTCAATAGCCTGTACTTTCATCTAATACCAGTACTTTGCCTTGCCAAATTATCTTCAAAGACACTGCCTGGCTGAAGCTCCTCTGCCATTAGTGTATCTGTGT-TTAGTGCGTGGGACTGGGAAGTGTTAAGGGTGAAGGGGGGGCTGACGAAACGtctcagtggtaaagtacttgcttaacacacacagagccctgggctcagtccctggaacagca---------aaacaaacaagccaaCAAATCCACTTGAAAGGGGACTTGGAGATCATCTAGCTCAGTGTTCTCATTTTGCAGAGGGGA-CACTGAGTTCTGGAAAGATCATGGGGCTtcgtaaaaacaaaatgaa

a score=41094
s chr3           144122449 2628 + 160039680 tacttacattaagtataaatggcgtaaatactatagttaaaacacaatgaacagcagaga----gtctaaataattaagttgaattatatgtccactataggagatatggctaaagtataacaaatagaaacattgCATGTTGAATTTTTAAAAA---------------CACCAAAATAAAGGC----TTACTACGCTCATATTAGACAA-ATGTTCTTTCAATAATGACTTGTTCACACAAATGTTATGCTGAAGAAGAAAAGAAAAAAAAAACTATAAATAAGACATGGGTCCTTGTCTAAATAGTAATTTTAACACAGTGAGCTAAGTCCTTGGAGAAGATTATA--AAATGCTTTGATGATTCGGATCCAGAGACAAGATAGTGCATCAATTGTGCCTGGTAGTTAAGGATGACTCCTTAAAGGAGTTGACATTTCATCAGGTTTTGATAAATTAACTTATCAAGTAGTTCTGAGTAAGGGGATGATATTCTATGCAATAAAAACAATATGTACAAAGTATGCA-TCATAAATATTCATTAAGATTACTGTTCAAGAATAGTCAGGACCAAGGAAGCAAGGTAGCTTATTCATGCTATAGTGGATAGCAATGGCAGATGGTATGGTTTACTGCCCAGATCCCTACGTCCTTCCATAAGACATTTATTTTCCCAATTGTGTCAAATG------------CAGTTGAAGGTTTATTGTAAGGGCCTCCATTCCTTCCTGTGTATAACTACCTGTGAATAAGTGTACAGGAAGGCATGCCTTTGTCTGGGATTATAGTACCTCT--TGATGGAGCAAAATATTGTagtaacttcccaatgcaatgactcaaaggcctgtcccattagccacaacttgagtcagttaagaagggaaacccttgctgcagagttcccaggggtgtctgccaaggctcatttgaaagcaaaaccccaattcactttctttttctattcTTTGTCCATTGATCTAATAGGTGCTAAAAACACACCTTCCC---CCCCCCCCAAGGGA-TTCTTGCACAGCAATCATCACGT-AGAATCTGTTTACCAGGAAAAATAGCCTCCCACCTTGGCGAAAATAGAATAAAGTCTGAAGATCCCGACTCCTAGA-CAGTG------TTCCCCCACACTTGGCT----ACAAGCAGAA----------------CTGAGACCAAAGGGTTAGCTT--TTGCTTTCGGTTGCTGTATTCCCTCTAGCTTCATTTGCTTGTGATCTTATTTCTTCATTCTTCCTCAAATTAAATCACCAATCCTGCTGAGGAAAAGGCTACCTATACTAGTATGC-------TCTCCAGGTACTGCAG-GACCAT--AACCAGGAAGGGGACTCTCTTCATTGAGCATCTCTAGCCTGTAAGATACTTTTCTCTACCACCATGAGGTCCAAGCCTCAGGGCCATTAAA-----AGCCCAGGCTCCCACAGCCCCTC--------------------------------CTCCTCCTCCGTTTC-CAGTTGCTGTTTTA--GGAGGAACATATTCAGAGTATTATAAAGCAAACAGTAGAGAGCAAGAAGGAACTTGAGGTTGCCTGCTGACATCCATCAGGCCTGGCTCACCTCGCAGGTTGTTAGACATTCTGATAGCCCATCCTGCTCTCAGCCTTCAGACTGCACTACACTGGGGTTTCTAAATTCAACATGGCTCTCATCTCTTGATGAACCCAGGTCCCCAGTGAGACAAATCACGGA-GACCTTTTAATCCAAAGATTTTTCTCTGTTGAGATTTGAAACCACAGATAGACTTGAAAAAGTCTTTAATGGTTAAGTGGAAAGGGTTCTTCTGGTTTACCTATTTGTTTTCTTTTCTTCTTATTTTCTttttctttatttagatgagtactcagaatgtagccaaggataatcttggaacttgtggtaaccctcctgcttcaacctcctgagtgcttgggttacaggtacatattagcatgcctggATCAACATAGAACATTTGATAACAAAATGCTGGCACCATCAATTCCCTTTCCTCCACAACATTGTTCCTGTTCTCC--TCTGTCAGGACAGGGGTAGGGCTGGGACTCTGAGGCCAGCCGCAGGCCCAT---TTTTATGTGGCAAAGTTAATAAAATGAAAACCAAAGGCATCTTGCA---------------------GGGCAGAGCCTGGGCACTCTGCCAGAGAAGCTGGCATCTCTGACAGGGCATTTTGATGCAAATGCCCAGCTGGG-CCCACTTGTTCCTTATTTACCTCACAGGGCTATCCTC-GGGTGTCTGCTCTCTGTAACACTGGAACACACAGAGACCATCACCATCCGG------ACACTG-----ACAATGTGCCAGACTGGGGATCCAGGATGAGAGAGCACTACCCCGGTAAAGAATGAGGCAGCTGTAGTAAGACAGTCATTAAGTCTGAGCCTCAGGACTGGTAGCAATGGGCTACCTATTTCACCTATAAAACTCAGT-AACTTCTCTATAT-------ATGGTACCAACTCTACTGATGGAAGACT--------------------AACAACCTAATG----TTATAAA---GGTGCTTGCTCATAGTAAGTGGAACAATAAA---TAATAGTTCTTCTAATCAAAGACCATTTCCTGATGCTATACTCA-----------GGTCTGAGGCTCTCCTCCTTCTTGCCTTTCATCCTTTAAAGCTTATTCATCTCCATCTGAGCACAGTGTTCACTT----GTGTCCTACCATGAGATAAATAGAATCTTCTATTCTCAAgtgtgt
s HiC_scaffold_1 130293737 2344 + 233722169 taactatattaaatataaatggctTAAATGTCATAGACAAAACACAAAGATTGTTAGATACATAGTATAAG-AATTAAGTTGAACTAGATGTCATTTACAGGAGACATAgctaaaatataataatacaaaaaattgaaagtgAAAGATTGAGAAAAATAAGCCATGcaaatattgaaaaaaagaaCACGTCACTATGCTAATGTCAGAGAACATAGACTTTAAATAATAACTTGGTACCCAAAGTTTTATGTtggggaagagaagaaaactaCAAATGTAGGTAAGA----GCTCACAGTCTG--TGGTGATTTTA---CAGAGAGATAAGTCTTAGGAGAGGTATATATGAAATGCTTTGATGATCCAAAAATACAGA--AGACAGTATATTAATTGTGCCTGAT--TTATGGGTAACTC-TTAGAAGAGCTATCATTTTATCAGAAGTTGATGTATTGACATATCAAGTAGTTCTGAGTGAGGGGAAAACATTTCATTCAA-GAAAATATTATGcacaaagtagatattcaaaAGTATTGGTTGAACATATGCTTAAGGAATAATGAGAACCAAAGAAGCAAGGTGCCTTACCCATAT-------GGTAGCTGTGGTAGATTCTATTATGTATGGCCCAGACTTCTCC-TTCTTCATGAAGGCATTTGTCTTT---AGCGTCTTTAGTGAATTAGTGTTGCCTGCCAAGGGTTTACAGTAGG-------ACCCCTTCA-----ATAATTGCCTTCTG----------AGAAAGGCATGTCTTTGTGTAGGATTACGGTCCCTCTCCCAAAGGTGATCAGTA-TGCAGTAACCAGCCAGTGCAATGACTC--AGTCATGGCCCCCTTGACACAACCTGAGACAGGCATGAGGGGCAACCTCTGATCCAGAGTTCTCAGTAAAATCTGCT--GGACCCTTTGCAG--CAAATCATAATTCATCTTTCCT--------CCTGTCC---------------------AACTCTGCTTCCCTCGCTCCTCCCAGTAAACCTTCTGCAGGGTACTCTCCATGTCAGAGTCAGCATCTCAGGAAATAAG---TACCGTGGTGGTAGAGATGGAA-GAGGCCCCAGAATCCTGACTCCTGGagccatgttttctttcttccatgcCTGGTTGATAGAGAGtaaaattttctatgtaaatCCTTGGAATTGAGAGGCTGGACTGATTACtactaatattttcattcattttag-tttgtttgcttg------------ttttttctttctcaaacccAATTGCCAATTCTGCTGAGCAAAAAGCTATCTCGTCAATTATACTGTTCTATCTGCAGGTAGTAAAGAAATTATGGAACTAGGAA-GAAATTTTGCTTACTAGTTA--TCTGGCCTGCTAG-TAGTTTT------CACCGTGAGATTTGTGCTGACGGGTGGATAAAGGACTGGCCTATGCTCCTGCAGCTGCCAAATAGTAGAGTTAACATTTGAATCAGGGTCAGATACTGCTCTGTTGCATAGTTGCCTTCCTAAGGGAGGAACATATTTAAAGTGACCTAAATCCAGTAGCAAAGAA----------------------------------------------------------------------------------------TCAACCTT---------------------------------------------------------------------------ATATCACTGACAACCTTTTTATCTGAAGA----TCTTTGCTGAGATTTGAGTCTATGGATAGATATGGCAAGTCCTTTAAC-----AGAAGAAAG------------------------------------------------------------TGAGT-----------------------TCTTGG----------CACCCACATG--TCAATATCCTCAGCTCCTG--------------------------------------------------------------------------TTTTTCTCTACAAC----TCCCTCCACCCCAATAAGTCAGACTAGGGATG-----------CTGAGGCCAGCCCCAAGCCCACTTGTTGTGTGTGGCAAGGTCTGGAAAATGAAAACCAGAGGCATCTCAAAGAGCATTCCATTTGGGCTCTGGGACAGGGCCTGGGCACATTGCCAGAGCAGCTGGGTAGTCTGGTTAGGCactttgatgcaaatgcccagcTGGGTCCCGTTCATTCTTTATTTACCCCACAAGGCTATCCACAGGGTATTTGTTCTCTGTAATGCTGAAACACATGGAGGCCATCACACTCCTGCATTATACACTGTGCTCAGACCATATCTGATTATGGAACCAGGATGGCACGATACCATCCAGGTAAAGAACAGGGTCTTTGTAGTTA-------------------------GACTAATAGCAGGGGGCAAGCTATTTGACCTGTAGGCCTCAGTAAACTCATCTATGTAATAGGGATAAAACCCACTCTATTGGTGGGAAACTTAATGAAGAGTGAATACAGAATTAGCACAGTGCTAACTATGAACTGAGTAGTGGCTCAGAGTAGG-GGCTCAGTAAATGGTAATTGTTATTCTAGCCAAAAATT-CTTCCTTCTGCTAACACCAGCAGAGACAATGCTATGCAGGTGTTCTCCATTCTGTGGTTTTCCCTTCAAAGCTTG------TCCATCTAAACATAGTGCTTGGTTGGTAGCACCCTACTGTGGGATGAACA-CATCATTAATTCTGAAAATTGT

a score=117115
s chr3           144125815 5500 + 160039680 [encoded data, 5862 characters]
s HiC_scaffold_1 130296108 5069 + 233722169 [encoded data, 5862 characters]

a score=58510
s chr3           144133026 1214 + 160039680 TTAGAGATCGATAATAGTGTCTTTTAAGAAACCTGACTTTGCTAAAAAAAAAGTGTGAGAGC--------------TTTGCATGCACCCGTCTAAAACCCTGTGCTGTGTGGTAACTGGATGCACCAAGCTAGGACGTGGCCTTCAAGAACAGAAAGCACGCCTGTACGCACTAAAGAGAGTTGAA-CTCCTCAGATAAAAGACATCTCTATGAGGCACGTGGATGTGGATTTGATAATCTTTGACATATGTTTAATATTTTGATTTCCAAGATTACCCATGTTCATCTCCACTGCCC-CCTTACTCCTTGCCTCTCATGCACGCTGGGAGATGTGGGGTTGGACCTGATTCAAGCCGGATTTGTTCCCGCTGCTTTACTGCTGCTAACCTCGGGGTCAGCAAAAATCCGAAGAATCATCGGCTTCTCTCTCTGCCGAACTTTGAATCCAAAACTTGTGATTCTGTTT------GAAAAGGAGGAAAGAAACACACCAGTGAATAATGAGTGTAGTAAAAATGAATGTGTGGTTCTGGGCCCCGTTTAATTTTTCTTAAGTGACAGTGTTGTTAATGCTATGAAATATTTTCTTTGATAAATGTGAGTTAGCTAATTTGCATGAATGGCTAGTCTGTCATTATTTTCGTCTGTTGAGTTATGGGGTTTT-TTAATGGTTTCTTTTCTGTGCGGCTTTTAATACATTGTTATTATATGTGATCACTGAACTCTACTGAGCACATTGAAAACACGGGTTTCATCTCTTTAAAATAAGTGGAAATTAATTTTGAAGAAGTAATTTATGTAATAATGAAGTTCTTCAGATAAATGTATTTATAAGGAAAAGCCATTTACACATTATTCGGTATTCTATT------------------------------------TTCTGCCCAAGTCTCAATCACAGAAAA------CTTGGGAAATGTTAACTTAAGCCTATTAAAGATTCCTCTTTACTT-GGCTCCATTAATTCTTCGGTAACTGAAAAGGGAGAGTTCTAGAAAGTCTCCCTTGGACG---ACACCACAGTAAACTGAAGAGCAGAAGGAAGTCATTTGAATGTAAACTTGGAGTTTTGCTACATTCCTGTAAGCTGAAAAATACTTCAGTGGTACCCAGAGAGGTTCCAGTGACCTTCCTTGGACACTTAAGAGCAAATGAACATCCCGAAAAGGAGGAGGGATTCCAGTCA-AGCATCGCTCCCACCTTCTTCTCCTTT---AACAGATCGAAATTGAACTCAGTATCTCCTGA
s HiC_scaffold_1 130302821 1260 + 233722169 TTGGAGATTAATAAGAATGTCTTTTAGGCAATGGAACTTTCTTAAAAA----GTGTGGGAGCGGGGGAGTTATGTCTTTACAGGCACCCATCTAAAAAT-TGTGCTGCA-GTTTTTGGGATGTGCCAGGATTTGATGAGGCCTTAAGGGCTAGAAAACCAGCCTACGCACATCGAAATGGGTTGGAGCTCCTCAGATGAAAGACATCTCTATAAGACATGTGGATGTGTATTTGATAATCTTTGAcatatgtttaatatttagatttccaAGATTACTCAAGTTAATATCCGCTGCACATCTTACTTTTTGCCTTTTGTGCTCACTGGGAGATGTGGGTTTGGACACATTTCAAGCCAGATTTGTTCCTGTTGCTTTATTGCTGCTAACCACGGGGTCACTAAAA--TGGGAAAATCATCTGCTCTTTTCTCCACTGAACTTTGAATTTGAAacttaccaatttttttttaaaaaaagaggaagaaagaaacatgcaaatgaaaaatgagcacagtaaaaataaatgtgtggTTCTGGGccccatttaatttttcttaagtgACAGTGTTGTTAATgctatgaaatattttctctgataAATGTGAGTTAGCTAATTTGCATGAATGGCTagtctgtcattattttagtCTGTTGagttatgagtttttaaaaatgggttcTTTTCTGTATAGCTTTTAATACATTGTTATTATATGTGATCACTGAGCTTTCCTAAGCACATTGAAAACACGGGT----TCTCcataaaataagtagaaattaaTTTTGAAGAAGTAATTTATTTAATACTGAAGTTCTTCAGATAAATTTACTTACAAGGAAAAGTCATTTGCATGTTATTCAGTATTCTTTCttaggcaaaaaataaaataaaatgaaaactaaaaaattctgCCAAAGTCtcaatcacaaaaaaaaaacccttgggaAATCTGAAATAAATCCTGCTAGGGTTCTTGCTGTATTTAAGCTTTGATAATTTCCAAATGATTAAAAAGT----GTTCCACAAA-TTTCCCTCATGCACCTGCACCAGAGCAGGCTGAGGAGCTGAAGAAAGGTCACTCATTCTGAACCTCGAATGTTGTTACATTCGTGCAAGTTAGATCATGATACTAGG------AAAGAGGTCTCAGTG-TCTTCTTTAGAGCCTCTAG---AAAGGGAATTCGTGTGCCAGAGGAGAAATTCCAACTATGGCACCACCTccgtcttcttttcctttctaactGGTTTTAAATTAAACTCAGTGGCCCCTAA

a score=28810
s chr3           144137281 2060 + 160039680 CAGCATCTTCAGGTACTCTTTAAATATTATATGACTTTCTGTTAACAACTGTCCATCTGAT-CATTCCTTA--AACATGTGCATATGGGCTCCTGCAGTTAGATCATTAACTACCAGAGTGTGAGATCTGACCTCACAGAGAGGCTCCCACTGTCTGCACCTGGCTTCCTTCGCAAAATCTACCACAGAAACTGCAGATCATCACAACTAAGTCACCCTGACCTCAAGGCCTAAGACACACATAGAGACTCTC---TTACTGGTGCCTTTCCCTGGACCCCAGTTTCTCTCAG--TTCTAGCCTGA-GCTCTCAGCCCAAGGTCTCACTTTTGGCTAGGTTTGGGGTGTCAACTTTCTCTTTCATATCTTTGTTTCTCGCCCCCGGTTATGGTCATTTAAGATGAGGTTTTGCTTCTGTCTCGTGCTTCCCCAGTGTGTGGGGTTTCCTCTTTCATCCCCAGCTTGAAGAGTTGGGCAACAGGA-------TCCCTTACTCTAATACTGGCCATCAACTTTCTGTCTGACCTTCCAGGTATGTGCTCTTAAGTGCTCATGATTGGTATAGCTCATGTCCCTACCACCTCATCTTGAATGATATTGACAATTATTTG---------------GCAGGATCTAAGAGTAGTGTA---------------------------------------------------TGTATGACTCATGCCTCCTTGTGTCCCCAATGTACCCATTCAGTGTCTGAAACACTCCATGTCAGGCTTA----TCAGACACCAAAGCTATAGATGGACCCAGC------ATCAAACAAAAGCTGCTCTCATATAAGGTATCATGTGTAACTTTCTTAGATTTTTAAGTCTGCGATTCTCAGCTCATCAGACCCAACATCTTTGTTTAtttgtttgttttgaaacaggatcttagtctgtactccaagctgacctgaaactatatacagcccagggcacccttgaactagtggcaagccttctctttaagcttcctaagtactgcaattacaggcatgagcacggcgtctgattAGAACAAAACAAACTTCATAACCCTTCTCGTACAATCCTGAACATTGACACAAATAATTTGTTAGCTACATACATACTTGT-GCATAGTGATATAATGTCCTAAATACACTTTACAAGAGGGAAAAGAGAGATTGGTTGACAGT---GTGCATTTCGATACATAAGATTGGAAAGCATGATGG-------AGATGCTTTCGTCTGTGCTTAGACTCAGAGCCGTAAGC-CCCTGGACTAGTGATGCGCTGCTATCTCAGGACTATTAGGAATGTG--TTCTCTCTTTGTCCACGtcttggcaacgttctgaagaag-acaagatatagtcctccct-tggtttacatggaagctgtaaattcatgggaaatttagtgtctgttaaaattaagcaatggagtatgtaaattggagtcaggtttcaggctgaagtaattataaacaggttcccttgcaggaacagctggcaagacattcagaagttatgtgg--------gacactgcctg-------atccttt-------------------atcatgtgggg------------------------------------------------------------------------------------ctgtgttgggtataga------tgtctaatatctttgactctaacccaatattgtgacatctgggaaattctgacaagagtcccaaggtcctccatagga-gacatatgaccacaattgagaaccattgGGCTTGCCAACTGTTTCGAAACAACT------GTGCATCAGAAACCTCCTCAGAGCTGCTGACCTCAGTTCTCTAGTCTTGAGTACGCTGAG--AAGACCTTGACTGAATCCTTGTCTTTGAGG--TTAGTATAACCCAGAACCAGGGCTTAAAGTTGGATAAGACCATAGTCTACGCACTATTCAACCTTACAGTTCAAAGTGCT-------------AAGCTTCAGTTGTGCAGATGGAA-GCCAAGGG--TCCCTGGAGCCAAAGAACATGATTAGGAAGCAAAGGCA-----ACCAGCTTTCTTC---------TCAGCATCATGTG-----------TTTTAAATCCATTGAACACAAGGGTTGACACTAAGTCTGTCCA-CTGCATGCAGCATTGAAACTTATCCCCGAGACTCTGTTCTTGTTTCTTAGCCCCACCTTTTCCT-----------TTGCATCCTTCCTAACACACAGGCACAACAGGAAGGTCCCAACCCTAATCCATCTTTCTCAAACCCTCAACT
s HiC_scaffold_1 130305846 2107 + 233722169 caagATCTTTAggtattcttaaaatatttctccaGCTTCTGTTAACAATCGCCCAGTTGACATGTCCCTTATGAACTTAAACTTTTGTGCTTCT------AAGTGATAAACTATGTGAATGTCAGATC--------CAATGTAGCTCTCACCATTCAC-CCAGGCTTTTTTCTCAAAATCTAGCAT-GAAACCCTATCTC-------------CACTTTGAGCCAAATGTATTA-ATGCATGCTAAAACCCCCAACTTGGAGGTGGCTG------------GGTTGCCCTCAAAATTCTGGCCTGCTACCTTGAGCCTAAAATGTCATCTACGCCCAGGTTTGAGGTACCAGCTTTCAACTTGGTACTTGTGTTTCTGGGCCCCAGCCACGGTCATTTGAGCTCAGACTTTGCTCTTGCCTGGCCCCATGCCACAGAGTGGACTCTCCCC--TCGTTCCTAGGCTGGTCCCAAGGGCCACATGCTTTGCATTCACTTGCTTTGCTTCTGA-CATCTCCTGCCTGCCTGACCTT-AAGGCATGTGCTCTCAGGATCCCACTCCTGAGGCATCCTGGATACCCACTACCACATCTTGGGCCATATTTACAATTATTTGTAGAACTCTTACCTCGAAGATGTCAGGAATTATGCACTCTCCCAAGCCACCAAATCAGGTTAGGCCAATGGCTGGGATGTGAAAGAGTATATGATTCACAGAT-ATTGTGTCTTAAGCATGCTTGCATGGTGTCTGAACCCCTGCATGCTAATCATAGAAGTTGAACA-AAGAGTCACTGGTTAGTCCAGtgtagaaataagataaaaaatagtCACTCACAAGATGTCACATCAAAGTTTCTTATGTTTCTAACTCTATAGTTCTCACCTCATGGAACCAAGAATTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------TCATAACAA---ATACTTTGTAATCTCCCCTATAGAGTTCAGAacatatatgt-aataatatactACCCaggcacatatttttaaaatattgatctaacactttaaatatatatta-aggataaaaaagggaaattaatgcacaataaaatgtatttaagtaTATACATTTGGAAGAGGTGATGAAGTGGTCAGATGCTTGCATCTATATGTGGAACCACAATCATAAGTATCACTGACATATCAAGCAATATTGCTTCAG--------GTGATGTGATTTGTTCCAGTGTTCAGTTCTTTGCAGAATTccgagaaggaaaaaaatatagtgTTCCCTCTGATTTACATGGTAGTTGTAAATTCATGGGAAATTTAGTATGCATTAAAATTGGGCAACAAAATATGTAAGTTGGAGTTAGGTTTTAGACTTAGATCATCACAAATAGGCTTACTTATACAAA-GCCTGGCATGGTATTCAAAAGTCATATGGTAGTAGCAGAGCCTGCTTGTAATCCaacactctgggaagttgaggcaggaagatcacttgaggccagactggactactTGGCAacttagaccttgtctcagaaacaaaaagtcACATAGGTTGCTGCAAAATCTTCTCCGCAGAAGACTGTCCTGAGACTAGGAGAATTTGTTTAGTATCTCTGGTTTTCACTCTGTATTGGGACATTAGGAAAAAGATGCCAGGAATTACACAGCACTCCAGAGAAGGAAGTATACTCTCCATGGAGAG--ACCGACCTTACCTACTGACCCGAACTATCTCAGGTAGCGCATCA-------CTTTTGACCTTCAGACCTC---------------------CTGAGGAAAGGGCTGAGCTGAGTAACTGTCTTTGTGGCATTGTCCTATTCCACTAGCAATGGCCAAAAGGGACTAAGGCCTTGTTCTCTGCACTGGCCAATCT--CAGCCTGGCATGCTGTGAGGTCATAGGAAGTTTTAGTCATGCAGTAGAAATACCGAGGGGTTCCCTCTAGCCAGTTAATTAGATTGAAAAGCAAAGCTATCAGCACTTGCTTACTGCAAGTTATGGTCTGTGTCACATgctcattttgctctttaaagcCACTGAATTTAAGGGTTGATGATCAGTCTGTCCCTCCACAGAAAGCATTTTGACTTATCCCTGATACTGTGT--TTGTCTCTCAGCCCCACCATTTCCTTCCCACAATTCTTACACTCCTCCTAATGCACATGCACA----GAAATGCCCAACGCCAGGCCCTCTTTCTCTAACCTTAGATT

a score=114912
s chr3           144140502 3827 + 160039680 [encoded data, 4250 characters]
s HiC_scaffold_1 130308525 3876 + 233722169 [encoded data, 4250 characters]

a score=123928
s chr3           144149659 5819 + 160039680 [encoded data, 6261 characters]
s HiC_scaffold_1 130314019 5535 + 233722169 [encoded data, 6261 characters]

a score=5509
s chr3           144158716 271 + 160039680 TTATAGCAAGAGTATAGTCATATACTGCCTAGTGGTGTTTGTAGATTTGTTGGTAAAAATACATCGTTGTGTGATTTCTTCACGCC---AACATCACAGGCGTATTTACCTAAGTCTAGATGGTAAAAGTCAATCAGTCAACATGATCTCTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCCAGGGCCGCTGTCAGCATAACATGATATACGGTTCT-ACAATAAACCTGTTTTTAAGAAGTAGAAGCAGTTCCCTCTAACACAACAAT
s HiC_scaffold_1  84854683 268 + 233722169 ttataatgAAA-TACAGCCATGCACTATTGAACTGTGGAGGTGGATTCTT----ACAAAGGCATTGTTAGGAAATTCTGTCACTGTTTGAATACCACAGCTGTTCTTACACAGACCTTAATGATACAGGTCAATCACTAGGTATGGTTTTTTGACGTCCTCAAGAAATGAGTGAAACACAGGATGGAAGAAATTACTACTGGAGTAACATGCTATATTGTTTTaactgtaaatttttcttttacaggCAGGAGTG--TCtactaaaaataacaat

a score=7206
s chr3           144158729 251 + 160039680 ATAGTCATATACTGCCTAGTGGTGTTTGTAGATTTGTTGGTAAAAATACATCGTTGTGTGATTT---CTTCACGCCAACATCACA-GGCGTATTTACCTAAGTCTAGATGGTAAAAGTCAATCAGTCAACATGATCTCTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCCAGGGCCGCTGTCAGCATAACATGATATACGGTTCTACAATAAACCTGTTTTTAAGAAGTAGAAGCAGTTCCCTCTAACA
s HiC_scaffold_1 121535754 244 + 233722169 atAGTCCCACAATGCTTAATGACTGGGATAGCTTCT------AAAATGCATCATTAAATGATTTTGTCTCTGTGTAAACATCATACAGTGCACTTACACAAGTCTGTGTAGTATACATCAATCACTTGATATGGCCCTTTGATGCAACCAAGAGACACAGTAAACACAAGATTTATGAGGCTGATGCTGGAGTAATGTGGCATattgttttatagta-----ttttttagtAAGTAGAAGGATTACATtctaata

a score=5064
s chr3           144158729 218 + 160039680 ATAGTCATATACTGCCTAGTGGTGTTTGTAGATTTGTTGGTAAAAATACATCGTTGTGTGATTTCTTCAC---GCCAACATCACAGGCGTATTTACCTAAGTCTAGATGGTAAAAGTCAATCAGTCAACATGATCTCTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCCAGGGCCGCTGTCAGCATAACATGATATACG-----GTTCTACAATAAACCT
s HiC_scaffold_1 107000764 220 + 233722169 ATAGACATGTCTTGCTTAGGGACAG----AGATACATTCTAAGAAAGGTGTCCTTA-GTAGTTTTGTCATCTTGTGAACATGACAG-TGTATTTATATAAACCTAGGTGGTATGTGTCAATCATTTCATGTGGTCTCTTGATGCAGCTAGGAGACACAGTAAACATGCCATCTGTGAGGGTGCTGCCAGTGTAACAGGGCATATAATGATGTTTCACAGTAGATTT

a score=8223
s chr3           144158763 380 + 160039680 TGTTGGTAAAAATACATCGTTGTGTGATTTCTTCAC---GCCAACATCACAGGCGTATTTACCTAAGTCTAGATGGTAAAAGTCAATCAGTCAACATGATCTCTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCC-AGGGCCGCTGTCAGCATAACATGATATACGGTTCTACAATAAACCTGTTTTTAAGAAGTAGAAGCAGTTCCCTCTAACACAACAA------------------------------------TCCTTTATTCCCAAGCACAAAGTTCTGCAGGAGATTGTTGTGTGCACTATGTCTTTATACGACTAATAAC----TCAATGAGTTTATATCAGTATCCTCCACAAGCACGAGAGTAATGTGT---------------------GATGACAGGAATTTTTCAGACCATTGTGCTCTCATGGGAT
s HiC_scaffold_1  66555203 439 + 233722169 TGTTCTGAGAAATGTGCTGTTATTTTATTTAGTCACTGTGCAAACAATTCGAGTATATTTACTTAGTTCTAGACAGTAAAGTTCAACTATGTGACAGGGTCTCTGGAAGCAATCAAGAGATGTGGTAAACAAGAGATGCATGAGGGCTACTGCCAGCATAACACAGCATCCTGTTTTACAGTATActtcttttttagaaaaataataaatacatcctaaaataacaaaaatatagtaaatatataaacTAGTAATAGATATTTATCATTGCTATCAAGGATTATGTGCTGCACATAATTATATTG----CCATTCTTTTGTACAGCTGACAGTGAGGTAGATTTGTATACATCAGCATTA-CCTCAAACATGAGAGTATGGTATTTTACTATACCTATATCAGTAGGTAATAGGAA-ATTTCAGCTCAGTATAATCTTATGAAAT

a score=6325
s chr3           144158769 218 + 160039680 TAAAAATACATCGTTGTGTGATTTCTTCACGCCAACATCACAGGCGT-ATTTACCTAAGTCTAGATGGTAAAAGTCAATCAGTCAACATGATCTCTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCCAGGGCCGCTGTCAGCATAACATGATATACGGTTCTACAATAAACCTGTTTTTAAGAAGTAGAAGCAGTTCCCTCTAACACAACAAT
s HiC_scaffold_1  43796078 205 + 233722169 TAAAAGTGTATCATTA-GTGATTTAATTACATGAACATTGCAGGGGTTATTTACAGAAGCCTAGATGGTATAGATCAATCATTCAGCATAGTCTCTTTATGTAGTT-AGAAATACACTAAACATGGGAGATGTGAAGCTACTGCTGGCCTACCTCATCATACTACTTCACAGCAAAC----TTTTAATAAGTAGGA--------CTATACTACAACAAT

a score=5173
s chr3           144158835 156 + 160039680 GTAAAAGTCAATCAGTCAACATGATCTCTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCCAGGGCCGCTGTCAGCATAACATGATATACGGTTCTACAATAAACCTGTTTTTAAGAAGTAGAAGCAGTTCCCTCTAACACAACAATCCTT
s HiC_scaffold_1  29881873 151 + 233722169 GTATAGGTCAATCACCAGACATGATCACTTGATGCAACCAAGAGATATGGTAAACAGGAGATGTACAAGATTGCTGCATGTGCAGCACAGTATACTATTTTACAGTAAA-CTGTTTTC-CTAAGTAAAAGGA---ccacatatcaaaacaatgttt

a score=4383
s chr3           144158862 105 + 160039680 CTTCATGCAATCAAGAGACGAGGTAAGCACAGGATGCCCAGGGCCGCTGTCAGCATAACATGATATACGGTTCTACAATAAACCTGTTTTTAAGAAGTAGAAGCA
s HiC_scaffold_1  51881116 105 + 233722169 CTTAATGCAATCAAGGGATATGGTTAGCACAAGATGCCTGAGGCTGCTGCCGACCTAACACAGCTTACTGGTTCACAGTAACATTTTTCATAAgaagaaagaata

a score=148171
s chr3           144160732 5245 + 160039680 [encoded data, 5560 characters]
s HiC_scaffold_1 130331415 4912 + 233722169 [encoded data, 5560 characters]

a score=22430
s chr3           144166209 1117 + 160039680 TGACCAGTTGTTTTAAAACGAACAACTTGCTAATGAACTTCCAGCTCTTCTACCACCACCGCCCCCCCCT----------CCA-------CTGTGTGATGTTCGGGTGTCATAGGAGTCTGTGTGC--TGGGTTTAAACCCACACTTTGCTGACTTAAGCCCACGTTCAAAATTCCTTCATAGTTTGGCAGCCTTCTTCAAATGATTTAATCTCCCTGAACCACTGCCTCCCTCA-GCAGCACCAGACATGTGGCT-GTGTGGCTGA-CATGTAAGGAAACATGATGAAGCCTAGCAGAGGCAGAAGACA-GAGAGACACCTGACTCTCAGGAGGCACTCCACAGGTCAGGTCTTTACTATGTTTCCAGAGCAAAGTTCCAACCCTCTCCTTCCGG-ATGGAGAAG-AAAGCAAGCCACG-GGCAGGATGCAACAGCTGGTACTAGGAATGAAGAAGCCACATCAGGGGAGAGAGCCACCAACCCTCAGAGTCAGATGTGCTTTATGGATACAGCAATTTGCATCTTTGTCAAATGTTCCCTAACATTTTGCAAAAATTCCCCAAATGTCAAATTACTGAGTAATCCGCACAGTGCTGC-GATCTCGCCATC--CTGACTGACTCAGAACGTATTTTGGGTGTCCTAGACATTAATCCAAGCAAATGTTAGTAAATACGGAAAATCACAGCCCTGCTCACCAGTTCCCCATG--CTGTACCAGACTCTGCT-----TCAAAAATGAACCAATACCAA-----------TCTGCAGACCATGAAGCTA--CCCATCCAA------------------------------------------------------------------CATGACACAGACCCCCAAGAGCTGCCCTGCGGCAGGCCATGGA---AGCAC-----------ACAGGAGAGCAGGAGCCA-------------------------GGCTCTGCACCCCAGCCATTAACTCTAAGCTAGCCA-TTGGCTTTATAGAACATTCTGATTTGCCTTCCATAGCCT------GATTTGTCTTCAGCAAATACTGAAATGGTATATATTATACTCTTCCCTGGGGATCCACTTATAGGCAGAACCTCTTCCTGGAGGTGGGTTACAAataaatattttttatttaattccccgacgacacgctgtggcagaccccatatttgtgcccattttaaaggtgaaaaagttgaggctcagagtggtgaagtggcttctatgaagccacaggattagtgtattac
s HiC_scaffold_1 130337357 1203 + 233722169 TGTCCAGTGGCTTAAAACTAGAcacacagcaaaacaatttc----tttCCTCTTGCCACCCCTCCTCCTTGTGGGAGAACCCAGACGGAGCCTGATAATATTCCGGTAACCTGGGAGTCAGGGTGCACTGGATTGGAGCTCAC-CATTCAGGATCTGAACCGAGGTTCAAA-TTCCATCACAGC---GAAGCCTGGGGCGAGCTGCTTAACCTTC--GAACCTCAACTTCCTTTGTGGAAAAACAGA---GAAGCTAGTGACACTGAGCATGTAAGGTGCTGTGA------------AAGCTAAATGCCACAAGAGATACCTGACACACAGTAGGTGTTCCATCAAC--GTTTGTTATTATGTTTTCAGAGCAAAATTCCAACACTCACCTCTCAGcggggagaaataaaagaagccacgcTGCAGCATGGAACAGCTGGTCTAGGGACGGATGCAACCACATCAGGGAA-AGAGCCACTCATCCTCGGAGTCAAATGTACATTATGGATACAGCAATTTGCATCTTG--CGAATGTTCCCTAACATTTTGCAAAAATTCCCTAAATGTCAAATTAGTGACTAATCTATACAGGACTGTGGATCTTGTTATCCACTGACTGATTCATAACACAGTCTGGGTGTCCCAGCCTCCAGTCCAAGCAAATGTTAGTAAATAAGGAAACTCACATCCAC-TTCATCAACTCTGAAAAATCAGTATTAGCTTCTGCTagcaaggaaaaatatataaacctCAAGGCAAGGAAGTTTTGGAGTCGATTAAGTTGACCCCAGTCAAAACCTACCTGGCAAGGgctggggggttagctcagcggtgtaagtacctgcttgacaaactcaaagtcatgagtttgatccccagtacc--cccctaaaaaagctagggatttagctcatctggtaccgataaaaaagaaaaaaacaaacctacCTGATATTTAGAGAATGGAGCTATGCATTCCAGTCATGGATTCCATGCTAGCCACTTAGCTTTCTACACCTTTCCATAGTCTTCtcaaaggtcttttaaaaattta--tttagcagATGTTGGCAT-GTGTGTAATGT----TTCCCTGGACATCTACTTCTTAGGAGAATCCCTTT-----------GTACAATTAAG-------TGCAGAATCTCCTCA----------------ACCCAATGATTAttcccacttcacagatgaggaaactgaggctcatagAGGTGCAGTTACTTGCCTAAAGCCACAGTATCAGTAAGTTGC

a score=138823
s chr3           144172226 2918 + 160039680 cttcacgatgcagtgCAGGCCCAGAGAGATCAAAATACTTAGCCCAGCTTTCGCCACCAGCCTTAACAGGCCAGGGTGTAACTC---TACTCAGCCTAGTTTCTGGTTCTGCCGCTTGTTGCTC---TTCATGCTCACCTAACAGAAGTGCAAGCAAGAGTGGTGAACAACCTA-TCTGTTTGGCTTCAGAATCTTCTGGAAACACTTGCCTAAATAGCTATGATTCTTCTATGT--CATGCTGTTGATGGtattgctttatagcagatcacacccaatactcagaggcgtgggaaacatcaatattctactacatcgcacagttctagtggactcgactctaagaacagtttcaccaagtcagggtg-tctctggtaggtga----cagtG-GCTAGACTAGCCAGTCACAA---CTGTTTCTTCATGTAGCCTTATTTC---CTTCTCCTCAAAGGACATTGCCACATTGTCT---------AAGGTtggccaggttgcatggt------aagactcaagggttcaagagcaagt------------aggttggaagttacatcactctcatgacctt----ccaaggtcattcaactgtgtgtctgcatgcagcttattcataatgaatgag---------cacccagtgtaggttgaaacacacaca---cacctttatcaataggaactagtagggttctaga-gggcatgtttgtgcaagattctgcaacagccacctttggaaaatataccctgccccaTTACAGAATGGAGGGGAA-CTTGAAATAACTGGAACTATCAT-CCCAACATTAAAAGAAAATAAATGCACCAAAAATT-TCCATCTGATGCCAGAGACCACCCGCCCCCAAAAAGTCAGCATTCAGCAAGCTGCAGGGC-------------------------CACTGGTTTTGTGTTCCCATAAAAATGACCCAAATATTTGTCCGTGTTTATTGCAAATTTGAGAGCCTCTGCCCCTGTGTGAGGCAACGTATGCATCCATTATGACTGTAACTATGGGTATAGATGATTATATAAAAATATGCAAAACGAGATtcccgggtcaggcctttatgggctcctattcaacgtgggatgcatttttacaggccggttgtaaacccctggaaacag--gtttataacaggctcgctgacacagtgttatctatggcggcaagaacggAGGCTGGGTAATAGGCCTGTTCCTCTGTGGCTAATGCTAGCTTGAAGTATCTCTAAATCTCAGCCTTCCTTGCAGCAGGTACTTCAGTGAAATGTAACTACCACAATGCATCCTTCCCATGCAATTCGCCTGGAGCGTGGAGCAGAGGCACTGCAGCTCTCCCTAGCAGGGGTGCACAGGAAGCCGTCCTTAGTGATACTGTGGATAGATGAGGA----AGAGTGTGGGCAAGAAATGGACATCTTCCTCTAGGTCAGGATCCAATAGTCCTGACAGCTTGGGTGAACTGAGTCACAgag---aggaccgaagg-gatctatctggtgactcctcttgtt-----tctaaactcagaagctcagaggagtcacatgacttgtcctgggtcacacagatggcttaagGACAACCAGAC----TGTAAAACTCTTGAGG---TGTTCACACTGCTATAACCAAACTTTAATATGATTCTCCCTCTTCCCGCCCCAC-----------------CACCACCACCCCCCAACA----GTGGACCAGATGAAAATGGACTTGCCCACAACTGGGTAGCAGTGGGCTTTCTGGATAATATTAACTGCAACCCAGTTTTTTGTTTTTTTTTTAACTGTCTGTGAGACCAACTTGTTTAAACAGGAGAGGAAGCCCATGGCACAAAGGGATCTTTACGTTCCTCTGGTAGATTAGGAGAGGCTCCCAGTTAAAGAGTGTTCATTACTATTGTAAATTCTTGCCCCGGGGCTTGTACCCTTGCAGTAGATTACATGAGGTCTGTGTTCATGGACAACGTTTGGCGTCTGATTGAAGGTCCAGTGCAGCTAATTAATTTCATTAGGAAGTGAAGTCATCTTCTAGCAGGAATTAATATTTGGAGCTTCGTGTTGCTAATTCATTTCCAGATTTAATTAGCTCAGAGAAGAAATGTTGCTTGGGCAAGAGGACTTTTTAATTATCAGCTTGGATAAATTTGAAAATGTTGATGCCTAGGGGTTGAGTTAATTAAAACCTGCATTATTTTAACTTTAATTAGCTCCCATCTTTGTTTTGCTCCACCATATGGCCATGTCCTGTAGTCAAATTTAGTTAATTAAGCTAATTAAGCTAATCATTTTAATTACTCAAGACAATATGATTGGATAGAGGATGACTACAACTTTACAGCCAAGCACTTCTTTTTCATTAAGTTGAAGGGACAGAGTTATTTCTGATAGCGGCTGGCAAGCAGAGCTACGGAGTTCAGGGATGTGACAGCCTCAGAGATATTAAGGCTGAAGTCTAATTGCATTCCTTGATAAAAACAAAATGTCACTAACACAACTCTTTAAAAGCGGAGAATAATTTAGTGCTACATCTATTAGCATTCTGGACCGGCTGACTTGGTCAGGGTGTGCTGGCTTGCTCTTTTTACCCTAATAAGATAATGAAGTAGACTTACTGAGCTGTGGAATTTACTAATGGAGATTTAGGTATTAGATGGTGAAATCTTCATCTTCTCAGATCCGGGTGCccagtcgtacctgctagacttatagctctgtcaccgttcgtggcacaggcctgta-tttttagggggttcataactctgttggaaaacatttgctccaggctgaaagttggtctaagagggcccatgttagggatacttatttatagattgTGGAATTTTGGAAGGGAAGGAAGGAACGGTCAGGGTGGTTTTTATGCTGCTGCACTGGAGAC-CGAGTTTACTGCATTCGTAGTGTGCCTTCTCCTGGTCCCATCTCTATGCAACACTAATAAAGCCCAGCTCAATAAAGGAAATGTCTTTT--ATTTTCTTTCTTTG
s HiC_scaffold_1 130340931 2986 + 233722169 CTTGGTGATACAATGAAGGCCCAGAGAGACCAAGTGACTTCCCCAGGGTGCTGTCACTGGG-GGGCCAGGCCAGGAGACAGCTCAGGTTCACAGTCTGGTCACTGCATCCACATTTTGCCTCCCCTTTTCATGCTCATTTAGCAGCAATCTTAG----AGCCCAGAACAACTCAGTCTGCTTTGTTTCTGCA------GGAAACTCCTCCCCGAGTAggtattattcttttattttccaggtTCTGGTTATTATTTCTGCTTAACCAATTACCCCCACAATACAGAGGCTTA--AAATGTTAATAGCCCTCTG--------GCTTCTGTGGGCCAGGAGGCTGGGAGCGGTTGGACCAGGTTTGGGTGCTCTCCCACAGCTGCAGACCAATGCACAGGGCTGACCAGGCAAGAGCTTTGTCCCCTCA-GAAGCCCCGAGACAGACCTCTTCTCCAAGGTCCTCTTCCCACTTCCTCACCACCCGGAGACCTGCGCAGTTGAACTGCTTATTGCAGGCTCAAGAGTTCAGGATTAagtgtttaaaaaagaaagtcagaaCTTGCGTCACCTTTTTGATCTTGCTCCTGAGGTTACACAGCAACACTTCTGC-CGCATTTTACTGGTTACGAGTGAGTCACTAGCCCACCCAGCTTCACAGGAAGAGTAATCAGGCTCCCTCTCTTGATGGCGAGTGGCAAGGTTCTAGAAGGGCATGTGGTTACAAGATCCTGCTGCAGACAGCCCGACAAAATACAGT-TGCCACATCACGGAATGGAGAAAAAACCGGAGATGATCCAAAATGCTAtgtccaaaatctgaa--------atgcacTCAAAATTCTTCCCCTGGTTCACAAGACTATCTGAAATGTAAAAAGTGGCATCCAGGAATCTGCAGAGCATAGCAATATAAGGCAGCAGTGAGCTCCTGGTTTTGTGCTTCCATAAAAATGACCCAAATATTTGTCCCTGATTATTGTGAATTTGAGAGCCTCTGCCCCTGAGTGAGTCTGCACGTGTGTCCATTAACACTGCAGCTATCGGTACAGatgattatataaaaatatgcaaaatgtgATTCCCAGGTCAGGTCTTTATGGGCTCAGATTCAATGTGGGATACATTTTTACAACCTGGCTGTAAACCCCTGGAAACAGAGGTTTATAACAGAAGCACTGACACAACTTTATCTATGGCGGCAAGAACAGTGCCACGGTAATAGGCCTGTTCCTCTGTGGCTAATGCCGGCTTGAAATATCTCTAAATCTCAGCCTTCCTTCCAGCAGGTACTTCACTGCAGTGTAACTACCACAATGCATCCTGTCCATGCGACTGACTTCGCTCATGGCCCAGAAGCACCGCAGCTCTGCCCCAGAGTGGTGCA----AAGCCA--------GGGCCTATG-----ATGAGAACCACGCAGCGCAGGCAGGAAGTAGA-ATCTTCCCCTGTATCAGGATC-AACTGTCCTCCCGGTTCCATGGAACTGAGTCCAAGAATATGGGACAGCCTGTgccctaccccccccccccgccttttaTAGGTAGATAAGCAGAGGCCCAGGGAAATGAAATGATTTGTTGTGGGTCACATGGCTGATAGAAAGATCAGAAGACACATCTCAACATTCCTAAGGGTTTGTTTTCCCCATTATATCCAACTTCTGGTGCGATACTTTTTCTCTCCagcgcacgtgcacacacacacacacacacacacacacacacacttggtgGAGGGGGCTGAAAGTGATTAGTCTGCAATCCAGGAGCAGTATGCTTTACAGGTAATATTATTTGCAACCTA------------CTTTTTAACTATCTGTGAGACCAACTTGTTTAAACAGGAGAGGAAGCCTATGGCACAAAGGGATCTTCATGTTCCTGTGGTATATTAGGAGAGGCACCCAGCTAAAGAGTGTTCATTACTATTGTAAATTCTTGCCCCAGGGCTTGTATCCTTGCGCTAGATTACATGAGGTCTGTGTTCATGGACAGCGTTTGGCGTCTGATTGAAGGTCCAGCGCAGCTAATTAATTTCATTAGGAAGTGAAGTCATCTTCTAGCAGGAATTAATATTTGGAGCTTCGTGTTGCTAATTCATTTCCAGATTTAATTAGCTCAGAGAAGAAATGTTGCTTGGGCAAGAGGACTTTTTAATTATCAGCTTggataaatttgaaaatgttgatgcCTAGGGGTTGAGTTAATTAAAACCTgcattattttaactttaattagCTCCCATCTTTGTTTTGCTTCACCATATGGCCATGTCCTGTAGTCAAATTTAGTTAATTAAGCTAATTAAGCTAATCATTTTAATTACTCAAGACAATATGATTGGATAGAGGATGACTACAAGTTTATGGCCAAGTACTTCTTTTTCATTAAGTTGAAGGGACAGAGTTATTTCTGATTGCGGCTGGCAAGCAGTGCTGCGGAGTTCAGGGATGTGACAGCCTCAGAGATATTAAGGCTGAAGTCTAATTGCATTCcttgataaaaacaaaatgtcactAACACAACTCTTTAAAAGAGGAGAATAATTTAGTGCTACATCTATTAGCATTCTGGACGGGCTGGCTTGGTCAGGGTGTGCTGGCTTGCTCTTTTTA-CCTAATAAGATAATGAAGCAAACTTACTGAGCTGTGGAGTTTACTAATGGAGATTTAGGTATTAGATGGTGAAATCTTCATCTTATTATAGT--GGTGCCCAGTAGCGCA-GCTATACTTATGGGTCTGCCATCGTTTGTGGCACAAACCTGTATTTTTTTAGGGGTTCATAACTCTGCTGGAAAACATTAGCTTCAGGCTGAGAGTTGACCTAAGAGAGCCCATGTTAGGAATGCTTATTTATAGATTGTGAAA---TGGGGTGGGGGGGTGCAATGGCCAGGCT-GTTTTTATGCCACTGCTCAGAAGATGGGAGTTTACTGCATCAGTTCCAGGCTTTACCTTTGCTCCAACTCCACAAAGGACTGGCAAA-CACAGCTCAACAAAGGAAAAACCTTTTCAGTCTGCTTCCTCTG

a score=26813
s chr3           144175452 915 + 160039680 GGGAAAACTCTTTCCGATTTCTTCCTCCTTCTGCTTCCCAGTCACCACCTTGGCACCCCAATCCTTAGGACCTGATGACCACGGTGGCCTTTTCCAGATCCTCCCCACAACAAAGAAAATAA----GAAAGACAGTATCCTCTGCTTGACAAAAACCAAAAGAGCTTTTCTCAAAGACTTCATCCAACCTGCCTGGCTCTCCAGACACACAGAAAGCGATTCTTTGCACAGTTCGGGAGGAAAGATTTAAAATAACCCCTAGAGTAGTATTTGGAGAAAATAATATGAATTGTAAAAGTAGTTCAAATATATGTTTGGGGAGG---CTCTGGCCGCCTCGAGTATGTGCTTCCTAGAAAGCTGGT-TTTTGACCTGTAACATG-GGTATGCTTCCTATGATGAGAGTGTGGGTCCCAGGATGGGGAGATTCTCATGTTCTTAGGAATGAAGGATGGTTCACCAGGGGTCACTGAGGCAAAAATCATTTTAAGGAACTAGCTGTTATCCAGAGAAGATGAAGACAGCTGAAGGCGGGCTGTGAGTC--CCCCTTCACATTGGCTAGAAA-ACTGCGGC---------------TAGCTGCGCTTCAGAGTCCAGTAGACCTAGAATCCTGCAGGTGATAGGCcattcattcattccttcattcattTACTTGTTTGttcagtcattcaacgaaaattctctagtgccaggcagtcttctaggcatcctcagggatggggaaacgaatggggacaagatttcgagtcccagaactaatattctGTTTGGACAATGGAGGTTTTca------tagaggagtctagaatgttattgggaaatccagggaggctctttagaggaggcagcatcATGTGCAGATACAGAGATTTCAAACCAAACCTGTGTTGA-----TGTGTTAATGAGCATTACCCCAGAATCTAGGTTTCTGTCTT
s HiC_scaffold_1 130343888 890 + 233722169 GGAAAAACCTTTTCAGTCTGCTTCCTC-TGATGCTTCC-----ACCATCATGGACCCTGAATCC--AAG------------TGCTGGCCTTTTCCA---------CAAGCCAGAGACACTGACTCTTAAGAAAAAGATCCCatgct-aacagaaaacaaaaggactTTCCCCAAGACCCTC--CTAA-------GGCTCAC---ATACATGGGAACGGATTCTGTGTATGGTTcagaaggaaagatttaaaataacCCCAAGAGCAGTATTTTAAGCAAATAATATGAATTGTAAAAGTAACTGGAATATATGTTCTGGGAGGGGGCTCTG-TGGCCTCTAGTGTATGGTTTCTAGAAAGCTCATGTTTTTATCCATAACCTGTGGCACATTTCCTATGAGGAGCCTATAGTTCCCAGGATAGAGAGATGCTAACCTTCTTAGGAATGAAGGATGACCCAGCA-GGGTCACTGGGGTAAAAACTGTTTTAAGTCCCTCACTGTCATCAATAGAAGTCTAAGCTGTCTCAGGGCAGACTGTAATTTCACCCCTTCTCATCAGGCAGAAGTACTGAAGCTCagctagaaagagataacagcaGCTCAGAATGAAATCAACGCAGAATCCTCCaggtacca---catctttttatttatctatccATTCACTTGTGTGTTCAATAATTGAACAAAAATTTCCTGGTTCTGGAAAGT---------------AGGGATACCAAAATAACTGAGACTTACTCCTGCCTTCCAGGGATTCCTACTTTGTTTGGACAATGGAAAATTCCAGTCCAGTAGAGGTCTCTCAAGTATATTGGGGAAATCCCAGAGGGCTTCACACAAGAAGTAGCACTATCT-cagggaaagagataaaaaatgacaTCAGTGTGGAACCCTTATGTTAATGATCACTACACTGGAATCTAGGTTTCTGGCCT

a score=19515
s chr3           144176688 391 + 160039680 cTGGAATCT--GTTTCTTTTCTACAGTCTCCCTCTTGAGTTGGAGTAAGGCTCAAAGAACCGTTTTATAGACACCCACGATCTTCATCTTGTTTCCATACAAAGGCCATGGAAAAACTCAAAAGAGA-TTATACTTATTCAACACTACATGGAGTAAAGTGGGTCAAATGCAATTAAAAGACACTGTGGCCAAAGATTTGTCTCACAGAAAATGAAGGA--AAAAATAGCTCCTGACCTAGTGAAGTTCCTTTGATAAACTAGGCTGACTAATAACCGGGGACATTTCTAGAAAATGTAAAGAAAAATTATGTTACTCAATCCAGAGCTTGGGTTGCATTATTTTAACAGT-GCTAATGAGCTTTGCTAAATCTCTAAATTGTGATGTaagaaggag
s HiC_scaffold_1 130344756 397 + 233722169 CTGGAATCTAGGTTTCTGGCCTAAAACCTCCCTCCTGAGTTTGAGTAAAACTTGAAGACCCAGTTTGTAAGTGTCCATGATCTTCACCTTGCCCTCCTGCAAAGCCCAAGAGCAAATTCAGAAGAGACTTGAACTTGTCCAAAGCAACATGAAGTAaagtgggtcaaatggaattaaAATATGCTCCAGCCAAAGGCTTGTCTCACACAAAATGGAGGAGGGGAAAATGCTATAGAACTAGAGAGGCTCCTTTGATAAATGAGAGTGACTCACAATTGgagatatttttagaaaatgtaaagaagaaaTATGCTAACCAATCCAGAGCTCAGCTCACATTATTTTAACAATAGCTAATGAGATTTGAGAACTCTCTAGATGGTGATGGAGTGGGGAG

a score=67112
s chr3           144177591 2683 + 160039680 catgggcttggagcaaggcaaacccatcagtg------aaatcctgagctcagtcactgttaact---acttgattatcagataagtc------cttcctcCAACAGCCATGCAGTACAAAATACATGTTTG-ATCCTTTTAAAGAAAAGG----ACCGAGAAGAC----ACAAGTGTTTCTCCTGTGTAATGTGAAATAGTTAAAGCAATGTTTCCTCCT---GGCAACCAAGCATTCCCAGTATTCA-GAGTCTGCATGGTTTTAAGTGCACAGTACCAACACAGTTACTTCGTGGTAGACTAGCTGGCCTGAGGA-----GGCTGTGCTTAAGCTCTGAGCCCAATATGCTCTTCTGCAGGACACGGTGGTGACCTTGATaaggctctggcctcagagctgtctctgcccacaca-ttctagttgtgtgaccttgacctagttgcttaacctcGATAAGGTTAAT-------------------------------------------GCTAATCCCTCTACTTCCAGCTTTCCCCACTGCTAACGTGGAAATGGTAAGATCTTCC---AAGCTGCCTGCTGGGATAACATACACAAATGATGCCAGGTCCACA------------ATTCAATCCTTTTCTGAACTACCTTCTATCAACTGTTTGGTCTGAGTTTACTGAATCACAAATTTAGCCTAACATCTGCCTAACAGACGCATCATTTACCTTGAATTTTTAAAAATTGCATAATACATTTTAAACCCTAAATAAATCACTGGACTGGTACCCATCATGCTGGATCA---CACATCACCTCTCGTCACGATGCATCCACACATTGGGGCAGACATGCCATCAGTATGGCTA-AACCATTTTCAAAGTGAACACGAGGCCTTATAACTACATCTTAAATCGGAGAATTTATCATCTAATGTCTATATTCAGAATCCAACGAGTATTATCCTCAGACTAGAAAGCCCTGTTTCCTTTAATGAGTTACATGTAATGCACTggcaaatacagctgttattggtaaattcctatttaacagatgggcaaaataaggcactgagatgaaatgattagcccatggctaatatttgattagaaagacaaatttaatcagagctgccatttgacttcCCTTCAGGACCAGAATTAGATTCCAAGTGTTTCCTGCCT--TGGTTCGGGGCCCGTTGCACACAGCAGTTCAATGTGTGCTTTATTACATGCTC-----TTGGACAAAGGATGGAAG---AGGGGAACCTTTCTCCAGAGGAAGCAGAGCATCCCCGCAATCACATT-----CGCCATG---AATCTTCACGACATGTCACACAG--TGACTACTGCTCCTTCTCTGGCTGGAAAGATGGGAAAGAGACAGAGTCTACTGTACTAATATAC----AATACCCACACTAGCAAAGAGAACCCAAAGGGTAAAAGTCCTGAAT----TAGTCTTAGGATGGGGCCTGGTCATATACCTTGGGAAACAGAAGGTTCTTCAGTCTTTATGA-ATGCAAGGA---CAGAAAGGTGGTTTTTCTGGA---GAGGTAAGAGGCACAGAAG-------------ACAGTGAGTAAGTTAGTAGTGTTTCAAAAATT-----------------CCCCAAGTCTTACCAGGCTCAATCAACCAACTGCCTGACCACATTTTGTTTTGAAATATGATGTCACAAACGTGTCCAGAGATGGAAAAAATACACAGTAATGAGTTCATTAGCTTGCCATCTGCATGTAAAACAAGGGGATTCCAGAGACAGAGTCGTTTGAATTTGCTATTGGAAATCAAACTCCACGCCAGAAAAAAAGAAAGAAGGAAAGGGAAgagggagggagggagggagggagggagggagggagggagggagggagggagggagggaaggagggagggagggagagaagggaaggagggagagaAAGAAAATAGAGGTCACAACTTAAAGAAAAAAATTATATACTGCTAGACCTCG--ATTAGCCAGCCAGTCTATCTTACAGGGCCTTTTGGAGCTTCAAAGCCAGCCAGAGTC-------TTTCTCCTTCTTAAAAGCAGCAATAGTAATAATAAGCTAAACATGTTTCATTATTTAA--GAGGCTAAAACACAATTGCCTACAGCAGGAAGTGGC---TGGAAGTTTGTCAGTTACATCTATTCCCATGAAGGAAGGTCTAGCTAAAGACTTGTGACTCAGAAATCCATTCAGGACCACCTGCCCTTTAAGATT---------------------------------CAAACCTCCAAATTCAA-------------------CCGCACCTCCCCTGCCTACACTTCTG-------------------TCTTGGAGAGTGTCACTTTAAATGTACAAA--AAAAGAGACGTTTCACTGCAACAGTATGTCCAGATACCTTCCAAACCACGGGAGTCCGCTTTC------TGATTCAGTTTCCATCTCGTTTCTGCTTTCCCCAGGCACACCTGAGACATGTCACC------------------ACTTTCAAAGACCACCAGCACTACCATTATCTGAGA---CCTAAGGTCACAGCCATGCCCAGGCTTTC-TGTAC-CAAGAGCACAGATCGAGTGCTACCGTCCAGGCCAACAGTGCCCATCCACAGGATGGAGCGTCTGCTTGACAAC--AAGGAGTAAGATAAAGCCATTGAAATGAGGCCTGTGATCAGGCACCAGTGAGAAACATGTCTG-----CTCATCTCTGATCTGCCCTGGACCCTAGACCCTCAACCCTACGCCAAGAGCCTGGCAG-----------GTTCTTCatct------------gtctccc-------------------------ttctccccttatttctgtgatagattttcttcgtataaagctaaaggggggagaaggaagtggaagaagaaggaggaagaggagagaaaaaaagaaggaggagaaa
s HiC_scaffold_1 130345550 2794 + 233722169 CATAGGTTTTGTGAGAATTAAACAAGTTATTGCATGCAAACTGCTGAGCTCAATCATTGTTAGCTCTAACTGAATTACTAGATaactctttctccttcccttaatAGCCATGAAATGAGAAATACATGTTAGTAACCTTTTGAAGAAAGTGTGTTGTCAAGAAAGTCATTACCACTGTTT-TCATGTGTAAACAACAATAGCTGGATCAATGTCTCCTTCCCACAGCaatcaaacatttttaatattcctaagTTAGCATGGTTTTAAATGCATAGCATCAATTCTATTATCTCGTGGTTGACTAACCAACCAGGGGACTCACAGCCGTA---AAGCTTTAACCCTCATACTTTTTTCtacaggacaccatggcaccctTGATAAGGCTCGGGGGTCCGATTTATCTGTGTTCACATAGCcctagctgtgtggccttgggttGGCTATTGAAACTCCCTCAGGTTAATATAGGGGTACCCACTCTCTACCCACTCTGTAATGTAGGCGTAGGGTACCCACTCTGCTTCCTGATTCTTTGGCTACAAAGGTAAGAATGGTAACATCTTCCTCAAAATTGTATGCTGT----ACACATGTAAAAGATGTTTGGCCCATACAATTAATAAATGTTCATTACTTTCCTGAGCTATCTTTTGCCAACCATTTGGTCTGAGTTTATGGAATTATAAATTTAGTGTAACATCTGCCTAACAAAAGCATTA-TTACCTTG--CTTCAAAATATTGCATAATATACTCtgagccaaaaataaatcatttgagTGCTATCCATTGTTTTGGATTAATCTACACCATCACTC------------CCCTCCATCAGAGAAGACAGGCCAAGAG-ATGGTTATAATCATTTTCGAAGTGTATTGAAGATTTTGTAATTAACCCTTATATCAGAGAAGTTACTA--TAGCATTTACAATGTGAA-------AGTGTCATCTTTGGAATTTAAAACCTT-TTACCTTTAATGA-CTACATGTAATGTATTGGCAAATATAGCTGTTATTGGTAAATTCCTATTTAACAGATGGACAAAATAAGGTAGTGAGATTAAATGATTAGCCCATGGCTAATATTTGATTAGAAAGACAAATTTAATCAGAGTTGCCATTTGACTTCCCTTCAGGACTAGAATTAGATTCCAAGTGTTTCCTGACTCCCAGTTTAGTGTCTGTTTCACACCGCAGTGCAAGATGTGCTTTatgacatgctttaaaatttaaagggggagggaagggcaggggTACCCTCCTCCTAAGAGCACAGAGCA---CAGGATACAAGGTAAGAACTCTATGTTTCATTTTCATGGCATTCTATGTGGGATGAGTGCTAGCTCTTCTTTGGTTGGAAAGATGACACAAATATAATAATAAC---ACAAGTACACACAAAATGTCCATAATA-CCTAGTGAATCAAA-----GCAAGCCCCATATTTCCTAGTCTTA-TATGAAATTTAATCATGTACCTTGGAGGTCACACAGTTCTGTAAATGTCAGAACATACAGGGAAATCAAAttagtggctttttaaaaattggggcaGGGGTCATAAGAGTGTCTGAAAAGCAACCCTGAATAGGTTGGGAGcattttaagaattaattttttaacttagTCACCCAGTTTTCATCAGGC----CCAACCAACTGCCcaaccctgttttgttttgaaaaataatgtcGCAAATGTGTCCAGAGCCGGATAAAATGCAGCGTAATGAGTTCATTAACATGCCATCAGTATGCAAAACATGGGGATTCCGGAGGGGAGATCCTTTggtgggcctgttggaaatcagaTTCCAggccaaaaacatataaaa-------------------------------------------------------------------------------------------------------------------------tacaattcaaggagaaaaatatttca--gctaCACCTCTTCTTTAGCCC-CCGGCAAACACTGTGTGGTTTTTGAAGGTTCCAAAGCCAGCCAGAATCAACCAGTTCCCTCCTCTGTTA------------------------AAACATGTTTTACTACTTAAAGGGGGTAAAAAAACAATTGCTTTCAGCAGGAGGTAGCTGATGGAGGTTTGTGAATTGCACCCA-CCCCATGAAGAGAGGCCTAGCTAAAAACATCAGTGTCAGAAATCCATTTAGAA-TGCCTGTCCTTTGAAAATCAGGGCTGTTTACCTGCCTGATTCACTCACTAACAAACCAAAAAACTCAAACTTGCCTTTTCCCCCTCTTCCTACCCCTGCTGCCCATGCTCCTATGGAAGTAAAGGATCAGATTTCTAGAGGACATCATTTTA-----ACAAACCAGAGGCAATGTTTC-TTCCGACGGGTATCCCAGACTTCATCGGGAACACTGAAAGCTAGTTTCTTTTTGTAATGCAATTGTTATTTCACCTCTGTTCTCCCC-GACACACCTGTGAAGTGTCATCAGATGCTGTATTACATTAACTTTCAAAAAGTGCCGACACTGCTAATGTCTGAGACCTCCTGATGTCACAGCCTTACACAGGCTTCCAAGTACAAAAAAGCGTAGTCTGAGTTATACTGTGCTGTGTAGCAGCACCTGACAGTAGGGCAGAGGATTTTGATGATggttaatgaaacaaaataaagcctttgAGATGAGGTTTGCGA-CAGAC---------AGAGATGTTTGGGGAACTTCTGCCGAATTCCCCGTGTGCAGGGAGACCTCAACCC--CTCAAGGAACAAGGCAATTGTTCCTACCTTTCTTTAtccaaaatgatagaaatttccCCATAGcctagaatttcagaaaatatttctttctaaattcCACGAACATCTATTCCTAACCTCCAacagaaaaggagggaaggaaagataaaaggaagaaaaaacagaaggaaggaatggagaaaggaaaaa

a score=28110
s chr3           144181427 713 + 160039680 ACTGTCTTGCTATTTACTACTGATAGTCCA--CATTCTAAGTACAT-----TCACTCATGCGTGTTTGCTGGAACTTTCCAACTTAAGGAGGCTATGTCTATAGCCATCTGTATCCACGGAGAAGGGCGATTTAATCTCCGGGGTGA-AATAAATGC-TATTGTCTAACTTTCATCTCATGTTGTACATAATAGAATAAAAGATTAAATAGATAGCTTGCAAAGGGTCACTGGGTTGTGAAACAGTACAAAAAGAAAGAAAAGAAAATTATGGGTGTTGGGGTCTGGGGCTTTGGCAGCAAACCCGTCATAGCCCCAGATATATATAATCTAGAATCTTATATATTCTAATATATTATGTATATGAAAGTAAGAGAAATATT-TTTGGCCTACCA-------CAACAT-AAAAGAATGTTTTATTAAAACGGAC-TGCCTTTCTCCTTAACTATTCTGCTCTTTGTAATGAAAGCAACTTGGATCTAATGGTGCGTTACAGTGATTTATTTACAAATCTTGATATCTTTTTGGACTCTAGTAATTAATGGGAGAATAGGAAGAACAGCCAACAAATTTTTTTAAAATCAGCTTAGAATTCTGTTTGGATGTAATTAAAAGTATAATCTGTTCCATTTGAATACTTCAGTGCTCCTCTATCCTAAAACAACGAACACAAATATTGGTTTTTTTCATCATATGTATGCTTTTCACATATGCTAAGACAAGTAAA
s HiC_scaffold_1 130348590 671 + 233722169 ACTACCTTGCTATTTATTATGGATACTCtagttttttttaatccataGATGTGATCTCTGCATATTTCCCAGGCCCTTGCAACCCAAGGA---TATATGTGTATCCACACGTATCCAATAAGAAGGGTAATTTAGTTTTCAGGCTGATAAAAAACACATACTTGCTAACTGTCATCTCATTTTGCACATA---GAATACAAGATTAAA-AGATAGCTTGCAAAGGGCCAGTGAGCTGTGAGATATTCCATGAAATAGCATAGAAAAATTATGGGCTTTGAGAACTTGCACGTTGGCACCAAAATC--CATTGC-------------AGTCGAGAATCt------------------------atgcaaggaaaaaaaatcttctttggTTTAACCTTTAAATCAACatcaaaaaaatgttttactgaAGTGGATACATATTTTTcctgaactttt----tctttttaataaaagcaaCTTGGATCTAATGGTGTGTTACAgtaatttatttacaaattttgaaATCTTCTTGGACTCTAGCAATTAATGGGAAAATAGGAAGTACAgccaactaattttt--aaaa----ctcaggatT--GTTTGGATGTAATTAAAAGTATAATCTGTTCCATCTGAATACCTTAGTGCTCTcttatcttaaaa-aacaaacgtAAATATTAG-TTCTTTCATAGTAT-TATGCTTTTCACATATGCTAGAGCAtgtaaa

a score=927002
s chr3           144184485 20240 + 160039680 [encoded data, 21632 characters]
s HiC_scaffold_1 130350343 20344 + 233722169 [encoded data, 21632 characters]

a score=220657
s chr3           144205011 7332 + 160039680 [encoded data, 7866 characters]
s HiC_scaffold_1 130370922 7150 + 233722169 [encoded data, 7866 characters]

a score=257754
s chr3           144219606 8600 + 160039680 [encoded data, 9279 characters]
s HiC_scaffold_1 130383006 8355 + 233722169 [encoded data, 9279 characters]

a score=3730
s chr3           144227037 84 + 160039680 TTTTTGCCCTACTTACCACTGTCTGCGAGCAAAACCAAGACCGAGCATTTTCC-AGAGAGTGGCAAACTGCACTTAGATGTGAAG
s HiC_scaffold_1 130390167 85 + 233722169 tttttattctacttattGCTCTCTGCCAGCAAAATGGCGGCTGAAGATTTTCCCAGAGCCCTGCAAACTGTACTGAGATTTGAAG

a score=48058
s chr3           144229018 1371 + 160039680 cacacacacacacacCCCAGTGGGG----------CCCTTGAATAACTACATGTAAGTATACTTGCCTCAACC--CTTAAGCAGAAGCAAATGCCAAATACAGCAGTATATGTTACCTACACTTTTGCACAGATAAAGAAGA---GCAGCCTTAAAACTTG--CCCCAGAATCTGGAATGATGTGTCCTGATATATGTGTAAAGATGGTTACAGATGTGGCCT-TTCTCACCTGCTGCTCTCAGGAAAGATGTAGGCCCTCTCTGTCAGGCTGTG-----------------------------TGCTGCAACTGGAAGAGAGAGCTTAGC-TGTCAGGGACTGAGGCATCTACCATTAGAGTCCTCAGGATTCCATTTACAGAGTTTCTGCACTTTGGCTTTCTGTGGGGGAAA---TATGACTAGTAAATAAATAAGCAGGAGAGCG--AGGGGGAGCACAGACAAGCAAAACG-GGATTCTCTGGAAATTAAATAATAGATGCAAGCGCCTGGACAAAGAGAGAAAGTGTGTGTTTctgtttggctcgtgagacttgacaagattatagctgatggtggtttggctgtagAGTCAGAATTCGATTGTACGGTATTAATTAAAGCCAGAGGGGTTGGGATACCAGGAGTGGGAGGGGAGCCTGTGTTTCTAGGAGTCAGAGAATATTAGAGTTTGGCCACCAGGAAAGACTTCAAA-ATGTGAAAAACGTTTAAAATA-AAAGACCCAGGAAAACTCCTTTAAAGGCCTGTGTTGTGTTGAGGCCATCAGACGACATGCTTAGCAAGCCAT----TTCCCCGGGGTTCCCCACCCAGACAGTCACAAACTTGGAAAGTGCTTAACTTGTTAAATTAGGGAAGAGCGGA--------GACCTGAAGCAACAGCTCT--TTCTTC--------------CCACTAGGACGTATTGGTCTCTGTACCAGGATATGCTTTTAGCCATCTAAAATATTATTATTCTATCTCAGAGTGTTTCCCTATTCATTTTAACACTTTTTAAAACATGTTTCAGAGATGAGAAATGGAAGGGAAGAAGGGAAGCTGCCTTTTAAATCAAGCAATTTTCTGAGTTGTGAGTGGGAAACGAGAAAGGCTACCACAAACCTCCCCTTTGATGAAGCCCCAAATATAGAAAAGGAACAGACTCCACACAGACAAAAGGA----TTTCCACTGACTTGGGAGTGATATCTTGTTACACTAATGGCTCTTGACAGCTATCGTAAGGCCGTTCATTTGCAGTCTT-ATTACGGTGAG--CTAGACTCTGTAGAAATACGTCCTATCTCGAACCTCACCCTATCAGGAACGG------------CCTTCTAAACAAGGACATGGCCCAAGATCAGAAAAACTGG----------AGTGAAGAAGGAAGTTAAAATGCTATGTGTTGGATGGGATCTCACTTTCGCTTAAAAAAAACGAAAAG
s HiC_scaffold_1 130391644 1444 + 233722169 cacacacacaaagagcTGAATGGGAACTGATGTAACTCATGGGTACTTCGAAGTAAGTGTGCTGGAGATGGTCTGCTTAAGCAAAGGTTAGTATCAAACACAGCCGCTTGTGACACACAATGTTTTGCATGTTTCAAGAggaaaagcaacattaaaatttAACCTCCAGACTATGAAGCAATCTTTGCTACT-TGTGGGTGACAATGGTTGGAAGCACGCCCTGCCCTCTACTGTTGTTCTCAT-ACAGGTAAAG----CCTCTGCTTGGCTGTGGCagctttttaaattcttcctcCCCCAGATCCTACAACTA----AGAGTACTTAGGGTGCCATGAACTGGGGCATCTGCCATTAGAATCTTCAGTACTCAATTCACAAAGCTCGTTACCTATGgttttctttgggaaaaaaaatatgaaaagcaaataaataaacagaagggaagaaagagaaacacagaacaGCAAGATGAGGGTCctctggaaattaaatagcagaTGCGGGTAATAGAACAACAAGAAaaagtgtgtgtttctgtttgGCTTATGAGAGCTGACAAGATTACAGCCGATGGTGGTTTGGCTGGAGAGTAGGGATTTTATGGTACCGTATTAATTAAAGCCGGAGGGA--GAGATAACCTGAGCAGGAGGTGAGCCTGTGTCTCCA-----CTGA-AACACTAGGGTTTGGCCACCAGGCAAGACTTCAAATATGTGAGAAACTTTCAAGatacaaagatttaaaaagat--cTTGAAAGGCCCATATTGTT-----GTCATAACAGAACCTGCTTAGCATAACACACTGTCTCCACTGGTTTCCCATTAGGACAATTACAAACTCA-AAACTGCTTGACTTGTTAAATTAGATAAGACCAGATTGATCCAGGCCAGAAGCAATACCTATGCCTCTTCTGCATTTCCGTCAACTGCAGTTATGTCTTTGTCTCCCTCCTAGGGTGTGTTTTTGTCTACCTAAAACATTACTACTGCATTGCAGTGTGTTACTCCATtcatttgaacatttaaaaaaaaaagttgcagaaatgacaaatgggaaagag--agagaagttcCATTTTAAATCAAGCAATTTTGTGAGTTTTGTGTGGAAAATGAGCAAGACAATCTCAAACCTGTTCTGTGATGAAGCCCCAAATATACAAAGGGATCAAACTCCACATAGACAAAAGCATCTTTTCCCCCCGACTTTGGAGTGATATCTTGTTACGCTAATGGCTCTTGACAGCTATCGTAAGACCCTTCATTTACAATCTTCAGAACGGGGAGAACTAGACTCTGC-------CATTTTAAATCCAGTGTCTCCAGATCAGAAACAGGCAAGCTCGCCTCCTGCTATAGAAAGGACGGGACCACGGTAAGAGAAACCAGAGTCCATTTAAGTGAACCGAGAAGTGAAAAGGCCACACGTCTGATAAGATCtcatt-----caaagaaaaacagaaag

a score=259007
s chr3           144231371 10904 + 160039680 [encoded data, 11907 characters]
s HiC_scaffold_1 130393138 10844 + 233722169 [encoded data, 11907 characters]

a score=10428
s chr3           144242694 856 + 160039680 aaagaaaatattccccccccccaaaaaaaaaaaCAGAGTGCTATAACTACCTACGATGCTTGTGTGTACTGAGACATGG---GAGAA----CTGCAAAGAGGGATGGTTTTG--CTTCATTTTCAAGCCCTT---TCAAGGGTTTCAGGCAAGGCAATATTGGCTGAGGGAAGGGGCTAGCCTTTCCTGCT--TTACTCACTGTGACTTGTGCCTCCTTGGAAATGTCACAGCCAGATCCTTAAAAGGTGAATGACACAGGAGCCAAACTGTACAAATCACACACCCAGGCGAGGTATTGATGCCACCCAGAGCCCCCGGACCCTAAGGTCCTGGCTTGCTGGATCGCAGAGAAGCGCAGAACTCTAGGAAGCTTCTGCCTCCTCCCC----------CTGCAGGTTTGTGGCATC--GTGGCCACCACTCCCCATGTCTCCTCTGTGGTGCCTACATCTCCCTTCCCATCCCGGTCTTAGTTGTTCATTTGTCTGCTGCTTGAGGACCAAAGTCCTCATTGCTTAAGACCCTGTCAGGGGGCTCAGGTGAAGTAAATCAAGTAACACTTGAACAGAGGTGATCTGTATTGGTTAATTAAACCAGTTTGCACATGCCAGTAAACAAAAGGATATGTGCAGCAGCCTTTGAGTGGCATCTCTGAAACATTCAGATCCTAGG---------------CCCATTATCTCAACAGCTGCAAAGGGACTCTGTCACTAAGCCTGGCCAGCCAAACCTGCCTTTGTGGGGCTGCCAG-ACTTACAGCTTGGATGTCCACATTTCTAGAGAGCACAG-TAAAGGACCCTTCTTGCTGGCTATATTTGCGTTGTATAATAGGGAACTAGATAATTTTAAGGATTCCTTTCATGTGGTTATACTTTTT
s HiC_scaffold_1 130403998 766 + 233722169 aaagaaaaca------------aacaaaaaaaacaaattga-----------acgGTGCCTGCTGATACTTTCACAGGGCTAGACAAGACTCTATATAAAAGACAAGTTTTGAGCTTAATCTGAAAGCTTCTAGCTCAAGGGCTTCCAGCAAGACAGTGTTGG----GGGGAGTTGCTAGCCTT-CCTGCTCTTTAGTCATTATGAGTCAAGTCCTCTTTGAAGTGTACC-----GTTTTTTAg----------------------------------------tttaggctag-tcttgaatCCACTGgtaggcccagg-----------ctggccta-----------aaaatCACTGCATTC-------CTTCTGCattcatcctgcctcagtctcttgagggCTGGGGTtccaagcatgcaccaccacacatggTT-------GGAACCTATGTTTCCATTCCCACCTGGCTCTGAGATGTGCATAGCTCTGGAAC---AGGATCATGGAATTCACTGGGGGGAGTTCT---CAGGAGCTGGTGTGAAGTCAATCAAAGAGCATGTTAGTGGAAA-GATTTATATTGATTAGCCGAACCAGTTTACACAAAGCATTGAACAAAAATATAGGTGAAATAACCTTTGCATAGCATTGTTCAAA-ATTCAAATTCTCAAGAAGAAAAAGTtctttcccttatcccagtttTTGCAAAGGGCCTCTGTGTCTTA------------AAACCGGTCCTTCTGAGGCAACCAGTACTGGCCAACAGAACATCTGCCTTGCCAGATGCTATAATTACATGACATTTCT---TGGCCACATTTAGggcataaaataagaaattagattattttacagatttctttatttttgttagaatattt

a score=19674
s chr3           144252066 1049 + 160039680 AACAATATAATTTTTTTTT-----------AAGGAAAACTACATACAGAATGACAACTGGCAGCCTCTACCTAGGAAT-----------------CACTTTTGCTCTTTGTATCTTAAAATCTGAGAGACATTTCTGCTACAAAGGATCTTGGAGTCTGTTTGACTCATCCTCTGAAGTGAGAGGAAGACAGCGTGGAGAACTCCTAAGAAAGGTTTGCCTGATCTCATG-AACCAGTGGCTGAACA-AACCGGAAGCCAGGTGG-GTGACAAGGAACCACGTGTTCTCTGCATT---CCACAAGGCTTCCCTT--GTTCTCTAAATGCAAAGTGTAGAGATGTCACTACCCTCCTGGAGGACAGGACCACAACATGGTAGACAGCACTGTACTATGATCTGTCCCAGTGACGGCCAGTGACCCCTTCTCTTGGAGTAATAATTTCCT-ACTTTCTAAGTGGAGATGGTACTAATTGCCTTG------TAACAGGACTAACTCGAGGCACAAAACCTATACAAATATCTCACATTTTCGATCTGTAACAGACCATCAGGGGCCTTCTGACATGTGGAAACTCTCTGACCCAGTCCAACAGGATGGACCCAGACATTACATTCTGGTTACTCAACATGTATCTAGATTTATATATCTTT-AAAATTGAAAGACAGAAT-TGGTCATGACATGTTTGTATTTCCTAATTAATTGCTGGAG--CTCCTCATTAGTAGAACATTCCAGTGTCTCTCATA------CCTTTCTCCCTGAGTAACAATTTGAGAATTCTAGATTTTCACACAGCCAGACCTAAATGTGCATGCAGTTAGGAACTATGGAAGCTTCTTCAGTCCTCTATTCCTCAGTTTCTCATGTCACAGTGCAGTATGGTATATGGGAAACAGTACACCAGAGCTTGCTCGGCAAAACTGATTCTCTGGGGACAGAGTCAT----GGCAGGTACAGA-TCTTGAACAGGCTGGCCAGGCTTCTCTCGGGGAGGGTAGC-------------------------AACAGGTCTCTGGGGCTTCTCTGACCTCAAAATGCAGGTCCCAGGCCCCAGATCTTTCTGCTTGTATACCT-TAGCCTCTGAG-TGCTGTTGTATT
s HiC_scaffold_1 130407279 1035 + 233722169 aaaattaaagtttattttttaaaaaattaaaaggagcaTTAGATATTAGAGGACAACAGGTACCCTTCCCCCATCAACTTACGCAGCAACTTAcgcttttttgttctttttaaccCCAAATCCAAGACATGCTCATGCTAGAAAAGACCTCTGAGACCAGCTGGCTTATCTTccaaaatgaggaaaggaaagcCTAAAGAACCCCTGAAAACCGTTTGCCTGCTGTTACCCAGCCACCTGCTGGGTAGAACTAGAAGCCTGATTGCTTGACAAGGG-CCAAGTGCTCTCTCCACTGTCTCATAAGCCACCTCTACAATTCCAGAAATGC--------------CCACTGGCTGCCCGAAGGAGA----CAC-------TGGCCAG---TGTGTTCTTAACCGTGGCAGCCATGGTGAGTAGCTCCTTCCCTCTGAGCAGTAATTTCCTTACCTCTAAAATGGAGATAGTGCTAACCACTCTGCTGTCTTAACAGGGCAGTTGTGAAGCACTAAACCTCTATGAACATCTGGCATTTCTATGCTGGGGAAG----------------------GGGGTGACACACAGACAGAGCCCAACATG---------------------TGTTCGTTCAACATGTAGTCAGTATtatctgtctttcaaaattgggATACAAAATCTAGTCATGGT-------TCTTTTAAAACTAATTGCCAGAAACTTCCTAATTAGTGGGACATTCCAGGGTCTCTTCTCACCCCTCCTTACTCCCTGACCAACTGTCCAAGAGCCCTGTAGTTTTGCACAGCCAGACCTACCCATGCAGGCAGTCAGGAAGTATGGAAGCCTGCTTGGTCCACTATTCTTCTACTCCCTCT-------TGAAGTATGGT------GAAACCTTCCTGCAAAGTTT-------CAAACTGATTCTGCCAGAAAAGTGCCTCCCTGGTCCAGTCCAGATTCCTACCTAGACCTGCCTGACTTCTCCCAGGAAAGGAggccttattttctttcatgctgaTTGTAGCCAAGACCACCCCACTTCTCGGATCCCACCATGCTGTCCCTGTTGCCCAGCTCTTTCCACTTGCACACTTGGAGGCACTGAGCTGATCTTGGATT

a score=15959
s chr3           144253447 1103 + 160039680 AAAAAGCTCCCAATTCCAGCATTCAGGAGTTGCCACCATCAGAGATGGACAATCTCCCCCTGGGTTCCAATTTAGGAAACCTTAGAGGATTGATTATTCTGATTGGCCTGGTTTGAAGGCAGTGTCCACTCTCCGACCAATAAAGCCATGGCCAACCCTTGGGGAGATAAAG-TCATGCTGCCCAGAAAAACTCAGGAACACCTGAGTTGGTGCCAGCCCTGACGAAGGGGCCGTTGTGAACCAG---------------------------GAACCAACCCTGAGCAC-CTAGGGATGGAAGAGGCCGGTGCACTAACAGTTGCGTGCTGATTTCTGCCATTCTAAACAAGCTCTAAAGTACTGGGTCGGATGGGCTAAAAGCACATAGATTC-TGAAGTGGTTTTTCTAGTCACCAAAGAACTACATGGAGC-AATAAACACAGACTGCTTACATATATCTAGCCTTTTACTAAGCACTGA-AGGAAAGGGTGG------GACTTG---GAGAGATGATTAAATGCTGGCCCTCGGGAAGCTTAATCACTGTCG-GGTCACTTCCGATATAGGTGGATCTTGGAGATAGGCTAG-----------TCCCAACAAAATCCTGGGAGGTT--------------------------GGACACAGAGGGTTGATCTGTGGAGAGGATGG--GCCAGGCTCTGAGCTCCGCT--CTCCTTCCGGAATATCATTTGCCAAATCTCTTCTGCTCATAGGTGTGTTACA-TAAAACAGTATTTGGAAAACAaaaat--------aaaataaaataaaataaaataaaataaaataaaaAGTGAAGGGCGTAAGTTAACTGCCGATCCGTGTTAGGTCCTTCACTTTACTCCTAAGGACTCCAGCCAGGGCCCAGGAGATCAGCCCAGCCTATAAGCC-----TCACTGCCCCCCACCACCACCACCACACACCTAAGCAAAGATCTGGTTGGTGAGGCAGGCAG---CCCCATCCC----TCTCCTCCTGAGCCCAGGCTTCTGCTCTGCCACCAGC---------TCTTGCGTTAATCAGCCA-CCACAACCAAGAGGGCTGCTGTGGCCATTTGGAGAAGATGGCTCCCTCTTTTGGGT--------------------CATTCTCTAATAACCCAGCTAGCCAGTGGGGAAAGTGAAGGGCAGGAGGAGAGGAAGGCAGGGCACAGCCAGCAAAGCCGG
s HiC_scaffold_1 130409384 1108 + 233722169 AAAAATACCCTAAGTGTGGCATCCTGGGCATGCCACCATCAGAGGCGGACCGT------------------TTAGAAAACTCCAGG----TAAAGATTCTCATTATCCTGGT-------CATTGTGTACTCCTGGACCAATAAA-CTATGGCCAGAGCTTGGGAAGGAGATGATTGTGCTGTCCAGAAAAAACCAGGGAGACCCTTGTTGGTGCCAGTCCTGAAGAAGGGGGAACTGTGAATCTACCACCACACCAACAGCTGTCTCCTGCTGATTCAACACTCAGAACACGGGGAATGGAAACTGTCACTGTTCT-CCAGTTTC------ATTGTTAAAACCCTGAATAGGCTCTGAAATTCTGAGTCCAATAGACTAAGTCTATGTAACTGCATACAGTGATACTTTTAGTTGCCAAAATGTTGGCTAAAGTAAACAAAAACGAGCAACTTACATATATCTAGCATTCTGCTAAGTGTTGGCAGGACGGAGTGGAAAGAAGAATTGGAAGAAAAAAGGTTCGAAGCCTGCCCTCCAGGCATTTGTTCACTATCACAGTTATCTCGGATCAAAGGGGACCTTGGCGATCCTCTAGCTCACCAGAGTTCCCAGTGAATTCCTGGGAGGCCACCAAAAAGCTGCAGGAGTGGGTGAGGGCAATGGAAAGTTGTGTCATAG-GAAGCTAGCAGGCAGCCTCGGAGTTGAGTTTACTTTATCTGGAATATATCCTGCCAGATCTGTCTGTTTTACTGGCATTTCACATTAAAACAGTACTTGTGAAAAAAGGCTTCTCCTTCAGAA----------------------------------------GTATGTTACCCACAGATAGAGTTCAGCTCTCTTATTTTGCTTCTAGAGATTTCAAT----GCCCAGGAAG-----CCTGCTGATAACCCAGTATTCAGTGCT-----------------CACAGTCATGCTAAAATCTGGCTGCCCAACTAGACAGGGTTCCTAACCCGACTTCCTGTCC----CCCAGGCCACCGTTCTGCCACCAACCATCACTTGCCTTGCACAAAACAGCCAGATAAAACCA----------TGTGGAGATTTAGGAAAGAGAAATCATCCTCCTGAATTCATTCACTGCTCGACTACGCATTGGCCAGTATCCCTGCAGGAAGGTGGGGAAGG-GAAGATAGGGTGGAAAGGAA----------AATCAGCATAGCAGG

a score=44517
s chr3           144255096 1541 + 160039680 AGCTTTGGTTGCTGTTGTTGTTTTTATTCTTCCAAGGAAGAGGCTATGATGCAGCTGTGAGAG---AAGGATGAGAGACC----------------ATCCCTGGCAGATAGTAGGTGTTCAACAAACAC-----AAGTGGTGGGAACACAA-GTGTGAGTCACTGGGACACAGTCCCTTGTGTGTTTCTTCTGGATGTTCAAGAAGACATGCGAGTTAAAGATCGTAGAGTTTATAGCAGTATCTCATGGGCTATAAATCTCAGCAGTGCAGTCTTAAAAATCACCACTGCCTACTGAAAATCCATTAAACTCCATTCATAGTCCAGAAACCAG--GGCGGAAA--------AAAAATCCTGC-------AACTTCTGCCTGTGGCTTCTCTGCT--CGCCTTACCATTTCTTCTAACTTTACTCCAGAAAAAAAAAATCTCTAGGGAAATGAAATTAAGCCGTTTCCCAGATTTACTTTGCAAAATTAGTCCTGGGCTGGCCTTTAACAAGGCAAACACATTCTGCGGAGTCGCAGGA-ACAACAGCACAGCATTCCTGGACCGAGGCTTGGAGCCCATGGAGCCAGACAGGCTGAACAGGC----AGAAGACAAGGATGTGTGTTTTGTAGCAAGTGCTGCCTTCAAGGCTGCTTGTCCAGGGGCAGAGACCTCTCTCCCTTGCCCTCTGGTTGGACCTTGCCCTTTCCTGCTCTTGGAAGTGGCATATGTTTACTGTCCCTGC---GTGTCTAGGCTAGGGAACTGTTATTCAAAATCACTAAGTCAGGCCACGGTCTTATACAAGTTTCTAGAGACTGTCACCAGAGTGATACAGTGCCCCCATCTAAAT-GTCCCTCTTCTTGGAGTCTTGAGATGAT-GTGGCCTTTCTTGACACAGAAGCTGCCCGCCATGGTGAGTCACCC-ATCAGAGGCCCTGCTTGC---------------CAAGGACTACATGGCACAATTTGCCTGGAAATGAAGAAATTCCATTCTAAATCTGCATATTCATCATTCTAGGAAGATAAACACAGTGTAAAGCTAACTAAAATATTTAATAGTCAACATTTAATAATTCCCAGATCATATGTGGGACAAGCTCTCATACGGAGGCCACCGCCATACTCATAAATAGGAAATTATGCAGGCAGTGGTCAGGAAAGCTCTCTCCCCTTCCCATAATAGATTGTCTTTCATTCAGTGTGGGTTTCAACA----------GTTGCCCC-AGGAGAAAATAACGCCT----ACTCTATCCTTGCCTTGTGGACCAGAGGTCGTGGTATTTAG--CAGTCCTGGAATGCCC--TGTATCTGAGAGTTTCTTATCTCCCCGCCCCTCAAGGAGCTTTGCTCTGGTTTCTCTC------CTGAAAAACAAACAGTAGCTACGGCAATA----AAAAAATTATGGACAAAGTCAAACAGCCACATGAATTCGGACCCCAGTCAGGTAAGGATGCCTTCAGAAGGAAGTCCAAATCCGAAGCAAATCCTTAGCCTG------------------TGGCTTTGGACCTGAAAAT-GCAGCTCATTGGCTCCTGCAAGGG-CTAAGGGGGAC-ATTTTAAGAGACAAGGATCAATAGAAGCTCCTTCCACTGACAAATGGGTGGATTTC
s HiC_scaffold_1 130412098 1594 + 233722169 AGCACTGGGTCAAGTCATTAACTCCATCTCTCCAGAGAGGAGTATGTGGTACAGGAGGAAAAGCACAAGGTTGGGAAACCTAGTCTGTGAGTCACAGTAcctgacacacagtaggtgctcaataaacgtGTACTATGTGGTGGGATCACAAAGTGCAAGCCTCTTGTACACAGTCGATTTCGCCTTTCACCTAGTTGTT-AAGAGGACACTTTA-CTAAAGATGCTACAGTTTATACCAGCACCACAAGGGTTGTAAAAACTA--CATATAACATCAAAAATTACTACCACTTACTGAAAATCCATCAAACTTTCTTCCTGGGAGAGAAATTGGTAAGTGGGGATCATGCGGGAGAATTTTGCTCAAAGTAGCCTCTGCCTTTCACTGCTATTTTGTCAACTTGTCTTCCTCTCTAACTTTGCTCCAGAAAAAAA----CTCTAGGGAGATGAAATTAAGCTGTTTCCCagatttacttttcaaaattagtCCTGGGCTGGCCTTCGGCACTGCAAACACATTCTGAGCAGTCACAGGGGAGGACTGCATTGAATTCCTGGGCTAACTCTCAG-GCTCCGGGagccagacaagctgaacaaGCTCAAGAAAAACAGAGATGGGCCTTTAGTGCTAATTCCTGCTGTGCTGTCCGTCTGTCCAGTGGCATAAGCTGGTTTCTCTTGCCATTATGT----CCTCTGCTTTTCTTGCTATTGGTGAGAG--TGTGTTTGCTGCTCCTGCTCTGGTTTGAGGCTAGGGAACT----------------AAATCGGGCCACACATGCACTAACAGGTCCAGAGGCCATTAGCAAGTTAGTG--GGTTCCCAGTCCAAACAGTCTCCTTTCTTGGAGG-TGGAGGTGGCAGTGGTTTTTCTGG--------GCTGCCTGCTGCGGTGAGTCTTCCTATCAAAGGGTCCATCTGTAAAACCAGACGGTGTCAAGGCCTTGGCTTCGTCACCTTCCTAAGAATGAAGAGAttccattttaaatttgcatATTCATCATTCTGGAGAAATAAACACAGTGTGAAActatctaaaatatttaatagtcAACATTTAATAATTCCTCAGTCATGTGTGGGACAAGCTC-------GAAGGAGCTATCACATTCATACATATGTAATTATGCAAGCAGTATTCAAGAGAGCTATCTTTCTTTCCCGTGATAGATTTTCTTCCACTCACTGGGGTTTCCAATAGACTGCCACTGCTGCCCCTAGGAAGAGGCAGCCCCCCCCAACCCTGTCCTTTCCTTGCAAAGCAGAGATCAAGGTGCTATGGTTAATACTGGAATTTCCTTTGTATCCAAGA----CTTATCTTCCCATCCTTAAAGTTTTTTCCCATGAAATTCTccctaaaaacaaagaaacaaacaa-aataacagcaatgaaacaaaaaactgt--------tTGAGTATCCACATAAA-TAGAATCTGGTTCCGGTAAGAATGCCTCAGGAAATAAGTCCTCATGTGAAACCAATCCTCTACTTGATTCTTGCCCCAAAGAAATGGCTTAGGCCTGGGAAAGAGTAATCGATTGGTTCCTATAAGGGACTAAGGGAGATAATTTTAGGAGTCAAATGCCACTGAAA----TTTCTGCCAATAAAACTGTGGATTTC

a score=235926
s chr3           144257065 6397 + 160039680 [encoded data, 6881 characters]
s HiC_scaffold_1 130413693 6394 + 233722169 [encoded data, 6881 characters]

a score=12887
s chr3           144264489 411 + 160039680 TTCTACAGCTGAAGCAAGTCTAGGAAAAGGGTAGCCACTGCTGGTCTATTCCACAGTTTGCAGAAATAATGGTTGCTAAAACAAACAAACAAACCTGGAAGTCGGGCCAAGCCAAGGGAAAGGAGGGCATTGTAAGCAGAGCTCAGAGTCAACACTTGGGAAGAGTATTACCCAATCTCCAGATCTCTGAGCTCCAGTCCA-ACAAGCCATGGACACCCAGGGCAATGACATTTCCAAAGAGGCTCCAGTCAAGCTCTCAAATTCCTAACTGTATTCCTTTGGCTACAGAAAAATCAGGCCAAATGTGAGGCAATCTCATTTCCCAGTGACCTTGTAATCCCTTGTTCATTTAAACACTTCCTTGGGGCTTTGCCAAGGTCTTCAGTTTTCGTTC--ACTCCATCATGAAGGCT
s HiC_scaffold_1 130420426 391 + 233722169 TTCCACATCTGGAGCAAGATTAAGAAT-GCACAGCCATTCCTAGCCTGTTATAGATATAGCAGTCATGGTGGTTGCTGAGA---------AACTCTGAAAGAAATgtcaagcaaaatgaaaatatgacatTCTCAG--------AGAACTAAAAATTGGGATGACTGTTCTCCAATC-CTTGATCCTTAAGCTCAAATCCATAGACTTCAGGGACATCCAGGGCATCCACATTTCTGAAAAGACGTGAAGCTGGCTTTTAAACTCATGTCTATGT--CTTGGGCTACAGAAAGACTAGGCCAAACTTGAGGTAATCTCATTTCCTTGTGA-CTTGC-ATCCATTATTCTTTTGCAGACTTCTTTGGGGCTTTGCCAACATCCTCGgttttcattttgtcttcctCTTGTAGGTT

a score=62525
s chr3           144265491 2444 + 160039680 TTTTGTACAAGTTTTAAACATATTAAATATTTAAGCAAAGTGTTCTATAACAGAGACTATCCTTATATTCACCATCTGTTTTAAAGTTAAGAAGGTAGAAGGCTCGCACACTTGGCAAACATAAAAAGGAAGGATGGAAGGGAGAACTGTAGGCAGGAATGTTTCTCTTCTGGGATTGTCTCTCAGGTGCAGATGGGTAATTCTGGCTGATGCCTGCTAATGGAGGAGGCACTGGGCAGAGAGAGCCAAATCTGCCCAAATTTCACCATCTTCCAAAATCCTACTGTTTCTTAC----TTGGACTACTCACAGCACATGCCAACAAGCTGTGGTCT--ATCCACAAACACAACTCTTCTAATAGACACATTAAGGAATTCTTACACAATTGGGGTGGCTGCA-------------ACACAAGTAGAAAAGTCTTCCT----AATACAAAC---CATCAAAGTA---------CACATATGTAAAA--CAGAATTGTGATCCTCTAGG-GCATTCTAGCTATAA-----GGTCACCAAGGTGCTGCAATGCTATG-----------ACTTATTTCT-------tctcacctctgctttactctgcattggttttagttgaggcagagagtctcatcctgtgtaggacaggaagctaccagcagcttcaagtgtacaAGGACCTTTTTTTACCAAGGAAACCTAGAAAAACAGATACCCTTGTGGTTCCCAGAGAGCAT-TCAATTCCTCAAAAGGACTCTTAAGATCTTCTTGGGTCACTTGTTGACTACAGGGCCTCGTTATTTGATTGACAGCCCTACTAGAGTCTCAAGGAATGTGAGAAGGGCAGATCACAAAGGAAAAGA-CCTTTTACCAGAATTTTTAAAAAAAGAAAGAAAAACAGAGGCACCCTATCTTTGAACCTAAATCAGTAGCAGAAACTGTTGGAACTCATTAGCATCCCTTATCTCAACAGTGAGATCGCACCTAGCTTCCCCTTTGCTCCAAGTCCCACAATG-----TATGTCTGCATGGAGAGCAGACTGTGCACA---GGCTGTGTGGATGAGTTAACA---------CAGCTTCCAATGGTTTCTTCATTGCTGTAACTGGCCATTGTGTAAATAAGTAGTTACTGACTTGAGAACTCACTCCTTACTCAATAACCCTTGATGGGAAGCCATGATCCCTTCACACACTATTATAGAAGTCCATAATTACGGGCTTTTCAAACGGTTACTTCTTT-AGGCATTTGCCTGTAATAGCTCCTTCAAAGCTGTTAAGCTCTTATCATCTGAAGACCCAAGTAGAAAATATTTAGTTCACTCCTCATTGACCTAATAGAGAAC-AAGTTCGTCCCTAAGATGATGCCGTCCTCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGAGAACACACG---------CTCGGGCTTGGGCTATTTGGTTAGGAAATCCAATTGCCATCAGATGACACTCACCTCATTTAGTAATTAAATATTGACACTGAATGATCAGAGGTCACTCTCTCTTTGGTCCCTCCTGAAGGCAATCTTGTCCTTACTACTTGCCCTGATGTTATTTCTATCTAGTGGCCTTTCCTGTGGCAGTGAAATGCCAGGT---CCTACTGACTCCCGTGCATCTCATTCCT--------AAGCATAATCCTTATTTTCATGCAAAATGAGCTTTTATGCACAATGCACATTTTATTCCTGAAGAAGAAAAGATCAGGATCAGGGGATTCAGGCACCTGTCCCCATTACAGGCAACAATGTCATGTGATATGTGCTGCACTGTAATGGAcagatactcttcaatgtacaatgcagacccatcccaagg-aatccatcacaggttacaattaccctaagttagaaatgcattct-ctatacctgacctactgaacat-------------cacagtaccctggatagtgtaggccctttgactttgtggtcatgtggccgatcttgagctgtagttcactgccactgtccagttta---------------gcatcacattccaccttaccagcctggacagaaaggtcaaaacgtgtaattagatttctactacaaacatattgcttttgcaccat-------------------------ggtcaagtc--------------CTGCGTAtgccttagtctcctctgggtgctaggacaaactgctttagactagttaatttataga-aacaggaatttatcactcaaagttcaggaagatgaaatatcaaagatccagaatcacagaatgggtgtctaggg-----agggcccattccattctatatcacaagttctacatgtcgtcacgtggtgacgtggggaagaacactccccagcctccttctgaaagtcttcatcccctccttttccagggccccactctcagggttctgttgcatcctaaaggccctgcctcttgatagtatta-attaggggttaatattcaacatagga---actggaggagcactcacattaaatcgtaataTGATTTAATATATTTGATTTAATCATTAACAGTGAATGATCTCACATTAAAATTACTTAGATAGCATTTTTGAACAGATCTCAAAATCCACAATGAAATATGTCT
s HiC_scaffold_1 130420916 2711 + 233722169 ttttttgccagtgttaaa-atattaaatatttaa----------------tagagcGTCTCTTTGTACTAATCACATGGTTTAA------GAAGGTAGAAACTTCAAACATTTGACAAAGATa----gagaggatgaaaggaaaaagaatgagcaGGAAGGTTTCTGTCCTGGCATTGTCACTCAGGTACAGACAAGCACCTC--GCTGATTCCTGTTAATGGAAAAGGCATTAGTCAGGTAAACCCAAACCTTTC---ATTTCAGCTTCTGCCAGAATTCTAACACGACTGATGGAATTGGACTATTTTCAGCCGGT-----TAAGATTGGGTCCCAATACACAAATTAGTGTCCTCTGACAGATTC--TGAGGAATTCTTACACAGTGAGGTGGGCggtagagagaagaaaagaaaaaatcaggaacTTTATGCTCAGGAGCCCAAGCAGACATGACAATATGAGATCaacataaatgtaaaatgcaaGACTGGGAAGAACAAGGAGTGATCTAGCTTTAGTCATGGCTCACCCAGGTGCTCAGACAATGTGGTCCCAAGTCTATTTCTTTCTCACCATTTCTTACTTCTCTTTTACTCTGTGTTGGTTTTAGTTTAGGACAAGAGTTTTCCACCATGTGGTAAAGAATATCACCAGCATCTCCAAGCTTACACAA---TCATTTTACCAAGgaattctagaaaaa-agaaatgtctgt--TTTCCAGA-AGCATGTCAAATCTGCAGAAGACTCTTTGAGACCTGCATGGATTACTTGCTGATTGGTAAGCCCGGCCACTTGAGTGACATTCCTATCTGAATCACAAGGAATGTGGGAAGGGCAGGTCCCAAAGGAAAAGAGCCTTTTATCAGAA------------GAAAGGAGAACAGAGGCGCCCTCACTTTGAACCTAAATGACTAGCAGAAATCTTTGGAACTCATTAGCATCCCTTGGCTCACTGGAAAGATAGCACCT-----CTCCTTAGCTCCAAGTGCTGCAATGCTTTTTATATCTGAGCAGAGAACAGACCTTATACACTCAACTGCATGGATG-GCTAAAATCTGCTCAGCAGCTTGCAATAATTTCTTGACTGTCGTTACCGATCATCATGTAAATAAGGAGTTACTGACTTAAGAAGTCACTATTTACTCAGTAACCCTTGATGGGAA-CTGTGATCCTTTTACACACTGTTATAGAAGTACATAATTACAGACTTTTCAAATGGTTACTTCTTTTAGGCATTTGCCTGTAATAGCTCCTGCAAAGCTGTTAAGCTCTTATCATGTGAAGACCCAAGTAGAAAATGTTCAGTTCATGCTTCATTGActtaataaagaacaaaactcaTCTTTACAATGATACtttctcttcacttttctttcctttctttctttctttctccttctttctctctctttctttctttctttctctctctttctctctctttctttctctctttctttctttctttctttctttctttctttctttctttcattctttctttctttccttttctgtaccagaaatctaactcaggacctcatgtttgccaggtaagtgctgtgCCCAGTGCTAACTTTGTGTCAAGAACACATGGATGACCTTGTCAGGCTTGGATTATTTGGGTAGGAAATCAGATTGCTGAC------CAGCCACCTAATTGAATAATTAAACACTATCACTGAATGGTCAT-TGTCACTGTTCCTTCAGGCTCTTTTGAGGGTAATCCAGTCACATCTACTTGTTCTAACTTTATTACTATCCAGCAAAA-GACCTAAAAAAGTGAAATTCCAGGTGGGTTCTCCGACTCTAGCATGTCTCATTACTGAAATACAAGGCATACTTCTTATTTTAACGGGGAACAGCTCTTTGTGCATAGTAAATACTTTGGTCCCCTAGAGGAA---GTCACAGCTAGAG-----AGATGTCTGTTCCTAT------CAAGAAGATCACATGACATGCAACGCATTGCACTGTACAGAAGTTCCTCAAGTTAGAATGGAGTTACAACCTGAGGAAACCCATTGTAAGCTGGAAATAtcataaattttgaaagtttgTTAATATACCTAACCAGCTGAATATCATGACTTAGCAACACAGTACCCTGAAGAATG-------CTTACCCTTGTGGTCATGTGGGAGGCTAGGAGTTGTAACTCTCTGCCACTGGCTGGTGTAAAAGAGAGATGGTAGGTACCACAT----CATCCCCAGCCTAGAAAG--TGATCAAGATTTCAAATATGATATCTATGGTTTAGAAATCACTTTCACATCATCAGAAAGCTAAAATATCTTAAGTTGGACCAAACCAAATTGCAGACACTCTGCATCTGTCATAGTCTGTTCAGATTGGTA-AATAAAATACTATAGACTGGGCAACTTTTAAACAATGGGAATTTATTGCTCA------TGGAGGCTGGGAAGGCCAAGATCAAGAGGAACGAAAGATATGACTGAGGTCTGCTGGGAACTTCTTCTCGTAGATGGCAACTTCTGTGTATCCTTGTGTGGCGAAA-GAGGAAGGGAACTTTTCAGGCCTCTTTTGTAAGTCTTCATTGCATTCATG---AGGGCTATAGCT-----------TTGTGACCTAGA-----TAACTCCTAACACTGTCACAATGGGAGTTAAACTTCAGCAAATGAATTACTGGAAGA-CACCAAGATCTA--CACACCCTAACCACGTACATCTGACATAATCATT-ACATGAAATGCAATCCCATTACAGTTATTGGAAAACCATCTTTGAATGGGTCTGAGGACATGCAGTGGAATCTGTTT

a score=33104
s chr3           144271394 760 + 160039680 aaacacac---acacacaaatacacaTTCCCACCTAAGTGAGAGGAACTCTTGTCAGTAGCCCTATGCTTGAGGGTGGACTAGTATTCAGACTGTCTC-------------------AGGCTTTAAG--------CTTCCTGGTTCCATAGCTGAAAAAGCCTTTTG----GAAGACTTTATGTTTCAGGCCGTTACTCCTCCT-GCCTCAGTTTCTGAATCTGCAAAACAGGAAGAATAGCTCCAGGCACCTGTGAGGCCGGAGGGTGATGCAA-TGAACCAGGCAGCATTCGTGTGGCGCTTCGCATTTCCATGACTTCCGCTCTGCATAGTCTACTGCAGAGTAGTATTATTATTACTTCTGAAAATGCCAGCTATCATCCAAAAGGGTTATTTCAATCACAAGGCTTTCTTCAGGAACACTTCATAAAGGAAAAGCGAAAGCACGCACATTCTCCTTGGAACTATCATAATTAGTCCCAGTAACAGTTGGGCCTTTTTTTTCCCCAGTTCATTTATAGTCAGATTCTGCAAAATTGAAAACATCCAACATCTGGCCCGAAAAACTCATACAAAGACAGAAA-GGCCCACATGGGCATGGGTGGGCTTCGGTGGCATGGGAGACAGATGTGCCTTTTGCCTCAACTACTCTTCTCAACCTTTGGG------GGAGAAATTCAACTGAGTTCTCGTGCTTATCAAAACCCCAGTTTTGGGGTTTCATCTCTAATTTTTAAAA-TATTTTGTCGAG-TATTTATAAAACTAAAATTACCCCAGA-AATCTGTAGAAATCTTTTAA
s HiC_scaffold_1 130428132 781 + 233722169 AAACACATCTGATGCACAAAAGCAGG--CTCACCAGGGTGAGTGGAGCTCTCATTAGTGGTAATGTCCCCAGCAATGGGTTCCTAACCACACTGTCCCCGGGAGATAGTACTCAAGCAGGTTATAAGGGCCCAGCCTTCCCATGTCTATCACTGA--------TTTGCTCTAGAACTTTTGTGCTTTGTGCTTTcctttctcagagcctcagtttctgcatctgtaaaaCAGGGAGAATAGCTCTTGCCACCTGCCACACGGGAGGGTAATGCAAGTGAATGAGCCAGCATCTGTGAAGCATTTTGCGTTTCCATTACTTCCTCTCTG-AGGATCTG-----AAGTGGTATTATTATTACTTCTGAAAATGTCAGCTTTCATCCAAAAGGGTGATTTCAATCAAAAGACTTTCTTCAGGAGCACTTCATAAAGGAAAAGTGAAAGTGTGCACATTCTCCTTGGAACCATCATAATTAGTTCCAGTAACAGTTGGgccaatttttt-ttcagttcatttataGTCAGATGCTGCAAAATTGAAAACATCCAACATCTGGGCTGAAAAACTTGTACAAAGACGGAAGCCCCCCAAATGGGCAAGCATGGGCTTTAGTGACACAGGAGCCAGATGTACCCTTTGCCTCAACTACTCTTTTCAacctctaggaaaaaaaaaaaaacacatttgaaTTTTCATACTTACTGAAAACCA----TTGGTG-TTCATGCCTAATTTTTGAAACTATCTCTTCTGGCTAGTTATAAATTTACAATTCTCTCAGACAATC---AGAAAGTTCTTAA

a score=93241
s chr3           144272889 2319 + 160039680 atttgcacacaggctgagaaaaACCTGGTGGGGGAACTCCACGGAAGGGCTTTGTGAACAAGGATAAAGAGGGTGCGTTAGCGTTGCCTTGTTTCATGAAGAAGGGA-ACACCTACGACAAAACCTGATTACAAAAATCTCTCATTTTACAAGCTCTTGGTAAGATGCACCATCCTGGAG---AGGCTCTGCCCCTACTGATTTCCTGTGCCACGCATTTTCTGAGCAAAGACCTGGTTCCACTCCCAGAGCCGGGTTAGATAAAACCGGAAGGGTTTGTGTGCACGGCATTTAACTTTAAACATTTCTTCATGGAAATTTACAATGCACATAATTTACATATTCAATACCAGTGACAATTCACTTCTCCCATCTGAACAGGGCTTTCAACTATGCCACTTGAACTAAATTAATAAACAGTAATTACAGAATGTTGTGTGAGCTAGCTGATGATGTTGAGCAGATTCTAATCAACACCTTCTTTTAAGGGCCAATTAAAGCTGAATGTATGCAATATAAACATCTTTGAGTATTTAGACATGAACTGCAGAACAAGGTAAAA-AAAAAATTAAAATCTGAACAATTAGACT-GGGATGAGCCCGTCAAATCTGGGGAGACGAACCCTTTTGAGCCAGTCTCTGAAGCCATGTTAATTTCTTCAA---ATGAGATTTTTGTAAAGTAGTG--AGGGGCTGGGAGGACTCCCTGGACCAAACCCCATCCGTTTAGAGATCTCACCAGTATCCCCTCTCCATCTCCATATGCTTCGGGTTCCATGGCGTTGCTTTCTAAACCGCCTCAAACACTTTTCTCCTTAATTCGTGTGCATCTCAGTGAAAACTTAATCTCCATATTTCTGACTCATTTATGTATAAATCACTGACGTGCTATTCGGTAGCTAAGAAACCTTTCCCTAGGCCTCATCTCTGGCCACCCAGGTGCTACACATGGTATGGAGATTGCCCCAGGCTCCAAAATGGGAGCGTACATCCT---TAAATAGCAAACACCCAGATCAC--AGAGACGGAATTAGATGCCGTTGGGGTGTAGAGAGCGATTGGACAGCCCCTCAGCCCCT-----GCTAGCCTCAAGTTCTACTGTTATG---------------------------------------TGCAAAAAGGAGAGGTAAGGAGCCCTTTCAGCAATGGTCCAGAGCTCTGAGTAACGTGCACAACTGCACAAGTGATGTCCATCCTTGGGAGTGAGTGGGTTTTTCCAGGGATGGAAGGAAATGGGAACTGTGTTTCTTCACATGAGAGAGAGGAAGCAATCCCCCACCCAGGTCATTGTGAAGTCCAGCACGA--------GCCTGGTCCTAGTGACAGTAAGGATACACTCACTCATGGGCCTTGTGGCCTA----TAA--------TGCTTTTTGTCCTTAGATCCCAAGAATGCACC--------AACCTATGTTCCTCAGACCGA-CTCCTGACTTATATCACAC-----CAGTGCATGTCACCTCTTC-TTATAGGCAGACCTCCTCTCTCTT--------GGACCCGGTCTCATCCCTGACTATCCAAGTCAGACTTCAACTCAAAGCTCTCCTTAATCTCATTCTCCCCTTGCCCCCAGT-CCCACCCTCTG-----GTCCTTTCAT--CCCCATGTGTCTCTCTGTCTCTCTTGGTCTTTCCATTACTCCAGCTTCTTATGGTCGATATTGTGTGAGACTAGATCTTAGGTTGCTTTGAAGCATCTCTCTGGAGGGCTGACTTTCGTTAATTACCGATGGTTCTTATC---------TCTACAGATAAGTGTGCTTGT-CTCCTCTGCCCCCACCCTCAGGTAGATTACAAACAAGCCAGAGACAGAGATTTTGTGCGTC-CCAGAGCTTTGCACAGCATCCAGCATAGGACTATTTATGTGAGCAAGCGATAAATGAATATTTGTCGAATGAATATGAATGAAGCTTTCTTTAAAGTCAACAAAATGAAAGTCTCTGTTTGGCTTCAAATATTTTCTCAATAAAATTTGGAAGTATAATGATAGACTCTGGGCTAGAAGTCAAAATTTTAAGATAGTTTCTTATTTACTAGT-TCATATTAAAAGCTGGGGAGTGATGGAGCCATGGGACTGGAAGGGACCACTGGAAACTATTTAATGCCATTATTTTATGCTCGTTGGAGCAGGCTGT-------ACTTTCAAAGAGTGGTTGCTGACTTTTGCCCCATGCATGG----GACAGTTACCATGGTGATAATAGTAGC----AACTGACCGCTGAGTGTTCCCACCTAGAAGGAAAGGACTGTGACCCTCTTCTTCAAGCCTGGCTGGGACTTGGAAGGGACGTTTCTGTGGGTGCAAATGAGGGTGTGCTTGAGGACAGGGACCACCATAGAAGATGTCTCGGCCTTCCTGCTTCTCATCCATT
s HiC_scaffold_1 130429477 2342 + 233722169 ATTGCCACACAGCCTTCGAAAATCT--GCCAGGGAACTCCCGGGAAAGATTCTGAGAACAAACATAAAGAGGGAACATTAGTGTTGTCTTGTTTCGTGAAAAGGgtacacacatttaaaaaaatttgattaCAAAA---TCTCATTTTGCAAATTCTAGGTAAGACTC-CTGCCGTGGGACCAAGACACGGCCTCTGATGGATTGCGGCTCCATGTGGTCTCGGAGTGAAGACCCACTTCCACTCC-AGGGCGGGGTTAGATAAAACTATAAGGGTTTATGTGCGCAGCATTTAactttaaacatttcttcatggaaATTTACAATGCACATAATTTACATATTCAATACCAGTGACAATTTACTTCTCCCATCTGAACAAGGCTTTCAACTATGCCACTTGAACTAAATTAATAAACAGTAATTACAGAATGTTGTGTGAGCTAGCTGTTGATGTTGAGCAGATTCTAATCAACACCTTCTTTTAAGGGCCAATTAAAGCTGAATGTATGCAATATAAACATCTTCGAGTATTTAGACATGAACCACAGaacaaggtaaaagaaaaaattaaaatctgaacaATTAGACTGGGGATAAGCCAGCCAAACCTAGAGAGATGGACCCTATTCAGCCAGTCTCTAAATTCATGTTAATTTTTTCAAATGATGAGATTTTTGTGAAATTGGGGAGGAGGCCTCAAGGACTCTGTAGGCCAAATCCCAGCCGCTGAGAGATTTCTCCAATatcttgtattattttccatATGCTTTAAGTTTCATGGCATTTCTTTTGAAATTGCCTCAGACacttttctctttaattcatGTGCATCTCAGCGAAAACTTAATCTCCATATTTTTGACTCATTTATGTATAAATCTTCTCTGTGCTATTTGGTATCTAGGAAACC-TTCCCTAGGCCCCATTTTTGGCCTTCCAAGTGCTATCCAAAGTAGAGAGTGCATCCCAGGCCCCGTGGTGGGAGTTTACATCCCAAATAAGTAGAACACATGCAAACCACTGAGGGTGGGGGTTAGGAGCCA-TGGGTTGCAGGGAGAAGCCTGACAACCTCTCAGTCCTGCTTGAGCTGTCCTCAGAGCTAACTGCTGTGCTCCCCACATGGCAGCACTTTGGAAAGGCTTCATAGATCTCCTAGAGGAAGTAGAGAGGAGATGCTTCAGTGATGGTAAAGGGCTCC-ACAAATGTCAAGAACTGGACTAGTGACCAGTGTCAGTGGTAGTGAGCA---------------GGGAGACAATGGTAAGCATATTTCTT-------------------------------------TGATGGCATCCAGCATGACTGGATGGGCATGAT-CTGGTGTGAGGAGATATCTACACATCTGTAGGCCTTGTGACCGAACCCTAGGTTTCCCTCACCTTTCCACCTTAGACTCCAAAGATGCACCCTGTTGGGACCTTGCTTGCCTCAAGCTGATCCCCCCTCTTGCAACCCACACCTACCGTGCCT-TTACCTCCTCATTCCACTCAGATTTTCTCTCACTTCTTCTTCCTGACTTAGTCTCACCTCTGGCTGTGCAAATCACAACTAATCTCAAGG------TGAGCTTCAAGCTCCCTTCTCTCACACTGCCCCACCTCTGCGTCTGTGCTTACATGAGCACATGCgtgtgtctatgtgtgtctgACCTTCC----------------ATGATCTATACTGCCTAAGACTTAACCATAAACTGCTTTAAAGTA--ACTCAGAAAAGCTGGCTTTTGTTAGCTATTAGT--TTCCCATTCTGGTGACATTCACAGGTAG----CCTTGTCCTCCCCTGTCCTCACT----AACAGATTACAAACACCCTGGGGACAGACATTTTGTACTTCACCCATGCTTATGATAGCACCTAGCATA-GACTATTTATGTGCGAAAATGAtaaatgaatatttgttgaatgaatataaATGAAGGCTTCTTTAAAGTCAACAAAATGAAAGTCTCTGTttggcttcaaatattttctcaataaaatttggAAGTATAATGATAGACTCTGGGCTAGAATTCAAAATTTCAAGATAG-TTCTTATTTACTAGTCTCATATT-AAAGTGAGAGAAGCACAGAGCCATTGGGCTGGAAGAGACCACTAGAAATTATTTTATGCCATGGTCTCA---TCTCTGGAGAGGGCTGTACTAAAGACTCTTGAAAAGTAGTTTCTGAGTTCTGTTCGGTGCCTGATCATAAGAGCCACAGTCATGATAATGAGAGTCATGCACTGAGCGTTACTTGTTCCTTACCGGGAGGGAAGGTCTTCAGTGCTGTCATTCAAGCCAGCCTGAGTCTGTAAAGCCAAGAGCCTGCT-----------GGGTGTGCCCAAGCACAAGAAGAACCACAGAAGATATCCTGGacctcccttctctcttctctt

a score=107361
s chr3           144278613 7102 + 160039680 [encoded data, 7914 characters]
s HiC_scaffold_1 130437925 7059 + 233722169 [encoded data, 7914 characters]

a score=29298
s chr3           144287080 634 + 160039680 aacaaaataaaataaaGCTGAGAAGCCGAGAAGCAGGCTACCTCTCTAGAAGGCCCTTTAGTGTTTCAAGCGGGCTTCCATGTATCATTTAACAGGCAAGTATGTGGTACCCAGGTGCGCAAGACTTTGCATTAAATAAAAGATAAAGAGAGCTGGCTGCAGGCATCTCCTGTC-TCTGACACCTAGGAATCCAATAATCATGAGAGAGTCTTTTTCCTAGGCGGGCCCCCCCAGGCATTGAGTTCAGACAGCATCTTTGCAAACTCATGTTTTATCTTAATAATCTAAGAGCCAATTCCCTCAAATTATCCATCAGAGGCAAAAG---GGAAAAAAAATCACCTTACTGTAACTTTTAAAATCCAAACTGATTAACTTCTCAAATAAATAATTTAAATCTTAGACATGAAACCATTTGGAAAAGAATTCTCACTTGAAGTCATTTCGTTCTGTACCTTTCAACACCAATGGGCTTCAT--------GAAACACTATGTTTGTCTGATCTGCAACATAATTTCCAAAACGACCAACCAAAGAGAAAAAGCAGGGCTTCCCGG--TGGCAGCCAACGTTCCCTTCTAA--CTGAGGAAGTTAAGCTAAGACAGGC--------TTGCAGCCATGTCAGTTTCTGAGACCTAAATAAATG
s HiC_scaffold_1 130448776 644 + 233722169 aagaaagccaagaaaagagaaatagctAAGAGAGGGGCTTACTCACCAGCTGGATTTTCAATTTTTCC--CAGTCTTCCATATATCATTTAATAGGCAAGCGTGTAGTACTCAGTTGTGTAAGGCTTTGCACTAAATAATAGATGAAGAGAATTGTCAATAGGTAGCTCCTGCCCTCCAGTACGCAGGGATACAATAACCatcagagaattttttttctaagagg--CCCCCCAGCCAA-AACTTCAGATGGCAACTTTGCAAACTCATGTTTTAGCTTAATAACATAAAAGCCTATTCCCTCAAATTATCCATTAGAggcagaagaaggaaaaaaaaatcaccctccTGTAACTTTTTAAATGCAAACTGATTAATTTCTCGAATAAATAATTTAGATGTTAGACATGAAATCATTTGGAAAAGAGCTTCTACTTGGAGTAATTTTATTCTATACCTTTCAACGCCAGTGGGTATCATTAAGTCACAAAACCTAATG-CTGCCTCATCTTCAACATGACTTCCAATATAATCAACCAAAGGAAGAAAGCAGAGCCTCTAGGGAGGGCAG-----GCCCCCTTCTAATTCTGAGGAGACAAGG---ACACAAGCAATGTGAGCTGCAGCCAGGTCAATCTCTTCAACCTACGCATATg

a score=40982
s chr3           144289470 2245 + 160039680 AAAAACCTAGTCACACTTCACAAGTAGCAGGCACAAGGGTTCCTCAGAGCCCTGCCCTTCTCACTAGTCCCTAAGTATTTTATTCTGTTTTAATTTCCAGGCCTACTGGAGGCCCAAGTCTTTTGAGTGTTCCGCTGGAATGTTAATTATGGGAGATTCCAGACTCTGTGGCTTAGAAAGGAGTTCTCATTTACCCTGTTGCCTGGCACTGGGGTCCCTCTTGCCCAGCCTTCAGAACAGCAACTCACTTTCCAAAGCCCACAAGACTGAAGCCAGATGGCAGGCAATGCAGCCCAGT-CCTGCTGCTTCAGGCTTTGCTCACCCTGCCGGCCC-TGTAGCTCCATCCTCTGGCAATGGTCCTCTAGGCACTATGCACCCTCTCCAGGACTCAAAGATGGATCCAAAGAACGCCTTCCTTCATACAACTGCTACAGATGCATTCGTGGTCTCTTGCTTCACCTGAGCCACCACCAACCAGAAATCAATGCAGGTCTACT-------TACCAAGTCAAACACCACCCACTTGTCTGAAAGGAATTATTTCTTCCTGTGCCTGCACTTCACCTCTCCTTTGCTTGTGGCAGTGGCTTTGGCAGCTTGCA------AGGGATTCACTTTCCAGCAGATTCCATCATTAGCATGTTTGATCCCCTTGCACAGCAGGTCAGTACAGGAAACTCCCAAACGGACCCCAAAGC-----TTCCTGAAGACCGCCATGCCCCT----------------GTCTCTGGCTTGCCCGCTCTGCTAGCTGGGTTCTTGATTTTCAGGATTCACAGAAAGGCCAGATTTGCTCTGTGATTGGAGATATTCAATGTCTCCTCCACAATAGGAAGCTTGGGAAAGCCTGGGACAGTTGACCTCCATAAAAGAACGAGAGCAGAGTAATAGTAAGAACCTTTAAAATTC----------CATAAGTGgaggccgggaaga----------cagctcagtaagtaaagtgctttcggtgcaagcgcgaggagccaagtcccaa---tcacc-----------agccgtcaagtaaaagccggactgagcagtgtgtcggtaatcccc----gacacaacattacggctggggagacaagca------aatccctggtctcccttgccagccaggctagttaaatg----gtgaactccaaga---------gactctctttc---aaaatacatgctggagtgtggtgaggaagacacccaatagaagttcctagccttcacacaAGCATGTGCGcatacacacac-acac----------acacacacacacacacaca---cacacacaAACTTCACAATAGAAGATGAGGACAACCTCAGTCGTTTCAACTTCCTTAACTACTACCCCTAGACAAAAGGCTCCGGGTCCAAAAGCCAATCTTGTAGAACAGAGCCAACACCAGTCAGATCATCCTCTGTCCTCAAGAGTGAAGAGAGGATGAAG-------AGACAGGTGGATTCATAGCTTGCTCCTAAATGAATCCAGTGACTTGTGCTCTGTATCATCGAGGCCAGTGGCTTGTGACTTTCACAAAAATCTGTTTGA----------AAATGGAAGCCTTTGAGGATCAAATACTTTTCTTTTGGTCACGGCTAGATCCTTTCCTGACTGGGGATCA--CTGCCCGTTCTGCTTA-GTTAAGGTTGTGAGTCC-TAGCCTGGGACGCTCAGGT-GACCATGTCTTCTCTTCCCTCCC---------GCAGAAAACTAGTCTTTTTTGATGAGGGGGAAATGAATGTCACTAGGATAACAGCCAGAGTCTCAGAAACCTTCATCTCTTTTTTCTTCTGCTTCCAAGTATTCAACTCCCCAAGAGTCAAGCAATCTGCCTAGTGTACCAGAAAACCATGTCCATTTTTATTGGGAGCTATTTGAGGCGTATCAGCAGCATGCCAGACACTGTTCCATGGGCCCCCAGAGCCTCTCTCCTCACTTCGGACTGATTTATGCTAAAAACAATTATACACCCTGAAGCTTCACTCCTGGAGCCAGCGAAG--GGGTACCCTGAGGAGCCCTGTGAGAACTGATGGTGTTTGCACAGTATTTCTGTGGATCTTTAAGACA-----GACATCCCAGGCCAACTGCAAGGCAGACTGGTTTTGAGTCTTTTTATAAGCAATGAGTCGGATTGATGGAGGATTCTGCATACGCTGGGAAGAGC-CCAGCAGAG---CCCAGCATGTTCTCAGAATT--CCAAGGCTAACTGGAGTTCCTCCCCCATTCAGAGTGCTTTCTGGTCACCCCGGAGTACATAAGGCTGTGGCTTTCAGTGC----GAGTCTC------GATGCCACTCTGATCATCCTGTGTTTTTG------CAGTCAGAGATATGTT
s HiC_scaffold_1 130450018 2238 + 233722169 AAAAACTGAGTCAcatatcacaaataataaatcCGATACTCTCCCAGTCCATTACCCTCATAACTAGTCTCTAAATACTTGATCCTGTTTTAATTTACAAGCCTACCAAAGGCCTG-GCCTTTTGAATGTTTGGCTGGAATGTTAATTATGGGAAATTCCAGCATCTGTGGCTTAGAGACAAGTTCTCATTTATTCTGTTCCCTGGCACTGTGATCCCTCTTGCCTGGCCTTCAGAACACCAGCTTATTTTCCAAGGACCATGAAACTGAAGCCAGATGGCAG----TGCCACCTGGTCCCTGCTGCCTCAGGCTCTAGCTACCATGCCAGCCCTTGGAGTGCCA-CCTCTGGC-CTGGATCTCCAG-------------TTCTTAGGTCTTCAAGGTGGCTCTGAAGAAAGCCTTCCTTTATACAACTTCCAGAAACACATGCTAAACCTCTCGCTGGGCTTGAGCCACTACTGACGGAGAAGAGCTGCAGGTTCATTTGTTCGCTATCAGATTAAACACCACCCAGTCACCAGAAAGAAATCATTTCTTTATTTGCCAGcgctttgctttctcttctctggTTCTAATGGTGGTGGCGTTCTGTGCACTGTAGTGGAGCGTTTCACAGCTGACTGAACCATTAACTTGTTTGATGCCCTGCCATAGCAGG-CTCCATGGGAAATTTCTAGGGTGTCACCAAGTCTGGGgttctcagaggcagctgtgccTCCAAGGACCCCAACCTGGGTCCCTGATTTGCCT-CTGTGCCACCCAACTTCCT--TTAGCCCAACTTGCAGAAATGCCAGGCCTGCTTCATGGTATTCAGTGCTAGACATCTGCTTATTGGCAGG-TGTTTGGGGAAGACTAGG-CAGTGG-----CATAGGACATTGAGGGTACTG-GGTAGAAAGAATGTTTCGAACTCTCAGCGTGgtcagaagggaag---gggaaaaccTCTTACCTCAACTCCCTGACTCACGATATTCC--TGCAAGCAATGGTTTTCCAGTCCCCAGGGTCATCTCAGGGAGTGGAACCATTTTATAGAA--CAGACTAA------------TTATCCCCATTGGGTACACCAG------TGGGATGGCAGGCATCCGGCAACCCAT--CCTCATGTGAAAGTCCCCTCAAGTGAAAGAAGCGTGAAGATCAGGGCAGCTGTGTGGTTCTTGCTCCTGAATGAACTGAGTGGTCTGTG----------CTTTCA--AAAAGCCCAGGACCTTACAACGGCCATG-GCCCACCCGTACATGACACTTGGCTTTTGACACTGACACATGTGTTCAGTTTACCCttgttttacagaagaaaaaaggaggagaa----ag-----------------------------aggcagaggaggaggaggagaagag--------gaagaaaaagaaaaggaaaagaaaa----------------aaggaggaagagaggaagaagaaggggaagagagaggaaagggtagcaggggaagaagaggaggaaataaaGGAGG----GAAAGGCAGAGGAGAG-GACTTCTGG-TATCAAAGGATTCTCTTAGGTTGTGAGGCCAGGTAAGCACAAGTAAGGAGAGAGCCTCTGGCTCCAGGCCCTACCCAGGTCTGCCCCTCAGTCGAGGTCACTCTGCCTGCTCTGTGCAGGGTGGGGGCTTGGGCCAGGGGCCTGAGACCCTCAGGTGGGCCCCGACTTCCCATCCTTCCCATCCTTCTTGTAGGGAATGAGTCAAttc--aacaggagaaaatgaaTTTTGCTAGGATACCCGCCAGAGTCTTGGAagccttcattttttt---------cctccaagcAGTTAATTCCCAGAGAGTCAAGCAATCTGCCTAGTGTAGCAGAAAGCCATGTCCATTTTTATTGGAAGCTATTTAATACGTATTAGCAACATGCCAAACACTACTCCATGGTCCCCCAGAGCCTTCCACCCCACTTTGGACTGATTTACACT-CAAACAATTACACATTCTGGAGCTTCACTCCTGGAGCCCACAGTGCTGACTACCCCTGGGGACTTGGGGAGGAGCACCAACGTCTTCTTGGCATCTCTAAGGG-----AAGGCACCCTCGACGTTCC----------CAGGGCTGACCAGCTTTGAGTCCAATT--------TACGTCAGGTCTCCCAGGCTTCCTGCACACTGGGAAAGGAGTGCTACCAGAGCATCCCTGGGAGCTCTCTGAGCTTGCCATGG---ACTGG----CCGCCCCATTTCCATGGGTTCCCTGGGGACTTTGGAGGACACGGCCCCAGAGCCCTGCATGCCGTACAGTCTTGAAGAGGAGGCTACTCTGGTTAACCTGCACTTCTGCTCCCACAGTCTGAAATACATT

a score=36368
s chr3           144296372 1441 + 160039680 TCTCCATATTGCCAGGC--ACAGGTTTATTCATAAAACCTACCTGCCCCTTTGATTAATAGAATCATCTGCATAAACA-----CTAAGCCCAGGAGATGATCAAAAAAAA----TGGTTGATACATTATGAATGTGTTTAGTTATCCCTAAGAAGTACTTTAAATCAACTATTCAAACTTCAAACCACCAGCTAGTCAGTGGCTAGTGTGTATGTAATACAGTGAGCTCGGTGGAAAGGGCAGCTCATTGGAAGTCTTATGTGTTTATGAAACTTGCATTCTATGGAGATTTGCCTGACTGCCAGGCAAATATCTGGAGATAAAGTAAAAGGAATTCAAATTTTCTT-GTATTTCTAGAACTATCATTCTTTCAGAGATTCGACTTATTTTTATACGTCCAGAGTGGAGAGTTCAGGGATTATGAAGTAAATGACATCTCTCTGGAAATTTTAGAGTGCTGAAATAATATTCTCCCAGCTGCATTATAAGAGTTATAAATCTGACCCATCATAATCCGGCCATTGTAAATGAGACTGACCTAAGCAGTTATCCAAGATGACCATGATTTTAAATCATTATAACCTTTGGCCCTCTGAACCAAATTCAGTCACCCAAGCCCAAAATTACCTGTCTCTGCCATCCAG-----TCTTAAGAAAATAA------------------------------AATGAGACTTGGTAGTTCACCTTAGAGATCCAGGATGTGTCTGCATAGCTTTAGGTA------ATCTGTGAGCAAGCTACTTACATACAT---TATGATCAGGAGGGTGTTAACCT------------------------------------------------------------------------------------------------------------------------------------------GACTTAAGGAGTGGCAGGATTACACAGT-GAAAGAGCCCAGGCTGACAGAGGGTTAACAGCCCAGGCTAACATCTA---CCTCTGCTCCCTGTGAATGTGTGATTTCAACTGGCCCGGTTTTCTTTCCCTCCT-----------------TGGTGGGAC---------------TGTGGTAAG--ATATATGAGATACTTCGGGGAAA-TGTCTT---GAAGATTTCTGAGGATAGACTAGTAACTTCCTTACTGTGATACATAAGTGTTGCCTGCAAAGTATTTGTACACTCAATTCATTTTAAGCCTCTTAA------GTAAAAAAGGCAGGGCAAGTGTCATGGGCTGACCTGTCTAAAAC-GCTAATGCTTCCTAATTTTTAGCTTTTAAAATGGATTATTGACCCGTCCATTATTATTTCATTTTATACATAAGGACAGCCATAGAATCTAGCAGT---TCTGTGTCTTAGGCTAGCG-TGTTCTACCAAAAGGCCTATCAGCAATGAGTCACCTAAACT--ggaaaaggcaaatgcagca------aaacac------------agacaaagactaaggataaacatttcacagaagaaacacagatggccgataaatgcttttaaaaaaatggatggactcaccaataatcaaagtatgtaaaacaaagcaaaaagaaagtgttgctccactccctttatcaa-------------------attagtggagTGGGCAGGTGGGATGGTCATTCATGTGCCCGTAtatgttt
s HiC_scaffold_1 130454253 1664 + 233722169 TCTCCTTAGTGCCTGGTCTAAAGTCTTATTCGTAAATGCTATCTGATCTATTGATTACTAAAAAT-CCTACATTAAAGAGTAGCTAAACACAGGAGTTGATCAAGGAAAAATACTTGTTGATAGATTATAAATGTGTATCCTTATCCCtaggaaatattttgaattaactATGCAATCTTCAAAGCATCTTTTATTCACCAGTTAGTTTGCAAGTAATACAATGCAATCTGCTAAAAGGGGAATTCTTTGGAAGTTTTATTTGTTTGGGAACCTTGTATTCTATAGAGATTTTCCTTCCTGCT-GGAAAACAGCTGgatgtaaaatgaaagaaattaagtttTTCCTCATATTTCTAGACATATTATTCTTGCAGGGATTTAGTTTATTCTCACATGCCTACAATGGAGAGGTAAGGGAATGTGAAACACATGACACCTCTTTGGAAATTTCAGAATGTTAAAGTATCATTC-CCCAGTTACATTATAAGGGTTGGGAATCTGTCTTGTCATA--------ACTGTAAATGAGAATGACCTACACAGTTACCCAAGATGGCTATGATTCGAAGTCATTATAGCCCTT-ACCCCGTGAACCA----CACTCCCAAGAGCTCAAAATTGCTTTCTTCTGCAACACAGTCATTtctaaaagaaagaatcacaactCAGGAATGCTCTTCATGTTGCTAATGAGCCTTGGATGGTTACCATACTGATCCAAGTTATGTCTACATAGCTTTGTCTAGTGTCTATCACTTATCA--CCACTGAAGTACATAGGCCTGGGCAGGAGGCAGTTTACCTACCTTCTAATTTTTATTCCTCTCTTTATTTATGTCAGTTGAtggcagtgctggagatggaacccaaggccttgcacatactaggcaagcactgtaccactgagctagagCCCCAGCACAACTCACCTGCCTTTTAAAGGACTTGGAGGGAAGCAagatcacaaaatggaaagatcaTGGGC---CAGGGTTCCAACCGCCCAGGCTGACATTCATTCCCTCTACTCCGTGTGAGCCAAGGCCTTAAACAGGCAGagctttgtttctcttctctgctaTATGGGGAGAGTGGTGAGAAATTTATTCAGGGCAGTGTGATGAGAAATAAATGAACTGCTGTGGGTAAAGTGTCCTATAGAATATTGCTCTGGATGAACTAATCAGTTCTTTTTTTTGATCCATATGTG---------------TTATATGTTCAACTCA-TTTGAGTTTCTTAAATTCCTGTTAAAGAGGTTAGGCAAGTATTACAGATTGAACTGTGTGAAATGGTTAATATTTGACCATTTTT--CCTTACTGATGGAT-------CTACCAATTA-----TCACCATATTGGTAAGAA-AACTTCAAAACCTAGTAGTAGATCTGTCTCCTAGGATAATTCTTTTCTCTCAGGAAGCCTGTCAccaa--aaatgttcaaattaaaaaaaagacaaacacatcaTAAACTAAACATACAAACCCTATAAGGCAAAGACTCTGAGTaaaaatttaaccaaataaacacaaatggctaatacatttttt----aaaattaacaaactcACCAatattcaacatatataaattaaaacataagCCAGGTAGCATACCCTTCAAgttagcaatttttaaatattatttctcagTGTTGAAGAAGGTACGTGGAA-----ATGTATATGCTCACATATTTTT

a score=29005
s chr3           144299525 1199 + 160039680 CTGGGCTGAGTGGCACTGGAAAGAGAGGCTAAGTGTGGTCAAGGGTCTAGGAGAGGCAATCAGAATCTCGGTGACCCACGGA--------------------AGTAGTGCCAGTAGAGG---------------GGTCAGATGGCATCAGAAATAAACATGGCCCATCCAGTTCAGCAACGGACATATCGTTAATGAATC-----CAGTGGGTGCCGTGAAGAGTGGGTGTATGTGTCAGGAAATGGAGGTAGCTTTTGTGAACCTCATCTCTTGTGGAGA----------CAGGTTGAGCCAGT-------------------------CCCCTACAGCAAAAGTCTGAGCCTACTGAGAGACCTT--CCTGGAAACCCAAGAGGAAAGGGGGGAATGCAGAAATGATATCATTACTTTAAATCATGCAGATCAGGATGCACCCATCTGTAACACACTGTTGTCAAGACAACGGACAAGGCCTC-CAACCCATCCTTC-----ATTCATCTGTCACCTTGCTCTGTGCTTGTGGCCACCTGCCTTTTTCTCCCTGT---------ATAAC--TAATTTAGATGAGAACCTGTTTGTTTCAGTCACGGGGGAGCTAGTTTCATTTGTGGATAGGATCGTTGCCCATCTGAGAAAGGGACCTC-------CTCCAAGGGGGTATATATAAGTACAGGGATGATAGTGACACTGTGTGTC-----TTCCAGTCACATCCCTACCTAGGCCATAGATGGCCTGAAGAAGTCGGGCATGTGTCATAATATAACAAACATTCTTTAAAGGCCTA--------TTACTAGACAAAACAGGTGTGAGTAGCAAGCCGTACACTTCCCAAGATTTCTGTGGAATATACGGTTAGTTACTGCAAAATCTCTTAAAGAATAACAAGGACTAATCAATGGTATTTCACTTATTCCAGTGGTAGCTGAACATT--CTGGGTACTTGTAAGCTATCACTAAGCAAAACACAATAGCTC-ACCTACTAAT-AAGGCATTTAG-AAAATTATGACTTCAACAAAT------GATCTACT---------------ACAATAGACACAATCACCAGTGTTAGAATTAAGTCCAAGATCACCAAAGAACTCCAAGAAATTTAGGAGGTTAAAAACGACTTCAGTATTCCAGATTGGCTCAGCAACGGGTTTAAATTCCTCTAGCAACAGCACCTTTACCCCCTGTCCCCCCCAGCCTCACTCACAGAGTTTTTTGTTTAGTTAATAGTAAGTAAACAAAAGAAGAAAGTTATTATCTGACAATTCTGGAGACCAAGAGGTATAAGATACAATGCCTA
s HiC_scaffold_1 130459073 1242 + 233722169 CTGGACAGAGAGGGgccaagaagagaggaaaaaaat-----------caggggAAAAAACTGGCGTCTTGGTAGCGCACAGAGAAACAGTCTGTAGAAGAGGAATTATGCCAGCAGAAACAGAATCCTCAGAAAGGTCAGATAAGGTCAGGGCTAAGTATTGCCCATCCAATTCAGCAATGAATGCCTCATCAGCGATTCAGTAACAACTGGTGGAgtggggagtggggaggag-gTGGAGAAACGGAAGCAG----TGTGGACTTCATTCTCTTTGAAGAAGCTCAGGAACAAGTCAAGCCAGTTGTTAAACTATGCCTGATAGTTAGTCCCCTATGGCTATTACCTGAGCCTTCCGACAGACCCTTCcctggaaat--------gaaaagaaaaatacaaaaatgacttCGTTGCTTTAAATCATGCAGATCAGTGTGCACACATCTGTAACACACTGTTGTCAAGACAACTGACAAAGCCTCAAAACCCATCCCTCACTTGATTCATCTGTCACCTTGTTCTGTGCCTGTGGGtgcctgcc-ttttctctctgccgCTGTAAGATAACCTTAATTTAGATGAGGACCTGCTCATTTCAGACCTAGTGAAACCATTATCATTTGTGGATTGGATTG-TGCCTGTCTGCAAAGGTGATAGTGAAGAGAATCTGAGGTAGTGTACA-AAATATAGGGATGACAGTGACCCTATGTATCAGAAAGCCGAGTCACAGTCCTGGCCAGGACACACAGGGCCCATAGAATTCAGCCATTCCT-----TAAAACAAACG-TCTTCAAAGGCCTACCACTTTCTTATTTGGGAAGATGGGAATGAAT-------CACCTACACCCCAGGATTGTTGGGGAATATATTGTTTAAAATGACAAAGTATCCTGGGGGA-ATCCAGACCTTGTATATTATATTTTAGTTATTCA---GCTTCTTGAGCATTGGCTGGG----TTTAAactataaagacagaaaatatattttatctaattACTGACAAAGGCGCATAGTAAAAGGATGACTTCATAATGTTTGACAGAATTACTCTTTTAATTTATATGATAATAAACACAACTACTAATGTTAGAACTAAATCTGAGACAGACAAGGAACCctaagaaattgaagaag-taaaaatgacctCAGTATCCCAGACCAGCAC--TACTGAGCCGA---TCCTCCAGC-ACAAtgcctat-----ttttctttctaaacctAATTTA---------------------------------GAAAGCACAAAATTATTGTTTGGTAATTCTGGGGTCCAGCATGCAT----CACAATTCCTA

a score=24322
s chr3           144302554 1849 + 160039680 acagctgggcaaactgagacTTCACAAGGACAACCATAGCTAAACCA--TCACACTTCatcagcttcctatacctgctataacaaattaccacacatttggcaacttgaaacaacagaaatctactcccatatacctgtccgacttagaagtccagagtcaatctc----------------aatgtcagcagacctggctctttctagagggtatagaggaaagtctgagtcc-------------------actggcct-------tcgcctatgaccatggactgtgacaccgtttttcccaatgtctgtcatc-cattacattttcctctctgatagtcac----tccctgcctctctcttat---gacccttgtgattacatgtaaagctgaca-----gttcagaataattcag--atttcaaggtccttaacttaattatgtctgcaaagctctcttttttattacaccaggcaatgggcaaaggttccagggatCTAAGTGGC-----TCTTCAGGGTTGCCTCCCAAGCAacacacacacacacacacacacacacacacacacacacacacacacacacaAATGTTCAAGACTTCT-TCCTTCCTGGCACCACACTGTCCGGAGTGCTCTCTCTCTTTGGAATT--CTGTCAT---CCTGTGTTAAGGAGTCCCTTGTAGTTTTTCAGATGAGGCCCTGACCAAGGGGGA----------------------------CAAATCATGTGGATGAGGCGAGCCTCATAG-AACTGACCCTCACCCTT-----TTGTCTGTGTGCTACACATTGCTGCCCTCATCTCAAACCTGGATGA--GGATGTCTCTGTCCA--CACATCATCTCTCTCTTTTGTCTTGCACTCCATGCTCCACTGTACTTTTCTTATCATTTTAAAAATGATTTTGGCtttgttttgttcggtctgtgtacacatacatgcatgtgcacgttcctgcctgaggaggccagagggcacagggtccctggagttggagttacagacttgttgtgagctaagggttttataaccaaatcccaggcctctgcaagaacagctgagcatctctccagccccAACTGTGTTTTTCCATTCCTATTTCTTCTCATCTGACCTGCTAGACCGCTTCTGTATTTACCCTCTTTTGGGTTCATCCATAGTCTTTGTAAATAT-CACTTAACATCTCAGAAAATCCAGCCATTAATGGCATTCTTACCTTCTCATTGCCAATTGCTAAGACCTTTCTCAGGCCATAGAATGACCCAGTTGGAAGCTGTTCTACCTCATACCCAAAGAAGAAAAAGAAACTGGGAACAAAGCAAGACAGGAAAGTCAACTCTTTGGGGAAGTTGATTTAAAATCCACTTGTTCTTTAGT-----AGCACCTCTTGG-TTATCCTGTCATAATCATCAAGATTAAAATATAAAGGAGAT-CCCCAAACTCCCCCAGAC-TGGGTAGAGCTGTTTCTGATG-TTAAGGGTGGGCTGCTTGAAGGATTCCCAAACTAACTCT------CAAGGTCACCTCTGCATCCATTTCTAGCAGTCTCTACCAATGGAGAGCGTGCCCGTGCAGCCTTCTTCTTGTAG-ACCCCATATTGCC-TGTGCCAGGCACG-TTCCTGGTGAGGGGATATTACCTCTAACAGGTAGACAAGAAGGTATCGAAACTGCCAACACCCAACAAAACCTAAGCATATTGAACCCGCGTGCTGCCGTGGGAAGCTCTAGAGACTCCAGCATCG--TGCTTG-CTCCAAGCGCAGCTCCCGAGATCAGCTCTGGGGATTTAATGCATCCCCTGCAGAGACCCAAGTGAAATCAAACAACAGACAAGCCGGATGGGA-ACTCTAGACACAAAATAGACTTTGACAGCTAGTCTCCTGTTATCTCAAGTAACTTCCGTTCCTACAGTTACATTCACT-ACCTGATGCATTTA
s HiC_scaffold_1 130460384 1619 + 233722169 ACAgtaggggaaactgaggcttagagaggaCAATTTTTGATGTCACAAATCACACT-----AGTTCTCTGCAGCT-CTATGACGAAGCAGCAGAAACTCAGTGGCTTTAACCATTGGAAATTTACCCTCATGTCACTGTGAAGCTGACGTGTCCAAAATCAGTCTCGCTGTGCTGCAATCGGAACGTCGGCAGGGCTGGTTCTCTCAGGAGCCT-TAGGGGAGAATCTGTGTCCTGACCTTTTTCAGAGGGATGCTGTCCTCACTGTTTGGCCTATGGCCCTGGACCATGTCAccttttctttctgtatctgtCACCACATTGCCTTCTCCTCTACTATAGTCACATCTCCCCTGCCTCCCTGTTATAAGGACACTTGTGATTACATGAAGAACCTACCTTATTATCCAGGATAATCTCTCCATCTCAAGATCCTTAGTCTAGTTACATTTGCAAAGCCCT---TTTTACCACACAAGATAAGAGTCCTGGTTTCCAGAGATT--AGAGGCAAATATCTCGGGGACCATTATTGAGGCTACACTCACA-----------------------------------------------TCAAGAGTTCTATATTCCCTGGTGCTGCGTTTCCTCTAATTGTTACTTTTCTTAGAATTTACAGTCACAAACTTGCTCAAAGGA--CACTGATAGTTCTTCATCTAAGTCTCAGTGAAGGGAGGAGTATGCTCTCTGAGCACACTTCTGCAGATGAATCACATGGACAAGGTGAGCCTCACAGCAGCTGACCATCACCCTTCCCTGTCATAGATATGTTGCACCTTGCTCTTGTGATTCCGTATTGGAGCCATCGGGTCCCCTTGTCCAAGtacatcttctttctcttttgtc-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------acTGAGTTCCA----------------------------------------CATGCTTTTCTGCCTCTATCCCTTCTCAGCCTACTCTGTGGGCCACTCCTTCATCTGACCCTCATTCAATATCTCTGCCGTTTTCATTAATGTTCTGTTTACTCTTTGGAAATTCTAGTCATTAGAGGCATCTTTACCTTTTCACTGCAAATTGCAAAGACCTTTCCCAGGCCACAAAATAgtccattagagaaatgc------------------aatgaaaagcaac------cacagaaacactgaaaacacaATTCTTTTGGGGA-TCAGTTTaaaatccacttttttttttttttttaagccccTCTCAGTTTTTCCTGAGAAAATCATTGAGATTAAAATCTAAACGAAAGATTCCAAACAACCCAAGTCAGGGGCAGGACTGTTCCTGCTACCTAAGGGTGGGCTGCTTCAAAGGTACCC-----AGCTCTTGTGGCTGAGGCTACCTCTGCATTC----------------------------CACATCTGTGCATCCATGTCCTTCTAGAATCACTCACTGCCTTGTGCCAGGTACACCTCGGGGTGAGGGA--GTTGCCTCTGTTTGGTAGGTAAGAAAGTAG------TAGCATGATCCA--AAGTCTCATACATGTAAA----------TGCAG-AAGCAGAGTTAGAGCTT--AACCTTGTCTATTTGACTCCCATCACCACTTCAGAGATCCTCT-TGGAGGTTGAGTGCAGCC----CAGAGACTTGagtgaaccaaaata--aagcaagcaagaaaTAACACTCTAGACATGAAGATGGCATGCATAACCAGCCTCCTCCTACCGCGAGGGTGTTCAgtttataaaattacatttgttAACCTGACTGGTTTA

a score=42380
s chr3           144304412 838 + 160039680 CCTTTTTAAAATTTCTCCCCTGGCTCTGTACTCCGTTATCTGCACCTCCCAAATCTTCCAGAATTTATCTTTGGTCAAAACCACTGATCTTTTTCT-CATATGTCTTCCATATGTTCAGGCCTCGGATCGCTGCGCAGAACGGAACCTGGTCACGGGAGGTTTTCCGAAGGGCGCACTCGCAGCCGCCATCCTTT-ATTCTTTGTACACTTGGTCAGGCACCACAGAAAACTGGTTTGGGTCATCGTGCTCAC-TGGGTTCGGATTTAAAGACCATTTCCACAG-CTCATCACTGCTCTGTGGGCACCAGAGTTTTATGCATAACAGCAATGGGTCATTAGTCCAATTAAGTCTTCGGCTACTTCAGTGATTTCTCCGGAAGGGAAGAGAGCACAATATGTAATTTCAGCTTTTCTTGTGAGGATCTTCAATCCTCCCATGAACTAAATCattttatcaattttt-aattttttttttaCTTGTCCCATTAAACTACAGACCCGGAACGTACTCATGAATGGATTCTTTCTGCTTAAACTCGAGGACTTCCTGACATAACAAAAACTGGTAATTAACTGGCTCAGAGACTTTTACAATAGCCTCTTTAAATAAGTTCCAGTGTGCGGCTCTGGCAGGCTAGCTCTACATGGCTGATAGTGGCAATGTGTCCTCAATTAAACAAGCTATCACTGCCTGCTATCGTCCCCCCCAGCTCTGTGCCCCATGCTTGTTCTGCTTGGAAGTGCCCACCTCTCTCCA-CTTGCAGCCATTGTAAAGTCATTCCCTGTGTGTGTGACTCCTCCCGCTCCATTCTTAGCCTAGTTCTTTCTTCACTCCCTAAA
s HiC_scaffold_1 130462604 828 + 233722169 cctttaaaaaatttccccTCCCTCTTTGTTTCCTGGTATCTGAACCTCTTAA-TCCTCCAAAATTTGTCTTTGGTTGAA--CATTTAGATTTGGCTTCACTTGCTTTCCAGACAGAGGGTTCTCAAAGGATACGGCAGAGCAGGACATGGTCACAGCAGGCTTCCTCATGA---TACTTCCaagctttttccttttcccctttggACACATG---------CACCAAAAGCTCACTTGGGTCACTGTGCTCCCCTGGGTTCATATTTACAGACCACTTCCAGGGTCTTGTCAGCTCTCCGTGGATACCTGGGTTT-ATGCGTAACAGCAATGGATCATTAGTCCAATTAAGTCTGCAGCCATTTCAACAGCTTCTATAGGAGGAGACAGAGCACAATATGTAATTTCAGCTTTTCTTGTGAGGGTTTTCAATCCTCCCATGAACTAAatcattttatcagttttttaattttttttttacatgtccCATTAAACTACAGAACTGGAACATACTCATGAATGGTTCCTTTCTGCTTTAACTCAAGGAGTTCCTGACATAACAAAAACTGGTAATTAACTGGCTCGGAGACTTTTACAATAGCCTCTTTAAATAAGTTCCAGTGCGCAGCGCGGGCAGTCGGGCTCTACACTGCTGATAGCAGCAATGCGTCCTCTATTAAACGAGCGATCACTTCACCCTGTCATCCCCTCCAGATCTCTGCCACACTCTCCTTCTGCTTGGATATGCCCACCTCTCTCCAGTTTCCTGCCTTAGGAAAGCCATTGACTGTATGTGTGActtctccctctctgtttccAGCCAGGCTGGCTCTTTACTCCTCAAA

a score=35089
s chr3           144307064 889 + 160039680 TTAATTTTTCA-GGCAATCTGACTCTACAATTGGTGCTA-GACCTTTTACTTACCCATAACTGT--TTCCCCTGTAGAA-ACACGCCATAGTGAATCTCGTTGTGCACAGGGACT-TGCTTGCCTGGGTCATG-GTCACATCTACCCCGTAGCATACACATGCTCAGAAA------------------TTTTTCTGAATGAAGATGAACCACACATTAAAACCATGCCAGTGAATGTCAGGTCACTGCCCTCGGGGCTGCTCTGGGCTCTTCCTTTAGAA--------CTGGAAACTTCCCTCAGAACTCAACTACCCTTTCGACGTGCAACGGTGCTGTGTCATGGTGGCCATTGTACAGGGTCACTCAGGAGTAGAGCCCTGCCCTCCAATCAAGCCACCCAGGGTGTGTCCAGGATAGGTGATCTTTGGCAGGGATTTGGCACGGAAATCGAGTTACTGTACCCTCAAGTTAAACCCCAAAACTCAAACTGAGAAGAAGGC-GTTCCTGGTTAAATATCCCAACCCTGTTTCTACCTCACCCTGCTGTGCAAATTTATTAAAGCAGTCTCCAAATAAACAAGTCCTAAAACCAATCAGGAAGTGGAAAAACATAAAAATAATCCCCAGCCCACAACACACACCCATGAAAACGGGAAATAAAGAAAA-TGTTCTATATAAAACCCACGGGGCCAAACTCTGCCCTCAATTAGTGGTAAAGGCTGCCAGCCCAAGTCAGCAGAGGTTTCCAGTGCAGTACTAGAGGCCTTGCTTAGGGCCCAGAGTGCACTGTGCTTGCTTTTAGTTCATACATCTGGAATATCAAGTGGGTGTGTGTTGGCTTCAATGTCATGGAAATTAAACTGAACAATACTATTGTCCATGTGCAGCT-CATTGAAACTCGCACtagccaaagagtttc
s HiC_scaffold_1 130464072 882 + 233722169 ttatttttttatagcaaCCTTACTCTTCAAGCACTGCTGCAATCCTTTGCTTCCCCAGAACTGTGTTTCTCACATAGGACATAAGCCAC-----------TCATGAGCAGGGACTgcatttgtcttatttatttgtcttgttcatt---TGGCATATAGGTGCTCAGGAAATAATTCTTACACAAAAGTTCTTCTGAAAAGACCTATAGTAAGCACCAAAATGACATCAGTGA---CCAAGTCCTTTCCCTCTGGTCTCCACAG-------TCTATGGAGGAGACAGGCAGGAGAATGTCATTTGAACTCAAGCACACTTTACCAGGGCAGTGATGATGTGTCACAAGCGCTGCTGCACAGGTGGACATGGAAG----------CCCTCAAATCAAACCAGCC----TCAGTTAAGGACAGATGAT---TGGCAGAGATTCGGTACTGACTCAGAGTGGTTGGACCTTGAAAttaaacc--aaaaaccaaactgaAAAGAAGGCAGATCCTGGTTAAATATACCAACCCTGTTACTACCTCACCCTGCTGTGCAAATTTGTTAAAGCAGTCTCCAAATAAACAAGTCCTAAAACTAATCAGGAagtggaaaaacataaaaataatccCCAGCCCACAACACACACCcatgaaaacaagaaataaagaaaaatgttctatATAAAACCCGTGGGGCCAGACTGTGTCCTCAATTAGTGGAACAGGCTGCCAACTGAAGTCAATGGAGGTTTTCAGTCCAATAATAGAGGCAGGATTTGGGCCACACTATGCATTGCACTCACTTTTAGGTAATAAATCAGGAATGTCAAGTGGGTGTGTGTTGGCTTCAGTGGCCTGGTAATTAAAGTGAGCAGCACTATCTTCCATGTTGAGATACACTGCAGCTCATCGTGGCCAAAGAGGTCC

a score=57650
s chr3           144309046 3191 + 160039680 AAGGagaatccagacacaaaggaacacgtactgcctaagtcacttaggtaaactgtctgggaaagctaagtccacagagactgg-ggtggatgtgaggttgtcagaaccgcagaggacggaggactggaaagtgaccactgataaacgtggctttcttttggaagtgagggaaatcgtctagaatcagataaagatcgtggtggcacaacgctggaaatgcacc-aagaactattgaagtcactttaaaatggcaagtttaatgaaatataaattatatattaataaaac-ATTACT--AAAACAACGCCCAAGAATGCTTATGAGGTAGGTTTCACTTTCCTTGTTCCATAGA--CAAGATTTGAAGTGAG-----GGCTTCCTCAGACTCTGAGGGGAAGG-AGTAGGAGCTACATTTGAGA---------ATCCCTTTCCCATCTCA----TCTCACCGGGATGACCTCGAAGGCTCTGGAAACGAGGGAGC------------------------------------------------------------------------------GAAAAGGAG-------------CCAGACACATCTGGCTTAGATCTCTGGTGACTTAATTCAATCCTCATTTCCTCG--TCCTTTACGGCCAGCTTGATCCTGGGTCCCGGGCAGATGGGTGTGTGGCAAGACTCATGGGAAGCCTAGGAAAAGCCATAAACCTCATGTCACTGTGACCACCGACCCACACTGTGGCCCCCTGGCTCCTATCAAGATGTCCGTGCCAACAATCGATCGTAATGGCAGAGGCTCAATTCAATTGTTCCTGAATCCCCATCCATCATGAGGACAGCCAAATGACAACGGTGGCCTTGTCAGGACCTCCTCCTTCATGTGCAGAGGCTTAAGACAAGTGGATGGCCCTTTCGCCCTTAATGATATCCCCTCCTGCAGCAAGGAAGCTCCACCCGAAATAGAACCCAATACTTGCTTACACTGTTTATTATACATCATACATACTATGGGTCATGTGTCATAATTACCTGCTGCTCTATCTTCTTCTACCTCCTCCTCTGTCAGCTTCTTAAAGGGAAGGTT--------TGTTCTATTCAGTTTTCAACTCCCATGCTATGGAAACTTCCTGTCTCCCATGAACAAAAGTT------------CTGAGTATATACTGGGTATTT-TGGAGTAGCCAGCTCCAGACGAAAATATTA-CCGAGTGATCACGTCCCATCCTCCCAAT-ACCCCAGGAGAGGGGGATTGTGGCCATCTCAATTTTACAACTAGTAAACACAAGTCCAATGACATCTCTCAGAATGCCTCTGAGATGAATTACTGCTCGGCctcaatactcagtactcaatactcagtactcaatactcaatactcaataatcagtactcagtactcaatactcaatactTCCTGGCTCAGCCTGGTAAAAACAGGGAACATGTTCGCACAGATTTAGCTCTTGTTGTATACAGTTGGCAGCAGCGATACCAGACAGTGTGGTGTCGCCTAGGGCATGACAAGCAGTGCCTCTTTGCTTacacacacacacacacacacacacacacacacacacacacacacacacacacgcgcgcgcgcgcgcgcgcgcgcCACCAGGGGTAG----CCTGAATCCCCATCTTCCCATTCGG-------------------CTCGAGGATTCTCATTTTTAGGATTTCTTTTGCTACACAGAAGTGAAGTGAGAGAGAAGTAGCCTGTTTTCCGAGTCTGAGTCATTTAGCTGAAATTGTCTCTTGCCCTTCTGGTAGAGATCCGTATGTTTCCGGTCTCTCTGGAGTTCTTTTACTAACAAAAGGCTAAGAGTACCCAGAGTTTAACAAATCTTAACAATTGTCTAGACGTAAG-TGATCACCTTCAGAAGCTAAAGCATATC------AGAAGAGGATCATTTTCCCCCTGTTCTCATGGGCTGGCTGAGGAACCTGAGGTATTTTAAGCACGCACACCTCTATCCCCGACCCGACCACATACATTGTTCATTCTTGTCTTGACttttttttttgagacaaactctcattatgtgtcacaggctggcctcagacatgccatccttctgcctcagcctccctcagtgctgggattacagttgtgggccacacacattacatcctgtctgtttTCAAATCCATCTTTCCAGCTAAAAATTCAGGACGTTAATGATGAC-------AGCCCTGAGTGGATCTCCCACTATCCT-CTCAGCACTCCGTGGGTCCCACAAAGCACCAGTGTCAGCGGCTTTCCGCTTGCAATTCACACCCAGGGATAGAATTTAAGATATTGGGCCTCACTGACTTGACTCTGGGAATAACCAAGTAAGGCAGGAAATATCTCCATGACCACCTTCTGTTGTCCTAGGCCAACACTCAGTGTTTGATGACCACTGAGCCCTATGCACCTGGATCTCCCATGCCTTGGTTGTCCTTGACTGTTGTCTTA------CTAGACAGGGGGACTTTCCTGTGGCGATAG---CCCTGGGCAGGAGTAATGTTTCTGTGTCAGCTTAGACTTGGGGTATGTTTGGTTTGCTTTA----CTTCAGTCTGCAGAGGGAGGTCTATGAAATAGA--TCATTT----TCAGTGGTTCTTTCTAATCTCTTGGCGT---CTTCTCTTCTACCTGTCAGTGTTTCAGCTTTCCTAAATCCCTGGCCCCAAGTGCCTCAGCATCGTCAAAACCAGCTGACTATCCTAAGCCTGCACTTAGTCCATAAGGAAA----GATAAGAACTGG--AGAAGACTTCCTG------------GGGCCGT-TCATGGTAAAGCAGTTTGGAGCTGTTGGAAGGTTAGTCACTCAAGAGGCC-----------AGCTCTTTGTGGGTATAGAGGAAATCTATCAGCTCCCACAGTTCACACATTATACTGCCCTTCAAGGGCCAAAGCATTCCTCCAAACTCCTTC-CAGTTCCAGGGGACCTTTCTCAAGCTCTTCCGCACCAGCCTCCTTAGATTAGCTAGCTCACTGTCCCACATACCAAATCCCATT--------------TGTCTTCTTTG-TTTTCCACTGCCCAAAC-------TCTGCACACAGCGCTTCCCAACAGCATATATTTTATCCACACACCCCGGGTACGTTTGCACCCT---------------------------------------------CTTCTTCCACCACCCTAATCTGTCT----------------CCAAACGCCCAAGT-----------CATTT----------------CTTCTGTGAAGGGTTTCGTTTTCCAGTTAC-AGAATCATAAAATGTTCTCTGTTCT-----TCTGTGAAAACTTACAAGTGTCTTGGAGATGA-GAAGTTGTCGTGTT---CTGAGATACTGTGGAAAGTAA--AGATGAAG----ACGAGAGGGATGATAGGCAAG-GATA--GGCCAGGTAGATACAGAACAA
s HiC_scaffold_1 130467090 3174 + 233722169 aataaaaagccAGTCATACAG-ATCACATATTGTATGATTTATTTACATGAAGTTTCTATAATACACAAATCCATAGAGTTAGATAGTAGGTGAGAGGTTGACAAGAGCCTAGGAGAGAGAAGA------AATG--------TATATGGAGGGTTTTTTGGGA---GAAGGTAGT--TCCAGAATTAGATAGTGGTGATGGCTGCATGACTCTGTAAGTATACTTAAAAATCACTGAAATCACTTTAAAAGGGTAAATTTTATACAAtgcaaattatatctcaataaagctgtcattgaaaaacaaaattcaagacC-CTACTGAGGTAGGTCTCATTTTCCATGTTTTGTAGAACTAAGGTTTAGAGTGGGTAAGTAACTTTCTCAAGAACAAAGAGAAAGGCAGTAAGAGCTACTGTTCAAATCTCCACACATCTCATTTTCACCTCCATGTTCCTAACTACACTGCTTTTAAAGATTtggaaatgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaggagaaggagaaggagaaggagaagaggctcTAGTCTAGTCACATCTGG--TATTTCTGGGGTGATTTAATTCAATCCTTATTTTCCTAATTCCTTTTCCACCAGCTTGATCCCAGGTCCCAAGCAGATGGGC-TGCAGCAGGACACACGGGAA----AGGAAAGGTCACAAACCTCATGTCAGTGTGGCCAGCGACCCACACTTTGGCCCACTGGCTCCAATCGAGAAGTCTATCACAACAATCAATAGCAATGACAGAGGCTCAATTCAATTGCTCATGAGTCCTCATCCATCATGAGGACAGCAGAATGACAGCACCGGCCTTGCTAGCACCTAGTCTTTCACATTTCCAGGCTTAATGCAAGTAGATAGCCCTTTCACCCTTAATGATTCCCCATTCTGGAGCACTGAAGCTTCTCCTGAAGTAGGACCCAATATAGAGTCCTATTATTTATTATCCATCGTATTTACTCTGGGCTATATATCATAATCATCTGCTGA-CTGTCTTC--CTACCCCCTTCTCTGCCAGTGTCTCA-----CAGATTCTTCTTtgtgttctatttatttttaaattccc-----ttGGAAACTTCCCAGTACttattaacaaaaattttattacatttcctGGATGTTCATTGGTTATTTCCTGAATGTCAGGCTCTGGGCTAAAGTAGAAGGGGagtgtttatttttcatcttctcaACGACCCAATGAGGTAGAGACTATCACAACCTCCATTTTACAACTAGTAAACGGCAGCCCCATAA-ATGTCTTTAAGTTTCTCTGGAATGTATTTTTGGACAGTGTAAATATTC-----------------------------------------------------------------TTCGGCCTGGCTCACTCTAATAAAGACAAGGGATATGTTTTCATTGATTTAGATCTTGCTGTAGACACTTGGCAA-ACAGATGCCAGGCAGTGTGGTGTCGACTGGAACATGACAGCCCTCTCGAATTTGATCATAAACA----------------------------------------------------------------CGATCCCAGTGGTAGGCCTCCTAAATTCCAATCTTGCCACTCAGCAAGCTTGTACAATTGGTACTTGAGAATTGCCATTACTCAAATTCCTGTTACTACACAAAGGCAAAGTGAGAAATGA-CATCGTGCTTTTAAAGTATGATTAATTTAGTTGGATGCTTCTTTTCCTGTTCC-ATGGAGGTTAGGATGTTTTCCTACTTTGGGGGATTATTTTACTGGCTAAGCACTATG-GCACCCACAGTCTGACAGTTGTTAACAGTTTTCTGTAGGTTAGAAAATTATCCTCAGTGACTAAGATAagtcattaaaaaaaagggaCCGTTGTTCTAC--TCACAATTGGCAGGTTGAAGAATTTGAGGCGTTTT-------------TTTACTCACATCTCAGGCACACACaatgtcaaatttta-----------------------------------------------------aaaccAGCCAACC----------------------------------------------------------------AGTTCAAAATCTATC-------------ATCTAGGACCTTAAAGGGGATCCCTTCAAGTTCTCTGTGATGATCCCACACTCTTAACCACTTCTCCGCAGTACTCACGAGGAGCCACTCTACTGGAATATCTACTTTCGATTtc---------acagaatttaaaacatcagttCT-GCTGGTGCGCCCCTGGAAATCATTGAGGAAGGT-GTATGTATCCCTGCGGCTGCCTTCTATTGCCCTGGCCCAGTGTTCAGC------CGAACATT--ACCATCTGTATCCAGGTTTTGCTGCTCTTCACTGTTCTCCACT-TCATCTTATCCCTGCAAGGCGGGGCATGTGTGCTACAGTGATGGATTTCTTGGG--AGAAAAGtgtctcctt--------------------tttttgttttgctttattccttcCACTGGGCAGAGGGAGGTCTGTGAAATGGAAGACATTTTCCATCAATGATTGCATCTCTGTTCTTGGCCCCTGCTTCTTTCCTACCCTTCA-CGCTTCATCTGTCCTAGTTTCCTT-------GTGCTACAATCTCAT-AGTCCCAGGTGGGTTTCCTAAGCTGACACACAGCCCAAGGAGAAACACTgacaggaagagggaggagaacaTTCAGTCAAGGATGAGAGGGCTGTGTTAGGCTGGCGGAGCTCTGAgctcttggaagctgaggcaaccCAGACTCCAGCAGAGCCCTAGCGCTCTGTGGATATGAAGAAAATTGGCCAGAACCCACCTCGCACTCATTCTGTGGCCTTTTGAAGTCCAAAGCTCTCTTCCAGATTTCTGCTCACTCTCAGG-----CCCCTCAAGGTCCTTGGCTCCAACTTCTT--ACCCAGCGGCCTCCATCCCACACAGATCAATCACCCTCGGTGTGTGAGTCAATGCCTTCTTCATTTTTCCATTATCAAAATGCAAAAGTCCTAACCCAAGCCTTTCATAGTTTCTAAACTTTATTAAAATGCCCCAGGCAGGTTTAGACCTTCTTTCCCTGTTCCCATCTTGGCTGTTCCTCACCTCGCTTTAGATCCTTCTTCCCCAGCTCCAATTCGTCCTCCAACCATGCCCTGGCCAGGCACCCAAGCACTCTTCAAAGCATCTTCTCTGACCAGAAGCACTTCTGGGAAGAAACTCAGTTGCCAATTACTAGACTAATACAATTTTCTCTGTGCTATTACCCTGGGAAACACTAGAA-TGGCTCACACAAGAGGAAGAGGTCATGTTCTACTGAAACACTGTTGAGAACAAGGAGATGGAGTAACATGATAGGAGAAAAAAGCAGGCAATACTGGATAGGTGGAAAAAGACTAA

a score=43683
s chr3           144313229 1874 + 160039680 AGCTGTGTGCTCACAGGCCACGTTGTAACTTTCCACTTCT-CATCTACCAACAGGGACAAATGCTCATGCCTTGAAAGGTTCTCACAAAGATAGGTCACAAACGTTTTCAGTCT-CAGAGCCCAGCACATACTGGGAAACCAAATAAAAGGCAGCCATGCTGCGTAAAATCATGCATGTGTCCTTTCTATGTAATTATCATTGCAAGCGATAGCAAATGCAATATGCCCTATTAATGATATTGTAAGTTTTTAGCTATAATTAATGGTGTATTTTGATAAATATACAGTACTGATTATTGTTAAATTACAACCAGATCT----GTGAGGCACGGACTTATAGCATTTATTTATCTTCAGAGTGTCAATATTCTCACTTGCCCTAAGTAATTTTGGAGTACCCACATAATGACACCAA--ACAGACTTAGGAGGAGAAGGGTGCCATCTAGAGCCCTGTGTGTATTCCCAGGTCCCCTCTAACAGTAACT-CAGCTTTCTGCAGAT-TATGCAGATACCAAATACCGGTGTTCCCTAATTATGCGCAGGTATCTACTGCCTGAgaggctggggaggtagctcggccttaagtgcttgtatagaaattcaaagatccaaacgggatctccagaacccagtgaggaaagccaggtatggtagcactcacttgcaatccagccctgaagaggcagagacagattcctgaagtctgctggcaagcgaggctagcttacttggtgcgtttcaaactggtgagagactgtgacttcataaaccagggtggataactcctggagaacaagccccaaaggttaacctctgacctttgcatgaacacctgcacacaTGCAAACATGCATACACACGTGCATCCACACATACAAGGGGAAAAGAAGAATTTATTCCAACTAAATCAAGAATAGCCTCTTACAGGCAGCGGGGTTGCCATCTTCCTGCTCGTGCTCATGGGCCTACGGTATCATTCTCTGTTTCTTACTGCAGCTTTCACAATTTTTAAAGAAATGA-CCCCCACTGAGGCACATGTGTGTGTAAGTTCGTGTTTGCATATGTGTGGGGAAGTA-------------CACTGGTACTGAGCTGTGCCCAACCTCCCCTCCAGCCTCCCACTTC---AGTAGAGATTATATTTGAAAATCGGCCTTGACTAAACTCTTCTAATAGCTTGTAACATCAATTTAATGACAGATAAAATAAAGGAAAATTACATTCTCTTTCATTTAAATGCTAAGCCCTTTTAATTGTTTTATTTTAAAAAACTCATTTCCTCTTGTAATTATCAATATATTTCCATCACCCCAGGAAATAAAAAGGTTTCTTTCAAGGGGCAATTTTAACACCTGTAAATCCCCCAGATGTTTGAATGAGTCCGTAAGAGCTGGAGAGGAACGCATTTGTTTTAT-GTCTGGCGGATTCTCAGTTTGCTTTTTATTTTTTTAAATCCTTTCATTGTATTTTTGATTAGTCCTGGATAAATAATGTTTGGATTAAAAATCCCTACTGTATGACTGTGCTTAGCATTCTTGTTGCTAGTCTCCTAGACTCAACATTTAATGAAAATATAAC--AGTTCCCACAAACAAATCA------------AcaaaattggaggggaccagaaggccatttgacttccgacctgtgctttgttaagaagtgaactgagctagagaatagtgccctgatttgcccaCCTGGAGGGCGACCTTTTATGGTTCACC----CACCACACTCCCATCACTCTGTGCATACATAATacacacacacacacacacacacacacacacacacacacacaATAGGAGGGACGTTTG-ACAATGCAACAGAACCTAAAACATTGGATATG---CCCAAAAATATGTCAGAAGAAATGTGATAATAATCACATATTTA
s HiC_scaffold_1 130470613 1551 + 233722169 AGCTTTGTGATGACAGGCAGTTTTTCGAGTCTCTGTTTCTTCACCTGGAGACAGCAACA------CCTGCTTTGAAGGA----CGTCAAGA-GGACTAGAGACTGGTAGAGTAGGCAGAGTCCACCACATACTGGGTGCTCAG-CAAAGGGCGGC-----TGGTTGGTTCTATATgtacattatttatatttaattaacaCTACAAACAATAGTAAACATAATGCACCTCAGTAATCTTGttgtaagtttttatttaaaacc------gTGTTGTCAAAAACATGC--TACCAAATATTGTTAAATTACAGCCAGATACTGGGGAGAGGCATTGGTttatagcatttatttatttgcacgGTGCTGATTCTCCCAGTCTC--------ATTTCAAACTACCAATGTGCTGCCACCCAGTACAGAGTTGGGAAGAGATGGACACAATCAAGAGCCACGTGAACACCTCCAGGTGCCCTCTGACAATAATTTCAAGCCTGTTCAGATGTGTTCAGATGTCAACTGCTGATGCTCCCTAATTACAATGATGCGTTTACTGC-TGAAAAATAGGAAATGCTATTC-------------TGTAT-------CATAGTTCCA-----------CTAGACCCAG----------------------------------ACCAACCTCTTAAAAGG-----------------------------------------------------------------------------------AAATAGGAATG-------------------------------------------------------------ACATCTAATTCTCCATATTTCCCTGATTCCACAC----------------------------------------------------------------------CCTTC-------TGCTCCTGGGCCTCC--------------------ACTTgagttttcttaatttctaaagaGACAAACCCCTGAaggggtgtgtgtttgtgtgtgtgtgtgtgtgtgtatgcgtgtgtgtgtgtgcccacatATTGCACAAGTACTGAGCTattcccatcctcctcctcctcctctatttTTGTGAGTGTGGATTATATTTGAAAATCAGCTTTGACTAAACTCTTCTAATAGCATGAAACATCAATTTAATGATAG-----ataaaggaaaattacattctcTTTCATTTAAACACTAAGcccttttaattgttttatttttaaaatctcatttcccCTTGCAATTATCAATATATTTCCATCACTCCAGGAAATAAAAAGGCTCTTTTC-AGGGACAATTTTAACACCTGGAAGCCCCCCAGACGTTAGAATGATTTGGTAAGAGCTAGAGAggaaagtatttgttttatagtCTGGCAGTTTCtcagtttgctttttattttttaaagtcttttcattgtatttttgattAGTGCTGGATAAATAATGTTTGGATTAAAAATCCCTACTGTACGATTGTACTT-GCAGTCTCCCTACTAGCTTCCCAGACTCaaca-ttaatgaaaatataaCCAGGCCTCAATGTAAGGATCAGCCTGCTCACATACAGAACTCAAGGGGCC---AAAACCATCTCA-TTTCAACTTTTACTTTA-taaggagaaaactgaggcagggaaTGATGCCATGAGCTTCTTACATGGGGTTCGGCCTTTTATGGTTCTCCAGATTACCATCGCCACCTCACTC-------------TCCACACCCCATCTTCTGCCCAT-------CACTCTGAGAAAGTAGGGCATAAATTCACAAAACTCAGCAGAAACTAGCACATTGGATATACCTCCCCAAAATACCAAAGTAAGGCTTAAATACCAATAGTTTATTTA

a score=135106
s chr3           144315799 5561 + 160039680 [encoded data, 5976 characters]
s HiC_scaffold_1 130474096 5379 + 233722169 [encoded data, 5976 characters]

a score=184983
s chr3           144327264 5966 + 160039680 [encoded data, 6494 characters]
s HiC_scaffold_1 130483274 5802 + 233722169 [encoded data, 6494 characters]

a score=53308
s chr3           144333724 3274 + 160039680 TGAGCTCTGCCTTCCTCTAGTTCCACTTTTTCTGGATAGCTCCTTGGCCC-AGCTTAGACATCACAGCCCCCTGAGGGTTCACCCTTAATTCATGAGACCAGAAGAGGTTTGGTCCTCCCATCCATTGGGTTAATGCCACCCAATAATTGTCACACTGCT------TAAGATCTTCCACCTGATGTA---------ATGAAATCAAATCAAGGGAAATCCATAATCAATTGTCTCGTGTGTGTGCGACGGTCAGGGCAAGATTAGA--------CGCAAACCCAACCA---ACCCTCTGGGTCTCTCTTCCAATTCTTCCTCTGTACCTATCAGCACTGCTTCACTCCAGGTGGCCCTTATCCTCTGCGCTGCATGAA-TGGGAGGGAGGGAGGGTTGTATTGTCATTTGCACTACTTCCTGAGGTCTTCTGTTAACTTTTTAACCAAAAATGGTAACTCATCTACAAATACAGATGATGTCATCAACTCACCATCGGTCTGTCTGCTGAATACACGGTTACTCTCTCTTCATCCATCACAATTTGGAGTCATACA--------------------ACGTTGTTTGCACATCACGCTAATCATGTGTATTCTTCCTCAAGTTATTGGGCAAGGCTACAATTCAAACACCAGCATGAAATTCTAGAACTTTCCAAAGGCCTCACTTCCTGAACTACTACTGCAGCATGG---CTGCTCTGAGCTCACCCTTTCCACCAACGGCACGGACTTTGAATGTGGCTGTTTCCTGTCTTTTCCCCA--CCATCTTC--------------TTGACTTTTTTTTTTCCATTCCAGCCCCAACTCTTTCTT-TAGAAGGCAG----AGAGTAAATCTTGCAGCCCAGAGTGGCT---------TCCTAGG--------AGGCAGGTGAAAAGAATTCAGCAAGAGGTTAGGAAAACAACTCTTCTATTTAAAAGACTTGAGAATCAAGGTTTTTAAT--------GTCATGGGttttgttttctgtggtttgtgacagggttcctctatgtggccttggctgtcctgaaatgtgctctgtagaccaagatggcctcaaactcacagagatcgtcatgcctctccg-----tcccaagtgctggaattaagggtgta-------cgccacca---ctgggtctctagctgcct--------------------------------gagaa----------------------------------tcttaattcagTCTGGGTGTGAACTGAGAAGACCTCGCACTAAAGACTAAATGGAGTTTGCAACAAATGCTCT----CCTGAGAATTGATTCCTTCCTAAAATGAAGGGTTAAGAG------TTTGTTTC--GTACAGACAGGACAGAACAGAAAGGGTGGCATTCTCCTCAG-GGGCCTTTCTCAGCTCTAACTGAGCTG-TAACATAAAGGT------TAGGCACAGGAGAGCAGACCCATCTACCTTCGGATACAAATTCAA--CATGGAGCCGGGAGTTCTGGTTTATAATGATGTTCTGAACGCAGATATCTGCCTCGTCCTCCTCCAAAGAATTTGAATAAAGAAGGGCAAAGGTAAGTTTTGCGATATGA-AACCggga--ctggggtgtaaatcagag-gaaagggttcatggctagtgagtccctgggttcgattcctaccagtcctcaaataaaTAACAAGTGAAATAAAATAAGGAAAAGAAAACTGTTCAAGAACAGCAGAGGGCAGCTTGAGGGATGGAGAAACAGAGGCATCACTGCAGAGTAGAGAGCACAGGAGACCCAAGTAGGAGAGAAACGAGACTGAGACTCTACTGCAATAGAGTCTTGGCCCagttccaagcccagagtcaacaaatgcaaagct-aggggtaggaggaggtggcaggga-aggagtgagaagccatgagagcaattaattaaaagagcttcatttggaacagctgaacccatggcgctcccaacccaccccaccccccaccccccatgcctgcggattgcctaaccatt-aggaacttctgccttctggttaaagcttgaagagtttttccctggataaa-agagtgatcttcccagg-----gtcctgtatcagcactgggca--gagattgaagcagagaggagACAGGGACAATGCTGCACTT-TATAACAACTGCCAGCGCGGAAACGTGTGGAGTGCAGCTTCTCTTAgagctggacgtgtaggttagtttgtagacaatttccctagcatggatgaaatcctgggttcaattcccaagaacacaagtttggcatgacagttccagcactcaggaggtgatgccagaaggatcaggagttcagcatcacctttagccatgccgtgacttcgaagccagcctctactgaatgaggcgcctctctccaaaaTTAATTAATTAATTGAAAATAATCAAAAGCTGTTTAGTCTTGAATAGGGTAGCCAACCATTCTGGGTCATCCCAAGAGTTGCAGT------TATGATCCCCAAACACTTGTTAGTGGTTTTCATGT--TTCAAAAAATGATTACAATTTCAATACTACATTATGGCTTCAC-TCACCTATGAATAAATTG------GGCCATGTTTCTTAATCATGGGT-CACGTGCTATTTGTAGACGTTATCATCC-TTCACTGGCCTCTGATGTGATTTAGTGAACACAGAGCCCAAATGGAACAATAAACACAAATGCAAACATGAATTCTGACATTGTTTGCTACAC-AGATGTTCTGGAATCTGGAAGTGATA-TTCAAAAGATTGTCACTAAGATG-AAAACCAGTTTTTTAAATTTCTCTTCAAGGCTCAAGAACTAAGAATATGAATATGAATATATATACATATATATGGGGACACATTCAAAGAATTATTAAATATTTTGTGAAATTAC------ATAAAAAAGGAGAGGgagtaatttacctcagag-aaagggagattagtcagaaagtacaagataattttgctt-aaatttcaattagtttcagtaaagattcatgaggacaattatccaataaccaaaaacaaaatgctgctctcttacggttctccgagaacaaaaaactaattcttggaaacaggaaggcatgatgtttaaatttaaaaactcaCTGCAAAAATCTCAATAGCTGAATGCATTAGGAACAAAATGAGGCGATCTACAAAACTTGGAAACCTATCAAATCTTAGCCCAAGAAGCTAACAAATATGAAATAGTCAGGACTCGTGACGATGTCCATCCCCTGGCAAAGATGCACAAGACAAGCTAACAAGGGTGAAAGTCGGATCCGAGAGGTCAAGAGCCAGCTAGGGGCACCTTTAGAACCATGAGAAGGAGCCTAAGAAGGGAGCAAGGAAGCAGAG-----ACAGAAGACCTGTCTTCTGACCTGAAGAAGCGGGGGAGGTCTTCA-----GAAATACCTACTAACTGGCAAAACA-GTGGGAAACAGTGggaaggga
s HiC_scaffold_1 130489839 3082 + 233722169 TGGGTTTTTCCTTCCTCCAGTTCCA--------GGAAAGCTCCCTGACCCCAGCTTAGGTGTCACTGCTTCCAGAAAGTTCACCAT-----CATGAAACCAGATGAGGGGTGGATTCCCCAGCAGCTATGTTAACTTCAC--AGCAACTGTCTCTCTGGTATTAGTTAAGACTGTTTTGATTATATATAACAGAGAACCAATTTGAactaagaaaaatagataaactaCAGGCTCACGAATCTACACCAATCAGGGCAGGATGAGAATTTGAAACGTGTGGTCAATTACATATTCTCT-----TCCCTTTGTGTTGTTCCCC---ATCTACTTGCTCTGCTT-GCTTCAGGTGGGCCTTATCCTCTA-GCAGCGTAAGGTAGAGGGGTGAGAAGGAGACATTGTCATCTGCTTTACTTCCTGAAGCCATCTGCTAACACTGTAACCCCAAATGGTGGCTTTTCTATAAATACCAATGATAAAGCTAACTACTTACCATTCTCCCTGGT--------CTTTATTCTTTCTGCATCCTTCAGCATCTAGATTCGTAAATACTTCTTAATATACATTACAAACTGTTTACATGCTACCCTAAT--TTTGCATCCCTTCTCAAG-CACTGGACAAGGCTACTTTCCAAAGCTTCCCAAG-ACCTCCACCTCCTTGCTAAGTAACCACTTCCTGGACTGGTA---CAGCATGGACACCGCACTGTCCTT-TTCTGTTCACCCACA----AAACCCAGAACACAGATGCCTTCTACCTCTTGGCCATTCCGTCTTCTTAGTTTTGATTATTTGGCCCTCTGTCCTCCTGCCCAGTTCTAACTCCTTGTTCCAAGAGACAACTATGGAGTATGTCTCACAATCCTAGGAAGCCCACCGCACGTCCCAGGGCCACAGAGTGCGCTCACGGTGAATTCAT---GACCTTGGGAGCCTGGCTGT-----------GACCTAGCAACCTAGCTCTCAAGTCCAGACTGGATATGTGACCTTATTTCCATTGTCCTCTA-AATATTCCTGTAAACATTTTCACCTCCACTGA---GTAATGAACATaataaga-------------acagaaat-attaTGTGTCTCTGTATTCTCTACACTACTGAGCTCAGTACTGTAGTTGTTTCTCCAcaatgtctgattttttaaatttctgactcATTTATGACACATTCAAAGCACATTAGGAGAAAAGTCCTTTGTTTTAAAAGACTTAACTGATCCTTCTTTAATTCAGTCTATGTGTGAACCAAAAATTCAGTGAACTAAAA---TAATGTAGATTT-----AATGTTCTCCCCCCTGAGAATTGATTCCTTCATGGGGTGATGGGTTAGGAATAGGACTTTATTTTGGGGAAGAACAGGAAAGAACAGCAAAGGTGGAAGTCTTCTAAGTTGGTCTTTCTTGG-TGTAACTTCATTATTAACCATGAGGTGGGATATAGTCCCAGAAGAGTAGGTCCTTCCATATTCAGAT--AATTGCAAGTCACAGAACAGGGACACC------ATGATGATGTGCTTAGCACAGACATCTGCCTCATCTTCCTTCAAAGAGCCTGTAGAAATTACAAGAaagctgtgttttaaaataaggCAGCCAAGAAGTAGGGGCTTAGCTCAATGTAAAAGAGCATAT-----GTGAGt-gctgggttcaagccccagca-tccaaaaacagataaataaattgtCAAAGTAGCGTACCAGAAACTGTTCAGAAAATGTAGAATGCAGAATAGGCAGACGAGAAAGCCAGGAATTCCTGGACGACAGAAAGCACATGAGACCAGAATAACAGTGAAATGAAAAGTA---------GCTAGGAAGTCCTGGACAAGTTCCAAGATCAGAGTCAACAAATGCAGAGCTGAGGAGTGGGGGGAGGTGGTAAGGATGGGAGTGAGAAACCATGAGTGCAATTAATTAAAAGAACTGCACTTGGAACAGCTGAACCAATGAGG---CCAACCACCCCCACCCT---CCCCACATGCCTGCAGATCAGCTAACAATTCAATGGCTTTTGCCTTCTGG-----------AGAATTTCTCCCCAGAGAAAGGGATTGATTTGCCCAGAGGGGCGTCCTGTATCAGAGCTGGGCACTGAGGTAAAAGC--AATAGAGCCAGAGACAATTCAGAATTTCCGAAACAGTTGTCAGGGAGAAAAC-TGTGGA--------------------------------------------AATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCCGCTCTACATTGGATAGGATGACCAATCATCGTAGGTTGCCCAGACCGTTCCAGGTTAGAATATAATCTTTACACAATTATTAATAGCTTTCCTTTCACTCTCAAAAATATTCCAGTCTGAGTAATAAGTTATGTAATTGCTTCATCTATGCGTGAAATGTGATGAAGCCTTGTTTCTCAAGCCAAGGTACAGGCACAGTCTCTGCAAATTATCACCCATGCAATGGGCTCTTATATCATTTGG-AAACACAGGAAATAGATGGCATAATGAGCACACATGCAAATGTGGGTTTTGATAATGTTTACTATACTAAATATCCCGGAATTTACAATTGATATTTCAAATGAtagtcattaaaatgaaaaaaaaattttttttaattctc-tagaGACTCAAGAGCTCCTAAGA-------------------ATAAATATGGAAACACATTCTGAGAATTATTAAACATCCcaggaaaatatgaaagaaaaaaaaagcagagggatCAATTTGCCTCAGGGAAAAAAGGGATTATTAAGAATGTAGAAAATAACGTTGCTTAAAAATTGCATTAGTTTCAGAAAAGATTCATGAGGACAATTATCCAATAACCAAAAAGaagatacta-ttttttaaagtgctcagggaacaaaaaaataattctcagaaacagaaaaacataatGTCCAAA-AAAGAAACTCAGTG-GAAAATTGAAATCACTGAATTTATTATGGATGTATAAAGGAAATGTAGAAAACT----------------------CTAAAAAATCAGCCAAAATATAATA---------------------------CTAGCTAA-------CAGATAACACAGCAAATATGGGATCAGTAACAGGGGGGTCAGTAACAGACTAATGAGAATTTTAGTAGCAAAGGGCACAGACTAGAAAGGGAGGAAATAACCCAAGATATAATATAAGAAAAGTTCTCTAAACTGAAAGAAAGACgtgaatctttaaatttaaaaggctTGTTAAATGATGAGCAatgtggaaagaagaaagaaagaa

a score=14385
s chr3           144345117 2080 + 160039680 taaaactaacAAATTGAAACATTTCATTTGTATTCTCTGAGGCAGAAATAGTGTCCTTGAAC--AACAAAATGCCTCGCATTAATGGGACAACAGGGCGATGTCCTCGTGCCAAAGAACATCCCAGTTCTGCACCGCCAAAGATCTACC---------AAAGATCTAACCGGCAAAACCAGAATGGTCA------------GGTTCCTTCACCTATACCTCTTTTTCTCCAGGGGGAAAATTGTGCATTCACACCTGAGGACTTGTGG-GTAAGGGCAGAATAAATTTCACCTTCTTTTCCTGTG---------TTTGCAAAACTAA-CAGGAAGGGGAGGTTTGGCATGCAGGCCA-AGTTTGATGGTAGAGCT---------TGAATCTCAGGCGCTT---ACAGAGCAATGTAGGGGGGCAGCCTCTGTTTGAGGAGGGTAGAAC--TGAGCTGAACCCCGTCCTCCCAAGGCTAAGGGATTCCCAAGAACGGGAAGAGCACAAGCAGGGAGCATTTCCACCTCAAACCCTGCCTAGGTAAGGAGCACTCCCACTTCCAGGGGAAGCCCGGCACTTTCCTGGCTTCCCCGTTGCTGC-TCAAGAGCAAGCAGCCACAATTCATGCCTTGGGAGAAAGATTTGTGCTTTCAGAGCAAAAAT--------GAGTGCAAAGCACCTTGAGGCGCTGACAAATGATGCTGTTGCCCATAGCTGCTGGACCGAGTTCTTCAAGTTATCGTCCCCCAGATAAACTGTCACTGGAGACGGCTGGGTAGGGAGAAGGAAGGTTCTGATGA------------------GAGGTTAAG---CTGGGTTTTCCTGCCCAGGAAAAGGCAGGAGAAGGAAG-----GTGTGTAGTGAGACGCTGTCCCCCCTCCCACAAGC---------TACTTTA--CAAAGCTTTGGAGCAACTGCCTGAAGTGAAAAAGTCAGTC-TTCCATCTTCCAGATGAGAACAGAGAGGCTCAAAGATGGAATAAAGTTCTGAAGACGGGATACATCATTTGTTTAGTGTGCAAACACCCTCCATTTGATCCCTAAAGCAACAGCAAAAGAGAGGTCCTGACACTTGCATATCTCTGCTGTCTACTGTTGTATTACTTAAGGAGTCATCACCCAAACTTAAAGGCTTAAAACAGCAGTGtcggttggcatgtaggcacctgtctagcata-gtgacgcctggggttccgtgcccagcatggcataaaccacatgtggtgtggcaaatccatagtcagcacgcaggagtcagaggcCATCTTTTGGATACAATATGAGTTAGAGGACAATCTAGGTTATGTGAGCCCCTATGTAAGGaagaataatccattatttctcatggtaatgtaagttggccagggtttagctgcacagttttcctgATGGTCCCAACTCATCTCTACTAAGTATCACCCACAGGGCAGGATTCTTGCTGGGGACAGTTACAAGGATAGATACCACCAGATGGCTGAAcccgtgcccctgcccccctctctccctcttccccttcgcctcccactcccTTTTGACTTATAAAA------CCTTTCAAACAGGACTGTCAAATATTTTCTATGGCTTCTCAAGCCTCCAAA-----GATTCAAAATGCCTCAATTCTCTGAGAGGTTCAACCTCAGACTGGGTCTACATGCTCAATACAGTCTATTAACCATGACTGGTCATGAAACCAGCCTGAATGTGGAGGCACATCTCAATACAG-ATACTGACAGGAGCTTGCAAC-ATCTTTATTCTACCGTACTGCCTAAAGTCCCGCAGAGTGATGGCCCTAGAACTCTTGACAGGCTTTGGTGCTCCCAGTTCTGTGACCAGGGGGGCAGGAGGAAAGCCAC--------------------GATGAAGGACGTGATACAAGGACAAAGACACTGGACACT-------------------GAGAGGAGATGAGAGACATAGGTCCCCATGAAGGGAGAGAACATCCATTCAGGCC-ACGCGGATGAGGTAAGAGCTGTTCTCCTGGGTCACGGCTTCTGAGCAGATTCGGATCTCCAAATGAGAT--CAGAGCCAGCAGAACACTAAGCATGCATTTAGAGAGAATGAAAACGTCAGGTTTCCAACTCCACTCCA-GAGTCACTAGTGGTCGGTGATGAAGGAAGATG-----------------TGTGTTGTAGACCCCAGAACACAGAGCCCACC
s HiC_scaffold_1 130496007 1821 + 233722169 TAAAAATAGGGGCATGCATTGTATCATGTATATTCTGCAAAGCAGAAAGGCCAttcctcaatttaaaaaaaatcattg-actACTGAGTAGATAGGAC-ACATCCCTGTGCATAAGAACTTCCTCATTCTAGGTCAGATAAGATCTGCCTGGGCCAGAAAGAAACTAATTAGCTGGAATTGGCAGGTCATCTTCAAGCCCAAGCTTCTTCCATTGCTATTCCTTTTCTCCTGGGGAGAAATTGTTGGCTCCCAAATAAAGGCTTGAGGAGTAACTGCAAAATGAACTTTGGCTTCCTTTCCAGTCCTGCGATACTTGGCAAAAATGAGCAGACTGTGGAGATGTAGAGTTAAGGCGAGAGTAAGAGGGTTGAGATGATGTACAGTGAAACTGATGTGCCTGCTACAGAGGGAAAAGGTCAAGCGCCCTTGGCCGGAGCATGGCAGAGTCTTGAGTTGGGCATTGTTTTCCTAAAGCTAACGGTTTTTAA-----GGCAGGAGCCCAGGAAGGCA-CATTTCTCCCCTA-------------------------------------------CAGAACT-------CTTCTCAGTCACTGTGTCTGGAATCTGCTGCAAAAACTTCAGCCCTGGGGAAAGAGATTGTAGTTTC----CCAAAGTCTCTTCTTAAAGGCAAATAGCCCTGAAGCACTAACAAATGAAGCTGCTGCCCATGTCCTGTGGGTAGAGTTTTTTAAGTTGCCTTCTCCAAAATAAATTGTAGGAAGAAA----TAGACAGGGAGAGGGAA-GTTTTGATGATTCTGGATTCACCAATCGGGAATCAAAAGCCtggaacttacaaccttgcaccaGAAAGGAAAGGGAGGTAGATGTACCTACTGAATGATTAT---ACCTCCCAGGTGCACTCTTGCGCACTTTATCTAGAGCTGCATAGCAGCCCCATGAACT--ATATATTACTCTTTCCATTTTCCACAAGAAAGTAAAGATGCTAAGAGTTTCTGCAGGGCTGGGGAAGTGG------------------------------CTCCAT--------------------------------------------------------------------------------------------------------------------GGTGgac-------cacttgcctagcatgcatgaggccctgggttcagtccccagcat----------------------------------------cacaaaactTAGTGGct---------------------------------------------------------tgaaataataatttattgattCTCATGATTATGTGAGTTGAGTAGAATGCAATTAAAGAGTT---CTGATGAT---------------CTATGGGTCTCTCTCATAACAGG-TGCATGCTGGAATTGGATGCTGG-------------AGAGGTCAGGCCTTGT-----------TCTCTTTCCATA--------------------------GAGTTGTAGGGTTTCTCCCTCTTTGGCAGGATAGCT--ACTTCTCATGTGGTAGCTCAGTGCTCCCAAAGGAGGAAGCAGAAACCTCTAAGCCTATTAAAAGCACA-------------CCAGCAAGCTCACCAGATTCTTCTGGTCAAAGCCGATCACAAAACCAGACTAGATGCAATAGCACCtgtcaaagaagaaaacaaaaagaaatttgccACTATCTTTAATATACC--AATTTCTGAAGTCGCACACAG----------GGGATTTTTAACAAGCTTCGGTGCTTCTGAATCTGTGAGGTGCGGGGCAAGAATAATGCTGCAAAGAAGACTCAAAGGTATAAAGGAAGGGAGGGACAC-AGTGCAAAGACAATGAATAGCTGGGAGAATGAGTAGCTGGGAAAGGAGGCCAGTGAACAAAGTCCCCAGGTAGCTGAAAAACA--CATACTGGCCTGCATGGTAAAATTAAGTGCTGTTCACC-------AGGCTTCCAAGCAGACTGAGCTCTCCAAA-GAGATCACAGAGTCAATAAAACACTGCACACGCATTCTGAGCAAAAGAAAATGTCCTAGTGCCCTCTGCAGTTGAGGAGCCATTAACAGGTGGCAAGGCAGAAAGACACACAGATATATCAATGCTGCTCTGTGGACCCCAAATCACAGGGTCTGCC

a score=91620
s chr3           144347419 3280 + 160039680 gcaaaggaggcctcccagaagaggtgacattgggacaaagactaaagaaggtagcaaagcaagttctgtctgtatctaagg---------------ctgtggaagctggcaag--caaagcctggagctagaacacacc--------tactatgctcagaacaagaagccagggtagACAGATACCCACCCTTTGGCTCATGAGCTGACCAATGTTTAACAAATTCTGCTGCTGCTCCCTAACATTGTCCTCAGTCCTGGACACAC--------------------------------------CTAGAAAGGAGGA---GAAAATAAATGCCCAGACACGGTTTTAGCAAGCATGGCGGACTGTGAGTATAAGCATGTCTCAAAAGGCAAGCTGCCCAGCTCAGCTGTGAATGCCTGTTCTCCATCCATCTCTTAATGGATCAGAGAGACGAGGCTAGGGTTTGGTAGTTGACATAGCATCAGCCCATATCCTCAAATATTACAGAATTATAATTTTTATTAAATGCAAATTTTATTATGGCATTCTAAAGTGAAAGTGCAGGGTAAACTGCGGAATATAATCACCATGTAACTATCACTTTGAATTAGTGCTGTAGATACTTCTAACTGCttaattatttatttttaaaatatattccaatattttaattatGTTCAGTTAAGTGTACTTGAATATTTGCAGCACTCTGCATTATTTATATTAGAGAAAAAGCAGCCTAAATCAACTTGCCCTGGCATTTCATAATTTGTGCTTGCATATCTCTAAAATAGATTTATATGTAGCTATCAAATGGTTATTTGGAATATGCTATGATTTTAAATTTTTATCTAAATTTTATCTTAATGTTCCAC-AAAATCAAATTTATTGATTCCTTTTTACTA-GTATGTGTCTTATCTGATTATTCATATTCAGTATGTGCAGAATCCTAACTAGAGCTgtactagttagtactagtacaactgtagtactagtacagtactagtagtactggtagtactgtagtGGAGGAGCTGTAAGTAGCTCTTCAATTAAATACAAAGGTGTAGGGTTCATCACACAC-CCTCACCTCCGCTTCACTTCCACAGTCCCTGCTCCAATCCTGGGCAAA---TCAAGAATCAACTGC------------------ATCAAAGGGACAGAGAAAGGGAAACTGTGTCAGTGTGGAACACTACTATGAACAGGAAGAAGGGAGAGATCGCAAACCCCAGGGGAATTTACCATCCTGTGGAGAGCGCAAAGCGTAGCACAGCCTGAAAATGAGGAGCCACGAGGAAA---TGACACAGACGGGGGCTGGACGCAGAACTGTGGGCGGGCGACACAGATCTGGCCTGGAAAATAATGCAGGCTGCTCTGGTGTTTGGTAGCTGTCCAACATCTTTCCCAATTTTTAAATTCATTTAAAAGTCATTTCAATCTAAAGGATAAAAATATTAAAGTTACAGTATTTCAATAACCCTCTTTATGTCCTGCAAATCTAATAGACAGACGCCCCAGAAAGAGATTACCGCTTGAATACTTAATCCCAATTTGGATGTTTTTTAAACAAGGCAAACCTGGACTTAAATGCAATGTGCACAATTTAGCTAAGTATAAAATATTAATGCACAAACATGACTACAAATACAGCCAGAGAACCAGGCAGGAGGAGGCCACCCAAATCTGCCTGGGCACATCACTCTCCCAAATCAAAGGCTGGGTGGGTAATGAACCTGCCAGTTTCCAGGATGGCCGTGCAGGTGAATT----GCGACACATCAGCTCC---------AGCTAGGACTGGAGGACCA-GGCCGGTTCAGAGACTCGGGCCAGGCTAGCAGTTGTATTCCAAGATGGTTTGCTTTTTCCAGCGTCTCCTGTTTC-----CTTGGACTCTCTTTGAAAAAAGGAACAGCATATTCTCTGTGCTCAGGGCT---AGTGTGCCCCCACGTGCACAcagtaggaca---acaagctctggttctgaagtcagatgtcctggctctaatctctctgccctgcaacccgtgttagctgggctgccttgaagaaatctctaaatatcactgtgccccactcggtttcctcGGATGCTCGAGTGGCACAA--AGTAACAGAAGGATCCACGATGCAGAGTCATTGTGCATAACAGTTGATGAGGGAAGACTTCTTATTCAGTGGTGTAGCCACTGGCCAGGTGCATCTCTGCCTGGACACAGAAGGGAGCAGAAAGAGACTGGTTAGAAAGAGAAGGCAAAGAGTGGGTGGGGGAGGGACAAGAGGCGGTGTCAGGAAGTACATATAATCAAAACACATTCCGCACATGTAGGAAAATATCATAAAACCTGCTCTGTACAATTAATTAATACATACTAATGAAAGATTTTAAAAATAAGAAATACGTGTAAACAAAATGGTGTGTCTTTTTTTCCCCTCCTTTGCCCATTCTCAGCCCTGTTCT--TCTGTACCCTTTGCTCTTGATCCCCCATGACGAGCTCTCAAATAAGTGAATTCTGGGTACAGACATTGGAGCAATGAACAAGCAGGGTGTCCTGGCA-----AAGGGCAGCTCCTACTGTGACTGGGATGCTGCACCCTCCGGGGGTGACCTAAGGGCAGGCAGACTCTTAGCTACTCCTGGCACCGGCTCTGCACACCCTTAGTGAATAAAAT-------------------------------GAGGATGGGGGGACAAAACAGGAA--------TGCAGGAATGTGCCTTTCTGCT--------GGTAGGCAACTGTAATCAGCCTGGATTGTGGTAAAAGCCGGTACTTAAAAACCCCTCACCGTCCACTGCT-TACCTTACAATCAAGACCTATTTGTATTTTGCACTAAATAAGCCAACAAAATCATAAATCTCACAGTTTTAAATTTTAGTCTTGTGATAGGAACGTCACAATGATCAACA----------CTTCTGGAAGTGGATGTAAAATCCACACAAGAACTAGAAATGTCAGTTGTCAAAACCTTCAAGGGTTCTGTTTCTCTCTCAGGAAACATCAATAATTTCATCAATAATTAGC-TGATTAAAATATCACAGTTTTGTCTTTACCAAAAAGAGAACTTGTTCCTCTCAGCT----------------CCAGGTGGCAG--AGTCTAAAGCTTGAA--------GTCC---TGTCCCTATAC----TCCAGGGAGGAAGGGACAC-ATTCACCTCCCAGTGAGAAGCCAGGA-CACTAG--------CGCCTCT---------------CTCTCTGACTAGTTTCCTCAATGATAAAACTGTATTATTTTTCTTAACCTGTTTCATGAGTC-ATGTAAAGACTAGGTAAGTGTAAGATATATTGGTGAAGTAGT---TGTGTGTTAAGTCCTT-GAAATATTAATGTCGAAATCATATTATAGTTCATATATTTCCTATGCAGAGGGGGGATTTCTGGCAAAAACATCAATTCTGC
s HiC_scaffold_1 130498873 3119 + 233722169 gtagAGAAGGCCTCCTGCAGAAAGTGATGCTTGGACACAGACTGAA-CCGGTGAGGGAGCACCTT-TGCCTGTGTTTGGGAAGAGATCGCTCCTGCCAGAGGGAAGAGCCAGGGTCAAAGCCTGGGTGTGGAGAAGCCCCGGCCTGCTGCGGTGCTGAGATTGGGGAGCAAGGGTA--CAGAC-TCTGCCCACTGGTTCTCTACCTCGCCAAAATTCACTAAAGC--------GCACTCT-------TCACCAGTCCGGGGCAAACAGAGGCAGCCAGGCCTCCACCCTCCAGGAGTGGCTGCTCTAGAAAAGGAGGCAGGCAAACAAAAATCCCAACATGGCATTCAGGAACGTG----ATAATGGGTGTAAGGGATTCTCAGCAGGCAAGCTGCTCAGCTTAGCTGAAAATGTCTGTTCTCAgtccatctgttgatggatcAGGGAGGCAAGGGTTGTATTTGGTACTTGAAATAGAATCTGCCCATATCCTCAAATATTACAGaatcataatttttattaaatgcaaattttattaTTGCACTTTAAAGTGAAAATGCTGGGTAAACTGCATAATATAATCACCATATGACTATCACTTTGAATTAGTATTGCAGATACTTCTAACtgcttaattatttatttttaaaatatattccaatattttaattatgttcaGTTAAGTGTACTTGAATATTTGCGGCACTCTGCATTATTTATATTAGAGAAAGAGCAGCCTAAATCAACTTGCTCTGGCATTCCATAATTTGTGCCTGCACATCCCTAAAATAGATTTATATATAGCTATCAAATGGTTATTCTGAATATgctatgattttaaatttttatctgaattttattttaatgtaccacaaaaataaaatttattagttttttcatattatttatgtgtcttatctgatttttcattttcaatatttACAGAATACTAGCTGGGGCTATACATG------------------------------------------------------------------------------CCTCAATTAAATACAAA-TTGCAGATTTCAGGACATACATCCTACCCCCACTCCATCTAC-----CCCTGCCCCATGCCT--GCAAATATTTAAGATGTGGCTGCCACAGATTCTCCTGGAAACCCAAAGGAAAGGAGAACGGGAAACTGTGCCAGCTTTGAGCACCATTACAAagggggagaaggaagaaatcaaagaCCTCAAGGGAATGCACTGTCCTGTATCAAGCGCATCGCAGATCACTACATTAAAA--AGGAGCCAGGTGGAGAAGCTGACACTGATGCGGGCTCTACTAA------------------------CTGGCCTGAAAAACAAGGCAGGCAGCTCTGTTCTTTGGTATCTGTCCAAAGCCTTTTCTAGTTTCTAAATTCATTTAAAAGTCATTTCAAtagagaagataaaaatattaaagttatagTATTTCAATAAACCTCTCTATGTCCTACAAATCCAATAGACAGATGCCCACTAAAGAGATTGCAGCTTGAATACTTAATCCCAATTTGGATG-TTTTTAAACAAGGCAAACCTGGCCTTAAATGCAATGTGCGCAATTTAGCtaagtataaaatattaatgCAGAAACATGACTATAAATACAGCCAGAAAATCTGGCCGGTGGAAG----CCAAAGCCACCTCTACACATTGCTCTCCCAAATCAAAGACTGGG--------GGACGCACCCGTCTCGAAA------GCGTGGGTGGATTGTGAGTGACACCACATCTCCAAACCTGGAAGCTAGTGTTTCAGAATGACAGTGATTTCAGAAACGAGTGCTGGGTTAGCACATTTatgcagacagggctgggtctcccaa----cttttgtttttcagactttctctctctttg-gaaAAGGACCACTATATTCTCAGTGTCCAGGGTTGTGGGTG-GTACCCAGGGCAACACAG-AGCACACTTGCAAGC-ATGGCACAGGAGGCGCATTGCATGGTCCAAATCTCT---CCCTGCAACACTTTCTATC-AGGCCACCTAG-ATACGTCACTTAAT-CCCCTGTGC----CTCGGTTTCCTTTTGTGTTCTTTTGATAGTAGTAGCAGTAATAAGAGCCACAACATAAAGTCATGGTG----AGAACTGAGTATGGAACA-------------------------------GTGCCTGCTTTCATGAGAACAGGATTTCGC--------TCTTGTTACAGAGGTTATG-ACAAAGTCGGACCGGAGCTGACCGGTGCTTCTGTgtggtggta----------------------------------------------------ctggggaatgaGTGAGCTCTCAC------------------------------------------------TCCCTTCTCACGCCTCTCCTTCCACCCGCACCTCTTTCATGCTCCTTTCCCTTTGCCTTT--CTCATCATCACTA--TTCCAAATAAGTgagttc----aataaatattgtgg-----------------gGCCTGCCAGCCCCAAGGACAGCTCTTGCTATGA----GAT------------AGAGACAACAAAAGT---GGCAAGCTCTTAGCTACTCCT------AGCTTGGCACACATTTGGTAAAGGAAACTGTGCTTGAAACAtatagaaagaaggaaggaaaggaaggcgagagaaaatggaagaaacaggCGGCAGGAATGTGTCCTCCTGTCCTTGGAGAAGTTAACAACTAGAATCA--CAGTATTATGATGAAagatggtattttaaaa----taactgcccTTTGCGATAACTCATGATCAAGGCCTATTTGTATTTTGCACTGAATATGgccataaaattataaatttcacattttgcaATGTCATTTTT------GGAACAACACAATAATAAACATTTCTATTCTCTTCCATAACTGGGAGTACAAGtcatataagaatttaaaatgccAGTTA--AATAACttcaaaagtt---tttctttctc---------caaaaatttcatcaaaaagtGGTACAATTAAAACATCACAATTTCCTCTTCA-CAAAAACACAACTGTGTCCTCCCACCTTGATTCCTCCTCTAACTCTGGCTATAGCCACTTCAAATCTGCAATGGGGAGCGTCCGGTTGTCCCCAGTCTCCTTCCAAGTAGAGAGCTAGACAATCCATCTGTAAGTAAGAAGCCAGGATTACTAAATTCTCATCTCCTCTCTATTCTCCCCTGAACTCTTTGACAAATTTCCTCGATCATAAAAC---ATAATCT--------CTGCTTCATAGGTTGATGCAAAGATCAGTTAAG-----AATATACTAATGAATTTGTTACTATATAATAACTgctcaaaaacattaatatcacTCTCAAGTCATCATTAGTGCTTTTACTAAGCATTGAGGTGATTTTGGGCAAGTGGTTTAACTTTGC

a score=200848
s chr3           144352374 7681 + 160039680 [encoded data, 8259 characters]
s HiC_scaffold_1 130503484 7271 + 233722169 [encoded data, 8259 characters]

a score=258790
s chr3           144361597 10942 + 160039680 [encoded data, 11985 characters]
s HiC_scaffold_1 130513011 10399 + 233722169 [encoded data, 11985 characters]

a score=254157
s chr3           144373357 7335 + 160039680 [encoded data, 8116 characters]
s HiC_scaffold_1 130526117 7311 + 233722169 [encoded data, 8116 characters]

a score=121535
s chr3           144380840 6196 + 160039680 [encoded data, 6951 characters]
s HiC_scaffold_1 130534008 6150 + 233722169 [encoded data, 6951 characters]

a score=31381
s chr3           144389433 2165 + 160039680 GCCTGGATACCAGCACTTCATCCCTGGACCAGGGTGCATC-------CAGGCCCT-GCGGCTGCCAAAGAGTTCAGCACACCAGACCCCTTCCAAGCTTCTACCCCCAGTGCCTGCATAGAGACATCAGGAAGCAGGAGAAACAACCCCACCGTTGAGTAGCGAAGGCAGTT---CCCGGTAGCTATGGGCTTCTTCCTTCAGGAAAAAGGTGGCTGCAGTCTCATAGCCATGGAA--------------CTGAAGCAAAGAGGGGGCTGAGCTCTGTATCTCCTGTTCTAGACTCTACTTCACCACAACGGCTTTTCCA-GCCACAACCCAAAGCAGTATGATGACCTGTTAGCAA------TTAGCCACGGGTTGATTTAAAAATTATTC---ATTAGCCTCTTCACCGCTATCTACCCACCTCAAGATTACATGTTGTCACTACCTTACCATTCTGTTTCAAGGGGCCAAGATCAAAATCTCTCCCTGAATGGCACTTAGCTTACCCGTTATAAGGGTGCTCCAGGGTTTGCTATGA--GGGCTCTTTAACCTAGTATTTGCTTAAGTTCCCTGTCCTATTGGTTAAATGCATCCATCTCTAGATTGCAAACTCTATTCTACATGCAGGAaaacaaacaaacaaacaaaaaaacCCGACAAGCCCACCATGGCTCTGCTGCAGCCAG--------------TGTCTGTCATACATCAAGATCCATTGAGGTTTAA----CAAGTTTC------------CATGCACACCAATCAAAATGGGTCCCTGTGGGGGGGGGGGGGACACACCT---CCCAAATAGGTCAAA-----TTTGCTTAT------AGTG----CAAGGCTCTTCA--------------TTC--------AGCCAAGTTGTCAAATTGTGACTGAGGCATGAATACAAGTGC------CTAAGTACCAACGAAAGTCAGAGAACTTGATATCAGGAGGGGACCAGAAAGGATGCAGACTGTGACAAAGCCAGTCTATTG------TTCCTAGAGACAGCAGAACACCTCAGCTCTAACCTGCTCACTGTCTGACCTACCTAGGTATATCCTATCCATGTTACAGAACAAttgtttaaaggttttaaaaatgcacgtgagtgtgggtgcacgcatgcagaggccagaagagaatgtcagatcccccggagatggagttctaggccattgtacagatggtgctggggactcaccatgggtcctctgcaaaaggagcaagcgctcataaccactgggccatctctccagccccACAAAATACAATTTAAAAATTTGCTTTTCGAAAGCAATGGCATCCCTCTTTCAATGATG-AAGTGACAATATAAAAACTAAATTCAAGATGTCTCATGGCCTCCCTACCATGGA----------------GAGAGATGCAAGGAAAGG-----------GTGCCGGAATGGGCTAGGCTTGTGGCGTAGCTCCCGTGGAACACAAGATAGGCACAAACCTCTTGAAGCGGTCGGAGTCCAAGGTAAACTGCTTCACAAACACTCCGCCAATAATAAAATGTTTTG-AAAAGCACTTAAGCTTAATGGGTTGAGGTGTTAACTCAGTGGAAGCGTCTGTTACTATGGAGAAGGACTTTTCAACAACACAAGGATGCCACAGGCCAGAAAAGAAAACGCCATTAGGAAGAGTCACACCGCTCAGAGCAAGCATACAACAAAG--------------CCTGGTCAGGCCCAAAAG-AATATTAAAAGGAGCAGGGAAGGACTGCCAGTAAGAACCAAGATGGTCTTCGCATTCCAAAATGCCTTGTGAGTTTCATGGGGCTTCCTGATTCCCAGTTCTCT--------------GGGCAAACCCTCCAGCTCGAAT-----GCCTAGTTATCAGATCAGACATG--CCAGTGGCC-AGGTCCA-----GACCTCCTAGAGTGTATGGACCTGTG---TGCATGTTCCCCTGCTGGC-TTGTGGGTTTTCACAGCATACTCTACCGACTGACTCACTGACACATGGCAGGCTATAGAGATGTCCTCAGGACTGGGAAACAACCTGTGAAAAAGGACGACTTGATTTTCCCT--CGTCTAAGTGGGTGGTGTCATT-------------CTGTCATTTCCTATGAGATGAAGTCT----TTGAAAGGATTCCTGTCTCCCAACCATCATCAA---CACTGCCATACTCTGAATGCCCATGTTCTACCACCAGAGCCATTTGTCAGTCTTCCTTGGGGCAGTGCACCTGGGAGCAAACTGGTTCATGCTAACACCAT-TAACACACGCACTCCCAAAGGTCTTCTATGGTGT---GAAACACTGGGAGGGGCCAAG
s HiC_scaffold_1 130541841 2034 + 233722169 GCCAAGGTGCAGACTCCCTGTCCCTGGGCCCGGCCACAACTGGACCTCAGGTCCTCGGAGACATCCAAGATGGCAGCAAACTAGGCCTCTCCCAAGTGTC-ACCCCTA---CATGCGC---------------------------TTCCCCTGCTGTGGAAAGAGAGCAGCAAGACCCAG-----------------CTCCAGGAAAAGGCAGGTTA-AGTCTCAGAGTAATTGAAGAGCGGGAACAGGATTGGAACAAAGAACACCACAACCTC-GAGCCTCCTGTTTTGTACTTGATTTCACCACAGTGGCTTTTCCCTGCCACAGACCAAAGCAATAAGGTGATTTGA-AGCCACCACGTTTAGCCACAGattgatttaaaaatcattcctGATTAGCCATCTCACCACTATCTACCCACCTCAAGATTAGATGCTGCCACTATCTTAAAATTCTCTTACAAGGGCCTGAAATCAAAATCTC---CTGCATGGTATTTGTCTCACCTGTTTTGAGTATGCACTGTGGTTTGTTATGATGGAGTTCTTCTTCCTAATATTCGCTAGAGCCACCTACCCAGTTCGTTGCAGGCATTGGTTGTTATATTGCAAATCCTATTCTG--TGAAAGAAAATCA---------CAACAGCATCTG---------TCATGGTTTTATTACAATCAGCCCCTCATCTATTATATCTACCGTACACGGAAGCTTTCTGATGTTTAATTCTCATCCTTCTCTCACCTTACTCATGCACACAAACAAAACTGGGCTTC------ACAAAGGGCTCCAGACTCGTGCCCTTATGTTTAAAAACTGGTGTGCCTATTTAAGTAATGTTAACAAGACTATTAAGAAATAAACATCACTTCCCTGAGATAGACAAAATATTGCATCATGATTATAACACGAATGTACACACTGTGCCCTAGCTGCCAACAGAAGCTAAA-ACCTTGATACCAGAAAGGTCACAGAAAGGATACA--------------TAATCCGTTGGCTTTTTCCCTGGA-----CAGAGCAACACAAGACAAACCT-CTCTCT---------------------------------------CAGTTCTCTA-----------------------TGTGGGTGCTC------------------AGGGGGGCAGATTCT------------------------------------------ACTCACTA-----------------------------------------------------------AATTTAcagctttaatattttttttt--aaaggaatgatGTCTCTCTTCCAATCACCCAAGTCAAGATGTAAAAACTGAAATTGAAATTCCTCATGGCCTCCCCTTCAAGGGCCTCATGTTGTTGGGTAAGAGAGCCCAGGGAAGGTGGAAATGTGGGCGCTGCAAAGTTCT-GGCTTGTGGCACTGCCCTTCTGGAATACAAGGCAGGCACAAACTCCTTGAAGCAGTCAGAGTCCAAGGGAAACCGCTTCACAAACACTCAG-CAGTAATACAATGTTTTGTAAATGCACTTCAGCTTAATGGGCTGAGGTGTCCAC-CTTCGGAAGCTTCTGTTACTATGGAGAGGGACTGTGTGGGAACAGAGTCATGCCAGAGG---GGAAAGGGAACACCATTAGGAGGAGTTGTGCCCTGCATGGAAAACACACTGCAAGGAGGCCTTCTGAACCTCAGGGCAGCCCTGAGGGTGATGGTGATGATGTCAAGGGACGCCTCCCTGC---TACTGAAAAGTTTTTTG-ATTGCATACTGTCTTTTGGGTTGAATCGGACTCCTCCATTCACTCTTCTCCCTGAGCCTGCTACAGACCAAACCTTCCAGGTCGAGCCACTGTCCTCCTCATTCTTCCAACCATTGCTCAGCTGCCGAGGACCACACCTGACATTCTAGGGAACACGGACTGGTGATCAGCATG-GCACCTGCAGCCATCACAGGCTTCCATGTCATTCCTT-----CAGACTCTCCGGAGCACAGCAGGCCACACCCGTGCCATCAGGCTCAGGAAACTGTTCTC-------CATGTTTCAGTTCTCCATGCCTACTAAGCTAATAATCTCAATGGCTCTTCCTACACTGTCCTTTACTGTGAAGTGAGGCCTTGCATTTAGAGGATTTCAGGCTCCAAACTGGCCTCCATTGCACTGGCCCCCACTGACTGGTC---------------AGCCATTC----GGGTTCTTTGGGACTGTTTACCT-------------------CCAACACCATGTGACACATGCATT------GGTCTTCTGTGCTTTAACAAGACTTTGGGAGTGGCTGAG

a score=232459
s chr3           144393202 8452 + 160039680 [encoded data, 9299 characters]
s HiC_scaffold_1 130546664 8441 + 233722169 [encoded data, 9299 characters]

a score=15305
s chr3           144401647  998 + 160039680 AAGGTAGCAACCAAAAGTTACAGTCTACC-TACTCAAACCCTGGCTTGACACCATCCCACTATTTTGAAACCCTCCAGGAGAACCTGGGAGGCCCAGTAGCTCGGCTACG-------GAAAGAACCGTCAAAGCACAAGAG-AGAACAGATTCTCTGATCAGACTCTTCTACCTCAAGAAGTTCCA----ACTAGGAATCGCTGCCCTAATTTTCACTTTGGG--GATGAGGAGAAGGAAAGGGGGGAGTTTCCTGGACAGAGT--CCTCCAGGGTTGAGGTCATCCCTT-TATTGGGGGCGGGTAGGAGCTCATTGCTCCT--CTAAGCTTCAAGCTGGTTCTGGGCTGACAGTAGTTATTAATTAGGTCTGGC-AAACTGAGTGGGTGCCGGTGCTGACAG--------ATTTACACAGTGTGTGTAATCAGTTACGAAACTAGATACCAGCCAAGGCTAGCCCCCCAACCAACCCCACCCTTTAGGGGGGCTCTACTGCCTCCAATTTCCCACTCTACCCAGCCTCTGGCAACAATGTTGCCTGGTTCTGAGCCCCACCTCTGCCGCGGCTCTGATCCTCACCCCTACACCCCAGCCT--GTTTTCTGTCTTCCTTTTGGGTTGTGATTCACGGCAGATACTAGAAAGGAAATGGCCCTCTTC-ATCCTTTCTACCACCGCTCTTATCTTTACAGGGTTCTTAC---------------AACTCATTTATGTGATGTCACACACGGACACGCTGTCACCAAT--------CTGCCACAAGCACCGCCTTCAATATAGGAAAGCTCCAAACAAATGCCAT----TCTCCATGAGGACTC----CCGTGGGCACAACTAGGGA--------------CCAGTTAACAGTAATGGGGGGCAGGGGAGGGGGGATATTTGCTTCCTGGGGCAGGTGGAAAG-TTCTTTACCCTCCTGTCTGCTGA-------TGTCATGGAA-GTCAGCTTCCTGCTAG---GCACAGCCCCAAGAGAAGCCAGCTCAGAAATGCAGAGTCCTGAA------GGGGCTGTCCACAGCCAAAGCGTTAAATGGCCATCCTTCACT
s HiC_scaffold_1 130555662 1024 + 233722169 AGGACAGCGGCCAACAGTGATCTTTTAGTGCCCTGGAGTCCTGACCTGacactctctttttaaaaaaaaactatcaggGGCCTCTTGGG--GCCCCACAGCTGAGCTATGTTCCATGGAAAGAGCTTTCAAACCATAGGAGTAAAACCGTTTTTCTGAG-ACACTTTTCTCCCTCAGGAGACTCAAGTGAAGTGGgaagcttgcattttattttcGCTTTGGGTAgaggggggtgaggaagaggcTCCCTTTTCTGGAAGGAGAAATCTCGGGCGCAGAAGGAGTCCCTCGTGTTGGCAGCG---------CCATCCCTTCTTTCTGAGCTCCC-------------CTCACAGTAGGT-TTAATTAGATGTCACCAAATTCAGTGAGGA--GGTGC--ACAGCTGACTCCATCTCCGCAGGGCCAG-----GGTTACAAACTTGGGTGCCAG-----GGCAGCTACTCACCCCACCCT-CCCTTCAGACCATCTCCATGTCCTTCCATTTCCGGTTCTGCACAACCTCAGGCCAAAGCCAGGCGAGGATGGAGGAGGCACCTCTGCATGACTCCCTCTTCTGACCCTCAAGCCACAGGCTCCATTTTCTGTCTTCCCTC-GGGCTGTGATTCATGGTAGATATTAGAAAGGAAATACCATCCTTCAATTCTGTCTACCATTTC-CTTATCTTTACAGGGTTCTTATTAATCAGTATCCTCAAACTTATATATGTGATATCACACTAGGAAGCAGAGTTGTCAATGGGCCCTCTTTCCAGGAGCACTGAACTCAATATAAATAAGAGCCAAATAAACGCCACCTTGTCGCCACGAGGAATCTGCTTCTCTAGTCCAGAAAGGGAGCCCTGAAAGATAGCCAGGTAACAGCAGT----GTCTGCAGATGGGG----TCTGC-----------AGTGGAAggctcctttttcctctccttctctgaAGAACTGGGTCAAGGGATGTCAGCTTTTTGCCAGTGAAAAAAGCTCCATG-------CACTCGGAGAAGTGGGGATCCAAAATGGTGGGGGCTGCCCATGACAGCAGAGCCAAGTTATTATTCTTCATT

a score=50043
s chr3           144404971 1443 + 160039680 CCAGCATCTCTTGTTTGAAGTTCAGGCTGCCAACTCCCTCAACCCCCTCAGTGTTCAAACAAACAAACAAAAAGACTCCCTTATTGGGAGAATGCGG---ACCCATCT-CCCTACACATCCCTGTATGTTCTGTTGCTCCCCCCAGCCC---CCAAGCAAGG--------CCTGAAGGGTC-------CTTTCTTCAAGAAG---GGAATGGCGAAGGGTGTAGGAG----------CTGTATCCCCACATCTGTCCATGCACTTGCTTCCTAGCAACCGATGAAGCCATATCGGATGGCCCTGTGGAATCAATCACTTGACTG------GAGAGCTGTACCTGAACCCACTTGGCCTGCAGCTCACCTTCCAATTCACCAAGGTGATTTTCTTTTCTCCTGCTTACTCTCCCCTGCCCATTCACAGCTTCACTCAAA------AAGCTCAAGGGTCTCTACAAGGCTAACACTCCGTGGAACCCACGCACCAACCCCAACCCGAGTGTCTCCATAGACCGAAGTCTGTCACACAGGCCAGGAAGAGAGCAGCTGCGGCTAAGGAGGTCCTGTTTCTTCCAGGCCTCTTTCCAGC-TCCGTTCTGGCCG-GGCACGTGGGCTCATTTACATGGCTGGTTTGGAGCCTCTTGGCGGATGAAAGTGCTGGAGTAGCTTC-TATGTGTTGCTCATCATTAAACC-TCCCTTCAGGCTTTCTCGCCGCCTTTGGTTTGTGTCTCAATCTGGAGCAAATTTAAGCAAAGGTTTGGGCCTCTGCATTTCCTTGGtttaattaataattcataataaaaatttaatCAAGGCATAAGCATTTGTGAAAGGTTATAAAACACTCTTATTTGCCCTGGAGATCAGAATGACCACTTTTAAAATCTGTGAAATGATG---------GGTTTTTTTTTTCCCCCAAATGAGGAAATTTTACTCTCGACTGTAAATCTCAGCTGTTTGCCATATGTAACCACAGAGAATCTGTTTATTGACTTAGTATATTAGAAGTAGTTAGGCAGGAAGAAAAATAAACCCAGACTCCAGATGGGAGAAAGTGT----ACGGAGTGAAGAGCCGGAGTCAGAGTTGCAGAAAACAAGAACCTCAGAGAATAGCAAGAAACAGTAGATGAGA-AGCCCAGCTCTCAAAGAAGAGGTAGGCGATAGGGACCAGGGATTTAGGAGACCCAGAAGGTGGGGGGGGGGGGGGAGGCAGGGTAATCAGTCCCAATCTTTGCAGAGGGAAGAATGTGGCAGTAAATGGCGATCAGACTTCGGGAGGGTTCCGTAGTTGGGTGGA------GTCCTGGGTGAC---GTCTGTAAACACAGATGCGTTGACACCTCCCTGGAACACCAGAAAGACCTTCTTGC--TATGGCAGAGAGATGTCTAGACCACGGCTCACCCAAACACCCA-CTATGAACAATGCCAAACCGCTAGGAAAGCTACCCAAAATAGACTCT--AGCCTCCACTTGAAACGCC-TGTGAagcccggtc
s HiC_scaffold_1 130557531 1406 + 233722169 CCACCATCTCTTGGTTGAATTTCAGGCTGCCACCTGCCCAAACAACCCCAGTGTCCTACGAAA--------AGGACACCTTTTCTGGAAGGATGCAGCTAACCCACTTACCCCAAGCAAGGCTACATG-------GCTCCCTC--GCTCAGGTCAGGCAAGGATGCTTCTTCCGCAGAGCCAGGTAGCCCTACAGCAAGGAGCAAGGCTTGGCAAGGAGGAAAGCAAGAAAGGACATCTGGGTCCCTAACCCT---------CCTGTCTCCAGGCAAACTGTGCAACTGGGTTGGGAGACCTTGGG----TGAGGGCTTCACTGAGTCCTGAGAGCAATGGCCG--CTCCTCTGCCCTATGCCTCAGCTTCCAGGACACC---------------TCAGCTGCCCAGTGTGTCCC-CTTACCTACAGCCACTCACAAAGGATGCAAGCTTGAGCATCTCCGGAGACTCAGTGCTCCATGAAATGCAAACACAGAGCCCAGC--------------------------------------------AGAGAAGCCTCGG------AGGTCCTGTTTCTTCCAGGCCTGTTGCCAGCCTCCATTCTGGCTGAGGCACGTGGGCTCGTTTACATGGCTGGTTTGGAGCCT-TTGGCAGATGAAAGTGCTCAGATAGTTTTATATGCGTTGCTCATCATTAAACTGCCCCTTCAGGGTTTCTTGCCGCCTTTGGTTTGTGTCTCAATCTGGAGCAAATTCAAGCAAAGTTTTAGGCCTCTGCATTTCCTTGGTTTAATTaataattcataataaaaatttaatcaagGCATAAGCTCTTGTAGAAGGTTATAAAACACTTTTATTTGCCCTGGAGATCAGAATGACCACTTTTTAAATCTGTgaaatgatgttttgttttgttttgttttttttcccaaatgaGGACATTTTACTCTCAATTGTAAATTTCAGCTGTTTGCCATATGTAACCACAGAGAATCTGTTTATTGACTTAGTATATTAGAAGTAGTTaggcaggaagaaaaataaacccGAACCCCAGACGGGAGAAAGTGTAGGGAAGGAATGGAGAGCTGAAGTTAGAGTCTAGCAAAACTCT-GCCTTTGAGAATAGCGAGAAAC---AGATGACACAGCTCACATCCCAGAGGAGGGGACAG-GGTGGCAACC---GGCCTGGGAAG--CAGCAGGGGTGGCCGGGTGGTGATCACAGACACTCAA----AATCTTTGCAGAAGAAACCATGGAGCCGCAGATGGCCATTGAGCACTGAGAGGA-CCCACCGTGGGATAAGGGGTCCGTCCTGCTTGTCCCAATCTAAAGGCA-GGATGAGTTGTCACCTGCA-GGAACTGCAGGAAGGAGTTCTTGCCTCACAGCAGAGAGG-GTCTACACCAGAGCTCACTGCAATACTCATCTCTGAGCAAAGCCAAATCACTGGGACATCTGCCcaagacagattcctagatctGCACTATAAATGCCATACAAAGCTCTGTC

a score=45494
s chr3           144410862 1424 + 160039680 GTAAAATTAACATCCGAGATGAACCTACACAT-CAAGAAGTCAA--TGTCAAATCACTCCAT---------TCTTTGTCTCAA---------TTACATCCAAGGTTGACTTGTGC-TTGCCCTAACCCCAACTAAGTACTTTC--------------------CCCTCCAGGGTGCACGCCCAAGATGCAGTGTGTCCGTCCCCAGTCC-AGT--TCTGTTTTCAGAGCTACA-GGCACCTTCTGAATGTAAGC---AGTCTAACTACCCACTTCCACTGGGGGGGGG-GGCACTGAGTCA-CTCCTCCCATGCTACCCAATCCTTCCAGCACCGGGCAGGACGGCTCTAAATGGTTGTGGTTTAGTAATTTGGGGGCTCATTTGCAAGGCAAATGCAAACTACCTAAAATTAGGGCTCAGTGGTGTAGAGCACTCACTGAAGGCTGCTTTTGTTTTGTTTGAAAACCACAGTCTTGCTTGACAAGATGTTATCACCAATCTGGCAGGAGAATCGGAGAATTGGATCTCTTTGTTCACTGTAGAAAATCTATTCCATTCTTC-----------TGAGTGACAGGATCCTATGGGAAGAGACAATGGAGGCA-GGTCGCTGGCCAGTTGCAGCGGAGAACAGGGC---TGAGAGGGAAAGGGTTGGAAAAGAAAGCTA-CCCCCTGGGAG------------CTGGTGTCAACAATGGTGCAGCTCCCAGCAGGGATGCCTAGGGCTCCAATTCCTCTTAGAGAAGTATGCAGTAGTGTTTGGTCAACTTCAAA------CACAGCTTCTTTAGATCTTTATTTCAGATTCAACCTGAGTCTATTCCAA-CTTGGGGGGGGGGCATAGACGGGAGGGCCAGTAGGGTggttcaatttagtttattcttggcaaaacagatcttcctgagcctcagaggtgggggtgggggggaagcagcttagacagatgtaaacagactctaaggccctttggacatcaaataacactagcaaagcaacgtttagatgagttaagtgtaaatcaatcagaaacatatggactacatttccctgaaaatacacagaggtttacaaattgcaggcacagggtggggtggtggtgggttggcaagacacaagactca---tttgccaaacctag--tgtttggagaagacttaaagaaagcagactgacccagagtgccttcaagtctgcc-atccctGATGCTGGTCACATCCCACAGGACCACAAATATTTAAGGGCATGGGTTTTAAGAGATTTGCATGTTGGATAAACTT-AACTGCTCGGAACATGCAGTGATTCCTTACCAGATAAATGTTCACGGAAAGGTGAAACTGTCAAG-TACCGTGCT--ACAAAAGGTGAGGGCATCTGCCT---GAGTCGGACTGAGCGGGC------------TTAAACAGAGTGGGACACACTGGGACACGCTGAGGTTCCATGCCTGCAGTTGTGGGTTCACCGAGGGTAGACCCTACTTTTCCCAGTATGGAtctccctc
s HiC_scaffold_1 130561805 1451 + 233722169 GTTATATTCATCTCAGAGATGCAACTCTGCATGTCAGAAGTCAACTTGTCACATTATTCTGCATTGACCCATCTTTGTCTCAAAAATCTCCATTCCAACTAAGGTTTGCTTAAATATTACCAAAGGCCCATTAAAGGACTTTCTCAGAAGCAGAATGCCATTTCCCCCCATGATGAATCACAAGGTTGCAGTGAGCTTGTCCTTATTCTTAGTCATCATTTTCCAAATGTGTGCAGCATCATCTAAATTCAAGCCACACCCTA--TACTCACTACCTCTGTAGCAGAGCAGCACCAGGCCAGCAGCCTCTGTGCT-------CCTGGCAAGTGACGGCAAGATGGCTTCACAGACTTGTGACTT-GTAACAGAGGAACTCATTTATGAGGTAAATGCAGACTCCTTGACAGTGAAGTTCAGTGGTGTGGGGCACTAGCTCAGGGTT-CCTTCATTCTGTTTCAAAGCC--------GATTCATAAG--GTTGTTGCAGACCTAGCAAGAAGGCCAG-----------CTTTTGTTCACT--AGAAAATCTGCTCTGCTCTTCCCAGAGAAATGTGGATGACAGAAA-----GGGAAGGGACCATGCAGATAAGGTGGTTGACCAGTTGTGGCTTAAAATCAGGCCAATGAGAAGGGCCAGGTTGGAAA-----GCTGGCTTTCTGGGGGGTTGGTCCTGGACTGGTGTCACTG--GGGACAGTGCCATGC--GAAGGCCTTGGGCTTCAGTTCCTTCTGGTGAAGTGTGGAGTA-CGTTTGGTCAACTTCAAAGCCCAATGCAACTTCCTCAGATCTTTATTTCAGATCCAACTGAAGTCTGATCCAAACTTGGGTGTGGGGGCTGGAGAGACCGGGTAGCA------TTCAACTTAGTTTACTGTTGACAAAACAGATCTTGCTGAGTCTC--------GGgggagaaaaaagcagggtagacAGATGTAAACAGGCTCTGAGGCC-TTTGGACATCAAATAACACTAGCAAAACAACGGTTAGATGAGTTAAGTGTAAATCAATCAGAAACATATGGACTACATTTCCCTGAAAATACACAGGGGTTTACAAATTACAGGCACGGGG-------------GTTTGGCAAAATGCAA--TTCAGGTTTTGCCAAACCTAAAATGTTTGGAGAAGATTTAAAGAAAGTAGACTGACCCAAAATGCCTTCAACTCTGCCCATCCCTGACACTGATAATATCCCACAGAACCACAAATATTTAAGTGTATGGGTTTTAGGAGATTTATATGTTGAATAAACTTAAACTACTCGCAGCAAGCTGAGAGCCTTTTCCAGAAGAGTGATCAGAGAAAACGGAAACTGCCAAGAGACCGTGCttagaaaagggagaaaatatcTACCTTTCAAATTGGACTGAGGAGACGTACCAGTGTATGTAAAC---GTGCAGCAGAATGGGATGCTCTAAGGGTTAGCGC--AGCGTTCTCAGCTCACAGGGCACCGGCTCCACTCTGCCTGGCCTGCATCTATTTC

a score=40643
s chr3           144421013 1478 + 160039680 tcttcaagactcctgtggtgatactgtgtgagacaggcccatctggataatctaagttacaatcaccatattttagggtcagatgctcagtaaatttaatcccatccattgtcttcatctgtcctca----gcaatatcagagtatttgcagatcttagagattaggTATTGAGTGTACATTTTGGGGATGCGGTTATTCTGACCAGCACATTCCCTGCAACGCAGCCAGGCAAGCACTGCTTcacacacaaacacacacacacacacacacacacacacacacacacacacGTGCGCGCATATACATCCTCAATGCGCTCCTAGACCCAAAAGTGGGCCAAGGGGCTTACTCATTTCTCTTGCCTTCTGTAGCTGTTGGATTTTTGTCTCTCTTCTCTATATAAGGCCTTATACAGACATCAGAGATCCCCTACCCACTGATTTT-AATCTTCCATTAACTTGGAAATCACTTTATTTACCCTCATTTTGGAGCAGCATATAGTGCGTTTGGAAGCAACCTTGAGCCAGGT-ATTTGTTTCCGCAGGCAACAGCTGACAGCGTAGCTCCCCTAGCCTGTCCACCACTCATCCCTATAGCTGTGCTCAGGAccccccacctccagtccccatacccactcctcctctccccactgcccactcctcccctcccccctgcccactcctcccctccctcatcccccaccccGTCCACGCCTTCTGGCTCAGCAGCAGCTGTAGCTTTCAGAGAGGCTTCCTAGCACAGGAAGTGTTAACTGCACAACTGA-GATGATGAGAATAAT----TATTTTGTATTTTTTAAATCCCACAGTTATCGATCTTTATTATAGAAAACATATGTGC---TCCTTCTGTAATAGAC-TGTTCCTGACTGGGTATATGTAAATCAAAATCTTTGTAAATTGAGTCATATTTTAAATGCACCAGGGGAGCTGGCTATTTAAAGGGATCCTGCTGTGAATCTTTTTGTCAAGCCAAGAGGCAGCTTGTGATGCTAATTTTCA-CCCTTAATTTGCCTGTTTGGTAGGTTCAGATTTTCATAAAGT-CCCCAAATTCACGAGTCAAGGCAAAGCACACCTGGATGCTGGATTTCAAGGGTAGCTTTCTCAGGGGAGCTTAAAAAGCTGTCAGGTGTATTGTCTCATTTATCTCCCC----------CAAAGCATT--GGGGCAGTCACTATTGTCCTCAAAGGAGGTGTAGCTGTCTCCCA-------GCCCACCTCGCAGGAGG-GTCCCCGAGAGAAGGAGGGAGCTCAACGGAGAGCTATTTATTTTCCAATTAGCAATAGGTTCTGTCCCAGGAG-CTCTCTTCAAAGCCTAGACTGTTCTTTTTTTTGTTTGCTTTTAA--ATTACTGTCCAGATGGAGAAACTGAGGAACCAAGACATTCAGTGCTTCCACGCATCACGTGACTGGGGAGTGGGCACCTATA--CACAGAGATGA--CGTTGAGGTTCAATGAGGAACTTGTCAATATGGCC
s HiC_scaffold_1 130582282 1302 + 233722169 TTCTAAGGACTCCTATAACTACACTACATTAT-CAGGTCTACCTGGATAACACAGGGTAAAATCTTC---TTTT-------GCTGTTTAGCAAATTGAATTTCATCTACAGCCTGGATTTGCCCTTGCCAGGTAACA-CAGCATATTCACAGGTTCTGGAGATTAGG----AAATGTTCATCTTTGAGAGGTGGTTATTTGGATCATGGTACTCCCCATAA----ACTTGGCA-GCATAGGGTGGTATGCATgcttgcacacatgcacacaca-----------------------gcg---ATATACTCCCAAGGGGA----AAACTGAACAGTGAGTGAA----CTCACTTATTTCTAGTGGCTTTTCCATCTACT--ATGTATG-ATCTTTTTCCTATATAAGGCTCTTT-CAGACATCGGAGATGCACGCTTTGttgatttttaatctttca---aaccAGAAAT-GCTTTA-----ACTCAATTAGGAAAAGCACAT--TATGTTCAGCCGTGATCCCAagtctgtttatttgttt---------------------------------------------------------attttaatcagG-------------------TATGA--------------------GTCCGATCACCCTGTTCTGCCTGAACATTTCT--------------------------------------------AAAAATGT-GCTCGCAGG------TCCCAGCACTGAAAGCGTTAACTGCAGAAttaaagatgatgaaaagaaagaaatattttatattttaaaaatcccacaGTTATTGatctttattataaaaaatgtaagtgCCTCTCCTTCAGTGGTAGACATGTTCCTAACTGAGTATATGTAAATCAAGTTCTTTGTAAATTGAGTCATATTTTAAATGCACCAGGGGAGCTGGCTATTTAAAGGCATCCTGCTGTGAATCTTTTTCTTAAGCCAACAGGCTGTTTCTGATGCTAATTTTCACCCCTTAATTTGTCTGTTTTGTAGGTTCAGGTTTTCATAAAATCCCCCAAATTCAGGAGTCAAAGCAAAGCACACCTGTATCCTATATTTGAAGGGTATCTTTTTCATAAGCACTCAAAGAGCTGTCAGGTCTATTGTCTAATTTATCTTCCCAACGTTCTTGCAAAGGAGTTAGGGGCGATCATTATAATCCTCAAAGGAGGTGTAACAGTCTCCCAACCTGTGACCTGCATTGCAGAAGGCTTCCCTTAAAGAGGAATCCTGCTTAATGAAGAGCTATTTATTTTCCGGTTAACAATAGGCTCTGTTCTGGGAGTTTTTCGTTAAAGCTCAggatgttctttttttcccctactcTTTATTACTAGTAtccagatggagaaactgaggaactGTGAAATTAAATGCTTACA---GTGTTGTAAATGTTGAAGGAATGCCCACAGTAACCACGATGAAGTGTTGGAGTAGGATGGGGAACACATGAAGATGGCC

a score=30916
s chr3           144424946 1449 + 160039680 TTGAACTCAGCTTCCC--GGATGCAGCCATTA-GCTCATCCAGATGCAGCACTGAAGATGCTCAGCTGCAACATCACACAAAGAAGATGCTAGAAGCTGCGAGACAGCATGAAGCAATAAGCAAAGCTCTGGTCTCCTTTTACCCACCCCCACGCACCACCCAGGTTTATACATTTTTAAAGATCCAGCCTTAAAAGCAAGTAGGCCAAGCCGTTGAAAAGACTAGACTTGGAACGAGGTGTCTATTTTCCTTCAGTTTCTAATTTTGGGGCCTGCAACATCATTCCTGCATTTGTTAAAGACCTTGGGGCTCCTGGAAGAAGAGAAATTTAAGTATAAAAGCCACTATAATAGTACTGCTATTAGCAGAAGTAGGGTTTGGCAGGAAGCCTTGGCCACCCAGACTCCAGAGGGCTAAGTGACTAAATGGGAGGCTCTGTGTGACTCAGAGGGACCCAATCTGTCAGCCAGAAAGAAGCTGGGAAACTGCC------------------------------------------------------CTAAACTCAT---------------------------AAAGATTTCTGGGGC----AGCATCCTTCCTACCCACTGGCCCCTGCGCCACCCTTCCCTGTTCTAGGATGCTTGGACTCCCCAAAGGCAAATGTGCCTGATTCC-----------------TATACACTGTTACAGTCTTCTCTTCCTGCCTTCTTTGTAGAGCTTAGGTGGTGAGAGTCTCTCAGGACTTCTCTTTT--GAAAGACTGTGGGCATATGATGAGAGACCGAAACTGAGCGGTAAGCCTCAGAGGAGAGTGGAGAGGTAGATACCAAGG----AGATTCCCAGGGCCACAAGCA--CTCTGATGGGTACCCACATTGAAGCTGGGCCCAGTCTACTTCATACAATTCCCAGGTTCACAGCATCTCTAAGC-TCTAAGAGCAGCCTGGACATCCTCCTGCCGTCATGACTGCTGTGCAAAAGGTAAGTTCTGAATGTAGAGACCATGATAAAACTGAATGGAGAGAATTCATAA--------ACTGATCCTGGGAATGAAGGGCTTGGACCTGCCCCCTTCACCCTGAGGTAGCCAAGGGCACAG--------AGCCATGTTCCAGCCCTGAATCTCAG------------TATCAGATGGCAACAAGAATAATGCTATCATATACTCACTGGAGAATGATGCGTGATGTTAGGAAGAGACCAGAAGGGCAATAAGGAAACACAAAGGGCCCCCACATTCTC--CTCCCAGTTTCTTTCTGTTGAAGGACACCTCTGAGGTACAGCCCCAGCTGGAAGCCATACA----AGTGCCACAGCACCAGGCCCCATATCTGTTACCAAGCCCTACCA----------------------AAGACACATGGG-----AAGACTTTCAAAGCCAACTGTCCCCTCTGCTTCTCACAGCTCCCACAGCCTGC------ATGGC--------------------------------------------TCTACCTGTTTCTAGCCATGTGTCTGAGAAAGTGTCCTGGT----------TTCCCTTACCTGCCAAATGCAGCAGATGGCTCTATCTTTCTCAGAAGAT--AGAGACTGAAGCAAGATGCTAAAGACATAGCGC
s HiC_scaffold_1 130585203 1575 + 233722169 TTGACCTCTTCTTCTCAGGGACCTGTTTATTACACTCACCCAGCTGCAATTCAAAGGCTTTTGAGctgcaaaacca---gagaaagatac---------CGTGAT-GCCTCAAGCAGGAAGAAGGCCCTAGATGTTTTTTTGTCTACCCATCTAC-CCACCCAAATTTATAAATCTTTAAAGATCGAGCCTTCAAAGCAACAATGCCAGGCCA--GGAAGCAGTATAATTGGAATATAGTGTATATTTCCCTTCGGTTTCTAAGTTTTGG-CCTGCAGCATAATTCTTGCATTTGTTAAAGACCTTGGGGCTcctggaagaaaggaaatttaagtATAAAAGCCATTATAATAGTACTGCTATTAGCACTAGT-GCGTTtggcaggaggcctgggccaCCGGGAATCCAGAGGCCTAAGTGACTAAATGGGAGGCTCTGTGTGATTCAGACAGATCAGATCTGTGAGCCAGGGAGGTGCTGGGAAATCTCTAAACACAAAGGGCATGTCAGGGGGAGGGGCAGAAAAGAGTCAGTTGAGGCACAACTAGATTCATGGGAGCTCAGAACAGGTGCAGTTAGGAACAGATTTCTGGGGTTCGAGGCCCTCTTCCTACCCTTCAGCCACCATGtcccctcttcctgtcccaggaTGCCTGGACTCACCCAAGGCAG--GAATTTTATTCCTTTCCCTTCTGGCCTTGTttacactgctgaattctattCAGCCTTGCTATCCTGGAAAGGTTA--------------CACCGG-CTCCTCTTACAGAAAGGCCCTTGAGCATGTGGAGGGACACCACATGTGAGCAGC-AGCCACTGAGAAGAGTGAGGGGATACATGAGAGGGGTACAGGGATACTGGGCAACAAGCATGCTTTGCTGAGTCTCCTCTTTCAA-CTGGACTGAGTCTGGTGCATGAAGCACCCAGCTGCTCAACATCTCCCAGCTTCCAGGAGGGGCCCCAGAAGCTTCCTGCTGTGGTGGGAGCTGTG-GGAAGGTAAAGTTTGCACGAAGAGACC----CAAAGC--ACCAAGGAGAATGCACCAGACACTCTGCTGATGGCCAGAAAGAAGGCATTGGACAGGGCTTGCACTCACAAAGGCGCACTGGAAAGCAGGCAAATCCAGTGATTTCCCAA-CATGGATCTGGGCCTGCGGTTACTCGTTAGACAGCAATAG-------ACTATCATTTAT-------------------------------------------CAATAGTTAA----------CTCTTGTCTTCTCAACTCTCAAGCCTTTTTTGTTGGAAGCTGCCT-GGAGTTGTAGCCACAGCTGTCGCCCACATGGATTACTGTCACAGCCCCAGGTTCTACTTCTGCTGCCAAGCCCTGTGGGGCCCTGTGAAAGCAGCTTAACAAGACAAACAAGAATGCAAGACTTTCACAACC-----CCTACTCCGCCGGTCACAGATGCTGGAGCCTGTAGCACAATGGCTAGGAATGGATAATTTGCTGTCTGACCTGCATCTGAATTCTGCATCTACCACTTTCTAGCTGAGTGACAAAGTATGTGGACCTCTGTGAAccccatttcctcatctgtaaaatggggctaatAGTTATGCCTTCCTGTGAGGGTCAGTAGAATGAAATGAGACACCAAAGGCATAGCAC

a score=4270
s chr3           144427179 68 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTTGTCCTCACAAAGT
s HiC_scaffold_1  77422670 68 + 233722169 ttaTGCCATGAGCTCATAGGGAACAGGCTCCAACAACTTAGGCTCCTTCCCTTTGGTGCTCACAAAGT

a score=17024
s chr3           144427179 513 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTTGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGAGCAGGCTGGAGCTTCAGCTGCACCCAGGTGCCCTTTTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTGCGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGCCCACGGCATGCTGGGTGACATTGTAGA--CTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCCTGGTGTCTACAGTATCACCCTTCTTGTAGATTCACATGTATGTGGCCAAAGGAACAACGCCATG-TTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCTTTTGTGTTCGTCATTTTGGCGAGTTACTGGAAGA
s HiC_scaffold_1  32421026 435 + 233722169 TTATTCCTTGAATTCATAGGGAGT------------CTCCAGCTCCTTCCCATTGGTTCTTCCAAGATGTATTTCTCTGGGC--TGCAGGctggcat------------------------------------------ttctttctttttgtcatcttttttctTGATGCATTTCAGGAAGTGATCTGCGCTCTGAGAGTGCTTAATATGCTCAGTGTGCACATGAATGCTCTTGGCAAGA-TCTTGTTCTTAACTTGCTTGCTTATAGCAATGTCAACAGCATGCTGGGTGACGCTGTAAATGCTCTTCCAATCTGACCATGGGA---CATCTCTGGCATTC--TTATGGACAGTACCCACTCCCTTG---TCTACAATCCCATCCTTTTTGTAGATTCACATATACGTGGCCAAAGGAACAACcccatgtttttttaaaaggcctAAAGTACACCT--CAggt--------tttttcccttt------ctcatttcTGCAAATTAGTAGAAGA

a score=29550
s chr3           144427179 517 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTTG-TCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGAGCAGGCTGGAGCTTCAGCTGCACCCAGGTGCCCTTTTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTGCGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTT-GCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCCTGGTGTCTACAGTATCACCCTTCTTGTAGATTCACATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCTTTTGTGTTCGTCATTTTGGCGAGTTACTGGAAGATGGC
s HiC_scaffold_1  80725745 506 + 233722169 TTATGCCGTGAGCTCATAGGGAACAGGTTCCAACAACTCAGGCTACCTTCCCTTTGGTGTTCACAAAGTGTGCTTCTATGGGAGG----------GGCAGGCTGGCGCTTTAGTTGAACCCAGGTActtttctctttggcttccttctttttccGATCATTTTCCTTGACATGTTTCAGGAAGCTATCATGACTCTTTGAATGTTTAATGTGCCCAATACGTATATTAATCCTCTTGGCAAGAATCTTGCCCTTAAGTTTCTTGTTTACAACAATATCAACAGCATAT--AGTAACATTGTAGACTCTTCTTGTTTTTGCCATGGTAATATTTGTGTGGCATTCCTTTTTGCACAGTACCCATTCTTTTGTTGTCTAAAATATCACGCTTTTTGTAGATTCACATGTATGTAGCCAA-GAAACAATCCTATGTTTTCTAAAAGGCCTAGAGAACATATATCAGGTTCCCCTCCTCTGTCCCTTCATGTTCATCATTTTGGCAAATTATTGGAAGATGGC

a score=30103
s chr3           144427179 527 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTTGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGAGCAGGCTGGAGCTTCAGCTGCACCCAGGTGCCCTTTTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTGCGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCG----GTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCCTGGTGTCTACAGTATCACCCTTCTTGTAGATTCACATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCTTTTGTGTTCGTCATTTTGGCGAGTTACTGGAAGATGGCTGCAGCGGCC
s HiC_scaffold_1 178274457 521 + 233722169 TTACGCCATGAATTCATAGAGAATAGGTTTCAGCAACTCAAGCTCCTTCCCATTGGTTCTCACAAAGTGTGCTTCTCTGGGTAG----------GGTAGACTGGTGCTTTAGTTGAACCCAGGAGcctttctctttggcttctttctttttctgaccaTTTTCCTTGGGACATTTCAGGAATCTGTTGTGACTTTTTGAGTGTTTAATATGCTCAATATGCACATTAATCTTCTTGGCAAGTATCTTGCCCTTAACTTGCTTGTTTACAACAATGCCAACAGCATGCTGGGTCACACTGTAGACTCTTTCATGATGTTTTGCCATGATAACATTTGTGTGGCATTCCTTTTTGTACAGTATCAATTCCCTTGAGGTCTACAATATTACCCattttgtatatttgtatgtatgtggCCAATGGAGCAACCCCATGTTTTCTGAAAGACATAGGGAATATATATTGGGATCCCCACCTCTTTACCTTTGTGTTCATCATTTTGGCAAATTACTGGAAGATGATGGTTCTGGcc

a score=29675
s chr3           144427180 516 + 160039680 TAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTTGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGAGCAGGCTGGAGCTTCAGCTGCACCCAGGTGCCCTTTTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTGCGAGTGCTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCCTGGTGTCTACAGTATCACC-CTTCTTGTAGATTCACATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCTTTTGTGTTCGTCATTTTGGCGAGTTACTGGAAGATGGC
s HiC_scaffold_1  16174762 497 + 233722169 taTGCAGTGAATGCATAGGGAATGGGTACCAGCAACTCAGGCTCCTTTCCACTGG--------AAGTGTGCTTccctgggcag----------ggctggctggCACTTCAGTTGAACCCAGGTaactttctctttgtcttttttacttttctgatcattttccttgATACATTTCAGGAAGCTATCACAACTCTG--AGTGTTTAATATGCTCAGTATGCACATTAATCCTCTTGACAAGCATCTTGCCCttaacttgcttgtttacagCAATGCCAACAGCATGCTGGGTAACACTGTAGACTCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCATTCCTTTTTGCACATTACCCTTTCCCTTGATGTCTATGATATCACTGTTTTTTGTAGATTCTCATGTGTTTGGCCAAAGGAACAACCCCATGTTTTCTAAAAAGCCTAAAGAACATATACTGGGTTCCCCTCCCCGTTCCCTTCATGTTCATCATTTTGGCAAATTACTGGAAGATGAC

a score=13429
s chr3           144427381 315 + 160039680 CTTGATGTGCTCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGCTTGTTGACAGTGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCCTGGTGTCTACAGTATCACCCTTCTTGTAGATTCACATGTATGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTCTTTCCTTTTGTGTTCGTCATTTTGGCGAGTTACTGGAAGATGGC
s HiC_scaffold_1  99840708 306 + 233722169 CTTACTATACTTAATATACACATTAATTCTCTTATCAAGAATTTTCCCTTTATCTTGGTTGTTAATAACAATGCAAAAAATATACTGTGTAATACCATAGGAACCTCCACTTTTGTCATGATTTCCTTTGTATGGCATTCCTTTGTTAACAGTATCCACTGCCCTGACGTCTGCAATATAACTCTTTATATGGGTTCACATGTATGTGGCCA-------AACTCAATGTTTTCTAAAAGGCCTAGAGAACATACATTGGGATCCTCTCATTTTTCCCTTTACACTGATCAATTCAGCAAATTAC--AAAGATGAC

a score=41712
s chr3           144428233 985 + 160039680 AAAGTACCCTGTGAGGTCCTAA--AGTTCTAGGCCAGCATACTGGAGTAAAGAGGAGTATAATAACTGTTAAGAGGCAATGGAGCGGAGTCTGTACTGCAGCGCTCAGCACATAGTAGGGTTATTTTAAAAAACAAAAACACAAAACCCACCAATAATGAAAAATAGCCATTTGCTTTAGGTTGGAGACACCAGCCTTTGTCACACATTACATCAAGAAATGGAAATTAAGTTATAACATATGAAGCTCGTATTGCAATCGTGGGTGGCAGGGACCTCCTTCTTGGCTTCCCATCTAATTCATTATTCAAATCCTTTTACCACGGTCTGCTCCACAGCTCAATGTGGAACCAGCTGTGGATCTTGATAAGAGGAGAAAGCTGGGCT--GTTTCCACTTTGCTCCTGGCAGTCCTCAGGCCTCCAACAGAACTTTCTTACAAAATGAATAGTGCTGGCTCCCAGAGAGACCAATCTAATCTCATCTTGTCCACTCAGAAGATCCATATCAAACGCTACAGACTGTCTGACGGCATGGCTGCAGCAG---AGGGCATCTAACTCCATCTGGGTCTGCAT--CCGTCTCAGTGCCCATGCATGGAGCCATCAGGGCGGTGGAA--------GCAGAATATAACTGGCTGGCATTTAA---ACTGCTCCCATCTATGGTGTTCTTTGAAGAGCCCCGCCAGGAAATACA-ACAGAAACAGAATGAGCATCAGAGTTTAATATCCACAGCCTCCTCTAAACAGGC-CCTGGGTGGATCCAAAAACCAAGTAT-TACTGTTTATAGGTTCCATAATCTGATCAGATTACCACAGTC-TGTCTAGAGACCTAATTTACTAATCCTCTGGAGAATTTTAAATTAATTTAAAAGGA-GGAGAAATAAGTCTCTGGTTACACTTGTTGGAATAACATGTGACTTATTCCCTCTCTGCCAGTTTCTG-AAGGTTTGGCCTACTTCAAACGAAATTACAGGAGAGGCTGGTTATCCAGAAGGA
s HiC_scaffold_1 130593276 983 + 233722169 AAGGTGCCCTGTAATGTTCTAATCAATTGGAAACAGTTAAAT-------ATGAGGATTACTGTAA--GGTTAGAGCTCAGAGTGTAGAGTCTGTTATGCAGTGTCTAGCATATATCAGGG--AGCCCaataaacaggaaaa--gaacaCATCACTAACTGAAAATAGCCACTCATTGCATGCCAAATATTTCAATCTTTGTCATACACTGAAACAAAAAATGGTAATAAAGTTGTAACACACAAAATTTATATTCCAGTCGTGGGTGGCAGAGACCGCCTTCTTGGCTTTTGATCTTATTCATTATTCAAATCCTTT-ACCAGAGT----------GCTTAATGTGGAACCAACCGTGGCTCTTGATAAGAGAAG---GCTGGGCTCTGTTTCCACGTTGCCCTTGGCAGTCCTCAGGCCTCCAGAATAACTTTCTTACAAAATGAATAGTGCTGGCTCTCAGTGCGACCAATCTAATCTCATCTTGTCCACTCAGAAGATCCATATCAAACGCTATAGATGGTCTGACTGTGAGACCACAGCAGGAAGAAGCATCTAATTCCATCTGGGTTTGGATCACTGTTTAAATGATCAAGTAGGGAGCCATTACTATGGTAGAAGTCGAGATGCAAAATATAACTGgccaaattttaaaacactgttcTTGTCTAAGGTGTT-TTTAAAGAGCCCCCATATtaaacaaagacagaaacagagtgaGAGAAGGGAGTTTACTTCTACTGCTCCCTTTAAACATGCACATGAATGAATCAACATCCTGATTGTCCACTATTTATGGGCACAACAGTCTGATCAGATTACCATGCTTATGCCAAGAGACCTAATTTACTAATCCTCTGGggaattttaaattatctttaaaggATGGGGGAATAAGTCTCTGGTTACTCTTGTttgaataaaatatcattttttcctGGTCAGCCATTTTCAGAAAGGCTCTACCCACTTAAAATGGAATTACTGGTGAGGTCAGTTCACAGAAAAGA

a score=133746
s chr3           144429968 5042 + 160039680 [encoded data, 5564 characters]
s HiC_scaffold_1 130599101 5233 + 233722169 [encoded data, 5564 characters]

a score=31674
s chr3           144435457 2269 + 160039680 ATACCTGTACGGTAGAGGTCGGTAGCGCCCCGGAAGAATCGGGGCAAAGCTGCCTCGAGCAGCATGATGAAGTCCTCGAGCTCCTCGGTGACTCCCACCAGGAAGTACTCATTAATGAGGTTAGACTTAGCCTGGTCCATGGCCCATCTGCTCCCTACATTCCTGAGACCACAGAAAAGGAAT--AAAACTCGGTCACGAAATCTGCTAAGTGT-----------------------TGTGGAGGAAATAGGGAGGCAGGCGCGCAGGCGAGCACAGTAGCGGC---AGCGCCCTTA-GAGGGCACCTCTGGGAAGGCGACCTGGATTCTAACTCTCCCCACTGCCACACAGA---------CAGACGCTCCTGAAGGGTTCTGGA-AATGAA--CTGACTTTAAGGACGGTTTGTTTG--GATCATACGTCCTTTATCTGACTTAGTGTGCAC----------------TATGTGTTTT---------AAAACT----------------------------------------------ACTCTAAAACTT---TGCTCATTCTGAGAGC----------------------CCCTTTGGTAAAGTAGAAGCAATTTGTGTTTATTGTTTATCTTAATTTGTAAACTCCATGTCTTTTCTTTCCATAAGCTTTAGTGTTTCCTGAAATTCTGAGAAACAGAAAGTAGGTAAGAAGAGGCTCTGCTTACAA-----TCTTTTTGTTTACAGTGTGAGCTAATGTTGTTAACGGGTTTCACCCTAAATAGACTGTACTTCTGGGATCTAATTAGCACCAACATTCTTTACGCTTAACTCTGGCTCTGCATTTTAAGTGCCAATGTGATCCCAAGGCTGTGGCTTCACTCTATTTTCTCAACTATTAAAACAAAGTCAGAACCACAAGCCAAAAaactgggtgtggtggtgcattcctgttatcctggcacatgggaagtggagacaggagggttacaagttcaagggcagcctgggctacaagagattctacctcaaaagaacCTTAAAGCGGGGAGAAAGAAGGGCTTAGTTGATTTCTAAGGTCTCCCCAAGCTGTGTATGAAATATATGAAGTATCCTCTCTATTTAAAACTC------------AATTGGGCAATACTTTTCATTATTCAAAAGcagggcctggcaaactttttctacaaaaggcagagagtaaatgtcttaggctttgtagg---cgatatggcttaaaccatattg-tttaagtctgct-----------atctcagcagatggtaaatgcaccagcattagtggctgtgctct-ataaagctttatttac---------aaaaCGCAAGTTCTCTG------CCATATCTGGGCCATTGAATTAGTTTCCTTTTCAGAGAAAGTGGCTAAAACCTGA-AAGAC--TCTCCCAGCGTTTCCAATTCTCTTT---CTATGAAGATGCTTTGGAGCAGCCTAC-AGGCAGGACCTTAAACTTT----CTGTCAATCTACGCTGCTCAGATAATTTAGAAATCTCTTGAAGTTCCCATTATAGTT-TAAGAAATATACTAATTCAGAATGGATT----TTGTTTCTGTATTTTTCTATCAAAATGATTGAATAaaccaagtatggcagtgcatgtctgttcccagcactgcagagtctgaggcaagcgtctcaagttc--aggaaaccaaagggcgggcacacagcCCGGTGATACACTACTTGCCT------CGCTTGTGC-AAGGCTCCAGAT----CTCATCTTTAGAGCCCCCAAAATAAATGGTCGACTAGAATAAATAAATGAGT-ACAAA--------TATTTAAAGAACTTGGACACAGGACATTCTGGGGATATAAGGTTTTTTTAAAATTAAAATCCCTTCTTACCTCGTGTTTACTAGCTGACTAGATTACAACCACACGTTATAAGAGTATTGTTGGATACTTAAA----AACTCAAAATAAGTTTAACAATAAAATCAGATGAATACTTCTTGGCTTTGTTTGATCTACTTGAAGCAGTAAACTTAGGACAAAATAAGGTTTCTGAAATGACCTCTGACCTCTA---AGATCCTCTGCTGCAATTCAGCAAAACAGAACTCCAAAG-CAAAAAT---------AACTGCAGTTGATAAGCCACACCGTGAG---AGCATGT-TGACAGTGAACCTTTAAAACCATTTAGA---GAAAACAAATCTAGATAT---TTACATGTCAGGTGAGGTTCGGACTCTCA----TAATTCTCTATCCAGCCCTGG-CTACCCCAGCCCGGCTCATGGGATGTGGGTTATGGAGGTAAGGAAGA----AGTTTATTATTTAGTTTCGTTTGTTGTCCTACCAGCATTCTGAGCTGTGGCCACAGAAGAACGGGATCTGAAGCCAGAGCTTCTCTGGAGCACAGTCGGAGCCGCCCTCAGCCACACATTCATCGAAGGTCTGCAGCAAAGACAAG--AGCGCGGGCAAGTCAAAA
s HiC_scaffold_1 130605069 2216 + 233722169 ATACCTGTACGATAGAGCTCTGTAGCACCCCTGAAAAACCGCGGCAAAGCTGCCTCCAGTAACATGATAAAATCTTCAAGCTCTTCAGTAACTCCCACCAGAAAGTACTCATTAATTAGATTATACTTGGCTTGATCCATAGCCCACCTGCTTCCCACATTCCTGAAaccaaagcaaaagaataaaaaatttgggTGTGAAATCTGCAAAATATTTCTATTCTCTGATACTGAATACTATGGGGAAAATACATAAACA----------CAAGTACATCCACAGCTCTAATGCCCTTCTAAGAGCAGTCTTTGGGAGGCACaactgtttttaatttgttttgctttcacatCTAGTGCTAATTCAGACTTTACTAGACGACTCAAGATAATCAAAGTTTACTTTAAGGACATTTTACAAAATGCACATAGATAACTGGTATGAATTAACGTGAATTAATTTAGTcttcttatatttgttttttcattttaagaacttTTCCTCCAAGACAGAGTATCACTGtgaagcccaggccagccttgaactctgAATCCTGCATGAATGTCCCAAGCGCTCCACCACACCAGGTCTACAAGCTCTTTAGTAAGATCTTAGC-ATTTGTGTTCAGTGTGTACC-----TTGTGAATTTAGTGTTTTTG------ATGAG-TTTAGTGTTTCCTAAAGTTTCTgagaacaaaaa--aaataaataatggctcTGTTAATGACTTCTTATTTTTATCCATACTGTCAGTAAAT-----------AGTTTGCCCTAAACACA---TACTTTGGGGTTCCCTGTAGCACTAACAGCCTTTA-----AATTTCAGGTCTGC-CTTTACGTAGCTTTGTGTTC--------------TATCTTTGTTGTCttagctattaaaa--------------------aaaaaa--------------------------------------------------------------------------------------------------------------tgtagcggGAGGAAGTAAATG---AATAGATTTCCACAGTCCACCTCCATTCTCtatcaaacaaatgaaaga-------aattaaaaagtcctGAAAATGCGTCGTAGAGCAGTACTCTGC-----TTGAAGGCAGAGCTTGGCAAACTTTTTCTATGAAGGGCCAGGAAAAAGTATTTTAGGCTTTTCAGGTTACTGTATGATTCAGATCATAGTGACACAACTCTGCTGCAGCCTGATGGTGGCTACAGACAAAAAGTACACAGACAGATACAGCTGTGTGCTAAAAAAGCTTTATTTATCAAGCAGAAAAAAGGGAGGCACCCAGTGTGGTCCGCAT-GGTGCCATTTGCTAA--CCCCTATTCTAAGAAAATGGTTAAAACCTGAGAAGACAGTTTTCTTATGCTTCTAATTCTTCCTGTGCTATCACAACGCTCTGAAATAATCTACTATTTAGGACTTTATACTTCACAGTTGTCTAATAATATATCTCAAATAATGAAGAAATTCCTGGCAGTTCTCATTATGGTTCTAAGGAATATAC----TTTgaatgtgtttctattttttctac-ttttcctattaaaatgactgaacaga------ataaaaatgcaCAATTATTAAATACTCCATACATTCTTAGGAAA------TAAATTCTtaggaaataaa-----gataaaatatcttttttttccacCTCATGCTTATTAGCAGATTAAACTACAACTACAACTTTGACTCCTCTTTGAAAACTC--AGCTTAACGGTAAAGCCAGGGAAACAATTTACTCACCaagcctctttttttaaaaaaaaaaaaaaaaaaaaaaaactgggga------------tcagactcaca----------acctcacacttgccag-----------------acacgtgcttatgtcactg------agctaaatcccggccctaACTAAGCCT---------------------CTTCTTAAACTAACTTGAATGGC-TAAGACAGTACTCTTAGGACAAAATAAAGTTTATCAAATGACTTTTGGTCTCTAATTAAGACTTCGTCTGAAGT----AAGAACacaacaccaaaaccaaaaattttttaaagaacagcaaCTAAAAA---ATTCCGTGAGGATAACATATATGAC--TAA---TTTAAATGCATgtaaaagtaaacagaaaattaGGTATTAATTACATGCTGTTTTTAGTCTAGTCTTTCACTGGTGTCCCTCTAGGTAGCTTTGGATTAACATATTCATACTTACAAGATGCAAagtacaaaaataaggaaaaccatAGTTTA--AACTAAAATTATCTG----CCTACCAGCATTCCGAGCTGTGGCCACAGAAGAACGGGATTTGCAGCCAGAGCTTCTCGGGGGCACAGTCTGAGCCGCCCTCGGCCACACATTCATCAAAAGTctgcaacaaagacaaagcagcacaGTGAAGTCACAA

a score=16870
s chr3           144447255 378 + 160039680 AGCAAGCGCGTTACCTTTTTGTCTCCTTGTTTCCGTCTCCTTAATCCTGGTCTGTAATCATCTCCAAACCTCAGGAAGTAATAGTAGGAAACTAGCCTCTCAATAGGGTCCCTGATGACATTGATATAAATTGGTTTCTTCTTCACACCGAATCTGAAAGAGCAGAATGCCAGGGGTGGGGTTAGGACTCTCATTA-GTTCAGGCACGGCCTGAAATTATATGCAAAAATCTAAAGTACTCATGGTATACAGAAATAATAAAATAAGTGAACTA--AAATAAAATTGAGTATG--TGAAGACTGGGAAATATTTCA----TATTCAGGATGCAACAAAGCAAATAAAAAT----AATTCAAGAAACAATAGAGAATATCTACCTATGCCCT
s HiC_scaffold_1 130617236 386 + 233722169 aacaaaaatattacctTTTTGTCTCCTTGTTTTCGTCTCCTTAATCCTGGTCGATAATCATCGCCAAATCTCAGAAAATAATAGTAAGAAACTAGTCTCTCAATAGGATCCCTTATGACATTAATGTAAATTGGCTTCTTTTTCACCCCAAATCTGAAA---TAGGATAAAATTGATGAAATCaacatttttattgtgtttaGGAGTTTCTTGAAATTACACATGGAAGTCTGAAGTACTGATcctatatgaaaata--aaaatgaataaaccattaattgaaataaaatataattaaagaatgGGAGATTTCTCACGCTTATTTATGCTACATTAAAGCAAGCAAGAGTTAAGAATTTAtgaaatgatggtgaacattcaCCTTGACCCT

a score=31533
s chr3           144452507 1717 + 160039680 CCTCTAACTGATTCCATTTAGCtatttatttaaaattgtc----attctattaaaatttttacaatatattattatttCCAGTAACATGAGCCACTATGAAAATATTCAAACCC--AGTGTGGCTGTCAGTGTTTAA----TAAGATTATTCTTTAAAATGCTTTATCCGTTTCAAGTTCAAGTACCTCGGTGAACATCAGAGCCTTGTTCTACATACAAGACTGTGCCCAAAGCCAAGGCACTCAATGTATAACTTTAATAATGAAAACCTACAGTATTAGAATCCAGGCCATGTAGAGAAAGAAAAGCCCCAGACCACTAGGTGAAAGG-TAAGACAC-TCTGAGTGAAGGGTAGCGTAGCCCTCAGGGAACACGCACATGTGAATGAAGTCTAGGAAACTGGTTCAGGGCCTCTGCAGAGAGAA---TTTTTAGTTTATTTTAAAGCCGCCTATAAAATGCTTTCAATATTGCAGTATGAATTATTTATAGAAAACTGTACACTTAACTTGAAAGTTACAATGTTACTAAAAGATCTTAGGGATTATGAGGGAAAT------CAAGATATATCACTTTAT-TGTGTAATATTCAGGCAATTC---TTTAATTATATGATTTCCAGAGAAGCTAGGATGTCCCACTGTCTGACCCTACGGCACGCTGTTCTGTCCTTTTCCTTTTCCAACCTAAAAAGTGAAACCGAGA---CAGAGCGAGCTTC-TCTTAGAGCAGACACCGCT-GCTAAGGTAGAACCAGGCTGCGCATGCCCACTGTGGACAGTCACTTTCCGTCGTCTCTGAAGTCAGCAGAGGGTTATCAGCAGAGCACGTGCGTGTGGGCTTTTATTGTAACAGCGCCATGTGCTCCATGGAGAATGTTCAAACGGGTCTTATGTTTAGACTATTCCTTTTAACCAATTTTCTGATTACTCTTTAAAGATGCAAGGGCTCCCAAGGGGGCCACAGAATGCTTGAACACTGTGTATTCTGCAGTCTTTTGAACTTTTCTTTAAGAGAATTAAGAC--AAAATTACCGTGACTTATACAATCATATTCAAACATAAAAGAAAAT----TCTTAGTTTTTAA-AAAGTCTCCCCTTATATCTCATAATTTCAAAGCTGAAACACAGTGGTTCGAGGAAAA------------------GCATATTAGGGTACCAGAAACTGAGGGGGGTTTCTCTGTTCTCTGTCAGTGACCTGGT---GAGCCCATTTGACTGACC------------GCACACTCGTGGAGTAATCAGCCGGCCTCCAGTACAGGTG----AGAAACTGCCACA----------------------AGTCCCTAA-CATAACAGAATGTGAACTGTCA-----TAATTAGCTCGAGACGTGTCCTTTTATGACCACTAGAGGGCAGTAAAGCACTGGAAGGAATATTTAAATCATCAGTGTACAAGTGGCCTG------TCAGTG-TGTC---------------------------------TAACAC----------------TGCTCACAGGCAGAGGACAGACAAAGCACTCTTCAGTACATCATTCTGGATGCTACTTACTTTGCAAAATCCAAGTAAGAGATGTGTCCGTGATAGAAGCCTGGCTTCATCTCGTTCCAGGTGGTTATGTTCTTCACAAAGCGCACCTAAAAGAGGAGGACATTCTCATTACCTCACTGCAATGGAAAGAAAGCAGACTCTGTCATCAACAAAAGACCTCCCACTCAGGAA-------CGGGACCCAGTCCCCGCATTCATGGGGCTGGAAGGCCA-GTTTGAAGTAAG--AGCAGTCAGTGGAGTCTGAACGCACTACTTTACCAC--GGCCATGACCAGTGCA
s HiC_scaffold_1 130626077 1756 + 233722169 cctctaGTTGATTTTGTTTAAGTATTTACTCAAAATTGTTTAGAAGTCTACTAAGttttttacaata-atttttagTTTCGGTAATAAGAGG-ACTACGAAAATATTAAACCCCTAAACATTCATGTCAATATCTAACAAGTAAGAAAAGCTTTCAGAAAGCTTTATACTTTTCAAGAATAAGAACCTAAGCATATACCAAAGTTTTGTTTTA------AGACTTTGCCTAAAGCAAAG--ACTcaatacataattttaataatgaaaacctAAAGTATTAGAAACTGAGttgtatgtggaaaaataaatcat------ttaggTGAAAGGATAACAAACATTCAATTCAAGGATAACGCAACCCTGAGGGAAAATATGCATATGAATGAAGTTTATGAAATTGGTTCAATGcctctgcaaagaaaaaaataattagtttattttaaagctacccataaaatgttttcaatattgCAGCATgaattatttatagaaaaatgtacAACTAACTTTGAAGCTACCACTTTATTGAAAGAC----AGTACTGTGGGAGAAATAGAAATTagaatatatcattttatatatgcAATATGTGGGtggttcctttttaattttatgattccCTGAAAAGTTAAAAGATTT-ATTACCTGTCTCAATCAGAGATGTTTCAGTC----tacttttcaaatttaatgaGATAAGCTGAAAGTGAAGTATCAGTTTCATTTTACACACTATagtgctcgcttcggcagcac--------atgTACTAAAATTGGA----------------------AAGATAGAGAAG----ATcagcatggcccctgcgcaagga--tgacacgcaaGTTCGTGAAGTGCTCCATA------------------TTTAAATTTGCACCCTATCTTTTA--CAGTTGGCAAAT----------AAATGAA-----------------CATGTATTCCTTTAA-ATcatgaatattaaagact---gaACTATGTTT--AAAGCTTTAACAATGAAAAATGCTGGTGTTTCTAAAGTTAATGCAGAATATTAAAGGAAACAGGATTTGAGGCTTTACCAAAATGGCATTATATGTACTACAA---AAGAGTTCAAATAGATCTGCAAGACTCATATTTCAACTATTCCTTTTTACATGCTGGGATACCAATAA-TCATGTGAGTTTCTTTGCTTTCT---AGTGAAGTGGTATAGTTGCAATCTGATGGATCAGGCTGAAACTTGAGTTCTCCTGGAACAG---------CACCATTCTGGTTGTTTAAGAAATATACACataataatgatagcttaaaTAACATTACCTAAATTTAACTTAACTTGAATTTCTAGAGTATAATTAACACGAAAACTGCCAATTTATGAACACTAGAGGGCAGTAAGACACTAGATGGA-TATTTAAATTACGGATCTAAAAGCAGCAAAGACAATTCAGTACTGTACATTCTTATTTTGGAAAATCAAAATCATAACAATAACAccacttcttttatttatttcttttaggttGCTGAAGTACAAGGCATTCTTTAGTGTGTCACTTTAGGCATAACTTACTTTGCAAAATCCAAATAAGAAATGTGTCCATGATAAAACCCTGGTTTCATCTCTTTCCAGGAAGTTATATTCTTTACAAAGCGAACCTAAAAACAGAGAACACATTTGTTAGTtaagtacattttaaagaaaatgaaatttgatgATAGAAAAAGATGATCAATTTAGGAATTTAAAGCCAGATGCCACTTTGACAATTACGGAACTAGAAAAACATTTTTGGATTAAGCAAACGTGTAATATAACCTGTAATTACTAATTCACTATAGAGCTACTATCAGCGCA

a score=31792
s chr3           144459439 2018 + 160039680 AATCTGCAATAAAGAAAAGGG------GCTGTGGCTTAGCTT--CTCTCCAGCGCAGAGGAA-GTG-TGAGTAAACGAA--GTCTCAGCG---------CAGGGCTTCACTTTCTCCTCTGGAAAGCACCTGGGATACGCAGGAGTG-CGTTTATG-GCCA--GACCTCTCATACACC--------CTTCCTCAAAGCCGGTTTCCATGGAGATGCTGTAAGTAAGCCTTTTCAGAATGGCGGTTCTGAAGGC--TTCCCTTTTAAAATATCGATTGAGCCACTTTCCCTCTCAACCACGGTAAATGCTCATCTTCTTTCTTAACTGTCTCCCTGTCTCCAGCCCACTTCCATCCGCTAACCC--------GTCCAGTC--AGTTCCTGCATCTGTCATTTTCGGCCT---------CTCACTCCTGCCCTGCATGTTTTGTTTTCTTCTGGTGTTCTGC---------------------CACGGGGATGTGGCCCACAGGAA------------------------------------CCAGTACACTTCACAGACTCT-------------GCCTTGCATGCCAGGTGAAG-----GGCAA-----TAAAACCCAACAGCATCAGATGAT-TTTGAGGAGGCTGAAAGCACCGG-ACACTGGCAAAGATAAAAG-------AGAGA----ATTCAGAG--TTTCGACACTCTGATTGAAGCGTGCTATCAAGAAGGATGGCTCAGAAGGAGTAGTTAGATACAGTACATG--AAAATAACACTTTTATGGCTAGCCTGGAGCGGATGCTAAACTATGACTTCT---GTCAGGTTGTATAACTCCAGCAGAGCTGGGCTAGCAAGTAATCACAACACACCTCTAGGGAAAACATAAGCCGTGGAGGTGGGGGGACATGATTTATTTACTTGCTGAATCAGACCTGAACCAACACTAAAGGAAAAAGCCAAGACAGCA----------------------------CCATC------GCAAGAATGTT--GGCCTCCATTCTCAGTAAGCTCAACTCTACACTG---ATATCCGAGATCACAAAAGAACTCATTTCCAGTATCTGAAGGAGTAGGA--GTAGTCCTGAATGCCCTGGCCTACTTCCAACTCTGTAATTACTATCTATTGAGATGAAGACTATTATTAGTTTGAGTAATTACTATACACCA-ACTCCTACTGATAACTTTACTTTAAATAAATATTTCTTGTATAGCCACAGGCATATTTTTTGAGTCTAAACCAGGGAGAAGATTTTCTACACTAAGGGGAAAC---GTGATGTGCAGATAAGGAGTA-----AGGAGTTGGCCTCTGGCACACAGCCCTGGGACTGAGGTTCAGATCCGAGCTGCT-----------------GTGGGGGGTGAGTTC--TAAATCACTCAAGAGGGGG---AGGTAAAGTCTC-ATCAGCCAGA-GGGTTTACTCTGCTTATAGCTGTAGCCATGGCACTGGGGACAG-CTAGGGACCACTACCAAAATCTAGGCTGGCTGATTTGCTTATACACTCATCA-------AGTaacaaaaat----gtatcaagtaccttccatgccttggtcactattc--aaggcatgtggcat-gaggtatacagtggacaaacaatatgtctgccctttaggggc-ttacactacaatagag----gaaaacagggagaagccaaactaatatgcaaggtaACTGAATAAACTAACCAGTACTA------------GGAGTGATGTGGTCCCAA----TACCTTGGAAGTGGTATTTAACTTAACACAGGATGGCTAGGCCAGGTCCAAGAGCCTGTCACTGAACAAGAAACACCAAACACATAGCATGAAAACAATTGAAGAAGAAATGCACTCTA---CAAAATGGTAAGAACAGATGTGTAGGAAGGAG-------AACGG------------CTTGTCA------GGGTTG-----------------------------------ATGAGCTCAAAGGCCGT-------TTCATCTACTGGGTGACAGCTTGATGCAATAGTTAAGAGCTTCCTTAGAACCGGTGTACTGGCCTGGATAAGAAATGTGAATACTGTAGGGAAAAGCAAGAACATTAATTTAAAGGTAAGTGAAACTTTCCAGGAAG---------ATCTTAACATG-------CAAG-------------------------------------------------------GTCTTTCCGTCAAGTGCAAGTAGCTTCCTAAGAACGCACATCAAGCTCCATTTCAGTCCAGCGCAGTAAGAGGCTGAACTGGAACCCATATTTAGCTTATATAGTATAGGCTGCAAAGGGTTAGCTAGCTTGTTGCTCTGA
s HiC_scaffold_1 130631380 2372 + 233722169 AATGTGCAATAAATCAGAAGATGCTGAGCTGAGGTTGACCTTTCCTTTACAGGGAAGAAAAAAGTGCTAAGCAAACAAATGATGTCAGTAAGACTAGACTGGTGCTTCACA--CTAATCTGGAGAACAGTCTGAACACTTAGAAGTGGCACTCATGTGCCACTGAAATTCCATATTGCTCTTATTTCTTCTTCCAAGTTG-TTTCCAAGGAGAGAACATAAATCA-CCTCTTTGGAAAAGAGTTTCCTAAAGCAGTTTCCTGC---AGTATTAATTCAGCCACTTCTCCTTTTAGCTATGGTTAGCATCTATGCCCTTGTTGCTCCAAGTTTCCCTCTCCACTTCATCTCC-TCCATTGCCCCTTGTATCAGTCCAGTCCCAGTTTCC-CCTCaatcattttctcatttcctgtagGCTTGCTC-TGTCTTGCAG--TTTGTTCCCTTTTGGTATTCTCCTCCACTGGGCCAGTACCTCAACACAGGGCTCTGGAACACAGGGGAGCAAGACCAGGAAGCACAGATCAGAGGAGCAGACCTCAGTTCATTTTATGGACTCTCATGATTACATCCGGTATTAATGAAGGGTGAAGTAACAGGCAGAAGAGTAAAATCTAAAAGTATAAAGTGAAACTTGAA-----TGAAAGTTCTGCCatacagagaagaaataaagccACTATAGTGACTTTATTCAGAGAATTTTCATACCCTGATTGAAATATGCTATCAAGAAGGATGTTCCAGA---AGCAGTTATATACACTACATGGAAAAAAAACAGTTTCATGGCTAGCCTGGAGCAGATTCTAAACTCTGGTTTTTTTGGTCAGATTTTATAACTCAAGCAGAG------TGGTAAGTAATCACAAAATACCTTTTGGGAAAATAC-AGCAATGTAGGTAGTGTACTGTGATCTATTTGCTTGCAGAGTTGGAACTGAACCAATAAT--AGGAAAatgctaaaaaaacaaacaaacaaaaaaaaaaacaaaaaccctccaTCTTACTAACAGTAATATTGAGACTTACACTGCTAATAAGTTAACCTCAACACTGTAATTATCTATGATCACAAAAGGACTTGTTTTCACTACCTAAAACCGTAGAAATGTCATTCTGAACATCTTGGCAAAAGTTCAACTTTGAAATTACTATCTACTGAG-TGAATCCTACTATTAACTTGATTAATTGCTATATACCATACTTCTACTCATGCATCTacttaaaataaacatttcttataTGGCTATGGGTAC-TTCTATTAGACTAAACCAGCAAGGAATTTTTCTGCACTAAAGGAAGACTAAATAATGC-TAgattaaaaatacatgcaaagtTCTGCAGCTATT-CAGGGTATCATTACTAAAGTTCAGAGCTGTGTTGCTCAAATTTTGGGTGTGAGATGGGGAGGAAGGTTAGCGAATCATCTGAAAGGTAGCACAGATCATATTGCTATCAACCACAGGGGTTCATTTGGCCCATAATTATCATCATGGTACCAAACTCAGTTTATGAATCACTATTAGAATCCA-ATtggcttatttgttttttcattgatCATTCATTTAGCAAAAGAACTTGTGGTGT----TATCTACTATGTCTCaggtaatattttaaatacaaatgatatagtggtgaaca--aaacagacaaggTTCCTTCCAATAAGTAGCTTTTCATTGTAACAGAATTTTATACATAGATAGCAACTAAATCAGCACACAGGATAATTTTATAAGCTGA-CAGTACTACAGGAAGGATACAGAGTGATTTGATACTGAGTACTAACTTGGCAGAGGTATTTCAT---ATATAGGGTAGCCCAGTCTGGTTTGAAAGAACATCA--GTCTAAGAA--GTTAAATGGCTAACATGAAGCCAAATAAGGGAGAAA-GCAGGAGAGAGCGATATTCTAACAGGAaatgtgggccagggatttagcgcagcggcataagcatttacctggcaaacatgaggttgtgagttcgatccctgataccaaaaaataaagaaatgtaagtGCAGAGGCCTTAAAATAGTATATATAATCAACAGAAGGCAAGAATACTGGACAAAGACTAGATTAGAAAGGGCCTACTGGCCTAGGTAAGGAATCTGGATTTTA-AAGCAGAAACAGGAATACGAATTTAAAGCTACATTAAGCTTCTGGGGAAGAATATAAGCATCTTTCTATGTCCTCATCAAGAACCATGTTCTACATCACTGCTGCTCAAACTATGGTTTAAGAACCGGCAGCATCAGTTTTGGCACTCAGTGGAAG-AGTTTTAGAAATGAGAGTATCAGGCTCTATCTTGGCACCTCTtaatcagaatctgcattttaactaATAATTAGCATACATAGTATATGCTGAAAGCATTCCTCAAAAGTGTTGCTCTGA

a score=41802
s chr3           144463177 2629 + 160039680 AGTTTACATTCAGACGAAGCTTCCTGGGTTG-----AATTAAAGACCCTCT---ACACA-CGTCGTGCTAAGGATGGGGAGCTG--GACATGGCTTGTTTTCAGAAAATGGCTTCTGTACATGAGATCGGTATCAGAGGACACCTG--------TGTAAGCCACGCCTGAT------CAGG--------ACCCGGTTTTGAACTACCAGTTGACATTTGG--AGTATGCCATTTAACGCTTGAGACTACTTCCCTAGAGTGTTCTAGACAAGAAGGCCTCGCTCGGTGCTGTTCGCTGTACAAAGCAACTGCTTTAG-GGCTGTGAGTCTGCTTCTCGGCTGGGTTCTTCCAGTGTATAAATGCCAAGCCGCTGAACGGAAAAC--AAGCTGTGTCCGTCCCATTCACATGTAACTGG--AAATGCAT--CTACACGGTGCTGATAAATGTCATGTGTGCTGAGCATCTCCACACTTGCATTTCATGAAGGAAAAAACCACGGATGCCATTGCCAGATACCT-GTGGCTGCCAGAAAACTCTGGAAGGTTGGATACAAAAAAG---TAAAAATTGAACAAACAAGTTAGCATTTAAAAAAAAAAAAAGTACTGCTGAGGAAACCTGAAGCTATTATTGAGGGTCAGGCCACGTTCCTTTGAAATCAAG------TATTGACTGCAAT----GCACCAA--CACAGACCTACTACACCGTGTGCAAAGGTGACACTCAGTGTGCCGCCCCCTGAGATGTACAGT----------GAACGGTTTTCTTCTTTTTTTAAAGACCAACAGTTTTAAAAAGCTCATGTTTCTTCTCATCTACAGAAGTATTACCTGGTCTGGCTAACAGACATATATTTTTGGTTCTATACAAACA--TAATAAACGATCCCACAG--ATCCCAGGTAGTCAAAAGCAGATGGGTGGTGATA--------ATCATTAGCCTTCAAAAGCAGCTCTCTGGCAAGAA----CAAGTCAGCTTCATTCCCCGGG-------------CAGTGTAAGTGCTATCGATGAGCT-AATAGTGGGGAG-CAGTCAGTTT--ATAACAGAGCAGCTTCCACCGCTTCCAAACAGCTCAAGACCTCGCTGCAGCAGGTAGGAGGGATACCTTCTAGTG------GAGCTTCGCCAATATGGCGTCTGCGGTTAACTCGGATTCC-----AGTGTCTTTTT------AGGATGGTC--ATACCCATGGCCTTTAATATGTACAAGGTGAACTTTACC----ACTGTAGTCACCATTCCAGGTTTTGATAGAAATGGATAAACTA---------------------GATTTCGCTTCACAGTATCCTCTAT---------------------ATTAAACTCCCGTTCGTTCATCTAAGA--CCCCTGACTATT-AAAAGGTGAGGTTTTGCTAAAGACACA-GCCACCAT--CTGCTCTCCAG-CAGGTTGATTTATGACTAGTATTGACACGAGTTACTGAAGATGGCACTCAGGAGGGCA----CAGAACGGG--TACAGGTACTGAGCCAACATTTCCTCATCATAAAGTGAGACAATAAACAACTGCTGCAGTGGGAATCTTGTCAAGTGTTTTAAAAGCCAAAAACAATGCTAAGCCGGGCATGATgtggatgtctgtgagtttgaggctagcctggtatatgtggcaagctccagataaccagttactacctagagagaccttgtctcaacaaacaaaCAATAACAAAAAAGAGATTCCGAACTGAAGAATATAAAAACTGTCTAATACTTCTAGCTATCTATCAATTTACTTATTTCACAAATTTTTGACTATAGACTAGATGCAAGAAAATGTGTCAAGTGTAG-GAAAGCTATAAATTCATATA----------TATATATATATATagagagagagagagagagagagTTAGTTTTGCCACCTACCTTCTCCCCACCCACAACACTTCATCCCTT-GCAATACCAAATTTGAGGAGATATCAGAAAGTATTTGTGTATTTCCTACATGGTAATTACCTGATCTTGCAATGACATTACTGGGTTATTTTTGGTAGTGTTGATGTGAAGAACATGGTATCTATTCTTTGCACACAGGTCGTAGGCTATATTGGTGAACGAGGTGCTTGCAGTTTTGGGCACTCTGTTATAAATGATGATTATGTCTTCTTCTTCATCCAGAGTTGCATCCTGCCGAGGGCCATCCATTGTATGGCGCTGTTCAATTTCTCGGACTTCGTGCCTTGCAATTGCCCTTTCTGCA-AGAAAAGGAAAGTTCTTTACCTTTTAAATTTTCATTTTTGCAAAC---------------------TTTACCATATATATAACCTTACAAATTAAAAAAAAACCCCACACACCAAAATTAACCACCACACCCTAAGTCTATAC----ATCCCAGCGAATGTCTATACACTTTCTATAGCCATTCTGAATGTGTTCTTGATAGTATTAC---AAAATTATGAACAGATAACTTCTGAATATCATAAGGTGAGAGAAAAACAAAAG--AAAATGAAAACAAAGAGCAGAAGA-ACA-AGGCAGGCCGAGTTTAAGAAGACAATCTATAAGGTATAAGTCTA--TGATTTCTATA-AGCCTCAGCTCAGAACAC--TTTTCCTTCCCAAGGCCTGAGGGAGAATGGTTG----------TTAAAGGATTCAGAACTTCTTCCACAGGAC---AGAAAGATG-----CAGAATAAGAACAGAAGAACAACTAGTTC----------------------AAAGTGTACTTCA---CAGTTCCAAAGTCACCATCTGTCCTAACGGAGCTCTCATTGCCTCAAGTAATCCTCAAACACACAG
s HiC_scaffold_1 130634184 2635 + 233722169 agtTTACATTCAGATAAAGCTTACTgattcagaggaaaataaaaatgctatctAATATATCATCAGGCAAAGTAAAGTAACCTGTAAATACgatctgattttaaaaactg-tttctaGGTATAACAACA-TATAAGTAAATTGCAGATATTGCATATTAGACAAGCCTAATTCTACACAAGCCAGTCGCACCACGTTTTGAACTACCGGCTGATTTTTGGGAAGTGCGTCAGCTAATGATTAACTCTGCCTacacaaa-tgttttaaa------------------tgttacaCATTATATAATCAAACTGATTTAACAACAGCACTTATGTGTCTCC------TTTTTCCTATACATAACTAACAAGCTATTGAAAGAAAAACGGAAGCTTTATCT----TATGCAAATTCAACTGGGAAAATGTACTACTACACGATGTCTATAAATGT-ATATGTGGTGAGCTTCTGCAGATctatatttcatgaaaaaaaaggTT---GATGTCATTGCCAGATATCTTGTAGCTGCCAGAAAATTTTATAATGCTAGACACAAAAGAACTctaaaaattgaacaaacaagctaacatttttctaaaaca----taCAGCTGAG---ATCTGAAATTATG--TGAACATTGAAGCATGTTCTTTTTAAACAAAGGTGAATTATGAAAGGGAATAATggaaacaaatttcaaatctacttCATACtgtataaaacagaatattaaagatgCTTGCCTTGAGCTACACAATATTACATAATGAATAGGCTT----------TATGAGCCACTTAGCTAAAAAAGCTCATGTTTCTTCTCATTTACAGAACAATTATTTGGTCTGGCTGATAGATGTGTATTTTTGGTTCTCTGAAAAAGAGTAATCAAGGATCCTGCAGTGAGCCTAG--AATCACAAG-----GGAAGATGATATGACACATGCCATTAGCCTTCATGAACAGCTCTCTAATCAAAAGGTCTACCTCAACCTCATGTATCAAAGTGACTCTTGTTTCAGTGTAAAAACTACACTTACACTTAATTGTGGGAAAACTGTCAACtctaacaataaaacagtttcagcTGTTTTCAAACAGATAAATATC-AATTATAG----TAtgatttgtaatacataatgtacAAAAAGCTACTCTAATATGGCATTTGAAGCTATAtagtattttcaaatattatcttttttttctcatga-GGTCTAATTTTCATTCCTTTCAATATTTACAGAcataagtttatttttaagtatagTTAA-ATCTCTGGATGTGGGAGAAATG--TAGGCTACTGTTACTAAAGAGATGAGAAAACCtgatttcataatttccttcatttttcttacaAACAAATCATagttatccatccatctgttgatcTTAAAATTTCTTGAAAGTTTAAAAAGCAAGATTATGCTAAAGACATAAGCCACAATTCCAGTTCTTCAGGCAGCTTGGGTTattgtttatat----aaaaattattaaagag---atTTGGGAAGTCAGTCACAGAATTGAGTTACAAGTATTCAAAACATATTTCTCTatcataaattaaaacaata--taattttatcaTAGGGTATCTTGgcaaa-------------------aatact------------------------------------------------------------------------tcattttcttaaaatgctacttctgaatataaaaatatt-------------tt------------attcaaaaacttttt----------------tattaattcatttacttCACAAGTACTTGAACATATA-----TGcatggaaatatttcaaatactgtGAAGGATGTAAAATTACACAAAAGTTGGTTTGTCTTTTCCTGTAAAAGG----------------CTTACTAAACTCAGTACCCATActccttttaaaatactttatcccTTTGAGATGTACAATTTAAGGATGTATAAGAAAACATCTGTGTATGCCCTATGTGGTAATTACCTGATCTTGCAATGACATCACTGGGTTATTTTTGGTAGTGTTGATGTGAAGAACATGGTATTTATTCTTTGCACACAGGTCATAGGCGATATTTGTAAATGAGGTGCTTGCAGTTTTGGGAACTCTGTTATAAATGATCACCATGTCTTCTTCCTCATCTAAAGCTGCATCTTGCCGAGGTCCATCCAGTGTATGTCGCTGCTCACTTTCTCGAACTTCATGTCTTGCGAAAGCCCTTTCTGCAGAGAAAAAGACGGGAACTAAGTTTCT--GTTTTCCCCCCgggatactggggattgacccAGGACTGTTGCACTAAACTGCTAATTTGCCTAgctgggacttgaacttgcaatcc----tcttgtaTCACCCCCttag---atgctgggattacagggtgtgccaccatacctC-----GCTA----------GTTTTTAATAACACTGTATGAAACTTATGAACATTGAACACTGGACCATGATAAGGAAAgacaaacataaaagaaaaaacaaaagcaaagatcaAAGCATACATAAGCAAATT--GCTTAAG------ATTTTGGGAGGATCGATCTAGTTGATTCTAAAACAGCTTTAACCTATAACATAGTTTTCCTATTTGAGAACTGAGTAAGAGCAGGTGGAAGAAAATTTTGATAGCTTTAGAATTATGTTTTGATAGCTTTAGAATTATGTTTAACATATCAATAACAAAAGTACAG--AGTCCTTGAGTTTAGAAAGCAAAGACTAGAGAGTACTTCAGTGTGGTTCAAAAATCACTTTacattctaaaataatttctatgaTCTGAATGAATTTTCAAACACAAAG

a score=30388
s chr3           144477956 733 + 160039680 ATTCCTACAGTTTCAAGCCAACGAGATTGACGCGACCAGTCATTTGTGATAATGGGAACTCCTTTTATTTGGTACATGTGAACCTTCTCTCACAAGAAAA-TCTGTCAAAAAT-CACAGTCACA-----GGCCAAAATAACATCTGCAACCCTACCT--------CCTCCAGAAAGAATGGAAGGCAATGTCTATGCTAATA--AAACCGCAAGGTTATTCCCAGTGACTCTAACAATACTCTCTTCTCTGCCTACCCCACTCCCACTACAGGTTCCCAAGCGAGCAGCAAGCTGATTGG-TTTCTACTGAAGTCAGGCAGGTTTTCACTTTGACAGCGCAAACA---CTGAAGAACAGATGCTGTCATCAAGCTGC-GCGTTCAGTTAGTCTCCTCTGAAATTAAGTGAAGCACTTGTTTAAAAATGTTTTCTCATTAGAACATACAATGATCATTTTAAATTCTATCTGCTATAATAGGATATTTCCATGACATTGCAATCTGGACTATGCCATAAATACCATTGTACTCGAACAGATGGAAATCATAAAGTGATATTTAGCTACAGATTTTCTGTCACACAGTTTTGCAAACTGAAAAGAAA--AATCAACATTTGCAACCAACTAGAAACACAATCCTATCTAGTAAGCTAAAGCGATGGTAATGTGAC-TCAGACTATAAATGCCTTCATTGTAATGCTTTGCAGCCTTCTGCAGGAAGAGGAAAATGCTAAAGTGGAGCTTCCCAAGGTAAG
s HiC_scaffold_1 130697102 726 + 233722169 ATTTCTA-AGTTTAGAGTCATCAAAATTTGCA-----ATTTCCTTGTGATATGGGAAACT---TTTATTTACCAAATGTGAAC------TCAGAATAAAAGTTTGGGAAAAGTACACTGTCACATAAAAGGCCAGAATAGCATTGCCAATTTTACCCTTAAAGTACCACCAcataaaataacagaagat----attcTAAAAGCATACTTAAATGTTATTCAAACTGACTTTTACAATAGTCTCC---CTGCCTGTCTCACTTCTG-TATTGGTTCACATATGAACA---AACTGGTAAGATTTCCACGGGAGTGAGAAAGTTTGTATTGTTGACAACACAAACAACTTTGAAGAGCAGATGTTGTCATCAAATTGTAGTATTCAGTTACTCTGCTTTGAAATTAAGTGAAGtacttgtttaaaaatgttttctcattagAATGTACAATGCTCCTTTTAAATTCTATCTGCTATAATAGTATATTTCTATGACACTGCAATCTGCACTATGCCATAAACACTATTGTACTTGAACAGATGGAAATCATAAAGTGATATTTAGCTACAGACTTCCTGTCATATAGTTTTGCAAACTGAACAAGAAGGAATCAACATTTACaacc-actaaaaacaaaatactatctAGTAAGCTAAAGTGATGGTAATGAGACATAGGAACATAGATGTTTTCAATTTAATGTACTATA---TCTTGcag--aaaagcaaatattaaaatgatacttCAAAAGTGAAG

a score=15140
s chr3           144481886 641 + 160039680 AGCATCACTGGCCGCTTC-ACGCTC--AGAGCATTGCAAGGT-----ATACTGTGGTAGGAGGAATCAATTAGTTATGACTGAATGA-CTGAACACACCGAAGGAAAACTCTGGTAATCATGTTACTATGCAGATTTAAAAATGATTGAGTCAGATTTCAGGCTGACCCTCCTCAGCTCCTGAGA------------CAAATCCCTTCTAGGTATGC---TTTCCTCTCCAATATCACACATAAGAAACTTAGACCATCAATTTGT--AAGCACGCATCTTAGACCTAGATCTGTCATCCTGACAAACTACCTCTGGTTCTGGACAGCAGTCCTACTACA----GAGAATTC-TGTCTACTCACTTGGAGAGGGCGCTCAGCACGCTGCTGAGATTTAAACTGTGTTGATCCTGTTAGCTAAGACAGATGGA---------------------GCAGGATGCCAGGCCTTGACTCTATTCCCCATGA--GCAAATGGAAGGATGGAAGGGAGAGGAGACAGACATGCTCATATGGCCAAGCCTTTCAAGGAGTAGTAAGAATTCTGGGGCCACATTTTTGATAAA--GAAGTCAATGCTTGCTAAACAGAAAT--------------------CTGACTTCATATGAAGGAGGCCCAGGGTCTCTTTTGTGTGTTCAGAAGGATTTTATGTTTATTAATAGGAATATTtgtccctca
s HiC_scaffold_1 130702194 692 + 233722169 aGCATTACTGATTGTTTCTACCCTCTGAAAGCATTGCAAACACCACAATACTGTGGTAAGA----------AGTTATGAGTCAATTAGTTGCACACAT-ATTGCAACATCTTGATAATTATGTTACTAttcaggttttttaa-aatcaactaaGATTTTACCTTGACCTTTCGCAGATACTAAAAAATATGTTAATTCACATGCCTT--AGGTGTGCCACTTGCATCTTCAAAATCATGTGTAAAAAAGTTATAGTATCAATTTCTCAAGGTATATATCTTAGACCTAAATCTGTCATTTTGACAGATTGCCTCTGGTTTGGGAATGTAGTGCTATCAAACAAGAAAAATTCTTGTTTATCCCAATAGAGA---TGCTCAACATgacattataatttaaattttgcttgttttgttatatAAGACAGATGGCTGTCCCACAAAGTCACAATATACAGTGTTACAGTAC--AATTCTATTATTGATGAATGAGAACTgaatagtgaaaaggaaag------aacatgtTTATACAATCAAATCTTTCAAGAGGAAGTAAGAATACTGGAGCCAAGATttgggaaaaacaaaatcaaaattaagtgaacaaaaacataataaaattgacaGCTTACTGATTTGACATGAAAGAAATTTACAATCTCTATCCTAGGTAAAGAATGATTTGTTattcattaacaaaaatattttttctgca

a score=17985
s chr3           144500962 1616 + 160039680 AGAGCTGACGATGTAAAAGCACATTAGATAAGCCAAAGCAAGGGTGCAAATGCTGACGTGGCACAACCGTCAGGAGGAAAATGGGCAACGGAGAGTGCTCACACGAGCCCGAGAGAGTCCCTGGAAACTTGAACAAGA--TTCCACTTGTGACAACTGCCACACACTCCTTAGAGCAGGAGGCCCATTACCTTTAAGGGGTGGAG-GAATATACGCACTAGGGAACAGGGGGCCGGAGTTCAGATcaatgcttctccaactttaatgtgttcacgagtcacttgagcttattgaaacactg--tatggat-agtctccggtggggctcaaagggtctgtatctctaatatctctcaagATGACAGCCAGAGAAGACCAATCCA-------------------AAGTTGTACCTGAATTTCTAAATGCTGACTTGGATATTAAACTGAGTTTTGGTTAAAAAAAAAAAAGTAACAAGATACTAGTTTTTGTGAATTTTAACGAACAATTCAACAGATATGTTATAAACACAGAAAAAAGTTAAAATCTGGCTTAAAGGGCATTAGTTTTTTCA-------AACATGTAGAATATTTGTGTGTGTATGTGTTTgagagaggggggaggcagggagcgagggagggagggaggagaggaaggaaggagaggaagagagggggagggggaaagagggagAGGTATTTAAGAGGGCACACATGTGCCCTGGCATCTGTGCACATCCAACTAGTTTTTGGGTGTCTCTttctctcctctcatcaaaggttccaggaaagaaactcaggttgtcgtgtttgtgcagcaagtatttttatccactgagccatcttgcaggtcccAATGGGCATTCGTAATTCAGTAGCGACACTGGATGTGTGAATGGGAACAGAAACATAAAAATAAACTGAATAACATCCATCCCATTTAAAAAAATCC-AGCGTTAATAATTCTCACAAAAAGCG-----ACAACTTGTGCTTTCTTGGTAAAATTACTGTGCACAGACAGGCAAGAAAAATAGACACAGCATCCAACACAAGAGCAATTCGTCA---GCTTTGCTTTGTTGGCTGCCCAGCCACTCTCTTGTGCAGTGCACTTACCGACTTAGACAAGCGTACT-GAGACAGTACTTTAGAAGTGACTCT------TGGCTTGGAAGGAAATTCAGTGACCTGTGTGAAGCATGCTCCCGGGCTGCTGCGTGTTCCCGTGGATACTGAATGTATCTGGCCAGGCATTAAGTGCAGCAGTCGATCCTGAAGACACTTTAGTACTTACATCACATTTCCCTAACCACTTAAAAGACTGATCCATATAAAAGCATAGATACTAGAAACCTTTAGCAAGATAAAAACACAGCTATGACTTAAAGAGCTATATGTAGACAAATACAAGGCTGTCTC-------------------------CCAGTTGTGAGAGAT---------GTTAGCCT------------------------------CCTA-------------------------------------------------------------TAAGAACCATG------TTCATTCTGGTAAGAGATGCAGGATGT--ATTCACTTGCA-----TAAGATCCAACACTTAAAACATTATTTCTGTTTAGGTAGCATCCTAGCTCTTCCATGTATTTATGAACAACACTACTCCCTGGA-----CTA-AACTG-TATTTCTTTGA--AGATTCTCTTTTAGCTTTAGCCCATAGGAACAAAATGACtgtgtgtgtgtgtgtgtgt
s HiC_scaffold_1 130720272 1458 + 233722169 AGAGCTAAGGATGTAGAA-----CTAGATAAACTAAA--AGAGGCATAACAAGTGGCATAGtaaaaccaatgaaaaggaaac-----------aattttcctAAAAAGTACAGACATGCcatgaaagctttaaaaataacttgTTCTTTAATCATGTAGTACATATTTTCTGTATCACATAGCTCTTTATTTTTAAGGGTTAGCTTAAATATAAGCACTAGGAAACACA-------CTTTTAGATCAATGCT-CTCAAATTTTAATGTGTATATGAATCACTtgagtttattaaaatataaattatgtaccAGCCTTGGGTGGGGTCCAAGATTCTTGTATCT--AATAATCTTACAAGTAATGGGCATAGAATACTAGTCCACTGATCAGTCTAATTAGTGAGGTTTTTGATGAATTTCTAAAATCTGGCCTTAAAACTA----GAGTTT-----------AGAGAAGAAGCAAAGTACTAAATTTTGTGAATTTCAATGAAAACTTCAATA--CAAGttgctaa-ataaaataaagataa------------------ttattttatttatagcagaaataaatataatttctg-------------------------------------------------------------------------------------------------------aTTGAAAGGGtc---------------------ttcacatttaaa-aatctgtatgtgTATAT-------------------------GGAAAAAAGCTGAAG------------------------------------------------------------------------------GAAACTGAAGATCTTAA----------------------AACCTTATAAAATC-ATCTTatcaaataaaatcttaaaatcaaTAATTCTCACTAAGAGAATAGGAATGACTTGTGCTTTTGTAGTAAAATTACTGTGAACA--------------ACAGAGACTGTGTCACTTGAGATACCAATTTGTttagtgttttgctttatttattgaCTGGAAACTTATCAGAGCAATGGACTTATTGACTTAGACAAGCATATTTGAGaaggtactttaaaaataattctcagaAATAGCTCTAAAGAAAATTCATTGACCTATAAAGAATATGTTCCTGAG-TGCTC--TGTTCCTGTGGATTCTGAATGCACTTGGTCATGCATTAACCATGCTAGTCAATCCTGAGGACATTTTAGTACTCACATCAAATTTCCTATACCATTTAAAAG------TCATATAGA--------------AAATCTTTAGCAAGAT-AAAACACAGAGATGTCTTGCAGAATTCTGCACAGACCAACAAAAGGATACCTTGAATTCTGTGTTTTTATCCCCAATACCAATCTAGGAAAACAAATGAATGGTTAGCCTAGGGAATGTAACTCAGAGTCAGAGCACATGCCTAGCaattgcctggcatgcacaaagccccaggttcaattcccagtaaagaaaggaaaagttagtAAGAATTATATATTCTTTCACTCTGATAATGAACCCATAGTGTAAACTTACTTTCATAATTTAATCTCTAAAACCtcaaacaatatttgcctttggGATACTGCCGAACTCTTCCACATAGTTAAAAAAGATCACAGTCCTAGCATATTCCTAttactgttatttctttaaagagactatctttcatCTTTAGATCTTATGAACAAAATGGTTATACATGCGTGAATATAT

a score=12125
s chr3           144508624 352 + 160039680 CATACACATGCTAACGGAAGAACATTAAAACCCCAAATAGAGGGGAAAAAAAACATTATCTGTGAAACATTATCATTCATTTCAACAATCATCCGTTTACCAAACTGCATCATGAGCAAA-TGCAATCATATTGAATAGATTATATGATTGTAAAATGATTCAATTAAGTTTTCCCTCTTGGTATAATTTGGCAAATGTGAATTTATGTAAATGTGTAATGATGCTTCACAGATACAAATTCTCTCACAGAAATGG----AAGGGACTTTAAAAACATCTTTTTTAGAACACCACATTTATTCAGTGTTAAGTGTCAATATAGTATTTTTTTTTAGTACTGTT-AGATACAGTGACAT
s HiC_scaffold_1 130726223 330 + 233722169 CACACATATACCCACTGAAGAACACTCTAAAACAAAATGTATAG----AACTGCATAATCTGGGGAAC-----TATCTATCTATACAAACATCAGTTTACCAAATTACCTcaagagaaaaatgcaattaTATTGA-----TTACATGATTGTGAGATGATT-----AAGTTTTC--TCTTGATATAATTTAGCAAATCTGAATTTATGTAAATGTGAAATGATGTTTTACAGGTAATATAATTCACACAGAAACAGGAATAGGGTGCTTGTTTAACATATTTCTTAAAACAACACATTTATAAATtgttaaatgttg-------atttttttaaaatattgttaagaTACAAGTACAT

a score=17352
s chr3           144554284 422 + 160039680 AGCATAAGAATTTATGTCCTTGAGTGCAATGGTGAGTGGTTTTTATTCGAGCCACTTTAATAAAATGAAGAAGCTATTAAAACACACCT-AAGATCATGTCAAGCCAGTCTTCCTAATTAGCTCTTCTATGGAAGAAACGATTAGCCTAACTTGGTGTTCTGCCAAGGATATACAATACACCAAGAACATCCCACATTTTATGAAAGACCTGAGCATGTTCCATTAAAAAGCATTAAAACTGCGCTGCAGTTGAAAATGCTGGAAATTGGAGGCAGCTTCTTAGCATCCGAATGCAGGGCATCCACAAGTG--TGGATCCTCTGATCAAGAGTCTCCGTGTCAAAGCTGACTGCAGAACCACTGTCC-----TCGCAGGTAAAGCA-GCAAGTGACAGCAGGGCTGAGGAAAGACTTTGCCCATGGTCTTT
s HiC_scaffold_1 130776330 418 + 233722169 agaaaagaaatttatgtccTGGAAGACAATGGTGAACAGTTTTTATTCTATCCTGTTTAACAAAATGAAGCAgcaattaaaatatactttaaaatcatgTCAAGCCAGTCTTTCTAATCAGCTTTTCTATGTAGAAAACAATTAAGCTAACTTGGTTTTCTGCCAAAGGTGTACAGTACACTGGGAACATCCAACGTTTTATGAG----TTGggtgtattttattaaaaaacattgTAATTTTGTTGAGATTTAAAATGCTGGCAACTAGAGGCAGTCTCTTAACATCCAAATACAAAATAACCTTGAGTTTCTGAGTCATTTG---AAGAATCTTACTATCAAA----ATTGCACAACTACTTTCCGTTTGGCACTGATAAAACATGAAACCAAACACAAGACTGa--aaaatttttatcaattttcttt

a score=7061
s chr3           144555842 458 + 160039680 AAAAAGCACCATCCCCGACACTATCATAATCACTTTTGATACACTCTATATTTGTCTAGAATTATGCCAC---AAGTGGAGCATCTGAGAACTATAATAATGTTTTCCTTAAGATAACCCATGTGTGTTTTCTGTATGTCCAGCATATCAGCTGCAATGGTCATTATACAGTACGCACATTAACGCACATTGGCTGTAGCTGGCACCACCATCTTCTATGATTTCCTACTCTACTACTGAGTATGGAATTAC--CATTACTAAAGGAAGGCAGAAACGTCATCTCTGAAGAAAACTAGTCACCTACCCATACCCTGCAATAAGCCACT-------CTCACAGAAAAAGCAGAAA----------CCCTCCCGACCCAAGTGCTTCACAGGCTAGTCTGAAAATCCCCATCTTGGATTCATCTGTGTCTAAGG----------AATCCATTTAGCTGGTTCCTGAGATCAGAATAAAACTGATAGCACTTA
s HiC_scaffold_1 130777924 437 + 233722169 aaaaaggacta-ctCTGATACTAT--TTATCATACCAAAAATTCAGTACCTTTAGGTAAAATTGTGTCATTCAAAGTCGAATATCTGAGAACTGTAACAATGTTTACCTTAAGGTAGACTAGGTACCTTTTCTGCACATGTAACATGTTGACT---------------------------------AAATTATCT----CTAGAACCACTGTCCCTTATGA--CCCTTTCCCACTACTTAGCTTGGAAAAACGGTATTACAGAAAGAATA-GGAAACG--AGCCACGGAAAAGAATGTACATCTATTCACACACAGCAAGAACACAATTAATTACCTCATCAAACAATCAGAAAAGCAGAACTTTCTTCTGGAGCCACATGGCACTGTTATAAGTCTGAAAG--CCCACTTTGGACTCAGCTGCATCTAAAGGGATGTAACAAATCC------TAGATCCTTAAAATCAATACAGAATTGGTAACagtca

a score=114197
s chr3           144566504 8200 + 160039680 [encoded data, 9742 characters]
s HiC_scaffold_1 130783610 8950 + 233722169 [encoded data, 9742 characters]

a score=19328
s chr3           144577032 784 + 160039680 caccatcacacatctggtaaatggtgga-gctgatacttaaaaccaaagtttggtttcTGGGGTCTCCTTTGACCCCCTGGTCCCATCCATTTTCCTACCCTCCTGCAGGGGTGTGTTTGCAGATAAGCTAATGCTTTCTATTGATCTATAGAAATAGGTACCAAGTTCTTACAGTAAGA-----ATT--TCTTCCTTATAAGAAAGTTCCTTTTTAGTAAGCTACTGGGTGCTAATAAGAGATGTGTAATACACATATCATTAAAATTATATTTTGTACTTTTATTGTTGATCCACATTTTCACTAAAGTAAAAGCTGTCGGGTCCAGTATTgtgacacatgcctgtaagcccaaccctgaactggacaggagaatcagggtgaggtcgtctccagcacagagcta--gttcagggccagcctggacctgataagactgtctcagaaagcaaaGCATCAACAATAAACCAAATAGATAAGTTCAAAAGTACCTAAGAGTTTGTCTCTT-TTAGGAAGATTTG-TGTAATCCTGGCCCTGT----TTCATTCCTGGTTTTCATTTTCAGGCGTCTGCTCTGGGGGCAGAGTTTGCGTCAGAGGCATGCAGAGAGTTGGGTTTCTCCAGCAACTTGCTCTGCAGCTCTTGCGATCTTCTTGGACAGTTTAATCTGCTCCCACTGGATCCTGTTTGCAGAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACCAAAAAGGTAATGTTTTTTTTCTGTATATTTCTC---ATAGTTGAGAT-AGGTAAAATACAGGCTGCTTAATCA
s HiC_scaffold_1 130798118 689 + 233722169 CAGTATCACTTGTCTTGTAAATGGTAGAAGCTAGTACCTCAGCCAAAAGTTTGATTTCTTATGTCCTCCTGCCTTCCCTCACTccacc--ttttcctctttccctg-aaAAATATGTCTGCAGCTAAG----TGTTATTCCATAATCAGTATAAACAGGTACTGAGTCcttaaaatgaaatgcagattattttttcttacaaggaaattattttttg--aaact--taTATGTTAATAAAAGAT---TCATATACATatcat-aaaatt----------ctttt---------------------taaactaaaagatgtc------atttttaagaaaa--------------------gaactgggagagagaa-----------------------aagaactaaagttcaaaaata-------cttaagaattttgTCTCCCAATGAAATGTTTCAGTAACTCATC------------TCTAGTGTAT-TAGACTCTCATCTCTTGTTTGGATGTTTTgacataaatataaaactatggggtttttttctcttttttatttttaggtgtctgctttcaaggcagagTTTTCATCAGAGGCATGCAGAGAGTTAGGCTTCTCTAGCAACTTGCTCTGCAGCTCTTGTGATCTCCTTGGACAGTTCAACCTACTTCAGCTGGATCCTGATTGCAGGGGATGCTGTCAGGAAGAAGCACAATTTGAAACGAAAAAGGTACTGTTCCTGATACATATGTTGTACTCAATTATTTAGATAAGACAAAGCATAAGTTGCTTAATCA

a score=15482
s chr3           144584505 1153 + 160039680 ccctccctcctctctcccGCCTTTCTCTCTTTCTC----TGTACTGACT--GTGACTTTGAG-CAGCACATTATTATCCCAGGTTCTTCAGTTT---TGTCATGATTATTTTTATATAC---------TCTCGCCTGAGAATGTGTATCTAATGTGTGTTCTCTACAC--TGTTGGTTTAGTCCTCAGAAAAAGCCTGTAATGCACTTGAAAAGTTTGACA--AACAAACAAACAAAACAAATTAGATCACAGGCTGCCCAAAAGTTGTAGGGCGTTTAGGTGCCAGAGCCAGACTCATCCATCCCAGTTTGACTGGCAATCCTAAAGTTTTAAACCAGAACACTGTTTGA--TGTCGTCTAGAAAATACTAATATTAAATCTTGCCACACAGAGCTTCTGTAAAAAGATTGAATGATTTAAACATGAAAGGCCAGATGCCCTTCTTA-AGGCCCCTGTTGAACCTTCAGTTAAGAAGACGAGTTAATGTAATGGCAGTTTCTGTTCCCTAAT------------------------CTCCATCTCTC--TTTACCACAGTGTG-ACTGACGCCTGTTACTTTTGATGGTTTTTCAAAACTATATTACCTGTCCTTACTTTAGCTAAGGTCCAAACAAAAGCTTTTAAATAAATGAG-----------------------------------------------------------------------------------------------------GTATTTTTTATTAATTTGGGAAGAAGTACATCAAAATA---ACTCTTAGGTTTATAAGGCAATTTCGCCATGCTG--------CAGAAGTCCATTTGAACAACATTGTCTAA----GTGGCA-AGTTTAAGTGCTGACCTGTCAGAGACACAGTGCCGCTACAGTGGAGAAAACAGAAGGCTGAAGAGGAAGCTAAGCTAACTGT--ATGACATTGTAATCTCTAAAGAAATTTCAT-GCTGCTTAAAATAGCTTCACTTTTCTACCATCCAGAGCCTC--CACTGAAACTGCCTTCTTCAAAGGAA------ACACAAGTATCTTTAGCAGATGATTCTCAGTGCTACATAAAAGCATTCTTCTGAAAGGAATTTTAAAATGGGAGCAATGCGTGGCAACAGTTCAGATTCCCTGTAACCAAAGTAAGGTAGTACTGACTAGTGGTGGCAACACTAATCAGTTCAGATCCGTGTAACCACTGCTCAAGAGGTACTGACTAATGGCACACACAGACACTTCATAA-----CAAGGGCTACTTATATCCCATAACTTATTACTATTTAAGAGGACTCTTCCA
s HiC_scaffold_1 130808613 1223 + 233722169 CCCTCTGTCTTTTTAGCAGTTTTTATTTCAGTCTCATTGTTTACTGACTTTGTGACTTTGAAATAGCAAATTATT---CTAGAATCGTTAGTTTGGATATCATAATTATATTGGTTTaccttttaatgttttattttacactgGTTACATGCTGAGTATTTTACTCATGATATTTGTTTAGTCCTGATAGCAAGCCTATAATA----TGAATACTTTATCCctgtttaacagaaaaaaaaaactagggtaTAATCTGTCCAAAAGT-ACATAGCAATTAGTCTCTAAG-------------ATTCTAG----------AGCCCCAAGTTTTTAAACATCTACACTATTTTTCTTGTCATATTGAAAATATCGATAGGAAGGCATACTTTCCAGAGATTCTATGAGAA-AGTGCATCAGTTATATGTAAAACACTGAACTTTCTTTGTGCAggtctcttttgcatttatagttAACAAGAT---------TAATGGCAATTCcatttttttaatagtttttacttaaaattattacATCTTTAGCTCTCAGCTTACCATAAACTACAATGGCTTCTAATACTTT--ATG-TTTCTCGGTAATATATT--------TGGCTTTATTTAAGGCTTAAACAAG---TCTTTAATAAGTGAgacagagccagggatttagctcagcggcataagcacctgtgttGCAAGCAcagagtcatgagttcaattctcagtaccacacacacccAAAAAAAAGGTGATGCAATGTTTCTTAATTCTG--ATaagta--tcaaaatatttaattttatacctgcatggaaattttgtatttttagactAATTCAGAAGTCAGCTTAAATAGCTTTATTCAAAACAGTTGCAGATTTTAAGCTTTGCCCTGTCAGAAACAGAATGCTACTGCTGTGCAAAACACCGAAGGATGAAATGGAGGTTAAGCTAACTGTGCGTGAAATTGTAGTAT-TAAAGAAATTTCACAATTGCTTAAAATAGCTTCCGTTTAGTAGTGTCTGTAACAGCAATATAAGAACttatttcttcaaaggaaacaaatacataaatacctGTAACAGATTATTCTAATTG---TATAAAAACACTCACAAAGAAGGGTTTTTTGGATATGA-----GTTTGGCAACAGTTCAAATTCAGTATATC---ACTAAGGCACT--TGAATAGC--------------------------------ACCAATGCTAA----------ATTAATGACACAAATATTTACTTTATAATACAGTAACGGCTACTAACATTCATTAAGTTGTCA-TACATAAAGCCACTCTTCCA

a score=4749
s chr3           144586824 127 + 160039680 AGATGCTTCTCTCCAGTGAATCAAGCGTTACGTTCTAGAACTTCTGCAGTGG---AAATTCCA-----AGACATT-CCTTAGGCCTCAGCTTGAAATCAACCACTTCAGCAAACTGCTCGTCTTGATTCAGAGCCA
s HiC_scaffold_1 164495053 136 + 233722169 AGTTGTTTCTCTCTAATGATTTGACTGTAAcatttctgaatttctgaaatggccaacagaccatagaaagatacCACCTTAGACTCCTGCTTGAAACCAGTGACTTCAGAAAACTACTGGCCTTGACTCAGGGCCA

a score=16498
s chr3           144590564 889 + 160039680 CCATGACGACTTTCCAATTTGTAACCTTCCTGGTTTCCATTTTACAGCTGTATGCAGGAGCCATCCTTGAAGTCTGCGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGGTATGTAG---------CAATCATTTACAGTCATCATTT-ATAAGAATAATTTTACTAAATATTCCCAGGAATATGGATTTTCAGGAC-ATACTCTGTAACAGTATATATGAATGTTTTCCAATTCTTTTTTCAGGAGGTAGAGTCT-TAGTAGGAATTGATACACACACTTTATTTGTTATAAACAAATACAACATATGAAAGTTAGATGTAAAATAAAGAGCA-TGAAATCATTCTTTT-------ACTCCTGTTGGGTATAAATTTTAGGAAGGCTTTTCTTGTAGCAGATAGAA--------GTAGAATTCC----TCTAGCACATTCTA-----------------ATAGACTTCTTTACTGTCAGTTACA--GAACATTGACCTAAGGCCTATGTAGCTTGACAAGCTACAAGAAGAGAATTAATTAACACAGAATTTAG--------------AGTCATGCAATGTGTGTCATCACAGGGAATTTTAGTGATAATTATGTTTAAAAGGTAATTCTCAAAATCTGATCTTGCAGTTAGCCATCAAACCGTGATGGAGCCTCAGGTCTCCAGGAAGCCTGCCTTCACTAAGGGTTTCCTCT-TATCCTTGCATGCTTGCCTTGAGAGTCAGCTTTATGA-----TGTGcagggatggtggtacttgaattga------ctcttaccacttg-aaaagcagaaccaggaaggtcactgtgagttcaaggccaccctggtctacaaaagtgagttctaggacagccaaaactacctgttgagaccatgtttcaaacacacaaCAAACACACACACACAGAGGAACAAAAGAAAATCAGGCTTATGAAATGGAA
s HiC_scaffold_1 130822680 858 + 233722169 ccatgatg-----cCAAgttttttaattctcatttttccttttgtagctATATGCAGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAAGGTAAGTAGTAAACTGTTCAAtcatttaaaaacagcatttcacAATAATAGTTCCATTAA--GTTccaaagaatataaatttttagGACTGTACTTTGT--CAGT---Tatacatgattt----ttcttttttatggaaataaattttatagta-------------aCTATTAGGTTATTGTAAGTAAAGACAAcatatgaaatttatatttaaaatataacatattgAAGTGGTTTTCCTTAAGTAACCTTTTTTTGGA---AAAGTATAAGATAACCTTTCCTTTACtagatataatttttaacatagcatTCTATTgtgtataacattttaaatatgagtTGATTTTCACAAAACTCTTAAGGAACAGTTGCATTGAATATAGA-CTAACAATAATGACAGATGAC------CAAGAAGAGAATTAATTACAGTAGAATTTGGTATAAACAAGACAATATCATAGTACATACACCTTCACAGGaaattttaaaggtaaataaG-TTAAAGGATAATTGTGAAAATATGATTTTCTAATGTAACATCAAACAGTGATGGAGCTTTGG---------------------ACTAAGGCTTTCTGGTGTATCCATCTGTG--TCACTTGAAAATCAGTGTTATCAGCATGTTTCCAAGGGCTGTGGCTGGTGTAGCCATGGGATCTCCAACTGCATGCGAGAGC--AACCTGGAGAGACTTTGACAGCTCAGGTCAACCC---------------------------------AATACCTGTGGCTGCCACTCACCTTtcctataaggaa-----------aaaaaaaaaaaagaaaatcaatgttaTGAAATTGAA

a score=8237
s chr3           144594687 268 + 160039680 GAGCTTTGCCGTCATTCTGTCAAGCCCACAAACTGCCATTGAGATTTGGGCTGCTGGTTAATTTGAAA---CAGTGTCTTAAA-TGTTTAG--------------ATAGGG-ATGCCTCTACATCTATT---ATCT---------CTGTTTAAATTCCCTTG-------GTTTTCAAGTAGACATGTTTGCTTTA--TTTCATAGCAAGCTTGGATTTAGACATGACCCATTTGTAT-ATTTTTCTCTTTTAAGCTTTTGTCAGAAGTGATAAACCCAAACTCTTCAGAGGTCTACAGATCAAGGTAAG
s HiC_scaffold_1 130829813 302 + 233722169 GAGGTGTGCTATCAGTTTATTAAGCTCTAAAACTCCTGTTAGAATTTGG-CGTTTGACTAATTTGAAAAATCAGTGTCTTAAAATATTTAGTCTTCTTGTCAAAGATATGATGTGTGTctccatttatttcaatttattagttacctgtttaaatttatttgtatttacgTTTCTACCTA---CTGTTAGTATTGGCTTTTTTAGCTAGCTTGAATTTGGATGTAAAcagtttaaatcatttttctttt---agcttttgtcAGAAGTGATAAGCCCAAACTGTTCAAAGGACTGCAAATCAAGGTAAG

a score=60447
s chr3           144596499 2168 + 160039680 TTATTGTAATACATTGTTCTGTATTGTCTGTCACTGCCGTTAAGTTTA---------CTGGAACTGAGAGAGCC---------------------ATATCCAACAATGGGCCTTAAGTCAGCTTAAATCTTCCCTGTACCAGCACATGCTCTTCTCTCTGAA---GTAACATGGCGTTTTCTTCATTGTTGTCCTTTATGAAATCACATTTGGGTCTTTGCTGAAA-----------AAGACTGTTGACTGTAATATGTGTAAAAACTTAAATTATTAGC-ACAATTAATCTAGTATTTTGATCTTGGGTAAGAGTGAAAATCCTCGTTCTAAGCAGACAGTGATGTTGCTATCTCTGGTCTTTGTAGTATGTTCGAGGCTCAGACCCTGTACTAAAGCTTTTGGACGACAACGGGAACATTGCTGAAGAACTAAGCATCCTCAAGTGGAACACAGACAGTGTGGAAGAGTTCCTGAGCGAGAAGTTGGAACGCATATAAA-CATGCTTAGTAGTTT--------TTATACTAATCAAATGAATTATCACAGCACCTAGACAATAACTTAGTTTTGCATGCTTACATTGGTCATCCTTTTTATGTACATCATTAATCTTCTGACAAGAAGCTGAAGTAGCACCACAGTCCATAATATATCAGGATCTGGCAAGCTTAA-GGAACCCAGCTCTTAG-AAATTTCTCTTCTTCTACACTTGTTGCTCTCACCAGTGAAA-CGCTTTGTAAGGAGGCATCTGGGTAATTATGCAAATA--AGTTTGTGATAATTGCTCCAGTTCTACAAACAACAGAATTTTAAA-TAGAGGAAGTGGATAAAGGAGACACCTCCCTTGCTG------TGTGCTCTTTGAAAGTAATTGACAGAAAACTACAAA-CACGTAGGATGCCCTGCGCCTCAGCAGCA-----CCCACCCC--AGAGCCTC--------TTGGCATGCCCAGCTTTCTTTTCAGTACAAGTATT---TGTAGTTTGTAATGAATGTGCCACATACAGGTTTTGTAGCTTA-TTATTATGGAACAGACTGAAGATCTGCAGTACGAATTTAATACTTATAAAGGTTTGCATTAATGAGGATTACACAGAAAACCTTTGTTAAGGACTTGTGTAGATCTGATAATTGGCAAATTTTTATTTTAAAAGTATTCTTACAGAAGAGTTCCATTTAAGAATGTTCACTTATAGGACCAAAATATAAATAAAAACTTTCAAATATGTT--TGATTTTAAATTAGTCTGCTTTGTCCTTTCGTGTTTCTTGATA--TGT----TCTTCATTTTCA----TACAAGCTCTTTTTTAAGCCAAAATACAAAAATG-GCTGTACT--------GTTTGGAACTTA-ATACCGTCTGTTATAAGCAGAGGTTGGTTGTTAATTATCAGCTGTCCTTTGTCCTGTGACATCTAAAATCAAGTC--TTTATAAAGTCAGTAAGAGAGT-GCATATAAACCTGCATGATTACGCTCCTGAGAAGAGAGTAAGAAATTCTGGCAG--AAGCCGC-TCCT--TTTGATCAGT-GCGGTAATGCCGAGGGCGG-----CGCTTTGACAGCTCCAGTC-CTGGTGAATGTGCCCTC--TCCTCGGTGGTTATTGCTATTTTAGAACAAGAGGGAGATTAAGCCGGTTGTGGACAG----------AGACTTTGCCACCACAGACAGAAGAATAGAGGTATTGAAGAATGAAACTTCAAAAAAGAACGTCTGGCATTGACATAGAAAATAAATTGGACTGGTTTCCGGGCAGGAAGAGCCAGTTAAATGAATATCTGACTGGGCAAGGGCCGAGGGGGGAGAATTGCTGAAAAGAGGCCTGAGAAGTCTGTTGTCTTCAAGTGTA----GAAAGATCACAGAAGCTGAA----CCCACAGTAT--CTGAGCTTCAAGCCTCCCAGGAGCTGTGGCTGATGGGTATCTGCTTAGTCCTAC-ATGGTAATTACAAGTTTCAAGTT---GGCCAGTTCAAAGTGGGTTTGGCCAGTTAAAATCAAGGAATGGCTTTTTTAAGAAAGAAA------CTGATTAC----TAAGGAGTTTGTATTCTA----AAAAGCACCGTTTTATAGCCAGTTCCTGGTGTGTGGTTGAGCTTATTCAAGTTCACA------------------------GATATTTGTGACTC--TTCTCCCTGTTAAAATTTTGTTACTGCTAAC-------------TTTAACTG------TTTTGTTATCTCCC----------CAAATTAGGCAGAGATTTTTAATAAGGACCTCTGAGCAAGATCTGCCTTATCCTGTTGAGAAGATTGGA-GCTGAAAGGCGATTCTAAA
s HiC_scaffold_1 130833765 2261 + 233722169 TTATTCTATCTCATTATTTTG----GTCTGCCTCTACCATCAGATTTTTTGACTCATCTGAGTTTGAGAGAATCTTGcaataataaatattcattacaCTCAATAATAAGCCCCAAATAA-----AATATCCATGATACCAAtggatgtttttctctttaaaagtgaaaaat----ttttacttatt-------tttattaaatcataCATAATTATTTCCTGAAAGACTTCCTTTTAAGACTTATTGTGATACTGTATCTATTACATTTAATAATCTGTTACGATTGTC----TGTTTTGATTGTCTGTGAGACTGAGAAGGCTCTTTCTAAGCAGAAGAAAGTGATGGTGTCCTTCTTTTTTGTAGTATGTTCGTGGTTCAGACCCTGTGCTAAAGCTTTTGGACGACAGTGGGAACATTGCTGAAGAACTAAGCATCCTGAAATGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAATTGGAACGCATATAAATCTTCCTTAATGTTTTGTCCTGTCTTTTTGTTATCAAATGAAATATTACACCACCTAGAAAATAATTTAGTTCTGCTTGCTTCCATTAATCAGTCTTTTACTGTGAGGCATTAAACATCTAATTAAAAACTGAAGTGGCAATACAGTCCATAACATCTTAGGAGTTGACAAGACtaacaaaattcattttttaataaatttc---tgttgtgcATTTGTTGATACCACTAACAAAAGTGCTTTGTAA-CAGTTTTATGGTTAATTATGCAAGTGATAGTTTTTGATCATTGGTCCAGTCTTACAAACAACagagttttaaattaattttggttAATAAAGGAGATTATTTGGGTACTGAAATAATCTGTCTTCtgcaattaa-tgacagaaaactaCAAATCAAATAAGACATACTAAGCCTCAACAACAGATTGCCTGCTCCTTAGAACCTCTCCTATTTTTGtattgcctgattttctttttaatggaaatattatgTATAGTTTATAATAGTTGTACTGCATA-AAACTTTGTAGCTTCTTTATTATGAAAT--ATTGAAAGTC-----TAAGAATGAAATGGCCACAAAAACTTGCATTAATGAGGACTATACAGAAAACCTTC-CTAAGGATTTGTATAGATCTGATGTAtggcaaatttttgtttttacattcttACCAAAAAATAGTcatgtttaaaaa---ttacttata-aaccaaaatataaataaaaacttccaAAAATCTTTCTGAATTGAAATTAATGTGTTTCATActttaatgtttcaaaatgattgtggtatttttatttacaGTGTTTTAAAGTCTTTTGGGGGGGGCAACTGGATCTTGTTTTGTGCTCCAGGCCGGCCTGGAACTCAccttcctcctgtctcaacctgtagtatgctg-agatta-caggcatgcacagccACTCCCAACTTAAAATTAAGTCTATTTTTAAAGCCAGCAAGAGAACAGTTAATAGATCTGTGT--------------------AATAAGAAATTCTGGCAAACAAATTGTGTTCTGCTTTGATCATTGGTCGCAGTG----GGGTGGCCTCTCATTTTGATAGTACAAGGCTCTGGTTAATGCGCCACTAATTCCTAGTGGTTACTgctacttcaaaacaagaaggagATTAAGCCAACTGTGGACAGTGGAAAAAACAGGAATTGCCACCACATACAGAAGAATAGTGGTATTGAaggataaaacttcaa-----aacatctGAGATCCACATAGAAAATTAATTGGCCTGGTTTCTGAACAGAAAGAGCCAGTTAAAT--------------------------------------CTGACACGGGGTTTG---AGTCTATTGTATTCAAGT-TATTATGAGAGATCAAAGAGACTGAAGACCCCTGCAGTATTGCAGAGCTTAAAG--TTGTAAAGTCTGTGAATGAAAGGGGTCTGCCAGACCCCGCTGTTTTAATTGGGTGGTTCAAGTTAACAGCCAGTTCCAAGTGTTTTTTGCCAATTGCAATCAAAGAGCAGCTTTT-----AAAGAAACAGCTGCTAATTACAAAGAAAGGGGTATAAATACTGATCCAAAAGTACCATTGTATAGTCATATTCTGATATCTGATTAAGCTTATTCAAATTCACAAACAAGGATCTGTAGTTGGAATTTGATATTTATGGCTTAGCTTTCCCTGCC-AAATTATGTTACTAATAACCTAAAACAGTTAATTTAcctatacattttttttaatttacctaTACATTTGTAAATTTAGCAAAAGCCTTTTGTAAGGAACTTTGAGCAGGAACTGTCATATC---TTAAGAGGATTTGAGGCTTAAAATCCATTCTAAA

a score=34598
s chr3           144603741 1550 + 160039680 CCAGATCAGTCCACTTGTTAGGCACTCTGATGACGCAAGAAGGAACA-GAAATCATCTTTCAGAGATCTGATGTAAGCAAAGCAACCTAATCAGCTATGAACTGCTAAAGAAACTCTAAAGAGAGTAAACTACTAAAGAGAGTAACATGAATACCTCTGAAGCTCAGTACAAGGCCCTC--AGCCTTAGAGCAGAGCAAGTGTTGTGGGACACTCACTAAC---CCTTGCACAAGTCAGTAACTGTGCTTGTCTGGTCACTTTTTCTGTAATTCCTATCAATGAGCATT---TTCAGGA-TACAAT---CTACATGTAGCAATTGAACATCTCTTCTAatgtatcaacttggctaggctacagtacctactttcttca--------aacattagaagtagccactgaggtcctttctggatgtgattagcatttataa--aatgacctctgtaatgtagggaatgaccttaagaat----------gcttgatagccttagaacaaaggtgaaggcttctttctctacacagacagaattctgtgttaagtctgca-----gcattcctg----ggtttctagactactagtctcctctgtaaatacctgacttaagacagcaa----------------------------------------------------------tattgttctgcta-----------------------------------ggctgccctgct-tgcagtagacttcagacgtcccgacccctccagctacatgagtcagttccttaaaatag----aaaagaagtccatagaatttacata-----atatgtcccattgtttctggttctccagaggatactgactCACGCCTGCCACGTTATGCCG------ATGGACTAGCCTTCAAGTACAAGGGTTTACAGAGAAAAGCACAGCGCACATCTAAACTATTACAGTAGGTTCCGTGTGCAGTCTGTGTTCCAAGATTGGCCATCTGTGAC-------------TTCA---GCTCTTCCTCAAAGCCACCTACCCAAGGTATCTT-ACCA---CGTTTGTGTTTTCCTCATTAGGAATAACACATGGGGTTGTGTTTATGTTTGGCTGCACATAGAATGT--TCTGACAGCTAATTAGAAGACAATCACTGAACACT--TTACAAGGGA-AGGCAACAGATTATTTTTTAAAAG----GAAGTCATCTTTTGTTTGAAAACAGTAATGT-------------------CAGTTGGCTCAGAAGTTTCTGTAAGTCGCACAGTGGT-TGTAAAATATGTCTTCTGGTTGATTTGCAAACAGACATGGAAAAGTTACTGGGTAATAAATGAGCctt-----------ttcttttcttttttttttttttGAATTAAAGTAATTTT-TTCAACAGAGTTATTG---TGTTAGAACAGAAGGAAGTGATAGATGTAACGTGTCTTCAGTGTAGCTAGGTATTTTATTCTGCCTGACATTACAGAGTTAGTAAACTAGGGGAAAAAAAAAAAAAACCAAACCCATGATCTAACACCTCGGTTCTTATGTAGACACATTTGAGAATGCTGGGAAATTTGTTCTCAGTAACTTTCACTAGATCACTATCAACATA-AACCAAGCAAGTGGTACCTCCAGGCCTCCATTATGACGTGGCTGTGGCTAGAGTC------------------AGCC-AGGAGGAGAGATGAGGATGTCAGCCATGAAGAATTGTTATACTTACTCATTTCCCC
s HiC_scaffold_1 130839715 1676 + 233722169 CCTGGTCTGTTCATTAGTAAGGCATTCCAGTGATTTAACCAGGAACAAGAACTTGCCTCCTAGATTTGTAATTGTAGCAAAGCAATTTGA---GATTTGCACTGCTACAATAATTTTCATT--------------------GCAACAAGAGGATATCT-AGGTTTAACACAAAACCTTCTTGACTTTAAAGT---GCAACTGATATAAGATACCTGTCCACTTTCCCTGTACAAGACACTGACG----------------------TGTAATTGCTATAAATGAACAATATATTCATGAGTACAATGATTTGTTTTAAATAGTCGAGCGTGTCTT-------------TTGGTTAGGCTCTTCTACCCAGCTACTTGGTCAAGAACAAGACTAGACATTGCTGTGAAACCAATTTTTAGATTTGGTTAGCATTtgtaattaataaattttaaaacctacACAATGAAAATAGGTCTCATTCAACTAAGTTGaagactttaaaaacaaagacaag-----ttTCCCACAGTAGAGGGAATTCTATACTAAGGCTGCAATGCAGTATCCCTATCTTAGTTTCCAGCCTGCTGACTTTCCCTAGGGATATCTGACTCAAAACtgcaaataaccagtgatgtagctcagtgccaccatgcctgcctggcaagcacaaggtcctgagtttgattctgctacaaaaaaaaaaaaccaaccattGCCTGAATTTCTAGCCTGCCCTACTGTACTACAGATTCTAGATTTCACAGCTCCTACAGTTGTATGAGATAGATgcttaaaataagagaaaaaaaaatccttagacTTTATTTAGGCAAAGAGATGCTGTTGGTTCTATTTCTCTGGGGAATATTAATTCACCTCT--CACAATATTCTGTGCATTAATGATTAACTTTCATTTATAAAGCTTTGCA-AGAAAAGATCACCACAAGTCTAGAATAA-ATTGTATGCTCCATATTCAACCTACATTTTAAGACTA-TCATCTGTGATATTGAACAGAACTTTCACAGATTCCTCCTCAGAGCCATTTATCCAAAGTGCCTTTACCAAAGTGGTGGTGTTTTCTTCATTAGCAGTAACATATGGGACTGGGTGTATGTTTGGCTGTACATAGGATATATCATCAAAGCACATTA--AGTGAGTCACTTAACATTGTttacaaagaagatttaacagatg------taaaagaaaagaaaaaatcttttgaaTATAAACAATGATGCTGATAGATTCAACAACCAACATTAGTTTCAGAACTTTCTGAAAAgcaaacaataatgcaaaaaatatGTTCTGTATTTGATTTGCAACCAGAAGTGAAAAGGTTACTGAATAATAAACTAGCTCTGGAAGAAATACCTCTTGTC--------------AAATTAATGTAATCTTATTCGATAGAGTTATTGGTCTGCTAGAACAGGAAGAAGTGATAGATGTAATCTGTCTTCAATGTAGCTAGGTATTATATCCTGTCTGATATTACATAGATATT-------tgtaaagcagaaaaaa--------tacAATCTAACACCTCAGTTCTTAAGTGGGTACATTTGAGAATGCTGAAGGATTTGTTCTCAGTGACTTTCAATACATCACTATCAAcatagaacaaagcaaatggcATCTTTGGGTTTTCATTATAACTCGACTGTTGCTGGAATCATGGTATTTCCAATGAGTAGCCAaggtggagaaaaaagaatttcaacaACTGGGGATTCTCTCACTCTGTCATTTTTCC

a score=20409
s chr3           144623040 1750 + 160039680 tGGctcacctcttggtgccaccacactgaggattagatttcaacaga----------------acaaccactcagaccctagcaGTTACACCGGCAGAAAAACGAAGTATCTCTGAGCTT-------------------TGTGACAAGAGAGCTGCCACTGTATCTGGCAGCCTGCTTCCAGGCTGGCCTCATGGCTCCTGCGCTAACATGTTTTTTTCTTTTTTCTAATAGGTATAATTATTTGGCCCCAATTGCTAGCAGCAAATGTCAA---CACTCGTCTACTGCCTTCCTCCACTCCGAAACCCCCTCATACC--------ATCGAGTCCTAATGCATGTGTGCTTTCTTCAAATGAAAGGCAT-GCTTTCAGGACCTGATGGAAAGGAACAGCTGGACCCTTTCAGAGGATCCATTAGGAAGTGATGGAGCGCTCGGTAGTGCAGCTG-CTGCTAGGA-TGAAAGTGTTTGCTCAGCACAAAGGGCTCCAA------GCACAAACCTCCACCAGCCTTCCCCTCCCTCCGAAACCCTG--TCTGCAGAGTCACAGCGCTTCTAAGGGAAAGAGTC----AAGGTGCCGCTTTTT----GTTCTGCCTACTGGAGTCGTGGCACCTGGCTGGC--------CAAGCCTTCATAAGTAGCAGTGGC-CAGAGCCTCTCTGCTTCTCACTAGATCCTGTGAAGAGGCCCAGAGTG----------------------------------------------------------------------------------------------------------------------ATTGCTACAGGACC-----CAGCTTTCTTAACCAGGGACCTCCAGCTTCAGCCACGGCTAT----CCCTGTAGCTCCATGATGGGAAAGAGGTGTGGAATCTCAGAAGAGCT----GTTTCTGACTCCTAGAAAAGGCACTGAACTGACTCCCTCTTTTGTATCCACCTCATCCTCAG---------CTGG-----TTTTTCTTTCCAACCCTCTGGAAATAATCTAGAACCATTTTAATGAAAATATCATTGCCCAGGAACCACCACCAAAGATTTAGATTCAAGTTTACGTGGTCAGGTGGTCCATTCAAAGGCATCCTGGTGAGCCCTCTGTGCAGCCA--GAGCCCACCAGTCCATCC---TCTGTGCAGCTGGAGCCCACCATCCCTACTCTCTATGAGTTCAGAGCCCACC-----ATACCCTGGTTTC--ATCCAGGGTCACACCAGAAGCACCTATGGATCT-TCTAAGATCTTATTGCCTGCGTACTGGACAGAGAAGAAACGTCGTCACCACCTGGAGTGTTGCCCAGGGGCTTTTAAAAAACAAAGCAAAACACTCTTCAGTTGATTTTAAATGGGCCACCAAAagcctgctatggtggtgctctcctgtaattccagagctaggaaggctgcagcaaaaagatcaggagtttgaagactgatcttagctaaatagtaagaccttgtgtcaaCCACCAAAAAGAATGATTAAatggatggatggatggatggatggatggatgACTTGGTAACCCCACCCCCACCCCCCAGCCATGAACTATCACATTTTTAAAGCATCTTC-CAGGTGATGCCTTTTAAACTTCTTAT-----------------AGTGCttttttt------------------------------tttttttttttttttttttgagacagggtttctc--tgtagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactca----gaaatccgact---gcctc-----tgctgggattaaaggcatg---tgccacgcctggctCTGACtttcttctttttaatcattcatgatttactgaccaagacttttataaaatacaat----tagtgtcaccaggaaaacgtgataacaaagcagacctacaaaatacaaatgtagatattttcattattagattcaaagaca-----------------caagattGACATGAAA
s HiC_scaffold_1 130854175 1811 + 233722169 TGTCCCACTTCTTCACACCAAGACAATGGGGCTTAGATTTCAGCAGGTGCATTTTGGAAAGACACAAATATTTAGACCTTAGtggccaatttagcaagacaGTGGGGTATTGCAGAGCTTATTTTGGCCATGCCAGCAGCGTGGCAACAAAATTGG---TGTTTTTAGG----TGCTTTCAAGCCTGTCCCATCTCTCTCctagaagcat-----------tttaaaaatagctgtaaTTTTTTGCCCCCGACTTCTGCCAGTAAATGTCAAAGTCAATC-TTTACtggctcccttcttccc----tctcttttttcctggTAGACATCAAGTCCTAATGCATTTGTGCTTGGCACAAATAAAAGGCATCTTTTTCAGTGGTTGATGGAAATAAACAGCTGGAGTCTTTCAGAGGACGCATTAGGAGGTGATGGAACAAGCTGAAACACAGCTGCCCGCAAGGACTGAAAGTGGCTGCTCGGCACAAAGGGCTACAATTTCAGGCACAAAGAGCCA-GACTTTTTCCCTAACCCAAAAAACCTGCCTCTCGGGGGTTTGCATGGGTCCAGTAGAAAGAAACCTGTATGATGCTGCCTTCCCAGAGTTACACCACCAG-----GTAGGAGCTGGAAGGCGACTCGAGCAGGAGCTCATaggttgcttttttaaaaagccttttggCCTCACATTGTTTCCTGTG-TGAGGTCCAGAATGTCCCTGACCCCACCCACCTACTCGGCATCCCAGCCATTCCTCCACCACAGCATGTGCAGCTAATCCCCTCCCCAAGAGTGTTCAGCTGCTCTGCTACCCCAACATCTTCAGTTGCTCTCCTGCCACAACACCCTAAGCTACTCCCCCACCCTGACATCCCCAGCTGCAGCCATGGCTGCCTGGCCCTGTAGACACACAAaaggcaaaagatttgaaatctcAAACTACCCCCAGACTCCAGGTTCCTGGAGAAAGCAGGAAACTGACCTCCCTGCCTTCAGATGCTCCATCTACAGTGAGACTCCCTGGAGTCATTGTTCCTTGGCTCCCTTTGG-AATGATCTCAAGCCACTTTCATTAAGATATCAGTGCCTGGAAATCACTGCC--AGACTCA---TCTAATTGGATTAGGCATG-AGTCCATTTAAAAGAGTCCT-GCAATGCCTTTGCACA-CCATTGAGC-------TTCATCCAGGTGTGTAAGGGTGAAACCAA--------AATCACCAGGACTTTAAACTCTCCCTGCAGACACAGTGGTTCTCAGTCTCGGCACACATCAGAGGCACTTGTGGATCTCTCTAAAATCCCCGTGTCAG---------------------------------------GCTGCCCCCGAGA---TGAATTACA--------------TCAGTATCTCTGGAATGGTCCTCCaga--tctgt-------atatattttttaaactcc---------------------------tCAGGTGTT--------------------------------------------------GAATGATTGAGT-------------------------------TTGAG-------------------AGCTGTAAGCTAGTGTGCTTCCACAGTATCTTCTCAGATGATGCCTCTTAAACTCCTTGTAGGGGAGGACTGGCTTCAGGGCTTTCTTTCATGCACACGTGCGCGCAcacgtgtctgtgtgtgtgtgtgtgcttgtttgaggcagggtttcaccatgtagtttagattggccttgaactcactttgtagccgaggctggctttgaactaacagtgaactcctgcctcagcctcccgagtgctgggactacaggggtgcaccaccacacctggctctg-------taTTTTTAAGTGTGAAGCTCTTGCTGACCAACACCTTTGTAAAGTATAATAATATTAAATCActagaaaaatgagataa-aaagtaGATATACAAAATACAAACCCaagtgtgtgttttgtt---ttttgagacagtatcttactttgtagcccagagtggCATGAAA

a score=31727
s chr3           144625309 703 + 160039680 ttttaccaataTATAAATCCTATATTTTCCTCAAAGAGCT-CAAATTGTACTTGTGAT-CAGGATCTTGTTTCTGGAGCCAGGAAACT--GAGGTCTCACTCGTCAGCCTGCTGCATGGTCCCCTTCTCAGACATAGAGATGCCC-TCCTTAAACTTTCTGATATTCTTGTTTTTAACTGTTGTAGCTTGCTGAATAAGAGCCCCTGAATCTGAAACAAGTTCAATATCATTTCCTTCAAGGATTAATTCATCCTTCTGAGCTTGA----CAGAACAAGCAACACCTGTCCTCATCCGAACCCTGCGGATGGATTTCTCACCCAAGAAATTTCGGCTTTCACCCAAGGACCCATTCTCCTGGATAACGACGTTGATGGAGAAGTGAGCATACACAGACCTCATCTTGTAACGGAAGCCCAGTGTAACAGCCTTGATCATGTTCTGAACATGACTGCAGATGGTTCTGACAGTGGCCAGTTCCTTTCTGTTACCACACCATTTGTCAACTCGGAGCCTTTTCTTTTT-CTTTCCAGAAGACTCAGCTCTACATTGATGTGATTGAAGTCCCTCTGCAGAGTTCCCCTGAGG-------------CTGTGTGCCCTTTCAGAGTGATGTCGACATCTTCTGGAATGTCGACAGTCTGATTTCAGAGAATGTTCTTCATTCTCACAGTAGATGGGGCAAAGAGAGAATGTCCTTTCCAGGGAAGGTTTT
s HiC_scaffold_1  58354782 717 + 233722169 ttttccaaatcaATAAAGATTATTATCTCATTAAAATATTACAGATCGGTCTTACAATTCAGAAGCTTCTTCCTGTGGCTGGATAACTCTAGGATCTTAATTATCTGGCTGCCAAACTGTTTGCTTTTCAGAAACACAGACACCCATCCAAAAATTTTCTTACATCCTTATTTTTGGCTGTTGTGGCTTGCTGAATCAAAGCAGCTGAATTTGAAACAAGTTCAATGTCATTTCCTTCAAATATTGGTTCAAACTTTCGGGCTTGAGATGCTGAGCTAGCAGCATCTGCCCTCATACGAACCTGGCAAATGCATCTTTCACCCAAGAAGGTCCAGATTGTGACAAAAGACCCACCATCCTGAATAACAGCACTGATGGGGAAGTGAGCACACGCAGACCTCGTCTTGTAATGGAAGCCCCCCATAACCCCCTTGATCATGTTCTGTACACTACTTCACATCATGCAAATGGTAGTCAGTTCCTTTCTGTTTCCCCACCATTTGTCAACCTGGAgcctcttctttttgttttcaagaagACTGAGCTCTAAACTGATGTGGTTAAAGTTGCTCCACAGGGCTCCTCTGGGGCCCCTTGCAGTAACTGTGTGCCCTTGCA-AGTGGTGTCAACATTTTCTGGAAGGCCAGCAGTCTGATTGCTGAGAATGATCTGCATGCTTGTGGGAGATGCGGCAGAGAGAGCA-GCCTTTT-------AGGTTTT

a score=11889
s chr3           144626033 402 + 160039680 TGTCAGTTTGTGAACGTATGTTGGTCTGTGGCCTCTTCTTAGAGTAACACTGTTCTGAGAAACACTTGTATAAGAAATATAAATATATGTGTGTGCTTCCGGTGTGATTGTGTGCAGTGTCAAATAGAATCAATAAATACAGAGGGATGAAGCCCCAGGTAGG--TAAAGGTTTCCAGGCTATTAATGGCTATGATAGGTTCTGAAGCAACAAAAACTGCTTCGCTCCATTTAAGTCTCTACTTTCTAATCTTGTAAGGTGGAGAAGTCTTCCTCCCTTAGAATCCTATTGACCCTTCTATAATGGGTAATC---TTACCAATTTATTCTCAGTCTCATGAAGCA------CTCGCCGACCAGAAAGACACATCTCTGCAGAGTGTCCCCTTGTTCTGTCCTTAGTACCCAGC
s HiC_scaffold_1 130856133 408 + 233722169 TGTTAATCTGTGGACCCGTGTTGGTATGTGAGCCATGCTTAGggtaaaaccatttaaaaacacatttttacagGAAATATAAGTACATGAGTGTGGTTTTGCTATAACAG-ATG-AGGGTCAAGCGGATTTGATAAATCTTGCAGAATATCTGCCCAGCTTGACATAAAGGACTCTAGGCTTTTAAGAGCTCTGAGATGTTCTGAAGTAACAAAACCCATTTAGCTTTATTTAATTCCGTGTTTTCCACTCTTGTAACACCAGAATACTGCCCTCCACTCAAACTCTATAAGCACTTATATAAGGTGTAATCTGGTTAACAATTCATTA-CAGTCTTATGACTCATGCTCTCTCAACAAAAAGAGAGATGGATCTTTGCAAAATCACGTCCTGCACTGCCCT--ATGCCCAGC

a score=7558
s chr3           144637008 454 + 160039680 GTCAATTTCCAAAGTCTCTTC-----CTGCGGTTCTCTGACCCTCTTGTCAACAACGCCCATTTAGGCTTGGACACCTCACATGACTTTAAAGGCTCGTTCCATGTGAGCCAGCAGG------GAGCCTAAC------ACTTTGATTCCACATAGACTC-------ACTGCACATGCACACAC-TACC-ATAGCAACTGACTCAGTGGTTATTCGGCACATTATTTTAGGGGGA-------------------------------------------------------------------GACACAGGA------------ATTTGC--------------------------TAAGG--------------------------------ATATTAAAACAGAAATGTGCTCTCTATCCTGCTAGAAATCACACAGGAAGAAAGGCCTGGATTTCTCTTGGCAGATACTTT---GGGTCTGCTTTTACAGAAGCCATCTTTAGGAGAAAAACAGAGATGGGAAAAAGAAAAGAAACGGGGACTCTGATGGTATTGTCGAGTCATGACTCAAGTCTTACCGGAA---------AGCTTTGGACCTTTCAGCATAAGCATTAATGACATT
s HiC_scaffold_1 130872259 617 + 233722169 GTCAACCTCTGAAATCTTTTCTGACCCTGAGGCTCTCTGCCTTTCATCTCAAAAGGCACTATTTTGATTTGCATGCCTGACATAATTTTAGGAGCCCATTTCATGTGACACAGTAGGTAACTTGGGCTAAACTAAGGAATTTACATCACACATAAATTCTTATCGTACT-TACATGCACATACATACCTATAGTGATTGATACAGTGATTATTTGGCATAtctgtttggtaggaatattaaaacaaatatgttCTTGCCAGTTTGGTGGTGgaaacctgtaattccagcatttgggaggctgaggcaggaggatcaccatgggtttgcggtcagcctgtgctacatagtgagttcaaggtcagcctgaactacagagagaccctgtcataaaaaggaaaaaaaaaaggttccctCTTTTCTGCTGGATATGAGTTAG---GGGAAGCCCTATTTGCTATTGGTAGATGTTTTTTGAGGACTACTATTA---AAACCATTTTCAAGA-AGAAGCAGAGACAGCGATGAG----GAAGCAGAAACTTTGATGAGATTATTAAGTTATGAATCAAGACTTAACTGAAACCAAATTTACCTTTATACCTTTTAGTgcaaaagttaataaaatt

a score=37223
s chr3           144642960 1063 + 160039680 GGTATTAAGAGATTAAAAAAGAACATTTCCTTCCTTCCTCTTGTACTGTGTTAATGAGTGTGAAGGGCTGTCTCCGCATTAACTAACAAGGCCTAGCTGCCGCTGCCATGTCTTGTCAAGTGCACACTTTGAAAAGTCTGGAATGGTTAAGTGAGGGTCA----------CCTTGCTCTCTAACATAG-CCACTCAGAGCGAGATGACATTATGTATCA-CGGGGAATGAAGACAGGTGGTTTAAGAGATGTTCTCAAAGCACGAGTTCAAATAGCCCTCTCTCTCTCACTGATCTCTTGGAAGGCCAGCAAGCCCAGAAA-CAGGCAGTGGAAGGGAGCATTGTCTCCTTGTAAATGGAATGACCTGATTTTTACCTCTAGTTGGATTCCAGGAGGAAGCATGATGTCATTCCAGCCACTGGCCAGAAACCTTCTTGCTTAATGAGCACTTTGAGCTTGCTGGCAACCAAGGGAGCCCTTGTTTACTGTGCTTAGAAGCCAGGGTCAAAGA-----TTCTCCCAGCTTTTAGGAAGACAGGCACAGGCTTGCTAAATAGCCCATGTCTCTAAGTATAGTTTAAGATAATGACAGACAGAC-AATGCAGCTAGCTTCTTTACAGCCT-GGAGGGTCAACAGGACAGAGATT-------AGGGGCAGAGACAACACCAGACGTTATTATCCTGTTTA----------------AGCCATCCTTTTTCTGACCCCAAGTGAGGACTGGGTGTCAGCCAGGTTTCCTGTGGCAGCTGTGTGTTA-TCCTTCCAGCCAGCGGCTCTCAGACTTCTGCCCACCCCTCCAGCATTCCTCAGCTGTTGGAACAGTTGCTCTTGGGTCTGGATGGGCTCCACCTA--CTAGCAGCTGTTGAGCTGTATTCTGAGGGTGGAAGCAGATGTCTAGAATACTGGTCACTGGCCACAGAGGTCAATAGCAGGA---------ACATAGCACAGGGGGCTGATGTTTGTCTGGGGTGCATAGTAAGTCAGATTTCAGGCAGA--AGATGGAGTGCTAAGGAAAACAAAAAGACTTCCATTCTACTTTTGAAATGGTGTTATACCCCTGATAATTTTTTAAAAAATCATCTTTG
s HiC_scaffold_1 130879440 1086 + 233722169 GGtggtaaaagat-aaaaaaaatcaatttcttccttcctcttggaCTTTGTTAGAGAGCCGGAAGGTCTATCTCATTATTAGCTAATAAGACCTATCTGCCAGTGCCATGTCTTGTTAAGCACTCAATTTGAGAATTTGGGAATGGT-AAGTGAGGAGCAGCCCCGCCTTCCCTGCTCCCTGACACAGGCAATTTAGAGTGAAACATCTTTGCATGTTATCAGGAATTAAATGGAGGAGgtttaaaagaatttttcaaagCCCCAGTTCAAACAGACCCTTCTTT-TCCCTGATGGCTCTGAGAGCCAGTAACCCCTGAAAGCTAGCAGGAGACAGGAACATTGGCTCTTTGTAAATTGAATGACCCGATTTTTATCTCTAGCTGGATTCCAGGAGGAAGCATGATGTCATTTCAACCACTGGCCAGAAAACTTCTTGCTTAATGAGCACTTTGAGCTTCCTGGCAGTCAAGAAGGCCTTTGTTTACTGTGCTTAGCAGCAGGGGTCAAAGAGCCTTCTTTTCTGGCTCTTTGGAACAAAGAGACTGGATCACCAACTGGCCCTTGTCTGTGTGTA-AGTCT--GACAAGAGCAGACAGACAAATATAGCTGACTCCCAAAAAGGTTAGGAAGCCCAACAGGTCAGAggccaggagagaggagctgagcTGCCCTCAAAGATGGGTCTTCTGCTTCCTCATTATGGTAGGGTAGTCATCC-CTGTCTGACCCCACACG-GGGCTGAATTTCGGTCCGGCATCCTGTGGCACATGCGTGACAGTCTCTGCAATT-----CTCTCCAGCTCCTGCCTCCAGCCCTGGTCTCTCCCAGCTGTCAGAGCAGATGCTTTGGA--------GGGCCCCCCCCACCCCGGCAGCCATTGGGATCTGTGCTGAGGGTAGAAACCGATCTCTAGAACTCTGGTTACC-ACAGCTGAGGGTGAAACCAGGACTGTAAGAGAAAAAGTGCTGTGGGCTGAGATCTACTTGTGATGCATAGGAAAGTAGGTATTAGGCAAAAGAGATCTAGGACTGAGAGAAACAAAGTGAAGCCCTTTC-----TTTAAATAGTGTTA-------GTTACTCTTTGCAGGAAGCAGCTTTG

a score=42695
s chr3           144664259 1479 + 160039680 TACAATGCAA--AAGAATCCACGCTTAATTCATCCAT-ACAATTTCAATCCATCAAACAGATG-----------------------------------TAAGGGA-----------------AGAAA-GACACCAGGCTGCAGTGAAG----GTGAGT-GACTTATATAAGTTCATCACAC----------------CCAGGCTTAAAATCCCCTGTGCTCACTTTTGTAGCGTTCAAC-----ATGTGAGCGTGGCCCACGGACAGTCACACACAGAGCCTGAGCAAGAACTGACGTAGGGCATCACTCTG--------AGAAGAATCCACTGAAGTGCCTCCGCTGCAGAGATGCTAATGGTCCCGAGAAGTGTGTGCTCCTCTCAGGCACTAATGGCCTATTAGGACCCCACAGTTCTGGCACCTTCTTACC------TTGTTAATGACTACGATTAGTTATCCACCATGGTCTGACCCTGAGAAAG-CCTGTC---CGATGTCCTGCCATATAAAACAGTCACTTTGCTGC----GGGAGAAACCGTCTGTTTTTCCCTCTGAATTCATCACGGGGAGGTTGTTCTTTCTAATGGGTTTAGAATCTGAAGTTTCATAAAAGGCACCTTATCTCCCTGGCTTTCTCATACGTCTTCATCTGCTCTATTGACTCTCTCTGATGGAATATACCAGCAGGCGCGGCAAAGTGCTTTTTAATACTTCAGTAAACAGTTGAGAGAGAAACCTCATTACAGATAAAGTGAGAAGTGAGGTCCGACAGCCCATTTATCTTACTCAGGATGAAATAAGGGCTATTGTTCAATTAGGCTAAAGTACAATCTCTCATGTTTCCTTCCTAATGTCTTGTTTGGGAGCAG--------GGGTGGGGGAAGCGGGTGGCACGGTGAGTAAGCTTCTGAAATATTGCCCGGGAATGTG-CAGCAGTATG---TGACCTGGTGAGCCGGGCCACTGGGCTTGGCAGGGCAGCTGCTCCTGCAGAAGCTGCAGTGGATCCAGTTCTGCCA-CAGGAAGCCAGCCAGGCTTGAATCCCTCCGTAGGGGGTCCCTGGGAGAG-----------------------AGCACGAGTTTTCAAGAGTGTGCCT-----GGGAAGGAAAATGGA-AGGAGCCCGTGGTTGTCACTGGGAGA---CAAGTGTGGCTTTAAAAAGGGAATAGTT--GGAAAGTCAATCTGGTCTACACCTAAAATAGAT--AACTTACATTTCTGC-CTCGCTCCTTAGCCATT-----------------------------------------------------------------------------------------AATCATAGCAATGTTTTTGGTATTTTTTTAAATGGGGGAGAGAGGGG-AGAGATGCTGGGTCAGGTATAGAGGCTAGGAAGAGGGGACAGAAG--------------------------CGGGGCTCTCACTTGGCTCTTTCTTAGCCTGCTGGGCTGGTTTAGAAAATGTTTCA-------ATGTTTCTCCTTAGA---TTCACATTTGTTTTCAAAGAATAGGCAAAACCCCATTTCTATTGTTAGACTG---ACTTTGGTGGAGGGCTAATATATTTGCTGGGAAGCACGGAGGTGGGGGCTGGGGGATGCtgttgtgttttgttttgttttgttttgAATCAGATAAGATTTACCTTGAGATGTCTATCAGAAAGTTAAACAAAAA
s HiC_scaffold_1 130892370 1666 + 233722169 TATaatgcaataaagaataaaaaattaattcttaCATTAAAATTTCAGTACTTCGAACAGATGGTTGATCATTCCCCCTGCTGGAATGCTTGCCAGTGTGAAGAATCCATCTCCACTCtgtaagaaatgaaatgatgCTGCAGTGAAGTCATGTAAGTTGACACATTTGGTGTCAAGACCCTGAGCAGGGTCTGCTTCCCGGCTCTCCACCCCCTATGCTCACCTTCGTAGCTCTCAGCTCTCAATGTGCTGCTTCTTCAAGAACAGCTAAAGACAG--TCAGAGCAAGAATATGTGCACATTTTACCCCCGCAGGTGAGAGAAGAGCCCACAAATACGTATTCGGTGTAGAGAGGCTAATGG------------------------------------CTTATTAGGGTCTCATGATTCTGGCAATTTCTTACTACCTGGGTGTTAATGACTGCAATTAGTTATTCACTTTGGCCTGACTCTGGGAAAAACCTGTTATGTGCTGTCTTGCTCTATTAAAAAA-CACTTTGCTGCCAAAGAGAAAAATGCTGTGTTTTGGCCACTAAATCCATAGAGGGGAAACAGTCCCTTCTAATAGGCTTA-AATCTGAACTTTCATAAAAGGCACCTTATCTCCTTGACTTTCTCATATGTCTTCATCTGTTCTATTGACTCTCTTTGATGGAATATACCAGCAGGCACTGCAAAGTGCTTTTTAATACTTCAGTAAACAGTTGGGAGAGAAACCTCATTACAGATAAAGTGAGAAGTGAAGCTGGACAGCCCATTTATCTTACTCAAGATGAAATACAGGCTATTGTTCAATTAGGCTAAAATACAATCTCTCATGTTTCCTTCCTAATGTCTTGTTTGGGGGCAGAGGTATGCGAGTGGGGGAAGCAAGCAGCAGGCTGAGTAAACTTCTGAAATATTGCCCAAGAATGCGACAGCAGAATGAGATGAGTGAGGAGGGAGGGGCACAGGCATC-----AGCAGCTGCTCCTCCAGAAATgtctttgcattaatttctgccagcaggaagcaagGCAGAAGTGGCTC--------GGGAGTCAGGGGAGGAGGCAGCTCCAGCCCTCCTCATCCTGGCCTGGATTTCCATTAGTGTGcctcagaaaggagaggagatggAGAGGAGCAC--AGTCGGCCACGGGTCATCCTCAGGGGGGCTTT-AGAGGGAAAGAGCTGAGAAGAGTTCATTTGATCCAAACTTAAAACGTATGGAGATTACATGTCTGCTTTtgttctttatccattaatcATAAAAAGTTATGTACATACACAAATTCTCTCCAATGAATGCAGTCATTACGTACTGTAAACACATAGTATGAGaaggttttaaaaatcatagcaaAGATTTTGTTGACTTT----ATGGGGATGAGGGGGGAAGAGGTGCTGGGTAGGGTACAGGGACTGGGAAAGAATGCTAGCAGAAAAGAAATCAAGCCATCTTGTTGCCCAAATCTTGTACCTGATTCTGTGTCAGTTGGCTATGTGGTTTGGGAAAgagcttcatttatttatttttccctttggaaatcccatatttattcttaaaagttcctttgcttttcccttttgcatCTAGGCTGTTAAATTTGGTAGAAAGCTGAGATCTTTGCAAGGAGATCC----------------------------------CTTTTCTTTACTTTGAATCAGATCAAGTTTACTCTGAGATTtctg--atatatttaaaataaaa

a score=33233
s chr3           144669682 1186 + 160039680 CTTTTGATTTTCTTTAAGCCATTTGGCCATTGCAGCTGCTGGAGGATGTCTGAGACATCGGTC--CGACAATAGTAACATT----------------------TAACGCAGCTATTGCCCCTGTCAGTGTCCATGCGAGCTGTGAAGTACTTCGCCACACACACTGCGGGTGCACACTGGT--------------GCCTCTTCTTGGTTTCTCAGCTAAGAGAATCCCCATTTCCCTTTCTGTTATCTACTTTTCCCTCCTAAACCTAGGGGTCTGCACccttagcttctaggggtaggatagatcttgtgggtctaagttaattaaggtaatgccaatcc-ctttctagtgaatggttcagaagtggccaGAGAAGATGACCTAAAAGGCTCTTTACAGAATGAGATGGCAGAAGCACCCAGGTTTTTTTTTTTCCTCTTAAGTTAAATACAACTTTAAGGGAAGGGAGAGTTTTTTCTTTAGGGCAGTGGTCATGCATTAGGTAAAAGCAGGGGGGGGGTTTGCTTGTTTTCTTCTTCTTTTTTAACTGTTAAGTCAGTGATGTCAGCGAGCATCTTAATTTACTTCTCATGCTTTGCTTAGACAAGATAATGCACTTAGGGCTGCTTGGCTGGACTCACATGCTTGGCCGCCTCTCAAAGAGCCTTTGGATCGAGGTAGGGATAGGACGGGGCGTTCCCAGGCAGCCTTATCAGTACCAGACAGCACCCAGACTGCAGCCTCAACGGTGTGCATCTGCTTTCATGAGACCTTTAAAAGGCCGGATCTGCTTACAGAGCTGTTA-------GGTCCCACGACCCACCTTCCAGGGTTGACTGGGCAGCCCTCCTAAGGGCTCACCACTAGAAGCAGGAGCTTTGGGCTCTTAACTGTTTCCATCCCTGGAGTATTT--------AGTGGAGGCAAAAAAG--------------CATGGGTTGGGAGTCAAAACAGGCTACTGAGAGGAGTAGGAATTCTTCAACCACTCATTGGCTCGCGAACTCAGCC-------------TTTCCTTCTCTGAGT-----------------------------------------------------------TAACGTGCGTca-ttcttgatgcataggagaggagatatttcata-----------gggtgctagggcttagttcttctgtgaaactct-gttca---ctcagcatatttattgagcgcccgttatagaacaggcactcttgtaaagcaggtactggttgcacagtagtgtacatatgccacca-------tgcttcagtggaacttacattct-------aatgTAGATTCAGTAT
s HiC_scaffold_1 130908843 1260 + 233722169 cttttgtctttttaaaaaattatttggcaTTTCAGCTGGCAAAAGACATCTGAAAGACCAATCAACAATAATATTAATATTCAGTACAGAGGGTCCTGAACAGTAACACTGTTCCTTTACTCATAAAAGTC--TGCTGGCTATGAAATCCTTCA----------TGAAGAAGAATACTGGTTGCTAATCCAGCATgcactctttcctttttttagctaaaagatcttcaatttcatttttaggCATCAACTTTGCC-TCATAAATTTAGGGG-CTATATGCCCAGCTTCCAGG------ATAGATCCTATAGGTCTAAGCTAATTGTACTAATCCCGTTCTGCCTGCTAGCAGTTTTTTAGAAAGTTGAGAAAGAG------CTAG------CTTTACAGAATGAGACTGCAGAAGTGCCTGAAACTCTTT----------AGGTCAAACATAATTCTA-GGAATGGGAGAGGATTCTTTTTAGAGCAGTGACCATACATTAGGTAAAaccatagg----------------ttttttttttttttaa-tgttaagttAGTGAGGTCAGAAAAGATCTTAATTTGCTTCTCATGTTTTGCTTAGACAAGATAATGCACTTAGTACTGCTTGGTTGGTTTCAAATGCTTGGCTGCCTCTCAAAGAGCTTTTGATTTGGGGAAGGGAAAGGACAGGGCATTCCCAGCCAGCCTTATCAGTACCAGACAGTACTTAGACTGCAGTCTCAATTGTGTATATGCCCTTTTGTGAAACCTTTAAAAGGCTGGCTCTGCTTACCGAGCCATTAACTGTGGAGTCCTGCAAGTCATCTTCCGAGGATGGCTGAGCATCCCTCT-----------------AAGGAGGAGCCTTTCGTTTTTAACCTTTTCCAAGCCAGG-GCATTTTTAAAACAGATGCATGGAGAAAAGAGTCACACCATCACTGTGGATGGGG---------AAGCTACTTAGAGGAAT-GGCATTTTCCACCCATTCATTTGTTCATGAACTCAGCCTTTCTCAACAAAGTTTCCTCATCTGAGCCACAGCACACAGAAATTATCTCCAGTGGTTAAGTTGTCTGTGCTTTCAAGGAAGGTGCACAACTTGTGCCATTTCTTCACGCAGAGGGGAGGAATTAACTCACACAGTGAAAGACGGGCATCAGGACTTGATTCTGTCATGGGTTTCCAGCTCATTGTTCCATGTGTTTACTAAATGCCTATTACATGCTGACCACTCTTAT-----AGGTACTGATTTTACTTTGGTA---GTGAGCCAGCAAAGTCTGTGCCTGCATGGAACTTACATTCCTATGGTGAATTTAGATTCAAGAT

a score=19659
s chr3           144671892 904 + 160039680 CTTAGGTTTGAGGTTTACGTCTCCAAACGTTCTGTTCACAGA-ACATTTA----------CTTTCGTCCCCACGGCTTCTGTGaac------aaatttctaacagtttgtgcttattaagtaggtaaatccaaataacttaatagtagtaatttgtgcacaatctgacagatgcctctgtgtttcccttggaattttaaaaatattccaaagtactcctgtgggttttctATCGAGGGCTTAGCATATGCTTGGTCTCGAGGGCTTGAGGCGTAGACAGTGCTATTACGATACAAATGGTCCTTAACAGGG-TAACTTATCATCAGCCCTGAATGCCAGATGCATCCATCTGGTTTGCTGGAGAGTGGGCTAAGCCTAAGGAGACGGAAATTTGTGAGATT--ACGTTT-TGGAGGGAAATGAGGTGAAGGGTAGTTTTAGGC-CAGGGGTGATCGTGGTCATGAGGGAAAACGGCTGCATTCTGGGAGGAGAAGGAGGAAGGCATTGGGTCCTGCT--GAAGCCCTCACAACCCCAGAAAGTGAAGGGACAAGGACAGTGGCACAGCAGTTACTAGGTTACCTGTTTCCTC----------ATGTCTGAAGCTGGCACTGTGTTCAAAACCAAGTGTGAGGGACCGCACT----------GGAGGGCTTGCTCAAGCTTCTGGGTCGAGCATGCCT---ATGTTCTTGAAATTCTAAGGATGTTCATCCTGGCCCTAGTCTTTGCCCTAACTGTTTTGCTTTCTCCATGAGTC-TGCAGGACAGACCACTTT--TGCATCTCACTCG--TTCTGTGAGTAAAACTTGTCCAGGTTCCATCTTGAGCCTAGAGTGCAGATGTTACAGACATGTGAATAACAATCTCTG-TTTTATGAGCTCGGTGTCTTACCATCTATCCGGGAGACCTTCAtctctctctctctctctctctctct
s HiC_scaffold_1 130911209 878 + 233722169 CTTTGGTTTGAGAGGTAAGTTCTCAAACTTTCTGTGTATGGCTATATTTAGCATAGCAATATCTTTTTTTCATGGCTCTTCTAAACCAAAAGAAATATCTAACAGTTT-TGTTTATTAAGT--------CCTGATAATGTAATAATAGTAACTTGTGCAAAGTCTGACATATG--TCTGTGTTTCacttgtaattaaaaaaaatttccacagTGTTCCTGTGAAT------------GCTTAGCATATGTTTGTCATTGTGAGTTTAAAGCATAGAGAGTGATATTAAGATACAAATGGTCCTTAAGAGGGATAACTTGTTATCCACCATGAATGCCAGATGCATCTGTCTGGCT---TGGAAAGGGGACTGAGCCTA--GAGATGGGAAATACTGGTGTTCAACATCCATGGAGGGAGAAGAGGTTATAAATTGCAATAGGTGCCAGAGAGATC-----TGCATAGGAAAAAGGCTGCCTTCCAGAAGGAGAACGAAGATTACCCTGGGCCTGGCCTGGGAGCCTGCAGGGCCacag-aagcaaacaaaagaaagcagtggTGAGGCAG----------ATCCAACTCCTCCGCCCCAGGAGGGTCTGCAGCCTGCA--ATGTTTGCAGTCAAGTGAG-----CCCCATTCCCCGGCTGGAGAGGCCATACTGAAGCTCC----CCGCACACGCCTTAGACAGACTCGGACTTC----AGTGTTCCTGCCAGCTTCCACGTGTG--------GTTC-----------TGAGCCAAACAGCACAGACCACCTTAGTGCCGCTTACTTTGCTCCTATAAACAAACATTTGTCAGACTCTGCCCGGAGTCTGGTACTCAGGTGCTAAGGATAAGTGAACAACAGTTTCTGCTTTTGTGAGCTTGGAGGCCCCATGTCTTTCTTGAAGACATTTGGGTC-ctttctgtccttttcctttt

a score=27030
s chr3           144675811 934 + 160039680 CCCCACACGTCCATCTGGGTTGGTCCCTTCAGCTACTCTT--CAGCTATGCCTGCCAGTCCTCGCCAATGCTGTCTTCCCATGCTTCTCCACTTT---TGTCTGACTAATTGCACCGCACTTAGCTGTCTCTGCTGCTTGTACTCAGCTGTGGCAAGACAATTTGATGAAAACGTAGGGATTTGGAAAAAAAAATTCTGTAGAGGGAAA-GAAAATCATTTAGGCTAATTAAAACACTAAAGAATAATTGGATTGGAGCAGAATCATAAAACTCACTTACCTTATTGGGATATCATGAAACCTAGCTAGTCGGTATTCATGGTTTGAGCAACAAAAGAAAAATTGTTATTGATTTACATATAATCTGTCTGTTGTATCTTCTAAAAGCCTCTGTAGCTTCTATATATCAGGGGAGGATGACACCAAATGTC-----TATTCCTCTTGGATCTATTTAAAAAAAAA----------------------------ACAATCAAAGAGAAACATCAGTGGTGCATAGACAGCAGCGCTTCTCTTGGCTGTGGG-TGGAGA--AGAGGGGTCTGGCTCTGCAGCTAGACATCATGAAGGACTGTCGTCTAGTTTGTAAAGCACCATCGCGTCCACAGAGCACGGCCCATTAGGTTTTTGATGAGAACTTTGGAAAGGCATCTGTCTTAGTTCCTCTGGTTTGTTTTGGTTTCGTCCTAGGCCCTCTCCCCAGC-CCCATGAGAGATGGTCTCACTGTAAATTGTGGCCCGCTCTCAGTTTTACTCACTCGGAGCCTGTGT------------TTTCCTTAGGCAATCTTCTTCCCTCCATTTCGCAACTTCTGAGCCTAAACTTCTCAGTTTACCAAAGCAGAAAC-AAGAGCAGGGGC-TGAGTCCCTTTGATTTGTCTCTCATTGGTGATGCCCGCAAAAGGGTTGCTGAGAAGGGGCCTGGAATTGCTGTCTTCATTAGTGGAGGtgaagaa
s HiC_scaffold_1 130915630 936 + 233722169 CCCGGCACTTCCTCCTGGGCCATGCCCCTCGCCTGCCCTCGCTAACTGTGCAGGTCAGCTCATCTCAGCGCCTTGTT----TGGTTCTCCATCTTGCTCATCTGCCCCACTCCACAGCATCTAATTGTCTGTGCTGGCTGTTTTGGGCTATGACAAAAACATCTGATGGAAATGTAGGGTGATGGTAAAAATCCTTTTGTGGAGATAAGTGAAAATAATCTAGACTGATTAAAATGCTGCAAAAGAAGTGAGTTGGAACAGA-TAATGAAACT-----GTCTTGCAGGGATGCCATGAAAATTAGCTAGTCAGTATTCATGATttgaaca-caaaagaaaagctgttattgatttctgtatAATGTCTCTGCTGTGTCTTCCAAA-GCCTCTTCAGC------ACA-CAGGAGATGGTGAAACCAAATGTTGAGCTTAGGACTCATccatcttttcttaaaaaaatttttttctttctttctttttctttttgccaatcAAAGAGTAACATCTGCAGTGGCAAAGGAGCAATGCTTTCCTTGGCAGTGAGATGGAGACGAGAGAAAGCTGGCTCTGGATTTAGATATTTTAGAGAACTGCAACTTAGATTGCAAAACACCATTGCTTCCATAAAGTATGGCTCATTAGATTTTTGATGACAAATTTCAAGGGGCgtctgtctt------tctcctctgttctcA-------------CCTCACCCCTGTGACCATTAGAGAGCAATGCAGGTTAAATGATGGTCTGTTTTCCAGCCTGATTATGCGGGGGCTGCGTGGGGCGGCTGCCTTTGCTT--GCCAGCTGTGTTCCTCCACTTCACAGCTGCTTGGTCCTAGACTCTGAGAgtggaaaagcagaaacaaagagaAGGGACTTGAGCTCATTCGTTATGCCTCTTGCTGGTGGTGCCAG---------------GAAGGGGACTGGAATTACGGCTTTCAGTAGCAGAGGTGAGGGA

a score=107438
s chr3           144686878 5485 + 160039680 [encoded data, 6417 characters]
s HiC_scaffold_1 130924835 5805 + 233722169 [encoded data, 6417 characters]

a score=5799
s chr3           144691419 115 + 160039680 CCTGTTTAATTGAGAAGTTCTAAGTAGGTAATTGGCACCTTGCCCTTTTGATTTCCTCTCTCTCCCATTAGCCAGTCGGAGTCCATTCCAACGACACTGAACACAGTGATTACCT
s HiC_scaffold_1 190354924 115 + 233722169 CCTGCTTAGCTGAGCAGTTCCAAGTAGGTGACAGGCACCTTCCCCTTCTTGTTGCCTCTCTCGCCAATGAGCCAGTCCGGGTCCATGCCAGGCAGGCTGTAGACGGTGATGAGCT

a score=3982
s chr3           144691891 88 + 160039680 TCACTCACCTCATCGGCCAGGAGTGACAGTTCAGTGCTATTTGCAGCATCATAATCATAGAGGACCCTAGCCTTCCTGTTGTTGCTGG
s HiC_scaffold_1 190355220 88 + 233722169 TTGCCTACCTCATCGGCCAGCAGGGCCAGCTCACTGCTGTCAGCTGCCTCGTAGTCATAGAGCACCCGGGCCTTTCGGGTTCCACTAG

a score=37104
s chr3           144696825 1570 + 160039680 GACTTTCACATA-GAAAGGGAGAC-ACTACCTTCCCAGTTGCTTCTGTAGGTCTAGCATATACTGGTAACACTGTGCATAGTAAGTCATCTGGGCTTCTACAAAGTCATTCAGACAGCGGAGATGATGGGCCTGCAATGGAAAAGTTACGGTCA-TTCTCAGAAGTTCAAGTGCTACAAGCCAAGGGGAACAAAGGCTAACACTGTCACAAGGGAGAATCAGCGG--TGGCAACCTACTGTAAAGCTTATTACTGGGGTACTCCTATCAGACTTACTAAGATGAATTACTGGTGAACAATATGTTGACAAACTTTGTTTAGCCAATAGAAACCAGCAGGAAAATTTATGCAATGTGTAAAATGT--GTGGTGAGATGTGAGAGAAAATGAACACATTTCTT--CAGATCCTTGTAAACTCTCTTCAGCTTTCCTTGAGAGGTAAATGCC---ACAGGAAGCTCTCGCCTGCACATGCTCCTCCTTAGCTGCCTGGGGTTGTCTCAGCGttttttttttttttttttttttttttttttttttGGGGCAATGATGTAACACTCACGTGTGTACTGCTGATTCCCTCAAGCAGGAGTCGGGTAATCTCTGCCTGACGATCAAATTCACTTTGAGTTATTCTCAATTCCTGTTCAGACTGAAATTATAACATACTGTTAGGCTCTCAATAGAAGACTCAGTCCACTTTACATATACCAAAATGAAAAAAAGAAAAGAAAGAAATTCCC--AATATACTCCAAATTAGAGTCTGATGATACACCAACTCT---TTTGTGTATGTCTTAACTGTTTTTGAGTTTCTAGACCTACCTGTGTCACCAAACACAACTGACACAACCC-ATCCTTTATCAGCAC--------------TCGACCCATGCCAAAGCATTAGTTGGACACATT---------------------ATGACTGTCAAGATATCTTTGTACCTTTTCTAGT----ATTTTGCTGAATTGAGTATTTTACAAAATCATAAGAGTACCACA-TTTTATAAGTATAAAGCAGTATTATGTTTAAAACTCCAAATTATTACTGTGTGCTTTTCTTTGGCACTTTAACAGTAGTCTTCAAGTTCAAAT--AGAAGGTTAAAGAGTAAAGCCACAGGCTTCCCACCTCTGTGTTTCGTTACTCAACACTTGTTACTAAGACAGGCTCTTGGCTTCCTTCATGGGATTCTTGGTCCTATACCCTAACT--------TTCTTTTACGA-TTTCTCCCTAAGT--TATGCATAATAGGGTTC-------AGTCAT-TAGCATCATTAAGATTGGA---GTTTTTCTGCCAGTTAGAGTTGGTCTTGAGTACACCCTTTTCTTTTCA----------AAGGAAAAAGGAAGTGCTCTAACCTCCTGATCTACGTGATATAAATACCCTCACTGGGGCTTTTCTCCAGTTCCCAAGATGAAGTTGCTGACTTTG--------GAAATGAGAAGTAG---------------TACTGACTTC------------TGTTTAGTGCTGGAACAAAACAGTTCACAGAGAAAGCAACAATATCTAAATATCCTAAATACTGGCATTACAGATC----CAAAG----TGGTTAGAAGTAGTTCGTAGTAAAGTGAGGAGGAAAAAAATAAATCTTCAGAGATTAATCCCACAAC----TGGAAATGACT
s HiC_scaffold_1 130934821 1584 + 233722169 GACTTCAATATGTGAAAGGGAAATTACTACCTTCCCAGTTGTTTCTGGAGATCTAGCATGTATTGGTAACACTGTGCATAGTAAGTCATCTGGGCTTCTACAAAGTCATTTAGACAGCGAAGATGATGAGCCTGTAA-AGCAAAGTTATAGTCAGGTCTTAGCTCTCAAACTGGTAT--GTTTAGAG--ACAAACTATAACACTGAAATAAAGGAGAATCATGTATCTGGCATCCTACCACAAGGCTTATTA----------------AGACTGACC-----------TTGGTGAACAGTATAATAACAAACTTTGTTTAGCTGATGTAAACTAACCTGAGTATTTAATAAGGGTGGGACAAGTAGATGATAACatggaagcaaaatttaaaatatttcttcacacATCTTTACCACTATAATTTATGGTTCCTTAAT-----AATGACTGAAAATGAAGTTCAGTCTT-----TACTCC----AAGTTGCCTTAGAATGAC-CAGTCttttgttccaaatgaattttt------------------gatgAATAAATACTCACATGTGTACTGCTGATTCCCTCTAGCAGAAGTCTGGTAATCTCAGCCTGACGATCAAACTCACTTTGAGTTATTCTTAATTCCTGTTCAGACTTAAATTAGGACACAGTTTTAGAATCTTCTTGGAAGACCCGGCccattttatat------aaattctttTAGGCAGTTAAAAAAATTCCTCAAACAAATCTCAAATTATAATCTGGCAATTCCCTGATTCTGCATTTGTG-ACATCTAAACTGTTCCTTAATTTTG--------CTATATTACTCAAC----CTCACAAGACCTGATTCATTACCAGCACATGATTCAAAAGAATTTACCAATGCCAAC-CTTTAAT--GGCATATTTATTAAACTAGAAAACCTAGAAAGTCTACTATGGGCAGTTAGAATATTTTCTAGTTTCAATTCTGCCAAGTttgatattttacaaaatt-taagtGTACCACAGTTTCACAAATA--------TGTTATTCTTAAAATTCCCAGTTATTAC--------------CAGTTTTTAAACAAGAGTTTTCAATTTCAGATTCAAAAGACTTCAGAGTGGCACCATAGGATTTCTACTTT--TCTTTAGTTACCAGACACTTGCTGTTAGGAACAGTTCTTTGGTTCCTTCAAATACTTCTTTGtcatacatttaattttatatgtcttcttttaaaattttctatctaAACAACATATAAAATAGGCTTTAAGAAGAAATCGTGTATTATGATTAAGGCTTAAAATGTTTTCTCAGAAGTTATGATTGACCTTCAGTCAGTGTTATGCTGATCAACTGGTTCTCAAGTAAAAGAGGAACACTCTAACATCCTGATTTTCATGGTA-AAATACTCCTGCCACGGGTAATTTCAGACTGCCAATGTCAAGTCACTGAGCTGGTGTCAGATGGAAAGAGATGTATGTAATATGATACCACCACTGGTTTTGAACACCTGATACATTTAGTATTGAGacaaaacagttcacagaaaaattaacaaGCTCTAAAAATAGTCACTACTGGCATAAAACATCTTCTCAAAACTTTTAACTAGAACTTACTGgcaataaag---agaggaaaaaaataaaacctca---------ctCACAACACATTCAAAATAACT

a score=5612
s chr3           144696842 114 + 160039680 GGAGACACTACCTTCCCAGTTGCTTCTGTAGGTCTAGCATATACTGGTAACACTGTGCATAGTAAGTCATCTGGGCTTCTACAAAGTCATTCAGACAGCGGAGATGATGGGCCT
s HiC_scaffold_1 190355812 113 + 233722169 GGGGCCAC-ACCTGCCCAGCTGCTTCTGCAGGTCCAGCATGTGGCGGTAGCATTGTGCGTAGTAGGTCGTCTGAGACTTGACAAACTCGTGGAGGCAGCGCAGGTGATTCACCT

a score=5279
s chr3           144697370 100 + 160039680 CACTCACGTGTGTACTGCTGATTCCCTCAAGCAGGAGTCGGGTAATCTCTGCCTGACGATCAAATTCACTTTGAGTTATTCTCAATTCCTGTTCAGACTG
s HiC_scaffold_1 190356028 100 + 233722169 CACTCACGTGGGTGCTGCTGATGCCCTCCAACAGGAGACGGGTCACCTCGGCCTGCCGGTCAAACTCGGTCTGGGCCACACGGAGCTCCTGCTCAGCCTG

a score=45291
s chr3           144698777 1959 + 160039680 GCTTTTATGGTTCAGCTTATATTCTCTCACACATTGTTTTGCCTTCTTTTC----ATGTCAGAGGTTCAAAAACAA-TGAGGAGCCAGGGTGGA-CCACA------GTTA-----------------------------------------TTGTACTGA-----CAAACCACACAGCCAATAGTTCTAGAAACGATGCCTGGAACACACTGTAGAGTCTGTAGTTTTATACGTGATACCAGTAAG--GCTTATCAAGCTATCTAAGTGTCTGAGGCCACAGTTCCCACGTGTCCTC----TTTGCTAACACCCTCGTTTGGAATGCAGACTTTGGTAGGCCTGCAAGTAAATGGGGGGAGCCCATGACAAATG--TCTGAAGACCCCAA-TAACATTCCAAGTCAATCTACACTA---CTATCATTTTCTTCTTTAAATTATTGAGTTATAACTTGATTTCCCAGCCAAGAGAAAGTAAAAGACAGTAACAGAGGCAGAAGGACAGCTGACCACAGGCAGAGGGACAGCTGACCACAGGCAGAAGGACAGCTGACCACAGGCAGAGAGACACTTTTACAAGCAACAGTATTACACTAAAGGGAAGGACGAAAATTAAAAGACCCAATTGTCACATAGTATAATGATGGATATCTGTAGTTATGAAGTTAACTATAAA-TAAAATATTTGCTATGCTGTATATA-TACAGCCTTAAACTACACATTTTATGGCTATTC-CTACAAAAGTGACAGAAAAAGTCAGTTTGGTGCTCAAGAGACCACCATTAGTTTCCTCGAACCCAGGTCTCTGAAGACAAGGGGCCACAATATTTATTATCTTTACATTTAAGA---TATCATTGAAAAATAACTATCAATAAATAACTCAAGTACTTCACCTGTCTTCTAGGAAGGCACTGTATGAATAGCACTTGCTTAGCTCTTGTCTA--GGACTCCTCATGTTGGCCTAATTCTAGTGCTGTACGGAACTGCTGTTAGTAGCACA---CTCGATAATTCCGTAATTCCCACGTTTG----TAACACAGGTCACAGTGATGAGTGGCTCCAGGCCGGTGCTCATCTGCTCATCTAGTGTCTATTAACTCAATGACAATGACATTTGGTTCCTGATCCAGGCGTTTAA-GGTTTACTTACTTTTGTCACTTCCTCTGCCCAAATCTAGCCAGCATTAAAAATTAGAGAGAAATATACAGCATGAAATAAAGTTGGAATTGAACATTTCCTACAACTTAGTACAGAAAAATGT----GCTTTAATTTAAATGGCATATTC------TCTCC-----CTTACAAAC-----TAACACAGTAGTAATCTAAATCAGTATAGCTGAGTATA-TCAT------GAAGTCTGCCTTCTATATGTATCAACACTACCAACTTAACAATCATATAACTCTACAAATAAGAAAAGCAGCTTCCTCAAATGGAGAAATCTGACCTATCATAGAGAACCTACAGTCTCGTGCAAAATGAAAAGTCGGAACTATATGATTTCTAACTTCTCTTTGAGGAATAAATTCTAAAATTTTAGGAAGTAAAAAATAAATCAAGGATATATGGACACTGAAT---ACTGATACAATGATATTTTGGGAGAAACAAGCACTTTGAAATATAATACATTTAAGATTG--ACAGTTAAATATCTTATTGTAAATAGACCAGAAACAGCTGTAATACAAATGTTTTTAATAAATTGAACAAAGTCTTGCTAATTGTTTAGG-TATTTTTACCACGGACAAAAGGAAACCTATGATT--TACATAAAATTAAAAAATGACTGGAATAGTCTCACCCTTCTCTGTTACCTACAGATAAGACAATGGAAATAAATAAATGCATTCTCTTGCTATCTAAAGAAAACTATAATTTTGCCAGGGCTTCAAAAACTAATAGGTAGAAGCAACAGTTAGTACCAAAACATCAGGTTTTTTTTTTCCTGCTTTTAGCTCAGTGCTAAAAGACTAAAAGTAATCAATCAAGGATCCATTAATTATTAAGTAAGTAGACTATTATTTCTTGCCACTTTTAGTGGGaataat
s HiC_scaffold_1 130937968 1839 + 233722169 GTTATTTTCATTCAAACTACATTCTCTCCCTTGTAGCTCTGCCCTCTTTTCTTTCATGGTAGAGGTTCAGAAATAAATCAGAAGTCAAGGTGGAACCATATAATAAGTTAATGCAAATATTACAGAGGGGGATGTGAACCTACGTCAAGAGTTATACTAGATTTCCAAGTCATAGAATCAGTAGCTCAGTAACCTATGCATGAAACAGATTGTACATTCAGCAATCCCACA----ATGtcagaaaatagtttaaaaagctattaaaat--CAGGGGCCATAATTACCACTTGCCCTCAATCTCCAGCATCATCCTCTTTTGGAAGTCAGGTTTTGATAGGCCT-----TAAAAAtggagaataaatgaaaaatgcttCTAAAGACCTAAAGTAGCATTTGTAGCAAATCTccattgaatttataattttatttcttaaattcttcctttACCACCTGATTTTCTAAGCCAGAGAAGATTAGAAATGGTAACAT-------------------------------------------------------------------GGTAGAGAGACTGTT--------AGCAGTTTGATGCAgcgggaaaaagacaaaaacaatgtaTCCAATTGTTACATCATACAAAAAGGGATACTCAAGATAATGATgttaactgtaaaatgaaatacCTGCTATCCTGTGTTTAATATGGCAGTAAAGTACATTTTTTACAGACATTTTCTGCTAAAACGACAGAAAAAAAAGCTTTGGTGATAGA----------------------AGCTCTGGTT--------------------ATGTTAACTATACc-acatttaaaaatctgtcatttaAAAA--ACTATCAATGAATAAATCACATATTTCTTCTGTTTCGTAGGAAGGCACTATATGATTACCATTTGATTAACAGGTATCTGATGTGCTAATCACGTCT------CTGCAACACTGTTTGGAGCTGCTATTGGTAAAACAGCCCtaagtatttccataattttggattttaaaactaACATAAACCACA------ACTGGTCTCAAAGTTGT-------CACCcaacaaatgtttaataaatgaatGGCAATTAAA-TTGTTTCATAATTCTGTCATGTAATAATTTACTTACTTTTGTTACTTCCTCTGCCCAAATCTAGCCagcattaaaaattagaaaaaaatataaagtatgaaaGAAAGTTGGGATTTAACATTTTCCacaatttaggaaagaaaaacagaataattttaattcaaatgGCATACTCTGGCTTTCTCCAGAATCATACAAACAGATTAAACATTGTAGCAA-CTAAATTAGTACAGCTTAACATATTCATATTGTCAAAGTATGCCTTTTGTATGTATCAGTActatcaattttaaaat--gttaattttgtaaACTAATA----AGTTTTCCCAAATTGGGA-------------ATATTTAATTTAGAGGTTTGGGTGGGATAACAA----------------TTCTAATTTCTCCTTCGGGTATAAATTCTAGAATTctactacat-aaaaataaatgaaggataAAAGGACAATAAATGAAGCTGATAAAGCCATTTTTGGGAAAAAGCAGTAAACTTGAaatgtaattaatttaaaattaccaCAGTTAAATATCTTACTATAAACAGAT----GACATCAGTAGTAAAACAACACATGGTGAATGAAACAAAGTCCTGCTAACCATTTAGGATATTTTTACCTAAGGCAAAATAAAATCCATGATTTGTACACTAAATTAGCAA-----TGAA------TCACACTTTTTATTTATCTATACACAGGACAATGG----AAATAAATGCATTCTTTTG----CTAAGAAAAGCCCTGATTTAGCCAAGACTTCAataatta------------------tagtttaaaaaaaata-------cttttctggC--CTAGTTCAATCCAAATGGAATAAAAGCAGTCAACTAATTGCTGATTTATTATTAACTGTACTGAA---GACTTCTTGTCACTTTTAGTGGCAGTAAT

a score=26958
s chr3           144701085 1100 + 160039680 agccGCAAGGACTACCAATTGCTATAAACCAACATGAAC------CAACTGTGTCTATATTCACACAATTT--TACTTCATTACAGTAAACAAAACTCAGTATCTCAAAAATGTTTTCAATTTGAGCTCAATTTGTCTGAATGT---TAACTATTATAAA-CAATTTTCATTATC-----GTATTCCAGGCTATCGCCATCCTGAAACTTTAAGTGAGTTATTAGCACTGGATATGGAATAGGCCTGGCC-----------------ACTGGAATTTGTGTCATCCAGGAATGG-CAGAAACAATAATTCTATGTTGAATTTCAATAGTAATACAGTAAAG-AATGAAGTTACTAAACAAAACCAAAAACCAAAAGACAAAAAACCCCAAAGTCACTTTGTATACTTTCATGTTTTTTAAGTAATGTAAATTGTGTTAATTTTCATCGCTAAAAGTAATTGTGAAATTTCAGCCTAAATTAACACTACATGAACATCTAAGACTAGATGAAAAAGTGCATTATAG---ACGCATGGTTTTGCAATCTGTGTTTGG------CAATACATTTGGCTGTTATAATGTGC----------------TAGCTGTCCTTCCGACTGGCATTTTCAATGCCTAGACACAAGCAA-TGCTTGACTTCAGCTATTTAGACATGCAGCTAGTAGCAAGAGAAGGCATTTTATGTAAGATGTAGAAAACACAGTAGGCCAACAAACCTTCAGCCATTTTACATGCAGGAAGTTGAGCATGTAAGAGAAATTTACCATAATGTTATCTCCTTCAGGGCGGGCGGAGTTTAGTTGCTTAAGTGCATAGGTGAGAGACAAAGAACACGTTATAGCCATGAACACACTGCA--AGGGTCACTGCTGCACAAGAAAGCACACACTCGGCAGCCA-TTGCACGCTCATGCTCTTTATTTACAAAGAAACAAACCACATCTGCTTTTCTAAAGAGTTCATGCAATAGTGCCTACCCAGAGATACAGAACTTTCAAAACAAAAACCAGTTGATACTTAATTTCTAATCAGACTCATTTATGGGAAACATACGCTTTAAAAATTACAAATTAAC-------ACTATTAAATTTTCATCTATGAAAGCCTACTTCATACCAACACATTTCCTGTTTAATGCTCATTTCTGTT
s HiC_scaffold_1 130939814 1021 + 233722169 AGTTCCAGATACTACCAATTTTTACCAGCTAACATACAAATTACATATCTGTGTTTATATTT-CACAACttcatatttcattaaaat------------------taaaaactgcttCAAACCAAACTCAA--------AATACACATAGATACTATAAAAcgattttcatttttcatttttgctgcaGACTATCATCATTTTGGG---------------TTAGCA------GTGGAATGGGTCTGGCTGCTTACAAGCATAACTTACTGGAACTTATCTCAGCCTACAATggtcaaagaaaataattctttattgAGTTTGGataataaaaaggtaaaacagtAGAGCTACTGAG-----------------AGGCAAAAA---------TCAATTTGTGCACTTCTATGTTTCTT--------TAAAGAGGGTTT-TTTCCACCG--AAAA-----TCTGAAGTGCCAGCTTTC----------------CATTTTTTACTGAGTGTAAAAAGGTAGTACAACAAATCTCTGATTCTAAAATCTATAGTTGGTATAATCAGTACATTTGGCAATAAAAATATAcggtatttttaaagtttcagcaGCACTTCAGG-TAATACTTT---TTCCTCTACACAAATAAATTCACAGCTTCAACAATTT-TACACACAGCTAATAGCAAGAGAAGGCATTTTTTTCAAGATGTAGAAAACACAGTAGGCCAACAAACCTTCAGCCATTTTACATGCAGGAAGTTGAGCATGTAAGAGAAATTTACCATAATGTTATCTCCTTCAAGGCGGGCTGAGTTTAGTTGCTTAAATGCATAAGT-AAAGACAAAGAACACATTATACCAATGAACACAGTGAAACAAAGTTACTTCTGCACAATAAAGCACACACTAAACAAGTATTTAAAagctgatgttttttttttttaa--aagctgatgtttttatactttataaagattccac----------------------------ttttcaaaacaaaaaatggtt-atgtttaattttaacttACAATCCTTTAGGGAAG--------TCTCATTATTGCCAATTAACTgaaattttcattacatttccatCCAGGAAAGCCCTCTACCTATCTTCAGTTCTCCTATTCGAAGacaatttctatt

a score=14816
s chr3           144705086 528 + 160039680 TATTCTTTTT---GACAATTCCTTT---------GAGTTACACATGGAAACAAAATTTATTTACTTTTTAAGCCATAGGCAAATATTTTCAAAATTGATTCATTTTCACCTTAATTAAAATCT----TTTCCCA--TTCCTATTATATCTATCTCCTTTTTTAAAAAAGCATATTAGTCATGCACACTAAGAATA----GAGTACA-AAGGTAGCCTTAGGAGAC---ACCTC-----------------CCCCCATGGTGGTGATTAATGCCTCTTGATGACTCTTTTGTATTGGCTTGGATGTGTTTAGTTCTGACCAATGTGTTT-------------------CATAATAGAAAT--------------------ATGG--------------------------CCTGCTTGCCA------CACTGTTCTGT------------------------------------AATCTGCATTTTGCATGGTGTACCAGTAAAATACTTCACAATCTTTGAAGTTCCTGAGCTGAAATGGTTGTCTATTAGA-------------------------------------CACAAATAAACAG-------ACACTACTTACTGAACTTTTAGTTTCTGCAGCTTTTGCCTTTTTTAGTCTTGTTTTTGCAGCATCCAAATCCAGTCTCTTATTCTGTAATAGTTTCCTTTCTTTCTATAAATA
s HiC_scaffold_1 130944421 714 + 233722169 TATTCTTGCTAGTGACAATTCCTTTCATCAGTTTGAGTCAAATGTGGAAAGGGAATGCATTTAATTTCTGAGCTacatataaatattcaaaaatctgATTCATTCACATCCTAATTAGTATCTCTGGTTTTGCAGTTTCCCAATATA---ATACACCCCCTTCAAAGGACATATT-TTTATCACCACTCATGATATTTAAAGAACATGACACAGCTTTAGGagatctaatttttgttttttttttagtagcaCCTGTATTGATGAATAATGTTTCTTGATAAAACTTTTTCAT-GGCTTGGATGTGTA-AATTCTGATGAATTTGTTTGCAACCACAAAAACAAGACCCTAAAACAAATgctcttttttgggggtggggatggggtacttggactcaaactcaggacctcatgtttgccaggcaggtactgtgctactgagctaaattccccagcccctctattctTAAACACAGTCTGTATCTTACATGGTATAtcactaaaatattt-acaaattttaaagt-actgacctaatatatttttctatcagaaaacaaaacaaaaaacaaaaagaagaagaaaaagaaccaaaaagaaacaaggaaaaaaaactacTTACTGAACTTCTAGTTTCTGCAGCTTTTGCCTTTTTCAGTCTGGTTTTTGCAGCATCCAAGTCCAGTCTCTTATTTTGTAgtagtttcctttctttctataaATA

a score=22239
s chr3           144706224 872 + 160039680 CAGCAATGAATAGCATTTCAAAAACAATACACTTCTTGGAATATATAGCTAAAGTATGGAA------CAGAAATACAATTTACGATATTTAGGTTTCTAGTTAGTTTAAATTAACATGCAAGTATACTATAGCAATATTTTATTTTCATAGTTATTCCAGGAATTTCTCCACAGATTTAAAGGTAGGGCTAAAGACTGGGGAT----------------------------------------TATGTTACGAAAAGCTTTTTCTTGAAGTTTAGTTT-GTATTCTGGTGAGTGTGCACCTATTTAGAA-TATTTAAGCATTTGAATCTGTAACATTTACCATAACTAA-GAGGGTGGATTATTCATCAAAGACAAAGCAGAAGTCTAAATCTTGCGACAAATGG-ATCATTTTCCTACTTACTGCGATTGTTTTGTAATCCCCTTCTATAAAGTTTCTTAAAGGAGTGAGGAAATTTAAGGCTGATGTTTGAATCAGCTCTCGGTCAGCTGTTCCAATTCGCTTCTGTGTTTCTCCACATTTAATAAGGGCATTTCCTTCAAAGAAACaaaaaaaattgtatctttttaatagtttaataatatcagaaaatt------------aatataatttaCCTGCTTGATCGGCTTAAAAAAGTGCACCGTCA--GCCTGTTTATGTCAGCAGAACCAAAC---ATTATTTG----AAAGGTACACTTATTTAAAAGTAATTTAAGGTAAATTATATAAATGAAAAGGACAGAGATGAACTAAGCGCCTATCCTATCATATGCTAACTATAATCTCTGCCGATGAGATTAAAGAGGACGGGTACATGGAGA------------CACA----AAGCTGGCCTGGGGATGTAGCCCAGTAC-AAGCACAGTCTTTTACTGGGTAGATCAAGTCGCAGTCTGTC--CTGTTCCTACATCTGTATACAC
s HiC_scaffold_1 130945183 869 + 233722169 CAGCAGTG--------TTAGAAGATAATACATTTCTGGAAATA----GATAAAGTGTAAGAGCcacaaataaatacattcta--ATAATTAGGTTTTTACCTATc----------------atattttgtaaca--------tttttatcaTT----CAGGAACTTCTCTATAATTTTAGTGTTGG---TAACAACTGAGAATGAATGCAGTACCTCAACATTGtagaacacaaaaatgaaattatgttatTAAGATCCTTTATTTTTGGTCTATTTTTATGTGCTGGTTAAAGTGTACCTACccagaaatatttcaattttctaatcTGCTATATTTATAGTCattaaagaagcaaaattattcaCTATT------------------ATTTTACTAAAAAAGGTAACAtgctccaactcacagcaattgttttgtaATCTCCTTCTATGAAATTTCTTAAAGGAGTTAGAAAATTTAAGGCTGATGTTTGAATCAGTTCTCTGTCAGCTGTTCCAATTCGTTTTTGCGTTTCTCCACATTTAATAAGGGCATTACCTGcaaagaaaaag------------ttttttaaaaaaatgatactgtcagaaaattaaaaattatataaagataAATTACCAGTTTCATTTGCTTTAAA---------GTTATTACTTGTTTATCTCAGTAAAATTAGACAGAATTAACTGTAACTAAGGTAgatttatttaaaagcaaattcaagataaatatttaaatgaaaaagagcaAGATGACTT-----CTTGTTGCATCACA-GTTAACAGGCAAATCTACCAATGAGACTAAGGAGGACAGATATGTCAAAAATTATTTATGGTCACAGCCCAGGGTGGCT---AGATTTAGAAAAGTACGAAGCTTACTATTTTGACAAGTGCGTCAAGTCACAATTCGTCTTCTGTTTCTATATGTACTTACAC

a score=3632
s chr3           144706592 109 + 160039680 CTTACTGCGATTGTTTTGTAATCCCCTTCTATAAAGTTTCTTAAAGGAGTGAGGAAATTTAAGGCTGATGTTTGAATCAGCTCTCGGTCAGCTGTTCCAATTCGCTTCT
s HiC_scaffold_1 190359634 109 + 233722169 CTCACCGAAATTGTCTTCCAGTCCCCTTCCAGGAAGTTGCGCAGGGGCGTGAGGAAGCTGACAGAGGCTGTGTGGATGAAGTCCCTCTCGGCGGCCCCCAGGCGCTTCT

a score=21962
s chr3           144707790 2235 + 160039680 agagaACGCACTCACATTCTACCAGAGAGAGTAGCCCTAATATTTAAAC-----ATTAAAGTAG-CTAAGCAGAGATAGAGAGTGGAGCCACAGAAGGGGAGCCACGCAATCAGGACTCTATTTCCAGTTCAATTTCCAATAAAGCTTGGACAATGTAGATCTTAATCCTTTTATGTTAAAATGAGATTAGATCCAGGTTGGTA--------------------AATAGTTAAGAACTCCGGCCTCTGGATACAGACA--TCTGCATTGGAATCGTCACCAA-TGTGCTCACAGG------TTGTACAGCCTCTTCAAACCTAAATTTCTTGTTTTTAAAATGGGCACAAAAGAATTTCTACTATTAACAATGTTACAAAGCAACACCCAGCCTCAAAACTCCAAAAGGTATTTTA---AAAAATGAGGGTTTACCAAAAT---TACAAATATATTGTGCTTATTGTCCAGAGCCTGGGATACACA-TTTTTAGCC-----ACTTTTCTTGTAATAGATTCTTAAAGTCTAGTTCCAACTCCCAG-ACACATTCACCAGAATTACTAGAAGTACAAATTGGTTAAGAAAAAGAG--AAAATCTAAAA--TATTTTAATATTCAGTCTCCTAGAATCTCCTACCTGT---------------------CTCTGATAAATAGCC-CAGAACAAGCAAGCAATATATCAT-----GAAGTTTCTTTAAAATTAGCAATTATTATTAGCAGTAAATTTAATCATTTCAGATTTCTCAAAGAAATCAAAGAATATACTGTAAATATTTCAGTGTTACATATATAAAAAAGCTAATTTAATTGGTTAATGGCATTATATAATACTTAGGTTTATTTCCTTCTGACACAAGCAGAATATTAGTCATAGAAATCTAAAATAGTCTTGTGTCATAAGAAAATTAGGTGTGATAACAGAAACATGTTGAGGTCCATGTAGGCCCAgagacaacttaggagggaagatgtttgttaccaagcctgacagcctgagtttgatccctgagactctcacatgataagagagagctaattcctgccaggtgtcctttgacctgtgcataaacaccggggcac--------acgcacattcatacaggcacaca-----------caCATTCACACAGATGTACA-----------CAGAGC-----------AAGCAGAGCAACTGA-CAAAGCTGGGTTGGCTGCAA--TGTCACAAGAGAAAACCCGAGTTGCAG----------------------------TGAACCCATCGAATCCAGGCAAGACGACTACTTAACATACCCTGGGTACTGACATC----CAGCAGGTAAACAAAAGCA-ATATGGTCGGGCCAAACAT--------------GCACTTTTAATATAAAATAAATAACCACT--GAAAGTTTTAATCTAAGTCACTATAACAATCAGTACTACAACAGAGGTCATGTCAGACCAAT-------------------------------------AAGAACATGAAT--------TAATT--------TTAAGATGTGAATGCT----------CTATTTTTTTCA-------TCAAAATTTTATCGTAATAAACTTGATCTTAAATCTGATTCAGTT-----------------------------------------------TCCACTCAGAACCTCC--ACTTGAACTTACCATAAGCTGTCCCTGGGCCAAACTCAGTTCCTGCATCAATCATATATTGTCCCAAAAGTTCCGGGTTGTTTATACGACTTGGTGCTTTTCTATCCAGTTTCTCATAAACAAATTCTTCTATCCTGGCATCTAGGAGAGAGGTTAGGAATATCAGT-ATTTCAAAAGAGTGAAAAAGcaggcatggtggcacaggcctgcaacttcagcaacgggaggtggaggcggaaatgctgttatccgaggctaga--gtccactgcacagcgaAGACCTGTACTCCCCAAACCACAAGGGGAAAGAATTTTAAATAAACTAGCAAAATTATTTAAGTAGTTTGTTCCCCTTCCAGCCATTT---------ACTACCTCTTAAAAATACAAAATTAGCATTTAT-----TCAACTATGTCTC--------ATTAAGTCC----AATTATATGTTGGCTCACTACACAATCTCTAAAGGTTTATAGTTCAGAAATCTGGT--AATGTATCTCAGCACAAAGGCAA-ATATTCTAAAGTTAAACTTGTCATTTGGGTATTTTTTGAGATTTTACGTTCCACAAAAGaaatttata-tatttaatatataGTGAAGTTGCCTTTAAC----------------AGCCTCTGAAATTACGCTTATGATTTAAAAATCAGGGATATGTAGCTAGGGAAACATGGATACAAAGTATCTAAGGTCTAAGAGTCATATCTGACAACCTTTTGGCGTGAACATGTCATTCTCTCTTAC---AGAGTCTAAACACAGACACAG-AGCTTAAGGGGTACAACAACCCCGCCCTGGAACAGTCTTCACACTGATCAGCAGTGTGA
s HiC_scaffold_1 130946073 2272 + 233722169 AGAAAAC---CCCCCGTTTTACAACA---AGCATATCTGATATTTAAACCAGACAACACAGTAGACAAAGCAGAGGCA-AGAGTGAA-----AATAAAGGAATCTCAAGATTAGG-CTTTACCTTT-GTTCTACTTTAAGTCTACCCC------TGCAGATTTTAAGCCTTTCGTATTACAATCAGATTAGGTCT-GATTGGTATGGAAGGTAATAAATAGCATAGTAGTTAAGAGCTCTG-TCACCAGATACATGCAAATCTGAATTTGAAT--TTACTAGCTGTGGAAACATGGATGAATTATTTAGCCTCTCCAACTTTGAATCTCCTATCTCTAAAACAGAgatgataaaatttt-----------atattataa-gcaaga--------------tataagtgataatttactaaaatacatgtatttgcacacatgcatacaca-gtATAGTGCTTA--GTTTAATGCCTGGAATACTCAATTTTTAGCTCTTAAATTCTACTACTAATGG-TTCTCAAAGCCCAATTTTAGTTATCAGGATATATTCAGGAG------CAAACATACTaagcagattaaaaaaagaagaaaaatctaaaagtttTTCTAATGTTCATGCTCCACCAGGCCTTCAGCTGTGTGAAGAAAAGGACTGGGTCACCTTCATAGTTGACCTCAGCACAAACAGGAAATGAAACATTCATAAAAGTTTTCCGAAAA------------GTTAACAGT-----TAAAAATTCTTGACTTTC-------------AAATTTATTCTGAGTATTTT-------CAGACTTGAAAAAATTTCTTtaa----------gtattcttt--tatttttgtctttttcctttt-------------tatcggtacccgggatcgaa----------------------------------------------------ctcacgactgcctg--------cttgcaaggcaggtgcttatg-------ctg-----ctgagctaaacctccagccccctctt----TAAGT--------ATTCTTAATAAAT------CAAATTAGCCATGAACAACAGGGAAAGGCAGTGAAAGAAATCTGAAATAGTCTCACAAGAAAATGAGTCTCAGTAATAAAGATGTATAACTTTCAACTTCTGAGTTATGCATTAAAAAGAATAGCAACTAAGTAAAACTGGCTTACTTATAAAACATAAtcacagaaaacatgaaatacaaaacaggaaaatggaaatgaaatataatttgaaC-------ATCTAGAAAGAACCATCGCTGAAATTTTTGAGGGCATTGGCATTTTTGCACTATTTTAATGAATATACAAGTGATTTGTTCAAACATTTATTGTGTATGAAGTACctttaatagaaaacaaatagcCCTCAGGAAAGCTTTA-CAAAAATCATGAGAGACATgtgtaa-agaataaaaatgttgcaAGAACAATGGCAGTATAGGTAAAAATTCTCAACCTTTTAGAACTAAAGAAAATGTatgttctcaataaatatattaaattaaaatgtacaaatttatTGGTCACCTATATTTCtcagttttgttaaaaattttaaaataataaatttaaaattaaaaatgattctaTTATATGTTAATGACACCTCTAAGTAGCAAAAATCTAACGTAAGATACTTCTTATCAGAACTTTTTGCTTTGCACTTACCATAAGCTGTTCCTGGGCCAAACTCAGTCCCTGCATCAATCATATACTGTCCCAAAAGTTCTGGGTTGTTTATACGACTTGGCGCTTTTCTATCCAGTTTCTCATAAACAAATTCTTCTATTCTAGCATCTAGGAGAAAGATTAAAATTACCAGTGACTTCAAAAGAGCAAAAC------------------------TATCTACA--------------AGACTGCTTTGCTGACCTCCAGGCGTAAACTGCCTTCTAAACATGAAATTCCCATTCACTC---------------AAGAATGtaattctctctatatatattttt----tatttttttatcggtaccgcggattgaactcatgaccgcctgct-----tgcaaggcaggtgcttatgtcgctgagctaaatccccagcccctatttatttttaaaacttatatgtAAGAATGCCATACAGCTCTAAGAAACTTGTATTTTGGAAATCTGATACAATATATCTTggcacaaaaacactttaaaataaagctaaattcattattttaata-ttttagggaTTTTAAGTTTCAAAAATG--ATTGGTAGTACTTATTATCTAGTGAAATTGCCTTTGCCCTAACTTTATAATTTTAACCTCTGAATACATATTCATAATTTCAAACTTCGGGATTTTGAGCTGAGAAAACACGGACATAAAGAA-------CTCAAGAGTCACATCTGACA--CCTTCAACAGGAGCA--------CCTCTTGCCAGAGAGTCTAAATATAGGCACCGAAGCTTAAGAGACA----GATTCAGGCTTGGAGTGGGCTCTAGACAGATAAGCAATAAGA

a score=4096
s chr3           144709226 142 + 160039680 ACTTACCATAAGCTGTCCCTGGGCCAAACTCAGTTCCTGCATCAATCATATATTGTCCCAAAAGTTCCGGGTTGTTTATACGACTTGGTGCTTTTCTATCCAGTTTCTCATAAACAAATTCTTCTATCCTGGCATCTAGGAG
s HiC_scaffold_1 190364581 142 + 233722169 ACTCACCATAGGGTGTGGTAGCCCCCAGCTCGCTGGCCGCCTCAGCCATGTATTGGGCCAGCAGCTCCCCATTGGTGACCCTGGAGGGCACCTTCCTGTCCAGTTTCTCATACAGGAACTCCTCCACGCGGGCACCTGTGGG

a score=18095
s chr3           144712318 769 + 160039680 CCTCAACACTTTGTGCTTGTCTGAAAATCAAGTTTAAT------------AACTTATAGGAAAATATCAAACTTAAAATGTCTG------TTTTCTAAACAGGCCTATATGACATTAACTATAAATTTGTTAGGAGGTATAAAGACGTGTTGTGTTCATCATCTCTTCTAACCTAAATCACACACATAAAAGCCACAAAAAAGACCCTGGAGACACAGAACACACTCTTTTCAACCTGAAAACCATCGGCAGCAACACGTAAGGGGGAGAGAAGGGAGGGTCTC--ACTTGGATTTGGCTGCAACAGCACTTCGGTCTGCTTCATTATCTTTTCTGTCCATATTTTGGTACATTCAGCTTTGCTAAGGAGGTTTTCCAGGTGAGCGTCCAGTTCTGTCTTCTCTGCCTGGCCAAGCTTTTCTTCTGTGAACTGTGAATATTTAAAATAAGAATATAAGAATGTAAACACACTTCAAATATA---CAGGAAACTGA--CGAAGAGTAAAAATCAAATCCAAACGATTGAGCCATGTAAGCCATGTAAATCA-----CGCCAGGCTTGTGTATAAGTCACTGCTTATTAG-TGTTGTTTTGTGCCTGT-ATCATTTATCCATCCTCCCAC-----------CCACAGAATTCACACTGTCCTCTGATAA---------------------------------------------ACTGCATGGTGTATA------ATAAGTATTCC-------------------AAACAACCACTAAGA--CTTGGATTGG---CTGACTCTGTCTTTGGATACTGACTGTGC-GTTAACTGACATGGGCAAGTTTTTCAGTCTTTTTTCCTTTTGTATCATCCATCATAAAAGTGACA
s HiC_scaffold_1 130949737 846 + 233722169 CCTCAAAACTCT---------TAAAATTCAAATTCACTGCCTACAGTTAAAAGTTTtaggagaattaaaaacaaaaaagttttaagaGGATTCTACAAAGAG----AAATGCTATT--TTGTGAATTTGTTAGAAGACACACAA-------GTATTTATCATTTCTCC--ACCCAAAGCATATATAAAAAA---ATACCACAGATCTTGAAGCCACAATAAAGtccatttttaacatttaaaaactcattaaCAGTACTTAATGTGGATAAACGGTAATGTTTCTTACTTGGATTAGGCTGCAATAATATCTCggtttgtttcattattttttctgtccaTATTTTGGTACATTCAGCTTTGCTAAGGAGGTTCTCTAAGTGAGCATCCAATTCTGTCTTCTCTGCTTGGCCAAGCTTTTCTTCTGTGAACtgtt-atgattaaaaaataaataaaacaag--------acttTCAATAAGTGCTAGGAAActgaatcaataaataaaaggcaaactcaaat--tcaagcaattctAGACATACAAATAATTGTGTTCTAGGTTTG----TAAGCAACTGCGTATGAACTGTTTTTTTGCCCCAGTGGTAACTGATCTATTCTAGAATAGCAGTAATGatgactttatttttatagtCATCAGGTAACCTTAGTTCTGTTAAAATGTATGAATTCTATAGAAAATCTAGTACACTGTTTGGCATGTAAAGTATACAGATATTCCCTACATATGGACAACATAAAGGTAAAGACTAAGAGCTCTGAATCAGTTTCCAAATCTATATTCAAATCCTAAGTGCACTGTTGTCTCATCTGAACAAGCTTTTGAGAGTATTTTTCTTTAGTATCTTCTATCATAAAAGAGACA

a score=6943
s chr3           144712581 155 + 160039680 CTCACTTGGATTTGGCTGCAACAGCACTTCGGTCTGCTTCATTATCTTTTCTGTCCATATTTTGGTACATTCAGCTTTGCTAAGGAGGTTTTCCAGGTGAGCGTCCAGTTCTGTCTTCTCTGCCTGGCCAAGCTTTTCTTCTGTGAACTGTGAAT
s HiC_scaffold_1 190365167 155 + 233722169 CTCACTGGGGTTGGGCTGCAGCAGCACCTCTGTCTGCCGCAAGATGCGCTCAGTCCAGTTCTTGGTGCTGTCCGCCCGTGCCAGGAGCGTTTCAAAGTGGGCATCGAGCTCAGTCTTCTCAGCCTGGCCGAACTTCTCCTCCGTGAACTGTGGGT

a score=43126
s chr3           144718611 1638 + 160039680 CCAGGGAATCAAAAGCGAGGTGGAATCTCCCATCCCT-AAGCGTTACTCACTGTTGGTAA---GAGTTCAGATTTTACCAAATGATCTTTAAGTTCTCTTGGGGCCACATCATATTGCTATTTTACATATCTTAACCCCGTGATGATCATTCTGAGGGAAAACGCAGCCTCTAGTATAGTAAGTAGTGGGTCAGAGGGCAACTTTGGTTGTCTGCTAGCCAAGCAAGTCAAGCCAGTTTATTTACCCTCTCTAAGACTGCTTCCTTTT-------------------TAAGGGAGGGCG--------AACAATGCCTCTCTGGCAAAGTGACAGAGATGGGCTGCAGCTAGTACGTTCAATGCACAGTAAACTGCTCGTCATACTATTTTTCA-TAAGATAGGCAGTCATTA-CCCTGGGGAACTGTCCGATTCTTTTGCCAAGGATAACGAAATATGATATTCACAGTGCCAGTAAAATG-----AAATGAATCAAGAAATAAAGCAGCA------CACGTGAGATTTA-------TAGTTCGGTGGG-ATTTTGGCACATGGGACATTACTTTTGTTTTCTCTTTCCGGAACAGAGGGCTGCTGCTACCCTATGTCACTAACTTCAATACCAGATTGTTTACAAGCCACGTTGTGAAATTGACATCTGCTCCGAGATTTAACTGAGTTTGCATAATGTGGGTGTTGACTGTAAAAAATCTGCCCAAGTTCCCTATTGCTGACACTTCCTTAATCACAGAATA---AGGAGACGCAGTGAACTTTTCCCTTCCAAGTGCGCCTGAAGCCAAGCGTGCCCGGTCCCCTCCAATGTGACAACAACGTGAATCGCGTCCTCCTCTCACCCCTGCTCTATA-------TAGCCCATCTGGGGAACGCGTCAGGGCACCCCTAATCCTAGGTGTCCTGCGTCCTTGGTGAAGCTGGGACACCGACAGGGACAGGCAATCTCCATCTCCCCCACGGGCTGCTAAGCTCTGGGACAATCCTTCCAAGGGGCAGCAGCGAGGGCTGGTGGGAACTGAGCTGGCAGCTCCTCTGCGTTGAGGGGCAGGAAAAGGAAACTCCCTTCTCGGTCGGACGCGGCCCGGAGGGCGAGAGCGAGCGCAGCGGAGGGTGGGGGTGGCGCCAAGGTGCTCGGCGTGCCCTGCCTCGCCGGCTGGGGCACCGAGGCCTCCGCCCCGGGGTGAACCCAAGGTGTCCGCC--CTGGGCCGCGTCCCG--ACTCGCCTgccggggcgcggggcggcggcggccgggcgAGCGAGGCGGAAAC--------------GGCCAGCGGGGCAGGGGCGCCAG---------------GCCGCGCCCATCGGCAGGCCTGGGTACCAGGGCGACGCCG---TCCCCGACCCGCCCTCCGCTCGCCCTCCCCGGCGCCACCACCCCGCCCGGCCCCAACCGCCGCCGCCGTACCTGCACGGCCCGGCTGAGGAAGGTGCCCGCGTCGGCCGCCAGCTTCTTCACGTTGAAATCCATGATGTTCATGCCGggcggcagccgggcagagccgccggctgcgctagcggggaggcggggagcgccgcggccgggctggggcgccgggcgacggcgacggcggggcggacgtggtaggtggcgggaggcggcgccagcCCCG----CGCAGCTGTCGTTTCCTGGCGGGGAGGCGGGGGAGGGAAGAGGGCG-GGCGCCCGCGAGCGCGC
s HiC_scaffold_1 130960208 1557 + 233722169 CTAGGAAATCTGAAGCTAGAAGGAATCTCCCATCTCTTAAGTGCTACTTGCTGTTGATAATGAAATCTGAGATTGTACTAGCTGAGTCTTAAGGCTTCTCTAGGCCACAACAC-TGACAATTCTATATATCTTAAACCTACAATACTTACCCAGAAGGAGAAAACAACCTGCAATA---------GTAGGTCAGACAGC--CTCTGGTTATTTACTAGCCTTGCAAGTTAAGCAAGTT-ATTTAACTTTA--GAGGCTGCTTCCTTATACAGTATACCATATATAGATAAAGGTGGGCGTGTGTATTAATAACGTCTGTCAGGCAAAGGGACAG-----GACTGGCGATAATATATCAAATGTATAGCAAAACACCTGACATAGCGTTTTTTAATAATATAAGCAGCTATTAACTTTCTGTAACTCTTCCATTCTTTTGCCAAGCACAGT------CTAGATCAACTGTGCCAATAAAACTGGGgtaaaggagacaaggaa---agcaGTAAATCGACAGAACAGATTTGCATGTATTAATTTGATATGCATCTTAGAAAAT---------------TTTCCTCCTT--AGAAAAGAACGCTGTTGATATTCT--GTCATTAAC------ATCAGACCGTTTATAATCCATGTTGTGAAATTTACATCTTTTTGTAGATTTAACTGAGTTAGCATAATGTGGGTGAGGACTGTGGAAAGT-TGTCCAAGTTCCCTACCACTGACACTTCCTTGATCGTGAAATACCGAGAAGGTAAAGAGAAATTTCCCCTTACA-GTGCCTCTGAAAC-----GTATCCCAGTAACTACAACC--ACAGTAACACGG---GTGTCCCCCACCCCTCCTTGCTGTACAGCAGCGGTTTCGCACTTGGAGGATGGGT-AAGACCCCCCTGAACTG--------CGCGTCCTCTGCCAAGTCCGGACACCCACAGG------CGATCTCCATTTCCCTTGCGGGCTGCCAAGCCCCAG-ACGGCCCTTCCAAGG------AAAGAGGGCCGA-GGTGACCGCGCTGGCAGCCC---TGGGTTGCGGGACAGGAAAAGGAAACTCCCTCCTC---------CGGCTTGGTAGGGAAGAG-----ACTGGGAAGGGTGGGGGTGGCGCAAGAACGGTCG-CGAGTTCT----CGCC-------------AGGCCTCCGCC--------AGCCTGAGACGGCCGTCACCCGAGTCGCGTCTGGGGATCCGAAAGGCGGG---CGGGGCAGCGCCTGCGACGCAGCCAAGTCGGGTCCCCACCCCGCCTCGAGGCCCGGGGGAAGGGTGCGACAGTTGGGGCGGAAAGCGGCCGCGCCCACCCCCCAGGCCGGG---CAGGCCGAAGCCGGGGTGCGGGGCCCGG---------GGCGGCGGCGGCGCTTCCCTCTCCCCGCTCCCCAGCTGC-------GTACCTGCACGGCGCGGCTGAGGAAGGTGCCAGCGTCGGCCGCCAGCTTCTTCACGTTGAAGTCCATGATGTTCATGTTGGGAGGGAACCGGGCGCTGCGGCCGGCGGACCTAGCGGGGAGGCG-------------------------GCTGCGCGGTGGCGGCG--GGGGCAGACGTGGTCGGCGGAGAAAGGCGGCGCCGGCCCCGCCGCCGCAGCTGTCGTTTCC---CGTGACGGTGGGGGGGGGAGGGGTGGGCGGTGCCTCAGAGCAGGC

a score=31473
s chr3           144727881 807 + 160039680 CCATGTCGCAGAG--------------TG-GGGAGGAGAACCTGCAGGGCTCCTGGGTAGAACTGCACTTCAGCAATTCCA---ATGGGAGCAGCGTTCCAGCCTCCATCTCTATTTATAATGGCGACATGGAAAAAATACTGTTGGATGCCCAGCATGAATCTGGACGAAGTAGCTCCAAGAGTTCTCACTGTGACAGCCCACCTTGCTCCCAGACATCACAAGATACCAACAGAG---CTGAAAGAGACACACCCACAGCTATGGCGAGAAAAACAGCACTTTGTCTGAGGAAGATTATATTGAGAGAAGAAGAGAAGTTGAAAGTATCTTGAAGAAAAACTCAGATTGAATATGGGGTTGGTCAAGTCGGCCAGAAAATATTCACCCCCAAGGAGTTCCTTTTTAAACACCCGAAGTGCACATCTACTCTCATCATGAGAAACACAAG----------------------------------------------------------------------------CATTATGAAGAAA-------------GGGGGAATTTTCTCAGCAGACTTTCTGAAGGTTTTCCTTCCATTTCAGTTACTGTCTCATCTGCTGGCCATTGGCTTGGGGACCTACATTGGAAGGCGTCTGACAACTTCCATTGGCACCTTCTGATGAAGATTTGGATCTGAGTTCTGTTCACACAGTGAAGGATTCATGTCTGAGC-TGTGACAGCTAG-TTGAAAAGCTAGCATGGTCCTTGGGTGTTTGCACTATGTGTGTTAATTTGTTCTGTAAATGCGGTGTTCCTGATTTAGTGAGACAGAATAGACTC-----TTGTCATGACCTATAATTATACCTATGGCATCAATTAATAAGCATGTCAGACTGATGCCTAATGTA-GCATTTACTAGTA
s HiC_scaffold_1  99979682 882 + 233722169 CCATGTTGCAGAGATGGATCCCTGGACTGTGGGAGGAGAACCTGCAGGGTTCCTGAGTAGAACTGCATTTCAGCAATAGTAGGAATGGGGGCAGTGTTCCAGCCTCAGTTTTTCTGTATAATAGTGACACAGAAAAAATACAACTAGATGCCTAGCATGAATCCTGAAGGAGTAGCTCTAAGAGTTCTCACTGTGATACCCCACCTTGCT--CAGACATTGCAAGATGTTTCTAGAGCTTCTGAAACAGATACA--CATAGCATTGGAAAAAAGAACAGCTCTCAG-CCGAGGAGGATTATATTGAAAGAAGGAAAGCAGTTGAAAGCATCTTGAAGAAACACTCAGACTGGACATAGGATTGGTCAAGTC-ACTAGAAAATATGCTTTCATAAAGCGTTCTTCTTTTAACAGCTGAAGCGCATAGCCACTATTAGTACGAGAAACACGAGGggcattgggggctggggatttagctcaatggcataagcacctgccttgcaagccggcggttgtgagttcaatccccagtaccaataaaaagttaaaaagggggGGGCATCATCTCAGCAGAATTTCTGAAGATTGTTCTTCGGTCTCTGCTGCTGTCTCATCTACTAGCCACTGAATTGTGGATCTATGTTAGAAGACGTCTGACAACCTTCACCAGCACTTTTTGATAAAGCATTGGATCCAACT--TGACTACATGGTG-GGAATTTGTATCTGAGCTTGTGACAGATAACTTGAAGAGTGGCTACAGCACTTG-----------------------TTTGTTCTATACATGC--TATTCCTACT-------GAAAGAATGAAACCTAAAATCATGCTGAGCTATAATTATACCTATAGGATCAATTAATAAGCA-GGCAGAC-AATATCTACGATATGAATTTAGTAGTA

a score=13345
s chr3           144728821 553 + 160039680 AATCATTAAAGGGTTTTCCCCAAAGGAATATTGTGGCCTTATAATCCTATTACATAGCAGAAAATTAAA---GGGTGCGTGCGGGTTATCTGTAAAGGCCTCT-GACTTTGTGAATTG-----AGTAGCAAGTAGAAGCTAAGGTTACCCACGAACCCCACTTTGCAGTTCCCCCTCTGCCTGCTTTGCTGGATGAGGATTCTAGCCTAGCTGTCCACCATTACCTTGGGTGGTCAG----TTTTGTTGCAGGCA-------------------CCTTTATCACTCTG--CTGAATTCTACTGTTTGTATTTAAATCTTATGTGCTCTGAAAATCAGC-------------------TGTCTACTTTAAAAGACTGGAGAT-GAAAAACAAAATCTTTGCCAAATCCACTGGAGAATACTATATTTGC----------ATATCCATTAATCATTATCCAAAG----CTGCTTAAATCGGGCGTCCTCCCAGTCTTCTCTTTCCTATAGCATGGTTTT---AAAGCCTGCCTCCTTGAC-GTGCTGTATATATC-CTGTTGTATTTGTTTCACTGTCCCACACTTAATTCAGGTGTGCTAAAATAAAAGTGACATTTTAAC--AACAAC
s HiC_scaffold_1  99981708 561 + 233722169 AAACATTAAGGGGATTTCCCAAAAGAAATATTGTGGCCTTATAATTACACT--CTTGTAGAATGTTTAATTTAGATGAATGCAGATTGTCTATAAAGACCACTCTACTATAAAAATTGTCTTAAATAATAAGTTG---------------------------------------------TTGCTTTTCCAG-TGAGGATTTCAG-----------GTAGTCACCTTGGGTGGCCAGTATTTTTTGATGAAAGCATCTATTCAGTATCTTTTACCCTTCATTACTCTGGATTGCATCTTATTGTTAG-GCTCAACTTTTGTGTGCTCTTAAAATTAGCTTCACTGTAAGCAATTCTATGTCTACTTTAAAAGACtggaagtaggaaaaaaaaattattgccaAATCCTTTGGAGATTATTGTAGTTACAAGAGGTTAAAAATCCCATAATCATG----AAAGTTTCTTGATTAAACTAGGTGTGTTACCCACTTTATCTTTTCCACACCATGATTTTTAGAAGGGCTGCATCCTTGATAATACTACGTATATTAATACTGTA-TTGTTTTGCCTTTCTACCCTTAACTCAGGtgt--taaaataaatgtaacattttaacttAACAAC

a score=24290
s chr3           144729377 1865 + 160039680 AAAAAGTTCTTGAAATCTTGACTATAAAGAAAGGCTTTCCTCCAAT--AAAACTTTCTTTCTCAGGAAGATCCTACCATAGCAACACTATCAGCCTCATTT--------TAAGAATAGATTATACATTCTGTTGAGGTaataaaaaacaaac--------agataaagaaat--------aaataagta-----aataaaAATGTTTGA-------AATTTTATGTTTTAA-------GGTTAATATTATAGAGTACACA------------------------------------------TATATTTAAGTTC------TCACATACCCATGATATTGTGGGGGCATTGTGGAAGTGATTGGGGCCATTTGTTTTTTTTTTTTTTTCTTTGAAAGTAAAAAAAACattaa-ttatttaccaaacatttattgaatgtctactacatatcaagtttttctctaga-------tccaagagctacaaagtgaaaaaaaAAATCTCAATTCTAACTGTACGTCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAGACTCAGTGTGATGCCTGCAATTCATAGGTAAAGACATTCTTGCTAATCACTTTGTGTACTGATAAAACACCTTCAGCCAATGACAAAAGACATTTGACTTTATGACCTCTTTTGACCATTTTTCTCTACAAATTACTTTTGAAGATATAGATGAAAttcttttaaagatttatttattaatttttatgtgtatgagtacactgttgctgtcttcagacacacaagaagagggcatcagatcccattacagatggttatgagctaccatgtggttgctgggaattgaactcagg---acctct--------ggaagagcagtcagtgctcttaaccactg-agccatctcttcagcccTACAAATTACTTTCATAGTCCCTCTTGATTTCAGTT-GTATAAGCAGGAAGCATTCTTTATTAATTGTCTTACAAATA-ATTCAACTATAAAATTGTTTGCTATTAAATATGAATAATTCCCTTTAATCGACTTGTACAAATTTTTTATTTTCATATACAAAGTGAACTTGCATCACACTGTGAAAAGA----------------GAATGGATATCT-TATTTCCATAGTAAATGGAACAATTAAGAAAT--------TGAATG-AGGAACTGTTAATCTTGATCTACATATAGCAAAAGAATGTTGTTAGTAACTCGGGATTTTCAACTTTGAATATGAACTTCTATATTACAA-----TTGTTGACAGGCAGCCTTTGAGTGTGTAGTAAAGTCATTCTAAAGCAACACTTAGCAAATATGTACAGGATTGCATTTTAGTGCCATTCTATCTTCTAGTTTAAAATAGAGTTAAAAATCACAGTTAACCCCCAAATTGTCATAGAGATTGCAGAAATATCATCACCCAGTGCAGAGATACTATCTT---CTAGAGAAGTAAGCTTGACAGCCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTGGCTCATTCTGATGATGTATCTATGTGCTAAAAGAGAGAGAG---AGATGTTCATTAATATTCCAAAGATGGTCTCTGCCTCTGCCCTGCACC-TGTGTGGAAGCTCTGAGTGGTGCATGACAGC-TTTAG--ACTGAGAGCCCAGATATCATTTGTGTCTGGTTATCCCATCTCACTGATTTTACAAACAAGTATAGGAGCAATTATTGACAAACAAATGTCCAGTTTTCAAAATCACAGAAAAGCTTAATTCAGTATCATATATGTAtgtggtcctttgaataggcttaacccttgggaaatggcactattaggaggtg
s HiC_scaffold_1 130976358 1795 + 233722169 AAAGAGTTTTTGAATTCTTgtctataaacaaaaattttcctCCAATCTAAcactttctctttcaaaaa-atcaCACCACTGAAATATGAATatcttaatttatgttttattaga-TCGTTTATAAATTCTATT-AGGTAATATGTAATTGATTCTATGATGCTTAAAGACCTTTTGGCTCAGATCAGTGTtattaatgattattttttattatattcacttttttttttggtgccatggattgaactcac-gaccatacacttgcgaggcaggtgcttgtgcccctgagctaaatccctggctatattcactttcacaatatcataTACACATGATATTGTCTGGGTACTTTG-ATGTTATGGAGTCAAACT---------TGGgtttctttaaaa---acatactcACTAACTTATTTATCAAACATTTATTAACTATTTACTACATATTAAGTACTGTTCTGGGATACTGTTCTAAGg---atacagcaaagaaaaaatttcctGCCCTAATAGAGCATCCTGGGAAGAGTTGTAAGATCC----------------TTGAGCCAGCCTC------------------CTTAGGTATCAA--------------ACTACATGTTTTCACAAAA-----GTAGC--ATTGTAAAAGTCTTCT-----TAGGACCTAATATGATC----------------------TCAGAATAGAAATAGAACATTGTAA------TATTCCCcaattt------atataaaaacattCTTGTT---------------------------------------------------AGCCATTTCTTTTTGTCTAGGAATGAAACTTTGGTAGACCATTttcaataaataagaaaacatatttgACCTTACCATTATAGACCACTTTTCA--TTGAAAGATTAACTTTATAGTACTTTTTGATTACAGTTTATGTAAATatacaacattcattcataatcaAGCATGGAGTATATTGTATTGTAAAATTATTTGCTGT-----GTGTTTATCTATTTTCAAATGACttgtataaattata-attttattatatcaaatGAACTAGTAGCAtactctgaaaatatttcttcaatgCCCACAAatagatttatatatatttatactaaa------aattaatgaatgtgTTATTCAAATACAGGAAacatttgttttgatttacattttgcaactcaatttt--tattaatt-gaaat----aattaggaatc---acTTTTAAATTACAGAGAATTTTATAATAGGTA--------------AGTAAATTAATAACAATTACATGTTTACCAAGTTTGTAAAACATGGAATTTTAGttctaataaaatttttcatttaaaataaaaacaaaa-tcacagtgaATCCAAAAACTGTCAAGCTGAGAGCAGATATATTGGTACACAGAGCAGGAGCACTGGATTGCCATGGAGGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATTCTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAACAAACAGTTCAGGTG--CATTAAAAGCACTGGGATACCTTATTGCACCACACTGCCTCATGTACAGGGACAACCAGAAATGCACACCAGAGTTTAGTTATGGAAATCCAAGCTATGGTTTTTGTCTAGTTATCCCCTTTT-----CTCTAAGAACAGACATAAAAACAGCTTTTTATGTTGTTACCTCC-----------TCATAGAAAAATTTAATTCAGTATCAAATA-GTACTTG---TTTTAGCtagatttctttatttaaaaagagaaatataatgagctg

a score=6948
s chr3           144730663 302 + 160039680 ATTGCAGAAATATCATCACCCAGTGCAGAGATACTATCTTCTAGAGAAGTAAGCTTGACAGCCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTG--GCTCATTCTGATGATGTATCTATGTGCTAAAAGAGA
s HiC_scaffold_1 131234446 299 + 233722169 ACTCCAGAAGAATTATTTTCC---TCAGGATCAGGATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGACTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTAGCTTCCTTTGGCACCAGGTCAGTGGTGTTAACTTGAAGAGCAGCATCAAAATTGTCTCTCAGCTC--AATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAA

a score=6220
s chr3           144730698 267 + 160039680 ATCTTCTAGAGAAGTAAGCTTGACAGCCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTG--GCTCATTCTGATGATGTATCTATGTGCTAAAAGAGA
s HiC_scaffold_1 131107846 267 + 233722169 ATCTGCTACAGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTC--AATCATGCTTCCACTTATCCTTATGATGTATCGTTCAACTAAGAAAAA

a score=6690
s chr3           144730698 267 + 160039680 ATCTTCTAGAGAAGTAAGCTTGACAGCCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTG--GCTCATTCTGATGATGTATCTATGTGCTAAAAGAGA
s HiC_scaffold_1 131184520 267 + 233722169 ATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTC--AATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAA

a score=6858
s chr3           144730706 267 + 160039680 GAGAAGTAAGCTTGACAGCCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTGGCTCATTCTGATGATGTATCTATGTGCTAAAAGAGAGAGAGAGA
s HiC_scaffold_1 131287921 266 + 233722169 GAGGAATAAACAAAGACACTTGGGCCAAGTTGGATATTTCTGATTCCAGATTAGCCTTATCGACAGCCTTAATAGCAATGAAAAGATTGGTGCCATTTTCAAAGGCAATGTTTTCTGGTTCAAACACAAAGATTTCCTCAGAGTTGGCCTTCTTTGGGATGAGACCAGTTGTGTTCACTTGAACTGAAGCATTGAACTTGTCTCTGAGGTCAAGGACATTTGTACTCATTCGAATGATATACTTGAAAgct-aaagaggaaaagaga

a score=6228
s chr3           144730724 243 + 160039680 CCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTG--GCTCATTCTGATGATGTATCTATGTGCTAAAAGAGAGA
s HiC_scaffold_1 131148261 243 + 233722169 CTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGATC--AATCATGCTTCCACTTATCCTTATGATATACTGTtgaactaagaaaaaaa

a score=6278
s chr3           144730724 261 + 160039680 CCTGTGCGATGTTGGAGACCTCAGAGGTGAGACTGGCTTCATTGTCTGCCTGGATTGCAATGTAGAGCTGGATGCCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTG--GCTCATTCTGATGATGTATCTATGTGCTAAAAGAGAGAGAGAGATGTTCATTAATA
s HiC_scaffold_1 131073041 261 + 233722169 CTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGCTC--AATCATGCTTCCACTTATCCTTATGATATACTGTTGAACTAAGAAAAAAAGTTACATGTAGTTTAGTA

a score=5416
s chr3           144730798 143 + 160039680 CCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGATCCAGAGGATGCTGGCTCATTCTGAT
s HiC_scaffold_1 131323908 131 + 233722169 CCATTTGC------AAAAAATCTGGGTGAGAATTTAAATATCTCTTTGGAGCCAGCCTGCTTAGGATGTAGCTTTGATGTATTCACCAAAATGGCATTGTTAAAATCATCTTGAATATTC------TGTAGGCTTATACTTAT

a score=4451
s chr3           144730844 68 + 160039680 TTGAGCCAGCTTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGG
s HiC_scaffold_1 130976881 68 + 233722169 TTGAGCCAGCCTCCTTAGGTATCAAACTACATGTTTTCACAAAAGTAGCATTGTAAAAGTCTTCTTAG

a score=31220
s chr3           144736498 1673 + 160039680 TTCTGAGAGTAGAGGTTGTCCCTTAAAACTTGATTGTATTTGAAAACTCAACA-------ATCGCTGAATAGAATTTCCCAAGTGTAGAAATACTTAGAAAAT-TGTACATTAC--------AACGAATGTAGCAGAAATCTGCTAGTGTTTGTTTTAAAGTAATTTCAAGGTTGTGCAGACAGGGAGCAGAGGTCAGGGACAG--GACATTAATATTAGAG--------ATGGTTTGAGAATTTTAAATTAAAATGACAGGAATAACTTTGTCCTATTTCAGCTTTTCTGAAGTTCAGCTTTTACATATAAAAATAAATGAATAATGGCCTATAGAAGACATTCCATAAATATTATTTATAAGTGAGACATTGAAGAAGCTTTGGAAAAATGAAAGATAAAGGGGTGTCTTTCATTACATTTTAAAT-TCGCCATCAGACTCACCTCTTCCATTGTCGAGAACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCGTGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAACGACCCTCCAGAGGTTACTCTGTTGAAGTCTTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAACACCCCCAGGCAT-TTGTGAC---TCTCATCT---TGTCTGTTTGTTATCTCGT--GCTGACCTACATCTGCTCAGGGCTTAGGTAAAT---------TGACAGCAGACACTGAAAAGTGGAAGAAAggattggatagaaggctcagtggttaagaacggtggctgtccttccagaggacctgggttcagtacccagcaccaacatggcagctcacacctgtctgtcccttcacttctcggggatctgacaccttcagatatacatatagacaaatcaccaatgcacataaagataaaTGTTAAAATAATAAGGGGGAGAAAGCTGGCTTAACTATCATTTTGAAATGTGATAAGTTAAAACTAATTTTTGACCCTGTTTTCCCTATCACCTTCTCATGAGATCCGTGGCGACAATACTCGTATTTCACTCAGCTTTACAACT--------TACCACAGGGTTTGTTCCACAAGG-----TCAGGAAATGTATTTTTCAGTGGAAATAAAACAAACTGAGGAAGATTGTAACAAATTATGTGGAAATGTCATTTATGCTGGGCCCATTGACATGAATATTGTTTTAAATCACAAGGCTGACTCCATAATTATATAGTTGGGTGGGTGTGACTCTCTATTCAGTGTTTGCtctat-ctatgtatctatgtatctatctgtctgtctatctatctGCAGGTAAGCCATATCTGTTTTAATACTACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTCTGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTTATAATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGTTCGCATTGATGATAAGAGTGTGTCAGAGAGTATACAGCACAGTTAAACACTAGG-TCACACTGTTCTGATACAAAGCCT
s HiC_scaffold_1 130980872 1446 + 233722169 TTTTGGGAGTAAAGATTGTTTGTAGAGACCCAATAGTTTTTGAAAATTCAACAGGatgcaataaatgaataaaattttgcaACTAcagaaatactttgaaaaaattttctttgctAGGGAGAAAAGCACATAACAAAA-----CTATTgtgtattcttaatt---tttaaaatgactcaaaCTGTGAGAAGCATTCTGGCACAATAGAATCTAATACACAAGGCCAGGTTACAGTTCTGTTACTAAACATAGAAATAGCTTGAATCAGTTCATTATCTCTTGGCGTTTC--------AGTTTTCACGTGT-----TAAATACATAATGGTGCATAA-------CTTATAAATGTTATTCATAAATGAGACAACAGAAAATTCCTAGCAAA-TGAAAACCGATGGGATTTCTTGTATCGTATTTTAAATCTTAATATCAAACTTACCTTTTCCTTTATCAAGGACATTGCCAGAGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAATTTAGCCTGAAGGTCTGTAATTTTACTGGGTGGGAACACAGGAGTATGGTTACCCTTAGGAGGCGCTCCTGACACAATGAATGACTCTCCCAAGCTTAGTCTGCTGAAGTCCTCCAGTtcaactttttctgcatcttctttgatttcaggtCTGGGCGGGTTCATTATAATTTTGCCTACCAAACAA-ACAAGCGGTAATATTGTAACCTTTCCTATTCCTATGTTTATTCCTTATCTTGTTAGGTGATTT-----TGCT----GCT---GTAAATGATTGGTGCTGATGGCAAACATTAAAGAAGGGAAG--------------------------------------------CTTTTAG-----------------------------------------------------------------------TGaagcattttaatgt------------------------------------ttttaaatt---------gaggAGACC--------------------ATATGCCACGTTAAAACTCTGTTTTAACTTGTCTTTCTACAGGACTTGACTGAAAATTCTTTGA----GTTCTTtgcatcttagtta-ctttgtagCTCCTGCAGCTGGCACAGTGTTGGCCACATCAGAGATGatcagtaaatttttattttattgtgaatgaAATGAACCAGGTGGGATGTGAACAAAACATGT--AATCATAGACTGTGGTAGGTCCATTAGTAGTAATGTGGGTTTGGAAAATATAGATGA----ATACTTGTGTTCTCTGAAGTAcatta---tattttcaatgtttGCCATATGCAATTTACCTATATA-----------GGTTAT------------------TATTTGTTTCAGTGCTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGTTGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACATTGAGATATAATAATCAGTCATCAGG--------AATGGCGATGTCAGCAGTTTG-----------GAAGACAATATAGTACAGAGTTTA-AGTACA--TGAACCTTGGGATGACACTATTTTGGTTTGAAGCCT

a score=6016
s chr3           144736872 294 + 160039680 AAGGGGTGTCTTTCATTACATTTTAAATTCGCCATCAGAC---------TCACCTCTTCCATTGTCGAGAACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCGTGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAACGACCCTCCAGAGGTTACTCTGTTGAAGTCTTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAA
s HiC_scaffold_1 131108561 294 + 233722169 AAAGAGCATCTTTAACTACAT---GAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTTTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAAGTCTGTGATTTGACTGGGTGGGTATAGGTCAGC---GACTGCATTATTTTGATATCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTCAGTATTCTCATC---AGCTTCAGGTCTTGGTGGGTTTCCTTCGATTTCCCCTACATCAAA

a score=6544
s chr3           144736878 289 + 160039680 TGTCTTTCATTACATTTTAAATTCGCCA------TCAGACTCACCTCTTCCATTGTCGAGAACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCGTGGTCGCCATCAGGGGGCGC---------TCCAGACACAGTAAACGACCCTCCAGAGGTTACTCTGTTGAAGTCTTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAA
s HiC_scaffold_1 131148952 289 + 233722169 TGCCTTTCACTACATGAGTAAACCACCTGACATTTCATTCTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTCGAGGTCAGTGATTTGATTTGGTGGGAATG------------CTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCAC---AACCTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCATTAAAA

a score=6544
s chr3           144736878 289 + 160039680 TGTCTTTCATTACATTTTAAATTCGCCA------TCAGACTCACCTCTTCCATTGTCGAGAACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCGTGGTCGCCATCAGGGGGCGC---------TCCAGACACAGTAAACGACCCTCCAGAGGTTACTCTGTTGAAGTCTTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAA
s HiC_scaffold_1 131073732 289 + 233722169 TGCCTTTCACTACATGAGTAAACCACCTGACATTTCATTCTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTTGAGGTCAGTGATTTGACTTGGTGGGAATG------------CTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCAC---AACCTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCATTAAAA

a score=5363
s chr3           144736911 265 + 160039680 CTCACCTCTTCCATTGTCGAGAACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCGTGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAACGACCCTCCAGAGGTTACTCTGTTGAAGTCTTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAACACCCCCAG
s HiC_scaffold_1 131185279 259 + 233722169 CTTACCTTTTCCAACATCAAAATCCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATGGGTCAGTGACTGGAGTATTTGGATAC---CCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTATCTCAGTATTCTCATC---AGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATCAAATAGTTTCCAG

a score=6208
s chr3           144737853 179 + 160039680 ACTACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTT---CTTCTGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131292090 182 + 233722169 ATTACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTTCCCTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCT

a score=6770
s chr3           144737853 240 + 160039680 ACTACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTTAT-----AATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGT
s HiC_scaffold_1 131025122 243 + 233722169 ATTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaagga-agaaattattatcaaa--aagaaaagatg--aatttatgcattttat

a score=7974
s chr3           144737855 238 + 160039680 TACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTCTGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTTATAATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGT
s HiC_scaffold_1 131150087 233 + 233722169 TACTCACCATTCTCAACCAAACCTGGTACA---AAGGCACCTCTATTCCGTGGTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAAT--TATTATGAATTCAAGAAAGAATTCATACATTTTGT

a score=7974
s chr3           144737855 238 + 160039680 TACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTCTGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTTATAATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGT
s HiC_scaffold_1 131074868 233 + 233722169 TACTCACCATTCTCAACCAAACCTGGTACA---AAGGCACCTCTATTCCGTGGTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAAT--TATTATGAATTCAAGAAAAAACTCATACATTTTGT

a score=6892
s chr3           144737856 176 + 160039680 ACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131109312 179 + 233722169 ACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTCTCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCT

a score=7869
s chr3           144737856 176 + 160039680 ACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131185999 179 + 233722169 ACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCT

a score=7512
s chr3           144737856 176 + 160039680 ACTTACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTCAGTCTGGTTTTGTTTCTTTGTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131236338 179 + 233722169 ACTCACCGTCCACTACCCAGCCTGGTATATATGCGGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCT

a score=40271
s chr3           144746552 1187 + 160039680 AAGTTCCATGGGAAGTATGAAACTGATAAACAAATTTAACCAAAATACTTGTGCTTTTGTCTGGGCTTGCTTTGTCAAGATAAGCAAGTAAGAAGTTTTAAAGAC---------------AGTATTACTCAAATA-GGTTTATAACTATTTAAA--AAATGTTGACTACCAAGTTATAGGATCCTATAGGAGAATTTCAA--TTCATGGAATTG-ATACAGGCTCCCAATACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGACTTGGTACCCGT------GATGCTGTAAGTCCAAGTACCTGTCTG------AAAAAATTCTCTTTAAGAACTTTGCTAAGGATTTCTTGCTACTTGGAAAAATAAAATTGAAAAACGtggggtgctgaatatggaactcatgccttacgcatggtaaacaactgtcctactaagagtagagacctacattgctaacctcAATACTGATTTTAATGGGTGATTGTTAAAAACTAATAGATAATATAGATTTGAACACTTAGATATTCAACTTAATTTTTAGTGAAAACTATTCTTTCATTGATCTTAATACTGATAATGTAACATGTCATTATTTTATTTTTACAGCACAAGTATGGATTAATAAAAC----ATGGTGAAAAGAATAGACTTACCTCTGCAGTGCCCGGTATTTGAAGTCTAGCAGACCGGATGTTTAGTTTATCATCTTGGAAATCTGAGGTTGTATATTTTTTTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTTTTACCATCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCAGAGGTACTGTACCGTTTATCCATGCCCCTGCTCTGACATCGAAGGCTTTGCTCTCCAACTGTAACAGAAAGAAAAAGCAAACACATAAAACATATTTGTTATCTTAAGTAGTGGAATTTTCTAATTTAGGCAGTTCAAAGTAATTTAAAAATCATATATAAGATTTAGTTGCAATGATGATTTAAAACATTCTTCAAACCACA
s HiC_scaffold_1 130982702 1121 + 233722169 AAGTTccacagaaaaagtaaaattgttcATGACATTTAAAGAAGGTAATTATTCTTATGTCTG----TGCTTTGTCAAGATAActaagtgaaaaattttaaaaaattatagctaaatgtaattttcattaaaatatgattAATCAGCATTTACAGGAAATATTCACTTCTAAATCACGGAATCCTGTGGGAGGATTTAAAATTCAATAGAAGTGGATGCAGATTCTCATTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGGTAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaaattaaaaaaaagactgtaaaagcttttgtaatattttcctactctt----------aaattta---------------gaatataaaattatt-----------------------------------tagaaatttaaaatgat--------------ttttcatatttgatt-ttacaaACTGGTAAATAGtgca-attttattacttttattt----ctctgctttta-tGACAGATGATGTGTTGCT-ATTTCAACATTGACTGTATGagatgttgt--ttttatttttttatcatagGAATTGACTAATAAAacgatgaaaataaaaaaaatggatcTACCTCTGCAATGCCTGGTATTCGAAGTCGGGCAGAATGAATATTTAgcttatcttctttgaagtctgaggtttcatatatttttccttttggatcCTGAAGAATAATTTCTGGCTTCCTTCTTGTCCAGGTGACAACAAAGAAAGTGTCATTTCCGATTGTACTATCCACAACCACTGTACCATTTACCCATTTATTCCTTGTAATGTTAAAAGCTTTGCTTTCCAACtattacaaatgaaa-----acacacataAAATGCACTTATTATTGTAGGAAATGGGATTTTAAAGTTT----AGTTCatagtaattttaaattta-----aaattttaattaaagtaa-GAATTAAAGGATTTTCCAaacaata

a score=5992
s chr3           144746760 274 + 160039680 TACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGA------CTTGGTACCCGTGATG-CTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131152087 277 + 233722169 TACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCGCATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTCGCACTCACTGTGATTGGAGGCACAGCAGCTTTTGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGAGATTGCTTTGG----CTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAA

a score=7313
s chr3           144746760 274 + 160039680 TACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGT-----------AATCAACTGAGACTTGGTACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131187892 277 + 233722169 TACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTG--------AAGATTGTAAATCCATGTGCCCACCTGAAA

a score=6289
s chr3           144746760 274 + 160039680 TACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGA------CTTGGTACCCGTGATG-CTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131076889 277 + 233722169 TACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCACATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTAGCACTCACTGTGATTGGAGGCACAGCAGCATTCGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGGGATTGCTTTGG----CTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAA

a score=7492
s chr3           144746760 274 + 160039680 TACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGT-----------AATCAACTGAGACTTGGTACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131238345 277 + 233722169 TACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTCGGGAAGGTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTG--------AAGATTGTAAATCCATGTGCCCACCTGAAA

a score=7925
s chr3           144746760 274 + 160039680 TACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGACTTGG---TACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131026423 277 + 233722169 TACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTGCTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCTAAAA

a score=6817
s chr3           144746761 221 + 160039680 ACCTGCCCCATTGTCCCAGAGCTCCAAGGTGACTTGATGTCCATGTTCAGCTTCTATGAGGGCTGTGACATTGGCTCCCAGAACAGGCAAAAATCCTTGGCTGACCCGTGCGTACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCAGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAA
s HiC_scaffold_1 131111199 221 + 233722169 ACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGA

a score=4444
s chr3           144747449 183 + 160039680 TTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTTTTACCATCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCAGAGGTACTGTACCGTTTATCCATGCCCCTGCTCTGACATCGAAGGCTTTGCTCTCCAACTGT---AACA-----GAAAGAAAAAGCAAACACATAAAACATATT
s HiC_scaffold_1 131239199 191 + 233722169 TTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatatatttaaaaaagaatgaatacagaTAAGACCAATT

a score=4119
s chr3           144747449 149 + 160039680 TTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTTTTACCATCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCAGAGGTACTGTACCGTTTATCCATGCCCCTGCTCTGACATCGAAGGCTTTGCTCTCCAACTGT
s HiC_scaffold_1 131188750 149 + 233722169 TTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGT

a score=9656
s chr3           144747841 272 + 160039680 TAAAAATGAGATGTGTAAATCTTTACTGTGGGATTGAATGGTACTTTGCAACTGAGCCAACACTTTGGTCTTGTATCTGAGTAACCATGGAGACAGAAGCTTGTGTTTAGTGCGATGAAAAGAGAGTGGATGAAGAGGGAATGAAAGTGGCAGGGACTGAACAATTTAAGATGCTGTCATGTGAAGAAGCTGAGAAAGAGGAACGAAGTGAACTTGAAGGTCATGGAAGAGACAAAAAGTAATGTTAACACAGGGAATTGTTGAACAGCTTT
s HiC_scaffold_1 130984895 259 + 233722169 TAAAACAGAGGTGTCTAAATCTTCACTGTAGGATTGAATGGTGTTTTGGAATTAAGCAATAATTTTGAACTTGG---TGAGTAACCATAGGGAAAGAATGTTCTGTTTAGTGGTATTGACAAAAAGTAGATGAGCAGTGAATGAAGATAGAAAATACTGAATAACTTGAGAAGTTGGTACATGaagaagt--agagagagaaaagaaactaattggaaagac----aaaagacaaa---taattttaG-GTGGGAAATATTTGTGCATATTT

a score=65964
s chr3           144748248 4293 + 160039680 [encoded data, 4702 characters]
s HiC_scaffold_1 130983873 4227 + 233722169 [encoded data, 4702 characters]

a score=6304
s chr3           144749640 172 + 160039680 GTTCAAACTGTTCCGAAGTT--GTACCTGTCATGTCCGACAGAGTCTCCAGTTCTCGGGCAGCCGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACGTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131297755 174 + 233722169 GTCTAAACCGATCCGTCATCCCTCACCTGTCATTTGAGAcagctgctccagctctgcagctgcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCC

a score=3799
s chr3           144749686 126 + 160039680 CAGTTCTCGGGCAGCCGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACGTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131243020 126 + 233722169 CACTGCTGGATCTGCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCC

a score=4654
s chr3           144749697 115 + 160039680 CAGCCGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACGTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131032272 115 + 233722169 CAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCC

a score=3813
s chr3           144749699 113 + 160039680 GCCGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACGTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131192733 113 + 233722169 GCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCC

a score=5673
s chr3           144751929 229 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGC--CTGTTGGGGGAGGTTTGCGGTG---ATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTC
s HiC_scaffold_1 131300615 229 + 233722169 TCACAGTAAATGCTGATTGAAGGCCGGAGCAGATGGATGTCCCTCCTGAAGAAACTGTTGGTAAGTGTTTGGTGAGTGCATCTCT-----GTCTGCATCACTCTTTATCTGGACAAGTTCACTTCGTACTTGGGCGCTACCGTCAAATGTTACCAGCCCAACCCAGGACCTGTCCTCCACCGTCTGCAGCAGGAAAAACTTGGCCGCTTGATTCATGCGGTCAAGGCGGTTATC

a score=6814
s chr3           144751929 227 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGCCTGTTGGGGGAGGTTTGCGGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCT
s HiC_scaffold_1 131032621 227 + 233722169 TTACCTGAAGAGCAGATTCGATTCCAGAGCAGATAGAAATTCCTCCTGAAGCTTCTGTAGGTAAGCTCTCTAgaagttttcttctttcattgtAGCTAGTTACTTGGACTAGCTTACTTTTGATGTGAGCGGTACTATCATAAGCAACTATTCCCACCCAGGAACCATTTTCAACAGTTTGAAGCAGGAAAATTTTAGCTGCTTGGTTCATTCGATTTAGCCGGTTT

a score=7252
s chr3           144751929 334 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGCCTGTTGGGGGAGGTT------TGCGGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTCCTG--TAAGAGAAAGATGCATGTACAATAGCAGGGTCTCTTCCAACCT-----TGACGGATTAATGAACAATAAAGGCATCCATGGACCA--TAGAACATGGTAATAATTAATG
s HiC_scaffold_1 131244757 341 + 233722169 TCACCTCAAATGCTTTTGCAATCCCACTGCAGATGGAAGTTCCTCCGTTAGCATATGTAGGCAAGCTCTTCACTAGGGTG-TCTCTT-----TCAGTATTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAATTTTGCTGCTTGATTCATTCGAGTGAGGCGG-CTACCAGCCTGAATGAAAAGCGAAAG-AAAACAACCAAGTAGTTTTCAACTGGAAGATAACAGCATCACACATAATGagtatatacatgtaccaataaGAATTTTTCAATAATAACTG

a score=7755
s chr3           144751929 224 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGCCTGT-TGGGGGAGGTTTGC----GGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGG
s HiC_scaffold_1 131194403 224 + 233722169 TCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTT-----TCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATTCGAATGAGGCGG

a score=7768
s chr3           144751929 242 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGCCTGT-TGGGGGAGGTTTGC----GGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTC---TTCCTGTAAGAGAAAG
s HiC_scaffold_1 131081415 245 + 233722169 TTACCTCAAATGCTTTTTCAATCCCAAGGCAGATGGAAGTTCCTCCGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTT-----TCACTGTTGCTTCTTATTTGTATTAGCTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATCCCTACCCAGGACCCATTTTCCACAATCTGCTGCAGGAAAAGTTTTGCTGCTTGATTCATTCGATTCAGCCGGTCACTGCCctgaatgaaaaag

a score=7562
s chr3           144751929 378 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGCCTGT-TGGGGGAGGTTTGC----GGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTCCTGTAAGAGAAAGATGCATGTACAATAGCAGGGTCTCTTCCAACCT-----TGACGGATTAATGAACAATAAAGGCATCCATGGACCATAGAACAT-----GGTAATAATTA--ATGGACATTAAAATTTTAACTCTTTAATCTAATTAAAAAGTTTAAGA
s HiC_scaffold_1 131118550 381 + 233722169 TCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTTTT-----TCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCGG-ctatcaaaaagcaaaag--------aaaacaaccaagtAGTTTTCAACTGGAAGATAATAGCATCACACATAATGAGTATATACATTTACCAATAAGAATTTTTCAATAATAACTACTATGACTGATaaaaattgttctcttttttcaacTGATAATGTTGAAAA

a score=7540
s chr3           144751929 229 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGAAGCCTGTTGGGGGAGGTTT------GCGGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTC
s HiC_scaffold_1 131156838 229 + 233722169 TTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGT-ATCTCTT-----TCGCTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATTCGAGTGAGGCGTTTATC

a score=20689
s chr3           144754649 473 + 160039680 AACTAAACCTCAGAATAAATTATAGTTCTGTATTTCGCTTAAATACTTAATTTAAGAAATCCAGCATATCGTT-TCTTACTTTGTCCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAACCTGATATTGTAATAATTTATAAGGGATCACCTTCTTTCTTTTCAATGCAGAGTTAGTTGTCACATGCATCCTGAAGAGGATTTGTCTCCTGACAAGCCGG------TTTGTATGTAGATACTTTCCCGTCCATTTTACACGCTTGGAGG
s HiC_scaffold_1 130988412 467 + 233722169 AGCCAAACCTaagattaaattatattt------ttcatttaaatatgtaatttaagaGAGTAAGCAAAAAACTGTCTTACTGTAGACATGCTTCCAGATTTATCAAGTACCAAGCAGACTACTCGCTGTTGGGACTTGAGCAGTGAAAATGTAGGATGAGGTGGTGGATTTGTTCCTTTCAGAGGAATTGCATTCTGAAAATCAGGAGATTCACTGATTACATCCCATGTGCTTCTGTGATTgcacattttgttttgaaggttTGGAGCTTCTCTATTGTGTGTTTTTGCTGTGCAAAATTCAACCAcctggaaa--aaaataattagaacacAATATTGTGGTAA-GTGTGAGGCATCACCTGCCT--TTCCAAATATGTAGCTAGCTGCCATATGTACCC--AACACATTTTATCTCCCGGAGGTCCAGAATTACATTGTAATCAAATATTGTGACACACATTTTGCATATTTGAAGG

a score=9928
s chr3           144754723 610 + 160039680 CTTACTTTGTCCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAACATAAATC---------------------AATTA--------------------------AAACCTGATATTGTAATAATTTAT----------------------AAGGGATCACCTTCTTTCTTTTCAATGCAGAGTTAGTTG---TCACATGCATCCTGAAGAGGAT--TTG-TCTCCTGACAAG-------------CCGGTTTGTATGT--AGATACTTTCCCGTCCATT-----TTACACGCTTGG----AGGGTCATCGAGGAAAGAAGTGGAAAGC---------------------------------ACTTACAGAATTAAGGTTTTGCATGAACATTATGGAGGCCCCAGCCGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTGACACAGTTGCCTCTCTCACAGTTGTGAACCACATTGGTGCCAGTGATCCTGGTGGAACACCT
s HiC_scaffold_1 131034837 730 + 233722169 CTTACCTT---CATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGG------TGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAAGGTTAATatgataaaagattttaaaattatcttgtcCATTTAAAAATCTATCTGTAAACCTGAAAGAATAGCAATTTATTCTGTAATTTTATTGTTTATCGAATAGAATATGATTATTCAATTAATAGTAGAGTAAGGTACATTTTCAATAATtctgataataataatagctatacTGACTGGTTACTATTGGCTCCCAGTTAATacattaaaaaactttt---tttattaatagtaacatttttaatCTCAGGTTTCCTAAGTAGATATGTTAAAAACATGATTACAAATTCTGAAAACAAAGATTGGCATACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTCTAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCT

a score=8611
s chr3           144754724 238 + 160039680 TTACTTTGTCCATGCTTCCAGATTTATCCAGCACCAAGCACACCACT----CGCC-TTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGA---AAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAA
s HiC_scaffold_1 131343052 238 + 233722169 tTACCTCTGCCATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCCATCCTGGAC---AACAG--AGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGG---GATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAA

a score=10582
s chr3           144754733 256 + 160039680 CCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAACCTGATATTGT
s HiC_scaffold_1 131301496 244 + 233722169 CCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGGTTTGTTGT------CATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAAT---TGTCAATGAAA---TGATATAGT

a score=9971
s chr3           144754733 245 + 160039680 CCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAA
s HiC_scaffold_1 131085626 239 + 233722169 CCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTG-----GTGTCTC-CATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaa

a score=10624
s chr3           144754733 245 + 160039680 CCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAA
s HiC_scaffold_1 131160958 239 + 233722169 CCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGG------TAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaa

a score=9322
s chr3           144754734 228 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAA
s HiC_scaffold_1 131249613 222 + 233722169 CATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTG-----GTGTCTC-CATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAA

a score=10160
s chr3           144754734 253 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAGTGAAAATGTAGGTGGAGGAGGGGCTTCTGTTCCTCTCATGGGAGGGGCATTCTGAAAGTCAGCAGACGTCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTTTTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAACCTGATATT
s HiC_scaffold_1 131199264 247 + 233722169 CATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTG-----GTGTCTC-CATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaatagaaaagtaatttt

a score=5403
s chr3           144755108 225 + 160039680 TACACGCTTGGA----GGGTCATCGAGGAAAGAAGTGGAAAGCACTTACAGAATTAAGGTTTTGCATGAACATTATGGAGGCCCCAGCCGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTGACACAGTTGCCTCTCTCACAGTTGTGAACCACATTGGTGCCAGTGATCCTGGTGGAACACCT
s HiC_scaffold_1 131086222 227 + 233722169 TATATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACA--TACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCT

a score=5414
s chr3           144755108 225 + 160039680 TACACGCTTGGA----GGGTCATCGAGGAAAGAAGTGGAAAGCACTTACAGAATTAAGGTTTTGCATGAACATTATGGAGGCCCCAGCCGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTGACACAGTTGCCTCTCTCACAGTTGTGAACCACATTGGTGCCAGTGATCCTGGTGGAACACCT
s HiC_scaffold_1 131161557 227 + 233722169 taTATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACA--TACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCT

a score=12195
s chr3           144755128 225 + 160039680 GAGGAAAGAAGTGGAAAGCACTTACAGAATTAAGGTTTTGCATGAACATTATGGAGGCCCCAGCCGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTGACACAGTTGCCTCTCTCACA---GTTGTGAACCACATTGGTGCCAGTGATCCTGGTGGAACACCTATGACAAAAGAATTGGATTA
s HiC_scaffold_1 130991881 228 + 233722169 GAGCATAGAACTGGAAGGCACTTACTGAATCGAGGCTTTGCATGAACATTATCGAGTCTCTTGCGGTCTGGGATTTGTCTGGGATAAATGTGCATTTTGCTTCGTAAAGTCCTGTCTTGGAGTCACGTCTACACGGCCTTGTTATACAGCTGCCTCCCTTGCATTCATTGAAAACCACATTCATACCAGTAATGTGAGTGGAGCATCTGTGATGAAAGAATCAGATTA

a score=5606
s chr3           144755129 204 + 160039680 AGGAAAGAAGTGGAAAGCACTTACAGAATTAAGGTTTTGCATGAACATTATGGAGGCCCCAGCCGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTGACACAGTTGCCTCTCTCACAGTTGTGAACCACATTGGTGCCAGTGATCCTGGTGGAACACCT
s HiC_scaffold_1 131250239 204 + 233722169 AGGAGCAAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTCTAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCT

a score=5846
s chr3           144755146 187 + 160039680 CACTTACAGAATTAAGGTTTTGCATGAACATTATGGAGGCCCCAGCCGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTGACACAGTTGCCTCTCTCACAGTTGTGAACCACATTGGTGCCAGTGATCCTGGTGGAACACCT
s HiC_scaffold_1 131199909 187 + 233722169 CACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTCTAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCT

a score=32948
s chr3           144757120 1471 + 160039680 TCTCAGCTGA----TCCTTTTGTGCACGGGTCCAGGCAGCTCTG-----------CAGATC-------ACACACGGAGGGAGGCAGGCTGGGTAGGTGTTTTCAAGAACACTATTTTATAAGATAGATGTC-CTTTCAAAGACTGGCTGCCTCTTCACATCAACTTCTATT-TTTCTCAATACTTTTCTCAATGTACTAAGTGTCTGTCACTTTTAGATTTAAAGGCTTAAATACCT-ACCAGTTTATGCATAGGGTTTGATTAGATTTCTCAGAGAATTTTATTTCTTAAAAAAAAAAAGATCAATGTACTCTCAGATCCTCATGAGACACAGGATTTTTCACCAATTTAAAAGAAAAGCATTTTTATCACAAAGCTGTCTGGCAACTTAATTGTCTTCAATGAAATGGTTATCCCCTATAAGGTTTGGAAAGAAGTAGAAGCGACATAGACTGGAGGGAAGGGCAGGGCATATGAGAATGTAAAGAAGGGAGGAGCGTCACATGTCTTCTTTCTACACACAGTTAGTATACAATATGCATGAAGAAATCAAAGTGTAAAATAATATAGAATATGTCAGTAGGATTAAGTTGCAATTTGTTGATGTCTTTGGGTTTAGCTATTTCATATTTTTGCTATCAATAAATGATATTTGTAAAATTCTAGTAAGT-CTGAGTTAGGTCCATATATCTGATTA-TCTTCATTCCAAGGCA------CCAGAACTAATCAAATATGTGTTAATACAAAGTGCTACAGTTTGAATATTGTGTGAACTGTCT-AACACTCTGTCAGTTGA------------ACTGCCAAGTACAGACAGCAGAAGACTCTCAGGCAACAAATTGTAGAAATGGAAAGTTCA---CAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACTGTCATCTACAAAACTGAAGTTTATGTATTTGAATACAGTTTCCTTTTATTTTCAATCACTTTGTCTATTTCCCAAATTGCAATTGTTACAAACTCTAAGAAATTGATAATTTT--TAATAGCTGAAAAATTCGAATATGCTTGTTATAACAAGTGACCCATTTTATGTATTAATTTGAATGCACAAATAGGTGGGATATAACTATCATAGTTTCAAACACAGGTGTTAGTGAAGGCTTAATTT----TCTTAAAGTTTTAGAAATCCACATTAATGGTAGTGGTTTGCTTTTCCCCAGTGGAAATAAGAA-----GTATAAAATAGTTATTTTTACCTC-GGGGTCCGTAGATACGCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCATACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCCGCAACTATGACGTCTGCCTAAAC----ACAGAAC-AGCAAACCCAGTCAGATTCCAAGA
s HiC_scaffold_1 130993303 1347 + 233722169 TCCTGGCTGAGAGTTCCGTCTGTGAAGGAGTCCAGGCAGCTCTGGGAAGATTAAGCAAATACCTCAAAACAGATAGGGAGAGGTA-----------TGTTTCTAGCTCTCCTGTTTCATCAAACACATTTTTCTCTCAAATACTT----CTTTCTCTTattgatttctgttgtttttctataCTCTT-TAAATATTCCACATGCTTGATATTTTTA-ACTTAAAGGTTTAAACATCTCATCTATTGATACA--GAGTTT------ATTCCCCAAA--attacatttcattaaaaaaaag---tcagttttCTGACTTACTCttataataaat-gattttttcttcaaatgaaaagtaaaacatatCTACCACCAAGCTATT----AGTTTAGTTGATTTCA-TGAAGCAGAT-----TTATTAAGTT----------------------------------------------------ATGT---------------GTCAGATG---------------------------------------GAACTCAAA--------------------TATAAGTAGAATTGAATTTCAATTCTCAGGTATCTACAGGTTTAGCTTATCCAT-TGTTTTCAGTCAGTAACATACGTTAGTACAATTCCTGTGAATACTAAAATGATTCCCAGTTCCTGATTGGTCTTGATTCCAAGGGAAAAGTCCCACAACTAACTAGATAT------ATTCATAATGGTA-AGGTTGGATATTGAAATTAATGTATGAACACCCAACCATCTGATGATAACCTTTGCTTGCCTAGTATAGAAAACGGAAGAGCC--ATGAAACGTTTTG-AGAATAGATTAATTCAACACAATGATACCTTGTTGCTTCAATAGTGttctttctggaaaaataaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGAGAACATTGTCATTTATAAGTTTAGAGTTACAGTATTTTAATATGGTTTCCTTATATCTG-AGCCCCATCTTCTAAT---CTAATTG-AGTTA--AGGAAGTCTGA-AATGTGACACTTTTCTTTatgtcaaaaaagttgaaatggGTTAATACCAATAAATgactcattttatatttaaactcatatgcacaaagaaatg--aaacaactagcatatttttaaaca--gttattacttaatacatattttatcctcttaaaatctttcaaaataacattaatcACGGTGTCACATATTTTCCCAGTGAGAATAAGAAcacaaatataaaacatatattcttACCCCCGGGGCCCATAGATAGATGAATTATTAGTTAACAGGAAGCTTGGAGTAAAATGTATGTATTGTCCTTTATCTCCACATTGTCCATATTGAAGTGTGTAGGGATCACTGCTGTACGTAGGATGAGGATCAGCCACTATGACATCTGCCTAAACAGTAAaagaacaagcaaacaaaaacaaattgcaaga

a score=7065
s chr3           144757916 162 + 160039680 TCAGGCAACAAATTG---TAGAAATGGAAAGTTCACAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTG----AGAGAGAAG
s HiC_scaffold_1 131346638 163 + 233722169 TCAGGTAacttatagatttaaaaatgaaaagcactca------ccttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGTGGAAGAGAGAAG

a score=6795
s chr3           144757938 163 + 160039680 GGAAAGTTCA-CAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACTGT---CATCT-ACAAAACTGAAGT
s HiC_scaffold_1 131201501 168 + 233722169 GGAAATTTAAGCAGTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAACAAAATTCAAGT

a score=6831
s chr3           144757939 162 + 160039680 GAAAGTTCA--CAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACTGT---CATCT-ACAAAACTGAAGT
s HiC_scaffold_1 131251843 168 + 233722169 GAAAATTTAAGCAGTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAACAAAATTCAAGT

a score=6962
s chr3           144757949 224 + 160039680 AGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGA-----------GAGAAGACTGTCATCTACAAAACTGAAGT------TTATGTATTTGAATACAGTTTCCTTTTATTTTCAATCACTTTGTCT--ATTTCCCAAATTGCAATTGTTACAAA
s HiC_scaffold_1 131037371 242 + 233722169 agtcatGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAGGGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGAGAAGACT-TaattcaaaggacaaaatttatcTGTTAAATATTTCAACAATACTTTATTCTGTCTCAAATATCTGTATTTGAAATGACtgcatttacatttttacaaa

a score=5652
s chr3           144757953 128 + 160039680 ATACCTTGTTGCTTCTATAGTGTTCTTTC--TAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACT
s HiC_scaffold_1 131308780 125 + 233722169 ATACCTTACGGCTT-----GAGGTCTTCCCCTGGATAAGTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACATT

a score=5911
s chr3           144757954 127 + 160039680 TACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACT
s HiC_scaffold_1 131088167 127 + 233722169 TGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaaacatt

a score=6081
s chr3           144757954 127 + 160039680 TACCTTGTTGCTTCTATAGTGTTCTTTCTAGACATGTAGAAAGGCTGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACT
s HiC_scaffold_1 131163411 127 + 233722169 TGCCTTGTGGCTTCAAGTTTATTTAACTCGCTCCTGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaacatt

a score=5938
s chr3           144758393 166 + 160039680 TAGTTATTTTTACCTCGGGGTCCGTAGATA---CGCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCATACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCCGCAACTATGACGTCTGCCTAAA
s HiC_scaffold_1 131348952 169 + 233722169 TAGTTACACTTACCCCGTGATCCATAGCCAGTTATCAAGTCATCATTCAGTAGGAAATTAGATGTGAAATGAATGTATTTTCCCTCTCTCCCACACCCTCTGTACTGGAGGGTATGTGGGTCATCTCCATCCACTCCTTTCCAATCAGTCACTATGACATTAGCCTGAA

a score=26230
s chr3           144759123 1680 + 160039680 TTTGGAAACCCACAAGAAACAGTTTAGGAGCTGGACAGGAAACCTACTTTGTCATACGATTCTCGTTTTGGCATTAAGTACTCAGGTTTTGACTTCCAGGTCATCGGGACTAATATGCTTATGTTTCTGAAATAAACTCTTCCTTGGCTGGCTTCAAACAGGTAGGTAGAGGCTTGAGTTACCATTTCCTGAGAAAATGAAAAGTGCATTGTGGTAGCAATCTCAAAACAAACTGAGCATAAATCATCTATACATAAACCAGAAGAAGCAAACGGGGGCTCCTCTTCCTCAAGTGTGTGTGCACAGAGTAACTGAAAAACTGGGATACATTTGACTGAATCTCTTGGATCCGTAAACTCATTTCCACATGCCCAAAGCTAAC--CCTGACCTTCACCTGCCCACCCCTCCAGGTGGCAGT-TGGATTGGAGATGCGACTGCAGTCTGTGCGTTAGGCATAACAGGGATGAATGTCAGAAGTCTGCAGGCAAGTGGTGCGTTAATCAAT-----------------TTTCTTACAATTGCATTGTTCAAACTCACAGGGAGCTTAAGGTTTGGTAATTATTGTATTCTATGTTAATTAAAATTGCCTTTGTTTTATTTTGAGTTACTACCCAAGTAGAGC----------------ATATAAATAAATGACCAGATTATTAAAAAAAAACACACATTTTTTTGGTAAACTTTATATATG-AATGTGTCTACACCCTTCCCCC-----------ATTCCTCCCACAACCCTCCTTTCCCTAACAAA----CTCACGACCTCATCTTCAATTATCATTTTACACATATGTATACACAGCTG----TATTTATAACCCACT------GAGTCACTCTGGCATTGCTCA---------------------ATGTCTAATAATAAATACAAATAAGACTGGTTTGCTTCTGCC--------TGCTACTTGCTACAATCCTACAAACAATTCATTCAATTTTT-----------AGAGGAACCCAGCCTTC--TGCTCCTAAGCATTGCATGGAAATGTTGCAAGGACCTATGGACAAAGTACACACGACGCAAACATTTTTATTAAA------CAAGTGCAATTAGG--AACACATCAGCTTTAAGCATGTGTCAGTTTTCCTTTAAGTTAAGATAGG---TAAGGATTTTCCAAAGTTGAGCACGTAGGAGCAGCTGGAGGAGTGGGCAGGACA------------------------------TTTGCTGTA------TAGACTCTGTAAACCAACATTACT-AAGATAAAGTGTGAGAAC-----TCTTCTTCTTCTGAAGTCTCTTACTTTACCAAG------------------------------TTAATAAATTATTAACAGGTTAAACACAGattttattatataataaaaatataaaGCTAGGCAAATTTCCATCTTGAC--TGTAGAT-AATACTGCAGACATGATGAAGATGGTTAAAGTGCCCTTTAGGAGGGTAAAACCgtg--tgtgtgagtgtgtaactgtgtgtgtgaatgtgtaactgtgtgtgtgAGTTTGGATGCGCAGGCAACAGAATTATTGACCTGACAATAAAACCCCTTCTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGGAACAGAAGGACCTGCAGCCCTGGCACCATGTTCGCAC-TGCTCCAGTGAG----AAGGAGCAGCACAGAAGGGTATTTATGTGTGTGCCTCGCTCGGGAATTTGAAATAATGTGA
s HiC_scaffold_1 130994759 1784 + 233722169 ttttaaaaagcataggAAACAATTTAAGAGCTCAGTAG----CCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCTGACAAAAGTAAAAGCAC-CTATGATAACAATTTCATATTGAAACGGATATGAA-AGTGTATATACCAACTAGAAGAAGGAAATCAGTGTctcttttcc-caaatatttttgcAAAGATCAAATGACAAA-TAGGTTGAATTTTGCTACATCTCTT-CATCTATAAAGTCATCTTTATATTCCTGTAAttgactttctgttttttatctgTCCACATCTGTAAATAGTATTATGGGTTGGAGACATGAACAAGGGTGGTG-ATGAGACATAAAGGTGATTAAGTTTGGGAGCTTGGTAGCAAGTTG---ATTACTtaatccttcccttcccttcccttcccttcccttcccttcccttcccttcc------cttcccttcccttcccttccctcccctcccctcccctcccctcccctcccttcccttcccttcccttccccagcaACTCCCTTacccatttttttgtttaattttgagataggttctttcAAA----------ATTGGctgggctgagctcaaatttgcaatctgtCTGCATCAGTctccctgaatgctggaattacagctgtgtaccaccatTCCTGACCAGAAGTTCTTACAA-------TTGATTTGT--TTAAACAAGTCTATTTTTATATCTGGTgctaatttcaaaacattttgctAGACTTATTTTGACTTACCTCATATGGAGTGTGTTTATATATGACTTTCACTAAAAAGTAATAAACAAACTA--TGGCTTCAGCTCCCAGTTATGTCACTTACTATAGAC---TGTATGAATCACTTAATCTTTctcatttatagaaaaaaactTAATAATCCTTGTTCTTGACCATCTCATGAGAACAT----AATATATATGAACATCTTACACATAGAGTG-----TCTTATATAAGTAATGCAAATAAAATTAGGATAATAAATCAGCctcaaa-atatgtaatattttctttaaaacaagtcatgatttttgtgtttttcaaagctAAGCAAGTATGAGCAACCAGGGAAATGTGTAAGATAATGAAATTAAGTGtagtttagtggcataagtgtGCTGCAGTTATTTGACTTCCTCAGAGTAACTTTATTGaagatgaaatataaaaacattttcctgtttGCTCTAAAGTTTTTTCTATTAGATAGCTGGTTGCAATAATTAGTACTTTGGTGTTTTTAATAATTCATTAAGGGAATGACTACCAGTATTAATATATAGTGAAAACATAACACTAAGCAGATATTATTCTTGACCATTTAGATAAATACTACATAAATGGTGAATACTTACAAAGCAACTTT-------GGGAAATTGTGATTGTATGAGTGTGTC----TATGTGAAAATA-gttattgag------------------------ataaaaatatg---tggataataaaattttctcttaccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTTCACCTCAGGCAAGAGATGCAAAGCTAAGAGCAGAATAACCTTCAAACTGAACATCGTAATTACACAAACTACAATTAACCttacagaa-aggaaaggagaatatTTATACATCTGTTTAACTCAGGAATTTGAATCAAggcaa

a score=5090
s chr3           144759165 148 + 160039680 CCTACTTTGTCATACGATTCTCGTTTTGGCATTAAGTACTCAGGTTTTGACTTCCAGGTCATCGGGACTAATATGCTTATGTTTCTGAAATAAACTCTTCCTTGGCTGGCTTCAAACAGGTAGGTAGAGGCTTGAGTTACCATTTCCT
s HiC_scaffold_1 131351600 145 + 233722169 CTTACCTTTTCATATGATTCTTGTTTTACTTTGCTGTAATTG---TTAGCTTTCCATGTGGCAGGTATCAATATCTGTATATTTCTGAAGAACACTCTTCTCTTGGTAGCATTGAAGAGGTAAAAAGAAGCTTCAGTTATCATTTCCT

a score=5529
s chr3           144760554 159 + 160039680 CCTTCTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGA----GGAACAGAAGGACCTG--CAGCCC
s HiC_scaffold_1 131218929 165 + 233722169 CCTCCTTACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAGCCCCACAGCAGGTGCAGGACTAAGAGGGAAGCGAAGGCTCTGAACAGCCC

a score=3839
s chr3           144760558 95 + 160039680 CTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCAC
s HiC_scaffold_1 131352558 95 + 233722169 CTCACCTTAATGTTTGGGATGAGATTCTGATTCTCAGGTACCCATGGATTAATTGCGACGAGTAATCCATCATATCCATTGTCTCGAAGCTGCAC

a score=4855
s chr3           144760558 172 + 160039680 CTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCACCATGGA---GCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGGA-ACAGAAGGACCTGCAGCCCTGGCACCATGTTCGCAC
s HiC_scaffold_1 131313332 175 + 233722169 CTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGACGGAACT-CTTCCATGATCCCATGGCTGCAC

a score=22918
s chr3           144796466 1584 + 160039680 tatatttaaGTTC------TCACATACCCATGATATTATGGAGGCATTGTTGATATGATTGGATCCATTTGTTTTTTTCTTTAAAACTAAAACAACCattaa-ttatttaccaaacatttattgaatatctactacatatcaagtttttctctaga------tccaagagctacaaaggtgaaaaaTTAATCTCAATTCTAATTGTACATCTTGCTGATGCTCTTAAGATCAAATGATGGTCCCAGGACAGAACCAGACTCAGTGTGATGCCTGCAATTCATAGGTAAAGACATTCTTGCTAGTCACTTTGTGTACTGATAAAACAACTTCAGCCAATGACAAAATCATTTGATTTTATGACCTCTTTTGACCATTTTTCTC----TACAAATT---CCTTTTGATG-------ATATAGATGAAAttctttttgagatttatttatttatttttatgtgtatgaatacacagttg-----ctgtcttcagacacaccagaagaggacattggatcgcattacagatggttatgagctactatgtggtttctgggaattgaactcaggacctctggaagagcaatcagtgctcttaaccactgagccatctcttcagcccTACAAATTACTTTCATAGTCCCTCTTGATTTCAGTT-GTAAAAGCAGGTAGCATTCTTTATTAATTGTCTTACAAATA-ATTCTACTATAAAATTGTTTGCTATTATATAAGAATAATTCCCTTTAATTGACTTATACAAATTTTATTTTGGTAATATTTTGTAAAGTGAACCTGCATCACACTGTGAAAAGG----------------GAATGGATATCTA---ATTTCCATAGTAAATGGAACAATTAGGAAATTGAATG-AGGAACTGTTAATCTTGATCTACATATAGCAGAAGAATGTTGTTAGTAACTCGGGATTTTCAACTTTGAATATGAACTTCTATATTACAAGTGTTGACAGGCAGCCTTTGAGTGTAGTAAAGTCATTCTAAAGCAAC-----AGTCAGCAAATATATACAGGGTTGCATTTTAGTGCTATTGTATCTTCTAGTTTAAAATAGAGTTAAAAATCACAGCTAACCCCCAAACTGTCATAGAGATTGCAGAAATATCAGCACCCAGTGCAGAGATACTATCTT---CTAGAGAAGTAAACTTGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCTGGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTGGCTCACTCTGATGATGTATCTATGCGCTGGAAGAGAGAGA---TATGTTCATTAATATTCCAAGGATGGGTCTCTGCCTCTGCCCTGCACC-TGTGTGGAAGCTCTGAGCAGTGCATGCCAGC-TTTAG--ACTGAGAGCCCAGATACCGTATGTGTCTGGTTATCCTATCTCACTGACTTTAA-AACA-ATATAGGAGCAATTATTGACAAACAAATGTCCAGTTTTCAAAATCACAGAAAAGCTTAATTCAGTATCATATA
s HiC_scaffold_1 130976656 1445 + 233722169 tatattcactttcacaatatcataTACACATGATATTGTCTGGGTACT-TTGATGTTATGGAGTCAAACT-TGGgtttctttaaaa---acatactcACTAACTTATTTATCAAACATTTATTAACTATTTACTACATATTAAGTACTGTTCTGGGATACTGTTCTAAGgatacagcaaagaaaaaat--ttcctGCCCTAATAGAGCATCCTGGGAAGAGTTGTAAGATCC----------------TTGAGCCAGCCTC------------------CTTAGGTATCAA--------------ACTACATGTTTTCACAAAAGTAG------CATTGTAAAAGTCTTCT-----TAGGACCTAATATGA-------TCTCAGAATAGAAATAGAACATTGTAATATTCCCcaatttatataaaaacattCTTG----TTAGCCATTTCTTTTT--GTCTAGGAATGAAACTTTGGTAGACCATTttca-ataaataagaaaac-atatttgACCTTACCA-------TTATAGACCACT------TTTC-----ATTGAA-------------------------------------------------------------AGATTAACTTTATAGTACTTTTTGATTACAGTTTATGTAAATatacaacattcattcataatcaAGCATGGAGTATATTGTATTGTAAAATTATTTGCTGT-----GTGTTTATCTATTTTCAAATGACttgtataaattataattt-----tattatatcaaatGAACTAGTAGCAtactctgaaaatatttcttcaatgCCCACAAatagatttatatatatttatactaaaaattaatgaatgtgTTATTCAAATACAGGAAacatttgttttgatttacattttgcaactcaatttt--tattaatt-gaaat----aattaggaatc---acTTTTAAATTACAG------------AGAATTTTATAATAGGTAAGTAAATTAATAACAATTACATGTTTACCAAGTTTGTAAAACATGGAATTTTAGttctaataaaatttttcatttaaaataaaaacaaaa-tcacagtgaATCCAAAAACTGTCAAGCTGAGAGCAGATATATTGGTACACAGAGCAGGAGCACTGGATTGCCATGGAGGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATTCTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAACAAACAGTTCAGGTGCATTAAAAGCACTGGGATACCTTATTGCA-CCACACTGCCTCATGTACAGGGACAACCAGAAATGCACACCAGAGTTTAGTTATGGAAATCCAAGCTATGGTTTTTGTCTAGTTATCCCCTTTT-----CTCTAAGAACAGACATAAAAACAGCTTTTTATGTTGTTACCTCC-----------TCATAGAAAAATTTAATTCAGTATCAAATA

a score=6787
s chr3           144797483 365 + 160039680 TTAAAATAGAGTTAAAAATCACAGCTAACCCCCAAACTGTCATAGAGATTGCAGAAATATCAGCACCCAGTG------------CAGAGATACTATCTTCTAGAGAAGTAAACTTGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCT-GGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTG--GCTCACTCTGATGATGTATCTATGCGCTGGAAGAGAGAGATAT---GTTCATTAA
s HiC_scaffold_1 131234384 380 + 233722169 TTAAAATAATGCTTACAACTACAACAGACAGCACTACTGACAACACCACAGCAAAAACATTAACTCCAGAAGAATTATTTTCCTCAGGATCAGGATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGACT-GCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTAGCTTCCTTTGGCACCAGGTCAGTGGTGTTAACTTGAAGAGCAGCATCAAAATTGTCTCTCAG--CTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAAATTACATCTAGTTCAGTAA

a score=6000
s chr3           144797565 279 + 160039680 ATCTTCTAGAGAAGTAAACTTGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCT-GGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTG--GCTCACTCTGATGATGTATCTATGCGCTGGAAGAGAGAGATATGTTCA
s HiC_scaffold_1 131107846 277 + 233722169 ATCTGCTACAGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATT-GCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTC--AATCATGCTTCCACTTATCCTTATGATGTATCGTTCAACT--AAGAAAAAATTACATCCA

a score=6454
s chr3           144797565 283 + 160039680 ATCTTCTAGAGAAGTAAACTTGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCT-GGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTG--GCTCACTCTGATGATGTATCTATGCGCTGGAAGAGAGAGATAT---GTTCATTAA
s HiC_scaffold_1 131184520 286 + 233722169 ATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATT-GCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTC--AATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAAATTACATCTAGTTCAGTAA

a score=5800
s chr3           144797575 294 + 160039680 GAAGTAAACTTGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCT-GGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTG--GCTCACTCTGATGATGTATCTATGCGCTGGAAGAGAGAG--ATATGTTCATTAATATTCCAAGGATGGGTCTCTG
s HiC_scaffold_1 131073025 296 + 233722169 GGGGTCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATT-GCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAG--CTCAATCATGCTTCCACTTATCCTTATGATATACTGTTGAACTAAGAAAAAAAGTTACATGTAGTTTAGTAATTGTAGcacatgtttttg

a score=5844
s chr3           144797575 294 + 160039680 GAAGTAAACTTGACAGCCTGTGCAATGTTGGAGACCTCAGAGGTGAGACCAGCTTCATTGTATGCCT-GGATTGCAATGTAGAGCTGGGTGTCATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTG--GCTCACTCTGATGATGTATCTATGCGCTGGAAGAGAGAG---ATATGTTCATTAATATTCCAAGGATGGGTCTCTG
s HiC_scaffold_1 131148245 297 + 233722169 GGGGTCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATT-GCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGATC--AATCATGCTTCCACTTATCCTTATGATATACTGTtgaactaagaaaaaaaagttacatgTAGTTTAGTAATTGTAGcacatgtttttg

a score=5203
s chr3           144797666 142 + 160039680 CATTTGCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCAGAGGATGCTGGCTCACTCTGAT
s HiC_scaffold_1 131323909 130 + 233722169 CATTTGC------AAAAAATCTGGGTGAGAATTTAAATATCTCTTTGGAGCCAGCCTGCTTAGGATGTAGCTTTGATGTATTCACCAAAATGGCATTGTTAAAATCATCTTGAATATTC------TGTAGGCTTATACTTAT

a score=4603
s chr3           144797711 75 + 160039680 TTGAGCCAGCCTCTTTAGGTATCAGACTGGAAGCATTCACTAAAGTAGCATTGTTAAAATCTTCTTGGAGACCCA
s HiC_scaffold_1 130976881 74 + 233722169 TTGAGCCAGCCTCCTTAGGTATCAAACTACATGTTTTCACAAAAGTAGCATTGTAAAAGTCTTCTTAG-GACCTA

a score=33587
s chr3           144801518 1822 + 160039680 TTCTGAGAGTAGAGGTTGTCCCTTCAAACTTGATTGTATTTGAAAACTCAACA-------ATCGTTGAATATAATTTCCCAAGTATAGAAATACTTAGAAAA------TTGTGCTTAGGAAACAAAGAATGTAGCAGAAATCTGCTAGTGTTTGTTTTAAAGTAATTTCAAGGTCGCACGGACAGGGAGCAGAAGTCAGGGACAGGACATTATTAT---TAGAGATGGTTTAAGAATTTTAAATTAAAATGACAGGAATAACTTTGTCCTATTTCAACTTTTCT--GAAGTTCAGCTTTTACATATAAAAAAATAAATGAATAATGGCCTATAGAGGACACTCCATAAATATTATTTATAAGTGAGACATTGAAGAAGCATTAGAAAAATGAAAGGTAAAGGGGTGTCTTTCATAACATTTTAAAT-TCGCCATTAGACTCACCTCTTCCCTTATCGAGAACCTTGCCAGGGGCCGTCCATGTAAGTTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAATGACCCTCCAGAGGTTACTCTGTTGAAGTCCTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAAAACACCCCCAGGCATT-----TGTGAC-TCTCGTCTT-----GTCTGTTTTTTATCTCGT--GCTGACCTTACATCTGCTCAGGGCTCAGGTAAATTGACAGCAGACACTGAAAAGTGGAAGAAAggactggatagaaggctcagtggttaagaacagtggctgtccttccagaggaccagggttcagtactcaacaccaacatggcagctcacacctgtctgtcccttcacttctcagggatctgacaccttcagatatacatataggcaaagcactaattcacataaagataaaTGTTAAAATAATAAGGGGGAGAAAGCTGGCTTAACTATCATTTTGAAATGTGATAAGTTAAAACTAATTTTTGACCCTGCTTTCTCTATCACCTTCTCATGAGATCTGTGGTGACAATACTCGTATTTCACTCA-------GCTTTAGCACTTACCACAGGGTTTGTTCCACAAGG-----TCAGGAAATGTATTTTTCAGTGGAAATGAAACAAAC-AGGAAGATTGT-AACAAATTTTGTGGAAATGTCATTTATGCTGGGCCCATTGACATGAATATTGTTTTAAATTACAAGGTTGACTCCATAATTATATAGTTGGGTGGGTGTGACTCTCTATTCAGTGTTTGATCtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtGTAtctgtctgtctatctatctgtctgtctgtctgtctgCAGGTAAGCCATATCTGGTTTAATGCTACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTCTGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTCATAATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGTGCTCATTGATGATAAGAGTTTGTCAGAGAGTAGACAGCATAGCTTAAACAC---------TAGGTCACACTGTTTTGATACAAAGCCTGGCTTGACTATGTAGTAATGCTATTTTTACAAAATGTAACTTGTAGTAGGCATTTAGTTAACATTAATAG---TTATTTTTATTTCACAACAGAAATGTATC
s HiC_scaffold_1 130980872 1511 + 233722169 TTTTGGGAGTAAAGATTGTTTGTAGAGACCCAATAGTTTTTGAAAATTCAACAGGatgcaataaatgaataaaattttgcaACTAcagaaatactttgaaaaaattttctttgct-AGGGAGAAAAGCACATAACAAAA-----CTATTgtgtattcttaatt---tttaaaatgactcaaaCTGTGAGAAGCATTCTGGCACAATAGAATCTAATACACAAGGCCAGGTTACAGTTCTGTTACTAAAC--ATAGAAATAGCTTGAATC-AGTTCATTATCTCTTGGCGTTTCAGTTTTCACGTGT-------TAAATACATAATGGTGCATAA-------CTTATAAATGTTATTCATAAATGAGACAACAGAAAATTCCTAGCAAA-TGAAAACCGATGGGATTTCTTGTATCGTATTTTAAATCTTAATATCAAACTTACCTTTTCCTTTATCAAGGACATTGCCAGAGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAATTTAGCCTGAAGGTCTGTAATTTTACTGGGTGGGAACACAGGAGTATGGTTACCCTTAGGAGGCGCTCCTGACACAATGAATGACTCTCCCAAGCTTAGTCTGCTGAAGTCCTCCAGTtcaactttttctgcatcttctttgatttcaggtCTGGGCGGGTTCATTATAATTTTGCCTACCAAACAAA-------CAAGCGGTAATATTGTAACCTTTCCTATTCCTATGTTTATTCCTTATCTTGTTAGGTGATTTTGCTGCTGTAAATGATT--GGTG--CTGATGGCAAACATTAAAGAAGGGAAG--------------------------------------------CTTTTAGTG------------------------------------------------------------------------------------------------aagcatt--------------ttaatgtttttaaattgaggAG------------------ACCAT--------ATGCCACGTTAAAACTCTGTTTTAACTTGTCTTTCTACAGGACTTGACTGAAAATTCTTTGA----GTTCTTtgcatcttagttactttgtagCTCCTGCAGCTGGCACAGTGTTGGCCACATCAGAGATGatcagtaaatttttattttattgtgaatgaAATGAACCAGGTGGGATGTGAACAAAACATGT--AATCATAGACTGTGGTAGGTCCATTAGTAGTAATGTGGGTTTGGAAAATATAGATGA----ATACTTGTGTTCTCTGAAGTAcatta---tattttcaatgtttGCCATATGCA-----------------------ATTTACCTATATAGGT-----------------TAT------------------------------TATTTGTTTCAGTGCTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGTTGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACATTGAGATATAATAATCAGTCATCAGG--------AATGG-----------------------CGATGTCAGCAGTTTGGAAGACAATATAGTACAGAGTTTAAGTACATGAACCTTGGGATGACACTATTTTGGTTTGAAGCC-------------------------------------TAATTCATGATAGGCATTTAATTAATAATAgctgatattattattatttcataaaagaaGCTTATC

a score=5362
s chr3           144801937 255 + 160039680 CTCACCTCTTCCCTTATCGAGAACCTTGCCAGGGGCCGTCCATGTAAGTTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATGGTCGCCATCAGGG------GGCGCTCCAGACACAGTAAATGACCCTCCAGAGGTTACTCTGTTGAAGTCCTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAA
s HiC_scaffold_1 131185279 249 + 233722169 CTTACCTTTTCCAACATCAAAATCCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATG---------GGTCAGTGACTGGAGTATTTGGATACCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTATCTCAGTATTCTCATC---AGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATCAAA

a score=6017
s chr3           144801937 255 + 160039680 CTCACCTCTTCCCTTATCGAGAACCTTGCCAGGGGCCGTCCATGTAAGTTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATGGTCGCCATCAGGGGGCGCTCCAGACACAGTAAATGACCCTCCAGAGGTTACTCTGTTGAAGTCCTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAA
s HiC_scaffold_1 131108606 249 + 233722169 CTTACCTTTTCCAACATCAAAATCCTTTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAAGTCTGTGATTTGACTGGGTGGGTATAGGTCAGC---GACTGCATTATTTTGATATCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTCAGTATTCTCATC---AGCTTCAGGTCTTGGTGGGTTTCCTTCGATTTCCCCTACATCAAA

a score=6269
s chr3           144801937 257 + 160039680 CTCACCTCTTCCCTTATCGAGAACCTTGCCAGGGGCCGTCCATGTAAGTTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATGGTCGCCATCAGGGGGCGC---------TCCAGACACAGTAAATGACCCTCCAGAGGTTACTCTGTTGAAGTCCTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAAA
s HiC_scaffold_1 131148991 251 + 233722169 CTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTCGAGGTCAGTGATTTGATTTGGTGGGAATG------------CTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCAC---AACCTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCATTAAAAA

a score=6269
s chr3           144801937 257 + 160039680 CTCACCTCTTCCCTTATCGAGAACCTTGCCAGGGGCCGTCCATGTAAGTTGAATATAATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGGAACACACGAGCATGGTCGCCATCAGGGGGCGC---------TCCAGACACAGTAAATGACCCTCCAGAGGTTACTCTGTTGAAGTCCTCCACTGTAGCTTCTATGGCTTCTTCTTGGACATCTGGTCTGGGTGGATTCAGTACAATTTTACCTATAAAAAAAA
s HiC_scaffold_1 131073771 251 + 233722169 CTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTTGAGGTCAGTGATTTGACTTGGTGGGAATG------------CTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCAC---AACCTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCATTAAAAA

a score=7230
s chr3           144802908 254 + 160039680 ATATCTGGTTTAATG--CTACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTCAT-----AATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGT
s HiC_scaffold_1 131025106 259 + 233722169 ATTTCTGACGTCATGAATTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaagga-agaaattattatcaaa--aagaaaagatg--aatttatgcattttat

a score=7152
s chr3           144802921 180 + 160039680 TGCTACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131109308 183 + 233722169 TGGCACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTCTCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCT

a score=6242
s chr3           144802924 177 + 160039680 TACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTT---CTTCTGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131292092 180 + 233722169 TACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTTCCCTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCT

a score=8583
s chr3           144802924 238 + 160039680 TACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTCTGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTCATAATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGT
s HiC_scaffold_1 131150087 233 + 233722169 TACTCACCATTCTCAACCAAACCTGGTACA---AAGGCACCTCTATTCCGTGGTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAAT--TATTATGAATTCAAGAAAGAATTCATACATTTTGT

a score=8583
s chr3           144802924 238 + 160039680 TACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTCTGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCTTCATAATGAAGCACAGTGATTAGTCACATAGTAAGTTAAAATGAAAATTGATGCTGTTTGT
s HiC_scaffold_1 131074868 233 + 233722169 TACTCACCATTCTCAACCAAACCTGGTACA---AAGGCACCTCTATTCCGTGGTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAAT--TATTATGAATTCAAGAAAAAACTCATACATTTTGT

a score=8094
s chr3           144802925 176 + 160039680 ACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131185999 179 + 233722169 ACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCT

a score=7737
s chr3           144802925 176 + 160039680 ACTCACCATTTTCCACATAGCCAGGTATATATAAAGACTTGTTCTTC---TGTCTTAAGCTTAGTCTGGCTTTGTTTTTTCTTGCCTGGACACGCACTTTTAGGCTGTATCTACCATTTCCATGATAATCTGTAAAGTATCTTGTGTAGATGCCATCATTTTTAACAGTATCAGCACCT
s HiC_scaffold_1 131236338 179 + 233722169 ACTCACCGTCCACTACCCAGCCTGGTATATATGCGGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCT

a score=39586
s chr3           144805466 1185 + 160039680 GTTCCATGGGAAGCATGAAACTGATAACCAACTTTAACCAAAATACATGTGCTTTTGTCTGGGCTTTCTTTGTCAAGATAACCAAGTAAGAAGTTTTAAAGAC---------------AGTATTACTCAAATA-GATTCATAACTATTTTAA--AAATATAGACTACCAAGTTATAGAATCCTATAGGAGAATTTAAA--TTCATGGTA-TCGATACAGGCTCCCATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGACTTGGTACCCGT------GATGCTGTAAGTCCAAGTACCTGTCTG------AAAAAATTCTCTTTAAGAACTTTGCTAAGGATTTCTTGCTACTTGGAAAAATAAAATTGAAAAACTTGGGGTGGTGAATATGGAACTCACGCCTTACGCATGGTAAACAACTGTCCTACTAAGAGTAGAGACCTACATTGCTAACCTCAATACTGATTTTAATGGGTGATTGTTAAAAATTAATAGATAATATAGATTTGAACACTTAGATATTCAACTTAATTTTTAGTGAAAACTATTCTTTCATTGATCTTAATACTGATAATGTAGCATGTCATTATTTTATTTTTACAGCACAAGTATGGATTAATAAAAC----ATGGTGAAAAGAATAGACTTACCTCTGCAGTGCCCGGTATTTGAAGTCGAGCAGACCGGATGTTTAGTTCATCATCTTGGAAATCTGAGGTTATATATTTTTTTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTTGTACCGTCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCTGACATTGAAGGCTTTGCTCTCCAACTGTAACAGAAAGAAAAAACAAACACATAAAACCTATTTGTTATCTTAAGTAGTGGAATTTTCTAATTTAGACAGTTCAAAGTAATTTAAAAATCATAAATAAGATTTAGTTGTAATGATGATTTAAAACATTCTTCAAACCACA
s HiC_scaffold_1 130982704 1119 + 233722169 GTTccacagaaaaagtaaaattgttcATGACATTTAAAGAAGGTAATTATTCTTATGTCTGTGCTTT----GTCAAGATAActaagtgaaaaattttaaaaaattatagctaaatgtaattttcattaaaatatgattAATCAGCATTTACAGGAAATATTCACTTCTAAATCACGGAATCCTGTGGGAGGATTTAAAATTCAATAGAAGTGGATGCAGATTCTCATTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGGTAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaaattaaaaaaaagactgtaaaagcttttgtaatattttcctactctt----------aaattta---------------gaatataaaatt----------------------att-------------tagaaatttaaaatgat--------------ttttcatatttgatt-ttacaaACTGGTAAATAGtgca-attttattacttttattt----ctctgctttta-tGACAGATGATGTGTTGCT-ATTTCAACATTGACTGTATGagatgttgt--ttttatttttttatcatagGAATTGACTAATAAAacgatgaaaataaaaaaaatggatcTACCTCTGCAATGCCTGGTATTCGAAGTCGGGCAGAATGAATATTTAgcttatcttctttgaagtctgaggtttcatatatttttccttttggatcCTGAAGAATAATTTCTGGCTTCCTTCTTGTCCAGGTGACAACAAAGAAAGTGTCATTTCCGATTGTACTATCCACAACCACTGTACCATTTACCCATTTATTCCTTGTAATGTTAAAAGCTTTGCTTTCCAACtattaca-----aatgaaaacacacataAAATGCACTTATTATTGTAGGAAATGGGATTTTAAAGTTT----AGTTCatagtaattttaaattta-----aaattttaattaaagtaa-GAATTAAAGGATTTTCCAaacaata

a score=4157
s chr3           144805666 226 + 160039680 TCCCATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGG--GCTGTGCTCTGACTC----ATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGT
s HiC_scaffold_1 131332528 226 + 233722169 TCTTGTTACCTGCTCCGTCATCAAAGAGTTTCAGCATAACAGGATCTCCAGACCCTGGCTCAATTATAGCAGTGACAGTGGCATTAAGAATGGGATAAAACCCTCTTCTCACATTTGCATAAATTGTCACAGGATCAGGAAAATGGACGCTGTCTTTTTCCACAAagacttccacagtggctggggg------CACAGCAGAGCTAGAGGCGCGGGAGGCTACTGTCACCGT

a score=6453
s chr3           144805670 276 + 160039680 ATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGA------CTTGGTACCCGTGATG-CTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131152085 279 + 233722169 ATTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCGCATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTCGCACTCACTGTGATTGGAGGCACAGCAGCTTTTGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGAGATTGCTTTGG----CTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAA

a score=6750
s chr3           144805670 276 + 160039680 ATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGA------CTTGGTACCCGTGATG-CTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131076887 279 + 233722169 ATTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCACATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTAGCACTCACTGTGATTGGAGGCACAGCAGCATTCGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGGGATTGCTTTGG----CTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAA

a score=7552
s chr3           144805670 276 + 160039680 ATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGT-----------AATCAACTGAGACTTGGTACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131187890 279 + 233722169 ATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTG--------AAGATTGTAAATCCATGTGCCCACCTGAAA

a score=7731
s chr3           144805670 276 + 160039680 ATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGT-----------AATCAACTGAGACTTGGTACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131238343 279 + 233722169 ATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTCGGGAAGGTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTG--------AAGATTGTAAATCCATGTGCCCACCTGAAA

a score=6942
s chr3           144805670 224 + 160039680 ATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAA
s HiC_scaffold_1 131111196 224 + 233722169 ATGACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGA

a score=8164
s chr3           144805670 276 + 160039680 ATTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGACTTGG---TACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAA
s HiC_scaffold_1 131026421 279 + 233722169 ATTACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTGCTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCTAAAA

a score=7387
s chr3           144805671 278 + 160039680 TTACCTGCCCCATTGTCCCATAGCTCCAGGGTGACTTGATGTCCATGTTCAGCTTCTATGATGGCTGTGACATTGGCTCCTAGAACAGGCAAAAACCCTTGGCTGACCCGTACATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTAGCCAGGAGTGGTTCCATGGTGGGACTTCTTGCTCGAGTGGTCACTGTCATTGTAATCAACTGAGACTTGGTACCCGTGATGCTGTAAGTCCAAGTACCTGTCTGAAAAAA
s HiC_scaffold_1 131293445 275 + 233722169 TTACCTGCTCCATTATCCAGTAGTTCCAAGGTGACTGTTTTCCCATTTGCCGATTCAATCACAGCTGTGACCTGGGCCCCGAGAATTGGTGAAGCTCCTTGGTGAATATTTGCATAAACTATCATAGGACTGGGGAATTTGCCTGTGTCCTTGTTCATTTTGGAGGTCACTGTAATCGGAGGCAGGGTAGCACTTGATGCACGTGAGGTGACTGTCAGGGTGAGAGTTTGTGAGCTCGCTTGC---AGACTGTATTTCCAAATGCCAACCTGACCAAA

a score=5436
s chr3           144806275 269 + 160039680 ACTTACCTCTGCAGTGCCCGGTAT-TTGAAGTCGAGCAGACCGGATGTTTAGTTCATCATCTTG---GAAATCTGAGGTTATATATTTTTTTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTTGTACCGTCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCTGACATTGAAGGCTTTGCTCTCCAACTGT---AACAGA---AAGAAAAAACAAACAC--ATAAAACCTATT
s HiC_scaffold_1 131239122 268 + 233722169 ACTCACCTTTGCATCTCCTGGTATGCTGAGATAGGCCATTCGGGAAA-------CAGTGTCCTGAGTGAAATTTGCTGTGAG------TGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatatatttaaaaaagaatgaatacagaTAAGACCAATT

a score=4999
s chr3           144806275 269 + 160039680 ACTTACCTCTGCAGTGCCCGGTATTTGAAGTCGAGCAGACCGGATGTTTAGTTCATCATCTTG---GAAATCTGAGGTTATATATTTTTTTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTTGTACCGTCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCTGACATTGAAGGCTTTGCTCTCCAACTG--TAACAGAAAGAAAAAACAA------ACACATAAAACCTATT
s HiC_scaffold_1 131188673 268 + 233722169 ACTTACCTGTGCATCTCCTGGTATGCTGAGATAGGCCATTCG------CGAATCAGTGTCCTGAGTGAAATTTGCTGTGAG------TGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGTTTAaaggtatttaaaaatgaatgaatacagaTAAGACCAATT

a score=9001
s chr3           144806753 240 + 160039680 TAAAAATGAGATGTGTACATCTTTACTGTGGGTTTGAATGGTACTTTGCAACTGAGCCAACACTTTGGTCTTGTATCTGAGTAACCATGGAGACAGAAGCTTGTGCTTAGTGCGATGAAAAGAGAGTGGATGAAGAGGGAATGAAAGTGGCAGGGACTGAACAATTTAAGATGCTGTCATGTGAAGAAGCTGAGAAAGAGGAACGAAGGGAACTTGAAGGTCATGGAAGAGACAAAAAGT
s HiC_scaffold_1 130984895 231 + 233722169 TAAAACAGAGGTGTCTAAATCTTCACTGTAGGATTGAATGGTGTTTTGGAATTAAGCAATAATTTTGAACTTGG---TGAGTAACCATAGGGAAAGAATGTTCTGTTTAGTGGTATTGACAAAAAGTAGATGAGCAGTGAATGAAGATAGAAAATACTGAATAACTTGAGAAGTTGGTACATGaagaagt--agagagagaaaagaaactaattggaaagac----aaaagacaaataat

a score=69770
s chr3           144807164 4091 + 160039680 [encoded data, 4594 characters]
s HiC_scaffold_1 130983874 4226 + 233722169 [encoded data, 4594 characters]

a score=4114
s chr3           144808564 167 + 160039680 TTCCGAAGTTGT-ACCTGTCATGTCTGACAGAGTCTCCAGTTCTCGGGCAGCAGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACTTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACCGGAAG
s HiC_scaffold_1 131338108 168 + 233722169 TTTAGAAACTGTTACCTGTACGATGTGCTAATTCCTCCACTTTTTCGGCCTCAGAGGACCCCATGGCAATGGAATGAATGGTTGCACCACTGCTGAGCACGGTGGGCAAGCAGTTGCTGATGTGTTGGTCAGCGCCGCTGGTCACTAATATCATCACAGAGCCAGAAG

a score=6679
s chr3           144808576 150 + 160039680 ACCTGTCATGTCTGACAGAGTCTCCAGTTCTCGGGCAGCAGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACTTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131297779 150 + 233722169 ACCTGTCATTTGAGAcagctgctccagctctgcagctgcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCC

a score=4209
s chr3           144808600 126 + 160039680 CAGTTCTCGGGCAGCAGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACTTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131243020 126 + 233722169 CACTGCTGGATCTGCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCC

a score=5064
s chr3           144808611 115 + 160039680 CAGCAGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACTTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131032272 115 + 233722169 CAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCC

a score=4223
s chr3           144808613 113 + 160039680 GCAGAAGGCCCCAGAGCGATGGTGTGGATGATGGCACCGCTGCGAGAGACGGCCTCAAAGCAGGAACTTATTCCATTATCTTCCCCATCTGTCAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131192733 113 + 233722169 GCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCC

a score=5459
s chr3           144810641 229 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGC--CTGTTGGGGGAGGTTTGCGGTG---ATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTC
s HiC_scaffold_1 131300615 229 + 233722169 TCACAGTAAATGCTGATTGAAGGCCGGAGCAGATGGATGTCCCTCCTGAAGAAACTGTTGGTAAGTGTTTGGTGAGTGCATCTCT-----GTCTGCATCACTCTTTATCTGGACAAGTTCACTTCGTACTTGGGCGCTACCGTCAAATGTTACCAGCCCAACCCAGGACCTGTCCTCCACCGTCTGCAGCAGGAAAAACTTGGCCGCTTGATTCATGCGGTCAAGGCGGTTATC

a score=6600
s chr3           144810641 227 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGCCTGTTGGGGGAGGTTTGCGGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCT
s HiC_scaffold_1 131032621 227 + 233722169 TTACCTGAAGAGCAGATTCGATTCCAGAGCAGATAGAAATTCCTCCTGAAGCTTCTGTAGGTAAGCTCTCTAgaagttttcttctttcattgtAGCTAGTTACTTGGACTAGCTTACTTTTGATGTGAGCGGTACTATCATAAGCAACTATTCCCACCCAGGAACCATTTTCAACAGTTTGAAGCAGGAAAATTTTAGCTGCTTGGTTCATTCGATTTAGCCGGTTT

a score=7526
s chr3           144810641 378 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGCCTGTTGGGGGAGGTT------TGCGGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTCCTG--TAAGAGAAAGATGCATGTACAATAGCAGAGTCTCTTCCAACCT-----TGACTGATTAATGAACAATAAAGGCATCCATGGACCA--TAGAACATGGTAATAATTA-----ATGGACATTAAAATTTTAACTCTTTCATCTAATTAAAAAGTTTAAGA
s HiC_scaffold_1 131244757 390 + 233722169 TCACCTCAAATGCTTTTGCAATCCCACTGCAGATGGAAGTTCCTCCGTTAGCATATGTAGGCAAGCTCTTCACTAGGGTG-TCTCTT-----TCAGTATTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAATTTTGCTGCTTGATTCATTCGAGTGAGGCGG-CTACCAGCCTGAATGAAAAGCGAAAG-AAAACAACCAAGTAGTTTTCAACTGGAAGATAACAGCATCACACATAATGagtatatacatgtaccaataaGAATTTTTCAATAATAACTGCTATGACTGGTAAAAATTGTCCTCTCTTTTCAACTGATAATGTAGAAAA

a score=7969
s chr3           144810641 224 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGCCTGT-TGGGGGAGGTTTGC----GGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGG
s HiC_scaffold_1 131194403 224 + 233722169 TCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTT-----TCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATTCGAATGAGGCGG

a score=7685
s chr3           144810641 242 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGCCTGT-TGGGGGAGGTTTGC----GGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTC---TTCCTGTAAGAGAAAG
s HiC_scaffold_1 131081415 245 + 233722169 TTACCTCAAATGCTTTTTCAATCCCAAGGCAGATGGAAGTTCCTCCGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTT-----TCACTGTTGCTTCTTATTTGTATTAGCTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATCCCTACCCAGGACCCATTTTCCACAATCTGCTGCAGGAAAAGTTTTGCTGCTTGATTCATTCGATTCAGCCGGTCACTGCCctgaatgaaaaag

a score=7601
s chr3           144810641 378 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGCCTGT-TGGGGGAGGTTTGC----GGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTCCTGTAAGAGAAAGATGCATGTACAATAGCAGAGTCTCTTCCAACCT-----TGACTGATTAATGAACAATAAAGGCATCCATGGACCATAGAACAT-----GGTAATAATTA--ATGGACATTAAAATTTTAACTCTTTCATCTAATTAAAAAGTTTAAGA
s HiC_scaffold_1 131118550 381 + 233722169 TCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTTTT-----TCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCGG-ctatcaaaaagcaaaag--------aaaacaaccaagtAGTTTTCAACTGGAAGATAATAGCATCACACATAATGAGTATATACATTTACCAATAAGAATTTTTCAATAATAACTACTATGACTGATaaaaattgttctcttttttcaacTGATAATGTTGAAAA

a score=7754
s chr3           144810641 229 + 160039680 TCACCTGAAATCCTGCCTGGAGTCCATGGCAAATTGAAGTTCCACCAGTAGCCTGTTGGGGGAGGTTT------GCGGTGATCTTTTGGTAGTCACTACTACTCGTTATTTTTATTAGATAATTTTGGATGTGGGCAGCGCTGTCAAATGTGACTAATCCAACCATAGACTCCTTTTCCACAATTTGAGTTAAGTACAGTTCTGCTGCTTGATTCATTCGAATAAGACGGTCTTC
s HiC_scaffold_1 131156838 229 + 233722169 TTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGT-ATCTCTT-----TCGCTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATTCGAGTGAGGCGTTTATC

a score=20625
s chr3           144813300 545 + 160039680 acacatatatatatatttacatatacacatacat-tTGATCATGAATATATATAGGTTT------------ATATGTTTAGTAGAACTAAACCTCAGAATAAATTATAGTTCTGTATTTAGCTTAAATACTTAATTTAAGAAATCCAGCATATCGTT-TCTTACTTTGTCCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAACCTGATATTGTAATAATTTATAAGGGATCACCTTCTTTCTTTTCAAATGCAGAGTTAGTTGTCACATGCATCCTGAAGAGGATTTGTCTCCTGACAAGCCGG------TTTGTATGTAGATACTTTCCCGTCCATTTTACACGCTTGGAGG
s HiC_scaffold_1 130988334 545 + 233722169 acacttatttttattttaacatattctAGTACTTATCTAAAACTATTGTGTAGAAATTTGCCACAACAGAAATGTGTT------AGCCAAACCTaagattaaattatattt------ttcatttaaatatgtaatttaagaGAGTAAGCAAAAAACTGTCTTACTGTAGACATGCTTCCAGATTTATCAAGTACCAAGCAGACTACTCGCTGTTGGGACTTGAGCAGTGAAAATGTAGGATGAGGTGGTGGATTTGTTCCTTTCAGAGGAATTGCATTCTGAAAATCAGGAGATTCACTGATTACATCCCATGTGCTTCTGTGATTgcacattttgttttgaaggttTGGAGCTTCTCTATTGTGTGTTTTTGCTGTGCAAAATTCAACCAcctggaaa--aaaataattagaacacAATATTGTGGTAA-GTGTGAGGCATCACCTGC---CTTTCCAAATATGTAGCTAGCTGCCATATGTACCC--AACACATTTTATCTCCCGGAGGTCCAGAATTACATTGTAATCAAATATTGTGACACACATTTTGCATATTTGAAGG

a score=10448
s chr3           144813445 611 + 160039680 CTTACTTTGTCCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAACATAAATC---------------------AATTA--------------------------AAACCTGATATTGTAATAATTTATAAGGGATCACCTTCTTTCTTTTCAAAT-----------------------GCAGAGTTAGTTG---TCACATGCATCCTGAAGAGGAT--TTG-TCTCCTGACAAG-------------CCGGTTTGTATGT--AGATACTTTCCCGTCCATT-----TTACACGCTTGG----AGGGTCATTGAGGAAAGAAGTAGAAAGC---------------------------------ACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACTCGTGGACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCT
s HiC_scaffold_1 131034837 730 + 233722169 CTTACCTT---CATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGG------TGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAAGGTTAATatgataaaagattttaaaattatcttgtcCATTTAAAAATCTATCTGTAAACCTGAAAGAATAGCAATTTATTCTG--TAATTTTATTGTTTATCGAATAGAATATGATTATTCAATTAATAGTAGAGTAAGGTACATTTTCAATAATtctgataataataatagctatacTGACTGGTTACTATTGGCTCCCAGTTAATacattaaaaaactttt---tttattaatagtaacatttttaatCTCAGGTTTCCTAAGTAGATATGTTAAAAACATGATTACAAATTCTGAAAACAAAGATTGGCATACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTCTAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCT

a score=8781
s chr3           144813446 238 + 160039680 TTACTTTGTCCATGCTTCCAGATTTATCCAGCACCAAGCACACCACT----CGCC-TTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGA---AAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAA
s HiC_scaffold_1 131343052 238 + 233722169 tTACCTCTGCCATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCCATCCTGGAC---AACA--GAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGG---GATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAA

a score=10304
s chr3           144813455 256 + 160039680 CCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAACCTGATATTGT
s HiC_scaffold_1 131301496 244 + 233722169 CCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGGTTTGTTGT------CATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAAT---TGTCAATGAAA---TGATATAGT

a score=9748
s chr3           144813455 245 + 160039680 CCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAA
s HiC_scaffold_1 131085626 239 + 233722169 CCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTG-----GTGTCTC-CATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaa

a score=10571
s chr3           144813455 245 + 160039680 CCATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAA
s HiC_scaffold_1 131160958 239 + 233722169 CCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGG------TAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaa

a score=9099
s chr3           144813456 228 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAA
s HiC_scaffold_1 131249613 222 + 233722169 CATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTG-----GTGTCTC-CATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAA

a score=8480
s chr3           144813456 600 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCACACCACTCGCCTTCTGGACTTGAGCAATGAAAATGTAGGTGGAGGAGGCGCTTCTGTTCCTCTCATGGGAGGGGAATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGCGATTGCACATTTTGTTTTGTAGGTTTGGGGCTTCTGCATTGTGGTTATTTTCTGTGCAAAATTCAACCACCTGAAACATAAATCAATTAAAA----------------CCTGATATTGTAATA---ATTTATAA------------------------------------------------------------GGGATCACCTTCTTTCTTTTCAAATG--------------------------CAGAGTTAGT-------------TGTCACATGCATC--CTGAAGAG-------------GATTTGTCTCCTGACAAGCCGG-------TTTGTATGTAGATACTTT-------------------CCCGTCCATTTTACACGCTTGG-----------------------------------------------------------------------AGGGTCATTGA------------GGAAAGAAGTAGAAAGCACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACTCGTGGACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCT
s HiC_scaffold_1 131199264 832 + 233722169 CATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTG-----GTGTCTC-CATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaatagaaaagtaatttttattatacCATACATTAAAATACTTACTTGTAAACCTCAAAAGCTAAACTATGTCCTGCAAATATGCTTTAATTGAATGAAATGTAATTAATGGGAATCAGTGTTATACT----AAATGAAACATAGCAAAATGGTAATAGTAGGCAACATTAGTCAAGTGCTTACAATATTTCATACAGTGACTGAAGaattttatataatacatttaatCTTCCTGTGATCCagatacaaattttaaatcaGATATGTTGGGGAAGAGGGTGTAACACTATGAACACAATACATGCCTAGCATATGCAAGACTGTGGGTTCAGTCACCAGCaccacaataaaagaaaataatcaattaaataaaatcagatatGGCCTTTGATTATAAATCTCAGGAGCCAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTCTAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCT

a score=5589
s chr3           144813831 225 + 160039680 TACACGCTTGGA----GGGTCATTGAGGAAAGAAGTAGAAAGCACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACTCGTGGACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCT
s HiC_scaffold_1 131086222 227 + 233722169 TATATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACA--TACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCT

a score=5600
s chr3           144813831 225 + 160039680 TACACGCTTGGA----GGGTCATTGAGGAAAGAAGTAGAAAGCACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACTCGTGGACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCT
s HiC_scaffold_1 131161557 227 + 233722169 taTATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACA--TACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCT

a score=12516
s chr3           144813850 226 + 160039680 TGAGGAAAGAAGTAGAAAGCACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACTCGTGG---ACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCTATGATAAAAGAATTGGATTA
s HiC_scaffold_1 130991880 229 + 233722169 TGAGCATAGAACTGGAAGGCACTTACTGAATCGAGGCTTTGCATGAACATTATCGAGTCTCTTGCGGTCTGGGATTTGTCTGGGATAAATGTGCATTTTGCTTCGTAAAGTCCTGTCTTGGAGTCACGTCTACACGGCCTTGTTATACAGCTGCCTCCCTTGCATTCATTGAAAACCACATTCATACCAGTAATGTGAGTGGAGCATCTGTGATGAAAGAATCAGATTA

a score=6362
s chr3           144813852 204 + 160039680 AGGAAAGAAGTAGAAAGCACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACTCGTGGACCACCTTCTTGCCTGTGATGCTGGCGGAGCACCT
s HiC_scaffold_1 131250239 204 + 233722169 AGGAGCAAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTCTAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCT

a score=4950
s chr3           144813853 163 + 160039680 GGAAAGAAGTAGAAAGCACTTACAGAATTGAGGTTTTGCATGAACATTATGGAGGCCCCAGCTGTCTGTATTTTGTCTGGGATAAATGTACATTTGGGTTCATACAGCCGTGTCTTCGAGTCACGCCGGCACGCCCTTGTCACACAGCTGCCTCTCTGACACT
s HiC_scaffold_1 131304183 163 + 233722169 ggagaaaaaaataaggtaCTTACAGACTCAATACTTTGTGCAAACATTATGGAAGCCTTTGCAATCTGTTGCTTCTGTGGTATCAGCACACATTCTTTATTATACAGTCCTGTTAATTTGTTGAGTCTGCATGGTCCAACTGTACAACTGCCTCCCTGGCACT

a score=33869
s chr3           144815841 1494 + 160039680 TCTCAGCTGA----TCCTTTTGTGCACGGGTCCAGGCAGCTCTG--CAGATCACACACACAGAGGGAGGCAAGCTGGGTAGG---TGTTTTCAAGAACTCTATTTTATAAGATAGATGTC-CTTTCAAAGACTGGCTACCTCTTCACATCAACTTCTATT-TTTCTCAATACTTTTCTCAATGTACTAAGTGTCTGTCACTTTTAGATTTAAAGGCTTAAATACCT-ACAAGTTTATGCATATGGTTTGATTAGATTTCTCAGAGaattttatttcttaaaaaaataaaataaaatCAATGTACTCACGTATCCTCATGAAACATATGAATTTTTCACTAATTTAAAAGTAAAGTGTTTTTTTTTTTTATCACAAAGCTGTCTAGTAACTTAATTGACTTCAATGAAGTAGTTGTTTCCTACAATGTTTGGAAAGAAGTAGAAGAGGCATAGACTGGAGGGAGGGGCAGGGCATAATAGAATGTAAAGAAGGGAGGAGCATCACATGTCTTCTTTCTACACAGAGTTAGTATACAATATGCATGAAGAAATCAAAGTGTAAAATAATATTGGAAATGTCGGTAGGATTAAGTTGCAATTTGTTGATGTCTTTGGACTTAGCTATTACATTTTTCTGCTATCAATAAATGATAT---TTGAAAAAAATCCGGTGAGTACTGAGTTAGGTCCCTATATTTGATTA-TCTTCATTCCAAGGCAGGGACACCAGAACTAATTGAATATGT--ATTAGTACAAAATGGTACAGTGTCAATACTGTGTGAACTGTCTAAACATCCTGTCA----CTTGAACTGCCCAGAACAGACAGCAGAAGACCCTCAGGCAAGAAA---TTGTAGAATTGGAAAATTCA---CAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACTGTCATCTACAAAACTGAAGTTTAAGTATTTGAATACAGTTTCCTTTTATTTTTAATCGCTTTGTCTATTTCCCAAATTGAAATCGTTACAAACTCTAAGAAATTGATAACTTTTAATA-GTTGAAAAATTTGAATATGCTTGTTAT-AACAAGTGACCCGTTTTATGTATTAATTTGAATGCACAAATAGGTGGGATATAACTATCATAGTTTCAAACGCAGGTGTTAGTGAAGGCTTAATTT----TCTTAAAGTCTTAGAAATCCACATTAAT-GTAGTGGTTTGCTTTTCCCCAGTGGAAATAAGAA-----GTATAAAGTAGTTATTTTTACCTC-GGGGTCCATAGATACGCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCATACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCCGCAACTATGACGTCTGCCTAAAGTGCAGAA----CAGCAAACCCAGTCAGATTCCAAAA
s HiC_scaffold_1 130993303 1347 + 233722169 TCCTGGCTGAGAGTTCCGTCTGTGAAGGAGTCCAGGCAGCTCTGGGAAGATTAAGCAAATACCTCAAAACAGATAGGGAGAGGTATGTTTCTAGCTCTCCTGTTTCATCAAACACATTTTTCTCTCAAATACTT----CTTTCTCTTattgatttctgttgtttttctataCTCTT-TAAATATTCCACATGCTTGATATTTTTA-ACTTAAAGGTTTAAACATCTCATCTATTGATACAGA--GTTT------ATTCCCCAAA--attacatttcattaaaaaa-------aagtcagttttCTGACTTACTCttat--aataaatgattttttcttcaaatgaaaagtaaaacatatCT-------ACCACCAAGCTAT----TAGTTTAGTTGATTTCA-TGAAG----------------------------------------------------------------------------------------------------------------CAGATTTATTAAGTTATGTGTCAGATGGAACTCAAATATAA-------------------GTAGAATTGAATTTCAATTCTCAGGTATCTACAGGTTTAGCTTATCCATTGTTTT-----CAGTCAGTAACATACGTTAGTACAATTCCTGTGAATACTAAAATGATTCCCAGTTCCTGATTGGTCTTGATTCCAAGGGAAAAGTCCCACAACTAACTAGATATATTCATAATGGTAAGGTTGGATATTGAAATTAATGTATGAAC-ACCCAACCATCTGATGATAACCTTTGCTTGCCTAGTATAGAAAACGGAAGAGCC------ATGAAACGTTTTGAGAATAGATTAATTCAACACAATGATACCTTGTTGCTTCAATAGTGttctttctggaaaaataaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGAGAACATTGTCATTTATAAGTTTAGAGTTACAGTATTTTAATATGGTTTCCTTATATCTG----AGCCCCATCTTCTAATCTAATTGA----GTTAAGGAAGTCTGAAATGTGACACTTTTCTTTatgtcaaaaaagttgaaatggGTTAATACCAATAAATgactcattttatatttaaactcatatgcacaaagaaatg--aaacaactagcatatttttaaac--agttattacttaatacatattttatcctcttaaaatctttcaaaataacattaatcACGGTGTCACATATTTTCCCAGTGAGAATAAGAAcacaaatataaaacatatattcttACCCCCGGGGCCCATAGATAGATGAATTATTAGTTAACAGGAAGCTTGGAGTAAAATGTATGTATTGTCCTTTATCTCCACATTGTCCATATTGAAGTGTGTAGGGATCACTGCTGTACGTAGGATGAGGATCAGCCACTATGACATCTGCCTAAACAGTAAaagaacaagcaaacaaaaacaaattgcaaga

a score=6965
s chr3           144816668 177 + 160039680 GAAATTGTAGAATTGGAAAATTCA--CAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACTGT---CATCT-ACAAAACTGAAGT
s HiC_scaffold_1 131251831 180 + 233722169 GAGGTTATATAA---GAAAATTTAAGCAGTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAACAAAATTCAAGT

a score=6354
s chr3           144816670 152 + 160039680 AATTGTAGAATTGGAAAATTCACAG---------TGA--------TACCTTGTTGCTTCTATAGTGTTCTTTCTAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTG----AGAGAGAAG
s HiC_scaffold_1 131346628 173 + 233722169 AATTCTAGAATCAGGTAacttatagatttaaaaatgaaaagcactcaccttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGTGGAAGAGAGAAG

a score=6803
s chr3           144816683 162 + 160039680 GAAAATTCA--CAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACTGT---CATCT-ACAAAACTGAAGT
s HiC_scaffold_1 131201501 168 + 233722169 GGAAATTTAAGCAGTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAACAAAATTCAAGT

a score=7286
s chr3           144816684 233 + 160039680 AAAATTCACAGTGATACCTTGTTGCTTCTATAGTGTTCTTTCTAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGA-----------GAGAAGACTGTCATCTACAAAACTGAAGT------TTAAGTATTTGAATACAGTTTCCTTTTATTTTTAATCGCTTTGTCT--ATTTCCCAAATTGAAATCGTTACAAA
s HiC_scaffold_1 131037364 249 + 233722169 aaaattta--gtcatGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAGGGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGAGAAGACT-TaattcaaaggacaaaatttatcTGTTAAATATTTCAACAATACTTTATTCTGTCTCAAATATCTGTATTTGAAATGACtgcatttacatttttacaaa

a score=5438
s chr3           144816697 128 + 160039680 ATACCTTGTTGCTTCTATAGTGTTCTTTC--TAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACT
s HiC_scaffold_1 131308780 125 + 233722169 ATACCTTACGGCTT-----GAGGTCTTCCCCTGGATAAGTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACATT

a score=5743
s chr3           144816698 127 + 160039680 TACCTTGTTGCTTCTATAGTGTT---CTTTCTAGAAATGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACT
s HiC_scaffold_1 131088167 127 + 233722169 TGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCG---TGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaaacatt

a score=5762
s chr3           144816732 93 + 160039680 TGTAGAAAGGCCGGTCCACGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAAGACT
s HiC_scaffold_1 131163445 93 + 233722169 TGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaacatt

a score=6143
s chr3           144817136 174 + 160039680 TAGTTATTTTTACCTCGGGGTCCATAGATA---CGCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCATACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCCGCAACTATGACGTCTGCCTAAAGTGCAGAA
s HiC_scaffold_1 131348952 177 + 233722169 TAGTTACACTTACCCCGTGATCCATAGCCAGTTATCAAGTCATCATTCAGTAGGAAATTAGATGTGAAATGAATGTATTTTCCCTCTCTCCCACACCCTCTGTACTGGAGGGTATGTGGGTCATCTCCATCCACTCCTTTCCAATCAGTCACTATGACATTAGCCTGAATTGAAAGA

a score=28463
s chr3           144817875 1730 + 160039680 TTTGGAAACCCACAAGAAACAGTTTAGGAGCTGGACAGGAAACCTACTTTGTCGTACGATTCTCGTTTTGGCATTAAGTACTCAGATTTTGACTTCCAGGTCATCGGGACTAATATGCTTATGTTCCTGAAATAAACTCTTCCTTGGCTGGCTTCAAACAGGTAGGTAGAAGCTTGAGTTACCATTTCCTGAGAAAATGAAAAGTGCATTGTGGTAGCAATCTCGAAACAAACTGAGCATAAATCATCTATACATAAACCAGAAGAAGCAAACGGAGGCTCCTCTTCCTCAAGTGTGTGTGCACAGAGTAACTGAAAAACTGGGATACATTTAACTGAATCTCTTGGATCCGTAAACTCATTTCCACATGCCCAAAGCTAAC--CCTGACCTTCACCTGCCCACCCCTCCAGGTGGCAGT-TGGATTGGAGATGCGAC-----------GTGAGGCATAACAGGGATGAAAGTCAGAAGTCTGCAGGCAAGTGGTGTGTTAATCAAT----------------TTTTTTTACAATTGCATTGTTCAAACTCACAGGGAACTTAAGGTCTGGTAATTATTATATTCTATGTTAATTAAAATTGCTTTTGTTTTATTTTGAGTTACTGCCCAAGTAGAGC----------------ATATAAATAAATGACCAGATTATTAAAAAAACACACATTTTTTGGGTAAACTTTATATACG-AATGTGTCTACACccttccccc--attcct---cccacaaccct----cactctccctaac---aaattcacgacctcatcttcaattattattgttacac------atatgtatacacagctatatttataACCCATT------GAGTCACTCTGGCATGGCTCA------------------AGAGCTAATAATAAAGACAAATA---AGACTGGTTTGCTTCTGCC--------TGCTACTTGCTACAATCCTACAAATAATTCATTCAATTTTT-----------AGAGGAACCCAGCCTTC--TGCTCCTAAGCACTGCATGGAGATGTTGCAAGGACCTATGGACAAAGTACACAGGATGCAAACATTTTTATTAAACAAGTGCAATTAGA--------AACACATCAGCTTTAAGCATGTGTAAGTTTTCCTTCAAGGTAAGATAGGTAAGGATTTTCG-GTTTTCCAAAGTTGAGCACGTAGGAGCAGCTGGAGGAGTGGGCAGGACA------------------------------TTTGCTGTA-----TAGACTGTGT-AAACCAACATTACT-AAGATAAAGTGTGAGAAC-----TCTTCTTCTTCTGAAGTCTCTTACCTTATCAAG------------------------------TTAATAAATTATTAACAGGTTAAACACAGattttattatataat-aaaatataatGCTAGGCAGATTCCCATCATGAC--TGAAGAT-AATACTGCAGGCATGATGAAGACGGTCAAAGCGCCCCTTGGGAGGGTAAAACCgtgtgtgtgagtgtgtaactgtg--tgtgtgagtgtgtaactgtgtgtgtgAGTTTGGATGTGCAGGCAACAGAATTATTGACCTGACAATAAAACCCCTTCTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCTGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGGAACAGAAGGACCTGCAGCCCTGGCACCATGGTCGCAC-TGCTCCAGTGAG----AAGGAGCAGCACAGAAGGGCATTTATGTGTGTGCCTCGCTCGGGAATTTGAATCACGGCCAGAATATTTGCAT-AATTTGATA----GAAATGCTGATATCTCTTGG-GACTTTCCTTTTCT
s HiC_scaffold_1 130994759 1845 + 233722169 ttttaaaaagcataggAAACAATTTAAGAGCTCAGTAG----CCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCTGACAAAAGTAAAAGCAC-CTATGATAACAATTTCATATTGAAACGGATATGAA-AGTGTATATACCAACTAGAAGAAGGAAATCAGTGTctcttttcc-caaatatttttgcAAAGATCAAATGACAAA-TAGGTTGAATTTTGCTACATCTCTT-CATCTATAAAGTCATCTTTATATTCCTGTAAttgactttctgttttttatctgTCCACATCTGTAAATAGTATTATGGGTTGGAGACATGAACAAGGGTGGTGATGAGACATAAAGGTGATTAAGTTTGGGAGCTTGGTAGCAAGTTG---ATTACTtaatccttcccttcccttcccttcccttcccttcccttcccttcccttcc------cttcccttcccttcccttccctcccctcccctcccctcccctcccctcccttcccttcccttcccttccccagcaACTCCCTTacccatttttttgtttaattttgagataggttctttcAAA--------ATTGGctgggctgagctcaaatttgcaatctgtCTGCATCAGTctccctgaatgctggaattacagctgtgtaccaccatTCCTGACCAGAAGTTC----------TTACAATTGATTTGTTTAAACAAGTCTATTTTTATATCTGGTgctaatttcaaaacattttgctAGACTTATTTTGACTTACCTCATATGGAGTGTGTTTATATATGACTTTCACTAAAAAGTAATAAACAAACTA--TGGCTTCAGCTCCCAGTTATGTCACTTACTATAGAC---TGTATGAATCACTTAATCTTTctcatttatagaaaaaaactTAATAATCCTTGTTCTTGACCATCTCATGAGAACAT----AATATATATGAACATCTTACACA-----TAGAGTGTCTTATATAAGTAATGCAAATAAAATTAGGATAATAAATCAGCctcaaa-atatgtaatattttctt-----taaaacaagtcatgatttttgtgtttttcaaagctAAGCAAGTATGAGCAACCAGGGAAATGTGTAAGATAATGAAATTAAGTGtagtttagtggcataagtgtGCTGCAGTTATTTGACTTCCTCAGAGTAACTTTATTGaagatgaaatataaaaacattttcctgtttGCTCTAAAGTTTTTTCTATTAGATAGCTGGTTGCAATAATTAGTACTTTGGTGTTTTTAATAATTCATTAAGGGAATGACTACCAGTATTAATATATAGTGAAAACATAACACTAAGCAGATATTATTCTTGACCATTTAGATAAATACTACATAAATGGTGAATACTTACAAAGCA-ACTTTGGGA--------------------------AATTGTGATTGTATGAGTGTGTC------TATGTGAAAATAgttattgagataaaaatatg------tggataataaaattttctcttaccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTTCACCTCAGGCAAGAGATGCAAAGCTAAGAGCAGAATAACCTTCAAACTGAACATCGTAATTACACAAACTACAATTAACCttacagaa-aggaaaggagaatatTTATACATCTGTTTAACTCAGGAATTTGAATCAAggcaaaaatatttgcataaatatgGTATAGTAAAATATTACAGTTTCTTGGTGAACTTCCTTATCT

a score=4968
s chr3           144817917 148 + 160039680 CCTACTTTGTCGTACGATTCTCGTTTTGGCATTAAGTACTCAGATTTTGACTTCCAGGTCATCGGGACTAATATGCTTATGTTCCTGAAATAAACTCTTCCTTGGCTGGCTTCAAACAGGTAGGTAGAAGCTTGAGTTACCATTTCCT
s HiC_scaffold_1 131351600 145 + 233722169 CTTACCTTTTCATATGATTCTTGTTTTACTTTGCTGTAATTG---TTAGCTTTCCATGTGGCAGGTATCAATATCTGTATATTTCTGAAGAACACTCTTCTCTTGGTAGCATTGAAGAGGTAAAAAGAAGCTTCAGTTATCATTTCCT

a score=5651
s chr3           144819301 159 + 160039680 CCTTCTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCTGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGA----GGAACAGAAGGACCTG--CAGCCC
s HiC_scaffold_1 131218929 165 + 233722169 CCTCCTTACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAGCCCCACAGCAGGTGCAGGACTAAGAGGGAAGCGAAGGCTCTGAACAGCCC

a score=3830
s chr3           144819305 95 + 160039680 CTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCTGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCAC
s HiC_scaffold_1 131352558 95 + 233722169 CTCACCTTAATGTTTGGGATGAGATTCTGATTCTCAGGTACCCATGGATTAATTGCGACGAGTAATCCATCATATCCATTGTCTCGAAGCTGCAC

a score=5080
s chr3           144819305 172 + 160039680 CTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCTGGCACACTGGGGTTAATGGCAATGACCACACCCTCGTATCCATTGCTGTTGAGATGCACCATGGA---GCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGGA-ACAGAAGGACCTGCAGCCCTGGCACCATGGTCGCAC
s HiC_scaffold_1 131313332 175 + 233722169 CTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGACGGAACT-CTTCCATGATCCCATGGCTGCAC

a score=7696
s chr3           144823194 354 + 160039680 AGACCAGGAGGGGTGCTGGGGGTACTCAGACCAGGAGGGGTGCTGGGGGTACTCAGACCAGGAGGGGTGCTGGGTGTCAAATAAACTTGTGGAGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTA-----GAAAAGAGAAA
s HiC_scaffold_1 131287842 347 + 233722169 AGGCCAGGAATGGTGTTATTGATACTAATATTAGGA------CTAGGAACAGAAATGTCAGGAGGA---CTAGGGGTCTCTGGAG---GAGGAGGAATAAACAAAGACACTTGGGCCAAGTTGGATATTTCTGATTCCAGATTAGCCTTATCGACAGCCTTAATAGCAATGAAAAGATTGGTGCCATTTTCAAAGGCAATGTTTTCTGGTTCAAACACAAAGATTTCCTCAGAGTTGGCCTTCTTTGGGATGAGACCAGTTGTGTTCACTTGAACTGAAGCATTGAACTTGTCTCTGAGGTCAAGGACATTTGTACTCATTCGAATGATATACTTGAAAgctaaagaggaaaagagaaa

a score=19380
s chr3           144823241 1185 + 160039680 GGTACTCAGACCAGGAGGGGTGCTGGGTGTCAAATAAACTTGTGGAGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGAAACATCACGTTCGTTAGCGTGGTGAGGATGTGT----------CTCTGACTCTTCTCTGGGGCTG--CAGCCTTCCAC-CCAG--------------AATCCAGG------------------------CTTCTTTTTAGAAAGATACAGAAAG----------------------------AGAAGAACT--------------------CTGCTTTAAATTAG------------AGCAAGGTACACATAATA--------------TTCATGTGGAGTAAAAGCATAAG------TCCATAAGTAT-----CTTCTATTTTCTTTCCTTTTCTCTTTCTGTAAATTAAATTGAAAGAAGAAGCGATGGGGAGCACTCAGAGAAGCAC----AGTTACATACAGGGAGGACGGAAGGGCAAGAGTCAAAGGTCACAG------ACGCTG-GATGAACAGTAAGCACAGGCCCAGGACCTCTTCCCTCCTCAGCTAGCACCTTGATTCTAC----------------------AATGTC----ATCTTTCTCATCTCCAGTTTTTAAAGTGTAAAACAGAGATTTAGTGATTTGATTAATTTCACACGAAGTTTTCCGACTGCTGATATTCTGACAGTGATATTTGTCAATGGTAATGAGTAAAAAGTGTTTAGAACAGCGTAGTAAATTGGTAATTAATGGGTGGCTGAATGTTAGCTGTTGTAACTATTGTTTTCTTTAGAAAAGAAAGGAAGATTCCTGTGCAAGTATTACATTCCACACTGATTTTAGAAATCAACAGAAA---TGGACCCAG-AATGTCTTA--------TGAATTGTGAGGATAAAATATTTATAACTCTTATT-TGGTATGAAAACTTAATTTTTTATGTTTTTAGGTAATGTTGGAAATACTTAAAATATGTGGTACATAACTTTGATTTTTT--TTCTCCCATAATTAAATTCTCTGATTAACATTTAGTT----TCATGTTAAGTCCCTGGATAAGTCCTGACCATTCCACTATCACTCACAAATCCTTGTTTTTCATTTAGGTGAatcta
s HiC_scaffold_1 130977600 1326 + 233722169 GGTACACAGAGCAGGAG---CACTGGATTGCCA---------TGGAGGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATTCTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAACAAACAGTTCAGGTGCATTAAAAGCACTGGGATACCTTATTGCACCACACTGCCTCATGTACAGGGACAACCAGAAATGCACACCAGAGTTTAGTTATGGAAATCCAAGCTATGGTTTTTGTCTAGTTATCCCCTTTTCTCTAAGAACAGACATAAAAACAGCTTTTTATGTTGTTACCTCCTCATAGAAAAATTTAATTCAGTATCAAATAGTACTTGTTTTAGCtagatttctttatttaaaaagagaaatataatgagctgaaacactttttaatttagaacaaagagaaaaaaaatgttccaaaataATAATGACATCTAGTACAATTATCTCTATATTGTTGCTTATTAAATTTAAAGGGAGAAACAGGAGGATAAGTAAGAGAGAGGCAAAGAAGTAagcataaaaagtaataaaaggcAGAGACTAATGTGTACTAATTATTACACTGTAATGTGTACTAA--ATATGCTCAGAAGCTAGGTAGACCTTGATTAACATGCTAATTATACTGCTTTTTAGCCAtgcaacaaaaatttttttaacttctcttatttccatcttttaatctataaaatag----TCAATCATTCAATTTCTTTACCAAGGATTTATTAAATGCCTAGTATTCTAGTGGGGAGCACGATACAGgataatgtattaaaattattttacac--------aaattaataaataat----------atgttAATTATTATAAC--TTAAtttattaagaaaggaaaaaaagatccaCATG------TTTCATTCTATATCACTTTTTGAAGTTGACCAGAGTCCTTGATATAGAAATGTCTTCTTACATTTTGAAATGTGAGAATAAAATATCTAATATTCTTTTTCTGATATGAagactttgttttttatgttttcaggAAATTTTCAAGGTATTTCATGTGTGTGGTGAATAGCTTTGATTTATcagattttaaatattcagtgattctgcttaatatttcatttatctaGTATATATTTCATCAACCCATCTTAATCATTCT----TCACTCAAA---CCCTGTGCCCTATGTAGGTAGAGCCA

a score=6552
s chr3           144823266 280 + 160039680 GGTGTCAAATAAACTTGTGGAGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGA
s HiC_scaffold_1 131073007 277 + 233722169 GGTGTTGGATCAACTTCTGGGG---TCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGCTCAATCATGCTTCCACTTATCCTTATGATATACTGTTGAACTAAGAAAAAAA

a score=6949
s chr3           144823266 319 + 160039680 GGTGTCAAATAAACTTGTGGAGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGAAACATCACGTTCGTTAGCGTGGTGAGGATGTGTCTCTGA
s HiC_scaffold_1 131148227 316 + 233722169 GGTGTTGGATCAACTTCTGGGG---TCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGATCAATCATGCTTCCACTTATCCTTATGATATACTGTtgaactaagaaaaaaaagttacatgTAGTTTAGTAATTGTAGcacatgtttttga

a score=6481
s chr3           144823286 278 + 160039680 AGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGAAACATCACGTTCGTTAGC
s HiC_scaffold_1 131107855 278 + 233722169 AGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATGTATCGTTCAACTAAGAAAAAATTACATCCAGTTCAGTAAC

a score=7398
s chr3           144823286 278 + 160039680 AGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGAAACATCACGTTCGTTAGC
s HiC_scaffold_1 131234487 278 + 233722169 AGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGACTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTAGCTTCCTTTGGCACCAGGTCAGTGGTGTTAACTTGAAGAGCAGCATCAAAATTGTCTCTCAGCTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAAATTACATCTAGTTCAGTAAC

a score=7409
s chr3           144823286 278 + 160039680 AGGAATAAACTTCACAGCCTGTGCAATGTTGGAGACCTCAGAGGAGAGACGGGCTTCATTGTCAGCCTGGATTGCAATGTAGACTTGGGTGCCATTTTCTATTTTAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGAAACATCACGTTCGTTAGC
s HiC_scaffold_1 131184529 278 + 233722169 AGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAAATTACATCTAGTTCAGTAAC

a score=5132
s chr3           144823383 168 + 160039680 TCTATTT-TAAAAGTTTCTGGTTTGAATTTAAATGTTTCTTTTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGGAGAGCCAGAGAATGCCCACTCATCCTGATGACGTATCTATATGCTAGAAAAGAGAAACAT
s HiC_scaffold_1 131323907 168 + 233722169 TCCATTTGCAAAAAATCTGGGTGAGAATTTAAATATCTCTTTGGAGCCAGCCTGCTTAGGATGTAGCTTTGATGTATTCACCAAAATGGCATTGTTAAAATCATCTTGAATATTCTGTAGGCTTATACTTATCCTTATTTCATAACT-TGtagctgaaattaaaaacat

a score=3910
s chr3           144823423 68 + 160039680 TTGAGCCAGCCTCTTTAGGCATTACACTGGAAGTATTCACTAAAGTAGAGTTGCTAAAATCTTCTTGG
s HiC_scaffold_1 130976881 68 + 233722169 TTGAGCCAGCCTCCTTAGGTATCAAACTACATGTTTTCACAAAAGTAGCATTGTAAAAGTCTTCTTAG

a score=41094
s chr3           144824739 1611 + 160039680 TGTCTGCAGTTATCTGTTTACCTGGTGTATTTTGTACTTTGTTGACTTTAAAGCGCTAACCTTGTG-ACAGAGACTCTGAAAGTGTTTGCAGGCTCAACAG-------TAATTGAATAAAATTGAGCAAAGACATAAATACTT--AGAAAATTGCCCTTTGTTGGGACAAAAGGATACAAGAGAATAGTGCTATTTCATCTGTCCATTTAATTT---AAATAGCTCAAATTGAGACAGGCAATTTGATAAAC---AATCTGA---AAAAAACTGGGTTGGAATTTTAAGTTATTAGA-ACAGGAATAATTTGGGCCAGCTTGT-ATCTTTTGAAGTTTCAGTTTTTATAT-TTAAATATAAGTGAATAGTGGGTTACTGTTATTTATTCTATATGTGTTAGTCAGACATTAAATAAGACATTAAAGAAGCTTTAGAAAAATGAAAGGTAAAGGGGTGTCTTTCATAACACTTTAAAT-TCGCCATCAGACTCACCTCTTCCCTTATCGAGGACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATGATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGAAACACACGAGCGTGATCGCCATCAGGGGGCGCTCCAGACACAGTAAACGATCCTCCAGAGGTTAGTCTGCTGAAGTCTTCCACTGTAGCTT---CTGTGGCTTCTGGGATTTCCGGTCTGGGTGGATTCAGTACAATTTGATCTACATCCCCACAACAAGCAAACAAAAACAAATACATTATAACTTTTA-TGTTGTCATGTCTGTTC------TTGTAAATTAATCTTGCCG-------------GTACTCAGTGCAGATATTGAA------AAGCTTGT------TTGTTTTAACATCATTTTGAAGTGGATGAGGGAACGTGACATTTTAGttaagctgtattttaatcttatccttatctcatactcgcctgtgaaattttttttgcgggcaagaattgtgttttatccgtatttgtagtgctagcatctagcacagagcttgcttcatagacaatgct----------------------gagtggagtgaatTGAGGGGAGTTC---CAAAACATG----CATAAAC-GTGTCTATGAATCCATT-GCCCAGATTTGCTTTTGGGACATACCGACG-------GTGACCTCTG-------TTATGCTTTTGATCTTTCTTATATTTATTTGACCTAAACCAGACATT-TCTATTTGAATGTTACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTCTTTTGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGAGTTAGTCGTGGTAAGTAAAAATGAGAGTTGTAACTGTGAGTACAGGGCGTGGCCATGGTTTCGTAGTTCAGGTGGCACAG-TTTCAAGTACAGGAGTTCTAGGGT--CACTATATTGCTTCAAAGTTTGTCTTGGCCACATGATAACCCTCCGATTCTGGAAGAATTCTTAGTAGGTGTTCAGTCCTTTTTTTGTGGTGCTCATTTAAATAATGATTGGGG------CTCCTATTTCATATAAAAAGCTTATCAAAATA-AGAAAATATAA
s HiC_scaffold_1 130980828 1573 + 233722169 TGTCTACAGCAGCCTGTCT--CTTACATTTTATGAATGTATCTAATTTTTGGGAGTAAAGATTGTTTGTAGAGACCC-AATAGTTTTTGAAAATTCAACAGGatgcaataaatgaataaaattttgcaACTAcagaaatactttgaaaaaattttctttgctAGGGAGAAAAGCACATAACAAAA-----CTATTg----tgtattcttaatttttaaaatgactcaaaCTGTGAGAAGCATTCTGGCACAATAGAATCTAATACACAAGGCCAGGTTACAGTTCT--GTTACTAAACATAGAAATAGCTTGAATCAGTTCATTATCTCTTGGCGTTTCAGTTTTCACGTGTTAAATACA---TAATGGTGCATAACT-----------TATAAATGTTATTCA-----TAAATGAGACAACAGAAAATTCCTAGCAAA-TGAAAACCGATGGGATTTCTTGTATCGTATTTTAAATCTTAATATCAAACTTACCTTTTCCTTTATCAAGGACATTGCCAGAGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAATTTAGCCTGAAGGTCTGTAATTTTACTGGGTGGGAACACAGGAGTATGGTTACCCTTAGGAGGCGCTCCTGACACAATGAATGACTCTCCCAAGCTTAGTCTGCTGAAGTCCTCCAGTtcaactttttctgcatcttctttgatttcaggtCTGGGCGGGTTCATTATAATTTTGCCTAC----------CAAACAAACAAGCGGTAATA--TTGTAACCTTTCCTATTCCTATGTTTATTCCTTATCTTGTTAGGTGATTTTGCTGCTGTAAATGATTGGTGCTGATGGCAAACATTAAAGAAGGGAAGCTTTTAGTGaagcattttaatgt---ttttaaattgaggAGACCATATGCCACGTTA---AAACTCTGTTTTAA-CTTGTCTTTCTACAGGACTTGACTGAAAA---TTCTTTGAGTTCT----Ttgcatcttagttac-tttgtagCTCCTGCAGCTGGCACAGTGTTGGCCACATCAGAGATGatcagtaaatttttattttattgtgaatgaAATGAACCAGGTGGGATGTGAACAAAACATGTAATCATAGACTGTG---GTAGGTCCATTAGTAGTAATGTGGGTTTGGAAAATATAGATGAATACTTGTGTTCTCTGAAGTAcattatattttcaatgtttGCCATATGCAATTTACCTATATAGGTTATTATTTGTTTCAGTGCTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGTTGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACATTGAGATATAATAATCAGTC-------------ATCAGGAATGGCGATGTCAGCA---------------GTTTGGAAGACAATATAGTACAGAGTTTAAGTACATGAACCTTGGGATGACACTATTTTGGTTTGAAGCCT-----------------------------------AATTCATGATAGG-------------------------CATTTAATTAATAATAgctgatattattattatttcataaaagaaGCTTATCGAAATATGGAAAATATAA

a score=5676
s chr3           144825172 281 + 160039680 TGTCTTTCATAACACTTTAAATTCGCCATCAGAC---------TCACCTCTTCCCTTATCGAGGACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATGATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGAAACACACGAGCGTGATCGCCATCAGGGGGCGC---------TCCAGACACAGTAAACGATCCTCCAGAGGTTAGTCTGCTGAAGTCTTCCACTGTAGCTTCTG--TGGCTTCTGGGATTTCCGGTCTGGGTGGATTCAGTACAATTTGATCTACAT
s HiC_scaffold_1 131073732 284 + 233722169 TGCCTTTCACTACA---TGAGTAAACCACCTGACATTTCATTCTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTTGAGGTCAGTGATTTGACTTGGTGGGAATG------------CTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCAC--AACCTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCAT

a score=5764
s chr3           144825205 884 + 160039680 CTCACCTCTTCCCTTATCGAGGACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATGATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGAAACACACGAGCGTGATCGCCATCAGGGGGCGCTCCAGACACAGTAAACGATCCTCCAGAGGTTAGTCTGCTGAAGTCTTCCACTGTAGCTTCTGTGGCTTCTGGGATTTCCGGTCTGGGTGGATTCAGTACAATTTGATCTACATC-------------CCCACAACAAGCA-----------------------AACA----AAAACAAATACATTAT--------AACTTTTATGTTGTCATGTCTGTT----CTTGTAAATTAATCTTGCCGGTACTCAGTGCAGATATTGAAAAGCTTGT----------TTGTTTTAACATCATTTTGAAGTGGATGAGGGAACGTGACATTTTAGttaa------gctgtattttaatcttatccttatctcatactcgcctgtgaaattttttttg-cgggcaagaattgtgttttatccgtatttgtagtgctagcat-ctagcacagagcttgcttcatagacaatgctgagt--ggagtgaatTGAGGGG-------AGTTCCAAAACATGCA----TAAACGTGTCTATGAATCCATTGCCCAGATTTGCTTTTGGGACATACCGACGGTGACCTCTGTTATGCTTTTGATCTTTCTTATATTTATTTGACCTAAACCAGACATTTCTATTTGAATGT--TACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTC----TTTTGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGA
s HiC_scaffold_1 131108606 903 + 233722169 CTTACCTTTTCCAACATCAAAATCCTTTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAAGTCTGTGATTTGACTGGGTGGGTATAGGTCAGCGA---CTGCATTATTTTGATATCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTCAGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATTTCCCCTACATCAAATAGTTTCTGGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTCACAACATGGTGAAACACTTCCCTTATCtcgtttgacttttttttttgccataccCACAGAAACATTTGGCTAAGTCTTGT---GACACAATATTACTCTTGGGAAACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGAGTAAAAAT--AGATAACAAATTGCTGTGT-----------CCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCGTCCAGGTATTCCAAAGTAACAGAACACAAATGGCCTGAGTACTCACTAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAGGAAGTTGTGAA-------ATGAA------GCCC------------------------------CCTTTGTCATACC----AAATTACAAATATTACTCCAGCC---AGCACAGGTTTCAGGTAGCATGTGGCACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTC-TCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCTAgttgtagaaataaaaaa

a score=6608
s chr3           144825205 910 + 160039680 CTCACCTCTTCCCTTATCGAGGACCTTGCCAGGGGCCGTCCATGTAAGGTGAATATGATCACCTATAAACTCAGCCTCCAGGTCTGTGACTTTACTTGGTGGAAACACACGAGCGTGATCGCCATCAGGGGGCGCTCCAGACACAGTAAACGATCCTCCAGAGGTTAGTCTGCTGAAGTCTTCCACTGTAGCTTCTGTGGCTTCTGGGATTTCCGGTCTGGGTGGATTCAGTACAATTTGATCTACATC-------------CCCACAACAAGCAAA---------------------CAA-------AAACAAATACATTAT-------AACTTTTATGTTGTCATGTCTGT-----------------TCTTGTAAATTAATCTTGCCGGTACTCAGTGCAGATATTGAAAAGCTTGTTTGTTTTAACATCATTTTGAAGTGGATGAGGGAACGTGACATTTTAGttaa------gctgtattttaatct------------tatcctt----atctcatactcgcctgtgaaattttttttgcgggcaagaattgtgttttatccgtatttgtagtgctagcatctagcacagagcttgcttcatagacaatgctgagtggagtgaatTGAGGGGAGTTCCAAAACATGCATAAACGTGTCTATGAATCCATTGCCCAGATTTGCTTTTGGGACATACCGACGGTGACCTCTGTTATGCTTTTGATCTTTCTTATATTTATTTGACCTAAACCAGACATTTCTATTTG--AATGTTACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTCTTT---TGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGAGTTAGTCGTGGTAAGTAAAAATGAGA
s HiC_scaffold_1 131185279 940 + 233722169 CTTACCTTTTCCAACATCAAAATCCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATGGGTCAG--TGACTGGAGTATTTGGATAC-CCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTATCTCAGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATCAAATAGTTTCCAGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTTTACAACTCGGTGAAACACTTCCCTTATCtcgtttgactttttttttgccatatacACAGAAACATTTGGCTAAGTCTTGTGAAATAATATTAA----ACTTAGG--AGACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGGGTAAAAAT--AGATAACAAATTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCATACAGGTGTTCCAAAGTA-----ACAGAACACAA--GTGGCCAATCTG-------AGTACTCACA--------AGGGCCTGACTTCTTTCCAAAGCTGAAT--------TTGGAGGCAATT-----ACCTGAGTATCCCAGTTCAAAAACAGGACATCTGTATTGAGTTGTGAAA------GGAAGCCCCCTCTGTCATACC----AAATTGCAAATGTTACTCCAGCC---AGCACAGGTTTCAAGTAGCAAGCGGCACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaacaaattatt---actgaaaataaga

a score=5701
s chr3           144825893 202 + 160039680 TTACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTC--------TTTTGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGAGTTAGT
s HiC_scaffold_1 131292091 205 + 233722169 TTACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTTCC-----CTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCTGGccagggaaatgaaggaaataat

a score=6801
s chr3           144825893 220 + 160039680 TTACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTCTTT---TGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGAGTTAGTCGTGGT----AAGTAAAAATGA
s HiC_scaffold_1 131025123 227 + 233722169 TTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaaggaagaaattattatcaaaaagaaaagatga

a score=7884
s chr3           144825894 224 + 160039680 TACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTCTTTTGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGAGTTAGTCGTGGTAAGTAAAAATGAGAGTT
s HiC_scaffold_1 131150087 221 + 233722169 TACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCCGTGGT---AAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAATTATTATGAATTCAAGAAAGAATT

a score=7695
s chr3           144825894 188 + 160039680 TACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTCTTTTGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAA
s HiC_scaffold_1 131074868 185 + 233722169 TACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCCGTGGT---AAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAA

a score=5997
s chr3           144825895 220 + 160039680 ACTTACCATTTTCAACGTAGCCAGGTATATAGAGAGACTTATTCTTT---TGTTTCAGATTTAGTTTAGCCATGTTCTTTCTTGCCTGGGCATTGACTTTTAAGCTGTATCTGCCATTTCCATGGAAGTCTGTGAAATATCTTGAGTAGATGCCGTCATTTTTGAGTGTGTCAGCACCTTGGCATTGAAATGTAAGAGTTAGTCGTGGTAAGTAAAAATGAGA
s HiC_scaffold_1 131236338 220 + 233722169 ACTCACCGTCCACTACCCAGCCTGGTATATATGCGGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaacaaattatt---actgaaaataaga

a score=34287
s chr3           144827179 985 + 160039680 AGAGGTTTAACACATTGCAGCTAGATTTCATTCACTTTGAAATACAGTTCTTAAGTGTACAGAGGGA-----CACT-----GAGATAGAACCCAATGAAATAATTTTAAGTCCCATGGCA-------------CCCATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAAA--AATAAATTCCCTTTAAGAGCTTTGCTAGTGTTTTCCTCCTC-TGTACTTAGGGTATATAATTACTTAGAAGTGTAAAAAGAAAAAGAGCAAGGGCttttgtgatgttgggaatggagccagggcctctgcaagcttagctgctgtactgttgagatattgccccagtcTGAATACTATCTGATTTAGTAGACTAACAATGTGGGTATGAATCCTTCTGTGTTCTATGAAGCTTACTTTTAAGA---ATTACCTGTTACTGCTTTAGTGTTGGAAACAC-AGAGGATGCCTTTACTTTCTAACATAAATGGGTAACTCACAAAAA---------CAACAGAACAGACCTACCTCAGCAATGCCTGGGATCCGAAGGCGAACAGAGAAGATATTTAGCTTATCTTCCTGGAAATCGGAGGTGGTGTAGTTTTTTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTCTTACTGTCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCCGACATTGAAGGCTTTGCTCTCCAACTGTAACA---GAAATTTTATACAAGATGCA
s HiC_scaffold_1 130982789 935 + 233722169 aaaattttaaaaaattatagctaaatgtaattttcattaaaatatgattAATCAGCATTTACAGGAAATATTCACTTCTAAATCACGGAATCCTGTGGGAGGATTTAAAATTCAATAGAAGTGGATGCAGATTCTCATTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGGTAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaaattaaaaaaaagactgtaaaagcttttgtaatattttcctactcttaaatttagaatataaaattatttagaaatttaaaatga---------------tttttcatatttga--------------ttttacaa-------------ACTGGT-AAATAGtg---caattttattactttt------------------------------atttctctg----------------cttttatGACAGATGATGTGTTGCTATTTCAACATTGACTGTATGagatgttgtttttatttttttatcatagGAATTGACTAATAAAacgatgaaaataaaaaaaatggatcTACCTCTGCAATGCCTGGTATTCGAAGTCGGGCAGAATGAATATTTAgcttatcttctttgaagtctgaggtttcatatatttttccttttggatcCTGAAGAATAATTTCTGGCTTCCTTCTTGTCCAGGTGACAACAAAGAAAGTGTCATTTCCGATTGTACTATCCACAACCACTGTACCATTTACCCATTTATTCCTTGTAATGTTAAAAGCTTTGCTTTCCAACtattacaaatgaaaacacacataAAATGCA

a score=5811
s chr3           144827289 310 + 160039680 CCCATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAAAAATAAATTCCCTTTAAGAGCTTTG
s HiC_scaffold_1 131332529 305 + 233722169 CTTGTTACCTGCTCCGTCATCAAAGAGTTTCAGCATAACAGGATCTCCAGACCCTGGCTCAATTATAGCAGTGACAGTGGCATTAAGAATGGGATAAAACCCTCTTCTCACATTTGCATAAATTGTCACAGGATCAGGAAAATGGACGCTGTCTTTTTCCACAAagacttccacagtggctgggggCACAGCAGAGCTAGAGGCGCGGGAGGCTACTGTCACCGTCAGGGCTCGAGGAGAATGGTGGGTATTGTTCAGGGAGTAGGCCC-AGTGCCCAGGCTGAAAGATAAACACTTTTT----GCTTtg

a score=7264
s chr3           144827292 282 + 160039680 ATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAA
s HiC_scaffold_1 131152085 279 + 233722169 ATTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCGCATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTCGCACTCACTGTGATTGGAGGCACAGCAGCTTTTGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGAGATTG---CTTTGGCTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAA

a score=8257
s chr3           144827292 282 + 160039680 ATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAA
s HiC_scaffold_1 131187890 279 + 233722169 ATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTT---CTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAA

a score=7561
s chr3           144827292 282 + 160039680 ATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAA
s HiC_scaffold_1 131076887 279 + 233722169 ATTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCACATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTAGCACTCACTGTGATTGGAGGCACAGCAGCATTCGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGGGATTG---CTTTGGCTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAA

a score=8436
s chr3           144827292 282 + 160039680 ATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAA
s HiC_scaffold_1 131238343 279 + 233722169 ATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTCGGGAAGGTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTT---CTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAA

a score=7555
s chr3           144827292 271 + 160039680 ATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACTGAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTG
s HiC_scaffold_1 131111196 268 + 233722169 ATGACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGCTTG---CTTTGGCTTGAAGGTTATAAATCCATGTG

a score=9287
s chr3           144827292 282 + 160039680 ATTACCTGCCCCGTTGTCCCAGAGCTCCAGGGTGACTTGATTTCCACTCTCAGCTTCTATGACGGCTGTGACATTGGCTCCCAGAACAGGCAAAAACCCTTGGCTGACCCTTGCATACACAATCATCCGGCTAGGGTACTGGGCTGTGCTCTGACTCATGTGAGCGGTGGCGATGACTGGGAGTGTGGTGGGACTTCTTGCTCGAGTGGTCACTGTCACTGTTAGCAACT-GAGATGTGGCACCCTTATTTAAGAGGCTGTAAGTCCAAGTGCCTGTCTGAAA
s HiC_scaffold_1 131026421 279 + 233722169 ATTACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTG----CTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCTAAAA

a score=4368
s chr3           144827991 169 + 160039680 TTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTCTTACTGTCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCCGACATTGAAGGCTTTGCTCTCCAACTGTAACAGAAATTTTATACAAGA
s HiC_scaffold_1 131239199 169 + 233722169 TTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatatatttaaaaaaga

a score=4233
s chr3           144827991 149 + 160039680 TTCCTTTTGGATCTTGAAGAATGATTTCTGGCTTTCTTACTGTCCAGGTGATAACAAAGAACGTGTCGTTGCCGACGGTACTGTCCACAGGTACTGTACTGTTTATCCATGCCCCTGCTCCGACATTGAAGGCTTTGCTCTCCAACTGT
s HiC_scaffold_1 131188750 149 + 233722169 TTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGT

a score=44234
s chr3           144836493 1725 + 160039680 AAAAGGAATAGCTAATAATTAGCACAATGGGCGTCTATGA-AACAGTGAGAAGACAAAGGGAT---------TTGCTGACCTGCAGAGCCTGCTGTGAGATGCTGCCACTTTTAGATGAGATCCCACTGAAAGCATCAATCAGGCCATTCACGTCTTCCTTGGCATAAAATCGAAGCCCTCCTAAAGGGGAGTTTTAAATGGGAAAA---TCCTGTTTACTCTGTGAGCTCAACAAACTACTGCACAAGCTACTTAGGTCTTC--------------AGTTACAGTCCACCAAGGATTGCTTTACCAG-----------ATCCTCAGGGTCGTAG----TGTTCCAAGTA--------GAATTTACTTACCCAAAGTGTGT---------------------TAAGAACAAAGGGAAACCCAAAGA-------ACTTCAGTTATTTGTTTGATTAATCAGCCACCAGAAAG-GAGTGCAAGTTATTGTAGCAATGCCTGGATATGACACAATTAATACCACAACAGTGAAATTCAAGGCAGCTCTGAAAAGTTAGTGAATTATTTTCTGGTTGGATCACAACTGCATCAATGATCATGAGATACTGACTGTTTAGAGTGAAGGGAAATTGATGTACGGTAGAAAATAGATAATGGAGACATTAAAGGACAGAAGGATCTTACTTGCATGTAAGAAGCCAAGAAAGAAT----------------------AGGTTGGAGAGAAACGAGTGCCTAAAATATGATATTCATTACACACTTATGTAACTACTAGATGGCTGAAAGTCCGTCTAGAAGACTACTGAAGGAGCC---ACACAGGGGCTGGTGTGGTCAGGCTTAGAATGTGTTAGGACGAGATAGAAATACCCCACGGTGGAATGA---------GTCCTGAATGATAGTCAGGACTCT-----------TCTGCAAATCATGTATAGCCTCTGGGTTTCCATTTGTTCCTCCATAAATCTG-GATGCCTAAACCTTTTCTGTCGAATCGAATGGTAGTTTTAAGCTGAGAAATAATTTCGGATGCCGCTGGGAGCCGTAG---AACAAGGCTCAGATTAGTGGTATCGGTTGAAATTAGGCAAAGAATAAATGGTGACA-AAGATAACGAGCACCATGAGCCGTTGGTATACG--GAAGCTGCAGGGGAAGGAAAAAGAACCCAAGGAGCAAGAGGCAAAGATTAACTTTTAGACAGGGAATTTTTGAGCAGTTTTCT-GTTTGTGGAGAAAGATCATGTACGACAGAA-AGACAACCAGAACATTTTCTATTCAA--TCTCTGTTCCAA-GTTGTACCTGTCATGTCTGACAGAGTCTCCAGTTCTCGCGCAGCAGAAGGCCCCAGCGCGATGGTGTGGATGATGGCTCCACTGTGTTTGACCTCCTGAAAGCACGAGCTTATTCTATTATCTTCCCCATCTGTTAGCAATACGATCTCAGAACCGGAAGTGCTCTGGTCACTGGAGGTAATTGCCTGGAGGGGAAAAGCCACATTATTAATCGCAAAAGAATAATTTCTGAATAAAAGAAAAGTAAGAACAAAC----TTCTTTAGTCCTGGAGGAGTCCTTAGGCTTCTGCCTCAGAGTGACctaa----------ctgcgttatcattcccagctgagttggcacgtggaaccgggtataatggatgggttttgaaagctggagtcttgatagacctagtcatctaacgcatgcgtgctccCACTACTCGCAAGAGGAAGCATGAGTCACATAAGTCCTG-TACAAAGTTAGT---------AAATGGCTTTCTCTTATCATCCTAGGAACTACTTGGGG-ATAGGCAAGTGACCCAGGCAG-TCTGGAAGGCTGCA
s HiC_scaffold_1 130983940 1833 + 233722169 AGACAGAAGGGTTAATAATTTGGATAATAGAAATTTATTACAACTGTGAGAAAGcaagaaaacattttaacattACTCACTTGAAGAGATTGCTGAGCAATGTCTCCACTTCTAGATGAAATTCTGCTGAAAGCATCAATAAGCCCATTTATGTCTTTATAGACGTAAAAGTGATGTCCTCCTAAAATGgaatttcaaatggaaaaaaaatcacattt-----ttgaagtaattaa--tactttaaaatccactgaaaatttcttgttaaatttaaaagatgaatttcATGAACTTTTGATATATCAGCATCTCAACTAATCCCCAATAACTAAAACTTTGCTCAAAATAAGGATGAGGAATGAACATaatgaataagaataagaatgaaggaaaataagaataagaatgaagaaatgtttaaagatagatcaagttttattgtttttat-atcaaTCATCAAATGGTAAGTGTGTGCCAATTAGTAAAGTTAAGCCC----------TAAATAATGTTGTACCAATGAAATTTAAGCTAATTCTTATGaatcaattatttattttctagctGAGTTAAAAACATGCCAA-GACAATTAGAGAGCAGCaattcagaataaagcaaaacttgATTA---TACAAAATACATAACATAGGAATTAAGGAATAGA--GAGTTTATTTGGTTGTAAGGAGTTAGGAAAGAATTGGGGCAAGATAGTGTAGGGCAAGAATTAACACAAGTGGCTGCCACAAATAAGAAAAGCTGTACGTATTTATTGAACTAAtaaatggcagagaggccacttGGAAGACTCCTAAAGTAGCCCAGGCA-AGGAGGTTGTGAAGACAG-CTTAGGAGGCGTGGGAG---GACAGAAG-----CAGAGTGGGATGATGTGAGGAGGTCTGAATTGGTATTCAAGGTTCTAGCTATGGCACTGGGCAACACATTTGTAGTCTCCAGGTTTCCATTTCCTCTTCTATAAAACAGAGGTGTCTAAATCTTCACTGTAGGATTGAATGGTGTTTTGGAATTAAGCAATAATTTTGAACTTGGTGAGTAACCATAGGGAAAGAATGTTCTGTTTAGTGGTATTGACAAAAAGTAGATGAGCAGTGAATGAAGATAGAAAATACTGAATAACTTGAGAAGTTGGTACATGaagaagtagagagagaaaagaaactaattggaaagacaaaagacaaa---taa-ttttaGGTGGGAAATATTTGTGCATATTTATAGTTTATGGAGAAACAGCTCTTGGAATGGGAGAgactagaaatttattttcaattgaaACTTTCTATTCCAAAGGTTTACCTGTCATATTTGACAGGATCTCTAGTTCTTTGGCAGCAGAAGGTCCCAGAGCAATGGTGTGGATGATTGCACCACTTCGTTTGACCTCCTCGAAGCATGAGCTTATCCCATTATCTTGCCCATCTGTTAGCAATATGATTTCAGAACCAGATGTACTCTGGTTACTCTTGGTAATTGCCTAATAGTAAAAAATCATGTTATTAATTACAGAA-ACTCACTTCTGAATAAATGTAAACTAAGAATAAACTACTTTTTTTAGTTTTGGAGAAGTCCTTAGTCTTATGTATCATAGTAAGCAAAAGGAAATTTTTTGCATTATCATTTCAGACTGAGTTGGCATATGGGAATGAGTATAATATATAGGTTTGTAAAGCTACAGTTGTAA--------------TACCATATATGTGTTGCTACCCCAGAGAAGGAGAATAAACATTTAGAAAAGCTCTGACACATGATAAGTCTTCAATGAATATTAATTGCTGTTATGATCATAGAGA-TATTTGGGGTAGAAGCAAGTGATCTACACAATTCTGAAAGACTACA

a score=7606
s chr3           144837689 150 + 160039680 ACCTGTCATGTCTGACAGAGTCTCCAGTTCTCGCGCAGCAGAAGGCCCCAGCGCGATGGTGTGGATGATGGCTCCACTGTGTTTGACCTCCTGAAAGCACGAGCTTATTCTATTATCTTCCCCATCTGTTAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131297779 150 + 233722169 ACCTGTCATTTGAGAcagctgctccagctctgcagctgcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCC

a score=5557
s chr3           144837724 115 + 160039680 CAGCAGAAGGCCCCAGCGCGATGGTGTGGATGATGGCTCCACTGTGTTTGACCTCCTGAAAGCACGAGCTTATTCTATTATCTTCCCCATCTGTTAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131032272 115 + 233722169 CAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCC

a score=4091
s chr3           144837726 113 + 160039680 GCAGAAGGCCCCAGCGCGATGGTGTGGATGATGGCTCCACTGTGTTTGACCTCCTGAAAGCACGAGCTTATTCTATTATCTTCCCCATCTGTTAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131192733 113 + 233722169 GCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCC

a score=4211
s chr3           144837726 113 + 160039680 GCAGAAGGCCCCAGCGCGATGGTGTGGATGATGGCTCCACTGTGTTTGACCTCCTGAAAGCACGAGCTTATTCTATTATCTTCCCCATCTGTTAGCAATACGATCTCAGAACC
s HiC_scaffold_1 131243033 113 + 233722169 GCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCC

a score=20467
s chr3           144838383 865 + 160039680 AGGGTGGCAGTGACTACTTGG--AGGCAAG-ATTCGTTTAAAAGGTGACTTTCTATTTT-GTGTCTTAGTATTTGATGATAAATAGACTCAAGTGGAGGTTAGCTTAGGTTGGAAAACGTGAATATCAAGAGTTATCTACACACAGTGGGCTACATCCCTCAACAAGTGCTCCTAACATTTT-AGTTTACAATTTTAACACCGTTTAACTTCCATCTGTGCTCTTTATGCTTGGC-------CTTTTGCTGCCTGAGGAGC-ACTTTGGTCTCTGTGGTTTAAAACGCCAATTT-----GATGGGCCAGGAATTTCGGTGCCTGCAGTAT-CAAATGGTACCAATGACCCACTTTCAAGGTTTTCTCAATGGCATTGCATTCTACTCAG---------------GGTGGTGCCAAAGAGCTTG----CTATTCAAT-----------------TGCTGA---------TCTCTCCTTGCATATCCACTCCCCAGTGCCACTTAGC-CCGCGATGTTGCGCCAG-GTGACATTTGGACATAG----GCT----------ACAGAGGATGGGGAAGGCTACT----TTCTCTACACAGATGATTTGTCTAGATCAGGTTAGACTATGATGAAATGAAGAATCCATGAACTCACGACCCTTGGTGAGA----GTTGAAGAAGTCATCAAGGGTACTATGTAGTAGTCAATGATAGTAAA----TAGATTCTTTTTTAACCTCGAATCCTTTTTTGAGTCCGTTGCAAATTGAAGTTCCGCCATTTGGGTATTGAGGCAGCTTTGTGCTGATCGCTAGGTAGGAGCTGTCATTGATGATCCTTATTAGGTTAGTTTGGATTGTGGCAGTGCTATCAAATGTCACCAGGCCGACCAAGGATTCCTTTTCAATAATTTGAATTAAGTATAGCTCTGCTGCTTGGTTCATTAGGGTCAGACGAG
s HiC_scaffold_1 130986796 926 + 233722169 AAAGTAGCAGTGATTTTTAAACAAGACAAGGAGACCATCaaaggaaagttttctgtttttgtgactTAAAACCTGGC----AGTAGGCTTAAGTGGCGAC-AACTCAGGTTAGAAAAGGT-----TTAAATGATA-CTGGAGGTAGTTGGCTGTAGTGCTCAACAGCTGCTCATAATTTTTTgagttcacaagtttgatttcaTTAAGCTTCATCCTATGGTATGT-TCTTTGGCTGTGATTCCTTCACTGTTTGAGGAGCTACCTCCATCTCT-CATTATAAAACATCAATTTAAATTGATAAACTGGGATTT-----ATCCATAACATTCAAATGTTACTAA--ATTCCTTTGGACAGTCTGCTTATTGAGATTATTTTGTACCCATAGAAATTCAGATTATGGGAGAGCAAGAGAAATGGGCTCCTGTTCAATAAGATTGTGACTATATATGCCCACTATATATTTTCCCCCTTATTTGTCCATTTCCCAGT------TAGTACCTCAAGAGAATGCCAGTGAAACAATCAGATGCAGAGAAGCTCTTTCTGTAAACAACAGATAAG--AggtcactgtttttctttccaaaaatgaCTTACCTGGATCAGGTCAGAATATTACTAATTGAGGAACCCATGAACTCATGGTCCTTGTTCAAATACTAAtggcaaaattaaaagaaatagtatATAATA---AGTGATATTatgattttaagtttttattttacctgGAATCCTTCTTTGAGTCCGCTGCAAATTGAAGTTCCACCACTAGCAACTTGAGGAAGTTTTGAGGTGATGTTTAGATAGGCCCTATCATCAGTTATTTTTATTAGGTTAGTTTGGATGGTAGCATAATCTTCAAATGTGACCATCCCGACCATGGATCCTTTTTCAATAATTTGAATTAAATACATTTCTGCTGCTTGATTCATTCGAATGAGACGAG

a score=6908
s chr3           144839020 265 + 160039680 TTTTAACCTCGAATCCTTTTTTGAGTCCGTTGCAAATTGAAGTTCCGCCATTTGGGTATTGAGGCAGCTTTGTGCTGATCGCTAGGTAGGAGCTGTCATTGATGATCCTTA------TTAGGTTAGTTTGGATTGTGGCAGTGCTATCAAATGTCACCAGGCCGACCAAGGATTCCTTTTCAATAATTTGAATTAAGTATAGCTCTGCTGCTTGGTTCATTAGGGTCAGACGAGTGATGGGGCTTCCCTGTTTAAACAAAAACATAAAGAA
s HiC_scaffold_1 131194400 255 + 233722169 TTTTCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAA------GCTCTTCACCAGGGTGTCTCTTTCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATT---------CGAATGAGGCGGC-TACCAGCCTGAATGAAAAGCGAAAGAA

a score=5630
s chr3           144839020 226 + 160039680 TTTTAACCTCGAATCCTTTTTTGAGTCCGTTGCAAATTGAAGTTCCGCCATTTGGGTATTGAGGCAGCTTTGTGCTGATCGCTAGGTAGGAGCTGTCATTGATG------ATCCTTATTAGGTTAGTTTGGATTGTGGCAGTGCTATCAAATGTCACCAGGCCGACCAAGGATTCCTTTTCAATAATTTGAATTAAGTATAGCTCTGCTGCTTGGTTCATTAGGGTCAGACG
s HiC_scaffold_1 131118547 226 + 233722169 TTTTCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAA------GCTCTTCACCAGGGTGTCTTTTTCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCG

a score=6352
s chr3           144839021 264 + 160039680 TTTAACCTCGAATCCTTTTTTGAGTCCGTTGCAAATTGAAGTTCCGCCATTTGGGTATTGAGGCAG---CTTTGTGCTGATCGCTAGGTAGGAGCTGTCATTGATGATCCTTATTAGGTTAGTTTGGATTGTGGCAGTGCTATCAAATGTCACCAGGCCGACCAAGGATTCCTTTTCAATAATTTGAATTAAGTATAGCTCTGCTGCTTGGTTCATTAGGGTCAGACGAGTGATGGGGCTTCCCTGTTTAAACAAAAACATAAAGAA
s HiC_scaffold_1 131156836 254 + 233722169 TTTTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGTATCTCTTTCG---CTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATT---------CGAGTGA-GGCGTTTATCAAGctgaataaaaagcaaaagaa

a score=25060
s chr3           144841197 954 + 160039680 TTGTGTGTGCAGTTAAATTTTTCT-------TAGAACCAAAAGTTATGGGATAAAAA----ACTATCTATAATCTTA----TAACCCCACTTTAAC-CATTGT--TTTTTATCCCAG--TATTTCATTGGCATAAGCATCATTATTAGTTTATTAG----AACtaaaattaaattaaattataattCTGTATTTAGCTTAAATACTTAATTTAAGAAACCCAGCATATAA-TGTCTTACTAAGCGCATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGGGGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAAAAAAACCAATTAAAACTCTATGTTGTAATAATACATAATGGATCACCATTTTTTTCTCCCTTTTCCACATATGATTTTAGCTGCCATGCGCATCCTGAACCGGATTTGTCTCCTGA----CAAGAATTAC--TTCTATTAGATGCTTTGTTGTCCATTTCACATGGATGTGAAAGTGAG-----TAACGCTGTCAATACTTAGGGTCAATGCTGTTAGGA-GCTTTAAAATG-----AGAC--TGTCAGTGCA--GAATGGTCGCCACTCACGTAGTTACGTTAGCTTCTTGCTTCCTTATCTACAC-TTTGAGGACCGCCTCTTCTGA--ATTAAATGTAAGA--AAAGAAATGTATGGTTTCTGGTCATTTCT-GTCCCTTAAAAGTAGAATGAGAGAGATGACTCTTA-CTATGAATGCTCTATACTTCCATAGTGAGCCCAGAAACTTGGGGACATACACCCTAACAATCTAGCTTGTTATCAGTGCTTATGAGTTTGACACGTATAAATAAAAACCTTGGAAGATAAG
s HiC_scaffold_1 130988258 975 + 233722169 ttttttatttggtcaTGTTTTTCTGGTTAGTTAGAACTAAAAGTTAAGGAGTAAAAATTATAGCAGCCATAATgttacacttatttttattttaacatattctAGTACTTATCTAAAACTATTGTGTAGAAATTTGCCACAACAGAAATGTGTTAGCCAAACCTaagattaaattatatt-----------tttcatttaaatatgtaatttaagaGAGTAAGCAAAAAACTGTCTTACTGTAGACATGCTTCCAGATTTATCAAGTACCAAGCAGACTACTCGCTGTTGGGACTTGAGCAGTGAAAATGTAGGATGAGGTGGTGGATTTGTTCCTTTCAGAGGAATTGCATTCTGAAAATCAGGAGATTCACTGATTACATCCCATGTGCTTCTGTGATTgcacattttgttttgaaggttTGGAGCTTCTCTATTGTGTGTTTTTGCTGTGCAAAATTCAACCAcctggaaaaaaa--taattagaacacAATATTGTGGTAA-GTGTGAGGCATCACC----------TGCCTTTCCAAATATGTAGCTAGCTGCCATATGTACCC--AACACATTTTATCTCCCGGAGGTCCAGAATTACATTGTAATCAAATATTGTGACACACATTTTGCATATTTGAAGGAGTAAGCAAGATAAAGCTGTCACTATATTCTGGTGACGTTTTAATGATTCTTTTAGATATAGGTAGACTGTGTCAGTGGAGGGGGTGGCAGGCTGGGATTtgctaattttagtttcttattttCCCTTCTAGACTTTTGGGGAGCTCAAGTCGTGAATATTAAGTTTAAGATGAAGGAAACAAAGTG----TGGCAATGTCTAGCTCCCTAGATGT-GAGTAGAAAAAATAGTCTTTATCTAAATATGTTATGTATCTTCACAGTTGTTTGAAAAACTTGAGGGTGGATGATCTAATGGTCTGGATTGTTACTGCCTCTGGTgaatttta-acatacataaaagAATATTCCCAGAAAAG

a score=8867
s chr3           144841411 235 + 160039680 TAAGCGCATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGG-GGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAA
s HiC_scaffold_1 131249607 229 + 233722169 TACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCT-------CCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAA

a score=9279
s chr3           144841411 250 + 160039680 TAAGCGCATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGG-GGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAAAAAAACCAATTAAAA
s HiC_scaffold_1 131199258 244 + 233722169 TACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCT-------CCATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaatagaaa

a score=10635
s chr3           144841417 228 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGGGGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAA
s HiC_scaffold_1 131301497 222 + 233722169 CATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGG---TTTGTT---GTCATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAA

a score=9595
s chr3           144841417 233 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGGGGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAAAAAA
s HiC_scaffold_1 131034845 227 + 233722169 CATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGG------TGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAA

a score=9191
s chr3           144841417 244 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGG-GGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAAAAAAACCAATTAAAA
s HiC_scaffold_1 131085627 238 + 233722169 CATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCT-------CCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaa

a score=9858
s chr3           144841417 274 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCAGACCACTCGCTGTCTGGATTTGAGCAGTGAAAATGTAGGCAGGGGAGGGGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGAAAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAAAAAAAC-CAATTAAAACTCTATGTTGTAATAATACATAATGGATCA
s HiC_scaffold_1 131160959 269 + 233722169 CATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGG------TAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaaacatcattttgCTGCAAACCaccatatatta

a score=9194
s chr3           144841417 235 + 160039680 CATGCTTCCAGATTTATCCAGCACCAAGCAGACCACT----CGCTGTCTGGATTTGAGCAGT-GAAAATGTAGGCAGGGGAGGGGCTTCTGTTCCTGTCATGGGAGAGGCATTCTGA---AAGTCAGCAGACGCCTTGATTACATCCCACGTGCTTCTGAGATTGCACATTTTGTTTTGTAGGTTTGGAGCTTCTACATTGTGGGTTTTTTCTGTGCAGAATTCAACCACCTGAAAAAAAAAC
s HiC_scaffold_1 131343062 235 + 233722169 CATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCCATCC-----TGGACAACAGAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGG---GATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAAAAAGAGC

a score=64687
s chr3           144843411 4140 + 160039680 [encoded data, 4890 characters]
s HiC_scaffold_1 130990754 4479 + 233722169 [encoded data, 4890 characters]

a score=4321
s chr3           144844420 207 + 160039680 ATTGTGAGAAAAATGGAAAGCA--CTTACAGAATCGAGACTTTGCATGAACATGATGGAGCCCCTCGCAGTCTGGGATTTGTTTGGGATAAATGTACACTTGGCTTCCTGCATTCCTGTCTTTGCATCTCGACGACATCTCCTCGACACACAGCTGCCTCCCTGACACTCACGGACCACACTGGTGCCAGTGATGTCGGTGGAACACCT
s HiC_scaffold_1 131035358 209 + 233722169 ATTCTGAAAACAAAGATTGGCATACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTCTAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCT

a score=5343
s chr3           144844422 205 + 160039680 TGTGAGAAAAATGGAAAGCACTTACAGAATCGAGACTTTGCATGAACATGATGGAGCCCCTCGCAGTCTGGGATTTGTTTGGGATAAATGTACACTTGGCTTCCTGCATTCCTGTCTTTGCATCTCGACGACATCTCCTCGACACACAGCTGCCTCCCTGACACTCA--CGGACCACACTGGTGCCAGTGATGTCGGTGGAACACCT
s HiC_scaffold_1 131304181 205 + 233722169 tgggagaaaaaaataaggtaCTTACAGACTCAATACTTTGTGCAAACATTATGGAAGCCTTTGCAATCTGTTGCTTCTGTGGTATCAGCACACATTCTTTATTATACAGTCCTGTTAATTTGTTGAGTCTGCATGGTCCAACTGTACAACTGCCTCCCTGGCACTTAATTGTTTTATATTG--TCCGGTAATATCTGTTGAACATCT

a score=6098
s chr3           144844428 199 + 160039680 AAAAATGGAAAGCACTTACAGAATCGAGACTTTGCATGAACATGATGGAGCCCCTCGCAGTCTGGGATTTGTTTGGGATAAATGTACACTTGGCTTCCTGCATTCCTGTCTTTGCATCTCGACGACATCTCCTCGACACACAGCTGCCTCCCTGACACTCACGGACCACACTGGTGCCAGTGATGTCGGTGGAACACCT
s HiC_scaffold_1 131250245 198 + 233722169 AAAGATTGACA-CACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTCTAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCT

a score=5583
s chr3           144844440 187 + 160039680 CACTTACAGAATCGAGACTTTGCATGAACATGATGGAGCCCCTCGCAGTCTGGGATTTGTTTGGGATAAATGTACACTTGGCTTCCTGCATTCCTGTCTTTGCATCTCGACGACATCTCCTCGACACACAGCTGCCTCCCTGACACTCACGGACCACACTGGTGCCAGTGATGTCGGTGGAACACCT
s HiC_scaffold_1 131199909 187 + 233722169 CACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTCTAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCT

a score=4907
s chr3           144844441 186 + 160039680 ACTTACAGAATCGAGACTTTGCATGAACATGATGGAGCCCCTCGCAGTCTGGGATTTGTTTGGGATAAATGTACACTTGGCTTCCTGCATTCCTGTCTTTGCATCTCGACGACATCTCCTCGACACACAGCTGCCTCCCTGACACTCACGGACCACACTGGTGCCAGTGATGTCGGTGGAACACCT
s HiC_scaffold_1 131086263 186 + 233722169 ACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCT

a score=4918
s chr3           144844441 186 + 160039680 ACTTACAGAATCGAGACTTTGCATGAACATGATGGAGCCCCTCGCAGTCTGGGATTTGTTTGGGATAAATGTACACTTGGCTTCCTGCATTCCTGTCTTTGCATCTCGACGACATCTCCTCGACACACAGCTGCCTCCCTGACACTCACGGACCACACTGGTGCCAGTGATGTCGGTGGAACACCT
s HiC_scaffold_1 131161598 186 + 233722169 ACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCT

a score=6150
s chr3           144846293 223 + 160039680 CACCCAATACAGAGAGCTGAAGAGGTGTAAATAAGAAGTTGTAATCAGATTAGTTTACATAGTGATACCTTGTTGCTTCGACAGTGTTCTTTCTAGACATGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAGGATTGTGACATATAAATCTTGTTAAAACTATTTAA
s HiC_scaffold_1 131088103 214 + 233722169 CATTCATAATAACAGGTTAATAAAATGAAAGCCTGATGTTATGTTAAGAA-AATGTAAGTAGCCTTGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaa--------acatttcaaacatgataaaatttctcaa

a score=6021
s chr3           144846293 192 + 160039680 CACCCAATACAGAGAGCTGAAGAGGTGTAAATAAGAAGTTGTAATCAGATTAGTTTACATAGTGATACCTTGTTGCTTCGACAGTGTTCTTTCTAGACATGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAGGATT
s HiC_scaffold_1 131163347 191 + 233722169 CATTCATAATAACAGGTTAATGAAATGAAAGCCTGATGTTACGTTAAGAA-AATGTAAGTAGCCTTGCCTTGTGGCTTCAAGTTTATTTAACTCGCTCCTGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaacatt

a score=5894
s chr3           144846321 164 + 160039680 AAATAAGAAGTTGTAATC-AGATTAGTTTACATAGT---GATACCTTGTTGCTTCGACAGTGTTCTTTC--TAGACATGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAGGATT
s HiC_scaffold_1 131308740 165 + 233722169 AAGAAAGGAGCTACAATTTAGAATAGTTTGAGAAGATGAAATACCTTACGGCTT-----GAGGTCTTCCCCTGGATAAGTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACATT

a score=6536
s chr3           144846344 152 + 160039680 AGTTTACATAGTGATACCTTGTTGCTTCGACAGTGTTCTTT--CTAGACA-TGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAGGATTGT-GACATATAA
s HiC_scaffold_1 131251846 153 + 233722169 AATTTAAGCAGTTGTACCTTGTGGCTTCAA---TTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAA

a score=6536
s chr3           144846344 152 + 160039680 AGTTTACATAGTGATACCTTGTTGCTTCGACAGTGTTCTTT--CTAGACA-TGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAGGATTGT-GACATATAA
s HiC_scaffold_1 131201504 153 + 233722169 AATTTAAGCAGTTGTACCTTGTGGCTTCAA---TTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAA

a score=7022
s chr3           144846352 137 + 160039680 TAGTGATACCTTGTTGCTTCGACAGTGTTCTTTCTAGACATGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTGAGAGAGAGGATTGTGA
s HiC_scaffold_1 131037370 137 + 233722169 tagtcatGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAGGGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGA

a score=6833
s chr3           144846359 133 + 160039680 ACCTTGTTGCTTCGACAGTGTTCTTTCTAGACATGTAGAAAGGCCGGTCCATGTTATACTCATCAAATACTCCCCACCGGAGATGGGCCCACTCATGGACAAAGACTCTGCCTG----AGAGAGAGGATTGTGACAT
s HiC_scaffold_1 131346674 137 + 233722169 accttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGTGGAAGAGAGAAGTTCCTGACAT

a score=8172
s chr3           144846777 528 + 160039680 TTTGCTTTTCCCCAGTGGAAATAAGAAGTGTGAAATAGTTATTTCTACCTCGGGGTCCGTAGATACCCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCGTACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCGGCAACTATGACGTCTGCCTAAAA----CACAGAACAGCA--AACCCAGTCAGACTCCAGGCAAGAGACTTTACAAACTAGGACTGTCTCACTTAACTGATAAAGGCCATCTTCCTAGTTTCATTCCCGACAGAATTAGCATTCACCCAAAGGTACAAGGATTCATCTGTAAAAGGGACAGGAAGCAGTTTAGAAGATAGATGTGACACCTACTTGGTCATATGATTCTTGTTTTGGTGTTAAGTACTCAGTTTTTGACTTCCAGGTTATGGGAACTAAAATGCTCACGTTTCTGAAATAAAATCTTCTTTCTGTGGCTTCAAACAGGTAAGTGGAGGCTTGAGTTACCATTTCCT
s HiC_scaffold_1 131090932 473 + 233722169 TTTGCTTGT------TGAAAATTAGATATTTGGTGCAAAT-TTCCTACCTAATGGTCCATATTCAGCTTGTTTTTTTCCCAGAACAACATCAGGAGTCAAATGAATGTATTCTGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAGAAGAGCAGGAACCCATCAAGA----GGAGAAATGGTGATGTTTACTGAGACTAACT-------CTGCAACAATCTATGGTCTAAGTATGA--------AGATTCAGAAT----------------ATATTCCTTTCTG-------------------TTGGAGACGAATTTGAGACTTACATGTTTGTAGCTCTCGTATTTTGGCCTTGTGTATGCAGGATCTTCATTCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCT

a score=8423
s chr3           144846777 528 + 160039680 TTTGCTTTTCCCCAGTGGAAATAAGAAGTGTGAAATAGTTATTTCTACCTCGGGGTCCGTAGATACCCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCGTACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCGGCAACTATGACGTCTGCCTAAAA----CACAGAACAGCA--AACCCAGTCAGACTCCAGGCAAGAGACTTTACAAACTAGGACTGTCTCACTTAACTGATAAAGGCCATCTTCCTAGTTTCATTCCCGACAGAATTAGCATTCACCCAAAGGTACAAGGATTCATCTGTAAAAGGGACAGGAAGCAGTTTAGAAGATAGATGTGACACCTACTTGGTCATATGATTCTTGTTTTGGTGTTAAGTACTCAGTTTTTGACTTCCAGGTTATGGGAACTAAAATGCTCACGTTTCTGAAATAAAATCTTCTTTCTGTGGCTTCAAACAGGTAAGTGGAGGCTTGAGTTACCATTTCCT
s HiC_scaffold_1 131166170 473 + 233722169 TTTGCTTGT------TGAAAATTAGATATTTGGTGCAAAT-TTCCTACCTAATGGTCCATATTCATCTTGTTTTTTGCCCAGAACAACATCAGGAGTCAAATGAATGTATTCCGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAAAAGAGCACGAACCCATCAAGA----GGAGAAATGGTGATGTTTAGTGAGACTAACT-------CTGCAACAATCTATGGTCTAAGTATGAAGCTT--CAGAAT----------------------ATATTCCTTTCCA-------------------TTGGAAACAAATTTGACACTTACATGTTCGTAGCTCTCATATTTTGGCCTTGTGTATTCAGAATTTTTCTGCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCT

a score=6113
s chr3           144846812 166 + 160039680 TAGTTATTTCTACCTCGGGGTCCGTAGATA---CCCAAGTTATCAGTGAGTAGGAAGTTTGGAGTGAAGTGTATGTACTGTCCTCTGTCCCCACACTGTCCGTACTGAAGGGTGTAGGGGTCGTCTCCATGTTGCAGGTGAGGATCGGCAACTATGACGTCTGCCTAAA
s HiC_scaffold_1 131348952 169 + 233722169 TAGTTACACTTACCCCGTGATCCATAGCCAGTTATCAAGTCATCATTCAGTAGGAAATTAGATGTGAAATGAATGTATTTTCCCTCTCTCCCACACCCTCTGTACTGGAGGGTATGTGGGTCATCTCCATCCACTCCTTTCCAATCAGTCACTATGACATTAGCCTGAA

a score=4976
s chr3           144847157 161 + 160039680 CCTACTTGGTCATATGATTCTTGTTTTGGTGTTAAGTACTCAGTTTTTGACTTCCAGGTTATGGGAACTAAAATGCTCACGTTTCTGAAATAAAATCTTCTTTCTGTGGCTTCAAACAGGTAAGTGGAGGCTTGAGTTACCATTTCCT-------GACAAAACGAAAA
s HiC_scaffold_1 131351600 165 + 233722169 CTTACCTTTTCATATGATTCTTGTTTTACTTTGCTGTAAT---TGTTAGCTTTCCATGTGGCAGGTATCAATATCTGTATATTTCTGAAGAACACTCTTCTCTTGGTAGCATTGAAGAGGTAAAAAGAAGCTTCAGTTATCATTTCCTATACACCaaccaaaggaaaa

a score=41445
s chr3           144848545 3059 + 160039680 TTTCAGTTTAGTCATTAATTTTATGACTGTA--AATCACTTAAT--TTCTTACTTACGTAAGAGTTAGAGTCCTTCTTAGTCAGATCTTGGTCCTGAGAGGATC-TAAGAACTGAGTACATATTCCAGCACTATATGC-TAAAATCTTTTATTATACTGGTAAAAGTAAAAGTAGAA--ACAAATCAATTTTAAAACGTGTAAGATTTCTTTAAGGTAAGCCAGGTAAGGGTTTTCG-GTTTTCCTAAGTGGAGCTGGAGTGTGCATT-------------------------------------------------TGCTCTATAGTTTGTAAACCACC-----ATTACT------AAGATAGAGTGTGGAAAC-----TCCACTTGCTCTCAAGTCTATTACCTCACCTA------------------------------CTTAATAAATTATTAACAGCTTGACCATAGAATTTAATATATAATAAAGATATAAAGCTAAGCAGATTCCCATCTTGAC--TGAAGATAA-TACTGCAGACATGATGAAGACGGTCAAAGCGCCCCTTGGGAGGGTAAAACCAtatgtgtgagtgtgtaactgtgtgtgtgaatgtgtaactgtgtgtgtgagtttggatgtgCAGGCAACAGAATTATTGACCTGACAATAAAACCCCTTCTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCATATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGGAACAGAAGGACCTGCAGCCCTGGCACCATGGTCGCAC-TGCTCCAGTGAG----AAGGAGCAGCACAGAAGGGCATTTATGTGTGTGCTTCGCTCGGGAATTTGAATCACGGCCAGAATATTTGCATATAGGTGTTG-AGTGAAGTCCCCATATTTCTTGGTGACCTTCCTTATTGCTTTCATTCTAGAGACTTAACGGTTAAATGTTAGTGGGGATTAAGGTAAACACATCCATCGTTCTTTCTAAGGCA-CCAAG--------TATTTACTAAAGTGAGCTGTCCTTTCGGATTCTTTGTGAAGTCATCCTCATAGCTGTGGGTACT---TGTCATTGTGACCGTCTTCATCACTGCCACCATCATCATAAGGATACAGCCCCACAGGGCTGATGTCAG--GGTCTGTTTATAGGGCGAGGTTAGTAACCGATTAAAAAAAAAAGCAGGAAAGAGCAGATG-AAAAGGCTGGTGTTAAAAAGCAAACAACGAACAGGGCTGGAGTGGGCATGGCAGAGATTTATGACTTTATGTTCCTTCTCAAGAGGGGACTGTTAGAAGCACAATGCTTCAAAACTGGCCTTGGATCACGTGG-GACTTTCCTTTGTTATCTTTCATGATAGCTCCTAGTTTGTTTCAGCTTTCAAATGGCATTGAGTGTTCCATATCCTTTTGTAACTTGAGAACTTAATAT---------------------------------------------------TCTT---------CACCTGAGAGTTTGTTT---------------------------------------------TTTTTTTTTTTCATTGACTA-AAGTGCTCTATAGCTTGAGTCGGTTGTACCGTGTCATCATGAGTGTGCTCGAAGCTGGCT---GAAT--------------GTGAGCCCAACTCCTTCTTGTCCTGGTCACTTAAAAGTCACATATTTCTCTGTTAGGGTTGTATGACTTTATTTTTTTTAAGCTTTGTCTTTTGTAAAATATCTGAAT-TGTTATgagatgttggaactgctaaatgaattaatccatggaaaactcttcacaccaagtgtctggaactcctaa----taaagagacagtaaata---------------gCGTGTGTTACA-----TGTTATAGGCTATT-----------------------TTGCTAATCAGACGAATCTGCC----------------------TGAGGCAGAGGGAGACCT---------------------GTGTTGTCAGAGTAATGACTGTAGCTTCTTGGAAAGCATTTATCTTTGACTGTTGGCATGATCTTACCCTTGCTAGTCCAGGCAAGATGGGGAAGCATCTTTAAAATTCTTCCTAAAGAAATATTTTTCTTTTCTTTGGA----TTTGCTTGAAGCACTGTTATACATATACATAC-TCAGAGCTGCTTTTGCTATT-CTGGCATACATGACTTGTTTTTCTCTACTAGATTGTAAATTGGGT-CAGAGGTGAGAGATTTTTGTTTCTTT-CTGtctctcagtctcaattttcttacctgtaaagtaagaacaataatacctg--taaaaggagttttgtgaaggttaagt-aaacaatgtgtgAATCTGCCATTTAACTTAGTTAATGGTTTAGTGCCTGCCATTTCTCCCTTACACAGTAAGACCATGTTGCAAGCAAGCAAACAAGCAAAATGATAAAGAAAAAAAAAAGATCTGTGAAAGACATTATTGTCCTATTCTGTCACATAGTAGACCTCAACAAATTAATGTTTATTCCTTGATTTTCTTGTATTTTTCAATT--CATGTGAAAAAAATTGAGTGCTT-CATGTGCATCACCCAGTGCTCTG----TGGTCAGGCACAGACATGAG-AAAACTCTGGCGTTGTCTCCAAAGGATTCAGAGCCTTGTCACATGGGTTAGATTGGACAGATAAAGGATTTAAACACAAGTCAGAGGGAA------------AGATGCTGCTTAGCA------CAAGGAAGCCAAA---TGGGAATGACTTCTCTCAATGAAGGGAGTCACAAAAGCACTTGGGGTGGGTCATTCTTTCCAAAATGGAAGCATGAAGAAG----CTAAGTCTCATAGATTACAATTCCAGAAAGGGGCATCTTTGATTTTTAATCTTGAGCCATTTGCCT--CAAGGCTATAGTTTGAAAAAATATGGGACATAAGCTATTTTTTAAAGGATGACTAGAAAGGAACTCATCTTAAACTTATTTTGAGAGTTTACTTGTTTGTTTACTGTTTGTTCTA--AACAGTAGTTGTCAGTAGAAGAATCAAGGGACTGTGGAATGCTACGCTTGACTTTGTACGGGACGGAAAAGCTtctat----tgttatctattgtcgtctattgtcatctatATGATGAAAGGCTCATC-----CTTAAAAACCTCAG-----------TTTAGGATTCTTTCAGTACTTAATTACTCAGTTTTGAAAAACTCAAGG-CAGAAAATATTCCCACGCCATTTTCAA-CTGGATTTGAAATCAAAGTGGAGAACAGTA-GAGGTAT--TATTGTCAGAAAATTCTAGAACCATCATTTCTCTATGTCTTTAACTCGTCTTT
s HiC_scaffold_1 130995665 3175 + 233722169 TCCCAGTTATGTCACTTACTATA-GACTGTATGAATCACTTAATCTTTctcatttatagaaaa---aaa---ctTAATAATC----CTTGTTCTTGACCATCTCATGAGAACATAATATATATG--AACATCTTACACATAGAGTGTCTTATATAAGTAATGCAAATAAAATTAGGATAATAAATCAGCctcaaaatatgtaatattttctt----taaaacaagtcatgatttttgtgtttttcaaagctAAGCAAGTATGAGCAACCAGGGAAATGTGTAAGATAATGAAATTAAGTGtagtttagtggcataagtgtGCTGCAGTTATTTGACTTCCTCAGAGTAACTTTATTGaagatgaaatataaaaacattttcctgtttGCTCTAAAGTTTTTTCTATTAGATAGCTGGTTGCAATAATTAGTACTTTGGTGTTTTTAATAATTCATTAAGGGAATGACTACCAGTATTAATATATAGTGAAAACATAACACTAAGCAGATATTATTCTTGACCATTTAGATAAATACTACATAAATGGTGAATACTTACAAAGCAACTTTGGGAAAT---------------------TGTGATTGTATGAGTG----------TGTCTATGTGAAAATAgttattgagataaaaatatg------tggataataaaattttctcttaccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTTCACCTCAGGCAAGAGATGCAAAGCTAAGAGCAGAATAACCTTCAAACTGAACATCGTAATTACACAAACTACAATTAACCttacagaa-aggaaaggagaatatTTATACATCTGTTTAACTCAGGAATTTGAATCAAggcaaaaatatttgcataaatatgGTATAGTAAAATATTACAGTTTCTTGGTGAACTTCCTTATCTTACTCATTCTAAAGACTTTGTTGTTAAGTGACAGT-GGGCTAATATTCAAGACATTAATCATACTCTCTAAGACAGCTAAGTCATTGTATATTCATTGAATTGAACCTTTCTCTTAGATTGTTTGTGTGATCATCTTTGTAGTAGTAGGTGATTACTGTCATTGTGATTACGCTCA----------AATAGTCTTAGAGATATAAGTCCTCAGATCTGCTTACAGAAAGGCATTGTATAGCATGAGG-----AACTGAATGCAAAAGtgc-caggaaaaagcagatgaaaaaggctcacattaaaaa-caaaaaatcaaaagccaCAAAATAGGAGTGGCAGTTAAtgaagaatttgtattttttt---agttagGAGTGATGTGAACACAGTGGTTCAAAA-TACCTATGTGTCAGGGGGAAACTTTTTAAAGTCACCTTCTACAATAGCTGATTGTTTATTCCAGTTTTCAAGTAACATTGGATGTGTTAAATGC-TTTATAACCAGAAAAGtttatatgaaaattaataaacaggggctggggatttagcttagcggcataagtgcctcccttgcaagcaggcagtcgtgagttcgatccctggtactgataaaaagacaaaaaaaattaataaacaattaaGATTTCTGTTTTGAATGGAGCACAAATGTTTCGTAGCTTAAAATAATAGTACA----------CAGGGCACTGAGAACTGGCTCTGGAATCTTTTAACATTCACGTGGTTCTTGTTCACTCTTGCCTTAGTCACTTAATATTCACATGATTCTA----AGAGTAATGTGGC----TTTTTATTAGGC--CATCTTTTGT--GATAGGAGAATAAATTATGGGATTCAGAAA--ACTAAATGAGATAATCTATGTAAATCACttcagacaaaatatctg--acacctaagATTTCAATACATACTACATATTATTACTAAACATTATATATGTTATAAAATTTACTATAAATTTCTGCAAACTAAATTCTACATTTCAATTgcttattttataaaactgtcaATGCAGTGTTCCAGTGTTTAACAGGGGAATGAAAAATCTCTGGGCCAAAGACTAGATGAGGAGCAATCAGAGTGA-AACCATAGCTTTTTGGCTA-TATTCATC---GATTATTGG------------CTTATTGGCTCAGCCTAGATGTGGCCAAATTAGTCACACT--------ACAAGTAACTTGCCTT--TTTGAAATATCTTGTTTAAGCCA-----ATATGTTGACATACACCTGTGTTCCTTTTGTTATTGTTAATGTACACAG--TATATCTCCTTACTAGG-TATAAATTCCTTgcag----gaaagatttttttaagtttaatttctctcaactttaatttccttaactgtaaaatggagatagtaACATCTGTTTGGAGGGAATGTTGtgatgattaaatgaaataacatgTGA-------------------------------------------------AAGCAGT-------TGTTGTAAG-------------------------------------------------------------TGTTGGTGCACAATAGACCT---TCAATAAATGCCTAGTTTTCAACATT-TTAtgccatttaatttgtatttaaaaataggtGAGTGCTTGTATGTGCCAGGTCCAGTGCTGTGCTCCTTAGCAAGTccagaaatgaataaaacacaCGCATTGTCTGCAAGGAATCTGAAGACTTGTTGCTTGGATAGGATTGGGACAAAAATACGTTAAAACACAAGATAAATAGAAGTTCTATAAGAGAGGTG----TAAGCATATTGTTAGGGAACCCAAAGTTGGGGAATAGTCTATAT-GATGAAGACAATCAAAAAagctttt--------tcattctttacaaaACTGAAGTATGGAGAAGTTAATTAATTTGCCTAGATTATACTTTAAGCAAGAGACAGCTCTGGAGTTTAAACTCAGGTAACTCGGTTTCTGagtctatattttt-taaaatttgggacATACAATACTTTCAAAAGGTTGATGAGAGA-AAATtggttttgaaattattttgaa-----actgatttcttt--tgttttttccattgaTAGTGGTTGTC---AGAATATTTGAGAGAACATAGCTGGCTATGATTGACTTTGTATAATTCAAAAgaatttctgtcttgttttaacTATAG--GCTGAATATcaatttttt--tggttggtttgcCTTGAGTTCAAAAACTTTGgagttaatttcatttaaaa-tctttCAGAATTTATTCAC----TTTTGATAATTTCAAGGACAGAAAATA-TCTCGAGTCATTCTTAAGTTGGATCTGAAACTGAAGTGAACAATAAGACGAAGAATCATACTCTTACAAAATTCTAgaagtttaatttcttt-tattttcatccttttttt

a score=5651
s chr3           144849117 159 + 160039680 CCTTCTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCATATCCATTGCTGTTGAGATGCACCATGGAGCTCTCTGTGTTCTGCAGGAGATGCAGGGTGA----GGAACAGAAGGACCTG--CAGCCC
s HiC_scaffold_1 131218929 165 + 233722169 CCTCCTTACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAGCCCCACAGCAGGTGCAGGACTAAGAGGGAAGCGAAGGCTCTGAACAGCCC

a score=3961
s chr3           144849121 95 + 160039680 CTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCATATCCATTGCTGTTGAGATGCAC
s HiC_scaffold_1 131352558 95 + 233722169 CTCACCTTAATGTTTGGGATGAGATTCTGATTCTCAGGTACCCATGGATTAATTGCGACGAGTAATCCATCATATCCATTGTCTCGAAGCTGCAC

a score=5191
s chr3           144849121 172 + 160039680 CTTACCTTTATGCTTGGGATGAGCCTTTCGTCCTCCGGCACACTGGGGTTAATGGCAATGACCACACCCTCATATCCATTGCTGTTGAGATGCACCATGGA---GCTCTCTGTGTTCTGCAGGAGATGCAGGGTGAGGA-ACAGAAGGACCTGCAGCCCTGGCACCATGGTCGCAC
s HiC_scaffold_1 131313332 175 + 233722169 CTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGACGGAACT-CTTCCATGATCCCATGGCTGCAC

a score=44957
s chr3           144860849 2354 + 160039680 GTGTGAATTTATTCTTCTCAACCTCCTTTCTTTCTTTCCTTAACTCCTTTCCATCAATATGCTTGAGACCCCTAGATTGTGCCTCTGAGTGATGGATTAAAATGTATCTTTAACATATGTTGCTTTTTTCTCTCTGAAAA--AAGTCAATAGTCTATAGCTTCAACAATTCTTTCTTAAGATGAAAG---AAATGTACATGGG-TAGGGTTTCACAAGAAAAG---AGGTGTTTAGGTTATATTGAAATAAAAACAGGTGGTATCTGATCTTTTAAAAACCCAGTATGTACCTGggcccagaataaagagttgctgccaaacaagacaacaggagtttggttcctaggacccacatgaaggaaggagaaaacccattctcacaaattgtcttctgatctccacatccacatgactgcacatacatacatacataTTTGCATACATACAtgcacacatatacacacgtatgtatatatatatatatacacacacacatatatatatatgcatacaaaaataaatataagtTAAATAATTAAAATAGTACCTCCTATATCCATGAATTAAAGCAAGTATGACTTTCAATATGATAACGTTGAGTTGTAGGTTTTGAGTTACTATTATGCCATTAACTTATACTGATAATACCAAGACCACGTTCCTTTTTTTCCTGTAAATGTTGTTGATCTTCTCTTTTATATTGTATCTTGGCTAATTAAATAGAGACTTTGAATTTCTTCAGGCAATTTGAAGTATCATTTCATAAAACTTTTGCATCAGAAAAAAATATACAACTAGAGATCAATATAAA--AGCAGTTTTAATTATCACTGT--------------AAGTGAAT-----AAAATTATAAACAT---TAATATTGGTAGTTTTTCACAGA--------ATGGGTGTGA--------------TTAAAGTATCTTTTAGAC-CCTCTTGAAATTATTTTTG-AATTCATGATATAGGATATGC-TTTAAAAACTCAGAAATATCTTTTGATT----CATGTTACTTTTCAAAATTTTGTTATAGCTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACCTACAATAATACAAACTAGAACAACAGCACCCAAAACAGATAGCACAATAGTAGAAACACTAACTCC----TGAT-----------GAACTTGGA---------CTTTCATCAGGGTCAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGAGAAAAATGTTATGTGTTGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTC----ACAATATTAAGTCATATA----------------------------TCAACAGTCTTATTCATTTTTCTGTAAAAGCTGAGTTCTGACTttcatttattaattcatcttatcttatttatttatttatttttggtttttcgagacaggatttctctctacagtcctggctgtctggaaactcactgtgtagaccaggctggccttgaactcagaaatctgcctgcttctgcctcccaagtg----ctgggattaaaggtatgtgccaccattgcccga--ctGTGTTCTGACTTTTAAAGACAGCCA--------------TGCAGGAAAATCAAGACC--------------------TGTTTCATAAAA--TCCTAAAATTCCCACTTGGCTGAGTTGTCAGTTAAGTGCTCTCCTCTAGCTGACATATCTGCTCTTGCTTCACCCTGGA-CATCTCTCGCT-CATGTCAAACCCAGAGTGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGGACCACTTGGAACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAGGACTGGCTTGAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGCATTTAAAATTCTCTAGTT--AAATTGG----ATGGAACTCTAGACTTTTTAGAACTCAGTCAGACAGCTTCCTGACCCTCCTTGTCTTTTCTTTCTTCTTTCTCTTTTCATTCCC----AAGCTTTCATTTTTATGATGTGTCACAATCAAAGCCTT------CCATTTGTGGGAAAAGGCATCCTCCAGAATTATTACCAGGATGTAATCAAATCAAATTGGACAATAACTTGCGGTGATATGA
s HiC_scaffold_1 131106886 2198 + 233722169 GTGTGAACCAGGTCTTCTCAACCTGCATTCTCTCCTAAATGA--TCTTTCTCAGTAATATGGTTGCAACTCCCAGGCTGTGACACTTAGTGAtgaatgaaaatatgtttttaatatgtatt-tttttctttttctgaaaataaagtcAACAGATTATTGCTTCAGTGATTCTTTTCcatgatgaaaacaaaaatatatagggACTATGGCTATTCaaggaaaagataaatgtttGTGTTGAACTGAAGTTAGGAAA------ATCTGTGGTTTGACAGGT--Agtgtgtg---------------------------------------------------------------------------------------------------------------------------------------------atatttttat-----------------------------------------------------------------------------------------------------tagtttctcCCATACTCATGAATTGCAGGAA-TAGCAATGTAGCCATTATAATGTATAACTGGAGATTTCTGGTGAATATAATGTCACCAACTAACATTGATAGCACCAACACCAAATCAATGTTTCcc----aaatattatttatttggtattttaatctgtgttttgAATACTGAAATGGACAATTTTAGCTTCTTTATGAAATT--GAACATCATTTTAGAAAAGAATT-CATCACAAAATGATACACAACTAGGGATCAATAGGAAGAACTATCTTTATTCATCACTATgataaagataattaaaatgaattaattaaaatgataaatataattaacaaaatgAAGTATTCACAGTTGCTCTATATATTTGTGAAGTGTTTATTTCTACCAAAATATCCTTTCTAGGCTTCTTAATATAATTTTTGTAGTTCAGGACTTTAAGGATGAATTTAGGAATTCAGAGATACcttttacttatattattttgatttttaaaaccctGTTCTAGGTCTGTTtgaagagtttttcttttttaatatacaaATAGTAGTACCTAAAATAATACTAACAACTACAATAGTCCCTACTACTGACAAGACCAGAATAGAAATATTAACTCCAGAATGATAATTTTTATCAGGACTAGGATTAGAACCACTTTCATCAGGACCAGGATCTGCTACAGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATGTATCGTTCAACTAAGAAAAA-ATTACATCCAGTTCAGTAACTGTAGAATGTTGTattaaatttctttccatttattcttGAAGATATTCTTTAGTTATACAAAGTATACcgttgggctggggatataactcagcagtgcag--cacttgcctggaaagtgtgaggtcctgagttcaatttgcaatacacc--------------------------------aaaaacaaaaaaatccaaaacaaac------------aaacaaac---aaacaccaaaccaaac--aaaataaaaaatcaac---------caCCCCAAATATATCCTTATTTCAAAGGTCTTAGTGATTTTTACTAAaagctacattttcatttttaaattctgccAAATGCTACTACCTTAGTATGAAAAGAAGGGTCATGGTAAAACGTGTCATGTTTGATTGATAAAAGTTTCTGAAGTTAGCAGTATGCTGAACTGTCAGGTAC-TATTCTCCCTTAAGTTACTCTTATACCCTTGCTTTAGCAAAGAGCATCTTTAACTACATGAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTTTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAAGTCTGTGATTTGACTGGGTGGGTATAGGTCAGCGACTGCATTATTTTGATATCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTC-AGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATTTCCCCTACATCAAATAGTTTCTGGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTCACAACATGGTGAAACACTTCCCTTATCtcgtttgacttttttttttgc----------cataccCACAGAAACATTTGGCTAAGTCTTGTGACACAATATTACTCTTGGGAAACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGAGTAAAAATAGATAACAAATTGCTGTGTCCTGA

a score=44603
s chr3           144861372 1690 + 160039680 ATAATTAAAATAGTACCTCCTATATCCATGAATTAAAGCAAGTATGACTTTCAATATGATAACGTTGAGTTGTAGGTTTTGAGTTACTATTATGCCATTAACTTATACTGATAATACCAAGACCACGTTCCTTTTTTTCCTGTAAATGTTGTTGATCTTCTCTTTTATATTGTATCTTGGCTAATTAAATAGAGACTTTGAATTTCTTCAGGCAATTTGAAGTATCATTTCATAAAACTTTTGCATCAGAAAAAAATATACAACTAGAGATCAATATAAA-AGCAGTTTTAATT-ATCACTGT--------------AAGTGAAT-----AAAATTATAAACATTA-------------ATATTGGTAGTTTTTC-ACAGAATGG--GTGTGATTA---------AAGTATCTTTT--AGACCCTCTTGAAATTATTTTTG-AATTCATGA-TATAGGATATGCTTTAAAAACTCAGAAATATCTTTTGATT----CATGTTACTTTTCAAAATTTTGTTATAGCTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACCTACAATAATACAAACTAGAACAACAGCACCCAAAACAGATAGCACAATAGTAGAAACACTAACTCC----TGAT-----------GAACTTGGA------------------------CTTTCATCAGGGTCAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGAGAAAAATGTTATGTGTTGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTCACAATATTAAGTCATATATCAACAGTCTTATTCATTTTTCTGTAAAA------GCTGAGTTCTGACTttcatttattaattcatcttatcttatttatttatttatttttggtttttcgagacaggatttctctctacagt---cctggctgtctggaaactcactgtgtagaccaggctggccttgaac----------tcagaaatctgcctgcttctgcctcccaagtg----ctgggattaaaggtatgtgccaccattgcccga--ctGTGTTCTGACTTTTAAAGACAGCCA--------------TGCAGGAAAATCAAGACC---------TGTTTCAT-------------AAAATCCTAAAATTCCCACTTGGCTGAGTTGTCAGTTAAGTGC---TCTCCTCTAGCTGACATATCTGCTCTTGCTTCACCCTGGA-CATCTCTCGCT-CATGTCAAACCCAGAGTGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGGACCACTTGGAACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAGGACTGGCTTGAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGCATTTAAAATTCTCTAG-TTAAATTGGATGGAACT---CTAG---ACTTTTTAGAACTCAGTCAGACAGCTTCCTGACCCTCCTTGTCTTTTCTTT
s HiC_scaffold_1 131183824 1793 + 233722169 atatttttattagtttctcCTATACTCATGAATTGCAGGAA-TAGCAATGTAGCCATTACAATGTATAACTGGAGATTTCTGGTGAATATAATGCCACCAACTAATATTGATAGCACCAACACCAAATCAATGTTTCcc----aaatattatttatttggtattttaatctgtgttttgAATACTCAAATGGACAATTTTAGCTTCTTTATGAAATT--GAACATCATTTTAGAAAAGAATT-CATCACAAAATGATACACAACTAGGGATCAATAGGAAGAACGATCTTTATTCATCACTATgataaagataattaaaatgaattcattcaaatgataaatataattaataaaatgatgTATTCACAGTTGCTCTACATATTTGTGAAGTGTTTATTTCTACCCAAATATCCTTTCTAGACT-TCTTAATATAATTTTTGTAGTTCAGGACTATAAGGATGAATTTAGGAATTCAGAGATACcttttacttatattattttgatttttaaaaccctGTTCTAGGTCTGTTtgaagagtttttcttttttagtatacAAATAGTAGTGCCTAAAATAATACTAACAACTACAACAGACCCTACTACTGACAAGACCAGAATAGAAATATTAACTCCAGAATGATAATTTTTATCAGGACTAGGATTAGGACCACTTTCATCAGGACCACTTTCATCAGGACCAGGATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAA-ATTACATCTAGTTCAGTAACTGTAGAATGTTGTattaaatttctttccatttattcctGAA-----------------GACATTCTT-----TTGTTATACAAAGTATATCGTTGGGCTGGAGATATAACTCGGCAgtgcagc-------acttgcctagcaagtgtgaggtctt--------gagttcaatttgcAATacgccaaaaaaacaaaaaaatc------caaaagaaacaaacaccaaaccaaaacaaaataaaaaatcaac---------caCCCCAAATATATCCTTATTTCAAAGGTCTTAGTGATTTTTAATAAaagctacattttcatttttaaattctgccAAATGCTACTACCTTAGTATGAAAAGAAGGGCCACGGTAAAATGTGTCATGTTTGATTGATAAAAAATTCTGAAGTTAGCAGTATGCAGAACTGTCAGGTAGGTACTATTCTCCCTTAACTTACTCTTATATCCTTGCTTTAGCAAACAGCATCTTTAACTATATGAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATGGGTCAGTGACTGGAGTATTTGGATACCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTATCTC-AGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATCAAATAGTTTCCAGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTTTACAACTCGGTGAAACACTTCCCTTATCtcgtttgactttttttt

a score=53687
s chr3           144861375 2831 + 160039680 ATTAAAATAGTACCTCCTATATCCATGAATTAAAGCAAGTATGACTTTCAATATGATAACGTTGAGTTGTAGGTTTTGAGTTACTATTATGCCATTAACTTATACTGATAATACCAAGACCACGTTCCTTTTTTTCCTGTAAATGTTGTTGATCTTCTCTTTTATAT-TGTATCTTGGCTAATTAAATAGAGACTTTGAATTTCTTCAGGCAATTTGAAGTATCATTTCATAAAACTTTTGCATCAGAAAAA-AATATACAACTAGAGATCAATAT--AAAAGCAGTTTTAATTATCACTGTA-----------AGTGAATAAAATTATAAACATTAATA-TTGGTAGTTTTT-----------CACAGAATGGGTGTG-ATTAAAGTA--TCTTTTAGACC-CTCTTGAAATTATTTTTGAATTCATGATATAGGATATGCTTTAAAAACTCAGAAATATCTTTTGATTCATGTTACTTT-----TCAAAATTTTGTTATAG--CTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACCTACAATAATACAAACTAGAACAACAGCACCCAAAACAGATAGCACAATAGTAGAAACACTAACTCCTGATGAACTTGGACTTTCATCAGGGTCAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGAGAAAAATGTTATGTGTTGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTC----ACAATATTAAGTCATATATCAACAGTCTTATTCATTTTTCTGTAAAAGCTGAGTTCTGACTttcatttattaattcatcttatcttatttatttatttatttttggttt-----ttcgagacaggatttctctctacagtcctggctgtctggaaactcactgtgt--------agaccaggctggccttgaactcagaaatctgcctgcttctgcctcccaagtg----ctgggattaaaggtatgtgccaccattgcccga--ctGTGTTCTGACTTTTAAAGACAGCCAT----GCAGGAAAATCAAGACC--------TGTTTCAT--------------AAAATCCTAAAATTCCCACTTGGCTGAGTTGTCAGTTAAGTGC---TCTCCTCTAGCTGACATATCTGCTCTTGCTTCACCCTGGA-CATCTCTCGCT-CATGTCAAACCCAGAGTGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGGACCACTTGGAACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAGGACTGGCTTGAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGCAT----TTAAAATTCTCTAG-TTAAATTGGATGGAACT---CTAGACTTTTTAGAACTCAGTCAGACAGCTTCCTGACCCTCCTTGTCTTTTCTTTCTTCTTTCTCTTTTCATTCCCAAGCTTTCATTTT---TATGA--TGTGTCACAAT-CAAAGCCTTCCATTTGTGGGAAAAGGCATCCTCCAGAATTATTACCAGGATGTAATCAAATCAAATTGGACAATAACTTGCGGTGATATGAAAACTGCCCCGAATGAGGATG---TTATGTAATTTGTTATATG-AATTAACAGAACAAAACAGATCCAAAATCAAACaggcaggcatgacacctaggctagcctcaaatgtacttaagtagccaaggatgaccttgaaatccgtatcctccttcctgcctctgtcccctacgtcctggg-atcacaggcatgtgtcaccaggcTTCCCTAACATGCGCCTTACGAAAAGTATTGCTTTATTTCTCAACTTATTTCTGACTAGAAATGTGTCTGGGGAAGGCAAAGCTAGTTCTGTCCTTAACACTCGCATGGCTTCCTTCCCTCCAAGCTGACAGTGCTAAGAAACAAGTCTCTCAACTTCTCCATTGCTTAGCTTCCCACTCTCCATATAAGGAGTGAGGAAAGCAAAGCCGAAAAACATGGACGCCTGTGGAACTCAGAGGACAGACTGCCCA-CTGGTCTGCACTTCTGTTCCTAGCACAAT-GACCATTTCCTCTGTCCGTAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCACAGTAACA-AATACTAGCTGATAGGTTTTTAGCATCTATTGGTTGCTAGGTTTTGATT---GGGTTAACGTAGAAACAATTGTGTAATAATC-----TCACAATAGAAATGTTTGTAGTTACATTTTGAACTGTTTGCAGCCTCCACCATATGAAGTCACaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATTCACT-----------GGGTTTCTGATACTGGGACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGATTGGTGTGTGTTGTCACACATGCAT
s HiC_scaffold_1 131233856 2734 + 233722169 attttactagtatCGTC-ATAATTACAAATTGTAGTGAAAATGAACTCATCAGTTGTAGTGTATATCTAGAGATTTTCAGTGACCATAATGCCAGCAATTAAAAACAATAGCACCAAAACTCAATACATTCTTCCC----AAatattatatactttat-ttttatacatgtattttgaataatcaaat-gacacttttaatttctttataaaatttga-gcataattt--taaaagcagttcaCCACAAAAATAATATACAACTAAAGGTCAATATGAAAAAGGATCTTTATTCCTCATAATTTATGATAAAATAGTGAATAAAACTCTTAACATTGAGAATTGATAGCTTTTTCACATGTCTACATAGTAtttatatttatcaaaataaCTCTTCTAGACTTCTATTGTAGTT---TGAGAACTCACtggatgaaat------taaaaattcaggaaTTTCCTTT-ACTGATGTTGGTTTGGCTCTTACAAATGTGTTCCAGGGCTGCT--tgaagagtttttcttttttatgacacAAATAACGGTACTTAAAATAATGCTTACAACTACAACAGACAGCACTACTGACAACACCACAGCAAAAACATTAACTCCAGAAGAATT---ATTTTCCTCAGGATCAGGATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGACTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTAGCTTCCTTTGGCACCAGGTCAGTGGTGTTAACTTGAAGAGCAGCATCAAAATTGTCTCTCAGCTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAA-ATTACATCTAGTTCAGTAACTGTAGAATGCTGTattaaatttctttccatttattcctGAAGACATTCTTCAGTTATACA-----AAGTATaccc---------------ttgggctggggatataactcagcagtacggc-------acttgcctagcaagtgtgagatcctgagttcgag--------tcccagtac---cccaaaaaacaaaaaattcaaaatacacaaacaaacatcaaaccaaaccaaaattaaaaaatcaac---------caCCCCAAATATATTCTTATATCAGAGGTCTCAGTGATTGTTAATAAAAGCTACATTT---CTGCCAAATGCTACTATCTTAGTATGAAAAGAAGGACCAGATAAAATGTGTCATGTTTGATTGACACAAAAATTCTAAAGTTAACAGTATGTTGAACTGTCACTTAGGTACCCTTCTCCCTTAAGTTACTCTTATACCCTTGCTTTAGCAAAGAGCATCTTTAACTACATGAATAAGACACACGACACTTTGTTCCTACCTTTTCCAACATCAAAATTCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATGGGTCAGTGACTGGAGTATTTGGATACCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTC-AGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATGAAATAAATAGTCTCCAGTTTCAAATGGGCAAAAGTGAACTGGTCTTTTTTAAACACAGTGAAACACTTCCCTTATCtcatttgtc--------cttttcttttttgccataTACACAGATACATTTTGGCTAAGACTTGTGACACAATATTAAGATTCAAATTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGGGTAAAAATAGGTAATAAATTGCTTGGGAATGATGGC-ATATTtaataagaataattttatataattaaatgtatGCCCTTGTTCTCTCAAATTATCTCCAA----------GTGAGAAACATACCTGGGAAAATTTCTAGATCCCTT------CCAAGTATTTC--------TAGTTTCTTCCTT-----CTCTGCTGCAAATACTATGGGTATTGCA----------------------------ACTGCTAACAAAAAGCCTTGGAGAATCAGTCAGAAGATCAGGGGAGAAAAAAGGGAC---AGATAGCAAAGACTgcagtg-------cacatgcttggcatc---------------aCCTTACTAA-----------CACGGATTTTCTTTTG----ACTTC------------------ATGAGGCAttctaaatatttaatgttaGAC-CATGTATAATCTGAAGGAAAAATCCTGCATCTGACttgtatttatgtttattatatattaGATTGTTTTCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCATCCAGGTGTTCCAAAGTAACATAATACCAGCTGGCCTA-TCTGAGTACTCACTAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAGGACATCTGTA-TTGAGTTGTGAAA-GGAAGCCCCCTCTCTCATACCAAATTGCAAATA--------------------------TTACTCCAGCCAGCACAGGTTTCAGGTAGCATGAGGCACTCACCGTCCACTACCCAGCCTGGTATATATGCGGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaacaaatt--attactgaaaataagacaataaatatatgcattttcTGAGACAAGCAT

a score=58460
s chr3           144861427 3201 + 160039680 ATGATAACGTTGAGTTGTAGGTTTTGAGTTACTATTATGCCATTAACTTATACTGATAATACCAAGACCACGTTCCTTTTTTTCCTGTAAATGTTGTTGATCTTCTCTTTTATA-TTGTATCTTGGCTAATTAAATAGAGACTTTGAATTTCTTCAGGCAATTTGA--AGTATCATTTCATAAAACTTTTGCATCAGAAAAAAATATACAACTAGAGATCAATAT--AAAAGCAGTTTTAATTATCACTGTAA---------GTGAATAAAATTAT-AAACATTAATATTGGTAGTTTTTCACAGA---ATGGGTGT--------GATTAAAGTATCTTTTA-GACCCTCTTGAAATTATTTTTG--AATTCATGA-TATAGGATATGCTTTAAAAACTCAGAAATATCTTTTGATTCATGTTACTTT-----TCAAAATTTTGTTATAG--CTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACCTACAATAATACAAACTAGAACAACAGCACCCAAAACAGATAGCACAATAGTAGAAACACTAACTC------------------CTGATGAACTTG---GACTTTCATCAG-----GGT-CAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACT--GAGAAAAATGTTATGTGTTGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTCA-CAATATTAAGTCA---------------TATATCAACAGTCTTATTCATTTTTCTGTAAAAGCTGAGTTCTGACTttcatttattaattcatcttatcttatttatttatttatttttggtttttcgagacaggatttctctctacagtcctggctgtctggaaactcactgtgtagaccaggctggccttgaact--cagaaatctgcctgcttctgcctcccaagtgctgggattaaaggtatgtgcc-----accattgcccgactGTGTTCTGACTTTTAAAGACAGCCA--------------TGCAGGAAAATCAAGA----------------CCTGTTTCATAAA--------------ATCCTAAAATTCCCACTTGGCTGAGTTGTCAGTTAAG---TGCTCTCCTCTAGCTGACATATCTGCTCTTGCTTCACCCTGGACATCTCTCGCT-CATGTCAAACCCAGAGTGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGGACCACTTGGAACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAGGACTGGCTT--GAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGCATTTAAAATTCTCTAGTTAAATTGGATGGAACTCTAGACTTTTTAGAACTCAGTCAGACAGCTTCCTGACCCTCCTTGTCTTTTCTTTCTTCTTTCTCTTTTCATTCCCAAGCTTTCATTTTTATGA-----TGTGTCACAATCAAAGCCTTCCATTTGTGGGAAAAGGCATCCTCCAGAATTATTACCAGGA---TGTAATCAAATCAAATTGGACAATAACTTGCGGTGATATGAAAACTGCCCCGAATGAGG---ATGTTATGTAATTTGTTATATGAATTAACAGAACAAAACAGA-----------TCCAAAATCAAACaggcaggcatgacacctaggctagcctcaaatgtacttaagtagccaaggatgaccttgaaatccgtatc---ctccttcctgcctctgtcccctacgtcctgggatcacaggcatgtgtcaccaggcTTCCCTAACATGCGCCTTACGAAAAGTATTGCTTTATTTCTCAACTTATTTCTGACTAGAAATGTGTCTGGGGAAGGCAAAGCTAGTTCTGTCCTTAACACTCGCATGGCTTCCTTCCCTCCAAGCTGACAGTGCTAAGAAAC---AAGTCTCTCAACTTCTCCATTGCTTAGCTTCCCACT-CTCCATATA----------AGGAGTGAGGAAAGCAAAGCCGAAAAACATGGAC---GCCTGTGGAACTCAGAGGACAGACTGCCCACTGGTCTGCACTTCTGTTCCTAGCACAAT-GACCATTTCCTCTGTCCGTAGCTGAAAG---GTAGATACATTTTGGTGATAGTCAAAGGATGTTCCACAGTAACAAATACTAGCTGATAGGTTTTTAGCATCTATTGGTTGCTAGG---TTTTGATTGGGTTAACGTAGAAACAATTGTGTAATAATCTCACAATAGAAATGTTTGTAGTTACATTTTGAACTG-----TTTGCAGCCTCCACCATATGAAGTCACaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATTCACTGGGTTTCTGATACTGGGACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTA-CATCATTGTAACAGATGAGAGATTGGTGTGTGTTGTCACACATGCA-TGGCCTT--------ATATGCATAGTCTG--TGGCTGTGCTTACAGTTTCACATTAGAATGGACTGTATCTCCATCAGTTTCTGCTCAAATAATACATTATTGAA-TCGTGT---------------ATCCCTG-----------------GCTCACATTGGTATGTATATATTGGCACTCATATA------ACATGATAACCCATAC---TGATAATTGTAAATATAGTTTAACACTTTATCTCTCTCTGCCCTAAGCAGAGGTCATAAAGTCTCTTTTTT-ACTATTTCTCTTACAATTGATTTT-------ATTGCAGTTCCCTTCCTGTGTTATCTTCTTTTTAAGTAAGTGAGGCCCTTCCTGTGGCAAATGTATCT---------TCATGAAAGATTTATCACCATTCCTCATAGACAACCGAATTAACTTATTTTGCTTTATAATCAACAActtctgtttctttctcttctcttctcttctcttc
s HiC_scaffold_1 131147638 3156 + 233722169 ATTACAATATATAGTTGGAGACTTTCAATGACTATAGTACCATTAATTAATACTAATAGCTTCAACACTGAATT-----TGTTTCCccaaatattatttatttgttcttttacccTTGTATTTTGACTATTCAG-------TGTTAACCTTCT----GAAAATGGAGTATTATTATTTCAGGAAACTTTTGCATTAGAAAATAATATACAACCAGGTATGACtatgaaaaataatctttattcaTCACTATGAtaaatattagtaaataaaattattaaagattaGTATGGGCAGTATTTCACAAATCTATGGATATTTTcatttaatcaaaatattttttctaagcttcttaaaattatttttgtgagttCATAAACAGAAAGGAtgaattaaaaattcagaaatatcctttacttc-tgttgctttgttttttaaaatctgtttctaGGTCTGCTTAGAGATTCCCTTCCTTTTCTAAAAGACAAATAGTGGTACT----ACAGTACTAACAAGTGCAACAGATCCCA---CTGACAACACAATGGCAAAAAGATTAACTTTAGGACCATAATTTCCAGCAGAAGGAGTAGTCTGAATTTCACTAGTAGATGGTGTTGGATCAACTTCTGGGGTCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGATCAATCATGCTTCCACTTATCCTTATGATATACTGTtgaactaagaaaaaaaagttacatgTAGTTTAGTAATTGTAGcacatgtttttgaaattctttccatttattgtcagtaatatttaGTTACGTAAAATGTATGCTCATAACAGAAGTCTCACTCATTTTTCAATAAAAGctgaaatttaactt-----------------------------tttaaaaaattttg---ttttgagacaggtt-----------------------------ctcactgtg--gcacaggctggccttgaactcacagcaatcctgcagcctccgcctcctgagtgctaggattacaggtgtgtgacctATAACCACATCCAACCTAAATTCTGACTGTTAGTCTCTGCCAAATGCTACTGTCTTTGTATGAAGAGTAGGATGAGGGTAAAATGTGTCATGTTTCATTGATTAAAAAGTACCACATTTTATTGTTAATACTTTACTGAGTTGTTAATTAAAAACTATTCTCCCCTAACCAACCCTTATACCCTGTCTTTTACAATAATGCCTTTCACTACATGAGTAAACCACCTGACATTTCATTCTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTCGAGGTCAGTGATTTGATTTGGTGGGAATGCTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCACAAC---CTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCATTAAAAATCTCTTGTTTAAA----ATGTGCCTTTG---TTTTTAGGACTTAATGAA------------------TTACCTTCAATGtgtcatttatcttttctttttcatagttaCATTTTTACAAAGTCTTGTGACACAGTCTTAAGTAGCCAAT--AGGGAAAATTCTTTCTTTAGTATTATAACAAATCTCTTGTAGTTGAACTCCAC---ATAACTAATTGCTTTGAAATGAAGATTGCAC----TGagatttattttgtataattcaatatatgtctttgaagaaaaaaatctaatgtgTTTCCCTTCAAATTC----------------TCTCCAAGCTAGC----AATgtatctgga-----------------gaaatttttacCAGTTCCCTTCCAACCACT-------------TGGG---TCAGGCC------------CTTCCCTCCCAGCTGC------AAAAGTATTAC--------------AACTGCCAACAAGAAA----CCTGAAGAAGACACAA--------------AACA----CAAGG-------CCAAACAAAGGAAAGGTGTCAAAGAATGCAGAGTTTA-------------TGCATAGCATCGCAGTGCTCTATGCACTTCTTCTTTAGACTTAATAAAGACATTGTAAATAAATACTGTTATAGCATGTGTATTCTTAAAGATAAATTCTGCTATGGCATGTACTTAAGCCCATGATATACtagattttttcctgtttcttgggCTGAAAATGCAtggttttattgttgacattatc-AAGGGTGTTCCAAAGTGAC-AGTATTAGCTGAATGTTCCTTA----------GGTGCCAGACATTTTTCACAAGTTGACTTTGGAGGCAATTAACAGAGATCTTCTTTCCAGAAATAGGAAAGGTTAAACTCTGAGTTGTAAAATGTGTGGTGCCTACCC-------TCAGGCAAATCAAATCACAAATATTATTTAAGCTATTGCTGAACTTCAGATACCATAAGGTACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCCGTG------GTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAATTATTATGAATTCAAGA----AAGAATTCATACATTTTGTAAGATAAGCACTGGTCTTGGTAAACAATATTCCAAATTTATCTTGCTATTTTGAGAAGGGCATCCTAGAA-------TATTTCCATTATTCTCTGCCTAATGGAAATATTGTTCAATTCATGTCCATGAGTTATTTTGATACCTGAGTATCTATACTTCTAAACACACTTTTGCAAATGcatgtttgtatatgtataataAGTACATACAAATgcatacatataataaataaatacataatgcaCCTTTCTTTCCCACATCAATGTGTATACAAGTAGTAGTATTCCTTTTTTAACCATTGCTctgaaattgaattttttatctaatcacattaatttttctat----tcataTGTTTAAATCTCATAGGTTCTCACTAAGAAAATACTATCCCTAATACTATCCTTTAAGTTTTAATATC----------GAAAGCTAAA-------ACTTTGTCTTATCTTCAACAac-tctttttcttgttctttttagcGCTTGCCCTC

a score=59341
s chr3           144861427 3216 + 160039680 ATGATAACGTTGAGTTGTAGGTTTTGAGTTACTATTATGCCATTAACTTATACTGATAATACCAAGACCACGTTCCTTTTTTTCCTGTAAATGTTGTTGATCTTCTCTTTTATA-TTGTATCTTGGCTAATTAAATAGAGACTTTGAATTTCTTCAGGCAATTTGA--AGTATCATTTCATAAAACTTTTGCATCAGAAAAAAATATACAACTAGAGATCAATAT--AAAAGCAGTTTTAATTATCACTGTAA---------GTGAATAAAATTAT-AAACATTAATATTGGTAGTTTTTCACAGA---ATGGGTGT--------GATTAAAGTATCTTTTAGACCCTCTTGAAATTATTTTTG--AATTCATGA---TATAGGATATGCTTTAAAAACTCAGAAATATCTTTTGATTCATGTTACTTT-----TCAAAATTTTGTTATAG--CTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACCTACAATAATACAAACTAGAACAACAGCACCCAAAACAGATAGCACAATAGTAGAAACACTAACTC------------------CTGATGAACTTG---GACTTTCATCAG-----GGT-CAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGAG-AAAAATGTTATGTGTTGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTCA-CAATATTAAGTCA---------------TATATCAACAGTCTTATTCATTTTTCTGTAAAAGCTGAGTTCTGACTttcatttattaattcatcttatcttatttatttatttatttttggtttttcgagacaggatttctctctacagtcctggctgtctggaaactcactgtgtagaccaggctggccttgaact--cagaaatctgcctgcttctgcctcccaagtgctgggattaaaggtatgtgcc------accattgcccgactGTGTTCTGACTTTTAAAGACAGCCA--------------TGCAGGAAAATCAAGA----------------CCTGTTTCATAAA--------------ATCCTAAAATTCCCACTTGGCTGAGTTGTCAGTTAAG---TGCTCTCCTCTAGCTGACATATCTGCTCTTGCTTCACCCTGGACATCTCTCGCT-CATGTCAAACCCAGAGTGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGGACCACTTGGAACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAGGACTGGCTT--GAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGCATTTAAAATTCTCTAGTTAAATTGGATGGAACTCTAGACTTTTTAGAACTCAGTCAGACAGCTTCCTGACCCTCCTTGTCTTTTCTTTCTTCTTTCTCTTTTCATTCCCAAGCTTTCATTTTTATGA-----TGTGTCACAATCAAAGCCTTCCATTTGTGGGAAAAGGCATCCTCCAGAATTATTACCAGGA---TGTAATCAAATCAAATTGGACAATAACTTGCGGTGATATGAAAACTGCCCCGAATGAGG---ATGTTATGTAATTTGTTATATGAATTAACAGAACAAAACAGA-----------TCCAAAATCAAACaggcaggcatgacacctaggctagcctcaaatgtacttaagtagccaaggatgaccttgaaatccgtatcctccttcctgcctctgtcccctacgtcctgggatcacaggcatgtgtcaccaggcTTCCCTAACATGCGCCTTACGAAAAGTATTGCTTTATTTCTCAACTTATTTCTGACTAGAAATGTGTCTGGGGAAGGCAAAGCTAGTTCTGTCCTTAACACTCGCATGGCTTCCTTCCCTCCAAGCTGACAGTGCTAAGAAAC---AAGTCTCTCAACTTCTCCATTGCTTAGCTTCCCACT-CTCCATATA----------AGGAGTGAGGAAAGCAAAGCCGAAAAACATGGAC---GCCTGTGGAACTCAGAGGACAGACTGCCCACTGGTCTGCACTTCTGTTCCTAGCACAAT-GACCATTTCCTCTGTCCGTAGCTGAAAG---GTAGATACATTTTGGTGATAGTCAAAGGATGTTCCACAGTAACAAATACTAGCTGATAGGTTTTTAGCATCTATTGGTTGCTAGG---TTTTGATTGGGTTAACGTAGAAACAATTGTGTAATAATCTCACAATAGAAATGTTTGTAGTTACATTTTGAACTG-----TTTGCAGCCTCCACCATATGAAGTCACaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATTCACTGGGTTTCTGATACTGGGACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTA-CATCATTGTAACAGATGAGAGATTGGTGTGTGTTGTCACACATGCA-TGGCCTT--------ATATGCATAGTCTG--TGGCTGTGCTTACAGTTTCACATTAGAATGGACTGTATCTCCATCAGTTTCTGCTCAAATAATACATTATTGAA-TCGTGT---------------ATCCCTG-----------------GCTCACATTGGTATGTATATATTGGCACTCATATA------ACATGATAACCCATAC---TGATAATTGTAAATATAGTTTAACACTTTATCTCTCTCTGCCCTAAGCAGAGGTCATAAAGTCTCTTTTTT-ACTATTTCTCTTACAATTGATTTT-------ATTGCAGTTCCCTTCCTGTGTTATCTTCTTTTTAAGTAAGTGAGGCCCTTCCTGTGGCAAATGTATCT---------TCATGAAAGATTTATCACCATTCCTCATAGACAACCGAATTAACTTATTTTGCTTTATAATCAACAActtctgtttctttctcttctcttctcttctcttctcttctcttctcttc
s HiC_scaffold_1 131072420 3164 + 233722169 ATTACAATATATAGTTGGAGACTTTCAATGACTATAGTACCATTAATTAATACTAATAGCTTCAACACTGAATT-----TGTTTCCccaaatattatttatttgttcttttacccTTGTATTTTGACTATTCAG-------TGTTAACCTTCT----GAAAATGGAGTATTATTATTTCAGGAAACTTTTGCATTAGAAAATAATATACAACCAGGTATGACtatgaaaaataatctttattcaTCACTATGAtaaatattagtaaataaaattattaaagattaGTATGGGCAGTATTTCACAAATCTATGGATATTTTCATTTAATCAAAATTTTTCTAag--cttcttaaaattatttttgtgagttCATAAACAGAAaggatg-aatttaaaaattcagaaatatcctttacttc-tgttgctttgttttttaaaatctgtttctaGATCTGCTTAGagattcctttccttttctaaaagACAAATAGTGGTACT----ACAGTACTAACAAGTGCAACAGATCCCA---CTGACAACACAATGGCAAAAAGATTAACTTTAGGACCATAATTTCCAGCAGAAGGAGTAGTCTGAATTTCACTAGTAGATGGTGTTGGATCAACTTCTGGGGTCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGCTCAATCATGCTTCCACTTATCCTTATGATATACTGTTGAACTAAGAAAAAAAGTTACATGTAGTTTAGTAATTGTAGcacatgtttttgaaattctttccatttattgtcagtaatatttaGTTACGTAAAATGTATGCTCATAACAGAAGTCTCACTCATTTTTCAATAAAAGctgaaatttaactt-----------------------------tttaaaaaattttg---ttttgagacaggtt-----------------------------ctcactgtg--gcacaggctggccttgaactcacagcaatcctgctgcctcagcctcctgagtgctaggattacaggtgtgtgacctATAAACCACATCCAACCTAAATTCTGACTGTTAGTCTCTGCCAAATGCTACTGTCTTTGTATGAAGAGTAGGATAAGGGTAAAATGTGTCATGTTTCATTGATTAAAAAGTACCACATTTTATTGTTAATACTTTACTGAGTTGTTAATTAAAAACTATTCTCCCCTAACCAACCCTTATACCCTGTCTTTTACAATAATGCCTTTCACTACATGAGTAAACCACCTGACATTTCATTCTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTTGAGGTCAGTGATTTGACTTGGTGGGAATGCTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCACAAC---CTTCAGATTATTATCATCAATTTCTGGTCTTGGTGTGTTCCCTTTAATTTCTCCTGCATTAAAAATCTCTTGTTTAAAATGTG------CCTGTGTTTTTTAGGACTTAATGAATTACCTTCAATGcgtcatttatcttttcttttt------------------catagttaCATTTTTACAAAGTCTTGTGACACAGTCTTAAGTAGCCAAT--AGGGAAAATTCTTTCTTTAGTATTATAACAAATCTCTTGTAGTTGAACTCCAC---ATAACTAATTGCTTTGAAATGAAGATTGCAC----TGagatttattttgtataattcaatatatgtctttgaagaaaaaaatctaatgtgTTTCCCTTCAAATTC----------------TCTCCAAGCTAGC----AATGTATCT-----------GGAGAAATTGTTACCAGTTCCCTTCTAACCACTTGGGT-------------------CAGGCC------------CTTCCCTCCCAGCTGC------AAAAGTATTAC--------------AACTGCCAACAAGAAA----CCTGGAGAAGACACAA--------------AACA----CAAGG-------CCAAACAAAGGAAAGGTGTCAAAGAATGCAGAGTTTA-------------TGCATAGCATCGCAGTGCTCTATGCACTTCTTCTTTAGACTTAATAAAGACATTGTAAATAAATACTGTTATAGCATGTGTATTCTTAAAGATAAATTCTGCTATGGCATGTACTTAAGCCCATGATATACtagattttttcctgtttcttgggCTGAAAATGCAtggttttattgttgacattatc-AAGGGTGTTCCAAAGTAAC-AGTACTAGCTGAATGTTCCTTA----------GGTGCCAGACATTTTTCACAAGTTGACTTTGGAGGCAATTAACTGAGATCTTCTTTCCAGAAATAGGAAAGGTTAAACTCTGAGTTGTAAAATGTGTGGTGCCTACCC-------TCAGGCAAATCAAATCACAAATATTATTTAAGCTATTGCTGAACTTCAGATACCATAAGGTACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCCGTG------GTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAAGTAAATCAATTATTATGAATTCAAGA----AAAAACTCATACATTTTGTAAGATAAGCACTGGTCTTGGTAAACAATATTCCAAATTTATCTTGCTATTTTGAGAAGGGCATCCTAGAA-------TATTTCCATTATTCTCTGCCTAATGGAAATATTGTTCAATTCATGTCCATGAGTTATTTTGATACCTGAGTATCTATACTTCTAAACACACTTTTGCAAATGcatgtttgtatatgtataataAGTACATACAAATgcatacatataataaataaatacataatgcaCCTTTCTTTCCCACATCAATGTGTATACAAGTAGTAGTATTCCTTTTTTAACCATTGCTctgaaattgaattttttatctaatcacattaatttttctat----tcataTGTTTAAATCTCATAGGTTCTCACTAAGAAAATACTATCCCTAATACTATCCTTTAAGTTTTAATATC----------GAAAGCTAAA-------ACTTTGTCTTATCTTCAACaac-------tctttttcttgtttttttttttttttttagctcttgcCCTC

a score=6977
s chr3           144861992 257 + 160039680 GAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGAGAAA
s HiC_scaffold_1 130977632 257 + 233722169 GAGGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATTCTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAA

a score=10044
s chr3           144861992 259 + 160039680 GAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACT---GAGAAAAA
s HiC_scaffold_1 131287921 262 + 233722169 GAGGAATAAACAAAGACACTTGGGCCAAGTTGGATATTTCTGATTCCAGATTAGCCTTATCGACAGCCTTAATAGCAATGAAAAGATTGGTGCCATTTTCAAAGGCAATGTTTTCTGGTTCAAACACAAAGATTTCCTCAGAGTTGGCCTTCTTTGGGATGAGACCAGTTGTGTTCACTTGAACTGAAGCATTGAACTTGTCTCTGAGGTCAAGGACATTTGTACTCATTCGAATGATATACTTGAAAgctaaagaggaaaa

a score=14089
s chr3           144862607 385 + 160039680 ATAAAATCCTAAAATTCCCACTTGGCTGAGTTGTCAGTT---AAGTGCTCTCCTCTAGCTGACATATCTGCTCTTGC---TTCACCCT------GGACATCTCTCGCTCATGTCAAACCCAGAGTGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGGACCACTTGGAACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAGGACTGGCTTGAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGCATTTAAAATTCTCTAGTT
s HiC_scaffold_1 131016995 382 + 233722169 ATCAGATTATGAAATTAATACCTTGCTGCACTGTcaatttaaaagtgttttcctTT--------CATCTATCCTTACACCTTTACTTTTGCAAGGAATACTTTTCGCTTAT---AACCATAAAACACTTC--ACTCTTACCTTTCCCAATATCAAAATCATCTCCTGGTGCTGTCCATGTTAGGTGGATTTCATCCCCATGAAGTGTGGCATCAAGGTCTCTGATTTGGCTAGGTGGATACAGGTCaatgaaggggagaggtggaACTTGTGATACCACAAACACACCTCCAGATACTGTTCTGGTGAAACTCTCCGAGATTGGC-TGAGTGTCTTGATTATTTTCAGGTTTCAGTGCATTCTCTTCAATTTTCCCTGCATTGAAAATTC-CTGGTT

a score=5428
s chr3           144862730 244 + 160039680 CTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCAAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACAGATCAGGCAATGG--ACCACTTGGA---ACATTGGACACTACAAAGGCACCTCCAGACGCTGTCCTGCTGAAATTCTCCAG---GACTGGCTTGAGTAGCCCGAGTTGTTTTGGGTCTGGGTGGGTTCCTTTGAATTTCTCCTGC
s HiC_scaffold_1 130981283 249 + 233722169 CTTACCTTTTCCTTTATCAAGGACATTGCCAGAGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAATTTAGCCTGAAGGTCTGTAATTTTACTGGGTGGGAACACAGGAGT--ATGGTTACCCTTAGGAGGCGCTCCTGACACAATGAATGACTCTCCCAAGCTTAGTCTGCTGAAGTCCTCCAGTtcaact-ttttctgcatcttctttgatttcaggtCTGGGCGGGTTCATTATAATTTTGCCTAC

a score=14306
s chr3           144863680 943 + 160039680 ATGACCATTTCCTCTGTCCGTAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCACAGTAACA-AATACTAGCTGATAGGTTTTTAGCATCTATTGGTTGCTAGGTTTTGATT---GGGTTAACGTAGAAACAATTGTGTAATAATCTCACAATAGAAATGTTTGTAGTTACATTTTGAACTGTTTGCAGCCTCCACCATATGAAGTCACaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATTCACT-----------GGGTTTCTGATACTGGGACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCT--TGGTAAAAACATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGATTGGTGTGTGTTGTCACACATGCA-TGGCCTTAT---ATGCAT-----AGTCTGT-GGCTGTGCTTACAGTTTCACATTAGAATGGACTGTATCTCCATCAGTTTCTGCTCAAATAATACATTATTGAATCGTGTATCCCTGGCTCACATTGGTATGTATATATTGGCACTCATATAACATGATAACCCATAC--------------TGATAATTGTAA------ATATAGTTTAACACTTTATCTCTCTCTGCCCTAAGCAGAGGTCATAAAGTCTCTTTTTTACTATTTCTCTTACAA----TTGATTTTATTGCAGTTCCCTTCCTGTGTTATCT------TCTTTTTAAGTAAGTGAGGCCCTTCCTGTGGCAAATGTATCTTCATGAAAGATTTATCACCATTCCTCATAGACAACCGAATTAACTTATTTTGCTTTATAATCAACAActtctgtttctttctcttctcttctcttc
s HiC_scaffold_1 131109062 913 + 233722169 ATAACAAATTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCGTCCAGGTATTCCAAAGTAACAGAACACAA------ATGGCCTGAGTACTCACTAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAG--GAAGTTGTGAAATGAA------GCCCCCTTTGTCATACCAAATTACAAATA--------------------------TTACTCCAGCCAGCACAGGTTTCAGGTAGCATGTGGCACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTCTCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCTAgttgtagaaataaaaaaaaacaaatt--attactgaaaataagacaataaatagATGCGTTTTCTGAGACAGGCATTGGTCTTAGTAAGTGTATCATCCAGTCTGGAGGAAGTATTTTGGGAACAACATT---CTGGAGACTATTTCTGTAATGTTCTGATAAAACAATATATTGATG---------CCCTTAagttatttttgtatctatatacTTCTACCTATataacacatatacacacacttttGTTTCTGCATTGATAATAGTTACATATCACATCTTTCTATCCTTTATCAATCTGTCCTTTCAGTTG----------GTAACCCCTCTACCATTTCTCGGCCAGTGGTTTGCTTACATTACAAAATTAATC--ATGCTGTCTAAAAGGTCTTTACTACAAA--AAACCCCATCCTTTGGAGGATTTACTTTTTTGGG--------------TCCTCAAGTAAAAGT------ACTTGTTTTCTCTTAT--TCAGCAATTCCTTTTTACTTTCCTGCTCTTATTATC

a score=15784
s chr3           144863680 943 + 160039680 ATGACCATTTCCTCTGTCCGTAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCACAGTAACA-AATACTAGCTGATAGGTTTTTAGCATCTATTGGTTGCTAGGTTTTGATT---------GGGTTAACGTAGAAACAATTGTGTAATAATC-----TCACAATAGAAATGTTTGTAGTTACATTTTGAACTGTTTGCAGCCTCCACCATATGAAGTCACaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATTCACT-----------GGGTTTCTGATACTGGGACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGATTGGTGTGTGTTGTCACACATGCA-TGGCCTTAT---ATGCAT-----AGTCTGT-GGCTGTGCTTACAGTTTCACATTAGAATGGACTGTATCTCCATCAGTTTCTGCTCAAATAATACATTATTGAATCGTGTATCCCTGGCTCACATTGGTATGTATATATTGGCACTCATATAACATGATAACCCATACTGATAATTGTAAAT-----ATAGTTTAACA---------------CTTTATCTCTCTCTGCCCTAAGCAGAGGTCATAAAGTCTCTTTTTTACTATTTCTCTTACAA----TTGATTTTATTGCAGTTCCCTTCCTGTGTTATCT------TCTTTTTAAGTAAGTGAGGCCCTTCCTGTGGCAAATGTATCTTCATGAAAGATTTATCACCATTCCTCATAGACAACCGAATTAACTTATTTTGCTTTATAATCAACAActtctgtttctttctcttctcttctcttc
s HiC_scaffold_1 131185735 930 + 233722169 ATAACAAATTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCATACAGGTGTTCCAAAGTAACAGAACACAAGTGGCCAA--TCTGAGTACTCA-------CAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAGGACATCTGTA-TTGAGTTGTGAAAGGAA-GCCCCCTCTGTCATACCAAATTGCAAATG--------------------------TTACTCCAGCCAGCACAGGTTTCAAGTAGCAAGCGGCACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaacaaatt--attactgaaaataagacaataaacaGATGCATTTTCTGAGACAGGCATTGGTCTTAGTAAGTGTATCATCCAGTCTGGAGGAAGTATTTTGGGAACAACATT---CTGGAGACTATTTCTGTAATGTTCTGTTAAAACAATATATTGATG---------CCCTTAagttatttttgtatctatatacTTCTACCTATataacacatatacacacacttttGTTTCTGCATTTATAATAGTTACATATCacatctttctgtcctttatcaaTCTGTCCTTTATCAACAGTTGATAA-----CTCCTCTACCATTTCTCAGCCAGTGGTTTGCTTACATTACAAAATTAATC--ATGCTGTCTAAAAGGTCTTTACTACAAA--AAACCCCATCCTTTGGAGGATTTACCTTTTTGAG--------------TCCTCAAGTAAAAGT------ACTTGTTTTCTCTTAT--TCAGCAATTCCTTTTTACTTTCCTGCTCTTATTATC

a score=10926
s chr3           144863840 366 + 160039680 TAGAAATGTTTGTAGTTACATTT-TGAACTGTTTGCAGCCTCCACCATATGAAGTCACaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATTCACTGGGTTTCTGATACTGGGACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTA-CATCATTGTAACAGATGAGAGATTGGTGTGTGTTGTCACACATGCAT
s HiC_scaffold_1 131025022 354 + 233722169 TAGGgataattttagttttagtaATAAACCTTTTAAAGCATTAATCATATCAGCTCACAAATATTATTCAAGACAACA------------CTCTGAATTTCTGACGTCATGAATTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaaggaagaaattattatca--aaaagaaaagatgaatttatgcattttataaaCCAAGCAT

a score=6153
s chr3           144863949 208 + 160039680 GACCCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGA--TGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAAT
s HiC_scaffold_1 131292088 208 + 233722169 GAATTACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTT--CCCTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCTGGccagggaaatgaaggaaataat

a score=6614
s chr3           144863952 186 + 160039680 CCACTCACCATCCACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCGGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTA
s HiC_scaffold_1 130982022 183 + 233722169 CTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGT---TGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACA

a score=43958
s chr3           144865487 2329 + 160039680 GTTCTTATATTAGCCACATTTGTGTCCCTCTGAAAGTCTGGGAATTTTCAGACATGCAGATTTCCCAGGCTACCTAGGGAAACACCTGAGCAGT--------------CCTTCAAGTGACTCTTCTGTACACAAAAGCAT--GCAGTGCTGGCCTCAGCTATCGTCCGTCTATTTCTTTTTCTTTTTTTCCAGTGAATTAATTTTAAATTAGTTTGTTCTGCCATGAACTAAATGCTCATCTGGTAATCTAGTAAAATACCAAGAAATGAAGCAAAAAGCATGAAGGCACATGCACTGTAGAAGGGACTGGAAATTGGGGAGAGGTAGTTGGGGAATTATTGTTGTAATGAGAGAAAACGTGGAATTTCCTCCAAAAACA----GTCAAATATAGCTGAATACAAGTTTGTAGAATGACATAAAATGCACTG----GCGGGCATATT---TTCTT-----GTTCATTTGTCGATCAGATTGGTTATTTT---ATTCACTGACTTCCA------GACAAGGTTCCACTCACAGGAGAATACAGAGTGCAGGGAAAGGGTTTCT--GCTCCACC--TCCCTACAGAGTAA---------------CCATTGCAGTTCCGAGCTCCTGCCAGGGAGACCCAGCATCTGACCCTGCAGTGCTCAGTCCCCCTCTCT-GTGCTATTTCTAGCTTCTCCTAGGTCCCTGCTCCCAGGACTCTATCTATGCTTTGTTCCAGCTGTGGGGAATCACCCTTGCTTCCTTCCCTTCAGCTATCAGGGTCCCAGGTTCTGTT-----GCCCTCTCCCACCCAAGAGACAATTCCTGCATCAGCGGCTTTGATAGCACTTTTTTGTTGATGTT-CCCCTAAGAAGCATGAACTTAGAAGGAAGGCTTGTGTTCTCCATCTTCTGAATGGGCCTGTCTTAG---------CTGGAGATGGCCAGTGCCTATCAAGATTACAGACATCATTTTGGCAGTAGCTGACATATACAGACAGCTTACCATGTGGAAGATGCTTGCTATGCACTT---AGGTGGTACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTG----TTCCCACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATTCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATG-AAACATGA-AGCAATCATTTAGAGTCCAAAGACATGTCTTTTCCCCATTATGTGATTTTCAAAATAAAGCATAGAACTAACAACAACAACAACATAACAAATTGG--GATAAGT--GGAATTAGAAAGGTCTTGATTCCTCAAATACTGAA---------------ACAGACACAGACCATGATATTTGACTTTTGTGAAGTATCAATCGGAAAATAATGTTTTGATAAGTTTGCCTTTGCTTTGCCCTCATTCTCTGGCCTCAGTGTCATATATTCCATGACTCTGGCAGGCAGAATGGGAAAAGATGT-CATGTCAGGTCACCAGGACTCTCCACGTTTCTTCCTCCCTGTTCTCAGATGCCTTTTGTTTTCTATCAACCCAAGGCTTCTTTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATACATTGTTCTTTCATTTTGAAGATGGTAAAGTTATT-GTACTCACATTTATGATGTGCTTAGAGCCTCTTTGCA-----AAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTG---TTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAATCAAAAAGAAGaaaagcaaaaacaaaacaaaaaacaaaaacaaaaaAACCTTAATGACTACATAAGACAAAAGTTTTATTATCTTCTCCTTTCTAGATAATTCCTCATATTTGATCTGAAAACAGTTTATATATGCTGAACTACATTAG
s HiC_scaffold_1 131150963 2224 + 233722169 GCCTTTAGATCAGAAATAGCTGTGTCTCTC--AAAATCTAGAAATTTTCAAACATGCTAATT--AGAGAGTATCCAGAAAAGGGTCTCAGTTTTACGTTTTACCAACGCCTTCAGAGGTTTCCTTTGCAGACTAAAGTGTAAGTATACCTGCCTTCCTATGTCAT--GATTAATTATTGATATCTTCTT--AGGTAAAGGCATCCAAGTAAGATACCTTCCTAATTAGCCAAATATTCAGATGGCAG--------AGGGCAAAGAAAGGAAAGCACTTGCAGGTAAGTTTTAGTGTTGTACAGCTGA--GGAA-----GAAGAGACAA--GGGGTATTG--------GTGGGAGAGAGCACTGAGGTGCATCAAAGAATAATTTGCCAGCACTAGTTGAAGACACAATTATAGAATGA-ATAAATTACACTGCAAAAGGTTCATATGGAATTCTGCAATAATTCAGATATGTTTCAAATTGTTCATCTTCTTGTTCTGTGACCTTTAATAGAAGATGAAGTTCC-----CAGAAAA-------GCTCTGGGAAAATGTCTTTAAGCACCACTCatccatacagaacagaaagacagGGCTTGGTCAGCACTATTCCATGTTCCTGACAGTCAGACCTGGTATCAGATGCC-CATCGATGTGCCCTCCTTTCTTGTGGTGGTTTTCGCTCCTCCTGGACCTCAGCGCTCAGGACTGCatctgtattttgtcccaggtCTTGGGAATTACTCCTGCtgctctccctttccctcccagggGCCTGGGTTCGACTACTTAGCTCTCTCTTGCC---------GCTTGTGCTTCACTCTCTCTGCCCAGGCTCTCTTGAGAATGCAACCTCCAAGAGGCACTAACT-----AGAAAGCCTGA---CTCTCTCTTT---ATGAGAATCTTTCAGTGAGATCTACTGGTGACGGACATTGGCTGTCCAGATGAC---CATACCTTTGATAATAAATAACATTTCCTGAGTACTTAGCATGTAAAACATACTTGCTAGGCATTTTATCAGTTTTACCTGATAGAATTTTCTGCTGGTGCTCTTATTGCTCTACAGTCTACCTCAATTCATTGGGTGCCTGTCTTCCTGCTTCACGCTACATCTAGGACTCATAACACATCCTTAGTTATAAA-ATGTAAACTCCTTCATAAAAGCCTGTGAATTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCGCATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTCGCACTCACTGTGATTGGAGGCACAGCAGCTTTTGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGAGATTGCTTTGGCTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAATGTTCAATGAAAACATAATAAGTATCATC---------AAGATATTTTCGGTTTTGACTATA-GagttctaaaataaataatataaatatgggCTAC-----CATAAACAGGTGGTTGATGATTTGGAGATTTTAAAAGACTTAAGTTGTGGAAGTTTGGCTAGTCCACCCCGTTTAGAGTCATA---CATGGTATATATACTATGTGAAGTATCAACTGGGAAA----------ATAAGTTTGCCTTGGTTGTAGCGTTTTTTGCTCACCTCAGT------------------------------------AACAATGTGCATATCGAGCTGCCCATACCCTTCCCATATTTCCTTAAATCTTCC-------------TTTTTCGCAATACTtagtttgtttttcctgttttttgtcaTTACAACTTTCAGG---ACACAAGGAAAGAACGTAGA---------ATTTAATTTCACAGGTGCTGTGATCACTAACATTCAGAGTTATGAAAT-TTAACAGTTTATTTTCAGCATTAAAAAA---TTCAGAGGAAGTGTAAA----AGCTGATTGCTTACCTGTGCATGTCCGGGAATAGTGAGATATGCCATTTTGGAGTCATTGTCCTGTTTGAAACCTTCTATCAGTGATCCATTGGGAGCCACAAGAGAAATAGCAGGAGTCTGCTCTTTGGACCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTACCACAGTGTCATTCATCCAGGCGCCAGTGTCCAATGTTAGTCCCTTACTTTCAAgctgtttaaat---------atattttaaaag------------------------------------------ttaacgactatagaaaataataatttaagtaaTGTTTCTTAAAAAGATGATTCTTACTTTCTGGTCTGAAAACAATGTATACATGGCATACCACCTTAG

a score=45654
s chr3           144865487 2329 + 160039680 GTTCTTATATTAGCCACATTTGTGTCCCTCTGAAAGTCTGG-GAATTTTCAGACATGCAGATTTCCCAGGCTACCTAGGGAAACACCTGAGCAGT--------------CCTTCAAGTGACTCTTCTGTACACAAAAGCAT--GCAGTGCTGGCCTCAGCTATCGTCCGTCTATTTCTTTTTCTTTTTTTCCAGTGAATTAATTTTAAATTAGTTTGTTCTGCCATGAACTAAATGCTCATCTGGTAATCTAGTAAAATACCAAGAAATGAAGCAAAAAGCATGAAGGCACATGCACTGTAGAAGGGACTGGAAATTGGGGAGAGGTAGTTGGGGAATTATTGTTGTAATGAGAGAAAACGTGGAATTTCCTCCAAAAACA----GTCAAATATAGCTGAATACAAGTTTGTAGAATGACATAAAATGCACTG----GCGGGCATATT---TTCTT-----GTTCATTTGTCGATCAGATTGGTTATTTT---ATTCACTGACTTCCA------GACAAGGTTCCACTCACAGGAGAATACAGAGTGCAGGGAAAGGGTTTCT--GCTCCACC--TCCCTACAGAGTAA---------------CCATTGCAGTTCCGAGCTCCTGCCAGGGAGACCCAGCATCTGACCCTGCAGTGCTCA-------GTCCCCCTCTCT-GTGCTATTTCTAGCTTCTCCTAGGTCCCTGCTCCCAGGACTCTATCTATGCTTTGTTCCAGCTGTGGGGAATCACCCTTGCTTCCTTCCCTTCAGCTATCAGGGTCCCAGGTTCTGTT-----GCCCTCTCCCACCCAAGAGACAATTCCTGCATCAGCGGCTTTGATAGCACTTTTTTGTTGATGTT-CCCCTAAGAAGCATGAACTTAGAAGGAAGGCTTGTGTTCTCCATCTTCTGAATGGGCCTGTCTTAG---------CTGGAGATGGCCAGTGCCTATCAAGATTACAGACATCATTTTGGCAGTAGCTGACATATACAGACAGCTTACCATGTGGAAGATGCTTGCTATGCACTT---AGGTGGTACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTG----TTCCCACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATTCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATGAAACATGAAGCAATCATTTAGAGTCCAAAGACATGTCTTTTCCCCATTATGTGATTTTCAAAATAAAGCATAGAACTAACAACAACAACAACATAACAAATTG-GGATAAGTGGAA----TTAGAAAGGTCTTGATTCCTCAAATACTGAAA------------CAGACACAGACCATGATATTTGACTTTTGTGAAGTATCAATCGGAAAATAATGTTTTGATAAGTTTGCCTTTGCTTTGCCCTCATTCTCTGGCCTCAGTGTCATATATTCCATGACTCTGGCAGGCAGAATGGGAAAAGATGT-CATGTCAGGTCACCAGGACTCTCCACGTTTCTTCCTCCCTGTTCTCAGATGCCTTTTGTTTTCTATCAACCCAAGGCTTCTTTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATACATTGTTCTTTCATTTTGAAGATGGTAAAGTTATT-GTACTCACATTTATGATGTG----CTTAGAGCCTCTTTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTT---GTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAATCAAAAAGAAGaaaagcaaaaacaaaacaaaaaacaaaaacaaaaaAACCTTAATGACTACATAAGACAAAAGTTTTATTATCTTCTCCTTTCTAGATAATTCCTCATATTTGATCTGAAAACAGTTTATATATGCTGAACTACATTAG
s HiC_scaffold_1 131075753 2240 + 233722169 GCCTTTACATCAGAAATAGCTGCGTC--TCTTAAAATCTAGAGATTTTTTAAACATGCTAATTAGTGAGAGTATCcagaaatgggtctcagttttatGTTTTACCAACACCTTCAGATGTTTCCTTTGCAGACTAAAGTGTAAGTATACCTGCCTTCCTATGTCAT--GATTAATTATTGATATCTTCTT--AGGTAAAGGCATCCAAGTAAGATACCTTCTTAATTAGCCAAATATTCAGATGGCAG--------AGGGCAAAGAAAGGAAAGCACTTGCAGGTAAGTTTTAGTGTTGTACAGCTGA--GGAA-----GAAGAGACAA--GGGGTATTG--------GTGGGAGAGAGCACTGAGGTGCATCAAAGAATAATTTGCCAGCACTAGTTGAAGACACAATTATAGAATGA-ATAAATTACACTGCAAAAGGTTCATATGGAATTCTGCAATAATTCAGATATGTTTCAAATTGTTCATCTTCTTGTTCTGTGACCTTTAATAGAAGATGAAGTTCC-----CAGAAAA-------GCTCTGGGAAAAGGTCTTTAAGCACCACTCATCCATACAGAACAGGAAGACAGGGCTTGGTCAGCACTATTCCATGTTCCTGACAGTCAGACCATGTTCCTGACAGTCAGATGCCCATCGATGTGCCCTCCTTTCTTGTGGTGGTTTTCGCTCCTCCTGGACCTCAGCGCTCAGGACTGCatctgtattttgtcccaggtCTTGGGAATTACTCCTGCtgctctccctttccctcccagggTCCTGGGTTCGACTACTTAGCTCTCTCTTGCC---------GCTTGTGCTTCACTCTCTCTGCCCAGGCTCTCTTGAGAATGCAACCTCCAAGAGGCACTAACCTAGAAAG----CCTGA---CTCTCTCTTT---ATGAGAATCTTTCAGTGAGATCTACTGGTGACGGACATTGGCTGTCCAGATGAC---CATACCTTTGATAATAAATAACATTTACTGAGTACTTAGCATGTACAACATACTTGCTAGGCATTTTATAAGTTTTACCTGATAGAATTTTCTGCTGGTGCTCTTATTGCTCTACAGTCTACCTCAATTCATTGTGTGCCTGTCTTCCTGCTTCACGCTACATCTAGGACTCATAACACATCCTTAGTTATAAA-ATGTAAACTCATTCATAAAAGCCTGTGAATTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCACATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTAGCACTCACTGTGATTGGAGGCACAGCAGCATTCGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGGGATTGCTTTGGCTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAATGTTCAATGAAA-ACATAGTAAATATCCACAAGCTATTTTCAGGTTT------CATTAtgcaattct-aaaataaataatagacaTATGAACTACAATA----AACAAGTGGTTgatgattttgagattttaaaaagatttaaattgtGGAAGTTTGGCCAGTCCACCCTCTCTAGAGTCATA-CATGGTGTATATACTGTGTGATGTATAAACTGGGAAA----------ATAAATTTGTCTTGGCTGTAGCTTTGTTTGTTGACCTCAGTAGCA------------------------------------ATGTGCATATCAAGCTGCCCATACCCTTCCCATATTTCcttcttaattc----------ttcctttttcatGATAGTtagtttgtttttcctgtttttagtCATTACAACTTTCAGGATCAC------AAGGAAAGAACATAGA-----ATTTAATTTCACAGGTGCTGTGATCTTTAACATTCAGAGTTATGAAGTTAAACATTGTATTTTCAGCACTAAAA----ATTCAGAGGAAGTGTAAA----AGCTGATTGCTTACCTGTGCATGTCCGGGAATAGTGAGATAGGCCATTTTGGAGTCATTGTCCTGTTTGAAACCTTCTATCAGTGATCCATTGGGAGCCACGAGAGAAATAGCAGGAGTCTGTGGTGTGGACCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTACCACAGTGTCATTCATCCAGGCGCCAGTGTCCAATGTTAGTCCCTTACTTTCAAgctgtttaaat---------atattttaaaag------------------------------------------ttaatgacTACAGAAAATAATGATTTAAGTCATGTTTCTTAAAAAGATGATTCTTACTTTCTGGTCTGAAAACAATGTATACATGGCATACCACCTTAG

a score=37278
s chr3           144865671 2152 + 160039680 ATTTTAAATTAGTTTGTTCTGCCATGAACTAAATGCTCATCTGGTAATCTAGTAAAATACCAAGAAATGAAGCAAAAAGCATGAAGGCACATGC-ACTGTAGAAGGGACTGG-AAATTGGGGAGAGGTAGTTGGGGAATTATTGTTGTAATGAGAGAAAACGTGGAATTTCCTCCAAAAACA----GTCAAATATAGCTGAATACAAGTTTGTAGAATGAC---ATAAAATGCACTGGCGGGCATATTTTCTTGTTCATTTGTCGATCAGATTGGTTATTTTATTCACTGACTTCCAGACAAGGTTCCACTCACAGGAGAA---TACA----------GAGTGCAGGGAAAGGGTTTCTGCTCCACCTCCCTACAGAGTAACCATTGCAGTTCCGAGCTCCTGCCAGGGAGACCCAGCATCTGACCCTGCAGTGCTCAGTCCCCCTCTCT-GTGCTATTTCTAGCTTCTCCTAGGTCCCTGCTCCCAGGACTCTATCTATGCTTTGTTCCAGCTGTGGGGAATCACCCTTGCTTCCTTCCCTTCAGCTATCAGGGTCCCAGGTTCTGTTGCCCTCTCCCACCCAAGAGACAATTCCTGCATCAGCGGCTTTGATAGCACTTTTTTGTTGATGTTCCCCTAAGAAGCATGAACTTAGAAGGAAGGCTTGTGTTCTCCATCTTCTGAATGGGCCTGTCTTAGCTGGAGATGGCCAGTGCCTATCAAGATTACAGACATCATTTTGGCAGTAGCTGACATATACAGACAGCTTACCATGTGGAAGATGCTTGCTATGCACTT--AGGTGGTACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTGTTCC----CACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATTCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATGAAACATGAAGCAATCATTTAGAGTCCAAAGACATGTCTTTTCCCCATTATGTGATTTTCAAAATAAAGCATAGAACTAACAACAACAACAACATAACAAATTGGGATAAGTG---GAATTAGAAAGGTCTTGATTCCTCAAATACTGAAACAG--ACACAG---ACCATGATATTTGACTT--TTGTGAAGTATCAATCGGAAAATAATGTTTTGATAAGTTTGCCTTTGCTTTGCCCTCATTCTCTGGCCTCAGTGTCATATATTCCATGACTCTGGCAGGCAGAATGGGAAAAGATGTCATGTCAGGTCACCAGGACTCTCCACGTTTCTTCCTCC----CTGTTCTCAGATGCCTTTTGTTTTCTATCA------ACCCAAGGCTTCTTTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATA-CATTGTTCTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATGTGCTTAGAGCCTCTT----TGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAATCAAAAAGAAGaaaagcaaaaacaaaacaaaaaacaaaaacaaaaaAACCTTAATGACTACATAAGACAAAAGTTTTATTA-TCTTCTCCTTTCTA--GATAATTCCTCATATTTGATCTGAAAAC-AGTTTATATATGCTGAACTACATTAGCTTTCTC
s HiC_scaffold_1 131237685 1805 + 233722169 ATTCCAAATTAGGCAGTTTCACAGCTAATCAAATATTCATCTGAAAA--------Aacgccaaaaaataaaacaa----cacgaAGGTAAGTTTTAATGTGTAATAGTTTTGCAGACAGAAGAGAGA----------------GTTGTCGAAAAAGACAATAAGG---TTCATCCAACAACAATGTGTCAACCATAGTGGAAGATAAGATTAAAACATAACTGAATAAATTGCATTG----------------------------------------------TTCACTGAATTTTAACAGAAGTTTCAGACTCTGGAGCAAGGTACACTCACCCATTAAGAACAGGAAGACAG------------------ATAAGTCCAGCATTGC--TTCTTGTATCCTG-------------GTATCTAATGTCCCTGTGATGAGCCCTCCTCTTTTGTGGCAGTTCTAGCTGTCACAAGGCCTCAGATCTCTGGTctgtgtctgcattttgttcctgattttagaaattaCTTCTGctcctttccttttctatgcCAGGGTCCCAGGTTT---------------------------------------------------------------------------------------------------------------------------GGCCT--CTTAGCT---------------CCATCTAG----------------------------------------------CCATATTGGACATACTTGCTAAGCACTTTGAGATTTTACCTGATAAAATGTCCTACTGGTCCTTGTATTCCTCCATTATCTGTCTGAATTCGTTGAGTTCCTGTGCTATTCTGCAACACTGCAACAGGGACCCAAAACATACCCTGAACTATAAA-ATATGGGTTGATTCATAAAAGTGTGTAAATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTCGGGAAGGTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAA----ATATAAGTATTCATAGTCAAATTATATCCTGTGATCTGATTATGCAATTCT-AATATACACCATAGATACTTGGAGAAGAATAA----ACAGATGTTGATGGTTTTGCGATTTTGTAAAGTTTCCA----------ACTGAGACAGTTAAGCAGTGCACCCCAACTAGTGACTGCATTGTAACATCTgaactcaaaaaatatattttca-aagtttGTCTTGGTTTTGGTCTTTTAGTTTGACTTCAA----------------------------------GGAAAATCTG-CACATCAAGTAGCCTAGACTCTTTCTATACCTCTTCACAGAATTATTCTTTGAttacctt-gttttctttcctctggtacatgagatttttctcattttcattatgGTTCTTA-CTTACAGAATT-CACAA-TATGGAAAGTACATAGTATTTTGTATTCATTCGACATTTTGTAAAATCACTGATATTTACAATTATGA----CAttaaacattttcaactttcaaaatgC-----AGAGCAAGTCTATA----AGGTGATTACTCACCTTTGCATCTCCTGGTATGCTGAGATAGGCCATTCGGGAAACAGTGTCCTGAGTGAAATTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatat----------atttaaaaaagaatgaatacagaTAAGAC------------CAATTATATGctaatg---------------aattttattattctttttcgtTTTAATGATAATTCTCAATTTATGTTCTGAAAGCAAGCTTGTATATGGCGGGCCATCTTAGCCTGTTC

a score=35588
s chr3           144865671 2145 + 160039680 ATTTTAAATTAGTTTGTTCTGCCATGAACTAAATGCTCATCTGGTAATCTAGTAAAATACCAAGAAATGAAGCAAAAAGCATGAAGGCACAT----GCACTGTAGAAGGGACTGG--AAATTGGGGAGAGGTAGTTGGGGAATTATTGTTGTAATGAGAGAAAACGTGGAATTTCCTCCAAAAACA----GTCAAATATAGCTGAATACAAGTTTGTAGAATGACATAAAATGCACTGGCGGGCATATTTTCTTGTTCATTTGTCGATCAGATTGGTTATTTTATTCACTGACTTCCAGACAAGGTTCCACTCACAGGAGAA-------------TACAGAGTGCAGGGAAAGGGTTTCTGCTCCACCTCCCTACAGAGTAA--CCATTGCAGTTCCGAGCTCCTGCCAGGGAGACCCAGCATCTGACCCTGCAGTGCTCAGTCCCCCTCTCT-GTGCTATTTCTAGCTTCTCCTAGGTCCCTGCTCCCAGGACTCTATCTATGCTTTGTTCCAGCTGTGGGGAATCACCCTTGCTTCCTTCCCTTCAGCTATCAGGGTCCCAGGTTCTGTTGCCCTCTCCCACCCAAGAGACAATTCCTGCATCAGCGGCTTTGATAGCACTTTTTTGTTGATGTTCCCCTAAGAAGCATGAACTTAGAAGGAAGGCTTGTGTTCTCCATCTTCTGAATGGGCCTGTCTTAGCTGGAGATGGCCAGTGCCTATCAAGATTACAGACATCATTTTGGCAGTAGCTGACATATACAGACAGCTTACCATGTGGAAGATGCTTGCTATGCACTT--AGGTGGTACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTGTTCC----CACTGCCCCAGGAAC-----ACATGACACATTTGGAACTATAAACATATAGGCTTATTCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATGAAACATGAAGCAATCATTTAGAGTCCAAAGACATGTCTTTTCCCCATTATGTGATTTTCAAAATAAAGCATAGAACTAACAACAACAACAACATAACAAATTGGGATAAGTG---GAATTAGAAAGGTCTTGATTCCTCAAATACTGAAACAG---ACACAG---ACCATGATATTTGACTT--TTGTGAAGTATC---AATCGGAAAATAATGTTTTGATAAGTTTGCCTTTGCTTTGCCCTCATTCTCTGGCCTCAGTGTCATATATTCCATGACTCTGGCAGGCAGAATGGGAAAAGATGTCATGTCAGGTCACCAGGACTCTCCACGTTTCTTCCTCC----CTGTTCTCAGATGCCTTTTGTTTTCTATCA------ACCCAAGGCTTCTTTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATA-CATTGTTCTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATGTGCTTAGAGCCTCT----TTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAATCAAAAAGAAGaaaagcaaaaacaaaacaaaaaacaaaaacaaaaaAACCTTAATGACTACATAAGACAAAAGTTTTATTA-TCTTCTCCTTTCTA--GATAATTCCTCATATTTGATCTGAAAAC-AGTTTATATATGCTGAACTACATTAG
s HiC_scaffold_1 131187219 1815 + 233722169 ATTCAAAATTAAGTAATTTCACAGTTAGCCAAATATTCATCTGAAAAT--------ATTCCAAGATTTAAAACAACACACA-GGAGGTAAGTTTTAGTATTGTGTAACAGTTTTTTCAGACAGGGAAGAGACAGTTGGGGAA-----------------AAAGGCATTGAGGTTCTTCAAAGAACAAGTTGTCACCTGCAGGTGAAGATATGGTTAAAACATAAC-------------------------------------------TGAATCAATTGCATTGTTCACTGAATTTTAACAGAAGTTTCAGTCTCTGGAGCAAGGTCCACTCACTCACACAGATCAGGAAGACAG-----------------------GTAAGTCCAGCACTGCTCCTTGTTTC------------CTGGTATCTAATGCCCCTGTCATGAGCCCTCCTCTTTTGTGGCAGTTCTAGCTGTTGCTAGACCTCAGATCTCTGGCCTGTGTCtgta-tttgttcctgattttagaaattacttctgctcctctccttttctctgccAGGGTCCCAGGTTT---------------------------------------------------------------------------------------------------------------------------GGCCT--CTTAGCT---------------CCATCTAG----------------------------------------------CCATATTGGACATACTTGCTAAGCACTTTGAGATTTTACCTGATAAAATGTCCTACTGGTCCTTGTATTCCTCCATTATCTGTCTGAATTCGTTGAGTTCCTGTGCTATTCTGCAACACTGCAACAgggaccgaaaaaaaaaaaatccctgaactATAAA-ATATGGGTTGACTCATAAAAGTGTGTAAATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAA----ACATAAGTATTCATAGTCAAATTATATCCTGTAATCTGATTATGCAATTCT-AATACACACCGTAGATACTTGGAGAAGAATAA----ACAGATGTTGATGGTTTTGCGATTTTGTAAAGTTTCCA----------ACTGAGACAGTTTAAGCAGTGCACCCCAACTAGTGACTGCATTGTGTAACATCTgaactcaaaaaata-tattttca-aagtttGTCTTGGTTTTGGTCTTTTACTTTGACTTCAA----------------------------------GGAAAATCTG-CACATTAAGTAGCCTAGACTCTTTCTATACCTCTTCACAGAATTATTCTGTGAttacctt-gttttctttcctctggtacatgagatttttctcattttcattatgGTTCTTA-CTTACAGAATTACACAA-TATGGAAAGTACATAGTATTTTGTATTCACTCAACATGTTGTAAAATCATTGATATTTACAATTATGACAT---TAAACACTTTCAACTTTCAAAA------TGCAGAGCAAGTCTACA----AGGTGATTACTTACCTGTGCATCTCCTGGTATGCTGAGATAGGCCATTCGCGAATCAGTGTCCTGAGTGAAATTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGTTTAaaggt----------atttaaaaatgaatgaatacagaTAAGAC------------CAATTATATGctaatg---------------aattttattattctttttccttttaatgataACTCTCAATTTATGTTCTAAAAACAAGCTTGAATATGGCGGACCATCTCAG

a score=21503
s chr3           144866137 818 + 160039680 ACTCTATCTATGCTTTGTTCCAGCTGTGGGGAATCACCCTTGCTTCCTTCCCTTCAGCTATCAGGGTCCCAGGTTCTGTTGCCCTCTCCCACCCAAGAGACAATTCCTGCATCAGCGGCTTTGATAGCACTTTTTTGTTGATGTTCCCCTA---------AGAAGCATGAACTTAGAAGGAAGGCTTGTGTTCTCCATCTTCTGAATGGGCCTGTCTTAGCTGGAGATGGCCAGTGCCTATCAAGATTACAGACATCATTTTGGCAGTAGCTGACATATACAGACAGCTTACCATGTGGAAGATGCTTGCTATGCACTTAGGTGGTACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTG----TTCCCACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATTCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATG-AAACATGAAGCAATCATTTAGAGTCCAAAGACATGTCTTTTCCCCATTATGTGATTTTCAAAATAAAGCA
s HiC_scaffold_1 131026039 736 + 233722169 ACTGTATTTGTACTTTGCTTCAGTTGTGAAG-----CTACTATATCTCTCCCTTTCCCTGCCAGAGGCCCAGGCTCAAGCATTTTGCCCCATCT----GGCTGCTTGTGCTTTATC--CTCTGCCCAGACTTTTTCTATGATACACCCCTACTCCACCAAATGAGcgtttgttttgaatttttggttCTTTCTTTACTCTCCTGAGTGTGACTGATCTAACTGATGATTGACATTGGCTGTGTAGGT-------------------------------------------------------------------------GGTGATAATGAATAACATTTATTG-------TGCTATTTGTCCATAATCTGCCTCAATTTTTTTGATGCCTGTCTCTCTGCTTCATATTGTCTCTGGGACCTATAACATATCCCaagttatgaaaatataaatttacttATAAAACTCTGTGAATTACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTGCTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCTAAAATGTGCAGTGCAAACATTAAATATCCATT----GTCAAATTAATTTCTGTGTTCTCATtatac-atttctaaaataaatca

a score=34313
s chr3           144866412 1411 + 160039680 CAGCTTACCATGTGGAAGATGCTTGCTATGCACTT-----AGGTGGTACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTGTTCC----CACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATTCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCA------------AACACCCACCTAAAATTGTCAATGAAACATGAAGCAATCATTTAGAGTCCAAAGACATGTCTTTTCCCCATTATGTGATTTTCAAAATAAAGCATAGAACTAACAACAACAACAACATAACAAATTGGGATAAGTGGAATTAGAAAGGTCTTGATTCCTCAAATACTGAAAC-----AGACA---CAGACCA--TGATATTTGACTTTTGTGAAGTATCAATCGGAAAATAATGTTTTGATAAGTTTGCCTTTGCTTTGCCCTCATTCTCTGGCCTCAGTGTCATATATTCCATGACTCTGGCAGGCAGAATGGGAAAAGATGTCATGTCAGGTCACCAGGACTCTCCACGTTTCTTCCTCC----CTGTTCTCAGATGCCTTTTGTTTTCTATCAACC----CAAGGCTTCTTTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATA-CATTGTTCTTTCATTTTGAAGATGGTAAAGTTATT-GTACTCACATTTATGATGT------GCTTAGAGCCTCTTTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAATCAAAAAGAAGaaaagcaaaaacaaaacaaaaaacaaaaacaaaaaAACCTTAATGACTACATAAGACAAAAGTT--TTATTATCTTCTCCTTTCTAGATAATTCCTCATATTTGATCTGAAAAC-AGTTTATATATGCTGAACTACATTAGCTTTCTC
s HiC_scaffold_1 131111003 1345 + 233722169 CATCTGGTCATGTGGAACATACTTGCTAAGTATGTTTTTGAGATTTTACCCAAAAAAATTTCCTACTGGTCATTGTATTCCTCCATTATCTGTCTGAATTTGTTGAGTTCCTGTGCTACTCTGCAACATTGCAACAGGGATCCAAAACATGCCCTGAATTATAAA-ATATGAGTTGATTCATAAATGTGTGTGAATGACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGCTTGCTTTGGCTTGAAGGTTATAAATCCATGTGAAATGGATTAAATCCACCTGAAATGTTCAATGAAA----ATATAAGTATTCACAGTCAAATTATAACCTGTGATCTGATTATGCAATTCT-AATATATATCATAG--------ATACTTGGAGAAGAATAAACAGATGTTGATGGATTTgtgattttgtaaaattttca---acTGAGACTGTTTAGGCAGTGCACTCCAACTAGTGACTGCACTGTGTAACATCTGAACTCGAAAAGTATATTTTTGGAAGTTTGTCTTGATTTTGGTCTTATACTTTGACTTCA-----------------------------------AGAAAAATCTGCACATCAAGTAGCCCAGACTCTTTCCATACCTCCTCACAGAATTATTTTTtgattac-tttgttttctttcctctggtacatgaattttttctcattttcgaA--------------AGAATTACACA-ATATGGAGAGTACATAGTATTTTGTATTCATTTGACATTTTGTAAGATCATTAGCATTTGCAATTATGACATTAAACAGTTTTCAACTT-----TGAAAATGC-----AGAGCAAGTCTATAAGGTGATTACTTACTCACCTGTGCATCTCCTGGTATGCTGAGAGAGGCCATTTGGGAATCAGTGTCCTGAGTGAAATTTTCTGTCAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGACTGTGTGGT--AGGTGACAAGAAAGAAAGTGTCCTTTCTCACAGTGCTGTCAACTGTCACAGTGTCGTTTATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatat----------atttaaaaatgaatgaatacagaTAAGAC------------CAATTATATGCTAATg--------------aagtttattattcttttttcttttaatgttaacTCTCAATTTATGTTCTGAAAACAAGCTTGTATATGTCGGACCATCTTAGACCTTTC

a score=11528
s chr3           144866596 1052 + 160039680 GGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCT----------------AAAATTGTCAATGAAACATGAAGCAATCATTTAGAGTCCAAAGACATGTCT----------TTTCCCCATTATGTGATTTTCAAA-----ATAAAGCATAGAACTAACAACAACAACAACATAACAAATTGGGATAAGTGGAATTAGAAAGGTCTTGATTCCTCAAATACTGAAACAGACACAGAC--CATGATATTTGACTTTTGTGAAGTATCAATC--GGAAAATAATGTTTTGATAAGTTTGCCTTTGCTTTGCCCTCAT---TCTCTGGCCTCAGTGTCATATATTCCATGACTCTGGCAGGCAGAATGGGAAAAGATGTCATGTCAGGTCACCAGGACTCTCCACGTT--------TCTTC--CTCCCTGTTCTCAGATGCCTTT-TGTTTTCTATCAACCCAAGGC----TTCTTTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGA------AGTACAT--ACATTGTTCTTTCATTTTGAAGATGGTAAAGTTATTGTACTCACATTTATGATGTGCTTAGAGCCTCTTTGCAAAAATACCGTTA---------------------------GGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCT--TGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGT
s HiC_scaffold_1 131293443 1050 + 233722169 GGTTACCTGCTCCATTATCCAGTAGTTCCAAGGTGACTGTTTTCCCATTTGCCGATTCAATCACAGCTGTGACCTGGGCCCCGAGAATTGGTGAAGCTCCTTGGTGAATATTTGCATAAACTATCATAGGACTGGGGAATTTGCCTGTGTCCTTGTTCATTTTGGAGGTCACTGTAATCGGAGGCAGGGTAGCACTTGATGCACGTGAGGTGACTGTCAGGGTGAGAGTTTGTGAGCTC------GCTTGCAGACTGTATTTCCAAATGCCAACCTGACCAAAATAGATGCAGACATTTCCAATAAATAACTATGACAGAAGCTTGCCTTCAGTGGCACGTATAGGAAAAGGCTGTCTGACACAAGTGTGTTGCAAGCATATCTAAGACGTGG-----GCATCACCGGCACTTTGTCA------GCCAAGGCACATTTCAGAGGGTTTG----------------------CACAGCCTACATGGTTCTCCTCGTTGGGAAGATCCCAATCAGAGAAAATAAGGTCTGAA------------AGCTGGGCCCTCATTTATCATTGGCCT-GGTTTCCTAAG--ACATGGATTGCTGAGGTAGAAGG----AACATTTTTTGT---GCTGTCAAAGCTTCCAGCGTTGTTTTGCATCTTCAACACTATGTAATTGGAAGATTCTGTCTTTAGTATCTGCACAAAACATCATTAGTTTCCTTTCTCTTGACATGCTGGC-------------AAACTGAGTGATTTTCCACTGCATGGAGATTTTCCCATCATTTT------------TTTATTGATTCAATACTTACTCTCCTCTTAGCAACTATTCTAAAAGCCACagttattttgttttaccttGTCAGGgtatgagaaggaaaaagaaaatcctgaCT----TCGTACCTTAGCGATGTCTGGGACCTGGAGGTAGGCCATTTTGCTGGCTGCATCCACTACGAAACCATTCTGCCTTGTTCCACTGGGATCCCAGAGAAAGAT--TTGGGGCTGCTGATTTGTCCATGTGATAAGGAACAATGTGTCCTTTCCTACTGTGTCATCCACAATCACTGTGCCATTCATCCACTGGCGGTTCTGGAGGGTTGCTCCTCTACTCTCCAGCTGT

a score=6538
s chr3           144866598 278 + 160039680 TTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACGCGGGCTCCAATGATGGGAGTGTACCCTTGTAGAACTTCTGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGT-CCGTGTTT------ACCTTAGTATTTACAGTGATTGGTGGCACAGAAATACTTGCTGCCTGGGAGGTTACTGTAATCGTTAGTATCTCTGAGTTT---TCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAA
s HiC_scaffold_1 130982926 281 + 233722169 TTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGG-------TAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaa

a score=13287
s chr3           144867284 507 + 160039680 AGGATCACACAGGTAAGGGAAGTACATACATTGTTCTTTCAT---TTTGAAGATGGTAAAGTTATTG-TACTCA--CATTTA-----TGATGTGCTT--------AGAGCCTCTTTGCA------AAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTAAAACAGTGTCATTCAGCCAGAGGCTATTGGTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAATCAAAAAGAAGaaaagcaaaaacaaaacaaaaaacaaaaacaaaaaAACCTTAATGACTACATAAGACAAAAGTTTTATTATCTTCTCCTTTC-TAGATAATTCCTCAT-ATTTGATCTGAAAACA
s HiC_scaffold_1 131028981 473 + 233722169 aggataatacataaatgaaaagagCATTC--TATTTTATCACAGCTTTGAGCATGGTGCAGTTCTTGGTACTCAGGCAtctaaaaaattatgtttttgacattaaacaatttatttttatgttctgaaat----tttaaaagaaatctagaaGATGACT----GCTTACCTGTGCTGTTCCTGGAATACTGAGATAGGCCATTCTGGAAGCAGTGTCTTCTGTGAAACTTCCTACCGGTTTTCCACTGGGAGCCCAGAGAGAAACACTGGGAGGCTGTTTTTCCCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTATCACAGTGCCATTCATCCAGGGATCATTGTTCAGGGTTAACCCCTTACTTTCAAGCtgtttaaac---------acattttaaaaa------------------------------------------ttaatgactgCAGAAGGAAAtcatttcactctttttttcttttaaagattgtTCTCAATAATCTGGCCTGAGAGCA

a score=10277
s chr3           144872147 505 + 160039680 TGACACATT----TTCTTGGTTATGGCAAAAGTGACCACAAAACCTCTAGGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGTGATAGGCTACTTAT-TTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCATTTAG---ATTAAATTAAAT---TGTCATAAAGCCTTTAAGGTCATCTTTGAAATGTTAAGTTTAATTTAATGT-ATCATAACTGTGAAGCACAACCCACCTTATTATCTTAGTAT----GGCAACCTCAGT----TGCATGAGGCATTTC-----ATCTGGTTATAGATATGAAAGGCACTAGACTCTATATATTCACAGATTTTCGTATAGACCTTTAGGGAAAATTATGAATTTTTATTTACATCATTTA
s HiC_scaffold_1 131078511 492 + 233722169 TAACACATTATTTTTTGTGGTTATGGTAAATGCAAACACAACTCCCCCGCTGTTGG---AGCTCTCACCTGAATGGACTTCTGACTGAGACCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTGAGCCTTATCTGAAGCAGAAAATTCATTTCCTCCTAAAATGTAAATGTGCAAGTAAGGATAATTTCTAGAAAATAAGTGCTTA-CACA-TTTAGTGATTAATAAGGCAA-AGTTTAATGAAACTCATAGTTTCTACATGTACCATTAAAACAGACCAATGTCAGATAG-CTGTAAGATTAATTCTAAAAtgctaa-tttaaaataatgtaaccAGAACAG------AAAACATACCATCATACCTCAGCATCAAATGCCAGCTCGATTAAATACATCAAATACATCAAATGATATGGTTACAATTCTGTG-----------TATTTAAGTTCACAGTTTTTC-CATAGTACTGTAGAGAA------------TTGTTCACTTTATTTA

a score=9012
s chr3           144872154 498 + 160039680 TTTTCTTGGTTATGGCAAAAGTGACCACAAAACCTCTAGGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGTG----AT-AGGCTACTTATTTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCATTTA---GATTAAATTAAAT---TGTCATAAAGCCTTTAAGGTCATCTTTGAAATGTTAAGTTTAATTTAATGTATCATAACTGTGAAGCACAACCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAG----GCATTTCATCTGGTTATAGATATGAAAGGCACTAGACTCTATAT----ATTCACAGATTTTCGTATAGACCTTTAGGGAAAATTATGAATTTTTATTTACATCATTTA
s HiC_scaffold_1 131115922 488 + 233722169 TTTTCGTGGTTAAGGTAAATGCAAACACAAACTTCCCTCTGTTGG---AGCTCTCACCTAAATGGACTTCTGACTGAGACCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCA--GAGTCCATTGTTCTCAGCGTTATCTGAAGCACAAAAGTGATTCCCTCCTAAAATGTAAATGCACAATGAGgttaa--attctaaaaaaataagTGCTC---ACACATTTTAGTGATTATAATGGGAAAAGTTTAATGAAAGACATAGTTTCTACATGTACTATTAAAACAGACCAATGTCAGATAG-CTGTAAGATTAATTCTGAAAtgctaa-tttaaaataatgta----accAGGAAGGAAAAAGATACCATCATGCCTTAGCATCA-AATGTCAACTAGATTAAATACACAAATGATCAGATAATGAAGAATATGGTTACAAATCTGTGTATTTAAGTTCA-GGATTTTTACACAGTACTTTTGGAGAA-----------TTGTTCACTTTATTTA

a score=11200
s chr3           144872154 456 + 160039680 TTTTCTTGGTTATGGCAAAAGTGACCACAAAACCTCTAGGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGTG-ATAGGCTACTTATTTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCATTTA---GATTAAATTAAAT---TGTCATAAAGCCTTTAAGGTCATCTTTGAAATGTTAAGTTTAATTTAATGTATCATAACTGTGAAGCACAACCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGCATTTCATCTGGTTATAGATATGAAAGGCACTAGACTCTATATATTCACAGATTTTCGTAT
s HiC_scaffold_1 131242198 438 + 233722169 TTTTCGTGTCTATGGTAAATGCAAACACAAA---CCTACCGCTGTGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCGTTATCTGAAGCATAATAGTGATTTCCTCCTAAAATGTAAAAGCGCAAGCAAGgttaatttctagaaaataagTGCTTA-CACA-TTTAGTGATTAATAAGGCAAAAGTGTAATGAAAGTCACAGTTTCCACATGTACTATTAAAGCAGACCAGTGTCAGATAG-CTGTAAGATTAATTCTGAAATg------ctaatttaaaataagataaccTGGAAGGATAAGATACCATCATATCTCAGCATCA-AATGTCAGCTAGATTAAATACATCAAACGATCAGACA-ATGAAAG-----------TATATGGTTACAATTCTGAGTAT

a score=13101
s chr3           144872154 1560 + 160039680 TTTTCTTGGTTATGGCAAAAGTGACCACAAAACCTCTAGGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGTG-ATAGGCTACTTATTTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCAT---TTAGATTAAATTAAAT---TGTCATAAAGCCTTTAAGGTCATCTTTGAAATGTTAAGTTTAATTTAATGTATCATAACTGTGAAGCACAACCCACCTTATTATCT-----------------TAGTATGGCAACCTCAGTTGCATGAGGCATTTCA--TCTGGTTATAGATATGAAAGGCACTAGACTCTATATATTCACAGATTTTCGTATAGACCTTTAGGGAAAATTATGAATTTTTATTTACATCATTTAGATTTTTTTCAGAGGAAAATAGATTAGAAGCAGAAAACTGGAAAGATTAAAGAATTGCTGTATCAAGGAATCTTGGCAATGACTGGATACTACTTAAAATATTTGTGACAGCAATAAATTATAAAATGACCATAATAGTGTTTGGAAGTTCGTATCGCTAGCCACAAAAATCCCAGGTATATATGTTTGGTACGATGAAATTCAAATTTCTATTATAATTGATACTTGTACTACTGGTTTTGTATTCTCTGCTATATTTGAGAATTACTAGAAGCATGTAACCAGTTTTCATCACATCTAAATATTAACAGAAGTCACCATACTTAATATTAAATAAGTTGCCATAGTTTGTATTTTCTCATTGTCTCTTAGTCCTGGAAAATCCTAGACTTTGTTCAGTTCCTGTCTCAGGAGCCACTTGATTCATTTTCCTCCTTTCCCTTCCTTGCTTGCTACAATGCTTTGGGAGCATGGAAGGTTTGTAAGTCTC--AATTAAATTT--------TACTCTATACTCTTCCTGCTATGAAGGAATGCGATCC----Atgtgttcagattgactgttttatgtatctttccaggcaactggacaaagaatgttgtgagaacacaggatgggtctggtctgtttgtctctgctctccaatccctggcctggctcttgcaaaa-------ttaagcatagaagatgtagttaaatgTCATCTCTTC-ATTTATACACAACAATTGAAAGTCTGTGACATAGAGATCATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATACTATTATCATT-----TCATACTAGATTATCTATCCTGATAGAAAATT--AGAAAAGAGAAACTACAGAAAAA-GTATAGAAT---AGAGATAATTTCTGTTTTAGAATCATAGAATTTATCTTCAATA
s HiC_scaffold_1 131191772 1249 + 233722169 TTTTCGTGTCTCTGGTAAATGCAAACACAAA---CCTACCGCTGTGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCCTTATCTGAAGCcaattcctcctttcctcctaaAATGGAAATGCACAAGCAAAgttaatttctagaaaataagTGCTTAC-ACA-TTTAGTGATTAATAAAGCAAAGGTTTAAAGAAAGTCACAGTTTTCACATGTCCTATTAAAGCAGACCAGTGTCAGATAGC-TGTAAGATTAATTCTGAAATgctaa------tttaaaataagataaccTGGAAGGACAAGATACCAGCATATCTCAGCATCAAATGTCAGCTAGTATAAATACATCAAATG-ATCAGACAATTAAAGTATGGTTACAGTTCTGTGTG-----------TTTAAGTTCATGG-TTTTTATGCAGTACTGTAGAGAA------------TTATTCACTTTATTTA----------------------------------------------------AAGTACAGTTCTAATGAAGTTGG----TGCTTAGATTCTGC--AGGCTAATTACATCAGACATAAAACAT-------------TAGTGTt--------------------------------------------------------aatctatattcttttttt-----------------ttggcttttt--------------------------------------ccattttt----------------------------------------------------------tttttttttttttatcg-------gtactgggga--------------------tcgaactcacga--------------------------------ctgcctgctt-------------gcaaggcaggcgcttatgccgctgagctaaatccccaacccctaatcTATATTCTT------AAGAAGAAGTGTTGTCTGGTTATGTGATTTAATtagcagttttcttt-tctttccatacaATTCAGCACCAAGTACCTTCAGGACAGAGATTGTGTCTGGG----TTGACTATGGTCTCCTGTCCCTGGCACAGCATCCTCAGAGCAGGAGCTCAAG---AGAAGGTGCA--CAGCTGTCAACCCAGAGATTAACGCCTTCTTACCCAAAGCctagaatgtataaaaatattttaacctgTTTGGTTCCTCATCTGTGTGACTGCTGGATCTGCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAACATTTTTCAG-GCACAGTTAGCACTGTGAGTCATAC-AGATCAATGAGCA-AACAGACAAAtacagagaacagaaagaaaaaaaaaacatgtagagTAGAAGAGAGCACCTTTGTTATAAAGTC--AGAATCTAGAATCAACA

a score=13568
s chr3           144872154 1508 + 160039680 TTTTCTTGGTTATGGCAAAAGTGACCACAAAACCTCTAGGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGTG-ATAGGCTACTTATTTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCATTTA-GATTAAATTAAAT---TGTCATAAAGCCTTTAAGGTCATCTTTGAAATGTTAAGTTTAATTTAATGTATCATAACTGTGAAGCACAACCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGCATTTCATCTGGTTATAGATATGAAAGGCACTAGACTCTATATATTCACAGATTTTCGTATAGACCTTTAGGGAAAATTATGAATTTTTATTTACATCATTTAGATTTTTTTCAGAGGAAAATAGATTAGAAGCAGAAAACTGGAAAGATTAAAGAATTGCTGTATCAAGGAATCTTGGCAATGACTGGATACTACTTAAAATATTTGTGACAGCAATAAATTATAAAATGACCATAATAGTGTTTGGAAGTTCGTATCGCTAGCCACAAAAATCCCAGGTATATATGTTTGGTACGATGAAATTCAAATTTCTATTATAATTGATACTTGTACTACTGGTTTTGTATTCTCTGCTATATTTGAGAATTACTAGAAGCATGTAACCAGTTTTCATCACATCTAAATATTAACAGAAGTCACCATACTTAATATTAAATAAGTTGCCATAGTTTGTATTTTCTCATTGTCTCTTAGTCCTGGAAAATCCTAGACTTTGTTCAGTTCCTGTCTCAGGAGCCACTTGATTCATTTTCCTCCTTTCCCTTCCTTGCTTGCTACAATGCTTTGGGAGCATGGA------AGGTTTGT-AAGTCTCAATTAAATTTTACTCTATACTCTTCCTGCTATGAAGGAATG-CGATCCAtgtgttcagattgactgttttatgtatctttccaggcaactggacaa--agaatgttgtgagaacacaggatgggtctggtctgtttgtctctgctctccaatccctggcctggctcttgcaaaa-------ttaagcatagaagatgtagttaaatgTCATCTCTT-CATTTATACACAACAATTGAAAGTCTGTGACATAGAGATCATGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATACTATTATCATTTCATACTAGATTATCTATCCTGATAGAAAATTAGAAAA--GAGAAACTACAGAAAAA
s HiC_scaffold_1 131153767 1181 + 233722169 TTTTCGTGGTTATGGTAAATGCAAACACAAACCTCCCGCTGTTGG---AGCTCTCACCTGAATGGACTTCTGAGTGAGATCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTCCACAGCGTTATCTAAAGCCAATTCCTGTTTTCCTCCTAAAATGTAAATGCACAAGCGAGgttaatttctagaaaataagTGCTTAC-ACA-TTTAGTGATTAATAAGGCAAAAGTTTAATGAAAGTCAGCTTCCACATGTACTATTAAAGCAGATCAGTGTCAGATAGC-TGTAAGATTAATTCTGAAATGCTAA------TTTAAAGTCACGTAACCAgggtgc-----------tgggaatttagctcagcagcgtaagt-gcatg--------------------------------------ccttgcaagtgcgcag--------------------------ttgtgaattc----------------gattcccagtaccaaaaaaaaaaaaaaaaaaaaaaaa-----------aaagaatcac-atatcACATAATC----------------------------------------AGGAAGGTAAAAGAT-ACCATCAT------------------------GCCTCAGCA--------------------------------TCAAATATCAATTAGATTAAATAC----ACAAATG-------------------ATCAGATAAT-----GAAGAATATG---------------------------------GTTACAATTCTGTGTATT---TAAGTT--CACGGTTTTTA------CACAGTACTTT-----TGGAAAACTGTTCACTTTATTTAA---------------------GATACA-------------------------GTTATAATGAAGTTGTTGCCTAGATTTTGCAGGCtaattaaatcagaaacaaagtACAAACTATATTCCTA-TGTTAGGAAGAATTGTCTGGTTATGTGATTTAATTagcagttttcttt-tgtttccatacAACTCGACTCTCCAAGTACCCTGAGAACAGAGATTGTGTCAGGT----TTGACTCTGGTCTCCTGTCCCTGGCACACCACCCTCAGAGCAGGAGCTCAAG---AGAAGGTGCA--CAGCTGTCAGCCCAGACAGTATCACAGTCCTATCCGAAGCCCGGAAtgtatagaaaacattttaaccTGTTTCAATGCTCATCTGTGTGACTACTGGCTCTGCAGATTGTCCCAGAGCAATAAAATGAACGATGACCCCGCTTTCTTTCACTGAATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACGTATTTCAG-GCACATTAACCACTG-----TAGATCAAACAGATCAATGGGAAAATagacaaatatgaaaataaagaaaaa

a score=11564
s chr3           144872155 1504 + 160039680 TTTCTTGGTTATGGCAAAAGTGACCACAAAACCTCTAGGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGT--GATAGGCTACTTATTTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCATTTAGATTAAATTAAATTGTCATAAAGCCTTTAAGGTCATCTTTGAAATGTTAAGTTTAATTTAAT-------GTATCATAACTGTGAAGCACAACCCACCTTATTATCTTAGT---ATGGCAACCTCAGTTGCATGAGGCATTTCATCTGGTTATAGATAT---GAAAGGCACTA-GACTCTATATAT---TCACAGAT--TTTCGTATAGACCTTTAGGGAAAATTATGAATTTTTATTTACATCA------------TTTAGATTTTT------TTCAGAGGAAAATAGATTAGAAGCAGAAAACTGGAAAGATTAAAGAATTGCTGTATCAAGGAATCTTGGCAATGACTG-------------------------------------GAT------------ACTACTT-----AAAATATTTGTGACAGCAATAAATTATAAAATGACCATAATAGTGTTTGGAA------------GTTCGTATCGCTAGCCACAAAAATCCCAGGTATATATGTTTGGTACGATGAAATTCAAATTTC-TATTATAATTGATACTTGTACTACTGGTTTTGTATTCTCTGCTATATTTGAGAATTACTAGAAGCATGTAACCAGTTTTCATCACATCTAAATATTAACAGAAGTCACCATACTTAATATTAA-----ATAAGTTGCCATAGTTTGTATTTTCTCA-----------------TTGTCTCTTA-------------------------------------------------------GTCCTGGAAAATCCTAGA-------------------------------------------------------------------------------------CTTTG---------------------------------------------------------------------------------TTCAGTTCCTGTCTCAGGAGCCACTTGATTCATTTT-CCTCCTTTCCCTTCCTTGCTTGCTACAATGCTTTGGGAGCATGGAAGGTTTGTAAGTCTCAATTA-AATTTTACTCT---ATACT--CTTCCTGCTATGAAGGAATGC-GATCCAtgtgttca------gattgactgttttatgtatctttccaggcaact----ggacaaagaatgttgtgagaacacaggatgggtctggtctgtttgtctctgctctccaatccctggcctggctcttgca-aaattaagcatagaagatgtagttaaatgTCATCTCTTCATTTATACACAACAATTGAAAGTCTGTGACATAGAGATCATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATACTATTATCATTTCATACTAGATTATCTATCCTGATAGAAAATTAGAAAAGAGAAACTACAGAA
s HiC_scaffold_1 131030754 1744 + 233722169 tttcttatttatggCTAAATGCATAGTTGAAAGCCCAAGGA-GTGAAAGCTCTGACCTGAAAGGATCCCTGGGAGAGATGAGCATTTCCTAATCCAAAGGGCCTGAAAGCATCAGTGAGACTGTTCCTGTAGGCTTGATCTGAAGCATAATAATGTTTTCCTCCTAAAATGTAAATCCATTAACAAAGTCACTTTCTCAAAAGCAGC-TATTTATCACATTTTAATGACTTATAAGGTAACAATATAAACAGAAACCACAGTTTtgct---attaaaataga-------aaattctgaaatgaGATGGATACAAAGATTAActcaattttatttcagaaatgctATAATTAGGAAGCAC-------CTCATCATCCTGCTTACCTGAGAATTTTAGTCTGCTGAAATACATCAAATAACCACAGAATTCTAAAAAGATGCTACAATTCTACATACAAGTCCTTGATGTCTTTATGCAGTCCTTTAGG-AGAACTGTTCACTTTTCCTTAAGTTACACTCTCAATAGTATTGACTTTTAGGTTGTCCAGTTGA-----GGTCAgaatcaacaaattaaaaaagTTAGAGAGATGCAATATTCAGTTATATGGAGAGTAACTGTCACTGAGGAagtagaaaaatagcaaaaaagcaGAATGATTCCCCCAAATTTACTAATTTTGTGGAGCCATTTGAGTCAGAGATAAATTTTAAAGTGGCcctaaatacattttgaaaaaaaattggatGTTTATGCAACTAGGCATTTATAAAGCAATtatatat--ttggtatatttagATACCAACTTAATGCAATAATTGGCA----TGTTATAAATTATTCATTCTTTGCCACATTT----------AGAAACAtg------------actctaaataaaaaataacag---ctaCCATGGTTAATATTTACCTGGAAATGTCATTGTTATTTAGAGCTTTTCAGCCTGAGCTTCTGTCAGTTGTATCCTACCTTATCCAGTGATGGGTGGACCTATAGCATAGGTGGTGCAGTGGGCTGTTTACTGTCCTCGAAAGCTCTAAAGGTTAGCCATCAGTGGGCTTATTCTATGGTCTCAGGGATGGGAATCTATGCTGTGGGCTCATGGGAATACTGTTCCCTCCATGTGCCTTGCACTGTCACTGTAACATAATATTTTCCCCCTTCATGCCCTAGTTATCTTCTCTTACCCTTTTCCAAAGAGAAATTGACACCTTCAAATCCCAGCTCAGAAGTCACCTCATTTCTGTTACCTTCTGTCCCTTACT------CTGTACAGTCGTGGGAAAATTGATGGCTTCCTCTGCTCACATACAACTTTATTCTCATATACTGTATTCCTCTTGTGAAggaattttgtttcattattttattatgtgactagcaattttattcatttttc-----accTTGTGGGACTGTGAGCACCATGAAAATGGAGA----------------------------------------------CCTGCACAGGTGGAGCTCAAGAAAATTTGTCAG--GTTCTATGTTCATGTATTGCC-----TTCAGAG-----AATATATGGATCATAATTTACCTGTTATACTGCTCATCACACTTAGTATGGGATCAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCCTTCTATTTGATGATGTTTTTCCTTAATTACCTACAAACAGAATTCAGGA---CATTATCAGTTGTTCCTCGATTGAATGGACAGATGAggaattagaaaaaagagaaaataaaa

a score=7600
s chr3           144872192 243 + 160039680 GGGATGGGAAAACGCTGACCTGAAGTGACTTCTGGGTGACATCAACGTTTTCTGAAGCCAGGGCCACAAAAGCATCAATGAGGCCATTGTTCTGGGCTTCATCAGAGGCATACATATGCTTTCCACCTAAAATGTGAGTG----ATAGGCTACTTATTTTTGTAGAACAAGAGTTCTTACCATACTTTAACGATTAAGGAGATAACAATTTAAATAAAATCAAGATTTCCATTTAGATTAAATTAAA
s HiC_scaffold_1 131295996 244 + 233722169 GAGGAGGAAAAACTCCTACCTGGATGGAGCGCTGAGCGATGGCGCCATTTCCTGAGGAAAGGGCCCCAAAAGCATCAATGAGGCCATTGTTTTGAGCCTGATCAGAAGCATATGTCTGCAAACCTCCTAAAATGCAATTACATCATCAGAAGTTATTTTCCAGACAGCAAGTGTTC--ACAACACTTTAGCTGTTGCTAAAATGAtggaatacataaaataaatatcg-catttttattaaagtaaa

a score=10459
s chr3           144873142 520 + 160039680 AATTAAATTTTACTCTATACTCTTCCTGCTATGAAGGAATGCGATCC----Atgtgttcagattgactgttttatgt-atctttccaggcaactggacaaagaatgttgtgagaacacaggatgggtctggtctgtttgtctctgctctccaatccctggcctggctcttgcaaaat-taagcata---gaagatgtagttaaatgTCATCTCTT-CATTTATACACAACAATTGAAAGTCTGTGAC--ATAGAGATCATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATACTATTATCATTTCATACTAGATTATCTATCCTGATAGAAAATTAGAAAAGAGAAACTACAGAAAAA
s HiC_scaffold_1 131079057 503 + 233722169 aattaa----taaTCTATATTTCTA-TGTTATAAAGAAATATTGTCTGGTTATGTGATTTAattagcagttttgttttctttctccaagTTCCC---------------CGAGAACAGAGATTGTGCCTGGTTTGATT----CTGGTCTCCAGTTCCTGGTACAGCATTCTCAGAGCAGGAGCACAAGAGAAGGTGCACT--GCTGTCAGCCCAGACAGTAACACAGTCCTATCCGGAGCccagaaaggatagaaaacacTT-TAACCTGTTTCAATGCTCATCTGTGTGACTGCTGGATCCGCAGATGGTCCCAAGGCAATAAAATGAATGACGATCCCGCTTTCTTTCACTTTATTAACACAATTGCTTGCACCGTTGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAATGTATTCAGGCACATTA--AGCACTGTAGGTCAAACAGATCATTGGGAAAGTAgacaaatatgaagaaaataaagaaaaa

a score=13033
s chr3           144873147 604 + 160039680 AATTTTACTCTATACTCTTCCTGCTATGAAGGAATG-CGATCCAtgtgttcagattgactgttt-tatgtatctttccaggcaactggacaaagaatgttgtgagaacacaggatgggtctggtctgtttgtctctgctctccaatccctggcctggctcttgcaaaat-taagc---atagaagatgtagttaaatgTCATCTCTT-CATTTATACACAACAATTGAAAGTCTGTGACATAGAGATCATGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATACTATTATCATTTCATACTAGAT-TATCTATCCTGATAGAAAATTAGAAAAGAGAAACTACAGAAAAA-GTATAGAATAG-AGATAATTTCTGTTTTAGAATCATAGAATTTATCTTCAATAATCCTTGAAGAACTTAAACAATTTTTCTGTCCTCCTT
s HiC_scaffold_1 131116596 588 + 233722169 AGTGTTAATCTATATTCCTA-TGTTATGAAGAACTGTCTGGGTATGTGATTTAATTAGCAGTTTCTAT---TCTTTCCATACAAGTCGGCTCCAAGTACCCTGAGAACACGAGATTG---TGTCAGGTTTGACTCTGGTCTCCTGTCCCTGGCACAGCACCCTCAGAGCAGAAGCTCAAGAGAAGGTGCA--CAGCTGTCAGCCCAGACAGTATCACAGTCCTATCCGAAGCCCGGAAtgtatagaaaacattttaaccTGTTTCAATGCTCATCTGTGTGATTACTGGCTCTGCAGATTGTCCCAGAGCAATAAAATGAATGATGACCCCGCTTTCTTTCACTTCATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACGTATTTCAG-GCACATTAACCGCTGTAGATCAAACAGATCAATGGAAGTagacaaatatta---agaaaataaagaaaaatatgtagaGTAGAAGAGAATCTTTGGTTTAAAGTC--AGAATCTACAATCaat------------atctgagttattttttttttttcttt

a score=12814
s chr3           144873147 527 + 160039680 AATTTTACTCTATACTCTTCCTGCTATGAAGGAATGCGATCC----Atgtgttcagattgactgttttatgtatctttccaggcaactggacaaagaatgttgtgagaacacaggatgggtctggtctgtttgtctctgctctccaatccctggcctggctcttgcaaaa-------ttaagcatagaagatgtagttaaatgTCATCTC---------TTCATTTATACACAACAATTGAAAGTCTGTGACATAGAGATCATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATACTATTATCATT-----TCATACTAGATTATCTATCCTGATAGAAAATTAGAAAAGAGAAACTACAGAAAAAGTATAGAATAGA
s HiC_scaffold_1 131242752 525 + 233722169 AGTGCTAATCTATATTCTT------AAGAAGAAGTGTTGTCTGGTGATGTGATTTAATtagcagttttcttt-tctttccatacaATTTGGCACCAAGTATCCTGAGGACAGAGATTGTGTCTGGG----TTGACTCTGGTCTCCTGTCCCTGGCACAGTATTCTCAGAGCAGGAGTTCAAG---AGAAGGTGCA--CAGCTGTCAACCCAGAGATTAACGCCTTCTTACACAAAgcctaaaa---tgt---ataaaaatatttta--acctgTTTGGTTGCTCATCTGTGTCACTGCTGGATCTGCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAACATTTTTCAG-GCACAGTTAGCACTGTAGGTCACAC-AGATCAATGAGCA-AACAGACAAAtacagagaacagaaagaaaaaaacacgtAGAGTAGA

a score=6119
s chr3           144873386 210 + 160039680 TCATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCC-----------GATGGTCCCAAGGCAATGAAATGAACTATGGCCCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCGCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTCGTATCCTCCATTTTTAAATACCTGCAAGCATAATTCAGAATA
s HiC_scaffold_1 131297770 207 + 233722169 TCATCCCTCACCTGTCA-----------TTTGAGAcagctgctccagctctgcagctgcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCCATCTGTTGGATACTTT---TTCTTGATCACCTAAGGACATGATTCAGGACA

a score=10418
s chr3           144874182 573 + 160039680 CTGTGTGTTTTTTTCTAGCACCTCTTAAGATTAGTTATGCTAAAATCAAGAGGCAAGTAAGAACAGTAGAATTGTACTT-----TGTCCTAAAAACAAAACTAAGATCAAAATACA------TGTGCAGTGGGATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAA--AAAATGAGTGGTTTTCAACTGGAAGATGAGAGAAGAACTGGACAGCTGTTAATTTGTACTATGGAAGAAAGCAATTATAATC-TTAACTGGCAAATTAATAAGTGTGGTTATAGGTAACATGGGGCACATGAAGAAGTTCATAGCTTTCTATTTGAGGT-GTTCCCAATGGCTTAGTAACCAAGTTAAAGGTGGG
s HiC_scaffold_1 131032498 554 + 233722169 ctatatgtGCCTGTccatgtgcttttaaaaatattt----taaaatgcaga---aagtaTTTGCAGTAGCAATTAACATAGAAATGTCct-----taaaattaaga--aagataGACTATTTTTTGCAGAACAATTTTTACCTGAAGAGCAGATTCGATTCCAGAGCAGATAGAAATTCCTCCTGAAGCTTCTGTAGGTAAGCTCTCTAgaagttttcttctttcattgtAGCTAGTTACTTGGACTAGCTTACTTTTGATGTGAGCGGTACTATCATAAGCAACTATTCCCACCCAGGAACCATTTTCAACAGTTTGAAGCAGGAAAATTTTAGCTGCTTGGTTCATTCGATTTAGCCGGTTTAAATCCTAAATGGTGAATCACAAGAAAACAGACCAAATAGTTTT-GCCTGAAGGGT-------------AACAGCAGATCATATAAAGTATGGCAAGACTTTGGTATAAACAGTAATT---AAAGGAAACAATGT-ATTATGGAGCACACATAGTTTAGCAAGGAGCTCATG--CTTTTATTAACGGTAACTCTTGGCTGCTAAGTACCCAAATTAGTGATAGG

a score=7383
s chr3           144874267 296 + 160039680 AAAAACAAAACTAAGAT---CAAAATACATGTGCAGTGGGATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAAA
s HiC_scaffold_1 131300571 299 + 233722169 AAAAACATGGCAAACACTGGCAAACCACAATAGCAGAGCATATCTCACAGTAAATGCTGATTGAAGGCCGGAGCAGATGGATGTCCCTCCTGAAGAAACTGTTGGTAAGTGTTTGGTGAGTGCATCTCTGTCTGCATCACTCTTTATCTGGACAAGTTCACTTCGTACTTGGGCGCTACCGTCAAATGTTACCAGCCCAACCCAGGACCTGTCCTCCACCGTCTGCAGCAGGAAAAACTTGGCCGCTTGATTCATGCGGTCAAGGCGGTTATCACTCTGGATGgacaagcaaaagaaaa

a score=10080
s chr3           144874303 288 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAAAAAATGAGTGGTTTTCAACTGGAAGATGA
s HiC_scaffold_1 131156833 288 + 233722169 GACTTTTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGTATCTCTTTCGCTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATTCGAGTGAGGCGTTTATCAAGctgaataaaaagcaaaagaaaacaaccaattaATTTTCGGTTGGAAGGtaa

a score=11279
s chr3           144874303 477 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAAAAAATGAGTGGTTTTCAACTGGAAGATGAGAGAAGAAC------------TGGACAGCTGTTAATTTG-----------------TACTATGGAAGAAAGCAATTATAATCTT-----AACTGGCAA-ATTAATAAGTGTGGTTATAGGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTATTTGAGGTG-TTCCCAATGGCTTAGTAACCAAGTTA-----------AAGGTGGGGCTTGGGTTGAAG------GCAATGATTCAC
s HiC_scaffold_1 131118545 528 + 233722169 GATTTTCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTTTTTCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCGGctatca---------aaaagcaaaagaaaacaaccaagtAGTTTTCAACTGGAAGATAATAGCATCACACATAATGAGTATATACATTTACCAATAAGAATTTTTCAATAATAACTACTATGACTGATaaaaattgttctcttttttcaacTGATAATGTTGAAAAATATGACTGT--GTATTATGGGACACGCATGGTTTAGTaaggagtttatatttttaaactagaGATGATTACTGGCTGCTAAATACTGCAGTTAGAGATTGAAGGAAGATGGAGATTGAGTTAAAAATGTGCATGATGATTCAC

a score=12128
s chr3           144874303 291 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAA-AAAATGAGTGGTTTTCAACTGGAAGATGAGAG
s HiC_scaffold_1 131081410 292 + 233722169 GATTTTTACCTCAAATGCTTTTTCAATCCCAAGGCAGATGGAAGTTCCTCCGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCACTGTTGCTTCTTATTTGTATTAGCTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATCCCTACCCAGGACCCATTTTCCACAATCTGCTGCAGGAAAAGTTTTGCTGCTTGATTCATTCGATTCAGCCGGTCACTGCCctgaatgaaaaagtaaaagaaacccACTAAGTAGTTTTGAACTTGAAGATAATAG

a score=12710
s chr3           144874303 291 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAAAAAATGAGTGGTTTTCAACTGGAAGATGAGAG
s HiC_scaffold_1 131194398 291 + 233722169 GATTTTCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATTCGAATGAGGCGGCTACCAGCCTGAATGAAAAGCGAAAGAAAACAACCAAGTAGTTTTCAACTGGAAGATAACAG

a score=12442
s chr3           144874304 290 + 160039680 ATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATCAGCACTTGTAGGTAAAGTTTGCAAGAGCTGGTTTCTCTCGATGTTACTGTTCATTTGGATCAGCTCACTCTTAATATTGGCCAGGTGATTAAAGTGTACCATCCCTACCCAAGACCTATTTTCAATTATCTGGCTTAGAAAGTGTTTTGCTGCTCGGTTCATTAGATCAAGGCGATCATAAGACTGAGTGAAAAATGATAAGAAAAAAATGAGTGGTTTTCAACTGGAAGATGAGAG
s HiC_scaffold_1 131244753 290 + 233722169 ATTTTCACCTCAAATGCTTTTGCAATCCCACTGCAGATGGAAGTTCCTCCGTTAGCATATGTAGGCAAGCTCTTCACTAGGGTGTCTCTTTCAGTATTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAATTTTGCTGCTTGATTCATTCGAGTGAGGCGGCTACCAGCCTGAATGAAAAGCGAAAGAAAACAACCAAGTAGTTTTCAACTGGAAGATAACAG

a score=26574
s chr3           144876333 1680 + 160039680 CAAACAAAAAGAGCTAATGAACTTACAGCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGGGGCGTCTCCATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAAGTGTAGAA----AATTTTTATT---TCACGTATTAAAAAAACGACCTGGAAAAC---AAAGCAAAAGTATGTCCAGTGTTAGAAATTAAaagtaattatgctggcctagcaaagtaactgtagttgatactttgctatggATGTATGTAACAATAGCTATCAAAGAAAAAGCAGTTGTTGAGAGTGGGGGCAGGGGCATGGGAGTGGTCTGAAGGAGGCTGTCTGGGAGGGTTCAACTTTAATTAAA-AACATGTTTTGTTTTTAAATTAAAGGAGAATATGTATTGTATTTAGCAAATATGGATGTTCAAGTAAAGTCCTATTAACAGTAAAGTAGACTTATAATTATAATAACAATAATTATCTAGCTATTAAAAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttactgggtgtcagccaatgttcaatggactctacattaacatatttaatcctcaTGTCATGC----------TTAACATCCATTATAT-------------------CTCTG-GTAGAACGCTTGCCTAGCAATGTGTAGTTTCTTACTCATATTTCCACCACCACCACCACCAGCATCATCATTATGattatttaaattaataatattaGACAAATCTTTTGATTATAGATTTTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCCGTGGAGCACCTGAAAATA--TGGAAGTGAGTCTAAGAGACAACTTAGTCATTCCT-TTGAA---------AAGTGGACCTGTTCCCACTGAGCTGTGTGGCACGGTATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGCCAATCAAAGTAACCATTTGTTTTTCATGAAACTGTAATGaaacaaaacaaaacaaaacaaaacCCCTaaaaaaatccaaaaaaataaaataaaaattaaaaaaaaaaacaaaGTGGTATCTCCAGTCACACACAGTGGGGCTCCAGTCACATACAGTGGGGCTCCAGTCACACACAATGGGGCTCTCCACTGGGATGAAAGCTGTGGGTGGGTCTTTCCCTTAGACCTTCCTGCAGCTGGCCTTG----GACCAACTCTCTGTAGGCGCCTGGTTGACAGAACCAGTGGGACAATTATTCTTGATGTGCAGTGCGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGACTAATCAAGGAGCATCATTTTATCCAGAGGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG---------TGTGCTGTTCCATGGGA
s HiC_scaffold_1 131199238 1369 + 233722169 CAGAAAAAATGGGCCCA---ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaa---tagaaaagtaatttttattatacCATACATTAAAATACTTACTTGTAAACCTCAAAAGCTAAACTATGTCC----------------TGCAAATATG----------------------------------------------------------------------------------------------------------------------------------------CTTTAATTGAATGAAATGT----------AATTAATGG-GAATCAGTGTTATACT------------------AAATGAAAC-------ATAGCAAA------------------------------------------------ATGGTAATAGTAGGCAACATTAGTCAAGTGCTTACAATATTTCATACAGTGACTGAAGaattttata-taatacatttaatCTTCCTGTGATCCagatacaaattttaaatcaGATATGTTGGGGAAGAGGGTGTAACACTATGAACACAATACATGCCTAGC-ATATGCAA-----GACTGTGGGTTCAGTCACCAGCaccac------aataaaagaaaataatcaattaaataaaatcagatatGGCCTTTGATTATAAATCTCAGGAGCCAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTCTAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCTGAAAATACGTGACAGTTATTCTTTGAGGCAACTTAGTCATTATTACTTAATAAAATCTTAAGTGTTTCTATTCTTGATGATGTTTATAGCAAGGAGTTTCATTTGTG---------------------TGTT---------------CCACTTGTTCCCTATGCA--Cgtaatgaa-----------------------ttttaagagttccAGTAAAAGCAA---------------------------TTTTTTATAGTAAAAGGCTGTGA---TTTAGAAACATTTAAATGG--------CATATATGACAGAGTTCTCAGAAGTAATGGAACCTGC---CAGGCCCTT-GTTTACATCTGTCTCCTGCTGGCCTTATGTTGGTGAATGCTCTGTAGGCAGCTTGATGTGGGAACTTGGGAAAACATT-TTCTCTAGGTACTACATTATCTTGTTTTCTGTATG---CTTCTCCAAATGTGATAAGGTG---------GAGTTTTGATTATTCAAGGGCTTTC---TTATCTAAAAGA-AATGTGGCTGGAAGCAGATTGTGAGATGCTGTCATAAGGGACAGTAGAATAAAGAGTGGTGGAGGCATTATAAATGTGC--TTCCATGAAA

a score=27407
s chr3           144876333 1680 + 160039680 CAAACAAAAAGAGCTAATGAACTTACAGCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGGGGCGTCTCCATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAA-AGTGTAGAAAATTTT--TATTTCACGTATTAAAAAAACGACCTGGAAAACAAAGCA---AAAGTATGTCCAGTGTTAGAAATTAAaagtaattatgctggcctagcaaagtaactgtagttgatactttgctatggATGTATGTAACAATAGCTATCAAAGAAAAAGCAGTTGTTGAGAGTGGGGGCAGGGGCATGGGAGTGGTCTGAAGGAGGCTGTCTGGGAGGGTTCAACTTTAATTAAAAACATGTTTTGTTTTTAAATTAAAGGAGAATATGTATTGTATTTAGCAAATATGGATGTTCAAGTAAAGTCCTATTAACAGTAAAGTAGACTTATAATTATAATAACAATAATTATCTAGCTATTAAAAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttactgggtgtcagccaatgttcaatggactctacattaacatatttaatcctcaTGTCATGC-----------TTAACATCCATTATATCTCTGGTAGAACGCTTGCCTAGCAATGTG----TAGTTTCTTACTCATATTTCCACCACCA------CCACCACCAGCATCATCATTATGattatttaaattaataatattaGACAAATCTTTTGATTATAGATTTTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCCGTGGAGCACCTGAAAATA--TGGAAGTGAGTCTAAGAGACAACTTAGTCATTCCTTTGAA------AAGTGGACCTGTTCCCACTGAGCTGTGTGGCACGGTATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGCCAATCAAAGTAACCATTTGTTTTTCATGAAACTGTAATGaaacaaaacaaaacaaaacaaaacCCCTaaaaaaatccaaaaaaataaaataaaaattaaaaaaaaaaacaaaGTGGTATCTCCAGTCACACACAGTGGGGCTCCAGTCACATACAGTGGGGCTCCAGTCACACACAATGGGGCTCTCCACTGGGATGAAAGCTGTGGGTGGGTCTTTCCCTTAGACCTTCCTGCAGCTGGCCTTG----GACCAACTCTCTGTAGGCGCCTGGTTGACAGAACCAGTGGGACAATTATTCTTGATGTGCAGTGCGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGACTAATCAAGGAGCATCATTTTATCCAGAGGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG---------TGTGCTGTTCCATGGGA
s HiC_scaffold_1 131249587 1368 + 233722169 CAGAAAAAATGGGCCCA---ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGttagaaatagaaaagtaaattttagtATACCATACACTAAAATACTTAATTGTAAACCAGAAAACTTAAACTATGTCCTGC-----AAAT----------------------------------------ATGCTTTA------------------------ATtgaatgaaatataattaatGGGAATCAGTG-----------------------------------------------------------------------TTATACTAAAGGAAA------------CATAGCAAA-----------------------------------------------------------------------------------ATGGTAATAGTAGGCAACATTAGTCAAGTGCCTACAATGTCTCAGACAGTGACTGaagaattttatattaatagaTTTAATGTTCCTGTGATCCAGATACAAATTTTCAAATCAGTCACGT---TGGAGAAGAGGGTG--TAACACTATGAGCACAATATATAACTAGCATGTGCAAGACTGTGGTTTCAGTCACCAGCAccacaataaaagaaaatcaattcaaTAAAATCAGATGTGGCCTTTGATTATAAATTGCAGGAGCAAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTCTAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCTGAAAATACGTGGCAGTTATTCTTTGAGGCAacttagtaatatttttaaaaatcttaagtgGTTCTATTCTTGATGATGTTTATAGCAAGAAGTTTCATTTGTG---------------------tgtt---------------ccatttgtttcctat------------acACATAACGAA-------------TTTTAAGAGTTCCAGTAAAAGCA------------------------------ATTTTTTATAGTACA----AGAGCTTGATTTAGAAACATTTAAAT----GGCATACATGACAGAGTTCTCAGAAGTAATGGAACCTGC---CAGGCCCTT-GTTTACATCTGTCTCCTGCTGGCCTTATGTTGGTGAATGCACTGCAGGCAGCTTGATGTGGGAACTTGTGAAAACATT-TTCTCTAGGTACCACATTATCTTGTTCTCTGTAGG---CTTCTCCAAATGTGATGAAGTGGAGCTACAAGTGTTTTGGTTATTCAAGGACTTTC---TTATCTAA-----AATGTGGCTAGAAGCAGATTGTGAGATGCTGTCACAAGGGACAGTAGAATAAAGAATGGTGGAGGCATTATAAATGTGC--TTCCATGAAA

a score=32907
s chr3           144876333 1767 + 160039680 CAAACAAAAAGAGCTAATGAACTTACAGCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGGGGCGTCTCCATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAAGTGTAGAAAATTTTTATTTCACGTATTAAAAAAACGACCTGGAAAACAAAGCAAAAGTATGTCCAGTGTTAGAAATTAAaagtaattatgctggcctagcaaagtaactgtagttgatactttgctatggATGTATGTAACAATAGCTATCAAAGAAAAAGCAGTTGTTGAGAGTGGGGGCAGGGGCATGGGAGTGGTCTGAAGGAGGCTGTCTGGGAGGGTTCAACTTTAATTAA---AAACATGTTTTGTTTTTAAATTAAAGGAGAATATGTATTGTATTTAGCAAATATGGATGTTCAAGTAAAGTCCTATTAACAGTAAAGTAGACTTATAATTATAATAACAATAATTATCTAGCTATTAAAAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttactgggtgtcagccaatgttcaatggactctacattaacatatttaatcctcaTGTCAT-----------GCTTAACATCCATTATA---------------------TCTCTGGTAGAACGCTTGCCTAGCAATGTGTAGTTTCTTACTCATATTTCCACCACCACCACCACCAGCATCATCATTATGattatttaaattaataatattaGACAAATCTTTTGATTATAGATTTTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCCGTGGAGCACCTGAAAATATGGAAGTGAGTCTAAGAGACAAC---TTAGTCATT----CCTTTGAAAAGT--GGACCTGTTCCCACTGAGCTG-TGTGGCACGGTATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGC---------------CAATCAAAGTAACCATTTGTTTTTCATGAAACTGTAATGaaacaaaacaaaacaaaacaaaacCCCTaaaaaaatccaaaaaaataaaataaaaattaaaaaaaaaaacaaaGTGGTATCTCCAGTCACACACAGTGGGGCTCCAGTCACATACAGTGGGGCTCCAGTCACACACAATGGGGCTCTCCACTGGGATGAAAGCTGTGGGTGGGTCTTTCCCTTAGACCTTCCTGCAGCTGGCCTTGGAC---CAACTCTCTGTAGGCGCCTGGTTGACAGAACC-AGTGGGACAATTATTCTTGATGTGCAGTGCGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGACTAATCAAGGAGCATCATTTTATCCAGAGGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG-----------TGTGCTGTTCCATGGGAGA---GTCATAGCCGGCAGTGATCAGAACAGATACACCAGACTTTAGCCACAGCTCA---TCCCATTGGCTTGCAGTTCAAA-TCAGTAAGTGA
s HiC_scaffold_1 131160930 1455 + 233722169 CAGAAAAATAGGCCTACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGGTAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaaaca----tcattttgC-----------------TGCAAACCa--------------------ccatatattaaaaa------------------aaactaactaTAA-----------------------------------------------------------------------------------ACCTGA--------------------TCAATTTAAATTATTCTACATATATTCTTTTCTTGGgtgaaa-------------tataattaaca------------caa----------aTCAGCATTAACGTTGGCT---GACCATAATAACAAGAG---------------------ATGATATTA-------------GCTGAATGCTTATTGTATGCCAATCAATAATTAACAAATTCTATATCAATGTATTTAATCCTCATGTCATCTGGATGCATATTTCAAAATCAGGTAAAGTGGGGCTAGAGGTGTAACACTTTCGAGTAGCGTgcatgcctagca-tgtgcaaagtccTG-----GATTAAATCACTAgcacca-------------taaaataaaataaacaaataaaatcagataTATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACATACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTGAAAATATG----------TGACAGTTAACTTTTTAGTCCttagtgcttttaaaaaatcataaattgttCTCTTGATGATACTTTaccaaagtttttcttttat-gtgttcaTGTATTTCCCATGCTGATAGCAAAGTTTAAGAGTTGCAATCAAAGTAATTATCTATTTTTCAAGAAAGTATAATG--------------------------------------------------TAGACATTTAGTTAAAA------------------------------------------------------TCTATAGATATACATGACTGAGTTTGCTGGTGGGGTTAAAGAT----GCTATTCTCTTGCTTAGACATCTCTCCTGCTGAACTTATACTGGTGAATCACTGCAAGCACCTGGATGAGGAAACCTAGGGATCCATTTACTCTGGGTA-GCACCTTAGCTTGAAGTTTGCCATAGACTTCTTTCCAAAGAGATATC-----------TGTGTTTTGcttactca---------tttttattaaaaaggaaatgtgacTGTAAGCAAAGAGTGAAGTTCTATAAAAAATGAC-GTAGAATAAAGAATGATAGAGGCATTTCAGAAATGAATTATATTACCCAAAATTGGTAATAGGGGGTAGAGATTAGAGCAGATATGTTGGGATGTGGCTATATCTCATTTTTCCATTGGTTTCCAGTTCAAATTCAGAAAGTGA

a score=30116
s chr3           144876333 1767 + 160039680 CAAACAAAAAGAGCTAATGAACTTACAGCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGGGGCGTCTCCATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAAGTGTAGAAAATTTTTATTTCACGTATTAAAAAAACGACCTGGAAAACAAAGCAAAAGTATGTCCAGTGTTAGAAATTAAaagtaattatgctggcctagcaaagtaactgtagttgatactttgctatggATGTATGTAACAATAGCTATCAAAGAAAAAGCAGTTGTTGAGAGTGGGGGCAGGGGCATGGGAGTGGTCTGAAGGAGGCTGTCTGGGAGGGTTCAACTTTAATTAA---AAACATGTTTTGTTTTTAAATTAAAGGAGAATATGTATTGTATTTAGCAAATATGGATGTTCAAGTAAAGTCCTATTAACAGTAAAGTAGACTTATAATTATAATAACAATAATTATCTAGCTATTAAAAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttactgggtgtcagccaatgttcaatggactctacattaacatatttaatcctcaTGTCATGCTTAACATCCATTATA--------------------------------TCTCTGGTAGAACGCTTGCCTAGCAATGTGTAGTTTCTT--ACTCATATTTCCACCACCACCACCACCAGCATCATCATTATGattatttaaattaataatattaGACAAATCTTTTGATTATAGATTTTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCCGTGGAGCACCTGAAAATATGGAAGTGAGTCTAAGAGACAAC---TTAGTCATT----CCTTTGAAAAGT--GGACCTGTTCCCACTGAGCTG----TGTGGCACGGTATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGC---------------CAATCAAAGTAACCATTTGTTTTTCATGAAACTGTAATGaaacaaaacaaaacaaaacaaaacCCCTaaaaaaatccaaaaaaataaaataaaaattaaaaaaaaaaacaaaGTGGTATCTCCAGTCACACACAGTGGGGCTCCAGTCACATACAGTGGGGCTC--CAGTCACACACAATGGGGCTCTCCACTGGGATGAAAGCTGTGGGTGGGTCTTTCCCTTAGACCTTCCTGCAGCTGGCCTTGGAC---CAACTCTCTGTAGGCGCCTGGTTGACAGAACC-AGTGGGACAATTATTCTTGATGTGCAGTGCGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGACTAATCAAGGAGCATCATTTTATCCAGAGGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATGTGTGCTGTTCCATGGGAGAG--TCATAGCC---------------GGCAGTGATCAGAACAGATACACCAGACTTTAGCCACAGCTCA---TCCCATTGGCTTGCAGTTCAAATCAGTAAGTGA
s HiC_scaffold_1 131085598 1445 + 233722169 CAGAAAAATAGGCCCACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaaaca----tcattttgC-------------------------------------TGCACACCaccatatattaaaaa------------------aaagtaactataA-----------------------------------------------------------------------------------ACCTga--------------------tcaatttaaactattctacatatattcttttcttgggtgaaa-------------tataattaaca------------caa----------aTCAGCATTAACGTTGGCT---GACCGTAATAACAAGAGATGT----------------------------------TATGAGTTGAGTGCTTATTGTATGCCAATCAATAATTAACAAATTCTATATCACTGTAATTAATCC-CATGTCAT-CtggatacatattttaaaatcaggtaaaGTGAGGCTAGAGGGTAACACTTTCGAGTAGCGTgcatgcctagca-tgtgcaaagtcTTGGATTAAT-----------------CACTAGcaccataa----aatgaaataaaccaataaaatcagATATATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACATACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTGAAAATATG----------TGACAGTTAACTTTTTAGTCCttagtgcttttaaaaaatcataaattgttCTCTTCATGATGATATTTTACCAGTGTTTCTTCTATGTG---TTCACGTACTTCCCATGCTGATAGCAAAGTTTAAGAGTTGCAATCAAAGCAATTACCTATTTTTCAAGAAAGTATAATGTAG----------------------------------------------------------------------------------------------------------ACATTTAGTTAGAATCGATAGACATATATGACTGAGTTTGCTGGTGGCGTTAAAGAT----GCTACTTTCTTGCTTAGACATCTCTCCTGCTGAACTTATACTGGTGAATCACTGCAAGCACCTGGATGAGGAAACCTAGGGGTCCGTTTACCCTGGGTG-GCACCTTAGCTTGAAGTTCGCCATAGACTTCTTTGCAAAGAGATATC-----------tgtgttttgcttattta---------tttttattcaaaaggaAATGTGACTGTAAGCAAAGAGTGAACTTCTATAAAAAATGAC-GTAGAATAAAGAATGATAGA-----GTCATTTCAGAAATGAATTTTATTACCCAGAATTGGTAACGGGGTAGAGATTATAGCAAATATGTTGGGTTGTGGCTATATCTCATTTTTCCAATGGTTTCCAGTTCAGA-----AAGTGA

a score=10809
s chr3           144876348 249 + 160039680 AATGAACTTACAGCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGGGGCGTCTCCATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGT-AGTAAAGTG
s HiC_scaffold_1 131301483 250 + 233722169 AGTGAACATACCGCCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGGTTTGTTGTCATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAATTGTCAATGAAATG

a score=19857
s chr3           144876353 1101 + 160039680 ACTTACAGCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGGGGCGTCTCCATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAG--TAAAGTG-TAGAAAATTTT-----TATTTCACGTATTAAAAAAACGACCTGGAAAACAAAGCAAAAGTATGTCCAGTGTTAGAAATTAAaagtaattatgctggcctagcaaagtaactgtagttgatactttgctatggATGTATGTAACAATAGCTATCAAAGAAAAAGCAGTTGTTGAGAGTGGGGGCAGGGGCATGGGAGTGGTCTGAAGGAGGCTGTCTGGGAGGGTTCAACTTTAATTAAAAACATGTTTTGTTTTTAAATTAAAGGAGAATATGTATTGTATTTAGCAAATATGGATGTTCAAGTAAAGTCCTATTAACAGTAAAGTAGACTT---ATAATTATAATAACAATAATTATCTAGCTATTAAAAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttactgggtgtcagccaatgttcaatggactctacattaacatatttaatcctcaTGTCATGCTTAACATCCATTATATCTCTGGTAGAACGCTTGCCTAGCAATGTGTAGTTTCTTA--CTCATATTTCCACCACCACCACCACCAGCATCATCATTATGattatttaaattaataatattaGACAAATCTTTTGATTATAGATTTTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCCGTGGAGCACCTGAAAATA--TGGAAGTGAGTCTAAGAGACAACTTAGTCATTCCTTTGAAAA
s HiC_scaffold_1 131034836  782 + 233722169 ACTTACCTTCATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGGTGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAAGGTTAATatgataaaagattttaaaattatcttgtcCATTTAAAAATCTATCTGTAAACC----------------------------------------------------------------------------------------TGAAAGAATAGCAAT--------------TTATT---------------------------------------CTGT------------AATTTTA--------------TTGTTTATCGAATAGA-------------------------ATATGATTATTCAATTAA-----TAGTAG-AGTAAGGTACATTTTCAATAATtctgataataataat-----agctat--------------------------------------acTGACTGGTTA------------CTATTGGCTCCCAGTTAATacattaaa-----------------aaactttttttattaatagtaaca----------------------tttttaatCTCAGGTTTCC----------------------------TAAGTAGATATGTTAAAAACAT--------------GATTACAAATTCTGAAAACAAAGATTGGCATACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTCTAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCTGAAAATATGTGACAGTTAATCATTGAGGCAACttaatcattaatttaaaaa

a score=6029
s chr3           144876360 236 + 160039680 GCCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAG-GGAGAAGAAGGGTGGAGCCGGGGGC---GTCTC---CATGGGCATGCTGTTGTTAAAATCCTCAGACCTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTCATATTATGTAAAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAAGT
s HiC_scaffold_1 131343060 242 + 233722169 GCCATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCC-ATCCTGGACAACAGAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGGGATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAAAAAGAGCAGAGT

a score=6897
s chr3           144877197 209 + 160039680 TTTTGGACACAGTGACTGGTA--TACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGG---ACTCTATTCATACCCGTGATACCCGTGGAGCACCTG
s HiC_scaffold_1 130991877 213 + 233722169 TTGTGAGCATAG-AACTGGAAGGCACTTACTGAATCGAGGCTTTGCATGAACATTATCGAGTCTCTTGCGGTCTGGGATTTGTCTGGGATAAATGTGCATTTTGCTTCGTAAAGTCCTGTCTTGGAGTCACGTCTACACGGCCTTGTTATACAGCTGCCTCCCTTGCATTCATTGAAAACCACATTCATACCAGTAATGTGAGTGGAGCATCTG

a score=5549
s chr3           144877218 228 + 160039680 TACTTACAGAATCGATACTTTCCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCAACTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCCGTGGAGCACCTGAAAA----TATGGAAGTGAGTCTAAGAGACAACTTAGTCATTCC
s HiC_scaffold_1 131304199 229 + 233722169 taCTTACAGACTCAATACTTTGTGCAAACATTATGGAAGCCTTTGCAATCTGTTGCTTCTGTGGTATCAGCACACATTCTTTATTATACAGTCCTGTTAATTTGTTGAGTCTGCATGGTCCAACTGTACAACTGCCTCCCTGGCACTTAATTGTTTTATATTGTCCGGTAATATCTGTTGAACATCTGAAAAGAGTTATGGTTAGATGTTT---AGACAATGTAATCATTTC

a score=9774
s chr3           144878102 428 + 160039680 TCTTAATGAGTTCTGGCAGGTATGGGAGAGATGTGTAAATAAAAAGTG--TCAAAATGCCAAACAAGTGATTCGCATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAAGAAAATGCCCTAAAATAAGCATAAAATAGGCTTGTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATT-GAAAGGACT-----ATAGAACAGTTAAA------AGCCAGAGGTCATTTAAAGGTACTCAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGAT---GAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTAT---AAGACATTTTTCAAATACATAAT--------CATAATATAATTGCTAAATATTGCA
s HiC_scaffold_1 131037135 416 + 233722169 TCTAAATGACTTTTGGCAGCCA----AAAAACCAgaacatgaaaaatacatttaattgtcTGCCAAATGCTC----TTGAAGTTATGTGTATCTT-----AAGGAGacaatgtattt--------tttcttaaaa-------aatatttttttgtgacATGGAGTCTGTTATCTccactggaataaaa-ataaattatcatcatttgaaaggagtcagaggaagaaaaataagaccTGTTacacagtgatcttttaaaaaaatttag--------tcatGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAG---GGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGAGAAGACTTaattcaaaggacaaaatttatcTGTTAAATATTTCA

a score=9915
s chr3           144878106 441 + 160039680 AATGAGTTCTGGCAGGTATGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCGCATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAAGAAAATGCCCTAAAATAAGCATAAAATAGGCTT--GTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATT------GAAAGGACTATAGAACAGTTAAAAGCCAGAGGTCAT-TTAAAGGTACTCAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTAT---AAGACATTTTTCAAATACATAATCATAATATAATTGCTAAATATTGCATCTCAAAAATTCCCAgg
s HiC_scaffold_1 131087928 409 + 233722169 AGTGAGTTC-----AATATAGCAGGCAGGT----ACAGGATGTGTCAAATTGCCAAAAAAAT--TTGCCATTGATATtatgtgcattta-aaataaacagcCATGCACTTTaagacaatt----ttgaaaaaaagtaaaaccagtTTTTGTGATATTGCATCTACCATCTGCTTTGGGG------ATAAGTGATTATCATTCATAATAACAGGTTAATAAAA----TGAAAGCCTGATGTTATGTTAAGAAAATGTAAGTA----GCCTTGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaaacattt----------caaacatgataaaatttctcaaaa----atcttaAGATGTTTCAGG

a score=10513
s chr3           144878106 405 + 160039680 AATGAGTTCTGGCAGGTATGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCGCATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAAGAAAATGCCCTAAAATAAGCATAAAATAGGCTT--GTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATT------GAAAGGACTATAGAACAGTTAAAAGCCAGAGGTCAT-TTAAAGGTACTCAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTATAAG-ACATTTTTCAAATACATAATCATAAT
s HiC_scaffold_1 131163167 390 + 233722169 AGTGAGTTC-----AATATAGCAGGCAGGT----ATAGGATGTGTCAAATTGCCAGA-AAACATTTGCCAGTGAAGTtatgtgcatttt-aaataaacaaccatgtactttaagaaaaaattcctaaaaaag---TAAAACCAGTTTTTGTGATATTGCATCTACCATCTGCTTTGGGACTGG---TAAGTGATTATCATTCATAATAACAGGTTAATGAAA----TGAAAGCCTGATGTTACGTTAAGAAAATGTAAGTA----GCCTTGCCTTGTGGCTTCAAGTTTATTTAACTCGCTCCTGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaacatttcaaacatgTGATAAAAAT

a score=14299
s chr3           144878106 435 + 160039680 AATGAGTTCTGGCAGGTATGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCGCATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAAGAAAATGCCCTAAAATAAGCATAAAATAGGCTTGTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCAT--------------TGAAAGGACTATAGAA-CAGTTAAAAGCCAGAGGTCATTTAAAGGTACTCAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTATAAG-ACATTTTTCAAATACATAATCATAATATAATTGCTAAATATTGCATCTCAAAAATT
s HiC_scaffold_1 131251600 435 + 233722169 AGTGATTTCTGTCAGCTATGTGTCATATGTG------AAATATGTCAAATTGTCAA-CAAATGCTTCCCACTGcagttatgtatattttaaatggaaaactaGCTGCATTAagataaaatttctagaaaaatg---agAGCAATTTTGTGATATTGCATCTATCCTCTGCTTTGGGGCACAG-AGAAATGATTATCATCTATAATAAATCagtgtaaagagaataaaatcaattaaaagtcTGAGGTTATATAAGAAAATTTAAGCA----GTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAA-CAAAATTCAAGTGACAAGTTTCTTATCTGAAAAATT

a score=14012
s chr3           144878106 1082 + 160039680 AATGAGTTCTGGCAGGTATGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCGCATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAAGAAAATGCCCTAAAATAAGCATAAAATAGGCTTGTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATTGA--------------AAGGACTATAGAA-CAGTTAAAAGCCAGAGGTCATTTAAAGGTACTCAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTATAAG-ACATTTTTCAAATACATAATCATAATATAATTGCTAAATATTGCATCTCAAAAATTCCCAggctactgagatggttcagtgggtaaaaggtcatgccatcaaacctaacaaactgagttcagtccttgacccccatgagggaggggaaaagtactgattctcaagttgtcctctgcccaccatacCACCTCTGAagagagacggagagagaaagagagagagagagagagacagagaaaggaaagagagaggagatacaagagggagagagaggagagaaggagaaaagagagagaggggagataaaggcagtagagagagaTTACATTTGGGTTTAGGTTTT-CATAACTCTTAAAGTTTATAT-TTTGCTAATAAAAGGGCTT-TTATATTTAATGGTACTCATTGCTGTACCAT----------TTTTTATTCCACAG---CATGTCAAATCAATGAAACA-TTATGGAGCATATGCCACAGTCACAGTAAACTAGGATTTGATTTTCAgtacttggggagtcaaaggtctcacatttta-----gtttatggcttgccaagtaccaaacctgtcaacagcctaatcagatataca-gaactctgctgtatagatattttgagagtgaaactttagggagaaaaaaaaaaacggactaaaaatgctcctgaaaag--ttgatattaaaaaaagatatagatatgctATTGTCGATTATGGAGGTT
s HiC_scaffold_1 131201258  844 + 233722169 AGTGAGTTCTAGCAGCTATGGTAGGCAGGTGTTAA----ATGTGTCAAATTGTCAA-CAAATGCTTCCCACTGCAGTTATGTATATTTGAAATGGAAAACTAGCTGCATTAAGATAAACTTTCTAGAAAAATG---AGAGCAATTTTGTGATATTGCATCTATCCTCTGCTTTGGGGCACAGCG-AAATGATTGTCATTTATAGCAAATCagtgtaaagagaataaaatcaactAA--GTCTGAGGTTATCTAAGGAAATTTAAGCA----GTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttcaaacatgTAA-CAAAATTCAAGTGACAAGTTTCTTATCTGAAAAATTTGAAGAT------GATCTTTCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAAAGG--------------------------------------------------------------ATTTGCATTTAGGTTTTCCATCACCCCTGATATTTATATATCTGTTTATAAAAGAACCTATTGcattaaataa----catatttttacCACATATATTATGTTTTTACTCCATGGGAACATATTGAATCAGTAAGTCATTTGTGGAATATAACCTATGAACAGAATGAACTAGGATTCCTCCTTCTATTCTAGAAGATAGAAAGGTCTTAGATATTACAATGGTTCATAGATCTCCAAACAAGAACCCTATCAGTTACATAATTTGATACACACTGATTCTATTGTTTTAAGAT-----GGATGGACCt-----------aggaaaaattttctaaaaatgttccTGACAAGGTTGGGAATGAAGCAAAAATTCAGAAACATTCTTGCAGATAATATAGGct

a score=5101
s chr3           144878338 184 + 160039680 CATTTAAAGGTACTCAGGGGTCATGCCATGCCTTGTTGCTTCGA---TTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTATAAG-ACATTTTTCAAATACATAATCATAATATAATTGCTAA
s HiC_scaffold_1 131308753 182 + 233722169 CAATTTAGAATAGTTTGAGAAGATGAAATACCTTACGGCTTGAGGTCTTCCCCTGGATAA------GTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACATTTCGGTTACCTGAGTAAAATAAGAATGGTAA

a score=6302
s chr3           144878365 121 + 160039680 ATGCCTTGTTGCTTCGAT---TTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTATAAGA
s HiC_scaffold_1 130994007 121 + 233722169 ATACCTTGTTGCTTCAATAGTGttctttctggaaaaa---taaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGA

a score=5818
s chr3           144878368 114 + 160039680 CCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCATTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTAT
s HiC_scaffold_1 131346675 114 + 233722169 ccttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGT

a score=27655
s chr3           144878677 1205 + 160039680 GAagagagacggagagagaaagagagagagagagagagacagagaaaggaaagagagaggagatacaagagggagagagag-gagagaaggagaaaagagagagaggggagataaaggcagtagagagagaTTACATTTGGGTTT----AGGTTTTC--------ATAACTCTTAAAGT--TTATATTTTGCTAATAAAAGGGCTTTTATATTT----AATGGTACTCATTGCTGTACCATTTTTTATTCCACAGCATGTCAAATCAATGA----AACATTATGGAGCATATGCCACAGTCACAGTAAACTAGGATTTGATTTTCAgta--cttggggagtcaaaggtctcacattttagtttatggcttgccaagta----------ccaaacctgtcaacagcctaatcagatatacagaactctgctgt--atagatattttgagag-----------------------tga--aactttagggagaaaaaaaaaaacggactaaaa---atgctc-ctgaaaagttgatatta------------aaaaaagatatagatatgctATTGTCGATTATGGAGGTTACGTCGGCTACTGAAT-CAAGAATTTGTTGATTTTGAGAAAA--------TTTAAATGACTTCG-----------AATAAGTACCT---Taaa----ttaagccacttgtt-aatgtcacaaagct-----aatagaggaatcaagatttggagccaagtgtttctgttccaaTCTGATTATT--TAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCTCCACCTGAATCTCCATATTCATCTTGTTTTCTTCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGAAA-AGACAG----TAGTAAGCAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCA--AGCACA-ACAAAATACATTTTTGTTGTTGTTAAAAGAAAA---ATTGATACTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAATAGATATGTAAAAATGAT--AATAAAAATGGAATCAAG
s HiC_scaffold_1 131040229 1228 + 233722169 ggagaaagagagagagagtgagtgtgtgtgtgagagagagagaaaaag-agagagagagaa------agagagagagagagagagagagagagaga-gagagagagagagaatgaatgctGGGG----------TATGTGAGTTCGTGAAAGTTTTCTTTGAATAGTGACATTTGAGTTGATCCTACTTTACCAATGA-------TTCAGATTTTTAAGATAATACACATT----------------------AGCTCCTTGAACAAATGATCTTAACATT---TAGAATttaataca-------tgaaata--------tttttaataggttCAAGTAATCA--GTTATCATATTTTCACTTATG--TAACCAAATGGTTTAAATGGTCATATCAG-CAACAGCCTA--CAAGTGTT----ACTTTGCAGTCTATAACTAGCGTCATGGCTCTTTCCATCTTTCTGCACATCTGATCAACTGTGGAAAGctagaaaatgaaaatctaaaacaTATGCTCTCAGAAAAGGTGATATTTCTGTAATCTGTTAGAATTCCCATAGATACTACAGTGTCTATT--------TACATGAGTGTCTGTTTACATAGGGTTGTCTGCTTTAAGATAAACACAAGGTAGAAACCACTGTGTTCCTGAGTTTGATGGGAACATGCATAAAAAGGGTAGCCTACTTGTTTAAGATCACACAGCCTGATAAGCAGAAGATTCAGGATTTAAACCTATGTACTTTGGCTGAAATGCATTTACTCTTAACTGGGAAGAGAGCTATTTGCTGCGAG-ATGAAATGTTTTAATCAAATTTCCTACCTGATGGTCcgtattcattttgtttctttcccagTACAAAGCCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGCCTGGTATAAGGTTCATCTTGGCCTGGGAGGGTTGGTGGTGCAATTATAATATCAGCCTGAGAGTGTTGGAAAAGATTGTGAAAACATCAGCATTGGACATGGACAGCATTTAGTCTGGAAAACTCTGAAATGATGA------GCTAAGGTTGGCATTAGCAGATGtagaaagcatttt-----------aaagaaaagtcatTGACACTTACATGTTGGTAGCTCTCATATTTTGGCCTCCTGtattgtgtgttttctttccaattcttaggaattaatatagacacatttttgaaaaaaaatctcttttctgtGGCTTCAAACAGGTAAGTAGATGCTGTTGTCACCATGTCCTATTATCAAAGGGAAACAG-TATGTGAAAACAATCAAGTGAGAATGGACTAAAG

a score=22452
s chr3           144879266 614 + 160039680 cttgttaatgt--cacaaagctaatagaggaa---tcaagatttggagccaagtgtttctgttcc---aaTCTGATTATTTAATA-GAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCTCCACCTGAATCTCCATATTCATCTTGTTTTCTTCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGAAAAGACAG----TAGTAAGCAAAACTCTGAATCAAT-----AACTGTGTAGCAAAGCTAGCAAGCACAACAAAATACATTTTTGTTGTTGTTAAAAGAAAAATTGATACTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAATAGATATGTAAAAAT---GATAATAAAAATGGAATCA
s HiC_scaffold_1 131090837 619 + 233722169 CTCCTCAATGTTGCACATAACTAATATACAGAAGGGCAAGAATTTGAGCCTAGGGTCTCTGGCTCCAGAGCCCGCTTATTTAATCTGGAAACACATTTGCTTGTTGAAAA--TTAGATATTTGGTGCAAATTTCCTACCTAATGGTCCATATTCAGCTTGTTTTTTTCCCAGAACAACATCAGGAGTCAAATGAATGTATTCTGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAGAAGAGCAGGAACCCATCAAGAGGAGAAATGGTGATGTTTACTGAGACTAACTCTGCAACAATCTATGGTCTAAGTATGAAGATT-----------CAGAATATATTCC--TTTCTGTTGGAGACGAATTTGAGACTTACATGTTTGTAGCTCTCGTATTTTGGCCTTGTGTATGCAGGATCTTCATTCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATAATCAAAGGGAAACAG-TATGTGAGGATTGGAAGAGTAAGAGTGGACTCA

a score=23071
s chr3           144879266 634 + 160039680 cttgttaatgt--cacaaagctaatagaggaa---tcaagatttggagccaagtgtttctgttcc---aaTCTGATTATTTAATA-GAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCTCCACCTGAATCTCCATATTCATCTTGTTTTCTTCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGAAAAGACAG----TAGTAAGCAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACAACAAAATACATTTTTGTTGTTGTTAAAAGAAAAATTGATACTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAATAGATATGTAAAAATG--ATAATAAAAATGGAATCAAGccttccggtctgcggcag
s HiC_scaffold_1 131166075 638 + 233722169 CTCCTCAATGTTGCACATAACTAATATACAGAAGGGCAAGAATTTGAGCCTAGGGTCTCTGGCTCCAGAGCCCGCTTATTTAATCTGGAAACACATTTGCTTGTTGAAAA--TTAGATATTTGGTGCAAATTTCCTACCTAATGGTCCATATTCATCTTGTTTTTTGCCCAGAACAACATCAGGAGTCAAATGAATGTATTCCGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAAAAGAGCACGAACCCATCAAGAGGAGAAATGGTGATGTTTAGTGAGACTAACTCTGCAACAATC----TATGGTCTAAGTATGAAGCTT--CAGAATATATTCC--TTTCCATTGGAAACAAATTTGACACTTACATGTTCGTAGCTCTCATATTTTGGCCTTGTGTATTCAGAATTTTTCTGCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATTATCAAAGGGAAACAG-TATGTGAGGATGGAAGAGTAAGCGTGGAGTCATGAACACTGCTTTATGTCAG

a score=22446
s chr3           144879277 601 + 160039680 cacaaagctaata----gaggaatcaagatttggagccaagtgtttctgt-tccaa--TCTGATTATTTAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCTCCACCTGAATCTCCATATTCATCTTGTTTTCTTCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGAAAAGACAGTAGTAAGCAAAA----CTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACAACAAAATACATTTTTGTTGTTGTTAAAAGAAAAATTGATACTTACATGCTTGTAACTCTCCCGTTTTGGCCT-TCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTG-AAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAATAGATATGTAAAAATGAT--AATAAAAATGGAAT
s HiC_scaffold_1 131121541 601 + 233722169 CACAAAACTGGTATGTAGAAGAGATAGGATTATAACCTGAG-GTCTCTGTATCCAAAGTCTTCTCACTTAATCTGGGTCAGATCTGCTTG--ATAAAAATTAGATA-TTTGACAAAATTTCCTACCTAATGGTccatattcattttcttttttgcccaGTACAAAGTCAGGGGTGAAatgaatatattctgctttttctcCACCTTCTGTGAACTGCCTTGTATAAGGTTCATCTCTGTCAGGGAGGCTCGGTGGTGCAACTATCACATCAGCCTGAGAGTGTTGGAAAAGGTTGTTAAGCATTG-GGaacatgaatgaaaatatttagttAAAATATATCTGAAACAAAAATTT----GCAAAGGTGG-GAGCAtcagaaa----atttccttttttgctaGAGAAGATTTTGGCACTTACATGTTTGTAGCTCTCATGTTCTGGCCTCCCTGTATTCAGGATTTGCTGCGCAAGTCTCAGGAATCAATATAGacacagttttgaaaaaaaaatcttttttctgtgGCTTCCAAGAGATAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAG-TATGTGAAAACAACCAAGTGAGAGTGGAAT

a score=23651
s chr3           144879277 572 + 160039680 cacaaagctaata----gaggaatcaagatttggagccaagtgtttctgt-tccaa--TCTGATTATTTAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCTCCACCTGAATCTCCATATTCATCTTGTTTTCTTCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGAAAAGACAGTAGT------AAGCAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACAACAAAATACATTTTTGTTGTTGTTAAAAGAAAAATTGATACTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAATAG
s HiC_scaffold_1 131205024 574 + 233722169 CACAAAACTGATATGCAGAAGAGATATGATT-ATAACCTGGGGTCTCTGTATCCAAAGTCTTCTCACTTAATCTGAGTCAGACCTGCTTGATAAAAATTAGACAT---TTGACAAAATTTCCTACCTGATGGTccatattcattttctttttttcccagtacaAAGTCAGGGGTGAAATGAATGTATTCTGCTTTTTTCCCACATTCTGTGAACTGTCTTGTATAAGGTTCATCTCTGTTGGGGAGGGTCGGTGGTGCCACTATCACATCAGCCTGAAGGTGTTGGAAAAGGTTGTTAA-ACATCGAGaacatgaatgaaaatatttacttaaagtGAA--TCTGAAACAATAAATCTGTGGCAAAACTTGAGAGTATCAGAAAAATTGTTTTT----TCGCTAGAGAAGATTTTGGCACTTACGTGTTTGTAGGTCTCATGTTTTGGCCTCCTGTATTCAGAATATGCTTTCCAAGTCTCAGGAATCAATATGGacacagttttgaaaaaaaatcttttttctgtgGCATCAAAGAGGTAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAG

a score=23600
s chr3           144879277 601 + 160039680 cacaaagctaata----gaggaatcaagatttggagccaagtgtttctgt-tccaa--TCTGATTATTTAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCTCCACCTGAATCTCCATATTCATCTTGTTTTCTTCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGAAAAGACA----GTAGTAAGCAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACAACAAAATACATTTTTGTTGTTGTTAAAAGAAAAATTGATACTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAATAGATATGTAAAAATGAT--AATAAAAATGGAAT
s HiC_scaffold_1 131255369 599 + 233722169 CACAAAACTGGTATGTAGAAGAGCTAGGATT-ATAACTTGGGGTCTCTGTATCCAAAGTCGTCTCACTTAATCTGGGTCAGACCTGCTTGATAAAAATTAGACAT---TTGACAAAATTTCTTACCTGATGGTccatattcattttcttttttgcccaGTACAAAATCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGTCTTGTATAAGGTTCATCTCTGTTGGGGAGGGTCGGTGGTGCCACTATCACATCAGCCTGAGGGTGTTGGAAAAGGTTGTTAA-ACATTGAGCgcagaaatgaaaatgtatagTCAGAATGAATCTGAAACAA-----ACCTTGAAAAACTTGGGAGCATCAGAAA----ATTTCCCTTTTTGCTAGAGAAGATTTTGGCACTTACGTGTTTGTAGCTCTCATGTTTTGGCCTCTTGTATTCAGGATTTGCATCCCAAGTCTCAGGAATCAATATAGatacagttttgaaaaaaaatcttttttctgtgGCTTCAAAGAGGTAAGTAGATGCTGTGGACACCATGTCCTGTTATCAAAGGGAAAAAG-TATGTGAAAACAACCAAGTGAGAGTGGAAT

a score=6797
s chr3           144879433 413 + 160039680 AAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCATGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAACGATCGTTAACACTTGAAGAACAGA----AAAGACAGTAGTAAGCAAA--------ACTCTGAA----------TCAATAACTGTGT--AGCAAAGCTAG----------CAAGCACA---ACAAAATACATTTTTGTTGTTGTTAAAAGAA----------AAATTGATA---------CTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTATTATAAAAGTGAAA
s HiC_scaffold_1 130994498 460 + 233722169 AAGCTTGGAGTAAAATGTATGTATTGTCCTTTATCTCCACATTGTCCATATTGAAGTGTGTAGGGATCACTGCTGTACGTAGGATGAGGATCAGCCACTATGACATCTGCCTAAACAGTAAaagaacaagca--aaca-----aaaacaaattgcaagagcaacagaaaacaaattgCAAGTGCTTTGAAGACAAGCACTTTTGAATCTGCATTAAGAAAAGTTAGATCACTGATTTAAATACAGGAATTAAAGAAAgttatattaacttttaaaaagcataggAAACAATTTAAGAGCTCAGTAGCCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCTG--ACAAAAGTAAAA

a score=5258
s chr3           144879683 150 + 160039680 CTTACATGCTTGTAACTCTCCCGTTTTGGCCTTCTGTAATGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTTCCTAT
s HiC_scaffold_1 131351600 147 + 233722169 CTTACCTTTTCATATGATTCTTGTTTTACTTTGCTGTAATTG---TTAGCTTTCCATGTGGCAGGTATCAATATCTGTATATTTCTGAAGAACACTCTTCTCTTGGTAGCATTGAAGAGGTAAAAAGAAGCTTCAGTTATCATTTCCTAT

a score=28639
s chr3           144887697 2310 + 160039680 TTGTGTATAA-GTAGATAATGGCAAGTCACAATAGTGGCTGATGATA-------GAGAATTTTGTAAAAGGCTAAGTGTCAAAACCTAC-TAAACTATAGGCATGTTGGCAAAGGA-----TTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTTTGTCTCTAATAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAGTTTGAAGCCAATCATTTATTCCTCTACACCAAGAATCCACCATTGAGAGTCTG--------------------GTCTTTGTATTCTATGGGAAAAATATGTTT-TGTCTTTTAGAGTTCAAAGGACACCAGGTAC--GACACCTCTGAGCTGATGGGTGGGTGATAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCAGAAGGAAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGTCCAGTGAGGACGACCCCAAACCAAGTACAAGAAGTTGT-GGATGTTGCTCCTGAGGACGTGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACA-----TGGAATGTTGGAGTTGGAAGAGACTTTAGCAACCTAAAGTCCTAGGATTAGT----GAGGGGGCCTCTCCCTCTGTTTG----------CAACCACTTGGTGGGCTCACACCCTCCACACAGTGATCGTCTCTAATTTTCATTTAAGTACACATTTTACATCTCCCCATGGATTCAGAGGTCTGTCTCT-tctacatggatgtcaaaaaggacttcaatctgtaaccacctcgagct------cctcctcctccccaggcaca--------gctctttgttatagcttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccattccacacaagaataaatcaacaagaa-tgttgtctttcatgctttccaaatatgttcagcatcacttgaatcactcctcacacctccttgtcccaggcaaca--------ctcctgttcataaccacAGCCTGGCTCCTTCTTCACCCCTATCCTACATTCATACAGTGATGTGATATGAGTGAGCCTTCTATGGTTGCAGgtagacagagtggttcataaaatatacaccaaagtgtccacatcctccactaagctctttcctgcagtctcat-----------cactcagagggaacataaagatgca------ctttccagtggtct----gggctctgcCACTGTGGGTGAGCCTCTC-----CCAGGTTCATTGT----AAGTCAGGCA---TCCCTCCTCAAGCTTATTCAGTTTCCTTGATTACACAGCTGCTATCACCCACATAAGGCTCTCATCTTGGTGTCTGCTGACATGTCACATTATGAGTGGGGCTTCTCAAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTG-TTACAGCTGTACTCTGCTCTGTCTTGTTCTT--CTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCTACTCAC--TCTGATATTCCTGATGTCCCGGAAAA--GAAGGCATACCTATATTTCCTTTCTCTTTTCAGTT-ACTTTTCTTTCCTCAATGGTATCACAAGCATATGTGTATGCATGCACAATAATTAAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGATCACAGAGGCTCTCTG---CTTTGTCTTTGATCTTACGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAACGTGTTAGAGCCTTCATCTCACTCCATGCCTTCCAAAACTGTCTGCTCTGTTT---------TCAAACTTCTCAAAGCATTCAGAGGTTTCCATAGTAACTCTTACTATTACTATTAA-----------CATAACTTAAATAGCAGAAA-GCCCAATTTTCTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGAAAACAGGCCCCCTGGAGGTTGCCATCCTTCTAGCCTGGTTGCCCAGAGGCCTTTCCTTCT-CTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACCTGTTAGCTGATTG-AGGATGGTGACTGTTGAAAGGTCAATGCTAATGTACA-----GGAAACACACAAC--CAGGTTATATAATAGTTTT------TTTTTTCCGGTTTGGT-----AATGGTTAAAGTGATCAGAAA----ATTATAAAATACATAGCATCCTCTCTTCTTGAGACATAATACATTGCTTTCCATTTTCAGTTAATT
s HiC_scaffold_1 131257525 2261 + 233722169 ttctgtataatgTGGATAATGGTGTTTCTCAAAATTACTTGATGGTATAAATACAAGCACTTTGTAGAAAACTGAGTATCAAGAAACATGTGAAGTCTAGGCATGTCtgcaaagaacaaaattaaatttctctCTGTAGCATTCAAAAGTTGACCATGTTAAGAAGT--TTTCTGCTTTTAGAAACAATTCTATCAAATATT-GGTCTCTAGGCTTATAAATGTTTGTACCAAAT--TTTATCTCTGAACACTAATAGTCTATAATTCTGAATCAGCTATGTTATCTGCTCCTCAAGCCTATGTACTTTATTA-AAAGTTATCTTTATTGCTCCTGGAATTCAAAAGGCATGAGTAATTGAGCACTTCTGTGCTACAACAGCATTTATGAAGAATTAATGAAGAATGGTAACCA--TGGAATCGCAAAGT---CTCACCTGTAGCTTAGAAG--ATTTGAACAGTAAAGATTAGTACCCAGGAGAGGAGA-----AATTGAATATAAGGAATTGTTAGCTGTTGAAGtcaggaaaagggaaaataatcaaATACCTTAAGTAGCAATCTCTATACTATATGAAATACCACTGttggaaaaa--tatagaaaattagagTCATTGGATCTGTCTTGGAGattttctctccctccatctgtcCTTCCTGACATCTAC-----GGACTCATATCATCTACATGTTGATGACTGtcaatttt--------tagaagttttaca-------gtGAATTCAGATTCTCATTTTAATCTACATGAAT------AGGGTCtgaaatgcatatttatttagaAATGGCTAAATTCAGATTTCTAAAATATACCAAATTTTCTCCactttcagtcttttctttccagtTGATAATAGTGCCATCTTTCCAAGT-GTTCAGGCAAAATTTGAAGTCTT--CTCAactctta-cattttcttctttcctgccttACCCCACGTACATCTAAACCATCAGGAAATCTTGTCTATGACACCCTCAAAATATATTCAGAGTCAT--------------AAACATCCCTGTCTTAGTTACCATCACTTCTCACCTGTCCAAACTCCCTGCCTGG-TCCTTCTGCACTTCT------------------------------GTGAGGCCACAGTGTTTATA--CAGGATGAATGAGCCACAAAC------------------CCTCCTCCAT--ATCCCTCTGCCTCAGTCACAGTGACCCCCGAACACGCAT-GGGAGCATGAGAAGTGAGCCCGTCTTCCCAGTGGTCTCTCCAGGTCCAGCTCCTGCATTTTTCCTCCTCAGTCACCACTTTTTTTGTTGCCACATCAAGCAGCCTCTCACCTCCATGCTCTTCGGGTCCCGCAGGTTTCCAAGGGCCTCTTCCCCCA-------CTCGTTGCGGCCCCTGGCCAGGCGTCACATGCTCAGCGAGGTCTTCC--TGACTCCCCCACATACAGCAGTACCTCACGTCCTCCCCTGATTGCAGCCACAGCCCCCTCTGTATTCTCCTTTCCTGATCTTACATACTCTGCAGCAATCTCTTGCCAAACCACTTGGCACTTTATTCATCTTTTCAAATT----ATACTCCGTGAGGCTAAAggc-------------ctttttctctttaattcacTGTTCTCTCCTCCAGCACACCATGagtat---------------------ttagtaaatattt-----acctCATGTGACTCTAAGAGCtaatttacagatgagaaaactgagg-ctcagggatgcCCTgagtctttttgctt--ttttgtggcGAGA------------------------TAGGAT-------TGAACCCTGTCCACGactccatctccctctgt-ccctccagcACTGACCACACTATCTCAGGCTGCTTCTTCTTTCCTGTAGCACTCAGAG--TTCTATAATAGT-----CGATCATTATTAGTTTTTTACCTTCATGATTGGTACAGAAGAAACGCCCTTCCTCCTTACCTTTATGTGTTCAATTATTTCTCCATCTTCTGGCACATCAGGATCTATAGCAACGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCCCCAGCAGGTGCAGGACTAAGAGGGG------AACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATG--TATATATACTCCTAAAAATTATCTGTT-GTTGATTATGGGATGGAGACTGTGTAAAGGTCAATGTTAttacacatacagaaaaatatgtgACTTTAGCTTCCACAATATTTATTGCACATTATTGAAAATTAAGTGTTCAAATGGCATAATAGATATGGAATATGTTTATCAAATGTACTGCACATTTTCTTCCTGATAC-TGTTTTA-TACTTCCTAATTTTCATTAATT

a score=29865
s chr3           144887700 2651 + 160039680 TGTATAA-GTAGATAATGGCAAGTCACAATAGTGGCTGATGATA-------GAGAATTTTGTAAAAGGCTAAGTGTCAA-AACCTAC-TAAACTATAGGCATGTTGGCAAAGGA-----TTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTTTGTCTCTAATAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAGTTTGAAGCCAATCATTTATTCCTCTACACCAAGAATCCACCATTGAGAGTCTG--------------------GTCTTTGTATTCTATGGGAAAAATATGTTT-TGTCTTTTAGAGTTCAAAGGACACCAGGTAC--GACACCTCTGAGCTGATGGGTGGGTGATAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCAGAAGGAAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGTCCAGTGAGGACGACCCCAAACCAAGTACAAGAAGTTGT-GGATGTTGCTCCTGAGGACGTGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACA-----TGGAATGTTGGAGTTGGAAGAGACTTTAGCAACCTAAAGTCCTAGGATTAGTGAGGGGG----CCTCTCCCTCTGTTTG------CAACCACTTGGTGGGCTCACACCCTCCACACAGTGATCGTCTCTAATTTTCAT-TTAAGTACACATTTTACATCTCCCCATGGATTCAGAGGTCTGTCTCT-tctacatggatg---------------------tcaaaaaggact----tca-atctgtaaccacctcgagctcctcctcctccccaggcacagctctttgttatagcttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccattccacacaagaataaatcaacaagaa-tgttgtctttcatgctttccaaatatgttcagcatcacttgaatcactcctcacacctccttgtcccaggcaaca--------ctcctgttcataaccacAGCCTGGCTCCTTCTTCACCCCTATCCTACATTCATACAGTGATGTGATATGAGTGAGCCTTCTATGGTTGCAGgtagacagagtggttcataaaatatacaccaaagtgtccacatcctccactaagctctttcctgcagtctcat-----------cactcagagggaacataaagatgca------ctttccagtggtct----gggctctgcCACTGTGGGTGAGCCTCTC-----CCAGGTTCATTGT----AAGTCAGGCA---TCCCTCCTCAAGCTTATTCAGTTTCCTTGATTACACAGCTGCTATCACCCACATAAGGCTCTCATCTTGGTGTCTGCTGACATGTCACATTATGAGTGGGGCTTCTCAAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTGTTACAGCTGTACTCTGCTCTGTCTTGTTCTT--CTGAGGCAGCGTGCTCCACAGTAACCT--------ACTAACCTCA-TACCTACTCTCCTACTCACTCTGATATTCCTGA----TGTCCCGGAAAAGAAGGCATACCTATATTTCCTTTCTCTTTTCAGTTACTTTTCTTTCCTCAATGGTATCACAAGCATATGTGTATGCATGCACAATAATTAAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTACGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAACGTGTTAGAGCCTTCATCTCACTCCATGCCTTCCAAAACTGTCTGCTCTGTTTTCAAACT----------TCTCAAAGCATTCAGAGGTTTCCATAGTAACTCTTACTATTACTATTAA-----------CATAACTTAAATAGCAGAAA-GCCCAATTTTCTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGAAAACAGGCCCCCTGGAGGTTGCCATCCTTCTAGCCTGGTTGCCCAGAGGCCTTTCCTTCT-CTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACCTGT-TAGCTGATTG-AGGATGGT-GACTGTTGAAAGGTCAATGCTAATGTACA-----GGAAACACACAAC--CAGGTTATATAATAGTTTTTTTTTTCCGGTTTGGTAATGGTTAAAGTG--ATCAGAAAA-----------TTATAAAATACATAGCATCCTCTCTTCTTGAGACATAATACATTGCTTTCCATTTTCAGTTAATTTCCTAAGCATACACACAGAGGT-------------------TGTGACCCT-------------ATATAAT---AGCGTCATAAAATAAAG--------------------------------------------------------------CCACAATAAATTGTAGAGAAATTCTAAAGTCCTGCCTCCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATCTATACAATAGTGATACAAATA-------AAATGCT------AGGTAAAATGAGCTTGAAACAC-AAGGCTGTAAAGCATCTGCTACATTTAAGGAGATTTGATAAAGTCAAGTTATCACAGTAAACAAGCAAGCAAACAGACCACCCCTACTATACAGGAATAGAACTTGTTTT---TCTATG---------------TCTTACTTTGCTGGTCACTGTTGAGGAAGGATAAACAATAT
s HiC_scaffold_1 131123701 2717 + 233722169 TGTATAATGTGGATAATGGTGTTTCTCAAGATTACTTGATGGTATAAATGCAAGCACTTTGTAGGAAACTGAATACCAAGAAACTATGTGAAGTCTAGGCATGtctgcaaaaaacaaaattaaatatctcTTTGTAACTTTCAAAAGATGATCGTATTAAGAAGT---TTTCGCTTTTAGAAACAATTCTATCTAATA-ACGGTCTCTAGGCTTATAAAAGTTTGTACCAAAT--TTTATCTCTGAACACTAATAGTCTATAATTCTGAATCAGCTATGTTATCTGCTCCTCAAGCCTATGTACTTTATTA-AAAGTTATCTTTATTGCTCCTGGAATTCAAAAAGCATGAGTAATTGAGCACTTCCGGGCTACAACAGCATTtatgaagaatgaatgaaaaatggtAACCA--TGGAATCGCAAAGT---CTCACCTATAGCTTAGAAG--ATTTGAACAGTAAACATTAGTACCCAGGAGAGGAGA-----AATTGAATATAAGGAATTGTTAGCTGTTGAagtcaggaaaagagaaaataatcaaatacCTTAAGTAGCAATCTCTATACTATATGAAATACTACTGttggaaaaa--tatagaaaatta--gtCATTGGATCTGTGTTGAAGactttctctccctccatctgtcCTTCCTGACACCTA-CGGACTCATATCATCTACATGTTGATGActgtcaatttttttattttatagaagttTTACA-------GTGAATTCAGATTCTCATTTTAATCTACATGAATAGGGTCTGAAATGCACATTTATTTAGAAATGGCTAAATTCAGATTTCTAAACTACCAAATTTTCTCCactttc--------agt------------cttttctttccagtTGATAATAGTGCCATCTTTCCAAGT-GTTCAGGCAAAATTTGAAGTCTT--CTCAactctta-cattttcttctttcctgccttACCCCACATATATCTAAATCATCAAGAAATCTTGTCTATGACACCctcaaaatatattcagaatcAT--------------AAACATCCCTGTTTTAGTTACCATCACTTCTCACCTGTCCAAACTCCCTGCCTGG-TCCTTCTGCACTTCT------------------------------GTGAGGCCACAGTGTTTATA--CAGGATGAATGAGCCATAAAC------------------CCTCCTCCAT--ATCCCTCTGCCTCAGTCACAGTGACCCCCGAACACGCAT-GGGAGCATGAGAAGTGAGCCCGTCTTCCCAGTGGTCTCTCCAGGTCCAGCTCCTATATTTTTCCTCCTCAGTCACCACTTTTTTTGTTGCCACATCAAGCAGCCTCTCACCTCCATGCTCTTCGGGTCCCGCAGGTTTCCAAGGGCCTCTTCCCCCA-------CTCATCGCGGCCCCTGGCCAGGCGTCACATGCTCAGCAAGGTCTTCC--TGACTCCCCCACAAACAGCAGT-----CCTCCCTTG---ATTGCAGCCACAACCCCCTCTGAATCGTCCTTATCTGATCTAACATACTCTGCAGCAATCTTGGTAAGAACCAATCTTGGTAAGAACTCGgcattttattc--atctttccAAATTGTACTCCGTGAGG----------CTAAAggccttttcccctttaattcaCTGTTCTCTCCTCCAGCACACCATGagtat---------------------ttagtaaatattt-----acctCATGTGACTCTAAGCGCTAATTTACAGGTGAGGAAAGTGAGGCTCTGGGATGACctgagtttt---ttggtttttttggtgaGA---TCGGAT----------------------------TGAACCCTGTCCACGactccatctccctctgt-ccctccagcACTGACCACACTATCT-CAGGCTGCTGCTTCTTTCCTGTAGCACTCAGAG--TTCTATAATAGT-----CGATCATTATTAGTTTTTTACCTTCATGATTGGTACAGAAGAAACGCCCTTCCTCCTTACCTTTATGTGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCCCCAGCAGGTGCAGGACTAAGAGGGG------AACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATG--TATATATACTCCTAAAAATTATCTCTGCTGTTGATTATGGGATGGGAGACTGTGTAAAGGTCAATGTTAttacacatacagaaaaatatgtgACTTTAGCTTCCACAATA--TTTATTGCACATTATTGAAAAGTGTTCAAGCGGCATAATAGAAATGGAATATGTTTATCAAATGTACTGCACATTTTCTTCCTGATAC-TGTTTTA-TACTTCCTAATTTTCAATAATTCCCTAAATATAGGCATAAACTTTACAGTTTATAGAATGTAATGTGAACTTTATAGTTTATAGAATATAATGTGAACTTTATAGAATGTAACGTGAAAACTGAGCATTTCAGTTCATGAAGTATAAACCCGTTCAGTGTGCATCTTCCTATGTCCAAAATAAATTGAACAGATGTGATAATGATGTGGCTCAGTTTTGTAAAACAATTTAATTATTATCTAGGTCATTTTTTATCTAAATGATGGT-ATACAATCATAAGTATAAATACTTAAATGAGGTAAGATGtattt-aaacacaaaaattttaatgcCTGTGATAAACTTA---AGATTtgataaattcaaatttttaaatttttaaa---------------actcctgtTTAGTATGAATAGAATTTGTTTTATATCTATACACAACAAACACAACTGGTACTTTAGTGGTTACTGTAAAGGTAGCATGAATAACAT

a score=30491
s chr3           144887782 2573 + 160039680 CTATAGGCATGTTGGCAAAGGATTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTTTGTCTCTAATAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAGTTTGAAGCCAATCATTTATTCCTCTACACCAAGAATCCACCATTGAGAGTC-----TGGTCTTTGT----------------ATTCTATGGGAAAAATATGTTTTGTCTTTTAGAGTTCAAAGGACACCAG--GTACGACACCTCTGAGCTGATGGGTGGGTGATAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCAGAAG--GAAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGTCCAGTGA-GGACGACCCCAAACCAAGTACAAGAAGTTGTGGATGTTGCTCCTGAGGACGTGAGAAATGAT-CATGTAGCTGAAATGGCAGTCTTT-----ACATGGAATGTTGGAGTTGGAAGAGACTTTAGCAACCTAAAGTCCTAGGATTAGTGAGGGGGC--CTCTCCCTCTGTTTGCAACCACTTGGTGGGCTCACACCCT-------CCACA-----CAGTGATCGTCTCT--AATTTTCATTTAAGTACACATTTTACATCTCCCCATGGATTCAGAGGTCTGTCTCTtctacatggatgtcaaaaagg-acttcaatctgtaaccacctcgagct---cctcctcctccccaggcacagctctt-------tgttatagcttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctacctt-ctccat-tccacacaagaataaatcaacaagaatgttgtctttcatgctttccaaatatgttcagcatcac----ttgaatcactcctcaca---cctccttgtcccaggcaacactcctgttcat-aaccacAGC-------CTGGCTCCTTCTTCACCCCTAT------CCTACATTCATACAGT-GATGTGATATGAGTGAGCCT-----------TCTATGGTTGCAGgtagacagagtggttcataaaatatacaccaaagtgtccacatcctccactaagctctttcctg--cagtctcatcactcagagggaacataaagatgca---ctttccagtggtctgggc----tctgcCACTGTGGGTGAGCCTCTCCC------------AGGTTCATTGTAAGTCAGGCATCCCTCCTCAAGCTTAT---TCAGTTTCCTTGATTACACAGCTGCTATCACCCACATAAGG-----------------CTCTCATCTTGGTGTCTGCTGACATGTCACATTATGAGTG-GGGCTTCTCAAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCT--GTTACAGCTGTACTCT-GCTCTGTCTTGTTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCTACTCACTCTGATATTCCTGATGTCCCGGAAAAGAAGGCATA-CCTATATTTCC------TTTCTCTTTTCAGTTACTTTTCTTTCCTCAATGGTATCACAAGCATATGTGTATGCATGCACAATAATTAAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTACGGTGAGAAGATCATATCTCT-TCTAGAACCTCTAGAACCTTCATCTGGAACGTGTTAGAGCCTTCATCTCACTCCATGCCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAG----CATTCAGAGGTTTCCATAGTAACTC-TTACTATTA-----CTATTAACATAACTTAAATAGCAGAAAGCCCAATTTT--CTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGAAAACAGGCCCCCTGGAGGTTGCCAT-----CCTTCTAGCCTGGTTGCCCAGAGGCCTTT-------------------CCTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACC-----TGTTAGCTGATTG-AGGATGGTGACTGTTGAAAGGTCAATGCTAATGTAC---AGGAAACACACAACCAGGTTATATAATAGTTTTTTTTTTCCGGTTTGGTAATGGTTA---AAGTGATCAGAAAATTATAAAATACATAGCA---TCCTCTCTTCTTGAGACATA---------------ATACATTGCTTT-----CCATTTTCAGTTAATTTCCTAAGCATACACACAGAGGTTGTGACCCTATATA----ATAGCGTCA----TAAAATAAAGCCACAATAAATTGTAGAGA------AATTCTAAAGTCCTGCCTCCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATCTATACAATAGTGATACAAATAAAATGCTAG-----------GTAAA--ATGAGCTTGAAACACAAGGCTGTAAAGCATCTGCTACATTTAAGGAGATTTGATAAAGTCAAGTTATCACAGTAAA-CAAGCAAGCAAACAGACCACCCCTACTATAC--------AGGAATAGAACTTGTTTTTCT---------------ATGTCT--TACTTTGCTGGTCACTGTTGAGGAAGGATAAACAATATAAAT
s HiC_scaffold_1 131170204 2678 + 233722169 CTCTGGAAATGTCTGTGAATAGTACAATTTCTATTTGTGTTGTCTAATAGAGGGTCATGTTACGAATTTTTTCCCCTCACACATAAT---TCTATCAAATAGCGATTT-CTGGGTTCAGAAATGTTCAAAA--AGTTAATTAT--CTGAACACTAA-AATCTATCATTCAGAATCAGCTGTGCTATCTGTTCCCCAAATCCACACTATTTAGTAAAAGCAATCTTCATTTTCTCCTACAATTCCATAGGTACCAATAAGAAAACACCTTTGTGTGGCAACAGAATTTATGAGGAATGAATGATAAATGTCATCCA--TGGCATCAGCAGCTTTCCACTCAGGTCATGCACATTAGAAAGTTTAAACA---------GGACCTAGGAATGGAGGATTTTAG-----GAGAAAGAACTGTTAGATATTgatgtcaagaaaaagaaaaataattcatatagCTGAAATAGCAATATCTGTGCTACATGGAATGTTAGAGTgggaagaaattttagaaaattggaGTCCTTGAGCAACTTCTGGAGtgattccttttctgtttttactcACTCAGTGGACTCATATTATGGCTGAGTCACTGATGTCATTGATTGGCTTTCAAATTTTTATGTATGTGCAA---TTATTTTTTACCATGAATTCAGATTTGTATTTTCTCTACTTGGAGGTCTAAAGTGCATCTCATCTTCAAAACACCCCAAACTAACTCTGCATCTCCCAACTGCCAAATATTCTCCACTTAcaattttttcccttcccagttaAAGAAAATCTCATGTTTCCAAGT-GTTCAGGCAGAGCCTTGAAGCCTTCTTCAGCTCtta-catttccttccttccctgccccACATACACCCGACCATAGGCCA-------TATCACCTGTGAAACCCGTAAAATACCttgacaatcacacattttaataGTCTCTACCATGACCTCCCTGTCCTACTC------CCTGCTCACCAGCCTTAGCTCCTTTCCTGGTTC-TTCTAAACTTCTGTGTGACAACAGCATTCATGCAGGAGAGGTGACAATGGAAATCTTCCCCCACTTTCTCCACGCTT---------CAGAG-GGATCCCGGAAGACATACAAGAGCACACACCTCTGCTCAGAAGC-CTTCCGTGGGTGCTCTTCTCACTCAGG------ATAAAAGCTCAAGTCTGTCCTGTGATCCGGAGAGTGGCTGCCACTGCAGCTTTGCCGCCCCCTTGCCCTTCCTCCTGCTCATTGCTGTTGTG-------TTCTTGGGCTCACCAATCAGTCTCTTATCCTTCGGTGTTCCCATCCAGCAGGTTTGGGGGGGGGGCTCCTCTCTCACTCATCTCTGTCTCTGCTCAGATGTCACATCCTCAGTGCTGTCTTCCC--TGACTCCCCTACATTCAACAGTAGCAGAAAATCTCCCCTCTGTTCCAGCCACATCctcattctgttctcttttcttgatTTACTGTACTGCAGAGAAACTCCCTGCCTTCTCATCAGCTGCGTTACTCATTTCTATC------ATGTCTCTTAAAAGAATACACAATCCATGAGGCCAGGaacctttttatttaattcatggcTCTTTCTTCCAACATGACAtaagcattt-----------------aataaataattatttcaagATCA---TGTGAACCAAAGAACTAagttccagatgaggaaactgaggctcagggaggacCTGAATGCTGT-TCTGCTCTT-----GAGAGAAACGGAACTCTGTCTAGGAC---------------------------------TCCACTTAACTTCTGCCCCTCCAGCACTGTCCTTATCTGTTCCAAGCTTCTTTGAAACTTCCTGCAACAGTTTCCATAATAACCAGTCACTACTAATTTTCTTTCCTCATAATTCAAACTGAAGAAATTTCCTTTTTGCCTTACCTTTATGTGTTCAATTATTTGGGGATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCCTTTGAGTCCCCCAGCAGGTGCAGGACTAAGAGGGG------AGCGAGGGCTCTGAACAACCCCATGGTTCCTCTCCAG---AGCTTTCCCGACGCttgtttccatatatatatacacaccatatatatatgtatatatatatatgtatatatatatatatataatcatgagTGTTGGCCAATTATGGGATGTTGGCTGTATAAAGGTC-ATGGTAGTATATGTGGGAAAAGGTATGACTTCAATTTACACAGGTTTTATT------GTATGTCAAGAGACATGCAGGAAATCAAATCTTTTTACAATGTACtccacatttttctcttc-tgagaCATATTTTTCCCatgattcatatatttttatagtgCCTAATTCTGGTTAATTTCCTAAATGTAAACATGGAGTTTAT-ACTCTGTGCAGAGTATACTGTGAAAATTAGTACAAATTCATAATGAACTGAACAGATGCATTGATGCTAATGATTT-TCTTCAGTTTGCAGAACAATTTAATTATGATCTAGATTATTTATCATCtaaataaca-------aaaccaaatgtAAGATCATTCTGTTGTAAATgataaacaataaacaaaatg-ggTATGGAATTTGA-ACATTTTAAGGATTTTGATAAATTTAAGATTTGATAGTCAATTCATTAAACAAAAA--------TTACTGTACAGTAAAGAAggaatagaatttatttttctccaaacaTGTTAAAAATATCTAGTACTTTGCCAGTTATTATTGATGCAGTGTAAATAATATTAGT

a score=21053
s chr3           144888490 1865 + 160039680 ttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccattccacacaaga--ataaatcaacaagaatgttgtctttcatgctttccaaatatgttcagcatcac----ttgaatcactcctcaca---cctccttgtcccaggcaacactcctgttcat-aaccacAGC-------CTGGCTCCTTCTTCACCCCTAT------CCTACATTCATACAGT-GATGTGATATGAGTGAGCCT-----------TCTATGGTTGCAGgtagacagagtggttcataaaatatacaccaaagtgtccacatcctccactaagctctttcctgcag----tctcatcactcagagggaacataaagatgca---ctttccagtggtctgggc----tctgcCACTGTGGGTGAGCCTCTCCC------------AGGTTCATTGTAAGTCAGGCATCCCTCCTCAAGCTTAT---TCAGTTTCCTTGATTACACAGCTGCTATCACCCACATAAGG-----------------CTCTCATCTTGGTGTCTGCTGACATGTCACATTATGAGTG-GGGCTTCTCAAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTGTTACAGCTGTACTCT-GCTCTGTCTTGTTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCTACTCACTCTGATATTCCTGATGTCCCGGAAAAGAAGGCATA-CCTATATTTCC------TTTCTCTTTTCAGTTACTTTTCTTTCCTCAATGGTATCACAAGCATATGTGTATGCATGCACAATAATTAAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTACGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAACGTGTTAGAGCCTTCATCTCACTCCATGCCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTC----AGAGGTTTCCATAGTAACTC-TTACTATTA-----CTATTAACATAACTTAAATAGCAGAAAGCCCAATTTT--CTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGAAAACAGGCCCCCTGGAGGTTGCCATCCTTCTAGCCTGGTTGCCCAGAGGCCTTTCC-----------TTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCAC--CTGTTAGCTGATTG-AGGATGGTGACTGTTGAAAGGTCAATGCTAATGTACA---GGAAACACACAACCAGGTTATATAATAGTTTTTTTTTTCCGGTTTGGTAATGGTTA---AAGTGATCAGAAAATTATA--AAATACATAGCATCCTCTCTTCTTGAGACATA--------------ATACATTGCTTT-----CCATTTTCAGTTAATTTCCTAAGCATACACACAGAGGTTGTGACCCTATATA----ATAGCGTCA----TAAAATAAAGCCACAATAAATTGTAGAGAAATTCTAAAGTC-----CTGCCTCCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATCTATACAATAG--------------------TGATACAAATA--AAATGCTAGGTAAAATGAGCTTGAAACACAAGGCTGTAAAGCATCTGCTACATTTAAGGAGATTTGATAAAGTCAAGTTATCACAGTAAACAAGCAAGCAAACAGACCACCCCTACTATAC--------AGGAATAGAACTTGTTTTTCT---------------ATGTCT--TACTTTGCTGGTCACTGTTGAGGAAGGATAAACAATATAAAT
s HiC_scaffold_1 131095302 1907 + 233722169 ttcccttcccagttaCAGAAAATCTCATGTTTCCAAGT-GTTCAGGCAGAGCCTTGAAGCCTTCTTCAGCTCtta-catttccttccttccctgtcccACATACACCCGACCATAGGCCA-------TATCACCTGTGAAACCCGTAAAATACCttgacaatcacacattttaataGTCTCTACCATGACCTCCCTGTCCTACTC------CCTGCTCACCAGCCTTAGCTCCTTTCCTGGTTC-TTCTAAACTTCTGTGTGACAACAGCATTCATGCAGGAGAGGTGACAATGGAAATCTTCCCCCACTTTCTCCACGCTT-CAGAGGGAC-------CCCAGAAGACATACA----AGAGGACACA-CCTCTGCTCAGAAGCCTTCCGTGGGTGCTCTTCTCACTCAGG------ATAAAAGCTCAAGTCTGTCCTGTGATCCGGAGAGTGGCTGCCACTGCAGCTTTGCCGCCCCCTTGCCCTTCCTCCTGCTCATTGCTGTTGTG-------TTCTTGGGCTCACCAATCAGTCTCTTATCCTTCGGTGTTCCCATCCAGCAGGTTTGGGGGGGGGGCTCCTCTCTCACTCATCTCTGTCTCTGCTCAGATGTCACATCCTCAGTGCTGTCTTCCC--TGACTCCCCTACATTCAACAGTAGCTCAAATTCT---CTGTTCCAGCTACATCctcattctgttctcttttcttgatTTACTGTACTGCAGAGAAACTCCCTGCCTTCTCATCAGCTGCGTTACTCATTTCTATC------ATGTCTCTTAAAAGAATACACAATCCATGAGGCCAGGAACCTTTTTCTGTAATTCATGGCTCTTTCTTCCAACATGACAtaagcattt-----------------aataaataattatttcaagATCA---TGTGAACCAAAGAACTAagttccagatgaggaaactgaggctcagggaggacCTGAGCTCTGT-TCTGCTCTTGAGACAAACGGA----ACCCTGTCTAGGAC---------------------------------TCCACTTAACTTCTGTCCCTCCAGCACTGTCCTTATCTGTTCCAAGCTTCTTTGAATCTTCCTGCAACAGTTTCCATAATAACCAGTcactattaattttctttcctcataATTCAAACTGAAGAAATTTCCTTTTTGCCTTACCTTTATGTGTTCAATTATTTGGGGATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCGTTTGAGTCCCCCAGCAGGTGCAGGACTAAGAGGGG------AGCGAGGGCTCTGAACAACCCCATGGTTC--------CTCTCCAGAG--CTTTCCCGACGCTcgttttccccttttctttcacCATATATATACACAGTCCTAAA-ATCATGAGTGTTGGCCAATTATGGGAAGTTGGCTGTATAAAGGTC-ATGGTAGTATATATGGGAAAAGGTATGACTTCAATTTACACAGGTTTTATT------GTATGTCAAGAGACATGCAGGAAATCAAATCTTTTTACTATGTACtccacatttttctcttctgagGCATATTTTTCCatgattcatatatttttatagtgCCTAATTCTGGTTAATTTCCTAAATGTAGACATGGAGTTTAT-ACTTTGTGCAGAGTATACTGTGAAAATTAGTACAAATTCATAACGAACTGAACAGATGCATTGATGctagtaatttttttcagtttgcaGAACgatttaattattttctagatTATTTATCATCTACATAACAAAACCAAATGTAAGACCATTCTGTtgtaaatgataaataataaacaaaatgggTATGGAAT-CTGAACATTAAGgattttgataaattta---aaatttgat-------agttaattcattaaacaaaaa----------------ttactgtacagttaagAAGGAATAGAATTTGTTTTTCTCCAAACATGTTAAAAATATCTAGTAGTTTGCCAGTTACTACTGATGCAGTGTAAATAATATTAGT

a score=19748
s chr3           144888560 1792 + 160039680 aacatttcctctctaccttctccattccacacaagaataaatcaacaagaatgttgtctttcatgctttccaaatatgttcagcatcacttg-------aatcactcctcacacctccttgtcccaggcaacactcctgttcata-accacAGCCTGGCTCCTTCTTCACCCCTATCCTACATTCATACAGTG---------ATGTGATATGAGTGA-------GCCTTCTATGGTT------GCAG-gtagacagagtggttcataaaatatacaccaaagtgtccacatcctccact--aagctctttcctgcagtctcatcactcagagggaacataaagatgcactttccagtggtctgggctctgcCACTGTGGGTGAGCCTCTCCCAGGTTCATTGTAAGTCAGGCATCCCTCCT---------------CAAGCTTATTCA----------GTTTC----CTTGATTACACAGCTGCTATCACCCACAT----AAGG-----------CTCTCATCTTGGTGTCTGCTGACATGTCACATTATGAGTGGGGCTTCTCAAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTGTTACAGCTGTACTCTGCTCTGTCTTGTTCTTCTG---AGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCTACTCACTCTGATATTCCTGATGTCCCGGAAAAGAAGGCATAC-CTATATTTCCTTTCTCTTTTCAGTTACTTTTCTTTCC-----TCAATGGTATCACAAGCATATGTGTATGCATGCACAATAATTAAAAAA--AATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTACGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAACGTGTTAGAGCCTTCATCTCACTCCATGCCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAA--------GCATTCAGAGGTTTCCATAGTAA-CTCTTACTATTA--CTATTAAC----ATAACTTAAATAGCAGAAA-GCCCAATTTTCTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGAAAACAGGCCCCCTGGAGGTTGCCATCCTTCTAGCCTGGTTGCCCAGAGGCCTTTCCTTCT---CTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCA--CCTGTTAGCTGATTGAG-GATGGTGACTGTTGAAAGGTCAATGCTAATGTACAGG---AAACACACAAC--CAGGTTATATAATAGTTTTTT---TTTTCCGGTTTGGTAATGGTTAAAGTG----ATCAGAAAA-------TTATAAAATACATAGCATCCTCTCTTCTTGAGACATAATACATTGCTTTCCATTTTCAGTTAATTTC--CTAAGCATA---CACACAGAGGTTGTGACCCTATA--TAATAGCGTCATAAAATAAAGCCACAATAAATTGTAGAGAAATTCTAAAGTCCTGCCTCCATTTTAAAGAGCAA-----------------ATCACTTATTACCTATTCTCTCTGTCATCTAT-ACAATAGTGA----------------TACAAATA-----AAATGCTAGGTAAAATGAGCTTGAAAC------ACAAGGCTGTAAAGCATCTGCTACATTTAAGGAGATTTGATAAAGTCAAGTTATCACAGTAAACAAGCAAGCAAACAGACCACCCCTACTATACAG---GAATAGAACTTGTTTT---TCTATGTCT---------------TACTTTGCTGGTCACTGTTGAGGAAGGATAAACAATATA
s HiC_scaffold_1 131217945 1818 + 233722169 aaaattttttcttttctttcttta------aataaagttaaaaaaaagaaatgttgccTCTGATGCTCTCAAAATATGTTCAGAATCACATACTTTAATGATCTCTACAACCACCTCCCTGCCATGGTCACCATAGCTGCTCACCTGCCACAGG-----TCCATATCTGATTCTTCTATGTGTCTATGCTGTGGCAGAGTTCATGTAGCATGGGTGACAGTGCAGCTATCTCCTGTTTTCTTCGCATCACAGTCAGAGTGATCC-------------CAGAG----CATGTCTCCTGCTTAAAAGCCTTTCATGGATTATCA--GCTCAGAGTAAAAGCTCAAAT---TATCCCAAGGGTCTGGGCTCTGC---------------TCTATCAGCTTCAT-GAACGCCAGTCCTTCCTCCTGTTCAGTCACTGTCATCACCTTAGTCATCTCAAGCAGGTTTCTAACCTTCATTCTAG---TGCTATCCTGCAGGTGGCCAAGGGGGTCTTCCCTCACTCCTCTCAGTCTCTGCCTAGATGTTACCGTGCCAGTGAG-TTTTTCCCTGACTATCCTCCATGAGAGAGGTTCT----CTCT---CTGTGCAAGCCACACCC--CTCAATTTATGTCCTCTGTCTATATATCGTAACCCTCAGAAACATAATA---TCTGACCtgctattttattcatttt--tcttaattatatgtCTTAAATGTATGTATACTCCATGATGCC-----------AGATGCTTTATTTTCTGTAGTTCACTGCTCTCCT-----------TCAGCATGCATAAGCATTCAATAATTAATTATTTATGCAATAGATATATCCTACAGctaatttacagatgaggaaaccaaggctcagagaggAGCC------TGTCTTTGGTCTTGTAGTGAGA------------------------CAGGAT-------TGAACCGTATCCAGGACTTCATCTCTCTCTGCCCCTCCT----CTGTCCACACTACATCAATATGCTCTAAACTTATTTGGCATTCAGAG--TTTCAAAATAATCAGTCATTATCAGTTTTTTAACCTTCATAATTTGTACAGAAGAAGTGTCCTTCCTCCTTACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAGCCCCACAGCAGGTGCAGGACTAAGAGGGAAGCGAAGG------CTCTGAACAGCCCCATTGTTCCCCTCAAGTCGTTTGAAAAGCTTTTATTGTGACTTGTTTTTCTC--CACGTATATATATACTCCTAAAAATTATCTCTGTTA-CTGATTAGGTGATATTGACTGTGTAAAGGTCAGTG-TGACACATGGGAGAAGATATTTTACTTCAATTtgcataatattttattgtattttactgtAAATCAAATGATCAAGAGGCATAGCAGAAACCCaaactttataaaatgtattGCACATTTTCTTCTTGATAC---------TGTTTTATACTTAC---TAATTTTGATTAGATATATTTTATGTAGAG--TGTAATGtgagaattaataaaaattcataataaattaaaaataaattacatcatATTAATAAAGT--TGC--TCATCTCACAGAACAATAttattatatagattttttaCCTAATAATGATTATTTATGGAATAAATAATGCTAGTGAATGCAAGATCATGAAGCATAAGTAACACCAAATG--AggtaaaatggatttgaaatcTAGAGCTAAGACTTTAATGGCTTTGATAAATTTA---AGATTTGATAAGGTGAAGttatta------------aactaaaaagaaatccTATCCTGTATAGAATGAATGGAACTTGTTTTATACCCATGCATAACACAAGTACTTGCTACTTTGCTCATTACTGTTAAGATTATATGAATACAATA

a score=10176
s chr3           144889294 621 + 160039680 AAAAATTACAAA---AACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAAG----CTGAGATCACAGAGGCTCTCTGCTTTGTCTTTGATCTTACGGTGAGA--AGATCATATCTCTTCTAGAAC-----CTCTAGAACCTTCATCTGGAACGTGTTAGAGCCTTCATCTCACTCCATGCCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCAGAGGTTTCCATAGTAACTCTTACTATTACTATTAACATAACTT----AAATAGCAGAAAGCCCAATTTTCTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGA-------AAACAGGCCCCCTGGAGGTTGCCATCCTTCTAGCCTGG-TTGCCCAGAGGCCTTTC--------CTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACCT----GTTAGCTGATTGAGG-ATGGTGACTGTTGAAAGGTCAATGCTA---ATGTACAGGAAACACACAAC--CAGGTTATATAATAGTTTTTTTTTTCCGGT
s HiC_scaffold_1 131047006 622 + 233722169 aaaaatttcaaagttaaaaaaatgag--TCCAAGAGCTTATTTACAGATGAGGGAGGAAACTGAGATTCGAGGAGGTCATGGACTTGTCTTTGGCCTTGTAGTGGGACAAGGTGGGACCCGGTGCAGGACTCCAtctctt---tctgcctctccagCATG-----GTCTT--TTTCACACCATGCTGCT--------TCTGGACTCCCTGCAATATCCCCACAG-----ATATATTTCCACAATAATCGTT-----TGCTATTAACTTTGTTCTCCACAATTCAAGAAATCTGA----CCTTACCTTTATGCGTTCAATTATTTGTCTATCTTCTGGCACATCAGGATCTATTGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCTGCAGCAGGTGCAGGACTAAGAGGGGAGCGAGGGCTCTGAACAGCCCCATTG-----TTCCTCTGTTCCTTCTTGGTTTGAATGGTGGTTTGTCAAGTTTGTCTTTTGCGT-TTTCTTAGC--TTTTTCTCACACTCACACATACCATATCAGCATGGGCTGATTATGGAATATTAACTGAATAAAGGTCAGCCTTACATATGT-CATAAAACATGTGCCTTCAGTTTGCTCAATCGTTTTATTGTAcctgt

a score=5579
s chr3           144889560 162 + 160039680 AGAAAGCCCAATTTT---CTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCT---GACATCTGAAGCAGGTACAGGAGGAGGAGGAGGAGGAAA
s HiC_scaffold_1 131313314 168 + 233722169 AGTAAGTACCACTTTGAACTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGACGGAA

a score=5057
s chr3           144889571 127 + 160039680 TTTTCTTACCTTCATGCGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCTTTATCAAGGAAGTGTCTGACATCTGAAGCAGG
s HiC_scaffold_1 130996290 124 + 233722169 ttctcttaccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTT---CACCTCAGGCAAG

a score=3693
s chr3           144895049 137 + 160039680 cattccatcctgctgggctgctgcttTGTCTTCTGGCTACCACAAGATGACCAGGCTTCCTGTGCCACACACATCCACTATCACCATATATTGTGTGGCCACTGGCTTGAAGGCACATG----TGTGCCAAGTGACTGGAA
s HiC_scaffold_1 140122806 138 + 233722169 catcccttcctcctcctctcagtATTTGCCTTCTGGCTACCATGAGATGAACAGGCCTCCTCTGCCATATACACTTGCCCTGATC---TACTGTGTTATCCCTAACCCAGTGCAACAAGACCATGTGTCCATGgattgaaa

a score=92226
s chr3           144910634 5090 + 160039680 [encoded data, 5421 characters]
s HiC_scaffold_1 131147577 4863 + 233722169 [encoded data, 5421 characters]

a score=92707
s chr3           144910634 5140 + 160039680 [encoded data, 5480 characters]
s HiC_scaffold_1 131072359 4936 + 233722169 [encoded data, 5480 characters]

a score=70607
s chr3           144910654 5082 + 160039680 [encoded data, 5570 characters]
s HiC_scaffold_1 131233856 4861 + 233722169 [encoded data, 5570 characters]

a score=42256
s chr3           144910666 1780 + 160039680 CTTTTATATCCATGAATTAAAGCAA-----GTATGACCTTCAGAATGACAAAGTTGAGTTGTGGGTTTTGAGTTACTCTTATGTCATTAACTTATATTTATAATTCCAAGAGCAAGTTCCTTTTTTTCCTGTTAATGTTGTTGATCTTCTCTTTTATATTGTATGTTGGCTACTTAAAGAGAGATTTTGAATTTCTTCAGGCAATTTGAAGGATCATTTCAGAAAA-CTTCCGCAACAGAAAAAAAACACACATAGAGATCAATATAAA--ACCAGATTTATATATCACTATGATAAA----------------TGAATAAAATTATAAATC--ATTAA----------TATTGGTAGTTTCTC---------ATGGAATGGGTGTG---ATTAAAGTATCTTTTAGAC-CCTCTTGAAATGATATTTG-AGTTCATGATCACATGGAATATGCTTTAAAAACTCAGAAATATCTTTTGATT----CATGTTGCCTTTCAAAATGTTGTTGCAGCTCCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACTTACAATAATACAAACTAGTACAACAGAGCCCACCACAGACAGCACAATAGTAGAAATACTAACTCC----TGAT-----------GAACGTGGA---------CTTTCATCAGGGACAGGCTCTGCCTGAGGGGTGAACATTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAATTGTTTTTGTCGACACTTTCAATGGCAATGAATATGTAGGTTGCATTTTCTTCTGAGATATTTTCTGGTTTAAAGGCAAAGGTTTCTTTGGAGTTGGCTTCTTTTGGTGTAAGTTTAGTAGTATCAACCCGAAGAGAATTATTAAAATTGTCTCTGAGATCAATGATATTTTCGCTTGTTCTTATGATATACTGTTGAACTGAGAAAAATGTTATGTGTGGGTTAGTTATTGCATCACACCATATTAAATTTCTTTCTAGTTACCTTAACAAATAGTTT---GTCATAC------------------------TCACATCAAAAGTGTTATTCATTTTTCTGTAAAAGCTGA-GTTCTGACTTTATTT----ATTTATTTATttttgggtttttgagaaagggttgctctgtatagttctggctgtcc----tgtgaagtctgcctgcttctgcctcccaagtg----ctgggattaaaggcatgtgccatcattgcccaa--cCGAGTTCTGACTTTTAAAGACAGC------------------TGTGCA------------GGAAAATCAAGACCTGTTTCATAAACTATAAAACATCAGATCCTAAAATTCCTACTTGTCTGAGTTGTCAGTCATAAGTCCTCTCCTCTCACTGACCTGTCTGCTCTTGCTTCACCC-----TATCTCTCACT-TAGGTCAAACCCACAGGGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACTGATCAGGCAATGGACCAATTGGAACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATTCTCTAGGACTGGCTGAGTAGCCTCAGTCATTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGCATTTAAAATTCTCTAGTT--AAATTGG----ATGGAACTGTAAACTTTTTAGAACTCAATCAGTCAGCTTCCTGACCCTCCTTGTCTTTCCTTTCTTCTTTCTCTTTTCATTCCCACGGCTGTATTT---------TTATGATGTGCTACAATCATAAGCATTCCATTTGTGGGAAAATTCATCCTCCAGAATTATTAGCAAGATGTTATCAAATCAAATTGGACAATAACTTGCTGTGATGTGA
s HiC_scaffold_1 131107181 1903 + 233722169 ctcCCATACTCATGAATTGCAGGAATAGCAATGTAGCCATTATAATG------TATAACTGGAGATTTCTGGTGAATATAATGTCACCAACTAACATTGATAGCACCAACACCAAATCAATGTTTCcca----aatattatttatttggtattttaatctgtgttttgAATACTGAAATGGACAATTTTAGCTTCTTTATGAAATT--GAACATCATTTTAGAAAAGAATTCATCACA-AAATGATACACAACTAGGGATCAATAGGAAGAACTATCTTTATTCATCACTATgataaagataattaaaatgaattaattaaaatgataaatataattaacaaaatgAAGTATTCACAGTTGCTCTATATATTTGTGAAGTGTTTATTTCTACCAAAATATCCTTTCTAGGCTTCTTAATATAATTTTTGTAGTTCAGGACTTTAAGGATGA--ATTTAGGAATTCAGAGATACcttttacttatattattttgatttttaaaaccctGTTCTAGGTCTGTTtgaagagtttttcttttttaatatacaaATAGTAGTACCTAAAATAATACTAACAACTACAATAGTCCCTACTACTGACAAGACCAGAATAGAAATATTAACTCCAGAATGATAATTTTTATCAGGACTAGGATTAGAACCACTTTCATCAGGACCAGGATCTGCTACAGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATGTATCGTTCAACTAAGAAAAA-ATTACATCCAGTTCAGTAACTGTAGAATGTTGTattaaatttctttccatttattcttGAAGATATTCTTTAGTTATACAAAGTATACcgttgggctggggatataactcagcagtgcag--cacttgcctggaaagtgtgaggtcctgagttcaatttgcaatacaccaaaaacaaaaaaatccaaaacaaacaaacaaacaaacaccaaaccaaacaaaataaaaaatcaac---------caCCCCAAATATATCCTTATTTCAAAGGTCTTAGTGATTTTTACTAAaagctacattttcatttttaaattctgccAAATGCTACTACCTTAGTATGAAAAGAAGGGTCATGGTAAAACGTGTCATGTTTGAT---TGATAAA-----AGTTTCTGAAGTTAGCAGTATGCTGAACTGTCAGGTAC---TATTCTCCCTTAAGTTACTCTTATACCCTTGCTTTAGCAAAGAGCATCTTTAACTACATGAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTTTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAAGTCTGTGATTTGACTGGGTGGGTATAGGTCAGCGACTGCATTATTTTGATATCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTCAGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATTTCCCCTACATCAAATAGTTTCTGGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTCACAACATGGTGAAACACTTCCCTTATCtcgtttgacttttttttttgc----------cataccCACAGAAACATTTGGCTAAGTCTTGTGACACAATATTACTCTTGGGAAACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGAGTAAAAATAGATAACAAATTGCTGTGTCCTGA

a score=43929
s chr3           144910666 1780 + 160039680 CTTTTATATCCATGAATTAAAGCAA-----GTATGACCTTCAGAATGACAAAGTTGAGTTGTGGGTTTTGAGTTACTCTTATGTCATTAACTTATATTTATAATTCCAAGAGCAAGTTCCTTTTTTTCCTGTTAATGTTGTTGATCTTCTCTTTTATATTGTATGTTGGCTACTTAAAGAGAGATTTTGAATTTCTTCAGGCAATTTGAAGGATCATTTCAGAAAA-CTTCCGCAACAGAAAAAAAACACACATAGAGATCAATATAAA--ACCAGATTTATATATCACTATGATAAA--TGAATAAAAT--------------------TATAAATCATTAA------TATTGGTAGTTTCTC---------ATGGAATGGGTGTGATTA---AAGTATCTTTT--AGACCCTCTTGAAATGATATTTG-AGTTCATGATCACATGGAATATGCTTTAAAAACTCAGAAATATCTTTTGATT----CATGTTGCCTTTCAAAATGTTGTTGCAGCTCCTGATGAGGACCTTTTGTTCTTTAAGATACAAATAGTGGTACTTACAATAATACAAACTAGTACAACAGAGCCCACCACAGACAGCACAATAGTAGAAATACTAACTCC----TGAT-----------GAACGTGGA------------------------CTTTCATCAGGGACAGGCTCTGCCTGAGGGGTGAACATTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAATTGTTTTTGTCGACACTTTCAATGGCAATGAATATGTAGGTTGCATTTTCTTCTGAGATATTTTCTGGTTTAAAGGCAAAGGTTTCTTTGGAGTTGGCTTCTTTTGGTGTAAGTTTAGTAGTATCAACCCGAAGAGAATTATTAAAATTGTCTCTGAGATCAATGATATTTTCGCTTGTTCTTATGATATACTGTTGAACTGAGAAAAATGTTATGTGTGGGTTAGTTATTGCATCACACCATATTAAATTTCTTTCTAGTTA--CCTTAACAAA-TAGTTTGTCATACTCACATCAAAAGTGTTATTCATTTTTCTGTAAAAGCTGAGTTCTGACTT----------TATTTATTTATTTATttttgggtttttgagaaagggttgctctgta-----------------------------------tagttctggctgtcctgtgaagtctgcctgcttctgcctcccaagtg----ctgggattaaaggcatgtgccatcattgcccaa--cCGAGTTCTGACTTTTAAAGACAG--------------CTGTGCAGGAAAATCAAGACC---------TGTTTCA----TAAACTATAAAACATCAGATCCTAAAATTCCTACTTGTCTGAGTTGTCAGTCATAAGTCC---TCTCCTCTCACTGACCTGTCTGCTCTTGCTTC-----ACCCTATCTCTCACT-TAGGTCAAACCCACAGGGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACTGATCAGGCAATGGACCAATTGGAACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATTCTCTAGGACTGGCTGAGTAGCCTCAGTCATTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGCATTTAAAATTCTCTAG-TTAAATTGGATGGAACT------GTAAACTTTTTAGAACTCAATCAGTCAGCTTCCTGACCCTCCTTGTCTTTCCTTTCTTCTTTCTCTTTTCATTCCCACGGCTGTATTT---------TTATGATGTGCTACAATCATAAGCATTCCATTTGTGGGAAAATTCATCCTCCAGAATTATTAGCAAGATGTTATCAAATCAAATTGGACAATAACTTGCTGTGATGTGA
s HiC_scaffold_1 131183840 1917 + 233722169 ctcCTATACTCATGAATTGCAGGAATAGCAATGTAGCC------ATTACAATGTATAACTGGAGATTTCTGGTGAATATAATGCCACCAACTAATATTGATAGCACCAACACCAAATCAATGTTTCcca----aatattatttatttggtattttaatctgtgttttgAATACTCAAATGGACAATTTTAGCTTCTTTATGAAATT--GAACATCATTTTAGAAAAGAATTCATCACA-AAATGATACACAACTAGGGATCAATAGGAAGAACGATCTTTATTCATCACTATgataaagataattaaaatgaattcattcaaatgataaatataattaataaaatgatgTATTCACAGTTGCTCTACATATTTGTGAAGTGTTTATTTCTACCCAAATATCCTTTCTAGACT-TCTTAATATAATTTTTGTAGTTCAGGACTATAAGGATGA--ATTTAGGAATTCAGAGATACcttttacttatattattttgatttttaaaaccctGTTCTAGGTCTGTTtgaagagtttttcttttttagtatacAAATAGTAGTGCCTAAAATAATACTAACAACTACAACAGACCCTACTACTGACAAGACCAGAATAGAAATATTAACTCCAGAATGATAATTTTTATCAGGACTAGGATTAGGACCACTTTCATCAGGACCACTTTCATCAGGACCAGGATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAA-ATTACATCTAGTTCAGTAACTGTAGAATGTTGTattaaatttctttccatttattcctGAAGACATTCTTTTGTTATAC--------AAAGTAT--ATCGTTGGGCTG--------GAGATATAACTCGGCAgtgcagcacttgccta-gcaagtgtgaggtcttgagttcaatttgcAATacgccaaaaaaacaaaaaaatccaaaagaaacaaacaccaaaccaaaacaaaataaaaaatcaac---------caCCCCAAATATATCCTTATTTCAAAGGTCTTAGTGATTTTTAATAAaagctacattttcatttttaaattctgccAAATGCTACTACCTTAGTATGAAAAGAAGGGCCACGGTAAAATGTGTCATGTTTGATTGATAAA-----AAATTCTGAAGTTAGCAGTATGCAGAACTGTCAG--GTAGGTACTATTCTCCCTTAACTTACTCTTATATCCTTGCTTTAGCAAACAGCATCTTTAACTATATGAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATGGGTCAGTGACTGGAGTATTTGGATACCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTATCTCAGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATCAAATAGTTTCCAGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTTTACAACTCGGTGAAACACTTCCCTTATCtcgtttgact-----------ttttttttgccatatacACAGAAACATTTGGCTAAGTCTTGTGAAATAATATTAAACTTAGGAGACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGGGTAAAAATAGATAACAAATTGCTGTGTCCTGA

a score=7953
s chr3           144911276 290 + 160039680 GAGGGGTGAACATTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAATTGTTTTTGTCGACACTTTCAATGGCAATGAATATGTAGGTTGCATTTTC--TTCTGAGATATTTTCTGGTTTAAAGGCAAAGGTTTCTTTGGAGTTGGCTTCTTTTGGTGTAAGTTTAGTAGTATCAACCCGAAGAGAATTATTAAAATTGTCTCTGAGATCAATGATATTTTCGCTTGTTCTTATGATATACTGTTGAACTGAGAA--AAATGTTATGTGTGGGTTAG---------------TTATTGCATCACAC
s HiC_scaffold_1 130977632 307 + 233722169 GAGGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATT--CTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAACAAACAGTTCAGGTGCATTAAAAGCACTGGGATACCTTATTGCACCACAC

a score=10211
s chr3           144911276 259 + 160039680 GAGGGGTGAACATTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAATTGTTTTTGTCGACACTTTCAATGGCAATGAATATGTAGGTTGCATTTTCTTCTGAGATATTTTCTGGTTTAAAGGCAAAGGTTTCTTTGGAGTTGGCTTCTTTTGGTGTAAGTTTAGTAGTATCAACCCGAAGAGAATTATTAAAATTGTCTCTGAGATCAATGATATTTTCGCTTGTTCTTATGATATACTGTTGAACT---GAGAAAAA
s HiC_scaffold_1 131287921 262 + 233722169 GAGGAATAAACAAAGACACTTGGGCCAAGTTGGATATTTCTGATTCCAGATTAGCCTTATCGACAGCCTTAATAGCAATGAAAAGATTGGTGCCATTTTCAAAGGCAATGTTTTCTGGTTCAAACACAAAGATTTCCTCAGAGTTGGCCTTCTTTGGGATGAGACCAGTTGTGTTCACTTGAACTGAAGCATTGAACTTGTCTCTGAGGTCAAGGACATTTGTACTCATTCGAATGATATACTTGAAAgctaaagaggaaaa

a score=16798
s chr3           144911437 797 + 160039680 AGTTTAGTAGTATCAACCCGAAGAGAATTATTAAAATTGTCTCTGAGATCAATGATATTTTCGCTTGTTCTTATGATATACTGTTGAACTGAG-AAAAATGTTATGTGTGGGTTAGTTATTGCATCACACCATATTAAATTTCTTTCTAGTTAC----CTTAACAAATAGTTTGTCATACTCACATCAAAAGTGTTATTCATTTTTCTGTAAAAGCTGAGTTCTGACTTTATTTATTTATTTATttttgggtttttgagaaagggttgctctgtatagttctggctgtcctgtgaagtctgcctgcttctgcctcccaagtgctgggattaaaggcatgtgccatcattgcccaacCGAGTTCTGACTTTTAAAGACAGCTGTGCAGGA--AAATCAAGACCTGTTTCATAAACTATAAAACATCAGATCCTAAAATTCCTACTTGTCTGAGTTGTCAGTC-ATAAGTCCTCTCCTCTCACTGACCTGTCTGCTCTTGCTTCACCC-----TATCTCTCACTTAGGTCAAACCCACAGGGGTTCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACTGATCAGGCAATGGACCAATTGGAACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATTCTCTAGGACTGGCTGAGTAGCCTCAGTCATTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGCATTTAAAATTCTCTAGTT
s HiC_scaffold_1 131016704 673 + 233722169 AGATCAGTAGTGTTA---CTGAGAGCATC-TCAAAATAGTCTCAGAG--CAAGAACACTCCCACTGATTCTTATGGAATACTGTtgaactaaggaaaaaaaatatgagcAATTTAGGAACTGTAACATACCAT-TTAAATTCCTTTCTATTTACTCTTCTTAA--AATGATGAGTCATAC-------AAAATTGATATTCAT----------------AGCCATACCATTATCTACATGTTGATAGATGA-----------------------TATAAATGTG--------------------------------CCAAATG------------------GCTACCAT-----------------GTTTGTAAGAAAAGTTG----GGACCATGTTAAAATGTATT-----GACTCAAAAGTATCAGATTATGAAATTAATACCTTGCTGCACTGTcaatttaaaagtgttttcctTTCATCTATCCTTACACCTTTACTTTTGCAAGGAATACTTTTCGCTTAT-----AACCATAAAACACTTCACTCTTACCTTTCCCAATATCAAAATCATCTCCTGGTGCTGTCCATGTTAGGTGGATTTCATCCCCATGAAGTGTGGCATCAAGGTCTCTGATTTGGCTAGGTGGATACAGGTCaatgaaggggagaggtggaACTTGTGATACCACAAACACACCTCCAGATACTGTTCTGGTGAAACTCTCCGAGATTGGCTGAGTGTCTTGATTATTTTCAGGTTTCAGTGCATTCTCTTCAATTTTCCCTGCATTGAAAATTC-CTGGTT

a score=5505
s chr3           144911973 243 + 160039680 CTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTACTGATCAGGCAATGG--ACCAATTGGA---ACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATTCTCTAG---GACTGGCTGAGTAGCCTCAGTCATTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGC
s HiC_scaffold_1 130981283 249 + 233722169 CTTACCTTTTCCTTTATCAAGGACATTGCCAGAGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAATTTAGCCTGAAGGTCTGTAATTTTACTGGGTGGGAAC--ACAGGAGTATGGTTACCCTTAGGAGGCGCTCCTGACACAATGAATGACTCTCCCAAGCTTAGTCTGCTGAAGTCCTCCAGTtcaactttttctgcatcttctttgatttcaggtCTGGGCGGGTTCATTATAATTTTGCCTAC

a score=29163
s chr3           144912998 2787 + 160039680 TTCCTCTGTTCATAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCATACTAAAAATACTAGCTGATAGGTTTTCAGCATCTATTGGTTGCCAGGTTTTGATT---GGGTTAACGTTGAAACAATTGTGTAATAATCTCACTCTAGAAATGGGTGTAGTTACATTTTGAACTGTTTGTAGCCTCTACCATATGAAGTCACAAAAAAGGATTCA------CTGGGTTTCTGATACTGGGAGCCACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCT--TGGTAAAAACATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGGTTGGTGTGTGTTGTCACACATGCA-TGGCCTTATATAATGCATAGTCTGTTGCTGTGCTTACAGTTT---CACATTAGAATGGAGTGTATCTCCATCAGTTTCTGCCCAAATAATACATTATTGAATGATGTATTCTTGACTCACTTTGATATATATATTAATACATTATTGAATGATGTATTCTTGACTCACTTTGGtatatatatatatatgtatatatatatatatacatatataCTCATATAACATGATAACCCACACTTATAATTGTGTATGTTTCATAATTACTTTAACATATTATCTCTTTGTGCCCTACCAACTTA----TGCAGATGTCATAAGACTCTTCTTATCATTTCTCTTATAATTGATTGACTTTCAGTTCTCTACATTAATCTTCCCGTGTTATTTTCTGTTTATATATGTGAGGCCCTTCCTGTGGCAAATGT--TTCTTAGGCAAGACTTTATTATCATTATTCCTCATTGATAATGCAATTAACTTATTTTATTTTATGATCAACAACttctgttcctttcttctcttttcttttcttttcttttcttttcttttcttttcttttctttgttttgttttcttttTGTTCTCCAAATCATTTACTACATCTGTAGTTCAACAGAGAAAAGAAACATTTTCCTCTAGGAATAAATGCTTGG-GTATCTAAGAAATGTTGTAGCATAAGTCCTCTCTTACAACGATAAGCATAGGGGGCACCTGATAAGTTG--AAAATGTATTTCC-----------CCATTCTACA-CAGAAG------AGAGAACAATGT-----TCTTGTATCAACCACATCTGTGTCCCTCTAAATATCTGGGGATTGTCAGACATGCAGATTCCCCAGACCACCTAGGGAAGCACCTGAGCAGT--------------CCTTCAAGTGACTCCTCTGTACACAGAAGCATGCAGTGCTGGCC---TCAGCTATCGGCCATCTATTTCTTTTTC-----------------------TTTTTTTCCAGTGAAGGAATTTTAAATTAGTTCGTTCCCCATGATCTA------------ATTGCTTATCTGGTAAT--CTAGTAAAATA--------CCCAGAAATGAAGCAAGGA-------GCATGAAGTTAC--------------ACGCACTGTAG---AAGGGACTGGGAATTGGGGAGAG--ATAGTTGAAGAATTATTGTTGT--------------AATGAGAGAAAACAT-GGAATTCACTCCAAG--------AACAG-----TCAAATATAACTGAAGACAAGTTTGTAGAATGA---CATAAAATGCACTGATGGGTGTCTTTTCTCATTCATGTGTGG----------------GCCAGATTGGCCATTTTATTCACTG-ACTTCCACACAAGGTTCTACCCACAGGAGAACACAGAGTGTAGGGAAAGGGTTTCTGCCCCACCT--CCCTACAGAGCAGAT------ATTACATTTCCTAGTTTCTTGCCAGGCAGAACTGGCATCTGATGCTGCAGTGCCCAGCC--CCAGCTCTGTGCTACTTCTAGCTTCTCCTGGGTCCCTGCTCCCAGGAGTCTATCTATGCTTTGTTCCAGCTATGTGGAATCACCCTTGCTTCCTTCGCTTCAGCTATCAGGGTCCCAGGCTCTGTTGTTCTCTCCCACCCATGAGACAATTCTTGCATCAGCTGCTTTGATAGTACTATTTTGGTGATGCTCCCCTAAGAAGCATGTAACTAGAAGGAAGGCTTGTGTTCTCCATCTTTTGAATGAGCCTGCCTTAGCTGGAGACAGCTATTGCCTGTCGAAATTACAAACATCATTTTGGCagtagctgacatatatagagagcgtaccatgcgtaggacacttactaagcacttt-----gatgtTGTCCAATTGCATTTCCTGCTGGTCTTACTATTCTTTCCTAATCTGTGTTAACTCTTCAGGCACTTGTTCC---------CACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGCAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATAGGAGTGTACCCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGAGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATTGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACG------------CCCACCTAAAATTGTCAATGAAACATGCAGCAAGCATTTAGTGTGCAACGACAtgtttgtttgtttgtttgtttTCC-ATTATGTGATTTTTAAAATAGAGCATAGA----AGAAGAAAAATAACAAAAACAAAATTGGGTGGA---GTGTTCTTAGAAAGGtcttg--tgagactat
s HiC_scaffold_1 131109070 2561 + 233722169 TTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCGTCCAGGTATTCCAAAGTAACAG----AACACAAATGGCCTGAGTACTCACTAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAGG-------AAGTTGTGAAATGAA-GCCCCCTTTGTCATACCAAATTACAAATATTACTCCAGCCAGCACAGGTTTCAGGTAGCATGTGGCACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTCTCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCTAgttgtagaaataaaaaaaaacaaatt--attactgaaaataagacaataaatagATGCGTTTTCTGAGACAGGCATTGGTCTTAGTAAGTGTATCATCCAGTCTGGAGGAAGTATTTTGGGAACAACATTCTGGAGACTATTTCTGTAATGTTCTGATAAAACAATATATTGATG---------------------------------------------------------CCCTTAagttatttttgtatctatatacTTCTACCTATata-----acacatataca-------------------cacacttttGTTTCTGCATTGATAATAGTTAC----ATATCACATCTTTCTATCCTTTATCAATCTGTCCTTTCAGTTGGTA----ACCCCTC-TACCATTTCTCGGCCAGTGGTTTG-CTTACA--TTACAAAATTAATCATGCTGTCTAA------------------AAGGTCTTTACTACAAAAAACCCCATCCTTTGG--AGGATTTACTTTTTTGGGTCCTCA-----AGTAAAAGT-ACTTGTTTTCTCTTAT--TCAGCAATTCCT--------------------------------------------TTTTACTTTCCTGCTCTTATTATCC--------------TCATGCATTAACCTTTTAGCCTGACAGAGCAAAACACCATTTACTACT--GAAGGAACATTTGGAAGAGCTCAGGACTACCGTGAACTGTGT-------------GTCTAGTGTTAGAATCACCTATTAAATTTCCAAGAT-TATTTCCAAGCACATTTACCA-TCTACGTCAGAGGATCTTAAACAAGCAAGGTACAGCACTTAGAGCAGCACTATCTGTATCTCTTAGAA---CTGGAGAGTTTCAAACATGCTAATTTCTCGCACTATGTATGGAAGAACCTCAGAATTATATTTCATCAAAGCCTCCAGATATTTCTTTTACACACTAAAACA-GTAGTGGTGAACATATTGAGTGtgggttatttgtttttcttttaggacaTTTTAATGTATGGcttgttttttctaaacaaaaatgttttcagtgttttccttctaaaataaataagtgagttttggaTTGCAGTTCTGGGAATTATCTGTAAAATGTTCATCATCCCTGTACTAAAgtataaaaatgcctactttaaGCCATTACTAATCACCAAAATCTACTGTAGGGAAAGATATTCCAAATTAAGTAATTTCACAGTTAGACAAGTATTCATATGAAAAAtgccaagaaataaaacaacacacagGAGGTAAGTTTTAGTATTGTGTAACAGTTTTTTCAGACAGG---GAAGAGACAGTTGGGGAAAAAGGCCTTAAGGTTCATCAAAGAACAAGTTGTCACCTGCAGGTGAAGATATGGTTAAAACATAACTGAATCAATTGCATTGTTCACTGAATTTTAACAGAAGTTT-----------------CAGACTCTGGAGCAAGGTCCACTCACTCACACAGATCTGGAAGACAGGTAAGTCCAGCACTGCTCCTTGTTTC-------------CTGGTATCTAATGCCCCTGTGATGAGCCCTCCTCTTTTGTGGCAGTTCTAGCTGTCGCTAGACCTCAGATCTCTGGCCTGTGTTtgta-tttgttcctgattttagaaattaCTTCTGCGTGTCTCCCTTTCCCTGCCAGAGTTCCAGGTTTGG------CCTCCCA-----------------------------------------------------------------------------------------------------------------GCCCCATCTGG-------------------------------------------------------------------TCATGTGGAACATACTTGCTAAGTATGTTTTTGAGATTTTACCCAAAAAAATTTCCTACTGGTCATTGTATTCCTCCATTATCTGTCTGAATTTGTTGAGTTCCTGTGCTACTCTGCAACATTGCAACAGGGATCCAAAACATGCCCTGAATTATAAA-ATATGAGTTGATTCATAAATGTGTGTGAATGACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGCTTGCTTTGGCTTGAAGGTTATAAATCCATGTGAAATGGATTAAATCCACCTGAAATGTTCAATGAAA-AT---ATAAGTATTCACAGTCAAATTATA-------------ACCTGTGATCTGATTATGCAA-TTCTAATATATATCATAGATACTTGGAGAAGAAT-----AAACAGATGTTGATGGATTTgtgattttgtaaaattttcaacTGAGACTGT

a score=30206
s chr3           144912998 2642 + 160039680 TTCCTCTGTTCATAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCATACTAAAAATACTAGCTGATAGGTTTTCAGCATCT-ATTGGTTGCCAGGTTTTGATT---------GGGTTAACGTTGAAACAATTGTGTAATAATCTCACTCTAGAAATGGGTGTAGTTACATTTTGAACTGTTTGTAG------CCTCTACCATATGAAGTCACAAAAAAGGATTCA------CTGGGTTTCTGATACTGGGAGCCACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGGTTGGTGTGTGTTGTCACACATGCA-TGGCCTTATATAATGCATAGTCTGTTGCTGTGCTTACAGTTT---CACATTAGAATGGAGTGTATCTCCATCAGTTTCTGCCCAAATAATACATTATTGAATGATGTATTCTTGACTCACTTTGATATATATATTAATACATTATTGAATGATGTATTCTTGACTCACTTTGGtatatatatatatatgtatatatatatatatacatatataCTCATATAACATGATAACCCACACTTATAATTGTGTATGTTTCATAATTACTTTAACATATTATCTCTTTGTGCCCTACCAACTTAT---------GCAGATGTCATAAGACTCTTCTTATCATTTCTCTTATAATTGATTGACTTTCAGTTCTCTACATTAATCTTCCCGTGTTATTTTCTGTTTATATATGTGAGGCCCTTCCTGTGGCAAATGT--TTCTTAGGCAAGACTTTATTATCATTATTCCTCATTGATAATGCAATTAACTTATTTTATTTTATGATCAACAACttctgttcctttcttctcttttcttttcttttcttttcttttcttttcttttcttttctttgttttgttttcttttTGTTCTCCAAATCATTTACTACATCTGTAGTTCAACAGAGAAAAGAAACATTTTCCTCTAGGAATAAATGCTTGGGTATCTAAGAAAT--GTTGTAGCATAAGTCCTCTCTTACAACGATAAGCATAGGGGGCACCTGATAAGTTG--AAAATGTATTTCC-----------CCATTCTA-------------CACAGAAGAGAGAACAATGTTCTTGTATCAACCACATCTGTGTCCCTCTAAATATCTGGGGATTGTCAGACATGCAGATTCCCCAGACCACCTAGGGAAGCACCTGAGCAGT--------------CCTTCAAGTGACTCCTCTGTACACAGAAGCATGCAGTGCTGGCC---TCAGCTATCGGCCATCTATTTCTTTTTC-----------------------TTTTTTTCCAGTGAAGGAATTTTAAATTAGTTCGTTCCCCATGATCTAATTGCTTATCTGGT---AATCTAGTAAAATACCCAGAAATGAAGCAAGGAGCATGAAGTTACACGCACTGTAGAAGGGACTGGGAATTGGGGAGAGATAGTTGAAG--------AATTA-------TTGTTGTAATGAGAGAAA---ACATGGAATTCACTCCAAGAACAGTCAAATAT--AACTGAAGA-----CAAGTTTGTAGAATGACA---------TAAAATGCACTGATGGGTGTC--TTTTCTCATTCATGTGTGGGCCAGATTG-------GCCATT----TTATTCACTGACTTCCACACAAGGTTCTACCCACAGGAGAA-------------------------------------CACAGAGTGTAGGGAAAGG-----GTTTCTG---------CCCCACCTCCCTACAGAGCAGA--------------TATTACATTTCCTAGTTTCTTGCCAGGCAGAACTGGCATCTGATGCTGCAGTGCCCAGCC--CCAGCTCTGTGCTACTTCTAGCTTCTCCTGGGTCCCTGCTCCCAGGAGTCTATCTATGCTTTGTTCCAGCTATGTGGAATCACCCTTGCTTCCTTCGCTTCAGCTATCAGGGTCCCAGGCTCTGTTGTTCTCTCCCACCCATGAGACAATTCTTGCATCAGCTGCTTTGATAGTACTATTTTGGTGATGCTCCCCTAAGAAGCATGTAACTAGAAGGAAGGCTTGTGTTCTCCATCTTTTGAATGAGCCTGCCTTAGCTGGAGACAGCTATTGCCTGTCGAAATTACAAACATCATTTTGGCagtagctgacatatatagagagcgtaccatgcgtaggacacttactaagcacttt--gatgtTGTCCAATTGCATTTCCTGCTGGTCTTACTATTCTTTCCTAATCTGTGTTAACTCTTCAGGCACTTGTTCC---------CACTGCCCCAGGAAC-----ACATGACACATTTGGAACTATAAACATATAGGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGCAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATAGGAGTGTACCCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGAGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATTGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACGCCCACCTAAAATTGTCAATGAAA
s HiC_scaffold_1 131185743 2438 + 233722169 TTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCATACAGGTGTTCCAAAGTAACAGAAC------ACAAGTGGCCA--ATCTGAGTACTCACAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAGG---ACATCTGTATTGAGTTGTGAAAGGAAGCCCCCTCTGTCATACCAAATTGCAAATGTTACTCCAGCCAGCACAGGTTTCAAGTAGCAAGCGGCACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaacaaatt--attactgaaaataagacaataaacaGATGCATTTTCTGAGACAGGCATTGGTCTTAGTAAGTGTATCATCCAGTCTGGAGGAAGTATTTTGGGAACAACATTCTGGAGACTATTTCTGTAATGTTCTGTTAAAACAATATATTGATG---------------------------------------------------------CCCTTAagttatttttgtatctatatacTTCTACCTATata-----acacatataca-------------------cacacttttGTTTCTGCATTTATAATAGTTAC----ATATCacatctttctgtcctttatcaaTCTGTCCTTTATCAACAGTTG----ATAACTCCTC-TACCATTTCTCAGCCAGTGGTTTG-CTTACA--TTACAAAATTAATCATGCTGTCTAA------------------AAGGTCTTTACTACAAAAAACCCCATCCTTTGG--AGGATTTACCTTTTTGAGTCCTCA-----AGTAAAAGT-ACTTGTTTTCTCTTAT--TCAGCAATTCCT--------------------------------------------TTTTACTTTCCTGCTCTTATTATCC--------------TCATGCATTAACCTTTTAGCCTGACAGAGCAAAACACCATTTACTACT--GAAGGAACATTTGG------AAGAACTCAGGACTACCATGAACTTTGT--------GTCTAGCATTAGAATCTCCTATTAAATTTCCAAGAT-TATTTCCAACCACATTTACCATTCTGTGTCAGACGATCTTAAACAAGCGAG-GTACAGCACTTAGGGCACCAGTATCAGTATCTCTTAGAA---CTGGAGAGTTTCAAACATGCTAATTTCTCACACTATGTATGGAAAAACCTCAGAATTATATTTCACCAAAGCCTCCAGATATTTCTTTTACATACTaaaaca-gtggtggtgaacatatTGAATGtgggttatttgtttttcttttaggacaTTTTAATGTGTGActtgttttttctaaacaaaaatgtttccGGTGTTTTCCCTCTacaataaataagtgagttttgggttgcagttctGCGAATTATCtctaa-------aatgttcatca---tccCTGCACTAAAGTA------------TAAAAAGGCCTACTCTAAGCCATTACTAATCACCCAAATCTACTGTAGGGAAAGACATTCAAAATTAAGTAATTTCACAGTTAGCCAAATATTCATCTGAAAATATTCCAAGATT-TAAAACAACACACAGGAGGTAAGTTTTAGTATTGTGTAACAGTTTTTTCAGACAGGGAAGAGACAGTTGGGGAAAAAGGCATTGAGGTTCTTCAAAGA-------ACAAGTTGTCACCTGCAGGTGAAGATATGGTTAAAACATAACTGAATCAATTGCATTGTTCACTGAATTTTAACAGAAGTTTCAGTCTCTGGAGCAAGGTCCACTCACTCACACAGATCAGGAAGACAGGTAAGTCCAGCACTGCTCCTTGTTTC-------------CTGGTATCTAATGCCCCTGTCATGAGCCCTCCTCTTTTGTGGCAGTTCTAGCTGTTGCTAGACCTCAGATCTCTGGCCTGTGTCtgta-tttgttcctgattttagaaattacttctgctcctctccttttctctgccAGGGTCCCAGG------------------------------------------------------------TTTGG-------CCTCTTAG------------------------------CTCCATC--------------------------------------------------------------TAGCCATATTGGACAT---------------------------ACTTGCTAAGCACTTTGAGATTTTACCTGATAAAATGTCCTACTGGTCCTTGTATTCCTCCATTATCTGTCTGAATTCGTTGAGTTCCTGTGCTATTCTGCAACACTGCAACAgggaccgaaaaaaaaaaaatccctgaactATAAA-ATATGGGTTGACTCATAAAAGTGTGTAAATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAA

a score=11217
s chr3           144913148 299 + 160039680 CTAGAAATGGGTGTAGTTACATTT-TGAACTGTTTGTAGCCTCTACCATATGAAGTCACAAA---------AAAGGATTCACTGGGTTTCTGATACTGGGAGCCACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAATTA
s HiC_scaffold_1 131025021 309 + 233722169 CTAGGgataattttagttttagtaATAAACCTTTTAAAGCATTAATCATATCAGCTCACAAATATTATTCAAGACAACACTCTGAATTTCTGACGTCATGAATTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaaggaagaaatta

a score=5891
s chr3           144913237 208 + 160039680 GAGCCACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGA--TGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAACATAAAGAAAGGAAT
s HiC_scaffold_1 131292088 208 + 233722169 GAATTACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTT--CCCTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCTGGccagggaaatgaaggaaataat

a score=6622
s chr3           144913239 187 + 160039680 GCCACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTGGCAGAGTTTGTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTA
s HiC_scaffold_1 130982021 184 + 233722169 GCTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGT---TGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACA

a score=21519
s chr3           144914898 821 + 160039680 TATCTATGCTTTGTTCCAGCTATGTGGAATCACCCTTGCTTCCTTCGCTTCAGCTATCAGGGTCCCAGGCTCTGTTGTTCTCTCCCACCCATGAGACAATTCTTGCATCAGCTGCTTTGATAGTACTATTTTGGTGATGCTCCCCTA---------AGAAGCATGTAACTAGAAGGAAGGCTTGTGTTCTCCATCTTTTGAATGAGCCTGCCTTAGCTGGAGACAGCTATTGCCTGTCGAAATTACAAACATCATTTTGGCagtagctgacatatatagagagcgtaccatgcgtaggacacttactaagcactttgatgtTGTCCAATTGCATTTCCTGCTGGTCTTACTATTCTTTCCTAATCTGTGTTAACTCTTCAGGCACTTGT---------TCCCACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATAGGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGCAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATAGGAGTGTACCCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGAGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATTGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACGCCCACCTAAAATTGTCAATGAAACATGCAGCAAGCATTTAGTGTGCAACGACAtgtttgtttgtttgtttgtttTCCATTATGTGATTTTTAAAATAGAGCA
s HiC_scaffold_1 131026043 732 + 233722169 TATTTGTACTTTGCTTCAGTT--GTGAAGCTAC---TATATCTCTCCCTTTCCCTGCCAGAGGCCCAGGCTCAAGCATTTTGCCCCATCT----GGCTGCTTGTGCTTTATC--CTCTGCCCAGACTTTTTCTATGATACACCCCTACTCCACCAAATGAGcgtttgttttgaatttttggttCTTTCTTTACTCTCCTGAGTGTGACTGATCTAACTGATGATTGACATTGGCTGT--------------------------------------------------------GTAGG-----------------TGGTGATAATGAATAACATTTATTG-------TGCTATTTGTCCATAATCTGCCTCAATTTTTTTGATGCCTGTCTCTCTGCTTCATATTGTCTCTGGGACCTATAACATATCCCaagttatgaaaatataaatttacttATAAAACTCTGTGAATTACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTGCTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCTAAAATGTGCAGT----------GCAAACATTAAATATCCATTGTCAAATTAATTTCTGTG-----TTCTCATtatac-atttctaaaataaatca

a score=9046
s chr3           144915307 319 + 160039680 TTGGAACTATAAACATATAGGCTTATCCAGAAAAGTCTGTG--GGTTACCTGCACCGTTGTCCAGCAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATAGGAGTGTACCCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGAGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATTGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACGCCCACCTAA
s HiC_scaffold_1 131293407 308 + 233722169 ttggaaaaacaaaaatata---ttttcca----attcTTGGATGGTTACCTGCTCCATTATCCAGTAGTTCCAAGGTGACTGTTTTCCCATTTGCCGATTCAATCACAGCTGTGACCTGGGCCCCGAGAATTGGTGAAGCTCCTTGGTGAATATTTGCATAAACTATCATAGGACTGGGGAATTTGCCTGTGTCCTTGTTCATTTTGGAGGTCACTGTAATCGGAGGCAGGGTAGCACTTGATGCACGTGAGGTGACTGTCAGGGTGAGAGTTTGTGAGCTC------GCTTGCAGACTGTATTTCCAAATGCCAACCTGA

a score=6644
s chr3           144915350 278 + 160039680 TTACCTGCACCGTTGTCCAGCAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATAGGAGTGTACCCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGT-CCGTGTTT------ACCTTAGCATTTACAGAGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATTGTTAGTATCTCTGAGTTT---TCTTTGGCTTCCAGGTTGTAAGTCCAAACGCCCACCTAAAA
s HiC_scaffold_1 130982926 281 + 233722169 TTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGG-------TAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaa

a score=14346
s chr3           144916199 752 + 160039680 ACTGAAGCTGAGACAGACTGGG------ATCCCAGAGAGTGTTATGCATGATATTTGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTCTGGCCTCAGTGTCATATATTCCATGACTATGGCAGGCAGAATTGGAAAAGATGACATGCCAGGTCACCAGGACTCTCCACTTTCTTCCTTCCTGTTCTCAGATGCCTTCTGTTTTCTATCAACCCAAGGCTTCTTTTCCTT-----------TTATAGCTCTCAGGATCACACAGGTAAGGAAAGTACATACATTTCACTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATGTGCTTAGAGCCTCCTT---GCAAGAATATCTTTAGGGGGAAATTCAAATGCTAGCTAGTGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTG---TTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGTAAAACAAACAACCAAACACAAGAAAAGAAAAAAAAACCCTTAATTATTACATAAGACAAAAGTTTTATTCTCTTTTCT-----AGATAATTCCTCATATTTGATCTGAAAACAGT
s HiC_scaffold_1 131152488 676 + 233722169 ACTTAAGTTGTGGAAGTTTGGCTAGTCCACCCCGTTTAGAGTCATACATGGTATATATACTATGTGAAGTATCAACTGGGAAA----------ATAAGTTTGCCTTGGTTGTAGCGTTTTTTGCTCACCTCAGTAACA-ATGT----------------------------------GCATATCGAGCTGCCCATACCCTTCCCATATTTCCTT-----------AAATCTTCCTTTTTCG--CAATACTtagtttgtttttcctgttttttgtcaTTACAACTTTCAGGAC-------ACAAGGAAAGAACGTAGAATTTAATTTCAC-----AGGTGCTGTGATCACTAACATTCAGAGTTATGAAAT-TTAACAGTTTATTTTCAGCATTAAAAAATTCAGAGG-AAGTGTAAA----AGCTGATTGCTTACCTGTGCATGTCCGGGAATAGTGAGATATGCCATTTTGGAGTCATTGTCCTGTTTGAAACCTTCTATCAGTGATCCATTGGGAGCCACAAGAGAAATAGCAGGAGTCTGCTCTTTGGACCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTACCACAGTGTCATTCATCCAGGCGCCAGTGTCCAATGTTAGTCCCTTACTTTCAAgctgtttaaatatattttaaaag-----------------------------ttaacgactatagaaaataataatttaagtaaTGTTTCTTAAAAAGATGATTCTTACTTTCTGGTCTGAAAACAAT

a score=15419
s chr3           144916230 721 + 160039680 AGTGTTATGCATGATATTTGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTCTGGCCTCAGTGTCATATATTCCATGACTATGGCAGGCAGAATTGGAAAAGATGACATGCCAGGTCACCAGGACTCTCCACTTTCTTCCTTCCTGTTCTCAGATGCCTTCTGTTTTCTATCAACCCAAGGCTTCTTTTCCTTTT----------ATAGCTCTCAGGATCACACAGGTAAGGAAAGTACATACATTTCACTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGA----------TGTGCTTAGAGCCTCCTTGCAAGAATATCTTTAGGGGGAAATTCAAATGCTAGCTAGTGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTT---TGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGTAAAACAAACAACCAAACACAAGAAAAGAAAAAAAAACCCTTAATTATTACATAAGACAAAAGTTTTATTCTCTTTTCT-----AGATAATTCCTCATATTTGATCTGAAAACAGT
s HiC_scaffold_1 131077328 642 + 233722169 AGAGTCATACATGGTGTATATACTGTGTGATGTATAAACTGGGAAA----------ATAAATTTGTCTTGGCTGTAGCTTTGTTTGTTGACCTCAGTAGCA-ATGT----------------------------------GCATATCAAGCTGCCCATACCCTTCCCATATTTCcttctta-------attcttcctttttcatGATAGTt--agtttgtttttcctgtttttagtCATTACAACTTTCAGGATCACA------AGGAAAGAACATAGAATTTAATTTCAC-----AGGTGCTGTGATCTTTAACATTCAGAGTTATGAAGTTAAACATTGTATTTTCAGCACT-----AAAAAT-----TCAGAGGAAGTGTAAA----AGCTGATTGCTTACCTGTGCATGTCCGGGAATAGTGAGATAGGCCATTTTGGAGTCATTGTCCTGTTTGAAACCTTCTATCAGTGATCCATTGGGAGCCACGAGAGAAATAGCAGGAGTCTGTGGTGTGGACCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTACCACAGTGTCATTCATCCAGGCGCCAGTGTCCAATGTTAGTCCCTTACTTTCAAgctgtttaaatatattttaaaag-----------------------------ttaatgacTACAGAAAATAATGATTTAAGTCATGTTTCTTAAAAAGATGATTCTTACTTTCTGGTCTGAAAACAAT

a score=15480
s chr3           144916248 706 + 160039680 TGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTCTGGCCTCAGTGTCATATATTCCATGACTATGGCAGGCAGAATTGGAAAAGATGACATGCCAGGTCACCAGGACTCTCCACTTTCTTCCTTCC-----TGTTCTCAGATGCCTTCTGTTTTCTATCAACC----CAAGGCTTCTTTTCCTTTTATAGCTCTCAGGATCACACAGGTAAGGAAAGTACATA-CATTTCACTTTCATTTTGAAGATGGTAAAGTTATT-GTACTCACATTTATGATGT------GCTTAGAGCCTCCTTGCAAGAATATCTTTAGGGGGAAATTCAAATGCTAGCTAGTGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGT-----AAAACAAACAACCAAACACAAGAAAAGAAAAAAAAACCCTTAATTATTACATAAGACAAAAGTT--TTATTCTCTTTTCT-----AGATAATTCCTCATATTTGATCTGAAAACAGTTTT
s HiC_scaffold_1 131111657 663 + 233722169 TGCACTGTGTAACATCTGAACTCGAAAAGTATATTTTTGGAAGTTTGTCTTGATTTTGGTCTTATACTTTGACTTCAA-----------------------------------GAAAAATCTGCACATCAAGTAGCCCAGACTCTTTCCATACCTCCTCACAGAATTATTTTTtgattactt-tgttttctttcctctggtacatgaattttttctcattttcgaA----AGAATTACACAA-TATGGAGAGTACATAGTATTTTGTATTCATTTGACATTTTGTAAGATCATTAGCATTTGCAATTATGACATTAAACAGTTTTCAACTTT-----GAAAATGC-----AGAGCAAGTCTATAAGGTGATTACTTACTCACCTGTGCATCTCCTGGTATGCTGAGAGAGGCCATTTGGGAATCAGTGTCCTGAGTGAAATTTTCTGTCAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGACTGTGTGGT--AGGTGACAAGAAAGAAAGTGTCCTTTCTCACAGTGCTGTCAACTGTCACAGTGTCGTTTATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatatatttaaaaatgaatgaatacagaTAAGACCA-------------------ATTATATGCTAATgaagtttattattcttttttcttttaatgttaacTCTCAATTTATGTTCTGAAAACAAGCTT

a score=16273
s chr3           144916248 706 + 160039680 TGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTCTGGCCTCAGTGTCATATATTCCATGACTATGGCAGGCAGAATTGGAAAAGATGACATGCCAGGTCACCAGGACTCTCCACTTTCTTCCTTCC-----TGTTCTCAGATGCCTTCTGTTTTCTATCA------ACCCAAGGCTTCTTTTCCTTT---TATAGCTCT------CAGGATCACACAGGTAAGGAAAGTACATA-CATTTCACTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATGTGCTTAGAGCCTC----CTTGCAAGAATATCTTTAGGGGGAAATTCAAATGCTAGCTAGTGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGT-----AAAACAAACAACCAAACACAAGAAAAGAAAAAAAAACCCTTAATTATTACATAAGACAAAAGTT--TTATTCTCTTTTCT-----AGATAATTCCTCATATTTGATCTGAAAACAGTTTT
s HiC_scaffold_1 131188339 674 + 233722169 TGCATTGTGTAACATCTgaactcaaaaaatatattttca-aagtttGTCTTGGTTTTGGTCTTTTACTTTGACTTCAA----------------------------------GGAAAATCTG-CACATTAAGTAGCCTAGACTCTTTCTATACCTCTTCACAGAATTATTCTGTGAttacct-tgttttctttcctctggtacatgagatttttctcattttcattatgGTTCTTACTTACAGAATTACACAA-TATGGAAAGTACATAGTATTTTGTATTCACTCAACATGTTGTAAAATCATTGATATTTACAATTATGACAT---TAAACACTTTCAACTTTCAAAA-------TGCAGAGCAAGTC---TACAAGGTGATTACTTACCTGTGCATCTCCTGGTATGCTGAGATAGGCCATTCGCGAATCAGTGTCCTGAGTGAAATTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGTTTAaaggtatttaaaaatgaatgaatacagaTAAGACCA-------------------ATTATATGctaatgaattttattattctttttccttttaatgataACTCTCAATTTATGTTCTAAAAACAAGCTT

a score=15428
s chr3           144916254 700 + 160039680 TTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTCTGGCCTCAGTGTCATATATTCCATGACTATGGCAGGCAGAATTGGAAAAGATGACATGCCAGGTCACCAGGACTCTCCACTTTCTTCCTTCC-----TGTTCTCAGATGCCTTCTGTTTTCTATCA------ACCCAAGGCTTCTTTTCCTTT---TATAGCTCT------CAGGATCACACAGGTAAGGAAAGTACATA-CATTTCACTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATGTGCTTAGAGCCTC----CTTGCAAGAATATCTTTAGGGGGAAATTCAAATGCTAGCTAGTGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGTA--AAACAAACAACCAAACACAAGAAAAGAAAAAAAAACCCTTAATTATTACATAAGACAAAAGTTTTATTCTCTTTTCTA--------GATAATTCCTCATATTTGATCTGAAAACAGTTTT
s HiC_scaffold_1 131238795 667 + 233722169 TTGTAACATCTgaactcaaaaaatatattttca-aagtttGTCTTGGTTTTGGTCTTTTAGTTTGACTTCAA----------------------------------GGAAAATCTG-CACATCAAGTAGCCTAGACTCTTTCTATACCTCTTCACAGAATTATTCTTTGAttacct-tgttttctttcctctggtacatgagatttttctcattttcattatgGTTCTTACTTACAGAATT-CACAA-TATGGAAAGTACATAGTATTTTGTATTCATTCGACATTTTGTAAAATCACTGATATTTACAATTATGACAt---taaacattttcaactttcaaaa-------tgCAGAGCAAGTC---TATAAGGTGATTACTCACCTTTGCATCTCCTGGTATGCTGAGATAGGCCATTCGGGAAACAGTGTCCTGAGTGAAATTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatatatttaaaaaagaat---------gaatacagaTAAGACCAATTATATGcta--------atgaattttattattctttttcgtTTTAATGATAATTCTCAATTTATGTTCTGAAAGCAAGCTT

a score=13502
s chr3           144916469 649 + 160039680 AGGATCACACAGGTAAGGAAAGTACATAC-ATTTCACTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCA--CATTTA-----TGATGTGCTTAGAGCCTCCTTGCAAGAAT--ATCTTTAGGG---GGAAATTCAAATGCTAGCTAG-------TGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGTAAAACAAACAACCAAACACAAGAAAAGAAAAAAAAACCCTTAATTATTACATAAGACAAAAGTTTTATTCTCTTTTCT------AGATAATTCCTCAT-ATTTGATCTGAAAACAGTTTTACCTTTGCTTTCTCCTCACTCCCTCCCTTATACCCCTTCCCTCCGAATAGATTTGCCAACTTTCTGAAGGCTTCTT--GGCTTGTGACAGTTGCAAGGTTGGTAATGCAGACCCTGAAGACAGGACAGGGTAGAAGAGATGATCTAAAGAGGAAACATCAGtgtag
s HiC_scaffold_1 131028981 605 + 233722169 aggataatacataaatgaaaagagCATTCTATTTTATCACAGCTTTGAGCATGGTGCAGTTCTTGGTACTCAGGCAtctaaaaaattatgtttttga------cattaaacaatttatttttatgttctgaaattttaaaagaaatctagaaGATGACTGCTTACCTGTGCTGTTCCTGGAATACTGAGATAGGCCATTCTGGAAGCAGTGTCTTCTGTGAAACTTCCTACCGGTTTTCCACTGGGAGCCCAGAGAGAAACACTGGGAGGCTGTTTTTCCCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTATCACAGTGCCATTCATCCAGGGATCATTGTTCAGGGTTAACCCCTTACTTTCAAGCtgt-------------------ttaaacacattttaaaaa----------ttaatgactgCAGAAGGAAAtcatttcactctttttttcttttaaagattgtTCTCAATAATCTGGCCTGAGAGCAAGCATGCATGTG-----------------GCATAAGACCC------------TAGGGCTGTGATCTCTCTGAAAATTGATTGAGACTTGAGACTTGTCACAGTGTAGAAATGTGGGGCCTAAATAAAGATCagtgtaata----------aaaaagaaagcattagaaTAG

a score=7517
s chr3           144916583 265 + 160039680 GGGAAATTCAAATGCTAGCTAGTGGCTTACCTCAGCTGTTCCTGGGATACTGAGATAGGCCATTTTGGAAACAAAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCT--TGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCACGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTATTCAGTATGGCACCCTTACTTTCAAGCTGTAGAAATGTAAAACAA
s HiC_scaffold_1 131294247 257 + 233722169 ggaaaaagaaaatcctgaCT----TCGTACCTTAGCGATGTCTGGGACCTGGAGGTAGGCCATTTTGCTGGCTGCATCCACTACGAAACCATTCTGCCTTGTTCCACTGGGATCCCAGAGAAAGAT--TTGGGGCTGCTGATTTGTCCATGTGATAAGGAACAATGTGTCCTTTCCTACTGTGTCATCCACAATCACTGTGCCATTCATCCACTGGCGGTTCTGGAGGGTTGCTCCTCTACTCTCCAGCTGTTAAG----AAAACAA

a score=9095
s chr3           144919198 348 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAAAATCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGTATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAATTATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGCTCTTATTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAgggaaaggatctttacctaccctaaatcagataggggactaatatccaatatatataaag--aactcaagaaggtagactccagaaaatcatataacc
s HiC_scaffold_1 131191772 337 + 233722169 TTTTCGTGTCTCTGGTAAATGCAAACACAAA---CCTACCGCTGTGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCCTTATCTGAAGCcaattcctcctttcctcctaaAATGGAAATGCACAAGCAAAgttaatttctagaaaataagTGCTTAC--ACATTTAGTGATTAATAAAGCAAAGGTTTAAAGAAAGTCACAG-TTTTCACATGTCCTA----TTAAAGCAGACCAGTGTCAGATAGCTGTAAGATTAATTCTGAAATgctaattt---aaaataagataacc

a score=8742
s chr3           144919198 348 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAAAATCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGTATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAATTATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGCTCTTATTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAggg-aaaggatctttacctaccctaaatcagataggggactaatatccaatatatataaag--aactcaagaaggtagactccagaaaatcatataacc
s HiC_scaffold_1 131242198 337 + 233722169 TTTTCGTGTCTATGGTAAATGCAAACACAAA---CCTACCGCTGTGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCGTTATCTGAAGCATAATAGTGATTTCCTCCTAAAATGTAAAAGCGCAAGCAAGgttaatttctagaaaataagTGCTTAC--ACATTTAGTGATTAATAAGGCAAAAGTGTAATGAAAGTCACAGTTTCCACATGTACTATTAA------AGCAGACCAGTGTCAGATAGCTGTAAGATTAATTCTGAAATgctaattt---aaaataagataacc

a score=8763
s chr3           144919198 348 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAAAATCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGTATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAATTATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGCTCTTATTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAgggaaaggatctttacctacc-ctaaatcagataggggactaatatccaatatatataaag--aactcaagaaggtagactccagaaaatcatataacc
s HiC_scaffold_1 131078522 336 + 233722169 TTTTTGTGGTTATGGTAAATGCAAACACAACTCCCCCGCTGTTGG---AGCTCTCACCTGAATGGACTTCTGACTGAGACCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTGAGCCTTATCTGAAGCAGAAAATTCATTTCCTCCTAAAATGTAAATGTGCAAGTAAGGATAATTTCTAGAAAATAAGTGCTTAC--ACATTTAGTGATTAATAAGGCAAAGTTTAATGAAACTCATAGTTTCTACATGTACCATTAAAACA-------GACCAATGTCAGATAGCTGTAAGATTAATTCTAAAAtgctaattt---aaaataatgtaacc

a score=9510
s chr3           144919198 348 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAAAATCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGTATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAATTATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGCTCTTATTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAgggaaaggatctttacctacc-ctaaatcagataggggactaatatccaatatatataaagaactcaagaaggtagactccagaaaatcatataacc
s HiC_scaffold_1 131153767 335 + 233722169 TTTTCGTGGTTATGGTAAATGCAAACACAAACCTCCCGCTGTTGG---AGCTCTCACCTGAATGGACTTCTGAGTGAGATCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTCCACAGCGTTATCTAAAGCCAATTCCTGTTTTCCTCCTAAAATGTAAATGCACAAGCGAGgttaatttctagaaaataagTGCTTAC--ACATTTAGTGATTAATAAGGCAAAAGTTT-AATGAAAGTCAGCTTCCACATGTACTATTAAAGCAGATCAGTGTCAGATAGC-----TGTAAGATTAATTCTGAAATGCTAATTT---AAAGTCACGTAACC

a score=7349
s chr3           144919199 250 + 160039680 TTCCTTGGTTATGGA-AAAGGCAACCACAAAATCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGTATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAATTATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGCT-CTTATTATAATTTAATGATTAACAGTGTAACAGTTCAAATA
s HiC_scaffold_1 131030754 249 + 233722169 tttcttatttatggCTAAATGCATAGTTGAAAGCCCAAGGAGTG--AAAGCTCTGACCTGAAAGGATCCCTGGGAGAGATGAGCATTTCCTAATCCAAAGGGCCTGAAAGCATCAGTGAGACTGTTCCTGTAGGCTTGATCTGAAGCATAATAATGTTTTCCTCCTAAAATGTAAATCCATTAACAAAGTCACTTTCTCAAA-AGCAGCTATTTATCACATTTTAATGACTTATAAGGTAACAATATAAACA

a score=5369
s chr3           144919236 292 + 160039680 GGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGTATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAATTATGAATGAAT-ATGCTCCATTGTTTTGTAGAACAACAGCTCTTATTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAgggaaa----ggatctttacctaccctaaatcagataggggactaatatccaatatatataaa---gaactcaagaaggtagact
s HiC_scaffold_1 131295996 293 + 233722169 GAGGAGGAAAAACTCCTACCTGGATGGAGCGCTGAGCGATGGCGCCATTTCCTGAGGAAAGGGCCCCAAAAGCATCAATGAGGCCATTGTTTTGAGCCTGATCAGAAGCATATGTCTGCAAACCTCCTAAAATGCAATTACATCATCAGAAGTTATTTTCCAGACAGCAAGTGTTCACAACACTTTAGCTGTTGCTAAAATGAtggaatacataaaataaatatcgcatttttattaaagtaaaaacaGAT-------CAACATCAAATGTATGTGCACATAAACTCAGAAGTGAatact

a score=9453
s chr3           144921497 607 + 160039680 TTCAAGCCCTGTCTTGGGAGCCATTTGATTCCATATAACTCCTTTCCTCTCCTTCCCCACTACAACATTTTGGGAGCATAGAAGGCTTGTAAGTCTCAATTA-AATTTTATTTT-GTATTCT----TCCTGTTATGAAGAAATGTGATCTATGTGTTTAAATTTGCTGCC-----TTATGTGTCTTTTCCAGCCAACTGGAAAGAGAATGTGATGAGAACAGAGGTTGGGTCTGTTTGACTCTGTTCTCCAATCCTTGACTTGGCTCTTGCA-AAGTTGAGCTTAGAAGTAGTTGAACATCAG-CTCTACATTTATACACAACAACTGAAAGTCTGAGA-TGTAGAGATGATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATACCATTATCATATCATACTAGATTAGCTGTCCTGATGGAAAGTTAGAAAAAATAAACTATAGAA
s HiC_scaffold_1 131031938 560 + 233722169 TTCAAATCCCAGCTCAGAAGTCACCTCATTTCTGTTACCTTCTGTCCCTTACT------CTGTACAGTCGTGGGAAAATTGATGGCTTCCTCTGCTCACATACAACTTTATTCTCATATACTGTATTCCTCTTGTGAAggaattttgtttcattattttattatgtgactagcaattttattcatttttcaccTTGTGGGACTGTGAGCACCATGAAAATGGAGA-----------------------------------------CCTGCACAGGTGGAGCTCAAGAAAATTTG----TCAGGTTCTATGTTCATGTATTGC--CT-----TCAGAGAATATATGGATCATAATTTACCTGTTATACTGCTCATCACACTTAGTATGGGATCAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCCTTCTATTTGATGATGTTTTTCCTTAATTACCTACAAACAGAATTCAGGA---CATTATCAGTTGTTCCTCGATTGAATGGACAGATGAggaattagaaaaaagagaaaataaaa

a score=12780
s chr3           144921586 521 + 160039680 TAAGTCTCAATTAAATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGT-GATCTATGTGTTTAAATTTGCTGCCTTATGTGTCTTTTCCAGCCAACTGGA------AAGAGAATGTGATGAGAACAGAGGTTGGGTC-TGTTTGACTCTGTTCTCCAATCCTTGACTTGGCTCTTGCAAAGT-TGAGCTTAGAAGTAGTTGAACA----TCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATGATGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATACCATTATCATATCATACTAGATTAGCTGTCCTGATGGAAAGTTAGAAAAA-AT-AAACTATAGAAAAA
s HiC_scaffold_1 131154423 525 + 233722169 taaatcagaaacaaagtACAAACTATATTCCTA-TGTTAGGAAGAATTGTCTGGTTATGTGATTTAATTagcag--ttttcttttgtttccatacAACTCGACTCTCCAAG----TACCCTGAGAACAGAGATTGTGTCAGGTTTGACTCTGGTCTCCTGTCCCTGGCACACCACCCTCAGAGCAGGAGCTCAAGAGAAGGTGCACAGCTGTCAGCCCAGACAGTATCACAGTCCTATCCGAAGCCCGGAAtgtatagaaaacattttaaccTGTTTCAATGCTCATCTGTGTGACTACTGGCTCTGCAGATTGTCCCAGAGCAATAAAATGAACGATGACCCCGCTTTCTTTCACTGAATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACGTATTTCAGG--CACATTA----ACCACTGTAGATCAAACAGATCAATGGGAAAATagacaaatatgaaaataaagaaaaa

a score=12280
s chr3           144921594 521 + 160039680 AATTAAATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGTGATCT----ATGTGTTTAAATTTGCTGCCTTATGTGTCTTTTCCAGCCAACTGGAAAGAGAATGTGATGAGAACAGAGGTTGGGTCTG-TTTGACTCTGTTCTCCAATCCTTGACTTGGCTCTTGCAAAGT-TGAGCTTAGAAGTAGTTGAAC----ATCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATGATGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATACCATTATCATATCATACTAGATTAGCTGTCCTGATGGAAAGTTAGAAAAAATAAACTATAGAAAAAGTATAGAA
s HiC_scaffold_1 131079057 500 + 233722169 aattaa----taaTCTATATTTCTA-TGTTATAAAGAAATATTGTCTGGTTATGTGATTTAattagcagttttgttttctttctcca---------------agTTCCCCGAGAACAGAGATTGTGCCTGGTTTGATTCTGGTCTCCAGTTCCTGGTACAGCATTCTCAGAGCAGGAGCACAAGAGAAGGTGCACTGCTGTCAGCCCAGACAGTAACACAGTCCTATCCGGAGCccagaaaggatagaaaacacTTTAACCTGTTTCAATGCTCATCTGTGTGACTGCTGGATCCGCAGATGGTCCCAAGGCAATAAAATGAATGACGATCCCGCTTTCTTTCACTTTATTAACACAATTGCTTGCACCGTTGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAATGTATTCAGGCACATTA-------AGCACTGTAGGTCAAACAGATCATTGGGAAAGTAgacaaa------tatgaagaaaataaagaa

a score=14104
s chr3           144921599 560 + 160039680 AATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGT-GATCTATGTGTTTAAATTTGCTGCCTTATGTGTCTTTTCCAGCCAACTGGAAAGAGAATGTGATGAGAACA-GAGGTTGGGTC-TGTTTGACTCTGTTCTCCAATCCTTGACTTGGCTCTTGCAAAGTTGA-GCTTAGAAGTAGTTGAACA----TCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATGATGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATACCATTATCATATCATACTAGATTAGCTGTCCTGATGGAAAGTTAGAAAA-----AATAAACTATAGAAAAA-GTATAGAATAG-AGATAATTTCTGTTTTAGAATCATGGAGTTTATGTTCAATA
s HiC_scaffold_1 131116596 563 + 233722169 AGTGTTAATCTATATTCCTA-TGTTATGAAGAACTGTCTGGGTATGTGATTTAATTAGCAGTTTC---TATTCTTTCCATACAAGTCGGCTCCAAGTACCCTGAGAACACGAGATTGTGTCAGGTTTGACTCTGGTCTCCTGTCCCTGGCACAGCACCCTCAGAGCAGAAGCTCAAGAGAAGGTGCACAGCTGTCAGCCCAGACAGTATCACAGTCCTATCCGAAGCCCGGAAtgtatagaaaacattttaaccTGTTTCAATGCTCATCTGTGTGATTACTGGCTCTGCAGATTGTCCCAGAGCAATAAAATGAATGATGACCCCGCTTTCTTTCACTTCATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACGTATTTCAGG--CACATTA----ACCGCTGTAGATCAAACAGATCAATGGAAG--TagacaaatattaagaaaataaagaaaaatatgtagaGTAGAAGAGAATCTTTGGTTTAAAGTCA--GAATCTACAATCaata

a score=14064
s chr3           144921599 520 + 160039680 AATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGTGATCT----ATGTGTTTAAATTTGCTGCCTTATGTGTCTTTTCCAGCCAACTGGAAAGAGAATGTGATGAGAACAGAGGTTGGGTCTGT-TTGACTCTGTTCTCCAATCCTTGACTTGGCTCTTGCAAAGT-TGAGCTTAGAAGTAGTTGAACA----TCAGCTC---------TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATGATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATACCATTATCAT-----ATCATACTAGATTAGCTGTCCTGATGGAAAGTTAGAAAAAATAAACTATAGAAAAAGTATAGAATAGA
s HiC_scaffold_1 131242752 525 + 233722169 AGTGCTAATCTATATTCTT------AAGAAGAAGTGTTGTCTGGTGATGTGATTTAATtagcag--ttttcttttctttccatacaATTTGGCACCAAGTATCCTGAGGACAGAGATTGTGTCTGGGTTGACTCTGGTCTCCTGTCCCTGGCACAGTATTCTCAGAGCAGGAGTTCAAGAGAAGGTGCACAGCTGTCAACCCAGAGATTAACGCCTTCTTACACAA--------AgcctaaaatgtataaaaatattttaacctgTTTGGTTGCTCATCTGTGTCACTGCTGGATCTGCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAACATTTTTCAG-GCACAGTTAGCACTGTAGGTCACAC-AGATCAA-TGAGCAAACAGACAAAtacagagaacagaaagaaaaaaacacgtAGAGTAGA

a score=12456
s chr3           144921604 555 + 160039680 TATTTTGTATTCTTCCTGTTATGAAGAAATGTGATCT----ATGTGTTTAAATTTGCTGCCTTATGTGTCTTTTCCAGCCAACTGGAAAGAGAATGTGATGAGAACAGAGGTTGGGTCTGT-TTGACTCTGTTCTCCAATCCTTGACTTGGCTCTTGCAAAGT-TGAGCTTAGAAGTAGTTGAACA----TCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATGATGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATACCATTATCAT-----ATCATACTAGATTAGCTGTCCTGATGGAAAGTTAGAAAAAATAAACTATAGAAAAA---GTATAGAAT---AGAGATAATTTCTGTTTTAGAATCATGGAGTTTATGTTCAATA
s HiC_scaffold_1 131192457 564 + 233722169 taatcTATATTCTT------AAGAAGAAGTGTTGTCTGGTTATGTGATTTAATtagcag--ttttcttttctttccatacaATTCAGCACCAAGTACCTTCAGGACAGAGATTGTGTCTGGGTTGACTATGGTCTCCTGTCCCTGGCACAGCATCCTCAGAGCAGGAGCTCAAGAGAAGGTGCACAGCTGTCAACCCAGAGATTAACGCCTTCTTACCCAAAGCctagaatgtataaaaatattttaacctgTTTGGTTCCTCATCTGTGTGACTGCTGGATCTGCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAACATTTTTCAG-GCACAGTTAGCACTGTGAGTCATAC-AGATCAA-TGAGCAAACAGACAAAtacagagaacagaaagaaaaaaaaaacatgtagagTAGAAGAGAGCACCTTTGTTATAAAGTCA--GAATCTAGAATCAACA

a score=6328
s chr3           144921877 164 + 160039680 GCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCGTCAATACAGTCTTTGGCTGTGCTGTCCTCCCCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTTAGAATA
s HiC_scaffold_1 131297816 161 + 233722169 gcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCCATCTGTTGGATACTTT---TTCTTGATCACCTAAGGACATGATTCAGGACA

a score=11817
s chr3           144922627 674 + 160039680 CTGTGTGT-TTTGTCTAGAACCTCTTAAGATTAGTTATGCTAAAATCAAGAGACAAGTAAGAACAGTAGAACTTCACTT-----TGTTCTAAAAACAAAACTAAGATCAAAATACA------TGTGCAGTGGGATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAATGAGTGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGGGTTTATTGACAAGAACTGGATAATTATTAATTTGTACCTATGGAAGAAAGCAATTATAATTTTATCTGGCAAATTAATAAGTGTGGTTATAAGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGTTAAGTAACCAAGTTAAAGGTGGGGCTTG-----------GGTTGAAGCTAAG--GCAATGATTCACACCTTAGCACCACTGTTAACCCCATAATCACTCCT
s HiC_scaffold_1 131032498 623 + 233722169 ctatatgtGCCTGTccatgtgcttttaaaaatattt----taaaatgcaga---aagtaTTTGCAGTAGCAATTAACATAGAAATGTCct-----taaaattaaga--aagataGACTATTTTTTGCAGAACAATTTTTACCTGAAGAGCAGATTCGATTCCAGAGCAGATAGAAATTCCTCCTGAAGCTTCTGTAGGTAAGCTCTCTAgaagttttcttctttcattgtAGCTAGTTACTTGGACTAGCTTACTTTTGATGTGAGCGGTACTATCATAAGCAACTATTCCCACCCAGGAACCATTTTCAACAGTTTGAAGCAGGAAAATTTTAGCTGCTTGGTTCATTCGATTTAGCCGGTTTAAATCCTAAATGGTGAATCACAAGAAAACAGACCAAATAGTTTTGCCTGAAGGGTAACAGCAGATCATATAAAGTATGGCAAGACTTTG------------GTATAAACAGTAATT----------AAAGGAAACAAT--------------------------------------GTATTATGGAGCACACATAGTTTAGCAAGGAGCTCATGCTTTTAT--TAACGGTAACTCTTGGCTGCTAAGTACCCAAATTAGTGATAGGAATAGAAGAAAGAGCAGATTGGAATTGGGGAGTGGCAGTTCATATCTTAGA---------GATTCTATAATCACTCCT

a score=7102
s chr3           144922711 301 + 160039680 AAAAACAAAACTAAGAT---CAAAATACATGTGCAGTGGGATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCA-TGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAAT
s HiC_scaffold_1 131300571 304 + 233722169 AAAAACATGGCAAACACTGGCAAACCACAATAGCAGAGCATATCTCACAGTAAATGCTGATTGAAGGCCGGAGCAGATGGATGTCCCTCCTGAAGAAACTGTTGGTAAGTGTTTGGTGAGTGCATCTCTGTCTGCATCACTCTTTATCTGGACAAGTTCACTTCGTACTTG-GGCGCTACCGTCAAATGTTACCAGCCCAACCCAGGACCTGTCCTCCACCGTCTGCAGCAGGAAAAACTTGGCCGCTTGATTCATGCGGTCAAGGCGGTTATCACTCTGGATGgacaagcaaaagaaaagcaat

a score=9431
s chr3           144922747 331 + 160039680 GATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAATGAGTGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGGGTT-TATTGACAAGAA
s HiC_scaffold_1 131156833 331 + 233722169 GACTTTTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGTATCTCTTTCGCTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATTCGAGTGAGGCGTTTATCAAGctgaataaaaagcaa-aagaaaacaaccaattaATTTTCGGTTGGAAGGtaataacatcacacataatgaGTACATAAGACTGTCTTAACATGAA

a score=12661
s chr3           144922747 705 + 160039680 GATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAATGAGTGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGGGTTTATTGACAAGAACTG---GATAATTATTAATTTGTACCTATGGAAGAAAGCAATTATAA-----TTTTATCTGGCAA-ATTAATAAGTGTGGTTATAAGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGTTAAGTAACCAAGTTA-----------AAGGTGGGGCTTGGGTTGAAGCTAAG-GCAATGATTCAC-----------ACCTTAGCACCACTGTTAACCCCATAATCACTCCTGTTAATATAAACTTGTCACCCAGGTT-----TGAGTCAACCAGACTCTCTTGGTCTCCAAGCATAGCTGAGC-TGTGTAGCTCAGCAAGG----------------------AGCCTGCTGAG-TGACCATTACCTCTGAGAAGGCCA---CCTACTCTGCCC-----CTTCTACTTTTAACCTTTCC
s HiC_scaffold_1 131118545 754 + 233722169 GATTTTCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTTTTTCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCGGcta----------tcaaaaagcaaaagaaaacaaccaagtAGTTTTCAACTGGAAGATAATAGCATCACACATAATGAGTATATA-CATTTACCAATAAGAATTTTTCAATAATAACTA--------CTATGACTGATaaaaattgttctcttttttcaacTGATAATGTTGAAAAATATGACTGT--GTATTATGGGACACGCATGGTTTAGTaaggagtttatatttttaaactagaGATGATTACTGGCTGCTAAATACTGCAGTTAGAGATTGAAGGAAGATGGAGATTGAGTTAAAAATGTGCATGATGATTCACCAGGTGGAGATGCTTCAGTGACACTGTTAG-CCTATATGCCATCTACCTCAGATAAA---GTCACCAATGTTCACCATGAATCA---AGAATATTTTAGAGTTC-ATCAGAGTTGAACTTGCTTCATTCACTGAGGACTACTTTTCCCCAAGTGGAAAACTTTCCTGAGCTGAGATTAAATTCTGAGAACCCCATTCCCTACCCTGGCCTTTGTTTTCTCCTCTTAACTCTTCC

a score=13260
s chr3           144922747 750 + 160039680 GATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAATGAGTGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGGGTTTATTGACAAGAACTGGATAATTATTAATTTGTACCTATGGAAGAAAGCA-ATTATAATTTTATCTGGCAAATTA-ATAAGTGTGGTTATAAGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGTTAAGTAACCAAGTTAA-----------AGGTGGGGCTTGGGTTGAAGCTAAG-GCAATGATTCAC-----------ACCTTAGCACCACTGTTAACCCCATAATCACTCCTGTTA----ATATAAACTTGTCACCCAGGTT-----TGAGTCAACCAGACTCTCTTGGTCTCCAAGCATAGCTGAGC-TGTGTAGCTCAGCAAGGAGCCTGCT-------GAGTGACCA--TTACC----------------TCTGAGAAGGCCA---CCTACTCTGCCC-----CTTCTACTTTTAAC-CTTTCCTGTGATTC-TCTGTCAGTGGGGCAACTGCATTGGCTTTCTTGTGAC
s HiC_scaffold_1 131194398 804 + 233722169 GATTTTCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATTCGAATGAGGCGGCTACCAGCCTGAATGAAAAGCGA-AAGAAAACAACCAAGTAGTTTTCAACTGGAAGATAACAGCATCACACATAGTGAGTATATA-CATGTACCGATAAGAATTTTTCAA-TAGTAACTGCTATGACTGGTAAAAATTGTCCTCTTCTTTCAACTGATAATGTAGAAAAATATGACTGT--GTATTATGGGACACGCACTGTTTAGTAAGGAGTTTATAA------ACTAGAGATGATTACTGGCTGATAAATACTGTAGTTAGACTTTGAAGGCAGATGGAGATTGAGTGAAAAATATGAATTATGGTTCACCAGGTGGAGATGCTTCAGTGACACTGTTAGCCTA-----TACGCCAGCTATCTCAGATAAA---GTCACCAATGTTCACCACGAATCA---AGACTATTTTAGAGTTC-ATCAGAGTTGAACTTGCTTCATTCACTGAGGA--CTACTTTTCCCCAAGTGGAAAACTTACCTGAGCTGAGATTAAATTCTGAGAGCCCCATTCCCTACACTGGCCTTTGTCTTCTCCTCTTAACTCTTCCCCACAATTTATTCACCAGTgatttgattggaattgcactttTGTAAC

a score=12856
s chr3           144922747 331 + 160039680 GATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAATGAGTGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGGGTTTATTGACAAGAA
s HiC_scaffold_1 131081410 331 + 233722169 GATTTTTACCTCAAATGCTTTTTCAATCCCAAGGCAGATGGAAGTTCCTCCGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCACTGTTGCTTCTTATTTGTATTAGCTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATCCCTACCCAGGACCCATTTTCCACAATCTGCTGCAGGAAAAGTTTTGCTGCTTGATTCATTCGATTCAGCCGGTCACTGCCctgaatgaaaaagtaaaagaaacccACTAAGTAGTTTTGAACTTGAAGATAATAGCATCACCCCTAATGAGTATAAAGAGTGTCTTAACATGAA

a score=13334
s chr3           144922748 749 + 160039680 ATTTTCACCTGAAATGCAGTCTTGATTCCAGAGCAGATGGACGTCCCTCCAATGGCACTTGTAGGTAAAGTTTGCAAGAGCTTGTTTCTCTCGATGTCACTGTTCATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCTATTCAGACGGTCAGAAGACTGAGTGAAAAATGATAAGAAAAGAAATGAGTGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGGGTTTATTGACAAGAACTGGATAATTATTAATTTGTACCTATGGAAGAAAGCAATTATAA-----TTTTATCTGGCAAATTA-ATAAGTGTGGTTATAAGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGTTAAGTAACCAAGTTA-----------AAGGTGGGGCTTGGGTTGAAGCTAAG-GCAATGATTCACA-----------CCTTAGCACCACTGTTAACCCCATAATCACTCCTGTTAATATAAACTTGTCACCCAGGTT-----TGAGTCAACCAGACTCTCTTGGTCTCCAAGCATAGCTGAGC-TGTGTAGCTCAGCAAGG---------------------AGCCTG-CTGAG-TGACCATTACCTCTGAGAAGGCCA---CCTACTCTGCCC-----CTTCTACTTTTAA-CCTTTCCTGTGATTC-TCTGTCAGTGGGGCAACTGCATTGGCTTTCTTGTGAC
s HiC_scaffold_1 131244753 803 + 233722169 ATTTTCACCTCAAATGCTTTTGCAATCCCACTGCAGATGGAAGTTCCTCCGTTAGCATATGTAGGCAAGCTCTTCACTAGGGTGTCTCTTTCAGTATTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAATTTTGCTGCTTGATTCATTCGAGTGAGGCGGCTACCAGCCTGAATGAAAAGCGA-AAGAAAACAACCAAGTAGTTTTCAACTGGAAGATAACAGCATCACACATAATGagtatata-catgtaccaataaGAATTTTTCAATAATAACTG-----CTATGACTGGTAAAAATTGTCCTCTCTTTTCAACTGATAATGTAGAAAAATATGACTGT--GCATTATGGGACATGCACCATTTAGTAAGGAGTTAATAA------ACTAGAGATGATTACCGGCTGCTAAATACTGCAGTTAGAGATTGAAGGAAGATGGAGATTGAGTTAAAAATGTGCATGATGATTCACAAGGTGGAGATGCTTTAGTGACACTGTTAG-CCTATATGCCAGCTATCTCAGATGAA---GTCACCAATGTTCACCACGAATCA---AGAATATTTTAGAGTTC-ATCAGAGTTGAACTTGCTTCATTCACTGAGGTCTACTTTACCCCAAGTGGAAAACTTGCCTGAGCTGAGGCTAAATTCTGAGAACCCCATTCCCTACCCTGGCCTTTGTCTTCTCCTCTTAATTCTTCCCCACAATTTATTCACCAGTgatttgattggaattgcacttcTGTAAC

a score=40840
s chr3           144924071 2783 + 160039680 ccatcacaccATTTT-TTTTTAAACACAAATCTACCAGGACCCTATCTGGGGTACTCTATTCATCTCTCAATGGGCAGTCTCTTCTCTCCTCAGTGACATTTCTTGGGCTACCTGTGTGTAGTGATTTTG--AATGTTCTGTCTTCCATGAAATCCCATGCCACTGTGGCTCACCTTGTCAGTCCCTGCCATTCTTTGCCCTTT-CAATAG-CAACTTTCCCTTCCTTGCTGATGCTTTAATTTCTG--CCTTAGCATG-CCTGTCCCACCACACAGTGCAGTCA-----CTCAGTGCTTTCTCACATAACACCTGCTTGTTTGTAGTTCATATTCACTTTAGCAGCTTCCTATTGGTCACAAATATATTATGTTCTCTG-------------GATCTCAAA-------------AGCTTCTAGTTCTGAGTGAAACTC--AGTCTGGTCTGGAGAGGCACAGGCAGTATCAGTAAAATACACAGAACCAGAGATATGCAAAAGGGAGTTTTGGCA-TTGGCAAAAGATGAGCTCCTATACAGCACCTCTAGAGCCCAGCCCTTCTCTTAGTGAAAATGTGTGTCTCTACTAAATTGTAGAGGACAGGAATTATTTACTTAGGTA--GGTGAAGCTGAGACATAG----------------AGAAAAAAAACACATTTCT-----------------------------------------------------TAACTGTTACTATATCTACTTT--------------TTTGGtttatttt-----ataagaaagggtcat-----------actatgcaacccaactgactttgaacttgcctagtctcccaaatgctaggattacaagaacatacttccattgctcaTCCT-----------TGATA------AACTATAAATTTCTCAAGTA----------------CAtttct--------ttttttttttttttttttttttttttttttttttttaaagatttat------------------------tttattattatatgtaag-------tacactgtagctg------------tcttcagacac---------accagaagaggga--gtcagatcttg---------ttacggatggttgtga--------gccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagccccCTCAAGTACATTTCTATACTCAAAATAAAAACAAAAACAAACAAACGTAAAAGAGCCCA-GGAACTTACACTCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGTGGTGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAATTGTAGAAAATTACTATTTCATGTATTAAAAAATGACCTGGAAAACAAAGCAAAAGTATGTCCTGTGTTAGAAATTAAaagtaattatgctgacctagcaaagtggctatagttgatactttgctaTGAATGTATGTAACAATAGCTATCAAAGAAAAAGTGGTTGTTGAGAGTGGGGGTGGGGGCTCAGGAGTGGTCTGAAGGAGGCTATCTGGGAGGGTTGAACTTTAATTGAAAACACAGTTTTTTAAAAAAAATTAAAGGAGCATATGTATAGTATTTAGCAAATATGCATGCTCAAGTAAAATACTGTTAACACTAAAGTAGACTTATCATTGTAATACTTAATAATTATCTAGCTATTAAAAGACAATAGTGTTAATGTACAATAGAGGATGAAAAATTACTGCATGTCAATCAATGTTCAATGAATTCTATATTAACATATTTAATCTTCATGTCAT---GCTTAACATCT--------------GTAATACCTCAGGTATAACACTT---------------GCCTAGCAATGTGTAGTTTTTAAATTTTATTTtcatcatcaccatcatcatcatcatGGTTATTTTAAAATCAATGATATTAGACAAATCCTTTGATTATAGATTCTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCTGTGGAGCACCTGAAAATATGGAAGTGAATCCAATAGAAAACTTAGTCATT----CTTTTGAAAAGT----GGTCCTGCTCCCACTGAGCTTTGTGGCACGATATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGGCTCTCCACTGGGATGAAA---GCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGCTGGCCTTGGAC---CAACTCTCTGTAGACACTTGGTTGACAAAACC-AGTGGACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTTCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG-----------TGTGCTGTTCCATGGGAGA---GTCATAGCCGGCAGTGATCAGAACAGATACACTAGACTTTAGCCACAGCTCA---TCCCATTGGCTTGCAGTTCAAA-TCAGTAAGTGA
s HiC_scaffold_1 131159721 2664 + 233722169 CTGTCACTTTATTTTATCTGTAAGCCTATCTCTAACAGCACTCTGCCTGGAGGA----GCTCATCTTTCTATCAGGAACCTCTTCTCTCTTCAGTGACATTTGTTGGATCACCTGTGTGTGCTGGTGTCAGCACTTTGCTGGCCTCTTTGAAATCCTGCATTACTGTGGCTCATTTCATTAATCTGTATCATCCTCTGCCCTTTTCAATAAACATCTCCCAAGTATTGGCTGAGGTTTTTATTTCTGGTCTTTAGCATGTCCTATTCTACCTCAA---GCATTTATCCTTCTTGACAGCCTATCAGGTTACAT-TGCTTGTTTGTAGTTCAC--TCATTTCAGCAATTATTTATTGATCACTCCTATGTAATGAACTCTGTTCTATGCCACAAGACTACAAAGATGCATTGGACAAGATTCCAGTTCCTAGAGAATCTCCCAATCTGGTTGGTAGAAGCACCCGTGCTTTCAAAATTATATATGGTAATAGAGGCAAGCACAGGGAAGTATTGGGAGTTAGCAGAA----AGGCC---TACAGCAACTGATACAGCCAGTTCATTTCCTAGAGGAA----GTATCTCTCCTAAATTG--GGAGGTAAGTCTGACTTAACCAGATAATGGGGAAAGCGAGAAAGAGCATTCAGTATTGAACCATGAAGGACATGGATCTCTATCCTCAGAGCCTAGCACAGTGCCTTTCATTTGCTGCATGATAATGGAAGGAATGACTGCATCTAAACATACATTCTTCCttgtgatatttttgtttgtttctttgagtaTAAAGAGGTCATTTATAGTACAAATAAGGTAGCACAAATAA---GGAAAATCC------------ATGTTAGGGATCCTGATGAATGTTTCCATTCCTTAACCTGAAATGTGGTTTAATGTCCACTAATCCTCATGTTCTCAAGCATTTTCAAAGAACGAATCATGGCTAAAAGCAATTAAGTccttcaatctctagtactgacCTTCTAACTAAAGCTTTACCAGAGAGAGCTTCACTCTCCATAGTAAatcattttctggaaaaaaaagacaCTCTGGGGTTAGGTCTTTTGAACTCTACTGACATCTTTCCTTTACTATAAGTTTTATTGCAATATCTTGAGGACATGATCACCAGAAATGATGACACCTTATGCCACCATATAATT--TGGAAC---AATCCAGG--CACAGGTAGAATA-CAGTGTGTTCCTAGC-ATTTAACTACCTC-----------------CACTGCTATGCCCAGAA-----------------------AAATAGGCCTACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGGTAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAG--------Gttg-----------------------------------------acaaaatgaaaacat---------------------------------------------------------cattttgCTGCAAAC--------Caccatatattaaaaaaaa---------------------------------------------------------------------ctaactaTAAACCTGATC---------AATTTAAATTATTCTACATATATTCTTT-------------TCTTGGgtgaaatataattaacac-aaaTCAGCATTAACGTTG--------------------GCT-------GACCATAATAACAAGAGATGATATTAGCTGAATGCTTATTGTATGCCAATCAATAATTAACAAATTCTATATCAATGTATTTAATCCTCATGTCATCTGGATGCATATTTCAAAATCAGGTAAAGTGGGGCTAGAGGTGTAACACTTTCGAGTAGCGTgcatgcctagca-tgtgca------aagtccTGGATTAA--ATCACTAgcaccataa----aataaaat--aaacaaataaaatcagataTATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACATACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTGAAAATATGTGA-------CAGTTAACTTTTTAGTCCttagtgcttttaaaaaatcataaattgttCTCTTGATGATACTT-Taccaaagtttttcttttat-gtgttcaTGTATTTCCCATGCTGATAGCAAAGTTTAAGAGTTGCAATCAAAGTAATTATCTATTTTTCAAGAAAGTATAATGTAG------------------------------------------------ACATTTAGTTAAAATCTA-------------------TAGATATACATGACTGAGTTTGCTGGTGGGGTTAAAGATGCTAT-------TCTCTTGCTTAGACATCTCTCCTGCTGAACTTATACTGGTGAATCACTGCAAGCACCTGGATGAGGAAACCTAGGGATCCATTTACTCTGGGTA-GCACCTTAGCTTGAAGTTTGCCATAGACTTCTTTCCAAAGAGATATC-----------TGTGTTTTGcttactca---------tttttattaaaaaggaaatgtgacTGTAAGCAAAGAGTGAAGTTCTATAAAAAATGAC-GTAGAATAAAGAATGATAGAGGCATTTCAGAAATGAATTATATTACCCAAAATTGGTAATAGGGGGTAGAGATTAGAGCAGATATGTTGGGATGTGGCTATATCTCATTTTTCCATTGGTTTCCAGTTCAAATTCAGAAAGTGA

a score=37300
s chr3           144924071 2783 + 160039680 ccatcacaccATTTT-TTTTTAAACACAAATCTACCAGGACCCTATCTGGGGTACTCTATTCATCTCTCAATGGGCAGTCTCTTCTCTCCTCAGTGACATTTCTTGGGCTACCTGTGTGTAGTGATTTTG--AATGTTCTGTCTTCCATGAAATCCCATGCCACTGTGGCTCACCTTGTCAGTCCCTGCCATTCTTTGCCCTTTCAA--TAGCAACTTTCCCTTCCTTGCTGATGCTTTAATTTCTG--CCTTAGCATG-CCTGTCCCACCACACAGTGCAGTCA-----CTCAGTGCTTTCTCACATAACACCTGCTTGTTTGTAGTTCATATTCACTTTAGCAGCTTCCTATTGGTCACAAATATATTATGTTCTCTGG--------------------------ATCTCAAAAGCTTCTAGTTCTGAGTGAAACTC--AGTCTGGTCTGGAGAGGCACAGGCAGTATCAGTAAAATACACAGAACCAGAGATATGCAAAAGGGAGTTTTGGCA-TTGGCAAAAG-----ATGAGCTCCTATACAGCACCTCTAGAGCCCAGCCCTTCTCTTAGTGAAAATGTGTGTCTCTACTAAATTGTAGAGGACAGGAATTATTTACTTAGGTA--GGTGAAGCTGAGA--------------------CATAGAGAAAA-------------------------AAAACACATTTC-TTAACTG-----------------TTACTATATCTA----------CTTTTTTGGtttatttt-------------------------------------------------------ataagaaagggtcatactatgcaacccaa---------------ctgactttgaact---------tgcctagtctcccaaatgct-------------------------aggattacaagaacata----cttccattgctcaT-----CCTTGATAAACTATAAATTTCTCA--------------------AGTACAtttcttttt------------------tttttttttttttttttt--------------ttttttttttttttaaagatttattttattattatat-gtaagtacactgtagctgtcttcagacacaccagaagagggagtcagatcttgttacggatggttgtgagccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagccccCTCAAGTACATTTCTATACTCAAAATAAAAACAAAAACAAACAAACGTAAAAGAGCCCA-GGAACTTACACTCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGTGGTGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAATTGTAGAAAATTACTATTTCATGTATTAAAAAATGACCTGGAAAACAAAGCAAAAGTATGTCCTGTGTTAGAAATTAAaagtaattatgctgacctagcaaagtggctatagttgatactttgctaTGAATGTATGTAACAATAGCTATCAAAGAAAAAGTGGTTGTTGAGAGTGGGGGTGGGGGCTCAGGAGTGGTCTGAAGGAGGCTATCTGGGAGGGTTGAACTTTAATTGAAAACACAGTTTTTTAAAAAAAATTAAAGGAGCATATGTATAGTATTTAGCAAATATGCATGCTCAAGTAAAATACTGTTAACACTAAAGTAGACTTATCATTGTAATACTTAATAATTATCTAGCTATTAAAAGACAATAGTGTTAATGTACAATAGAGGATGAAAAATTACTGCATGTCAATCAATGTTCAATGAATTCTATATTAACATATTTAATCTTCATGTCAT-----------GCTTAACATC-------------------TGTAATACCT-CAGGTATAACACTTGCCTAGCAATGTGTAGTTTTTAAATTTTATTTtcatcatcaccatcatcatcatcatGGTTATTTTAAAATCAATGATATTAGACAAATCCTTTGATTATAGATTCTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCTGTGGAGCACCTGAAAATATGGAAGTGAATCCAATAGAAAACTTAGTCATT----CTTTTGAA-------AAGTGGTCCTGCTCCCACTGAGCTTTGTGGCACGATATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGGCTCTCCACTGGGATGAAAGCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGCTGGCCTTGGAC---CAACTCTCTGTAGACACTTGGTTGACAAAACC-AGTGGACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTTCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATGTGTGCTGTTCCATGGGAGAG--TCATAGCC---------------GGCAGTGATCAGAACAGATACACTAGACTTTAGCCACAGCTCA---TCCCATTGGCTTGCAGTTCAAATCAGTAAGTGA
s HiC_scaffold_1 131084386 2657 + 233722169 CTGTCACTTTATTTTATCTGTAAGCCTATATCTAACAGCACTCTGCCTGGAGGA----GCTCATCTTCCCATCAGGAACCTCTTCTCTCTTCAGTGACATTTGTTGGATCACCTGTGTGTGCTGGTGTCAGCACTTTGCTGGCCTCTTTGAAATCCTGCATTACTGTGGCTCATTTCATTAATCTGTATCATCCTCTGCCCTTTTCAATTAACATCTCCCAAGCATTGGCTGAGGTTTTTATTTCTGGTCTTTAGCATGTCCTATTCTACCTCAA---GCATTTATCCTTCTTGACAGCCTATCAGGTTGCAT-TGCTTGTTTGTAGTT--TACTCACTTCAGCAATTATTTATTGATCACTCCTATGTAATGAACTCTGTTCTATGCCACAAAACTACAAAGATGCATTGGACAAGGTTCCAATTCCTAGAGAATCTCCCAGTCTGGTTGGTAGAAGCACCCGTGCTTTCAAAATTATATATGGTAATAGAGGCAAGCACAGGGAAGTATTGGGAGTTAGCAGAAAGGCCTACAGTGTCTGATACAGC------------CAGTTCATTTCCTAGAGGAAGTATCTCTCCCTA---AATTG--GGAGGTAAGTCTGACTTAACCAGATAATGGGGAAAGCGAGAAAGAGCATTCAGTATCGAACCATGAAGGACATGGATCTCTATCCTCAGAGCCTAGCACAGTGCCTTTCATTTACTGCATGATAATGGAAGGAATGACTGCATCTAAACATACATTCTTTCTtgtgatatttttgtttgcttctttgagTATAAAGAGGTCATTTACAGTACAAATAAGATAGCACAAATAAGGAAAATCCATGTTAGGAATCCTGATGAATGTTTCTATTCCTTAACCTGAAATGTGGTTTAATGTCCAATAATCCTCATGTTCTCAAGCATTTTCAAAGAGCGAATCATGGCTAAAAGCAATTAAGTtcttcaatctctagtactgacCTTGT--AACTAAAGCTTTACCAGAGAGAGCTTCACTCTCCATAGTAAatcattttctggaaaaaaaaaaagacactcttGGGTTAGGTCTTTTGAACTCTACTGACatctttcttttatataaa------ttttattgcaATATCTTGAGGACATGAT---------------CACCAGAAATGATGGC---ACCTTAT---------------GCCACCATATAATT--TGAAAC---AATCCAGG--CACAGGTAGAATA-CAGTGTGTTCCTAGC-ATTTAACTACTTC-----------------CACTGCTATGCCCAGAA-----------------------AAATAGGCCCACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAG--------Gttg-----------------------------------------acaaaatgaaaacat---------------------------------------------------------cattttgCT------GCACACCaccata--tattaaaaaaaag---------------------------------------------------------------------taactataAACCTgatc---------aatttaaactattctacatatattcttt-------------tcttgggtgaaatataattaacac-aaaTCAGCATTAACGTTG--------------------GCT-------GACCGTAATAACAAGAGATGTTATGAGTTGAGTGCTTATTGTATGCCAATCAATAATTAACAAATTCTATATCACTGTAATTAATCC-CATGTCATCtggatacatattttaaaatcaggtaaaGTGAGGCTAGAGGGTAACACTTTCGAGTAGCGTgcatgcctagca-tgtgca------aagtcTTGGATTAATCACTAGcaccataa-----aatgaaat----aaaccaataaaatcagATATATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACATACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTGAAAATATGTGA-------CAGTTAACTTTTTAGTCCttagtgcttttaaaaaatcataaattgttCTCTTCATGATGATATTT-TACCAGTGTTTCTTCTATGTG---TTCACGTACTTCCCATGCTGATAGCAAAGTTTAAGAGTTGCAATCAAAGCAATTACCTATTTTTCAAGAAAGTATAATGTAG------------------------------------------------ACATTTAGTTAGAATCGA-------------------TAGACATATATGACTGAGTTTGCTGGTGGCGTTAAAGAT----GCTACTTTCTTGCTTAGACATCTCTCCTGCTGAACTTATACTGGTGAATCACTGCAAGCACCTGGATGAGGAAACCTAGGGGTCCGTTTACCCTGGGTG-GCACCTTAGCTTGAAGTTCGCCATAGACTTCTTTGCAAAGAGATATC-----------tgtgttttgcttattta---------tttttattcaaaaggaAATGTGACTGTAAGCAAAGAGTGAACTTCTATAAAAAATGAC-GTAGAATAAAGAATGATAGA-----GTCATTTCAGAAATGAATTTTATTACCCAGAATTGGTAACGGGGTAGAGATTATAGCAAATATGTTGGGTTGTGGCTATATCTCATTTTTCCAATGGTTTCCAGTTCAGA-----AAGTGA

a score=27742
s chr3           144925117 1650 + 160039680 AAAAGAGCCCAGGAACTTACACTCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGTGGTGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAATTGTAGAAAA-------TTACTATTTCATGTATTAAAA-AATGACCTGGAAAAC---AAAGCAAAAGTATGTCCTGTGTTAGAAATTAAaagtaattatgctgacctagcaaagtggctatagttgatactttgctaTGAATGTATGTAACAATAGCTATCAAAGAAAAAGTGGTTGTTGAGAGTGGGGGTGGGGGCTCAGGAGTGGTCTGAAGGAGGCTATCTGGGAGGGTTGAACTTTAATTGAAAACACAGTTTTTTAAAAAAAATTAAAGGAGCATATGTATAGTATTTAGCAAATATGCATGCTCAAGTAAAATACTGTTAACACTAAAGTAGACTTATCATTGTAATACTTAATAATTATCTAGCTATTAAAAGACAATAGTGTTAATGTACAATAGAGGATGAAAAATTACTGCATGTCAATCAATGTTCAATGAATTCTATATTAACATATTTAATCTTCATGTCATGC----------TTAACATC--------------------TGTAATACCTCAGGTATAACACTTGCCTAGCAATGTGTAGTTTTTAAATTTTATTTtcatcatcaccatcatcatcatcatGGTTATTT-TAAAATCAATGATATTAGACAAATCCTTTGATTATAGATTCTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCTGTGGAGCACCTGAAAATA--TGGAAGTGAATCCAATAGAAAACTTAGTCATTCTT-TTGAA---------AAGTGGTCCTGCTCCCACTGAGCTTTGTGGCACGATATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGGCTCTCCACTGGGATGAAAGCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGCTGGCCTTG----GACCAACTCTCTGTAGACACTTGGTTGACAAAACCAGTGGACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTTCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG---------TGTGCTGTTCCATGGGA
s HiC_scaffold_1 131199244 1363 + 233722169 AAATGGGCCCA---ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaat---agaaaagtaatttttattatacCATACATTAAAATACTTACTTGTAAACCTCAAAAGCTAAACTATGTCCTGC----------------AAATATGCT----------------------------------------------------------------------------------------------------------------------------------------TTAATTGAA-----------TGAAATGTAATTAATGGGA-----------------------------------------------------------------ATCAGTGTTATACTAAATGA----------AACATAGCAAAATGGTAATAGTAGGCAACATTAGTCAAGTGCTTACAATATTTCATACAGTGACTGAAGaattttatat-aatacatttaatCTTCCTGTGATCCagatacaaattttaaatcaGATATGTTGGGGAAGAGGGTGTAACACTATGAACACAATACATGCCTAGCA-TATGCA------AGACTGTGGGTTCA--GTCACCAGCaccacaataaaagaaaataatcaattaaataaaatcagatatGGCCTTTGATTATAAATCTCAGGAGCCAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTCTAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCTGAAAATACGTGACAGTTATTCTTTGAGGCAACTTAGTCATTATTACTTAATAAAATCTTAAGTGTTTCTATTCTTGATGATGTTTATAGCAAGGAGTTTCATTTGTGTGTTCCACTTGTTCCCTATGCACgtaatgaattttaagagttccAGTAAAAGCAATTTTTTA--TAGTAAAAGGCTGTGAT--------------------------------------------------TTAGAAACATTTAAAT-------------------------GGCATATATGACAGAGTTCTCAGAAGTAATGGAACCT----GCCAGGCCCTTGTTTACATCTGTCTCCTGCTGGCCTTATGTTGGTGAATGCTCTGTAGGCAGCTTGATGTGGGAACTTGGGAAAACATT-TTCTCTAGGTACTACATTATCTTGTTTTCTGTATG---CTTCTCCAAATGTGATAAGGTGGAG---------TTTTGATTATTCAAGGGCTTTC---TTATCTAAAAGA-AATGTGGCTGGAAGCAGATTGTGAGATGCTGTCATAAGGGACAGTAGAATAAAGAGTGGTGGAGGCATTATAAATGTGC--TTCCATGAAA

a score=28825
s chr3           144925117 1650 + 160039680 AAAAGAGCCCAGGAACTTACACTCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGTGGTGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAATTGTAGAAAA-------TTACTATTTCATGTATTAAAA-AATGACCTGGAAAACAAAGCA---AAAGTATGTCCTGTGTTAGAAATTAAaagtaattatgctgacctagcaaagtggctatagttgatactttgctaTGAATGTATGTAACAATAGCTATCAAAGAAAAAGTGGTTGTTGAGAGTGGGGGTGGGGGCTCAGGAGTGGTCTGAAGGAGGCTATCTGGGAGGGTTGAACTTTAATTGAAAACACAGTTTTTTAAAAAAAATTAAAGGAGCATATGTATAGTATTTAGCAAATATGCATGCTCAAGTAAAATACTGTTAACACTAAAGTAGACTTATCA---TTGTAATACTTAATAATTATCTAGCTATTAAAAGACAATAGTGTTAATGTACAATAGAGGATGAAAAATTACTGCATGTCAATCAATGTTCAATGAATTCTATATTAACATATTTAATCTTCATGTCATGC-----------TTAACATC--------------------TGTAATACCTCAGGTATAACACTTGCCTAGCAATGTGTAGTTTTTAAATTTTATTTtcatcatcaccatcatcatcatcatGGTTATTTTAAAATCAATGATATTAGACAAATCCTTTGATTATAGATTCTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCTGTGGAGCACCTGAAAATA--TGGAAGTGAATCCAATAGAAAACTTAGTCATTCTTTTGAA------AAGTGGTCCTGCTCCCACTGAGCTTTGTGGCACGATATTTGTTGTGTAGCTGCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGACTCCAGTCACACACAGTGGGGCTCTCCACTGGGATGAAAGCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGCTGGCCTTG----GACCAACTCTCTGTAGACACTTGGTTGACAAAACCAGTGGACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACATCCTTGAAGAGTGGCATCACATAACTACATGTTCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG---------TGTGCTGTTCCATGGGA
s HiC_scaffold_1 131249593 1362 + 233722169 AAATGGGCCCA---ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGttagaaa----tagaaaagtaaattttagtATACCATACACTAAAATACTTAATTGTAAACCAGAAAACTTAAACTATGTCCTGC----------------AAATATGCT----------------------------------------------------------------------------------------------------------------------------------------TTAATtgaa-----------tgaaatataattaatGGG---------------------------------------AATCAGTGTTA-TACTAAAGGAAACATAGCAAAATGGTAATAGT----------------------AGGCAACATTAGTCAAGTGC----------------CTACAATGTCTCAGACAGTGACTGaagaattttatattaatagaTTTAATGTTCCTGTGATCCAGATACAAATTTTCAAATCAGTCACGTTGGAGAAGAGGGTGTAACACTATGAGCACAATATATAACTAGCA-TGTGCA------AGACTGTGGTTTCA--GTCACCAGCAccacaataaaagaaaatc--aattcaaTAAAATCAGATGTGGCCTTTGATTATAAATTGCAGGAGCAAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTCTAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCTGAAAATACGTGGCAGTTATTCTTTGAGGCAacttagtaatatttttaaaaatcttaagtgGTTCTATTCTTGATGATGTTTATAGCAAGAAGTTTCATTTGTGtgttccatttgtttcctatacACATAACGAATTTTAAGAGTTCCAGTAAAAGCAATTTTTTATAGTACAAGAGCTTGATTTAGAAACATTTAAA-----------------------------------------------TGG------------------------------CATACATGACAGAGTTCTCAGAAGTAATGGAACCT----GCCAGGCCCTTGTTTACATCTGTCTCCTGCTGGCCTTATGTTGGTGAATGCACTGCAGGCAGCTTGATGTGGGAACTTGTGAAAACATT-TTCTCTAGGTACCACATTATCTTGTTCTCTGTAGG---CTTCTCCAAATGTGATGAAGTGGAGCTACAAGTGTTTTGGTTATTCAAGGACTTTC---TTATCTAA-----AATGTGGCTAGAAGCAGATTGTGAGATGCTGTCACAAGGGACAGTAGAATAAAGAATGGTGGAGGCATTATAAATGTGC--TTCCATGAAA

a score=10015
s chr3           144925121 245 + 160039680 GAGCCCAG-GAACTTACACTCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGTGGTGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGT
s HiC_scaffold_1 131301477 246 + 233722169 GGGCTCAGTGAACATACCGCCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGGTTTGTTGTCATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAATTGT

a score=19958
s chr3           144925131 1099 + 160039680 ACTTACACTCATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGCCGGTGGTGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCTAAAAGTGTAGTAAATTGTAGAAAATTACTATT-TCATGTATTAAAAAATGACCTGGAAAACAAAGCAAAAGTATGTCCTGTGTTAGAAATTAAaagtaattatgctgacctagcaaagtggctatagttgatactttgctaTGAATGTATGTAACAATAGCTATCAAAGAAAAAGTGGTTGTTGAGAGTGGGGGTGGGGGCTCAGGAGTGGTCTGAAGGAGGCTATCTGGGAGGGTTGAACTTTAATTGAAAACACAGTTTTTTAAAAAAAATTAAAGGAGCATATGTATAGTATTTAGCAAATATGCATGCTCAAGTAAAATACTGTTAACACTAAAGTAGACTTATCATTGTAATACTTAATAATTATCTAGCTATTAAAAGACAATAGTGTTAATGTACAATAGAGGATGAAAAATTACTGCATGTCAATCAATGTTCAATGAATTCTATATTAACATATTTAATCTTCATGTCATGCTTAACATCTGTAATACCTCAGGTATAACACTTGCCTAGCAATGTGTAGTTTTTAAATTTTATTTtcatcatcaccatcatcatcatcatGGTTATTTTAAAATCAATGATATTAGACAAATCCTTTGATTATAGATTCTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCTGTGGAGCACCTGAAAATA--TGGAAGTGAATCCAATAGAAAACTTAGTCATTCTTTTGAAAA
s HiC_scaffold_1 131034836  782 + 233722169 ACTTACCTTCATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGGTGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGA-------------TAGAAGGTTAATatgataaaagattttaaaattatct-------------------tgtcC---------ATTTAAAAATCTATCTGTAAACCTGAAAGAATAGC---AATTTATTCTGTAATTTTATTGT------------TTATCGAATAGAATATGATTATT------------------------------------------------------------CAATTAATAGTAGAGT------------------------------------------AAGGTACATTTTCAAT---AATtctgataataataa-------------tagctatacTGACTGGTTA-----CTATTGGCTCCCA-----GTTAATacat---------taaaaaact---------------------------ttttttattaatag---------------------taacatttttaat--CTCAGGT-------------------------TTCCTAAGT--------------------------------AGATATGTTAAAAACA--------------------TGATTACAAATTCTGAAAACAAAGATTGGCATACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTCTAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCTGAAAATATGTGACAGTTAATCATTGAGGCAACttaatcattaatttaaaaa

a score=5982
s chr3           144925140 252 + 160039680 CATACTCCCTGACACATCAAGAACTAGGCACACAATTCTCTCACTGATCCTCAGCAG-GGAGAAGAAGGGTGGAGCCGGTGGT---GTCTC---CATGGGCGTGCTGCTGTTAAAATCCTCAGAACTGCTGATTACTTCCCAAGTGCTTCTCCATTGGCACTTTTCATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCTTTTTTACAGAACTCAGTCACCT-----AAAAGTGTAGTAAATTGTAGAAAATTACTATTTC
s HiC_scaffold_1 131343062 263 + 233722169 CATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCC-ATCCTGGACAACAGAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGGGATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAAAAAGAGCAGAGTTCATCAGAGAATAACAGCATTTC

a score=5852
s chr3           144925970 216 + 160039680 AGATTCTGGACACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGGACTCTATTCATACCCGTGATACCTGTGGAGCACCTGAAAA
s HiC_scaffold_1 131304175 216 + 233722169 AGAgcctgggagaaaaaaataaggtaCTTACAGACTCAATACTTTGTGCAAACATTATGGAAGCCTTTGCAATCTGTTGCTTCTGTGGTATCAGCACACATTCTTTATTATACAGTCCTGTTAATTTGTTGAGTCTGCATGGTCCAACTGTACAACTGCCTCCCTGGCACTTAATTGTTTTATATTGTCCGGTAATATCTGTTGAACATCTGAAAA

a score=7194
s chr3           144925973 209 + 160039680 TTCTGGACACAGTGACTGGTA--TACTTACAGAATCGATACTTTGCATGAACATTATGGATGCCTTTTCTGATTGAACTTTATCTGGGAAGAACTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTGGTTATACAGCTGCCCCCTTGGCATGTATGG---ACTCTATTCATACCCGTGATACCTGTGGAGCACCTG
s HiC_scaffold_1 130991877 213 + 233722169 TTGTGAGCATAG-AACTGGAAGGCACTTACTGAATCGAGGCTTTGCATGAACATTATCGAGTCTCTTGCGGTCTGGGATTTGTCTGGGATAAATGTGCATTTTGCTTCGTAAAGTCCTGTCTTGGAGTCACGTCTACACGGCCTTGTTATACAGCTGCCTCCCTTGCATTCATTGAAAACCACATTCATACCAGTAATGTGAGTGGAGCATCTG

a score=10627
s chr3           144926856 442 + 160039680 TCTTAATGAGTTCTGGCAGGTCTGGGAGAGATGTGTAAATAAAAAGTG--TCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTACACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGAATAAAATAGGCTTGTGATATTGCATCTGTTATCTGCCTTGGAAGAAAATATGGATGCTTGTCATTGGAAAGGACTATAGAGCAGTTAAA-----------AGCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGAT---GAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGT---AAGACATTTTTGAAATACATAGTCATAATTTGATTGGTAAATTTTATATCTCAAAAATTTC
s HiC_scaffold_1 131037135 415 + 233722169 TCTAAATGACTTTTGGCAGCC----AAAAAACCAgaacatgaaaaatacatttaattgtcTGCCAAATGCTC----TTGAAGTTATGTGTATCTT-----AAGGAGacaatgtattt--------tttcttaaaa-------aatatttttttgtgacATGGAGTCTGTTATCTccactggaataaaa-ataaattatcatcatttgaaaggagtcagaggaagaaaaataagaccTGTTacacagtgatcttttaaaaaaatttag--------tcatGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAG---GGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGAGA------AGACTTaattcaaaggacaaaatttatcTGTTAAATATTTC

a score=14627
s chr3           144926860 476 + 160039680 AATGAGTTCTGGCAGGTCTGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTACACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGAATAAAATAGGCTTGTGATATTGCATCTGTTATCTGCCTTGGAAGAAAATATGGATGCTTGTCAT--------------TGGAAAGGACTATAGAGCAGTTAAAAGCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGT---AAGACATTTTTGAAATACATAGTCATAATTTGATTGGTAAATTTTATATCTCAAAAATTTCCAggccaccgtgatggttcagtgggcaaaagtgcttgc
s HiC_scaffold_1 131251600 468 + 233722169 AGTGATTTCTGTCAGCTATGTGTCATATGTG------AAATATGTCAAATTGTCAA-CAAATGCTTCCCACTGcagttatgtatattttaaatggaaaactaGCTGCATTAagataaaatttctagaaaaatgagAGCAAT---TTTGTGATATTGCATCTATCCTCTGCTTTGGG-GCACAGAGAAATGATTATCATCTATAATAAATCagtgtaaagagaataaaatcaattaaaagtcTGAGGTTATATAAGAAAATTTAAGCA----GTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttc--aaacatgTAA-CAAAATTCAAGTGACAAGTTTCTTATCTGAAAAATTTGAAG------ATGATCTTTCAGT-TACAAAAGGATTTGC

a score=14944
s chr3           144926860 476 + 160039680 AATGAGTTCTGGCAGGTCTGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTACACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGAATAAAATAGGCTTGTGATATTGCATCTGTTATCTGCCTTGGAAGAAAATATGGATGCTTGTCATT----GGAAAGGACTATAGAGCAGTTAAAA--------GCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGT---AAGACATTTTTGAAATACATAGTCATAATTTGATTGGTAAATTTTATATCTCAAAAATTTCCAggccaccgtgatggttcagtgggcaaaagtgcttgc
s HiC_scaffold_1 131201258 468 + 233722169 AGTGAGTTCTAGCAGCTATGGTAGGCAGGTGTTAA----ATGTGTCAAATTGTCAA-CAAATGCTTCCCACTGCAGTTATGTATATTTG-AAATGGAAAACTAGCTGCATTAAGATAAACTTTCTAGAAAAATGA--GAGCAATTTTGTGATATTGCATCTATCCTCTGCTTTGGGGCACAGCG-AAATGATTGTCATTTATAGCAAATCagtgtaaagagaataaaatcaactAAGTCTGAGGTTATCTAAGGAAATTTAAGCA----GTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaacatttc--aaacatgTAA-CAAAATTCAAGTGACAAGTTTCTTATCTGAAAAATTTGAAG------ATGATCTTTCAGT-TACAAAAGGATTTGC

a score=10112
s chr3           144926894 407 + 160039680 ATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTACACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGAATAAAATAGGCTT--GTGATATTGCATCTGTTATCTGCCTTGGAAGAAAATATGGATGCTTGTCATTGGAAAGGAC-TATAGAGCAGTTAAAAGCCAGAGGTCAT-TTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGT---AAGACATTTTTGAAATACATAGTCATAATTTGATTGGTAAATTTTATATCTCAAAAATTTCCAg
s HiC_scaffold_1 131087953 374 + 233722169 ACAGGATGTGTCAAATTGCCAAAAAAAT--TTGCCATTGATATtatgtgcattta-aaataaacagcCATGCACTTTaagacaatt----ttgaaaaaaagtaaaaccagtTTTTGTGATATTGCATCTACCATCTGCTTTGGGG------ATAAGTGATTATCATTCATAATAACAGGTTAATAAAATGAAAGCCTGATGTTATGTTAAGAAAATGTAAGTA----GCCTTGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaaacatttc--aaaca-----------------tgataaa----atttctcaaaaatcttaAG

a score=11013
s chr3           144926894 409 + 160039680 ATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTACACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGAATAAAATAGGCTT--GTGATATTGCATCTGTTATCTGCCTTGGAAGAAAATATGGATGCTTGTCATTGGAAAGGACTATAGAGCAGT----TAAAAGCCAGAGGTCAT-TTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGT---AAGACATTTTTGAAATACATAGTCATAATTTGATTGGTAAATTTTATATCTCAAAAATTTCCAggc
s HiC_scaffold_1 131163192 392 + 233722169 ATAGGATGTGTCAAATTGCCAGA-AAACATTTGCCAGTGAAGTtatgtgcatttt-aaataaacaaccatgtactttaagaaaaaattcctaaaa---aagTAAAACCAGTTTTTGTGATATTGCATCTACCATCTGCTTTGGGACTGG---TAAGTGATTATCATTCATAATAAC---AGGTTAATGAAATGAAAGCCTGATGTTACGTTAAGAAAATGTAAGTA----GCCTTGCCTTGTGGCTTCAAGTTTATTTAACTCGCTCCTGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaacatttc--aaacatgTGATAAAAATTC----------TCAAAGATCTTAAGATGTTTCAGGC

a score=5123
s chr3           144927036 241 + 160039680 AGAAAATATGGATGCTTGTCATTGGAAAGGACTATAGAGCAGTTAAAAGCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGA---TTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGTAAG-ACATTTTTGAAATACATAGTCATAATTTGATTGGTAA
s HiC_scaffold_1 131308704 231 + 233722169 AGAAAATA-GgctgatttttaaagtaattaattcTAGA--AGAAAGGAGCTA-----CAATTTAGAATAGTTTGAGAAGATGAAATACCTTACGGCTTGAGGTCTTCCCCTGGATAA------GTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACATTTCGGTTACCTGAGTAAAATAAGAATGGTAA

a score=6121
s chr3           144927120 138 + 160039680 ATGCCTTGTTGCTTCGAT---TTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGTAAGACATTTTTGAAATACATA
s HiC_scaffold_1 130994007 138 + 233722169 ATACCTTGTTGCTTCAATAGTGttctttctggaaaaa---taaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGAGAACATTGTCATTTATA

a score=5855
s chr3           144927123 114 + 160039680 CCTTGTTGCTTCGATTTTCTTTGATGAAGCACTGTAGAATGGCTGGTCTTCGTTGTACTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACAGTTTTCCTGT
s HiC_scaffold_1 131346675 114 + 233722169 ccttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGT

a score=23972
s chr3           144927967 1040 + 160039680 gctATTATAGATTATGTTGGTTACATTGGCTAGTGCATCAAGAATTTGTTGAATTTTGAGAA-----AATTTAAAT--GACTTCAAATAAGTACTTTaa---attaagccaattgtttaatgtc-acaaagctaata----gaggaatcaagatttggagccaagggtttctgctcc---agtcTGCTTATTTAATAGAGTATAGAGTTACATG-TCGCAATCATGCAATGCTTTAGCCAAATTCCCCACCTGAATCTCCATATTCAACTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAACGACAG----TAGTTAAAATAACTCTGAATCAATAAATGTGTAGGAGAACTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaTTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCT-TCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTG-AAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATGAACA--TGAGAATGGAGTCATGTCTTAGGTGCACTTCTCTGGTGAACCCTGTTAAGCTGTTATTACAAAAGGAGCCATGCATCAAGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCC--CCTCATCA-GCACCTGCAAAGGCTTCTGGGTATCCAT-CATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTGATGTAGTTATATACCTCGTGTTTAGAGTAATTTATTCGCATCTAATATTTGTGTGAAGACTTTTTGGTTGGC
s HiC_scaffold_1 131121423  987 + 233722169 GCTATCATAGTATAT-TTACATAGATTATCTAGTgca---aaaaattgcaaaatgtAGAAACTCCTCAATTCACATTTGATTGGGAATGAG--CTTTGATATAGAAGATCACTTCTTTAGTTCCCACAAAACTGGTATGTAGAAGAGATAGGATT-ATAACCTGAGGTCTCTGTATCCAAAGTCTTCTCACTTAATCTGGGTCAGATCTGCTTGATAAAAATTAGATA----TTTGACAAAATTTCCTACCTAATGGTccatattcattttcttttttgcccaGTACAAAGTCAGGGGTGAAatgaatatattctgctttttctcCACCTTCTGTGAACTGCCTTGTATAAGGTTCATCTCTGTCAGGGAGGCTCGGTGGTGCAACTATCACATCAGCCTGAGAGTGTTGGAAAAGGTTGTTAAGCATTG-GGaacatgaatgaaaatatttagttAAAATATATCTGAAACAA-AAATTTGCAAAGG----TGGGAGCAtcagaaaat--ttccttttttgct-----------------------------------aGAGAAGATTTTGGCACTTACATGTTTGTAGCTCTCATGTTCTGGCCTCCCTGTATTCAGGATTTGCTGCGCAAGTCTCAGGAATCAATATAGacacagttttgaaaaaaaaatcttttttctgtgGCTTCCAAGAGATAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAG-TATGTGAAAACAACCAAGTGAGAGTGGAATAAGAGAGGAGTGGTTCTTTTCGggaattttctgtttcatttttaattcaaaagcAACTG---ATAATGT----------GCAG--TTTGCCCACTGTTCTAGC----------TCAGTCCTGAGCTACTACTTCATCCTGCATCATGAATTGCTTATCAATCTTCTTGCCCCTTACTTCTAAAAGCAAC----AGTCTATGCCTGGTTTTTGGAGAAGCTGATTAATACAAACACATATATGAACTGTGAAGTCATTTCCTTGTTTCCCAGGGTGCTGTTAGCACTTTCCGGGTAAC

a score=24973
s chr3           144927968 1039 + 160039680 ctATTATAGATTATGTTGGTTACATTGGCTAG-TGCATCAAGAATTTGTTGAATTTTGAGAA-----AATTTAAAT--GACTTCAAATAAGTACTTTaa---attaagccaattgtttaatgtc-acaaagctaata----gaggaatcaagatttggagccaagggtttctgctcc---agtcTGCTTATTTAATAGAGTATAGAGTTACATG-TCGCAATCATGCAATGCTTTAGCCAAATTCCCCACCTGAATCTCCATATTCAACTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAACGACA----GTAGTTAAAATAACTCTGAATCAATAAATGTGTAGGAGAACTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaTTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATGAACA--TGAGAATGGAGTCATGTCTTAGGTGCACTTCTCTGGTGAACCCTGTTAAGCTGTTATTACAAAAGGAGCCATGCATCAAGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCC--CCTCATCA-GCACCTGCAAAGGCTTCTGGGTATCCATCATCTCACCTCACAAGACAGCTTGAGGCA------TGTACTTGGTGATTACAATAATTGATTGATGTAGTTATATACCTCGTGTTTAGAGTAATTTATTCGCATCTAATATTTGTGTGAAGACTTTTTGGTTGGC
s HiC_scaffold_1 131255252  984 + 233722169 ctatcaTAGTATAT-----TTACATAGATTATCTACTTCAAAAAATTGCAAAATGTAAAAACTCCTCAATTCATATTTGATTGGGAATGAG--CTTTGATATAGAAGATCACTTCTTTAGTCCCCACAAAACTGGTATGTAGAAGAGCTAGGATT-ATAACTTGGGGTCTCTGTATCCAAAGTCGTCTCACTTAATCTGGGTCAGACCTGCTTGATAAAAATTAGACA----TTTGACAAAATTTCTTACCTGATGGTccatattcattttcttttttgcccaGTACAAAATCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGTCTTGTATAAGGTTCATCTCTGTTGGGGAGGGTCGGTGGTGCCACTATCACATCAGCCTGAGGGTGTTGGAAAAGGTTGTTAA-ACATTGAGCgcagaaatgaaaatgtatagTCAGAATGAATCTGAAACAA-----ACCTTGAAAAACTTGGGAGCATCAGAAAAT--TTCCCTTTTTGCT-----------------------------------AGAGAAGATTTTGGCACTTACGTGTTTGTAGCTCTCATGTTTTGGCCTCTTGTATTCAGGATTTGCATCCCAAGTCTCAGGAATCAATATAGatacagttttgaaaaaaaatcttttttctgtgGCTTCAAAGAGGTAAGTAGATGCTGTGGACACCATGTCCTGTTATCAAAGGGAAAAAG-TATGTGAAAACAACCAAGTGAGAGTGGAATAAGAGAGGAGTGGTTCTTTTCGggaattttctgtttcatttttaattcaaaagcAACTG---ATAATG----------AGCAG--TTTGTCCACTGTTCAAGC----------TCAGTCCTGAGCTACTACTTCATCCTGCATTCTGAATGGCT------TATCAATCTTATTACCCCTT---ACTTCTAAAAGCAACAGACTATGCCTGGTTTTTGGAGAAGCTGATTAATACAAACACATATATGAACTGTGGAGTCATTTCCTTGCTTCCCAGGGTGCTGTTAGCACTTTCCGGGTAAC

a score=26875
s chr3           144927969 1073 + 160039680 tATTATAGATTATGTTGGTTACATTGGCTAGTGCATCAAGAATTTGTTGAATTTTGAGAAA-------ATTTAAATG--ACTTCAAATAAGTACTT-Taaattaagccaattgtttaatgtc-acaaagctaata----gaggaatcaagatttggagccaagggtttctgctcc---agtcTGCTTATTTAATAGAGTATAGAGTTACATG-TCGCAATCATGCAATGCTTTAGCCAAATTCCCCACCTGAATCTCCATATTCAACTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAACGACAGTAG----TTAAAATAACTCTGAATCAATAAATGTGTAGGAGAACTAGCAAGCACCAG-AAAATACTTTTTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaTTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAG-ATAGGTAAAAATGAACATGAGAATGGAGTCATGTCTTAGGTG-CACTTCTCTGGTGAAC------CCTGTTAAGCTGTTATTACAAAAGGAGCCATGCATCAAGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCTGC------AAAGGCTTCTGGGTATCCA-TCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTGATGTAGTTATATACCTCGTGTTTAGAGTAATTTATTCGCATCTAATATTTGTGTGAAGACTTTTTGGTTGGCTTATGGAATG-TCTGAAGCCTGGTGACCATATCTTT
s HiC_scaffold_1 131204908 1022 + 233722169 tATCACAGGATAT-TTATATAGATTATCTAGT---TCAAAAAACTGCAAAATGT--AGGAACTCTTCCATTTACATTTTACTGGAAATGAGTTTTGATATAGAAGATCACTTCTTTAGTTCCCACAAAACTGATATGCAGAAGAGATATGATT-ATAACCTGGGGTCTCTGTATCCAAAGTCTTCTCACTTAATCTGAGTCAGACCTGCTTGATAAAAATTAGACA----TTTGACAAAATTTCCTACCTGATGGTccatattcattttctttttttcccagtacaAAGTCAGGGGTGAAATGAATGTATTCTGCTTTTTTCCCACATTCTGTGAACTGTCTTGTATAAGGTTCATCTCTGTTGGGGAGGGTCGGTGGTGCCACTATCACATCAGCCTGAAGGTGTTGGAAAAGGTTGTTAA-ACATCGAGaacatgaatgaaaatatttacttaaagtGAATCTGAAACAATAAATCTGTGGCAAAACTTGAGAGTATCAGAAAAATTGTTTTTTCGCT--------------------------------------AGAGAAGATTTTGGCACTTACGTGTTTGTAGGTCTCATGTTTTGGCCTCCTGTATTCAGAATATGCTTTCCAAGTCTCAGGAATCAATATGGacacagttttgaaaaaaaatcttttttctgtgGCATCAAAGAGGTAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAGCATTGGGGATAGCCAA-GTGATATTGGAGTTAGG---AAGGTGTCACTCATCTCAGGGATTTCCCACCTTTTAATTGTTAATTAAAGAGCAAATGACTTATGAA----------CAGCA-TCTCTGCCCA--CCTTAAGCCTGAA--CTATCAGTTCAT-----------------CCTGCTGAATGAAAAACTCTTTAATCTTTAGTCCTTTTACATCAAAAGGCAACTT----CTTCTGGATGGTGTTTATAAGAATTGATGAATATAAATACGCATGTGATCTTTGTAATCATTTACTTGACTCCAATACCTGTGT-AGCAAGTGTTACTTGATTTTTGTAGCACTCTGAAATTCAGTTTCCTTACCTCT

a score=26117
s chr3           144928061 651 + 160039680 taagccaattgtttaatgtcacaaagct-----aatagaggaatcaagatttggagccaagggtttctgctccagtcTGCTTATT--TAATAGAGTATAGAGTTACATGTCGCAATCATGCAATGCTTTAGCCAAATTCCCCACCTGAATCTCCATATTCAACTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAAC-GACAG----TAGTTAAAATAACTCTGAATCAATAAATGTGTAGGAGAACTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaTTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATGAACA--TGAGAATGGA
s HiC_scaffold_1 131040832 619 + 233722169 TAGCCTACTTGTTTAAGATCACACAGCCTGATAAGCAGAAGATTCAGGATTTAAACCTATGTACTTTGGCTGAAATGCATTTACTCTTAACTGGGAAGAGAGCTATTTGCTGCGAG-ATGAAATGTTTTAATCAAATTTCCTACCTGATGGTCcgtattcattttgtttctttcccagTACAAAGCCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGCCTGGTATAAGGTTCATCTTGGCCTGGGAGGGTTGGTGGTGCAATTATAATATCAGCCTGAGAGTGTTGGAAAAGATTGTGAAAACATCAGCATTGGACATGGACAGCATTTAGTCTGGAAAACTCTGAAATGATGAGCTAAGGTTGGCATTAGCAGATG-tagaaagcatttt-------------------------------------------aaagaaaagtcatTGACACTTACATGTTGGTAGCTCTCATATTTTGGCCTCCTGtattgtgtgttttctttccaattcttaggaattaatatagacacatttttgaaaaaaaatctcttttctgtGGCTTCAAACAGGTAAGTAGATGCTGTTGTCACCATGTCCTATTATCAAAGGGAAACAG-TATGTGAAAACAATCAAGTGAGAATGGA

a score=26041
s chr3           144928073 932 + 160039680 ttaatgt--cacaaagctaatagaggaa---tcaagatttggagccaagggtttctg-ctccag--tcTGCTTATTTAATA-GAGTATAGAGTTACATGTCGCAATCATGCAATGCTTTAGCCAAATTCCCCACCTGAATCTCCATATTCAACTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAACGACAG----TAGTTAAAATAACTCTGAATCAATAAATGTGTAGGAGAACTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaTTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATG--AACATGAGAATGGAGTCATGTCTTAGGTGCACTTCTCTG-GTGAACCCTGTTAAGCTGTTATTA---CAAAAGGAGCCATGCATCAAGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCTGCAAAGGCTTCTGGGTATCCA-TCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTGATGTAGTTATA------TACCTCGTGTTTAGAGTAATTTATTCGCATCTAATATTTGTGTGAAGACTTTTTGGTTG
s HiC_scaffold_1 131166079 875 + 233722169 TCAATGTTGCACATAACTAATATACAGAAGGGCAAGAATTTGAGCCTAGGGTCTCTGGCTCCAGAGCCCGCTTATTTAATCTGGAAACACATTTGCTTGTTGAAA--ATTAGATATTTGGTGCAAATTTCCTACCTAATGGTCCATATTCATCTTGTTTTTTGCCCAGAACAACATCAGGAGTCAAATGAATGTATTCCGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAAAAGAGCACGAACCCATCAAGAGGAGAAATGGTGATGTTTAGTGAGACTAACTCTGCAACAATCTATG----GTCTAAGTATGAAGCTTCAGAATATATTCCTTT--CCATTG-----------------------------------GAAACAAATTTGACACTTACATGTTCGTAGCTCTCATATTTTGGCCTTGTGTATTCAGAATTTTTCTGCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATTATCAAAGGGAAACAG-TATGTGAGGATGGAAGAGTAAGCGTGGAGTCAT-------GAACACTGCTTTATGTCAGGCATTTCTCACTGTTAGTAACGCAAAAGCAACTGAGCTAGGAGTT-----------GGGTCTTGCACATAATT-----TCGGCTCCTTCCACTC------------CATCTGCAGCATGAAAACCTCTTCAGTCTTTAGTCTTCCTACCACAACAGGTGACT----GTTTCTGCACAGTGATTAGAAGAGTTGGTGGATAtgattataaatatgtaaatgaacTTTAGAGTCATTTACTTGGCTCTAGTAGTGGTATTAGCACTTTCTGGGTG

a score=25337
s chr3           144928073 953 + 160039680 ttaatgt--cacaaagctaatagaggaa---tcaagatttggagccaagggtttctg-ctccag--tcTGCTTATTTAATA-GAGTATAGAGTTACATGTCGCAATCATGCAATGCTTTAGCCAAATTCCCCACCTGAATCTCCATATTCAACTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAACGACAGTAGTT----AAAATAACTCTGAATCAATAAATGTGTAGGAGAACTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaagaaaaaaaaagaaaaaaaTTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAAT---GAACATGAGAATGGAGTCA-------TGTCTTAGGT---GCACTTCTCTGGTGAACCCTGTTAAGCTGTTATTACAAAAGGAGCCATGCATCAAGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCTGCAAAGGCTTCTGGGTATCCA-TCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTGATGTAGT------TATATACCTCGTGTTTAGAGTAATTTATTCGCATCTAATATTTGTGTGAAG-ACTTTTTG---GTTG--GCTTATGGAATGTCTGAAGCC
s HiC_scaffold_1 131090841 905 + 233722169 TCAATGTTGCACATAACTAATATACAGAAGGGCAAGAATTTGAGCCTAGGGTCTCTGGCTCCAGAGCCCGCTTATTTAATCTGGAAACACATTTGCTTGTTGAAA--ATTAGATATTTGGTGCAAATTTCCTACCTAATGGTCCATATTCAGCTTGTTTTTTTCCCAGAACAACATCAGGAGTCAAATGAATGTATTCTGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAGAAGAGCAGGAACCCATCAAGAGGAGAAATGGTGATGTTTACTGAGACTAACTCTGCAACAATCTATG----GTCTAAGTATGAAGATTCAGAATATATTCCTTT--CTGTTG-----------------------------------GAGACGAATTTGAGACTTACATGTTTGTAGCTCTCGTATTTTGGCCTTGTGTATGCAGGATCTTCATTCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATAATCAAAGGGAAACAG-TATGTGAGGATTGGAAGAGTAAGAGTGGACTCATGAGCACTGCTTTATGTCAGGTATTTCT--------CACTGTTA----GTTAACACAAAAGCAACTGAGCTAGGAGTT-----------GGGTCTTGCACATAATT-----TCGGCTCCTACCACTCCAT-----------CCTGCAGCATAAAAATCTCTTCAGTCTTTAGTCCTCCTACCACAACAGGTGACT----GTTTCTGCACAGTGATTAGAAGAGTTGGTGGATATGATTATGAATATGTAAATGGACTTTAGAGTCATTCACTTGGCTCTGGTAGTGGTATTAAGCACTTTCTGTATGTTGTAGCTTTTGACATAACTGAagcc

a score=6977
s chr3           144928236 431 + 160039680 AAGTCAGGGGTGAAGTGAATGTATTCTGCTTTCTCTTCACACTGTGTGAACTGCCTGGTGTAGGGCTCATCTCTGCCCTCGAAGGCGGGAGGTGCCACTTTAATGTCAGCCTGAGAAAGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAACGACAGTAGTTAAAATAACTCTGAATCAAT---AAATGTGTAGGAGAACTAGCAAGCACCA--GAAAATACTTT--------TTTTGTTGTTGTTCGACaaaaaaaaaaaaaaaaaaa--------------gaaaaaaaaagaaaaaaaTTTGATA---------CTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTTTTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCT
s HiC_scaffold_1 130994498 447 + 233722169 AAGCTTGGAGTAAAATGTATGTATTGTCCTTTATCTCCACATTGTCCATATTGAAGTGTGTAGGGATCACTGCTGTACGTAGGATGAGGATCAGCCACTATGACATCTGCCTAA-ACAGTAAaagaaca-----agca-------aacaaaaacaa--attgcaagagcaacagaaaacaaattgCAAGTGCTTTGAAGA-----CAAGCACTTTTGAATCTGCATTAAGAAAAGTTAGATCACTGATTTAAATACAGGAATTAAAGAAAgttatattaacttttaaaaagcataggAAACAATTTAAGAGCTCAGTAGCCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCT

a score=5099
s chr3           144928519 164 + 160039680 CTTACATGCTTGTAACTCTCCTGTTTTGGCCTTCTGTACTGGGAACTGTT---TTTCCAACTCTCAGGAATTAATATAGACACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTAT-----TATCAAAGGGAAAT
s HiC_scaffold_1 131351600 166 + 233722169 CTTACCTTTTCATATGATTCTTGTTTTACTTTGCTGTA------ATTGTTAGCTTTCCATGTGGCAGGTATCAATATCTGTATATTTCTGAAGAACACTCTTCTCTTGGTAGCATTGAAGAGGTAAAAAGAAGCTTCAGTTATCATTTCCTATACACCaaccaaaggaaaat

a score=19096
s chr3           144930490 2285 + 160039680 AAGTGATCTTCTGA-----TGAGAGAAGACTTTGTAAAAGGCTAAGTGTCAAAAGCCACTAAACTATAGACATGTTGGCAAAGGATTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTAGGTCTCTAAAAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAATTTGAAGCCAATCATTTATTCCTGTACAACAAGAATCCACCATTGACAGTC-----TGGTCTTTGT-------------ATTCTATGGGAAAAATATGTTTTAT---CTTTTAGAGTTCAAAGGACACCAGGTA--CGACACCTCTGAGCTGATGGGTGGGTGACAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCATAAGG--AAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGCCCAGTGGGGACGACCCCAAACCAAGTAGAAGTTGTGGATGTTGCTCCTGAGGACGTGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACATGGAATGTTGGAGTTGGAAGAGACTTTATCAAACTAAAGTCCTAGGATTAGTGAGGGGGCCTCTCCCTCTGTTTGCAACCACTTGGTGGGCTCacaccctccacacactggtcatctctaattttcatctaagttcacattttacatctctccatggattcagaggtctgtctcttctacatggatgtcaaaaatctcctcaatctgtaaccacctcgagctcctcctccccaggcacagctctttgttgtagtttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccgttccacacaagaataaaccaacaagag----tgttgtctttcatgctttcaaaatatgttcagcatcac----ttgaatcactcctcaca---cctccTTGTCCCAGGCAATGCTC-CTGTTCATAACCACAGCCTGGCTCCTTCTTCACCCCTAT------CCTGCAATCATACAGT-GATGTGATATGAGTGAGCCTTCTATGGTTTCAGGTAGA--CAGAGCAGTCATAGAATAGACCCCAAAGTGTCCACATCCTCCACTAAGCTCTTTCATGGAGTCTCATTACTTTC----------CAAAGGTCTGGGCT----------------CTGCCTCTGTGCATAAGCCTCTCCCAGCTTCAGTGTAAGACAGACACCCTCCCTCCAGCTTATT--CACTGTTTCCTTG-----ATTATGTGACCTGCTAT---------TACCCA--CATAAGGCT----------------------CTCGTCTTGGCGTCTGCTCACATGTCATATCATGAGTGGGGT-TTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTATGACAGCTGTGCTCT-GCTTTGCCTTGCTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCCACTCACTCTGATATTACTGTGAGGACCTGGAAAAGAAGGCATA-CCCATAATTCC------TTTCTCTTTTAAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCACACACAATAAATAAGTAAATTACAAAAGCAGAACAAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCATTGTCTTTGATCTTAAGGTGAGAAGTTCATATCTCTTCTAGAACCTCTACAACCTTCATCTGGAATGTCTTAGAGCTTTCATCTCACTCCATACCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCATA----GGTTTCCACAGTAACTCTTACTATTACTATTAACCTTTTTATTCTTCATAACTCAAATAGGAGAAAG--CCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGG---TCACCCAGAGGCCTCTCTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAAAATCAC--CTGTTAGCTGATTGTGGGATGGTGACTGTTTAAAGGTCAATGTTCATGTACA---GAAATCACATAGCAGGGTTATAAAATTGGTTTTTTGCTTGGTAATATTTAAAGGTAT-CAGAAAA----------TTATAAAATACATAGCAGCCTTTCTTCTTGAGACATA--------------GTACATTGC-----TTCCCATTTTCAGTTAATTTCCTAAGCATAAACACAGattt
s HiC_scaffold_1 131094752 2099 + 233722169 AAATGATTTTCTGAAACTCTGAAATAGCTCTCTGAAACTGTGTAAAGGTT-------------CTCTGGAAATGTCTATAAATAATTCAATTTCTATTTGTATTGTCTAATAGAGGATCATGTTAAGAATTTTTTC----CCTTACACATGATTCTGTCAAATAGTGATTT-CTGGGTTCATAAATGTTCAAAACCAATTGATTATT--TGAACA-CAAAAGTCTATCACTCAGAATCAGCTGTGCTATCTGTTCCCCAAATCCACACTATTTAGTAAAAGCAACCTTCATTTTCTCCTAGAATTCCATAGATACCAATAAGCAAACACCTTTGTGTGGCAACAGAATTTGTAAAGAATGAATGATAAATGTCATCCA--TGGCATTAGCAGGTTGTCACTCAGGTCATGcacattaaaaagtttaaacagGACC---------------------------------TAGGAATGGAGGATTTTAAT------------AGAAAGAATTGT----TCGATATTGATTTCTCTC---------TTGGAGGT------------------CTAAAG------------------GGCATCTC------------------------------ATCTTCAAAACACC-------------------CCAAACTAAC--TCTGCATCTCCCAAC------------------------------TGCCAAATAT--------------------------------TCTccacttacattttttt----------cccttcccagttaCAGAAAATCTCATGTTTCCAAGT-GTTCAGGCAGAGCCTTGAAGCCTTCTTCAGCTCtta-catttcctt----ccttccctgtcccACATAC-----ACCCGACCATAGGCCATATCACCTGTGAAACCCGTAAAATACCttgacaatcacacattttaataGTCTCTACCATGACCTCCCTGTCCTACTCCCTGCTCACCAGCCTTAGCTCCTTTCCTGGTTCTTCTAAACTTCTGTGTGACAACAGCATTCATGCAGGAGAGGTGACAATGGAAATCTTCCCCCACTTTCTCCACGCTTCAGAGGGACCCCAGAAGACATACAAGAGGACACACCTCTGCTCAGAAGC-CTTCCGTGGGTGCTCTTCTCACTCAGGATAAAAGCTCAAGTCTGTCCTGTGATCCGGAGAGTGGCTGCCACTGCAGCTTTGCCGCCCCCT------------------TGCCCTTCCTCCTGCTCATTGCTGTTGTGTTCTTGGGCTCACCAATCAGTCTCTTATCCTTCGGTGTTCCCATCCAGCAGGTTTGGGGGGGGGGCTCCTCTCTCACTCATCTCTGTCTCTGCTCAGATGTCACATCCTCAGTGCTGTCTTCCCTGA---CTCCCCTACATTCAACAGTAGCTCAAATTCT---CTGTTCCAGCTACATCctcattctgttctcttttcttgatTTACTGTACTGCAGAGAAACTCCCTGCCTTCTCATCAGCTGCGTTACTCA--------TTTCTATCATGTCTCTTAAAAGAATACACAATCCATGAGGCCAGGAACCTTTTTCTGTAATTCATGGCTCTTTCTTCCAACATGACAtaagcattt--------------aataaataatta--tttcaagATCA---TGTGAACCAAAGAACTAagttccagatgaggaaactgaggctcagggaggacCTGAGCTCTGT-TCTGCTCTTGAGACAAA----------------CGGAACCC-------------------TGTCTAGGA--CTCCACTTAACTTCTGTCCCTCCAGCACTGTCCTTATCTGTTCCAAGCTTCTTTGAATCTTCCTGCAACAGTTTCCATAATAAC-----CAGTcactattaa--ttttctttcctcataATTCAAACTGAAGAAATTTCCTTTTTGCCTTACCTTTATGTGTTCAATTATTTGGGGATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCGTTTGAGTCCCCCAGCAGGTGCAGGACTAAGAGGGG---AGCGAGGGCTCTGAACAACCCCATGGTTCCTCTCCAGAGCTTTCCCGACG--CTcgttttccccttttctttcacCATATATATACACAGTCCT-AAAATCATGAGTGTTGGCCAATTATGGGAAGTTGGCTGTATAAAGGTC-ATGGTAGTATATATGGGAAAAGGTATGACTTCAATTTACACAGGTTTTATTGT------ATGTCAAGAGACATGCAGGAAATCAAATCTTTTTACTATGTACtccacatttttctcttctgagGCATATTTTTCCatgattcatatatttttatagtgCCTAATTCTGGTTAATTTCCTAAATGTAGACATGGAGTT

a score=27955
s chr3           144930513 2115 + 160039680 ACTTTGTAAAAGGCTAAGTGTCAAAAGCCAC-TAAACTATAGACATGTTGGCAAAGGA-----TTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTAGGTCTCTAAAAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAATTTGAAGCCAATCATTTATTCCTGTACAACAAGAATCCACCATTGACAGTCTG--------------------GTCTTTGTATTCTATGGGAAAAATATGTTTTAT--CTTTTAGAGTTCAAAGGACACCAGGTAC--GACACCTCTGAGCTGATGGGTGGGTGACAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCATAAGGAAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGCCCAGTGGGGACGACCCCAAACCAAGTAGAAG---TTGT-GGATGTTGCTCCTGAGGACGTGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACA-----TGGAATGTTGGAGTTGGAAGAGACTTTATCAAACTAAAGTCCTAGGATTAGT----GAGGGGGCCTCTCCCTCTGTTTG----------CAACCACTTGGTGGGCTCacaccctccacacactggtcatctctaattttca----------------tctaagttcacattttacatctctccatggat------tcagaggtctgtctctt---------ctacat--ggatgtcaaaaatctcctcaatctgtaaccacctcgagctcctcctccccaggcacagctctttgttgtagtttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccgttccacacaagaataaaccaacaagag-tgttgtctttcatgctttcaaaatatgttcagcatcacttgaatcactcctcacacctccTTGTCCCAGGCAATGCTC--CTGTTCATAACCACAGCCTGGCTCCTTCTTCACCCCTATCCTGCAATCATACAGTG---ATGTGATATGAGTGAGCC----------TTCTATG-------GTTTCAGGTAGA-------CAGAGCAGTCATAGAATAGACCCCAAAGTGTCCACATCCTCCACTAAGCTCTTTCATGGAGTCTCATTACTTTCCAAAGGTCTGGGCTCTGCCTCTGT--GCATAAGCCTCTCCCAGCTTCAGTGTAAGA-CAGACACCCTCCCTCCAGCTTATTCACTGTTTCCTTGATTATGTGACCTGCTATTACCCACATAAGGCTCTCGTCTTGGCGTCTGCTCACATGTCATATCATGAGTGGGGTTTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCT-ATGACAGCTGTGCTCTGCTTTGCCTTGCTCTT--CTGAGGCAGCGTGCTCCACAGTAACCTACT----AACCTCATACCTACTCTCCCACTCACTCTGATATTACT--GTGAGGACCTGGAAAAGAAGGCATACCCATAATTCCTTTCTCTTTTAAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCACACACAATAAATAAGTAAATTACAAAAGCAGAACAAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGATCACAGAGGCTCTCTGCATTGTCTTTGATCTTAAG----GTGAGAAGTTCATATCTCTTCTAGAACCTCTACAACCTTCATCTGGAATGTCTTAGAGCTTTCATCTCACTCCATACCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCATAGGTTTCCACAGTAACTCTTACTATTACTATTAACCTTTTTATTCTTCATAACTCAAATAGGAGAAA-GCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-AGAGGCCTCTCTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAAAATCACCTGTTAGCTGATTGTGGGATGGTGACTGTTTAAAGGTCAATGTT----CATGTACAGAAA
s HiC_scaffold_1 131257583 2056 + 233722169 ACTTTGTAGAAAACTGAGTATCAAGAAACATGTGAAGTCTAGGCATGTCtgcaaagaacaaaattaaatttctctCTGTAGCATTCAAAAGTTGACCATGTTAAGAAGTTTTCT--GCTTTTAGAAACAATTCTATCAAATATT-GGTCTCTAGGCTTATAAATGTTTGTACCAAAT--TTTATCTCTGAACACTAATAGTCTATAATTCTGAATCAGCTATGTTATCTGCTCCTCAAGCCTATGTACTTTATT--AAAAGTTATCTTTATTGCTCCTGGAATTCAAAAGGCATGAGTAATTGAGCACTTCTGTGCTACAACAGCATTTATGAAGAATTAATGAAGAATGGTAACCA--TGGAATCGCAAAGT---CTCACCTGTAGCTTAGAAG--ATTTGAACAGTAAAGATTAGTACCCAGGAGAGGAGA-----AATTGAATATAAGGAATTGTTAGCTGTTGAAGtcaggaaaagggaaaataatcaaATACCTTAAGTAGCAATCTCTATACTATATGAAATACCACTGttggaaaaa--tatagaaaattagagTCATTGGATCTGTCTTGGAGattttctctccctccatctgtcCTTCCTGACATCTAC-----GGACTCATATCATCTACATGTTGATGACTGtcaatttttagaagttttacagtGAATTCAGATTCTCATTTTAA---TCTACATGAATAGGGTCtgaaatgcatatttatttagaAATGGCTAAATTCAGATTTCTAAAATATACCAAATTT---------------------TCTCCactttcagtctttt------------ctttccagtTGATAATAGTGCCATCTTTCCAAGT-GTTCAGGCAAAATTTGAAGTCTT--CTCAactctta-cattttcttctttcctgccttACCCCACGTACATCTAAACCATCAGGAAATCTTGTCTATGACACCCTCAAAATATATTCAGAGTCAT---AAACATCCCTG-----TCTTAGTTACCATCACTTCTCACCTGTCCAAACTCCCTGCCTGG-TCCTTCTGCACTTCTGTGAGGC-----CACAGTGTTTATACAGGATGAATGAGCCACAAACCCTCCTCCATATCCCTCTGCCTCAGTCACAGTGACCCCCGAACACGCATGGGA--GCATGAGAAGTGAGCCCGTCTTCC----------------------CAGTGGTCTCTCCAGGTCCAGCTCCTGCATTTTTCCTCCTCAGTCACCACTTTTTTTGTTGCCACATCAAGCAGCCTCTCACCTCCATGCTCTTCGGGTCCCGCAGGTTTCCAAGGGCCTCTTCCCCCA-------CTCGTTGCGGCCCCTGGCCAGGCGTCACATGCTCAGCGAGGTCTTCCTGA---CTCCCCCACATACAGCAGTACCTCACGTCCTCCCCTGATTGCAGCCACAGCCCCCTCTGTATTCTCCTTTCCTGATCTTACATACTCTGCAGCAATCTCTTGCCAAACCACTTGGCACTTTATTCATCTTTTCAAATTATACTCCGTGAGG--------------------CTAAAggcctttttctctttaattcacTGTTCTCTCCTC-------CAGCACAC-------CATGagtatttagtaaatatttacctCATGT-----------GACTCTAAGAGCtaatttacagatgagaaaactgagg-ctcagggatgcCCTg-agtctttttgcttttttgtggcGAGATAGGATTGAACCCTGTCCACGactccatctccctctgtc---------------cctccagcACTGACCACACTATCTCAGGCTGCTTCTTCT----------TTCCTGTAGCACTCAGAG--TTCTATAATAGT-----CGATCATTATTAG--TTTTTTACCTTCATGATTGGTACAGAAGAAACGCCCTTCCTCCTTACCTTTATGTGTTCAATTATTTCTCCATCTTCTGGCACATCAGGATCTATAGCAACGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCCCCAGCAGGTGCAGGACTAAGAGGGG---AACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATG--TATATATACTCCTAAAAATTATCTGTT-GTTGATTATGGGATGGAGACTGTGTAAAGGTCAATGTTAttacacatacagaaa

a score=25900
s chr3           144930513 2326 + 160039680 ACTTTGTAAAAGGCTAAGTGTCAA-AAGCCAC-TAAACTATAGACATGTTGGCAAAGGA-----TTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTAGGTCTCTAAAAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAATTTGAAGCCAATCATTTATTCCTGTACAACAAGAATCCACCATTGACAGTCTG--------------------GTCTTTGTATTCTATGGGAAAAATATGTTTTAT--CTTTTAGAGTTCAAAGGACACCAGGTAC--GACACCTCTGAGCTGATGGGTGGGTGACAGAGAATGCATGGCAAGTGGAAGCCAACTGAAATCATAAGGAAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGCCCAGTGGGGACGACCCCAAACCAAGTAGAAG---TTGT-GGATGTTGCTCCTGAGGACGTGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACA-----TGGAATGTTGGAGTTGGAAGAGACTTTATCAAACTAAAGTCCTAGGATTAGTGAGGGGG----CCTCTCCCTCTGTTTG------CAACCACTTGGTGGGCTCacaccctccacacactggtcatctctaattttcatctaagttcacattttaca----tctctccatggattcagaggtctgtctct-tctacatggat---gtcaaaaat-ctcctcaatctgtaaccacctcgagctcctcctccccaggcacagctctttgt-----tgtagt-ttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccgttccacacaagaataaaccaacaagag-tgttgtctttcatgctttcaaaatatgttcagcatcacttgaatcactcctcacacctccTTGTCCCAGGCAATGCTC--CTGTTCATAACCACAGCCTGGCTCCTTCTTCACCCCTATCCTGCAATCATACAGTG---ATGTGATATGAGTGAGCC----------TTCTATG-------GTTTCAGGTAGA-------CAGAGCAGTCATAGAATAGACCCCAAAGTGTCCACATCCTCCACTAAGCTCTTTCATGGAGTCTCATTACTTTCCAAAGGTCTGGGCTCTGCCTCTGT--GCATAAGCCTCTCCCAGCTTCAGTGTAAGA-CAGACACCCTCCCTCCAGCTTATTCACTGTTTCCTTGATTATGTGACCTGCTATTACCCACATAAGGCTCTCGTCTTGGCGTCTGCTCACATGTCATATCATGAGTGGGGTTTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTATGACAGCTGTGCTCTGCTTTGCCTTGCTCTT--CTGAGGCAGCGTGCTCCACAGTAACCT--------ACTAACCTCA-TACCTACTC----TCCCACTCACTCT----GATATTACT--GTGAGGACCTGGAAAAGAAGGCATACCCATAATTCCTTTCTCTTTTAAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCACACACAATAAATAAGTAAATTACAAAAGCAGAACAAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGATCACAGAGGCTCTCTGCATTGTCTTTGATCTTAAGGTGAGAAGTTCATATCTCTTCTAGAACC---TCTACAACCTTCATCTGGAATGTCTTAGAGCTTTCATCTCACTCCATACCTTCCAAAACTGTCTGCTCTGTTTTCAAACT----------TCTCAAAGCATTCATAGGTTTCCACAGTAACTCTTACTATTACTATTAACCTTTTTATTCTTCATAACTCAAATAGGAGAAA-GCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-AGAGGCCTCTCTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAAAATCACCTGT-TAGCTGATTGTGGGATGGT-GACTGTTTAAAGGTCAATGTT----CATGTACAGAAATCACATAGCAGGGTTATAAAATTGGTTT--------TTTGCTTGGTAATATTTAAAGGTAT-------------CAGAAA---------ATTATAAAATACATAGCAGCCTTTCTTCTTGAGACATAGTACATTGCTTCCCATTTTCAGTTAATTTCCTAAGCATAAACACAGatttatttatttatttatt----tatttatttatttatttatATAACTGGATTTGTTCTTTGATAGAAAATA
s HiC_scaffold_1 131123756 2298 + 233722169 ACTTTGTAGGAAACTGAATACCAAGAAACTATGTGAAGTCTAGGCATGtctgcaaaaaacaaaattaaatatctcTTTGTAACTTTCAAAAGATGATCGTATTAAGAAGTTTTC---GCTTTTAGAAACAATTCTATCTAATA-ACGGTCTCTAGGCTTATAAAAGTTTGTACCAAAT--TTTATCTCTGAACACTAATAGTCTATAATTCTGAATCAGCTATGTTATCTGCTCCTCAAGCCTATGTACTTTATT--AAAAGTTATCTTTATTGCTCCTGGAATTCAAAAAGCATGAGTAATTGAGCACTTCCGGGCTACAACAGCATTtatgaagaatgaatgaaaaatggtAACCA--TGGAATCGCAAAGT---CTCACCTATAGCTTAGAAG--ATTTGAACAGTAAACATTAGTACCCAGGAGAGGAGA-----AATTGAATATAAGGAATTGTTAGCTGTTGAagtcaggaaaagagaaaataatcaaatacCTTAAGTAGCAATCTCTATACTATATGAAATACTACTGttggaaaaa--tatagaaaatta--gtCATTGGATCTGTGTTGAAGactttctctccctccatctgtcCTTCCTGACACCTA-CGGACTCATATCATCTACATGTTGATGActgtcaattttttt----------attttatagaagttTTACAGTGAATTCAGATTCTCATTTTAATCTACATGAATAGGGTCTGAAATGCACATTTATTTAGAAATGGCT-AAATTCAGATTTCTAAACTACCAAATTTTCTCCactttcagtcttttctttccagtTGATAATAGTGCCATCTTTCCAAGT-GTTCAGGCAAAATTTGAAGTCTT--CTCAactctta-cattttcttctttcctgccttACCCCACATATATCTAAATCATCAAGAAATCTTGTCTATGACACCctcaaaatatattcagaatcAT---AAACATCCCTG-----TTTTAGTTACCATCACTTCTCACCTGTCCAAACTCCCTGCCTGG-TCCTTCTGCACTTCTGTGAGGC-----CACAGTGTTTATACAGGATGAATGAGCCATAAACCCTCCTCCATATCCCTCTGCCTCAGTCACAGTGACCCCCGAACACGCATGGGA--GCATGAGAAGTGAGCCCGTCTTCC----------------------CAGTGGTCTCTCCAGGTCCAGCTCCTATATTTTTCCTCCTCAGTCACCACTTTTTTTGTTGCCACATCAAGCAGCCTCTCACCTCCATGCTCTTCGGGTCCCGCAGGTTTCCAAGGGCCTCTTCCCCCA-------CTCATCGCGGCCCCTGGCCAGGCGTCACATGCTCAGCAAGGTCTTCCTGA---CTCCCCCACAAACAGCAGT-----CCTCCCTTG---ATTGCAGCCACAACCCCCTCTGAATCGTCCTTATCTGATCTAACATACTCTGCAGCAATCTTGGTAAGAACCAATCTTGGTAAGAACTCGgcattttattcatctttccAAATTGTACTCCGTGAGG--------------------CTAAAggccttttcccctttaattcaCTGTTCTCTCCTC-------CAGCACAC-------CATGagtatttagtaaatatttacctCATGT-----------GACTCTAAGCGCTAATTTACAGGTGAGGAAAGTGAGG-CTCTGGGATGACctgagtt-ttttggtttttttggtgaGA----------TCGGATTGAACCCTGTCCACGac------------------------tccatctccctctgt-ccctccagcACTGACCACACTATCT-CAGGCTGCTGCTTCTTTCCTGTAGCACTCAGAG--TTCTATAATAGT-----CGATCATTATTAG--TTTTTTACCTTCATGATTGGTACAGAAGAAACGCCCTTCCTCCTTACCTTTATGTGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCCCCAGCAGGTGCAGGACTAAGAGGGG---AACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATG--TATATATACTCCTAAAAATTATCTCTGCTGTTGATTATGGGATGGGAGACTGTGTAAAGGTCAATGTTAttacacatacagaa---aaata-------tgtgACTTTAGCTTCCACAATATTTATTGCACATTATTGAAAAGTGTTCAAGCGGCATAATAGAAATGGAATATGTTTATCAAATGTACTGCACATTTTCTTCCTGATAC--TGTTTTATACTTCCTAATTTTCAATAATTCCCTAAATATAGGCATAAACTTTACAGTTTATAGAATGTAATGTGAACTTTATAGTTTATAGAATATAATGTGAACTTT-ATAGAATGTA

a score=26727
s chr3           144930548 2227 + 160039680 CTATAGACATGTTGGCAAAGGATTGAATTTGTACTTGTAATATTCAATAGAAGACTATGCTGAGAATTCTTTTAGGTCTCTAAAAATAGTCTTATCAAATATCCATTTTCTGAATTCAAAAAAATTTGAAGCCAATCATTTATTCCTGTACAACAAGAATCCACCATTGACAGTC-----TGGTCTTTGT----------------ATTCTATGGGAAAAATATGTTTTATCTTTTAGAGTTCAAAGGACACCAG--GTACGACACCTCTGAGCTGATGGGTGGGTGACAGA---------GAATGCATGGCAAGTGGAAGCCAACTGAAATCATAAG--GAAAATTCAGTTCATGCCCAGCAGGGAGCTCAACAACGAGCATTGGGGCCCAGTGG-GGACGACCCCAAACCAAGTAGAAGTTGTGGATGTTGCTCCTGAGGACGTGAGAAATGAT-CATGTAGCTGAAATGGCAGTCTTT-----ACATGGAATGTTGGAGTTGGAAGAGACTTTATCAAACTAAAGTCCTAGGATTAGTGAGGGGGC--CTCTCCCTCTGTTTGCAACCACTTGGTGGGCTCacaccct---ccacacactg--gtcatc---------tctaattttcatctaagttcacattttacatctctccatggattcagaggtctgtctcttctacatggatgtcaaaaat-ctcctcaatctgtaaccacctcgagct---------cctcc--------------tccccaggcacagctctttgttgtagtttcccttcccagctgatgaaagt----tctctacaagtagttaagccaaagttggaaagtttgccttgcctcttaacatttcctctctaccttctccgttccacacaagaataaaccaacaagag----tgttgtctttcatgctttcaaaatatgttcagcatcac----ttgaatcactcctcaca---cctccTTGTCCCAGGCAATGCTC-CTGTTCATAACCACAGCCTGGCTCCTTCTTCACCCCTAT------CCTGCAATCATACAGT-GATGTGATATGAGTGAGCCTTCTATGGTTTCAGGTAGA--CAGAGCAGTCATAGAATAGACCCCAAAGTGTCCACATCCTCCACTAAGCTCTTTCATGGAGTCTCATTACTTTC----------CAAAGGTCTGGGCT----------------CTGCCTCTGTGCATAAGCCTCTCCCAGCTTCAGTGTAAGACAGACACCCTCCCTCCAGCTTATT--CACTGTTTCCTTG-----ATTATGTGACCTGCTAT---------TACCCA--CATAAGGCT----------------------CTCGTCTTGGCGTCTGCTCACATGTCATATCATGAGTGGGGT-TTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTATG--ACAGCTGTGCTCT-GCTTTGCCTTGCTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCCACTCACTCTGATATTACTGTGAGGACCTGGAAAAGAAGGCATA-CCCATAATTCC------TTTCTCTTTTAAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCACACACAATAAATAAGTAAATTACAAAAGCAGAACAAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCATTGTCTTTGATCTTAAGGTGAGAAGTTCATATCTCT-TCTAGAACCTCTACAACCTTCATCTGGAATGTCTTAGAGCTTTCATCTCACTCCATACCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCATA----GGTTTCCACAGTAACTCTTACTATTACTATTAACCTTTTTATTCTTCATAACTCAAATAGGAGAAAG--CCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCCAGAGGCCTCTCTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCC-----------------------------------TAAAAATCACC-----TGTTAGCTGATTGTGGGATGGTGACTGTTTAAAGGTCAATGTTCATGTAC---AGAAATCACATAGCAGGGTTATAAAATTGGTTTTTTGCTTGGTAATATTTAAAGGTAT-CAGAAAA----------TTATAAAATACATAGCAGCCTTTCTTCTTGAGACATA---------------GTACATTGC-----TTCCCATTTTCAGTTAATTTCCTAAGCATAAACACAGattt
s HiC_scaffold_1 131170204 2318 + 233722169 CTCTGGAAATGTCTGTGAATAGTACAATTTCTATTTGTGTTGTCTAATAGAGGGTCATGTTACGAATTTTTTC---CCCTCACACATAATTCTATCAAATAGCGATTT-CTGGGTTCAGAAATGTTCAAAA--AGTTAATTAT--CTGAACACTAA-AATCTATCATTCAGAATCAGCTGTGCTATCTGTTCCCCAAATCCACACTATTTAGTAAAAGCAATCTTCATTTTCTCCTACAATTCCATAGGTACCAATAAGAAAACACCTTTGTGT---------GGCAACAGAATTTATGAGGAATGAATGATAAATGTCATCCA--TGGCATCAGCAGCTTTCCACTCAGGTCATGCACATTAGAAAGTTTAAACA---------GGACCTAGGAATGGAGGATTTTAGGAGAA--AGAACTGTTAGATATTgatgtcaagaaaaagaaaaataattcatatagCTGAAATAGCAATATCTGTGCTACATGGAATGTTAGAGTgggaagaaattttagaaaattggaGTCCTTGAGCAACTTCTGGAGtgattccttttctgtttttactcACTCAGTGGACTCATATTATGGCTGAGTCACTGATGTCATTGATTGGCTTTCAAATTTTTATGTATGTGCAA---TTATTTTTTACCATGAATTCAGATTTGTATTTTCTCTACTTGGAGGTCTAAAGTGCATCTCATCTTCAAAACACCCCAAACTAACTCTGCATCTCCCAACTGCCAAATATTCTCCACTTAcaatttttt----------cccttcccagttaAAGAAAATCTCATGTTTCCAAGT-GTTCAGGCAGAGCCTTGAAGCCTTCTTCAGCTCtta-catttcctt----ccttccctgccccACATAC-----ACCCGACCATAGGCCATATCACCTGTGAAACCCGTAAAATACCttgacaatcacacattttaataGTCTCTACCATGACCTCCCTGTCCTACTCCCTGCTCACCAGCCTTAGCTCCTTTCCTGGTTCTTCTAAACTTCTGTGTGACAACAGCATTCATGCAGGAGAGGTGACAATGGAAATCTTCCCCCACTTTCTCCACGCTTCAGAGGGATCCCGGAAGACATACAAGAGCACACACCTCTGCTCAGAAGC-CTTCCGTGGGTGCTCTTCTCACTCAGGATAAAAGCTCAAGTCTGTCCTGTGATCCGGAGAGTGGCTGCCACTGCAGCTTTGCCGCCCCCT------------------TGCCCTTCCTCCTGCTCATTGCTGTTGTGTTCTTGGGCTCACCAATCAGTCTCTTATCCTTCGGTGTTCCCATCCAGCAGGTTTGGGGGGGGGGCTCCTCTCTCACTCATCTCTGTCTCTGCTCAGATGTCACATCCTCAGTGCTGTCTTCCCTGA---CTCCCCTACATTCAACAGTAGCAGAAAATCTCCCCTCTGTTCCAGCCACATCctcattctgttctcttttcttgatTTACTGTACTGCAGAGAAACTCCCTGCCTTCTCATCAGCTGCGTTACTCA--------TTTCTATCATGTCTCTTAAAAGAATACACAATCCATGAGGCCAGGaacctttttatttaattcatggcTCTTTCTTCCAACATGACAtaagcattt--------------aataaataatta--tttcaagATCA---TGTGAACCAAAGAACTAagttccagatgaggaaactgaggctcagggaggacCTGAATGCTGT-TCTGCTCTTGAG---AGAAA--CGGAACTCTGTCTAGGAC---------------------------------TCCACTTAACTTCTGCCCCTCCAGCACTGTCCTTATCTGTTCCAAGCTTCTTTGAAACTTCCTGCAACAGTTTCCATAATAAC-----CAGTCACTACTAA--TTTTCTTTCCTCATAATTCAAACTGAAGAAATTTCCTTTTTGCCTTACCTTTATGTGTTCAATTATTTGGGGATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCCTTTGAGTCCCCCAGCAGGTGCAGGACTAAGAGGGG---AGCGAGGGCTCTGAACAACCCCATGGTTCC--------TCTCCAGAG------CTTTCCCGACGCttgtttccatatatatatacacaccatatatatatgtatatatatatatgtatatatatatatatataatcatgagTGTTGGCCAATTATGGGATGTTGGCTGTATAAAGGTC-ATGGTAGTATATGTGGGAAAAGGTATGACTTCAATTTACACAGGTTTTATTGT------ATGTCAAGAGACATGCAGGAAATCAAATCTTTTTACAATGTACtccacatttttctcttctgagaCATATTTTTCCCatgattcatatatttttatagtgCCTAATTCTGGTTAATTTCCTAAATGTAAACATGGAGTT

a score=19361
s chr3           144931320 1402 + 160039680 aacatttcctctctaccttctccgttccacacaagaataaaccaacaagagtgttgtctttcatgctttcaaaatatgttcagcatcacttg-------aatcactcctcacacctccTTGTCCCAGGCAATGCTCCTGTTCATA-ACCACAG-------CCTGGCTCCTTCTTCACCCCTATCCTGCAATCATACAGTG---ATGTGATATGAGTGA-------GCCTTCTATGGTTTCAGGTAGACAGAGCAGTCATAGAATAGACCCCAAAGTGTCCACATCCTCCACT--AAGCTCTTTCATGGAGTCTCA--------------------TTACTTTCCAAAGGTCTGGGCTCTGCCTCTGTGCATAAGCCTCTCCCAGCTTCAGTGTAAGACAGACACCCTCCCTCCAGCTTATTCACTGTTT---CCTTGATTATGTGA-------------------------------CCTGCTATTACCCACATAAGGCT-------CTCGTCTTGGCGTCTGCTCACATGTCATATCATGAGTGGGGTTT-CTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTATGACAGCTGTGCTCTGC--TTTGCCTTGCTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCCACTCACTCTGATATTACTGTGAGGACCTGGAAAAGAAGGCATAC-CCATAATTCC--------TTTCTCTTTTAAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCACACACAATAAATAAGTAAATTACAAAAGCAGAACAAGAATCCAACTTCTAAATGACAGACAAGGAAGCTGAGA-TCACAGAGGCTCTCTGCATTGTCTTTGATCTTAAGGTGAGAAGTTCATATCTCTTCTAGAACCTCTACAACCTTCATCTGGAATGTCTTAGAGCTTTCATCTCACTCCATACCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAA--------GCATTCATAGGTTTCCACAGTAACTCTTACTATTACTATTAACCTTTTTATTCTTCATAACTCAAATAGGAGAAA-GCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-AGAGGCCTCTCTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAAAATCA--CCTGTTAGCTGATTGTGGGATGGTGACTGTTTAAAGGTCAATGTT---CATGTACAGAAATCACATAGCAGGGTT---ATAAAAT----TGGTTTTTTGCTTGGTAA-------TATTTAAAGGTAT--CAGAAAA-------TTATAAAATACATAGCAGCCTTTCTTCTTGAGAC
s HiC_scaffold_1 131217945 1404 + 233722169 aaaattttttcttttctttcttt-----aaataaagttaaaaaaa-agaaatgttgccTCTGATGCTCTCAAAATATGTTCAGAATCACATACTTTAATGATCTCTACAACCACCTCCCTGCCATGGTCACCATAGCTGCTCACCTGCCACAGGTCCATATCTGATTC-TTCTATGTGTCTATGCTGTGG-----CAGAGTTCATGTAGCATGGGTGACAGTGCAGCTATCTCCTGTTTTC--TTCGCATCACAGTCAGAGT---GATCCCAGAG----CATGTCTCCTGCTTAAAAGCCTTTCATGGATTATCAGCTCAGAGTAAAAGCTCAAATTA--TCCCAAGGGTCTGGGCTCTGC---------------TCTATCAGCTTCA-TGAACGCCAG---TCCTTCCTCCTGTTCAGTCACTGTCATCACCTTAGTCATCTCAAGCAGGTTTCTAACCTTCATTCTAGTGCTATCCTGCAGGTGGCCAAGGGGGTCTTCCCTCACTCCTCTCAGTCTCTGCCTAGATGTTACCGTGCCAGTGAGTTTTTCCCTGA---CTATCCTCCATGAGAGAGGTTCT----CTCT---CTGTGCAAGCCACACCCCTCAATTTATGTC-CTCTGTCTATATATCGTAACCCTCAGAAACATAATA---TCTGACCtgctattttattcatttt--tcttaattatatgtCTT--AAATGTATGTATACTCCATGATGCCAGATGCTTTATTTTCTGTAGTTCACTGCTCTCC---------TTCAGCATGCATAAG--------CATTCAATAATTAA-----TTATTTATGCAATAGATATATCCTACAGctaatttacagatgaggaaaccaaggctcagagaggAGCC------TGTCTTTGGTCTTGTAGTGAGA---------------CAGGAT----------------TGAACCGTATCCAGGACTTCATCTCTCTCTGCCCCTCCT----CTGTCCACACTACATCAATATGCTCTAAACTTATTTGGCATTCAGAG--TTTCAAAATAAT-----CAGTCATTATCAGT-TTTTTAACCTTCATAATTTGTACAGAAGAAGTGTCCTTCCTCCTTACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAGCCCCACAGCAGGTGC---AGGACTAAGAGGGAAGCGAAGGCTCTGAACAGCCCCATTGTTCCCCTCAAGTCGTTTGAAAAGCTTTTATTGTGACTTGTTTTTCTCCACGTATATATATACTCCTAAAAATTATCTCTGTTA-CTGATTAGGTGATATTGACTGTGTAAAGGTCAGTGTGACACATGGGAGAAGATATTTTACTTCAATTtgcataatattttattgtattttact--gtAAATCAAATGATCAAGAGGCATAGCAGAAACCCaaactttataaaatgtattGCACATTTTCTTCTTGATAC

a score=11807
s chr3           144932037 601 + 160039680 AAATTACAAAAGCAGAACAA-GAATCCAACTTCTAAATGACAGACAAGGAAG----CTGAGATCACAGAGGCTCTCTGCATTGTCTTTGATCTTAAGGTGAGA--AGTTCATATCTCTTCTAGAAC-----CTCTACAACCTTCATCTGGAATGTCTTAGAGCTTTCATCTCACTCCATACCTTCCAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCATAGGTTTCCACAGTAACTCTTACTATTACTATTAACCTTTTTATTCTTCATAACTCAAATAGGAGAAAGCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-----------AGAGGCCTCTC----TTTCTCTGTGTCTCTTGGCAGGTCTATAT-ATACTCCTAAAAATCACCT----GTTAGCTGATTGTGGGATGGTGACTGTTTAAAGGTCAATGTTCATGTACAGAAATCACATAGCA
s HiC_scaffold_1 131047008 582 + 233722169 aaatttcaaagttaaaaaaatgagTCCAAGAGCTTATTTACAGATGAGGGAGGAAACTGAGATTCGAGGAGGTCATGGACTTGTCTTTGGCCTTGTAGTGGGACAAGGTGGGACCCGGTGCAGGACTCCAtctctttctgcctctccagCATGGTCTT----------TTTCACACCATGCTGCT--------TCTGGACTCCCTGCAATATCCCCACAG-----ATATATTTCCACAATAATCGTT-----TGCTATTAAC---TTTGTTCTCCACAATTCAAG-------AAATCTGAC---CTTACCTTTATGCGTTCAATTATTTGTCTATCTTCTGGCACATCAGGATCTATTGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCTGCAGCAGGTGCAGGACTAAGAGGGG---AGCGAGGGCTCTGAACAGCCCCATTGTTCC--TCTGTTCCTTCTTGGTTTGAATGGTGGTTTGTCAAGTTTGTCTTTTGCGTTTTCTTAGCTTTTTCTCACACTCACACATACCATATCAGCATGGGCTGATTATGGAATATTAACTGAATAAAGGTCAGCCT-----TACATATGTCATAAAACA

a score=5526
s chr3           144932325 150 + 160039680 TTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGAAAAC
s HiC_scaffold_1 130996290 150 + 233722169 ttctcttaccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTTCACCTCAGGCAAGAGATGCAAAGCTAAGAGCAGAATAAC

a score=5766
s chr3           144932329 142 + 160039680 CTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCCCATTCAGCTTTATCAAGGAAGTGTCT---GACCCCCAAAGCAGGTACAAGAGGAAGAGGAGGA
s HiC_scaffold_1 131313332 145 + 233722169 CTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGA

a score=40124
s chr3           144951725 2526 + 160039680 aagccatatttttgctaacttgGTCTCATGGAAGAATTGTAAGAATAACCTGCAATGTGTGAATCTATTCTTCTCAAACTCCTTTCTTCCTCTCCTTAACTCCTTTCCATCAATATGCTTGAGACCCCTAGGTTGTGCCTCTGAATGATGGGCTAAAATGTATCTTTAACATAC---------------TTTGCTTTTTGTTCTCTGAAAA-AAAGTCAATAGTCTATAGCTTCAACAATTCTTTCTTAAGATGAATGAAATGCACATAGGTAGAAGGG--GTTTCATGAGACAAGAGGTGTTTCAGTTATATTGAAATATAACCAGGTGGTATCTGATTTAAaaaacaaaacaaaacaaaacaaaacaaaacaaaacaGTATCTTCCTGggcccagaataaagacagttgctgccaaacatgacaagaggagtttgttttgtaggacccacaatttggaaggagagaacccattcccacaaattttcttctgatctccacattcacatgactgcacatacatacatgcacctatacCCCTTTATTAAACCATAACCCTTATTATG-ATAAAGATGAGTTGTGGGTTTTGAGTTAATT--ATGCCATTAACTTATATTGATAATACCAAGAGCTAGTTCCTTTTTTTTTTCCTGTAAATGTTGTTGATTTTCTCTTTTATATTTTATCCTAGGTACTTAATTAGA-GACTTGAATTTCTTCAGGCAATTTGAAGTATCATTTCAGAAATCTTCTACATCAGAAAA-AATACACAAATAGAGATCAAAATAAA--ACCAGTTTTATTTATCACTATGATAAG----------------ttaataaaattataaatattaatattG----------------GTAGCTTTTCACAGAATGGGTGTGCTTA---------AAGTAT--TTTTTAGACCCTCTTGAAGTTACTTTTG-AGTTCATGATGACATGGGATATGCTTTAAAAACTCAAAAATATCTTTT--TTAT-TCATGTTATCTTTCAAAATTTTGTTATAGCTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATTGTGGTACCTACAATAATACAAACTAGAACAAGAGCGCCCAAAACAGACAGCACAATAGTAGCAACACTAACTCC----TGATAA-----------ACTTGGA------------------------CTTTCATCAGGGTCAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGACAAAAATGTTATGTGTGGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTCACAAATACTA---AGTCATACATCAACAGTCTTATTCATTTTTCTGTAAAAGCTGAGTTCTGAAatttatttgtttatttatttatttatttTGGTGtttcgaggcagggttcaa--cgctatatcccagctgtcctggaactcactgtgtagaccaggctggcctcaaactca---gaaataagctgcctttgcctctgcctctgcctctgcctc---tgcctctgcctctgcctctgcct-----ctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgccaagtcctgggattaaaggcatgtgccactattgcccCCACTGAGTTCTGACTTTAAAAGACAGCTATGCAGGGAAAGTAAGACCTGTTTCAT------AACATCCTAAAATTCCTACTTGACTGAGTTGTCAGTCATAAGTGC---TCTCCTCTAGCTGACCTATCTGTTCTTGCTTCATCC-----CATCTCTCACT-TAGGTCAAACCCAGAGGGGTCCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTATACATCAGGCAATGGACCAATTGGAACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATCCTCCAAGACTGGCTGAGTAGCCTCAGTCGTTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGCATTTAAAATTCTCTA-TTTAAATTGGATGGAACT------GTAAACTTTATAGAACTCAGTCAGTCAGCTTTCTGACCCTCCTTGTCTTTCCTTCTTTCTATTTTCATTCCCATGGTTGTATTT---------TTATGATATGCTACAATCATAAATATTCCATTTGTGGGAAAATTCATCCTCCAGAATTATTACTAGGATGTTATCAAATCAAATTGGACAATAACTTGCT-----TTGAAATGAAAAGT-------TCATGGAATGAGGATGTTATGTAATTTGTTATATGAATTAACAGAACAAAA
s HiC_scaffold_1 131183478 2340 + 233722169 AAACCATATTGATG-TAACCCAGCACCATGACACACTTACCAAGAGCGCTGTC---GTGTGAACCAGGTCTTCTCAACCTGCATTCTCTCCTAACTGAACtttctt--agtaatatggttgcaACTCCCAGGCTGTGATGCTGAGTGATgaatgaaaatatgttttaaatatatatatatatatatatatttttttttctttttctgaaaataaagtcAACAGATTATTGCTTCAGTGATTCTTTTCCgtgatgaaaacaaaaattataggGATTATGGCTATTCaaggaaaagataaatgtttGTGTTGAACTGAAGT---------------------TAGGAAA----------------------------------ATCT----------------------GTGGTT--------TGACAGGTAgtgtgtgat-------------------------------------------atttttattagtttctcCTATACTCATGAAT-------------TGCAGGAATAGC----------AATGTAGCCATTACAATGTATAA-------CTGGAGATTTCTGGTGAATATAATGCCACCAACTAATATTGATAGCACCAACACCAAATCAATGTTTCcc-------aaatattatttatttggtattttaatctgtgttttgAATACTCAAATGGACAATTTTAGCTTCTTTATGAAATT--GAACATCATTTTAGAAAAGAATT-CATCACAAAATGATACACAACTAGGGATCAATAGGAAGAACGATCTTTATTCATCACTATgataaagataattaaaatgaattcattcaaatgataaatataattaataaaatgatgTATTCACAGTTGCTCTACATATTTGTGAAGTGTTTATTTCTACCCAAATATCCTTTCTAGACT-TCTTAATATAATTTTTGTAGTTCAGGACTATAAGGATGA--ATTTAGGAATTCAGAGATACcttttacttatattattttgatttttaaaaccctGTTCTAGGTCTGTTtgaagagtttttcttttttagtatacAAATAGTAGTGCCTAAAATAATACTAACAACTACAACAGACCCTACTACTGACAAGACCAGAATAGAAATATTAACTCCAGAATGATAATTTTTATCAGGACTAGGATTAGGACCACTTTCATCAGGACCACTTTCATCAGGACCAGGATCTGCTTCAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATATATCGTTCAACTAAGAAAAA-ATTACATCTAGTTCAGTAACTGTAGAATGTTGTattaaatttctttccatttattcctGAAGACATTCTTTTGTTATAC----AAAGTAT--ATCGTTGGGCTGGAGATAT--AACTCGGCAgtgca-----gcacttgcctagcaagtgtgaggtcttga------gttcaatttgcAATacgccaaaaaaacaaaaaa-----atccaaaagaaacaaacaccaaaccaaaacaaaataaaaaatcaaccaCCCCAAATATATCCTTATTTCAAAGGTCTTAG----TGATTTTTAATAAaagctacattttcattt---------------------------------------------------------------------------------------------------ttaaattctgccAA-------------------ATGCTACTAC--------CTTAG-TATGA----AAAGAAGGGCCAC---GGTAAAATGTGTCATGTTTGATTGATAAAAAATTCTGAAGTTAGCAGTATGCAGAACTGTCAG--GTAGGTACTATTCTCCCTTAACTTACTCTTATATCCTTGCTTTAGCAAACAGCATCTTTAACTATATGAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTCTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAGGTCTGTGATTTGACTGGGTGGGTATGGGTCAGTGACTGGAGTATTTGGATACCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTATCTCAGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATCTCCCCTACATCAAATAGTTTCCAGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTTTACAACTCGGTGAAACACTTCCCTTATCtcgtttgacttttttt-------ttgccatatacACAGAAACATTTGGCTAAGTCTTGTGAAATAATATTAAACTTAGGAGACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGGGTAAAAATAGATAACAAATTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCAT----TGTTGATATCATACAG---GTGTTCCAAAGTAACAGAACACAA

a score=51731
s chr3           144951737 4203 + 160039680 [encoded data, 4506 characters]
s HiC_scaffold_1 131233556 3893 + 233722169 [encoded data, 4506 characters]

a score=39600
s chr3           144951781 2408 + 160039680 GTGTGAATCTATTCTTCTCAAACTCCTTTCTTCCTCTCCTTAAC--TCCTTTCCATCAATATGCTTGAGACCCCTAGGTTGTGCCTCTGAATGATGGGCTAAAATGTATCTTTAACATACTTTGCTTTTTGTTCTCTGAAAA-AAAGTCAATAGTCTATAGCTTCAACAATTCTTTCTTAAGATGAATG-AAATGCACATAGGTAGAAGGG--GTTTCATGAGACAAGAGGTGTTTCAGTTATATTGAAATATAACCAGGTGGTATCTGATTTAAaaaacaaaacaaaacaaaacaaaacaaaacaaaacaGTATCTTCCTGggcccagaataaagacagttgctgccaaacatgacaagaggagtttgttttgtaggacccacaatttggaaggagagaacccattcccacaaattttcttctgatctccacattcacatgactgcacatacatacatgcacctatacCCCTTTATTAAACCATAACCCTTATTATG-ATAAAGATGAGTTGTGGGTTTTGAGTTAATT--ATGCCATTAACTTATATTGATAATACCAAGAGCTAGTTCCTTTTTTTTTTCCTGTAAATGTTGTTGATTTTCTCTTTTATATTTTATCCTAGGTACTTAATTAGA-GACTTGAATTTCTTCAGGCAATTTGAAGTATCATTTCAGAAATCTTCTACATCAGAAAA-AATACACAAATAGAGATCAAAATAAA--ACCAGTTTTATTTATCACTATGATAAG---------------ttaat-aaaattataaatat---taatattGGTAGCTTTTCACAG-----------------AATGGGTGTGCTT-----AAAGTAT--TTTTTAGACCCTCTTGAAGTTACTTTTG-AGTTCATGATGACATGGGATATGCTTTAAAAACTCAAAAATATCTTTT--TTAT-TCATGTTATCTTTCAAAATTTTGTTATAGCTGCTGATGAGGACCTTTTGTTCTTTAAGATACAAATTGTGGTACCTACAATAATACAAACTAGAACAAGAGCGCCCAAAACAGACAGCACAATAGTAGCAACACTAACTCC----TGATAA-----------ACTTGGA---------CTTTCATCAGGGTCAGGCTCTGCCTGAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTGACAAAAATGTTATGTGTGGGTTAGTTACTGCATCACACCATATTAAATTTCTTTCTAGTTGTTCTCACAAATACTA---AGTCATACA----------------------------TCAACAGTCTTATTCATTTTTCTGTAAAAGCTGAGTTCTGAAatttatttgtttatttatttatttatttTGGTGtttcgaggcagggttcaacgctatatcccagctgtcctggaactcactgtgtagaccaggctggcctcaaactca--gaaataagctgcctttgcctctgcctctgcctctgcctc---tgcctctgcctctgcctctgcct-----ctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgccaagtcctgggattaaaggcatgtgccactattgcccCCACTGAGTTCTGACTTTAAAAGACAGCTATGCAGGGAAAGTAAGACCTGTTTCAT------AACATCCTAAAATTCCTACTTGACTGAGTTGTCAGTCATAAGTGCTCTCCTCTAGCTGACCTATCTGTTCTTGCTTCATCC-----CATCTCTCACT-TAGGTCAAACCCAGAGGGGTCCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTATACATCAGGCAATGGACCAATTGGAACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATCCTCCAAGACTGGCTGAGTAGCCTCAGTCGTTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGCATTTAAAATTCTCT-ATTTAAATTGG-----ATGGAACTGTAAACTTTATAGAACTCAGTCAGTCAGCTTTCTGACCCTCCTTGTCTTTCCTTCTTTCTATTTTCATTCCCATGGTTGTATTT---------TTATGATATGCTACAATCATAAATATTCCATTTGTGGGAAAATTCATCCTCCAGAATTATTACTAGGATGTTATCAAATCAAATTGGACAATAACTTGCTTTG
s HiC_scaffold_1 131106886 2192 + 233722169 GTGTGAACCAGGTCTTCTCAACCTGCATTCT----CTCCTAAATGATCTTTCTCAGTAATATGGTTGCAACTCCCAGGCTGTGACACTTAGTGAtgaatgaaaatatgtttttaatatgtatttttttct-ttttctgaaaataaagtcAACAGATTATTGCTTCAGTGATTCTTTTCcatgatgaaaacaaaaatatatagggACTATGGCTATTCaaggaaaagataaatgtttGTGTTGAACTGAAGT---------------------TAGGAAA----------------------------------ATCT----------------------GTGGTT--------TGACAGGTAgtgtgtgat-------------------------------------------atttttattagtttctcCCATACTCATGAAT-------------TGCAGGAATAGC----------AATGTAGCCATTATAATGTATAA-------CTGGAGATTTCTGGTGAATATAATGTCACCAACTAACATTGATAGCACCAACACCAAATCAATGTTTCcc-------aaatattatttatttggtattttaatctgtgttttgAATACTGAAATGGACAATTTTAGCTTCTTTATGAAATT--GAACATCATTTTAGAAAAGAATT-CATCACAAAATGATACACAACTAGGGATCAATAGGAAGAACTATCTTTATTCATCACTATgataaagataattaaaatgaattaattaaaatgataaatataattaacaaaatgAAGTATTCACAGTTGCTCTATATATTTGTGAAGTGTTTATTTCTACCAAAATATCCTTTCTAGGCT-TCTTAATATAATTTTTGTAGTTCAGGACTTTAAGGATGA--ATTTAGGAATTCAGAGATACcttttacttatattattttgatttttaaaaccctGTTCTAGGTCTGTTtgaagagtttttcttttttaatatacaaATAGTAGTACCTAAAATAATACTAACAACTACAATAGTCCCTACTACTGACAAGACCAGAATAGAAATATTAACTCCAGAATGATAATTTTTATCAGGACTAGGATTAGAACCACTTTCATCAGGACCAGGATCTGCTACAGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATGTATCGTTCAACTAAGAAAAA-ATTACATCCAGTTCAGTAACTGTAGAATGTTGTattaaatttctttccatttattcttGAAGATATTCTTTAGTTATACAAAGTATACcgttgggctggggatataactcagcagtgcag--cacttgcctggaaagtgtgaggtcctgagttcaatttgcaat------------------------------------acaccaaaaacaaaaaaatccaaaacaaac------aaacaaacaaacaccaaaccaaacaaaataaaaaatcaaccaCCCCAAATATATCCTTATTTCAAAGGTCTTAG----TGATTTTTACTAAaagctacattttcattt---------------------------------------------------------------------------------------------------ttaaattctgccAA-------------------ATGCTACTAC--------CTTAG-TATGA----AAAGAAGGGTCAT---GGTAAAACGTGTCATGTTTGATTGATAAAAGTTTCTGAAGTTAGCAGTATGCTGAACTGTCAGGTAC---TATTCTCCCTTAAGTTACTCTTATACCCTTGCTTTAGCAAAGAGCATCTTTAACTACATGAATAAGACACATGACACTTTGTTCTTACCTTTTCCAACATCAAAATCCTTTCCTGGTGCTGTCCATGTTAGAGTGACCTCTTCTCCTTCAGGTGTGGCAGCCAAGTCTGTGATTTGACTGGGTGGGTATAGGTCAGCGACTGCATTATTTTGATATCCTGATACCACAAATGCACCTCCAGATGCTGTTCTGCTGAAATTCTCCAGAATTGTCTCAGTATTCTCATCAGCTTCAGGTCTTGGTGGGTTTCCTTCGATTTCCCCTACATCAAATAGTTTCTGGTTTAAAATGGGCACAACTGAACTGGTGTTTTTTCACAACATGGTGAAACACTTCCCTTATCtcgtttgacttttttttttgc------cataccCACAGAAACATTTGGCTAAGTCTTGTGACACAATATTACTCTTGGGAAACTTCTGATGGGAGACTTCTGTCATTAGTATCCTAAACAAGATGTTATAGAGTAAAAATAGATAACAAATTGCTGTG

a score=87656
s chr3           144952282 6039 + 160039680 [encoded data, 6408 characters]
s HiC_scaffold_1 131147650 5514 + 233722169 [encoded data, 6408 characters]

a score=92136
s chr3           144952282 6039 + 160039680 [encoded data, 6389 characters]
s HiC_scaffold_1 131072432 5538 + 233722169 [encoded data, 6389 characters]

a score=6997
s chr3           144952841 290 + 160039680 GAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACTGTTGAACTG----ACAAAAATGTTATGTG------------TGGGTTA-GTTACTGCATCACAC
s HiC_scaffold_1 130977632 307 + 233722169 GAGGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATTCTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAACAAACAGTTCAGGTGCATTAAAAGCACTGGGATACCTTATTGCACCACAC

a score=10041
s chr3           144952841 243 + 160039680 GAGGGGTGAACAGTGCCACTTGTGCGATGTTGGATGGTCCCGAACTCAAACTGCTTTTGTCGACACTTTCAATGGCAATGAATATGTACGTTGCATTTTCTTCTGTGATATTTTCTGGTTTAAAGGCAAAGGTTTCCTCGGAGTTGGCTTCTTTTGGTGTAAGGTTAGTTGTATCAACCCGAGGAGAGTTATTAAAATTGTCTCTCAGTTCAATGATGTTTTTGCTTGTTCTTATGATATACT
s HiC_scaffold_1 131287921 243 + 233722169 GAGGAATAAACAAAGACACTTGGGCCAAGTTGGATATTTCTGATTCCAGATTAGCCTTATCGACAGCCTTAATAGCAATGAAAAGATTGGTGCCATTTTCAAAGGCAATGTTTTCTGGTTCAAACACAAAGATTTCCTCAGAGTTGGCCTTCTTTGGGATGAGACCAGTTGTGTTCACTTGAACTGAAGCATTGAACTTGTCTCTGAGGTCAAGGACATTTGTACTCATTCGAATGATATACT

a score=14119
s chr3           144953605 400 + 160039680 ATAACATCCTAAAATTCCTACTTGACTGAGTTGTCAGTC-ATAAGTGCTCTCCTCTAGCTGACCTATCTGTTCTTGCTTCATCCCATCT--------CTCACTTAGGTCAAACCCAGAGGGGTCCTTGTTCTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTATACATCAGGCAATGGACCAATTGGAACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATCCTCCAAGACTGGCTGAGTAGCCTCAGTCGTTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGCATTTAAAATTCTCTATTTAAATTGGATGGAACTGTA
s HiC_scaffold_1 131016995 401 + 233722169 ATCAGATTATGAAATTAATACCTTGCTGCACTGTcaatttaaaagtgttttcctTT--------CATCTATCCTTACACCTTTACTTTTGCAAGGAATACTTTTCGCTTATAACCATAAAACACTTCACTCTTACCTTTCCCAATATCAAAATCATCTCCTGGTGCTGTCCATGTTAGGTGGATTTCATCCCCATGAAGTGTGGCATCAAGGTCTCTGATTTGGCTAGGTGGATACAGGTCaatgaaggggagaggtggaACTTGTGATACCACAAACACACCTCCAGATACTGTTCTGGTGAAACTCTCCGAGATTGGCTGAGTGTCTTGATTATTTTCAGGTTTCAGTGCATTCTCTTCAATTTTCCCTGCATTGAAAATTCCTGGTTTTTAATAGACACAAgagta

a score=5767
s chr3           144953726 243 + 160039680 CTTACCTCTTCCAACATCATAATCATCTCCTGGGGCCGTCCATGTTAGACTGATCTCTTCCCCATCGAGTGTGGCCTGGAGGTCTGTGATTCGATTTGGTGGGTATACATCAGGCAATGG--ACCAATTGGA---ACATTGGACATCACAAAGGCACCTCCAGATGCTGTCCTGCTGAAATCCTCCAA---GACTGGCTGAGTAGCCTCAGTCGTTTCGGGTCTGGGTGGGTTCCCTTGAATTTCTCCTGC
s HiC_scaffold_1 130981283 249 + 233722169 CTTACCTTTTCCTTTATCAAGGACATTGCCAGAGGCAGTCCATGAAAGTTGAATATGATCTCCTTGAAATTTAGCCTGAAGGTCTGTAATTTTACTGGGTGGGAACACAGGAGT--ATGGTTACCCTTAGGAGGCGCTCCTGACACAATGAATGACTCTCCCAAGCTTAGTCTGCTGAAGTCCTCCAGTtcaactttttctgcatcttctttgatttcaggtCTGGGCGGGTTCATTATAATTTTGCCTAC

a score=36915
s chr3           144954672 3652 + 160039680 ATGACCATTTCCTCTGTCAGTAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCACAGTAACAAATACTAGCTGA--TAGGTTTTCAGCA-----TCTATTGGTTGCTAGGTTTTGATTAGGAAAGAATTGTGTAATAATCTCACAATAGAAATGTTTGTAGTTACATTTTGAACTGTTTGTAGCCTCCACCATATGAAATCACAAAAAAAAAAAAAAAAAGGATTCACTGGGTTTCTGATACTGGGAGCAACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTCGCAGAATTTCTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCT--TGGTAAAAGCATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGGTTGGTGTGTGTTGTCACACATGCA-TGGCCTTAT---ATGCAT-----AGTCTGT-GGCTGTGCTTACAGTTTCACATTTATTTGAGTGTCTCTCTATCAGTTTCTGCCCAAATAATACATTATTGATTGGTGTTTCCTTGACTCACATTGGCATGTATATATTGGCATTCATATAACATGATAACCCACACTGATAATTGTATGTGTTTCATAAATAGTTTAACACTTTACCTCTCTCTGCCCT-----AAGCAG-------AGGTCATAAGACTTTTTCACCATTTCACTTACAATTGATTGATTGCAGTTCTCTACATTAATGTTCCTGTGTTA----TCTTCTGTTTAAATAAGTGAGGCCCTTCTTGTGACAAATGTATCTTTATATAAGTCTTAGTTATCATCCTTCCTCAGAGACAACCAAATTAACTTATTTTGCTTTATAAGCAGCAACTTTTGTTT-CTTTCCTTTCTTTGTTTTCTTTTCCTTTGGTACTCCCAATCACTTACTACCTCTGTAGTTCAACACAGAAAAAATACATTT--TACTCTAGGAATAAATATTTCG-GTATCTCAGAATTGTTGTAGG--GTAAGTTCGCTCTTACAACCA-TTAGCATATGGGGCACATGATAAGTTGAAATTGTATTTCTCATTCTACTCAGGAG------AGAGAACAATGT-----TCTTGCATTAGCCACATCTGTGTTCCTTTAAAAGTCTGGGGATTGTCAGTCATGCAGATTTCCCAGACTACCTAGGGAAACACCTGAGCAGT--------------CCTTCAAGTGACTTTTCTGTACACAGAAGCATGCAGTGCTGGCCTCAGCTATCAGCCATCTATTTCTTTTTCTTTTTTTCAGTAAAGGAATTTTAAAAT-TAGTTTATTCTCC----------ATGATCTAATTGCTCATCTGGTAATCTAGTAAAATACCAAGAAATGAAGCAAGGAGCATGAAGTTACATGCA---------------CTGTAGAAGGGCCTGGAAA--------------------------------------ATGGGGAGAGGTAGTTGGGG--AATTATTGTTGCAATGAGAGAAA-----ATGTGGAATTTACTCCAAAAGCAGTCAA-ATATAGCCAAAGATAAGTTTGTAGAAT-----------------------GGAATGAACTGACATTGCAAAATGCACGGATAGGCATC--------TTTTCTCATTTGTGTGTGGACCAGAT-TGGTTATTTTATTGCTGACTTCCACACAAGGTTC------CACTCACAGGAGAACTCAGAGTGCAGGGAAAGGGTTTCTGGCCCACCTCCCTACAGA------------GTAA--CCATTGCAGTTCCTAGCTTCCTGCCAGCCAGACCCAGCATCTGACCCTCCAGTGTCCAATC--CCCTCTCTGTGCTATTTCTAGCTTCTCCTGGGTCCCTGCTCCCAGGACTCTATCTATGCTTTGTTCTAGCTGTGGGGAATCACCCTTGCTTGCTACGTTCCCTTCAGCTATCAGGGTCCCAGGCTCTGGTGCCCTCTCCCACCCAAGGGATATTCCTTTGATAGCACTTTTTTGGTGATGCTCCCCTAAGAAGCATGAACTTAGAAGGAAGGCTTGTGTTCTCCATCTTCTGAATGGGCCTGTCTTAGCTGGAGACAGCCAGTGCCTGTCAAGATTACAGACATCATTTTGACAGTAGCTGACATATACAGACAGCTTACCATGTGGAAGATGCTTGCTATGCACTTACGTGG-----TACCCTATTGCATTTCCTGCTGGTCTTTCTATTCCTTCCTTttttttttttttttaaagatttatttatttattatatgtaaatacactgtagctgtcttcagacactccagaagagggagtcagatcttgttacagatggttgtgagccaccacgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctcttacacactgagccatctcaccagcccTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTGTTCCCACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATCAGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATGGGAGTGTAACCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGTGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCA------------AACACCCACCTAAAATTGTCAATGAAACATGCAGCAAGCATTTAGTGTCCAACGACATGGttgtttgtttgtttgtttgtt-tTTCATTATGTGATTTTAAAAATAAAGCATAGA-----AGAAGAAAAAAAACAAAAACAAAATTGGGTTGAGTGTTCTTAGAAAGGTCTTGATTCCTCAGGTACTGAAGCTGAGACAGACTGGGATCCCAGAGAGTGTTATGCATGATATTTGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTGTGGCCTCTGTGTCATATATTCCATGACTCTGGCAGGCGGAATTGGAAAAGATGTCATGCCAAGTCAACAGGATTCTCCACGTTTATTCCTCC--------CTGTTCTCAGATGCCTTTTGTTTTCTATCAACC----CAAGGCTTCTCTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATA-CATTGTTCTTTCATTTTGAAGATGGTAAAGTTATT-GTACTCACATTTATGATAT------GCTTAGAGCCTCTTTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGAATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCAAGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTGTTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAACCAACAAAAGAAAAAAAAACCTTAATTACTACATAAGACAAAATTTTATTCTATTTTCT-----AGATAATTCCTCATATTTGATCTGAAAATAGTCTT
s HiC_scaffold_1 131109062 3258 + 233722169 ATAACAAATTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCGTCCAGGTATTCCAAAGTAACAGAACACAAATGGCCTGAGTACTCACTAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAG--GAAGTTGTGAAATGAA------GCCCCCTTTGTCATACCAAATTACAAATATTACTCCAGCCAGCAC-----AGGTTTCAGGTAGCATGTGGCACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTCTCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCTAgttgtagaaataaaaaaaaacaaatt--attactgaaaataagacaataaatagATGCGTTTTCTGAGACAGGCATTGGTCTTAGTAAGTGTATCATCCAGTCTGGAGGAAGTATTTTGGGAACAACATT--CTGGAGACTATTTCTGTAATGTTCTGATAAAACAATATATTGATG---------CCCTTAagttatttttgtatctatatacTTCTACCTATataacacatatacacacactt----ttGTTTCTGCATTGATAATAGTT--ACATATCACATCTTTCTATCCTTTATCAATCTGTCCTTTCAGTTGGTA--ACCCCTCTACCATTTCTCGGCCAGTGGTTTGCTTACA--TTACAAAATTAATCATGCTGTCTAAAAGGTCTTTACTACAAAAAA-----CCCCATCCTTTGGAGGATTTACTTT--TTTGGGTCCT----------------------CAAGTAAAAGTACTTGTTTTCTCTTAT--TCAGCAATTCCTTTTTACTTTCCTGCTCTTATTATCC-------------------TCATGCATTAACCTTTTAGCCTGACAGAGCAAAACACCATTTACTACT----GAAGGAACATTTGGAAGAGCTCAGGACTACCGTGAACTGTGTGTCTAGTGTTAGAATCACCTATTAAAT---TTCCAAGATTATTTCCAAGCACATTTACCATCTACGTCAGAGGATCTTAAACAAGCAAGGTACAGCACTTAGAGCAGCACTATCTGTATCTCTTAGAA---CTGGAGAGTTTCAAACATGCTAATTTCTCGCACTATGTATGGAAGAACCTCAGAATTATATTTCATCAAAGCCTCCAGATATTTCTTTTACACACTAAAACA-GTAGTGGTGAACATATTGAGT-Gtgggttatttgtttttctttt--------aggacaTTTTAATGTATGGcttgttttttctaaacaaaaatgttttcagtgttttccttctaa---aataaataagtgagttttggaTTGCAGTTCTGGGAATTATCTGTAAAATGTTCATCATCCCTGTACTAAAgtataaaaatgcctactttaaGCCATTACTAATCACCAAAATCTACTGTAGGGAAAGATATTCCAAATTAAGTAATTTCACAGTTAGACAAGTATTCATATGAAAAAtgccaagaaataaaacaacacacag---GAGGTAAGTTT-TAGTATTGTGTAACAGTTTTTTCAGACAGGGAAGAGACAGTTGGGGAAAAAGGCCTTAAGGTTCATCAAAGAACAAGTTGTCACCTGCAGGTGA---AGATATGGTTAAAACATAACTGAATCAATTGCATTGTTCACTGAATTTTAACAGAAG-TTTCAGACTCTGGAGCAAGGTCCACTCACTCAC------ACAGATCTGGAAGACAGGTAAGTCCAGCACTGCTCCTTGTTTCCTG-------------GTATCTAATGCCCCTGTGATGAGCCCTCCTCTTTTGTGGCAGTTCTAGCTGTCGCTAGACCTCAGATCTCTGGCCTGTGTTtgta-tttgttcctgattttagaaattaCTTCTGCGTGT----CTCCCTTTCCCTGCCAGAGTTCCAGGTT----TGGCCTCCCAGCCCCA-------------------------TCTGGT------------------------------------------------------------------------------------------------------------------------------------------------CATGTGGAACATACTTGCTAAGTATGTTTTTGAGATTTTACCCAAAAAAATTTCCTACTGGTCATTGTATTCCTCCATTATCT---------------------------------------------------------------------------GTCTGAATTTGTTG-----------------------AGTTCCTGTGCT----ACTCTGCAACATTGCAACAG------------------------------------------------------------------------------------------------------GGATCCAAAACATGCCCTGAATTATAAA-ATATGAGTTGATTCATAAATGTGTGTGAATGACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGCTTGCTTTGGCTTGAAGGTTATAAATCCATGTGAAATGGATTAAATCCACCTGAAATGTTCAATGAAA-AT---ATAAGTATTCACAGTCAAATTATA-----------------ACCTGTGATCTGATTATGCAATTCT-AATATATATCATAGATACTTGGAGAAGAATAAACAGATGTTGA--TGGATTT-gtgattttgtaaaattttc-----------------aacTGAGACTGTTTAGGC------AGTGCACTCCAACTAGTGACTGCACTGTGTAACATCTGAACTCGAAAAGTATATTTTTGGAAGTTTGTCTTGATTTTGGTCTTATACTTTGACTTC-----------------------------------AAGAAAAATCTGCACATCAAGTAGCCCAGACTCTT----TCCATACCTCCTCACAGAATTATTTTTtgattac-tttgttttctttcctctggtacatgaattttttctcattttcgaA--------------AGAATTACACA-ATATGGAGAGTACATAGTATTTTGTATTCATTTGACATTTTGTAAGATCATTAGCATTTGCAATTATGACATTAAACAGTTTTCAACTT-----TGAAAATGC-----AGAGCAAGTCTATAAGGTGATTACTTACTCACCTGTGCATCTCCTGGTATGCTGAGAGAGGCCATTTGGGAATCAGTGTCCTGAGTGAAATTTTCTGTCAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGACTGTGTGGT--AGGTGACAAGAAAGAAAGTGTCCTTTCTCACAGTGCTGTCAACTGTCACAGTGTCGTTTATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatat--atttaaaaatgaatgaatacagaTAAGACC--AATTATATGCTAATgaagtttattattcttttttcttttaatgttaacTCTCAATTTATGTTCTGAAAACAAGCTT

a score=16624
s chr3           144954672 1336 + 160039680 ATGACCATTTCCTCTGTCAGTAGCTGAAAGGTAGATACATT-TTGGTGATAGTCAAAGGATGTTCCACAGTAACA-AATACTAGCTGATAGGTTTTCAGCATCTATTGG-----------TTGCTAGGTTTTGATTAGGAAAGAATTGTGTAATAATC-----TCACAATAGAAATGTTTGTAGTTACATTTTGAACTGTTTGTAG------CCTCCACCATATGAAATCACAAAAAAAAAAAAAAAAAGGATTCACTGGGTTTCTGATACTGGGAGCAACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTCGCAGAATTTCTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAGCATAAAGAAAGGAATTACATCATTGTAA--CAGATGAGAGGTTGGTGTGTGTTGTCACACATGCA-TGGCCTTAT---ATGCAT-----AGTCTGT-GGCTGTGCTTACAGTTTCACATTTATTTGAGTGTCTCTCTATCAGTTTCTGCCCAAATAATACATTATTGATTGGTGTTTCCTTGACTCACATTGGCATGTATATATTGGCATTCATATAACATGATAACCCACACTGATAATTGTATGTGTTTCATAAATAGTTTAACACTTTACCTCTCTCTGCCCT-----AAGCAG------------AGGTCATAAGACTTTTTCACCATTTCACTTACAATTGATTGATTGCAGTTCTCTACATTAATGTTCCTGTGTTA----TCTTCTGTTTAAATAAGTGAGGCCCTTCTTGTGACAAATGTATCTTTATATAAGTCTTAGTTATCATCCTTCCTCAGAGACAACCAAATTAACTTATTTTGCTTTATAAGCAGCAACTTTTGTTT-CTTTCCTTTCTTTGTTTTCTTTTCCTTTGGTACTCCCAATCACTTACTACCTCTGTAGTTCAACACAGAAAAAATACATTT--TACTCTAGGAATAAATATTTCG-GTATCTCAGAATTGTTGTAGGGTAAGTTCGCTCTTACAACCATTAGCATAT-------GGGGCACATGATAAGTTGAAATTGTATTTCTCATTCTA-----------CTCAGGAGAGAGA-ACAATGTTCTTGCATTAGCCACATCTGTGTTCCTTTAAAAGTCTGGGGATTGTCAGTCATGCAGATTTCCCAGACTACCTAGGGAAACACCTGAGCAGT--------------CCTTCAAGTGACTTTTCTGTACACAGAAGCATGCAGTGCTGGCCTCAGCTATCAGCCATCTATTTCTTTTTCTTTTTTTCAGTAAAGGAATTTTAA-----AATTAGTTTATTCT
s HiC_scaffold_1 131185735 1323 + 233722169 ATAACAAATTGCTGTGTCCTGAGCTGAAAGTTGGGTATATCATTGTTGATATCATACAGGTGTTCCAAAGTAACAGAACACAAGTGGCCAA--TCTGAGTACTCACAAGGGCCTGACTTCTTTCCAAAGCTGAATTTGGAGGCAATTACCTGAGTATCCCAGTTCAAAAACAGGACATCTGTA--------TTGAGTTGTGAAAGGAAGCCCCCTCTGTCATACCAAATTGCAAATGTTACTCCAGCCAGCAC-----AGGTTTCAAGTAGCAAGCGGCACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaacaaatt--attactgaaaataagacaataaacaGATGCATTTTCTGAGACAGGCATTGGTCTTAGTAAGTGTATCATCCAGTCTGGAGGAAGTATTTTGGGAACAACATT--CTGGAGACTATTTCTGTAATGTTCTGTTAAAACAATATATTGATG---------CCCTTAagttatttttgtatctatatacTTCTACCTATataacacatatacacacactt----ttGTTTCTGCATTTATAATAGTT--ACATATCacatctttctgtcctttatcaaTCTGTCCTTTATCAACAGTTGATA--ACTCCTCTACCATTTCTCAGCCAGTGGTTTGCTTACA--TTACAAAATTAATCATGCTGTCTAAAAGGTCTTTACTACAAAAAA-----CCCCATCCTTTGGAGGATTTACCTT--TTTGAGTCCT----------------------CAAGTAAAAGTACTTGTTTTCTCTTAT--TCAGCAATTCCTTTTTACTTTCCTGCTCTTATTATCC-------------------TCATGCATTAACCTTTTAGCCTGACAGAGCAAAACACCATTTACTACT----GAAGGAACATTTGGAAGAACTCAGGACTACCATG----AACTTTGTGTCT---AGCATTAGAATCTCCTATTAAATTTCCAAGATTATTTCCAACCACATTTACCATTCTGTGTCAGACGATCTTAAACAAGCGAGGTACAGCACTTAGGGCACCAGTATCAGTATCTCTTAGAA---CTGGAGAGTTTCAAACATGCTAATTTCTCACACTATGTATGGAAAAACCTCAGAATTATATTTCACCAAAGCCTCCAGATATTTCTTTTACATACTaaaaca-gtggtggtgaacatatTGAAT-Gtgggttatttgtttttctttt--------aggacaTTTTAATGTGTGActtgttttttct

a score=11015
s chr3           144954823 309 + 160039680 TAGAAATGTTTGTAGTTACATTT-TGAACTGTTTGTAGCCTCCACCATATGAAATCACAAAAAAAAAAAAAAAAAGGATTCACTGGGTTTCTGATACTGGGAGCAACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTCGCAGAATTTCTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAGCATAAAGAAAGGAATTA
s HiC_scaffold_1 131025022 308 + 233722169 TAGGgataattttagttttagtaATAAACCTTTTAAAGCATTAATCATATCAGCTCACAAATATTATTCAAGACAACACTC--TGAATTTCTGACGTCATGAATTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaaggaagaaatta

a score=5491
s chr3           144954922 208 + 160039680 GAGCAACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGA--TGGGTGGCGTAAACTCCTCCTCGCAGAATTTCTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTAAAAGCATAAAGAAAGGAAT
s HiC_scaffold_1 131292088 208 + 233722169 GAATTACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTT--CCCTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCTGGccagggaaatgaaggaaataat

a score=6399
s chr3           144954924 187 + 160039680 GCAACTCACCATCTACTACCCAGCCTGGTATGTATGCAGCTCTGCTTGATGGGTGGCGTAAACTCCTCCTCGCAGAATTTCTTCCTCCATCTGCACGGACTTTTAAGCTATACCTGCCATTCACTGAATAAGCTGTGAAGAACCTGGAGTAGACCCCATCATCCTTGAAAGCATCAGCCCCTTGGTA
s HiC_scaffold_1 130982021 184 + 233722169 GCTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGT---TGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACA

a score=33817
s chr3           144956976 1348 + 160039680 tcttacacactgagccatctcaccagcccTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTGTTCC----CACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATCAGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATGGGAGTGTAACCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGTGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATGAAACATGCAGCAAGCATTTAGTGTCCAACGACATGGttgtttgtttgtttgtttgtt-tTTCATTATGTGATTTTAAAAATAAAGCATAGA-----AGAAGAAAAAAAACAAAAACAAAATTGGGTTGAGTGTTCTTAGAAAGGTCTTGATTCCTCAGGTACTGAAGCTGAGACAGACTGGGATCCCAGAGAGTGTTATGCATGATATTTGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTGTGGCCTCTGTGTCATATATTCCATGACTCTGGCAGGCGGAATTGGAAAAGATGTCATGCCAAGTCAACAGGATTCTCCACGTTTATTCCTCCC--------TGTTCTCAGATGCCTTTTGTTTTCTATCA------ACCCAAGGCTTCTCTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATA-CATTGTTCTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATATGCTTAGAGCCTCT----TTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGAATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCAAGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTGTTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTA--AAACAAACAACCAACAAAAGAAAAAAAAACCTTAATTACTACATAAGACAAAATTTTATTCTATTTTCTA--------GATAATTCCTCATATTTGATCTGAAAATAGTCTT
s HiC_scaffold_1 131238193 1269 + 233722169 TTTTACCTGATAAAATGTCCTACTGGTCCTTG-TATTCCTCCATTATCTGTCTGAATTCGTTGAGTTCCTGTGCTATTCTGCAACACTGCAACAGGGACCCAAAACATACCCTGAACTATAAA-ATATGGGTTGATTCATAAAAGTGTGTAAATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTCGGGAAGGTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAA-ATATA---AGTATTCATAGTCAAATTATAT-----------------CCTGTGATCTGATTATGCAATTCTAATA-TACACCATAGATACTTGGAGAAGAATAAACAGATGTTGA---TGGTTTTGCGATTTTGTAAAGTTTCCAA---CTGAGACAGTTAAGCAGTGC---------ACCCCAACTAGTGAC------------TGCATT--GTAACATCTgaactcaaaaaatatattttca-aagtttGTCTTGGTTTTGGTCTTTTAGTTTGACTTCAA----------------------------------GGAAAATCTG-CACATCAAGTAGCCTAGACTCTT----TCTATACCTCTTCACAGAATTATTCTTTGAttacctt-gttttctttcctctggtacatgagatttttctcattttcattatgGTTCTTA-CTTACAGAATT-CACAA-TATGGAAAGTACATAGTATTTTGTATTCATTCGACATTTTGTAAAATCACTGATATTTACAATTATGACAt---taaacattttcaactttcaaaa------tgCAGAGCAAGTCTATA----AGGTGATTACTCACCTTTGCATCTCCTGGTATGCTGAGATAGGCCATTCGGGAAACAGTGTCCTGAGTGAAATTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaatatatttaaaaaagaatgaatacagaTAAGACCA---------ATTATATGctaatgaattttattattctttttcgtTTTAATGATAATTCTCAATTTATGTTCTGAAAGCAAGCTT

a score=33759
s chr3           144956976 1348 + 160039680 tcttacacactgagccatctcaccagcccTTTCTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTGTTCC----CACTGCCCCAGGAAC-----ACATGACACATTTGGAACTATAAACATATCAGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATGGGAGTGTAACCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGTGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATGAAA-CATGCAGCAAGCATTTAGTGTCCAACGACATGGttgtttgtttgtttgtttgtt-tTTCATTATGTGATTTTAAAAATAAAGCATAGA-----AGAAGAAAAAAAACAAAAACAAAATTGGGTTGAGTGTTCTTAGAAAGGTCTTGATTCCTCAGGTACTGAAGCTGAGACAGACTGGG------ATCCCAGAGAGTGTTATGCATGATATTTGCATTTTGTGATATCTCAATTGGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTGTGGCCTCTGTGTCATATATTCCATGACTCTGGCAGGCGGAATTGGAAAAGATGTCATGCCAAGTCAACAGGATTCTCCACGTTTATTCCTCCC--------TGTTCTCAGATGCCTTTTGTTTTCTATCA------ACCCAAGGCTTCTCTTCCTTTTACCAGGCATCATAGCTCTCAGGATCACACAGGTAAGGGAAGTACATA-CATTGTTCTTTCATTTTGAAGATGGTAAAGTTATTG-TACTCACATTTATGATATGCTTAGAGCCTCT----TTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGAATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCAAGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTGTTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAACCAACAAAAGAAAAAAAAACCTTAATTACTACATAAGACAAAATTTTATTCTATTTTCTA--------GATAATTCCTCATATTTGATCTGAAAATAGTCTT
s HiC_scaffold_1 131187735 1278 + 233722169 TTTTACCTGATAAAATGTCCTACTGGTCCTTG-TATTCCTCCATTATCTGTCTGAATTCGTTGAGTTCCTGTGCTATTCTGCAACACTGCAACAgggaccgaaaaaaaaaaaatccctgaactATAAA-ATATGGGTTGACTCATAAAAGTGTGTAAATTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAAACAT-----AAGTATTCATAGTCAAATTATAT-----------------CCTGTAATCTGATTATGCAATTCTAATA-CACACCGTAGATACTTGGAGAAGAATAAACAGATGTTGA---TGGTTTTGCGATTTTGTAAAGTTTCCAA-----------------CTGAGACAGTTTAAGCAGTGCACCCCAACTAGTGAC------------TGCATTGTGTAACATCTgaactcaaaaaatatattttca-aagtttGTCTTGGTTTTGGTCTTTTACTTTGACTTCAA----------------------------------GGAAAATCTG-CACATTAAGTAGCCTAGACTCTT----TCTATACCTCTTCACAGAATTATTCTGTGAttacctt-gttttctttcctctggtacatgagatttttctcattttcattatgGTTCTTA-CTTACAGAATTACACAA-TATGGAAAGTACATAGTATTTTGTATTCACTCAACATGTTGTAAAATCATTGATATTTACAATTATGACAT---TAAACACTTTCAACTTTCAAAA------TGCAGAGCAAGTCTACA----AGGTGATTACTTACCTGTGCATCTCCTGGTATGCTGAGATAGGCCATTCGCGAATCAGTGTCCTGAGTGAAATTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGTTTAaaggt--atttaaaaatgaatgaatacagaTAAGACC-----AATTATATGctaatgaattttattattctttttccttttaatgataACTCTCAATTTATGTTCTAAAAACAAGCTT

a score=20521
s chr3           144957008 490 + 160039680 CTATTCCTTCCTAATCTGTGTTAACCCTTCGGGTGGCCATCTTG----TTCCCACTGCCCCAGGAACACATGACACATTTGGAACTATAAACATATCAGCTTATCCAGAAAAGTCTGTGGGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATGGGAGTGTAACCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGTGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAATTGTCAATGAAACATGCAGCAAGCATTTAGTGTCCAACGACATGGttgtttgtttgtttgtttgtttTTCATTATGTGATTTTAAAAATAAAGCA
s HiC_scaffold_1 131026301 474 + 233722169 CTATTTGTCCATAATCTGCCTCAATTTTTTTGATGCCTGTCTCTCTGCTTCATATTGTCTCTGGGACCTATAACATATCCCaagttatgaaaatataaatttacttATAAAACTCTGTGAATTACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTGCTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCTAAAATGTGCAGT----------GCAAACATTAAATATCCATTGTCAAATTAATTTCTGTG---------TTCTCATtatac-atttctaaaataaatca

a score=10825
s chr3           144957123 1088 + 160039680 GGTTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATGGGAGTGTAACCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGTCCGTGTTTACCTTAGCATTTACAGTGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATCGTTAGTATCTCTGAGTTTTCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCT----AAAATTGTCAATGAAACATGCAGCAAGCATTTAGTGTCCAACGACATGGttgtttgtttgtttgtttgtttTTCATTATGTGATTTTAAAAATAAAGCATAGAAGAAGAAAAAAAACAAAAACAAAATTGGGTTG--AGTGTTCTTAGAAAGGTCTTGATTCCTCAGGTACT---GAAGCTGAGACAGACTGGGATCCCAGAGAGTGT------TATGCATGATATTTGCATTTTGTGATATCTCAATT--GGAAAGTAATGTTTTGATAAGTCTGCCTTTGCTTTGCCCTTATTCTGTGGCCTCTGTGTCATATATTCCATGACTCTGGCAGGCGGAATTGGAAAAGA-------TGTCATGCCAAG----TCAACAGGATTCTCCACGTTTATTCCTCCCTGTTCTCAGATGCCTTT-TGTTTTCTATCAACCCAAGGC----TTCTCTTCCTTTTACCAGGCATCATAGC--TCTCAG-GATCACACAGGTAAGGGAAGTACATACATTGTTCTTTCATTTTGAAGATGGTAAAGTTATTGTACTCACATTTATGATATGCTTAGAGCC----------------TCTTTGCAAAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGAATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCT--TGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCAAGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTGTTCAGTATGGCACCCTTACTTTCAAGCTGT
s HiC_scaffold_1 131293443 1050 + 233722169 GGTTACCTGCTCCATTATCCAGTAGTTCCAAGGTGACTGTTTTCCCATTTGCCGATTCAATCACAGCTGTGACCTGGGCCCCGAGAATTGGTGAAGCTCCTTGGTGAATATTTGCATAAACTATCATAGGACTGGGGAATTTGCCTGTGTCCTTGTTCATTTTGGAGGTCACTGTAATCGGAGGCAGGGTAGCACTTGATGCACGTGAGGTGACTGTCAGGGTGAGAGTTTGTGAGCTC------GCTTGCAGACTGTATTTCCAAATGCCAACCTGACCAAAATAGATGCAGACATTTCCAATAAATAACT--------ATGACAGAA--------------GCTTGCCTTC-----------------AGTGGCACGTATAGGAAAAGGCTGTCT---GACACAAGTGTGTTGCAAGCATATCTAAGACG---TGGGCATCACCGGCACTTTGTCAGCCAAGGCA------CATTTCAGAGGGTTTGCACAGCCTACATGGTTCTCCTCGTTGGGAAGATCCCAATCAGAGAAAATAAGGTCTGA--AAGCTGGGCCCTCATTTATCATTGGCCTG-GTTTCCTAAGACATGGATT---------------GCTGAGGTAGAAGGAACATTTTTTGTGCTGTCAAAGCTTCCAGCGTTGTTTTGCATCTTCA--ACACTATGTAATTGGAAGATTCTGTCTTTAGTATCTGCACAAAACATCATTAGTTTCCTTTCTCTTGACATGCTGGCAAACTGAGTGATTTTCCACTGCATGGAGATTTTCCCATCATTTTTTTATT-----GATTCAATACTTACTCTCCTCTTAGCAAC--TATTCTAAAAGCCACagttattttgttttaccttGTCAGGgta---tgagaaggaaaaagaaaatc---ctgaCTTCGTACCTTAGCGATGTCTGGGACCTGGAGGTAGGCCATTTTGCTGGCTGCATCCACTACGAAACCATTCTGCCTTGTTCCACTGGGATCCCAGAGAAAGAT--TTGGGGCTGCTGATTTGTCCATGTGATAAGGAACAATGTGTCCTTTCCTACTGTGTCATCCACAATCACTGTGCCATTCATCCACTGGCGGTTCTGGAGGGTTGCTCCTCTACTCTCCAGCTGT

a score=6671
s chr3           144957125 278 + 160039680 TTACCTGCACCGTTGTCCAGAAGGACTAGCTCTTCTGTCTTCCCACTGTTAGATTCTATGGTGGCTGTCACTCGGGCTCCAATGATGGGAGTGTAACCTTGTAGAACTTCAGCATACACAATCATTGGGCTGGGGAAAGTGTTAGTGT-CCGTGTTT------ACCTTAGCATTTACAGTGATTGGTGGCACAGAAGAATTTGCTGCCCGAGAGGTTACTGTAATCGTTAGTATCTCTGAGTTT---TCTTTGGCTTCCAGGTTGTAAGTCCAAACACCCACCTAAAA
s HiC_scaffold_1 130982926 281 + 233722169 TTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGG-------TAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaa

a score=13964
s chr3           144957847 641 + 160039680 AGGATCACACAGGTAAGGGAAGTACATACATTGTTCTTTCAT---TTTGAAGATGGTAAAGTTATTG-TACTCA--CATTTATGA---TATGCTT----------AGAGCCTCTTTGCA------AAAATACCGTTAGGGGGAAATCCAAACACTAGCTAGTGGCTTACCTGAGCTGTTCCTGGAATACTGAGATAGGCCATTTTGGAAGCAGAGTCCATTGTGAAATTGGTGGTTTGTGTTCCTTTGGGATCCCTGAGATAAATGGCAGGGGCTTGTTTGCTCCAGGTGACAAGAAAGAATGTGTCCCTTCCCAAGGTGCTGTCAATTACAACAGTGTCATTCAGCCAGAGGCTATTGTTCAGTATGGCACCCTTACTTTCAAGCTGTATAAATGTAAAACAAACAACCAACAAAAGAAAAAAAAACCTTAATTACTACATAAGACAA-------AATTTTATTCTATTTTCTAGATAATTCCTCAT-ATTTGATCTGAAAATAGTCTTACCTTTGATTTCTCCCCACTCCCTCCCTTATACCCCTTCCCTCAGAATAGATTTGCCATCTTTCTGAA---------GGATTCTTGGCTTGTGACAGTTGCAAGATTGGTAATGCAGACTCTGAAGACAGGGTAGAGTAGAAGAGGAGATCTAAAGAGGAAACATCAGtgtag
s HiC_scaffold_1 131028981 605 + 233722169 aggataatacataaatgaaaagagCATTC--TATTTTATCACAGCTTTGAGCATGGTGCAGTTCTTGGTACTCAGGCAtctaaaaaattatgtttttgacattaaacaatttatttttatgttctgaaat----tttaaaagaaatctagaaGATGACT----GCTTACCTGTGCTGTTCCTGGAATACTGAGATAGGCCATTCTGGAAGCAGTGTCTTCTGTGAAACTTCCTACCGGTTTTCCACTGGGAGCCCAGAGAGAAACACTGGGAGGCTGTTTTTCCCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTATCACAGTGCCATTCATCCAGGGATCATTGTTCAGGGTTAACCCCTTACTTTCAAGCtgtttaaacacattttaaaaa----------------------ttaatgactgCAGAAGGAAAtcatttcactctttttttcttttaaagattgtTCTCAATAATCTGGCCTGAGAGCAAGCATGCATGTGG-----------------CATAAGACCC------------TAGGGCTGTGATCTCTCTGAAAATTGATTGAGACTTGAGACTTGTCACAGT-------GTAGAAATGTGGGGCCTAAATAAAGATCagtgtaata----------aaaaagaaagcattagaaTAG

a score=10980
s chr3           144960559 516 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAACACCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATG---AATATGCTCCATTGTTTTGTAGAACAACAGTTCTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAAGTAAAAATTTCCATATG---GGTTAAATTAAAT---TTTCAGAAAGCTGTTAAGGTCATTTCTGAGATGTTAGGTTAATTTAATATACCATAACTGTGAA-GCAAACCCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGTACTTCATCTGGTT--GTAATTATGAAAGGCACTA-GATTCTGTATATTTAAGTTCACAGATTGTTGTATAGCCCTTTAGGGGAATTATCAACTCTTATTCACA--------TTATGTAGATTTTTGTCAGA
s HiC_scaffold_1 131115922 519 + 233722169 TTTTCGTGGTTAAGGTAAATGCAAACACAAACTTCCCTCTGTTGG---AGCTCTCACCTAAATGGACTTCTGACTGAGACCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCA--GAGTCCATTGTTCTCAGCGTTATCTGAAGCACAAAAGTGATTCCCTCCTAAAATGTAAATGCACAATGAG----gttaaattctaaaaaaataagTGCTCACACATTTTAGTGATTATAATGGGAAAAGTTTAATGAAAGACATAGTTTCTACATGTACTATTAAAACAGACCAATGTCAGATAGCTG-TAAGATTAATTCTGAAAt-----gctaatttaaaataatgtaaccAGGAAGGAAAAAGATACCATCATGCCTTAGCATCA-AATGTCAACTAGATTAAATAC-ACAAATGATCAGATAATGAAGAATATGGTTACAAATCTGTGTATTTAAGTTCA-GGATTTTTACACAGTACTTTTGGAGAATTGTTCACTTTATTTAAGATACAGTTCTAATGAAGTTTttgctcaga

a score=13249
s chr3           144960559 503 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAACACCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGTTCTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAAGTAAAAATTTCCATATG---GGTTAAATTAAAT---TTTCAGAAAGCTGTTAAGGTCATTTCTGAGATGTTAGGTTAATTTAATATACCATAACTGTGAAGCAAACCCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGTACTTCATCTGGTTGTAATTATGAAAGGCACTAG-----ATTCTGTATATTTAAGTTCACAGATTGTTGTATAGCCCTTTAGGGGAATTATCAACTCTTATTCACATTATGTA
s HiC_scaffold_1 131242198 489 + 233722169 TTTTCGTGTCTATGGTAAATGCAAACACAAA---CCTACCGCTGTGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCGTTATCTGAAGCATAATAGTGATTTCCTCCTAAAATGTAAAAGCGCAAGCAAGgttaatttctagaaaataagTGCTTAC--ACATTTAGTGATTAATAAGGCAAAAGTGTAATGAAAGTCACAGTTTCCACATGTACTATTAAAGCAGACCAGTGTCAGATAGCTG-TAAGATTAATTCTGAAAT-----gctaatttaaaataagataaccTGGAAGGATAAGATACCATCATATCTCAGCATCA-AATGTCAGCTAGATTAAATACATCAAACGATCA-GACAATGAAAGTATATGGTTACAATTCTGAGTATTTAAGTTCCCAG-TTTTTACACAGTAGTGTAGAGAA-----------TTGTTCACTTTATTTA

a score=13173
s chr3           144960559 503 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAACACCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGTTCTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAAGTAAAAATTTCCATATGG---GTTAAATTAAAT---TTTCAGAAAGCTGTTAAGGTCATTTCTGAGATGTTAGGTTAATTTAATATACCATAACTGTGAAGCAAACCCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGTACTTCATCTGGTTGTAATTATGAAAGGCACTAGATTCTGTATATTTAAGTTCACAGATTGTTGTATAGCCCTTTAGGGGAATTATCAACTCTTATTCACATTATGTA
s HiC_scaffold_1 131078522 481 + 233722169 TTTTTGTGGTTATGGTAAATGCAAACACAACTCCCCCGCTGTTGG---AGCTCTCACCTGAATGGACTTCTGACTGAGACCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTGAGCCTTATCTGAAGCAGAAAATTCATTTCCTCCTAAAATGTAAATGTGCAAGTAAGGATAATTTCTAGAAAATAAGTGCTTAC--ACATTTAGTGATTAATAAGGCAA-AGTTTAATGAAACTCATAGTTTCTACATGTACCATTAAAACAGACCAATGTCAGATAGCTG-TAAGATTAATTCTAAAAt-----gctaatttaaaataatgtaaccAGAACAGAAAACATACCATCATACCTCAGCATCA-AATGCCAGCTCGATTAAATACATCAAATACATCAAATGAT-ATGGTTAC--AATTCTGTGTATTTAAGTTCACAG-TTTTTCCATAGTACTGTAGAGAA-----------TTGTTCACTTTATTTA

a score=15452
s chr3           144960559 1633 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAACACCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGTTCTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAAGTAAAAATTTCCATATGG---GTTAAATTAAAT---TTTCAGAAAGCTGTTAAGGTCATTTCTGAGATGTTAGGTTAATTTAATATACCATAACTGTGAAGCAAACCCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGTACTTCATCTGGTTG--TAATTATGAAAGGCACTAGATTCTGTATATTTAAGTTCACAGATTGTTGTATAGCCCTTTAGGGGAATTATCAACTCTTATTCACATTATGTAGATTTTTGTCAGAAAAAATAGATTAGAAGCAGAAATCTGAAAAGATGAAAGAATTGCTGTATCAAGGTATCTTGACAAAACCTGAGTATTGGTGAGAATATTTGTGAGAGAAAAATATTGTAAAATGCCTATAAAGTGTTTGGAATGGTAGGAGCTTTTATAGCCAGTCACAAAAAAATAACCCAATtatatatactaataaatatataaatataaatataagtaatataaatataaatatataCTAGTGTAATAATTGATACTCATACTATT-GGCTTTGTTTACTCTACTATGTTTGAGAAGATACTAGGAGCATGTAATCAGTTTTTATCACATCTGTATATTAAAATAAGTTACCATAGTTAATGTTAGATAAGTTACCATAGTTTGAATGTTCTCATCGTCTTTAGTCCTGGAAAATCCCAGACTTTGTTCAAGCCCTGTCTTGGGAGCCATTTGATTCCATATAACTCCTTTCCTCTCCTTCCCCACTACAACATTTTGGGAGCATAGAAGGCTTGTAAGTCTCAATTAAATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGTGATCT----ATGTGTATAAATTTGCTGTCTTATGTGTCTTTTCTAGCCAACTGGATAAAGAATGTGATGAGGACAGAGGCTGGGTCTGTGT-GACTCTGTTTTCCAATCCTTGGCCTGACTCTTGCAAAGT-TGAGCTTAGAAGAAGTAGTTGAAC-ATCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATCACGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAAAACCATTATCATT-----TCATACTAGATTAGCTATCCTGATGGAAAGT-TAGAAAAAAGAAACTATAGAAAAA-GTATAGAAT---AGAGATAATTTCTGTTTTAGAATCATGGAGTTTATGTTCAATAATACTTGAAGAATATAAACAATTTTTCTGTCCT
s HiC_scaffold_1 131191772 1270 + 233722169 TTTTCGTGTCTCTGGTAAATGCAAACACAAA---CCTACCGCTGTGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCCTTATCTGAAGCcaattcctcctttcctcctaaAATGGAAATGCACAAGCAAAgttaatttctagaaaataagTGCTTACAC--ATTTAGTGATTAATAAAGCAAAGGTTTAAAGAAAGTCACAGTTTTCACATGTCCTATTAAAGCAGACCAGTGTCAGATAGCTGT-AAGATTAATTCTGAAATgcta-----atttaaaataagataaccTGGAAGGACAAGATACCAGCATATCTCAGCATCA-AATGTCAGCTAGTATAAATACATCAAATGATCAGACAATTAAAGTATGGTTACAGTTCTGTGTGTTTAAGTTCATGG-TTTTTATGCAGTACTGTAGAGAA-----------TTATTCACTTT--------------------------ATTTAAAGTACAGTTCTAATGA--------AGTTG-------------------------------------------------------------------------------GTGCTTAGA-----------TTCTGCAGGC------------------TAATTACAT------------------------------------CAGACATAAA---ACATTAGTGT--taatctatattctttttttttggctttttccattttttttttttt---------------------------tttttatc--------------------------------------------ggtactggggatcgaa----ctcac------------------------gactg---------cctg-cttgcaaggcaggcgcttatg-----------------------ccgct------------gagc------------taaatccc---caacccctaatcTATATTCTT------AAGAAGAAGTGTTGTCTGGTTATGTGATTTAATtagcagttttcttt--tctttccatacaATTCAGCACCAAGTACCTTCAGGACAGAGATTGTGTCTGGGTTGACTATGGTCTCCTGTCCCTGGCACAGCATCCTCAGAGCAGGAGCTCAAGAGAAGGTGCACAGCTGTCAACCCAGAGATTAACGCCTTCTTACCCAAAGCctagaatgtataaaaatattttaacctgTTTGGTTCCTCATCTGTGTGACTGCTGGATCTGCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAACATTTTTCAG-GCACAGTTAGCACTGTGAGTCATAC-AGATCAATGAGCAAACAGACAAAtacagagaacagaaagaaaaaaaaaacatgtagagTAGAAGAGAGCACCTTTGTTATAAAGTCA--GAATCTAGAATCAAC------------ATCTGGGTTATCTTTTTGTCCT

a score=15642
s chr3           144960559 1548 + 160039680 TTTCCTTGGTTATGGAAAAGGCAACCACAACACCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGTTCTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAAGTAAAAATTTCCATATGGG---TTAAATTAAAT---TTTCAGAAAGCTGTTAAGGTCATTTCTGAGATGTTAGGTTAATTTAATATACCATAACTGTGAAGCAAACCCCACCTTATTATCTTAGTATGGCAACCTCAGTTGCATGAGGTACTTCATCTGGTTGTAATTATGAAAGGCACTAGATTCTGTATATTTAAGTTCACAGATTGTTGTATAGCCCTTTAGGGGAATTATCAACTCTTATTCACATTATGTAGATTTTTGTCAGAAAAAATAGATTAGAAGCAGAAATCTGAAAAGATGAAAGAATTGCTGTATCAAGGTATCTTGACAAAACCTGAGTATTGGTGAGAATATTTGTGAGAGAAAAATATTGTAAAATGCCTATAAAGTGTTTGGAATGGTAGGAGCTTTTATAGCCAGTCACAAAAAAATAACCCAATtatatatactaataaatatataaatataaatataagtaatataaatataaatatataCTAGTGTAATAATTGATACTCATACTATTGGCTTTGTTTACTCTACTATGTTTGAGAAGATACTAGGAGCATGTAATCAGTTTTTATCACATCTGTATATTAAAATAAGTTACCATAGTTAATGTTAGATAAGTTACCATAGTTTGAATGTTCTCATCGTCTTTAGTCCTGGAAAATCCCAGACTTTGTTCAAGCCCTGTCTTGGGAGCCATTTGATTCCATATAACTCCTTTCCTCTCCTTCCCCACTACAACATTTTGGGAGCATAGAAGGCTTGT-AAGTCTCAATTAAATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGT-GATCTATGTGTATAAATTTGCTGTCTTATGTGTCTTTTCTAGCCAACTGGATAA--AGAATGTGATGAGGACAGAGGCTGGGTC-TGTGTGACTCTGTTTTCCAATCCTTGGCCTGACTCTTGCAAAGT-TGAGCTTAGAAGAAGTAGTTGAAC-ATCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATCACGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAAAACCATTATCATTTCATACTAGATTAGCTATCCTGATGGAAAGTTAGAAAA--AAGAAACTATAGAAAAA
s HiC_scaffold_1 131153767 1181 + 233722169 TTTTCGTGGTTATGGTAAATGCAAACACAA-ACCTCCCGCTGTTGGAG--CTCTCACCTGAATGGACTTCTGAGTGAGATCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTCCACAGCGTTATCTAAAGCCAATTCCTGTTTTCCTCCTAAAATGTAAATGCACAAGCGAGgttaatttctagaaaataagTGCTTACAC--ATTTAGTGATTAATAAGGCAAAAGTTTAATGAAAGTCAG--CTTCCACATGTACTATTAAAGCAGATCAGTGTCAGATAGCTGT-AAGATTAATTCTGAAATGCTA-----ATTTAAAGTCACGTAACCAgggtgc-----------tgggaatttagctcagcagcgtaagt-gcatgccttgc--------------------------------------------aagtgcgcag-------------------------ttgtgaattcg-attcccagtac------------caaaaaaaa---------aaaaaaaa----aaaaaaaaaaagaatcac-atatcAC--------------------------------ATAATCAGGAAGGTAAAAGATACCATCATGCCT----------------------------------CAG-CATCAAATATCAATTAGATTAAATACACAAATGATCAGATAATGAAGAATATG----------------------------GTTACAATT------------------------------------------------------------------------------CTGTGTATT----TAAGTT--CACGGTT-------------TTTACACAGT---------------------ACTTTTGGAAAACTGTTCACTTTATTTAAG----------------ATACAGTTATAATGAAGTTGTTGCCT----------------AGATTTTG---------CAGGCtaattaaatcagaaacaaagtACAAACTATATTCCTA-TGTTAGGAAGAATTGTCTGGTTATGTGATTTAATTagcagttttcttt--tgtttccatacAACTCGACTCTCCAAGTACCCTGAGAACAGAGATTGTGTCAGGTTTGACTCTGGTCTCCTGTCCCTGGCACACCACCCTCAGAGCAGGAGCTCAAGAGAAGGTGCACAGCTGTCAGCCCAGACAGTATCACAGTCCTATCCGAAGCCCGGAAtgtatagaaaacattttaaccTGTTTCAATGCTCATCTGTGTGACTACTGGCTCTGCAGATTGTCCCAGAGCAATAAAATGAACGATGACCCCGCTTTCTTTCACTGAATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACGTATTTCAGGCA--CATTAAC----CACTGTAGATCAAACAGATCAATGGGAAAATagacaaatatgaaaataaagaaaaa

a score=11954
s chr3           144960560 1544 + 160039680 TTCCTTGGTTATGGA-AAAGGCAACCACAACACCTCTAGGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATGAATATGCTCCATTGTTTTGTAGAACAACAGTT-CTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATA-AAGTAAAAATTTCCATATGGGTTAAATTAAATTTTCAGAAAGCTGTTAAGGTCATTTCTGAGATGTTAGGTTAATTTAAT-------ATACCATAACTGTGAAGCAAACCCCACCTTATTATCTTAGT---ATGGCAACCTCAGTTGCATGAGGTACTTCATCTGGTTGTA--ATTATGAAAGG-CACTA-GATTCTGTATATTTAAGTTCAC-AGATTGTTGTATAGCCCTTTAGGGGAATTATCAACTCTTATTCACATTA------------TGTAGATTTTT--GTCAGAAAAAATAGATTAGAAGCAGAAATCTGAAAAGATGAAAGAATTGCTGTATCAAGGTATCTTGACAAAACCTGAGTATTGGTGAGAATATTTGTGAGAGAAAAATATTGTAAAA---------TGCCTATAAAGTGTTTGGAATGGTAGGAGCTTTTATAGCCAGTCACAAA----AAAATAACCCAATtatatatactaataaatatataaatataaatataagtaa-----tataaa----------------tataaatatataC-----TAGTGTAATAATTGATACTCATACTATTGGCTTTGTTTACTCTACTATGTTTGAGAAGAT--------------ACTAGGAGC-------------------------ATGTAATCAGTTTTTA-------TCA--------------CATCTGTATATTAA----------AATAAGT-------TACCATAGTT------------------------------------AATGTTAG--ATAAGT-------TACCATAGTTTGAA-----------------------------------TGTTCTC---------------------------------------------------------ATCGTCTTTAGTCCT-------GGAAAATCCCAGACTTTGTTCAAGCCCTGTCTTGGGAGCCATTTGATTCCATATAACTCCTTTCCTCTCCTTCCCCACTACAACATTTTGGGAGCATAGAAGGCTTGTAAGTCTCAATTA-AATTTTATTTT-GTATTCT----TCCTGTTATGAAGAAATGTGATCT------------ATGTGTATAAATTTGCTGTCTTATGTGTCTTTTCTAGCCAACTGGATAAAGAATGTGATGAGGACAGAGGCTGGGTCTGTGTGACTCTGTTTTCCAATCCTTGGCCTGACTCTTGCA-AAGTTGAGCTTAGAAGAAGTAGTTGAACATCAGCTCTACATTTATACACAACAACTGAAAGTCTGAGA-TGTAGAGATCACGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAAAACCATTATCATTTCATACTAGATTAGCTATCCTGATGGAAAGTTAGAAAAAAGAAACTATAGAA
s HiC_scaffold_1 131030754 1744 + 233722169 tttcttatttatggCTAAATGCATAGTTGAAAGCCCAAGGAGTG--AAAGCTCTGACCTGAAAGGATCCCTGGGAGAGATGAGCATTTCCTAATCCAAAGGGCCTGAAAGCATCAGTGAGACTGTTCCTGTAGGCTTGATCTGAAGCATAATAATGTTTTCCTCCTAAAATGTAAATCCATTAACAAAGTCACTTTCTCAAA-AGCAGCTATTTATCACATTTTAATGACTTATAAGGTAACAATATAAACAGAAACCACAGTTTtgctat---taaaatagaaaattctgaaa-----tgaGATGGATACAAAGAT--TAActcaattttatttcagaaatgctATAATTAGGAAGCA-------CCTCATCATCCTGCTTACCTGAGAATTTTAGTCTGCTGAAATACATCAAATAACCACAGAATTCTAAAAAGATGCTACAATTCTACATAC--AAGTCCTTGATGTCTTTATGCAGTCCTTTAGGAGAACTGTTCACTTTTCCTTAAGTTACACTCTCAATAGTATTGACTTTTAGGTTGTCCAGTTGAGGTCAgaatcaacaaattaaaaaagTTAGAGAGATGCAATATTCAGTTATATGGAGAGTAACTG----TCACTGAGGAagt-------agaaaaatagcaaaaaagcaGAATGATTCCCCCAAATTTACTAATTTTGT-GGAGCCATTTGAGTCAGAGATAAATTTTAAAGTGGCcctaa-atacattttgaaaaaaaattggatGTTTATGCAACTAGGCATTTATAAAGCAATtatatatttggtatatttagATACCAACTTAATGCAATAATTGG----CATGTTATAAATTATTCATTCTTTGCCACATTTAGAAACAtgactctaaataaaaaataacagctaCCATGGTTAATATTTACCTGGAAATGTCATTGTTATTTAGAGCTTTTCAGCCTGAGCTTCTGTCAGTTGTATCCTACCTTATCCAGTGATGGGTGGACCTATAGCATAGGTGGTGCAGTGGGCTGTTTACTGTCCTCGAAAGCTCTAAAGGTTAGCCATCAGTGGGCTTATTCTATGGTCTCAGGGATGGGAATCTATGCTGTGGGCTCATGGGAATACTGTTCCCTCCATGTGCCTTGCACTGTCACTGTAACATAATATTTTCCCCCTTCATGCCCTAGTTATCTTCTCTTACCCTTTTCCAAAGAGAAATTGACACCTT---CAAATCCCAGCTCAGAAGTCACCTCATTTCTGTTACCTTCTGTCCCTTACT------CTGTACAGTCGTGGGAAAATTGATGGCTTCCTCTGCTCACATACAACTTTATTCTCATATACTGTATTCCTCTTGTGAAggaattttgtttcattattttattatgtg-----actagcaattttattcatttttc--accTTGTGGGACTGTGAGCACCATGAAAATGGAGACC-----------------------------------------TGCACAGGTGGAGCTCAAGAAAATTTGTCAG------GTTCTATGTTCATGTATTGC--CT-----TCAGAGAATATATGGATCATAATTTACCTGTTATACTGCTCATCACACTTAGTATGGGATCAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCCTTCTATTTGATGATGTTTTTCCTTAATTACCTACAAACAGAATTCAGGA---CATTATCAGTTGTTCCTCGATTGAATGGACAGATGAggaattagaaaaaagagaaaataaaa

a score=6006
s chr3           144960597 244 + 160039680 GGGATGGGAAAACACTGACCTGAAGTGACTTCTGGGTGATATCAGCATTTTCTGAAGCCAGGGCCCCGAAAGCATCAATGAGTCCATTGTTCTGGGCTTCATCTGTAGCAAGCTTATGGTTTCCACCTAAAATATGAATGAAT-ATGCTCCATTGTTTTGTAGAACAACAGTTCTTACTATAATTTAATGATTAACAGTGTAACAGTTCAAATAAAGTAAAAATTTCCATATGGGTTAAATTAAA
s HiC_scaffold_1 131295996 244 + 233722169 GAGGAGGAAAAACTCCTACCTGGATGGAGCGCTGAGCGATGGCGCCATTTCCTGAGGAAAGGGCCCCAAAAGCATCAATGAGGCCATTGTTTTGAGCCTGATCAGAAGCATATGTCTGCAAACCTCCTAAAATGCAATTACATCATCAGAAGTTATTTTCCAGACAGCAAGTGTTCACAACACTTTAGCTGTTGCTAAAATGAtggaatacataaaataaatatcg-catttttattaaagtaaa

a score=11354
s chr3           144961591 516 + 160039680 AATTAAATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGTGATCT----ATGTGTATAAATTTGCTGTCTTATGTGTCTTTTCTAGCCAACTGGATAAAGAATGTGATGAGGACAGAGGCTGGGTCTG-TGTGACTCTGTTTTCCAATCCTTGGCCTGACTCTTGCAAAGT-TGAGCTTAGAAGAAGTAGTTGAAC----ATCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATCACGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAAAACCATTATCATTTCATAC--TAGATTAGCTATCCTGATGGAAAGTTAGAAAA-----AAGAAACTATAGAAAAA
s HiC_scaffold_1 131079057 503 + 233722169 aattaa----taaTCTATATTTCTA-TGTTATAAAGAAATATTGTCTGGTTATGTGATTTAattagcagttttgttttctttctcca---------------agTTCCCCGAGAACAGAGATTGTGCCTGGTTTGATTCTGGTCTCCAGTTCCTGGTACAGCATTCTCAGAGCAGGAGCACAAGAGAAGG---TGCACTGCTGTCAGCCCAGACAGTAACACAGTCCTATCCGGAGCccagaaaggatagaaaacacTTTAACCTGTTTCAATGCTCATCTGTGTGACTGCTGGATCCGCAGATGGTCCCAAGGCAATAAAATGAATGACGATCCCGCTTTCTTTCACTTTATTAACACAATTGCTTGCACCGTTGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAATGT-ATTCAGGCA--------CATTAAGCACTGTAGGTCAAACAGATCATTGGGAAAGTAgacaaatatgaagaaaataaagaaaaa

a score=13721
s chr3           144961596 563 + 160039680 AATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGT-GATCTATGTGTATAAATTTGCTGTCTTATGTGTCTTTTCTAGCCAACTGGATAAAGAATGTGATGAGGACA-GAGGCTGGGTC-TGTGTGACTCTGTTTTCCAATCCTTGGCCTGACTCTTGCAAAGTTGA-GCTTAGAAGAAGTAGTTGAAC-ATCAGCTC-TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATCACGTGTTA-CCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAAAACCATTATCATTTCATACTAGATTAGCTATCCTGATGGAAAGTTAGAAAA-----AAGAAACTATAGAAAAA-GTATAGAATAG-AGATAATTTCTGTTTTAGAATCATGGAGTTTATGTTCAATA
s HiC_scaffold_1 131116596 563 + 233722169 AGTGTTAATCTATATTCCTA-TGTTATGAAGAACTGTCTGGGTATGTGATTTAATTAGCAGTTTC---TATTCTTTCCATACAAGTCGGCTCCAAGTACCCTGAGAACACGAGATTGTGTCAGGTTTGACTCTGGTCTCCTGTCCCTGGCACAGCACCCTCAGAGCAGAAGCTCAAGAGAAGGTGCACAGCTGTCAGCCCAGACAGTATCACAGTCCTATCCGAAGCCCGGAAtgtatagaaaacattttaaccTGTTTCAATGCTCATCTGTGTGATTACTGGCTCTGCAGATTGTCCCAGAGCAATAAAATGAATGATGACCCCGCTTTCTTTCACTTCATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACGTATTTCAGGCA--CATTAAC----CGCTGTAGATCAAACAGATCAATGGAAG--TagacaaatattaagaaaataaagaaaaatatgtagaGTAGAAGAGAATCTTTGGTTTAAAGTCA--GAATCTACAATCaata

a score=13392
s chr3           144961596 523 + 160039680 AATTTTATTTTGTATTCTTCCTGTTATGAAGAAATGTGATCT----ATGTGTATAAATTTGCTGTCTTATGTGTCTTTTCTAGCCAACTGGATAAAGAATGTGATGAGGACAGAGGCTGGGTCTGTGT-GACTCTGTTTTCCAATCCTTGGCCTGACTCTTGCAAAGT-TGAGCTTAGAAGAAGTAGTTGAAC-ATCAGCTC---------TACATTTATACACAACAACTGAAAGTCTGAGATGTAGAGATCACGTGTTACCTGTTAAAATGCTCATGTTTGTTACAGCTAAGTCAGCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAAAACCATTATCATT-----TCATACTAGATTAGCTATCCTGATGGAAAGTTAGAAAAAAGAAACTATAGAAAAAGTATAGAATAGA
s HiC_scaffold_1 131242752 525 + 233722169 AGTGCTAATCTATATTCTT------AAGAAGAAGTGTTGTCTGGTGATGTGATTTAATtagcagttttcttt--tctttccatacaATTTGGCACCAAGTATCCTGAGGACAGAGATTGTGTCTGGGTTGACTCTGGTCTCCTGTCCCTGGCACAGTATTCTCAGAGCAGGAGTTCAAGAGAAGGTGCACAGCTGTCAACCCAGAGATTAACGCCTTCTTACACAA--------AgcctaaaatgtataaaaatattttaacctgTTTGGTTGCTCATCTGTGTCACTGCTGGATCTGCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAACATTTTTCAG-GCACAGTTAGCACTGTAGGTCACAC-AGATCAATGAGCA-AACAGACAAAtacagagaacagaaagaaaaaaacacgtAGAGTAGA

a score=6307
s chr3           144961877 162 + 160039680 GCCGATGGTCCCAAGGCAATGAAATGAACTATGGACCCGCTGTCTTTCACCTCATCAATACAGTCTTTGGCTGTGCTGTCCTCACCATCACTCAACAGCAAGATCTCAGTCCCATCTGTTTGGTATTCTCCATTTTTAAATACCTGCAAGCATAATTCAGAA
s HiC_scaffold_1 131297816 159 + 233722169 gcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCCATCTGTTGGATACTTT---TTCTTGATCACCTAAGGACATGATTCAGGA

a score=12449
s chr3           144963491 654 + 160039680 CTCTTAAGATTAGTTATGCTAAAATCAAGAGACAAGTAAGAGCAGTAGAACTTCACTT-----TGTCCTAAAAGCAAAACAAAGATCAAAATACATGTGCAGTGGGATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAATGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGAGTTTATTGACAAGAACTAGATAATTATTAATTTGTATCTGTGGAAGAAAGCAATTATAATTTTAACTGGTAAATTAATAAGTGTTGTTATAGGTAACATGGGGCACATGAAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGCTAAGTAATCAGGTTAAAGGTGGGACTTG-----------GGTTGAAGCTAAG--GCAATGATTCACATCTTAGCACCACAGTTAACCCCATAATCACTCCT
s HiC_scaffold_1 131032519 602 + 233722169 cttttaaaaatattt----taaaatgcaga---aagtaTTTGCAGTAGCAATTAACATAGAAATGTCcttaaaattaag-aaagataGACTATTTTTTGCAGAACAATTTTTACCTGAAGAGCAGATTCGATTCCAGAGCAGATAGAAATTCCTCCTGAAGCTTCTGTAGGTAAGCTCTCTAgaagttttcttctttcattgtAGCTAGTTACTTGGACTAGCTTACTTTTGATGTGAGCGGTACTATCATAAGCAACTATTCCCACCCAGGAACCATTTTCAACAGTTTGAAGCAGGAAAATTTTAGCTGCTTGGTTCATTCGATTTAGCCGGTTTAAATCCTAAATGGTGAATCACAAGAAAACAGACCAAATAGTTTTGCCTGAAGGGTAACAGCAGATCATATAAAGTATGGCAAGACTTTGGT------------ATAAACAGTAATT----------AAAGGAAACAAT-----------------------------GTATTATGGAGCACACATAGTTTAGCAAGGAGCTCATGCTTTTAT--TAACGGTAACTCTTGGCTGCTAAGTACCCAAATTAGTGATAGGAATAGAAGAAAGAGCAGATTGGAATTGGGGAGTGGCAGTTCATATCTTAGA---------GATTCTATAATCACTCCT

a score=7782
s chr3           144963555 323 + 160039680 AAAAGCAAAACAAAGAT---CAAAATACATGTGCAGTGGGATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCA-TGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAA--TGTTTTTCAACTGGAAGAT
s HiC_scaffold_1 131300571 328 + 233722169 AAAAACATGGCAAACACTGGCAAACCACAATAGCAGAGCATATCTCACAGTAAATGCTGATTGAAGGCCGGAGCAGATGGATGTCCCTCCTGAAGAAACTGTTGGTAAGTGTTTGGTGAGTGCATCTCTGTCTGCATCACTCTTTATCTGGACAAGTTCACTTCGTACTTG-GGCGCTACCGTCAAATGTTACCAGCCCAACCCAGGACCTGTCCTCCACCGTCTGCAGCAGGAAAAACTTGGCCGCTTGATTCATGCGGTCAAGGCGGTTATCACTCTGGATGgacaagcaaaagaaaagcaatcaagTTGGATTTAAACGAACAGAT

a score=10048
s chr3           144963591 331 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAATGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGC-TTAGAGTTTATTGACAAGAA
s HiC_scaffold_1 131156833 331 + 233722169 GACTTTTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGTATCTCTTTCGCTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATTCGAGTGAGGCGTTTATCAAGctgaataaaaagcaa-aagaaaacaaccaattaATTTTCGGTTGGAAGGtaataacatcacacataatgaGTACATAAGACTGTCTTAACATGAA

a score=11963
s chr3           144963591 519 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAATGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGAGTTTATTGACAAGAA---CTAGATAATTATTAATTTGTATCTGTGGAAGAAAGCAATTATAA-----TTTTAACTGGTAA-ATTAATAAGTGTTGTTATAGGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGCTAAGTAATCAGGTTA-----------AAGGTGGGACTTGGGTTGAAGCTAAG-GCAATGATTCAC
s HiC_scaffold_1 131118545 528 + 233722169 GATTTTCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTTTTTCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCGGctatc----------aaaaagcaaaagaaaacaaccaagtAGTTTTCAACTGGAAGATAATAGCATCACACATAATGAGTATATACA-TTTACCAATAAGAATTTTTCAATAATAACTA--------CTATGACTGATaaaaattgttctcttttttcaacTGATAATGTTGAAAAATATGACTGT--GTATTATGGGACACGCATGGTTTAGTaaggagtttatatttttaaactagaGATGATTACTGGCTGCTAAATACTGCAGTTAGAGATTGAAGGAAGATGGAGATTGAGTTAAAAATGTGCATGATGATTCAC

a score=12734
s chr3           144963591 331 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAATGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGAGTTTATTGACAAGAA
s HiC_scaffold_1 131081410 331 + 233722169 GATTTTTACCTCAAATGCTTTTTCAATCCCAAGGCAGATGGAAGTTCCTCCGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCACTGTTGCTTCTTATTTGTATTAGCTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATCCCTACCCAGGACCCATTTTCCACAATCTGCTGCAGGAAAAGTTTTGCTGCTTGATTCATTCGATTCAGCCGGTCACTGCCctgaatgaaaaagtaaaagaaacccACTAAGTAGTTTTGAACTTGAAGATAATAGCATCACCCCTAATGAGTATAAAGAGTGTCTTAACATGAA

a score=13084
s chr3           144963591 519 + 160039680 GATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAATGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGAGTTTATTGACAAGAACTAGATAATTATTAATTTGTATCTGTGGAAGAAAGCA-ATTATAATTTTAACTGGTAAATTA-ATAAGTGTTGTTATAGGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGCTAAGTAATCAGGTTAA-----------AGGTGGGACTTGGGTTGAAGCTAAG-GCAATGATTCAC
s HiC_scaffold_1 131194398 531 + 233722169 GATTTTCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATTCGAATGAGGCGGCTACCAGCCTGAATGAAAAGCGA-AAGAAAACAACCAAGTAGTTTTCAACTGGAAGATAACAGCATCACACATAGTGAGTATATACA-TGTACCGATAAGAATTTTTCAA-TAGTAACTGCTATGACTGGTAAAAATTGTCCTCTTCTTTCAACTGATAATGTAGAAAAATATGACTGT--GTATTATGGGACACGCACTGTTTAGTAAGGAGTTTATAA------ACTAGAGATGATTACTGGCTGATAAATACTGTAGTTAGACTTTGAAGGCAGATGGAGATTGAGTGAAAAATATGAATTATGGTTCAC

a score=13528
s chr3           144963592 539 + 160039680 ATTTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCTCTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGATCATAAGACTGAGTGAAAAATGACAAGAAAAGAAATGAATGTTTTTCAACTGGAAGATGAGAGCAGATTTCATAAAAATTGCTTAGAGTTTATTGACAAGAACTAGATAATTATTAATTTGTATCTGTGGAAGAAAGCA-ATTATAATTTTAACTGGTAAATTA-ATAAGTGTTGTTATAGGTAACATGGGGCACATG---------AAGAAGTTCATAGCTTTCTCCTAGAGGCTGCTTCCAGTGGCTAAGTAATCAGGTTA-----------AAGGTGGGACTTGGGTTGAAGCTAAG-GCAATGATTCACA-----------TCTTAGCACCACAGTTAACC
s HiC_scaffold_1 131244753 562 + 233722169 ATTTTCACCTCAAATGCTTTTGCAATCCCACTGCAGATGGAAGTTCCTCCGTTAGCATATGTAGGCAAGCTCTTCACTAGGGTGTCTCTTTCAGTATTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAATTTTGCTGCTTGATTCATTCGAGTGAGGCGGCTACCAGCCTGAATGAAAAGCGA-AAGAAAACAACCAAGTAGTTTTCAACTGGAAGATAACAGCATCACACATAATGagtatataca-tgtaccaataaGAATTTTTCAA-TAATAACTGCTATGACTGGTAAAAATTGTCCTCTCTTTTCAACTGATAATGTAGAAAAATATGACTGT--GCATTATGGGACATGCACCATTTAGTAAGGAGTTAATAA------ACTAGAGATGATTACCGGCTGCTAAATACTGCAGTTAGAGATTGAAGGAAGATGGAGATTGAGTTAAAAATGTGCATGATGATTCACAAGGTGGAGATGCTTTAGTGACACTGTTAGCC

a score=5402
s chr3           144963594 226 + 160039680 TTTCACCTGAAATGCAGCCTTGATTCCAGAGCAGATGGACGTCCCTCCATTGGCACTTGTAGGTAAGGTTTGCAAGAGCTGGTTTCT-------CTCGATGTCACTGTTTATTTGGATCAGCTCATGCACAATAGTGGCCTGGCTACTAAAGTGCACCATCCCTACCCAGGACCTATTTTCAATTATCTGGCTTAGAAAGTATTTTGCTGCTTGGTTCATTCGATTCAGGCGA
s HiC_scaffold_1 130987495 226 + 233722169 ttttacctgGAATCCTTCTTTGAGTCCGCTGCAAATTGAAGTTCCACCACTAGCAACTTGAGG-AAGTTTTG----AGGTGATGTTTAGATAGGCCC--TATCATCAGTTATTTTTATTAGGTTAGTTTGGATGGTAGCATAATCTTCAAATGTGACCATCCCGACCATGGATCCTTTTTCAATAATTTGAATTAAATACATTTCTGCTGCTTGATTCATTCGAATGAGACGA

a score=32637
s chr3           144964907 1580 + 160039680 CCCTACTTTGCCTTTAAACACAGGTCTACCAGGACCCTATCTGGGGTAGTTAGTCTATTCATCTCTCAATCGG-----CTTTCTCTTCTCAGTGACATTTCTTGGGCTATTTGTGATTTTTG--------AATGTTCTGACTTCCAGGAAACCCCATGTCACTGTGGCTCACCTTGTCATTCCCTGCCATTCTTTGCCCTTT-CAATAA-CAACTTTCCCTTCCTTGCTGACGCTTTAATTTCTG--CTTTAGCATGTC-TGTCCCACCACACAGTGCAGTCA-----CTCAGTGCTTTATCACATAACACCTGCTTGTCTGTGCCTCATATTCATTTTAACAGCTATCTATTGGTCACACATATATTATGAACTCTGG--------------------------ATCGGATGAGGTTCTAGTTCCAAGTGGAACTCTTAGTCTAATCGGGCGAGTCACAGGCAGTATCAATAAAATATACAGTACCGGAAACATGCAAAAGACAGT-TTTGGAACTGGCATAGGGTTAGCTCCTATATAGTACCCCAAGTGCCCAGCCCTTCTCTTGGTGAAAATTAATGTGTCTACTAAATTGTGGGGGACAGGAATGACTTATGTAGGCAGGTAATGCTGAGACAGAGAGAAAAA-----CATTTCTGGACTATAATGATATCTGGTTTTTTGGtttgttttatgagacagagtctaaatgcaacccaactgactttgaacttgcttagtcccccaaatgctaggattacaagaacgtactttcattgctcaTTCTAAGTAAATTATCAACTTCTCAAGTATGTGCAGCACTGATTTAAAGTCTAGCACACTGCTTGCTATTCTCTGCATGATAAAAGAAGGAATGACTGCATGTAGCCATTTGTTCTTAATGGTGATGCCTTT------TTTTTAATGTATGAAGAGAGCACTT---GAACACTTCAGATGACAT--------------CATGT-GGGCATTCTGCTAATTGTTCCTGCTGCTTGAGCTGAAATGAGTTCAAGTATACACTGATATACCCTATTCTCATTTCTTTTAAGCATTTGATATGCAGGATTAATGGTTGAAAACGAT--ATCCTTTCAGTATCGTGTTCTGACTC-------AAGGCT--ATCAGAG---------TTCTCCTTA-TAAAT---TTTCTGGATCAAAAGTGGATACCCTTTG-TTAGCTCTTTTTAGAT-----------TTTCTCTAAGTATATTTTTT-TTTCAATATCTTTCAGGTCGTGATCTCAGGAAGTAATAGTATTTTATGACATCATAAAATT---AAAAAGCCA--CATAAGTGGTGTTTAGGGTGTGTGTTTGCTCTTTGGTTATCCCTATTTCTATACTCAAAACCAAAGCAAACAAATGAAAACGAGCCCA-GGAACTTACAGTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGAGGGTGACGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCTA-AAAGTGGATTAAATTGTAGAAAATTACTATTT-------------CATGTATTTAAAAA
s HiC_scaffold_1 131159727 1506 + 233722169 CTTTATTTTATCTGTAAGCCTATCTCTAACAGCACTCTGCCTGGAGGAGCT--------CATCTTTCTATCAGGAACCTCTTCTCTCTTCAGTGACATTTGTTGGATCACCTGTGTGTGCTGGTGTCAGCACTTTGCTGGCCTCTTTGAAATCCTGCATTACTGTGGCTCATTTCATTAATCTGTATCATCCTCTGCCCTTTTCAATAAACATCTCCCAAGTATTGGCTGAGGTTTTTATTTCTGGTCTTTAGCATGTCCTATTCTACCTCAA---GCATTTATCCTTCTTGACAGCCTATCAGGTTACAT-TGCTTGTTTGTAGTTCAC--TCATTTCAGCAATTATTTATTGATCACTCCTATGTAATGAACTCTGTTCTATGCCACAAGACTACAAAGATGCATTGGACAAGATTCCAGTTCCTAGAGAATCTCCCAATCTGGTTGGTAGAAGCACCCGTGCTTTCAAAATTATATATGGTAATAGAGGCAAGCACAGGGAAGTATTGGGAGTTAGCAGAAAG---GCC----TACAGCAACTGATACAGCCAGTTCATTTCCTAGAGGAAGT----ATCTCTCCTAAATTG--GGAGGTAAGTCTGACTTA----ACCAGATAATG--GGGAAAGCGAGAAAGAGCATTCAGTATTGAACCATGAAG-----------------------------------------------------GACATGGATCTC-------------------------------------------------------------TATC--------------------------CTCAGAGCCTAGCACAGTGCCTTTCATTTGCTGCATGATAATGGAAGGAATGACTGCATCTAAACATACATTCTTCCttgtgatatttttgtttgtttctttgagtaTAAAGAGGTCATTTATAGTACAAATAAGGTAGCACAAATAAGGAAAATCCATGTTAGGGATCCTGATGAATGTTTCCATTCCTTAACCTGAAATGTGGTTTAATGTCCACTAAT---------CCTCATGT-TCTCAAGCATTTTCAAAGAACGAATCATGGCTAAAAGCAATTAAGTccttcaatctctagtactgacCTTCTAACTAAAGCTTTACCAGAGAGAGCTTCACTCTCCATAGTAAatcattttctgga--aaaaaaagacaCTCTGGGGTTAGGTCTTTTGAACTCTACTGACATCTTTCCTTTACTATAAGTTTTATTGCAATATCTTG-AGGACATGATCACCAGAAATGATGACACCTTATGCCACCATATAATTTGGAACAATCCAGGCACAGGTAGAATACAG--TGTGTTCCTAGCATTTAACTACCTCCACTGCTATGCCCAGAA-----------------AAATAGGCCTACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGGTAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaat-----gaaaacatcattttgCTGCAAACCaccatatattaaaaaa

a score=31443
s chr3           144964907 1580 + 160039680 CCCTACTTTGCCTTTAAACACAGGTCTACCAGGACCCTATCTGGGGTAGTTAGTCTATTCATCTCTCAATCGG-----CTTTCTCTTCTCAGTGACATTTCTTGGGCTATTTGTGATTTTTG--------AATGTTCTGACTTCCAGGAAACCCCATGTCACTGTGGCTCACCTTGTCATTCCCTGCCATTCTTTGCCCTTTCAA--TAACAACTTTCCCTTCCTTGCTGACGCTTTAATTTCTG--CTTTAGCATGTC-TGTCCCACCACACAGTGCAGTCA-----CTCAGTGCTTTATCACATAACACCTGCTTGTCTGTGCCTCATATTCATTTTAACAGCTATCTATTGGTCACACATATATTATGAACTCTGG--------------------------ATCGGATGAGGTTCTAGTTCCAAGTGGAACTCTTAGTCTAATCGGGCGAGTCACAGGCAGTATCAATAAAATATACAGTACCGGAAACATGCAAAAGACAGT-TTTGGAACTGGCATAGGGTTAGCTCCTATATAGTACCCCAAGTGCCCAGCCCTTCTCTTGGTGAAAATTAATGTGTCTACTAAATTGTGGGGGACAGGAATGACTTATGTAGGCAGGTAATGCTGAGACAGAGAGAAAAACATTTCTGGACTATAATGATATCTGGTTTTTTGGtttgttttatgagacagagtctaaatgcaacccaactgactttgaacttgcttagtcccccaaatgctaggattacaagaacgtactttcattgctcaTTCTAAGTAAATTATCAACTTCTCAAGTATGTGCAGCACTG-ATTTAAAGTCTAGCACACTGCTTGCTATTCTCTGCATGATAAAAGAAGGAATGACTGCATGTAGCCATTTGTTCTTAATGGTGATGCCTTT------TTTTTAATGTATGAAGAGAGCACTT---GAACACTTCAGATGACAT--------------CATGT-GGGCATTCTGCTAATTGTTCCTGCTGCTTGAGCTGAAATGAGTTCAAGTATACACTGATATACCCTATTCTCATTTCTTTTAAGCATTTGATATGCAGGATTAATGGTTGAAAACGAT--ATCCTTTCAGTATCGTGTTCTGACTC-------AAGGCT--ATCAGAG---------TTCTCCTTA-TAAAT---TTTCTGGATCAAAAGTG-GATACCCTTTG-TTAGCTCTTTTTAGAT-----------TTTCTCTAAGTATAT---TTTTTTTTCAATATCTTTCAGGTCGTGATCTCAGGAAGTAATAGTATTTTATGACATCATAAAATT---AAAAAGCCA--CATAAGTGGTGTTTAGGGTGTGTGTTTGCTCTTTGGTTATCCCTATTTCTATACTCAAAACCAAAGCAAACAAATGAAAACGAGCCCA-GGAACTTACAGTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGAGGGTGACGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCTA-AAAGTGGATTAAATTGTAGAAAATTACTATTT-------------CATGTATTTAAAAA
s HiC_scaffold_1 131084392 1509 + 233722169 CTTTATTTTATCTGTAAGCCTATATCTAACAGCACTCTGCCTGGAGGAGCT--------CATCTTCCCATCAGGAACCTCTTCTCTCTTCAGTGACATTTGTTGGATCACCTGTGTGTGCTGGTGTCAGCACTTTGCTGGCCTCTTTGAAATCCTGCATTACTGTGGCTCATTTCATTAATCTGTATCATCCTCTGCCCTTTTCAATTAACATCTCCCAAGCATTGGCTGAGGTTTTTATTTCTGGTCTTTAGCATGTCCTATTCTACCTCAA---GCATTTATCCTTCTTGACAGCCTATCAGGTTGCAT-TGCTTGTTTGTAGTT--TACTCACTTCAGCAATTATTTATTGATCACTCCTATGTAATGAACTCTGTTCTATGCCACAAAACTACAAAGATGCATTGGACAAGGTTCCAATTCCTAGAGAATCTCCCAGTCTGGTTGGTAGAAGCACCCGTGCTTTCAAAATTATATATGGTAATAGAGGCAAGCACAGGGAAGTATTGGGAGTTAGCAGAAAG---GCC----TACAGTGTCTGATACAGCCAGTTCATTTCCTAGAGGAAGT--ATCTCTCC-CTAAATTG--GGAGGTAAGTCTGACTTA----ACCAGATAATG--GGGAAAGCGAGAAAGA---------------------------------------------------------------------------------------------------------------------------------GCATTC-------AGTATCGAACCATGAAGGACATGGATCTCTATCCTCAGAGCCTAGCACAGTGCCTTTCATTTACTGCATGATAATGGAAGGAATGACTGCATCTAAACATACATTCTTTCTtgtgatatttttgtttgcttctttgagTATAAAGAGGTCATTTACAGTACAAATAAGATAGCACAAATAAGGAAAATCCATGTTAGGAATCCTGATGAATGTTTCTATTCCTTAACCTGAAATGTGGTTTAATGTCCAATAAT---------CCTCATGT-TCTCAAGCATTTTCAAAGAGCGAATCATGGCTAAAAGCAATTAAGTtcttcaatctctagtactgacCTTGTAACTAAAGCTTTACCAGAGAGAGCTTCACTCTCCATAGTAAatcattttctggaaaaaaaaaaagacactcttGGGTTAGGTCTTTTGAACTCTACTGACatctttcttt---tatataaattttattgcaATATCTTG-AGGACATGATCACCAGAAATGATGGCACCTTATGCCACCATATAATTTGAAACAATCCAGGCACAGGTAGAATACAG--TGTGTTCCTAGCATTTAACTACTTCCACTGCTATGCCCAGAA-----------------AAATAGGCCCACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaat-----gaaaacatcattttgCTGCACACCaccatatattaaaaaa

a score=16876
s chr3           144965739 778 + 160039680 TAGCCATTTGTTCTTAATGGTGATGCCTTTTTTTTAATG--TATGAAGAGAGCACTT---------GAACACTTCAGATGACATCATGTG-GGCATTCTGCTAATTGTTCCTGCTGCTTGAGCTGAAATGAGTTCAAGTATACACTGATATACCCTATTCTCATTTCTTTTAAGCATTTGATATGCAGGATTAATGGTTGAAAACGATATC-CTTTCAGTATCGTGTTCT-------GACTCAAGGCTATCA----GAGTTCTCCTTATAAA--------TTTTCTGGATCAAA-AGTGGATACC-----------CTTTGTTAGCTCTTTTTAGATTTTC---TCTAA---GTATATTTTTTTTTCAATATCTTTCAGGTCGTGATCTCAGGAAGTAATAGTATTTTATGACATCATAAAATT----AAAAAGCCAC--ATAAGTGGTGTTTAGGGTGTGTGTTTGCTCTTTGGTTATCCCTATTTCTATACTCAAAACCAAAGCAAACAAATGAAAACGAGCCCAGGAACTTACAGTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGAGGGTGACGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCTA-AAAGTGGATTAAATTGTAGAAAA-------TTACTATTTCATGTATTTAAAAATGATCTGGAAAA----GGAAGCACAAGTATGTCC
s HiC_scaffold_1 131198773 794 + 233722169 tatccatatattttta----tgatgattTTGTTTGTATGAGTGTGAAGAAGTCACTCATACAGATGGTACAAATAAGATAATACTATGTGAGGAACACTGCTGATTGATCTTTTTAA--AACCTGGGATAGTGCTTAGCAGCCATTACTCCTCAAGGTTCTCACACATTTTCA-------ATAAAAGGGACT--TAGcttaataaaatttcattttcaatccCCAGCTCTTATCTTTGAAACAAAGCT-TCACTATGAGCTCTCTGCACTAAACCATCTATTTCCTTGAGAAAACAATGGAGACAGCTGGGTAAGGTCTTGTTAACTCTGCTGACATCTTTGTTTCTTAACTGCAAGTGTTCTTTGCAGTATCTG--GAATCATGATTCCAAGAAATGATGGCACTTTAT-----CTTAGAAGTTTGGGACAATCCAGGGACAGGTAAAGTACAGCATGTT------CCAGTCAGTTATCTCCATTTCTAATCTCAGAA----------------AAAATGGGCCCA---ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaa----tagaaaagtaatttttattatacCATACATTAAAATACTTACTTGTAAACCTCAAAAGCTAAACTATGTCC

a score=15073
s chr3           144965747 752 + 160039680 TGTTCTTAATGGTGATGCCTTTTTTTTAAT--------GTATGAAGAGAGCACTT---------GAACACTTCAGATGACATCATGTG-GGCATTCTGCTAATTGTTCCTGCTGCTTGAGCTGAAATGAGTTCAAGTATACA-CTGATATACCCTATTCTCATTTCTTTTAAGCATTTGATATGCAGGATTAATGGTTGAAAACGATAT-CCTTTCAGTATCGTGTTCTGACT-------CAAGGCT---ATCAGAGTTCTCCTTATAAA--------TTTTCTGGATCAAA-AGTGGATACC-CTTTGTTAGCTCTTTTTAGATTTTCT--------------CTAA--GTATATTTTTTTTTCAATATCTTTCAGGTCGTGATCTCAGGAAGTAATAGTATTTTATGACATCATAAAATTAAAAAGCC---ACATAAGTGGTGTTTAGGGTGTGTGTTTGCTCTTTGGTTATCCCTATTTCTATACTCAAAACCAAAGCAAACAAATGAAAACGAGCCCAGGAACTTACAGTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGAGGGTGACGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCTAAA-----------AGTGGATTAAATTGTAGAAAATTACTATTTCATGTATTTAAAAATGATCTGGAAAA
s HiC_scaffold_1 131249125 776 + 233722169 tattctttatgGTGAT-----TTTGTTAGTTACTTTGAGTATGAAGAAGTCACTCATACAGATGGTACAAATAAGATTATGCTATGTGAGGTACACTGCtgattgatcttttta---------aaatcaggaatagtGCTTAGCAGCTATTAC---TCCTCaagattttcaaacattttcaatAAAAGGGCCTTAGcttaataaaatttgattttcaatcCCCAGCTCTGATCTTTGAAACAAAGCTTGACTATGAGCTCTCTGCATTAAACCATCTATCTTCTTGAGAAAACAATGGAGACAGCTGGGTAAGATCTTTTTAACTCTGCTGATGTCTTTGTTTCTTAACTGCAAGTGTTCTTTGCAGTATCTG--GAATCATGATTCCAAGAAATGATGGCACTTTAT--CTTAGTAGTTTGGGACAATCCAGAGACAGGTAAAGTACAG------CATTTTCCAGTCAATTATCTCCATTTCTACTCCCAGAA----------------AAAATGGGCCCA---ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGttagaaatagaaaagtaaattttagtATACCATACACTAAAATACTTAATTGTAAACCAGAAAA

a score=10422
s chr3           144966203 244 + 160039680 GAGCCCAG-GAACTTACAGTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGAGGGTGACGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCTAAAAGTG
s HiC_scaffold_1 131301477 245 + 233722169 GGGCTCAGTGAACATACCGCCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGGTTTGTTGTCATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAATTG

a score=13112
s chr3           144966213 285 + 160039680 ACTTACAGTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAGGGAGAAGAAGGGTGGAGAGGGTGACGTCTCCATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCTA--AAAGTGGATTAA-ATTGTAGAAAATT-----ACTATTTCATGTATTTAAAAAT-GATCTGGAAA
s HiC_scaffold_1 131034836 294 + 233722169 ACTTACCTTCATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGGTGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAAGGTTAATatgataaaagattttaaaattatcttgtcCATTTAAAAATCTATCTGTAAA

a score=6127
s chr3           144966220 254 + 160039680 GTCATACTCCCAGACACATCAAGAACTAGGCACATAATTCTCTCACTGATCCTCAGCAG-GGAGAAGAAGGGTGGAGAGGGTGAC---GTCTC---CATGGGCGTGCTGCTGTTAAAATCCTCAGAAGTGCTGATTACTTCCCAAGTGCTTCTGTAATTGCACTTTTTATTATGTAGAGTTGGAGCCTCTCGATTATGGTTTTCCTTTTTACAGAATTCAGTCACCT-----AAAAGTGGATTAAATTGTAGAAAATTACTATTTC
s HiC_scaffold_1 131343060 265 + 233722169 GCCATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCC-ATCCTGGACAACAGAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGGGATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAAAAAGAGCAGAGTTCATCAGAGAATAACAGCATTTC

a score=26821
s chr3           144967949 1086 + 160039680 ATAGTTAACAATAATT--CTCTAGCTATTAATAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttagtgggtatcagtcaatgttcaatggactctacattaacatatttaatcctcaTGTCATACTTAATATCCATTATA---------------------------------TCTCTGGTAGAGCGCTTGCCTAGCAATGTGTAGTTTCTTACTCTTATTTCCTTCATCATCATCATGGTTATTTTTAAATTAATGATGTTAGACAAATCCTTTAATTAT-AGATATGGATACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGAAGCCTTTTCTGATTGAACTTTATCAGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTCATCGCACAGCTGCCCCCTTGGCATGCATAGACTCTATTCGTCCCCGTGATACCTGTGGAGCACCTGAAAATATGGAAGTGAATCCAATAGAAAACTTAGTCATT----TTTTTGAAAAGT----GGCCCTGCTCCCACTGAGCTTTGTGGCAAGATATTTGTTATGTAGCTCCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCACACACAGTGGAGCTCTCTGCTGGGATGAAA---GCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGTTGGCCTTGGAC---CAACTCTCTGTAGACACCTGGTTGACAGAACC-AGTGTACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACGTCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG-----------TGTGCTGTTCCATGGGAGA---GTCATAGCCAGCAGTGATCAGAACAGATACACCAGACTTTAGCCACAGCTCA---TCCCATTGGCTTGCAGTTCAAA-TCAGTAAGTGA
s HiC_scaffold_1 131161294 1091 + 233722169 ataattaacacaaaTCAGCATTAAC-GTTGGCTGACCATAATAACAAGAGATGATATTAGCTGAATGCTTATTGTATGCCAATCAATAATTAACAAATTCTATATCAATGTATTTAATCCTCATGTCAT-CTGGATGCATATTTCAAAATCAGGTAAAGTGGGGCTAGAGGTGTAACACTTTCGAGTAGCGTgcatgcctagca-tgtgcaaagtc-----cTGGATTAAATCACTAgcaccataaaataaaataaacaaataaaatcagataTATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACATACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTGAAAATATGTGA-------CAGTTAACTTTTTAGTCCttagtgcttttaaaaaatcataaattgttCTCTTGATGATACTT-Taccaaagtttttcttttat-gtgttcaTGTATTTCCCATGCTGATAGCAAAGTTTAAGAGTTGCAATCAAAGTAATTATCTATTTTTCAAGAAAGTATAATGTAGACATTTAGTTA-------------AAATCTATAGA-----TATACATGACTGAGTTTGCTGGTGGGGTTAAAGATGCTAT-------TCTCTTGCTTAGACATCTCTCCTGCTGAACTTATACTGGTGAATCACTGCAAGCACCTGGATGAGGAAACCTAGGGATCCATTTACTCTGGGTA-GCACCTTAGCTTGAAGTTTGCCATAGACTTCTTTCCAAAGAGATATC-----------TGTGTTTTGcttactca---------tttttattaaaaaggaaatgtgacTGTAAGCAAAGAGTGAAGTTCTATAAAAAATGAC-GTAGAATAAAGAATGATAGAGGCATTTCAGAAATGAATTATATTACCCAAAATTGGTAATAGGGGGTAGAGATTAGAGCAGATATGTTGGGATGTGGCTATATCTCATTTTTCCATTGGTTTCCAGTTCAAATTCAGAAAGTGA

a score=24436
s chr3           144967949 1086 + 160039680 ATAGTTAACAATAATT--CTCTAGCTATTAATAGAGCATAGTGTTAATATACAATAGAGGAtgaatacttagtgggtatcagtcaatgttcaatggactctacattaacatatttaatcctcaTGTCATACTTAATATCCATTATA--------------------------------TCTCTGGTAGAGCGCTTGCCTAGCAATGTGTAGTTTCTTACTCTTATTTCCTTCATCATCATCATGGTTATTTTTAAATTAATGATGTTAGACAAATCCTTTAATTAT-AGATATGGATACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGAAGCCTTTTCTGATTGAACTTTATCAGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTCATCGCACAGCTGCCCCCTTGGCATGCATAGACTCTATTCGTCCCCGTGATACCTGTGGAGCACCTGAAAATATGGAAGTGAATCCAATAGAAAACTTAGTCATT----TTTTTGAA-------AAGTGGCCCTGCTCCCACTGAGCTTTGTGGCAAGATATTTGTTATGTAGCTCCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCACACACAGTGGAGCTCTCTGCTGGGATGAAAGCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGTTGGCCTTGGAC---CAACTCTCTGTAGACACCTGGTTGACAGAACC-AGTGTACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACGTCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATGTGTGCTGTTCCATGGGAGAGTCATAG---CCA--------------GCAGTGATCAGAACAGATACACCAGACTTTAGCCACAGCTCA---TCCCATTGGCTTGCAGTTCAAATCAGTAAGTGA
s HiC_scaffold_1 131085962 1081 + 233722169 ataattaacacaaaTCAGCATTAAC-GTTGGCTGACCGTAATAACAAGAGATGTTATGAGTTGAGTGCTTATTGTATGCCAATCAATAATTAACAAATTCTATATCACTGTAATTAATCC-CATGTCAT-CtggatacatattttaaaatcaggtaaaGTGAGGCTAGAGGGTAACACTTTCGAGTAGCGTgcatgcctagca-tgtgcaa------agtcTTGGATTAATCACTAGcaccataaaatgaaataaaccaataaaatcagATATATGCTTTGATTATGAGTTTTGGAAGCAAGGATTGACATACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTCTAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTGAAAATATGTGA-------CAGTTAACTTTTTAGTCCttagtgcttttaaaaaatcataaattgttCTCTTCATGATGATATTT-TACCAGTGTTTCTTCTATGTG---TTCACGTACTTCCCATGCTGATAGCAAAGTTTAAGAGTTGCAATCAAAGCAATTACCTATTTTTCAAGAAAGTATAATGTAGACATTTAGTTAGAATCGATAGA------------------CATATATGACTGAGTTTGCTGGTGGCGTTAAAGAT----GCTACTTTCTTGCTTAGACATCTCTCCTGCTGAACTTATACTGGTGAATCACTGCAAGCACCTGGATGAGGAAACCTAGGGGTCCGTTTACCCTGGGTG-GCACCTTAGCTTGAAGTTCGCCATAGACTTCTTTGCAAAGAGATATC-----------tgtgttttgcttattta---------tttttattcaaaaggaAATGTGACTGTAAGCAAAGAGTGAACTTCTATAAAAAATGAC-GTAGAATAAAGAATGATAGA-----GTCATTTCAGAAATGAATTTTATTACCCAGAATTGGTAACGGGGTAGAGATTATAGCAAATATGTTGGGTTGTGGCTATATCTCATTTTTCCAATGGTTTCCAGTTCAGA-----AAGTGA

a score=20960
s chr3           144967984 964 + 160039680 ATAGTGTTAATATACAATAGAGGAtgaatacttagtgggtatcagtcaatgttcaatggactctacattaacatatttaatcctcaTGTCATAC-----------TTAATATCCATTATAT-------------------CTCTG-GTAGAGCGCTTGCCTAGCAATGTGTAGTTTCTTACTCTTATTTCCTTCATCATCATCATGGTTATTT----TTAAATTAATGATGTTAGACAAATCCTTTAATTATAGAT-ATGGATACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGAAGCCTTTTCTGATTGAACTTTATCAGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTCATCGCACAGCTGCCCCCTTGGCATGCATAGACTCTATTCGTCCCCGTGATACCTGTGGAGCACCTGAAAATA--TGGAAGTGAATCCAATAGAAAACTTAGTCATTTTTTTGAA------AAGTGGCCCTGCTCCCACTGAGCTTTGTGGCAAGATATTTGTTATGTAGCTCCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCACACACAGTGGAGCTCTCTGCTGGGATGAAAGCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGTTGGCCTTG----GACCAACTCTCTGTAGACACCTGGTTGACAGAACCAGTGTACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACGTCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG---------TGTGCTGTTCCATGGGA
s HiC_scaffold_1 131249986 969 + 233722169 ATGGTAATAGTAGGCAACATTAGTCAAGTGCCTACAATGTCTCAGACAGTGACTGaagaattttatattaatagaTTTAATGTTCCTGTGATCCAGATACAAATTTTCAAATCAGTCACGTTGGAGAAGAGGGTGTAACACTATGAGCACAATATATAACTAGCA-TGTGCAAG-----ACTGTGGTTTCAGTCACCAGCAccacaataaaagaaaatcaattcaaTAAAATCAGATGTGGCCTTTGATTATAAATTGCAGGAGCAAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTCTAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCTGAAAATACGTGGCAGTTATTCTTTGAGGCAacttagtaatatttttaaaaatcttaagtgGTTCTATTCTTGATGATGTTTATAGCAAGAAGTTTCATTTGTGtgttccatttgtttcctatacACATAACGAATTTTAAGAGTTCCAGTAAAAGCAATTTTTTATAGTACAAGAGCTTGATTTAGAAACATTTAAA----------------------------TGGCATACATGACAGAGTTCTCAGAAGTAATGGAACCT----GCCAGGCCCTTGTTTACATCTGTCTCCTGCTGGCCTTATGTTGGTGAATGCACTGCAGGCAGCTTGATGTGGGAACTTGTGAAAACATT-TTCTCTAGGTACCACATTATCTTGTTCTCTGTAGG---CTTCTCCAAATGTGATGAAGTGGAGCTACAAGTGTTTTGGTTATTCAAGGACTTTC---TTATCTAA-----AATGTGGCTAGAAGCAGATTGTGAGATGCTGTCACAAGGGACAGTAGAATAAAGAATGGTGGAGGCATTATAAATGTGC--TTCCATGAAA

a score=18564
s chr3           144967984 964 + 160039680 ATAGTGTTAATATACAATAGAGGAtgaatacttagtgggtatcagtcaatgttcaatggactctacattaacatatttaatcctcaTGT----------CATACTTAATATCCATTATATCTCTGGTAGAGCG---------------------CTTGCCTAGCAATGTGTAGTTTCTTACTCTTATTTCCTTCATCATCATCATGGTTA-------TTTTTAAATTAATGATGTTAGACAAATCCTTTAATTATAGATAT--GGATACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGAAGCCTTTTCTGATTGAACTTTATCAGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTCATCGCACAGCTGCCCCCTTGGCATGCATAGACTCTATTCGTCCCCGTGATACCTGTGGAGCACCTGAAAATA--TGGAAGTGAATCCAATAGAAAACTTAGTCATT-TTTTTGAA---------AAGTGGCCCTGCTCCCACTGAGCTTTGTGGCAAGATATTTGTTATGTAGCTCCCAGGACCTTCCTCCACTGCTGGCAAAGCTTAAGAGAGCCAATCAAAGTAATCATTCAATTTTCAAGAAACTGTAATGAAAATAAAAAAAGAAGAAGAAGAAAACAAAGCCAAAGGGGTATCACACACAGTGGAGCTCTCTGCTGGGATGAAAGCTATGGGTGGGTCTTTCCCTTAGACATTCCTGCAGTTGGCCTTG----GACCAACTCTCTGTAGACACCTGGTTGACAGAACCAGTGTACCAATTATTCTTGGTGTGCAGTGTGGTCTTCTTTTCCAGAAAGACGTCCTTGAAGAGTGGCATCACATAACTACATGTGCTTTGCCTAATCAAGGAGCATCATTTTATCCAGACGACAATGTGACTGAACTCAGAGAATGAGGGTCTGCCAAGAAAGGCAATGGAATAAAGAAGGATTGATG---------TGTGCTGTTCCATGGGA
s HiC_scaffold_1 131199638 969 + 233722169 ATGGTAATAGTAGGCAACATTAGTCAAGTGCTTACAATATTTCATACAGTGACTGAAGaattttatat-aatacatttaatCTTCCTGTGATCCagatacaaattttaaatcaGATATGT-TGGGGAAGAGGGTGTAACACTATGAACACAATACATGCCTAGCA-TATGCAAG-----ACTGTGGGTTCAGTCACCAGCaccacaataaaagaaaataatcaattaaataaaatcagatatGGCCTTTGATTATAAATCTCAGGAGCCAA-GATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTCTAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCTGAAAATACGTGACAGTTATTCTTTGAGGCAACTTAGTCATTATTACTTAATAAAATCTTAAGTGTTTCTATTCTTGATGATGTTTATAGCAAGGAGTTTCATTTGTGTGTTCCACTTGTTCCCTATGCACgtaatgaattttaagagttccAGTAAAAGCAATTTTTTA--TAGTAAAAGGCTGTGATT----TAGAA------------------ACATTTAAATGG----CATATATGACAGAGTTCTCAGAAGTAATGGAACCT----GCCAGGCCCTTGTTTACATCTGTCTCCTGCTGGCCTTATGTTGGTGAATGCTCTGTAGGCAGCTTGATGTGGGAACTTGGGAAAACATT-TTCTCTAGGTACTACATTATCTTGTTTTCTGTATG---CTTCTCCAAATGTGATAAGGTG---------GAGTTTTGATTATTCAAGGGCTTTC---TTATCTAAAAGA-AATGTGGCTGGAAGCAGATTGTGAGATGCTGTCATAAGGGACAGTAGAATAAAGAGTGGTGGAGGCATTATAAATGTGC--TTCCATGAAA

a score=13362
s chr3           144968163 297 + 160039680 TTTTTAAATTAATGATGTTAGACAAATCCTTTAATTATAGAT-ATGGATACAGTGACTGGTATACTTACAGAATCGATACTTTGCATGAACATTATGGAAGCCTTTTCTGATTGAACTTTATCAGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTCATCGCACAGCTGCCCCCTTGGCATGCATAGACTCTATTCGTCCCCGTGATACCTGTGGAGCACCTGAAAATA--TGGAAGTGAATCCAATAGAAAACTTAGTCATTTTTTTGAAAA
s HiC_scaffold_1 131035323 295 + 233722169 TTTCCTAAGTAGATATGTTAAAAACAT-----GATTACAAATTCTGAAAACAAAGATTGGCATACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTCTAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCTGAAAATATGTGACAGTTAATCATTGAGGCAACttaatcattaatttaaaaa

a score=6614
s chr3           144968225 187 + 160039680 ACTTACAGAATCGATACTTTGCATGAACATTATGGAAGCCTTTTCTGATTGAACTTTATCAGGGAAGAATTGACAATCCTTTTCATATAACTTTGTGGTGGAATTAGTTCTGCACCTTCTCATCGCACAGCTGCCCCCTTGGCATGCAT---AGACTCTATTCGTCCCCGTGATACCTGTGGAGCACCTG
s HiC_scaffold_1 130991900 190 + 233722169 ACTTACTGAATCGAGGCTTTGCATGAACATTATCGAGTCTCTTGCGGTCTGGGATTTGTCTGGGATAAATGTGCATTTTGCTTCGTAAAGTCCTGTCTTGGAGTCACGTCTACACGGCCTTGTTATACAGCTGCCTCCCTTGCATTCATTGAAAACCACATTCATACCAGTAATGTGAGTGGAGCATCTG

a score=9914
s chr3           144969037 443 + 160039680 TCTTAATGAGTTCTGGCAGGTCTGGGAGAGATGTGTAAATAAAAAGTG--TCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGCATAAAATAGGCTTGTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATT-GAAAGGACTATAGAGCAGTTAAA-----------AGCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTAAATACATAATCACAATTCAATTGGTAAAATTTATATCTCAAAAAGTCC
s HiC_scaffold_1 131037135 415 + 233722169 TCTAAATGACTTTTGGCAGCC----AAAAAACCAgaacatgaaaaatacatttaattgtcTGCCAAATGCTC----TTGAAGTTATGTGTATCTT-----AAGGAGacaatgtattt--------tttcttaaaa-------aatatttttttgtgacATGGAGTCTGTTATCTccactggaataaaa-ataaattatcatcatttgaaaggagtcagaggaagaaaaataagaccTGTTacacagtgatcttttaaaaaaatttag--------tcatGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAGGGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGAGA-----AGACTTaattcaaaggacaaaatttatcTGTTAAATATTTC

a score=14670
s chr3           144969041 1067 + 160039680 AATGAGTTCTGGCAGGTCTGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGCATAAAATAGGCTTGTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCAT--------------TGAAAGGACTATAGAG-CAGTTAAAAGCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTAAATACATAATCACAATTCAATTGGTAAAATTTATATCTCAAAAAGTCCCAggccaccgtgatggctcagtgggcaaaagtgcatgccaccaaacctgacaacctgagttcagtccttgaactccctgtggaaggggcaagaactgactctcaagttgtcctctgcccaccacacCACCCCTGAagagagagggagagagaaagagagagatacagagagacagagaaaggaaagagagaggagagaggagatagaagagggaaagagaaaagagaggggaagagaaagacagtagagagagaTTACATTTGGGTTTAGGTTTT-TGTAACTCTTAAAGTTTATAT-TTTGTTAGTAAAAGGGCTT-TTATATTTGATGGTAC-TCATTGC----TGTACCATTTTTTTATTCCACAG---CATGTCAAATCAATGAAACAT-TATGGAGCATATGCCACAGTCACAGTAAACTAGGATTTGATTTTCAGTTCTTGGCGTGTCAAAGGTTTT-----------tagtttatggcttgccaagtaccaaccctgtcaacagcctaatcagatataca-gaactctgctgtatagatattttgagggtgcagctttagggaggaaaaaactagactaaaaatgctcctgaaggagttgatattgaag-aaagatatagatatgctATTATAGATTATGTAGGTT
s HiC_scaffold_1 131251600  844 + 233722169 AGTGATTTCTGTCAGCTATGTGTCATATGTG------AAATATGTCAAATTGTCAA-CAAATGCTTCCCACTGcagttatgtatattttaaatggaaaactaGCTGCATTAagataaaatttctagaaaaatg---agAGCAATTTTGTGATATTGCATCTATCCTCTGCTTTGGGGCACAG-AGAAATGATTATCATCTATAATAAATCagtgtaaagagaataaaatcaattaaaagtcTGAGGTTATATAAGAAAATTTAAGCA----GTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaaca-tttcaaacatgTAA-CAAAATTCAAGTGACAAGTTTCTTATCTGAAAAATTTGAAG------ATGATCTTTCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAAAGG----------------------------------------------ATTTGCATTTAGGTTTTCCATCACCCCTGATATTTATATATCTGTTTATAAAAGAACCTATCAcattaaataacatatttttacCACATATATTATGTTTTTACTCCAGGGGAACATAGTGAATCAGTGAGTCATGTGTGGAATATAACCTATGAACAGAATGAACTAGGATTCCTCCTTCTATTCTAGAAGATAGAAAGGTCTTAGACATTACAATGGTTTATAGATCTCCAAACAAGAACCCTATCAGTAACATAATTGGATACACACTGATTCTATTGTTTTAAGAT-----GGATGGACCt------aggaaaaattt--tctaaaaatgttccTGACAAGGTTGGGAATGAAGCAAAAATTCAGAAACATTCTTGCAGAAAATACAGGct

a score=14869
s chr3           144969041 1067 + 160039680 AATGAGTTCTGGCAGGTCTGGGAGAGATGTGTAAATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGCATAAAATAGGCTTGTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATTGAAAGGAC-----TATAGAGCAGTTAAAA--------GCCAGAGGTCATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTAAATACATAATCACAATTCAATTGGTAAAATTTATATCTCAAAAAGTCCCAggccaccgtgatggctcagtgggcaaaagtgcatgccaccaaacctgacaacctgagttcagtccttgaactccctgtggaaggggcaagaactgactctcaagttgtcctctgcccaccacacCACCCCTGAagagagagggagagagaaagagagagatacagagagacagagaaaggaaagagagaggagagaggagatagaagagggaaagagaaaagagaggggaagagaaagacagtagagagagaTTACATTTGGGTTTAGGTTTT-TGTAACTCTTAAAGTTTATAT-TTTGTTAGTAAAAGGGCTT-TTATATTTGATGGTAC-TCATTGC----TGTACCATTTTTTTATTCCACAG---CATGTCAAATCAATGAAACA-TTATGGAGCATATGCCACAGTCACAGTAAACTAGGATTTGATTTTCAGTTCTTGGCGTGTCAAAGGTTTT-----------tagtttatggcttgccaagtaccaaccctgtcaacagcctaatcagatataca-gaactctgctgtatagatattttgagggtgcagctttagggaggaaaaaactagactaaaaatgctcctgaaggagttgatattgaag-aaagatatagatatgctATTATAGATTATGTAGGTT
s HiC_scaffold_1 131201258  844 + 233722169 AGTGAGTTCTAGCAGCTATGGTAGGCAGGTGTTAA----ATGTGTCAAATTGTCAA-CAAATGCTTCCCACTGCAGTTATGTATATTTG-AAATGGAAAACTAGCTGCATTAAGATAAACTTTCTAGAAAAAT--GAGAGCAATTTTGTGATATTGCATCTATCCTCTGCTTTGGGGCACAGCG-AAATGATTGTCATTTATAGCAAATCagtgtaaagagaataaaatcaactAAGTCTGAGGTTATCTAAGGAAATTTAAGCA----GTTGTACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaaca-tttcaaacatgTAA-CAAAATTCAAGTGACAAGTTTCTTATCTGAAAAATTTGAAG------ATGATCTTTCAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAAAAGG----------------------------------------------ATTTGCATTTAGGTTTTCCATCACCCCTGATATTTATATATCTGTTTATAAAAGAACCTATTGcattaaataacatatttttacCACATATATTATGTTTTTACTCCATGGGAACATATTGAATCAGTAAGTCATTTGTGGAATATAACCTATGAACAGAATGAACTAGGATTCCTCCTTCTATTCTAGAAGATAGAAAGGTCTTAGATATTACAATGGTTCATAGATCTCCAAACAAGAACCCTATCAGTTACATAATTTGATACACACTGATTCTATTGTTTTAAGAT-----GGATGGACCt------aggaaaaattt--tctaaaaatgttccTGACAAGGTTGGGAATGAAGCAAAAATTCAGAAACATTCTTGCAGATAATATAGGct

a score=10040
s chr3           144969075 409 + 160039680 ATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGCATAAAATAGGCTT--GTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATT------GAAAGGACTATAGAGCAGTTAAAAGCCAGAGGTCAT-TTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTAAATACATAATCACAATTCAATTGGTAAAATTTAT-----ATCTCAAAAAGTCCCAgg
s HiC_scaffold_1 131087953 384 + 233722169 ACAGGATGTGTCAAATTGCCAAAAAAAT--TTGCCATTGATATtatgtgcattta-aaataaacagcCATGCACTTTaagacaatt----ttgaaaaaaagtaaaaccagtTTTTGTGATATTGCATCTACCATCTGCTTTGGGG------ATAAGTGATTATCATTCATAATAACAGGTTAATAAAA----TGAAAGCCTGATGTTATGTTAAGAAAATGTAAGTA----GCCTTGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaaaca-tttcaaaca-----------------tgataaaatttctcaaaaatcttaAGATGTTTCAGG

a score=11096
s chr3           144969075 410 + 160039680 ATAAAAAGTGTCAAAATGCCAAACAAGTGATTCACATTGAGGCTATGTATATTTTTGCACAGATAGTCATTGTCTTCAAGGAGAATGCCCTAAAATAAGCATAAAATAGGCTT--GTGATATTGCATCTATTATCTGCCTTCAAGCAAAATATGGATGCTTGTCATTGAAAGGACTATAGAGCAGT----TAAAAGCCAGAGGTCAT-TTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGATTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTAAATACATAATCACAATTCAATTGGTAAAATTTATATCTCAAAAAGTCCCAggc
s HiC_scaffold_1 131163192 392 + 233722169 ATAGGATGTGTCAAATTGCCAGA-AAACATTTGCCAGTGAAGTtatgtgcatttt-aaataaacaaccatgtactttaagaaaaaattcctaaaaaag---TAAAACCAGTTTTTGTGATATTGCATCTACCATCTGCTTTGGGACTGG---TAAGTGATTATCATTCATAATA--ACAGGTTAATGAAATGAAAGCCTGATGTTACGTTAAGAAAATGTAAGTA----GCCTTGCCTTGTGGCTTCAAGTTTATTTAACTCGCTCCTGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaaca-tttcaaacatgTGATAAAAATTC------TCAA----AGATCTTAAGATGTTTCAGGC

a score=5333
s chr3           144969273 189 + 160039680 CATTTAAAGGTACTTAGGGGTCATGCCATGCCTTGTTGCTTCGA---TTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTAAATACATAATCACAATTCAATTGGTAAAAT
s HiC_scaffold_1 131308753 185 + 233722169 CAATTTAGAATAGTTTGAGAAGATGAAATACCTTACGGCTTGAGGTCTTCCCCTGGATAA------GTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACA-TTTCGGTTACCTGAGTAAAATAAGAATGGTAAGAT

a score=6304
s chr3           144969300 132 + 160039680 ATGCCTTGTTGCTTCGAT-----TTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGTAAGGCAATGTTTTTA
s HiC_scaffold_1 130994007 132 + 233722169 ATACCTTGTTGCTTCAATAGTGttctttctggaaaaa-----taaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGAGAACATTGTCA

a score=6060
s chr3           144969303 114 + 160039680 CCTTGTTGCTTCGATTTTCTTTGATGAAGCGCTGTAGAATGGCTGGTCTTCATTGTATTCATCAAATACTCCCCAGCGAAGGTGGGCCCATTCATGGACCAACACTTTTCCTGT
s HiC_scaffold_1 131346675 114 + 233722169 ccttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGT

a score=27733
s chr3           144969616 1467 + 160039680 gagagagggagagagaaagagagagatacagagagacagagaaaggaaagagagaggagagaggagatagaagagggaaagagaaaagagaggggaagagaaagacagtagagagagaTTACATTTGGGTTTAGGTTTTTGTAACTCTTAAAGTTTATATTTTGTTAGTAAAAGGGCTTTTATATTTGATGGTACTC-ATTGCTGTACCATTTTTTTAT-----TCCACA---GCATGTCAAATCAATGA----AACATT----ATGGAGCATATGCCACAGTCACAGTAAACT--AGGATTTGATTTTCAGTTCTTGGCGTGT-----CAAAGGTTTTtagtttatggcttgccaagtaccaaccctgtcaacagcctaatcagatatacagaactctgctgt--atagatattttgaggg-----tgcagctttaggga-------------ggaaaaaactaga----------ctaaaa---atgctcctgaaggagttgatattgaagaaagatatagatatgctATTATAGATTATGTAGG------TTATATTGGCTACTGCATAAAGATTTTGGCAAATTTTGAGAAAATTCAAATG---------------------GTTTGGAATAAGCAC-CATGAAAtacgt----cacttgtttaatgccacaaagct-----aatagaggaatcaagatttggaaccaagtatttctgttccaTTCTGATTGTT--TAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCCCCACCTGAATCTCCATATTCATCTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAA-AGACAGTAATTA----GAAAAACTCTGAATCAAT-AACTGTG--------TAGCAAAGCTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTAGAGGAAAAT--TTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATGAACA--TGAGAATGGAGTCATG------TCTCAGGTGCACTTCTCTGGTGAACCCTGTTAAGCTGTTACTACAAAAGGAGCCATGCATCAGGCTCATTCCTCAGCAGGCTCTGCCCATCCTT-----CTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCCGAAAAGGCTT----CTGGGTCTCCATCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTTATATAGCTATATACCTGGAGTTTAGAGTCATT--TATTTGACTCTAAATTACAGTCAATATTT
s HiC_scaffold_1 131040230 1480 + 233722169 gagaaagagagagagagtgagtgtgtgtgtgagagagagagaaa---aagagagag-agaga--------aagagagagagaga---gagagagagagagagagagag-agagagagaatgaat----gctGGGGTATGTG-AGTTCGTGAAAGTTTTCTTTGAATAGTGACA------TTTGAGTTGATCCTACTTTACCAATGATTCAGATTTTTAAGATAATACACATTAGCTCCTTGAACAAATGATCTTAACATTTAGAATttaatacatgaaatatttttaataggttCAAGTAATCAGTTATCATATTTTCACTTATGTAACCAAATGGTTTAA----ATGGTC------ATATCAGC------AACAGCCTA--CAAGTGTT----ACTTTGCAGTCTATAACTAGCGTCATGGCTCTTTCCATCTTTCTGCACATCTGATCAACTGTGGAAAGctagaaaatgaaaatctaaaacaTATGCTCTCAGAAAAGGTGATATTTCTGTAATCTGTTAGAATTCC--CATAGATACTACAGTGTCTATTTACATGAGTGTCTGTTTACATAGGGTTGTCTGCTTTAAGATAAACACAAGGTAGAAACCACTGTGTTCCTGAGTTTGATGGGAACATGCATAAAAAGGGTAGCCTACTTGTTTAAGATCACACAGCCTGATAAGCAGAAGATTCAGGATTTAAACCTATGTACTTTGGCTGAAATGCATTTACTCTTAACTGGGAAGAGAGCTATTTGCTGCGAG-ATGAAATGTTTTAATCAAATTTCCTACCTGATGGTCcgtattcattttgtttctttcccagTACAAAGCCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGCCTGGTATAAGGTTCATCTTGGCCTGGGAGGGTTGGTGGTGCAATTATAATATCAGCCTGAGAGTGTTGGAAAAGATTGTGAAAACATCAGCATTGGACATGGACAGCATTTAGTCTGGAAAACTCTGAAATGATGAGCTAAGGTTGGCATTAGCAGATGtagaaagca-----------------------ttttaaagaaaagtcatTGACACTTACATGTTGGTAGCTCTCATATTTTGGCCTCCTGtattgtgtgttttctttccaattcttaggaattaatatagacacatttttgaaaaaaaatctcttttctgtGGCTTCAAACAGGTAAGTAGATGCTGTTGTCACCATGTCCTATTATCAAAGGGAAACAG-TATGTGAAAACAATCAAGTGAGAATGGACTAAAGGTATAATCTCAG--ACATTTT---------CCATCTTCAGacattaaaaccaaaaaaaaaaaaaa--agg---actgatgAGCAGGGTCTCTCTATCCATGGTCACAGCTCTATTAGTTGTCAATTCCAAATTCC----------------AAATGCTTCATCCTGTGCTTTGAAAATCATGCACCAC-TTATATCAAAAGCCAAATGCCTGG---------AAATTGTCTAGAACaataaaatacatagaatttAGACTCATTAAGACTTGATTCTAACCCTTAGTTAATATTT

a score=28820
s chr3           144970086 1387 + 160039680 gctATTATAGATTATGTAGGTTATATTGGCTACTGCATAAAGATTTTGGCAAATTTTGAGAA------AATTCAAAT--GGTTTGGAATAAGCACC-ATGAAAtacgtcacttgtttaatgcc-acaaagctaata----gaggaatcaagatttggaaccaagtatttctgttcc---aTTCTGATTGTTTAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCCCCACCTGAATCTCCATATTCATCTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAAAGACAGTAATTAG----AAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTAGAGGAAAATTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCT-CCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTG-AAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATGAACA--TGAGAATGGAGTCATGTCTCAGGTGCACTTCTCTGGTGAACCCTGTTAAGCTGTTACTACAAAAGGAGCCATGCATCAGGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCC--CCTCATCA-GCACCCGAAAAGGCTTCTGGGTCTCCAT-CATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTTATATAGCTATATACCTGGAGTTTAGAGTCATTTATTTGACT-CTAAATTACAGTCAATATTTGT--GTGAACACTTTTTGTTTGGCTTATATAGTG-TCTGAAGCCTGGTTACCTTAC------------------------------------------------------------------CCTTAGTAGACTAAATACACTCTTAATTTC------AAGAAA--TGAACCAAAACCAGCTCTAGCAAATGCAAGGTAAGGAGAATAGCCCACGAGAGTTGATATCAGGGTGGGGCTTTATTTCTGTA---TTCTTG--GAAGAGGTGGGAAGGTTGGATTCTTG--GAGGGCAAGGTAATAGAAATTCCATAGCATATGTAAAAAAATGATCACAGAACTGTTACTCTGCCTTCAATGTGAAAATACACATTCTCTCCCAGTGTCTTGAGTCCAAAGCTATCGCAATTTATTAGAGGATTTCTCTCTTCACATAGTCAATGTCTAATAAAGAGAAGCAG--GGATGAAAAGCAA
s HiC_scaffold_1 131121423 1429 + 233722169 GCTATCATAGTATATTTACAT-AGATTATCTAGTgca-aaaaatt---gcaaaatgtAGAAACTCCTCAATTCACATTTGATTGGGAATGAGCTTTGATATAGAAGATCACTTCTTTAGTTCCCACAAAACTGGTATGTAGAAGAGATAGGATTATAACCTGAG-GTCTCTGTATCCAAAGTCTTCTCACTTAATCTGGGTCAGATCTGCTTG--ATAAAAATTAGATA-TTTGACAAAATTTCCTACCTAATGGTccatattcattttcttttttgcccaGTACAAAGTCAGGGGTGAAatgaatatattctgctttttctcCACCTTCTGTGAACTGCCTTGTATAAGGTTCATCTCTGTCAGGGAGGCTCGGTGGTGCAACTATCACATCAGCCTGAGAGTGTTGGAAAAGGTTGTTAAGCATTG-GGaacatgaatgaaaatatttagttAAAATATATCTGAAACAAAAATTT----GCAAAGGTGG-GAGCAtcagaaaatttcctttt-----ttgctaGAGAAGATTTTGGCACTTACATGTTTGTAGCTCTCATGTTCTGGCCTCCCTGTATTCAGGATTTGCTGCGCAAGTCTCAGGAATCAATATAGacacagttttgaaaaaaaaatcttttttctgtgGCTTCCAAGAGATAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAG-TATGTGAAAACAACCAAGTGAGAGTGGAATAAGAGAGGAGTGGTTCTTTTCGggaattttctgtttcatttttaattcaaaagcAACTG---ATAATGT----------GCAG--TTTGCCCACTGTTCTAGC----------TCAGTCCTGAGCTACTACTTCATCCTGCATCATGAATTGCTTATCAATCTTCTTGCCCCTTACTTCTAAAAGCAAC----AGTCTATGCCTGGTTTTTGGAGAAGCTGATTAATACAAACACATATATGAACTGTGAAGTCATTTCCTTGTTTCCCAGGGTGCTGTTAGCACTTTCCGGGTAACAAATCTTACTTGATTCTTGTATTGCTCTGAAATTCAGTTTCTTTATGTCTCCATGGATCATTGCTGCaatatttgattttatgtttgGCATAAAGAAAGAATGTGGTCTGCACATCAGTAGTCCTAACACTGATATCATTTCTGATAGAAGAAATCTGGGTGAAGAAGAGCTTTAGCAGATGCAGGCTGAAGA----AGACTGTGGGAATTAGTGTTAGAAGGGGTTTTTCTTTCGCTACTTCTCTTGCCAGAGAGGTACTTGGGCTGGGAAAATGATGAGGGC-AGTTATGGAAAAGTGCTTAGAAGAAATACAACTTTGATCACAGAACTGTTGGTTTGTCACCTAGCAAAAAATAATC-----------------TGAACCTAAATTTACCATGATAAATAAGAAGTTGCCCCTCTTTAA--AGCTTAGCATTCATTGGGAGAAATAGTTGggtgaagagcaa

a score=30268
s chr3           144970087 1469 + 160039680 ctATTATAGATTATGTAGGTTATATTGGCTACTGCATAAAGATTTTGGCAAATTTTGAGAA------AATTCAAAT--GGTTTGGAATAAGCACC-ATGAAAtacgtcacttgtttaatgcc-acaaagctaata----gaggaatcaagatttggaaccaagtatttctgttcc---aTTCTGATTGTTTAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCCCCACCTGAATCTCCATATTCATCTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAAAGACA----GTAATTAGAAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTAGAGGAAAATTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATGAACA--TGAGAATGGAGTCATGTCTCAGGTGCACTTCTCTGGTGAACCCTGTTAAGCTGTTACTACAAAAGGAGCCATGCATCAGGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCC--CCTCATCA-GCACCCGAAAAGGCTTCTGGGTCTCCAT-CATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTTATATAGCTATATACCTGGAGTTTAGAGTCATTTATTTGACT-CTAAATTACAGTCAATATTTGT--GTGAACACTTTTTGTTTGGCTTATATAGTG-TCTGAAGCCTGGTTACCTTAC------------------------------------------------------------------CCTTAGTAGACTAAATACACTCTTAATTTC------AAGAAA--TGAACCAAAACCAGCTCTAGCAAATGCAAGGTAAGGAGAATAGCCCACGAGAGTTGATATCAGGGTGGGGCTTTATTTCTGTA---TTCTTG--GAAGAGGTGGGAAGGTTGGATTCTTG--GAGGGCAAGGTAATAGAAATTCCATAGCATATGTAAAAAAATGATCACAGAACTGTTACTCTGCCTTCAATGTGAAAATACACATTCTCTCCCAGTGTCTTGAGTCCAAAGCTATCGCAATTTATTAGAGGATTTCTCTCTTCACATAGTCAATGTCTAATAAAGAGAAGCAG--GGATGAAAAGC--AATTAAGGTTCCTTATA----------ACCAGGC---TTCTCAGGGGGAAG-----TAAAACATaaacaaat-ataaaataaaataaaataaaaGCAAAAATAA
s HiC_scaffold_1 131255252 1530 + 233722169 ctatcaTAGTATATTTACAT-AGATTATCTACTTCA-AAAAATT---GCAAAATGTAAAAACTCCTCAATTCATATTTGATTGGGAATGAGCTTTGATATAGAAGATCACTTCTTTAGTCCCCACAAAACTGGTATGTAGAAGAGCTAGGATT-ATAACTTGGGGTCTCTGTATCCAAAGTCGTCTCACTTAATCTGGGTCAGACCTGCTTGATAAAAATTAGACAT---TTGACAAAATTTCTTACCTGATGGTccatattcattttcttttttgcccaGTACAAAATCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGTCTTGTATAAGGTTCATCTCTGTTGGGGAGGGTCGGTGGTGCCACTATCACATCAGCCTGAGGGTGTTGGAAAAGGTTGTTAA-ACATTGAGCgcagaaatgaaaatgtatagTCAGAATGAATCTGAAACAA-----ACCTTGAAAAACTTGGGAGCATCAGAAAA-----TTTCCCTTTTTGCTAGAGAAGATTTTGGCACTTACGTGTTTGTAGCTCTCATGTTTTGGCCTCTTGTATTCAGGATTTGCATCCCAAGTCTCAGGAATCAATATAGatacagttttgaaaaaaaatcttttttctgtgGCTTCAAAGAGGTAAGTAGATGCTGTGGACACCATGTCCTGTTATCAAAGGGAAAAAG-TATGTGAAAACAACCAAGTGAGAGTGGAATAAGAGAGGAGTGGTTCTTTTCGggaattttctgtttcatttttaattcaaaagcAACTG---ATAATG----------AGCAG--TTTGTCCACTGTTCAAGC----------TCAGTCCTGAGCTACTACTTCATCCTGCATTCTGAATGGCTTATCAATCTTATTACCCCTTACTTCTAAAAGCAAC---AGAC-TATGCCTGGTTTTTGGAGAAGCTGATTAATACAAACACATATATGAACTGTGGAGTCATTTCCTTGCTTCCCAGGGTGCTGTTAGCACTTTCCGGGTAACAAATCTTACTCGATTTTTGTATTGCTCTGAAATTCAGTTTCTTTATGTCTCCATGAATTATTGCtgcattatttgattttatgtttgGCATAAAGAAAGAATGTGGTCTGCACATCAGTAGTCCTAACACTGATATCATTTCTGATAGAAGAAATCTGGGTGAAGAAGAGCTTTAGCAGATGCAGGCTGAAGA----AGACTGTGGGAATTAGTGTTAGAAGGGGTTTTTCTTTCGCTACTTCTCTTGCCAGAGAGGTACTTGGGCTGGGAAAATGATGAGGGC-AGTTATGGAAAAGTGCTTAGAAGAAATACAACTTTGATCACAGAACTGTTGGTTTGTCACCTAGCAAAAAATAATC-----------------TGAACCTAAATTTACCATGATAAATAAGAAGTTGCCCCTCTTTAA--AGCTTAGCATTCATTGGGAGAAATAGTTGggtgaagagcaaaataaaagatatataaaaagagTAGGGATCAGGATTGTTCTCAGAGGGAAGGTGATTAAGACATGGAGGGATGatagaggaagggaagagataaGGAATGAGAA

a score=25468
s chr3           144970180 944 + 160039680 tacgtcacttgtttaatgc--cacaaagctaatagaggaa---tcaagatttggaaccaagtatttctgttcc---aTTCTGATTGTTTAATA-GAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCCCCACCTGAATCTCCATATTCATCTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAAAGACAGTAATT----AGAAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTAGAGGAAAATTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAAT---GAACATGAGAATGGAGTCATG------------TCTCAGGTGCACTTCTCTGGTGAACCCTGTTAAGCTGTTACTACAAAAGGAGCCATGCATCAGGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCCGAAAAGGCTTCTGGGTCTCCA-TCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTTATATAGC------TATATACCTGGAGTTTAGAGTCATTTATTTGACTCTAAATTACAGTCAATATTTGTGTGAA-CACTTTTTGTTTG-----GCTTATATAGTGTCTGAAGCC
s HiC_scaffold_1 131090829 917 + 233722169 TAGATTACCTCCTCAATGTTGCACATAACTAATATACAGAAGGGCAAGAATTTGAGCCTAGGGTCTCTGGCTCCAGAGCCCGCTTATTTAATCTGGAAACACATTTGCTTGTTGAAAA--TTAGATATTTGGTGCAAATTTCCTACCTAATGGTCCATATTCAGCTTGTTTTTTTCCCAGAACAACATCAGGAGTCAAATGAATGTATTCTGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAGAAGAGCAGGAACCCATCAAGAGGAGAAATGGTGATGTTTACTGAGACTAACTCTGCAACAATC----TATGGTCTAAGTATGAAGATTCAGAATATATTCCTTT-----CTGTTGGAGACGAATTTGAGACTTACATGTTTGTAGCTCTCGTATTTTGGCCTTGTGTATGCAGGATCTTCATTCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATAATCAAAGGGAAACAG-TATGTGAGGATTGGAAGAGTAAGAGTGGACTCATGAGCACTGCTTTATGTCAGGT--ATTTCT--------CACTGTTA----GTTAACACAAAAGCAACTGAGCTAGGAGTT-----------GGGTCTTGCACATAATT-----TCGGCTCCTACCACTCCAT-----------CCTGCAGCATAAAAATCTCTTCAGTCTTTAGTCCTCCTACCACAACAGGTGACT----GTTTCTGCACAGTGATTAGAAGAGTTGGTGGATATGATTATGAATATGTAAATGGACTTTAGAGTCATTCACTTGGCTCT-----------GGTAGTGGTATTAAGCACTTTCTGTATGTTGTAGCTTTTGACATAACTGAagcc

a score=25685
s chr3           144970180 919 + 160039680 tacgtcacttgtttaatgc--cacaaagctaatagaggaa---tcaagatttggaaccaagtatttctgttcc---aTTCTGATTGTTTAATA-GAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCCCCACCTGAATCTCCATATTCATCTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAAAGACAGTAATTAGAAA----AACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTAGAGGAAAATTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAGATAGGTAAAAATG--AACATGAGAATGGAGTCATGTCTCAGGTGCACTTCTCTG-GTGAACCCTGTTAAGCTGTTACTA---CAAAAGGAGCCATGCATCAGGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCCGAAAAGGCTTCTGGGTCTCCA-TCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTTATATAGCTATA------TACCTGGAGTTTAGAGTCATTTATTTGACTCTAAATTACAGTCAATATTTGTGTGAACACTTTTTG
s HiC_scaffold_1 131166067 883 + 233722169 TAGATTACCTCCTCAATGTTGCACATAACTAATATACAGAAGGGCAAGAATTTGAGCCTAGGGTCTCTGGCTCCAGAGCCCGCTTATTTAATCTGGAAACACATTTGCTTGTTGAAAA--TTAGATATTTGGTGCAAATTTCCTACCTAATGGTCCATATTCATCTTGTTTTTTGCCCAGAACAACATCAGGAGTCAAATGAATGTATTCCGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGGTGGTGCAACTATAACATCAGCCTGAAAATGGTGAAAAAGAGCACGAACCCATCAAGAGGAGAAATGGTGATGTTTAGTGAGACTAACTCTGCAACAATC----TATGGTCTAAGTATGAAGCTTCAGAATATATTCCTTT-----CCATTGGAAACAAATTTGACACTTACATGTTCGTAGCTCTCATATTTTGGCCTTGTGTATTCAGAATTTTTCTGCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATTATCAAAGGGAAACAG-TATGTGAGGATGGAAGAGTAAGCGTGGAGTCAT-------GAACACTGCTTTATGTCAGGCATTTCTCACTGTTAGTAACGCAAAAGCAACTGAGCTAGGAGTT-----------GGGTCTTGCACATAATT-----TCGGCTCCTTCCACTC------------CATCTGCAGCATGAAAACCTCTTCAGTCTTTAGTCTTCCTACCACAACAGGTGACT----GTTTCTGCACAGTGATTAGAAGAGTTGGTGGATAtgattataaatatgtaaatgaacTTTAGAGTCATTTACTTGGCTCT-----------AGTAGTGGTATTAGCACTTTCTG

a score=30781
s chr3           144970184 1245 + 160039680 tcacttgtttaatgcc-acaaagctaata----gaggaatcaagatttggaaccaagtatttctgttcc---aTTCTGATTGTTTAATAGAGTATAGAGTTACGTGTCACAAACATGCAATGCTTTAACCAAATTCCCCACCTGAATCTCCATATTCATCTTGTTTTCTCCCCAGTACAAAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACACTTGAAGAACAGAAAAGACAG----TAATTAGAAAAACTCTGAATCAATAACTGTGTAGCAAAGCTAGCAAGCACCAGAAAATACTTTTTTTGTTGTTGTTAGAGGAAAATTTGATACTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTATTATCAAAGGGAAATAG-ATAGGTAAAAATGAACATGAGAATGGAGTCATGTCTCAGGTG-CACTTCTCTGGTGAA-----CCCTGTTAAGCTGTTACTACAAAAG-----GAGCCATGCATCAGGCTCATTCCTCAGCAGGCTCTGCCCATCCTTCTAACCTGACCTCTGTCAATCCATAACTCCCCTCATCAGCACCCGAAAAGGCTTCTGGGTCTCCA-TCATCTCACCTCACAAGACAGCTTGAGGCATGTACTTGGTGATTACAATAATTGATTTATATAGCTATATACCTGGAGTTTAGAGTCATTTATTTGACTCTAAATTACAGTCAATATTTGTGTGAACACTTTTTGTTTGGCTTATATAGTG-TCTGAAGCCTGGTTACCTTACC-CTTAGTAGACTA-----AATACACTCTTA-------ATTTCAAGAAATGAACCAAAA-------------------------------------------------------------CCAGC----------TCTAGCAAATGCAAGGTAAGGAGAATAGCCCACGAGAGTTGATATCAGGGTGGGGCTTTATTTC--TGTATTCTTGGAAGAGGTGGGAAGGTTGGATTCTTGGAGGGCAAGGTAATAG-AAATTCCATAGCATATGTAAAAAAATGATCACAGAACTGTTACTCTGCCTTCAATGTGAAAATACACATTCTCTCCCAGTGTCTTGAGTCCAAAGCTATCGCAATTTATTAGAGGA----TTTCTCTCTT
s HiC_scaffold_1 131205008 1285 + 233722169 TCACTTCTTTAGTTCCCACAAAACTGATATGCAGAAGAGATATGATT-ATAACCTGGGGTCTCTGTATCCAAAGTCTTCTCACTTAATCTGAGTCAGACCTGCTTGATAAAAATTAGACAT---TTGACAAAATTTCCTACCTGATGGTccatattcattttctttttttcccagtacaAAGTCAGGGGTGAAATGAATGTATTCTGCTTTTTTCCCACATTCTGTGAACTGTCTTGTATAAGGTTCATCTCTGTTGGGGAGGGTCGGTGGTGCCACTATCACATCAGCCTGAAGGTGTTGGAAAAGGTTGTTAA-ACATCGAGaacatgaatgaaaatatttacttaaagtGAATCTGAAACAATAAATCTGTGGCAAAACTTGAGAGTATCAGAAAA-ATTGTTTTT----TCGCTAGAGAAGATTTTGGCACTTACGTGTTTGTAGGTCTCATGTTTTGGCCTCCTGTATTCAGAATATGCTTTCCAAGTCTCAGGAATCAATATGGacacagttttgaaaaaaaatcttttttctgtgGCATCAAAGAGGTAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAGCATTGGGGATAGCCAA-GTGATATTGGAGTTAGG---AAGGTGTCACTCATCTCAGGGATTTCCCACCTTTTAATTGTTAATTAAAGAGCAAATGACTTATGAA--------------CAGCA-TCTCTGCCCA--CCTTAAGCCTGAA--CTATCAGTTCAT------CCTGCTGAAT-----GAAAAACTCTTTAATCTTTAGTCCTTTTACATCAAAAGGCAACTT----CTTCTGGATGGTGTTTATAAGAATTGATGAATATAAATACGCATGTGATCTTTGTAATCATTTACTTGACTC-----------CAATACCTGTGT-AGCAAGTGTTACTTGATTTTTGTAGCACTCTGAAATTCAGTTTCCTTACCTCTCAGTGGAACACTGCTACAGTACTTTTATGTTGGCATTTagaggaatgacttagaaagtaTTCTGAATACTTgagtttaaaatagtttaaaattgaTAAAGTTTCTGATAAAGAACTCAAGTAAAGAGCTAATTTAGCTGATTGAAGCAGAGCAAGACATTTTGCAGGGATGGGTATTAGAATGGGTTTTCTTCTTAACTCACTCTTAGGAGAAGCAGCTAGTTTGGGTGCCTGATAGATAAGGTTATGGAAAAGTGTGTAGAAGAGACAAAATTTTGATCATAGAACTGTTACTATACCACCAAGCTGAAAAAA-----------------TTATGAGTCTAAAATTAGCATGATTATTTGGAGAACAaccttctttctt

a score=6885
s chr3           144970355 399 + 160039680 AAGTCAGGGGTGAAGTGGATGTATTCTGCTTTCTCTTCACACTGTGTGAATTGCCTGGTGTAGGGCTCATCTCTGCCCTCAACGGTGGGAGGTGCCACTTTAATGTCAGCCTGAGAATGTTTAAAAAGATTGTTAACA-----------CTTGAAGAACAGAAAAGACAGTAATTAGAAAAACTCTGAA----------TCAATAACTGTGT--AGCAAAGCTAG----------------CAAGCACCAGAAAATACTTTTTTTGTTGTTGT------TAGAGGAAAATTTGATA---------CTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCT
s HiC_scaffold_1 130994498 447 + 233722169 AAGCTTGGAGTAAAATGTATGTATTGTCCTTTATCTCCACATTGTCCATATTGAAGTGTGTAGGGATCACTGCTGTACGTAGGATGAGGATCAGCCACTATGACATCTGCCTAA--ACAGTAAaagaacaagcaaacaaaaacaaattgcaagagcaacagaaaaca----aattgCAAGTGCTTTGAAGACAAGCACTTTTGAATCTGCATTAAGAAAAGTTAGATCACTGATTTAAATACAGGAATTAAAGAAAgttatattaacttttaaaaagcataggAAACAATTTAAGAGCTCAGTAGCCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCT

a score=5335
s chr3           144970606 164 + 160039680 CTTACATGCTTGTAACTCTCCTGTTTTGGCCTCCTGTACTGGGGACTGTCTTTCCAACTCTCAGGAATTAATATAGATACATTTTTGAAGAAAAATCTTTTTTCTGTAGCTTCAAAAAGGTATGTAGATGCTTTAGTCACCATTCCCTAT-----TATCAAAGGGAAAT
s HiC_scaffold_1 131351600 166 + 233722169 CTTACCTTTTCATATGATTCTTGTTTTACTTTGCTGTAATTG---TTAGCTTTCCATGTGGCAGGTATCAATATCTGTATATTTCTGAAGAACACTCTTCTCTTGGTAGCATTGAAGAGGTAAAAAGAAGCTTCAGTTATCATTTCCTATACACCaaccaaaggaaaat

a score=23755
s chr3           144973047 2220 + 160039680 TGTATAA-GTAGATGATAGCAAGTCACAAAATTGCCTGATG-----------AAGACTTTGTAAAAGGATAAGTGTCAaaaacaaaacaaaacagaacaaaaACCCTACAAAACTGCAGACATGTTGGCAAAGGA-----TTGAATTTCTACTTCTAATGTTCAATAGAAGACTACACTGAGAAATCTTTTATGTATCTAAAAAACTCTTTATCAAATATCCATTTTCTGAATTCAAAAACATTTGAAGCCAACCATTTATTCCTGAACACCAAGATTGTAT------------------------------------------CTTTTTT-----TTTTTTTAATTGCTC---------AAAGGACACCAGGTAGTGA-CACCTCTGAGCTGCTGGGTGGTTGACAGAGAATGCATGACAAGTGGAAGCCAACTGAAATCATAAGGATAATTCAGGTCATGCCCAGTAGGGAACTCAACAACGAGCACTGATCCCAATGGGGATGACCCCAAACCAAGTAGAAG---TTGT-GGATGTTGCTCCTGAGGATGGGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACA-----TGGAATGTTGGGGTTGGAAGAGACTTTAGCAACCTAAAGTCCTAAGATCAGT----GAGGGGGCCTCTCCCTCTGTTTG----------CAACCACTTGGTGGGCTCACACCCTCCACACACTGATCGACTCTAATTTTCACTTAAGTACACATTTTACATCTCCCCATGAATTCAGATG-------TCATGGATGCCAAAAAGGACTTCAATCTGTAACCACCTCGAGCTAGCT-----CCTCCTCCCCAGGCACAGC------TCTTTGTTAT-AGT-TTCCCTTCCCAGCTGATGAAAGT----TCTCTACAAGTAGTTAAGCCAAAGTTGGAAAGTT--------------------------TGCCTTGCCTCTTA-ACATTTCA-----CAAGAG-TGTTGTCTTTCATGCTTTCCAAATATGTTCAGCATCACTTGAATCACTCCTCATACCTTGTCCCAGTCAACA--------CTCCTGTTCATAACCACAGCCTGGCTCCTTCTTCACCCCTATC---CTACA---TTCATACAGTGATGTGATATGAGTGAGCC----------TTCTATGGTTTCAGGT---AGACAGAGCGGTCATAGAATAGACCCCAAAGGGTCCACATCCTCCACTAAGCTCTTTCATGGAGTCTCATTACTTTCCAAAGCTCTGGGCTCTGCCTCTGT--GCATAAGCCTCTCCCAGCTTCAGTGTAAGA-CAGACACCCTTCCTCCAGCTTATTCACTGTTTCCTTGATTATGTGACCTGCTATTACCCACATAAGGCTCTCGTCTTGGCGTCTGCTCACATGTCATATCATCAGTGGGGCTTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCT-ATTACAGCTGTGCTCTGCTTTGCCTTGCTCTT--CTGAGGCAGCGTGCTCCACAGTAACCTACT----AACCTCATACCTACTCTCCCACTCACTCTGATATTACTGATGTCCTGGAAAAGAAGGCATACCTATATTTCCTTTCTCTTTTCAGTT-ACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCATGCACAATAATTAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAGGCTGAGATCACAGAGGCTCTCTG---CTTTGTCTTTGATCTTAAGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAATGTGTTAGAGCCTTCATCTCACTCCATGCCTTCTAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCAGAGGTTTTCACAGTAACTCTTACTATTACTATTAACATTTTTATTCTTCATAACTCAAATAGGAGAAA-GCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-AGAGGCCTTTGTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACCTGTTAGCTCATTGAGGGATGGTGACTGTTTAAAGGTCAATGTT----CATGTATAG-GATACACATAGC--CAGGTTACATAACAGTTTTTTGTTTGGTATTGTTTA-----AAGTGATCAGAAAA---------------------TTATAAAATACATAGCATCCTTTCTTCTTGAGACACAATATGCTGCTTCCCATTTTCAGTTAATT
s HiC_scaffold_1 131257528 2258 + 233722169 tgtataatgTGGATAATGGTGTTTCTCAAAATTACTTGATGGTATAAATACAAGCACTTTGTAGAAAACTGAGTATCAAGAAACATGTGAAG----------------------TCTAGGCATGTCtgcaaagaacaaaattaaatttctctCTGTAGCATTCAAAAGTTGACCATGTTAAGAAGTTTTCTGCTTTTAGAAACAATTCT--ATCAAATATT-GGTCTCTAGGCTTATAAATGTTTGTACCAAAT--TTTATCTCTGAACACTAATAGTCTATAATTCTGAATCAGCTATGTTATCTGCTCCTCAAGCCTATGTACTTTATTAAAAGTTATCTTTATTGCTCCTGGAATTCAAAAGGCATGAGTAATTGAGCACTTCTGTGCTACAACAGCATTTATGAAGAATTAATGAAGAATGGTAACCA--TGGAATCGCAAAGTC---TCACCTGTAGCTTAGAAG--ATTTGAACAGTAAAGATTAGTACCCA-GGAGAGGAG---AAATTGAATATAAGGAATTGTTAGCTGTTGAAGtcaggaaaagggaaaataatcaaATACCTTAAGTAGCAATCTCTATACTATATGAAATACCACTGttggaaaaa--tatagaaaattagagTCATTGGATCTGTCTTGGAGattttctctccctccatctgtcCTTCCTGACATCTAC-----GGACTCATATCATCTACATGTTGATGACTGtcaatttt--------tagaagttttaca-------gtGAATTCAGATTCTCATTTTAATCTACATGAATAGGGTCtgaaatgcatatttatttagaAATGGCTAAATTCAGATTTCTAAAATATACCAAATTTTCTCCactttcagtcttttctttccagtTGATAATAGTGCCATCTTTCCAAGTGTTCAGGCAAAATTTGAAGTCTTCTCAactcttacattttcttctttcctgccttACCCCACGTACATCTAAACCATCAGGAAATCTTGTCTATGACACCCTCAAAATATATTCAGAGTCAT---AAACATCCCT--------GTCTTAGTTACCATCACTTCTCACCTGTCCAAACTCCCTGCCTGG-TCCTTCTGCACTTCTGTGAGGCCACAGTGTTTATACAGG--------ATGAATGAGCCACAAACCCTCCTCCATATCCCTCTGCCTCAGTCACAGTGACCCCCGAACACGCATGGGAGCATGAGAAG-------TGAGCCCGTCT------TCCCAGTGGTCTCTCCAGGTCCAGCTCCTGCATTTTTCCTCCTCAGTCACCACTTTTTTTGTTGCCACATCAAGCAGCCTCTCACCTCCATGCTCTTCGGGTCCCGCAGGTTTCCAAGGGCCTCTTCCCCCA-------CTCGTTGCGGCCCCTGGCCAGGCGTCACATGCTCAGCGAGGTCTTCCTGA---CTCCCCCACATACAGCAGTACCTCACGTCCTCCCCTGATTGCAGCCACAGCCCCCTCTGTATTCTCCTTTCCTGATCTTACATACTCTGCAGCAATCTCTTGCCAAACCACTTGGCACTTTATTCATCTTTTCAAATTATACT----CCGTGAGGCTAAAggc-------------ctttttctctttaattcacTGTTCTCTCCTC-------CAGCACAC-----------CATGagtatttagtaaatattt-------acctCATGTGACTCTAAGAGCtaatttacagatgagaaaactgagg-ctcagggatgcCCTgagtctttttgcttttttgtggcGAGATAGGATTGAACCCTGTCCACGactcc----atctccctctgtc-----------cctccagcACTGACCACACTATCTCAGGCTGCTTCTTCT----------TTCCTGTAGCACTCAGAG--TTCTATAATAGT-----CGATCATTATTAG--TTTTTTACCTTCATGATTGGTACAGAAGAAACGCCCTTCCTCCTTACCTTTATGTGTTCAATTATTTCTCCATCTTCTGGCACATCAGGATCTATAGCAACGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCCCCAGCAGGTGCAGGACTAAGAGGGG---AACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATG--TATATATACTCCTAAAAATTATCTGTT-GTTGATTATGGGATGGAGACTGTGTAAAGGTCAATGTTAttacacatacagaaaaatatgtgACTTTAGCTTCCACAATA----TTTATTGCACATTATTGAAAATTAAGTGTTCAAATGGCATAATAGATATGGAATATGTTTATCAAATGTACTGCACATTTTCTTCCT--GATACTGTTTTATACTTCCTAATTTTCATTAATT

a score=23273
s chr3           144973047 2608 + 160039680 TGTATAA-GTAGATGATAGCAAGTCACAAAATTGCCTGATG-----------AAGACTTTGTAAAAGGATAAGTGTCAaaaacaaaacaaaacagaacaaaaACCCTACAAAACTGCAGACATGTTGGCAAAGGA-----TTGAATTTCTACTTCTAATGTTCAATAGAAGACTACACTGAGAAATCTTTTATGTATCTAAAAAACTCTTTATCAAATATCCATTTTCTGAATTCAAAAACATTTGAAGCCAACCATTTATTCCTGAACACCAAGATTGTAT------------------------------------------CTTTTTT-----TTTTTTTAATTGCTC---------AAAGGACACCAGGTAGTGA-CACCTCTGAGCTGCTGGGTGGTTGACAGAGAATGCATGACAAGTGGAAGCCAACTGAAATCATAAGG--------ATAATTCAGGTCATGCCCAGTAGGGAACTCAACAACGAGCACTGATCCCAATGGGGATGACCCCAAACCAAGTAGAAG---TTGT-GGATGTTGCTCCTGAGGATGGGAGAAATGATCATGTAGCTGAAATGGCAGTCTTTACA-----TGGAATGTTGGGGTTGGAAGAGACTTTAGCAACCTAAAGTCCTAAGATCAGTGAGGGGG----CCTCTCCCTCTGTTTG------CAACCACTTGGTGGGCTCACACCCTCCACACACTGATCGACTCTAA---TTTTCACTTAAGTACACATTTTACATCTCCCCATGAATTCAGATGT-------------CATGGATG----CCAAAAAGGACTTCAATCTGTAACCACCT-------------CGAGCTAGCTCCTCCTCCCCAGGCACAGCTCTTTGTTATAGTTTCCCTTCCCAGCTGATGAAAGT----TCTCTACAAGTAGTTAAGCCAAAGTTGGAAAGTT--------------------------TGCCTTGCCTCTTA-ACATTTCA-----CAAGAG-TGTTGTCTTTCATGCTTTCCAAATATGTTCAGCATCACTTGAATCACTCCTCATACCTTGTCCCAGTCAACA--------CTCCTGTTCATAACCACAGCCTGGCTCCTTCTTCACCCCTATC---CTACA---TTCATACAGTGATGTGATATGAGTGAGCC----------TTCTATGGTTTCAGGT---AGACAGAGCGGTCATAGAATAGACCCCAAAGGGTCCACATCCTCCACTAAGC---TCTTTCATGGAGTCTCATTACTTTCCAAAGCTCTGGGCTCTGCCTCTGTGCATAAGCCTCTCCCAGCTTCAGTGTAAGA-CAGACACCCTTCCTCCAGCTTATTCACTGTTTCCTTGATTATGTGACCTGCTATTACCCACATAAGGCTCTCGTCTTGGCGTCTGCTCACATGTCATATCATCAGTGGGGCTTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTATTACAGCTGTGCTCTGCTTTGCCTTGCTCTT--CTGAGGCAGCGTGCTCCACAGTAACCT--------ACTAACCTCA-TACCTACTCTCCCACTCACTCTGATATTACTGA--TGTCCTGGAAAAGAAGGCATACCTATATTTCCTTTCTCTTTTCAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCATGCACAATAATTAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAGGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTAAGGTGAGA--AGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAATGTGTTAGAGCCTTCATCTCACTCCATGCCTTCTAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCAGAGGTTTTCACAGTAACTCTTACTATTACTATTAACATTTTTATTCTTCATAACTCAAATAGGAGAAA-GCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-AGAGGCCTTTGTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACCTGT-TAGCTCATTGAGGGATGGT-GACTGTTTAAAGGTCAATGTT----CATGTATAG-GATACACATAGC--CAGGTTACATAACAGTTTTTTGTTTGGTATTGTTTAAAGTGATC------------AGAAA---------ATTATAAAATACATAGCATCCTTTCTTCTTGAGACACAATATGCTGCTTCCCATTTTCAGTTAATTTCCTAAGCATACACAAAGACTTTCTTATT--------------------------TTTATAGAATA-------------------------------------------GGATCATAAAATAAAA---------------------------CCACAATAAAATGTTTATCCATTCTAGAGCCCTGCCTGCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATC----------TATACAATAATGA-TATAAATA---AAATGCTAGGTAAAATGAGCTTGAAACAC-AAGGCTGTAAAGCATCTCCTACATTTAAGGAGATTTGATAAAGTCGAGTTATCACAGTAAACAAGCAAGCAAACAAACAGACCATCCCTACTATATAGGAATAGAACTTGTTTTTCA-------ACGTCA-----------TACTTTGCTCGTCACTGTTGAGGAAGGATACACAACATAGAATTTAAATAACTG--AATTTGATCTTTGAAAGAACACA
s HiC_scaffold_1 131123701 2754 + 233722169 TGTATAATGTGGATAATGGTGTTTCTCAAGATTACTTGATGGTATAAATGCAAGCACTTTGTAGGAAACTGAATACCAAGAA--------------------ACTATGTGAAG-TCTAGGCATGtctgcaaaaaacaaaattaaatatctcTTTGTAACTTTCAAAAGATGATCGTATTAAGAAGTTTTC---GCTTTTAGAAACAATTCTATCTAATA-ACGGTCTCTAGGCTTATAAAAGTTTGTACCAAAT--TTTATCTCTGAACACTAATAGTCTATAATTCTGAATCAGCTATGTTATCTGCTCCTCAAGCCTATGTACTTTATTAAAAGTTATCTTTATTGCTCCTGGAATTCAAAAAGCATGAGTAATTGAGCACTTCCGGGCTACAACAGCATTtatgaagaatgaatgaaaaatggtAACCA--TGGAATCGCAAAGTCTCACCTATAGCTTAGA-------------AGATTTGAACAGTAAACATTAGTACCCA-GGAGAGGAG---AAATTGAATATAAGGAATTGTTAGCTGTTGAagtcaggaaaagagaaaataatcaaatacCTTAAGTAGCAATCTCTATACTATATGAAATACTACTGttggaaaaa--tatagaaaatta--gtCATTGGATCTGTGTTGAAGactttctctccctccatctgtcCTTCCTGACACCTA-CGGACTCATATCATCTACATGTTGAT-GActgtcaatttttttatttta-tagaagttTTACA-------GTGAATTCAGATTCTCATTTTAATCTACATGAATAGGGTCTGAAATGCACATTTATTTAGAAATGGCTAAATTCAGATTTCTAAACTACCAAATTTTCTCCactttcagtctttt------------ctttccagtTGATAATAGTGCCATCTTTCCAAGTGTTCAGGCAAAATTTGAAGTCTTCTCAactcttacattttcttctttcctgccttACCCCACATATATCTAAATCATCAAGAAATCTTGTCTATGACACCctcaaaatatattcagaatcAT---AAACATCCCT--------GTTTTAGTTACCATCACTTCTCACCTGTCCAAACTCCCTGCCTGG-TCCTTCTGCACTTCTGTGAGGCCACAGTGTTTATACAGG--------ATGAATGAGCCATAAACCCTCCTCCATATCCCTCTGCCTCAGTCACAGTGACCCCCGAACACGCATGGGAGCATGAGAAG-------TGAGCCCGTCTTCCCAGTGGTCTCTCCAGGTCC---AGCTC----CTATATTTTTCCTCCTCAGTCACCACTTTTTTTGTTGCCACATCAAGCAGCCTCTCACCTCCATGCTCTTCGGGTCCCGCAGGTTTCCAAGGGCCTCTTCCCCCA-------CTCATCGCGGCCCCTGGCCAGGCGTCACATGCTCAGCAAGGTCTTCCTGA---CTCCCCCACAAACAGCAGT-----CCTCCCTTG---ATTGCAGCCACAACCCCCTCTGAATCGTCCTTATCTGATCTAACATACTCTGCAGCAATCTTGGTAAGAACCAATCTTGGTAAGAACTCGgcattttattc--atctttccAAATTGTACTCCGTGAGG--------CTAAAggccttttcccctttaattcaCTGTTCTCTCCTC-------CAGCACAC-----------CATGagtatttagtaaatattt-------acctCATGTGACTCTAAGCGCTAATTTACAGGTGAGGAAAGTGAGGCTCTGGGATGACctgagtttt---ttggtttttttggtgaGATCGGATTGAACCCTGTCCACGactcc----atctccctctgtc-----------cctccagcACTGACCACACTATCTCAGGCTG-CTGCTTC---------TTTCCTGTAGCACTCAGAG--TTCTATAATAGT-----CGATCATTATTAG--TTTTTTACCTTCATGATTGGTACAGAAGAAACGCCCTTCCTCCTTACCTTTATGTGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCCCCAGCAGGTGCAGGACTAAGAGGGG---AACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATG--TATATATACTCCTAAAAATTATCTCTGCTGTTGATTATGGGATGGGAGACTGTGTAAAGGTCAATGTTAttacacatacagaaaaatatgtgACTTTAGCTTCCACAATA-TTTATTGCACATTATTG--AAAAGTGTTCAAGCGGCATAATAGAAATGGAATATGTTTATCAAATGTACTGCACATTTTCTTCCT--GATACTGTTTTATACTTCCTAATTTTCAATAATTCCCTAAATATAGGCATAAACTTTACAGTTTATAGAATGTAATGTGAACTTTATAGTTTATAGAATATAATGTGAACTTTATAGAATGTAACGTGAAAACTGAGCATTTCAGTTCATGAAGTATAAACCCGTTCAGTGTGCATCTTCCTATGTCCAAAATAAATTGAACAGATGTGATAATGATGTGGCTCAGTTTTGTAAAACAATTTAATTATTATCTAGGTCATTTTTTATCTAAATGATGGTATACAATCATAAGTATAAATACTTAAATG--AGGTAAGATGtattt-aaacacaaaaattttaatgcCTGTGATAAACTTA---AGATTtgataaattcaaatttttaaatttttaaaac-------------------tcctgtTTAGTATGAATAGAATTTGTTTTATATCTATACACAACAAACACAACTGGTACTTTAGTGGTTACTGTAAAGGTAGCATGAATAACATTTA---TGGTTAACTGTTCATTTG-TATTTACAAGGGCACA

a score=27124
s chr3           144973048 2568 + 160039680 GTATAA-GTAGATGATAGCAAGTCACAAAATTGCCTG-----------ATGAAGACTTTGTAAAAGGATAAGTGTCAaaaa-----caaaac---------aaaacagaa--------caaaaACCCTACAAAA--CTGCAGACATGTTGGCAAAGGATTGAATTTCTACTTCTAATGTTCAATAGAAGACTACACTGAGAAATCTTTTATGTATCTAAAAAACTCTTTATCAAATATCCATTTTCTGAATTCAAAAACATTTGAAGCCAACCATTTATTCCTGAACACCAAGATT--------------------------------------------------------GTATCTTTTTTTTTTTTTAATTGCTCAAAGGACACCAGGTAGTGA-CACCTCTGAGCTGCTGGGTGGTTGACAGAGAATGCATGACAAGTGGAAGCCAACTGAAATCATAAGGAT--AATTCAGGTCATGCCCAGTAGGGAACTCAACAACGAGCACTGATCCCAATGGGGATGACCCCAAACCAAGTAGAAGTTGTGGATGTTGCTCCTGAGGATGGGAGAAATGAT-CATGTAGCTGAAATGGCAGTCTTT-----ACATGGAATGTTGGGGTTGGAAGAGACTTTAGCAACCTAAAGTCCT--AAGATCAGTGAGGGGGCCTCTCCCTCTGTTTGCAACCACTTGGTGGGCTCACACCCT-------CCACA-----CACTGATCGACTCT--AATTTTCACTTAAGTACACATTTTACATCTCCCCATGAATTCAGATGT------------CATGGATGCCAAAAAGG-ACTTCAATCTGTAACCACCTCGAGCTAGCTCCTCCTCCCCAGGC-----ACAGCTCT----TTGTTATAGTTTCCCTTCCCAGCTGATGAAAGT----TCTCTACAAGTAGTTAAGCCAAAGTTGGAAAGTTTGCCTTGCCTCTTAACATTTCACAAGAGTGTTGTCTTTCATGCTTTCCAAATATGTTCAGC----------ATCACTTG-----------------------AATCACTCCTCATA-------------------CCTTGTCCCAGTCAACACTCCTGTTCAT-AACCACAGC-------CTGGCTCCTTCTTCACCCCTAT------CCTACATTCATACAGT-GATGTGATATGAGTGAGCCTTCTATGGTTTCAGGTAGA--CAGAGCGGTCATAGAATAGACCCCAAAGGGTCCACATCCTCCACTAAGCTCTTTCATGGAGTCTCATTACTTTCC-----AAAGCTCTGGGCT---------------------CTGCCTCTGTGCATAAGCCTCTCCCAGCTTCAGTGTAAGACAGACACCCTTCCTCCAGCTTATT--CACTGTTTCCTTG-----ATTATGTGACCTGCTAT---------TACCCA--CATAAGGCT----------------------CTCGTCTTGGCGTCTGCTCACATGTCATATCATCAGTG-GGGCTTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCT--ATTACAGCTGTGCTCT-GCTTTGCCTTGCTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCCACTCACTCTGATATTACTGATGTCCTGGAAAAGAAGGCATA-CCTATATTTCC------TTTCTCTTTTCAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCATGCACAATAATTAAAAAA--ATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAGGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTAAGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAATGTGTTAGAGCCTTCATCTCACTCCATGCCTTCTAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAG----CATTCAGAGGTTTTCACAGTAACTCTTACTATTACTATTAACATTTTTATTCTTCATAACTCAAATAGGAGAAAG--CCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGG---TCACCCAGAGGCCTTTGTTTC-------------------------TCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACC-----TGTTAGCTCATTGAGGGATGGTGACTGTTTAAAGGTCAATGTTCATGTAT---AGGATACACATAGC--CAGGTTACATAACAGTTTTTTGTTTGGTATTGTTTAAAGTGAT---CAGAAAA----------TTATAAAATACATAGCATCCTTTCTTCTTGAGACACAATATGC--------------------TGCTTCCCATTTTCAGTTAATTTCCTAAGCATACACAAAGACTTTCTTATTTTTATAGAATAGGATCATAAAAT------AAAACCACAATAAAATG------TTTATCCATTCTAGAGCCCTGCCTGCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATCTATACAATAA--------------------TGATATAAATA--AAATGCTAGGTAAAATGAGCTTGAAACACAAGGCTGTAAAGCATCTCCTACATTTAAGGAGATTTGATAAAGTCGAGTTATCACAGTAAACAAGCAAGCAAACAAACAGACCATCCCTACTATAT--------AGGAATAGAACTTGTTTTTC---------------AACGTC--ATACTTTGCTCGTCACTGTTGAGGAAGGATACACAACAT
s HiC_scaffold_1 131170068 2810 + 233722169 GTATAATGTGAATGGTGGTATTTTACAAAGTTTCCTGGTTGTATACAGATAAAGACTATGGAAAGggttcaattttagagaacctccgAAATGATTCTCAGAAACCTGAAATGGTTCTCTGAAACCTGAAATGGTTCTCTGGAAATGTCTGTGAATAGTACAATTTCTATTTGTGTTGTCTAATAGAGGGTCATGTTACGAATTTTTTCCCCTCACACATAA---TTCTATCAAATAGCGATTT-CTGGGTTCAGAAATGTTCAAAA--AGTTAATTAT--CTGAACACTAAAATCTATCATTCAGAATCAGCTGTGCTATCTGTTCCCCAAATCCACACTATTTAGTAAAAGCAATCTTCATTTTCTCCTACAATTCCATAGGTACCAATAAGAAAACACCTTTGTGTGGCAACAGAATTTATGAGGAATGAATGATAAATGTCATCCA--TGGCATCAGCAGCTTTCCACTCAGGTCATGCACATTAGAAAGTTTAAACAGGACCTAGGA-----ATGGAG--GATTTTAGGAGAA--AGAACTGTTAGATATTgatgtcaagaaaaagaaaaataattcatatagCTGAAATAGCAATATCTGTGCTACATGGAATGTTAGAGTgggaagaaattttagaaaattggaGTCCTTGAGCAACTTCTGGAGtgattccttttctgtttttactcACTCAGTGGACTCATATTATGGCTGAGTCACTGATGTCATTGATTGGCTTTCAAATTTTTATGTATGTGCAA---TTATTTTTTACCATGAATTCAGATTTGTATTTTCTCTACTTGGAGGTCTAAAGTGCATCTCATCTTCAAAACACCCCAAACTAACTCTGCATCTCCCAACTGCCAAATATTCTCCACTTAcaattttttcccttcccagttaAAGAAAATCTCATGTTTCCAAGT-GTTCAGGCAGAGCCTTGAAGCCTTCTTCAGCTCtta-catttc---------cttccttccctgcc--ccACATACACCCGACCATAGGCCATATCACCTGTGAAACCCGTAAAATACCttgacaatcacacattttaataGTCTCTACCATGACCTCCCTGTCCTACTC------CCTGCTCACCAGCCTTAGCTCCTTTCCTGGTTC-TTCTAAACTTCTGTGTGACAACAGCATTCATGCAGGAGAGGTGACAATGGAAATCTTCCCCCACTTTCTCCACGCTTCAGAGGGATCCCGGAAGACATACAAGAGCACACACCTCTGCTCAGAAGC-CTTCCGTGGGTGCTCTTCTCACTCAGGATAAAAGCTCAAGTCTGTCCTGTGATCCGGAGAGTGGCTGCCACTGCAGCTTTGCCGCCCCCT------------------TGCCCTTCCTCCTGCTCATTGCTGTTGTGTTCTTGGGCTCACCAATCAGTCTCTTATCCTTCGGTGTTCCCATCCAGCAGGTTTGGGGGGGGGGCTCCTCTCTCACTCATCTCTGTCTCTGCTCAGATGTCACATCCTCAGTGCTGTCTTCCCTGA---CTCCCCTACATTCAACAGTAGCAGAAAATCTCCCCTCTGTTCCAGCCACATCctcattctgttctcttttcttgatTTACTGTACTGCAGAGAAACTCCCTGCCTTCTCATCAGCTGCGTTACTCATTTCTATC------ATGTCTCTTAAAAGAATACACAATCCATGAGGCCAGGaacctttttatttaattcatggcTCTTTCTTC-------CAACATG-----------ACAtaagcatttaataaataattatttcaagATCA---TGTGAACCAAAGAACTAagttccagatgaggaaactgaggctcagggaggacCTGAATGCTGT-TCTGCTCTTGAG----------------------AGAAAC----GGAACTCTGTCTAGGA-----------CTCCACTTAACTTCTGCCCCTCCAGCACTGTCCTTATCTGTTCCAAGCTTCTTTGAAACTTCCTGCAACAGTTTCCATAATAAC-----CAGTCACTACTAA--TTTTCTTTCCTCATAATTCAAACTGAAGAAATTTCCTTTTTGCCTTACCTTTATGTGTTCAATTATTTGGGGATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCCTTTGAGTCCCCCAGCAGGTGCAGGACTAAGAGGGG---AGCGAGGGCTCTGAACAACCCCATGGTTCCTCTCCAGAGCTTTCCC---GACGCttgtttccatatatatatacacaccatatatatatgtatatatatatatgtatatatata----tatatataatcatgagTGTTGGCCAATTATGGGATGTTGGCTGTATAAAGGTC-ATGGTAGTATATGTGGGAAAAGGTATGACTTCAATTTACACAG---------GTTTTATTGTATGTCAAGAGACATGCAGGAAATCAAATCTTTTTACAATGTACtccacatttttctcttctgagaCATATTTTTCCCatgattcatatatttttatagtgCCTAATTCTGGTTAATTTCCTAAATGTAAACATGGAGTTTATACTCTGTGCAGAGTATACTGTGAAAATTAGTACAAATTCATAATGAACTGAACAGATGCATTGATGCTAATGATTT-TCTTCAGTTTGCAGAACAATTTAATTATGATCTAGATTATTTATCATCtaaataacaaaaccaaatgtAAGATCATTCTGTTGTAAATgataaacaataaacaaaatgggTATGGAATTTGA------------------ACATTTTAAGGATTTTGATAAATTTAAGATTTGATAGT---CAATTCATTAAACAAAAA--------TTACTGTACAGTAAAGAAggaatagaatttatttttctccaaacaTGTTAAAAATATCTAGTACTTTGCCAGTTATTATTGATGCAGTGTAAATAATAT

a score=21111
s chr3           144973886 1739 + 160039680 AAGAGTGTTGTCTTTCATGCTTTCCAAATATGTTCAGCATCAC----TTGAATCACTCCTCATACCTTGTCCC------AGTCAACACTCCTGTTCATA-ACCACAGCCTGGCTCCTTCTTCACCCCTATCCTACATTCATACAGTG---------ATGTGATATGAGTGA-------GCCTTCTATGGTTTCAGGTAGACAGAGCGGTCATAGAATAGACCCCAAAGGGTCCACATCCTCCACT--AAGCTCTTTCATGGAGTCTCA--------------------TTACTTTCCAAAGCTCTGGGCTCTGCCTCTGTGCATAAGCCTCTCCCAGCTTCAGTGTAAGACAGACACCCTTCCTCCAGCTTATTCACTGTTT---CCTTGATTATGTGA-------------------------------CCTGCTATTACCCACATAAGGCT-------CTCGTCTTGGCGTCTGCTCACATGTCATATCATCAGTGGGGCTT-CTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCT-TGCCTATTACAGCTGTGCTCTGCTT-TGCCTTGCTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCCACTCACTCTGATATTACTGATGTCCTGGAAAAGAAGGCATAC-CTATATTTCC----TTTCTCTTTTCAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCATGCACAATAATTAAAAAAATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAGGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTAAGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAATGTGTTAGAGCCTTCATCTCACTCCATGCCTTCTAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAA--------GCATTCAGAGGTTTTCACAGTAACTCTTACTATTACTATTAACATTTTTATTCTTCATAACTCAAATAGGAGAAA-GCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-AGAGGCCTTTGTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCA--CCTGTTAGCTCATTGAGGGATGGTGACTGTTTAAAGGTCAATGTTCATGTATAGGATACACATA------GCCAGGTTACATAACAGTTTTTTGTTTGGTATTGT--TTAAAGTGATCAGAAAA-------------------TTATAAAATACATAGCATCCTTTCTTCTTGAGACACAATATGCTGCTTCCCATTTTCAGTTA---ATTTCCTAAGCATACACAAAGACTTTCTTATT----TTTATAGAATAGGATCATAAAATAAAACCACAATAAA--ATGTTTATCCATTCTAGAGCCCTGCCTGCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATCTATACAATAATGAT----------ATAAATAA--------AATGC-----------------------------TAGGTAAAATGAGCTTGAAAC------ACAAGGCTGTAAAGCATCTCCTACATTTAAGGAGATTTGATAAAGTCGAGTTATCACAGTAAACAAGCAAGCAAACAAACAGACCATCCCTACTATATAG---GAATAGAACTTGTTTTTCA------------------ACGTCATACTTTGCTCGTCACTGTTGAGG----AAGGATACACAACATAGAATTTAA
s HiC_scaffold_1 131217985 1790 + 233722169 agaaatgttgccTCTGATGCTCTCAAAATATGTTCAGAATCACATACTTTAATGATCTCTACAACCACCTCCCTGCCATGGTCACCATAGCTGCTCACCTGCCACAGG-----TCCATATCTGATTCTTCTATGTGTCTATGCTGTGGCAGAGTTCATGTAGCATGGGTGACAGTGCAGCTATCTCCTGTTTTC--TTCGCATCACAGTCAGAGT---GATCCCAGAG----CATGTCTCCTGCTTAAAAGCCTTTCATGGATTATCAGCTCAGAGTAAAAGCTCAAATTA--TCCCAAGGGTCTGGGCTCTGC---------------TCTATCAGCTTCA-TGAACGCCAG---TCCTTCCTCCTGTTCAGTCACTGTCATCACCTTAGTCATCTCAAGCAGGTTTCTAACCTTCATTCTAGTGCTATCCTGCAGGTGGCCAAGGGGGTCTTCCCTCACTCCTCTCAGTCTCTGCCTAGATGTTACCGTGCCAGTGAGTTTTTCCCTGA---CTATCCTCCATGAGA--GAGGTTCTCTCTCTGTGCAAGCCACACCC---CTCAATTTATGTC---CTCTGTCTATATATCGTAACCCTCAGAAACATAATA---TCTGACCtgctattttattcatttt--tcttaattatatgtCTTAAATGTATGTATACTCCATGATGCCAGATGCTTTATTTTCTGT-AGTTCACTGCTCTCC----TTCAGCATGCATAAGCATT--------CAATAATTAA-----TTATTTATGCAATAGATATATCCTACAGctaatttacagatgaggaaaccaaggctcagagaggAGCC------TGTCTTTGGTCTTGTAGTGAGA------------------------CAGGAT-------TGAACCGTATCCAGGACTTCATCTCTCTCTGCCCCTCCT----CTGTCCACACTACATCAATATGCTCTAAACTTATTTGGCATTCAGAG--TTTCAAAATAAT-----CAGTCATTATCAGT-TTTTTAACCTTCATAATTTGTACAGAAGAAGTGTCCTTCCTCCTTACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAGCCCCACAGCAGGTGC---AGGACTAAGAGGGAAGCGAAGGCTCTGAACAGCCCCATTGTTCCCCTCAAGTCGTTTGAAAAGCTTTTATTGTGACTTGTTTTTCTCCACGTATATATATACTCCTAAAAATTATCTCTGTTA-CTGATTAGGTGATATTGACTGTGTAAAGGTCAGTGTG-ACACATGGGAGA-AGATATTTTACTTCAATTtgcataatattttattgtattttactgtAAATCAAATGATCAAGAGGCATAGCAGAAACCCaaactttataaaatgtattGCACATTTTCTTCTT--GATACTGTTTTATACTTACTAATTTTGATTAGATATATTTTATGT--------AGAGTGTAATGtgagaattaataaaaattcataataaattaaaaataaattacatcatATTAATAAAGT---------TGCT--CATCTCACAGAACAA------TAt----tattatatagattttttaCCTAATAATGATTATTTATGGAATAAATAATGCTAGTGAATGCAAGATCATGAAGCATAAGTAACACCAAATGAggtaaaatggatttgaaatcTAGAGCTAAGACTTTAATGGCTTTGATAAATTTA---AGATTTGATAAGGTGAAGttat-----taaactaaaaagaaatc-------cTATC----CTGTATAGAATGAATGGAACTTGTTTTATACCCATGCATAACACAAGTACTTGCTACTTTGCTCATTACTGTTAAGATTATATGAATACAATAGTTAACATTTAA

a score=20882
s chr3           144974256 1360 + 160039680 CTCGTCTTGGCGTCTGCTCACATGTCATATCATCAGTG-GGGCTTCTCTGAGGGCTTCCCTGCAGGAAACAGTGACTTACACTCTTGCCTATTACAGCTGTGCTCT-GCTTTGCCTTGCTCTTCTGAGGCAGCGTGCTCCACAGTAACCTACTAACCTCATACCTACTCTCCCACTCACTCTGATATTACTGATGTCCTGGAAAAGAAGGCATA-CCTATATTTCC------TTTCTCTTTTCAGTTACTTCTCTTTCCTCAATGGTTCAACAAGCATATGTGTATGCATGCACAATAATTAAAAAA--ATTACAAAAACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAGGCTGAGA-TCACAGAGGCTCTCTGCTTTGTCTTTGATCTTAAGGTGAGAAGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAATGTGTTAGAGCCTTCATCTCACTCCATGCCTTCTAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTC----AGAGGTTTTCACAGTAACTCTTACTATTACTATTAACATTTTTATTCTTCATAACTCAAATAGGAGAAAG--CCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCT--GGTCACCCAGAGGCCTTTGTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCAC--CTGTTAGCTCATTGAGGGATGGTGACTGTTTAAAGGTCAATGTTCATGTATA---GGATACACATAGC--CAGGTTACATAACAGTTTTTTGTTTGGTATTGTTTAAAGTGAT---CAGAAAA----------TTATAAAATACATAGCATCCTTTCTTCTTGAGACACAATATGC-------------------TGCTTCCCATTTTCAGTTAATTTCCTAAGCATACACAAAGACTTTCTTATTTTTATAGAATAGGATCATAAAAT------AAAACCACAATAAAATG------TTTATCCATTCTAGAGCCCTGCCTGCATTTTAAAGAGCAAATCACTTATTACCTATTCTCTCTGTCATCTATACAATAA--------------------TGATATAAATA--AAATGCTAGGTAAAATGAGCTTGAAACACAAGGCTGTAAAGCATCTCCTACATTTAAGGAGATTTGATAAAGTCGAGTTATCACAGTAAACAAGCAAGCAAACAAACAGACCATCCCTACTATATAGGAATAGAACTTGTTTTTC---------------AACGTC--ATACTTTGCTCGTCACTGTTGAGGAAGGATACACAACAT
s HiC_scaffold_1 131095852 1353 + 233722169 CTCATCTCTGTCTCTGCTCAGATGTCACATCCTCAGTGCTGTCTTCCCTGA---CTCCCCTACATTCAACAGTAGCTCAAATTCT---CTGTTCCAGCTACATCctcattctgttctcttttcttgatTTACTGTACTGCAGAGAAACTCCCTGCCTTCTCATCAGCTGCGTTACTCATTTCTATC------ATGTCTCTTAAAAGAATACACAATCCATGAGGCCAGGAACCTTTTTCTGTAATTCATGGCTCTTTCTTC-------CAACATG-----------ACAtaagcatttaataaataattatttcaagATCA---TGTGAACCAAAGAACTAagttccagatgaggaaactgaggctcagggaggacCTGAGCTCTGT-TCTGCTCTTGAGACAAACGGA----ACCCTGTCTAGGAC---------------------------------TCCACTTAACTTCTGTCCCTCCAGCACTGTCCTTATCTGTTCCAAGCTTCTTTGAATCTTCCTGCAACAGTTTCCATAATAAC-----CAGTcactattaa--ttttctttcctcataATTCAAACTGAAGAAATTTCCTTTTTGCCTTACCTTTATGTGTTCAATTATTTGGGGATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCGTTTGAGTCCCCCAGCAGGTGCAGGACTAAGAGGGG---AGCGAGGGCTCTGAACAACCCCATGGTTCCTCTCCAGAGCTTTCCCGACGCTcgt-tttccccttttctttcacCATATATATACACAGTCCTAAA-ATCATGAGTGTTGGCCAATTATGGGAAGTTGGCTGTATAAAGGTC-ATGGTAGTATATATGGGAAAAGGTATGACTTCAATTTACACAG---------GTTTTATTGTATGTCAAGAGACATGCAGGAAATCAAATCTTTTTACTATGTACtccacatttttctcttctgagGCATATTTTTCCatgattcatatatttttatagtgCCTAATTCTGGTTAATTTCCTAAATGTAGACATGGAGTTTATACTTTGTGCAGAGTATACTGTGAAAATTAGTACAAATTCATAACGAACTGAACAGATGCATTGATGctagtaattt-ttttcagtttgcaGAACgatttaattattttctagatTATTTATCATCTACATAACAAAACCAAATGTAAGACCATTCTGTtgtaaatgataaataataaacaaaatgggTATGGAAT-CTGAACATTAAGgattttgataaattta---aaatttgat-------agttaattcattaaacaa--aaattactgtacag----------ttaagAAGGAATAGAATTTGTTTTTCTCCAAACATGTTAAAAATATCTAGTAGTTTGCCAGTTACTACTGATGCAGTGTAAATAATAT

a score=11482
s chr3           144974550 621 + 160039680 AAAAATTACAAA---AACAGAATGAGAATCCAACTTCTAAATGACAGACAAGGAGG----CTGAGATCACAGAGGCTCTCTGCTTTGTCTTTGATCTT----------AAGGTGAGA---------AGATCATATCTCTTCTAGAACCTCTAGAACCTTCATCTGGAATGTGTTAGAGCCTTCATCTCACTCCATGC--CTTCTAAAACTGTCTGCTCTGTTTTCAAACTTCTCAAAGCATTCAGAGGTTTTCACAGTAACTCTTACTATTACTATTAACATTTTTATTCTTCATAACTCAAATAGGAGAAAGCCTGATTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAACAGGCCCTCTGGAGAAAGCCATCATTCCAGCCTGGTCACCC-----------AGAGGCC-------TTTGTTTCTCTGTGTCTCTTGGCAGGTCTATATATACTCCTAAACATCACCT----GTTAGCTCATTGAGGGATGGTGACTGTTTAAAGGTCAATGTT-CATGT---ATAGGATACACATAGCCAGGTTACATAACAGTTTT
s HiC_scaffold_1 131047006 611 + 233722169 aaaaatttcaaagttaaaaaaatgag--TCCAAGAGCTTATTTACAGATGAGGGAGGAAACTGAGATTCGAGGAGGTCATGGACTTGTCTTTGGCCTTGTAGTGGGACAAGGTGGGACCCGGTGCAGGACTCCAtctctttctgcctctccagCATGGTCTTTT----------------------TCACACCATGCTGCTTCTGGA----------CTCCCTGCAATATCCCCACAG-----ATATATTTCCACAATAATCGTT-----TGCTATTAAC---TTTGTTCTCCACAATTCAAG-------AAATCTGAC---CTTACCTTTATGCGTTCAATTATTTGTCTATCTTCTGGCACATCAGGATCTATTGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAGCCCTGCAGCAGGTGCAGGACTAAGAGGGG---AGCGAGGGCTCTGAACAGCCCCATTGTTCC--TCTGTTCCTTCTTGGTTTGAATGGTGGTTTGTCAAGTTTGTCTTTTGCGTTTTCTTAGC--TTTTTCTCACACTCACACATACCATATCAGCATGGGCTGATTATGGAATATTAACTGAATAAAGGTCAGCCTTACATATGTCATAAAACATGTGCCTTCAGTTTGCTCAATCGTTTT

a score=5282
s chr3           144974840 150 + 160039680 TTTTCTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCTGACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGAAAAC
s HiC_scaffold_1 130996290 150 + 233722169 ttctcttaccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTTCACCTCAGGCAAGAGATGCAAAGCTAAGAGCAGAATAAC

a score=5775
s chr3           144974844 142 + 160039680 CTTACCTTTATGTGTTCAATTATTGTTGTATCTTCTGGCACAGCAGGATCAATGGCAATAATGATGTCTTCATAACCATTCTCATTCAGCCTTATCAAGGAAGTGTCT---GACCCCCAAAGCAGGTACAGGAGGAGGAGGAGGA
s HiC_scaffold_1 131313332 145 + 233722169 CTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGA

a score=45919
s chr3           145004079 3064 + 160039680 taatagaATATTTGTAAAAAAAGATTATGAAATATATTATAATTTCTTTATCACTCGC-------------CCTGAATCTACCTACCTCTTCTCATTTCTTTCCACTGTGGCTTTAAGCATCACTGACTATGTGCATTCAGGCACATAGTATGCATTTCTAAACCCAATGGGACCTCCA-ATGTGTAATTTCTCCCTTCCATACCTGTCTCATCCTCATTCCGATGAATGAGAATGAGAAGAAAAGAAGACACATTCTTGCTGATGTTAGTCCAAGGTCCTAAATAAGAAACCAGAACTCTTGTATTTAAATAGTTTGGTAGGCATTTCTGATAGTTT-----------------------ACTAGTTAGTAGATTAACTGCAATTGAGTCTTATTTTTAGCTGACTGAGTTCCTTAGGA-CAAATTCAAATCTACTCCCATCTTCTGATACAAGCAACACTTGCA---AGCATTCAAA-TTACCATCCAAAGACCGAGCAGTGATAAAACTTTTGTATTTGAACAGATAATTTTTA---ATGCACCCAGACCCAGTTTTACAGCTTCGAGTGTTACTATACCGCCCCCTACAGGAAGTCTAAAGTACATTTTTAGAAAATTCTCCAGTGAAAGGAATGACTGGTTGATTTC---TTGCCTGAAAATTCAGTGCAAACCTAGTGTCACCTGCATTTCCCCTAGCCACTTCCACATTATCTTCAGCACGTGGATGCCAGGAATGGTGCTGTTGATGCTGATGTCAGGACAAGGGGGAGTTGAGTCTTCGGGAATGGGCGGCTCCTGAGCGGGG---ATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaaataaaaattaaaGTAGTGAGAGAGGATGTAATGATCAAGTCTTAACCTTTAAAAACTATTAGGAATTACATCATCTCAATGAC-----GTTACAACAGATGAATGGAACTGAGTAACCGTATTTACAAGGGCTGTCACCTACTGTGCACACATGTTA----CTCTTAGCAAAG--------------TTGGTTCAATGATGGCTCAAAGCCTCTGTCAAAGTATCTGAGCCTGGTGCTTGGCTGGGAAAGGAGGGTGCTCA-----TTGCTTAGTACTCCTTTACTTGGAAGGGAGG--TTGGTGCTAGTGTTTCTTGAACACTAACATGCTCAGAG----------GACCTTAAAACACAGCTTCTAATTTATAAGGTT------------------------CTTAAAACACAGATCCTAGTTCT-----TCAGGTCAGACAG------------CTGCCCA--------TACATTTCATAAAT----GCGTTCTA-----------------------------GAAACA-------------------------------GAGGAG------------------CGTAGGCT--------CTACCCC------------AGACCTAA---------------CTTTTATGTTTG----------------------------------AGAGTC-AATGT-CTAGCAAGTGGGGAAATTTCCTTCAAAGA------------------------------------------------------------TATTTACTCTCTATTCT----------------------AGAGTCTTTTTCTAGGA-ACTCTAAAAAAACGTATTCGTCA----Gaaacaaacaaacaaacagacaga------caaaAATGAAACACAAAATCCTGAAGTTTTCTTTTCCTACATAAAAACATCTTGTTACTTAAGAAGGTCGGCTTCTTAGATTTAA------------AAAACCGTGTGCCTTTAATTTCAGAAGCCATTTGAGATTCC--CGCCTTCTGTCTTCTCCT-CCTCCCAGCACA------------------------ACCTCTGCTTGGTGGGTGAGCGCCTCTCTAGGGT-----CTGCGCATCAGTCTCACCTCTCCCGTGGTCGTAGTCATCCCCAGGAGCCGTCCACGTCAGATTCACCAGGTTCTGCCCTTGGATGCTGGCCTTCAGGTCAGTGATTTGACAGGGTGGAAAGAGGTCAGGAATGGGAGCTGCTGCGGGGACATTGGTGGCCACAAACGATCCCCCTGAAGATGTCCTGCTGAAGCACAGCTGCTTGTCTTGAAC------ATAACTAGTTTCAGGACGTGGTGGGTTCATTCTTACTTCACCTGTGTTAAAAT-TTATTCAAAATATG---AAAAACACCAGTA-----------GTTTTCCCATTTTCTAGCCTTCCCATTTTCTCCTGGGCCTTCCTTCCAATTCTTCCTGCCTTCTGCCAACAAAACCCACTTTAAA-GTCTGGTAACAAGACCCCAAATCGGG--TTGTATCAGAAGACAATGGGCAAAGGGAGACCCTCCTGTCTTTACCTGACAGGCGTTTCCTGGTAATAGGGaagcaaaacaaaacaaaacaaaacaaaacTTAGAAATTGTATTTCTTCTCTCATTGGTTGTCTTTAATTTAAAAGCTTATTTATTTAATTATTTATGCAGacgggaagcatatggaggtcagaggacaaattacaggagtggagtctctcctgccaccatgtggagcccaggaatggaactccaatagttaggcttagcagcaagcacctttacctactgagccatctcactggcccGTTGCTTTCCTGTCTTCTACAATGCCCGTTTAGA------CTCT-GTTTAAACATGATATCACTCAAAGAAGCCCCATGTCACTGTGAT-AATATTTTGAGTGGCATATTC--TCCCATTTATTCAGTACTTGATCTCCTTGGCTTTTGAAGATTTCCTTGATTGTTTAATTTATGCAATTTTCACATTTTTCATATTTGTGCTTTGTCTTTCTTCCTTGATGGCAATTTAACATGAAATAGTTTACATTAAGAATTCCAATCCCAATGTCCTCTCTCttatttggggacagtgtctcagtatgtagctcaggttggtctcaaacctgtgatcttcttgcctccatctctggatgctgagattgaagagatgcaccaccCAATTGTCTCAGTCACTACCTGGGAA--TTTATTCAAGTAGCAATTGCAGACTTTGCTTCACA-----CTTGTACAAAGCTAATTCTGTGCTTCAAAC-ACTACTGTGGCTTGCTCAGCCAATTGCACTCTCAGAACCCATCTTCAATAAA---GCCATTTTGATCACATTGCAGCGTTATTCAGAATTTACCTTCTCATAAATTCTACTT
s HiC_scaffold_1 131287159 3202 + 233722169 TAACAGAACACTTGGTACAAAA-------acataaatgtttatttctgaatcactttctcttccttcctggcCTGAAGGGACTTTTCCCACCTCATTTCCTGCCACAGTGTCTTCAATTATCACTGACT-TGTAATTGCATGCATGTAACATATGTGGGGAATCTTTATGTTTTTTCTACATTACAAAATCCTTCCTTAAATATATGACCCTTGCTCA--------------AATCCAGAAACATGAAAACATATT---ACAGATCTCA-----------TACATTACAAGTCATACTTTGTATAATTTA------TGTTGGGCATTTCCAGCattctttaaatgaaaacaaaatcttttagcTATTCATTGGATTAACAGCAATTGCATGTCCTTTTCAGCAggcaaaacttcttaaaaatgaattacaaCATACTCTCTTGTATTGATACAGGCACTTCTTTTATGTAGAATTCAAAATCATTATTAAAAGACCAAACAACGATTAAGCATTTGTATTCCAATAGAGATTACATATATACGCATGTGTTCCTAGCTGTGTAGCATTTGGT-----TATATCGCCCCCTGCAGGAAGCCTAAAATAGATTTT-AGAAAACACTACAATCAATAGCAtggttcatttattttgcttctcatGAAAAGACAGTGTTAGGCCAGTGTCAGCTGCAAATCTCCTACCCATTTCCAGATAATTCTTAAAATGTGAAGGCCAGGAATGGTGTTATTGATACTAATATTAGGACTAGGAACAGAAATGTCAGGAGGACTAGGGGTCTCTGGAGGAGGAGGAATAAACAAAGACACTTGGGCCAAGTTGGATATTTCTGATTCCAGATTAGCCTTATCGACAGCCTTAATAGCAATGAAAAGATTGGTGCCATTTTCAAAGGCAATGTTTTCTGGTTCAAACACAAAGATTTCCTCAGAGTTGGCCTTCTTTGGGATGAGACCAGTTGTGTTCACTTGAACTGAAGCATTGAACTTGTCTCTGAGGTCAAGGACATTTGTACTCATTCGAATGATATACTTGAAAgctaaagaggaaaagagaaa--aaagatgt-----aaCTTGAAATTCTCACATCTTAATGGT--AAGTCTATTAGAAATTATAT-ATCACCATACCGTAAAGTTGTAACAGAGAAATAGAAT----CAATTGTATTGACAAGTATTAATATTTCTTCTGTATTCTTATTCGTATATCTTAACAAAGTGATAAATGTAAAATTGGATTGGTCATGACTTAAAActtttgtcatgttttcttctact----tttgGCAGAAAGAAGAAGTCATTTAATTACTTGCttattgttttattatgtatAGAGGAGATTTTGATACCAAGACTTCTCAAATGTTAAAGTGCATAAAAATCACCCAGTGATCTTAAAATTCAAGCTCTAGTTCATTAGATCTGGGTTGGGAGTGGAGGGTCTACATTTCTAACAAGTATCCCTGTGTTACCTATACTGTCTGGCAGGACCTGAGATTTCTTCCAAAGGATATTTCCATTCCACAGATATTGGTGCTCTATTCCCAGTCCTTCTCCAGAAATCACTACTGAAAAATGGGGTGTCCTGAGATACTTTGGCAAGAGTCGAGAAGAAAACTAAAGTTTGCCTTTGCTGGCTGAAACCTCTTACTCCCTGTTATGGCTTAGACCTAAAATGGTCCCAGAATCCTTGTGTGTTTGGAAAATGATTGGATCCGGTGGTGCTATTAGGCATAGAGCCAAATGTGCTGTTAAGAGGTGTGACTTTCTTAGAAAAGGCAGATCACTGGTGACCTGAGCCACCTAAGACTCTCTGGCTATGTCTCTCTctggctcctctcttctccctgtgCTTCTTGGTcgccatgacatgagcagctttcctttgtAGCAGGCCCTTCCACCACGTGAACTTCACCTTGGAGCCTGCCAAC-CACGGACTGAACCTTTTGAAatggtgagccaaaa---taaacctcttctcttttaaat---------ttgatCCTCTAATAGGCCAGCTTTTCAGATTCTACACCTCTCATTTAAAGCCCTTTACCTTTTATTTCAGATAATATTTAGGAATTCTGTGCCTTCTGCCCTATCCTGTATTCCTACACATAGCCCTTCCTCACTTCCTTCTATACCTCTGCTTGACTGGTAAACTTCTTGTCAGGATCCACCCTGTGC-TCAG-CTTACCTTGCCCATGATCATAATCATTGCCAGGAGCTGTCCACGTCAGGTTGATGACACTGTAACCCTGCACCTTTGCCCTCAGGTCAGTGATCTGACAAGGTGGGAAGAGGTCAGGGATGGGAGCTTTT---GGGACATGAGAGGCCACAAACGAACCTCCTGAAGATGTTCTGCTGAAacacacttttttattttgaacttcaGTCTTATTATTTGCAGGTCTTGGCGGATTCAATTGTATTTTACCTGTAttaaaagatcatttaaaataCGGTAAGCAACACCACTAAATGGCTGAACATCTCTCCAGGTTTTAGTGATAACAATt---------------ttcttactcttcttttttcctttatatgaAATTCATCTTAAATGTCTGGTGACAAGACCCCAAGTCTGTGCTTACTTCAGCGG--------------------CTCATATATAGACTTCA---------------AATCAGGTTgcatcaaagatttaaaaaaaa-------gagaaaatgactttTTTATCTCACAGGTT--------TTCAGGAG---ATTTAGTAAATAACCTCTGCA------------ATGTA-------------------------------CTTTTG-TAACATGT---GTCCTGGAATT---------------------------ATCTTCTTTTCATTCTATGCC--------TGTCTTTAACTTAC---TCTTCCACAAGGTCAGTCTAAATAATGCCTCTAATTTAAACCTCAGGTTCCCTTACAAAATCTC-TATCATCCAGATAAAAATACTGAACTTCATGATCTTTCCCATTTATTTAATAATGAGTCATCTAGACCTTTAAGAATTCAAAGGATTGTTCTAAGTAGCTCTCTTTCAC-TTCTCCATACATGTGCTTCATCTTTCTTCTTTGATTACAATTTCTCATTAAATGTTTTATGCtaagaatttcaa----aatgt-----------------------------------------------------------------------tttacttcTGAA-----AGATT--------------TCCAACTTGCTTAATGAATTcatgggaaatttttttcttgtagcaATC---CAATTTCCTTTACACTCTTCTTGTATAAAAGTGATCTTTGGATTCAAACAAATGCTCTGGCCTCCTCAATTAGTGGGGTAATCAGACTATGCTTTTAATGAAAATGTTACTATAATC-TAAAATGGCATGACTCCAAATTTACTTTCTCATAAACTGTACTT

a score=9239
s chr3           145004793 323 + 160039680 CAGGACAAGGGGGAGTTGAGTCTTCGGGAATGGGCGGCTCCTGAGCG------GGGATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaaataaaaattaaaGTAGT
s HiC_scaffold_1 131072972 324 + 233722169 CAGCAGAAGGAGTAGTCTGAATTTCACTAGTAGATGGTGTTGGATCAACTTCTGGGGTCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGCTCAATCATGCTTCCACTTATCCTTATGATATACT-----GTTGAACTAAGAAAAAAAGTTACATGTAGT

a score=9656
s chr3           145004793 323 + 160039680 CAGGACAAGGGGGAGTTGAGTCTTCGGGAATGGGCGGCTCCTGAGCG------GGGATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaaataaaaattaaa-GTAGT
s HiC_scaffold_1 131148192 325 + 233722169 CAGCAGAAGGAGTAGTCTGAATTTCACTAGTAGATGGTGTTGGATCAACTTCTGGGGTCAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGGCCTCCTTTGGCAGCAGGTCAGTCGTGTCAACTTGAAGCGCATCATCAAAATTGTCTCTCAGATCAATCATGCTTCCACTTATCCTTATGATATACT-----GTtgaactaagaaaaaaaagttacatgTAGT

a score=8466
s chr3           145004838 265 + 160039680 CGGGGATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaaataa
s HiC_scaffold_1 131107854 260 + 233722169 CAGGGATAAACAAAGCCAGTTGAGCAATGTTGGACACTTTTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGCTTCAATATGAAGGTTTCCTTGGATTTGAACTCCTTTGGTACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATGTATC-----GTTCAACTAAGAAAAAA

a score=9230
s chr3           145004838 265 + 160039680 CGGGGATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaaataa
s HiC_scaffold_1 131184528 260 + 233722169 CAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTCTGATGTCAGATTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTTGCATTTTCTTCTGAGATATTTGCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTGACCTCCTTTGGCACCAGGTCAGTCGTGTTAACTTGAAGAGCATCATCAAAATTGTCTCTCAGGTCAATCATGCTTCCACTTATCCTTATGATATATC-----GTTCAACTAAGAAAAAA

a score=9274
s chr3           145004838 265 + 160039680 CGGGGATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaaataa
s HiC_scaffold_1 131234486 260 + 233722169 CAGGGATAAACAAAGCCACTTGAGCAATGTTGGACACTTTTGATGTCAGACTGCTTTTGTCTACACTTTGAATGGCAATGAAGATGTGGGTCGCATTTTCTTCTGAGATATTTCCTGGTTTAAATGTGAAGGTTTCCTTGGAGTTAGCTTCCTTTGGCACCAGGTCAGTGGTGTTAACTTGAAGAGCAGCATCAAAATTGTCTCTCAGCTCAATCATGCTTCCACTTATCCTTATGATATATC-----GTTCAACTAAGAAAAAA

a score=8211
s chr3           145004840 259 + 160039680 GGGATGAACACAGACACCCGTGCAATGTTGGAGATTTCTGATTTCAGATTGGACTTATCCACAGCCTGGATAGCAATGAAGATATCTGTGCCATTTCCAAAAGTGTTGCCTCCCAGTTCAAACTCAAAGATTTCCTCAGAGCTGGCCTCTTTGGGGATAAGACCGGTAGTGTTCACTTGGAGTGAGGTGTTGAAGTGGTCCCTGAGATCAACGATACTGGTGCTCATTCGGATGATGTAGTTGGAAGCttaaataaaaa
s HiC_scaffold_1 130977634 259 + 233722169 GGAATAAACTTGGTTACATGTGCAATGTTAGAGACCTCTGAGGTGAGATTGGCCTTACTGATGGTTTGAATTGCAATATAGACCCCAGTGCCATTTTCGATCTTAAGAGATTCTGGTTTAAATTCAAAATGTTCTGCTGAGCCGGCTTCCTTAGGTATCAAACCAGAAGTATTCACTAAAAGAGCGTTGTGAAAGTCATCTTGGAGATCCAGGAAACATTTACTTATTCTTATAATATAATGATCAGCTGGAAAACAAA

a score=74352
s chr3           145007363 2880 + 160039680 AAAAGTGAATCACATGGAGATGTGATATTTTATCTTGTAGATGA-TGTGATTTGGAGCCCAAAGTGGTTAAAAGTTATGACCTGCCTAACtggttttcacatggagtattttgctgtctcacgggacagcagaggatggccagacaggtttctgaatgtagtaacttgggggtggggctgtcactggtacctagt-ggtggactccaataatacagcagaat--tctccaagacccaagagtgtgtactcagcacacaggatcactcggtcacaaatgccaagaaggaagaggagaga----cccAGACATCAAGAGCTGTCTTGCATTCTTCTGCCTCACAGGCTTAACAGTTCTTCTAGACCCAAGCCGTTCAGTCTTCCCT---TTAGATCACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGAAAGTACCCATGAACACCCTGG--ATATCTG----------TATTTCCAATCCATATGTGAGTTAGCATTTT-------ATGGAGAAAATGAGCACTAGCTACAAGAGACCATGAGGCTTGATTATGTGTAGAATAAAGCCTGATGCTTATTT----------------------ACACTGTATGTGCACATATATACATACTT-----------------------ATATGTAAATCGTCTCACCCTGAACTGTCCTTTTCTTTTGAAATCAGAGGTCCTTTCACACATCTCTGTCATGACTGA---TATCCTGAGCTATCGACTCACTGATTACCTGCCAAGCCAAATCAGATTGTTCTATGTACATGACTGGGGAAGAAGAATTC------------------AAACTT------TCTCCCCAGGGAATATTTAGGCATGAAATTCATGTATACGTTTCATTCCAATAAAGAGAGTTCTGTCACAGTAAACAGACA----CCTTCTACAGAAGAAATACAGAATTCATTACTTCCTTATAGCTTTCTTAAGTGCAAGAAAAGTGGGCAGAATTTT-----TCACTTGGGGAGCAAGCCTAGCCTACAGCCCACATGGATAGAGTAATCATCTTGACATGTGCTGGAATTCATCTCTGCTATTTG-AAGATATGACAGTATCTCTTTGC---CAGTAATGGAGAGATAGTAGTACCTAAAAAGTG--TGGTGAACATAAAAATGAAGA-------------------------------------------------------------------TGTCTGCCTGTGCATACTTTTTGAG-----GAGGTTGTGG----------------------------------------------------ACTTGACTGTTA------------TATTTCTTCCTTTAGTTTGGAACGGATAACGTTCTGTGTAGTATCTAATCCTGTTGAGTTCAAAGCACTAATGCACTTTAGCTCTGTGGAGGCTAAGGTTGGGCCCTTCCTCACGTTTCTCAGCATTTTGAGATATGACATACATGAGCATGCAGAGAGCACTTTGGTCC------CCAGTGCTAGGTTCCTTGCTGCCAACTGCCTGCACTACAGTTCCTGTTAGCCATCCCACAGTGGTGGTATCTTAGAAGAA----GATCTAAGTTCAAGTTTCTTGAATGGTTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGCTCGCTTGAATGCTGTATTTCCAAAAGCCAACCTGTCCAGAAAAAATGCAGATATTTTCAGTG------TGTGTCAAAGACCTAACTTCACTGCCACTTACA-ACAATGCCTCTGTGACTAAAGTGTGTGGCAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCA-CCAAGGTAAACATGAGTGTGTTTGGACTGACTATGTGACTCCCATAGTCAAGACAAACTTAGTTAGGCATAATGAGGCTTG-AGGCTGCATCCTCACTGATCACTGCCCAGAGTTTCCAAGGCATGGGATTTCAAGGGACAGG----AGTTTTCGTCATCTCACAGCATCAAGGATCACTTGCTATCCCAACTGCTGTGCACTTCAATTGTTCCCTTTTATTTAGGGACATAAAATGACCT---TTCTCTTTCTCTTGTCTTAACTGCCAGGCTGA------CTTCAATGAATGAAGAATTT-TCATTGTTTTCTCCTGAAGTCAATAATCACTCCTTTTTTTTTAATGTACAATTATTTATAAAACA------ATTTTGTCT-----------GGTGTGCAAGGAAG----------CTGACTCCATACCTTAGCCGTGCCTGGGACTTGGAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCACTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGAAGATCAATGCTTTACTTCCTGGACAGTATAGAGTGCATCTCATAGTCTCACACCCTGTCCTGATTGCCAGGAGTCAATTCAAAGGCCAGAAGATATTCTTGGGTAC----TTTGGTGTTTAGGGTCACTTAGGATATAGTTCTAAATCCCTATTCCAGCTTCAGGTTGCCACGATATTGCTTTCTCCACTTAA--AAGACCATCTCCCTATAAGGGT--TTGTGACTTCCTGGCTTc----------------------atgctctttgcttcttccagacatcattcc------------------ttctccctgctggtccaagtct-accagtcctccagaattcagtgcaaatgttactttcttcataaagc
s HiC_scaffold_1 131291745 3113 + 233722169 aaaaatgaaacacacagaagttttacattttacttgGTAGAGGGCTAGAATTTGTA--CCAACATAGTCAAAAGTTATGTTTTATTGAGCTAGTTTGCCTCTTGAGT----------------GGACAGCAGATGATGTCTGGG-acattttttattgtgataaCTGGGAG------CTGCTACTGGCCTCTGGTTAGAGGAGGCCAGGGATGTTGCTAAACCATCTACAATAAACAGAACAGTGC-CCCACAGCAAAAGGTTGTCTGGCCCAAAATACCAATCGTGCAAAGCTGAGAAACTCTCAGTTCTC---------CTTGAATTACTCTGCCTCGCAGAGTT-----TTCTGCTGTTTCCAAGC------ATTTTACATAAGCTGAATTACTTACCATTCTCTATCCAGCCAGCTACAAGCAGGGCTCCATTTGACCTGGATGCTGTTCCCTGTCTGACTGTATTAATGCCTCCCAGGGCCCATATTTTCACACTGTATCTTCCGTTTGTATCATAAGCTATAAAATACCTTGAGTAGACACCATCATTCTTAGTAGCATCAGCACCTGGccagggaaatgaaggaaataataaatgtcCTAACAGTATCTGGGCATTCGtatatttataattcatataca--ttaacatttctcaaagcaaaaagaaattcagtattACCTCCAAAAGACCTTAGGATCTGATAATGCTAAGGATGAA-CCTACTTCTTATTTTACtgttgtgtgtgtggttttaccactgtatgtatgtgtggttttatattttatcattgtaTGAGTGGTTTTATATGTGTCTATCttcttttcttgaatttttcattctttgtgaaATCAGAGATCATGTCATATGACTCTGTTAC-ACTAAACATAGCATGAAGTAACTATTTAGTAAGTATGTATTCAACCA-----GAATGATTTCTGTATATGACTGGGGAAGAAAAAGTTCTATAtaactatttaataaaatttctgtCTTCTCCCCAAGGTAAATATAGCTGGGAAATTCAT-------------TCTAATAAGGCTATTTGCACCATAGCAAGCAGACATATTCCTTCTG-AAAAGAAAtgtagaatt----atttttttgt-----ctttgaatacAGAAACAATGGGCGGAGGTTTAGATTTCACTTTGGAAGCAAGC-TAACACAGAGTCTGCATAGACACGGGAATCAT-GGGAAGTGTGCTAAGATACACTGCTGCTGTTTTTGAACTATGAAAGCCTCCATTTATTCACTGTAATATAAAGATAATAATGTCTAAAAAATGAATGTTCTacataaaaatgaagacagatCTCTACGTAACTCTGTATATATGCttctatataaatatacacacatatttacattgtgtgtgtgtatgtgtgtgtgtatgtacagagttagagagacagagggagagagagggaggaagagaggaaagcagGGCAGGAAAAATATCTAACACAAAATAAGCTATTAATAAGCTAGCAATTTATCTTCTTTTAGATTGGGAGTTCAAACATCCCCTAGAGTCTCTGAGTCTATTGTGCTCAAGCCACTAATGCA-TTTGGTTTTATAAAAGCTGCGGC-AAGCCCTTCTTCACGTTTTCCAACATTTTAGAATACAGGAATCGTAGGGAGACATAGGATTCTTTCAGCCAGCCTTCCAGTGCTGGGCTCCCT---------------CACCAGACCTTCTGTCAT---TCCC----TGGTTGCttcttggaaaaacaaaaatatattttccaatt-cTTGGATGGTTACCTGCTCCATTATCCAGTAGTTCCAAGGTGACTGTTTTCCCATTTGCCGATTCAATCACAGCTGTGACCTGGGCCCCGAGAATTGGTGAAGCTCCTTGGTGAATATTTGCATAAACTATCATAGGACTGGGGAATTTGCCTGTGTCCTTGTTCATTTTGGAGGTCACTGTAATCGGAGGCAGGGTAGCACTTGATGCACGTGAGGTGACTGTCAGGGTGAGAGTTTGTGAGCTCGCTTGCAGACTGTATTTCCAAATGCCAACCTGACCAAAATAGATGCAGACATTTCCAATAAATAACTATGACAGAAGCTTGCCTTCAGTGGCACGTATAGGAAAAGGCTGTCTGACACAAGTGTGTTGCAAGCATATCTAAGACGTGGGCATCACCGGCACTTTGTCAGCCAAGGCACATTTCAGAGGGTTTGCACAGCCTACATGGTTCTCCTCGTTGGGAAGATCCCAATCAGAGAAAATAAGGTCTGAAAGCTGGGCCCTCATTTATCATTGGCCTGGTTTCCTAAGACATGGATTGCTGAGGTAGAAGGAACATTTTTTGTGCTGTCAAAGCTTCCAGCGTTGTTTTGCATCTTCAACACTATGTAATTGGAAGATTCTGTCTTTAGTATCTGCACAAAACATCATTAGTTTCCTTTCTCTTGACAT-GCTGGCAAACTGAGTGATTTTCCACTGCATGGAGATTTTCCCATCATTTTTTTATTGATTCAATACTTACTCTCCTCTT-------AGCAACTATTCTAAAAGCCACagttattttgttttaccttGTCAGGgtatgagaaggaaaaagaaaatcctgaCTTCGTACCTTAGCGATGTCTGGGACCTGGAGGTAGGCCATTTTGCTGGCTGCATCCACTACGAAACCATTCTGCCTTGTTCCACTGGGATCCCAGAGAAAGATTTGGGGCTGCTGATTTGTCCATGTGATAAGGAACAATGTGTCCTTTCCTACTGTGTCATCCACAATCACTGTGCCATTCATCCACTGGCGGTTCTGGAGGGTTGCTCCTCTACTCTCCAGCTGTTAAGAAAA-CAACGCTTTACCTTCTGGAGAACACGGCTCATATCCAATGGTGTTTTCTACTTCTCCCTTTCCCAAGTGCCCA---AAAAGCCATCAATGATGCCTCAGTTCTTGATTTGGTACTTACAACTA-TTATGATCCAGTTCTAAATTGCCTTTCTGGCTTTAGCTT-CCACAA-------TTTTCTACTGAAACAAGACCACTTTCTCA-AAGGATCCTTATGAATCTCTAACTTTAATAAATCTTTAAGTTCAATAAATcccttttattaatttataacattattgcACGCTCTTTTTCTGGAAGTTCTCTCCACTTGTCTAAACCTCACTCATCCTTAAAAATTGTGTTCGAC--TCACTTTCTCAGCAGGGC

a score=5901
s chr3           145007740 202 + 160039680 TAGATCACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGAAAG
s HiC_scaffold_1 131025119 202 + 233722169 TGAATTACTCACCATCTATTATGTGACCTGATATTTGTGTGGCTGTATTTTTTGGATGTCTTAAACTTCTCATAGCAATGTTTCTTCCTCCATAAGCTTGTACTTTTAAACTATATATCCCATTTTCTTTATAAGTTGTAAAGTATCTGGAGTAGATGCCATCATTCTTGTAAGAATCAGCACCttattttagaaatgaagg

a score=5408
s chr3           145007745 196 + 160039680 CACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGAAA
s HiC_scaffold_1 131109311 196 + 233722169 CACTCACCATTCACTACCCAGCGTGGTATATATGCAGCTCTGCTCAGCACATTATTTAAGCTTCTCCTGGTAGAGTTTGTTGCTGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTTAAGTACCTGGAATAGACCCCATCATATTTGAAAGCATCAACATCTAgttgtagaaataaaa

a score=6795
s chr3           145007745 200 + 160039680 CACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGAAAGTAC
s HiC_scaffold_1 131185998 200 + 233722169 CACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaac

a score=6944
s chr3           145007745 200 + 160039680 CACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGAAAGTAC
s HiC_scaffold_1 131236337 200 + 233722169 CACTCACCGTCCACTACCCAGCCTGGTATATATGCGGCTCTGCTCAGCGCATGCTTTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaatgaaaaaac

a score=6597
s chr3           145007746 195 + 160039680 ACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGAAA
s HiC_scaffold_1 130982024 192 + 233722169 ACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCT---GTTGTCTTAAACTTACTCTAGCTGTGTTTTTTCTTGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCTAGACATTGAGATATAA

a score=6555
s chr3           145007746 193 + 160039680 ACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGA
s HiC_scaffold_1 131150088 187 + 233722169 ACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCC------GTGGTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAA

a score=6555
s chr3           145007746 193 + 160039680 ACTTACCATCCTCAATCCAGCCATCTATGTACATGGCTCTGTTCTTCGGAGGTGCTGCTCTCTGTCTGTCTGAAGTGACTCCTCCCAGAGCCCATATTTTAACGCTGTATCTACCATTTGCATCAAAAGCTGTAAAAAACCTTGAGTAGACACCATCATTCTTGGTGGCATCGGCACCTTGATAAAGAGATGA
s HiC_scaffold_1 131074869 187 + 233722169 ACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCC------GTGGTAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCTTGTTATAGAAACAA

a score=5328
s chr3           145008871 1046 + 160039680 TAGAAGAAGATCTAAGTTCAAGTTTCTTGAATGGTTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGT--------GAGAGTCTGTGAGCTCGCT-TGAATGCTGTATTTCCAAAAGCCAACCTGTCCAGAAAAAATGCAGATATTTTCAGTGTGTGTCAAAGACCTAACTTCACTGCCACTTACAACAATGCCTCTGTGACTAAAGTGTGTGGCAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCACCAAGGTAAACATGAGTGTGTTTGGACTGACTATGTGACTCCCATAGTCAAGACAAACTTAGTTAGGCATAATGAGGCTTGAGGCTGCATCCTCACTGATCACTGCCCAGAGTTTCCAAGGCATGGGATTTCAAGGGACAGGAGTTTTCGTCATCTCACAGCATCAAGGATCACTTGCTATCCCAA-CTGCTGTGCACTTCAATTGTTCCCTTTTATTTAGGGACATAAAATGACCTTTCTCTTTCTCTTGTCTTAACTGCCAGGCTGACTTCAATGAATGAAGAATTTTCATTGTTTTCTCCTGAAGTCAATAA----TCACTCCTTTTTTTTTAATGTACAA--TTATTTATAAAACAATTTTGTCTGGTGTGCAAGGAAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTGGAGGTAGGCCACCTTAGTGGTTG---TGTCTAGTATAAAACCATTTTGTTCCAC-------TCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGAA
s HiC_scaffold_1 130982904  799 + 233722169 TAGAAGTGGATGCAGATTC------------TCATTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGGTAATGTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCA----TCTgcctgtctgaaaa------------------------ttaaaaa---------------------------------------aaagactgtaa-aagcttttgtaatattttcctactcttaaatttag-----------------------------------------------------aatataaaattatttaga-----------------------------------------------------------aatttaaa-----atgatttttcat---------------------atttgattttacaaACTGGTA--------AATAGtgcaattttatt---------------acttttatttctct---------------------gcttttatGACAGATGATGTGTTGCTATTTCAACATTGACTGTATGagatgttgtttttatttttttatcatagGAATTGACTAATAAAacgat--------gaaaataaaaaaaatggatc--TACCTCTGCAATGCCTGGTATTCGAAGTCGGGCAGAATGAATATTTAgcttatcttctttgaagtc-tgaggtttcatatatttttccttttggatcCTGAAGAATAATTTCTGGCTTCCTTCTTGTCCAGGTGACAACAAAGAAAGTGTCATTTCCGATTGTACTATCCACAACCACTGTACCATTTACCCATTTATTCCTTGTAATGTTAAAAGCTTTGCTTTCCAACtattacaaa

a score=8998
s chr3           145008876 314 + 160039680 GAAGATCTAAGTTCA-------AGTTTCTTGAATGGTTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGCTC------GCTTGAATGCTGTATTTCCAAAAGCCAACCTGTCCAGAAAAAATGCAG
s HiC_scaffold_1 131026389 318 + 233722169 gaaaatataaatttacttATAAAACTCTGTGAAT---TACCTGCACCATTGTCCAGCAGATCCAAAGTTTGTGTGTGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTAGGGAAGGTGTTtgtgtctttattcattttagcACTTACTGTGATTGGAGGCACGGCAGAATTTACTGCCTGAGAAGTTACTGTAATAGTTAATATTTCTGGATTTGCTTTGGCTTGAAGACTGTAAGTCCAAATGCCCACCT------AAAATGTGCAG

a score=11721
s chr3           145008898 1018 + 160039680 TGAATGGTTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGCTC------GCTTGAATGCTGTATTTCCA-------------AAAGCCAACC----TGTCCAGAAAAAATGCAGATATTTTCAGTGTGTGTCAAAGACCTAACTTCACTGCCACTTACAACAATGCCTCTGTGACTAAAGTGTGTGGCAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCACCAAGGTAAACA----TGAGTGTGTTTGGACTGACTATGTGACTCCCATAGTCAAGACAAACTTAGTTAGGCATAATGAGGCTTGAGGCTGCATCCTCACTGATCACTGCCCAGAGTTTCCAAGGCATGGGATTTCAAGGGACA--------GGAGTTT-------TCGTCATCTCACA-----GCATCAAGGATCACTTGC--------TATCCCAACTGCTGTGCA--------------------CTTCAATTGTTCCCTTTTATTTA----GGGACATAAAATGACCTTTCTCTTTCTCTTGTCTTAACTGCCAGGCTGACTTCAATGAATGAAGAATTTTCATTGTTTTCTCCTGAAGTCAATAATCACTCCTTTTTTTTTA-----------ATGTACAATTATT-TATAAAACAATTTT-----------------GTCTGGTGTGCAAGGAAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTGGAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCACTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGA
s HiC_scaffold_1 131111193 1018 + 233722169 TGAATG---ACCTGCACCATTGTCCAGCAGATCCAAAACTGTTGTGCGTCCAGTGTTTGATTCTATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAATAATCATGGGGCTAGGGAAGGTGtttgtatctttatttattttagcacTCACTGTGATTGGAGGCACAGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGCTTGCTTTGGCTTGAAGGTTATAAATCCATGTGAAATGGATTAAATCCACCTGAAATGTTCAATGAAAATATAAGTATTCACA------GTCAAA-------------------TTATAAC-------CTGTGATCTGATTAT-------GCAATTCTAATAT----ATATCATAGATACTTGG--AGAAGAATAAACAGATGTTGATGGATTTg---tgattttgtaaaattttcaacTGAGAC-----TGTTTAGGCAG---------------TGCACTCCAACTAGTGACTGCACTGTGT------AACATCTGAACTCGAAAAGTATATTTTTGGAAGTTTGTCTTGATTTTGGTCTTATACTTTGACTTCAAGAAAAATCTGCACATCAAGTAGCCCAGACTCTTTCCATACCTCCTCACAGAATTATTTTTtgattactttgttttctttcctctggtacatgaatt---ttttctcattttc-----------gaAAGAATTAC-ACAAT--ATGGAGAGTACATAGTATTTT------------GTATTCATTTGACATTTTGTAAGATCATTAGCATTTGCAATTATGACATTAAACAGTTTTCAACTTTGAAAATGCAGAGCAAGTCTATAAGGTGATTACTTACTCACCTGTGCATCTCCTGGTATGCTGAGAGAGGCCATTTGGGAATCAGTGTCCTGAGTGAAATTTTCTGTCAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGACTGTGTGGT--AGGTGACAAGAAAGAAAGTGTCCTTTCTCACAGTGCTGTCAACTGTCACAGTGTCGTTTATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaa

a score=10030
s chr3           145008905 1011 + 160039680 TTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGCTC------GCTTGAATGCTGTATTTCCAAAAGCCAACC-----TGTCCAGAAAAAATGC--------------AGATATTTTCAGTGTGTGTCA--AAGACCTAACTTCACTGCCACTTACA------ACAATGCCTCTGTGACTAAAGTGTGTGG-----CAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCACC-------AAGGTAAACATGAGTGTGTTTGGACTGACTATGTGACTCCCATA--GTCAAGACAAACTTAGTTAGGCATAATGAGGCTTGAGGCTGCATCCTCACTGATCACTGCCCAGAGTTTCCAAGGCATGGGATTTCAAGGGACAGGAGTTTTCGTCATCTCACAGCATCAAGGATCACTTGCTATCCCAACTGCTGTGCACTTCAATTGTTCCCTTTTATTTAGGGACATAAAATGACCTTTCTCTTTCTCTTGTCTT----------AACTGCCAGGCTGACTTCAATGAATGA----AGAATTTTCATTGTTTTCTCCTGAAGTCAATAATCACTCCTTTTTTTTTAATGTACAAT--TATTTATAAAAC---AATTTTGTCTGGTGTGCAAGGAAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTG-GAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCACTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGT---CCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGA
s HiC_scaffold_1 131076888  993 + 233722169 TTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCACATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTAGCACTCACTGTGATTGGAGGCACAGCAGCATTCGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGGGATTGCTTTGGCTTGAAGTTTGTAAAGCCATGTGCCCACCTAAAATGTTCAATGAAAACATAGTAAATATCCACAAGCTATTTTCAGGTTTCATTAtgcaattctaaaataaataatagacaTATGAACTACAATAAACAAGTGGTTgatgattttgagattttaaaaagatttaaattgtGGAAGT--TTGG--CCAGTCCACCCTCTCTAGAGTCATACATG-GTGTATAT------ACTGTGTGATGTATAAACTGGGAAAATAAATTTGTCTTGGC----TGTAGCTT----------------TGTTTGTTGACCTCAGT--------------------------AGCAATGTGCAT-----------ATCAAGCTGCCCATACCCTTCCCAT--ATTTCcttcttaattcttccttttt-----------catGATAGTtagtttgtttttcctgtttttagtCATTACAACTTTCAGGATCA---CAAGGAAAGAACATAGAATTTAATTTCACAGGTGCTGTGATCTTTAA-CATTCAGAGTTATGAAGTTAAACATTGTATTTTCAGCACTAAAAATTCAGAGGAAGTGTAA--AAGCTGATTGCTTACCTGTG-CATGTCCGGGAATAGTGAGATAGGCCATTTTGGAGTCATTGTCCTGTTTGAAACCTTCTATCAGTGATCCATTGGGAGCCACGAGAGAAATAGCAGGAGTCTGTGGTGTGGACCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTACCACAGTGTCATTCATCCAGGCGCCAGTGTCCAATGTTAGTCCCTTACTTTCAAgctgtttaaa

a score=14358
s chr3           145008905 1011 + 160039680 TTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGC------TCGCTTGAATGCTGTATTTCCAAAAGCCAACCTG-----TCCAGAAAAAATGCAGATATTTTCAGTGTGTGTCAAAGACCTAACTTCACTGCCACTTACAACAATGCCTCTGTGACTAAAGTGTGTGGCAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCACCAAGGTAAACA----TGAGTGTGTTTGGACTGACTATGTGACTCCCATAGTCAAGACAAACTTAGTTAGGCA---TAATGAGGCTTGAGGCTGCATCCTCACTGATCACTGCCCAGAG------TTTCCAAGGCATGG----------------------GATTTCAAGGGACAGGAGTTTTCGTCATCTCACAGCATCAAGGATCACTTGCTATCCC---------AACTGCTGTGCACTTCAATTGTTCCCTTTTATTTAGGGACATAAAATGACCTTTCTCTTTCTC----TTGTCTTAACTGCCAGGCTGACTTCAATGAATGAAGAATTTTCATTGTTTTCTCCTGAAGTCAATAATCACTCCTTTTTTTTTAA-----------TGTACAATTATT-TATAAAACAATTTTGTCT---GGTGTGCAAGG---------AAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTGGAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCA----CTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGA
s HiC_scaffold_1 131238344 1009 + 233722169 TTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCTGCATAAACAATCATGGGGCTCGGGAAGGTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAAATATAAGTATTCATAGT------CAAA-------------------TTATATC-------CTGTGATCTGATTATG-------CAATTCTAATATACAC----CATAGATACTTGGAGA--AGAATAAACAGATGTTGATGGTTTTG---CGATTTTGTAAAGTTTCCAACTGAGACA------GTTAAGCAGTGCACCCCAACTAGTGACTGCATTGTAAC--ATCTgaactcaaaaaatatattttcaaagtttGTCTTGGTTTTGGTCTTTTAGTTTGACTTCAAGGAA----AATCTGCA-CATCAAGTAGCCTAGA----CTCTTTCTATACCTCTTCACAGAATTATTCTTTGAttaccttgttttctttcctct-ggtacatga---gatttttctcattttcattatgGTTCTTACTTACAG----AATTCACAATATGGAAAGTACATAGTATTTT------------GTATTCATTCGACATTTTGTAAAATCACTGATATTTACAATTATGACAttaaacattttcaactttcaaaatgCAGAGCAAGTCTATAAGGTGATTACTCACCTTTGCATCTCCTGGTATGCTGAGATAGGCCATTCGGGAAACAGTGTCCTGAGTGAAA----TTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAATCCCTTACTTTCAAgctgtttaaa

a score=10965
s chr3           145008905 1011 + 160039680 TTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGCTCGCTTGAATGCTGTATTTCCAAAAGCCAACCTGTCCAGAAAAAATGCAGATATTTTCAGTGTGTGTCAAAGACCTAACTTCACTGCCACTTACAACAATGCCTCTGTGACTAAAGTGTGTGGCAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCACCAAGGTAAACATGAGTGTGTTTGGACTGACTATGTGACTCCCATAGTCAAGACAAACTTAGTTAGGCATAATGAGGCTTGAGGCTGCATCCTCACTGATCACTGCC---CAGAGTTTCCAAGGCATGGGA--TTTCAA---GGGACAGGAGTTT------------TCGTCATCTCACAGCATCAAGGATCACTTGCTATCCCAACTG-CTGTGCACTTCAATTGTTCCCTT--------TTATTTAGGGACATAAAATGACCTTTCTCTTTCTCTTGTCTT---AACTGCCAGGCTGACTTCAATGAATGAAGAATTTTCATTGTTTTCTCCTGAAGTCAATAATCACTCCTTTTTTTTTAATGTACAA--TTATTT-----ATAAAACAATTTTGTCTGGTGTGCAAGGAAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTG-GAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCACTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTT---GTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGA
s HiC_scaffold_1 131152086  989 + 233722169 TTACCTGCACCATTGTCCAGTAGATCCAAAACtgttgtgtgtccactgcttgaTTCAATGATCGCAGTCACAGTGACTCCAAGAATGGGCGCATACCCTTGTCGAACTTCTGCATAAACAATCATGGGGTTCGGGAAGGTGTTTGTGACTTTATTCATTCTCGCACTCACTGTGATTGGAGGCACAGCAGCTTTTGCTGCCCGAGAAGTTACTGTAATAGTGAGTATTTGTGAGATTGCTTTGGC-TTGAAGTTTGTAAAGCC-ATGTGCCCACCTAAAATG--------TTCAATG-------AAAACATAA--TAAGTATCATCAAGATATTTTCGGTTTTGACTATAGagt------------tctaaaataaata---atataaatatgggCTACCA---TAAACA----GGTGGTTGA--TGATTTGGAGATTTTAAAAG---------ACTTAAGTTGTGGAAGTTTGGCTAG--------TCCACCCCGTTTAGAGTCATACATGGTATATATACTATGTGAAGTATCAACTGGGAAAATAAGTTTGCCTTGGTTGTAGCGTTTTTTGCTCACCTCAGTAACAATGTGCATATCGAGCTGCCCATACCCTTCCCATATTTCCTTAAATCTTCCTTTTTCGCAATACTtagtttgtttttcctgttttttgtcaTTACAACTTTCAGGACACAAGGAAAGAACGTAGAATTTAATTTCACAGGTGCTGTGATCACTAA-CATTCAGAGTTATGAAATTTAACAGTTTATTTTCAGCATTAAAAAATTCAG-AGGAAGTGTAA--AAGCTGATTGCTTACCTGTG-CATGTCCGGGAATAGTGAGATATGCCATTTTGGAGTCATTGTCCTGTTTGAAACCTTCTATCAGTGATCCATTGGGAGCCACAAGAGAAATAGCAGGAGTCTGCTCTTTGGACCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTACCACAGTGTCATTCATCCAGGCGCCAGTGTCCAATGTTAGTCCCTTACTTTCAAgctgtttaaa

a score=13805
s chr3           145008905 1013 + 160039680 TTACCTGCTCCGTTATCCAGTAATTCCAGGGTTACTGTTTTTCCATTCACAGATTCAATCAAGGCTGTGACGCTGGCCCTGAGAATAGGCGAGGCTCCTTGGCGAATGCTTGCATACACTGTTACAGGGCTGGGGAATTTCCCTGTGTTCTTATTCACTACCGGGGTCACTGTAATAGGAGGCAGTGTAGCACTTGCTGCACGGGAGGTGACAGTCAAGGTGAGAGTCTGTGAGC------TCGCTTGAATGCTGTATTTCCAAAAGCCAACCTG-----TCCAGAAAAAATGCAGATATTTTCAGTGTGTGTCAAAGACCTAACTTCACTGCCACTTACAACAATGCCTCTGTGACTAAAGTGTGTGGCAAGCATGTCTGAGATGTGCATGTCCTTGATTCTCGGCCACCAAGGTAAACA----TGAGTGTGTTTGGACTGACTATGTGACTCCCATAGTCAAGACAAACTTAGTTAGGCATAATGAGGCTTGAGGCTGCATCCTCACTGATCACTGCCCAGAG------TTTCCAAGGCATGG----------------------GATTTCAAGGGACAGGAGTTTTCGTCATCTCACAGCATCAAGGATCACTTGCTATCCC---------AACTGCTGTGCACTTCAATTGTTCCCTTTTATTTAGGGACATAAAATGACCTTTCTCTTTCTC----TTGTCTTAACTGCCAGGCTGACTTCAATGAATGAAGAATTTTCATTGTTTTCTCCTGAAGTCAATAATCACTCCTTTTTTTTTAA-----------TGTACAATTATT-TATAAAACAATTTTGTCT---GGTGTGCAAGG---------AAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTGGAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCA----CTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGAAG
s HiC_scaffold_1 131187891 1015 + 233722169 TTACCTGAACCATTGTCCAGCAGATCCAAAACTGTTGTGTGTCCATTGCTTGATTCGATGACAGCAGTCACACTGGCTCCAAGAATGGGCACATACCCTTGCTGAACTTCAGCATAAACAATCATGGGGCTGGGAAAGCTGTTtgtgtctttattcattttagcACTCACTGTGATTGGAGGCACGGCAGAATTTGCTGCCCGAGAAGTCACTGTAATAGTGAGTGTTTCTGAGTCTGCTTTGGCTTGAAGATTGTAAATCCATGTGCCCACCTGAAATGTTCAATGAAAACATAAGTATTCATAGT------CAAA-------------------TTATATC-------CTGTAATCTGATTATG-------CAATTCTAA----TACACACCGTAGATACTTGGAGA--AGAATAAACAGATGTTGATGGTTTTG---CGATTTTGTAAAGTTTCCAACTGAGACAGTTTAAGCAGTGCACCCCAA--CTAGTGACTGCATTGTGTAACATCTgaactcaaaaaatatattttcaaagtttGTCTTGGTTTTGGTCTTTTACTTTGACTTCAAGGAA----AATCTGCA-CATTAAGTAGCCTAGA----CTCTTTCTATACCTCTTCACAGAATTATTCTGTGAttaccttgttttctttcctct-ggtacatga---gatttttctcattttcattatgGTTCTTACTTACAGAATTACAC-----AATATGGAAAGTACATAGTATTTT----------GTATTCACTCAACATGTTGTAAAATCATTGATATTTACAATTATGACATTAAACACTTTCAACTTTCAAAATGCAGAGCAAGTCTACAAGGTGATTACTTACCTGTGCATCTCCTGGTATGCTGAGATAGGCCATTCGCGAATCAGTGTCCTGAGTGAAA----TTTGCTGTGAGTGTTCCATTAGGATCCCAGAGAGAAATGCTGGGAGGCTGTTTGGTCCAGGTGACAAGAAAGAAAGTGTCCTTTCCCACAGTGCTGTCAACTGTCACAGTGTCGTTCATCCAGGCACTAGTGTTCAGATTTAGTCCCTTACTTTCAAGCTGTTTAaagg

a score=8637
s chr3           145009625 291 + 160039680 TTTTTTTTAATGTACAATTATTTATAAAACAATTTTGTCTGGTGTGCAAGGAAGCTGACTCCATACCTTAGCCGTGCCTGGGACTTGGAGGTAGGCCACCTTAGTGGTTGTGTCTAGTATAAAACCATTTTGTTCCACTCCGCTGGGATCCCAGATAAATATTGTAGGAGGATGCGTTGTCCAGGTGATAAGAAACAAGGTGTCCTTGCCCACCGAGCTGTCCACGATCACTGAGCCATTCATCCATTGGTTATTCTGGAGATTAACTCCCCTGCTCTCCAGCTGTTGAGA
s HiC_scaffold_1 131029088 277 + 233722169 tttatttttatgttctgaaattttaaaagaaatct--------------agaaGATGACTGCTTACCTGTGCTGTTCCTGGAATACTGAGATAGGCCATTCTGGAAGCAGTGTCTTCTGTGAAACTTCCTACCGGTTTTCCACTGGGAGCCCAGAGAGAAACACTGGGAGGCTGTTTTTCCCATGTGATGAGAAAGAACGTGTCCTTTCCCACAGTGCTATCAATTATCACAGTGCCATTCATCCAGGGATCATTGTTCAGGGTTAACCCCTTACTTTCAAGCtgtttaaa

a score=22851
s chr3           145011234 778 + 160039680 TTCTTGGCATTTTAGAACCAGACAAGCCCACAG---CTTTCTGCTCCATACTTAGAGAGGCAAGGTTCTTTACTCAAGGTCAG--TTAATGGTAGACTCAGGATCAAGATTTGAAAGTCTGAATGGACGACATGGG-GTTTCCACAGTACAAAGTGCTGTCTCTCCGCTACAGGGAAGTCATAGCAAATCTTAG-GAACAAAGGCAATGAAAAAACAGGGCACATGGTATCTGCACACTTGTCCTAGAAAATGTGTA-----GATTATCTA------AGACAATGTG-AACCAATCATATTACAAAGAGAGCTTGTCCGCAAACACTTATGA-----GAACTTATTAGAAATAT----------------------------------TTACAAAATAATTAAATGCTGACTGCCTCAGTTAAACAAGGGAACTTACACTTGGAGAATAATGTTGGACATCAAGCTGAAGACTGGGATTTTCAATTAATAC----CCAAAGGAATGTAGAACTCAAAGCATCTGTCAGT------------CTAGACTGTGATTG-----------------------------TAAGTAAACATGAG-------AACCCTGACCTGGATGGAGTGCTGAGCGATCGCCGCATTTCCTGAGGAGAGTGCTGCGAAAGCATCAACAAGACCATTGTTCTGAACCTGATCCGAAGAGTATGTCTGCAGGCCTCCTAAAATGCAACCACATCATCAGAAGTTATATTTCCCGGAAGTGAGTATTTGCAACATTTTAGCTATAGCTAAGATAGCAGGATACACA-------------ATT----------------CAGATCAATAGCAAATATATGTGCATATTAACTCCAAG---------------TTGATACTAataaataaatatatatatatatgtatgt
s HiC_scaffold_1 131295410 922 + 233722169 TTCTGGAAATTTTGGAACTCTATGGGGTCATGGACATTTTCTGGTTCATAGTTCGACAGGC-------TTTGCTTATGGTCAGAGTTAATGACAGACCAAGGGCTGAAATCCAGGCATCTGAATGGACAGCATGGACTTTTCCACAATGCAAAGTGCCTCCCCTGTGTTTTACGACAATCTTGGCAAATATTAGAGATTTGAGGTAATGGAAAA-TAGAGCAAGTAATCCCTGGACACATATCCCAGAAAATTTGTAATTGAGATGATCTACCCTGAAGAAAATTCCCAGCCAATTATATTGTCATGGGTCTTTGTTAGCAGATGTTAAGAATTCTTGGACCTATTACATTTATGTTGTTGATTTCTGGAGGAATTCACTTAGTTTTATTTCTAAAGGAGTCAACATTAATTGCCTT-GTTTAGTGAGTAGTGTTGCATTTTAGGAATGATGTCTGAAATCAGACTGaaccatttattttcattttaatgcaaTACTAGAGGAATATagaacttaaaatttttaaccaTTAAATTTTGCATCTTTACTGTGATTAGATATTAACACACAAATGTACATACAAAATAAGTAAACACGAGGAGGAAAAACTCCTACCTGGATGGAGCGCTGAGCGATGGCGCCATTTCCTGAGGAAAGGGCCCCAAAAGCATCAATGAGGCCATTGTTTTGAGCCTGATCAGAAGCATATGTCTGCAAACCTCCTAAAATGCAATTACATCATCAGAAGTTAT-TTTCCAGACAGCAAGTGTTCACAACACTTTAGCTGTTGCTAAAATGAtggaatacataaaataaatatcgcatttttattaaagtaaaaacaGATCAACATCAAATGTATGTGCACATAAACTCAGAAGTGAatactaaatttttaatattaataaataaaactttagcaATATCTCTGT

a score=6865
s chr3           145011725 267 + 160039680 TGAGAACCCTGACCTGGATGGAGTGCTGAGCGATCGCCGCATTTCCTGAGGAGAGTGCTGCGAAAGCATCAACAAGACCATTGTTCTGAACCTGATCCGAAGAGTATGTCTGCAGGCCTCCTAAAATGCAACCACATCATCAGAAGTTATATTTCCCGGAAGTGAGTATTTGCAACATTT-----TAGCTATAGCTAAGATAGCAGGATA--CACAATT-------------------CAGATCAATAGCAAATATATGTGCATATTAACTCCAAGTTGATACTAataaataa
s HiC_scaffold_1 131191813 289 + 233722169 TGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCCTTATCTGAAGCcaattcctcctttcctcctaaAATGGAAATGCACAAGCA-AAgtta-atttctagaaaataagTGCTTAC-ACATTTAGTGATTAATAAAGCAAAGGTTTAAAGAAAGTCACAGTTTTCACATGTCCTATTAAAGCAGACCAGTGTCAGATAGCTGTA-AGATTAATTCTGAAATgctaatttaaaataa

a score=6320
s chr3           145011725 267 + 160039680 TGAGAACCCTGACCTGGATGGAGTGCTGAGCGATCGCCGCATTTCCTGAGGAGAGTGCTGCGAAAGCATCAACAAGACCATTGTTCTGAACCTGATCCGAAGAGTATGTCTGCAGGCCTCCTAAAATGCAACCACATCATCAGAAGTTATATTTCCCGGAAGTGAGTATTTGCAACATTTTAGCTATAGCTAAGATAGCAGGATA--------CACAATT-------------------CAGATCAATAGCAAATATATGTGCATATTAACTCCAAGTTGATACTAataaataa
s HiC_scaffold_1 131242239 289 + 233722169 TGGGAGCTCTCACCTGAATGGACTTCTGGCTGAGACCCACATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTCAGCGTTATCTGAAGCATAATAGTGATTTCCTCCTAAAATGTAAAAGCGCAAGCA-AGgtta-atttctagaaaataagTGCTTAC-ACA-TTTAGTGATTAATAAGGCAAAAGTGTAATGAAAGTCACAGTTTCCACATGTACTATTAAAGCAGACCAGTGTCAGATAGCTGTA-AGATTAATTCTGAAATgctaatttaaaataa

a score=6293
s chr3           145011728 253 + 160039680 GAACCCTGACCTGGATGGAGTGCTGAGCGATCGCCGCATTTCCTGAGGAGAGTGCTGCGAAAGCATCAACAAGACCATTGTTCTGAACCTGATCCGAAGAGTATGTCTGCAGGCCTCCTAAAATGCAACCACATCATCAGAAGTTATATTTCCCGGAAGTGAGTATTTGCAACATTTTAGCTATAGCTAAGATAGCAGG---------------------ATACACAATT----CAGATCAATAGCAAATATATGTGCATATTAACTCCAAGTTGATA
s HiC_scaffold_1 131153811 273 + 233722169 GAGCTCTCACCTGAATGGACTTCTGAGTGAGATCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTCCACAGCGTTATCTAAAGCCAATTCCTGTTTTCCTCCTAAAATGTAAATGCACAAGC-GAGgtta-atttctagaaaataagTGCTTAC-ACA-TTTAGTGATTAATAAGGCAAAAGTTTAATGAAAGTCAGCTTCCACATGTACTATTAAAGCAGATCAGTGTCAGATAGCTGTA-AGATTAATTCTGAAATGCTA

a score=5992
s chr3           145011728 264 + 160039680 GAACCCTGACCTGGATGGAGTGCTGAGCGATCGCCGCATTTCCTGAGGAGAGTGCTGCGAAAGCATCAACAAGACCATTGTTCTGAACCTGATCCGAAGAGTATGTCTGCAGGCCTCCTAAAATGCAACCACATCATCAGAAGTTATATTTCCCGGAAGTGAGTATTTGCAACATTTTAGCTATAGCTAAGA-------TAGCAGGATACACAATT-------------------CAGATCAATAGCAAATATATGTGCATATTAACTCCAAGTTGATACTAataaataa
s HiC_scaffold_1 131078566 285 + 233722169 GAGCTCTCACCTGAATGGACTTCTGACTGAGACCAGCATTTTCTGATGTGAGGGCAGCAAAAGCATCAATGAGTCCATTGTTCTGAGCCTTATCTGAAGCAGAAAATTCATTTCCTCCTAAAATGTAAATGTGCAAGTAAGGAT--AATTTCTAGAAAATAAGTGCTTAC-ACA-TTTAGTGATTAATAAGGCAAAGTTTAATGAAACTCATAGTTTCTACATGTACCATTAAAACAGACCAATGTCAGATAGCTGTA-AGATTAATTCTAAAAtgctaatttaaaataa

a score=19227
s chr3           145013522 642 + 160039680 GTAGCCCCTGGTTGTTCACCAGTCTCTTTCC---CTCTTCCCCTCTTC--------------TCCTTCCTGTCTTTCTCAGGTAA--AGCTAAATACTCATAAGGTGTCCAGGAAGGGTTC---TCTGAGTTGTCACTAGGGTGTAGCACTGTT-----ACTTCCTGCAAGCTGGCCTGGTCCTGGAACCAAGACCTTAAAGAGAATGGGTGGAGTCAGTTCTAATGGTCACATGGGA--GAAGCATAGCTACTTGGCTGAGATGAC----TCCATCTCTCCGTAGCCCACTTTTCCTGGCTCCTCAGGTCACTAGAGCCTAGGTCCG------------------TGGGTATGTTCCCAGCAGATCTTCTCTCACCTGTCATTTTGGACAGCTGCTCAAGCTCTTTAGCGGCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCATCAGTTGGATACTTCTTCTTTATCACCTAAGAATGAGATTAAGAGCAGGGATTACCTGTGTGAGGTGGCCAGGGTGTTTATGGATACTGCCTTTACATGGGACAAGAAGGAACAATTGTAGAGGGACCAAGTAGATGTCTGGGAACG-TTGGAGGAGCATCTGTCTAGT
s HiC_scaffold_1 131297410 661 + 233722169 GTAGTCTGTGGTTTGTCACCTGTCTCCCTTCAGCCTCTTGGCCACTGTCAAATGAAAGTAAGTGGCTCCTGGTTATCTGTGAGAGTCCGCTTAGTTCTTACAAGGTGCCTGGAAAGAAAACAGGCTTGAATCTTCACTAAG---TACCACGCTTGACCCATCTTCTTCAGACTTCCCTAGTCCTA-AACTCAGCTCTTAAAATAATTGGGTGGAGTTCACTCTCATGGCGACAAGCGAAGGAAGGGTAACTAGTTGGTTAAGAAGACCACCTCCCTCTTTCTTCACCCCAATTCCGGCTTCTCTCCAGTTCATGGAGTCCTCAGTCCAGTGGAAGAGAAAATGCACTGGGTCTAAACCGATCCG-TCATCCCTCACCTGTCATTTGAGAcagctgctccagctctgcagctgcagAGGGCCCCAGGGCAACGGTGTGGATTATGGCTCCGCTCTGCTTCACCATATTAAAGCACATGCTGATAGTGTTGTCCTCCCCATCGGTCAGCAGCACAATCTCAGAGCCATCTGTTGGATACTTTTTCTTGATCACCTAAGGACATGATTCAGGACATGGGTTACT----------------GGAGTGTGTAAAAcctgtctttacatgagacaaGGA-GAGCAA----------ACCCAG-AACTATGTGGGAGTGTTTGGAGgtgtgtttttcttgt

a score=6043
s chr3           145013834 209 + 160039680 GATCTTCTCTCACCTGTCATTTTGGACAGCTGCTCAAGCTCTTTAG--------CGGCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCATCAGTT---GGATACTTCTTCTTTATCACCTAAGAATGAGATTAAGAGCA
s HiC_scaffold_1 131032226 212 + 233722169 GATCATAATTTACCTGTTAT--------ACTGCTCATCACACTTAGTATGGGATCAGCAGAAGGCCCCAAAGCGATAGAATGAATAATGGCCCCGCTTTGTTTCACTCTGTCCAGGCAAGAACTTGCACTGTTACCTTCCCCAGCAGTTACCAGTATTATTTCAGATCCTTCTATTTGATGATGTTTTTCCTTAATTACCTACAAACAGAATTCAGGACA

a score=6119
s chr3           145013840 191 + 160039680 CTCTCACCTGTCATTTTGGACAGCTGCTCAAGCTCTTTAGCGGCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCA-TCAGTTGGATACTT--CTTCTTTATCACCTAAGAATG
s HiC_scaffold_1 131079290 194 + 233722169 cTTTAACCTGTTTCAATGCTCATCTGTGTGACTGCTGGATCCGCAGATGGTCCCAAGGCAATAAAATGAATGACGATCCCGCTTTCTTTCACTTTATTAACACAATTGCTTGCACCGTTGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAATG

a score=6239
s chr3           145013841 188 + 160039680 TCTCACCTGTCATTTTGGACAGCTGCTCAAGCTCTTTAGCGGCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCAT-CAGTTGGATACTT--CTTCTTTATCACCTAAGAA
s HiC_scaffold_1 131242992 191 + 233722169 tttaacctgTTTGGTTGCTCATCTGTGTCACTGCTGGATCTGCAGATGGTCCCAGAGCGATTAAATGAATTATGACCCCGCTTTCTGTCACTTCATTAACACAGTTCTTTGCTGTGTTGTCTTCCCCATCAGTCAGCAGCACTATTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAA

a score=6754
s chr3           145013843 191 + 160039680 TCACCTGTCATTTTGGACAGCTGCTCAAGCTCTTTAGCGGCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCATCAGT----TGGATACTTCTTCTTTATCACCTAAGAATGAGA
s HiC_scaffold_1 130985232 194 + 233722169 TTACCTGTCATATTTGACAGGATCTCTAGTTCTTTGGCAGCAGAAGGTCCCAGAGCAATGGTGTGGATGATTGCACCACTTCGTTTGACCTCCTCGAAGCATGAGCTTATCCCATTATCTTGCCCATCTGTTAGCAATATGATTTCAGAACCAGATGTACTCTGGTTAC-TCTTGGTAATTGCCTAATAGTAAAA

a score=5972
s chr3           145013882 149 + 160039680 GCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCA-TCAGTTGGATACTT--CTTCTTTATCACCTAAGAATG
s HiC_scaffold_1 131116880 152 + 233722169 GCAGATTGTCCCAGAGCAATAAAATGAATGATGACCCCGCTTTCTTTCACTTCATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACG

a score=6036
s chr3           145013882 149 + 160039680 GCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCA-TCAGTTGGATACTT--CTTCTTTATCACCTAAGAATG
s HiC_scaffold_1 131154722 152 + 233722169 GCAGATTGTCCCAGAGCAATAAAATGAACGATGACCCCGCTTTCTTTCACTGAATTAACACAACCGCTCGCCGTGTGGTCTTCCCCATCAGTCAGCAGCAGTATTTCAGACCCACTCAACTGGAAGCTTGCATTTGTAATCACCTGCAAACG

a score=5866
s chr3           145013882 147 + 160039680 GCAGCCGGTCCCAGGGCCACTGTATGGATGATGGCCCCGCTCTGCTTCACCAGGTCAAAGCAGCTGCTAATGGTGTTGTCCTCCCCATCGGTCAGCAGCACAATTTCAGATCCAT-CAGTTGGATACTT--CTTCTTTATCACCTAAGAA
s HiC_scaffold_1 131192733 150 + 233722169 GCAGATGGTCCCAGAGCGACAAAATGAATGATGACACCGCTTTTTATCACTTCATTAACACAGTTCTTTACTGTGTTGTCTTCCCCATCAGTCAGCAGCCCTACTTCAGACCCATCCAATTGGGGGTCTACCTTTCTAATCACCTGCAAA

a score=50399
s chr3           145015473 1818 + 160039680 CTGTATCTCTATACCCTTC-CATCACCTCGTTGTCCTGAGTCATATAATTCAATCTGACACCAGCCATGCGTGGAAACTCTGGAAATGAAAATTTCATAGGAGTAAAAGATCACAAACAGTTGCAAACCACAACAATGGAGCACGCCTTACTGTAAATGCTGTCCGAAGGCCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGC-AGATAAAGGCAGTCAAGTTGGCCCTTAAATAAACAGACTAACACC--ACCAGGTTAAGGAGTATTTAGAAGTGGCTGCCT-----CATAGTAAGTGTGGACTTAAGCCGTATCCTTTTATGGTAGATATTTTCCATTTATGCCTGGCATTTACTTTTGGGTAAAATTTTAGAGTTGTTACCTAAAGAGCAAAAGGCAAAAAGCTATCTTACATAATCCCTGCAATACAGTGCATTGGTAAGAGGTCTAAATAAGGCTTATATGGAAATCTAGGCCTA---------GTTATGGTAGCAAAACATGAACAACATTAAGTTTACATAATTAACCAGAACTTTGCTCATGAGTTGATGTTATTTTAATTTGACAAAGGGGACAGTTGATACTGAGTCTGTGGAATGACGTGATGTGAGCATCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtTTCTCATCACTCAGAgctggctggtcaaagagccacagggatttgcctgtctctacttgcccagcactgctagaatcacaggtgagtttggggccttgaactcatgtccttaggcttgcaaggcaagcaccttacctgctgagctatctctccagcccAAGATGGGCATTTCCAATGACAAAGCTATTGC--TGGGTTTGACCCTCCTGTTGTGTTTGTTCTCTATCAAGTCCAAATTGTGGTCCTGGTCCAGATTGTATCATTCACACATCTATGATCCCCGTTTCAAAGATGAAGGCTCAGTGAACCTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTCATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAATTGCCAATATAATGATACATATAACAGCAATCAATGTACTCATTAACACATCTATCAAAC----CAATCCCCCAGTCTCTGCACTCCCAGGCTTGTCTGCTGGCTTATAACCGTGGCGCAGCCTCGCAA-TGGTGCCTAGGGAGGCTGGGAAAATCTTAGTC------TGCAG--CCTGGCTCAAGCCTTGTCTTCAGCCTTATTGGACCTTTTGTGCTGTTCCACAGCGAAGGTCTGCCTGCTGTAA--GGTTCTCTACCT---------------------GAGATGTCACCTTTCT-------TCACCCC-----GCACTCTTC----AGTACGATCTTCTCTCTGCACCCTCACACCCACAAGCTCCGTTCCTGGACTTTCTGAACCCCATTAACCGACATGCTGCCTT-CAACCTTAGACAGGCGTCATCCCAGGTCTCCCTAGAATTCATCGGTGGACCTG
s HiC_scaffold_1 131300481 1689 + 233722169 CTGTGTCTTTGCATCATTTGAAGCATTGCTTTGCTCTTGGTTGTCTAATTCAAATAGACACTGGCCATATAAGGAAAC-------------ATTGCTTAGAAAAAAAACATGGCAAACACTGGCAAACCACAATAGCAGAGCATATCTCACAGTAAATGCTGATTGAAGGCCGGAGCAGATGGATGTCCCTCCTGAAGAAACTGTTGGTAAGTGTTTGGTGAGTGCATCTCTGTCTGCATCACTCTTTATCTGGACAAGTTCACTTCGTACTTGGGCGCTACCGTCAAATGTTACCAGCCCAACCCAGGACCTGTCCTCCACCGTCTGCAGCAGGAAAAACTTGGCCGCTTGATTCATGCGGTCAAGGCGGTTATCACTCTGGATGgacaagcaaaagaaaagcaatcaagTTGG-ATTTAAACGAACAGATTGATTACTGAACAGGCGAAAGGGTATTCTGAGGTGGCTGCTTTGAGATACAGTAAGT---GACTTG-----------CCTGAGGCA---ATTTTCCATTCATATTTAGCa-gcatttttacataaaa-tttagtaCTTTTGCATAAATAGCAAAAGGC--AAAGCCAGATAACATGATCATTA-AGTACAGTGTTTTAGTGATAGTTCTGGATAAGTCCTGTATAGAAGTATAGACCTGTAGACCTATATAATGtcagtaaaacattaaaaacatgaaGTTTATCTAACTAATCAGATCTTTGCTCAcaaattaaaactaatttaatttggaaaatgaaaCCGTTGATGCCAAATCTCTG---TGAAATGAAGTGGgcatt-------------------------------------------------------------------------ttttttat--------------------------------------cctttctcctttt-----------tttggaCCATGG-------------CCCGAACtc-cgaccttgcacttgccaggaaggcgcttatgccacagagctaaatccccagcc---agtggGCATTTCTGATGGGAATGTTATTGCAATTGTTTTAAGTTGGGGGTTATATTTATTCCCAACCAATTCAAAGTTG------TGGTCCAGATCATACCAT--ACACATTTATGAGGGGCATAGAGAAGACCGGGGCTCAGTGAACATACCGCCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGGGTTTGTTGTCATAGGAGTGGTTTTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAATTGTCAATGAAATGATATAGTTAACAG----TAAAGTACTTATTAAAATAAGTATCTCACAGTTtaaattcctgttttttt--ttcccagtctgcCTTGCTAACCTATCACAATGATTCAATATCACAACTACTACAGACGATTCTTGGGTGCATCTTAGCCATGGTTTGGAGATTCTACCTCACACCATGTCTTCAACGTCACTGTACCCTTATTGCTTCTCAGAAATCCA--TTTCCCTACTGTAAGTGGCTTCCTGTCTAATCCTCAAACTTGCTGTTCCAAGTTCTCACTACTCTCTTTGTATCACCCTTTTCGGCATTCCTCTCCTGGTACCATCTTTTCCTCCCA-CCTTGTACCATTAGACTTCGCCTCCTTACTTCCCA---CTTATTGGCCAGTACCCTTCATTCCAACTTTCAACA----TCATTTCAGCTCTCCATGTGGCTCTGTGGTCCACTTG

a score=7384
s chr3           145015619 311 + 160039680 TTACTGTAAATGCTGTCCGAAGGCCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGCAGATAAAGGCAGTCAAGTTGGCCCTTAAATAAACAGACTAACACCACCAGGTTAAGGAGTATTTA
s HiC_scaffold_1 131118550 299 + 233722169 TCACCTCAAATGCTTTTGAAATTCCAGTGTAGGTGGAAGTTCCTCTGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTTTTTCGCTGTTGCCTGTTATTTGTATTAATGTACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTAATTCATTCGAATGAGGCGGctatc------aaa----aagcaaaagaaaacaaccaagtAGTTTTCAACTGGAAGATAATAGCATCACACA--TAATGAGTATATA

a score=7882
s chr3           145015619 262 + 160039680 TTACTGTAAATGCTGTCCGAAGGCCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGCAGATAAAGGCAGTCAA
s HiC_scaffold_1 131156838 261 + 233722169 TTACCTCAAATGCTTTTTTAATCCCATTGCAGATGGAAGTTCCACTGTTAGCTTGTGTAGGTAAGCTCTTCATCATGGTATCTCTTTCGCTGTCGCCTCTTATTTGTATTAACTGACTTTTAATGTGTGCAGTAAGGTCAAATTCAACCATTCCTACCCAGGATCCATTTTCCACAATTTGCAGCAAGAAAAATTTTGCTGCTTGATTCATTCGAGTGAGGCGTTTATCAAGctgaataaa-aagcaaaagaaaacaaccaa

a score=8632
s chr3           145015619 316 + 160039680 TTACTGTAAATGCTGTCCGAAGGCCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGCAGATAAAGGCAGTCAAGTTGGCCCTTAAATAAACAGACTAACACCACCAGGT-TAAGGAGTATTTAGAAGT
s HiC_scaffold_1 131244757 313 + 233722169 TCACCTCAAATGCTTTTGCAATCCCACTGCAGATGGAAGTTCCTCCGTTAGCATATGTAGGCAAGCTCTTCACTAGGGTGTCTCTTTCAGTATTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAATTTTGCTGCTTGATTCATTCGAGTGAGGCGGCTACCAGCCTGAATGAA-AAGCGAAAGAAAACAACCAAGTAG--TTTTCAACTGGAAGA-TAACAGCATCACACATAATGagtatatacatgt

a score=8586
s chr3           145015619 264 + 160039680 TTACTGTAAATGCTGTCCGAAGGCCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGCAGATAAAGGCAGTCAAGT
s HiC_scaffold_1 131194403 263 + 233722169 TCACCTCAAATGCTTTTTCAATCCCACGGCAGATAGAAGTTCCTCCGTTAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCGCTGTTGCTTCTTACTTGTATTAACTCACTTTTAATGCTTGCACTACTGTCAAAGTGAACCATTCCTACCCAGGATCCATTTTCCACAGTCTGCATCAAGAACAGTTTTGCTGCTTGATTCATTCGAATGAGGCGGCTACCAGCCTGAATGAA-AAGCGAAAGAAAACAACCAAGT

a score=9918
s chr3           145015619 313 + 160039680 TTACTGTAAATGCTGTCCGAAGGCCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGCAGATAAAGGCAGTCAAGTTGGCCCTTAAATAAACAGACTAACACCACCAGGTTAAGGAGTATTTAGA
s HiC_scaffold_1 131081415 311 + 233722169 TTACCTCAAATGCTTTTTCAATCCCAAGGCAGATGGAAGTTCCTCCGAGAGCTTGTGTAGGCAAGCTCTTCACCAGGGTGTCTCTTTCACTGTTGCTTCTTATTTGTATTAGCTCACTTTTAATGCTTGCAGTACTGTCAAAGTGAACCATCCCTACCCAGGACCCATTTTCCACAATCTGCTGCAGGAAAAGTTTTGCTGCTTGATTCATTCGATTCAGCCGGTCACTGCCctgaatgaaaaagtaaaagaaacccACTAAGTAGTTTTGAACTTGAAGATAATAGCATCACCC--CTAATGAGTATAAAGA

a score=7188
s chr3           145015642 235 + 160039680 CCAGAGCATATAGATGTCCCTCCTGCAGATACTGTGGGTAAGTGCTTGATCAGCAGATCTCTGTCAGCACCACTGTTTAACTGTTTGAGTTCGCTTTGTACATAGGCAGCACTGTCAAAGGTCACCATCCCGACCCAGGATCCCTGCTCCACAGTCTGCAGCAGGAAAAGCCGGCTTGCCTGATTCATTCGGTTAAGACGATCATCGTTCTGAAAGGGTAAGCAGATAAAGGCAG
s HiC_scaffold_1 131032644 235 + 233722169 CCAGAGCAGATAGAAATTCCTCCTGAAGCTTCTGTAGGTAAGCTCTCTAgaagttttcttctttcattgtAGCTAGTTACTTGGACTAGCTTACTTTTGATGTGAGCGGTACTATCATAAGCAACTATTCCCACCCAGGAACCATTTTCAACAGTTTGAAGCAGGAAAATTTTAGCTGCTTGGTTCATTCGATTTAGCCGGTTTAAATCCTAAATGGTGAATCACAAGAAAACAG

a score=12461
s chr3           145016577 312 + 160039680 TGTGGTCCTGGTCCAGATTGTATCATTCACACATCTATGATCCCCGTTTCAAAGATGAAGGCTCAGTGAACCTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTCATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAA--TTGCCAATATAA
s HiC_scaffold_1 131085561 302 + 233722169 TGTGTTCCTAGC----ATTTAACTACTTCCACTGCTATG--------CCCAGAAAAATAGGCCCACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatga

a score=11750
s chr3           145016587 290 + 160039680 GTCCAGATTGTATCATTCACACATCTATGATCCCCGTTTCAAAGATGAAGGCTCAGTGAACCTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTCATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAA
s HiC_scaffold_1 131199199 287 + 233722169 GTACAGCATGTTCCAGTCAGTTATCTCCATTTCTAATCTCAGAAAAAATGGGCCC---AACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATAGGTGTGGTGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAA

a score=11653
s chr3           145016591 286 + 160039680 AGATTGTATCATTCACACATCTATGATCCCCGTTTC----------AAAGATGAAGGCTCAGTGAACCTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTCATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAA
s HiC_scaffold_1 131249545 290 + 233722169 AAAGTACAGCATTTTCCAGTCAATTATCTCCATTTCTACTCCCAGAAAAAATG--GGCCCA----ACTTACACTCATGCTTCCTGACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGTGTCTCCATCGCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAA

a score=11584
s chr3           145016623 310 + 160039680 TTTCAAAGATGAAGGCTCAGTGAACCTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTCATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAAT----TGCCAATATAATGATACATATAACAGCAATCAATGTACTCATTAACACATCTATC
s HiC_scaffold_1 131034813 311 + 233722169 TCTTAAGTATTAAGTCCCACAATACTTACCTTCATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGGTGGTGCCACCATAGGTGTGGTGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAAGGTTAATatgataaaagattttaaaattatc---ttgtcCATTTAAAAATCTATC

a score=12036
s chr3           145016626 281 + 160039680 CAAAGATGAAGGCTCAGTGAACCTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTCATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAA--TTGCCAATATAATGATA-CATATAACAGCAA
s HiC_scaffold_1 131160930 284 + 233722169 CAGAAAAATAGGCCTACTGAACTTACAGCCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGGTAGTCCCTTCATCGGTGTGGTGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGGttgacaaaatgaaaacatcattttgCTGCAA

a score=6163
s chr3           145016648 229 + 160039680 CTACCAGCATGCTCCCGGACTTATCAAGAACTAAGCACACAATTCTTTGTCCAATTTGCAGCAGTGAGAAGGTGGGTGCAGGTGGCTGGGCTGTC------ATGGGAGTGGTTTGCTTGAAGTCCTCAGATTCCTGGATGACTTCCCACGTGCTTCGGAGATTGCATCGTTGGTTTTGGTCATTTGGGGCTTCTTGATTGTGATTTTTTTCTGTACAGAATTCAACCACCTGAAA
s HiC_scaffold_1 131343058 232 + 233722169 CTGCCATCTTGCT---AGATACATCCAGCACTAAACAGACCACTTTGTCGCCATCCTGGACAACAGAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGGGATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAA

a score=17315
s chr3           145018460 1189 + 160039680 TCTAAAACTCGTTCTTCCCTTAGAACACCTGGGCAAAACAAAAACCGAACCATCCTCACTGAATTTATGCAAGCGTGGGGGAAAGAAG-AAGGCACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGACGAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTGAAAAATACATGAAGGTTAAATGTGTGGGCAACGT---------AAAGGGTCTGCTACTCACCCGAACTTTCTGACTTCTGTTGGCCTTCTCTACGATTCTTTTTCATTAAACCAAGGAGAATATATATCTCCTCATATACCAACAGCACTACGTTTACATCAAAGTCATT-TCTG-TTGCCAGAAAGAACCAGAGGAGGTCCAACCATAGTACGAGAAGA------GCGTGACTTAGTGTCGAAGTCCATAGGTGCTCCAATCCAAGCCCCTCCCCCATTCTAGGAAGCCAAGCCCCTCCCCCATTCTAGGAAGCCAGGAGTCCGCTTAG-TTTCCCCACAAGACTTGCTGACATCACCGG--------TGTTTGTCCTAATTGTTTTTATTCCAAAGTCTTTTTGAACAGTGATTGTATGTTCATTGACATTTAAGTTTTTATGTTAGATGCTTATGGGTTTT--TATCATGAGTGGAATCCTCTTCCCCATGTTTCCCTTTTAATCCACAGAACTGAGTCTATAAATAATAAAAACATCAAAGAATACTTGAAAACTCATGAAACGAAGAAAAAA---AAGAAAAAAAAATGGTTCACCATCAGAAATAAA-CAATGT-------CTGG-----------CTTGTTTTCTGTGTCAACATAACAGTGCTT-------TGTTTTCTGACTTAAAATAATGTATAAAAGTAGCATATT-TAAAGTA----TTAACATATACACATGCAGCAATTCTTGCATAATGT--GGTTTTAATG----------------------------ATTTTTATTTTTTGGTGTTATA---TAAGTCCATCCTAACTTACTAAATTTTCTTTTTCTTTTAATTTTTTTTGACACCTAACATAAACACGTGGCAAACACATCAAATACCACGTGGAAATTTGCCCGTGTTT--------------------------------------------TAAAAAT---------------CTGTTGCTAGGACTTG-TCTATCATTTGCTTAAAATGGAGCTTTAAACATGAAAT
s HiC_scaffold_1 131304122 1238 + 233722169 TCTGGAATTTGATTTTCCCC-AGAGCACCAGGGAAAAAC---------------CTCATTAAGTTGGTAAGAgcctgggagaaaaaaataaggtaCTTACAGACTCAATACTTTGTGCAAACATTATGGAAGCCTTTGCAATCTGTTGCTTCTGTGGTATCAGCACACATTCTTTATTATACAGTCCTGTTAATTTGTTGAGTCTGCATGGTCC---AACTGTACAACTGCCTCCCTGGCACTTAATTGTTTTATATTGTCCGGTAATATCTGTTGAACATCTGAAAA--GAGTTATGGTTAGATGTTTAGACAATGTAATCATTTCAAAGGGGTAGATTATGGTCAGTGGCTGATAAATT-------GCTTGTCTATA-----TTTTC--TAATTCAAGAAACAAATACATTCCTTCAGATAGCAAAATTACTGAATCTCCATTGAAGTGATTGTCTATTTGCTAGAAAGTATCAGAATTTATTTCTATGCAGCAGGAAACTAAGTCTGGCTAGAGTTGATATCAGCATCAATAAG------GTTCTGACTTTCGCCACCTTCTAAACAATTCTAGTTCCTC----------AAAAATCAGGAACCCTCTTTGTTTTCCCCAAAAGATGTGCTGACATTTCCTGCTTATTTTTGCCTCTTCCAAttg-gtttatttcata-cagttttgCATAGATCCTTTATATTCA--------TGAGT-------TTAAATGCTTATCAATTTTGGTGTTATAAACTGAATTTTgtctcccatcttt-ttttttaat-tatagtttTGATTATATAAACaatg--------------------------cataaagaaaaaagaaagtccaAGGGAAAAAAGTG--TCACCGTCAGAAATAAAGCACTGTTAACATGCTGAATCACTTCCTTCTCATTCTATGTATCAGAGTCATATTGCACACATAAGTattctctgcttttaaaaaacttGGTACATTAGTAAATTCTAaggtaaattttaatatata-------atttaatattatataatattaaattttaatgtataatacTTTCAAAAATGTGTTTCTATACCTTTATCTTTTAATACTATAATGTGAATTCAGCAacctttatttaatttaatttctcccCTAA--CTTGTCAATACTAAAAATAGAAgattaatgaataaacaaaattttacatgAAGTTTTGATTGTATTTGCAAGTTTGTAACACAATTAATTCCAAGGGGAAATTATCAGATctaaaacttaaacattttatAGCCTGTTCATAAGGCTTGTTCTACTATTTCTTTAAAGTGgatttttaaacatgaaat

a score=7022
s chr3           145018536 242 + 160039680 GGGGGAAAGAAGAAGGCACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGACGAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTGAAAAATACATGAAGGTTAAATGTGTGGGCAACGTA
s HiC_scaffold_1 131199893 238 + 233722169 GGAGCCAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCCGGAAAGAACTGACAATCTTTTTCATACAACTTTGTGGTAGAATTTGTTCTGCAATTTC---TAGTTGAACAGCTACCTCCTTGACACTTATAGACGCGGTTTTTCCCAGAGATACTTGCAGAACACCTG-AAAATACGTGACAGTTATTCTTTGAGGCAACTTA

a score=7406
s chr3           145018536 242 + 160039680 GGGGGAAAGAAGAAGGCACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGACGAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTGAAAAATACATGAAGGTTAAATGTGTGGGCAACGTA
s HiC_scaffold_1 131250240 238 + 233722169 GGAGCAAAGATTGACACACTTACAGAATCAATACTCTGCATAAACATTATGGAAGCCTTTTCTGTTTGAACTTTATCTGGAAAGAACTGACAATCTTTTTCATACAATTTTGTGGTAGGATTTATTTTGCAACTTC---TAGTTGAACAGCTACCTCCTTGACACTTATGGACGCTGTTTCTCCCGGAGATACCTGCAGAACACCTG-AAAATACGTGGCAGTTATTCTTTGAGGCAactta

a score=5162
s chr3           145018547 196 + 160039680 GAAGGCACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGAC---GAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTG
s HiC_scaffold_1 130991894 196 + 233722169 GAAGGCACTTACTGAATCGAGGCTTTGCATGAACATTATCGAGTCTCTTGCGGTCTGGGATTTGTCTGGGATAAATGTGCATTTTGCTTCGTAAAGTCCTGTCTTGGAGTCACGTCTACACGGCC---TTGTTATACAGCTGCCTCCCTTGCATTCATTGAAAACCACATTCATACCAGTAATGTGAGTGGAGCATCTG

a score=6739
s chr3           145018553 226 + 160039680 ACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGACGAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTGAAAAATACATGAAGGTTAAATGTGTGGGCAACGTAA
s HiC_scaffold_1 131035381 222 + 233722169 ACTTACAGATTCTATATTTTGTGTAAACATTATAGATGCCTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATACAGCTTCGTGGTAGAATTTATTCTGCAGTTTC---TAGTTACACAGGCACCATCTTGACACTTATAAACACGGTTCTTACCAGAGATACCTACAGAACACCTG-AAAATATGTGACAGTTAATCATTGAGGCAACttaa

a score=6228
s chr3           145018553 217 + 160039680 ACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGACGAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTGAAAAATACATGAAGGTTAAATGTGTGG
s HiC_scaffold_1 131086263 213 + 233722169 ACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCCTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTC---TAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTG-AAAATATGTGACAGTTAACTTTTTAG

a score=6239
s chr3           145018553 217 + 160039680 ACTTACAGAATTGATATTTTGGTTAAACATGATGGAAGCCTTCTCGTTTTGGTGTGGATCTGGTACAAATACACAATTGTCTTTATACAGTCCCGTTACTCTGTCGATTACACACTTTCCGTTAGTGATACAACTGCCTCCCTGGCACCGACGAACTTGATTTTTACCGGTAATGGCTGCTGAACACCTGAAAAATACATGAAGGTTAAATGTGTGG
s HiC_scaffold_1 131161598 213 + 233722169 ACTTACAGAATCAATACTTTGCATAAACATTATGGATGCTTTTTCTGTTTGAACTTTATCAGGGAAGAACTGACAATCTTTTTCATATAGTTTCGAGGTAGAATTTATTTTGCAGTTTC---TAGTTATACAGCTACCTCCTTGACATGTGTAGACTCTGTTTAACCCAGAGATACCTGCAGAACACCTG-AAAATATGTGACAGTTAACTTTTTAG

a score=10633
s chr3           145024342 396 + 160039680 TACCAAGTAGGAAACTCAGTTAACAGAACCACTTGTAAGAA---AAATTGGTCATTTTGTAGAAACATAAAGAGTGTCTTGGAGATCAAAAAATGAGACAGAAAA------CTAGTATTTTAA--AAGCAATTCCAGGAAAGTTTGGTTGCATTTTGGAATCGTTTTGGTGATACAAAGTCAGAAGATGCA-TACCTCACTGCTTGGGGTTTTCCTTTGGATAAGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAAAA-GTCAAAGAGCTG---AAGATAATAAACGGGAAATAGC---CCCACACAAGAAAGAACC--TTCCTCTAAATGCTTATTTTGCTTTGCTACATTATAGTTTCT
s HiC_scaffold_1 131308618 384 + 233722169 TGCAAAGTAgataatttaattaat--------ttgaaaGAATTCAAAGCAGTGATTTTGTAGACAT-CAAAAAATGCACTG------AGAGAATGAATTAGAGAAAATAGgctgatttttaaagtaattaattcTAGAAGAAAGGAGCTACAATTTAGAATAGTTTG--------------AGAAGATGAAATACCTTACGGCTTGAGGTCTTCCCCTGGATAAGTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACATTTCGGTTACCTGAGTAAAATAAGAATGGTAAGATAACTTTCTTGCAAGAGCAGAAAGCAACACTTTCAaatgttttttatgttttg----attttatttttt

a score=5303
s chr3           145024488 154 + 160039680 GAATCGTTTTGGTGATACA--AAGTCAGAAGATGCATACCTCACTGCTT--GGGGTTTTCCTT-TGGATAAGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAA
s HiC_scaffold_1 130993972 159 + 233722169 GAAACGTTTTGAGAATAGATTAATTCAACACAATGATACCTTGTTGCTTCAATAGTGttctttctggaaaaataaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGAGAA

a score=4056
s chr3           145024493 149 + 160039680 GTTTTGGTGATACAAAGTCAGAAGATGCATACCTCACTGCTTGGGGTTTTCCT---TTGGATAAGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAA
s HiC_scaffold_1 131088140 150 + 233722169 GTTATGTTAAGAAAATGTAAGTAGC--CTTGCCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaaa

a score=5126
s chr3           145024501 145 + 160039680 GATACAAAGTCAGAAGATGCATACCTCACTGCTTGGGGTTTTCCTTTGGATA----AGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTC--TGGGAGACAAAAGT
s HiC_scaffold_1 131346652 150 + 233722169 gatttaaaaatgaaaagcactcaccttgttgctttaa-ttttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGTGGAAGAGAGAAGT

a score=4862
s chr3           145024520 132 + 160039680 CATACCTCACTGCTTGGGGTTTTCCT---TTGGATAAGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAAAAGTCAAAGA
s HiC_scaffold_1 131037374 135 + 233722169 catGCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAGGGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAAACATTTCGAGA

a score=4113
s chr3           145024522 120 + 160039680 TACCTCACTGCTTGGGGTTTTCCT---TTGGATAAGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAA
s HiC_scaffold_1 131251860 123 + 233722169 TACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaa

a score=4113
s chr3           145024522 120 + 160039680 TACCTCACTGCTTGGGGTTTTCCT---TTGGATAAGTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAA
s HiC_scaffold_1 131201518 123 + 233722169 TACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaaa

a score=4406
s chr3           145024554 88 + 160039680 GTAGAACTTCTCGTCGTTGTTGTATTCATTAAACACTCCCCATCGGAAGTGAGCCCACTCATGGACAAAGGTCCTGTCTGGGAGACAA
s HiC_scaffold_1 131163446 88 + 233722169 GTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaaa

a score=27952
s chr3           145026985 1825 + 160039680 TCGCCATCTGGTGGCTATCATATGAACTGCAGGAAGTCAATCTAATTTAGTCAGGTGAGGCC-CATAGATCAATCCATAGAAGTCTAATGCTTCAGG-----CCAAACAGTTTTACTGCAATTGCCTGGCACTATAGTATTTCATAAATCCAAAATT-----CAGGCACACAAACAAA-TGTTAAATTATAGTTCAGAAATACATGTCTCTGATTCTTTGCTTTAAATGAAAAGCTATGTTTAATTTCTAGTTTGTCATCTTCAGGCTTGCTTAGAAAGAGAATACA-----GTATTTA------AATACAGTTGATGTGCTG---------------------------ACTCCA-TACCTTGTGGCCCATACTGAGTCAGCTTCTTTCCTGCTAAGAAGTCAGGAGTCAGGTGAATCCTGATCCCCTTTTCTCCACATGCTCCTATATGTTCGGTGTAGGGCTCATCATTGCCTAGAGGGCTGGTTGTTGATACAAGGACATCAGCCTGAAATACAATAAAA-------TATGATCATACCATTTCAGCAAACAAATTGGCCTTACTCACAATTGGCAGATTTTGCCACAATTTCATTTCGTTCTTCACTATTTCCCCTAAAAcaaccaaccaaccaaccaaccaaccaaccaaccaactgaacaaccaagcaactgagcaattgaccaaacaaacaaacacacacacaactgatcaactaacgaaatgaccaaccaaccaaaccaccaatcaaccaaatcaccaaccaaccaaacaaccaaccaaacaaccaactgaacaaccaacagaacaaccaaacaaccaaatgaccaaccaaacaagccagcaaccaacaaaccaaacaacagaccaaacaaacaaccaGTAGATCACAGAAGA--TGTAATAGATGTAAAAAAAAAAAAAAACAACTTGTT---CTCACGTTTTTGAAGGTTTCAAGTTTTGGCCTCGTATATTCAGGCTTTGCCTTCCAGCTCTCGGGAATCAAAATGGCAACATTTTTGAAGTAAAATCTTTTTCCTGTAGCTTCAAACAGGTATGGAGAGGCCTGAGTCACCATGTCCTGAGAGGAAAGAACACG----CTTAACAAC----ATCACTGAGGACAGATTGAGTTACGATGAATCATTTCAAGATGCATCTGTATTTT-CCTTTCAAAAGCCTAGCTAGGCAGGGGA--------CATGGCTTCCTTAATAA----CAGCAAGCAATCTTTCTGAGTGTTGATCACAC---------CACAGAGCAATGGTGAGCAACACAGACTCTGAAGGCAGATGCTAATCCTGGCTTAAGCTCTTGAGAGCATTAGACACTTTCCAGTTATAAGCTCGGATTTCACCACTTATAGCCTGGGAAATGTCA---TGACTACTTCACA-----------------AACGACATCA--CACAAGTGACCCTAGGAAGAATGCTTTCTTAGCAC-------TAGTTCTTACTGTCATCTGGTGCCTTCATTGCATTTGATCCTTTGGCCATAAATAAAACTT----AGAGAAACTGAGAACTGGGGATATAATTCTCCAAGCCTTAGCACACAATCAATGGTGGAGAGAA-----TATGA----GACCTTTACC--TGCTGAATCTCATAACAGTTAAGGCA------------------------AATCGAATGTTACATGTTAAAGTAACATTCA-TTTTAGTATAGTATTAAGAGTTAGACTTAAGGAAACAGCATCATTACGTATTTGCAAATTGTGCATAGCTATATTTCTCAGAAATGAAGGAACACCAGTAGCAGGTGCCCCTGCAGGCTC----------ATTGTGACCAGTGT---ACAGATGATGCTGTAGAAA-----GAAGGCATTGTGCCAGCCAGGATTGAGACTTAGCATTGACA-AGAAAAGAAAAGAACCCTGGTGCTCTGAGATGGCCAGGGGATGAGCCTCAATGCAAAGAAAGGAG
s HiC_scaffold_1 131310558 1643 + 233722169 TCGCCCTCTGGTGGCCACCATCTGAATTGCAGGCAGGAGGTTTCATTTAG----GTGATTtctcacagatc----tacagaaaccTAACACTACATAGTGTATTAAACTGTTTCATGGTTATAACCTGGCACAATGATGCTTTCTAAACCAAAtattatatttacacatatatacaaaataataagtTATAGATGAGGGACGTTTTGTTCTGAAT------TTTACATGAAAAAC-ACGTTT---TGTCAGGTTATATTACATGGGCTAATTcataaaaaaaatactattatgtattcactttgaaaaataattattggaCTGTGAGTGATATAGTAGAACATTTTATCCATGCCAATACCTTGTGGTCCGTATTGCTTCAATGCCTTTCCCGCTAAGAAGtcaggagtgagatgaatctTTTCACCTCTTTCTCCACACTTTCCAAACTGCTCGGTATAAGGCTCATCAGTACTTAGTTGATTAGGTTCGACCACAA---CGTCTGCCTGAAATTTTAGAAAAGCTTTTTTATCATCACCACATTTCAGTAACCACACTGA---------------------------ACAGTTGCATTTGG------------------------------------------------------------------------------------------------------CGCAGAAGTATTTGACTTAAGAAA------------------------------AATC-----------------------------------------------------------------------------------------------------------------------------TAGGTCAAAGAAGAAAggtaat---tttgaaaaaagaa--------cttGGTATGCTCACATTTTTGTAGGTCTCAAGTTTTGGTTTCGTATACTCAGGTTTTGCGTTCCAGTTTTCGGGAATCAAGATGGAAacacttttgaaataaaatcttttttctgttgCTTCAAACAGGTATGGAGATGCCTCAGTGACCATgtcctagaaagaaagaaaacatacccAAAACAACAATTATGACTGAAAAAGGACCAGGACAC---CAATCATTTAAATTTATACCTCTGTTTTACCTTAGGAAAGATGAGATGGGAGGGGGAAATGTGGCCATGCTTTTATTAATAGTTTCTAGCAGCTAGACTTTCTCGATATTTACCACATACTCTGTGATACCATGCAGTGGTGAGCAATTCAGATACTAGAAGCAGATGCTAATCTTGGCTTAACTACT------CACTGGACACTTTCTTATCCTGAGTCCTAACTATCCTGTTTATTAAACAGGAAATATCATAGTGACCAGTCAATAATGTTGGAGTGAGGAACAAAGAAACCAGGCACACGAAGTGTTAGCAATGATGTTTTCTTCGcacaaataaatgtttattaaactcACCTAGTGGTTCTGTGGCATAACCTCTCTTGGCAATCAGTGAACATTTCAGGGAGAAACTGATA-----------------------CTTAGCAAA----CAGCAGTGGAGAGAAATTCTAATGAGTATGACCTTGACCCTTACCACATCTTGTAATAATTTTGGCATTTAATACCAAGTTAACTTAATTTAGTTTAATACTGCAGGTTGTGGTAGCTTTGAGCTTTAGTATAGTTTAAGGAAGTAGATACAGGGAGATGGCATCatgacatatttttaagttacatGTAACTTTATTTCTCTAAAATGAAACAGC-CCAGTGTTAAACGCGTGGGTAGACTCTCTGAGATGGGTTTTGACCAGAGTCTCCCAGAT--TGCTGCAGAGGGAGCTGAGGGCGCCCTGCTTGGCAGGATGGACAGTGAGTGGTGACAGAGGATGGAAGGGAACGCTAGCATTTCCCGGTGGGCAGAGGAGGAGCC--------AACAAAGGAG

a score=5733
s chr3           145027279 169 + 160039680 GTGCTGACTCCATACCTTGTGGCCCATACTGAGTCAGCTTCTTTCCTGCTAAGAA----GTCAGGAGTCAGGTGAATCCTGATCCCCTTTTCTCCACATGCTCCTATATGTTCGGTGTAGGGCTCATCATTGCCTAG-AGGGCTGGTTGTTGATACAAGGACATCAGCCTGAAA
s HiC_scaffold_1 131166196 169 + 233722169 GTGCAAATTTCCTACCTAATGGTCCATATT----CATCTTGTTTTTTGCCCAGAACAACATCAGGAGTCAAATGAATGTATTCCGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGG-TGGTGCAACTATAACATCAGCCTGAAA

a score=5865
s chr3           145027279 169 + 160039680 GTGCTGACTCCATACCTTGTGGCCCATACTGAGTCAGCTTCTTTCCTGCTAAGAAGTCAGGAGTCAGGTGAATCCTGATCCCCTTTTCTCCACATGCTCCTATATGTTCGGTGTAGGGCTCATCATTGCCTAG-AGGGCTGGTTGTTGATACAAGGACATCAGCCTGAAA
s HiC_scaffold_1 131090958 169 + 233722169 GTGCAAATTTCCTACCTAATGGTCCATATTCAGCTTGTTTTTTTCCCAGAACAACATCAGGAGTCAAATGAATGTATTCTGCCTTTTCTCCACATTCTGAGAACTGCTTGGTGTATGGGTCATCTCTGCCTGGCACGGCTGG-TGGTGCAACTATAACATCAGCCTGAAA

a score=5323
s chr3           145027285 163 + 160039680 ACTCCATACCTTGTGGCCCATACTGAGTCAGCTTCTTTCCTGCTAAGAAGTCAGGAGTCAGGTGAATCCTGATCCCCTTTTCTCCACATGCTCCTATATGTTCGGTGTAGGGCTCATCATTGCCTAGAGGGCTGGTTGTTGATACAAGGACATCAGCCTGAAA
s HiC_scaffold_1 131040966 163 + 233722169 ATTTCCTACCTGATGGTCcgtattcattttgtttctttcccagTACAAAGCCAGGGGTGAAATGAATGTATTCTGCTTTTTCTCCACATTCTGTGAACTGCCTGGTATAAGGTTCATCTTGGCCTGGGAGGGTTGGTGGTGCAATTATAATATCAGCCTGAGA

a score=6528
s chr3           145027840 199 + 160039680 TAAAAAAAAAAAAAAACAACTT----GTTC------TCACGTTTTTGAAGGTTTCAAGTTTTGGCCTCGTATATTCAGGCTTTGCCTTCCAGCTCTCGGGAATCAAAATGGCAACATTTTTGAAGTAAAATCTTTTTCCTGTAGCTTCAAACAGGTATGGAGAGGCCTGAGTCACCATGTCCTG--AGAGGAAAGAACACGCTTAACAACA
s HiC_scaffold_1 130994762 211 + 233722169 taaaaagcataggAAACAATTTAAGAGCTCAGTAGCCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCTGACAAAAGTAAAAGCACCTATGATAACA

a score=7746
s chr3           145027865 158 + 160039680 CTCACGTTTTTGAAGGTTTCAAGTTTTGGCCTCGTATATTCAGGCTTTGCCTTCCAGCTCTCGGGAATCAAAATGGCAACATTTTTGAAGTAAAATCTTTTTCCTGTAGCTTCAAACAGGTATGGAGAGGCCTGAGTCACCATGTCCTGAGAGGAAAG
s HiC_scaffold_1 131091257 158 + 233722169 CTTACATGTTTGTAGCTCTCGTATTTTGGCCTTGTGTATGCAGGATCTTCATTCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCTATAATCAAAG

a score=7780
s chr3           145027865 148 + 160039680 CTCACGTTTTTGAAGGTTTCAAGTTTTGGCCTCGTATATTCAGGCTTTGCCTTCCAGCTCTCGGGAATCAAAATGGCAACATTTTTGAAGTAAAATCTTTTTCCTGTAGCTTCAAACAGGTATGGAGAGGCCTGAGTCACCATGTCCT
s HiC_scaffold_1 131166495 148 + 233722169 CTTACATGTTCGTAGCTCTCATATTTTGGCCTTGTGTATTCAGAATTTTTCTGCCAAGTCTCAGGAATCAGTATAGACacgtttttgaaaaaaaatcttttttctgtgGCTTCAAACAGGTAGGTTGATGCTGTGGTCACCATGTCCT

a score=9134
s chr3           145027865 240 + 160039680 CTCACGTTTTTGAAGGTTTCAAGTTTTGGCCTCGTATATTCAGGCTTTGCCTTCCAGCTCTCGGGAATCAAAATGGCAACATTTTTGAAGTAAAATCTTTTTCCTGTAGCTTCAAACAGGTATGGAGAGGCCTGAGTCACCATGTCCTG------AGAGGAAAGAACACGCTTAACAACATC--ACTGAGGACAGATTGAGTTACGA-TGAATCATTTCAAGATGCATCTGT---ATTTTCCTTTCAAAAGC
s HiC_scaffold_1 131255772 250 + 233722169 CTTACGTGTTTGTAGCTCTCATGTTTTGGCCTCTTGTATTCAGGATTTGCATCCCAAGTCTCAGGAATCAATATAGatacagttttgaaaaaaaatcttttttctgtgGCTTCAAAGAGGTAAGTAGATGCTGTGGACACCATGTCCTGTTATCAAAGGGAAAAAGTATG--TGAAAACAACCAAGTGAGAGTGGAATAAGAGAGGAGTGGTTCTTTTCGggaattttctgtttcatttttaattcaaaagc

a score=8678
s chr3           145027865 162 + 160039680 CTCACGTTTTTGAAGGTTTCAAGTTTTGGCCTCGTATATTCAGGCTTTGCCTTCCAGCTCTCGGGAATCAAAATGGCAACATTTTTGAAGTAAAATCTTTTTCCTGTAGCTTCAAACAGGTATGGAGAGGCCTGAGTCACCATGTCCTG------AGAGGAAAGAACA
s HiC_scaffold_1 131205432 168 + 233722169 CTTACGTGTTTGTAGGTCTCATGTTTTGGCCTCCTGTATTCAGAATATGCTTTCCAAGTCTCAGGAATCAATATGGacacagttttgaaaaaaaatcttttttctgtgGCATCAAAGAGGTAAGTAGATGCTGTGGTCACCATGTCCTGTTATCAAAGGGAAAAAGCA

a score=41674
s chr3           145031782 3113 + 160039680 CAGGACACTCTCTCCTTACACATTGCTGACCCTGGATG----TGCTATGGACAGACTGGGGACTCTGAGTGGTCTGTTAGAAGGTGCTTCCATCTCGTTTTTAGCTCTTGGTTTTCGTTCTGAAAGACCTCCTCTCACCCTCTACCTGATGACCTTTTGA------ATGACTCTTCCAGCTCTCCCC-------AGAAAAGGAGACAAGGTGAACCACTCCTCCACCTCTCACTCCCACCTCCCACCCTCACCTGCACTAGCCCCGAGCTGACTCTCTGCTTCCAGGTTAGAAAGATGAAGAGTCTCTGCCCACTGGACCGGTC-------TTTTTAAAGCTAGAACCTTAAGTTAGGAACCCCAGGGTCCTATTTAACATCACACGTTAG-------TTATAAGTAGAATAAAAACAGGGTCTAATGTGTGTTGGTGGTAACATCCTGCAAAG-AATTACATGCTGTGCAGTTACCCATATCTGCTGAATCCAGCTGAATTTGCTTTTCTATGGAGCAAAGTAGATTTCAGT--GACAACCTTCAGTCAGTCAGTACACCTGTCATTTGTTAAGTGCCAACAACACATCTAAGTAACTCAGAGTTACGTGCATTATACTCGCCTTTTTATTTCTCATAAAAATTCTAA-----AGAGTTCTCATGTTCTTTTTCTTGATAAGGAATCTGAGAGTCAGACATAAAAATATCTTGCCAGC--CAAGCAACTGAAGCAAGACGAATCATGTTCTCTTTATCACAATATTATGCCTATTGAGGATTGAATTAGTATTAGCAAATTAGGACTTGCCAAAGCATAGGTAATTGCCACTG-GCATGTACCTTTATGTGTTGAATGAGGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGACAGGACTCTTCAAAGATTCCAT-CCTGCAGCTTTCCCTCTGGAAAGGGCTG----GGTGTAGAAGTGTCTTTACTCCAATATATATacacatacacacacacacacacacacacacacacacacacacacacacacacaAGGTAGATGTGGTTTTCTCAACTTACTGGAGGTGATTTATTATAGGCCTTTAACCTCTTGACCCTAAATGGTTCTTTACCACATTTGCCTACAATATAAGAGGAAGTGTTGTTTAAAAACCAAACTGTAC-TTTTAAGTGTTTCTAATT-----AAAAGGAATGTTGGGTTTGCCCCTGGCTGCACCAGGTGTTTGAGCAAGGGTGGGAGATCCTAATCTGGTTCCTCAGAAACACTCATCCAGGGAAAGCAGGTTGTCCATTGGAGTATCTGTTTACTTACAAATATTTGTCTAGTCAGGGACACTGACCCACCCATCTCCACCCCTGAACCCCA-----CCTTTCCA------GCTTGACATTGATGCATTTAAGGAAGCTTTAGTTTCCTGTAAGGAATCTTGCCCA-----GTTTCTCTCTTGGTGAACTCCACATTTCTCCTCAGCATCTC-TGGGATGCTCTTTCCATTCCAT--ACACACTCAAAGCATCAGCGAGTAATTCAGATGTCACTAAGTAGTCCCCAGTGGAGAGGAGCGGTAAAACTTTCATTGTATTTTGCAAAGCAAACTTCCCCCAGTTCCCTCAAC--CCCACTTTGCTTCTCTACCCCACAGCTTCTATCAGTCAGTAAAGTTTAAACCAACAACATGAAAT--CTTTTGCTGAAATTATGCCACTCTGAAACATAAATTAAGGTGGCTCTGCTACCCCATAAATTCTTTCAAGCTTACAAAACTTTAGAAGAAAGCCCAAAGTGGTCTGCCATTGCTGCTGATTTCAAATTGCTTGGAAGTCATTTTCATCC-------TTTTGGTCTTCAGATAGACAAAGGCATTCATCTTACCTTGTCTGTCCATTCTCTTTGACATTCA---------GCTCATAACAACTGAATTAGTATTTTCCAAATGAAACAATTGCAGATGAAGTATTTAAAAAG--AGGTTTAAATCCTTATCTAGCTGATTCAAAGTACACGTTCATATAAAAAATGGATACATTTATCATACATACAAATACAAAGTTGAGATTTTgggtcggagagatgactgtgtgtataaagaaaggcattt-gatgtcaaggctacagtctgcctttgttccttggaacactcatggcgatagaacaaaaaagactcctagaagttgtcttctgaattttaaatgcatgttttggcacatgtacactcacgtatattctctctctctctctctctctctctctctctctctctctctctctctctctctctctttcacacacacacacaCAGTTGATTATATATACTACCCCACACACAGAGATTCTAAAATATGTCTCCAAACTATAGGTTTGCCTATATCACCAAGAAAACAGGCCCACAGTTAAGTTGAGGGTCTATCTGAGACTTTATCACATATAAGTAGAGGAAGGGCAAC--AGTCATGGAGGAAT-GGAAGCAATGGAAGAA---GCTACAGAATTGGCCACTGCCATCCAGT-GGGAGACCAGGCAAGCCAGGTTGCAGCAGTCCCTGC--CCCTTGGTGACATGTCCTATAAGGAGCTAGACTAAGAAGCCTTCCCTGTAATGAACCACTCATTGGAGTCAGGGTA-AGTGTTTGGTTCCTTCTCATCTCTAACATCTTGCCCCCTGGCTTGCCGGTGGTGTCCAGTGCTTCCAGCAATGCTGTGAAGAGAATGCCAAGCCTTTCAAGCCTTCCTGTGGCTTAAGAAGTCAATGATTGCAAAAGGTATCACATTGCCCTGTGGTGGTGGGAACACTTGAGTCTATAAGTAGTGGATAATGACTGAGGTAAGCATGTGACCAAGGGTCTAGCAAGGAGATGGAACCAGAAAACCTGAAGAT--CCACAAAAATGAATCTGCTGTCTTCTCTAGGTGGAACCATT-TTTAAACTGCTCAGATTCACTCTCAGTATATTCTGTTGCTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgttcatgtgtgtATAAG----------------CTGAGGACAAGGGCAAGTTCAGTAATTCATAGAATC----TCAAGTCAATGACTAATCTCAATTGCCTAAA--ACATGCCAAGTAAGAGA-ATTATAGTGAGT
s HiC_scaffold_1 131312582 2757 + 233722169 CAGATCACTCTCACTCTATGTAATTCTGCCTCTGAATGAATGTGCTACACCCACATT------CTAGGGTGATCTTTCAAAAggattttcccttttatttttagcCATTTGTGT---------AATACCTCTAGTC-CCTCCAACATGGCAAGAGCTTGGGGGCATATGATTGTCACTCCTTCTCCCGCGCAGGAGGAAATAAGATGAGGTG--CAGCTCCTCAGC---------------------------------AGCCCTGA--TGGGATTTTGCTTCTAGGTTGACAAAATGCAGTTTCCTT---CCCTGGAATGCTCAGGGCTGTTCTTATAAATCGGAGCTT-------GCATTCTGGGCTCCTATTTGGTATCACAGGGAAGGGGATTGCAATTAGGAGTATGAAAAGTGAGCCTGATAGGTGCCTGTGGTGAAAGCAGGCAAAGGAAATACCTG-TGTGCACATCACAGGACCTGCCAAACTAAACTGATTCTGCAGTAGTGCAGAATGAAGTCATTTTCAGTCAAATAACTCACAGCCAGTAAATAT-CAAATCCTTCTTTAAATTCCAGCAA----TGGAACTAACCCTGAGTTATGCATACTGTGTTCATCTC---ATCCCTTGCAAAAAGCCTGATGGTTAGAGTTAtcatttccatttcacagatgaagagacTGAGACTCAAATAAAAAACTG-ATTGCTAGTGTCATGTACCTAAAATGAGAGAATTTATTTTCT----ATCACAATATTGCAC-TGTTTAAGATC--ATTGCCATTGATCA--------CTGTCACAGTGTAAGTAAGTACCACTTTGAACTTACCTTTATTTGTTGAATAAGTGCTTCGTCTTCGGGCACACTGGGGTCAATTGCAATGACAATGTCTTCATAGCCATTGTTATTCAGCTTAATGAGGGAATCGCTCAGGGCCCCTTCTAGAAAGTGAAGGACCAAGATGAAGACGGAACTCTTCCATGATCCCATGGCTGCACATCCCACTGTGGATGTTGTTGCTTAGGTAGAGGACTTTCTTTGCCcctatatatatatgaaaacagaCACACAC-----------------------------------------------TTTCCCCAGCTTATCAAAGGTGATTTATCACAGGGCTTTAACCTCTTGA-ACTAAAGGGTTTCTTATTGCATTTGTCTTTGATGGGAAGACAGCGATCGCTTAATA--CGTTGTGTACTTTTTAAGTGTTTC--ACTGTAGAAGAAGGAGTGCTGGGTTTGCCTTCAGCTGTGCCAGATGTTTGCTGAGGGTGGGGAAGCCCACACCTGGTTCCCTGGAAATCCTCATACCGAGCA-----------CATTCAAAGATCTGCTTACTTATCAATATTTGTCCAGCCGGGGAATCTAACTCATCCCGCAATACCACCGACCCTTGCCAACCCTGTCCAACAAAGGCTTGACTTTTGCACG-----------TTCCGTATCTAGTTATAACTGTTGGTCACCTTTATTTGTATCCTCACAAGCTTGACACG--GCCTCAGCAGCTCTTGGTGTTCCCCTTAGAATACACTGTCACACCAGAAGTATTTGCAAGTAATACCGAGAGGATCTATTGCTCTAtaatcaagacaaaagataaaatttgCATCACACTTTGAAAAACTAACTCCTTCAAGTTTCCCCATCAGCCCTCTCCTCTTC-CTAGTCCACATCTCCTGACAGTC----AAgtttaaattaataatattaacttcttttttctgaaatcaaTGTCTCATAGAATATGAATTATGGATTATTAGCTACTGCATAGATTCTTTTAAGTTTGCAAAGTCTCAAATGAAAACCCACATGGTCCCACCACT-TTCCTATATTAAAACTATTTGGAAATATCCCTTATCCAAACTTAACTTTGTCTTCAGGTAGTGATAAATGTCAGTTTCATCTTGTCAGTCCCTTTTCTTTGATATTCACAAACActgtttcataa-aattaaattagtG-CTTCCTACTAACATAACC-----TTCAGTAATTAAAAAGGAAGCATTGA--CATGATGAAGTGGCCTCTCGATGCTTTTACATA-AAAAGATGAATACATTTAT-ACACACCAAATTCTAAAATTTAGATTC------------------------------AAAAGTATCTAGATGTCCAA--CACTGTGTGTCTTTG---------------------------------AGTTCCCTAGAAATCAAAGCCTGAGT----------------------------------------------------------------------------------------------------CAAGCTTACAAGCTGATGATGAT----------------------------------------------------------------TAAAGAGTTAATTCCACAGttag------------------------------aaaagaagaagaatggaAAATGAGCCAGTGAGAGCTCAGAGGCAATGAAAAGACATGCTAATAAGTTGG----TGCCACTCAGTGGGGAGACCCAGGGGGTCAGCTTTCAAGGGACCCTCCTTCCCCTCAGGGGTTGTCTCCCAAGGGT---GAAAAAGAAACATGGTCTG----GATCTGTGCACTGCAGAGAGGAAAGGGTGACGGCCTCCTCCTCATCTTGGCTAGGTG-----CTGATTTTCCTG-GACCTCCTGTCCCTCCAGCA--GGTGGGTGGGAAGTGAGAGGCCATGA-------CCTGTGATGT--GAAGTCAGTGAGTCCAAAGGATGACAGGTTGGCCTCTGGCAGTGGAACCACTGACCTTTTCAAGGAACCGATAATGACAGAGGCGG---------TGAGGTTCTCGCAGACAGAGGGATCAGCCAGACTGGAAGATGCTCCCTAAGAGGAGCCTA-TGTGTTCATTAGGATGAATCACTGTCTGGATGGCTCAGACTCACTTTTCTCATATCCAGTTCCAGGATTATACGGGacggtttgcttttgtttttg---------gtgagTACAAGGTGTCGCACTTCTTCTCTTAGAGAAGTTACAAGTCAAATCTTTGATGGAATCTGCTTCAAATTGGCGGTTAATCACAACTTCCTAAATTACATAAGACGTGAgggatattaaaataaat

a score=4695
s chr3           145032580 157 + 160039680 TACCTTTATGTGTTGAATGAGGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGA----TGAGGGACTCA-CTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGACAGGACTCTTCAAA
s HiC_scaffold_1 130996296 151 + 233722169 taccTTTATATTTTGAATGAGTTCTTCATCTTCTGGTACACTGGGGTTAACTGCAATAACAATACCTTCGTATCCATTATTATTCAACTTTACCATTGAGGTTTTCACCTCAGG--------CAAGAGATGCAAAGCTAAGAGCAGAATAA---CCTTCAAA

a score=6974
s chr3           145032580 278 + 160039680 TACCTTTATGTGTTGAATGA----GGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGAC-AGGACTCT-------TCAAAGATTCCATCCTGCAGCTTTCCCTCTGGAAAGGGCTGGGTGTAGAAGTGTCTTTACTCCAATATATATacacatacacacacacacacacacacacacacacacacacacacacacacacaA
s HiC_scaffold_1 131172028 258 + 233722169 TACCTTTATGTGTTCAATTATTTGGGG----ATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGC-CTTTGAGTCCC--CCAGCAGGTGCAGGACTAAGAGGGGAGCGAGGGCTCTGAACAACCCCATGGTTCCTCTCCAGAGCTTTCCCGACG------------------------Cttgtttccatatatatatacacac-catatatatatgtatatatatatatgtatatatatatatatataa

a score=6036
s chr3           145032580 179 + 160039680 TACCTTTATGTGTTGAATGA----GGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGAC-AGGACTCT-------TCAAAGATTCCATCCTGCAGCTTTCCC
s HiC_scaffold_1 131096382 184 + 233722169 TACCTTTATGTGTTCAATTATTTGGGG----ATCTTCTGGGACAGTGGGATCTATAGCGATGATGACGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGAAGCGTTTGAGTCCC---CCAGCAGGTGCAGGACTAAGAGGGGAGCGAGGGCTCTGAACAACCCCATGGTTCCTCTCCAGAGCTTTCCC

a score=6401
s chr3           145032580 152 + 160039680 TACCTTTATGTGTTGAATGAGGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGAC-AGGACTCT
s HiC_scaffold_1 131047273 150 + 233722169 TACCTTTATGCGTTCAATTATTTGTCTATCTTCTGGCACATCAGGATCTATTGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAG---CCCTGCAGCAGGTGCAGGACTAAGAGGGGAGCGAGGGCTCT

a score=6595
s chr3           145032580 228 + 160039680 TACCTTTATGTGTTGAATGAGGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGACAGGACTCTTCAAAGATTCCATCCTGCAGCTT--TCCCTCTGGAAAGGGCTGGGTGTAGAAGTGTCTTTACTCCAATATATATacac
s HiC_scaffold_1 131218935 226 + 233722169 TACCTTTATGCGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGCCATTCAGCTGCACTAGGGACGCGTTTGAG---CCCCACAGCAGGTGCAGGACTAAGAGGGAAGCGAAGGCTCTGAACAGCCCCATTGTTCCCCTCAAGTCGTTTGAAAAGCTTTTATTGT-GACTTGTTTTTCTCCACGTATATATATAC

a score=7143
s chr3           145032580 231 + 160039680 TACCTTTATGTGTTGAATGAGGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGACAGGACTCTTCAAAGATTCCATCCTGCAGCTTTCCCTCTGGAAAGGGCTGGGTGTAGAAGTGTCTTTACTCCA-ATATATATacacata
s HiC_scaffold_1 131125523 229 + 233722169 TACCTTTATGTGTTCAATTATTTGTCCATCTTCTGGCACATCAGGATCTATAGCAATGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAG---CCCCCCAGCAGGTGCAGGACTAAGAGGGGAACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATGTATATATACTCCTA

a score=7246
s chr3           145032580 231 + 160039680 TACCTTTATGTGTTGAATGAGGGCTTCATCTTCCGGCACGTCGTGGTCTATGGCGATGACGATGCCCTCATAGCCGTTGTTGTTCAGTTGGATGAGGGACTCACTCAGAACTCCTTCCAGAAGGTGGAGGATCAAGAGGAAGACAGGACTCTTCAAAGATTCCATCCTGCAGCTTTCCCTCTGGAAAGGGCTGGGTGTAGAAGTGTCTTTACTCCA-ATATATATacacata
s HiC_scaffold_1 131259343 229 + 233722169 TACCTTTATGTGTTCAATTATTTCTCCATCTTCTGGCACATCAGGATCTATAGCAACGATGATGTCTTCATAGCCATTGTCCTTCAGCTGCACTAGGGACGCGTTTGAG---CCCCCCAGCAGGTGCAGGACTAAGAGGGGAACGAGGGCTCTGAACAGCCCCATTGTTCGTCTCTAGATGTTCAAAAGGCTTTTCTTGTACCTTGTTTTTCTCCATGTATATATACTCCTA

a score=8556
s chr3           145054151 508 + 160039680 AATTTACACATTATTACTTTTGGAATTTTGTTTGTTCATATTCCATCTGCTTCACAAAACCAGGAAGACAAAAAGTGACTTCCTACTATACTGACTACCATGTTAGGTTCTGTGCTTGTGGGTCAATTGTTCTCCCAAAGTAGTCTT--GATAAGACACAACAGACTGTAG--CTGGAAGAGTGA----AATAAAATTAGCTACCATCTGGGTCCCTCTCCACCCAACCCAGGAAACATCTCGCTGATAAGAGCATTCCAACCTAAGATAATGAAAGATTAGTGGAGAAGGAA--TTTAATTTGGTTCCTAGGGACAAACTGGAGTCTCCTTCCTGCA-TATGTGTGTAGGTTCTGAGAGCCTCAGTGTTATTGTTTACTTTGTGACCTGTGCCCCTAACTCT--TTTATTTCTTTTCTGT--CTTCGTGTCTGATTTGTATGCTTCAGTTTCCTAAACATACACAGGAAG-----------ATTCTCTCAGCGCTTACCAGTC-TCTGATTTCACATCCACCTTCATTCCCTGT
s HiC_scaffold_1 131318162 518 + 233722169 AATTGACAAGTTGTTCCGTTTGGAGTGTTGGTCATT-ATAGTCCTACTGCTCCCCAGAGCCAGGGAAATGGAAAAC-ACTGCCCCTTGCgcgaggtcacttcctccttgcTGTGCCC-TCAGACTACCATTCTCAGATGGCAGGTTTTGGGTAAGACTCAGTGGCCAGTacacctgggaggctgacagAAATAGAACTGGTTACCATCTGGGTTCTTCGCCACCCATCCGTGGAACCATCTTTCTGATAACAGCTGCCCAATCTAGGAGCAGGAGGGAGGATTTATGGTGGGACCCTTTCTTTGGCCCCTGGGGACAG-------------CACCACATTATACGTCGAGCCTTTGGACACCTCTTTAACATC-CATATGCTGCTTTCTGTGTCTCtgactttcattttgtcactttctgtCGCTTTGTGCCCGACCCATGCTTTTTAAACTTCCTATGATACACAAGAAGTCAGCTTCTCCTTTCTTTCAGAGGCCACtactcattttactttatttttgcctCCATTCCTTGT

a score=67318
s chr3           145068563 3488 + 160039680 CTGCTTATGTTAGGGTCCTGTGTCTTTTCAAATCTTGTTTCATATTTTGTCTACAGGTTTAATCGTTACCAGCAAGAAAATTAGTTCAAAAGAAACAACTTCACTTATTAGTGCCATTGGATCTA----AATTTGGAATAAATGATATTGC--AGGTTCAGTGCTTCTTAGAATAAGTAGATTTTAACAGCCGA----CAAGCAAAAGCA-------------GATGAATCTTGGTGGAGTGGGT-----------------GGATTTTTCTGATA-----------TTAGCATGCAGGTGTGATGGT------------------GCCTGCTCA---GCACTAGCCTTCTCGGTCGCTCAGCACATGCTGTCT--GTGGTCTATAAAATGCTGTCATCTACTACTTTTGTCTGTCTTTCATTGAAATTTAATCTTCCTTTGCTAGCACTAAAA--ACTGGGCAAAACATGGGAAGGCTTTGCTC-----TCCAGATCACAGTCCCATCTACTGTATAGGCATTTCCATTCTGGTGTTTACTGCTAGGGTGTTTGCCTGTATTACTTTCATTTCCCACATCTCCCT-----------------------------------GCCCACG------------------------TCAGTTAACTGGGTGTCTAGCTCATTTTCACCCC---------------------------------TTGTCTTATAATCTCAGGTCAACTCTGTGATGATGTCATCACTCACGTGGTACC------TGACAGGCAAGTAACACTGCGTGCTTCCTTGGTCTCCCTGTCCCAATT-TTCTGTTTCTATTTTTTAAAAAATTTACTAATGATCAACAGGAACTTTAGCACAACTCTGTTCTATTGGTTGCTGGGATCTCTAATTCACTGTTTCCCTGTATTTCCTATGTCATCATTGTTTCCTCTGCTTTTAT--CCTCGCCAC-------------TTGGTGAGATCA--TTCTACCGTGT-ATGTGTGTTG-ATTTTATGTCATTGATGTCAAGGACTTAGAAGTCTGTCTTCG-------AAGTGATTTCTA-ACTGAAGTCAAAT-------CTGCTTTCACAAAATGGGAGGGAA---------------AAACAAGAAAGCAGGGGAACTTCTTTTATTCTTTCTTTGTCTTGTAttttagttttctgagacgtatcctggctatatagtccagtctggcctcaattctctatcctcctaccatagtctcctgaatgttgggattcaagcatgCAACAAACACTACAAGTGTCTCTCTCCTGCTAATGGATGGGGGAAGAGTTAAACATTCCTTGGTAGCCTCCATGCCTTCTTAAATAGCAGAGGGAATGGGTAGCTGATAACATGACTCCACATTTATACAGCTCTGTTACCCTCCAGCACAGAGCCTTGTATTCCACCCCATTCTCTGTCATTCAGTCTGTAAAATAAGAAAAGATATCAAGAACTTGAACCCTTACTTAGAGTCCCATCTCTGTATTTCACCAGCTCCAATTTAAAGCTGTGGGGAAGCGGAATCCTGGCTATCAGGTATAT-TGGCAACACAGGAAGAAGGAGTCAGCTCCATCTGGGACCTGAGCTGTAGAGGCCCCCAAGCTCCCA---GCCCTTGGAGATGTAGGCACTGGG----AAACCTGATGCCAATGGCAGACATG--------CACAGCTACAAGAATTCCAGGGAGGCAGCAGGGGCAGAGAGAATCCCTGGCTGCTTTTTCCT----ACTCTTTCAGATCTCTCACTGTGGCATCATGTCCTTTCtttttattttatttaattttttaaatGTTTTCCTTCCAGGTC-CCACATTTCCC-ATGCACCATGTCCCCCAAATGTGACAAAAT---CATTCTCAATTGATCTTGGTTATAAAACCAAGCCTTCATCTGTAACA----TAATATTTATTCAATAAACCTTTAAGTTCTTGAATTTAGAAATGACataatattattaaataacattttttaaaaGGAAG-------AAGTAGCATTAGATGATTTTTATTTCC-----ACATTTTCTCTGCTGTCTTCTCTGTGTCCTTGATGAAGAAAAGAATTGCATGTACTTATTAAACCGGGGCAGAATTTGCTAATTGTTTCCA------------------TGACTTCTTATTTGA---GATGGAATAAAACTATATGGTGTATATA----TTAAAATTATTTCAGCATAATGTCTTTTACCTGTAAAGCCTCATGGGAGCCGTAACCATTTTCATTCAATACTTCCAAGCCAATAACTTAGAAAGCTGCTTCAATGGCACTAACGTCTTACAAACAGTAAACTCCGGTGACCTCTGCTACAGATCAGTATCCAAGGGACAAGGACAACAATTGCATTCTAAGGTCTCCTCTCATGGTGAGAAAAGTCCTATCTGAACTTTAGTGGTGTCTTGTGAGCCACAGTGAATTTAACCAAAGGACAAGATATAAAGAACCCTGTAGTATGGCCTCTTCTATAAA----GCAGCTTGGTTGT-CAGTATAAACATGTGTCCTTCTCTGCACAGATAAGCAGAGATGAGAAATTCATCAAAGTAAC---ATGTTTGCATCATACAGATAGTTACACTGTCTAACTAAGA-CCCAACATTCTTTTCTGTACCCAGA---ACTTCCCCCAACCTGAACTTCAATAAAACAAGCTTTTCTTGACTC-GATTTGATTTTGTTCTT-CCTTTGCCTTTCAAGCCATTACCTTGAGCAATATATTTTATTATTTTTCCATAACTGGAACCTTACACTGTTTTCTAAC--CCTTTCCCAAAATGAGT-------TAAAAGTTGGTGGGTTTTTTTTGGGGGGGGGGGGAGGGCATTTTTGCATTATGTAAAAGTCCC---CATGTCGAGACTATTTTGATTTTGTTCACATTTTATTTTGTG---------GATGTAAAGGTCATGTCCATCCTACCTAAGAAGGAAGATACTGTGCCTGCTTGTTCATAGAAATTTTGTCTCATTCTCTTTTCTTGATGGTCTCTTTTTCCTGTTAAAAATACAGTGTGCTACAACCATAATAAGGCAAAGGATTGCTATCAAACCTACTGTTGTTAAAACTCCTTTCAGGATCAGATCATCTCTGCTCACTACAGGAGAAGAGTTTGGAGGAAGAGACATTGATACCAGGGCAATGTTTGACACAGCTGACCTGAGGGAGCTTCTATCCATGGCTCTCAGGGCCACATACACTATGTAGGGTTCTTGTGCATCTTCAGCAAGTTCATGATCAAGTTCATGGGTGACAAGCTTGGGTGAGAATGTAAATGTCTCCCTGGTGCCAGCATGCTGAGGAACTAGCTCTGACGAATTCACCAAGATGGCATTGTCAAAGTCATCCCGAATGTTCCATAGGCTTCTGCTCATTCTTATTTCATAGCTTGTAGCTGAAATTAAAAATACACACAGGAGCGTATGATCAATTTGTATAAGGTTTTTAGTTGGTGAAGATTAGTAATGAAAATA----ACCACAAAAGTCAAACTATCAAGGAATATACGT---GTGAGAAATCACTGAATA-----CCAAGTTGCAATGTAAAGACTCATGCTAAAATGTGAGCCAGGAGCACTTGATATTTTTTTGAAAGCAAGAATCAAAAAAATGATGTCATCCTCCCTATGAGTAATTGTGTAAAGTTCATGTTGTGTTATT-----GAGCTGTCTCTAGCTTTTGCTTTAACTAGTGAAGCTTTTTGTAATGTTGATATGGAAAAC-AATAAAAAA
s HiC_scaffold_1 131320869 3512 + 233722169 CTGTCTTTGTCAGAGCCCAGTGTATctaagaattttgttttctactgtgtCCAGAGTTATAATTGTTATCA---AAAGGATTAGTT--GATTGAGTGACTTCAAC-ATTAATATTACTTtatctgtcatatttttaaatgaatgatatATCTGGGGGTCACCTTTTCCAAAGatagctacattttaaaaaataaatcataagtaAAAATTTTCCTATATACTTAATGTATGTaggaaatatacattttaaatatacattataaaatttttcctataaacttaatgtattaaaatgcaaatacaaagatTTTGGATGGCAGACAACAGTGTGCACATAAACAGTAACCT-------------GTATAAGCTGTATCAATCACCCTTAAAATAA-GCTATGTACTACTTATGTCTCTTCCCCACTGGAATTCAATCTTACTTTACTGTCACTAAAAGAATGGGGCAAAACCAGAGaaatgttttcttcaattttccgAACAAATTTCTATCTATTGCAGACCAATGATTAttctgctttttaataaaataccatCGGcctatatt--tttcattcctttttcctttccttttcttattttttgatggCAGTATTacaaattgaacccaaggctctGAGAATGCTAGAAAGGTGCTCCATTAGCTACCTCCTCAGCCCACCCTCATTTCCCAGAATTGTATTCTCATACCCAGATAACTTTCTTGTCTTGCAATCC----TCATATCTTCCATGCTATTATTGTTCACGTGGTGTCCAAAattgagaagtgagaaaaa--------ttcctccttctctttggctcaattattctgtttctcttttt----------attcaggATCAGTAGGGACTTC--------------CCAGTGA------------CTAAATCTGTATTTTCTCACACGTATCACATCTTTCTTGTCTAAT--GCCTTCATTCCCTCACAACACTAAACACCACCTTCTTAATGTCACCTTCTACCTTGTTACGTTTGGTGTGCTTTATATCTTTGGCATCC----CATAGTTTTTCCTCTTCTTACACTTCACTAATTTCTAGACTTCAGTCCACTTCTGTTCCAGCATTCACCAAATGGAAAAAGAGCTAAAGagcaaaatacacacaaaaagaagCAGATTCCTTTGGAGCTA-----GATTTGTGTTTCTGCTCTCTGA------TCTTGGAA--------------GAGCTGAGTACTC------CCAAGCACAATCCCC------------------------------------Agcatctttcctcttcc-------------------------tctcaggCAG--------------------GCAGTGTAAAGGGAAGTCTGAGAACCTAGCTCTTCTTCTATGTAAATCTGCCTTTCATCAACACAAAACTTTGAGTTAC---TCACTTTTCATCTTCCTGTCTGTAAAATAGGGAAAATATTTGAGGACTTGAAAC--TGACCACAGCCTTCTCTTGGTATTTTACCAGCCACG-TTTGAAACCACAGAGAAACAAATTCCAGGCTCGCATGAGTAAACGACCACGCACAAGGGACAAACTGGC--AAGTTAGAAACTGGACTGCATGGATTTTGAAGCTCTTGTGGGCC----AAGATTTAAGCACTGAGTCTTAGATGTGGTG----GGCCAGTCATGGGCTGTAGTATAGCTGTGAAGATTCAGACTAGGTGGGA-----------AACGACTATTTGTTTTCTCCCCAGCACTGCACCAAGTCTCTACTCAGGGCTTcg-atctttttcttctctgttgttTGA----------------------GGTCACCACACTTCCTTATGTACCTT----TCAAAACATAGTCTGATTTTCATTCTTAACAGGTCCTGGTTATAAAGCTGAGATCTCTTctatattagtttttaaatttattcaataaaatttcaGGCTCTGTAATTTAAAGACCAAATTCTGTTGTTCAACTATCTTTAATAAAATGCAAGCAAGTAAATTAGAGGaagatgatttttatttccttgtggcATTTGCTTTCC---CTTTCCCTTGCTTTTGATG--GAAGAAGATTCTAGACTTTTATTTAATCAA---AGAACATGATAATCATTGCTAAAGATGAGTCTCTCCCTCTGACCTCTTCTTTCACTTAACTGAGTAAAACTGTATTGTCTACATACTTATTAAAATAAGCTCACAACTCTGTCTTTCATTCTTAAAGCCTTATGCGAAGGAAAGCCATTTTCATCCAGTAACCCCAGGGCAATAACTTTGAAAACTGCTTTGATGGAAGTAGAAATTTAcaaacaataaatttaataaatcttTGTTACAAAACTGGTATGAAGGGACAAGGATAATAACCACATTTTAAGGTTTCCTCTTACTCTTCAAAAAGATTTCTTTGAATATTAGTGGTGAGATTTGACCCATAGTACATTTAACCAAATGACAAGAGATAAAGAATTTTACAGT-TGGCGCCTCATGTAAAAAATGTAGCTTGATCATTCACCATAAACAAGCAACCTGTTCTGCACAGATAaggacaaataaaaagttaatcaAAGTAACTAAACAGTTGCATTAAATAGACAGTTATACTGCACGGTTCAGAATCTAACCCTCTTTCCTCTTCTCGGAGATACTTTTCC--------ACCTTAATAAAGTAAGTTTCTCTTGACCCTGATTCAACTTTGTCATTGCCTTTGCCTTTAAAGACATTACTTTGAAgaataatctttattattttttcataacgGT---------CTTTTTTCTAACTTCTTCTCCAAAAATAAGTATTAATATAAAAAACTATGA-----------------------------TCCATATTGTACAAAAATTCAATACACTTTAATACAACTTGACTTTCATTTCAATTTATTGTTGTGTTTTTGCAAAGTTTGATGGCTATGGGTCTTAAACCTAAGAAGGAAGGTACTCTGTACATTTGTTCATAGCAATTTTGTCCCATTGTCTCTCATGACTA--cactttttcttgtttaaaatataatgtgTTACAGTTATCACAAGGCAAATGATTCCTATCAAACTCATTGCTGTTAAAACTCCTTTCAATATGAGATGATCTCTGCCAGGTACAGAAGCAGATTTTGGAGGACTGGGCAGAGATACCTGAACTATGTTAGATACAGCAGACTTTAAAGAGTTCCTATCCATTGCTCTGATGGCCACATAAATTCTGTggttttcttgtatttctctttCAGATTGAGGTTCAAGTCCATTTGCAAAAAATCTGGGTGAGAATTTAAATATCTCTTTGGAGCCAGCCTGCTTAGGATGTAGCTTTGATGTATTCACCAAAATGGCATTGTTAAAATCATCTTGAATATTCTGTAGGCTTATACTTATCCTTATTTCATAACTTGtagctgaaattaaaaacataaatgggAAGGTTAAGTCATCTTAAGTAAGTTTTCTAGTT------TATTAGTAATGacagaacagcaacaaaaaagttaaaatatctaggaata-acataacaagaaaaataaatgagtcaaACTTTAAAACACTACATAAAAAGTCATACTAAAAGTTGAG-CAAGAGGACTTA--TTTTTTTTGAAGGCAAG-----ATATAATAATGTCTT------TATGATT-ATCATGAAAATTTTA---TgtgttatttattaaaaatgcctTCAGTTTTTACTTTGACTAGTAAAGCTTTTTGTAAAGTTtatatggaaaatgaataacaaa

a score=18966
s chr3           145072088 709 + 160039680 AGATACTGTCT-GTGGAAAGGTACTTATGAAACAAATCAGCAAGCCTACTTTGCCCCTGATCGAAGTCTTCCCCAGGTGCCGTCCAAGAGAGGACGACGTCGTCTTCCACTTTCATGGCTTCCAGGTCAGTAATTTTGCACGGTGGAAACATGTCAGGGTGGGGGCCGTCTGGGACTCCCAGCACGGAGAAGGAGCCTCCCGAGCTCACTCGACTGAAGCCCCAC-----CTCTCCTTCACAGGTCTGTGGCCCAAGTTTTTGGGAGCATTCATTTGAATATTATCTGGAGCACAAAGAGAAAGTCAAATAG-CAAATTAAAAATTTCCTGAGCAG-----TCTTGCCAGATTGTTGAGACAGCATTAGAA------CTCGGAGTTTAC-------------------TTAGTCAATAATGCGTTCATTCACCTGTTTATTCCCTCCACACATATTGGTTCATCGGGTCATATCACTGTGCTATGAATC-------AGACCAAAGTCCTCCCCCATGAGATTTTATGAGTCATGATGTAAGTGGCAGTCATATCAGTAAATAGATATTTATAAAGTGTGACTAATCCAGAATAATAAAGAGCAGGGTGCTCTTCAAGCTCCCACCATTCAGGGTGGTACTGAGGATATAACTTTCAA--GTTTCCTTTGGGCTGAGA---TGGCCAGGTAAGACATGAAGGAAGAGATGTCCTAGGAAAAGAGAGCCGCTAGCATGAAAACTTC--GGCTCAGAAAAGTT
s HiC_scaffold_1 131325153 720 + 233722169 AAATGTTGTCTTGTGGAAAATTAGATAC---AGAAGCCAGCAAACCTACCCTGACCCTGATCAAAGTCTTCTCCAGGTGCTGTCCAAGATAGAGTCACCTCCTCTTCCACTTTTACAGCTTCCAGGTCAATAATTTTGCATGGTGGGAAGATGTCAGCATGGGAGCCCTCTGGAACTCCTTGCACTGAAAAGGAGCCCCCTGAGCTTACTCTGTTAAAGCCACACTTTTGCTCTTCTTCAC--TTCTGTGTGCTGACTTCTTTGGAGCATTCATCTGAATGTTACCTTGacccaaaagacaa----aaatagacaaatgacaAATCTCCTGAATAGCTTGTTTCTGAGAAATTATCAAGAGACTCTTGAAAACCTTTTTCAAAAGTTACCTGTTTAGAGTACCTTAGTTTATTcagtaattcattcattcatccatccattcattctgTAAGTACTTATTAA---GTACATAT-GCTATGCCAGTAAttacagaagaaaacaagacaattgCTCATAGAACTT-----------ATAGTAATATCAATTGTATTAGT-AACATACATTGACAAATAGTGg------tattatgaaagaaaatag-------ctCAAA--TACATAATTTAGAGTAAAATCAAGAGAGTCACATTTAATGGTCTCCTAAAGGTTGAGAAATCAGCCAGGTAAACTGTGGAGGGAAGAATATTTCAGGCAATGGGAACAGTTGGTGTGCAAACTCTGAGGAGCAAaagagtt

a score=4337
s chr3           145072131 191 + 160039680 CCTACTTTGCCCCTGATCGAAGTCTTCCCCAGGTGCCGTCCAAGAGAGGACGACGTCGTCTTCCACTTTCATGGCTTCCAGGTCAGTAATTTTGCACGGTGGAAACATGTCAGGGTGGGGGCCGTCTGGGACTCCCAGCACGGAGAAGGAGCCTCCCGAGCTCACTCGACTGAAGCCCCACCTCTCCTTCA
s HiC_scaffold_1 131148991 191 + 233722169 CTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTCGAGGTCAGTGATTTGATTTGGTGGGAATGCTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCACAACCTTCA

a score=4337
s chr3           145072131 191 + 160039680 CCTACTTTGCCCCTGATCGAAGTCTTCCCCAGGTGCCGTCCAAGAGAGGACGACGTCGTCTTCCACTTTCATGGCTTCCAGGTCAGTAATTTTGCACGGTGGAAACATGTCAGGGTGGGGGCCGTCTGGGACTCCCAGCACGGAGAAGGAGCCTCCCGAGCTCACTCGACTGAAGCCCCACCTCTCCTTCA
s HiC_scaffold_1 131073771 191 + 233722169 CTTACCTGTTCCAGTATCAAGATTCTCTCCTGGTGCAGTCCAAGTTAGGGTGATATTACCATCTTCATATGTGGCCTTGAGGTCAGTGATTTGACTTGGTGGGAATGCTTCATTTAGGGGAACATTTCGAAATTCTGACACCACAAATGCACCTCCAGTTGCTGTTCTGCTGAAACTCTCCACAACCTTCA

a score=19356
s chr3           145075481 396 + 160039680 ctctctctctctctcctccctccct-tcctccttctccctttatcccctcccagtccatctccatctGCCTATTGCATACACACACATATCACCAAC-ACATACATGAAATAGTATTATGCACACTTGCCGTGCTAATGGTTCTTACCGTTTGTTATGTAACCTGGTACATACATAGCATGGTTTCCTGGGACAGGGAGGGCTAGTGTGCTTGTGCTGGGAGAGTGACGGACATGCACTGTCAGGCTATAGCTACCACTTACAGCAAAGGAGGAAAAATACCTGGAGTAAATCCCATCATTTCTTATAACATCTGCACCTGTGTGTATAGAGTCAGAAATTCAGCGTTAA--TATGTTGTTACAGTTGACCGCTACTATTTAATGAGTTATTGAAACATT
s HiC_scaffold_1 131329333 381 + 233722169 ctctctctctttctcctccctctttctctttctcctccctctctctctt----gtacacacaca-----------cacacacatacacatcagagattatatatatgaaataacatC--GCAAGTTAACAGTGCTGATGATTCTTACCATTTGTTATATAACCTGGTACATACATAGCATGACTTCCTGCGATAGAGTGGACTAGGGTGCTTATGCTGGCAGAGCGACTGACATACACTTTCAAGCTATATCTACCATTtacagcaaaggagaaaaaataccTCGAGTAAATTCCATCATTTTTAATAACATCGGCACC--TGCGTATGAAGACAAAAACTCAGTGTCAAAGCTTGCTATCATAGTTGATTGCTAATGTCTTAAAAGCTATTAAAATATT

a score=3987
s chr3           145075609 190 + 160039680 GTGCTAATGGTTCTTACCGTTTGTTATGTAACCTGGTACATACATAGCATG-----GTTTCCTGGGACAGGGAGGGCTAG-TGTGCTTGTGCTGGGAGAGTGAC-GGACATGCACTGTCAGGCTATAGCTACCACTTACAGCAAAGGAGGAAAAATACCTGGAGTAAATCCCATCATTTCTTATAACATCTGCACCT
s HiC_scaffold_1 130982013 187 + 233722169 GTTTCAGTGCTACTTACCGTTTTCAACATAGCCAGGTATATACAGAGCCTTATTCTGTTGTCTTAAACTTAC---TCTAGCTGTGTTTTTTCT-------TGCCTGGGCATGAATTTTTAAGCTGTATCTACCATTTCCATGGTAATCTGTGAAATATCTTGAGTAAATGCCATCGTTTTTGACAGTATCAGCACCT

a score=4909
s chr3           145075611 199 + 160039680 GCTAATGGTTCTTACCGTTTGTTATGTAACCTGGTACATACATAGCATGGTTTCCTGGGACAGGGAGGGCTAGTGTGCTTGTGCTGGGAGAGTG---------ACGGACATGCACTGTCAGGCTATAGCTACCACTTACAGCAAAGGAGGAAAAATACCTGGAGTAAATCCCATCATTTCTTATAACATCTGCACCTGTGTGTATAGA
s HiC_scaffold_1 131185990 199 + 233722169 GCAAGCGGCACTCACCATTCACTACCCAGCCTGGTATATATGCAGCTCTGCT--------CAGCGCATGCT-TTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCTGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaa

a score=4176
s chr3           145075617 197 + 160039680 GGTTCTTACCGTTTGTTATGTAACCTGGTACATACATAGCATGGTTTCCTGGGACAGGGAGGGCTAGTGTGCTTGTGCTGGGAGAGTG---------ACGGACATGCACTGTCAGGCTATAGCTACCACTTACAGCAAAGGAGGAAAAATACCTGGAGTAAATCCCATCATTTCTTATAACATCTGCACCTGTGTGTATAGAGTCA
s HiC_scaffold_1 131150085 189 + 233722169 GGTACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCCGTGG---------------TAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCT-TGT-TATAGAAACA

a score=4176
s chr3           145075617 197 + 160039680 GGTTCTTACCGTTTGTTATGTAACCTGGTACATACATAGCATGGTTTCCTGGGACAGGGAGGGCTAGTGTGCTTGTGCTGGGAGAGTG---------ACGGACATGCACTGTCAGGCTATAGCTACCACTTACAGCAAAGGAGGAAAAATACCTGGAGTAAATCCCATCATTTCTTATAACATCTGCACCTGTGTGTATAGAGTCA
s HiC_scaffold_1 131074866 189 + 233722169 GGTACTCACCATTCTCAACCAAACCTGGTACAAAGGCACCTCTATTCCGTGG---------------TAAGCTTAGTCTGGCAGAGTTTGTTCCTGCGTAAGCTCGCACTTTTAAGCTGTATCTGCCATCTTCTGAAAAAGCTATAAAATATCTGGAGTAGACTCCATCATCTTTGAAAGCATCAGCACCT-TGT-TATAGAAACA

a score=4699
s chr3           145075617 193 + 160039680 GGTTCTTACCGTTTGTTATGTAACCTGGTACATACATAGCATGGTTTCCTGGGACAGGGAGGGCTAGTGTGCTTGTGCTGGGAGAGTG---------ACGGACATGCACTGTCAGGCTATAGCTACCACTTACAGCAAAGGAGGAAAAATACCTGGAGTAAATCCCATCATTTCTTATAACATCTGCACCTGTGTGTATAGA
s HiC_scaffold_1 131236335 193 + 233722169 GGCACTCACCGTCCACTACCCAGCCTGGTATATATGCGGCTCTGCT--------CAGCGCATGCT-TTAAGCTTCTCCTGGTAGAGCTTGTTGCCGCGTGAGCTCGCACTTTCAAGCTGTATCTGCCATTTTCCGAATAACCTGTAAAGTACCTGGAGTAGACCCCATCATCTTTGAAAGCATCAGCACCTAGttgtagaaa

a score=3715
s chr3           145077589 70 + 160039680 TGGGTAGATGTCCCTTTCCTCCCTTATCACTTTATGTACATCCCTCCCAAAG--ATGCACT--GTCCAGGGGAA
s HiC_scaffold_1  92252832 74 + 233722169 TAGGCAGCTGTCCCTTTCCTCCCTCAATGCTCCATGTGCGTCCCTCCCAAAGCTGTGCACTCAGTCCAAGAGGA

a score=30265
s chr3           145077818 1248 + 160039680 GACACCTCTGCAGCCCCAATGTAATGCAGCACCACGCTACTCCTCCTTACCTGCTCCGCCATCCAAAAGTTGCAGTACAACGGGATCTCCAGCCTCTGGTTCCACTGTCGCCACCACGGTGGCATTGAGAATGGGATGCAGACCTTTCCTCACATTCGCATAAATGATCACTGGCTGAGGAAAATAGGTGCTGTCTCTTTCCACAAAGGCTTCCAGAGTGGCTGGGGACATGGCCAGGCTGGAGGCACGAGAGGCCACTGTCACTTTCAGAGCTTGGGGAGAATGGTGGGTGTTGTTCAGCGTGTAAGTCCAGTGCCCATGCTGCAAAATAAG---GCATTGTTTTGTCAAGCGTGAAGAAGAGAAAAGAA-----------AAAGCAACAGTTCA------------------TTGATGCTGCA-TTTAAAAAAAAATACAAGAAAAGATGTTAGGAAAAGTACTCTTAGATAAATGACCTCTAGCCAGCCACTTTTACGGTTAGGCAGATATAGGGGGTAGATACATCTGGGCTTATTTGGAGCAGCGAGGATACGTTTTGAATCCCAGACTTAGAACATCATGGCAAATTTGCACAGGGTCAAAGGACTTTGCCATGATTAATACGGACTCCTCTTCCCAAAAGACAATTAAATCTTTTAATTCATTTTTAGAACTGACAAAATTATA-TAAACTAAGGAAGCCATTGTGGTATCCATAGATACCCTGGGTTA-ATATAACAACATTCTTCCTTTGTTCCCTGCC------CCTCAGGCCCGCAAAATGTCAAACAAACCAAAAAA--AAGTACGCACAGTGCTAGAGTATGTAACCTACTATTATAAACAGGTCGGAACTGAACAGTGTGTATGCTGAGTAATTTTTATAAAT-----TCG-------------------------------------------------------------------------------------------------------------------------------------------GCTATATGTCATCCTCTTGTTTACACAAGCTACCCAGAAGAAACAATACCAGTAAAAAAATTGAGACAGAAA-----GACTAAGACTTT-GTGTAATGGAGTGTTCCTTTTTGACTGAGCTATACACGTCTCC--TCTTAAGGACTCAT-CTGCTGTCCCTGTTTAGTTCCTGTAAATGACAGAAAAGAATCAAAGAATCGGAGGAAATGCAGCGGGCCAAGGTGGGACTCGGTGAGGGAAGTGTGGCTGCCACCACACTCTTGCCAGCCTTCCTCCGTGGAACTGGTGTGCTTTGCCGTCTCCTAGGGAGGTCTGCGTCAAGCACCAAG-TCACCTCT---CACTGTCTTGCTTTGAACTCATGGCATCACCAGCCACGG-----CAGGAACTTCCAGATCAAAAACG
s HiC_scaffold_1 131332493 1403 + 233722169 GACAGCTCTTAAG----AACATACAAAAACACCATTCT--TTCTTGTTACCTGCTCCGTCATCAAAGAGTTTCAGCATAACAGGATCTCCAGACCCTGGCTCAATTATAGCAGTGACAGTGGCATTAAGAATGGGATAAAACCCTCTTCTCACATTTGCATAAATTGTCACAGGATCAGGAAAATGGACGCTGTCTTTTTCCACAAagacttccacagtggctgggggCACAGCAGAGCTAGAGGCGCGGGAGGCTACTGTCACCGTCAGGGCTCGAGGAGAATGGTGGGTATTGTTCAGGGAGTAGGCCCAGTGCCCAGGCTGAAAGATAAACACTTTTTGCTTtgtaaaaaatgaagacaaaaaatgAGCTCTTAATTTTAAAGCACTTATCTAAGGccttatggttttgttttgttgatgtaCTTTTCAAGGTACTGTA--AAAGGATGTTGTGAAAAGTAACATTGGTTAAAGGATGGCTAACAAACCACTGTTACTGTTA-----ACTTCAGGGAATTATA-ATGTGGGTTTATTTTGAGCTGGGAGGATACATCTTGATTCACACTTTTAGCACATAACAGCA-------TCCGGACCAAAGTTCTTTGCAAATATTAATCTGGGGCCCTTTACTCGAAAAGATGataaatgctttcatttctttccaaaaCTGAGAAAATCATAGCAAATTAAGTGAACTGTTACAATTTGTGCAGGTATACCAAACTAGGGACAATAACAGTCTTCTTTCCCTCCATTCCCCCAAACCCCTAGTCCAGGAAAtctcaaac-aaccaaaaaaccaaacTCGTAAGGATCAAGAAAAGATG---TACTATTTTCAATAGGTCAGGATTGAACAATGTCTGTGTGGTGTAATTTATAGAAATACTGATCGCAATAAAAGGAGCTACAGACAAGAAATCCATGAGTATTTAACTTTTGATTATTCCTAGAGTAGCTgctgtcctctctctctttttccctttccctcatcttcaaataaaccttttctttttattaaaaaaagaaatactgctaCATACCACTCTCTCGCCTTCCTAGAATACCTAGAAGAAAT----CTACAAAACAtagtgtgaaaaaaaaataggactaaGGTTTCAGTGCATCAAAGCATCTCCTTGTAATTAAGttatatagattttcttttttcctgattcctGCTGCTGCTCCTTATTAAATCCCAGCAGTAACAG--CGGAACCAAG-----AGAGGAAA-GCGAGGTGTCCAGGTGAGACTCAGGG-------------TGCTATTACACCCAGCCAAGACTTTTTTGGTAGGATTCATGTGAGTCCTCATTTTCCAGTGACATCTGATACAAGCATTTAGATCTTCTCTCTACCCAATCTTGTTTTGGAATTTTAACATTAGTAACAGCTGTGTAACAGGAACCTCCACATTAAAAATG

a score=4985
s chr3           145077858 292 + 160039680 TCCTCCTTACCTGCTCCGCCATCCAAAAGTTGCAGTACAACGGGATCTCCAGCCTCTGGTTCCACTGTCGCCACCACGGTGGCATTGAGAATGGGATGCAGACCTTTCCTCACATTCGCATAAATGATCACTGGCTGAGGAAAATAGGTGCTGTCTCTT--TCCACAAAGGCTTCCAGAGTGGCTGGGGACATGGCCAGGCTGGAGGCACGAGAGGCCACTGTCACTTTCAGAGCTTGGGGAGAATGGTGGGTGTTGTTCAGCGTGTAAGTCCAGTGCCCATGCTGCAAAATAA
s HiC_scaffold_1 130982920 292 + 233722169 TTCTCATTACCTACTCCATTGTCCCAGAGCTCCAGTGTTACTTGATTTCCATCTTCAGCTTCTATAATAGCTGTAACGCTGATTCCCAGAACAGGCAAAAAGCCTTGACTGACTCGTGCATAGACAATCATTGGACTAGGGTAAT--GTGCCGTATTTTGACTCATATGAGCAGTTGCAATTATTGGGAGTGTTGTGGGACTTTTTGCTCGAGTGGTCACTGTCAGTGTTAGCAATTGAGAGTTGATATGCTTATTATGAAGGCTATAAGTCCATCTgcctgtctgaaaattaa

a score=18602
s chr3           145080812 1221 + 160039680 GGTACT-AAAAACTTACATACTTTATTAGTCATATTATAAATCCTA--TATAGAGCTGCTCCCAAATATATAGGAAACTACCTACATGGATATTTCCTGTAAAGAAAGATAGACTCAGGTTTCAAAAAACA-------AACAAACAAAAAAAAAA----CTACTAATGCTATAGAGAAACACCGTGAGTGTGACAAGGTTTTAATCCAGGACTTAATGCTGCACACACAGACATATTTCAGTTGCTCTTCTTAACGTTTTTAAAATCTACAAGA-------ATGGTTTTATGACGTTTTGATGAGTCAGCACATTTCCTTTACGCACGACATTTAAGCATGGGATTCACTTGCAAGTTCTGCACTTGGCCGAGCAGT----TAATTACAAATAGGTTGTCACACTGACCTTAGCTGTCCCTGGAATCTTAAGGCTGGCTGTCCGAAAGGCCAGGTTGATGATAAAGTCACCAGTGTTGTATTTTCTTCCGCTAGGATCCAATAATGCAATCTCAGGGGGGCCACCAGTCTGCCACGTGACTAGAAAAAGTGTGTCATTGCCCACGGCGCTATCCACAGTCATAGTATCCGCCAGCTGGTGCTGGGGTTGCACAGTTTCGCACACGCTCTCAACCTGTTAAAGAGATGT--ATGTGGAAGTTTCAAGCAAATATATAACATTTCCTCCT----TTTATAACAAAAAAAAGGGCAAAGGTGCTTAATTCAGATCTGCATTGTATT-TAAATCAAAGCAAAACAGTGCATGATGTAACTAGT--TAAAACTATCTTCTTACAGCTAATGTAAGTATAGCGCATTATTGTC-tttgttcgtttgtgataaggtctcaggtagatcaggctagctttcaattctttatcatcctgtctccaaatacaaggattatatatagttgtgtgccaccattgcgtggctTCACTATTGATCTGTTTGATTGtttcctgt-----gatgctggggattaagc-caggagcttgtgcacactaggccttgtgcacactaggcaaatattctaccattgtgctaacaccctagtcccCTCCATTGCACCTCAACATTCATTTAGATGCTCTCATATTATCCATTATGAAAATGAGCATTGGCTTCATGTGGCCAATTACGACGAGAATGAGCTCTTAGAAGATTCTGCTTGTTAATATGTTTAAATGGTTTTCATTTGTATA-ACTATATCCAGAGGCTTTTACAAGTTTTAGTAAGAAATCTACAAAGGAAGTTT
s HiC_scaffold_1 131333895 1017 + 233722169 GGTACTCAAAAACCTATATATTATATTGCTTGTCTTATAAATTctagatacagatttttttctaagcatata----------catatgtatggattatataaagaaaaat----ctaacCTGCAGAAATTATTTGTGGAACTACTGAAAACATTAATTTCTGTTGTTGACAT-GAGAAGCCCAGT---------AAGGTTTTA--------------------------TACATAGTCTATTTGCTCCCCTTAG-ATTTTTAGCACGCACAAGGTGTTTTCATAAATTCAAAACCTTCATATGTAGAACGAAATTTTCTTTCCATAATGCATTTAA---TTGTATTCAACCGAAAGTTATATACTTAGTCAAATGTTGTCATAATAAACAACAA------ACACCTACCTTGGCAGTTCCTGGAATGCAAAGGCTAGCTGTGCGAGAAGCTAGACTAGTGGTAAAATTATTTGTGTAGTATTTTTTTCCAGTAGGATCCACTAACACAAtctcaggaggatcactgatcTGCCACGTGACTAGGAAAATAGTATCATTTCCCACACTGTTATCCACAGTTACAGTGTTTTTCAGTTGATGGTGAGGTTTGACATTTTCACTCATACTTTCAAGctgttaaagaaatataaacGTGAAATGTTCTAGT----------CATTCCCTGTTTTTGTTTatcacaaacaaaaatagaaa------ccatTTAAGTCTGACATGTATCATAAATT--------ATTATATGTTATGCAAGTAGTTAtaaagatattttgttatagttaaTGCA-------------GTTGTCATTTATTC--------------TTCATGAAGAATAATTTAGCT----GTTATCTATCA------AATCAAAGGCAATTAtaatatgttataaaata-----------------------taatttttttgtctttttcctttttatcggtaccggggaccgaactcaggactgcctgcttgcaaggc------------aggcgcttatgctgc---tgagctaaatccccagccccat------------------------------------------------------------------------------------aaaatataattttaaaagcttc-atTTGTGAAtgtgtttaaattgttttaacttgcacATAATATATCCAGATAC-TTTACAgattttaataagaaatata-aaagtaagttt

a score=38414
s chr3           145083255 3030 + 160039680 TTTGACTTCT--TGCCAGGGGACTA-TTAACATCTTTACTGTGGTTGTATA-TCTGCACGTTAAATATTTCCTGATAATAATTCACTGGGTTCATTGTTGACACCAAGCA--TAACTTGGCTGGTTTACTTGCCATCTGTGAGGAAGCTGCAGGTGAAATTCTGTTAGAAACATTATCCAATTGTGTCCAAA-------TGGAGTG--------GAAAATGGCCCCTTTAAAGGTAGCTTGATAAGAGGAAGCTTTTGTGCCCCAAATCGAATAAGTCATACTAATTAAAGAGGTAGTCTAAaactgaggttagtgacttatgcctgtgattccattagttaggaggaacctagaaggactaggaggacctcaaggctagcctggcccatgtaCTCACCCACAAACAATAAGAGGGAGGGTAAAGA----CTTAGAAATTTCTAGAAATTCATGAAATAATTAATATTCCTTATCAAGATGG-------------AGGCACAGCCCGAGTGAGATA--GTGCGGTTGGGGAAAAGTAA---AAATGAAAACACAACCTCTTACTTTTGATTTGGACCTTTTCCCCAcctcccccatcctaccctaccctacctgatcctactctaccctatccaacccCTAGCTCCATTTTCCGTCACAAAGAA---GTCTTCTCATGGACCTTGAAA---------GCTAAAGTCATTACAGAAAACAACTCCTGGAACTGAGCCGTACAGACGTGAGGTAAAATGGGGATACCCAGAAGCTCCTTAGAGCTATCCACACACAGAGAGTTCGATATCCAAAGAATAATAATAATGCAG----ATAGTGCAGCCAATCTGGTCCACTCTCCATCT----------ATATAGA---AACACTGA---CATTCTGACCTGTAAGCTTTGCTGGAAAATGTCTCCTGTTCCAGAAGAGATTCGAACGAAAGCTTCAGTCATTCCATTAGAAGTAAATTTATCTGGAATGAAGAACTTTAGACCTCCTGAAATACATAATTTGAATGTCAACTATTAA-----GACAGATACATAAAAAGAACAGAGT---AAATCTTCTCTGACAAACTGTGTCTACAAGAAAGTGCTGGT----GGGAGGTAGTGGGAGATGTGCTTTGCTCACTTTGAATGACAGCTGATGTAACTATGAGGCATTCGGCCATAAGGAGTTTGGCTGTCAGTTCATGGGTGTTTTCTCAGGCTCACTGCAGAGTACTAGACCTCAGTAAACCTTTACTGGATAGTCTGAGATCCAAAAGAATTCCTAAATAATTTAGATTAATTGCTAG-TAGTTGCATGGCTATATATTTGCATATATAATCGGAGAGCACTATTTTTAAAAAATAACCCAATAAATCTTAACTCTCAATGGTCAACCTGCTGCATTAGTTTTTATAGAGTGGAAGATGAAATTATTCTTTGCCTCATCTAGAAAAAAGTCAGCCATGTATCTTCCAATGCTGCTTGTGCGTCTACTCCAGAATGTGTCACAGCTTCCAAACTATGCATTCTTTGGCTAGTTTAGCAAATCATAAAAGTAAAGATTTCCATTGGATGTACAAAATTTTCA-GCTCTAGAGAAAACATTCAAAATTTGGGGAAAAGCTTAGCCGCATTTAATAATGATTTATGTTTTGTTTTTTTTTTTTAAGAAGTCTTTCCTACTTTCTCCCCCAATTAAGACCTATGCCTTAGGTTTCATAGCTTAAGGGTATGCTTA-GGAGGTTTTTACCTGTAAGACGTGATAATTCCCCCACTTTTCTGGCTGCAGAGGAACCCAGGGCCATGGAGTGAATGGTGGATCCACTGTTCATCGAGGTGAGCAGGCAGTTGGCAATGTGTTCATCTGCTCCACTGGTCACTAATATCAGGACAGAGCCGTCAGCTCTTCCATTCCGCTCCTCAACCACCTGAACACAGAGAGCCATCAGTTG--AGGAAATGTAACTCAAACTGTGTGACTAAACAGAGGAGTTAATTTCCATGCACAGT-------------------TGGTCCCCAGTGTCACCT---------ATATCTCTCCAAGGTC---CCCTGT-------------------------GCTCTATGACCACCTCCACGTTGCCC-------CGTACCTCCCCTCCC-----------------CTCGTAG------AAGATAGTGC-------GTTCATTATTACATAAGAGCCATACCTCTAAGCTCTAGCCAGTGGCTGGTAAGAAGGCTTAGGGcaatggttctcaaccttagtgacacctcagaattagatggccacgtttacaaatctcattgccaggtctcgacacaccaggtcaacaacctcagaatcacaagacttgaaacccaggcttcaagaatttGGTTTTAGTCTCttgtatgtttgtttgtttgtttgtttattGTCGGTAGTTTTCgtgcttgagattgaacttaaagtctcaagccc-actaagcatgctctctaaccaccgagctacatcaccaCATCCTA-----TCTTTCAATCAGTTGATATCAGCGGGCACCCTTTGT-----GCCCCCACCCCATCAACTGTTGTCTGTGGGTAGCAACAGTCATAGCTGATATCTTGCTGTCTATCAGAGGGT----------GGACATGTGC--ACCTCACACGCTGGCTTAGATCAGCTTAGCCATTCCTAAGGCACACATCTGGTCTTAATTGTGTGTTTACACCCATGTGTGTGGGTCCACAAATACGTGTGTTTGACTTATTTATCTTCTCAGACTCTCTTGATGCTTATCGTTGAAATCTGTTTCGTCTGTAGGCAGAAACCAAAAAATGATGATTTTGCCTAGAAA---------CAACTGT---CACAGCTGGGGCCACTTCAAAATAAGTAGGGACCATTTGGAAGGACTCTCGAAGATACTTAAGTCCCTTAGGCACTGACATTATCTTTTTTTGTTTACACATTCTGCCAACCAGCAGTTACTAAGTAATTATGGCA--CAGGTTACTTTGTCAGGCCAAGGGAGTGCAATGG-GAGGAAGAAATGGACCCTGACTTTAGGAATCACCCATCACAGCTCTACCACAGCTGAGGCCACTATGGCAGCACTATAAGGGCATACTCCTTCTCTTTAACAAAACCAAGAAACCCACCCCTTCAGTTCCCCCAAACCTTATATTCAAAGTGAAAGAGATGATAGTAAAGGCAATCAGAACTCAG
s HiC_scaffold_1 131336738 2659 + 233722169 ttttacttctaaCGACAGAACACTGGTTATTGCCTTTGCTGTGTATATATAACCttcattgtaaatattttctaacaATA-------GGG--AGTTGTTTACATTAAGTTATTAACTTGGCAAGTTCACTCACCATCTGTGAGGAAACTACAGGTGAAAAATTCTT-GAAACACTAttcaaatttgtttaaaatatctttaaagtaCTTAGAAAAAAATTGGCCCTTGTAAGAATGGCTTGATTAGAGcaagttttt-------------------------------------------------------------ttgtgtgtgtga--------------------------------------------------------------------ccaaaatcaataaaattgcCGGTAAAGAGATACTtagaaatttttagaatttaatgAACTAGTTAATACCCCTTATTAAAGTGAGTAGCTTCACTTTAGATGCAG---AAGTAAAATATAGTCTGATTGATGGAAAGTTATGGAATCAAATAcatagtttcttatttttcttctggacCTGTTTCC---------------ACCCTACTC--cctcatt----------------------tatctgcatttaGAGCCACAAAGAAAAAGTGCTCTCACATACCTTGAAAAACTGAACTGGTATGCTAATTACAGAAAATACCTCCTAGAACTCAAAAATAAAGGCGTCAGGTAGAA---------ACAAAGCCT------AGCATTCAGGACACCAAGAACTC-AGATTcaaataaagtgaataaaacagCGCAATTCCTTAGTTTCCCTTGCTTCCTCCCCCTTTTCCTGCCAAACTGTAGATGTAACGCTGAGGAAATACTGACCTGAATTGTTTGCTGAAAGATGTCTCCGGTACCCGaagaaattctactgaaagcATCAATCAT---GTTAGCATTTGATTTATCTGGTACATAGAACTTTAAGCCACCTGAAATACATGAGTGGATCACTAGCTATTAACAATgggtaaagcaaaacaaaaaataaagtgttaCACCTTTTCAGATAAAC-ATTTTTGCATCAGGGTGTTAATTTTAGGGAAGCA-CGAGCGATGCCCC---------------GACATCCTATATAGCCACGTGGTAAGCAGCC----------------------------TGTTCTCT---GCCCACTACATA-----AGAACTCAGTGAATGTTTATTAAATAACTTTGGGAGCAAGGTAGTTCCCACATGATTTAAGCTGATTTCTATCTACTTATATTGctctatatttacatttatattctgaaatcactgtttt-aaaatataatttaacacATCCTAATT-TCAATGGTAAA------ATACCCATTTTAATTGA-----------------------------CTATAACAAAATTAGCAAAAT---TTTGAATG----------GCTGATTTTAGta------------------------atgattttaataatttagtAA-TTGTAA---TCATGATTTTTAGT-------CACgatttttatgcttttaagaAAACCTTTCCAATTTGTTAAA---TTAAGCCATATACTCTGAGTTTCCAAGTTGTGCTTTTAAATATGCAG-------------------CTCTAAAGAA-----ATGCT-------------CTCAAAGGTAAGTTTTTAGAAACTGTTACCTGTACGATGTGCTAATTCCTCCACTTTTTCGGCCTCAGAGGACCCCATGGCAATGGAATGAATGGTTGCACCACTGCTGAGCACGGTGGGCAAGCAGTTGCTGATGTGTTGGTCAGCGCCGCTGGTCACTAATATCATCACAGAGCCAGAAGCTTTTCCATTCAGCTTTTCAACCACCTGAACACAAGTACCAGTCATTGGAAAGCAAATGTAGTTCAGATTTTCTTACTGAATGCAAGAATTCACTTTCATTCTAAATGCCCTGGGATGCCTCTTTGCGGTCCTCTGTAGCTCCTTACACTCCAAGCCCTCTCCCAATTCAGTCCTCGTCTCTCCCCATCACAGCGCTTGTCACCCTCCATG-CCACTGCCAGTTTGCTTGTGCTTGGGGACCTTTCCTGTTTGAATTGCCTTGATGTGCTCGTAGGTATCCATCACAGTGACAATGGGGTACGTTATCATAAGGCAGCCTTGCCTCAAAG-TCTAGTGAGTGACTAATGAGAGGGCTTAGAGCAGTTGTTCTTGACCTTGGATACACGACAGAG-TAGATGA--------GGAAATC---------------------CTAGGTCAGTGAAATCAGAATACTTGAACATGAGACCCAGGCatca-------------------------gttttgttgtt-------------------gttttagtgctggagattgaacccagagccttaagCATGGCCAAGTGTGTGCTCT-ACCACTGCTAAACACCCCCAACCTCTAAGTATTTTCTTATTCAGAGGGTTCCAG-GGACAGCCTAGGTTGAGAGCCACTTGCTCATACAC--------------AGTGACAGCCACAATTTATG-CTTGCTTGCTATCAGATGCTATCAACACAGGGATATAAGCTTATCTCAGATGCTTATTTAGACAAACT--GTCATTCCTAAAATATACCTCTGACCTTAATTG------------------------------------------------------ATTCTCATACAC---------------TTGAGGTGTAGTATGACTATAGAGAGGAACC-AGACACATTGATTTTGACTAGAAAATCCCAGGTTAACTGTGACCAAAACTGAGA-TGTCCCAGAATAAACACGGATAGTTAAGACATTGTTCAGGTGGCATTTAAGTCCCTTGGTGTTGGCCATTGTGTTCATTTATATACTAATTTCTTTGATAAGCATTTATTAAGCAACTACTACATGCCAAGTATTTTGCTAAGT----AGAGTACAACAGTGACTGTTGTATGGTTCCTGACTTGAACGATGATCCA-CACTGCTCT-------------CCGCTGTGATCACACTGCA---GCAGATTTTCCCTCGTT---------AGGAATCTCAGC--------------------TATAAGGAAAGTGAAGGAAAGGATATTGATGGTGATCAAGTTTTAG

a score=39264
s chr3           145087719 2210 + 160039680 TGGATTTCATTTATCTCACCATCTCAATCTCTAGGTC---TCCTGAG---GTTTGTCCTACCTCTTTCTCAAGAAAATAAGATATCTTGGACTCTTTAAAACCCTTTGTACCCCCACCCCATGATAC--ATTGAAGAAAAAAAAAAGAGTTAAAACCTGATGAGGGAGTAGGGAAGAATGGTTTTCAATCATTTGGAGTC-AGTGTTTACCTCTGCCATCTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGTTCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAAAGGGACAAG-------------------GCAGCCCTATCAGACCAAACATACTTTTCATTTAAGTCAGGCAGCAGGTAAAAGAAGGCCCAAGTTGAAAGA------------------AAAGTCACATGCTTCCTTTTCTCAAAAGTGACAGCAAGCTTGCAAACAACCCTGGATACCTTTTGCTTGAAATAGTAGCGCCCTGTGATCATGAAAGCCATCTCTCATAAAAATGTGTTTGCACTAAGA-AAACAGAATAGGCTGTGTACATAACCTTAGCCTTAAAGAGAACAACTCCCCTGTCCCTTCCATGAACTCATGTTTAAGAAACACCCTAAAAGAT-TTATTCTGGACAGCCCATTCTTTGGAATCCCATTAAGTTAACACTGTATCTTGTTTTATGAATTAGTCAACATATATTGATGTAGTTCAAATATTGATCCTTGTGAGGGTAGAATGAGGACAAAACT-ACGTTAATCTACTTCCTGAACCAATTTTCCCATTAGGAAATCTAGC-CATAATTCATTTAATAATAATCAACCTGTGCCAACAGTACCCCCTTAAAGGTACAGCTAGCA-ATAAAGGTAGTG-GTCGTCTACA---CCCAGTGGCTCTGGCCCTATGAAGAAGAGAGAGTTCTACGAAGAGAGCCACAGGAGCTTCGGCTTTGAGAGAAGTGTACAGCTT-----CTCCAGTCCCATCCCTGCTCCACAGAGGATGAAGCT---GAGGCTGGGTACCACTT----GCTTAGCTTCTCAGTGAGGCGT-GGTCAGGAGCAAACCTGTGCTGCTTTGTTCAGT---GATTTTCTTTTCTACATTTCATGAGTTCAGCAAGGTGGCTTTGAAATTTGTTGTGACTGTATG-TGCTTGAGTATGTTTTTTCAAAGGACTGAAAAAAAATTGTATTTGATCAT-AAGCAACATGGGTT-AAATGCCTACAACTGGATGAGAATCAGACATCAAAGTTATAAATTAAAAAC--AATGGAT--------AAAGGCAAGACAGTCCTCTTTACCTCGCAAATGATGACTAC----TATTGACTAAAACCAGACTGAAGAAACAAGTTAGCAGAATGAAGGAAGGGAGAAAGGGAGGAAAGGAGAACGGTCCGAAGCAAGCAGCAAAGATTAGC--CAGGGACGAGGAGAATATTCCATAAAGAAATGTGCCCACCACACTCCCGGCACAGCAGGGAGAAGATCCACAGATAATGACTTTCAGGTCTTTGTGAAGCTCAGTAGATAAATGAAGCCATGCAGGCAGGCCGGATCCATTATATTTGTGACT--ATCAACTCTCTCCTTTCTGATTGCATGTTCTCTTTTAGGTCAAGGTTCTGCTGACAGCTTGGCTAGAAGTGTGACATCTTTCTT---AGAGAAAATAGACTGTCCAGGGAGAAATCCTCTAACTGAATACTCTTTTAAGTATCAGCTTTTAAGTGGATGTCCAGACTCATCTTTTGTGAGTTAACATGAAATATTAGTTGACAAGATTTAGGTGCAGAGCTGAGGATCAGTTCCCTCCCTGGGCGAGTTGTCTCTTTTGAAGGTCAACATTTTTCAAAACAAAGGAAGGA----GAACCGCAGGTGAGAGGAGTGCAATCATTGGCTCCTTCATTCTCGAAAACCACATATCTCATCCTATGAGGTGACCGAGAGGGAAGGACAACACATG-GCGCCTCATTCCGTGACCTCAAAAGTTGTCTTATTGAGCGCTCTCCCTGGAAAGTGGACTTTTGCTTTTCAAAACAATCTATATTTT--TTATCATCT--GGAGGAGACTTTTTTAAATATATAAGATAAAGACTAAATGGA--CTGTCGCTCCTCGGGCTCTATTG
s HiC_scaffold_1 131342867 2097 + 233722169 TGGATTTTGTTTAT-TGGTTACCTCAATTTTCGGGCCACATTCTGCATTTGTTCCTCCTATCCTGTACTGAAAGAAAGG-----CTTTTAATTACTTCAAACCTTTTATCTCTCC-CACCTTCATTCTTAtccctgaaaataaaaatgattgaaaaacGATAA--------------ATGATTtacagtgattttgtttttagatgtTACCTCTGCCATCTTGCTAGATACATCCAGCACTAAACAGACCACTTTGTCGCCATCCTGGACAACAGAGAACATAGGAGGAGGTGGAAGCTCAGTCCCGTTCATGGGGATACTGTGACTGAAGTCAGGGGAATCCGTGATTACATCCCATGCACTTCTCAGGCTGCACATTTGGTTCTGTAGGTTGGGAGCTTCTTGGTTGTGGGTACTTGTGTTACAGAATTCAACTACCTGCAAAAAGAGCAGAGTTCATCAGAGAATAACAGCATTTCCCCCACCCCAAACACATTACTCATTCTGG-------ATAGGTTAAAGAAAGGGTGAGATAAAAGGCAGACAGTCAACATTGCTACATTCATATACTTCTTTTCTTATGAAAGGACATCAGGCTTACGGATAAACTTTGGCACCTTCTGCTTGAAGCACCAGC-TCTTGTGCTACTGAGGGCAAACTCT-ATTTAAGTTTATTTGCACTGGGATACAGAGAGCAGACT---------ATCATGATCTTAAACAAAACCATCTACC--TTCTTAGTGTGATATTATAGTAAAGGAACACCCCAAGAGATGTTATCTTGGCCAGCCTATTCTTtggaa-atcaataaaataatccTGATCCTTTATTTATGCATGTTT----ATCTAATGATCTACTTCAAATATTGATCCCTGTGAGAATAGGATAAGAGGAAAAGTAACTTAAATTTACttcctgaa--agcttt--catttAGAAATATAGCTTATAATTTACTTACTAATTATTAAACAATGTTAGTAT--CccacttaaaagtatggtttcCATTTCAAGGTAGCATGTCACCACCAGTTCCCAGTGGTTCTTTTCCCACAAACACTTGTATTTCCTGCTA--ACAGTCATGTGAAC-------TTAAAGGTAGAATAGTTCTTATAGACTCTAGTTCCACCTCTGACTCACAGAAACTGAAGCTTGAGAACGTGAATACCACACCAGATATGTGCTTCTT----AGGTGTCAGACAGGCGCAGAGC----CCCCTTTGTTCTATTTGGATCTTTTTACCTGTATATCATGCCTGTGGCTAGGAGACCGTGAGACAT-TTGTGACTGGATGTTTTTTGAGTAGGTCTTTT-AAAGGATC--ACAAAGATTGTGTCCTGTCACAAAGTAATATGGATTAAAATACCTGGAATTAGATTGACTGCAGATATGAAAGCAATAAATTAGAAACATAATAGATagcatgaaaaatacaaaaaaatca-cctAAAGTTACAAATGACTCCTACCTAGCCTTGTCTAAAACTGGGATgaggaaa------------------------aataatcttttaaaaaagcagtatttCAAGTGAGTGGCGTTGGTCAGCTGCAGAAACAAAGAGGAAATTCCACATAGGCAGGCACCCATACTGCTCCCAGCCCA-TGGAGAGGTGGCCCGCAGAT-GTGACTTCCAGGTCTTTGGGAAGTTGGATAGATATAGCAGGTCAT----GAAGGctgatttctctaaatctctaAATTACGCAGCTCTTTCCTATCTGCCTATAT----TCTCTCAG--CAGGCTTCTGGTGAGAATTTAGCT---ATTCTATCTGCTTTCTTCAGAGAGAGCATAAGCTGGCCAGAAGACA----------CAGGTGATGTCTTATGTTTC--TTTTCAAGTG-----CTAGACt--------------------------------------------atgcaaaacaaagaaaaaagccactc----ggcaaat-----------------aaaatt-----aaactataaagTGATTTCATACCTCAAATCag-gaaatg-----------tttttcattttccttaaccTAAAACTT--TCCTATGAAAGGGTACAGA---AACTCTACtacatgaaaaatttattttgtgatcTCTAGAGTTTTGTAA--AACCAGCTTCTCTGGAAAGCAAATTAtcacttttcaaaaaaattttaaatttggtgATCATCTTGGAAGGCGTCTGTTTTTAATATGcagaataaaaactaaatgagTCCTAAGGACCCACAAGCTCTAGTG

a score=6286
s chr3           145087910 249 + 160039680 CAGTGTTTACCTCTGCCATCTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGTTCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAAAGGGA
s HiC_scaffold_1 131034832 240 + 233722169 CAATACTTACCTT---CATGTTTTCAGATTTATCAAGAACTAAGCATACAGTTCTCTCCTTGATTTTCAGCAGAGAAAAAGTAGGCAGAGGAGGTGGTGCCACCATAGGTGTGG------TGCTTTTAAAATCCTCTGACTCTTTGATGACCTCCCAGGTACTTCTGTAATTACACTTTAGGTTTTGTAGACTTGGAGCTTCTCGGTTATGATTTTCTTCATTACAGAATTCAACAATCTAGGATAGAA

a score=7363
s chr3           145087922 232 + 160039680 CTGCCATCTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGTTCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAA
s HiC_scaffold_1 131301493 226 + 233722169 CCGCCATGCTTCCAGATTTATCAAGGACTAAACACACAACCCTTTGTGCAATCTGCAGCAAAGAGAAGGTGGGTTTGGGTGG--GTTTGTTGTCATA---GGAGTGGTT-TTCTTAAAGTCCTCAGATTCGCTGATCACTTCCCATGTGCTTCGGAGATTGCATTTTTGGTTTTGCAGGTTTGGGGCTtctttattgtggtttttttcGTTACAGAACCCAACCACCTGAAA

a score=6935
s chr3           145087924 232 + 160039680 GCCATCTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGT-----TCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAAAG
s HiC_scaffold_1 131085625 226 + 233722169 GCCATGCTTCCAGACTTATCAAGAACGAGGCACACAATTCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGT--GTCTCCATC---------GCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTAATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGG

a score=7167
s chr3           145087924 232 + 160039680 GCCATCTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGTTCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAAAG
s HiC_scaffold_1 131160957 226 + 233722169 GCCATGCTTCCAGACTTATCAAGAACAAGGCACACAATTCTCTCATTGATcctcagcaatgagaaggtaGGTGGAGGAGGTAGTCC--CTTCAT---CGGTGTGG-TGCTGTTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTCGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAGG

a score=7087
s chr3           145087929 256 + 160039680 CTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGTTCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAAAG---------GGACAAGGCAGCCCTATCAGACCAAACAT
s HiC_scaffold_1 131199268 258 + 233722169 CTTCCTG-ACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATCCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGT--GTCTCCATAGGTGTGG----TGCTGTTAAAGTCTTCAGACTTTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAGTTGACaaatagaaaagtaatttttattatacCATACAT

a score=6560
s chr3           145087929 227 + 160039680 CTTCCTGGACACATCAATCACTAAGCAGACCACTCGGTCACCAGCCTGCAAGAGGGAGAACGTGGGAGGGGCTGGAAGTCCAACCCCATGCACGGGGAGGCTATGGT-----TCAGGTCGGAGGAGGCTGTGATCACGTCCCAAGTGCTTCTGAGGCTGCACACTTGGTTCTGGAGGTTTGGAGCTTCTTGGTTGTGTGTACTTTCGTTACAGAATTCAACCACCTGGAAAG
s HiC_scaffold_1 131249617 220 + 233722169 CTTCCTG-ACTTATCGAGAACGAGGCACACAATCCTGTCTCTGATGCGCAGCAGTGAGAAGGTAGGTGGAGGAGGTGGT--GTCTCCATC---------GCTGTGGTGTTTGTAAAGTCCTCAGACTCTCTGATGACCTCCCAGGTACTTCTGTAATTGCACTTTAGATTTTGTAGACTTGGAGCTTCTTGGTTATGGTTTTTTTCATTGCAGAATTCAACAACCTAGAAAG

a score=39633
s chr3           145090627 2510 + 160039680 AGACATATCTGTGCGTCTGAGAAAGAAGTGGCAGCTTACAGGAAGGAGTTTGTCGTCCCAAGGATGTACTTACAGAAGGTAAACTTGGCATGAACATTATTGATCCAGTTGCATTCTGGGTGCTGTTGTAGAGGAATGTGCATCCTTCCCTAAAAATCTTGCTAATAATGCAGTCTTCATGGGGGCAGAGGCCCTTTTCACACACAAAAACGCCTGTAATGTCAGATGAACACCTGAAAGTGGATAAGAAACTAGGAACTGGGTCTCTTTAGAAATACATGGTTTTTTTCTTGATTATCTTTTCTAATAGTTTTT---AAGGATTATAGCTCAGTGGACATGTATAAATATTTTTTAA---TGTTCTCTTCAGGAAATACATTAATTTGGAAATGCAGTCTCTCCATTTGATTTTAAAGCCT----TGAATTTGGACAAGCATTTGTATTGCCAAA-ATCTTTAGCAAGCAGAGAGAGACAAGGTG--GAGGGAAACTTAGAGAGTCTCTGGGGGGGGGGGGGTAAGCGCCAGGCCAGCAACATCCTGAATCAGCATTCCAGTGGACTTCAGG----------------------GAGAATGAATCCATAATGGTGATCTATGGAGACATCCTATCTTCATTAAAATATTCCAAACGTTACT-ATGTGAGTGAGAAACGGTGTCATATGAAAATGAAACCAATGGTTTGTATCTACG-----AGCTGA--ATATCCCATGACTC--TGAATCCTCCAAAGCTTTTTA-ATGTATGGATTTCTATGCATAACTATAACATAGCATGTGTATGGGGCTATGGGCTGCAGAGATACTGACACTCACACAAGGTGGCTATTAATCTTCATGCCTTGcaagaggggactgattggataagttatatcataaccacac----aatggaacactataaatt-attttttaaaagaatgagaaaaatatatatTTGTGTTTATTTGAATTTTCTTGAAGAGCC-----AAGGTAAATAGGAAGTGAATCAAGATGGTTATTCAAAG-------------------------------------------------------------------------------------------------TGATAAGAGGAAGCAGAATAAAAAGAGTG--TAAAGTAAGATGGCAAATGATAGAACGTTTTACTGT--TCATATTTGAAGCGCATAAACATTTGTCCATTTTAAAACGCAATAAAAATTAAAATTGACAATGAAAGAATTTTCTCCTTGCT-ATATGGGCTTGTGATTA----------TTAACTTATTT-TTATGTCATACAATAATTAAATCAAGACAAAAATACCTACCTTCTCA----TTAATTATTTTAATttttacatttttgagacaagctcttactacatagccctggctggcctggaactcacagtgtggacaaagctgaccttgaatttgtgacagtcttcctgcctctgtttctctaaagctcagattataactttataaccatgtgtctctatgtccagttACTTACTGTAATAAAACAAAACAAAACAAAGACCCTTCAAATATTTTCATCTAGTTTTTAAAATATTCAATCTATCCAATCAGTAGTTATTTGAAATAGGAGAGACACCACCGACCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGAGAGGGTTTCAGCTTTTTGAGTGCCTAAAATCTCAGCAACAGGCCTTGCTGGTCAGTGAAGACAGTATCACTCCATCATAC------TCTACTTCCAAAGAGTTGAAATTTGGGT--------TACTTCTCTCCCCATTCCCTTCTCCCTCGTCTCCTACCATCAGAGAAGGGGCG-CATGAAA--AGCATTTGCCCCCAAGCTG---------GCTAGACTTCATTCACTTGACAGAAGTGGCAGGGC-----------GTACCACATGCTCTC---CCTCACTGAAGCTGTCTAACACGTTCTTACTTAGCTTCAAGCATGCAGCTCAGTAGGCTCAGGACTTAGTGTCGAGGGAAGAAACATATTCTTGCCATCAACTAAAGCTTTCCTAAGTTTAG--CTGTGCC---CAAGCTTGCTTG---------------------CTCTCTTGCAGGCCATTT-------------------------------------------CCAAG------------------------------------------------------------------------------TCTATAACCATGATTGAGACC------TAGGATCCCAGAAAGAAGGGAGGGCC---------AGAGATCACAGGACCCCCTCCCTCTCCAGCTTCCATGCTCTCTTCTCT--------------------------------------------------TTTATCCCAATTTCTAACCCTTCTGCTTCTGGGAAACT-CATTCTTACCATCAAACCCTTTGAAGGTTTATCTTGTCCTCTCTAATCTTAGATTTCCTTCCAAGTTCGGCTCAGAAGTTAGTTATTCTCCTTGGAAGGTTGCCGTGTCAACCCCCTTCCCAAAACAAAGCACATGGCCCCTTTTCTTCTGAGGTAGTTTACATTCT-GCAACTTGGGGACTGCTTGCTGTAGTGACTTGTGCTGTGGCACATTGTGCAATGCTTGCATCTTGG-----GAGGAAACAGTGG-------CCGCTGAAAGTATTAAGAGAAAGTGTGTGCTGACTGACTCGGAACTAGAGGCACTGATGGAATCCTTTGCAGAT-CCAGAGCAGGGGACACACCTCTGTTACCACCCAGAAGGGAGGAAAA
s HiC_scaffold_1 131345227 2683 + 233722169 aaacatgtc-ATATATCTTGGGAACAGATGAAATCTGATAGGA----GTTTGTCATCCCAAGGAGATACTTACAGAAGATAAACTTTGCATGAACATTATTGATGCAGTTGCATTTTGGGTGCTATTGTAGAGGAACGTACATCCTTCTTTGAAAAGCTTACTAATAATACAATTCTCATGGGGGCATGGGCCTTTTTCACACACAAAAGTGCCTGCGATATCTGATGAACacctaaaaaataaagagaaactgggagTTGGTTCTGTTTTAGAAACTACTATTTTTTGCTGATTTATCTTCGATAACAATTTGTTCCAAGTATTGTAGCTTGCTAAGTACACGTAAAACATTTCAAACACTGCTCTACTAAGAAAGTTAATTAATTTACAAACGCA----CGCCACTTTACTGCAAAGCATTTTATGTCTGTGAAAGGGGGTATGTGTTGCCAAAGAGTTTTAACAACCAGAATCAAATCAGAAGATATGAGGAACCTAGAGGAACTTT--GGAAGCCCAAGTAAGGGCATAAGAAGCGATATCTTGAGTCAACACTCCTATGGA-TTCATGTCCCTGGATaccaagaaaagaagagaatgaaCATACAatgaggacattttaaaaatttctttc-tcaataaGCAATCTCAAATGTTGCTGATAGGAGTGATAAGTGTCACCTTTAGGAGAGGAACCTGTGAATATCTATCAAGAATCACAGCTGAGGGGATCCTCTGACCCAGTAATTCCTGGAAGACTCAGTAGATTTAGAGACCTGCTTGCATAA-TAAGAAATAGTATATACATAACATTATAACTTGCAGTGTTAGTAGTAATAACAAAAGATGGAATTCAATCT-----------------------AATGAACAAATTAAGGTATACCTacacaatgaatgaaatattataaagcaataatttaaaagaagtgagaaaatacatattcatatttatttgaatttttctgaagaaatactaaaaaatagacaaaatggcAATCAAAATGGctatttaagggctggggatttagttcagcggcataagcgcctgcctggcaagtgcgaggtcctgcgttcaatccccggtactaataaataaaaagactttttagagaggatgaaaggaaacaaaatgaggACAGTGGTGGAAATAAGACAGTTAAgagtataatttttttatattgtgatattt-aatcatatatttacctatttttcttaaaatgcaatAATTGTTTA-------GAAAAATGAATCTCTTCCCTATTAATTTTTAGTTGccattaaacatttaattttatttatttattacattatgTGACATTTAAATCA--GTAAAAACATCTACCTCCTCaagtgtttatcatttc----------tttatggtaaaaaCACTCAata--------------------------------------------------------------ctttcttcttc----tctttgaaATACATAATACA-------------------------CTAGTTAATT-CTAGAATCAGGTAa----------------------------cttatagatttaaaaa----------------------------tgaaa----------agcactcaccttgttgctttaattttattttggccaTCCAAATAGAAAGGTTTATCGTTGTTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCATTCGTGGACGAACACTCTACCTGTGGAAGAGAG--------------AAGTTCCTGACATCACAGCAAAGGCCCTTGCTGGTAAGAAGATGCAGCGTCGTTTGAGTATACAGAACACCTCacttaaaagaactgaaatacgATTCCTTCTCCTACTTCCCTCTCCATTTCCTCTTGCCCTACTCTATATAATCATAGAAAGCAcgatatgaaaatataaatagtcCTGTAAATGCAGAGCAGTGATTTACTTC-TACACCTATTAGAA--GGTAGAGCAGCACCCACATGTTCCACATCATCTCATTCCCTAATGAAGTTGTCTAACAGGTTC-TGTTTAGCTTCAGAGAGGC----CTGAAAATTTAGG-TTTGGAGCAAGGGGAAAAAGTACATCCAGGAAAGCAAATAAAGCTTTCCCAGTCCCCACTCTGTGCCATTCAAACATGCctgactttttgttgttttaaaattttttcttgcaagtaattctctctctctctctgtctctctttctcgttctttctttctggtaccgagaatcaaacacatgacctcatacttgccaggcaaatgcttgggccactgagctatatcgccaGCCCAGTAATTCTCTTATTTATAACAATGACAGAAACCTACGGGTAGGAGCTCGGATGGAAAAAACAACCACCACAATAAAAGAAGGCAGAA----TTCCCTCTCcagctttcactgtcttgtctctgttttctattattattaatattaaatattaataaattattattattcatgttTATGTGTATTTCCAACTCTTATTCCAAGGAAGAACTCCATCCTAGGAACCAAATCCTTCATAATTTTACCT-----TTATAAATCCTATATTTCCTTCAAAGTTAAGACCAGAAACTTAT--TTCCTCATAAAAGTTTCCCACATCAACTATCCTCC-----CAaagcatatatttc--tttttgcaGAGTTATTTTAAGTTGTAGGAATCCAGGAAGCATTTGCTGAATTGACTCAGGTTGAAGTGTATTGTATAATTTGGGGATCTTGGGaccagaggaggaaggagaacaCCCCCACTGAAAGTATTTAG-GAGCATTTGTGCCTGCTCA-TGGAATTTACAAGTACTGATTATGTCATGTGTTGGTGCCAGATTATCTG-CACCTTTCAGTTGCCA--------GGAGGAAAA

a score=4928
s chr3           145092053 255 + 160039680 CTAGTTTTTAAAATATTCAATCTATCCAATCAGTAGTTA---TTTGAAATAG---GAGAGACACCACCGACCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTG-GAGAAGAGAGGGTTTCAGCTTTTTGAGTGCCTAAAATCTCA---GCAACAGGCCTTGCTGGTCAGTGAAGACAGTATCACT
s HiC_scaffold_1 131308714 254 + 233722169 ctgatttttaaagtaattaattcTAGAAGAAAGGAGCTACAATTTAGAATAGTTTGAGA-AGATGAAATACCTTACGGCTTGAGG-TCTTCCCCTGGAT--AAGTAGAATTTCTCTTCGTTGTTGTACTCATCAAATACTCCCCATTGTAGGTGAGCCCATTCATGAACAAAGACCCTGCCTGTGAGAAAACA---TTTCGGTTACCTGAG----TAAAATAAGAATGGTAAGATAACTTTCTTGCAAGAGCAGAAAGCAACACT

a score=6127
s chr3           145092083 154 + 160039680 CAGTAGTTATTTGAAATAGGAGAGACACCACCGACCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGA
s HiC_scaffold_1 131037349 149 + 233722169 cagtgatcttttaaaaaaatttagtcat-----GCCTTGTTGCCTCAATTTTTTTTGATCTGGAGGCATAGTAGGGTTGATCATTGTTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCGTGGACAAGCACTCTACCTGTGGGAAA

a score=5454
s chr3           145092116 231 + 160039680 ACCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGAG-------------------AGGGTTTCAGCTTTT-----TGAGTGCCTAAAATCTCAGCAACA------GGCCTTGCTG-GTCAGTGAAGACAGTATCACTCCATCATACTCTACTTCCAAAGAGTTGAAATTTGGGTTA
s HiC_scaffold_1 130994009 260 + 233722169 ACCTTGTTGCTTCAATAGTGttctttctggaaaaataaaatggctgGTCCACATTATACTCATCAAATACTCCCCACCGGAGATGAGCCCACTCATGGGCAAATACTCTACCTGTCAGAGAACATTGTCATTTATAAGTTTAGAGTTACAGTATTTTAATATGGTTTCCTTATATCTGAGCCCCATCTTCTAATCTAATTGAGTTAAGGAAGTCTGAAATGTGACACTTTTCTTTatgtcaaaaaagttgaaa--tggGTTA

a score=5295
s chr3           145092116 121 + 160039680 ACCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGA
s HiC_scaffold_1 131251861 121 + 233722169 ACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaa

a score=5295
s chr3           145092116 121 + 160039680 ACCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGA
s HiC_scaffold_1 131201519 121 + 233722169 ACCTTGTGGCTTCAATTTTCTTTGACTTGGCGCTGTAGTAAGGCTGATCTTCATTGTACTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTCCCTGTGggaaa

a score=6055
s chr3           145092117 120 + 160039680 CCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGA
s HiC_scaffold_1 131088169 120 + 233722169 CCTTGTGGCTTCAAGTTTATTTAACTTGCTCGTGTAGAAAGGCATCTCTTCATTATATTCGTCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACGAGCAGTCTACCTGTGggaaa

a score=6336
s chr3           145092117 120 + 160039680 CCTGGTGACTTGAATCTCATTCCGTCCATTCACGTAGAACGGTTTGTCGTTGTTATATTCATCGAACACACCCCAGCGGAGATGGGCCCACTCGTGGACAAACACTCTGCCTGGAGAAGA
s HiC_scaffold_1 131163413 120 + 233722169 CCTTGTGGCTTCAAGTTTATTTAACTCGCTCCTGTAGAAAGGCTTCTCTTCATTATATTCATCAAACACTCCCCAGCGGAGATGGGCCCACTCATGGACAAGTAGTCTCCCTGTGggaaa

a score=89426
s chr3           145094677 5242 + 160039680 [encoded data, 5834 characters]
s HiC_scaffold_1 131348493 5225 + 233722169 [encoded data, 5834 characters]

a score=4931
s chr3           145095114 166 + 160039680 CCTCGCGCACCATAGCCTGCGGCTAACTCATCGTTGAGTAGGAAGCTGGGGGTGAAGTGGATGTATCTCCCCTCTTGCCCACACCCTCTGTGCTGTAGGGTGTAGGGATCATCTCCGTGTTCCTCACTCTGCTCAGCCACTATGACATTTGCCTGAAT--TAAAACAA
s HiC_scaffold_1 130994459 165 + 233722169 CCCCGGGGCCCATAG---ATAGATGAATTATTAGTTAACAGGAAGCTTGGAGTAAAATGTATGTATTGTCCTTTATCTCCACATTGTCCATATTGAAGTGTGTAGGGATCACTGCTGTACGTAGGATGAGGATCAGCCACTATGACATCTGCCTAAACAGTAAaagaa

a score=5966
s chr3           145097752 170 + 160039680 CTTACCTTGTCATAGGATTCTTGTCTTACTCTACTGTAATTATGATCCG---TCCAAGTGGCAGGTACTAAAATCTGTACATTTCTGAAAAACACCCTCCTCTTGGTCGCATTGAACAGGTAAAAGGAAGCTTCGGTTATCATTTCCTATAACCAAACAGAAGGGAAGCCATC
s HiC_scaffold_1 130994797 166 + 233722169 CCTACCTGTTCATATGATTCTTGTTTTGGCATTAAGTACTTAGATTTTGACTTCCAGGTCATGGGGATTAAAATGCTTACATTCCTGAAATAAACTCTTCGTTTGGTGGCATAAAACAGGTAAGTAGAAGCTTCAGTTACCATTTCCT-------GACAAAAGTAAAAGCACC

a score=9118
s chr3           145100537 379 + 160039680 ACACACACTGACAGATATGGTAAAGCTTTTCTAAAACTAAGGGAAGGCTTTATTTATTGAATTAAATTTCACAGAGAACATGTCTGGAGACCTTTAGTCACTTGTCCATTCTGCCCAGCTGTGACC-CCTTTATGAGGGCAGCTAGGGAGGAGGTGATGTCAGGCTAAGAAAAAACCTGTCACTGTT-CTC---AATGTGGAGGTCACACTAAGTCTATGTAGTTCTCTAATGGCCATCTTCAGGGTAGGTTCAATGTCATTCTTCCTTCCCTAAAAGCTTTGGGTTTCTGA---CTTTGCCTTTGCACATTATCAGAATAGCATACAGTCTTTAACTAGTATTTACCATGCACACATTGTGCTTACTGTA-Atagttattattttgt
s HiC_scaffold_1 131353885 379 + 233722169 ACACAGAGTGGAAACTATCAAAGAG-TTATCTAATACT--GGGGAAGTTTTATTCACTGGAGT-----TCAGAGTCAGCAAATCCACAGACTTTTTGTCACCTGCAGATTTTTCTCCGCTGTGGTTTCCTCCCTGAATGCTGCTGGGGTTGGGGAG-TAGCAGGCAGCGAAAGATCTTTCTGCTTCTACTCCAGAGCTTGGATGTCTCACAAAGACTCTTCTCTGCTCTACCAGCCATCTTCAGGGTCAGGTTAATGTTGTTCTTATTTCCCTAAAAACTGGAATATTCTGGTATCTTTGGCAAGGCAAATAATCATAGCAACAGACAGAGTTTAACCAGCACTTACCATCTAGATATTTTGCTTATTGAGTACAATCCTCATTTTAT

a score=40193
s chr3           145101258 2887 + 160039680 TATAATCCTCCTCTTAAGAAGTAACCATGTTTACCACTTGTATCATACAGATCTGGAGCAAAAGTTTAAATACTGTCTATAAGA---AGAGAATCATACCCAACATTTAAGCTGGTGGATGAGAGTGTTCA--AGTGCTTACAATAGTCCTTAACATACAGAAAGTACCATTTAGATACTAGTTACCACTACTATCACA---------------GCATATAACT--CTTTATTCCTCTTACTAATATTTATTGGTCATAGACTC-ATGTACTACGGGGAATGCTTATGATCTCAAAGGGAAAAAAAAAGGAGAAAGGAAAAACACAAAGCAGCCAACCAAGCAAAACAATAGACTCCCATCCTAACCTAGACTCCCGGTCTAACGGAACAGATGACAACGTATGAAAGACTAAGCCTCAGAGGCAACTGAATCACACTGGGAAGCATCTCTACGAGGCTCAAAGGAAGATGCAGGGAAAGAGTCCCCATCTAGCTGGCAAGTTGAACTGGAAAGGGTGAGTAGATGACAGGCAATACAGAGAGCACGAAGGTGGGAGAGGGTC--CAGAACAGACATCGGGAGGGTAGAACCACACTTGGAGAACCCAGGAGTG---AGGTGCAGAGCTAAGAGCTAGTTGTAACACTGAGAGCTAGTGAGGGGA------CTCTTCCGG---------ATGAGAACCGCCTTTCCTACTGCCCACCAGTTTGTCCTTCAAAT-------------TCCAGCTATGGACTAGGCACCTTG-------CAAATCTCCCCTTTCCTCCTCTGGCAGCATCATGTATCTGCATTGTCTTCTGATGCTTCTCCCTGGGACCATTGC--CATTTATGTCGCAACCTGCTGTTAGCTTCCCATGGTGACTGTGGGACAGAAAAGACACACCTACttttgcttactactttcccagcacctagttctgtcaaatcggaataaatatttatggaatgaacgaatGCACTTGTGAGAA----ATAAGAACGAGGCTGAGGAGGG-ACCTGGATTGTGGTATGAAA-TGCACACCCTCATTTCTCTTTCCTAGAAAAAAAGGCTCTTCTGTTCAGGGAAGTTTTCACTTTCGTTTCCACCTGACAGAC------------------TTCTGGGCGTGGTCGAGAATGGGCTGCCATTGA---CTGTGTGACTTCCCAG-----------------------------------GCTCCTTCCCAGTGTGGGTTTTTTTCC-----ACTGGCTTATG------------TGCCAGCTATGGTGACTCACTGAGCAGGACAAAGCACTTCCTTTCAGCATTCCTTGGAAGTTGATTTCCTTATGTCAATCTAGTGTGCTCTTAAGAAAAAGAAGTCCCAGCAGTAAGGCAATAAGGACAAAGACCAAGCCCTTAA----CTGGTAAG--------CTAC-------------------AAGTGAGTGCTTCTTGCTATCTTG-----TATGAAAACTGCTCA-----TGGGAGGAGAACTGAGGACT-TTATTCAGT-CACTCTCTGTTTGTGACCAT----AGTTA-----ACCATGGCTGAATTAGAATGTGGGTATGGATGTATTTGGCTCTATATAGAATATATGTAGCTTTGAAAAGACTACCTTAAACAAACAGTCTTGTCCAACTTTGCCTGGCTAAACCCAATTTATGTAGCTTTGCAAAGAATACCTTAAACAAGCAGTCTTGCCCAACTTTGCCTGGTTAAACCCAAACAGGTGTGCTGGGACTCTGCTTAGCTTGTGCTGATAGTTTAGGAGTGATATCCATTCTTGTCTGTCTGCTTTCTATCTCCTGGGTTCTGACAAAGTCCTCCCTCCAGTCATTTTCCTAGATTCCACCCTCATCATCTGTTCCATACAAGATT------------------------------CTTGGGAATCACATCTACTTCTGAAA-----------------CCTGGGT------CTGCCCCCTGGAAGTCACTTTGCTATCAGCATCTATTTCCCAGCCAGGGCAGTCACGGGTAGTTCATTTTAGTACTTTCTCCATCTACCTGGCTGACCCTACAGGAGACACAAC--AAAAGCT--GGAATAGTGACTTGGCCAAATGACGAAAGGTCACTCTTGAGCCCAGG--------------------GCTCT--------CTGTTCCTTAACTCGGGGCTGATGCTT---------AACTGTCTATCCTTTGTGTTTATAAACCTGATGGTATTGGAA---------------GATGTGAAGAAAACTGGGAATACAATTTCTGCAGGTTCATTTCAATGTTTTATAAACTCCAGGAATCTGCTTTGCTTTTATCTGCTGTC-AAGAAAACAAGTTATACAAGT----TAACTAAAGAA-CTAAAGCCCAGCTTTGTTCACGGTCTG-ATCTGCTGGCCAGCTTGGCCTTTGATGGACCTGTGTGTTTCTTTTCATGGAAACAGTTGGTACAGAGCCATGGGCAAAACCAGTGAAGCATCTAA-CAGAATCACAGAAGAGAGCAGACCTAA-ATCTT---GAGCCA---AAAGTTTTGGACACTTTGG-------TTTTGACTGGCCCATTTAAAAGAGGAGA--AAATATGCACATCTGTGGCTGAGATA-AAAGTTCATGCAGC-------GTTTACAAAACATAACCAAGTTAGAAGTGGGGCAAATGATAAACC------------AGGAATGTAAAGCTTTTCTAAAAAATTGGACTGTAAATTCCACACCTCCCTCATCAAATTCTCTCCAATTTCATATTCATTTTCAAAGCCATGGGATAAGGTGGATGGTCCACACAATGGCTGAAAAGCCATTTGTCC---TTGAGTCTCTACCTTG-TCAAAGCACGGCGATAGAGAACAGGAGGTGAGAGGAGATGGGGCC--AGGGCAGAGCTGAGCAAATCAGCAGACCAAGTGGCTCTCACAGGCGACTTACTGAGGAGCTGCTGATGTGGAGATTTCCAAACCGAACAAGACACAAGACAGGGGTGTGACTCAGCGCAGAAGGAGGCACTAAATT--TGAATGCCACAAAGACTTTCCCACACTAAGACCTGGGAGCCTCAGAAGTGATTAGGAGCAG-----CATGTTTGTGTGGAGTTTTCCAGGTTTAAAAATA----ATTGCTTACATTTATTTTCTTAGTGTGTGAAGGTGTG
s HiC_scaffold_1 131354247 3020 + 233722169 TACAATCCTCATTTTA-TAAGTAAGTAATATTACGATCTTCATTTTGAAGATGAGGAACTGGGACTTGT-TAAGttccataaaacagaaaaaataatgtcCACCTCACTGACTAGTGGAGAAAAGTATTAGTTAATGTATTCAACAGTACCTAGCA----GATAGTGACAT--AAATATTAGCCATCACTGCTATTGCTACCATCACTTGACATGCATaaacctttctctcctcctctcacaaatatttattgctcATTAACTCCACACATTGCAGGAGGCACTAAGAATATCAGTG---------------------------------AACTAACT-----------TCAACTCCTTTCCTTCAAGGAACTCGCAATCTAACAGCATCAATGATAAATTAGGAAAAGGCA-GCACTGGAGATAACCATACCCTATTGGGGCACCTCTAAACCAG-TTTGAGGTGAGGTGC-TTGAAAGACTCTCTA---------AAGGCAGGAGCAAAAAAATTGAGCAGG-ATTAACCAAGATGGAGTGAGTGATGTTGGGGAGGAGCCTTCATAGCGAAAGCCTGAGGTAAAGGGCTGAGTGGGGAGAAttcaaaaatgtagaaatgaagTGTCAG-----AGGTGCATCACTGAGGAATATTGAGAAGAATGTTCCCCTTCCAGTCCCTCTGCACAGAATTCTCTCTTGCATCTTTTCACTAGGTTTTGCTTCCAATGTCCTTCTGTGTCTACAAACCTGAACTGAGCTCCCCAACTAGGTCAAACCCCATCTTTCATACTTTCACAGCACCAGGTACCTG-----TCCTTTGCAGCAAGAGCATGCTCACATTGTTACATTTGTGT-------GACTGTCAGCTTC---TGTCAGCTGCGTGATAGAAAGGCCATGTCTGTTTTC----ATTGCTTCCCCAGCATCCAGTTGATTTaactctcaataaatgttt---gaatgaatgaatggacttagGAGAACTAAATAAAAGCCAGGCTGCAAATGATCCCTAGATTTCATTGCAAAAATGCTGCTCCCCACTTTTGTTTCCTAGAAGGTTA--CTCTT-TATTCTGAGCAGTTCTGTCTT--GCTCTCTCCTGACAGTCAGCTATTGATCTTGGTTCTCCTGGGTGTG-TTGGGAATGGAAAGTCACTGATCACCATGTGCCTGTCAAACTTGTTTACCCTACAGCTTAGCCTTGTCTTATGACGTTGATTTCCAGCATTAGTTCCCCTCCTCCCCACTGGCTGTTAATTTCGAAAGTCTTCCTATAATTGGTACTCAACCAGCAGAATTAAACAATTTATTTCAActtttcttgg---tttattttcttATGCCAGTCTTTCAcgcttttaagaaaaattataccCAGAAATAAAACAGTATGTTTAAAACTTAAACTCAGAAGCAGATTGTaaaaatagtttctatttttGCCCTCTCAGAAATAAGGCAAGTGTTTCTTGCCACCATGAGAGTTGTGTAAATTTTCCAATGGATGAGGAGACAGTTGAAAACTGCCACTCAGTGCTCTctccatttgtttttattatcagtTATAATGACCCTGGT-------GGGTGTGAGTATGGAGGACAGCAGCT----ACGGTGCGCATGTGGCTTTATAAAAACCA---GAAGCCAGCAATCTTGTCTAGCTTCAACTGGATTAA-----------------------------------------------------------------AATCCGAAC-----CACCTGGTGTTTGCTTGCCTGGGGCTGAGAGTTCAGGC-TGACATCTACTCATACCTACCTTCATCTCGGTTACTTGTTTCTAG------------TCTGGTCGCTTTAGGGGACTCTACTTTTACTTCCTGTTCT-TACAAGGTTTCCAGTCACTGACTCATTTTGAGGCTGCGTCTTAGGAATCACATTCACTTCTGAAAGTCTTTCTTTCCCATCACCTCTGTTCTGTCCTGCCCTTTCAAACCCATTCTGCTGTCAGAAATCAGGCCTGGACCCAG--AATAATGGAAAACTCTTTTTACTGCCTTCTTCTCTCACACGGCTGATCCTAAAGAAGTCAAAGCTGAAAAGCCAGGGAAAACTGACttgattaaattattaaaa-ttacagATGAGCATAGGTAAAGCTCCGTTAAAGATGAGCTCTGGTAAACTATGACTTTCAACACATAATTTATGCTTTTATGCAAAAGGTATTTACTAGTCATGTCCATGGATGTTTTGAcatctgagaaataaaatacacctgAGGTGAAGGAAAATGGGAATACAATTTTCAAGGACTTATTTCAATGTTATATAACCTCTAGGAATCTGCTCTGCTTTTATCtggtttcaaaaaaaataagttattcaatttcagtaactgaagAATCTAAAGGACATCTTTGTTCATTGCCTGAATCTGCAGGTCAGCCTGGCCTCAGATAGgcctgtctctttcttttcaaGGAGCCTGCTTGTGTAGAGCCCCAGGCAATGTGAATAAACCATCTAGTTGgtgtctgagaagtgaggagaTTTGACATCTTGACGAGTCAGAGAAAGTTTTGaatcttttcagtctttttttcaacaattctatttaaaaaaagaaagcagagatgc---TGTGCGGTTGGGCTATAAAGCTTATG-GGCTAATTTGGTTTATGAAATG-AACCAAAGTAGaagtgagaaaaattataaaactcaagATATAAACAGAATTGAAAAGTTTGCCAAGGGCCCCGGTGGCACATCTTGTACTACCTTTTTCTCATTCCCTTGAAATTTACACACATTTTCAGAGCAACGGAATGAAGCAGATGGTCCACACAAGGCCTGAAAA--CATTTATATCTGTTGAATTACTATCACGCCCAAAGTATGGAGATC-AAAACAAAAGGtgagatataataaaatttaaacacagtACTTTGCATGTGAATAAACCAAGCAATACCTGTAGGTAATTCCTTGAGGGCCTCGTAATGGAAAGAtcccaaaattaaacaaaacatctTACAGG-------------GTGGAAGGAGGCATTGAATTTATATATGGTACATGGG---------ATAAAGACTTGGGAACCCCAGAGATTATTAGAGATAACTCCTCATGTTAGTACAGTGCTTTACAATTTTCAAAGCACCTCAATATTTAC-TTTATCTCATGACTACACGAACTTGTG

a score=31986
s chr3           145126031 1257 + 160039680 ATATAAAAGGTCTCCAGTTTATGTGTTAGAAGTAACTTCAAGCTTATTTGT----CTGTTATTAGGCTCAAGCAAGACGTCGCAAAT---ACAAAGATGGAGTTGAAAGCAACGCTTAAGGAAGCTCAGTTGGCATCCTGTTCAGTTGAATTACTTTTGCCATTATTTAAGAACACTGTGGAAGGAATTAGTCTAGAAAACGTGAGTGTTGGACTTAGAATGGCTAATGAGATGGGAAGTGAGCATAATATTCAGAAGGCCTTGACCAAGGACTCAGATCTCAAT--GTCATGCCCATGAATGCGCTCATGATACCAAATATGGGGGCTGGGGTAAGAATTCTTTATTCCTG--TCATTAGCTGCAGTTCTTCTTATAAAAG-----GTTGTCTCAGCCTATAGTGTACTTAGTAAGAGACTAGAGTGGAAAGTACAAATTGGTATGTGACTGACCTGGCCTTCAGCTAGAGAATGAAACTTTCTGAAGGGTGGATTTAAAACTAAAATTGTGGTGTGCAGAGATGGTTCAGTGGCTGATcagttgcagaagagatggttcccacttctggcctccatgggtaccagacacacacagtacacagacttgcagacaaaacactcatttacataaaatagtaataaaTAAATCTTTTAAAAATAAAACTCCCGAGAGATGCCATGTATCTGTTTACTGTGGCATCAGTTGGAACAGAATGATTTTACGATTTCAA-ATAT----GCTTCACTTTGGAAC-AAAGACAGCCTGTGGTCTGCACATTAGCAGAACAAATACTTCAA-AGCTGTGGGGTTCTACAACTTCCTCTTATTTTGATTTAAC-CACTGTGTAGTGCATTCTGT---CTGTTATTGGTAAACTTGCCAGGGCTTACCAATACTATATTCAAAATAATGGTTTTGAAACTAGG--AAATAGTTCCTCACTGATAATACTCTAGGGTGTTTTACTTAATGTTGTCTTAACATGTAGGTATGTGCTTTTTTTTATTTTGTCAGGCTAATCTTTCTGCATCCAGTTTGAAGAAGATTTTTGAACAGAACGACATATTATCAAAAGAATTAGACACTTTTAACCGTGTGAAATTAGCCTTAGAACATCTTATTAAACAGACTGACTATGAACAAGTAAGGCTCCTGTGCTGTG---TCTGT----AGTGATGCCTCCCACTTGGAGGATATTTTATTTCTCTAACT---GAATATAAAATATTGGTATA-TGGAAACAAAAGTAATTCTTTGAATTTTTGTTTGAAAT-ATAATTATTAAACT
s HiC_scaffold_1 131385624 1108 + 233722169 acataaaaagt---------atgtagtagatttaatttaaattttatttgtgcatATGAAATTAGCCTGAAGCAGGACATCCTAAATGATAAAAAGACTGAATTGGAGACAACACTTAAGGAAGCTGAGCTGGCAACCTGTTCTTTAGAAGCACTTTTACCATTATTTAAGAACACCATTGAAGAGATTAATTTTGCAAATGTGAGTATT-GATCTATGACATCTAATAAAATGACAAGCTGGAATAATGCACAGAATGCATTAAATAAGATCTCACATTGTAAGTAGGTATGCTTACATATGAGTATTTGATACTAAAAATGGGAATT--TATCAGTGTCCTTTATTCCTGTATCATTAACTATAATTCTTTCCCTAAAAGATACAGTAATCTCAGACC----TGCGCCAGGTGAAAAGTGAAGCTGGAAACTATATTTGGGTTCTTGAGT-CCCTAACCTTTAACGAGAGTATCAGTTCTTCTCAATGgtgaatttaa----------------------------------------------------------------------------------------------------------------------------------------------aagtaaattttctaaGAAAGAAG---------------ATATCTTTGTTTTCTATCACGCAATTTGGAA-------ATTTTACAATTTTGACATACTAAGGTTGGAGttaggaacaaaaaataaattgtgtaCTATAACTTATTAGAATAAACACTGTAATAATTTTGGAGTTGTAagcccttgttttattttaatttaatgcacTATGTAATAGATCCTGTCTACTATTACTGTTAAGTTTGGCAGAATCTACTATTACTGTATGCAGAAGAATGGTTTTGTTGCTCGGGAAAGTTATTCTTCAATGGTATTACTTTAGAATG-TTTACCATATTACGTCTTA------AAGAACCTG--TTCTTATATTTTGTCAGGCCCATGTTTCTGCATCCAAGTTAAAGAGGATTTCTGAACAGAAGGAGATATTAACAAAAGAgttaaatacttttaaacatgTGAAACTAGCTTTGGAGCATCTTCTTATAAAGACAGACTACAGACAAGTAAGGCATCATTGCTGAGCACTCAGTTGAGAGTGATGTTTTCCACTTGAAGAATATATTATTTCTGTAGctataaaatttaagatattgatatatttgaaatggaaataattcTTTGAACTTTCGTTTGAAATGGTAGTCATTAAACT

a score=26877
s chr3           145127818 2075 + 160039680 TCTTTCTTACAGATAGGAGACAGCTTGCTATGCTTGT-TGAAGGATCTCAGTGACAATGAAAGTGAGAACAGAGTAAGCGTTTC--CATTTGTTAGCCATTCTTTCTGACTTTTTTTTCTTTGTATGCTGCTTAGTTTTAACCAGTATTACCTAAGTTGTGACTTTTCTAATTCTTACCTGTGTTTTCCTGAAGAACCTTGAGGAAAAAGTACTTGAAAAGGAGACCTATATCCGTGAACTCTCGTGTCTGTTTCAGAATGAAAAGGTAAACACAGTTTGAGCTTTTGAC-----TTTGTTATATTTTGTTAGCATTGGCCCCCTTTCCCTCCCTCTCTCCCTCCCTGTTTTCATATCCTCAGTTGTAATCACAA------------TAAAGGCTTTTTGACAGTTTAGATC------AGTAT----TAACTTATATGTATC---AGATAGAACATCTTTTTAAGTTTTTGTTGGTTTG-----TTTGTTCTTTGGGGGTCGATTTTGCTATT--TAGTCCACTTGGCATAAGTTACTACAAATTCTATCCTTCTGGTTTGGGTGATGGGTCTGTCGGAAGACCAGGACCTGTGATTAGTTCCTAAAactcttgtaattctggtcctggaaagagcagagatgggaaggaaggttcctgtgactcactggccagccagactgctttaattggagagctccaagccagtgggagagcctgttcaggggagctggatgacaccCACATTGTCCTGTGTGCTCTAATACGTCTTATGTGTGTGTCCCCAAACTTGTACACAGCTGAAAACATATAACTTATATTTTATTTTTGGTA--AGATTAAGTAG--TTGGTGTTTGGAGGAAGACTTTTGACATACTTA-AGTCTTCCTTGGGAGGAGAGATGGGAAGATT-----TGTAGGAGATGATTAGAAGG---CATTGAAT-ACATGT----GCAGATTTTACCTGCAGCTTTTATGAAGTACATCT---ATGAGGCCACAGTATATGGAAAGGAATGTTCTATTTTACCATCTGCTCAGGTTGAGTCTGACTGGGGGGGGGGGGGGGTCTAACAATGACAGACAGAGGGAACACAGTAACTTGCTGTT---ATTTT----TCTTTTACAGGAAAGTGCTTTGAAAGCAAACAGGCTTTCTCAATCAGTCAAAGTAGTGCACGATCGTCTACAGCGCCAAATTCAGAAGAGGGAAGCTGAGAATGAAAAGCTAAAAGAACATGTACAGGTTATAAGTATTCA-----TTTTTATAG-TTAAGTAA-GAAAGTAATGAAAAACTAACTGTGACAGCATGGCTTACTTGTGGAAGAAAGTGATAATAAGAGAATGTAATTTTGGCATTTCTGTGGGAAACACACTGAGTATAAATCTCAGTCATGAGATGTCTCGCC-----------------TGAAATCTCCATATGAAAATGTTTTTA----------------------------------TTTTATATTTCAATCCAGGAAGCACGCGTGGAGAGTGAGTTTCTTTCCA-GTTTTTCTCACGGTATAGCTAATTTATGTTTACTGTGGACATTTTTATA------AATTATGGAAACATAAGTTAAAATAGCTTAAG--ATCAA-------CAaactgttgttaaaattttgttgtatattattccagtcttttttccatatctctatacccttttatgggtatCCTTGCATGTATCTAATAGGCAGTTGGGGAGTTAAGCTTCTCTTGTTACCAGTTATGA-----TCACTGTGAATGAGCTCAGTTCTCATATTCAGGCCACTGAGAAGTTC------------CCTTTGTA--CTGATG-----------------------CAGTG----------------------GGAAGGAATGTTTAGTTTAATTATGTGTTCCTAATCACAGCCA-TTTGAGGTCAGAGCCTGAGAGTGCTGCTACATGTCACAACCTAATTAGATCCACTGTCTTATTTTTTATCAAAGGCAAAAAAC--CAGTGTTCCTACCTTCAGAGACTTCTACAA---------ACTAAGGGCAAGGATGTCTAGGTAGACTTCAGTGTGTTTTTATTGTCCTGACTCATAACAGACATTTGCAGCCTGTAGCAC----CTGCTTCAAGAACTCCATGCACGTGTCCTTCAGTGGATATACAAAGAGTGTTAGTGTCCTTTCCCAAGGACGTTAAGCATGCGTATGGAGAATGTAATGGGTTTCAGTTAATTTTGTTCTTTGTTAATTTC
s HiC_scaffold_1 131390291 1947 + 233722169 ttttttttatagacagGAGACA-TTTACCCAGTATGTGCTAAAGATCTAACTGATAATGAAAGTGAAAACATTGTAAGTGATTCTTCATTCTGTATCCACTACTTTTGACTTGTTTTGCTT-GTATAA-----------AATTAGTATTGTCTCAGCTGAGAAAtttct----tttacat-tgttttt-tgaagaatcttaaGAAGAAGGTACTTGAAAAGGAGAACTATATTCAAGAACTTTCTTGCTTGTTTCAGAATGAAAAGGTAAGCAAATTTTGAGCTTTGGAACTCAGTTCACCATGTTTTCTTAATACAgacttcttcttcctttct---ttacatCATGTTACTATATccttaaaagtaaacaaaagtatGGAACAAGGAAAGGCTTTTTGACAATTTAGattatttggaatattttataaGCTTTATGTGTTAAAAGGTAGCAc------ttaatttttctctgttttaaaaatttttttgttttaggg----TTTTGTAGTTAACAGTGTACTTGGCATAAATCATCAC--------------------------------------------------------------------------------------------------------------------------------------------------AATTTAAGAACTC-------------------------------------------------------------------------------------------tgta------taaaaatgtg----ttatatttcA-ATTTGATAACAAATTAAGGAATTTTAGTGTTTGTAGgagtattttagatatacatataatttttctgAGGAGTAGAgattggaaatttttttctgcaaaaaataGTTGTCAAGTGTCATTAAATAAAATGTGGGGGAAAATCTCCTCCCTAGTTTGCGTGAAATATGTTTGCAATGGGGGATCACTTTGTGGaaagtattttgc--ttttataagCCTTTGAGATC--TTCTgaattgtaaaa---------ttaaaagtgttGGTGGGAAATAGca-aataactttttgttttcattttttcgtCTCTTTTAGGCAAATGCTTTGAAAGCAAACCGTTTTTCTCAATCAGTAAAATTAGTACATGAACGACTACAGCTCCAAATTAataaaaaggaagcagaaaatgaTAAGTTAAAAGAGCACATAAAGGTTATAAATTCTTAtccattttttatagttttagtgataaaattcatgaaatattAG----AAAACCATTCCAGAATTGTGGAATACGGTGATTATAACATAGTGCAGTGTGAGCACTGGCAT-GGAAATTCATCTAAGGTAAACCTTAATGGTAAGAATTCTGGTCCTTCTAAAAATTAGGGTTCAAATCcaaatataaaaatgcttttaaaagggTTCAAATCCAAATacaaaaatgctgtattttttagTATCATTCTAGGAGGAATTAGTTAAGATTGAATTACTTTAAACATCTTTTTCATGATACAGTTAATTTATGTCTATtgagtaaa-ttttataaaaaacaaatataaaggagaaaatgaaaactacTTAAGccattaaacataccaaaaccattgttaacattttggtatgtgtgtttctaatcttttttcc-tatatctatacatgtatacatacatatatgcataccaCAAA-----------GCAGTCAACACATTTTTGTTATTAACCATAAAAATTTAAGTCTCAGTGAACCTGGCT-TGttattaaataatttgaataattCTTATGTTGTACATCTTTGTAAGTTAATGGGATTATATGCAATTACAAGgtacaatgaaaggaaaaataaaatacaagtgtaGGGAATTTCTGGTTTATTATTTTGTTGGTGGG-ACAGTCACTTTAAGATAAGAATTTAAAGTTGCTATCATACTTAACAACTTAACTGGATCTACCATTATATTTTTTTGCCAAGAGAATAAAATGTAGTGCTCTCATTTTTAGCGAAATGAACAGTTTTGCCCCATGGAGTCCAAGGACTTCTGCTTAGACTTT--TGTGCTTCTA-----------AATTACAGCCACCTGCCGCATGCGTTACAAGGCTGCGCCAGg------gtttacatatttttctttgaatg-acAGAAAGCATTTG---CTCTTTATGAGGACACTAAGTAGGTTTATGGTTCgtgta-------------aattttcttctttttaagtctC

a score=52156
s chr3           145132350 1620 + 160039680 GTCATATTTCATCACAGGGGCTGTAAGTAAGTTGGTGGTTCTGTTACAATAACAAGTGTGGGTCTCTT--------TAGTCATAATTTTATGTAGACTGAAGTCGTTTGAATTTTCATTTTTTAACTTTTCACAA-GAAGCTTTGGTTATATCACCCCTTATCACTTTAACATTTTAATCA-ATCATGATTAGCTGTTTTGATAAAATATGTGTGGAAGAT-ATGTAC---TTTTTACAATATTTACATAAACATTGAGGCTCAGATATAATT--TAATTGTTTCTACATTCTTTAGAGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAGGTGAGTGTGCATGCTCTTACAGATAGAGGATGCTACCTGTGCTTAGAGTCAGTAAGAGAGCAGGGTTACAGTTAGCAGGGTTAGATAGCATAGTTAGATAGACTGGTTGGCAGAGTTAGATAGTATGGTTAGTTAGACAACATAGATAGTTTAGGGAGCATAGTTATATGGATAGCATAGTGACTGTACTTATCAACTTTAGTTAGGTAGCATAGTTATCCTTAGATGGCATAGTTAATTCGCATAATTAGCATTGTGAAGCTTTAAATAATGGTGTCATTCTTATCCTTGTTACTATTAATGTTATAAAA-TTTGCTCATCTTTTTTGCTTTGGACTTT----------------------------------TATTTTGAATTGTGT-AGCACTTTTGGGGC----TACTAAAAGGAGATGTGAGT----GTATGCA-------ATACCCACTCCCCAACACACACATTCAAAGCTTCTATGGCAGGTAAGGATAAGCCTTCCTCCATCTTGcctactggaaagttacagtgcgtattaacatactaaa-ggcctgaaaaggctttcag-aatgcagt--aatgagggcatggaaggaagaa-ttcccac----acttaaccacagaactcttcttgtacccacagagcagctcctggaactggttctgagaaatatcagtttgggaaatgctgATTTATGTTATTAGACCATATGACTTTATTCAGTAA-----TTCATTTAACCTCTGTAATGCATTTGAAACCATATGCTGACGTAAACAAAACATGTGAAAGATATCTTTGAGTATAATACAGAGCTGAAAAATGGAGTTAGTGCTTTGTTCTTCTTGACAAATCATTATTCTTATTCAGTTGCCATCCAATAATATATTC-TTTGTTTCCATGTCTCACTAGTATCCCACCTCTTCAGAACGTATGCTAAGGCTTATAGGTTTATTAGTAGTTTGTGGGAATGAAAACAGACTTGTATAAAAGCTTGTACAAACAAAACAAGTTAATATTTTATAAGCTCAAATGTTACCATTTTAAGGCTCTAATACTTAACTTACGTTCACTTGAGTACAACTAGATATTAGAATCGAAGGCTAGGCTCAACTTGTATAAGGTGG--GACCTGGCTGG--------ATACCTAGAGATGCT-TAGAGTGCTGGACACTAA---TCATGACACTGACGCTCTTGAGGGTTTCCCCCTGAGGTAGC
s HiC_scaffold_1 131394707 1459 + 233722169 GTCCTAATTAATCACCGAAGTTTCAAAGAAATTAGTATTTCTATCAGAACCACCAATATTAGTCTCTTAATAATGGTAGAATTAGTTTTatgtaaatttacatattttaaattgacattttTTAACTGGTTACAAAGAAGCATTGGTGAAA--ACATCTTTGCATTTGTGCTTTTTATTCATCTTAGGACTAGCCATTTTGATAAAATTTGTGCAGAAGATGATATAcctgtttttataatgtttatgcAAATATTGGCGTTCTGAagtaattgttaatt---------ttttttagaacTTAGAAAGCAAAATAGCCACATGGAACTTGCAATTGAGAACGAATAAGCACGAGGCTGCAGCCATGAAAGAAGCAAGTAAGCAGAAAGCGATAGCTCTAAAAAAGGCATCGAAAATCTACAAACAGAGGCTTGAACATTTTACAGGAGATGCTGAACACCTCACTTCCCAAATTAGGGATCAGG-----------------------------------------------------------------------------------------------------------------------TAGTACG-----------AACATA----------------------------------------TGTTCTTTTT----------------CAAAGATACACT----TTATGTACTTGGTTTGTGTTGTTAATACCATGGTGCTTAATGTAGTAAGTTTAGCCTT-------CTACTGTTGATGCTAGAAAACTTTACTCA---TTTTTGctttagtcttttattttgcaagcttacataaaaatattacatttctattttgaattataTCAGCATTTCCTTGGCAGTTTTGTGAAAGGAAATGTTAattatattacacacacacacacacacacacacacacacacacacacacagcttctaAGGCCAACTAAGGTAAAGCTTCATA--------------------------GCACATCAGCATATTAAACATCCTAGAGAGGCCTCTAGAAACACAGTGCAATGAGGGTAAGGAACTAAGAGTTTCCCACATTTATTTAACCACAGAACTCTTCTTTTCCCCACAAAGCAGCTCTTGGAACTGGTTCTGAGAAATATCAGTTTGGGAAATGCTGATTTATGTTATTAGACCATATGATTTTATTCAGTAATTCACTTCATCTAACCTCTGTAATGCATTTAAAACCATATGCTGACGTAAACACACCATGTGAAAGATATCTTAGAGTATAGTATGGAGTTGAAAAATGGACTTAGTGCTTTGTTGTTTTTGacaaattattatatttattcagTTACCAgctaatgaaatatttattccttttaatgtCTCACTAGTATCCCATCTCTTAAGAACTTATGTTAAGGCTTATAGGATTATTAGaggctctaagaaatgaaaacagatttgCATAAAAGCTTGTGCAAGCAAAAcaacttaatattttataatctcaAGTGTTAACATTTTAAGGACCTAATATTTAACCCACACTC------------------ATAAGCATTGAAGACTTGGTTCAAAGTCTAGAAAGTTGTTGACATGGTTGTTAACAGCCATGGTTGAAGATATTCCAGAGTG--GGAAAATAGCTTTTGAGTCTTTAACACTCTTGAGGGTTTCCTATTGAAATAGC

a score=58136
s chr3           145134621 2676 + 160039680 ATGAGGACTTTAAATATCTAATATACACATTTCTTACTCATTTTTAATTCCATGTT-----GTCACACAT-TATATATTATAATAGAAACTAC---------CTTTACAGTATATGTTATGCCTATCTCTTGCTTCATAATTTATACTAAAATTTATTTTACACAAAATGTGAAATCTGGGTCTAGTCCAGTATAACACACATTGCTGTG-AAAAGCATAGACA-ATATCTTGTATATACAAGATG-------ACCTATGCATGAATGATAGAAGGACAGAGGAAA--ATAGTA--TGTTAACTGCTGTCCAAACCATTTCTGGGTCCTCTGATGTGTGAGTAACTGGCATC----------------------------------------------CTGTTTTTCTGTGGAATGTGGACAAAGGCAGAGAGGCTAGAGCTTTGAGGTTAGATCTGCAGAGGGCTACT-GACATTtatttactgagtgtgtgctgtcttcctggagccattcagaaccctacagacggca--atgaaccaaacagacaaaaatccTCCTTTGTAACTCTCATGTTCACACTGGCTCAGGCAGTGCTGCTGCCC-CTCTTTGCTGACAGCAGC--CGCATAGTCAGGCTGACAGTG--------------------ACCTCTG---CAAAGACAACTGA----GCA-TCTGAGATGCTGTGAGGCTGGGGAATTGCAAATGGTTTTTATATATTATGGGAAACTCTTTTTCTCACATGTATGTGGT----------TCTTATGTATAAAGAATGGAAACTGAAGA--TGAATTCATACACATACATAAAATAGAAGTTATTTCTATTAATTGTGAAGTATTACTTATAACTAGTCATAAGAGCTTTTTTGAAATGGTAAGTTGGAATT-TTACTGTGTGCATATAACATAATAGTCATGTAGGTATTTTATTAACGCTCACTTTAAAATTTTACTATAATGAAAGCTGCACACTA------------AGAACAGTTGTGTGCTTTACTAGAAGAGTGTTTTCATATTTATAATGTATTTGTATATAAAACCTGAAAAGAAAACACACACTTTTAAGCGACAAGCTGAATGCATT-ATGTGTTCCT-AGGAAGCCAAGCTGTCTGAAACAGTTTCAGCTTCCAGTGACTGGAAAAGTCAGTTCGAGAAAATTGCCATAGAAAAAACTGAGCTGGAAGTGCAGATCGAAACAATGAAAAAGTAAGCAG-GAGTTCACA---CTGATTG------------------------CTCTTCAGTGCTGCATGGTTGGTTTTTCTGGGTATTGTGTAGCGAAGATGCT----------------------------TTCAATGCT---AGGTTTTCTGCCTCTACTATAAACAGTGCAC----TGATGCTCCCATTTCCTCTACTATAAACAGTGCGCTGAAGCTCCCATTCCCAAAGGTGAGACTTGCACGGCAGTACTTTGTGCTTGAGGATGGATTAGTGTTATTTCTTA-------TAAATATAGATACTTTGTCCTAAATGGAAGTGATTTTTCTCAATTAAACAAGG----------AAATGAAAGTAGCAAACTTTATAAGTG-----TTTTAAAGTCCAAAAATTACTGTCACTTAATTCAAGTGACTAAAATACGTAATAGAATATTAATGAGTAAAAATACATACCTTTTGTTCTTTGACACT-GCTGCTGTTAACTGAACAATAACAGACC-GTGATACTT--AAGTTTTCTTACCATGTTGTTGTGCT-----TTACTACGGAAAACTAAGTTGTAATTTGCTTATaaagatgaggtgtcactgcctggcttcctttaaacttatctgcaactgtgcatgtatgtgtgtgtgtgcatgtgtgtgtatgcacatatgtgtgcatatatgtgtgaattcaagagccaggcagacatgcatcctgtgggaag-----------------tagaataga-----------------------tggtGTCATCAGTAGGTGCGTATTTATAATCCTGGCTCATTTGAGCCTAGCCCTGGGG--TGCCACTCCTATTCCCTTGCTCCATGCGTCCCGCTACCTTTCTGTGCTTTTTAAAATTTTAGCCAGTGCACCCTACCAGAATAATTTTA--AAAACACTTG-------TTATTTGAATGAAAATTTT--------------------------CTGTGCTTTCACTTATTTTATAAAGGCAAATCGCTAACCTTTTGGAAGACTTGAGAAAAATGGAAACTCATGGGAAAAACTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCCTAAATATTGAGAATGTGAAATTAAAGGTAGCAAgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATGCATGCGCGCGCGCACTTAGCAGCAAAGTTGTGGAGTGTTGGC--------TAATGCTCTGCATCTCGTGTCTCTCATCTTCCTCATGATATTGTATT---ATGAAGGTAAATAATTTCTGGATCT----GTCAAGTGTATAAAG-TATGTATCTG--------------------TGCTTATATTTATGTTTAT--------------------------CTATTTAA-------GTTTTAAGATTTTTAATTACATGTACAAAAAGAAGTTTAAATTTCACTTAGCAGGAC-----AAGCTTGTAAGGCTGCACAACTTTCTCTTTGTGTCAACTTTCCAACAGCTTATTT--ACTTTCTAATTCCAGCA-----GTGGATCATCCAAAATTGCATTAGCTTTACTGCACAAAAGTTTTTGTAGGTGTCATGGTTACCATATGATACAACATCAGACTGGATCTGTGTGAAACCAGAAAGTGTGTTCTTGGCTCCTTTATAACCAGAAAGAA-TTTCCAACTGAGTCAAGTCTGAGGAGTAATTGGTTTATATGTGTCCCAGAGAAGAGATGGGGGAGGAAAACTTTAGACTTTCTGAAAAAAAAAA
s HiC_scaffold_1 131397254 2909 + 233722169 atatgaattttaggtaACAATTATATAT--------CtcatttataaattcttttttataggtaaaaCATCTAAATATCTTAATTCATATTATAAATGTGTACTTGGTGATGTATATTATATCCAACTC------CATACTTTGTATTAAATTTTGTCCTA----AAATATGAA--CTAACTCCTTCC---TATCAGAAATATTATTATACAAAAGTGTAAATTTCTGTCTTGCACATAGCAGATGCATTGTAATCCTTGTTTGCTAAAAGAAAGGGTAGAAGGAATCACAATAAATACTAACTGTTGCTTGGACAATTTCTGGGCCTTCTGATTTCTAATTCATTACTATCAGTGAATCATCACTAATTCATACTAGAAAACTGAATCCCattcagtttgtttttctctggAATGTAGGCTGGGGCACAGAGGCTACAATTTTTTAGGTGGATCTTTGGAGAGCTGTTTGACAGTTATTTATTGCATGTATGCTGCGTTCCAGACACTATCAAGGTCCAAGGAAAtagaatgataaataaaatagagaaaaatccc------TAACTTTCAT--TCAAAATAGATTAGACACTACTATTTTCAGCTCTTTGCCGGCAATAGCAGTGCTTAGT--AGCTGGTGGAGGTGATGCCACCAGAGCTTACATTTTTGTTACAAAGATAAATCAAGCTGCACTATTGGATTCTCTGAAGTTGTGAAATTAGGAATAGTTTCTATTTatactg---------------tacatatttatggaatTGTTAGCATCTTCTGCAcatgaaatgtaaaatgaaaagttGAAT--------------AATTGGGAAATTAtct----taattacaaaatatt--tgataGTTACACtgataaacttt---aaaatgttaagtTCGAACTGCCATTGTGTGGATATAAAATAATAGCAATGTAGGTATTTTGTTAAAG-----TTTAAAACTTTCCTATATTCAAAGTTAAACACTATACTTTTCTGTAATGAAAGTTCCATGCTTTATTAAAAGAATGTTTTCTTACT-GTAATAAGTTTGTGTTTAGGACCCCtaagaaagcaaaatgtttttaaattaa-----gaatactttcatgtattttttaggAAGCCAAGTTGTCTGAAACACTTGCTGCTTCCAATGCCTGGAAAAGCCATTATGAGAAAATCGTAATAGAAAAAACTGAGTTGGAAGTTCATATTGAAAcaatgaaaaagtaagaaaagaatttAGATTTCTGTTTAGGAGAAGTATTTTTAGTTCTTTCCTCTTTCAGTGTTG-GTATTTGGTTCTTCTGGATCTCATATGGTAAAGGTGCTATACTATCTGCATAATTTATTTTGCCACTTAAATCCTTTAAACTTTTCTtactatattataaaaataataaaaagtgat-tACTCATTAAACCTGC-ATAAGTA-----------TTCCCATTTTGAAAGTTGA-ACTTGCAAA-----ACCTCATCTTTGCAATTGAATGTTTGTCATTTATTAATTATAGTAAATGTTAATACTTTCTC--AAGTTGAAGTGACATTTCTCAAATAAGAATGTGTAGTTCTATATAGGAAAGTTATAATCTTAACAAATAAAAGCTTTGAAAGtccaaaaaatatt------tcataacaatAACTTAAATGCATAACaaaaaat--gtgagtaaaaatACAT--CTTGtatgctttgaaatttattatgGATAATCTAACAATTATGAACCCTTAATATTTTCATGTTGTATTAT----TTATTGTGCTCAGTTTTATCATTGAGAGCTAGCATGTACTTTGCGTCTAAACATTAATTGTCATTACCTTACTTGATTTGTATT---CTTCAAACCCAAAATTATGTGTAAATA---ATGTGCATGCATAcagataagagag---agagagggagagacaaagacaaaagagATATGC-TTATCTGGGATGATAGTTTTGGCAATTTATTGAATAGCAGAGGATTGTTGTATAATTTTATTGGCCTCATCAATGGATAATTATTTCTCATCAAGGCCACTCTGTTGGTAATCCTATAGATTAACTCTCTGCTTCCCTTGCTCtataaattctattaatttt---tgtaaTCCCACATTTGAAACAATGCACCCTACAAAAAGGATTTTACTAATACACTTAAAATGCATTATTTGAATGGTAATTTCAATGTCTTCTATAAAAAGTttacaacttttattttattttattttatgaaggcAAATTGATAACCTTTTGGAAGATCTGAAGAAAGTAGAAGCCTGTGGAAAAAATTCATGTGAAGAGATTCTTAGAAAACTTCACTCAATTGAATATGAAAATGAAACTCTGAATCTTGAGAATACAAAACTAAAGGTACTGTGTTtttaagtgtgtatgtgtgtat-tctgTGTTTA---------------GTGTAGTTAGTAAAAGCAGtttaaagaaatagcagaaatcgTAGGTTCTTGTATCGCATTGTCATTTTGTTTCTCAGgatattatattttcattaaaacagGTAATTTCTAAATCTGCCCGTCTAATTTATTTGGATATGTATATGtcaacacatacacatacacatgcatatatatatatatatatagagagagagagagagagagatagatatataatgcacatatgtaaatttttttagttGTATACACAGATAcatgtttaaatttcatttagcAGTACAAAGTAAGCCTTGAAACTTGAATAACTG--TCTTTGTcttaacttt--aaatatttatttaaaatctttaattttagcAGTTAGGTAAGTTATTCAAAATTACATTAACTCTAATGCATAAGACTATTGCTAAGTACCATGGTTACGATAGTGTATAACCTCAGGCCTGGTCTGTTTGAAACCAGAAAGTATGTTCTTGGCTGCTTTATAACCAGAAAGAATTTTCCAACTGAGTCAAATCCAAGGGATGATTGGTTTGTATGTGTACCAGAAAAGAGACAG----ggaaatttttatactttctgagaaaaaaga

a score=15607
s chr3           145139532 784 + 160039680 ATTATCAATTCTTCTTGTTTAGAACACAA---CTTGTTTTCAGCTCTTTTTATTTGTCAG----TAAAA---------AAAAAAATCCTGTCCTGTGTA---CTGA-TTAAATTTA--CATGAGTATTACTC---------------ATT---AATTTTAGATGGGAATTATATGCAATCAAA-TGATTACTCCATTGCTGTTGATGAATGAGTTATGATTTAATGATTCT-TCAGCTAGGACTGCAATGC--TCTGATGGTTAGGAACTCCATCAGGCACGTGTTTCTTTCTAGGGTACACTTGATGCCTTGAAGGATGAAGTTGCTTCTGTTGAAAATGAACTTGTAGAACTGCAAGAAGTAGAAAAACGACAAAAAACCCTCGTCGAAGGATACAGGACTCAGGTGAC--TTGCATCTGTTTTAATGATGGTTAAAATCTGT-----------GGC--------TGACTGAGACTCAGGTCGTCAGAACTGAAGATGTGGGGCAAAT-CTCTGTGGCATAATACAAGTCAAGGATGCC-----------------------------------------------------------------------------------------------AAACATTCCTTAAGACCCCATGTGCCTTCATAAA---GTTGTCTTGCTAATTCCAGATGCTAGCTCTGCTTATGAAAACAATAGAGATATTCTTATTT---TTTTTTAGACATTTTCTTTATATACATTTCAAATTTAGAGTAAA--CTTAAAATGGATTGCATAGGCATAATGAGAATCTTGTTA----GTATGCTTAATGGCATTGATTTAAAATAATGACTACCATCTAGGGTCATTAATCA-CAGTGTTCCTCTTTTCCTAATAAATAATGGAAAATTCAAATTTATTTACATGAAATAAATGGAAAGAAACATATGA
s HiC_scaffold_1 131409519 935 + 233722169 ATTATTGACTCTTTCTCTCCAGGACAGTAGGCTATGTTCTTAGTCCTCTTTGTTCGgtgagttttaaaagtttttttaaaaaatgtaatgtgCTGTGTAAATCTGAATTAAATTTGTTCACAAGTGTTATTCTGTAACTTttcaagcattttaaattttagatgataattgtatgtaataaaaataattgttttgttacttttgttga-tgaattatgtttttataattCTGTAAGACTGGAATGTAATGCATCCTAATGATTTATAAA---ATCTGTTCTCCATTTTTTTGTAGACCACACTTACTGCTTTGCAAGACGAAGTTGTTTCTGTTGAAAATGAACTCTTAGAACTGCAAGAAATAGAAAAACGGCAGAAAGACCTTATTGAAATATATAAAGCTCAGGTGACCACTGTGTGCATATTAATGTTTGTCAAAATTTGTATATTATTTAAGGCATCGTATTTGTTTATGATTCAaataaacagaactgaaaaaggTAGACTATCATTTTGTAATATAATATATCCCAAGCAtacatgtttttgtttgcttttgctttgttaGGGACCAaagccagggccttgtacatgctagggaCGTGTTTTATCACTGACCTACATCCTTAGGCCCTGAAACATATCTTAAGATCCCAAATAGCTTTATAAAAAGGTAATTCTGACAATTCCCAATTGAAAC-CTGCCTGTgtataaattataa--tttcttaACTAGATTTAGTATTAATTATGTGGGTATAATGTGAAATCTTAATGTAAAATCTTAATATTGGTTATAC-------------TTTTTGTCATCCTTTATGCTTAATTGTATTG--TTAGAATAATGACTTTCCGCTTGGGCCTTTAAATACCAGTATATCCCTTTTCCCAATAAAGAAAGTATAGTTCAGATTTAGTCACATGAAAGACCTACAGAGAAA-ACATGA

a score=129933
s chr3           145145395 8978 + 160039680 [encoded data, 10282 characters]
s HiC_scaffold_1 131411832 8910 + 233722169 [encoded data, 10282 characters]

a score=34575
s chr3           145156287 1924 + 160039680 AAGGTAGTGACTTCCTGTGGCAAAGATACA-----CTTATTTATGAATGGTTTCTGCTTATGTCCTGAACTGCATTTTCATCAGAGTAACTTAAGTTCGTAGC-CTTTAAATATTAGTTCGTGCAGTGTTTGAGCCACTGTGGGAGGAAGAGACCCAGCA---TCCATGTGGTTGGTGCT---TTGCCACCAGCGATCTAGGTCCTGGGAATCTCAAAGTCTCTGTGCTTTGTTTCCCTGTG--AAGCACTGAG-TGCCAGCACCCATGAGGCCCCAGAGTCAGCACCC-AGTGTCCCTGAACACTTTTTGTTTC-----CCAGCCTCGCACAA---CAGGGAACTGTCTCCCCCCTATTCTAGCAGATTCGAGGGATTTTCTTTTCATTATCAATATCCAGGGACTCAAA---------TCTTAAGTTATATAAGTTTTCTCCTACTTAAGTTATGTAAGTTATTGTCACTTCTTCC--TGTTCCTCTCGTCCTAGTTTGGTTCTCTGGATCTGATCTCTATGGGACTTGGCTTTTTGTCAACACAGGGTCTTATTAGACGTCTTGTAAGGT----CTTCCATCTGATTTTTTTTTTTTTTTACCACTAATAAAGTTTTGGAAGACAGTAATTCCCCTTTTTGATTGGAATGTTGAAGTTTTAATCTAAAACTTGTG---TTTCTAAGTTCCTGAAAGTACTCTGTTGAGTTATGTAATTCTGTTCTATTTTTGATTCCTTGGGCCCTCCTCTGTCTCTCC--TTGCATCTACTTAAATAGGCTTCTCTTATGTTGGTCT--CTGGCCTTGCTGCCATCCAAGCCTCACAAGTGAGTTTCAGGTTTC----CTGCTTACGGCTGTGTGTGTGTTCAACACTGGCCAGCAGCCTGTGGCGCACATGTGCTGAGCAGAGGCAGACTGAGCGCTGAAAGGTGTGGGGACCTCAGTCCTCATGGGCCTGTGAGCCACGCTGCCATCTGCAGAGT---CAGCGAAGACCTCTTCTTCCCGCAGTCTCTTTTGGTTATAAGCAGCCATTCTTTCTCAACTACAAAGACTGGAAACACTTCACTAGAGAGGCCCCTTCAAATTTTCTCAGGTCAACAGGTCTAGTAAGGCACACAGCAAGTGAAATCTTCCTTCTTCAGAAGTGAGC-------ATGGGC--CAGTCAT------------GACTTAAAGAC----TCTAATCTATCTGCTGACTTAGGatttattctttttttaattaaaaaaaattCCCTCAAATTTGTGTTCGTAATGAACAGAAAATATTTTTGCTTGCATATGTAATTTGACAGATGTTTGGAGATTCAGGGATGTGGACAAGCCTGCATGTCTTGAT-AGGCTGAGGAAA----------------CTACTTG-ACTTCCTGTTTGTTTTGTTTATTCT----AAATTTAGCAGTTTT----ATAAGTTTTAATGATAATTTTCTACTCAGATAAA--TAAAAATCTCGAAGACTCCT----TAGGTGGAAGGAAATCGGGGTGTTGGGGAGGGGGTTGTTGGTGAGAGGCCCTGATCTAAGAAGGAACTGCTGTGATGTGATTTTCAGAGCTGTAGTAAATTTAGACAA--GAGGGAAAGAGTCAGCTTCCTCA-GATCAAGATGGCGGCCA-CCAGAGTGAGGGCATAGAGAGATGGCGAAGCCTGGGGTGGTGAAGCTGGCT------------------TGGTGTGGCAGAAGAGTGCAAGTGCCCGTGTTGATGGACTGTGAGAAGAAG--CAGGTAAC--TGATAAGGAATGGAGTTGTGAAAGTTCC-TCTGAGTTTCTGG-------------------------CCTCGGCATGATCCTTGAGGGCTGCATGGTCTGCTGCTGCCCAGCACCCTCTTCCT----CACACGGCAGAAGCAGCTTGTTTT-----------CCTTGAGAGCCAAGCTTCCTCCTTCCTTCCCACTCTCATCTCCAAAAGCTTCTTCCCCTACTCCTGCCCTGCTGAAATTCTGT---TCCTCTCAGGTACTTTCCTG-----TTCTTTCATGACTGACAGTTGTTGATTTGTGTGGCCATTT
s HiC_scaffold_1 131421884 1978 + 233722169 aaGGTGATGCTTTCTTTTAACAGTAAtttatttgtctcatttattattgcttttttatagt-tcttaggttttatttttgttaatgtaATTCGTGTctgtggcattttaaaaattggtacctGCAATGTT------------GGAGATAAGTTTCCTACAAAGTCCTTAAGGTTGGTACTGAGTTGACAGTAACAAAC-ATGACACAGAAGTTCAGCAACTTCTGTGCTTAATGTCCCTGTGGGAAGCATTAAGGCTTCAGTACCTGCAGGGCCCCAGAGTGGGTGCCCTGGTCTCCCTGAACACTAGGTGTTTCTGCTCCCAGCTTTCCACTGTCTCGGGAAGCTCGTTTCCCATAGTTCCAATAGGTT-GCTGCATTTTCTCTTGGTGCTGGATAGTCAGATTGTAAAAGATGCTGGATGTCAAGTTGTAAAAGATTTCTTTCA------TTATCTATGTTACTTTTGCACCTTCCCatgttcctttcttctt----------cctagtTCTGGTCTCCATGTGACATAGCCTTTT--TAACAGGCCATCTGTCACTGTTTCTTGTGAAGTATTTCTTCACTCTGATTTTTCTG-------ACCACTTGTGTGGTTTTTAAGGCCAgtcattttcttgtt--gctggaatgttgaatttttaattaaaaactcatGATTTTTTTAAGTTCCTGAAG----TCTTTT-AGTTCTGTAATTccattatattttca----ttaaaattctcttctgtcttttccattggttctacTTCAGTAAGCATCTCTTATTTCTGTTCTGCTGGTCATCTTTTCTTCCAAGTTCCATGAATGCACTTCAGCTTTCTTGCCTGCTCATAGCTGTG-GTTCCCTCAGCACCTGCCAACAGCCTGTTCTGCACATCTGCTGAGCAGTAGCAAGCTCAGTGGTAAAAGTTATGATGA-CTGTGTTCTCAGGGGCATAAGAGACCTGTTACA--CTGCTGAGTTTCTAGTGAGGAGCTGTTTTGTCCTCTGACTTACTCAGTCACAAGCAGCAGTTCTTTCCCTAATATCAACACTGAAAGCACTTCAATGGGCAGCGCCCCTCAAGTGTTC-CAGGT-AGCAGATCAGGTGCAACAAACAGCAGTTGAAGTCCTCCTT----GGAGATGAGCTGCAAGTGTGATCTGCAGTTGTAAAATGTGcagcaatttaaagaaggagtTTGATCTGTCTGCTGGCTTGTTATTCATGGTTTTTATTCTTAGAAACACCTCTC-------TGTGTATATAA------------------GCCCACATATG----TTGATATGTGCATGAAA----GAAGGTATAGACA--CCTACATGCCTTCATGAGAGTGGGGAAAAGAGTAATAATTTCTCCtatgtgtgcttttattttattttacttattctgATGAAATTTAACTACTTTTGCAGCAATTTTTG---------TTCTAATCCCATAAACTTTAAAGGTCAGAAGAAGGGTATGATATGTGTTAGAGAATGGGA-----Gagaagtggg--attggtgagaagttaTAGTCCAAGAATGAAATACTGGAATTTGATTTTCAGAGGTGCAG--GAGCTGGACAATGAAGGGAAA-------CTTACTCGCAATGGAAGTGAAGCTCAGTGAAAGCCAGGATATAGAGTAATTAAGAAGCTTTGGATGGCAAAGCTCTCTAGAATGTGTTAGGAAATAGggtgaagcagaaga--aaaag----catTTTGTTAAA-TGTGAGCGGATGGATAGATGACTTTGATAAGGAATGAACTT-TGAAAGTTCTATCCAATGTTCTGACTATTCTTAGAATAAAGCCCAAAGTCCTCACCATGGCCCTCAAGGCCTGCATGATCATGGCCAGCCCACCACCCCCTTTCTGTGGGACTCCCCAGCACTATTCCTCCTTACTCGCGAGTACCTTGAGAAGCAaactgcttccttccttcctggtctCCTTTTAGGATATTTTTTGTCTCACTCTTGACCTGACTAAATCCTGCTTGTTCTCCCATACATCTTCCTATGCTTTTCCTTCATAATTGGCAATAACT--TTTCTGTGGTTGTTT

a score=23378
s chr3           145163667 1048 + 160039680 gTGATGGTGGATTTCTGGGCCTGAGGACTGCAATAAAATAAATCTCAGCCAACACTAAGTGCCTTGT---------TATGTTACGGCATCTCTAACAAATCCACACATCTAGTTAGCATATCTGGAGCTACATTATTGCCTTC--ATTAAACACTTTATCGTTGGCTAACTGTATACAAATGGTGCGTT-CTTTGGGGCTTTGGTCTGAATGTCTAACAAGTTGTCTTCCCTTCAGCTTTGACAGGGCACATGTAATTCTGCCCTATTCGTTTCAACTTTCCAGGCTAAGACTTTAGCCAATTTCTTCAGACA--GTCTTGATTTCGGCACACATC-----------------TTGTATGTTCAAGACCGTGAGCTGTTCATCTTCAGTCTTTCCTGTATTTCAGTCCAGTCACTAAAGCCTCTGCCGGGTTCTGGTACCTTTGCC--CTCCAGAGGTAG-CTTGTGTCATGGGCCATGCCTGGTTTCG-----------------CAGAATTG---------------AAAGCAGTACCCTCGGAAAGTGGCAACTCCCTCCAAAGCCTCCAGCCCTTGCCTCCCATTTTTTGGAGggctcctactctcggtaggtctttgtctttcatcgcggtggctgtgtgagtctgtatgaaattatgctttgcttttctgtggttttctgcttagctctttagtctcctactctgcatagcttcagaacctgacaaatatgttgaagtataaaccagccatgcacttgattggtctctgcctcca--------actccagccatgtgagatctccaaagcttttgccagggtgccgagccccagctgtggctccatgcctggccaagctgacatttttagtctgtgacctttctgggaaaatgcagctgagaatccttagcttacctctgaaaatgaggtcctttagttagcctcgcttccatggctctc-cattgctctttgaaagggtttgtatacttgacttgggctttcttgttcttatagAGTGGCCACCTATCCAGGTTTGCTTAATAGTAAGACACATCTTGGAGTG-AGGGCTTTCAATGTCAATAGTGGGA-GGCTTTGGGGAAACCAGGGTGGTTGGTG
s HiC_scaffold_1 131428327 1012 + 233722169 GTGATTGTGGACTTTTGGCCTCCTCAACTGGAA--AAATACTCTTTTGTTTAAACCA----CCTTGTCTCTGTTACTTTGTTACAACAGCTCTAACAAACTTATACCTCCAGTTAGCTAATTTGAAACTGAATTATTATCTTCATATCGCATAGGTCATCTTTATC-ACCAATATTCCAATGTCATGTTCCTTTTGGGTTTAGAGTTGAAAGCCTGATGAGTTCTTTCCTCTTTAGCACTGACGGACCACAGG---GTCTGTTCTACTCCTCGCAGGTTTTCAGGTTAAGATTTTAGCTAGTTGCCCCTGACAATGTGCAGAATTCAGGAAATGGCcataatgagaaaataaactctGTGTTTGAGACCTTA----------CTctgattttttcttcatttcctttcaaGCATCAAA-CCTGTGCCAGTTTCTCCAACCCATCCCTGCCCCAGGAGTTGCCTTCTGCCAACGGCCATGCCTGGATTCTCAACTTGTAGTTATGTCCAGAATTGGCTATGACTCTCTCAGAAAAAGTGGCTTCGGATAACCATCACTCTTTCCTGAGCTGTCAGCTCTTGCCTCCAGTGTCC--AACGACTTCTTTCTGTGGTAGATCTTTGACTTTCATCACTGTACC-----GAATCTGCATGAAATTGTGC-TTgtttttgagaagttttctgcttaGATCTTTAGTCTACCACCCTGCAT--------AATTTGACAAATATGTTGAAGGATAAACCA-CCATGCATTTGGTTTTCCTCTGCCTCCAAATTTGTCACTCCAGCCATATGAGGTCTCCAAAACCTCTGCCAACACACTG--------------------------------------------------------------AAGTGCTGCAAAAAATCCTCAGCTCACCTCAGAATTTG-GTTCTTTTCATCTTTGTTGCTTCTATagctctcttctttcttttataaaagatttttgtgttttatttgcacTC-----TTGTTATAGAGTGACCAACCATCCAAGTTTACTT-----CAGGGATTTTTTTGGACTGTATGACTTT--GTGCTTAAGCTGGGACAGTCCTAGGGAATTCAGCATGAttggtg

a score=35316
s chr3           145168514 6565 + 160039680 [encoded data, 7328 characters]
s HiC_scaffold_1 131441735 6126 + 233722169 [encoded data, 7328 characters]

a score=21583
s chr3           145175466 902 + 160039680 ACTGAAGAAGGCAACCAACGTCATTT-TCATAATACCTCCCATTATGTCTCTGGCAGAACAGTGGTATCCTAAGTTGGCCTTATCAAGGCTGGACTGGGCTCATTCACTCCTCTGCCCCAAGCTCAGGATA----------CAAGGCCTG----------TCGCTGACTATAATCACAA-TTGCCTATTTTTAATATAGTCT-----------CACATATTCCATAGTGTACAATATATTTCCATAGTTCATATTAGCTGGCGAG---CATTACTAGTAGAAATTTCACTTGTAAAAATATAGTGGATAGAGGAACAAAAATAGATTTATGAATTGTGCTTGATTTTTTTCTTGTATT--GGGCATAGCTAAGATAAACATGGTGCCACATGTCTACCATGCACAGTGACTTAACTCACATATTTAGTCAGTATAAAAACATTAATAATGCTATTCCAAGCCACAGAGAC-ACCAGCATGAAATTAAGCTCCTTCCCGTCATCACCTTTTAATGTTAAGAAACTGGAATTAATTTCAAAGAGAACATGTCTGGCCGAGGTATTTTAATGGTGGGGAAATTAACAAAATATTCTATGGAAGGATCAGTTTTATATCAAACTAAT-GCCCCAAGCAGAACC-TAGTTGGACTTTTCACCACCTCTCAAATGGAAAATATTTCTTCCAAAATGTTTTAATTTAAAAAGTTCTTGGGATATGTGTGTATAGAAAACATTTTCTTTTAATTGTAGAGAGAGAAGGGCTGACCTTTTGACCCGAGATTGTCGTAGTGTTTGAAATTGCGTAGCTACGGTTAGAGTGGTTAGAA----ATTTAGGGGCCCTGATCGA---AAGTGATTCAAGCAGCAAAGCCATACCTCTCAGATCTTCCCTATCCAAAA-------TGAGCTACAGGGCTAACTCCAAAACTTTCTTAAGTTGAACGGGATAA
s HiC_scaffold_1 131456160 908 + 233722169 ATTAAGTAGGACAACCCTCTTTATCTGCCATGATTGTTTACATCGTGACTCTGGTAAAAGAATGGTGCCTTGGGTTGGTGAGAT--GGGCTAAATACTACTGAGTCACTCCTCTGTGTCCAGCATATGACAGCGTCTCTCACAAAGCATGATTGTAATGTTTGCATAATTTAATTACAAGTCGCCCATTT---ATATGTTCTGCTCATTCAACTATGCATTTAATGACTTACATTCTCTTACCATAGTTCATATTAGCTGGAGATGTTCTTTAATAGTGACAAATCCATTTACAAAA-TGTAGTTGttggag----aaaaatg--tttatgaattctatttggtgtttttttcatattctattcATAGCTAATATAAGCATAGTACTGTATGTCCAGTATGCTGGACG--TTAAGTCACTTACT----------------AGTAATAATGTTTATCTTC-CTACAGAAACTACCAAAGGGAAATTACATTCCTTCTCGTCTTCACCTTTCAGTTTTTACAAACTGGAATTGATTTCAAAGGGAACAGGCCTGGCTGAGGTATATTAAGAGTGGGCAAACT----GCAGAGTCTATGGAAAGATTAATTTGGTTTAAAAGTAGTAATTCTGAACAGAATCAAAGTTACACTTCTTACCATCTCCAAACCGGAAAATATTTCCTCCAAAATGTTTTAATAGAAATGATTTTTGGATTAAGTATATACGCATCAAAATATATcttaattacaaagataaaatattaga-GTTTGGACCTGAGGTTTAC-CAGTGT---AAATTGTGTTATTATAGATTGAATGATGAAAAGGACAGCTAGATGATCTgatcaactgaaaaaattcaagCAGAAAAGA---ACATC------CTTGACTGTCCAAAAAATGGTGTTACTTGGAGGGCTTGCTCCAAAAATTCTTTCAACATCATAGGATAA

a score=27804
s chr3           145177538 853 + 160039680 AAGAGTCTAATTCACTGAAGAACCAATTCCCTTAATTTACTAGGCACACTCCACTGT-----TTAGG--------TTCACTTGGACTCTGTAATGATAGTGCTTGAAGGAC----TGGTGGCTTTGTCTCTGGTCAGACTCCTTGCTGCCTGTTCTGCATGCAGCAGAGAGGAACTCAGTGGAGAGAG------------CAGTCGGGTACCTAGTTCAGCTCCTGCAGGAGGAAAAGAGACGAGGGAGAGGGGAAGACATGGGTCAGAGCATCTGGGGAGCAGAGGAAAGGAGACACAGGGAGGCCTTTAGCTTCAGAAAAACATCTATTTGTGGGATGTCATTAGATTTAAGAATATGTTCTTTGTGGGTATAGGTCTCATGTATGTTATCTGTTTCCACCAGTCATGGCTTCTATCTCTCTGGAATCAGCAACCTATGCTGGCCCTCCTCTTCATCCTGACTCCATGAGATCTCCCCTCCGTCATCTCTGTCCTTCCAC-CTATGGCAGCCCAAAGCTGGGCAGAAACAAG------ATTCCTTAAATTGCTGCTATGAAAAC-----------TGGTCAATTAAACGTTTACATAAATCTTTAAAAGCTATTAAAACTATCC-ATCCAATGTGAAGTGTTGTAAACTTTATAAATAGTTCAAAGGAACAAGAAAAATGTGCCAATTTGGTCTTGTGGAAAATTGGATTCCCTTAGTTGATTTTTGGCTAATTGACCTTGAGCTAGACTCGAAGGATTAATACACATTTCCTTAGCAGAGATGGGAAGGACTCTCATTCTGGGTTGGAAGACTCAAATTGGAGAAGTAAAC----AAAAAATAAACATTTTTATTTCTTTATCAAAGGTACCAGAGCACAAATGCAG----AGTATCATAAGCAGT
s HiC_scaffold_1 131459076 867 + 233722169 AAGAGTCCAATTCACCTATTAAGCACTCCTCTGgatttacttgtttcttttcactgtaGTTTTGAAGGACGGGCTTTCACT-GGGCTCCATAAT---AGCACTTGAAAGAAAGAGTGTTGGGTTTGTCTCTGGCCCAACTCCTTGCTGCTTGTGCTGGAAGGAACAGAGATACGTGATGTGGGGAGAGGCACCAAAAAGTCAGCAGAG-----AGCTCAGCTTTTACAAGAGGCAAAGGGACTGGGG---GAGGGAGAGATGGGGCAGAATGTTTGGGGATcagaagaagaaggaaatggGACAG--TTTATTTCTAAGA------CTAT------GAAGTGATCATATTTGGCAATATATTCTTTGCAAATATGTGTTCCCTGAATGCATCCTCTTTCTCTGACCCACAACTTCCCTGCCTCTGGAATCAGCAACAT---------CTTCCCTT--TTCTAACCCCAGGAGGTCTCCTCGGTTTC-TCTCAGCCCTTTCGGGCTGCAGAGGCAGAAAGCGGGGAAGAGACAAACTAAACATTCCTTAAAATGCtgttatgaaaacaaaatgaaaactggtCAATGAAAagtttacataaatttttaaaagctattaaaaCTATCCCATCCAATGTGAATTTCTATAAACTTTATAAATAGTTCAAAAGAACAAGAAAG-TTTGGCAAATCAGTCTTTTGGAAAATTGGCTCTCTGTAGTTGATTTTTGGTAAATTGGCCCAGAACTGGTTTTGAAGAATTAATATGTATTCACCTAGCAAAAATGGGAAAG---TAGATGTTAGATATAAAGCCTAAAATTAGAAAGATAACTCTGGCAGCAATAGGCATATTTATTTCTTCACCAAATGTATTAAAGTACAGAAACTGTCCTTGTAAAATGAGCAGT

a score=48057
s chr3           145193175 2045 + 160039680 tctggccattttcttctc-aagcaaaggatgttaagtggatgtgttgcccaaacagctgc---ctgggaggatctctcttcaagattgttttgctgggatgtccctgaagggactgtaatgctgcagctgtccactcttgggtggtttgagcatatcagatataac-acctgtgagggagaacaggctcttctcttcccctgtctgtgaatcataaagagcttctcctg-----------------------------agCGGTG----AGAAGAT------------------------GCATGGAATTCTTTTAGTA------AAAGTTTTCTATTGTGTTCTCACT--------------TTTATAGTCATAGCCATACCTAATA-----TTCTTGG---------------------------------------TTACTTACATATTTAGACACACTGGGCCCTCTGTGTGGAAAAGCATA-AAAGTAGGATTTTTCT------TCTACTT------TGTCATCAGCTTTAGAGTTGACTTAGGTTT----TGTGAAGTATTAATAATGGTGTTATTGAAGATGTCATTTTAAATAACAGTGTTTTATTCCAG---CTCCATG-GCTCTTCCTA---TGTTTTCCTTCCAGGTTCTTTCTCATTCTCTTA----ATTTTTAAATGTTATAGTCTCTGCCATCTTAGCTTATAAAAACAGGTATAAAATAAACAGTTTTGTGTCTCTCTGATGTCCAAATT----CTTCCAGTTTT-----CATACAAAC-TGCATTTGCCCCATGTGCTAAGTCTCTTAGTGATGAGCTTATGAGATCACGTTGTAGCTATTCAGTCACATACCTGCATTCATGGAAACTGAACACAAACATCAGGAAAGTATAACCTCAAAAAAA---------GCCCAAG---AACTATTCAAAAAGTAAGACATACTAAAGCATTTTTCTGGCAGTAATCCTTTTCATTTGGCCTTTCCTCTTCTCTTTCCAACTTTAAAAAAAAAATAGATCAAGAAATCAGAAAGCAACTATCT-------TCAAATCCACGTTGAATCCACATATGGTCTGAAAATATTTGATTGCCAGCCATGTGTAAGAAAATGCAGATGCTTAGCCCCTTTTT--GTTGACAGCATCACCATTATTAACTCTGTTTGATGATA--------------------------------ACACAGC---------ACACAGTACTCTGGGATTGATACCT-TCTCCTCTTTCAGAGCTCAAG-GTTCCAGAGATAGCTCATGACCCATTGGCCCCCAGTAACCATTAGGAGG------ACCTCATTGC--TCCCTGTTAAATCTGGTTCTATGTCTCACCTCCAGGTCTGTGAACTAATGGTCTGTAAACATTGAGTGAGTACAAGGAACTGGTCTTAATTAGCGCTGATGTCCGTGCTCTTAATTAGTTCTGATGTCCAGATGATTAGAACACTTCTGAAGGAAGTCATG-----ACTTTATCTGTCCCCCTCCCAAATAGATAACTTCAACTTCCTTGGTTCTCAAAAATGCAGATAATACCCCTTTTCT--TAGTTTCACAGATTCTATTCTATTTGGACACAAGAGCT-AATGAGCAACTCAAGAAAAAGTAGCTTGTAAGTGGTAACTAAGACAAGTGGCATTATTTAATGTTCTATGGGGGCAGATAGA----AGGAGAGACCAAATAAACTGCTTATTGTGAGTGTATCGCCATTAG-ACACAGTGGAAGAAAACACAAGGAAGGATTCTAAAACTGGGCTTAGCATTTATTCAGCCCCATCCTGTGAGGTACAACTGTCCAAGTCTCCATCAATTAT---GCACTGCTGGCAAGCATGGTTTGACATTTGACCCATACACCTGGCTTGGAAAGAATATCAGTGTCAGGCGTGTTCTTGGGCTTGCTTTCTTGAATGACATTTTATCAACACATTGACACCAGCTGTGGCTGCAGAAAAACATTCAAAGCAG-CATATTTAAGTGCTTTAAGACATACTGAATAGGGATTTTATTGAGTCTAATAAAATTATTACCAAATGGGACATTTGAGAGCAAGGCAAACTTTTGAACACATTTTAAAGTGCAATGGTGTTGAAAAACTTATGTATACATTTTTGAATTTT---------TGTGACTTTCTAT-GCTTTGTTTTAATCAATACATCTCTGAAACTTTGACTCTGGCTTTCAAAACTGGCTAGA--AGTATTATTTGTATGAGCCTGATAATTGGATGAAAttttgtttt
s HiC_scaffold_1 131467505 2183 + 233722169 ttttgTCATTTCCTTCTCTAAACAAAGCCTGC-AACCAGATTCATCACCCTAAGTTCTGCTCACTGGGAGGACTTCTCTTCACTGCTGTATTTCAGGAGTGTCACTGAAAGGG-------GCTGCAGCTGTCCAGTTTTGAATGGTGTCTGCATGTTGTGCAGAGCCATCTGCAAATCAGGCAAA----------TCCTCTGTCAGCTGATCCTAGAGAGCTTCCCAGGGGGCCATAGGTGTAGGCTAGATAAGAGTCAGCAGTGTCACATAAGGtctgttaacttttattttactgtctGCATATGACTCtatcaatattaaaaaaattttgcaattttgttcttattattacttttataattttatattctcaGTTAttcatatttgtcatttcttgGATCCAAGGATTGATCCTGGGTCTTATGCTTGTTAGGCAATTATTCACATCTTTAGGAACAAATTTTCCCTTATATGAGCAATGATATAAATTAGAACTTTTCTCTATTCTCtacctcatgcctataatctaccttaaaa---atttatatttgtgaTGCAAAGTTTTAATA-CAATGTTAtttaatgta-catttaaaatgatattcCTTTACCCCAAATATTCTATATGCTCGACTCAGTGTATTATCTTCTCActgtttttcccatttcttttccatattttctaGTGGTATAACTTCTGCCTTGTTAG------------GGCATACAGta----tttatgtttgtatatgttgctcaaagtatatttttaagtgtTACTTATATACAAATATGCATTTATATCATGTATTAAGTCATTTATGGATGAACTTATGAGAATAATTTGTAGATGTTCAGCTATATATCTGCAATAAGTAAAATTAAGCAAAGGCATCAGGAAATTATAAACTCAATAAAACAAAGTTGAACTCAAAGCCAATGATTTGAAAAGAAAGatggacaaaaatatttttctggcaATAATCCTTTTCATTTGgcctttcttgttctctttccaacat----gaaaaaatcaaccaagaaatcaaaaagCAGATATATGGTGTCATCAAATCCATGTTAAATCCACATATGGTTTAGAAATATTTGAGATCTAGCCATATATAACCAAAAGCAGatgcttaacttcttctttagtTGACTGTACCAGTATTATTAACTCTGTTAGATGATATTAAACGTACTCTCAGTTATGTCCATGAACATATACCACTGTAAATTAACATAGTACCCCAAAACTGACATCTATTTCTCCTTTCAGATCTCAAGAACTCAAGAGTCAACCCATGGTCAACTGG-TTGTGTTACACATCAAGAGTGCAGCCACCTTATTCTTATTCCTGGGAACCTCTGTAAATAGTCTCACCTACAAAGGTGTGAGCCCCAGGCCTTTAAATATTGGATGAATGCTAGT-GTTAGTCTTAATTTCTGTTGATA-------CTTTAA--------------CAGGTG----GAGTATTTCAAAAAGAAGTCATAGAGTTAGTgtaatttctctatttttgcaAAGGTGACCTCACCTTTCTTAGCTTTCAAAATGTGAGAAATTACAGCTTCTCTGCTAGCTGAATGAATTCCAAATCATttgaatatgaaaattaaatgagcaaTTAAAACAATAGGG----------------------AGGTGGCACTATTTAATTTTGAGTAGTAGCAAGCAGAGCAGATGAGAATCTACA-AAACCACT---------TGTATTGGCAATAGAAAACAGTGAGAGAGAACCTGTGATATGACTGTAAAAACCATACTTGTCTTTATTCAGCTCCATACTGTGAAGTG-------CTAAATGTCCGTTAATTATACAGCACAGTTGCCAA-TATATCTTGATATTTGATCTA-ACACCTCACCTAGAGAGAATGTCAATGTTGACTATATTCTTGGACTTGGTTTCTTGAATA-------------ACATTAACACCAGCTGTGTCTGC--AAAGATGTTCAAAACAGCCATACTTAAATGCTTTAAAGCCTAGTAAACAGGAATTCGGGGGAGCCTAACAAAACTTTTACCAAATGAAACATTTGATAAT-GGACAAGCTTTTCAGCAAATTTTCAAATAGAATGGTGACTAAAAGCttgtgaatagatttttttttcttttttggtcctaTGAATTTTGATAGCTTGACTTTAATCAGTATCTCTTTGAAACTTTGACTCTGATTTTCAAAAATAGCTAGATTATTGTTGCTCAAACAGGCCTACCATTTGGGTGAAACTTTTCTTT

a score=31932
s chr3           145198362 2741 + 160039680 GTGCTCTGCAGACCCTCTTGTGGAAGAAGTCAGGGCCTGGGGATTTCTGGCAAGGTCAACATCTTC----ACATGTATTAAAAATTCACATTTCAGGTCTGTTT---CTTATAGGGTAGCTTATTTATATGATACAA----------------------------------------------TACTTTG--------------------------ATCCTTTTATTAATTCAACTAACTACAATCTTTAGTCAAGTTAACGTCTCTGGAACTTTGGTTTCTATCTTG-AAAGTGGTGATATATT--------TTTGCT-TAAGAACTTCGTTATACTGAACATCTGACAGTATCCGGAG---AATGTGAAGTCCATGTTTTCTCCTCACCCCGCAGGGACATTTGATTGATCAGTAGCAGGAAGTCTGTTTATAGACAAAGAGAGTCTTCAGATGTCTTGGTAACCAACTAGCTTATCATAGAATTG---TTTTGGTATGATACCATCACCATAATGACCAT--AAGACATCTGCT-GTTTTAATAAGGACACTACT----GCAAACACT--GTATTTCATAAA-------------------------------------------------------------------------------------------------------ATGGCCCCTTGTGCAGTTTTCTGCTCTCCTTTGAACTGGATTCACTTTCACTGGTCCCTGACCTAAGAACATCCCATAATTCCTTCAGACTTCAGA------------------------GCAGTCAAAGAGGGAGAATGCCAACCGCTTTTTCTTAGCTCTTCTTACATATTAGTTCATAGTTTGCACAATGCTCTTTC---------------------------------------------------------------------AATCAC-------------------------TTATG------------------------------------------------------------------------------------------------------------TTCTAATGTAAAAT------AGAATCATTTTCTCCTCAC----TACAGTTCTTAAAAGCCATTTTCCAGGAGTTATTTTGCCAAGCAGCATTATTTAA-----GATAGTTAATAATAAAATAACAAA---CTAACATTTGGGTAGGACTCTGAATCTGTACACACGAAATAAAAAAGGGC----------------AAGCTCTTCAGTAAAAT-GGACTTTCTC----------GTAGACACTATGTTT-------TGGATATTAAATTCACTGTCGCTGAGCTAAACTGTTGCTTGCTTCTTTTGTTTTGCTTTTGCTTTGTTTTAGGGCAATCATTAGGATTTTAAATAAAAGTTACCattttaaatttaaaaaaaaaaaCATCACTTTTAA-GGACTCACCCTGAAGGAGCAAACACAAACTAAGGCAAATAGCACTAGGCCAAATTAAAAGCATGCGGGAATACCGAGTTACATGGAATTCC--CTTAACTGAGTGACTTAAACAAAAATCATTAGCTTCTCTTTTTCTTTCCAAATTAAACAACCTCTGCATATAAATCACACTATATAAC---GTGTGATTTCAAAGTA----TAAACAGAATTTTGATTTGCTTACACTCATAGCTACCCTCAGTGTTGGG--------GATACACTTTCATTTGGAGGTTGAAAACTGAGACCT----GGTGGAAGGGATAAGTATTGGAATCAGGGTCCTGACAGCAAATGATGCCTGATCTTCCACTGAGAAAATAAATGCAAAGGTA-CATGCGTTACTGTCTAAGTTAAAGGTCACCCTTGCTG---CATGCTGTGCCACTAAAGG-GAAGCAGCAGCCACAGG-GCCTACTTTGGACAGTAAGCCAACACAATGTGGCAACTTAGTGCCAGTAAAGGACAA-----GGCAAGCCGTTGACTGAC-CCAGGACTCTGCAGGCCTGCGGGTGTTGTTTTAAATGCACAGGCAATGCCAAAAAC---GAGTTGAGTTTCTATGAGA----------------------------------------------------------------------------------------------------------------------------TGCTTA--TGCCCACACAGCTGTCTGGCTCT--------------------------------------------TCTTTCTTTCACTTCAAAGAAC-----TTTTTAATGCAAAATATGTCTGAAGTTCATATTCACCTCAGTGCCCGGAGGAAGGCAAGCCATAAAGCCTATTCTATAGATGACATGAGCCCAGTGCCAGGCACAATGAGGTGCTCTGAAATGGGATCAATTCAACTATGGAAGAACATAGTCACTGTAGCAGTGGAGTGGGCCTTTAGATCCAGGGCAAGAGGGAGATTTTCTGTTAGATACTAGAATTGGTTTTGGCAACTGACTTCTC-AGAGTAGAGATGAAAtccgtctgtctgtctgtctgtctgGGCTTTACAGACAGGCTTA-CAGGGATGCCAGCCAGTTACCTCTCCACACTTCAGTCTCTTCAGCATTCATGAAG------ACCCGTGTGGTCCTCTCTGAC--TCCCGCTACATCAGCTCCCCACGACTCACGGTTTCCTCTCTGTCATCACTCAGTCCAGCCTT-TCTCCCACATTCACTGCCATTGTCTGAGTCCAAGGGGCCAGGTCCTTCCCTTCCTCTATCCCCT---------------------TCTCCCTCCAACCC-AGGCTCTATCTTGTTTCCCATGGCTGTGTCAGACACTCCCTTCCTGTCTCTCTGGAACATCCATCTCCTCTCCCTCCTGACCTTTCAGGGCTCTCTGGTCCGTTCT---TACATTCTCTACTCTTTCCTCAAAACTGTCACCATTCCCACGGCTTCAACTCCCACATGG--------AAATTTACTCCCTCCCACCTCAGAGAGGACTCAAAATGTAAACCCAAGTTCTCTGTTGGCATCCCCACTTGACACGTCAGTGGC--ACCTCAGGCTCTCCTGTACAAGTGA-AAGCCATCATCCCACCACAGCCTGCTCCTTTGCCAGCAGTTGCTTAATCCAGAATCTTATAACTTTTCCAGAGTGCCCCATAGTG--TTGTGAATAACT-------GAAAACAATTACTGTGTATTATAATCATCCCTTTTCCCCCTTTCTGTCTTCCTCATGAAGCC--TTATCACATTGCCCATAAGCCAAGCACATGA--TGTTACAGGAGACATCATGGAATCCAGAAGTGTT-----------GTACTGTATAATGCTCAAAAAAGTTGGGCTATATTTAGTCTGAATTAAAAAACTAAAGTCACTTGTTTAAAATatgaagtc
s HiC_scaffold_1 131475388 3385 + 233722169 GTGCTCTACTG-------CGTGAAGCAACGTAGGGTCAGGAGGCGTGTGCTAAGCTCATTGTCTTCCTGGATGTTTAACAAAGATTCACATTTCAAGTCTGTCTTCTCTTAGAGGGTAACTTCTgtatatgataaaaataattatcaaattaaataaaagttttctctCAGGAATCCTTGTGGTATTTTGTAAGGAGTCAGACTGTTCTTATAAAGATCTTTGAAACAATGTAGACATCTG---TCCTAGGTCAAGTTA--GTGTCTGAAACTTTCGCTGGTCTTCTGTAACATGGAGCTACTTCATCACAAGGTTGCTATGGGGATTAGATGAAATTGTACATC-AACAGTACCAGAAATACAGTGTGAATTCACTGTATCT--CTTAGTTCTCAGAAAAATTTGA-----CAGTAGAAA-----CTGTTTCTGGAAACAGAGGGTCTTCAGAAATCTTG-CAGCCAGAGGGCACATCACAGAATGGCAGTATAGATTGAATGCCATCACCCCAACATTTATCCAAGGTATCCGGTAGCTTTAAGAGGCAAACAAATAATGGCAAGGATTACGTATTTCAGAAGCCTGCACCACTGAGCCAATGGAAAACTGCTATTGTTGGTCAAATTATCTTGCTTATGAGAGTTCTGACTTCCATCATGAAGATTAAAATTTGAGAGTTCACAGATGTGCCCTCATgcacttctcctttttcttttgagcaaGATTCTCTTTCACCAGCTCCCAAGTCCAGCGCATTAGATAATTGTTCCAGAACTTGGACatgcttgaattattttatgaaaatcatTTTGAGAGTTGAAATATCAACTGTTCTTTCTTGAATTTCCATGTAACTTGGTGTCTAATTTGTCCACTACTTTTCTTCTCGATTAGTGCCTTGGtagaggattttattttttgtctttttcatttttatcagtaccagagatcgaaatcacgaccgcacacttgcaaggcaggagcttatgccgctgagctaaattcgcagccccttgttttgttttgttttgttttcatttttatcagtaccagggatcgaacccatgactgtagcatatttttttaaatgaaaagttttttAATGTCCAATTCAAAAAGGATTCCTTTGTTCTCTCAGAATCTCATTCATAAAACTAATtctccaggaatgaatttatcAAATAGCATTATGTAATGCTAGAAATCTAACTTTGAAGCAACAGAAACTTTGCTTTCAAATGA----TTGCATTTATAAATATTAGATTAAAAAAATCTCCCAAACAGTGCTTTCAACCCCTCAGTAAGACAGGACTATTTCCTTTTGGTTTATAATGATTTCGTTTGtgtgtttaaatattaaat-----------aggCTAG--TTTTGAAggatttcagtatttttattttactttgcctTCATGGAAG---TAAGACCTTAAATCAAAGTTACCATc----------agataaaagttttatttttaactaactcacaATGAAAGAACAAGTGCAAATTATGGTGGGTTGCATTAGACTAAATTAAAAGTATGCTGCATTATTGACTCACTTGGAAATTCTTCTAAACTGCATAATTTGCTCAAAA-TCATTAGCTCccttttttt----caaagtaaacaaTCTCTGCCTGTAAATTATACTGAGTAACTGCATGTGATTACAAAGTAAGTATAAATAGAATTTTGGTGTG--TAC-----TAACGAACGCAAGCTTTGGTTAACACACAATACCTTTTCATTTGATAGTTGGAAATTGATACCTACCTGGCAGGAGTTATAAATATTGGAATAAGCATTTTGACAACAAAGCACTTTGAACATTCAAAGTAGTCATGCAATATAACTGGATCCTGCTTCACTCTCCAGATAAACATGCGCTCTTGCTGTTGCTTGTTTAGCTAccaaaaaagaagcagcagcagcaagcagccaCTTTTAGGAAGAAGCCGACATAGTGTGGCACTTTGCGGGTGGCAAGAGGCAATTTCTGTGTAGTTGTTCCCTTGCTCCTGGGAGTCGCAGGCCC-CATCTAATGTATCAAATGCTTGGGCAGGGATAAAAAACAGGAGCTGTGTTTCTgtatgaaaataatttgtatCAGCGTACCTTTCAAGAACAGCATTGTTATAATGGATGTTAGGCCCCTGGTTTCAGCCTAAAATCCTTcagccttttctcctttctctttcccttctctctcattGCCTTCTGCTTTCTTGcttactctgctttctttctttctttctttctttctttctttctttctttctttctttctttcttctctttctttctcttcaaagaaagaaaatttacaat------TGTGTCTGGAATTTTTCTT-ACTACAGTACCCAGAGAGAGACTAGCTAACGAGACCAGTCTATGGAAGGCATGAGTCCAGTGCCCGGCACATGGAGGTATTCAACAATGGTAGCACTTAGGTCGTAAGACAAAAGCCCCGCTGTA-----GAGGAAAGTCTCTATAT-TGGTGCCAAACTAAGATTTTTCAATTCATGTTTGAATTAGTTTTGCTAACTGAATTCTCAAGAGCAGAAGTGAAA--------TCTAAATATTTGCCTGGATTTTATAATCAAGTCTATCAAAAATGGCAGTCACTTGCTT------GCTCCAGTCCCTTTAGTAAAACTAAAACTTCCCACCCATG-----------GACTGTCCTGTTCCATCTGCTGTCCACCGTTCACTGTTCCTGCAGCTTCACTATTTAGCCTGGCTTTGGTTCCCACTTTTACTGCCCTCGGCTGTGTCT-ATTTGTCAAATCCTTATCTTTCATGATATTTTCGTAGCAGTTGACACAGCAAATGCTGCTCCAGCTTGAAACTCTTTCTTGGTTTTCATGACAGCTGTGGTCACTCCTTCTCAGCCTCTTCCCAAGCTTC--CTCCTCCTCGTCTTGACACGTAAAGGCTGTACACTCAGTTATCTCCTCATTCTACACTCTCTCTTAATAATCTCTCCTTTTTCCAAGGCTTCAACTACTCCCTGATATGTTACAAATCTGGTTCTT--TGATAAAGAGAGTATTAAGTTTCTACATCCAAACTTTCAGTGAACATCTGGACTGGATACGTCAGATACATACCTCAAGCTTATATGTTCAAGAAAGAATTCATAATCATTTTCAGACTTGCTCTTTACCACCCTTTTGATTAAGTcaaaattttgtagtttttcc-ttttgtcacatagtattttatgaataaattcattaaaaaatttatgacCTTATATTGTAATTgtcattttttc-----tctgtcttcctcatGAAGACTGTTACCGTATTGCCCAAATATCTAACATATTGCCTCTCATAGGAAAAGTAATTGCA-----AGGTCTTAGCATGTAAGAATACTACATGATGTTCCAAACTAGTGCACTGCCTTCTGTTTAAATCAAGACACTAAAA-CATTCACTTGAATTATAAAGTC

a score=69415
s chr3           145202306 5567 + 160039680 [encoded data, 6050 characters]
s HiC_scaffold_1 131478733 5248 + 233722169 [encoded data, 6050 characters]

a score=71505
s chr3           145209263 3062 + 160039680 AAATTTACAGTGGTTTGTAAATAGTAAGGAACACAGTCCTTTTTAGCTTGTTATATATATTT-TTTTCTTAAACA----------GATAAGCCCTGT--GGAGGTAGATGGAGGACAGACTCACTCTTAGATGCTGTGGAAAA-CTCTTCTGACTTAGATGCCTTAAGACGCAAGTTCCCTC-CTGCTCATGCCCTGTTCCTTACGGCTTCCAGAGCAGCGGTTTCTGTTTATTTTGTC---GTCATGACTTGTGCATTG--GAACAGTGGTCTTTGAAAAATTATGCTTATAAATAATCATCAATAATAACAGTAATTTGGA--TTTGGCTTATAATTTCCCTCTTTCTATTTGCAACATTAAAAC---AAAGAACCTTTTTGAAGAGGAACGTCTCTTTTTCCTTTTGAATCTGTGAGAATCGTGGTCCAAAATTCAATCCAAACCAAATTTCAGATGTGGAATTGTAAGCCCT----CTGAATGGAAACCATGGGGCCCCTCAGCCAG--TGGCAATTGGCAGTTCTACCCTGGTCTCCAAGGACACACACAGTGGGATACCAACCAAGAAAAAGAACCAGGAAGGAAGAGGAAGGAAAATGCTAAAAACATCTGTAGAGAGTTGGGGTTTCTCTGCTACTGGTACAATGGAGTCCTTCTTGTTCCTATAACGACAGCCCCGTGCTGTGCCTATAACTACATATAAAAT----AATAGTGAACC---TCACAAAACTTCAGAGAGCTTGTACTATTTAAGGGCGAGGCCA----------------GAGTCCTT---ACCCAACGCCATCATGGATACACTAATATTTTGCTGCAACTCTCTTG----------GCTCCTCCCCTGAAACTCTGATGTGTCA--AGGACACCTGTAGATAGTAACAGT-CACATTATC------ACAGGTCATGTTGGAAAACAGAGGCTATGCTGCAGCGTATACAATATTTCTTCAGGATCTCACACAAAGA-------GGGCCCAGTTCCTTTAAATGCTCAGGCTGGTAAGCTACCCCAAGGCCCCAAACAAGACTCATTTCCTGGGGCATGCCT---AACCGCTTTCTCTTGTGTGCAATATAGGAAAACCACCTCCCAGTG-TGGATATTAAGATAACTCTTCTCTGGTGGTCTGTCCTCACCACTCCAACCTTTATAC--CCCAGACC---------------------------GTGCCAGGAGGCCAATCTGTCACCATTTCATTTTGGGACATTCTACCTCAGAAGCAATGGTG-TGGGCCGCTGACCTCAAATCTGCAGGGTGTGTGGCCCTTACCACTTGCCAACCTGTGTTCTTGGTCATGAACCACATCCTGTGACCCCGATTCGG--TCCTAATAA-CACTATTACTTTGTTAAAGTAGCTGAGCTTGTAGATTTGGGAACTAACCATCTTGTGAAAGAGAGAAATTGACATAAAGCCTTAGACAAATGAGCGGGATCAGAA----GTCATGATGGGCATTAGATATAAGGAAGAAGATG-GTGGAAGTGAAGGGATTATTAATCAGAGTGGAAGT---CACATCACATTCTACATCTGAACAGGAATACAA-----CCATTTACAACTGTGCCAGCAAAGGCACCTTCCGGTAGCTGTTCCTTCCCATAAGTAACTTCCACTGAAGTTTAAACAGATCTTGATTCACCTCATAG-ATGCTTAGCCAAAGAACGGCCTTTGTAACTGCTGACAGACAGCTGAC---AATCCTTACAGCAGTACTCTCTGGCCAGGGATCTTCTTCTTATTGTCTTATAAAGAGTGTACATTTGGCTAGAAGGTCCCAGAGAGTGTAAGTCTTCAAGAGGC--TAACTTACAACCAGCTCAGGACCAGG------CAGAGGAAGTCTTCCTATTTACTTGTGGATTATTTTCTGCA-TTTCCCCAGCGCTAAACTGTCCCCCCAAAAGACCAGTTTTCTTTGGTGGAAGAGGATATAGTTCTCCTTAAATATATAGAAGGAGCTACAGAAATCCCCCCCGGCACATGCTGAAAATACACCATCAAATTGGCATCTTTTCTTGGAGAAGGGCAGCAGTAGAGAATTATCAAGTTTGTCTGATGATACCTCAAAGAGATGTTATTTAATGAAACATGAGATCTTCAATTATAAATTGTTCCCACATTTCAGGCTTGCCTAGTAGACTTTTGAACTTTAAGCTGGTTTTTGTTATTATTGAAAAAAGTCATTGCTCATTTACAAAGTCTGGTTCTTCTTAGTG-TCTGACTTCAGAAGAGGGTTTACTTTATAAAATTAACCTGTAGAATAAACTATGCCTCCTATGAAACCAAGTAGAGAGGAATGGGTTTCTAGAGTAGTCACTCTAGGACTAATTTATAACTTACTTAAAAGCTGCCATATTCAATAGCAGGTCAAATT----AACATTAGATCCAATGCAATATTTAATATATGGAAAATTTGCTTTTACAAATTCCAAGGAGGAAATCTTTCTGAGCCTGGAGTCTTCTGTTTTGTTGATCCAAGATGTCAATTACTGCTCTAGTTACCTGAAACAAGTGGTCTTTG------AACTGCAGCTGGAGA--GGAAAACAAGA--------------AGACTAATAGAATGAGTGGGAAAAAGCATAACATAAAGAAGAAAGCATAGAATGGGAAATAAACTCAACATGCCTGCAGA----ATCTTAAAGGCAAGACTTGTGGGATGTTAGGTCGTCTATTTCATACAGGAAGCAAAGTCAGAATGAATTTACTTAAAAGTTTGCAAAGAGGTGCTATGCT----TCAttaagatcgcaagcctctccaccagacaa-----ggggctcacattcctcctctctataatactccctgagtgaccgaattt--ctgcttattttttttctgtgaccatttctacacatcta-------aggtggaaagtaattcctacctctaagggttattgtgataattaaataaaa--caTTTTCAGAAGACTCT-AACAGAAACGGATA-----CTAAAGTTCAACAAATAGTATCAGGTCTAAGAATTTTTTAGCTTTAATGTAG-TAAGAAGTATAGAACAG----CTTACCCTGTAATCTTTTCAAAGGCCATGttagtaagatgcaatttacataccataaaattcacccactgtaactatgtaacccagtgactattcttactaaatttatagCACCATATACTTCTATCTATAGTATAGATATA
s HiC_scaffold_1 131485188 3071 + 233722169 aAATGTAACATAGTCAGtgactaatatttaa---aattctttctatcTAGTTATGATGATTTGCTTTCTCAAATACCTTTGGTATGAAAACCTCAATAAGAAGATGGACAGAGGATAGAGTCTTCTTTAGATTTTGGGGAAAAGCTTTTACAGTACAACTGTTTTAACATGTGAGTTTCTTTTCTGTCCATATcacattttctgcattttctagaaTAGCAGCT-CTGATAATGTTTCCACAGTCTTGACTGGTGCCATGTAGAACAATGACCTTTGAAAAATGATGCTGTTAAGTAATCACCAGCAAT--TTATAATTTAGACATGtgactt----tctctctctttctacttG-AATGTGAATATTTTACAAAGGCTTTGtggagaaaaaacattttttccctttttgaat--aTGAGAATTGGGACTCAAGCGTCATTCCAAACCAAATTCCA-ATGTGGAATTATAACCCCTACCTCTGAATGGAAATCATGGAGCCCCTTAGCCAGAGTGGCAACTGGCAGTTCTACCTTGCTCTCCAAGGACACACACAGCGGGATACCGACCAAGAAAAAGAACAGGGGATGAATATGAGGGAAAATGCTAAAACCATCTGGACAGAGCC-GTGTTCCTATTCTGCTGGTACAGCAGGATCCTTTTTAT--------CTGGAGTCCAATCTCACTCTCATGGctacatttaaaagaataaatagtgAACCTTGTTACTGTCTTTTAGAGCGTTCATGTGGTTTAATGGAGGAGACATCAGATTTGGGGATGGGGGTTCAGGAAACATAGTTCCATCCTGG---CCTCAGTATGATGCTCTAAACACTTTGAATGCaaactgcttttcct------ctttga-gtaTCAGCAGTATGACTGTAAATGAAGATACTATGCAGGATCCACTTAACAGGTCATGTGGGATAA------ACATGCCATAGTA--------------TCGGGATTTCACCCAGAGGTGAGACCAGGCCTATCTCTTTCAGATATTGAGACCGGAAGGCTGTTGAAAGG---TAACTGCAAC---TGTCCTGAAGCCTACATTTCACCAGTCCTCTCTTGCTT-------------------TCTCAGAGCTGGATGTTGTCATAATACTTCTCTGGTGGTCTATGTCTCCCACTGCTATCTTCAGATGGTCCAGACAACACTGACAGTGCTTCCTATTCTGATGGTGCAGAAAGACAAAGTTGTTACCACCGAATTCCTG--CCTACTACTCGAAGAGCCATGGTGCCAGGATATTGACCCTGGGGCTACTGGATGCAAGCCCTTTGCCAACCACCAACCTGTGGACTTGGTCATCAACAAGATTCTGCAGCTCTAGTTCAGAATCCCAGTGGTCACTGTTATTCTCCAACTGCAGCCAAGATGATTCTTTT--GACCTTTCCATTCTCTgaaagagagaaattgatataaaCCTTTATACAAATATATGAGTTCAGGAGTTGGTTATAATGAGATTTAAGTAAAAACAAAGAGatacaaggaaacaaaacaattatctaataaagtaaaattgaacaaat-acaTTTTCTACCTGCATAGAGATAACAGATTTCTAGTCACAATTGTGCGA-CAACATTATCATT--GTGGTT---------------TAGCGTCCGTGTGGTCCTTCAGAGGGCTTGGTCTACAATATAGTGGGCTTAGTCAAAG-ATAGTTTTGACAATAACTGGGGGAAA--TGGCTTGGTTCCTTATTAtaccatcttctgttc------tttcttcttaTCAT-TCCTCCAGAATG--CATTTATACATAATGT-------------AATCTTCAAAAGAATGTAACTTATAACCAGTACAGGCACAGGTACAAATAGAAACTGCCTCAGTATTTACTTGTGggttattttctacattttttccatttctaa---gtCCTCCCCAAAGTCCAATTTT-TTTGTGGTAAGAGAAtatcttcctctttaagtttgtA-ACGGAGCTACATAAAATTCTCCAGACACATGTTTAAAATGTGTGGTCAAACTGGCATCTTTTCTTAGAAATGGCCAGTGATGGAGAATTTTCAAGTTTGTCTGATGATACctcaaagagattttttaaaatggaacatTAGGACCTCAATTATGAATTGTTCCCACATTT-AGATCTGCTCAGTAGACCTCTTAACTTTAAGCT-GCTTTTGTTATTAatgaaaaaagtcattttttataTATGAAGTCTGGTTCTTCTTAGTATTTTGACTTTACAGGAGGATTTAATTTAGAAAGCTAACCTGTTGAATAAACTGTCCTTCC--TGAGCCCATTAAGAAACTAAGGGATTTCTAGAATATGTACTGTAagattaatttatatttctcccaAAAGTTGTCATATTCAGT--------AAGTTTTGCAATCTTACTAttaatgcaaaatttaa--------------------gcaAAATCTAAGAAG----TTTCCCTCAGCCTGGAATCCTTGGCTTTGTCGTTCCAAGATGTCAAGCACTGCTGCACTCAGCAGGAATGAGAGATTAAAGCAGCAAAGACACAGctgaagattaaaaaacaaaacaaagcaaaacattgaacaaaaaaaattaatggaaaagtgAACGACCCAGGCAGGAGAGAATA-----------AAATTCTACATatctataaaaaatattttaaaggaaggaATTGTAAGGAGTTAGGCAGTCTATTTCACAAACAAGACAAAGTCAAAATTGATTTGCTTAAAAGTCCACAAAGAGAAACTAAAGTGCAAGCATTAGGAACCTGGTCCTTGTCATCATACGAAAACTGGGATTCAAATAGCTTCTCTC------ATTCCGAAAATGAATGACACTAGatgtttgtttgctttctctGTAGTTCTTTGCTCATATGAAATAACAGTTGGAAAATAAGTCCTGTCCTAGAGAATAACTGtgataattaacaaaaaataatttttacaaaactTGAAATAGCTCCTGACATTTCTTTAGTGTTCGATAAATAGGAGGGAGTCCAGGAA-ATTTCAGCTTTATTACAACTAAGAATTAATGAatgattttcttatcttttaataattt-aaaaataatgctaacaAAATAGAATTT-CATGCCATAAAATTCACCTATTTTATGTGTATAA----------AGTCTCGGTAAATTTACAGAGCCACACAA--CTATCCTTAACATCTATATA

a score=48521
s chr3           145216415 2050 + 160039680 CTTTCTCGCCCCTTCCAGCTTCTGTGCTCCAGAAAGT--GCTCATACTTCCTGCTTCAACATGGACA----------CTGCTTGT---------------ACCATTTTGAAGATCAGCCCCACCTCTGCCCAGATAGCCCTAGAATATCACAATCAGCTTGAATCAGAGCAATGGACCTCCTT-GTGATGTAGATTACAACagagagagagagagagagagagagagagagagagagagagagagagacagacagagacagagagacagagagacagagacagagagacagagagagacagagagagacagagacagagagaaacacagacagagacacacagagagagagagagagaACTCTCTAACAATCAGCAGTCCCTTCCATCTCTC-AGCAACCCACAGTCTAGCGTGTGGCTCCTTACTAGGACCACACAGAATGTGACTACACCCAGAAAAAGCTTGAAGGCTCTGTAAAGCAGAAGTCTGCTAA--CTGTGGAGGGAATGTGCTGA-TGACTGGGAAAGTCAATGGGCTTTCCCAACAGTCCTTGCTTTTCATCTTTAGCTCCTAAAGC--AGCCAGAGGAGTTCTTCAAGCTGTAATAGAAAGCACAGGCTTTGGG--AAGGGGTAGTTGTCTTCCACTCCACCTAATCAGCCTATGGAGCAGAAAGCCAACTTGAAAGTCCAACATTCTACTGGGCAGTATTAAGTTTCAATAGTAGCTACACATGTGTAATGAAGCTAGGCTCCGG-CCCAGAAAACTAATCCCAGAATGTAATCA-GGAGGTAGGGTTTGCTCGGAGTACAAGATGGAAGGAATTAATGACAAGTCCCAAGTAAC-GAGGAGGCTGCCAGAGAGGACGGAACATAGCATAGGGGCAGGGGA-TAGGCGCCAGCTTGCTTACCCTCCCTGCTGCTCCTTAGCGC-------CCCCGCCCCCGCCTTGTAGAAGCCTGGCATTCGATGCAACCCTTCAGTAGCTTTCAAAATGAAAGAGACATTGTTGC------------AGTGTCCAGGGCAGCTCATCACAAAAGGCAAGCCCTCAAGAAAATTTTGTGGTGAATTTTCCAAAGAGGAATTTGTATGTCTGCGTGTCTCTTAATGAATCTGTCTGCTTCTTTCCTGAGTGCTAACCAAGAGAACATCTGTGTGACAGAAAGTAAAACAAGATGCCCCATGGAGCCTC----AGGGATGTTCTTAATAGAAAGGGACTTTATCCCAGGGGGAAAAAAATAAAAGCAAGTTATTGGATTAACCAAAGGTTCACACTGATGGT---------------------------------TCCTTCCTAGTCTCTGTGATGGTTTTG---------------------------------------CAAATG----------GTGCCTGTCAT--TCCCTGGACTACT-----TCAGGGGACTACTATGCATTTTCTCTTTATTTACACTTACACACAGACATTTGAGTTGGGCA-GATTCACTACCATAGCTGACCTCTGTGGATTGCCGATGGATGGATTCATTAGAGACTGAGTAAGCAGACAGCAAGCACTCATGAGGCAAACACCAAACACTATTTGTCACGTGGAA-----------AGTTTCTTGTCATTGTGGAATCTTACACTATCACCAATTGAATGGGAGCGGGTAGGTTTTGTGATCTAGTAGTCGCCATGACAACCCAATCTATCTATTGAGACTACCTCCCTCCAGCTTAAACAGTGGGAATGTTC--TTTGAGGCTTTGAGTGTTTCAAAT--------CATATTTTAAGAAAAATGTAAATCTCTCTCCTTTATTCATCAAGAGTCTACCAAACAGACAGTCTCTA-------------TTTTGAATGTGTATACTACACTCAGTATTTG--AACATTTACCTGCTCTTGTACCATAACTCATGATCCACCTAATTGATTTGGAAATATAAGTTCATGAACT------CTGACCTGGGCCTCCTTCCACATCCAGTTTGGCCAATTG--GTAACGGGAGGATTCAGATTTAA-CTGTTTGTTCACTGAACAGCT-----------CAGAGACACTTCTGAGGAGAGGCCTTTGTGGACTTCCCGGG-AGCTACCC-CTCGTTGGGTCT---------GTTATACTCA------TCAGCCTAGGTTCCCTTATCTGAAAAACAGTGGGACAGGAAATTTTT----TTTCTCAAAACTCTTCATTTAGATACCCCTGATGGAAGAGTGA
s HiC_scaffold_1 131492733 2049 + 233722169 CTTCCTCATTCTTCCCAGATCCCATCCTTT-GAGAGTTAGATCAAGATCCTTGTTGCAACATGGACAGTCTATGAGACTACTTATTTTCAGGTTCCTGTCATCCATTTGAAGATGCATCCCATCTCTGCCTAGATGATTTTGGAATATTACCACTAGCCTAAATCAGACTAGTGGACCACCTTTGTGATGTGGATT----------------------------------------------------------------------------------------------------------------------------GAAACACCCATA----CACTC--------------------CCCTAACAATCACTGGCTACTCTCGTCTCCCTAGCAGCTCTCAGCTTGGTATGGGACTTCTTACTAAGGCCACACAGAATGTGACTACATCCAGACAGAGTTTTAAGGATCTGCAAGGCAGAGGCCTGCAGACTCTTTGGGGAGAATGTGCTGATTTTTTAGGAAAGTCAATGGGATT----AACAGTCCTTGTTTTcctctttcaagttttaaaataaaattggagaAATCCTTCAAGTT-TAACAGAAAGCAGAAGATTTCAGTTGAGAGGTAATCATCTGCTACTGAATCTAATCACCCCACAGATAAGAAAGCCAACTT-AGAATCCAACATTCTACTGTGCAATATTAAGTTTCAGTAGTAGCTACACATGTGTAACCAAACTAGGCACTGGTCCCAACAAACAAATCCCAGAATGTAATCAGGGAGGTAGGATTTGCTGAAAGTAGAAGCTGGAAGGAATTAATGACAAGTCACAAGTAACAGAGGTTCATGCCAGGAAGAATGGAATCTAGCATAAGAACAGGGCAGTGAGCACCAGAATGTCTACCCTTTCTGCTGTTCTTCAGCTTTGTTCTGCCCGACGCTTAATTTGTAGAAGCTTGGCATTTGATGGAGTCCTTCAGtagctttcaaaataaaagggaCATGGCTGTAATCCGAAGCAAAATTTCCAAGACAGCT-ATCATAAAAGGCCAACACTTGAGAAAATTTTGTGGTGAATTTTCCAAAGAGgaatttgtgtgtctgtgtgtttcttAATGAATCTGTCTGCTTCTTTCTTGAGTACTAACCAAGGGAGCATCTGCATGACAGAAGACTGAACAAGAGGCCTAGTAGAAGCTTCCAGGGGAATACagtaaatttaaagtatttttgtccctttaaaaaatacat------------ctggATTAACACAGGGCTCATTTCAAAGGTAGTGAGACACTCAGCTCTTAATAAGAGACAAACCGCTCCCTTCCCTTAAAGATAACCTTGGAACATCCCAAAAGCCATCTCCTTCCAGTTCCTACTATCCAAGTGCTACCACGTTCTGCCTGCCACAGTGGCTGTACCTCTGCCAGTCTGTGATCTGTCATGCATTTTGTTACTATTCATAGTCACATGCAGGTGTATGCGATCAGTATAATGCCCCTCCAACTCTAA-CTCTTTAAACTACTTGCTGAAGACCTCACCA------AGGTAAATAGTGAGCAA-------------AAGCATTTAATAA-ATCTGTCGCATAAAACAGAGATCAACAGTTTCTTGTC-TTGTAGAATGATACTCCATTAAGAATTAAAAGGGATCTCATAGATCATACAATCCAGCCCTCACTGTGACAATTC---------CTCGAGAATACTTCTAGTTTAAATAAATAGTGAAAATGTACATCTTGAAATTAGGTGTGTTTCAAATCAGCTATGCATATTTTAAGAAAGATGTAAATTTCTT-------TTCGTTGGAAGGCTACCAAACTGGAAGTTTCCAACTGGCTgtgctctttt---tgtttctttttcactgaGAAATGGCTCACACTCA---GTTTTTATA--------CATGTTCCTCCTAATT-------AAATTATAGTACATCAACTGCTGTATTGATCT---CCCCTTTCCCCCTAAAATTTGGTCAACTGCTGTatggaaatttttttaatttagtttttttattcatTGGACAGATCTTAATTTATCCAGAAACTTCCACAAAGGTAGACTCTTGAATATTTCATGAATTGCTATCCACCAACTAGCTCTAATCTTAAAGTAAATCTTAAGGATCTGGGCAtgagtttcttcatctgcaaagaaAGGATATATGACTCCTTTAGTGTTTCTCAAATGCCTTTTTTCAGGAACTcttca-ggaaaagaga

a score=17178
s chr3           145225018 764 + 160039680 CTTGGAACTATAAGTAAAGGAAGCCATAGTTAGTGCTGAAA-TACTTCTTTCTTCCT-AGAGATGTATAACTTAGAAGGGTGATATGAACACATGCACAGGCAAAG--------GAGGTAGGTGTGACATTGAGATACCCAGGCAGAATACTAACATTTGCACTCTCCACTCCTGGTGAAGGCT-CTTTCTAAACTCCAGCTCATGACTGCTGATAAGTCATCCTCCTGAGATTCCTGTTGAAGGCAGG------------------------------------------TGAATACAACTCATGGC----TGAAAGACAA--------------------------------CTAA--------------------AAGGTCTTTCCT------TCTTAGATGAGGAAAAGAACAAAAGTAGAAAATTCAAATTTAGCTGGGAAACATGCATGGGAACCCAGACAACAGAGTCACTCAGAA-AAACTCAGTAAGAGCAACAGTACAGGCTGAGGAGGCGCTGGGGGGTAGAGAAAATGGCAAGCTGAGAGC----ATGGTGAGAAGGAGT-CGTTAGACAAGGATCAATTGGGAAGTGAGTGGGAGTGGGAGCGGAGAGGTATGAAGATTTGCTAGGATCTGCAACATGCTTTTATGGGTCTGTGTGAGCGAGTTTCTCTGGCTT-AAGGTAGCAGGG-------------TTGACTTATAGAGGAAGCACATGGACC-CCAATGGTGGAGCTGAGAGCCAAGGATGGAAAAGAACTCA-GGGACTGATCACTCCTTGTGACCTTGCTTCAGAAACAGCTGAAATTACTCTGAAGCAGGAAAATTCAGAAACACCATTTCTAATGGGGGG--GGGGGAGAACGACAGGGGTATTTGGTATA
s HiC_scaffold_1 131510259 872 + 233722169 CTTGGAATTGTAAGGAAAGGAAATCATAGTTAAGAATGAAAATGGTTCTTGCTCCCTTAGGAATTTATAGTT---AGGGAGGAGACAAATACATGCACaagcaaagaaatgaaggagataggTGGG-----GAGATG---GAACTGAATGTTCAAGTTTAAGCATTGACGATCTGGTGTGGGCTGATTTCTAAATTCCAGCATATAATTGCTGATAGTTCATCCTCCTGAGACTCTTGTTAAAGGCAAATAGAACATTCAAGAACTATTTCTGGTCTAACATAGGGTCATTTGAATCAACCCTGTGACATTTTGAGAATCAAAGCTCCTCCTGGGTTAAGATTCCAGAACTGATCTAAGGACAAGGGGCGtggggcatgagattttctcTGATACATCTGAGACAAGGAGAAATACAAAAGTGGAAGATTCAAACTAAGCCAGAAGACACTCAAGGAAACCCAG--AGCAGAACATCTATGAGCAAGTTTAGTTAGAGTACAAATCTGGGATGCgg-------ggtaaatacaaagaaagccAAGTTTAGAACTAGATCGATGAGAGAGAGCAAGTTAGGAGGGAATCAAATGCGAGAT------GAGGGAGAGCTGAAAGACTTCAACATCTGCTAGCA-CTGCAGCTTGattttatgtgtttgtgtggGTGTGTTAGCCTGGCTTGAAAGTATCAGGGGTGCGGCGGCCACTTGGCACACACAGGAACCACATGGTCCTCCAATGATAGAGCTGAGAGACAAGGCTGGGAAAGAACCAGTGAGACTGCTCATTTACTGGGACTATGATACAAAAGCAGGTGACAC--ATTTTAAACAGAGTATGTTAG--GTAATATTCCTAATATGAATtcggaaaagaaaaaaagggctaTTTGGTGTA

a score=100818
s chr3           145230673 6075 + 160039680 [encoded data, 6484 characters]
s HiC_scaffold_1 131512512 5635 + 233722169 [encoded data, 6484 characters]

a score=30195
s chr3           145236692 939 + 160039680 CCTCTGAAATTGCTTTTCCGTTGCATAACTCCAATGTT---AAAATGC-CATGAGCCTTTGAAAAACAATTATTTATGAATACTGTCTGGATAAGTTATTTCACATTGATTTTCCTTATTAAGCCATCCAAAGAATTTGGAAGAAATTTGAATGGTCACGTGGGGATGTTTTTTGACTTGTGCAGGGTGGAGTGGGTGGGTGGGGGCGTGCCATGGCTTTGAAAGAGCCCGACGAAAA-CATTCATTTATACACCACAATTATGATCTGGTTGGATCCAGGAATCCTCTCATCCCCACCAGCAGCCGCCTACAG--TACCAGTGGGTCAAAGTTTACTTTGGACTGCATTAAAATAAGACATGTGAGAGGGTTTCTCACATCGACTTTCTCTAG-GCAGGAGCCGCAAGTCTTTTCCATTTCCTCTTTAAGACTGAAGACTGGGAAAGTCATCACAGAGACAAATTCATTCATTTTAAACATGTTATATAACTCGATATTGTTAGACCAGGAAAGGAAGTGGAAAAGACATTTC------------TGGAGTGGCCCATGGTGGCACATTACCAGTTAGTGCGCACTGTCAGGGACTGTGAGCCTCCTGAGGCTTCATGTTCCAAAGTTTTAGTGTTATCACTAGCATGTGTTATAGCCTATCTGGGTATTTGTAAATTTATCTCATAGCTATTTGTTAAAAATGCCCGACTTACATCAAGTCAGGAAACTGGCCTAGTC----------------GCTGCTTG-AAAT-CATACAATTTTAATTAAGCTAAAATATTTGCCAGCAGGAAATAAAATACATATGCATG-----TCCTTGTCATATTCATTATTTGATGAAATTCACAAATGTATTTTC---CCATACCAGGACTCTATGTGTGTGAAAAAACACTCAGTACAATTAACTTTAATCATATATTATTATGCGGTCACATTGCTTATGTTTTTTTATGCATATGCTAT
s HiC_scaffold_1 131521316 955 + 233722169 ccactgtagctgct-----gctatctatccaccatgttctcaaAATGCTCCTAATTCTTGAAAAAGCAATTACTTATGAATAAGTTCTGG-taagttattttgctttatttttcctagtTAAGAAATCTAATCAAATTAGAAGCACTTTGCATCTTCAGATAGG--TCTTTTTTGACTTGCGCTGTTCAAAGAGGA-------GGGAGTATTGTGACTTTGAAAGGGTCTGACCAAGAGCATTCATTTCCATGTCACAATTATGTTCTTTTTGG-CCCAGCAGT----TCATTCCCA--AGGAGCCACCTACAGAGTATCTGAGGGTCACAATTTATTTTGGATTGAATTAAAATGAGGCATGTGAGGAGCTTACATACACAATCTTTTTTAAATACAGGAACCAC-Agtcttttccatttcctc-ttaAAACTGAAGACTGGGAAACTCATTAAGGAgacaaattcattcattttaaacatATTATATAACTCAAGATTgttaaatcagaaaatgaaatggaaaagccATTTCTATCATGAGACTTGTAACAGTGTATGGTGCTGCTTTACTATTTAGTATGTGTTCTTAAAGACCATTAGCCTTAGGTgg-ttgacatgcaaaaactctaaTCTGATTACTTGTATTTGGTATTTCTCATCTGAATATTTACAAGATTGTCTCCAAGTTATTTG-TACAAATTCATAAACTATATCAAATTAAGAAAATGGTCTAATCAGTAGCCACATTATTTAGTACTTGCAAATGTGTACACTTTCAATCATACTAATATATTTTCCTGGATG-AATCAGGTATATATGTCTGCTTCTTCCTTTCCACATCC---ATTTCCAGAAAtttacaaaagtatttttatgCCATTGAAAGAGGCTATTTATGTAAAAAGGATTATAGTACAATTAATTCTAATTCTGTTCAATTATACAGTCATTGTGTTTATGCCTTCAAATAACTACACTAT

a score=32593
s chr3           145240976 2038 + 160039680 GCTCATGGTTGCAGC-CCTCTTGATTCTAACATCCTTCTCATATTCTTTGATTTAATCTGAAATTGTGTTCTTCACTATGCCTCCCAGGTCA-------------GCTAAT--GTAAGGAAGAA-CTATAGTGAATGACAAGGAACCTACATTGAAAGTGATTGCGCACAAATAAGGTAGAAAACCAGGGATGGTTATTGTTCTCTAGCCCAGTCTGTCTCTTCTCATCATACCTACTGTCTCAAGGGT--GGCAAGCATGATGCATGGTGTTTGCATGCTGACAGTGATCCACT-----AGTGGTGCTCCTCTCA--ACATATTTCTGTCCACCATAGTGTATGTG-TACACGGGT-TATT---------ACCTCCTCCATTGATCTGAA---TGAAGCCTCCATATTTGGCCATC----GCCTATGGCTGttgtctcccctatccccatgaacctggcaagaactcggttcagtttcttaa--------cctcttccagaattggaagaatctgccgagagggaaaatgatccc---aaaccaggtggagctctccacgtatgctgctgcttctgagaatttggtccccaatccccccccaaccccccaactactttattagctccacagtgcaat---------ttgcaaagtatattctttctaactcacctagtgatcatcagtaggagagctggCTCAGGTTGTCAAGTCTCATCTAACTCAAAACACAAAAACAAAAAACTAAAACCCTTTCCTGCACGTGGTGTCTTAGTTTCCCAACAGCTTGCTGTGAATAGTTGCATGTTctcagtatggtttaagccctttctatgttttctgtgctgtaccgcattcaatttttaacagccaccctatgagacaca--------taccaatccacttcaca------------------------------------------------------------------------------gaacccagagtac------aatttgatggtagtttgcccaaaggtcacatattactaagcagaagTCA---------------ACTCTAAAAACAACTAGTAAA-ACAGAGCTAGGCTGCCCTGTCAAGGTTAACGTTTATAGCTTAGAAACCAGGCACCCTGTAGGGACAAA---------------ATGCATAAAATTCTGAAGGGACACAGAAGA--CAGAAACTTTTTCTGAATTTACCCAAACACACTTAGGAA------CAAAAATAGCATTTCAGTTTGGGTTCCAAACATCCTATTATTTCTTTCTTTTATCCAAACAAGAATGTGAAAAAAAAATGTGGTCAATTC---TAAGTGAAGTTAAACTACTTAGGTGGGAAAACAAATCACCACTTTAAATCCATCTTTGTAAGTTTGTGGTGTGAGTTAACTCACAGCTCAGGAGCTTCAGGGACC--CTCCTTCATAGATGGAATCTGTCAGGTGACATAAAATAGCACGCCAGGAGCGGATGTGATACGGGCAGACACACAAGGCACATTTCACAGCTACATCTGGACAGGAAACCCTAAATATGGCTTGCTTTTCTAAGTAAAAGAAAATCCCGGCCACATATGTTTTTATTTTCCTTCTCAACATTTGGTGTATGAAAACATAGAGCATGTTACAGCAGGTAGTAGTTCCCAGGAGGGTCTTAGCACTTCTAAAAATATTTCCAGGGCCTT--GAATTCGTTCAGAGTTGAAGAGTAATATATATTTTTTGAGCTCTGATACTTTCCTAAAATGTATTTATTGGTGCTTTTTTATGTAGACTCTAGAACAGGTTAGCTGCCTTTTTCTTGAAATTTTGGGGGAAGCTATTCCTAATCTGGAAATATTTCACCCCTT-TGGTCAGCATCCTGGCT------GGGAAGCTGGGAAGCTGAGTTCCTGAGCTTCCCGTTTTGCTGCGGACCATGACTTTTGTTGTCTC--TTTGAAGTTTTAAATGTAACATCTGCTCTGTCTTCGGAGGAGTCAGAGCTTTTCCAGGAGGATGAGAATCCTTCCTTCCAAGGGGCTTTTGAGGTCTGTGAAGAA-AAAGGTCCGGTGCTTGTGGATGGATTCCACCAGACCCTCTGAGGCATGGTATGGTGGCCCTAATTACATGACCTAGCATACAGTATAGTGTTGCTAGAACAATCTTTCAGTATT-TAGGCCCTCAGTCT-----TGCTCTTATATCTGTTTGGTATTTCATTGTTTGGCT
s HiC_scaffold_1 131527486 2068 + 233722169 GCTCATGCTTACTTCATCTCTTGATTGCATCATTCCTCTTGTGCT---TGATTTCATTTTGAGTTGCTTTGGCTCTAGTGTCCCAAAAGTCATACAAAATCCACTGCTAATTTGCCAGTAAGAGGTTATGTTGAAT--------AGTTACCCTGGAAACAA---AATGTGACTAAGGGTGACTA--AGTGCTGGTTGTCACTTGTTCATTAGGCATGTCTCATCCCACCATCGCTTGGATCTTGACGTTCTGGTAAGTATAGTGTATGATATCTG------AACAGTGATGAACTTGCCTAATGATGCATTTCTTAGAATGTATCCCTGTC--------TTTAAGTAATACACAGCTGTATTTCATGTTGAGCTTTTCTCCTAGATTTGGAATCCAACGCTTCTCTCTTTGGAAACCTTAGGACTCTAAGTTTTGTCCTCCATGTTCT-ATGAGGCTGATAAAAGCTCTCTTCATCTTCTCAAGTTCTCAGCTACTTCTAGTACTGAAAGAAACCGCT---AGGAAAAATATACCCTGAAATGTAGGTTCAGCTTTCTGAATTCGATTCTTCTGCTAGACATTATATCAGTAATTCTTC------------ACTACTTTGTTAGCTTCCCAACATAATCAAGTAATTTTCAAAAGCATATTTTGTCCCACTTTCATAGTTATAAACACTAAGAAGATTGA---------TCTAGTCCTGTATTACT------GCAAGAAAAA-------------TCTCCTATGGTCAGCATCTCATTTTTA----AACTTACAGTGAATAGTTACATATT---AGTACCATTTAAGCTCTTTATATGCTtt---------acattatttgatttt-aatgacCACCTTATGAGATATAGGTATTTTTGATAATCCATTTCACAACTAATCCTATGTGATTATTGGATCATAACAAGTTATATTCTACCTGGACTTCAGCACTAGCGAATGAATAGATACAGGGGCACATAACACCACAATAATTTCa--ataatttgcccaa-ggtcacacagcagtaAGCAGAGGTCATCCCAGATCTCTCTGATCCCAATGCCTCCTATTAAGTATTGATCTACACTGTTTT-TCACCATTAAACTTCATAGCCTAGGAACTAAACATCCTACAGCTTCAGATTTAGATATCAGCCTATCCTGACAATTTTGGAAGGGAAGAGCAGAGCAAGgacatttttctaaatttgtttGAATG-ACTCTGGAAAAGGCTCAAACATAGCACTCAAGTTTG--TTCCTAAAATACTTCCATTTATTCTTCTAATT---------ATCTACACATCAACTGTGATAGGTTTAAATAAGTTAAATTACAAGGCTTCactgaggaaa-aaataattttcctaa-cATAACTTTATAGAC--ATGACATAAGTTAACTTAGACTTCGGGAGCTC-----ACCTGCTCTTCTGCGGTAGGGATCCGTCAGTTGACATAAAATTGTACACCATAAGCGGATGTGATACAGGAAGAAAAGCAAGAC-TGTCTCCCTGATACATCTGGGCAGGAAACCTTAaatatggttttcttttcttaaaaaaag-aaatcccagCCACATgtg-tattgttttcctttgtagCATTTGGTGTGTGAAAATATGAGGCATTTTACTGCAGGTAGTAATTTTCTAGAGAAT-----------TAAAAAAGCTTCAGTGACTCTAAAAATTCTTTCAGGAAGGAAGAGTGACATA----TTCTGATCCTAGATACT-------------TTTATTTATACTCTTTCATATGAAAACTAGAATAAGTTGGCTAAATTTTCTTGAATATTCTTGGAAACTTTTCTACTAACCCATAAATAGTTCATACTTTCCTatcaatatataatttttacaagTGAGGCTGTAAAGCTCAATTTCTGGACTTCTGGTTTATCTGTACACAATTACTTTTATTGtatcattttgaatatttaaatataaaatcagtACT-TCTCTAGAGAAGTCAAAACTTTTTCAA------AAGCAGTCTTCCTTACACAATGTCTGTTAAGTCTGTAAAGAACAAAGGGCAGATGAATGTAGAC--ATTTCTCCA-----------------TATG-------TAATTATACAGCTGAATACAGAGTA-------ACTAGAATAGTCCCTTAGTATTACAGGGTCTTTTTCTTCCAGTGCTCTGTTATCTATTTAATGCTTCCTT-TTTGGCT

a score=4035
s chr3           145241084 111 + 160039680 CTATAGTGAATGACAAG----GAACCTACATTGAAAGTGATTGCGCACAAATAAGGTAGAAAACCAGGGATGGTTATTGTTCTCTAGCCCAGTCTGTCTCTTCTCATCATACCTA
s HiC_scaffold_1  83880190 115 + 233722169 CCATATTGAATGACTGGCTTAGAATCAAAATTAAAAGTGATTAAAGACCACAAAGGTAGAAAATCAGTGAGAGTTACTGCTCAGCAGTCAGGCATGTCCCTTTCTACCATGGCTA

a score=9817
s chr3           145247170 238 + 160039680 GGAAAAGGGCTCTGAAATCGAAGCTGGCACA-------------CTTGACTTATTTCATAGTTCTGCAGAGAATGAACTCTTGGAGACACAAAAACTATCAGATAAATTATTGCTGGAAAACCTTGTGGAAAATTGGTGTATGCCTCAATTCTGGTAGCCTCTACACGCCTATTTATTTCTAACTCTCTCCAAGACATGCATCTGGGGTAAATTATGTTGAATTATCTCTAACAGGATTGGCTCATGACCC
s HiC_scaffold_1 131532943 247 + 233722169 gaATAAGGGTTT--AAATTGAAACTGATACAGCAGACATGAAACCATGATGTATTTTATGGCTCTGCAAAGGGTGGGC-CTTGGGGACTCAAAA-CTATCAGACAAGTTATTATTGGAAATGCCTGTGGAAGATTGTAGTATACCTCAATTCTGGTAGTATTTACATTCCTTTTCATTTGTACTTCTCTCCTATATGTGCACTGAGGGTTAGTTCTATTAAATTACTCTGAATTTAATTAGTTCATGACCC

a score=101988
s chr3           145252008 8345 + 160039680 [encoded data, 9516 characters]
s HiC_scaffold_1 131543120 8535 + 233722169 [encoded data, 9516 characters]

a score=14745
s chr3           145261640 1088 + 160039680 ATAGAATTTCCTTAGCTACAACTAGAACCCAGCAAATCTTTGGTGACATCCTGGTGGAATGCCTTTTGTTCTTGATGGGGGCACACAAATCTAATCTTTATTTCCTTGATTCAGCATAAAAGAAAACTCATGCATTTGTTCAGTCTTTTATAAATCAGGA--GAACAGGAAGGAGGCGCTCAAAGCCATTAGCAATCACCCTTTTCTCTGGTGGCTGGAGATCTAGAGGCCGGCCATTCAGCTGTGGTACTTCTCAAGGAATCCCCGCC----CCCTGCCTTCTCCAACCA-AGCTCAGGGACTCAATTATCACCTC-CACAACTTAA-AAAACATTAGAGTAACATAAACTTCTAAATGTGCACTGTGATGGATTTTAAGTACCATCTACAGAAGCTCACATCTAGCAGC-AGTAGGGTCACTTGGAAGTAAGCCAGC--CAGAAGGAGACTGCAGTTTCTCAATTAACCAAAAGCAAAGCAGGGGACAGGAGCACAAGGAAGTCTGAA-------GAACTCAAGGCTGACTTAGTAAGTCATTAGCAGTACCTACCCCTAAAGAGCATCTGTACCCCATTCTATGCTCCCCGGGTCTAGGGATAAGA--AGACTCAAAATCTGGAGTGGTGTTAAGCCTGCAGACTGAGGTTCAGCTGCCTTACCTCTGAAGCACAGAGCAAGGCGGGACAATGTGAACAAGT--CTGGCC---ACATTACCGCTGT----------------------------------------------------------------------------------AGCC----------------------AGAACTATGTTTGAGGTAAGCTGGACAAGAGATAGGCTGGTACCAGCTCTCAAAGGAGAttggaagtttaaatcggctatagtggaaacacttccacaacagg----------------aattagcaCCATTGTGTTTCTACCACAG------------AAAAGCTACAAACAGAGACCCTAACCCCAGTCT----GCTTGTTAG-GTATTTCTTAGAACACCTCTACATATATATCAATATGCAACTACATTTTTTAAAGCTTTTGTTAGAGAAAAAAAATCTCTTGGAGTTTCAGTTCTTTTATCCGCAAAA-TGTAAAACCCACCAATT-TATTATAGTGAGATCTCAGATAATAGCTTGCCCAATTTCTCTTTATTTCCCTGGTGCTATCTGTTCTAACTAGAGGGTGGTTA
s HiC_scaffold_1 131552388 1163 + 233722169 ATGAAGTTTCCTAAGCTACATTTTGAATACAGCATATCTCTGGTGACATCATAGTGCAATGTCTTGTCTTCAAGAGGGATGCACACAACTGTATCTAATATTTCTTTGACTCATCATCTAAGAAAAAGCTTGTATGCAT------CTTTgtaactcaaaatgaaagaagatagaGGAACTCGCTGCCTCTAGAAATAACATATTTCTACAGTGGGTATAGACTTAGTAATT--TTATTCATCCTGAACGTTTCTCAGACTATCCATGTCTTTGCTCTCCCACCTGTAGCTACCACTTTGTGTTTCAGTTTTCACCTTGTGCAACTGACTGAAATATTACAGTATAAGAAATTGATAAATGGATA-------------TAATTGCCATCTTTAGAAGCCCATGTCTGAATGTGAGCAGGGTTCTTTGGCAGGAAGCCAGCATCTGAA-GAGACTAAATATTCTC---------ACAGGGAACTAAGAAACAGGAACAAGAAG-AGTCTGAGGAAACTTGAACTGAAACCTGAGTCAATAGGTCACTGGTGG------------AGGAA-----------------ACAATCCTCAGGTCTAGAGATAAGATTGATCTCAACATCTGTAATCATTCCATGCCTATAGGTTGGGATTTAATGACATTATCTATACAGGTTAGAGGAATGCAAAACAATAGGACTAAGTAAATGGTCCTTGCATTATCACTCTTTTGGGGGGGCggggtactggagatcaaactcacatcctAATGCTCGCCCGGCAGacgcttatgcttctgagctaaattcccagcctttgCATTATCACTATTATATAAGAACTATGTCAGGGATGTGCTAGAAATGAAATA-GCTGGTACTAGCTCTCAGAGGAGATTG-----ttaaat---------tttaaggaattttGCAGCTGATTGTTAGTTTTAAATTAGTTATCACGGGCATATCCTTACCACAGACCTATACTAAAAAATGCCACAAATCAAGAACTT---TCCCATCTAAACATTTATTAGCGTACCTCTGGCAGTACCTCCCACTA---GTCAA-AGGTAACttcactttttcaa-tttttactggAGAATCAACCTATCT--GAACCTCAGTG-TTTTGTCTATAGCATTGTGAAATCCAGTATTTAGACTAGAAAGATGTTTTAGA-AACACTAAGTCCCACATTTC--TATTTCTTGGATGCTATGAGTTTTAACCAGAAAGTTATCA

a score=35814
s chr3           145262787 1786 + 160039680 TTTATTTTAGAAAGACGGTAATAGTTCTTC-CTCGTGGCTTCCCTACAATGCTTTCTGAAA-CGTTGTTAT--------TGTGGAGTCAGTTTTTCC--TGAGGATGTCTACTACCATAAATTCATAAAAGAATATACTTTTCAGCTTCTTCAACAATAAATACCCATCACATCAATGACTGAA----------------GGAGAGGAGGGTAGGTTCGTACTACTGACGACATTCTGTGT-CCCAGTGTCCACTAGCTGTACTAATTCTGTACAACCGACGGACTAATTATAACAATGCCATCTGTGATGTTCACTCAAGGAGATGGAATTTGGGTGAACTAGTAAAGTTGAGATGAGGACAGGGGCCCAGCTTGAAATTAGGCACATGGTTCTATTAGTCATGGATGCTAAGAGCAGTGGGAAAAAACATGAGTAGGGAGGAGGAAGGCACACAGCTAGTA---------------CATAGATTCAACATGATTTTGTCTTGAGGAAGCCTATCTTGTCTGCCCTTCTGCTTGTTACA-ATATTGGAGTCTTGACTAATTACACTCCACAACTGATGGACTGTGTGGAATGTACCAAAAAAAGCATTGATGTTAAACAGCTGGTTGTGATTTCCAATGCCAGAACCAAGGAGGCCAAAGAAAATTAAGCTGTTTTGGCATAAAACAAAGACATCATTGTAAGTGTCAAGACA-CGTTTACACGTTGTCCTAAGATCATTGTGTAATTGTCTGATGCTCTTGACAAGTTCTTCAAGAACCGCCGGGCCAGTTCTTTTGAGAAAAGAAACATACATGATATACTATC-AAAAATGACACTTACAAATCAACAGCAGGACACAGCTGTTGGTGCCGGAAGGATGACCTGTCT--ATCGTTCCTGTTTATTGATTTATTGACAT--CTCCCTGCTTTTTACAAAAATGTATACCCCTTCCTGTCCTCACAAGCATCTCCAGTATTTCTATCTGGAGTT-----TTGTATTTGTTCTTCTCTGCAGT---GGCTCCCTTTGCCCTCA----GCTCTTCCTTCCTCCACCC----AGTTCT---GTGACAGCCCTATGCCA--GCTCC---CCAATGTAAA----------TTGGCATTGCATATTGCCTAC-------------------------------GTACAATGGCCTGGCCTTGAGCT-------------------TGTCATC-TGCTGCCTCTG-GGACCCATGTGCTGCGGCGCCATCAGTTGATGCCTAAGACCGCTAGCTGAATTCCAAACCGTTTGTTGCTAACCTTGCTCACATTTCCTAAACATTTCT-AGATGTTTCTGGAACATCTAA---------------ACAGTT-----------AACGTACTTCTTCA-TTGTCTTCATTGATAATTGTT-----ATTGCCGACTATAAAGC--CTTCAGGGATCAGAGATTCTGGAGTAAATTAGGAATAACTGAGTGTAAAAAAAAAAATCTTGGTCAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCAACCTAGTCAAATTTTCCTTGCTGTCTGAAGTTTAAGTTCTTGATTAATTAGAGCTCAGATGGAAATTTAAACTCGAAACCAGATGAACTGGT-TAAGTACCACCTCCTCTAGCAGGCAAAGCATATTTGAGAGTTTCATCCTTAATTTGTCTTTTTCATGCCTTTAAG---------CTTTGAAAGCTACAGAAAACTTTTAAAGACATTATCTATGAAACCACATGAACAATATTCCTTAATAAAACTAGTATTGAACCCAAAGTATTTCAACCTTAAGACTTaaagaaagaaagaaagaaagaaagaaagaaggaaagaaacaaacaaacaaacaaaATATCCATTTACGAGAAAATCAAGTAATTTCATGTTTTAATCA-TATCTTTA-ATTTTTAAATCGATAAGT-TTTACAAAGCTTCTTGCAGACATTATTGAAGCCTT
s HiC_scaffold_1 131555185 2032 + 233722169 tttttttttaaagaaaactaataaTGTTTCTCTTGGAGTTTT-----AATGTATTATGAAAACACTGATAGAATAAATATATACAGTCAGCTTTCCCACTGAGGACATTTACTCTCATAGGTGTATGACAGAGGATA-TTTTCACCTTCctcaacaacaaaatcaaaacgTCTTGATAAGTGAGAAAACCTGAATGGATGGGAGAGAAAGGAATTTTGGTCCACTAGAAGAAATTTTATCCACCCATTTGTTA--AACAGTACTACATCTGTATAGCCAACATGCTCA--GAAAAGATGCCACCTGTGATGTTCACTCAAGGAAACAGGATTTGGGTGAATTAATAAAGATGACATGAGGACAGGGGCACAGAGTGAAACTGGGCACATGGTGTTTTTAGTTGTGGGTATGAAGagcaatggaaaaaaa------tgaagaggagGAGCATGTGTGACGAGTGTAAAACATTACTGGCCACAGAGCTGAAACTATTTTA-CATAAGAAACCCTATCTTATCAGCCCtgtgattttttgtttaaattaggAAAGTGATTGATTGCACTTCATAACTGATGTTTTGTGTAGAGTGCACCAAATGA-GCATCAATGTAAAACAGCTGTTTGTGATTTCCAATGCCAGCATCAAGTAGGCCAAGTAAAATTAAGTTGTTCTGGCATAGAACAAAGACATCATTGTAATCCTCAAGACAGCTTTTACACATTGTCCTAGGATCGTTGTGCAATTGTCTGAGCCTCCTGATAAA-TCTTTTTCTGCCTCTGAGCCAGCTATCTTGAGAAATTAAACATATGTGATTTAATCTTGAAAAATGACTATTATGAGTTAATGGCTATG-AAAGTCCTTTGTGACAAAAGAAGagcatttctccatcaattctgttcgataatttttttctatgcattcttcgattttaaaaaaattt-------tttttgtctttttgag-----acggggtctcactatgcagttcaggctggccttgggctcactttgtagctcaggctggtctcgaacttgcaataatcctcctgtctcagcctcctaagtactagcattacaggagtgtgccaccactcccggccattttaaaaatcttacttttaGTTTTG---ATTAACTACTTCTGTCAAGATGAGTGTTAGTTTCTCTTCTTTATGGTGACTTTTCCCcctgttttttttcctcattcagtAGTGTCACCGTACTGTCTCAGCTGACCCCTGCACCATGGTTCCATT--------TCTGAG-------GATGTAAATCGAACTGTTTGCTGTCATCTTTGTTCACGTTTTCTACATGTTTCTAAGATGTTTCTGTAGCATCTAAATAACAAATAAGTTTAcagtcaaataataacaaataaatttGTACAGTCAGCCTTATTGATTATTGTTTATGGATAATTGACCATAAATCTTCTTTCAGGAACAATGATTCTGGAATAAGGTAGAAATAGCCGAATTT----TCAAAAATCTTGgtcagccaggtatggtggcccacacctgtcgTCTCAGCATTCtagaggctgaagctggaggatcactgctagtttgaagccagcctgggctacaaaaatgagtttaagttcagcctgaactgcatagtgaactgtctcaaaacaacaacaaacacaaattGGTTAAAACAAGTTCAGGCAAACGAACCTAGTCAAATTTTCCTCGCCttcttaagttttaattttttattaatttaagctAGGATGAAGACCTAAACTGCAAACCAGTTGTACTTGTATAAGTTCCGCATTCTCCAGCAAACAAAGCATATTTGAAGCTTTTATTGTTA------CTTCAGTATTCCTTTAAGAGATTCTGACTGTATATATTACTTGAAAATTTCAGGAA----ACTGATAAAACCACAGGGGAAAAACTACT--ATAAACTTAATATTAAGTTCAAAGTATTTCTGCCCTcaggttttaa-------------------------------------------------aatttctctgtttggaagaaaaatgagttattttgtgattaaattattatttttatttttttaaagcaacaacTAGTTATAAAGTTTCTTACAGGCAACATGGAGGTATT

a score=44699
s chr3           145276949 1871 + 160039680 aaaaagTACATTAAATATAA---TCTTGAGAATTTT--TTTATCCATTTCTTAATTTGCA----TTTCTAAAAGTGCATCCTGAAAGTCTAAGAAATATTTGTTGGATCAAA-----GTTTAAATATGAGAACAAGGCCAGAATGGGTAAATTTTAGCCCTCTAAAATTTGCATTCACTAATTCAGTATTGTTCAGGAA-TAttggacaagttcttgagtttcagcttcctcatctatataaacaggaagcactaggtgaggtaatgatgaaagatggccttcagccctgaaattctgtgattTGCTAAGGACAGAGCCAAGGTATCTGTGCTTACTCATTAACAAATAGCAAGGCAGGACTCAGTCCTCATCATTAGACCCTGAAAGCGGCTGATTATGTGAGTTAGTAACTTTACACCAGTGCCCATCAGTTAGGTGGCTTTCTCC----CCTAAATTCTCTCTACTTGGAATTTAAGGATCTC-----------CCTGATCAGAATATTTTAGAGATGGCTTTATATTATAATAAGAATCACATCATAAAACACTG-GAGATCTTGGGCCCTACAGGGTGGA-GTAGACAGGCAAAGGCACCAACAGTTTGAAGAGTTGAGTGATCTGTTCATGTGTTGG-------------TTGCTAAGCATCCTTGATCTTGCTCCACGGCCTGCTCAGGGAAGATAGTGGTT--TCTGAGGGATTTCTGCAAACATATGTAGCCAGAATCCCTGCATTACCTGCATACACTTGCTGAGCA---CTGTGTCCGT-----ACTATT-----TTAATCATGGACATAAACTTATTTAGTCTTCACAGCAAAGGAGACCAAAGCTAAGATATCCAAGCCAGTA-AACCAACA-GTGAAG-----------CAGGACTCAA-TCCTTATCATTTGATCCTGAAAGAATCATAACAGTTTTTATACACATTTATTTTCTTAGCCCCAACATGAGTCACATAATGGTGTAAG---------AAATGAATAATTCAGCCATTAAGATAATAAGGACTTAAGGCC-AAATAGTCTTGCCTATGTGTAGACTA--------GTTTCCAGACTATTCACATTTGCTGAGAAAGTCAATTACCATTCCTTGGAGACCAGCAGTGTTGTTACATTAGCTGTTGATCTGAACTTCATCCAGGTCTGGTGGGCCTTGGGTGCTAGCCCTGTATGAGGGAAAGCAGCTGTGCT----GTCAGCATGGTGAGGCAGGTGGGCTTCTTGATGAGTTACAGAATAACAACAGAGGCCAAGGGG----GGTGTGGCGTGGTATCTCCTTCCAGTCAGGAGATAG-----TTGTCAGCTCATTCTTCAGAAAGAGTTTATCTCAGACACTTTCCCCTTCCCTAGAATTCAGTAAATCTCGT------GTACAGAAGACAAGAATAATTCTGGTTTCTATCCTAATTCAT-TTTCCTTAATTTAT--TATCCATGTATTCACATTAAGTCATTAAAAATAAAACTGGAATGCA---CAGACACTTCCTCACACACAGGGAAAATTGTCTTCCAACTGTCTTACTAATGCTGGTAAGTTCTCTCTCTCGTCTTACCAGGACCAGGATGTTTTGGTCATTAAGTCTGAGTCTTTCAACATGCATTAATTATAAGAAAATCATAGTCA-----TTGGCTTTTATTCCAAAAACTATTTGCAGCAAATTTTGACTGGGATATGCCTAACCCTTGACTTGAAAAAGCCCTGA----AGCTCCACGTATTTCTCTTTAATGAAGTCAACTAGCTTTACAAACCTCAAGTACCAAACAGCTAAAGAACTCTCATGCTCTGGGTAATTCATCTTGTTTTCAAATGAGACATTACTTTTCCCCCTAGTCATTAAAAAGGATA-GTTAGCTTGAGAGCAGATT--GTCCCAGTGAACGGAT-GGGTCCTGGGA---CCAGAGAAGT------TCCACACCCAACATCATCTCTAGGACCTGGGAA
s HiC_scaffold_1 131564111 1864 + 233722169 AAAAAGCAC-TAGAATATAAGATTATTGAGGACTGTGCTTTAGTCATTTCTTCACTTTTAATGTCTTCCA------CATTTTAAGAGTTTAAGAAGT--TTGCTGGGCTAAAAAAAAGTATGAATGAGAGACCTGGACCACAAGGAGTGGATTTTCCTCCTCTA----------CCACtaattta------ttcagaaaatattgaacaactatatatatatatatatatatatatatatatatatata-tataatgtttgttAATAAGCAAAGATGTGTTCTGGTTCTCAACTTTTATGATTTGATAATG-----------------GTGATAGTTTA-----AAATAGAAAGG-----------------------------------------TGCTTGAGTTAGA----TGATATCAGG--CTATTAgc-atctggctttctctgcttccAAACTTCTCATCACCTG-AACTCAAAGACCCCACATACGTCAACTTGAT--GAAGATTTTAGAGGTGTCATTAGCTTATGAACAGGTCTTCATCAGAAAAATCCGAGAGACCCCAGGCCCTGGAGAATGGATGTGAAAAGGTGATCACAT-AGCTGTTCAGTGAGTGAGGTAATCTATTTAGATTTTGAACCAAGGATTAACTTTTTCAGCAGACTTGATCCTCCTCCATTGCCTGTTCAGCAATAAGATCAGCTGGTTTGAGAATTTCTCTTAAATCTATGTAGACAAAATCCTAGCATATCCTGCATACATGTGTTGAGCAATTCTAAGTCCTTTATAAATTATAACTCATTAAACATCACAATAATTTTATTGA------ACATATAAGAA--CTGAAGCAGAGGTATTTAAGTTTATGCAGCTAATATATGAAATAAGTAGAATTCAGGATTCAAATTCTCAT----TGACACTGAAAGAAGGATA-------TTGGACTGGTTCAGTTTTT--ACTGAAACCTCAGTTTCTCATTGATTTGGGGGTTtacaaaaatgaataattcaGACTTTGAGACTGCAC---CTTCATTCCTAAGCTGCTTTGCCTACATGAAGACTATAAAGATGATTCCCAGACTGTTCACATTTGTTTGTAAAGCCCATTACCATTCCTTGGAGACCAGCAGCAAGATTACATTTACTGGCGATCTGAACTTCATCCAGGTCTGGTGGGTCTCAGGAGCCGACCTTGTCTGAGGGAATGCAGCTGTGCTGTCAGTCAGCATACTGAGGCAGGTGGGCCTAATTACGAGGTACAGAACCAAATAAAAGACTCAGAGGCAAAGGT------TGCTCTATCCTTCCAGCCAGAGAATGGAATGTTTATCAACTTGCTCTTCAGAGAGATTTTA-CTTTGATGTTTTCCATTTCCCTGAAATTCTATAAACCTTGTGATGTGGGACAGAAAGCAAGAGCAATCCTGGTTTATGTTCTtattcatcttttctttattcattatatTCCCATATTCatatttaagaattataaatgaaattgtaACACACACCAGGC-CTTCCTTGCACACAGAGACAGTTATCTTCCAAC----------GTGCTGGCGAGTTCTCTTACTCATCTTACTGGAACCGAAGTGTTTTGGCTATTACATGTGAGTCTTTCAGCAAGCATTATTTATAAGAGCGTCACAGTTATAATTTTGGCTTATAGTcccaaaa-tattttcagtaatttcTGAGAGGGATATGCCTGGCTCTTGActaggaaaattaaaaaacatagcT-CATGTATTTCTTCTTAATGAATTCAATCAGTCCTAGAAACCTCAAGTATTAAACCAGTAAAGAACTCCCAGGATTTTGTTAATTCACCTTGTTTTATGATGAGACCgcatgtttttcttta--cattaagaGGTGTATTTTAGCATGGAAACAAAATCCTCCCTAGGGAGTAGATCACCTCCTACGACATCCAGACAAGTGGTTAACCCACTTCTGGCAACAGCTCCAGGCCTTAGGAA

a score=43322
s chr3           145280564 2057 + 160039680 CAGGTTTCCTGCCTTGTCCAAAGATGTAGGAAATTGCTGTCAATAAAGAGAATGAAGTATTTTCTTTTTATCGACCATATC----ATTTTCAGTTGTCCATAT------AATCTACATAACTGAAACAGCCTCTGTGAGCCCAGGTAGAGCCTTGTGAGCTTGGCTGGTACCTAGTGAGGTGGTTGA------GATAGCCACACACTCCAGGATTCCCAGAAATGCTTGAATTCCATGTCTACTAGCTGTGTGAAGTCGTATTTCTTTATGAGCATATAAACACAGGTCTTGATTAGTGGCAAGTCAGCAAGATTCAATCCGGTAATCATTGCCATTTGGGGAGG-TTCACAAGCAGATGCATCTGTTTTTCAGCTGATAGCTTAAGCAGTTGTTGAGTTTGTTTTGTTTTGGTTCCAAATGAAAACAAGGCTGCTTCTGG-TCACCTGGGGTTGGGTTGGGCTGGCTAATGGAGAGATAG-----------TAGAAGCACCATTTTTGTACTCTGCCTTAAATATAAACT-------------TGATAAG------------------------AGTTGCAAAGAAGAAG--------------TGGCAAGTGCAAGAGAAGGAAGAAAAGCTGGTAACTAA----------------CTCACATATAAGGCTCCAGGTTC-------CTTCCTCATAGTGGAAGGGA-----------------AAGGACTTG-----------------------------------------------------------------------------TATACTTG---------------------AGGATAAATAGATTCATTATCCTAATCATAATGACCTTCCCGAAGAATG----CTAAATTGTAAGGTGCAGCATCACCAGCCAACAAGCATGAAGATCATTTCTTAATAACAGTTAAAATAAGTGTAGCATTACTACTGCTGTTTTCACCATCTGTAAGAATTATATTATGGGTAAAAAACTCTGCTCTGTATTAGCCCTGAGCCTAGAGCTGTAGTTTCAAATCTGTATTGCCATTTGTAAAATGATCAATCCGTAGAGTGCCAAGCTCCAAGCATGGTTGGGGGATGGCAGCATTTATTAGGC----ATGTGT--------------------------TACCA-TGTCTATTTAGTCTCCATGGCA-CTCTCTGA----------ATCCCCTTCACCTCTCACACAGGGAAACTGAAGACGA--------GAGTTAGGAATTCACCTGAGGTTGCATGG----------ACAACGCCTGAATTTTATTCCATACTGGG---ACGTTTCTCTACTACCTTACATGAAAGTAAGTATACGTGGTGTCTTCTTCTGGAAAGTATATGTTTGTCTCTAGAAATATAGATGCCT-AAGGGGTCAATGATTCTCTCATCCAC-GTGGCAGGGGAATTTC-ACATTCCTGTGGATTTCCT-------------------AATGTTTTCTTAAAACAAAAGTAAGAGGGAGTAATAGAAGCTTTTAAATGCGTGGGATAGAAAAGATGATATGCACATAATTAAAACCATCTCCCATCATTTATACAACTGTACTTGATGTCATAACGCGTTAGAAAGAAGCCTTACC-ATGCAGCAGATCCTCACTCGTGATTTTTCAAGGGCTGCCT------------------CCAATTCTTTAT--------GTAATTGTAGCTCAAATCCCTTCCTTCCACATGCCTTCTT---TATAATGCTGATTGGGGGGAATTTTCTTCAGAGCTACTGTTGTCCGGCAATGTTTCTTTTGTATTTTATTCAAACCAAAGTCT-AAACCAAAGATTTTTAAGAGGAACATCCATCTGTCCTACAATTATTCTGGTTACTTTTGAAAGCATGTTCTAATTTTTTCCATTTCTTGTATTTCCTAAATATTTTCTGTCTGCACTTAGTATTTCTTTAAGCAAAATAATGTTCCACACTTTAGGTCTGGGACTGATGAAGTTCTAAGGGCTTTCACAC--AAAATGTGTTCCATAATGTATTGTCATAGTCTCAGGCTAGGAGGTGACAACATGACCACTGTATAGCAGTTATGAGGGTGAGAAAAATGTAAAATACC---AAAGTACGCTC-------ATAAAAATGACCGAAAATTGCAGTGAGCAGCTAGCCACCCCAAGTTCCAGAGTTTGAGA-CAATCTAAATAGCAAGGTGTTCTTGCATTTCTTCTCAGTTGAGTCAATTTTGGCACAGATTGTTCCATTAATAA-TTAACTC----CACACGTTAAA-----TGGAGAAAGTGTTAGAGAATCTTGAAACATAACTACAGTTTCTGAGAAA---AGTCATCTGTACATTTTCCAATCCAT
s HiC_scaffold_1 131566933 2338 + 233722169 CGGTTTTCTTAAGCTTTCCAAA--------ATATTGAAATCAATAGAGGGgctgaaggatttt--ttttcctgaccATTTTTGATACACTCAGTCATCAGTATTTATAGCATCTATGTTactgaaataatttctcatggCACACAGAGCTCCT-----GCTTAT---GTACCCAGGGAAATGGCTGAACCTGAGGCAAACACAAACTGTAGGATTCCTGGACACGTTTGTTTCACATATAAACTAGCTATGTAAATGTACATTCATTTATAAGGATGTAAATACAGGCCTTGATTAGTAGCAAGTCAGCAACATTAAAACCAATCATTGTTACCATTTGGAGAGGTTTTGGAGGCAGATACATCTGGATTTAAACTGAGAGCGTAAGTAAATaaagcatttgttttg-tttgtttccaaatgaaaacaGGGTCATTTCTGGTTTTCCTGAGTTTGGATCTTGCAGCTAGCAAGACAGACAGCCTTGTTCTTCTCTGAGACTAGTTTTTACTCGCTGCCTACAATGTAAGTTATAGAGTTCCaaatgaggaggaaaaaagagatttTGTCAAATGAGGTTCCaaatgaggaggaaaaaagagattttgttaaatgagaaggaaaaaagagattttgttaaatgaggaggaaaaaagagatttCTTATTTAATgagcaagatttaaaaatatttctttattggggctggggatttagctcagcggcataagcacctggcttgcaagcaggtggtcgtgagttcgatctccggtaccaataaaaaacaaaacaaaacaaaacaacaacaacaaaatatatatgtatatatttctttattgtgGCACAATGGATGGATCCAAGTTCC---TTGTTCTGTACTTGCTGAAGTATGTTgtctaaatgttaaaatg-----tcaTCAACTAATCAACATAAAATACAGTACCTAATGACAGTGACAGTAATTATGATGTTACTAGTGTTGTT---ATCATCCGAAAGATCTGTATTCCTACT--GTCACTCTGCTGCTCAGTAGATTTGTAACTGTAAGTTTGTCCTTAAGTCTATTTTGTTA------------------CCTAAACTGCGCATTTTAAAGGATGATTGGAGGACAGTAACACTGAGCAGGTACTAATGTGTCAGGAACTCTTTGGTATCTTACATGATACCAGTATTTCATTTAACTTCACAGCACCCCTGTGAACATAGTagcattatctttatttttcaaacaggGAAACTAAagctgaaatgaaataaatagggTGTGTGCCTGAGGTTCCATGGCTTCTAAACAGCAAACCTAGGATTTGATTCCATATTGGGCTAAGATCACTCTACTGTGTTGACTTCAAATGTGCTTTTTAGGTGTT----------AGCTATAGGTCTACCTGCAGATGTGTAGTTTCATGAAAAAGGCGTTTATTTTCTCACATACAGTGGTAGGAGGACTTCTACATTCCTGTAGGTTTCCTAAAATTCTTATATAATTTCAAtgatttcttaaaacaaaaataaggagGAG-AGTAGATTGTCTCAGAAGTGTCACATG---------------ACAATACTGAAATTACCATctattatatacataaatatatttgttatCACAGTACATTTAAAATAAGCATTCCTGGTAAAGCACATATTCATTTAT-ACTATTTAAATGCTGTCTAACTTTTatctaaaggaaataattatttattcCATCTGGTATATG-AACTTAAATCCC-TCCTTTCACATGCCTTCTTTTATGAAATGCTGATCGGGGAAAAACTCATTTTAGCTAGCTGTTGTCCAATAATGTTTCTCTTGCATTTTATTCAAACCAAAGTCTAAAACCAAAAATTTTTAGGAAGTGCATCCATCTCTCCTACAATTAGTCTGGTTACTCTTGAAAGCATACTCTAATTCTTTCCACTTTATGTATCTCCTCTGTATTTTCTATCcacatttagtatttctttaagcAAAGTAATGCTCCATGCTTTAGGGCTGGCACTAATGAAATCTGAAATAGTTTCCCCTTGAATATGTATTCCATAGTATATTACTGTAGTCCTAGGATACTGGAAAACAATACAACCACT-TATAGTGGTTATGGGGgtaggaaacttttaaaaaaccccaaaagtttCCTACCCTGGGAAGAAAATGATCAGCAATTACAGTGGGAACCTAACCACCCAAAATCCT--AATCTGACAGCAGTTTAAACATCAAGgtctttctatgtatttattagtCTTGTTCAGTACTGACACAAATAATTACATTGGTAATTTCACTCTGTTCATGTATTGTAGACTTTGTAGAGAATATTGTAGAGACTCTACAAACAACTA-ATTTTCTCAGCAGTTCATTGATTTGTATATTATCTAACTAAT

a score=53527
s chr3           145291497 2124 + 160039680 AAGAGGAAGGC----AGATCAAAGTCCAGTCCTAGAGAAAAAATATGGTATGAGAGTAATATCAGATTTTTGCATTGTTGGACTTTAACCTTCACTGTTGCCCCAAGGCGGGCTCCTGCTCAGCAAATGGAAAGACCATTAGCTGAGGATG-----CAGAGAGTA----GAAACTGTAGAGAAAGGGTATT--GTCACACACGGTCCTCCCTCA----GTAGACACGTCACGTGGT--TGTAGGTGCTAAAAGCATAACAGACAGCCAAAGAATAGATAGATGTGGGTCTCACTAAATTTACAAACATCAGTCAGAAAAATTAGA-------------TGAGAAT------------------------ATTTAGT----GTTTTTATTATGAGCAAATTCATAAGCTCGACTTTCCAGTATTAAAAGAC---TGAAAATAGGAACT-----CAGACTGAAAGCCTGTCACA-----------GCAATCAGAGGTGTAAGTTGTAAGGCTGTG---TGATAGCAGGTCCTTGCATGAGTGCACAGTACGAATCTAGACTTGTAACAGAGTC------AGGCCCAGGGAC-TAAGTGGAAAGGTGAATTAC-----AGGAAAGTCACTAGAGATAGTATATGGGAAGGGCAGTTAATGGAGAAAGAGACAGGCAACAACAACGGAAGC-CGGTCTGCTTCAT-TACTAAGACCACTGGGACCCC-----CCCCCCCCCAAGCAGGGAAAGGAATAAAAAATTAGCTGAGCTC--AGGAGGATCCCAGGTGTGAAGAAAGATAGTAAAGAAAAAGCCTGATGGATGGAGAGGCATGCAAGAGACACACATGAAATGAGAACCCACTGGTACAGGGAGAGAGAGGAAGGAGTGACCCCAAATCACCTACAGCTAGGAAGTGGGTACATCTCAAGGGGTGGCAAAAGGTCACTTGAGAGCTCAGGGTGCAGCTAGCCCAGCCTGACCCTGCTAGGTTGGTGGACCAGGGCAGCTGGGGGCAGCTCTGGGGTGGAAGAAGGTTGCGGGGCAGAGGGGGAGGTGTGCTCCGTGTTTAGTGACGTCATTGCAAGTCAGTGCGCGGTGAAATTTAACACCAGCCGGATTTACTAGGCTCCTCTTCTTCCAGGCGAAGCAGCCGGC---AGTCAA-----GCGCCTGCAGTTGCCACCGGCCCCCTCGGCACCAACTTGATTTCCCAAGTGGGTGTGTGTGCTTGTTTGACAAATGTTTGGGCGCAGGCTGCTCCCAAGGACTTCCTCCCCTACTTTCATCTCCTTCTTCCCACCCCCACCTCCCACCCCGC----------CTTTCTCCTCCCAGGCCCAAAGCAGAGAGCTCTTCTGGAGTCACGGAGTCTCCTTTGAACCGCAAGTGAACTCCAGGGCTGCTCTGGAAACCTAGCTCTGGCTGTTGCCGC-TGCTCCCAACTGCCTCAGGGTGAAGTCTCT--CTCACCTCTGGTCCCCCCAGGGGAGAGCGACCCCGGCTG-CAGTCAG--GCAGGGAGCATCCTAGCTATCTTTCTCCCTGGGTGCTGCTTCCTACCCCCATACTGCTTCATCCCTTACCCCACCCTACACTCCGTTCTGCGGGTA-GGAGCATGGTTCTCATGTGATTTT----CCCCCTTTTCATGGACAGTACCTGCACCTTTAGCAGTTCGGAGCTGGCTTCTGTTTTCCGTTAGTGCTTTGCTGCAGGGACAAATGCATACAAATGCATTTAGGAGCCTACAGGACAAGGCATGGAAAGGTCTCCCCCACCACAGAAACGTAAGTAGCCCACCCGCCGCCCGAGGGGGGAGGAAGGGGCTTTAGACCAAACCCCCTCTCACCACCCACTGAATCCGC-------AGTGGAGCTGGAGATCTGTGCTCCTTGGTACCTTTTGGAGTAGGGAGCCTGCGAGCTGCCGTGGCATCCTCCTCCTCTTGACTTCTCAACTTGTAAAATACCGTGTTTGAAAGGAAGCAAGCTTCTGCCAGCGAGTCTCA----GTTTATGCTAAAGCAATCCTGTGGCTGAGGAGGAAAAGCTTGCTGGCCTGTGTCCCAACATCCCCTCGGCCACTGCCCCAGGCGGTTGCAGAGCCGCTCTGACACCCGCCTGGGCTCTAACTCCAACTATCCTCTCACCCCCTCCCCTTTTCCTCTTTCA--GTTTTGGCTGAAGTCCTACTTCCA------GCTGTCTGGGGCACCCAGCCTGGATGACTGCTAGGACACCAGCAATCCTGTGGATT
s HiC_scaffold_1 131579885 2057 + 233722169 aaaagcaaggtcctgagttcaatttccagtaccagaaaaaaaatttaaataaagagcaTGATCA-----------TTCTGAACTTTA--------TGT-GTGTAATGTGGGATTCTTTCT----ATGTGGAATAGCCATTAAATATGGATGACACACAGAACATACAAGAAAACTTTGGAAAAATGATACTCAGTAATATACAGCAATCATTCATCCAACAGATATGTCAGGTAGTATTTTAggtaataaaaatacagtgatgaCTAAAACAATACATATCCG---GTCACTTGGAATTTTTAGACTTAACAAAGTAAAATTACAACTTCAGATCttctgggggtttttttgtttgtttgtttgttttggtttggttttggttttggtttttgaaaaaaTCACTAGGTAAACTTCTCAGTTACAACAGGGCTGTGGAGAGAAGGACTTGTGCCAAATTGAA-GTTTGTTTCAAATACTGGGGAGCAATTGGAGTTG------GTAAGGCTGTGCTGTGTTAGCAGGCTCATGAATAACAAAGGAGCAT-----TGAGCTTGTAAGAAGATACACAAAACGCCCAAGAAGGCAGGTGAAAGGGTGAATTAGCGGAGAGAAAAATCAGTAGAAGTAGTA----AGAGGGCCAactaaagaaaagagagaaggggaaTAAAGGTAGAAATGAGAGCCGCCACAGGTAATAAGGCGATTTGGCCCTCAAGGTTACCTGCATAGAAAGCAAAAGGTCGAAGAGACAAGGTTTCCTCTAAGCAGAAATTCAGGTGTGGGTGAAGATCGTATAGATAAAGATTG-TGAGTGG-GAGACATGCAGGAAACACGCATG---TGGGGACCTA--AGTGAAGGGGGATGGCACGCGGAA------------------GGTTCGGCGGTGCG--------------------------------GAGTCCAGGGCGCTGC-GGCGCAGCCCGACCC--ACAGGCTGGGGACCCGGCGCTGGCCGGCGCAG------GGTGGGGGA-GGCTGCGGGGCCGAGGGG-AGGTGTGCAC--TGTTGGGTGATGTCATTGCAAGTCAGTGAGCGGTGAAATTTAACACCGGCCGGATTTGCTTGGCTCCTCTTCTTCCAGGCGAGGCAGCCGGCGGCAGTCAACGCCGAGGTCCGCAGTGGCCACTGGCCCCCTCGCCGG-GTCTCGATTTCCGAAGTGGGTGTGTGCGCTTGTTTGACAAACGTTGGGGCGC--GCTGTTTCCAAGAACCCCCGCCCCATCTC----CTCCCGCCTCCTCCCCTCACTTTCCCCGCCACGTTCccccctctttctcctccctggTCCAAAGCTGAGGACTCCTCTGGAGTCACACAGTCGCCTTTGAACCGCAAGTGAACTCGAGGGCTGCGCTCGCAGGC--GCTCT--CCGCGGCCGCAGGCGCCCCGCTGCCTC-GGGCGAAGCCTCCTCCTCGCCCACGCTCCC----GGGGGACGCAGCCCTGCGTGTCCGTTAGCGGCAGCAGGAAGCCTCGCTGTCCTCCCCTTCGGGTGCtatctcctccccc---------tcctcccctccccc------------ttgtGGCGAGTTTGGAGCATggttttcatgtgatttttttcctcctttttcatgGACAGTACCTGCACCCTTAACAGTTGGGAGTTGGCTTCTGTTTTCCGTGAGCGCTTTGCTGCACGGACAAATGCATACAAATGCATTTAGGAGCCCACAGGACAAGGCGTGGAAAGGTCTCCCCCACCGCAAAAACGTAAGTAGCCCACCGGCC-----------------CGGGCGTCGGACCAA--CTCCTTACTCCACCC-CTGCAGCCACCAAGCGGGATGGAGC-GCTGATTTCCGCTCCTTGGCAC--TCTGGCCTTGGGAGCGGGCGAGTAGCCGTGGCATCCTCCTCC---TGTCTTCTCAATTTGTAAAACACTGTGTTTGGAAGGAGAC---CTCTTGCCAGCGGTTCTCAGACGGCTTATTCGAAAGCGACCCTGCTGCTTGCGAGAAAAAGCTGACCGCCAGGCTTCCCGAAGTCCTCGCCGCCGCT--------CG-------------------------CTGGGCTCCATCGCC------CCCGCCCCCTCCTACCCCTCTGCTCCCGCAGGGTCCCGGCTGTCGTTTTGCTTTCCCGCGGTGCTCCTCACGACGTCCACCCTG--CGGCTGCTAGGTCGCTAGCCGTCCCCTAGGCT

a score=35711
s chr3           145294677 3465 + 160039680 TGGCCCCTGTCTTGTATGGTTTGCAAGGCCCTTCTAGAGGGTCCCAGGA-----------TATGTTCTTGGGCAGTTTGGAGTTTGTA--TTGGGTTCAGATGATTGATGTAGGGGATGCTGGTAGGACCCAGAGAATAAACAGGATTGTACACACGTTGGTGGAACTTCTGGAGAAAATGACACCTGGTGGATTGGGGCAGTAAAGGTTTATGGAAAGGTGCTGAAGTGGGCAGCAGGTCCTAGATGAAGTTTCATCCTCCTTGGTCTCCCTGAGGGCACCTCCAGGTCCGGGACCAGGAGCCTGGCCCATCATGAATATCTCACGATGCCAAACTTGTTCCATAACAGGAACCAGTGGGTATGGGCTGCAGATAATTAAGGGTAACTCCTCATTAAACCAGATTGCAACAGGTCCTCACAGCTCCAACCACAAACATGCAAAGTGGAGCAAAGCTAGGGGTTGGATTGGGAAACTTGTCCCTAGGAAAAACTATCATAAAGAATTTAGATgctgggcagtggtggtgcacacctttaatcccagcacttgggaggcagaggcaggtggatttctgagtttgaggccagcctggtctacagagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaccaacgaaacaaacaaacaaacaaacaaaAAAGAATTTAGAGTTCTTTCAGTTG-AAAACACATCACCAGTACTTGGGAAATGGGACAGGGCTTAGGAGAGGCTTCT-ATTCGCTGATGCTAATTATGTCAGTCC--TGAGTTAATCTTTACGGACCCTAATGAAGTGGCTGGGGCTTCCATTGAAGCCATCT--TTTTGTGGCGA-TGGCCTGGAA-------------------------GTTCCGAT-AGCCACCTAAACATTTTTATTGTTTAAAATCGGATCTATACAGACATTATCTTTCCCGGGGTTGTCCTTAAAGTAGATTACTTGATGTGACTTTGTAGAATTAGTAAAAGAAATCTGAAA-----------GGTGTTAGATGCACCAGCTTAGCATGCTAgggtctgggagt------ggagcttagttattgaactgcttgtctagcaggcatggaactgagggttcacatcatccgctgcataggcctatggtggatgttctggtgcagctctgacttcctagtgtcaggaggaaatggcaggaggaccagaggtcccaagtcaccttcactagagaggatccaggccagctggcctaagagagaccttgtctcaaaaacaaTGACCAAAGCAACAAACAAAACTAGAGACAAGTCTCCTGGGCTGGTTACTATGGTAATGTTCGTCCAGGCTGGTGTCGAATACGATTTTTCTAAGTTACTTCGTTATTTGAGTATTCAAATAAATGCTTAAAATAAATGGGTATGTTAGG---GAGAAGTATAATTTGT-------AAGTTTGAGGGCTGTTTAGACATTCTGTTTGGTAGTCTGTAAAGTCACATGAGAAAGGT---TTCATTAAATGACCTAGACAAGCAGTGCTAGTTTCTTTGTGAACTGTATCTGGCAACTATATCCCATATTAGAATGCATACCTCTGGGTGAGAGAAGAAATTAGAACCATTTAGTTTTTATCCTACAAAAGCTTACCACTATTCTGCCATTCATTTATTTATCATATattcatttcttcagcaaatatctactgaacatcaactgtggagagcccaac------ctaggcagtaggtaa-acaa-tagttgaagaagggagaGGACccccactccaccccaccccaccccacccccactccgccccaccccaccccaccccCACCACCGCACACACAATGTGCAGGGTTCAGTCAGGAGAAAAGGAAACCTCTCTAAACAACATGAGAAAAGGCTGTGCCCAGGAAGGATTTCTGGAAATCCTGAAgaggtgggggatgatgagttgggaaagagagaggagaagggggagggggaggcagagaggaggaggtagggtgggacaaacaaggcaggggatggggaggagAGGCAAAATGGTTCTAAGCAGAAGGAAGGTTCAACTAAAGAAAACGTAGA-----CATAGAC----CCAAGCAGAAAAGG--GATGGGACATTCAATGTCCCTGAAGGTTTGAGA----GAAATAAAGTTAGTTTGAGCACCGTTTCCAGGAAGAAGGAACTG-----GAACTGGGGGTGCAGAGAGAAACAGAAGAGAATGAAATGCCTTCAGACCTTGTAAGCTGGACCACT-----TCCGTAATCTCAGGATCAGGGTACAGATAGAAG--TTTGGCAGAGGT-----TTGGTAGGAATGAAGGACCATCTGTTGGTCTTACTGGCTAAAGATAGA--------TTCATTTATTCAAGAATCTTTAGCACTAGCACGTGACAGTTTAACAGCATCCTTGGTGCTACAAGATGGCTAGGTCCATTTTTCTGCCCTTTTACCACATCCTTGGTGCTACAAGATGGCAGGGTCTGTTTTTCTGCCCTTTTACTGACATGCCTCCTGGTTCTTTGAT-GCCTGAAGTCCTTAATCATCCGTCTCTCGGCTCGTTACTCAGGAGCTGCTCAGGCACCGAGAACGGGATATGTGCACAAGCCCTC--------------------------------CATACTGAGTTTGATTGACAGTCTGAGATATTTCACTGTGCATAAGCACTGACAATAGTTTTCCCATGGAATCAACCAATTTTATTCTCATTGCTGGGGTGAAAGATTTCCCTCAGTTATTCTGAGAAAG----ACAGATTTTTTTTTTAACTATTTCTGGATCTTAGCTGTT---AGCCAAACACAGAATCTATAAACCTGTCAGGGCATAGA-CATTTTTGGCATAAAAACCAAGGGTGCGAGAATCTGTTGAAACGCTAGATGTGTGTTACATGTGTGTTTCTCGCATTACTTCACACGCCTCTGCCGGTTTAAGAGAAAGCCACCAACTCATCAAAAAGCTTGCTATTCATAATAGTTCACATGTCTTTCTTGCTATTGTAAACTTCATCTTTGTAGGGATGAATAGCGGTAGCCTGAAGACACGAGTTGTA-AATCGTAAGGATCTCATGAGTACCCTAAAG--AAAGACTGTTGGCACTGTCCCAAAAGAACCTGGACTTTTATGACAAAAAGAACGTTGGATAGCTCTGTAAGCCGCATCTAGGGGAGACTCCTGGGAAAGGGATTAGCTCCTCAGATGTTCTGAGGACGATCTTTGGATGTCTGTCTATTCCCCATCTAAATTTAGGTCTTCGCCCTGGCTAGTCTGGTTGGTTATGTTTTGGGTGTGGCTCATGTTAAACTGGACACTGGAGGTGGGGCTAGCAGGC----TGAACCCAGACCCTTTCAAGCGTTATTGGACATCTT------CTTATATCGTGGGTTGCCATTTTTGAATCTTTATTAACTTTTATTAACTATGATATTGACTTATTTTAGATTTACTCAGTTTTACTAAATGTCTGAGCATGTTGATGTCTGTCACGTACAGAAATTAATCTTATACAATGGTACTCTAACCAT-TTTGTACATTTGGCCCATCTGGCAAATATTTGAAATTACA
s HiC_scaffold_1 131582961 2917 + 233722169 TGGCTTCTGTCTTGTCTGGTTTACACTTCCCTTCCAGACGCTCCCAGAAAAGGCCTTGCATAAATTCTTGGGCAGTTTGGGGTTTGTAAATTGGGTCCAGATGATGG---TGGGGGGCG---GGGGAGCAGAGAAACCAGATAGAACCGATCACA--GCGGAGGAACTTCC-------ATCTCACCGCATGGAT--GGGAAAATAAGTGTTGTGGAGCGAATCT----TGGCCGACAGGGCGTCAGCGAGGG-----CCTTTGCAGCCT-----GTGATAGCTCCAGATCTGAGATC-----------CAATC--------------------------TTCCCTTACAGAAGCCAGTGGGGATGG-CTACTA-----TAAGGGCAGCTCATAATTACACCACGTTGTAGAA---TTTCACAGCTCCTACCACACACATGCAACACAGA--AGAGGTAGTGACTGGACAGGGAAAAT-GTTTCTAGAAAAAA-----------------------------------------------------------------------------------------------------------------------ACAGCCaa--------------------ctttcaaaaa------attgaaata-------------------------------tttcttcagttttaaaaaatgccacCAACCCTTGGGAAAAGGGGAAGGACTTGGAAGAGGCAGCTGATTAGTTGATGATAAT---GTCAGCCCACTGAATTAAACCTTAAGAGTCCTAATGAAAACcttgaagttttcattt--tccaCCAGATTTTGTGGTGAGCTGTTTGCAAAAGCAGGAGcagctttttaaaatcagttctgATTAGTCACCCaggaacatttatattttaaaactggatTCTTATAAACGTTTTCTTTGACAGGGCTG-CTTTTAAGTAGGTTGACTAATGTGACt----ggatttaataaaaaaaaattaaaaccccaAAAGCCACTATTAGATATATTCATATAACATAC----ATCAGAAAGTACCCCAGAAGCTT-----------------TCTATAAGA--------TGAGGG------------------------------------------------------------------GCaaaaaggggaaggggaggagaag------------------gaagagg--------cagTAGTTTTAGTATAAACCT-----------------------------------------------CTCCTAG------------------------------TTGCacagtattctatttttaaaagttacatagttatctttgttttcaagt----gtttaaaataaactaatgtttcaggaaaggaaaatataatttatgtaaaggaattttgagttttgtttagTCATTTTGCTTGGAAATCTATAAAGctgaacaagaaagagaaatttatt----------------------taatttcctt----aataTGCCTTACAACTG----CTATTTTAGAATTTGTATCTCTAG-TGGGAGATGAAATAAAgaccatttcattttatttttatagaagcCTA------------------------------ATATtc---tattcaataaatgtttattgagctTCA---GTGATATGCCCAGCAGAGCTCTAGACAGTAAGAGATACAAAGAGTGTGCAAAATGACACTACTGCCAC-------------------CTTCCACTTGTACCCAGCCTAA---------------GGACATACAACATG--------AATAAGTATAA-----------------CAAAATGAGATAAAGATATAAACTGGATGGGCACCCAACAGCCCTG---------GGGATGTGGATTTATCTAACAGTGGTGAG----------------------------GGCAGGAAAGTACAA-----------TACTAGAAGGAGAGGCAa-------ctaaaggaaacaaaagatagACTGAAACCTATTCAGAAAGGTCATAAACTTTTCTAAACAGGGAACACTGATCAGAAGCAAGACAGCCCAGTGCGTTTGAGGCCCTGAAAGAAAGTTGGTTGGAGCGCACATTCTAG--AGAAGTGGCTGCCAGAGAACAGGAAG--CAGCGAGTAAAAGATGTAACTCTCTTGGCTAAACAAATGGAGGGTAGGAGACCTGTCTTTTCTTGAGTTTGTTATCAGTATGCAGATAGAAGATGTTAGAGAAGGTATATATTTGTTGAAACTCAAGACCACCTGACAGTCTTACTGACCTAAAATAGActgattcattcactcatttaaaaatatgtagcaTCAGTGTGTGCCAAG--------AACTTTGCT-----AGACTAGCAAGAATCAGTTTAATAATCT----CTGTGGTCTTATAGTACCAGGAAGGACTAATTTAGgtgtattttcttctattgactggactttaggctctttaATTAACTGAAATCCTGAGGAATTTGTCGC----CTTGTATCTCATGAACTGTCTTAACAT-----GTGGAATGTAACCAAAGGCTCTTACATGCTTCACATCCAGTTAGTTATATTGCTACCTATTGAACTGAATTGACAGTCTGAGAAATGT-GTCATATAAAAG---TGACAGTGCTTTACTCCTTGAATTATTCAACTGTATTCCTATTGTTGTGATGAAACTTTGCCTGC--TCATTTTGGAAATGGAGAACAGAAATTT-----GATTGTTTCTACATCTTGGCTGTttctaaagaaaagcaaaatctgTAATGCTGTCACAACTTAGAGAAGTTTTGGCATATGAAACAGTACTGT-AGAATTTGTTGAAATTATTGATGTGTATCATATGGATATTGCTCACATTAATTCATATCTTTCAGTTGATCTAAAAGAAAGCCACAAACTTACTAAAAA-----TTCTCTGTAATATTTTACAAGTGCTTCTTACTATTAGAAAGTGGATCTATGTAGGAATGAGTATCAGTAGCCCAAAGATATGTATATTATAATTCTAGGGATCTCAAGGCTATCCTAAAGAAAAAGATCACTGTTATTCCTCTAAAGTAAGCTGGGTCATTCAGATAAAGACTAATTTGAGCATCTCTTTAAGAGTAATCTAGAGAAGACATGTGGG-ATGGTTTTGGTATCTTAAGTGTTCTAAGTATGATCTTCAGTTATGTGTCT-TGCTAGGTCT---CTTAGATTTTTATCATCTCTTG---ATCTAGTTATATTTGGACTGTGGTTGATGTCAAACTAAAAA-------TGTGGTCAACAGGCCAGATATATGCAGAGTGTTTCATATTTTGTGAGATATCCTTGGATATCAATATCATAGGTT---ATGTTTTA---------AACCTTTGTTAAATGttatattgatt--tttaagcaCTTGTCTAATTTGTTAAATGTCTGAGTATATTTACTTCTGTTATATACAGACATCATTTTAATACAATGTTCCTTCAATCTTGTTTGCACCTTAGAATGACATGGTAA--GTTTAAAAATGCA

a score=6681
s chr3           145298766 145 + 160039680 TTACACGATTTGTCAGTTGGGAATGTCTAACAGTTGCT---------------TATTCCTCCCTTAGGAAACTGTTTCTTCGCTTTATTGTACTATGTGTGGTGTGGATTTCTGTTCATGCACAGGGACAAGGTAAGTGGAACTATCTCGTTACTTGTTT
s HiC_scaffold_1 131587654 159 + 233722169 TTGTATGGTTTAGAGGTTGTAAATGTccaacaatttttgttttgttttgttttcttttctttcttaggaAACTACTTCCTCATTTCATTGTGCTATGTATGGCTTGGATTACTGTTCATGCACAAGAACAAGGTAAG-AAAATTACCTTGttaattattt

a score=28221
s chr3           145299434 822 + 160039680 ATTTCTGCTTGCAACAGTCATAGCCCACTCCTTCCAAGGCATCATAACCTGAAACTCAGCATTAAACAATAAT-AAAAGGTTAGAGCCAGTTTCAGGAAGATACAGGGTACAAGGAAAAAAATCAATTTGGGGGTAAATATGACCTTTAAGAAATTACTCAGATCTTCCGTCTGAGAAATTGCTCACATTTTTAGGCAAAATCTCTGTAAAAGGGAAGTTTTGTATAGTGAAAAGGCTTTGCTTGTGTCTTCATTTCAAGTGGGAGTTCTTGGGGGTGGCAGACTGTAACTGAATAACCTTTGCCCTTCTTGAAACAACACATGCGTGTAATTCATTTTCCCTCTGGATTTGCATCATTAAGAAACAAAATTTGCATATTTGAGGGCTCAGAACATTATTTAATTCATGCAGGGTGGTCTAGAAAA-----TAGTGTTTTGGTTTG-------------CTCTGCTAGCTTGTT--GGATTCAGAAATCTTTGTATATTCATTTTTTTATTCATTTATTAAACAACGTTTTTAAAGTGTCTATTTCCCAAGAAATATCTTA-----CTATCCAATGACTGAAGTATGAATACAAAAATATCTCTGACTTCAAAGTGAGAAAAAAAGTGGTCTTGTCAAAGATTCAAAA-------ACTTTCAAAGAGAAACTTTAGGTAGCATGCTGGATTCAAGACACCAGCAGTGTGATCCCAAGGTTCGCTTCTCTCGCACTTTTGTGTAGCAGGACTCCACGCAGCTGCCCA------TATTGTAGTACAATCAGCTTTTCATTGTCCACA-TAAACTCAGCAAGCCACTTGC-ACCTGAGTCCATCAACCCAGTAATGATATCAAGAA
s HiC_scaffold_1 131587823 813 + 233722169 atttctgctttgGACAGCAAAATTATAGACCTTTTAAATTATCATAACCTTAAGTTCAACATTaagcaataattaaaatattctactCAGCATAATGAGAATGTAAGG-ATAAGGAAAT---CCATTTTGGAGGGAAATATGACCTTTGAGAAATTACTCAGATCTTCCATCTGTCAAATTGCTTACATTTTTAAGCAAACTCTGTATAAAAGGGAAGTTTTGTACAGTAAAAAGGCTTTGCTTGTGACTTCATTTTAAGTAGGAGTTCTTGGGGGTGGCAGACTGTGACTGAATTACCTTTGCACTTCTTGAAACAACACAAGTATATAATAAATGTTCCATCTAGATTTACatcattaagaaacaaaatttgcATGTTAGTGGGCTTAGGATATTATTTAATTCA-ACAAACAAGTTTAAAAAGTAGTTTAGTGTTGtgttttgcctcttgctgttccTCTGGTAAACTGATAGGGTTTCAGGAGAGTATGGATATCC--TAATTggttcatttattaaaaagcattt---aagtatttattttccaACTAATATTCTAAATCGCTAttc----atttaaatacaaatatgAGAATG---------TGAAAGTGAT--AAAAAGTCCTATTGTCAAaggttgaaaataaaatgaaagtcaaagagaaa-----------------aattCCAGGACTGAGCTGCACG-TACAGACATTAGCATGCATTATACTTATGGGC------ATTGTACGTGGGTgccaaattattcatttttagagAAGCAGTTTTTCATT-TCAGCAGTCAACTCAGTGATCCACTTGCAAATTTGGTCAATTGATCACACaacaatatagaaaa

a score=19074
s chr3           145307200 600 + 160039680 ATAGATCTGT-TGGCTGCC-ATGTGCTTGTGTGATTATTCACCAACAGAGATACCAAAGTAGGAGAGATGAAGTTATGGGATAATATATTGAGTTAGAACTGCTTTGGGGACATGTAATTTCTTCTGGATAAATCCAGCAGACAGTTGGCTGTGCAAAGCC--AGAAGCGATGTCTATGAGTCAGCATGTGTGGTTATTGCAGCTATGGTTTGGATGACGTCATTAGGCCTGCTGTTTACAGTAAAGAGAGCATGGCTGTTGTCTTGGAGACACCACCATTTATTCTACATTTAAGGAGCAGATAGAGGAAGGGGATGCAGTCTGTTCTGCTTTTAGGTAAAGTGAAATAAATTAGTAACAGTCCCTGAGGTACGGGATTGACTCTTAGAGA----CTGCATTCAAGAGACATctctgcactccctagttgtgcggtcttgg--aaatagaatttattcttg-----acctttcataactgtaagataggg--tgatagtagtatct-gcttatagggtcat--gagacttatg----acaatatggtaaagttcatagacagggactaggtacacagaaaggatttagtgaatgtCACCAGT------GCTTATTAAGAAATCAAGGCA
s HiC_scaffold_1 131594746 600 + 233722169 ATAGATTTTTCTGGTTACTTGTGTGGTGCTGGAATCCTTTGCTGAGAAGAGCACTGTAGTAAGAAAAACAGGTTTAGAGAA----------AGTTAGAAGTTCCTCATG--CATTTAACCTCTAGTGGATAAATTCAATAGGCAATTTGATA-GAAAAGCCCCAGAAAAGAGGTTTGTGAGTCAGCATATGTGGTTGTTACAGCTATGGTTTGGATGAAGTCATTAGGCCTGGTGTTTACAGTAAAAAGAGCA-AGCTGTTGTCTTGGTGACACTACAGTTTATcctacatttaaaaagcaaat-gaggaGGGAGACACAATCAATCCCACTGTTAGGTGACAT---ATGCATTC-TAAAAGTCACAGGGTTGAGAGACTGATTCTTAGAGAATGCCTGCATTCAAATGCTGCTTCTGCATTTCCTAGTTGGGTGACCTTGGTTTAATA------ATTCTTGGATTTACTTTTCTTAACTGTCAGATGAGGATTACCAATAGTATGTAGCTAAAAGGGCCGTGGGAGAATTATGTGATTTAACACAGAAAACTTCTTAGACTGGTGCT-----TATAGAAAGAATTTAATAAATGTTACCGCTattctcattctttaaaaatttaaagca

a score=86632
s chr3           145313691 2480 + 160039680 tctgtttgtacctgtgtatgtatatgtgtgtgtg-----------cgcacatgtgtatatgtgtgtatacatt----------------------atgtgtgtgc-------atgtgcatc----tttgtgtatatgtgtatgtgtgtgtgcacacacgtgtccatacttgcttCATTCACATTATTGACAATCATGCCTCTCTCACTAGCTTTTGTTACCTAGAAATTGCTCATGGGTAGAACATGCTTATATC---AATTG-----------AAAAGGTTTGTTTTTATACTCAATTATCTGTATGAATGCATAACAGTAAGGTCCTTCCTACCTTTCTCTCTTTTCATTCCCAGGCATAGATATTCTTCAGCAACTAGGCCTTGGAGGCAGAGATGTAAGATACACGTCATCGGTGACAGCTGTGCCGTCATCGTCATGGTCCACACCATTACCTCAGGGGGTCCATTTAACAGACTTTGGTGTCATCTTAACAGATAATGCCTATATTGAGTCACCTCTCGTGAACATTTTACCCATTAGCCTAAGACAGCCACTGACAGTATTGATTGGGTTGCAATCATTCAAAGTGAACAATGCATTTCTCTTCAGCATTCGGAATAACAACAGACTGCAGTTTGGCGTACAGCTACTACCTAAGAAACTAATAGTTCATGTCGGAGGAAAGCAGACAGTAACCTTCAACTACAGTGCCCATGATGAGCGATGGCACTCATTCGCCATCACTGTTGACCACCATGTCATCTCCATGTTTGTTGAGTGTGGAAAGAGACATTTTAGTGGAGAGACGACTTCAGACGTTCAGACCTTTGACCCTCACAGTGTGTTTACCTTGGGAAGTATAAATAACAGCTCTGCCCACTTTGAAGGAACAGTGTGCCAGTTGGAGATCATGCCTTCCACAGCGGCATCTGCGGAGTATTGCAGACACCTGAAACAGCAGTGCCTCAGAGCAGACGCATCCCAAGCTCAAAGAAACCTTCCTCACACGGCAGGAATGCCCACCAGACACCCTGCGCACACTCCATTACCCAGAGGATTTCCTGGAACAGATTCACCACAGAAGAGATTCACAGAGCAGGATTCCTTGCCAAAAGGATTTGATGGAACAGAACTGCCACGGGAGACGTTCGCT---GATGGCAAAAGCATTCCAAACAACAGAAGTAATGGTTCTGCCACGGTACATGAAAGCCAAGAGCACCAGACACCAAGGGCTCAGTTAACTTCTTTCCATTCAGGAAACATCTCCGCTGTGACTCTCCCAAACTACAGAATTCAGGCTAAAGAAATCACCACCAAGGAA------GAAACAAATTTAACCCTGTCAGTGGCCCATCACCTCCCTAGTGAGGCAAGAATGAATGAAGAGGGGAGAATTAACCCTCTCTTCGCTGGATTCGACAACATCACCCAACACGAGGAGGCAGCTGGCCTGCCCCTGCCTAAGAAAGCATCATCCGGCTTTGCACACACAAATCAAGACACCATGAAGAACCTCGAGAAGGCTCTCACGGCAAATCTATACACCAATGAGCTCATAGAAATGGAACGGATCTTAAACAGCACCTTGTATAGAGTTATGTACGGGCCCTCGGTGGATAACCACCTTGAACTAAGGAAGGAAGGTGAATTTTACCCTGATGCCACGAATCCCATCGAAGGCAGCTATGAGCCCCAGGCTTATGATTATTACTCTTATGAGGATTACAACGCAGTGCTTGACATGGAGTACCTGAGAGGGCCGAAGGGAGACCCGGGACCTCCTGTAAGTTGGATTTCTCTTTTTAAAAACATGTTGATGCACTAACTTACCAT----GTATTTCAAAGAGGTATCT--------------GGACCATACAACATAGGATAGACTGGGTCTGCTTAAGAAATGTACCCTGCCACATCGGATGA------------------CATCAGCCAGAACATAGCCCTGCCTCAAAT----------------------------TACACTTTTGTTTTTGATTGGTAGGCTGAGAGTTACCCAATTCTGGGTAAAATGGTGGGGGAAACTATATGGTTTTCTAATTCAATTGAGATCCAACCAGGAATTTAACTGCAGAGTATAGATTTATGTATATTTTTAAAAAAAACAAAAATGCACACTCAATGCCTAGTTATGTTAAAAGGGTATATATAAA-----TGTTAGACTAAGGAAA---ATATAGTGAATATAACAATTAAGTATTCCATTATCAAAATCACATCAAATGGATCAGGAAAGTGTAATACTTGATTTTAGATAGACGTTATTTTGTAGACAACTGCTG---GGGAAAAACCACACCC-----TTATCATTCTCAGTGAAATGTTTTCATTTCCATGGCAAATAACGTACTTAATCATCTCTGTAATAATGTAGCCAACCTATAAGT--GGATTAATATAAACTCCACCTACCTCATATAAAAATACTCAGTTAACCAGCCTACTCTGGGAATAAAAAGATAGCCTATTTAGTAGAGAA---------TC--CCAAGTCA---ATCTAATAATATAAAAACAAGCTTGTGAAACATTGGTCTAAACTTTTCAGTTCTAAATTTCCTCCATTATGCAGGT
s HiC_scaffold_1 131600758 2524 + 233722169 TCTGTTTGTTCACTtgaacatatatgtatgtgtgtatataaacaacatatatgaatatatatgagtAACAAATGATCAtagtgaaatgtttaaaaatgagtgagctaaaataatttgaattgaATTTTGGGTTAAAAGATACTGCTGTGTAGAT-CATGTGTATA------CTTTTTTGAAACTGTTGAATGTAAAATCT-TCTCGCTATCTGTTGTGACTTGAAAATT----ATTGATAGAACATGCTTACTTTGGAAATTACTGTTTATACAAGGAATGTTGTTCTTATACTCAA------ATATGAAAGCGTAAGAATaagattctttctctctctttcttttttaatttctaggcATAGATATTCTTCATCAACTAGGCCTTGGAGGCAAAGATGTAAGACACCCATCACCAGTGACTGCTGAACCATCATCATC------TACACCGTTACCTCAGGGCTTCTATTTAACAGAATCAggcattgttttaaaaaaggatgCTTATATTGAGTCACCTCTCATGAAAATTTTACCAGTCAACTTAACACAGCCATTTACACTATTAATTGCATTACAGTCACATAAAGTGAATAATGCATTTTTCTTCactgttagaaataaaaatagactgCAATTAGGGATACAGTTGCTACCTAAAAAGTTAATGGTACACATTGGAGGGAAGCAGTCTGTTTTTTTCAACTACGGTGTTCATGATGAACAGTGGCACTCTTTTGCCATTACTATTGGAAACCGAGTTGTCTCAATGTTTATTGAGTGTGGAAAGAGATATTTTAGCAGAGAGACTGTTTCAGAAGTTCAGACATTTGATTCTAGCAGTGTGTTTACCTTAGGAAGTATGCATAACAATTCTGTGCATTTTGAAGGAATAGTGTGTCAGCTGGATATTATTCCTTCTGCAGAAGCATCTGCAGACTACTGCAGATATGTCAAACAGCAGTGTCGCCAAGGGGTTGAATATCAATCTGAAACAAATCTTCCTCTCACAA---------CTATCA------------------------------------------------CACCGCTTAAAAGACT---GGAACACTCTTCCCTGTCCCCACGATTTGGTGAAAAAGAATTATCAGAGAATACATTTACCGAAGAAGGCAAAAACATCCCAAATATCGTAAATAATGGTTCTGTAGCAGAGCATAAAAAACAAGAACACCAGACATTAAGACCTCAGTTAACTTTTCTTCACTCAGGAAATGCCTCTGCTCTGGATCTTAAGAATTATGGGACTCATCACAAAGAAACCGTTACTGCAGAACCTAGTGAGACACATTTAAACTCGCCAATGATCCATCCTGGCCTTGAGGAGGCAAGAATGAATATGGAAGATAAATTTAGTTCTCTGCTAAACCTATTCAACAATATCACTCAACCTGATACAATAGCTAGTCGGTCCCTGTTTAAGGAGATGTCATCTTTTCTTCCAtatacaaaacaagataaagtTACTAATCTCAAGAAGGCCATCATGGCAAATCTGCACACTAATGAACTCATGGAAATGGAACAGATTTTAAATACCACCTTGTATAGAGTGACAGATGGGCCGTCTGTGGATAATCACCTGATAT--ACGAGAAAAGGTG-ATTTATTCCTGATGCTACTTATCTCatcaaaaatatcaatgaaactgagctttatgattattattattatgaggATCTTAATACAGTGCTTGAAATGGAGTATCTGAGAGGGCCAAAAGGGGACACTGGACCTCCCGTaagttg------ttgtttttaaaatgtttgaatgaACTAACtatacattaaaatgttttaatgcaCTAATTACACATTTCATCTCAGACTGAACAATGTAGAATCAATCAGATGTGTCGTAGAAATGTATCCTGACTCAGCAATTGAATTTTAGTTGCAAAGATGCACCTACCA-AATGCAGTTCTGGCTCAAatatcatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaaattggCAGCCTGAGAA--AGTTAATTCTGGGTAAAGTAGT-GGGTAATCTATATGTTTTTCTTGTTCATCTGAAATCTAACCAGGAAATTAACTGCTAAGTACAGAtcagttttctttattaaaaaaacca------CAATCTTATTATAtagtcacatttaaaa---atatataaaagttgtGATACATTAAGGAAAGACACATTATATGTATACCAAT----TATTCTTTCAACAACATAGCATCAAGTGGATTAGCACACTATAATACTT-ATATTACATAGATATTATTTTATAGTCAATTACTAACTGACAAAAATAACCCCTTGGTATTATCAtt-tgaatgaaatattttcattctcatgAAAAGAAACATGTATCATCATATCATTAATGATGTAATCAATTTACATTTAAGGATTGATAAAGTCTCATCCTATTTAATACAAATAGAC------AGTCAACTTACTCTTGGGGAAAAAGGTCAGGCt-ctcaatggaaaaaaaaaaaactcaaccaaGCTACTTATTTGTTAACATATAAACAAAACTGTGAGATGGTGCAATGAATTTTTCATCTCTGAATTGTTTTTGTTGTGCAAAT

a score=45628
s chr3           145320031 3511 + 160039680 TTTGTAAGTCATTTATCTTTATTATTGAGCTCCTGGTATGTCACATTTGGTATAAGACAGCTCTATTA-TGCCTTTCTAAGAAGCATGTCCTTGGAACGGGTAACATTGTAGCATGCTATTCAGGTCCTTGCTATAATTATTTTAAAAGAACAAAA-----TGGTTAGTGCTTTCCTTTTTCCAAGTTAAAGTTCTCTTTTGAAGTGTGTTAaaaaaaacaaaacaaacaaacaaacaaaggaataaaaaaccaaCTGTATTTGAGCTCCAG-CCCTAAGTTGAATTTCTCCTTCCATAATAAAAATAAATTTAGGTAAAAAAATCACCCAGAGAACTGCTAGTTATGCTCTGTATAAAAGCCAGATAGAATGCTGTTACTATAAGCCCTGGACTTCCCATTGCCATTACTGGCCTGATTAAAGAGGAGACAAGGTAGAGTTTCACCTTGGCCATGCTGATTTGGGTGAGGGGTTAACGTTGCTTTAAAATCGTTGTCGGCTGGGAACAGGGAATGGGGAGAGAGAGGGGAAAGAGACAAAAGGAGCTATCATGGAGTAGAAATCTGATAAAGATTTGTGAGGAAAGGCATGCTTACTATTTATCCTGCCTAATGTCTTGACGTTTGCTTCCTAAGGGTCCCCCTGGTCCGATGGGTATCCCAGGTCCGTCAGGCAAGAGAGGCCCGCGGGTGAGTAGATGGCCTTCATTCCATGCTGTCTG-GTAAATGTGTAACATTCCAGGGTAGTTTCACCCCTAGTGCTGGACAGGGTGTGCATCCTCTGGAAAGCTGC----GTCTTTCCACTTAGCT---CCTCCGC-----------------------TGCAGCCTTCTTTA----------------CAGGCAAAGAACTCTCTGGGAAAATGTCCTGGGAATAGAATCAAACTTAGAGAGTCGTGGCTGCTCTGCGGGCTTCTCAAA---TCCTCCTTAGTTACAGAGCAGCGATACCAGGGCTCTAAGATGAGCTTTGTTCGGGAAATAAAGAAGATCAGACTTCCTC-ACATAGTGCATTCCTGGACTGCAGAGGGGGAAATACTGGAGCCACCGAC-GGAAGGGAAAGAACTGCCCCAGGG--------------AGCATCAGCAGCAGTTCCTCACAT--AAAAGATCCCATAAAAGATTTATTGCACTGCTAGAATTAGTTTCCTCCAATCCTAGAGA-AATAGATGGAGACTTTTGCTAAAGAAAGTCTGTCTTCAATAAACTAGAAAAAGAATCGTGGGCCATGAAGACAGATGCAAATGGGTTTAATGTAACTGACTTTCTTTGCACCCCCATTTATAATGTACTAAGAATATAGAGCCAAGTTGATGTAAAATATTACTTTCCACTCTCTAGATTCACACCAAATGATTATGCTCTTGAAGGCTAAGGCGAAGGCCATCGTGGTGTAGCTGCTTTTTGGCATTGAAACTCTGAAACTCTGGAGTTGGTGGCCTATCAGGccctcctgcatcccttccctcagcccctccctcagccccttctcatcccctccccatcccctccctcatctgcctcatgccctccctcatgacccccctcatcccctccctatttcctccctcatccccttctcatccactccccatctcctccctatcccctccttcatccccctcatcccctccctcatgccttccctcatttcctccctcatcccctccctcatcccctccctcttcccctccAGTCTTTGCCTATACCCTGCCCTCCAGCACA-------TCAGCCTGTCACATCATCCCTCCACCTTCTGTGAGGAGACATTGGAACCATTGTTTCTGTTGCAGTCTTCTCTGTGCTGATTCCATCCCCTCTTCACCCTGAGGCTGTTAATCCCAGTAAGGTGACTCAGGATACATGGTCTTCTCTAGTGCCCAGGGCCCCCTATTTGCCCAACCTGCCCCCT-GTAAGGAGAGGACGGTCTG---CTTCATGAGACTACTTATTTCAGGTGCATTCCTAACTTCATGTCCTCTGGTCAGTTCTCTACCAGGAAAGTGGCAGCTTTGCAAATTCT-CTCTCCCTAAATTTAATCCTGTCTGTCCACAACCAACACATCATTTCTCTTTGAAAAAAAAATCCCACACTTTAATTGGTACAAGTTTCTCCTAAAGCCATTGTGTTGGCTCATGGCTGCACTGCTGTG-TTTGTGAAATA--GGATTAAACCCATTACCC------------TGGAGTCTACAGCAACCATTCAT----------------------------TCATTAATCTCTGT---------CTCCTT----------TACTTTCTTAAGATTAC------AACGCCATGGACTGTAGTATTTTCTCCTTAGTTTTATTCCTATTAGACATATCTTCAATGTCATCACTGAATTCCCTAGAACAATTTTCTCCTGAG----------------------------GAGACAAGCAATGCTTAC-TCTGTGTTGCATGTTAAGGT----GTGTGCCTAGAGA----------------GCACAGAAGTGAGAGTGTA---AAGACCCCCA---------GGGACCTGCAGACCTGGAA-GCTTTCCGAAGACCA------------TGTATTCGCTGTTTCTGTGAACTTAATCTTTCCCCTTTGTGGGTAAGAATAAAGTAGCTGTCTCATGAGGTTGTTGCATGAGTCAGTAATGAGAAAGATCAAGCATAAGCATAGTTCAAGGGGCA--AACAAGCTTCCCAGGGGATAGAG-------------TCAGAT--GATGATAATTAGCAGTTCTACAGTACAAACTGACAAATGT---CCAAGTGGCTGATGGGATACCGTATG--AAATACTAGACTAGTAAGAT--AAAGAGCATCTTTTCAAAGACATTGCCATTCTGAAACTAAATAGCACA--TCATGAGGCAGGTGAAACAACACTACCATGCTTACACACTGGGTTAGAACAGTGTGGGGTGCCTGACAGCAGCACGC------------TATGAATCTCACATACAATAGTTTCAACAAAA-TTGTCAGGAGAGAGATGATT-CTTCATGAAAATGAGTCCAAGGTTTTAAAAGGAGACAGGA---CAAAGCAGGTTTGAGGAATGACTGGGAAAGATGTAGCAGAGTCAAGGAA-----------------------TTATCCCATATGCAAATCTTGTCTGCAGAAAGGGATGCAGAAATTGAGGAGTGCAGAAACCAAACTATCACACATTGTTAAGCTTGTGACTGCACAGCCTAGA-TGGGACAGTAAGCTGTGTGCTGGGGACA-----GAAGTGGTGAGTAAT---GCCACATCTCCCGACAATGTATGATGTAAAGGATGGATGGAATCTGCCATTTTGCTGTCTGGATAACATAGCCAGTCTTTACAAGACTAGAGGGTCAAAGGTGGAAGAATGAATAACTTTGAAAATATAGTTTTTATTTTCAATAATCTATTTTGATTAGCTTATATTATATAATAGTTGTATGAATGTGAAAAGAAATCC----TGTTATT-----TATATCTGTCCTAAGAATAATGAGACAGTCTCATTATTTGCAGGGTATTCCAGGACCACATGGAAATCCCGGGTTGCCTGGACTGCCAGGTCCAAAGGTAAGTAAATTCTAATGAGCAGGGCCTCATTTTCCTGGCATCTTAGAAGAATGGTCTCAGCCTTTCAGGCTGGACTTGGGGCAT--AGGAAGTCTGACAATCCTGAGTCACAGTTCATTAGCAGAATTGTctggga
s HiC_scaffold_1 131615781 3412 + 233722169 tttattaatca-----CTTTATTTGTGACCTCCTGGCATGCTACATGTGGTAAAATGCAGATTTGTTACTTTGTATATAAAAAGAATCTCATCA-------TAACACTTTAACACATTGCATAGATCCTTGGTGCAATTCTTTTAAAAGAACCTATGTTCTTggttagaattttcatttttcaaga--aaaatcctTTTCTGAAATGCAT--------------------------------ATTTAAAAACCTGTAGTTGTTGGTCTCCAAACCCTAAATTGAATTCCTCCTTCTACAATAATAGTAAATTTAGGTAAAA---TCAACCACAAAAATACTACTTATGGTCCCTGTGAAAACCAATATGCTAGCTGTAGCTGGAAATCATAGACTTTCTGCTGCCACT-CGGGCCAGATTAAAGAGGACAC----CTGAATTTAAC-TCAGCCCTGCTGACTGGGGCCAGGAGATTAGTTTTATTTAAATCATAAATAAGCTGGGAATtaggaatgcaaaaaaaaaaaaaaaagcg-----------tataCTGAAATGGGAATCTTATTAAGGCTTGTAAGAAAAG--ATGTTTACTAT----CATGCCTAATGTCTTAACACTTGTTTTGCAAGGGTCCACCTGGTCCGGCAGGTATCCCAGGTCCATCAGGAAAAAGAGGTCCACGGGTAAGTAGACAGGCTGCATTTCTTGCTGGATGTGAGAATTAAtaacttttccatatttttt----cctAGTGTTGTACAATATGTACTTCCTCTGGAAACATGCCTGGATCTTCACACTTTGCTTTATCTTTGCCAATTCAAGAATTTAAGAACATACGCAGCCTTGTGTATTTGAGTATAAACAGTCAGCCAAAGAATTCTCTGTGAACACGTCCAGGAAAGACCATCCAATTTGTAGATTAGTGGCTGCCTTG-GTGCTACTTGTAGCGTTATTCTTAGTTATAG---AGTGATCTGAGTAGTGTAACGTAAGGTTCATTTGGGAAATGAAGAGGATTGGGCTGCCTTAAAATAGTGCATTCCTGAATTACAGAGTGGAAAATGCTGGAGCTAGTGACAAGGGGAGAAAAAATTGCCTTAAGGAAAAACCTGCCTTAAGGATCAGCAGAAGTTTCTCACGTTACACAGGTCCAGTGAAAGATTTATTGCTGTGTTAGAATTGGTTTCTTTCCAGcctaaaaacaataaatgtaggTTTTTATTAAAGAATGGCCTTTCTTTGTGAACTAGAAAAGGAATTGTATAGtataaagaaacatgaaaatgccttttatatagtttgctttctttttttctgtatggtttat-cacaaaaaatataaagttaaatc-ACCTTAAATATTAGTGTAAGTTGTTTGTATTAA----------------------------------------------TGTAACTTGTTT---------------------TATGTAGCT-GTGGCCTATGATAAGCTTCTG----------TTGAG------TTTCAG---CTGTTAACATCCTCTAAATTTCTT--CTTAGCTG------------------AAGACCCTTCACCCTCTTCCCATAT--------------------------------------------CCCTGCTGAAGCTTGCCCATCC---------------------TTTTCTCACTGGAACTGTTC--CAATCCTCCCCTCTGTGAAGAGATTTGGGGCCCA----CTTACCTCAGGGAAAGAAGGGTTCAGCTTTGCACTTTAGTTTTCC-TCTACTGCTAAG-------------GCTAGTcttgtaacag----------gatga--ccttcagGTTCTGAATCTGCAACTCTTCTTTCCAGTTCCTTCactgagtttct----ttttctct-----------ccttttgtttatcctgccctcctcctcttaAAGACAGGACAGCATAGTTTTTCTCCACACTA-GCAGTTTAATTGTGTTCCTAATGTCAGCCCTTTTAATCAGTTATTTAACTTGAATGTTACTGTTTCATGTTTTTTCCTCTCCCTAAGTC--ATACTGCAT-TATGCAA-CAGCCCAAATTTAccctttt----aaaaatcccaaactTCCGTAGG--------TTTCCTAGAGATACTGT----CCTCACTGTGGCTCTGTGGAGCTTTGTTAAATAACAGTTCAcactcattttccattttcttatttctgcatcTACAATCACTTCTCATTGTAATTCTAAAGAACAAATAGGTCTTATTCCTAATCCATGTGAATTTTTACTACttcattaaaatatactttttgaaGATTACCAATGACATGTTATAAACTCTGACCTTTT-TCCTTAGTTATTATCTTGCTATATGTGTCTTCAACATAGTATTTATATTACCGACACCTCTATCTTTCTGAAACACTTTGATATGTAATACAGaaccaatgagaaaaataattatcaaGTTTCTGACATATATTTAGATAAAAGGGTGGCTAAATAATTATCAACTCTATATGTTTAGA--TCAAGGTATGGCTAAAATCCACATAAGTACAGGAGATCTGGAGACCTGCAGTGTTTTTCTAGTGCTGATTCTCAATTTTTCTGCTTATTGTTTTTGATAGTTTAAGTTTCCTCTTTT---------------GTAGCCTCCTTGTAGGAttgttataaagattaaaaat--gaaatataaaccaTGAATACAATTCTTGGCACAGGAATTAAGTACTCAATAAGTAAAGTTGATTTGCAAATTCAGATTGTATAATGTTCAATGGATACAC---TCAAATTAACAGATGTTTATCGAGTGTC--------CACTATATGCTAAGTACTGCACTAGCAATATAAAAAGAGTCCCTCTACAAAGAATTTGTAATCccataatttaataatatatttcatgaaaca----aaataac---aaaatatttaaataattcattGGAA---------ATGGCCCAAGGTAATATACAATTTATTGGTAAATAAGTTTTATATGCAGTCATTCCTACAAAAGTTAACAAGAGACCTAAAATTGCTGTGTACTAGtattctcagaatttaaaaatgagtggGAATATCAACTGAAACCTGAAGAATGATTTGGAAAAGTGTAG--GGTGCAAGGAAAATGAAGTGTAGTTAAAGCTCACTAGTAGCATAAGTAAAACTCAAATATGGAAAGGGA--CAGCACTTGTTG------------AAAGAATAGTACTTTGTTAGGCTTCTTATT------CTTAGAGTCGGGCAGTAAGCAGTAACCTGTGGCTGCGGTTAAAGTAGTGAACAAGGGAGGTAAAAACCtcgaggcaggattatggaacaaa---atgaaagc-acagctCTCCTGTATAATTCGTATAGTTATTCTT----AGAC----GTATTTGAGAtcttagaaaaaagaatttgggAGAAGAAGATAGTATT----------CAttgtaattaaattattttata-aatgtttatttgaatATTGATATAAATACTTATtggtattatatatatatctgttgCAATGATAATAAAACTTTTTTGTAATTTGTAGGGCATACAAGGACCACACGGAAATCCTGGATTACCTGGATTACCGGGTCCAAAGGTAAGTTATTAATAGTGAGTAACATATGATTCTCCTCAC-TTTTTGAAGGAAGTTCTTTACTTTTAAGAGTAGATATGGGATATCAAAGATCTCTGTCATCTCCAGCTCATGATTCTTTAACTGGATTGTGTTGGA

a score=11971
s chr3           145325536 1498 + 160039680 AACAAACTGTTGAGAATTCATGAACACAAAATAATGTTATCTAATACCATACACTGTGTATAGCATCGATGGAGACATGGCTGAAGCCAGTGATATACAACACGTACCTAAC--GCTTCCCTAAGTGACTCTTAACTATCATATCCAGGGCCCCAAAGGAGATCCTGGGCTGTCCCCAGGCCAAGCTGCTTCTGGAGAAAAGGTAATTATTTGTCAATGaaataaagatattttaatttatttttaatgtttaatgtt-----------------aataaaaattt-------CCAGggggttgggaagat-----ggtttag----------------------------------caggtaaagtg--------cttattgca-------catgcatgaggtt-----------------ctgagtttggagc---cctagcaaccttggtttaagactg--------tatatggt-cgatgctgctggagtatg-----------------------------------tcactttagtgctgggaggcaagaaaggcaaatcctaggtgctttccccaagttccaggttgagttagggaccctgcgtcaaaaaataaggcaaa---cagtg------------------------atggagaagaccagcattacctctgacct----ccaTGTGTGCATATGTGAATGAGGACATT-----CACTTTGTGCGTGTTcatacacacacacatacacatacatccatacatgtacacatgtattaataaatacTATT---TTCTCCCTTTAAA------AAATAAATTTT-ATTGTGGCCAGAGA-GGAAAGCAGAAGAC--------TATTGAATTTTAATAAGAAAGAATCGAGTAGATTATGCTCCATAGACTTGCGTTGCTGCTTTGAGTCTT---CCCAT------------------TGATTTTATAAAG------TGTCTGCTGGAGCTTGACTTTGTGGCTGACAGGGTGAATGGGG---------------TGGAGCATTGGAGCAGAATGTGGCC--TTCTGTTTTACTGTTGATATGCAGGACATGATGC-ATGTTAGGAAGGTTC----TAACTCTTTACATGGTATCAAGGCTA----CCGTGACTCCTAGAGATAGTTT----------------TAATGTAATTGGATTGCAGAAACTTTTATAAATTTAAAGC----CACATTAG-----------------------------GAATCCACAAAAACAT--TAATCTAAAA-TTTTAGGAATTTTCTTTCTGTTATAGAACTGAATTCAGAGTTAGAAAAACACAGAAAATGAATGAAAGTCTATTTCCAGAAAGACAATATCTTCATTGG---CCTGGTCATTGCTAGGAGAAAAAAAAAATTCTAGGAAATCTGAGAAATA-----GTATGCTATCTTTTAAAATACCTAAATACAGCAAGTTTACTCTATTATTAAATGTT--GAAATTAGAGGTCAACTCTGTTCTGGTGA--GTTCAAAATAGAGACTCCAGATTAAGCCTAAGCATTCATATCAAATATGGTTT----TATCTTTCTCTGTGATTTGTCTGTTGTACAAAATATAGGGTGTTTCAGTATGGGAGTGGAAACTTGAATGATGTC-TCCATTT------GAAGTGTTTTGACTTATTCATGCACTAACTG-------TGCTTAGTAGTGTATATACAAAATGCTCTTAGATGTAAAAATTTAATACCACACGTCCATTGAGCTTTAAGCAAAACCAAAGTTTTGA-----ATAGATGCATTCC
s HiC_scaffold_1 131630002 1750 + 233722169 AATAACCTATGGCtactttattaatttaaaataacttcatttaaaaGCATATAATGTTTGT--------------------------------TATAGACTATATATTAAACATGGTTTACCACATGTTTTGTAACTATTTTATCTAGGGTCCCAAAGGAGATCCAGGATTTTCTCCAGGTCAAGCTGTTTCTGGAAAAAAGGTATTTTTGTG-CTGCAAAATACTATTATAGTTATGTATTTTGAGtacttaaaaatagttttcatcTTTGTAAAATACAGACTTTATTGCAtcacagagaagagaaaacacCTGATTTTAGTGAAGAAATATTCGAATAATTAAGTAactcaagccaggcatggtggcacacttcttTCTATAGTTCtaccactcaagaggctgaggcagaaggattgccatgagtttgaggctagcctggcaaca-tagttcaaggccagcctaaattacatggTGAGAtcttgccaaaaaataaaaaaggaaaagaaataaaacattatccTATCAGTTTAACTTACTGATTAAAATCACTGAGTGTCTATTATGTCTGCCATTTC--ACTCCCTG--TCAGTTAGGGATGAGG-GTTAAAAATTAGAGCAGGGTTTAGTGTTAAGCTCAAAGATTTTGTTGTTAATATAAATGAACAGTATTATATAAGTCCTAATGCCATTTACACTTTTCT-----AGGATATTTCACATACTTTTTAATTGCTTG-----ATGGCCACAGCAACACTTCCGAA-------------ATTAATCAACATTATCATATTTTCTAGTTAAGtagaattaataaattttaaatgtctcATGAGATAGATATTAAATGACAAAGttaatgttatatttatatattttgacttCATGTTCAATATGCTTTTTGTATTATCATAG-TACTTTGAAACACAAACACATGTACTGTTAGATAAAAActaatgttttaaagtaaaaatagcaacaaaatctTTATCAGGAGGAGGATAGTGTTTTctgggaaagaaaaatacaaatggagtttttagaaaacatttggaAAGTTTTGTTTAGATATATACTTGGTGAATATGATACAATGATAAGAtgcttctgtttatatttttatatctttgcaaACTTAGAATCCCTGAATAATTATGGTAATTTCTAGCTTGAAATCTGACCATTTAATTGGA-AACAGAAACTCTCATAAGCATAAAAAATAGCATAATAATTGACTTTACTAATAAATTCTCACCAACTAAATCCTTGAaaattttctaatataaaatttttaggaATTGCACTACTATTGTAGAACTAAGCT--GAATCTAAGTAACTcgtaaaagaaatcaaagtttaTTTCTAGAAACACAGTATTTTTATTGATCTCTTAGATTTTACCTGG-----AAAAACATCCt--gaaat-tgagaaagaaatataaatgccatcatttaaaat--ctaaatatagTACATTTACTTTCCTTCTTAAAGCTTAGAAATTAGATTTCCACACTGCTTTGGTAATTGCTTGAAATAAAACTTCCTGATAAACCATAAACATTTATATCAAGT---GTTTGAACTACCTTTTCCTGTGATTTCTC---TGTGCAAAATACAGGGTGGTTCAATACGAGAAGGAAGGCTTATACAttgttaatcattttttaaaaaaacgttTTGAGTTATTCATACACTAAGTGAGGCTAATACTTCTTAGAGTGT-TACAACAAGA-CTTGGTTG---GAACCTAATAGCGTGTTGCCATTGAGCTGTAAGTGAaatccatgttttaaaatttataggcGTATTTC

a score=11210
s chr3           145328403 664 + 160039680 TTAAGGGGCTGCCTTTAGATGCTGTAAACTG---TAAATCTGG---GGGTAATGGCATTCCCAGAGAATAAAACAACACAGAGAAAGGAATAAAAGTATGCACATGGGGAAATATCAGT-----TATTCAGTACTGGAAGAGGTGGGGAAGTCCTGGGGTTGGGGGTGGAGAGACGCTGGGACAAATAAGAAAGAATGCTAGGATGATCTGAGAGAAACTTGGAACTTAGGCCAGATTGTTAAGATCAGAAATATATACACGGAGGGCTTGTTGTCCTGGGTTAAAA-----CTTTAAATTCTATTTT-TTTCATGGTATTAAATGTCTCTGTTTTGTTTACAGGGTGACCCAGGTCTTTTGGGGTTAGTGGGCCCCCCTGGCTTACAAGGTGCAAAGGTA-AGCA---TTTTTCTCTGACATAGTTGAATGTCAGATGGACATTCACACTTCTGTGGCTA------------TTTGAAGTTGAGGCTCACACTGA--TGTCTCAGATTCCATTGCTCAGCAGAAGAAAATTAATCAAAAACTTTAGCCAGGCTAGTCCAAAAACTTAAAATCCATTAAAGATGAGATCTTAAGTAGAATAAAAAAGACCATTGAGTTTTGTAAAGAAGATCAAATTCACAGGTAGGACAGAGCCAAAGTCACAGACAGGAAACTGAAG---TCCTCCTTTTAAGGTATATT
s HiC_scaffold_1 131633152 639 + 233722169 TTGAATGAATTCCTGTAGATGTTTTGAACTGATAGGAATTTGGCACGTAAAAGGGGATTCCTAGAGAA---AATAACTGAGA---AGGAGGAAAGGCATGGAAGTGGAAATAGTATAGTCCGAGTATTCAATACTTCAAGAGgtaagaggatctcag------------aaagacCC----------GAAAAGGGAAACTAAGA--ACCTAAG-------TAGAACTTCAGCTAGATTTTGAAGACCAAAATTGAATGTAGTAAGCTCTTAATGTGTAAGATTAAAGGGAGCTttcattttctattctctttcatATCATTAAATCTCCATGTTTTGTTTATAGGGTGATCCAGGCCTTTGTGGATTAATGGGACCCCCTGGTGTGCGAGGTGAAAAGGTATGGCATAGTTTGACTTTGACA---GTAGATGTCAGATGGAGCTGGGAGCTTTTCT-ACTACCACAATCTGATTTTGAAGTTGAG-------TTGAAGTTTTTTAAGTtcctttttttcagaaaagaaaatt------agactgCTGTCC--TTAATCCAGAAAAACAATGCCCATTcagaatagaaac--aacaaaaataaaagacatcagCTA-----ATGATGGGCACAAAGTTCATACTTAGAAGAAAGTCAGAGACAAAGCTGGACTAGTGAAGCTTTCTTCCTTGTGAAGTCAATT

a score=85594
s chr3           145337008 7231 + 160039680 [encoded data, 7855 characters]
s HiC_scaffold_1 131639473 6808 + 233722169 [encoded data, 7855 characters]

a score=12747
s chr3           145344404 585 + 160039680 AGCGAGAGAAAGGCTTTGACTGTGTTGATTTGCTGTTGCTGCCGTGCCTTGGGTTGCACTCGACTCTTTTGTATCAGTGAAAAAAGATCAATGTGTAATGCTTTGACAGAAAGCAGTAACATGAGGAGAAGCTGTTCATAATTTTACATCTTTAAATTTAATATTAAGACAAATGACACTTTTAAACACTTCTACTTAGAATTTTGTGGAGTGAGCAG------------------------TGAAACGAGACAATATAAAGATTGTTTTCTTGCTTGAAGGGTTTCATCGGTTCTCCTGGAGAGGTGGGACAGCTGGGACCTGAAGGAGAAAGGGTGAGGTTATTTCCTTCAAATATTACGTCTGAAGCGTTCTCCTGGGAAACTCATATATCAGGGAAGAATTCTTACTGAATTAGCAAT--TAACCCTAGGC-TAAGAGAAATCACCTGTAGAAATAGTATTTGGCTTCTACTAAGAGAAATCACCTGT-AGAAATAATATTTGGCTTCTATAAATTCTAATGAAGTTTTT-----GTAGGAAATATCACATGACCATATCCAGTTAGAGTTTTTAAATTTAATCTTTTAAAGTACACGTTAAAATATGAAGATA
s HiC_scaffold_1 131649894 547 + 233722169 AGTGAAGGAAAAAGTTTGATCTTACTGATTTTTATCAGGTATCATGTCTTAAATTATGTTCCATgcctttttt--------aaaagattgatcTGTAACTTCTATTAGAAAAACAGTAAGATGAAGGGAAGTTACTCAGACTTTTAAATCTTATAACTTcatattattataaataaca-ttttaagtatttatatctagaatttttatgaatatttagactaccaaaatattatttaaatttttgaatgaaaTAACGTGAAGactattttcttgatttaagGGGTTcattggctctcctggagaagcAGGACAATTAGGACCTGAAGGAGAAAGAGTAAGTACACTTTATTTAAACATTACTTCTAAAGTG----------------ATATGTTTatgaaaatgttcaac------agcagTCATAACCTCAGATGTCAGGGAGG-------------------------------AAGAAAAACCATCTATCAGAAATA-----TAGTTTCT-TAAATcttgttgaattttgttaaaaGGAAGTAAtgttatatgtacatatgtgGTTAGATACTGTAagctgaa---ttaaaaatatatactgaaatgttaaaata

a score=18462
s chr3           145344987 1943 + 160039680 TAAGGCTGTGTGTAACTATGCCTAGTCCTGATGAATTTCTTCCTCT------CTGGGGATCATAAATGACTGTAAGTC--AAGGTGGTCATATTAAGAAGGGTGCTTT-AGATATCAATTAATTGATACTCAAACT----CAAAGTGGA--TTGAAATGGGAAAAAATTAAGAATAATGATGGGAATAGTACATGATTTACCAAATTGTcacacacacacacacacacacacacTACTATACAAATACTACATATAGATTAATTCCTGTAA--TGCTCACCAAGTGCTGTTG-------TTATTCTCATTATTGAACGAGAGAGTGAGACATATACAGAGAGAACAACTGATCCTCGACCATGTGCAAG--------AAGTGCAAGTGCTTAGAACACGGCCACCATGTTCTGGGTACCCAGCCCG-GTGGATGACTGTTACAGTCTACTGCTTCTTACATGACCAGAAACCTAAAGAAAAGCTGGTGACATCTTTATAAAAGATGGTCTGCAGCAGTCAGGGAATCTTTCTCTCTACCTTGCTTTTC----TGT--------------AATTGGTTCACACAAAATTGGAAGCATG--CAGTTTGAGGATTTGATTAGCTCTGTTTATCTCCAAACAGAGAGAGAGGAGACCTAGGAAGACAGACATCCTTGCCTGTCTTAGCTGTAGAAA--ATAAGATGCTCTTATTTGTCTGGTTCCCGTTATTGGTGGCATGCGTACT-CTTCACCAGGAACCATCGTTACCCAGG-AAGGCAAGGACCCCATTTGAAAGACTAAATGATATCAGCAATCTTCTCTGGAGAATGGCTTAAATATATTTTTTAAAGAATATA----TTGA---AGTTAAAGGAATCTATTGAGACTTCTCTGGACATGATACTCATATATA----------------------TATTTCACTAATTGATAT-TTAAGAAAAAGAGCTGTGC----------------------TAACCAATGCATAACT--TCATTCAACAAATGCTTGCTTTTGCCTTTTCTGTATCCTAGGGCACCCCTGGGGTCCGTGGAAAGAAGGGTCCGAAGGGGAGACAGGTA----TGTTCTTTGTCCTTGAGGTCCAG----------CAGGATCTAGTCT--TGTTTGTTTCTCCCTTCTTTAAATGTTCCTGAGTGTCTCTGTCTTTGT--TTGTTGTGCTGCTTTAACATTGT--AGCAGATAATACTTGATACAGCAAAGAAAATGTAGA-TGAAGATTAACTCTAACTATAGTACTTCTTAGATACCTCTTAGCCTTTTGGTGTAGCCCCAAAATAAATTGTTGTCTCCCTGGCCAGGAAGTATAACGCCAGAACATACAGGAACAACTGAAA-CAGGAATGGAAACACAGCTTTACCCTAGACATCTTAAGTTccacacagagatgtccaaccttttgacatcatgactcaatgttgtcatctaagaaattctggagacccacagaagtaacaaaaacattgca-----------aaaaatgtattattttaaggatgcttgcaattttagattggacTGTCTCGGTTGAATGTAGCCCTTAGATTGCTGCTTGGTCAACCCTATGAGTCTTTTTTCTTACAT-GCCTTATATTTTCTGATTTAAAAACATACAGAATGTGAATTTCACTAGACAAAACTAGTCCAGAGA--ACAACCCTGGCTAG-----GATAACAGAGCTAACTAAATATCCTTCTTCCATTTGTGGTATTTTTCTGACCACTCTAAGGTAGCTTCTAAGGTGACAGTCTTAC------------------------TGTACTGTGAT-TGTGAAGGTGAAA-AGATTCTTTCACAATAGCTTGGCTCAAAACTTTGGTATTTATGAATACTATCTTAGTGCCAGCAAAATTGGGATCTATGTGTCTGGCACATATAATTGTTTCTAAAGACCTAAATCTGTTACAAGTACATATATTTTAAAGCAACAGAAATCTGTGAATTTTGCGTTGTAAAGAACA--AAGAT------CCCAATAATTACTTTGTTTACTATTTCCCTC--TTTCTTTGAACCTGCCTTTTAAATTCAATATTATTCTTTTGGA
s HiC_scaffold_1 131652105 1880 + 233722169 tacggGTGTGCACCATCATTCCCAGCTCTGACAGGTCTCCTACTCTGTGTCTCTGAAGTTTAAGAGTaactacaaattttaaagtgatCATATAAAGTAGGGTGCTTTTAGA---CAATAGATT---ACTCTAATGTATACAGTGTGAGCTTTAAAATAGGGAAAATTTAACAATAATGATAGTAATAGTTCATGGTATAATAAAGAA---------------------------ACTGTGGAAATACTTTCTATAAATCAATTCCTTTAAAATGCTTAGAAAAT-CTAATGAGATAAGTTGTTCTCattatacataaagaaaatgagacaagcACAGAAATAGT--------TTAAATTGTAAGCAGGTTATTGTAGAGAGCCAG-GATCAGGACACAG-----GTATTCTGACTCACAAGCCTGAGTGTTTAAGTACTATACCCTACAGCT-CGTAGGTGACTAGAAAT--------------GTGAGATATAGGTACTAGATAATATTGAATTGTTAT--catccttctctctgccttgcctTTTCCAGTGTTAGATTACCCCACAACTCATTTCCTATATAACCACAAG-ATGGCCAGTAAGAGggttaaattaattttatttatatccagacacagaggaaga-----cagagatgAAGGTATCC-----------ACTTCTAGGAATGAGAACAAACTTCCTGTTGTTTTGTGCC-ATCATTGGTAATGTGGCTACTTCTGGACAAATAACTACC---ACCTAGGTGATGTCAGGATCTCATTTGGAAGTATAGATGGAGTGGATTAT------TGAATAAAG--TTAAGAAtctgttttgaaaaagaaagggCCTGATTCAATTAAGtgagtatatttaaaatttttagactaTCACTTTAGTTTGTAGGAAATTGTTTCTGCTCTTGGCTACTTTATTAATTGATAAAttgagaagaaaagatttatagGATCTATATAGTATCTAACTcaacaaattcaaaaatattcattcaacaaatatttacctgTGACTTACTTATATTCTAGGGTATTCCTGGGATCCGTGGAAAGAAGGGTATTAAGGGAAGACAGGTAATTTGATTCTTCTTTCTTAAGATTCAGTGTAGAACAATACAATctacttttgtgtttgtttctcacTGATTAAA---------AATGGATATAGTTTTGTTATTGTCATCCAAAATCCATCTCATTCAACAGAT----TTTGATTCATAAAGgaaaatttagatttaaaaaaaactctaaatTTACTACTTCTAACCCACTTATCAAACCAGTGG----------AAGGAACCTTATTTCT---------Gtaatttca----cagaaaatataCAAGTGACTTAAAGCACTAATGGTAACAATAATTCA--------ATCTTTTCTTACATGATCAGATATTGTAGATTTTAATTGCATGTTTTA------------AAGATGTTCAAAATGCCTTCTTCAGTATCTTGTATTTTggatcttaaaaattaaaaatgaattttgctAGGCACCGTAATAAATTCAGA---------------------------------------------AACACGAAGAA-----ATTCTGACATCACCAAATATTCTGTTACTTAATA--------AATGAGAAATT------------GTGGTCCAGAAGTTGTGGTCTTAGGTAGTTTTAGCCAAGGTACCTAATTAGTCACCTGCCTTCCAattgt-------------cctttttaaaatattgcttaaa--gacagttttacattaaaatattctggGGTACACTATATTCTGTAATCTATGAGAGAAAAATTGAGTTTTCC----taacttttct-aaatttttgctaTACATGAATAAAATGTTAATGACAA------TGGAACACaactgattttcaaaaataatta--tctaATCATCTAAATCTATtacaattacatatattttaaaacaatatg---ccACAAATTTGGAATTGTCAAGCTCAGTAAAATCATAGGCTTAGTAACCATTTTATTCACTATTTTCTACAGCTTTCTTGAACTCTCCTTTTGAATTAAGTAGGATCCTTGGGGA

a score=19695
s chr3           145348305 753 + 160039680 TAGGGAGGGTTGCTTTTCTAACTATAGAAGAGGATGCCCCAGCCCCGTCTTTTTCTCATAGAACTTTCTGCTGGAGGAGTCTATTTAAAGTAAACTATGTTTTGGCTTCTAACCCCAGTGTTA-------AGAGTTGAGTATAAGCTC--TCTGTTCAGCATCTGTTATTAGTGTCTATGTTTAGCCC-CGGCAACTTTAAACACACGTAGAGCCCACTATCATCTCAGGAGCATACGCCTTCTGGAGAAGTCAGAGACAGTATTTTCTTTGCTTCAGGAGAAAAAAAAAAATGCAGTTCATTGGGTCATAAAGGAGA---------CGCTGGAGTATTTTGATAGACGGCCATTGATTTTCCAATGATTTCTTCCTTGTCCAGGAAAATGATACCTATTTTCTGGTTTCTATTT--ATGGA-GCTGTCTATTGCAACTATATTTGGCTAACTACTATATGAGGAATGTGTAGAAAGTTCCAGATTCCAGGACTTTGAGTTTGCCTCACCCATGAGGTTGGGA----------------------AAGAGACACCCACTGCTCTTTGGAAAATCCCAAACT-----TGATTTCACGGAGGCGTGTCACCCACAGGTGGCCAGTCAGCTGGGGGATTATGTTCAGAGCTGATAGCA-GATAGCAAATGTAGAGAGCCTTGTAGGTCACCAAAATAAGAAACATACAGTG-ATGTGTGGCGGTTAGGCCTAGTATCTGCAGCTATG-------TTATCTTTGAGGGAAGACAGGAAGTGTAGTTAACAGGTGCTGTGTTCCAAATACTTTTTG
s HiC_scaffold_1 131660746 773 + 233722169 taaaaatgtttatttttctaactatAGAATGAGACATT---------TCTTCCTGTCATGCATCTTTCTGTTGGAGGAGTGTATTTGAAGTAAATTATATTTTGGCTTCTAACCCCAATGTTAGACTTTCAGAATGTAGTATAAGGTCATTCTATTTGGCATCTGTTATTAGTTCCTATCCTTAGCCCAAGACAGTCTTAAATACA--TACTACAAAGTAGAACCTCAGATACTTAAACTTTAtgggagaattttttaaagtccTTTCTTTGCCTCAGG------AAAAAGTTGCAGTTTATAGGACAATAAAGAAAATACCACTGTCACTGGAATATTATGGAAAACTGTCATTAAGTTTTAAGTGA-TTCCTCCTCTttcaggaaaa----gtttattttgtgcaTTCTACTTTAATGGGCACATTCTGTAGTAACTATATTTTCCTAACTGTTGTATGA-CCATGTGTATGAAT-----GATTATAGTAC-TTAAATTAACCCAACTCATAAATTTGGGGTAGCACTGAGATGTGTGACATCCAGAAATAcctgataatttttaaagaagtacaGGCTGAGCATGATTTCATGCAAACATGGCACCTACAGGTGAAAATTTAGACAGGTAATTATTCTTAGAGTAAATAATGTAAGGGAAAACTCAGAAAGCCTAATGGAGCATCAAAATCAA----TTACAGTGAATGTGTGGTAGTGAGGACTA-TCTTGGAAAATATGGATTCTATTTTCtttgagagaaaagggaaggaatgg----CATATACTGTGTACCAAATctgttttg

a score=9717
s chr3           145356830 365 + 160039680 ATGCATACTTTCTGTTACTAAATTC---ATTATAAAACACAGTGAAATAAGTTTTGCTATATTCCGGCTTTGATGGCAGCCTTCTTCCTCTTCCACTGC---AGGGTTTCCCAGGTGACTTTGGAGACAGAGGCCCTGCTGGTCTGGATGGCAGTCCTGTGAGTATTCAGGGATGGTCCACCCTTATACTCCAACATCA--CGTGTCCCCATAGCAACTGCACGTGGCATCCTTCTGAGCATGTTTACAAACAGTATAGCTGGA---CAGTTTCCACACCTCTGGGCGCACTCTAGTTTGTTATTTTTCAGTATGAGAGATAGCCCAAAGTTGTTTGGATAAACCTCCATCATGACAGACGGTCATTAA--CATTAAG
s HiC_scaffold_1 131673802 348 + 233722169 ATAAATGTTTCCTATTACCAATTTTCTAATTAGAAAGCCATGTAaattgagttct-ttatat----------atg--------ttttctctttctctgtgataGGGTTATCCGGGTGACTTTGGGGACAGAGGCCCTCCTGGTCTTGATGGCAGTCCTGTGAGTAC------ATTGCTCAGCCCCGCACTTCAGCATCATGCGTCTCCTCATAGCACCTCAAGTTGCCATTTGTATTATCATATTTATGGAATACGTA-CTGTAATCCAGTTTCCCTACCATT--CTACATTCTAATTTGTGACTGTG-AACATGTGAAATAAGCAAAAAGTATTTGAATTAA-CTCCATCAGGACATGCAGTCATCAAAGCATTAAG

a score=17146
s chr3           145357862  976 + 160039680 TTTAAAACATGCACTACAAAATATGTTCTATATTTAAAATACATAATAATTCTTACTGAATATAATTTAAGCCTTTAAGTACAAAAGCAAACTGTATATTTTAGAAT----GATTTATAGTTGTTT----TTCAGTATTCACATCTGT--------GTTTTAAAATATAAATCAAAGAGAGGGGAGAGGCCATTCCTGCCCCTGATTCCTGTAAATTTGGTGATACATA---------------ACATTATGTTTTTTATAATAATGAAAGCAGGTGTTATTCATATTCTTTACATAAAAATAAAGG----TAGAGGTTTTTTAAAATGTACTTCTAAAGATGTGATGGTTTTTAG-CTATCTGAAAATACTCTCCTAGCCTCTGTATACAGCCTGCCTGTCATTTCAGACAGTATATAGACCAGGTTGGTCTGTAATATTGATAATGCAAACAGTAATCAAGTAACTGATTGCATTTTCGTCTTTTATTAAGTACTTAGAAGACA-----AATTATGTATCTTAACCTAGG-GATAGTTCTA---------ATATCCCAAAGCAG-------TTTTAAAAGAATAAAAGTA---------ATTTGTGCTT-----------------------------TTCAG----TGGAAGATA-ATTTTGACAAATTGTGTCCCTGGAATATGTGACATCAT--TTCGGAAAACCCCTCCGCAGTGTGGGATCATGATGAATGTGTTTTTC-CATTTATTTCCTAACAGGGGCTTGTAGGTGGCACCGGACCTCCCGGGTTTCCTGGTGTTACAGTGAGTATCACTAAACACC-ACTCTCATGAAATAGTTTACTGTGCCGTTTA-AATTATCAGTTGTGCTTTAGAAACTTAGCCAAATGAG----TTTCCTGTCATTCCTGG-TATCAACCCAGTTTAAGCATATTTTTCAAACAGAAGTGAAAAACAGACTAGTAGCATGAATCAGAAAGGTAATTGCTGCCTTTGGAT--TAAGCTAAAATGGCTCTCTTTTATAGCTTAACGTATGTGTGCATGGATACACTCATCATTGTCTTGTTTAAAGGAATTAG
s HiC_scaffold_1 131674321 1022 + 233722169 tttaaaagttaccatTCTAAAATTAGTTTATATTATAAACAACTAATTCTTCTTGAAGAacat--tttaactctttaaattcAAGAGTAAATTGACTATTTTTAGCTTATCGATTTATAATTCCTTACAATTTATGCTATGCTTTTGTtgcaagataatttaaaatgtaaaacaggaaGTATA------------------CTAATTCCAGTATATTGTACTGTACAAATAATGCGACAGTGACATATTGTGATTGCAAtagcaatgaaaacaaatattatttatgtt-tttaaagaagaaaaaggaaatttaaagaatttaaatattgcaCTTCAGAAGAAGTGGTATTGTTTAATCCATCTGAAA-TATTCTACCAAC-TGTATATGCTGAGCACTCATCTTTTCATATAATCTATAGGCTAGTTATATCT--AATATTAATTA-----ACAATGACCTGG--ACT-------------TCCTTTATCAAGTATGTACAAGGCATAGAGAATTCCACATCCTAGAGCAGATGGTGGTCATACAGAGTGCAAAAGCACGGAGCAAAGGAGACTTCTGAAAAATATAAAGTGCCTCTTCAGATTTGCACCTCATGGAAAGATGTGTAAGAGTAGTgaaatttcagaatttcaaaGATACAATTTGGTGTATTCTTTCCCAGaaatttttgtcttaatctttagAAAATCTCTTTCGTAGTTATGAATTATATTTAATGAATTTTgcacatttcttttataaaagggACTTGTAGGTGGCATTGGCCCTCCCGGATTTCCAGGGCTTAGAGTGAGTATCATGAAATATTAACTCTTATGAACTATTTTACTGCATAATTTGTATTTGTTAGGtgtgtttttaaaacttagaagAATGAGAAGTTTTAGTGTCATTGCTGGATATCAACTTTGCTCAAATCTGTTTTTCAGCCAGATATAAAAATTACACTAGTAATATAAATCA----------------CATTTGATGATaaggtaaaataatttatttccatagttt------tgtatatatttatctatTCATGCCTGTTTCATTAAAGGATCTTAG

a score=23401
s chr3           145358955 1065 + 160039680 TGTTTGTTCCCTGTGCTGTTGGCTGTCATACTTACTTTCTTCATTACTCTAGTGATA----TGTTCATCTGTGCGTATGCTAAGCACAGCTGAACATCCAGAACTCAG--TCCTTTCTACAACGGACTCACATGAACTTCTGTGAATTGACTGGTAGCTTCTTCGTCTAATGTCATGAACATGTGCTTTTGGTCT-------CTTTCTTTGACTCAAAAGTTCTCTGCTGCCTATAGCTTTGTGGGTTCCCCTTTGCCCTAGGGCTATAGCACAGACACCCTCAGCTACAGTCCCATGCAT---------CTTCAGCCTGTTTTACCTTCTCCTAGAGGAGAGTA--AGGTGGATAGGGATAGCACAGGACTTTCAGCATACCTCGATGATCTGAA-ACGCTCAC--AGTCACCATGGCTTGCTTGC------CTGTAGTTTCTCAGGACAAGAGTTTGCTACACAGTTTCTA--GTATGTCG-------------ATCTAATAGTGATTT------------TGTATTTACTACTCAATTTTTACGTTAAACTGTTCTATTTTACTGAGTTCTTTATAATAT-------TTT-----------TTTCTAATATCTCCTGATCCCAGAGTTGTTTCTTTTAGAGTCACAAGGAAGTAAATTAAGATATCA-CACATTCCACTCA------AAATGCCAGATTAAGTATTTTGAGACAAATTAAACTAAGACAAAGCTTTAAAATGTTATATTGTCTATGAAAAA-----TAACACAGA--GAAAGACTTTTTTGATCATAAAAATGT-CTCTCTGTCGTTAGAGGGATTATTTCTGAACAATTCCAAAACACAGAAATTTATTATAGTTTTGAGCCTACCATAATCTTTAAAGCTATGAGTTTTGAAAAAACCAGCCTCTGTAGTCACATGAATGACTGGATCCTACTGACAAGAGTTTGAAATTGCAAGCCGTGATATATTTATTGCCCTTGAATATTTATTAAACTGGAAAGTATTACCATTTGCTGCTCACAGTACCATATATTCCAGGATTAAACACATTGGGAATAATTTATCTC-------CTCCACAAACTTTAAGACTCTTCCAAAAGTACCAGCGTCGTGTTTTCCTTTCTGAAATTTGTATCGTATAAATGTAGA
s HiC_scaffold_1 131676100 1086 + 233722169 tgtttttcttccatGGAGCTAGTCTTATTATCTGCTT-CTTAATTGCATTAGTGGCAGTGATTATCATCTGCAAGTATG--AAACACTGTT------TTAGAACCCTGCTTCCTTCTCAGCATACGCTCACGAGAACTATTAGTAATTGGCCAGTGGCTGCTGTTTTTAGTATAATG--------CTTTGGGTCTACTTTGGCTTAGTTTAACTCAAAATTTCTCT-CTATTTATA------------CTCTTTTGCTCTGGTGCTCTGTCTCAGAGACT-TCAACTAAGCCATTATGCATGAAAGAtttcttttatctgtttaattttctcatagaagagagtGGTAGGTAGAGAGTGGTAGAATATG-----CAGGTTACCTTTATGGGCTAAATACGTTTCTTAAGCTATAACGGCTTGCTTTCAGAAGATCATAGTTTTCCAGGACAAGGACTTTCTGCACAACTTCTGTGGTGTGCCACAACATGCTGGATATTTATTGGCAATTTCTATACATCAATTTTTCTAAACattcaatttttactttataatttcttgttttactaagttatttattatatatatatttttataactccaagttgttaatattttatgat------atatttcCTTTTAGAGTCCttgaaaaatagaatattatataaacaaaatatattcatttgaaaaatatcataTTAAGCACAATAATATATTT---ACTGAAACAAAACTTAAGA----------GTCCATGGAAAAAACTGTagcacaaaatgacaaaatgttt-----gtaaaaatattcttttcatatttacATGGATTGTTTGTGTATAATTTCCAAacaaata---ttgtt----ttttaaatctattagAAGCTTTAAAGCTATGAACTTTGAATAAACTAGACATTGTAATCA------TGGCTATTGCCTAATGA-AAGAATTTCAAATTACAAGCAATGATGCGTTAAT----ATTGTATATTTATTAAGCTGGAAAGTATTACCCTTTACTTCTGATAG-ACCCCATGTTTTGAGATTAAACATGGTGGAAGTAATTTGTCTTAGTTATATTTCATAGACTTTAAGATTCATCCTAACGTAAATATGTCATATTTTTCATTCTGAATTTTGTATTGTATGAATGTAAA

a score=54366
s chr3           145360643 9080 + 160039680 [encoded data, 10909 characters]
s HiC_scaffold_1 131677740 9630 + 233722169 [encoded data, 10909 characters]

a score=36922
s chr3           145376942 2515 + 160039680 TTTCCCTTGCTGAAGATTGTCATGAGCTAGAGGGCATCTGTCTGT----GTCTCCCACTTCCCGAATGCTGCAGTCTTCTGGGGTGAATGCATAGGTAGTAGGGCTT----------------CATGGGGCTccccttgaaaatgacagccttcacagtactgctgtgta-tggaaaagagtggtactcctccatatagaatgctttactctcagagtccaaagtggctgatccttcctattggtgacagaatgaatact-gctgtgctgaatttgttctgtgggagattgtc-actacattgatagtcaa-tggactctggaaacctcagaggattggctatcccatgaagcttcctaaagtttgttctcaccatctcgaatatttgtctcttgtcaagttgttcctgggat-agtcacctttgactttcctaatccattctgtataacattatgt--ttagtggtttagggtgttgttgt--atcatattctgacggcccacaccccttcagactatattattatgaaagaaatctggtaacccagaaaaaaactataagtgactattgtctaacccaaacaaatgcaaacttttaattctctgttgtaattatacaggagaagaatacatttactaaatcagttaactacacagcaaagatggggagtcttagtaatccactgtcgcagttgacactgccgctgacacagcagctacaactggggctGTGGTAGG----------------------------------CTCCTGCCACTCTctgctgaagtaaacagtgttctgatagcaacctccacccctacatcttttagatctttgatgaCAATGTCGATCTCTGATGTCCT----------------CTTCA-------------TCCTTATCCAATGcatgtataca-----------cacacacacacacacacacac-------------------atatatatatacatgcatagacatacacacac----caaatacacatacataactg----------gaaagcatgaaaatgt--------gtggtggttggttgATTA---TTAAAACTCAGAGCTCTACCAGACCCCTG----------TCTTTCAGGCTTCTCTTTAGATAGTCTAATTCTG-TTGTTCGTCTCCAATAGAGCCTTTAGGGA--------------CAATCACTAACAACCAGATGCTGAGGTTAATTAACATGTGCCCTATCTTCAAGT-AGCTCATATTTTAGAAACTAGTACTCAAT-------ATGCCAGATGCCTCCTTGCATT-------------------GTATTTAA---GATGTGATAAAGTGAAAATTAAACAGC----CATTCCTTGAAAGACTAGGAACAGTTCAGTCCTTGGAGAAACTGTAGTTTTGGTAAAAAGAATTTCTTTCCTGGGCCTCCTAATCTTTTCTTTCTAAACTTTTGT---CTCTGGGCCATGGATTCTTAGCCATCCAGTGTGTGAACACAATTGTTGCCAAATGTATTTGGCAAGAGTGTGTGTGTGCATgagagagagagagagagagagagagagagagagagagagagagagagagagagagaTTTGTCCTTCAGTTGGAGCTTATTCTTAGTGAAGGACCAGATAGATAAGTTTCACTTTGCATAGTGAGTGATTGATACTTAAAAGCAACATATTTTCCCCTCAGAGACATCTCTATTTCACCCCTGAGTGGAATCCTAAAACTAAGGTAACAAAAAGTCTATGATTATCCAATCCCCGATATCACTCCTGGAGGGGTGTTGTATCGATGTGGATGACTGGAAAATCTGATGCCCCTGAGGTCAATCACAC----CATGTGGCCATGTATCTGCTTG----AGGACTGGCCAACAACTGCTGCTAGTTCCTTGCAGACAGGAAGCTCTGAGT--CCTAGCAG-CAGTAGGTGATGGTCAAGGGTTCAGTGGAAGCTGTCATAAATGT-GGGTATTTGCCATAGGCATTGACTAGAACTGTCCTTTGCTGGAGGTCATTTGGATAAACATTACCTTAGAACACTTCAAAACA-----------TATCTGTTCTGTATGTTTTACTTATTACA-TCAAGTTATGAAATTGCTGTAGTAATGAGG--TGGACACCTGTGCATTTCTGCTCTTCATAGAGT----GGTATTACAGGTGTCTCAGTA-AAAATATCATTTGTGTTAACATAAAATGTTCTTTCAAAA-AATTATTTTTCTGCTTATAATAGAAACATATAAA-TGATATTCAG-AACGCTTGCAGTTTCTCTAGACATAGTAGCATTGGCTTTGAACAG-----------AGATCCCTCGGACTTCTAATAAGG----------TAGTGGGATAGTGAGGGATTTTGTTGATTCAGCTGTTAACTCCCCTGGGCTGTTGCTGCTGCCAAGTATTGGAGTTTGGGGTGCTGATTTTAGTAAACTGAACCAGCTGTTTATCACAAAAGTGAGTCAGGAGCACTGATCACAGAAATGC-AGGAGGGGCTAGTTAGCA-GATACCTCTTCTCCATCAGGGTGGTCTTCATTAGAGAGAAAGAAT--AGTT---TGGAGAGTCTGTTGATGTCAAATGAAGTCATCCTCTTAATT--------------------------------------------TTTGGCTACCTGTGTTAGATGACTGTG--TTAATGTTAGTAGGTTCCTTTCGCTTAATTCAGTTACTTCCTTGATATCTTTTATGAGTTGGATTTGATTACGAAGTTTT---TTCTTTGTCA
s HiC_scaffold_1 131690261 2604 + 233722169 tctctctgtctgaaGATTGCCATAAGCTatactgaatcttttttttaacGTCTTACATCTTCAGTACTATAGGATATTCTGGATTGAATACCAGACTAACAAGGCTGATTGCAACATATCCTGCACTGTGTTCCATTTAAAGCTGTCAGCCT--GGAGTGTTGCTCAGTACTTGGCTACAGTAGCATTCCcagtcataaaa-attttgttccCAGAACTCAAAAGGACCTGTCCTTCCTAATG-TGAGAGAGTATATAATAGCTTTTCTTTAATC--TTTAGAGAGGATAGTCCAATATATAGTTGGCCAGGCAGATCCT--AAATTTCAGAGAAGTGTCCATCC-GTGACTCTTTGTAGGGTTTATTCTCATCATCTGGAAGGGATGCAGCATGCCAAGTCTTTCTTTGGATCACTCGTCTCTTGCTCATCTTGGTCAATCAGCATGATGTTATGTGTTTAGTGCATTGGAGCACTGTTGTGCAGCATGCCCTGAAGGCCCAGATCTTTTCAAACTATATTATtatgactgaggcaggaggatccaggaAAC--CTGTAAGTGATTATTGTCCATCCCACATGAag--aaactttgtatttttt----taattataaaggaAAGGAGTGTGTTTTCCAAATCAGT-GACTACACATCATCTGTGGGAAGTGTTAGTAATCTGCTGTAACAAT-GATACTACATTTGACACAGCAGCTGCAACTGAGGCTATGGTAGTACACAATAATTCTCCAGAAATCATTCTCTGATTTCTTCAGGGACTTCTTGGTGAATTAAGCAACGGTCTGATATGAATC---ATTCCTACATCTTTTAAGTGATTAATGGTGTTACAAACCTCAGCATTCTTAGGCTTCTCTAACCATCTtcaaacctttctaaactcttcttccaaattatttctaaaagtttCTTATCCACATGGTCAGGTATGGTCACTGTAATTGTCCCATTCCCAATATCAATATGTAT-CCTAGTCACTTTCCCACAGTTCGGATAGA-ACACCTAACAGCTGCTActcagaggagaagaggaggtaTAACGGAGTGATGAGTGACTGACTGATCTCAGAACCCAAGGGTCCACATAACTATGGGAAGGTTTGATCACTTAGGGTTTTCTT-AGATAGTCCAATCCTAACTACTCATTTTCAGTTGATCTTTTAAGGGTTTCTATTATATGTCAATCACTAAAAA----ATGCAGAACTGAAGTA----------TATCCTCCAATGAGCTTATAGTCAAGAAATCAATATTCACTTTTTTCTATGCCAAAGGCTCCTCTGCCTTTGTTTTCTCCAGGCAATTGGTTTTTGATTAGATTTgacaaact-aaaatcaaagatcAAAGCATTCCTTTAAAGCCTAGAATCAGTGCattctttatagaaaattggaagatAGTCAAAGAAACT-----CTTAaaactctttttctcttttttctatattttttttctccttgggtCATGAATTCTTGCACATCT----------------------CAAATA--------AGCAGTGTGC----------------------------------------------------------------TTTTTACTTCCTTTAATTTACCTTTCTAACAAAG-------------------------------------------CTTAAAAATAGGAGAAAGGCCTTTCAAAGATATTTACATTTCGGCATCAAAAAATGCAGTGAAACTAGTGTGG---ATAGTCTCTAATAATAGAATTTATGGTGTTATTTGTTTAACAGGGAAGAATT--TATAAATGATTGGAAACTTTGATGCTCTTCAAGTTATTCATACTGTACAGATGGTCAtccaacaaaacaggacagaattgGCCAACATTTCTTGCTAGTATCTTCTAGTACAAAAGTTCAGATTTCCCTAACAATCAGCAAATG-----CAAAGCACTCTTAAGTTTTGTCATAAATGTTAAGTATTGGCCATTGACACTGA--AGAATATTACTTCCC-----------------AGTATTACTTTAAG------CAAAaaaagggtttttttcccccactcTTAATATTTTACTTGTTCTAAGCAAATTACTAAATTGTCATAATGATGAAGAATGTGTATCCATGCATGTAGGCC--TCATCAAGTCGTAAGTATTAGAGGTGTCCCAAGATAAAACATCACTTGCTTTAG------ACTTTTTTTCATACtgattctttttttgcttttgataaaaatgcagaaaatactgTACAGgaaattttcctatttctttaagCATAGTATTGCCAGTTTGGAGCATTAACTGCATACAGATTCCCAG---TTCTGGCAATGGATTGCTTTATAATGTAGTAGCAAGATAGAATGTTGATTCAGCTGTTAACTCCTCTGGGCTACAGTGATCCACAAGTTTTGAAGTTT-GGATGAT-ATTCCTATAAGTGGAGTTAGTGGTTTATTACAAAAGTGATTCAAGATCACTCATCACAGAAATGCTTGAAGTGGTCAAGTAGTACGTTCTCTTCTTTCCATcagggtggtcttcattagagaCCAAGACTGAAGATAAGAGGAGAGTCTGTTCATATCAAGTGAAATCATGTTTCTAAATATCCATGTTAGCACTTCAGTGAACCTGACTGGTATAAGTCAGCCTGTGGCTAGCTGTTTTAGTCGATTAGAACTGGGTGTTAATGAATCGCTTTCACTTAAACAAGTTACTTCTTTATTATC-TTAACGACTTGGGTTTGATTGAGCAATTTTGGATTCTTAGTTA

a score=24837
s chr3           145382341 1570 + 160039680 CCCGGAGAACAcccagtgataagaatagtgcctggtacattcagtggtattaagccggtcaactgacatttattaa----------------ttaaaGTAGCCAGAGAAATCCCTAATAGATGGTAGGTATTTAGTGTCTAAAACCATATTTTTCTAAACACGTGAATAAA---ATGATGATCGTGCTGGTATTACAGGTGAAATCATTCAAAATTCAAACTTCACTGAGTTTTACATGGGAAGAAGTTCAGGAAATAAG-ACTTTTTTTTTCTCGAAAGGTCTTCTGACCACACACTAGGTACCAACAGAGCATGTTTATCTAATCCATCCAATCCTAGCTGCCTCCTCGCCGGTTTTAGTGAGGTATAATTTATGTATAACGAATGGAATTATATTATACAGTTCAACttttt--tccttggtgcaggatctcctacagcctaggctgaccatgaattcactatgtagctaagaacagcctcaaactccacatcttcctgcctctacctcccaatgactgactgagattatagccatgtaccactccaccTCAAAAATTACAGTTTAAT--TTTTGACATATGACTAAATCGTGCAAACATCGAAACTAAGTGAGTGACGATGTAACCAAC-CCAAATCCGTCAGTTCCCTTGTTTAC-TCTGTAGTCAGTGTTGTCCTCCCCTCCCCCACCCAACAGCGTACTATACTCCAACTGCTTTTTGCCACTATTGATTGTTGAAGTCTGAATGTCAAATAACAGAATGGCTTGTTTTAAAATTGACAGTTTGGCCTAGCTTTGCGTG-----------------GTGGACTCTGTCTCTGACCCTGTTGGTGCCTTTAAGGGTGATATCAAAGATGCGTGGATGCTGTGTGGAGCT-------------------GGGGACGTATTACGTCATGAGAACTTGCCTTGTCTCTTG------TTTGAGGACTCTCTGCCAGGCACCCCTGA----------TGCTGAACATATGGGGCTCAGCTGCAGTGTGTTTTCTGCTCAAATACATGCGACTGCTCAAAGGGGGAAAATCTATGGAGAGGAGTGATCGGTTGCAAAACTTTTCAAAAATATCATAACGAGAACAATCTGGGTCTGGAGGCATGTTCGGCCTAAAACGGCGAGGAGGGAATGAACTGAACGGGAACCAGCTCTCTCAATGGGGTCTTCACACTGCGTTCCTCGTGGCAGGAGCTTGTGTTTCCTGCCTGTGGTTTTCCCTGAAGAGACCGAAGCTCCTTCGTCCGCAGTA-GCCCCCTGCTCCCTGGTTGAGTTTGGTTCCTATAGTTTACTGGAGAAACAACGTTATTACTTTTGCCCTTTCAAATATTTTTGTTGGCAGTAACTCTTTTGGGAGGCTTATTCTCATTCAGAAGAAGTCACACGTATTCTTCCTTTTGATAGTATTGCTTTCCTTCTTGGGCTTGCCGTATTGTTGGCATGATGCCGCTTTCCTAAAAGGCAAAAGGAACAAAACCCTACAGCTGGAACCTGGGTCTC------------AAATCTTCCC-TACAGAACCCACTCCCTTGCAGGGTGTGCTCTTTCTTGTTTGAATATGCAAAATTGCAATTCTTTCCATCAAAACTATG----CTGtttttcttttcctttttt
s HiC_scaffold_1 131699461 1415 + 233722169 ctcTAAAGATATTCAGTACCAAGAATGGTGCCTGACACATACTATG-TGTTAAATAGATGAACTGATAGTCTTTAAGAGATTCATAAGAATGCTAAATTAGAATGGGTagatgcatataaata-----tattgaGAACCTAAATTTATACTTACCTGAACAcatctataaatatataatgacCATAATTTTGCTTCAGACAATA---------GTCTGAACTTCACTGACTTTTACTTAATAC-AAGGTCAGGaattaaatactatttttccCTCTAAAG---------------ACTATGAA----------GTCTTTATACAATGCTACCTAccata----------------------------ataatata---ataaagacAATAATTATCTAAAACAATAtcactttttcatcttttttgaag-----------------------TATAATTGCATTAT-------------------AACTGCACCTATTtct---------------------------attata----------------------------taatttaataattttgacATACATATAAATCATGAAACCAtc---actaa---aatgaaaatagcatatacatcaaactcacaaacttccCTGCTCACCTTTGCAATCCCTTTTTGTCCCTTCTCTTC-------------ACT-TACTCC-------CTGAGCTACCATAGGTTATCTA---CTATAT------TATCAGAATAGTTTACTTTAAA-TTGTAAGTTTAGCATAGTTCCATGTGCTTTTAGAAGAACGAATGTGGACTTC----CCAACTTTGTAGATTCCTTAAAGAGAGATTTCAAAAATAC-TGTATACTA-ATGAAGCAAAATTTCATTTGTAACCTAGAGTATATGTTGTATCACAAGAAATTTTactgctttttgggtttttttggagaATTTT-------CACTCCTGAGTTTTTAGGATAATACACATATGGAATTCAGCTGTGCTATATTTTCTGCTCAAATATATGGAATTACTGAA---GAGAAAAT--ATGAATAGGAATAATCAATTGCAAAACTTTTCTAcaatataataatgaaaacaatctGGGTTTGGTGGCTTTTTAGATctaaaacagcaaa-agagagtGAAATG-----GAGCCAGATACCTAGATggatttcttgttttgatttttttcccccagaagcTCATATTTTCTCTCTGTGGTTTTCTCAGAAGACAGACCAGCTCCTCCATGTGCAATTTGCATGCTGCCTTGTGCTAGAGTTTAGTTCCTATAGTTTACTGGGAAAGTGGATTTATGACTTTTGCCCTTTTAAATATTGTTGTTGGCATTAACTTTT---GGATGACTAGTTTCACTTAGAAAAgatcat-tttaatcttttttt------tattactttccgTCTTGGAATTACCATATTAATGACATGACATGTACTTCCACAAATGTTAGA-GAACAAAATCTTATGAGTACATTTTGGATCCCTGCCGCAAATCAAATTCTTCCCTTACAGTACCT-TTCTCCATCTGGATGCACTCAGCCCCATG---------AAAATTGAAATCCTGTCCATAGAAGCTATGAtaattgtttggtttttcttttttt

a score=61567
s chr3           145385950 3363 + 160039680 ACATACTTATTAAATTATATAATTGATATGTGGTAAAAATCAAA-ATATTTAATTGAGT--TTGTTTACTTATAGATAATTTATGATATTATTATCAAGTCAAAACAACAGACAGAGCTAGCAAAGCCAGGAACTGCATCTTTATAACTTTTA--ATTTTTTATCCTTTTCTTCAACTCTTCTTGCCCTTTTCCCCCATAGGAAGTCTTTAAAACATT-TTTCATTATTCTACATTAATCCACATTTTCCAAAGTATTTATATAAATGACTC---ATAGTCTG----GCCCTTTTCACGTAGCATAAGATACTTGTGGTTCGTGCAGTTTGTTCCATCTTGTGACTGATTTTCATTAATTTAGCCATTATATTTACTTTTTGTTTGTTGTTTATCCATTTGCAATTTTAGTTGGAAGAAATACAAATCTCAATTAAAAACTGAAATATATTAGTCTCATTGGAAATCTACTCAAAATATCAAAATATCAATGTGTGCCATGAAATCCCATGTATTTACCTTCTTAGGAAACTACTTTTTGA-GCTTTTGGCTGCCACTAAGTAAGAA-GGCAGTATTTCACTTTTATGATTTCCTAGGAACCAAATGCAATCTGCTAGTGCCTTGGTTCCCAGGTTTTGTTATAAAAATGCATGTGAATTAGTCTCCAGCCTTTAGTGATTAGAGAATAATAAAACTTTGTTTTTACTGGAGAGAACACTGAATCACTCTCTGTACACCAAACAGATGTGCAGGCTCTGAAAATAGAAGACACATTTGCACTTAGTATTTTTAAAGCTACCTCATTTTTTCTGCTTCTCAGTAACAATTTGTGATCAGAC--TTTCTGTT----AAGCACCAGAAGTCAAGCTTtccccctcctcctcctcttcctcttcctcctcctcctcctcctcctcttcctcctcttcctcctcctcctcttcctcctcctcctcctcctcctcctcttcACTAGGGTATTATGTTCTCATGAAGTGTAATGTGATGACTTAACTAAAATAGTGAAGCTCTTTGT---GAAGAAAATGTTCTGACCTGTTACTGTTATTTTAAATACAAAGCATTGAATCTGGACATCTTTTCATCCAATTTTTGTTTTTACTCCACTTATTATAGATTTGCCTGACAAAATGATTTTTTTAAATGGAGAAGTCTTGGCCCTGAGAATATACTGTAATTCTTTAGCATGTAAACTCTGACATTTCAATGCTTGGCTTACGCATCCTGGTGCCATCATTTATTGGCTTTGTAGATTGAGCAGTAAATTTAAACATTAAGTTGAAAATTCCTTT----CTGGGTGTTACCATTAAAACTCAGCTGACCCCATTAA--CTAGTTTTTCTATTTTAGAATGTATTATTTAAATGAAAAG--ATCTCTACTTGGGAGTAATCCAGCTATGaatatttaaaatatagaaaatatttattGGCCAAGTTTTCTAAGCTAACCTGTGTGAGAAGGACATAGAATTTT--TTTTCTTTTAATAGCTGTGCGGATGAACTTCATAGA-TCTTCAGTAAACTTTTAATTTTGAAACATTCTACTTCCTTAACTCTAATATGAGGTTTGACTCATTGATATCTTTTGCCACATTCTCTTCTCTTCATCTGTGGCACTTTGCATCT--ATTTCCGTGTATCCTGTTAATATTTTGAGTCACAAAAGAGCCAAGTGTTC--ACATACATCAGTCATGTCATGTTTAACTAGAATTACCT------AATTTTTGTTACTGTTTAACTGCAAAAAATAAATCACAATCACAAGAGAC--TGTAAAACAAATGTGTATCACACACAGATTTCAGACACATTTCCTTGTAAGTACTGTAAGGTC--AAGGCAGAA------------CTGCTTGTCACCACCCAAACC-----------------------------------------CTTCTTGTGTCTTGCT------TTGGGTTTTCAG-----------------------------TTTGGGgtttctttccatgtgtatgttcattctccagtcttc-acccccttgtaatttagctgagg------aagcacacagcctttggcttacacagtct--atgttgattatagtctcatggtgtagggttatatgttccttga-tttctgtttttcttgaaaattgctagtcacacgccagagtcctgaccatactgaggtt------tgttttggcaagtcagcaggctgtcctatgttcttccatctacaagcacatgtctccgtcatcctttgtctgtggggatgcatgtgaggtgttg---------------------------ctataggctt------tggggagggctggaggctttgg-------------------ggagggctggaatgcccttatctactat-ttggatga---aggctgtgcagaatataaacacggacaaatgaatgcttaattgttgattttt-cttatcacttttcaacataatgagtgagcttccacttatcctgtagatatatggccaattttaaagttgatttgtttgaacttataaatttaagtatat--ttattgtggttaagctcaattcagttcttcaccccattgaaaaaaatcttttccctccatttttggtttgtgaactcccacccaagcgcctgaagcgttattttgaaattactctagcttcaatgtttgtgatagctttcttgattgctggtatgataaagtgttctggggtcatctGGAAAATGGACACTTTATGAATGTATCCATGAAGGTGCTCTGAGCCAGTGTTCTG-ACTGGTTGTAAATCAGGACCAAGGATCGCAAATTAGCCACAGGACATGCTGTCCTCTTTTTTGAAAGAAATAAGTCAGCCACTcaacaataacaacaacaacaacaaAACTTTGTAAAGTAATTACTGCAAACCAGATGT---------CGCTGTCCTTGCT-GGGGAGTATGACAGTGGAAAACACATGAAG-TACACCCAAGGACTTTACAGTCTGAC-AGAAAAATAAAACGAGAC------------AAAACACCG-TGTTAGGTTGCTTTGTGGTGTCAGAGTTTTAAGAGAA-----------------GGAAAAGAAGCATTTAAAGGTGAAGTATAAAACTTTTTGGCTTGGAGCTCCAG---------GTAATATCCATTCAAGTGGTGAACGT-TGGAGGAGCAGAGAATGCTGGGTTAGAGATGGAGGTCAGCCAGCCAGTGTTTCTGCAAGAACCAGAAGACAAGGATATCACCTC----------ATGACTTTTCTTCCCAGTAAATTT----------AAAGTATTCAAGAGAGAAAGCTTGAAAATATTAGATGAATAC---AGTTTTATATGTGCATGTATATAATTATCAAGTGAACCTGATACCTTTGCACCAGTAACACAATTAATGAATCTGTGTT----------------AACTACCTCATGACCTTGAGCAACCAGCCTGGTAGGAAGAAGTCCTTTAGGTACATTGCCTTATTTGTCTTCTGACACAAACATCCTCAAC--ATATTTTTCTCCACATAATCCATATTTTAAATCTGGTATGCAAATTACCAGAGTACACATTTCTTTTCT
s HiC_scaffold_1 131701614 3353 + 233722169 acagctttattgaggtataT--TTGACATATGGTATATTGCATATGTATACAGTGTGATAATTTTTCACGAATCTAAAACCTGTGAAATCATTATTAAGACACAATAAGGAACATATTT-GCAAACCAAATAATT------------CTCTTACCATTTATAATCCCTTTCTTTgg-tcttctatttttcttccc----aGGCTATGTTTGATATGCTCTTTTATCAccataaattatttcttattttctgaaatctttctaTAAATGGATTCAAATAGTATGTACCACTTCTTTCAATTAACGTAAGTT-----------------TTTGCTT-ACTTTGTGATTAATTTT----------------ACATTTACCAT------------------------ATTTAAACTGGAAGCGCTATATATttcaacagaaagagaaatttgatTGCTCCTATTGGAAAATTACT-AACATGT-------TCAATGTATGCCAAAgaacattatatatttattttgttaggACACTAGTCTTTAAAGCTTCTGACTTCTGCCAAACAAAAAtggtaatattttccttttatgatttcCTAGGAAACTAATGAAATTT-CTAGTGCTTTGGTGCCCGGGTTTTGCTGTAAAAATGCATACGAACTAGTTTCCAGTGTTTAGTGATTAGAGAataataaaactttgtttttactGGAGAGAATGCTGAATCA------GTGCAACAAACAGATGTGAAAGATCTGAAAATAGAAGACACATTTGCACTTACTATCTTTAAagctacttaatttttt----ttcttgataaaaattGGTGGCCAGACTATTTCCATTAAGAAAGCTCCAGAAGTCAGattgt--------------------------------------------------------------------------------------tcttccttttcctcactAAGGTAGTTTAGTTT--TAAATTGTGATATGATGACTTCACTGAGACAGTGAAGCACACTGTGGGGGAGAAAATCCGTTTACTTgtcaa---tattttaagttttaaa-attaa--------------tcatcagagttttgtgtttacttttcttcttgtgtattt-tatgtggatGTAGTTTTTACAAATTG-GAAATGTAGACTCTAATGACACATTTT-ATCTTTCAATCTATAA---CTGAAATTTTGCTGCTCAGCAGTGATGCTCATGTTCTGtagttt----tatttatagtttaagCAGCCAATTTGAGcac----ttaaaaattcttttacaaaTAAATGTTATGTTTAAAATTCAGTTGATCCAGTTAACTCTGGTTTTTAGGTTTTAAAACATATTACTTAAAAAACAAACTCTCTCTCCTTGGAAGTAACCCaggtatgaatttttaaaataatgaaagaac---tgGGCTAAG-TTTCTAAGCTGTCTTATGTGATAAGGAAATaaagttttcctctctttttaataactgTAATAATGCTTTTGTGAGATTTTTcagtatagtttttattttaaaatcttcaacTTTCTTGACTGTGAAACCAAATTTG-----CTGACATCTTTTATCCTATTGTGTTTT---------TGGTACTTTGTCTTTTAATATTCCTTTA--CTGTTATTTCTACTCATTGAAGGAAGAACAGAAATTCAAACATAGATTAACTATCCCATATGTAACCAGAATTGCATTAGTAGattttttcctactgttttattGT--GAAATAGAACACAGGCATAGAAAACCATGCACTGCAAGTGGATAGCACATGCAGTTCTAACACAACCTCCTCTGTAAGTACCATAATATTCAAGAGTAGAATCCCTGGAATCCTCGCGTGTTCCAGCCCAACCACAAGCTCATCTCTTCTGGCCAAAGTAAACAATTCTTCATTGCTTCTTCTTTGTAGCTTATCACTTAAATTTGCAGTCTTAAAAATAGTGAGTTAGGCTTGTTTATTTGCTGTGCTTTTCAATCTACAAGTGATCTCTCCGTTCTGCTTTCCCCTTATCA-TTATTTGAAACTCCCCATTCACGTGGC--TGAGGTTTCACATTCTGGATTTTGCCGATAGTCTCAGGGTGTAGTTCTGCATGATTCTGGACCCTGTGCATTTCTTGAAAATTGGTAGTTACATTACAGAATCTTGACCATGTTCatgtttctttatgtttttataagGTTGTAAGTGATATTATGTCCGTTCAT-TACAAAACAATGtct-aattatcatttttat-----gatgCTAGTAACAGTTTAAACTCAAGGCCAAATCTACCAGACCATTTACAggattaaaaagtagaaatttctatattctctcacttcttttttttatttattggttagCATACATCTCCTTGTCTTCAATATTGGATAACAGAAGTTGAGT-GTATATAAAAAAGGCAGAATAAGTCATTGATTACTCATTTTTGTTTACAGATTTTCCAGATAACAATTTGACTCCCTTTTGTCCTCTAAACac-tgattattttta---ttg------------ttataaggTGACCTTCATCATCAGTGTGCTTCAATACACTGAAATTCTTTTCCTTACTGAATAAAG----TTGAATAAAGTTCTGGTCAGCAGGAAACTCTTCAAATACCTTTCTATATCTTTAAATATGACTGTAGTTTTGAATCCTTTGATAGCTTCCTAGATTTCTGGTATGACAGCATGTTCTTGGCTCACTGGAAAGATAGGAAAGTTCTGAATGTGTCTATGGGAAAACTCTAAACCAATGTTCTGAACTGATTGTAAGCTAGTTCTGAAGGGC-CAAGGGAGCCACCagacatgtttttctc-tttttaaaaatgacaactcATTCATTCAACGATAAC-------ACAAAACACATTTGTAAAGTAATTACTATGTGGCAGATGTTGTACTAGATGTTGTACATGTTCTGAGAACGTGATAGTGAACAACACATGAAACTGTGCTCAGTGAGTTTACAATttgatgaggaaaataaaataagcccaGCACCATGTTAAAATGCCATTGTCAGATCCCACTGTAGAGTGAGAGTtatagggaaaaaaggaagagaaaaaggggaaagaaaataattaaagatgAACTACACA--TTTTTGGCTTGGAA-TCTGGTGAATAAGTGtaatattcattcaaatactaaaTACATGATTGTGGAGATAATTCTGCGTTCAACTT---TGCAAACTAGCTAGTGTTACAAGAAAAGCTAGAAAACAGTTGTCTTGATTCAAGTCCACAAAGGACCACCCACCTCACTACATATAGTAACAAAGAGTGCGTTCAAGTGAAAGGGTATGAAATTATTAGGAAAAAATctgaattatatacatatatgtacatattt-----------------cctTTG-ATCACTAA-ACAATTGACAAGTCTGTGTCAAATGTACGTGTATTAAACTATTCCAGAATGTCCAGAAA----TCTGATA-TCATAAGTCTTTCTAGTACA--GCTGTCTTT-TCTTATGTCAGAAGTGTTTCCAACTGAAATTTTTCTTCACAAAATCCAAATTTTAAGTCTGGAAGTTAATCTGGCAAAGTGTA----TCTGTTCT

a score=15151
s chr3           145389332 950 + 160039680 GAATCATTCATGAAGTAAATTCTCTTTTTAGGATACTGGGTTTTTTTTTAATCCAAGTATGGAACAATTGTTTAA--TAATCATTTACATCAAATTTT-GAAGAAAGTAGATAATCTTAATTGGGCA-AAGGATACAGACAACAAGAAGTTTT---ATATGCTTA-CGGATTTAAAGTGATTTGCTGTGGAATAAACTCTCTACCTTTTTATATCTACTAGGGTTTTCCGGGAGACATTGGGATTCCTGGACAAAATGGACCTGAAGGACCAAAGGTACAAAAAACAA------ATAAAAACCATACTGTATGTAGATATCTAGAATTTTCTCATTTAAATTCTTAATATGTGTCGAAAAAGATCTTAAGAATAC-------CAGAAGTATCAG---------------------TAATTAATAGCCATCTTGAGTTCCGAATCCA-GTCGTTTTAAATGATTTTCTGAATTTCTTGTAGGAATTAGAGGGATAATATTTGAAAATCACAGATATCATTCCAAAGGATTTTTTAAAGGAGAGAAAAATTAATGGGACAACTCTTTAAAGTCACAGTGGAGAGTAAGTGGGAGAAAGATTTCTGACTACTGGAACATTTTAGCACTGATAAAGTGCCCATTGTTACAGTAAAAGAATGCACGTGCTGTCCCAGAGTCTTGTTGTACCACGAGGAAACTGATGTAAACAAGAAACCTTCACATC-TTCGAGCCTTTGCTGCTGCTCTGTGTGTGCATAAAGAAGTCAGCATCAACAGTTTCAGCATCAACACAGATATGCCCAGG---TGGCCATGCAGCAGGCTGGGCGTCCCAAGTAAACAGGCGTTAGAAATAA-----AACCATGATGATGACTGGAATTTGAGAGTGAGAGATTCAGTGTATTCAAACTAAAGGGGAAGGTGTTAGtgctaagtaggaagagaggaggagatgtcaggacagagaaggtagacactgatgacagccatgcctgtcagtg
s HiC_scaffold_1 131705904 910 + 233722169 GAGTAACTAGTGaagtaaattct-gttttaataCACT--------TTATAAGTTATGTA---AACAACTGCCTAACTTAGTCTTTAATATTGAGTTTTTGAAGAGTTTGAATTGCTTTAACTGGACATGAAGGTA-AGGCAAAGAGGATTTTTTAAATATGCTTAATAGATTGAAAGTAATTTGCTAAGGAATAAACTct--acatttttgtatttcttaggGTTTTCCAGGAGATATTGGGATTCCTGGACAAAATGGCCCTGAAGGaccaaaggtaaaaaaaaaaaaacaagaaagaaagaaaactgaatacGGATATACAGATTTTTCTGATCTCAAGTTTCAATGAAGGG-AAAGCAGATTTTAATAGAACATTTCATCAGAACAAttagaatatttctatatttctgaaatatttggtAAAC-TTTTGAGTTCAGGATTCATATAATTGAAAACTATTTTCATGGTTTCATATAGACCT----------ATATTTACCAATCATGTGAATCATTCCTAGG----------AGCAGATTGAAA--AATGCAACAATTCTGAAAATCCATAGAATACAAGGAATGTATGAGAATTGTCTGACTACT-TACTACATTAGGGCTAATAAGATATCTAGTA----ATTAAAATATAGTATATGGTATTCTGGTGCCTT-TCACAGCATAAGACATCTG--------AAGAAACCTAAGCATTATTTTAACTTCCATTG----------------TAGTGTATTTAAGAGCAAAATGTT--------------ACATACCCAGGCTTTGGCTCGGAGGCTGCTTCGGCATTATAAGCAGATGAACGTAATGAATAAAGGAGAAGAATGGCAACACCTGAAGTCTGGAGGATACACAGGTTATGAAGTGTAGCTGCTGTGGGAAGTGTCAGT-----gtaaacagagaggaaggaata-cAAGTTAAAAAAG---GATCTTAAGAATAGCTATACTTTATAGTG

a score=23930
s chr3           145390885 2718 + 160039680 GCCAGAGTTTTCACACTGAGGTGGCTGCCAAGCCTGGGTTCTTCAC-ACTTGGCCCGGGGATCACAGAGTTTGAAACACTCAGACTGTATGATCAAATTGTAGTTTCTACTTGATCATACAGGCATCAGGGAGTAATCAGAGTTATTTAAGTAGCAAGTATGCCATCTGGTTTGTGTCTTTAGAAGATAGCCCTTAAGTCACTGTAAAGGACAGTTTAAAGCAGGAAGAAGTTGAAGGCAAACAGAGGAACGACTAAGTCTAGGTGATgagctggagagatggctcactagttagtttagagcatagactgctcttatagaggacccaagtttgatctccaaaacccatatcaactaac-----------tcacagccacctgt---aactctagctccagaggtcctaggatacctgcactcgtgtgcacacaccaatacacagacacacaGTCaataataataataataata-------ataataaATGCAAT--------------TGTAAGAAATAGTAAGGGATGTGCCGTG---------CAGGCACTGAATGTGTTTCCTTGCCCAAGCCCAGG----GGTTGGGAAGACCCGGGGCAGGGCTCCTCAGACTGCAGCTCAGCTGTGGGTGTGGGCCTCCAGCTCTATCTGAGGATTAGCAAGAGTTCCTG-AGGCTTCAAATAGCAGACTCACCACTCTGGGCTGGAGCACAGGATGTACTAGTGGAGATAGGCCTGGAGAAATA-ATAAAGATTTGATGTAGAACatttattcatttaacaaatatttattgggtgactctcaagtgggagccactgtactagatcctagatggaacggcctaatctatgttttcaagaactttacaggctGggggctggggaaatggcacaagaggtaaagtgcctatgtactttacagcaagaggattagaattcagatctcaacggccacagaaaaGCACCTGGACTCACTTTCCAGCCATCCCAACCACTTGCCACATCCACACGCCCCAAAGAAATGTACAGTGTAAGCAAGCATGGAAACCCTTCTTATGATAATAATGATTATTAC----------------GCACAGTGAAG-GGGTGCATGGTTGTCAG-AAAGGTAACACTTGGACCCACAGGATGATTGAGAAGCAGCT-GCGAGGCAGACAAGTGGGCTCTGTGACTCTCAGGAAAGGGGAACTTGTGAGGGAGTGGAACCATAGGtattcggaaagtattgaaactaaatgtcacccacggctgatctgaaattcaaatgtaactgtgcatccggtgttttacctggcaaGCTCACCTGCCACCCACCGCCGCCCCTCTGGGCGGTCGGGTTTCACTTCCTTTCCACGGCTGTGAAGTTTGCCTCTGTA-GTACATGGCCCACATGTGCTTCACATCAAACCCTGTTCGGAGTCCTGAGCAGCCTTGTGCCATCAATTATAACCTC--TTACCGTTTCT-CTTGACTCAAAATTTCCCCCTCTTTCTGTTTTTGAAACCGGTTTCACTGCCAATGTTGTAGCTTAGGCCCTCTTCTTTTTTTTTATCCGGGATTTGTGTATGAGACCTCCAGTT-ACTCGCCCTGCCTCCAGTCTGGCATTCCTTCAACCCCACGGTGATGATGCCAAAGGGGGGGGGGGAATTCTATGGAAAGTATACATCTCA--GCTGCCGCTCTTGGGCTTGGTCCTTATGAGCTCTGCAGTGCATCTCTCTGAAGACATGCACGTCTTTATTTTTAACACATGGTCCTCTGCG--CTCCAACCATCTCCTGACTCCTCAG-CACACACTCGTGCTCACCATTACCTTTTCAAGGTT-CCGCTCTAGCCAGACTTCATAAATTAACAAACCACCCTGTGCCGGTTCAGACCTCCCAGCTCCTTGGTTGCAGTTCTTTTATCAGGATGTAA-------CCTTCTTTCC--TGCACTTTCTCGTCAGCCAGCCAGTGTCTG-----GGCATCACACACAACACTGTCCAAG----TTTCCTTAGC--------ATCTAATTTA-----TTTTCCCCCATGTCCCTGAAAAacccctattaaacaattacctccatatattatatctgtttttatgcatatctgcctctctgctagaccacaaggtctttgagaaaagagataaatttattttaaatatattaCAGTGACCAGAATAAAATGCTAGGAATTTCACAACAGGAAC--TTGAGATTCACTGGCTGGTTGATATATTGACTAGCTATGGGGAAAAGTTACTTTGAAGATTTTTTTTTATAAAAAGCAACTTGATAACTTGAT--AAGGAATGTGATGGAAGAGAGAGA----AAAGGTAAAACAGAGACTTTTTTTTATTTAACACAATGTATTAAAATTTAATGGGAAAAATATA---GAGAACTTGGGAGAATTTGCCAATCTA---------------GATGAGTATGAC-------------ATGATACTTATTTTGACAT---------ATAA----AAATAACAGCCATCAATAAACTAAGAT----ATAATGTAGAAATAA----------GGAAGCAAGAAAGACATATAAAGAGTAGTGTTATAGTGTCTCTGGTCTAGCCTACTCTAGCCTTT-GCCTGCTTAGGAAC-----ATAAACACCTTTGTCTCTTTCTTCATTCACGCAATAGttcattcattcagccgacattgaattgcttttttgtgttatgccagg--tgctaagggtaaaataataaCATTATCTAAGAAACATTGGCCTCTTGTGGATGGTGTTCTAGTTTGACAAGAAACATAAATAGTTATGAAAAACTATAAGTACAGTATAAAAG---GATAAgggctggagaaataggtcaatggttaag
s HiC_scaffold_1 131706980 2653 + 233722169 GCTATGACTTTGACACATACATGATTACAAAGTCTGAGATCTTAACCGCTTAGCTTTGGAG-------------GACATTCAG-------TACCA---TGAAGTTTCTGCTTTATCTTATTGGTATCAGGTAGCAATCAAAGATATTTAAGTAATAAGATATCCTAGTGGTTTATGTTTTAAAAGGGAACATCTTATGTCGGTATGCAGGATGTCTTAGG-----------------------AGGGGAGCCATAAAAAAGTGGGGATGAGCTAGAAAAA------Gctaggaaagaaataatataga-------tacAAAGTACCACA--TTCATTCAGTCAGCAGGTATTTATTGGCTGGTTTTTATGTGACAGCCA-TTGTGCAAACTAGAGCTACGCAG--CCT--GATTCTTTCTTTTATGGATGTACAAAATGAC------------TCAATTTTTATGGCAG-AATAGGGCTCCATGgtgtataccacattttctttacccgtTCATCTGGTGGCATGGTTTCTCCTATATTAAAAACCCAAATACTGTATGTATG---------AAGGgtaggagaaggaagggaggagaaggggatgaa---aaaagaattcagatatgttatgtacatgta---tcaactcccctCAAAGAATGTAATCAGTATATGCATTGTTGTAATG----------CACTTTGTAAT--AATgcaatatgtactaataaaaataaaatttaaaagaaacatgcaatatggatatgaaacagt------ttcaaaacaggttagttgGATCCTTGCCGAagttgatacattatgtattatCTTTGAAGTTGTTGTTCAGAGTGTGAGATGTAGACATATCTTGGCTTAACATt-----attagcacaaaacat------------tcttttccagGAACTAAA--AGAAGTTAGGT----------GCATAATTAtcgttatatttatttttctttcttttt-----ttctttaaaataaaacttacaaaa-------cCAATATGGATATGCAGGAAAA-------TATAATAATGATGAATAATACCTACTACTGTAAGTGTACAGAGTGAGGTAAGCACAGGATTTACAGAAAAGGTAGCACTTGAACTGACATGATTAATGAGAAGTAATTCGTAAGGCGGATACACGGGATTTATAACATTCAGTTAAAGGAAACTTGTAAGAGGGTTGAAGtgta-atattt-gaaaatgtttaaactaAAAGTTATTTATCAtctatctgaaattcaaatttaataag------AGCATTTTGTCTGGCAAACCTACCTGTCACCTACAAATCTCTCCCTATATGAACAATTTTccactc--ttctgtctccataaagTATTCCCCTGTCTGTTCATGTTCCACATGTGCTTTGCATCAAGTCCTCTCCTGAAC----AACAACCTCATGCCATCAATTATAACCTTTATCTCAGTTTCTCCCTTACTCAGAATTTCCCCTCTTTGC--CCTTAAAAACCATCCTCCTTGCCAATGTTTTAGTTtaggccctttttatttttcaagc---agATTAGTGGAAGAGG-CTCCAGTTAATTCTTCCTGCCTGCAGTCTGGCGTTTCTTCAGTTCTGCAGCCAAGCTACT------GATGGAATAATCCTTT--ACAGTGTAGATCTCATCACGTCAGCTCTGTGCTTAAGTCCTCCAGTGATCTCCACGGCTTCCAGGTTAAGGcttgttcttctttccttttaatgcAACGTTCTTTACAGCCTTTGTCTATC-----ACTGTGTAGTCTCACAGTTGCATGGATCATCATTCTTTCAAAGCCATCACTTCAGCCTG--TTTGT--ATTATTAAACTACACAGTGCTAGTTCAAATCTCACGCCTTCTCCTCTGCTGCT-TTTCATCTGGGTGTGGATATCTCTCTCCCTTCCGATGCCCTTCTTCAT-------TTAGCTTCTGCACATCGCATCACACACCACCTTTTCTGAGCAGTTTTCCCTACCTCTCTCAAATCTAAATGAAATACTCTTTCCTTGTATTTGTGGAGAAAATGTATCAATTATTTATCCTCATATATTGTGCCTGTTGTTATGCTTA--------TATATTAGACTACgcaatttttaaaagcagaaaccaATTGA-TTAATATAGAGTATAA-GAACAGCCCAATATGCATAACGTATAATGGAAATAACAGTTAACACTGGGTAAATGAATGATTGATTAAATGGCTATAGATAAAAGCTAATTTggaaat--------------agaaacaagaaaaattggTTAAATGAAAGtgatgggaggaaaagaagacagaagtAAAAGTTAGACTGTGGCTTAGGCTACTGACATCATTGGACTTACATGAGGAAGTTAAATGCGGGGACTCAGGAATACTTTCAGGAGTACATTCAGATTTGAAGGATGAAGAAGACAAGTTTGAGTCTGAAGATACTTAGTTTGAGATCCCTTTTTGGTAACATTAATTAGTAGCCAGTAGCAaaccaagatttaaaaaaagtagaaacaataaTATGAAGAGAAGTAAGGAG-----AGAGAGATTGGAGTTGAGATTTCTCTTGT-----TTACTTTAGTCTTTCAGCTGCTT--GAACTTTATACAAACATAAATGTAACT------Acttattcaataattt-ttcatTCAACTTATATTGA---GATTTTCTACGTCAGGCCAAAATTACTAAAGGT-AAATAATAAGGATTTTTAAGTTATGAT-TCCTCCCCTTGATAAGGTTACTACTTAATAAAGCAAAGATATCATCATAAAACATAGTAAGTGCTATATAAAAAATTGATGATGTGTTGTGAAA-ACCTCAGTAGCTAAG

a score=44088
s chr3           145395360 1891 + 160039680 AAAGGCCTTTCATCTTCTGTTCATTTTCTGTCAGTTGACTGAAAAACCCCAAACCAGGATTGGAGACTTGTGTCGTTTGTGGTTCTACTGACTGTGGAGTTCGCTCTGGGTGTGTATTTGTATACAGATACAAA-CATTCTTCAGTAAGCCTTCCTGAGAGACACTCAATTTGGCAATCTGCTTTCAAGAATACCATAACATCAGCAAAACCACATCCTCTGCTGGTCGCTGGAGAAAGTACGAATACGCAGTAAATATTCTCTGCGCTCCAGTAAACAGAGGAATACTGTATCTGTTGCTCAGGTGGCTTGTGTTGCTGCTTTGGCTGTGGAATTGGGGATGCTGAGACCAGCTGTTACTCTGTCTCGTATTACAGTCCCAATAAGCTTACAGAGGAAGCCTAGTTTCTGTGAGATTTTGTTGTG-AGAACATGGAAATAGTTCTTGCCTTGACTAACCCCAACATGTCATATGTTTATCAGTATAGGGGGAAGCCAACTTAGCAAGAAAAAGATGCATGACTCTAGATCATTCTTCTAGAAGACT------------------------TTCCATCCACTAAGTCAAGATTTTATATGCATATTTATTGTATCAGCGGCTCTGTTCTCTAGGCAGTGTTTAGTCAGCGGAGAAATATTTATTGAGTTTGTA------------------------TATTACTTGTAATATATTAAGCAGTAACTAGAAAACGAGATTAAGACATAATCT--------TCTCTGTACTAGGAATTTATAATCTTCAAGAAACAT--GTCTTCCTCATCGGAAAGGTTAAAA--------------GCAGCAGGGGATAAGTGAATAGCTAGGAGTTT----TAGAGGGTAATCGGTGTGGCCATATTTCTCGGAGA-TTCACAGATGAATTGGGATT-TGAGTCGAATGGGTTAGGTTTAGTCAAGTGG--------------AGATCCTATAAAATAGCTACAGTAAAATCACAGCGCAGAAAACAGAGAGAGCTGT-CCTACTCCGAGAGGTTAAAAAGCAAATTGCGACAgatattatatgtaaaaatataaaatcgaaacatataaaccacaatcctgaccaacctgtagaaaagtggtatgtgtgtgtgtgtgtgcacacgtgtgcatgtgcacgtgtgcacgtgcataagcatgttcatttgtgtaaaacccaCAACATAGAGTGTCTTTCTAACAGCTTCATTGGTGTATAGTAAGTATTATAATAGTTAACATATGTGTGTTGGttgttgtagggcagatctccagaacgttttcatcttgcttgtttaaagt----acccactaaaaagcatctcttggttatttc--agttccagg------------caaggccaatttgaacttacatgatcgtgtgtactttatataccttaaataagttgagtcctgcagaatttgctgttttgtgactggctaactgcattagcataatgtcttcaaggtttatccgtctcgaagcctgtgacaacagttcct--ctttttaaagcta---aaaattgcatcatttgtatataacacattttctctactcgctcatcagcaaacggatgatagagtagccagactcttggctattgtaaacaatgtc----------------attagattt----ttgagagtctgtttgcaattcttttgaatatataccccgaaTCACTTGCCCAAATGTT--AGTGGGCTGTGTGGAGCTTTGAGttgagctgtacgagtccccgatacact-ttgatttcaatgcaatatcggatatgtggcttgcagacattttctcagactctgcaggctgccctttgagcatgttgctcatgcccttg-gtacgcaa---gctctcagtgtgagatcatctagcttccttatttgcact---ttcattgtttatgctttgatgg---------cattgacagcagcagcattttgacatttttcccatattttcttctatatgaacaatggtttgagatctcatattcaagcct
s HiC_scaffold_1 131712225 1921 + 233722169 AAAGAAGTCTgagtttctgttcattt-ctgCCAGTTGACT--AAGACCTCAACGTAGGGTTGGAAACTTGTGTTGATTATAGTTCTACTGATTGTGGAGTTGTCtgtatatgtatgtttgtatacAGATGCAAAACATACTTCAGTAAGCCTTCTTGAGAGCCACTCAATTTGGCAATCTGTTTTCTAGAATCCTATAACATTAGAAAAACCACATCCTTATCTGCTTACTACTGAAAATAagagtactcaataaatattctcTGTTCTTCAGTAAATAGAGGAATAGCATATTTGTCACTGTGATGGTTTATGTTGTTACTTTGGCCATGGAATTGGGAATGTTAAAACCAGCTGTTATTC--TCTCGTATAACAA-CATTATAAGTTTTCAAAGAAAGTCTACCATTTGTGAGATTATGGTGCATAATTTATGGGAAAAGCTCTTGCACTGAATCACTACCACACGTCATATGTTTATCTCTACAGAGGTAAACTAAATTGATAAGAGGAAGATAGATAATTCTATATGGTTCTCCAAGATCACCTCAACTCAGCCCTAAATTTCCACGTTCCATCAACCAAATCAAGATTTTATACACAACTTTCTTATATTAACCATTTAAGATTGTGTGCAACCTTTAGTCAACTGAGAAATGTTTATTGACTCTGCATGATGGCCAACCTTTTTACTGAGCTATTATTTGTACTGT--------GTAAGTACAAACTGCG--TGAGTTTTGATTTGAAAACAGTCTGTGTACTAAGAATTTATCATCTTCTGGAAAAATGAGTCTTCCACTTGTGAAAAGCTAAAAAGCACAAAAACTAGGTTACATATGATAAGTAAGAAGTAAGGAGTTCAGAAGATAGAATAATTTATCTGGCTATTTTTCTGAGAGACTTCATtgaaaaattaagtttgtgagtttgatagGTTGGATTTGGCCAAGTGGAATCATGAGGTGAAAGATTCTGAGCAacagatacaaaatgaacacaagtCAGAGGGCAGAAGTAAATCTCCCTAACTAAAAAAGGTAGGAGGCAGATTATAGCAGATATT--------AAATATAGAGTTGAGgaatttaaa-tacaa-----ataaatccatggaagattttt-tttgtgtttgtg-----------------------atGAAGAGACACATAATTGGATCCA-TTGTCTTAAACTTGC-------------------------------------------Cagtgtaatatttaaaatgtatgaatatttt------gggcag-----cagaactttttcatcttgtGTGAGTAAAATTCTGACCCATCAAGGGACAGCTCTTCATTTTCTCCTGCTCCCAGGCCTTAGCAACTACCATTCCACTTCCTGTTTCTATGATT---TGACTGTTAGATAACTCATGTAAGTAAAATACTGTGATATTTGTCCTTCTGTGACGgattgtttcacttagcatagtgTCCTCAGTGTCCACTTGTCTTGTAGCACAGGACAGgagttcattcttttttatggctgaataatattcaatTGTTTgt-tatactacattttctttagtcGTTCATCAACAgaca---tttaaattatttgcacTCTCGGCTGTTGTACATAAAGCCAAAAGGAACACAGGAGAGTAAATGTCACGTTGAGGTCCTGTTTTCCGTTCTTTTAAGTACAGA----AATTTATTTGCCCATATTTTTCCTTGGGTTGT---CATTTTGCCATTTGCTTTTAggaatttctttgttgttgttgctattaaGCCCATATGAGACACA-GGTGTGAAGACATTTTTCC--ACTTAGTGGGTTACCTTTTCATTCTATTCATAGTTTCCTTGCCCATGCAAACTACTTTCATTTTGATGTAgtcccatttgtctatttttaatttgttgactGTTTTTGGTGTCATAGTCAAGAAATCATTGTCA-TGATAGATTTATGAAGACTTCCTCTTGTTTTCCTCcaagagttttatagtttcaggGCTCATGTTTAAATCT

a score=24589
s chr3           145398371 2221 + 160039680 TAAAAATGCAAGTTACCAGGGCACATTTATTCTTCAGTGCCTTGGAGTTACTTGCTACAATTAAAAAGGATTAAAAAAAAAACTTTAATTGTGACAGAAACATTGTAA-CAATCATGTGAAATAAACTT---AGGAAGGTTGTGCATGAAACTCTTGTGAGACGTTGCACACTTCCGACAAAACCACT------AGTAAAATGTC---ATGCTGACCGGGTGTGGGGTGGTG-----CTGGGTAAACAGAAGACCATTTGTACAATTATTTTGAACAAGTTTTCATCCAGCAAGCAATCATTTTTTAAAAATGTTTTATTGTTagccaggtgtggtggtgcatgcctttaatcccagcactcaggaggcagaggcaggcagatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaACAAACAAAAAAAAAATGTTTTATTGTTAACAGAAGAATTTAGTAGTCTTTAAAAGTCATGGTGATGAGGTTTATTTCTTCTGCAAATTACCCTTCTCATTTTAGCAACTTGTGTGATGGAG-------TTGAAGGACCATTTATATGAACAACAAATGCTGCACTCTACTGATCTCTCAAAaga--------------cgtctg-----ggattctttg------tgtaatgtgtatatttactaacagaatgataatagttatgccaattgctt-taaacaaaaacaattt-tccaaaaagacgtctgaaagttgaaaaataa----------------caaaaaaaattatttgaaaCCTAGCACCTT--CTAGATAATTTGTGATTT--------------TGCTC---AGTTTCAATCT-----------CATCTCACTTTGATA-TCTCTTAATGAGAAATGGTACCCAACAGTATT--CCCACCTCTGTGGTAATACTGACTGATAAAAATA--AATCAGTGTATAATTTCTGTCTTCTATTTTTGCATTACTTTTACAGGGACATCTTGGAAACAGAGGGCCCCCTGGTCCTCCAGGTCTCAAAGGAACTCAGGTATGGAGGAAATTCATGTCCAGTCAGCAATTTTTCAGTTGGAATTTCCTTTTTTATTTTTGTGACACTTCAGGTTTTTTGCTTAATGAAAAGAATTTCCTTAGCGTGAGCCATTTTTT-CTATTAAGGATTTCAAGTTA----TTTATATTGGCACTTATGGG-TAGAATTTGGATTTATTTTACGGAGCTCC----TTGGTGATTTATTTCAGTAGTCGCCAATGAAATGTTGAAGAATTTTGTTCTGAAACCAGAACGAAACTTATCTGTACTAGAATTCATGTTTATTACTTATGACTATTTTATATTTGTGACTTAATAAATTATATTT-AATGGACTTGTGAATTGAACAAAATGTCTGTTTGTGAAATA-----------------TAAGGACATCTACACGTGCAGTCAAGAGTGGTAACACAAACTAATAATATCAACTATTCACTTAAAGGTGAGAAAATCAGTACATATCATCAACACTTTTGTAAGGGGAGCACACTTGCTTTTTATTTCTTCTTGGAAAATAATTTCTAGAACTGGTTTTCTTTGATTATTTTC--TCTCTGTTCTCTTTCCACCATGTAGTCTTGACTCTTACGAAAATATACCGGAATTTTACATTTTGTG---------ACATTATAGCTAGTTTGACTAAAATTTAGTGAAGAATACAGTGTTTGGCAGTAAGCATCATTTTGATTAAGATCTAGTGTGCTCT-------------------------AAAAGCTACAT-----------------TCAGATTG------GATTAGATGTGCTTTTGGTGTCTAAAGTCGCAGACAAAACTAAAATTTACAAACTTGAGCCTTCagtcaggtatggcagcaccacctaaaatcccatcatttgcaaagctgaggcagga-----ggatgacaagtctgagg-----caagcctgagctacagaag------------------------agactcaaacttaaaagaaGGAGCAGGAGGAGGAAGAGGGAGGGGAAGAgaatgaatgaatga---------------atgaatgaatgaatgaaGTACCAAATGGGACT------GGAGCAGATTCCGTATAAGTGATT--GTGAATATACTGTAAATGTGTGTGTTGGCTTCCATCTGCCCAGAACAGAGTTGCATTTGAATTATAGCAGAACTTTTA-TTGTATCCCCTAACAAGCTTCAGATTTCAGAATAAATGCAACACATAAAGATTTCTGTTTTTAAACACTA---TTTTAGACAACGATTTGTTCTGATTTATTTCTAAGGGAGAAGAAGGACCAATTGGACCCTTTGGAGAACTGGGATCTAGGGTAAGTATCACAAGAGTGATT
s HiC_scaffold_1 131717189 2119 + 233722169 taaaaatcaaaatcact-tGGTAGATTTGCTCTT---TCACTT--AGTCATTTATTATagctaaaa-----ttaaataaaacctttAATTGCTATAGAATCATTAAAAGCTATAATGTAAATTATAATTTCTAAAAGAGATTTACTGAAAACTTTGCTGACACATTGCATGGTCAGGACCacagaaatgaattaaaaaaaatgtttctgtgcTGAGCAGATGTTGTGTGATGTTTCTCTAAgtaga---aagattatttttatagttatctTGAACAAGTTTTCTTTCAGAAAGCAATTA-----------------ATTATTAGC-----------------------------AACATTCA-------------------------------------------------------------------------------------------------------------------------------TTGTGTTTAACAGAAGAATTTACTAAT----AAAGTTCAGAGTGCCAC------TTTCTCCTGTatattgcttttctcttcttacCA----GTGTAAAGGAGAATATGTTTGAAGAACATGTAGTATGAATAATGAGTTCCAGACTCTGCTGGTCCCTTAACAGATATATATTCCCCTCCATCTGTTTTTAGACTTTGTGAACAtctgttatatatgtatatattgtcaGATT------ATCTGTTCcaagtttttatatttagaaaaaatttgtctgagaaaatatttgaaagttgaaaaatgGAGTATTTTTGAACCTTCTTAACCTACTATGTCAAGTTTAacacactgtttaaaaaaatcttgttttccaCTTTCAGATACTGCCTTATAGTTTCTATTTGTCCACCTTTCTATCTCATTTTGATAGCCTCTTAATGA---ATGGCACTAAATAGTATTTACTCATCTCCAGATTAATGCTTATTGACCAAATTGTTAATATGTTTATAACCTTTACTTTGtctgtttatattattttaatagggACTTCTTGGAACCAGAGGGCCTCCTGGACTTCCTGGTCTCAAAGGAACTCAGGTGTGGAGGAAAAGAGTATCTATTCTACAACTT---AGATTCACATCttccttttagtttttcaaaactgCA--TTTTTCACTTGAAGAAAA-CATTGCTTTATTGTTGACTATTTTTTGCCATGAGGGATTTCAAGTTACCATTTTATATTGACAGTTATGGAATGAAATTTTGAATTACTTTGCAGGGTTCTGAGTTAAGTGATTTATCTCAGTCTTCTCCAATAGcataataaaaaagg-----atgaacTCAGCATTTCACACATATGAAgtagaatttatatttattt-----------------tttgtgagccagtaaattatattttaactaaATTGTAATTTGAGCaagtattttgtttataaaataagtaATGTATATGATTTTAAGGATGtccatacattttttttaaaatg-tgatattgaCTGgcaatatcaaatatttattagaagGATAAAACatcaatatatttaataaatatgtatacagataaaatataaaaaatatttattc--tcttaGAGAATCCTTA-------------TGTTTGCCTATATTCATCTTCAGTTTCTAtataaccattttatttttattgttaaaagaATACATTATAATTTTATGCTTCATACATCATCATACATGACAGCAGATTTGAGC---------CTAAGAATATTG-GTTAGTCAAGA--------TTTGGATAGGATCTGATGTGCtgttgtctttctcaggtttaAGACAGTAAAAACCTATGTGTTGAGAGAATGAAGTATCAAAATGTACAGAGAACAAATATGTTTCCTGTATGCAATTTTTCA----ATATTTCAATGTGTA---CTGA--TTTCTGTCTGTTATG--AACTTGGTTGAGTTTCTC----TCTGTGAACCCAATAAACGATCCTTAAATAACAGTCCCAGTGATtcctaatcctaattttttgatatcttactttcttttacttttctccaCTCCCAGTTTTC---------------------------------------TGACTG--TGATTTGTATTGTCTTCCATGTGAAAAGCAACCACATAGCACATGTCTCTCTTCAGGGAG--------ATGTGAGATAttcatagaaaatattaaaaatgtatggcATGAT----------ACAGTtatgaaatacaagaaaatcacAGCATTATTTTCAGTCACATCTCAGAAAtgacttcagatttcagaaaaaaagaa-----taagggtttaaatttttaaagactaaTTTTTTAAGTTCTAATGTGTTTTGATTC--TTTTAAGGGAGATGAAGGACCAATTGGACCCTTTGGAGAACTGGGGCCAAGAGTAGGTATCATATGAATAATT

a score=15219
s chr3           145404163 1009 + 160039680 ttaccatttctcccagctgcctctgcggcagccctaa----gccataccctgggcatccctcac-tggattgttgcagcagacccccctttacactctttccttctgtccttccatcgggggaat--ctgtcaaatatgcatcatgctggatttctt-ctcaaggctcccctaaggtttcctgcctcgctcagaatgaaag--ccaaataacttactgaaacttattatcaggtctgatgtgacccagtttcctattc-cccattctctttcttgacttcatcgtcttctccgtcctctccatctgcatccccactccagctacact-gactcctcatgcttgat---atgttccatatggtcttc--ccagagtgcctttg------------cctctacctggactgtggttcctgcaatgtccacatag--tttgctcctttttaaaatctgtactgcagtgcca-gtctctcaatgaagtcttccatagaaaccatacaaaaa--------------ctacaagagttgatacctcccttccctgcttaatttgttgtc--------------------ctttatacttaccactgcttaataggacatgtgtgtatgcatgtgtatatgcatatgtgttcataatacatgtattatgcattttaaatttgtta-ccatcttcactgaagcatac--gttctatgagggcagatata----acgttctctctatcctcacaactgaaaacagtgtgtgacatattggaaacactccagaatttttaatctgagtggttaatgaatATGACAAGGG-----CATTGGATA-TCTTGAAGTTGTCCATTTCATGGA-ACACTGCATTTCCTAAACGTTAGGACACCTTGGCACCTTTATACATGATGATTACTAAGTATATTTTTATGCTAATTACCCTTTTTTTCTTCCTCTTTTAGGGAAAACCAGGTCGAAAAGGGTATATGGGTGAACCAGGGCCAGAAGGCTTAAAGGTAAGTGCCTaaagtttgaaaagttgaaaagtttgaaaaatttgaaaaTACAGTCTTTCAAGAAGATAAAtctat
s HiC_scaffold_1 131720336 1013 + 233722169 TTGACATTTCCCACAGGCTTCTCTGTTACCACCATGACCTATCTATACCACAATCATCTCTTACCTGGATCACTATAGTAGACTAA---TTGGGCTCCCTTCTTTTGCTCTTGGATCAAAGTGACGCTCATACAGTATGCAtcacaccatttttttttctcagtgctaATGAAAGATTTCCTGACTCACTCTAATTTAAAAGTCAAAAGCATTTACTGTAATTTAC---AAGACTCCACACAACCTGGTTTTCCAACCACCTAATACCTTCTTTGATTTAA--ATCTTTTTACTCATCTC---------------TCTAATTCTACTTGACGTCTCATGGTTGCACCAGTATTCCATGTGCTTTGCAGCCACAGAACTGTTAAAACACGGAATTCCTCTGCCTGGA-----ATTCTTG--GTATCCGTAtaacttttccttctctttaag-tCATTACTTGGGTGCCATGTTATCCAGTGTGTTCTCATATGGAAATCTTAGAAACATTTCAGCAAAGCTCCTATAGCACTTGgtatctctctttcttccttaatttgttgttgtttctctctctctctctctctctctctctctctctctctctctctccatatatatatatatatatatatatatatat-------atatatatattatt--ttttagttttatggtCCACATTCCACGGAAAATACCAGGTCTCCAAGGGCAGATATATTTAATGCTTGCTCAGTCCCTAGAATCTAGAACTATATATGACCAGCAGGAGACAGTCAAGTATTTT-AACCTGACTGGCTAATGACTGTGATAAAGTATGtttatcaaataattttaaaatatttcattctgtaaatattttatacttcacAAATCTTAGAA---------ACTTTCAGAAATCAGAACATCCAAATAAGTCT----ACT--TTATCCTCCTTTTAT----CTTCTAGGGAAAACCAGGTCAAAAGGGATATGCTGGTGAGCCAGGACCAGAAGGCTTAAAGGTAAAGAACCTACCTTTA---------------TTAATAGTTTTAAggtataat-tttcaaaaagacaaaagtat

a score=20136
s chr3           145408375 600 + 160039680 TAAACATGTTTTTTAAATGACAGAAAGTAATGAATCAGGGACTGTGACTTCAATATGTAAACAATTATTGTTTGAATAAAAGTGGGGCAAAGGCCACATTTCACAAAAAATTCTATAAATAAGT-TTGCATAACTGAGATTGCTGTTGCTTTTTT----------ACTAGATAATTATGTAAAATGGAAACAGAAGAA-GCCACGATTAATGTTGTTGACAAATAGT-CATTTCTGCAATTTTGTACTCTTGATCAACAGGGAGAAGTGGGAGACCAAGGAGATATTGGGAAAACTGGTGAAACAGTAAGCTGGTTTTCTATGCTCAATTTTTTATTTTTCACCATCTGTGTTTCTTGGGAATTGTGTTAACCTTGATGTGTTAGCTATGGTTGTGTTAGCAAGCATTGGAATAGAACTTATCCACCACAGACTTACACTCCTATGTGATGGTTGTGTTGACAAATGAAAGGCTACAGTGCAAGAGAGATGTGGAGACAGCCCAGGCA---ATGTCTTCATTGTTTTGAGCTATGTTTGTGGACTTAGGAGCATCTTTCTTGTTAGTATTTGACATTCGATTTCAGTTCCATTAGTTTCAGTCTAAATTTGACCTT
s HiC_scaffold_1 131723876 598 + 233722169 taaaagcatttataaagtgactaaaaataataa----gagaatgtaatttaagaa---aatcagttattatttaaatgaaaatgtcagaGAAGCCTCATTTCACAGAAA-TACTATAACAGAGTATTGAATCACTGagatttcctttacatttttccaTATTATGACTagataattacataaaa-ataaataaaagattgataggggtaattttgttgaaaaataattcatttttggaATTCCTTGTCCTTG-TTAACAGGGAGAAGTAGGAGATCAAGGAGATATTGGGAAAACTGGTGAAATAGTAAGTTTGTTTTATGccattactttcatttttaaaattatctgtattttt--aGAATCATGTTAACCATGATCTGTTGGCTATAATCATGTTAGCAAGAGTCAGAATAAGTTTGATTCACCCCAAATTTAAACTCACA----ATGTTTCTATTGACAAAC-AGAACCTGctatacaaaaaagaaat-aagaaaaagcagtCAATTATATTGTCATCATCATATATTATATTTGTGATTTCAAGAGCATTGTCATTTCTAACACTTAGTATTCAATTTTAGTTCTAATAAAGTCAATGTAAATTTGACCTT

a score=22310
s chr3           145412065 1909 + 160039680 TTATTTGTCAGGAACAATCTGGGATATCTGATGTCAAAGAATAATTCCAATTCTAAGAATTCATGACTCTCTTCTAGGAAGTTTAATATGCCTGCTCTTCCTCTCATCTGCCAAGTTGGCAACTTTTCCCTGGCCCTGTTCTATTCTCCCTACATCCTTCTGACGCTGGTGTGAACAGACCAGGCATGGttttttttttttttttttttttgttttgttttACATAGttaggtttatatgtgtgtttccatgtgggagcgtatgcacatgcgtgcaaatgcttaaagaagccagaagagggcgacagatcccctggagctggagttgttctttatgagctacctaacatgggttctgggaacctgactagttatctttaagagcatcaagtgcttctacccactggacATTAGGGGCCATGTCTTCCTAGCCATTGCTGTGAATAGACTGATAACTTCTATGGATTTTTTTTTTATTGTTGATGATGCTCAAAGCCAGGCAGGCATGTTCTTAGAATGGAAAAGTGGTGGTATCTTTGGGGAAACATCAACAGTGGCTCTCTAGAATCTTCCAGAGCTCTGTTACCTTA-AATACAAGATGTGAGACTATTTTTCCTTAAAGTATCCTTGATTGCATTAATTTTCAGTTATTACATTTCTTCCCACTTGGTGACATTCA--TGACTGTCTTATAGTCTAGTCACTCTAACTTATTTCTTAAGCTGGAGCTTCACTTACTGGATTTTACTTTATACATTTCTTA------ATTTACTG----ACATATGGAGATTTATCCC----CTGCTCTCTCCCCCATGCTGTGCTAAATGATGATAAATGACCAGTGAACACAGAGAGAAACAGGAAGGTCCTGGATTATCCTCAAAATGACGTACCTCACCTTTCTTAATAAAATCT-------TCAGAATCAGGGATGCTGTGATGGGTGATCCCTGGATGGCTTCTAAGCAGGTTACTCAAAGCCAAAA-------------CAGGAGAAAAACTAAGGGAGAAATAGAGA------CAAAAT--TTCTGCTTATTAAGGACCCATTCTCTATATTAATATT-------CTCTA----------------TATTAATATTAATAAAGCGACCATTCTGCACCCTGTTGCTGTGGAATGTGTAGAATGTATACAATC-TGTCACCT-GTAAGCCATGGTACAGAAGGTCAAAATCCAAGATTCTAGTCTCCAGCTCCTGAGTGCTTTTCTCTTCACAGAGTAACCACCAAACTGTCC---------------------------------------------CTGCT----------------------------------------------------------------------------------------TTAAATGGGACCTTGAAA--------TATGTCCTTGGGAATAAACAGCTAGGAAGATCTGAGTTAATATTTAGGAAAAATTGTAAGGAAGAGCAAACCAAGGTTTTAACCTACAATATCCTAAGCCAACCTGGCAACATGCTTTTAAAATATTGTCAAATATTATTAGTTTGCAAGGGCTATGGAAAC---TTATTTATAATGGAAACAGAAACGATTT-TGGAGGAACTGGGAAGTG-TTTCAGAAGCGCTCA-CATAAACCCTCACTTGATAGAGTGCCTAG---GGCTGTGCTTGGGTAAAATTACCGTGGAA-TTAGCTTGATATAAATCCATTTTATTAT-----GTTCCAGGCTTTCCCCCCCTTTCGTGAAAGGGGAAATTGTTAGTTTTAAAGGGACCTAC-TAAATCAT----AAAAGTCCTGTTTCCTTAAAGGAACAGATCCAGAGGCTGGGCGCATGATCTAACCAAAGAGGTAAAGCGAA-------TGTCACAAATTACCTTGGACTCAGCACATTCTGAGTCTTACTGTCATTTTCTTA---------------TGTGC--------------------CTAGGACACAGCTGTAAATACTCTGCCAACCTCCT-----GAATGGCGTGAGTGATGTTTCTTATATAATGGAAAATACGTAAGATAGCAGAATGGACACATGGTA----TCCTCA--GACGGGTCTTTA-TTGAATATGTTACCAAAAAATAGGCACCCATTATTGAAAACTTGTGATA
s HiC_scaffold_1 131727854 1883 + 233722169 TCAGTTGTCAGgcatattttgttatatatgatATCTAAGGATAATTT------TAAGAATCCTTCACATTTTTCTAAGAATTCTAATATTTCTACTCTCCTCCTTATCCATTAACTTGGCTTCTTTTCTCTCGCTCTTTTCTAGTTTCATTATGTCTTTCTGAAACTGGAGAAAGCA--------------------------------------------------------------------------------------------------------------AAACTAga---------------------------------------------------------------------------ctatttttgaga----------------------------------cagtgactTCATTGTTTTCTCTGTATGTGTGATAATgatctttatg----ttttctttattgttaATGATACTGAAAACCACACAGACATTTTCCTAAAACAGGAAACTGAAGATTGCCTTGAGAAACAATCCACAGTGACCCTC--AGATACTCAAATGGCctgttattttatattataaaatacgA-ACTGTTAGCAC--AAAGCatcctttattatattaaattttgGTTGCTACAATTCTGCTCACCTAAAAAGATTCATGTGATTGTTTTAAAGTCTGACTACATTGATTTATCTCTTCAAATATAACCcaaatgatttaattttaacTCATTTATTTCTCAAGCAAGATTTCCTGAGTAATATATGCCATAGCCTCCCTGTTTTACTTCCTCCCATGTGGTGTGCCA----ATGTTAAATGACTGTTGA--ACAGATGGAAAGATAAAGGCCACAAATAATCCTCAAAATCAAGTA-GtcaattttcattataaaatctgTGTGCCTGAAAACC----------TGATGGTTGATTCAAACCTGGATTATAA-TAGCTTATTTAAAACCAAAAAGAGGTTtaaaatcatagaagaaaattaaaaagaaataaatatatttttaaaataaatctatttattGAAAATCTAGTATTTCATTTGACCTTGAGCTGACCTTAGTAAAATaagtgttattattattattcaataAATGAGGAGTCTGAAATTCATT------GAAGTTATATAATAGACAAATTCTTATTAGCTAGCAAGTCACAATTctggatttc-aagttcaagattTCTATATCCACTTCCAAGGCTCTGTTCTCTGCATCATAGAATCTTCAATTTGTCCTGGGGACTGAAGATTAAAAATCATCCTAACCATTTATTCCCAGTTCTGCCGCTATAGTACCTGACTTCTCTATAACGTAAGTTTCCTTTAGTctaaaatagtaataatgattattattttcCATGGTCTTTATGAGAgtttaatgatatatttaaagTAATCTGTGTGTCCTTGGGGATTAATGGTTAGGAAGGTTTG---------------AAAACT--------GGGCAAATAAAGG-TTTACTCAGTAACATCTGAAGCCAAACtgtcaattaaatttttaaatattgtcaaaTGTTATTAGTTTCTAAGAATTATGGGAGCAATGTATTTATAATGGAAACAGGAAAGATCtgtaaagggaaggaaaaaagattttgaaaatgttcAGCATGAAACATCATTTGACCAAGTGGCTAGCGCTGCTGCTCTTGGGTAGAATTAACTTGCAATTTATTCTGATACAAATTGATTTTGCTCTAATgagtttcataattttcttt----------aagAGTAGAATGTTGGTTTTAGGGAGACCCACTTTAATCATCATGAGAAGCCATATTTccttgagagaaagaaacaagataaaGGG---ACCATTTAGccaaatagaaaaaattaagtaaagTTGTGTCAA-----CTGCACCTCAGTAAGCCTCTAGTCTCAGTGCCATTACCTTGAAAAATATCGTCTACTCTGCACTGCTTTTAGGCTTTACCGCTACAACACAGATGCAATTCCGTTGCATTTCTCCTACATAGAAAAGAGT-AGTAATTTTTCTCAGGGAATggaaagttattaaa-----aatatatatccataGCATATTTCTTCATCAAAAAATCTGTACCTGAACGTGAT----AAAGGTAGCTGCCATTTATGGAAACCCTATGATA

a score=20930
s chr3           145417345 1104 + 160039680 TGTTTTTCAGAATAGAAAGGTGAGATCAAATCTGGTTCAATGACTTTCTTCGGGACTTAAGTGTTAAGCTGGAACCCAGGTCTTGATTGGT--GGCATAGTGTATTGTCATCCCCCCCCCCCCCCACACACACACACACACACTCCATTATCAGCTGCAACCATTTGGGGTTTG--TGGGAGTGACAGAAA-CTTGAGAGAGCAGATTTCTCTTACTCTAATTTTGTCTTGGATAGAACTCACAACTTGCCTTTCCTATAAGGGTTGCCTAAAACAGCATCCAGAACTAATTTTGTTCTTCATATTTGAAAAACTACTCTGGGCTCCTAAGTGCACATCCCTCTGTGAACGGGCCTGCTAGTTATTA--GTCTCAGGGAGACCGCACAGTGAGGAAGTTATTGCAACACAAGTGTCGCTGCAGGAGAATGTCCTTTATTTCTCATCCAACTTACTTTC----TTTAAAAAAAAAAAATAGCCTGAGTTGAATAAAGATAGGTGGCAGCTCTCTGTCGATACTCACATTATCGCCTTTGATTGATTACCCAGAGGCTCATC---------------GTTGGCCGCGCTGCCAGGCAAGTTTGGG---------ACAGCATGAGTGACCCATTCCTTTCTCGTGTTTCCCATAGCACAAGTGTGACTACCGGCATCTGCTCAGAGGACATTCCAGGCATAGCCTCCTGATCATTGCCAGAACTGCCTGGCAATGCTAACGCCTCTCTCTGAGCTTTTATTTTATGACTGCACATTCGCTCCTAGAGAATAAGAGTCAGGTAGCTGATGGGGAAATGTCAGAGCCTGACATTTCCACTTGAATACTTG-GCAGACCATCAAGACACTCTTGGTGGGGAACCTTATGTATCCATATGGCAAGAGGCTGGAGTAGAAACTCTGTGACCCAAGA-TAGAC--CTGCCCAGTCCCTCAGGAACCTATAAAATTATGAAATATCTGTTCATAGTCTAAATTTAATTGACCATACAAAA----ATATGTGTTCTTCAGGGTGGC--ACATGATATTATGCTTTCAAGTAT-TTTGTTGACTAAATAAAAGAGTATCTATTTTATGGCATTTTAATAAAATATTGATAAATGTAGGATTTTCATCAAATTGTTTTTCTTT
s HiC_scaffold_1 131739065 1043 + 233722169 TGGTTTTAGACGTGGTAAAGTAAAGCCAAAT-TGGTTTGACAGCTTGCTTCAGAATAAAAGATCTAAGATGGAATACCAGTCTTTAGTAATCCAACATGAAATGTTCTTATTTCCTT-----------------------------ATTCTTAG----AGAGATTTGGGGTGAAACTGGGAATGTTGGGAAGCATTAGCCAATAGATTT-TGTTGCTCTGATTTTGTCAGGCAGAATACTCAAAAATCACAGTCCCTATGCGATTTGCACGAAATA-TATACAGGACTAATGTAACACTT-ATATGTGGTGTACTCATTTATAATCACATATGT-------TGTGTAAACAAGTCTGGTATATACAAAAGACTTAAGAAAACACTGcatttaaagtatt-ttacaaCTCAAGTGT--------------GTTAACT-CTTCTCAttcaatttacttttattttttaa----------tagctaaatttcAACCAAGATAGGTGTTAGC-ATATATTGATACTTAGATTATCATCTTTGATTTATTACCAAGATACTCGTTCAAAAGACCAACTATGTGAACAACATTAGCAGGAAAATTTAGTGAAGGAAGTATAGCAGAAGTTGCTT-TTCCATTCTTGAGTTTCCCGTAG-GTAAATGTGAGTGAAAATGTCTGTTGAGTGGACATTCCAGATATAGTCTTTTGATCACTGTCAGACCTTCCTGG----GTCAAAACTtcattctgaattttcatttcatgactgtgtgcttgatTTAAAAGAATCAGA-----------------GAATATTCAGAGgctaaaatttataatttctcaGTAGAGCAGACCATTCAGTTGTTTCTTATAGGAAAATTTGTGTATCTATATGTCAAGAACCTGAAATGAA---TCTGTGATCTTAGAGTAGACTGTTGTCCAATCAATCAGGAATTTCtagaatcatgcagtatttgtt-aTGTTCTAAATTTaactga-aatataaaacattatatgTATTTCTCAGTAAGTCCAGCATG-CATTATTCTCTCAGATATGTTTGTTGattaaatag------atttattttatgataattt-ttaaagttttaatgaatAGAGGATtgctataatattattttttctt

a score=27128
s chr3           145421673 1421 + 160039680 TCTTCTTAGAAAATGGCGTGACTGTGAAGACATAGTGCAGGGAAACAGATCCTG----TGAGAACACCTGTCTCATTTAGTGCTTGAAAATGGAGATTTTTTTTTTTCATGTGTGGCTTAACCTTTGCTCCTCCAGTCACCAAAAGTCCATATCACATTGA--TATACAAAGTTGTCGCTT----GAAACAA---AGTTAAAAAATATCAGTGGTTTTCTACAGTGGGTAAAGTC-----TACACTTGTCATGATGAGATAGCTTCGA---TCCTTTGTGTAGCTTTGTAAGGAAAGCAAAACCCACTGATAGAAAATAGTGTAGCTAAGAGTAAATCAA--ATGCAACTGAATGGAGTTCTACA-----------CTGTGTGTTGT----AGTAAAATTCA-GAGTCTCCAGGGTCTGCCATCCTCTAT-CCTGTTACACAGTTGTTTACATGTTGAAGA-TTTGGACTCTTCTGAGGCATTCAAACACTGTG--TAAGACACAGTGACTTTTGAAGATAATTGTTAAGTATAGGAACCTTCTATAAAA-TGTTTTACAGCACCTT--TTTCAACTAGGAAACATTCTAATTT---CACATTGCTCTTAGAATGAATCAGTAGGATGTGGTTA-CTTAAAAAAAACAGAAGTAAAAGACTCTAAAGTTTTTACTGACTTTGGGAGGAAAAATAATATTTCTTCTTGCTTCTAAAAGTCGATTTATTCCACATCAGGCTTTTTGGCCCTCCGCATTTTGGCTTTAGTTAACAAAATCTTTAAATAGACCATTACATATCCTACTTTGCAAAAAAACGTGAAATGTTTTCAATTATTACGCGGGTTTCTAGCTCCCAAGCAG-AGCATGGACTAGCTGAAGACTTTGTCATACTCCTCCCTGTGTGTTGTGTGTAGAATCGGTGCCTAGAAAGGACTTGATGAACGTTCTTCCCCATACGGCATGTGCTGTTGGTAATTCCTAAAAGTGAACAAGATGGCTTCCACAACTGCTTTGTATCCATTAAATACACAACGGAACAGATTGGAACTTCACCAGACATACGCTCTGGTTTTA---CACTAGGTTCTCCTTACAGCATGCAAATGCAG-CGTGGAGGGCTGATAAGCAAGTAGATATGGTTGTGTTCCAGGGAAA--ATGTCAAAGATA-----------TGCAAGCATCGTG-TTTGCTGACTCCCGACTTTGCTCGA-----ATTCTGTACCATTTTCTCTATGGGCAGTTTTTGATATCTGCTTAACCTT--GGTGGTCAGTAATTCCAAACTGATTGGTATGGCACCTTAAACATAATAGATACTCAGTTAATAAAACTTTACATGTCTCATCTGTAGAAAAGTA---TGCATAATTTTAA---CAATTTAGAG-GTTCC--------TATGTGACT----------TTTTAAAAACTACAGAAAGTAAACAATTAGAATCAAAATTCTAATACATTATCAAAGCTAGCTAACAATAGACTTTAGTCATTATGACt
s HiC_scaffold_1 131748161 1415 + 233722169 ttttcttggacaa------AATTGTAAAG-----GAGTGGGCAAATAGATACTAAATATGGAAACATAT-TCACATTTAGTGCCTGAAGTTGG-------CTTTTTCCATATCTGGCTGATGTTTTATTTCT---ATCATCAAAAGTTTGTATTAGATTAAATGttgtaaaattatcatttttaagatACAACTGGTTTAAGTAATAGCAGT---TTCATACAGT---TAAACCTACCATTGCCTTTGTTGtggtaagaaaatttaaaaattcctttgtgaatttttaaaagtgtaagaaataatactgaCAAAACAT--TGAAGCTAATA-TATTTCCATGATGAAACAGAACTAAATTCTAGAGAAttagccttttaaattttatttcaaatgaatttGATGAGTTTTCAAA-TCTGAGATTCTTTATGCATTAAATGCAGTAGTTTGTGTCttaaaaaattcagaataatatAAAGCATGCTAGACCAGTAGCTAAAGCACAATAG--TTTACAGATGACTTTCAAGTCTAAAACAGATATCTGAAAGTGTTTTAAAGCATTTTAGTTTCAAATAGGAAATGTTCTCCTTTTTTCACTCTGC------AATGAATAAATAGGATGtggttaactttaaaaaaaagcaaatataacattataaattttttgctgacttttag-gaaaaaata---------------tttaagaagtgaTTCACTGAACATCAGGTTCTTTGGCCATCTGAACTTTGGCTATAGTTAACAAAATCTT----TAGACTATTACATGTCCTAGtttacaaaa----gtaaaatgttttcaattattaTATGATTGTCTAGCTCTTAAAAGTCAGCATATTCTAGATGAAAGCTTTTTCATGTTGCTTATTATGTATTAGATATAGAataagtgttttaaaatgttttaatgaaaattcGTTTCAGAAAGGAATATATTACTGgtaattcttaaaattaaatattattacttCT-TAACTCCTTTGTATCCCTTAAACATCGAATAGAAATGGCTTGATCTTTGTGAATCTTAAAGTCTCTGTCTAATCTACTAAATTCTACCTACATAATGCAAAAGCAGtcataga----taataaa-aaatacGAATGGCTGTGTTTCAATGAAACTGtgttaaaaacagagaaacagcCTTCAAGGGCCATGATGTGCTGCCCTCC----TTTTTAGAAGAGCATTCTTTAACAATCT-TTTGtcggttttattttttatctgcttTATATTTCAGTATtagttatttctaaaatttctag--------------------------------aataaaattttatgtatttcatctttagaaaaacaaagtacATTATTCTAATACTAATTTGGAGTGTTCCTCCAAAAGTGTATAACTTAAAAATAGAtataagaaactaaagaaaactaTTGGGAGGAACCAAAATCCTACTGAAATTTCCAATGgagccaaaaacaaaatttagtcATTGTGATT

a score=13538
s chr3           145427813 487 + 160039680 TACAAGTGGGCATTGAGATACTTTCAAAGAAGCTAGTCACAAAAG------TTATATGCTAACATATCTCCAACAAGTAGATATGGAAGTTGTAAA-TATTTTATAACATCTTGCTGTTTATTAGTTTATAAGGACAGAGACGA-----------------CATTGTCTCCCAATAAAGTATCGGTTGTGTATTAAGATTTG-------------------ATTTAGGTA------TTTTTGACTGACGGAATAAATTAATTCTAACAAGGAGTCATAGGCTATGTACCTATTCTACGAAGGA----TTTGCCTCCAAATAAAATT-AAGATGAAGTAG--ATGTAAGCAGTAATTATAGGTGATTTAAAACCAGGATGCTCTAAGAGTGATGTAATGC-------TCTTTTCTGTTATTTCTTTTCTTACAAGGGGCCCGTTGGTTTACCTGGAGAAGTAGGGATAACCGGAAGCATTGGTGAGAAGGTAACCCATTTTGTTATTTTGTTTCTTATTAAAAACTGAAGGCTAACTTTAATCTTCCATAT
s HiC_scaffold_1 131762749 538 + 233722169 TGCATGTATGCATTGAGGTGCTGTCAAAGAAGAAAGTTACAGCACGACTTCTTAAATG--AATATATCCACATCAAGCAGATATGAAAATAGAAGGGCTTTTTATAACCTCCTGTAGATTATCAGTTCACAAGG-CAGAGACTATGTCTGGATTGGAAATTCACTGCTTCCTAGTGTGGTACCTGCCATGTagtagcgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtactgtctTTGTTGGCTGAATGAACAAAAGAATTCTGATACGAAATCAATTGTCACGTACCTGT---ATGAGGGGAAattttacctcaaaataaaatttaagatgagTTAGGAAGAAAAGTAATCATTACAGAGCATTTAAGACCTGGATGCTATAATAACAACATAATATATGTGCATTTTGTCTTATACTTTTTTTCC-AAAAGGGACCTATTGGCTCACCTGGAGAAGCTGGGATAACTGGAAGCATTGGTGAAAAGGT-----ATTTCACTGCATTTTTTAATAGTAAGACTTCTAGGCCAAATTCAATTCTTTAAAT

a score=14361
s chr3           145430914 1072 + 160039680 CCTCTTTGGAAGCAATTTTGAATCAGAAGAATAGGCGTCCAGTTTACTCTTTTCTTTCCCCCAACTCATTTATTAGACACCTGTGCTACATTCAGTCTCATAGCTTACCTGACCCAGGTCACTCTCTCATCCCAGACTTTTATTCATGGACAAAGGGTTGGACTCTATTAACGTCCA---CCCTCTTAGAAAATGTCCGCATACATCTCTACTCCTCCCTGGTTTTCTCCCTCCCTGGGGTGAGAAA--AAGCTCTA---CATGGTTCACAATTCAACTTCTTTCTAATTA--TTTTATCCCTGCTAATAACAAATCTATTGTTACTTGAAAGCAGAATATA---AAAT--------TAACTTTA---TAATATAATGCAAGTTCTTAATATGTGCTTATTGATTTTTAATATAACCAAGTACAGAAATGATTCAATTATTTGGTTATAATTCAATG---AGCTGATACTTAGACAATAGGA----------------GGAATTTTAACGTGATTACATT----ACTTTTAACTTCCTATTGAAGACTAGAGTCCTACAACCCTCCAGAATGAGAGCTGCAGA---TCTTCACTGGGGCCCACAGTCCAAGGAAGTAA--TTTCTTCCATTGTTCCAGAGATTACCTCTTTTTTCAATTTGCTT-GATGTTTTTAGGAATTTCCCACTCTGCAGTCTCTTGTAGTAACTCATTA------CAATTCTCACTTATAAAACGTTACAGGCTATG-TGCTT--TTTAGAAGATCTCGTTTTTCCATAGTTTCTAT---CTTCACTTCAATAAGACTGTAAAGCA----------GAGAACGTCATTGTTTTAGAAAATTTGCAGGCATGGGGTTAAAATGCAAGCTCTGTACGTTTCAGAGGTGTTGATGGTGAAGGCGGGATGTGCATGCAA--GCTATGGTT---GTGGTTTCCCTTCGTAGCCTTAACTCATCCA----TCACTAATACCACTCAGTGATGCCTTCTCTCCTTATTGTTTCACAAGGGAGAACGTGGAAGTCCAGGCCCACTTGGTCCCCAGGGGGAAAAAGGTGTCATGGTAAGAATTCAAGATCTAAACACTCTGTTTCCAACACACCTAATAACAAAGCTAAGGCCTGCTGGGGGTAGACCCG
s HiC_scaffold_1 131763761 1069 + 233722169 CCACTCTGGAAGCAATTTCGAAACAGAAtatta-----ttaatttacatttcttgttccc---atttgtatttt----------------cccatccttactgttttctttgtctACAGTatcttctc--cccttccctctaTTCAAAACCAAGTTGTTGGACTCAGCTGAGTTCCCATTTCCTCTACGAagattttt-tagatttttctaatCCCTCTTGATTTTTGCCCTTCCTGGAGTCAGAATCTAAGCACTGTACCACAGTTTGAAATTGAATTGTCCACTAACTGATCTCTGTTTATACCTATATCATGTCTGCAATTACTTGA--GTAGACTGTTTTTAAATATCTCTCCTAACTTTCAGTTAGTATAATGTA----CTTAATATACGTTTAccaatttttatcataa--aaacattagttttatatttttatgttgatttaCTTTGATGCTGGGTTACCTCTTCTACAGTAAGATTTTCTTACAATTCTGGGAATTTTAATGTGAAtcaatttaatctttttaatctGCTAAAGCAGATTATTATC--ATAATCTGCCAGAACTATTTCTGCAGCAATTATTTATGGTAGATTGTAGGctgtagaaataaatttttttcaatggTTATTCAAATTAA-----GTTCCAGAATACTTTGATACTTT------------ACTCTCAAATTT--TGTA-TATCTCATAAATAAAGCATTTCCACCTAAAAAAAAGCTTCAG--CATGATACTTGATTAATAATGTCTTGTTGctccatgttttctgttttcttcattttaattagaC-ATTTagcattttttccttgaaaacatc----tttaagaaaattttaattc----tattaaaAGACAA----------TTTTAGAGTGAAGaagagtaaaatttaaatatcattgaAAATGGTATGGttctaataattttcttttctagccTTAGTTTGATCACTGCTCATTAACGTGGCCCAATGTTACTTGctct--ttattgttttaaaaggGAGACCGTGGCAGTCCAGGCCCCCTGGGTCCCCAGGGAGAAAAGGGTGTTAAGGTAAGAGCTCAG----TGAAAAATACGCTTCCAAAGCAC---ATAATAAAGTTGAGATATTTCAGAGGTAGAACTG

a score=23021
s chr3           145432348 1441 + 160039680 TTATATCCTCAAGATAATGACAACTGATG--TTTTATACCTGGGTTGTACTTTTAGTTTATTAAATAGCTAGTAAGTGTTACGGGAAATTTAAAGGATGACCAGTATCAGTTCTAGAACACCCCCTTT----CAGAAAATATAGAATAAAG-----GTGGCATGTAACACTATCTACAAGCTCATTCCATCTTTTACTCTTTATTTTTAATTTCTTTATTATCAGACAAGCACCACAAGATTTTTTTAAGCAATTTCTAGTAGGGGGCAGGTAGTTAACCTAACTTATTCATA-AACCAATTGATTCAAGAATCTTTCCCTGCTAAGACATCTTCAGAA-TTAGTGTTAGCGGCATAATGAATGTGTTCTTTCTAAAAGTTGA-----TGGATTAATTGCATCTACCTTCCTTAATCATGGGATTTACTAACCTCTTTGAAAAGTTCATAAGTCagccgggcatggtggcgcatgcctttaatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagctccaggatagccagggctatacagagaaaccctgtctcaaaaaaaaaaaaAGAAAAGAAAAGAAAAGTTCATAAGTCATGATTAGTATCATCACAGAGCATA-GTCCACACATAAGATATCATCACACACAGAAAGAGGAAATGAAGGGGATCCTGAGGTATTATAACACATGGTG---CCACCTAAGACTTTCTTTTTAAAGCAATGACCTAATAACTGACAGGCAGATTCTGTGGAAACGCATGTTCAATTTCTGTGACCGTACTACAGAGCATTTCCTATGGTCTCATGTATCTTAGGTAGAAAAGGGTAATCTTGTCAAACTGTTATTTTT-GTTACCATTTGTGGTTTACTGTGGTTTTTTTTTTTCTTAAAGGAAAATGGTTAATTATATGTTTTATATTTCATTTTAATCTTAGGGCTACCCAGGTCCTCCTGGGGCTCCAGGGCCCATGGGCCCACTTGGATTACCTGTAAGTATAGAGCA-GACTTGTGGTCCTTTCTTGAATGTCCACTTTAATTT--------AAATTCAT-----TGCCATCTTTTTGAGTCTCATGT-AAATAATCTATGTATAAGATAATGGAGGTTGCACCTCTCCTAAACCATAT-GAACTTTCTGAAATATTTCTTGGTATCTTGAGCTTCCTT-AGCCCTACTATGTATAGTAACCAATTTCAGTTCTCTAAGCCTAAAAGAAAAAAGGAAAAAAATGAATCCTCCTTCTGCA-----------AGAAAAATAGAACCAGTAACCAAAATACAGCTGAAAGCCAAGGA-ATTAACAAAGCACGAGGAGttattttaaaatgtttttttttaattttGCAAATACTCTCAAACAAACAGTTAAAATTCATAGGAAATGTGCTTTTGGTGAGTAGCACTTGAGTTTTGAATCTCTTCCATCTGCTGTTTTCAGAAA
s HiC_scaffold_1 131765079 1210 + 233722169 TTAGGTCTTTGAAGTAGTAAGAGCTGACAAATTTTATAtatagctttcaatttttggttaTTAAATAGTTTCTAAATGTGATAGAAACTGAAATGAATGAGTATTATCAGTAAAAGAATCTTCCTTTTACTTTAGAAAATACATTGTTATGTTGTAGGGGAACTAAATACTGTCTACAAATTCATT-------TTACCTAtcattttagagtttttt-----------------------tttttttctgctatcaCCTGTTGCTCTAAGCTAGGAAACTTA---TACCCATAGAACTAGTCAAATT----------------TAAGGTGGTCCCAGAAGTTAGCATTAATGCCATAAAGTATATGGTCCTTCTAAAACTTGACAGTCTAGAATATTTGTATACAT---------TCATG---TCCCTTAACCTCTCTGAAAAACT---------------------------------TGATTTCATCA-----------------------------------------------TCTATAAAAT---------------------------------------------------------------------------------ATGA-----------------CATACGTCTATGAATAAGATA-----ACTTACAGAAAGAtgaaatgaatgatttttt------tctcaatacACAGTGACTCTACCTAACAAATTTTATCCAAGGCAAAAACTTCTTAAt---------ggttctataa-----ttttttttatttttatgagcttTCTGAGCAACATTTCCTATGACCTCTTGTATCTTGAATAAAAGGGGGAAATCTTAACACATTATCCCCTTtagttattatttataatttactgG----TTTGTCTTTAGTGAAAATAACTGGTT--TCATCTCTTTCATGTTTTACTGAAATCATAGGGATATCCAGGTCTTCCTGGGGTTCCAGGACCTGTGGGTCCATTGGGATTACCTGTGAGTACAAAGCGTGCTTTATGATCCCTTCTAGATTGTctactttaatttcctttttaaaattttgctttatgtTATCCTTGCTTATTTCATGTAAAATAAGTCATTTGTGTACTAGTGGTGACTGCTTCTCTCCCAGATGACATAAAACCCTCTGGAATATGTCATGatatcttgaatttttttcagctttACTTGGTATATTAGCTAATTTCAGTTTCAtaa-cctaaattttaaaatg------ttgaaacttTCCATTGAATAATCACAGATAAAAAAACAGGATCAGTGATCAAGACTAAAATTGAGGCCAACTAGATAAACAAATCAtgaacataaattt--aaatattttattagaattttgtAAATATTCC----TAACCAGTTAAAGTTCATAGGAAATGCACTGTTAGTAAACAAAACtcaagttttgaaaatatttcataaattatttatacaaa

a score=15007
s chr3           145434899 723 + 160039680 TGATACATTAATTTAAAATCACTTATGATATTATTCATGGGTTCAGAAAATATACAAATTTTATACACG----------GGGTTATACAGATATACTTAAATAGCAAAGAAATTGTAACAATAATAGCTATTGCTTCTTTGATGGAGCAGGGATATTAGGCTGGTTCAG---CTAGCTAAGAGGACCTCTCCTTCACATTTCCTTTGAGCATTCTTCCTGAA---CACTATTCCGTGAATACTAAACCCTTCCAATTCATTTC----ACCCATAAAAGGCATTTATCCAAAGAGTGAAATATTTTGAAAGCAGAACACTGGGGAGGGACACATGGtatttattaattaaaatttatttGTAGGGAAGCAACACATGGTATTGATTAATTAAAATGTATTTCCAGGGAGATAAATAAATTTCAGTTTTAAAAATCCATCAATTAAAATAAATGTCACA-TAAGAAAGTACAGATACTATTCTAGAAACAATGTTATGAATTTGATATCTGAGTTTTTAAATTTTCAACATGTAGGGTCTTGTTGGGGCAAGAGGCGCACCTGGGAGTCCGGGTCCTAAAGGACAAAGAGTAAGTAACAAA-----AAAAGTATGTTAACCTCAAAA-AAGTCACCTCGTAGTGAT--GTGTTTGACAAAGTCAGCTATACACAGTCTAGAGTCATACTCACAT-GTTGGATTTTTGCTGTTTTTATTCTGTTAGATGCACTGCCTATAGCAATTGAAATATAAC
s HiC_scaffold_1 131766747 691 + 233722169 TGACATGTTATTTTGCAACATTTTGCTGCAtt-ttcatggtttcagaag-----taAGCTCTATTCTCGCCTAACTAGATTATTATAAATGTCTAGGTCAATGGTAAAGAAATC-TCACAGTGATGAGCACTGCTTCTTCAATCCC-CAGATAGACTGTGCTGGTCTAATGCCCAAGTGGGATGTCCTCAACCTCTCACTCCATGTGTGTCTTC--CCTAAAGCTCCTTGGTCAGCAAATATGAAAATCTTTCCATTCTTTGTTCATACCTAGAAAGGACATTTTTCCAAGTattggaatattttaaaacaagaatacTCGAGAAAAAACCATGATATCTAATAGC----------------------------------------------ACATATTTTTAAGACAACtaatcaattttgtttttaaatttcta--aggcGATTTACCTTTTATAAGAAGGGAGTTTGACTACTAGTCTGATAAGTTTTCTATGAATTctataactga-tttttaaatttgtaatatgTAGGGTCACGTGGGGGCCAGAGGACCACCTGGGAGTCAAGGTCCTAAAGGACAAAGAGTAAGTAATATAATGGGAAAAGCATTTTGACCTAAAAACAAATTACTTCCTAATAATAAGAGCTAAACAAAAATAGATCCATACCTTTCAGAATTATGCTGAGatagtttggtttt---tctttttttttcattagatGAATTACCTACATTGATTGAAATAAGAC

a score=23318
s chr3           145436111 2856 + 160039680 AAGCACTGCAGTTTCCCAGTTGTAGAACTGAGAGAG------------AGTCC---TGTGGGCTCTGTCGGAGAACAGCTTTGATTTTACGTCTCGTGTGGTAGGAGAGA-TTGAGGGGAG--ACTTTTGTCTTTATTATTATTTATTTTATGAAAAACCATTTTCCTTCCTGGCTTTTAGATTGCTTATCTGCAAGCATCAGTGATAGTTG-ATTCATTTTAGCCTAAATAAATTTAAAGCTAAGAGAGAAGG------------------------------------------------------------------------------------------------------------------------------GACCCATGC-------------TCTTAAGTGTCGTTT-GCTGCTTACTGCTAGCCAGGACTCGATCCTTGGTGAGGTCAGAGGTGTTTATTCAGTCTGGTCTGAGTCATAGTGAGAAAGCACAACAG--CTTGTGGCAGGT--GGATTAAAAATAAATACTTATTCCAGTCTTTGGTTAGTTAAATGATTTAGGTCTCAGTGATT-CTCAGGCA-AATCCATGTCCCTAACCATAGTACATGCTGAACCACTTGGATGATCTCATAAA------------------TCCTGTTG-CAGTTTCCTAACTTCACTGGGACCAC-----GAGTAGCTTCCTGCTGTCCTGACGTGTCACGCTGCCCTCG-CCCTCATATCCCCAA------GCCTTTTCATCATTTTCCAGATATGGTTTCCTGACTCTCTTCAAG-TGGAGCCACACAATTTTAAACCCTTTCCCTCAGGAGTTTCTACA----AAAG--------GAAACTTTGTTAGGGGAGAAAGGTGTC---TTTCTTCACTAGGAGAATATTACTAATGGTAGACTCCATACCAaataataataataataataataataataataataatTGAATggggatggaaagatggcttctttgttgggagtactggctgctcagtcgtgagaactagagttgtgtt-gccagcaccatgtcaagtagctcacatct--gcctgtaa--ctccagctccaggagg--------tacagtgtcct---ctcatgacctcctcagacaTTGGATGGacactcacgcacacacacacacacacacacacacTATTGAGCTGGCCTACTGAGGTAAGTTGGAA-AGGTGTCAGGCTCCGAGACATTGGGTCCATATTCTGGTGCAACC---ACAAAAGCTAAGGGAATCGATTCTTCTAGGATGCCTGTCACTTCTTT-----------GTGTGACAGGGCCCTGAAGGGAAACTATACTCTTAGGGACCTACATTCTGAGCCCACACAGAATGGCCTAATGCTT------ATTCACCTTTCCTAGTTGTTCTGGGATTTATACTGTTCTCAAACGGTCATACAAACATTACGAGCAG-TAGGATCATTCCTGAGAGATTCTGCCTACTGACAACCCACAGTC------TATCTACCCAACCTGATTTCTTACCGTTTATA----TAACCCTTAACTCGTAACCC---GGAAGATCCTGTGTCAACTGCCCCTCAGGTTTCACACCACAGTGGGCTTTCCAATTTTGTGACTTATGGTCTTGAAACTGA-GACATATGATGGAATACTAAAAATCTACCAAGGGGAAGGAAACTTAAAGCAGGCCACAATA-----CAAACGTCTAAAGAGTAAGGTAACCATAACAGTATCAGGAAAATTTTCCTAACCTGCAGTGGGATGATTGTATAATTGTGCCATTTACATAACTGCAGAGAATAACAAGATAAATAGTAAAAGGTAGTCataaatatattaaattattatataaatGCCCTTTCTATT-----TAAACATTAAGCATCTTAAACATTAAACATCTTAATCTATTC----CTAGCTGGTATGGTTAGCCGGAGAACAGTCAGATAAAGAGAAGTTATTCAATATACTAAAACTACTCGGTGCAGTTCATAAA---ATCCTTTCGTTTGTCGT-----CATGATTTAAGCTGACAGATTCGCTACTCTGGTCCCAGA-TGATGGAGGCTTGGCCTGATGGGCGGTTAGGAGTCAGCTCAGCCTGAGCCATTGCCGTTCACATACA-AGCTGACACTTGGAGGATTGCTGATAATAAGGACGCTGACACCTGCCAGTCTTTCCCT----CTGTGCCCAGCTGCCCA--CAGGAGAAAGGA-TAGGAGCAAAGCAGGCCTCACTGACTGACATGGGCAGGAATTAAGTCGTCCTTGATCACAAGCTCTCTCTAGATTCCATCCTCTTTCTCTAGAGCATTGGTAGAGAGAGGCGGGCAGCTAGCAGATTTGGTATTGAGACCATGCTGCTTAAGATGGGGATGGGGTAGAGGAATAACTATGTTAGAAATACACAACAATTTAGAGTTTTCTCTCCAACG--GTGACACCTATATGGTGATAAACACTCTGCAAGTTGGTCCCTTCGAGGGGCTGTCTGTCATTTTAAGGTAGAGTGCCTTCGGTAGGATTTGTAT----TTAGGATCTGTGCTACGCAATAGCTAAAGTATTTCAAGTGATATAG--ATTTTTCCTCTG----------CTCTG----------TTA-AACGTTTGCAGCAGGGACCTTTCCCCAAGGGCCCTGACAGTGTTGATTTGGTTCAGTGGATCACTTGGTTCCGGCTGTGTAAATCAGGGGTCAGAAAAAGGCTGCTTGGCACATGAGTTAGGCATGCGAGTGAGTTGAAAATTA-ATAGGGATCATATCAAGATCCAGCTCTGGCTCCAAGAACATATAAATACACTGAGTC-------------CATCTGTCCTAAGGACACAG-CTATTTCCTTCATTCACGGGCACTCAGCCTGTCGTAACCTACCACAGAGGCCACAGATATGGGCTCAAGGCTCTCATAATGGTCTTCCTAAGTAAACCAGGCATGCA--GTATATGATAACAGTTTGGTTGACTGCAAGTTTCTTCTTTTTAATTTAGTATTTATATGAAATAGAAGGCCCCCCAGCCTAACACACATTGCATTATGTTGCAAACTGCT--CACTCGCGAGTCTGCCTAAGTC-CTTAATGTATTTACCTATGTGTCAAATATGCAGTATGCTTTTCTT
s HiC_scaffold_1 131768634 2959 + 233722169 aaaaactgcagttTCTCAGTTG-ACAAATGGGAGAGCCAATGTTATGCATTCCCATTTTGAACTATTTAGG----CAACATTAATCTCATGACCTGTATTTTAGATGAAAATTGAAGAATGTAAAAGTTGTccatattattatttctttcg-gaaaaactgttttctttgctggATTGGAGATTTACAGACTGTAAATAACCCTATTAGCCACATCTATTTTAgcctaaatgagatttaaaataagattgaaaaTGATAATAGAGgatttgattgtttttatattaaagaaaaaaaataacagtttcgagacaggttagtaggagagttacaataattaatactttgtaaattgttgtttttgtggtattcagagtacaagacacagGCATTTTATCTTTTGTATCAACTGTCATTTCATTGTTTA----TACTCTGCATTCAATATATCATCAGGTCAAATGTGTTTATT-AGACTC-TCTGAGTCATGCTAGAAAAGTTCAACCAGTTTTGTATCaggtaagaaaaggaaagaaatacttaTGTATGCCTCTTGTTAATTTAGTAATCTAGGTCT-ATTGACTGTTCAAGCAGAAGTCATGTGATTAATCATAGTACATACTGAACTACTTGAAGTGTCTTATAAAGTCATAATGAGAAGTTCATTTGGTTGACCATTTTCTAACCTCACTCTGATTTCTGTGTAAATAATTACT--CTTTCCTGATTTGTCTCCACGACCTCAACTCCCACATCCCAAATGATGTGttttcttcttatcttttcactACATTTTACTGATTCTTTCCAAAATAATActtcataattttaaagatttttattcaaCAGTCTCCAAACAGTAAAGatgttttagaaattatttagGGAAACAAGAGGGTCAGCTTTCTCCAGTAGGAGACTATTTTAAG---------------CAACTTGTGGTCAcctggaggagaaaaaaaagaacaactgaa----gaccgGAATAT------CCGATAAAGAATAC----------------AGTATTGGCACTGTAATAGCCATCTcatagtttcattttttatttctttgcttttcaatCTCTCTTTCCAGTATGACTTAGATTCCAATATCCTAGCCTCAT-ACTTCCTAATATTTTT------TACTCAC-----------CAAAAATGAGAATACTTTTA---TATCCTAGTGAGATAAATGGCAGGAGCTGTTGTGCTC-----------------ACTCCTGCCCTGCCGGGATAAAGGCT---GGAATCGAATTCTCCAGCACAACTGTAATCTCTTTTTGGCACACCTGTGTCAAGGGAAACTGGAGGGAAACTCTGCTCT-AGGAACATTTGTCATGA--CAACTCAGAAAGACCACACGTTTTGCTTTCTATGCTCCTCCTGCTCTGTCTGTGATTTGTGTTGTTAGCCAATGACTGCATGAGCATGATGAGTGGGTGGAACCGTTCCACAAGGATTCTGAC-ACCG-CATCTAACATTTGTCAAACATTTACTCA--------TTTTACAGTTTGTAATTTTACAGTTTGTCTGCTAGCActagaaaagatttaaaattaactaccCT--GAGATCTAGAGCACA-TGGATTTTACAGTTTAATTACTTACAGTCCAGCTGCTTTTGAAGTATTACGCAATACTAT---TTTCCCAGAGAACAGGAAAACTTGAACAAGCAATAATGTCCTGCCAAC--TCAAGAAACAATTTAAACACATTAGTATCGTGAAAGTTTTCCTAGCCTGTTTTGTGAAGGTTGTATAATGCTGCCTTTTATAT----GCTGAAAACAC--------------AAGGCTGGCTGAAAATACCTC------TTTTATAGA----CCTTAGATGGGAGACAAGCCATAAG--TTTAAAGAATTACTTaacgtattctgtttgtttctaccTGCTACACTTA--------ACTGTTAAGagaagcaaaataatttaatctATCAAAG-TAATTAATATAATGTATGAACCAAGTCTCTTATGTATAAGATATGTACAACATAAACTAACAGATTCTCTACTCCCGTACAAGAAGGATAATGTCTTAGTATTTTACATTTCCAGGAATCAGCCTAACCTCATCTTCCTCCCTGCACATacacattttactttttgagCA-----------------ACTAATCTTTG---GTATTTCACATATACTGTGTTCAGCTGCCTGAGTGGGAGAGATGACTCATGGCAATGTTAGCCCCATCTTCCCACTGGCCCATGCATTGAGCC---TTTGATCATGAGACACCATTAAACTGTGTAATCTTCTTCTAAAGGGGTT-TGAATAGAAACCTACCACTGAGTAACTTATAATTCTGAT-----TGCTTAAGATTCAAGCGGGCAACATAGAT--------------TAAACTACTGTATTAAGgtttcttatgaaagaagtaaaatgaatatga--ataaaatttctgaatttttg-----------ggTCATATACCATACAGAATAAAGCAGCCATCAGGACGATTTGCATAAGATTTAGATCTGGGT-----AATTCCTGGTGCTCTCCAAGTAACACAGCAAAATTCCCACTATAGTTCAATCCACTGGAAATAAAGTTTATAACTTTAGAAGAAGAATCCTTTTCTTCAAATTACTGATAATATTAGTTTTGTTTAATGGAACATTTGGTTCCAGCTGTGTGAATCAAGAGCCATGCAA--GATTTCTGGCTCATTACTTAGGCATGTGagcaatttaaaattaatataaggCTATtgcaaaaatagaaatacaattaaaaagaaatacaaataca-taagcCAAAATTACTTAAACATTTGTTCTGTGAATAAAGATTGTTTCTTTCATTCAAAGATATTTATACTATTATAATTTATTACAGAAATCCGAAAAATGGACTTGGAGCCCTCATAAAAGtcttcctaaataaa-taaatatgcaatatatatgctaatatttt-----------aattattttttttctttttagcacttA-AGAAAGTAG-TGGTCCTGTCTTCTATCACGTAATGCA-----TTTAAGATTGCTAGCATTCATGAATTCATTGAACTCTTTTAAGATTATTACCTGTGCTGTAAGTA-GCTGTTTCATTTTCCT

a score=8716
s chr3           145439684  997 + 160039680 TATAAATTTTGCTTTAATAGGG-------AGCTCCTCATGGGCCTCCTGGGGTGTTCGTGCTCCCTCCAAACCCTTGAGTGAACCTGGGAATACGCTTAAGCCAGGATTCCAGCCT------GTAG--------AGGCCTATTGTAGCAAGCAGCTTTG--------------AAAATAGAATTCTGGACAATAGA-------GCCAACGCGGGGACCCCTTCA---CCTCAGAACTTGACAGGGTCTC-----AAGTTTGTGCAATTGTGCTGTATAGAAACCTTCTG---CTTCCTATCACCCACTTACTTAAATGC---------------------------------GAATCCTGGCTTTGTCT---TCTCAGCACTTCCCTGCATGCAGCTGACAGCCTGGTCAGGCTA---------------AGGCTCCTCT------CCTCA----CTCTTCTCCACGTGGTCCCTCTGCCTGCTTCTACCCA--------TAACTCACAGGGC---TGACCTCGTACATCCAAGT-GGCATCTCCATGCCTGGGACAAATGTGCCAGGTCTGCCTCC--CTGTGGACTTCTTCTCTTGGTCCTTTGTACAACCACTTCTCCCTTGAAC-----TAATTACTCTT----TCTATGAAATCATAAAAATAAATT--------AAGTATTAAATAACTTAGTGTTCCATGATGAAGAAACTCATAATTACATGTCGGGACAGCAATAGCT--ACCTCCTTTCTACAGAGGGTGTCCACGTAGAATTTAAGTCTGTTACAGAGCCCTTCAAGATACATATGCTTTAGAAAGCGAGACT----TATCGCTGTATGAGAGCA-----------GCTGGCTCTTCTCTACAGGTAATTCCTGAGTAGATACTGAGAAGATTTGCC----CACAAG---TGCCA-------TTCTGTCCCTGTTCTGAGCCCCTGCCATCTTCCAGTAGCTGCTGTCCAGTGGACACATAGCAAGTGCAGTGTCCTGAACATTCATTTTCTAAAAATGCAGAGAGAA-----CAATTCCAAAATAATGAAACTTAAGACTGCCTAGGCAAACAACCCAGGATCTTTTAAGTTAACTTAGAGCCATTTTAAGAATAAATCCCTCAGGACTGCTGgaaagaaagaaagaaagaaagaa
s HiC_scaffold_1 131783509 1106 + 233722169 TATGGCTTTCACTTTAACAGGGCCAGTGGAGCT----ATAGGTCCTCAGGAGTGTAAGTAATGTTTCCAAATCTATGAATGTAGCCAAAGAT-----CAAGGAATGATATTAGCCTTCGAATATAGGAAAAAACAGTTCCATTATAATAAACAGTtttttatactataaagctaaaacaaaacatatgtcaAATGAAGTGTAAGATAAGGTAGTGAAGACTTGGGACTCTCACAAGTCAGTAGGTTGTACTGAGAGGTTTGTACCACTGCTCTG-ACAGAACTCTTGTGGGGTTCCTTACTGCCACATGACTTAAATGCATACTGCCAGTCCTTCACCTTATTACATCTCAGGGATcctttctatatttatttcttaatatttttatagaagTAATCAGTGCCCTGACCAAActactttttcattctttgagtATCTTCTTGCGCGCCTCAGTTCCTTTTCTCATAGTGTTGCTCTATCTTGAGTTTATTCAAGTTTGAATAATTCCATGAGCACTTAACTTCCAATAGCCAAAAAGGTATCTGCATCCCCATTACTAACATGTCAAGGATATCTCCACCTTTGAACCT-TCCTTTCAGTCCTCATCATGCCTATCTGTGCCTGTAGCGTATGTAATTTCCTTTCCATTCTATAAGAT---ACAAATGAATTTTTCTCATAATTATT------CTTTGTGACCCA------ACAAATGTTCAATTAGAGACT---ACAGAATTGACTTAAGCTCCTT----caaaaagtct----------ttaaaatctTCCAAGGA-------AAGATAAAAGT----TAGATAGGTAGAGTATTATATAATTATACTAGAGAATGACTTTTAAAACTAGTACTTCTCTACAACTAATTACTGAATGAATACTGAGAAGTTTTAAATTGGCATGAGCATTGCCAACAGTATTTGTGttccctttctctgcctctgcTATCTCCTAGCAACTGTTGTACA-TAGATGCATAACAGGTACAGTACC----------------TAAGAATGAGAGAAGAAAAGCACCATTCTAAAAATATGAAACTTATGACTATTTAGATAAACACATCAGCCACTGTTAAGTAAATTTATAGTTATTTCAAGAATATATCCAGC-TGACTGCTGAGTAAAtcataaagtagaaaaaa

a score=18627
s chr3           145441300 1711 + 160039680 GGGGAGCATTTCAAATTAACAATGGGATATTGTCCTTCTACCTATAGGGACCCAGAGGACCAGATGGCCTTGCAGGGGATCAAGGAGGACATGGTGCTAAGGTACTTGCTGATTCTCC-ATTTCACGCGCAGTTAAATGTGGCAGAGCCATTATG------------------------------TCCTGTATATTG-----------AAATACTACC--------GCATAGT----------------GTTTAA---------------------TACATATCAGCCATGTATCCTTTTTAATATTGAACTGTGTACTTGATGCCCTGTTTTC---------TGTGTAGTACCAT---TAAAACCATGGCTCAAGTTCTGACCAGTCCATGTGATATTGATATTTTCATAGGGTGAAAAAGGAAACCAAGGGAAAAGAGGGCTTCCTGGCCTCCCCGTGAGTAGCAAGCCACGTGGTCTCCTCAAGCACGAGCATTCT--------------------GACGTTCCCTTGTGCTATT-TGAGAAGGCTGAA----TGACCTAAGCATTTTTTTTCTCTCATGTGTAGGGTAAGGCTGGAAGCCCTGGGGAGAGGGGAGTTCAAGGAAAACCGGTAAGT------------------------------------------------------------------TTTTTTTTTCTATAAT-------------GTGTTCTTGTTATTAATA----------------------ACAGAGCTGACATG-------------ACAATTGTAACTCAATGTC-----AGTCTCACCATGA-------------------------------------------TTGAC----------------------------------------------------------------------------------------GTTTCTC----------TAAAAC-----TCAAAACGAAATGCCGTGCCGTGGAACTGTAATGGGACATAACAAAA-TCATACAAGAAG--CATCCAGGACCTCTCTCCTAGCTTCATCCTAACTCGCCTCGGGTGCTGTCTTCTCTTTTGCAGTGCAGAGTCTCACGCCTCTTGCATAATGAGTAGTATA---TCTCTCATTATACTACTGTAAGAGTTTTCAGTGTTTTATAGCGCTAGACATTTTCCAACCATCTCACATCTTACCAGAATTGTACAGATTTTTCCCTGGGCATCAATAATTTCTGTGGCCGTCATC-----ATGAAAGAGTAGAGAAATATTGAACA------------CTGCATAGACAAACCTTCGCTTCTGATAATTACACA-----GATTACACACAAG---GACTTTTAAGAGCTTTCATTCTGAATCATAATGTGAGTGACACTTTGATTTGTCATGTCAATATATCTGATGGCTTAAATCTAAATAATTTGAAATTTTAAATGGATGACAACTGAGGAGTCATTAAAGGCCAGGACCTAGGGGCTTCAGCTGGT-----AGTGGTTGTACCTAGGACAATGTTTGCTTGTTCCTGTTTGAAGTCTGCTGCCCCCTGCCTGTTGTCTTTTATTATAGCAGTGTACTTGACAGCAGTCAGATCTAAAATACCAGAGATTTGGAAGAAAGTAAATGACTGTCCTGAAAAAAGAGAGGTGTGTTTACTCTTGTG-CATTAACTGAAGGCATTCTC------AGAGAGCACCTGTGTGTCTTCG-TAATCACC--ATGTTTTAGTCATCACAGTCAGGGTTAGCAATGCTTCCTTAGAGTCTGACCACTTT--------------GCTTTATTGCAGGCAAGC--CTG--------------------AGCTCAACTGTATCCCTTTAATTTTAATATAAAAAGCCTCACAGAAATAGAATTACTTA-----TATGTATATTGTTGACCTTCATTAGAATTTTACCTTCATTTTCTGCTTAGACGATTGGAACAT-----CTCCTCAATCCCATGAAAGGAACTAGGGTCAATTTGCAACTGTCA--TACAGCCCACAAGTCCTGTGGACTCCTGGAAGGGTAAAGCTGCCTTAAAAGATGTCACAGCTTGGACAGAAAATAATGAGTTTATAATAACTGTTGAAGTTTA-TGAAATCTTTGCCTA
s HiC_scaffold_1 131784865 2091 + 233722169 ggaaaacattttaaattaactatacaatattttttttctatctctagGGACCTAGAGGACCAGATGGTTTCCCAGGGGAACAAGGTATACAAGGTACCAAGGTAATCagtaattttcttatttcatat--agttaaattttattgaaCCTATATAATCTTCCCAAATACAGTCTACCCAAATCGAGCCTATATATAGCTCAAAAAATCATATATCACCTTAGAAAAGTATAGTTCTAATTTTTTTCGACGTTTAAACATGCAACATAAAATTTTACTACACataacaaatgttttcttttcaagaATGAGCTATATACTTGgtatcttatttctgtttctaaatttaTGCTAACGTATATAagactatattttaaattcttactaATT-------TATTTACGTTGT--TAgggtgaaaaaggaaataaaggaaaaagaggcCTTCATGGTATTAtggtaagaa--aatttaaaagttcacgTTAAGTATGAACATTTTCAATCTTCCATGTTTTCCTTGATTCTTCCCTCCGTTATTCTGAGAGGG--GAACACTTGACCTACACGGTTTTTTTCT----TATGTAGGGTAAGAGTGGAAACCCTGGAGAGAGAGGATCTCAAGGAAAACCAGTAAGTaattagaaaataatcaaaatataacaATCATCTGTGTGGCAGAGGGGTGTTTACACAATGCTTTAATTGctttatatatagtaaaatagtaaaaaatgtatatattaataGTATAtgattatattcatatatattgtAGTGATTACCTGTTTTCTCCTTGACACAACCATCATTTCATATCCAGCACATTTCACTACGAGAATAGAAGTTCTCTTCTGCCTTTAAtcattgttatgttttatttgatcAAATTACATATCCATTCTCTGCCTTGGTTGCATCTACTTTTAAACTGGTGTTAATACCCATTACTTCTTCCTAGCTGtgaaaaattagttttttttttttttggtaaaactcatttcaaaataaaatcgtGTGATACATAAATAGAATGGGACATAATAAAGCTAATATAAGAAAGTTATTTGAGAGCTTATATTTAGTTACCTTTTAACTCA-----------------------GTTGAATAGTATTTTAGACCACTGGAATGTGGTTCTGTGTGTACTTTCACACAACTCATCTGTAAATGCATTTAATG-TTTATAATGGTAGATATTTTCCTTTTGTCGCACATCTTGAGAGAAT--TACACATTTTAACATAAGAGGCAATAACTTATGTGCTTGTCACCACCCAAtgcaagatta-aaatattttaaaaagacaaaaatgagtcACATAGGCACACCTAAACCTATAAACATAAGATATCTATGTCAACACATAAGCATGAATGTATAAACATTTCACTCAGAACTAAAATTTTAATGCCA-TTTCATTTATCACA--GACACGTCT--TTGTATAAAGTTATAAAACTATATAGAATAAACAAATCGCAGATAACGAGTCAGGGAAG--CATAAGGTAAATGCTTTAGTTGCTGAATCACCAGTTTCATTGA-------ATTTGCTCGTTCGTCTTT-AAATCTGCTGCCCCCTGCCTGTGGTTTGTCGCAACAGCATTATATTTGACTG----------------Gtcagaaaactaaaagagaaaaaaagac-attctaGGGAAAGA-AATTGTGTTTGACATTGTATTATAAACTAAATTCCTTCTCCACGCAAAATAGCCCTTGAATGTGAACATTTATCAgctgactttttaattttcaatgtaaaagcTA------CTTCTGTAGATTGTCACTGCTTCACAATACAAGGCAAGTTGTATACAAGGCAAGTTGCTGCAATTAGTAGAGAAATTTGAAGGTCAGCTTTAttcctc--atttt------------tttaaagaaataaaattatttaataattttgccCGTGGTTGACCTTTCTTGCAATTTTATCATCACTTTTAGCTTGGGTAAGCGTGATATTTGACTTCCTTAATCAAATCAAAgacattaaaatcattttataatctTAGGTTACAATAAGCAAGTTGCAGAGACTAATGGAAAAGTAGAATTACCTCCATAGATAACATGGTTTACCCA-AAATTAATGAGTTTGT----ACAGTTGTGATTTACTGTGCTCTATGCCTA

a score=30428
s chr3           145447498 2080 + 160039680 AAAGAGAAAAAGATGAGGAATGCATAGAAAAAACCCACAAGCAAAGGCGGGCGTGTAAGCAAAGGCAGGTGTGTAAGCTAGCTAAGGCATTTTCAGATGCGCTGCTTTTCTACAAATTTCTCATTTGTTTGTCAAGGGCTTCCAAGGACTGCCTGGCAGCTCAGGAGACGTGGGGCCTGCCGGAGAACCCGTAAGTGTCTCTATGTTCTTCTAATGGTGGCATTCCTATGGGGTCCACTTAT-TTTCCATGACTG-TGTCC-ACAGTGCTGAAGGTGACTTTGCTTTAGAAA-CAATATTGACCCCATATAGCAAAGACAACGCCTATAGAATGGGCATTTTACTGTATCAattctgcaggatacaaacaaataaacatacatacatacatacatacatgcatacatgcatacactgcaggatacaaacaaataaacatccatccatccatccatacatccatacatacatacatacatgcatacatacataaatacatatgtgtgttggtatTATAATTTTTGTTGCTTTTATGGCTCTATGTAGTCAAATATGGTGCTTTTCTCTATGACTGTTAAAATGAGCTTATTTCTGTTTTTGAAAAACAAAAATCT---TCAGTGACGCTCAGAAATATTCTTTCTGGATAGCCTGCAGTTCTTATAATTGGTGCATTACCACACACAGAGTCAA-----------TAGCTCTATAATGAAAG-CCATGTAGTGAAGCCAGTCTTTGTATCTGATTGGCCTAAATATGCAAATATGATAGAAATGCTGTTGCATCAACAGTACAAAAAC---CAT----ATGCCATAGCTCTGATTCAGTTCTGGAGTTTCAATGGAAAGGGCATTGAGCAAAGGGAAAAACTCCGACACA---CTCCTTTCTCACATCTTAGCCCTTATTGCCAATGAAGTCATTCTTTAGCGCAATCATGTCAGATGTCAGATGCTGTAATGTGCTTT-----------------------------AGCCACTGGGTTGATATTATCACCAGTTGACAC-ACTGTTTGCAGGTGGCCTTAGCATAATTAATTTAGTTAGTA-ACAGTGGAAAAGTTT----ACCAAAGAGTA--------AAA---GGTTCAC--------------ACTTGACCTATGACATAAGCTCATCGAACAATAAGGGCT---------------CACA-----ATGTGTGTAGTTCTTGCCCGAT--AAATATCTAAGATGTGGCATGATCTTTGCATAGCTAAGCCTTTGGTT---TGCTCTCTGTTTTATGTGCCTCAACCTGCTGCGCCATCACAAATGTTGATTTGACC-TGAAATAGCACAGTGCTCTTTTGCACAGCTTGGTTAAGTCTCTG--------AAAACCCCACAAGC-----------CAGAGACCATCTCTTTACCTTTGTGCTCTCCATCCCTGGTGCAGTGCCCAGCAAACTCCATTTACTCAATGTGTGCTGGTTCCACTGAATAAGC---AAAGGGTCTGGTACCCAACGCT---GTCATGGACACAGTAAGTAACATTA--GCCTGGGG--AACTGGTATGAAGAGCCATGAGATTTTATTAGATAAATGTGTCACAATGGGAACAAAAATCTTAGGATTTAAATGAGGAAAGACTTATACtttttttttacttctttttattaagtattttcttcatttacatttccagtgctatcccaaaagtcccccataccttcccccaccactcccctacccacccactcccacttcttggccctggcgttcccctgttctgaggcatataaagtttgcacgaccaatgagcctctctttccactgatggccgactaggccatcttctgatacGTTATACTTTAAATTGATACAAGAAAACACTTCTTAAGCAAAATGGCTTAGTAGTGCTTCAAATGTCAATGTGAAGGTCACGGAGTCA-TGGAACTGGTAAATAAAATATAAACCAATTTATGATGGAT-TAGCAGATTTTGGGGGCATACACTTGAACTA-ATAATTCAATCATATAAATGAAGGAAATTGGTAAAATAAGCACAAAAAA----TGAAATGTATTTTACATTTCAAAAATAACATAAGA--ACTACAACCATTCTATAACAAAAATTTAAAACTCTTTTCTCCATTGTAAGGCAAGCATTGCTA-TTAAATAGGTAACTATCCATTCAGATTCAGTCAACAATTATTT
s HiC_scaffold_1 131805260 1823 + 233722169 aaaaaaaaaaaaagaaggaagacataaaaagaatCCATAA-------------TAAAAGCTAAGG--------TAAGGAAACTGAAACATTTTCAAA--CATTACTT--CTacaaatttttcacttatttgtcCAGGGTATACAGGGACCCCCTGGCAGTACAGGAGACAGAGGACCTGCTGGAGAACCAGTAAGT-------TATTTTTCTAATTGTGCTTTTCTCACAATGTACAGTTACCTTTTCATTATTACTGCCCTACTGTGTTATGACTGG-TATACTTCAGAAAACAGCTTTAATG--GTAGACCATAGACCAATTatgtagaataaatattttactgt-----------------------------------------------------tgTATCACCATACACT-----ATATAAA-------------------------------------------------------------ATGAATACA-------GTTTTTAATACAGTTTTTAATGCCTTTCTAACTTCACATGGTAAGATTTGGTACTTTTT-------CTCTCAAACTAAACATATTTCTATGTTCTACAAAGAAAACTCTGTTTTACTGAATCTCAGAAG----CTTTCTGAATGGCTTGCTGTTCTTATGAGTATCATATTGCCTCACACACAATCACATTTATGAGGCTAATCCTATAATAAAAAACCATATAGAGAAGCCAAACTCTACATGTGatggtccaaaatgtacaaatataaCATAAATGCTGTTGTACCA-CAATACAAAAACTTACATTGCAATTTTATAAACGTGACTCAATAAC--AGTTTCCATGGAAAATGAGTTGTG-AAAAGGAAAGACCTAGTCACAAGCCTACTTTCTTACAATTCATTCCTTATTACAAATGAAGTAATTCTTCTGGTTAATCATGTCACATGTAAGATGCTGTAATGTGCTTCTAAGATTTATAATACAATGTAGTCTTTCAAACTACTTGGTTGATTTTATCATGAGTTGACTCAAAAGTTTACAAGTGGGATTTGCATTACTCATTTAGGTAGTAGAAAGTGGAAAATTCTAACAACCAAATAATATTCTTACCAAATTGtgttcatttccttctttatgaACTTAACCTATGGTGTAAACTCTCTAAACAATaagtaatatacatatatatatacacatatatatgtatatatttctttccaaattaaaaaatctAACCTATGGCATTGATGTTAATCAACTAAATCCTTTATTAACTCCTCCCTGTTTTATGTATCTTAACCTGTTATCCCAATTGTAATATTTATCTGACCATATAATAATGCAAATCTTTTTACCATGGTTTACTTCAATATCTGTTTCCCTAAACAGTCCATAAgcgtttcaaaatgaaaagttacTTTTTTTGTCCTTGTCATCTCCTCTCCTGGTGTAACATTATGCATATTAAATCTACTCAATGtgtattta-aaaactaaattgaCTTTAAAAGAATGCATACCAAAAACTATAATCATTCAACCAATACATAACATTATTACATGAGGTAAAATGGAATGAAAACCAATCAGCCTTTTGTAAAGAAG------ACATT-----CAAGCAGTTAAGTATATCAGT-AGAAAGGACAT---------------------------------------------------------------------------------------------------------------------------------------------GACACACACAAT----------------------------------------------ATCTTATGAT--------CTT--------CACAAGAAAAGACCTT---AATGAAGTGACTTGACTGCAC-CCAACACTTAATGTGCAGGTCATAGAGTCAGTGGGATGggtgaataaaatataaagcaatatataatagatatagtGGACACT--GTGCAGATATTTGAGCTGTCTAGTGTAaccatagaaaagaa--------acaaaattggcACAAAGAAATATTGAAACA---TTCATATTTTGATGATGATAAGAGATGATGATAGCTTTTCTATGGAAAAGATTTTAAACTGATTTCCTCATTACAATGTAATTATGTCTGTTTGAATAATTggccatttattc--attcactcaacaaatattt

a score=26608
s chr3           145454434 2277 + 160039680 AGCACAATATTTGATAATTATCTGGTATTTGGTAAATG----TTTGT-AAATGAATGAGTGAATTAAGGAATAAAACGT--AATGGTGCCCCTT-----GCTCTATTTTTACTTTGAGTACAAGCATAGTT-AGCATTATTCATGAAGCAACACAGATGCCTCAACCAA-GTTAAAATTGTATTTATACAAAGAGCGAAGTAATATGTCAGTCAC------ATACTAT---------------TTATTAAAATGAAGTTGAGATGTGTT-GTTTATTAAAA--GGGTAAACTTTGATTCTCATATTTTCAAT-TTATTTGAATATAGGGACCACGAGGACTGCCTGGTATTGCTGGACTTCCTGGAGAGATGGGTGTTGAGGTAACATTTTTGTGGTTCATTCAAAATTTT-------GAATCACTGTGTTTTATAAAAC---AAGGTGAATTGAATAATTAAGTATATGTCAGGGAGAACAATTTTATAGAATTTTCCTTTATATTTAGAAAATAAAACCTAAAACTATATAAAAGGCAGAAATAATCAATG-------------------------TCTGGAGA-----------------------------------------------------------------------------------------------------------------------------------------TAATTTCATGCATACAAAGTTCTTTCCTCTAAGAACTAGCTCACTGATGGGACAAAAAGTGAATAAAGATATTCCTTCACTGATGA--GAATTTGACTTGATAGCTCTTCACTCTAAGAGGTGGCGGTCTTTAGAGAATGGGGAGCTTTGGCATCGCCTGATTTACTATACCATTTGCACTAATAAGCCACGTTTGTTATATTCATAAAATTCAATCACTTCA----TTTCTGTTTCTGACTTTAG---TAACAAAACTGTACATTTCCCCCA-CTTCCCTGGCACCTGTGAAACTTATCGActgtcttctgtctgtctgtctgtctacctatctatcCCTATCTCTTGCTTCCTCACTTCATTATCCTTTCTCAGACTC-ATGTGGAACTGCCCTTCCACCTCCTCAGTTTTGCCGACTGGATACAAACTAATGTCACCATAAAAGCCGTCAACCCATGCCTCTCTT--CTTTAAGCA--TCTGTTGACATC-----TTGATGGCCTTTTATGTATCT-----ACCCACCTAGATAGCCCCTAAACATCTCATGTGCAAAATCTGTACACTCCTGTTCTCCTGTTTCTACATGCAAAGCCCATTAATTTCCT----GTCCTTCTGTTTTCATGAGAATCTCACTGAAAGGT-CACATGATGCGCAGTACACCCAACCTGAGAGTCATCCTAACATCTCCcttcttcaccctctcctcattttccctcctcctcttcctcctcctcttctc--cttctcctcctcctcctcctcctcctcttccttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcccttcttctCTCCTTATCATTTATCTTTGAATGAGCCCTTCC-------TGCTTTAAATCTATCCTTCTCTCTTCAGCCTTCCTGCAA--AAATCAAACCTTCCACCTTTATGCCATGTCTCTTCTAACTCCCGGCAGGCCCTTAGCTAATCATCACCAGTTAATATTTCTTGTAACATT------CTTGAGATTCTTTGAAAGT-TGCATAACCTTTACAATAAATA--TCCACTTTTTTAAAATCTTATGTACTTTGTTGTTTAAAAAAAAGTTT--AAATAAGAAAACCACACACCAAAATTAACTGAT-TTCTTAACACAATAATTTCTATATGGTTTGCTT-----CTCCTCCTGGTCTTGGTGACACAGTTCCTCTTCCTTGGCCAtgccatgcctctt-gctgtgcattcagcaggggatgcaaggatg--caagatgaggtccctgactcctgtacaagctcataatctatttcagagtacagtcaacatcaacagccactatattgcaatgggtcaggctcagtaatgcagaaattgatagggaaatagaggaacagagcagttgctgcttgaccctgcctgagggagaaagaaaataagac--atgaatatgggaacat-----------taaaaaaa--aatgagattgaaggcacaagaaaggagtttcagtgagaagagaaaggatactacagatgagggaaTCCCAGAAAGAAGGGTGGCATTCGGGAGATCCTCAGACTGTGGGGCTGTGTAGAATATTGACTGTCA--ACAGAGAATGGGAAGGGGCTGGAAGGAAACCATGAACAGTCTCGAGTACTCTACTGAAAAGCTTGAGCCTTTTGTCTTGGGCTCTTATAAGTCATCA---TATAAACAAGGCAGTATGAAGTCAGACTCATATTTTGAAAAAGTAATTCTAGCAGCTGAATGCGAAATGTTTCTCAGCAACAGGAAGTAAGGATAGGTCTACTTATTAAAAG
s HiC_scaffold_1 131813137 2242 + 233722169 AGCACATTATTTGACA-----CTTGTAGTTAGTAAAtgaatgtttgttgaataaacaaatgaattacagaataaaagaataaatgatgtttcttttgttgctttttgtttattt--aatccAAGCATAGTTTAATGTccatcataaaacaaaacagatgaatcATCCAAAGGgataattttgtttatatattgagTAAAGTGATACATTGATAACTTTATTATATTATGTTAAATATGTCacattatttatttcataattagatgcatttatatattgaaataaaataaactttgattctccaattttaaatattatattaatacAGGGACCACGAGGACTTCAGGGTGATGCTGGACCTCCTGGAGACATGGGTATTGAGGTAGTATTTTGGAGGCTCTTTC----TTCTTCACTGATACTCAATACCTTTTGTAAGACTGTAGGG-------------TAAATATGTATTATGAAGAGAAATTCAGTAGTATTATCTTCCATACTCAGAAAATGAAACTAACAGTTCCATTAACAGCAGAAACAATTATAGTGGAGCCTCTTTGGGGAGGGgatcttttggagacagggtctcattatacagttcaggttggccctcaactcactttgtagcccaggatggccttgaattcaggacgcttctgcctcagcctcccaagtcctgggattacaggcatgtaccaccacacctggtttggaACTTAATTTTATACATATGAAGTG-----TTCTATCAATTAGCTTATTTAAGTGACAACA-------AAAGTTAAACTTTTATCTCTGATTTTAGTTGCTTTGATAGTCCTTCATTGTAA-----GTCTTTCTTCATAG---GAAGCATTTTGAAGCTACTCTATTTAGTATGTATTTTGGAATAATAAACTACATTTATTATAGTTAAAAACTCTAATTACTTTAGTATTTTCTGT---TAACTTTAGTTctaaaaagattttctttcttttgcatcctCCCCTGTATATGTAAAATT-----ACTGTCTTGGTTCT-------------------------------TCACATTATCTCCTTATTAGTATTTCTCAGTCTTGAAATACAATTCCCCTTCCATTTCCTTGaattaac------------aaaaaatattatCATAGTGACTTCCAGTATATTATTCTGATAACTCTAATTCTTTCTATTTACCCCAGTTACTGattcccttttgtcttttttagacatTAACCTATATATTCCACAAA-ATCTCAAATTCA----------------------------------------CCCATCACTTTTCTACTCATCCTCCCTTTTTCATTCCCATTTTACTGAAAGATACTCCTTATATCCAGTGATCCCAAACTGAG-------------------------------------TTGTCCTTGGTATTCCTCCTCCATATGTTCTCAAATTAGCCATTTCCTC---------------------------------------------------------------------------------------------------------TCTTTGAGTAAGCCCCTGCCATGTTGTCTCTTAAATCTATCCTTCCCCCTTCATCTCCATTGCTATTACTCTTAATTCTCCATGACTACACCATGGATTCTCCAACTGTCATCATTCCATCAACTACTATTTGCTAGAC----TATCTTCTGACATTCATTTCCTTGGCATTTTTCAGCAGTCCTTATAATCTTTGGCATAAGTAATGCCAACTATTTAACACATTAAATAATATTCTACATGGTCTAAATTCTGCAAACATGCCAACTACATTCCCAGCAAAACTTTTGTTCTT--CCCAATGTTTCCCA---GgtttgttgaattatttctcaTAGT-TTGTT--TATAGTAAGCCTTCCCCAGCCTT---CTGCCTTTTCACTGTGTA-TCAGTAGGAGAAACAAGGATGATTAAGATAAGGTCACTGATTCATCAAGGAGTTTATAATCTAGTTCAGAGGACAGTC-atataaatgatctttatatTGCAGTGTATTAGACCCAGTGATACAGATATTAACAGGGTAATGTAGGAACTCTGAAACGGATGTGTAATCCTAcctgggaaagggaaaaaataagacTTAGGAGTATGTATGCATGTTTATCAGGGTGAAAGGAGTGATGAGTTTTAAGA---AAGAAGTTAGTTATATGGAAAAGAGGGAG-----TAAGGATAAGGGAATTCCAGAAAAAGGAATATTATGAATAGGAACCCTCAAATATGCAGCACTGTAGACTTTT-----TTAGTATATAGCTTCAAAATAAGGTGGTAATAA---------AGTTT---GTACTCtgttaataaaaatgaagttttctttATAGTC---TATATGTCATCATTGTATAGATAGGGCAGTGATAA---AGATTTGTATTTCAGGAAGATAATT-TAGCAGCTGTATGAAAGAAGCATTTGAGCATACAAGGGTGaagacagaaatatttattaaaag

a score=32661
s chr3           145458436 2441 + 160039680 aaaaGGAATAGAAGAATGGAGTGAATAATAAGACTGGGTAGACAAAAGGGACACAAAAAGAA-CAAAACAAAATAAAATACCATTTATGCTTCTGGGAGACAGAAAGACTACAACAGCAGCTATTGAAGCCTTAGACCTTGAAAGAGCCAAAGATGGCCAGACGTTGTATTTTCAAG--TCACCATAATCAAATCTCCCCCAACAACACTAGAATCACGAAGCAAAAAGACTAGAAAAATAATTCCGTAAACTACTTTTTGATGTGACAACTTTATCCTTAACTTATGTAGTATATTTTATTTTGAAAAGATGAAAAATATTCATTGATCCTAAGGAAGGTGTTTTTGATGGGCACAGGAGGAAGGGACA--------TAATTATAACGGTAGAGAAATATTTTTAAATCTGAGGATAGGAAGTTTGAGGCTGTATGAAGTA-GTTATGCCATACTCTCTAAGATCACAATGATGAGAGTTTGGGGGGGGGGGTAAATGGTCCTATTTGTTCTGGTTTTGAGTGAAGCTGTTTCTGATATTTGAACTATTAAGGAATACTAGAAAGTGTCT-GTCTTAGGCTTTGAAGTTTGTGTAGAAGCAACCCAAACCCTCTTCT---ACACACAGA-CTCACCTTTGAGCTGAAACTCAAACCACCTTCTTATGGGTTGGT---ACAGCCCTTGTACCTTGACAA-TCTTTCTCTTTTAGGGACCTCCCGGCACTGAGGGAGACTCTGGCCTGCAAGGTGAACCAGGTGCTAAGGTAACCAACCATTCTAGAGTATAAACGGGAAGCCTATCTCTAACTTAACACCCATACTTTCCCCAGTTTGACAAACACTGGAGGGGGGCAAGGTGgagacagtgtttcactgtgtcgcctgggctgtagtagaactgactatgtagagtaggctagcctgaaaactcagaaagagccactatatccaagtgcttggagtaaggtgtgagccaccacgcccagGGACAAACGCCATCTTGAAGGCAGATGAAGGCCAGCCGTCAGGAGAGCAGAGATGTCTCTTATAATATGCACTC--TGATTAGAAGAGCAACTTGAGCGAAGAAAAGCTTAATTAACCTTCCCTTTGCCTCTCCAGGGAGATGGTGGACCTGCCGGCAGTGCTGGAGCCACTGGGGAGCCGGGGCCGCGAGTGAGTACCGA-CAGTATCAAACTGAATGCACCGACCCACTGTTTGGGGAAACTCAAAACTCAACTGCCCTAATCGCACCAAAACGTAGTGTAATACGCCTATCATATGCACTATGAAA-------------TGTTTACTGACTTTAAAAACTACACACTAAACCCCGTTTACATTCTAAGTTAGGCATTTGGTGACTTTTCTCAAAACCAGGTGTGCTCTAAAGAGCCTTGCCAAAAATGCGTGGAAACGTGGCTATTGCTTAGCGATACCTGAAGAAGTTCTCAAATCACTGATCGACTCTCAGAACATTGTCTAACCTAACAGACTGATGAAAGCTTGAAATGTAATTTGTGTTTAAAAACCACCCCAGGACCTTGTGAAGCTAATGAGATGCAAGGAAGTGTTTATGAGTAGTTTTAATTTGATAGCCTGGAAAAGTTATAATAATATAGACCGGCT----TTAAGC------------CATGGTTTTCCTATAATACCAATGTTCACAATAATT-----------TTTCACTACGAAGATAAAGCATGAAGATTCATATTTTTTTGCATCTGGTTTGTTGCTCTGAATTTTTC---TTTTAGGGACTTG--GGATTAGAA-TCAGCTTAATACAGGGATCATAAATGAGAATGGTGTGGT-TCTATTAATTAGTACTGGTTAATTTACTTTAACTTAAT-----TATAAAGAGAGCAACACTG---CCTTAACAGCTTCATAAGGTATGG-TCGATGTTTTTGCAAGTTCTATATCTAAAAGGTAGTTTATGGATGTTCCTTGACCGTAATCCTTGCCTCTCT--GAAGGGAGAAAGAACACAAAATGAAAGTCTAGTAAAATGCTCATGCCTGAGTTTGGTTACATTAACCCA-TGTAAGTTCACTATCGCAAGGAACTGCATTTCTTACCAAA-GCAGTGTTTACATTCCCTGATCTCAGAGGCACGATCTAGCTGGATTAATTTCCAATCTCCAGACAAATA----------TTAATTATCTAAAATGTATTAGTATTCCAGAAGCACACTGCATTTGAACTTACAACAGTGACCATCTTAAGCATTGCCAGAGCTCTTCCAGGAAACTTCAATCACGTGTGTTCCACTGTCAAGTCCTCTTTAGAGATGAGATTGAAGTAGGAATAAAT-ACTGCAAACTAGCTACTTCCTATACCTACTAGGGGCAAACTGCAAAGTAAGATCAATGAGATGACCAAAATCTTAATCTT---CCTTTG--CCTGCTACCAAATAAAATAGGGAGAACCAGGAGCCCCTGGAGAAGAAGGTCTCCAAGGAAAAGATGGGTTAAAGGTAAACTGCATtatgta
s HiC_scaffold_1 131817409 2059 + 233722169 aagcagaaagaaagaaaggaaggaaaagaaaga---gaaagaaaagagagagaaaagaagaagaaaaacaaaacaaaaca-----------------------aaaagttatgcCAGTAATTGTGGGCAGCTCAGGCCTGGAGATAAGCAGTGGTTGAAAAaagttttatgtttaaaaataaaaataacaaaaagtttcCCAGcaaagcttgtgtg---------------tgtgtgtgtgtgtgtgtgtgtgtctgtgtg-tgtg------------------tgtgt-gtgtatgttcataaacaaacatagaaaa-atgGATTTTTCTGAAGGGAGTAGGTTACAgagagcacaaaagaaaaaaaaaacagatgggaAGAACAAAATTGAGGAAATACCTTTGTATCTGAGGATAGAAAATTTGAAGAAGTAAAAAGGACACTGTTTTATATGCCTT-----CATTAAGAGGAAGATT-------GGAAGAAACTGATTTTCAGAATCCCAATTTCAGATGAAGCTGTTTTAGCT-CTTGAACTGTTAAAGGATTCTAGAAAGTAGCTAGTCTTTTCCCATGAAGTTTTTAAGAGGGCAGAAAAGAATATCATCTGGGACACACATATCTTATTCTTGAGCTAAAAAGTA--CAGACATCTTATGAGGTTGTCTTACTGCCTTTTTAATGGATCAAGTCATTCTCTTTTAGGGACTTCCGGGCATTGAGGGAGATGCTGGTCCTCAAGGTGAACCAGGTGCTAAGGtaacttttc--tttaaagtaaTAA--AGAAG---GTCTCTAA------------ACTGCCCC-------ATGAAAGTAGGTGAAGGCCA--------ACAGT--------------------------TAAAACTTACCATTT---------------------------------------------TTTTTGG------------------------------------CATCTT-------------------------------------TACTCCTTATAATGTATCCCTCATAATTAGACATTCCATTTTAGTAAAAAAGACTTTATT---CTTCTCCATTGATTCTTCAGGGAGATGCTGGAACTGTGGGCAGTGCTGGAGGAGCTGGGGAACCAGGGTTACGAGTAAGTACCTAGCAGAAACCCTTTTAATGCATTTACTTAACCATTTCAGGGACTCAAAAGTTACTCGCCTAAACATATCCAAGAAGTGGCATAA---GCCTTTCTGATCCACTAGagaaaatgtgtcttttttttttcctgatttcaaaaaCTGCACACTAAACCCTGCTTGCATTCTCATTTAG----------------------------------------------------------------------TAGCACTTAG-------------AATTCTAA---------------CCCAGTAcatctttt--tctaaaaatttgagGCATTCTGAAA----AACTCTTGCCAATAA---------------TGTGGAGTTACTGGGA-----------------------TTTGAATTTGGTAGCTTTGATAAGTAATGCTACTACAAACTACTTCCTGTTGGGCTATTACAGCaagcatttttttccaaaaatagcagTGTTTAAGACATTTAAGAGGCATTCGTTCACTA-AAAGGCAAACAAGGGAG----ACATATTTTTGCATctggttcatttctttttattttccctgttttGGGGAGTGGATGAGTTAGAAGTAAGGGTAATGGAAGCGTCAGAGATGGGGGCAATGCAACAACTATTACTAAGTACTGATtaagttactttaaaataatttaggtATCAAGGGAAC--CAGTGAAACTTTAACAGATTCATAAAATGTGATTCTATATTTTGT--AGCTCCATATCTAGAAGGTAGCTTCTTGAAGGACTGTGACCtaaatctttgctttttttgtaaaggagaaaatatataaactttAA-TGTGGTAGAATGATCATAACTGAATCAAGGTATATtaacttattttaaattcattatagCAAGATACTATATTTTATGTGAGATTCagtgtttacatttcttgaacTCAGAAAC------------------------ATCTCCaaatgaatatatgtattttttatttatataaaacttaTTAATATTCTGAAACTATCACATGTTTGAATTTACAATGCTG-------TAA--------AGAGTGATTCAAAGCAAATTAACTC------------------AGACTTTCTTAGAAACAAAgtagaattagaaataaatgaatacacacttgcTACCCTCTATACATTCGAAGgataa-----aaaacaagataaatgacataaacaaaaaagtaagCTTAACTCTTTGTTTCTGCTAC-----AAAATAGGGTGAACCAGGAGCTCCTGGAGAAGAAGGTGTCCAAGGAAAAGATGGACTAAAGGTAAAT--CATTTTGTA

a score=51507
s chr3           145461304 3827 + 160039680 [encoded data, 4299 characters]
s HiC_scaffold_1 131819497 3679 + 233722169 [encoded data, 4299 characters]

a score=14118
s chr3           145468347 1198 + 160039680 aagaaagaaagaaagaaggaaa-gggaaagaagaagaaaggaaagggaggaagggaaaaaggGAGA-------GCTTGAGGAATCTCTCA------CGTGGCTTTAGGACTGTGTGGATGGAGCTAGGAATGGTGCGTTCAGGAGAAATGTTGATGGTCCACTCAGTCTAGCCTCCTCTTTCAGAAGGAGGGGTCACGTGTAAGTGGGTGGGCCTGGGATCAAGAACATCCT---GGCCCTGGCCTCACCCAGGGAATGGATCCCTTCTTTCTCTGACAGAGAAGAAGGAGGCAGGTGTGTATGAGCGAGCCACATGTGTAGGAAGGTTGGG----GGAAGGAACTTCACCCTCTAATTTGATTGCTGCAGTATCTTAATGAGCTGTGGGACAAGACTAATGACTTGAAAATGGGGCGAGAA--ATGGTTTG-AAAGCAGAGATGAAGGTGCAATCTATCTTCA------AAGAGGTGCCTCTGTCATA---------GGGACTGTT-----------------ATTAACCATGTCAACGCTTTCATTTTAATCATGCGTTTCAGACCCACAAACTGCAAGT--------ATTTCCATAAACA-AGTGGTGCCCAAGATGAATTGGTTGTTGACAGGTGG--GCCACACATATCAGCGAGCACACAGATA-TTGAGTTTGCTTC--ATCTAAAAATATTGATAACACCTAAAAGTTTTGTGAATTTC---CTCATACCAAAACTGTATTTTGTTAAACCAAAAGTTTAACATTTTAAAATATTAAAAATGTGGTAACATATTTTTCAAAGTTTAACACAG-AAATACAGTCACTCCAATAGATGAAGCAAAAAACATTTATTAAAGCATTATATTAACAC-TTTCACTATTATCCTTAGCAGGAAAATGTCTAAGAAATGAGCTAAGGTTGTCATT----------TCTCCTTTCTTCttaatattaat----------aacaatatttaca--tataataaataGAAACAC----TTGTATGATGAGGTAAATA----TTTCTATAAATCATAA---------------TTAGTAATTCATA----------AGAACAGCTTCTTTGTTTCTTTAACA--ACATCAAAG---------------AATTTTATTATAATAAGGAACAAAAGTTAGTGCCTTGGATTATGTCT--TAAGAAAGTATTTGTAAAATTTTGTAG--ATATTTACAATTTGAGAATAATATAACCTAAATAAATCCTAAGAGACCTAAATAAATGGACAGAGTTGTAACAACATTCATGTCCAGGAAGACTTACCATTGTGAAAACATTTCAATCTCAGTTTT
s HiC_scaffold_1 131825133 1290 + 233722169 aagaaagagaaagaaaagtatatgggagaaatcaatacatgaaa---aggaagggaaagatggAGATTCGTGAGATCAAGGAATTTTTTGGTAAGGAGTAGTTGCAAGCCTATTTAAATACTTCTATGAATCATCCAGTAAAGAGAAACATTACTAGCACAAGTAAGAGAAGAGGTGCTTTCAAAAAGGAGGGCTTTGGATAAGAAAGCCAGAATGTACTTCAGAGCACAACTGAGGAGCTGGCCTCAGCATGAGAATG-ACCCTTTTTTTCT---AAGGGGCTGGAGAGAGAATATGTGGCTTTGTAACCAGAAAGTTAAT--AGATTAGGCATAGGAAGAATTTCCTACTCCTAACCTACTTGCTACAGTATGTTAGAGAACTGTGAGGCAAGGTTACTAACTTAAAAGTGAGGCAAAAATGAAGATTTGAAAAATGGACACGAATGTGCAGTCATTTATGGATTAGTAACAAATGCCGCAATCGCACACATTTATGAGACTAATTAATGTgtttcagcagcagcagcagcagcagcactgtcATTGTGATGATGCactgaaaactcagaaaatattaGTATTTAAACATTTACACATACACACTGCTCCCTGCACCGAATTGTTTGTTGGCAGGTAGTATCACCATGTGTCACCtgataaatttatatttgaatttgCCACAGATCTGGAGG-ACTGAT-ATAATTCAGGGTGGTATGAATGGCCATCTTATCCCAG----------TATTACAACAAACGTTCAACATTTTAAA----TAA-------Gtcatatactttatata-ttaagcaaagaaaatattatcaTCCCAATAgatgaaac-aaaaacatttagtaaaatttatttttcacacatGAAACTATCATACTTAATGgtgaaacttaaaagaaaaaaactaagattacCACTATAATTTAAGCCTCTTTGAATGTTATTAGAAATTATCtagtaaaaaaatatttaaaactatagcAACTCAAAGTCCCAGTTAGtatactgaaagaaaagaaacaatctaTAAATTATAAGAATCATGAGAGACTTCAGCAAAATATAGTTAATAGACAAAATGGATTCTATTCTTCtttatcaagaaataaaagctatttttGAGTAGAAATTTCTATACTACTAGCAACAAAATTGAGTGCCT--AACTATATCTACtcaaaaaatctat-taaaaatttgtagaaaaaaatgcaatttgaAA-----AACACTGTAATAGTTTATCAAAAAGCTGaataaatggata---tttt------attcatggataggaagtcATAATATTATGAAATTA--------TCAGTTTT

a score=30532
s chr3           145471125 1274 + 160039680 AAAGTTCAACAGTTAAAACTCTATGCAAGCTAATCAACTTCTTTTGGAAAAGTTGTTTGTCTGGAAGGAAAAGTCCTCCATTTAGCACAGCTGCCATGTGTACCTCTAGGCGCAGCTGTG-CTACAGCAACAGGACATGGCTACCTTGG-------ACTCAGAGACT----GAGACTAGAA---TGTTTGCCGGGAAGTGTAGGGTGTGAGTCACTTCCTCGGGGATCTGtttatccattcaacaaatatttatcaagagtctgcATAGCACAGTGGTAAACCACCATTTATTTCTTGTCTGCA--------GAAGCTTGCCAAGCTTC--------------------GGGGACACAAATTTGAAATTTCCACTTCCACTTCCAACTAATGAAAAGAAAGCTG----TAATTATTACTTATTTTAGGACTGGCAGCCCGGCCCACTATTGATTACA-------------CTTGCCCATTGTTGATAT-AAACTCCATATAGTACCCTACTCTTCC---------------------TTTAAAAGCTCGATTTTGCAAAGTAAACAAATTACCAGTTGAAATTAAAATATTATTTT----AGTTTACTGTGACAG---CCCTTTTTCTCCCTGCCTTTCCTTTTCCTTTCTTTTC-----------------ATCTACTTTTTATTCTCCACTTCAGTAGTATTTTAAGACTTGCCTTGGCCA-----TGTAGATATATTTTTA---------------------------------------------------------------------------------------------AACCTCGTTCTTTCAACAAAATGCTGAGCTCAGTGCAGCTCACTAGAATACACTGGG-------GTGCACCTTCATCACGTTCACAGTAATTACAGTGGGTGGATTCCAGGA------GATTTCCTTCCTAGAGAACAGTTTAAAGTT---TATGTTGACCACATG--TGCATATTAAGTTTATAGCTTGGTAACAACTCTGCCTTT-AATCATTGTGCCCATGTGAGAAATAACTATAC--ACATAACAGTGTTGAAAAATAACCTCTGTTTGATATTTAGTGTTTGTTTTAATTATTATCTGATAGAGGTATTCAAACCTCAGGCTTTTTCTTTAATCATTATT--TCTTTTCTATATCGAATGATCAGGGACCTGAAGGAATTGTGGGAACCCCGGGACAAAGAGGTCGACTAGGGAAAAAGGTAATTTTTTGTTTTTTACATCTTTTCGTGTGGGCTTTCTTCCTTCTCCTGCCTAGAGATCTACAGAGTACTGTGATGCTTGTATTTGCATTAGACATAAAGTGTAAAGATTCATAAATGTGTCATTAGAGCA--------------GACGATTAATTCAA--TAGGCGTGCATATTACTGTCATTGTCT-AAGGACACATTTTCTTCTTTATAGTTTGGAAGTCAAACTTTCTTTTGGTTCT------TATTTACCAAAAA
s HiC_scaffold_1 131827880 1478 + 233722169 AAAGTGCACACGCTTATCCTCCGTGACAGTTAACCAGCCTTTTTTTCAAAGGCC--TTGTTAGCTACAAAGAACTCCTAGAAAAGTGCAACTATCGTTTCTGTCTGTGAATGTAGTTATAATTATAGCAACAGAGCATGATTGCTTTGGCCTCTATATTCAGTGACTTTCTGAGGCCAGAAGACCATTTGCTGTGGTGCATAGGGCATGAGTCACCTTCTTAGGTatctgtttattcattcaacaaatatttcttaaaagccTACATAGCACAGTGGTAAACCACAATTTATTTCTTGTCTACAAGATTTTTGCAGTTTGTCAAACTTCATTGTATTTCACAAAGCTTTGGGAACACAAATTTGCAATTTTCATCTTCATTTCCAACTAATAAAAGGAATGTTGTGATTAATTATTAGTCATTTTATAACTTGTAACCTGGCTTACTATGGATCATATCACACTTAAAAGCTTGAATTTTGttgatttgaaaatttatatgGCATTCCACTGTACTAAAAATAGTGTATGTTGAAAACTTTTAAGCTACTTTTGGC----TAAAGAAAACATCAATTGAAacgaaaatattatttttaaaagtttaatatgactacttccttttttctctctgtactttcttctctccttttttccccacaggtCAAAGAATATTTCCCTACTTCTCTCTACTTCAATGATATTTTGAGATCTTCTTTGaccacatattatatatataattttggtcttttctcctttttattggtaccaggattgaactcatgactgcatgcttgcaaggcaggcgtttatgccactgagctaaatccccagccccaatcctatTCTTTGACCAAGATATTGAGCTCAAAATAGCTCATTAAGGTGTTGAGGATGTATTTGTTTACTTTAATTACATTCCCATTAATTAAATT---TGGATTCtaaaattaagtaattttcttcctgaaaaataacttaatttttcctattttg-ctAAATTTCTGTGGGTCACCCTTATAACT--GAAACAGTTATGCTTCTAAATTATGATGGCCTCTTTTTAAATAAGTACACAAACATAATGTTGTTGAAAACTaactctcattt--tatttaatggTCAGTTAAACGAATATCTAATATAAATATTTGAGCATCTCATTCCTCTTTcactatttatttctcttttttatattaaatattcagGGGCCAGAAGGAATTGTGGGGATTCCAGGACAAAGAGGTCGTCCAGGAAAGAAGGTGATTTTatgctaattttatttcttcttgaa-----------------tgtCCAGAGCTCCATAAGAAGCTGTTGTGT-----------TTAGGTATAagcaataaaaattca-aaatttaactttaaaatacatttgcatAAATTAATATTTAGTTCAAGTCAGGAGTAAGTATCACCTTGATTACATAAAAGGCCAATTTTCCAGTTTGTTGTTTgtgg---aaatgttttgttttttctttatactgTTTGTCAAAAA

a score=36091
s chr3           145474071 2176 + 160039680 TCTGCTTGCCACATGTCCTCTGAGTCATCCGAGCATATGGTATAGTTAAATGAGTTAATAAATTTA----------ATTTCAGTCACA-TTAATGTCATCCACAGGGTGATAAAGGACAAGTAGGACCCACGGGAGAAGCTGGAAGCAGAGGACCCCCTGGAAGCGTTGGGGAAAATGGCCCTAAGGGTGCCAGGGGAACTCGAGGTGCTGTGGTCAGTATTTGATTTCTTTTCAGCACTGACTCACTGGGGATGGAAAAGAACCGTG--CATGCTCTCAGAGAGTCAT--CTTGATTGACTTTACAGAGGACACAAAGGTTCCACTGAACATAATCCTTCTCTGTGGGATGGCGGGAATTGCAAGCATTCCACAGT-CTTAAACAGCTTAGTGGGTTTTAGACGCG-AAGAAGGAAAGAGAAA----ATTGAAAATGGAAATAAAATATGAAATGAAGTTTTTTAAAAATCTGATTTTAACTCCAAAGTTCAGTAGGAAAGTTTATACACTGAGTACCTCAAATCAGGATTTAATATCTGTCTGAAGCTGTTGTCAT-GTTGGCAAATTGCTTTGAAAATTAAGTGAACTTGAGATGTGTTTCCATCCACCTCTTGGACCTGTCCTGCTTGAATGGGAGATTATCTTCCTAAACAGTTGGGGCAAATCACCCCAGCATCTATTAATAGCTCATCTTTTGTGTGAACTTTGCCTGACATGGAGAGCTGAAGTGTGATGCTTCTGAGCCTGTGACAGCAAACTCTTATTGCTGGTTTGTGATGAACCATTCAGAAAATCATAGCGTGAAA-----GGAAGACATTTGAAAGA----------GAATCTTCTA-----TTCATGAATGTATTTATAACATGTGGGTGCATTAATCTCTTCTCCTTTTACATAGC-CAATGCCAGGCCTGTCACCAAGGCCTTCGAGAGCCC-------GGGTCCTTTTGCTTTCTCAAGAAAATTTGCCCTTATTTACTGACACCTGAACATTCAGGCCTTAGGTCAttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttctcttctcttctcttctcttctcttctcttctctttctttctttctttctttctttctttctttctttctttctttctttctttctttttttttcGAtctctgtatagccctggctgtcctggaactcactctgtagaccagactggcctcgaactcagaaatctgcctgcctctgcctcccaagtgctgggattaaaagcgtgtgccaccactgcccggtcttaagtcagtttctgTTAATATTTCTCTGGTTTT-GCCTGTGT-TTTAAAAACATTAAATAATGTGGTTAATATTAATAAACATCAGAATTAATGCAGCCCTA-AATATTGCCCTTAATGTAAGCTTCTACTTTGGAACTTTTTCTGTAAATGTATTCACCTTTAAACATTTTTAAAtatatatttttaattaaaatataattatgaccctttctctcctctcatctctttccttcctgtgtcccctcccttgagcctctctcatgacccctccctctcaaatttatgggttccttttccttgattactattgttataTGTGTCTAAAGATGCACAAATCACACAGCCTGTGTGGTCCATTTTGTGAAGCTACAATTCCACTGTTCACATTTCATATTAATTCATTTAGTGTTTGATAATCTGATAAATGATAATATATATATATGTAATTTTTACCATCATATTTAAAATTTCCTTGTTATAACTATTTAATATATATTTCTCCTGAAAGTTTCCTGTCAATAAATATACATGTGTGGATAGGGATAGACACATGTACACACGTACATACTAcatgtttccatctggtggctattttttcttcctgatttgcaatcgttactcataagcatgaagtgttgatataatttgtcaaacatgttacagaataaattacaaacaactccttttctgtcaattatctattaattttgtgtct--tttgctaagcagaacattccaattttaat--agtcaaagttttcaatattttcctttacattttctagattttatttattcccttgaaattctattcccacataaagtatgcaaaatttccttccatattctcattctaatacatttataacattgtttttaattctttaaaccatatagaggttttttttt
s HiC_scaffold_1 131830639 1695 + 233722169 TCTGCTTACTGAGTATCCTTTGAA-----------------GTAATTCACTAAGT--ATAAACTTGTTTTTCTTACCTTTCTCTCATACTTTATGTCATCTGCAGGGTGATAAAGGGCAAACAGGACCCGCAGGAGAAACTGGAAGCAGAGGTGCTCCTGGACAAATTGGGGAAAGCGGTCCTAAGGGTGCCAGAGGCACTAGAGGTGCTGTGGTCAGTATTTGATTTGTTTCTAGAATTGAGCCATGGTGGTTAGAAAGGAAATATATCCATGACCTTAAAGCTTCATCCCTTGATTAACTTTACAGAGAAGGCAATAGTTCCATTGAAAATAATCTATCTGCATGGGATGTGAAGAATTGTAAGCATTCCACAGTATTTAAATGGCTTAGTGGTTTCTGGATGtgaaaaaaggaaaggggaaaaacactgaaaatggaaataaaatatgaaatg-agattttaaaaaatcagattgtaATTCCTAACCTAAGTAGGAAAGTTTATATGCCTTGCACTTAAAATCAGGATTTCATATCTTCTAAAATACGTTGCTATGGTTGACAAATTGATTTGAAAATTAGGTTTACGTGAAAGGAACTTTCTGTCTATGCTTGGATTCCCTATGCTTTATCTGGAGATTCTTTTTCTAATCACT--------GTTATAACATTGTATA----------ATTTCTTGCATGAACTTTGCATGATATTGGAAAC--AAGTGTAATAC-GATATATCTGCAATAGCAAAATTGTATTGCTGTTACATTTGGACCTGTCCAGAAAGTGACGGCAtgaaaaagatgtaaaatatttaaaaggttgTCCAATTTAGTCCTCCGACTGTTTCATAAACATCATTACAAAATGCAGATATGTT-TTCTCACCTCCATTTAAATGTCACAATGTGAGACTTTTTACCAAGACCTTTGAGAGACCATTGCATAATACATTTTTTTGTCTGAGTAAGATTTGCC-----------------------TGAGGC------TCATTTTA---------------------------------------------------------------------------------------------------------CACATTCCATTGCTTACTGACCTTTTAGTACTTTAGCCTTCCttacttccttttatttc-----------------------------acttac------------------------------------------------------------------------------------------------------------taataTTTATCTGTCTTTGGCCTACATGTTCAAAAATATTACATAAGATGATTAATGTTAGTAAACATAAAAAGCAGTATATTTAAAGAATATTGATTTCAAAGTAG---TCAACTATGAATTTTTTGctataa------------------------aattatatacttt---------ttCAATTTTGACACCTGTTCCC----------------------------------GAATTGCTTCCAAG--------------------TGGGTTC-------------ACCAAATTTATGT--------------------------------------------------------TCCTGCCATCCACATTTTATACTAATACATTTGGTGTTTGCTGATCTGATGA--------AAAGGTATATCTAATTTTT------CTATTTACATTCCCCTATTTACAGTTAAATAATCTGTAGTTTGGTT-----TTTTCTG----------------------TAGGAGT-------TGCctatttatttatgctttatgttt---ttgattaggtttttttccttattaatttGCAACCACTCtttatatatcttaa------atatagttttttaaatatgttgaaaaatatattatcaatg-----tttcctttctgttatctttttgttttgtttataattttctgtatagaacatttcaatttttatacaGTTAAA-CTTGCTATCTTTTCCTTTACAGTTTCT--GCTCTATTTCTTCATTATAAATGCCTTCCCTACCTAAAGTATATAAAAAAATCCTCTATATTCTAATTCTAGTACccttacagtttta-ttttaactCTTTAGGCCTTGTGGAGTTTGTTTATT

a score=33501
s chr3           145478885 1789 + 160039680 CTGAATTCTCATTTA---------AGTTGGCTTTACATGGTTCTTTCTTAAGCTGAAACATGTTTCTGTCCAAATT----TTTCAAATTTTCTAATTTATGGTTAATAGTTGTAACATGAACTTTTTAAGAAATATAGCAAAATATGCATTCTGTGTGAGATATATTGAAGCAACTTGATCAAATGTAACTCAATACACA------------------GATTCTCACACCTGCTTAGTATAATACATGGCAAATCACATACCTATTCTATGCCTTTATTTCCTTACTTCCTTTGTCTTGAGACGCAAACAGAAGAAACCACTGTGCAAACTCTTTGA----TAATATAAAAAATAAGGCATTGTTATCATCATTACATTAGCCAATTTTCAGCTGTCTGGGTGATATCTTTGATACAGT--AAGAGTGTTTGCTAATCAGTCTTTAATTTGTATAGCTTGGTCATCTGTAAAATACTGATAACAATAATCT-TATTGTGATCATGATACATGCATTTCCAGTATTTCTATTCCATCAACTTTGACCTGAATTTAAAATCATACTCCAGAAAGCATCTGGAATCACCTCTGAGAACAGAGCTGTTCTGAATCCTGGAGTCACAGTATCAAATACTATCAGGTTCCACTTTCTGATATTCAGTGAG----------CACAAACTTTGACAGTCAAAACCTGCATTTCTAAGAGCTATTTAGGGGCCAGCAGTATTCTAATAAGTGAATGTGGTTTTATTATTATTATTATTGAGTATGGATATACCAGAAATGAACTAGTAACATGGTTTGTGGGACTTTTTGGTCTTGGAGAAACACGGACAAAAATTGGGGGTGTCATTTTTCTGTTTTCCTGATTTA--CTGGGTAGAATTTCAAACCATGAAAATCTAAAGGTAAAGGTTTGAATAATAGGCGTAGATGTTTAATGATTCACACAATTGTCTATTTTCTCT------AATATTTATTTTGATTTTTTAGGGTCCATTAGGATTGATGGGACCTGAAGGCGAACCAGGAATCCCAGGATACAGAGTAAACATTTCTGATTTTAAA-----------TAAATAATTATTCACAGACAGGAAGGCATTTTTAGCTCATATTATATCCCAAATATGCAAACTAAGATTCACTGTTCatttattaaaattttattataaataaCATGA-GAATGAAAAAATATGCAATGAA-------------------ATTAGACAACAAAGTCTCAATAAATGT----------------------------------------CTGTAT-------------------------AATTAATTATAATAGAAA------TTGTAGAGCTTCATA---------------------TATATCCACCACCA-AAAAGATAAAGTTC-----------------TAATAAACTTGAGAAAATAAAG-----TAAAATAAACACTGTTATTT--------------AAAAATGTTTCTTT------TCCTTGA----TAAAGTATT-ATGATATTTT-------------GGTTCTCAACCTTCTGTAAAGTGTGTCTTGTATTTCTTCTCAGAAAACTGCAATGAGTAACAGCACGGGGACGGTA-GCAACAGCTAGCACATCTGCTTGGTCTGGGGACTTG----CTCTTTACTTGTTGCTATTCTTATAGGGTCATCAAGGTCAACCAGGACCCTCTGGATTGCCAGGACCTAAAGGAGAAAAGgtgggtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCGGCCTTTTACTTCCAAAGTTATGTA-TGAAACCTATGATTTCTTTCTAAATGAATGCATGAAAATACTGTTAAGAGATAGAAGGGCCACTTTTCAAGTTAGAAAATTTGCAGATTCTAGGAGGATATAAATACCAAGGAACTAAAACTCaaaaatattaaatatattaaatattttCCATGGATTAATTGGAGATTAAGGTGAAACAGTATATGT
s HiC_scaffold_1 131834807 1900 + 233722169 CTGAattcttgttaattttttaaaaattactgttatGAAGTTCTTTTTTCAGTTTGAA---GCCTTAAAGCAGATGATTACTTTAAATTTACTAATTAATGATCAATAATTGCTGTAT---CTCTTACAGAACTG---------------------------AGACTCTAGTGGtattatcaaataaaa---aatacacatgcAGGATCCAGAGACTTGGTTCTGGTACCTAACTACTGTGATATTATGCAAGTCACAAATATATTCTGTGCCTTCATTTCCTATATCCTGCTTGTTTGAAACA-GAACAGTTGA------TGTGgaacattttaaaacagtaataCAAAAACGTAGAAGTT-TTACAATcattatttttgctcattttaactTACTT------CATCTTTTGCATAGTTTAGGGAGATTTcctgaataat-tttaatttatgtgttTCCCatacctttattatattgataaTGAGAAATTATAGGGTGATCATCACACACAaagttttaatatttctgttttaacaacTTTGCCCTGAATT-AAAACCATATTAATCATAGCATCTGGAATCCTCAATGGGTATGTAATTCTCCTAGATTCCATCGTGATAATATCAAAACCTCTCAGACTTCACTTTTTAATACTTAGTGACATATATCTACCATAAGCTATGA-----AAGAACTAGATTTTCAAGAATTTTCTAGCAACCAGTAGTATTCTGACAACTGAAAATACTTCTTTTAATATAATTA---AGAGTGTTTATACTAGAAGTAAACCATAGAC-TTTTATGTGGAACTTCTGTggttcagaagaaaataaagacaaagttgggatattatttttttattttcccatttcaaactaggcaaaattttaaatcatgaatCCTTAaaggtgaaaatttaaa-aacaga--tatatatttaataatgtaaacaatctcctgttttctttctcattaacatttaatttatttttttagggtCCTTTAGGATTAATGGGGCCTGATGGAGAGCAAGGAATTCCAGGATATACGGTaaacatttctaatttttaaatatttatatttacacatgtatatacacacatgaaa-CATCTGTATTAAAGATAATATTCCAACTGTGAAACCTGAGATTAAATCTTC--CTGATAAAATTTTATGAGCATCTTTATgaagtatgataaaaaatacagtgactgttGCTGCTGAGTGCTCTAACAGAAAGGCAGGTCTGTGGAAACATTGCAGGGTGTCCTCACCCACTTTCTTCACCAGATTTGGCACTGTGTCACTTTCGACTATTCCTTAAAGTCAAACTGACCAAGAGAGGAAAACATCTTggattgattcaggacatcaaaacaatcatgacagtgcaactaaaaCCATAAAAGAGAACATTCAGAACTACTATAGAAAGTCACAAGACTGataggataaatgtgtttgaagccaagaatatgattttgaagaaaattaatgacaatgtgtctttaataaatttttaaaaattgaaatattcactgtatttttataagTCTCTGTAATTTTTACCCCACTATGGAGTGAATTCTCTTTGTCCT-TCAGAATagcaaaatatgtaaaactatAGGCTGGATGTGTTACGGGAAACGTGT-------ATCAGTGAAATTAGAGACTCTCTACTTGTTTGTATT-TTATAGGGCCATCAGGGTCAACAAGGACTCTCAGGGTTGCCAGGACCTAAAGGAGAAAAG------------------------------------------------GTATGCActgacattttaggtttaaatttAGGCATTGAATTTTATGACT--TTACTGAAAGAATGCATGGAAATATCTTCAAGGGATAAATATACCACTTTTTAAATTGGAAATTTTGCAAATTCTAGAAGAACACAAATACCGAAGagctaaaattt-aaattatta--------aaatatcttctgTTGGTTTTTCCAATACTGAGGTAAAACAATGTAtgt

a score=12619
s chr3           145485803 476 + 160039680 CTGGAGATCCTTAGTGTTGTGACATCTATAAAGACTTCTTCTCCAAGTAATATCACATTTATAGGCTTTGAAGGTCA-TGCACG-----TCTTAA----TCACCATTCAATCCTCTGCATGAATT-----AATATTTAAAAATA-----TGATATTTGTCCAGCATAACACACCAGATTCAGCAAAATATTCCTCAACTAATATTTTCTATTCTGTTTTTAAAGAAGACTGTA------------TTTAAATTAAGTTCTAGAATACTCTGCTTCCATTTTAGCTGATAACA-------CTGTAGGCCACATGACTAGACTTCCTTGAATTAATGTAATCCTTTCTATTCCCAGGGCCATATGGGTGTGCCAGGACTCAGGGGTGCCACTGGACAGCAAGGACCCCCAGTATGTTGTGAAAGTAT--TCTGTAATTCTGA-ATTTAAAGAAAATCCCATTAACATAGTTCATTTCTTGTCTGCCTTACATGATATTTCTCTCTTGGCTCCTATTAAAG
s HiC_scaffold_1 131841657 494 + 233722169 CTTGAGATCCTTAGTTGAATAATATCTACAAAGAttctttttccaaataaagtcacattcaCAGGTTCTGAGAATAAATACACAGACATTCTTAGGAGGCTACCATTCAGCCAACTATATTGATtgtcataagaaataaaaataaaattggatacTTGTTCATTATAATAGTTTGCAGTCATCGTAATAT-------CTAATGG---ATGTCTCATTTCTGAGAAAAATCATAATCTCTATAATGTTTAAATGAGTTTTCC--ACACTCTGTTACCAATTTAAGTCATAGTATAGTATTCTCTAAATTACATG---------TCtctatttattgtaattttttttattcctaGGGTCATGTGGGCATTCCAGGATTAAAAGGTGCTACTGGACAGCAAGGACCTCCAGTATGTTTTGAAAGCATTATCTCTCAtcttaatatttataaatgttaatattaatatgatttatt--ttatctgttttacGTG-TGCTTTTGTTTTGACTCCTATAAAGG

a score=18870
s chr3           145490074 742 + 160039680 ACCACCAAGCTCAGCTAACCAGTTAGACTTTCTGTCTCTTACAGGAGAGATCATTTTCTTCTGTGAT-GCACATGCTCTATATTCCAAACGTTTAAGCCCATCTTCCAAGATGTAACATCTGAGATTGATtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgagtgtgCACACCATATCTTTAGCATGATTGTACTAAGAACTTACCATCCCAGTGTAAAACAGTCCTGGCCAGGGTAACTTCAGATGTTCTCTAAGGAGTATGCCTGATAATGACAATACAATACAATTCTTTCCCTTATTTGTACACCAGGTTACTGTGTTCAATGTTTTTCATCTGAAAATAATTTGGGCATATCATCAGAACAATGGAATGATTTGCAAGGACAGAGTCTCTAAACTACCCTGGCAGACCAGCTGCTGTTGAATCAATTATGACTAAAAACATCTCACACATGGAAAAACAAACAGCTCCTTGGGAAAT-AATACCCATTTTT-TATGCGAAAGTGTATTCTTTGTGCTTCCATGGAAGCACATTTTGGGCTCTTGGTTCACATCCATCACCACACA---GTGTCTTGTGACCAGGAACTTGGCCTTTGAATTCCTAGCATGTAACAGATGCCACGATACATGATATTCAATAAAACTCTATTGAGTTTAGAATTTAGCCACTTCCAAAAGGAGGCACAGGCCCTGT-----CTGAAAGTGAGGCCATTTTCAAAA
s HiC_scaffold_1 131847083 665 + 233722169 ATCATCAAACTCTTTAAAAAAGTT-GAATTTGTATCTTTTGAGGAACATGTTCTTTTTTCCTGTGATTGCATAtactatattttctaaa-----aagcttaaattc------ataacatctaaaatttttcttttctttgaatct---------------------------tGTTAAGTTT-----TGGACACAGTTTGTCCTTAAT-TTATGATACTG--------------CAG-GTAGAATTATCATGTTTATAAGTAGTTTTGATGATTTCTGAGAAATGTGTCCAATAATGATgctat----------ctttttttatttgtgtaccaGGTcactcttcttatttttcttc--ttaaaaataactttagGATATCATCAGAACAATGGCATGATTTGTAAGGGAAAAGTTCCTAA-CTATCGTGGCAGACCAGTTGCTGCTAAATCAATTATGACTTAAAACATCACACACATGGAAAAACAAACAGTTCCTTCAGAAATAAATATCTCTTCCTAGATTTGCAATTATGCTTTTTGGGCTTCCAGAAAAGCACATTTTAGGTCCTCAGTTCATGCCCATTACCTTATATATGAGCCTTGTAAGCAAGAACTTTGCCTTCAGATTCTTAACACAAACCAGA-------ATATATTATATTCTATAAATATCC------TTTCAAA--TAGTTActttcaaaaggaaacaaagtggCTGTTACTCCAGAAGGAGTGATTATTGTAAAGA

a score=60969
s chr3           145490692 2838 + 160039680 TGAATTCCTAGCATGTAACAGATGCCACGATACATGATATTCAATAAAACTCTATTGAG---------TTTAGAATTTAGCCACTTCCAAAAGGAGGCACAGGCCCTGTCTGAAAGTGAGGCCATTTTCA------AAACAGTGCTGTTTTAGAATTATGATTGAATTTT-TAAGTCATAGAATTTGGAGCAAAGGGGAATTTCATACTCGATCTGTTCAATTTCTCCCATTTTCCATGAGGACGC-----GACCCCCACACAAACAACTCCTGTGAGGTTTAAATGGCCATCCCAGTGACACACAGCTAGTTTT---GTGCACTT-TTGTGCTATTCTAGGCTCGGTGTTTAAGTAAGTGTATTTCTATCTATTAACGCCTGTGCTTCCCATTTTCAGGGTCCTCAGGGGAAAAGGGGAGTTCCTGGTCCTTCTGGGAAGCCAGGCATTCCCGTAAGTAACAGACCTCTTTTATCTTCCTTGTTTTTCTAAACAGAATTGACAACTTTAGCAAGCAGAATAGTTTGGGGCCAGTTATGTCATGTTGGATAAATCAGACTGCCTTGA---AAAAAACTTCAAACCCATGCTGGAACACAGAGGGACCAAAATATGACCATTGACTCTAAACCAAATTTGCTGTTTAAATCTAAGTCCCTGAAAGTGAAGGATGCTATTTCCCCGAGTTACGGAGCCCTCCCTGTGGACTCTTACTTCTCCCTCTTGGTGAACCACTGTAAA-CAGGGAACTTGGAAACATGACCAAGCAAGTGGTAACAAAGGTCAGAG-TCTTCAAGTATAATTAAAAAGACATGAGATGAGCTGGCTTTTAATTGGAGGGCTCAGCTTCTCATTCTCCTGGCAATTAGAGCAGAAAGTCTTAGG------GGTGGGTAGAACAAGTCCTTTGTCCTAGAATAAAGGTTAATTTTACCTTAGCATCTGTATCCTCCTCTAACTGGGTAGTTATGTGCT-----GAC---TGGCGAATTAAAAAGACACCACTTCTGATGCCACCTGCTTCTTCTTGCCTGCACTGGGGCAAAAGAGGAGGAA----AGGATCATTCATACAGAACA-CCCTACAGATAAAGCCCAATTGTTCAAGAGTAGAAA-CAAGATAGTCAGGCCTTTTGTTAGTCATGT--TTATTTGACTCAAA-----ATGGGGGAAAGCATCATATTCTTTAGTCTTAAGTAAAAACAAAAACAAAACATGATACAAGGATTTACAGA-----AAACACTGGTACCTCCAGCTGATAGCTCC---AGCTGATGCCTCTAGCTCACAGCTCCATCTCACATCTATTCTTGACCTAGAGAAAGATG-GACTGCCACAGTGACAAATATCAGGAATCTCACTGTGGCTTGAGAAGTTC---CACAATAAATTACTGACTCAGTTTTATTTTTCTTTAGGGGACAttttcttaggtacttggactgaaacca---------------gggcctactggatactaatcaaatgttcttctacacagttatagccttagATCTTAAGGCAGAATATAGGAATATATAGCTTTTACTATACCAAGAAATGTCATCTGCCCAATATGTGTCTATAATTAAAATTACTTTTTATTATCAAGGGAGTTCCAGGCTTTCCTGGGCCAAAAGGCTTACAAGGATACCCTGGAGTCGACGGCATGTCAGGATACCCTGGGAAGCCTGGTCTACCAGGAAAACAAGGACTTTTGGTGAGTAGTGAACATGTAT-TGTGCCCCTTACTTC---CGCATAGGTGTCTTTTTAA-GGACCATGGGGACTCTGGTTATGTCATAGCTAGG---GTATTAGCTCAAATTAAGCTAATCATTTTTCTAATAGTTATCTTGGAATTGGACTAATGATTCCAAGTATGTCAGT-AGGTATAGACTCTTGGATATTTTATAG-TAGCAATTTATATTTTCTGTA--------CATGTAAAAGTTTAAAAAAGCAAGCGAAGTATAAGGAAGCTCA--CTGAGTGACTCCGTGAGCAggccgtg--tttgtattcaccaaatgtctgccgccatctttggaatatttcggtcttggcggtacctcaag-taggttctgcccagagtaaatttccctttgcttttacagccctaggtattttcaagaactgtgtggatatttcc---tgcattcgtttaAGGGTGATACAATGATAGAAAATCATTCTTGTCTTTAATGTGAATT--TCTAGCTTATTTGATCAGAAAGTTTAGAATTGTctatttttagagaattactctgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgatcagaagagggcatcagatcctctggaactaaagttatgggaggctattagctgcctactatgactggtgggaagtgaaccccggtccagtaagcacccttaactcctgagccatctctccaatccTCCAAACTCTATTTCTGTCTTCACTCATAGTTGTGTGAAGGCTTTTATCAGTGCCAACCTAATTCAGATACATAGGGAAACATTAGAATAGCTATCTTCTTTCAATCCCCCAGTAAAACTGACCTTTTAAAGTTCCCACTATTTGGATATGGTTATTCGTTGACTTGTTTCTCTTTTCTTAAGTAATAAATCAACCCTCGTTGTTTATTCAAATGTGGCAAGGTGACGTACACAGACCCAAGCTCACACCGAGGCTCTTCTTTCACTATGGTGAGGTACCTCATATATTTCGAAACAAAAA----GAAACTAAAACA--ATCATTTATCCAATCTAAGTAATTTC--------------------------------------AGGTTTCTA------------------TTTAA---------------TTTTGGAGGAAATA--------TATCAGAACATCAGGTTAAGGCCTAGACAGGTGTGACACCTGGGGTGAA-TATTTAATTGAAACAAATATTTTATAGACTTCTGACAGCAGTATCTATCTAGTTAAAGA
s HiC_scaffold_1 131848439 2623 + 233722169 tgaatatctaaaatgtaacaaa----------aatgttattttaaaataataagttaagatcctttttttaaaaatttaactg-----aaaa--------agGCTCTGCCCAATAACT-GGTCACATTCATTAAATAAGTAGTTCTCTTTTATAAGTATGATTTAAGGTTGTAAATCATAGAATTTGGAACTGGAAGAAAGTTCCTAAGAGATCTGATCAAAATCTCCTACTTTC-AGGTGAAAGCAGTATGACTCCCTCAGAAA--------GTGA------AATGACAATCTCAGTGATACAGAACTAGTTAGTGAGAGTACTTACTGTAGCATTCT--GTTCTGTGA----------------CTGTCAAATGACACGTGTGCTTCCCATTTTCAGGGCcctaaggggaaaaaaggagcTCCTGGTCTTTCTGGGAAACCTGGCATTCCTGTAAGTAAAAAGTctctttcatctttct-gtttttctaaataGAATTGACAACTTCAGCAAGCAGAAAAGTTTAGATCCAATTATGTCATGTTGGATAAATCAGAAtgtcttgggggaaaaaaatttaaacccaTGCTGGAACACAGTGAGAACAAAATATGATCACTAAGTCAAAATGAAACTTGTGGTTTAAATACAAGTCCCTGCACCTAA--GATGGTATTTTCCTCTGTTATGGAGCCCTCTCTGTGGACA--TGCTCTTCTCTCATGGTGAACCACTGGAAAATAGGGAATTTGAAATCATAAT-AAATGAATTGTAACAAAGGTCAAAGATCTTCAGGCATGATTTAAAA------ACATGAGCTGGATTTTAATTGGAGGACTAAGCTTCTC---CTCCTAGCAAATAGGATAGAAAGTCTTTGAACATTTGTTTTTTAGAA--AGTC--TTATCACAAAACAAAGTTTATCTTTACcttagcctcagtttcctcctctagCAAAGCATTCATGTATTTCATTAACCTTTGGTGGTTTAAAAAA-----------------------------------GAACTAGGGCAAATAGAGATAAACTGTGAGCACATTCAGATTAAAGATCCCTACAAATAGAACCCAGCTctccaaaagcaaaaaataaaatattcaaaactttCTTCAGTCACGTGATTATCTGTTTCAAAGGGCAATAAAAGAGAGC--CATGATTTGT-TTCTTGGGCAAATA----------ATTCAATACAAAATTTTGTGGATGGTAAATGATTGTCATCTGCAGATGAAAGCATCCTAAACTGACAAGT---GCATACAGCTG--------ATCTCTCTCTGATGACTGGCAAGATGAGAATACTATAG--AATTATACTAAGGATCATGTTGTTACTCAA-AAGTTCAGTCACAGTAGATTGCTGATT--ATCTTGGTCATTATTAAGAGAACTTTTTAAGGCTATCTCTGTTGCATCCAAAAAACAAATTATTAGGGAatg-taaaaaatggtaaaaaaaatttGACCAGAAATGTAAACTTacctttc---tttcaata----aatataaagcTATTTCT-CACTTAAA-----CATCTGTTCAGCATCTAT-TATAACACAAGTAATTTTCAATTATCAAGGGACTTCCAGGCCTTCCTGGGCCAAAAGGCAAACAAGGATATCATGGAGCTGATGGCATTTCAGGAAATCCTGGAAACGCTGGGCTACCGGGAAAACAGGGATTTCCTGTGAGTAGTGTAAATATCTCCTTGTTCTTTATTTCTTACACATCAGTGTCTCCTTGCTAGATTATAGATATTTTGGCTC--TCTTTCCTAGGTTAGCATTGGGCCAGATTAGGCCaatcttttcttttatagttATTTTAGAATTATATTAAGGTTTCCAGGGATATCAATGGGGCATATTCTCTTGGAAATTTTAAATCTAATACTTCATAGTATTAATAGTTTATAGCATATAAAAGTTT-----TTTGAGagaactgaaaagaaattaaattttagggGCTGTATAACCTGACTATACTCTTGAGTTCATCAAATGTCTTTAGTCACCTTTGGAATATTTAGGTCTTGGCAATAACTCCAGAAAGGTTCTGccaaaattcatttttcctttacttttataGCTCCA-GTATTTATAAGAACCTTGTgaatgtttttctgtgttttcatctAGGATTGGTACAATAATA---------TACTCtgttttatacaaatttattttctttatgtgatcagaaattt--gaatttttaattttcatatagttA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTTCTTCTCTAACAG------------------------CAACCTAATGCAGATATTTTTGTTATC-CAAAATtaaatatgtacttttaaaaactcagtaaaaTTTACCCTTTCATATTTCTATTATATGAATGTGATTATctattgatatatttttcttttcttaaataataaatcaattcTAGTTGTTTATTTCAATTTAGCATGGTTGTGTGCCTAAACTCAAATCCAAA--------------TTACTATGATGGATTATTTCATctgtttaaaaacaacaaatacaaagcTATAAGATTATGACCTAAATAA-CTTAGCAATTTCACACATAAAGATCTAGTCAGATCTTTGAAGAGGAATGAATGtttctatgaatatttttatgatattttaacatgatttctattctttttgaaataagtaCATTAAAGCATCAAAGCATCAGGTTGATGCCCAGATAA--AAGATAATTACGctaaagtttttaattaaaatatctacTTTATAAACTTCTGCCACTGATATCTGTCTGGCTGAAGA

a score=53800
s chr3           145497722 1878 + 160039680 TAGCATCCTTTTACAGACCCTGCACTGTAATCCCAAGATTTGCACA-TCAGTGGGTATTTATGAAGATGGAAAAGTTTTCTGTAAATACCTCTGCTCTCCACAGAATATTTTATACATGTTATTCAGTTTATAGTGCCTTTTCAAAGAATACACTAAATAAACTAATATCTTCAGTGGCTACCTGGTCATTAGCACAAGTAATGTCTAAGAGAGTAGTTTCTAAGGCAAAGGTAAAGCTACTAAGTTTTTTTTAATGCTATTGGAGGAAATA-------TAAT--CATTGCTAAAAGCAAGGAAGATTCCTGAAGTATTTTCAACCAGGGATAAGTACATCTTTCTCATTGGCCTTTTATTTAAATCATGGCACCATGGTGTTCCTTGGCTTCCCTTTAAAGACTTCTGGGTTTATCCACTTAGAAAAATATTTATTCTAGGGTTTGTAGCATTATGCAACTGCCTAGTTTTTCTAAACAATGTTCTTTCTTTCTTTTCTTTTCTTTTTTGCCCCTTTTTAGTTTTGATGTGGTCACAGAATTACAGAATTCCTGGCATATTATCTCTGTAGTCTCGG-TGTTTTT-CAAGGTCATGTGACCATAGCTTAGGGACAGTTTCAGAGAAGCTCAAGTTGCCTTTGTGAATTTCCTT-TGCTCAAATGAGTGTTCCAAGGCCAGACAGCTTAGCACATCTGTAGCAAATGACTCTACCACGCTGTTTTCATTGAGTCGGACTTCTGTACAAACACAGTCCCTCAATCATTTAG---GAAAAAAAAC--CTTTTCCTTGACAAAATCATAAATCTATCTGTCATTAAAACGAAGACTTACCAGCCTTTTTTTTTTTATTTTTATTGCTACTCTAATAAAACTGATTTTTGAAAAGGAAGGAATGAGATGTAACTAACAACTTATTTTAGGACAAATCGAGGCTCTTCCAGGCCTGATTTTTACCATTCATCAGGTGACTCTGTGTTTAATGTGCATTTATCAAACTGAGGTTCTTGTTTTGAAAGATCACTGAGAACCTTGAAtctttctttctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcATGGGTTGTGCCCAGCACCGGATAA-AAGGGAAAGTGGCCCTCAGTAGCCTATCCCTGA----------------------CCACCATGGCAGTCTGAGTTAGGAGCACTGGCAGCCCAGTTGCCCATCTGGTC-CCGTG-----TAACTTACAACACAGCTATACTC--AAAACCTCTGGTTCTGAAGAGGCTGCAATCCTTTCATTTAAGCATGCTG------TCTTATTGCTGTGGATAGATCTACTTTCAAAGAGTCCTGTCAACTCTGCGTCACGAAGAGCTTGCTTATCCAGTTAGGGCTCCATCTCATTAGAGCTTTCTCCCTCCTTTCCTGTGGCTGCTTCCGTTGGACAGATTCCTGCTCGTTAGGATATCTTCCAGGACAG----CGCTTGGATTGTTGGGCAGCTCATTAGTCTCAAAGTGAAAGATCTATGGAAGGATAGAGGTTTCCTCATTGAATCTTCAGTGAACCCCACCCCATCAGATAGAGCTCATACTCTGCAGAATGGTGGTGTTTCTGTATCTGGCCTCTGTCAGCCTGACAGTCTACCCTGTTCTTCATGAGTACTGTTCATTCAAG-CATAGTAACATCTAAGTTATC-aatgtttactgc-----gtaccagacactaacccagacacttattatatattaag---ttatttaatctctatgaggtcaacatagctattaccttcagtttaccaggaggaagg--ggtactcagagagactaagaact----ccaagatcacacagtcaacaagcacgggaaccagaattcaaaaccgggcagtctagtgtgagcaccttgttctttacaaggatg
s HiC_scaffold_1 131856335 1780 + 233722169 TAACATTCCCTTGAGGAATCCCATTTGTAACCTCAAAGTTTTTATAAGCTActggtatttataaatatggaaatattttctataaatgcCTCTGCTCTTTGTAGAATATTTTGT-TATGAACTTAGAATTATAATGC-TTTGCAAAGAATTTTTCCAAGGAAATGCTGTTT-----GGCTAACTCATATTTAGGGGTGGTAATTTCTaacacaatgatttct----------taaaccTACTA------------TGCTACCagaaaaaatacttaatataATGTTGTCTCTAAATACTAGCAAgttttctagaatattttaaacaaagcATAACAATATCTTTCT-ATTGGTCTTTT--TTAAAT---GGCATCATGGTGTTTCTTGGCTTACCTTTAAAGACTGTTGGATTTATccactgagaaaaatatttattctgggATTTGTAGCATTATGCAACTGCCTGACTTTCctaaacaatgttttttttttt------------------ccttttttaaa---aatgtggccaAGGAATTAAAGAATTCCTGGCATATTCACTCTGCTGTTACAAATGTTTTTTCAAGGTCATGTGACTCTAACTGATGAACAGTATTGGGGAGGCTCAAATTGCTTTTGTGAATGTCCTTCTGTACAAATGAGTGTTCTGAGGCCAGTCAACTTAGCACATCTGTAGTAAATGAGTCTACCATACTGTTTTCATTGAGTTCGACTTCTGTACAAACATAATACCTCAATCATTTAGagagaaggaaaacaacttttccTTGTAAAAATCATAAATCCATTTGTCACCAAAACTAAGACTTACTAGTC----------TATGTTTATTGC--------TAAAACTGGTTattataaaggaagaaatgaaacaaaactaacaaCTTGATTTAGAGTAAATCAAGGTCTTTT--AGTATGGACTTTGCAGTTTGTTAGGTGAATACAGGCCTAA---ACATCTTCTAATGAGAGATTCTCATCTTAAAGGAATAGTGAAAATCTTGAGTTTCCCATTTC----------------------------------------------------------------TAGATAGTTCCCAGTACTGCATAAGGAGTAAAAACATACTTCATCAGCCCA--CTTGAAGCCAAGCATGGAACAGTGAGGCCACCATGGAAGCCTCTACTGGGAAAACTAGCAGGCCTGGCACCTGCCTGGGCTCTGTGTTCTCTAATCTGAGAGCTAGTTACACTCAGAAAacttctgtttcaaaaaaagatatGTTTCTTTCTTCACAGTATTTTGGACAAATATACCTGCATTGACCaaacctttatttaaaaaaccCTGTCAACTCTTCATTCCTAAGACATTGATT-TCAAATTATGGCTCATTCTCATTACCACTTTACCCCCTCTTTC------------TCCTTGGTCCATTTTCTGCTCAGTAGGACCTCTTCCAGAGCAGATGAAATCCAGTCTATTTTGTTGCTTAttatcaacaaaatgaaatattggtGAAAGGATATA-ATTTTCTAGTTCAATCTTCAATAG---TGTCCCTATCAGATAAAGTCAATATTCT------TTGTGTTGCTTTACAATCCATATTT--TTAGACTCATGTGTAACCTTGCTCTTCATGAGTGCTATGCATTTAAGTCATAATAACAACTAAGTTATTAAATACCTACTTCCACAAGTATCGAGCACTATTTCAGGTGAAGAGTATTTTTTTAACCCTCACAAAACCTCTACGAAGTAGATAAA---ATTATCTttagttcatagaaaaggaaGCTGAGACTCAGCAAAACTGAGTAATTTACCCAAGATCATACAGACAACACATGATGGAACTAGTGTTCAAACTCAGGCAATCTAGTTTCAGAGCCCTATTTATAATCAGTATG

a score=51496
s chr3           145499841 3834 + 160039680 [encoded data, 4096 characters]
s HiC_scaffold_1 131860696 3534 + 233722169 [encoded data, 4096 characters]

a score=54532
s chr3           145504508 3409 + 160039680 AGACAAAGAACATATTTATGTGCATATTCCTTAGAGG-----------TATCTTCCTTACAATAGTTGATATTTTGAAAATCCTTGT-TGGATGCATGAGAGAACCATTGGATAACATGAATAAGTATCCTGGGAACACACTCAAACAGTAgcaagccctttctaagggagaatttagcagattt----------------------------------agtaagaaccagtagaaaata-------agggaact-----------gagagttttgcttaggaatttgtgtggcaaa------atgacataagtg--------tcacataa-ttctattcattaattaagttgacacataacaattgaatacaatttttgtaataagatctacttgtaagaaaaatggagaaagcacaatccttttggacagacagtgtttagctcacttcagttccctattgacattttgtacttttttttatgtgtttgctcatctgttaa-actgccctgtgttgggattctgcatatttcacatattccatctttgtacgttctttacacagagataggaacttccaagt-ccacaattt-atgagcatatgatcttaattgaacatagtcagtgcgtggaaggaatttgtagaattccattagattgttcccttgatatttgtcttgtaccatgccattacattgtagactaatcatttccaattgaaggttatgtggaaattcctcaactgta----caaatagactgagaaaaacagaatcctcttccaccc------aaaatatgcacctgaaactgggatcaggaag-tctgacaagctttgacgtctgtccagcagctctttgtctgtttgtcttaatttttgacagtacaggaaagtatgcggctcctactgttgcatgggacttggttttgaagta-------actacagcgtgtgttacacataaagtcactgctcacctgtgttacttcgagtttcattaactaataagcattgtgaagtctacagcaatatctaattgttttgtttttgttttgctttgttttgttttgctttgctttgcttccttttgttttttgagataggggtcttatgtatcctaaggctaacctcaaatgcactttgtcatcaaggattaccttaaacccccagtcttctgccacctcctgagtactggatcctaggtgccgccgctgagctttgtcccacgtaatttctgtctttagatgactttctttactttggaaagatttcagatagaactacaacttatttactgtccttttgtattgagggatgtttctttcattt----aggagagtttttgtcttgtctcaaaatccttcaactctgctgtacttagtcccaagccactgaatat-tgcataactggacaaggcaagatatcccatccctcattttttgattaaaaacgttatagaaccaaaggagattaactccacaaaagccaatggaattcactgttgacacacaagttggataacctatatgttatattcaaatagttacctcaggttccctgacaacaaataatgcaatgaatatttatagctttaaacatca-gaattttcccaagctttgacgtttgtccagcagctctttgtctgtttgtctgtcacagctgtcagctctgtcagctctcagaaggttcctcttcaggttgtgctaatctggttcttgctaacttccctgacagtagtcttccttgcagccaccc-acagcctatggctaactactccatcatctcaaactcagcattgactcttagaatgagcaacttatcaatactacaaacttcggttggcttaccaagagc--aagaaaaccactttaaaaccattttctatagcctcgaactgttgattctatcaa----aatgtc---aacatttctaacaat-attcttaccaaaaggctaaacaaacttgaacaagttt-tttgctacatgatagaattcagtcatcagaaacaaggttaattctttactgggctgaaaaatgaaagccttattttatttcatccttctttaaaagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcttctatgataggacattccttttttaaatttttctaatttcctatctgttgcattcacgtaaagttgaaatat--------gtccttggtctgatattgtggcatgaatgtagttttagtgatagatgtggtttcagtacataataaatacaagagtttgtcatttaatttgctaaaaaaaaaatccacattctgctgcatctataaatcatgacattcaacgttcacctttcttatt--ttgacgtcgtatatatgttccaataataaagacaagaaataaatatttacaggaagatcatgtatgtcccatttgaaactctgcctcgctccaacctgct-----------tttagcaaacag----------aaaaagtgccacca-------tctctgccatggctccccagctctgccactgc--------ccaagtgaagccaggaccaatacattaaggcatgagtgtggctgggtctcaataaaactttattcatatttactaaaactttaatctcatatacccttcacattt--taaattattgttattcttttgattttcct-ataattaaatgtaaaaactatggtcat------gttataatctatacaacaagagctaaatgcctgcatttggcttgacagacatagatggccaaccTTGATTCAGGATTTGGTTTTATGTATTTAGTATTTGCCTGTTTA---TCATTTTCATACTATTTTTACTGGATTTTCTAGAAT--TGTGCAATTGAGAAATAGAGAATTCTTTGTGATGAGACAGATGTTCTTCTGT---AAGAGTTGCT-GGGCACAGCAAAGTACGCATCCTTAAATTAAAACAGGTCAAAGCATACAGCACAGCCTGCTT------------ATGTAAATCAAGAGG--------AACTTGGTGTTGCTTTATAGTCTCTGTTTTAAAAGCCTAAGGTCTT---ATTAACTATAATTAGATATTTCATGTGAGTAATGAGTCTTCCAAACTCTTCCTTATTGTTTCGCTCCTGAGGGAAAGCATAACTCTCAAACCTGGGCATTACGTCACCAGCAGCCTCTGGAAACACACTCCTTTCTATGGGCATTACGTCACCAGCAGCCTCTGGAAACACACTCCTTTCTATATCTATTAAGCCTCTATGCTGGCTTTCTCCAAATGTGCTAGTTTTCATTCCTTGTCTGT--TATTTAGGGTGTCCCGGGCAGCCCAGGGAGAACAGGAGTGGCTGGATCCCCAGGTCCTCAAGGAGGAAAAGGCGCATCAGGCcctccaggaagccctggtgctccaggcccaaaggtac--------ttccccctgtgtgtcagg--accctgtgtat-----------actGACTATGTCACAG----CTGAGTCT----GTCTTC------ATCTGGCTAATAGTAAAACCACATTAGGAAAAAGGA-ACGTATATGGCCTACATGTCTCTGTTTCCTGTGGTAGCTACTAGTCATGTAACTGGTGGGA
s HiC_scaffold_1 131865017 3121 + 233722169 AAACAAGAGccatatttatatttgtgtttatcaGAGGACTTCCTATGGTATCATCTTTAGAATATGTCACAATCAATAAATCTTTGTCTGAGTGCATGAGA--ACTATTACATAACCTAATTCTGTATTCTAGGTATCAGCTTAGAAAGTAGCAATCATCTCCTATTAGAGAGGTCAGCAAATTCTTTTGTACATATGTAAGTATTTTAGGTTTTTAAGGGCAAGAAACAAGATCAAAGATATTACTAAGGAACTAACACAAGAAAGAAAGTTTCAGTGGTCAATCAGT-TAGCAAATGGTACATAATACGAGagaaaaattttcacaaaaactttatttataaacttaa--aaaatgtaagaa---aagccAACTTTTGTAATGA---CTGCTAATAAGAAAAGTGGA--------AATTTTTACAGG-AGATAATATTTAACTTATTATAATACCCTATTATCA------AAAGTTTTCTGTG--------CATCTGTTAATGCTGATTTGTTATTTGATT-TGAGTATTTTACATACTTCACCTTTGAAAATTCTTTTCACACAGATAGGCACTGCCACATACTACATTTTCATGAGCATGTGATTTT----GAGTATATTCATTGTTTAGAAGGAATTTACAAAATTATATTAGACTCTTCCCTTGATATTTGTGTCTTAACATGTTGTTACACTGT----CAATCATTGCCAGTTGAAAATTTGGTAGATATTCCcaaaattaaaagtcaaatggattttgaaatacagaaatttctTACATCTCTGATTAAAATACGCTTGTAAAACTGAAGCCAGAAAAATCTATCCA--TTGTAAATCTGTGTAGGAATAAAAATTTCacttatattaatttttgacAGTACAGTAAGTTA--CTGCTT-TAC-ATTACTTGTGATTTGTTGTTAAAAAATGACTTTACCACAgtatatatttcacatataaacactgttctgttttggaattttggatataatttattaataatcaTTATATAAGCTAAACCAAAACCTAACT-----------------------------------------------------------------------------------------------------------------------TTCAAAGCC---------------------------------------------------------------------------------------------------------------------------ATTCATTATTCACTTGCATTGAGAACAGTTTCTctcattccaaaaaaaaaaatctca---------aaaaaacttTAACCCTGCT------------AAACCATCAAACAGGTGTGTAACAGGACAATTCTGACTATTCTG---CTTCTATTTCTAACAAGCATTTCACACAACTAATGAAT-TTAAATCTGTAAAAGTTCATGGAATTCACTGTTAACACCCAGGCTTGGTAAC--ATGTGCTAAATTCCAGGGTTTTCCTCAGAGTACCTGA------------------ATAGTCACAGCTTTAAACAGCTTGCCTATTCACAAG------------TAGAATGACTCTTTTTCTAATC------CAAGGCTATCAATTTTATTGCCTCTTAGCAAATTCCACTTCAGGTTGAACTAATTTAGTCTTTTCT----TAActgaaaatattctcatttctAGTTACCCGACAG------GTTAATTCTTCCATCACTTCAAACTCTGCTTTGACTCTTTTAATGAACAACTGAGAATTA-GACTGTCTTCTAGTGCCTGATCTAGAATCAAAGAAAGTCACTC--AAATCATTGGTCTTGGTTTTTAATTGACTATTCTTGCTGCGCCAGTGTCTTCAACATTTCAAGCAGTTATTCTTAGCAAAAGTCTTACCAATATTAAACAAGTTTATTTCCTATGTGTTTTAATTAAGTTTCCATAAACG----TGAGACTTT-CAGGGT--AAAAGCAGAAATTTACTTTCACTGAAGCCTCATTTCAATTAT-----------------------------------TGTGAAGGAATT-CTGCTGTCATAAGATATTACATTGT-AAGTTTTTGAACTTTTCTGGCTGTCACATT-ATGTCAAGTGGGAATACTCTGTTGGGTGCTTGGTTTAACAATAC--TCtaagtgta-ttttaaaaacagctgCAGTATCACTACATAGTAAACACAAGGCTTTGTCATTTGAT--------AATGTGATCCACATTTCAT--cattccttaaaaataaca----aagtccattttcctttttctttgactTAATATGTTTGTactcataacaaa--------acaaaaggtcacagaaaa--cagtatttttcCACTAGAAACAATATCAAGTTATAACTTACTACAATTTCTTATGTACCAAACAGCAGTGCAAAGAAATGGCGGTGCCACATAAACTCTCTGCTGTAACTGTTCAGCCCTGTTATTATAGTGGAAATCAACCAAAGacagta--aatacataaa----tgatagtggcca--tttcaataaaactttgtttctgtttgctgaaattttaattttgtatatttttcacatttctttaagtattgtt---cttttgatttttctcatttagaaAGGTTGAAAAGGTTATTATATAAGGGTCATGAGCTATACAAAAACAGATAGATGAATGGATTTGCTCTAGAAACAATAGTTTACCAACCGTGGTTTAGGATTTGGTTTTAAGGATATACTATCTGCTTGCTTAACTTTATTCTCAAACTATTTTTAGTAAATCTTATAGAATCATGTGTGGTTGTGGAACAAAATATCCTTTAT----ACAGAGATATTACTCAGTTTCCAGAGTTTTTCGAATATACCAAAGTATAC----------TGAAAAAGTT---AGAATAAAGCAAAATCGAATTTGTACATAGACCATATAACTTAGAAGGTACTGTCAGACTTTGTACTGCCTCAgtgttatcatttttaaaaccCAAGATCATTATATTAATTGTAATTACAGATCTCAAGAGAGTGATGGGTGTTCGCAAAACATTTTTG--GTTTTACTCATTTGGGAAACT------------CCTGGACAGTATGTCAGTAGCAGTCTTTCAGAAAACATTTC------------------------------------------------CTACATTTGTAGAGCCTTTAGATTAATGTTCTAGAAATCTCCCAGCTTTTATTTCTTATCTGTATTATTTAGGGCATCAGAGGCAGTCCAGGAAAAACAGGACTGGCTGGATCACCAGGTCCTCGAGGATCAAAAGGTTCATCAGGCCTTCCAGGAAGCCCTGGAGCTCTAGGCCCTAAGGTACTTTAATGTTTCCTTCTGGCGGTTGAGCAATATTGTACATCCTTACTGATCACTGACTAGATAACAGGATTTTAAGattaatagcttttaataaaatttcactAATGCCAAAAACACATTAGGGAAAAAGATAAGTGTGTGACCTGTATATATCCATTTCCTGTGATAGTGATAGTGCATGTAATT--TGGGA

a score=19271
s chr3           145508584 475 + 160039680 TTAGTATATTTATAGATTCTGAGGTCCCAACCACCTTTCTTTGTCTG-GTCTGTAGGGTGAACAAGGGCTGCCTGGTCAGCCTGGAGTCCCGGGTCAAAGAGGTCATCGAGGAACACCAGGCGACCAAGGACTCCGTGGAGCGCCTGGTCTGAAAGGGCAGCCTGTATGTGTCAGCTCTGAAGTCACTACTCACTCACTCCACAAACCAGGCCACCACTGTCCAATAACGGTTGTCCTGTCTGTTTGCCTTGCAGGGGGAACATGGTGATCAAGGTTTGGCAGGTTTCCAGGGATTCCCAGGCCCCAGAGTATGTTTATATATGTTTT-----GGTAGTCTTTCACGTATCTCAAAAAAAGGGGTGTTTAAGTAATCA---ATAGTCCGTGACTTGAGCCTTTCTTT--AATCTTTAAAATTCGTGTTGGTATAC--CCATACATTTGAGTTTTGAAAAATGTTAATTTCAAAgcctgtctaattgca
s HiC_scaffold_1 131880018 473 + 233722169 ttaaaatgtttataagttCTGAGACCAAAATCATCTTTTTC---CTGTGTTCACAGGGTGAGCACGGACTACCTGGTCAACCCGGAATTCAAGGTAAAAGAGGTCCCCAAGGAGCACAAGGTGATCAAGGACCACATGGAGAGCCTGGCCTGAAAGGGCAGCCTGTATGTTCCAACTCAGAA---ATTCACCAAGCTCTTTATAGAACAGGCCACCAGGGCACAGGAATAATCCTCCTGTTTATTTACATTTCAGGGAGAACATGGTGATCAAGGTTTGACAGGTTTCCAAGGATTTCCAGGCCCCAAAgtaagtttatatatttttttgctatgtaattatttggg-------gggaaaaagaTGTTAAAATACTAATATGTAGTCTCTGATTTGAATCTTTATTTTCTGTCTATAAAAGTCA-GTTGGTACAAAGtcatatatttgatttttgaaaacc-TTGATTTTAAAACACATGTAGTTATA

a score=5589
s chr3           145512248 385 + 160039680 CCAGACACCCATCCCTTCACCATTTATACAAAAACCCACTCAAACGTGTGTGCATTGTTCTGGAACCCCCGTGGAAAGCAACGTCATCTGCTATGTAATGCCCCACATACAAAATATAACCTTGAACTTCTTATTGCATGGAAATTTCAATTTTGATTTGTATTAGTTAGAAATAACTTACAGCT----------------------------------------------------CTTGGATTGGAAACTATAGCAATAT-TACAATTTTATCATATACTGTCAAATTACTATAACT----TATGCTAGT--------------------------------ATTATACTATGCTTATGCTAATATG---CTAATAATATAAAAACATCACTCCAA-------------------CAGACTTTGACTG------CCTTCTTTATTCCCAACAGGAAAACACTGGCGCTCTTGGCAGAGCAGGAATTATAATATACTAAAT
s HiC_scaffold_1 131883668 485 + 233722169 CCAGTAATCTATTCCTATACCTTCTGTAcagaaattttttcaaaaatttattcatCATTctaatattttagagaaaat--gtttCCTTTGTTATGTAATA--------GCACAATGATTCATTGAATTTATCACCACATAAATACTGTAACTCTGAATTATATTCAttagaaat--tttacaaatatataaagtattgtatatataacaattatacatttatatatagatatagatgccTTGAAAGAAATctacaataatatgcacagttGTATCATACAATGT-GAATCAAGATAACTGGTTTATACTAATGCTTTAAGAAATGCTTTATATTAATGCTTTATATAAAACTGTAATTATTTGGATGTGGTTTTAACATTGCAAGAAAATT-CTCTAGAGATTTTCTGGATTATTCTCAGAATAAGCCTGGCTTATCTTTCTTTAACCCCAACAGGGAAACACTGGCCCTCTTGGCAGAGAAGG---TATAATAGGCCCAAT

a score=26839
s chr3           145513126 1812 + 160039680 TTTTTAGACTGAGACTA--CTGCTTTCTTTTACCCCCAACAGGGAAACACTGGCCCTCTTGGCCGAGAAGGGATAATAGGCCCAACGGGTGGAACTGTAAGTTTATTACAACATAACTTTTACTCTGTTGTTGTTGTTGTATGATGATGATGATGTTGTCGCCTATCCTATTTCTAATTCCAGAATACTCCATAATGAATTGGCTTGGGTATTTGAGAAGCAAAGGGTGAAAAGGCAAATTCATA--TTTCCTTCTGGGGGCCACTC------TTCAGGGT-----CATAGAATAATAGGTTTGAATGGTGGAGGAACTCAAGCTTGAGAAAAGAAAAACCAACGGAGCCAGGGAGGGGGAGCAG---------TAGACAGAGAAGCAGTCACTAAAGCTGTAAGCATGGGTCA-AGTTCTGAAGGAAAGAACAGAGA--GTGAGCTGAGTTCCGACTAATAAGACCTGAGTCTTTATATcagtggttctcaacctccctaatgctgggtccctttaatacagttcctcacgtcatggtgttcaatgcccagagaggtagcgaccca-caggttgagaaccactgGCTTAAAAGCACCCACTATGAAAAGTAAGATGTTGGTAAAATGAG----CAAGAA-AACCAGGA--------TAATGGA--AGGTTAGGCATGACAGAAAGGAGTCTCTGGTGCAGGCTACACTGTGAGAAGAA---TATGAAAATGTACAAGGCTAAC-TTCTCTCAGAGGCTTTTTGTCAGCACTGTGGCTTTTGTTTTGCTTCATTTTCTGT--GACATTTCTCAAATTGGTACAACACGTGGTTGGAGTGGGTATCGCTTCTGTTCAGTGGATGAC------------CTTTGTAGAGGGTCATCTGGTCCATCAAGGTAAGGAACCCAGTGAGTTACACAGCTGATG------------------TCTCCATTTGTCCAGGCCATGTCTGGAGTGGACATAGAATCAGCATAGCACCAG---------------TGCCAGTGGTAAAGCAAATCCAAGAAATAAGACAATGGCT-GAAACATAGTCCCGGG---------------CCCATTATAGTCCAGAGAAGTTACGCACAGAAGAAC----ACAGTC----AGGTAGAGCCTGGGAAAACCAAGACTCATTCCCTCCCGGGAAGCCATATTGTAAATCATTTGAAAGTGTTGCGTGTAG-TCACATTTAAAATTGAAAATAGAATGTTTCAAGTTTTAAG-----------------------GAG----------------------------------------------------------------------------------------AGCTCTTCTCTTTGATAAATTTAGAGAATGTGCCATGAAAGTTACTGGAGTTCATTCAAAAGAAATAAAATGTGTAACT---CATTCTCTTGGCTTCTAATACTTGCTATTCAGAGCAGCATAAAACTGTAGGTGGGAGAGTTCTCATAGTTCAGTGGGTGGTTCTGCAGCACACGCTGTTCTGGCTAAGGAATGATTGTTC---TCTGTCAAAAATGCGAAGTATT-ATCGGTCAAGGAAAATGTGATAAAGAAATGTCTCAATGGAAATATCTCACTGTGTTTTGTTTATACCATAGCTGTTAAAGGTCATTATGCTATTCGATGTGCACATCAAATTTCTTTTCAAATTTTTTCCATATTCTGTTTTTTCCATTCTAAGAAGAA---TCCACTAT-AAGAAATAATCATCTGAAAATCACACACACACAAATATTGTGAGGGAAAATCAGTAGGGGTGGAGTCAGTGATGGAGACT-------------AATAATGAGGGTGCAACATTATC-CGGCTGAAA-----------------TGTCTGATGGTAGAAAGAAAGACGCTGCTCAGTGTAACAGATGAAAGGACAGAATTAGATGTGCGAGTGTATTGTAA---TTTAATCATTACAAAAACTGCTGCAAGCAGTGGGAATCCCGACCCAAACTGACTTGTACAGGAGTAAGGACAAAAGATTTCTCATT
s HiC_scaffold_1 131884067 1883 + 233722169 TTCTCAGAATAAGCCTGGCTTATCTTTCTTTAACCCCAACAGGGAAACACTGGCCCTCTTGGCAGAGAAGGTATAATAGGCCCAATGGGTAGAACTGTAAGTCTGTCAAAATAtggatctttttttctcttttatgcttT-----------------------TCTCTTATTCCTATTTATAGAATAATCCTCCAAGAATCATCTTG-----------ATAAAAAAGGGCAAAAGTaaatagatatttttcttcttgaaggTCATTTTGAGAATTTAAGGTTTATACATGTAATAA-AGGTATGAG-AATGAGGGAGC-------TGAGAAAACAGA-------------AGTGAGGTGGAGAAGGTAATATCATAAGCAAAGGCATGATCACCAAAGCAATAAACTTGGatcatttttcaaaaggaaagaatatagaTGACAAAAGAAGGACAGACCACCAAGATTTGAGTATTTG--------------AAACTATCCAATGCAAGG------------------------------------------GAGAAGTAATCATTGatcaggataaaa----------taaaa------accaagataaGTCCAAGGTTATATAGATTAAATTTCAAGAATGGTCAGTGGTGATCTTTAAGGGACTAAGTT--GTAATACAAGATGGAGTAT-------AGATTATAGTGAAGAAAGAAATGGATGAAAACTTTTAA---TAACTTTTTCTCAGATACTTTTT-TTATTCCCatgagtttagttttattttgtttctcttccccCAGCTCTCATATTCTTACAGCAAACTTCTGGAATAAATAGTATTTCCATTTAATAGATGAAGAAGCAAATGAGATTTATAGAGATTTACCTAGTCATCCAAAGTGATAGAAATAGTGAATTCCACAGCTGATGTTTCTTAGACAAGCACTCTTTCCACCCATTCACGCTACTTCTAGAGACAAAATTGAGGCAACATATTTCCAGTTAACTTATGATATTTGCCTATGatgtaa-------aataaacaagacaatTACTGGGAAGGTGGTCATGGGAAAGTTTTTGTAATTCTGATAATAgtgtaaa-----catgaaaaaaaaaaccactacaaTATGAGAAATTGAGACTTGGAAAGGGAAAATTAATTCCCTTCAGAGAATTCATATTTTGAATCAAGTGCTATAGACccacagagataaaaaaaaaaaattacaatggaaTGCTTCAAGAATTAAGtttaggggctgggatttagctcagaggcataagtgcctcccttgcaagtgtgtggtcgtgagttcaatccctggtacccataaaaaagaaaaagacaaaaaaaaaattaagtttaactATTATCTTTGATAA------TGAATTCACCACCAGCATTACTAGGTTTTtagttaaatgaagaaaatgtgaaactCAGCATTCTCTAGACTTCCAACTGTTGATACTCAGAACTATATAATATTGTAAGTAGGACAGTTCTTACATTTCAGTGAGTGTTTCTTCAG--CAATTTTTTCTGATTATGGAATGATTGTTCTCTTCtgtc-aaaatatgaaatattaattgTTCAAGGAAAATGTGATAAGGAAATGTCTCGATTAAAATATCTCA--GTGTTTTGTCTATAGT-TGGTTGTTAAAGGGCCttataatgttcagtatgcaTATCAAA-------------TTTTTTCATACTCCATTTTTTCCATTCTAAGATGAAAAGTTCATTATGAAAAAATAAGCATTTGAGAAT------GGCAAAAACATCATG-GAAAAAAACAGTA---GTTGAGCTGAAGATTTTGGTTTTCcaaataagaaaacagtaaaactaCAAAGTCATTGTAAATGAAGttacacatatataaaattatgtaataGTAAAAAAA-------TGATCAGTTTAATAAACTAGAGCTTAGAAATAGATCtataattataatgaaaatgGTAAGTCAGGATTATTTTGACTGCAAGTAACAAGAAAC----CTCAAATGAGCTTTAACA----TAAGGA-AAATTATGTCCCATT

a score=14648
s chr3           145515609 1910 + 160039680 AAAGGGGAACAGAGAGAGAA--CGAAAGAGAACGAAGAAATTGCTCTAGAAACTCGAATTTCAAAGGCAAAGAGAAACCTAACGGAACTTAGAGATTGAA---------AGAAATTCCTCTCCAAATGCACCTGTGAGTGAATATCCGA-CAGCTGTCCTGGCCCCACTGGTTAAGTAAGGCCACCGGT-GTTGTTTCGATTTCTCCGTGGGGTGGCCTTGGAG-TGCTGAGCACACAGAACAATCCATCAGTATAGGTTGTTTGTTTGGTTTGGTTTGGTGGGAATTTCTGATTACTCAGAAAATCTA---------------TGAATTAACAAATATTC--CTAGATAATAAAATGAAAGTATAAAATGACATGTTCCT---GAGTCCAACCATTGCTGCATCAGACAGACAATGGCCCCTGACATTGAACCACTATCTTTTTTTTTCCTCTCTTTTAGGGACCCAGAGGTGAAAAAGGCTTTAGAGGTGAAACTGTAAGTTTAACTAAATGACGAAATTTCTGGTTACATCATCCTTTATCTCT-----------------------------TTGTGAT--TTGCCTGTCA-----CACCTGTTACTTGTGGAGTAA----AAAATTATAGTTGTCAAGAAAAAGAATTAACCTGTATGGTTAAGTATGG----ATCTGATGAGCC-CTAAACGTGCTTAAGGGCCTGTCAATCATAGTCTCCCAAGATCACTGTGTA--------------------------CAGGAAAAGA----TTCACCTTCTCCAGGGCCCAAGCAACAGCCCTGCCAGGTCATGTTAGGCACTCATGCTATACCCAGCCAGCACTAATGACACTGCAAGGGAGACTCAATGCATTAGCT---TGTttgtgctgttctaagacagactctcgctgtgttgcccaggctagctttaaa-----------ttttactccccctctctc-----ttctc---------ctccttctaagggcagggatgaca-----------------------------ggcatacATTCTTAAGAAAATTGTTGTTGTATATTTGTTCAGTGGTA-----------GTGTGAGCTCTGTATAGAGATATTTTAAAAGGCCACCACCGTGAAGCAAATGGGAACACCCACCATTTCCCACAAGTACCATCACTTGGTTGGGTTTTGCCACAAGG-----------------------AAGATTCGTGTTGACCAGACTGCAGCATCCCCCATGAAGAGACAGTAGGTGTGGAGTG--------------------------------------AATTAAT----------------------------------------------------------------------------------------------------------TACACCAATTACCTGAAAAGGGGAA------------------------CACATGACGTTAGACT--------------------------------------------------------------------------------TTCCCAACAGACAATAT-----------------------------------------------------------AGCGGGAGGCAAGATCACACGCACACAGGGAGTCT-TATCTCTCGGGCTGAGTAGAAATGGGAATGAAAACCAGAGG---TTGGTATTAGCTCACTTCCTGTATCTCCCTGGCTCTGCGTGTCT----GGCTTATCCT----AAGCACAGTGGCTAGATCATAAGCTTCCG-TGAGGTCAAGAAACCTCAGGAGCCCGTGGCGATGTCATAACGCAGGAATGTTATAAGCGTTTTCCTGTGAAAACAGA-----TTACTTGCTCTGACAGATTGAAAACGCCATGAGTTATGACTGTAATTTTAGATTT--CTGATAAAAATATGGCATCTAGAATAAA-CAAGGTAAAGACCATGCAGGTCATTCCCCTCTAAATGAAACAAACCGAGCTGCAGCCGCTTCTTGCTGAAGGGTCCGAGAGCCAG-GCCTGGAAGGCCCTGGAAAGCCAGGTGCGTGGTAGATAGCTATGATGTTTAGACACTGCACTCTGATGCCTTCCTTCTCTTGTTCTTTCTGCAGCCTCCTCACTTAAAGTTCTTGTTCCTGGTACTTCTGTGCTGCACTCTTAAGCCCCTTTGTTTCTGTTCATCTGGACATGTCTATTTAAAGGCCATTTACATAGGCTGGACTTGCTGGAGTATTGGGCATATCCTGCCCCCACCTCTGGAAACAACACTTAATACCCAGGACTGAGAACAGTGCCTGTCACCTGTAGCTTGGTTCTTTTCTTTGGAGATACCTTACCACTAAGCCTTTTCCTCAATAAGCCTAT
s HiC_scaffold_1 131888127 2245 + 233722169 AAAGGAGAATAAAcagagaagatgaaagaaaaggaggaactaGCT-TAGAAAAAGGATTTTCAAAGGttgaaggaaac------aaacagtaaaatttaACCTTAATTTAGaatttcctttctaatt---tttttatgtgATTGTCAGATCAGCTGTTCTGAC--------TTAAATGAAGGAATAGTTTGTAGTCCTCACCTCACTTTAAAATGGATTTGGAGATAGTAAATCAGAAGCATCATGAACCA--Ataggttattttt---gtttgtttttgcga------------ACTCAGGGAAACAAAATtgaaatgcatattaaattaacaaattttttactacagagaaaaataaaactccaaagtgtcattttttttttatgtacaaCCTCAACTACATTCAATTTATAATTATTGATTATACTGACCCAACATTGTTTTT----CTCCCTTGCAGGGCCTGAGAGGTGAAAAAGGCTTTAGAGGAGAAACTGTAAGTATAACT--------ACTTTTGTGACTATAATATACCTTGTCACTAGGCTATAAACTAGGGGAAATCAAGGATCTTGTTATAATTGTTCATCATTATGTCCTTGCTGCttgcaatataaaaataaaattatacttttcaaG---AAGAATTAACCTATGTGGTATATTCCAGTGAAATCTGataaatcattaaaaacattaaagaacCTGCCAGCTAT--TCTTCCTGGATCACTGTGTGAAAATGGTATTTGCCCTGTAAGGCATCAGGAGAGGAGATGGATGTCTTCGCTAGTAACAGAAGAAGAGCACTGCAAAGTGGCTTTAAGTATACATCCACTATCCAGTCAGAACTGAC-------TAGGTCAGAAGCAAATCATTAGCTGTGTATTTCAGCCAATTAGAAATAATACCAGGAGGTGGAGCCAATGGTATTTTTAAGACCTAAATGGCTTTTACGGACACTATTTCACATATTCTTAGAATGTCAATTCTtccaagttaaaggaggacaTTTCCACTTCCCCAGCAGAGACTCAACCGAGCAGACTTTTTAACACAAATTGT-----ACTGTTTGGATTATGGTATATAACATGATGTATGGGATGCATACAA-------TAAAAATGTTACTACGGTGGAAAACGCTAACATATCCATCATCTCACATAATTACC--CTTTTTGGTGGTTTGTGTGATAAGAGTAGCTAATATTTTACACAGCACAGGATTCCTGCTGAACTTACTGAAGCAGCAGACAtaagcaggaggcaggag-gaagtgAACAGAAGATTGAAAGTATACAAGCTCtataagaataaaattaatgataGCAGTAAAGTCTTAACTAAAAGATAATGAGTTCACATAGTGATGGCTGATTTTTCCTTCTCATGACAGAGTATGCTTGGACTTAGAATATGAAAGTTATGGGTATATTAAAGAGCTGAAAAGGGGAAATACAGTGGTATTATACTTCAGTTCACTTAACATCCAACTCTGTTTGTGactagaatcatggaaagaatcaagttcatgaactgaagtaCCACTGTATGTGAATTTAGATAGCCTAAGAATTCTAAAAGGACAGTACAACAAATGTGTTAAAGTTGTGGAAATGTGGCCATCACTGTCTCTCAGTAGACTTCACAGAACAAGAAGCAAGAATACACACACATAGTGAAGCTGTATCCTTCAAGAGGgatggaaatgagaaaaaaaagtaaagagatgTGAAACTAGCTGGCTTCCCACACCTTTCTGCCTCTGCATGCCTCCTGGACTTTACCTCTCCAAGTAATGTGGCTAGAACACAAATTTCTATTGGGATTAGGATATTTCAACTATCTATAGCAATGTC--------------CCATAAGTA-TTtcatgaggaaaaagaaaagctgagtGGCTCTGATGAATTACAAACTCAATGGATTAAGACTACAGTGTTCTGTTGTACTAATAGAAATATGACCTCCAGAATAAAGCAAGAGAGAGACC-------------------AGTTGAAATA----------------------TCTGCGATATTTTAGAATCAGCTTCTGCTAGACTCTGTAGC-CTAAGTACATCATAG-----------------------------------------TCCTCGTACTTTCTGTTCTCCCCTCACTCCTCACTTTTGCACC---TATTTCTATAATGT-CTTCCATCTTCTCTTAGTTCTGCTCTTGaagttttaaatatgaaaagatcATTTGCTCAGGGTGGACTTGCTGATATCTTGGACACACTCTGCTCCCATCACTGGTCATAATTGTTAGTACCTAACACCTAGCATAATGCCTGATACCTTAaac----atcttttcatttaaa-------------aaggctTTTTCTGATTAA-CCTAT

a score=12966
s chr3           145523766 557 + 160039680 AACTTATAGATATGTGAAGGGAAA--CAGTATATAAAAACAATGAGGGTCCCAGCTTTGGTGGTTA---GGTGGGTGCTAATAGAAATAGC------------TCAGGCTGAATTAAGATTTTTACATCATAATTTAATTTGTTAATTAAA---------CTTAGTCTCCCACCACACATGCACAAGTACAGGCACAAAAACAAATTAAACTTCCAGGTTGTTCAGAATTGTGGGCCATAGTTAAGGGCAAAAGCTTTTAAGTCCAGAGTCAATTGGGAATCATATGATCTGCACAACATCAACAGGCAACAGCAGAGGTTGGGTCTTGGTTG--------ATACCAAATCTAAAGC----------------------------------------CATCTATATATTGTGCTTTGTCTTCATTTCTTTTAGGGTCCCCAAGGACCGAGAGGTCAACCAGGACCCCCTGTGAGTTCATTTATATTTATATTTGTTTGCCATTGATGAACATACAGTGCCTGGTTTTGAGATATTTACTAACTGGGTTTTCTTTTCTTTTGTTTTGTGATTTTGTTCCAGGGTCCACCTGGAGCACCTGGTCCAAGAGTAAGTCTTTTTGGTTGGTTTTAT
s HiC_scaffold_1 131900950 597 + 233722169 AATTTATA-CTATATGAAGAAAAAGGAGATGTTTAAGAACCCTAAAGTTTCT--CCTTTATGATTAATTGTTGAGTGATGGTAGAAATAACAGGGAATTGTACTTATAAAGTATTAACATTTTTGTCTtacatttaaaatagtttattgaaATGAGTGAATTCAGTTTCT------------AGTAATATCAGTAAAACAGGAATCTAGA--TACAGTTCATTCATGAATAGGGATGATAGTTAAATGCAAGAGCTTTGAAATACCAAAGCAATTTT-AATCCTCTGACTTGCCTCATATAAAATGGCTATTAGAGGATTTTAATTTTAGCTTTCTTGCTTATACCAAGTCAAAATCAGTGGattttgtttattatatatacatgtatgcatccatacatatatacactgtactttgtcttcattt-tcctaGGGTCCCCAAGGACCAAGAGGTCAACCAGGGCCTCCAGTGAg-taatttacatttatatatgtttattattGATGAATATATACTAGACTAGCTTGGGATGtctactaaataatttttaattt-------------gttatgttACAGGGACCACCTGGAGCACCAGGTCCAAAAGTAAgt-tatttgattcattttat

a score=7697
s chr3           145524710 459 + 160039680 ATCATGTGAACCTTGAACTGTTAAAGTCATCCCATCCTTCTGGTATACCTTAGTCCTTTT------------GCAAAAGCCAATCAGCTATGATAACTTGAAATCCAAGCCCTGTATTTCTTATCTAAAAAAGAGTAATTGTGTTTCTGGCTGCTGCTGcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctttttTGGTTCATTTTGAGCATTAAAC-AGTAGAAAagcatccagcaca--ggatagtacataataggtactcCAT---TTCTTCTTC-------TTTCTGGGACTTGGCTCTTCATTTTAAATCTTCTTTTAACCATAATTCTTTTCT--TAGGTTTTACATGAATCCTTGTCAGTTTCTAGTGTCTGGAGAAGCCATCAGATGGCTCGTGTGTTTGCTTTTGATCTAACTACTGCAGCCTAAA
s HiC_scaffold_1 131901553 382 + 233722169 ATCATGTTAGCTCC---CTGTTAAA-----CCTATCTTTCTTGTGTGCCTCTGTTCTTTTTGCTAAACTGTTACAGAGCTGTATCAACTATGCTAACTTGAAATTCAAGCCTCACACTTCTTATCTATAAAGTAGAAATTGGGTCTCCTG-------------------------------------------------------------------------------------------TTTTCTGGTTGGTTTTGAGTGTCAAATAAAAAGTTATGCATTCAGTAGAGTGTATGACACATAATAGGTGCTCAACAAATGCGTCTTCATTTCATTCTCTGAGTCCTAGTTCTCCTT-----ATTCTTTGCTAGCCAAAATTATCCACTTCTAGGATTTACATCACTCCTTCTCAGTTCCTGGTAACTATAAAAATCCTCAAAATTCTCATGAATCTGGTTGTTACCTAACTACTAGACCCCCAA

a score=47101
s chr3           145535587 1935 + 160039680 GTCATCTTAAAAGTTCAAGAGAATTTTTACTCTGAATAGTT-GGGAGCCACTGAGCTAGGTGTTCTA-TTAATAGTTTTAATCACATGCCAGGagccagcatggtggcat----gcacctgtaatcctagcaatg-----gggttgct-------gagccaagaggatagtgagt------tcaaagacatcctgagttacataggaagactttgtctcaaaTTTTAGGACTGGCTAATCTGCAGAAGA-GTCTTAGCCTAGCCTTCCCTGCTCCCTGAAGAGGTCATGACCCATGGACTTTAAGCCTGGGTTGTTCTTGTGCTTGGGAAACTCT----CCCCTTTGTCTCACCACTGCCAAGCTTCCTTACA---TCCACTCAGACAGTGCCTTCCTGAGACAATGTTTCCT-----------CACCAACATCTGGCAAGCTCCAGTTTTGAC-----TCCCAATTGCTCTCGTTGTCCCATGAACTTTTCTTCCATTGTACATGT-ACCATTTATAGTCACCTGATTTTCGATCTCTTGATCTATGCTTGCTTCGACTTTCAGGTTAGCCTCCAGGGGAACAACTTCCTCTCAGGTTAACCTCCAGGAGAACAACTTCCTGAGCTGCTTACCATTTTCTCCTCAAGAGTTGTCATTCTGTTTGGAAATCTGTGTGTGCAGAATGAACGAGTTATTTTCCAATATGAAAACCACATGTGAAGACAAGCGGAAAAAGTCGTTTTTATGGATTGTTCCATCATTTAAAATGGCTTTTCTGATTGCTAACCATGACTTGAGAATGAACTGTTGATAAACAGTTTCTATCCTGTGGG----CAAGCAAAAAGATACCTCAACATCATAAGCAATCTGAGCTAAATCAGAG-----GCTGTGCTCACACAGA-------TGTGAATACCCAGGACCTTCTCCCAGCTCATGAGCTTCAATTCATGTAatatatatacacatatatacacatatacatttatacatatatgtatgtatatatattacattatatatcatatatctatataAAATTACAGAAAGACTATTACAAATAGTTATGCTGAGTTTCTCTCCTAAAATATCTTTTTTTATTAAATGCGGGAGCAGATTGAGTTTGTGCTGTGTTCTTTCTTTTGGGACTAATAGTACATTTTCCAACTTCAGAAATTGTTTTCAGGACCACAAAAGTATCAGATTCGACTACTGCGGTGACTACCTCAGGACAGTAGTATTTTATTCTACTTTCCTTCCAAGAATAGAACTGTTTTAAAAATTGCTGCACTTATTTATTCTTCAGTTGACAATTTATTGCATGAGGGAATTGTGTTTCACTCTTCTTCCAC-TCGAGTAATGGTATGTGTGCGCGTTCCTGCCGCGGGGACAAACAGCTTGCACTGGAAAGCT-TTGGAC-CGAGTCCTGCTTGAATGAGTGAGACCTGTGGA-ATCCGGATGGAGGTAGCATCTTGTCTTTCATATAAGACAGCTGGGTCTTACTTGCAAGATCTGT----CATCCTGAGTTGCAGATTTCATTCAGATCAATCTAGTACG-TTTCGCATCAAGGCTCCCAGAA--CAAAAT----------GAACAGAGGTTGTCAGAACAGCCTTGATCTTATTATGGCTACCTCAGttggttttttggtttttttgtttttttgttttttACACAGAGACAAATGGATATCAATGCTGCTATTCGAGCTCTGATAGAATCAAATTCTGCCCAGCAGATGGAGGTAATATATCTGGCTCTATTTATATCAGCAGTTT---TGTTATTCAAATTAAACACAGGGATTTTTATCTTTTGAAAGCCAAAACTCAGCATTATCTC---------------Agcag-----------------------------------------------------------------------------------------------------------------------------------------------------------------------tgctggcacacgcctttaatcccagcacttgggaggcagaggcaggcggatttctg--agttcgaggccagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaaAATATTATGTTAA---AAACAGAAAA
s HiC_scaffold_1 131914304 2027 + 233722169 GTTatataaaaaagtacaaaacattCTGATTCAGAAGAATTTGAGAACCACTAGGCCAGATGTTGTAATTAATGTTCTTAATCAC-CAACAAGAGACTGAgtggaaatataaaagtgactgtTGTT-TAGCACTCCCCTCAGTTTTCCATGTTTAGTGCCAATATTTTTGTGTGGCCCCTATCCAAAATTTTCCCATTTCCAAAAGAAGGTTGA----------TGAgaattgtttaattttcagagaACATTTTAGGTTAACCCTTTCTGCTCCTTGAATAATTCATGTCTTGTGGCCTTTGTACATGGTTGTTACTTCTGCCTAAAAAGCGCTGTTACCATTTTCCCCTAACAATTCTTACTTATGCTTCAGGTTTTACCTTAACTGTTACTATCTGAGGAAAGCCTTCCTTGATTTATTCCCTGTAATATCTTACATCCTCCAGATTTGATAAACTCCCTAATTTCTCTCATAGGtacacacatttttctttcacagtACATATCACAATGTAT-----TTTGAG----GGTTACTTGATTAATGCTTGTCTCCTCTCTAAACTTAAGTTTCACAAGGACATTTTATCCTCAATATATATTACAG------------------TATTTGGCAGTTTTTATGTAA----------------TGAAAGTGACTGTTTTCAGAATGAGTTGATT-TTTTCCAATATGAAAAACACATGTTGAGGTAAG---AGACAGTACATTTTATTGATTGTCCTatcattttaaatagttttttagaCTACCAACTATGAGTTATGAGAGATCTGCTGA-AAACAGTTTCTACTGTGTGGATCTCCAAATAAAAAGATATCTTAACAGTACAATCattctgaaagaaattaaattgctTGGTTCACTTACACAGAACTATCTCTTCATTTCCCAGAACCTTCTCCCAACTCATG--CTTC-----------------------------------------------------------------TTACTTTCCAAGctg---attcaaaaaaaattacaaaaagactTTTACTAATGGTTATACTgagtttttctctaaaaatatctttt---attaaatGCAGGA--AGATTGGATTcatgctgtattatttcttttgggaCTAATGGTACATTTTCCAACTTCAAAAGTTGTTTTTAAGACCGCAGAAGTATCAGATTAAACTAATGTGGTAACTACCTCAGGACAGtagtattttattctattttcattcCAAGAATGTAACTG--TTAAAAATTACTACAGTTATTTATTCTTCACTTTACAATTTATTAAGTGAGAGGATcatatttcattcttcttccaTATTGTGGAATGGTGTATATACGCTTTTGTGCAACAGgcaaaaatagtttttcatgtaAGGGTGCTAGACATTGATCCTATTTTAATTAG-GAGACTTTTTGAGATCTGGATGTAGGCAGCATATGTTCCTT----TCAGATAACCACACAATATTTGCAAGATTTGTCTAACCTTCAGAATTACAGACATCTTTTAGACAAGTCTAGTGTACTTTAACAGCAGTGCTTTCAGAATTTACAATCTTTTCTTTAGAACA-----------CACAGTGTTGATCTTATTGCTG--ATCTcaaatggttt---------------------tgttttacacAGAAACAAATGGATATCAATGCTGCTATTCAAGCCTTGATTGAATCGAACACTGCCCTACAGATGGAGGTAACATAT-TGGCTTTATTTATATTGGCAATCTCAATATAACACAAATTAAACTGAAGAATTTTCA-------AAGGCCAAAATATGGCACTCTCTCAAAGATTGTATTTAAAACAGATTGAAAATATGAAGCCATTTTCAAGAAGAAATATACATAGGGTATTTCATaaggaaaatgtttaaaacaaaactaccactgtaaaaagatttatttgtaagaaattggtaccactgaagaaaataattaaaagtaatctttaaaaaaaaaagaatattgccAGGCAtaatggtacatacctgtaatcctagcacttgagaggctgaggcaggaggatcgttgcaagttcaagaccagcttgatatacaaagtgagctcaagaccaacctcaattgcatagtgaaaccctgtctcaaaaagaaaaaaaatgacaaaacaaacaaaaaa

a score=19770
s chr3           145538273 715 + 160039680 TTAAAACTCTATTTGATGTGGAGTTTAGAAAGTGTAATTCAGTAGGCATAGAAATTCTTT-AAGTCTCTTGTCACCTTACAAACTAAGTTTT-------------GACCTCCTATTGGGATTCGGAGTTAATAAGCTG-------ATGTCCACAGTTAGATGTGTTCTTTCCTT------CCTATCCCAACACCTCTAAAAGCAATTAGGATCGCAGCCTCACTGTGCTTTG-TGCA-GATTGTTATCAGGATCTT--------------------------------------------------------CTTGCTTATATGATTCTTATGATAA-TTGGCAGAGTTACCAGAACACTGAAGGGACCTTAATCAGCCACAGTTCAGACATATTCAAAACCCTGACCTACCTTAGCAGTCTCCTGAGCAGCATCAAGAATCCTCTTGGCACCCGAGAAAACCCAGCACGGATCTGCAAGGATTTGCTCAGCTGTCAGTACAAGGTTTCAGATGGTAAGTCCTTCCTGTC---AGATTCCCAAGTCTAACTTCCT-----CATTCCGAAACATTCGGGATCTGTGAT-------CTTCAGATCTCTGTCATCTTGATAA----AACATCAGCCAAGCCCATCAGAATTTCAGCAGCGCTGACATTGTCTTTGAGGAAGATATACTTGTGAAAAGA----CTCGACTCTGTGCTTTGTTCACACTTTGTATTTGCAAAAGTGTGCATCATAGTTAAAATCAAAATAGGGAAGTGTAGTGTTAGGGGTGATAGACAAGAACCCACCATAGGCCTTGCTATTTCAAA
s HiC_scaffold_1 131916379 815 + 233722169 TTTAAACTCTATtacatgtataatttaaaaagcattaaacaGCAAGCATAGTAGTTTTTTTAAGTCTTCCATCTGCTTGAAAACTAAACTTTCCAGTATGAATTTAATCTCTTACTGAAGATCAAA-TTAATAAAGTATATACATATGCCTAtgcttaaatataatttattctttatattcttctcCCAAC-TCACTATACACAATTAAGAACactttttccttctgtcctgATCCATGATTGTCATTAGGattttactgcttatttgattcttatttttttttctttttgtttttatttttgtttttgttttttgcttatttgattctTATGATGACTTGGCAGAGATACCAGAATACTGAAGTGACTTTAACTGACCACAGTGCAGAGATATTCAAAACTCTAAACTACCTTAGCAACTTACTGCACAGCATCAGAAATCCTCTTGGTACACGAGATAATCCAGCACGAATCTGCAAAGATTTGCTCAACTGTGAACACAAGGTATCAGATGGTAAGTTCTTGTTTTTCAAAAACGCTGATGTCTACCTTCATTTTAACATTTCACTGCATCTGAGATTTGCAATGCATTTATTCCAAGTCTTGGTCATTTTTGTGACCATAACACTGGCaga----aacaaa---tcattaaaaacaaaatactctgAGAGGAAGACATACTTCTGATATTATCTCCCTACCTATCTCATTTGCTTAAAGTTTATATTTGGAACACAGCACATTCATATTAAAACTAATATGGGCAAACCTGACTTTTGAGCCTTTAGACAACAGCTCTCCACAGAATTAGTAATttagaa

a score=19162
s chr3           145541512 1550 + 160039680 ataGGTGTGGCGATACGTAAGTTCATATAGTTTAGTATGAGATTGAAATAACTTTGCGTTTTGTTGTAAATCGGTAGGAAAATACTGGATTGACCCAAATCTCGGATGCTCTTCAGATGCCTTTGAGGTTTTCTGCAACTTTAGTGCTGGAGGCCAGACATGTTTATCTCCCGTTTCTGTGACAAAGGTGTGTACTGAATGTTAGAACCTATGC-------TGGTGTATTGTGTTTGGTAACAGGATCTTTCTTAATGCCATCATATAATTGCTCATTTTCAAGAGTGAAATTTAAACGTGATCCTTCACCATTCTCTATCATATATGAGAAATA--CTTTCATTGTTAAAAA--TATTTTAAAGAtt--tattttcactatacat-------agaaatgtatgtctgcatatatatgtgtgtgcaacatgtatatacctgatccctggaggggttagaaaagattcataacttcagatccctgaactgaagttatgaatggttgtgagccacagtctggatcctggaaattgaacccaggtcctctgcaagagtg--tcagttgctcttcaccactgagccatatctccagttccAAAAAAAAGATAACTGCCGTTTATCTTGGCAGTTTAATTGTGTGCTGTGTGCTCCATGGATCTTGTTTCTTCAGCTCTCT-AAAGTGTGTACAGCACAGTGTCGTGTTTTTAAACCCGCACAGACCTTAG-ACAGTCTCCAACCAGTTGCGCTGTTCTGATGAACAGTCTACAGCCACAACCTACAACTTTGTTGAAAACTGTATCATCAGTAAAGGAATCTTTCTACAAAAGCTTGCTGCATTTCAGTGATT-AGCATAAAACAACCTCCTACAAAAGTTCACTGAATGCTATTTTTAAGTTGCAAGATTAATTCTGAAAACGCACTATTAAGAGTGAATGTGGGTTTTGTT----------TCATATAACAGTAACAGTTAC---------------------------------------------------------AAGTATCTTAAAAACCCAAAGCCTGGTTCTATTTATAACACCT--TGAAATCAAAATTGTAGCT------CTTTTTCTGATGAAACTGGCTT------------CAAATGTTTTCTCATGTGTTAGCAAAGAGCTAGCACATATGCCTATCATGTGTTCTGCCCATCTTTAGAAGACAG----GAAGGCGTGGTCCGCAGCTGGTTTCTGTAGAGCCACTCCCCT-----TCGCTGAGCG-----------TGGCTTTATAGTT------------------------------GGAAATCTC--------------------AGAGGAAGGAGCACTGCTCTGCCCCTAGAGGATCCGTGTTCTCCCAACACAGAGAGGCAGACACACTAGTATAGTTCTCTGTATAAAAAACTTGTCCACACCCTTGCCCTCAATGCCCCGGAAGTTGCCTGAGGATCTTCAGACAGGTTTTT---------------------------GTAGACAAGAAAT---AAAAGAAGGGAAATATTGAACAAACGAGGTAGGAACAGTGAAGAACAATGTGTTGCTTCCTTGACTGAA--GCGATGATTGTCCCGGT-----GATAGGTAG---------TAGAAAGAGCAGCAATCAGGAACGTGTGT--GAGGAACACCCTGGACATGAAATGACAGGCTCCTGAGGGGCTTGCTCCACTCCGT---GGGACAAGGTGGA-AAATTACCATTGTCA
s HiC_scaffold_1 131923355 1614 + 233722169 atatgtatcatGACACATAT-----CATAGTTTAGCATGACATCTAAGTAACTTTGTTTTTTACTataaattaataggaaaataCTGGATTGATCCTAATCTTGGATGCCCATCAGATGCCATTGAAGTTTTCTGCAATTTTAGTGCTGGTGGCCAAACATGTTTATCTCCTATTTCTGTGACAAAGGTATAGAATAAATCTTAGAAAATATGTCATAGTATGTTATATGATATCtataaataattactttaaaatttctatcattttagtTATAAACTTTAAGAACAAAAC-------AGGTCCTTCAT--------------GCTGaggaataattttttatttttaaaaaatcacaataaatattGATGTGttcattgtggatttttttcttaattgtat---tgtacatgtttgca-gtacataatgattatatttg---tcATAGGAAGTTAGTAAATGTACATAACac----------------------------------------gtcttaattcttttattttcatc----tccTTCCCATTATTGcttccccctccctccatctctgag-----TCTCCAGCT--------------------------------AGACTtattat--------------aatgatcacatttttaaaattccttaaaaatttatacaat---gtatattatttttatacatgcacatatattagAAAAATCCCTAAGCAACTGCAATGT--TGATAATCAATAATCAGTC---ACCTAAGGTTTTGCTGAAAACTACATCGTCATCACTAAAAACTTGCCACAAAAGCTTTCTAT-TTTTGGTGATTGGGCACATCATAATCTCCCTTAAACATGCAGTGAttacta-tttaaaatttcaaagatagCCGTATAATTCAACTATTTAGAATAAACGTTAGTTTAATTTAATACCGGGTAATATAACAAGaatttatacaaaagaaaaagattaaaaaaaagaaaaagacaaaaaaacaaaaacaaacaaacaagaaagaatttATAAAGCCTACACCCTACTTCTACTTCCAACACATGCTGAAAGCAAAactacaatttctttcttttttatgcttaAACCAGCTTGGCATATTACCAAAAATGTTTTCCT---CACTAGCAAAGAATTGATACTTGTGCCTATTGTGCATTTTGTCCACCATAAAGAGGCAGCAGCTAAAAGATAGTCTCCAGCTGCTTAATGTGGAATTACCCTCTCCTTTATTACCAGGTGCTTCACTCTTTTGTCTCCATAGCCATTTACCATTACTACCCTAAAACAGACAGAAGGATTCTTCTATTCATTACTACCCTGAAACAGACAGAAGGATTCTTCCATTCCTAAGGAAACCATGGACCTTTAACAAAAAGCAGCATG---------ACAGTCCCACATCCAAAA----TATCCACATCATCATCC-CACTCACCCAGAAGTTGGCCCAGGGCTTTCATACATACATTTCatttcatacatacatacattggCTTATTATACAAAGGGTTTGAGAAGGAGGACAGTGTTGTGAAAAGGACATAGGAACAGTTAGCTGCTACATGCCAATCCTTTCTGTGACTTGCATTAGTTCTCCCATTTGTCCTATCCATAAACTCAACCTTGGGAAGACTAGAAATCAGGTACCTGTATTCTAGTGCTACCTAGAGAGTGAAACTAGAG---------------GACCCACTCTGTACAGGCACAAGCTAGATAAATCACATTTGTCA

a score=20737
s chr3           145544522 819 + 160039680 AAGCTTTGTTGATACATTGTTTCTCTTAGTAAACATTTCTTTCTGACTTACCATTTGCT----ACTACTTTAGAGTTTGGC----CAAAAATTAAAATT----CCTCAACCA-------------------AATTACTT---TTCCCA-AAGCTGTATCCTATGCTTTGGAACTCACACCAAATTAATTTCAAATGA---------------AGA---TTATAATGAAACAG-ATTATAGCATCATGCCAAGAAAATAACAATTATTACTGTATTTCGGG---TAACACAATAAAAGTTATTTTATT-------ATATACAATAGCCTAACAGTATGCTGTGGTCAGGTCACAGAGACTCACAAAAACCTTTTGTCAACGT----CCTTTCCTGGTCCCTGCCCACTGGCACCACC-TTGGTAGCCTGA-----------TGGCAGTGTTTCTGCCCTGATAATCAAAATCACAGGTCTTCACTCCCCCACCAGGAACCAGCAATT-----AAACCTTTGCCGGCCAGTACACCATCTATTGGCATGCAGATTCCAA------------------ATTTC---TCAAGCGGCCCTTCCATAAGTTTCCCC--------------TTATCATATGTT----TCT--------------------------------------------------------------------------------------AAATCACCGTATGTTATGACGTGACTCTTGTTTCTATGATACTAGTTGGAGTTTGGAGTCAGCAAAGTACAGATGAACTTTCTTCACTTGCTGAGCTCAGAAGCCACCCACACCATCACCATTCACTGTCTAAACACCCCAAGGTGGAGCAGCACATGGGCGGATGGTCCAGAGTTGCCTATTAGTTTCAAAGGATGGAATGGTCAGATTTTTGAAGAAAATACTCTACTTGAACCACAAGTCCTCTCAGATGACTGCAAGGTAAGAAAACAGCACTTTTAGAAATGTGGCTTAAAATGA
s HiC_scaffold_1 131925535 997 + 233722169 aaaacttatttattaattcattcattcaataaacatgtATTGATGATTTATTATATGACTAGAACTTTTTTAGGGTCCGTCAACACAAAGAATAAGATTTTATCTTTGACCATAAAGCCTTTCATGGTTTAAATTACttaagttattataatatataacttGTCTTTGGAAACTCCCACCAAA--AATctcaaaaggtacaaacaaaatttcagagttttatggtaaaatattattaaagCACCAACCTTAAAACA----AATTATTGCTGCATTTTAGgctataacatttaaaaaatgatcttctttatttcactataTAGTAGACTAATGGTATGCTGAAGCCAGTTCCTGTAGGTTTAAAAGATCCTATTGTTAATGCATACCTCTTCACATTCCAAGTTCAGTGACCTCAACATGGGGAGTCTAAATCAGACATGTGGGGAGTGCTTCTACCATGGAAATTAGA----CAG-------------TACTATAAATCAGAGATTTTTCTAAACACTTA---ACCAGCATATCAATGACCAACATTTAAATTCTAAGAAAAGTAGCACTCTTGGACTTCATTTCAAG--GACTTTCCTTAAGTTTCCCCAAACCAGCAGTTAATTGCCACATttcagggtctggggatttagctcagcggcataagcacctgcctgcaagcaggcagttgtgagtttgacccccggtaccgataaaaagaccaaaaagaaattGCCACATTTTATAACTTACATATTGTTTCTATGACATTAGTTGGAGTTTGGAATTGGGAAAGTCCAGATGAACTTCCTTCATTTACTGAGTTCAGAAGCTATCCACATCATCACCATTCACTGTCTAAACTCCATAAGGTGGACAAGTGCACAGACAAGTGGTGCAGGATTGCCTGTTGCTTTCAAGGGATGGAATGGTcagatttttgaagaaaacactCTACTTGAACCTGAAGTGCTTTCAGATGATTGCAAGGTAAGAAAATGACACTTTTTGA----TTGCTCAGTATGA

a score=68718
s chr3           145550467 2151 + 160039680 CATTATCTATGAAGGGTGTTGTTTGTGGAGCTCTGCCTTGGACTCCTTG----GGAAGGCAGTTACATATGAAAGCATTTTGGTCTTGTTTTACAGATTCAGGATGGTAGCTGGCACAAGGCGAAATTCCTTTTTCACACCCAGAATCCTAATCAGCTTCCTGTGACTGAAGTCCAAAACCTTCCTCACCTTGGAACTGAGCAAAAGCGCTACATTGAAAGCAATTCCGTGTGCTTTCTCTAAGGCCCCCTCTAAGGTCAGCGGGGAAGCCATGCTGTTGGTCA-GGTAATTGCAG--AGGAAAATGTAAACAGAAAGGTA-TGTCGTTATGAAATGTAGGGGAAAGAAAAGGACAGGGGCTAAATCTTAAGAAATCTCAGGAAGAAACAATTTCCTCCCAAGGAGAAATGGCGGCATTTTTAAAGGACTA----TGATAATGTATTTAATTCTCTTAAATTTTTTTAATCGATCTGAGCTTTCATAAGGAACTCCCTAGAACTGAAATTGTATAGACTTGGAATTCTTGAGGGTTTCTTGTGCTTT--------------CGT-CCCATGAGACAGCTGGAGCTGCAGGGCCCCACGGAGCAGTACTGGATAGTGCTCCAAACGGTGGGATGTGTCTGTCTGAAACTTGCAAGCCACAGTCTGCAGCACCTTCATGTCCCAAACACTAAGCTGTGTTCAGGTCCCCCATGGGCATATAAAATCTTAG-TGGTG-CACACTACCTCTTTTGTGTTTCCTTTTGGTGTTGCTTGGTGCTGTCTCCCAAAACAGGGTGC-TGTGGCTGTCATAAGACTATTTTATTTC----TTCATCTTCGTTATCAAGAGTGTATGTACTGGTTACATCAAAAATATGTCTTAATTGTTAATACTTATTTCCATTTGTTTGGTCTCATGCTTAATAACAAGTAA---AGTTATTTATGCAAGGTCCTTATTTTATTTTAAAATTATCTTTGTGCACACGGAATCAAAGCCAGCATGCTGTAACTCATGTGTATACACAAGAG-ACCGGGGGCTTTTCTTCTGTTGTTTTTCTTCTTTAAATTGCTGTAAAAAGTACTTCAGGCCACCTAAATCCAGTGGTAGGTTTGGATTAGAAACTGGTGTTTGTGATATACTGTTTTAAAACTCCAAGATCATCTGGAATGATATTCTGTATATATATATAAATATTGTGTAAAGTTTTAATCCAGCCAACCCTTTGGAAATTTTGCTGCTGTTTTAAATTATAAAGTGTTATATTTATGCTTTTAGAAAATATTTGCTTTGTAGTACTCAATGGTTTTTCTTTCACTGTTCTGAAATAAAATTTTATTGCTTAAAAGAATTTCATAGTCTTTGAAGCAACATCGTACATAAGGAACTCTTTTCCCACTAAAACTAAGCTCAGCCCA-TTCAGTCTTTCCTTGTTGTCAGAGAAAAATGTTAGTTCAATAGTA----AAGAAGATGAC---TCTTGCTGTATGAACGAGCCTGTTGTTCATCTGTTACAAGCATACTGTTAACCTCAGCGAACCACATTTACCTGTCTATAATAAAGAGGTGCTTTAAATCATTTTGAATGATTCTTGTCTGTCTCCATTTATTACCATAATCATGTATTACACATAGCAATACAATACACATTGCCTCTGCAATTCCATACTACGTGTATTTTCAGCATTAGAAAATACATGATATGATTACTGAAGGGGCCTAGGGCTCTGTTT---------------------------CCCATACATCT-TGAAGACACAGT-----ACAGAAACAGCAACA--GTCTAAGAGA-------TGTTCTCACCAAAGGGGCTGGGAAAACTGAATGGCCACCTGCCAGGACAGAGGGTACAGAGTTTCTTTCTTTGGTGGTACAAAACAGCTCACCTGGGATCAGAGCTAAAATGC-------GCTCTTGGGGGAAGTgaagaaaaccttcgcagcatctgatttgataataattttggaaataataccaaaag--------cacagttaaga----gaagatcttagataagttggactacatttaaaggaaacttgaatataaatgacact-atcaaaagtgcaaagaagcagccaggcgtggtggcgcacacctttaatcccagc-acttgggaggcagagg----caggtggatttctgagttcgaggctagcctggtccaggacagccagggctacacagagaaaccctgtctcgaaaaaCAaacaacaacaa
s HiC_scaffold_1 131928718 2117 + 233722169 CATTTTCTATGAAAGGCACTGTCTA-----------CTTAGAATCACTGCTAATGAAAACAGTTAAGTACGTAAGCATTTCGTTCTTATTTTACAGATTCAGGATGGCAGCTGGCATAAGGCAAAATTCCTTTTTCACACCCTTGACCCTAATCAACTCCCAGTGATCGAAGTACGAAAACTTCCTCATCTCAAAACTGAACGAAAGTATTACATTGAAAGCAGTTCTGTGTGCTTTCTCTAAAGTC----TTTGGATTGGTTGAAATTTCATGCTATGGGTCATAATTGTTGCAGGAGGGGAAACGTATAGAGAAAAATAccatcattttgaaattttgg-----aaTGAAGACATAGGCTAAATCTTAAAGAATCTCAGGAAGAAAAGACTTCCTCCTAAGAAGgagaaaaggcatttttaaagaaCTCTCATTgataaagtattttattcttttaaaaagttt--attgagCTGAGCTTTGTTAGAGAA-TTCCTGgaactaaaattttataaacatggAATTCTTCAGGGTATCCTGTATTTTTTGATTCAGAACAATGTACTCATTAGACAGCTGGAGATGCAGAGCACTGAGGAGCAATACTGGCTAATGCTTCCACATGTGCAATGTTTCTGTCTAAAAGTTGCAAG-CACAGTCTAATACGTCTTATTTTCCCAAACACTAAGCTGTATTCAAGTCCCCAGTGGACATAT-ACATCTTAGCCGGTGTTACACTACCTCTTACATGTTGCCTTTTTGTGTTGCTCGGTGCTCT-TTCTAAAATATGGTGCTTGTGGCTTTTGT-agactattttatttcttttttcatctttgtcATTCAGAGTGTATGTACAGGTTACATC-AAGATATGTTTTGATTGTtagtacttatt----ttgttttggtcata----TAATAACAAgtaaaacaattatttatatgaagtccttgatttattttaaaattctctttatacaTA-AAAGTCAAAGCCAGTACATTGTAAGCTGTGCTTGTACACAAGAGAATTGAGaggtttcttttttgtgtgtgttatttttaaattgttgtaaaaa-tattttaggccAGCTACATCCAGTAGTAGGTTTGGGTTAGAGATTGGGGGTTGTG--ATACCGTTTTAAAAATCCATGATCATCTGAGATGAtactttatgtatat------atattttgtaaagttttaatTCAG-CAAATCTCTGAAAA---TGCTgctgttttaaattataaaactttatatttcTGCTTTGTAGAAATTACAGGTTTGTAGTACTCAATGATTTTG-TTTCACTGTTCTTAAAtttattgttaaaatttaaaagaatttatcaaattttaaagCAACATC---CAGGAAAAAGTCTATTACCACTCAAAT--AGATCTGCCTAGTTCAGTCTTCCCTTGTTGGC--AGGAAAATATTAGttcagtattaaaataaaaatattacacttCTTGCTATATAGAAAAGC---TTGCTCATCAATTATAAAAAT--CTTTAACTACAGAAAACCACACTTACATATCCATAATAAATATGTGCTTTCAGTCATTTTtggtgttgttttcttgt-----tatattaTTAGA--TAAATGCTAGACCCTGTAGCATAA------------CTGTA----TGTACTAtgtatatttacattattttaaaatgtctgttat-ATACCTACAAAAATATAGGACCAGTTTTTATCATTGGAGCCATGGCAGAGAAAAACCCTCACATATATGGTCACATGATTTTCAACAAAGATAGTAACACCATTCACCAGAAGGACTGTGTTTTCAACAAAGGTGCTGGGGGAACTGGGTATTTACAT-------tgaaaagaatgaagtt-----------ggaCTAACAACATCATATAtaaaaactaactcaaaatgtCATCAAAGATCTagatgtaag-aaataaaact------------------ataaaattctt--aACAAGTAAGAAAAGCTGAACATCACATTTATGATTCCGAAACTTTTTATGAAGCT--ACTATAATCAAAGCAGTTTCCAACATGGATAAAGATAAACACAGATGAAAGGA---AGCCAGATGCAATGGCttacaccagtaatcccagctactgcAGATGCTGAGGcccacaggaggatcac-aagttcaagaccagtct---------------aggaAACTTAGTAAGGCaccgtctcaaaaaataaaaaatgaaaa

a score=71412
s chr3           145575932 3016 + 160039680 CTAAACTTTGGAGGAACATGGGAGTCTGTATCTATTGCCATGCATTATTAGAATTAATCC-TTAATACTGATTAAAGTGGGTCACTTA---------TTTGAGA------------------CAATAATTCCAGTTCCCAAGACAGCAGTTTCAGCGCCTGAGAAAGGATGTGGCAAGATCCCCGCCCCTGGGTGGGAGTC--------CTGGTGGGCGTGGTCTCACCTGGCTTT---AAGGAGTGGGGCCGGAAAGCCGCCGTGCCGTAAAGAACGCTACACGTCGTGAAGAGTCGTGGC-CGGAACAGCTGCTTTACGGCTAGCTCGGCT--TCCCGC--AGGCGTGCAGAGCTTGCCGCGGCTGCTTTG--CTGCACGTGTGGCGCTGTCGGCGGTTCGTTTGGTAATCTCTCTTATTGGCTTGGTGGTGCCACCGTGAAGAACGGAGTGGCAGCTTCGGCCTAGGCTCGTGAGCTCATGGAATCTGCAGCTGAGAAGGAAGGGACTCCGGGAGGAGGTTCCCAGAGGGTAGCGGAGGGGGCGCGGCCGAGGCCTGCGGCTGGTGGGGA---GGGAGCCAGGGACTTAGACGGGAGCCCAGAAGCTGGCGATGGAGAGGAGAGGAACGGACTGGCAGGAACTAAGACCACGGAGGATGCGGAG------------------------GAGATAAAGATGGACTTAGCTGTGGTGAAGCAGGAAGTAGTAGACTGGTCGGATTTAGACAGTGGTGTTGCGGACAGCCAGTGGGTgaagcaggaggtggagggcgggcccgaggtgaaggatgagaa---aggcgtgttggaagtgaagcaggaggcggatagtagcctggtggtgaaagaagaggaggtggatgagccagaagtgaaggaagagaaggtgaaggtgaaggaggaggtgacggactgggaagaagtgaaggaggagg------aCTTGACCATAAAACAGGAGTTGTTTGTTGGTCAGAACGTAAAGGAAGAGCAAGTGATGGATGCAGCGCCTATAAAAGAAGAGG---GTTCCCTCAAGAGCGAAGCGATGGAAGACGCGAAGGTGAAGGAAGAGCCCCAGATGAACCCCCGAGTGGGCAGCAAGAGGAAATTGGCTCTGTCAAGGTAGGGCGGGGAGAAAACCCAGATGGGAAATAGA---------CTACTGGGTGGACGAGT-------------------CCTTAACAGCAGAAAGTGAGGTAAGTTAAACCAGGCGTGACG----TGGGTCCCTGAAGTCTGAGTGGTGAAGTTC------AGGTTGGGCGTGACGC--TTTCGAGGACACAGTGTGAT---GTGACTGTGTCCAGAAGGGTATGGCCAGGTTAGGGAGTGAAAATTCTGGGCATCAGAAGGCCTTTGTGGAGCCAGAGCTTGTTAAATAAGAAACGCTTTCG--CAGTCTTTCTTTTAGAGAGAATAGGATTAGAGGCGCCATCCAATA-----------TAAACCAAAAACCAGCAAGTGGGTAGACTAATAGACACATGTCAACTTACTCTTGAATTTATTCCGGGCTCCTATGAATGTTCGTTTCTTGGATGTAGTCTCTTTAATGTG------CTCATGTGACAGTACAGAAGATCAGATTGTGGTCAGATT-------------CAGTCTCAAACTCCTTGAGCT-GATAGAACTGACTGGTACCAGGTACACTTTGGTTCTCAGTATCACCAGACCCTAGAAGACCGAGGACAGATGAATCATACC--------ATTATTTGGGTGTTCATTCTGAATTCGCTGTGGAACTGGGGAAAGGGCACAC-ATTGCTGCCA---------GTCTGGGATTCATCCTTCCTTGTTTCTCCGGTGTATATGTTTTTAAAATACTCATatgtagctcatggattatacttctagacacacacaaagtctccatg--aatcacaatttcaaaaatcgctgggcgtggtagcgcatgcctttaatcccagtgctcaggagg----cagaggcaggcggatttctgagtttgaggccagcctagcctggtctacaaaAATCAGCAATTCATATTATTCTCTTAAGTCCTGTAGAAAAAAATGGGCGGGCCAGTGACTTCTTTCATACAGTTTTCTTGAATTGCACGTCATTGTAAATGTCATTTTTAAACATTTTCAT----GATTTCCAATAG---CAGCTATCATATACTTTATCAGAGTTGCTT-------------------TGACTACCTGCCTGTAAACTGTGAAATGCCCTTGAGTCCAAATTCTAAGACCGGAAGGACATACATAGAGTTGATTTTGCGTGTTAA------GTCTCAGGTGCACTCTTACAGGTGTGAGACTTGTGGGACAGAAGAAGCGAAGTACAGATGTCCACGCTGCATGCGCTTTTCCTGCAGGTAGATATGTAGCTTCCTACCTCACTCCC--TGCCTGTGTGCACTCTGACTTCAGGTACAGAGCTGCCTCCTGTTTGTTTCTTCAGTTTGCCCTGTGTAAAGAAACACAAAGCTGACCTGACGTGCAGTGGAGTCCGGGATAAGACCGCTTATGTGTCGCTGCAGCAGTTTACTGAGATGAATCTCCTGAGTGGTAAGTCACTTTGTGCACCACCCAGGGATGCCTTCTGGCCACTGGCACCGTGTCACTCGTTAACTTGTCCATTCTGAAATTACAAGACTATAGATTTTTGGAAGACGTGGCAAGAACGGCAGACAAGGTTTCAAGAGATACTTTCTTGAAAAGACCAAAGCGCAAAAAATATGTAAGTATTTCTTCTAATCTTTTCAAGTTCAGATCTCTTCCACCCAGTTTATTCATTTCTCAGTTGTATCAAGTGGTCACTGCGCTGTGGGGCTATTCTGGTTATTTGAGATGGATCCAAGTACTTACCCTCAGGCATTTGTACTGTAGAGGGGAGGTAGTTGAGTGGGGGAGTTGGGAGGTATAGAGCAGCAGATAGAATTTCTTACAGATGTAAGTGCATG-AGGAAGTTAAGATGGTTCAAGAGAGTAAA-----GAGAACAGGGTGCTTGAGGGGCATGGACTACGCAGAGTGTGATTATCAGCACAGTGGTAGAGATGAGCTTTCCTGAGACGGGACAGATAGGCAGTGGACCTAATGGTATGAAGTGGACAGTT-----GGAGACATTTAGAGGGAAAC---TCTGAGTGGAAACATAGGCAGAAG
s HiC_scaffold_1 131951277 3029 + 233722169 CTTAAGTTTGGAAAGACA-GAACGTCCATA---ATTTTCAAACAGGACTAGACTTAATCCGTTAATACAAACTAG-GTGGGTCTTCCGATGACAAGGTTTAAGAGTTTAGGTCTCCTCGCTCTACTGTCTCACATTCGTTGGCCAGAAGC-----CGCCCGGGGCGGGGTAAGG--AAATCCCAACCTGGAGGCGGGAAGCAGGAGCCACAGTGGGGTGTGGCCTCATGAGTTTCTCTCAGAGGATGGGGCGGGAACGCCGCTCAGCCGGAAAGAGCTCGATACGTCGTGAAGTGCCGTGCTGCGGGATGG-TGCTTTACGAC-AGTTCGAGTGCTCTTGCTTGGTTGTTCTGCGCTTGCGG-----GCTCCGGTCCACACGTGTACCGCTGTCT----TCCGTCTGGTGATCCTGCCTGTTGCTGTAGTGCAGCCACTTAGCAGGACGGAGTGGCTGCGTAATCCAAGGATCGTGAGCTGATGCCATTGGCTGCTGAAAATGAAGAGGGCTCTGGAGGAGGTCTCCAGAGGGTACCTGAAGGGGCGCGGCTAGGTCCTGAGGCTGGTAGGGAGGTGGAGGTGTGGGATTCAGCAGCGATGGAggagcctggtggaggagaggagggaaatgcACGAACAGGAGTGAAGAAGACAGAAGATGCAGAGGAAGGAAGCGAGCAGAGGGCAGGAGAGATGCGAGTGGATTTATCACTTGTGAAACAAGAAATTATGGATTGGTCGGATGTAGAAGGAGGCATGTCGGATGCACAGTGGGTGAAGCAGGAGGTAGGGGATGGGTCTGAGGTGAAAGATGAGAAAGCAGGCATATTGGAGGTGAAGCAGGAAATGGATAATAGTTTTGtagtgaaagaagaaaaggtcGATGAACCAGACGTGAAGGAAGAGAAAGTGAAGGTGAAGGAAGAGGTAATGGATTGGCCAGAAGTGAAGGAAGAGGAAGGTAACTTGGAGATAAAGCAGGAGATGTTTATTGATCAGAATATAAAACAGGAGGACATGATGGATGGAGTGCATGTAAAAGAAGAGGAACATTTCCTGAAGAAAGAAGTAATAGAAGATACAAAGGTGAAAGAAGAGCCTCAAATAAATCCCCCAGTGGGCTGCAAACGAAAACTGGCCATGTCAAGGTAGGGCTGGGAGAAATTCAACTGGGGGAGTAAAGCTGTGGAGTCTTTGGGGGAGCGAGGGGTTGGTGATTGGGAACTACACTAATAGCAGAAAGCGGAGT-AGTGAAAAATAGCCCTACAAGGTTGGGTCCCTGGAGTCCGAGTGGGATTGTGCAGAGAAAGGTGAAGGGAAATGTTGTTTAGCAAACTCAATGAAATTCCGTGA--ATCGTCAGTGGGTAATGGTCAACTTATGAAGTAAGCATTCTGGGAATCACAAGACCTTT-TGCAACCAAACCTGGCTAATTTAATAAACTTTCCATTCAATATTGATTTAAAAGATTATACAGTTCAGGACATCTAACAATGACAAAGTTGATTAAGCTAAAAAT------------------ATAGGCAAAAATTAGCTTA------AATTTAGT--GAGC-----TGCATGTTT------------TAATTTCCTTAGTGTGTAATTATGCTTGTGATAACATAGGAAATGAAATTGTGGTGAGACTGTTAGGAATATAACTGTCTAGAACACAGTGAACCAAATAGAAGTAGCT-GTAAAA----------GATTGTCACTACCCCGTGGTCATAGAGAGCAGGCAGATGATGGGTAATAGCATTTGTAAATTAATTTGATGCCCATTCTAGGTT-GGTGTGGAGTTGAGGAAAAAAGACATGAATGCTACTGTTTAAATTTGTGTGGGTCTTACAGTGTCTTCTTTTTCTGCTATATATgctttt-aaatatcaaaacata-CTTA-GGAACAAAGTTCTGGTTACATATCA---CTTCAGAGCGACCAGATTGTCAAAA----------------------------CATATAAGCTATCAGCAGATAATCAAAAGTGAGGTGATTTTTTAg---------------------------aaaatca-----taattttcttttcttgaatc---------------------------aCATATCACTAACAGTATT------------GTAAATGTAGATGTAATTTGGAGATAGTTTCATAGAGAATTTTCAACAGTGACAGTTGTCAAGTATTTTATCAAAGTTGCTTGCAAATAGTTTAATCACTATGAGCACATGTC--TAAATTATGACAACAAATTGAATCAGCATTCTGAGTTTGTAGATAGATAAATAGCATTAA---TACTTGATAATTTAATGTTGTGTGTGGGTTTTTGTAGGTGTGAAACTTGTGGTACAGAAGAAGCAAAGTACAGATGTCCACGTTGTATGCGATATTCTTGCAGGTATTCATGCGACTTTCTACCTTGCTACCTATATCTGTATGctttttgcttcaaaataaaaaaaattctcttctttgtttcttcagcTTGCCTTGTGTGAAGAAACACAAAGCAGAACTGACGTGTAATGGAGTTCGAGATAAAACTGCTTATGTTTCACTACaacagttcacagaaatgaaTCTCCTAAGCGGTAAGCCATTTAATGCTCAGCAGATTAATGCTTCCCAGCAACTGATA-TAtatcacttgtttatttttttattttgaaaattttagattATCGATTTTTGGAAGATGTGGCAAGAACAGCTGACCATATTTCTAGAGATGCTCTTTTGAAAAAGCCAATAAGCAATAAACATGTAAGTATTG----TAATTTCTCCCAATT-aggtcatttcttttttgtttgtttgtttgtttttcgttttgttttgttttggttttgcaaCTTAACAGTGGTCA---GAGGCCCTTCTAAATA--------CAATCATGGGTGGGAGAGATAAGAGATA----AATGGGAGA---AAGCTGTATACAGGaagaagtataattttaaatagaattaagTGCATATAGAAAATGAAGAAGGTTCATGGGATTAGAAGAATGAAAATGGGTTTCCTGTGGAA-ATG--TTGC-CAGAGGTTTGTTTTCAATACAGTGGTTAGGAGAAGCTCCTCAGAGAAATGTTATTTAAGTAACCATatgaacaacaggaaaaaaaaacttaacaagCAAACATTTGGAGGAAGACTATTCCATGGAGAGACAAAAGTAAAAG

a score=13217
s chr3           145582413 529 + 160039680 CATATGTTAGAAACAGGTG-TCAGTATATCCCATTTTGTACCTTCTTTGTATACTATT--ATCTGAATATGAATTGTAAAGCATTCTGAAATTAACTTTTATTTGGTTTTGTTGTTAGCTGTTCTTTATGAAGAATCGTGCCCGAAAGCAAGGCATTTACTTGAGGCTTCTACCCAATGGATTTAGCAAGAGAAAAGAGAATTCAACAGTTTTTGACCATAGGTAGGTGTCTCACTT----------TTACTGTATGTATAGCTGTCATAATTTGATAAGGGACAACCTATAAGGTTTGGTTTGCTTTAGAACATTG-TAAACAAACGTCAGATCTGTAAACTGTTCCTGGATGACAACAGAAA-CTGATAATTGCATGTCCTGTGACT-----------GGTGTGAATGTCCAAGAACTTGTATGTTGTCCTTGGAGAAGCTTCTCAAATGTTAATGTACATAACAAACCAG-TAAATATCCT--TGTGATTTCATCTCAGTGAGTTGGAATGTGATAACATGTATTTCTGACAGTGCCTC-AACAATATTTGTGGCT
s HiC_scaffold_1 131959725 538 + 233722169 CATTTGTGAAACATAAGTACTCAGTAAATCTTA------ACTATTATTGAATatgattttacttatttctgAATTGTAAGGCATT-TAAGATTAATTTATCTCTTATTTTATT---AgatgtattttatgaaaaatcGTGCCCGAAGGCAAGGTATTAACTTAAAACTTCTACCCAATGGATTCACTAAGAGGAAAGAGAATTCAACATTTTTTGATAAGAGGTATGTTTCTAAATTAGTATaccaggttttgtttttgtttctgt-----tttaattaagAACATTCCTTAAAGTTTGGTTTGTTGGATAGGATTGCTACACAAA-GTATGAATTCTAAACTGTGGCAGAATGACAAGATAACTTTGGTAGTTGCAAGCCATATGAGTAATAAAATTGGGATATGAA-ATACATGTATTGTCTTGATActctttg---aatttctcaaatattAGTGCATATAATAAATCATCTAGGTTTCATAATATGACTTAATTTCAGTAAGTCTGGCTCAGA-GTTGTCTATTTCTAATGAGCCCTCTAGTAATGTTAGTCGTT

a score=18538
s chr3           145583717 751 + 160039680 GCTTCACCTTCCTCTGCCCCACCCAGTT-----CTAGACAACCCCTAAGCCCTGTACTTATGGTCAGTAAGTACTTATTGTTCTTGTACCTCCTACTTAGAACTG-TGAGTCCTAAACTTCTTAATCCATCTTTTGGACTTGGggtttggtttggtttggtttTTTGCTTTCTACAGATGTATATATCATCTTTATAGAACTTATAGATCATAGAGACATGCCCGTTGTCAAAATGTGAATTAGTAT---TTAAGTGTTCCGGTTCTGTTTTAGAAGTTAGCCACTAGGTGTCCCTCTTGTAAAGACTTAACAAACATTTTACAAATTTAAAAA---CATTTTATTCCTTAGATACAATTATAGCTTTCTTGTTATATCGT-GTAACATGCCCATCTACTTGTTGGTTAACA-TAATTGCAATGATTTCCTTAAATAGTTGTGGCAATGCATTTCTTTAAACACAGGATTGTTTTTAACATGGTATCTATGTAAGTG---TAGGTTTGTACATTCCTATAGCTTCGCTTTAGAAAGGAGCAAGGATAAGTGAAACGGTGAGTCTTGCAGTTG------TGGAGAACAGGTGGGCTTTACAGTGAGATTCAGAGGGCAATATACTACAGACT-----CAAAGTTGT------GCTGAAATGTT--GAATTCTGCTATTCCTTTTCCA-TGTGGCTTTTAGATG---TTACAGAGGAATTTCAGAGTGACTGTGGGGCCTTCTAAAAACACTGGGAAGAAGTAGAAGCCTGATTGTTCCCCTGCCCGGCCTCT
s HiC_scaffold_1 131969943 742 + 233722169 gttttgccttccttttttcc--ccagtttgtctCCAAACAAACTCAGTGTCCAGTTCTTCTG-----------CTCTCTGTTCTTCCACTGTCAGGTTAGAACTGCTGACCTTTTAACTTCTCAATCCACCCTTT--------------------------TTCCTGGGTTCTCCAACTCTGTATG-CATCTCTTTTGTGCTTACAAAGTTAAGAACTATGTATGTTT----ATTACTAAACAGTATGAATTAAGAGCTCTAGTCCTGTTTTAGAAGCTAGCCACTAGATGTCCCTcttgtaaagaaataacaaaccttttacaaattgaaaaaacttattttattcttt--atataattAAAGCATTCTAATTATATTGCAATGAAATATCCATCAATCCCTTTATTAATGTTAGTAGCACTTTTTTCCTTAGTTAA-TATAATAATCCACTTTGTAAAGTaaagaatttttataaacatGGTATCTCTATAAGTGGTACAAATTTGTGCTTTTCTGCAAATGGACTTTAGAGAAgagcaaagggaa--aaaatgatGGGTTTAGCAGTTGGGTTCATAAAGAGACAAAGGGATTTACAGTGAGGTTTGGGAGATTACATAATAGGTACTCAGTACAAACTTGTTGACTAATTGAAATGTTTATAGTTCTGTGGGTTTTTTGCTATTACAGCTTTGATATAGTTTGATGGAAGGATTTTAGAACAACAGCAAGGACTTAGGAAAATTGTGTGAAAGAATAGAAGCCTAATGATTCCCTTGTTGAGCCTTT

a score=7533
s chr3           145586546 401 + 160039680 AAAGGCCTAGGG----ACTTTAAGACAGTGGAGGTAG-TTTGTGTGTCTAGAGGGCAGGGTAGTGAGTCCTGGTGGGCTGCGG--------------ACAAGCCTGCCGTGCTACACCAGGGAT--------GAGTCATGGTGGGCTGCGGACAAGCCTGCCATGCTACACCGGGGAGTTTATTGAGGTAAACCCCTTGGACAGGCGA---TCTGTAGTCTGCCCCTCCTGATTTCCTGCTG---------------------------------ATTCCTAGGGTGTCTCCCTCTTTGGCGTCCCCTCACTATCTGTGCACATGTACAC-ACAGCTCATCTGCTCTCCATCCTGTCTCTCGTGCCTGAGTTCCTGTAGTACTCATTTTCTCCACAGTTAACATGAAACAGATGTCGGCATTTAATACCA-----CTTTTTGGTATGCATATATCTGCTCATCTTCCTGT
s HiC_scaffold_1 131971895 442 + 233722169 AGAAGCATAGAGTAGCAATTCAGGACAGCCTAAGGAGATTTGCATTTCTAGAATCTAGAATGGTg----ttggtgagtgatgggaatgaaAATGGACAGAGGCCTGCTGTGCCATGCCAGGAGTTTTAGGTAGAGTTGTACTATGATCAGAAAATCCTTGTGTTCCTACA----------------AGTGATCCACATCCAAATGTGAGTCTTTATAatctattttctttgatttcctaaTGTATTCAACAAAATGGACCCACGCTGTTCTTTAAAATCCGGGAATGTCTTCTCTATT------TCCTAGCCATCTGTGAAAGTACACATGATAGCTCATCT-TTGCCCATC-TGTCTCCTTTGACTGAGTTCCTATAGTGCATATTTTCTGCACAGTTAATATGAAGCAGATGCTGATATTTAATACTGGTATTCATTTTTGTATGCATTTATCTGCTGTTCTTTCtat

a score=32374
s chr3           145594157 2195 + 160039680 AAACCTAACATGCTTCACT-GCAGGAAAATTGGGATCAGCTTTAAAGCCTGAC--TGTGGCTCTGGCTGAGTGAACA-GAACACTGGCTGGCTTGCGGCCTC----CTGAGTGTTCCTCTGGTGT----ATTTCTCTGAGGTTCATGCATGTTTCAGTTTTAAGTTGTTAAAGTTTGAACACAGGTGTACATTAAAAGCAGCTTCATATTTTT-ATAAGTGACTTGTAAGGAGGTTTTCTAGATTTTTA-AAGACTTTAATCACATGTTCCTAGAAAGTCTGTCTGTGCTTTTCTTCTGCAAAAACTTACCATGAAAAAAAAATTCTATGCTATATTTTGCCAAGAGTAAAATAAAGGGTCCTTGCCAGTATTTATACAAAA---------TTTAGTGGTTTTAAGATAACAC--TTAGTAGCA-ATTATTAATAATAACGTAACTACTTTTCTTCTCTGTTGGAAAGAGTACCAGATGATAAAACTATTAATGAAATTCTAAAGCCTTACATCGATCCTGAAGAGTCTGACCCTGTGATCCGTCAGAGGTAGGTTTCAAACGTCTCGTAGCTTTCTGACAAGATTTAAACTGTTGACTTAAATGTTGTGTGAgtgtgcatgtgtgcacacgcgtgctgcagaacacacacagagtatagaaactgtggagaacgggctctccttccaccatgtgcctctcagagttggaacttagaccaccaggcttcacaggcatctttacctgctgttcatcttgctggATGCAAAGGTTAACGTATTTTTGAGTGTGTATTTATTATAGGAAATTGTGGCTGTATTTAAGTATGTTGTTGGACTTTGCTGAGGTTCAGTCACTGTAAAACTAGTGCCATTTTTTTCTACCACAGATGCTCCTCAAGTAGGCAGGAATGGTGTCAATTCATTTAACTGTTGCAGCA------------GCTCACAcccattttacaggtggagacactgaggcttaagtaggttcaataacctcctgtgaccaataagcaaggaagctgagattcaggcccC-----TACAGGACTGAAGTCTACAGTCTCAG-CCTTAGACCAGACTGCC-TTCACATTGAACTAAAAATTCTAAAACTTAAAGCTTTTCTAGTAACTGTGAAAGACAGGAAATTATTTTTCAGTCAAGTCCTCAAAGAACTAAACAAGGTTACACTTTGCC-----TCTAGAAGTACAGCATGGTCAAAAGTGGGTAGCACAGCTTAATGGAAAGTCTC--TCCTGGATATGTGAGTT-AAGTAGCTACCTGCCTGCCTC-TGAACCGTGTGATC-AGAGCCAACTGCTTCACACCATG--CTTTAAGTTCCCCATGAGTTATACTAGAATAA-------TGCTAGA-----------TTAAAAAGTCAGGAAGCATGAAAGAGAGAAGTATAAAGTCTCAGGGCCTGGTGTGCTCACGGCAGCGCGCTGGCAGGAAGCTTGGTGGTGGGT-AGTTTCCAGGCTGTGCTCCCCGGCAGGAAACGAG----------------------AGGTGGGGGCCTCTTTTTGAGA------TGGGAGTGCTTGTTTGATTCCTAGAG---------GGTTGGAGTTTATACCTGGTGGATCCT------------------GTTGTCTCTCACTATTGAAGA------AAACAGTGCCAGGCAGACTCCTGCAAGCCAT--GCAGGAGCTGGGCCTTGTCTTTGGGACAACTCTGACAGTTAAAGCT-----TGACTAATTGATAATCTGGTTATTATCGTTGCTCAGATAGTTGGCATT--GATGAAGAGCGTTTGCTACTAAATTGAAGGCAGT-----------ATGGTGGTAAGCAGCTGACT-GTTTGCTGATACAAGTATGTTTTTTAGCATATGTACTGACAAAACAAGACTTGAATTTCAGATGTGTAACCAGCTCTGGTTCGGTATTGCTTTCACA---TCTTGCTTAGAAACCATCTTT---TTCTCTCTCTCCTCGTG----GATAGCTGAATTATGAACATTGGCTGCTCATAGATGC-------TCAGACTATCTGGAAATAGATTAAAAATAACTTTTTCTTCCTCTACTGCATTG-TTTTCTTCCAGATTGAAAGCTTACGCACAGTCACAGACTGGGGTCCAAATTTTAATGAGGGTCGAAAATATGCAGCAAAATATGATAAGGTAAAATTGCTTCCGTCATTTTCTCTGTG-------TTTAATTAACTGGCTTGATTAGGTGACGTAGCTAACTATTATA-----TTAATTGTTTTGCTGTGAACAAAAAAATCTCGAAATCTAAACTTACC-------ACTTTCAAGTTAAAATACTAAAATAGTCGCAC
s HiC_scaffold_1 131980891 1973 + 233722169 aaatcttaaATACTTCATTTACAGGGAAATTAATATTAACTCTTTAACCTGATATTATGATTTAGAATGAATAAACTTGAACACAATAAAATCTGAGACCTTTCTTCagatttgtcttgttttgtttttatttttataaatttcaaatatatttca---tcaTGTCCTC-----TTCAGCACAGGTGTGTGTTAAAAGAGGCTTCATATTTTTTATAGTTGATATATTCagaacttttcaaaatttttttaaaatcttaa----gtgTACCTAAGAAGTCTTTTTGAGCTT----------------------GAAAGGA--------TGTTACAGTTTGCCAAGAGTAAGAGA---TGTTTGTTCAGTTATTTAAATCAAAAAAGCCACATTTAATAATTCTAAGTTAATACCTTTAGTAGCATAGTataaataataat--------cttttttctctgttgGAAAGAGTACCAGATGATAAAACTATTAATGAAATTCTAAAACCTTACATTGATCCGGAAAAGTCTGATCCTGTAATTCGTCAAAGGTATGTCTCAAAAATCTTGTAACTGTCTG--AAGAtcca--------attaaaatgtt-----------------------------------------------------------------------------------------------------------------------------------------------------------------------aaatatttttagctACATATTTATTATGGAA-------------------------------------------------------------------------------------------------------AGCAGTGCTAATTCATTTAATCATCACAGTATGGTAGACTTATTATTATGCCCATgttacagatgtggaaactgaccTTTATAGTGGTTAAATAACCTTATATAACTTATAAAAAGGAGAGCTGGAATTCAAACCCAAGCAGTCCAGAGTCAAAGTCTGCCCTCTTAACCCTTAAACTAAACTGCCTTTCAAGttgaaataaaaa--ctggaaaGTAAGACTTTCCAAGTAGCTGTTAAAGACAGGAAATCCTCTTTCAGCCAAGTCTTCATAGAACTAAGTAAAG-TACATTCTACCTCCTGTCCAGAAATACAGCATGGACAAAAGTGGTTAACATAGCATAGTGGAAAATTTCAGTCATGGGTATATGAATTAAAATAGCTAGCTCTGTCCCTTATTAACTATTTGATCAAGAGTAAATTACTTAACTTCTTGGCCTTTCATAGTTCCATCAGTGAAATGAGAATGATAGTACCTACTAGATAgagttgttttttgaaatttaaca-----GAAATAGCACATTAAAAGTTCCTA-----------GTCCAAAGCAGCAGATAAAAAGAAGTGTTATTGAAGTATGAGTTATTAGG----GTTTCTGGACAGAAACCCAGTTGACTCTACTGTATTTTCACCAAATGG-----TACTTATTAGAGCTATCTATGAATGCTTGTTTTGGTTTCAGAGTAATctggtatttaaaatttaaactctgTGGATTCTAAATCCTATCCAGTTCTAGTTAAATCTCATTTTTCAACATTCTATAAGTCGTATTGCCTAGACTGGTCCAACCCCTTGTCAGAAATCAAATTGTACCTTTGAGACAGCTATAATAATTGAATTTCTTTCCTTCCAGCTGATAATCTTGGTGTTATTATTAGTTATACACTTGGCAGTAAGATAAAAATC-CCAGTCACTGATttggatgtatttttttaaaataaatatataaaatagctgATTAATTAGCTGAAGTAGTTTTTTTCTTaagaa---gaacagagaaaagaaa----------------------------------ggtaaTTCTTTTTCAGATCCTTGATTAGaaaatatctttaccttttttcaATGCTTGTGTACATacatttaagtttt----attggttgtttataaatgtctttttATAAGACTATCTTCAAATGTACTAAAATCAA-TTTTGCTTATTTCagtataatgcttttatttcagGTTGAAAACCTACATTCGTTCTCAGACCAGCATCCAGATTTTAATGAAGGTTGAAAATATGCAGCAAAATTTAGTAAGGTAAAATTGGTTCCTTcgtcatttctttaaatattttctaattttataatataattgagTTGCTTGCTTAAT--TTATAGTTAGTCTATTGTCTAGCTGCCTACA-----------AAACCTAGACCtaccaaaaaaaaccctcaaatgaaaattttaaaataatcacac

a score=40573
s chr3           145600438 3850 + 160039680 [encoded data, 4543 characters]
s HiC_scaffold_1 131996786 3967 + 233722169 [encoded data, 4543 characters]

a score=51387
s chr3           145606470 1355 + 160039680 ACTCTTCTCCATTTC------TCCCAAAACGTTGGC-ATCTGGTCTTTTTCATTGTCTCCTGTGAATTAGCCACGGCTGAACTAAGTACCACTGAGAGCTATCGCAGCAGTCTTGTGACAGCATGGCTGTCCCACACTGCCTGGTCAGTGGGCCCACATGGAAAGGACACAAACATGCCCAAATAACTG--GACGACTGTCGTGTTGGCAT---ATTGAGCATCAGAAGCCTCCTGTGCTTGGCCTGCTGGTGAATCCAGCTATAACTACTGGGCCCTCAGACAGGACAGGCTCGAGGGGTAGAGTTTGTGGGCGCGATTGCAGCTATGGGAGGTAGGG-----------CCTTTTGGAATCCCTAGGAAAGGCTTCAGGAACAGAAATCAAATGGTTGAAGGAAATCCATGAAGCTAGCAGGGCAGACACGGAAG--GTCTTGGAGACCATATGAGTGTTCATTCCATAGACTAGAGACACGTGTTCAT-CTCTGACATAAGCACC-----------AACTCGAG-----------------------------------------------------------------AAGGTTTTATTTTTAAAAGCAAGCTTCCTATCTCTCTTAGGAGAGGCAGAGACGTTTACACGGCGATTTCACATTTTTATTTCAGAAAACTCAAGTTTCTCCTGGGTTTCTGTTTAGCACTCTAG-TTATTTTTGCTGTTAGAAGAAACTGTCACAATCTACCTCTTGGTATCTTGATTC--TTTTGGCTCCTTGAACATC-GGTTCTGGTTTAAGTCCATATGGTATAAATCTGTGGTGCAGAGACAGTCCCTAAAGCCCAGTAACTTTTTATTTT-CCTAGAGCCCTGTGGTCCTCCATTTGACTGGT--ACTCTGTGTTCCTAAAGAAAAA----AGAATTCAGTTTCTGTGTTTTGAAGTATGGGGGGCTGGCTAACCAGGCACTGGGATTCTCTGCTTTTAGAACTTTCACCACTGTGAGAGACGGTGGTGATCTTTCCATGTCCCTGACAGATTGGAAGGTGGTTTT-CAAGTTCTCCACTTCAGATCTCTCCCTGGAAAGCTTGGTCAGTTGTTCAGCCAACATCCTTGGCCTCTGCAGCTGTTGCAGCTTAGAAGCCTGTAATAGTTTTCACAACATTTGGACCCTCACAGACAGAACTTCTAAGCACT-GAGATGGAAAAGTGGAGG----------GGCAAAGAAA--GTGGGTATCCAGTTTTCCAGGTAATAGACTCCAT---AAGGAAGCTACTG--TGTGGCTTGACCCATGTGGACAGTCAAGGGGAAGGAATGACCCAGGTGTTTCTTCATTGCTTTCCTAGGTGGCAAGGAGGGCAGCTGTGACCTTTGAGTTGATTCTTTTTTT------------------CCCTGACCAGCTTGTGTG-TCCTTAGGAGTGAGAGAGGAAGCAAGTTAGATACCAAGTCCTGTCAAAAGTGTTTT
s HiC_scaffold_1 132006513 1445 + 233722169 ACTCCTGTTTCTTTCAGTGGATTCCATGATGTTAGCCATCAAGTCTTTTTCTTTGTCCACTGAGAATTATATACTACTGACCTCAACACTTCTCAAAGCTGTTGGGACAGACCTAAGACAGGGTAACTATCCAGGACTGCTTGGTTAAGGAGCCCATATATAAAGGAAGTAAGAATGCAAAAATAACTGTTGGCAGCTGTCACATTGACATTATATTGAACTGTAGAAGGAACATGTGCCCAGCATGCTGGTGACTCCAACCTT---------GCCTCTAGACAAGACAGACTTGGAGGG--GAACTAGT-------ACAACAGC-ATGAAGAGAAGCGTAATTTTGTAACCTGTTGGAAACTTTGGGAAGAACTTCAGAAGTGGAAATGGGATAGTTGGAGGAAATCCATTAAAACACATAAGCAGACAGAGGAGAGGCCTTCAAAA--ACGTGAATCTTAATTTCATGGGACAGAGGCAAGTACTCATGCTTTGAATTATACaaccaagaagaagaaaattgagccatatgattttttttttaagttcacttTAATAATACAGAATGGCAAAGTTCATTGTGgcaccatgtgattttttttttaaagggaagttTCCTATCTAGAT---AGGAGGTAGAGAATACTAAATGGTGGTTTCTC-TTATTAGTTCTGAAAACTTCA-TTTCTCCCAGGTTTCTGCTAAACACTCTAGGTTATTTTTACTGTTAGAAGAAATTGTCACACATCACCTCTTGgtattgtgatttcttttttgctCCTTGAACATTTGATTCTAGTTTAAGTCCATATGGTATAAATCTGTGGTGCAAAGACAGTCCCTAAAGCCCAATAACTTCTTATTTTTCCCAGAGCCCTGTAGTCCTGC-TTCGAGTGTTCTGCTCTCTGATCCTTAAGGAAAACACAAGAGTTCAATCTCTGTGTTTTGAAATATCAGAGTCTAGTTAACGAGACACCGTGATACTGTGCT--------------------AAAAGACAGCAAC--TTTTTCCATGTTCCTGACAAACTGGACAGTGTTTTTTCAAATTCTCTGCTTCAGATCTCTGCCTGGAAAGGTTGGTCAGTTGTTCAGCCAACATCCTTGGCCTCTGTACCTATTGCAGCTTAAAAGCCTGTAATAGTTTCTGCCACATTTGGACCCTCACAAACAAAACTTCTAAGCACTGGAAATGGAAAATTTGAGGTGGTCAAGGAAGCCAAGAAAGTGTGGGTATCCAGTCTTCCAGGTAATGGACTCTGTAAGAAGGAAGCTACTGTTTGTAGC-TGACCTGTGTAGACAGTTGAAGAGGGAGAATAATCCAGAtgttcttttcttgctttcttaggT---------GGCAGTGGTGACGTTtgatttggtatttttttttaagcagttCTCTTTTTCCCCTGACCAACTTGCATATTCCttaaga--aaaagggaaaacaaattaattatttaaCCCGgcaaaaaatacttt

a score=113258
s chr3           145610777 5853 + 160039680 [encoded data, 6858 characters]
s HiC_scaffold_1 132011169 6321 + 233722169 [encoded data, 6858 characters]

a score=11663
s chr3           145616972 323 + 160039680 AGCCCTCCCCTGGCTACAGTGCGCATTAAGCCCCACTACAGTGCAAATTACTTTTCTGATCACTTTCTTTAGC--------------------TCTGCCTCCTTTAGTGAGCATTTAATTTGCTCTCCTGTAGAAACTAAAGCCAGATGCCACTGTGTCTGATGAACGGGATGACTCTGACGTGGGTGTTTACAGACAGTAATTAGAACCTCTTCAGTTCACGGAAATGTCACAACGCCCATCAGGTGCTTACTTTTTATGCTGCCTTGTTTGGACAGAA--------------TTCCAAAACATA-----GTGCATTAAATATACAT----TTTAAAATGAGAAAATAGAGATAAAAGAAAAATA
s HiC_scaffold_1 132020394 365 + 233722169 AGGCTTTCCATGGCCCGTGTGGAAATCAACCCCTAAGGCAGATGCAATCCcatatttgattgtttttattggtcCCACCCATTATGAATACCTTCTCTCTTCATCCATGAACATTTAATTTGCCATCTTGTTTTGGCTAAAGCAAGATTCCACACTGTTTAATGAACTTAATGATTCTGACGTGGGTGTCTACAGACAGTAACTAGAAACTCTTTATTTCATTGAAATGCCATAACACCCACTGCATGCCTGCCTTTCATGCTGCCTTGTTTGGGCAGAAagtgtgtttgcttgtttgattATTTATATTTGTGCTTCAAA-ACACCTagtatgtaaaatgaaaaaatggggataaaagaaaaata

a score=30827
s chr3           145618299 1240 + 160039680 TTCTTGGTTC-TTTGAGATGTCCTAGAGCCACTGTCGTGTGGTTCCAGGTCGAACTGTGGTCATTTTGGAGACACTTGTGTTTCCACAGTGATGTATGTCAGCAACCACAAAGCAAGCTGCCTGTGAGCTCATGTCAATCTGATACCCTGGGTTTATTTGCTCCTCGGGTTTCACTTTCGCTTATGTAATGGGCTGTGACATTTCTCAGTCATTACCTCATGCTGGGACCTTCTTTTCCTTTGTCTCTCCCTGATGACGCGTCCTGTTCTTGCCTCTACTCCCTTGGACCTCTGGGCTACAGTGTTCTCAGCTGGTAGGC-GGAGTGGGTGGAAACTAGATTGTGTGGCCACTTCTCCGCCCTTCCCCAGACAAGGG---CCGGGGTTTGTCACAG--------------TGCAATCTCTTGACATCCCTCAGAAACACAAT-GCTAACAAGTATACCAACAACCACAAGTATCC--ACTAAATAGGCCTGGAGGAAGGAACCCAGGCTGCACGTCAGCGCCAGCCAGGGAGTCAAGCAATCTTTTGAACTCTTAACTAA--ACTGACATTTTCCCACAGTGTCTCTAG-----CTCTAGATGGCTACTGTCCCCTGGGTGTTGTATACCTGACCACATCTAC------------TCTTAAAGGAAATCTAAGCCTC-AAAATGTGAGCAGTCTTTGACTTGAGAATCTTCTGCCTGGGCTCATCC--ACTGTTCTATGTCGCTGTCTGCTTG-------------------AAGGTTGGACACG---------GAGCACTTGCTTCGCCCTCCCATGCCACTTCTGACCACGTGTGACTCTACTGAGTCCCCTG----TTGGCAAATGG----CCAATCTTTACCCATTTGCTCAATCAAAGAGGAGGAGGAGGAAGAAGGCGATTTCTTGCTTTCACGTGccccttctttcagctctcacatctacctcagaca--tggtctttcccccagaa------tgtactaaaagcatcc----agttgcttccatatacctggctttcatcatatagtccaagctgctgctagatcttcacgcgtg-------atatcgccaaccagcctccccacgtcccttcacg-cctcactacagtccattaccaaccagtaggcagggtgaccatccacagcactccagagcctacaactccttcagctcttcagcatccttcagCTCCCAGAAAAGGGTAAAAGGCCAGTCCCCCTGCCCACCTGCTAGACCGCATCCCCTTTGCCTTCCAAGG---TCACGGAGTTGCAGACTCT--CTTCTGGCCTATTTTCCCTTCCTCACAAGCTCC
s HiC_scaffold_1 132021328 1288 + 233722169 TCCTTGATTCCTTTGGAACTTCCTAAAGCTTCCCTCATGTGGTTCCAACC----------TCATTTTGGACATGATTTTGTTTCCACAGTGATGTATTTCAGCAACCACAGAATGAGTTTCTTGTATTTTCATATCAATTTGATaccctttgtttatttattcttcaggTTTCACTTTCGCTTATGTAATGGACTATGGCATTTTTTGGTCATTACCTCATGCTggga-----tttccttttgtttgtacCTCTTGATGCATCATATTCTTGACATTACTCTCTTGGATAGCTTGGATACAATGCTCTCAGCTGGTGGGCGGGAGTGGGTGGGAGCCAGATTACATGATGACTTCCCCACCCTTCCCCACACAAAAGCCTCCTGGTTTTGTCACCAAGTCACTTTCTATCTTCAGTCTTTTGGCATCCCTCAGGAGCACATTAGCTTAAAACTACAGCAGCTATCAAAAGCATCAGGGTTAGATAGTCCCag----aagaaccctggctccctttCTGAGTTGGACAAGGTACTAAGCAGGCTTCTGAACTCAGAAACTGTTCCTGTCCTTTTCCCACAGACTGGCTAGACTGTCCCACAGT-----CTGTCCCCTGTGT-CTGTACACATGTCCAACCCTATACTATAGACAGGTCTTGAAGGAAACACATGTTTCAAAAATATGAACAGTCCGTCACTTGGGGCTTATTT-CCCGAAGTCCTCCAAATTCTTATATACTGCTATCTACTTGGACATCTAAAAGACATCTCAAGGTT-AACATGGCTAAACTAGAATGGCTGGTTCATGTTCCCATACCACTCTCACCCAA--GTGACTCTTCTGACTCTTCTGCATCTTAGAAGAAAGAGCATCACTCTTCATTCAGTTG-TCAATCCAAAACAAAAGGAATTA----------TTCTtgatccttcctttcttttccttcacctTTCACAGCTACTTCCAGTAGCCTGTTTCTACTTCAAAAACACTGTGTATCAAAGGCCACCTACTATATATCTCCATACTCCTGGTTATCA--AGCTAGTCCAGAATGCTGTTATCTCTT---GTCTGAAAACCAAAATCACCAGGTAGATTCTCTACTTTCATTCCTGACCCCACTACAATCCATTACTGCAGAGTA-CCAAGGAGACGGCACACATCAGTCCTGTGCCTTAAACCCTCTGG------TGACTTGCTACTgctctaagaaaa--acaaaaatcca-ttaCTTTGATTGGCTCTCAGACCTCATCTCAGATCACTTGCACATCACTCACTGAG--GAAGCTCCTGACCTATGGTCTTTTTTTAATTCCTCAAAAACACC

a score=63738
s chr3           145621289 2802 + 160039680 TTTAGTATTAATTAGTGATCAATCTCTTCGGTGATTCATCGGCTAAAGCAATATGTTATTGACATCATGGCTTTGGCACTTCATTTTCTATTTCTGTATAGCTCTCAAAACACTTTTACCTCTATTGACTCAA--CTTATCAGCTCATCTGCCCTCAGAAGGAGACAGTGCAAGCGCTTTGGCTTTATTGATGAATGTGAAGTTTCCTGAGGTAAGAACAGATCAGCACTGGGAAAGCCCAAGCATGAGCTGTGTACAAGGAATGTGTGAGGAAAAGCCAGACGAGAAGCCAATGGTGGGCCTGCAGGAATCTGTGGAGAGGAAGTGATGGCAG--------GTGTTCAATCCTGACTGATCTCTTCTGTTCCAGCCACATCATCAGGCGTCTGAGAGTGGGGATGAGGTGTCCGTGTGACTGTGGGTTCATCATCTCACC-TGCAGCC-TTACTCAGCACTCAGAC-TGGGCTCCCTCTC-TGAGATGCCCACCACGCTttg---tcagtcttcctcatcagactgcagactccctgagagcaggtctcctttttccgctgctgagttattctagcatatcacat----atgctcc--acacgtggaaagtgctcaacattgatttagtaaatgaTAAGTGACTG----ACTTGGGCATAAAAACGGAGAAGTCAGGAGAAGCAAGGCCAGTG---------TGAGAG-----------ATTTAGCTATAA-------ACCCTAAGAGAGGAAGCAGGAGGAAGAAGTAACAGTGAGCCTTATGCCTGTAAATGGGGCATTCAGTAGACACACGTTTGATCGTGAAGGA--------------TTTTAGGAACCAAAGGAga----gtctagcaagatggctcactgggtaaagacactcatccacaaggctagtgaactgcatttggc---cccagaaagagaaaactgaccc--cccataatttgtcttttaacttccatgtatgtacttcagctgtgtccccacccccacCCCATCAATAAGTCAGACTGTAATAAAAATTTTAGAAAAATCAG-AGATCTTCCCCGGTGACTTT-GTTATGACTT------TCCATTTATTTAGCCCAATTTTATTTTCAAACATAGCGCAAAA-TGAACTTTAGCCTTGGTTTTA-CCAACAGTCCGCAAACCCCTGAGAGCTGAGGCGGCCCTCAGCAGGGCTATTTATCCATGAGATTTCACACCAGGG----AGGGTGGCTAGCCCTCAGTTCTAGTGACTCTTAGCAGCAACATACATTTCTGGACTTGCCCCTGGGGCAAACTTACCCTTTTCTTCTTCTACAACTT-CTTTTCCTTTTCCCTTGCCCAGGGTCTGCTTCAGTGTATCTGTCATGGACCAC-AAGCCCCAGCCAATGAAATGCAGGTATCTTTTTTTGTCAGGAGCCTCTCACTGTGGGGCTATAATTAGCCCTGAGAACCATGTCACTGGATGGGCAACCCAAC-----GCATACAAAAACAAGATGTGC----CCACCCTGTCTTTAAAGAGAGAGTATAGCACTTAAAACCTGAATCCTCAgctgcggatgtggctcagtgggagaatgcttggcctagaatcacaagatgctggatttatgccctagtactgcaaaGTTCATTTCAAAAGTAAAAACGTAGATCCTTGGTTCAGGTAGTGTCTTTGAGACCAACCGGAAGGAGTGATGGCTGTAGGTCCCAG--GGCAGGCAGCTGGCAGCTGTAGCTCATCTCATCTCAGATGTGTCTCCTTACCCAACTGTGTAAATGACCTAACCGTGCACAG-CAGTGGCGCTTGTGCAGGGAAAATAATACAGTAATACAAATATTCAAACCAAATTGGAAAAGCAAAGAAAGAAGGAGCCAGAAGACATTAGATCATTGCCGCTGCGACCTGGCCCAGACAGCATCTGGGCGTGCATCCTCTGTCCAGCCTTTGTCCACACAACATCCGTCATGCTTCACTGCGTGTCTAGAATAATAGCGCCTG---TCTACACAGAACCCTTTGTGTGGCTGCGCTTTGAGGAACAAGGTCTCTTACAGTGTCCCTTGAGGAGGAGCAGGGACTCCCTGGTAGGAATGTTTTAATAGGCTTCCGGGACGAAAGGGAGTCCTTCTCCCTCTGAAGGGATGGGCGGAGTAGTGGTGTACCCATTGGCCAGTGTATATGTTTTCATCGTGTGACCAGGGCGAGCTGTGCTCATGTTCCTTCTTCACTGGGTCATTTCCACTTTAGTTCTGAAAGC-AAGAACAATTGATTAAACAAAGAGCCTTCCTGACTGAACCTTGGATCCCCCCTCTGGGTTtggacaaggaagtag-ggaagtgttttccttcctccccatctgcgt--cccaccattGGTTAAAGTCAGCCTGA--GTCTGCAGA--------ATCCCTGCTGGCTCATCCTTAGCAATGTTTTCCCCCCACTGGCCAACTCCAAGCATCCTCTGGGA-AGTCAGTCCTGCA-AAGGACCCGAGT-GGACCCTCAGCCCTGCCACTGCCAACTCTTGGACAGGACAGGTACCCAGCTAAAGCATCGGTGTTGGCTCCTGAATGTCTTAAGCGATAACACCAACCCTGTCTGTCTCCTGGGTGTGAGAGCAGGCTGTGTCATAAAGTGGGTTTCCCACACCCGGCATGGAGCCAAGCATTCCAGAGAGAGCAAGTCTTCTTGCAATCAACTGACAGCTGTCCTTCAGCACCTTTG----TGACCATGGGTAACACCAGCCCAAGTTCAGTGGTTAAGCAGCCAAGGACCATATTAGGTGA-----------------TCCATGGGTGGAATGGCGAA--------------------CCTCCTCCCCTTCAGCTAGTGAGTGCTCCCCTTTCTGAGAACAGCTCTTCATTCCCCAGTGGCTTGAGAATTTCTTTATTTCGGTG
s HiC_scaffold_1 132023669 2676 + 233722169 TCCAGTAATGATTAGTGATTGACAGCTTGACTGATccatttattgaattattttgttgttttgataatGGCTTTGGTATTGAGTTTTGTATTGCTATCCAACTTTGAGAGCACATTCCCTTCTACCTAGTTAAAATTTAGCCATTAATCAGCC---AGATG----------------TCTGGCTTAAGTGATAAATGCAAA---TCCTGAGGTAGAAATAAATCGGTGCAAGAAAGGAGTGAACATGAACTATATACAA---CTGgatgaggaggaggcagagaaaacTGCAACTACAGGGCTTTGGAAAGCCTTGGAAAG-AAGTAGTGGCAGAAGGCTAGGCTTTTGTTCTTAACTGATCTCTG--GTTCCAACC-CATCATCAGCCATCTGAGAG---AACTTGGATAATCATTGCTCTGAGTGTTGGTCATCTCATCATTCAGCTATCACTCAGGGCTTGGACATGGATTTCCCCTCATATTATGCTCACCACATTCTGCCCTCAATGTTCCCTATTGTACTGTGAGTTCCCTGAGACCAGGTATTCTTTTTTC-------AATTGTTATAGC-TCTCACATCTAGATACTCTTGACATGTGGAAAGTGCACAGTATCTGTTCAACACATAATGAGTGAATGGGTGATTTGGAtaagaagaaagaga---caaaagaaacaatGCCATAGATTCAGACCtgagtgggcatggtggcacatacctgtaatcccaggactctgaagGTGGggtcaggagga-----ttgctgtgagttcaaggccagcc--tgggctataaagtaagttcaggaccagtc-tgaactacatagtgagacccttctctaaaattaaattaaattaaatttaaaaacatagatt-CAGATCTAAGGTAtcagcagagaaagccagcagAAAGCAATGAGAAGACCAAGACAGAGAGA--TGATTCTGCCCATAATGGGACATTCAA----------------TAAGCTGGAT---------------ATGGTCATGTGTGATTATGA--AGCATTTTAGAAG--TCAGCAGGCTTCCCCCAGTGACTCTAGTTGCAGCTTGTCATTCTCATTTGTTTAGCCCAACTTTATGTTCAGAgatagaacaaaaataaactttaaccTTGACTTTATCCAAAAGGCCGCAAATTCCAGATAGTTGAA-------TGAGCCAGATCAGTGACGTGTGCGGT---ACTGAAGGGTTGTAGGGTGATTTG---TGAAT----ATAATCATGAACAGCTACGCTCATTTCTGACC----CCTTGAAGGAaacttgccttttgtttttttcatacttttcttttccttctccctttcctcaGATCTGTTTCATCTGAACTTCCATAGACCAAGAAGCCACAGGCCACCAGAAAATAGTCTCCTCTTTTGTCTGGAGCATAATGATGTATGATTTGATCTGGCCCAAGGAGAAATATGACTAGACCAGCAAATCAACCAAAAACTGACAGAAACAAGATGTACTTACCCACCATGAC---AAAGAGCTGTTGTAGATCTTAAAATTTA-------------------------------------------CAGAATC----------------------------TGCATA-----------------------------------CAGGTATCATCTTTGAGACCGACAGGAAGGGAAACTGAACGCACATCCCAGAAGTGAGCCAGCTACCAGCTGTGGCTCATCTCACTTCTGAAGTGTCTCCTCACACAACTATGAAGATGACCTAATTGTGTATAGACAACAGCAATTGTACaaggaaaataatacagtaaTGCAAATACTCAAACCAAATTGGAAGAGCAAAGCAAGAAGGAGCCAGAAAACATTAGATCATTCGAATTGCAACCCAGCCAAGACAGCATCTGGG-----------TGTCCAGCTTTTGTTCACATACCATCCCTGATGCTTCTTTACATTTCTAGAATG-----GCTTGGTATTTTCACAAAACCCTTTGTGTAGCTGCAGACTAAGGAACAAGGTTGCT--CAATGTCCCTTCAGAAGGGACAAGGACTTCCCCAGTGGAATGCTTTACTAGGCTTCCAAGTCAAAAAAAGGGCCCT-TCTCTCTGAAGGGATGGGTGGAGCAGTGATGTACCT-TTGGCCAgcttatatattttaattgtgtGACCAGGGCAGGCTGTGCTCATGTTCCTTCCCCACTAGGTCATTTCCACTTGTgttctgaaaacaaaaaacaattgatTAAACAAAGAACCTTCCTTAGTAAACCTGGGATCTCTCCTTTGGGTTTGGACAAGAAGGAAGAAGGGGTGTTTCCATTTCTTCCCCACCCCATAACCTAAAGCTGGTTCAAATCTATTTGAGGGTCTGAGGAATAAGTGGATCTCTCTTGGCAGAATCTT---AATGTGTT-TACCCATTAGTCACCCCT-----TTCTATGGGAGAATCATTCCTGGACAAGCTCCCGGGTCAGAGGCACAGCTCTAGCGCTACAGAATCTTGGACAGGATAGTGACCTC-TTGAAGC------TTTGAATCTCTGGTGTGTTAAATGAGAA---CAATGCTATCTGCCTCCCAGCTTTGTGAGGAGGCTGTGTTACAAAG------CTTCTTAGCTAGTGCGTAATGACG-ATTTCAGAAACGATAGGTTTACTTCTTATCGCCTCTGGGCTGTCCTTCAGCACCGATTCACCTCACCTCAAAGGCCACCGGAC--ATTTCAGCA--CAAGCAACTGAGGACCGTTTCTGGTGATAGCAAATGTCAGTAGGTTCATGGCTGAAAAGGGGAATGCCACTTCCTTGTCAAATTCCTCCTTTCCTTCAGCTCCTAAGTGCT----------GGA------------TCCTCAGCAGC-TGAGAATTCCTTCATTTCAGTG

a score=19795
s chr3           145624622 1066 + 160039680 aggaacagtcctggactcaaatctctcctcttgtcttttcaaatttgttggtctggacaagtcgctaaccattccaaggctggaggttttcatctgtgaagtgtggttgatactgata---ccactttgatgaagtaatataggatgaaatATGTTGTAGAGGATGCTGTAGTAATAGTTGAGATGAGACATTTCTGAGGGGCTTGAacacacacacacacacacacacacacacacacacacacGAGGACTTGTGGTCCCTGGCAGGAGTGCCTGGGACCTGACCAGCTTGAG-----------------GGTTCCCCAAGGCCAAGGACATGTCCCCAGAGTCTCTGCATGTGACAAGCACCAATGGATGGGAACTGGCAGTCAGAGCCAGTGCTGGCATTCTGGGCAGTGACCTTTGTCTCATTGGA---GGGCTAGATCAGT-----CTGGTC----ACTGGGCTCCCTGCTTAATCACAAGCATTGCAGCCAAATTTCTGATGATCTAAAACTATTGATCAGCAAGGCCGGAGAAGCTCAGGGTATGTGAGGGGCACCGAAGCACGTGCC--TGTCTGCA-CTGTTGCCATGGGATTCTGTTCGGATGTAGACAGAGG---GGGTTTCTTTTTTATTTAAAACAAACAACAAC-GCAATGAAAAT--TCCCAC------------AGATCTTTGCAATTCTCTAC-TGCAGAGACTGCACCgtgtttgtgtgtttgtgtgtgtgtgtgtgtTGCAGTGTTGCTATGACAATGCATATGGTTTTATTTGATGGAAATATGCATAGAAAGAACAGGAAGTGGTATGTATGCATGACAAAACAAACGTGACCAGTCAGAAACCAGGCTTCT-GAATCTTGATCATGTGAATCTTTTGATAGCAACGTAAGGTGGAGGTCAT-GGTACAAAGATGCTACTCA--------------GCCCT---------GAGGAGGCTGAgggagctaagggttgagtagtacag---agctctgtcacttactcgctgtgtcacctctggcaagtggctcagctgtgagtggcttttgcttccctcctctctgaaacaagCAAGGAGCCCTTCCATGTGTCTCTGTGT-----------------GCTGTTGGGATGGAAGTGAGCCAACAG
s HiC_scaffold_1 132026503 1072 + 233722169 AAGCAAAGTCCTGGATTCAAAAGTTTCCGCTCG-------------GCTGG---AGTCAAGACGCT---------------GAAGATTGTCATTTGTCAAATGAGGTAGCTAGCAATAGTGCCCTCCTGGGAGGGTCGCTGTGGTGGAGGGGGGTTGTAAGAGGGCCTG--GCGAGGGCAGGGATGAGGCATCCC-------------CATGTCCCCGCCCCCAGCCGTTCGCAGTCCTACCTGACAGGTCGCCGGGTGCCCCGC---------TGGGACCTGACCCGGCTGAGTCTCCAGCTGCTGCTCAGGTTCCACAAGGTCAGGGGCAGGGCCCCTGGGTGTCCGCGTGCGTCAAGC-CCAGAGGCTGGAGCTTCCAGGCTGAAGCTGGCGCTCGCACATCAGGCAATGGTCATTGTCTCACCGGGCCGGCGTTGGGACAGCGGCTCCTGATCTTGAATTGGGTCCCCTGCTTAATCACAAGGGTTGCAACCCAGTTTCGGATGACCTGAAAGTACTGtcctgcaaagaaataaaaa---aagacttaCGGAAGAGAAAGGAGCCCttgtttgtgtttgtatttgttgCCATGGGATTCTATTCAAATGTATACAGATGCAAGGTCTTTTTATTtacagcaaacaaacaacaacaacaacaacaatgatcCCACCccctacaaaaaaaaacctttcagtcTGCAGTGTACAAAGATTGCACCATGTT--------------------TGTGTTGCAGTGTTGCTATGGCAGTGCATATGGTTTGATTTGATGGGAATTtgcaaagaaatcaaaagaagtcACATATATGCATGAC-AAATACACATAG------AGAATCCAAGCCTCTAAAAAAACAATTAAGAGGA---CTTAATGGTAACAAAATCTGGAG--CATGGGTGCGTGGATGCAGCTCAACGTTGCTGCCTGGGCCCTAACCAAGGAGATAGGGTTGTTGGAGGTGAAGAATGGACAGGATGATCCATTTGTGTCActcactagctgtgtgaccttgggcaagttg-ttGGTGGTGGAtaacttttgcttttctcatctcTGATGTAGATAATGACAGCTT-CAGGTGTTAAAATGTAGATAATGACTGCTTCAGCTGTTGAAATGGAAACTAAATGACAG

a score=20068
s chr3           145630239 3524 + 160039680 [encoded data, 4142 characters]
s HiC_scaffold_1 132033607 3629 + 233722169 [encoded data, 4142 characters]

a score=29481
s chr3           145638677 2203 + 160039680 TCTTCCTAAAGGAGGTGAAGCAAAGCA-AATGTGGTTTCCAGTTGCTGCTTCTCCCAGTGCGGAGGCCAGGGCACCTGGGAAAGGAGTGTGG--CTAACTGAG-CCTGAGCAAACCAAGG-CTCTCAAGGGAGGTAGGCTGCTCATAGCCAAAGCTTTTCAAGCCACTGACATAGCACAAAGC-TCTACTGTGGGGAAACTCAGTATCAGGGTGTGCCTTGTGCGCA----------------------------------AGATAGACCAGGTAATGGTTATTGATGAGACCAAAGAACTGGCCAGAGATGTCCTGTACATAGCCAGCTCCCACAAGCCACTGAAGCTGTTCTTTTTTTATTTTCAGGAGTTTGATATTGCACACCAGTTTTCAGAAGAAACATAAATAGGGCCCCAGGGAGC-TAGCATGCAAATGGGTCTGGCTATGGCTGC---CCAGGGCCTTAAAGTGAGTAGGCTTAGAGCTGCTCCACAGAATATGAGAGCT-GTGGTTGTGCAGTCCTCTCCCAGTGC--CTCTGTCC--TCCAGGCGCCAGGATCTTAGAGGTTTCTGGTGTTAACTCCGTGCCACAGGAAGAACGAGGTCCCCTCGAGGCCCTCCTGCCTCTGCATGAGCAGCTTGGTGTGTGGTTCTCTGAGGGGAAGATGGG---GACTACACTGACATGTCACTCAGTCACTCGGTCACCCCGCTCAACAGGTACTGTCTCGGAGTTGCATGTTTCTGTGTCACATGACGCTTGGCATACCAGACTATAGAAGACAGCAATGTCTGTTTGGGGCCTGCTGGGAACTCA---TAATCCAGGAGATCTAAGCCTCCATACTTCACTGATGCTGAAAATGTCTCTATGTCTACCAAAACAGATCTTATCTTATTGTGGGTAGCATGTCATGGTTTAGGATTCCTTTTAtctttccttccttctttccttccttttctctctctctctctctctctctctctctctctctctctctctctGttttttgagacagggtcttatatatctcagttgtccttgaactataactgagaatcattttgaactcttgttccccaagcctttaccacccgagtgctaggatcacaggcatgcatcatcacaccccattaatgaggttatgggacttcatacatgtcagacaagcgctctaccaacagagctctctctccaagcccAAGCACGTCCTAGTTCAATTGACTGGGCTTTTCTGGGTGGTACATGACCTGATGATAGAGCTTGCTGAGGTCAAGGTATCACATGGAT--------GTATC---AGGCACAGGAACTGCAAACTGTAATGATACAGGAACCCAAGTAGGAGTAGATGCTGGGAGACGCACTTGATACCAT--GTTAGTGTACCATGTGGGGTTCACTTTGCAAAGGATGTATATCATAAGGTTAAAATAAG--TCCCTT------------CAAGTGAGCTGGGGTGGGCTTACCTCACCCTCTCTGCTCTGAGGGTGAGAAACAATGTACAGGCCCAGC-TCTGACCCTTCCAGATGAGAAGCAGAGACTGGCCTAGGAGGTAGTTCTTCAAGGCTAGGACGTGGGCCATCAATATTGATTCTCTGATTCCTACTGAGAAAGAGAGTCCTTATTCTCCTGCTCTCCATCTCTTACCCTCTCTCTCCATATATGCATGTATGTATGCACACCGAGGGACAGAC-----ACAGGCATATAAATACATGCAAATGAGATGCTGGTATGTAGATACATGCAAATGAGAGTGTTTCTGTGATTGAGGCCAGGAGTTGATGTGTACACACATCGAGGGACAGACACAGGCATATAGATATATTCAAATGACATGCAGGTATGCAGATATATGCAAACGAGAGTGTTTCTGTGATTGAGGCCAGGAGTTGATTACAGGAAGAGTGCAATGTGACTGCTAATCTTGGCTCCTTGGCCAAAATTCAGGAGGGGGGAAAAAAAGTCTTAGAATCTC-CTAATGTTACCGGGGATTTCTTCTCTTTCTTTTTCAGGATAAATTATTCCTCACCGCAAACATCAGAAGCTCCAGTTGCTGGATCTGAGGCTCTGCCATGTCCTATTTATTTA---------------GCTGAGTGCCAGGGGAACTGGCTTCTGATTTATAGGAGCATGAAGATAATACTCAGCCTCTGGGCCAAGCCT-AGGGTGACTGTCAGGGGTGAAAAACATCCCGAGGAGTGCTTGCTCATCCAGACACCAGCAGAGGCTTACCACAAGTGTGTTGACACAGTGATAGGGACCAA
s HiC_scaffold_1 132041300 1800 + 233722169 tcttcataaaggaaatgaaacaaagcagaatatgctttccattttttccctctaC-AATAAGAAATCTGGGGTATTTGGGAGAAGAGGTTTGTTCTAACTGGGGCCTGAGCAGACCAGGAACCCTCTAGGGACAGAGGCCAGTCATGGCAAAAACGCTGCAAGCCACTGACCCAGTACAAAGCCTCTACTGTGAGGAAACTCAATATAAGGGTGTGCCTTGCGCTAAGGGAACAGGATACACAAACCCAAAGTTATAAAATAGATAGATCTGGAGGTGGATATTGACTCTCCGGGAGAGCTCGCCAGCAGCTTCCTCTAAATAGCCAGCTCCCACAGTCCACTGaaactgtgatttt---attttcaggagtttgataTTACACACCAGTTTTCAAGAGAAACATAAATAAGGCCCCAGGGAACCTGGCATGGCAGCATGTCTGGCAGCAGCTAATTACCCAGGCCTAAGGGTGAGCTACTCTAGTGCTG------------GGAGGGCCCATGGCTGGGAAGCTCCCTTCCTATGCACCCCAGCCCAGTCTAGGCTCTTGGAgcct----gtttccattgtt----ttgtgtGATGGGAAGAGCAAAGCCCAATGCTAACCTTCCTG-------GTTGAAAGTTCAGTGCACATTCCTAGAGGGAGAACATAGGATTGGATCTCctattctttcatttgttcattcactcaC-----TTACTGTGTACTGTCCATG---TGCATGATGCTGTA----------CTGGGCAAGGAAAAGTCTAAAAGACTTTAAGATGTGTTCTCTGACT-CTAGGAGCTCAGTCTAGT--AGGAGAGACAGGCTTC-------------TGCTAGAAAG--------------------------------------------------------------------------------------------TTTCCCCTC----------------------------------------------------------------------------------------------------------------CACTAACCCTTTAACAGC------------------------------------------------------------------TCTGAAGTGCACCTTACTG-CAGAT-----------------GGCATGTCATAGTTTATTTGGCTAGCTTTTTCTTAGTGGCatataaaatgatgaaatatcTTGCAATCCCCAATGTCTTTCACAGATAAGATAGAGTATATGAAAGTACAGA----GCATAGTTTAGTGATAGAGGA-CCCAAGTGGGATTTTCTGTTTGAGGATAAAATTGGCCCTCTTTGCAAATATATTACATGGGTTTCCCTTTGCAAAGAATATCCATCATAA----ACAATAAGGTTCCTTTTCTATAGTTACTCAAGAAAGTCAGAGCAGAGTGCCTTCACCTTTACTCCATCTGTAGTGGGAAGTGGTGGT--GGCCTAGCATATGGGCCATG-AGAAAAGCAGCAGGAACAAGCTCAGGTAGCAACTCTTCAGGGACTTGATGAA----ATTGATCTTGGTTCTCTGTCTCCTT----GATGGAAAACCATTGGCCATCTGTACCTCAT---GGACCTTTTTGC-----------------------------AGGGCCTGACCTATGACAGGAGTATAAACA--------------GCTC-TGTgtatatctatgtgtgtgtgtgtgtgtgtgtgtgtg--------------tgtgt-----------------------------------------------------gtgtacagacagATGTAAATGAAAGAATTTCTGTGATTGAGGTCAAAAATTTCTTACAAAAAGAATGCAATGTGACTGCTAATCTTAG---CTTggccaaaattcag---------aaaaatttcttACAGTCTCTCTAACATGACAggggatttcttccctttctttttttggcttcaCCATTCCTCAACCAAAACAGCAGTGGCTCCTGTTGCTGGTGCTGAACCATTGCCACATTCCATTTATTTAAGCAGCCGTGTTTACACAGCATGCCAAGGTGTCTGGCTTCTAACTTACAGCA-CATACAGAAAATGGACAGCTTTTAGACAGAACTTCAAAATGACCAT-GGGGATTAAATACAGTCTTAGGAAGATGTG-------AGATATATGGAATGGCTCAGATCAAGTGTATTGACTTAATAATATAGTCCAA

a score=31275
s chr3           145641181 1750 + 160039680 aggatggctttatttgcaagcaacagatgactcaccaaaatagtttaaataa-----------ggggtttattgtcacactcaaccagag-------catca-ttgggacagggaCTGGGTGACTCAGCAGTTTGAGCCCATTC---AATGCAGAGGGGCTCCTTATTGCTGCTCTGACA--------------------TTCTCCTGAAGCTCAAGGAGGGATGATGTCCAGCAGGCAAGAAGGGCACTTCCTCTCCTCCGCTTGCTTCTTATTATCAAGGATAGATATTCTCTGGAGCATCC----CTCCCCTCTTTCAGTAGCCTTGAT----------------------------------------------------------GAGATTAAGTCATGGTGACCTAAGGCAGTCCTGATGCAATCCTTAAGGGTGAGGGTG-GAGACAGGGGATTTCCTTCCTAGAACTCGTGGAAGGCAAAAAAACTCAACCAAAATGGAAACTCTGCTGATATAGC----AGGGACTCAGGGACACAGGGTGTGGCTGTTGGGTGGGCACCTAGTAGTAGCCATCATGTCAAATATTGAAATATAATGTTGTCACATCACTGATGGAATGAAAGCCTGTGAAATTATTGCAAAGACTTAC-TAAGTTGGGGGACACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAAATATAAATACCATCTATCCTTCTGAATTAATTGTTTAATATTTATCAATGGATGCCAAA---TCCCAGAATATGCACTGCCTACATAATATTGGCTGGCTGTTCTTTtg---tgtgagtgcgtgtctgtgtgtgtttgtgtgtttgtgtttctgtgtgtgtgAGAGAGAGACATAGAGACAGACAGAG-----------------------------------------TACTAAGAA--------------------------------------TTTTCTCTGACATTCAGTCTTTATTATCATACGGAATTTGTCTCTGTATGCCTTCCTTTTATAAAGG--------CAAAATAGC--AACAAGAAA--------------------------------------CCCCAAACATTGCA--------------------------------------------------AAACATTTTAAATGGCCAAGTATCGTCTTAAATGCAAGAGGTCAGCTAAAGACATGGGCTACTTTCCAAGAACAAACTAAATTTGGAATATAGGAGGGACCTCTCAGAAAGCCTTTCCCAGGAGCCTAAACTTTAAATTCCTGTTATGGGTGAGTGCATTTACTTTAGCTAA--------TCTCCTGAATATATAGAATTGTTCC-------------CCATTTGCTGGAGAAAGGCGAGATCCTTGGAAGGA------------GCTGGCTCAATTTTAGGAAGCCTATTGGTGGAAATCCTTTGTAGAGCCAGCCACA-TAATACCAAGAACACGTATCATGGCCAGACCTCTGTGTAACTCAAGTGGCTTCCTGTGACCTGGTTGCCTCTGTCTGGGGCAAGCTCAGACAATAAATCCTCTGAATTCTACCTTCTCCTCTGCTACTGCCTGACGAGCCAGTAACTAAAGTAGTTACATAGGCCAGTCCTCAATCGATCGATCGGGAGTTTCTTGAACACATCTGAAAA-GTAAGTATTTATTTG-AGAGTAGACCCTGAGCTGTTTCTTTAA------AACTCCCCAAACTCACCTCACCAGGTTATCTGGAGCAGCGCTCCCCTCAGACCCCATAGCCTCTTTGGTTACTATAAAAATAGGTGGTTAAATTCAGCTTGTGTTCAGGATGCGCCGTATATCTTTGATTAACTTATCCGGTGTCAGTTGGAAAATGTGACATGGTTTTATAAATGGAGTAGGTGTGCACTTCTCTACAAAAATACAC-------------------AGGCTGGGGCGGGGCACA--------AGGAGGTGA-AGTGATTTAAAGCAATCTCTTTTCTTTTTCTCCGGTGTG-AACAGTGTTACCACGGTGAAAAGTGGtgtttttgtttttgtttttgtttttCTAAGCACTTGCTTTGAGAAAGGGA
s HiC_scaffold_1 132044305 2221 + 233722169 AGGATGGTTTAAGCTGCAAGGAACA--------ACCAAAATAGCTTAAACAATTGATGGTGGGGAGAGTTATTATCACTCCTGAAAAGAGAGATGGGTATCAGCTGGGATCCAGAATGGGTGATTCAGCAGCTGAATTTTTCTTGGGAACCCAGAGGGTTTCCTCACTTCTGCTCAGACACCTCAGTGTGTCAGTGGTACTGCTTCCCAGGGTCAGGGCAGG-TGAAGTTCACCAAG-AGGAAAAGCATTTCCTCTCCt--ggtctgtttttattattaaggATATCCCTCCTCATGAGCTTCCTGTGCCTACATACTTCAGTATCACTGATCAAGTTTCAGAACTGGTTActgatgagagagagacagagagacagagggaaagaaagagagagaatattaTCGTGATGTAAGCCAGTATTGCTGCAATCCC-AGGGCTGAGGGTGCAAGACAGAGCATTGTCTTTCCTGAGCATGTGAGAGGGAGAACACCCAAACACAACTGGG--CTTTGCTAACAAGGATGCAAGGGAATGAGAGGCAC-------GGCCATGGGGTGGGCATCTAATAGTGCTTGATACACAAAGTAGTTAAAAA----ATTTTGGCATTAGCAGTAGAAGGAAAGTCTATGAAACTATTACAAAGAACTAcatgaggctggggatatagctcagtggtataagcgtcacctggcaagcatgaggtcatgagttcaatcctcagtaccagaaaaaaaaaaaagataactatactttcagggccagggatttagctcagtggtataagcacctgcctggcaagcttgaagtggtgagttcaatccccagtatatatataaaaaaaagaactgcatGAATCAGCGTAAAAGGACTTCCAAGGTAAAGTAAATGTGAATTTCTActaatattct-aatttttaattcattatttatt--tgtatcccaAAATCTACAAGAATATGCACT-------TATTTGTGGCTCTCTGTGCTTgtggtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagaaaggaggggatgcaagaaagaaaaaatacagagaggtagggagggggaaggagagaaaagggatttATACAGTTCTTCATTTTTATCCTGTATTCCTTGTAAGATTAAATTTCTATAAGtatgccttcctttttttaaaagcaaacaccAAAATAACCAAACATGAAAAGcactttatactttttttttttgtaccagggatcaaacccatgaccttgcacttactaggAAAGTGCTTgaaccagtgagctaaatccccagctccatgaAGAGCATTTTAAATGACCAAGTATTCTCTCAAATACAAGAGGTCAATTACACACATGGGATTCTTTCCAAGAACTAACTAATTTTGGAA-GTAGAAGGTACCTCCCCAAAAGTACTGCCCATGACATCAGAATTTAAACTCCTACCATAGATGAACTCTGTTATTTTAACTAACAAATGGCTTAACAGAAGATTCCAGTTTGTACCAGTGTGAATCATTCTGTTTGCTGGAGAAAGGTGTCATCTTTGGAAAGGCACATTGATAGTGCTGACTCACCTCTAGAAATCTGATTGGCAGAAGT-CTTCACAG---TAGCCACGCTGACATTAAGAACCTGTCTGATGCACTGACCTTCCTATCACTCAAGTGCCATCCAGTCTCCCAAATATCTCTGTCAGGGACAGGTTCAGAGGGTAAATCCTCTGAGATCTACCTTGCATTCTTCTATTGGCTA-------AGTAATT---GTGACTACTAAAGGAAGT----ATTCCACCTCTTTGATGCTCATTGAATgcctccaaaaataaaattatttatttgaagaaGGGACTTTGag-----tcataaaaaaaataaattccagaa--cAAATCCCCTGGCTATGTGAAGCA--ATTCTCTTGGGAAC------TCCCTTTGGTTactataaaaataggtgattAAA-----------TTCAGGATACTGTGTATATTGTTGATTAACTCATGCAGTGTCAGTTGGAAAATGTGACGTGGTATTCTACATGGAATAG--GTACACTTTTCCACAAAAATCTACTGACCGGAATTGTGGGAGGAAGCTGGGGGGGGGCACATCTTCAGCAGCAGGGCATGGTAATCTGGAATGGTCTCTGTTC--TTTCCTGGATTTATAACAACATCACCCtgtctcaaa---------------------ttatttttctcagcaCTTTTCctgatactggaa

a score=348773
s chr3           145643278 12651 + 160039680 [encoded data, 14041 characters]
s HiC_scaffold_1 132049040 12635 + 233722169 [encoded data, 14041 characters]

a score=63694
s chr3           145656940 2025 + 160039680 ATCAAAGCTGCCACTCAATCCTTGGTTGTAGAAGTTTATGACCTATTAATAAAATGGAAAAAC------------TATCATTTTTTTTATCCACTCCCCAAACACCACCCGGCCTTCCT----GCTCTCCCCTGAGTCATCGCCGTGAGCAGCTGGCACTGTCCTGGCAGCAGGATAGGAAACACTTTTCTTAGGGCACCGGTATCCAATGGGAACCATATCTGTTTGTTTCCTCCACCTGGCGCAGGGCCACAGGAAGCCCGGCATTTCTATCTAAATCCCTCACCTTACAGAACTTCTCGTCTTGTGCTAACACAGAAACATTTCACTGGAAAGAACTGGAGGGCACTTCTCCCACCCCACCCTGCAATCTATCTTCTGGAGATGATTGAGCAATTTGAAATATAGTAATTATAAGTCACTATCAAATGAGCTGGC-------------------------ACCTCCACCTCTCATGTTGTATTTCTGGAAATACCTTTCTCTTAATTACCCACTCAAAAAAAAAAAAAAAAAAGCCATGCATACCGCATTAGGAATTCAGAAAGGATTTCATTTGGGCACAGTCGATGAG---GCGCGCAGAGTCTACAGACAGAATGAAGCTGCTCATTTGTGCCAGCTTTCTGCAGGTCACGGGGATTAAGTATTAGGGAGGGTTGTAACA-CCGGGCTGACTGTGTGCACGAAGACataagaatgtgttaatacccagcctgatgcttggcacacagaaaatgcttaataaattataattactgctattACTAAGCACTATCATTATCTTAACTTTTATTACAATAGCATCCAATGCGTGAGCCTTGTTCTAGAAAGCATTTTCTAGTTTGTAGAGGAGATGGCCTCAGGCTATACGTGCA--------CATATATATATGGTATACTGACAATGTGATTAAAAAGA-CCCACGTAGCCTAGCATTCAGG-ATGCA-CAGGGTACCAGAGACCATCCCAATACAACACTCAG--------------------ATTGCCATTCTGCCCGTGGCCCTCCGTGGTAGTGAGAGGTGTGAAATTT--GTCTTCGTTTCCTTGGCAATAAAATAGCAGGATTGGGCCAGTT--AGAGTCAGAG-----AAGTGCCTCCAAAGATCAGCTAAGTAAAATAAATAAATAGTTACGAAAAGTGCTGTGTCTGAGGGTCAGGCCTGGCTGGCACTTGACCTTAGCAATGGGGC-CCACTGG---------GACCTTCTAGAGAGTCTGCCTTTGGCCCACCATGGGCTAGGTAGTTAGAATGCATGTATTCAACTGA-ATTTATACACAGCCCTGTAGTGCATTTTA-------TTAAAAGATGAGAAAG-GGAGGCTTCG---GAAGTTTGTAACGAGTGTACCTGTGTTAAGCCAGGCTTTTGGTAGAACCGAGTTTCCAAATTTTAGTGCTATTAAGGAC----TATATGATATGTGTCCTTCTGTGGAATCCACCTTAAAGTTCGAGAACTACCTTGCAGTTTCTGGAAGCCTCTTTGTAACT--GAGTCCATCACTTCAATTTTGTTTTCTAGATATGTCTTCAGTTTATTTGTGCTTTCAGTAACTGTGGCTCCTCCAGTTTCTATGAGATGAGAGTTTGGCAATTAGTGAGTTAAG-AACAAC------CTTACTCTTTAATGCCCCTGCCTGAGTTTGTTCCTATTTTCTCTAAagagggagaggggaggaagagaaggacggacacacacacacacacacacacacacacacacacagagggggagaagagagagagaaagagagagaggAACCTCTCAGAGATTGAGAGATACCACAGTTG-TAACTTAGTCACCACCACCGCTGATTTTGTTACCTGAGGCAGTCAAAGATGCCACCGCCCACGACCTGTGGCCACCTTCACAACA--GTTACTAGGCACAGAACTCTGCAGCCACTGGATAAGCACACCCAATGTGTGCTTTT-----GCTGTCTCTGAACCTTGG---GTGGGTGGTGGTGCCCTGGGTTATGGCAAGCTGAAGGCAGC---------TTGAATGTAGAATTAGTTATTTC------------------------------TCCAGTTAGATTTCAGCTTGAAAAGCAAAATGGTTTTAACGCCATTGATTCTTAAAGGACaaaa
s HiC_scaffold_1 132061669 2042 + 233722169 ATCAGAGTTCCCATTTAACTCTTGGTTGGAGAAGTTCATGTCCTACCAGCCAAATTGGAAAATGTGGAGTTTTCTTAGTTTCTGCTTTATCCAGTCCCCAAACACTACTGAGTCTCTCTTTCCGCTC-CACCTGAATTAATGTTGTAAGCAGCTAGCACTGCCTTGGCAGCATGACAGGAAACACTTTTTTTAGGGCATCTGTATCCGATGGGAACTATATCTGTTTATTTCCTCTACCTGGCGTCTGTCCACAGGAAACCAGGCATACCTATCTAAATCCCTTACCTTACAAAATTTCTTGTCTTGTGATAACACAGAAACATTTCCCTGGAAAATACTAGAAGGCACctctcccaccccaccctgcaaTTCATCT--TAGAGAAGGTTGAGCAACATGAAATATAGTAATTATAAGTTACTATCAAATGGGCTGGCTCCACATTCATGGAATCAAAAATTTATCTCCTcctcttacattttatttctggCAATACCTGTCTCTTAACTGCCCACTTAAAA---------------CCACACATACCACATTCAGAATTTAGAACAGATTTGATTTTGGCACAGTACATGAGCACGCAGATAGAGCCTACAG--AGAATGAAGCCATTTATTTGTGCCAGCTTTTTGCAGGTCATGGGGATTAAGCATAAGGGAGGATTATGGCAGTTGGGCTGATCAACTGAAATAAAACGTAGACAAGT-TTAATGCTCAGCATGATGCTTGGCATGCAGTAAGTGCTTAATAACTTATAATTGTTCCTATTGCTTGGTACCACCATTATCTTAACTTTTGCAAC--TGGCATAGAATGAGCTAGCTTGACTCTAAAGAATATCATCTATTCACTAGATTAGACGAATTCTGCTTATAAAATCAGTAGAATTCTCTGATACATGGCATACTGATGAAGTGATTAAAAAGATTCCATTGAGCACAGTTTTCTGGTGTGCACCAGGGCACCAG-GGCCATTTTAAACAAGCGCTCAAACAGCCTGGGCAGTTAGGGCATTGTCACTCTGCCTGCAGCC------AGTGGTGGGCTGGGTGAGATTTTGGCCTTAGTTTCATCTGT----AAGTAATAGGGTTACCCCAGCTGAGGGGTCAGTGCTCTCAAGTACCCAAAAGAGTCAGCTAGGTAAAA-------------ATGAAA--TGTCATCCCTGAGGATCTGAGCTGACTGCTGACTGGTCTTGGCATTGGGGAGCCATTGGGATACTTGAGACATTCTATGGGATCTGGGATTTGCCAACCATGGGTTAAATATGTAGTATATGAGATCTCAGCTGATGTTGATAAGCAGTCTTGtatggtattttattttcatttaaaagacaaGAAAGCTAAGGCTTTGCTAGAAGTTAGTAACTGATGTAAGTTCTCTTAGCTG----TTAGGCAGAGTC---TTTCCAAG-ACCATTCTTTTCAAGGACAGCTTGCTTGCTACTTGTtctttt-tgaaactctgtttgtAATTCTTTAACTTCCCCCAAATGACTG--------------ACTAGGAATCTATCACTTAGATAT--TTTCCTAGTGGTTCCTTCAG----CTTGTATTTTCAGTAATTGCAGGAC--CCAGTTTCT---CAATGACAGTTTGCTAATGAGTgagttaaataataaaaaatggttCCCTCCCTAAGGCCCTTGTCTGAGCCTGTACctatttcctcttaaaa----------aaaaaaaaaaaactgg----------------------------------agagaAAGAGATGTGTCAGA-ACAGAG---GAGGAACCTTTCAGAGATGGAGAGATATCTCTATTGTTAACTTAGT---CATCACTGCTGATTTTGTTACCGGAGGCAG----AGCTGCTGCCTCCCACAACTTGCAG------TCACAACACTGTTACTAAGCCCAGAGCCCTCCAGGCAGCAGCCAGTCCTTCCC--TGTGAGCTTTTCACAAGGTGTCCCTGAGGCTTGACATGAGTGTGCAGGAGCCCTAGGTTATGGTAA--TAAAGAAAGCACAGGGCCATTGGCCCTAGTCCtaagtatttctgtttctttgaaatcttcTGTCCTTCCTTGTTTGATTAGGTTTTAGCTTGGGA---AAGCTGTTTTCAA--ACATTGATTCCTGAAGGACAAAA

a score=4614
s chr3           145659774 301 + 160039680 TATACTGTGATAAGTGAGAAGAGTCTGGCA-TTGTTCCTCCTCCCACACATGTTCCGTTTGAAGCTGACGGCTGCAGAGAACATGTGCATTTTCATGGGAGATTAGCGAGCATCTGGAGAAGAAACTCCTGGCAGCAGGGTTGAGGTGTGTTGCTCACAGAGGGCGTGGATGACAGAGAACCTAAGCTCTGAACTGTGTGCTCTGTGTCACTGTAGCCCCTTCTTCTGAGGAGCAAAGAGAAGCACTACTTAT-------------TGGGTCAAACGCCATCAAGGTCACCTGACCAAATGTCCAAGA-AATCCTC
s HiC_scaffold_1 132067269 290 + 233722169 tatgTTTTAGTAAATGACAACAATAGATTAGTTATTCC--CTAACATCCATATTCTCTTTAAAGCTGGTAATTGCAGAGAACATGTGTATTTTCATCGAAGATCAAAAAACATT--GAGAAGAACTTTTGGG----------GAGCTTCTTAGTGTACTGAGG----------CCAATATTTTGAGTGCTG--TTATAAATTCGATGACTCTGGATCCTTTCTtggcagaaagaaaaggaaagtgacatTTACAGGGCAACTTTCATGAGCTAAATGCTTTCTAGGTTATCTTACATAATGTTCTAGAGAATTCtc

a score=31481
s chr3           145661926 2551 + 160039680 tccTTGTATTTTATAAACTGTTCCCCCTCACTGTGTCTCTAAGAAACCAACACTTGAAGTTCTTCTCAGCACTTCCAGATCTGCAGTGGTAGCTACTGAGCCAGAGACGACTCTTTAGACTCTAAAAGGAGATGCAAACTGAAGTGGATGGAATCATTAGTATCAAGCTGACACCATC---AGCATTACCATTATAATCAGAGAACA-GCATGGTGACACTGAGCCTGCATGT-CAC---CTTGTTTCTTTGCCAGACACCATGGAGGATGGTTTGGATGCATGTGAGCT--GTTTTCCAGGGACGAATGACAAGCTCCAGAGGGTGTAGTCGTCATTAGAAAGAATAAAAGAAGCACAGTTTGTGGGGTTTGTATTTAAGAGATAGATGGTGGGTGCCATGGCAACCCAAGGCTACTGAAGAACACTATGGTGAAATCTGGAAGTTTACTTCTGGACAGTAGCTAGCTGGTTATGTTGA-AGGGTACTGGATAGAAGGGTGTTGGGGTgtgggcctatgtg---agagagagagagagagagagagagagagagagagagagagagaggaagagagggaaggagaaagacagag-----------acagagacagag--------aCAGCCAGAGAGCCAGA------GAGAGCCAGCAGGTACTT-TGGCTGTGTTAAGGCTTCAGGTTAACCGCCAAATCTC-CCAGGACCTCAGCTTCTT-----CTAA---------------------------------TCCTCTGCTTTTGCTTTCTG---CTTGGATCTGAAGTC---------AGCAAAATCTATAGGCTCGTCTG-----------TGGGTGTTGTACATGAG-CCCTTATACTTTCAAAGATTTCCCCCATTGCCTTTTAAAAGAACAT-------------------TTACAAAATGTT---------------------------------TTTGC--------------------------------TGTGCTAGGGTCCGAGGATACAAAGGTGATGGAACGAAACTGTGTTAAGGG----TCTCTGGAAAGTGAGACCTTCTCTGTCAG-----TTAATCTCAGCATAGAATCTAAGATCCAGCCTGAAGCTCCCATAGAGTCTTTGAGAGCGAAGAGGCATGGCCAGCGATG----GAGAAAGTCGGCAGTCAGCCTGAGAATGGAGTGT--------GGGCTGATGAAATGG-----------------GAGAAACTGAG-------------------AGCAGCCTCTGACGACTACATACCTAGGGACGCCTCATCCTTCTTGTGGCCCAC-----------TCTGTCTCTTCTCCAGGCCTCCTACCTTTTCTACGTCCTAGCTTTCTTGTTCTGACTGGAGGCA---TCCTTGAG-CCCTGTGTAAGA------------AGGGACCAATTCTCATAGTGGAACCATCCTA------------------TCTGTGTTAC--TTTAATGCCGAG--GACTCTGAGAAC----------------------------------------------------------------------------------------------------------------------------------------------------TCGAGCCAGAGAG----AAATGAGACA---AACATGGAGGTGGG-------------------------------------------------------------------------------------------CAAAGACCCAGGG---------------AAGACTTC-GAAGGGGCATGGGATGTGAATGGAGACAATCTCTGTTTATAATCATGTCTGCAGTTATTAGATATTAGCCACCTGGAACTGAATGCAGTTAATTTAGCCCTGTGTTGGAAGCCTTATAGTGTGACCTACTTCCACAGGCCAGGGGCATCCAGGTTTTGATCCTTAGTAAATGCTTCTCTGTTGGAACACAGTTTGGAGTCGGCTCATAGGAACTGAGAAGTGTGCGGACTTGTGAGTCATAGACAGTTT--TTCTTCCAGAGCACTGTGGGAAAAGGATGGGCAGATGGCGTCAGATAAAACCCAGACCCACCCAGACTC-TCACTG-AAGCCTGGAAACAAATATGTTTAAAAGAAATGCTTTAAAAATCTAAT---CTCAGAAGACAGATTAAAAGCCTCTGCCCCTTGGCTTCAGTTTGGGTCTG--GTCTTATTTTGTTTGGGGGTAAATCACCAGGCTTTTCCAT-------------------------------GCGTGCTGTCTGT-------GAATGTC-TACAGTTCCAGAGGGTCTCCTCTTGAATGTTAAAGAGCCTTTAGGAAATGTTTCTACCATGCTGAGACTTGAGGACACAGCGATGACTAAGATGTGGATTCACACCTTGATGAAGGTGCTGCAGAGAGAGGTGAGAGTTGGGTAGAGTGACTA-------------TAAGCAA-ATTTGGTAAG-GACTTTGCAAA--TACAGGCAGCT-----TATGTCTAAGCATGGCCACATATTCAAGGGCGTGGGCTCAGGGATGGGGTCATCTTATCATGCTTGGGGAGTCACTCTTGATCT-TGCACATTTCCTAAACAGAGCCTGCCAGAGCA--CTCAAATTTCATGCTCCTCTGATTAGAC-----TGCTCACAACACAGTAGCAAATGAG--ATGAGGATTTCTAAGGACCTTCT-ATTCACAAGGGGTGGGATAATTTTTTTTATCAATAGTTCTTCCT-CTTTTCTTGGTAAATAACCCA-GCTTCTTAATGTTTCTGCCTTTTGGGGGAAAATTCTATCTTCTGGTGTCCTGACTACGGCT------CGTGAGTTATACTCTTGGCTTTACCTGAAATGCTCTGTGATAGAACCATAGGTTTCTGCTA------GAGAAAGATGATCCCAGTAATTAGAAGCCTTTATCTCAGTGGAAGGGACAACAGGGGGA---------GGGCAAGAGGGTTGAATTCCATGATTCCATGCCCTTTGATGACGTTTAGGAGTG-------------TTCCATCCTTGTCCTTGATCTGATATCTAGCTTGCTTGCTCTCTCTCCTCTGTTTACTTTGGGTCTAACTTTCTTGTTTTT
s HiC_scaffold_1 132068187 3091 + 233722169 tttttctatttttaaacatttttatcatcatCTTGCCTTTAGAGAGCCAACTCTTTAAACTTTCCTTTGCACTCTCTGATCCG------TCACTGTTGAC---------GTGTTTGAGCTTTTAAAAGGAAGTGTAAATTTAAGTGAATGGGATCAT---------GTTGACATCATCTTTGGCACCATCATTATAGTCAGAGAACAAGCACAGTGATATT-ATCCTGTACTTACACTTACTTATTGCCTTGTTAGGCACCATGTGGG-TTATTTAGGTAGATGTGATCTCTGTTTTTCAAG-ACAAATGACAGCCTCTGTGGGA---------------GAACAGTAAAAGAAGAATGATTTGGGCATTTTGT--TTGAAAGATGGATAGAAAGTGCCACAACCCACTAAGACTAAGCTAGAGTAAGATGGTGTCACCTAGAAGGTTGATTTGAGAAGGAAGTTAGATGGCTGTCTAAAGAGGGTGTTGTGCAG----GTActctaatgtgtgtgtgtgtattcggATAAAGGATAGGAGGTATGGAATGCGCAAGGGATGGAGGGctcaagtacaaaaataaaaaatatcaagcaCTTAGGAAAACAAAGGCTGAGCTCTTTTTATAGATAAA-AGCCACATGGGATGAGGGTCTATTGGTACCTCTTGCTGTAGTACAACTTCAGGTTAACAATTTAATCTTGTCGGGCTCCCAACCTCTTTAGCactaaaataggaataataatatCTGacattagggttttttttgtactttggaaTACTGGGgcttgaatccagagcctttatACTGACCTGCATCCCTAGCATCTTCTTCCCCCTTGTACTGGGGTTTAAACCCAggatctttacactgagctacatt---cctagtacctctcagacacacacacttGTTTTAGACCAGGTCTTACTAAGTGTTGAATTATCCAGGCTAGGTTAGAACTTGTGATCTCTTGCCTACCACAGTTAGGATTAAAGGCATGGGCCATTGTACCTGGTTTATAGAATTTCGATAGGATTCAATAAAATTGTGTAAGGGTCAACTCTTTAGAAACTGAGATTTATCCTGTAAAGGTGATTAGCATCTGCACAGGATCCATGTTTCAGTGAATACTTCCCACAAAGCCTTTGAGAAGGGACTGACACTTTCTGTGATAAGCAGAGAAAGTCAACAAGGGGAATGAGAGTCAGGTGTAATGGTGAGGACAGAAGAATTCACTGAGCCAGAGCAAGCCGGGAAATTAAGCAGAGCTGGGAAGAGTAGAAGTAACCTTTGAC------ATTGCTGTAAATACATCATCCTT--TCTTAACCACGAATCCagtctcctttctgttttctatgCTTTCTGCTCTTTCTAGGTCCTTTCTCTGTGTTGTTGAACAGGAGAAAAGTCTCTGAGTCCCAGTGCAAGAGAAGTAAGCAAAAAGGGCCAACTTTCATGGCAAGACCATCCTACAgatcctgttttcaaggtctttgttatggtttagaacTAAAATGACCTtgaaagcctcatgtgtttggaggTGGGGCCCAGGTGGAGGTCGGTGGGTGAGGTCATGACCTGGAAGAGTGTACTCTTGCCCTAgcccttcctttctgtctcctctttctGGCAGCCTTCCTCTGCCGCACCATCTCCCCATGccttctctgccttggagccagccaacctaAACTGAAACACCAAAATTGGAGTTGGGGGGGGGACAAATTAagcttctccttttttaaattgtgggtgtccaAACTTTTGCTTCAGTGAAGGGAAATTGACTAATACAGGATGTAATTCCAAAATCTAGGActagaggaagaaaatgagactTCTGAAGTGGCATAAAGTGATAAC--AGACAATCTCCACCTGAAATTCCTTCTTCACTAACTAGTCATTA-CCATCTAGAACCAAATGCAGTGAATGAAGCACCATGCTAGAAATCTTATCTCACAACCTACATCCTCAAGCCAGAAACATATGTGTTT---------GTGAATGCCTCTGTTTTGGAAAGCAATTTGGTGTCAGTTCATAGAAACCAAGAAGTGTGCCAGGCTGTGAGTCATCATCTGTCTGCTTTTTCCAGAACACCATGGGAAAATGATAGGCAGATTTGTTCAGGTAAAACCTGGATCCACCCAAAGTCTTCactgaaagattaaaaacaaatgaatttaaaagca---tttttaaaagccaattAACTCAGAAG--AGACAATAAGTCACTATTCTTTGGTTTCAACTAGGATTtgaaatcttgttttattt-ttattaagccTCCAGGCTCTCATATAGttgtatataataatatatatatatatataacctgtTATATGTAACAATAGAACCTTGTAGATTTCTAGAGGGCCTACTCTTGCCTTTTAAAGCACATTTATGAAATAATAACACCAAGCAGATAGGTATAGTCTC-----TGACTCTGAAG-------ACAGCATAATATAGTTGC-------------AAGAGCTGGGCTAAAT-ACTATGCTGTGTATGTCTAAACACTGTTTAGCAGGTGACTTTATAAAGGGACAGGATGCTGGAGCCACCTCAGAACACAACTCCACACTACAAG---------------CGAAGTCTTCTCATCACACTAGACCTGGTGCTCTTGAACTATCCGTGCTTCCTTTGCAACCATTGCAAGAGCAAGCTATGTTTTTCTCTGCCTCCATTTAAATGACTGTGCTTAGGAAATAGTGTCAGATGAGCCCCGAGGGTCTTTCAAAACCCTCTCACTCATGAGAGTCTGGATA---TTTTTAACCAAGTGATCTTTCTACTTTCCTTGGCAAGCAATCTAGGCTTCCTGATGTT--TGTAGTATACAGTAAAGTTGTATGTTTTGGAATTCTAATGGTAGCTAATAGATATGAATTATAATTTTGGCTTTACTTGAAATGGTGCATGATGAAACTCAAAGTTCCTGTTACATAATGTCAAAGAGGAGTCCAGTTATTAGAAACC-TTGTCACAGTGGAAGTGACCAAGAAGAGAAAGCATACTGGGTAATAGGACCATATTCCTCTGT---ATTCCATTTGGTAGCCTTTGGGAGTGTTGTTCAGTTTGATTCCACCATTGCTGATGGTGTGCCATCTAact---ttacttcttttcttctgtttactgTGAGT-TAATTTTCTCGTCTTT

a score=48719
s chr3           145674228 2621 + 160039680 TCAAAGAGGGCACAAGTTCATAGTTCGTGGTGAGTTTGCCAGTTTTCCATGATATAATTTATATAGAAATTAAAAAACAGTTCTTAACACATATGCATAATACAAATGCTCAATAAATCTTAACTTTTATTGCCAATGTAAATTTCCTAGTTTTTGTAGCTGTCTGGCTAACTGTGTATGTGATACG-GAGGTACAGTGACAAATTCGGAAAGCAATGCCTGTCTCTTCATTGAAGAGGGGTTTGT---------CCCAGAAGCTA-AATGCTCATCTTACTGCTATTCT------TCTTATTCTACTTCTAGAATTTCTATGCAT----GAATACTTTTTTGAGGAGTACTAGACAGTCACAGCATGTTCAGTCTCTTTGAGCTTTCCCTTCACTGTAGAAGCCGGTGATCTTTCTGGGTGGTGTATAGACTCAGGGAGAAGGAAGGTATAAAAAATGAACCC---------AAAACAATAAATTCTATTATCTTCTTTATGGTTACTCCGTTTCTTTCTGTCTCCTAAAT---------cacacacacacacacacaca-------------cacacacacacacacacTGTTATAGC-----------CTTTAGCTA------------TGAATTCTGCACCTAGATAAAACTGACTTG--------TGGTATCTAACTGATTAAGCAGTCCTTCTAGAATGCTTTGATGACTAAAAATATGGAATGATGTGCCTGCC----CTTTGTGTCCCA-TTCACTCACCCTCCTGTGAGAACACATACCTTGGGTGCTTTGTCAAGCAAGGACTTGTCTTGTTCCACATCACACATTGATTCTAGCTGCAGTAATACTTTGGGGAAGGAATATGATCTCAAAATAACCACCAGGAGAAGTGTGTCATGAAAGGTCACAGCAGTGGGGCAGAGGATATTGGACAGGAGAGTTCTAAAAATAGAGAGCAGGAGATCAAGACGGCAGCAGTGGTGATGAA-CCTTGTTGGCTTTGGTTCCCCAGAAAAGAGAAGGAGCAGCCAGCAGCCCCGACCATTCACAGCCCATCCCT----------CCAATATCCACAGTCTCTTTGCAGAA-------GTTGGGATG--GGTTAGCACATGC--CTCAGTCCTGGGTTTCAATTTTTCTTACATGATTTAATA------------ATGGAATAATTTAAAACAAGTCAAGGTATATTGAATATTATGGAG-ATTCTGCCTTTCTGCCACATTGCTAATGTCACAAGGAAGTCTAAGCATTTCTGATTAAGACT----GATTT----TTTTTAGCATCCTGAGCCAGCAGCTCTTTGCACTAGAGTTAAGCCAGTGTTCTATTGTCTCTC-TGAGCTGTGCCTTATTGTTAAG----GATACTTACAAAGTCAAACG-CAGAGTGCAGTGCACACATCCAAAGTTGAATGAACATGCTCTGCCACAGCATCTCCATTAGCCACTCTGAGGTCTGTACAGATCTGGTCCGGCAAAGAGACATATTTGAGATATGCTGTCTCACTTTCTGTCCTGAAATACAACTTTGACAACGATGAGTTGAGTAAGTGAAGATGTGTTAAAAGCCAACCAACCACCACCAACAACAACAACAACACCCCCCTCAAAAAATAAAAATAAAACCAACAAAACCCTTGGACCACCTATGTGAGTGTCAGTACATTTGCATGCATGCATGTATTTTTATTTTCTAATTCCACAAGCAGGAGAAGCAGGCCATGTTGGATGAATCCCTTGGTTTCTCTAAAGGTGAATTTCCCCAGTAGCAAGACAAGCTTACTGAC--ATTCGGCCAAGAGACAGTGAATGGATTGAAGTGTTT-CCAAGTACACAGTGCTGTTCAAATGGTTCCCAGC--TCACACCGCTGTCAGAGACCCAGTCTGTGCCTTCAAGATGAACCCACTCCTCCCTACCCAAGGAGGCCTCTTTTCTTCTTCTCTTTATTTCCCCTTCATcctctcccctccctcttctgcttcctccccctccccctctttctcttcctcctcctccctctTGGTtttgtttgtttgtttgtttgtttgtttTgagataggatcttcccttgcggctctggctatcctggaactcactctgtagaccaggttggccttgtactcaaagatcaacctgtctctgcctgcaaagtgcagggattcaagacaagcaccactatacccagctTTAAAGGAGGTCCCTTTTCGTCCATTCTAAAGCT-TTTATGGTATCATTCCAATGTGCAAGGCTCAGCGCCAGACAACAAGAAGCAGTTAGAGATGACTCACACCAAGATCCTG-CCTCAAGGAACTCGGAGGACAAGGCTGCAGATAAATCCCAGAAAAATGAGTCTCCTGGGTCTCTGTCTTAGCGGTTGCTCACTGCATTACTAAGTAGAGTAGGTTATTTACACGTGAGTTG-CAGT---TCTTAAATATTTAAGTATAGAAGTGCATGTTAATAAACTGACATTCGTCTGGAAATAGAATAATTAACATACGTACTATTACTATACAGCTAGTCCAGAATACTGGGAAATGTTTGTGACTACAAAGGTG---TTTGGGGGAGGCACTGTGAGGCC---TTTTGGTGGCTAAGGGTGGCAGGCAGTGCCCTAACCCTAGCCTTTGCTAGGCAACCAGTCCTCATTAGGCCCACCAAGCCAAAGCTGACCTGAAAACAACTGGTGCC-TCTGCCTCCGAAGTGAATTCCCCCATTTGTTTTCATTC
s HiC_scaffold_1 132084631 2227 + 233722169 TCGGGGAGGATATAAACACATAACTCATGTCA---TTGTAAGTACTTAGTGATTTAATTTATGTAGAACTCACAGAACAATGCTTGTTCTACA-GC------CAAGTGCTCAATAATCATTATCTGTTATTGTGATATCAAATTATCTAAATAATGTAACTACTTGGTTAACACTCTATTTGACATAAGACCTATAACAACAAATACAAAAAG--GTACTTCTTTCCTAATTGAagagatatttttttcctctctctcttcaaTTACGAAGTTGGTCTTATTTCTTTTAAGGAAGatcttgttatatttttaaaaattctatatatttagAAATACTTTTCTAAGAAATACTAAACAACTGAAGCATATTTGGTCTCTCAGACTCTTTC--TCATCGTAGGCactgatttttattatgtgtggt-tgtagattta---agaagtaaaatctgaaaagaatacctgaaataataaaaacaataaatcctATTATTTCCTTTATGATTATGTCTCTTCTTT--ATCCTTTAAAGAAAGCAGCGCACACACACTCACTTATACAGTGTTagctgtctcacacacacacacacacttctacaCTTGTTCTGGACACATTATCTAATGCCACGTGCCCAGATTCCGCAGCTAGATAATGCTGTCTTGGGAGGCTGTGATAGCTAATTAATTAAGCAATCTTTCTAGAATGCTTTGATGACTAAAAATATGGA-TGATGTGTCTATCTATCCTTTGTACCTCAGCTCGCTCACCCTCATGTGGGAACATATGCTTTGGGTATTTTTTCAAGCAAGGACTTGTGCTGATCTACCTCATACATTAATTCTAGCTGTAGTAATACTTTGGGAAAGGCATATGATCCCAAAATAACCAGCAGGAGAAGTGTGTCATGAAAGGTCATGGCAACAGGGTAGAGGATGTTGGACAGAAGAGTTCTAAAAATAGAGAGCAGGAGATCAAAGAGCCAGTGGTGATGAGGAATCTTTTTTGGCCGTGGTTcctgggaggaggagaggaagaagcagcA--CTTGGCTGC---CTGCTCATCCCTTCTGCTCTACCTGCCACTCACAGGTCTGCTGCAGAATCGCAGGGGTGGGAGGGTGGTTAGCACATTCTTTTCAGTCCTGGGTGCTGCCTGCCTTAAAACATTTTGATGAGAAAGGTATCTACAGAATGCTTAAAAATATGTCAAGATA---AGAATATTATGGAGAATTTTGCCTTATT--CATATTGCCAATATCACAAGAAAT--------GTTTTGATCAAGAATCCACAATTTCAGCTCTTTCACAGACCAGATCTTGAGGTTTTTAC----GAGTT---CAAGTTGACCATTGTCTTTCTTAAGTTACACGTCATAATTAAGTCTAAGTGTTTTGAGAGACAAACATTAGACTTTTGTGCATGGGTC---AGTGGGTTCAA----CTTTGTGAGA----TTACATTAATTACTCTAAGTTCTGT------------------AGAGACAGGTCTAGGC----CTACCTGACT--------------------------------------GCAGCTGAAGA-----------------------------------------------------------------------------------------------AAGTG---GTAC-TTTAGATGTATTGCCCAGCCCTTCTCCTCTA-----------------------CCAAATCAGATAA---------TCTCTCTAAAGGTCAATTTCCTCAGTAGTAAAGTAATCCTATTGACTGAGTTGGCTGAGAGACAATAAAGCTATGGAAGTGCCTGCCACCCATATAATGCTGTACAAATGTTTCTTAACAATCACATGGTTGTCAACGAACCAGACTATACCTTCAAGCTGAATCCACTCCT---TATTCAAGGAGACTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACTGTAC---------------------------TCATTCCAAAACTATTTACTGTGTCACTCCAGTGTGCAAGGCATTGTGCCAGGCTCCAAGAAACTTTCAAACATGAATCATAGCTAAATCCTGCCCTCAAGGAACTTAGAGTGCGAAAATGCAGATAAATCCCAGAAAAGCGCACTGCTTATGTT----ATTTAGCTTCAAATACTTGCATAATTGAACATAATGTGTCATT---AAGAGATTTATCAGTCCCTCTTAAATAGGTAAATAACAGTGTATATGGTAATTAACGTGCATT--TCTGTTAATAAACTAAGCAACATG-----------TATGTCTTTAGTCAAAGATACTGGGAAATGCATGTGAAAGCAGAGGTGCCTTTCGTGAGCCACACTTTAGTGCCACATTTTAGTG----ATGGTGAGTGACAGTGCACTAATGC-AGCCCTTGCTGAGTGAGTAGTCTTCATTAGGCCC-CCAAACCAAGACTGATCCAAAAGCAATTGATGCTGTCTGCCTCTAGAGATAATTTCACCATTTGTTTTCATTC

a score=69374
s chr3           145677829 4451 + 160039680 [encoded data, 4808 characters]
s HiC_scaffold_1 132086887 4198 + 233722169 [encoded data, 4808 characters]

a score=51092
s chr3           145684089 2094 + 160039680 AAAACCTAAGCCCTTGAACTTGAGACGATACTCTTGTCTCCTTAGAAACAGGCAAGTGGGAGACACACAAGAGGACACATTGCA-----TCTGCTCC---------CCTCCTTTAAAAAATA----------------TCCTTTGCATTGAATGTACTTGAGTGAAATTTATTT--AGCAACATAATATCATTCATTATTTAGACTAGGGGGGA-CCTAGGGTAAGGGAAGGAAATTAAGAAAGGGACCATTCTGGATATAGTTACATCTTGTGTGTGCCTCCTTCTCAAATGCAGGGCTGTTCCCTGAGCCG--CTGCCCAGTGAAAGGGG-CATTCACTGCTAGCAAAAGCAGGCCTTCCTGCTGCCAAGCCCGGCTGCCAGTCAGCAAGGAGAGACGGGAAAATTAATAGTGAGCTGCCATTTTCAACAC-TTCTTAGCAACTTAGCAAAGAGTAGAAACTGATCCTTCTCTGGAAAGAAAAAGCATAAAAGACTTCAAGAAACTCCGAGTC--AGTCTGATGCCTGTGCTGTATCATGGTTAAACCACGGGCGAGGTGTTTTCTTCTGCAAAGAGCGGGCCAGCGGCCTCTACATTATTAAAGGTGAAGAATTTCCAGCCCCTG-TTTCTTGCTTCTCCTTG--------------------AGTGTTTCTTTCTCTGCTTTTGAAAGG-----------TTCGGAG---------------------CTGCTGGGAGACTCA-----------------------------------------------------------TCTGGCTCAGCGTGGTGCCTGTGAGGAGAGGAAGGAGGGCAGAGTTTAGGCTGTTGGATGAAGCCAAGGAATGTCTGAGTGGTAGGACAAGGGAGTTGTTGACTTTGCTGAAAATCCTTCTCGAAAATACCTCCTATAATGCTGGGGTGTGTAGTCCCCCCTTAGTGCTGTTCCAACCCCCCTCCTTTTAAA-TAAACGTGTAGAATTCCAGTCCTGTGCAGAGGAAGTTAGAAA-CGAACCCCGCTGTCGCTATCTCCACAGGCATCTGTGTAGGTGTGACAGGGTGAATAGGCCCTTTGGGAATTTTAAGGGGAATCCTCTAGAGCCAAATTCCTCAATGAGGGTAAACTTCCATCAGCTGTGTAAACAGTGGGGCAATGTGTGAAGGCCAGAGGCAGTCTCCTGATAGTCGGCTACTGTGCTCAGGTAAG-TAAGAGGAGCTGTGGTCCTTCCACCCCCAAGGCCCCCAGGATGAG-TCGGGTTTTGTGGCTCCCAGTGAGTGGGTGGCTAGGAATTCCCTCTCCGCTTCATCTAGTACAGAGGGCAGTCTGACTAAGCGAGATAGCGCTCGCTCGCTGGCTGGAGAAAGCCAACACCCAACGTGGCTCCTGGTGTCTGAGTGCCTGAGGAGAACAGTAACTCCTAGCTGGCGCTCCAACTAGCCACTCACTGGCAG----CCACCCCAGTGGCTCAAGAGATGCCTGTCCAGCAGGACAGCATGCTCTGAGAACT---ATTTATTTGACTGTTTTATTTAACACAGGACGTTAATTGCAATTCATGGATC----CGGTTTCTTTATTCCCTACACCATCTGAAGGAGGGCAGAAAACCCAGGAACGAGGCTATGTT-CCTGTCCAGCCCTGCCATGCCCATGATTACACATCTGTCCAGTCTTGGTACACAGCGATGCTAACCTCAACTCTTCTTCGTATGGAAATCTGGATACTGAGTCCAGTTCTCAAGCCCATAAATTGTTCAG--AAACGTCTTT--------ATTC-------CTCTGACATACAA----GTTGTTTAGCTTAAACGAA-GAAGGAGGAGACATAAAAACTAGGTAGGTATAGTGCTTTAGCTGTATCAGTGTGTAACACATTCTCAAGCCTAGGAACAGATCGGCAAGAGGTAAATAACAGATCTCC---TTGTTGTAAACatattttaaatatcaaaaaatgaaaaaaataaaaacaaaaaataatGCAACTGCCACAAAAGTCAC-AATGTCTTTGGCTTTTAGACATTTTCTTT-------------------CTGTATTCATCAGTTGAATCTCCTCTTTCCGCGTAGGAAGCGTTGGCAGAAGCCCAGGCAA-----CATCCAACTGGGG-AAAAGTTTCTCTGCTCCAGGCTCCCTCAGTGTTTACCG-----AGGACGATAGGA-TTGTTTTGAGATAATGATGTCTAGCCTCCTTTATCAATAATGCCAATATTGATTTTCTCCTCTCGGAGCTCTACACCGAC
s HiC_scaffold_1 132094677 2125 + 233722169 AAATCCTGAGCCCTCAAACTTGA-ACTGTACTTTTGTCTCCCCAAAAGGAAAGAA-TGGGAGAAATGTGGGAAGATCTGTTCCTCTTTTTCTACTCCACTCTCCTTCCTCCTttacctcctcctccacctcttcctcctcctttagATTGAATGTgcttaaatgatatttttttttagCAATGTAAGAAGATTAATTATTTAGACTGGGagaaaatcaagagcaaggaaAGGAAA------------------------------------------GCCTCTTCC--AAATAGGGAGTTGTTTCCTGA-CCGATTTTCCTAGTGAAAGAGGTCATTCACAA--GGGAAAAGCAATCCCCACCTCTGCCAGGATGGG----------ACTGTAAGAATTAGGGAAATTAATAGTTTACTACCATTTCTAACACATTTTtaacaactga---aagaataaaaagtgatCTTTATCTTTAAATGGA--GCATAAATGGCTTCAGGAAATTACTCCTTCTATCTTAAGGCCTCAGCTCTAACCTATTGtcactatattt----tcttttcctctgccaA--------TAGTGGTCTCTAAATAACCAAAGGAGCAAAACCTTAAGACCTTGCTTTCCTGCTCCTCTCTGCTTTGACATTCAGTTGACTGAGCATCTCCCCCTCTGCTTTGGAAAGGACCCTGTTCTTTTGGGAGACCTTGCTTTCCTGCTCCTCTTTGCTTTGACATTCAGTTGACTGAGCATCTCCCCCTCTGCTTTGGAAAGGACCCTGTTCTTTTGGGAGTTCTGTCCTGGCTCTGCTTCATGCCTGCAAGGA-----AGGAGGGCAGAGCT---------GGATGGAGCAGAGGAATGTCTGAGGGGCAGGGGAAGGGGGTTGTtgattttacttaaaatatcaCTTGAAAGTCTCTCCCATAATATTAGGCTTTGTAG-CTCCCCTTATTTCTTCTCTGGCTCCccatttcttaaaataaacatGTAGGATTCTAGCTGGGTACAGAGAAAGTTAGAAAATGAACCCCACTGTTGCTGTCCCCACAGGCATCTGTGCGGGTGTGACGGGGTGAATAGGTCTTTCGGGAATTTGAAGGGGAATCCTTTAGAGCCAAATTCCTCAAC--GGGCAAACTTCCATCAGCTGTGTAAATAGT-GTGCAATGTGGGAAGGCCACAGACAGTTTCTTGATAGTCAGCTACTGTGCCCAGGTAAGTTAAAAGGATTCATG----TTCCA-GCCCGAGGCCTGCAGGGTGAGAGTGAGTCTTGTAGTCCCCGATGAGTGGGTGGCTAGAAATTTCCTCTCTGCATAGTATG--AGGGAAGGGAATCTGATTAAGACAGGTAG----GGCTGGCTGGCCGGAG-----CCACACCCAACAGGGCTTCTGG---CTGAGTACA-GAGAAAACCTGTGACTGCAAATTGGGGTCAGAACTGGGCACCCACTGGTAGATGTTTATCC---TTGCTCAAGGGATTCCTG---AGAAGAGTAGAATGCTGTGTG--CTGGAAGTTATTtggctactt--tttaaaatatgaagttaAATGCAATTTAtgtatctctttaatttaacTATTCC---CAACATCTGAAAGAAGGCAGAAACCCTAAAAAC-------TGCTGCCTGTCCAGCAATGCAGTGTACGTG----TGCTTCTGCTGGGTGCTGGTTTGTAGCTGTATTAACCTCAC---------------ACATCTGGATGCTGGCCCCAGCTCCTGGATCTAAAGCTAGTTTAGTTTGCTGTTTTTTGCTGTCCATTCTTCCTCACTCTGACATCcaatttgtttgtttagtttcaaTGAGTGGAGCTAGATACCAAACAACTAGGTA---------CACTATGTTCATTGGTACATAACGCATTCTTAAAAATATGAGCAAATCTGCAAGCGTAAAATAATAGACTTACCTGTTGTTGTAAATATAGCTCTAGTAGCAAAGAACTAGATG------------------------TGCTATAAAATCCACGAGTACATTTTGGTTTTAGAGATAGTCTTTGATGCACATTTTTAACATCTTGTTTACACTGTTTACTTCTGTATCTTCCCCACTGATACCTCTGGTACTGGCTGAGGCCAATGATCATTGAGCTGAGGCAAAAGTCCCTCTACTTTTGGCTTTctcactgttttccatctttggcTTAATTGTACTTGTAGTAAGTTTATAA-GCCTTACCCTTCTTATTAGTAgaacttgtatttatttttccattt------tttacacCCAC

a score=61370
s chr3           145691196 2608 + 160039680 aAAAGCTCTCATACTTTTCTAATGCACCCCCACAAAGTTGGAGACTT-------TTCTGAAACAAGTTATAAATCTTAGTACCAATAAGTAAGTATCTAATTCAAATTACATTGCCTAGACACAGTGACACGTAATTATTTGTAACTTATATAGAGGTATGTGCTAAAATAATTACATAAAGCCTTTAAAAGATAGA----TCTCCT-GAGGACCTCTGGAAAAAC--AGAAGTTT-GGAAAATTGAATAAGAGCCCATCCCATATTTAAACATTTGTGCAGAAATAAAAGAGCTCTGGGCAACGACTGGCTGTGTGTTTAACTTCCACTGT--------------------GAATATTTTTGTAATTTTGGTTTGGTAAATAAGCAACTCCTCTCCAGCCCTCGGGCAGTGATATTTAGGCGGTGCagagggaactaggccgaaattggagcatgagggattgaagttagaacgtaagcatttaatgaccgggaggaacaaaggaaggacttcctaag-atcattgtgaaaccccattctctagagggctgcagcataggatcgatttccatgtctggtttaaatctggcactgcctaagggtgaggagaACCCAGAGTGCTTTATTTTGTCCCT--TGTCTATGTTTTGAAGACCTTTAAAAGGTGGTTTCCTCATTT--AATGTTGGAGACGAGAAGAATTCGGGCTGTACAGTAGCATCAGGAGTCTTTAAAGCGCTCTTTCTCCTTACGTGAGATTTGCTTCAC-AGGCACGATGCCCACTGCTT------AAGACTTACAGCAAGTGCTCTGGGAGAAAGAGACTCTCGGACTGCACCCACTGCCAGCCCATGACCGTTCTCACTGTGGCCCTGGTGCACGGTGGTTTTGGTCACGTGTATATACAACAACGTTCAAATAAGCAGTCATCGGAACCCTTCCTGGCAAG----------TCCCATATATGCTATCCATATGTAATGTATCAT---TATGCACAGAGGGGAGGGGCGGAAGGCCTGGAAGCCCTTGGCAGCTGTGCTGTCTGGTTAGAAAAGGAAGTTA--CGGAGCTTGGACATTCAGTTCTGAGACAGGATCCCTGAGTCAACAGGATTTTAATTATGTATGTGGCCTAGAAGAGACATTTACGCAAGAGGAACATATTGTTGTCAAATGTGTTTGTGATTTGCTCATGGTTCAGAATTGGAAAGAAGCCTAAAGTAACTTCTGAAGGAACAGGACTGGGCTGAA-GAACGTGAATCAAAGGT--------CAGC----GGGGAATAGCCCGTGTCCTTGGCTCTCCACATGCCGCCTCGCACCTAGCACAATCCCTTCTATTTTACA-----CTATGTATTATTTACAC-TATTCGCCTTACAGAATTCTACACTGTTTCTATTTTCTTTAACTAGGTATCAGAGAACACACTTGTGAGAGTCTTtactcaggaagccagcgcaggaagatctcacgttcaaggctagcctgaggcacagagcaagattctgtc--tcataaaaacaaaaCCAAAAGGAAACCTTTTACTTTAAACCTGTGCTCTTCCTTC-AC-AGGGAGAGTTGCTTTTCACTTTATTGTGCCCTTGTGTGTTATTTTAGAATAACATTATTTGAGAATAGTTTTG--GGGAAAGCAGAAACTTGATTGCCCTG--------------ATGAGATACAGAAAGCCTATTCCGAGTTATGGCGG---------CTGTCCTAGGTCTACCTATGGATAAAGTGGATTCAGGAACCTTGGGCGCCCTGGAAGTCGGAGAGCTGAGCTTCCCTAACTCTTGACTCC--ATTGAT-TATTCACTGATAGGCAGAGTC-CTAACTCGGTATTTTCAAAGCACCTATGAATTGTCCAATCTATAGTTTTTCTTTAGGTGGAGAGCTATGTA----TAGCCTCGTTTAATTTAGCTTCTGAATTTATTCTTATTTAATTTCTCTTCTCAACCACCGCACCCCAATCCAGGTATATTGTATTGTTTGACGACATTTTCTGCTTT----------------GAATAGCTAACAGTTACTGAGCCCCGGGTGAgttagctttctgccgatgacac---atgcctgagggagtcagtctgtgaggaagaactgtttgctttggcgcagggtttcagaggtctcactgtgtggttgct-------accagcctatgct---ggcaatactggtatgttaacc-------aggaggatggttcgcctcctggcagccaagaag--------------------------------------------------------------------------------------------------------------gaaagagaca----------gagaaagctgcatg-----------tgggtcccaacatctgc-tcaggaacttgtgtccagtgatctaatgtccttctactag------tgtctagg-------GTCAACTCCCAAGAACAGCACAGGGTGGG----ACACCTTTG--------------GGGAAATACTTAAGATCC-TACCATAACAAGCAAACCTTCctagacattgtcttaagggctttctttatattg-----cccaattttcacaacaagctgtctgatgcagcaagatttattggcaatcgaattgaaacaggaaaggactgtgcccaggcaggagaaacaacttgctcaaggtcacgtacctggaaagCCAACAGCCT--GACTCTGAGCCTTTGTCTCCAGTCTCAAGCTGCAATACTGCCTAGAATAATGAGC--------------TCAAGGGTGTTTCTAATGATTATTTGACAACCTCATATGAGTATCTAATAATATTTTGGTCATTTTTCTAGCTGTGGTTTTTCTTTTTCTTA
s HiC_scaffold_1 132115278 2744 + 233722169 AGAAGCCTTGCTAGTTCTCTAATGTATACC---AAGGTTTGGTGTTCACTGTTGTTCTGAGATAAGTTTTGAAACAGAGCAC-AATAGGAAACTACCTAATCAAAAACA-ATTAACTAAACATACTAATATTTGAAGTACTATAGCTTGCACAG---TACCTACAAAAGTAACTAGATGAAATCTTCGAAAGACAGACAGCTCTCTTTGAAAATTGGTGGAAGAATGGAGaagtttcagaaggctgaaaAAGAGCCAATGTCAGATCTAAACATTTTTGAAGGAATAGAAGAGATCTAGGCAACTGCAGGCtgtgtatttaatttccattgcTGAAAAATACATCACATTGAGAATAGTCTCATAATGTTAGTTTGGTACTCGAGTGGCTATTCTTCAACCCT-----------ACTTAGGCAGAGCAAAGGAAA-TGGGCTGAAACTAGAGCATGAGGGATTTAGGTTAGAATGTAAG--TTTTATGACTGGGAGGAATATTGGAACAACTTCCTAAGGAACGTTGTGCAACCTCATTCTCTAGAGGTCTTCAAAATAGGATAGATTTTCATGTCTGGTTTAAATCTGCTGCTGCCCAAGGGTGAAGAAAATCCAAAGTGCTTTATTTTATGcctcatatatatattttgaagatctcttaaaatctattttctcatttcaaatgTTTGGAAATCAAAGA-TTTATGTTATATCATGGCATCGCCGatttttgaaattatcttttatcTTAAGTGAGCTTTGCTTTGCTAAGCAATACCTACATTGCTTCCTCAAACGACTTTCATGAAATTCACATGGAAA----GAATCACCAAGCACATCCACTCCCACCCcacctccttcttt--ttttcttttggtacattGTGTTTTTGGTCACATGTATATACAACAAAGTTCAAATAAGtagtcacaggaaccttttctggCAGGCTTTCGCAAATCAAATATATGCTATCTATATGTAATGCATAATAATTATACGcagagaaaagaggcagaggGCCCAGAAGCTCTTGGCAGCTGTGCTGTCTGGTTAGAAAAGGAAGCAAGTTAGAGTTTGGACATTCAGTTCTGAGCTGTTATTCCTGAGTCAACAAGATTTTAATTATGTATGTGGCCTAGAAGAGACGTTTACGCAAGAGGAACATATTGTTGTCAAATGTGTTTGTGATTTGCTCATGGGTCAGAATTGGAAAGAATCCGAAAGT-ATTTCTGAAGGTACATAACTGAACTGAAGGAACATAGGATAATGATACCTCTCCTAGTGTCGGAGAAATAATTGACATCCCTGGCTCTCGTTCCTCACTCCCTCGCCCgacacatttccttgtctttcacAGTTAGCTTTTTACTATATATACATAACTTTTTAACAGCATTC-------------------------------------ACACACT-------------------------------------TCACACCAT-----------TAAGGTAGAAATAAAGAttgtattaattataa---------------------ttttatttttaaacattgtttttccTGCTACGATGTTGAGATGATTTAGAGTTT---------TTATAAGTTTTCTTGGGTATATATT-----AGActacttttgaaaaaaaagtaaaaaatttgttGTGCTGAACTGAGATGCTACATGAGGTATAGAAAGCTTATTCTTAGGTATGGCGAACAACTTCTCTATTACAGATC-ACTTCAGAAGACAGAGAATTTAT---CTTTG------CTAGGAG---------TGAACTTCTCTTTCT-GTAACTACTTATTGATCCATTCACTGACTGGCTGATTCGTTCACTCAGTTTTTGCTAAGTATCTATGAG-TGTCACCTCT-TACTCATTCCTCAACAGTAGACCTattcattcttattttgttttaatttaccttCTTAATTTACCtttgtttaatttaatttctc--------cATACCCATCTAGATATGTTCTATTATATCATGAAATTTTGTGCTTTTGAACATTGTGCTAACAAGTAAGTAATAGTTTTTGAATAC----TTTGTTAGCTTTccttcactgtgacaaaatacctgagaaaagcaACTTATAAGAAGGAATTGCTTATTCTGGCTCATAGGCTCAGAGACTTCAGTCCATGGCCACTTGGCCTGGTCACTCTGCACCTAAGGCACTAATGGTGGG--AACTCATACAGAGGAAAACTGTTTACCTCATAGcagtgaaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagggaaaggaagagcaaGGTGGAGggataaagaaagagagagaaaaacaaggagaaagagaCACAAAGTGAGAGGCTGGCATCCCTTACCTCCTTCGAGGGCATGCCTCCAAC-ACCTAACTTCTTTCCACTAGGTGCCATGTATTAGAGGTGCTGTGGCCTCCCAACAGCGCCACTGGCTGGGGACAAAACCTTTAGCATGTaggcctttgggagacatttagGATCCAAACTATTACAAGCA---TTTACCAGAGATTGTCCTAAGACCTTCttacatattgttttatttaattatcatACCTGGTAACCTTATAAAGTGAGCCTGATTAGCCACACCATTTAAATATCAAGAA--------TAGGCAGAATAGGTatcttgctcaaggtcacataaGCAAGTAAACCAGGGCTTGGGATTCTGAGTCTTTGTTCTTGACCTCATGCTCTACTGCCTCCTAAGATTATtaactgtatttttcttatttaaaaattttcttcaagGAGAATTCTCAAGGCTACCTGTATTTCTCattaaatt---gtcatttt--taccttttgttttcaTCTCTCTTA

a score=46884
s chr3           145694808 1626 + 160039680 TACAACTCTCAAAGGTTCGTAAAGCCTTGTAACGTAACAAGATCAACACCACATATCTATAAA--TTCACATAACACAAATTATTTTTGGAGATAAAGGGATTGCCCCCACCCTCCACTGTCTATATACAGTACATACAGTACATTAATCCTTAATGCTGTGA---------------GGAAAAAAATACAACCCACTT----------GGAGGGGGAAGTGCAGAG----------GGTATGCCACACTGGCTT-CTGCAGCCTAG--AGAGACACGAAAACAAA-TTTGTAACAGACCTAGAAAGGGCAGCTATGATTTTTGAGAGGATGAGAACCCAAATCATGTTTGTTAAATGCCAGCTGTACCTTCCAACACATGTCCTTTTAAGATGAGCCAGATCTGCCAA-CCAAC-TATCATCTTGGAGCAATTAGAGGTTTTCAGGTTTCCCCCTCTGGAATCTTATTTCCAGTTGACAGATTTTGATGATTCCCCAAGGATAATCATTTGTAGATGTCATGTTCCTTTTAATGGAGGGTTTTCAAAAAGCAAATGATCACTTTGTTAGAACTTGGGAGCTCTTGGCTG-----GCTTTGTCCAAGCCCAGTGTTAACAGCTGAAGCAGCTGGGGACAATGGAAAGTCAGGCTGT--CCCTTCATGGTCTGGTTCTAGTGTGTGCTGCAGagctgtcaggccgggggcttagttacttcaactc-------------ttctgcttctgtaagatgggaacagcagctgctttcatctcatagatttattgtgaaataagacagtttgtgtaaagccaggggttgatcagttggcccatatgaaacacttgttaaacattagATTTCACCCATCAAACCACATGGGAATTAAAGGTAACTTATGTGAACTCAATGATTTTGAAAGACCTTCATAGAA-TTACCATCCATGCTGCAAATTACAGCCCCGTATTACTAGAGACCTTTGAGTGTATTTGGATTTTTCAGATATTCAGAGCACAAAAGATTGCTTTTTTTCCTCTCTGTAGATAAGAGATGGAAAAGCATTTTTCTGTTCTAAAGTAATCTCCTTTACTGTGATCTTTGCAGACATGTTCACTTGATTTTATTCCATGATAAAGTCTGAGAGAGATGATCGCAAGC-----TGCGGGGTTT--GACATGGAATCCCTACTGCC------CAGG--GAAAATAGAGACCATGGGAGCC--------TCTAAG----GGTAGAGCAAG-----------------TAGAAAACACAGGG-----CCCAGGAGAGAAGTTAGTCCTATGACTC-----CTGTGTGAGCCACAGTTTGATGAAACTGACCATTACCTACGGATACTGCTTCCCTAGCCAATGGAGTTATAGATACTGCTTCCCTAGCCAATGGAGTTATAGATACTGCTTCCCTAGCCAATGGAGTTTGGAGCATCTGCATCTGGAGTGACCACAGCTACATGACTTCCCTGGCTGCACAGCTACTCACTGCACAGTATCA-TCTgaattctagccctgcctctttccatttgtgtgaacttgacagcttgcttgatttcttcatcttgttcttccaatcagaaagcagagctagtgataccacctcTGTTGACT-----TGAATTAAATCCATTAAAATTTGGTGCCTGGCTTATAATAAATATTATGTCAGTGTCAGAACTTATTAACATGGTAGAAGGAGTA----AATTGTTGACATT
s HiC_scaffold_1 132118109 1644 + 233722169 TACTATTCTGAGTCTCTCTTAAAGTCCTATAAC-----AAAATCATTGTAATATATTTGTAAAGATTcatgtgaaataaattattttagaatataaaGTGACT---------------TTTCTCTTGAAAGGCCATTTGG-AGAATAATTGTTAGTGATTTGATttgctaaaaatacaaaaaaaaaatgctgtgaaGTTCTTTggtaaagggaagaaaagtgcaaAACATACCTAAATGTGTACCGTATTGTTTTTCTCTAGCTTAGCCAGAGATTTCAGAACAGAGTTTTTAGAAAACCTAGAAAAGGCAACTATGATTTTATA-AGGATAAGAACTCGAATCATGTTTCTTTAATGCCAGTTATACCTTCCAAAAAATG-CCTTTCAAGATGAGCCAGATCTGCCAAACCAACATATCATCTTGGAGCAATTAAAGGTTTTTGGGTTTCCCC-TCTGGAATCTTATTTCCAGTTGACAGATTTTGAAGGTTCCCCAAGGATAATCATTTGTAGATGTCATGTACCTTATAATGTAGGGTTTTCAAAAAGCAAATGATCACTTTGTTGGAAACTAAG-GCTCATGGCTGAATTCACTCTGTTCAC-CGCAGAGTTAGCATCTAAAGTAGCTGGGAATGCTTAAAAACTGGGCTCTCCCCCTTCA-GGTCTGGCTCCACCACGTGCTGTATCGCTGTGTGGTCTTGGGC-AACTTGCTTAAACTCTTGGTGCCTTCCGTTTTGCTTCTGATA---GGGAATACCAACAGC-ACCACCTTGCAAATTTGTTGTGAAATAAGCTAATCTATGTAAAGCATGTGACAGAATGTTTGGTCCACAATAAGCAGTCATGAAATGTTAGATTTCATCCATCTCAACACTGGTGAAATCAAAGTGACTTATATGAATTGAATTCTTTTACAAGATCTCCATAGCATTTGTTACTCACCCCATAATTCCTAGCTTCATAGCACAAGAGACTGCTGggggttttaatattttt-agttattcAAAGTACAAGAGATTG----TTTTACTCTGTGTGGATATGAGAAGAAAAATC-CCTTTATGTcctataataatttattttacattaacaTTTAGAAACATCTTACTTTGATTTGATTCCATTATAAGG-CTTTTAGAGTTAATCAGGAGTGTAAATGGGTAGTTTTGAACATACAGCCTCTATAGCCAGGACACAGGCAAAAAACAGAGACCACAGGGATCCTAAGATTTCTAAGACTTGGAAGAGGAAAGGGCCTGGACTCTGAATTGGAAGAAGCGAGATGGATCAAAGCAAGAAAGTTGGTCCTGTGATTTCCAAACTGTGTTTGCCAAA------------------------ATGGTTA--------------ACTGTAATTATAGGTATT-----------------AGCTACAATTAATATTTCCCCAGTCAAGTAAGTTTGGAAAGTC-----CTGGATTAAACATGGTTAAATTGCTTTCTTAGCTATAGAACTACTTACTACTGGGCCTTAGTCTGAATTGTGGTTCTGCCTCCTTCTAGCTGTGTGACTT---CAGCTGGATTAATTTCTTCAACTTGTTCCCCCAGTTGGACAATACCGATAGTGACAGTGTCTGTGTCAGTTTATTATGAGTTAAACCACTTAAAACTTGATACCTGGATCATAGTAAGCACTA----AGTGTCAGCTC----TAATGTAGTGGAAGGAATACAGGAATTCATGTCATT

a score=7434
s chr3           145696935 280 + 160039680 AACTAATGTCATTCAATATCAGCTTTGGCCTTTGAACCAAAG-TTTGAAATTTTTGAAGAGCATCTATGAAATGGGAGAAAACCTACCCATATCCCAGGCTCAGTGTGAGAAATGTTGCACACATACAAG-TGATAGGACCTTGAGGTAC-ATGCAGTGTA--------------------------------------------------------CCAC----------------------CCTACCACAGA--------------TGATAGGTGCTGATTTAATATAAAATCTTTAGAACGTAACCTGTGTGCTACAGAGTGGAATATTCTGGAATTCTGTCCCTTTCCCATTGTTAGGAGATAGAGAAAGA
s HiC_scaffold_1 132119740 374 + 233722169 AATTCATGTCATTTAATCCCAGCTGTGGAGTTTGGCTCACAGATTTGACATGTTTGAAGACTGTCTATAAAGTGAGAGTAAAAC-ATTCATATCTTAGTCTCGTTTTAAGAAATGTAATATACTTGAGAGATGTTAAAAACTTAAGGAACTATACAGTGTGAAAAGCACAAAATAGGAGTACAATAAATGATATAGCTATTGTTATTCCCTAAATCTCCACTAATATTATTTACTAAAATACACCAACAATGGACTGGCGGCCTTGTGTGACATGCATGAATTGAACATAAAATCTGCAGAATGCAATCTGTCTGTTGACATGTGGAGTACCCTAGGATTCTGTCCTCTCCCCATTATTAGGATATAGAGAAGGA

a score=14324
s chr3           145697468 1229 + 160039680 CTCTCAGAAAGAGACGCTGCTTCCTGCGTTTCCCAAATGAGGCCTTTTCTGTCTCTT-TCTTCACACATCCTGTGGCGATGAGATGCC-------TCTGCATATGTCATGCAGATA------TCAAGACAATGGTGTGGCCTCCATATTTGCTTTTGGTGCTTAGCCTTCC--------------GACCCGACGTACCAGC-AGACTTTCT---TATCAGCAGGACCCAGTCCTGACCCCTTTGGGGTGCTGAGGTATTATGTCTACACTGTGACTACACTGACCTGTCGGATAATGCTAGCATTTGATCTTTTTGGCCAACTAACATGACAACTGTACATGGCTTCAATGAATACTCGGGACAGTCAGCGTTAGTTGAGCCTACCACGTTAAAGAATTTCTTCCTGGTTTCTGAATAATGCTACTTAGCAATGTGGGGACTGGAATCTCCTGGTTTGTGTCTTAACCGAATAAACACATTCAGACAATGTTGTCTATAAATATTTACCTGGAAAATCATCTCCGTCGTTAGCAGAGAAACATTTGTCACAAGCAATTTTGAGAAG-----AAAAAGAAGAGTTGTGATCTCCTCCCCCCCCC--------TTTCTTCTGACTTTGGAAATCACCAGAATTGTTTCTTCTAGAGGTTTCCAAATGACACATCAGCAGTCTCAGATATTCGAGGGCTCCTCCTAGGAGCTGGGGCTG----CACACACCAGCTAGGAGCTTCCTGGAAATGAAGGAAAAGCTCCTGGCTCGGAAGAGCGTGATCCGGAAGCTGCCAGACACTCATTCTACCCTGTGCCTGACCG-ACAGAAGGGTGACTCTGAAATGGTCCTATAAGTCAGAGCAAGTAATTGGTTTGCTATTTATTCATTCACATACGCTTTCCTTAAACACATTGTGATAGACCCT--CCCCCAAAATAGCCAGCCGTGGTTG-GTCGGGATGTAGCAG-----GATACACACCTGTCTTGACTGTTCCCCGTGGCCCCAG-------GAAGGAGGCAGGAGTTGATAGGCTCTTGCAACTAAGCCTGGAAGACAAACTTGGAAAGA-AGAATGAAGAAAGCC-ATTTGGAATAGGACAACAGGGCCTATTGAAAACGTCTTGCTTGGGTTCCCCATGCT-AGATTGAGGAAGGAGCTTGTACAGAAACTCCATGTAACCAGCCCCTGGGAAAAGATCCATTCCAGCAGAGAAATCCTTAAAGGGTAAAATCCTTAAATCAGAACAGCCTGGGTG-----------------TTCGTGTTGGTGTTTTTGGAGTTTTAAAATA
s HiC_scaffold_1 132121466 1170 + 233722169 CTCCAGGAAAGGGATATTATTTGCAGCATTTCCCAAACCAGGCctattctttttctcctcataAAGCGCCTTGTAGAGCTGGAATGCCCTGTGCCTTAGAATACATTTTGAAAAGAGCTAACCCAGGGAAATTGTGACTCTTTCATGTCCACT---GGTTCTTAACTTTCCCCAAAGGCTGTAAGTACCTAATTTACCATTGAGTCTTTCTCGTTGTCAGCAGAATTTAGCCTCAACTTGTTTTTAGTGATGAGGTGGCACATTTAAACTTGTAATATATTGAACTATGTGAAACTGCTGATATTTGACCATTTTGAACTACTAAAATGACAGCTGCATGTGG-TTCAAAAAACAC----GACAATAAATATCACTGGAGTCCCTCAGTTTCAGGTGTTCATTCCTAATC------------------GTAA---------------------GCTTTTATAGAAAACTCATAAACAGTTT--ACCAGTG--------AAATTGTTATCTTG----TTTCCCCTTATGTTAGCAGTGAAATCCTTACTGCAGACGATTTGAAGAAAAGCTCAAAAATAACGTTTGGATTTTTCTCTCAGACCCGGGTGTCGCTGCTTCTGGTTTTTAAAGATTCCGgg------ttttaaagaaatttc---------------------cagGGATCCCATGAC--------AGAGTTGTGACTGGACTCAGACACTGGCTGGAGGCCACC---------------AGCTTCGG---TGGTGGGGGCTTCCCCACAAAGTG------------------CTGGGGTTGAGTGTGGAGAAGGCTGACTCTTGAATGGGGCTACAAGTCCAAGTGAGGGATTAATTTAATATTCTTTCCCTTATCTGTTCTTTCCCTCAACACATTGTGATGGATGCGGAAACTGAGCCCAGTTCGCTGTGCTGGCTTCGGAATGTAGCAGACACTGTTAAACACCTGC-----CTGTTCCCTGTCACTTAAAGGCTATCGAAGGAGACAGAAGTCAACAGGCACTCAGGATGGAGTGTGGTGGACACATCAGAAGAGGCAACATGGAGAGAGCCAAGTGGGAATGAGCGGGAAGAGCAGGCTGAGGGCTGTGTGT---GATGTCCTACACTGGGAGTGGAGGAGAGGTTTGCAAGGTGCCTTCACCTCACCTCCCTCTGAGGAGGACACCAGTTCAGTGAGGAGGTCCTCAAAGTGTGA----CTCTTATCAGGAGAGTCTGTCTGTCTTGCTGTACTGGAaatctattttgttatatttggggTTTTAAAATA

a score=79377
s chr3           145702687 5197 + 160039680 [encoded data, 5813 characters]
s HiC_scaffold_1 132124176 5308 + 233722169 [encoded data, 5813 characters]

a score=26713
s chr3           145708690 537 + 160039680 taaaaaaat--------aaaaataaaaaGTCAGCCTGAAAAACTTGTGGCTGCCTAGAATGTTCCAGACAGTGCTTTCTCTTTCTC--CGGCAGGCTTGATGTGTAAACAGTGTGAAAGGCAAGCATGTGCTAGAGGGATGCAGCCGTAATTACTTGTTCTCAAATGTTTGGCTAACCACTCCTCTTAATCCAACACACAGTCGTTTAGAACAGAATTAAATTCTGCCCTTTAGGCAGGATTAGCATTTGGAGTTTCTTGTTTCTGTCAGTTAAAATGTTCTTATCCCAATATTTGTACTTTTCCGTTGACGAGAAATGCCGAGCATGTGGAGGGAAACACGGAGAGTGTGGAATTTTTACTGTCCAGCTCATCA-TCTTATTGGTTTGTGGTCCGTCTTTACAGATACCAATTTTTAAGACCTGACTCACCCATACCTACTTTCAGGACCTTA-AAAGAGACTCCTAGACCACCTTCTCCTCTCACCAACCAAGTACACTCCCTTTGCCAGAAATTATGATTTTTAACCAGGAAAGTGTAAAAGAGAC
s HiC_scaffold_1 132130544 546 + 233722169 taaaaaaattttatgaggaaaaaaaaaggtaagctTGAAAAAAGTGTGGCTGAAACAACTGTTTCAAacagcattttgtttttctcttctgtgggCTTGATGTGTAAATTATGTGCGAGGCAAATATGTGATAGAGAAATGCAGGGATAATTACTTGTTCTCAAATGTTTGGTTCACCACGCCTCTTAATCCCACACACAGTAGTTTAGCACAGAATTAAATTCTGCCCTTTAGGCAGGATTAGCATTTGGAgtttcttgtttctgtt-gtttaaatgtttttatccCACTATTTGTACTTTTCCATTTAGAATAAATGCAGAGTGTGTGAGGGAAAACATAAATAGGATGGAATTTTTATGATTCAACTCATCATTCTTATTGGTTTGTGGTCGATTTTTATGGATACCAATTTTTTTAA--TTACTCAGCCATAAGTAgttacagaaacacagaaaaaaatggctgGTGCCCTCTCTGCTCTTATGAATCTAGTATCCTCTCCTGGCCAATAATtatagtcttttattttgtaagaGAAAAACTGAC

a score=53831
s chr3           145711721 4264 + 160039680 [encoded data, 4679 characters]
s HiC_scaffold_1 132134069 4126 + 233722169 [encoded data, 4679 characters]

a score=12665
s chr3           145719084 1119 + 160039680 tttttaaaaaaaagaaaatttaaaaatatGTATGACTTAACAAAGGGAAATCCCCTCTTGTTGTGATTCAAGTTCAGGTCATCTTTTAGGAGGGTCATTTGCATATTACTGGCCATCGGG-----------TCACTGGGCCACTTTAAAAAAGAAAAGCATTTTCTCAATTCAGTGTGGGTTTGTTTGtttgtttttgtttttgttttCCTGATACATTAACCAGAGAAAAGGACAA--GAATATTGTTTCAGGAACTGTCTTTCTTGAGCCACCGTGGACATAATCAGGCCAAGGGTCTGGA-------TTCAGCAATTCCTGAGCACTCTACATCTAATGAAACCTTATAAAACAATCTAGTGTTTATCTGGTGGCAGGGAGTGAAGCTGCCTCCTCTCCTTATGACACTAGATCAGACTGGGGCCCTGAGCTCCCGTTCCTCTCTTTCTTGGCTCTTTCATGCCTTTCCTTTCTAGAGGAATTGTTTTTTCCTCTTCAGAATTGTGTCCAAAACTCAACCAA-ACCATACTTCTCCCAAGAAGC---CAAGAACTACCACCTGGCTTGATTCCTTCTTTGTGCTGTATCTGCTTAGCTGTGTTCCTTTTTCACTTGGCTGTGGCTTGTACTGGAGTCTCAGAAGAATAACTATACTACTAAGAATAAGATGACATGA---TAAGAAACATTTGGGTGCTATTGTTAAA------------------------------------------------------ACGAGTGTTAGCCT-------CATACATGCCTGT---------------------------------------------GGAGG----------------TTCTGGCTTA--------------TTGGTCTGGCGTGGGGTGGGG-----------------AGGAA------------------------------------------------------GCACAGCCAAGTCTTATCACC--------------------------------------------------------AGGCAG------------------------------------------------------------------CTCTGGGCCATGTTACTGTGACACAGG-TCATCATGGCTGTTCCCTTAGTTCTTCAGTAGCACCATGGTGATTCAGGATGGAATAACTCAGAGGATTTTACTCCAGCCAAAG-------------GCCTGGGAGCCTCTGCCAGATTCTCATTCCCTCAACGATGCTTTGCTCTTTGAAAACCTTTTAATTTTATGTCATCGTCATTAAATTATAAAAAGGTCACTGAGACCAGTGACACTGTCATCTAGTTTTGTTATGTAGAGACTGGAGTATGTGTGTTCTATACTGATCTATTGAGAGTGGGTGGGACCAAACAGA----ACATTTGTTTCCTATAATTACAGACACACCGTCT
s HiC_scaffold_1 132141996 1368 + 233722169 tctttaaaatacaaaaaa-----gaatttcTATGAATCAACTGAAGAAAATTTCTTATGATTAT-ATTCAAAGTAAGGTCATCTCT----GGGATCACTTATCTATTGCAGTAAATCAAGGtaaacaaatttcatt-------tttaaaaaagaaaaaaattctcaaa---------------------------ttgattttcttt--ctgatgCTTTAACCCAAGAGAATTATAATAGAGTGTTGTTTCAAGAAGTGACTTTCCAG-GCAGTCTTGGTCAATATCAGGCCAAAGATACAGAAAGCTCATTAACCAA---ACAAGTGTTCTAAACTATACTGAACGTTACGAAAGAACTCAGTGGTGGCTTGAT--------------------CCATTCCT----ACA-------------GGGTCCTAAACTCAA----------TTCTCA--TCTCTCATGCCTTGCTTTTCTAGAATGATT------TCTTCCTCATTATTCTTTCCAAAATCAAACTGATAACTTCCTACTTCCAAGAAGCATTTAAGAAATTCCACCTGCTTTTATT----------GTATTCTCtgtttatctgcatttttgtt------gGATATAGTCTATTCTGGAGTACAGTAAGAATAATTAAGTTTTTAAGAATAAGATAATGTGACAATAAGAATCATTGGAGGGCCAGTTTAAAACAACAGCTTTCCAGACTACTATAGCAATTCTGCCTCAGCACATGTAGCATGTTCACAGGTATTTGTCTGGCTGTTTACACATATTTGTCTTTTTAACAAGTACAGCTACTAATTCTTGTCATCAATCACCTCCGGGGAACACTAATATCAACCTTATTAGCTTAGATTTAGGATAAGACTGATCTGGTTTGAGGTTGGGCTCTTTTGTTTATTAGCAggactttttttgttattttgttcatTAGCTGTATATAATAGTAGGCTAGTCATTATGTGCAAAGTCAAGTTTTTTCATCTAGAAAATGGAGGATTTAATTATTGTTACAAGAGTATTCTGAAGATTAAGCAATTCATGCAGAGCATAAGCACAGTGTCCAAGTGCTTTGTAAATATCTAACAATTATGTTTACATTTGCTTCTAATTTTCTTGGTTACACTAGTAAGATTCAAGATCAAGATGACAGTTTCTCTGGTTCTTCTatagcaccatggtgatttagaATAGGGCAAACTAAAAGATTTTACCCCAGCCAAAGACAAGCATTGAGAGCCTGTGAACCTCTGTCGATTTTTTGTTGCCTTGATGAAGTAGCACTCTTTGTTCTCTTTTAACTTACTTGTCATCTCCATTAAATTACAGAAAGGTTTTTGAGGCCAGGGACCCTGGCTCCTAGTTTTGTTACACAG----TAGATCTAGTATCCCATATAGTAGACTATCAATAAGGTTCATTATCTAATAGAGCACACACTTACTTCATATAATTATAGAAACATCAtct

a score=6101
s chr3           145720267 176 + 160039680 CTCACCATCTTTAAAATAAAATTAAAAACACCTTATGATGGAGTT----------------CTGGGCTGACCTGTCTGTTTGACCTT---TCCGGTGATGTACTTCTTAGATCATTACACTCCAGCAACACTAGTTGCTATGGCTGAGATACAGTTTAAGT-TGTACT------TTTAAGTATTAAAAGTTTGGTCCCCtgt
s HiC_scaffold_1 132143932 201 + 233722169 CCCATTGTGTTTAGAATAAAATTCAAA-CTCTTTCTCATGGCCTTGTAAGTCCTGCTTTGGCTGGTctggtctgtctgtctgacttcaTCTCCTGTGATTCACTTCCTAGACCATAACATTCCAGTAATGCTCATTGCTATGGTTTAGAAATGGTTTGAGTATGTCCCCCAAAGCTTGTGTGTTGAAAACTTGGTACCCAGT

a score=119081
s chr3           145726995 5293 + 160039680 [encoded data, 6001 characters]
s HiC_scaffold_1 132153206 5585 + 233722169 [encoded data, 6001 characters]

a score=20767
s chr3           145737775 742 + 160039680 TGCGGTTTTTGTTTCCTGGACCACCCTTCTCTTTGTTCCTTCTGATAGCTCCTCTAC---CGTGGATGAGAGT-------------------CTTTCCCATATCACCCTGCATT-ACTGCACACCACTGAGTTTCCCC------TCTTCTTTCCACTGAGTTTAAGAAGCTCAGAGAGCCATTGTACATTCACACGGCACCTCCAAGTGCTGGCATCCAGGAAGCATTTGATGGTTGGATGCATGAGTAAATACACAGAAGGGCAC------------------------------GTTTTAAAGACAGAAGTATTGTGGCACGCTCTCATACAGCACAAACCAAGGCTTAGTGGAAATGCTTGGCAGGCAGAGTCTACTTCTCCAAACTTTTA--AGTGCTCGTCAGCCTCAGGTTGATTTAT---------CTCGGTCAGCACAATTAGCCATGTGACTTTTGACTTTTTTGCAAACCTTTCAATTTCATAGCTTTTTGTGGGTGTGGCTTGAAAACCGTCATGTGTCT-CCACAGTAGGCATCTCCTTGACTGTCTCTTCTGTTTAACATTTTGCCTCTAGC-ATTCTAAGACATGAGTGACAGCTCTCAG-CCTGAGAACTTTCATCCTTATATCTAGAAAAACTCCTTAGACTTTATGGTGGTGAATCTCAGGT----ATCTGCCAAAATCTCCCTGTGGACAC----------CCAGGACCTCAGATCTACATTTGCTTACTGG---GCAGGAGTGACAGGAGGGTAGCCCCTCCCACTCTGCACTCAGAAGTCCTTCTCAATGGAAATTTTAGTTTTGAAAATGT
s HiC_scaffold_1 132166802 808 + 233722169 tgccatttgcatttcttggcTCATTCTTCTATTTGTCCcttttgataattatttttcaaactgaGGTAAGAGTgcatgcatgtctgtgtgtgttttactgtatcACTCTATATTTGTTGCACATCATTGAGATTCTCTATAAATTCTCTTTTCATCT---CTTAAGAAGTTCAGGGAGCCATTGCATACTCACTTTGCATCACCAA-TACTGGCATCTTATAGGCACTTGATGgttgaatgaatatatatatatatatatatatatatgtatgtatatgaacaTGATCTGGCTAAAGTTTTAAAGATTGAAATATTATCATACACTTTCATAAAATCCGAACCATGGCTTAAGAAAAATGGTTGGCAGGAGAATTATAACTCTCTGCACTTAAAAGAGTTTTCCTTAGCCTCGGTTTGACTTGTAAAGATGAAATCCGTCAGGACAGTTCTCCATGAGCCTTTTGA-TTTTGTGGAGAGTTTTCTATTTTGTAGACTTGTGTGTGTATGATTTGAAAAC---------TCTGCCATACTTGGCATCTCTCTGATGATctctgtttaaaaacattttatttctaacaAATCTAAAGCACTAGTAATAACTCTTAGTCCAGTAGACTTTCATCCTTATCTGCAGAAAACCACATTG---CTTATGGTTATGGTACTTGGTTACACATCTATC-AAATCATCCTGTGGAAGCAAACCTTGGGCCAAAACCTCAGATCCACATTTGCTTGCTAGACAGCAACAGGGACAGGATGATGAACTCTACCACACTGTAGTTAGCTTCCTTCCTCAAAGA------TAGTCTTTTAAAtgt

a score=10565
s chr3           145738757 260 + 160039680 CCCTTAATCTTGTCTTTAGCTCTTCTGCTGAAGAATGTGACCTTCATAATGACAGGTTGCCTAGGGAGATTTCCCTTCCCCAGAACTCTGTAGCAGCCCGATTGCGCAACGCCAATTATGGGAGCAGCTCCGGTCTTGTTTTTTGCAGCATGGACTCGTGTCTACCCACTGCCCAGTGTCTACAGTTTATCCAGATCGACAGTTGGGCGGAAGCTCTGGCTCCTCT-----TCAAGCCGTAATGCCTC-ACACCAACTTTCCCAAA
s HiC_scaffold_1  18122187 263 + 233722169 cccttAATCTT---CTGATCTCTCTTCCTGAAGAATTTGGGCTTCACTGTGACAGGCTGCTTTGGGGACTTTGCCTCTCCTAGAACTTTGCAGCATCTGGATTGTGCCACATCAATGGTGGGAGCAGCTCTGGTCTTCTTTCTGGCAGCATTTGCCAGTGTCTGCTCACTACTCAAACGATGCAATTCATCACGATCAACAGCTGGGCAGAAGTTCAGCCTCCCTTTGTGATCCAGCTTTGCTTCTGCAACACCTGGTTTCTCAAA

a score=23329
s chr3           145739244 2241 + 160039680 AAATGCTACGAAACTTTCAGAAAACAACCCCGACAATTTCTAGCCAAAATAATTCACT--------AATGG-GGCTGATTTGAGCAAATTTTAGCAGAATCAATAAGATGCTATTTAGACAGATTCTGAGAGATAGGCAAACTGTCATGGATCAACTCTGTTTATCCTGATCAAAAACAAAGGCAAAATTGATGCCCAAACCTCTATTCCTCAGACCTGCTTGTAGAAACATGTC----TTCAGAGTGAGGTGTTTCATAGCGT-ATTAGGTTAAATTGTCCTATGGAAGCCATTAAAATGT-TATATAGATACATGA---------ACCCATTT----ACATAGATAGGACATGAAAGCAGAGAGAGACTGGGGGAAGGGTTATCAGGTGGGGGGACAGAATCGAGGGTAGAAGGAGGAGCTAAAGGGAATGAAGGCTGTCTAAAACATGAAGGGCTTTGAAGAAACTGTCTTTCATGGAGCTCATCATTACACGCAA-TGATACCCATCCTTAAAAAAATAAACTTTCAAACAGTGTCCACTGACACAGCTGATAGATTAGAGTCTGGTTTTTGTTGGATTGAGAATCACGCAACAGCCGTGAGCACAGGAGGGAATTTGTTCTTCGTGACAAGTGGCTGGTGAGAGC---ACCCGCAGGACTTTGGT--TCTGACAAAAGCAATGGGAATCCCAGACAGGTCTCCAGGTCCAAGTTGACTCTTTCATAGTCTCCAGATTTTTCCCTCCTGGAGAAAACGCTGCCTTAATTAAATAATTAAG----CTTTTTAACAAACCGCTTGTTCTCCTGTGGTTTGCTGCTCTAATTACCTGCTC--------ACCAAAGTAATAA--AGGCCAGTTTCAGCTGCCTTGTTTGTTCTGGGTATAGTGCCTTATCTGTGGAATCCGTGCAGCCACACCTCACACACCTCACGTGTCT--CTGTTTGTTATCATTGTCCAAAAT-------------------gttcct------ccctgcttcttgcctctgcgcctgctctgacttct------ctcaatgattgaccgcaatctgaatatgtaa----------gccaaataaatcctgttaccccccaagctgctttctgctccttgttctcacggcaacag-----aaaGCACGCAAGGGCAAGAGCGTAGCACACATCCATCTGTATCGGCTACAAAGAACTGCAGCCTCTCGTGAAGGCAGTGGGGGACGTGTTCTGACGAAT---GATGGGACCCGTGTGTCTTTACACTGGTCACCCACGT-----TACTTGAGAGTTGTGTTGTTTCTATTATGCCATCCAGAAGCTGAAGGATGAATGAGGTAAAATTAGTCTTG-----TTAGGGATGGAgtgtgtact-gggattaacctcaaggctcacaagagctgagcagtgtttt-tcaccactgagctcatttGAAGATGtttgttatcttgggtgggggatgctcataaactgtctaagctggctttaacttcactgtatagcccaagctggtcttaaac----actcctctttcctcagcctctgggtagctggaatgatgagcctgtgccactaggcctggct------------------------------------------AAATTGAGCAGTTTTCTACACCTTGGTTGTTCTGGTGATCAATCAACAGGGGGAAAGACTG-TAATGGTTGCTAATCTGTACTTCAGGG-TCACTGTGCACTTTGGAGCTTGA------AC-----------ACTCGGAGTGTACTTACTGT----CACAGGAGCGCTGAGAAATTCCTGTTTCCATGTGTGAACTTTTGT--------------GGTAGACCTTCTATCTACGTGAAGAGGTAGAACAGCCCATCTTGGTGGAA-TAGCAGAGCTCAGAGGGACGAGCCTAAAAGCCAAAGTCCAGATCTGAGAACTGGAGAA-----------CCCGGGTCTTCTCTTCCGTCAGCCCTTTTCAGTAAGAGAACTGTCAGGGTCACCCTGGAATGAGTTATCCCTGGCAGCAAGT---CTGTCCCCCAAACTTCCTATCTGTCACTTGTTCAAAACTGTTCCTTGCCCTCAGTGGGGTACGATATTAGCTAACATGTTGCACACACTTCATTTTACTGCAACATTATGGACAGT-------ATATACAGCATATAAGTATGTAATATATGTTAAAA-----TAGAGAGCTACAAAGATAGAAAGATCAAAACT-CCCCCAAACTACCTATGGATCCATAAATTCGGCAGTTTCAT--TTACACCCTGAAACTACAGCCTTTGGGTCGCTTAGTCTCAGTGTACCTCCAAGAGAGAGTAGGAAAGGTCTAGCCTAGAGACAGCATTAAAGTGTACTGAGAAGTGCATTTCCACACTCCTATTAATATTACTTCTACCTAGACAA-CCATGAATTT
s HiC_scaffold_1 132167604 2189 + 233722169 AAAtgttgttaaaattttataaagcagATCTAACAATTTCTAGCCCAAACAATTCATTTTCCAAGTGATGGAGGCTGATTCTGGTAGGTTTCAGCTATGTCAACGA-ATGTTATCAAGACAGATTTT-AGAGGTAGACTCATGATCTTTAATTAGTTTACTTCACCCTGAACAGAA-TAGATATATAATCAATGCTTGACCACTAGCTATTCAAACATATTTACACAAACAGGATGCAGTTCATAATAATTTGTTTTCGGACTTCACTAACTTTAATTGTCCTATGGATGTTGTTAAAGTGTGTTCACTGACACCTAATGTGTTAATACTCATTTTTTTACATTACTAAGAACTG------TAGCAACACTGAGT------TCAATAAAcatttgagcacagcctggcattaa--------------------------tttcaaaataagtagCACGTTTGA--------------------TTATGGTGACATGTGGCTGAAGGCAAAACTCGAA-----------TCCAACAGAATT------------TGCTAGATTTTAGTTTTGATgtcattttttttacaa----------------aatttaaggATGAAAATGTT----------AGGAGCTGGGGAACATTTTGCCCATATG--TGTAGTCGTTTGGCA-----------------------GTCACCAAATCCA------------CAAAATATCTAGATTTG-CCGTCCTTGAGGAAACACTGtgttaattaaataattaattaaccTCTTTTAAAAACCAGTGGTTCTCCTGTGGTTTGCTTTTATAATTACCTCATCCTTCAGGAACTAAAGTACTAACTAAGCTAA------CTGTCTGGATTGTTCTCAACCTAGTGCTTTACTGATTTAATTCACCCAATCATATTTCATACAGTTTTTGTGTCTGTCTGCCTCTTGTCTTTGTCCAACATTGTAACATATCAGAAGGCAGACCCTGGGTAGCCTTATTTTCTGCA---GAGTCCACACAACACTATATGGTATTAAATGGTAGAACATTACTTT--TATGTAATGATGATGGTGAAAACAGAAGTCTGTAATAAG--ATGATGCATTATGAAGTTAATGTTTAAAATGACAGTTACTGAAGCTCTCACTGTGCTATTCACAGTGCTCAGT-ACCTGTTTTAG-TACTAAGAAGTTTAGTATGATGTGAAAGCAGCGATGAAAATGTTCAGTCAGCTTCTGACTGAACATGTG-GTCTTT----CAATTACCCATGTACTTTTGATTAAGAGC---GCTGCTTC---------------Aggct------tttttgtagtttttttggttttggttgtttgtttgttgtttttctacttgggactgaatccagggcct-------ttgcacagagctatatccccat----ctcttttaaaaatttataaga------------------cATGggcttgctaagttt--------------------cccaggctgggtttgaatttgtgatcctcttgcctcagcat---ggTTTCAga------------gtgccactgtgcctggatgttttcattttgttacttTAGCCAGAGGCTGAAAAGCAATGCAAATTAGCCAGTTTTCTACATATTGGTAGCTCTGGTGATAGGGTTATTGAAAGAGAAAGTGGTAACAATTGCTAAACTTTATTCTAGGGATTTTTGTGGAATTCAGGTTTTGATGGTCAACTGCCATCAATAAGTCAATGTGGATTGAGTACACAACGTAGAATCAcggagaaatttctttttc--tgtcagaAGTTCTATTCGGTTAGTTTGACAGAAGATCTTGTATCCACATGAGAAAATGAGGTGGTTCATCTTGGTGGAGCTAGCAGGCCTCGGTGGAGCTAGTCTTAAGCACAAGATACAGTTTCTAGAGCTGAGGAATTTCACTTTTGCTCTGGTTTTCCTTTCTGTCAGCC-TTGTCAGCAGGAAAACCGTCAAGGCTGATTTCGGATGAATCATCCTTGGCAGCATCCTCCCCTACCCCAAAACCACTCATTTGACACTTTGTGGAAACTGCT----------------ATGCAACGTTAGCTCAGATGTTGCACGTAATTCATTATACCATAAAATGGAAGAATTTCCATCTCGTGTATTACACACAAGGACAGATTGCATAATGAAAGCATATgggtagatagacagatagatagataaaaatttcccccaaattGGCTATGTATCAATAAACTCAGCAATTTTATAGTTAAATTCTGAAGCTACAGCCTCTTGGTCACTTGCCTCCAGTGTTCTTCCAAAACAGATTAGGAAATGTTTGGccta-agaaacatttaaaatataccaaGAATTGCATTTTC-TAGTTctattagtattatttctacttagaGGATCCAaaaattt

a score=27933
s chr3           145742933 1617 + 160039680 CAGAGTCACTCGACATAAAAGCACC---------GGTTTCTG-------------CTCAGGTAGGCTTTTGAGATTTAGAGAC--CAGAGAC-TCTGAGG---TGAACCCCAGAATAAAAACATT------------GTTTCTGTTTCAACCTGC-CTCAGAGACAGAGCAACAGGGT-TGGAACCGCAGAGGGTGCGTAGGATTGGGGGTTGCGGGGAAAGCAGAGCAGCTTCCTGAGATGAATTCTCAATGGTGTCACAGTTGAACCAACTGACAGACGTGTTGAAGTAGTAACAATGGTTGAGTTCCCACACAGCTCTGCAGAACGGGCTGCCCCTGTCATCTGCTC--ACTTCCCTTCCAAT-GCTCACAGTTGTTCCCCTGCGAGCAGCCATGTGCTCTTTGCCTTTAATTGGGTGTCTGCTTTACGGCAGTGTGGCAAGGACAAGGACAGAGAGAAGGATGGTGGGGCTCCCAGACAGTGGCTTCCTTCCTAAAggaacgcattctaagacatcccacaggcgcctggaaccaactgttatgtgtgccactttgcctctacctagctataaataataagaaagtttaatttgtgaattaggacacagcaagaaattaaccacagaaataaaatacaacagtgatgataatattctgcagtaaaaattatttaaaGTTTCAGAAAAGAGAAGAGAAGCCTGTCTTCTTAGACTCAGCGAGCGCCGT-GCGTACTGGAGTTTCTGGGGACATCCCAGGACACGTGGAGGGCTCTCAAGCTGGGTGCAGCAGATGGAGGCTGGGAACACCACATTTACCATAAAGGAACCAATCAGGGTTCAGCAACACAAATTAGTAATACCCAGTTGTCTGGTGTTCTGAT-ATCCTTACCCAGACCCCATTTCCAGAGTGTCTGGTACCTTAACACCGACCTGACCCTGCTGTTTG-----CAATTGTGTTCTACTTTTGAGACCAGTGAACACCACTGTAACACTCGG-AAGCAATTAGTGGAGTGAGCGCTGGGGCTGGTAATACTAGCACTCACCTAATTTGTGTAATTTAATTAAGCAATTAATTTCCTTCTGGCGTCTGTTCAAAAGAAAAACAGGAGGG--AAAAAATAATCTCAGATTATTAACTACTTTAAGCTTTATAGCTACTAAGTCTTGGGCTATAGCCAGAGATCTTTGAAAGGCAAAGAGTAAAATAAAGGAAAATGAAAATCACATCTGACCTTTCAAAAGGCAATGAAAGTATAATCTCATTTAAAGATCATATTGGCTTGAAAATATTT--------------------GTATTTCTTATAATTAATCATTTTGAAGCAATATAAGATTGTATAGAAT---------------TATACAAAGTCCTGAAGACTG-CCTTTGAAATATTCAAAGCCTTTTCTTCATCAACTAGTATTCAATAATACTCTCTGACAGTGCCTAGCCTCTTCCCTGCTCTCCAGCTTAT----CAATGAGCATTTCTGATGAAAATCAAAGCAATATTGTGGCGTGACAGACAGCATTATTGAGCTCTACATACAAGAAAGAAGTCATAGTACAAAGAATAAAGCAGCCGACAAGA-----TCCAAAAATTATTCAAACATCAGAAAGAGTTCTTGGTAAAAAGCAATGTAAGCAGGAAATCTCTCTCCT-TCCGCCTAAAGAGACAGCCCATGCTtt
s HiC_scaffold_1 132177571 1458 + 233722169 CATAGTCACTCaatataaaaacatcaaattGAGTGTTTTCCAGTAACTCTGTAGTCTCAA-TAGGTTAATTAGGTTTAGACACTTCGGAGGCATCTGAAAGAATGACTTTTGGAGCAGATACATTTGGTTATGAAAGGCAGCAGTGTGAGTGTGGGCTGAGAGAGACACCAAAGGGAAAGGGAATAGCTAAGCGTACGTGGGTTGGAGAGAAGTGGGCA---CAGAAC----TTCTGGGCTAA--TCTTGGCTGTGTCACAGTTCTCCTCACCGACAGAAGTGTTGAACCATCTACAATGGTTTCGTTCTCCCACGCTCCTGGAAAAGTAACTGTTT-TGTCACATGTTCTGCTTTCTCTCTTAATTGTTCACAGTTGCTCCTGTAAGAGTACACACATGCTCTCTGAATTTAATTGAACGTCTGCTTTAGAACAGTGTGGCAAAGAAA----------------------------------------TCCTCTC------------TTCTGAGGTTTCTGA----------------------ATGTGTACA-------------------------------------------GTGGGTACGGGCAT----------------------------------------------TTCTG------GACATACTTGA---TTCAGA--------------TTTGT-------------GTGAGTGCTTTAGGGCATGTGAGTAGCGTGGCACAACTAGATTCACG--------CCTGAAGCGGGCCATA-CAGATGGA-GCTAGAATCACCATTTTTATCCAACAGGAACCAAGAAAAGGTC--CAAC-TGAACTTGCAATATCCAGTTGCCCGGTGTTCTGATGATCCTAACGTGGACGCTGTTTCCAGAAAGCTTGTTACCATAACACCCAGCACATTTTCTGATCTGTGGCCCAAAGACTCTCTAC-TTTAAGACTGGTGAACACCATTGTAATGCTCAATAAGCGATTAGTGCTGCAAACAC-AGTCATGGTAATATTAGTATGCACctaatttgtttaatttaattAAGTTGTTAATTTTCTTCTGGTATCTgtgtagaagaaaaataaaagagacaaaaaataatcaCAAGTTCTTAACTA--TTAAGCTTTTCAGCTACTCTCCTTTGGTCtattgt---aaatgttttaaatg--------aaaat---gtaaaataaaaattatgcttaaagtatcaacaggaaatgaaaata-----ttttgtaaagaaaatattagTTTCAATATGTTTTAGAATAAATGAGTTTCAtcatattt-ttagaataaat-attatgaa-taatCTAAAGTTACATAGAATTTAGTGTTATCCATATTTATAAAGTCCTGAAGACTgtcctttaaaata-----------ttcttcaccgCCTGGCTTGTATGATTCTTCCCCAACAATGCCCAGCCTCTTCTCCAATATCCAGCTTACCTGGCAGTGCTTGTTTCTGATGAAGATCAGAGTGATACTGCAGCAAGGCAGACAGCATTGCAAAGCTCCAGGAGCATGAACTAAATCACAACAGGAAGGATCAGCCAGCTGAAAGGGTAACCTCGAAAATTAATTAAGATGTCAGAAACATTTCTAGacaaaaagcaaattaaagtcaaaacctctttcctctcttcttaaaGATGCATCCtatgattt

a score=20083
s chr3           145746230 1378 + 160039680 TCTTCTATATAATATTCTTGCCCATTTTC-ATCTAAAATGGTATATGTAACATAGTGTTCCCACAGGGAAATACTTTTCTAT-------------------------ATTTCCAAGGCAA----------CTTTCTTTTCCTTAAAAAATATACTTTAAAACATTCTTTCATTAAAGGCCTTTCTAATATTTTTTTTTTACTCTGAGCTGTTAGATGGCACTGCTAATTAATTTTTTCAATTATAG-AAATAA-------------AGTAAAA-----ATAACCTAAGAAATGAATAGCATAAAATATCTCCACATGCTGAATTAGAGA-------GACAGTCCAGTTTT------GCATATGCTAGCTTGACAGTTGTAATATTTGAATAAATTCTGTGAAAAAAATATAGTACATAGCTACATATG-AATCTGTT------------ATTTCTCTTTAGTGTTCACATAAAAATTAACACATGTATA-CATGAATATGCACACATTGT--------------ACAGATAGG-aatccagtgagaaggtg--------------gttggttaccc-----------------------------------------------ccataagtcttatgcaacgattacatcagtggacctggattgccagCATGT----TTTAAAACAAG-------------------ATAAAAAAAAAAAAGAAATCTC-----------TGTATTCTGGATACA--GCACAT-------------------------------------------------------------GAACTAACTCT--------------------------------TCCATGACATCACTAA---------------------------------------------------------GTTTTTGCTCAGACGCTCTTTCCGTTTGGCATGCTTTCTCCACA--CTGAGTAAATACCT---------------------------CCTCCTCTAGGAAACTTCCCTTGATTCTTTCAGACATATAGGATTTACATGATCATATATGCTTATGCTACATAGTT------CTTTACAGCATATGGTTTGTGAATGTTTATTGATATAATTGACTAATCC--------CCAATAGACCACACTAGCACCTGAACTCTTCAATAAGTAACACTAATTATATAAGTAAATCTGTAAGTATTGACCCTGATTTTAATTTACAAAGGATTAGTAAAACCTCAGAAAATTAAAGGGAATTTTTCTGAAAATAATATTTAACTCCTACATCAGCATAATAACGGAACTTGAAAGATTACTGTGATAGATT-------AGAGGTTCACGGTCGG-----TTTGTCCATCAAAtatgtttttctccctttgaatctgtccagtattgtacttgctttgatcaagatagtatggtgcaacccacgctgggttaagttcacaaagagctcataactggcccaagagcttccaaatctcacctccaaaaagccaactgccaagtaaggagtgagactatc---ctaagccaagcccacgtcacatgcagaggccCCCCGAGGAAGGGACCCATGT---TTAAGGGTGGACCAGGAACTCTGGGCAC-AGTGCTAAGATTAAGTAAAGCAGCCAGAAAATGGCTTCTCCAGCCCTCACTGCCCCAGTGAACTGCATGTGAGTCAAAGAAGAAGCGCCTGGA----CCTGTCC----TTCCTGATTCACGATCCAGGCACAGagc
s HiC_scaffold_1 132179072 1751 + 233722169 TTTTATGTATAATATTCTTGTTCACATTCTCCCTGAAATGGTATATCTA---TAGCCTTCCCAcagggggaaatttttttttttttttttttttttttttttttttgctttccaaggcaatattttttttcctttttttcttt------tgtttttttgaaaaattcttgtttaaaggcttttctaaa---ttttttccatttaaggTAGGCAGATGGCATcattaattaatattttcaattatagCAAATAACAATTGATTGGAGACTTAAAGCCTCATATACTGAAAGATAAATGG-ACAAAATATCATAGAATAGCATATTGTAGGTAACCTTGACAG--CATTTTTATGAATGCATATACTAATTTGATGATTGGGATATTTAAAC---TTTCCTGAAAAA--CTTAGTA-AGAGCTATGTATGTAACCTGTTTGAACacgaattattttcctttaactttCACAGCAAGATTAAAACATACATGGTGTGGGTATA-GCACATTGTTTCATATCATCTCCAGAGTCAGGTAATCTTGGCATAAGCTGAACTTGATTTATATGTTAACTACACTTTATAATATCACCTGAATGTGTTATACTTTCCACAGACAATGTTTTCCAAGAGTGATTTTCAACGATAATGTCTCTGAATTTGAGCAAGTGTCATGTGAGATATTAGATAGTGGGGGACACTATTCTAGCTATAAAAGAGGGAGAGAAGCCTGAGGGCAGCTTGTGTATGAGGGACACACTGCCCATCATTAGGGAGGCCCACATTTGTGGAGTCCCAGCCTTTGCCTGTGTCAAGACTCTCATCTGGGTGCTGACCCTCTGGTTTTTGACTCTCAAGTTTTAAAACAAGGTTAATAATATCACTAGCATTCCAGCTATAGcatattttcttcttcaaatgcTCTGTATTTCTGCTCACCTTGTATCTTTGCTTGTATGTTCTCTCACTTTGACTTGCTCTCTTCACAAACTTAATACCTACCCATCTTTCAGTTCTCAGCTCAAAGGTCACCTCCTCAGGGAAGCCTTCATGGATTTCCCCAGACGTTTGAGTTTCATGTTATTATAATTGTTCATGATATTCAATCTTTTTCCTTTACACTATTTAATTTAAGAGAATGTATATGCTTCTTTGATTAGTTCTTGTCTTCCTGATAGAAACTACTAGAAACTACATAAATCAGTATATACCATTAGTTGTATAAATAAATCTGCAACTATGGAATCTGGTTTTAATTTAGAAGTAATTAGCAAAACTTCAGAAAATGAAAGGCAAATTCTGTAAA---ACTATTTAA-TATTATAGTGGAATAATAGCAGAACTTGATAACCTCCTGTGACTGATTACGATAGAGAGTCCTATCATTGGAAAGTGGTGTCTAT--------TTCCTCTCCTTGTGAATCTGGCCAG-ATTGTGAGTGCTTTAATGAAGATAATATGGCAGAAACCATGTCATGTTGATTCTGTGCATAGACCTCAAACGGCCTGACAGTTTCTG---CTTGTCTTTAGGAAGCCTATCACCAAGTCAAGAGTGAGATCACCTTTCTGTGACAAGTCCAGGTCACATGGAAAGG-TTTTGGAAGAAGAGATCCATGTTGGTCAAGAGAAGCCAAGAACCACTGAGTGCTAGAAATGGGAATGAGAGCACCACTGAGGAAGTGGTTCCCCCAGCTCCAGTTGCCCCCTCTGACT--CTGTGGATCCCTAACAAATTACCCAGAAAAGCCTTTCCCGTATTCCAGATTCACAAAGCTTGCGCAAAAC

a score=18544
s chr3           145748132 2128 + 160039680 TTGCCACTATTTCTGTTTTCCAGGTGAGGCCTTGAGGCCGGGAAAG--CCAAGCAAATGTGTGACACCACACAGCTGCCCCAGAGCAGGGCTTTTAAATCCAAACTGTGCACTCCC-----CACCACCACAGCTAACAGCCACCTGGAGCAACAGAGTCACCGACTTTTGGAACAGGAAGGGGGCCTTATTTCATAAAAACTAAAGT-----CTTACGAAGTTGGGTCAATTAGAGGATGT-GAAGGTAATTCTATCTG-TGGGTCAGCTAATCCATGCTCTAAATACCCGAATGTAGGACCTAGCAGTAGGAGTACCTTCCTGTGTGCCAAGAGCCCCTGGGCTGATGCAGCACCTAGGGACCGAAGTAAAAGCAGAGATCCAGTTCTGTCATCC----CACTTGGGGGAGCTGGGGACAGGCAAGCCCTTTATTGAC----TGGTGTCCTTTTTTTAAAGCATGTATTATTGTACAA-----AACAATGTGAACAA---------CAGGCACTTTCCAGGAAACAGAACACAGGAGTAGAATCCTAAATA-AGAGGCCAGATGCAGAGAATAAACAGAAGCCAGGTCAGTGAACGGATGGAGAGTTTccatgaccaaggcaattcttataaggacaacattggggctggcttacaggttcagaggttcagttcattatcatcaaggagggagcatggcagcttccaggttagcatggtgcaggcctactccaacaaggccacacctcctaattgtgtcactccctgggccaagcatactgggagacaATAAAAGATAAAGAGTATGGCTTATCACCTT--CAGTTTGGAAAAATCCATTTGTCATAGGCTGCTCTttacaataatccaggga----gtcaata-gttcagagttaggtggtgcctg---tgtggagagagacacaggcagatttgagccatttt--ttaaggaggtaaatctgtcagaacatgctaatgaagcaacgtggagaccaagaacaaaaa-gaagTGCAGCAGTTAGGTCAGC------AGTAGCT----------------------------------------------------------------TGTGCAGCTACTG---------TGCTGTGAGA---------------------------------------------------------------------GAAGTGAAGACCTGGGTCTTGTTGGGATCAaggtggtattcgaagtcatgggcctgtattagggcacccaaactgactgacaagacgtctacataaaga-agaaaagCAGACATG-GATAGACGGA---CTGAAGAAAATAAG---TCAAA-----AGAAAGCCCTGCTTCagccaggcgtcgtgacgcacaccatacctttaatcccagcact-tgggaggcagaggacggtggatgtctgagttcaaggccagcctggtctacaaagtgagttccag-------------------------gaca-----------------------gccagggctatacagag----aaaccctgtctcaaaaa--------aCCGaaacaaaacaaaacaaaacaaaacaaaacaaaGAAAGTCCTGCTATGGA----------------------------------GGTGAAGCTTTTCCATGACAAGCACACACCAGTCCCATGCTCAAACTCT-TCTCCATCCATGTGAGAGCAAGCGTGATGGT-CTCTGGTGTTGTCAACTACTTTACAGATAGCCCCATGGTGCCTGTGTGGAAGCACATAGAAAGAGATATATGACCATCTTAACTGCAGGGAAACG------TTTTTCTTCAacacacacacgcacacacacacacacTTTCATTACCTCTCAAGTGCAAAATCCTTTCCTTCAAGCTATTTCTTCTCCCTG------TATACTTAAGTATGAAATTTCCCTTAAAAAATACTCCTGAAAACATAATGTCACAAAAAGCTCTGAGAAACTGAATAA-----ATAGAAGTTGGGAGCCATGCCTACCTCAGTGGGTGACCATCTCCTTAGAGATAATGTCACAGATCTCTTGTTAAGATTCAATACTTTTAAATGACCCTGTGTACGTTTTAGGATTTTT------TTTCAGTAGCCTCTACTATAGTTTTACAGTGTGGT-TATGACTCTAGCATGGATGGGCTATTGCACTAGGC----------GGATAAGCAGCAGTGCAG-------------------------AGAGATTGGGCGTACGGACTATGCATGAGGAGGTCGGA-------------GTGCCTTGGAG------AGCGTTTATTGCGTATACTCTATTCATCCTGTCTGTTGTAGGCTTTGTTGTATAAAAGGAACTGGGCACTTTGAATGTAAACATGGGCA-TTTAACACATGGGCAGACGGATACTTTGGTATTGATCACGGTGTATGCCAT-AGAGCACGA-GGCTATTAGTACTG
s HiC_scaffold_1 132183459 2268 + 233722169 TTGGTGTTATTTCCTCTTTACATATGAGAGCCTGAGGTTGAGAAAGATCCAGTAAATTGTGCAGTATCAGA--GCTGTAACAGAGTcaggattc-aaacccagcctgtgaATTCTCTGATACACCACAACAATTATCAGGAATTTGGAACAATAGGATCATAGATTCTTAGAACTGAATCTTGG---TATTTTATAAGAATTGAAATTCATTCTTAAGGAGGTGGGCTGACGGGAGAAGGGAGATGGGAATGCTGTCTAATGTTTTAATCCAGCCATTCTTTAAATGCCTGAATTGAGGATTTAGCAGTAAAAG--ATATCCTATCTACTAGC--TCCTTAGACTAGTGTATCA--TAGG------AGTGAAAGTACAGAAATGGGTGT-TCATCTGCAGCATGGGAGAGAGCTGGGGA------AGTTTTTTTTGGAAGGAGTGATGCCCCTTCT--AAAGGA-GTCTGATGAGAAGATTAGGAGCTACTTGAGAAGAGATGGAGTCAAGCACATTCCAGGAAATAAAGCAC-------------TATGTGCAGAGGCCATGT----------AAGAAAAGGCAA-TCAGAAGGAGGATGGAGAGTA-----GACAAGGGCCA--------------------------------------------------------CGTCATGGGCGTGGCGTGTC---TTGTAGGTCA-------------------CAATAAG-----ACATCTGGGCTTTATTGCT----------AGAGTCCTGAG-GAGGATTTAGGCTAGAGAGTACA--CAGTCAGCTTTGCAGTTTGGAAACACCTCTTTGTCA--GGATGATCATCATGGCTCCCCAGGAATCGCGTTATTGTACTCAGAACTAGGTGGTGGCAGGAGTGCATAAAGAGACATGAGTGGATCTGAGCCATTTtaagcagacagacagacccGTCAGAAAAAGGTGTTGATTAAATGTGGAGGCAAAGAAGGGGAGCAAAGGACACCACTTGGATTACCCGCTTGAGTAACTGCCTGTAAAGAATAGAGACGAGGAAGAAAGTCAGCCGTCCTGTGCCAAATGTGACAGATTCAGGTTTGCGGAAGCTGACTTTGAAATGCTGTGGGACAGAAAAACAGGGCTATCTTCCAGAAGGTTCAGTCTGAAGCTCAGGACTAGAAATGAAGGTTAGGACTAGAAATGAGAGTGTGTGCATTATGGATAT-AAAGTGGCATTTGAGGTCACAGACCTAGATTACCTCACCT-----------CATGAAGGGGATGTAAAGTTGGAAGAAAAGGCATTCGAGCCACAGAATTCTGGGAAACATCAGCAtttaaagagggagaaaa---------agccAAGCATTGTGG-----GATATTCCTGTAATCCctgaactctgggaagctgaggcaggaggatttc-aagccTATGCCCATCCAAGGCTACTTAGCCACTTTGagtatcctgtctcaaaattaaaaatacaacaaaagtctgatgatgtagctcagtgccaaggccct---gagttcaagacTCAGTACCAAATAGATAGATTAGCTACATAGAGTGATAGATAGCTAAAagatagatagagagacagagtatgggtacgagagagagagagagagagagagagaaagagagagaaatttccCTAGGATGTGTGTATTCAAATGTTATGCTACAACTATGTGTTCATAC-TGTAAGAACAA-CACGATGATTCTCTTGTATTGCAAACTTGTTATC------------TATTTCTCTTTATAAGGAAATGAAGGGA-----ATAACAATTTTAACCGTAGAGAAATGATTCCCTTTTTCCTC----------------------TATATTTGCATTGCCTGAAATTTGAATGGTCTTTCCCTTCAAGCTATTTCTTTCCCTTGCTAATATACATTTAAGTATGAAATAGTTACTAAAAA-TACTTCTGGAATGATAATGTCACAAAAAGCTCTGAGAAACTGAATAGTCATTATGAAAGATGAGA-CCATGTTCACCTCTGCGTATGCCCAC--------AGTTCATCCCACA-----CTTATTAAAATTCAACACATTTATGCAGTACTTTGTACTTTCCAGGATACTTTGATTATCTCATTAGCCCCAAAAGCAGCTGT--AATGAGGCAGATGACTGTAGTGCCAATGGGTTGTTACACTATGCTAGGAGAAAGTGATAAGCAGGAGAGAAGGATAGAGAAAGAGctacagaaattcagagaagagaCACACTGCTTGTGTGGAAGGATATCGGGAGCAGCACGGGCTGAGCTTTAAGGGCTAACAGCATTTACCGAG----CTCT-TACAGTGGGCCTGCCATGTGCTACCTCATGGGAAA-GACTTGCGTGTTTTGAATGCAGACATGGGCATTTTTACATAGAGGTAAATGAATGTCTTGGCATTCATCATAGTGGTTGGCACAAGAGCACAATAGCTATTAATATTG

a score=35688
s chr3           145754120 2800 + 160039680 tgggtgaaagttagccagaggaatgtggccagaag-actgtgcatccttccctttcaggcctggcccaacatacctgtcacacatgtcaccctatgtccttcctccT-----------GAGGAAGGTGAGCACAGAGACCTGGGACGTGTGCTGACGTGATG-GAACAATAAAATAAAAGACAGATCTTTGATGCTGTTTGGAGAAAGAGCTGCAGAGGAAGGAAT--GCCAGTGTTAGCC-----TGAGAGACCAAGAGGCACACTTCAGTCAGCTCGCCCTGCCACTCGGGGTGACTCGCTTGTCATTGTCACAGCCGCTAGAGCTACCTCAGTGGCACTGAGGCGATTTACCTACTACTGTTCCCTTGAccgtgtctctagcaccttgcctgttcattcct-tagaattctccttccctctttcaataactcacatcctaagagattattcaaggcctaagccaagttcaccggccttggagcagctttcttccactcctggcagccatagtgatagc-----------------tcttcccttcgatgcctacagtgctttatcat--agatccttcttgtgtgtttatcatagctcgagctctacata-tcttgggttgtttttttttctggtaagatttgagcacttcaaggtcaaagatcatctt----gtgctatttgcatTGCTCTGAAGTGTGTGGTGTGGTGCTGTGCCTCGAGAGTTTCTGATAAATATGCATGAGGAAAATGAACTTATAGATGTGTTAGCTTCAATAAGGTCCATTTCCCCAAGAACAACCTTTCACTGCTGAAGCATGACAGCATGCAAACTCGAATTCACTGGCTTTGGGTGGTTTTTTTACTGCTTTCAGCAGTAGACA--TTCTAATGTttcttgacaactgcttagagcagacagaaggcactcttatcaaatttcagatggcagaggctagaagtaataaataatgtacgagatgacagaatcaaacttagacatgttggaatgaagcagatgacattaaataaggataaatgacaaaattagattcgcgcaaaaaaAAAAAAAAGCAAGCTCTGCAATTCCAGTTTGGAAAAAAAACACAGACAACACCTATTTATGGG-GAAGATTTACCAGCTCTGATCATACTCTAGGTTAATGCAAGCCGTGAGTGACACACAAGGCCCGGTCCAAAATTTGGTGGAGAGCATTGGGTGATAGA-AAAATGCTGAGGCTCCAGAGAGGCACAGACATGAGTAGTG---TCTAGGTGATGTTCCGTTGAAGGTAGACACAACCTTAGTGTTGAATAAAGTTCACAGAAGCAAAGAACCAAAGAGAAACAAAGCC---TTCCATTTTAACCTGAGTTAGCTAGACACATGGGTGAGCTTTCACCTTTGGAACACTGCTAGGACTCTTCCGTCTAAAA--ACTATTGTGTGGTTTTTTACATATGGTTTTTTATATTAATCTGGTGCTAGTAG-GCAGGCTCACCCCTGGAGTGTTCTGATTAAGGAGAAGAACCTAGATGGTCTTAGAGGGCTTGCTTCTAATGAAGCAAGTTGTCCTTCGTTGAAGCCCTTATTTTAGAATCTGGAAGATGCTATATCAACATAAACTCAAGTCA-TCtgtcttagttagggttttactgctgtgaacagacactgtgaccaagacaactcttatagagacaacatttaattggggatggcttacaggttcagaggttcaatccattatcatcaaggtgggaacatggcagcatccaggcaggcatggtgcaggaggagctgagagttctaactcttcatctgaaggctgctaagagaagactgacttccaggtagctaaagctcatgcccacagtgacacacttcctccaaccaggccacacacccaaatagtaccagtccctgggccaagcttatgcaaactaccacaCCATCCTTGGGCTAAGGGAGAGAAGGAATCCCCTATCCACTGTGGGCTCTTCTGGGACAACCCCTATAGGATGGCATAGATGAACTTGTTCCTGGAAATTC-------TAAAAGCTAGTATCAGAGCTCTTGTAAGATGGCTGGAGCATGGGCCTTGGCACCAGAGCACTGGGGAAATGAATGCATGATTGACAGAGCCTAGCACCTATCAGAGATGCACCTGTCATGGGGTGCACCTGTCATGGGATGTACCTGTCACCAGTGCACCTGTCACA--GGTGCT-----AGTACTTGGACTGCAGGTGCAAGCCACCATACCTGGTTCAAAAATATTATTCAATGATCAAAATGATCTTTAAATTAGTCGTATGTTACAGAACACGAGGGAGAAGTACAGCCTGGATTTTGAAGATGGTCCCCTTGAGAAGAGCATATTCCCATCTGGATTAAACTGCCATCGTGTCCGTCAGTCAGGCGTAGGGACAATCATCTTTTGtctgggtgtcttagaagggatatggccaagttggttttcatcaaaaggaagaacatgagaatgttaaaaggactgtgaaaccaaatcagaagctgcttcctgctagatcaggcttcaagagtgcaggggtcagga--------cagactgcagagataa-----------cagcactgccttcaaatatgtgaatagcggctt--gtgaaagaacg--------ctgccccttt------catcaggaggcagaactgagaccaaggggattgaagttCAAACCGAAGAACTTCTT---AAGCAGGATAGATCCTCAGACATGGAATATTTCTGGTCTTGTTAAACAGGGCTTAAAATATACAAGCAAAAGGTTGACGCGGATACTGGATGCCAC----AGCTGGGTTTCAAAACACTAGACAAAATAATCAAATGAGAGGGTTTCTAAGGTCACAGTCAAAT
s HiC_scaffold_1 132187639 2218 + 233722169 TGAATGAACATTAGCCAGAGGAAGGTACACGGAAGTGATATGCATCCTTTCT----AAGACTGGCTCATAAAACCT-TCACACATGGTGCCAtatgttctttctctttccttcagcATGAGGAAGATGAGCATGGTGAACCAGG-----TGCTGGAGAGTTAAGAGTCACAAAACAGGAGCAAGGTATT-------GCTTGGAGAA-GAGCTG----AGAATCAATCAGACATCTTTAccaaattataaatgaatgaGAGATAAGCTTCTTTCAGCTAGA----------GGAATG---------------------CGACTCGAGCT-------------------GATCTACCCACTG----TCCCTTGAACATGCCTCCAG-ATCTTGCAAATACTTCTATCTAGAATCTGAGTTTCCT--TTCAATTACTCACATCC-GAGCAATTATTAAAGGTCCAAACCAAGTCTAGTCACCT-GCAGCAGCTTACTTCAGCTTCCAATAGCCACAGTGACAAcgactgtctctctctctctctctctttgcttgtCTGCAGCACTTTGTTATCTATACCTTCCTTGATCACTTAT---AGTGTAAAATCTGCACAATCTCA---------TCTTTCTAGTGAGATTTGAAGCTTTCAAG-TCAAAGATCATCTTTTCCATGCT-TCTGCATGACTCTGAAGTACACAGCATGGTGTGGCATCCTGGGAATTTC-AATAAATAT-CATGGGAGAAACAAAC--ACAGATGTATTAAGTTCAATAAA-TCCATTTTCT-AAGCACAGTCCTGCCCCGCTGAAGCATGACGGTATGTAAACTATAATTTACTGGATTTGA-TGTTTGTATTATTCTTCTCACCAGTATACAGATTCTAACACTTCCTGACAACTGCGTAGAGGAGACAGAAGACATGCTTATCAGATTTCAGATGGCACAGACTAGAAGTAATAAATAATGCACAA-ATGACAGA-TCAAAACTAGACAAGTTGGAATAAAGTAGGTAACATTAAAGAGAGATAACT-atgaaattagattttt-------aaaaagtcatccaGCTTTAATATT-------------GAAAGACAGAATTCACCAATTTATAAGAGGAGATTTTCAGGGTTTAATCGGTTGCTGGGCTGACACTAGCCCAGAGTGGTACACATGGTCCTGTTCATG-TTAGGCTGAGGG-ACTAAGTGCCAGGCAAAATACTCAGGGGTCAGTGAGATACAGACATAAATGAAGATTGCTAGGTGA------ATAGGAGGTGGACA------TAGTGTTGAGTAAAGTCCACAG---CAAATGG-----GGAGAACaaagtcctatttttttttaacatgagtgAGCCCAGCATATGTGTCAACTTTCCCTTTTCAAATGTTGCTGGGAAGCCCCCATCTGAGGTTACCATTA-------------ACACAATATCTGACATTAA-CTAGTACTAGTAACACAGGTT--------ATGTGGTCTGT---AGAAATAGCACTTAATAGGTTTCAGAGGTTATTTTACTGTTGGTCCTA-TTGTCCATGGTCAGAGCTGTTTTTT------------------------------ACTCAAATCCCTCCATTTCAG-----------------------------AAGCCTAGAAAGGCTCTGATGG------CATTT-----------------------------------------------------------GTAACATCC------------------------------------------------------CTAAGAG-----------------------------------------------------------------------------------------------------------------TCATCCCTAAAGGAGGGGAAAGAAGGCACAGCCCATCTTCTCTGAGCTTAGCTGGGACAACCT-TCTAGGATG-TGCAGATAGACTTGCTTCTAGAACTCCCACTTCCTAAAAGTTAGGATCAGAGTTCTGGCAAGAAAGCTGCAAGCTGGGCCTTGGCACCAGACCACT-GAGAAGGGAACACA-------------------------------------GTCCTAGGCAGC----GTCAATAGAAG--CCTG--------GCATCTGGAACAAGGGTGCTGCTAGAGTCCTTGG------------------------TGGT---------------------------------------------------CAGACCAAACGGAAGAactgttggtttggttttg--------------------------ttttcaccaga----------tattgtg-----------------------------------------atttttaaaaggatacaGGCAAATTGGTGTGTGTCAAAAAGTAGATGACCAGAATGTCTAAGTGACTTAGAAACTAAATCACCAGTTGCTCTCTGTGGTTCCCAGCTCCGGGACTGGAAGGGATGGGAGGGTGGGGGAGGTTGGTGAGGTGCTGTGTGTGGGTCAGCA-------CAGATAC---AGCACCGGCTTTAGTAAGAGAACGCTATGGCACTGCCGCTTCAGGCAACGCCAGAAGGCAAAATTGGGACCAGTGGGATTAAAGCTGAAActgaagtgtttttttaaaaacttcacatCTCTTCAGAAGTGGAACAGACTGGGAC----AAAGCAAGGTTTAAAACATTCAAGTAAAAG------------ACTCAATGCTATTTTAGGTGGAACTATGGAACATTAGGCGGGA-AATTAGATAAGGAAGTTTCTaagatttctttcaaat

a score=54471
s chr3           145758995 4546 + 160039680 [encoded data, 5024 characters]
s HiC_scaffold_1 132191028 4198 + 233722169 [encoded data, 5024 characters]

a score=21816
s chr3           145764012 1324 + 160039680 AATGTGTGTTTAGGTTGACAGTCCC-TTATGTAAGGACATATAGGCATCAGGACCCGTACGTTTTCGCCCTGAGT-----------TTCTTACGTTGCCTCTAGAGGCAATGTGAACAGCAAGCTTGTGCCGAACAGTAGCAGGTAACCAAAGCCAAATACTCAAGTGTGTG-GACCCTGAAAGATGGCCCTGTTGCCA-CACTTGTTAAAAGTCAAGGAAATCTAGATTCAATAACT-TGGGTAAGTAATGTAACTAAAGTCCCAGACAACTTATAAGTTCCAGAAATGGAGTTTTCCTGAAAACACAAGACTTGTTGCTTGCTTGCATCAAGTGGTTGTTGCTGGTGGCTG--AGCCCCACAGAGCATTCAACAGACACAGACTGACTGCTTGGGTTCCACTTTACCCATTAGTA---------TTATGAAGGACTTTAACTAAGTGATTCATTTTC-TTCCTATCTCTCATAAAGGAGAGCAGTTTTGTTTTCATCTTAGTTTAAAGGTAATAATGGCTAGTAATGTAACCTGTCCTTGGGCTGGTTCTGGCActgcagagatagctcaacaactaagaacacttgttgctcttgcagaggacttag-gttcagttcccaaccccacgtgatggccaactcctgggatcagacaccattttctgacctccagcagcaggcttgtgctcatagttacatgcaggcaaaacatgccctcagacaggtaaaaATGAGTCTATAATAACAATGCCATTTATACAAACCTCCTAAGTTGTCCTGCAGAGTTTGTTCATAACTGTTGTAGATGTTTGCTTCTTACACACACACGCCCTCAAACTTCCGTGTGACTGGCCATACCGAGAGACCCCGCTGGCTGTCACTGGTGGGGAGGGGCTGCACTGGGGAGCATGCTCTCAACCCAGCTGCTTCTTTTCAGG---TCTCCTTTTCAACCTTTCTACATGGGCTTGGCAGGAACATTAGAAAATTGGTGTGTATCAGAGACAGAGGTGTGGCCAGGAATGCAACCTGTTCCTGTGCAGCGGGCCTCAAAGGCTTTGGAAATGAAGTACAAAACAAAGAGCCAGGACTGACTTTCATTAAAGACCATTAGCTGAAAACGAGCTCCCTGC------------CACAAATATAGACCCTTTAGAGGA----GAAGGCAGG-----ATGGCTTGCAGCTCACACATGCTGGGCCATTACTTTTGCGTGTATTTGAATTCTTATTAAGCTCAAATTTATTTCCAATTAGTTTTATTATAGTCACGGTAGGAATCTCTCTATTATTATGTTAGCCATGACTACAGAAAAATCTAATTAAGATCTGGTGGAGGAAAC--GTCTGTCTCCAACTACCTT
s HiC_scaffold_1 132195238 1184 + 233722169 agTGTATGGTTAGGCAGATTGTCCCCTTTTATTAGAG----TAACTGTTAGGACCTACAGATTTTGTCTGTGATTAGAAATAAGCATAATGATGTTGATCCCAGAGGCAAGGTGAACATCAAGATCATACCTAATAGCAGTAGCTAACAAATGCCAAGT-TTTAAGAGTGTGTGACCCTAAAAGATATCATTACTGTTGGCACTGTTTAAAAACTAAGGA------GAGTGAGCAACTACAGTTAAGTGACTTGACCAAAGTCacacaaaaataataagataCAGAAATGAGGTATTCAAGAAAAGA---------TCATTTTTTTGCTTGAAGTGTTTACTGTCAGTTGTAGTTAATCTTA---AGCATTACATAGATCTAGATTAACTACTTGAGTCCCACTTTACATGTCAATGATAAATAATCTACATGGGACATTAACaag------cattttaattcttttttctcacaATGAGAAA-----TCATTCttgacataatttaaaaatattca--gtcatCACACAAACCT---CCTAAATTGG----------GCAGAGTTTGTGCATCA-CTGTGT---CTTATTTCCT----AGTGGAGTGGGTGTTATCTTTTTAAATGCACATTTCGTCAAACTTCTG----------------TTTAACTTCAAGTAA---------------GGATAC--------------TGCCCTAAAACA----------------TAAT--------------TAGAAATCACACTGGCTGTCAGGGAGA------TGGGAAGTGATGT-GCTGGAGGCTCTTTACATGGCAGCAGATTAAAGGTTCTGGATAAATTGTCACCTCCA------------------ACTGGTTGGAA------------------------------CAGCTGCTCCTTTTCAAGATGtttctttttcagcttttctgCGTGGCCTTGACAATAACATTTGGAAATTGATATGTCTCAGAAACTGGGATGCATCCAATAATGTAATCTATTGCTA--CACTTGATCTTAAAAgccttgaaaataaagaatgaaatgatGAGCAGGGAGTGACTTCTATTAGACACTATTAACTGAAAATGAGCTTTCTGTGGAGGTTCTTAGAATCATTAGAGAATCATTATAAGACTAAGAAGACAGGTCTGGATCCCTTATAATTGAGGTATACTGGAAAATTGCTTTTGCATGTATTTGAATTCTTATTAAGCtcaaatttcttcaaaattactTTTGTTATAGGAATGGTAAGTATCCCTCCATTA--ATATAAACCA-GACTGCAGAAAAATCTACTTGAGACTT--TGGAATAAACAGATTTACCTTCCACTGCCTT

a score=69791
s chr3           145765783 6121 + 160039680 [encoded data, 6584 characters]
s HiC_scaffold_1 132196477 5664 + 233722169 [encoded data, 6584 characters]

a score=107626
s chr3           145772431 5116 + 160039680 [encoded data, 5640 characters]
s HiC_scaffold_1 132204328 5357 + 233722169 [encoded data, 5640 characters]

a score=43983
s chr3           145778129 2293 + 160039680 TGTTTGCTTAACTCCTGGATCCATCCTACTAAACACAGCTCAGATGTTTATC------ACGTTCATAGACCTCCCAGAGTCACTGAGACCGATTTGCTCTGTCTCAAACACTACT----------TCATTGTAGTGAGTGAT---CCCCTGAAGCTCCTTCTTCATCTTCTGTCAAGGTTCTTCCCACAGCGCCTGTGACCTTT-----------------------------------GGCACACAGTCAGTACTCAGTGAA-TCAGTAGACTCTTCAGTACAGTCTAGGGGTCCCTTTCTTCCGTAGGCCCACCCTGGTGGCTGCTGCACAGGTGACAACTTTGGAATCATAGGAGGAATAGAAGATTTGAGTTGAGGA---CCCCTG--------AGCCTCTCTTTGTTCTTGGC---TACGTGACTTCAGCCACAGCTCTGCTGAGCC--AAAGTTTTCTCATATGTGGGG-AGGACAACGGTTCTTG---------------------------GGAAAAAGCAAGGGCGGGGGGAGCTGCCACATTGGATT------GCAGTTCATAAGCAAAATATCACCACGGGCAGCCATGTGGAACTTCAGAAAGTAATTCCGCCTAGGTGTTATTGGGGACAAACCTCTCTTCCTGTGAACCCTGCTCTATGGCAAA--TGTCACAGAGTTGAGAGCTATTGGATGGGGAAGGAGATATTGGTCGAGTGCCATCATCATTAAG--------GTAGTACAGAGTTC----CCTCAGCCAGCTGGAAACAGAGCAGCTACAGTGTGCTTGctctctctctctctctctctctctctc------tctctctctctctctccctccctctGTGAGTGTGTGTGTgtgagagagagagagacagaaacagagagagagagagacagagagagggagacagagagtgagtgtgcaggg-accctcAGCCTGATGCAGGGTCCACAGCCCCTCTACCTATGAACCCTACAGAATGCGGCTCCTTTTGTAA-----TCCTCTCATT-CTGCCTGTGTAC---AAGGATAAACCTGAGCTCAGAGCGGAGCTGTAGAACTCCAGGTTGGGTGTTGCTGTTCTCCTGAGTGCGTGTCT----TCCTTCTTTTCTCTGTGTCAG-CAAGGCAGCCATCAATGAGGG----GGTGCTGTACAAATGGCAGTGTTCGTTTGAAGAGTGAGTTGTGTCTTTATTCAGAAGCTGGGGGGGGGGGGAAGAAATGG-AAGTCTTTCAAGCTATGGAGC-TTTCTCAACTAGTGAAGgagatttgtctgtttctctgtctctctgtctgtcactccatctctcggtctgtccctgtctgactctctgactctctctctctctctctctctcttgtcccttccctccccctctctcATTTTTCCAGTCCTGTCTTTCCTTGGCTTCAA-CATGCTCAGCAGAGCCTTGCCAGCTTTAGTTGGAAGAAATATATTTCCGAGCTTAGTTGGACATCAGTTTTTTTTGGGCTCTGCCCAGACTCTTGACAGAGAAGGTAGTGTTAAGGAGGTTGATGGTGTCTAGACACTAAAATCAGAAACTGTGTAATTTATGTTGTATTACAGACATCCACTTCCCGGATTGGAAAAAGGAAACTGGCTTTTATCTAAGGAAGTCACATTAAAACCCCAAACCCCTGGGTGTTTCTGACCTATGAAAAATTGAAGTTTGA--AGCTTTACATAACATTCTCCAGCCCCTTCAAGAGCAG------------------CAGTGTA-----TAGAGCAGGAGATGAGACGTTAATGTC-------TAAGAGAAGGCTCAC-AGGCTCGCACACACTCCTTCTTAGCCACACCCCTCTGGTTAGAGCCCTGCAAGACCACAAGGCAACTTAGAACA-----CATCAAGTTCAGAGGGATA-TGGAGAAGCAGAGAGGAGAG-GTCTAAGAGCCAAGGAGGACTGAGGTTTTTAAGAAGAGAAAAAAGATAGAAAGTCAGACTTAAGGATAAAGAAAAAAA----------------------------AAGCTCAA----------AATTAAAAAATGTGCTTTTGATTCAAAACAATCATAATAAGAAAAATTGTATAGAGTCCAATTAACCCCACAGTTTTCTGCATTTTTGTTTTAGGTTACTTGACGCTCACAAATTCTAGATAGCTGATGCTCTTTACCTTGGAGAACAATGAACGATAAAATCTGAACGAGCAAGGCAGACATTACGTGTTGCTAAATG---CTAAAAGCCCACGGCGACTCTTGTTTTGTTTGGACCTGGACAGTCATCCAGGCCCTGCCTCAGA--CCCTGAGATGGGTTCAGAGAAGCAAGCCTCTTTGTGTGGAGCCAC----AAGGCTCCTGCCTGCCAAAGACTGGCCTCCCTGTTGTTTCAAGTCGTGGAGTTCAAATGCTATCATTGTGATAGTGTTAGGAACTGAGTCAGTGCTGCTGAACTGCTTTAAAAAT
s HiC_scaffold_1 132209704 2268 + 233722169 tacttgctAAACTACTGAATTCATCTTACTAATCCTAGCTCAGATGTTCTCCCTTGATGCTTTAATAGCCTGCCCA-AGTC---Gtggcccatctgctttgt----gatgCTACTCTGAAGGTAGTCACTTATGTGTATGATGGTCTCCTGCA-CTCCTGCGTTATCTCCT-----------TTCTGCAGCATTTGTGACATTTTCACTTCCAAGCCTTCAGCACTGAGCACCCTGAGAGGCTCTCAGCAAATGTTAGTTGAACTGAGTCTACCATTCAGTGCAGTTTAGCATTAAGCATATTT-GTAGGTCCTATTCTCCGGGTCATTTTTAAGCAGCAGCTTTAGAGTAGTGGGAAAAGTACAGGACTGGGGGTCAGGAtgtctcctgctttttaaaaCCAAGCTTTGTTCTTTATAAGTGTTTGACTTTGGCCATATCTCC-CTgagccttgattttttttcatatgtaaaacaggataaaaattcctgcttctcaaacttttcatgaagatgaaatgaaaaaaaaaatgtgagcag-TCTTTCATATAatattaaaagtgaaattttaaagcaaaacatcATCAAAACCATCCTTTTGGAATTTCAGAAAGCAGTCTTCCTTAGATGTGATCCAAGACAGACCTTTCTTCTAGTGAATCCTGTTCTGTAGCAAACATGTCATAGAGTTGAAAGCTAT--------------GCTATTGGTagaaaa--atcaatatgaaatatCTGGTATAGCGCAGAGTACAGTGCCTCAGC---------ATGTGACAGCTGCCAT-----TCCTGTTTTTACCCCTACCATTATTATTAGGGTAATGTCGCATTTTCTCAGCTGACTT-----------------------------------------------------------AGAGGAAAGCAGTTGGGTAGTCTGAAGTATATCTTCAACCTCATGCCATTTCTGTAATCT-TCTGGCCCTGAAC--------AAGCAACTGATTTCTTACCTGCTTTCTCTAATCATTACATGTGTGCTGTGAAGATGACTTTGAGTTCAGAAAAGTGATATAAAAATCAGG--TAAGTGTTGCT---CTCCTGAGCAGGTGCTTGAACTCTCCTTATTACCTGTGTCTGACAGTGGAACCTCTGCTGAGGATGATGGGGCTCTAAAAACGTCTGTGTTTATCTGCAGAGTG-GATGCTACTTTATTTGGAAGTTGGGGTGGAAAGTAAAACCTTTCAAGTACTTGATGCCGTTGAGCCTTTGTTAATTTGTGAAAG--------------------------------------------------------------------gcccctctctct---tctttcttccttgtcttt-----ctACCATTCTTAATTTTCCAACCCTGATTTTTGTTGGCTTCAAATATGCTCACCAGAGTCCTGCCAGCTTTAGTTGGAAGGAATATATTTCCGAGCTTAGTTGGACATCAGTTGTTTTTGGGCCCTGCCCAGACTTTGGACAGAGAAGGTAGTGTTAAGG-GGTTGATGGTGTCTAGACAGTAAAATCAGAAACTGTGTAATTTATGGTGTATTACAGACATCCACTTCCCGGATTGGAAAAGGGAAACAGGCTTTTATCTAAGGAAGTTACACTAAAAACCAAAACCCCTGGGTACTTCTGACCTATGAACATTTAAACcttgaatatttttacataatatttctctgttccttcaaaGACAGGAATTATTGCATGTAGCCCTGTGTAGGGATTAGAACTAGAGATGAGAAATAAATGCCCAGGGTTCAGGAGACAATTCACAAAGCTGTCTAGCAGTCCTTCCCAGCC-CCCGCCTGTCACTAGACCCCTGTGAGCTCACAAGGCAATTT-GAGCATGGTCCTTCAGTTTCAGAGGGACACTGGAAAGTTGGAGAGGAGAGAGCCTATCAGC--AGGAGGATGGAGTTATTTAGAACTCAAAAGAAGACTGAAGATATGactgaaaaacaggaaacaaaatgatcaccaccaccaaaaaaaaccccTTAAACCCAAATTTTATCCCAAATAAAAGGCATACTTTTgattaggaataaaaataataaaaataa----aatgaccccAGCTA----TACaacattttgtgtttct-ttttaggCTA-TTAATCCTCATAA---TCACATATGCAGTACTTAAAActgtataaaataatgaaagataaaacC--------CTAGGCAAAATTTATgtgaaactaaatattttttcaagcCTGTaacagtgtttattttatttttattt---------tccaggtgTTCAATCAGATCTCttgagtttcttttaaaaaaatacaactccTC-TGAGACATCATCTTGAAGGCTACTATCTG-----AACTG----------TTTtagaatatatgtatttaaaatgct---gTTGTCTTAGAGTTAggaattttatttgtgtttttctat--ctttaaaaat

a score=19508
s chr3           145781999 1280 + 160039680 TGTAGGATGTAAGCTG---ATCTGGAGCATAAAGGAAAAGTAGGTTGCACTTCCTGG----AAGAAGAGCGTGGCATCTAG----AACAAGGCAGGATGTCTCCTCTCTATATGGAC------GGCGACTTCAGTGCGCACACAGACGGTAGAGTATTGTCCAGCGAGTACTTCTGCGTCGGCATACATCCCTTACTGTTTATTTTT----GTGAAGACATGTT--------TAAAAGCCAAA---AGCTCCTTAACATTTTGAGAGGTAACAAGGCGAGCTGTTCTGTGGGCGCATAGAAGAAATTATTGTCCGTTTCGTCTGGAATGGCCTCTCTGTCTTGTCAGCCAAACATCATATTTTCACTGTGCTCCTCGAGTGGAAATAATCTGCAAGATTTATGCCTTGATAGCCAGTAATTCCATACCTT-----AATCGTGTTATGAATTGAACTGTAGCCTGTGCAGGAACCGACCAAGTGCATTTTCTGACTCTGGCCTGTAGT-CTTGATTTGAAGAGGACAGACATGGTCCCGAGCTCTTAGTTCAGAATCATGACATCATACATGAACAAGAGGTTG-TGCCATGCAACCATACA----GAAGCAACTCTCTGTAGAGCTTGGCCCCCAGGGGCTGCCACAACCTAGACCAGGG-ACTTAGTGCAAGGTCGGGTTATAAGATCCAGACACCTCTGACTG--ACCACTTACCGGGCAGTTTGTGGTGTGAGATCCTAACCGTGTTTTGTTCTAATCCCTGGAGGTATATATTAATATCTGCTTCTACT-GACCCTAAGCTGAAGCTTTAGAGGG---ACTCATCCATCCAAGACCGTCCTTTAGTGTACAGAGAAGGTCTCCTCTAACCTGGGTCGTCTGTTTGCCCACCCCTGGTT-----------GATACCCAGCAGCCATTTCTCTCCATCGTTTTATCTCCTCCGACTGTCTGGGCATAGTACATGAAGCTCCCAATTGGTGAAGAATGCTTTTCCTTTCGAATGGTATTGCTAGGAGACAACTGCTTGTCTCGTGTATCCAAAGGTAACACACACAGTAA-----------GAAGTCTGGGAGTGTATGGT--TTCCATCTGCGTGTAGCTCA-GACGAGCCTCC-GGGGCTCCGGATGCTTTGTTGAGACACAATGAATGTATTTTTATAATTGAATTGAACTCTCAGAGGAAGCATTGGGAGAGATAATCAGGCCTCGGTTATAGCTGCAGAAAAAGGAAAAAGGACCCAAGCTTCCT-CTACTTCCTTGTTGAGAGTTGAAAGTATTTTAGGAG--AGCCAGCAGAGGACTTGGGTAGTGTTCAGTG-GATGACCAACGAAAAGAA
s HiC_scaffold_1 132214642 1269 + 233722169 TGTAGTATGGAAACCACAAGGCAAGGGCAAAGAAAAGAAGCGGATTCATCTTCTTGGGAAGAATAATACAGTGGCAGCTAGTTGGCACaaatcaaaattttctttct-----tggaCTCACCTGATGACCCCAGCACAGTGAGAAA---TAAAGT---------CTAGAACCTCAGAATTCTCTAAGTCTTCTTGCTGCATATCTTTCTCTGTGAAAATACTTTGTAGGAGATAAAACTTAAATGAAGCTTCTTAGATCTTTGAGAAATGATAGGAAATACTATTTTATGGACTAATAAAGgcaattatt-ttagttttatttgaaaTGTCCA----GTCTTATTGCCCAAACAT---ATTTCCATTGCATTCTTGAAGTTGAAATGATCTGCAGGATTTACATTGTGAAGACCAGTGCTTCTACACttattttaaatcatgttttaaatCACAATGT--TCTGTGAAGAAGTCAACCAAAT-caatacatgattttaaaataaggcACTTGATTTGGGCAGTGTGGACGTAACGCCTGACTCCTAATTCTGAACCACTTCAGCA---------GGGAGCCTGATACTAGTTAGTCTTACTTTCTGAAGCAACT-------GTGCCTG--CTCCAGGAATCCTGATGAATTA--CCATGGTGCTGGTTATAAAGCTGAGTTCAGACACATCTGCATCTGTGACTGTGAACACTTACGGAG-GGTTTAGTGTGTCA-------------------------------AGCAATTTATGCATGTTATCATTTACAAGGAGCAAAACTGAGGCTTGAAGAGATTAAGTAATTTGCCTATGATTGAACACC-GTATGTGATGAAATTCTTTT-TAAGCTTGGTTTTCTTATTTCCAGCATCTTCTTTTAAGCCTCACACTGTCCTAGAACCATTGTCCTCCATTCTTTCACCCCCTGC-ACTATCT---TACAATACAAAAAACCCCCAGTTGTTAGacagtgttttttctttcaagtgATATTTCCAGGAGATAAATCCTTGTCTGGTATGGT--GAGGTAGCACGTACAATAAAAATCCCAGTAGAAGTCTGAGTGTTTGTAGTATTTCTGTTGGCATGCGACTCAAGAGAAACCTCCTAGGACTCAGGATATTCTGTTGATACGGAACAGATAGCTTTTTATAACTGCACTGAACTC--ATGGGAAACATTGGAATTAATGATCAGGCCCAGATCGTGAGTGCAGACCCAGTAGGAAGGACTCAGGCTGCCTCCCACTGCCTTG-TGTTAATTCAAACTATTTCATGAGCAAGCCAGCAGGGAAATTGTGCCGAGTTCAGTGAGATGATAaactgtgagaa

a score=42046
s chr3           145789917 1705 + 160039680 GAGAGTTCCATCTTAAGGAATAGCTTTGTTCCCCCTCAATCCCTGAGTCTTTGATCTGCTCATAGTCACACAAGGAAGTAAATGCTTGCCCAGTAGCCTGCTTTGTACTGTGATCCTTGCTGTCCCTAGCAAGTCTGAAAACCCTCCAGTTGTAACTAGCACTCCCCCACTTCCCAT--TCCCCACACCCCA----TTTCCTAGCTCTCTTGCCTACAG------TTGGGCGGCCAACT----------TTGCCT---TCAATTCCCTTTATTGCTGTCTCCATCCATATGCCACAG---TCCCCTCTTTTACCATCCATACTCAATAGGAGAAAAGGTTCACAGGAAGT-GCAGTCCAGTAAGACTCTGGTTCTCTGGAGCACTAATGGTTGATCATCCTGAGTGAAAGCTCCGATCTCTCGACTGTCCAGACAAGCAGGGGTAAGCAGACACCCTGTTGGCTGGCTGTGCTGTCTGGGGCTCTGTGTCTTGAATCTGGTGCAGGAAGCTGGTGGAGAACAGGTCATTCCCACCACCTTCTCAGATATCAGTTTGCTGACCTTGGCCACAACCTTGTGCTTAAGTGGCATGGGTGTCCAACCAGAACTCTGCA------ACAGTATCCATCTCCTGAGCTTTGGTTCCA--------------GCAGATGGATAGCCCAGAGGGTGCTGAGTGACAGTAACGACTTGGGTTCTAATAAAAATAGATAACTTGGTGTA-GTTAGCTGTGACTCAGCTAGTTAGCACTGTAACC---TCTTACTATGTCTAACGGGGACAACTGGGAAATGGGTGGGTGTTATAAATGTA-----------------CCACGATGTATACCTGTCTCCTCCATGTTCAGC--------------------------------------AGCCCCCTCCCCAGCCTGTGGTATTTCTGAGTATAATTCATTGGAAACATAAGAGTGTTTACACAATGGAATGGGTGTGAAAGTCTGCTCAGCTAGCCCAGGCCCTGTTGTGATAGCTTACACTTCT----GCTCTTTCTCACAGCATGAC-------------ACAATATTTACACTGTGTTTGTGTGTTTTCCCAAAGCAGTTAACAGTCATGTAAACACATCCAGTTTACTGATCAAGCCAGAAGAGAGATGTCTGTCCCAGTCTGTCCCTTTGAGCTGGCTCCGCACGGACTGGCAACACACA-GCATTTTGCACATGCCGTGTCTATATACAGAGCGCAGAGTTGTAAAGTCTTGCTTGAATCCAAGTTACCATATGAACCAGTTGGCACAAAAACCCTAAACAGAGTTCAGGGACTAGTTTGATCCTTCCAAGCAGGCTCCTGGGCAGCAACATAAAGCGGCACACAGGCAAACATTGTTTTTTCCAGAAAATGAACAGATTTTTAAACGT-GCCTTGACTAGGACACCCACTTCTCTAGTTTCTTCTCCCCTTCCCCCTGCATCCCTTTCCTTAAGCTTATTTGCACGTGGTAAAATAAAAGCCCCACTGGAAACAGAGGAAATATGAAATATTTATAAACTGTGGGGCTAAG--CTGGGTTTCTATTGGAATCTAGGACC---------TCTTCTATGTGAGG--------CATGCTTACTTGTCTTGGACTAAGGGTGAAACAGTACCAGGTACTGA----TTCTTCGATGCCAAGGAGCCTGCTGCACCCCTCCAAGCCTTGTTTGACTCCACTATAAAACAAGGAGTTTAAATGAAGCTCATGCTGGACTTAATAAGGAACTTTAGAAGCTTTAGTCTAAGTTAGTGTACCAGGAAAATGTCGT-CTTCTTAAGACTTTTAAGATCTC
s HiC_scaffold_1 132221421 1740 + 233722169 GAGGTTTTTAACTTAAGATTTCAGCTTAGTCCCCTTTGATCCCTGGAACTTTTATCTTCT----GTCAAATAAGGAGA------------------CCTGTTTGATGTAGCACTCTT----GTCTTTAGAAGGACTGAAAAGCCTCC-----------------------TTCCTATCTTCACCAGGCCTCGCCATTTTCCTAGCCTTCTTATCTAGAGGTCTATCTAGACTACCAACTGTTGACTTCATTGCCTGTTTCATTTCCCCATGTTGCTATCTCTAGCCATATGG-ACAGAGACTCTCATCTTTATCGTACGTATGCAAGAGGAAAAGCCTTTACCAGTAAATTGTCGTCCAGCAGGGTT---ATCATCTGGAACTAAAACGCATGATCATCCAGAAT-AAACCATTGCTTTCTTTGCTGTTCAGGCAAGCAGGAGTAAACAGGCACCCTG----CTGACTGTGTTGTCTGGAGTTAC-TGTCTTGAGTCCGCTGCAGGAAGTTGG---ACAACGGGTCATTTCCACTACCTTCTCAGATGTCAGTTCCCTGACTTTGGCCAGTCTTCACTTGTTAACCAGCGTCCTTCTCCGAACAAACCTCTGCACATGCAATAATAGCCCTCTCTTGAGCCTTAATTCTAAGAGGTCTGGAAAGGCAGATGTAAAACCCAGAGGATCCTGAGTAACACAAACTACTTGAGTTTC--------TAAACAATTTAGCGGACATTAGCTGTGATGCTGTGAGATAACATGATAGCCATCTGTTACCTTCTCTAACCAGTGAGACTGGAATATGGGCTGGCGCAATGAATGTAAGGGTTGGGTTTCAGCACCTCTGATTATACTT-TTTCAGCTATGTTCAGCTCTTAATGTTAGAGGAGATGCTTGACACCTGAAGAAATAGCCCCTTTTCTACCCCCTCTCACctacaaaactga-------aaaatatacaaCTGTTGATGAGATGGGAGGGGTACAAAAATAtgctcaaatat-----atattttttaaatttcttctactttttcttgCTCTTCCTTCTGTCACAACcttagagacaaagaaaatatttaca------ttgtttGTTTTCCCAGAGAGGTAGATA-TCATGTCCACATACCCAGTTTAATGATTAAG----AAAGAAGATAACTATTCCTGTCTGCCTCTTTGATCTGGCTCTGCATAGACTGGCAAGACACAAGCATTTCAAACGTGCCATTTTTATATAGAGAGCTCAGAACTGTAAAAATCTTCCTTACTTCAAATTGCCGTATAAACCAGCTGGAATAAAAACCTTCCACAAAGCTCTGTAACTAGCTTGTTCCTTCCACATAGGTACCTTGACAGAAATCTGAAGCTCcacataaaaaaaa-------ttttaggaaaatgaacaGATTTTCAGACACAGCACCAAACAAAATACTTTCTTCTTCAGTCTGCTTTCCATGATCTCCTACA----TTTCTTTAAGAT------CACATAGGGGAAAAGAAACCC-----AGAACACGAAAATGACAGGCTCTGTATACACTGCATGACTGAGTACAGGGTTTAAACTAGTCTTTGAGACCTGTAATCTGTTTTCTGTGTGAAGGTATGGTAAGTGCATGCTTGTCTTGGGTTATGGGTGAAGTGGAAACTGGTGTTGACATTTACTGTGATCCTCAGGAAGTTGCATCACTTCTCTGAACCTTATTTGCCTCAGCTGTAAAATATGAAACTTGAAATAAGATCATCTTTAAGCTAATAAGGAGGCTTGAAAGATTTAGCCCAAGTTGATGTGCCAGGGAAATGTCATGGTTTCCAATACTTCAGATATCTC

a score=23979
s chr3           145792805 2102 + 160039680 TAAAAAGCGGGGGATTGTCTTTGAAGGGCGAAAATCTGAAACTACAATCCCAAAGTGAGATTT--AGTTCCAACACGAAAGAATTATGGTGTGAAACGCAGCACGTGATTAC-CCCAGCAGCTGATACGGCCTGACAGCTCCCCCGAAAATGAACTGCAAACGAGGCTGTAATTTAAAGACAGTGGCGCATGACCTCAATGATCGAAACACCAAAAGCCTCTTACAGAGGCACAAATAAATATTTCAGCATGGGCGCTATCTCGTCTCTCCTGCAGCCCTCGACAGTAGGCTAATGGCTGATCGTGTTCACTAATTGTTTACATAACTAATATTCTCTGTGTTTATATTCTCTCCTTGTTATATGTTGATGCTATAGAAAGGAAAGCCAACAATG----ATTCCT--CTCTATAAATTCTGCATGGTAATAAAAGTAATAAGTATACAATCACTAGAGAACATTTGAAGataaatattttaatttaaaatCTCAAAGCTTCGATATTTCTGTGACAGAGGGTTCACATATCCCTTTGTAAAGTCTTTTAGGAACTCAAAAAGCTTAAACACTACTTGGTCATTACACATTTCCATGAACTAAAAGGTAATG---ATAATGGTATCT-GTTTTATGCTTAGGGAAGAAGATAGAGATGCTGGCTTAGGGAAGAAAGTAAGCAAATGTTTTCTTAAAGAACCTCCCAAGAGCCCTTTTTCCTACATCACTTGTTAACCAGTAACATCTTTGT-------------TTATACGGAAAA----CAAAGCTATACAAGGTTGCA-AATCCATACTTCACCTCAGTTTTGTGGACCCTGTGCCATCTCTGTTACtctataactaataatcttaaagtagaaagcttcaagccaaattgtttttactggtagattctaccaaacatttaaagagaggagagata-cagttccctgggatcttgtcaataaaccagaagcagagagaacacctgttaatttgttctacaaagccaatattatcctaatacc-aagc-agataaagacaatgtaaagaaagacctaaaggccagtacatcttatgaagattgactttaaacataacctcatggctaaaatggtagctctgtgttgaagagaacttgctgttcagaggacctgggttcagttcccatctcctcacatagcaggtcacaactgcctataactccagttccagggggatccgatgccctcttctgaccacctcaggttcctgcacacatgtggtacacatatgcacatgtgtaataaaataagtaatgttttaaagccctcaaaatactaacaaatactattctataacaatagtatacaaaccaattatacaccatgacta-gtagcatttgttccagggacacagggctaattcagcacgtgaatatcaatgcaatcttccaaatcagtagtcaaaaagaagaaaagtcttacat--ttatattagtagtatgctcagaaaaaaactgtatgaggaaacacccattcacaatTACAGAAACAAACAAGAACAACAACAGAATCCATGTAAGCTCTCAGCGAGCCACAGATGTAGGGGACCATGCTTAACTAGATGAAGAACTTCCACCAAggggccagcaggacggcttagagagagggtaaaggttgctgcaaacctggactcgatcgcctgggacccacatggtaggaggagagaaccaacaccaggaacttctcctctaacctcacgtgcgcatgtcaggcacCCCACCCCACCTCCGAGCACAAGTAATAGCATACGATaaattcctccttaaggaagaacacacaccaaatccccacagctaacatgtgcgtacgggtaacaggctcagtgtttgttctttacgattaggaac-aggccctgcaagtcttagcc---------agtgtaataaga----caaaataaataaaaggtgtctatatgttaaggaagaaaactaaacttccctttgctttcaaatgacattattttctacatgagaaaatttcaaaagattgacattcttacacacacacacatatttttaagaacaaa-----aaatatagcaaagttttggggcaaaatcctcatatacaaagccag-----ccacttctgtaccagcaatgaa-ggctgggatttataa
s HiC_scaffold_1 132225457 1583 + 233722169 taagaagtGATAGATTGTCGTTGAAAAGT-CAAATCTAAAGCCACAGTCTTGAAGTGGGATTTTTGGTTTCGACATGAAAAAACTAGAATGTGAAATGTAATGCCTAATTTCACCCAGGAGTTAACATGAAATGACAGCTCACCTGAAAATGAACTGCAAATAAATACTTAATATAAAAATGGCATTGCATGATCTCAATAActgaaatactgcatgatttttagcatagcataagtAAATATTTCAGTAAGA----------------------------------------------AGTTATATTCTCTAAT-------ATAAAGAG-----CCTGTGTTTATATTTACTTCTTGCTTTACATTTATAGTCTAGAAAGGAAGGCCAAAAGTgcataattctttattttataaccTTTGTATAGTTATACAACTAATAAGTACACATTCCTTAGAGggtatataga---aaatat---------aaatttttaaaaattaatatttttctgct---GTGTGAATAAGCACCTATGTGAAGTC-ATTAGGAAGTAAAAAAGT-----CAGTGTCTTCTAATT--GTATccccatgaaataaaaaaataagaaaataattatatatagttCTGTATTTAAGGAA----ATAGATATGCTGGCTAaggcatgaaaataaataaatggatgttaAAAGCAT---------GCTCATTAGGCTGTATC-TGTGTCTACCTTGAGCTCCTCTTCTATACTTAGTATGTTATGcaaaaaatgggtaaagatatGTCAAGTTGCATGTTTCATACTACAGGTTAGTTTCATAGTCTCTATGTCATCTCAATT--Ctgataa--aataa--ctaaaaaaaatagtACTAGGCCCAGTTGATTTCTTTGGTAAATTTTaccacacaatttaaaaaaaaaatgacaccaaTTCTATCtcatcttttccagaaaataGAAGTAGAAAG---ACTTCTTAACTCATTCGATGAGGTCAGTATTATTCTCATGCTGAAGCAAGATAAAGGCATTA-AAAGAAAGAGATATCTGCCAATAATTCTTATGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATATAT-------------------------TAAAAT--------TTCTCAA-----CAAGAAATTCACA-------------AACAATGATATGTAAAAGAATTCT--ACTATGACCAGGTGgcattcattccaggtatgcaaaGCTTACTCAGCATTTGAAAATCAGAATAATCCCCCACATCAGTTGGTTAAAAAAA--------TTACGTGATTGTGTCAATA-CGTGC----AAATAAAATGTTTGACcaagcacccattcatgattaaaatttcaaaaaaca--aatatcaG--------------------------------------------------TAAATGAAG------------------------------------------------------------------------------------------------------AATACAAGGAACTTCCT-----------------------------------------------------------------TGAATTCA----TAAAAAAAACCATCTACCAAAAACTTATAGCTAACACATACTAATAAGTAGCAAGCTAAATGTCTGCCCTTTAAGTTAAGGAACAAGACACTGCAACTCAAACCTTATACTGAAAGTGCAGTTAGagcacaaaaggaaataaaaggggtTTAggttggaaaagaagaaatttaactgCTTTTTGTTTGCAAATGAGATGATTTTCTCCATACATAAATCTC-AAAGATTGACA-------------AAAAGTAATTTGTAGAACTAATGAGGAGATATAGCAAAGTTTCACTGCACAATATTAATCTACAAAAGTAGGTTGCTTTCTTATATACCAGTAATAAATATctggaatttgaaa

a score=32486
s chr3           145798110 1048 + 160039680 AGGCACAGAGGAAGACAAGGACGGAGTCCAGCAAGGGACAGAGGTCGCACTACTCCTGGCT------GTGGTCTCTATGCCTTGCCCTTACACTACAGTGACCTCAGACAGGGAGAGGCACCGCAGCATAACATGAAGGACGTTCCTTGAG--TTTAGTGTCCAGCACCAGGAG-----------------AGATGACCCTGTGCCCCGGACAC-GCCTTGAGAGGAG--GCCTCAGTGTCTCTCCAGTGCACCGAGAGGGAAGGTCCCGATGACCAACGGGATGCTCCAAGC-CCTGACTGCTTGAGCAAGAGCCCAAAGGACAAAACATTTTTGGGTTCTTCTGAAACCTTGGGCACTTAAACTTAGATATGTAAATGAGATATTAAGCCCCCACAGACTGTGAGGCCTCCTCTT-AGCATTTGGTTCGTAAATTATGGCCCACCAGAGCTTTAAGCTGTAAAATTGCCCCATCCCGGGCCAAATTAATGGTCTTTTACTTTCTGTTTTTATAAATTATAAACCCCAGATGTGTCAAATTATGTAATGAGAACCATATAAAAAGAAAATTGTATTTTAAAGAA-TTTAGTAATTTTCCTACTTTACAGGGGTTTCTCTGGGTCTTATCTTAATGGGAGAGAAGAAACATGAACCTTGTATGCTTTCC--CCTTTGGTTGCA-GTGCCAGGAGAGCATGAATTGTCAG---------GGAAAATGCTTTTCTTGGGCCGATTTTTTAAATAGAGGAGAGCCAGCTGCTGAGATAAGCCTTGTGCTGTAGCAAGCCTACGCATCCTTGTTTGGTCTTGGATCTTATCTGTCCACAGCAGCAACAGC-AGCTTCCTAACAAATGAGGTTCAAAGAGACGAAGCCCGTGTTTGTGCCTCTCATTGGAATGTTTGCCAGGAGCACCACAGATTTCGTCACCATGTCCA-TCCCTGCTCAAACTCTTTGAACGCTTATCATCTGCCTCCATTTCCTCCTGCCTGGCCCCAGAGCAAGAATCATTTGTAATCATTAGCAGAATGGAATGTGCTGTGTTAAAGTGTCTAATACTTAACATCTCTAAGACAGACTGGAAG
s HiC_scaffold_1 132230814 1029 + 233722169 AGGAACAGAGGG---CACAGCCAGAGCCAGGTTAGGAAGACCTGACTGGCTTCTCCTGTCCTGGCCCATGATCTGTACTTCAAGCCCTTGTGCCCCAGTGACC-----------------------------ATGATGG-----CCTTGgtgcttcagcctcctgcatcAGGAGCCAATTCCAGTGGGCCAGGGAAGTCCAGGGATATGGGCATTGCCTTGATAGGAGCAGCATCAGCAT---TCCTGAGTGCTGAGGAGAACATTTCCCAGATCTGAAGAGATGCTACGTTTGCCTCTTTGCTTGCACAAGAGactaaaagataaaacatttgttggctttttaaaaaatttggaca-ttcaaccaaaatatgtaaatgaaatattaaatccTCATAAATTATGAGACCTTCTCTTTGGTATTCGGTTCATAAATTATGTTCCACCAGAGTTTTAGATCATAAAACTCCCCTGTTCTGAGCCAAACTAATggtctttcactttctgttcT-ATAAATTATAAACCCCAGATGTGTCAAATTATGTAATGAAAActgtataaaat-----ttgtttttttaagaaacttcataaatttcttgttttattgaaGT--CTATTGGTCTTATTTTAatggaacagaagaaaaattaaccttTCATGTTTTCAGGCTTTTTTTCCCACATTACAGAGAACCCTAAATTGTTAGAACGGAAAAGGAAAGTGCTTTTTGAGATCCAGTTATTTGACTAGAGTAGATGCAGATGCTGAGATAAACCACTTGCTGAAACAAATGTATGTTTTTGTGTTCGGTCTTGAATCTTATTtgcctgcagcagcagcagcaaacttAATAACAAACGAGGTTCAAAGAGATGCAGCGGCTATTTCAGCCTCTTACC-TAATGTTTTCACAGGGCTCTGTAGATTTGGTCATTATGCCCATTCCCTAATCAAACTC--GAAAGGCTTATCCTCTGC------TTCCTACAGCCTTTCCACAAAGCATG----GCTTATAATCATTAGTAAAACAGTAAATG-TGTGTAAATATGTGTAATAGTC-ATATTTCTGAGACATTCTTGAAG

a score=32128
s chr3           145801861 1714 + 160039680 GCCAAGAA--ATGAGGA---ACCTTCCCAACCCGTGCCTTCCCCAGAAACT-TGTGGGAGGA-----------ATGATACTACAGATT---TGATCTTGCTCCGTTATC-----TCTAGGAAGGTTTAGGAAGGACGGCTTTGCTTGAAT-GTTTGTTT-----TTCAGAGCCAGGTTTTGCAAAAGA--GTAATGCTGAAA-ACAGAAGAAGCGTATT---AGAAAATATTCAGTGATGCCTGTCCAGAAGGCCC-GCTTTCTACACCGTAATGCACTTG--------------TAATTCTCCCCTGTGGCTTTATCAGAGAAGTCCGTTTATTTGATGGGAGAGAGGGAAGTGCTAAATTCTAACTATTACTGAAAGAAACGTTCCTTGCTCTGTTGGTCTTGGACTTCCACAGAACACTTGGGTCCAGATGTTAAATTGTTTTTTCAGAAGCCTTGTTAGACTGCCAGAGTGCTAGATTTTCCACGGCACTTCCAAATTCTGGTCTATTATCACAACACACAGGAATCTAAAGTTTCAAAGCACAACTTTGGCTCAGAACTGGATCAGCAGCTGCAGAAAATATGTGCAAAGGCCCAGGTTCACGGGTCTGGGATGCAGCGTCCTTGTATGGTAAAACTGTAAGCAAGTTGCCTTTCTACCCACCTAGTCCAAGACGTGGGTCAAATGTTGAGAGTATATGAGA--TCCTTGATTCTATCAGGACTCATGGGAACTTGATAAGGAACTTTAT-----AAGCTGGCACACGGGTTCTACTATATGAAATTATAGATGAGACCCTCCAGttttattttttaatgttaatattcatttttggttttggcagactctcactatgcagccccagactggccttgacctgtcatcagtcttcctacctcggcctctcaaggtctgagattgcaagggttaccgtgccTTGTTTTTGCTTAATCCTCCTTGCAGAGTTTCCACAATGCTGGTTTTATTTTACATTTTACCCTAGTTATATCATGACTCCTCAGACAGGCTAATAAAATAACCTTTCATCGAAACATTGTGTACATAATGTTTGCACTTTCTT-GAGATGTTTCATTGTTGCCTAGGAAACTGATAGTGTGCTCTTCCAAGGATGGAGAGAAGGGGGGTTCTCTCAA-------------CATGTTGAGGGCAGGAAG-----AGAGGGTGTAAGGGGAAAAGGACTGAGTTGTAATACCTACAGGACATACACAGAGTTTTTTGCTGAGGAAGTAACCAGACAGAGACAGAGATGATAATAAGAGACCAGCCA------TCCCGGGAAGATTGTATTGCTCAGAGT-GAAGGAATATTATACTCATTGCTTTAGttttgcctttttgaaatggggtctcctgtagctaaggctggctccagagttgctttgtaatcaaggatgatcttgaatccctgattctccagtctctactttccgcatgctgagctgcaaacctggggtgccacacctggttGGGGAAAGCATTGTGATTTTTTGGAGGGTCTAATCAGACAAGTAAT---CAACTCCCCACTGGGTAGAATCCAGTGGCTCCAACAGCAGGCTC----TTTCTCTGTTTGTTTGTATCCCATAACAAATAACATTGGAACAGGTAGTGTGGC-TTGTGTACTTCGCCCTCAAGGAACCTGTGCTGCCAGACCACGTTGAGTTATGAAGATAGTTCACAGTAAAT----TATCTACCCAATACCTTAAAACGAAAGCTTACAAATGTTTTAAATTGG--CTTTCAAAGATGTATTTAATTCTC
s HiC_scaffold_1 132235095 1479 + 233722169 GTCAAGAACAATGTGGACAAACCTTGCT--TCCCTGTCCACTTCATAAACTCTTTGGGAGAATTTAGGAGAAGATGAAACTTCAGGTTCTTTTCTCGTCCTCAGTTAACAGACTTTTAGGAAGGTTAAGTGAAGAAGGTGTGGCTTTGatagtttgtttcctttttcagatTTGAGTTTTCAAAGAGAAAGTGATGCTGAAAgagtaaagaaatatatttggaaaagatACTCGGTCATAAATATCTAGAGCATCtagatttttata---tattacttttGGGCATATCTTAGTATAAACCATCTCAGCTTCCTTATAAAAGACCCCAATTTTTTTTATGAAGGATAAGGAAGTACTGTATTTTAactattaatgaaagaaatgttcttTGCTCTGTTGGTCTTGGACTTTCACAAAATACTTGATTCCAGATGTCAAATTGTTTTTTCAGAAGCCTTGTTAGAGTGCCAGAGCATTAGATTTTTGAAGGCATTTCCAAACCCCAGCTGATTATCACAACACGCAGGAATCCTAACTTTCAAAGCTTAGCTTTGGCCCTAAAGTGTATCAGCAGCTGCAAAAAATATGTGCGAAGGCACAGGTTCACCAGACTGGGACCTAGTGTCCTTACATGGTAAATCTGTGagtaaatttccttttcttctttgttatcagAGATACGGTTCTGTTGTTTAAAGAATGCTAAATTTCCTTGATTCTATCAAAAATAGCTGGAGCTTGATAAG---CTCCATAACGCAAGCTAGTTTATACATTCCATTACGTAACATTGCATA--------------------TTTTaaca--attgtttattttta-----------------------------------------------------------------------------------------------------------------ttaattcttgtgTTA----------AGTAATGAATTCATCTTACATTTTGTATTAGCTCTAT----ATTCCTAGACTGCATTAACAAAGTAACCTttcctaaaaatatttcatacataAAATTGGTACTCTTTTGGAGAGATTACATTATTTCCTAGGGAACTGAC--TGTGCTTTTCCAAGGATGGAGACAA----AGTCCCCTCAATACATACCTTTACCATGATGAGGACAGGAGGGAATTAGggggaagcaaagaaaaatttctgaGCCATATCACCT-CAGGTAAGAGGGGAAATCTTCAGT--GAGAAATAATCAAGCTCAGGCAAAGACAGCAA----AGACCAGAGACTATAGTCACAGGAAGATGTGCTTGTCCACAGTGGAAGGGACATTGTA-----------------------------------------------------------------ATTTGTCATGAGGGACTAGCTATAA-----------------------------------------GAACCAGG--------------------------------------------------TAAACAAGTGGTAGAAGACCCCCCGAAAGATAAAACTCAGTATTTCCACCAGCAGACTCAATATTTCTATCTTCATTTGTGTCATTTAGCCAATTGTGCT-GAACATCTCATATAGCATAGCAGACTCTACACTCAACAAATGCTTGCTGTCAGATGGAGTGGAATTATAATGACAGTCTATAGTAAATGGGATACCATCCCAGG--CTTAGAAc-----ctttcaaatgttttaaattaatttttttaaagacacattttATTTCC

a score=44323
s chr3           145805712 1673 + 160039680 AGAGCAGCCGAAAACAACGCCCTTTT-GAGGCAAAATAAGTTTCTTCAGGGCATGCACTTGGCAAGAGCA--GGAAA--AGTCAGGGTGCCTTTGTCTTACACTGGGGGAGGAGGATTAGGTTTCACACATGATTTCTTTTTAAACTTACAGCTGTTAAAGTTGTGAACAGTATTGAAA-GTCCTGCATCTAATACCTTATTTTAAACTAGAACAAAAAAAATCATATTGCAA-CCTGGTCCTATCTTAGGAGAGCTATGATTTAAGCTAAGCCCGTGTG------CCTGGTATTTCAGTTTCTGAAGCTGAATGTGTAAGACTTGCCAGTCAAAAGGAAGCCAGGGGAGGCAGGAGTCGTACGTAAGGAAAGTGG-CCGATCTCTTCTAAGTCACATGCAAATAGGATATGGTATATCCTGGTATA-------CTGTCTGTGTATAGACACATATTAAAAACACTCTGTGATGCTGACACAATGTTTATCAATTTTAAATGTGTACATTATGATTTAGGTAACTCATACAAAAATCCCTGAATCAATATTTAAaaacaaaacaaaacaaacaaacaaacaaacaaacCAAAAACCCCTCACAGTCGATTCTTTGAGATTTTTATTTCAAAAAGCCTCCTTTCAGATTTAAATGAAATAGACAAC-GTTGTTTTTATTGCTTGAAAGCACAGCGGTGCCCTTGAGAAGCGTTCAATTA-CAGCGACTGTTGTCTAATTAGGTGAAAACAACCATCTAAGAAAGTCTATCATTTGCTGTAAAAGCAAGATGTTTATAATCCAAGCATCTTTCCAGATGCTGGAGAATTGCTGGAAAGCTGGGAGATTAGCTTTCCACCCTGATAGGGGTTTGAAAGAGGTCAGGATGTGTTTTACCGTAGCGTCTAGCAATGTGAGTTTATTCAGACTGCTTGGCAGACATTCCTGCACAGTCAGGCCGAATCAATGAATCAACTATTGTGGGCCAGTCCAGCTCTCAGTCGCTAAGACATTGTTCAAGCGCACTAAGGTTTTAGTCTATGTGGCCTAGAGAAAGGGCAAAATGTATTAAACCTTAAAGGGTCTCATCTTTCTTAAATTAGTAATTAAAACTTTGCCCAGAGATTTCA-TTGGGAGCAGT-GGAAAGTCTACCCACAGCAGGAGGATTTTGCTTGGGAAAAAAAGTACAAGAAAATGGCTTGCCTGTAACACCTCAGGGCAGGGGAAAAACGCACGTGTGTAGAGGAAAATGGGAGTATCTAAGACGTAGAC-------TCAGCCACAGAAACGCTGAGCAGGGCTCTAAACCCTTAAAGGAATACAGTGTATTTACACTTAAGTTTCAAATGAAGATTTGCCTTCATTTTTATTAAACGCGGTTTAATGAGTCTCTGTTCATCT---------ATAGGCTTTCTTGGAAATTTAGCCTATTATTT----------------TCAGTTTGGCAGGGGTGAAG---AAAAAATATTATTATAAGAAAGT-----TTTCCAACTGGTTCTTTATGAATATTT---GTACCTTCTTTTC-------CAGTGGCAATGCAGTGGTTGGATGCTTAATAGAAATGGCTAAGAGTAGAGAAACCCTGTCTCGGGAAAAATTAAAAAAAAAAAaaaagagtacatttttaagcccacttgctacaaataaatggcaagtatgtaaggt--------aacacaggtcaattagcttggtgtagccactccataatgtgtGTGTGT
s HiC_scaffold_1 132239083 1568 + 233722169 aaagcagcCAAAAGCAGAGATTTTTTCAAGGTAAAAAATTCCTCTTTCATTCATACG-TTGTCAAGGGCAAAGGAAATTAGTAAGTATGTCTTTGTA--ATACTGCAAAAGAAGGATTTAGTTTCa----tggattattttta---ttacaacTTCTGAAATTATTTGTGACAAAGAAATGCAATGGATCTAATACcacattttaaac------aagaaaatccGTATTATAAGCCTGTATCTGTCTTGGAATGGCTGCAAGCTCAAATTTGTCAGTTTAAAATCCCATGGTTATCCAGTTT-TAAAACAGAAGTAGTAATACC--CCAA--AAATGGGTGTTGCAGGAAACAAAtgacagatttaaataaaaagaactgaactcttttgaatttta---------aatatagaatttcCTGATATAATCTCTACTATGTACATACAGACAGATACAAA----------------TTATGTAATGTTTGTTAATTTTAAGTGTGCAAATTATTAT----------------AAAATCCCTGGATCAATATT-----------------------ACAAA-AAGCCAACCA--------------TCAGTTCTTTCACTTTCAGATTTCAAAAAGCctcttttcatctttaaattgaATAGACAACCTTTATATTTAGTGCTGAAACATACAGTGGTGTCCCTTTGAAATCTCTGATTAGTAGCAACCATTGTCTAATTAGATGAAAACGATAATCTAAGAAAGCCTATCAGTTGTTATAGAAGCA-GATATT-ATAATTCAAGCATATTTGCAGATGCCCGCGAATTGCTGGAAAGCTGCAAGTTTAACTTTCCGCTCTGATAGAGTTTTAAAAGAGGTCAGGGTACGTTGTACCATAGTGTCTAGCAGTGTGAGTTTATTCAGACCTTTTGGCAGACATTGCTGCACACTCAAGCTAAATCAATGAATCATCCATTGTTGGCCAGCTCCGCTCTCAGTTGCTAAGAGATTTTTCAAGCATACTAAGGTTTTATTCTTGATGGCCTGTAGAAAGGGCTAAATATATT--GTCttaaaatgtctcatttttcCTAAATTAGTAATTAAAACTTTGCCTGGAACTTTAATTTGGGGGCAATAGGAAAGTCTGTGTGTAGCTGGAGTTCTTTCTGCTGGGAAAA---TAC-AGAACATACCTTGCCTATAATTCC---------------AAAATATGTGGGT-GAAGGAAGTGGAAATGTTTGAAAAGCAAACATAGATATCAAACACAAAAACTCAGAG-AGAAGTCTaaactctgaaa-aaataaagtgtgtgtgt------gtttataaagaagattttccttaatttttattaaatatgctctaatt-ttccttgtttctctttgaCTCACAAAGACCTTTT--GTAATGTTGCATATTATTTCAAGGCTCTgatgtaatcatttttaaaaatgtaaaaattaaaaactactaCAATATAAAAGTATGTAATTTTAGCTTGTTTTTTATGAATGTTTAAAGTATAGTCTATTCTTTATATTAATGACAATATA----TTAAATAGT---TATAAATAACTAAAAGTAGA----------------------------------------------TTTTAGACATTCTCATCACAGATATGTGAAAAATATatgtggttatatatatatatatattaattagcttgatttggtaattccattatatatatttat

a score=74110
s chr3           145808468 3548 + 160039680 CTTAATTTCTCAAAATGAAATCACATC-CATGACTGTCTCATGTAAACTGTACCAAATATCCTAAAAGGAGTTTTTGAGGTGGTCTTTGGGCTT-GGAGTGAGAC-----TGGTGTTACAGAGGCAACCGTTGCTGCAAGGTGCGGCTGT--TTAAG-------GCCCCTTTGGACCCTTGGTGTC--GGCTACAGTGGGGTAAAACCCAGTAGATTGCA-----GGTAGTTAC----AGGAATCAAATAAG---AGGTCCCAGTCACCTCAGCAGAGGACTCCCAGATAAGTGCCGGTCTCCCCTGCCTGTCTCAGATGTCAGAGGCGCAAGCCAACAGACCCCTAAGCCTTCACAGCCAAGCCCTGTTTGTTTTGGTTGCCGATGTGAGTGCTTTGTTTTATGGCTCATCCCAGCAGACATGTTT-------------------------GAGGCATCGTAATGAGGACATTTG--------CTGCATGTGAGGGTCCTGGA---------------------------------ACTACAGCAGCATCACCCTCTCTTTGGCAGAGACGCAATACTTTTGGCCCTTGGCTTCTTTTCCCATAT----TCTCCTAGCTGTCCTCTATGGATGACCTCACC-CAATACTGGCT-------ATGCCACAGCAGTTGTGCTGCAGGGAAGGGGCAGAGCCTTGGTTCCACTCTAGCCGGGGTTATCACAG--CATTGTTCCT--AAGACCATAAGCCAAGCTCCCCCCAAGTGTGA------CCCCCACTTACACACTCCAGCTTCTGGA----------TGAAGCTTAC-CCCCTATACA---GCCAAGAGCCCG---------TGCTTTTACAGTACCTG----------TTCTTAATAG---------------AGGAAGACAGGATCTGTCTCTCTG----TCCACTGTTTCCCTCT--AATCTCAGAGATGGCTTAAACCCTGTTCCTTTTAGGTAGTTTTTCTTAAGCAAGGCAG-----CAGATGGAAT-GGAACCATATCTACCTGGACTACCGAATTAAACTGAAGGGAACTGCTAGCATATTTGCTCTCAGAATAACACCAAGTAGGCATTAGATTAGCCTGG--------CACAGAACCTCCACATAGAAAAGGAAAGACTGTGTCCACACAGTCACGCGGGGAAGAGTACCACAGCAAGGGTATATAGAGTTGGTGAGTGGTAATGTTGGTCTGAATTATCCTCATTAACTACAAGAGAATCGTAACATCTACTTTTAACTGGTTACAGAAAGGTGCTTTGTTTTGTtttttttctagcgccaggagtagaacccaaagtcttgcttatgctacgcgagcactctatcactgagctacaacctcagcACTCACTTAGCGTTCTTTAACAGGGTCCTGCAGTCTCATTCTCTTACCCACACTCACTATCAACTCACTCTAGCATAGAAAGGCCTTGAACTTGCCTTCCTCTGGTGCTGCCAGGCCTGGCTCATTGGAAAGTGTTGGTAACTTCCTAAAGGTATG-TAGTTACAGTCAGTTATGTAGTTACAGCCAGGTATATAGTTACAGTCAG-GTATGTAGTTACAGTCAGGTATGTAGTTACAGTCAGGTATGTAGTTACAGTCAGGTAGTATGTAGCTACAGTCAGGT-----------ATGTAGCTAC---AGTCAGGTATGTAGTTACAGTCTAACAGGTA--GAAGTTCTTGTGTGTTGGCTAGCGTGTCTTACCTGGAGCAGTTACACTGCCAGGCTGTCCTCAGGGAGTTATAGAGTCAGTTTGTCTCTGGGGAAAATGAAATGAAAGTGAATCCAAAGGATGTTTCCCTAAGTAAAG-----AAAACCAGAAAATAGT--------AAAGAAAAATCAGCAAAAAGTGACTT-GATTGTGGCGCTAGGATTCAAGGGTACTC-----------------TGTGG----------------------------ATGACT-----------------GAGGAACAGACAGGAGGA--GGGTGAGGGAATTCCCCCCTC---CTAAATCATGGTTCAGAAATGTGTTATAAAAAAAAAAACAAGAACGGAAAAGCCATTACATGGAGTATAAAGAAATACTTGAGTCTACAAAGCCACCGGACTCTTGGATTCTGTTTCCGCAGACATACTCTCCTATTCCCACAAGTGTCTGGAAAGTTGACTCCTATTTTTCTCTGTCTGGAGGTACAGTTGGTGTTAGTATTTGCTGCATGGCTCACTCTGGGTCAGAGTGTTCTACAG--ACACAG-CGGACGCTCCAACAGGGAGTCTGCTGAAAAGATTGCAGTGGGACTGCTTCCCTGAGGCGTGCTTGGATGGCAGTTTGA-TGGCAGTCAGCTCTGGTAAGGACAGTGGAAGCC----------------------GGCATACCTCTTGTCACCTGTG--CTTATAGGCAAAGTTC-ACCTGCAGAGGCTCACTAAGAGCCATTGTGGCCTCCTCTAAGTGAATTCTAAAAGAGATGTCATTGAGTGCTTAATGCTTGTGGGTTCTG---ATGTTGGTCTGAAATTTCA-------------TTTGCAAATTGTAATATGTTAAGAGGGAATTCTGTCAAACCTGTGCGTGTG-----TGTGCTTCAAATATTCGTCAAATATTCGCA-CTAGTTGTAGAATGACTTCTTAACTTGTTAAA----------------------------------------------------------------------------------------------------------AGCAGCAGAAGGAAGAGACTAGCTATGAGTTTTGAGATAGGGAAATTGCTTTGTATCAATAGATTTGCTTTCATTGTCAACAAATACATTGCTACAATCTAGTAAAT---TTTGCCAAGAGTACATTGTGTATCCATTCGAGAGCTATCACGC-GGGGAAACTGTATTTTACATCTTCTACTGAGTGAGTTATTTTTCTGGTAAACAACTTGATACAAAAGAGACTGAAC-ATTCATTGATTTTAATAGCTATGCTGAATTACAGATTAATGGTCCAAAATAAAATATAAACTGATTTAATACATAATTCAGCATGAGGGAGGGAAGTAGATCTTTTTCCAACTGAGTACAGACCTGATTCTTTTCTTCTGAGGATAACTTATTTCCCCGTTAATAACTGTAAGACTGGCCTGAACCACAGCCAGCCTGGGGAACCCTTTGTTCAGAACTGTTTAATGCTGTATTGACTAAGGAGCAACTTGGGAGTTGAAAAACAGATTTCATATTTCAGATTCTGGCTTGAGAGTATTTTTAAAGTAGAGCGCTAGGAGTTCCAGTCGACAGACTGCGAAAGCTCCTGGCCACTGTGCCTGGAAATGAGATTCCTAAAGAGCCAAGCTCAAGGATGCTGAGGCGGGCCTCACAGGAGCAAGCCTTCGAGCACACAGCAGGTACA--GTGTCTTGCACGTCTTG-ATGACTCTTCGAACATATTCCTTGGATGCTACTTGAATTTAACACTCCCCCTCACTGCCCCCTGAAATATAATTTGGCTTGGTAAACTTAGGTGTTTACATGCCCACGGA-AAAATTTCCTCAGATTTATTCTCATTACTTACCAGATTGAACACCAACAGACCCTACCTAACAGGGGACAGAGGAGCTCTCAGACCACAGCCAACACACACACACACACATCCTGCTTATCACTAGGAGCAGACACTCCATCATGGGTATGTACACAGCTCTCTTAAGAGGATGGCAACCTGTTGGGGTTAAGCCAATATTATTGGAGCAAAAAGATGAGAGTTCTGAGAATATTTTTATTAG----TTATGTTTTCCAGAAGTGAAACTTTAGGTTGTGTGAATTTCATCAG-AAATCCACACAGGAATTTTGTTATTTGTAATTAGAAT--AAGAGTCCAAAGA
s HiC_scaffold_1 132240977 3680 + 233722169 CTTGGTTCCCCAAGATGAAATCGTATTTCATAAATGCCCCATGATGACTACATCAACTATTTTTAAAGGAACTTTTGGGATGGAACATGGACTTTGGAGTCAAACAGACCTGGTCTGTCCAAG--------CTCTGTATTGTGTGACCGTGACCAAGTTACTCAACCAGTTTGAGCCCTAACTTTTCTATCTATAGTG----AAAGCACAATGCATGTCACACCAGGTTCTTACTGTAAAGATTCAAACCAGGAAACAGCTCTGACACAT-----AAGGTCTCCTAGATAAATGCCAGT------------TCTCAGTTA------GCTAATATCAATATGCTCTTAAAAGCTCACAGCCAAACACTGTTT---TAAGTAGAcaacatg----ttttgttttatttctgatttcaatGGGAATATATTCAGGTGGGTGGGTGAAAATATTCCAGGGCCTTGGGATAAGAAGACATGGAGGAGCCATGCATCTTGGCTTCTTGGAGAGAAGCAAAACATATACAGAGCTTGCCCTTCCACTCTATCTGAGGTCCCCCATTTCTCACAGAGGAGCTTACCTTCT--CCCAAGACTTCGGTTCCCATGTGGCATTTCCAATTTGCC----ATGTACCACTGCAGAGCAGGGCTGTCTGGAAGGCACACGAGGTCAGCTGTGCCGCAGGAAATGGGCCATCTCTTGGTACGATCCCTGCTACTGTTGACCCAGaacattactttttaaagactTTACACCCAGCTTACC--GAATGTAAGGAATGACCCCATTTATATGCGCAAGCTTCCTGACACCTGTGTTTAAAGACAACATCTCCATATCTGTACTAACAACCTGATGATGCATGGCCTTTTCAGGACCTAGTACCATATTTTCATAATGAGTTTTTCAGGTATCAAGAAAAACAATA-CTCTTCCTCAGGTATTTGGCTGTTTCCTTCTGTAATCTTAGATATAATTTAAACCCTATTTCTTTTAGGTAATCTTTGTTATGTTAGACAGTTGGTCAAACTGAATCAGAGTCATACCCATTTGGATTGCCTAATTAAACTGAAAAGAACTGCTAGCATGTT-GCTCTAAGGATTGTATGAAATGGCAGCTATACAGAACTGATAAATTATCAGAAAGCAACTGCATAAAAAAGGGAAGGCC------------TCA-------AAGAACTTGACACCAG------------------------------------------------------CAAAAGAAACGTA---TTTGTTCTTCTCCAG----AGAAAGTTGAA------------------GATGGTAGAAGGAGAA--------------TGTAGCACATGTGAATTGCAGCGCTGACCTGGATTttc-----taaatttgtgtgtgtgaatgtgtgtgtg----------------------------------tgtgtgtgacagagagagagagagag------------------------------------agagagagagagaga------gagagtatgagAGTTACAATGTGTAATTC--TTAAAGGAAAGT-----TCCACAaactgtgtatgtgtgcacatgcatgcaggCAGgcacactgaaaaatattttaagaacttgTCAAAAAGTGGTTATAGTACGATTTCTTAACCTAATAAAACTAGCAGAAGCGGGAACATAGTTGTGATCTAAAATACAATGTAGATATGTTGTATTAActaatgaattttattgttaGCAATTATATTGTCAGGCTCCTCTAGAACAGATGAGTAGT-AGTCACTTGCTGACAAAAATGaggcaaaacaaaacctaaagaaAAGAAGTCCAGGTTTAATGTCTAACAACAGAATGTACTcccatataaaaaaaaaatcagcataaaCTGACTTCGTTTGCAGAAATGGGGTTCAAAGAAACCCCTACATGGAACAACCCCTCTGGTTTTCTGTTCAAGTTTCACTTTGCAATTATAACTTGTATAAGTCAgtttgagagaaagagaaaaaaaaactgggagaGACAATTTTCCTCACTTGCTAAATCATGGCTCAGAAACGTGTTATAAAACAC----CAAGAACGGAAAAGCCATTACatagaatataaagaaatacttGAGTCTACAATGCCATTGAACGCTTGGATTCAGTTTCAGCAGACATGCTCTG-TATTCCCACAAGAGTCTGGAAAATTAActcctatttttttctgtctggGGTAGCAGTTCGTGTTATTATTTGATCCATGGCTCAATCTGGGTCAGACCATTCTACAGTAACACAGGTAGATGCTGAAACAG--AATCTGTTGAAAAGATTGCAGAGGAACTGCTCCCCTAAAGC------------CATTTTGAATGGCAGTCAGCTATGGTAAGCACAGATGAAACTCAGCAGTACCCTTTCGAACATGGTCATGCAATTTGTCAGCTGCAATCCTGCAGCAGAAGTTCCATTTATAATGGCTCATTAGGAAC--TGGTAGTATCCTCTAAG---------AAATGAGTATCACTGGACGCATAGTACTTGTCAGCTGTGGTAATGTAGATTTGCACTTTATGGATTAGCTTAATTTTACAATATGTAGt-tctaaaaagaaaattccat-aaaCTAGTGGGGAGAGGCCTTGGACTTAAAGCATTC-TAATTTATTTGAAACTAGTTATAGAAAGATTTCTTAACCTATTAAATGTAGCAGGATCAGGGAtgtatagctcagcaacacagtgctgcctggcaagcatgtgtAAGAACTGGAGTTGATTCCCAatatcagaagaaaagaaagaaaacaatagtaGCAGAAGGAGGGAAACAGTTATGA--TTTAAGATATATACAATGTTTTGTACtaacaaatgtatttt-attgtcAACAActacattattaaaatataacaaataaacTTGCCAAGAGTACAACATGTATCCATTTGTTAATCATTGCACAGGGGAAACT--ATTTTACACTTCCTACCCTTGGAATTATTTTTCTGGTAAACAACTAGACATAAAATAGGCTGAACCATCCATTTATTTTAATAGCTATTTAAAATTACAGAATAATGgtccaaaataaaatttgaactgATTTAATACGTAATTCAGCATGAGGGAAAAAAATAGATCTTTTTCCAACTGGAGAgagatgtaatttttttcctttgagaataagttattttccccttaataagTTTAGGACTTGCCTGAACTATAGCCAGCCTTAAGAATCCTTTGTTCAGAAAT-TCTAATGTTACGTCGTCTAAGGAGCAACTGGAGGGTTGAAAAATAGATC-AGTATTTCAGTTTCTGACTCTAGGCTGTTTTTAAAGTAAAGCGCTGAGAGTTCCAATTGAAAAACTGCAAATGCTCCAAGACACTGTGCCTGGAAATAAGATTCCTAAAGAGTAGAGCTTAGGGATGTTTAGGAGGCGCTTACAGAAATGAGCCTTCAAGTACATGTAAAGTACGGTGTGTCTTGCACGTTTTGAATGGTTCTTCTCAGATTTTTCTTGGATGTAACc--aatgt---atttcattttgctttcttctg-----tcaTTCTTTTTGGTAAACCAAGCAGTTTAAATATCCAAGGACAAAATTCTCACAAATGTTCTTTCATGGCTCACCGGATCAAACACTATCAGGCCCT-------------CAGGGAGGGTCTCAGCCCACAGCCAACACGGAC-----CGATCCCTTCTTATCACGGGAAACAGGCGCTCCTCTGTGGGTACGCACTCAGCTCTCTCAAGAGGACCTGGATCAG-CAAggttaaattaatatttttggagCAAAA--ATGAGAATTCTAAGAAGATTTTTTATGGCAAATTGTATTTTCTAGAAATGAAACTTTAGGCCAGTTGTAAATTATCAGAAAATTCATAAAGCACACT--ACATTTGTAACTGAAATTaaagaattcagaaa

a score=4337
s chr3           145815782  99 + 160039680 ACTCATCAG-CAGTATTAACAGTGTCCTGTTCCAGTCCCCT--AAATGT-CACCTGAAGTTCTCCAGTTACTGTCCTAAACCTGCAGTCACCTTGGATTCTAG
s HiC_scaffold_1 107286960 103 + 233722169 ATTCATCTGTCAGCTTTTACAATGTCCTGCTCCAAACACCCTGGAATGTGTGCTTGGAAGTCTCCAGTCACTGCCTTGAACCTGCAGTCCCTTTGGATTTTAG

a score=3460
s chr3           145815831 52 + 160039680 CTGAAGTTCTCCAGTTACTGTCCTAAACCTGCAGTCACCTTGGATTCTAGGA
s HiC_scaffold_1  25731576 52 + 233722169 CTAGAAGTCTCCAGTCATTATCCTAAACCTACAGCCACTTTGGATTCTAGAA

a score=56742
s chr3           145816630 4127 + 160039680 [encoded data, 4662 characters]
s HiC_scaffold_1 132251049 4256 + 233722169 [encoded data, 4662 characters]

a score=87605
s chr3           145823999 4427 + 160039680 [encoded data, 4804 characters]
s HiC_scaffold_1 132263869 4161 + 233722169 [encoded data, 4804 characters]

a score=11473
s chr3           145831746 286 + 160039680 AAAACTGGGTAGGGT--CATCCAGAGTGACTTAAGATCTGTAATGTATGAATCCTGTATTGAA-ATTCAAAATATTCCCCATACGTTAGATCTGTTTGCTTTTATGTTATAAATGGCAGCGGGCACCTTTTCTGAACTCCCGGAAAGTCAT-GGCGTTTTGAGTGCTTATGCCTATTGCTTGTTTTGGATGGCGTGCACGGCAAACTTTTACAGCTCTCCGCTTTCTGGAAAACTAGCTT-AAGATGTAGACATTTGTCGTTTTCCTGACTTTTTAACATGCTGGATTTCT
s HiC_scaffold_1 132270816 288 + 233722169 AAAAATGTGTTGAGTGGTTTCTAGGGCAGCTTAATGCCTACAGTGTACTAATTGTGTACTGGGTACACAAAATCATTTCCACACTTTAAATCTGTTTGCCTTTCTATTAAAAATGACAGCGAGGAACTTCTCTGAATTCACAGAAAACTGTGGGCATTTTGAGTGC-tatatcttttgctt-ttttggatAGCATGCATGGCACATTTTTGTGCTTTTCCACTTTCTGGGGAATtggtttaaaaatttagaaacttgTCACTTCCCTGG-TTTTTAAcatactaaattttt

a score=57187
s chr3           145832015 2836 + 160039680 TAACATGCTGGATTTCTGCAGGCCTTTTGGCAGCTGACACTTATTTTCATTTGGCCTTTGGTGGCAGAGCACTGTTTTCTTTGTCCTCTGCAGGCTGAAAGTCAGTGGCTCTTGGGCACTCAGAACATGCACTATGTTCCCACCATCAACAAGGAACGGGAACACGTGGATGTAAATGGTGGATGTAAATGGTATCTGTCAGGAGAAGTGTCAAGACCAATGGAGTTCT--CTTTGCTTGTCAAGTGGGAAACTGATTGTCACTTTGAATGTTCTTCCAGGGGATAGTCTCAGGGTGACATCTTTAGGGAGAGCCTTTGGAATCTCTGGAACTTCGTCGTCGTTGCTCC---AGACAGTGCAGGAGTATCTGT----GTTATCACTGG------TTTTGTCACCTC-GTGCACTCTGGCCCCAGTGGCTTACCTTCTGTGCTTCTGTCTACACTTCTTTGAAGCCCCAGGTCCTGCAGATCTGTGCCCCGATGCACAGGCGAGTG--CTAGAATCTCAGCTGGACACTCTGACATGCAGAACTGTAACGGTTAGGCTTCATCTACAGAACTGAGACAGTGGAGCCCTTCCCATGGCTCATTTAACTTTACAGATTGCTGTTTGTGAGCT---GTTTCCTATAAGCAGGTTGGTCTTAATATGAGG-GTTGTTGGAAGTATCATTTGATCAACACTCGTATCAGCTACCAGAGCAGATGTTATCAGTTGAAAAGTTACATCTTACATAGTATATAGTCTGAGTGACATCAAGGCTT-TCCCCCATACCTACAGAAAGAACGATGTCTCTTGTTGGCAATTGTTTCTATCCCCAAAGTTA-GTACCCTTAGTTATATGGTGATCTGTTACTAACTCTTTGGATATTTTCTTTGGATGATCAATATTTATCATATAAGTGAATGGGTT--TCTTGCGTTTAATGGA---AAAATGCAAATCAAATTGCTTAGGAAATAAACACTCTCATATAAA---------------GTCCCAGG-CTGCTAGATCCATCCCTTCAGCAATGT----CAGAGGCTGCAGACTCTCTCCATCTCCATACCCAGTTGCCGCTTggtggctgcaccagtttcaggcaccacatccatacc----------caatatccaaaggAGGGTGAGGGGGTT----TGTTCCTTCCTACGGCTATGGGAACGGCACAACAGATTTCCCGTTCCCGATCAGAACTGAGCCACTTGGAAAAGAGGTGAAACTAACATCATTGACTTGTTCCTGGGAGGTAGCTGTAGGGACGTGGTGGTGACTGAACGGCACATGCAGTGTCAGATCACTTTAAACAATGGTTGGCACTTAGAAACCGAGCTTAATAAGATTTCCCATGTAATTGG-TGATGGAGAGTACCTGTCCTACTAAAATCATTATAGAG--CCCAGGTTGTTGACTGTTGATGGATAGGTTCCTCTGTTCTGATTGCTCTGGAGTCTAAGCTGAGGAGATGACATAATGACAAAGAAGCCATTCTGCAGTTGTGCCA-----AAGGACAAAGGCTCCATTCCCCCAGGAGAGCACAAAGCAGGACTTTCCATTTGAGAAGGAACTGGGCT---TTATTAGTGCAGAATTCCCAGGGGAAA----------------------------------GAACCCAGGATTGTCACCCAAAGGAGGACTGAGCAGAAAAGA--TCGTTTGATCCTGGGTGTCCGAGAACTGGC-------TATGTAAACCC-TCCATTCTCGGG--AGGGTTGGTCCTGAGAAGTGGGTGAGGCATGAGCCCATCACCGATGAGATCTGTATGATGTGTGAGAACACACATGAGAACACACA-GAGCTTGGCAGGTGACAGGAATCCAT------TATCTTCTCATGGA-------------TTCATCA-------GTGGCTCACAGGCATAAAGGCACGGTGACAGTCA--ACCCCAAAATTAAATGTAATTATCAATTATTAATGTTAGGTGAGCATTCACACACCTTCTTTTCTG--TCTAATTTGTTCAGCAG----AGATCGCCTGTTCACCTCTAAGGGCATCCATTCTGCTGGAATTTTAAAATTCTCTTTTGGTTTTAATCCCATCTTTCCTCCATCCTTGGACCCAGCCTCTTGCTTCTGATTGAATTTGCTTGAATACCAGAATACTCGCCTCATGAATAACCAACCATCTGGGGTGTTTTCAGTAAACTCCGTGGGAGGAAAAACGCGATCACACACTAGCGGCTGCCAAAAGCAGTTTTGAGAGTACAACTCTTAGAA-TCTAGAACAGGAAATGACCTCATCTTAACCTCTGGCCCACTCATATTACAAATATAGGTACAAAGATGCAGAATATCCTGGTTGATTTTTAGTGCTTGTCACTAGAAATAAATCAGTAAGTTTAGAAATCCAAGAACTCTGTGGAGGAAAGATGCAACAGATATCT--CAGTCTGTGGGAAACGTTTTTTTAGAGATCTTATTCATGAA-------------------------ATGGTT--------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTATAAGGATTCAGTAAGAGGGAAAGTGAGC----TGTTTATATAACAGTTGTACATATTGGCCATTCTATAAATATGAGACGTTCCCAGACTAATCAGAAGATGAAATGCCATTTATTCAAC----TCTGATAACTTGAAACGTTCAGGGATTAAAT-GTTTCCAGTTATACAGGCCACTTTTCTAAAACAATAATTCATTCATTCGTTTTTTGGAGACTTGGGTCAGCTGCTTAGAATCAGGAGACCATCTAAGAAGCTCCTTTTGTTTCTAAGCA----TAGGTAGCTTTCCAGCAAGGCTAA-----TAACTAGTGTAGACATTTTGAT---TGAACTTAAATGTCACCTCCTCAAAGAGCCCTTGTCTAAATAATGTGCTTGCCTTGTTTCTCAAACAGGAAGTGTCCCACACGTGATA--------------TTATAACAAACT----ATATATGACTTACATG---GTTTGAGTTTTATAACCACAGAGGCACtatatg
s HiC_scaffold_1 132275563 3030 + 233722169 TAACATAATAAATCT-TGCAGGACCTTTGGCAGCTGACACTTA----CATTTGGCATTTGATGATAAATCATATTTCTATTTGTCCTCAGC-GACAGAATGTCAGTGGCTCTTAGGTACTCAATACATGTGTTGTATCATTATCATCAACAGGGAAATGGACTGCCTGA--GTTAAT-----------ATGTTATATGTCAAGCAAGCTGACAAGACCAGCAGGACTCCTGCCTTGCTTCCCACTTAAAAAACTAAATGTTGCCTTCAGCTTTCTTCTGGGAAACTGCCTTGCAGTGACATGTTTGTGGAGGAGTCTTTGAGCATCAAGAACTTTGGCACGGTGTCTTCTGTAGATAACA-AGGGGAATCTTTCCAAGTTTTGCCCAGAGTAATTTTTATTTCCCCTATGTACTCTGGCTCCACTGATTTTTATTCTGCAGTTTTACCTGC-TGTCCTTGACACCACATGTCCT-CCGATCTGAGCACTGGTTCAGAGATGAGTGTGCTGAAGTATTAACACCTAGGTCTGACACACAG--CTGCAACAGTTGCTTTTTAGCTCTACAGTCATGGAGGTATAATCCTG-----GGGTGCTTTAGCTTTACAAATGA---TTTGTGACCTACAGCTTTAGATAAGCAGAT-GGCATTATTGTTAGAAGTCATTATGAGTAGCATTTGATGAGCATTCTTACTAGCCAAAATAACAGATATTATCAGGTAAAA--TCAC-TGTTGCATACTATATAATTTA--TGACATGGAAACTCATGATTTATACGTGTAGAAAAAA-AATATCTTCCATTAATAGTCATTTCTGCATCCAAATTTAAGGAGTCTTAGTAATGTTGT---CTGTTACTGACCCT--GGATGCTACC-------GGTCAGT-TTTGTTATATAAGTAAATGAGTTGCTTTTACCTTCAGCTGACAGAAAGCTCGAGTCAAATTGGTTaagaaaatgaagtttttttATATATCAAGAACTCAAAGGGCCCCAGAATTGGTAGATTCAGGAACTCAACAATGTTCATCAAGGACTG-AGATTCTT---GGCTGTGTTCTCAGAT------------CAGCATGAGCTCTAAGAaccatgtatatatattatataggaCAATGTGCCAAGGAAGAAGAGAgattacacatttttctttctatggTTCCGGGAACCTTGCATCAAATTTTCCCTCACTGGCCAAAACTGGGTCACTTTCAGGAGAGATGGAACTGCTATGATTTATTTAG-ACTGGGAGGCACCTGAAGGGATATAGTGATAATTAAATGACACAATCAGTGCTAAATCCTTT------------GGTACTTAAAAA--AAGCttgataa-attttatgtataattaaATGATGAAA--CATCCGTGTtgttaaaattgttaaaaatatccCAAGTTGAGAGTAGTTAA-----GAGCTTCTTGACTCTTGTGGAAATGAGTTTTGTGATGAGAAGAGAGTA-AGTATCAACTGTAATTTTCT-CAACAGTGCTACTTGTGTAGACCAAGACCTGATGCTT--ATGGGAATACAGGGGAGGACTCTTACCATAGGAAGGGACTGGAACAAGTTACTAGCACAAAAccccaggggggaaaaaaaaaaaaaaacaaagcataagtGTTTGATAGGAACCCAGGTATATGATATAAAGTgggacaaagcagaaaaaaaatgacttgaTTGTAGATCTCAGAGCACTCACATGGAAGTTTTTAGATTCATCTTTTCTCAGGCTAAGACTGATCCTGGAAATCTGTTAGGGAACGAAGCTAGTGTTGATGAAATCTATCACATATGTGA------ATATGAGAAAACGCACAAGGTTAGCAATTAA--GCAAACCCTGACATCTGTCTTCTTATAGAAAAGCCACAGATGCTCACCATTTGCGGGTAATTAACAGCCTCAGAGCAACTGTGTGATTGATtattccaaaaa-------aattttaagttactaA------GTTAACACTCGCATACCTTGTTTTCTAGATACAGGTTGTCCTTCTGCATCAGAATCCTTGTCTGTCTCTGAGATCTCGCATCTTTCTGGAATTCTTAAATTCACTTCTGAATTTG-TCCCatctttcctc-------------------ttgcttctgatTGAATTTGGCTAAACACCAAAACACTTTACTCATGAATAACCA----TCTAGGGTGTTTTCAGTAAACATTATGGGTAGGAAATAG-GATTACACATTCATGAATGCCAGAAAATGTTTTGAGACT-CAACTCTCAGAAATCCAGATCTGAATATGAcctcattttaaaatctgttcc-cTCCTCTTATAACTATGG--AAAAAAGTGCTAAATATCCTGATAAATTTTTAGTACTTGTCACTATAAGTAAATCAGTACGTTTAGAAATCCAAGAAGTCAATG--GGGAAAATGCAATGGATATTTAACAGTCTGTAGGAAATG--TTTTCAGAGACCTTATTCATGTAGCAAATATCcttatagctgggtgtggtggctcatgcctgtcatcccagcactcgagaggctgaggcaggaggatcattgtgagtttgagaccagcctgggctacaaagtgagctcaaggcctgcccaaaTTGCATagagagtccctgtctcaaaaagacaaaaacaaaacaaaaaaaatttttataaaaatgcaat--gAGGGAAAATGAaccaaatgtttataaaattctcCTACACATTGACCATTCTATAAA--------GCTCTGAGAATAATCACAAGATT-AATGACATCTACTTGATTCTATCTGATAActtgaaattttcaatgattaagTAATGTCCAGTATTATTGACCATTTTTCTAATTCAAGAAACCCTTCATTAGTTTATCGGAGACTAAGGTGAGATGTTCACAATCTGAGGATCTCCCAGgaaattca-tttgtttcttagGAATTCTGGATGATATTCAGGCAGGACTAGATACCTACATActattaacattttgatttcttAACTTAAATGTCACTTCAT--------CCTCAGATAAGTA--------TACTTATTTCTCAAGCAGGTGGTATCCCACACACAGTAGTGTTCCTTCATTGTTCTTACGATTTCTACCTACATGACTTGTGTGCATATTTAATTTCTGTCTCCACATAAGCATTATCTG

a score=53283
s chr3           145836528 4570 + 160039680 [encoded data, 5011 characters]
s HiC_scaffold_1 132279115 4275 + 233722169 [encoded data, 5011 characters]

a score=29966
s chr3           145845612 2901 + 160039680 agagGTTGATTTAGTACTGAGATGTTGTGCAGAGTTGGTTTTTCACATTGAAAAGTAGTC-AGTATTAATTCGAACTGTTTGATTTTCAACAGGTTGACATGATGAAAGAGGCTTTGGAAAAACTTCAGCTCAACATAGTAGAGATGAAAGATGAAAATGCAACTTTGGATGGTGGGGACGTCCTATTCACAGGTATGTGTGCACCAATCTT---CTATTCTGATGCCCGGTGGTTGGGATGTCTTCTTGTTCTTCTAGTCCTATACCAACCCATACTTGCTTGTGTCATTAACATGTTTCTTTAGTCATCAAA----TAAATGCTAAGCACAG-AGATCTAAAAAGTTCAGAAAGTCACAGTGAGGAAGAAAGAGTGGCTTTCCATTCAGAAATAAGGGCTGCGATATCTAGATACGTTTCATGCGTCCTTGCAATGCAGCTCTTCCTCGCCAGAGCATGCACATGCATAATGTGT-TATTCTTTACAGGGATAGTATTAATATGTAA-----------------------CATGGTTTTCTACAACTAAGTTTCTATGTTGGATAGTATTTCCATTGCATCACCTGGtgtcttagtttgggtttccattgctgtgaagagacaccatgaccaaggcaactcttataaaggacatttaattggggctggcttacaggttcagaggttcagtccattatcaccaaggcaggaacatggcagcctccaggcaggcatagtgcggaaggagctaagagttctacattttgatcagaagacctccaggagaagactgataacaagagaagacaggagaagactcttaGGCAGCTAGGATAAATTCAAGTAAATTTCTATGCAAATTGATTTGGCTTTGTGCCAG-----------CAGAACTCAATGAA-CTATAAATGTTAATACGATTACTGGTCTAACCAGAAT--GCATTTATGAT-----------GGCTACTAAAGAAACAATAGTTATAGCATTTAACCTTTCCACTTCTTTATGATGATGAGTTAT----TACATAAAATCTCCATGCTTGAACACATTCTGGTTCTA-------------------------------ATTTATAGTGAGATTTTTGTTTGCCCCTAAATGTCAATGAAT----------TTCACCATTGTGGTCCCAATACAGACATTTGTCCTAGAGGACTAGAGAAAAAGTGTGAG--------CTACAAGCACCAAGCTTCTTGAGAGTAAGTCTGAGAGTCTAGCAGATGAATCCCAtatatatgtgtgtgtgtatgtatgtatgtatgtatgtatgtatgtatgtatatgtgtatatatgtgtgtgtgtatgtatgtatgtatgtatgtatgtatgtatgtgtatacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaCACATCCATAGTATGGTGACCTATGTTATTTAGAAAATGCCTTGATTTACTAACATTTAAGTTTAATAAATATTCCTGGGGAGGGAGGACAGAGAGGAAGAAGAGGCAGCTTTAATCTGTGACACTTCAGTGTCTTCTTGCTTGGTGTCCTATGGCTGTGGCTGGAGCCATTGTAATGCCCATCTCTGAAG-GTCACTATTCAAACCATGGCTTTTGGGAACAGTATCC-----AGCGATGCCT-----GGGTTGT-------CTGACACAGGGGAGGGCCCTGCCTCTGG-ATTTGTGCTACATGTACCTGGAGTTCTCGAACACACAATGAGG------GTATGC-------------ATCCACAGCTCTGGTTGTGCCTGGGGCAGCTCATCCATTGTCTGGCTCTTCCCAGGAGGAGCC-CTCAGGACAGTCTCCATGCCCCCTGGGGACAGCACTGTCACTCTTTTT-GACAGACCAGAGCAGGGGTCTGTTTTCTTGTTTTCTCTTACAAAATGGGATTCTGTGAGAA-CTAGATGTGTAAAGTCGCGCTTCCTTACAATGCAGTGCTTTCTTCACCAGAACCTATGTCTACAGTAAT----ATAACTTATGATGAACAGGTTCAAATGTCCTTCAAACCACTGCTCAAACAAGGCGGTGTGTTTACAGCGAGTTACTATTAGATCTGAACAGCTCACAT--GCACTAATCCTGATAGTCCCT-CAGTGTGGGCCAC--CATACGTCAGGCATCTCTTCCTTTGACCAGAGTTCTTCTCACGGC--------------------------------------GCACCAAGT-CTTTGCCTTGCTGCACATGGAGTCTAAGCC---CTGATACTGTCTG-----ACTCTTGCTTTACTCATTCATT----AAGTTCATATCTTAAGACTTATCCTATTCAAAGCTGAgggcctggagagatgactcggtgagtgaagcatttgcctctcaaggctaaggatctgagctctactccccagagcccacataaagccagaaacagaaccacacgtctgtagtcccagtgtgtgtacagcaagaaatggagacagaattcccagaagagtgggagctggctggcctggtttgagcagtgatgaccaagagactctgacttattctaggtagatagatagtttaaggaattaacacccaaggccgtccttcaacttctacacTTGAGCCCCCATTGTCTC---------CTCCATCTCTCCCTTGTGAAaa----cataagatttgccatttttcacatttttaagtgtaaaattcaTGAACCAT---AAGTAAATATTTCCAATATATGCAAGTAAGCCCCTCGGTTTCTAGATCGGGCGATGCAGGGTAAGTAATAGAATCCGAAGCACTTCCAGCGTTCTCTCTGCCTCCTTCTTCCCATGAGTCAACGTGTCATTAATAATTCATCAGGAAATGGACAGGAGAAGAGCTACTCTCCAG-TCCACTTCCTGCTGGGAAATCTGTCCATCATGCCAACTGCTACTGGCAAAAAACTTGTTTCCATTTTATTTCCCTCAAATAGATAACATCGACCTACCCC------------CTTTATTTATTTAGTTTGTGAAATACAGGCTTATATAACTTATGAATATGTACATGCTGATAAAAGACCAGTTTAAAAAAAAAAGCA
s HiC_scaffold_1 132286757 2525 + 233722169 AGAGTGTGATTTAGTGTTCAGGTGGTTTAGACAGTT-----TTCTTATTGGAAAATTGTAGACTATTAAtatgaatcattttatttttaacaggttGACATGATGAAAGAAGCATTAGAAAAACTCCAGCTCAATATAGTagaaatgaaagatgaaaatgcaaCCTTAGATGGAGGAGATGTCTTATTCACAGgtataattatgtttatttttttctatccaaAAG------------------------TATTTCTAGTTTT----TGACTCATAGTCACttgtttttttatggtttttttttcattgctgaaataataaatgttaaatgtaggaaatttggaaaatgcagaaaagcaCAATGAGAGGAAAAG---GACTTTCCATTCACAGATAAACATCTCAATATTTAGCTGTAT-------GTCCtttcag----------------------atgcccat-----atttgcaCATTTTTTACAAGAATATTATCAATATGTACATTATTTGTATATATCTTGCTTCTGTGATCCTCTACAATTAAGTTTATGAGTTGGCTGAT-TTTCCATTCTGTGACTGTTTATCT-AGTTTGTATTT-----------------------------------------AAAGAATTCTTAATT------------CAAGATTAGTG-------TCATT--TACCAAT-------------------------------------------------------CATTTTGTT---------TCCAG----------ATGGCAAGA--------------------------------tgaattcaaataattttctatGCAAATTGACTTGGCATAATGCCAGATGAATAATAGCAGAACTCAACAAAATTACAACTGGTAATAC---TATTGATCTAACTAGAATCAGTTTTTACAATTGGTATAATGTGATTACTAAAGAAATGGTAATTTTAGCGTTTAACCTTTCTAGCTCTTTTTGATCATATGTGAAATCATATGTAAAATCTAGATTCCTGGATTTATTGTAGTTATACTCAGGAGCAAGATAACCAACAGTAATTTTGATTCATAGGAAGAGTTT-GTTTTCCCCTAAATGTCagagaataaatatttgtttaaccAGTGCAGCCCAGCAGCAGAGGCTGAGCCTCCGGGATTGGGAAATTAGCCCCAGGTAGCTCACTAAAAGCGTGAGGCTTCCTGG----AAGTCTGCTATTTCAGCAGATGTA---CATTTAAat-----------------------------------tgaattcat-----------------------tttatatagGCA---AAGCATGACTGTCTTTgtcttaatata-------------------------------------------------------aaaataatgccttGTGTTGATATAA------------TTACTG-CGTGTGGATATAATTACTGTTCC---------------------AAGACCAGG-AGTGTTTGTTTA-GACATTT------------------TGTTCGGTACCTGTGG-TGGACCCTTCCAGTGGCCCAGCTCCAGGGAGCCA----TCTAACTATGGGTCGTGCAAGTAGGAGTCTCTGGAGCTGTGCTCTCCACAGCTTGTTCTGCCACTGTCACAGGTGGTGGCCCGGCCTCTGGGATTTGT-CTTTAGGCACCCAAGCCCTCGGGACACGGAGCAAGGAGCCGGGGAAGCCTACAGGGGTGGGATTCTTAGGTCCTGCTTTGCCTGGGCAGACTCAGGCATTCCTCAGGTCTGCCCTGAAGTTTCCTCTTAGAATATTCTTTCTGGTCCTTGTGGATGGGATGTCCATTCTTTTTTGACAGCTCTGAGCAATAGCCTGTTT---------CTGTTAGAAAACAGGCTTTTGTGAAAAGCTAGATATATACA-TTGCATGTCCTTATACTACAA--CTTTTTCGATCAAAACATAGCCatataataaatacaataaattagGGCAAGCAGATATGAGTTGCTTTTGAAATATGGCACAACCAAGCTGTGTTGTTCACGGTCATTCAGT----TATCTTAACAGCGGAAGTAAGCCTGTGTCCTAAAAGTCTCTGCAGCGGACAGCACGGCTTATACCCGGAGTCTGTCCTTTTGGTCAAAGGTCTTCCCACAGCATCTCAAGCCTGATGCTTTGGTCCCATCTTCTAAGCAGGCATCAAGTGCTGTGGCTCGCCTTAGCTGCTGTCTGAGGCTTTCTGATATTATCTGTAGACCTTTCTACTTGGCATATTCAGTGTATAAGATCACATCTTAAcagttattttattcaaaactgaga-------------------------CAGTGTTGGCAT-------------ATCTG----------CTCAGAAC---------------------ATCATTCATC------CCCAGTGTCTGCTc--------------------------------------ctgatttctcttcttttctcttttcctttctctcttctctctctctctct---------------------------ctctctctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctcggtaaaagatatataaaacttgCCATTTTAACCATTTCTAAGTGCATAGTTCATTCACGTTGTTATACAACCATTACTA------------------TTCAATTTTTGGATTAGGTAaagtttgataaaaaa-aaaatctgtggcaCTTCCTGTATGTTCTGTGCCCTCTTCCTTCTGGACCTAGGAGATGCATTAATAATTCATCAGGAAATGGACAGAAGGAGCACTGCTTTCCAGATTCTGTTCCTGCTGGGAAATCTGTCAGTCAGGCAAGCAGCTACTGGCAAAAA--CAGTTTTCCTCCCATTTCTCTTGAATAGGCAGTATCAATTTACCTCtacttttaaaagctttatttctctGA---GTATATCCCTCCCTTGTATAA------AGTGTGTGTACACCATTCAGAGACCAAT----AATAAAATGCA

a score=116625
s chr3           145851965 4941 + 160039680 [encoded data, 5358 characters]
s HiC_scaffold_1 132292469 4926 + 233722169 [encoded data, 5358 characters]

a score=6956
s chr3           145858251 235 + 160039680 GTGTAAATCCACTGTGCATTGT-TGTCCCGTTGAGTCACTCTAGTTCTCTCAAAATCACTTGCGTCTGCCC-ATAGTAACACTGACATTCTCCCAAGGAAGCGCATAAATTTGGGAGAGATGTTGAAAAGCCCTCGGCATAGTTCTTAAGATTATCAAAGAAACTACCCAGATCCTGCTTGATCTGCTTGAGGTCATGTATAGAGAAATGTCATTGAGCATGAACATGCCCATATTC
s HiC_scaffold_1  75731341 234 + 233722169 GTATATATCAGCAGTATAATATCTGGCCCTTGTGTTTACTCAAGACCTTTCTCCATCTCT-GAATCTGCCCCAAAATAACATTGGCATCCTTCCAAGACAGTTCATGACTGTGAATAAAATCTTGGAAGGCA-tctatatatttctaaaaattctctGA-AAACTTCCCACATGCTGTTTGATTTGCTTTAGGTCCTGTACAGAGAAAGACTGTTGAGCTCTAACTAGCCCATATTC

a score=43092
s chr3           145863072 2024 + 160039680 GACATCTGCGATTGGAAGTGAACTGTGATTCGTTTGCAGCCGTA----CCTGGG----TCCACCTCCTATAGCCGTACTCCTCCCCCCCCACCCCCCGTGGCCCACACCTCTCTCGGGCTAGCTTGTTGGTTTTTTTTTTTTTTTTCATGATGGAAGA-------CAGAATAATTAATTTTGTACCATCTCTTACCCTGGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTAGTTCCATCTAAGATCAATCACTTTCCTCTCCATGCACGAGCCTGGATTAATTACATGCTATCTGTCACAGGAGGGCAGTGTTTAATATCTGCCCTCAGGAGAGACGTGCAATAATTC--------------TAACTTAATCTCCTTGGTATACCAGTCAGTCCTCCAGTCAGCTAGGAAGGGAGGAAGAAAATAGAACAAAGGGAAGAGAAGGaaggaaactgtacagagggtggacgggtttcagttgcagagggatacgagcccacccaggtgaagaggcatagaagcaagcagcaggc-agggcggctggagcaggaagctgagaactcacatggagttctcagtgcatggaggtttttagctctcaaagccccacctcctgaacctccccaaagtgtgccatcagctggagaccaagagttcaaatatctgagtctggggaggactttcttattcaaaccaccacGTTAAACTCTTAGTTAAAACCCTCTGCAAACTAGTCAGTGAGGAAGGTGCTCGCCCAACCTAGAAACACATGCAAGGCTGGCCTGTTGATGGGCTCTGCTCTGCCATCGGCTGGCCGGGCAGCTCGAGGAGTATTCTCAGCCTCCCCACTCTGAGCTGCAGAGCAGTTATCTTCTCCTAGGGACAGTTAAAG------------TTTTCCTCCTTTTTATTGGTAATTCTGTTCTCTAAAGCCAGAGAGATGGAAAAGTAGTGTTCTTTTGTATTATAGCaaattattatattaaattattatattaaaaGTAGGAAGAATTTTG-AGGTCTCCACTGCA----TTCTTCACATCTTTGTCATGTAAAT-GAGCTGGAGTATAGTAAGTGGAATTCCAATAGGCTTGAAATTTCAAATTAAGTGATTCCGGAATGCTGCAATT----GGAAACGTCTTTTTGGCTTCTGGCTTCTGCTATACTTCCTGAAATAAGAGTGTGCTGCACATGTAAGATTCCTAGAGTGAAGATGAGGGCTGCTTCACAGCTCATTTAAATTGCATCGCACACAGCTTGTTTCTCTCTGAAAGACCAACCATGTAATACAGGTTGCTCAGGCTGTGTTTCCTCTTGTTCTGACTCAGCTTCCCCCATTGCCTTTCATGTCCAAAAATGTCCCTGTGATTTTATAGGTAGCCATATTTTAAAAACAATGAAGGTGGAAAAACCC-TGAATGTGTTTGGATCGTACATGTTTTTTTTCACTGTCTGGAATTTCCTGTAGGAAC-ACTACAA--CAATAGCAAAGCCAAAGAACAAGCAAAAAATGCACTCGTATCAACAGAGAGACTGCAGCGCAAAAATAAAGACATTGTCTCTGCGCTTGT------CCCAGTGCATT-ATAGAGGGTAGCC---AGCCTTCCATTTAGGT--------------------CGCTGACAATCCCATTGCAG-TTTAATAAGA---------CTGCTCACCCATTCCAGGTATGTTCACAAAACAGTAGCATCTTTC-AGTCTACTGTGCCTGTATTAAGAAATTAAAACACTAAA-CAGGCTGCCTCCTTG-TTATACCAACTGTGTGTG---CAATTCTTGGCAGCAGTTACTTTATCTGACAGTTATTCCCAGTGCTGTGTGCCAGCGAGGCTGGGGTGGCCAAAATCAAATGCTTTGGTGAGATAAGGCAATAAATAATCTGAAGCTGTGAGGTCAGAAGAC------------------------CAAGGC---AAGAAGGAAAACATGGCCAAGTGGGAGGAAGGGACTACTGAGGCACACA-TTCTTCTCTTCTGGGCTTTCAGGAAAATGTCAGAGGGTGGGGGGAGAAGGAATGTTATAAGCATTGTTCCGCATGTCCATTATACACTGTA----TAGAAGTGTAT
s HiC_scaffold_1 132298221 1855 + 233722169 GAAAACTCTAGTTGGAAGTGGACCATGACTGGCTTATAGAAATAATTCCCTGGGGCTGTCTACTTCCCAAG----------TCCTGCTTTACCCTCCAT--CTGATGCTTCTTTTCCACAGACTGAtcagttcttaattttttatttaagcaaaAAGAAGGACATTAGAAAGAATAATTGTGTAAGGCATGTCACCCCTTTTTTTAGATCTGT-----------------------------------------TCCAAAATAGATTGCCTTCCTTTCCA----AGAACCTGGGTTAATTACATGCTATCTGTCACAGGAGGACAGATTGTAATATCTGCCCTCAGGAGGGACTCACAGTAATTCTCTGTAACAACTTTTAACTCAGTCTCCTTGGCAT-----TCAGTCTTACAATCATTTggga---gtaaaaataaata-aataaaatgaaaggaaggaaggaa--------------gggcggG--TAAAggacaggaggaagagag--------aggaaagaaggaaggaagaaggaggaaagagagggaggaaggagaaaggagaaggga--------------------gaaaggagg--------------------------------------aaggaagttaggaggtggtgacc-----ttcaAC-------------AGAAAACGCTGATACTCATCCGCCC------------------------------------------AGGAGGCTGTTGGCCCAATCTGGGGAT---TGCAGTTC---CCAGGCGCTGGGGGCTGC---GCCACCTGCTGGTCGGGCAGCAAGAGCCGCGTACTCAGCATCCTAACCCTGGGCAAGAGACCAgttgttttctcctttaagtATCTAAAATTTTGtctagtctttttctttcttgtattaacaattctgttcttt----------------------------------------------tttccacAATAAGTTacaat-ttgaaaatagaaaaaattatgaaGGTCTACACTCcatctttttttaatgtatttgtcaTGTAAATAGAGCTGAAATACAGTAAGTAGAATTCCAATAGGCAtgtaattttaaatcaaaatgctC----ACAATGCAACCCAAAGAAAATGCCTTTTAGGTTTCTGAC-------GTACTTCCTGAAATAACCA---ACTGCATTTGCAAAATTCCTTGAATGACAACCAGAGCTGCTTTGCAGCTCATTCAAATTACATagc------ctgttttctttttgaatgacTAACTGTGTAACAGAGATCACTCAGACAGTATTTCCTCTTATTTTGACTCAACAG-CAGCATTGACTTTTATGTCCAAAAATGTCCATGTTATTTTATAGATGgtcatat-----aaaaaatgaagatgGAAAAACCCTTTAATGTGTTTGGGTTTCACATGGTTTTTT--ATTGCATGGAATTTTCTTTGATGACAACTATCATGCAATAGCAAAACCCATGACAACAATGAAAATTAGCTAGTATCAACTGCATGAttgcaa-ggaaaaataaagac--tgcATTTTTAGTTGTTGGTGGTGCAGGGAATGAATAGTCTGTGGCCACAAGACTTTCCTCTTTGTATCTCTGCTTTTGAAAGACATATTGACAACCCCATTGTAGATTTAATTTAGTCTTATTTTCCGGTTGTCTGTTCCAG----TTCCACaagacaatgattttttttaaatcaaccaTGGCtttattaagaaattaaaacacaaaaccaaGTAGCCTCTGAGTTTATACCAACTGTGTATGGTTCTTTTCCTGGCAGCAGTTGCCTTA-CTGACAG-TATTCCCAGAGTTGTATGCCAATAAGGCTGGGGTGGCCAAAATAAAATACTCTGGCATGATAAGGCGGTAAGTAATTTGAAGCTAGGAGAGCAAAATACCATGCTGAATTTTAACGCTGGTctcaaggcaggaagaaggcaaaaTGGGCCAAGTAGGAGAAAGGGAATTGTAatatgtctgtttcttttctattgagCTTTCA-AACGATGTCAGaggaaaaatgaagaatt-atGTTTAAACTGCTGCTCATCCTGTCCAtttcacaatggaatattaaaaaaGTAT

a score=24210
s chr3           145871887 1171 + 160039680 AGAAGTGCTGTGCTGACTCCGTTGGATACTGTGG-GGAAATCTGGGCATCCCTCAGCC-CTCAGATGCATGCCCTCACACGGGGCTTTGCAATCCAAATCT------CACAAAATGAAAAAGTCAGAAAGTTATACCAAAATAGCAGTCCCTAGCCAGA------GAGATGGCTTACAAATCACCTGAAGGCCTTTCTGAGAACTCATTGC-GTTGGCC----------AGTTCTGGGGATTTAGGTCTAGCAGAGATCCCAGCAGCCT----------------CCACCGGAAACCAAGTT---------------AAGAACTTTTGGTTCA-AGGATATGAGCAACCTCCCAG-GCACCTAGCTTAGAATCCCACATGAAGTTCTTTGTTGACTTTCTTGACTGAGGAAG----CCAGCTCCTCATGGCTCCCATGGGTAAA-----ATGGGTG-----CAGAATAGAGAAACGAAACCATGCATC-AAATGAAAGCCATGGGAGTCTAGAAAT-CCTCAACTTAATTGCTGCCTAAAATCCAAAATGACCCGGACTTGAAATATAATACCTCACTGGGAAATCATTTAGATTCCAGCTCTTCCATCCATCTGACATGCTGAAATTCCTTCTTAAAATATCTCACTTTACCAAAACTCA-CGAATG-TGATCATTTTTCTGAGAACAGGAAGCTCGCCTATGACTCATATTCCTATATTTCTGTGCCCCTCCCCAAacacacacacacacacacacacacacacacacacacacacacTACCTAACAGCAGGGCTCAGGCTTGATGTATGAAGTTTT-TGTGGGACAAGTGACA-------------TTTCAAGACACTGGTAGAAAAGGAGAAATT-----TAACAATGATCCTATGTTGATTTGACTAAAACAGCGTGATTGCCCACAGACTCAAGCCAGCTCTGAGAGCAAAGCAGAGAACCTAACATCTAAATTCATGGATTGTCATCCTGGCTGTGCCTCCAGCTCTCCCCATGTGACCCCATGTCCTGTACTCAGTCTATTCTTGGAAAAAAAA--AAAGTTGAATCAGCCTCGCTAGGAAATTGGAGCATCATTCTTTCCTGCTGGGAACTCCATGATGGCCAGGCAAGGTAACTG-CCATGTACTCAACGTGGGCATGTGCAGCGGAGCTGAATTACACGTGAGGGTGCACAGCTACCTACGAGAAAATAGCATCCGCGTAACAACAAAGCAAC--CAATAAGGATGATCTCAGAGAAGAC
s HiC_scaffold_1 132300068 1149 + 233722169 aaaaGTATTCAGCTGACCCTATGGGATATTGTAGAGGAAATTCAAGAAGCTGTTAGGTGATTAAGCAAATAGCTTTACAAGCGGCCTTATAACCCAAGACTATtacctacaaaagaaaaat--------------------tagtggTTCCTAATGAAATCATCTGAGAGG--TTTGAAATCATCTGAGAAACTTTCGGAAAACTCATTGCCGTTGGCTCATCTCAGAAAATTCTAGTGTTTGGGTTCTGGGATAAAGCCCTGACACCTGAATGTTTGAAAAGCTCTACAGATGATTCATATGCACAGGCCATTCGAAAGAGCCACTGCCTCATAGGATGCCTGCAATTTCAAAAAGTTCTGAGCTCAGGATGCCAGATAACATAC---------------AACTGAGGAAGAAGCCAATCTGTATGTGGTGCAAAATAACAAATTCTAATTAGTAGCAGTCAAAGTAGAGAAA---------GTATCCAAATTAAAGCCACAGTAAGCTAGACACACCTTACCTTTTTTGAGGCCTGGAATTCAACACTGT--AAACTTGAAACACGGTACCTAATTAGGTAATAATTTGAATGCCATC-ATTAAATCCACTTGACCTACTGAAATTCCTTAGAAAAATATTCCAAGTTACTAAAAATCAACGAATTCTTATCATTTT-CTGAGAACAGGAAACTCACAAGTGACTCGTGTTTCCATA--------CcctccccccaacacacacacccaGAAAGA------------------------ACCTAACAG----GTCCAATCTTAATATATGAAGGTTTGtgccagaacaacaacaaaaataataaacttctCACCATTCTGATATTACAGaagaatttacttttaaaaattaatc-atatcGATTCTGCTAAAGAAGCGTAGCTGCCCACAAGTCCAAAGTGGTTATAAGTGCAAAACAGTGAACTTAGAATCCAAATTCACGGATTGTCATTTTGGCTTTGCATCCAGCTCTCCCTGTGTGACCCTGTGTCCTGTACTCAGTCTATTCttggaaaaaaaaccaaagttgAATCAGCCACACTGAGAAAGGAGAGCATCATTTTTTCCCACTGGAAAA-----AATGGCCAGTCAAGGTGAAGGACCATGT-CTTAAGG-----------------------------GTGCAAGTCTACTACTACTTGTAAATAAATAACCTTCATATCATTGTATAGCGCTTGCAGTAAAGATTATTCCAAAGCAGGC

a score=34470
s chr3           145873885 1984 + 160039680 gggttatgggaatgaaccagcaACCCAAAGTGTTTTTTAGGATAAGGGTAAAATCAGAGTGTGGTCTATCAGAAAGATGCCGTACAATAATGATTCAACAGAAATAATGATTAACCGCCATAAATCTAGTTAGATGCC-----ATCTTTCGGGAATGAGTGAGAAGGGAAACGG------------------TGAGAATGGGCAGAGCAGTGAAGGAGGAGAGGCCAGGGATAGGAGTGACTGA--------------GGACTCTGAAGGGGAGACCAGTGCTGAGCT---------AGCTGAT-------------------------------------------------GTGAGGAA----------------------------ATGAGCCGGCCTTGGGGTGATCT---GGAAGACTTCAGACCTTCCCAGTC--------CTCTATGGCCTCCA---------AAGGAACAAACCATCAGAAATCACTGGGCAAAAATACCTTGCTGCATTTCACTGACCTAGATTCATGTTTTGGGAACCGAGTGGTACTCAGATATGTCCAGAGGACAGCTGCTCTGGAGGACGGCCAGAGTCTAAGCCTGTAAGACACTAAAGGGGCTGGCTTCCATTTCAGTTTCCATTGGCAGCAACTGGGGTCAGCGTTTGTCCAATTGTGGCATCTCTG-CCTTCAGTGTTTTCTATCTCTTTTCAGTTTGCATTTACCCACAGTCAGC---CCATCTCCCCCCAAAAAGATATC----------TCAGCATATCTTCTACCTCTACCAGCCTCCAGTTTGTTTTCTTGACCTAATTGATTTGGCAGAAGATTAAAA---AATAATCAAAAGTACAGCTCCTGCATCATGAGCTTCACTAATACGTCATCACAGCGTGGCCCCTGTGACACACAcaccccactccatccctgccccacctcatctcacccctccccTGAGTTCACTGATCCTCCAGCCACACCAGCAGCAGTACCTCTGCTGTGGAAGGGATTAGGAAATGTGTCAGTTGAGTTGGAAGGAGGACGGTTGAGTTTTGGGTTTACTGATCCTCTGAGGAAGTCACATGTGTTAAATGCCTTTGGTGTTGATGGGCGCCC-------CGGCTGCACATAAGTAAGGCACACGGTAAAATGCAGACGCTAAG--TCAGAGCGGGTGTTTAGACTGTGAGCTCTTCTCCGGTCCCTGCGGAGGGCTTCCTC-CCGC------------------------------------------------------------------------TGCTACCACACTCCTGCAAAAC------------ACCCCACTGCTCTCAGGAGT------CATTTCCTTCTCTCATCCTCATCTTTCAACGTGCCTTGTTAGTCTGGCGATCTTTAAGGATATTTCTAAACCTTGTTTCTATGTTACGGACCCTGGGTTGTTGAACTGT----GTTGGATTACTGTATTTCTTACAGCATTTTCTCAAGATACTAAAGATAGCTTTGAGCTAcggtggtggtgcttgccttaaatcccagccctcgggaggcagaggtggggacatctgtgagttcaaggccagcctggtctacagactgagttccaggacagtcaaggctgcatagagaaaccctgtcttgaaaaaaaaaaaAAACAAATCAAAACAGGGGGTTGCTTTAGAGATTGGTGCCC-TAGCCACTCCCCGTTATCT--TCCATGCAGTAGGACCAACTTCAGAGCTGTG------------AGGTGACTCACAGATACAGAGATCAAAATCAAAT-------------------CAGAATTAAATGAAGGTGCTGAAGGAATTATAATTTTCTTATATCTTCCAGTCATTTGTTTAATT---GCTATTAGGAGTGTTATTGTCCAATTTTAAGTATGGTGATAAAACTACTCTAATGTGCCTAATCTGTGAGTGGCGCTCACATGCCATGAACTCACAGATTACAGAGCGCACACATTGAAATTGCACACCACGCCATGTTCTGGAGTTCACCGTGAGAAATCCTGATTTGGCAAGACTAAGATGGAG--------CACTGTG----CCTGGCTGGACCACTCTCCGGATCAC-------------TGGCTGTGTCTAGGGTCCACCAAATGCTAGTTCCCGCTTGAGCCTTTGCAGGCAAGAGGAGAAGAGCATTTCTAGG--GGAAACCGCTACATCTTTGTATGTCAGGTGAAAGCGCCTCCTAAAGCCATGGAGGGATATCACACTGAGTGA
s HiC_scaffold_1 132302304 2035 + 233722169 gggttTTGGG---GAGCCA-----CAAAAATGTTTT----AGCAAGGAGTTTAGCAGAAGGCGGTCTTTCGGAAAGGCATTATGCTGTAATGATTTAACGGGAAGAGAGATTAGGAGTCATAAACC-AGCTAGATGCCTCTGCACAGTCCAGGAACAAATGAGAGGTGGATCTGGACAAGCAGGGCAGCCTCTGAAAATGAAAAGGGCAGTGCAGAAAGTGAGGCCAGTTTGAGAAGTAACAGAACATCGTGACCCCTGGACTGTAAAGGGAGAAAGGGGGGTCAGTTCACCACCTCAGCAGATAATGGCAGAACTCTTCTGTGCCTGGCACTGCGGTAGACCTGGGGAGACGGTGAGGAACAAAGTATCTCCAGAAGCACCCACCAGCATGGGCTGTCTGTGGGGAGGTGTTGAGAAAGAATTTATACTCTCCCTGTCACTGTGGACTCCATTCTCTCCACCTCATAGGAAGGAAAAAACCATGGAAAATTGGTGGGCAAAAGTATTTTGCTGGATTTCAGTGACCTAGATTCATGCTGAGAGAACCGAGTGGTACTCAGACATGTCCAGCTGACAGCAGCTCTGGTAGGCGGCCAGGGTCTAAGCTTATAAGACACTAGCGGGGTTGGC-GCCATGGCAGTTTCCATTGGCAGC-CCTGGAATCAGAGCTCATCCAAATTTGGAGGCTCTGTCCTttactatttatttgtttttatctttatctatTCACACAAAGCCcaccctccaccccaccccaaaaAAGCACCTTTTATAACATTTGCCTACCTTCCATCTCTAGCagcat-cagatttttttcttgactAAATTGATTTGgcaaaaaattgaaagggaaaaataaacatgatTATTCCTGTCTCACAAGGTTGCTTTGTA---CATTACAGCTTGACCCCTGTGAT------------CTTCAT-----------------------------------------------GGCCATGCCAACAGCAATACCTTTGGCGTTGAGGGGATTAAGAAATGTGTCAGTTGAGCTGGAAAAAGAATGGCTGAGTTTTGGGT-------TACTCTGTGGAAATCACATGTATTAAATGCCTTAGGTGTTGAGGAGTATCCTGTTGCTTGGCTGAAGATTAATAAAGCATATTATTAAACATAGACAAAAAAATTCTAAGTGACCGTATAAC---TGAATTATCTTCCAGTCCCTGCAGAAAACATCCCCACTGCCTAACACAATACAAAGATTTGGGCCaccctttaaaaaaatgacatgCAAGAGAAATGAATTGAAAGTAAATGTGCTACCATGTTCCTGTGAAGCCATCCCTCTCATATCACCCTGCTCTGATAATTACTTAATATTTCCT--CcttgtttttatctttcaaattgtCATATTAGTCCAGCAACCTTTAAGAATATTTCTAAATTGCATTTTTCAATTTTGCTCGCTGGACAGTTCTGTTGCCACAGTTAGGTGCCTACACTGCTCACAACA---------------------------------------------------------CCA----------------------------------------------------------------------------------------------CCTGTCTATAGAGGTAAAA-------------------GGTTGCTTCAGAGAGAGGTTTCCAAAGCGATTTCCTTTTATCTCATCTAAAAGTTAAGGCCAATTTCAAAGCTGTGATCATATACCCAAGATCACCTGCTCTTAAAGAgtttaaacacacatacacacacacacacacacacacacacacacacacaccctggc-aAATGATAAAGAATCAAGATAGGTCAGCTATTAG--TGGTTGGAGTTATCAATAGCAATAATGATATGCTTCAGGTATGAAGATAGTGCTAATTAAATGTGAGTAGTCTGTGAGTGGGTCTCAAAGGTAATAAACCCAAGAATTTCACAAAGCACCCATGTAAAATGTGCATCACATC-----CTGGGGTTCTCCATGAGCAATTCTGTTTCGGCAGAACTGTCGTGGAGTTCAGGAACACTGTGTGATCCTGATACAGGTAATTCAGAGACTACACAGTTAGAGACATGGCTGTGTCCAGAATTCACCAGAcatctcttcctgcctcagca-tagTGGACAGGGAGAGAAACTCACTCCTAAAATGTAAATTG-TCCACCCTTGAACA------GAAAATGCCACCTAAAACCATTCA-GAATGATATAATGAGTAA

a score=59658
s chr3           145884949 3147 + 160039680 AGAGACA-TGGCTCTCAGAATGTGTTCATTCCAAGCCCAGCTGTGAGAGCCCATGAAATGTGAAGCCATGTTAGCAATTT-ATAATATTATCCA--GTTATACTGGCTGAGCCCTAAAAGGATGGCCAGGATTTGGAGACTGCCATATATTGCTAGGCTTTCAATAAAACTCCTGATGCATGATAAACCAATAAA-GAGTTATTTCAGCTACCTAGTAGCAATGAGAAGTGATTGTGCGTTGGGTCCTGTATCTCTTGGTGGAGTCTATAATTACTTGCTTTTAATATTGATTTCATTTTACTGTGTTAAGATGGGTACATACATATCTATCATGGAAAGATCAATTATGAGCAAGCCAAAAATGTGCTTGGAATATTTCCTAAC-CATCTTTAAATGCCTTCTTTATCTCTTTGCCTCAGTATTTGACCAATTAAGCCTTAAGTTGTTCTGTCCAACCACTCGGCCCAGGATTTTTTTTTTAATGTAATTGCTGTAATACAAAGAAGGCATGAGTAAGAAGCAGAAGAATAGGGCTGCCTTCCAATCCTTTCAATGAGAAAATTCCCAGAAATGTGGGAAACAGCCGGAAATGCCTG---CTTAATGTGACTGGCTGTGCATAGAGTGT-CAGGCTGAAAGCCAGCGTGTTCCCACTGGTTCCCATTGCTTTGTGGCAACTCCACTCAGGGGAGCCAGGCCAGGCCCTCCAAGAAAGCAGCTTTGAGAGATCC---AAGGATGCTGCTGTGGCCCCAGAGATGCCCAGAGCCCCTTTCTCTCTAGGACTGTGTGCCTTCTGGGTTAAGAAGGTGCCTGCGATAAGAGAGGTAGACTCCACCCTCCCCATGCTTG-GCACCATGCTTGAATTACAGATTGTCACCTCCAGCAGGCAACACTTAGAATATCCTTGCATCTGTCTATTT---GCATACCACCTGACTTGGTCCTTGTGGCTGGCCCCAAGGGGACAG-GCACTCTGTGAAGCCTGTTGAGTTGGTCCAGACATCAATAGCTTCCAGACCCAATTATCACCATTCTGATTTGGTTACTCAAAGTAGAATAATAATTCCACTGACAAAAGTCAGAGACAACATTTGGAAT-GTAGCCTGCCTCTGAAATCTTCCCCACCCCCACCCCCCACAGGCTGGATAGCGTGGCACTTAGGTGGACTTTTCCCAGTTGAACCTGAGGCCTCTGGGGATACAGAGGAAGCTGCTCC----AGGAGGAATTTGC-TGACGCACAGAGAGAGTTTAGGTGCTTTCTGC-TTCCGTTTTGGTGCTGGGTGCTATGACAAGCAGGAAGTTCAGTCCTTACTGCTACACAGACAT----TTTACCAAGAACTCTGGAACAAAGCCACTTCCTCCATCCTTCTTAAGAAAA------GGAAAATCCTGGAAGTCAGCCCAGCAGTCACATTCTTGGGATGCTTAGGATCATGTTCATCTTTCCCCAAGA---CTGAGTGTCCAAGAAGGGAAGAGAAAGCCTGTCGGTTACTGTCACCTCTGCTTGTTCTCCGGGAGCCTGGGCCCTTTGAAGTGTTATCCTGCCAGGGTGCCCAGTGTCAGTTCATCCTTTTGGTAACACACATGCACACACCATTGCcacacaaatgcacacacatacatacacacatacacactcacgcatctatatgaatacacagacacacacacacacaGAAATGCACACATATAAGAACACA-CCATGAAGAGTTGTGATCCCTGCACCATTCACCCGCCTCTAAACAGCAAATTCACTGTATCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCTGGACGCAGCTATAAGTGAATGGCAAACCATCTCAC-CAGTCAATAACAGCACACAGGCAATGCAAATGAACCCTTTGGACAGGAAAGGGGAGCCTGGTCCTCAGCTAACATGGCAGACATACTGCAAGTCCAAAATAATCAACCCCCTGTGTCTCTTCTATGAAAAAGAA--GGGTTGCTTGTCTATTATCTACAGTTACTGTTTTAAAA-------TCATTTagggagagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaCCCAGATATATGAAGCTTTTGGTTTTTGAGTGGGACAGCACTGTTCACAGCTCCATGTGTGTATATCCAGTTCATTATTAAAAGTCATTTCTTACAGCATGGTTTATAATTTGCCACAAAATGATAACAAGGAGGCCAGGATGATAACAAGGAGGCTAAATTAATTGGAAGGGTCCTCCTGAGGTAGTACTGGTAA-TCTGTTAAGGCATTTGTTTTAAGAGAAACCCTCAGTAGAATTTATCAGTAAATTGCTTCATATATCTTCAGCATTAAATTATTCCCCCATTAAGAAAATTATAATTCTTTTTCTTCCCAGTAATGAAAGAAAAAATGAAACTATCTTCAAACTATTCCAGCTTGGCTGCCAGCCCTTATGTCTGTAATTTCTGGAATGCCCCCTCAGATGCTCTAATGAATACAGCTCAGGAAAAGGTGATTAAGAAAAGAGTGAGGAAAAGCAGAGATTAGAATTTCAAACAAATGCCATCATCAACTGAAGAAAACTCAAGTACGGCCAAAGAAGGAGAGGACCAATCCCTGGAGGAAGTTGATGGGGAGAGGGGAAGGAAGTCTGGTCTCTTATTGGCACTTTCTCAACTC--CGGTACCTTGGAGA-CTTAGTGTGTTCCCTCGATGGTAAACAAGGAGTGGGCAGTGATGATGGTCCTT---------------------------CTGCCCGGTT-----------GTCACCCTTGGGCACATGTGAGTCAGATTGACAGGTGGGAGATCTGCCC---TCCCGCTCAAGTGGAGAGGAAATCCTAGTGAGAACTCAGCTAT----------GTGGTCTAGCCACGAAACTTCTTACTGTGAGTCTTGTGT--TTTCTTTCTCTGTGAATAGAGAATGCACTGAGTCACCTATTTACCTAGACTTAAGCTGCAAACCCAACCAGCTGTTGTCTGGTATTCAATAATGG-TGGAAGAACCCTGCCTCAATGTCCTGGGACCAAAACCTACTCATGCTCCTCCCTAGTGCTTGGGGAATTAAGACAATGAGCATAACGGGTTTT----GTTTATGTGTATA--TAGGCTTGAATGGG-AGCGGTGGCCATCACATACTATGTTTTGAGGGTCTCTTTG
s HiC_scaffold_1 132309470 2779 + 233722169 AAAGACAATGTCCTTCAGGCTGTGTTCATTTCAAGCTCATTTGTGGAAGGCTATAAAACATAAGAATATGATATCCATTTTAGAATGTTAGCCATAGTTATATTGG---------------ATTGCCAGGCCTTGATGCCTGCTTTGTTTC---AGGCTCTCAGTAAA-CTCTTGATGGAtgataagtaaatgaatgaatgattttagATATCCAGCAGCAATAAAAAATACCTATGAGTTCTATA--GTGTCAATCGCAGCAGACTATAATTAGTTGCTTTTAATCTGGATTTAGTTTTGATATGATAG---------ATTCATATC--------ATAGATCAATTCAGAGCGAGCCAAC--TGTGCACTGAATATTCCTAAACACATCTCTAAATAGTTTCTATACACCTTCACTTCAGTATTTGAACTATTAGGGCTTAAATGGTTCTGTCAAACAACATAggccaaaacttttttttaaacataattacTGTAATACAAAGAAAGCATGAGTAAGAAGCCAGAGAATGGAACTGCCTTCCAGTCCTTTGGATGAGAAAATTCCCAGAAATGGTGAGAACTATCGGAAATGCCTGGTTGTTAATGCAACTAGCTATGCAGACTCTTTGTTGGCTAAAAACTGGAGAGTTCCCACTCTATC---------TGTGACAACTCTACTCTGGGGAGCCCAGCCAGTTCCTCCAAAGCAGCAGCTGTGTGACAGACCGTGAGGACTGGGTTATGG---CAAAGATGATCTCAGGCCAGCTC-CGCGGTGGCAACATGTCTTCTTCATTAAGGAACTGCCTGTG-TGAG---GTTGGCCTTTACTTTTAC--TGCCGGCACACCCTGCCTTGA-TATAGATTTTTCTCTCCGAAAGCCAGAACTAAG-CTGTCTTTGCATCTTTCTTCTTCACATATATCAC----------CATAGTGCCTGACTCAAAGAGGGCAGTGCAT----AAAGGGTTGTTGAATTGAACT-GACA--AATTCTATCCAATCCCAGTAATAATCACTTTAATCCTATTATATGGAGTGG---TATGATTCCTTTGGCAAAAGTTAGAAAAGATTCTTGAAATAATGACTTGAC----------TCCCCAAATCTACCCCCCA-ATCCTAGAAA-------ATTTATGTGGATTTTTCAGAGTTGAGTCTGAGGTCTTACAGGATACAGAGTAATCTGCTTTTAGGGAGAGGAATTTGTGTGACGTGT--GGAGGGTTTAGGTGCTTTCTGCTTTCCGTTCTGGCATGGTGTGCAGTGAGAGGCAGGAAGTACAGTCCCTGGGGTTAGAGGAATACTTTGTTTACACAGCGCGCGGGAACAAAACCACCTCCTCCAACTTTGTAAGGAAAAAATGTTGGAACATAGAACAAAACAGCCCAACAGTCACATTCCCGGGATATTTGAAATGATGCTCATCTTTTCACAAAGACTCTGTGCATCCGCAAAGGGAAAACAAACCCTGCGTCTTGGTCTTGCCATGGC--ATTCCCC--------------------------TCCCGCTGCGGGGCCC-GTG----------------------------------------------AGATGTAC---------------------------------------------------------CACAGAGAAGT-------TACAAAGCTACAGCCTTGCTGAG----GCTGTCTGCATGGT-------------GACGGC-------TTGCATCTTACATAC-------------------CGCACATATGTGTGCACCTCCTGAACCCAGCTCTAAATAAACAGCAAGCTGTTGTGCTCAGACcataaaaacatgtaaaaaagGAAAGCCATCACCct-gaca-gaaaaagaaacctgTTATTCATTCAAGATGGCAGAAGCTCTTT--GTTTGAAATAAACAGTTCA------ctttttcatggaaaaaaattgtatttcttgtTTATTATTTACAGTTATTGCTTTATAAATCCTTTTCATT---------------------------------------------------------------------AGAGAGAGACTAGGCTTAAAGCAGCTTTTATTC----------ACAGTTAAGTTGAC----TCATCACTCTAAGGCCTGTTCCTTACTAAAAGTCATTTcttttagcatatttta-aatttatctaaaAATGATGACCCTGGGGCCTTGA---------------TAAATTAATTGAAAAGCTTCT-CTAAAGTACCTTTGGTGGTTTTgttaagacatttatttttagagTAACTCTCAGTAGAATTTGTCAGTAAATTACATCATATATTCTTGGCATGAAATTATTTCACCATAAAGAATAGTAGAATTC-CTTTCCTCCTAGTAATGC---AAAAAGTAAAAGTGTCTTCAAACATTTCTGTGTTGAGCACTGGCCCTTACGTCAGGAATTTTAGGAGTACTCTCAtgggaaatt--ataaatataaggCTGAAATAGG-----AAGAGACATGGGATGGGGGGTGGAG----------CCAACAAAAACCAGAACTAG--AAAGGAAATCCAG------------------------AGTTTCCGG-----TCTGCTGGTGAA----------------------CACTGGCACTCTCTGAAGTAGGCACCACCTTGGAGATTTTAGTTTGTCTACTCACTGGTAAACAAGAAGTAGGTACTGGTAACAGTCCTTGAAAACACTTCCTCTGGAATGTACGACTTTCCATGTTTCAGCTTCAGAGTCACCACCGGATGTGC-TGAGTCAGGCGGGCAGGTGGGAGATTTGTCCAGACTTCATTCAGATGGAG--------CCAGTGAGG---CAGCCATCCCATGTCTCTTTCTATTTCCAAGCATCTTC-CATTTCAAGACCTATGTAATTCCTTTATCTGTGGATAAGGAGCGCAGTGAATGATCACGAAACCATGAATTAAGTGGGAAAACCAACTGGCAATTATCAGGTGCTTATGACTGATTGGGAGCACCTCACCTGAATA-CACAGGACCCTAAGCTTCCCACAGCTCTTCCAAGTACCTAGGAAGTTAAGTCAAGGGAAATAGTAGATTTTCTGGATTTTGGTTTATGGCTAGGTTTGATCAGGTGGCAGTGGCTGT-ACATACCATGTCTGAAGGACCTCTGTG

a score=22531
s chr3           145888624 837 + 160039680 TTGACTTTGATGTACATAGAAGATCAGATTGTATGTGCTTGTTCATGCTCACAGGCATCTCTTACTGACCATTCTGATGGCTGTAATGATCTGTCTTTCCTA-AGACCAGGGCAGCCTTGTTTTCTCAGCCAAGAATATTCTCAAACTTCCAGCCAGATTTCTGC-ACCTGGCTGTTTTATGCGCTGCTGGCATGTCTT--AGGAGCATAAGCCAGAATA-----CAGATACGTTTTAAGCC---TTAAAAACAGAGACAAATACAAACTTTAAGAGAACGAGAACA--CTCATAAGATCCCTGC---------TAGGTCAGGTTTCCTTCTTTTGGTTCTGAGTGACTAGAGGTGA------------CGTCAGGAGCCTGAGCTGCAAAGCAGTCTAAGGTGGTC-TTTACAGGTCTGTGTCCCACCCTACCGCCTTCCTCCCT---GTGAGTGTGGGAGCCTCCACTTCAGCCTGCTTTGTTTGTTTTTTAATAGATCATGCAACAGATGAGTGACCATCGTTATGACAAGCTCACTGTACCCGACGACATGGCCGCCAACTGCATATATCTAAATATCCCCAGCAAAGGGCATGTCTTGCTGCACCGAACCCCAGAAGAGTACCCAGAAAGCGCAAAGGTAAAAATA--------------CCATCTGTC-CTGCA-----GCGAGCCTCTCTGGGGACC-TTCTCATGATGGAATGGCAAAAAGGGACATCC--TTCTGCTGTACAAATCAAAACACTGACAGCAGAAAGGACTGCTGATAGCA-AGGGAACCATGAATTGACT---TTTTCTCTCTCATGCAGTTGGTCAGTCATTTGCACACAGTGACTGGG----ATGGTTCTGCCTGCTAGTTGGGGTTTCTCACACAAGAACTCCAA
s HiC_scaffold_1 132316958 891 + 233722169 TCAACCTGAATGGACAGAGAAGAGCAAATT-TGGGAGGTAGCTTATTTCTAAATCTGACTATTA---ACCGTCCTGATTACTGTAATAGTCCTTCTTTCTTATGGAAAAAGGAAACACTGCCTACTCAGCCAATGATAT---CAAAATCTCTGCTGGGCCTTTCCCATGTGGGCGTTTTGTGTCTTTCTGACAGGTCTTGTaataacaaaaaccagaaaaatagtCAGAAGCTTAAAAAACCattttagaaatagaaacaaacacacactttaaaagaacaacaaaaacctttTGCAATTCTTCCCCCAAACCATATATCTTAATTAGTTTTTCCTTTACCAAGTGGCTGAAGGAAATTGCAGGGAACTCACTAGGAACTTGACCAAAGGAATTGCCTTAAGGAATCATTTGCAAGCTTGCATCCTGCCACGctgtcttccttctttttgcaagtacaggagacactgctcagacttgcttttttt---ctttcgtAGATCATGCAACAGATGAGTGACCACCGCTATGACAAGCTCACTGTGCCTGATGACATGGCTGCAAACTGTATATATCTAAATATCCCTAGCAAAGGACATGTCTTGCTGCACCAAACCCCAGAAGAGTATCCAGAAAGcgcaaaggtaaaaaaaaaaaactcccccccccccccgccactgCACCTGGGTAGGCTTCCACGGGGATTATTTTTATGAC--AATGACAAATGgggtcttccttttcctctgtacACATT---gttcagaaagcagagagaa-tattaaaagcacagagaaagtttatttaactcagtttTCTCCTTCCTGGCATCTGTCATTAGTGCATTCACAGTAGGTGGGTGAAAAAATGATGCATAGTATTCAAAGCTTTTCAAATAAGTATTCCAA

a score=120953
s chr3           145890231 5608 + 160039680 [encoded data, 6273 characters]
s HiC_scaffold_1 132318401 5725 + 233722169 [encoded data, 6273 characters]

a score=32742
s chr3           145897081 1238 + 160039680 GCAACATGGAAACACGCTGAGGGAAGGGGCATGCAGAACAAACATTGAGTGGGGTCACGCAAGTGGATCTGTTTGGCTGACACT---GATAAGCAGAAGAGCACAGCAAGACCGTGCAAGCTGGAATGCCAAGAGCCCTGCATGCGGGGGTGAAGTTCTCAGACAGCA------TTTGTCAGTCTGTTAGGGTTCCCCAAGGACATTTGCTTTGAGCCATACCATGATAGTGAGGCTTGACCTGGCATCATTGTAAGGGGCGGCTGGAAACTGAAAAACATTGGCGTTTCTCTCT---GTTTGATTTCCCCAAGTTCCGTTCATTCTACTCACCTTCT-------GAGTGGAGCCTGACAGCCAGGCAATCAACTCTTCCTCTATTTGCCCCGCCCCCCCCCCAAAAAAATAAAAATAAAAAAGATTACTAACATCTGCCT-CTCAACTCCAAAGGGACATTTTCAGCACAAATGAGATAAAGGAGCTGGGAGAGTCTTTGGAAAGAAGGAATAATGTAAATATCATTAGCATCATCATTATCCTCATTAACTCCTATCACCGTATGCTTGGATCCTTTCAAAACATCAACTTCTATTTGAAACATCAATCAACCACTCCAGAAATAACTGGGGATTTTCATCACTGATTGCC---ACCGTGGCCTGGCAGCTTCCACCGTGAGTTTACAGGTGTCCTCGGCGTGTGATGGAGCTGCTCCATCCACCTA-TCCCGTTAGAAA--------AGTTGGAATGTTCCTATCTTC-TTCCCTCCCCAAACACTTATTTCTAGTGTAGTGGGAGCTGGGTTACTTTTAGCACATGGTATCTGGGGTTATC-GGCCGTTAGAGACCATTGAGCTGCCAAATATGCTACTGCCACTATAAATAAACACAGTAGACTCATGGGACCATGCCAGCGAGACACTCGGGAGAGCGCTGCCTGGGCTGACTTGTGACATGGCCTGCAGGCCATGGCATTGCT--AGGTGTTGGAAAGCCCC-TCTATTTATGCACAGAGGCTTCGGTTGCTTTATTTTGAGTGAGGACAAA--GCTTCAACGTGTTAAAATGGTGCCACAAAGGCAGTTCGCTTTTTCCCTAGCCCGGTCTTTTTTTTTTCTTAATTTGAGATAAAGTACATAAATG------TAAATGGCCTA---TTGAAACTTGGCATTTTGAAGTACATATAAATTATAAAATAATTGCAT--AATTA----------TAGTTGACATTTT-TGTGTGTA-GAATGTTAAAAAT---TGTTCATTTATTTCAAGATTTTAa
s HiC_scaffold_1 132324471 1211 + 233722169 GCATTATGGAAAGA-------GAACAGGGTGCACAGACCAGATAGCAGATGACA----GCAAGTGTATTTGTCCGGCTAAAACATGAGAGAAATAGAGGAGCATGGTGAGATCGTGTAGGTTGG-----------CCCTGCCTGCTAAGTTAGGTTCTTTGGACTATGAGGAGTTTTGACAGTCTGTCAGGGTCCACCAAAGACTTTTATGTCAGGAAATG--ATCTTGTTGGAGCTTGTTCTGGCAGAATTATGTAGGACAATTGGGAAGTAAGTAATAtt--------tctcttaagtttaatttctgtAAGTTTAATTTATTACACATCTCTTCTTGTCACAAATAAGAGTCTGAAATCCAAACAA------CTCTCTCTATTTGCTGTTCT--------------------AAAGAACAGATTAATCACACCTTCCTTCACAACTCTAAAGAGAGATTTTCAATGAAAATGAGGTAAAAGACCAGAAGGGTTCTTTGGAAGGAAGGTGTAAGGTAaatatcattatcatcatcattatcctCATTAACTTGTGTCACAGCACGCTTGAATCCCATCAGAATGTCAGCTTCTATTTGACACATCAGTCATCTGCTCCAGAAATAACTCGGGATCTTCATCA-TGGCTGCTTTGAAGCTGGCCTGACAGCTTCTGCAGTGATTTCACAGGTGTCCTTGGCTGCTGAGATGGCTGCCCCGTTAACATACTTGTATTAGGGAACCTGGTGAATTAGAATGTTCCTGTCTCAGTTCCCCATGTAGACACTCATTTCTAACTTAGTGAAAGCTGGCCCACTTATGGTACAAGATAACTGGGGTTATCAGAATTTTGGAGAACATTTAA-GACCAAATATGTTACTGTCACTATAAATAAA------AGATTCAAGCAAGTATGGCAGC-AACCACTTGATATAACATAGCATGGA-TGGCTTGTGACATGA-----AAGCAAGGACGAGGCTCGAGATGATGGGATGCCCCTTCTATTTATAAACAGAAAGCTTCATCGCTTTGCTATGAATACAGAGAAAAGGCTTGGGTGTATTTACATAGACCTAAAAAAGGCGTTTAGTTT------------GCTTTTTCTTCATGCTAACTTGAGGT-------ATAAATGACACATTAAATGATATAGGTGTGCAAATTGGTATTTTGATGTACAGATACACTGTGAAACAATCATATTCAACTAACATATCCATCACCTAATAgttcatgtgtgtatgtatgtcaAGAATAAGCGCTTTCTTCTTTGcaaatttcaa

a score=40293
s chr3           145898754 2968 + 160039680 GGCTGATGTTAGTTTTGACCCTATGgctatatattaagcctctagaactcaatcatcacatgtatctg-aactttgtacctcttaacccacatcCTCAACTGGTCCATTAACCATTTCTCTTGAAACATAAAGTTA---TGTA----CCTCTACATGGACAAAGAAGCTTATTGATTGAAATTTGATAAACCCTAAGAGGCAAGTTCCCCCCAAATACAATCAGAATACTACATGCTAGGTGTTGAAACACCCTGTATCCCAGCAAAGTACAATAACTGCTTATTCTACATGGATTCCACAGAAAAGCTCTGACAGCAAACAAGTTCT-ATTCCAAGCAAGAGCTCAGCTCTGTAGAAATGTTAGTTTTATTACTTCTGGAAGGAACTTGTGGAACAAACACTGATTCACGCACCCAACAGAGGCTCAAAATTCCAGGACAGGATGTGAACAAAGTCATCTATTTTGTTGACTGGGGACCCAGATGAGTGTGTGAAGTTCCCTAGGACTAATACTAGGAGAGAAACACCAGGCCCCCCCCTCTCTCTCTCGTGTTTTCTTTCAGCCTAAAAAATAATG----GGAAGACAGAA-----GCTGTTAC-CAGGGCTAGATGGCAATGGGagccgagtgccatctctcccacttgtaaccccagcacccaggaactgggggcagaagat----caccatgagtcccaggccagcctgggcatcac---------aattagagccc--gtctcttaaataaattaaTTTAAAAGTTAATGATAAACAGGGTAAAACTTTAGAGAGGATTCCAGCAGGAAACAGAATTCACTGACACTTGG--------AAGAGAGCAGAGCCAACAGCTCATTCAGAGGCCTCAATGCTAAACCTCCATGCAGGGGCTGAGTGAGACGCCGCAAACCCAGCCGTCA-CAACACTCCTTGGCTCACCGGGGCTAGGATGGCAGATTGTGCCTCTAAGACTAAGACAAGAAGGT---GCGTCTGGAACTTGCCAGAG--CAGGCCCCAAGCTGAGAAGACACACATCAG----TCCCTTTCTTGTTTCGCTCTGATCTGCTGCTGACCCG--TTGGCTTGGAGATGCTTCTGATGGGGCCCAGGTGAGG-ATTCA--CAAGGTCAGCGTCCCCCAACAAGGAGCTGGC--TGAGATACCCAGGAGGGAGCTGGAGAGGTCAGAGTATATCTGCACAGAGCCCGTGGTGAAGAGTTACAGCAGGTCAG-AGAGGGGTGGGGGTGGGGTGGCG----------CAATGCCAGTGCTGTCTCACAGAGCTGGCATTTAAATC-CTAATTCCTGGCACATTTCTGAGCTGGAGGCATGTGC------TGTGGCCAGGCTCTCCTTCACTCAGTATCAGAAAATTATTGGATCCAAATCAGCCGCAG---------GCGGCCTCGGAGTGAAAGATCATCACGTCCCAGACCTGCCGGTCCAGGCCCTCTTTAATAGACACTGTGTTGATTCTAAACTTAGACACACCATGTGAGCACTTGGTCCC---AAACATCAAGTTGCCATTTTGCAGC--TGTTCCCGGGACTTTCTGGTCACACAATGTTGTTTAAAATTCTG-----------------ACCTTCTGTGTTG-----ACATCTAGCCC--------------TAGATGTTTGCATTTTATTTGGTCATATTGCTCACGGGGATAATAGTTTAAGATCAGTGAGGTTCCTATCGTTGGGGTGTTC----------ATGGACCATGAGCAAGAGTGGTGTGGTGGCAGAGAGACTGTTCCAGCCAGCAACCCTGGGAACGGACAGCATGGACAGCAGGGTAGGTAAGGTGTTCCTTTACCACCCAAGAGTCTACAATTAGG-CTCCGGGT---------------GGCTTTCCATTCCACTCTATCACCTCGGACTCACAGTCAGACACACACGGTCTTCATGTAGCAGATGACAATACTGAGGCCTCCACACTCAGTTT-GCATTATAAG----------AATCTGCTTCTGATGGGGAAATGGTGAGAACTGCTTCCAAAGAGGACACCACACTTGAGTCACTCATCGTGGTCATGGATTGGATACAGCATGTGTTCCTTCAGCTCTACAGG-GCTTGCCTAGT--GTGTTCAGCCCTGGGTTTGACCTTCAGTgaagaaaggaggggatggagggaaggaagaagagagggaagagagagggcaggaaagggaaaaaggaaggaaggaagaaaggaagggagggagggaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggcaggCAAGCAGGCAGGCTAATTCGGTGAGGTCTGTAGGCAAGtgtggtatttgaaccaacaccacacccttccccccccactctcagttcatgcgacagaaccccagtgccacatgacagagtaaggaa--cagggctctcttgggacctcacagctccccaggtgaggtttgccttccagaggaagggcaggacatgagtgtccctcacgctggccc-agcacatctgatgctgag----------gggtgagtgtgctccaaagatgagggtccacgcaaccccttctg----tgggacggaggctGCT---CTTTGAGAGGACGGCTCCTGTAAGAGAACTGACACATCCCTGAGTGACCCTCCCTG--CTGGCAAGCTAAAGATCCTTGAGTCTACGGATGGATGCCCTTAGTCCTCAGCAACCAAGCAAAAGTG--------TCAGAGAAAAATGGACAGTTCTTCCTGGCCCACCCCATCCAGAGAGATGCCTCCGACATGTTGTCTAGCAGGAGAATCAGGAG----AGGAAAGAACTGGAGTC-TTTTCTACAG----------------------------AACAATTGAGTT------------------------CATTTGCAG-----------------Tgaagtgaacaagacc--aaagccatctctgcctgccgatcatatagtcccgatcctcaaaaccctcaggggcttatgaaaaagaatcaaaacaagccattgagctcagcatttcaggatgccaaatcaacatttaaataagtcattggtatttctctgcatttaggatggaca----aacacactcttaggagaacaattccatttgaaat-----------gaatcgaatatg--taaatcaactaataaa
s HiC_scaffold_1 132325692 2979 + 233722169 GACTTTTGTTTACTATAACTGTATGGCCATACATTAGATCTCCAGAACTTACTCATCTTACCTACCTGTAACTTTGTACCTCTTGACCAACATCTTC--------------CCATTTCCTC----ATCTAAAACTAATCTGCAAGACCCTGTTTGTAGACAAGGAAGCTTATTAGTAGAGA--------------AGAATTCAGGACAATTCAAAATTAAACTGGATACTATGTGGTATATGTTGAAATTTCCCTCACCCCATAAAGTTATAATAACTGCTTATTTCATATGAATGT----GAAAAGTTCAAGAACCAAACAAGTTCTGATTCCAAGCAACAGTTCATCTTTGTAGAAATGTTAGTTTTTCTACTGCTGGAAGGAGCTTGTGGAATAAACACTGATTCATGCATCCAGCAGAGGCTTAAAATTCTAGGGCAGGATGTGAACAAAGTCATCTATTTTGTTTACAGGCGACAGAGATGAGTGTATGAGAGCGCCTGGAGTTAACACTAGGACAGAATCACAaggaattcc---------------ttttttttaagtttgataaTTATTGGAGTGGGGGACAGAAGAAATGTTGTTATGAAGGGCAAAATGGTAACAAG----GAGT----------CCACTAAGAAAT----------AGAATTCAGGGCCaaggattgagctcagtggttcaagcgcttgcctggtaagcacgaggtcatgagttcaatccctggtaccaaaaataaataaataaataaaatatt-----------tagttctttaaaaaaa-----gaaaagaaatagaatttgtTGCCACTTGGTTCAAACAAAGAGATTTTAATGGA-GGTCGGCTCAGAGGTATTAAGCATAATGATACAAACAACGAGTGAACAGGACACCCAGAAACCAATAGTAAGCAGTACTCAGGCCCCCAACAGGTCAAAAATAGGGAATTGTGTTACCAGACCTGAGATAGAAAATTCAGGACTCTGTCACGAGTTAGAGACCAGTTTCCACACAGAGCGGAAGTACCTCAGCCTTTCTCCTCCTCATTTTCCTACTCTCT-CCATTGACCGAACACAACTGCAAGATGCTATTGAGAAGACCTGCATGGTGCCTTCAGTGGGGGTCAGCCTCTTAGGGCAAAAAGTTGGCCACAAAGGGCAGAGGATGCATCTTGAGAAGCCAGAAGATGTCTGCACA-AGGCTGTTTTGAA-ATCTGCATAATGCCAGTATAAAAATGAGTTTAGTCTATCAAATAAAAGGCCATCATCAATACGAGGTCAAAATGTTGGCATTTAAATCATTAATTCTTGGCAAGTT------CTTCAGGCATGTGCCAGTTACATGGTCTGGTCCTTCCTCCCTCCACATCAAAAAATGATTGGAACAGAATTAACAACAGAAAGTGTGCATTGCCTGAGGGTGAAAGATCATTGCATTCCAGACCCACAAGTCCTGGACCTCTTTACTAAGCACTATGCTAATTCTAAAATTAGACCAGTCTCTTGGACACCTGGCGTCCAAAAACAGTGAGTTGCTTTTTTTTTGCAGTGTACCCATGACCTTCTGGTGACATAAACTTGCTTTGGATGCTGGAGAATCTATTTTCTCTGATTCCTGTTTTGTTTGTACATCTAGCCCACCTAGCCAAGGATAAGGCATTTTGCTTTTATGTGATTATGTTGCTCATGGTGATACTAGTC---AATC-------CTCCTTCTCTGAGGATGTTCAAGAAGACTGAAGGACCATGTATAAGAGCAGTTC-----TAGAGAGATTGGTTTATCCAGTGACATTTGATGCAGGTAACATCAGTATCAGGGTA---------TTCATTAGCATCCTGTTAGTCTACAGTTTGGTCTCCATGCTGTTCTGATTCCTAGGACTTTCCTTTCCCCTCTACTACCCTGATCTCCCAAAAAGAGGCACATTGTTCTCATCTAACAAATGATAGTAAAAGGTGTTCTCCTTCTAGCCCAGCACCATGAAGAGCTCCATTGATCCATTCCTGA-GTAAGTGTGGTAAAAATCATTcgtaaaaaaca---aacatttagg-----------ggctggggatt-----tagc----------tcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccagtaccgataaaa----------------------------------------atgaaaaagacaaaataaataaataaataaacatttaaagtcTCTGGAAATGATTGTA--------------AATATATACGGCAAATGAAGAAGCACTTATTTAAGAATATCTA--------------TAACTTAGTAAGATGAACGACAGTTTGTGGTATTGGAACCATACCCACA--CTTCCTCTTCATTCCCCAAAAAATGAGGATAAAATCCCCTCCAGCCTGGAGGAGCTAAGAATGCAAGACTTTCTC----TCCCTCAGACCCCC-----AACCCTATCTTCCCAAGAAAGGGCAGGATGGCAGCATTGCTTATCCTGTCCCTTGACCATCTGATGGTGAGACTTGGTCTTGGGCAAGTATGACCAGGAGACAGGGACCCCTTTCTACCTTTTAGCACCTGGCATGGGGGAAGCTCTACTCTGAGAGCATGGCACTGCTAAGAAAATGG----GGCTCTGAA----CTTATGTGCTCTGGAAAGCCCAAAAGACCTAGGTCTAC---------CACTT--TCCCTA-----CACCTAAAACTGGTTTTCTCTCAGAAAGAAATGGACCACCCTCTCTGCTACA--------ATTGTGATGGCTCAAAGATTTTGTGCAGGAGAGGAGCCCTAAATCCCCCCAAAGAACTGGGTTCATTTGCAACAGAGTATGCAATTCAAGTCTAAAGGTCAAAAACAATGGAGACAAGGGTAAAAGGCAAATGAAAGGGCATTGGTAGACTCTTTAGATATAAATTGTAGGTATCCTGATCAGAAAGGAATCTCTATTTGCTGATGCCATTATCTTTATATGACAAATTCTAAGGAATTtagtaaaa--aacagaaataa-----tgagaTC-----TGTAAGGTATCAgatcaatatttaaataaatcaat-gTATTTCTAAACAGCTATAATGAATAATCCAACATAACATTaacaaaacaattccatttaaaatagcatcaaaaagaataaaataggaataaatttattaaaaga

a score=13028
s chr3           145903587 315 + 160039680 CTCCGTCCCTCGCATACCTCAAAGGGTA--TGAGGGCATGAAATAAGAGGAATTATACCTAAGTGTTTGGTACCCAGCGTGCCGCTGCTCAA-CGCAACCTCTTATTTATTGAATGGGATTAATCAGCTTCTCACCAGCACCTGCCACTACACAGCGCAGAAACCGCCATTCCTGAAACTACCCTACCCTCCAATTAGAATTCTTTCTCTTTTGTGGTTAAAATGCATTGACAGAGTCCAACCCTGAAAATAGGACTTTGTGAATGATTGCTTGTGGAATGCCTCTTAGCATTGCAGTCCTTGAGagaaaggaagaaa
s HiC_scaffold_1 132330172 313 + 233722169 CTTTGTCCTCTACATATTTCAAAGGGTGGTTGGAAATATCAAACAAGAGAGTTTATATAAAAGTAGTTGGTACTCTAAGCACTGCTATACAAATATAACCCATTATTTATTGAATAGGATTAATCAGCTTTTCATCAGCACCTGTCACTACAAAACTCAGAAGCTGCCGTTCCTGAAACTACCTT-CGCTCTAATTACAGTTCCTTTTCTTCAGAGGGTGAACCACTCTGACAGAACCCAGCTCTAGAAATAGTGC--TGCGAA--ACTGCCCGTGGAATGTTTCTTCCTATCACAgccttttaaaaacagagaataa

a score=50315
s chr3           145910011 2443 + 160039680 CAATTCTGCTATGAACCAGACCTAACCAAGGACC-TTTTTTTTTCTCA--GTCTTTTCAGGACCATTATC--------ATCAGTGTTCTTCAAGG---ATACCTGGTCGACCTGCTTTCTGTTGCATTCAGAA-AAGTAAAAT-CCTCTCTTCAGAGCCCTTTCTGG------------------------------CATTCACTCCTCCCGGCCCTGCA-TCAACCCTTACCCTTACCC-----------CCAATCCTCCTCAAACTGAGGAGGCTGAGGGCAAAGAGGGAGCAGGGCCTTGATTCTGACATTTCCTTTAAA-CAATATAAAGGATGCAACCTGTTC--TCCTTTGGCTTcacacacacacacacagacacacacacagacacacacacagacacacacacacacacacacacacacacacgcatgcacTGTTGGAGGCGTCCATATTTTTGGACTTCAAAGTCATTAAAGGTCACATAGCC---CAACAACAATAAGTGGAAAACCTAAGCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTAAAAGCCTGTTTCATTTGGATGAGTCATGCTTTTAAGCCAATACACAGTTTAGCTGTAAACCTTTGATCAGTTACATAAACACCAAGGGCTTCACTCTATGCTTGTGTG-----------TTTGCCTTGACCTGTGAGAATTTCCTTCGTGGGCTACACATTCCCAGGGAAGACTGCCAGAGCCTCCTTTAACCCCAGGCCATCTTTTGACC---GAG--------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-----TAGCATCTTGGGCCTTCAAAGAAAAGTCATCTTTCCTGTTTCTGTGTCCTGGCAACTTAAGTGGACTCCAGCTCATCCC------CCTAGCTGGCAC--------------AGTCTTTACTGCAC--------TGACCACT----GAAGCCTCCCATACTATGGAATTCTTTAGGCTACCCAAGGCAGAAAGGATTGAGCTGGAAGTAGGGGGGCCG-----------TTTTGATTCTTTAGATCTGC-GCCCTCTCCTCTGAAGATGCAGCTATTAGACAGGTGCTTAGAAGACTCCTGAGAGTAGTCTGTGCTCCCCTTGTCCTT---GCAACATTGTTTATTTTCTCCCAGGAAGTGCATACCCTCCATTTTCTAACTACTCGCTTCTCT---TTCTCCTTCACCTGTCCTCCGATCTCAGGCAGGCAACAACTCTCTTCTGTTCTTTGGATTGGTTCCATCTGGCTCCTAACTGCTA-CAGA-ATTTAGTTCATATTTGAGGTAA----GCAGGTGGAGGATAGCCC-----CAGAATCCTGGAGTATATTCTCGAATGCTAGC-CCCCTCTCTAGAAAGCTGCTCCTGCACACTTCCGGCTGTTTCCTCCCTCTCTCTCCCCTTCTCATCCCCACTTCCCTTCAGTATCACCCACTCACAATGCCACTTCTGGGCATCCTTTCTGAGGT-GTAACCACCCAGGCAAATGTGGACGTGTACGAA----------------GTCGCTGTCTCCGTGTCCCAGTCTTCTTGGTCTGATCAGCTTTAGCTGGTT-----ATGGTCTGGCT---CCCTCCAGTGTTACATAGATCTCA---TGAGAACC---TTATCCTCAGGATCGTAAGAG-------GCCTTAGC-----AAGTGGGAG-----------------------------------------------TACCTGACCAGTATACATTTAATAAATGGAGAAGTGAGAA-GGAAGACAGTCTCACCTGACCTTTTTACACTGCTCCATTGATACTCTGAA--GTCAAACC---------------------------------------TCCTTT-------------------CTTTCAACACTCAAAGAAAGACTCAAAGG-------AATGTGGGGACCTGAGAGGGGGACCTTCCTAGAAGTGGTCCCAGCCTT----------------------------------------------------------------GTCACCTGTGTTAAGTAGAGGACAGGCA---TTTCTGATGGGACAATGAGAAGCACACTTTTCA--GATGCCCACGGATGTGCCAGCAGACATG-GGGTTTTCTCTGGACATTCCATCA-GGCACTTGTGAACAGG----GCAAAAAGGACTC-----TCTAGGAAGGACTGGTCACATTACTTGGGTGTGATA----GTGCAGAATTCAGAGAAGGTGGATATTTGGCTGAG-ACCACTCAAGAAGACAGTGACCATCTTTGTTTTGCTGGACAGATGGTAGGCAGTTCACGCTCTGATAGTCGAGAAGC---TTATTGTCATTTGATTTCAAATGT----------GGCTCTTCCATTCCCTGTCATTAACCCATTGTCACCTAGCGCCAGGATTTTAAACTATAAGGGGCCACACTCTGAAATATTTGAAGGGTCACTACAGTCATCAAACACCTATTTCTGGTGTTAGTGAAGCTAAGGCAGAGACTACAGGTCAATGACAGAGAACTGTTGAATGCCTCTATAAGCCTAGAGAAGCCAAATGCTGCAGGAATCCTGTCCACGGCC-----CCCACCTTCCTCAATCACCGGTTTCACGGGCTGAGAAAACAACATGGGGAACGCACCTATCTGAGTCCAAAGATTTTTAACGGAACAAGACCAAATCTATCCTTA----------AACACTTTGT------GTGGGT---CACAAAGGCAGCTCACATGACCTCTGCCTGTCTC--AGTGACTGAGTCAGAACT
s HiC_scaffold_1 132338334 2712 + 233722169 CAATGCCACCACAGACCAGTCTTAACCAAGAACCATTCTTTTCTCTCAATGTCTTCTTGAAACCAGTGTTTATAGAGTGACGGTGTTCTTCAAGAGAAATATTTGGTCATCCTCTAATCTAT-GCGGACAGAGTGACTAAAACATCTCTCTTCCATGCCCTTTCTGGTATTCACCACAAATTGAAGTTGTGTTCTGGCATTCACACCTCCCA-CACAGCAGTCACTTCTTCCGTTTACCTAACACTGAACACCTACTCACTACCAGCTGCAGAGG-----GGCATGCAGGGGACAGCGGCTTGTGGTGAGCATTTCCTTTAAAACGGTTTTAAGGATACAACACAGTCCATCCTCTGTTCTTATATGAACA----------------------------------------------------------------TGATCTACAGGTAACTTCCATAGTTTTGGGCTTCAGGGTCACTGAGTATCACATGGCTTCACAACAACCGTAAATGGAAAACCTAA----------------------------------------TGATTGTGTGTTTTTAAGTCTGTTCCATTTACGTGAGTCATACCATTAAGTCAATACACAGTTTCATTTTAAACCTTTAATCGGTTACATAAAGACCAAAAGGTTCACTCTGAACTTGTGTGATATTAAAGCTTTTTCCTTGTATTGTAAAACTTTCGTTCTTGGATTACACATTATCAGGGAAGACTGCCAACTCCTCCTTAGCTTACAGTCTATCAGTCGATCTGCGagcaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggcaGTATCCTGGTCCTGCAAAGAAAAGTCACCTTTCCTGTTTTTGCA-----GCAACTTGAATCAATTCCAGTTTTCCACTGCTTACCTTGGTAGTATTTGGTTACCTTGGTAGTGTTTGGTGTGCACGCGTCCTGAGCTCTTCAGGACGCTTCCCACTCCACAGAACTTTTGAAGGCACCCAAGGT-----GCATTACACtgggtggggcagggcagggaacAGAACCTTCTGAGTCTTCAGagacccagccccttcctgtgaggaCCCAGCTGCTGGGTAGGTGTTCAAGGGAA-CCTGGCTGTAGTCTGAGCTCCCATCGTCTTTCCGGTGACACCTGATTCTTCCTGCTGCGAAGCATGCACCATCAGTATTTTAATGACTtgcttctctgtcttcctcctcccctgTCAGTGAATCTTTCCCAGGCCAAAACACCCTGCTGTTCTTTTGATC--TCTCAACTAACTCTTGACTTCTAACAGGTGTTCGGttaatatttgaggaaaaatagaagaaagaggtCAGGCAGGAAGCAGGTTCCAGGA-----TCCCTGAAGAGCAGCACCTCTCTCTAGAGAGCTCGGCCGGCAC-TTTCCCATGGCTGCTCCTCTCTCTTGCTCCTTC-------CATGTCCATTCATCATCATCCAGGCAGAACACCCATTCCTGGCACACTTCCTAAAGAAGCCACCACACAGGCACAcgcgtgtgtacacacacacacacacagagtcattcTCTGTCTCACTTTCCTTATCTTCACAATctgatattttttgtctttttgagacagggtctcactatgcaactcaggctgaccttgagtttactttgtaacccaggttggtctccaactAGCAATAGTCCTCTAGCCTCAGCCGcccgaatgctaggattacaaccTACACCACTACGTCCAGCTTTTCAGGACTTTAAATGATACCTAGTAAGCATTAATTGAGTGAATAAAGGAACGAGAAAGGAGGGAAGTCTCACCCTTGCATTTTTCCCTACT----TAATACTTTAGAATGTAGAACCCTGGCATCCttcacagagaaaaaggaacctgTTCTTCTGTCCTTTGCTAATGTGTCTGCTTGGCCCTTTAACATGCACTGCA-GAGTCAGAGACACCATCAGTGGGAGAACTGAAGAGGGAAGTAT-----GAAATGCCTCCAGCCATTTATCCTTCAAGATGCAAGAGCACAAGGAAGGTGGTGACCGGGACGTGTAGCTCCCTAACGACAGCTGCCTGTGACTGGTGAAGGACAGACAGAGCTTCTGATAGGATGATG-GCAACACATTTTGCACAGATGCCTACAAGCATGCAAGCAGAGACACAAACTCACTTAGGA---TCCATCACTGCATCTGTGAACAGGTGGCACAGTGAGACCTCAGGGGCCCAGGGGCAAAGGGTCACATTGTTTGGGCGTGGCAACTGGTGCAAGATTCAGAGAAGG-GGATATGCGGCTGGGGATCACCCTAAAAGACATTAAGTATCTTCTTCTTAGTCAACAGATGGTCTGC--TCCAGGCCCTGATATCTGAGAAGCAGTTTATTGTCATTTCCTTTCATGTGTCCAGATGTTTACCATTTGTCTTTTCTGTTGTTAACCCACAATCATTTAGTACTGAAAGCATTAAATATAAGAGGCtgtcttttgaaatatttgccaGGTCACCAAGGGCATTAAACACTTGTTTCCAGTGTTAGTGAAACGAAAGCAGGGTTCATAGGTCAATGACAGAGAAATATGTAATGCCTAAATTGACTGAAGGAAGCCAAATGCTACAGAAATC----CCACGGGCACCTTTCCACCTTCCTCTTTCATCAGTTTCACTGCCTGAAAAAACAATTCTGGAA-------TGCTTAAGTCCAACCA-TTTCAACAAAACAAGATCGAATATACTCTGAAGGTGTACACAACACATCTCTCCATAATGAGTAACTACGAGGCCAGTTCACACTCGCACACCCTCTCCCCTGATGACTGAGTGAGAACT

a score=22047
s chr3           145916332 955 + 160039680 TTCCTCTAGGAACTGTAGGTGCTTAAAGCAAACAGCAGATTCTATGAGGCTGGCAGTGGTTGACAGTGTGAAACTAATATTGACAGCAACC-------------AAGGTTGACTTGGGACTTTT-GGAGTTAGTACCCAG-----------CATGTCAAGTGAGCTCTCTGC-------------------AAATATACCCTCACATTCATCAGCTTGGCATGGCCAAAAGCAAACAAGGTACCCAACCACTTGATCAGAAGCGAAAGCTCGACACCAGTGCCATAGCAACAGTGGGTTTTGTTTCCTGCTCTGCGGGCCAGCCAGT---GGTGTGAGTACTGGCCAGAAGGAACTGGCACAAACAGAGAGGGTAGGATGGAGGTATGGCTTGCTCGAAGCAGCACAGTATAGAGAGTAAAAACCGCAAGAGAGGGAAGCCAAGGTTATCATCA------AAATGTGGCTGAGAAACACAAGATCTGAAAGTTTTGTTAATAATGATAGTAAGTCTCAAAAA------------ATAATGACAGCAGCAATAGATGGCATCTGCTTGTAGGACTCCTGCAAGGCACTAGCTCCCAAATGTCTTTCACCTCTACTGACCTCTGAGACAAGGTTACAATGTTTCTTTCTGTTGAAAGGTTACTGTTTCCCACTGTTC-------TGTGTTTAGTCTTTGCTTACTAGAGCGTTGTTTGCTGAGTGgatgaggtacctggg-cacagagcagtta-tgtaacttgcctgagcttgatacagtaagtggtaaaggaatgagtcaagacagAAGAAAGCAAAGCTGGAAACCAGAAAATGAGGTTTGAGTCAGAAACCACAGAGAGGGA------------------GGCGAGGGATAGGTCGGTACAAGTGTGTTAGAAGACCAGAAGAACTTCAGAAGGCTGAAATTCTCTACAGCT-CTTCCTGAAGTCTCACAGAAGTGATAACGGCAGCCAAGAATAGCCATGTGAGTACGGGGAAAGCGGGTTGCCATGAAGGGACCAAGCATGCCT
s HiC_scaffold_1 132345563 983 + 233722169 TTCCTTTAGGAACTACCTGCAGTTGAAATAAACAGCAGGTTCTAAGAAACAGA---TGGTTGATAGAGCTCAGGTAATTTTGACAGAAACCTTGATAATTACATGTGGTTGGTTTGGCATTTTTTAGAACTGG--CCCAAGCAATTTAAGTCATGTGAAGTGAGCTTGCTACCTGGAAGCTGAAGAACTACAGATTAATCCTTATATTC-------TGACATGGCTAAAAGCATAGTAGGTGCATAATTGCCCAATCAGACATTGAA--TTACTACTATTGC-----------TGAGTTTTGCTTC-TGCTCTG-AAGCAAGTCGATAAAGATGTAGGCACTG-CCCTAGGGAACTGGTCTTAGGAAAGTGGGTTGG---GAGGTG-GGATTCCTCAAAGCAGCACAGTTGAGGGA--AGAAACTGTATTGTGGGTAAGGAATGAGTGTCACCATCAAGAAAATCAGACTGACAAGCATCAGATCTGAAAGATGAGTTAATAACGATAGTGAGTTTCAAGAGCAGTGAAATACTGTAATGACAGTTGCTA---ACATCTACTGCCTGCATGGGATATGCAAGGAACTA-------AGGACCTTCCA--TCAATCAAGCT----GACGattttgc--tgtttctacttcttgAAATGTTAGTGTCTCCCAGTATTCACCCTTATTCCTCTTCTCTTCACTTCTCTGAGCTTT-TTCCTTGAGTAAATGAGGAACCTGGGGCTGAGAGTTGTTAGTGTAACTTGCCTGAGCCTGAGA-AGTAAGTGGTAAAGGGATGACTCAAGCCGGAGTAAA-TGAGGCTAGAAACCAGAAAATGAAGTGTGAGTCAGAAAGCGCAAAGATGGAGGTCAGGATAGAGAACAGGGCAAGGGATGTGTTAGTACAAGTGGATGGG-------GAAGAGCTACAGAACGCAGGGTTTTCCCTCGTCTGCTTCCTTGTGTGTCATGGGAGTAAAAACAGCAGCTGAGCGCGTGCAGGTA---ATGGGGAAGGCAGGCTGCTGAACAGGAGTTAAGAAGGGCT

a score=38833
s chr3           145923432 4200 + 160039680 [encoded data, 4731 characters]
s HiC_scaffold_1 132354514 4145 + 233722169 [encoded data, 4731 characters]

a score=64078
s chr3           145929460 4917 + 160039680 [encoded data, 5200 characters]
s HiC_scaffold_1 132361175 4373 + 233722169 [encoded data, 5200 characters]

a score=64131
s chr3           145937933 1172 + 160039680 GAGTAGGAGCGCGGCTCCGCCGCTAGGGGGCGCAAA---TGGATAACTCGCCAGCCTGGGGGGCGGGATCAGCCGTGGC-------TTCCGGCTTCCGGCTTCCGGCCGAGAG-AGGGTGGGAACCCGCGGCCGTCATGGCAGCCGAAGAGAAGGACCCGTTGAGCTACTTCGCGGCTTACGGGAGCAGCAGCTCCGACTCGTCGGATGAG------AACAGCGAGCCGGAAGACGCGGGTCGCAAGGAGGCGGCCTCGGCTCCGACGACGGGCGGCCGCGGGAAGCAGGCGGAGAAGCGGCTGCCCGGCCCGGACGAGCTGTTCCGCAGCGTGACCCGCCCGGCCTTCCTCTACAACCCGCTCAACAAGCAGATCGACTGGGAGCGGCATGTGGTGAAAGCGCCGGAGGAGGTGAGATCcccggccccgcggccgccccggggcccgacgcccgcttgcccctccgcccgctc-gcccacccccggctcgcactcag-----cccgcg----ccgcgccgcgcgt-ccCCACGGCCCCGGGAGCCCGG-------------GGGGTGTCAGCCCGGGCCCGCCCCTCCGCGCTCGGGGGTCCCAGCC-GGGCGACGACTAACGGTGGTGACTCCCC-GCCCCCCGCTGCAGCTTCTCCCCGAGACCCCTTCCCTTTGACGCCGAAGTGCCTGCGCTGCTGCCTCCAAGACAGCGTCTCTGCTGCAGCCTCCT---GAAGGGGTCAGCCTGGCCGTAGTATCTGGGACTGCATCCTCCTTTGGTAACTAAAAGTTATTAGCTTTATTTATCCAGGGAACCCTTTGACTTTTTCACCTAACAGTGTTGTGATGTTGATGGAAAAAAAAAAGTGTCTTTTAAGCCTAAAGGATTTTAAAAAAGAAAGAAAGAGGAAAGTCAGCCAGAATGATGAGCAGGGAGGTGCATGCGCTCGTATCCATCGCGGGAACCTCGGTTCGTCACAGGGTTTCTTAATGTGCTTACTCGACAGCCTCCAAAGGAGTTCAAGATCTGGAAGTCCAACTGCGTGCCGCCCCCAGAGACCTACACTACTGAGAAGAAGCCGCCGCCGCCAGAGCTGGACATGGCGATCAAATGGTCGAATATCTATGAAGACAATGGAGACGATGCCCCACAGAACGCCAAGAAAGCCAGGCTTCTGCCTGAAGGGGAGGAGACAGTGGAATCAGGTAAGAGAG
s HiC_scaffold_1 132373405 1195 + 233722169 GAGTAGGAGCATAGCGGCGCCGCCAGGGGGCGCAAGGCGCAAATTGTTTGCAGAATTTGGGGGGGGGCAGAGGCGGGGCAGGGCCTGGGCGACTTCCGACTTCCGGCGGAGGCCAGAGTCGTCGCGCGTCGCCGTCATGGCAGCGGAAGAGAAGGATCCGCTGAGCTATTTCGCCGCTTACGGGAGCAGCAGCTCAGACTCCTCGGGCGAGGAGGATAACAGCGAGCAGGAAGAGACGAACCGCAAGGCCCCAGAGCCGTCGAAGTCGTCGGGCGGCTGTGGAAACAAGGCGGAGAAGCGGCTGCCGGGACCCGACGAGCTGTTCCGGAGCGTGACCCGCCCAGCTTTTCTCTACAACCCGCTCAACAAGCAGATCGACTGGGAGAGACACGTCGTCAAGGCGCCCGAAGAGGTGAGG-CCCCGGCCTTGT-----TCCCTGGTCTCGGCCCTGGCCTCCGCCCCTCCCTGCCAAGCCCGTCCCC--CCCACACGCAGTCACCCCCGCGGGTTCCGCGCCGCCCCCGCCCCGCAGCCCCGGGAGCCCGGCCCCCTCCCAGCCTGGGTGTCACGCCCGACCCAAACCTCCGCGCTCGGTGCCCTCACCCCGGGCGAGGACTAACGGTGGTGACTCCCCCGCCCCCCGCTGCAGCTTCTCCCCGAGACCCCTTCCCTTTGACGCCGAAGTACCTGCGATGCTGCCTCCAAGACAGTGTCT--GCTGCAGCCTCCGAAGGAAGGGGTCAGCCTTGGCGTAGTGTCTGAGACTGGATTCTTCTTTGGTAACTAAATGTTATTAGCTTTATTCGTTCAGGGAACCCTTTAACTTTT-CACTTAGCAGTATTGTGATTTTGGTGGAAAGCAAT--GTGTCTTTGaaacgtttaaaa----aaaaaataaaaaacgagAACCGTAAGCCAA------GAGCAGGGAGATGCATGTGCTCTCATCGATCGTGGGAACCTCGGTTCCTCACAGGGCTTCTTGATGTGCTTACTTAACAGCCTccaaaggaattcaaaatatgGAAGTCAAACTATGTACCACCTCCCGAGAGCTACACTACTGAGAAGAAACCTCCGCCTCCAGAGTTGGATATGGCAATAAAATGGTCGAACATATATGAGGACAATGGAGATGATGCCCCACAGAATGCTAAGAAAGCTAGGCTTCTACCAGAAGGGGAGGAGACGTTGGAATCGGGTAAGGAGG

a score=15142
s chr3           145938104 1047 + 160039680 GGAGCAGCAGCTCCGACTCGTCGGATGAG------AACAGCGAGCCGGAAGACGCGGGTCGCAAGGAGGCGGCCTCGGCTCCGACGACGGGCGGCCGCGGGAAGCAGGCGGAGAAGCGGCTGCCCGGCCCGGACGAGCTGTTCCGCAGCGTGACCCGCCCGGCCTTCCTCTACAACCCGCTCAACAAGCAGATCGACTGGGAGCGGCATGTGGTGAAAGCGCCGGAGGAGGTGAGATCcccggccccgcggccgccccggggcccgacgcccgcttgcccctccgcccgctcgcccacccccggctcgcactcagcccgcgccgcgccgcgcgtccCCACGGCCCCGGGAGCCCGGGGGGTGTCAGCCCGGGCCCGCCCCTCCGCGCTCGGGGGTCCCAGCCGGGCGACGACTAACGGTGGTGACTCCCCGCCCCCCGCTGCAGCTTCTCCCCGAGACCCCTTCCCTTTGACGCCGAAGTGCCTGCGCTGCTGCCTCCAAGACAGCGTCTCTGCTGCAGCCTCCT---GAAGGGGTCAGCCTGGCCGTAGTATCTGGGACTGCATCCTCCTTTGGTAACTAAAAGTTATTAGCTTTATTTATCCAGGGAACCCTTTGACTTTTTCACCTAACAGTGTTGTGATGTTGATGGAAAAAAAAAAGTGTCTTTTAAGCCTAAAGGATTTTAAAAAAGAAAGAAAGAGGAAAGTCAGCCAGAATGATGAGCAGGGAGGTGCATGCGCTCGTATCCATCGCGGGAACCTCGGTTCGTCACAGGGTTTCTTAATGTGCTTACTCGACAGCCTCCAAAGGAGTTCAAGATCTGGAAGTCCAACTGCGTGCCGCCCCCAGAGACCTACACTACTGAGAAGAAGCCGCCGCCGCCAGAGCTGGACATGGCGATCAAATGGTCGAATATCTATGAAGACAATGGAGACGATGCCCCACAGAACGCCAAGAAAGCCAGGCTTCTGCCTGAAGGGGAGGAGACAGTGGAATCAGGTAA-GAGAGAGGAGTGT-TGTTGTTTAAGATTTCAGCACTCAGAAAGAAGAAAATC
s HiC_scaffold_1  94561733  611 + 233722169 GGAGCAGCAGTTCAGAGTCCTCAGGTGAGGAGGATAACAGTGAGCAGGAAGAGATGAACTGCAAAGCTCCAGATCCAGCAAAATTGTTGGGTAGCTGTGGAAACAAGGCAGAGAAGTGGCTGTCAGGATCTGAAGAGCTGTTCCAGAGCATGACTCACCCAGCTTTTCTCTACAATGCACTCCACAAACAGATCAACTGAGAGAAGCATGTCATCAAACCACCCAAAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCTTCCCAAGATCCCTTCCCTTTGATGTCAAAGTACCTGCAGTGCTGCCTCCAAGACAGTGTAT--GCTACAGCCTTTGAAAGAAGGGGTCAGCTTTGGCATAATGTCTGTGATTGGATTCTTTTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTccaaaggaattcaaaatatgGAA-TCAAACTATGTATCACCTCCTGAGAGCTACACTACTGAGAAGAAACTTCTGCCTCTGGAGCTGGATATGATAATCAAATGACTGAACATATATGAGGACAGTGGAGATGATGCTACACAGAACACTGAGAAAGCTAGGCTTCTACCAGAAGGGAAGGAGACAGTGGAATTGGATGATGAGAAAGAAGAACATACTTCCAAAAAGTGCA--AAGCAGAAACAAGagaatc

a score=32668
s chr3           145943675 1178 + 160039680 TTTAGTTTTTATTAGTATGCCTTTAAACGTCCAGT------GAGTAACTGTTTCGGCATAAAG----CTGAATGTGTGTTTTGTGTTGATTTTTAGAGAACTAAGAAAGCTCTCTTCTTTCCCTCTTCAAGATGATGACAAAGATGAGCGGGCATCTAAGATTCGCAGAGTGGAGCCAGGAGAAGCAGCCAAGAAGAAGAAGTAGAGAA-----------------TTGTGACTCCTGAG---------ATGTGTCGTTGAGTGGAGTG-TTTGCTTTTGTGCGTTACTATGACAGA-CATCTCCATGAACGTATTTATGTTAACGAACTAATGAGTGTCGCCTCAAG-ACTTTCCACTGTAGAATTCACTTTTTTTATTTAAAACCTGTACGTATTTACAACTCTAATGGTGACCTGTGATTGTGAACTGACAGTACTTGGAAGCATTCTGGTTATCACAAAATTGGTGACAGGCTTTGAGAGTTTGTCACATG--GACATGCCAATGTTCTATGAACCTTTTATAAAGGAATATATTTTTAAAGTAAATATATTGTATTGTACTGTGAACTTGT-GGGTGCTTTTCATTAGTATCTGTACAGTGTAAATAGATGATCATGGAAATAAAATTACTTAATCCAACCTTGTTATTACTGAATGCCACTAACATAAGTATTTGTGACAGGCAGCCTGCTTGCCCTGTGACGTTTTGATTCACAGTGGGGATTAGCATGTAGGGAGAGCCTCCCATGCTCGGGTGCCTTGTGCATAC-TTCTCTCCTACAGTCCTGGGAGGAAAGCAGACGTGAGCGTCCTCAGGTTTGTGGTGAG---AGCTTGAGGAACTGGGCAGAGGGGTACACAGC-AGTGAGTGAAGAGGAGCGGTC---ACGCAGG--ACTG--ACTCCAGTCAGATGAAGCCACCTGT-CACTCGTCAGACTTCAGTCGTTTGCCAAGAAC-------ATTATCATCTCTGCCATGTGCACTTGTATTAGGGAGGTCTCCTACTCTGATTCTGCAGCTGCACTGATAAATGCCTTATAGTGTGAGTATAAGTATTCATTTCTTCATTAGGTAGACTGAAGATGAGGCTCCTCTGTGAAAGATGAGCAAATTCAGAAAAGAACATAAGGTA------ACCAGTTAAATTTGAGT-------------CTGTCTGAGTATATGTGATA--TAAGAGACACATTAAAAA-----CCATCTGAAATTCTAATTTAACTTAGCATCTTGTTTATTT
s HiC_scaffold_1 132379340 1134 + 233722169 ttttgtttttattgggaaactttgaaagaaacagtTGATGAGAGAGATTATTTTGGAATAAAGgcaatgaaatttttgttttcctctttttttta-attactgatcAAATCTCTTTCTCTCCTATTTAAAGATGATGAGAAAGAAGAACATACTTCCAAAAAGCGCAGAGTAGAACCAGGAGaatcagcaaaaaagaaaaagtagagaacaACAAAGGACAAGATTTCTGGACTCCTAAGCCTGTTCAAATGTGTCTTTGGTCAGATTAATTTGATCTTGTG---GATTATGACAAAACATCTCCATGAAAGTATGTATGTTAATGAACTAATAAGTATTTCTTCAAGAACCTTCCACTGTagaattc-ctttttttatttaaaacttgtatgtatttaaaatacaaatggtgGCCTGTGATTGTGA------AATTCTTG--------CTGTCTATCACAAAGTTGTTGGTTTGCTTTGAGGG-TTGTCACATGCTGACATGCCAATGTTCTATGAACCTTTTataaaggaatatatttttaaagtaaatatgttGTAATGTACTGTGAACTTGTGGGGTGCTTTTCATCAGTGTTTGTACAGTGTAAATA---AAtcatggaaataaaattattcactC-----------------AATACTGTTCTTCTAAGTATCTGTCGCAAG----TCCCTTCCCACGTAACATTTTAAATAGTAGTAGGTATTACCGTCCAGAGAGTATCTCCTATGCCGCAGATTCTTGTGCATATATTGGCTCTAATAGT------------------------ATCCTCA-TTTTATATTGAGAACAACTTGGGTTGCTTGTCAAAGGTA-ACACAGCTCGTCAGTGACAAATATGGATTTTAACTCAGGGTACTGGAATTCCAA-AACATTAAACTACCTGTATACCAATCAAAATTTAGTCATTTTTCAAGAACTACACTAACTGCCATTTTTCCCATGTACtcttctgtca---------------ttaatttttc-------------------------------------tatttaat-----aataAATCTACTAAAGATACGGGACGTCTACAAAGGTTGACCAGATTTAGCAAAGA----AAAGTACAGCCCCccagtaaaatttgaatttcaaataaactgttgttttagtatatgtgatatTTAGGACACACATTAAGagtttgtttatctgaaattcacagTTTTCTGGACatagtggtttttt

a score=31737
s chr3           145946409 4159 + 160039680 [encoded data, 4581 characters]
s HiC_scaffold_1 132385618 3494 + 233722169 [encoded data, 4581 characters]

a score=29888
s chr3           145964169 787 + 160039680 AAGAGGGAAGAACATCCATGGGA--CTTCAAAAATGGGATCTGCAACAACTCCCGAA--------TTGTGAAACA---GCAGTGCTTTGCCA-CACTGTCC--AAACT--GCATTGAGGGCTGCAGAGACC--------------TTCAGT--------------------CTCTGGTGACGCAACCGGTCAGCAAACAATAGCTGCTTCCAAGCCGGATAAGCATATGTAA-ATCTGTAAATCATACTAGACTACTAGAAAGCAAAGAATTGCGGTGCATCTTTCTTTAATAAAAGTTATTTTCCAAAGCTCTCTGTC--------ATGATTGGTTAAATGCACATTTTCAAACCAGAGTTTTGGTTTGTTTTTTGTTTTTTGTTTTTCATTTCATGGCTTGGAAAATTCCAGTGGCCCTCTGCAGTTTCCTTATTGACAGGAGCTATCAGGCTTCCCAAGAGGGTCTTATCTGCCAGCACCAGCCGCTCCTGC-CAAGCTGCCAGACAGGTTCAGTGGGATTACACAGCTGCCTGCCTGAGCGCTGCGGGCCAGAAGG--------AACTCCTAGCTCTTTCCTTTCCCGGCCTGCAGGCTTTGACCTGTAAGGAGGTGCCTGAACA--GTCTAATCTGTCACCCAAGTATGCCGGAGCAGCCGTAGTAATGCCCTTTATTACGTGGCTTAGCATTGCTCCCAAGGCTCGTATT--AGGAGTTGCTTGTATAAATCGCCGCACTGGAAGCTATGCCTGGTATTTCTATAAAACCCTTTCAAGACATGATCTAATGATTCAG--TTTATTTATAGCAACCAATAGGAACAAGACCTTTCCTTTTTTTTTTTTTTTTAAGAGA
s HiC_scaffold_1 132408961 828 + 233722169 AAAAGGCAGGAAAatccataataatttttaaaaaatgaatctgcATTACCTTTTCAACAGGGCGATTGTGAAATATTAGCCATGTTTTGAAAGCACTTTCTGAAAACTTGGCTGTAAGAACTGTGGAAACCCAACGTGGACTTGTTTCTATGGCTGTTGTAACTTATTTTGCTTCAGTGATACAATGAATAAGCAAACAATGGTTGATTATGACCCAGATAAG---ATTTAAGATTTGcatatgattt---aattttaagaaGCAAAGACTTGTCATCCATCTTACTTTAACAAAAATTATACTCAAGGGCTCTCTGGCTCTTTGTAATGTGTAGGTCTCATCGCCTTTTCAAATCAGTgaatttgttt------------------------tgatgttttggaaaattccagtcacTCTCTGCAGTTTCCTCACTGACAAGGGCTACCAGGCTTTCCAAGAGGGTCTTATCTGCAAGTAGCAGCAGCTACTGCTCAAGCTGCCAGACAGGTTCAGTGGGATTACACAGCTGCCTGA--GAG---TGGAGGCCAGGAGGGGTGAACTAACCGCTTGCTTTCTCCTCTCAAAGCCTGCAGGCTTTAACCTGTAAATAGGTGCCTGCACAGCGTCTAATCTGTCACACAAATATGCCTTTGCAGAAGTGGTAATGCCCTTTATTAAGTGGCTTAGCAACTATCCCAAGACATGTATTTAAAGAAGTACTTGTATAAATTGCTATACTTGAAACTATGCCTGGTATTTCCATAAAACCCCTTTAAGACATGATATAAtggttcaaattttatttatagcaACCAATGAGAACAAAGTTCTTTCTATAAGCTCAGCTCTCAAGAGA

a score=9722
s chr3           145966180 862 + 160039680 aGAACAAGGCCTTTCCTATAGCACCAGCTCCTGAGAGCTGCCCTACAATAACAAACTAAGAAGAGCCCTCATCAGAGGCCAGTGACCGTCTGTCTGGACTCAGGCACTCTGGGCTTAGAGGGTTGGGTTTTATTCCTTTGAGAGGACCGACCCCTCCCTTCTCTGCCTATGGTGATTGATGTTTTTAATTCTGGTACCAAAAAACAGGTTTCAGGTTTCAGTTTGTTCTTGATAGTGTAGAGAATGGTTTTCTTTTTCTGTCTTAAAAAAAAAaaagatttattttatgtatgtgagtacactgtagctgtcttcagacacaccagaagagggcatcagatcccattagagatagttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagagcagtcagtgctcttagctgctgagccatctctccagcccTAGAGAATTGTTCTCAGTCTGCAAAATTGAAAAGGAAAAAATAAGTCATAAAGTTGGCATCATCT----TTGACATTTGCCATTACAGAATGAATTCCTAGGCAAGCATTACCCACTTTATATAGCTAAGATCAAGGAAAATTGGCTAAAAAGTTGAAAGGTATATTTAAGTATAAATTCTTGCCATGGAGGGCATTTAGCAGGATGCTTGGGGTAAACGGT-ATTAGAAGAAA-GATTGGGACTTTTTTTTTTTATATCAAATCGCATAGCTATTTTAAATGTCATCTATACTTAGTACTTTCTGGTGACAAAGTCCTTGTGGGAAGAGTGTTTG----TCCCCTCCTGA-----AAGTGAGCAAGTGACAGCTGATTTTACCCAGCACTAGCAACGTTCAGGTTGTTATCCTAAATGATACGAACTCTT
s HiC_scaffold_1 132409751 618 + 233722169 AGAACAAAGTTCTTTCTATAAGCTCAGCTCTCAAGAGAGGCCTTAAAATAACAAACCAACACGTGCACTTGACGGATGCC------CTTTCGCCTGAGCTCTGG---------------------AGTTTTATTCAGCTGAGA----CGATTTTTCCTCTCTCTGACTACAATGATTTAAATTCTTACTGCTTCCATTAAAAAACATACTTCAGTTTTTAGTTTATTCTTGATAGTTTGGAAAACTGTTTTc------------------------gatttgt-----------------------------------------------------------------------------------------------------------------------------------------------------------------------gaattttt------------------------aaaaat--tccctaaaATTGGAATTCCCTAAAATTGACATCCACTGTTTGAAAATAAATCCCTAGCCAAGCTTTACctagttt-tattcataaaat-gagACAGATTAGGTAAAAATTTGAAAGCGTTTTTTAAATATAAGTTGTT---ATGAAGGCTATTTGGCAGGTGACTCAGGGAAAAAGGTAATTGGAAGAAAGGAGTAGGACTTCCATT-----CATCAGATAGtgcaaatgtttaaaatatctcCAGCAGTGAGCACTTTCTAATAAGGAAACTATTATCAGAAACTATTCTGATATTCTGCTTTTGAAGTAGAAAAGAATAGCCACCAGCT-ATTCAGTTTAGCTGTAGCAGGTCACAGCTTATTATCATGAATGataagaactatt

a score=21750
s chr3           145971466 1632 + 160039680 TAATCACCTCACTGGTC-TATGGCTCAGTATCTGCTCCACATTTCCCAGAGGGAGGTTCTGTCTGGGCTG---CTTTAGTCGGCTCGCTGGCTAAGAC--ATCTTCCTAATTCCTCTTGTGTGCCTGTCTTGGCCTATAGCTGACCTTATTCCCACATGTTCTTGA-------------------CTCCTCTGTTTCTCCAGGAGCAGCGTTGGAATGTTTGCGTGGAGAATGAGCTTATAGTTTGGCACACTCTATGGTTAACAATAGCGCCAGGGAATGCAGCCCGTGCTTCTTTCTCTTCAGCCTTGACGGGGCTTGGCAGTAATTGCTACTTACTTCATTGTGAGTTCCATTATGGGGAA-AGCACTCGCTCTGCTTGTCACCCACAGCCTTGTCTCAGATCTTCCTC-------------------TTCTCTGTCGTCCTCTGACCCAGCAGTTGACTTCACGGTGTAGTTGAAGCAGACAGCTTGCTGTTCCCGGGC-TATTC------------CTCTGTGTCTTTGTACATGTTGTTCTGATCCTATGGATTCccctttctcccctctcctctcctgtccctctccctcctgtctctcctcttcccAGCCAACATTTTGCTGCTGCTTCCTATCTCAAAGTCCTT----TTCATCAGAA---TCTGACTTCTCAATGGTCATTTCCCCTAAGACC--ATGAACTAACCTGTTTAGATGCCCCAAAGACAGCAGACTGGTGCC-----TTTCTTCTTAAAGGAGAAAGCCTGTGGCTAGCATGGGGGAAAGGAGTCAGCTGTTTTGGAGAGGAACAGGATAGAAAGAAAGGGAAATCTCAGCCTAGAAACCAGTTGTGATTgggtatagtggcacgcacctttgttcccatgcttgcaaggcagaggcccttggatgtctgagttcagggtcagcctggtctacagagtgagttccaggacagccagggctacacagaaagccctgtctcaaaagagaaaaaCAGcaaacaaacaaacaaacaaacaaacaaacaGAGACGCAAAATAAAAAAGGaaggaagggaaggaaaagaaagagaaaaaaagaaaagaaaagaTAAaagaaaccagttgtagtttt---tgctaactctaacagtcacttaccaattttgagatcctgggtgagtttcctccccttcctgctctttaggcttctcctctgtaaagagggacgggtaagccctgtttctcagaactgtaaggataaggaagagggtaaaggatttagtacttgttgcagagttgattttccaaagatgttagtttttCCTT------CCCAGTGTTGGAAGAGAACTAAGCGACTGGTT-ACACTGCCTACTGGTACAGAGGAACCCTGTCAAGGTCTGCGTGTTCA----GTTTGAAACA-------------------AGAGGGTGAGGACACTTCTGAGCTGCGGGTCCTGAAGGGAAGTCGGACAGCCACCATCTAAGGGGCTGGAATACTGGGGGTAGCAATTGTGAAGAGCGGGGTCTGAGGAGCGTAGAGTCACAGCGTGGCCCAAAGGAACTGGGTGTGAATCCAAAACA-AAGAACTAGAA--------------AAAGTTGAGAGTGTTTG--CTCAGCCAAGATCCTATGGTTTCCTTAGTCCACTGGAACGTACCCAGAAATAACA---------TGGGCCTCACC-----AGGCATGCTGTAGGCAACTGCTTCCCCTTCTGCCAGGTAGCAGA
s HiC_scaffold_1 132413193 1440 + 233722169 TAATTACCTTGCTGACCATGTTGCTAAATATTTGCTCCACCTTTCCCAAGGGGAGATTTCTGATGAGCTCTTCCTTTGGTAGACTTTCTAGTTATAACTCAGTTTCCTAATTCCCCTT-TGCCTTTGTGTTGGCCGGCAATTGACCTCATTCACACATTTTCTTGGGGACGTTAGCATACCAAGCTCTCTGTGTTTTTCCAACAGCAGTTCTGGAATGTTTACACGGAGAATTAGTTTATAGTTTGGCTCATTCCTTTGTTAGC-GTAATATGGTGGAATGAGATCCTTG----TTTCCCTTCAGCCTTGACAGGTCTTGGCAGTAGCTGC----CACTTCGTTGTGATTTCCATTAGGTGAAATGGCACTCAATCCTCTTTTCATACACAGCCTTGCCTCAGAAATTCTTCCCAATTGAATGTGAAACCTCTCCTTGTT-TCCATTTACCCAGCAGTTGACCCTGTCTGCTTGTGGCAGCAGACCCCTTGCTATTCCCAGGCACACTCTGTACTTGTCTACTCCATGCCTTTACTCAGGCTGAATGAGTAGTGTGGGTGC------TTTCCCACTCCT---------------------------CTCTACCCAGCCATCATTTTATTACTACCTCTTTAGTCAAA-TCTTTGCAGTTCATTAGAAGTCTTTGATGTCTCACTGGGCATTTTCtccagaactagagaaaacaacctGTTCAGATTTTCTGAGGACAACAGTTAGATTCCAAGATTTGGTAAACAAAGGGTTAAACCTGTGGCTGGAGTGGGAAGAAAAA-----------------------------------------------------------------------------------------------------TACGAGGTA--------------------TTTAGGGACAGACTAGGATATAG---------CCAGACA-----GGCTAAAC-----------TTT------------------------------------------------------------------------------------------------------------------GAAATCAGTTGTATTTTTTAGTGTGAATTCTAAAAGCTTTTTACCAGTTCTGGTACCTTAGATGAG-TACTTTTGCTTCTTGAGCTTGAGCTTTCTTATCTGTAGAGTGAAAATAGCAAGTCTTATTTTTCAGTCC--TAAGGGTAAGCGAGA-TGCCGATGAGTCAGTATTTGGGACAGAACATGAACCTCAAAAATGTGAGTCCTGTTTCAGTTAGTTCTGTATTAGGAGACATGCGAGGGATTGGCTGAGGTTTCCTGCTAGCACACAGTAGCTGAGGTGAGTTTTCAGTGTGTATAAGACTGGGAACAAGGTACATCTgcagaggagagaagggagagataTCTGCAAAATGC-GATCAGGGAAGGAAATGGGTTGGCAGCTGTCCAGG-----GGAGCATGGAGAGTATCAAACATCATTACCAGCATTTGAGGA------------AAAACAGCCCAGAGGAGCAAGTTAGAAATTCAAAGCACCAGGATCAGAAAGTTGAATATGTTGAAAGTTGAATATCCTTGGCTTTAGCCTCGGTCATATGATTCTCTCTGGCCAATGGAATGTTGTTAGAAACAACACATCAGCTCCAAAACACACCTTCAGAGGCA-GCTGTAGGTAGCCACTGCTTCTTCTTTCAGGCAACAGA

a score=23560
s chr3           145974924  931 + 160039680 taGTGGCTTTCCCCTTGGGGGTGCCAGTGCCCAGTTGCAGGTTTGAGGTTGCATTATAGTCAGGTCAAGAGACACTG----------AAAGG----------------------------CTCCAGACTCCTGCGATCCAGCTGTTGTTCT-----TTGTAGAGTATTCACATGGGGTTTTCGT--------GCATACCAGGGAGGCTTCATAACTGAGAGATATCCAGAACACTGCAAACCCCAGTTTA----TTATTTCATA----------CTGAACTTGTCATGACTACATTCTGGGGCATGG----------ATCCAGACCTGTGGGTGTACCTTCAGTTTTCATTACTACATTTTATC--GTAAAGATTTCTCCTGTTTTCTCCCTGTCTGTGTAGCATGCAGACTAAATATAACTGTGATTCATGTATTAAACACGCATCCATTTAACTTACTCCTGGGGTAAACAGAGACATAAAACTTCTCGTGCCTCTAGGCAGTCTTGACTTCGGCATTGAACTTTGCTAGGAGCCGTGATCCC----TCTATTTGAACACTCTCTGGGCATGTAATTATGAGGTTGCCGACTGGTGTGCATAGTAAAAAAAAAAAATGGTTTCAGATTAGTGAATGCCTTTTCCATTTAAAGTAAAACATTTCCCTTCCCCC--------TCCCAGGAGTTCCTGATAGAAATGGCATTCCTACTGGGTCACtaaattataattttttaaaaaaGAT---------------------ACATATTAGATAAAATACACTAAC---------------------AATAAAACACTATGTTCTGAGGTAATTATTCTTCATTACCAGACTATTATTTTAATACTGCTAATGATATTGTTGAAGCATTTAAGAACATGTTTTCCCAGCAGCAACTGCTCATGGGAA---------GAATGTTCTTCGGTAATTAGGCTGGTAAGTGTGTCGGGATGGTGGCAGGAGGTGTT-TGCCTTTTTCTGCTTGGTTTTGCTTTTCTACCTGTCTAAGTTATCTTTGCCTTAAGA---TCTCACTTTTACCA
s HiC_scaffold_1 132419725 1001 + 233722169 TGGGAGCTTTCTCTTTTTGGCTCCTAGTATCCATTTCCAGATGTGAGACTACACTGCACTGAGGTTGAAGGGCACTGGAataaaagcaaaggaagaaaaactcaCCACCAGTTTGGTGCTCTTTGGATTCCCTCAGCTCACCTGcttttctcttcatttcagaGTCCTCAAATATTCTGTCCATCTTTCACAACTTACAGGGCATACCCTATACTTGG-----ATTCTGAATACCCAAAATCCTAACTTGGTTTTTACTTCACAGCAATTTTATCTTGTCCTTTCATGATTGCATTCTGTGGGGGGAGGCGGGAATTATTCAGACCT-TGGGTCTATGCCCAGTTTTCATTAATACATTTTATCTAACAAAgaattctcttatttctcccc---aTATATAGTATGTGAGCTAAATTTAACTGTGATTCATGAGTTAAACATGCATTCATTTAATTTACTCCTGAAGTAAACAGAGACATAAAACTTTTCATACCTCTAGGCGGTCTTGACTTACGTATTGAACTTTGTTAGGAGCTttgtactctttttttatttgaacaGTCTTTGGGCATGTAATTACGAGGCTGCTGACTGGTGTccacagttttaaaaa-----------agattagCAAATCTTTTCTTCATGTAAAGCAAAACA---CACTTTTCTCAGTATAATTTTATGGAGATACTGGTAACAATAATCTTCCTATGGGGATTCTTGAGATTcttgttttaaagtaaattttttatttttctttcttcacacgTGTTAGATCAAATACACTAGCAAGCACCATGCtaatgtttataataaaatagtGTGCTCTAAGATAATTCTTCTGTATCCGTGGA--AATATTTTAGTACT-----------------AATATCAAAAGGCATGGTTTCCTGG-AATAACtattctttgaaattaaaaactgaatcTACTTTAATAATTGTGTTTATAAG------GGGA-------AGGAGTTATTGGGGCTTTTTCTG------------TATTTAC------AAGttattatggttttaaaaaagaatcacttttatca

a score=38477
s chr3           145983620 2422 + 160039680 TTGTCCTACTCTTAAAAGCAGACTCCATTTTTCAGGATGAAATTCTATCCTGTGGTTCGTTTGTTTGTTTTGTCTTGTGTGTTTTGATTTCTTGGCAAATAAATTCACAGATAAA-TGAGAATGAGGGCTGTGGGTCTAATGGCCCTGATGAAGATTGCTTTAAGAA-------------------CGATTCAAAGGTTCAGTTGCATATCCCGTAAACTCATAAAACATTAAACTGTTTTCTGAAAGGTCATCTATTAA----TTCATAGCAAGGAATGGTCACGTAAGTGC-AAACACTATCTCAGGAAGAATGTCTAGCATCTATTTCTGTTCTAGAAAATGCCACAGGGGTGTAGTGGCTTTGCAATCAGATGCCGGGAGTAGGGACGGGGACGTCTTTCCATCTCATTGTGGTGAACTTGAACAAGTGATAATATAGATC------------------ATATAAGATTAGGGAATATGAAGTGTTGAT--GTATTCTAAAACATTAAAGGTTTCTGAATGTTAGAAAACATGAGCA-GCCGTAAGTCTTCCTTGCATCACTTTACAGGAAGGGGGGTGGGGGGAGGGACAGAAGGAATGTTGTAGAAGGCTAGATG----TAATCAAGAACC----------TCTGGATGAAGAACATGCCTTCTG---------GGTCAGTTCAGTGGG-TCAGCTGTAGGCTCAAGTTACTTTACTCAGACT--TGAAGGAGCTG-ATGGTAAACCCGACAGGTCTGCACCACAGGCATTCTGGTGAGGCGGTTTAGGAAGAGAACTGCAAACATTCCAGGGCTAAACTTGCTGTCCGTTTCCCTAAGAGC-ACAATGAAAGATTGAGAACCAGGGAGACACAAACACATC--AGAGTGTCTACAAAGTGACCAAAATGCTCTTAGCTACAGTCCCTTCCATGACTGTTAAA-TGAGCCCCGTG-CTCAGCCTGTCAGTTTG--TTCACTCCTCCCAGTCAGAGTTACTGCCACCCCA------------------GCTTGCTTGGAGCCAGACTATCCCATGGTTGTTAAATCTCTGGTGACAGTGCCAATGCAGTAGTTGTCAATTCATGAGGCACCAAGGTGACTGCTAAGCCTCTGAGAGACAAGGATACACACTGGAAGATGTCTTGGCCACCCCCT----AATGTCCGTGGGAATCTGCAAGATTAGAAAGAAAAGGAATCGGAGATAGTTGAACAGTTGAAGTCACCTTGCTGCGGTG----------------ACTGTTGCTGGAGATCATGAC--------------------AGTTCTGTGG---CTATGT-CTGAGAACGACATGTTTACAAACCTTTTAGTGATATACAACACACATATAGAAAACTAGGGCTTACATATTTAGCATTAAATTAGAT------------TTAATTTCTGTGACCCCCAAATAGAGTTAGAATTGTGAGTTAAAGTTCTCGAACCTTctcagggtgacctgaacttcccatcttcctgcctgtacttcccatcttcctgcctgtacttcccacatgctgagattacaggtgtgggtcactacactcaacctgttcggggtgtggggaggggggttgggatagaatcccgagttttgtgcccactcaaagcactctgaactgagccatagccccagcccTCTTCCCATCCTCAATTTTAAGCAGGGTTAAGTTTCACTGTGAGATGCTATACTGAGCTTGGTTCTTAGTGATGTCTAA-AGCAATGTACAGCATATTACATTGGCCAGTAAATTTCATGA-CTCTTGAATAAGTTAGCAAGTTGAATTAAGGACAGAGTCTAATATATAGGTGtgtgtgtctgtctgtctgtgcctgtgtgtgtgtgcctgtgtgtgtgtgcctgtgtgtctgtgtgcctgtgtgtgtgtctgtgtatctgtgcctgtatgtgtgtctgtgtgtgtgtctgtgcctgtgcct-gtgtgtgCAAAGCTTATGGCATTTTAAACTCTGTTAACTACAAAG-AATAAAAAGATTGTGCAATTTAG--TTGGAAGGAAAACAACTTCTGAGATAGCGATCAAATTGTGTTTATAGAACCCATTATTGGCAGCTTTGCTATCAGTCATTTCCTGTGGGAATATTTCACTGTGGAATATTTTTATGCCTTGACTATTCATAAAATAGCCTTGGGTTCCTGCAATAAAAATATCCTAGCACCGTTGGTATTAAGGTCTGAACATCGTAGTGTAACGTTTCAGATTAAGTATTGAGATTATGTCTACAAGTTTTCAGTGTGTTAC-GAAAGAGTTTCAAAACAGCATGAGAACACTGTGGTCTAGTGGAGAGTTGAGCGACGGACTGGAAACTGAAGCTGCTTCTTGTCTATAA-----CACTGCTGTCAACTAAGA---AGCTTCCTCATGT--AGTGTTTAGGATGCTGGGTTTACCCC--------AATACAACAAGGGATTATAGTT--TCTGTCCTTAGGAAGTGGGTCAATTTTGAATTTTTTAAATAAAAGATACAAAACATGCATACGaattatgtaaaacaaaaaaaatacctgaaacaatctgt
s HiC_scaffold_1 132429490 2177 + 233722169 ttgcttcatttttaaaatcagattacatttttcagaatatagtACCCCACTGTGGTT-----------------------------------TAGTGCAAAGATTTACAGTTAAAATGGGAATT-------TATTTCTAACAGGGttgaaaagaaatacattgagAATTCAAGTATTCACCAAGTGCCCTTCCAGTGTTTAGCTGCATTTCA---GAGTTCATAAAATGTTAAACTCTTTTCTGAAAAGTGACCaactaaattatttataa-aatgaaggcTTACATCAGTGCCAAGTACTATTACAG------TGTTTCATCTCTATTTCTGTTCAAGGAAATGCCACAGGGATGTAGTGGCTTTGGGATCAATCT-----------AACAGGGTTGATTTCTC------TTAAGATGAACCTGAGCAAGTTACTCTGCAGATCCCATATATGGTATATCTGGTATATAGTAAGGGACTCTGAAGTGTCAGTTCATATTCTGAAacacaattatatttttaatgttagaaAACACATTTACGCCAAAAGCCTTCTTTG--TGACTTTGTCTGCAGTAGGG--------GTGAGAAAAAGAACATTGCAAATTGCCTAGTACTATTAATTATAAAGCAGTAGTGGTAGCTGTACCAAGAATATGCCATCCATGATTCTCAGGGGAGTTTTGTGAGCTCAGCTTTAAGCTGAAGA-ACTATATGCTGAGTACTGGCAGAGCTGTAGGGCATAGAAGGCAGGTGTACATGAGAGGATTGCTGG-GAGGCAGTTTAA----AGAACTGGGCAAATGCCAGAGCTAATCTTGCCTTTGGTTCTACCCAGAGTTACGATCATAGACTGAGCATCACAGAGACATAAATACACTCTAAATGGACTAGAAAATAACTGTATCATACAGAGATAc-ttcccctctgttcctgttAAACTTAGCTCTCTGTCTCAACCTGCCTGCTTTGTTTCCCTTCTCACAGACTGAGTCAGTACTCCCCTATCCCTAGTTTGGCTCCCTGCCTTACTGGAGACCTATTATCCCATAGTTGTTGTATCTTTTGTGTCAGTGCCAACACA-TAGCTGTTAATTCATGGGGCATCAAAATGATTTCCAAGTCACTGAGAAACAAGCATAAACCCTGGAAGATGTATTGCCAGCCCCTTCCCAATTTTCAGGAGGAATCTGCCA-ATTAGAAAGATATGAAAATTGAGATAATTGA------GGAGCCATATtgttaaaacatgaaaaagatttTACAAGTATAGCTTCTGTTCATATCTTATTACATACTGAATTATAAGTTCTGTGGGCACTGTGTTCTTAGAAT--TAATTTTACAGAC--TTTACTGAAGTTTAATGCACATGAAGAAACGTAGAATTTACGT-TATAGTCTCACAT-GGATACAACTGTCTTACTAATTTCTGTGACACAAAGGAATATGTAAAATTGTGAATTCA---------------------------------------------------------------------------------------------------------------------------------------------TGAGATAGAA-------------------------CACTGTCAACT----------------------------------TTAAAACTGCATTAAGCTCAGCTGTAGTGTGCTGCATTAGACTTAAGTCTGAGTAATTCCTAGGAACAATGTATAGTATTTTATGTTGGACAGTG--TTTCATAAACTGCTAAAAAAGTTGACAAgtttaa---aagatgaaatttaa----------------------------------------------------------------------------------------------------CCCTTAAAgctcttcatatatatatttatgcatacaCCAAGTATGTGCA--GTTTCTGGTGTTCTTAAATCTGGTAACTATAAACCAATAAAAAGATACTGCAACAGAGAGTAGGAACAGAACCAGTTTCTGAGATAGAGATCAAATTGTGTTTATAGACATCATTACTGGCAGCTTTGGTATCAGTTGCTTCCTGTGGGAATATTTCATTGAGAGATAATTTTATTCCTTGATTACTCATTAAACAGCTTTGAG-TACTGAAACGAAAGTATTACAGAACTATAAACATTAATGTATGTATAT--TAGTATAACATAGTATTTTCACAGATAAGATTAT-TTAACAAATTGT--GTTTATTACtgaaagaactttaaaacaacaCTAATATAGTACGGTCTAGTGGAGAGTTAGGCAATAGACTGGAAATTAAAGccatttgttttctctaaattggaattcatattaaataaaatatatattcatcatATACAGTAGTTAAGATGCT-TATTTACACTTTGTGAAGCATATGTTAGTCAAATAGAATTAGTCTGGCTTTAGGgagt-------ttttaaatacttt-tataagAAAGATAGAACATGTGTACAAACCGTGTAAAATAAACA----ACCTTAAATACACTAT

a score=59487
s chr3           145988405 3895 + 160039680 [encoded data, 4257 characters]
s HiC_scaffold_1 132433703 3768 + 233722169 [encoded data, 4257 characters]

a score=24683
s chr3           145992735 1703 + 160039680 ccatctTAAGTGAGGTTGATAGGGTGATACAGATTCCTGTCTGTATCTTTTTTGAAGCATTTGAAACTCTGG--TTTCATTATCTTTTTTTTTTTTTTTGGACGGGGGGTGGGGGAGGCCCTGCTCTGCCAGCACCTCCAACCTTCGTGAACGGTTTCTGACAGTCTTCTGGCTTTAAATCCTGTGCTGAGACAGTTCGGCCTTCCGGCCTTTGGAAGCAAGTGCAGCTTT-----TTTTGTTTT-------GTTGTTTTGGAAGAGTGCCACGGAACATTGGAGTTGCTGGTGGCTGGAAAACTTTGAGAATTACAAAATCAGCAGAAAGTCGTGTTGTGCTGGTTTGGAAGGTCTGTGCTTCTGGATCAGAGAGTCCCCGGTCCAAGAGGTGGTGTCCGCTTGTCCTTTGAGAACGCCTTGGGCTGTTTT--CAGGCCCTTGGGG----AAGAAGTGTTCTTCACTGTTGGAGAAGGAtgcttttcaaa--ccatgtgcatatgggt-tcctggaaaacctccttaaagtgcagattgagaaggttggacaggaccctgggagtctgcgtcttcacaggctttcag----gagataaggtgctgtttggaaggccacactt-----tagtaaggACCTGAAGTTCTCCTGACCCTCTGCTTAGGAAAGACGTCCTTACTT-----AATACTTGATTCTTAAACTGACCCCAGTTAAGGCAAAGCACAGAGCATTCTCtgtttcaatcttgt------------atagatagtgcttgcaatatatgagtacactgtagttgtcttcagacacaccagaagagggcatcagatcccattacagatggttgtgagctaccatgtggttgctgggaattgaactcaggacctctggaagagcagctggtgctcttaactgttgagccgcctctctagcccGCCAACGGTAGTCTTAATTGATCCCATCTCCGACCAATCAACACTAGTGACTTTGGAATCTGCCAGAGAGGGGAGTGGATAGGAACGGTGGTTAACAGTA-------CCTGGGTCTCTGGACAGACTTTTACTGCTTCCT----------TCACCTTGGAC-AGTTTCTCAGCCTCTTGTGGCATCTTTCCTTGGGCTACTGGGAGGGCAGGAACA------TAAGTGGGTTCTGTGTA-GGCGCTT------------------GGCAGGCTTCGTGAGGTTGCCACCGTGCCCCTGGTCGTTAGGATGCC-GCTG--GTGTGAGCACATTGAAAACTGAGGGGTAAGGCCTGGGGGAGCTTTGAGGCT-GAGCTAGCGAGCACTACAGCCACAC---------------------ACACACTTCCTCTTCTGTG-CCTCTCTCTCGAATGCCGCCTGTTACTTTTGTAGAACTGAAAATGATCTCAAGGTATTCCTTTCTACTTTTTTTTTTTTAGTCTCAAAAGTGAG----CAAGCATATCGTGTGCTTGAGGGTTTTTATTGCCTGGCACAAGGGGAGAAAAAGAAAAAGTACTTTT----------CCTTACCCTCTACTTCCTTTCAGATTTATCTGGGAAATGCACACAGAGGTTCAATTTTCTTAAAACCTAAGCATAGGCTTCAGTATCTGATGCTTATAAGAATATttttctcttcttttcttttctt---------------------------------ttttcttttttttttttttttcgagacagagtttctctgtgtagtcctggctgtcctggaactcactttgtagaccaggctggccttgaact--cagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcatgggccaccatggcccagc
s HiC_scaffold_1 132437438 1596 + 233722169 CCATTTTAAGTGGTCATGGTATTATAGTGCAGAATGCCATTCa---cttttctcaaatatttgtaGCTCTGAACTCTCATGAGATATATCATCTTTTCTGGATTG----------AGCCACTTCACTGTCAGTAACAATAGGCAT-----GTAATTGTGGACAGTCTTAAAGTTTTAAATCACTCTCTAAGAGAGTGCTGTGGTCC------TGGTAGCAAGTGcagttttggtgtttttgttttttttttaattgctttggaAGAGTGCCATAGAACATTGCAGTTGCTGGTGACTGGAAAACTTTGAGAATTACAAATTTAACAGAACATAGTGTTGtgttgattt-gaagtcctgtgctGTTTAGTCAGTGATTTC-------------------------------TAAGAACTACAAAGGCTTTTTTTCTAGGCCCTTGCTACTCTATAAATTATTGTTCACTGTTTAAGAAATgtgcttttcaaaattaaaaagcatataaATGCCCttgaaaattatgttaaaatgcagattcattG---TGGTCTGAGACTTGAGCTTCTGCATTTCAAGAAATTTCCAGTATAGATGGATGGTATTATTTGGCAGTCCACACTTTTGAGTAGTAAACTTTTAGAGTtatgttt-ctcaaaattttaaaaatgcattctacCTTGTCCCAATACTT-ACACAAACACTAGCCCTAATTAGAACAAAGCACTTGAGTTTTTCTGTTCCACTCTTATATGTGTGAGTTAATACTTAATGCTTATAATATATGA--------------------------------------------------------------------------------------------------------------------------------TTTTGAGTAGTTCCTTTAA------------------GGTTGGTCTCATCTTGCAGCAATAAGTGTTA--GGCTTCAGAATCTGCAAGGCAAGAG--------GACATAGTGGTGAGCAGAATGGAGATTCTGGGTCTCTTATTAGAC---TACTGCTTACCAGGTGTCTTGTGACCTTAGACAAGTTACTGAACTTTGTGTGGCCTCAGTCCTTAgg---ttgagagaataaaaaaagatgattcATTTGGTATTGTGCCTGATGCTTAGCTATTACAGGAATACAAGCAGGCTTTGAGAGAATACCGCT-TACCACAGACCATTAGGATTCTAGATGGAGGGTGAGAAGATTAGAAGTTGAAGAGTACTGCCT---TGAGCTTTGGGAATGGAGCTAGAGTACCTGATCCCCCCACTTAGGGATGTTTAGTTATTCTgctcatcttttcttttatattctttctcttG-CTCCTCCTTGTTACTTTTGTGCATCTGAAAACAGTTTGAAAGT-----TCTCTGCTTT-------------TCAAAAACAAGAGCCTAAGAAT----TTTTATTGGTAGTTTTTATtgatag-----aaaagagaaagaggaaaagtgcTTTTTTCCTATTCATTTTACCTTT--CTTCCTTATAGATTTATTTGGGGAA-AAACATGTATgtgcataaatacataaattttagcATAGATTTAAATACATGATGCTCTTaaggatatttttatttagtttttttatattaggaattgaacctaagagcactctaccactagattgtatccccagcactttttttgaaaaaaaatttttttg-------------acacaaggtctca---tgcaatccaggctggttttaagtttacagaaatcctcctgcctcatcctcgcaagtgctgggattataggcatgtgccaccattccccagc

a score=31191
s chr3           145998371 859 + 160039680 gcAATTAATGTCACTTTTATTTTT-----------AAACATTTAAATACCCGGTCTGCAGTGACATGCCTCTCCT-------------CTGTGTTCTCTCTTTTGTTCTTTGAAGCAGACTTATTTGAGAATGTCTATGGCTCTCCACTGAAGAAACGAGAACCTGAAGATGTAAGGGGTCCCGCCGAGCTTAGAGGTCACCAGCCCCTTAACAACATCACAGTTTCAAAGAAGCGCAATTGGCTGTATCAGAGCACCCTGAGGTCTCAGAGTCTGGACGAG---AGCAAGCGAAGCCAGGACAGACGCTATTTCTCCCTCTCTCCTGTGTCTCCACCCAAGCATTGGGTATCCCA------------------CAGGCCGCACTGCACACATGCGGTGTGTAATGCTGCCAGGGCTACGTTGTCCAGAAACGGCTCTTCAGCCTTTAGCGAGGACAATGATGCGGACGATGAAGGAGAAATATGGTACAATCCCATCCCTGAGGATGACAGCTTGGGCATAGCACACGTCTTGAGTCTTGAGGAGGCAAACACCGCCGCCCTGAAGCTTCCTG---------TGAGCATGTTGTCTGCCAGAGATCTGATGAAGGCGGAGCCTCCTAGTGAAG---------------------ACAGAGGGGACGTGCAGACCTCACAGTCAAATGGAATTAATTCTGCAGATTCCATGCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGTTAGGGCACAGGACACAAGAAAGCCCGACGGCAGAGGATAGCCCTGTGTTGAAATCTGCTTCTACAGGTAAAGGTGGC-------TGTTCACCTGAGATGTCTTCCTTTTCAGG--TTTGACATTTCCTCACCCTGCACACAGATGATGAGTGCTGTA---TGTGTCTTATACTCTGTCCTTATAAAGTGAAGGTGTCT
s HiC_scaffold_1 132442347 931 + 233722169 GTgagtaatattatttttctttttcattcttttaaaaatactttaataac-----TGAAGTTTAATAACTCTCTTAGAGAATCAGGCAttatac-cttttttttcttctttgaaatagaTTTATTGGAAGATGTTTATGGCTCTTCAGTGAAgagaagagaacttgaagatctGAAGGATAACATAGAATTCACAGGTCATAAACCACTGAACAGCatcactgtttcaaaaaaacgcAACTGGCTCTATCAGAGTAGTCTAAGAGCTCTTAatccagaagaagaaaataaaaaataccacaataGAAGCAATTTATCCGTCTCACCTGTGTCTCCACCTTACCATCAACTATCACAACCTTTCCTGAAATCATCTGAAGAATATTGTACATATATGGTTTGTAATGCTACAGACTCTTCATTGTCAAGAAACTGTTCTATAGATTTTAATGAGGAAAATGATGCAGATGATGAAGGAGAAATATGGTACAATCCTATTCCTGAGGATGATGACCTTGGCATGTCAAGTGCTTTGAGTTTTGGAGAGGCAAACCCTGGTACCCTAAAGCTTCCTGTGACCAGTTTGAGCATACTTTCTGATAGTGATCTAATGAAAGCAGAGCAGCATACTGAAGATTTGTTGTGTTCTTCCGAACACATGGGTGATATTCAGACCATGcagttaaatgaaatgaatcctACAAATTTCATCCATTCTACAGAATTTGTGACACAGCACACGCAAAGGCTAGGACGTAAGACACAAGAAGATATGATGGTGGAGGACAGCCCCATATTGAAATCTCCTTTTGCAGGTAAAGATCATAcattaatgttttctt------tcttctttttctagccttTGATAATTGCTAAAGCTAgatataaatgtctttttttatgttcttttcctTATGCTC---ACGTATAAAGTGAACATATTT

a score=85063
s chr3           145999835 3101 + 160039680 CAGAAGAAGCT-----CTAACACATAAAATACTTCACGTTCACAATGAGTGAC---AGTAGAAACTGTTCAC--AGTTTATAAAAAGATA-CAGAATATTAAATTCCTTAATAATTTAGGAAAACCCAGAGCGGTTTAATATACTAGGTAGCCTATCTAGGTTATAATAATTACACATATAAATTTAAATATATacacacacacacacacacacacacacacacacacacatacatacacacactacatacacacacgtacaTAAGTGTTCTAGGTGAGTAAGCCAGAAGGACTGTTTTGTGATAGGCAGTACAAGAG-ATGCTTTGTCCCGTACGCCGCAAGCGTTCCATTCCTTACTAGCTGTTTACCAGAAAAGCCCAGGGTGCAGATTTAAAATGGTCGCCGTTCTTTGTACAGACAA-----------TATTGTCAGTACAGAGATGGATGGAAGGAGACCTTTTGTCATTGCTTTCAAGAAAGG--TCATTTAATCTAT----------GAACAAATAAACGTGTT--CACATTTTAACCCTGAAGTA--GCTTTGCCAAGATTAGGTTCTGGTCTTAATATTATTAGATCTTTA--TGTAAAGGAGTGGACAAAGCCTGaaaaattaa---------------------atattaaataattGCAACGA---------------TACCACtttgttttg--------ttttgttttgttttgtt----------ttAATTTAAG---GAAATT-------CTagcctggcagtgg------------------------tggcacacgcctttaatcccagcactcgggaggcagaggcaggcaga----tttctgagtttg---aggcc---agcctggtctac-agagtgagttctaggatagccagggctacacagagaaaccctgtcttgaaaaacaaaaacagaaacaaaaaacaaaaaacaaaaaaattaaataaataaaaGGAAATCCTAATTTATGTATTTCAGAACATATTTTTATTTTGTTCA---ATTAATTTGAAAACTTATTGGGAACATGTACA--------AACTCAAAAA-----------TGAAATTGATGAATC---------CATCAGTTTTAACTGGTAGAG-------TTTAGCA--------GTTAGCATA-----------------AACATCACTGCTTCAGCAGACCCAGCTCACCGG--GAAGTTTAGTTGGATATACTAAACTGTATATCCTAGTAGATTTTTAGAACAAAGAAGGCCTCTTTGCTACCCAAGTTACGGACTTATTTGGTTTTTAACTTTTTTTTTTTAAATCAACA-------------GCACTTGGCTTTAGAGGG-TACAAATACAGAAGCAGGACTGTGCTGTGGGAGTTCAGTTTCTGGTTGAA-TGGACTGAGATGG-AGCCTTTTCTAGTTCCCCCAAA--------ACTTCAGGTTCTGCACTCACTG----------CAAAGGGAAAACTGTACAAGGAGCCCTG--GCCCTGCGTCCCAGGCTTCAGAAGAG-CAGGTGGGCGCAGGGCGCATCCTCTTATCCAAATCCGTCT------------------CTGTGCT------------------GAGAGCCGAGTGTGTGGGCCTCTCAGTCCAGGTGA------GGACCAGTTTGCCTACGCGGTA-----------GGGAT----------------AGAGCAGAAGTCGGTCAGTTCTCTTTATAATACTGTTCTCTCTGCTTTTTAAGGTCCCGGGATCATAGTCTCTACAAATAGGACTGAACTGAGAGCGATGGAGCCGTCTTCTCCAAGCCCCAGTCCTGGGAAGAAAGGCAGTTCCATTACTTGGTCTTTACCAGATAAAATAAAGTCTCCACGCACTGTGAGGAAACTTTCTATGAAAATGAAAAGGTTGCCAGAATTCAGCCGAAAGCTGGGGGCCAGGGGAGCTTTGCACTATGTGAATAATCCGGATAGCACCCCTCCTTTGTCTAAATGGAACTGTCGAGAAATTCCTCAGGGTGTCACTCTGACTTCCGGGAACACCACCA------------GGAACGTGATAAGCCGGTACCATCTTGATACCACCGTATCCTCTCGGCACAGCTACCGGAAGAAACCCCTTGGGAGCTCGAAGTATTCCTGCAAGGGTGGGTACCTCAGCGACGGAGACTCACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGAAACTGTCCCAAGCAGTTGTAGCAAAAATGAACTAGACATCGGTGCCTTCAGACATTACAGCTTTGCGGATCAACCCAAATGCTCGCAGTACATATCCGGCCTCATGAGCGTACACTTCTATGGAGCTGAGGGTTTAAAACCGCCCCGGATAGATTCGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAACAAAGCCAGAACGGCCCTGCTCACCTGTCGGACGACCTTCTTAGACATGGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGAAGCTGGTGGTGTTCAGCTGGGAGCCCACGCCGAGGAGGAACCGCGTGTGCTGTCATGGCACAGTCGTCCTGCCCGCTTTATTCAGAGTTACAAAAACGCATCAGCTGGCTGTCAAGCTGGAGCCCAGAGGCCTTATTTACGTCAAGGTGACCCTGATGGAACAGTGGGAGAATTCTCTGCACGGCCTGGATAAGAACCGCGAAGCGGTGATGTTCGGAGTCGACATTCAAAAAGTTGTAGAGAAAGAAAACGTAGGCTTGATGGTGCCGCTGCTGATACAGAAATGCATCGTGGAGATTGAAAAGAGGGGTTGTCAGGTATTGTAC-----TGTTTCTCTGCT---TTTTCCTTTATTGA-TTGGTTGT------TAGGTCTTGGGAAAAGGAATTCAAGGTAAGGCTAAGTGGGGAGAAAAGATTTAGATATTTCCCCGGCCCTGCGTTAcatcgtcaccatcatcatcaccaccaccaccatcaccgccatcaTTATTTTGGAGTGTGTTTCCTGTCT-TAACTTTCGTTG-CTGTGATTTGAGAGCATGCTACACAGATCTGCAGTTTACGTTGTGAAGTGTGTGGGCTTTAGGGCTGGAAAGG-------ACTAGATTTT-------CTTTACAGTGACTTGTC-AGGAGAAG------CTGATGACACAG--AAAGGCTCAGCTCTTTAACAGGAATTTCTGCATGCTTTGAAATTCT----GGGGCAGTTC-AACAGTGGATTCCAGGGTCTGGCTTCACATCCATGTTTAACCCCGTG--CTTACTCCCTAC--CATCAGTC---CTACTTGGCGTGTGATCACACTTGC--CTCTTTACTCCGGGGCTGCACTCCAGATGCGGAGAGCTCCTACAGATAAGAACGC
s HiC_scaffold_1 132449016 3334 + 233722169 CAATAGAAACTACTAGCTAAcatgtattatatttaattttaacaataaaaaacttcaagaggaattATTTATCTAATATGTAAAAAAAAGTCACAATGTAAAACTccttaaaaatttaatgaaatccagAATAATTTCATACACTGGGTCATTTTTCTAGGCTCTGATAAA-------ATAGATTAGTGTTTGTAGACTAACACAAGC---------------------------------CTTTGATTAC-----TGTA---GAATGTTTTAGAATAGGAAGCCTGTCAAATTGTACTGTGATTTGTAGTATAAGGGGATGCCTTGTATAGT---TTATAAATGCTTGATTACTTACTAGCTATT-ACCAGAGGAGCCCAGTAGGCATACTTGAAATAGTCTTC--TCTTTATAAAAGGAAACTTACTTCTTTGTGATTAGGGCATACAGAACAGGGAGGAGATAGAATATTAATACTTTAAAGAAAGACTTCATTTTGTctattgatgttttaaaatgaataaacacttttcCTCATTTTGATTGTGGAATATAGTTTTACATAGGTTGGCATCTGATAATAAGGTTATTAGATGTTTGCCTGGAAAGGA-TAGTCAGAGTTTGAAAAAGTAATGTAAATTGTAAAAAAGTGGGATATTAgattatttaaaggaaaagttttaaatttataatactaggttttagaaaatatttttagtttgcttTATTAGGAACagtacaaatataaaaatgaaatttggcaACCTCTTTTTTTAGTGGGAATGTGCAAGTTTAAATAATAGTTGAGAAAAGTCTTTAATATCA--ATTTAACATCTATAACTGGGCATAAGTGTTTAGGAGGATGGAGAGGCTCAAAGTATAGCATTTGAGAGTATACGCTCTGAAAGTCAGTGCATCGCTTTCAAACCTGGTTCTGTGGTCTTGCAGC-----CCTGTAATCCTGGACGAATTTGACAACTGTATGCCTGAGGCTCCTCATCTA-GTAATGGGGTAC-TAATGTTATTTACCTCATATAGTAATATGGGAATTAAATGAGGGTCTGTGCGTACTGAGTAGCTCAATAAGTGTTGGCTGGTGTTATTATTgaatcataataaaatattagttt--aCTGACAATAAActacttttaatattatttttgtcaaAATACTTAAAGTTAGATTTATAACATCAAAATTCAATTA-------CTCACTGACTAGAGTTTGCTTAG---TCTTTGGTGATATAGTCTA--AGAAATTTAGAGCAAGGAAGGGCTCTTGGTTGCCAAAGTTATAAACTTGtttagtttttaa--gttttttttaaaaccagcaCTGCTATGTGGTAACACTTAGCTTTAGAGGACtataaatatagaagaaaagCATTCTTATAGTAAC---ATTTCtagttaaaatatattataatagcAAGTTTTCTTAGTTTCATCAGATATATACTATTCAAAATTAT--ACTCACTGGACCGTATTACAGTAGGAGATGTTTAAAAGTACTTGTATTACCCTTTTTCCCAACCTTCAGAATAGGAAGATGGAGAAAAGAAGCTTCTTTCTACTGTAAGCTATTTGGACATCCTTGATATGTATTGTGCTTGAGCATGGAGATAAAGAGTGACCTGAACTACTAAGTCTCCCCACTAAGATGAAACAAGGGAAGAATTTGTCCATGTGATACCTGTTTAgttgatatttataaaataagactaaaagtagaaatgaaaatgatcactttataat-cttttttcttt-ctttttaaggtcCTGGTGTCTTAGCTGCTACAAATAGAACTGAATTGGGAATCATGGAACCATCTTCACCAAGCCCGAGCCCTGTGAAAAAAGGCAGTTCAATTAGTTGGTCTTTaccagataaaataaaatctccaCGAACTGTGAGGAAACTTTCCATGAAAATGAAGAAGTTACCAGAATTTAGTCGAAAACTAAGTGTTAAGGGAACCTGGAATAATATAAACAGTCCAGAGAGTACACCTTCCTTTTCTAAAAGTAGCTGTAGAGAAGTTCATCATACTGTTATTCTACCTTCTGGGAATACTACCACCGCTGCCAAGAGGAATGTTATAAGCCTGTACCATCTTGATACTACTGTATCTTCTCAGCACAGCTACCAGAACAAAACCTCTGTGAATTCAAAATATTCCTGCAAAGGTGGTTATCTCAGTGATGGAGACTCACCTGAACTTATAACTAAATCTAGCAAACATGGACCTGAAAAcaaatttggaaaaggaaaagaaatcattccaagtagttgta---aaaatgaaatagacataGATGCTTTTAGACATTATAGCTTTTCTGATCAACCTAAGTGTTCACAGCACATATCTGGGCTCATGAGTGTACATTTctatggggctgaggatttaaaaCCCCCTCGGATAGATTCAAAAGACGTCTTTTGTGCAATTCAGGTAGATTCAGTAAACAAAGCAAGAACAGCCTTGCTCACATGTCGGACAACATTTTTAGACATGGATCACACTTTCAAcatagaaattgaaaatgcacaacATTTGAAATTAGTAGTATTCAGTTGGGAGCCCACTCCAAGAAAAAATCGAGTGTGTTGTCATGGAACTGTTGTTCTGCCTACCTTATTCAGAGTGACAAAGACACATCAATTGGCTGTCAAACTTGAACCTAGAGGTCTTATTTATGTGAAAGTGACTCTCATGGAACAGTGGGAGAATTCTCTTCATGGATTAGATAAAAATCGAGATTCAGTATTATTTGGTGTTGACATTCAAAAAGttgtagaaagagaaaatgtaggATTGATGGTGCCACTCTTGATACAGAAATGTATTATGGAAATTGAAAACAGAGGCTGTCAGGTATTATTTCACTGTGTTTCTCTACTACCACCTCCTTTATTGATTTAATTATTGATTATAACTCTTGGG-GAAGAAATGCAAGGTAAGGTAAA--------AAAAATTGTAGACATTTTCCC-ACTCTACTCTTTATTGTT----------------------------TTGGTATTACTATTTAGGA-TACAAGTCATAGCTACAACCTGTGTTGTCAGTGACTT--GAGTTTGCTAgatgttttcctaatttgtgCTGTGA-----------TTCAGAGCTGGGAAGGTTTGATAAGTAGAGATTAAGAGGGCCTTACAGTGGCTTTCCTAGGAAAAGGTAggactgataatataggcaaatcctaattcttttaagaaatgtttccaCATAGTTTGCCATTCTAAAAGAAGAAGTTCTAATAGTGAATCCTATAaccctgtttcatttttaaaattaactccCTGCTCTTATTTCCTACTGCCTCAGTCTGTCTCTTTGGAAGTCAA--AAACTTACCACTCTTTGCTTTGGGATATCATGGAGGCTGAGGAGAGGTCCTATTAATAAGAACAC

a score=19041
s chr3           146006825 704 + 160039680 TTATTTGTTTTAAAATTTAAAATAGGCTTTATTTTCTTCTGTCACAATCTCATCAATTAATTAGAGATTTCAGAAGCT---GCATTTGAGGTGTTAGGATGACAGCAGGGTATTTTTGATTGTCAGGTTCATGGGATTTATATCATGCCATCATATTCATTATCGTCT------CTGTAACGCGGC----ATTTTGTTTCTAGGTTGTAGGCCTGTATCGATTGTGTGGTTCAGCGGCGGTGAAGAAAGAGCTTCGAGAGGCTTTTGAGAAGGACAGCAAGACTGTTGGTCTGTGTGAAAACCAGTACCCAGATATAAATGTAATAACAGGTAAAAACATGGGCATTATTTTGTG----TTCTGTAGGATA--TTATTCTATAGGAAAGAATGTGGAAATAAGTGTTTATAACCTACGTTTGATTTGCTTTTGTTCTGAAGTCTTGCTTTC----CTTCATAA-----ACTGACTGTTTATTCTCTGAGGGGAGGAACTAAGATGCAGATCTGTTACTAAGCAGCCAACAG----------------------------------------------------CAGACCTGTGTCTTCA-----GGAGAGA--AGCAGCCGCAGGAG-GCAGCCTGACTGG---------------CAGACGAGTGA----CTGATTAAAAAACTTAGAC----TTACTCGGCAGA--GGATCCATTAAAGTGTTTTGAGTAGCAGACTGCAGTCATTCAAGGCTATTTTGAGGGATGTTAATCAGGCAACTGTACTTGATGGACTTCAGAGACGAGAGGGAGAAAG
s HiC_scaffold_1 132455718 790 + 233722169 tcattttcttttaatcataATATAGGATT-ATTTATT--------AAACTAATTA--TAATCTGAGATTTCAAAAACTAAAGTATAGAACATATTTGATT-----CAGAACACATTTGATTAGCAAGTTCATGT-ATTTGTGTTGTATTATCATATTTTTACTTGCCAAATTTACTGTAATGTGGccataattttatttctaggtAGTAGGACTGTATCGATTATGTGGTTCGGCAGCAGTCAAGAAAGAACTTCGAGAGGCTTTTGAGAGGGACAGCAAAACTGTTGGTCTTTGTGAAAACCAGTATCCAGATATAAATGTAATAACAGGTaacaa-atagattttattttgtacacTTACTGTAGAAAGACTGCATctgcaagaaaaataattcaaacac-tATTTTTAACCTaaatttaatttg-tattattCTGAACTCTTACTTTCCTTTCTTCAGAAAAACTACTCACTG-TCATTTTCTATCCAGAGATACTAA-CTGTGATCCTGCTCCTAAATAGCCAACAGCTCTTGGGGGAAGTGAGACTTACATTAAACTAGGTATAGGTATAGTAGGTAACAGACCTCTACCTTTGCAGATGGATAAATCAAATGTCATACGAGTTCAGTTTTATTGGAGCTTAGGTAACAAAAAGATGTTTGACCCTCTGATTAGAGAACTTAGGCTTATTTACTAAGCAGAAGggattcattaaatatttttgagt--ttgaATGATATTATTAAGAATTGTCTTTAGGAATGTCAATCTGGCAACTCCATGTGATAGatt---gaaatgaaaaaggaaagg

a score=18407
s chr3           146014080 544 + 160039680 TTACTAAAGCAACTTACGGGAATATAAGTCGCCAGTGTTTTGC----AAGAATCCC----TTGTGTTCATATTATT-TTTTCAGAGTGTTAAA-GCTGACTGCCATAATGTTTGCATTTCTAAAGAGTTCACTGT----ACTTACCGGACTGTGAAGACCCATCTCTACTGTCTCTGGTCTA----ATTTCACAGGGGTTCTTAAGGACTACTTGAGAGAACTCCCTTCTCCCCTAATAACCAAGCAGCTGTATGAGGCTGTGTTGGATGCCATGGCGAAGAGTCCTTTGAAAATGTCGTCCAGTGGTTGTGAGAACGAGCCCAGTGACTCCAGGCTCACTGTGGACCTCCTGGATTGCCTGCCGGACGTTGAGAAGGCAAGTGTGCTTGATAGCCGTTTCTCCCGAGACCCAGCCCGTGTGTTAGCTCACATCATCACTGTCGGTTAGGACTCA-------GACATTTGTGGCAGGT--GGCCTTTGGCTCTGCCTTTACGGC-TTCTGAAACGTCT---CTTAGAGATCAGTTTTATGTTTTCTGTGTGTATCGTTAGCCCAGGCATGAGTGT
s HiC_scaffold_1 132464071 560 + 233722169 TTatcaagataattt-taaaaatgcaaaatgctaGTGTTTTGCTGttaatacttttaatattttgttgcttttattctttttagaatattaaaagttggctataata-------cattt---aaaaattcacttttgttctttattttactctGAAAATCAATC---ACTGTCTCTGATTTGTACCCCTCCAAAGGTGTTCTTAAGGATTATTTAAGAGAGCTTCCTTCTCCTCTGATAACAAAGCAGCTTTATGAGGCTGTATTAGATGCAATGGTAAAAAGTCCTTTGAAAATGTCATCCAATGGTTGTGAGAATGATCCAAGTGATTCTAAGTACACTGTTGACCTGTTGAATTGTCTGCCGGATGTTGAGAAGGTAAGTATAATTGGCATACATTT-TCCTAAAAGCTAGCTAATGAATTAAATGTTAGCAGCAGAGCTACTTACAATTTAGTTTTTTGACATTTGTGACACTCAAGAGTTTAAACCCTGTCTTTACTACTTTTTGAATAGTATGAATCTacaaatcagttttattttttctacatcTGACTTTAGCCTAGGCACGAATAT

a score=25808
s chr3           146015589 658 + 160039680 ACTTAGGCAACCCTGAAGATGTTGTTGGATCATCTGAAACTGGTGGCCTCCTACCACGAAGTGAATAAGATGACCTGCCAGAATTTGGCTGTGTGCTTTGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTCAACCCACAACAACAGAGTCTTCACCGATTCTGAAGAGCTTGCCAGTGCTTTGGATTTTAAAAAACACATCGAGGTTCTTCATTACTTGCTCCAGCTCTGGCCAGGTAGAGGATTCTCTGGAGTACATTTCTTTAACAGCAATGGGATGTCTGGATTAGCTAATGATTAAAATGTCCAGATATGGTTGGGA------AAACAAATCTAGATTTTTTTTTTTTGCTTTTTCTGTAC--TAAGGAATTGAGACCTGCTCTGTATTGTTTGCTATTTATATTTTGTGT--TTGCTCATAACATTGTAGACATTTGAG--CCATCGTATATATtttgggcttagtaaaagctggctcagattgctggttgtgccactta-gggcactc-tgactttgggaaactctttataaccgtagacgtaactgtgttccatcttaatc------------tcatgagtttatagactttgtgtgaaaattaagtaccaagatgtccctagggtgctcagcacagcttttagcacataataTTCTGTTGCTCACCTTAATTT
s HiC_scaffold_1 132477836 646 + 233722169 atttaggcAACCCTAAAGATGTTGTTGGATCATTTGAAATTGGTGGCTTCTTATCATGAAGTGAATAAGATGACTTGTCAGAATTTGGCTGTGTGTTTTGGACCAGTGTTATTAAATCAGAGGCAAGAGACTTCTACTCATAACAACAGAGTCTTTACTGATTCAGAAGAACTGGCAAGtgctttggattttaaaaaacatattgaaGTTCTTCATTACTTACTCCAACTCTGGCCAGGTAAATGGTTCTGTGGAAATAATTTTT-----GGTGATAGGATGCCTGAATTACTCATT-------------ACATATGGTTGTAAGTGATTgaagaaatct--ttttttcaatTGTGCTTTTT-TGAACAGTTGTGAATTCATACCtgatttttagatttttcaatttatattttctgcCATTGCTCATAATATTATAGACATATAAGGATCACTGTGCACATTTTGGATTCAG----ATCTGGATCTAAATCTTGCTTGTGCCACTTGTTGACAGTCATGACTTGGGCCAA--GTTCCTAAACATAGA---GCCTCAGTATCATGTTTGCCTAATGGACTTAATCATAAGCTTATAGACTT--------ATATAAGGGTTATTATACTTGTGAGGTGCTCAGCAAAACTTTCGGTACATAATACTGAATTTACCCCCTCATTTT

a score=94078
s chr3           146019018 3030 + 160039680 AGTAAGCGATGTAAGCCTTGTTTTGTACGAAGT--------CCCTTGTGCCTGTCGCCTTCTGTACGACCAGGACAATGCAAGCAGATAGAATGTGGCTTGTCTCAGAGGGAAATAGTTTAAGTATGAAGAATGTTATTTGAGGTTGTTACATCTCTAACCAGAATTGGGAAATAAAATATCTGTGCTATTTCCAGGCCAAAAAAAAAAAAAAAAAAATGAAGACTGTTAGTAGCTAATGCTGTATAACCC---TCAGGTAACTGTCGGCCAGGCCTAGTATTCCTGCATTTTATCAAAGTGGAATTTGGGCTGCTTGGTAAATGTTGATGCCTGCTAACTACTGTAAAAAAGCCCACTAAGGTCAGAGCT---AGAGCGATCACGTTAGCTGCCTTTGCCTAGGCTAGACGTCCGTACACGTTA-ACTTCTTGTTCCCCGCTGTTTACA---CACAGTGCCTTGCCTGCTTTTTGCTGTAGTCTTTAATTCGAGAGCAGCTCCTTGCTTAG----------AATTAGAGCTAGATAGCAATTAACTTGCACAGAAAATTAATCAACGTTGGGAGTTTGAT------GGGGAC-TGTTACTATTCAGGGTAACGTAGCACCTCTGAGTGTTGTACTACCTTGTACGCCTAATCCTGATTATATGTGGTAGTAGAAAAATTACTACGGAATACTTTC-------AGTAGA-ACGCATGTCTCTGTTA-AGTGCATGTTGGTAGTTGATTATTAAGTGGCTTCATTGTCTGCTCTGTCTTTGTAAGGCCACTGA-----CTGTCACTAAAGTGTGCTTGTATTGTTCATTTCTAGTGCAACGCTTAACTGTCAAAGAACCCAGAGACAGTTTGTGCCTGGAGCAGTCGTCTTCTCTGAATTACTTGAGGCGAAAGAAAGAGCGGCCGTGTGTGTTAAACCTGAGCGGTCCGGATTCATCAGGGGTGCTGAGGACAAGGCAGGCCCGATTAGACAGTCCACTCAGCAACCGCTATGCAGGAGACTGGAGCAGCTGTGGGGAGAGCTACTCTTTAAATACAAGAGGAAATGTCAAGAATTTGGACTATGATGACGGCCCCTTAGAAGGTGGAGAAAGTAGACAG---TATAGCAAAACAGCCGGAGCGGAAGTCATGACCGCACAACGAATCCCCATGTCAGGGGGGTGCACGTTTCAGACGTACTTGACGGTACAGACCATTGAATCCACGGTGGATCAGAAAGCTAACCTCAGAGATTTGCAAGAGAGCATTGATACTTTGATTGGCAATCTGGAACGTGAGCTCAACAAAAACAAGCTGAACATGAGTGTTTGAGATGGACGGCTTGTTTTATTTG--TGATGATGTCATCAAGTTTCATGTCAATCCTTTTTCTGGGGAAAAAatatatataacatattatatatatatatata-tatTGGATCCTTAAGTTAATTCTTAATAAGTTCATGTCATTCAATTATAAACACTATTCATTAATATGGTTATTTTACTTGT-------GAACTGAGCTGTTCTGGGCATAAAGGTAACCAGACCT-TGGGGGATAGTTTAATAAACCTTGCCAGTTGTATGGAGGAGACATGC--AGATGTTTGTAAGGGTCGGGTACATTATTATCCCGA----CAAGGCTTCGGCGAGAATGTTCTTCTGTACGTGGAGACGGATGTTCTCTGCAG-----------------------AGGACACTGCAGCTG----GACTGATTTGCAGTCAGAGTCCCTG-----TGCAATGTCATTTGGTCATATTTCATTTGCAATATGAATGCTGCTGCTATAAGAAAAATTTT-TATAAAT----GTAAAATTATACAGGTATTAATGTATTTTGTATTAACATTTCGTAATTATTTAAGCttataaaattaaatatttttatGGTTCTGAGA----ATATATATTTATAACTTAATTATGCATATAGGTTTTAGAATGAGGGAAGGGGTTGGTTACAGCATTCCAAATATTTTAAAA------------ATAAGGCCAAAGTTATTAGCTTAAAAATGTCTTTTTCAGGGAAAGAATGTTTAAGTTAAAAGACAAGTTACATAAGACCACTTGAATAAAAACGCACCAGAACTATTTGAGTAGAAGCAATTGCCTTTCTGTTTTTGCTTTGTAGACA----CAGTCTCCCCTGTGGAAAGTTGTATTTT-------ATGTTGAAGTCTTTCAGCTTCATAAGGGATCAAGTGACCAGATGCCTGCACTAGTGACTTAA-----AATGACTCTACCTGCTCTGTGCATCTCTGTCTCCTGTGATGCTCTAAGTATTTATTTATAGAGGTATCCTTAACATGCTGACTT--CAGTAACTGCCCTTGTTTCTAAGGAAGTCATCTTGCCAGAATGCTACAGGTTACAAATTTTTTAAA---------------------------------------------------------------------TGTATTAAAA-----------------------AAAACTTTTATACTTACAGAA-TGTGTAATTTTAGAAGTATAAAT-GAATATGAATTGCCAAGTATAAAGTGTGACAGCCATAAAAAAAACCAGTTTCTCACTATTTTTCTAA-------ATATTAAGGTACTTCTATGCAATACACAT----------AACACCCATGTAATTTGAAAGCCTAATAGTATGAAGAAAAATAACTATTTTTATATGAGACTTTCATGTTTTAAAACATTGTGTAAC------AAATGTAACCAGAGGTGATGCAGGTGTACACCATGGGTTAACATTTCAAATGTTTTCTAGAGAAAGTACCCGTGCTTTTTGTTTGTTTGATTGCTATGCCAT--GTATAATACATAAAT-------------AAGTAGTATAGGGGTATAAGTGCTTTATTAAAATATTATAACAGTGACATGCTATTGTAATTGATTTTAAAGATCACATTGATATTCTT---Gttgttgttgacagactttctttgtgtcactctggctgtcctgga--------attagctttgtagacaaggctgtcctctacctcggagatctgcctacctctgcctctgaagtgctgagac--taaaggtatgc-------accaccacacccagGCCACTTTCATATTCCTAAAGAA-GTTATCCAT--AGATATAT---AGAGCATTGAACTGTCCAAAATTGGAATTTTCTGGTGTCTGAGATACTTTAAAGCCAATTCT----TTCTTACTTTGTTTTTTGATGAGAATGGTTCTT--GATCAGTCTCT
s HiC_scaffold_1 132481746 3178 + 233722169 AGTAAGCAATAAAGCCAAAGTTTGTtatgaaataatgtttttctcTGTG---GTAATCTTATATATGGCTAATACAATCTCAG-AGATGCAGTGTAACTTACAGCAGAAGAAAACAGTCTTAAAATTAGGAATGTCTTTTGGGATTGTTAAATGCTTAAtcagaatgggaaaataaaatatctgtacTATTTCCAGGC--------------AATAAATGAAGACTAATAGTAGCTAATGCTGTGTAATCAAAATCAGGTAACAGATGGTTAAGTCTAGTCTTTGTGTACTTTATCCAAGTGACATTTGGGCTGCTTAGTAAGTTATGACAC-TGCTGCTAATTGCAAAAAAGCCCACTAAGGTCAGAACTTTTAGAGTAATCACTTTAGATGCCTTTGCCTCGTTTAG-TGTTTGCAGataatagaatttttgttt-----tgtttgtattccaACATGCCTTGCCTGCTTTTTGCTGTAACCTTTAATTTAGGAGAAGCTACCAGCTTAGCTTCTGTTTGAATTATAGCTAGATAATAATTAACTTGCACAGAAAGTTAATCAACATTGGAAATTTGATTTACTTGGGGACATTTTGATATT-AGCATGAT-TGGCATCACTGAATATTCTACTAGCTTCTACGCCTAATCTTGATTTCATCGGgtgataaaaaaataattatggaatGCTTCCTTTTGATAGTATAtatgcatgtttttgttttaatgcatGTTTGTAGTTGATTATTAAATGGCtt-atctttacttttgtttttttaagaccaGTTGGACTCCTGTTATTAAAGCAAATTT--ATTGTTGATTTCCAGTGCACCATGTAACTGTCAGAGAATCAGCAGACAGTTTATTCGCAGAGCAGTCATCTTCTCTGAACTATTTGAGGCGGAAAAAAGAACGACCTTCTATGTTAAATTTGAGTAGTGCCAATTCATTGGGAGTACTTAGGCCAAGGCAGACCAGATTAGACAGTCCGCTTAGCAATCGTTATGCAGGAGACTGGAGCAGCTGTGgagaaaactactttttaaatacaAGAGAAGATTTAAATGGTGTGGACTATGATGATGTACCTTCAGAAGATAGAGAAGATAGGGAAGGttatggaagaatggagggaccAGAAATAATGATTGAACAGCCAATTCCCACATCCAGAGAATGCACATTTCAGTCATATTTGAGAATGCAGACAATTGAGTCCACTGTGGACCGAAAAGTTAATCTCAAAGATCTACAAGAAAGTATTGATACTTTGATTGGCAACCTGGAACGTGAACTCAACAAAAACAAGGTCAACATAAGTATTTGATATTGAGG---CATTTTATCTGATTTTTAGTGTCTTAAAGTTTCAGattactcattttcttt---------tattaactttacagtgtttttattttttcactcctGAAACCTTCAGTTAGTTTCTAACAAGTTCATATGATTCAATTAAAATCACTATTCAGTaatataat--ttttacttatttcattagaa---aatttttccagaaataaaGGTAACCTGAATTGTTTGCAGTATTTTAATGAACCTTGCCAGTTCTATGGAGGTTACTTTCTAATATACTTGTAAGGTTAAGGTAAGTTACAAGCTcaagtttttgtattttgtagGAACTGCTTTTCGATA-GCTGAGATAGATGCTCCCTTTAGTAATAACTAGTCCTTGTCCCAGAGGAACACTGCAGCTGCTCAGTGTGATTTGCAGTAGGAATTCTTGTACACTGCAACATCATGTGGTCTCATTTCATTTGCAATGCAAA---TGCTGCTATAAGAAAACttttgtataaataaaagaaaaattatacaaatattaaTGTATTCTATATTAACATTCAGTAATTATTTAAGcttataca---aattatttttataatcctaaaagtatgtatatatttataagtgCA-TATATGTATAGATATTAGAGT----GAAAGGGTTGACTATAGAATCACTTGTATTTTTTAAGATATATATGTCATAGCACCAAAATTATTGACTAAAAA-----------------------TTTAAGTTAAAGAAAGATTtacataaaaacattaaaatataaacactctAGGAGCATCTGAAGGAAATAAatagtctttccttttttgatttaTAGGCAGTTGCAGTATTCCCTGTGAAAAGTCATCTTTCTTTTAAAGTGACAAAATCCTTCAA-TCGTTAAGTGATAAAGTTCCCAGCTTTCTGCACTAGtaacttagattttaaaaacttcaacTCTTCTATGCAT-TTTATATTCTATGatgtgttaaatatttattt-tagtggCACATGTATAATATTGACTTTACAATTACACCATTTGTTTCTAAAGAAAGCATCTTGCCAGCATACTACGtggtactgattttttaaaattaacttatttgggctaaatatatttgtaaattagTTATCATAGATATCACAGCCGTGATTGAAGATGTAAATTAGAAGACTTTTAAAtcggaaaaattttaaaacttttatacctACAGaattgtgtaattttaaaattataaataaaatttgaattatcAACTTTAGTGTGTAACAGGCATTAAGctgac---tttgtca----ttttttaaaactatgatatTTGACTATCCCTATGCAATATACATTGATAAACAGAACa-ctatttattttgaaagtataa----------aaaaataactatttttataagaaatattcattttttaaaactttgtataatgatttagaattttaaaaaaggtgaTAGGCATGT----TATGAGTAAACAAGTCAATTGTTT--TAgag-------ctgtgcatggtg-gtgcatgcctgtaatcctaggaggataata-gtaagttcaagaccagttggagctacatagag----agactctgtctcaaaacaata-aacaa--------------aatttttttt-----ttacattg-tactGTTAAAAGTTTTGTGGGGAAActgtctcagtttttttttttgtttattatatcaTACATATTATATGAATTGAGTAAGTTGttc-------cagaaatataaaaattt----tattaaaacagtATAACCTTAGTGTCAtgctattattataattattttaagacTCTTTTAATACTCTTAAAACATATTCTGCATTAAGGTATGTATAATAGCAATTATGAGTCCAAAATT-GAATTTTCTAGAGTCTGAAATACTTTAAGGACCAtacttgtattattatttta-ttctgaatgAGAATAGTTCTTAAAATTAATCTCT

a score=14496
s chr3           146026722 788 + 160039680 GGGAGACTTTATTTAAATGGACTCTT-----ACACAAA-GGCAAGGCAAACACACCCTTTTGATT----TGGACCTCTTTCACTTGAGTTCGAATAGtttttttttttatttattttttCTAGAAATGCAAGATTCTGTTTTCTACTTTATTAAAAGGAAGTCATTTCATAAATGTGATCGGGGCTTATGAGTAA-AGTCCTCCATTA----ATAGAGTAGCAGAGAGGGCATACAGGGAACA-GGTCGTACATTTGACATTTTAAATTTTCTT---TATCCAGTATTTA-------------------AGCCTCTGG----------CTTGTGTTATCATCATTCTTTCCTGT---------TAAGGCCTCAATATGCATTCAAGCCATCTGTGTTTACCT---CTGTTTTTCCCTAACGGAGACATGGGCGTAGTAAAATCTTGGTA---ACTTCTGTATCCCTACCTACTTCTGTGGAAATTCCTCTTATCAAAGTAAA--CGTCCATGGAGTGGTTAAAATTTCAACTTTAGAAATATACAGTTCATGTTAAGTCCAGGAAGGGAACCCCCTTTCATATCCAGGGTGTTTTGTGTGATGTTACCAGGGCAACCTGTACCTTGTGGAC------TTTCCCCAGCTGCAGATTGTGAACAGCGACCTTTTGTTCTTGACCTTCGTTCAAGAAGTCAGGTGCAGGTTGCCAGCTTGTCTGTGTCCATTCTTGCCTAGCCCACCCCACATCCCCGCCCCACCCCTCCCCCTGTGGCCATGTCAAACTCACTGCAAGCGAGTTTGGGTTGTTAGGTAA-GGGGAGGCTGCTTGTCCAGACTGGCAGATAAGGAACAGCAGT
s HiC_scaffold_1 132489546 814 + 233722169 GAAagcttttattaaaatgtattatttctctACAGAAATGGTAAACAAAATATGTCCTCTTAATTAATTTAAACCTGGTTCACTAGAATA-----------------TACATTTTCTCTCTAAAACTGGGAAAactgatttt--actttattaaaagaaaatattttcatacactTTAATGAACCCTATAGATAAGAGTTCTTCCTTACTAAACAGAATCGCAAAGAAACTACTTTTGGAAAATAGtactacatttaatatttttatttttcttccatttcaagTGTTTGTTTTCAGCAAATGAGAAGCAACCTTTTTAAATACTGTTCTTGGATTGGAATAActtatttatttgataaataataAACACTCAGCATGTTTGTAAGTCATTTTGGGGTAACTGTCCTGTTTTGCT-TCTTGGAG------GTATAGTGCAAGTTTGGTGTTGATTTCAGTATTTATGTGCAGTACTTTGGAAATTCCACTCTTGAAGATAGAACTTTCCCTGGGG--GTTTAAATTCCAACTTTAGAAAAGTACAGTGAATGTCAGATCAAGAGAGGGAAAACCCCTTCACTTT---GACATTTTTCGTGAAAGTTATGAAACAGCATACCTATTGCTTACATTTCTTTCTCACAGCTGCAGATATTGAACAGTGACCCCTTGTTCTTGACCTTTGCTCAAAAAGTGTGATGCAGGTTATGAGCCTATTTGTGTCTCTTCTTGCCTTTTCCTCCCCATAG--CCATCATAAAATTTACTCT---------TTAACCTAAGTGCA----ATTCTTAATCATTAGGTAACTGAGAAAGTGCTTGTCTAAACTGGTAGATAAGAAATGTCAGT

a score=9654
s chr3           146034220 466 + 160039680 TGGATGTATGCATAAGTAAGATTTAAATCCAGTATGCATTTAAGATCTGTATATTATATTGCGAGCAAGAAATAATCAAGCAAGGAGGAAAAGGCAAAAAAAAAATCATATTTTCTATATAAACTGCAGTCAAATAAAAAAACTGGCAAAGTAATCCCTCTTGCAATG-ATTTCTATTATTGATACCCAAATAGCTTTCTCAACATATAAGACATATGCACAATATTTATTTTATTCTGTTCTATAATGTGGTTATTTGAATAGGTAGCTTATT--GTCTCTTAGAGTGTAT-TATTAAAGGCAGGGATTCACTGCACATGATACATCTTTATATTCCTTTCCAAGACAAAGTAAAAGAAGAAATAAATTCGCACTGCATGTGACGGGTGGTTTCCAGTTATTGGTACATTATAGATAAGTACCAGTTATCGAGAATGCACTATGTTTCAGAC-----AAAGGAATTTTATATAt
s HiC_scaffold_1 132500395 430 + 233722169 TGAGTGTAAGCCTAAGTAAAATTTATG-CTAGCA--CATTTAGGATTTGTGTGGTTCAGTGCTGACAAGCAGTAGTTcagtaaaaagaagaag----aaataaatttctgctttgtatagtaatt-----ctaagaaaaaagtatatagtGTAGTCCCCCTTACTACATGTTTCTATTATTTATAGTTTAATACCtacttt----------------------tattaatttgaaaGTGTGTAGTCATAT---TTTTTGAGAACATAGCTTATTTAGGTACATGGATTATGTGTATGAAAAGCAGAGATTTACTGTGT-TTATccttcactgtgatttttttctaga----ataaaacaaaaattaataatatactaTTTGAGA---GAAATTTCTAGTTATTATTACATTATAGGTAAGTACCATTTATTGAGGATCTACTATATTTCAGACTTGTATTAGGAATTTTATATAT

a score=8766
s chr3           146037982 361 + 160039680 CCTCGGGGAGCATCCCGGGTTGGTTTAGCTGGCGTGCGGGTTTCTGTCC------------ACTGTAATCCTCAGCGACAGCTCACAGGCCGTGCAAGGAGTGGACTCACGAGACGGCCTTTTATCTGACCTTCACTGGGAT--TCAATTTCCTGGTGTGGATGCAGCTCAGTTACCTAGTAGCTGCCCTGGCAGTGGCAGCCTAGCAACAACGTAGAGTGTCACCTACCCCTGCCCGTGCTCAGGGGCAGAAGGGCACAGGGAACCGTTAATTATTTACTACGGTGGGTTTGCAAACCTGCGGAGGGCAT---GGCCACCGTCCCCTGCAGTTAATTGCTTTTTCATCTAAAATGCACAGAGAGGATGTGCTTATCT
s HiC_scaffold_1 132504727 354 + 233722169 CTTCAATAAATGTCCAAGGTTGCCTT-GTTGGCATGTGGGATTCTCTTCTGACTGTGTGCAACTGTTTTCCTCT----CAGCTCCTCAACCAT--------TATGTTGAAGGGA-------TAATCCACCCTTCcctgaaatatttaatttccacgtggAGGATCTGGCCA-TTGCATAGACTCTGCCCTGACTATGGCAGCCTAGCAGTAAGGTAGTGCATTGCCTACCCTGCATGGTGCCCAAGGGTAGAAGGGCA-GGGAAGCTGTTAATGATTTACAGAAGAGGACTGGAAAACTGTGGAAGGGCACCTGGACCAGCGTCTACTGGAGTTAATTGCTCTTTCATCTCAAATGAAC--Acaggatgtgttttttt

a score=24974
s chr3           146039269 1713 + 160039680 GGATGCTACCCTCACAGAGCTCAGTAAC---TGAAAGAGCGCGCAGCTGGGGGCGTGCCCATCTCAGTCTGATTCCAGAGTCTCCTTTCCTCTGTTAACCCGACCTGTGAGCTGTGGCTCCGTTCTCTGTCTTCCCTTTGCCCTTTAGTGGGCCTCTCAGTTCTATCC---------TCTACATCCAGGGCCTTCTCATCTTTCACCTTGAACAGGTACCCATGACCCCTTAAGAGGATTTCTTGAACCTCTTAAGAGGATTTCTGTCCAGGTGACTCTCCGTTCTAATCCATTCCTAATCTTCTCACAGAGAAAGTGGGTTGTGCCGACTTCCTGCTTAGCCCTTCTGCTAACCCCCCCTCACAAACTGAAATCAC----CCTCCTTGTGTGGGCGGGGTGATGGGCGTTTCCT-GTGTGGCTCCTTGTTCTCCTGCACCGACTTTTCCTGTGCTGGTTAAATGAGTGCAGTGTCCTTTCACATCTTAATGAAAGCTCTCAGCTCTTTGC-----CAGtgtagtggtttgaatgagaatagcccctacaggctcttatgattgaatagctaggtccctagttggtggaactctttgtgaaggattaggaggcgtggttttgtgggaggaggtgtgccatgccatctcatggttgtgtctcaagaggtgagctctcagctactgctccctgctgcagtgcaatgctcatgaactctaaccccctgaagctgtgagccccaaattcagtgcattctttt---aataagctgccttggGCTAA-gctgtatttttgatgcccttcatcaggtaaaggaggtcttctctgtagctgctaagaacgtgtcattgccccgaacg----ttgtattttagcagatgtttctcc----gtctact--------------------------caatctctgattcacttttctactgttgatcaattttct-tttcctggataaatccccccaggttttccttttgaacccaaaccagtattatccttttgaaaata---cacttctggttttggttcgtgagtattgtgtttagaaCACAGCCCTGCCGCCTGTGCACTGGCTTGGGGGAAGCATTCCTTTTTGGAGAGGTGACCAAAAGCAATGTGATGGGAAGAAACAGCGTTTGATTTCTGCTTCTGCCTGGGTTTGGGGGATCGTCTGCATGACCACAATCTGGGGAGGACACGGTGTCCGCAGCTGTGTGAGACTAGCAGAGGAAATGTATGTCCTTACTGAGGTGGCCACATTCTGCATACAGTTCAATA-ATGCTCAGCATGAGA-CTGAAATAGAT----TTGATAGGATTTAATTGTTTTAATGCCAGTTACATAAAAGTCAGCATTTACGAATAAACCTATATATGATCAGCTTGCTATCTTAC-CTTACATAAAATAAAACGCACACTCAGTAAAGAGAGGGAAGGCCAGCGGGGTCCCCCAGGAGCTGTCTTCGAGAGTCTTTGCTAATGTGAATCCAAGTAGGACTTCTTCTCTGAGACTTTGCTGAGGCCGAGGGCGAAGAGGACAGACTTCTCAAGATCCAGATAGCTCTCGTATTCCAACTTCAGCTCGGCCTCCATTTGCTCTTTTGTCTTTTGATAGATTTTCTAGGTGGGGACAAGCAAGACAGCTCTCTAAGCT--------TAGAAACCAAGAAAGAAGGAGAAGGAGCTGGGGTTTTTCAACAGCTGA-------TGTGGCTGCTCTCTAG---AAGGGGCTTGTGTGAGG--GCAGAGGACAGATGGACAGGAGGGAC
s HiC_scaffold_1 132509243 1541 + 233722169 GGATGCT---CTCATGGAGCTCAGTCTTCTGTCCAAGGAGACACAGATGCATCAGTACTAGTATCCATCTGACTTCACAGTTT---TTCTTCTATCAACCTAAGTTCTAAACTTTGGCAAATTCTTTTATCCTCTCTTCCCCACTAAAACAGCCTTTTACTTCTAGTCACATAAAGCTTTACATAGAGGGCTTTTAAACTCTTCACCTTGAA----TTCTTATTACT-------------------GCCTCCTTACAGGATTTCTG-CCAGGGGACTCTCTTTACTA---CATTCCTTATATTCCTAAAAATAAAGCTGATTGTGTTGCCTTCCTATTTAGACCTTCTATTAATTTGCC---ACAAGCTTAAAGTCTGTGGCTTACTTACTTGGGTG---TATTGGAACTATCCTAGTTCAGATCCATACCCTC-TGCAACa---------------------------cagcttctttttatttttgaa--------ctcatcatcttgcacttaccaggcaagcatttga---------gccactg-------------------agctaaatacccggtccctgcttctttttttgta----------------cctTGTGGATAAACG-ACCCAAtgcaataagaaa----------aagaagatagaacATAGAGACT---------------------------AAGTCTTATTCCAT----------------ATCTCAGAGGAATCCTTTTTAAGTATGATGCTT---GCTAAAGGtttgttttaaatgttgtttGTTAGATAAA--AACTTCTTTCTGCAGTGGCTAAGAATTTATTATTACAatgaatggatgttgaattttatcaattatttctttctgaatCTATTTGACCTTATAATTGCCCTGCTTTGGTCAATCACTGatccattttttacttttaaattaatctTATATTTCCTAGATAAACCAGACTCAGTCTTCAt---------------gtgttattcttttaaaaacaatgtatttcTGGATTTGATTTGCTAATAATTTGTTTATCCTACAGCCCTACTATGTGCACAGTGGTGTAAGGGAAGCA---CTTTTTGGAGAGATGACCAAAAGCTACCTGATAGGTAGGAGCAAAGTTTGATTTCCACTT-TGTCTGGGATTAGG-----------------------TGTGAAGGG---AGtgtctgaagttctgtaccaccataagaaaatgaacactttcttattgaaa--------------ataaaattccataCATGCTCAGTACAAAATCTGAAATAAATCTTATTgctagaatttaaatattttaatagcagTGAAATAAAAACCTGTATTTACAGCTAA-CCTATATATGTTCAGTTTGCTAGTTCAAACTGATAAtgaataaag--------------agagagagaagacacacTGAGTTCTCAAATATCC-TTTCAGATAGTTTTT-CTACATCATTTCCATATGTGATGTCT---CTGAGGCTTTGGCTAGGCCAAGACCGATAAGGGTGATTTTTTCCAGTTCCAAATAACTCTCGTAGTCCATTTTTAATTCAGCTTCCATTTGTTCTTTTGACTTGTGGTGTGTTTtcta--tgggaaaaaagaagacatCCTTATAAGTTGCTGACAGTTAAAATTACCAAAGCATAAGAAGGGGC----ACTTTTAGACAGTTAACAATAGCTGCTGCTGCTATCTAGCACAAGAGGCCTGTCTGAGGCACCAGAGAGCTGGAGAATGGAAAAGAC

a score=32153
s chr3           146041363 2774 + 160039680 GTGCTTAGAC--TCGTAGCAGTGGTGGATAAACTGCTGGTGTAG------------AGA--GTCTCTCGTCAGCGCACTTACACCAGTGTTTGTAGGTGTCCACAAGAGCAAAGCTAA-ACCAATCCGTGTGCGGCCGTGGGACTAGACAGAGAGTTAATTTACTGGGATCTCCGTATCCTTTGTCGCCACCAATGGTGGCTTTTGAAATGAGCCCTGT-GCTTTGATTGTGCCAGTTTGTATCTAT--TAATAGGTGAAGT-------------GCGCAGAATGCCACAGTAT--CCACATGTTGGCACTTCTCATGGAGAACAGGGCTCTCACTTGGAAGTTTACTTTGGAGGTCACCATGTGCTTGTTGGCCATGAAGGGACCACAGGTAGGGGCAGTTAGGAAACTGC-GGTGACAAAGG-GGCGGGGCAGGGGTGGGGCAAGCCTACGAGAAACAGAAATCCAGACCTGAGAGAC----TCGGATGAGACCTCGAGAAGAAC--GGTTTATAGAGTATCTAAAAGCCCCCAAGTCCAGTGGATGATAGAGGGC---CTGACCCAC----------------AGAGAGAGGCTGAGGAG-AGGGGAGCGGGGCCTGTGGAGTGTCATGTCCCTCTTCTGGCTGGGTGTAAG--------ACGGATGTGTTCCCCACTTCTCTGTCTCAGGGTCACAGCACCACCCAT----------CACACCTTCCCCCCCCCCCCGACGTCTATCAGCTGCTGTG-TTGCTGTAGCAACTGCTTGATGGCAGACGGTCAc-----------attatctgaaagccttctcgcaatcaccagaggtggctgttggtgttcccattttccagatgggacgaccaaagctcagccaagatggaagctttgctccagatcT---------------------GTGGGATTTCAGCCCATGTTTTATCCTCTTTGTTTGGTCCTTTTCGTATGGCGAGTTTCAGTACATCACTCGCCAGACATAAGAACTCCACACAACGCAAGAATTCAT-CTGTGAGTCTCTGTATCTATACTAAAGGACTTAGGAAATGCAGTCAATTAGAGAAAGAGGACTTGGACAGAATCTCATTATATATcagggctggtgacatggctccgtgcatacggtgccaagcctgatgacctgacttac----ggataggaggacactgactcccgtaaattaccctctcaactccatatgtgagctgtgcacgttcttactacccggaacacacccccacaTGATGAGCAGACAGAAATGTGATAGAATCTCACTGTGTGCGCGACAGGTGGGTCTCACTCACGGTCTTGTAGGATTCTGATGCCCCCGGAAGAAAGGCATAAGCCTAAGGGAGCACACAGGACTCTCGTGGGATGGGCC---CCAAGGCACTGCCACTGCCACCAAGTGGGAGAGAGAGGATGGCCACTCTCATCCGGAGAGTTCACTCACCGCTTTCTTCTTCACCAGTTCCAGGGCCATATCTATCTTTTCTTGCTCACGGATTTCTTTGCGCTGCTGGACGTATTCCAGGTGTCTGACTTCTCTCTCAAAGTAGTAGTTCACACTCGATACCTGTCAGAAACAAGGGCCCACGGTGAGCTCAGCCCAGAGGGAcgcccgcccgcccgcccgcccgTGGCCTTTACAAGGTTCTGTTCCAATGGCTGTTGCTCTGCAACTATGATTTCCACACATCATCTCCCTCAGTCGCCTGATGACACCAACCACCTTCTTAACCATAGTGGAAGGATAATGACAGAAAGCAACTCATCCTCCAGGCcagtggtcctcagccttcctatcgctgcagccctccaatcctcttcctcacgttgtggtgaccccccaaccatatggttattttcattgtgacttattttcatgactgtaatattgctactgttgtgaatcataatgtaaatatcagtgttttctgatagtctgtgaaagggtccttagacctccatgggagttacagcccCACCCCCACCCCCAGGGGGGGCCTTGAGAGCTTTAGGTGACTGTGGTTTGAAGGTCGTTCATGCTTCTGTGGTTACATTCAGGTCCCTGCGACTTGCAGGTCCCTAGGACAGGAACAGTTATAGCTGGGAGGAGAGAACTG----------TAAAACCCTGCCGTTTTTTATAATAGAAATAT--AGAAATTTGTTCTCCCCGCCCCTTTTCCTTCTTACTTTAGAGACTGAAGTTGCATACCCTCAACTGAACATGGTAAACTCAGATAAAGATATTTATGGAGACTTGTGAGTGGCAACAAAGTCTTCAATGGCTGAACCATCTTTACAGCCCCTTTAAAGGGACTAGAGGCAAAGCTGAATT--CTGGTCCCCAGAGGACTTGGCCCTGGGTCCTACGGACATTAGCAGAGAAACCATTATCGATGCTCCTGGGGAAGGAAGGCAGTCCAGGCCCGCCTGATGCCTAGCCGGAGCTGGACCGGCGCTGGGGCTCGCAGCAGACTGCAGTCTGTATAAGCCTGTATAAGTCTGTATATTTAA-GCGGCGTGGACATTTATGTTTTTCTACTCTTTGGTCCCTTTAAGCCCCCATTCTCGCTCGGTGTTGCTCCGAATGCTTGGGTGGTCTGGGTA-AGGTTGGGGCAAGCAGAGTATTGCCAGTTCAGATGGGGGGCTGGCAATGTGTTGGG--GCTGGGGAGGATGACCGGGAGGTGTATG-AATAGTCAACT---------------------------------GAGCTAAAACTCGGCTAGCGGTTGAAAATACC-------------GACTCCCCGTGTCAGTTCTCCGCCCAGTCTGCCCTTCATCCCCTTGACTTCCTTCCCATCTCCTGTTTGGTTATTTTCCTTAGCATCAAACTATCTAATTCATATGATTAAAACATACTCttttatt
s HiC_scaffold_1 132511604 2411 + 233722169 GTACTTAAACACTTATAACAACTGTGGATAA-TTGCTGGCATAGGCCAAGAATGACAGATTATCTCCTGCCACAGAATTTCCATCAATGTTTATAAGTATGCAAAAGGACAAAGCCAAGACCAATTTGTTTGTAGcagtggaatgcaatgaaaagtTAATTAATTGGGATTCTTTTATACTTTGTCACCACTAAACAATGCTTTTGAGATGAGTCCCATTGCGTTTATTGAGCTAATTAGTATCTATAATAAGGGGTAATGTTAATCTATTTGTGGTGCAG--TGTTACAATATTTCCATATGCTGGTGCTTTTAATGAAGACCTGGGGTCTCATGTGAATAATTATGTTAGAAGATGCTCTGTATTTG---GCTATAAGGAGACTACAGATGGGATTAGCAATGAAATTATTGGTGGCAAAAATGGCAAGGGAGGGCATGAGCAA----AAGAGAGATAGAAACATAAAAT---GAGACGATGTCAAGTGAGA----GAGAAGACCTAAATCTACAGAATATTTAAGAGCCCCAAAGTCCTGTGGGTAAAGGAAGACTAACAAAGCCATCAAATTTATATGAAATAGAGAGAGGCTGAGAAACAGGAAGGTGAAGACTTTAGATCTTTAAGTTCTCTTTT--GCTGGGGTTATGTGTCCTATACCAAATTGCCCTCTATTTTTAAGTATCACAGCTCTGGAATAACATATGATAGTAAAACTCATCTTTTTTACCAATTTATCATCTATCTATTGTTATGATTATACTAGCTCCCATTTGATGTCAGTCAATTATTTGTCAAGTGACttaactgaaacctttacaacaATCATCCAAAGTGGTTATCAGt-ttcccattttccagatgaggcAACTAAAGCTTGGCCAACATGAGAGCACCGCGCCCAACCCCATAGCTGCTAAGTGGCAGAGGTCAGATTTGAACCCACATGTCCTGCTATCT-------CCTTT----------------AATGCATTCTTCGCCAAATATTAAGATTCTatgtaatgaaaacattaaaattttgagtCATTATATTTGTACTATA----TT------TGAATTAAGCTACAGAAA-----CTTGAATGGAATATGACTA----------------------------------AGTGTCCAACTGGTAGTTCTCATTTATTATGagataggaa-------atttttaaaaaatgccctc--AACTC----------------------TTATTA----GACCA----------------------AGAAA--------------------------------------------------------------ATGTTGCAAAAAGCACAGCAT--TCCTACAGAAGC------------TGTGGAATAAACCAAACTTACATAATTTCACTG-------GTAGGAAAAAGAAG---TCAACTTCCATTTTTGAA----ACttacatgttttctcttttccatttctaactccatttctttcttttcttgttcacgAATACTTCTGCGCTGTTCTACATATTCCAGGTGCTTGACTTCTCTTTCAAAGTAATAGTTAACACTTGATACCTGTTAGAAATAAAAGTCCAAGGCAAAGTTAACCCTGGGAAA----------------CCCCTGTGGTCTTCTCAAGGCCCTGTTAGACTTTCTGT-----TGCAA--GTGGGTTACCTGTCTCATCTACC-----CTCCTGAT------------CCTCCTGATCAT-----------------------TACCTAATCATTTA-------------------------------------CCATTCTTTCTAATCAAGAGGTAG------------------------------GTGATTTATTTTGGTG-------TATTG-TAC--TTCTAATCCTTCAGGTGAGT--------------GTAATTTG-GAAATGGTGC--------CCATAGG---------------CCCACTACCAGAGCGG---CTGGATCCATTAGGAGGTTG-----------------------CTGTACTTAGATTTATGCCCCTGTGACTTGAAGATGTCTAGAAAAGGAGTAG----GATTTGAAGGAGAGAcctgaaagaaacaacaacacCCTGTAG--TTTTGTAGTAGAAACATTCAGGAA-TTGCTTTAtcccattttcttccttctcactTCTAAGACTGAGG----GAAACTTCAAGTCACCA--------------------ATTT---GAAACTGGAAAAGTCCACTGAGGACTTCAATGG---------------AGGCCC--TAAAGTGACTGGA-GCAGAACTGAAATGCCAGTTCCCTGGAGGgcttagcagggaggcaaaaGAACAGAAGCCCAAAGTC--TGAAGAGTGCTC--GGGGAAGGGAGCTTG--AGGGAGTGCTTGCTGCCT-GCCAGTAATTGGCTGATGTTGGGGCTTGCAGCAGATGGC--------------------AACCTATATATTTAATGTTGGctgtaca--tatatatttctaGCCATTGATCTTTGTATAACCTCATT----ATTGACTTTGCTT--AATG----------GTGGGTACAGGGTGGT----GCAGAATACTGCCATTTCAGATGTGCAGCCAGCAATATATTAAGTAGAGGAGGAGTATGA----AAGATGCATATAACTGTCAGCTGGGCTCTCAGGGAAAAATAACACTGACATGATAGAGCTAAAAAGTAGTTTCAACCTGAAAATAACCTTTTATGATTATAAATCTCCAAATCAGTTCTGT-CACAGTCTAGGCTTCATTTACTTGGCTTCCTTTCCATCTCATGGTTGGGTTTGTTCC-TAACTTCAGACTATTTAACTTATGTGACAGAagtgtattcttttatt

a score=14371
s chr3           146044741 449 + 160039680 ATAAATCAACAAGTGTACATTTTAAAAA-------AGAAACATCCCAGCAACAT---------TAAACTTGCAAAGTTGCAACTTAACTGACCTCATTCAAGGAAGGGTGACTTAAGGTCCAAGGGATTTCTAGGATGTGCAGTGTTCCGTAATAGTCAGCTACGGCTATAAACTGCTGCTTAGCTGAAAGATTGGA------AAGAAAGAAAGAACGTGTGTGTGGGGGAACTCAACAAAGGGAAAAATCATCTCAAGAGGTTAGACACAAAATTCCGTCTAGTTTTTGTGGTTTCCGGGAAGGCCTGCTGCAATTCCCACGCCCATGCCCCGGGCAA-GCCGTCAGATGCTCAGGACTGGAAC--------------CAGCCATTCTTTCCAGCTGATGAGATGAGAG-TCAGACTCTGAGTCTCCA-CATCCTCC--ACCACCTC--GCCTTGCTCTCCGGATGTCTGTATAAGGAGATGGACTGACAG
s HiC_scaffold_1 132514042 474 + 233722169 ATAAGGCAAAAatgctgccttttaaaaatattttaagagatgcCTTGCCAATATCTGGTTATGTAAATCCTCAAAGTCAAAAGTTA-CTAACCTCATTGGTAGAAGGGTGACTTAATGTCCAAGGAATTTCTAATATATGCAGTGTTCCATAATAATCAGCTATGGCTATAAACTGCTGCttagctgaaaaataaaaaaaattaaaaaaaaaagaaaa-------aagaaatttcagcaaACAG-AATATTATCTTAAGAGGTTAAACAt-gaactgtgttttg-ttttgtggtttccCAAAGGATTTGCTGCGGTTACAACACTCTT------GGCAACTTCATCAGATGTTCATGATTGGACCAAATAAACATGTAAAAGACATTTTTTCCAGTTGATGAGATCAAAGCTAAGCCTCTGGGCCTTTGTTAGCCTCCCTGCCACCTCCAATCTTGCTTTTCTCATGTCTA-ATAAGGAATGTGGCTGATGG

a score=17908
s chr3           146045379 1362 + 160039680 ATGTTTCTCT-TCTCTCATTTTCAGGAAGGTCTGGTTCAAATTGCTGAGTCCTACACTCAGAACCCC-AAAGGTACAAAGTCAGCCTTTTGTACCAAAGATAGGATAACATACTTTGGCTGTGCCTCACGGCTAGCCGGAAGCCGCACTCAGACATTCTAGAGACCCTGAAGCCCGAGTGTCTGGGTGGGGTGTTTCTGAGAAAAATCGTAAGAGTCAATCTTGTATCTATGGA-CTTTAGGAAACAAAAGGAAACTTCTTCCAGTAAAGGCAGACATACAGGAGCTACACAGAAAATACTAATTGGgccgggcag---tggtggcgca------------cgcctttaat--------cccagcacttgggagg----------------------------------cagagac----------aggtggat--ttctgagttcgaggccagtctgatatacagagtgagttccaggacagcca---gggctacacagagacaccctatctcaaaaaaccaaaaAAAGAAAAAAGAAAAAGAAAAGAAA-ATACTAATTGGGC---------CAAACGGGGTGTGTGTGTGTGAGAGAGAGAGAACCCTAAATAAAAAACAAAGGAAATAAATTAGTTTTCTGT----------------AGACTCATCCTTGAATTTACGCTTGTTTGGTAGTATACTGCTATTTGTACACATTTAAGTCAGA-----GTCTAAGGCTTACATAGATACATAACCCTAGAGAACAATGT----------GCTCCCGTGAAGCGGGTTGCTTGTGGGTGT--GGCCC----GTGCACGGATCACTAAAGTGCACAATAGTTTAAAAACGTGGCAAAGAAACAGAACTCAATATTTCTGGAAAAGAAACATCCCCGAAGCAGCACAGGTTTAGGACCACTCTGTCAGGGATGGA------------------------CGCTTTCATCCCGTGGTTCCAAGTCAGCCTCGGTCTGACCTTACCAGCAGTCTGGGGAATCACG----GCTAATGAACTGGATCAC----------------GAGGGGCACG---------------Tgaa---gggaagcaagggtgaagggaaaggat-----gagaatgttgt--------tgaagaaa------caaaggttagagtggagagcaggagagagagggagggagagaaaggagacaggaggaggggaggaaggggaag------tggggggaaACACAGGAGGTTTTCCAGGTGAACGTCAGAGCATTTCTAGGTCACCCAAA--CACATTGCTCCACGGGCTAGAGTGAACATACAGGAGAAGGTCCAGGGTTTGATGTAGGTGATCATGGTGATGCAGATATTCTGGGACTGGGCTGGCTCGTGAGTTTTCTCCAGGAGGTCCCAGATATCGACATTTCCGTCCTCTCGGCCGATGTAGAACACTCCAGGCCTCGTCAGGGACCAGTGTCCTGCCGTGTACCTTTTCGGTCCGCAGCACGTTTGAAGGAGCGGTCCCG--TCTAAACACAAGTTCAAAAGACACATTGAAA
s HiC_scaffold_1 132515316 1509 + 233722169 atatttttctctctctcattttca---aACTCTGGTTCGAACTGTGGAATCTGAGACTCATAACCTCTACAGGTGCAGAAGTAATGTTTTGtaacaaagatgagaaaatacacGTTGG-TGACACACATGACTAAGCAGTAACTAGACTGTGACACCCTACAGATTCTAAAGATTGAGTTTCCAAATCCACTGCT-------------GTGTGAGAGAAGGATATGTCTATAAATctttaggggaaaaaaggaaagttcATTTAGGGAAGATTATCATATGAAACTTGCACAGAAAGGACTACTTGGGTGAAATAGAAATGTTAgagtaaaggaaataaattacTTTTCATAGACATATCCCTGAATTTATGATTGCATTGTTATATAATACTTTTCTCCTGCTAAATCCAAAGATTAAACTTTATAGATAGATAATCCTGGAAAATTATTCAATCTTATGAAGAGAATTGCTT--GATATAGCCATGGGAGAAACACAAAAGTGATGTAATGGAACATATGACTTAAAATGAAAagctaaagaaacaaaacattttatctggaaaagcaacagcaaaaaaataGTGAAGATTT-----AGGGATCAACCTATC---AGACCAGGGGAAGATAACCAGGATTCTGTCATACATTTCAGAGTCAGACTCTCAACTGATTT----CTTGTCT-----------------TAGAAATCTTTGAATCAGAACAGTGAGAGAAGCTCAGATTG-TATACAAGATTTGAGAACAAGATAGAggaaaaagcagaggaaaaatagGGAGGGTAAGGATGTTTGGCCCTCTAGTGTGAGAGATGTAAAAG-GAGagagaatggagaaa------gaaagaaaagaggcctttattgaaGGCACGGGAGGGCTGCCAAAGAGACACA-----AGCACC-CTccggaagaaacaggaaaaaggaaaaaaaaaaaaaactgcgcttttatt---tgattttggaaGGGGGTGGAGTTGAA-TAGCCAGTAGAATGAGGAATGACGTATTGACAATTGATTGGAGCGTTGGTACCGCAAAAAGTGAGAGGCTTGACTTTTGGGGTCAGAGGAATGTGGAAGGCAGTGCTGAAGGGAGGCGCTCTCCAGCGCATGTTGACTTGCACATGAGAAAAACTCCTCGAAGGGAAGAttggaaaagaggagagaaaagatgaGATAGCAAAGAAGGAGATGAGAAACATGAGATGGAAAAAACCCTGAGAAAAAACATCAGAGGCTTTCCCAATGTATGTGCAAATACTCCCAAACCATCCAAAATTACTTAGCTCATTTAATTAGAATGAACATACCAGAAAAGGTCCAAGGTTCGATGTAGGTGATCATAGTTATGCAAATATTTTGTGACTGGGCTGGTTCGTGGGTTTTTTCCAGAAGATCCCAGACATCAATATATCCATCTTCTCTGCCAATATAGAAAACGCCGGGCCGTGTCAGGGACCAGTGCCCTGCAGTGTACCTTTTTGCAGCACAGCATGTCTGAAGGAGGGGTCCAGACTTTGAACAAAATTGTAAAAAGGACAACTAAA

a score=34416
s chr3           146047286 2341 + 160039680 GTTTGCTGATGAAGACTTAAGCAGCTTTCAGCGTTACTCAATGGCACCCTGTGTACAAGCAATTGACACACGTT---------TCTTTTTAAAATTATTTGTATAAATTAGGGATCT-GGAGGGCGGCTGGCTGTTGTTTGGTGAAAGAATATGTACGCCCCAGTTGTGA--TCCACACATGCTCTCTGCCTCTGTCTCCCTCCCTCCC---------TCCAGGTTCTTCATATTCTCATTATTTCTCACCGAAGGGGCATAGTAATTTAGATTTTCTCCCCAAAAGATCTG-----------CCCCCGCTTCGCTGGATTTAATTGTGTGTGTGTGTGTGTGTTTTCCAGTATTTTT-GTTTGTTTATCTTGGCAGACTGGCGCCTATCTAGCAGGACT-------------------GGTCTTAATCCTG----ACGAAGTCCTA------------------CTGCAACC---------CTGGGTCCTCAGTCTACGAG-----------TGAACCTGCCAACATGTTCCTGGTGCAGAAGAAAAGTGGACAGGCTGG---GCAACCCCTGGACTTCGTCTAGTCACCAGACTCC-ATCTTCAGAACCTCAAGGGGCGG----AGTTCAAGTCAGATGACCCGCCCACAGTAGGCATTTCCAAGAAAAACTGTGGTTGGGCTTCAGAGAACAGGGACCCTGCTGTGTTCACGTCCCCCCT-GGAAAGGAGGACGCGTGGTTGTGTTTTCAGA-GCTTTCCAGTGCTTCTGCTGACAAGCTGCAG-CCAGGCCGTCTGTTCTCGTTTCTCTATAAAGTGCCCCATAGGCAAAGACCT---GGAACAGCCGCAGGTTCCTGTTGTCTTTCTCAGCGGCAAGGACACACCCACCTGCTCC---GCTCTGTGGCTACTTACCATGACCTCCTCCTTCCAGATAGCCACATTCCATCCCCCAACAGTGAGGACGATGTCATTGAAGAAAGGCGACCTCTGGATGGTGTGGACAGCCCCATCGTGGACGGTGTAGAGGCTCACAGGTTTCTTGGCTGTGGATGTGGACAAGGCCCAGTTTGGGTGCATAATCTGCCATAG-----------------------------------AAACTTGCCCCCAGGGACACTTTTCCAGACCCTCTGCCATGCCATGCCCTGTTCTCCTTCATTCACCTGTTTATAAGTCCAGCATGGGAGTT-acaaatatctgtggattgtttatatgtgcgaaggtcttcatgtgtgtggctagacaacggggacctagaagcccgacacggccttgccctcaagtggctggcaatctagtgggaaggaaagatacccagtaaatacatCTCTCAGGGAGGAATTGAAACCCACCTATGTGCAGACCA-----AAGAAAAGCCACTACAAGGAAGAGGGACAGGGGACACTCCTAACTTAGACTGAATCG--------------TCAGGGGAGTAATCATTTAGGTCTGAGTGTAGCTGAGCCTGGGAAGTTTCTGGTACCGAGGA--GCAGTGCACATAGAAGGATGCCCTGAAGTCTGGGA-----AGAGGACCAGTCAGGGCCTCTGTCCTTGTGGTAGCTGGAACTACAGGCGTGAGATGTGA----ACCAGGGCCTGGAAGGAT-CAGACCATGGAGGTCCCTGTCGGGAAAGGAGTTCAGACCA-AGCCCACAGCGCAATGTCTTCTTAGGAGTCTAGTTCAGACCCac------------------tgatgattccaaaggtactctgacttgttatggggagaatgggtgggaggcaggtggaagcaaggtgggaaccccagtgagga----ttcctgtgg------tcctataagt-----------------------gggagagacagtggt---------------------------------gacttgaatgaa-gtccagtag--tggaatagataat-gaggaCATATTTGTGAACCAAGGTATGGGAACAGCGTGGCCAGGCAGAGTGAGTGGCATGAAGTGC---TAAGAACAGCCTGGTTTCTGACGAAGAGCAGCTGGCTTGATGCAACTTCC----TTAGCAGCTGAGAAGGTAAAGTTCAGACCATGAGACCAGAGCTCTCCTGGGCCTCT-GCCCCAGCCCCAGGGTCTTCCTGCCTCTCTGCTCTCTGCA--CAGAGCACACCAGGACTGGAGCTGGGGGGTTTCCTTCCGTCTGCCACGGCTGGCTGATGACCTGAATGAATGCTCATTCTCT---------ACTCCAGACTCCAGGGACGGCCACCGAAGTGTATGCTGGTGGGGCCGAAGGTGCAGTGTCTCT-----AGGCTACAACCACAAACTTATTCTGTACCTCGCCTCTTTAAT-GCTATGTGAGGGCTGA--ATCGCCGCCTGCCCAAATGCTGGTGGGATATTAAGGAGAACGAGATCTCTTTACAT-TTGTAAGGAaattataaagtagggctttgaaaggctttgggtcca-tccacattcaca-caacatcacttgccacagaagagaggtgggagca--------tccatggatgaatggtaaacaca-----atgtggtatagatatgacacgggatacaattGAAC
s HiC_scaffold_1 132517866 2518 + 233722169 GCTTGCTAAGGGACATGTAAGTGATTCCCAGTGTT--TAAATGACGGATT-TGTACAAATA-TTCACtcatcttaaaattttcttttatttaaagtacttgtataagttaaaaattttagaagGTGA---ACTATT-------------ATATATATGTTCTCGCTAtgaaattcacacacacacacacacacacacacacacacacacatacaatgtTTCCAGCTTTTATTACTCTCAA-ATTTCTTATCAAAAGGACAAATCACTTTAAATT--ACCACAAAATGTTCTGATTTCCTTATCCTCTTGTTTCACTGGATTT-----------------------TTATAGTCTTTTTAGTTTGG-------GGCAGGTTGGCAT-TATCTGCCTGGACCTATCCTCTTTCCTATCTGGGCTCTTGTTCCTGCCTTACTTGGTCCCATGTATGTCTCTGGACGAGCTGTGATCTCCTGGTGACAGACCCCTCACTCTACGCACTCCTAGTTTCTGACTTTGTCAATGAGTTCTTAATGCAGAA-AAAAGCATAAGGtccatcatttattttttggaCTTTATTCCATAATTAGGATCCTATCTT--GTATTTTGAAGAAAGGCAAAAACATAAGTTGAGCCAACTTCGTACATTATGTATTTCCAAGGAAAG--ATTGCTATGTTTTGGAGAACCAGGCACTTGCAATGTTATTTCCTTCCCtcaggaaaaaaaccaaatgactGTGTTTTCAAAAGACTTACAGTGAACCTGCTGACAAGCTGGAGTCCAGGCCATCTGTTCTCATTTCTCTAAAAAGTACCTCAAAGGCACTCTCATTTCAGAACAAGCCATTGTTCCTACTCTCTTTCTCAATAACAAAGGACCATATGCCCACTCCCTCACTTGCAGACTACTTACCATAACACCTTCTTTCCAGATGGCCACATTCCACCCCCCAACGGTGAGGATAATGTCATTGTAAAAAGGTGATCTCTGGACAGTGTGAACAGGTCCATCATGGACGGAATAGAGGCTCTTTGGTTTCTTTGCTAGTGGAATGGAAAATGCCATTTTT-------TAATCTGTCAAGGGATAgctgttcctttttctttaatgGAGAGTCAGAGAACTTCCCATGAAGGCTACTTTTAAAGATCAGAGGAC-----------------TATTCATGCTGttgttcattaattcattcagtgAGTCAATAAATATCTGCAGATTGCCTATGTGTGCCAAGTACTATAGAAGCCTGGAAAAATAATGG----CTAGAAAGCAAACATGATCTTGTCCTTATGGAGCTTACAACTGAGTGGAAAAGACAAATACTCAATAAACAAATCATAGACTATGCAATTAAAG-----TGGTATAAAGAatattatgaaatgaaaatattacaagaaagaaaaacaagcagtgTTCATAATTTAGACTGAATGGTAGGAAAAGGTGTCTCTGAAGAGGAGTTATTCAGGCCTGAATGCAACTGGGCATGAGGAAATTTTggtgaggaggagggaaggacacATGCAATAGTCCTCGGTATCTTTGTACCCTTGAAGAAGCAAATAGAAC-----------TCGAATCTGTGAATCCCAGTATGAGACATGAAATGAATAGGATCCAGAAGGGTCCAGACTACACAAGATCTTGTAAG--AAAGAGTTTAGTTCACAGCCCA-AGTGTAGTGTGTTTCAGCGAGTCC--TTTAGGCCTACAGAGTGAGACAGTTTGATTGACACTTCCAAAGGTTCTCTGGC-TGCTGCTAGGGAAATGaatgcagtgatggtgaaccc---ttTAGAACTCTGATACAGACAGCTTGCTGTGGCACCCATGCCATAGGTTCGTCACCACTGCATTACACGCAGGCAGAAGCAGAGGCGGGCACTGTAGGGGACTGTTCCAGCCCAAGTGGGGCTTGAGTTAAGGTGCAGTGGAAAGGAGCAAACAATCAAGAAAATACTTGTGAGCTGGGATGTAGAGACAGCTTGACTAGGAAGAGCGAGAGG--TGATGTGTAGAAAATAACAGCCATATTTCTGAC-CAGAGCAACTAGCACCATGCAGATCCCAGGTGTTGCATCTGGGAAGATTTAAAGCAGTGTACGA------AGGTCTCTTTAGTCCCTAGGTCAGGTTCCAGGCCTTTTCTGCTGCTCTGGTTTCTTCAGCCAGAGTTTA--AGGGTGTCTACTTGGGTTTCCTCTTCC-----TCAGGCCTGGCTGCAGAGCTAGATG-CTCCACCCTCTCTGTTGCTCACACCCACAAGTCCAGGAACGACCATAAAAA-ATATTCTTCTCAAAACTAAACTACAGTCTGGCTGATTGATACTAAAACCACTAAC--ATTCTGAATTTCATCATATAAATGGCTATGTGAGGACCAGACATCCCATATTCCCAGAACACCAATGGGACAGTAAGCTGAAAAATACCTA-TTACATCTTGTAAGAAGCTTGTAAGGTAGGGTTTTGGTAAGGTAGCTATCCACCCCAcgttcacagcagcattatttgTAAAAACCAAAAAGTGGAAGCAACTCAAGTCCCCCTGATggatgatgaatggataaacatgTGATATCCACATACAGTGGAATATTGTTCAGc

a score=7369
s chr3           146051589 374 + 160039680 TCTTTTCCTTTGGAAGACCTGCGTGACTGTCAACAATGAATGGGGCTGTCCCTAAGTTATTAGATGGAGTGCCAGAGCCTCCAGGCTGCGTTGTTAAAAGAAAATTAT-AATAAACCAGAAGGCA------CAGA--------TTGGCGGCAGACT-------GCCTGGGCTCAAAG---GCTGCCACCGATGCC------CAAGGCAGTGatcccacagggctgctacg------acaacatgagtttatccgt---------gagaagcacttggcacagtgcccagTGTGGCTGTGTGCTGGTTGTACAGTTTAAGGGTCTACTACATGGAACAGTTATGTCA--------------ACCTTCGCCATTCAGATCTGTGCTTCTTGGCTTGCCTCTTAGGTCATGTGGAA---ATATTTGATGTGGCTTCCCCT
s HiC_scaffold_1 132521555 432 + 233722169 ttttgtcctttgaAACACCTGTGAGCCGTTCAACAATGAATGCAGCTGTCCATAAGTTACAAAATGAAGCAACAGTGCCTCTAGGCCA-GGTGTTATATAGCAATTACAAATCAACAAAAAGGCAGCTTTCCAGAGTCCTTATCTAATGCAAGATTCAATCCAGTAGGGTTTTTAAGAGCACAGACACTGAGGATAGGCTGCATGGTAGCAACTACAAAGAGCTACTTTGAGGATCACAACGTGagctaaaacatacaaagtacaCAAAGTACTTGGAAGAATGTCCAGCACATC--AGTGCTGATGTGAGGATTTAAGAGTAGACTACATGAAATAATTATGTCACTTGTTATGTCACTATGTTGGCTTTCAAAGTCTGAatttc-tggctt-tctctctgaTCATCTGGAAATGATGTTTGATTTGGCCTTCTTT

a score=15762
s chr3           146055428 650 + 160039680 AAGGAACTTTCAAACGTGAGTCTACGAGATATCTAAGTTAAAAATCTTAAATACAAAGGAACATATTCAAACATGAAAATGTGTA------------CAAACAGGAGACA---GTAGAGGTCATACAACACGACAGGGGAGTGT-----------AACTTAAAAACCCGACAGTTCCCTTTTACCTCTGTTCCCACGAAGAACTTCGTGCAGAAGTCCTCTATCGGCTTGAGGATATTGGCTATCCCTGCTTCCAGGTTTTGGTAGGGGTTAATTTCTGACGTCTTCACCATCTTGATCTGACTTAACATCTTGTCTCTCAGAATAATATGAATGGACGACGTACCTGTTTAGAGACAGAAACAGATCTTTAAAAACACACA----TTGTATTTTCTGTGGCTTTCCACGCATATCTGTTCCACTCATTCCTTTCCC------------------------------------------AATGTGGCAATGACCCTCATC--TTTCTCAGAC-----CACCACCAACTATATCATAATGTATTTTACACATTAAAGCCAAGGTCGAAATACCAGGACTTTTCTTCCAAATATTTGATATCATTTTATTTTAGAGCAAAGTTTTTCTGATGGAC----AATTTATAAATATTGTT-----AAGCTTTGGAGAATGGAGAAAAAAGCAAATTAAATGACAAATATATTTAACGCCACGGTTTTCAAAGATAGGTTTCTCT
s HiC_scaffold_1 132525692 705 + 233722169 aatgaatatttaaatgtgaATCTATAAGGCATA-AATTTACAAATTTGAAGTGCAAACAAGCACATTAAAACATGACATTGTATGAGTATTGTAAATCATAGAGCAAACATGTGTAGTGGGGTTATAATAATATAGGATGATGTTAttgaacattaattttaaaagcagataGTATAATTT-ACCTCTGTTCCCACAAAGAACTTGGTGCAGAAGTCATCAATTGGCTTGAGAAGATTGGCTAATCCAGCTTCCAGATTGTGGTACAGGTTCACTTCTG---------TTACTTTGGTCTGATCTAGCAGTTTGTCTTTCAGAGAAGAATGGATAGAaaaagtacatgtttacagtTAG----AGGCCTTTTAAAATAGAGATAGTTTGTATTTTATGTCGCTTGCCACACACATCTACTCACATCTGTCCTTTCCCTTCCTAATATGGCTGCCATACATACAAGTACTTTTAGACTCTAATTTAGCAGTagaccttttccttttttcaggcAAAAATATCAATGACTGTACCATACTATA--TAATGTATTACAGATAAGACT------------TGTTTATTGAAACAATTTGatatca-ttcattttaaaataaactacttTTTAAGAATCTAAAATTAATGAACATTATTTGTTGAAgctttagaaaatag---aaaaagcatgAGAAGAACAAAAAGCACCTATTATTATGTCTTCTAGAGATAAGTATTACT

a score=10794
s chr3           146062224 1367 + 160039680 TTGTAATAGACAAAGGTGCTTTAGTTACCTTGTATTTTGCAAAGAAAAGGGTCTTCGCCCAGGCTCAGCTTGGTTGGACAGTGGTCTAAACTTGTATCACCCTTAGACAGTTTTAACTT-TTGGAAGAAAATAAAAGAAAGACATATTCTTAGAAAATCCTTGGATTTTTTTTTTTTTTTTGGCCTGTCCCTCTGCTTCTAGTTCACTAGAAACTCACCTTGTATCACTACCCCCCCCCCCTGCCTTTAACCGAGTTGTTTTTCCCCATGAA-------AAACACCCAATT-----CTTATTTCTATAACCAAGCTACCAAGGGAAGCCTGCCTGGGGACATGTTTCCCAACCCCAAAG----TGCTATTTTCTTTCTTTATGTGTT--TTATATTGTATTCC----AAAACTCATCTTCA-TGAGTTGCAGCATAAGATAATG---------AACAAGGGGGCTGCT-----------------------AGCCTTCTTCCCTA---AGTTTTTCTTAAAGGTAAAGATAAAGGCTCAGGAAGGGACCTTGCTTTTAACTGGATGGCTGCAGGTCCCATCAGGGACATACTTTACCTTAAT----GACAATTGTGGCCTT----------GTGCCTGCGTCATGTAT-----------------TCCTGGTTAGAATGATAAACGGCCCTT---------AGGTTTCTTCCCCTATGCCCGC--TCCTCAG-------TCTTCTCCTTCTGGAT----------ATTTGTTTACCCACTTGCCATGCAATTA-TTCTTTGGTACATTTACGTA-----TTCAT-------TTGTTTTGCT---------TCAACTATTCACAACTC--------------AATTAGACTTCCTGGGCCCACCCGAGGAGCTGCCAATCTTCAAGGAGTCAGT-ACGAAGCTGAGGAAATCACCACACGGCCATTTGTAAGTTGTGGCTCACTTACGCAAGAAGTATCAATCCCAGCCAAGGTCACTGTGGTTTGGGTGTCACCAGAAGTCAAGGA----GTTTGatggatggatgatgaatgaatgaatgaatgaatgaatgaatgaatggatCTTGTGGTCCCGTGTCAACTCAAGCCATTCTTCAATTGGAGGGCGGGTACCTGGGTGTG-ATTTATGTCACGAGTATGGGGT-----------ATAGGGAGGAGCCGAGCCCATGTTACTTACTCTAGACAGGGGTTTCCAGGAGAGATCTAGGTGCAAGAAAGTCGAGGGCACATCAAAGGGAATGTCAATGTTTTCTTCTTTCTTCTTCTCTACCGGTGATTGCTGGGAGTTTGCGTTGTTGGTGGCTGTGGTTGCTGCTGAGGCTGCAGCTGCAGCTGTGACTGCAGGTTTTTGGGGCCGGATATCCCAAAAACAAATCGTGCTAAAAGAAAAATCATGTTATTATTTTTTAAAATTAAG-ACCGAGTAAGAGATGC----AGTGTCCGGATACCAT----GCGAGACAATGGCGACGTCTTAATGTTTCTAGAGCTGAG
s HiC_scaffold_1 132527863 1403 + 233722169 ttaaaacaattaaaggc-cCTTGGTTACCTGATATTTTGTAAAGAAGTTGTTCTTCACTTAGGCTTATCTTGGTTGGGCAGTGGTCTAAATTTGTTTCGCCCTTAGACAGCTTTATCTTGTgggaagaacacaaaagaaagatACATCCTTAAA-----TTAAAagacaatatattttaaagatatgtcCTTATCCTTAAAG-------AAAAGTC----TGTACTGCT--------------------------TTATGTTTCCTCATGCACCAGTGGCACCATGTGATTTCTGGCTCAGCGCCAAAGTCAAAGGACcgtgaaaagtaaacattttgaactgattcacgacatcaaggcagccaccacAGCACAACTAAAGGCACTCATCAAAGGGGACTTCCAGAAGAGCTC--CTTCAGCAAGTGACAACAATGGGAGCTGTGCGTTTGAAGCAAAGGGGGTGTTTAGaggagggattaatggcaatgtgtcttttactgtaattaatttttttaaaatgtaaacattaa---ccATA---------TGCTTTGATC---ACATCTGACATTTTcatcactt-catgctcttctttcACTGGAAGCGAATATAGTATTTAATAATGCATTTCTTGTGATACTTACAAATCAAAAAGAAACTATTGTGTTTGGAATTAGAATCAGACATTCTAAAGAAAAAGTGCATTCTCATTTCCATATTGTTCTCAGGGTAAGTTGCTTTTATTCAAGCTGTGATTCACAATAAATTTAAGTAACTACAATTCAATTACTCCTTTGCTCCATTTGGTTAGAGGTTTCACAGCAATATCGTCCCACTGATGATATGCAAAATATGCAGATTTTTGACTATGATGAGGAATCTGCTTTTCTCAGCTAACGTGAGCACTTAGAGAATTTCAAGCGTCTGGTAATGCAACTGAAT-AATTATTATACTAACATTTGTAATCTGTGGTTTGCTTATACATGAGATCTCAGTCTCAAAT-------TTCTGGTTT-GGTCTAAGCAGATATCAAAAATAACTCTCAGTCAAGGGAT--TTACTGgttgaataaatacatgaac-aataAA-----------GTCCTGTTAAAAGTTGAGCTCCTCTAGTTTTAGAGGGTATAtagatgtatgtgtatgtatgcaa--aATATGTAGTTATGCAAGCAAACAGGAAGGATGTAATCCCTTGTTTCTTACCCTAGTGAGAGGTTTCCAGGAAAGATCTAGATGCAAAAATGTAGATGGTACATCAAAAGGAATTTctatactttcttctttctttttctctgttggcAGTG--TGGGAGTCAAAGTTTTCAGT----------------------------------------------------GGCCTAATATCCCAGAAACATATTGTGCTGAAAGAAAGTTTACATAGACTTTTTT----ATTAAGTGCAAATTTAGAACTACCATTAGTGCTGCTATACGTTAGCAGTGCGATGATGGGTGTATTCTAATGTCTCTGAAACTAAG

a score=12012
s chr3           146065300 586 + 160039680 ATCTTAGGCAGTGTTGGAAGTGAGACGTACCAGTCTGCTGAGCATGTGACGAGCTGACAATTTATTCCACTTCGGTTCTCAAAGACGGATCCCATCCTGTTAATCTGTTTAAGAAAAGAACACTCTGTCAGCtaacagcagtagttctcctccaaggctctctctgacctccctagtcatggacatctcaccaggaatacaTATACACAACTCTCAAAGCACAGAGACTATTATCAGAGAAAGGTAACTTCTAAGTAGCTAGAACTAA---TTTTTCTTATGGCTATTTTC--TTTTAATTTTTTTTCTTTTAAGAAGTTTTGTTAAACTATCTTTAACGCTATCCTAGAAGTTTGGAATCCAGGTTTTAAGATCTAACACAACTCTACTTGGAATTCTTATCC-ATTCTTTGTTCACAGAAACATTTTTATAGAGTTTTAATTAGGATGCATATAAATGTTGATTCTCAGA--TTTTTCAGTTTACACGACCTGAAT-TTTATCTGCATACTCACAGATTACTTTTAATTGTTTTGTAAAATGCAGGTGACATAATCACCTCATTATTCACTAGTTTTGGAAATGCAGGCTCTT
s HiC_scaffold_1 132530217 462 + 233722169 atGTTGAAAAATGCTTGAAATAAGACATACCAGTCTGCTGAGCAAGTGACAAGTTGACAGCATATTTCATTTCGATTCTCGAAGACAGAGCCGAATCTGttaatct------------------------------------------------------------------------------------------------------agtttttaaaatgca--------------agaacAGCAAATTCTGTTTACCTAGAA--AAGTTTTTTTCTCATAACTATttaccttttcaattttct---ttttaaaaatttttaataaaag---cataATGCTATCACAGCCATTTGGAAAATAGGTTTTATAATCAAACACAATTCTGCCTTATAGTCTTGCCTAAGTCTTTTGTTACAGAAACATTTTTACATAGTTTTAATTAGcatatgtataaatttttatgCTGAGATTTTTTTCGCTTGGCCTGATCTGGACATCCACTTTTGtattcataaatta--tttcattataatgtAGAGAGAATGTACC---ATCATTTCACTATTGATTATTATT----ATGCATGTTCTT

a score=14461
s chr3           146066791 319 + 160039680 caaaacttacctcgaatgagTCGGGCAGCCAGTGTATATCCGTGATTACTTTCCTATGGCCATTTTCAATGGAAGACACTGCACAGTGTCTGATGTACATCGATTCTTTATTGCTGTCTGGTTCAAGGAGAAACATGGGCTGGATAAAGGTGAGAAGAAAGTTATGTTTCAGAGAGCTGACAGGCCA------ACTTTTCTGGCCATTCCAGTTAAAATGTAACAAGTCAGAGTTGTATCAGTTAAGGTAAAACACAAATTCGTGTTTCCCTATACCACATACTTA-GTAACAGGTTTACCAATTTTCCCTTTCAAAGTAGTTTAA
s HiC_scaffold_1 132531169 322 + 233722169 CAAGACTCACCTCAAATGTGTCAGCCAGCCAGTGTATATCTGTAATCACACTCCTATGACCACTTTCTATTGAAGAGACAGCACAGTGTCTGATATACGTGGCTTCTTTGTTACCGTCTGGTTCAAGGAGAAACATAGGCTGAAGGAATATTAAAAGAAAGTTCCACTTCAGAGAGCTGATGTGTGAACTCATACTTTACTCACCATTCCACTTAAAAT-TAAAACCTTAGAAATATA-CAGTTCAAG-AAAACATAAGCTAATGTTTTCATGTACTATATATTTAGGTGATAGGATT-TTGACTTTCATCTTCAGTTTAGCttaa

a score=18476
s chr3           146068404 1290 + 160039680 CCTTCCATCCTAGGG-TCCTTCAACAA-ATCGCTTTATACATAGTATTTGCTTCCTTCATTTCCCTTAATAATAAACACAGCCAACAAATAAAACCCTGAAAACTCCTGTACTGGCCAACGAAGCT-----TGTTGTGTTTTTAGTGAGTGATTCCATAAAACGCTACTCAGCAT-GTGCCCACAAACTGATGCGAAGGGTGGCAAAATGAAAATGATTTCCTGTGCTGCCTACACGGAGTCTTTAA-AAACATGGCAGATCTGTTATACATGTTTTTGAGAAACCCTCGGATGGGGAAAGCATCCCCGTGAGTGAGAATCTCTTAGAGAGCAAACCTTGAGAGAGGTCTTTTTACTTCTGTGGCCGCCCGTCTTGATGTTCTCTATGCGGTCCGCGTGTGCCGTGATATCCCACAAGACGATCTAAGATGGAGAGAGGTGTCAGCATAGCACTTTCAGGATTCAGAGAATTGGGTCTGAAAGACTGCTTTTTAAGGGAGACCGGGGTGTACCAATCTGAGAAAGATTAACTGCGTAACCAGCCCTAGCTTGTAGCCAACAGCAGTTGCCTTAGGGCGTAATCTGACCTAGTTTGTAGCGGAAGTAACTCAGCATCCGTTAGATGGGATGTTGGGGAGGACGTTTTCATCTCTCCATCCTATCCCCGACTCTTTGTTTTAT--GCTTGTGTTAATAAATGCTACTACGGAGCAATT----AACTGCAAGACAAACATCGTGCACTTCCC-AGGCTTTGGGGGAGATTTTGTTCCGCTCT-----------GAATCTAGGTACAGCTTGCTTCAGACCTGGGGAGGAACGGACTTTACCCAGATTCTCAAG---------------AATGAAGTACAGACATCCA-------ATCATGGGGGAAGAAAGGCAGACAAATTAT--------CTTAGT------TCCTGACCCA----GAATTTGTATGTTACCAGAGGGTCTTTC-------TTTTAAAAACAAGAACAAAGTAGAATATACAACAGGAAGCCAGGGCAGTCGTCAGCAGCTAA----ACAGCATGCCCGAACAAAAAGAAAACATTAACGAAGGCCGATATGGGAGAGCCATGGGTGACTTTA-TTTTATTATGCCCTTTCCCAAAATACTCTACACCAGTCACACCATTCTTGTTACACAT----GCAAAGGCACTTT--GGGTGTTCTTGGCTTAGCAAAT-GGCTCTGGGTCATTATTAGGATCTCAGCAGCTGTTGAACAAAAACCATGGGGACATTTGCTTTCCTAATTTTCC-------------TGCTGCTCTGGGGAAATGAAACCTGGAAGCTGCTTCCATAAAAAGCTTAGCTA--AGGAAGCTCTTTTAGTCACACGCAGA
s HiC_scaffold_1 132531909 1261 + 233722169 CCTTTCAGTTCAGAACTCTTTCAATGATACCACTTTAAACAc-----ttgatttcttcattttatttaacaatt----ttattaaCAATCTAAACCCCTAAAA-TCCTGGGGTGGATGATGTAACTCGTTTTGTTGCATTTTTAGTGA----------AAAGC------CCGCATTATGTCCACAAGCAGACATGaag----------------------cctttctttcttctgttgaatatttattaaatttggcAAGTCTGTTATGTGC-TTTTTAATAAACCCttgaacagaaaaaacaaacttgCAAGAGACAAGTTAT--AGGCACCAACCTTGAGTGTAGTTTTTTTATTTCCACCCCCATCCGCTTTGGTGCTTTCTATGCGGTCCGCATATGTGGTGATATCCCACAGGACaatctaaaacagaaataaatgttattataaCATTTTCAGGAAATAGTTAATTGGATCTCAGAA---GATTTTTCTGTTAGAC-------TACCA-----------------TTGGTATCC------AGCTTG----CTACATCAGTCACCTTAGAGGAAAATCTAATCTAATCTTTATTTTAAGTAAAGCAGTAACTTTTTAAGCAAATACAAAAAAGGACGCTTCCTTTTCTCTGAGAGTGCTTCAGCACTTTGATTTCTGGGCTTATACTAAta-----------tgagaactttttaaaatccaagaTAAATATCATGTGCTGCCCTTTGCTTTAGGaagtttgtttttctgtccttgtGAATGTGCGACTCTAGGGACAGC-TGATTTAGACCCACAGAAAGGAAGTCTTT-CCAAAATTCTTCAGGTTTAATTTCTTCAAGATTAAGTACAAATACCCAgatgtttaataataaaaaagaaaggctgGTGAGTGATACATTCTGTTTAATTGAATGTTATAGCCCAGTCTGAATTTATATATATCCAAAggatcattttgaaaaatttgaaatattggGATAAAGTAA-------AACACTAAGTTAAATTAATTTTCAATGACTAAGtagacaaaatacataaa-aatagtaaaatgtcAAGGTATAC---------AGAGTTatgcatgattttatttttacaatgtatttt--aaaaatattcttaaagagTTATGATGTTCTTGTCatgaagaacaacaacaaaaatttcagGATTTTCAGGGCTTGGAGCATAGGCTCTGAATTGTCA--------TCAGTTACTATTGAAT-GAAACTAGagaaaaatttgttttccttaatttttgtttttgcttttgttttgctttgaataaATG-GGCATGGGAGCtgcacatatttaaatttttaccatTAGCAAGTTTTCCCAATCACATGAAAA

a score=14240
s chr3           146070560 608 + 160039680 TGCCTTCTCTGTGCCACACTGAACACTTAAGTTCTAAAGCTACCGGCATCAAGGTGCCTTACAG-----------CATTAGTAAACATATAAAG--ACAATTCCTAAGTACCTGTCCGTTAATGCAGCCTCCGGCGATGATATTGGGGTCACTTGGACAGAACTCGAAGCAGAAGATGTCATCCGGGCTCTCCAGCATCAACTAATGTCAACCCCACAAAT---AAAAGAAGGTATGAAATAATATTGAGAT----------------------GGGCAGAAGGCTAATTCTGTAGCT------------GTCTATAGGCAACGCTCATCTGAGGCAGCCCTCAG--TCAGACCTCTGGGGTTGAAGGCCCTTTTGTTGAATTTTATCACTGACATTGGTTCCGTCTATGAGACTCGGTGTCTCTCTCTGGGATCTAGTC-CTTCCATCACCCACCCAAGGATTATACAATTATTGGGGACATGCTCTCCTACGT------CAAAC-AAAAGACTATGAAGTTGGTGTTTCTGAGGAATGCAGAGGATAAGCTCTGAGGGAGGAGGAGGTATTTGTCTT-----TCTTCTTTATATCTTTACTCAGGCATCCAGTGGG---CAGGCAAACAGAAAACTCACTGAATGGGAGAACCCGGAAGTAATGGTGGTAAATA
s HiC_scaffold_1 132533344 656 + 233722169 TGCCTTTCCTCTGCTGAACTGAATATTTGAGTTCAAAGAACTCCCAAATCAAAACTTCTTGCAGAATGTTTTCCACGTGAAGCAGCAGCTAAGGTAATAATCCACACCCACCTGCCCGTTTATGCAGCCTCCAGCAATGATGTTAGGGTCACTTGGACAGAACTTGAAGCAGAAGATATCATCTGGGCTCTCCAGCATTAACTAACA--AACACCACAAAGtcaagaaaaaagggagaaaacctATTGAGATCATAGCCAGCCAAGGTCAAGACAGTTAGAAGTCTAATTTCACAGCTCAGGCATTTACAGTGCATGACTGATGTACACTAGAATCTGTTCTAAGACTTCTACCTCTG-----GAAGGTGCAGTTGTTAAATTTTATTGTGGGTA-TGGACATACCTCTGAAAGTGGATACGCTGTCATGAGGCTTCGTCTCCTTCTACACCTACCCAAAGGGTATGTAATTATCGGGG------CCTGTTACgttttttccaaatgaaaagaTTACAAAATCAGTGTTTCT-AAAATGGTGGCAGATAAGCTTTGTGTGGGCAGAA--TCTTTGTCTTTGTTCTCTCCTGTGTACC---AGCCTGCCACCTAGAATGttctaaacaaagcaaaacttcaCTGGATGAGGGAATAAGGAATTATTGCTTCTGAGTA

a score=20817
s chr3           146080207 1263 + 160039680 AGACAGGGAAATCCTGCTTTC-TAAGAGTTTACAACATTAGGGGACCATACAGTAATTTGCAACTAACACTTTTCTAGAGACACGATAATGTGGAATTTGGAAGAGTTAGGTATCCGGTGCAACCTCCATCAATTACCTGAGGGTGGATGGGGTCGGAGAAGCTCCAGAAGAGGAGCAGTGACGGCTGCAGCAGCAGTCTGCCGGAATTCTGGACTCTCTCTTCATAGGAGAGGCGCACGGCCACAGACACGACTATGAGCCCTGAGTGAA-CACAGGTGCAAAGCA--GTCAGCAGTGC-TGTCCACAGAGGGA-----CCTCCGGCTGGCGCTCGCCATGGCCGCAGAGCTAATGTGTAAGTGTATGTCACTCAGCCCTGAAAATGTCCCCACTGAGATGTGTTACTGAGTTAGCATGCACAGTGTACTTGGAAGGTTTGGTAATAAAAGATCAGGATtttattttatttttaattgtgtgtccatgtgttggtccgtgtggc-tttgtgcacaactgcagaatgactatgggtaccatgggggtggtaggagatgtcatatccaccagagacagagttgaaggtaattgtgagccacctgatgtggatgctggatatgaactctggtctaagtatgtgctctcaaccaccaagccatctctccagccTGCGAGAAGTATTTTTAATAAGAGAAAGGCCAGTGAGGAGGGTTGGAAGGGAGAAAGAGTAGAGACCTC--TCTTTCCCTGGCTGTACCTGGACACATTGCTTTCCCCTGAGCTGTTGCGCTCTTTCTG---GGTGTCTCCCCAGAGCGT-----TAGGGGCAG----------AGGATTCAGC----------ACAGGAGTCTGGCAAGCCACAG------------GCAAAGAC-----------AGGTTCTTTGT----------------TCACTGCTTATTGACCGGGGCTGGAGCTCCTAAGTG--------------------CA-GGTGTGTAGAGCTTGAGAGAGGGGCCTGGCACTCAGCAAGTCTTACATGTTCAGCTAAAACCAACCCCATCT-------TAAGTTTAAA----------------TACTAAAGCACGAAAGGGAGCC----------CCCCTCACCGAAGATGGTCGGGTGCCAAGAGACACAGGTAATCATTTTCTCCATGGTGTTGTGAAGGTCTGTAAAGGACTGGTACTCCTTCAGATGGGTGTCAGTCTTGTCCCCAAAGGTGCTCTCCTCCTCTGCGAGGTTCTTCCAGTCGTCGATAAACGTGTTCATGATCTCATTCTGCTGCAGGGCTACTTCAACGCTGTTTTATGTTTTAAAAAGAAGCATCCGGCACGCTGGATGTTAGTATCCAAAGACGC
s HiC_scaffold_1 132535216 1245 + 233722169 aaaaaaagatatcctaATTTTATAAAGGGCTACAA---TAAAGTGCTTTAAAATAAGAGATAGCTAA---------AGATACACGAGAAAGTAATACCTCAAAGTTTTACACTTACGGGGGCAGCTC-ATTCATTACCTGAGGGTGTATGGGATCAGAGAAACTCCAGAAAAGAATCAGGGATGGTTGCAGCAATAATCTACCGGAAAAGTGGACTCTCTCTTCAAAGGAAAGTCGCACAGCCACCGACACTACTATTAGTCCTGATTAAAACACAAATAGAGGTTAAGGGCGGCAGTAAATGTCCGTGGAGAAAGGCCTCCCGCGGCTGCTCCTCTCCACTGGCACGG--------TCCATTTCCATTTTGATGAGATCTGAATAT------------AAATATTCCAAAGGGAGCAAG---AGCGCTCTTAGA--GCTCTGCCGTGTAACA---------------------------GTGTCC-----CTGGGCCACGTGTCGTTCACTCAGCCCTTCAGTGTGG--GTGGTCCGAACTGAGCTGGTAG----TGTAAAACACACAGTGCAC---TTTGAAGAT-------------TTAGTGAGGA--------AAAAGGTTtgtattgtgtatttatt------------------------------------tgttttt--tgaga-aaagttcAGTGGGGA-------ATAAGAAGGAGGGCAGGGACTGCATTTCTTTCTTGGTTCTACATTCACACATTCCTGCCCCCT---TTTTTGAGCATTTTCAGAGAGGTGCCAGGCCAATGAATAATTAGAAAGGCAGCTTATGAAGGGGAATTCCACCGGGAGCCCAACAGGGCTGTGTCAAATCCCAATTCTGCATTGCAGCACAGACTGAACTGAGCAAGATACTTTCTGAAGCTAGCTTTGATCTTACTTCATTGTGATTAGAGATGCATTCCACGGGTGGCTGGGGGACACAGGACAGCCATGGGGTGGAAGGCACTTGGCCGGTGCCTGGCACTCAGCAAGCAGAAGTTGTTTTATTGAAATCGAGCTAATTTATAATGTTACGTATAAAAGCAACATTATTTCAGTATCAAAGCACAAAAGGGAACCATGTCATTTTCATCTCACCATAGATAGTTGGATGCCACGAGACACAGGTAATCATTTTCTCCATTTGGCTGTGTAGGTCGGTAAAGGACTGGTACTCTTTCAGGTGGGTATTAGTCTTGTCCCCAAAAGTGCCTTCTTCTTCTGCTAAGGACTTCCAGTCATCAATAAATAGGTTCGTAATTTCATTTTGTTGCAGGGCTATTTcaacactattttattttttaagaaaaagca---aaattgttGTATTATAGTatttaatgatac

a score=31861
s chr3           146092676 1949 + 160039680 ACAGTAAGATTCTAGGTGGGTGTCAGCCAGCACTATGACTATTAATACCATTTTTCATTTTCCTACTTCATGGCTTTTAGCATGTAATAGTATCTTATTCACC-AAGATTTCAAAAAGAGCATTACTGGGTATAACCAAGTCTTCCCAAATCAGATGCATGCCTGCCTGTGTCTACTGTATATCATCTCATACCATTTTGTCTGCGTGCTTGTGTCCTTGACTTCAGCAATGACTTGCAAGCCGACATCTTTCTCAACTTGTGAGAGGGTGTAATTTTTCTCTGGGTAAGACGTACACTCAATGTAGGCATCTTTTACGCTAGAGGCATTCTGGTCACTGAAAGTCACTGGTGCACCAAATTCACTCCGTTTTCTAGAAATCATGTAGGTCACCTGC-AACACACATAAGCAGCAGA------AAAGTGAA------TGTGCGATACAGTGTCGGTGTGCACACGGTGTCGGCG---TGCACGGGCCCTCTCAGAGCCCCTTGGACCCTTGCTGTCCCTCTCCAGCTCCTCGTGACCTTTGTTCCCACAGCCTGCAGCCACTATTCCTCACTATGTTCACCATGACAG-AGGCAAAAAGGACAAGAGGTGACAGGGGGTTACATCTGGACTAGGAGGAGACAggtaagaggtatgtggaagcccaccttct------atttgggg---caaccctgagtgtaatctgcgtttctgagctcctctagggactcaggacaaagccttccttctagagactctggccg-gagtgctcccttgg---aggacttctctttttcctgtcctgcACTGTCCCC-----------AGCCACTTGCACATGATCCTCCCCTCAAGAGTTGCTGGGGGGGGGGGAGGAAACCCCACTGTGTTCATTTCCTACTGTTGCTGTAGCCAG--------------------CTAAAACAAGGAGTTCCAG-TTTTACAGCTGTGGAGGCAAAACATCTGAGGTTG----TCTGGAGGATTCCT-----------GCTGAGGGGCAGTGGAGAACTTGACCTTGCTCCTTCCCTGTACCCGGTGAAGCCAGCAACCTTCCCTGTACCCGGTGAAGCCAGTAACCTTCGATGTTCCTTG-ACTGTAGATAAACTCTCCCTCGGGTCTCTACGGTCTTTGAGCAAGCAAGTGCGCTGGGGATTGAACCCAGGGCTTTGAGGGCTAACGGTCCCATTCTTGGTCTCTttctcatggcatccgtgtctatgtctc-catggaatcaatttctcaaggacgccaacaaaagcagatgaggggcttaatctgttt----gtgacctcactatagctaactatatttgcaaagatgctccccataccagtagtgtcacactctggggtactaggggccaagagactttaagatactctttcttggggagcagattcaatctatgaTGCCTACCAAAGAAAGAGACCGTTCTTCTACTAGAAAACAACAACAATACCCACCTCCCACCCACAGATTTAAAAAAAAAAAAAGAGCAAAATCTGCACTTCCCAGTGACCCATACAGCAAAGTTTAGGGTCTCTCTGG-AAAGAACAATATCCAGTTAGAGGGAGGTAAAGATCAGAAAGCACCATGAAGACGCTAACCCGCTTTCCTGATTCCTGGACAGATTCTTCCTCAATTTCTTTCTCGCTGCCCAGCGACACCCATGGCTTGGAGACGGGAGGATTGTAGACGTACACGTCTTCTTGGACGTGCTCCTTGGGCTCTTCTTGTTCCTCTGGCACTTCTGGTGGCTAGAGCAGAACAAAAGGCAGGCTAGCGCACATGGC--GGCTCTCTCACACAGTCGCGTGCGCCTCTTACA-----ATGAGCTTGGCTTTTATGTGGGTGCATGGGGCGCTCCTCACATTCTTGCCAT-------------CCTAAGCTTTCAGAAGTGAACT-----GAGCCAAAAGGGGGAGAGACTggagaagaaaaagaagaagaagaagaaggaggaggaggaggaggaggaggaggaggaggaggaggaggagaaagaAT
s HiC_scaffold_1 132544284 1822 + 233722169 ATAGAAATATTCCAGATGTGAGATGACTAGCAATGTAATTATTACCATCACTCAT--TTTTTCTACTTCGTAAAGTCTC-CATATAATcgtatttaattttcttaagatGTTTGAA------------GGTATCAT----------------AGATATGTAC--------ACCCACTCTCTACC------CACCATTTTGTCTGAGTACTTGTATCctggacttgagggactgcttgCATGCCAACATTCTTCTCAAGTTGTTTCAGAGTAAAATTTTTATCTGGGTAGGCTGTACATTCAATGTAGGCATCTTTTACACTGGAAGCATTTTGGTCCCTGAATGTAATTGGTGCACCAAACTCACTTCGTTTTCGAGAAATCATGTATGTAACCTGCAAAAACATGTCAACAGCAAAGGTAACACAATGAAGTCTCTggagaaaaacagacatgtggtGCACA--GCCTTGGTACTCTGCCCAGATCCTCTCAGATCCTGCTGTACGCTTTGTGATCTCCTTCAGCTC--TGTGCTTTGCATCCCCATGGGCTG-----------CTCTAGTAAGCCCACTTTGCCTGCAGGTGCAAAAAACAAGAAGCAACTGAAGTTTACATAGCAGCAGTGGTGGGCC--GTAGGAGCCGTATAGAAGCTTATCTTCTTGGCTGCTTTGGGGGGCTAACTTTAAAGTCTACTTACACTCCAGAGTTCCTCTAATGTC-CAGGCCACAGCCTG-----TAAGGCTTTTGCCTGCGATTGCTTCCATGTTCCTGCCCAACTCCTTGTCATGTTATCTGATGGGACCCTATCATAATAAGTCATTCCCAAACAAATCCCCACTCAGGAGTTGCT------CTGGGAGGAAAGGCCATTGTGTTCACATCTCAAGGCTGCCATATCCAAGTACCACAAACGGAGGTGGCTTAAAACACATAGATTTATCTCTTATAGCTGTGGAGGTTGATAGGCTGAAGTTAAGGTGTTGGAGGATTTGTTTTTTCAGCAGGTTGAAGGGAA---AAACACCTGTTCTCACTTTCCCCCAGCTTCTGGTG----------------CTG-----------GGCAGCGATCCATAGTGTTCCTGGAACTGTAGAT---CTGtccctcctgtctctgc-ttccttcaTCA----------------------------------------------------CCTGCTATTTCTCTTGTTGC-------TCTATGTCCCTCATGA---CGTTCTTATGTGCATACTGATCAACTTGGGTTAGGAGCCTACCCTGCTTAAAGGTAACTTCATCTTAACTAACTATACCTGCAAAGCTTATTTCCA----AGTAGGGTCACATTCTGAAGTGT--GGGATTA--GGGCTTTGACATA-TCTCTTTTGGCAGGCAAATTCAAGTCACAACACCTGCTTAAGAA--------TTAttctat--gaaaacaaaaacaa------------------------aagaaaacaaaaacagta----------------------cagATAGCAAATTATATCAACCCCTTGATAATAAATGTTGTACAGATACAAGGAGGTAATGACTGGTGATTATATTTAAGCTTCTGACCTGCTTTGTAGATTTCTTAACTgattcttcttcaatttctttttcactgcCCAAAGAAACCCAAGGTTTAGAGACAGGTGGTATGTAAGTGTATATTTCTTCAGGGataaattctttatattcttcttgGTCTTCTTGTACTTCTGAGgcctaaaattaaataaacagcaTTCTAAAACACATGACCAAGTTTAAGTTTATAGGCACATGCATATATTTTGTATGTACAAACTTCACTTTTATCGAAGTTTAT-AAGCACTTCCTATTTGTCTGCTTTATCAGTGACTACCTTTGAACTGTGAAAACTAAACTATGCAAAACTGAAAAAGGAATATCCTTGATGATCAAATatatagaaaggagaaaaagatgggagagga-aataaggaaataaaacatcataAGAAAAAAGCAT

a score=8315
s chr3           146095286 277 + 160039680 CTTCAGATTTACTTACCTTTAAAAAGTTCTCCTTGCCGTCCTCTGTTCCAATGAGGTAAAAGTTAAGTCCATACTTGAAGTCTTTGTCATAAACGAGGAGAAGTTCCTCCCCTGGGTACTCCTGTAGGGGCCACCAGCAGAGGGTGAG-----GATTAGTGGCTCATTCAGTTCCAGCAGGTGCCAATGTCAGACTAACGCGGTCCG---------------AAATGTAAACACACCG--ATAGTCTGCCTTCTGGACCCAGCTCCCAAAG--------------------TAAGAACACAAGGGAGCCATGGACGTTT
s HiC_scaffold_1 132547428 318 + 233722169 CTTGGTATTTGcttacatttaaataattttccttgCCCTCTTCTGTTCCAATAATATAAAAGTTCAGCCCATATTTGAAGTCTTTGTCATAAACAAGTAGAAGCTCATTTCCAGGATACTCCTGTGGGGATTCAATGAAAAGAGAAAGTGCACGTTCAGCAGC-CATTTGGTTTATTTAGATGCTGACACAAAATTGATATTTCTCGAGTCAACCAATCATAAAAGATAATCATAGTGCTATAATATAACTGATAACCCTAACTTGCAAAATGATCAGATTAAAAAGCTCTTAAAAATACAATGGATCCATGGAAATTT

a score=15443
s chr3           146097075 340 + 160039680 ACTTGTGTTGTGTTCTGGCAAGTCCCTGAGTTAGGACTGAGAACAAA-CAGCTCACTTGTATTTACCCGGACAATTTTTTTGACTGGGTGGAAGTCAGATACTGCGGCTCGGTTTTGCAAGTCTGCCAAGATATCTTCCTTTTTGATAAGCTTATACGTTTGTTCGTCTGTCATATCTTCATCTACTCGACAGTTGAATATTTCCTGGGTCTTGGTAGTTAATACTAGTGGATAAATTTCTGGATGGCCTGTG------AATGTAGAATTTGAACATTAAAT---ACAACTTAAAACTACAGCAGCAGGAAATGCTTGATTGTTTAAATAATTTTCTTGGTTAAAAATTT
s HiC_scaffold_1 132548023 336 + 233722169 ACTTGTGTTAT--TATGACCA-------AGGTACCACTGAAAACAAAGCGGGTACACTGTACTTACCTGAATAACTTTTTTGACTGGATGGAAATCGGAGACTGCAGCTCTGTTGCGCAAGTCCTCAAAAATGTCTTCCTTTTTGATGATCTTATATGGCATTTCATCTGTGAAATCCTCATCTATTCGGCAGTTGAATATTTCCTGAGTCTTGGTAGTCAGTACTAAAGGATAGATTTCTGGATGACCTAGGAAACACAAAGTGAAATTTGGACATTAAATGTAACCACTGAAAATATCAGCAACAGGAAAC-----ATGCTTTTAGCAATTCTCctaattaaacattt

a score=44790
s chr3           146107326 3846 + 160039680 [encoded data, 4433 characters]
s HiC_scaffold_1 132559647 3995 + 233722169 [encoded data, 4433 characters]

a score=19862
s chr3           146119647 1188 + 160039680 AACATGCGTTGTGCATTATTTTCTTCACTCAGCAGTGGTCTTATTAATCTTTTTATTAATCAGGAATTTAGA-ATGTCTCCCATGGCTGACTTTTATAGCCCAGATCTACATTTCAGGAATGCTGGGTTTGCCGAGAATGTGGCAATCTATATCAAATGTGTGATTCTGGACTTGGAAAG-------CTGTAGATACGATTTCTCAGATGTTGTATAATTGTAGGCTAAATTCTTCTCCCTTTGCTGTTGAGTATAATTCTTTATGAAAACATTAAACTCAGG-AGGGCTTTCCTGTGTGTGTGGAAGGACTGACTCTATTGTCTTGGTGAGTGTGGGGTATTTTATTT-AACTGGGTTTCCATATTATCAATGCTAGCCTAAGGGAAACTCCTGGATAACTGCCACTCTCTGGAGAGACTTCTTCCTTAGTCTGAAAAAGCCT-ACTATTTGGTATACCCCTTTCAAAGAGGTATTCCAAATAGTAGGGA-CACGTGCCTCAAAGGGTGAAATGTGTTA-GTAAGTATAAGG-----------AAGTTCA---AGTGGGGGGGGTCACTTGGGAACTGGACTGCAGTTGAGAGCCTGCC-----CTCGATGATGTAGCAGAGTCCAGTTCTGGAGGCTCGGTCACACTGCCCCTCCACGTAACA--------GTGGTATCAGAAAGCATTCCTGACCACTG---AAGGGAGAGGGTGAGGCtgccagcttac------actctacacaaaggcctt---atttgtatttgg---------------------------ttgaatgttt------------------cttac------------------------------------------------agtcttatgaggatagatattattaccattttgcagga-------ctgaggctcgatgtaggctgagtgagatgattcaagtcaTCGATGTATCAAGATCCAAACTGGTTCTTGGTTCTGTATAAAACCT----------------------------ACTTATGGATTAATAAGTACATGGAAGTTTTTGTTTCTCCCATGAGAAGGAGTTGAATGACCATATCCACATAAAAATCTGCATATCATTTCAGGGTCTGTTTACTCTCTGAAGTCCTTTCTCAACCTCTCAGGCCTCCGATCTTGGCCGTGACTGTATCTGTTACCCATTGAGCTGGAAAGCACACATATATTGTATACAGCTGTATGTGTAAACATGTCttttttttttttttttttttttttttttttACTGATTGGAGCAGTCCTTGGATTTGTTAACTTTCACCTAGGTGAGAATTCACTTAAGTAGTCGAAACAAGTGAGGAAC
s HiC_scaffold_1 132567692 1261 + 233722169 AATATGTTTTATGCTTTATcttct-----cagaaatatttttattcatcttttcattAATCAGAAGGTTAAACATTTTCCCCACGGCTAGTTTTTATAGCCCATATCTACCTTT-------GTTAGGTTTGCTAAGAAGTTGG-AGTCCAAATCAAACATGAGTTTCTAGACTTGGAAAGTGTGGTACCTAAGCAGTGACTAGTCAGATACTCTGTTAATGTAGGTAAACGTCTTCCCCTTTCACTGCCGAATaaaagttattataaaaatatcaaactcAAGTCTGGCTTTCTATTAAATATAGAAACACT----CTACTCTCCTGGTG-GTTtgggttattttattttgaacaggTTTCCATTGTGTCAGTGTTAGTCTCAAGGATAATCCAAGATAGGTTCCAGGCTCTGGAGTGACTTTCTG-TCACTTTGAAAAAGTTTCACCAT--------CCTTTTTCACAGAGGCAAAAGGTATCATAGATATCAAATGCCATGAAAAGTAAGATGTGCTCCATAAATGTAGGGCTTTCCATGAAAAGCACATACAACTGATGCAATTGGTAGGGACCTGGACTGCAATCCAGCACCTGCCTTTCCCTTGAT-AGATAGATGTTTCTATTCC------CTCTGTCTCAC----ACTGCAGGAAAAACTTTGCTGGCTGTTTT-GAAAGCTGCTCTGTTTGTTGGGAATGGAGGGGAGTGAGGTCACCTGCTTAGTGCTAGACTCCAGGCAAGAGCTTTTGCACTTTTATTTAAGGCTCCCTACAAGAATTTGTGAGTAaactgagggtttagctcagtagcacaagtgcttgcctgccaagcacaaggtcacacgagtttgatccccagtacaaaaaaaaaaattatttgtgggTAAATATTACTTCCATCTTGCATGAAAAGAAATTGAGGCCTAGGGTCG-CTGAGTGActt---tcatgtggaaccagaattaaaaacaaaatgggatcTCATTTTTA---AAGACTTGCTATTACCATTAACTCAGtgttattaaacttttaaaaaaataatctggtgaaagttttattttttctctagagAAGGGGCC--ATGCCCTCATATATGCAAGCTTTTGCATATAATTTCAGGGTCTGCCTACTCTCTGAAGTCCTTATCCAGGCTCCTA-GTTGCTAATCTTTGCT----CTACTTTTGTTACTCAGTGATGCAGAA---------ATATTACACATAA-------------------------------------------TCTTTTACTAATAGAAGCAGCCTGTGAATTTAGTAACCTTCACATAGATGAGAATT-ACTT-AGTAactgaaacaaagagaaaac

a score=17315
s chr3           146121699 510 + 160039680 CCTTTGTTCAGGCTTCT------GAGCCTCTGCAGTAGCAAACACCGCGGGCCTGGGCCTCTCCCAGCTGAGTGGAAGTG-----------TTTGCTTCCTTCCCTAGAGATGGCAAATCCCGAGGTGCTGGTTAGCAGCTGCAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACCCGAGCTCGTCCCCGTCAGAGCAGCTTCTCTTAGAAGACCAGATGAGGCGGAAACTCAAGTTCTTTTTTATGAATCCTTGTGAGAAGTTCTGGGCTCGGGGTAGGAAGCCATGGAAACTTGCCATACAGATTCTGAAAATCGCGATGGTGACTATCCAGGTAAGCATCCTCCTGCAGGAGTTAGGCGGAGCCTCTTT-GCATAGCAGAGAAGGTGGCACTGG--------------------TTCCTCAAACAACTTTTAACTGCACCTGTAAGGACAGACAATAAATAAAGATTTAAAAATTTAAACCCTTCTCCCTT-----CGACTTTGTTTCTTTGTTTGTCCTCTCTTTCTTTCTCTTGATTCTTTTTT
s HiC_scaffold_1 132569031 521 + 233722169 CTTTTGTTTGGACCTCTTCTGGCACAATTCTGCGAGAGCAAACAATATGGGCTTG--------TTAAATTAGTGGGtatgatggtttttttttttttttcttccatagagATGGCAAACCCGGAGGCAATGATAAGTAGCTGTAGTTCTCACGAAGAGGAAAATCGCTACACTATTAACCAGACTGTGTGTCCCTCTGAGGAACTTCTATTAGAAGACCAGATGAGGAGAAAACTCAAGTTTTTTTTCATGAATCCTTGTGAGAAGTTCTGGGCCCGAGGCAGAAAACCATGGAAACTTGCCATACAAATTCTGAAAATTGCCACAGTGACCATCCAGGTAAGCAACT----------------CTAAGCCAGTTtggtttaaaaacaaagagaacaatggacaggtttttttttttttttttttttaaacaactttcAACTG--CTTGCATAGTggagaaacaaataaatac-----aatactAACCCTTCTCATTTGTGgaagattttgctttttt-ttccttcttactttATTCTTCCTCATCTTTCATT

a score=4750
s chr3           146121893 131 + 160039680 AGAAGACCAGATGAGGCGGAAACTCAAGTTCTTTTTTATGAATCCTTGTGAGAAGTTCTGGGCTCGGGGTAGGAAGCCATGGAAACTTGCCATACAGATTCTGAAAATCGCGATGGTGACTATCCAGGTAA
s HiC_scaffold_1 132628620 131 + 233722169 AGAAGAATGTTTGAGAGAAGACTTGAAGTTTTACTTCATGAACCCCTGTGAGAAGTACCGGGCCAGACACCAGATTCCATGGAAACTGGGTTTGCAGATTTTGAAGATACTCATGGTCACCACACAGGTAA

a score=14539
s chr3           146124634 321 + 160039680 GAGCCTTCTGGGTATCCTGCCCAGTCCCTCACAGATGC---TTGCCAGTCAGGCCT---------CTATTTCT--TTTCTCTTCAAAGTTTTTCATCCTCA-----------CGGTATTTCTTTTCTTCTTT-AAGCTGGTTCTGTTTGGACTAAGTAACCAGATGGTAGTAGCTTTCAAAGAGGAGAACACTATAGCCTTCAAACACCTCTTCCTAAAGGGCTACATGGATCGAATGGACGACACCTATGCAGTGTACACTCAGAGTGAAGTGTATGACCAGATCATCTTTGCAGTGACCCAGGTAAGTCAACTGTGCTTCACGTGTTGAttttgtctgtctgttt
s HiC_scaffold_1 132572416 343 + 233722169 GAGCCTTCTTGATGTTCTCTGGGATTCACTGTGAACTCGTTTTGGCACTCAGGCCCTTGCACCACCTGCTTCTACTTTTTTGTTAAGATTgttcaccttcttttttttttttctctatttttcctcttcttttaagcTGGTTCTTTTTGGTCTAAGTAACCAGATGGTGGTAGCTTTCAAGGAAGAGAacacaatagcattcaaacatCTCTTCCTCAAAGGATACATGGACCGCATGGATGACACATACGCAGTGTACACACAAAGTGACGTATATGATCAGATCATCTTTGCAGTGAACCAGGTAAATCAA----GCATaaccattcttttttatttatttgttt

a score=6759
s chr3           146124724 194 + 160039680 TATTTCTTTTCTTCTTTAAGCTGGTTCTGTTTGGACTAAGTAACCAGATGGTAGTAGCTTTCAAAGAGGAGAACACTATAGCCTTCAAACACCTCTTCCTAAAGGGCTA------CATGGATCGAATGGACGACACCTATGCAGTGTACACTCAGAGTGAAGTGTATGACCAGATCATCTTTGCAGTGACCCAGGTAAGT
s HiC_scaffold_1 132635892 200 + 233722169 tatttgattttcttttctagctGGTTCGTTTTGGTTTGGGTAACCAGTTGGTGGTTGCTTTCAAAGAAGATAACACTGTTGCTTTTAAGCACTTGTTTTTGAAGAACTATTCTGGCACAGATGAAGATGACTATAGCTGCAGTATTTATACGCAAGGGGATGCCTATGAGAGCATCTTCTTTGCTATTAATCAGGCAAGT

a score=10812
s chr3           146125382 605 + 160039680 TTAAAAATTGATAGAAAAATATTGCTAT---ACTCATATACAAGTAAAAACTGATTTAAAAAAAGGATATGATTCCTACCGACAGAAAGGTAGGATTTCAATGAGTCATTTAAAAGAATCAGGGATAGGACTTGATGTGAGAGCTTCAA-TATTCAAAATTACTAA--------CAGGATATAGGTAGTCATTAAGTCTTCAAAGCTTATACTTTTGGAGACGTATAATAACTAACAAGAATATTAATTTTGC--AGTTTGGGTAACAAGCAAGGCCTTCAAGCTCATGTAA----AAGAGAGGCTTTTATGCCAGGCCTGGTGATGGTTGTTCTGTGATACTGAGTAACTGACTGCCTGGCAGAAAATAAGCTTGTTTTTCATCCTCCAGACTCAAGTTTTCATTCTGGGTT------------ATTC---------TTGCTATAATTAGTACTTTCTCAAGGTACCAAATCACTTCTTTTGAAGGGATAATTAAAAGTGCTTTTGAGGGCAGTGTTT-----TTGGCCTAGGTTAGCCTCAGACCACATTCCAAAATCATTAAATCCCTTCTTTAAACA--CGTCCCGGAGCAGCCATGACTCCTCAT-TTCTGGAAGCAGCTTATTCAAACAGAGGCCATGAGCCACTA
s HiC_scaffold_1 132573668 620 + 233722169 tttaaatttgtcttaaaaatattgaCAGCAAACTTTTACAAACCTAGAAATTGA-----GAAAATCTTTTATTTAGTACCAAAAGACACACA---CTTCGATAACTTAATTGAAACACTCAGAGTTAGGCCTTCACACAGGAGCCCCAAAGATTTAAAATGGCTGAACATGACCTGGGAAGTAAGTAGTCATTAAGTCTTCCAATCTTATAATTTCAGAGGCTTTTACCAAGTAAGGAGGATATTAACTTTACAGAGATTGTATAGCAACCAACAATTCAAAGTTCATTTAAAAGTAAGTAAGTCTTTCATGTTGGACATgacagtagttttattttgat--------gctAGCTGCC-AACAAAAAGTAAGTTTATTTTCCATAGTGATGAGTTATATTTTTAGTCTGAGTTTCTAATCAATGAATTTATCAATGAATTTTTAGAAGTGATACTTTAACAAAAT-CCAAATTTAGCATTGTGTACATTTCACTGAAAGTGCTCTTAAAGTCAGTATTTCAGTGTGGGTGTCGTTTA----CAGGTTGCGCTGCATAATTATTACAACTCTTCTTCGAAGAACAATCATAGTATGACCATAACTCTTCATATTCCAGGGACAATCTGTACA----------GTGAGACACTA

a score=25188
s chr3           146127979 1313 + 160039680 TGAATGTCTGCACCCCGAAGGGAGACATG-----GCCAGCA----------------AGGGCTATCATGGCTTTGCTTCTGCCCTGGCTGGCACCCCTTTGGCCCTGGTTGGTGTTCCATTTCTGTCTCTCTTTTCCTGTGAAGTACTTGCAGCTTCAGAACATCTCCGTGGGCAATCACGCTTATGAGAACAAGGGGACTAAGCAGTCGGCGATGGCAATCTGTCAGCACTTCTACAGGCAAGGAACCATCTGCCCCGGGAACGACACCTTTGACATCGATCCAGAAGTTGAAACAGGTGATGATCCCCTATAACCTCCAACTCCT-GTTTTTAACCCCTTGATTTATACCTAAGCCCTGTGATACCTTCATCTCTGTAAACATCGAT--GGACAGTACCCTCATGGCATAGGAAGAACTATACAAAAGTTCTTACGTGCCAACTTCTATAGT--GAACCGTTTGTTATAA------------------AACTTAGgccagacagtggtgccgcatgcctttaatccctg-----------------------------------cacttgggaggcagaggcaggcgg-atttctgagttc--------------------------gaggccagcctg-------------------------------gtctacagaatgagttccaggacagcc----------------------aagg---------ctacacagagaaacc---------------------------------ctgtctcgaaaaaaAAC-CTAAAAAACCAAAAAC------AAACAAA-------CAAAAAAACCTCATGAATTCAAAAGGAAAAACAAAT---AGGGAAAGCA-----TCAGGGAACTAGAGGCA-------GGGAGAGCAATGATGTTCTGAGA----------------------------CAGAGCTTGAGTCTTTCTAAATCGTCAACC---------ACTCCAGAAATGTCCT--ACATCTT-----AAAGACAGTAGA----CACAGGACAAGGGCAGCG---ATACTGAGTTCT-TACAGTCTTGATTCTAAA----AGGAATCGATATGAGCAGCTGATCTTGACCG--CTGTCCTCTGGAAATGCAGTCATATCTA---------------------TGGCTTTGTCCCTTTCTGTGGCAGAATGTTTCCTTGTAGAGCCAGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAATAAACTCAACCTGAGCCTGGACTTCCACAGGTGAGGAAAATGGAGGGGCACACAGCTCAGCTCTGTGTGTGACCCCCTCATCTCAAGCATGCTCTGGAGGGGCACACAGCTCAGCTCTGTGTGTGACCCCCTCATCTCAAGCATGCTCTGCTTTCCAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCGACACCAGGAGCTTCCTGACTGTTACGACTTTACGCTGACTGTAAGTGTGGGTTGTGCTCCATGTGGCTCCTACCTAGAGAAAAATTATTTTAACCAGGTGTATGG-TTCATTTACTGGTGCTAAGGCATTGTCAAAAATAT
s HiC_scaffold_1 132578824 1533 + 233722169 TGGATATCTCCACCCTGCAGGGAGGTGGGCACCTGCCAGTGTGGGAGGTGGGGAGGTGGGGACATCCTGGCGTC-CTTCTGCCCCCGCTGACA---------------------TTCCATTTTCTACTTCCTTTGTGGCTGAAGTATCTGCAGCTACGCAATGTCTCAGTTGGGAATCATGCTTATGAGAACAAGGGTACCAAGCAGTCTGCCATGGCAGTCTGTCAGCACTTCTACAAGCGAGGAATCATCTGccctggaaatgacacctttgACATTGATCCAGAAATCGAAACAGGTAATGTTCTAATGCGAG----AGCTTTTAGTTTTTAACTCCTTGATTTACATTCAAAATCAGTAA---ATTTGTCTCTGACCACATTGATATGACCTGTGCAATGAAGGCAGagtaaaaactatataaaaattcTTATGTGTCGGCTTATGTGTTCTAAGCCCTTTACTGTAATTCAGGAATCCTCAAGGAAATCTAGATAAGGCAAGGTTtattattatctctattttccagaaaactgaagcacaagtTGGAGAGCCAAGTGACCTACTCAGGGTGAAGTAATAAGAGGCACCCCTAAGCTTAGCCATGTACTCTGTTGCCTCTTATAGAGAGCTGCCTATAGATAAGTGCATTGAACGGATGGATATTATGCTTATGAAACTTGTTTGTGAATGGCTTATTATATCGAGACGACTAGTAAAGGATAATAGTACTAACTAGTGAAAATTCTCTCAAATActgcctttcttttcttaaagtaCTGTATGGAGGAAAAATgccaatatataaaatattttccaaaacagaTCCTTTACCAGCAGTCCCCACATTTTCAGCACAAAGGATGGGTTTCACAGAAGACACTTTTTCATGGTGGTGTAGGGATGAAAGTGGGAGAG-GAGAATGATTTGGGATGATTCAAGTGAAATAGAGGGCTGTAAACACAGATGAAGATTCACTGGCTCGCCTGCCTGCCACTTACTTCCTGCTGTGCCCCCAACTTCTTTCCTGAAAGGCCACAGAGTTGCATAGGTTTGTGGCCCCCCACATACAACCCCCTGCCCATTCCTGAtctaaaattacagaaa--aatagtgAAGTCTGTTCTTCAATGAATTACCCTTTCACAAtgaagttttatttacttattttaagcAGTGTattatgcttttgtttctttccatggCAGAATGTTTCTTTGTGGAGCCAGATGAGTCTTTTCATATTGGAACACCAGAAGAAAATAAACTCAACTTAACTTTGGACTTTCACAGGTGAGGGGAGCAAGTGGGAGcatagc--------gtgtgtg----------------------------------------------tgtgtgtgtccaccc--TCTACAGTCTCCTATGTTTTCTAGGCTCCTGACAGTGGAACTTCAGTTTAAACTGAAGGCCATCAACCTGCAGACGGTTCGTCACCAGGAGCTCCCTGACTGTTACGACTTTACCCTGACCGTGAGTGTGTGCTGCCTTGCA-GTGGCTCTAGTCTGGAGAAAAATTG-TTTGGTCTCTTATATGTCTTCACATACTTGTGTTAAGGAGTGATTGAAAATAT

a score=17042
s chr3           146130433 1055 + 160039680 GGGAAAGGGGAAGAAAAATATAGATGGATTTTCTTGCCTTTCCTTCTTTCTCTCTGCATGGAGGAAGCAAGAGAGTTAG--ATGGAGACACAGGAGGATCACGC--------------------------AAAGTTTTGTGCTGTAGCTTTGTGCTGTTTGTACTGAGCATCTTCAACTAGTTATCTCAGAAGCAAGAATGCTAGCAACTCT-GTCACCAAGCCCTTTGTAATATGTGGGATGTCAGAGTGATGGAGAAATATAAGCCTAGAATGAAAAAAAATAAAGCAAAACACCTCTCCACTTGGAGTGTCT------AAGGACGATGTCCCTCTGTGCTTGTGTTTCTGTATTTGCATAATTTGCCTGAACACCAAAAGCT-ATCTGTTGCTAAGGTCGGTTGGGAAGGTGTA-CAGAGGAAACCTGTACAAATTC---------------AGCAAGTCAAGTGTCTG------GAACAGAAGAGAGAGCACTCTTGTTTGCTAAGGTGTCCAGGGCTAGAATGC-ATCCTAGAAACACGTGGT-TTAGATGCTAAAATCTCTCTACTGCAGATCTAATTCAGTGTTATCACCTCACAGAGAAATGAAGGGGCACACTCAGGGATTAGCAGAGACCGGTACCAGCTGGTCAGAAGCGAGGATCAGCATGTCCTGTGTCCT-----------------------------------------------------------------------CTG-------------------------AAGAACTG----------------CTTCCTG--GTGGATT--------------TACAGACCTAT---CTTGACTCTCAAACCTAGTCACGCATCCTGG---ACCCCTTTTCCTGTTTTTACAGATAACATTCGACAACAAGGCTCACAGTGGAAGAATCAAAATAAGCTTAGACAACGACATTTCTATCAAAGAATGCAAAGACTGGCATGTGTCTGGATCAAGTAAGTTGTAAGCTCTACTCATTCTCA--GGATGCTAATTAAGTC--ATTAAGCATCACATTACTACCCGCAGGATG--TAGGGACCACGAAGTAAAAGACTGGGCCAGTCCCAGGCCCTTGACCTTCTGAAGGCAGATTGGGTTGCTGTAGATGTCTGGTGATTCAGTCAGTACATAGG--------------AGCATCCAACATCT----------CCTTACCTTCTCTACAGTCCTTACTGACTACATACTCACCGTTCTGCACTAAAA
s HiC_scaffold_1 132583541 1200 + 233722169 gagagagagagagagagagagaagtgattttttttgtctgtccC---------CTGCATGGTAAAAAGGAGGGACTTAGCAGTGGACAGACAAGAAAGTTGGTCCATTTTCTCTCAGTGGGAAAACTGTGAAAGTATTGGGC-ATAGTTTTGTCCTG------CTGGGTGCCT------GGTTATCTC-------------CTGGCACTTCTTGTCACCAAGCCCTCTGTAATACATATGGTATCAAAGTGACTAAGAGATCTACactcagaaagaaaaattcaaaagc----------ttCACCTGAAATGGCTCAAAAGAGAAACAGTGAACTTCTGTGTTAGT--------------AAAACTTGCAGAAGCACTGAAAATTCATCCTTTCCTGAAACTCTGCTGGAGGCTGTAACAAAGCACAGCTGTATGAGCTCTTGCCCTATCCAGAGGGCATCTGGAG-GTCCGTAGAACGAGCAGGAAGGGAGGTATTCTTGTTATATGAGATATACAGGGATGAAATGCTGTCCTAGAAACCTAGGATATTAGA--CTACAATGTTTCTACAGTA-ATCTAATTGAAACTTCTCCATTCACAAAGAGTTAAAGGGAACTTCTCAAGATTGAATAGAG----TTAGCAACAGGTAAGAAGTGAAAATCTGGGTCTGTGGTACCCTGATTAATGCATAGAGGTATCTTAGCTTCAGACACTAATACCAGCAGATCACATAGGTAacttagaaagatcctgtctcaaaataaaagcgtaaaataaaaagagctggggatatagctcagctttTGCTGctgtgggttgttttgtttttctttacagtactggggactgagccagCAAAAGCAACTGCACATGCGTGTCTCCCCTTATTCTTGTCTTCACAGATAACATTTGACAACAAGGCTCATAGTGGAAGAATTAAAATAAGTTTAGATAATGACATTTCCATTAGAGAATGTAAGGACTGGCACGTATCTGGATCAAGTAAGTGACAAGCTTTACT--TTCACAGTGGTTATTAAATAAGGTAAAGTGGTTATTAAGTTACTGTCTCCAGGGTGTATATAGAACACTAGCTAAAA--------TATTTCCAAGTCCCTAATTTTCTGCGAGTATGTCAACATGTTGCAGACATTTGATGTTCCAGGAGATTCCTAAGTTGTCAGAATTGAAACTATCCCCTATATTCTCTGTGTGCCTTCACTTCCCTAC--TCCTCACTCAAAATGTACTTGCAGTCCCCCACCAAAA

a score=58695
s chr3           146132898 4677 + 160039680 [encoded data, 5257 characters]
s HiC_scaffold_1 132586082 4439 + 233722169 [encoded data, 5257 characters]

a score=5471
s chr3           146133610 159 + 160039680 ATCATCGTG-TTAATGTTTCCATGGCCCTCTGTCTTCCAGTTCAGAAGAACACACACTACATGATGATCTTTGATGCCTTTGTCATTCTGACCTGCTTGGCCTCACTGGTGCTGTGTGCCAGGTCTGTGATTAGGGGTCTTCAGCTTCAGCAGGTAAGTG
s HiC_scaffold_1 132657405 160 + 233722169 ATCCTCATGCTTAAcgtttttactctgttttgttctttagCTCAGAAAAACACTCAGTATGTGCTGGTGTTCGATGCATTTGTCATTGTGATTTGCTTGGCATCTCTTGTTCTGTGCACAAGATCCATTGTCCTTGCTCTCAGGTTACGAAAGGTAactg

a score=6333
s chr3           146133836 157 + 160039680 TAGGAGTTTGTCAACTTCTTCCTTCTTCACTACAAGAAGGAAGTTTCGGCCTCTGATCAGATGGAGTTCATCAACGGGTGGTACATTATGATCATCATTAGTGACATATTGACAATCGTTGGATCAGTTCTGAAAATGGAAATCCAAGCCAAGGTAA
s HiC_scaffold_1 132658697 157 + 233722169 TAGAGGTTTCTGGATTTCTTCCTGGAGAAGTACAGGAGACACGTGTGTGATGCTGACCGGTGGGAGTTTGTCAACGGGTGGTATGTCCTGGTGATCATCAGTGACCTGATGACCATAGTCGGATCCAtattgaaaatggaaatcaaagcAAAGGTGA

a score=10549
s chr3           146137238 333 + 160039680 TTTTCCCTATTCTATCTAGAGTCTCACAAGCTATGATGTCTGCAGCATACTTCTCGGGACGTCAACTATGCTCGTGTGGCTTGGAGTTATCCGATACCTGGGTTTCTTTGCGAAGTACAATGTAAGGAATC----CTACAGAGTCCA-----------------------CTTG---------AGCTACTTCACTACTTTGACTAAAGGGTGGAGGGATCTAACACCCTCTCTTACTTCCGCAGCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCTGCGCTGCTATGATCTATCTAGGCTATTGCTTTTGCGGATGGATTGTGCTGGGCCCTTACCATGAGAAGGT
s HiC_scaffold_1 132660358 353 + 233722169 ttttcttcattcc--ttAGAATCTCACAAATTATGATCTTTGCAGCATTTTGCTTGGGACATCTACGCTCTTCGTTTGGGTTGGAGTCATCAGATACCTGGGTTATTTCCAAGCATACAATGTAAGCATTTGGCACTGGGAAGTCCATCATGATTGAGGTTTGTTTCTTCCTTGGGTTCTCATAGCTACTTTTCCACTTCCCCCACTGTgtgaa--------------tttcttaatttttcagaTGCTCATATTAACAATGCAAGCCTCACTGCCAAAAGTTCTCCGGTTCTGTGCCTGTGCTGGCATGATTTATCTGGGCTACACATTCTGCGGCTGGATTGTTTTAGGACCCTATCATGAGAAGGT

a score=22250
s chr3           146139090 572 + 160039680 GGGGAGGGGATGCTCGACTCTGAGAGGCACTGAGAGAGCAGAACCGTCCTTCCTGCTCTAGTTTAGGTTGCTGCAGCTCAGAGGAGTGACAAGAAAGAGCTACCTGGCGAAGCA----------GCAGGCCGGGGCATGG--CATATGCCCCAAAGCAAAGGCTGGTGGCTTCCTTGGGTTGGTTGTTGGGAAAGGAGCACCTGGCATACCAGG--TCAGGATGCT----GTCATGAACAAAAATCTCCCACATGAAGGAACATAGAGGAAAATGAACTCTTTTCACGCCTTCCCCAGTTCCGTTCCCTGAACAGGGTCTCCGAGTGCCTGTTCTCGCTGATAAACGGAGACGATATGTTTTCCACATTTGCGAAAATGCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGCCGAGTCTACCTGTACTCGTTCATCAGCCTCTTCATTTACATGATTCTGAGCCTTTTCATCGCGCTCATCACAGACACATACGAAACAATTAAGGTAGGCTTGTCAGAAGCCGGAG-GCTCTGCCTATCTAGAA-CCGTGTGTGGCGGCACAGCTTGGT-ACTCAG---AGGACACTGATGGGGT
s HiC_scaffold_1 132590931 586 + 233722169 ggaaggggaaggctTGACTT----AGTCACTGCGAGTACAGAACTGTCCCTTTTGCCTGCATTCAGCCTGCTTCACCTAAGAGGAGCACTGAGAAAGTGCTGCTTatcataggaaaaaaagagagtgaACTTGTGCATGGTGCATACATCGCAAAGCAGAGGCTTGTG-CTGCTCCAGGTTATTTGTTTGAAAAGGCTTATTTGGGATATGTGGCTTCACTATTTTTAATGTCATGAACAAAGGTTTTTAAGGGGAAAGAATGCGGAAGAAAATgaactttgctatttttttttccagttccgTTCCCTGAACAGGGTCTCTGAGTGccttttttctttgataaatggtgaTGATATGTTTGCCACATTTGCAAAAATGCAGCAAAAAAGTTACTTGGTCTGGCTATTCAGCAGGATTTATCTCTACACCTTCATCAGCCTctttatatatatgattttaagcCTTTTCATTGCATTGATCACTGATACATATGAAACGATTAAGGTAGGTTTATTCTAAGTAGCAGCATTCT-----TCTAGAGTTTGTATTTTATAGTGCAATTTAGTAATTCAAGGCAGGAAACTGATGGAAT

a score=12143
s chr3           146139352 269 + 160039680 TTTTCACGCCTTCCC--CAGTTCCGTTCCCTGAACAGGGTCTCCGAGTGCCTGTTCTCGCTGATAAACGGAGACGATATGTTTTCCACATTTGCGAAAATGCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGCCGAGTCTACCTGTACTCGTTCATCAGCCTCTTCATTTACATGATTCTGAGCCTTTTCATCGCGCTCATCACAGACACATACGAAACAATTAAGGTAGGC-----------TTGTCAGAAGCC---GGAGGCTCTGCCTATCTAGAACCGTG
s HiC_scaffold_1 132668775 285 + 233722169 TTTCTGTTCCTTCCCTACAGTTTGAAAATCTGAACATAGTCGCTGAATGCCTGTTTTCCCTGGTCAACGGTGATGACATGTTTGCCACCTTTGCTCAAATCCAGCAGAAGAGCATCTTGGTGTGGCTGTTCAGCCGTCTGTACCTGTATTCCTTCATCAGCCTTTTCATATATATGATTCTCAGCCTTTTTATTGCACTTATTACAGATTCTTATGACACCATTAAGGTATGTACCAGTATTTGCTGCCAAAaaccaatgcaaattctgtatgGCTTGGAACGTG

a score=19831
s chr3           146139997 1199 + 160039680 TCGCTGGGAGCACCTGTGGGAGATGAGGGATGCTCACTGCTTGGATCCCAGCCAAACTCTGCTAATCTAAATTGGATTGGATTCTAGCTGCCTGAACCAGGTTTCACCCAAGGAACTTCCTTCACATTGGCTGGGAATTCATGGGGTTATA----GGCAGCCTAGGAGTAGACATCATAGGATTTAAGCTGCATCTTGGCCACGTGTTTCCCAAGTGAGGGTTACGGACAGGATT-CACATGACTATGGGTACAGGCAGACTGGGAGGAGTGAGCACAGGACTACTGCAGAGTCTCAGGACCATTTAACTTCCATTTAGCCT--GGGTGGCTCCAGAAGTGACAGGTCCTA-AAATGCCTGGGAGCGCCCAGCTCTCCCT-----GGAGACACCCCTTCCACTGCCAGA-GCTCCTCTCTGAGTCTGGAAGGCTACTGG----AGAGGCCCTAGTAATGAAGACTTTCCTATTCTTCTGTGTAGCACTACCAGCAAGATGGCTTCCCAGAGACGGAACTTCGAAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTCCGGAAAATACAGATTAGAAGATGACCCTCCGGGTTCTTTACTCTGCTGCTGCAAAAAGTAACTGTTGGGCTTCTCTGTGCTTGGGAGGAAAATACAGTGTGTGGCTGAGCCAGAGATTATTTGTGATCACGCAACAGTATATGTCCAGATACTAGTATTCTGAGTTAAC---AAACAGCTATGACTTAGCAGGACCTGTTCATAGTTTTTGAAACTATTTAATATCTTTTCTGC-TTACATTAGCATTTTTAAAATGACTGATT-TGATGAGGGAAGCTAATGGGTC-TTA---------GTCGCTGTAGGTCTTGGGTATGTTCTCTTTACCACACAGCAAGCCTTGTGCCTGCACTGGAAATAAGCTTTCGCTTCTCA--GAAAC--------------------TTTGGATGACCCAGTTCC-CCTCTCTGAGAGTTGGGATAATTATTACACATCAG--------ACACCATGGAGTCTCTCCTTAAATGAAGACAGAACAATAGAGAGCCCCATCACAGCTGTGTGTGGGATGCTTGGCTCTGAAGGACAG------------------------TCTTTG----------ATTCTCCTATTCATTTAGAAGC-TTTCTGCCCT-TCAGTGTTAAGGTACAAGATTGGAAGAGAGTCTATACACGGATGAAGTCCAAATGCACACCAAGGAGGCATTTGATTAAACAGTGATGGCTTTATTAGCATCCAAGCAGCA
s HiC_scaffold_1 132592638 1231 + 233722169 TTGCTGAGATCATTTAAGGAAAACTAGGAATGTTCATT-CTCAGCCCCCAA--ATAGCTCATTAATCTCAATCAGTT---------------------GGGTTCCGTCCAAGGAGCTTGATTTACATTGGCCTGGAAGTCATGA---TACACCAGGGCAGCCTGGTGATAGAGGCTCTCAGACTCAGGATATGG-TTGGCTCAGTTCTCCCCAA---AGAGATCCAGACTCCACTGCCCCCCACCGAGGGCTTCAGTAGACCTGGAAAAGTGGA---------GCTGCTCAGTCCCAGGCCTGCTTTACCTCAGCCAAAACTAAGAGTGACCCCCACGGCTGCATCTCCTGGAAATACTTGGGAACCCCAAATTGTGCCTCTGGAAAAAAAAGTCCCTCCCTTGCTAAATGATCCATTCTGAATTTGGAATAAAGTTGTTTTCAAGGGGCTTATTAACAAgagctttctcattcttttccacAGCACTACCAACAAAATGGCTTTCCAGAGAGCGAACTTCGTGCATTTATATCAGAATGCAAAGATCTACCTAGTTCTGGAAAatacagattagaagatgacCCTCCAGTGTCTTTATTCTGCTGTTGTAAAAAGTAGTTATCAGGTTGGCCTGCGCTCTAGAGGAATATGCAAAGTGGAGCTGAGTTGAGGAACCTGTATGG--AGGTTTTATAATGACTTCAAATACTGTTGTTTT-AGCTAATTAGAGCTTTCTGTAACTCACCAAGAactgtgtttatattttgaaat-------catattttCTGCTTTACATTGGATGTAAAATAGTAACTAACTGTATTGAGGGAAAATACTGGATTATTATCCTTTCCTGTCTCTGTCGTTTGTTGGAATGTGTTCTCT----------GAGCTCTGC-TTTACTCTGGCTGTGTGGATTTTGTTCTCAGTGAAACAGTCCTGGTCTGACTGTGATTTTGGATAATCTGGTTATGTTTCAGAAAGAATGTGGATAGTTACCATATACCCATTCTAATTGCATTTAAAGATCTTCTCTGAA---AGGCCAGAGCAAGAAACAAGGGTCTCCAAGTAATG-GTGTACTATTTGATTCTGAAGAACAGCTGCCATTCAGTCCTGCATTTACTTCTGTGGGGATAAAGTACTTTAATATTCATTTCTAAATGTCTCTGCCCCGTCAGTGTTAAAGTATGGATCTGAAAGGTTATCTCTACATAAAAGAGA---AGGCACATAGCAAATGCATATCTAATCAAGCAATGACTGTCTCATTAGTGTTTCACCTGCA

a score=10474
s chr3           146150591 477 + 160039680 TGGTTT----GCTCTACCTTAGAGTT--CTTGCTACCCCGGGCAAACTAATGCTAACTGCTTGCACTCGGTTAAAAATGAGGCTGATTGTTTGCCTTCCGGAACAAACCGACTTTTTCTTAGGTGGGAGGGTTGCGGTGTGGTCAACCCTGGTTTCCCCAGCTCTATGAAAAGGCGTTCAGTGAAGCCAGGTGGCTCTGCCAAGCGGCCTCTCCTGAGTTTGAATGTCTGCAGCAGCGCAATTGAGC--CGGGGAGGTGAGGACAAAGTGGCCTTTGGCTCCTGCTTGCTGCTCTTAAAACAAATAGTGGCGGGCTGTTAAAGTTTTCTAAGGGAGCA--GGGAGCGGCCTCTCCTTCCTAGCAGG-----------------ATGTTCTTGAAGCCAGCAAGGAAACTGAG----CCATAGGGAAGTT-----AGTCTATGATGGCTACCTGAATGGATGCTTTTCTGCAAGGGTGGCATAGACTTCTCAGACCTTCAAAAGACCGGTTTTG
s HiC_scaffold_1 132616383 506 + 233722169 TGGTTTCACAGTTCTAGACCAGAGCTTCCCCGCTGCCTCTCGCGCGCGTACACGGGCTGCTGGCGGTTCGTTAAA--CCAGGCTGGGC-CGGGCCTTCCGGAACAAACAGGCCTTTTCTCAGGTGGGAGGGTCACAGGGTGGTT-ACCCCAGTTTCTCCGTCCGCATGAAAAGGCGCACAGTTCGGCCAGATGGCGCTGCCAAGGGGCCCCTCCTCCGCGGTCAGGGCTCCAGCCACCCCGCGGCCCCGCGCGGCGCAGTGGTGCAAATGCGCCTTGGCTCCTGCTGCCGGCTCGCGGGGCGAACAGAGGTGGCTTGTTCTGCTTTCCTGAAGTAGGATTGAGACTTTCCTGCCTTTCCTGCCGGGGGCTCTCCGTGTTATAAATGGACTTAAATCTAGCAAAGAAAGCCAGAATTCAAGAGGGGAACTTGCTAGGTCTGAGCTGGCTGTCCATA---ACAACTTTGAGCAAGTTTGGCATATATTTTTTAGAGTTTGGAAAGAGCAgttgtg

a score=19882
s chr3           146163186 1061 + 160039680 CACACTCTCACATAGA----GAAACGCTCACGTTTCCAGTCTTAGCCTCC----------CTTTCACCCA--CACACTTTCTCCTAACTCTTTAGGAACAGGAGGCATTGTACATCAAGATGCAGAAAATGGCAGA------------------CAACATTTTGGGTTCTGCTAATAGGCATTTTGAGTGAACTGGGTGGTTAAGTGCAAAGGCAGGCGGCAAAGGAGTGGAAAGCTCTTTTGGATTTCTA---GGGCTTCACTGGTCTGAGAGTTTTGTGTCTGTGGAACAAACAGGGTGACGTATATGAACAGGAGGTGCAGGTCAGGAGTTCTGTGAGAAGCAGGCTGTTGCGGGGTATTGAAAACCTG-TCTTCTCTGGCAGATCTGCGATGGCGTCTCTCGATTCTGAGGTGAGGGAAGAGTGTCTGAGGGAAGACCTGAAGTTCTACTTCATGAGTCCCTGTGAGAAGTACCGAGCCAGACGTCAGATCCCGTGGAAACTGGGCTTGCAGATATTGAAGATAGTCATGGTAACCACACAGGTAACGCACACCACTACTCTTTCCTCTGCAGTA--------------------TCCTGTACTTGCTTATTAGTCTGCAAGACTCATACCACTGAAGTTCACGAAACT---AAAATCAAACTGCTTCCAGAGGGCAGAGCGCAGGTTGAAGTTCAATTC---AGATGATCTGGTTTTGATAAACAGAGG-CTACGTCTCCATAAAAACCAGATAAGAGAAGGTTCACACAGAAGGGAGTTTCTAAATTCCCCCATCTCTAATCCATGTGAGGTTCACAGGTGTCAA----AGGTGTTCTCA-------AAAATCCATCAG--------------ATCTTATTTAAA-ATGTTTTTAAA-------------AGTTTCGAACACAGAAATTGCTAAATTCTTCTTTTATTGGTAGCACTGTGCCCAAGGAAGTGCTAACTACTGGGCTTTGTCAAGAGTGCTTGAGCTTTATTTACATTTGGACCTTGATATAAGGTCATACTGCTGATATAAGGTCACATTACCATGGTGGAAGTGGTCATTAGGGCTGTCATTTAGCTGCTGGGCTGTTG-CATTGAACT--CTTCTGTGGCAACTTCTCTGCAGGTGGTTACATTGGAAAC
s HiC_scaffold_1 132628213 1086 + 233722169 CGTACTCTTACATTCAATCtgatatattctctttttttgtctctgtctctgcttgtCCATCTTTCTTCAAATCACACTTTCTTGTAATACTCTG---ACAGAATG--TTATATGTTAAGATGTAgtaattaacaaattttacaaaataaagttCCACTTTTATCATTTCTGAGAATGGCTATTTGGAAAAAGCCAGATGTGTATGGGGAAAGGCAGGTGATGGAGGATCTGGAATAGTTCTCAGATCAGAATAGGAGCTCAGCTGGTTGGAGAGAGTTGTGTTTGTATGAGAAGCAG-----CTATTGTGGCCAGAAAATGCGATTCAGGAGCTTTCTGAGGGG-AGGCTCTT-CAGAGTATCTAAATATTGATCTTCTGTGGCAGAAACACAATGGCACAACTGGATTCTGAAGTGAAAGAAGAATGTTTGAGAGAAGACTTGAAGTTTTACTTCATGAACCCCTGTGAGAAGTACCGGGCCAGACACCAGATTCCATGGAAACTGGGTTTGCAGATTTTGAAGATACTCATGGTCACCACACAGGTAACTCAAACGATTGCTTTTTCCTTATCCTCAGATGATACTATTTTTATAACTTCTGTACTT-----TTGATCTGAAGAGTCCATACCC---ACATTCACAAAGCTGTAAAAATCATGT--CAGCCAAGAGacagctgggaggctgaagttTGGTTTAGAAGATGACCTTGTTTCAGT---CTGAGATTTACATCCT------------------GCAGATCAGTATTGAGGGGACTTTCTGTAT----CTATACGTGGCCCACAGGCTGACCACGGCTGTCAGCCCCAAGTGACTTAACATTTTTGAAATCCCTCATCCTTATTCAAATACACCTTATTCAAATGTGGTTTTGAAGTGAGCATTTTTTGTCTTCTGACTTATAGGCTACTGAGCTTCCTTTTTATCAGGTGCCATAAGCTCTAAATAATACTAATCCTTGGACATTATCGGGAGAG--TGAGTT---------------------TATACGATTGAGCAGTTTATCT------------CCAACATCAAAATAGCCATATGAATTGTCATTTAGCTTTTGACCATCTGATACTGAGCCAGTTTTGGGGAAAGCCTCTCTGCAGATATCTGTATTTGAAAC

a score=5465
s chr3           146163568 130 + 160039680 GAAGAGTGTCTGAGGGAAGACCTGAAGTTCTACTTCATGAGTCCCTGTGAGAAGTACCGAGCCAGACGTCAGATCCCGTGGAAACTGGGCTTGCAGATATTGAAGATAGTCATGGTAACCACACAGGTAA
s HiC_scaffold_1 132569235 130 + 233722169 GAAGACCAGATGAGGAGAAAACTCAAGTTTTTTTTCATGAATCCTTGTGAGAAGTTCTGGGCCCGAGGCAGAAAACCATGGAAACTTGCCATACAAATTCTGAAAATTGCCACAGTGACCATCCAGGTAA

a score=53413
s chr3           146169655 3383 + 160039680 tcttcagcgcaaggtcctgagcatgtctaaacc-cagcctttggaa---tgttttctgagtcctcacaTAGTCCTAT---ACCGAGAACTGCTGATGTAGCGCCATGAGGTAGTTCTCTTCTGTGGCTCCTGTTTTTGTCATCATTGCTTTTCATGTGTAAATTAAGGGATGGATATATTTTTTTTTCCCCTCAGATGCTTAGAGTAGAGAATTGATGAGTATCAGAAGTCATTTTCTTTCCCTGGTAAGTGGTAAAAGTCACATTCCTGTTT-----TCTTTCCTAGCTTGTTCGGTTTGGCTTAAGTAACCAGTTGGTGGTGGCTTTCAAAGAAGATAACACTGTTGCTTTTAAGCACTTGTTTTTGAAAGGATTTTCTGGAGTTGATGAAGATGACTACAGCTGTAGCATATACACTCAGGAGAACACCTATGAGAGCATCTTTTTTGCTATAAAGCAGGCAAGTGTTT-TAAATGACC--TACTTTAAACACTATATAGATATGTGACTGTGTCTTCTTA--------------------ACAAACCAATACATATTA-----------------TTACCTCA---------------------------------TATAAATTTCAT----------------ATAGCCTGTTG-AGGCCTTTTCTATTCCTTCAAGTAATATTAG----------TAGAAC-------TTGTTCATTTAAATTG----TTTCCTTGGGTTTTAACCCTTTTTAGTGTATTGATTTAGAACTACTACTTTGGGGAAATTACCTTAGAACAAAGAGTTAAGGGATT-ATAAAATCAGG---TTTGGTGTAGGTTTGTAACCAAATCTGAAAGTCTGTGGTGGTCTGAAATATGACGTCATAGCATTAATAATCCTAGC-AAGTATTAA---GGACATGGGAT-------------TTGATACAGTGTA--AAGTTGGCAGA---ACTGAAGAATATATTTAGGAGTAG-----TGTCCCCCTTATCA----TAAATTCAATAAATATTTGGGTTCCTGGTATTTGGTAAGTA-----CTACACATTGATGACGTAG------------CAGATGAAATCCTGGCCTGTCTAGAAGGGAAAGCTAGGTAAATGAAGACAAATAAGACATATAATATTGAAGGTTGGTTCATTAATGGAAGAGAACCC--aaaacatgctactaagcacagctgagtttcttgctggcagcgttaaggaagaaattcctttgaccatacttagtggtgcctgtggtagg-gtgggagtcctttcatgaagagggaccttgattaaaattgggtgaagaccatgttttaatagtttaagattggtaaacacagcatgtgaagg--------------------ccatgggagaagtcacagggtcttggaat-tgttgtaagactaaaatttttaattgttagcctacttgataaggttttgttttattgagatggggtctcattttgtagccttggctggcctggaacttgctatgtagaccaggccagcctaaaaaac-catagagatccacctgcttttgccttttgagtgc----tggcattaaagccct---------gttccaccatgcttag----ctTCtattattattattattattaattattaatt--------attattattt----------aatattcttgaaactatta--gtagttgtttgcaacatttctgtaacat--agtaaatgtttcttagtgaagtcagagcaatgaagatggagtctagtaaggccctagtagtgaaggcagccagcca-cagaactgtgttaatgTAAG------------AATG--TTAG--TCATGTTAACGTGATCT----GTGACATCTGCAGTCCTCAGTGAACCAAGGAAGGAGAGGGGGGGGAAATTCTGATATAAGAAGGATATTTGCAGTTTTGAATTTTCACTGGA-----TTTTATTG---------TTTTAACTGACATATAATTAATTGTGTTATAACTATTAGGTATAATATGAGG---TGATG---GTTAACAAATTTCATGAGCTCACGGAGGGAGTCTCACTTAGGAGGAGCTAAGTCACCACCTCATGGGAGTGGTGACATCTTA-CCACGATTTGAATTAGTGAACCAAGTTGATAGAGATGGAG-TCCAGGAAGAGAGAA-ATAACCGACCAGAAGTAGAA---TGCCCTCAGGCTCTGGGAAGTGCCTGGAGGCTGGTTGGGTTTTACAGGAAGAGCCAAGGGACCACATATGAG-----ATAAAGTCTGGGAGAGGAGTGAG-CCCTTGGTTTCAGCTGGGAGGAAGATGGCAG-TGTCCTGAAGGATATTGGTGT-GGTGTAGCTTTCTATGAGGCGGTGTGTCCCTGTG----CTGAAGAAAATGCCTTTGTGCTGTGTGAAGCTGGACACTGCTCCCCAAAAGCACCGCATAAGCAAT--AAAAGCGCTGAAAGCGCATTCCGTATGGTAGGATTTGTGGCTTTTGAGAACCCCTGTGTTTATTTAACTATTATTTAACTGTGTTTTTTAAAAACAGTATCGTCATCTGAAGAATATTTCCCTGGCAACCCTTGGTTATGGAGAAAGTGAAGACAATAGAACTGGCTTGAAGGTCTGTAAGCAGCACTACAAGACAGGGGCCATGTTTTCTTCTAACGAGACCCTGAACATTGACAGTGACATTGAGACAGGTAACAGCAGTGACTGTTTCATCGTGTGACTTTGTCATTTCCTGTGACGAGCA-AAATGTCTCCCATGTGCTGGCAACTC-AGTGGAGCAGGCTCCCCT----GACA------------CAGGCTATCTTT--------TTCTCAGCTGCCTCCAAAAG-CCTTGGCTCAGGAAACCACCCCGTGCTCTGGGAGATGGGAAGAGAGAACTGTTTCTCTTTGATGTGTCTCTTTAG------TACATTTGAAA-------ATTCTTCAGTGAGTGCTCTTAGCCACCGATCCTTCTGCTTCTACTTCCCATGTGCCAGAACCGCTGTTGTGACCATACCTGCTTTACTGTTTATAAAATACACA---GTTTTTCAAAGGTGAATTATGGTTCATAATTATTATTCTTTCTCTTGGGAGATTACCTTACAAAAACTTCCCAGCTAACCATGTAGAGTGACTTTGTGCCATTCGGTTAAATATGTAAAAGGATG-----TGTGAGCACACAGTGTGTGCTTTAAGACTGAAAGTTTGCTATTCAGTCAACAAACCCAAGGCACT--CACTGTTTGTTTCCTGCCATGGAGTGCCAAAGCTAAACCCAATTTG-TCCTTCAAGCACCTGGCAATTCACGAGGAGGGGTCCCAGGAGTGGGGTGGGCTTTAGTTACGTGATGTAGTCTGTTCAGCCATATTTTTAAATCTGATCTTGAGGTCCTTTGATAACATAAGAGGACCCCTCACAGGGTGGAGATTTTACCTGTTTCTTTGAATTGGCCAGTCAGAATCCATGTGTGAACAAGTGTGTCCTGGGCTCTGGATCCTGAAAGTAGTCA---CTAGGTCATA----TTGACCCATGCAGTGTCTGGCTTCCAGGCTGCTATTAGAGGCCATCTTGGGGAGGG-----------GAATCCACCACCACT-GAACATTCCTGGTCTTTGTGCCCTGCA--GCCTTGCTCACCTGAGACATGTGTGGTAgttgtgtggct
s HiC_scaffold_1 132635647 3433 + 233722169 TCTGCAGTTCAAG-CCTTCAGTATGTCTAAGTGGCATCCTTTGGGAGACTGTGTTTTAAGCCCCAACACAACTTTATGGTACTTATAATTGCTGATGTAGCTCCATGAGCTTATTCTTTTATGCAACTTATGTTTT-GACATTATTGTTATTAGTGT-------AAAGCAGAGTTGAGTTTTTTTCT-------GATGCTCAGAGGTGAGGGTTAATGATAATAACAAGGTGTTTTCCTGC-------GTTGGTAAAGCTCATATtcctatttgattttcttttctagctGGTTCGTTTTGGTTTGGGTAACCAGTTGGTGGTTGCTTTCAAAGAAGATAACACTGTTGCTTTTAAGCACTTGTTTTTGAAGAACTATTCTGGCACAGATGAAGATGACTATAGCTGCAGTATTTATACGCAAGGGGATGCCTATGAGAGCATCTTCTTTGCTATTAATCAGGCAAGTGTCTGTGAATAACTTGTACTTCAAG-AATATATTGATACTTGGACTTGTTGTCTGAGAAAGGAGCAAAAGTtatacatacattaaaatattctaatgtaagggccaggggtttagctcagtggcataagtgcctgcctggcaagcacaaggttgtgagtttgatccctggtacaaaaaaaaaattctaatgtaAGCTTTGCACAGTTGATCAAA-AATATTAATTGCTGTTTCTGGAACTAAATAATCGTTCACCTATTTTGAATCTTTCCTTaagattta--tctttttaattcattactTCCTACCTATT------------TTCCC---------------AAGAGATTCATAGTGTCAGAAATTTTGATGAGTATGGGGAACATCAGCTACGAGTCTGTGTTG--------TGCCATATCTTAGCATTGGTAATCCTCGCTGAATCTTAACATGAATATAAGATAATTATATCTAGatagatataagaaaataaattagtagacccccccaaaaaaacatttAGGAGGGAGaagctgttcttgtttttattctttcattcagttAATATTTGAGTCCCTAGTATATAGCAAGTACAGTTCTAGACACTGGGGCTATAGCAATggataaaacaaacagaatacctTCCATTGTAGAGGTGAAAGCTAGACAAATGAG---ACATGTGATGTATAATACTGAATGCTGGGTCTCTAA---AATAGTATGCAAAAAACATACTGATAAGCAAAGCTGGGCCTTCTGCTCCCAGCAGTAAGGAAG---TTTTCTTGACTACTCTCTGTGGTGCCTTGGGTGGATGTGGGGGCCCTTTGATGTTGGGGGAACTTGATTAGAATTGGATAGGGATCATGATatga-aattttagtttagt----tcagtTTTTAGAGGATTTAGTCCTTGGCCAACTCCAATGCAAGAAGGGGTATGGTGGGAGGGTGTGGTGGAAGA--GAGCTGCTCAAGTCATGg------tgaacagg------------aagcagagagcaca----gAGGAGTAGAGGGGCgagatacaccct------tccaggtcaccctcagTGACTCACATATTCCAACTGGACCCTACCTCCTAAGAGCCCTTCTGCTCTGAATTCTTTAGTGAATGATTCCACT-TCATCAGTACCCTTATAATCTGATTATTTTCCAAAAGTCCTACCTCTGAAGGCATGAGCCTTTTGAGGGGCaaaacattcctgaaataaataatatagttATTTGCA--ATTTCTGTATTCTGAAGTGCAAATTTTCTA-TGAAGTCATATTGATAATGATGGGGGCTAGTGGAGCTCTGTCAGTGCAGA-AGCCACACAGCAAAGTTGTGTTAATGTCAGCTGTGCTGTACAGATGGCTTGGATCCCTGGTGATGTG-TCTGAAAGTGATGACTGTTG--AGAAATAAAGCAAGGAAGGAGACAGGGAGTG---CCTGGGCATGAAATGATGtttgcagtttt---cttttaaaaaaattatttttattttctctctactTTTAGTTGGCAGATA--TAGCTATGT----ATTTATGGATGCAGTGTGAGAGTTTGATGTATGGTTGCAATTTGCATTGGCTTGATAAGGG--------------------AAGT-----CCTTGCTGAGGTGGTGAGATGTGAGTCTAGCCTGGAACGAGTGAACTGAGCAGGTAGATCCAGAActccaggcagagggaacagcaaaGGCCAAGAACAGAAGTCTGTCCACAAGCTCCAGCAACTGTGTGGAGGCCGGTGTAACTTTGGGGGTAAAGCCAGCGAAC----TTTGGGGAGCAGTAAAGGCAGAGAGATAAGGCAGAACCTCAGCTGTAGCTCTGAGGGAGGTGAGAGCTGTTCCTTAGCATGTTTGTGTCAGTTTAG-TGTCTGTGA-----TAGGTTCCAGTGCAACCTAAGAAAACTACTTTGGTGT----TTAAATGGGAAAGCGCTGCTGAGAGGCACAAGGGAAGCAATTCAGCGTAGCTAAAAGTGCATTCTGTGTGCTGTGACTTGTGG-----------------------TAAATt----ttcaact---ctttttaaaattagtaccaTCTATTGAAGAACATCTCCCTGGCGACTCTTGATTATGGAGAAAATGAAGACAACAGAATTGGCTTAAAAGTCTGCAAGCAGCAATACAAGAGAGGGAACATGCTGTCTGCTAATGAGACCCTGAATATTGACAGCGACATCGAGATAGGTAACGGCA---ATTGTTTCATTGTATGCCTTTGCCATCTTCTGTGGTAAGAACGGAGGAGTCTCATGTGCCAGCTACTCAAATGGAACAACTTTGCCTTTGGGAAAGTGAATCTATTCCAGGCTGCCCCTAGAAAAGATTTCCTGTTGCCTGCAAAGGACTTTGGCTCAGGGAACCGGCCACCAT-------GACGGGGACAG-----CTCGTGTCTTTG--GTgcttatttaggtttttttcttttgagagagtTTGATTTTTCAAAGTGTAGTTGTACACATCAA----------ATGAAATAACATGTGTAAAAATGCCTTGTGTACTGAT-----TTTTGTTGCttgcaaaatatataaatgttcttTAAAGATGAATTGTGATTAATAACTA--ATTTCCTCTCTTAGAAGATCCTTTGGCAAAATGTTAACAGTGACTTATGCAGTACTATTCTGTGCTACTCTCTTAAGAATGTGAAAGAATGCCATATGTAAATGTAAAGTGTTCAGTTTAAGACTATGAGTGTTTTA-TCATTCAGCAGCCTCTGGTGGATGACACTAT---TTTCCTGTCCTAGAGCTGTAAAGATTAATCCGGCAAGACCCCTCAAGGAACCAACAGTTCAGGAGTTGGAGTC-------TGG-------------------------------------------TATACCTAAATTTAGAGTGATTTTATTA---------------------GTGAGCATCTTGCATTTCGTTTGG-----------------CCATGTATGAGTGAACTTATGATTGGCCCTAGATTCTGAAAACAAGCAACCCCCAGTCACAAATCCAGACCC-TGCTCTGTCTGGTGCCTGTGTTGCTGTCAGAGACTTGCTGGAGGACAGTCATGTGCTTCGTAGCAAGCAACACTAGAATATCAGTGATCTTATTGCCTTGGAGGGTCCTGCTTGTCTGAGACCTACGTGGTGGTAGTAGGTCT

a score=6028
s chr3           146169907 204 + 160039680 TCACATTCCTGTTTTCTTTCCT--------------------AGCTTGTTCGGTTTGGCTTAAGTAACCAGTTGGTGGTGGCTTTCAAAGAAGATAACACTGTTGCTTTTAAGCACTTGTTTTTGAAAGGATTTTCTGGAGTTGATGAAGATGACTACAGCTGTAGCATATACACTCAGGAGAACACCTATGAGAGCATCTTTTTTGCTATAAAGCAGGCAAGT
s HiC_scaffold_1 132572508 218 + 233722169 tcaccttcttttttttttttctctatttttcctcttcttttaagcTGGTTCTTTTTGGTCTAAGTAACCAGATGGTGGTAGCTTTCAAGGAAGAGAacacaatagcattcaaacatCTCTTCCTCAAAGGA-TACATGGACCGCATG--GATGAC-ACATACGCAG--TGTACACACAAAGTGACGTATATGATCAGATCATCTTTGCAGTGAACCAGGTAAAT

a score=7498
s chr3           146173500 256 + 160039680 AGCACTTCACAGCTGGGGCTGAAAGTTGGTTCTGCCACTTTCCTCCT----GAAAC-------------------------TGTGACACTCAAGTGGGATGTACCACACGACTGCTTGTCAGCCCTGCATATGCCGTGCATATTTGTTTTTTCCTGATTAAATTTTCTGGGAAAATTGCTTAAAGAAATGTGGCCAAAGTCAATATGAATGGCCCAGGCAGACGGACAGGACTGAAAACCAGGGCTTACATATTCC-----------TCAGTGGTGACATCGCTCATTTCCTTTCT
s HiC_scaffold_1 132639171 285 + 233722169 AGAATTTCACAGGTGGGGCCACAAGCTGCTCCTGTCACCCTCCACTTCATAGAAGCCATGAGTCACTTGCGATTTCAACAATGTGTCACTCCAATTGAATGCACCTTACAGTTGTTTTCCAGTGACTGATATGCTG---------ATTTTTTC--AATGGACTTTTCTTGCAAAATTGGCTAAAGAAATGTGGCCAAAGTTAGCATCAGTGACTAGGTAGGATGGGCAGGGATGGAAAGGAGGATTTATTTACTCCCTGACCATTGGTTAATGGTGCCCTTGTTcatttccttgct

a score=18796
s chr3           146175193 763 + 160039680 cagagcatcgtagcaggaggcatctgaagcctgcttctgttcgagactgacaatgttaacgtggtccctgggtgaaagcggcacctgccggcttctctactgaagggtgaccgtgctccatgtggtaattagttga-tattttc-tgacagccgttttgaggcgttcctagggtcctgcttctcatcacatggctgctggactcatttcagcatcAGACTCTGGCCAGGAGTGACCATTCCCTGTCTGTCTGTCCGTTGCTCTAGACTGCATTCACCTGGACCTTCAGGTGCTCACCACGGAACCCGAGGACTGGGCACAGACATCTTTCTTCAGGCTGGATTTTTATCGGTAAACACAATGTCAAGTCTCAATACCCAGGAGAGGAGGCCTGGGGCGGTGGGCGGGGGCACGGACACTAGGATAGTG----ACGCTGACAG-TTGTACCTTTTACTGTATTTTATTTAGGCTCGTGCAAGTTGATATCTCCTTTGCCCTCAAAGGAATTGACCTACAGGCAGTTCATTCCCGAGAGATACCGGACTGTTACCTCTTTCAGAATACGGCAAGTGTTT---TTGTGTGA-----TGTCAGCCTCTGTTTCACTCC--CTGCAACTTTGTAGTGGAGGGTAAG-CCCTTCAG-CTACAGATGTTAGATACTGTTGTACTGGAAACTGCTTCAGTGATGGTGTGGT-ACCCATCTAGAGACTGTTCCCTGTGAAGATGGATCCAACCCTTTCCAACTCTCTAAAACCCTATTCTTGGgctgggaag
s HiC_scaffold_1 132648180 746 + 233722169 CAGTGTGTCATGGCAG-AGGCACACGATGGCT-CTTCATCTCACAATCGGGGCATTCACTTTGGTCGGTGGGTTGGTGGG---TCTGCCAGGTTCTTCACTGAAAGATTGCCGT--TCCTTCTGTTTATTAAGTGAATATTTCCAGGGGAAATGTTGTgaaattttctaaatatcctACTTCTCTTGACAT--TTGCTG-----CTTTTAGCACCCAATTCTTACCTGAAACAATCCTTCCTTGTTCTCCTGA----TGCCCTAGAATGTGTTCACTTAGATCTCCGGACCCTCTCCGAGAGCTCTCAGGCCTGGAAGCTGTCTGCTTTCTTCAGAATGGAGTTTTACCGGTAAATATGTTTTCAGGTCTCATTTCCTAAGAGACACGGATGGGGG--------------AAGGAGAGTGGTACAGTGGTGGATGATGACAGGTCACacctttcaatttattttatttagactCTTGAAAGTTGAAATCTCCTTTCACCTCAAAGGCATCGATCTTCAGACGATCCATTCCCGAGAGTTACCAGATTGTTACGTCTTCCAGAACACGGCAAGTGTCTCTGTTGTGTAAACCACTTTCCATGTGTTTTCCATTCCGTCTGTAGC--TGCAGTGTA---TAAGACACACCAGCCTAGAAATCTTAGATGTCGTTGTGTGTAGAACAGTTTTAGTGATGGTTTACTCATTGATCCAGAGTCTGTTGCTTCCCAGCGCATGTCACATCCTTTCAAACTTGTTAAAACCAGAATTCTGAGTCAGCAAG

a score=22224
s chr3           146176382 2250 + 160039680 ATTTTCATCCCTGT---GATCTCTG--TATCAGAGTTCTATCTGGGTACTGATGACTTTTGTAAGTAG-TTGACCTGACAACCCCCACCCCACCCCGCCTCGTTGGACTATAACCTCT----TTGTTTCTGTCTCTAGATTACCTTCGACAACACAGCCCACAGTGGGAAAATCAAAATCTATCTCAACAGCGAGGCCAACATCGAAGAGTGTAAAAACATGAACATATCTGGGTCTAGTAAGTGTACCGTTCAGCCTGTTGTCTGTGGGTTA-GAGGAGGT-------------TTGGGGGGCTTAGGGAACCCACGTGATTCGTATGGAAGGTGG--TGGGGAAAACGTTTCAGAAAAAC--AGTTCAAACGCTAG-TCCTG---AGCGAG-------------------TGGTCCAAGTCAGCAAGTGTTTAT---------TGTTTCTTGAGTCAGTGGTTTA-----------CGCAGTTCGCctttgcagcaagatggcctgggtttgcattctggttctgtgagccacggctg-gaggcttggacctattgcttggcctctctgtcttagcagttttctctacaaagcaagagcaatggctgtact-----tattgagggggt---------tggtgCCGAATGCTGGGAGCAGA--------------AGTCATCAGAGTTGCTCCGC-AACTCAT-----CAGCGAGGAGAGGCCTTAGGGAGGGACAT--CTATGTGACCAGATCCTTGGGGTGCTATGGGTAGCCATAGCC--------------------------------------AGGGA-----------------------------------AGTATGGAAGG-------------------TCTGAGT---------------------------AGGAAGGGAAATGATCATTTTGACCGAGCTC-AGTGGG-----AATCCTG-----AATTCTCGGAGGAGGTATGTTCTGATCCAAGCCTTGGACAAAGGAGAAGAGTGGAGACCTCAGGGTGC--ATCTTGAATA------AACACGGGGACATCTCCTCCGTCACCCGATGGTCCACATGCTTAAATAGCCTTG----TTGAGCTAgcgatga-catcatgtactgtaatctcagctatgcaggaagaaactgggagattttgacttcaagaccagcctaaaccactttgtgggggagggtgttcctgtctcaaaagaGGAGTGTAAGATATGTGCATCCTGCTTTGATTATTAGTGGTCAGGGCGATGTCTCTGAGTGTGGTGAACTGGCAAGCTCCGTTTACACGAACTCACTTGGGCCAGATGACCAGAAAGACAAATATGAGTCACGTGGTTTTTTATTCCAACAGGTGACTCATTCCTTTTCAGCTGTACAACGGCTGATGATTTCGAAGT--TTTCTCTTTTTTTTTCTAGCTTTGGTTTCAGTCATTCCTCTAAAGGAAGCACACAGATTGGGTTCCTGATAAAATGGATTTTCTATTTCGCAGCAGATA---------CTCAAAGACCAGCACCATCAAGGCAGTCCTCAG--GTCCAAGTAAAGGCTGAAGCTATGTCTTGGTGGTGTGGGGGAACG---TAACCTTTGCCATATATAAACTGTGATTTGCAATAGTCACTGTG-------AGACTGGACG----------TGTGCCTCATGGCTCCCCAA--------------------------TGATCCTCTCACCACGCATGCCAGAACGGAAGAGCTCTTGCTCCCCCCTGTGGCCAAC-AGAGAGAAGCAGACCT----------------AAAATGTGATTCTTACGGCCATGTCTTAGAAACTCGACCTTATCACTAGGAAGACATGAATTTAAAATAAATCAAGGGGTTTTAAAAATCATTAAAAATATGAGGTTTAGAAACCAGTTTAGAAGATGGGTTGTGCTGCCTCTTCCATTTGAA-----------GCCGTGGACT---GAGAAGCTCTGCCTAAGAGAGGCCAGAGGCGCCACCTGGTGGGCACTGGCCGCTGTTGTCCAAGTATTCTGATGCTCTCTTCTCACCCAGCTTCCCAGCTGCTGCTTGCTTCCTCTTGGCGTTATCTACAATTATCCACATCTCCTCAAAGCAAAAACCGGTAATGTCCACGTTCACAGACATCTGCTTCCCAAGGAGCCTTCTCTGAGTGCGCTTCTGCTCTCCAGAACTTATATTTTATATACTATAGTTTATAG--CCAGCCACA--------CGAGGCTTTAGAAGAATGGGGTGGGCAGGGCTCCCTCTGATGGAGATGTAATGGTATATATTTATTGCAGAGCTGACAGTTAGTAAGCTTGGATAGCCC-GAGTCAGAGTTCCTTAGGCAGATGGTGGGAGAGCGT-CTGTGCA----CATCAGGTATCTGGGAGGGTGGAGTGA-GTGGGGTGTGCCATTACTCAGAGTGGCAGGACATATTTCTGAACCAGTGTTTTCCAAACTCAGATTTGGAAGAGCTTTCTGAAATGCAATATGGCTTCAGTGGGGTAAGCAATCTAtggctgctggatgttcccaac
s HiC_scaffold_1 132650797 2459 + 233722169 ATTTTCATCACTGTAGTGGTCTTTGGCCAGCAGA-------CTAAATGccactgatttttttcaacaGATTGATGTAGCAAATCCTACTTT--------CTGTTGGGCTAAAACCTCTGAATCTACTTGTGTCTCTAGATCACATTTGACAATACAGCTCACAGTGGCAAAATAAAAGTCTATTTTGACAGTGAAGCCAACATCGAAGAATGTAAAGCCTTGAACATATCTGGATCCAGTGAGTATGCTG-TCTGCTTGCGCTTCTTGGATTATTGGGTGGTTCTTAATAGTTTATTTCGGGATTTGGAGCATTTATGTGGCTGATTTGGATGGTAATCTTAAGTCAGGTTTCCAGAAAACCGTATTTTGAACATTAGATTCTGTAAAGCAGGTCCCAtggatttgttcttttgtttaatttcagcaacTGTTTGTAACACAACACACTTCTTGGAGAGGTAGCATGACTTGGTGGATAGGAACTCGGCTTTGGAGTCACACTGCCTAGGTTTAGATCCTGGTTCTGTTTACCATGTCTGTGATGCTGGG--CAATTTCTTAACC------TCTTAGTATCTTTCTCGGCAAAGTATAAGCATT---TGTCTTCAGAATATTAAGTGAGTAATATTTTGTAAAGCAAAGTACTGAGAACAGAAGCTGGTGCACTTGAGTTACTGGAGAGGCCctacaaacctataatcccagcacacaggaagctgaggcaggaaggttgccatgagttcaagacctaggcctgggctatatagtgataccctgcttcagaaagcaaaaagcataaaaaagaaagaaaagaggaaaccaccctaaggtgaaaaagaaaaataaatgccttAGTGAGGAAGACTGATACATTAATAAAATCTCTCAGTATGTTACAGGTAGGATGAGAGAGTGGAAGGAAAGCAAGAGATAAATGTCACTGGGGGAGAGTGGGAAATAAAATCTGCAAGTGATTCTTGGAAAAGGCGTGTTGTAATCTGAGCCTTGGACAGTGGAGCAAGATCAAGGCTGCAGAGCCCAGATCTTACTTAGCCTGTGACACTGGGTCAT--------TTATCCAATTGTTT---TGTAAAAATACCCATTAATCCTGGGTTTAGAATGAGCTTTGTAGACCCTGATCTATGCTTTGTGG---GGGACTGgaa-------agttgaagcccagcctgtgagatttagtgacttagcaagaccctgccttgaAATACAAGAttgaaaaagg----------actggggattagc--tcagtgcaaaggccctgggt-----------ccaatccctagtaccaccaa-------aaaccaaa--accaagcaaaaaaa------cccccaaaacttcCCTTTGATCAGAttatcaaaatgaaataagatgTAAAATATCTGTGGTTTTTGAAGtggtttcaaaattttttttaaatttcagttttagtACTTCCTCTGA--TCAGAatgcagttttgttttctcttgaaa-GTATTTCATCTCTC-CAGCAAACAGCTCCTCCTATCACAGACAGGCAC---AGAACCGATGCCTAGCCGTCTATCTATCGGGGGCAACTAT---TTGGT----TTAAAAAATACACCAACCCTTGCT-TATATAAAATGTGATTTAGGATAGTCATTATGAAGAGCAAAACCGCCCGAAGGAGCTGCTGGGTCAGATTCCTGCCCAAGCAGCGGTTCCTTTTTTGAACTTTGGCGGTTTTCTTTCCTGG---GCTCAGACCAGGGAGCTCTGGCTCCCTCCAGTGGCTCCCAAGAGGAACACAGCCCTCCCTGACCTGGGAGGAAAAACACTAACATGAACATCCTGTCTAAGAAATCCGACTCCATCACCC-TAGGATacgaatttaaaataaaatgaggagaTGTGAAAGAC-TTAAAAGGCTGAAATTGAGAAGCCAGTTTAGGACATGGATTTTCCCCCCTCATTCCTGAAAACCGATGAGACTGCCCTGGACTTGGGGGAAGTAGAACC-----GGGACCAG-GGCGACACCTGGT-GGCTCTTCATGCTGTTCTCACCATATTCTG-CAATTGCTTCTCATGC-GCATCTTTGC-GCTCCAGGCTTTCCTCTGCCTTTGTC----ATTACCC---TATCCTCTTAGAAATATGCAGGGATGTCCCTTTCTACAAAT-CCCACGTCCCGATGC-CCGTCTCCAAGTGCGCT-------------GCTTAATCTTTATCTACGGGATTTCATAAATACGGTGACAGGAGAATGAGAGGCTGGGGAGGAAT-TAGTGGGCAGGACGCCCCCTAGTG-----GCAGGGATGTAAATGTGTTCTGGACCAGTGGGTAAATAAGTTTGCAGGGCCCTGGGTCTGAGTCCTACAGCTGACCCGTGGTGGGGTGCGCAGTGCAGGCTTCTCAGGCCTTTGGAAGAGCTAGGTGAGGTGCGGGATTTCCCTAGCCAGGTTGGTGGGCCCCCTTTCTGGACTGGTGTTTTCCAGAGCCAAGTTTAGGAAATGTTCTTATAGGACAACATAGTTTGAACAGAGCGAAAAA---ATAGTTTCTG--TGTTTACAAC

a score=4855
s chr3           146176490 127 + 160039680 CTCTTTGTTTCTGTCTCTA--GATTACCTTCGACAACACAGCCCACAGTGGGAAAATCAAAATCTATCTCAACAGCGAGGCCAACATCGAAGAGTGTAAAAACATGAACATATCTGGGTCTAGTAAGTG
s HiC_scaffold_1 132584359 129 + 233722169 CCCCTTATTCTTGTCTTCACAGATAACATTTGACAACAAGGCTCATAGTGGAAGAATTAAAATAAGTTTAGATAATGACATTTCCATTAGAGAATGTAAGGACTGGCACGTATCTGGATCAAGTAAGTG

a score=72369
s chr3           146179834 5935 + 160039680 [encoded data, 6431 characters]
s HiC_scaffold_1 132657100 5599 + 233722169 [encoded data, 6431 characters]

a score=4423
s chr3           146180151 125 + 160039680 TCTGCAGCTCAGAGAAGCACTCACTACCTCCTGGTGTTTGATGTGTTCGTCATTATGATCTGCCTGGCATCCCTTATCCTGTGCACGAGATCCATTGTTCTTGCTCTGAGGCTGAGGAAGGTAAG
s HiC_scaffold_1 132586699 125 + 233722169 ttttcagtTCAGAAGAACACTCATTACATGATGATCTTTGATGCCTTCGTCATTCTGACTTGCTTGGCCTCACTGCTGCTCTGCGTGAGATCGGTGATTAGAGGGCTTCGGCTTCAGCAGGTAGG

a score=10717
s chr3           146183445 353 + 160039680 TGTTTTCTTTTCCCTCCTCAGAAGCTCACAAACTATGACGTGTGCAGCATCTTGCTCGGGACGTCGACGCTCTTTGTCTGGGTTGGAGTCATCAGATATCTGGGTTACTTTCAGACGTACAACGTAAGCTCTCAGAAGTGCCATTGTGGTTGACACGGGCTCCTCCTCTGAGTTCTGCCAGCTGGTTCTCATCCTCCGA-GACGAGC-------------TGTCCGCGCCTTTGTCTTCCAGGTGCTCATTTTAACCATGCAAGCCTCACTGCCCAAAGTTCTCCGGTTCTGTGCTTGCGCTGGCATGATCTACCTGGGGTACACCTTCTGCGGCTGGATTGTCTTAGGACCGTACCACGAGAAGGT
s HiC_scaffold_1 132590172 345 + 233722169 tgttttcctttccatt-tcagaGTCTCACAAGTTACGATGTCTGCAGCATACTTCTTGGGACATCGACCATGCTGGTGTGGCTTGGAGTCATCCGATACCTGGGTTTCTTCGAGAAGTACAATGTAAG------GAATTCC----GTGGATTTC-TGGGCTGTTGCTAT--------TCAGTTACTGCACTGCCTCGGATGAAGGGCAAAAAGATTTTGATGACCTCTC--TTACTTTGCAGCTCCTCATTCTGACCCTTCAGGCAGCGTTGCCCAATGTCATCAGGTTCTGCTGCTGTGCTGCTATGATTTATTTAGGCTATTGCTTCTGTGGGTGGATTGTGCTGGGACCTTACCACGATAAGGT

a score=15847
s chr3           146185872 512 + 160039680 ATCAAGAACAGCTGAGCATCGAGGCCAACGTTAT-TAGCACTTTTAGAATCGCAGCAACCTTGAGTGTGGACGCCA-----TTCACCATTTCCAACACACAAGCCAACAGAAGACTCTAAAGGGAAGGTGTCGGGAAAATTCTTACTTGGTGCGACCGACTGG-----AGTCAAAGCAGCAG-ACTTTAGCTTCCTGCCTTCCTGTTACACATCTGATTTCAGCGGTTCAGCCTCAGGGACCCAAC----------CGTCACATCGATGCCCATTTCCAGCACTAATGGACTTTGGCACTGTGCTCCTTGAAAACGCCTAGGTACAGGGAGCTAAAGACAGCGGATCGTCTTTCACACTGCATTCTGAATTATTAAGCACGCCTCTAATGTGGCTTTTACATTTCCTGTCTTCAGGGGACTTTTTTTTTTTTTACTATGATGCATGAATAATAGTTTTGtattatctccattttacaaatacgaagaacaagccactga-----taaatcatcgcactttgctaaggccaGGGGCAAAA
s HiC_scaffold_1 132664179 515 + 233722169 ACCTAGAAAAGCTGAGCATTATCACAgacattttctagttttcttaaaATCACAGCAACATTGAATGTGAAAGTTAAGtctttca----ttaaaataaacaa--caacaacaaactgtAAAGAGGAGGTACCAGGGAAACTGTAATTTGGTACTACTATTTGATTGATAGCCCACATCTCACCATTTTAGCTTCCTGTCTTCCTGTTCCACATCTAATTTCATTGATTCCACGCGAGGGAGTAAAGGTATGAACAGAGTCCTGCTGATGTTCATTCCCAGCAGTAATGGACTTCGGCGCTGTGCCCTTTAGAGATGTCTGGGCACAGGGAGAAGGAGGCTGTTGATGTTCTTCCAAACCTCA-TCTGAATTATTAAACATTACTTTAATGTGGATTTTCCATTTC-------CAGAGGAGTTTGCTTT------CTGTG----AGAAATAATAATCTTGCACAGTTCCCATTTTACAAATTTGAAGATCAAGGCATTGAACAATTGAATTGTTGGACTTTTTTGATGCTCTGAATAAAA

a score=27700
s chr3           146187181 1662 + 160039680 aagaaaatcagctaGACATG-------GGGTCTTGCTGT-GCCTAAGAGCTAG---CCAATGTGCTACCCAACTGAAGACATTTTAGCTCCCGCCATTGG--------TTGCTTTTTTTATGCCCATGTGTTGGAATGTGGCCACTAAAACAACTTTGGTTT-TAGTCTATTCTTGTGGTAGAAAGATGACCCAGTATGC---------------TTTATCAGGTCTTTGCTGTAAT---CTGGCGGGCTAGAGCAGGTCTTATATGTACACAGGAGGGAGAGGTATAATGGTTATAAATATGTTAATGTTGAGACGGGCATTGTGTCTATATTGAGCATGT----TCACACAGGAAGCTAAGGCATAGATCTGATAGGTACTGACCAACAAGCTACCTGAAGTTCTGAAACAGGAAGCACACAGTGTTA-GAGGCCTTGAAATGAAAGAAAGAGATTGACCAGGTTACAAAAGAACTGACGAGCTCCAAGATGCTGTT--AAAATGTCACTGGCATTCAGAGAAGCCAACTTTAGCCTGATTACTGTCTTAAGC----TGGTGACAGTAGGAAACAT----GCCAGGAACTTCCCGTCTAACTGTTAAGCAGTCCGCATACTTACTGCTTAAGAGATCTGCTCAACTGGATGCTTCCTGCAAGACTCCAAAGAGAGCAACATTAGCCTCGCTCTGCAGAG----TGACTTTGTGAGGGCTAGAGAGTGATCACTGTTGGGACATGTTCTCCTACCCGCATCCTGCCCGTCTCTTTCTAGTGTTAAGACAAG---TGTAAGATGTAAGCTTTGCTCTGCAACTGAGGTATAGAAA--TGCATTCCAGGGCATTTAAAGGACAGCCCTACCACATTCTCAGAGTTCTTGCTGAT-------AAAGAGCAGGGGCTGCAGCTGACAGAGCATCCTATCCCCAAGAAGACTTTGATTTAGCTCTTGAATGTTGACTTTGATGCAGAGGGAAAGGAAGAATACATGAGAGGAAGAGACCAGATTCTACAGGGAAAT------------TTGCG----GTGGGAAGAGCTAAGCATGG-ATATTAATATTGACAAGAGGCAA-CTGTGAGGCAACATG--GAAGGACTTACTGGAACTTTCTGTGCTTCTGTTTTCAGTTT--------------TATGGCCATACGCAAGAGAAATGTCTTTAAACCTATCTTT-ATGAGATTT-------AGTGAGGATTGGATAAA---GAGACGATCATGTCAAAGACTTCCCTAGA-----------------------AAGGAATGACATCAGAAAGGAAGAGGGAGGGAGGCTCGTATCATGAAGCACACGGGCTTTGGAGGACCACAGAGTAGGGAGATGGACTGGCCACACCAGCATAGATTTGAATGTTCTCAATTATTTTGGTACAGATGTTTCTTTTGGGTGGAGGTTGGCATCAGTTACAGGAACAGAGGAATTTGGAAGGAGAGCCCTTTTCTTGGATAGGGCGATGGGAGGTTCACTTT-CTATCTGTTACATGACAGCACGTCCCTCTTCCCCCAGGACGATGTCCTAGACACTTATCAAGGCCTTGGATGTACACAAGGCCATGCTCAATTAATGGACATAGAGACCCCAACCCCTAATGTCAGAAC-AGATAGAAAACTCTACAGTAACCCCTTTCATGTAT-TTCTGAAAACCATGCTGTCTTTGGTTTATTAAGTCACT--ATTACCCCAGCAGTTTTTCATATACATCCTCTGCTTACACCCCTGGCTCCAGGGACATGTTTATTAAG
s HiC_scaffold_1 132665899 1687 + 233722169 AAGAGAAACAGCAATACCTGCTTTCCAGGGGCTTCCGGTCTCTTGAGGGCTAAACCCTCTTGATCCTTCTAGCTGGAAACACATTAGGACCTTATGTAGgcaatattttaacttcttttctg---------tgcagtttggCCACTCAAA-----TTGGTTTAGAGCCAATTATTGTACTAAAGTGA-----CAGTTTGTGCATCAATCACttaatttatttggtttctgctttaatattttgcTAGAGTAAAATAATTCTTATGCGCACATAGGAAAGAGA--TACAACAGTTATGAATAGCATTATGGTGAGATAGATATTGTGTCTGTACTGCTAATGAGTAACTATACAGGCAATTAAAAAGTAGAGTTGGTAAGAACTAACCAACTAGCTATTTTCAGTTCTGAAACTTGAAGTACAGACTCCTAAGAGTTATTGAAACTAAATAGAGGAATTggccagatttcaaaagaaa---------ctgAGATGTTGCTTCCAGTTATAACTGATGTCTATGGAAACCAGCTTTAACTTGA-----GATTGAAGACTagtggagaaaatggaaaatatttatatgGGGAACTTCCTGTTTGACAATTGAATAATCTCTATA---------TGAAATTTTTGTTCAACTGGATCTTCCCT--AGTTCTCTACACAGAGTTACTTTAGCCCAGCTCATTAGAGCTGTTGATTTGGCAAAGGCATGAGCATGACCACTCT--------------CAAACCGGGCCCTGTCAGG-----TGTAGCCACAGGACAAGAAGTGTAAGATGGCA--TTTGCTGTCCACCTAGGGTACAGAGAAGTGCACAGAGAAGCAGTTAAAGTTCATTCCAGCATTACTCTC-TAACTGTTGCAGATTCAGAGAACAGAGAAGGGACCAGAGCTCCCAGAGTAGTGTATCTTGCAAAAGACATTGAATTAGCCCTTAAATATTGA----GacacaacaaaggaaaaagaatataggagatgaagagaataaatccacgAGGAAAAGACTTAGAAATGGCTGCGTGATGTGGAAGGAGACAAGCACAGCATGTTGGTATTGATGAGAGAGACTCAGGGAGGCCCTAGGCTGAGGAGCCGACTCCAGCCTTCTTGGTTTGGAGTTTTACTTTGAGTCTGGACATTGTATAACCTTAAGAGAGAGGAGTGCCCTGAAATCCATCTtttatgaagttttcattttcctgcagCTTGCTTGGACTGGAGGTGAAGAGGTTAGAGACCTCCTTGGGGGTTTCTGTAATGATTCAGTTGTAAGTGTTGACGGCAGAGTGGATAGATCAGAAAAAGATGTTACAGGAA------------CAGAAGACT---GAGAAAGGGGA-AGATTAGTGA-------------TTAAGTATTTT--ACTATT--GGCACAGATATTTCTTT--GGCAG-GATTGGAATCCATGAAAGACAAAGGGAAATGCGGAAGGGAAGCCCTTT----GGCTCGGGTGGTCGGAGGTTTATTTGATTGCATGTGAAGCAACAGCACAAC-----TCCCAAAGGAAGATGCCTCAGACACTCATGGAGGACTTGAATATCCCCAAAGCCACAATGACTTCATGAACACATGGGCCCTGATCCTTAAGGGCAGAACTGGGTTCAAAACTGTGCAGTAATTCATTTCATCTATGGCCTGAACACACTGTAGTCTTTTGCCAGTTAGATCCTTGAAGCTCTTTGCGAGTATTTTATACTCAGCTCATGTTTCACCCACTGGCCCCACAGTCACGGTCATCAAG

a score=20580
s chr3           146190179 487 + 160039680 CAGCTTCCCGC-----AGCCACTTGCAGCTCTCAGCTTCCTATGGTGCTCA--------GCCTCAGGGGTTCCGTTGCATTTCTCCCTTGCAGTTTGAAAACCTGAACATAGTCGCTGAATGCCTGTTTTCTCTGGTCAACGGCGATGACATGTTTGCCACGTTCGCTCAGATCCAGCAGAAGAGCATTCTGGTGTGGCTGTTCAGCCGCCTCTACCTGTATTCCTTTATCAGCCTATTCATTTACATGGTCCTCAGCCTCTTCATCGCGCTCATCACCGACTCTTACCACACCATTAAGGTAAGGCACGACCAGTGTTTGCTGCCCAAAAGCATCATAAACTTTGTATGGATTGGAGCACGAGAAAAGGCTGTAAT-----CTTACGGAAATACAATTTTATTCTTCTTTT--AATCTTTTTAGAAAAATAGACCTTGGTTTGTTTTGGTCTGACGACTAATTTTAAATATGTGCTt---gtcttagttaaggtttctatcactctgat
s HiC_scaffold_1 132668702 484 + 233722169 CAACTTTACGCTAACAAGCTAGTGGCATCTCTCTGCTTGGTAGGATGCTCCTTTGTCTCACCTCAGAAGCTAATTTCTGTTCCTTCCCTACAGTTTGAAAATCTGAACATAGTCGCTGAATGCCTGTTTTCCCTGGTCAACGGTGATGACATGTTTGCCACCTTTGCTCAAATCCAGCAGAAGAGCATCTTGGTGTGGCTGTTCAGCCGTCTGTACCTGTATTCCTTCATCAGCCTTTTCATATATATGATTCTCAGCCTTTTTATTGCACTTATTACAGATTCTTATGACACCATTAAGGTATG----TACCAGTATTTGCTGCCAAAaaccaatgcaaattctgtatgGCTTGGAACGTGG--------CGTAATAGTCACATAGGATATTATCGTTGTATTTAGGTTTTGAGATTTCTGTAGAGAGCAAAACTTTTAGATG-------CTAGAAACTAATTTCAAATATAGATTTAGGATCTTA-------TTCCTGTTAATCAGAT

a score=23416
s chr3           146191768 957 + 160039680 GGGTGCTAGGAGTGTTTTATCTGTTAGGAAAAATCTACCC-CTGTCCCACTCTGTGGTCATCTTCCATGTAT-GTGAATTATGTCCCTGTGAGATTCTAGGTGGACACTGTGCCGAGTGACAA---CTGCTGGCCTCATGATTAACACTCTGGCTTTCTGGTTTGGATGATTTCTTTCA-ATTCTTTTCAACTCACTTCTCCCCCTCTCCCCTGGCTTGTTTTCTGGAGTTTTCCCTTCCATTGTTCTCAGTTCCCCCCTCCACCGCCACACTTAGCTGTTCTGGGACGGACAGATTGTTCTGGGACTGACAGACTGACTCTGCATTGTTC--ATAGCACTCCTTGGATCTGAGCTAGCACCC---GGGAGTTGCATTTCACAGAGGCGGGGTTTGCTTTCTTGACAAAGAGAACCATTGCTCATGCCCTGGACAGGAGGTAACAACAGCGCTGTCTGCTTTTTCAAAAGAAGTACCAGCAGCATGGGTTTCCTGAAACAGATCTGCAGAAATTCCTGAAGGAGAGCGGAAGCAAAGATGGGTACCAGAAGCAGCCATCGGCCTTGCTGTCCTGCCTCTGCTGTCTGAGGAGGTCAGTGTTG----------TCTGTGGAGGGAAGACAGTCATCTCAAC-------TGAACTCTGCT--------------------------------------------CTCAGAAATCTGCCGGTGGTGGGAAATGGTTGCTCTTTTTTTTCTCTCCTCCCACACAGGTTTGTTTGAGAAATACATTGTTTCTTGTAAAACAATGTTCCATACCACAAGGTTTGTGTAGAAAGCTCCATGACATCA-CTGAAACTTTTAGAGACCTTGTGGGAACCCT--AGGAGGAGATGGACTGTGACC--AGAAGCAGGAGGATGAATCTTAAGA-----GGCCCAAGGAAGAGGTCAGAGTGTATG-TTCTGAAGGTGCAGCTCC-AGACATGGCAAAGGCATTTTCTCCCCTCACAGGATGTGGAGCAAACCAGTTCCTTGAACAG-ATAGGA
s HiC_scaffold_1 132669734 975 + 233722169 GGGCCCTAGGGGCTTTGTGTCTGCTTGGAAAAATCTGCCTTCTGTCTCACTCAGCAGCCACCTTCCATAAAAAGTAAAGGACGCA-----GAGTCGTCCATTTGGCAGTGTGTGGATTGGAAGTCTCATCTGGTCTTGGTAGTGGCTCTCTAACTTTAGACTTTGAACTATTTCCTTCATCCTCCTTTGGGCACACC---------CTTCCAAGACTT----TCTGGAGCTTTCTTTTGGATTGTTCTCTGTTCCCATGGTGGCC--CTGGCTTGGCTGTTATGGGAC------------------TTGACAGATTGATTCATCATTGTTTTAATAGCAGTTCTTGGATCTGAGCTAGCACTGTGGGAGAGTTTTGTGTTAGCCAAGGTGAATTTGGCTTGTTGTCCCAGGGA-CAGTTTCTCAT-------ACTGTATAAAATAACAGCATTGtgtggttttt-aaaagaaatatcagCAGAATGGCTTTCCTGAGACAGATCTGCAGGAATTCCTGAAGGAATGCAGCAGCAAAGAAGAGTACCAGAAAGAACCCTCCGCCTTCCTGTCCTGCACCTGCTGCCTGAGGAGGTCAGTACTGTGTtcagtctttttttgtgtgtgttcagtCTTTTTAATGCTGAGGTGAACTCCTCTTTTGCCGTAAGGAAGAGTTATCCCAAGGTTAATGAGATTTTCAGCCCTGAGATTGGCTTATTGTGGGAAACAatt-caactttctttctttcctcccacaAAAACTGACTCTAGAAATGAATCATTTCTTGTAAAACAA----------------GCTTTTGTGTAAAGCTAAATGGCACCATCTGCATCCCTTCGGGTTGTCAAGAAACCCCTGCAAGAAGGCATGAGTGATATCCTTAAAGTCAGGAGGCTGAACTCTAAGATGGATGGCCCAAGGAAGAGGTCAGAGCTCTTGTTTTTGGAGGCACAGCTCTGAGACTGTCCAAAGCAATTTTCTTATTTCACAGTATGTGGCCTACATGA---CCTTGAGTAGAATAGGA

a score=18053
s chr3           146194701 967 + 160039680 AAAAATTCTTAACTTGACGTTCTCTTACTC-CTTCATCCCCTTTTCTGTTACAGGAGAAGAAGCAATGACCACTTGATTCTCATTGACTAAAACCTTTGGCTGATGTCAGTCAAGTCCAGATCCCTTTATGCTGAGGTCATTCAGAGAGACCCCAGA-----GGTAGCAGCAGTCGGCTCAAA-GATTGTCCTGCTGAATTGTGGAACCAGAAGGAGGGGTGTCCATGAGCT-GCTGATCAGACCTGACATTCCAAAGTTACTTTTCATAGACA--TGGAGTGTGAAGAGTA---------AGCCTCTTGTGAGG------------CCAGC-GTGGCAATGAAATTCACCAGGAGTCTGGTCGTTTGTGACATCATAATGTTGAGATGTAAAAAGAAATATTCCCACTTCAGAGTGTGTAA---GCA-ATATTTAAA----CCCAGATAAAGATGCATGCTTATTGAAAAAACAAAGATTTGTTTCAAAACGTGACACTTGGATTTGAAGACAT--TTGTTAATTTATGGTCTGCACAGAAATAAATTTGCTTCCAAA--CCAAATTAAG-----ACTTGAAGCTAGAG----------AGTGGTAAGCCACTCAGTTCGTGACTGGTTGGACTGTGAGCTTGCTTCTTCAGCAAGCACAACACCAGTGTCTGTTAGCACAGTCAGCGGGATGA-----AAGAGCACCTGGCTGTCCCCTCAGGTGAGCTCTCCCTGGACTGGACACATGATGAGTGA---GTCACCCTAAGCTT--GGAGTGGCCATCTGTT-TCACAAGTCAGCTCCATTGTGGTGGGGATTTGCCCTTGTCATGGAAGGAAGT---GTAGATTTTTCATTAAATAAATTTATTTTCACGATGTTGCATTGTACTATTATTG--TGTTACAATGCGATGTCTCTTGACAGTCACTGAGTGAGAGTTCCATTTTATACCATCCCTCTTGAATACTTTGTCCACCTGAGAGATCCGTCATTTTTAAACAAGTGGTGAAGGAGCTATGAGGGTTGGTCCATA
s HiC_scaffold_1 132672103 988 + 233722169 AAAGAGTTTTAAGTCTttgctctcttcttttcctcctcccccaTCCTATTACAGGAGAGGAAGTGATGACCAGTTGATTCTTATTAACTGAAGTTCTGGGAAGACA------AATTTCAGGCCTCCCTATCCAGCTGCAGTGCCGTGGGACCTCAAATACCCTGGACCAGCACTT--CTAAAAGGATTGTCTTATT-AATTGTGGaccaagaaagaggaagaaacgtCAGCTGGCTGACCATGACTGAAGTTTTAAAGTTCCTTCTTAtataaatttggagaaaaaagaatagaagaccACAGGCTACTGCTGGGAATTAGTGCAATTGAGCAGTGATAATGAAATTCTTTGTTAGTCTGCCAGTTTGTGACATGATAATAGTCATACATGGGAA-----AGTCGCATTTCAGAGTGTGCAAAACGCAGAtgtttaaagttttatatttaaagatatgTGTTTATTG-TCAGGCAAGGATTTGTTTTAAAA-GTGATTCTTGGGTTGAAAgactttcttgttattttttgatttgcaCAGATGTGTAGTTGGTTGCAAAAGCCATTTAAAGATCACATTTAAATCAACAACACTTTTTGCAGTG----GACATT---TTCCCCACCTATTTTCCTGTGAATTTTCTTCCTCAGCA--------------GTGTGCGGGCACAGTCGGTGGGCTGACTTAGAAACACACCATG------TATCAGGTGCGCTGACTTTTGATTGGACACA-----AGTGACATGTGGCAGTAAACTGCAGTACTTGTCATCCGTTGTAACAACTGATATCCACTGTGCTGGGCACAAAAGTTTGTCAAGCAAGGAAATATggtatatttttccttaaataaatttatttttattttactatattgcattattagtatttattaaaatgtgatattGCCTAATA-TCTATATATAAAAATTCAGATTG----CATCTCTATGAACTGCCTGGCTTACAAAAAGGATTTCTAGTTTTCTTAAAAGCAGTGAAGAAGATAT-AGATTTATTTCATA

a score=10975
s chr3           146196443 702 + 160039680 TTTCCTTTCATTTCCTTTTGTTC-GGTTGGCTCCAATGCTTTCAGGAAGAAAAATATTTTTCAAGGTTACC-------ATGGAAACATTGTTTCTTTTGCTCTTAGTCATTTTGAACAATGGCGGCTTTTCTCACTGTGGTCTCTTTCCCGAGTTATTGAGGATGTAGTAGGGTAACTGCTGATGGACAGGTCTGGGACAAGCC-----CTTTCTTCTCTCAGACCTTAGTTACTTCACTGTGACCGAA-------GATACA-ATCTTTTTTACCTTTTATTTACATTCTGAAATCGCTACCCCTTGTAGAAATCACCTCCTTGGCTTACAGTGACACAGCCAAAGCCACACACAGTACCCTGAGGTAACTGACT--GGAATGGCAGAAACAAG-------CAGAGTATTTGGGCGC-CTTGAA-------CCCCACTCATCCTGTAGCTTTGGGGCTCTGGACAAGCCACGTTCCGCC-----CTGAGGTGATGGTGATAAAT---------CTGCGACTGACCTTTGGCTCACAGCTCCTGCCGTGAACTCTGGCACTAGAGTGGACCTTGAGCC---TCTTCCCTCCCATCCTCTGCAGTGTTTAGACGCAGATTCCATG--------CAATGGTGCAGAC----AAAGCATTTGCTTCTGTAGCTAGTCTATCTGGGATCGTCTCCA--------------------TCTTTGGACAGTACACAGTGTGTT-TCCATTTCTCTGT-----GTGCACAATG---GAGAC-TGAAACTTAAAAGAGTCAAAGTTCAT
s HiC_scaffold_1 132674300 786 + 233722169 ttcacttttatttctttttactccaGCTGGATGagacattttcaggaaaaaaagtcTTTTCTAAGGTTACTTGCATCTGTGGAAacattattttcttccctttcagtaATTTTAAACACTTATCACTTTAACAACAGTATTATTTGAACCATTTTATACAATTTCTCATAATT---CTGCTAATAGATGTATTGGGGACAAACcatgttctttcttttccttggccTCCATTTCAGGAGTTCGACATAAAAGTTAGGAGACATGTAGTCTCTGCCTACTACTGTCATTCTGGGCTCTCCACACCTTGTAGAATTTACCTTCTTGGCCTGCAGTAAAACAGTCAAACCCAGATGTGATGTCTTAAGTT-GCGGACTTAGGGATGGTAGGAAAGAGATGGCTATGAGGCATCAGGACACACTTGAGTTAAAATTCCAGCTTTGCTCGGAGCTTTGATG-TGTGGACAAGTCACCTCTTGCCTAAATTTTATTTGATGATGATAAATCTCAACAAACTGAGGTTGGCATTTAAGTCACATAACTCATGGAGGGCCCT-GTATTGATTTGGAGCTTGagccattcttttgttttgattctctGATGTATTTGTAAGGAGTTTCTATGGGTCCACATGACAGTACAGACATTGAGAACA-CCACTTCTG----CCCTCTGCTTGgg--cttttccatttttcctcccaTATGAATCTCCTTGGACAAGTCACACtctgttagtcagctttttgttCCTGGAGCAAAACACCTGAGATatataacttaaaggaggaaaagtttat

a score=36539
s chr3           146198656 1294 + 160039680 ccacacagccccccatg-gccTTCTCTCCAGTACCCCCATAGCCACTT----TGGATGTGAAGGGCTTGC-----------------GGTATGGCCAACCAGGCCCATGTCTTAGAGAAAAGGGTACATGAGCTCTGGAAGAACGGAA-CTAAATCCCGCAATGAACTCTCAAGCTGATAGAGAAA-CACGACATCGCAAGGCTGGTCTGCATGGGACTC-CTGACAGCAAACGCAGCCGCAAACAAGTGTGCAGAAAGCAATGGTCAGTGTTTCCTGTGCC-TCAGTCTCTGCAAGTGAGCTAGGGAGAGAGGGT-GAACACGGCCCTGTCACATC--CTTGCATCATAAGGAC-GCAGAAGCCTGACTTCTTAAAGACCCTGGGGAGCTGTTGGCTGCGGTGAATGGGGTGGGGGGAGGAGACAATTTATTAGTGTGATATATGTTTTCTACTTTCTAATGATACATAAATCATCCCCTGAGCCACAATACATATGGTTAAGTGGGAATTTTAAATGAAAGCCCCCACCCCACCCCCCGCAGCACTAATTGCTCAGCAGCAGCAGCAGCAGTAAATTACTCAT-CCCTGTTGCCTGTGGGTTGTGGCCATTACTCTCTCCTCCAGGTTGAGCTGATGTCCCCCAAGAGG-AATGTTTGCTCTGACAAAGTGGATTTATGTCTTC-CCTGTGAGCACAACACACTAGGTTC----CAGGGGAGAGCATTAATAACAC--TCTGGACCCTACCCTGCACA--TGTGTCACACTGCCCATATTGTCCACAGTGATAGGTCAGTGCA-TTCGGTCCTGCCTCTTGGTTTGCCTTTCGGGAGGACATCGGAGTGCTGCTATCAATATTTAATCTCCTCCCACTGTGAGATTTAAAGATAGACTTGGCTAACAAGCATGGGTGTTTCCTAAGTGGCATG-AAGGGGAGGGAGAAGGAAACATGATTAATTTAGGAAAACACTAGATAATTACATGGCGTG-GGATGGAAAATGATGATGTCATTAAGAATCATGAATTCAACACTTATGTGTTAAGCTTTAGGACCATGCTGTGCACCGAGGTTGCAAGGGATGCGTGACAAGATCACTG--TCCTGGTGAGCTGA-GTTAGTGTCCAGGAGGGCAAGGCTGGTGCACAGGCATAAAATCTCACCAAGGTGCCCCAGGAGAATAG--AGGCCATTCCTGTGCC---TCTCTGAAG------TGTAAAATGGGGAGAGGACTAGACAGGCTGAGAGCTGAGGCACAGGGACACCACTTT------------------------TGGCAGGT------------------AAGGGAACAGAATGAGAAAGGCTTGAACCTCTGAAAGAGAACTTAGTTAGGACAAGAGAT
s HiC_scaffold_1 132678029 1321 + 233722169 CCATACAGCATACTTTGAGTGCTCTCTCCATCACTTC-ATAGCCACTTGCTTTCAGTCTGCAGGGCTGTCTGGGAAtgggaagcaggagaattgtcaAACATGCT-GTTTCTTGAAGGAAGGAGTGTAATAGCACTGAAAACATTTAAGCCAAATCTCAAAGCAGTCACCCAATTTGTTAGGAAAAGCAGTGCAACTCATGGCTGTTCTGCTCTGGGCTCATTTACAGCAAATGCTGCTGCAAACTggtgaataaaaa-taatagcaaatgtgTCTCCTGCTATCGGTCTCTGCTAGAGAAATGGGATGAATGAGCAGCACACGAACATTTTACACCACCTTATCTAACAAGGACAGCAAAACTCTGACTTCTTAAAGACCCCTGGGAGCTATTGGCTATGG-GAATCA---------AGGAGACAATTTATTAGCATGATGTATTTTTCTTAGCTTCTAATGATACATAAATTATCCCATGAGCCATGATACATATggtttaaagagaattttaaatgaaagtcAT--TTTTTTCCCTAGCAACACTAATTGCT---------TAGCAGCAGTAAATTACTCATCCCCTGCTGACTGTGGGTTGTGGTCATTACTCTCTCTGTGAGCTTGAGTGGATTCCCCCCCAGAGGAAATGTTTGCTCTGACAAAGTGAATTTATATCCTCGCTTGTGAGCCTGCCATGCCAGGTCTGCAGAAGGAAAGGGTATTAATAATGCCTTTTGGACACTGCACAGTATGTTTGTGTCTTCGTGCATGTGTTATCTTTGATGACAGAACAGTGGAGCTTGGTCTTCACTCTTGGTTTGCCTTT-GGGGGAAAATCAGAGTGCTGCTATCAATATTTAATCTTCCCTAGTTGTGGGATTTAAA----------------------GGATGTTTCCCAGGTGCCAGGCAAGGAAAGTGATAAG----TACCATCAATTTC-TAAAACACTAAATAACTACGTAATGTGTAGGAGGAAAATGATGGTGCCATTAAAAACCACTAACTCAACACATATTTGTTGATTTCCAGGGCTATGCTAGGTGTTACAGATGCAAGCAATGATTGACAGGATCTCTGCATCCAGTAGGGCAGACAACCGTATACAAAA---CGAGGCTAGTACA-AGGT---GAATCTC----AGGTGctaaagcagaacagaaagatgatTCCCTTGCTTGGTTACTTAAGGTCTCTTGTAGAC----------ACTAGACAATGGTAGAACTGAGACACCTGGAGAATACATTATGTTGAACCAGATAAACCTGGAGTGGTAAGGGGAGGAGGGGTTTGTTTAAAGGCAACACAATGGCAAAAGTTTGGCCATTTCACAGAGAACCTGGTTGCTTAAAAAGAT

a score=18391
s chr3           146213049 659 + 160039680 ACACTGATAACGGCTTAGCTGCTGAC-TTCTGTTCCAAATGAACC-----AAA-------GAAGGACAGCTACG---ATGGTTCCCACAGCACACCCGTGTC--AGTCTGCTGGGCTATTATTCATATTACATAAGAATATGAAATGATAATTTGGCCGGGATCCATCAGCTGCAACTGAAAAAAACCAATCAACCCCAAGTCAAGAATGTCAGGATGGTGTTACAACTTTCTGTTGCAAAACAGGGAAAACACTGAGTACATAGAACGCAGAACCCTCTAGCAGGGTTTATTTACAAGTATTTCCTTTTTCTTTTTTAGGTTTACCAGGATAAATATTTGCACAGCTGAAAGTGTTGCTAGTATCAGGTTCTTGTTGATTGCCTCAGGCAAGGCAAATATCTAGTCGTGGCCTGAGCAGGGGGCTCAGGGAGCAGGTAGCTCATTGTATAAGGTATATGTTACTGTTGTTCCGACATGGTTTCGCTTTTGA----------------AGCTTGCAGCTGTCACATCC-----------ATCATTCTTTCTTGACGCTTCCTGGTGTGAT--GCAGACACTTCTTAGGCTGAAGAAGACGCAGGCAGGCAAATGCAACACTGCATTTGT---AGTGGACCTAGGATCTCTCTTGTATCTCTTATTTCTGACACTGAC--ATAATTTCACTTTGTCACTCTCTAGGCAAACT
s HiC_scaffold_1 132688784 657 + 233722169 ATGCTGAGAATGGCTTAGCTCTTCACCTTCCAATTAAAATGAACTCTTTTAAGTGGACGTGGAGATTAACCATGCTTATTGTTTGTATAGTACATTTGTGTCCTAGTCTATTGTCTTATTATTCAAAttacacaaaaa-attaaataataaactgGCTAGAATCCATCAAATCCAATTGCGAAAagc-----------------------------------------tttcttttgaaaaacaaggaaaaagtttTGTACATA-AATGGAGAAAATTCTAGCAGGATTTCTttacaattatttcttttttccttttcagtttgaCCAGAATAAATATTTGCGCAGCTGAAAGTGTTATTAGTAGCAGGTTCTCATTGGCTGCCTCAGGCAAGGCAAACATCAAGTCCTAGCTTGAGCGCCAGGTTT-GGGAGAAGTTAGCCTCTTGTGGAAGG----AGTTACACTTGTCTGCACGTTGCTTCAGCTTTGCCTGAGTGCCTCCTAGTACTATACATTTGTTGTGTACACGTAAGCCTGATGATACTGTCTTAAAGTACCTTGCTGTGCTAAGCATACATTCCTTATGCT---GCAAGCCAAGGCAGGCAAAGATATAACTATTTTTGTAAAAGTAGACTTAAATCCTGTCGTG---ATTTTACCTTTATCACTGGCAGATAACTTAATCTTATCACTTTCCAGGCATATT

a score=29251
s chr3           146233175 929 + 160039680 TCCAGAAGCCGGAAGGAATCACTGCAGACCACCCGTGACCTGACACTGGGCAACGT------------GGGATAAACCCCGAAGAACAAGGGACTCCTGAACGTCCTC--------AGGAGACTACATGAGGGAATGTGGCACACAGTTAGATGACAATAAAAAGTTTGGACCACAAATTTGCCTGTTGCAGACTTTACACTAAGAGGAAATACAACTTCCCTCTCATGGGAAATCATTGGTGTTAAGACTGCTACGTGAAAGTTTTG--AAAATAT-CCTATATAGACAAAAAAA--CTTTGGTTATGAAATGTATTTCCTTCTGT-ATGACTGTGTACGCTTTTAATTTT-ATATTCTCAACTTCTTTGAACAGTGAAGCCACCGAAATGTGAATATATAGTGATCTAAAGATTGTC--------GTAGGAGTTACATATAAATA------------ATACTAATTTGAAACATTT-GACTAGCATTAAAAA----GTGAGAGTCAGAGGTCAAAA-----CCTATCTCTGCTAGCTTAATGAATTAGATACAGATTACAGTTTCATAATA----AAGTAAACA--ATTAAAGATTTACATTACATTTGGATAAACAAAGTCAGGGAATTTGTTGATCATATAAAATCCACGTGTT--TTTCTCTCTTTACT-----GTGTTTCT---TCTGC-TTCCTGTTTAGTCAAGGGCCTTAAGACAGTCCTCAGCCATCAGGAACATCTGGGGAACAATGGCTTTGATTACAGATGTTTATTAAACAAGTCTAAGGGCAGAAGCTG--TGGTGTGTACCAAAGGCTGGAAGTCTGCCCACTCCCTAGGGAGAGACGGTGGTAGGTGAACTCCCTGACACATCTCACGCTACCCTCCCCGTCTAAAGGAATCTGCAGGCTATTCTGATTCCAAAACCTGTTTATTCTGCTTAGTCTGGCCTGCAGTTTGCCCT-GGATGACACCATCTCTCAGTTAATGATGacttggg
s HiC_scaffold_1 132714391 974 + 233722169 TCCAGAAACAGGACCGAGTCAGTGCATATCAACAGTGACCTGCTGCTGGTAACTGTACCAGATTATCTGGAACAAACCCTGCAGAGGCAGAGACTCCCGAATACCCTTTTCAGGGTGGGAGGC------AGGAGACGGGTCACGCAATGGGGCGA------------------GCAAGGGAGTGTGTTGTAAATTTTATAGTGTAAAGAAGTATAATTTTCTTCTC-TGCAAAGTCATTTG-GTGAAAGcaaacactttgaaattttttcaaaatgtatttttactcaTGACCAAGTTCTTTGGGCAAGAAAAATACTGCTTTCAGTTATGACTGTCCACGCTTTAAATTTTGACTTTCTTGACTCCTTCCAGCAGTGAAAGTACTGAAATGTAATTATACAATGGTCTAAAGATTATTTCTATATTGTAGAATGTATGGAGTAATATCGCATTCAACTACATTAATTTGAAGGATTTTgactagcatttttatttttatgaggatCAATGAACAAAATGTGTCTTATCTTTTCTAGCCTAGTAAGTTaga----gattaaaattttataacagaCAAAGTAAACACAATTAAAGATTTACACAACATTTGGATATACCAAGTTAGGGAATTTGCTGCTCACATGAAATCTATGTGTCACCTCCTTTATTTAGTTTTGTATGTTTCCATGTCTGCCTTCCTGTTTAATCAAGAGGCTTAGTACAGTCTGCAGTCATCGGGAACATCTGGGGAACAATACCTTTGATTATAGTTGTTTATTAAACAAGTCCTCGGGTAGAAGCTTGCCTGTATATAGCACATACTCTAAATCCGCCCACTCCATGGGAACCGAAGGTAGTAGGTGAACTAGCTGACATGCTCCACACTGTGCTCCCTGCCCAAAGAGCTTGCTAATGTGTTTGGACACAATGAACTGTTTATTCTGCTAAGCTCGGGCTGCAGTTTCCTCTCAGAT--CACCATCTCTGAGCTGGAGATGACTTGAG

a score=42823
s chr3           146235476 3032 + 160039680 tccttTGCATGGTTAGCT--GAGTGACGAGGTTGCTTCAgaaggtcacgaaggagatggctatttctcacacacagtttcaagagtttgacaatcaacagagcttcagactgctgacactgaatttagtcatctgactgaactatt-taccctgtttctcagctgaagagtcactgctttctctgtgtccctattcagaccggg---------------tgtctgttag-------------------------------------------------------------aggaagtcaataggtagagccttcaggcctggac------accaagcttcccctctttacagt--agtttacctgggatttattaggaa-tgtgtccacgggggacatctttctcttcattccacctg-----cttatccag------atctgagccctgggtatggatg---gtttacttcaggttgtaagtccgcct--------------------ttgcgttgtgacttggattggtccagcttggatgattggctagctttctcTTTTGAAGTTATGTTTAAAAGAGAACTCTCATTTCTGAGGTCTACACTCAAGGGAGCCTCTGTGGTGGGGTTGCTCTTCGGCCCACCCAGACTC-TCTGCTCGTGTGAAGCCAC-ATTCAGGGGCAGCAGACACCA-TCCTCTCACCTCTCTGCTGGCAGGCTTTGGTGCCAAGTCAAGCCAGAAAAATGAAAGACTCA---GACTCAAATTAGAGGGCAGGCATATGGGAGAAGAGAGGAGGAG-------GGTCAGCTTG-GTTAGA---AGGTT--AGAGTCACGAGGCATGGGTGGCTGTGGGGTCTCTTCCTTAAGTCTGTatttaacaaacatttactgagaccgtgtgtgtgcgttgggcattcttcctgggtccaagggtgtgtcaaaacaacagaaaatgcatgccttcctaaatgtaccttctcgatggagagagcagccagggcccccagctagat--tgtcagaaggtgagagatggtataaatcagagggtggggcaaatggctcgagtgcagcatccagctgctcccgcttagagagctgtgagggagggctgtctgatgaagtgatctttgcacgggaatgaggtatggatatgagccccgtgggcacgtggggaaagaggcggctgcagagatggagcagcaagtgtagaggcctagaagGT------------AATGGCTTATGTGAGCCCCAGGGATTGCAGGTGCATTGAAATCATTCTTGCTGTCCCGAT-------TTGCCATTAATTATTGA-----ATTCACTAAACAAACATGATGCCCTATGTGGGC---ATTCCTCAGGTAGCAGCCAAACTAAGATTCGCA-TCCCACCTAGATGAGGTTTCTAATGAGGAGAGGGTTGTTCTATGTTTGTGGGCCACGGAGAGAGAAAATGCAGACAGCA---ACTCACCCCATCTTCTCTGTACCTCGTTTCCTTCTGG----AAGAGGGGTGTGTTC-----------CCAAAAAGCCAGACAACTACTTGTCTCTTAAGAAGTAGCTAGAAATAAAAG--ACTTGCGTGGTTTTCTGACAGCTTCATTTCCATAATTGTTTCCACATTCCAAGTTGCCTGGTTATCGttggttttttttgttttgttttgtttttttttTTACAAGTTGGGGAGAATCTAAATGAGAGCTTTGCCAGTGAAGTTTTCATTTGGATTCCGCATATAGACTTTCCAAACCACCATTTTATGAAGTCTTACATTACTGGAGTTTGAAGTTGTGGTCATTGCTCCAACGTTTGGTGTCTCCTGTGGGTCTGGGTCAGAAATTCTAAATCCTCTAACCCTTTGGTATAAAAACAAACG---------TAGCTGAGATGTCTTGGAAATAAAAGTTAGCGTTGTCGATGTGACCATATCGCTCCCACGTACTGTAAAAATCAAACAC-ATATTTTTTTAAATGTCTTTTTTTCCCTCCATTCCAAGACTATTTTAAAAGAGGAGGGAACCAAAGGCTGAGACCAtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTGGACATTCTTCCAGGGCCCAGGGGTGTGTCAAAACAACAGAAAATGCATGCCTTCCTAAATGTACCTTCTTGATGGAGAGAGCAGCCAGGGCCCCCAGCTAGACTGTCAGAAGGTGAGAAATGGTATAAATCAGAGGGTGAGGCAAATGGCCCGAGTGCAGCATCCGGCTGCTCCCGCTTAGAGAGCTGTGCACATTTTAGAATGTCCGTCTGTGTTTTATACTGTGGGGCAGTCTTTGAACGCGAATTCATCATCTTTTTC-------AGTAACATAGTCATT---ACCATAAGGCTTAACTGGGATTTTTAGTTCTGTCTGGTGTTGCTTTTGGCCAAGGGGAGGAAGCCCAGCGCA-------GTGTGGACTTCTGGG-AAAGCTGCCCAAGTAGAGATA-TCTGCTTCTCAGCCATGTGACCTCCAGCAGGTGATTGTGTTTCCTCTTCCGAAAAATGGCTG-------------TGCAT-CCtgttgggaaggtgaagtgtagcgacccatgtgaaatgcttagtctagcgctctgcccagggcacacacttaatat-tagtaattaaa-----ttaGACCACGGTGCAGGTATTAACTCACTGA------------------------------------------------------------GAACATGCAGTTAA---------------TAAGTGATGGAGCTCCCTGGCTG---AGCTTGGTGGCTGCTGTGTGAAGTGGTAAAGACACCTAACTCAGCCTTTTCAATTAAGGGGGG---AGGACACAGCAGG-------------------------------------------------------TCACCCGTTCATTTGT----------------------------CAAAT-CCACCGCTATCAGGCTGAGCATAATAGAC-AGATCCTTACTCCGTCAGAGCAGAGCAGACTGG-GATGGGAGCTGGACACCAGTTCTCCCATTAACGTGGAAGAAAGTTCTAGGTATCGAATGGGCTCCAGGCTGTCTGTGTGGATGC-CGAATCGTGGCCTTCACA----TTCTCAAGCCATGGCAAGTTGAATTATTCA---GAGGTACCTTGCAGAGAGCACTT------GAGGAGCAAAATGACTTACTCATATGTTTGGGATCACAGAATCGGGTTGTAAGGTCTGAGAGAGTTCAAGAAATGCTCAGTTGGCCGTTAGTTAGGAACTGACAAGGATTTTTGGTGATTTCCAGCTTAGAGAACATGATAATGCTTGGTTCATCTGCACTGGGAACCACCAGG---AAACTTGGAAGCGAGTCTTAC
s HiC_scaffold_1 132716161 3082 + 233722169 TTTTTCTCATGATGAGCTTGGAGTTATGGGTTTTAGGCAAGAGATGTCACAGTAAATTGCTATTCCTAACACACCAT-----------GGCTAGTAACAGA-CTTAGGACAGTTGATGTTGAATTTGATCATCTGATTGAagtattgtattcttttttt---------aatcatgatttttttttttttttttttgctactggggatcgaactcacgactgcctgcttgcaaggcaagcacttatgccactgagctaaatccccagcccctccctgttGTATTCTTTGGAAGGAGGTCACTAAGTAAAAT-GACAGGTAAAGAATGTGGAATTATGCTACTGTCCTTTAGGGTGCAAtatctatataatttttaagGGGGTTCTTCTGCCCAGGAaatttgtctctttatttccATTGATTATTTTATTCAGTAATTTATTTGTATC---AGTATGGATTCatgattattttatactttagataCTTTTGTATTCTTGTACTACTTTAATTATGTTGTTATTTGAATTGTCCTAGCTTTGGTCAATGAGTCTCCTTCTTTTTTGACTTTATGTTCAAA-GAGGATCGTACTTTCTGATGTCCATGCTTG-----GTCTGTGTTGCGGGACTGCTCACCAGACAACCTCGACTTGTCTGCTGTGGTTAAGCTGCCACTTACTGGTGGTAAAAACCACTCCTCACACCTCTTAGCCAGCAGGACCTGGTGCCAGGTCTATCCAGTGGAATGAAAGGGTTGTGGGGTCCAAATTAGAGAGCACATatacagaagaagaagaagcaagtaATAATGGTCAGTTTGAGTTCTACTCAGGCTTGGGGGCCTCTGGGCATGGGTATACACAGA-TGTTTTTTTTAAGTCTAGATGTAACAAGTATTTACTGAGAGTCTTT---TGTGTTTAGCATCGTTCCAGGCACTAGGAATGTGTCATAGCAAGACAAAATCCTTGCCTTCCTAAGCATATTTTCTAGTTGGAGAAAA-GGCCACGACTCCCA-CTGGACAGTGGCAGACAGTGAGA-Atgctggaaa--gaaaaatgaagaaggagAGTAGAG------------------------------------GGAAGGACTCTCTGACGAACTGATGTTTGTGCAGGAATGAGGCAAAGAAATGAGCCTTGTGGGTACCCGGAGGAAGAGGTTTCTGGACAGACAGAATGGCAAGGGCAAAGGCCTTGAAATTGCCTGACTTTTTAGTTGGCTAAAAGACCCTTGCGGACTGTAGATGGatctacattttctttactttcctgATCTCACTGTTAATGTGAATTATTGATGAGAATTCAGTAAATGAAAATG----CTTATGCAGATTTGGTTGCTAAGGTACAAACTAACATAACAGTCCAACTTCCATCTGAATGAGATTTCTACAGAGGAGAGAATTGCTCT--GTCTGTGAGCTGGAGGAAAATAAACTGTGCACAGCATCGACTGACCTTGCCTTTGATGAAACATGTTTCTCCCTGGGAGGAAGGGGAGAGTGTCATTGGAAGCCAGCTAACAAGCCAGGCAGCAACTTGTCTTATAAAATGTAGttagaaataaaagcagtttGAGTGGTTTTCAAATGTCTTAATCTTCATAATTGTTTCCACATTCCG-GCTGGCTGGACAT------------------------ATTTTCAGAGAAGCAAGTATGGGAGAGTCTAAATGAAAGCTTTGCTCACGAAGTTTTCATTTGGATTCCACATATAGACCTTCTAAACCATCATTTTATAAAGTCTTAAATTACTGAAGTTTGAAGTTGTGGTAATTGCTCCAAAGTTTAGCATCTTTTGT--TTCTGGGTCAGAACAT-TAAATCCTCTAACCCTttagtataaaaacaaacaaaccaacaccaGCTTGGATTTCATAGGAGTCAGGTTTAACAACATTAATGTAATC-------------------cagaaattaacaataatat-------GATGCCCTATTCTCT----------AAACaagttgaaa-------------------------------------------------------------------acatttttcaaaag--------------------------------tgtCTTTC------TACCCTTTT---------------CAGGgctgct----------taaaaaagaaaaaaaaaaaataaa-------------------gatcaaaagcTACATAGGAC---------------acctatctattttt-----------tttttttttgatagtttgGGGCAGTCTTGGAATATGAGTTGATCAGATATTTCTGTTTGTAATTCTATAGTTAATGCAACTATAAAGAT-------AATTCTTGGATCCATCTGGTATTTCATTTGCCTAACGAGAGCACATAGTGTGTAAATGAGTGCTTGGGCTTATAGACAGGGTTGCCTGGATAAGAATCTTTTGTTTCCCACCTGTGTGCCTTTGATAAGATCTTTCAGTTTTGTA-ACTGCAAAATAggtataataattatatttacataattattgGGAAGATTAAATTAGGTGATCCA-GTAAACTTTTGAGCCTAGTACT-GGCATAGAGTAAGTGCtccaaatagaataattaaaaatagcaagaccAGAGTGCAGATATTAAGTAACTCACATGCTTAGACACATATGTaacacatagttaaaaaaaactatgaaCATATGAAAAACTATGAACACATAGTTAAAAAAACATATAGTTTGAAAAGATGGAGCTCTTAAGTTGTCATCTTTAATGATTGATGTATAAATTAGTAAAGGCATTTAACTCAAAC--TTCATTTTGGGATGGAACAAAATACTGTAAGATAGagatccattcatccattgattcatacatatatatatctgttcatcatccatccatccattcattcatttattcatgcatttgttcatttattcaacaaatgctGACACTATGAATGTGAACATAATAGGCAAGGTCCCTGCTGTGCTAAAGCAGAATGACCTGGTGGTGGGAGTTGAACAGTAAGTACATAAATAAGAGAAGAGAA-----TGGGCAGTG--TGAGCTATTGGGTAGATATGCAGAAGCTCAAACAGAACTTTTCACAGGATTTCTTA--------------GAGTTGATCAGGGGAGGAATTTTGTGAATAGAACTTTTATGCTATAATTGAGATAAC--ATTAATTTGTTTAAACTCACAGAGTCATAT-------TCTAAGAAAGGTCAAAAGA---TCAGAGATCTGTCATTT----TCTGAAGA----TTTTAGTGATCTCCAGGTAAGATTATATGATAATCTGTGATTAATGTGGCCTGGGAATGGACTGGCAAAAGCTTGGCAGTACTTGTTAC

a score=4921
s chr3           146237385 126 + 160039680 tgtATTGGACATTCTTCCAGGGCCCAGGGGTGTGTCAAAACAACAGAAAATGCATGCCTTCCTAAATGTACCTTCTTGATGGAGAGAGCAGCCAGGGCCCCCAGCTAGAC--TGTCAGAAGGTGAGAA
s HiC_scaffold_1 132717042 126 + 233722169 TGTGTTTAGCATCGTTCCAGGCACTAGGAATGTGTCATAGCAAGACAAAATCCTTGCCTTCCTAAGCATATTTTCTAGTTGGAGAAAA-GGCCACGACTCCCA-CTGGACAGTGGCAGACAGTGAGAA

a score=63033
s chr3           146239589 1990 + 160039680 AGCCTTACCTTGTCTAGGCTCTCCTACCTTTGGGGTCCAAGAGGTCTTATGCTTAGAAGGCCCAGTGCCAGTCCTGTAAGCCTGGTACCACAGTTTGGTGTCCCCTCTTCACACAA--GTCTCAAGCGCTTGCCTTCACTTAGCAAGGGTGTTGGGTTGGATATCTGCACAAACCCTAAACATCAGAGGCATCTGTCGAGGCCTTGTCCCCTATCACCTGTGGGTCAGAGAGTGTCCTGGGAGAGGAACTGAGTTGAAGGGAT--AAAAGTTCA-------------CATTGGTGCCATTTAGAAGAGGAGACCATGAGGAAGAAATGAAGGAGAAGATAAGGGAGGGGGAACTGAGACCAAAGTCTCCATTCCTGCA----CCGTATGCTTAATAAGTGGTTGTAACCGTAGCCCGAAACGAAATGCCAGTGAT---GGGATGATCAAGGCTGGAATTGGAGGGGTGGAATCAATCTCTTGGTAAAGGCATTTGGCCACGGATGAGAAATCCAACACCATTATCTTGGCAAGAATACGCCTGGCATACCTGCCTGCTCTTAATGACAGATCAGAACTCATAAATAAGAAATTTGGCCTGGATGCTACCAGCAGAAAACATTCATTAATGATTCCTGCTACACTGTTACTGTCACTGGTGCAGACTGGGAATCGTAAGACAGCACATTTGGTGTACCGGTGCTTCCTGGATCATCTGTCCGTTCTTTCACTAAGCCAGCTATTCAGTTACCTGTAGGGAGCGAGCAGAGCCTCTAGATCCTGGTGTGAGTTAAATAGACATAGTTCCTTCCCGGAACTTTCAGCCTACCTGGGGAAATGATTTGCATGCTGTGAGGTAGGAGGCCAGGAGTGAACTTACTGAAAGGAGTCACCTGGGGGAGGGGTGTCATAGAGGCAGTAGGTGGCTTAGCAAGTGACTTCGTCCAGAGTGATGATGCCAGTCTCCCTGTG---TTCCTTTCTAGGAGGCACAGTTCTTGTCCACCATGAATGAGTGTCACTATGACAAGCGCATGGACTTTTTCTACAACAGGAGCAACACAGACACAGCGGACGAGTGGACAGGGACAAAGCTTGTGATCGTCCTGTGCGTGGGGACGTTCTTCTGCCTCTTTATATTTTTTTCTAACTCCCTGGTCATTGCTGCGGTGATCACAAACCGGAAGTTCCACTTTCCCTTCTACTACCTGCTGGCTAACTTAGCTGCTGCGGATTTCTTCGCCGGAATCGCTTACGTGTTCCTGATGTTTAACACTGGCCCGGTGTCGAAAACGTTGACCGTCAACCGCTGGTTCCTCCGCCAGGGGCTCCTAGACACCAGCCTGACTGCCTCCCTGGCCAATTTGCTGGTTATTGCTGTGGAAAGACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGGCCATCGCCATCTTCATGGGGGCCGTCCCCACGCTGGGATGGAATTGCCTCTGCAACATCTCGGCCTGCTCTTCTCTGGCTCCCATTTACAGTAGGAGTTACCTCATTTTCTGGACTGTGTCCAACCTCCTGGCCTTCTTCATCATGGTGGCGGTATACGTACGCATCTACATGTATGTTAAAAGGAAAACCAACGTCTTATCTCCACACACCAGTGGCTCCATCAGCCGCCGGAGGGCTCCCATGAAGCTAATGAAGACAGTGATGACCGTCTTAGGTAAGCAGAGCCAAGTGAGCCATGGTTCCCATGTAT--GCAGCCAATCACATGGCAGACAGCAaatgtccactatgtgccaggcactcactgtgcagtcagaaggcagcagtg-aagagatcagacata-----atcccca-ctcacagagctcacattctcatag-----------TTACGTGCTCTGATGGGAGTGACAATGCAGGCAGGACCTAGAAGATAAG-----TCTTGTGCTAAGAAATGTATCGAGCAGAAAGATGAG--GTGCCACACA-GTGTAGCTTGTGATTGCCAAAGG
s HiC_scaffold_1 132721767 1774 + 233722169 AGCCCTACCTTATCCAGAATCTCTCACCTTTAGGGGCCAGGACATTTTGTACTGAGA-GGAACAGCATCTTCTCTGTCTGCCTGGCCCTCCCGGTTGGAGTCTC-TGTTCACACATCTGTCCAAGGGACTTTCTTTCAC-----------ATTATATTGGCTATCTTCTCAAACCCTAGATCTAAGTCTTGCACATAGACATCTCATCCTCTACCACCTGTTGGTT-GAGACtctccaaagaaagaaatttaagtgATTGACTTGGAAAAttcaataaacaaatatatattggTATAGTATAGATTAAGAGACTATAAGGAAGGCTTGAACACAAAGGGGAGGAAGAGGT------GTTCAAAGTCTTTCTCCCTGTATATACTACATGCTTAA-AAGTGAATGTGATTGTAGCTTGAAACCTAA--ACAATGATCAAAGGAGGGTCAAGAGTGGGA------------------------AGCAAAAGTGGTGGACCACAGGCAGAA--------------------------------CGAGCAGATC---CTGCAGTTA--------------TTCATAATGAACAAAATAGACACAGATGCTGTC------------TCACTGA------------AATTGCCGCCTTCCCTGGT--AAAC-----------AAACAACACGC--------------------------------------------AAGCTAAATGCTGTG------GTGGGAAGT------------TAGGGACCAGTGTGTTACAACAAG---------------GGGATTTTT--CCTGCCAGATGAAGG---------------------------------------ACTAGTGGAAGTTAGCGGAAGAAGGGACCACA-AGTGTTAATTGGTGTCTCAGTGC-TGATTTCACAAACAgtgatattt---gtttctttttaaaatttctttgtaggATGTTCTGCTCTTCTCCACGATGAATGAGTGTCACTATGATAAACGGATGGACTTTTTTTATAACAGGAGCAACACCGACACTGCTGATGAGTGGACAGGAacaaaactcttaattgttttgtGTGTTGGGACATTTTTctgcctgtttatttttttttctaattctctgGTCATCGCAGCTGTGATCAAAAACAGAAAGTTTCATTTCCCTTTCTATTATCTATTGGCAAATTTAGCTGCTGCAGATTTCTTTGCTGGCATTGCCTATGTATACTTGATGTTTAACACTGGCCCAGTTTCCAAAACTTTGACTGTCAACCGCTGGTTTCTTCGCCAGGGGCTTCTGGACACTAGCTTGACTGCCTCTCTGACCAATCTGCTGGTTATTGCCGTGGAGAGGCACATGTCAATCATGAGGATGCGGATCCACAGCAATTTGACCAAAAAGAGGGTGATACTGCTCATTCTGCTGGTGTGGGCCATCGCCATCTTCATGGGGGCGGTCCCCACGTTGggctggaattgcctctgcaacATCTCTACCTGCTCCTCCCTGGCCCCCATTTATAGCAGGAGTTACCTCATTTTCTGGACTGTGTCTAACCTCATGGCCTTCTTCATCATGGTGGTGGTATACCTTCGGATCTACATGTATGTCAAGAGGAAAACCAATGTCCTGTCTTCACATACCAGTGGGTCCATCAGCCGCCGGCGGGCTCCCATGAAGCTCATGAAGACAGTAATGACTGTCTTAGGTAAGAGGAGCCTTGTGAGTCATTTTTCCTATTCATTAGCAATTTTTTATTCAGCA-----------TCTGTTGTATGTAAGACACGTAGTGGGCAGTCAAGGTGCAGCAgtgcaaaagaaaagacataaatcCATCCCCGTCACCTAGAGATTGTACTCAAATAGGGGAAGAAAAAGTAAGTATTCTACTAGAGG----GAGataaatacaatttataaaataagaaggatcttatgtggaaaaataaaccaagaaaggCAATTAGGAGTGCCAAGCATGTTAAATTTgtgacttaaaaaag

a score=18822
s chr3           146240526 783 + 160039680 TCTCCCTGTGTTCCTTTCTAGGAGGCACAGTTCTTGTCCACCATGAATGAG------TGTCACTATGACAAGCGCATGGACTTTTTCTACAACAGGAGCAACACAGACACAGCGGACGAGTGGA---CAGGGACAAAGCTTGTGATCGTCCTGTGCGTGGGGACGTTCTTCTGCCTCTTTATATTTTTTTCTAACTCCCTGGTCATTGCTGCGGTGATCACAAACCGGAAGTTCCACTTTCCCTTCTACTACCTGCTGGCTAACTTAGCTGCTGCGGATTTCTTCGCCGGAATCGCTTACGTGTTCCTGATGTTTAACACTGG-CCCGGTG-TCGAAAACGTTGACCGTCAACCGCTGGTTCCTCCGCCAGGGGCTCCTAGACACCAGCCTGACTGCCTCCCTGGCCAATTTGCTGGTTATTGCTGTGGAAAGACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGGCCATCGCCATCTTCATGGGGGCCGTCCCCACGCTGGGATGGAATTGCCTCTGCAACATCTCGGCCTGCTCTTCTCTGGCTCCCATTTACAGTAGGAGTTACCTCATTTTCTGGACTGTGTCCAACCTCCTGGCCTTCTTCATCATGGTGGCGGTATACGTACGCATCTACATGTATGTTAAAAGGAAAACCAACGTCTTATCTCCACACACCAGTGGCTCCATCAGCCGCCGGA---GGGCTCCCATGAAG---CTAATGAAGACAGTGATGACCGTCTTAGGTAAG
s HiC_scaffold_1 162678770 774 + 233722169 ttttcctcctttcttttttag------------ttCACAGCCATGAATGAACCACAATGCTTCTACAACGAGTCTATCGCCTTCTTTTATAACCGGAGTGGAAAGTATCTTGCCACAGAATGGAACACAGTCAGCAAGCTGGTGATGGGACT-----TGGAATCACT-GTCTGTATCTTCATCATGTTGGCCAACCTTTTGGTCATGGTGGCTATCTACGTCAACCGTCGCTTCCATTTTCCTATTTATTACTTAATGGCTAACCTGGCTGCTGCAGACTTTTTTGCTGGGCTGGCTTACTTCTACCTAATGTTCAACACAGGACCCAACACTCGGAGAC--TGACTGTCAGCACATGGCTCCTTCGTCAGGGCCTCATTGACACCAGCCTGACAGCTTCTGTGGCCAACTTACTGGCTATTGCAATTGAGAGACATATTACAGTTTTCCGCATGCAGCTCCACACGCGGATGAGCAACCGGCGAGTGGTGGTGGTCATTGTGGTCATCTGGACGATGGCCATTGTCATGGGTGCTATACCCAGTGTGGGCTGGAATTGTATTTGTGATATTGAGAATTGTTCCAACATGGCGCCCCTCTACAGTGATTCTTACTTAGTCTTCTGGGCCATTTTCAACTTGGTGACCTTTGTGGTAATGGTGGTTCTTTATGCTCACATCTTTGGGTATGTTCGCCAGAGGACTATGAGAATGTCTCGGCATAGTTCTGGACC------CCGGCGGAATCGGGATACCATGATGAGTCTTCTGAAGACTGTGGTCATTGTACTTGGTAAG

a score=22704
s chr3           146244226 826 + 160039680 ACCTGTTTGTGTGTTTGCCAATATCTTTTCTGACCAGCCCTCTCCTTTAACCACCTCACTCTCCCTTTCGCA-TGTTACAAGTATATGGAAGGACAAGTGTGAATTTATCATGACTTCCCGG---GCACCACACAGGCTATTGAC--ACTTCTGGTAAAGACAGAAGGTTAGCGTGAAGAGGT-ATGTCAGTGAGGTGAACTCGACTC-GTCTCCTGCTCAGTTTGTAAGGCTCA-TTATTTGCTTGGCTATGAGTTCTGTGGAATTACCTGTCTGCTTGCAAGAACA-------CCGGCACGTTGT--------CTATACCACACAGCAAGAGGTAGAAAGGGCTTCTGTCCCCAGGGGTCAGGGAGGGTCTACAACCAGCACAGGCTTCATTGTCGTGTGTGAGTTTG-CTGG--CAATTATGGAAGAGCTTAGAATAAAGGACTTATGTGGTTTCAACAGGTGTGGTGTTGGGTAAGAGAAAAAACAGAATAAACAGGGAAATTGCCAAGCATAG--GAGAAGTTATGGGATTTCAGTGTAACAG-GTTGGGGAATTGGTTAGTGACAAGGGGACAGTG-GATGCTGAGG-ACCTGGGGAAGTTCCCCTGGTGGTGAGACAGAGGGATTTGGTGGAAGACAGGAAG--TGAGGAAGAGGGAAATGAAACTGAAGAGCCAGGTA--GTAACAGTT-TAAGATTTCTAGCTTCTAATTTCTTT-AATGGCAGAT-TTGGGGTT--TCCAGAACTTTTGAAAGTTTTCTTTAAAGTGACCTAGAGCACACAATTTCATCTTTTGAGGGTGGTAAATTTCCTAATCTGATGTTGAATGGACGGCCTTTCAGTTCTTTCCAGGATGTAA
s HiC_scaffold_1 132725631 815 + 233722169 ATTTATTTGGACTTTTGCTGGTGTTCTTTTTGTCCAGCT-TCTGCTTTGACTGC-TCATTCTCTTTTTCAAACTGTGAGAAGAATAAGAAAGGGCAAGTTCACATTCATCAATATTTCTCTTCTTGAACTCGAAAGAGTGTTGATGTACGTTTG-TAAAGACCAAAGGTTGGTACTGATAGATTGTGTCAATCA-----ACTCTGCCCTGCCCCCATCTCTAACTGGTAGGCTTAGTCATTTGGTTGGTTGTGTGTCTTGAAGAATTACCTTCCTTcttggaaaaacattttttaccAGTATATTATACTATTATCAACAGTATACAGCAGGAGACAGGAAAGGCTTCAGTTCATA------------------------------------CTGTTATGTATAAGTTTATCTGGAACAGTTA-AGAGGAGTTTAAAACAAAGGGGCTTTGTGGTTTTGACAAGTGTGATGTTGGGCAACAGAAAAAcggaaataaacaatgaaaatgcccAGTAGGATAGAGAAGTCGTGGGATTAAGATGAAGCAGCACTGGGGAATTGGTTAATGGCAGGATGACAGTTTGGTGTTGAGGGACCTGGGGAAGTTCCTCCG-TGGCGAGACAGAGGGATCTGGTGGAAGACAAGAGGTCTGGGGACAGGGGAAATGAAACTGAACCCCTGCGCAGTGTAAAGGTTGTAAGATTTCTAGCTTCTGATTTCTTTGGATAACAAATATTTGGGTTTATCCCCAactctttta--ttttctacaaGGTAATCTGCAGC-CATTAGTTTACCTTTTCTTGGT--TAAATCTCCTTATCTGAGAGGGAATAAGCAATC-TTCAGTTCATTCCAAGTTGTAA

a score=15469
s chr3           146248662 952 + 160039680 TTGAGgccgtgtgaccctgggcagtttagctaacctctctgtaacttggaatttccatcttc----cgaggaga-------cagtacctttgctatggtaagggttcaaaga--cagaga-cacatgcttatagaacaactcagtcagcattgagtgcatggtaagtactaggaaatgattagcactTCGTCTTAGAACTTAGTTTCACTTGGGAGGGGTTCATGCTGTATTGAAGCAGATTGTCCTCTTAGCCCCAGAAATGTGCCAAGCACCCTAGAGACAGAG-CCTGAGCCTTGCTGTTGGTGCCATGGTAGCGTGAGATTCTAGAGTATAGACAGGCAGTGATGAGGAGGCTGACAGAGT---------------CACCTGAGAGCTGGTGAGTGGCATCCAAAGTCTCTGTCATTGGAGGTCTGGAGCGT----CTTCTGTGTTCAACACAAATTGAAAAATCTCTACACTCACCTTGCTGATTTCTGCGAACTACTTTCTTCCTTCAGACCAAATTCTGTCAGTGACTCCTATCTCTGACACATGACGTTAGCATTCATGACTCATTT-----TTATAACATTTATGACTACACATTTGTGACATGCCATAATGACAGTCAGCC----------CAATAAGAGTCCTACAACACAGAGCCAGCATCCCATGTGTA------CAAAATGTTCCTCATGACACATTGTCTCCCTCATCT--------------------AGGGTCCCTTGTTTTCAAGGGTTCCTACTGCCATTCGTAGAATCGGGAGATCTCCT--GGGTCTGAGAAGAACTGGGACCAGAACCCAAGCCTTTAACATTGTTCATATGCTCCGTCAGTG----AAATGTCTTTGCTCCATTGGATATAAAGAAGAGAAGGTAGGGAGGTGAGAAAAAATAAAGGAGAGAGGAAGGGAAGGAGGATGGGTGCAGGCAAGCGTGTGAGTGCAGTGATGCCCATGAATAGACaaacacacatgcacattctcacatgtacacacatgcac
s HiC_scaffold_1 132729925 955 + 233722169 TTCAAGTTGTGTGGCCTTGAGCAATTTACCTGACCT-TCTGGGACTTAGTTGTTTCACCAGTAAGATGAGGAGGGTAATATTAGCACCTTTGACATGGTGAGGTTTTGAGGGTTCAGTGAGCTGATGCTTATTAAGCTCCTAAGATGT-------TGCATAGTGAGTGCTAAATATTA--TAGTTACTATTCTTAAGCCTTTATTTGACTTTGAAAAGCTTTGTCCTATATttgagcag--tgttccttt--tccccacaatgTGGTAGGCACCCTGAAGACAGGGGTAAGATGCTAAGTGATGGTGCCATACTGATGGCAGAATTTCAGAGATGGATGCGTATCTCAGAGAAAGTTGGCTGTGTGTGCTTAGCAGAGGCTGCCCGACAGCTGGCAAA-GGCAGCC---GGCTCTGTTCCTGGAAACTTAGGCCACTCAGCTCACAAGGTCATCACAAAAGTGAAAAACTCTAGGCTTACATGGCTGGTCCCTATAAA-TACCTTCTCCCTCTG-------TTCTGGTAAGCATTTCTGTTTCTGACAGATGCCTTTACTATTAATGATTCATTTAACTTTTGCAAGatttatgaataaaacataataa-atgagACCTTGACCACCAGGCATTAGTTTGATAATACAA--CCTGTAACATAGCACCAATGTCATGTGTGTAGAAGTCCAGGACATTCCTCTTAAGACACTGTCTCTGTCCCCTTTTTGCTGACAAACCCTGCCAGGGTCC-TACTAATGAAGTGCCCTTTTCCCCTTTGCCAGAACTGGAATATTTGCTTTGAGTCTGAAGAGAGCTAGGACCAGGACCTAGGCCATTGAGACTGTTCATGGGCTTCATTGATGAAACAAATGTCCTTTC-----TGAATGAAAACAAGGAGAgttggagaaaaaaggaagagaagtagAGGGATAAAGAGAagagaga-------------------------------------------acacacacacacacacacacacacacacacacacacacac

a score=73923
s chr3           146256097 8485 + 160039680 [encoded data, 9926 characters]
s HiC_scaffold_1 132735610 8704 + 233722169 [encoded data, 9926 characters]

a score=64907
s chr3           146271173 7067 + 160039680 [encoded data, 7716 characters]
s HiC_scaffold_1 132752690 6611 + 233722169 [encoded data, 7716 characters]

a score=26744
s chr3           146278246 3544 + 160039680 cctctcaagaagggcacataattcacgccatttcagatgcttgggagagacgttaatccatcatccagagtggatgtctgagggcatcctagctcctttctctgggtgaagttgttga---aggaggcACCTGGA--GGCTGAGCTGCATAAGC----CACACTCCTGAGTACTAC----AGAGG-----AGCTGGTCTAGATTCCAGTTCTCGGCTCCATCTGACTCCCTCACTGGCTTACCTGATTTAAAACCATCCTGGGGCGATCGGGAGTCCCCGGGTGCCTCGAGCTCTTTCTGACCCCTCTGCACAGTCATTCCTGACCTTCAGTACCCAGCTCCACAGACTGCTTCTTCCCCAGAGCTCTTCTCTGAG-----AGCTGCTGGGGTCTTGGGCCTGGTTTCCATTCCTGCCAAGTCCTGAGAGGCAGGA-GAGTACACTGTCAGCAGTGGCAGGTGATGGCAGCTAGCTAGCATACTGCCCAGCCATG---TGGCTCGTCATAGCCTCCAGTCAGGTTCATCTGACTTATCTCCTCCGCT------------GCTTCATGCTAAG----AATAACAAAAATGTCTAAGGTAAAGCTTGCTTGCTTACGGGGGTTATGAAAGGCCTGGAGATAAGGGCT--GTACATTAAAAAGAATCACTTTAAATAATGCACAAGGCT-AAGAGCCTGTGCAGGGGAGTA--GGGC-------------------CTTCCATC----------CAGGCCT----CAAGCT---CAAGTGCTCTAAATATCAAAGTTCATCACCTAGGAGACTAAGAC------------AGCAATTCTGTATGGC--TGGGCTTTAAATGGGAGTCATCTA--AAGCTCTAAGCACTCTGCATGGCCAAGAGCTCTGGGCAGCGGGCAGGGGAGGGGGAGTGGTAATATGGACTGAAGCAGGTAATACACACTCAGGCATGTGGATGTTGCACTAGGAG-GTACTGGAGGAACTGAAAGAAAGG---------ACTGGTCACTGTG-----------TGTGATGGAAAGAAAAC-CAAGCTAAGCTTGGAAAGAAAACTAGACTTCAGATTAGCGGAGTAGGGAAGGCA----AAGCAAAACAAAGAGCGATGGTGCCCAGGGGAGGACCGTGTGTGTCTTGCCTGTAGATGCATTTTGAGGCTAGAGTTTGTACACTGATTTATACATGTGAACATGAGCACTTTTTTCCCCCAAATCTGTGATAAAGAATTTGATCACTAGAGATATGTTTGTCTCATTTTAAAAGGTCCTG-----CCTGTTTCTC-----CCTTT----TAAAT--ATGGAGTCAGTGATTTTTGTCATCCGGATCAGGTTGCTTGAA-TGATTTGGGGGTCAGTTTAG--AGATGGTTTACAAAGTGGACTGTACCTTATTCTCACCCAGGGAATCTATGAGTCCTACACACTTC------------CAGAGAT---GGTATTAGGTTCACTGGGGGATCAGAAGGTAAATTATTAAAATTTTCTCTTATTGGAATgggggattgctcagtgggtaacatatttgctttgtacgcataagaacctgaatttgatcatcagaacccatgtaaaaaagaacctgaatgtagtggtgtttgaacgcagtctcagtggtgggttgatagtggtgcgtgaacataatctcagtggtggggagataacagggcacatccctggcacttgctgatgagtgtcaagctcacgagagattatctcaaaaaacaaggtggacaacatgtaaatatagcatc---caagtttgtcTAAGCACACACATGTGAATGTGCACTCCCACACATGTACCCGAacacacgcgcacacacacacacacacacacatgcacacaAATTCCCTTGTAATTCAGATGCCTAGCTAACATGGGAAGCTAATAATTTACCTTGATCAGTTTTTAGGCGAGGAACTGCGTATGTCCTGAAAACAAGTCAAA----------TTTGTCTATTTTATAATGAGTTGAATCTCATAGTTACACAGAATTTGACAATTCTCTAAGTGAAAAAAATTATTTAGCACATCTATTTTTAACATTAAAATCTCCC-TGTAAGCATCCTAGAATGATGTAGACAAAGGACATACGTGGCCCAGGAAGACTGGACCTGCACATACA-------GACTTCTCCTAAATCCCTCTATTTACTTGAAGTCTCACATCCAAATCTCAGCTCTTTGTCCGCCTCCAC-----GTGACCTCCTAGAGCACCCCAGGACACATCCATGCTAATCTCTTCTGTGTTATCAGCATGCATGTTTTAGAGGACAGTTGACCCATCCTGTCTTCTCCTAATCTCCAAGAAATGCATTCCTAATTTTGTCCATTTGTCCCCATATAGGTGCCAGTGGACTGATGCCTACTGGTTAATG-CTGATTCTATTATTAGATGCAAACTTGATCTTATCATGGCTTCTTGGAACC---CTGGTAGTTCCTAGTAATAAGTGTGT-GTTGAGACAGAACACACACACACACCATTCCTTTAAGTTTTTTTTTTTTCCCTAGAATTTATAAAAGATTGGTAGGGGCTCACTGAACTGGGCCTCCCAGGATTTCTTTCCTTTCCTGACCCACACTCACttgagacagagtcacatgtgccccaatttgcctttaaaagacaatgtaactaatcttgaacttaaacttctggctttcctgcatctgcttctccaagtgctctgccacttggcttatttagtgggagcagtgggtagaacccatggcttcgtgcatgctaggtaagcaactctaccagccatatctcagccccTTTCCTCCCATTTTTAAGGATTAATATGGTTGCCCA----CACATATCCACTACTCCCCACATTCTTTAAGAATTTTCCACTGTTACAGATTTCCAGGGCCTAAACTATTCCTGACATG------TCATTTAAAATATTTTGAGAGCGTGGCATCATACCTTTTGGATGACACACAGTAGGACCCTCTAGGAAATGAACTGTTAGATCATGCCCAACAGTACCTGCTCTGTGTGAAGCACATGGATGAGAACCTGGCCTTCAGGGTGTGGGAATCT---------TATGTTATCCCAG-TTAGTGTGTAGGGTGTGAGAGACATGGCGTGCAATACCTATTCTGTAGGTAATCAGCCCCCAGCCCCTCACCCCCTGCCGAGCTTAG------GTTGTTCTTTTGTTTTTC-----------------------CTTGTTCTCTGGAAACAATACAAACA-GAAGATCAACATAATGATGTCTC-----CTTTACTCTATGACTAGCTTCACTTCTTCTCTTCGTCCATCTGGTCTACCTTCACCTTCTATTTTTCTCCTCTCCCTTCCCT-ACCAGACAGTCTCCCTGTTGCACATCAGGAAGTGACTTGG---------ATGCAGCTCCACAGTCGTATATGACATAACAGAACCTGAGGATGGAGGAACAGCACTTCTTTCCCTTCCCTTTGCAGGAAAACACATTCTG---ATCCACCGCCAGGTGACCGCCTAGCGCAGAGAC---------------GGTGCAAGGCTCcctggtttgaaatcctggccttgccagttaccagctaggtgGTGCCTTACAGCACACCACCTGGCA-----GTG-------GGACTCAGGGCTAAAATGAAAATTGCATCAG--TGCCTATTTTCAAGAAATACACTGAAAAATTAAGTGATTAGTTCATATAAAAATAATAAAACAATA-CTGACATATAATT-GGGGTTCAATGAAAA
s HiC_scaffold_1 132759736 3106 + 233722169 CCTATTGAAGATGGTGCATAACTCATACCATTCTAGATGCTTG--ATAAGAGCTTATTTATTACATGAAGTGGCTATGTGAGCGCATTCAGACTTAATTCTCTGGGTGA-GTTCCTGACTTAGAAAAGGCTTAGAATGTCTAATCTATACAATAAATACAAACCCCTGAGTATCGCTCATAGAGGTCTGGATTTAGCCCATGTTCCCCTCTTGGACTTCATTTTACTTCCTCAATCACCTACCTGGGTTAAAACCATCCTGAACTACTTGGAATTCCCCATATATATCATGCTGTGTTTTTAACCTCCACACAGTAATTCTTGACCTTCAGCAACCAGCTC----ATCTGTTACTTCAGCCTGGCTCTTCTTTGAGTCATCAGATGCTGTG---------------TCCATCCCTG-TAACACCTGAAGGCCAGAACTGGTATACTCTTTATATCAGCAGGTGCTACCA-----CTAGTGCAGAGCCTGGCCTTGTGTTGGCTCTTGGTAAACTTCAGCTATAGTCACCTTGCTCATCTCCTACGCTACTGAGTGTGGGGCTCCATCCATAGATCTAAGATCAAACAAATGTGACGCACAGTCTATATACTTAGAGGGCTTATAATAAGCTTGGAGATGGTACCTAAGAATAGTATAAAGTACTACCTCCAGGATTACACAGCGCTCGAGTGCCT-TGCATGGGGGCATTGGGCCTGGGTTCAAATTGTGATTCTTCTATTTGTTGTCTTACAGACCCGGGAAAAACTGTGGAAGCACTATAAACTTC-AAGTACATCATATGTTACACTAGCACAATAGTAAGACTAGTAACCTTGCAGGGCTGTGAGCTTTGGATTGGACATATGTATGAAACCCTGAGC-TTCTGCCTGATCCAGAGctctcagaa-----------------aatgaaagcatgGAATGGAGCAAGTAATGTGGCCAGTGCCACACAAGCATTGCAGGTGGAGAGTACCACAGGAGTTGAGAGGAGGGAGAATCAGCATGGGTTACAGGGATCAGTAGATCAGTGGAGGAGGCAGAATATGAACCAAGCATAGAGGAAAAAGTAGACTT-AGAT--GAGGAGACAGGAAGACATTTCTGGCAA----------GATGG------------------GTGTGCCTTGCCTATACACCAGTTTTGCAGCTAGAGTT--TACATTGATTTATGCATATGTGCTCAAACAGTTTT-----CCAAACACGAGGTGAATATATTGATCTCTGTACATAGTGTTTCCTCATTTTAAAGAATTCAGGGCCTCCTATCTTTCTGATGCCTTTTTGCTAAGTCCATGGAGTCTAT-AGGTTTGCTGTGGGGGTCAGCTCAATGGAACCCATTTTTGTGTCAGCATAGACAAATGGTTTACAAAACTAGTTTCACA-TAATATCACTCATGGAACCTGTCAGTCCAACAGACTTCCACATCCTACCGCAGAGATTCCGATGTTGGGTCTGATATGGGACTAGAGGCTGCATTATTAAAAGGCCCCCCT-----------TGGTGGTTCATTTGGCCAGATATCT------------------------------------------------------------------------------------------------------------------------------TGGGGAAA-----------------GGTAGTAGCTTAGGGAATCCATTCTCATCAGAGTT--------------------------TTCAGCCGTACCATCTTATAAGTATGTCTG-------ACAAGCAAAT-------------------------------------------------------------CAAATTTGTTTGAATTT---------------TGTGGAGAGTTGAAAGTCAAAATTTCACAGAACTTA-GCAATTTTCTGCaca------gaaaacaaatcagaagaCACATCGCTTACCTTTCCTGTAGGGAA--AAATCTCTTCCCTTGGCAT-ATCTCAGGAACAGCCAGGTAAAGGAAATACCCTGG-----------------TTAaagccccccacacacacacacaggaacagc-CAGGTAAAGGAAATACCCTGGTTA--aagcccccccccacacacacaataATGTGTTGCTTTCTAAATACCTCCA-TTACTCAAAGTCTTAAATCCAAATTCTCACTCATTGTGCCTTTCTGTTCTGAGTGATACTCTAGAATGGTTCAAGATATGTT--------TCTTCTCTCTGTGA-AAGCCTTTTAGTTTTGAGGAACAGTTAAAATATCATGCACTCCAC------CTGGGAAAAACA----------TATCCCCTGGTTCCCAGAGAGATGCCTCTGGACTCACTCCTATTTGATGATACCTGAT--TATTTTTTAGTG---ATTTGGACCAGTCATAACTTCTTTGAACACAGCTGGTACTTCATTGTAATGGTTGGATCCTTAAGGCTAA--ATACTCAAAGAacattacttttagttttttctt-----ctagAATGTATTGAGGATTGGTA-TGGCTC-----------------------------------------------------------------------------------------------TGActgatc----------------------------tctctttctc------------------------------------------------------------------------------------------tctcacccc-------------TTTAAGAATTAGTACATTTGCCCATTTGTATGTTTCTGACATCTCCCACATTCTCTAAGAATTCTCCAAGATTACCGATGCCCAGGGCCAAGTCCATTCctcacattttcttctctttttaattttcttgg------ggCCTCTTATCTAGCTGCTGACATATGATAAAAACCTCTAAAGAATGGATGGGTAGAT------AGACTGTGCCTCTATTCTGAGATGTGTTTGG-TTAGAGCTTGGCC-TCTGGATGGAGGGATCTTGCAATGGCTATGTTTTCCTGGATTACTGCCTG----CCAGGAAGTATGCTTGGGAGCAGCTA-----AAGGTAA-CATCTCTGAA----GCAGCTGTTGCCCAGCTTAGTAGCCTGTTGTTTTTTAGCTCTTCTGGCAATGAAGACTTTGCCTCTTCCTGTTCATTGGAAAGAgcttaaagataaaaatcatcatatttttatttcattctttttgtacCAGAGCCAACCTCACTCCCTCTCTT----------------------------GTTCTATCCTCTCCTTTCTTTGGCTAGAAAATCTTTCTGTTA---GCTGAAGAATGACTTAGTTCTGGTATATGTAGCTTCACAGTCAGATATGACCTTAAAGTCC----AGATGTAG---------CCTCTGATCATGCATTCATTGTAAGATGCTTTCTGTAAAATGCCCACCGTGGAACAGCCTAGTGCAGGGACAGGAGCACAAACTCTGGTACTGGGATGCCTGGAATCAAATCCTGACTCTCACACTTAGCTG------AATGCTTTTGAGCACATCACCTAACATTTCTGTGCCATAGTTGCCTCAGgcttaaaataaagataatattgaTTTACCTATTTCCAAGGATTgctatg-aggattaaatg---agttaataaaaaatttttagaacAGTATCTAATATATAGTTCATGGCTCAAtaagaa

a score=96926
s chr3           146283404 4254 + 160039680 [encoded data, 4846 characters]
s HiC_scaffold_1 132763019 4489 + 233722169 [encoded data, 4846 characters]

a score=7367
s chr3           146284645 264 + 160039680 TCTGCCTTTCTTCCTGCAGGCGCCTTCGTGGTGTGCTGGACCCCGGGTCTGGTGGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGCACTGCTCAACTCCGTCATGAACCCCATCATCTACTCGTACAAGGACGAGGACATGTACAACACCATGCGGAAGATGATCTGCTGT----------------------GCCCTGCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCACC
s HiC_scaffold_1 162744688 280 + 233722169 TCTTCCTGTC--CTTGCAGGTGCCTTCATCATCTGCTGGACTCCAGGACTGGTCCTGTTACTACTGGACG---TGTGTTGCCCACAGTGCGATGTGCTGGCCTATGAGAAATTTTTCCTCCTCCTTGCTGAGTTCAACTCTGCCATGAACCCCATCATCTACTCCTACCGAGACAAAGAGATGAGCGCCACCTTCAGACAGATCCTCTGCTGCCAGCGCAGTGAGAGCACCAACGGCCCTGCGGAAGGCTCTGACCGCTCGGC-TTCCTCCCTCAACCACACCATC

a score=18951
s chr3           146289886 1565 + 160039680 tggTCATAGTTGGCATATGACCATGGACAATACATATTGACATCAGCCATCCCTCATGTCTCTAGGATCTTGCTATAAGAGTGAATGG-CAAAGGTAGGTATAAAATTCAGACATTGTAAGTCATTAGAAGTAAGACTT-ATTGTCCCTGTGGTTGTGAAAGAGAGAACAGGTCAAACCTCTTACAGAAAGCAGCAGTATTTGATCCCGTGAGCAGAGGGTGGAGTTTGTCATTGTTTTGAGGGAGGGTGACACTAAAGGTTCTTCATTTGATAGGAAGAAGGGAGTGATGAGTGCACCTGGGAGGAAGTTGCCATGGA--GATGACCTCAGTGTAACACCTGAGGGAACTGAAAACCACGTGATTCAGTGAGTGTTCAAAAGAAGTTGCGACTCAATTAAGTGTGCTATTaacaacaacaa-----------------------caacaacaaAGTTGGTTTCTTAATAACTCTGTATAACTTCAGACTCCAAAGAGCCAGTGTTTAATAACAATA----------------------------------------------------------TGTTATCCTA---------------------ATGAAGAAGGCT--------------------------------------------------------------------------------------------------------------TTTAA------------CTCTTAGAGCAATCCAGTTTCTGAGAATTTATGCTAAAGAAATGATTCCAAACCAAGAAAGGGCTTTGTACGCAAAGGTGATTAGAAAAGCACAATT-----------------------------------GATGGCGAG-------------TAGGAACTT---------------------------------CCAAACTCTGC-ACGTATT------------------------CAAAGGTGTGATGTGA---------------------------------------TGCACCacagcccag------------------gccacaattg---tggctccttcatatgctagccagg-gactgttgacaaatcactctgtgccttagcttctctatccttaaaggataataattctatctcattcatcaggttttatggagctcaaaggaatagtagctaaaatatgtagaagaggactgggcacTGGGTCTGCATCATTACTTATTAATGGAATGCTGCCTAGCAATTTA---AAATTACAGGCAT---GAATAATCTAATATCCAAATCATGTATATTATAGACTTTTCTGACAGACAATATTGTACaaagagacatgtcttaagaatgacgtaagggcttgggtcagagctactatgaaagtaaaattaccttttgcagaaacaggacac--cagaaacacccca--tgttgggtgaat---------agaattcagttttagttgtgacattagttggttttttttttttaat-------agacaaaaccaggtggagtttccaacaaaacagccaggtaaacaaatctaga----------------taggag---atttcagtctcagagatattcctgcatgagga----actttgaagcccgagctgag---aattcactcagctagtgagtgaatacagacacagtgacaggctggaaaatcggaccctgaggattctcagtgtctgaaagacagagaaacaagaagtcaatcaaggagacagaaggcaaagcccgtgctgaaggaaaagatccagaaatcca-------cagagagcgaataactgtgtcaaagactctgaggtaag----gcttgaagtttcgctgttaatttggccttagaagtta-tgagggcgttgacaccggagtttcagtggcatggtggggatgagagccag----cttgaaatgggttcaaaggaaaatgggaggtgaggtttggaagcagtgaggacggctattttt
s HiC_scaffold_1 132770963 1907 + 233722169 TGGTCACAGTTGATACACAACTATGGCACATACATAT-GACATAATCTTTCCTTCAGGACCCCAG-ATCTTGAAACATTAATGAATGGGCAAAAGTAGGTATATAATCCAGATAGGCAAAGTCATCAAAAGCCAGACTTCAGTGTAGCTGTGCACCTACACAGTGCAATAGACAAACTCCTTTTCAGAAAGGAATAGTAATAGACCT-------AAATTCCAGGGTTT---ATGGTTTGGGGAAGAAATAACA-------TTCTTGGTTTGATAGAAATGAAGGCCAAATTAATGCACCCACGGAGAAGTTTTAATGTAAGGTTTATCTCAATTTTACATGTGAGGAAACTGAAGACCATAAAATT----GAATGTTTATGATACATAGTAACTAACTGGAGG-----ATCAAAACTAACTAAATTTTTTAGATTGTTctctatttagaaaaaaatgtagttttctAAGAATCTCATGTAACTTTAGATTTCAAAAAAGTGATGTTTACCAAGAATGGACTAGTCATTTTAGTAATTAAGAATCTTTGTGCTAGCAGAGTGTGGTGGTGCgtacttataatcctagcactcaagaggctgagaggcaggaggatggctgtaagtttgaggccagcctgggctacagagtgagctgaaggccagcttgcactgcatagtaaaaccccatctcaactagataaaaataaataaattagtaaaattttaattttaaaaaatctttgtgcTCTTTGAGCAATTCAGCTTATGAAAACACATGCTAAAGAAATGATTCTAACCAAGGAAAAGGCTTTGTACACAAAGGTGATTAAAACAACATGATTTTCCAGGTGTGTATtccattaatcccagcacttcagaagctgaggcaggaagatcttcaggagtttgaggccagcctgagctgcataatgaGTTCCAAGCCAaactgtactacatagcaagaccctgtcttaaaaaaacaaacaaaaataaaacatgacttATAACCATTTCAAGCTTCTAAATAAtctaaataaagtaaaacataGTCAAGAGAGTTGAACACATAAATGCTAAAATCATCTTGGCTCTTTTACATGCTAGTTGGATGACTG--GGCAACT---TCTGTGATTTAGCTTGTTTATGTAATGGGGTTAGTAATCACATCAGTCTCATAGGG--TTATAGAGATTAAAGAAGTTATATGTGAAGCATTTAGAACAGAGTAGGGCATTGTGTATG----------------TGTAGTGGTTGCTATTAGTATACATAACTTACTagcattgaaaataatttaa------------------tttagaaTTTACTGATG---AATTTAATATTAAGAGATATGTCTAAAGAATAACTTCAAGG---GATACTGAGCTACTACAAAAATGGAATTGCTTTTT--AGTAAGAGAACAAGGTAGGAGTGGCTAATGTGTTGGGGGGAGTGGGATTCAGGAATTCAGTTTTAGATGTG---------------TTATGTTTGATGCCACAGAGACAGAGCCAAGTGAAAATGTCAAGGAAGTAGCCAGATAAATGAATATGGAGTTCAGGGAAAAGGTCCAGGCGGTAATATCAGTCTCACAGTCA--CCAGTATGTGGGTGGTATTTAAAATGGTGAGATTGGATAAAATCGTTTGGACAGTGAGTATAGATAGAGATAAGAACAGATCTGAGAG----------------CTCACCTCCT--AAGTCAGACAAATGATAAGTCAGTGATGGAGACGGAAAAGAAGTCACGAG-TGTAGAAAGAGAAGCAGAATTTTGTGAAGACCTGGGAACAAAAATTTTTGTCgaagacagcaaagcaaagaCTGCTTCAGACTGAACTGTTGATGTGATCTTAGGGGTTATTGGTGACCTCGACAC--------CAATGGAGCTGTGGGGATAAGAGCCTGACCAACTGAAAGGAGTTCAGGAGAAAATGGGAAGAAGGGGTTGGAGATCATGAGGACagatgacttt

a score=26445
s chr3           146304421 630 + 160039680 agggagggagggagagaAAATAATGTGTGTAGGGAAT--TGGTAAGGAAG-------CTTGCCACAGCCAGATGGGCTAAGCCAGATGAAACAATTAGCAAGGATCCAAACAACAAATGAGTGAGGAGAGAGGGCGTCCAGAC------------CACTCCGCAGTTGACGGTGTACTTCTG-CCTAAGGAAGCTGCGTTGCAAAACTGCTAAATGAATGTTCCCTTCATTGTTTGCGCGATTCGTTATTTT--GGAAAAATGA---CTGTTTGGCTCTACAGAGATAAAAGATGGCCTCTAAGCGCAAGCTCATTATCATCTGTCACTATGGCCGGGGAGTCTTATGTGTCCGCAGAATCTCCAGATCTATATTTCTCCAGCCTTAATCCTGGGATCGATAGCCCAACCCAGCACTGCTGGTAATAAATAGCTAGCACTAAATGATAAAGTAGGCCACTGTCTTTCATATTATTTGGCTTTCAAGCCAATCAATTTTACAGCTGTCTGTCTGGGTGCATAGGGGAGAAAAACTTCTAAAGATAGCCAAGAGTCATATGAAAAACTACAGCAGGCTGATAAAATAAGTCTTTATTTCTCCCA--CTTCCTCATAGAGACAAGATCCATGTCAGAATGCTGAGCATGCCGAGGATGCAGT
s HiC_scaffold_1 132774538 642 + 233722169 AAGGATGCAAGGA-AGAATGTGATGAGTGTAAGGCATACTCGGAGAGAAGGGTATTTCTCCCTAAGGCCAGGTGGATTGACGtaaatgaaggaataaataa---tCCAATGAACAAATTAA--AGCACTGAGAGAATCTATTCTCAATAGTCATACAGTTAGCAGCTAACAATGTATTTGAGACCCATGGAAGCTGCATTTCAAAACTGCTAAGTGAATGTGCTATGCTTTGTTTGcacaattcattattttttaaaaaaatgatagctATTGGGCTCCACTGAGATAAAAGATGGGCTCTAAGTGTAAACTCATTATCATCTGTCACCATGGTTTGGGAGCTTTATGTGCCCGTGGAATCTCAGAATCTATATTTCTCCAGCTTTAATCTCAGGGTCGATATCCCAACACAGCACTGCTCATAATAAATAGCTAGTATCAAATGATAAAGTAGGCTACTGTGTTCTATTTTATTTAGCTTTCAA-CCAATCAATTTTATAA----CTGTCTGAGtgca----ggaaaaaaa--tctaaagacaactgagaaTCACATGAAAAACTAGAACTTGCTGGCAAAATGAATCTTTATCTCCTCTATTCTTTCTCCTTAGAAAGAGGCCTAGAGTAGACTGTTGATTGTGCCTATAATAAGGT

a score=6029
s chr3           146312716 420 + 160039680 CCATCTTTTTGAGCTTTTGATTTTTCTTTCTCTTTCTCGGCGttttgaggcaggct------------ttcaagctaaccttgaacttgctatgtagacaagactggtctggaactcct---gatcttcccgctctcccctcccaagtgctaggattacaggtgtgtaccaacatatcTATTTAAAAAAAAAAACTTCTTTATGAAACATAATATGGAAGCATCAACATGAACATAAGAACAGCATCCTCATAAGGGTTTAGCTTAGTGAATTCTAC--ACCAGTGCACACCGATGTATCTACACATTAGGATTGAAGCACAGCGATTTCAATTTTTTTTATTCAGTAGAAATGCAATTAATAGAAGTCAAACCATATTAGTGTGTATCATCCATTGGCACTTAGCACCTTCCTGGTGACGTGCAGCCATTTCCTCT
s HiC_scaffold_1 190073523 370 + 233722169 cctttcttttatattttatgctctttttttttttttttgtctttttggaacaggctctcactatgcagttcaggctggcct-aagctcactttatagcccagactggtctcatgcttgcaaggatcctcctgcctcagcctcctaagtgctaggattataggcgtgtatcATCATGCCTGTCTagttaccta--tttatttatttac--ttatattgatttatttatttgtgc------------------caaggattgaactcactgcattacacttgccag-gcagcc------acttataccactgagctgaatccctagg--CCCAAGTTCC-----------------------------------CCATTTTAAAGTGTGCGATTCATTGGCACTCAGCACTGTCCCAGTGTCATGCAGCTACTGCCTCT

a score=18906
s chr3           146315167 812 + 160039680 GCGTCTCTCATCCATGGGGTCTTCAGG-TTACGATCCCTCTTCACTGGGCACTGAAGGACGAATTTTGACTCACTCCACTTGGAAGAGAAAACCCC--TGTC----------ATCC-------------------------------CAGAGTAAGTGG--------TGAGCCAGCGCTCTGGGCTTAGCATCTC--TAGTCATCACCCACTACGTCTAATGCAATGGGGGAATTTTGAAGTAGGTTTGTTTTAACCTGGTAGAAGAGTTTTGTCTTGTCCATAAAACCAACTTGCTGATTTGCTTAGAAGAAAAAAAAAAGTGGCAAGATGCCTTTTGTTCTGCTTGGATTCATTCGCCTTGGTAGG---CTCCAGCGACTTTACATCATTCTTC-TATCAAGAAGGGCAGAAGAATGCCAAGTCTTGAGAGAAACAAAGCTTATTCTTTGGAATGAAGCAATGCCGTTGGAGGTGGACCAGCTTCATTTTCCACGAAGAAACACGTGCTCG---------TCCAGTGAGAGG-GCCTGGGTTTGCTCAGCTCAGCTTGCATGCTCATCATTATTGCTTCTTGGAAACAAGCAGTCCAGCTGGCAGCTGTCTGTCCCACTGGAAGGCCCTGGGGGTGGTTGACT-----CTCCTCCCGAGACCATGTGGTTCATTATTTCAGAAGGAACCTGGAACTACCCTTGTCTG--CCAACTCGCTGGAGATGCGACCTAAGAAG--GGTCTCTTCTCTCGGGCTTCTCCTGACTCCCCCAGAAAGCTGTTAGGAGTTTGCTACCA-AAATACCCTAGAGAAAAACAGATGCTGCA-TCTAGGCCCTGAGCCTG--GGGGTCAGA---GGTCACAAGGTTTGCCGAGCTGGTGGACATTGT
s HiC_scaffold_1 132796392 858 + 233722169 GCGTC-CTTGTCTATATAGTCCTCAGGGTCATGCTGCCTCTTTAGCAGACAGCGCA------CTTGTGACTCCATCCACTTGCAAGAAAAGATCCTATTGTCCAACAGCTACATCCACTCTGTGTTTATAATTACCCTGACTGGAACCAGAAAAAGAAGCTTAGGAATATATCACCAGACTGGGTTCAGCATTTTATTCCTTATTACCTTCTATATCTAATACATTTGTTGA---TTGAAATAACTCCTGTCTTACCCGGTAGCAAAATTCTGCATTTCTTCTAAGACTGGTTGACTGATGTGCTTTGAA--------AAAGCAACAGAATGTCTTGTACTGTGCTTGGATTCATTTCCCTTAGCAGATGACTTCAGTCACTTGTCATCATTTTTCATCTGACAAATCAcaga--------------tgagagaaataaagctggcTTCTTGGAGTGGCTTCATGCCACAGAGGGTGAAACCACTTCATTTGCCATGCAGACCTGCGTGCCTGCTTAGGACTTGCAGAGAGAGGTGCCTGGATTTGCTCATACTAATTGG--TGCTCAAACTACTTGGTTGTTTGAAGTGGGCGGTCCACCTGGCAGCTGTCTGGGCCTCAGGAATGGCCTGGGGGTTGCTGACTCATCCCTCTCCTCAAGACTGAATGGTTAATTATTTGAAAAGGAGGATGGAGCCAAACTAGTCTGCCCCAACCTGTTACAGGTGATGTCTAAGAAGAAAGCACCCTCCCTAGCACTTCTGCTGACACCGGGAGAGACCTTTT-GCACTTTAGCACCACAGATAGCCTGGGG---AATTGGTGTTACAGTGTGGGCCCTAAACCCAGCGGGGTCAGGAACGGTCACAGGGTTTGCTGGGCCAGTGTACAGTGT

a score=23300
s chr3           146318845 495 + 160039680 GGGCCTCAGGGTAGACCCCCTTCTGGAAGGCCCTCC----------------AATTTGCCCTTCAGAATTAGGCTCCCTGATGGGAGCCATATAAATATGTATAAAGCGTGGCGTCTTTAAATATTATACAGGAGGAGAGAA-CGACCAGGTTCAAATGATAATATTTTAAGACGCCACAGGGAGCCTGCGCTGCGGCTGGATTAG-----TCATTCTTTGTTGTGATTAAAGAAGCCCGTGTGGGTTTTTCCTCTTCCTCAGAGACAGGCCGTGGGTTCTCTCTCCCCACTAAAGCACTGAAGGAGTTTTCGGATCCCTCAGTGCGCTGCGAACACACTTACAGCGCATTCTCTAAATGACAGGCAGGCTTAAGCACACTAATGAGCCCCCTGATTGCTGCAGCCCTTGAGAAATTAATTAACGACAATGGAACATGCCCTTGCCTTCCCTGCTGTTCTCTGTGAGCTTAGAGCCCTGGAGCTAGCTGCGCTTTGATCCTCACCCAGCCCAGAGCC
s HiC_scaffold_1 132800184 509 + 233722169 GAACCTCAAGGCAG-CGTCCTTAGGAAGGGCCCTGCCAAGCCCCAGCCCAGGGATTTGTCCTTCAGGATTCCACTCCCCGCTGGGAGATATATAAATATGGATGGAGTGTGGCATCTTTAAACATTGTTCAAGAGGAGAGGAGCAGCCAGGTCcaaatgataatattttgaaaaaccaCAGGGAGCCTCTGCTGCTGTTGAGTTAGAGTTGCTCCTCTTTCATGTGATTAAAGAAGCCCTTGtgggctttttcttttcctcagagaCTTGCCACcatttctccctccct-ctgcagCACTGGAGgatttttaagatttctaaatgCACTGCATTTACATTTAGCACTCATTCTCTAAACGAAAGGCAGGCTGAAACACATTAATGAGCCTCCTGATTACTGCAGCTCTTGAGAAATTAATTAACGACAATGCAGCATACActtagcagtcctcctg--ctccgTTACCGGAGAGCTCT---TCCAGCC-TGCTGTAATCCACGCCCGGCCAACAGCC

a score=11363
s chr3           146320831 667 + 160039680 TTCATCCACTGGTGGAGTCTGAAGGGTTTCTGAGCCTTGGCTAGTGCTGACAGCATTACAGTGAACGGGGGAATGCTCTAAACGGCTGTCTTGAGATATGTTCCCTTTGTCTTGATGGAG-ATGCTTTTGGGGAAAGTTCTGCCTGCAGGAACATCCTTCAGTGACCTTTGTGTCCCTCCTGGGGGCTGGCTGA--------GACAGTCAACACACAAAGCTACTGCTTGAACATGGATAAATACCACAGCCACTTTGCAGCGTGCTGACATTTCACACCAACAGGACAGGATCGGAGTGCTCTGCCAGCCATTTTGTGTGGCGTTTCTCTTCTCTTT--------GGGGCAGCACTGTAGGCGATCCTTTGCAAGAGACATAGTGCCAGGGGTATGTCATCATGACCAGAAAGGTTGGTGTGGTCATGGCCATGGTTAAGATGAGGACTCTGAGCTTCAA---AGATCACTGATGT---------AGTTGATCAAAGCAGTGTGGTTTCTTTGCCCTTCATATTTCTATTTACTCATTTGCATATTTGGTCTGGCTCTGTTCTAAGCTGCAACTGTGTCTGTTAGGGCCACACTGCATCCATGTGATTCTGCTGGGTGGGACA-----TAGGATGGC--CCTTTTGATTGTCCTTTCTGATCTCAGAGATA--AGGCTCACCCTGCT---------CCAGCAAGATCTAGAGA
s HiC_scaffold_1 132802063 684 + 233722169 TCCATCAACAGGTGA---TTAGCTGGTTTCC-ACACTTGGTTACCATAAACAGTGTTGCAGTGGACATGGGAATACTCAGAATGTGCTCTGTGAAATATTTCCCACATGTCCTGATAGAGGATGGATTCTGTGCAGCTCCTGCCTGGAGCAACACCTTTTGCTGACCTTGCTTTGCCTCCTGTGGGCTGGCTGAAGACAGAAGGCAGCCAACAGAAGAAACCACCCTTTCAACATGGATAAATTCTGGGGTAATTTTGCAGTATGCTGGCATTTCATACCCAAGGGACAGGAACTGGGCTCCACCCCAGGGGTTTCATGGTGCCTCCCTTCTCACTCTTTGAGGCCGAGGCAGCGAGGGACAAGGCCCTTTGTAAGAAGCACA-TCCTTGAGGAAGG-----GTGAACAGAA----------GACCAT--CTGCTGTTAAGATGAGGGTCTGCAGGCTCAGTGTGGATCCCTGGGGTTTTGGGTTCATTTGCTTAGGATCATGTGGCTCCCCCGCCCTTTG-GTCTGAAGCTACAAAACTGC------GAACTGACT-GATTTCAAACTGCTGTTATTTCTGCCTCTCCACCCTTGTGTCCTTGTGGATCTACTTAACGAGGTGCCCACCAGGACCTCTGCCCATGGATCTTTGTTTCTAACATCAGAACTAGCAACCTCACCAGGCTGAGTTCTACCCACCAGGTTCTTGAAA

a score=11556
s chr3           146321486 799 + 160039680 AAGATCTAGAGAGTTGGTGAATCCAGTGCTGGGCA--------GCACAATCATGTATTTCAGCTATCTATTGTGGACTTGGGTTTCGATGTTACTCTCCA-GGCTGTGCAGTTTCTCCTAAAATGCAAGACATGTAAATCCCTAGCACTCTCAAAGGTTAGAGCAAGCAGATGTATGGTTTCCCAAAGCCTGCTGCAGAGACTCAAATGAGAaataataataataataatagtaataaATCAAACAAAACAAGGAATATCAAACAAAAACGTTTGCTTCCTGAACACTGCATAATTCAGCAATTGCAATAATTCATGATTA--GTTTAGTTTCCCTTTATCTGCATTGAACAGTGAGATCTTCATGATACAGAAGAAGCTGCCATTGGTCCTTAGCTGGAGGTTTGTATATGAGATGGACCTTATTTCTATGTTGATAT-ATATAATAACTTAGGTAACTACGAATATAAATCTTCTGGGCAAGGCCTGTGAACAGGTACAGTCATTAAAAGCTATGGTA-------ATGCTGAACTTAGGTACTGGGACAACTGATCTTGTCACACTGGTGTGGAAGGGGAGGGCAGACATGCTCCAAGGAATTCTGTCCCCCTGCCATTCCACATGAAGTCACAAGTCAGTGTTCATGCTAGACAATCCTTGCTGGGTTTCCTAGACAATGGGTAAGTCCCTGGCCATGGA-------------------------------------------------CTGTTCTCTTTTCTTGTA---------------TTACCTTTTTCT-ACCGATGTGG-CTGCTTCTTGGGTGTCTATCTCTTC--TTGAAGGAAACTTGTACTTGGGGTTTTCTGGTCAGATTTCTGCCCAAGAG
s HiC_scaffold_1 132804395 834 + 233722169 AAGATCCAAATGGGAGGTAAATG-GGTGCGAGATAATTCAACTGCACAATAATGCACCTCGGCCACCAG--GGGAAACTGATCTTAGAGATGGCTCTAGATGGCTCT-------------AAATGCAATGCTTGTAGATGATACGCACTTTCACAAGTTGCTACAAGCAGATGTGCAGCTTCC-AAAGCCTGAGAAAGAGA---AGTTGAGCATGAGGTGAAAGATTAA--ataacaaataggaaaaaaaaagagaaagaaatgcagtAATTCTACTTCT---ACA-----------------TGCAGTAACTTGT-ATTACGATTCAATTTTCCAGTGTCTACAATGAGCAGCGGGATCTGCAAGGTAAAGGGGAAGCTGGGTTCGGCCCTGGGGTGAATCATTATCTGTGGAGTGAACACTGCTTCCGCGCTAACACCGCGTGATATACAAGGTAACTGTGGCTCTAAGTCTA--GGATAAGGCCCATGAACAGAT---GTCATGAAAAG-TGTATTAGCCTGGCATCATGAACGTGTGTGT--GGAGAATGTAACTTGCTGTACTAATGTGAGGGGCAGGCCCAGATATGTGGGGTGGAAGAGTGTTTCCTTTAACTTCCACGTAAAGTTACGTGTCTACGGAGTCACTGGACAAGGCTTGCTGGATTTCTTGGGCCATGTTTAGGTCTCTGGCAATGGACAGgttcttcttcttccctctcctcccctccccttctctgaaTTCTCTTCtattctcttctcctctcccctcccctcctctttcacttttttctccccAACCTGGACTGTTTCTTACATAATCATATCTTCCGTTGAAGAAAAGCTCTAC-TGGGGCTTTCTGAGCAGCACTGTTCTCAGAAG

a score=38110
s chr3           146326861 1767 + 160039680 TTGTGATTTCGCTGGCCTGGTAGCCTGGTGTAGGTCACTTTAAGTA-GAGTCTGGTCCTTCTGCGTCTCAGCCCACAGCTTCCTCCACTTGCTGACTGCACTGTCTGGCTTGGCAAGGAAGAAGAGGAAACC----CACACGTTGCTATTTAAATCACAAGCAATTAATGGTTTTCAATAATGTTTGTGGTAAaaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaataaatgaagaaataaatGGTCCCCCTCGTCGAACGTGTAAAAGCAAATCCCCAGACTCACTCAAACAGTGGGTGATTGGACAAGGAGCCCGGTCGCCATTTTTGTTTTATTAT----AAATTCACCACTCACCACTGGGATACTTGAAGAGTCACCTCGCC-AGTTGTAAACCTTG-TTTCTCCTTGCCTGTACAATGGACATCAGGAA----GAGTGCACTGACCTTGCTAGATAGATCAGTCAC-TGCTGAAGAG-------TTTCCATTCAAG----AGGACAGCTGTCACCAAGATCTGCATAATACTC-GAGAGATGAGCTGTCATTCCCAGAGCTCTGGTAACATTCAACAAACACCGGGAGGTGTGAAACCCGTGCCCCCTCCCTCTcccggcgcccccccccccccccACCGCTCAGATGAAATGAAATACATGCGTCCTTCCCCCACCCCCCACTCCCTGCTCAGATAGGTAAAGCCATGAGGCTCAGATAAAGTCTAGGAGGAGTTTCTATTCTGATGGGGCTGCTGGAAAAACAACCCTATAGGGACCACTGTTGGGTGAAAGATGACTCCAGATCAGC-AGGAGACCCGAGGGGACCCTCTCACCCCTCTCTATTTCAGATGTCTAGAG---------------AGGGA------------CAGGCACTGCATGCATGCTTAATGAGTATTAACTGGG-AGCAGCTGAAAGCATTAAGGACCAGCGTGTAACAGATTAGCTCACAGGGAGTAACCCAAACACATCTCCTTGGGGTTACATTTATCAGGGCACCTCGCTGGGTGTTCTCGCCGTCAGGAA-CCGCTTTGTAACCACATGCCCACTGCACCAAGGCCTCTGCCTTAGGAAGCGGCGCTGTGTTTGTTCACCCAGCGGAGCTTCCAAGGACATGAATTAAACATTTGTTCCTCCCAGCTCTGGCAGTTTGCCGCATTCTTGCGGAGGAAAGTCTAAAATGGCTTTGTTCTTTTTGCTGCAATCAAGGAGGGACCTGGAAGCAGAAGATACGGTAAGGCGA---AGATCTTTAATTTGGCCACTAGGTGGCAAAAGAGTTCTACTGAAGATACTGCAGGCAGCCCAAGGCACTCTTAGGGAAATCCTAGA------------------CAGGTTTTCAGAG-CAGGACAGGTTCTGTGAGAAA--------------------------------------AGATCTCAG--GGAAATGAAGGAGCTAAACTGATGCGAAC---------------AGCCTCTAGCACTCTGATCAAGACTACAAATCAGGATCCCAACTTCTAGAACAATCTTGTTCAACAAGCCACTCCGTTTCCCCCTCTTTAGGTATGCTCGTCTTGTATTCTCGGCGAAAATACAATAAGGAGGTGAACGTGGCATTTCAAATTAAAATTTAAACG----TGCAGTTGC--CAGTCTC--GCGGTAGACAC----CTCTGAGATGACCCAAAGGCTTCGGACTCATAATTC-TAACCCTCTTATGTCCTCGATCCCACCCCTTACGTCCTTACCCCGGCT--GACCAGCAAATGTGCAGGTCAAATGCAGATGGAGACTCTAGCCAGCAGACC-----------------CGAATCCAAGCCCATTTGCCAGGTTCCCAAACCTT
s HiC_scaffold_1 132807864 1698 + 233722169 TTTTAATTCTCCAAGGCCACTAGCTTGGAGATGGCCCTGTCAAAAAAGAGCCCAAGCTTTCTG--------------GCTTCTTCCACTTACTGACTACATTATCTggcttggaaagaaaaaaaattaaacaaaaacctACATTGCTGCATAAAGTACAGGTAATTAATGGTTT-CAATAGTGTTTGTGGTGAAAATTAATG--------------------------------------------------TAAACCAATGACG--------------CTTCACTGAACTGTGAAAAACAAACCCCCA----------AACACTGCATGACTGAACAAGGCAGTCAG--AACATCTTCGCTTTATTATGTATAACTCTACCTCTCCTCGTCTGGATACCTAGTGAGTCACCTAACCCAATCATAGAATTGGCTTTCTCCT---CCATACAGCAGGCACCAATAGTactgcctgcattggcctctctgACTATGGAAACCAAATGCAAAAGACACAGAACTTTCAGGCCCAGGTGAAAGGCAGAGGCCATGAGAGCAAGCTAAGCAATCAGATGGAGGGGTTATAATTCTGGGATCTGTGTCAACAGTTAACGAATACTAGGGTATGTGG----------------------------------------------------------GATAAACAT---------------------CCCGCGGCCCAGATGGTTCAAACTCTGAAAGTCGGGCAGGCTTCAGAGGCAGTTTTTATGTGTTTGGGAATGTCAGGAAAAGGTCCTT----------CCACTGGACAAAGGACTGTTCCGGTTTAGTGATGAGACCCAGGGAATCCTTCCCATGGCTTTCTACGTCAGGTGTCTGGAAGAGTGTTCTGACAGCAGGGAAGGCTCAGGATGCAGGAGGTGCACGCATGCTTAATGAGTGTTAACTGGGGAGCAGCTGAAAGCATTACAAACCAGCGTGGAACAGATTAGCTCACGGGGAGCAACCCAAACACATCTCCTCTGGGTTGCATTTATCAGGGCACCTCGCTGGGTGTTGTTGACATCAGGAGTCTGCTTTGTGACTACATGTCCACTGCGCCAAGGCCTTTGCCATAGGAAGTGGCATTG----TGTTCACCCAGCGTATCTCTCTAGGACATGAATTAAACATGTGTTCCTCCTGGGCCTGGCAGTTTGCCACTCTCCTGCAAAGGAAGGCTTGAAATGGCTTTGTTC-TCTTGCTGTGACTGAATCGCGACCTGGGAGCGGAAAGCATCCTTGGGCGAGCCAGGCGGACGAGTCAGCCACTAGGTGGCAGAAGAGCTCTATCAATGAAACT--AGG--GCTCTCAGCACCCTCAGGCAAATTCTGGAAGAGAATTTGAGGATCCCAAGGATTTCAAAGACAGAGTAGGACCTTAGAGGAGGTCATCTAGGCCAACCACGTCATTTTATGCCCGAAGGCAGaattcagaaagagaagaaagagtttGCCTGCTGTAAACAACCAGTTAAGTGCAAACCTCTGGCATTCTAGCCAGGGCTACAAACCAG------------------------TCTCAATGAGCTATCACATTTCCCCATCTCTAGGCAT-TTTGTCTTGAGTCTTAGCCATGACTGCAGCAAGAAGCCT-ACTTGGTGTTGCAAATTAAACACAGAGAGGGAATGAAGTTGCGGAAGTTTCCAGCTGTATAGACAGGGACCTCAGATAACCCAAAGACCT-GGCCATGAAATACAGAATCCTCTGGTGGCCCTGTTCACA----------------CAAGGCTAGGTCTGGGGATTGTGAAGGTCCAATGAAGATGGGGA-TCCAACCAGCAGACCTCCATTCCGCTCCCCTTCTCATCAAATGCAAATTGCCATGCCCCTGAGCCTT

a score=28796
s chr3           146329740 1934 + 160039680 AGGTGACTCTGGATAAGTAAAA-TGAAGGCAAGGTCCCGCACATTGTGATTGTTCCTGTTCAGTATCCCATATTGTCCACATCCTTAATAAGG----------------------------AGCAAaaagatcacatttcccagtctccctggcaagtggttctcacatgattaacttctggccaatggaatatcaacacctggtgggttaatttccaggaaagcttttaaaaacagaatatagacgtagccttttccctccctcttttttctttgcttcccatctagaagacagattttatggccgctattatcgtggatgcatgtgaaacatgaagcagctgtaggtatggaaaccacgtgctgacatgcagacagagagagaaaaggtcctgatcaccccgcagaactcccaagccggaaccagtctcactgcctcca-aactATGCAAGCATTACACAGCACTCCACGTCAGGAGTTGGCAGCCAATAGAAACTT-GAATGGACACAGGAGTATGAAAACCTGTGAGATAGAGA--------------------AAATGGTGAGAAACAGAGCTC--TCTGTCTTTAAGTATATAATTTTTGTGCATAAA----AAACTTTGGAGGTAAGAGTGTAC---ACACACACAT-------------------TGTTTTAATT------ATGGCTGAGGGATATTGGGCCACACAACAGAACAAGTGACATCAACCGAGCCAA----CAGTAGCTTGGTCTCAAAGCATAATCTGCCCCAAGCTTCGCA--GGTCCCCTCTTCCTGG---------------------------------------------------GTCATTCAGAAATCGGATTGTCTTGTTGAG-GGAAGCTTTAGCAGAAACAAGTTATGGGGAACATGTT--TCTTGGTAAAATAACAAAAGCACCATCTCCTTTTCTGTGCAGT---TTTCTTAAAATCTCTTATGCACACGTCATCTTCTGT-------AGGGTAGGGAGCCACATTATACAAAAGCCTTACCATGTATTTAGGCATCCTGTCAAAGCAATAGGCAGTTCAAGCCATTCTGGACTGGGAGGACACTCAGTTGATACTTTTAGC------------TCTCTGAGGAGACTATAAATTCACATTGGTTAAGATTTTAAGGTTAGGGGTCTAGGATCCCCATAGAAGCCAATCTGCCTGCTGTTCTTTTCCGCTTTGATATGCAGAGTAAGAAAGGGGTTGCCAGGCAAAAAGGTGAATTAGAAGTTATTTTGTAAATGCTGTAGCGTTAGTTCATGCGTTCATCTGTCATGTCCATACATCTGTCCATCCGTCCACCAGCAGTAGGGAATGACACTCTGTGTCC--GGTGCAAAGCTCACTGGTAAATAGGACAGTCCTTGGCAGAAAG-------------AGGACTCACATGAAGATGTTCTCATACAGAGCCAGTGCGACCTC---------ATTTTATTTCCCAACCCAAGGTGGGGAAAACCCAACGGGATTACCAATATGAAAAAGTAGGAAG------------TAAAACTCAAGTCTTA---GGAAATATTGATTTTCCCTGGGTAT---TGACATGTTAGCCT------------TTGCATTGCCCCCTTCAG------------------------------------TGTTCATTGGAATACTTTATGTCACAAGAAGCTAGA---------------ACCTGAATGCTAAGTCATTCCATCTCCTG---------GCTTAGAGAGGTGGGCTGTTCAGAATACCGGTTTAGGGCAGTTCAAGATACCAGCTTAGCATATATCTGCTATA-TTTGCGTGTCGCCTCT---ACTCATGGTTGAAACTGGTTTGTTACTGCTGCAGTGTTGCAGGAAGTGACTTTTGAGAG---------------------------ATGGCTCACCGAGAGGCA----CAGCCTTTACAGAAGGACCATCATCG-----------TGTCAGGAGTGGGCAGTTCCAGCCCTCTGTGTTATGGTTGCTCTCTGCCCATGTGATACCTCCTAGCCACACACAG----------------------------------Cccagcaggcaggctctcaccaggtgtgaccccctgcaccttgcatttcccaggccccagaactgtaag---aaaagaactctggcttctttgttgattgcttaatttgcgccgttctattataatggctgaaaatcagacACTAAAAGCATCTCT
s HiC_scaffold_1 132811241 2164 + 233722169 AAGTGacaggagataaacaaaaatggAGGGAGG------CATAAACCAATCATTTCTATTCAATATCCAAT-TTCCCCTCCTCCTCAGCAATGTAGCTTTATGTGTGGTAGTAATGTGCCCAGCAAAAAGGCCACGTT-CCTAGTCTCCTTTGCT-GTGGTTCACACAGGGATACCTTCTGGCTGGTGGTGTATCA---------GGGAGAAT------GGGAG------AAAGCA------------AGTCattt---gctctctttttcttttgcttcctgtttgGAAAAGAGGCATACTGGCTGGAGTTATCGTGGACA-------------AGGCAGTCCTGGAACTGGAAAGCATCTGCTAA---ACAAGAACAAAGGGCCGAGTTCCTGGAGGCGCCACAGAGCTTCCAGACCACACCTAA----GCTGTCTCTGCAGTCATGTACTCTTCACACG----TCCTCAGCTGGGATTAGCAGGCAACAGGGATTTCTACCTGATACAGGAGGACAGGAAGGCATGAGATAGAGTGAGGAAGAGCGTCAGAGTATAAATGGTGGTAAGAAAAGATCCATttgtcttcatttataaaatttctgtGTATAAGCAGGAAAACTTAGAAATAAGAACAGActgaacacacacatacacacacaccccacaggaTGGTTTATCTGCATAGATGTTCTTTCTACATTAGGCCACACA---GAGTAAGAAATATTGCCTGAGCTAATGATCAGTAGTTTTG-----AAGCATGCTCTGTGT-GTGCTTCGCACTGATCCTCAATTCTTGATTCAACATCTATTTCCTAAGCTACTTTTTTGCAAACGAGAGAATAATTACAATCACTCAGAAATCAGATTACCTTGCCTTGCAGAAGCCTCAACAGAAGTGGGTTAttgaaaaccttttatttttgccCTGATAGTTCAAAAAACATCACTTTTTCTTTGCAGTAAGCACTTTTAACACTCCTCTGTGCAAGTCATCttgttccttaaaaaaaaaaaagacacacattaTATAAAAGCCTTACAGCATATTTAGACATTTCATCAAAGCAATCGACAGGTTGGCTCATGCTG----------ACACTAAATTG-TACTCTTAGCCCCGTACAAAGATCCCTGAGTAGACTATAAGTCATCATCGTTTAGGGTTTcaaggctaaaaataaaaaattcttataaaaatctaatttttattttttattttttaatgtgctaCACAGAACAATAGATGGT---CCAGGGCTAATGCTGGGTAAGAAGCTACTCTGCAAAGACTCTGGGGTTAGTTCATTTGTCCATCTGTCTTGTCCATACAGTTTTCCTTCCATCCAGC--CACCAGGGA-----ACTCCAAGCCCCAGGCACAGAACTCACTGGTGAATAAAAGAGACTTTGGCTGCAAGGAGCCCTTGTCCTAGATCCCAAAAGAGGATATCAAC-TACTGAACCAGTGCAACCGAGCTTGTGAGACTTTGCCTTTTCTCCCAGCATCAGCATAAATTGAT-GGACTGGTGATACTGAAAAGGAGGAAGGTAGGAAGCAAATAACACTAAATCCCTATGTGTTAATAATAATTTTCAGTTGCCATCCATGAAATGATACCTTTGTGCCAGGTACTTGACTTGCCTATCTcagttaatctttttaaaaactccccAAGACAGGAATTCATATTGGTTAGAATGCTTTGTGTTGCAAGAATCTGAATAGTCAGCTGAGGGTGGCTGAAACCACagtcatttcatctttttcatcttttcatttaaaGAGGTCAGCAGTTCAGGGT---GGTTTA--GCTGCT-AGGGTACTAGGTGAGC----ATCCTCTACAGCTTGAATGTCTCTTCCAAAACTCATAA--------AGTTTATTACTGCTGCAGTGTCAAGGGGTGGGATATTTAAGAGGTGCTTAGGTCAATATAAAATGGATTAATGGCTATCTGGCAGGCAACAGTGGTTTTGTTATaaaattcattctctctctctctctctgtctg-----------tctctctctctctctctctctctctctctctctctctctctctctctccccacacacagacacacacacaggataAGTCTTGTGATCTTATGCCATGGCAAGAAGGCCATCATCAGAAGTGTCCCTTTG-ATCTTGGATGgaccagcctccagaactataagccaaataaagCTCT--TTTCTCTATAAATTACCCAATTTGTAGTATTCTGTTacaacaacagaaaat-ggaccaGGACAGCATCTCT

a score=32707
s chr3           146334069 909 + 160039680 AGGGCTAAGGTGCTGATGGCCA--GGCTCTTGGATTCAGGCCACT---CCGAGGCCTGGCTCATATACTGCT------TCTGTCCTCCTCTACCAAAGTGTTTTTTCCTCGCTCTAGTTTTAAATGACT-GGCTGATGAAATT---CTCTGTGGCTTCCCTGGGAGGCTTGGTTCATTACGTCCATTAGTGCTTCCCCCATTTCTCCCCAGCAGGAGATTTTCAAAAGCATTAGTTCAAATGGCAGCCGCCTGCCCTCCAGCCAAGCGTTGACATT-CCCCCTTGC--TGTGCTGGATCCCTACGCCTCCCTTGGCAGTGAAGACGTCCCAGTTGGCCTTCCTACTGGGGGGGGGGGGGGACTTGTTTCTGGTTAAGAGAACCTGTGTGCCCTTGGGCCTTACAAGACTGGTATTCCTCTGCAGAGGTTGTTCCCTGATCACTAAGATAATCACGTTCAGAGCCTATGGAGAAAGTGAAAAAT-ACCCAGAGTGAGCCAGGCCTGCTTTCCCCGTCAGCTCAGGAGGCCTCCTTGTTTTACCCTAGCCGATTTTGATCACAGAGCCCCCATGGGGACCACCCGTCTTCCATTAGAGACCTCAC-TGGGGGATCCTGTGTTACAGAGACTGGGGACCTGGCTAGAGCTTCAGGCACGAACTTCCCTGCTGTGGGCA--cagtcaaataaggatgggaggacatatatctggtcttttgtgagagcattttgctctccaagtagctggatgaaaaatcagactctgtttcattgttaagcatccagaacgaattattaactgagtgtaaaag-cagcactaggtgggactag----gaagag----ggacaatttgaggctcagaatattaaaaatgaacattccaaatAATGGGACTAGCTCAATAATTCTAACTA----TGAAAGGCATTTGGTACAACTGGTT
s HiC_scaffold_1 132815351 910 + 233722169 AGGGCTGA----CTGATGGCCCTCGACTTTGGGGCTCCAGCCCATTTCCTGGGG---GGCCCTTGTACTGCTCACTCTTCTGCGTTTCTCTGCCAGAGCGTTTCT--CTTGCTCTGATTTTCAGGGACCCAGCCAATGGGACTGGTCTCTTGCACATCCCTGGGAGGCTTGGTTCATTACATCCGTCAGAACCTCTTCC----TTCCTCAGCAGGAGACTTGTTAAAGC-TTAGTTCAAATGGcagccacctcccctccaggggAGCCTCAGCATGGCCTCCCTGCCTTGTCCTGGTTCCCTGGCCTTTCCTGGGCGGTACAGCCATCCCAGGTGGCCTCTCCA---------GGCAGGAGCATGTTTCTGCTCAGAGAAACCTGTGTGCCCTTGGGCTTTTCAAGGATTGCGTTCCCCTGCA---GTGGTTCGTTGAATGGGAAGATAATCGCTTTCAGTGCctatggaaaaagtaaaaaataacccAGAGTAAATAAAACCTGCGTTCACCCCCAATTCCGGAGGTTCTCTTGTTTTATGTGCATTGACTTTGATCACAGGG-CACTGTGGGGACCACGTGATTCGCATTAGAGACCTCAAGTAGAGTATTCTGTG---CAAAATCAAGAGAACTGGCTTGAGCTTTAGGAGTAAATAGTCCTGCTGTGGGCATCTGCTCAAAAAAGGATGGAAAGAGGTATATTTGTCTCTTTGGAAGAGCATTTTGCTCTCCAAATATCTGGATG-AAAGCCAGATTGTGCTTTCTTATTAAGTATCCAGAACACATTATTAATCAAATGTAGGAGACAGTGAGAGGCAGGATTAGCTCTGCAGAGATCAGCAGCATTTGAGGTGCAGAACGTTGAAAACTAAGGCTCCAAGGAAT---AATACCTTACTAATTTCAAATATCAGTGGAAGGCACTTAATACAGctgctt

a score=24811
s chr3           146337201 1674 + 160039680 AGTTCTATGGCTAGATTATTTTCAATTGTTTTTAAGCATGcacacatacatgtacacacacacacacacacacacacacacacCTAAAACACATCTTAAACTACAAAGAAGCTATCTAGCCCTAGAAACAGTCATCCGCTGAGTCTCTCACTC-----CCCAGCAGAAATCCTGGGGAACCTGAGATGTTCCCATGCCTCGGTATCTAGGAACGAATGGACGTCAGCGCAGTTGTGTTGCCTCCTGGGCGTCTTGGATCCCTTCACA-CTGAAAATGAGTGCCTTTCCAGAGGACACAGTGTGGCTGTACAAGG--CAGGGTCAGCTGGCTGATGG----------TGGGG---CAGAC--------------CTGAAGGGCTGTGATGACATTCTGACCCTGGTCCTAGCCCATCTACCCACATGCCTGTCATCTCCTCCCCT--CCCTCCCCCCCTTGCTAATAGACT-CAGTAGCCAGCAGGGAGGCTCACCCATCATTGCAGTCTTGGCAAGAAGCCTTTTGAGTGTCCAAAAACAGCttttaattaatttatttttttttaaaCAGAGAAACACAATCGTTTCAGTGAAAAGCTT-TCTACTAATTAAATAGGAAATGGGGCaatttattatttattattatttaGTGTTGGCGATTAAGTCCACTTAATCTATCTGCTGGCCAAGCCTGGTGCTCACACCCAGCACACTGAAAGAACAGTCAGGAGCTTGGAGCCCCTACGAGCACTGCCAGGAAGCTCTGCTCAGACTGCAGGGGAGGGAGTAGCAGCAGCCGTGTATTATTTATGTTCCCCTTTCAAAACAAACCCATCAAAGGAACAAAGCCTGTCTTCCGCTGGCTGCAGT-GCACCCCAGCATACGGCTGTCACTCCCGAC-CCCTCAGCTGCGGACTGGAGTGGCTGTCCAGGTTGTGTGAGGGGACTGCCTGCAGCCATCTGCTGAGTGTCAGCTATTT--------CTTTCTGAGCTGAATTCTAACTGTAGAACAGGCTGTggagggagagagggaggga--gagcagggagAGGC-------AGGCAGAGAAAATGTGGCTCTCCCGACTGTC--ACTGTTTCTTACATGTCAACTTTGAGCCTGTTCTCTGGGAGAAGTGTGAGAACGGGGAAATCTGGGATGAAGAG---------------AGGGGCAAGGAGCTGGGAAG--AAAGTGAAGTCCTGCATGTACATT--------CCTGGTCACTGGTGATTGTTTGACAGTGCTGCACCGCATGCACGCTGAGcacactctcacacacacacacacacacacacacacacacacacacacCAAATACACATGAAAACTGTGTCAATGAAGGCACCCTTGGGGTCGTATGAAAGGTGTGTTTTCAGGAGTAATTGGGATTGC-CAAGTGAATGCTT-ATTAAATGTGAC-------ACCCTCTTTTGCTTGGAAGTC--ATGAATGACAGATGTTTAGAATCTACTTGGGCCTTGTGGCATTAAGGTGGCCCTGGCTGTGGATTCAGCTTTGCCTCGTGCCTCTGTCATCTG------------TAGGAGGCACTCGTCAGCCTCACAGTATTGGACTAGAGGCTGTACCGCTCACTCGTGCATTCCTGTGTGAGCATGCA---CACACTCAGTTCCCGGAAGTAATTAAAAGTACTCGCAATGTAGAACGTATAAGGTCACGTGCTGTATGTTGTTGACACAAAATTGAATGGACCATGTCTAGGCACACTGATACCAGAAAGTG
s HiC_scaffold_1 132824839 1573 + 233722169 AGTTCTATAGACAGATTATTTTAGAACCTCTTTGT-------------CATGTGGGCACACACAAAGCGCCACA-ACGCGTTCCCCAAACATACTTTAGTCTATAAAGAC----TTTAACCCAAGAAGCAGTCATTCATCCAGCCACCCATCCGCTTATCCCCCGGAAATTCTTGGGAATT-----------CATGCC---GTGTCCAGCACTGGCAAGAC-TCTGCGCA------------------CATCTCGGGGCCCTTAGGGGCTGGGAATGCGTGACTG-CGGGAAGCCTGAGGATTACTGCGGGAGAAACCGGCTTGGCTGGCTGACGCAGAACACACCTGGGGACTCAGACGCTGGACGCTTTCCCTCAGGTGCAGGGAGGACTTCCTGGCCATGCTCC-AGCCC-TTTGCCTACA----------CTTCTACTCTGGCCTTCCCCTCCTTGGTGCAGCACCAcggtgg--ggtggggagg---aagcATCGCTCCAGG---GGACTGCAGCGTT----GTGTGAAAACAAAGATGCTAATTGCT------------------------ATGATTGTTTCAGAGGAAAGCTCATTGGAGGACTACATAGGAGGAAAGCCA---------TGGGCCTTATTTACTCCTGGCAATTCACCAGGCTTAATCCA-CTGGGGGTCAGGACCAACCCTGAAACCAACCCCACTCTGGTAACAATTGGGGCACTCAAGGCCCCACAAGGACTGCCAGCAAGCTCTGCCCAGACTGCTGGGGAAGGAGTAGTGGG---TGTGTATTATTTATGGTCCCCATTCAAAACAAACCTATCAAAAGAACAAAGCCTCCTTTCTGCTGGCAGCAGTGGCAGCTCGACATATGG----CGCTGCGGGCTCTCTCTGCTG-----GGAAGTGGGCGTCCAGGCTGTGCGAAGGGGCTGCCTACAGCCATCTGCTGAGTGccagtttttttccatttccactcTGAGCTGAATTCTAATTGTGGAACAGGCCACAGAAGGGAAGGGGGAGTGGCTGGGCCTCAAGATATAATTTTAAGAAGGGGGAAATGTGTCTATCCAGGTGGCCCAAGTGCATTTTCAGGGAAAAgtgtgcctctgtgtgtatgAAAAAGAGGGTGAAGGGTTGGGTGTGGGGTGTAGAAGCGGAAGGAGGATGCAGGACAGAGGAGCTGAGGTGCAGAAGTGAAG--CTATGTGTAGGGTCCAGACACCCTTATCTCTGATCATATTTTGATATCTC--------------------CAGCCTCTTTCA-----------------------------------CAAATGCTTATGAAAACAATCCCTGGGCAAGCACCCATGGTGGGG---GAAAACTATGTTTTCAAGAGCAATTTGGGTTACAAAAATGAATGTTCAATAAAATGTGCCAGAACTAATACTTTGTAGTTTAGGGGTCTTAGAAATGAAAGACACAGAGAATTGGCATGGGGCTTGTGgcatt-agttgggtctttttgtGTGGTAAATGTTGCTTTGCATTCTTGTGATCTGACACAAGAAGTATAAGAGGT--------GTCACAGAGCACTAAACtgg--------------------gaatgtgtgtgtgtctattaATTGCACATGCAAATCCttgaagcaattaaaaa-aaaaacactgtgtgATGTTTAATGTCACATACCTCACGCTATTGTCCACAGAATGACTGGCccattttaaaatgcacaaacACAGAGAGAtg

a score=75418
s chr3           146339900 3015 + 160039680 CTCTGTTTGTTTCTTCTCATGGGGACTCTGGGGTCACAGGGACATCACTGAAACTGTAAACACAC--TTCTGACTGTGA-AAACCCAGCTGTTTCTTCTTGGACCCAGCATGCCATTAGCCTAAAGCCT----------CTTAATTTCTCAGCAAAGGTAGACCAGATGGCAATGGTATTTCTCTAAGAA-----------TTTCTCCCACACATATAAACAGACAGCAAAAACAAGAGGAATATATATTCAAATacacacacacacacacacacacacacacacacacacacacacacaTGAACACTTTGATTTTCCTACTGttattttattttattttactttattttattttTTGAGTAAAATGTACCTAATGGCCCCTGAGCTTTGCACTCACTGATAAGAAACCACAGACCCTGCCTCGTCCATATCTCCCTGTGCG--CCATGTGAAAACAGTCTAGAGCCC-CAGGATCTTATTATGGGACACCTTGGGAATGTCCTAGTGATGAGGATATAAGTCAAATATGCCCTGTTCCTGTGCTCTGTTTGGTAAAGATCATAGAGTCATCTTTCTCCCCTCTAGTGGGCGAAGTCTGAATATATAAA-------CCAGAAACCAGGAAG-GAAGGAAGAAAATGACC------TATCTCCAAATG---TTCACCCGACACTGAGTC--CGGGTTCATTTCCAGAGGCAGCCAGT--CTCATTAGGAA-CCATGTTTTCTGGCCGCTGTGAGGCAGTTTCCACAGGGACTCATTTTGGTAAGGGCCTCATGGGAAGAACCAGGTTTGCT-------------CCTTGGAGTTGGGAAACACAGcagcagtcaggaaacttcctctgc-tgaggccaggacattttcggctt-------tacaggttgagtcagaactgagccagtgaacgactttatttttttctcattcggcaatttacatttagaaaggaaaaagggttattagctctcaagctgtatgaaatatgagactggatttcagcctgcaggcAGACTTTCgaagtctctgcacagcgtccccgtagacagccattagggctttgcttaaaaacctgaagtggtcagaagctgtc----tttcaaagtcaccagctccatctaagcgcaccttaaattgctagaaagtactttt--atgttggcttggaatttgcctacttCATCTTACTACCAAGGCATT-CTTTAAGTGCTGATTAAACTTCTAGAAATGTCTGTTGGTGGAAACAGTTTTCTATGACCTGTCTCCCTGCCCactggtcatatagtaaacttttctcgatgtgaaagagccattatgaaaataatgtattgtatcctgctgcagtgcagagaaacctctgagagccgctggggtttgtagaaccatttgccttcttcctaaatgttcccagactgcaacgccccatgaactcttgcttcttttctcagtttctctgcctgatcccttattataaggatgccatccgtgtct-ttctcgctgttgtctgcgtgcctactgaaacagttcgcctccctttcctaattaaatgcctctcatcttccccggactttaaaccagctcactaTGAGAGcacacacacacacacacacacacacatacacacacacacacacacacCCGGGGCCTGGAACTTGTGGTGTTTGAATTGAGCAGTTtcattagtaaagtatttaagctgcttggactctctctctctctctctctctctctctctctctctctctctctctctccttccctccctccctctctccctcctgtctcccacttcttttgttgctagctcattctctctatttctccctctctgtatttctatatctTAGTTCTTAGGAAAGTTTTGGAGTA--GGTGTGAGAAGCCATCCCTTACCATTTGTGGGTTTGTTGTTTTTA--TTCCCTGCCAAGGCCCTCCACTCTGTCTTTCAACATTAC---ATGGCTTTGGGTGCCAGTCCCGTGATTCACATACATGAGGAATTTGGGAGA--------------CTGGAATGAAAGGCTTGAGGGTAAAGCTAGATG-ATTTGCTCCAGCATATTTCAATTACCAGTGGAAGTTTTGTATGTGTTTCTTTAATTAACACTAACTAAGATTAGGACTATTAAATAATATGGTTTCGAAACGAAAAGAAATCAACCCTTAGGGATACTATTTGATATAAATAAAGACAGGCAATTTCCAGTATGCTGTTTTCACATAATCCACTCAACCTTGACTCTCATCCAGCACAGATCTTGGGGACTTATGCAAATGTGAACAGGCTGCACCATGCCTGCTGCCTGAGTGAGTTCAGGAGCTGGAGGGTTGCTGTGTCAAA-TGGTCTCTGTTTGTAGTTCTGGATGCTGCGAGGTAATAGTGAGCTTTAGTTAATTACACCTCGCATCACCCCCAGGAGGTAGGTAATGATTATAGGCGGACTTGGCTGAAGGAACTCAGAATGTCTTAATAATCACTTAATAGAATCTTATCATGAGAAGCAAATTGCATTAAATGGGCGAATGAAGTTGACTGTGAGAAACGAAGCCAGGAAATAAAATGCTATGGGGGGTTTTATATGGGGAAAATCCAATTAACACCCT-TTTAAAAGAGTTGGCCTCATGGCTTTTCCATATCCCGCACTGTGTCTAGCAGAGGGCTACACCCCAAATAAAGACCTCTCTCAT---TATGAAGGGACTTGTAGGTAAAAATGAAGAATGTGAAGGA-------AATGCTGGATAGGGGAAG--AGGGAAGAAGATCTACAAGTCATTGGACCTTAAAATTCCACTTGGAAACAAAGAACAATGTAACTTCATCATGAAGCCATTTGCACCCTCTTTGCAATGAAACACTGCTTTCTCATTTGATTCTTAAGGCAAAGAGCTATCTTGAGTTAAAAAAAAAAAAAAAAC-ACAAGACATACACTGTGTGTGTTTG----------ACTGTGTCTATC-----TGGGAAATCCTAGTACTAAAAGAGCCAAGCCTGGGTGATAAAACAGCAAAGTGGCAACTAGATTGGTG--GAAAAAGCTCAGGTGAGCACATGGCCCACAGAGGTGCAAGCCAGAGAGAGGTGATACAATGTGTC
s HiC_scaffold_1 132826729 2739 + 233722169 CTCTATGTCGTTTCTCTTCCAGAGAC-CTAGGATCACACGGGCTTCACTAAAATCCCCAGCTCATAGGTGTGACAGTCACAAAGCTGGGCACTTTCTTCTGTCCCCGGCACCCCTGGAAACCAGAGCCTATCAAGAGCTCCTAACCCTTCAGCAAAGTTATA---------GAtggaatttttcaaagaaaatatttgtcttttcccccagacttagaaaaaaatagaaaaa------------------caaat-----------------------------------tagaGAAATTTGAACTCTT--GTTTTCCTCCAGATATTTC----------------TTTTATA----GGGTAAAA--------ATGGTCTCCGGCCCTTGCCTCCACCATCAAGAGCCTGTGGCTCTTATTTGTACCAC-TTTTCCTGTTCGGTCCCTCCGCCAACA-TCCAGAGCTTGCACGGTCATAT-ATGAGAGCCCTGAGAAAGATCCT------------------------------GTCCCTGTTGTTTGTCCAGTAAAGGTCCCAG-----------------CCAATGAGTGAAACCTACAAGTGTAAAATTTAGTCTGTAagcagggaagagaaggaagaaattcaCTAATGGATGTCTCTCCATGAACCCCTCCCAACACTGTATCACTGAACTCCCTCTTCTAGGCTATCTGTGTCTCCCTAAAAGGCCACCTGCTCTG-CCACTGTAAAGCAGTTTTGATAG--ACTGATTTTGATTAAGACCTCAGGGGAA-AATAAAGTGTGCTTCAGATCCTAGAACCTCAGAGTTG--------AGCCAGGGTCAGCAAACTTCTTCTGCATAGAACCAGGTGGGTGTCAGTTTATGCTTTTGCCTGTCAAGGCAAAATTGTGCAactgaaacacttttttttttttgtat------------------------------------agctCTCAGGCTATACAAAATTTAGGGTTTGATTCAACCC--CTAGTGGGCATCTGAAGCCCCTCTATAGGATCTGCACAAGTGGCTGA-------------AATATTCCTAAGCCACAGGAAACTGACCCCTTCTTTAAGTCACCAA-TCCATTTAAAGTCCACTTCAATTGCCAGAAGACACTTCTTAGCATTAACTGGAAATATGCCTACTTCATCTTATTACCAAAGAATTGCTTTAAAAGGGGAtttaatttctagaaatgtattttGGTGGACATCATCCTCTCTTACCTATTCCCCTGCCTGGGAGCCATGTGGTAAACTCTCCTGAGTGTGA--GCGCCATTC-----ACAAACGATTGTACCGCGCTACAGTGCAGAGTAACCCC--AGGGCTACTGGG-TTTATAGAGCTATTTGCCTTCT-CCTAAATGTCCTCGCGCTGAAATGCTCTGTGGATTTTCGTTTCTCTAGTTGATTTTTCTTCCTGATC--TTTTTATGGGCATGTTATCCATGTCCCTTCTCACTGTGGTCTGTGTGCCTGCAGAAACCGCTGAACTCCCTCTTCTAATTAAATGCTTCTAATCTTCCCAGGATTTGAAACTAGCTCACCGATAAAGAACAGACCC--------------------------------------CAGGGGCCCAGGACCTTTGGT--TTGAAAGTAGTACTTTTAtcagtgaaatatttaaactaCTGGGAAGAGACCCCCC----------------------------------------------------------------------------------------------------------CCCACTCTGTTCTCCTAGAT-----------------TTTTGGGGTTATGTTCTCAAAAGTCATTC-TTACCATTTGTGTATGTGCTGGTTTTAAGTTCCTTG---AGGGAAGTGGCTTACTTTTTCAATGGTGCCATATAGCCTGAGTTCCTAGGCCAGTGCTTCATGTACAACAGGAATTGAATAGATGCTTCGGACGAATCAAGAATGACAAGCTTGGGAGTCGTGCTAGATTTAAGTACTTcagcatatttacatttt-------agctttttttgtgttcattttattaaCACT--CTAA--TTAGGACTATTAAATAATATGGTTTTGAAAC--ATAGAAATCAACCTTGAGGGATATAATTGGATACAAATAAAGACAGACAATTTCCAGTATGCTACTTACACATATTCCACCCAACCTGGTCTCTCATCAAATGTGAATTCATGGGATTTATGGAAACGTGCACAGGCTGAACTAGGCCCACTGCTTGATTAAATTCAG-CGCTCAGAGGTTGCTGTGGGGAAGTGGGCTCTGTTTGCAGTTCCGGATGCCAGGAGGTAATCGTGAGCTTTAACTAATTACACCTCGCATCACCCCCAGGAGGTAGGTAACGACTGCAGACTTACTTGGCTGAAGTTACTCAGAATGTCTTAATAATCACTTAATAGGATCTTATCAAGAGAAGCAAATTGCATTAAATGGGCAAATGAAGTTGACTGTGAGGAGCAGAGCCAGGAAATAAAATGCTATGGGGGGTTTTATATGGGAAAAATCCAATTAACACCTTCCTTAAAAGAGTTGGCCCCATGGCTTTT-CATATCCTTCACAGTGCCTGTCGCAGGGCTGTGCCTGGAATAAATGCTTTCTTCATCAATGTGGAAAAA-TCATAGATAAAAATGAAGGATGTGAAGGATGTGAAGGATGCGGGAGAGGGGAAGGCAGGGAGAACGTTCCAGAAGCCATGGAGCATTTCAATTCCATTTAGAAGCAAAGAGCAACACGATTTCACTGCGAGGCTGTTCTGACATGGTGTACAACAA---GTGTCcctcttattttgctcttaaacAAAATGGCTGTTGTTATGTAATAAATACCAAATGCCAACTAGACAAACTGCATGTGTGCATGACTGATACGCACTGTATTTGCCCAAAGCGGAAATCCCTAGTGTT-AAAGAGCCAAGCCTGAGTGATAGGACCACAAGATAAAAGCAAGCTTGGTGTAGAGAGATCTCCGGTGGGTGCAGGGTCCAGGGACACACTAGAAAAGACGATGGGA-ATTATGTGTC

a score=21091
s chr3           146343721 3075 + 160039680 GCAAGGCAACAGAAAGGCTGAGGCAAAGTGCAAACTCT--------GATGTAGACGCCCCACATGGACCAACAAATGGGAGGGGAGTGTAGGGAGGCCAGGATCCAGTAGAGGGCAGATGTGAGTCAGATTCCAGAAACAGCACATC---TCTGTGGACCTAAGACTCAAACTCCAATTCAAGGTAACAGTATAAACTGCACTCTGAAGCGATCCTTAGGTTGAATCATA-----------CACACCTAATCATATGT--GGCTGAA-GTGCACCTCACTATGCATGTTTGTGTGCAC----------------------------------ACATACGTAATTATTCACCAAACTGCTCCAAGGCAAGCTCCTGACAGGTGAGTGTAAAACGAGAGAG----CTGCTTTCACAGTGTACATTCTGAGATGGGGTTTCTTTTCTACCAGACACGCGCTCTAATGA-AACAACCGTCACTTACTTGTTATTTTTAAAAAATAAAATCTGAAGTGGGTGGAGTAAAAAAAAATCATACCACTAGTAAAAGAGACATCAGGGCTTTGGGCCTTGCGGGAGGAA----GCTTCCA--------GAAGGCTGAGGCAGCCCACTTGACTGTATG-TGA------GAAGATGTAGACATCTG---GCTTC------------------CTCCCACTCTTTTTTCATTGGATCTCATATCTCTGTAAATCATCAGAAAGCTTTCTGTGGCTTTTTTTTCCCCAGTATTTCCACTATAACACTTCCACCTCTTACAGTGTCCT---ACATCACACAACATCAACAGTTGATTTCCCAGA-------------CCCAGAAGGACCCCTGGTCATTAGCA----------------GAGTGGTCTTTGACAATGTTCCTCCCAA--CAGCGGGGATGGGCAGCCTTCAGGGGATTCGTGCTAGACTCGTCCTAATTAAGTGCCGAATGCTCTGATT--CCTTTGCCCGTAGTTTCTTGTCCTCTGGGGTGAGTAATGATGGGACACAAGTGTGTGCAACAGGCAGTCGGGGGTCACAGTACTGGCACGCAATATGGTGGCAGCAGATCACTGGGTGGACAATGCCAGGAATGCAGGACTTGGCGAAAGCAGTTTCCAGG------CCTGAGTGGATT----------AGAACCTAACTGACTTCCAACTGCTTCTCGGGAACGCTTGGGTACAATGCAGTCACTCTTCCAGAATGTGTGCTCTCTCTCTGAGCAGCACAGCCTCCTGCTGGCTCCCTGGGCAATTTTGACTTTTTTCTTACACTTATTGATTTGCAGAGGTGTAAAAGCCAGACAATTGTGGGAGGCAGCCCTCTTCTACCACGAAGGCTCCAGGGCTGTGTATCTGCCTCACCAGTCCCAGCTGAGGAATTTGAACAATGTTATTTAACAACTTAAAAGGTGAAACAACGTAAATACAATAAATCGAAGGAAGGAAAGCTTTAAAAAAAAAAAGCAACTGCAGATGTAAGCAGGAATTTTTAAAGCATAGAAATCTGAAAATGTAAGAT----TTC---------------AAAATGGTTGCGGGGTTGTTACCATAGCAAC------GCCAGTCT---GAGCCACAGCATGTTTCCAAATGTCTTTCTCTGTGGGGAGATGTTCGAGGGCA----------------------GATTTCAAATTTTTTAATTAAGGAAAAGAATAAAGAATCAAGTTTAATGGGTTAAGAGCCATGCTAGAATGCCAATAACCCTCCCT--CCAAGGCCTGAGAAGTCTGGTGAGGAGCGCTTTC-TGGGACATGACAATTTCCCAGAACCGCAGCGTGGGGTCGCTGTGGTTCCACCGCT-------GCCTACGCCTCCGTCTGGCGCCTCAG----AGAAAGGGCTT---CCCTGCTCCTCCTTTGAGCCGCCCTAACAGTCCTGTCTTTAAACCGcatttatgactattctgtgccgagactg-tgaaaacctcttgggacagagtcacagtgaacagcagccggtgacgttcacagtctagaaagagagataagtaaataaatagaAACATTAAGCTTGTGGTTAGATGTGGATGAAAAGGGAAGGGTGCCATTAGTGATGGAGTCTGCGTTTATACAAGGTGCGGGAAGATCTTCATTATGAATTATTAGGCTGAGACCCGCGGCTGAGCCT--------AAGGGGTGGAGGGATTGAGCACCAGGCA-GAAAAGAAGGCTGTGCG----TGTCAGGGCTCATGGAGAAAAAG--AAACCTTAGGCTCTGGTCAGATCTCT-------TTATTTTTAGCTAGAGAGAAGCATGGGATGAGG----------GGTGGGGCTATTCAATTTGCACAGTTTGTGCTTCACACTACAGAACTGTTCCCCATTTCCTTTGTGAATTG-TTTATTATTTGTGGCTTTTGGTGTGTGTAAACATTTTGAAAAGCCTACTTAGTATTATAACAATTTAATACTTTTTAT---ATGGCTGCTGTCACAACACAGATTTAGGCCATGGAGTCTAGCAGCACAGCCACTGCGGGTGAAACAA--TTTAAAAGTTCGAGGGAAGCAAAGCATTTGGTGTTATGAGAG---------------CAGAGATTTGGGGA-GTAGCCTTCTTTGTGGCATTTCCAATTTCTGTTGTCATTACTCTTACATGGCTGCTGCACCAGCAGTCTCTCAGATCCGGAGGCAG-GGTAGCCTCACCCGTCTTAATAACATTGATTGGCACAGCAACACAGGAGAGTGTTGGATAAGTGAAAAGGGAATGGGAGAAGGAGGGGGGATGGCTGGCAGGTGGGTGGGGGTAGGGCTAGTTTgatggatggatgcttagatggatggagggagggagggattattgaatggataaatggatggatggatggatggacggatggatggatggttgtttgcatagagggagggatgggttgggatgatg--gaatgagggaatggttgaatggatggattggagggagggagggatggctggCTGAAGTGACA-----GGCAGAGAAGGTAAGGAGTGTGAA--AGTGCCAACTATGTGGCACAGAACACTGGTGACAGATCTTCATCATTCTTCCTTGTACATGTcaaatactgacgaagtacctgctgtgtgtgagtcacagtcacagtcacagacaggggcgtacaacagtgagtaaaaccgtattgccctcatgatgtttactgtcagtgatggaaacagataCGAACTGCAACTGATCCCAATTTTAGGAAGTATTATGTATATAAAATGAGGTGTGGATTTAGTGTCGTCAGGGTCGA
s HiC_scaffold_1 132829634 2839 + 233722169 gcagGGCAACAGAAAGGCATGGACAAAATCCAGACTGTACATCCAAGATGCTCAGATCCAACATGCAAGAAGCAA-GGATGTGATATTTAAGGAAATCGGCACTTACTGGAGATGGGAGG--AGTTAGACTGCAGGA-CAGAACAAGCAGTCAGTG--CCTGGGACACAAA-------TCAAAG---CAGCAAAAACTGCATTCTGGAACTAGCGAGACATTGCACCATAAAGTTGAACTGTAAACCGAATTGTATGTTTGGCCGTATATGTAT---actatgtgtgtacacatgcacctgcacacacacacacacacacacacacacacacacacacacacacgctcactgagcttctccaagagaa-ctaTGGA-------------AATTAGAGAGAATTCTGACCTTTTCATATAAGTTCTGACATGCAATTCTTTTTC---AAGGAACATACATTAGAGAGAACAGCTatcacata----ttatttttaaaaa--------taaaatggagggaGTTAAACAGGA-------AACAGTACAAGAGGCACTAAGGCTT-GGTCTTTGCTGGGAGAAATTGGCTCCCCTTTTATTTGAAGCCTGAGTTGTCCCCTCCAGCTATTTAATGATGCTTTGGAGATGCTGGGATCTGTTTGCTTCACCTGTAAAGACGTTTGCCTCCCCTTCCTCCTGGATTGTA-CTCGTTGCTCTCTAAGT-ATGAGAAGCCTTTCTGTGAGTGTTCTTTGCCT-GCATCCC-----TTTCATTTGCAACCATTTGCGCGCCCTGCCACAGGACACCACTAAATCAGCTCGTTTTCCTGAGTCTCACACCCTGCCCAGG-----CCCTGGCCATTACCATTTCTGCCAACGTGAGGCATGTTCTGCTGCTCTGTTCCCCTCACGCCAGTGAGATGGGGC--CCTCTCAGGGATGCACTTGAGAGTCCTTCTAATTAAGTGCGGAAATTTCCGTTTGGCGTTAGCCCCG---TTTTTGTCTC--AGGATGACTAATGAGAGAAAATCATCAGGAGCAACAGGCACTCAAGG-TCACTTTTCTGACACA-GAGGTCCTTCAAGCAA----------GGAGAAGGAAAGTCAGGCAGGCTTTTTCA----CATCTTCCAAGGCCAGTTCTGAGTCTGTCCACAGCCAAGACAACCTAA-TGGCTTCCCGAACCTTGTCACGGGTGCCCAGATGTGAATCACCGGCTCTTGCAGAA---GTGCTCTGTGTCTGACCC-CAAGGCCT---GCTGTCTCCCTGGGGAATTTTAAT-----------------------------------AAGC-----------------------------------------------------------------------------------------ATGGCATTTAACAAATTAGAAAGTGAAGCAAATTAAATACggtaaatcaaaacaa----agcttGTAAAAACAAA-------GTAGAAGCAAGCAG-CCCTTTCAAAGCACACAGAGCTGGAAATGCAAGGTAGAATTCTGATggttagttaaaaaaaaagagagaggaaggttGCCATGGCAACAGCAAAGTCGGTCTAATGAGCCACCACATGCTTCCAAATATTCTATTCTGTGAGATGATGTTGGAGGGCAGTTTGTCcggtttctgttttttgttttttgtttttttaatcaaagaGAAGGGTAAAGAAGCTAGCTTGCT------------------GAATGCCAG-GACCAgccctggagaaagcctgagatTTC-GGGAAAGAGCGCACACGTTGGTCATGA---------GGACTGGCCGCTTGGTGTCGCTGTTGTTCCGCGGCTGGTTCGCGCGTATCCCCTCGTCGGTTCCTTCCTTTCCAAGAGGTGcttgaaatttgaaatttctctGAGCCGTCCCA--------------AACCTTCATTTAC------------CCAAAAATACTTATAATATCT---AACATGGTTCC------CAG-ATCCCGTGACACCCCCCCCCCTCGGGGATAGACGCG----------------------TTGCGATTTGGTCAATGTGAGAAGGTCAGGCTGGTGCAGGTGGT-----------------------CAGCAGCACCTGTCTGACCAGGCATCAGGCTGAGACTCGAAGGGGAGTGTCGTCGGGGAAGAGGTGCAGGAACCGTGTGCCAGGCATGGGCACAGAGCTG-GCACCACTGCCACGACT----GAGAAGAGGCAAACCCTTTGCCCATGGTCAGG-CTCTGCAGATGCTATTCGTGGGTGAGGCGAAGCCTGTGAAGAGGTTAACAGGAAGATGAGATTATTCA----GCGTGGTTTGCTCTTCACACTATCGGA--ATTCCCATTTTGCTGTGGGAATGACTTTATCATCAATTGCCTCAG--ACAGCTACCCATTTTATAATGCACATTCCATATtgtaatagttttataatttttatccaaTTATTGTAGTCATAATACAACTACAGGATGTCACACCTAATAATA---TCTTTGCTGGTAGGATGAACGTCAGAAGTCTGAGAGAAGCAGTTGAACT-GTATGGTGAGAGAGGCCTGCACCATGACAGAGGTGGGGGAATGTAGATTGC--TGCCCCACCTCACACCTGTGCTCAGACT-TTCTTCCCTGACTTCTGCCTCACTGGTCTCTGGGATTCCGAGGCAGCGACAGCATTATCCATCTTAGCAAC---------CACAA-----------------AGATAGGTTTAA---GAACGG------------------------------------------------------TACATTCTTA-ATAAATA---------------TGTTGGATGGGAGAATGAATGGAGGAAGGGATGGTAGGATGAATGAATGG--GCAGGCAGAAAATAAGAGGTGTGAAAAGCCAGTGTTGGATGAGTGAGTCGTCTACAGAAT----------------------------TTTAGTGacacatttgtcaaaga------------taaatcACTTTCAAATTTCAGGGACAAAGCCA----GGCATTTCACTGGCCTTCTTGCGTGTATATT---AATATTGATGGAGCACCTGCTATGTGCAAGTCTAGGTAATAAATATGG---GAAACGAACCTGAGGGA-TACATCATCATGGTCCTCCTGCAATTCACAGTAAGTGATGGAAATAATCCAAAAGCACAGCTAATCCATTGTTCAAAAGTTGCTttgcatacaaa-----gtggagattaagaTCCTTTAGGGTTGA

a score=10962
s chr3           146352156 507 + 160039680 ATGTTAGACCTGCGTGTGAAGTATC-------CACTGG---ACAGATTTGGATGGGAGTGGGGGGTGGGGAACTGGGGAGGCCTGAAACAGCTTTTGCATGAATCTTGTAAACCTTCCAATGATGTCTCTGAGCATGAGTTGCAAAGCTGAAGGCATCAAAAGGATGACTAATCCATTGGAGCTTCCTCTTGGCGTAAGCCACTTTGTGCATTGTAATAATGCCCCAGTAATTGCAATGTGCC---------------TGCTGACACCTG------------CTGGAACCACAGGGAACTGCACTTCCCTTCTAGGCCCTCAATCCGCCTCTCTGGGGTAGGGTTT--CCTGTTTCT----AAAGGTCTCGGGAT---GTTGATAGTCCGGGCTGCATCCCTCTAATGGCTTAGTGGTGAAGCACAAACTTAGGTGTC-ACCTCTTG--CTGTCTCTCCCTTTA-TACCTAGCTTTTCATGGGTCCGAGGCTGGACTCTTTTGGAGGAAGCATTTTCTGCTCTGTAGT-TGTCCTCTTTGGGGTCAGCTAATATGACC
s HiC_scaffold_1 132836679 530 + 233722169 ATGTGGGACTTCTGGGTAAAGTATCAAGGAAGCAGTAAGATACAGATTTGGAGTTGAGGGGGGTCTGGGTAA-------GAACTCTAGCGGTTTTTCCATGAATCT-GAAAACTTTCAAGAGATGTCTTTGAACATGAGCTGCAAAACTGCAGGAATCAAAAGAACTACTAATTTATCAAAGCCTTTTTACTGCTTAAATCACTTTGTGTATTATACTAATGTACAAGTAATTACAATGTTCTATTTCAGTAATAATACCCTGACAATTGAAAGGTGTGTTTAAAGAACCATAAGGACCTAAACATTCATTTTAAGCCTTT-GCCGAGCTCACTGGTTTATGATTTTCCCAGTTTCCTGGAAGCGGGGCTGGGAGAAAGCTGATAGTCTGGG-------------GAGGGTTGGCA--GAAGCCCCAGTCCAGGTGTCTGCTTCCTGCTCTGTCACTTCATTCATTTCTTGGCTTGTTA---ACTCAAGACCCGCCCCTGCTCCAGAAAGCA-TTCCTGACCTGTAGTGCACCCTGTTTGGGGTCTGCTGACGAGATC

a score=8907
s chr3           146355395 461 + 160039680 AGGATCAGGTAATTGTGGCTACAAACACACGACCTGT-AAAAGGAAGAGGAGGG-------------GCCTC--------TAGTCCTTACACTTTTCTCCTTTCCCC-CTAGGGTTTCTGGTGAGAGAGGTCTCTCTC-CAGGCAGTGGTCAGTAGACTGTGGGAGTTCTGTTATCATTAG----GACTGAGCCAGTTCAACCCACTGCCTCTACTCCCTAAGGGCAACTTAAGCATCCACCTGGAGAATTGTAATGCGTGCCGTCATTTCCTGCAGTCGGGACAAACAACTGCTAGGAGACCAGCGTCATTTGGGATGTGAGGTTGGATTCCAGAAGGAACAAGAAGATATCTCCTTGTGACTCGGGCATGG---------CCCAAGGTGTCTCAAAGATGTCACCACATAAACAGT--CTCAAGGAG--GTTTAGTATGAAATGAGAGAAAAGACAAGATGCCACGCAAAGCACATCCGTGACCTAAGCATGTACCGTCA
s HiC_scaffold_1 132843002 490 + 233722169 AGGATAGTGTGACTGTGATTGTAAATGTACATCCTCCCGAGAGGAAGAGATGGAACAGTGCTTTACTGCCTCAGAAGAGCTCGACTTTacaccttccttctttccttgatGAGCCTCCTGGAAAAAGAGTTGTCTTTCTCAGACAGTTATAAATAGCAAATGGGAATACAGAGACAATTAGCGTAAAAAAAGACAATCTTCTTTATTGCTTTGACTCCCTGAGTGTGATTTAAGCACTAGCCTGGAGAATTACAATCAGTGCAGTCATTTCCCTTAGCCATGACGAGTAACTACTGTACGATCAACATTACTTGGGTTGTGCATTTGTAT----------GTGAAATACTTTTTCTTCATGGCTCATCCAAAGAAGTGAATTCCCAAGAGGATTAAATAATGTCATTCAAtcaataataatttaaagagctGTTTATTGTGAggtaaaacaaa--accacaaatcaCATAAAACATATGGATAATTTAGTGAAGTATCATCA

a score=14865
s chr3           146373334 749 + 160039680 attttttaat-cat--taaactttggttggctc-taatgcAATGACAGATCTGGGGAGGAGAGAGCCAATGTAACAGGCTCCGCAGTGGTTGAATT-GGCTATCTGAACACCCC--AACTCATGTTGTTCAAAGTGACTAATAAAAGAGAGACCAGGTGGTGCACTGTGG---TACACAGTGTGGGAAAGGGAAGGGA-----GCTACTACCAAATGGGTAACAAGAGAAAA---------------------TGGCCAGAATTTCACATTTTCAGCCAGAGAACTTGACTTCCTGTATCTCACCAAGCTTCAAGCAACATTATAAAAGCAGCAGTTAGCTGCATAGAGGTGATGTAGGGACTGGGGGTGATGAGGAT-AAACAGTGCAGGGCCATACCTGTCCCCTGGTCATTATGA--GCACATGCTGGTTATCCAATGTGTTTACAAGGTTCTGCAAAGATGTTCACAGTGCACATA-ACAGAAATCTAGGCTCCTGGTCCTTCTTTGGC----CCATTGCCTTTGACTAGAAAGAAGGAAGGCACACCACCT---CTTCAGC-----GAAACCTAGAAACAGTAGGAGAGAACTTCCAAATGATAATTTAAATCCAGGAGAACCA-TTCCATGCAAAACTCTAATTTC-TAATCAAAA------GCAAAGAAGAAACCTGAGGAAATCCACCTCACTC-CAAGGAAGGAATAGTCATCTGTTGAAAACAGAAGCCAG-CGTGGACGT-GGCATGGAACTAGTTGGAAAATTTAGAAAT--AAATTGATTTGTTGCAG-TTAACCATTGGAT
s HiC_scaffold_1 132855713 795 + 233722169 ATCTCTTAATTCATGGTGAACTTTGGAACATTCACAATG---TGACAGATACGGGGAGAAATG-GCCAGTGTAGCACCCTCAGCAATAAATCAGTTTGGCTAATTTAACATTCCTTAACCCATGCCATTCAAACTGACTAACGAAAAACAAGCCAGATGACACACTGTAGATTGCCAGAATTTGTGAAATGGAAAAAACTCTGATTTCTTTCA--TAGATGATAAGAGAGGAATGTAGTATTTGGCCTTCAGGTGGCCAGAA-----AAACTTCAGATACAGAATTTGACTTCCTATATATCATAAAGCCTAAAACACTATTTGGAAACTACCAATCAGCTACATTGAGAAGATTTAGGGACTGCACATGATGAAGACAAAACCAGGTAAAACCCTACCCATGAGCAGATTGGTAcaaatgtgaattttgtttttc--atcagtTTACAAAATT-TGGAAAGATGTCCATAGTGCATTTATGCAGAA--CCAGAATGTTAGGCCTTTTCGGGCGGTGCCCCtttctttcaaaagaaagaagaaagttataGAGTCTAAGCCTTTGCTAGTTGAAACCTGGGAACATAAAGGAGGAATTCCCATTTTATA----AAGTTTAATATGATCATTTTCATTAGAAGTTCATGTTTAGTAGTCACAAAATGTGGAGAAGATGAAACTGGAGGCAGATTGCTGCCCTTGTGGGGAAAGAATATTCAACTGCCAAAAATGGAAGCCAGCCATGGACCCAGGCATTGGGCCaatgggaaaaaatggaaagcaaaataaatctgttGCAATTTAATCCTTGGAT

a score=24160
s chr3           146374681 1008 + 160039680 tttcctctccactttcttcacaCATTCTTGCACAGGTTTGCATAGACAC---------------AATGTGATTTGAGTGAAAGACTGATGTGCGAAACCCATAA-TGCCATG-TGAGGTGCCCAC---AGCGCCATGATGAGGGCTGTCTCTCTGTTTCTCTTGGATTTCCAAAGTGCCCCATCTCCAGAAGGA-GCTCATTTGGGTATA---TCTGCTCATATTTCATTTGAAAATAGCATTGACCCATCAGCTGGTCTGTCAATAACAAAATTACTGCTGGCATTGGGGAGTA-AAAGAACCACCCAGCACCTCACAAAAGAGGGCTTT-CTATTTAGCCAGTGACCCGATTTGACTGGTTTCAAGCTCTGTAATTATCACCAGCTAAAGGAAATTTAGCTAATAGTTTCAATATCTCATA-TCTATTTGAAAAGAATACACAATGCACAGGGTGGGGAGGGTTAAT-TTTTTTCTAACCCAAGTAAA------------GAAAGTGGTTGGTTTGCTTTCTCAGTCTGCTAATGCAGGTGATCCCAAGGCCTGCAGTCTCCCGGCCTATT-AGACTACAGTTAGTTCTTTTTCTT---------------------------CAGGCTCAAAGAGATGTTTGTTTTGAGGTATTCATTGGACTCAGAGTGCAAGCCAGTGTGAGTGTGTGCAGGTTAGAAAGCAC------AGGGGGCGGGATGTTTGCTG---CAGAATTTCTTCCTCTGCTACTCTCCGGATTGAAGTTCAAATGATGCTTTTAAAATTCATTAGACCAGCTCTAACTCAGTGGCCTTTAACCTGGCCATTGGGCACAATGCTGCCCCATTACTGTGTTCTGTTCGCACAGTTACACACTGATAAAAGGCCTTTTCATTCTGAGCCCTGCCTGCTCAATCAAAAAGCAGGAATAAC---ATTTCCTTCCCCAGTCACACACCTCCCAGCTACACATTCC-------------ATCAATGCTCCCAACCACGGTGCTTAGTAATTTGATGGCTTGACAAAATGCATATCCATAGACTGATCAAATAGAACTAGGAAGAAAACCGCTACAAAGCCTGG
s HiC_scaffold_1 132856748 1051 + 233722169 tttcttttatgcttt---------ttattatgTAAGTATGCATAGGCATCATTTTTGTCCCAAAAATGTACTTTGAGTAGAAGCACAGTctataaaatagataaatttcaTACTGTGATTCCAATTTAAGCACGAGGCAAGGGCATTTCTTCttgtttcccttttgttttcaaaGTCCCCAGACTCCAGAAAGAAGCCTACCTGAATATCCACTTTGTTTGGACTTCATATGGAATTAGCTCTGACCCCTTAATTAttctacaaataataaaattatacatagaGGGGAGGAACAGAAAGAATAGCCCAGAAACTTCTATATGGGAACTTTTCTTTTTAGCCAATGGCCTCATTCAACTAGCTGTAAACCCCATAATTATCATTAATTAATCAAAATTTAG---GAAGTTTCAAT--CTTATACTCTGGTGCGAAAAAATAGACTATgtgtaaagagaaaaacaacactaGTTTTTTCATTTCCAGTGAACTAGAAATTTGGAAAAGTG--------------TGAGACTGTGAAATCAGGGGAACACATGACCTTTCATTTCCTGAGCTGTTTATATTACAATTAGTACTTATTCTCTTGGTCTTCAACTTGGATTAAGAGCTACAAGTTCAAAGAGATGTTTGTTTTG-TGTATCTCATGGACCCAAAGTATAAGCCAGTCTAAATGTG--CTGGTTATAAAGTGCCCTTGTAGTGGCAGTGTTTTCAGCTGTGACAGCATTGTTTTCAC--CAGATTTGAGGATTTGCGTTCaaatgatacttttaaaattcactaGACCAGTAATAACGCGGTGGCATTTAACCTGATACTCGAGCACAGCCCTCTCTCATCGCCACACTCTGTTCGCATAGTTACACACTAATAAAAggccttttcattctt-tctctgcctgttcaACTGAAAACCACTATTAATGGGGTTTTTTTC-----TTACACATCTCTTCATTACactttttctagtttttagtAACTAGTGTTTCTAGCCAGAGCATTTAGTGGTTTAATGGTTTTTC-AAATTCATATCCATACACTGATTAAAATGGATTGGGAA----------ACAAAGCCCGG

a score=39331
s chr3           146379471 2668 + 160039680 AGCtgtcttgtggattttttctctaaatacttgctttttcaagctaacatccaaataaggtacacgctctgtatttgtttgatgttttttttgtgtgtgtgtgtgtctcttattattctgtaggttttc-tttccttctttatctttctttccatgtattttattcactggaagatccagatctcgtgccctgtaggcttctgaacactgcagtcctg------ttgatctctatcacacca-ctaaccagctcttctgtctgctatggactcatgtacttcctgctaagttagtCTCGCTTTC---AAATCTTCCTCCATCCTTTCAGCTATATACACATCGATGACATTCCCAAGCCATGTCTGAGAGC-AAACAACTG------GAAGGTTTGCTGGGGGAAAGGGGGGGGGGGACAGTCATCTTTATTTCCAGTGACTGTG-AACTTTCACCTGTGAGACCCAACACTCACGGACTTCCCCGAAGGAGTGGCTGGCTTTCCCTTCCTTTCTGCA--------------GTCACTTATTCACAGATGGCTCACCATTTCCTCAGA--TCTTCCTCGACCAG---CAAACACTTACACACACAAAGCACTCCTATATCCTGC------TATCCTACCCTAGTGCTTCTATTGTCTTTTTGTTTAGCAGACAATGCCTGGTGCCCTGGGATT---GCTGAGCTA------TTCTTATTCACTACCAGACTAAGGTT-TTCCTCAGAGAACA-ACTTCCGTCTCATTAGACATATTGAATGGCTGACTTATTTCCAGACAGACTTCCATAGAAAAGCCAGACAGG--GGCTTTCCCCTGGGAGGAGGGAAGCCTACTACAGGGCAGCATTTGATATAATCACAGTTGGGAACTCATTCTGAAGACAAAGCCCATGGGAGAGAGGGTACCATGTCATAGTCAGAGCAGGGTGTTGCCACTTGAAAATCAGATAAGCTATCACG-GGCTAGTGTTACTGGAAGTCCCCGTGTGTGACTGCTGGAACATGCTGCCGTCATCTTAGCTTAGCCTTTGGGTGATAGTAGCATTAGCTTATGTCCTCTTATCTGACCAACATCTTGTCATTCCTAATACTTTTAAAACTTGTCCAAACCCTGTTATGTAAGGAATAATATtgtcttagtcagagtttctatttctgcacaaacaacatgaccaagaggcaagttggggaggaaagggtttattcagcttacacttccatactgctgttcatcaccaaggaagtcagcactggaactcaagcaggttagaaagcaggagctgatgcagaagccatggagggatgctctttactggcttgcttccctcggcttgctcagcctactctcttatagaaccaagactaccagcccagagatggcaccacccacaaggggcctccccccgcccccatcactaattgagaaaatgccttacagctggatctcatggatgcatttcccaaaatgaagctcctt-----tctctgtgataactccagcctgtgtcaagttgacacaaaactagccagtacaAATATATTTAAGAATATGTGTGTATGTGTGTGCTACTTAGTTAACTACATTCTTAGACTGGCTTTGCTATAAATATTTCTCAGTTGCATACAACTTCAGATCTAGCCTATCATTTTGAAGAGTACAGTTATTTTTATTGCACT-GAGTTTCAGTTTCTAACAAGTGAATTTGCCAGCAGACTAGGGCTTGGAGAAATGAACACTCTGATTTACATTATTGGAGAAAGCGCATTATGTGTTGGAATGTCGGCTTGTG-GGGGGAATATTGACAGACTCAGAAGCAGAAACTGACAAACATGATGAGATGCATTATCCTGACAGGG------------CGTTCCTCAGGCAGAG--CCCTGGGAAAGATGGCATTTG-TACTCAGCAGACAACAC-CAGGCTCCGATGCCTTTGGGTTGGAGGGGGACAGAAAGCAGGTGAGGCTGGAGGGGAG---------------GCCTAGAGCCTAC------TTATTTTTGTGGTCTTGGCAGATGACAAAAGGAATTTCTCATTTAACTGTATG---------TGTGATGTCAtattataatcatccttcac--agacacaaatgaggtcaagagagattaggagtcttgctccagagagaacagccaataactgctgtaataggatttgagaataggtgttcGGACACCATCTGCAAGTGTG----TCTCGCCCACCCCCTCTCCACTCTATCTGCCTGTCCCACAATGTGCACTTCTGCAGAGCTCCAAGCTGCCTCTTCTGGAGACTTAAGGACAAGACATGG--CTGTTC------TTCTCCTGAATGTGTTGCACGGTAGCTATCCCGT------------CTACAGAGCATCCTTGAGCAAACTGCTTCTCCTCTCCGGCTAGGCTCCGCTCTCCC---AATTCTTAAGGTTCCTTTTACGTCTTACTACTCTAACTCGTCTAGAAAACATAACTT--CAAAATGCAGCGTAAACCAACAGCTACCACAGCTTGAACACTGT---AAGCTGAACACTATGCT-GAGCCTCAT-TACAGCT-CTGTCTT------GCCCTGGAATCTTAGCTTTACTGTAGTGACTCTTCTGAAGCACAGAGAAGctccacagcgtccccggagttcaggctgccacccccttgtccctaacttg----aagcattagcttcctgcctggccttcttgctcccaatttatcagtaccacctccattgcccatatagcctttagagtggccttgagaaacatttacctcag
s HiC_scaffold_1 132860753 2456 + 233722169 aattgtcacatggatttttttttaa------tggttgttTAAGTCAAGATCTAAACAAAAGCCACACATTGCATTTGATAAATGTT------------ATATATAGCTCTT-TTATTCTGTTGGTTTTCCTTTCCTACTTTaatttcatt--cttgtgttttatttactGGAAAATCCAGATCATGTGTC-TGTAGATTTTT-----CTGCATTCCGGGAATGGCTGATCTTCAACACATCATCTGGCATGTTCTCCAGGACAAGATTAATTTCTATAGTTCCTGCTAA---CatctagcattttaaaaatctttctccaTCCTCTCACATATGTG-------------TCTCAGACCCTTGCCTAAAAACTAAACCAGTGCATTACAAAGGTCTGGTGTGGGAGAGGA----------AATCATCTGTATTTTCAATGACTCCACAGCTTTTCTCTGTGAAATCTAAATTTCTTGTGTTCTGTTGAA--------CATCTCCTCCGTCCATCCCACACCATTCTCTACCCAGACACTCACTTACAGATGACTCACCATGtctcaaaagtttttatttaaacagagATAAACATTAACATGCATGAGGCATTAATTTGTCTTGGCTTTTGTGTCCTACTCCTgtgtttctaatttctttt-gtttaccAGACAAAGTCTAGTGCCCTGGGACTCTCACTATGCTGCTTTGTTTCCCATTCACTGTGGAATCGAGGTTATCCCTCAGAGAATAGACTTCCATTTGGTTAGACGCATTGAATGGCTGATTTATTTCTATTCAGGTCTCCATAAAGAAGACAGACCAGCAGACTCTCCCCTGGGAGAAGGTGAACTTCGTGCTGGACAGCATTTGATATACTCACAGCTGAGAACTC---TTGAAAACAAGAGGGGTGGGGGAAGGGTCA------GGTATTCAGAGCAGGTAGTTG-TAGTTCAACATCAGATAAACCATCTCTCAGCCAGCATTGTTGT-GGCCTGTGTGTCTGAAGACTGAATGGTGCCATTATTATTTTAGTCTGAA----AGGTGCTATTGTTATTA--TAAT----TGTAGtctgg--gattttttgtttttcatttgactT--------------------------TATAGAATtagatttt---------aggttttatttttac-----tagtacatttGCGATGTATTGTGGAGAG--------TTGTTACGTGTACA-TCACACACC----TTCATT-----------------------------------------------------------------------CTTTTTAccaccctttccctttctctcccctctgcCTCCATTTCTTTGG------------------------------------------------------CCTTTTGATGATAGTAACACTGACTTATAATT-ACTCACTTGG-------CCTCAAAACTGTCATCTTTAATGCTCTTTAGCACTTCTCCAAGCCCTAT-------------------------------TATGTAAG-----GCATATATAGAAGTGCTAGTTTGCTAAATACATCCTTAAGCTGAGTTCCCTATAAATATCTTCCAGTTACATATAGCTTTAAAT-----CCATCTTGCTGAAAA--acagttatttttattacatgaGAATTCTAGTTGATAATAAATGAATTTTCAAGTAGAAAAAATCTTGGAGAAATGAAAACCCAGGGCCGTATTACTGGAAAAagcacattttgtgtttgaatatCAACCTTTGAAAGGAAATATTGATATACTCAGAAGTAGAAACTAATAAACACTGTGGGGTTTATTATCTAGATGAGGACATCAGGAAACTGTCATTCAGGGAGAAACCCTTGTGAGAAGT----TTTGCTGCACCACTGAAAATAAGCATGTCCTCATGCCTTAAGGTTTTAAGGG----GAAAGTAGGCGATTTTGGAGAATAATATCTTATAACTGCTGTTTATTGCATGCtctacattatttttgt------------------------ttttcattttaacttcatGACAACCTTCTGGCATGTGATCCTATGACTATtttgtaaagagaaataaatagagtACAGGGAGATTAAGAGACTTGCTCTGAATCGCACAGCCAATAGCAGC-GTAATAGGATTTAAAACTGGGTCTTGTGATG-CACCTGCAAGCACAAGGCCTTTGCCAATATC--CTTCATGGTATCAACC--TCCCA----GGCCCTTCCCACTGAGCTCCAAGCTGCTTTTTCTGGTTACTT-AGAACAAGAAGCAGTtctgtttctaaaattctttcGGATGGGCTCCTTGATCACTACATCATACTATCCAATAACCACAGGAGGTCCCTGggtaaatttcttcttttccctg----ggcTTCATTTGTTCTTTAATCCTTTAGATTTCTGCCACTTCTTAAGTGTTCTTTTCAT-TAGAAggtaaattttaataaagtatacCG-AAAATAATAGCTATCATTTATTGAGCACTATTAGAAATCAACTACTATCCTAGTATTTCATGCACAATTGCTAACTTAATAGAGCCCAGCAATATTTATTT---GGTGGTAAATCTTCACAGTCGCAGAGAAGCTAAGCAGCTCTCCCAAAGTCC-GCATGCCCTCATCTTCTCTCT--CTTGAACCAAACAACAGCCTCTTAACTTATTATTGTGCTTTCACTATAAAAACACTA-TTGTAATCTTCATACAACATTCAGAAGAGTTCTGTTAAAAATTtacatcag

a score=7878
s chr3           146383139 371 + 160039680 GGTTTTGGAG-AAGATCCGATCGGAAGGAGCAAAGTGCTCAGCTAGACTGAGGTCGGTCTTCTCCTAAATGCTTCTCCTAGAGCTTGTAAGATGGACCTGTTGTTAGAC----GCTTCTCCCTCTGCAGACCGTCGCCCATGGAACCTCGTCAGATTTGGAAATGAAGGACAATA-----TTGAGAGAAAA----------TGACCCACCCTTTCCTTCAAATTTTGTCGGTTGCCACAGAAGATGTCCAAAAATGGGAG--------------TGAAGATCTTTGTTGATGGC-------ATCACCTGTGCCATCTTTACGGAGTTTAGAACTTCTTTACTCTTTGTGCAGCAAG-AGAATACTTACAGCCTATTATTGCAATGGGAAAACTCAAATGTCCtgtcttagttt
s HiC_scaffold_1 132864190 393 + 233722169 GGTTTTGGAGGAAGACAAgctcagaaaaagtaaaatgtgtaCACACACTTGGATCAGTCTACTTGTAAACACTG------------ATAAGATGGGGCCATTGCTAAGCCATTGCTCCTCACTCTGCACACTGTTTCTTCTGGAACTTTGTCAGATTTGGAAATGAAGAAGAACAACACCTTGAGAGAAACAATCTCCTCTTAACTTTCTCCTCACTGTTGGCCTGGTATGTCACCACCAAAGGCTTCCAGGAGCAGAAGAAAATGATTCATTTCAAAGGTCTTTGCTGACCACAACACTGAACACCTTCACCATGTATA-----TATAGGATTCATTTACTATATgtataataaattaaatatttat-gtgaaGTTTTGTAATGAGGAAACCTGAATTTCC--CCTTAgttt

a score=11886
s chr3           146386746 517 + 160039680 TAAGGACAATCAGAAGGCTGTCA---GCGGGCGTGGGAAGAGGAG----------ATGGACAGTCGGACAGTGGGAAGAAA-TGCTGTCTTCTGTCTGCTCCTGT-ACTCAAGGTAGACTTTCGGGCCTGAGGACTTTAAATAAGGAAGATAAATTTGAAGATTTCAGGGAGGGGAGATCCCTAGATAACCCCACCTTAACAGCAGCCCACCCCACTCAGAGTGGGAGCCATCCCCCGAATCAGAGTGGGAGCCATCTGGTCTGGATTTGTCTGTTGTATCCATGCTGCTTACAGTTCTAGCTTCAAGCCCTTTGCCTGTGAAGGCAGCTTAGCTGCATTTAAATGAGCTGAAGTCTAAAAACACCCGGATTATAAACAGCTCATCATGTGTCAGGAATGCAAGCAGTGGTTCCAAAGATGATGGCCTCCC-AAGACCT-CAGCAGAGTTCCTGG--TCCCTTCTGTTTTAT-------------TCATTTTGCTTTGTTGTTCAATATAATGGAAAAATTAATATATTTGATTATCAACAATGACCCT
s HiC_scaffold_1 132867969 499 + 233722169 TAAGGAAAATCAGAGTGCTGTCACCagagggcggggggggggggggggagccctAATAGATGCTGGGA--ATGCAAAGAAACTTAGGTTCTCTGCCTTTCCCAGTTGATCATGGTGAAGTTTCAGGCATCAGTCTTTTGAATAAG----ACAGTTTTGAAGGGTTT------TTTAAATCCATAGATAACACCATGTTAATGCCAGCCTACT-------------------TCCTTTGCATTAAAG----AGCCATCTGGTCTGGATTTGACTATTCTCCCCATGTTGTTTGTAGCTCTGTCTTAAAGCTTTTTACTCATCAAGTCAGGAT-GCGGCATTTAAATCTACTGAATTGTGAAAATGTTCCTATTATAAATAGTGCATCATGCTTTAGAAATGCAAGTGGCCACTC----------AGCCTCTCAAAGACCTCCAGCAGagtttgtgggatttcttttttttcattttgcttgctTGCtcgctttattttgtttcttcagatagttgaaag---aaaagattt-attatcAGCCATTAATCT

a score=8531
s chr3           146390998 568 + 160039680 aaaaagaacagtgtggggagtggggatttctttctgatgacggg-gagataagaatgtgagtgggagatttggatcagagaagcctggacattctttggtcacagaaataaatattga--------cagggtcatctggtggtcaCTTAAAGCAAG---GAATATTCATTCA-GATTATTCTTAGAACTTGAGTCAGGCAAACCTGAGATAAGGAGAGAGCAGGAACCAAATTTCTGAGAATCCAGCTGAGTCAGGATGCTAG--AGTCTTCCTCGGTGAC---------TCCAGCCGCCCCTTCC-CTTGACCGATGCTGTTCCCCCTTTATTGCGGTCCTCAGGGC--TTCCCTG--TTATTACTGTTGTCTCCTGGC---CTCTTGCAAGGCTTATCCATCTTTGGCTAATTCTCCCCATGTCT---CCAGGGTTTTCTTTGTAGATTGTTAATTTAAACATGTTCCCCTATTGCTCAACTCCGTATATGGCTTTTGCAGGGCGTCAAGTCACAGCACTGTAGTTAATAAAATGGCTTCACATCCAGGTCTTCTGCTAAATGAGTGTATCATGTTTGCTTTTGCCACACAGAGGGGAAGA
s HiC_scaffold_1 132877098 581 + 233722169 aaaaaaaggagtgCCATTAAAAGGGATTT--TTCTGATGAAGGGAGATATGGATATATAATTGATGAAATTTGATCTG-GATGCATGaat---------tcactgaaataaatatttaagacaaCATAGAATAACCTTGTGCCTACTGAAATTCAGTGGGGATAGTTACTCTTGATTATTCTTGGAATTTGAGCCAGGCAATTATTAGGTAAGGAAAAAACAGGAATAGAACTCATTGGAATCTGTTTCAAT---AATGCTATCCATCCTTCCTGCTTAACAAGTTAAGTCACATTTGCTTCTCCCACCACATTGATTCTGGT-----TTGATTTAGGTCCTCACAATTATTGCCTGGATTATTATAACTGTCTCCCAACTCTTTCTCACTGATCATGACTCACTTCAATTCATTCT--CCATATTTGGAACCAAATGTTCTTTGTAAATCAACAATGGAGTCAGGTGTCCCTCTGATCTAAATCCACTGATACCTTTCCCAACACTTCAAAGGTGAGGGCTGTAGTTAATAATGATGTCTTGTGTTCGTGATTTTTGTTAAATGAGTGTAATGTTGCTGCTCTTAtaagagggagaagaaaa

a score=14703
s chr3           146399214 588 + 160039680 TAAGACTTAATTTTGCCTACCCTGCTGTCCTTAAAAAGTTAGACCTGGCCATAACCCAGAAGTAATGGAAGCAGGACCATTAGG-AGAAGTGACTCAGCCCATAGTCTCATC-------ACGCACAGGCCCTGACAGGAAATCTTCTTCAGTGGATCCAGAAAGCATCGCTTACTGAGCAACCCAGATGGTATGTATGTATGCACGGCAGCAGAGAGCTTGGAAGAATTGGCCCGCTATTCTGGAGCTCTGAATCTGCATGCCAGAGGCAGCCATGT-GCCTGGGTGTCCGCCTGGGTGTTGGAGATAC-TGTTTCTAAGG------AATGGATTGAATTGGGAGTGGTTCAGAGGCTCTTTCAGTGGAATTAAGGTGTTTTAAAGATCATAGTAATACCTACCTCTAAATATTCTTGTCTAATAGAAGTCAATAAACTGTGGCGTGAGTG-TTTCTCCTCCTGCCTGCCTCCTGCCTCCTCACAACAGTTCAGTTAG---------AGTT----AAAGCAGCCATGaggagctgaggccaccgagatgaactggac-----cagcccctgccctgctg----ttctgctccagtgggagaagaca-gaccgcaagcaaggaaacaaa
s HiC_scaffold_1 132884556 608 + 233722169 TAAGACTTA-CTTTATCAACCCCACTATCCT-GCAAAGACAGCCCTGGCCGGAACACAAAAGTAATGAAAGGAAGACCAATAAGCACAGATGACTCAGCTCACATTCTCATCTGATGTAGGACACAGGCCCTAACAAGAAAAGTACTTCACTAGGTCCAGAAATCACTGCTATTGAAATTATCTAGATGGTATGTAT--------TACAGCAGAAAGCTCTTATGAGTGTGCTCATTATTAGCCAGACTTGAATATGCATGCTAGTTAAAACTGTGTGGCCCAAATGCTTGCTGGGTTATCTGAAACACTTGCATTTGAGGAAGCTAAATGAATAGGATATAGAGTAA-TCAGAAGCTACTTTcgcaaaattaaagtattttcaa-ATCATAG---TATATACTTTCATAAATTCATATATAGCAGAAGTTAG-AAGATGGAAAGCAAATGCTCTTTTCTCCTACCTCTCTCCGAA--ACTCACAAT-GAACAGTTAGTTGCTTAACAGTCCTCAAGTGCAGGCATGAGGAGCTG-GGCTTTGGAAGTGAACATGACCAATGCAGTCTTTGCCTTTATGGGATCTGTATTTTAGTGGCAGAAGACAGGACTACaagtaaggaaacaaa

a score=12863
s chr3           146403482 1312 + 160039680 AAGGGAACTTTCAGAACACCCCCTCGGATGCAGAGGGAGCAACCTCACCCCACTAATGGTCTAACTTCGAGAGTAAGACAGTCATTGGCAGTAATT----TCTCACTGGCACTGTGCTCC------AAAGCGCCTTTGTAA----TGATGTA-TCCTTGCTACCTGTATTTAGCATCCAATCTCC--TTCAAATCCA---------------------------------------------TTGTTCATTTCTGCACTCTGATCTTCTACCTAGCACTGTGGGCATGTG----TAGTCCTTGTTCCTCTCTGTCTTGTTCTTCTGTGGCAGTGGTGTATTTCTTGTGTTC-CTTTTACGATGTTTTGTTCTCACAGGAGCCACTT---AACCCCAAACCTCTTTTTTTTTTTCCTCTTGAGTAAACAGC------TTGC---TAGAACCC----CACCACCCTACCCTTTACTAAGGTTTCTCCATTTTCCTTTCCCAGGGGAACTTTAGGTGAAAATAG----------TAGGGAGAGGCAAGT--GGATTTGGCCAATTGCCACTGTCCTACATTTTCTTGGCACTCATG-----GAGAGGGCCTAGGGAGTTTTT-CATCAAGGTCTAGTTCACAAGTACCTTTTCTTAGTTTCCCTTTCCAGCTGTCTCCTCCCTAGGTCCCTTCCTTTGCCTTAGTTTGTTTTATTCACTACTTGAGCTTCTCTCATAACGCCCAGGCTAGCCTCAAGCTGCCAATGACCTTGTACTTCAATTCTGCCGGATCACAGACCCTCACATGCGTTCTGTGCAGTCCTGAGGAATGAACTCGGGGTTTCACGCGCACTACCCTGGCCCTGGTTTTACACGGATTTCTGTGCATTGGCGCATTGATTCCAGAGGCCACTACCTTCCTTCTCC-AGGGCCTGACCTAATTCTGGAATGCCCCGGTGTCT---------CTCCG--------TTCTGGGGAGCGCACCTGGTTCTCC--AGAGAGCATTGGGGTTCAGGGGT-------GGCCTCAGAGGCCCGGCTCTAAAGCGGCTAGGACCCTCCTCTTGTCCCCGTGGAG-------AGCTGGGGGCGGGGAGCAGCG-----------------GCCGGGTGACCCCG--GGTGTAACAGGTGCGGTAGCCGCAGCTGCGCGGG-------------------GGAGAGCGGCTTGGCGTCTGCTGGGGGTTGTCGGAGGCTAG---------------------TCCTCGCTGGACCAATGCGGGCCGCGGTTGTTCGTCGCCTGGCAACCGGCGGAGCCAATGG---------------GCGGCGCCAGCGCGGGGCGGGGTGGGA---TGGGCGCCCGCCGAGGAAAGCGGCG-----AGAGGCGGGCCG--GGCGGACCGGGCG---GGCTGGAGGCTGCGCGGAGCCGCTGCGTGCCGCCGCGGGTGCGGGCCCGC-GGGCTGCGGGAG--GCGTGA------------------------GCCGCTCCCGGAGCCGTGACGGTGAGCGGCG
s HiC_scaffold_1 132885526 1343 + 233722169 AAGAGGACTCTTACAA-ACCCTCTTGGGACCAAGGGAAACCACCCCTATCCCCAAGCAGTTG----TCTGGAGCGAGGTAATCCTTGGCAGTAACTGGCTTCTCCCTAG-ACCCAGCCCTGCACAAAAAGCTTCCTACCAAGCCCTGCTGTGGTTGTCATTACCTGTA----GCATCTTGTCTTCAACCTAGACCCAAGGCAAAGAGGAGGATTCCCTAGACTTTGAAGGGGTCAACGTGGCCCACTCCTTTTCTTACCTTAATCTTTCATCCAGGACTGGGGACACTTGCCTATAAACTGGGGCAAGCACTCCCTCTTTTCTCGGT--TTACAGTGTATTT-TTGTGTTCTCacctaca--tttttaatttca-aagagccTCCTTACAATGCCAaacct----gtttttctccttttgagtaataaatatttctttgtgtttataacCCAATTCACCTCCTGTCTCTTTTTCA----TCTTGCATCTTCCCTTCCCTTGGGAATTTTAGGCTCACATGGGCCGCCGATCTGGGGAAGGACTGGCCAGACCCTGGCAAGGCGCAGCACTCGTG-ATTTTCTTTGCACGCATGTTGCTGAATCGGTGTAGGGCATTTCTGCATAAACTTCTGGACCGCGAGTGCCATTTCTT-----------------------CTTCTAGGTCCTTTCCATTGCCTTCATTT-------------------------------------------------------------------------------------------------------TCCATGCACTGCTG-----------CTGGGTTGTTTGCAC-CCACC------------------------------------------ATTTCAAAAGCAGGAACCTTCCTTCCCCTAGAGTGTAACCTAATTCTGGCGCCGGCTGGTGTTTGGTTTATTCCTCCACGTGGCTCTTATGGGAGCTTCATTTTTTGCTCCTAGGATGGGACTGGGATACAGCGGCAGGGTGGGGAATCACGGAACGTGCTCGGAGGCGGCCAGGACCCC-----TGGCCCCCTGGGGCCCCAGGAGCCGAGGGCGTGGGGAGGGGATGGGAAGAAGGGTTGGGCTGGGTGAATCAGAGGGCGTAACAGGTGTCTCAGCCGCAGCTGCGCTAGCCGCTCGCTGGGGCTCCAGGGACAGGGTTTTCATTTTCTCCGGGTTTTTTTGGAGGTGAGAAGGCGGCTCCGAGGGGGCCCTCCTTTCCG--CCAATGCAGGCCACGGTTGTTCGTCGCCTAGCAACTGGCGGAGCCAATCAGCGACGGCCGGGCCTGCGGCGCCGACGCGGGGCGGGTTGGGAACTAGAGAACCTGCCGCGGCAAGGGGCGGTGCCAGAGGCGGGGCGAAGGCCG-CTGGGCGTGCGGCGGGAGGGAGGCGGGAGCC----CGCAGCGGAGCTTGTGCGGGCCCGCAGGGCTGCGGGAGTTGCGCGAGGGAGCCGCGAGCGGTGCCTCCTCGCCGCTCCCGG-GCTGTGACGGTGAACGGCG

a score=28345
s chr3           146405021 2404 + 160039680 AGTCCTCCGAGGCTGCCGCAGGACTTAGCGAGTGAGGTCTGCC--GCTGCTGCAGGGGTAGGTGGCTCA------TAGTGGTCCAGCCCCACGTTTAGGGGAAGAACTTACATCATCGCAGGGGCAGGCTTGTTTGAGAAATTATTTGGCCCCGGATTTTCCAGTGGTGTAGAGTGCGTAAATGGTGAGCTCTGTCCGGGT--CAGCACATATTTCTCCTGGTGCAGATTGCTGGGTTATGCAAGTCACCT-GGGCCCAGGAAATAAAACTTGCCCAATAATTCCCCA-TCAGCACCAGTAGAGGAATCTTTACATTAAT-----ACCCACAGTTCAGGCTCCTTAGTCCTGCGTGTCAGATTCATAACCAGCCACGCCGATGCAGTT----------GTGAGAGCCGGGAGTTTCTTCTAGAATCCAGGCTGGATGAAAGGTGGAGCCCAAGGATGAGAGCCTTCTGGATTTGATATTTGCT------------TCAATTCAGTTTAGAGTCCAGGCCTGGAGTTAGCTGAAAATAGTG----CTACCATGGAGCCCGC--------------AAGGTTCCGGAGG------AAAACCTTTCTAGTCCCA-------AATTTGATCTTGAA-CGGAAAGGTCTGTATATGACGTGACACATTTACGAGGCTG-------------------------------------------------------------------------------GATAAAATTCAAAACCGTCGATCCAGCTAGCAAAACTTAAGCCATCCAATCTCCTTACTCC----CCAAGAGCCTGTGGGCCCACGAAGCTTAGAGTGTTCATTCAAACTAAACAAG--AAAAGCTGTGCTCCCAGTCGACACTTTGTCCTGCCCGGTGTGCACAGAAGTTCCTCGTACAAAGTGGCTCTCTGAGAGGATTAGGAATGGATAGAATTCAAACCGGGGC-GTTTTCTTTGGTAACTGTTGGGGCCCCTACAGCCT-GTCATTTTACACCCTTCCTTTCCTTCTTGTTCTCCATCTGTACAGGGAAGATAATAG-GTCCAGGGATTAAGTAACAGGGCCACAGCAGCTTGGAGATAACTGCTGGGGCCGGGCCACTCCAGGATGAAATGTGAAACTCGATCCATGACACACTTGAGCCTTGTGACAAGACTTGTTAAGTCCACAGCATCCTAGGCTTGCTCAGGCAGGTGTACGCACCATGGAAAAGTTAACTGTTCATGTTA--GCCCAGAAGGCCTCCAACCCAGCCCAGTCAAATTATGTACTTGGGCTCTCTTAAAATGGGAAAACTGGACAAACCAGCTTGTCGGCCCAAACCGGTTAGGATACAGATTTTGTGAA------------AGTGCCCTC-ACTTAGCATTCAGCTAGAGAGAGGGGGGGGAGAGAGCGCCTAGAAAACACTTTTCCACA-----GGGACTTGAA--------TCATGTTTACATTGGAGCAGTAAGCCCCCCCCCCTCCCACACACACACACTGCTCCTgtctttatcccagctccctgggaggctaaggtaggggatacgcgtgagtttaggagtcccagacaaagtagaacaacatacagatcttcataaaaaacaaaCACCTTTCATTCTGAACGACCTCACACGTTCCTTGGGGAACCAGACCAAGCCGGGCCATGCACATGCAAGGCTAGGGTTCTGTTGCTGAGCAGTGAAACCCGGTGCGCCTTGAttctgaggcaaggctgccttgttactagcttgcccaagcagtccttgaacttgcagttctcctgcttcagcctcccagaagctgggcttataggtttctaggctcagtttcaAAAGTGATTTTTAGTGTTAGCTTCCTGTATCTTTTACAGTAGCTGTGGACTCACCTTGTTGGCTTAGCCATTAGTTCATAACG----------AGGCTGTGTGAGTCTGTTGTGTGTCTTGGGCAATTATGG--TTAGGTGGTTGTGAGCGTACATCTTACCTTAAAGCCATGAGCCTATAGAATGAGACAGTAGAGAAACACA--CCATCCATTATTAGTAATGGAAAAACCTAGATTGATACCATGTGATGCTGGTCCAATATTTTGTGTAGGAACAGATTTGTTG-----TTTGTTAATAAatctattctttcagtaagcatttattgtcagacactcagctgctacttgccaggcccaaggacaaaaag-atgTGTTGCTCTGAACATTTTGTACTTTAGGAGGTTTTGTGTGGAGAAGGGGAGAAATGCAAATGTGGGCGGGCTTTAGGAAAGAAGGCCTTTCAGTTGTGTCCTGAC-----AGGCGCTCGCCAAGCAACT-GTGCGTTGGGCACAGCAGAGCAGGTGCAGGTTACAGGTGG-TTGGTGTCGTCCATGTGCAGCCGGAGCTGCATTAGCGACAAGCGTTAAGAACAGCGCTGTGAACCTTGACCAGAGGGCAATAAGGAATATCTAAAGGGTTTGTTGGGGATTATATTGCTTCTGATGTAGTATGTCTGCCTAGGTAATAATTTGCATAGTCC--ATGGCCTCTGGACCTTGATGGTCTAGATAATACCTGAAAGC
s HiC_scaffold_1 132887261 2159 + 233722169 AGCCACACGAGGCAGTCGTTAGAATGAGTTATGGAGTTGCCCCTGGTTGCTACTTCAGTAAGCACCCCAATAAGATAGTGGTGTAATTTAAAGTCCAGGGGA-GAGCTTACATCATTGAAGAGGCAGGAATATTTGAGAAAAT-TGTGGTTTAGAATTTTCTGGTAAAGTACAGT----AAAC--CGAATTGTGTGTGAGTTCCTGCATCTCTTTGAAACTGTGGGTATCGCCCAGTTATGCAAGTCACTTTGGGCCCAGGAATTAGAATCTGCTACATAAAAGTGCACTGAGCACACATGTAGACATTTTTATATTACTCTACTACTCCAGTTTTAAGGTTTGTGAGCGTGAATGTCAAAGTCATTGCTAGCAATGGAGATACAATTCTTGgtcaatgagaaaactgagatttcCCTAGAGG---------GGTTCAGAAGTGGA-----AGGGTGCTGGCTTCTTGGACTTTAGAGTTGCTAGGCTCCACCCAGCAATTCAGGTTAGAGTCTGTGTCTGGAGTTGGCTGTGAATGGTGAACACTGCCATGGGGCCCTTCTTGGTTCTTGTAGAAGAGACTGGAGGTGGAAAAAAATCCTAGCAGtcttataataataatttgattCTGAATCTTAGAAATCTGTAT--GACTTGACATGTTTAAAAGACTGCCTCAGATTTGCAAAGAATGAGATCCGGAGAGAAAAGAAATGCCCCTGAAGTTTAGATCAAGCTATCTTGAAATTCAGAAGTTAGATTTATAAACTTGGATCCAGCCCACAAAACTTAATCCATCAAATCT---TATTCTAGAGCTATCAGCCTGCAGGCCTAAGAAGCTTAGGTTATTCATTCAAACTAAACATGTAAAAAGCCAAACTTACC-TCCACACTTAGTTCTGTC--------------GCCCTTTCCACAAGG----------------------------------------GGGACAGTTCTTTTTCTTGAATGGCAGGGCCTTTTCAGCCAAGTCATTTAAtaccttttttcccttcctctttctccatctGTGCAGTGAAGATAATAAAGCCCTAGGATTAAGTAACAAGAGTGAAGCAGCCTGAAGATAACTGCAAAGACTTAATTATTCTAGGATGAAATGTGAAGATC---TCATAACACA-TTGCGTCTTGTGACAAGACTTGTTAAGCACATTGTGTTCTAAACATGCTGAGGcagatatatata------aaatgttaactgTTAAGATCGCTGCCTA-CAGGCCTGAAATCCAGCACAGTCAGATTATGAATTTGGGTTCTCCTAAGATCTAA---------CAGCCTTCTCTTTGACCAGAACTG----TGACCtaggttttataaaaatacatatttgagtACCTTCTATATAATATgcatctagaaata--------aaaaaatg---aaaagacactacACCAGAATAGTGTGACTTTAATTTATTCTTCATGCTTATATTGGAGCaataaactgggcgtggtggtgcacgcctata--------------atccaaACTGGTGGGGCAGCTGAGGTTGGAGAATTGCTTGAGTCCAG----CTTAGAC--------------------CCAtcatagaaa---------------------------------------ggagaaaaagtcCCAG-------------------------------------GAACAGT---------------TTGA------------------------------------------------------------------------------AAGCT-----------TTTTAAGGTGGagtt------------------------tttctgtatctttaaC---AGCTATGCAACTGACTTACTAGTTTGATTATT-TTTCATGATACAAAAGTTTTATACCCTGTgagtttcttttgtgtttctgacAGTCCTAGTATTAGCTGGCAGTAAA-----------------------------------------GATAGAGAAACACAGTACATCGTTCATTAGTAATGGAAAA---CAGCCTGGAAGTGTG-----------------CTTTAGTATCAGCAGGTTTACTGAATTATGCATTAGTGATTCTTTTAATT------GCACTTATT---AAGCACTATGCTGATACCTACCATACCTCAAGATAAAAGGTAATTGTTGCCTTGAG---TTTGCATAT----AGGATAAcaaaagaaaagggggaaaatgcAAATAGGAGAAGGATTTAGAGAAGAA----TTTCAGCTGTGTCTCAATGGAGGAGGAGTTTACCAAGCAGTTGGTATGTTCAATAGTATGGGGTGAG---GGATTGCAGATGGCTTGGTGGGGT-CAGACTCAGGTGCGATTGTGATAGTGATAAGGTTCAGGAAAGGGGCTGTGAGCTTTGAGTAGCAGGTAATAGGAAACTTTGAAATGGTT--TTGAGGA--ATTTTACTTTAGAAG-AGTATTT--------GTAACAAATAATCTGATCTGAAAGCATTCTGAACAGGGACTGTTCAAGCAGTATCTAAAAGC

a score=45214
s chr3           146417973 2928 + 160039680 TTTTGAGGAAATTTTTATGCATTTGAAATGT--TTATTGGCT-CCTTCA---GTTTCTGATT-----AAACACATAAACTGAGTGTCACAGACAAATATGTTG-ATCTATT---TTTATAAATGCAGAA---GTAGAAGTTGAGAT---AGGCATTCATTTAACATATCTACCAGGAACGGTCACTAATGAACTTGTGCCATTTTGTCATAGACGTGTATATATTTCACATAAATGTG-TGTGGCCCTAGCTTGAAACT----------------------------------CAGAATCTTTGGTAATGGAGATGGTGTTAGC----------TTTATAATTACCTGAATATTCTTTTATTTTCAGAAAACAAAAATCTCTCTCAATATACCTCAGAAACAAAGATGTCTCCGTCCAGTTTGTACTCCCAGCAAGTTCTGTGCTCTTCAGTACCTTTATCCAAAAACGTGCATGGTGTTTTCGGTGTCTTCTGCACAGGAGAGAACATTGAACAAAGTATTTCCTATCTTGATCAGGTAGTGTGTTCTTATAAGAAGCA--AGAACATGCCATGTTATGTACCACAA-----AATGTCGAGGCCACATGAAAAGCATTTACCAAGCCTGTGTG------------GCCAGAGACTTAGACATGCAGAGCCACCGAGCCTCGGAGCTGGGCTGCCGAGGTTAACTGCTGTGTCTGCGGCACCACACGCCTCCTATCTCAGGCTCTTTCACTGGGATTCACTCATTTTACTGATAAAAAAGCTGGATAGC-------TTGTGCCAGGTCATGGGCGATTGTTCAGCAGATTCTAGAAAATTCATCAGTTTAGAAAATTCACCAAAGAATTTAAACTTGTTTGTATTCATTCTTTG----AATATTT----AATGTTACTGATCTGGGAAGAATTTTTTATTTTTCCCTTTTCACTGACTTGTCTATTAATCCATTGAAAAGCAATTATATGTTGAAATTTCAGTTGACAAGTTAAACCTGTATATTTTGTACTGCATAGTGTTTTTGAATATGTGTACACTCTGGGCTGACTCTGAAGTGCACATGGGTTTGTTTTGTGTCTGGGTGACTTCAAAAC------CTCTCTGCAGTTTTGGAGAATCAACACACTGTTACTAAC--TTATCAGTGTGCAGTTCAGTAGCTC----------ATTGTTGCTG--AACTGAAACATCCTGTTGTTGGACCCACATCTTCCCAGAGAGAACTGA-----TAAGCAGACGCTTCCCCCTCCAGGAGCTGACCACCTTCGGGTTTCCTTCCTTGTATGAAGAATCCAAAAGTAAAGAGGCAAAGAGAGAATTAAATATAGTCGCTGTTCTGAACTGTATGAACGAGCTGCTCGTGCTTCAGCGGAAGAACCTGCTGGCCCAGGAGAGCGTGGAGACACAGAACTTGAAGCTGGGCAGTGACATGGACCACCTGCAGAGCTGCTACGCCAAACTTAAGGTA-------CAGTCGTCCATCCCCCTGTCTCAGTGCTGTGCCACAGGACACGGTTCCACATGAGGCCACGGTTCCACATGAGGCCACGGGCTTCAGATGTGATTCAGGGTTGTGTTTAAAACCTGAAGTTTCTTTAAATGT--AGGAAGAGT-GGTTTCCAGAAATGAGCACGCATTGGTTG--CTGCTGCTCGCTGTCTGGGCTGAAGGCCTTGGTTTTAC----TGTTTCGAGGGTTCGCTGAATTCGTAGAAAG----TTAGGAAATAC----GTTCTGGGAGCAATC-------ATGGCTCCCTCAGCTCATCCAGCCTTGCTTGATAAAGAAGAGATGCTTCCTCACACATTGGTGCCAAGGAAAGTATTCCCGTGATA------CGGTGTAGATAC--CAAAGAAT---------GGGACTGGGGGAATGAGCCGGACAGCATCAGACTCTGAGGACGTCC---AGTGCTGCAGGGGGCAGTAGTTTCCTGTGGCCGTGG---TAACCTTTCTCTGTAAGAAAGAACAGGCACTTTCCACAGGGCCATTGACCTACCATCTTACCATAGAGGATG-CTGTTGCTGATTTCTGGTTTGCTTTCTTTTCCTCCTTATAAAAAGCCTTTTTTTTTAAATGGTTTTCTATAAAAATGTATTCCTCCCCCAAGAAAAGAAGAACCA-GCGTTTG-TATCACAGTATAGGAAAGATTTACATTATAGTTGCATGTTATTAAGAATAACCATACAAACCA--------CTTTTCCTCAGTATTCT-----ATATTAG--GATCGATTCACGAGAA--AAAGGCTTTGTGAGTGTACGAATACTCTTGGCAAG-CGGCTTCCGTGTGGTTTTCCATCTGTCAGTTCTTGGC---CTCTCTCTTGCACTGTATCTGTTTCCTACTCCTCTCTT-------AAGGACAGATACTG------------AAAAGCAAAGTCAGCGCCTTGAGTCTAT----TCTGTTGGAGAG---CAGGGCTTGGTAACGTTTGCAGGGTG----------GTA-GAGTGTGCTGTGAAGTGCACGCGCTGTGCACTG-CCCTGT-TTGTGA--GCTCCAAGCACATTTGGGGGTGCTCTATAGAAGT--CACAGTTCGTCCGTGGCACTTG-TTCTTTTAACCCGTCACTACCTC---CCATGTCTTGTCTGTCCTCAGTGCAGGTGCAGTAACA-CAGCCTCCC----------ACAGTGCTTTGGGCGTCTTGTATGCCCGGTTTGGGAAGGACA----GATAGATTGTGCCACCGTGCATCCTGGCTAGCTGGGGACTGCT-GGGCTGGAGAAGGTACTTACAGGTGCTTTCTAGGACTGT----GAGCT------GTGTGTGCTGCAGTGATTCA------GGTCCTCTTATCAGGACCTGAGTGGGAATCAGGCTGATCCAGACCTGTAAACCTGGAAGGCCGCGTTCTTTTCCCTG--------------GGTT------GGTGCTGTGTGGTGATCTGGGCAGAGTGCGATAGAATGATGCAGTTAAGCTGCAGAC--CACGGCCTTGCCTTTAAGGAAGGAGC-------TAGAACTTCCCAGAGCAGAG----TGCTTGACTAGCGTCTCTTCTAAGTTGG-ATTTGACCTGGGTCAGAGTCTGTT--ATTTAGGTTAGCATAGGACAGAACTCTGT--------------------------------AAGGTTTCTAGATCTAACTTTTGTGATTGATTCA
s HiC_scaffold_1 132905066 2985 + 233722169 tttcaggaaaattttTATGCATTCAATATATATTTAGTAGCTGTCCTcatatgttttttcttcctttaatgacAGGAACTTTGAATGATGTAGAAATGTGTTTTATCTGCTGTGTTTGCAAACCTAAAGCACTTGGAAGTTAAGGTCTCAG-----CACCTAATATGCCTAAGAAGTAC-------ACTTCAGTTGTGTCTTTTTG----GGAAACTTATATCTTTCATTTAAAGATGACTTTGTCCtaatttgaaaatactttcatgtatataaatttatttcataataatataaaatcttTGGTAGGGTAGAT--TATTAGTGtcacatgcatttttaaatag-tgcttattgattttttttcagaaaacaaaagtatctCTCAATATACCTCAGAAACAAAGATGTCTCCATCAAGTTTATACTCACAGCAAGTGCTATGTTCTTCAATACCTTTATCAAAAAATGTACACAGTTTTTTCAGTGCCTTCTGCACAGAAGAGAACATTGAACAAAGTATTTCATATCTTGATCAGGTAACGTGTTTTCCTAAGAAATAGTGGCAAAAGTCATGTTACATATCAGAACGTATCATACCAAGGTTATA-GAAAAGCATCCTTCAGGCACAGGTGTACCACACAGCAGCCTGGAGCTGAGGTGTGCAGA------GAACCTTAGTGATG------------------------------------ATGAAATCTAATTCAGGC--------------TTACACATTCTGTTG-----GGAGCGGGTCAGCCTTGCCATTATCCCAGCTCTTCTACAAG-----AGCAGAATCTAGAAAAAGc-ccagtttttaaagtt------------------------tttttgttctttggaatagtattttttaaatattgttgggcagg-------tttttctgtttctcttggaGAAGATTTCT------ATCCATTG----------ttctgttaaatttttaattga--------------------tgcattgcgGAATGGCTCAG--------------TTGACCTAGTTAACAGATACAT----GCCTGTCTCCT---------ACTTGAAATCTGTCTACTCTCAGCAGTTTTTAAGAATACCTACATTGTTGTGGGTGATAATCACCATGTTGTACAATAGCTCTCTTGAATGTGTTCTTCCTGTCAACTGAAATATTGTATCCATTGACCAACATCTTACCAAGGATGGCCAGCTTTCTAAACAACATTTTCTCCTACTAGGAATTGACTACTTTTGGGTTTCCTTCATTGTATGAAGAACCCAAAAGtaaagaagcaaagaaggaaTTAAATATAGTTGCTGTTTTAAATTGTATGAATGAGCTACTTGTACTTCAGCGGAAGAACCTTCTAGCTCAGGAGAATGtggaaacacaaaatttgaaactGGGAAGTGATATGGACCATCTGCAGAGCTGCTATGCAAAACTTAAGGTAGAAATTTCAGTTGTATTTACAC----TCCATTATTGTGT-----GACTCGGTGCTA--------------TCAGTAT----TCATTGACTTTA--------TCAAg-------taaaagctttaattttttctaactgctaattaaaagtaaaattaaagtaATTTGTGCATATCAATTGTATTACTTTCTAATATCTATATTGGAAGCATTGATTttatgaaatacttag-taatttgCTGAAACTGTTGAAAGCTAATTAGGAAATACTTATGTTCAGAGAGGAAAATACCGGGAGGACTTCCCTACCTCATCCTGTGTGGCTTAACA------ATATTTTTCTTAACAATTTCTTAACAAT-------TTTTCTTAACAATTAATTGgtgcaactacttctaagacttTTAAACCAAAATTCAGTAGTAAAAACTGAATTTCACTAG----TAAAAACCCCCTAGAGTTCTAGAGAAGACTGTGGAAAAGTGCATTATTAAACTTAACTTCTATCTGAAAATAA-------CACTTT-CACAGGACCATTGACCTGCTATATTCAGATGTAGAACATTTATTGCTcctttttgatt---ttgttcttcctgttttttaaa--------cttttatattttcctcttataaaacaaaaacttatttCAGAAGGAGAGGAACAAGGTGTTTGAAATTCTTGTATGATAAAAACTTACATTGCAGTTACATATTATT-AGAAAAGTAATATATTCCAAACCTAGTATTTTCCTGAGTACACTAGTAGATATTGGTCTCTCTATTTGTGAGAATCAAAGactttgt---tatttgtatacactTAAGAAGTCAGCCTCCTTTTAGTTCT-CATCTGTTGGTCCATGTCCTTCTCTTTCTTGCTGAGCATCCTCTCCCTCCCTATCTCATCCCTtccaggaagagataacaataaaaaaaaataaaaataaactcggGATTTTAAATCTCTGATCTCTGTGCGGGAGTAACAGGGTCT----CCGTATACAGTATGTGAAAGTCCAGTAGGAGTGTACCGTAAAATAGAAGTGGCATAGAGTGACTCTGTAATGTGAGTGCTGTAAACCTTTTCGGGGGAGGTGGAGAGAAGTACCTTAGCTGCTCACTGGCACCTGCCCCTTCCAGTCTGTCACTGCCTAATGCTGTTACTTGTT--TTCTTAGTTCATGTACAGTGATAGCAGTATGCTTCTTTCTAAAATAATGTTCT-GGTTTTTTGCACATCC-ATCTGGTAGGCCCACGGGTAGAGATTATTCAGTTGTGTGTCCTGGCTGACTGGGGAACTCTGGGGGTAGGGAAGAGATTCA---GTACCTTCTAGCCTTGTACAAAGGCTCTGATAGTGAATCCTGCATTAATCCAAACCAGAGACACCAGGGGAGGGTCCTGCTGTGGATCAGGCTGATCCAGAGCTGTAAACCTATGAGACAGTATTTTTACTCCTGCTCCCCCTTTGCCAAGTCTTCACAAGTACTAGTGAGTAATC-------------ATATAATGATGTTGATAAACTGAAACCAACACAGCTTT-TCTTTAAGGAGTGATCTTTTTATTAGGACTACCAAGAACAAAGAATATTCTTTTC-AGGATATCTTCTAATTTGGCATTTAATGTGGTCCATAATCcctttattttggctcatcttTGGATAGAAATGTGTATTTAATGTAGAAAGTCACTGGTCTAGCTTTGAAAGTTTCTGAATCTAGC--ATATGATTCATTCA

a score=10705
s chr3           146422626 1171 + 160039680 AGCCTTGAAGAGAATTCGTCA----GGGGCAGCATCCGAGAGAATGAGGC------TTTGAGGAAACCACGTTGGAGTTCTTGTACATAAA--------TAAAAATAAAAATGAATTTAA-ACGAGGCACGTGATTTTATATCTTAAAGTTGGTTGTAATCACTTTAAACAAACGCTCACGGTTGCACTGAGAGGACTGCAGCTCCCATGT--GACCTGTCACTGCCCTTCTGAGGACACACTTCCTGA----CTCCTGTCAGTTTTGCTCA-AGTGGCGTATTTCACGTTCCAGGAGCAGTTGGAAACGTCCAGGCGGGAGATGATCGGGCTTCAAGAGAGAGACAGGCAGCTGCAGTGCAAGAACAGGAGTTTGCATCAGCTCCTGAAGAATGAGAAAGATGAGGTGAGTTGT----CTGCTCCTGTGTCTGAGGTCAG------------------------CTCTTGGTTTTTGAA------------ATTTGAC-----------ATGTGACATGATGGTCAATTTGCTTTTAAACAGAACTGTCGA------TGCATCCTGTGTGACACTGGCATGGTGGGT--------GGGCAGTCCTGTGCCCGTCTTCTGCCCCTACCCCAAGA---CTGTTCATTTTCTT--AGTAATACCTGCCAACAGGTAGTGTCC-----------CTTGTACTGCCTGTCCTTCCTGTACTGAGAACCACGCCCTTTCTC-----------------TCCAGT----ATCCTTTTGTGTCTACCG-AGTTGTCGCAGGTGCCAGGCTCCATGCCTCACCCCTCTGCCTCTGCCACCTCATTTCAGCAAGGGCTCGCTCAGCAGTGGAAGCGTGCTCATCTCCCTCTGGCTCCTGCCTGCCTAGGGACCAGTGCTCTCTGCACTGAAGCATC-TCCCCCTTGACCCCTGGCATGATGCTAAGTGTTGCCGTCTTTCATCTAGAGAAAGAATTAACCCCATAAAATGGCCACAGTACAGAGAACTTGCCTAGGGTGTACAACACTGCAGCATTTCACATTAAAAAT-TCACTTCTAGTTCAAAG-------------TCAGC--------------ACTGTGATTTTTAATTTAATGGATGCTTAGACGGCTGG---CTTCTGGCTTAGTGC--ACT--------GTAG-GACAAGGAATTACAGAGCTAGTGC-TCTGAAGGCATTGCTTTATCATGCGTCTGAGGATAAACAGTTGGGTTTCCATTCATCTGTCCATAAGAT----AGCTATAGAAATA---TTATTTTCAGTGTTTAGT-TCTTTTAACTAAGAAGCCTGGAAGGAAGTCTGCTT
s HiC_scaffold_1 132909025 1256 + 233722169 agtctttaaaagaaattttaaatatgtggCAGCATTATGTAATAAGGGGCGAGCCTTTCAAAGAAATCATTTTGAAgctctttaatataaaatttggTGTTTAAATGATACAAAACTTGACATTtagaatctaattttaaaatattaagcttGTTGCA-TGacattaaat------ttgatttttagcTAACA-------AACTAGTGTGTAGGACTTGTTATTGGTCTTTTAAGAATGTAGCTGTTGtgaattttgtgttaattttaatcagaatggcatGG---ATATTTTAGGAACAACTGGAAACCTCTAGGCGGGAAATTATTGGGCTTCAGGAGAGAGATAGACAGTTGCAGTGCAAGAACAGGAATTTGCATCAGCTACTGAAAAACGAGAAGGATGAGGTAGGTTATTTTATTGCACATGAAGTTGAAGtgaattttgtatgtttgtttttctttttctttttttttttgtattggtaagaatcattttactttaaaaaacactGTTACTCATTGATCAGTTTGGTTTGGGGGACCTCTGTGTACAGTATTGTGTCCTATTTA--GCTGACAGCAGGAGCCTGCCTTAGCACAGCCctcaccctccctccctccccagctccaggGGATCTGTTCAGCTTGGTGAATTCACAGTTGGTAACAGCCGGGGCCTAGAGCACCTTGCCTGCACCAGCCATCCTCACTGAACACGTCATCACTCACTTTTTCTTAGGCACAAAGGTGCTTTCAGTGCAGATCTTTGATTCTCTGCTGCACCTGTACCTGGTACCTGGTACCTGGCAT--GCcccctgtttttg---ttttagttttgtgatTG------TAGGGATGGAA--------------CCCAAGCCCTTGCCC-----AAGCCAAGCACACACT--ACTGCACCATCAGCCCCATCTGCCCCT----------------------TCTTTCA-CTAAACAAGGACTTCGTTCCTCCAGGCAGTT------------ACTTGACTA-AATG---AGCACAGGAGCAATTCGTTTTAAATGTCTTATATCTGGACCAAAGGTGCTGACTTGTTTTAGTGGTTACTTGGTCTAATTCTAATTTCTCACTTGGTGGTTATTTAGAATGATGACATCTTTTGGCATAATTCTAACTTTTCTTTAGTAGTTATATGGAACTATGGAGTTaatgcatttgaaaatat---tttgtaatgtaTCTAagaaaaaactatt--atttttattactgtgtac-TATGATCCCCAACTATAAAAATACACTTACTTTCAGTGTTTTGTATGTTTTAACTAAAAGACATTTAAGGGATTGTATTT

a score=20834
s chr3           146427318 866 + 160039680 TTAATAGGACCCAGCAAGCCTTCTCTGTAGTGGCCCGAGCA---------------------------CCGAGTTAAGTTCAG-CTTGCTTCCTCTGCCATTGAAGAGAAGG-TCCCCTAACAGTATGTACGTAGGTGGTTGTGGCTGCGTTCTAGGAAAGCTTGATTTTCTAGTGTA---AGCTGGCCAGCAGCCTGTGGTTTATCATCTCCTGATAATGAAGTTAACAG--TGACATGTAACATCAAGTGCC-ACTGTGTGCCCCATGCTGCACTCCCCTCTGTGAAGTACTTTGCATCCCTTTGCCCTCAG------CAACT-----GGAGGGTTCTCCTCCTCTTCTCCCAGTCAGGAACGAAGCAAGCTTAGCATCTGA------------AGACTTAGCCGAGCCTGGGGG----TGGGGTGTGGGGTGGGGGGGGGGTGTGTGTGAAGAGTCCTGACCTACGAAACAAGTCGGCTTCAGTCTCCAGTGTGTCTCAGGCAGGGTAGGGTTTCAAGACTGATGGAGTTTGATGACTGATCAGGTTTTGTGCTTTTATTTGTAGCCATGGATGTTTTAAATTATGTGGGTCGAGCTGATGGCAAACGAGGCTCATGGAGGACTGACAAAACAGAAGCCAGGTACGCCATGCCGCCTGACTGACAGTGTAGCCGGGTTTGCCACCAGCCGACCGGCGTGTGTTCTCACACCCGTGCTTTCCCTCCAGGAATGAAGATGAGATGTACAAAATTCTGTTGAATGATTATGAGTACCGCCAGAAGCAGATCCTGATGGAGAACGCGGAGCTGAAGAAGGTCCTCCAGCAGATGAAGAAGGAGATGATCTCTCTCCTGTCTCCTCAGAAGAAGAAGCCCAGGGAAAGAGCAGAGGACGGCACAGGCACTGTTGTAAGTGGCCCTCTCTG
s HiC_scaffold_1 132912375 895 + 233722169 tTGATAGAGCATGGCAAACCTTTTCTGTAAAGGTCCAAATAGTAAACTTGTTTGACTTTGTGGGATCTCCAAATGTTTTTTAGACTTACTGCCTCTGCCAGTGTAGAGAGGTCTCCATTGACAGTATGTACACTAACAGGTCTGGCTGTGTCCCAATGAAACTTTATTTACAGAATTAGGTAGCTGACCTGCAGGCTGTAGTTTGCCAGCCCTTGGTAATCAGAGTGACAAAATTCCATTTA---TTAAATACTTACTGTGCTCACC---------TCTCCTGGGTTAACTGCCTTA-ACCTTGTTTCTTTCAGTTGCAACAACTCTTTGGGTAGATACTTGTTTTATTCCCATATCAATGAA--AAATAAGCTTAGCAGTTAAGTAAGTCCACCAAGATCGCTCAGTGCTTATAAGCAATTGAATTATAACTTGAAATTAGGCCTTTGGTTCCATGTCTCAGCCTATCTACCAGATTAATTCACATCCATAGTCTGT-GCAGAATGCATTAGACTTCTAAGTATATGTGGtaaga------atttgtttttgtgttcCCTTTTGCAGCCATGGACGTTCTAAACTACGTGGGCAGAGCTGATGGAAAAAGGGGGTCCTGGAGGACTGGTAAAACTGAAGCCAGGTAGAGC---CTACCCTGCTAAGTCAGTGGTCAGACTTTGCTTTCTCCATTACCTTTCTGTAATGACA-----GTTTCTTTCTCAGGAACGAAGATGAAATGTAtaaaattctcttgaatgattATGAATACCGTCAGAAACAAATCCTACTGGAAAATGCTGAACTAAAGAAGGTTCTTCagcaaatgaaaaaggaaatgatttctcttctttctccccaAAAGAAGAAACCTAGAGAAAGAGCAGATGAGAGTACGGGAAC---TGTAAGTAGCCTTTTCTG

a score=13021
s chr3           146430870 241 + 160039680 ATGCGGTGCCCTGGTGTACAGCCACTGCGAGCTGCTCTTTATTCCGTCTGT--GCCGTAGGCTATCTCCGATATAGAAGATGACTCTGGGGAACTGAGCAGAGACAGCGTGTGGGGCCTTTCCTGTGACACTGTGAGAGAGCAGCTGACAAACAGCATCAGGAAACAGTGGAGAATTTTGAAAAGTCATGTAGAAAAACTCGATAACCAAGGTAACTACTGCCCCAGGGCATGCAGAGGGGGT
s HiC_scaffold_1 132913798 243 + 233722169 ATTCAGTCCCCTCATCTATTGagagttcattctgtttttttttcctttcttcatttggaGGTTATCTCTGATGCTGAAGAAGATGCCGGGGAACTGGGTAGAGAGAGTGTGTGGGACCTTTCCTGTGAGACTGTGAGAGAGCAGCTTACAAACAGCATCAGAAAACAGTGGAGAATTTTGAAAAGTCACGTAGAAAAACTTGACAACCAAGGTAACTCCTGCCTCACTGCCTGTTAAGAGAGT

a score=24675
s chr3           146432448 700 + 160039680 aacaaactaactggcacCCTGGGTTCTGTCAGCTTCGAAGGTACACTCAGAGGGCCTTAATGAGGAGGACGTCATCTCACGACAAGACCATGAGCAAGAGACTGAGAAACTGGAGCTGGAGATTGAGCGGTGTAAAGAGATGATCAAGGCTCAGCAGCAGCTCTTACAGGTAAGCAGCGTGGGCAGGCAGGCGCTCCCCCACATCACTGAAC-CCACCACGGCCTCTGGAGGCTCTCCCTACACGTCACGGAACCTGGA-AGACTTCTGCTGCTTCATCTGCAGGAGTCAATAGACGTGACACTTCC---ATCTCAGTTGAGTTCTGCCCTAGCAGTTGGACCACAT-CCTTTCCTCACGTGGCCCCTGCTTTACCA-CGGGAAGCAGCACATGGGAAAGCCGGTTCTCACCGGCTTGCTGAGTCCTCATAATGTTTGTCCTTGGC---CACACTGACCTACTGTCC-TCACTGTCACTTGAATCTGTGTGC---CCTAGTAGGTGTTTCCTG--ACTTAC-ATACTTTAAAATTTAATAGCAGCAGCTGGCCACCACGTGTGATGATGACACCACCTCACTGTTGCGAGACTGTTACTTGCTGGAAGAAAAGGAACGCCTTAAAGAAGAGTGGACCCTTTTTAAAGAGCAAAAAAAGAATTTTGAGAGAGAAAGGCGAAGCTTTACAGAAGCTGCCATTCGATtggggttggaggt
s HiC_scaffold_1 132915546 678 + 233722169 AACATACCAACTTAA---CGGGTTTGGGTTAGTTTCAAAGGTACACTTAGAAGGTTTTAATGATGAAGACGTAATATCACGACAAGACCATGAACAAGAAACTGAGAAACTGGAGTTAGAAATTCAACAGTGtaaagaaatgattaaaacacAGCAGCAACTTTTACAGGTAAGT---GTGAAT-----------------TATCTTTTCGTGCTGTTACATTCTCTGAAAGG----CCAGAAGTTTACTAAATCTTATTAGATTTCTATTCTTTAATATCAAGAGGTCTATGTACTTGACATTTtccaaaactaaactaaattctCTGCTAGCAGATACGTCGCATACCATTCCTTAAATG-TTCATGCTTTGCAAATGAGTCGTAGAGTTTGAAAAAACC--TCCTATTTGACTTGGTGA-------TCATTTCTGACCTTGCCATTCAGTTTGACCTGCCTTCCCTCCCTTTCATTTCAACCTGGGGGAGAGTGTTGTGGG-ATCCCCTGGAACttactatgttttaaaatt-aatagcaGCAGCTTGCTACTGCATGTGATGATGACACCACTTCACTATTCCGAGACTGTTACTTGTTGGAAGAGAAGGAACGCCTTAAAGAAGAATGGTctctttttaaagagcagaaaaagaactTTGAAAGAGAAAGACGAAGTTTTACAGAAGCGGCTATTCGCCTAGGATTGGAGGT

a score=22252
s chr3           146436458 966 + 160039680 TACAGGTGGCCAGAGGGGAAAAACAGCTGG----AGAAGGT--------CTGAGACTT----AACAATGGAG---TGATGGCTGTTCCTCT-------TTGTTCTGATAGAGAAAGGCGTTTGAAGAAGAGCGAGCCAGCTGGGTAAAGCAGCAGTTTTTAAACATGACGAACTTTGACCACCAGAACTCAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAAGTAAGTGTTCCCCCATGTCCAGTCGGACTGTGCGCAAGGCAGGGGCAGAGCAAGCCTGCAGCACCAGTGTGCACAGGATGCCCATCTGTGGAGCCGGAGACCTAGCCTAAGTGAAGCGGTTTCTGGTTTTAATCTCTCTGCCTACCTGTGTTCAGGTTCTGGCGCTCAGACCCAGGACCTCAGCCCATAACAGCTCCCACTCTTACCAATACCCCTGACCCCCAAAACCAGCTTAATGGTTTATTTACTCAAGTCAGAGTAGGGCTCATGGGAGAAGCATGCATATCAAAAGC-TCTTTTGTGAATTTATAATAATGCCATGTTCTTGAAAACTTGTGGTCTTAGAAACTGACCGTTTTTAAGGTAGGCCCCTCT----GTTTGCGGAATGTGTGACAGAGATGACAGTTAACCTGTTCTTTCTCAAATCCCACTCTAAATTGCAAATGGCTGATCCTGGTTGGTAATCTTCGAGG---TTGATATTTTACCATGTGCTCTGC-------TCTTTCTCCTGCATGTAAACCAGGTTCTGATCCAGACAATCTTATAGTCCACTCACGGCCACGGCAAAAGAAGCTACACAGTGTGGCTAATGGGGTGCCAGCTTGCACATCAAAACTGACTAAATCTCTTCCTGCCTCACCTTCTACTTCAGACTTTCGCCAGACACATTCATGTGTGTCTGAACACAGGTACTTGTTTCTAAATGACCTTT-CACATACTTCTAAAAACAGTTAACATT-GTATTGCTTAGGAGAAGTTGTTATTGTtggtgg
s HiC_scaffold_1 132919265 845 + 233722169 TATAGGTAGCCAGAGTGCAGGCACAGCTAGCTAGAGAAGTCATGGTAAGTTGGGACTCTGTGGATGTTGAAGCActgattattatttctttcatttgcttgtttcGGTAGAGAAAGGCATTTGAAGAAGAGCGAGCCAGCTGGTTAAAGCAACAGTTTTTAAATATGACTGCCTTTGACCACCAGAACTCAGAAAATGTGAAACTTTTCAGTGCCTTCTCAGGAAGTAAGTACTTC---------------------------------------------------------GTACAC----------TCTTT--AATCTGAACATTCCTCGGAATGAA----------------------------------ATACAGATTATTAATATAAAACCTTGGAGATCG--CTAGATCAg---------------------ttggct-----------tttaatattttatttactggAGTCAAAATGGAGGTGACAGGAATACCAAGCATAACAAAATTaactttta-----ttgtaaaaatatgAAGTTTTTGTGAATTCTGAgt----ggagattttatttttaaaagtagatccTCCTTAAAGCTTGCAGAATATGca-----------agttcatttgttctt--tcATACTTCATCCAGAATT-CAAATAAATGATCCTTGTTAGTTATTTTCACTATACTTAATACTTTATCATATATGCTGCCTTCCCACCCCTCCCCGCTTTTTATAACAGGTTCTGATCAAGACAATCTTACCATGCACTCAAGGCCACGGCAAAAAAAGCCTCCCAGCGTGTCTAATGGGTCTCCAATTTGCACATCTAAAGGGACAAAATCTCTGCCTGCTTCAC---CCACTCTCGACTCCTGCCAGACACGTCCCTGTGTTTCGGAACATAAGTATGTGCTCATACTTGGTCTTTATACATATTTCGACAAATTGCTAACTTTGGCGCTGCTAGGGAAAAGTTGACA-TATTGATGG

a score=73640
s chr3           146438551 3234 + 160039680 AGACGTGGGGGCAGTCAGACTTG-AGACGTTCGCGACCATCTGCTCTAAACGATAACCAAGGAGCAGATAA--TTAGCTTCTGAGATTTACCTTATTT-CCCCAACAGTTCCATCAGTGTGCTGAATATAACTCCTGAAGAAAGTAAACCAAGTGAGGTTGCAAGAGAAAGCACGGATCAGAAGTGGAGCGTGCAGTCGAGGCCCAGCTCGCGGGAGGGGTGCTACAGCGGATGCTCCTCGGCCTTCAGGAGCGCTCACGGGGACCGAGATGACTTACCTTAAATGTGCGGGCTGCAGTGCTGTTCC--------------CAGATGTGCGCTAGAGGAGTTGACACAGGGTGTAGCATAAAGTCAGTCGTC-----TAACTTAAG-ATGCTCAGAGTTGTTTGTTTGGACTTCGCTGTCTTCCCCCAAAGAGCTGAAATGCTAAG-CTACTTAAAAGGATGC-AAAGCTTTGGTTGTGTG---TTAGTAACAGAAGCCCCTGGCTCTGTGACTGCAGGAATGCAT-GGCGTTTGGATGGAAACAGAAGCGCTGGAATGA-TTGCCTCGC--CAGGTACCGAGAAGAGCACTTTTAGG-GACTGGTTCCTGTAAACATTAAATATTCGTCCCAAGTGTGGTTGGCATTGGAAGTGTAGCCTTTACTTGAATGTATACTGTAGATTTTTAACAAAGCAGGTTCTATATTTATTATGTTTAGTGTGATTTTGGGATTACCTCTTTCATATGTTTTGTG---------------------TCTGTACATAAATATACATGACTATGTTAAGAGGCTTTAAGGTTTAAAAACTTCACACCATGCTTGAGTATAGCATTTCATGCCAATTAAAATGTTTTCAGTGGCATGGTGTTTACAG--AGGTTAGGACCACTGCCACATGACAGTTAAG---ACTTTATTTTTAAGCCATCTGGGCAATAAAAATTCAAAGCCCCTTCA----TAAGCTGAG---TTCAGATAACTAGAACTACTAACGTTACATTTTTGAGA-TTTTTAAAGCATTGTA-TTTTATTTTATATATGTGAATGTTATAATTTCTAAGAGGAATATTGATTATGGAGTAATGGGGGAAAGACAAACGTATCTTTGAATAATAATATAAGAGCATTGGGTTGAGATATTTGGATGATAAAGGATATTTAAGATAGCTGGATGCTCATATTTTCCTTACCAAATGGGTGCCAGTACAGTCGTGTCTGTACCGGCCAGGGCTTTATATCATTGCCAATAATTTTGTAAT----------TAAAAAATTTTCAACTAGATCCCTCTACTAAAGAAATAAGACAATGT-GAAGCATTGACTTTTATAACCGAGACATGGCACTCTGGGCA---CTGTGTCGTCTCATTTTCAGAACAATCTTAGGATCTTT---------CTGTTTCTG-CTGCATGTTTCCTCGTAAGAAGTATGGCACTA-TGATAGTAATGACAGTAACATAAACGTAGACGTAGGCCCAGGCTTCTCCTGGATGGGTTTTCATCCAGCAGCTTTTAAGTGCCTCACCCTGCTTGTCTCT---------ACGCTGC-CGACACAAGCCCTCGCTTGCTGAGGCAGGTAG--TCCATCTGCCT--TTCTCTTTCCTTGTTCCTGC-----------------------TGTGACTGTTGCA-TTAAATTCATCATGC-TACCAAAAGTGAAGCCTTGTGTTGTCCATTCACTG--CGTGACTGT---GGGTTCCGCAGCTGCCGCCATCTAGCTGGGTCTGTAAGACAGCCCGACCTGATGAGGCACTGCCGCGG-----AGCAGGTGGCCTTACCACAGCAACCATGTTCAGAGTTTC-AGGAGCTCGCTCTTAAGTATGAGCTGC----------------CTGGTACACGATCACTTTTTT--ATTCTTTAAAGT-TTGACA---TTGCAGAGTTACTATAGTCCAGAAGAGGAAACCCGGCTAGGATGGTGCAATTATCTTCT--------------------GGTGAAGAAAAGCAATCTG---TTTTGAAGTAGTTACTGGTTGTTTCTATCCCATGTCCCCACAGGGATCTGTCTGTCTTAGCGCATACTTTGCCAAATACAAATATTCTTGTTGTTCGTTAAAAC----------CATGCCTTATTCCACAAGGAGGGTTTTCTGGGAAGGAACTCCTGCTTTCCTGCTGTGTTTGCATTTCAGTGTGGGCTGAATTCTCATACTGCAAAGAAATTCCCGAGA-------------AGGCTCGAAGGAAACTGTAGAAGCAAG----CCAGATC------CCTTTGGGATGTGCACAGCTCTGCCAGAGGCTGTCCATTTCCTAGCTCTCTTGTTTTGCTGCCCATTCCAATTCTAAAACGATCCCTA-------AGACATCCCAGAGAGTTGGGGGTGCTGCGCTGGAAGGTATGAGCCCACAGGAAACGAACTCTAAGACACCCCAGAGAGTTGGGGGTGCTGCACTGGAAGGCATGAGCCCACGGGAAAGCTCCAGGGACTGTCCCTTCCTTTGCAGGCATTTGCAGTGTACATCCAACACAGCAGGCTG---GTCTCAAGACTTGATAGTGACAGAAT--------CTCGTGGCTCAAAG-CCTCCTGGTAACCTACA-TGCTTTCCTGTTTCTTAATATGGAAATCTGAAACTTCGCACCTCAAATTGGGATTTATATTCTTTttttttttttttttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacactccagaagagggcgtcagatcttgttacagatggttgtgagccaccatgtggttgctgggatttgaacttcagaccttcggaagagcaatcgggtgctcttacccactgagccatctcaccagcccGGGATTTATATTCTTAGCATGGCCATTTTGAATTTTCAAGGCTTAAAAACTGATG-AAGATGTAAGATACTTTTCTACTCTTA-------------TTAAACTTACAATGACTAGAAACTTACTTGAAAGGCCAGTGACAGAAGAAAGCCATG-CTAAGA-TTAATAAAGGTGCATTTCCATACAGAAGTAATGTATTAAATGAT-AGGTTTGTGAGACTAGCCACAGAGAGTTGTTTACCTCGTTGTACAAATGAAGTTCAATATGTTGTTTGGG-----------------------GTAATTCTGT---------------------------GGTTCCTATCCTCGAT--------------------AGGCAGGATTGTCCAGAGGCGTGCAATCACCTGATGTTTGTGGAAAACATAGTCTATGGGGCATGATGAGGTG-------CCTAAAATGCAGTTTGAACCACCCCTG--TGGTAGGGCCTCCTGGAAGGCCTCGGAACCCCAGCGGA-----GATTTCTGAAGTATGTAAGCTTGGAGCACTGTGGGTTAACAGACCCCTCCTGTGATTGCCCGGCTGTGAGAATTCTTCCAAGTACTTACACCCGTGTGGGAGGTGTTCTT
s HiC_scaffold_1 132922925 3183 + 233722169 AGGCCTGGGAACAATCAGACCTGTAGGCATCAG--ACATTGAGGCATGAAGGATAA-----GAGAAGGTGGGCCTAACTGTGAAGCTCTCCCTTTTTTTCCCCAACAGTTCAGTCAGTGTGCTGAATATAACTCCTGAAGAAACGAAACCAAATCAGGTCGGAAGAGAATGTTCCAGTCAGACGTGGAGCGTGGCATCCAGGCCTGGCTCGCAGGAAGGCTGCTACAGCAGATGCTCTTTGACCTACACAAATTCTCATGTGGAAAAAGATGACTTACCTTAGATGTGTGGATGGGAACTTTTTTTCACTAACATATTCATCCAGTTTGTTTCCTCTGAGTTGAAACAGGGTGTGTCATAAAGTGAGCCATCTCTGATAATTTAAGAATGGTCTGAGTTGTTTGTTTGGACTAATCTGTCTTCCCCCAAAGAGCTGAAATGCTAAATCTATTTAAAAGGATATAAAAGCTTTGGATATGTATTTTTAGTAACAGAAGCATCTGGCTCTGTGAATAAAGGAATGTATAGGTGTTTGGATGGAAACAGAAGCACTAGAATGAGTTTCCTCTCTATAGGTATTAAAAATAGCACTTTTAGGAAACTGATTattgtaaatgtttaatttttgtccCAAATATAGTTGGCATTGGAAGTTTAGCCTTTACTTGAATGTATACTGTAGATTTTTAACAAAGCAAGTTCTATATTTATTATGTTTAGTGTGATTTTGGAATTACCTCTttcatatgttttaaataaagtaaaatttatgtatgttttgtacataaatatacatgattATGTTAAGAGGCTTTAAGACTTAAAAATTTCACACAAC-CATAAATATAGTATTTCATGCC------AGTGTTTTTAGTGATATTCTGTTTATAGATATATCAGGACCATTTCCATGTtatatttcagtttgtttttttttaaatccatctgGGCAATAAATATTCAAGGTTATCCCAACTTGGAGCCAAGCTCTTCAGAAAATCAACA-TACTGATATTACATTTTTGAGACTTTTTACAgcattagatttttattttatatatgt--agcatataattt-taaaaggactaTTGATTATATAGAGTGGTAGGGACAACTAAAGTACCTTTGAATAGCAATTTAAGGACATTGGTTTAAGATACTcagataataaa----atagaaaatgtctgaATGGAGGTAT-----TTATCAGATGGGTACCAGTACAGTAATATCTGTACCAGCTAAGGCTTTATATCATTGCCAataattttttagtattttttcaatgaaatatttacCATTAA-------TGTTAAAGAAATACGACAATATAAAAACATCAGATTTTATAATCCAGATGTGATACTCTGGACAATCTTGTACCATTTCATTTTCAGAACAATCCTAGGCTCTTTGGCTCTGTAATGTTTCTGACTGCATGTTTTCTCATGAGAAGTATGTTATAATTGATAGTAGTAATGCTAA---------AGATGTAGG-TCAGGCTCTTCCC--CTAGATTTTCATCACAAAGC-TTTAAGTGCCTAGCCCTGCTTGTCTCTGTACATAGAAAACTGCACAGGTCCAGTCCTTGCTAGGTAGAATAGTTTGGTTCCATCTGCCTTCTCTTCTTCCATTAGTTCAGCCACTTGCATACACTCACCCTGTTTATGGCTGGTCCATTTGAATTTGCCCCCCGCACCTAGCCTG----TTGGTGTCATCAGCTCACTGTACGTGACTCTTAGGAGTTGTGTAGCAGCAGCCGTTTCTCTAAGGCTGATAGGCTGTC------ACTAGAGTATTGTAGGAGACATCAGTGAATATACTCCTAACAGTAACCGTATCTGTAGTCTCAAAGAGCTGGCTCTGGAATGATAGTCACTCTCTACCTTCAGTTTTTAGTGCATGGtcacttctttaaaatattaaaaatgttaacaaaCTTTCAGAG-TACTATATTCCAGAGGGAGAAATCCACCtggaatataattattattattttgctctttagcAATACTGTGGTTGAAGGAAGGCaatcagaaattttaa---agttaCTGATAGATTTGTCAAGACTTTCTCCTAGGGGTT----------------TACTTTATCAGAAGTAAACTTGCTGGTTTTTAATACAAATGTTACTTCAGAATACTGTATTCCATgaggatagatttctagaaagcAGTATGTTCTTTGtta-tgtgtttccattttaaagtgAGTTAAGTTCTC-TACT----AACAATACCCTGGAGCCTTTAAAACTCAGATgtgaaagaaacagtaaaataaaaaaccccAGGTTCACGTGCCTTTTGTATTTGCATAGATATGCTACAAGT--TCCAATTCTAAA------TGT----------GTTCCAGTTCTACAGTGATCCCTAATCACCTAAACTTACCAAA---------------TGTTGGAATGCTTTCCTTATTGGAAAACTGAATCT-------------------------------------------GCACAC---AAAActtccaagattttcttttttttttctggggaatTCCTGGTACTAATAACACAGCTGTGTGACAGTCTTAACATTTAGCCATGATTAAATAATGTTACCTTCTGCTTGAAAGCCCTTCTAATAAtcttcagtgttttc----ttttcagcACATAAATCTGAA----------------------CTATATTGT-------------------GCCTCATTTGTTT------------------------------------------------------------TTACA---------------------------------------------------------------------------------------------------------------TGACATatccattttgaattttcaaaGC---AAAAGTGTCATATGAGGtaaaat--tttcctacttttaaatgtttacatCTGCAGATTTACAATGATAAGAAG-TTAGTAGCGGAATTAGTGACACCAGAAAATTATGACTAAAATTTAGTAAGTAAATATTTTGTCATAGAAGCAATAGACTAAGTGATCAGAGTCACGGGACAGTCTACAGCAAATTGTTTGCCTCATGGTATGATTGAAATGT----TGCTGTTTGGAAAGAAGTGTCatggactggggatgtaactcaacagcataagcacctgcccagtaagtgcaagttcctgagtttgatttccagtaccaaaaaaaaaaaaaaagaattgtcaaaATACTTGTGATAACATGGCTTTTGTGGGAAA-ACATTGTGTGGTATGTGGTGAGAAGGAATAACCCTGAAGTCCAGTCTTGACCTTCCCTGGTTGGGGGGATCATTTGAAAG---CCTGAACCCCTGGAAAGGCTTGGCTTTTGCAGTGTGTATGCCTGGAGTGCTGCGAGTTAACA-AGACTTTGTGTGATTGCCCTGTTGT-ATAAATCTTCAGAGTATCCTTCCTAATGTCAACTGTGTTCTT

a score=18726
s chr3           146449317 761 + 160039680 TTCCAGTCTGCCAGGATTAGAAATATATTAATT-----TGTTCCCGAGTATCCTTTGCTTTCCGCTCTTCTGAGAGAGCT-CAGAGAGATCCTTGCTTTGACAACATTTTGGTTCTGGGAAAAGAATTTACATCATTTAAATTTTTATTGGTGTTTAGGGAGTGTACAATAAATTTAAACTCATATGCTATAATGGGTGTTTTAATTGTCA-----TTATGAGTTTAATGACATTCAATTTCCTTTATAGCCATAAAGAGAATTTTTATTCCTGTTGCTACTTAAACAGAAGAATTCCCCAAAGAAAATGCCCA---AATCTTCAAAGTGCGTTCTCCTTCCAGCATTCAGTA-CAC-GCTGAGCAGAGCAATCCAGGTCACAC-CCCCAGGACCTGATGACCCTGTTAGAGCCCCCTTCCCTATTCTCATAGCCAAAGGAAAGGCTTTTCTTG-AGGTCATAT---------------------------------CTCTCAAGCAAAATCACCGCACAGAGTTTATCTTTAAATTCTCTTTATTTAATGCTGGAAAATCACAATACACACTT-AACCAAACATCTGGTAAATTGACAA--TAATATCA-CCCGTCCATTTTACATTTTAAAAAATACCCTGTGTAGAGACTTGGAAAAGAATGGTCTCAAACCGATTGAAGTTTAAAAAAAGAAAACAGGAGCTCTTGGAGTTTTACAGTGAACGTACTATTTACTACAAGCCAAGCACTGTGCTGAGCTATATTGGCAGGGGTGGGGTGCGGGGAGCAACGCCAAGCAAGAGATTCAAAATCA
s HiC_scaffold_1 132967890 731 + 233722169 TTCCAATCTATGGAGAGTAAAATTATGTTAATTATTTATGTTCCTAGTTAATTGAAGAATTA---TCTTCTGAGACAGCTGCAGTGAGATCTTTGTTGTGATAATATTTTGGTTCTGGGAAGAGAATTTACATTGTTTAGCATTTTATTGGCATTTAGtggctttaaaataaatttaaactcaTATGCTATAATTAGtg-tttaattgttattattttatgaagtttgTGGTATTCAATTTCCTTTATAGCCACAAAGAG--TGTTCATTTCTATTGATGTTTAAACACAAGTATCCTC------AAAGGCCCAAATAATTTTCAAACTGT-TCTTGCTTCTAGGGCTCACTAGCACTGCTGAACTGAGCAATCTGGGCCACATGTCTGAGGATATGGTAG------------CAACTTATGTGTTCT-ATAATGAAACAAGGAGTTCTACATGAAGGTCTGATTCACCCTAAGAGTAttgtactaaatttattttattcataagcaaatttat---------tttgtctttaaa-----tttatcttttattgaGAAATCACAAAATATACTTGAATGAAGTATCTGATAATATGGGAAATTAATATCATTCCATCTATTTAGAGTTTTCTAAAGCACCCTGTTCTGAGACCTGG-AAAGAAGAGCCTTAAGTACACCAAAGCCaatcaaa---------------tttgaattt-----------taatacttACTACATGCCCAGTACTATGCTGAGCT-------------TGTGCCGTGGG-----AGGCTAAGCAAGTGGTTACACATCA

a score=8185
s chr3           146450426 668 + 160039680 CTCCGCCCCGCCTGCCCATAGGACATCAGGGCCCGCCCTTCAAGAGGCGTCATTCCCGCAGCCTCCACCCCAG-GCATGGCGCTGTGTGGCCTCCCGGAATTCACTCTGCTGCTGCTGCCGCTGTTGGCAC----GGCTCT--------CGGCCGGGG---ACTGCCCGTGCTCCGAGGCTGCTCTCTGCCAACCGATCCGCCACCGTCCCGACTTCGAGGTCAGCACTCATTTGC-CCGTCGGTCTGATACTCAAGGCTG-----TAGAAGTTGTGCG-----CTCACTGAG--------------TAGCCTTAACCA-----------CCAGAGTCTTCCTCTTTTTAGATTTCCTTC------------------------------AGAGGTTGGGCAA-----------CTTCCCAGGCCGCAGACTGTGTAATGCTCCTG-------------CCTCATCAGATTCCCGAGGCCAGCTCCTCCCGCTAAC-CGCTCAGCCAC--CTGCGGGG---------------------AGGGTAGGA-GAACCGGTTCTCGGTTTCCAAGGCAATGCACATTTAGTAGGAAAGTGTCCACCTCCAAAAGTACATCCGAAAGCAGGATGTTCTGCTAACCTTTGTACTTGGTACGGATTAGTTCTTTCGTTTATGGACAGTCACCCACCCAGGAAAGCGGCAAAAACAGCTATTTGAGTCCATTTTTCTTTAACCCAGCAGAATGGCGTATAAAGCTTACGGACTTACCA------CGAAGCATTGGTAAAATCGCGTGACCGAA
s HiC_scaffold_1 132975295 745 + 233722169 CTCtggcccgcccgccc-------------gcccgcccg-----------catGTCTGC-GCCCCTGCTCCAACGCTTTGCTCAGCGCCCAGTCCCGAGGGTCACCCTGCTGCCGCTGCGGCTGCTGGCCTTGCTGGCTCTGTTCCTTGCGGTCTGGGCTGACTGTCCTTGCCAGGAACCTGCGCTCTGCGGCCCGATCTTACACCGCCCCGATTTCGAGGTCAGAGCCTCTCACCGCTGTGGGTCTGATCCTCAAGGCTGGGAGAGAGGAGTGGAACGGAGCCCTAACCGAGAGGCGATGGGACTCTAGCACTAACCGTGACCGTTTGCCGAGGGCCTTCCTATTTACAGATTTCCTTCAGTTTGCGGAGGGGGAAACTGCCGGCGCGGAGAGGTTGAGTAACCCCTCCTACGCCTCCCGGGCTG--GAGTGCCCAGCTCTGCCGGCGAGGCTTAAACCCATGTCTCACTTTGAGGGCCAGCTCCTGTCTCTCCCTTGCCCGGCCTCCTCTCCAGGGGCAGACTAGGTATAAAACCCAAAGGTGGGATGATTCACTTCGTGGTTTC--AGCGAATGAGGGCTTTGTATGGAAGAGACAg-----------------------agaatgttttatc--tttttaaaagtgtaGCTATTGAGCTCTTTCCTTCATGGTGCCTCA-GAACCAAGAAGAGTGGAAAAAATAGATCTTTCAGTAAATTTTCCTTCTaccta----aacagtttataaggctT-CTGGCTTATAAACCTTCTGAAGCTGTATTAGAGCTACTTAACTGAA

a score=4458
s chr3           146453564 160 + 160039680 CTCCACCCTTTGCTGAGGTCTCACTCATGAG-------------TTCTGGCCACATTCATCCAAACTCGTCCCCTTCGGTGGTTCCAGTGTGGGTCCCTCTTTAATCCATTCCTCATTTCAGCACAAGGGAATTTTCTAGGATGCATTCCTTTTCCTTTGAAAAAATACTTGT
s HiC_scaffold_1 132978586 167 + 233722169 CTCCTCACTTTACTGAGTGCTCTGTGGTAGAGGTTGCCAGCACCTCTTGCCTGGATTCATCCAACAGCTTCCCT----GTTCTTTCAGTTTGGGGCCCTCTTTCATACATTTTTTACTTCAGCTGAAGGGATTTCTCTAAGATGCa--cagcttcttttaaaaaggtttttat

a score=53606
s chr3           146453995 2572 + 160039680 TAAAAATGGTTTTGTTCTCCCCATTTCCCTCAGGATA-----CTAACTTTTCAACAGGGCT-----GGCTT------------TCATGAATTACCCCAGATTCAACAGTCTGTGTTTTATGCTTTTTCTAAATTCTAGGTTTCTGCCAT----ACTGAACATTTAT------AGTCACTGTGTTTTTTTCTGTCTTCAGGCCTCAACA---------------CTAGCCAGTACTTC------TTCCAGGTCCATGCAACCA------CCAGTATAATACACTGGTAACCTGATGTCTTCGTATTACACTCAGTGCC--CACTGCCTGACATATGGAGGTGGTTCAAGTATCTGGATG-TCAGTATGATAGCCTCAGTTTAAGTGCCAGTGTCTACCCCTGTTTTCCTGGCAGGTCTTTGTATTTGATGTTGGACAGAAAACCTGGAAATCTTATGACTGGTCACAGATTACAACTGTGGCAGCTTTTGGAAAATATGACCCAGAACTTATGTGCTATGCTCATTCAAAAGGAGCCAGGGTAGTGCTAAAAGGTATGTTTT---------CAGCAGACACACGTCTAGCAAATGCAAAAAAAAAAAAATGTGTACTGTTTACTATAT--------------ATAGTCCTTTTTATGCCTCTTTTATTCAAAACCTTAGTTGTAGATACCACTAAATCTATTCCACAAACACAG-----TTTTAAAAAGAAATA-AGCCTACTTCTTGTTTTTGAGCAAA-TGTGATTGCCTAGTTATAGCACGCTG----ACCTTGAGTAATGGTCTACAAGCTCTGCTTCTAATTCAGGA-------TCATTTTAGCTCACAGGGACTATTTCGAAGATTAGTAAGCAATGGCTGTTATTTGG---TACTATTTCTCCACTTGGAAAGCAGATTAGAGGCTTGATATTCCAAAAT--TCATGTGTTTCAAAGACATTATGCTCTCTTTGGGAGTGGCTTTGGGAAGTAAACGGT-TTTACCTATGAAAAGTATCCATATCCATATGTAAATATGTCTGTTCCTTCCAAAGGTGACATCTCTCTGAAGAATATCATTGATCCTACCTTCAGAGCATCGTGGATAGCTCAGAAAGTTGATTTAGCCAAAGCACAGTATATGGATGGGATTAATATAGACATAGAGCAAGAAGTTAACTGCTCATCACCTGAATATGAAGCACTGACAGCTCTGGTCAAAGAAACCACAGAGAGTTTCCAACGTGAGATCGAGGGATCACAGGTAAAATAAATATTCATTTTTGTTGTTGG-------TGGTGGTTTTTAGTCAAAATATATTTACATAAATATGATTAGTGACATCTTAGTTTTATAGCAATG----GTGGAAGAGTCTCTGCACACATTTCCCAAAACCCCTTTTCTGGAGTGTTACTGTTA---------TTTAAGGTCC------TAGGTTTCTATTTATATCAAAATACAACACTGCATTTGTTCTGTCCTCTTGTCTGCAGCACTGTACACTGTGGGCAGCAAGAAGCCAGGAGGGCCTAAACTGGCTTTTACTGGTACAGAGCAGAA--AACTCAGGCACTAAAGAAGAGGTTAGTGCTAGGGAACTGTGTCACTCTCTGTAGGCTCTGTAG--TATTTGCAAAGCACTCAGGGCCCATGAGAGCCCAAAGCACTACGTCTATGGAAGCAGTCAGGACCATGTCAGTAGAGG-----------CAGGAGCATAATGACAGCAGACCTCAACACAAGTAATCTTGTCAGACAATGTGTAAGTAGCAAAGGGCAATGTGCCTCCAGAGCAGGACTGATAAACATGCATGCACATTAAAAAATTCATCACCTTAAAAATGAACAAAAGCCTATGTATACACACATATCTACATGGGAGTGTCACTCCCAGATA----TATACATGAGGCCCTTGGTACAACCTCTAG-----TGTGTACACACACACACACAAAATTACTGAGAAAATTAATTATCCCTGTTTTT------------------AAACATA------------Tgtgatgatacatgtct------ttaatcctagt-----gcttagtaggtagaggcagggagactgggag------ttcaa-ggctagcctgg----------------gctacatagtgagatgctgtctcaaaacagct---aaaACATTTAAGTAG-----ACTCACACACATTGT-------------------------------------------ccttggtatccacgtaagact--gtttccag------tgtataaaatcaaaatctgtagatgctaatgctagagtcatgtacattaaatggcaaagtatttgatatactctatgcaaaactactcatattctttaaaatctttatattactaataatacctaatacaatgtta----tatacatagctactatattgactgttgaggatataaATTTAAGAATAATAGCCACACATAGAAAATTTTACAAATATCCACAGTATAGA---AAATTAGCAAACATTTTTATGTGTACTTTGTAGAATTTATAAATGCAAAAGATCACCCTTCTATAAAGTGTGTATAATAAATATATTCTTAGTGTCTACTCTATATACATGTAATGTCCA-TCCAAGGTAGAGCACCGTAAGCTCTATAAACCAATGGTTCTGAAGCTTGCCCTGGGATCACGTACG-GTGTT-ATTTAGAATTTCCTGACATTGGTTCACTGATTGTGGGCTAGAGCTGAGGGACCTGCAGTTTTAGCATGTGCGTTGGGTG---ATTCTGAGAGAGCTGGTTGTCACATGAGACTCACTGGTCAAATTAT
s HiC_scaffold_1 132978738 2628 + 233722169 taaaaaggtttttattttctccattgcCTTCAGGATATAGGACTAACTTCTCAACAGGTCTTACGAGGCTCATGAGGATTTAATCACTGCTTACCCCTCCTCC--CAGGCTCTTTTCTACGCT------AAATTCTAGGCATGCACTATGTATACCGAATATTCATTTACACAATCACCCACATTCTCTCTGCGTCCAGGCCTTGGCATTTCCCACTGTCTTCCTGGCCtgtccttcctccctttcctggCCCGGTTAGTTATCCTTGCCACCAGGTTACACTGGCATCCTCATGTCTT-----TACCCTC-GTACTGTCAGAGCCTGGTGTACGGTGGT-----------CTGGGTGGTCAGCATGATATGCTTGATTTACATGAGAATGCTTATCCTGATTGTTCCA-CAGGTCTTTGTATTTGATGTTGGCCAGAAAACTTGGAAATCTTATGACTGGTCACAGATTACCACAGTGGCAGTGTTTGGAAAATATGACTCAGAACTCATGTGCTATGCGCATTCAAAAGGAGCCAGAGTAGTGctaaaaggtattttttttttttttaccggttgCATGCATTTAGTTAATTGGTAAATTTACCA----GTATCATTTGCTAtatccttgttttaaaaaaaatttgtttatattcatctttttttgaaatctttaatTTT------CAGTAAATTAATTTCACAAATCAAGATCTCTTTTGAAAGCTTATATAATCCATTTAATGATTTTGAGCAAAATGTGACAGGCTAATTG--GCAAACTGTCTCACTTTTAGT--TAGTTTACAAGTTCTGCCTTTAATTTGAGGATGATCTTTATTTTATCT-ATGTTGCTAATTTTAGAGATTAGTAGGCAATGGCTATTATTTTGATATGTTAATTTACTATTTGGG-----GATTAGAGGCTAG-tattccaaaataatgaaatgttttaaa-acagttTGTTCCCTTTGAAAGTGGGTTtgtaaaataaatgacattttactATAAAAAGCATATAGATACA-----AAAGATATCTATTTCTTCCATAGGAGATGTACCCTTAAAGGACATCATTGATCCCAGTTTCAGAGCATCCTGGATAGCACAGAAACTTCACTTGGCCAAAACACAATATATGGATGGAATTAATATTGACATAGAGCAGGAAGTTAATTGTTCATCGCCTGAATACAACGCATTAACAGCTTTGGTCAAAGAAACCACAGAGTCTTTCCATCATGAGATTGAGGGATCACAGgtaa---aaacattcatttttttttcttggaaattctgtattttctctatcACAATGGTTTCATG-AAGTATA-------------CGGTCTAATAGTGATGCAAAATGGAAGAATTTCAGGACATATTTcctaaa---catattttataaatttaatgttaTTAAGGAACTTTAAGGTACAAAAATTTGTTCTGCATTCACATCAGaatacaacactgagattcctcctTGCAGCAGAATACAGTGTTAGGCAGtgaaggcaggaagcatcatGAAGAGC-----CCGATTTTCACCGGT-CAGAATAGAAATAACTCTTGCA--AGAGGAGAGG-TAGTTCTGGGGAAGTGTCACACTTACTCCATGGTCTGTAAATTGCTTGGAGAGAACCCAAGGCCCAATAAAGCTCAAAGGACTGATTGTGTAGAACTTGTAAGAGCTATGACAGATGACAGTGTGCTTTTTCATTGCCATAAT-------GATTCCAGTACCAGGCATCTTGCTGGGAACTGTGC-AGTAACAAAGGATAGTGTGGCTCCAAATGACTAATCTTAAATCTGGTCACATATCAGGATGACAAGGGGTCTCAAAAAGAATA----CATATGTACATAGACA---CTA-----AGGACCCACTGCAaaaaaatattattcagaaggtTTTTGATG-AACCTAGAAATCGCTGATTATA-------ATTAAGAGCTACTAAGTTAgatagtgactttttttttttttttggtactagggatcaaactcacaacctcatggttgccagggcaggtgcttaagctgctaagctaaatccccagcctgatagTGAGATTTTTGAAAGCTGGGAACAGATCCTCAATGTCTAAcatgatgtttaaaaattatttactaaatATGTGAATAATgcctttaaataattttaaatgtggtTAAATAGggtgcacatgcacacattctctctctctctctctctctctctctctctctctctctctctctccctaacTTTCCAGGGAGAGCTTGGTTGCAAGGCCCCATGTG-AATACCAAAATCTATAGATGTTCA------AGTCCTGTACATAAAATGGCAAAG--------------TATGCAGGACC-------TTCTGTATA--CTCtacattacttataatacctaatacaatgtaaatgttatatataGTTTCTATgctgttttttaaaga-ataaagacaagaaaagtatGTAC--------------------ATGCTAAGTATAGgtacaatttaaaaagtatttttat--------------------------------------------------------ctaACTATATT----GTGTCTaagaatgataaatgtaatattcATTCTAAGATGGAGCATTATAAATAC----AACCATCAATTCCTAAACCTGTCTCAGAATCATCTGGgagtattcatttaaaatttctcaaaattgaTTCAGTAGGTCTGGGATAGAGCATAGGGAACTGCAACTTTATCAAGTGCTCTAGTTGGTCATTGTGA--------------ATATGAGGATCACTGGTAAAATAAT

a score=23823
s chr3           146456851  935 + 160039680 TGACAAAGTTTGGTAAGATAAATCGGACAAAATATAAATATTTTAACATAAAGACTCATTTTATATCTATTAG-------GTGTTTACTGGGTGCCTAATTAAGGAAAAA--CACTTGGTGGGATTTTAGACTGTTTCTAGACATTAAAATAAAAC-TTACATTTAATTGAGGTAAAAACCCATATTTTAAGATACTCATCCTTGTTGA----TCACCATTCAGAATAAAGGA---------ATAT------------------------------------------------------------------------TACCTGTTTCATTTGGCTGTTTC-----------------------CAGAAAC------------------CAGGCTTTGAGAACA--------------------------TTT---------GGAGTTGAAACCCTTCT------------------------------TCTTTACAGTGCTCTGTT---------------------------------------CCTGGTCCTTGT------GTATCCAGTTATAGACACAGGCCAGTCCAATGTAGTAACAAAACATATTTATTAGAGCTCTTCTA------CATGTATTAAGTTCTATATGCATACATTATAAGCATTTCTTTATTTTTGAGTAGAATAAGGCAAGGAAATGTTATGTAAA------------TAATATGTA----------------------------GTTTTTCCACAGGTAACCTTTGATGTAGCTTGGTCACCAAAGCGCATAGACAAAAGGTGCTATAATTACACTGGGATCGCAGATGCCTGTGACTTTCTTTTTGTGATGTCTTACGATGAGCAAAGTCAGATCTGGTCAGAATGTATTGCAGCCGCCAATGCTCCCTACAATCAGACATTAACTGGTAAGAATCCAAAAAAATGATCACTTAATTAGTAATATTTATTCCAAAACCTCAGGCACTAAGGTGTATTTTAG-TATTTCTAAATTATTTATACACTTTCTATATAAA---ACTGTGCTTTATGAATAAAATACAGTAAAA-----------TGTGTTATA------------------------------ATAAAATACAAAAATTTGAGAGCTTTAGTATTTTCAAAAATATTTAA-------TTTTACTTACC--ATATCCTTATGGGATAGTTTTATTATCATTGA-----TTCTACATTATAGATAAGATGGGACTTGCATGTGTATTTTTG
s HiC_scaffold_1 132982993 1265 + 233722169 TGAAGAGTTTTGCTGTGATAAATTGGCCAAAGTGTACACATTTTACCTAAAGTATCTCATTTATGGTAATTAATCAATGAGTGTTTACTAAGTGCCTAATTAAGGAAAAAACCCTTTAATGACATTTTAGAACATTTCTACACATTAAAATAACTCATTAACATTAGTTTAGGCAATAAC-----------AAGACTCATTTGTGTTGAATTTTTACcattcaaaatgaaagataataaaaaatatgtcatttaaatgatttattcAACATTTCAGATTGATTAATCTATAGCTGTGGTCCATAACACACCAGTTTTCTAACTGTAATATTGGGCTGAACCTACCATGTAGTATAATTATGAATCAGAGGCTTGTACTTACAACCCAGTCATGCTGTGACAACAGAAGACTTGTTTAGCCTACACAGATCTTTAATACTGTGGGTGTTTGAATTCTTTTAGTGTGCCTTTACTTTTCAGTTGTTTAGGAGCCTCACAGCACGCTATTGTCATTATACCTACTTTTTTTCAGCCAGTTATCAGCCAGCCTCTTCTTTTTTATGTAGTGTCTAAATATGTGTGTAGGCCAGTCCAATGTAGTAATAAACCA-GTTTCTTAGAACTGTTCTAGTTCTGTATGTGCCAATCTCTACATTTATGTACTATAA-CAGTTCTTTTTCCTTGGGTAGTATAAGGCAAAAGAATAT-ATGGAAAATCCATATGATATAATATGTATGTTTGATTACATTGCATGAAATTATATGTTTTCTCACAGGTAACCTTTGATGTAGCATGGTCTCCAAAGAACATAGACAGAAGATGCTATAATTACACTGGAATTGCAGATGCTTGTGACTTTCTCTTTGTGATGTCTTATGATGAACAAAGTCAGGTTTGGTCAGAATGTATTGCAGCAGCCAATGCTCCCTATAATCAGACATTATCTGGTAAGAATTC--AAAAATGATAATTT-CCTAGTAATATTAATTTTGGAACCTCAAACATCAAGATATCttttaattacattaaaattacattaatacattacat-taaatttattacattacatcattacattacattaaaattaaattacattattttatacattttctcaTTTGTGTGGCCTAAATATCTAAAAATCACTTAATTTGGAGAGTTTTAATGTttacaaaaagttttaaattttcctttaacttttctaACAACTATGCGGGATAAGTAT-TTATAATAAACCCTcttctatataagaaataaaa--gggattaaATGTTCAAGTTTG

a score=22302
s chr3           146458221 783 + 160039680 ACAGCTTGCTT-CTGTATAACAGCACAGG-CATTTTTTATCTCCACCAGTCATTAGGAAGCACACATCATATTTGTAATCATGGAACACT-TGAG-TTTCTATAAGAAATTCTGA--ATATCACTGCCACAAAGTTTAAGATTTATAGAACTTTTTTGAAGCTTTAGAATCCCAAATATGAAAT-----ATATGTTAGCAGTTAGTACCTAAATTTAGTAGGATTTCTTGAAATTTTCATTTCTCCTATATTTT---GTGTATTTTGTTTCCAATATCATCTACACTGGATATCATCTCTTATTTaaacaaaacaaaacaagacaaaaAAAGAAATCTTAGAAAGCAAGACATAGGACTTCCAGTTCTTAAGGGATGGCTTTTATGACATTATA--GAAGAAAACT--CACTTTGTATCTGAACAAATATACCTGTTTTTGCAACCTTAAGATTTGGCATGGTTGCCCCAGATTGTATGTACATATTAAGAGATATATAAGCAGAATAATTATGTGTTTTTCTACTCCTATGTGACTAGGATATATTGACTACATCAAGATGGGCATTAGCCCTAAGAAACTTGTAATGGGTGTTCCCTGGTATGGCTATGATTACATTTGCCTAAATCTCTCAAAGGTAAGAACAACTTATATTGGGTATA-----------TGTGATATTACTCCATCATATACTTTGTTCTGCTCTGAATATATGAAATCTTATTTAG-ATTTCTGA-ATGCATTTTGAGGGTAAGCtttgtttctttttaattatt------------ttttttctttttttcttttttttttttttttgct
s HiC_scaffold_1 132985351 774 + 233722169 ACAGATTACCTACTATGAAACAGGAGAGGATATTGCTTGTTTGCAGCTACCACTAGGATATTAATAGATAATTTGTAAACATGGAGCACTATGTGCTTTCTTTAAGAAATTCTGATTGTGTAACTGCCAGAAAGTTT--GATTTATAGAAATGTTTTGAAACTTTAGCATCT-GGATATTAAATCTGTCATGTCTTAGtagttaata----aaattaacatgctttcctgaaattttttctagaattagatttttgtgaatattttatgt--------atatataaataatttcaatttttat---------------------gaaaaaagtgAT-TTAGAAAGCAAGATATGAG-TTTATACTTCTTAAGGGATGACTTTTATAATACTATGTTACAGAAAATTAGTATTTTGCGTATTA-----TGTACCTGTTTTTACAAACTTA-GATTCTGAGTAGTTGCAC-AGCTTTTATGAACACATTTACAGAtatatgaagagaaaaat---atgtttttatgtccTTACCTGACTAGGATATAATGACTACATCAAGATGGGCATTAGCCCTAAAAAACTTGTAATGGGTGTTCCTTGGTACGGTTATGATTATCCCTGCCTGAACTTATCTGAGGTAAGAATAGGTCACTTGTAACATAAGTTTCTCttctattatatttttacatCCTCT--TTTATTTCGTTGGTaatatataaaactttatttagaaTTTCTGAGGTGTGGCTTGggactaaaatt--tttattttcatttagtaaAAGTGGAAGCTTTTGAATgttacacttttcttttttgtggtgct

a score=23408
s chr3           146459549 760 + 160039680 TGGCTTGTGTTCTCTA-GTTCATTTTTTCTTTTTTCTACTTATATCTTTTATTTCTAACA---GTTTTATTATTTTTCTCA-TTTGGCTTTTAACATTTGCTCAATAAT----GACACGCAAATGTTTGAATTCCTAGGATGACATTTGCACCATTACAAAGGTCCCTTTCAGGGGGGCTCCTTGTAGCGATGCTGCAGGCCATCAAGTGCCCTACAAGGTGATCATGAAGCAGGTAAATGGCTCTGTTTCTGGAAGCCAGTGGAATAAAGACCAGCAAGCTCCCTATTATAACTACAAGGTACA----TTTTCACAATTTTTGAACATTTATGCT----GTTTACATAATTTTATTATGTTGTGGTTAGGTGTGTGGCATTAACAG---CTACCAGTTTT-------------AC-TGTTTTTTACTGTTTATTTGTGTAAGCCTGTCTTTGAAGCTGTGTAATCAGTAGATTTAGTTCCCCAGAGAGCAATTCAAGTTACATTACT--AGTATAATGCTCTGCTTGGTCAGTTTCCTTTTGAAAGTT-CTAT-AAAATGTGCATATCACAAGCAGGACTTGCTTAAGAGTTGGCAATTATGTTAAGGTAATTGTTTTTGAA-AGGCTTTGGTC--AAGTAGTTTTTATGTT--------------------------TGAAAATCTTCATAT------------GAAACGCAG--AGCAGTAGATGAGTCGTGATATATGTTTATATTAAAATACCATC-TATCAAGTTTATTCTAAAAGTACAACAAATTATAGGAATGTTAAAATTTAGAGACAGAAAAATATTACACAAGGAAACAT
s HiC_scaffold_1 132986227 824 + 233722169 tagctttttttctGCATAGTCAGGTTATCTTTTTATAGC--ATACATTTTATTTCCAatgaatgtttttttattttttaaaatttggatctTATGATGTGTTTGATAATCTATAACatgaacatttttgcatttctAGGATCATGTTTGTACCATTGCAAAAGTCCCTTTCCGGGGGGCTCCTTGTAGTGATGCTGCAGGACGACAAGTGCCTTATAAGACAATCATGAAGCAAATAAATAGTTCTGTTTCTGGAAGCCAGTGGAATAAAGATCAGCAGGCTCCTTATTATAATTATAAAGTAAGAATTTCCCCccaaattataaacatttattcTGTTAGTTTTTATAACTTTGTATTTTCATAATTAGATATTTGCTGTTAAGAGATTTTATCAGTGTTCATTTAGGATATAACATATAGACTGCTATTTATGTGAGTAAAC------TTGAATCTATGTAATCAGAAGCTTTAGTTCCCTGGGGAGCAATTCAAATAATGCTAATTCAGTGCAATACTCTTTTTGCACCACTTCATTTTACATGTTGCTGTAAAAACATACACATCACAAACAGGACTTCTTTCGTAATTAACAATTATGTAATGATGATTTGCTTTGAATTGGCTGTGGGCCAAAGTAGGCTGTAAGCTCTAAAGGACTCCATTTCAAAATAGCCTGAAGATTCTGATGCATCTCTTAGGGAGGAATGCGGTTGCAAGCAGATGAATCAGCACTGAT-TTTATAATAAGAAACTATCATTTCAAAAGTATTTCATAATTGATACtaat------agtattaaaaataagatacaaaaa---attaTAGATGGAAATGT

a score=43409
s chr3           146462718 1733 + 160039680 AATTAAGAGTGAGGTATGCCATATTGAATGA--GTCCACTAAGCTGAAATACAGTGCAGCCTATTTGCTTACCATATTACTACTGCTCTTTAAAGTAGACTAATCGGGAAACTAATTCCAAGAGTGCTACCAGGGAAAAAAATATTACTGG--CTCATTCAGAGTTGCCTTTAAGCACTTTCCTA-ATGCATTTAAA-AGCAGTAAATTATTTTTCACTATAGTTCTGACCTTTTCCTTAAAACATTTTTTTCTCCTTCATTCGTTCTTTTGCCTACATCTGGTCCTTTAATTTTCTTTCTTTTCTGATAACCTGTGTTTCTGGAGAG------ACAGTGTGG----CAGGGTAGAAGGTGTG------AGACCTCAGTATGTTCATTCTCTCAGTCAGCTCTGTGCT-----------GAGTCACCTCCAGCAGCCTCTCAGAATCAATTCTGTAAGACC-AGCAAGGGGGCAGCACCTCCCTCCTCCACTGCTGTTACCTGTTCATCTGGCTGATTTATCACACACAATATTCATCTGTTGAACTTCTAGGTTGGCACACTTCCAGAAACTGTAAAGAACATTAAATAAATAAATAAATCGGGTTTTAATAGATAGTAACAGTTGTTGTTTTT--ATTTGCATTGCATTCAAGGGTTGCCCAGTGGAATATTAAGACATAATATAATGACATATTT-TATCCCAGCGCCTGCCTTG-------TTTATTCAACAAGCTTTATGTAGAGTGAAAACATAAGGATCTGAACTGTCTGTCAGCTCTGGCttgttttctggacagggtctcactggagttcaggcttgccctgaacttatgaccttctcagctcatccttgaggctgccaggtgttcatcaccaggccctgcCCAAGTCTGAGCATGTAAAAGCTCTACCGTCTACAGTGATTCAAGTGTACATCTTGGTGGCTAATAGTCGGAACAGATCAAATAAGGAATCTTAAGGTTCTTAAATAAAATACCTCTTAAGTAGAG-----------GTTAACTTGTGTAATGTTTATTGTTGCTAAAGTACCATAAGATAATATTTAGAAATATCATGTATATAACCATGAAAAATAGAGTAGTAAAATAATATGGTATAATTGTTTAAAATTTTATTGCATGCAT---TTTGAATCCTTGGATTTCAGTATTTTTCCCTTGTTGTACTGAATACTTTAAGTTTCCAATTTAATTGTTTCTGTATAGGATCCTGCTGGCCGTTTTCATCAAGTGTGGTATGATAACCCACAGAGCATCTCACTAAAGGCAGCATATGTCAAAAACTACGGCTTGCGGGGCATTGGCATGTGGAATGCAAACTGTCTTGACTACTCCGATGATGCTCTAGCCAGAGAGCAAACACAAGAAATGTGGGGAGCCTTAAAACCAAGGCTGTGATGGAGAGGGGCATCTTTTGTCAGACTATC-AGACTTGTAGGACTGACCTGTATAAGTAGATCTACC--TCTTGAAGAGATAAAAATGTATATATTTTTGTCATGTTGCCATAACTTACTTATTGGTATACTCAATTACACAGGTAAGAAATAAAGAAAATTTTCATTTGTACCTGAAAAATACATACATATCTTAGATATCCAGGAATATAAAAGGAAGAAACAAGTCAATTTACTCTATTAAATATTCCTCC--ATGTTTCAGAATTATAATTA-GAAAACTTGTTTTCAAAATT---TCATGCTCAATTTTCTCTCCTATTATTGAAATATACTGTTAAAAATCAATACAGATTTTAAAAATGTGCAA
s HiC_scaffold_1 132987781 1546 + 233722169 AATACAGAGTGAGATATATACTGGTGTGTAATAATCCACTGCACTTAAATGAGCCACAGTTTATTCATTTACCA-ATAACTATTGTTTTT-----------------------AACTCTGAGAGTACTATCATAAAGAAACATACACCTGAATTTCATTCAGAATTGCCTTTAAGAAGTTTCCCAGATATATATAAACATCAGTAAATTATGTTTAGTTACAGGTCTA--TTTTTACCTcctgtatttttttgtatttcctttactCTTTTACCTAGATCTCCTC------TTTCCTTTATTCT---GTAACCAGTAG--CTGGAGTGTTACTGACAGAGAGGTGTACAGGGTAGAAGGCATGTGTAGGAGAACCTAGTTTATA---GTTCTTATTCAGATATGTGTTAATCACCCATGGAGTCAACTCTAACAGCCTCTTAGAACAATATCTGTAACACCTAGAAAAGGAG--GTTCTTTCCTCCTCCATTGTCATTACCTTTTGATTTGGCTGATTTATTGTAAACAGAAT-CATCTATTCAGCTTCTAGCTAGGCACACTTCCAGAAACtgtaacaaaaataagaaaagtatatAAG-CTGATATTAGCAGACCAGAACAGTGATTTCTTCTTAACTTTGGCTGCATACACAG-TTACCAAAGGGAac--taacacaaaaca-aacaacaaacatatTTCCTAGTACCAACCTTGGAGGGTTTTGATTTAGTGGGGCTTGTATAGTATGGGGATTTAGGAATGTGAATT--------------------TTTC---------------------------------------------------------------------------------------------------------------AAAGCTCTAC-------AGTGATTCACGTGAACATCTTGGTTGA-AATTACTGCAGTAGATCAAGGAAAGAATCTTAGG------ACATGAGAAA-----TAAGTAGAGTATATTAGGAAGCTCATTTGTGTAATACT-AT-----CAGAAGtaccataaaa--atatttagaaa------gtatCAAATCATGGAATAAACAGCAGAAAAGTACtgtgaaacaa-------aatttttgtatcttgtatCTTTTTGAGTTACTGGAATTAAACTTTTTCCCCTCTT---ACTG--TAATTCAAATTTccattgtaatttatttt-tataggatTCTGCTGGCCGTTTTCATCAAGTGTGGTATGATAACCCCCAGAGCATTTCTTTAAAGGCAGCATATATACAAAACTATGGCTTACGAGGCATTGGGATGTGGAATGCAAACTGTCTTGACTACTCTGGAGATGCTGAAGCCAAACAGCAAACTGAAGAAATGTGGGAAGCCTTAAAGCCAAAGTTATGACAGAGATGAAGATCTTCTATCAAACTATTAAGATATAGAAAACTGATCTGTATAAATAGATCTAGTAGGGTTGAAGAGATAAAAA-GTATAAGTTTTTGTCATGTTGCTGTGTATT-----TTAGTATACTCAA---------AAAGATATAAGAAAAGTGC---TTTGAATTTGAAAATTACGTTTTTATCAAAAATATTCAGATACATATAGccaagaaacaaatca---cac-atATTAAATGCTTTTTAAGACATTTGAACACTATAATTAGgaaaaaatgctttcaaaattttattatgcTAAATTT----CTCTGACATTAAAATATACCTTTATAAATCAATGATGACT---AAAATGTACAA

a score=18937
s chr3           146467553 770 + 160039680 ATGAGTTAAGAATGCTCCTGATCACCTACTAAACACCTAGTATACAAAAGTGCCTCCTGGGGAAATGAGGCTCATACCAAGGCGCTCTCTGCTCTGAAGGAAATCTAGCATCCAGTAGA-AGGCCATGTTTCGCGT----------------GTATGAAAATAACAAGAAAACGATTACCCAAGAAACGGGAAGAA----AGAGAGGGAGTTAGGGGCTTATCCATAGGTTCGTCACATTTAT---AAACGTCTGAAACTCAGGACCTTGTGCGTGCTACACAACTGTAGAAACGATTTTTAAAATGTTTTTATCTTCTTTTCATATTGTACTGACTCACTTGGTCCTTTAACCTTTAATTACTTTGAGTAAACTTTTGCCTTTGCCTGTTA-CAACATGCATCTTTTTATTGTACTTAGTT-TTCTCCATGCATTTTGTTTGTTGTCATCTAATTAATGCTAAAGAAACAGCTTAAGAAGAGTTGGTCCTGGCT-CCCTTATAGCATT-----CAAGGTTAAAATGCCAAA-CACTTTATTTCAAGATGAACGTTATAATCTGAATAGGAAAAATAGAGATTACCTTAACTTCTAATATGAGTTTCATTTTATCAGTATCCAATTTTCTCTTAAGTTGGTCAATTGCGTGCTGTACTTCAGTAATCTGGATTATAAGATAATTCTGTGTGGGACat--aaaattatttatttagt---atatttgtatatttagtataaataGCCTTATGAACATAAACTATGACGAGGT---CATTAAAA---------------TCTATTTCAGAAGACAAA--CATTGTTTTGG
s HiC_scaffold_1 132995975 755 + 233722169 ATAAGTTAAGTATGGCCAGAAGCCTTTGTTAAAGGTCTACTATACAAAAGCTGCTATGGTAGAAACAAAGTT------AAAGAGATCTCTATCCTGAGTAAAACTTAGCAACTGGTAGATAAATCTTGAttcatattaaaatgaaaaaatatatatgaaaataatcagaaa----ttaCCCAGGAGAGGAAAAAAACCGTAAATGGCACTTCAGAGGAGAA--CTTAGGTTTTTAACACTGATTAAAAATGTCTTA------------------ttctggaaaattaaaaatac------taaaac---------------------tatACTGCTTCACAAGGtccttttagttttaaaaaatgtt--ttaaatttcccaTTGGCTTGTTAATAACATGCATCTTTGCACAGAATTTAGTTACTCttcttgcattattttcattact------ttattGTAAAAGTAATAATTTT------GTCAATCCTGACTATCCTTATACTATCAACAACCAAATCAGAatactaaaatgttttatttcaatatGAAT-TTATAATCTAATTAGGAGAAATAGAAATTACCTTAACTTCTAGTATGAGTTTCATTTTATCAGTATCCAGTTTTCTCTTCAGTTGGTCAATTGCATGCTGTACTTCAGTGATTTGGATTATAAGATAATTCTATGTGAAATATAGAAAGACATTTATTTAGTAAGACATTCATGTTCATGGAAGGCATTTCTTTGCAAACATAAATCATAAAGTgatatatattaaaacaaaatatgaaatagcCTATTCTATAA-ATAAACTCATTGCTTTGG

a score=16203
s chr3           146468975  846 + 160039680 GTATGCTA--AAATAGTATCAACTAATATGGCAAGTAAATATTTTAGCCTAGCTAGGTTTTTTATATTAAATTTACCTAAAATCGTAAACATTCACTATTTCATCATGTCTACAATGACGTCATTATCATAATTAACAGATTTTTAACTCTTTTGGGTATGCGAGATCAGTCTAATAAAAAGCAAAGTGTTAAGTGGTTCCTGGGTTTATTCCTTTATTTTTTGCCTATTAAATTATGTGGTAGAATTATACAATAAAAGATAATCTTGTCTGTGGTGTAAGAGTCAAGACTATCTCAAAAAATGATTTGATCAAAATTACATA--TAATTTAAAAAGTTCTTTAGAATATTCTAAGTTCTGTGGGTGCTTAAAGCCCTCTCATCA---------------------CAGGACTACAGTGGGC---------TCCACACTTTACTCTAGTTGTCAGGTATTTATCTCTTTGTAAT------------------------------------GGTAA----------------------------TTTGCC-----------------------TAAGTCAGC-CAGAGCATTCCTGCAGCCAGAGCATTGTTACTGATTCAGAGTTCTGCTTAGTTGACCTC-CACCAAGGTAAAGGAAAGA-TTTCTATATTTCATAACTTTGGGCCAGGTTTCTCTCCTATTTTAAAAACATACGAACCTACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGGAT--------------------------------------AGGACTTTTCTCGTGGAAGAGGGCACAGTTTACACAGTACCTTAGAATCTGAGATATTTGCCAAATTCCTTGGTCGCATCTTGATCTCCCTGGCTTCAAGCTGCATGAGCAGTTTTTTATAGTAAAGTTCCAAATCTTCTCGAAGTTTTGTTAAAACTTCCTCCAATGATGCTGTGACTTTCTTGGTGTCAAGGTATTTTTTCTTCCAGCTGTCAGAGGCTACAAACAAAACACAAA
s HiC_scaffold_1 132997916 1145 + 233722169 GTGTGCTACTGAACAAAATCAACTAATATG---AACAATTATTTGAGCTTATTTTGGGTGTT-ACATTTAATTTAATCCAAACagaaaacttttaaactttta------------------caCAATcagaattaatatatttttaaattttttggat-cATAGGATCAACCTAATAAGAATCACACTG--AAATTGTT---------------------TTTGCCTTGTTTATTACATGGtgggatta-atgaaaaaaactGATCT------------AAGATTCAAGA--------AAAAAT----TGATAgaaatttcataatttctttagAA------TTACAATACTTTAAATTCTGTGGGTCTTATAATCCCTAacttcaaaaaagcaaaacaaaacaaaatagcactgTAGTGGACATTGTTAACTCCCTACCTTACTTTA----TCAAGTATTTATCTCTTTGTCATACAGTCAGTCATAGAGTGGCCCCATCCTAACACACTGGTAGGAGAGGAGACTGTCTACTGCATACTTCTTTTGCCctataaagtttaaaattctaGTCTAAGTCAATGCATAGTATTCCTT------GGTAATTATTAGTGGTCCCGTGTCAGGTCTGGTTGACCTCATAGACAGCTAAAGGGAAAAGTTTATATATTCCATGAATAGAAGAGaggtttttctcttgttttggagATACACAGCCCTTCTTGGTACTATGTGGTAGTAGCTCTCTAGTGCTACTATGAGAAACACAGCCCTACAACGAAGCcaacagtaaaaataataagaaatatggAAAAAACCAAGGCTCTTAAAGACATCACTAATCTGTGACAGTATCTCAGCAGTACTCCTCCCATTACATGGGGTAAGGAATTTTGTTATTGTCTGAGCAAATCTAAGTCAGTGTTTTGTTGCCTGTAGCCCAAAGCATCCTGAACCCGATAATACTAATAATTATTAAGCATGtaattttaacagaaattttTTAGTAGAAGGGAAACGCGTTTA-GTAGGACCTTGGAGTCTGAAATGTTTGCCAAATTCTTTGGTTTCATCTTGATCTCCCTGGCTTCAAGTTGCATGAGCAATTTTTTATAGTAAAGTTCCAAATCTTCTCGAAGTTTTGTTAAAATCTCCTCCAATGAtgttgtgattttctttgtttcaaagtattttttcttccaaccatcacaggctacaaaaaaaaaaaaaa

a score=39702
s chr3           146475065 1680 + 160039680 ATTTACGGTCTGTAGGAAACAAGTTGAATGAC-----TGTGTTTTCTATACTGAGCAAATTGCAACCATGTAATACTTAAACTATAACAAGTGAAATCTTAAATATTAATTGTAATTCTAGTTTATGCTGTATCAACTTGTAGAACTTAGGATT--AGTTTTATTTATAGCTATAAAATCTGGGTAATAAACTTTACCATGATATCGTTTCGATTTATTTTGTTCAAATAGCTTATCAACTTTTTTTATTAGTTCTTCTCTAATATTTTCCAGATATTTTCGTTCTTCCTTTACTTGTTTCATTTGTTCAATAATCTTCTCTCCTAGAGAGATTATAACCCAGTT--ATCAATTCTGAAAAGCTAAAAGATGTTTCATATTCCAAAAGACAGAGCTAAAACCTTAAAGTGTGTAAACAGCAAGAATAAAATATACTCAAACCATGTTTTTCTTTCTGCTCTTA-CCACCATGGAGAACATGGAGGAGACATTTTGA--TTTGCA--TGGATTTATAAAACAGCATATTTCTTCTGCATTTACATATATG-TGTAAAACTAGGTAGTCAAGTTTAAGTTATT---CTTGAAATTTTTAGTTT---------ATTTATTTTGGGCCCAAAGTTATC-ATACTTATATCTCCAATGGAAAA--------TACATGTT---TGAGAATAAAATAATATTAGTAACTAGCAAATATTAATATAATACTGTAACAAAAATTAATATAATGTAGCTTTCTGTTATAGTAAAATATGTATATCAAAATTTACCATTTAGCTAttttctttttctttttctt--tttttttttttttttttttgg-----ttttttgagacag-----ggtttctccgtata-----gccctggctgtcctggaactcattttgtagaccaggctggcctcaaacacagaaacccgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccatgcctggcCAGctattttcaatgtacaattaagtggcattaagttacaatgttgtataaccattcccaccatccatctccataactttaaaaagtactcatgagctgaaactttttggccattaaacaataattccttattAACACAGTTGACTTTGCCTCACACAGAGATATCTATATTCATGGTCTCACAAATACTTACTCTCAATTTTTAATAAAGAGGTATCAGTTAATCTTGAAGAAAC---------CCGCTGAGAAGGAAATGAAGGGAAATCAATCAGATCTGGCAGGGCAGTGCACTCCTTGTCACACACCTGTAAGCAAGCGTGAGAGTGAACAGAACCGGACAGGGGCAAGCATTCT---TTTGTCCACAAATGTTTGCTAATGCATGTCAGCAATGTC----CTTTTTATTAGAGAGTGATGAACTCCCAAGTTAACATTTGTCT------CTATAGATTATTTCTTATGTCTCA--CCTCCCATTTCACTAATACTTGGACATGTTATGAAGACA----GTATAAACAAAAGCTTTAAAATT----TCATTATCTTTC-TTCCAAATGTGATTTCTTTTCAAGAGTTCTAATGTTAGTGGCTCAATATAATAGCTTCTTAAAGTT--TTAAGATGGATACTGCTGTTTTTCACCCCGAGCCAA----------------------GAAAAATTGATGAGTCTATTGCATTTTCAAAATGTTAGTATATTGTTTTGTATCTTATTCTTATATGCTCTACATGCACTGTTTATATTTCTTCTTCATCTTTTTCTTCCGC
s HiC_scaffold_1 133002354 1658 + 233722169 ATTTACTGTAT-----AAAAGAGTTGAATAATGATTTTGAGGTTTCTATAGTGAATTTACT----CCATGTATCACTTAAACTATTACA-GTAAGTCAGCAAACATTAATTAtagctttatttta-aatgtttcaattc------CATAAAATTCCAGTTTTCTTTA--GTGACCGAATCAGTGTAATAAACTTTACCATGATATcgctttgatttcttttgttcaaatagtttttcaactttttttattAGCTCGTCTCTCATTTTTTCCAGatatcttctttcttcttttacttgtttcATTTGTTCAATAATATTTTCTCCTGAAGAGATTATAACACATTCTCATCAGTATTGAAAAGCTAAATGATGGTTCACATTCTAAAAGACGGAATATAAAGTTAAATGTCCA-AAACAGCAAGA-TAAATTTTGCCTGAGACTTGTTTTTCTTGCTGCACTTAACCATTATGGAGAATGTGGAGGAATTATTTGGAAGTCTACAACTAGATTTATAAGAgtg-----ttcctttgcatttacatttatgaGGTAAAGCTACTAGATAAAGCTCAAGTCATtatgcttacattttttatttcttttggtaagTTTATCTTGGGCTCAAGATAAACTGTACTTACATTTTACATGAGAAAGTTGTACTTACATTTTACATGAGAAATGTGTAAGATCA---------------TGATACA-TGGTGTATCAACCAttgttattctcttgtttt-----gttgtgaaatttttac-------tttctcatagaagtgtttttatattttctttattaatatctacttgtattatattaaaaatacttcTTGACTCAAAAATTGATTAGTGAGTAAATATATGCAGTGATCAACATAACACTCATATTTTTA-------TAGCCACGTATACAtaa--------------------caaattttattattttggtcgT-----------------------TTTGAagtatacagctcagtgacattaATACATGTTATTATGCAATGATCACCAACATTTGTCTCCAGAAATCTTTGATCTTCTCA--AATTGAAAATGT--GTCTATTGA-TGATAATTCCCCATTGATATATCTAATCTTACCTCCCA--GAATCATCTATACTTACAATGTCACAA-TACTTACTTTCAATTTGTAATAAAGAGATATCTGTTACTCCTGAAGAAAGAACAGGTTGTTGTGGACAGGGAAGTGAAGGGAAATCAATAAGATCTGGTAGAAGGACACGCGCCTTTTCACCTGTCTATAAACAAGCATGAAAATCAGTAAGATC-CATTAGACTACACATTCTTTGTTCATTTGTCGGTATTTGATAATGCACACCAGCAATGCCTACTTTTTCTCTTACATAGTGATGAACTATCAGTT-----TTGGTTTATAGAATTACAGATTCTCCCTCATGCTCCAATCTCTTCACTGCATTATTGTTTGAGTATTATACACAGACAcatcaaatgaacaaaa-----aaaattgaaaccattttttttctttccaaacatGATTTCTTTCCAAGATTTCTGGACTAAGTTACTTCATacgataa-tttttaaatttccctagGATGGCTA-------TTTTCATATTGATTTAATTCtgataatttatatttacttaGAAAATTGATGATTCtatcacattttcaaaattttagca----gttttacattttaatcttatatgttttatcttctatgctttcatcttttctaattttcatgcttctac

a score=17682
s chr3           146480549 1391 + 160039680 gttagctat-actaaatgtAGTATTTCTAGAATCTTAATAATGTCCTAAGTTCATACTGTGTATATTCACAAAATTCTCTCCACGTCTT-ATTAGTTCTTCAGAATAAACTGGTGATATAGTATCCATTAGCTTCTTTAGACTTTTGCTAGTCACATGAAACAGCAT--CCAAAGCCACACTGCT-AGTAACTGAGAACCGG--TGATAACAATCA----ACTATTATATACCTTGTCAACACACTCAAGAAATCTCTTCTAAAGAGCAGAAGTAATGAAATACATCCACCAGCATATTAAGTTACAAAATAGCTACTAAAGCTGACAATTAGATGATAGTACCTTAGGAACAGTGAGAACACTTAAGACAACGATCTAGAAGCTGCTGTAGGTAACATGTCCATCCCACTCATTTGGGCATA----TTATCTCTTCACAAAAGCAGAAACAAAAATCGAATCA-CCAGTGGTAATACTGATATTACAAGAAAATATTTAT---GGCAGTATAAATA-AACACTTAAATAT-TTAATCTGGAGCTCAGTTGTAATCTCT--------CATGTTGCAATGGTACATTGAAGTAAAATTGTCA---CCATACCAGTGTGGCCTGCCTTCTGCTGAGAGCTGCGTTATCCTTCTCCTCATCCTCCTCCTCATCATCATTTTTCCAAAGAAATGGACTTAAAAGAGAATAACAAATTTGAAAGACATATTAAAACTTGAT-TCGTGAGTATTAGTATCTACTATTCATATA--------TTAATGATTGTTTTGATGTTATAAAAACACAAATATAA--CTAAAATTGTTTAAAATTAATCTCAAAGCTA-----GAGGGTGGCTGTATCAATAGTCCTAAGATTTTTCCTggctaaagcagaggactgcttgagcccaggagtttaggatcaccttggtcatcataggaatacactcatatatatatatatatacacgcacacacacatatatacatataagttaTGCTGAGCTATGTTTTCTTTCAAACACATTAATGATCAAT-------------------------ATAAACTACATTTAATATGAATAGTAAAATAAGATATTACTATGG----------------------------ATCTACCACGATTGAAAATTATTAGAAATATTAA-----TCTTTAGTGAATGT----------AATTCT---CTTGCTTATACAA-------------TTGTTGCTTAA----------TTTGAAAAGA----------------------------------------CTGTAATCA------------------------------------------------------------TTAT-----------------------------------------------ATAAATCATT-------------ATAGAAAT-------------------------------------------------------------------------------------------------------------ACATCCTTTTACTTACACTCCAGAGTAGAATAGATAGAATCAACATTTGTACTAGTTACCTTTTTAGGTTCCCAAAATAATCGTTTGATTCTTCCAATGATCCCAGCAACTTGGAATTTCCAAAGTGATTTTGTGTAGGTTGGCTTT------------------CCTCAGCTGATGTTTATATTCATGCAATGGCAAATAAAATTCA-AATATTGGAAAAGTAGTAAAGCATTGTTttcttttctttttta
s HiC_scaffold_1 133007927 1729 + 233722169 GTTAGCTATCACTAAAACTAGTAATGTTAGCATCTTACAAAGGTGCTAAATTTATCGTGCAAATACTCGCAAAATTCCCCCAGTCTCTTCATCATTTCTTGAGAATAAACCGGTGAAATGGATAGTGTTAACTCTTTTGAACTACTGCAGTTAAAATTTGGTAACATAGccagagactta--gctcagtgacatagtgcctgcctggcaagcatgaggttatgagttcaatccctggtacccctccCCCCCAATTTTTT-TGGGTAACATATCTAAGGTGAAAAGTACA-----ATCTTCAATTACAAATTAACTACTGAAGCTGCCTGTTAAGTAA-------------------AGACTAATGTATAAAATAATCCAAAAACCGTTTTGGGCATCACTTT--TTCCTCTCATTCAGCCatactgtttatttattcataaaagtataaacaaaaattgggaCAATCATTGACAATATTGatattagaaaaatgtatttctttaggtGTTATAACCAGAATGCTCAGATATCTTAATCTGcagtttaatttaaatttctgtatATATTAGGCTGTAATGCcacatttaaacaaaaatttaaaaatcatacctGATTGTCCTGTCTCCTGTTAATGGTT---------------------------TGATcttcatttttccaaagaaattgACTTAAAAGA--ATAACAGATTT-AAACTCATATTAAAATATGATACCATGAATATAAACTTTCA-TGGTCATAtggaatattttgcatattttacttGATGATCTATAAATGTagttataaaactgaaaatatttaaatttattctaaaatcCACACAGGTTGGAAGCTAC-TCAATGGGC-TGAGATG---------------GGAGAATTACTAGAGTCCAGGAATTTAGGGACAGACTGGACAACAGAGGGAGAC-CCCAtctcttaaaaaatagaaa---------aagaatttagcTTGAGGCCatt----gtcatattttatttcaaactctttaatgagcAACTACAATAATTGCTACATTTGTCACAATTAGCTACATTTGTCACAAGTAATGCAAtcatatttcattatattgtagctaaatataaaccataatcCAACATCTataacaaagcaaaataactaGAAATCTAAGAAACCTCTTCTGTGGATAAGTGTTTATAAAATCCTGGTCTTACTtgcaaaaattataagaaatgttGTTGTCTAAACACTGTAATTTTGAATGAAATGATAGCAATGTGAAACTCAAACATATTTATTAGTTTACCTATAACCAAGAATTTACCTATGTGAGGCAATAAGACTTAGTTctaacaaatgcaaagaaattcttCTGTTATTAGGTTTCCCTAATGAGAAAAAtatcacaacaaaaataaaattaataataaattatcCCTATTATATTGGATAAAAATGTTAGTATATTACAATAAAGATGAGAATcagaataattttcatttaaaaacattactAATTCAGTTGTATCTTTAATTAAAAACTTCTTATAACAGTTCTCTGGATGCCACATCcctttttttataatttagctTATGACATATAGAATCAACATCTATGCTAATTACCTTTTTTGATTGTGAAAATAATCATCTGAATCTTCCAACAATGCTGGCAACTTAGAATTTTCAATGTGATTGTTTGCATTCTGGCTTTTGTTGGGAGTAGCTTTTCTCTTAACTGATGCTGATGTTCACAT-ATAGCAAATAAAGTTCAGAAtattaaggaaataataaaaagaaaatttgttttcttatgta

a score=24678
s chr3           146487067 570 + 160039680 CCCCTCTTGAGTTGAAGCTTTCCTT------GCCTGTAATTTGTAAGGTAAGTTTGCCCAAAATTTGCAAATAGGCTTGGTTGCTCCAATTTATTATCTATAAGAAACTCTTGCCTCTCCCATTTTAGTTGAAATCACCTTCTTCCTGATTTGT------AAAGTCTCTCCATGTATTTTCCAACAAACTTGGA---TTTCCAGGTTCATCCTTTGACAAAGATACACTATCTGGTCTGTAGATTGTTCCATTAATCTCCGTAGTATCATTAATACTCTCCTGTTCATCTAAAGTAACTGT---TGATGCTGAATAAACATTTCCTAAGTGATCTATTACAGGAAGCAAATATAATTCTGGTTGAAGAGCCTAAAACATA---GGAAATTTTTTTAAAAGGTCAAAACCAACAAAATCAACTTTAAATTTTAAAATTAGTGTGAGTT--TAACATCATAGTACATACATATGGAGGAGCAAATGATTTGAGTTTCAGTTCTGATTCTTGCTTTTCCTTTACCTAGAGTTGATACATAAGaaaaaaattaaattgttgataatatttttcaattattttt--ttCTGTGCTGTTCT
s HiC_scaffold_1 133017153 579 + 233722169 CCCATACTGAACTGTAGCTTTCCTTTTAACCACTTCTGTGTTGTAAGCAAGGTTTGCC-AGCATTTACTCACAGACCTGGCTACTAAAACATACTAT-TATAA----CCTTCATTTTCCCCATTTCACTTGAAATCACCTTCTTTCTGATTCTTGCTAAAAAgttctttcaaaatgttttctaaggaactGGGAATTCTTCCAGGTTCTTCATTTGACAAAGTTAGGCTAACTGGTCTCTGGATCATTCCATCAATTTCAGCAATATCATTATTAGTTTGCTGCCCATCTAAAGTAATGGTCGATGATGCCGAATAAACGTTTCCTAAATGGTCCATTACAGGAAGCAAATATAATTCTGGTTGAAGAGCCTGAAACatataggaaaattttaaaattagtttgtaACTAAAACAG-----TGTCAGTTAAAAAATTAGTAtaagttaaaaatatcatattacatACATATGGAGGAGCAAATGATTTGAGTTTTAGTTCTGACTCTTGCTTTTCTTTCacctaga---aaaaaataag--aaagactgaagcttttacaatatttttcaattatttttacttccattctctttt

a score=21549
s chr3           146488571 512 + 160039680 TGATAAGCACTTAAGAAATGTAATTTGATAATATAGACTTTACTTAGAAGGGGAAAAAAAAGCAAGAAAACTTACCACAGCTAAATTATTTCCAATGCATTTCAGAAACAAAAATTTTTCTGCAACAGCATCTACACCAAGAAACTCCCCAAGACGCTCCCTCAGAGCTTGTAAGGTAAGCTGAGGAGATACTCTGAAATACCATGACATTGTTT-------------TAAATAGATTTGAAACATATTAATGATATAGCTTTAGTCTAGACTAATAGCTTTAGTCACCTAACACAAATGTAAATACTAATTTAATGTATTAAATATAGTTTAACATCTTATGTTTCTACACAGCCTAGAACTTTGATCATTTCCAGTAGGTAC-TTTTCAAAACAAATGATTAACAATATGTCTTTTAAAATTGTACAAATGAATGCAGGTTATAAGTATCTTTTGTACTGAAAAGGAAA-----TGTCTGTTTTGCAAATCTATATCCAAGTTTATGATTAAAACAAAACTTTgtgcac
s HiC_scaffold_1 133027065 489 + 233722169 TAATATTCATTTAAGAAACATAAGTTGAtaatctctgcttttcttttatcagaacaaaaaaataagaacactCACCACAGCTAAATTATTTCCAatgcatttcagaaataaaaatttttctgcaACAGCATCTTCACCAAGGAACTCACCAAGGCGCAATCTCAGGGCTTGTAAAGTAAGTTGAGGAGATACTCTGAAATaccatgaaattattttatactataaAAGTAAATAGGTTTTGGCTGTACTAATGAT-----------------TAGTAACTTTACTCAACTAtctcaaatataaataatgattttATATATCAGATGTAGCTTAATATAT--TGTTTCTATGTTGCCTTGCACTTTGTAGATCTT---TGgatactttttcaaaataaatgat--------tgTCTGTTAAAATTACATCAAT--ATGAAAGC--------TTTTttgtactaaaaagaaaaatgattttctatttctgtaatcCATTTccagatt--ttattaaaataaaaatttacacac

a score=18069
s chr3           146489661 559 + 160039680 TTACACAGTGCTGCTTATTAGCAGCATTTATTGACGTAGGAATGGATACATCATATGGACAGGATACTTCTCACTTACAAGATTTTTAATTTTCACAAAACATATTTCTCTG-----------------TTTTAGAAAACTTGTTTCATGACCACAAAATACTTGCCTTATAAATCCAGCAGAAATAAAGTTGTTAATAACTTCTATTGAAATAGTATTTAATTTATAGTTCCACGATCCTTCAGGGACATAAAAAACATGAAGTTCCACCAACTGAATAAGAAAAGCATCAATTAAAATTTTTCTATA--GAAAAAGAATCAATTTACTTCCTATAGAATTTTAAATTAAACACAACTAAACTATA-GAATGTATTAATTCATATAAACAAATGA-----CAAAAT--GAGAATTTGTTAAATTGACTGCTTGACATT-------TGTTTCCGTTGAAACAATGATAACCCGTTG------TTCACAGCTTA-CACACCACCCTTGATAAATGACACTCCTCTTCGTCTGGAATTCATTAAAAGTATTTCTTTCTCCCTCCCCCCTTCTt-ttcttttctctttct---ttcttccttccttt
s HiC_scaffold_1 133029241 585 + 233722169 TTACATAATCATATTTGTTAATAGCGTTCATTGAATTCTGAATGGATCcatcaaataaa----atattgttcacttataat-ttttaaattttcagaaagaat-tttctttaagaagaaaaggatttgcttttaggtattttgttacatGAATACAAAATACTTGCCTTATAAATCCAGCAGAAATAAATTTGTTAACAACTTCTATTGATATAGTATTTAACTTATAGTTCCATGATCCTTCAGGGACATAAAAAACATGAAGCTCCACCAACTGAATGAAAAAAac--cagttaaaatatttttaagacgGACAGAAATCAAT----ATCctgtataattttaa--taaataaaattgaaataaataaatacatgcagccctgtgaacaaataaaaattaaaaattaaaaaatttgttaAGTTAGTTATTTGGTACTGAGAacacattttcctgaaaatgatgtTGTACATTTGGCTTGACTCATAGATTATCTCAGTATATTTGATAAGG-----TGTTTTTTCTGTGGCCTACAGTAAGAATACTAGTTTTCTCATCAACAATCTTTATCCTTCCCACTTTCCCAGCTACTCATTCCTTT

a score=18580
s chr3           146493409 1393 + 160039680 agagctgaaaagtggtcaacgtgtgagtcaggg--tgatcttgccc---ctaaggaatttaagctgggtatgagggcatgctcggttg------agaaacactaagaagggtggtaagatcGCTTCATTG----------CTGAGCATATGGAGATACAAGAACCAGAATCACAAAATCCAATGTGACATGGGAAGCTGGGAT---CATGGTA--GACTTAGCATCCACCATTATGTCATAAA---TATTTTTTGCT----TTTTTCAAAACCAGTAATAGGCAT-GTTTTCTTACCTCTGATGAAGATGGTCGACTTGGATTGAGCGACATGTTGTCCAGTGTCTCAATGGGATAGTTATCAGGTGGAGTTTTGGATAGTTAATATATCTTTCTTCATTTAAGCAGCATTAAGTAAGTATTTAAATAGATTTTTGG----TTTAAGATAGCATTCCAGCTATTTCTGGTCTCTGATGTGTTCAAAGAGTAAAGAGAAAAACAAAAGCTTTAATAGAAACCCAAGATATAAGTTTACAAATATATATAATCTTATTATACTCATTTAAAAGGATATTATGC-AGTAAGTAGGCCAGTGGTTCTAGGA----AAAAGCACACTTTATATAGATGGCCttcccaacttataattgtgtggaagtgatagtgttcttgaattttagaattgttgtttcttcctgagctagcgacatgcggcttgatattccttggaatgctgggcagtaccagtaagccgcag--ctctgccaggtacaaggtcataaaggGGAGTGCT--------------------------------------------------------------------------------------CTTGCTGAG--------CCATAATGCATCA-------------------GTAAATCATGTTG---------------------------------------------------------------GGTTAAACATATACta---tatataatatagaaa-tatacttttaaaa------------aatttataCCAATGGCCATGGAATGATGAAAACTGTTTTCTTATGCATTTCTTCCAAGGCATAGCATAAATGTAAGCAACCATTCTAATTAAAAATACTAATCTTTAACTATATCAGGCATTATTTTTATATTATTTCCTGTGGTTTTCCTCATATAATTTATGGCAATGTATATCAACGAATGGTAAAATGT-ATACACACACACATATGATTTTTCTAAATAGAAATTTCCAAAGTTGCCAATCCCTGCTGATGCTTACACTCAGCCCGTGAAAGCTGTTTTGTAGCTAAAGGAAGAGGCAGTTCCTGTATCACAGCTTTACTCTGTCCTCCAAGTAGTAACAGCATACAAATCCAAAACTCTCCTAACCTTAATACAGCTTATATATTATATGTACACATTATATATATAAATGCGTTAATAACAATGCA--TTTAATAC-----AACTAATACT-----TAGCTCTATGAAATACTACTAGATACCACTATTGACTTTAACACTACCAAAATTAATAAAATTATTTTGTGGGATATACAATCTTTTGAATCAAATTAGattcatatattact
s HiC_scaffold_1 133031881 1494 + 233722169 agaaaggcaaagaGTCAAAAGTATGAGTTAAGGATTGATCAAGACTGCTTTGCAGAATTTAAGCTAGGTATG-GAGCACACCATATTATTTCTCATTATTACtgagaaagataataaaatcagttCATCAGAGGTCTCACTTTAGAATACTAGGGAAACTGAGCTAGTGACACAAGAA-----GTATAATTGGATAATGGGATACACAAGGTGAGGAATTAATATCTAATACT---TCatataacttgatttttattaaaacttcTCAAAAACACTGATAGGCATAGTTTTCTTACCTCTGATGAAGAAGGCCGACTGGGATTGAGTGACATACTCATCAGTGTCTACAAGTTATAATTATCAGTAGGAATTCT-GCTTGTTCTTGAAACTTTCCTCATTTAGGTAGTAT----TATATACTACAATATATTTTTGGCTTATTTAAAATAGCATTGCACTTACTGCTGGTCTCTGA----TTAAAGGACTGAAAAGCAATACAAAAGTTTAAA---AGATTCCAAATG-AAACTTATGAATGTGTACaatctt-------taataaaaaaagatatactaTAAATAAACAGGCagataattacaataaaataaacatacatCTTATACAGATGA--TTCCCATCTTA-----GTGCAAAAGCAACA-----CTtcaaattaagaatttttatcttttcttgggCTAGCAATGTATGGTTCAC----------AAAGCTGGCCAGCAGCAGTGAGACAGAGGTCCCAGTAAGTCACAAGATCCCAAAGGTAAATGGTTGATACTTAACAGTGTATCCCATTGAAAGCTCTGATATCCAGTAGGTTAGTTGATTAAATGcactttattttcagtttacaatgGATTTGTTGAGATGTAAGCCCATTCTAAATCAAGGATAAGTAAGTAACCTGGTTAATTACATTGCAATGAACTTTAGACCAGGACATATTTTACTAATTCTAAACAATTCATTTTTTCtgagtaaaaaattaaatatatagtattttatgCAACACAGAACTTATACTTTTGCAACTGGAAAGACTGAACTTACACAAATGGCTAAAGAAtgatgaaaaacattttctt----atttctt-----------tataaatgtaaA----CACTCCAAATGAAAATAGTATTCTTTAAAAGTATCAGGCaatgtttgtatatatttt----tgtttctactCAGAGTACTTATGGCAGTT-------ATGCATGATAAAGTTtcaaatatatcaatatataataaaattgaaaaaa------taaggcAGCCAA------CTTATGATTTTAATAAA-----GGAATCATCCTTAAGAATATAATAATCATCA------ACATCAC-------------------AGTAGAAACTTCTTTAGATTTCAAAGCATTGCT--CCT------GGttgatttat-----------attaaaaataatgatgatttaaacacaacaaaactttAACTCTTCTTATCTAGTACTGATTATAGCTCTACAAAATCCTATCAGGTACTGTTAATTACTTTAATGATATCAAAA-TACAAAGATTACTTC-CCAGATATACAATCTT-----CCAAATCAGTTTGACATATTACT

a score=19635
s chr3           146502992 1287 + 160039680 GGGCTTGT---TGAACAGCCCATCAT--ATAAA--AACAAGACATGCTGTGCTTTGTAGGTAAATGGGATTATACTATTGAGTCGCTTGATGCTTGTGATGAGTAGGAAAAAAACATTGCAATTCAGTTTCATTTAC--TTAGTGTCCTGAGTATGAGCCAGTATAGAACGGTTAGCAGT-------------ACGCTATTTTGAAGTGA---------TGTTTATTTCAGGTGTTTCCAG--ACTTATAAAAATCATCAGAACCTTAACCAATAGATGTTTCTCCTTTCACTGTCAT----AGGTTTCCCAGGCAGCTGCAGACTTGAAACAGTTCTGTCTGCAGAATGCTCAACATGACCCTCTGCTGACTGGAGTGTCTTCAAGTACGAATCCCTTCAGACCCCAGAAAGTCTGCTCCTTTTTGTAGTCATCT--ATCTT---GAGGTAAGTTCACACCGCCCCCTTTGATTCAAAGGA-----------------AGACACTTAGGTCTTCTTATCTGTAGCACTGACAGTGTCTGTCCCTGTGGTCCTGACTGGCATTCCAAATTCCTTGTTTT---------TGAAGGCTACTGAAA---ACTAGGTTAGAAGTCACAAAGACTAATGTTTTTATTTATATCAGAGTGCTAAATAGATGTAATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTTTGGAGATCCTAAAATGCTTTTTTTACTTCTCAAATTGAAATGTTAACAGATTTACAGTGTTTATAGCAATGGCTCTACAGGTA-TCCTGGTGGATTTGTGGATAAACTGTTGTCACTGGTGTAAGAGACCCAAGGTGTGAG-TAGCACAGCAGAGAGCTAGGGAAA-GCAATGTT--GGGGTACCTGAGTAGGC---ACACACAGC--------------GCAGGAACCCCACCTCCGTTTTTCA-----TTGA---------------GAGAGATTTCCATTTGTGTTGGCAGGGA----ACTGGAGCTGAGGATCTGCACTCTCTAATAGGGCT--ATCAGAGTGTATATTCATG--------------TCCTAGACTAAATGTCATGTGTG-------------------AAAGACCTGTTCTCCACAGATGT--TTTGGCTAATTT-AAGATG--TAATTATAGGATACTATCATTTGTAATCTTTGGAACA----TTAGTAGTATTGAATTAGGAAGCAAACTTAAGAGTGTTTTTAAAAATACAGTGTGTGTGGTGCACACCCTTATACTAACATTCTGACTTGTGAAGTCCAGGAAGCTGC-TTCCTAAAATACCTTGTTACATAG-------------------GCTTTGTAGATCTATCCGGGAGTGCACAGGAAGT---------TACACA-GCTCTTGCTAAACAGAC
s HiC_scaffold_1 133051074 1274 + 233722169 GAGCTTGCACCTAAACAGCctgtaattaataaataaacaagatgtgctat--tttgtaaataa---------------------------tgcttctaat----------aaaacatta-aat---gtcTTACTTACAAGCAATGTTTTAAG----AGCCAGTATATGAATGTTAGTCTTTAATTAGCATATGATGCATTCTTGAGGTAAGAGATGTGctatttatttcaagtttttccaGGGATTTAAGAAAACCATTAAGAACCTTACCAACTGGTATTTCCTCCTTT-CTGTTATGTGTAGGTTTCCCAGGCAGCTGCAGACTTGAAACAGTTTTGCCTGCAGAATGCTCAGCATGATCCTCTCCTGACAGGAGTATCCTCAAGTACAAATCCCTTCAGACCGCAGAAAGTCTGTTCCTTTTTGTAGTAAACTGAATTTTTGGGAGGTAAG--------------TTTAACTAAAAGAAGTAATAATAGCAGGACTAACCACTCACATCT--CTATTTGCAGCAGTTACAAGATCATT--CTATGCCTTTGTTTGGTACTCCAAATTGCCAGTCTTAAGGGAGAGTAAGGATTGATGAAAATCATTGATTCAGTAGTTGTGAA---TCAATTGTTTGTCACCACAAGACAGTTAAATAATGGGAATAA----------------GGAAGCTACTAAAGAACAGTGCT-------GCCATGTGT-----------------------------TGTT------------------------------------------------------CAGTGCTTATTGAGATGATTTTTAAGGCACTACCAATTGATTTGGGTTAATTTTGATGTTGCTGCTGTAATAGAAACCCGCTGTGGGATAATATagcaaaaaaattgagaaatataaaGCCAAGGGATATCTGAATAAGCTTGATATTCAGCATTTGGAGTGAGGAGtaagaagttttcctttttattctaatattttggGCAACAATAAAACATGAGAAACACAACTTTTTGGTGGCAAAGAGTGGACTGTACTTGAGAGGA--------CTAAAAAAGTTTCATTAAAGCATGTTTCTATGCATTAATTGGTATTTTTCAGATCATATACCAGGTGTGCACAGTCTTACTTGTCCAAAAAGACATGTGACCCAAAAATGTGCTTTGAATGATTCAAAGATGCTTATTTA---------ATCCTTTGTA---TTTAGAGTGTGACTCATTAGTACTGAAGTATGAAGCAAAC-TAATAGtg-ctttaaaaagattttgcatatgACACATACCCTT-TACTAACATTATGACTTGAAAAGTCCAGGAGACTGCTTTCCTAAAATACCTCGTTACATAGATGTACCCTCCCTAAGTAAGCTTTGTAGAT------GCAAGTATCCAGGAAGTCTCTTTAAGTACACATGGTCCcagtaaacacac

a score=46110
s chr3           146505175 3089 + 160039680 TCAAAGTATAATA-------ATGTATTATTAACCAACAAAATGGGCAGA--ATGTAAGCCATTT---TCAAAAATTAAAAAGGAAATTGTCCTTGCTCAGGTATTAGTGATAAAAAGTGTTTTAAAAAGTTAC-CTGTGTGATACTTTATC-----TTCTTTTTTCCTCCCACTAGGTTTCTCAAACCACTTTTCATGAACCAGTGAATATTCA-AGAGAACTAAATTTGAAGTCTGTACAAAAGCTTCTCTTT----AACACGTGCCATAA--TACACTATCTTCTGCTC--GTCAGTCCTTAACATCTACCTCTCTGAATTT-CATGGATTTCTGTCTCACAAGGTTTAACTATTTTATATACACTGGCTGTAGCATACAATAAAGCATC----ATACAAACCTTTGGCCTCCTTA-CTGATGTGAAATATGCTGGGTACTAATCTTTTCAA-----------------------------------------CACCAAGACTCAGGGCCTTATATT--GGCCAGGCTTCTAGGAACTTACAG--AACAACTGCGAATCTTTGTTCATAGACTAGGAGACTTGAAGTCTCTGTCCTTGTGTTATT----TATGGGAATTGTTTTAAA--------------TAGTCCACATACAGGtggagagatggcttgg------tggtaagagtacttgctaggcaatagtgatgtgagttcagaaccctgccacctgggtaagaaagctgggcatgactgcatgcctagaagcccagtgcctgggggagatggtttgctggctg--ccagtgtgggttaaaatgataagc------------------------tccatga-----aaatcc-cttcttaataa-------atTGACATTGCCCTTTGGGCTCA------------------------------------CACAGGCAACAACAAGATTCCAAAC--AAGCAGCTTTGTA-----------ATGGCATTCACGGTTATACCAAG--------AGGGTAG-CTGCTTCCATCTGGAAATA-------AGAGA-GAGTTCCATTAAAAG-----AATCAAGAACTTGAGAACTCAACACGATGCCTGAATGAA--GTAGGAAAGTAGAGGGTAACTAGGAAGGAAGGA----GCAAGAAAACAGGCTAA------------------------CTTCAGTGA--CCTGTGTAACTGC---TCCAA----------------GTCCCAGTGACCGGCCCTCCAAGACTGGCGTATTAAGTCAG-GGTTATACA------AGCCTTTTTCTAGC-CTAACAGTC-CTTTGGGAATGCAAATTAGAAAGTT----TGAATCTTCATTCCTATAAAATTATTTTCAGCTTATCTGAAATGACAGCAAGTTTTAGGACTTTAATACCTAAAAAATTTTCAGACCtaaataaaattatatttatttatatttaCTATATG--GAGTAGAAATTCACAGTACTTGGTCATTTGTTCAAATACATGATTTATAAA---ATCAAATTCCATTTTGAAAAGGGTGTTTCATTGAA----TTACCAAGTTTTTCAAGACAGGCCA-ATCCAGCAAAATTCAGTACTGCTC----CCCTAGTCCTTTATAAGTGGAATTTCCTTCGACTTGTATCCATTTCCCGTGGCTGAAAATTAAAGGGGGAAAGCAAAGACAATGAACAACTTCTGTAAGATACAAGAAACTGGCTTTCATAGATCTTCATGAATAACAGTGCTGAGACACTCTGGCTGTGTCTGAGACCCTGAACAGTCGGTCGAGAGGTCT---AGTTTCTATGTGCTGGGAGTTTGAGGTGAGGAGGTT---AAA--GTACAAAAT-------------GGAAAGGCT---------------------------GTGCTGCT-------------CCTAG--------------------------------------------------CTAGGCCTTTGGTGAGTCCA--GCAGCAGCTCTCAGGTAATGCA--GCAGAACCAC--------------TGACGGGCT-----------------------TAAGAGACTGAAGCTGCGGCAGCCCGGTGGGTCAGGGTTT---GCGATCCTTCCATTCCCAC---------------------------------------------------------------ATTACCACACCCATTTAAGGTTCTTCGGACTGCTT--------------CAAGCAAATCCTGGTTAATCGGCAGG-------------TCAAGACACTACATCAT--GTTGGTACTTTCTAGTTCATGGGGGA-------------------------------------------AGAAGCACATG-------CTAATATG--TAAGCACACAGTTAAAATGGGCTTTGGAACAGTAAGCACATACCTTGTGGACCCATTCGTACTCTCCATATTTAGAATCAAAAGTGCCCTTCTGAAGAGATCGTAATTTTAAGGTAAAACGTGGTCCGAGTTCCTGAATTCCCACTTTCTTCTCACTCTTGAATATGTATCTTCAGAGACAAAAGTTAAACCATTGAGTTCATTCAACTTCCTGTGGCAATGCTTAAAGGATTTGTTACATCAGAATATAGGTTCTTTTTTTGTTTTTGTTGTTGGttttttttttgagacagggtttctctgcatagccctggctgtcctggaactcactttgtagaccaggctggcctcaaactcagagatctgcccgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccaccgcccagcAGAATATAGGTTCTTAATGTACTTACATGACTGACAAACGTTCAAGTTAATGCATGCCTCTCACCTGTGAAACCTGAAGAAGATGTAATCTCGCTGATTGTGGAACGTGGCAACTTGTCTTCCAATAAATTGAGGATTATGAGGAAAGAGAGAAGCAAACATGCGTCCAATAGAATGGCCTAGCCGTGTGGTAAAATTATTCAGAATTATCTCAGGTACATGTTCTGTGGGGTCTTTGCCTCTTCGCTGGGGGGAAAAAGG----CCCAGTA-------AAGATAATTAGAAAAACTATACGACACAATTGTTGGGTTTAGAATTTAGACAACAtttgttttttagcacaggtctcactggctcagaacggcttagaactttttagttcaggctatcctaaaactcagtgctcctactgcctcagcttcccacgtgctgggattataggcaggaaccaccaatcttggctTTAAAAAAAACTTTAAAATGACAAAAATGTAACAGGTGGCTTATTAAAT-ACTCAAATCTTAGTATAAAAGTTTTAGGGTAATGAGGACTACTGT-TGTCAAAATGGTTTATGGTCTCACAAAATCTCAATAG--AAAACCTGCTGTCATCAGA------------TCAAATAAGTAAAATCAATGAGA----TCTTCAAGAATGTACTGATAATCTGAGATCAATATTGATCAAGGAATACGGAAGACTCACCTTAATTTCTTTACGAAGACGAACACTGCTCATTTTAAAATGAGCGGTTGGACCGTTTGGCAAATGACTCAAAATAAGTCCATCTGTTCATAAAAGTCAAGAAACACAGCAAAATGTAGCCTA
s HiC_scaffold_1 133055679 3232 + 233722169 TCAAAGAATATTGGTACAAGATGTACtgttatttacaaaaataggTAGATAATGTaaggcatttattttaaaagttaagaa----------tTTATGAAGATaatcatga----aaatgtaaagaaaatctgTACTCTTTGAAACTTTaccctaatttatttttttttccttttcagttccTCAGACCACTTTTAACCAACC-GTGactattcagaaaaaaagaaaattgaagccTGTACAAAAACTTCCCCTTTCTTAACATGTGCCATAACATACACAAACTTCTACTTTTGTCAGTCTTTAACATCTACCTCTCTGAATTTTCATGAATTTCTATTTCACGAGGGT-----ATTTTATATACACTGGTGCCAGCATACAATAAAATACTTCGTATAAAAATCTTTTGCTTTCTTAATTGGTTTGAAATACACTG----TTAATCTGTTTGGAAAACTTATGTGTTTTTAGTGTTTAAGCTTTATGTTTCTCTCACCGTGACTTTATGCCTTTTGTTTTATTAAGACTGCTAGAAAATTAAAGGCAAgcaccaggtgtgatggtgcatg----------cctgtaatcccaacacttgggtgactgaggcaggaggatcattaccaagtttgaggacaacctgggctacacataGTTTAAG-GCTGGCCTGAATAACATggcaaaactttattttaaaaaacaa-------------------------------aacaaaggttaGCTACAGATCATTCTTGTAAG------GCCCAGAGG-----------TGGCTATCCCAGTACTGGTTGTAATAA-AAGTATTCCAAATAATGTGGTACCTCTGTTCATGAGTACCAAATCAATTTCCCTATAAGGTCAACATTGAcactaaccattgaatttgattcagttgtcatccagtttggtttgtgaccagaatcatggaaagaatcaagtctgtgaactgaggtatcactgtataCTTCTTTGTGGGGCATTACCATTTATAATCTGTTATTTTTGGAATAGACGGCTCTGATCCACAAGTACAGTAACAGAAATGGGTGGAACTAAAAAGACTTAAACAGAAAAACCAGAATTTAAGATATTGTCTGAATGGAATGTAATGAAGTAAATGGGAGCAAGAAAAGAGGAACTTTGCTTTAAGTTCtgataaattattttgctttaaactTTTACCCTTCTGTAAAACTTAAGGAAATGTGAACTCAATTTTAGTTAAAATTGTGTGCCAGACACTGAGGATCTAAAATGAATCTATTATATCAGAGGTTACATGGTATTTATCCCTTCTGTATCTCTCACATACACTctgaaaatgcaaattagaaaatTAATCTGAATCTTAATTCC---AAAATTACc----------ctaaaataagataaa--ttaagAAATCTAA---CTTACAACTTCTAAActcttgataa-----tttttatttgtatttggtaCATACAGAGTAGCAATTCATGGCACTTGGATACTTGTTTAGATA----GTTCATAAAGGCACTAAACGCTATTTTGAAAAGGATGTTCTCATAAAGAATTTAccaagtt---caagacaagccttaTTCAGCAAAATTGAATACTATTTATTTCCACAGTACTTTATAAATGGAATTTTCTTCGACTTGTATCCATTTCCCGGGGctgaaaattagaaaagagaagaaaatataatgaacAACTTACTTAAGATCATAAAAACTAGCTTTTTTAGGTCTTT----------GTACTGAAAAACT------GAGTTTGAGACCTAAAATAGTT--TTAAGCCTTATTAAAGATGATGgatattacaattttaaaataaaaatgttttaaaactgtaTAAAACTGCTTAGTAGATGAGAAAGACTTTCTAAAAATCTTATAAAAAGTATATAGTACTGTTTAAAAGTATACTGCTTAGTAGATGGAAAACTTTCTATAAAAATGTTTCCTATATGATTTAAGATTATCCCCAGACTTGTATGAATCTTTTGTAGCAGTTCTTATGAAACACACAGTAGAATCACACTGGAAAAATGCATAGTGGGCCCCACCTCTAGGTGATTTAGTAGATATGAGGCCCAAGAATTTGCATTCCTAT----CAAGGTCCTAGGTGATGTTGCTAGTTCTACTTTAAGAACGTTATCACTACAAAAGATACTAATGTATGGGTGGttatttttcagtgaatttaAACTATAACGTctattcaggtttaactgcagtgctGGCACTTTATGAAAATAAGTGGATTCTGGGTTGTAGTTTGGGCATTCCTTGCCATCACTGTACTACCACACCAACAAGTTCTTTCTAGCTCAGAGGGAAGAAATTCACAAGTATACCTTAAGGTATAAATAACCCATGTTTTAAAAGCACATGGTTTTAACTTACATgcttaaaaaaattacttaaatggGTTTTCAAAGGGTAAGCACATACCTTATGGACCCATTCATACTCTCCATATTTAGAATCAAAGGTTCCTTTCTGAAGAGATCTTAATTTTAAGGTAAAACGTGGTCCCAGTTCTTGAATTCccacttttttttcacttttgaataTGTACCTTCAAAGACAAGAG---AGTTACTCATCTAGACCAATTTCCT------------------TATAATACAGTAGAAAACAGGTTCACATT--------------------------------------------------------------GAAAACATTTCATGATTCATATCAAAGTCCAATTAAGCAATT--------------------------------AAGG--------------------------------------------------------------------------ATGTTCCTCACCTATGAAATCTGAAGAAAATGTAATCCCGCTGATTGTGGAATGTAGCAACCTGTCTTCCAATAAATTGAGGAttatgaggaaaaagagaagcaaacatACGTCCAATTGAATGACCCAGCCTTGTTGTAAAATTATTCAGAATTATCTCAGGTATGTGCTCTGTTGGGTCTTTACCCcttctctagaaaaaaaaatgaaaccacagTAATACATTAAGCTAATTGGTAAAACAATAC------------------------------------------------------------CTCAGTGC-------AATTTCATAATTTATATGACAAAAAAACCCAAT---------------AGTTGCCACATGGTTTATTTAAAcaca---------------------aaagtacattttaatatG------------CAG-----TTATTACATCAGAAAGGTCCTAGAAAATATGATTTGT----ATGAGGACTACTGTCTGCCATAACAA-TCATAATCTCAAGaaaataaagtaggtaaaactagCTTTAACTGGGaataaatgtttctcaaattGGTTTGCTCTATGACACAACTTATCAAG----------TAATGTGAGATCAGTACT---------------AAAACTTACCTTAATTTCTTTTCGAAGACGAACactgctcattttaaaatgagcGGTTGGACCATTTGGCAAGTGACTTAAAATAAGTCCATCTGTTCATTAAAGTTAAG--ATGCAGCAAACTGTATCTTA

a score=51995
s chr3           146510846 4154 + 160039680 [encoded data, 4809 characters]
s HiC_scaffold_1 133059733 4425 + 233722169 [encoded data, 4809 characters]

a score=14076
s chr3           146517687 588 + 160039680 ACCAAGGGTGATCATTCACATTT------GGTTTCTGACATTACCTCTTCATCATTGGGGTCTACTGTGGTCTCGTCGTAAACGCGCTGGTTGTCAATGGTCTTGGGAACAGGCTTTGGTGGAGCCTAAGTAAGAGGGGAAACACCGAGTGTTAGAAGCAGTTTATATTAACAACTTCACATTCCTGTGGGGAAACAAGACATTCTTCAAATAACCTCAGAAC--AACCTG-TCCTTATTTCCA-----TCCACAACCACTGTTACTA-AATCCT-----AGGAATAGAGTGGGGGCAATGACACTACCCCTTAACAATCTGAGAAGACATACGTGGTAAATACAG-----------AATGAAGTGACTTAAAACTA-----------------AGACAGGAATCACAAAAATTATCC----CTGTCTAAAATAATATCTAACAGTAAAGGGAGTCAGCAGAATGGAAATAAA------AAAAGTTTAGTTAGTTGCAAATCCAGGTGACTGTTTCTGTACTTCCCGCGATCTCCTCAGAAACGTGGCAAGTCTATCCA-----GCGACCCAGTAATTCTGTTTGGGGTT----AATTTATGGAAAGAAAT----------------AAATTGTCT------------ATGTGGTG--GCCATTTGTAATGGAAACAAACATCAA
s HiC_scaffold_1 133069549 657 + 233722169 ATCAAGGATGACTATTCAAATTCACTTAAGACTTCTAACATTACCTCTTCATCATTAGGGTCTACTGTAGTTTCATCATAGACTCGTTGGTTGTCAATGGTCTTAGGTATAGGTTTTGGTGGAgcctaaataaaa--gaaaaagatagtttttaaaagcattttacatTAGTGA-TTTACAATATAGTTGGGGGAAAAACAAATCTACCACTACCTCCTAAACATAATCTGTTCCTTATTTCAACTCATTCTACTGCTATTGTTCCAACAATCCTGattgaaaaaaaaactg--------aatactGCTTTTTAATAATCTGAGAAGAGACATATAATACATATTGGAAGAATAGCTAATTAAACAGCTTAAAACTAGCTAGAAGCACTAATCCAAGTAGTTATCAAAATAATTATCcatcacagaggaaaacaaagtaagaaagcaaa------caactgaatgggaaaaaaaattacaaaagtctATATATT----------AGACTTTATTTCTGTACTTCCAGAAAGTTATTTAGAAACATAA-AAGTATATTCACTAATCTGACTTCATAATTCTACTTTGGTTTGGAGAATTTACGGTAAGTAATGGTGGGTGATAGGGTAACACTATCTTTACAAAGAAACACGTGGTATCActattaataatgaaaataaacagcaa

a score=21777
s chr3           146519053 2481 + 160039680 TAGCTTCAAGTCACAAGAGTTAAA--CCCCAAGCCTAAAGTGGG--AGTTCCCAGTTCCAACAGCAGGGAGAGCTTTCCCTGCCTCCTGAGCA-------------CACCGCGCTTACCACCTG----------CACACAAAGCACC--TAGGAAGGCACAGCTCAGGGAAGTCCAGCAACTCCATCTGAGCGAGCTACTGAG------------------AATAGGGGACGAGTTGTCACCACTATTTGCTAAGTTGGGTACAGAGTACAAAGGGAT----TTAGTACATTATTTTTATACATCTGAAATGTCTTAGAA--------GAAACCAACACAGTATCAGGAAATACTTCATAAGACAAAATACAAGGCTATAAACCTTACTTACCTTATCGCCAAGAGCCTCTCTCTCCTTTTTAAGTTTTTTCTTAGCTGCCAACTTTTCCTTT-GAGATAAAAGCAAA----CAATATTGAGAAACCAGTAGTTATTTCATAAACTCATACTGAAACTACAAGTCAGCTCTGAGAAATTACTATAACCTTTTAAAATAAGCACATGAAACTTTTTAaaggtctgcttagatagcccaggcttgcttctgactgaccatcctcctgcctcagactccttagtgttttagattacaggtgcatactcccactcacaactAGACTTATCGATTTTTCTTTAATAGCTAAAATATTGAACTACAAATGGGCAGGCTAATCAAGAAGATTCATTTGACAAAGAGCTTGCTCTTTGTTTTGCTTCCATCAAATCAACATTA--AGTCTGAACATTTAAACTTTCAGTAACTTTAATTTTTTACTATAATACTTCCAATTAA--------------TTAAACGTATGAATGAACAAGTACAT---------TTTCCCCTAGTGGATGCGTTCTAAAGATTATGGGTATAATGGTTACTTCTCTTGAAAAGCACTGAAAATAGACAGAAATGGGAGATGAGTTCTCAGGACATTTCCAATAAGGTCACCACTAGTT--------ATTCTTATAGGTTATAACCAAAACTACCTATTAAGGTCAATAGGAAGTTGCAAACATGTTCAGTTGTTACTTAGTATACACTATAATCTCCTGAAT-CTAGACAAAATGTCTGACACATTCTGTAGTGCCTACTGATCTTCAGTCCAAAAAAAAAAGGCTTTTAGGACATTCCTCCCTCAAAATTGCAAATCAagcccggcggtggtgacgcacgcctttaatcccagcacttgggaggcaaaggcaggcagatttctgagttcgaggtctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaaacaaaaAAACAAAAACCAAAAAACCTCCACAactgactgttcttccacaagtcctcagttcattcccagcaaccacatggtggctcacaaacatctgtaatgggatctgatgccctcttctggtgtgtctgaagacagctacagtgcactcatataaataaatctttaaaaaataaataaataaataaaaagaaCTCCAGTAGCGACCTAGCACTTACGAAAAGATCCAG-------CCAAGGTCC-------TCCAGTAAGAGAACACAAATATAAAATCATGTGTTAGTTGCTGTG-TATGCTGTAATA-GGGAATTTTTAAAATTGTAATTTAGACACAAATGAGCCTCATGATCCTGGGCAAGGCTTACTTACAAGTCTGTCTAGTTTTCAGTGCGAGCACAAGGCGGAAGAGAGCAAACACAGCTATGACAGACACTTCACAGTGCTGAAACTTCACCAATGGTTCCTT--GAAAGAGTCTG----------------------GGGCCACGTTTAGGACCTGGAGTTTACCACCAACGCTAGGCAGGCGGGATGCGCAAAGGCAGGGGGCGGACCCTCTGCCATCTCCGGCCAGAGGCTGGATCGTCGGTTCCAAATCCCTCGGCTTCCCAGAGAGTGCAACCCACGGAGCAGGCAAGGGCCGGATTCCCCTACGCCAAGCTCATCCGGC------AA------AAGGCTGACGCTGGGGACCCCGTAGCCA--AGCGAGGGGCTGGGGGCGcgcctccgg--------ccccgccccttcaaccccgcgcg-----cccccggccccgccccttcaaccccgcgcgcgcacgtcgccccccccccagccccgcgcgctcccggccccgcccctgcgctcgtgccccgccAACCCCGCGCGCGTACCTTCCGCTGCTGCTGTTTCCACCGCGTGAACATCAAGTGTCGCCGCTGCTTGTTCTTAATCTCCGAGATACTGAAGCCCGGGGGGAAGGCGGCCGCTTTCGCGGGCTGCACCCCGCTCTCCGCCGTCCCATCGCTCGCGGCCGCAGCCTCTTGAGGCTCTTCAGCGGCAGCTTTCCTCTTCAAGCCTCGCTTGCCGCCACCAACACTTTTCTCGCCGGCCTTCGCCATGTTGTTT--------ACGGCTGTACGGAAACGGAAGTGCTCTCTGTCTTTGACCCGGGTCATACGGTTTTACTTCCGGGGCCGCCAAGTTCC----GGAACTAGCGCTTTGCTTTATGGATTAGCTATG-----TAAGAAAGTGCCAAGgctgga
s HiC_scaffold_1 133071595 2142 + 233722169 TAACTTCAA-CCAGGGGAGCTAAAGTCTTTTATCCTAACCTGGATAATTTCCC---TTCAAAATTA---AGAGGTTTCTCTGCCTTTTAAGCATATAAAACACCATCATTACGCTTTTTGTTTAGATATGGCACCATACACAGTAATGGTATAAAGAAGCacctgggaaaaataaaacaatttcatgagTGTTACTTTTAGAGGGggaacatgagcaaagaagcaggcaAAGGGGTTTCAACATTTTATGTTAAGCAGcgtaaaaaagacagaaagatattttttgtacttt---cttatatatctgaaatatttcataaattttagaGACGTAATCACTGTAACAT----TATTTAGTATAGGAAAGTAGATGACTAAAGTTTTTATTTACCTTATCACCAAGAgcgtctctctcttttttaagttttttcttagCAGCCAACTTTTCCTAAAgggttaaaaacaaaagaacactaTTGAAAAACCACTAGTTATGTCAGGAAC--ACACTGATATTATAAAT-------GACTAATT-CTATGAACATTTTAACTGGG---------------------------AAATGGCATA------------------------------------------------------------------------------CTAAAGTAatcaaacattttt--ataattaag-----taaCTA---------AGTCAAATCAACATGACTTA----ACACA--------------CTTCACTTCTTCAAAGTCTAAACTGGCAAGGTGAGCATTTAGAATAcccttatttttaactttt-gctatAATAATTCAAGTTAAAATTATTCAAAGTGCAAAACGCACATCTAAACAAGTAAACAAGTTTTGGTTTTCTTAAACAGTTTCATCCTAATGGTCATAGTTATGCTAGTTGTTTCTCTTGGAACGCACT-CagataaacagaaaaaggaaatgagttTTTAGGTCATTCCAaaaaaa-----ccttattttttttctgatgctcatattttataatcaaaatatgcttttaaaattcgTGACAACTCACAAA---GTTAgg--attatttattataaatatgtatcttCTGTTTTCTAGACAGAGTActagataca-----------------------------aaataaaaa----------atatttttttccaataaCTTCTAACC-------------------------------CTCAGCCAT-----------------CAGGTTTTTGGTTT-------------------------------------------------GAAACC---------AAAAAACAAGTAGTCTACGAC------ACCTCTCCC-----TTATACTTGCACA---------------------------------------------------------------------TCAGATGTGT-----------TACACGGCCCTTTTAT------------------------------------GTATTTCAGTAGTTCTCTGGCACtta-gaatgaatcaagaaacagtcCAGGGTTCCAAAAATTCTAGTAAGAAGAGGCAAGTAT-----TATAGGTGAACTTCTGTAACATGCAGAAACACATGCTTTCTTCCAGTAGCAATCTAACTACAAAAGAGTACTATGACCTGAGATAAGTCGTTTTAA-------ACCTAATTTGTTGTTTGCCTCCTAT----AACAGTATGAATATAATTAC--TAGAAACTTAACAGTACTGA--CGTCAGTAAGTGTTACTGCAGGAAAAGGCTGCATTATCTGTTATGTATTGCCTGTACCACAT---GTTCCCTAAGTT---CATCAAATCTGGATA--CGGTTCGTACAACAGAGGAGTTGAGATTTTAGGGTAATTCTCACTAAGAGAA------------CAAGATTTCTAGCTTTCT--GAGTGGACGGCTCTGGGCGTTGGAAAGGAAGGGA--ACCCTTCGCCTTGACGATCAGGCTCCACTAAGTCTCCAAGGCAGA---TTGAGAATCAGGAGCCGTGAGCCAGGAGAT-----TACACTTCCTGACGAACTTTCCTGCGCACTTTGCCGCAGGTGGGAGGATCCTGGCTAAAC-------ACCCCAAGCTCTGACAACTCCCAATCCTCTTCCACGC-----CAAAGACTAGCGCATGCGCCCGCTCACC-CCGGCCCCTCGCA--TACCTTCCGCTGTTGCTGTTTCCACCGTGTGAACATTAAGTGTCGCCGCTGCTTGTTCTTAATTTCCGAAATACTGAAGCCTGGGGGGAAGGCAGTGGCTTTCGGAGGTTGGACCCCCCCTTGCGTCGCTCCATCTCCGGTGACCGTACCCTCTTCAGGCTCTTCCACAGTAGCTTTCCTTTTCAAGGTTTTCTTCCCGCTGCCGCCACTCTTTTCTCCGGTCTTCGCCATGTTGTTTGCCCCGGCGCATCTACACGGAAACGGAAATAGTTTTT-TCTTGagtcctttttcttcctttttacttcCGGGGTTATGAAGGTCCTAAAGAAAACAG-GCTGAAGCCTGTG----AGCTGCGGGCAATAAGGAAGTACCAAAGTTGAA

a score=4023
s chr3           146522930 133 + 160039680 TCCTATTGGTTAGTGATGTAACTGTTGTTAAGTTGTAGCAGAACATAATTTATGTTTGTGGCAATGCTGGTGTAAATCCACCATGATGACAGTCATATAAAATTACA----ACATTACGATTATGATACTATTCATT
s HiC_scaffold_1 161188071 118 + 233722169 TCCTATTGCCTAGTGGTGTAGCCCCT----------------ACATCAA--ATATTTGTGGCAATGCTGGTATAAGCCTACTGTGATGTCAATTATCTGAAAGTACAACACACATTATGTTTCTGGT-TTATGCATT

a score=15875
s chr3           146523015 891 + 160039680 ATGACAGTCATATAAAATTACAACATTACGATTATGA-TACTATTCATTCCTTGacaacactaaaaacaacaacaacaacaacaaACCTTGTATGTTAACTGGCAGATGTAATAGTGCTGGCTTAAATATTTGCTTTCCTACACTTT-TAATTTTTAGATTGTATTCCCATTTCCAT----TTTTGTTTCTGTAAAACAGTGTGCCATGTTACACCTGTA-CAACT-CATATGTCTCCTGTTTTATCATATCTCTTGATTAAATCAAAATACCATGCTGAGTGATTACCATATGCCACCAATATTTGTGTAAGTACACACTATGCTGTGTACACATTGATAAAATTGTGTAGTTAAAACATTCCCCAGAATGTATATATATCCATTACCAAGTAGTCCTA----GTACTTGGAAATCCATCAATG--------AGAATATATTTTCTCTAAGATTTAACCTATACATTGTGATCAGA---------CAAGAGACACAAACATTTTAAATGTAAGGTAATAAACAATAATATTTAGTTTATGCTAATTAT-------CTCGGGTCTTAGAatactcttaaaagttattgaaaactt--------tatgtggt-tataactgtcaa-----aacaagcaaaaatgtaaattagggcttataatgcttgcatatatttacgtatagtagcaataaaatcattatttaagaatttatatacattatgaaaatgactgcattttgtagcacaaaaaacaattgcaaagagtcatattgttttatggactttt----------------------agctggat-taaagctatttttgcgtagagtct-ttat-------------------tgataggaaatctttgttgaaatacatgaagaaaatctagcct----taattttgcaactagttgagaaaggaatatctaagagatattt----cagacaattattgata---tttggtactgcatcaa
s HiC_scaffold_1 133079079 914 + 233722169 ATGTCTGTTATATAAAAGTATAGTAATAGAATTATGAATAATGCATAATCCTTGATAATG------------------ATAACAAACCAC-CATGTTA-------------------CTGGTTTATGCATTTTTCATACTATACACTATAATTATT-----------CTATTTCAAAAGAATATGCTTACTGCAAAGCACCTTGCTGTCTTATATCATCATCAACTTCATACGTCTT---GTTCACAGCATCTCTTGACTGAATCAAAAGGTCATGTTGAATGGTTGACCTGTGCCATCCAGGTTTGGCTAAGAATACTCTATGATGTGTGAACCATGATAAGATCACCTATTTA-----------------TACATTTCTCTATCATTCAGTGACTTAAGACTGTATTTGGAAGTCCTCTGTTGGAGTTCTCAGAgcatattttccataaaaattaacCTAC---TTGTGATCAGATCACTCATGCCAGAGACACAAATA-TTTAAGTATCAGGCAATAAAGCATGACCTTTAGATTAGACTAgctattcttaaatttttatctcagggcatttttaaaaactattgaagATCCCCAAAGGACATGTGGTATGTATCTGTCAATATTTACTatgtagaaattaaaact-gagaaaacagtattt--atttatttaaatataatgacaataaaataattatttgatagtttaca-aagttGTG-AAATGGCTATATTTTCTCAAACAAGA---AATTGATAAGAGTGGCATTATTTTAGATATCTTTTATGTCTGGCTTATTAGAATTCAACTGGATATATAACTGCTCCTGCATTTAATCTCTTATGATGCACCCATTTTTTTCATGATATACCATTTTGGTTGATGTATGTGAAAACAGTCTGGCCTGAAACAAGTATGTGTTTGAACAAGGGAGGAATACTTAAGGGCTTTTTTCCCCTGAATATTATGAATATTCTTTGATACCGTATCAA

a score=4770
s chr3           146523199 214 + 160039680 TGTAAAACAGTGTGCCATGTTACACCTGTACAACTCATATGTCTCCTGTTTTATCATATCTCTTGATTAAATCAAAATACCATGCTGAGTGATTACCATATGCCACCAATATTTGTGTAAGTACACACTATGCTGTGTACACATTGATAAAATTGTGTAGTTAAAACATTCCCCAGAATGTATATATATCCATTACCA-AGTAGTCCTAGTACTT
s HiC_scaffold_1  31000440 211 + 233722169 TGTAAAACTGTGTGT-GTGGTATGGCAGCA-GCCTCATACATTTCCTGTTT-ACCTCATCTCTGGATTGCCTCAGGAGGCCATAGTAAATGCCTGACCTACATCATGTACTTCTGTGTAAGTAGATTCTATGTTGTTCACACAAGGACAAAACTGCGTAA-CAGGACAGCTCTTAAATCTTAGACTCATTCAGTGACATAATTGTCCATATACTT

a score=62090
s chr3           146527796 2252 + 160039680 ttcatatgTAGACCAACAATTTAACTTGTCTTGCCAGTGTGCTCCTGAAGCTACCAACAGCCTCAGAACATATTTCCTAAATATAGACAGTAGATCATTAAAACATGGAGGAAGCCCTCCTTACTCTCCATTCCTTGAACTTT-TATACACAGTTTCT---ACCTGAGTACCCTGCACTTGGTGATATATTGTTTTAATAATAATCCTTAAATCATTTCATGGGTGACTGTTCCACCCA-CCCCAACCTCCTCCACAACACTTAATGCAA-TATGCTGCAGGAAATAAG-ATTCACTACATAG-TCAGCGCCCTGACTAACTGCCTGGCTAAATGTGCTACCTGTAATTATATTTTAAATCCTAATCAGGACAGTTCTAGGAACTCTAGGTGATTAAGTCAAAATCA---ATTCAATTTGGGTTTGTAGACATTGCCTAGAGTGAATAGACTTCATCAAAGCTTGGCAAAATGCAGATTTTTTTTTTTCAGTAGGAACCAGAGTATAAAGAAATTGAAATCACCCATACGAGATACAC---------AGGCTGAATAGTTCCTGGTGAAGTGAACATTTCTAGAATAAAATT--CACT-AGAACACAGTTACTCATCTTACTTC--------------GGTTTTTTTTTTTTTTAAGGTAATAAAAAAATCACAAACATTGTCTTGCTGGAGCTTTTGCTGGAGCTGGAGAAGTCTGAACAAAGACACTAGGAACAAAGGTGTTAGGGGGAACCATTCCTCTTTCTGATCCTCATGGCATTATCTATGCAAATGGAATGCAAAGCTATTTAAAGGAATCAAGAGCTT---AACATCTAACCCTAGAAATTGTCAAAGCGCCTCCACTGTTTCATCTGAATGCTTATAAAATCCCTATATGGTGGATTTAAAGAAAGAAGTGCC---TTCATTTTTTTTTCCCCCAGTGGGAGAATGGAAGTTCAAAGATATGAAA-ATAGCACTCAGATTAAACTACAAAACATTATCTTACAACACAAACCACCGCTTTTAAT---------GATTATCATA--AACATAGTTTTGGGTCCATTTTGCTCACAGGAAATGTCTGGATGGACACA--CTCCCATGCATTTATTTGCAAGGAGCCCCC------CCCCCAACTC-------TATTTTCAGAAACAAAACACCTGAAAGTGCCACTTGGAACCTTTGAGAGAGGTGGGTGTGTGGAG-CTAGCAGCACAGCATGCAAGGACCTTATCTGCTTTG-ATTGAGCTATCTCAACCATGTATTCTGTGGTATAGATAGCATAATTTAATATAGTTCATGTAGAATTAA-----GAA-----TGTATGTGTCTTGTATAATTTTTCATTTCTGTAATTAAACCTTGGGGATTTATTTTAGGTATTCTCAATTATAGCAAAGTAGAAGATAGTTCTCTCTATGATCTCATGAGTTGAGGTAATACATTAAAATTTATTTGATTGCTATAATTACAGAATTATTGGTTAGAAGTCA-GAAGACTTGCACATTTTCTTCTAGGTTAAGCTTCTTTTTTGGGAAATCAAACAACTTTCAAATACCTGAATATGATTCTACAAGCAAGTCACCCAGAGAGACGTGTAAACTATGGACTCATAAGCATAGGTTTACCATTCGAATTGTGTCACAATCACCTTCTAG-CTTTTCTAGAATAATGTATCCTAG--TATTTTGCACA-TTGATAAAGGACACAAAGTAGATGCATTTCGTATTTTAACTCAGATCTTCAACATGAATAGTTTTCCATTCATTGTGGAACTAATGTCTGTTG-TGGACAGGTCGCAGAC-------TTGCTCTGGCTAAGGGGATGGAT----------------------------------CATGTCAGGCTTTCCTCAGAGTCATTACA--ACATGCTAAGTAC-AATA----CACAGTATTGATCTGCAGTCACTATC-------------GTCTCCCTAAATACGAAGTTCTGTTTAGTGAGTAGAATTTCTTCCAGCCATATAAACTATAAAGTAAGACTATCCCAGTCTT----CATTCCTTCATACTAAAAATATGTCTGAGCAATTAGAAGTAGACATGGCCCTTGTGAGGAAGACA--GAATCGTAAGGCAATAGAAACTCTCTCTCTGTCAGGGACTTAAAATCTAATTCAAAAGCCCAGCACACAAATGTGACAGTTGGGATCTCAA-CCAGGCATT-AATAGCAATGAAAAAGAAGAGCACTGCAGATGTCTGGGGGTT-TGTCTGCCAGTCACTGTTCAGTAAAT----------------ACAGTAGTACC---------AAGTGCATTATTAT-ATATTTAAGAACATAGGTTTCAGAGTTGTCCAGGTCTAGGTTCTGGTCCCTTCCCATGTCATTGAGCTGTGTG
s HiC_scaffold_1 133082871 2306 + 233722169 TTTGTAGGCACATCAACAATTTAATTTGTTGTGTTGTGGCGTTCACAAAGCTTGTGGCATTCACAAAACATGTGCGCTAAATATATAGGGTAGACAATTAAAATAGAGAAGCTATTTCCTTTACTCTCCATTACTTGAACTTTATATATAGAGTTTCTTCTACAGGAGTGCTCTGCATTTGGTGATATATTGTTTTAATAATAATCCTTAAATCACTTCATGGGTGACTGTTCCGTCCACCCCCGCCCTCCTCCAGAGCACTTAATGCAGTTGTGCTTCAGGAAGCAGGCATTC---AGAGAGCTCAGATCTCTGACTAACTGACTGACTCAATGTTCTACCTgtaattatattttgaattttaatcagGGCTGTTCTAGGAACTCAAGGGGATAAAGTCAAAATCAACTATTCAAGTTTGGTTTGCATAAATTGTCTAGTGTGAATAGACTTCATCAAAACTTGTCAAAATGCAGAATATTT---------------CAGAGTATCAA-AAATTCAAACCATCCATATGAAATACACTCAAGGCTGAAGGTGAATAGTTGGTGGTGAAATTAACATTCCTAAAATAAATTTTGCACTGAGTGCAAAGTTActagttttacttcttttatactgcttattttgttttgttcttcaagGTAAT-CAAGAATCACAAATATTACCTTGCTGTGGCCATTGCCATGTCTTGAGAAATTCTGAAAAAG--ACTGGTAACAGAAAT---------AACCATTTATCTTTCTGATCTTCA--GTATGATCTATGTGAACTAAAGCCACAGCTATGTAAAGATATCAAGAGCTGTGATACATCAAAcattagagattttcaaagtgttTCTAAGATATCCTCTCAGTCTTTCtaaaatttctgtaaaatagATGCAAGGTAGGGATTATTATGTTCAGTTTT-------CCActgggaaaatgaaaatttaaagagatgaaagagaACATTCAGATTAAACTACAAA--------TTGTAATTCCTAACTCTTTGCTTAATTGCTCTTTCAACTTTCAAAGTAACATGCCCTTAGGACCATATTACTTAGAGCAAATTATCAGGTGGTCACAACCTCCCATG------TCTACATggaattcacttttttttcttaactttgtgGTGTATTTTCAGATTCAAG--GTTTGAAAG----ATTTGAAACCTTTAAATGAGGCAGAATCTTGAAATTTAGAagagttaaatataaa-----tatttgtttttcatttaactattttaattcatctttctgttttg-agaAGGTACAGTTTAAAACAGTTTTGGTAAAATTAATTTAGGAAATAGTTGTATATTTTATGCGTCATTTCCCATTTCTGTAATTAAACTGGAGAGACTTAATTCAG--ACTGTCAATTGTAGCAGAGTGG---------TTTCTTAT-------TGAGTTATGACAATAAATTGAAACTTAATTCATTATTATAACTACAACATTGTTAGTCAGAGGTCaggaaaaatagtaatttttatccCAGTTTA---CTTTTCCCtgaagaataaaacattt-----------------------------aaatcatTCACAGGGATATTTAATATATGAGGTGATAAATG-AGGTTTACCATTTGAACAGATATAAAACTTTCTTCTAGTCTTCTGCAAAAAGATCTACCCTAACCCactttaaatatttgatgaatgattcc------atgtatttcatattttatctcaAGTGT--AACATGAACACTTCTGCATTTGTTCTGAAACTAACATGTAACATTAGAGAGATCTAAGTTAGGCttgttgttttatatatatatatatatatataatatatatatatatacattacattatatatatgtagTGTTTTTCTGAGGCACATTGAATTACAGCCTAAGTTTAAATAAGGCCGTAGTATTGATCCACAGACatcttcattaaaaatgaaagttttcctaAGCCTGAAATTGTGTTTAATGAATATGGCATATATTATCCATACTAACTGT----TAAGATTATTCCAGTACTTATGTATTCATTCATACTAAAATTATTTCTCAGCATTTACAGCTGCACATAGACCTCATGAGGAAGCCAAGGAATCATGAGACAATATAAGACCTCCTTCTG-CAGGAACTGAAAATCTAATTCAGATTCAAAACACACAGTCATAAGATCTTAGCTCTCAATCCAGGTATTAAATAGCACTGAAGAAGACCATTACTACAGCAGTCAGAAGATtgcatttatcaataaatggtcAGTAAGTGTGCGCTGGTAAGCCAAGGGTAATACCTGTTTTTGGAAGCTATTCATTACAATAATGAAAAACATAGGTTTTAGAGTCAGCTACATCTGGCTGCCAGTCCCAGCTCATCCCACTTGACTTTGTG

a score=77282
s chr3           146547881 4219 + 160039680 [encoded data, 4814 characters]
s HiC_scaffold_1 133099124 4580 + 233722169 [encoded data, 4814 characters]

a score=27094
s chr3           146552394 1678 + 160039680 TCAGAAGGGAAACTGGCTGGTTGTACTTTCTGAGAGTCCTGGC-GCACAAGTGGGGATTCATTCTTGTATTTTATCCCAACTAAGAAGCACTCTCAATGTTTC------ACAATAATATAGTATTCAGGGTTAAGATACATTTCCATTCTACTCAAGGC---------AAAAGAATTCCCCATGGCTCTCCATAAACCCTGCTCATCATTCCTCTTGTTgctttata-gcggtagctcaccttcctcctctggacagtctctgaagccgagtctattgctaccctcaccccctttt--acagatgaggaggcgaagcatcaggaggttagatgatttccacagacaca------ataaatggtagatccactaaaaagggatttgaaac---------gtagccccaaagtccatccctttgacctttgttctaaacATGAACATAGGAAATACAGGCCATTGGGGCTACCTTCTAAATAAAT-TTAATCACCCTTTGCTAAAAAGGAA------TGAAATCTGAGCAAATTTGATTTAGTATTTGCAGAGAGTTAACTTTACAAGGACCCACACTC-CTGCTCAAATGTGTCCCCCTTCCTGATACTTTGGCTTGCCTCAGCAGTAAAACTGGGAACCTCTCACACACTGGATTCAGCTCACTTACTGCTGAGTTCAGGGTTGGTCAGAGCTATGTGAGGGATGCT-GCTGTGGCTGAGCTATGTGAGGGATGCTACTGTGGCAGGGGGTGCGACAGAGACTCTGAGTCTCCACCCCCTCTTTAACACGCATGGTCTTGTTTTTATTTACTCACCTGCCAGGATTTTAAACAGGATTTACATCTAAGAA----GTCTCTGCCTTTACAAAAATTTTCAGAATTTCCTTCCTAGATCTTTCAGAATCTCTGACCTAGAGAAGGGA-TGGACAAGAACT-TCTGGGGTAACTCTTATTAAACACAATTCCT-------GGTCAGCTCTTGGTGTGAGATTGGCAGCATGCTACAAGAAAACTTAGTCTTCCAGTCAGTACCCAGC---------------------------ACGGGAGTCACACATTTATGAACCACCAGCGTTACAGAGAACATCAATA---TGGAACAATGCCTGGGAA---AGCATGGATTGAAGTACTAGTCACCAGGGTGCCTGATGGCGCGCTCTGTGAAGTTTATAAGGTTATGTGCTAAAATAAAAAGGATTGTGTACATTCATAAGCCCTTGTTTTTATATTTTCACTTTT-GTCAAGAGTGCACAGTTCAG-ATTTTTTTGTCC-------ACGAGTGATATATAGTCTGTTACATGTGATTTCAGTGAAATTTTGAGGTATCTTGACTTTTCTATTAAGGAACAACGGTCTTGCTTTGGACAGCAATGCCTGTTCAGGTGACCCTGCTATGTGCAGATCTCCTGTAGTCAGTCTACTTCACCTCCAATGCAAATACATGCCAACACTGATTT--CACAGAGtga-cagagattc--tgcggggccaaacctcagtcacac---tccatcatctgctaggctcatctgtgtgtttccttgtatcttctggattgaca---gacttg---gggccatttt-gcaaga----ctcctcgtctgtatcatttaaccagcattgatatttcgttccttattct-ccaaaccccaagtcgtatctcaccaccttggtcttccaccagcctggtcggctt-agtcagaatttatctgaatcccttttggtaattttccatcaactgaccctcactccactccc
s HiC_scaffold_1 133114013 1640 + 233722169 TCAGTGAAAGGATTCATTTGTTGTACTTCCCATGGGTCCTGGAAGGAGAATTAGAAACATATCCTTATGC-------------AGAAGTAGTCacagtattttcaaaatacaataatACAGTTTTCAGAGACAAGATGAATTTTCTTAATACTGAGGTCTagccaaagaaaagaattttCCATGGTTCTTCATAGATCATAAATTACATTCTTCTTACTACTTTAGATGCTTGAATTCAT-TTACTTCTCACAGCATCCTCTGAGGTAGATGCTATTATTgtcctcatttccttttttacagatgaggaagcaaCACA--AAGATGTTAAGTAAATTGCAGAAGGACATCATTAATAAATGGTG--------AAGTTCGGATTTCAGACCTGGGCAGTGTAATGCTGAAGTCTCCATTTTCAGCTGCTTTACTAAACAGGATTCTAGGTTGTACAGGCCCTTAGA-TTACTTCTTAATTCCATGTTAA------------AAAAAGGGACTCCAGTGCAACTTGAATAAATTTGATtcaacatttttagaaaattagtTCTGTAAGAGCCTAGAATCACTGTTCAAATGTGTCTCTCT--CTTATGATTTGGCTTAATCCAGTAATGAAATTAAGAATATGCCAAGCAGTGGACTCAGATCTCTTGCTATAGAGCTCAGGACTG--CAGAGTCA--------ATGATCGCTGGGGTCTGACCAC-------------CAGTGGCAGTGAGTCGGTGAGGAACCCAGTGCTACTACTCCCGCTTCAGCCAGGGTAACCTggc-----tttatttaaatattaggaTTCCTAATaggatttattttgaagaaagaggCATCTACCtttgaaaaatctttttga--------------------aaattcATTGACATAGAGAAATAAGTGGACAGCATGTGTTTAGGGCAATccttattaaatgtttttttttctaatcggTGGGCTATTAACATGAGTCTGGCAGGACACTAT--GCAAAATTATATTTCTGGCAAATATCTCACATACAATATGACCATAATTTTGCATTTACATCAGACACACACTCATTGATGTTCAATGGCATAGAG-GCAGCAATATTCTGTGACAAAATCAAGGCATCCAACCTCGACTCACACCATAGT----AGGGTATGCAATGGCTCATTGcttgaattttagaaatttacaCATAGAAACAAAAAGTACTAGGTCCTTATATAAATCCTAGCTTCCTTGTCTTTGTTGTTAGCCAAAAGTATATggtaaagaatttttttattcgCATACAACAGGAAAAATATAAT----------TGGTTTTAAT-AGATTTTGTAGTATCTGAGTTTTCAGCTTAAAAAACTgc-------ttttaaataagaaaacatgtTTATATCATTCTGATATCTGTAAAGCTTCT---TGTAAtctacttttaataaaatttaattacatgTCAACATTGATTCAGCATAGAAGGAGAAAAGATTCTTTGCTTGGCCAAACTTTAGTCAGACGTTTGAATCATTTAGCAGGTAGATTTGTGTACTCCTTTGTATAATCTAGTTTAACAAAGAACTTGGCTGAGTCATTTTAGCAAGAACTGCCCATCTTCAGTGTTACTCACC-----------------------TTCTGCCACCCCCCAGGCAGTATCTGAGCACCTTGATCT---------------GACTTGAACAAGAGTCTCCCTAAAATCCTCTTACTAATTTTTCACC-ACTGACAC---CTCCTCTCCC

a score=36829
s chr3           146563342 2760 + 160039680 CTGCTCTTCCTTATTAACCTTCA-GTCTCCCG--TCTGTTAATCTTAGGAAGCTT-----AGCTCCTGTGCCTTCTCCCTGTGTGCT-GTCTGGTTGTTTTCTTCACATCACTATGATAGTTTT--ACATCGTTATCATTATTGTTATTATTATTTTACTTTCTGCCATTACATTCTTGTTTATCATTTAAGCTCACACTAAAGTTGGATTTCTAACC--------------AGACTCTCTTGAGGTCATTAGGG--------------------------------CTCATCTTTCATGACCTTCCCTTTGCCTTTGACATTGCCCACTGTTCTTGTGAAAT---TTTATTGTCTTCTG---ATAATCTCTCCTAGCTGCCCTCATGAGTCTTTGGGTGCTCTGACTC-------AGTTCCCATTAACATACT-GTCAAACAGCGTTGGCGGGGTACCCCAAATGTCCATCTAGCTCAGCCATTTTCATTTCCCACACCCTCTCTTTAGCTGATTAAACCCATGCCATGATTTTACCTTGG-ATGGA-CAGATTAAT-----------ATATTGATAA-----TTCTTCAGCCTGGCTAC--GGAGTCAGGCTCTGTTAGACAATAGCTTCATGGGCAGAGTGTAGTCGTGTGGGCTTACGTGTA----------------CATCTAAACTGTGATGGGCCCACTTCTGCCCTTCCTTGGTTTTAATGTTAGAAG---TCAATTATTCCCAGGGAGAAAGAAACCAACATTTCTATGGAATTCT--CTCTCTTTTATTATGAGTATTAAGTGATCATCAAAAGTTACCTGTTAGC-AATACAAGTACTTTCTTGTCTTGGGTTTTCCCACAAGTTC---TGATGGCCAAATAACTAAAATCAGTAGG-TCAGAGCCACCGTAAGTGCCAGGCTCAACACAAGTTAAAAAACTAGAGATGAAGA---GTCACAGGCAGCAGAAGACCTGGGCCTTGAC--AGATTTCCTTCATGTC----TATGGAATGGGGGAGGGGGGCTGGGGGGGGCTGGGGAGGGACCTCTCTAGATTCTTTTATGTGTGTTTCTGAAATCCTTGGAATATAACTTTGCAGGTGAAATTCGAAGCTGTCTGATCAAAGTGTCTAACCTCATCTGTTTTGTTTTAAACTTGGGGCTGGAGGAGGCAAAACAAAACCAAGAAAAACAATGAATATGCCCCGGAAATCAAATCCAACAGCGTACGTTTCT-GGTCAGCAGGGGGCGCACTGTTCCTTTACTCTGGGAAGATTTTTTTCACCTAGGCAACAAGTCTTCTTTAATAATGACTACATCCTAGCAACAGGAGGAAAAAATAATGAAAAAAAAATCAATACATTTTCTCCCTCGTGGTTGCTATTTTTTAAAATAGCTATTTTTGCCAGTATAATTGAGGCGTGTTGCCATAGGACGGGATCCTTGGTTGTCTTTTTGTTGTTTCTCTG-TTCTGTCCAGTCTCTTTCTGATTGGGGGTGGCAGGGGGTGGCTTGGGTGGTGGGATGGAAGGCTGTGAGGGTGTTAAAAGCTGTAATGGGGGCTGG-GGCTGTGGCACAGGTCAGCATCTC-----------CTGACATAGAAACAAAGACTCTGATTT--TCGTTAAA---------------ATGGTCAAATCAGCCAGACTGGGTTGCTGTCTGTGACGACCTTTTGTTTGAGTGAATTGATTCAAGGAGACAGAAATGGGAACATGATG---TTCTCAGAGGCGGCTGGAAGGATCCTGTCTAGAAGGCCGTGGGTAGCAGCGGATTGAGAACGGGAGAAAAGGGGCC-CTCTCTTACCTGGATGCTACTT--TGATTTTGAAGAAAACATT-------ATACTCTGTATAATACTTT-------ATGCATTCCGTATTTTTATAAAGAGGAAGAGATGCAATGGATTTGAAAATC------AAGCCAGTATATTTCTACATAGCAGTTCATACAAGAGACCTAGCTTGGCTCATTAATATCTGGGC----------ATGTT-----------GGCAGTG---------CATATGTGTAC-------------CATGTGTTCATGCACAGCTATGTACATTTGTTTATATCTACTTAGCAA--------------ACATATATGCATATATGTAGAC--------------------------CCAAACCAATAATACAGAGGCAC-----------------------------------------------------------------------------------CAAAATGAAGAG---------------------------------------------------------------------------------AATTCTTTTTCAAAGGATTATAC--TTTCAGAATAATTGCTCCACTCTCTTACAGAGAACAATA-ATAGCTCACAGGCAGAAATATTAAAGATTAAAAAAAATTCTTTACTTCCTAGAATTCTTATTTGATTCAGAGAAATTTATGCCGTTTATTTCACAAGCACGTTTTCATCAAGAAAGAATTAGAAATTATGCCTCCAGTAAATCTTTTAATATACAGCCATTCTTATTCAATAATGTGTGTGATTGGATACCCTGTCAGGAATCTTCCCCTCACCCCAC----------------------TGTGAAAATA-TTGTATGAACATTTTAAGA----------GAAAAGGAAATCTAGTTTAGCACTAAGAAACCCTACATCTTCTTCACCAAAGCCCTGAAATGGCTGACTTTTTTCCATAGTAATTTGTTTTGTTTTTCTAAAAGATAGTAGGGGTGTGTTAATTTGAAAT-TGACAGCAACAGTGTCATTGTCATCATCATGaacaacaacatcatcaacaacaagagca-------tcaacagcaacaca-gcaacGATGGATTTAAAGGGCACGGAGTGGGATTAGATCTT-----GCCTGTTAATGCAGAGATTCA---CAAGGCGCTAGTGAGGT-CAAGCAGCA-----AATTCCCCTGTGGCTCGACCGTTACGCATTCCTGTTGTCAGAGATACATCACTAATTAATCCTA---CATAACCTTCCATCTCACAA--ACTGTTGCCCTTCAGATCAG-----AGGCACTAAAACAGTCTCC--------------ATCAAGCTCCCTGGCCTATTTCTACTTCCATATGATCTTTGGAAAATCCCTGCA
s HiC_scaffold_1 133121155 3064 + 233722169 CTGCTGTTCCTCCTTGGCCTTCACATCACTCAGATCAGTCCATCTTAGGGAGATTTTTTCAGTTCCAGTCTCTCCTC--TGGTTGCCagcctgtttctctcttttgtgaCACTGCCAAATTTCTGGACAATGTTAC-----------------TTTTCCTTATTACTTTTAGTTGCTTGGTTATCATTTAAACT-ACCCTCAAATTTGACTTTTACCTTTATGACAACACTGAAACTCTGTTGGGGCCACCAGGGTCTCCTAAGTAGAAAAGCCAATGGTTTAAATTCTCATCATTTTTGATTTCTCATTGGTTTATGACACTGTTGACTTCTTTTGTGAGTTATCTTCGCTGTCTTCTGTGAataatttctcc--attttcttccaaAATCTCTGAGCATTCTGTTTCCTTGAATGGTTC---TTATAatgcttatttaaaattattgataattttctccaaatttcCAT---GTTTACCccttt--attttctacattatctctttgaaTGCTTTCACCCATGAC----TTCTACTCTGACATATatcatagtgatttttttttttggtatctatAACTCCATTCCCCATCTTGTCTCCTTGACTTTATGCCTTCT--AACAATAGCATTCTAGGTAGGTTGTGTTGCAGCCATCTTACATACAGTGACCCTGACTCACTTCTCCATAATCTGACCAGGCCAATGGTACTACTTTTTAGTTTTGATGTTTGATGCATTCAATAAT-------GTAAAAGAAA----------TTTGGGactcttgctttcttttatttt---tataacgtGTTTAGCAAAAGTTACTACTTAACTACTGTAAACACTTTCCTTTCTTAGGTCTTTTCAAAAATTCAAGTGACAGTGAAAGAGCTAAAATTAGCAAAAGGAGAAAGATCTTAATTACTAGGCTCATCCTgagttaaaagaaaggaaataaagaaatgacCCAAGCAATGAGAAACCTGGGTAATGgtgaaaattttccttttgtcGTCATatgta------------------------ccaagaaagaaaattcccAG--TATTATTTACATGTTGCTAGTGTCTTTGGAATATAATGCTGCAGGTACAGTCTACAGCTATTTGCTTAAGAtgcttaa-----tttgttttgtttgaaaca-------gaaagaagtaaaacaaagcaaaacaaaacaaaa----------------------caacagcctGGGCTTCTTGGTCAGCAGGGGGAGCACTATTACTTTTCTCTGGGAAGATTTT---CACCAAGGCAACAGCTATCTTTTAATATAGACCACATCCTAGcaacaaggaggaaaaataatGATACGA---TCGATCCATTAGCTTCCTTGTggttgcaatttttaaaaatagattttttcacCTTTGTAATTGAACAGCATTTGCTTAGGCAGAGGCACTGGGctgtcttttcatcttttctgtccttcctttcAGTCACTTTGTAATTA----TAAAGATGTGTAATCCAGGACGTAGAGTTGAAAATAG-----------------GTCACGGGGGCTGTTGGCCCAGAGCCTGATTAGTATTTAGGTGCGTTTAATTGACACTAAAACAAAGATAGTGGCTTATTCATTCAATTTACATTTGCCACTACGATGAGAGAAACCAAACTGGTT--CTGTCGGAAATGACCTTTTGTTTGAGTGAATTGATTCAAAGAGATGGAAATGTGGACATGGTGTCTTTCCCAGATTGAGCTGGAGTGAAGCCTACTGAGTGG----GGGTGGCAGC--ATTGTGAGCG---GAATAGTGACCAAGCCCTCATCTGGGTTCTCCTCTGTGATCTTGAACAAAGCATTTAACTTCACTCTTTGTGCTGTGCTTCTTTTCTGataaacatcacatttttctaaagagaaaaagacaaaatggatttaaaataccttaagaaatcaaaaaatagcTGTTTAGCAATTTACATGAGAAACCTAGCTTAGCTCATATATATCTTAGCTCACACATATCTGTTGTAAATAGAAGGATAGTGCATTTATGCCATATCTGTACAtctgtacacatatatatgcagaTATACACCTAAACAGACATATTTACATCTATTTTAAAATGGAGtagtgatttacatatgtgtgtgtgtaaaaattaaagaaaaaggcataaaaaagaagacaaaaccaggcatggtgaatcacacctgcaatcccagttaCTCAGAAGACAGGTAggaagattataaattcaagcccagcctgtgctacttaatgagactatgtctcaaaataaagaataacaaaGGGCTGGAATGTAGTTCATTAGGAAgacactgggttcaatcctcagtaacatgcatgtgcacacacacacacacaagtttttTTGGAAGTGTCATATTGTTTATGATTATTTAATTCACTGCCTT----AGAATGCTATATAGTTCACATGCAGAAATACTAAAAAATCTAGGGTTATTCTGAAAATCTAAAATTGAAATTTAGT---GAGgagtttttataatttattttcccagcacatttttataaggaaagaa----agatgatgCTTTAACTAATGTTCATAGTATACACCCATCCTTACCTGAGAATTTGCCTAA----ACACTCTGACACTCATTTTTCCCTCATCTCATTTGTTCCTGGCTGGAAGCatgatatcaaaatatttttgtaagcctcttaagataaataaatgaaaatagaaaacaactgCTGCATCCAGAAAGTGTGTATTTTGCTCGTTTAGTATCTAAAGTGGCTG-CTTTTTTC---AGGAA---ATCTCCATCCCCCAAATGACAACAGA-------TAATTTAACATGTGACCATAGTTGGATTTTT----------TAAGtcacaa-attttaaacaaatagagCACATTTTGTTTTTGCCAATATATTCTTCTAT---TATAAAGtgcat---tttgatttatttcatgggCGGCTGGTTAACTCAGAGGTTCAGGGTGGTGTGCTAATGAAGtgaaagcaataaatgtaattccCATGAGGTTCAGGTTTT-CTTATTACGATCGCTGCagtcacatc----cttaatcctaaaCCATCACTTTCTTTACAGAAATCATTATTTCTCTTCAGATCTGAGTCCAGGCCACGAAACAGTTTCTGTGAACAAGAGGTAACCAAGTCCCTCACCCTACTT----TTTCATGTCACCTTGGGACAATTCATTCA

a score=85481
s chr3           146567253 4386 + 160039680 [encoded data, 4614 characters]
s HiC_scaffold_1 133127155 4062 + 233722169 [encoded data, 4614 characters]

a score=6761
s chr3           146578795 388 + 160039680 CCTAAGCTAAAAGGA--TCATTTAGTGAAAAAAAAATATAGGGGAATGTCACAGACCATATATAACCAAAGGAACTCAGGTGATGCCTGAG---------TGGGGGGGCTGAGCATTTGCA-CAGTGCCCCTGGGCTTCTTG-------TCTCCACTGTCTGTCAAACTCCAAAGTTCAGCATTCTTTACGTT--------------AGTGAAACACAACCA---------------------TCTA------------AAGCCCTCAAGTT-AGT-TTGGTACGATTACTTTAAATTTATCCCCAAAG-TGATCTCTTTAGCTTGGTCTATGGTTGATTGCCTCTGGCATCTCAAGCCTGTGCTTGGTCCATTCATCCGGATTCACAGAGGAAAAGTTGACTTGAGACTAACAGACAATGGATGATAGCTTTCCTGCGGGAGTGCGAAGGTACAGC
s HiC_scaffold_1 133139026 448 + 233722169 CTTAAACTAAGAAGAAGTCATTTAATGAGATA----TAGAGGGACATGTTGTAGAACACGTGT--CCAAAGAGAAt-agctgggctctgtgaactaaCATCTGGATTGCTGAGAATCAATAGcactctctctgtgcttcttgaAGTGTGTCTGCACAATTCTCCAGGTTCTACAGCCTAGGACTTTTACAGTTTAGCAtgaacatggaagaaaatatgacTGCAGTGCCAATACACATGAAGTTCCAGATAACGTGACCAAGCCCTAAACCTCAGTCTTGGTACCCATGTTTTAAGTTCTCCCCCAAATCTGATTGCCTTTGCTTGGCCTGTAGCTTATTGTCTTTGGTGTCACAATCCCACTCTGGGTCCAGTCACGTGGAGCCTCAGAGGAAGGGTATG-TTGATACCAATGGACAGTGAAT-ATAGCTTTTCTAGAGAGGCATGAGGGTACAGC

a score=36563
s chr3           146580814 1943 + 160039680 cagcagcCACCATGTCCTTCTGGTGTGTGTCTGCAGT-GGGCCAGTACCTTCCTTTTCTTCTCCTGCTTCTACATTCTTGTTTCTGTATAATCTGACTTTAttctttctttctttcttt-ctttctttctttctttctttctttctttctttctttctttctttctttTTGTGAGTAAGGGATGTATTGTTCTCTAGACTGAAGTGATCTGTTGGGAGACAGTTAAACCTAGTGTATAATTTTAGCTCAATAGAATCCCTCTATTTGAGCTTTCCTTACACTTGGTTGTCCTTCCTTGTATCACTGGATCA-GTTTTGACCCTCTCCACCTGGAATCATCA--------------CCGCCTTCCCATTAACAATCCCATTTCACGGGGATTATT---------ATACTA----------------------------GGGTGTTT------------TCTGTGAGACCAAAACATTG------CTCTCCAGCTTTTCGTGTACCCAAGTAGGC-AGACAGCATCCTAAATACCTGCCTCTTGTACTTGATTTTAACACGAAATCAACTCTT-CACAGCCTGTCATTGGGCCATTAGACCCTACCATCTTTGGTTTATGTTGAGATCTCAAGATAGTTATGATCCTATATTTATTCACTTCCTTT-ACTGTCTTCTGGAAATTCAGTTAAGGGCACAGCTTCAGAGGCCAAATAGACCTCTATTATACtaggcaagtgtttggagttctctaagcctccgttgacttggcagtaaaatggggaccaggacacttatcactaaaaagaactgatatgaagattaaataagaGAGCGGTTGGTGAGTGTGGATTGCACGCTTCACAGTCACTAAGCCCAGGGCCCACTCCCTGTCTGATGACTTTTGCTTGACTCTTAAGCTTTTGAACTCGGAACCCACATCCCATAGTCTATTAAGCAAACAAGTCTTGTGATTTCTTGACTCATATCATGCTTA--------GATATGATCTCC----------------------------------CTGTTGTAG----------------------------ATTAAAATTGAAAA----------------------------------------------------------------TAAA-------------------------------------------------------------------------CTGCA--------------------------------------------------------------------AGAGAACTCAAGTAAGCAGTTCGAGCATATATTAGCAGCAAGGAGCACCTGCAAAGGTGACAAGACTAAACTATAAACCAGCGGGGGAGGGCTTCATGGGGAATATGCCCATATGGCCAAAGAGTATGAAAGAGGGGGGAGGGGGAGGAGGGCACCTTTATTTTCTTCAAACAGGACAGTCAGGGTTG-CTTTGTGAGAG-ATGAAACTTAATCCACA----AGACAG-------ACCACTGAAGGTAATTAAACTGGAGGAAAATATTGTATTCTGTC---CCCTGGTGCTATT--ACTTACATATCA-----TGATTTTGATTTCTAATTCCATACATGCAGATGACTCCTATTTCTCTTGATTTGAACATAGGAAGGTAAATGTGGGCTCACAGTGCTTTTATTGGACGCTACGTTGTGCTCACTCAGAAGCCTTGAAATTATGGAGAACAGATCCAAGGCGAGATGTTCCAGTGCCAGTGTTTTCAAGGACAGAGGGTGTGGCCTTTCACCGAGTTTACTTACAGAACCCATAACGGAGATATAATTTATGAAATGCCTGGTAAATGTAGTGATTCTTTGTACAGATGAATCCTCCACCTCTTAAGGCTTGGTGTAGGCTTCGATTTAGGTCTCCAATGCAGGTCCAGCGATTTGCGGAGCCCTTTATGGAAACACACCATTTGGAATGGTCTTGGCGAGAACTGAAGTAAGACTTGGAAGTTACCCCAATGGACTTGATGTTGTAGACATGGTAAGGCAGGGAACAGTTTGAAGGAAGCTCTTGTTTCTTTTTCTGCCAGGTTTGTGCTAACAAATGTGTCTTCAACTTTTGAGCTATCCATCCTGTAAAGATGTCTAGGGATCAGGAAGAGAGAAAAAGTGAAA--GAGGT---------CATGCAGATTGATCAAGGAAAAGTCCCTAGGGAGTAGAAAGCTCCAATCACTCTGGCTCTATGCACTTGGCAATAGTAACAACACGACCACATTAGAACATAGTGGAT
s HiC_scaffold_1 133140004 2173 + 233722169 CAGCAGGGACCAAGTCCTACTTGTACTGGTC--CAGTTGGGCCAgtatcttccttttcttctc-----tctacaCTCTATATTCTACAGAGTTTGGTTTTGATTGTCTTCTTTGTCTTCACATTCTTTGAACAGGCTTGTGATACAGTCACTTTTT-------------------TAGGAGATCTATGCTTACTT------------TCGGGGGGAGGACTCTCCAatctattgtgtatttttagCTCAACTGAATTCCTTCACTTTTACTTGTCATTCATT--------CCTCTCCATACTGTTGAATTAAGTTTTGGGTTACTTCACCTTAAAT-GTCAGAATCTTGTACTTCTTGATTTTTATCTAACAATCTTGTT------AGATTATTTGTAATTAGATACTATTTGAGATTATTCTAATTATTTCTAATTAGATATTTCTAAATAGATACTCTAGGAAGGCAAAATGTCTTTAGGTCTTTTCAA-TTTTCAAGTGTGTAGGTTAGCTAAATAGCATTCAACATACCCAGTGCTTATACTTAGTTCTGACAGAAAGACAACTTTTTCTCTGCTTGTAATTGAATCATTAGGTCCAGTGAATTTTG-TTGGTATTGATATCTCAGGATAGATATTGTCCCATTCTGCCTCATTTCCTTTTATTGTCTCTTGGAATGGAAGTTAAAAGTTTAGCTTTAGAAGTCAAATAGACCTCTATAATACTAAGCAAATTATTGAAGTTCTCTAAGCCTCAGAAGAC---------AAATATGGGCT-GAATGTTTGCTAtca------------------------------------tagtaaatgctcaataaatactccCC-----CTAA-----------ATTATCGATGTGTTTACTTTTGCTAGATTATAAGCTTCTTGAAATTGGGAACTATATCTTA-ACTTTATTAAGTAATTAATTCTTGTAAGTTTTTCATTAATATAATAGCTACACACAGTGATAAGAACTCCAGCATAAGAAACCTTAAAACTAAGATTGtgagatttgttttggtttctttatgtttacatttcttcatttcattcaaATTGAAAGGTTACAATtatacttttttctcttaatctgactataattttttttggcaaatgttactcatttctaaaatttgcttttgtctctttatGCAGAATGGGTGAAgttcaaattcaaattttaccAGTACTTTTAATGTTAGCCCTGTATCAGGTTGTGTGGCAGTTATTGACCATACCTAGATATTTACTGTTCATAGATTTAAAAACTCGGGCTCAGAAAATTCAAGAGAGTGACTCAATACAATGCAATTGATCAGTGGCATCTGCAAGAATGACAAAACCTAACTATAAACCAGTGAGAAAGTATTGTAAGAATAATATGACCAAATAG--GATGAATGTAAAAGAGAGTGCTGG----------------TTTTTGCTTTACATAAGA--ATGAGGAATATCTTTgtgaaaacatgaaaattaacCTATACAATGGACAGTCTATGAACAACTGGAGTTGACTAGTCTGAAAAAGACAGTTCTCCTCTTACTACCTCTGTTCTCATTTTAGTTATGTATCAGTTTGTGTTTATAATACATAACTTCAAA---GCAGAGGA-----ATTTTCATTAATTAGAACATAAAATGGTAAGTATGGA---AAAGTTGTTTTATTTAGTGATATGTTGAATTTATGGAGAAGgttttaatatataaagaatgtgTCTAGTGATATTAGATCTATTATCAACGTTTCTGTGG-TAGTGCATGTATCCTTTCACCAAGTTTAGTTACAGTCCTCATGATACAAAACTAATTTTTGAAATGCTTGGTAAATATTCTGATTTTGGTTACAAATAAATCCCCCACTTCTGAAGGCTTGGTGTGGGCTCCGATTTAGGTCTCCAATGCATGTCCAGTGATCTTTAGTGCCCTTTTGGGAAATACACCATTTTGCATGATCTTGGTAAGAACTGAAGTAAGATTGGTGAGATATCTTAATGGCTTTGATATTGTAGATGTGGTAAGGAAGGGAGCAGTTTGAAGGAAGCTCTTGTCTCTTTCGTTGCCAGGTTTCTGTTAGCAAGTGAGTTTTCAACTGTTGAGCCATCCAGGCTGCGAAAATATCTAGGgtgcagaaggaaagagagagaaagagtgaggTTTGTATTTATACCCAGATAAGTCCCTGAAAATATTCTTAGGAGTGGAAATCATCATTCACTCCTGATAGGTGGATGTCACAAGCACAACAATAATATAAT----GGAGATAGTAGAT

a score=20582
s chr3           146583604 1148 + 160039680 TTTCTGCAGTGTTAGTTCCTGTATCTCTAGTGTCTGACA--------CCGGCTGTAGATAGTCAGTAAATTCCCTGTACTGTATACTGAAGAAAAGCAAAAAGCATGGCTGACCACAAGTTTATGTAAGACAAGCATTCATGCC--TGAAGAG----GCTGTTTATCGGCAGAACCAACACTCAGAGTGAAGAGAC-TCAAGCCACTGAAAGCTCTGATATTGTTTCAAAAGAAATTGGGGTGGAAAAAGGAAAACCAAGAGATGTCAGCTTAGAGTTAAGGGATGGTTTTCAAATAAGCTTGCGAGCTGCAAGGGAAGAGCCTGTAAGGGGAGGTGGCTTGAAAGAGAA-----AGCAGATCCAGTAGCAAAGCTATCGAGGTATTCTGATGCCAGAACCGGCTA-GAGAGCTGGTGTGTGCATGGTAGCTGTCAGGATGTACAAAC--CCAGTACAAAAGCATAAAGAAAG-----------TGAGGGGTGGAACGC-------TGACGTGATTGCTCCCTTGTGATCTCTGTTCTCACTATgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagGTGTTATGTAAGGGGCTTGAGAATGGGGAAGGATTAAGAAAGCTGTCTAGCAGATGTCAGAAATAGC---TGTGGCTTC--ATGGCCAGCAAAATCTGAA-ACTGAG----CTTCAGTTTGAAGCATGTGTAGGAAATGCGCTGTGGTAGAACTGGCAACTGCTGCCATTCCCATGAACAGGGAGATGCATACGTTGGTGCCAGAACTGTT-TCTTCCTTTTTCTCCCTTTAGCTTCCTCTCTTTCCCACGTCTCTATCCCGCATAACCAGAGTGTCTTCTCCAAGCAACCCACA--GATTCCTAC------------TGACATCCTCTTTTGTGATAGCCATTCATACCATCAGTATAAAAACTTGATTTTGCAAAATGGACGAAGTTTAGACCCTGGGCTGAGTGCAGTTCAGCGAGGTACCGGACAGGGATCTTTAAGGAACTGGAGTTGGCACACATCCGGGGCATGTAGATAAGTTTCCAGTGAAAGGTGCTTGGAATGAAGCAGCTGTAGATGTTTGGTTGTAAGACCAAGAGCTGAAAATCTAAATCAGGAGAGAATAACGAAGAGTTAAGAACTTAAGCACAAATTGAAATGCTTCCTGATAT
s HiC_scaffold_1 133142179 1097 + 233722169 TTTCTATCCTGTTAATTT-TGCATCTCTAGTGTCTGATAGGGCTTTACCAGTAGTAGGCATTCAGGAAATTGTATGta----agaaagaagacaagaaataaCTACAGCAGACAGCAAGATCATCAAAAGC-------CATGGCGATGGGGAGAGCTGGTGTTTGTAGACAGAAGTAAGTCT-ACAGTGAAGGAGCACCAAGCAAGTGAAGGCATCCATGAGGTTT---------TTAATGTGGAGAAA-------CAGGTAAT------TGAGAATCGAGAGAGGGTTTTTAGGCATATTTGTATGCTATGAGGAAGGAACATGCAGAAAG-GGAAACTCAAACGAAAACACGCAGAGGCTCAAGTGGACAA---ATCAAAATGGTTTGAAGTTAGTGTGGGCTCCAAAAAACAGAGGGTGCATTACTTCtgttggaatggaagaacagcCCAAAAAGAAGAGTGAAGACAGATGACAATGCTGGAAAGGTGGGGTGCAATCTCATGGTGGGATTTAT------TGAtctttgttctctctctgtcAATGGGTTACAG---------------------------------------------TGTTGTATAAAGGAGTTGAGAA-------GGCTTAAAATGATTGCTTGAGGGATGGCAGAAGTGGCACCTATAGCCCCCCATCTCCTCCAGAAGCCAAAGACTGAGTGGTCCCTCCTTGGATGCTTGTG----AGATACTCTATGGTTGGATTAGCAAAC-CTGTTACTCAAGTGGAGCAGCAAATGTTTGAACTGAtccctgagtttttcttttccctttggttcctctttcctcccttcttttctacATCT---TGCCCCCTAATCA-------TCTTCTAAGTAATTCAGAATGAGTTCAACAGCCATGGTATATAGCATACTGTTTTATGATGGTTTTTCATACCGTCATGAAATGAATCAGATTTTGCAAAATGGAGAAAGCTTTGTCCCTGGGCTGACTGGAGGGTGGTGAGGTGCCGGACAGGGATCTTAGCCGAGTGGGACCCGGCGCACAGCTGGGGCAGGTGGAAGAGCTCTTGGTGAAACGTAGCAGGGATGGAACAACTATAGATGTTTGGGTTGCAGACCAAGAGCTGAGAATCTAAACCAAAAAACAGTGA-----AGTTGAGAATttagaaacaaatggaaatactTCTTGATAT

a score=87529
s chr3           146586185 7826 + 160039680 [encoded data, 8913 characters]
s HiC_scaffold_1 133143791 7412 + 233722169 [encoded data, 8913 characters]

a score=55631
s chr3           146596182 4586 + 160039680 [encoded data, 4871 characters]
s HiC_scaffold_1 133154134 3972 + 233722169 [encoded data, 4871 characters]

a score=34071
s chr3           146608953 2000 + 160039680 ACAGCCTCCCATGCCTCATATTCTTTA----AATAACAATAATTTTTAATGTTGGTTAATGCCTTTAAGTTCTCCTCAGAGGAAATGGTGACTTCTCACATAGAGACTTTTAGGTAATCCCTAGCATTCTAAATGAGAGCAGCAGGAGAGGTTTCCTGGCATTCTACCCAGACgtatgtgcactgtgtgcgcattgtgtgtgcactgtacattgtttgtgcactgtgtgtgcattgtgtgtgcactgtagattgtttgtgcactgtgtgtgcattgtgtgtgcactgtACATTGTTTTCTGCTTGCTTCCATTTTTACTACCTTC----ATAACCACCTTAATGTTCAATATCCATGCTAAACA--------------GCTATTCAGTTTTACGGCTCTTTGCTCCTCTCAAACACC----------TAGCAATAAGTCTGGTGGATGCTGTCAGCTGTAGAAATGGA-GTGTTCACTTGCTAAGGCTCCAGCTC------------------------------------------------------------CAGACA----------------CTGGTCTTAATGAATA----------------------------------AATCACCA-------------TCCTCTCATTAAATGT----CTCTCCCTGCAGTCAGATGGCCCTGGCTCTGCATTGCTGAGAGTATTCTG-ACCCTATCACCAATTACCCATCTCCTCCCTGGCAGCAAACTAAAAAGGCAATTTTCAAATTGTTTCCATT--ATCACAGAGCATTTTTCTCAGAAACATCACTTTTTAAAAAATGGATATGGGAGCATGGAAATATTTCCAGTTAATACAGTCATGGAATTTTCTAGAAGAAAGTTGGTTTCCATGGTGGCCGCTATATAGTTTGGAGTTAACAGACTGGCACATGTATC-TAACTTTG-CCTTTACAAATCAAGGCAAGAAAGGCAAGCCACTCCATCTTT--GTCCATGA---------TCTGCAAG------ATATCAATCCCCACAGCTGCTGCAGGGACAGGTCATGTGTTACGGACGGGATGTAGCTTTGGCATAGGAGGTTCAAAAATTATGATCAGGAgaggttggagataggctcaggggttaagagcatatactgctcttgcagatgacctcactttaattcctcaaacccacattaggtgactcagaactgcctgtaact-ccagctcaagggacctc-acacgtctggattccatgggcacttgcaTCTGACTGTCTGTCCTCGGGGTAATCATATACCGGAAAGAAAAGAAGCCTCTTTTCCCCATGGAAGACCAGTGTCCAAAGTTCAGGCGTGATACTGCTTTCCTAAGTGTTCCGGATCTCACCTGTT---AT-AGTTGTCTCATAAAATGAAAATCGAGAAAGACTGCAGCTGGCATGCTTAACTTCACCTAGCCTTCCTCAACCAGTCGGTTATATTTTCATTACAGAATGATGAAGTGGAATTTGTCCGAACTGGCTATGGGAAAGACATGGTCAAAGTTCTCCATATTCAGAGAGATGGAAAATACCACAGCATCAAAGAGGTGGCAACTTCGGTCCAGTTGACTCTGAGGTCCAAGAAGGATTACCTACACGGTGATAATTCCGACATCATCCCTACAGACACCATCAAGAACACTGTGCACGTCCTGGCGAAGCTCAGAGGGGTATA-ATCA--CTCTTAGATGCTTGCTACTTCCTGATGCA-AATTCAATGCGAGCTCGCGTGGGGGTGGAACTTGCTTTTTTTAAGCTCTCATTTCCTTTTAACCTATTTTTGCATGTATGCCGTTTTTAAACTTTTCCTTTTTACCATAAATTTTTCAGGCTTACA-GAAAAGCTTGCTCCGTATTATTCCTTTAA------------TTTA--CTTCATTAGTTAGG-----AGGAACAGCTCCTGGGTAATTAACTTGGTACCTTAC-----ATTGGAATAATAGGCAAGCCAAGGTCACGGGAGGATTTCAGACCAAACT-TAATACATTTCTCGTGGCTTTCTTGACTCTCTATTGCTTTT------------AGAGCATGCATTTGTAGCGGAGAAGGCTGTTGTT-------GCACCACTGAACAGAACATTGATTATAAGATACTCTACTTATAGGCAAAATCTATTGTCAAATTC--TTTGTCTTGTGTTTGAGTTTTTTCTTTGC
s HiC_scaffold_1 133166289 1968 + 233722169 ATAGCCTCTCAT----CAACTTCCTCAGAGAAACAGCAGTCATCTCTGATGTGGCCTAGTACTCTTCAGCTCCCCTCAGAGAAACTAGTGACTGTGTGCAAACAGCCCTTGGTGTAGTT--GGGCAACCTAAGTGTGATTTACAGGTGAGATTCTTTGTCTCACCTCCCAGACACCCCTG----------------------------------------------------------------------------------------------------------GTCTTCTGTTTTTGATTTACTTTCATTCTTGTTATCTTCTTTCATTACCATTTTAGTGTTCAGTTTCCATCCTAAGTAAAATAATGGTTCTTGTCATTGTGCTCTG----TCTTGGGTGTTATCAAACACCAATAAAAGTCCAGTAACAAATCTTGCAGATTTACTGAG----AGAGATGGATGTGTTCACTGGTTTAGGCTCCAACTTTGAAAAagagttctgggggctggggatttagctcagcggcataagtgcctgccttgcaagcaggcagttgtgagttcgatccctggtactgataaaaacgaaaaagacaaaaaaaaaaaagttctagtaACCAATCAGCAGTTCTTACAAGTATCTTTTCATTAAAAGTGAGGATCTCCTTGCAGCGAGATGGACCTGGCTCTATATTACTAGAAGTAATCTGGATCCCATTACCAATTAC---TCTTTTTCCTGCTGGCaaatagaaaaagcaattttaaaattctttcttttgaattaatAGGCACTGTCTCCAGAA-TATCACTTTGTCCACCA-------AAGAACACAGAATTATTTCCAGATAACATATTCAAGAAATTTTATAGAAGGCAAGAAATTTATATAGTGGCCATTCTATAACCTGGACTCAATAGTCTTGAATGCAAATCCTAACTCTGTCCTTTGCTAGCTATATGCAGTAGGCAAAGTCATTTAATCTCTTCGACCCTTAGTTTCTCTTTTTGTAAAGTGAGAATATTAGTGCATTGAGCAGTTAGAGGATTAGGTTA----------GCAGGAATTAG------------------------TATGA-CAGCATAAGTT--AGCctagttca---------------------tcctggagattctATTATT---------------------------------ACTGTATGTTATTGTTATTACAAAAGTCATCCACATGTCTGTCTTTAGGGTGATCtactatatttcattttctccttgggattttcct-----------------------ttttatgtacAAATTTCCATTCTTCAGAGGTAGGATGTGATATTGCTTTTGTA--TACTTCGGGTCTTGTCTCTTTGTATGATTTGTGTGATCAAATGAGAGGTTGAAGGAATTTTGGTTggcct-tttcctttcatttcgcCTTCTTCTATAAGAtgattatgtttctgttgcagaATGATGAGGTGGAGTTTGTGCGAACTGGCTATGGGAAGGATATGGTAAAAGTTCTTCATATTCAACGAGATGGAAAAtaccacagcattaaagaggtgGCAACTTCAGTGCAACTTACCCTGAGTTCCAAAAAAGATTACCTGCATGGAGATAATTCAGATATCATCCCTACAGACACCATCAAGAATACAGTGCATGTCCTGGCAAAGTTCAAAGGGGTATGCATCATTTTCTTAGATGCTGCCTGTTT--TGATGCAGAATTCATTATAAGATGGCATGGGCATAGTACTAACTTATTTTAGGTTCCCATTACCTTTTAACCTACTTAAGC---TA------TCTTAAAAATTTCTGTTCTATCCTCAAATTCTCAGGCTTGCAGGAAaagcttgctttttaaaattttttaaaaccaatCATATTTTTAGGCTTCTTTCTTCAGTCTTTCAGGCCAAGATTATTATTGGACAAATTAGAATTTTCTTGCTAATTAGGATCATGAGCAAATTAACATT-CTGAAAGATTTCAGAATAAAATGTAACATGTATGTCATGTATTTCTTTGAGCCCCAGTACTTATATTTGTACTGGAATGATGTGTATTTGTAGTAGAAAATGCCGTTTTCTTTCTTGTTACTGCAGAAGAAAATCTTGAGTATCAGacatatttcct----------tttattcttgaaCTTCATTTGTCCAGC-TTTAAATGCCTTCCCTGC

a score=44650
s chr3           146612236 2195 + 160039680 TAAGATGTCTTTGATCACAAGTATTTCTCTCTTTCCTTCTTTACAGATCAGAAACATCGAGACCTTTGCAATGAACATCTGTGAGCACTTCCTCTCTTCTTTTAACCATGTCACTCGAGCCCACGTCTACGTGGAAGAGGTCCCCTGGAAACGATTTGAAAAGGTTTCATCATTTATG-TACTAGTTTAATAAAAGAAATTGCTAGCGTGGTTTGTGCTGGACTGTGATTGGCCACAAGCTCTGTCCTCCTTTTCAGAATGGGATCAAACACGTCCATGCATTCATCCACACCCCGACGGGAACGCACTTCTGTGAGGTGGAGCAGATGAGAAACGGTAAGAAACAAGGTTCTCCGCCCT-ATTCTTCAAGAGTCGGCAGGTGTCTTTTGTTGAtgttttgttttgttttgtttgttttgttcttgttGGTTTTGGCCCTAAGCAATTCTTTTTCTTAACATGGAGGAAAACTTTAAAGAATTTGTAAATCTTTTACATCTGAGACGAG--ACTATACACTGTG-ATTTGGATTTTACATTACAAGCTTATCTACTTTTGACTGAAAGA--TAACAAATGTGGTAATTCTTTCTGTTACAAAATCTGGAGTTTGAGTCCTGGAAATTGTCT--ATTACTCAGTTTTGAAGCAAAACACTGGAAA----------TGATAAGAATACAAATGTCTATATTTTGTAACCAATGT-TTTTGGTACAGTGTCATGATCCTGTACCAATGATCCAGTAACCAATATATGAAAT----------TACTAATGTTTCCCTGATATCTTATTTGCATAATAAAATACTAATAGTATTATAATCTCTTTAAAATGCATCTCATTTAAAATAGCAATGACCATTATATTATTCCATATAGCAAGAGATTTACAATTTAAAACTATGAAACATTATTATAACATAGACCTTATTA--------------------TTTGATCA-------------GATAATTAAACTGATTAAA---TAAGGCTCCTAAAGCTGGTGTCCCATTGATTTGTTGAGGTCATGAGACGCAGAATTAAATAATCTGTTCAGATTTGGAGCAAGGAACTTTGAAGCCTAGAGG---CAGAGATGGCGGCAACACTTCTATCTGCATAAGAG-------------------------------------------ACTCTTTAACTTTCCTATTTCTAGTTCCTTTCTTCCTTCTTTAGCCGTTAA-------------------------------------------------------------TCTTTCTATTTGAA--------------------------------------------------------TTAA--------------ATCTAGATCTAGTTAAGGCTGTCTCAGCATTTGaataaaatatgatattataaaatataaaactattattataGAAGAAATCAAAAAGTCGTATTGAACCAAGAGGACAATTTTGATC-ACCAAATGCCTACTCACGGGATTGGACTCCCCCACTGAGCTGTTCTCTAAGATGGCACAGACTTATTCTCCATCTTGtcttccctccctgccatct-tgtcttccctcaatctcagcctct-tttctcccttccttctttccct--ATGTACGATTTTAGAGACAAAAAAGGGGAACATTTTTTTTTTAACTCACA-GGCAACATTCTCCTACTTAATCTACACTAACTACTGTCATGAAATTAGAG--TCTAAGCCAGCTCTGAT-------------------------TAACTCT-------------------GCatataattttaaagttttttagtagtcattttaggaaaccaaagagaaatgaggaaaaatatttttaataatagatttagctgaatc--------caaaaatg-ttatTTATGGAATAAATGC---TAAGTCATTTTCAT--TTTTAAAAGTCAAGTCTCTAACATGTAGCTATGCTGTATTttcagtacagcttcagccatgttagccatgtttcaatgttggctaacggcagatggc----tggaggccaccatattggtcagcatagCTCCCAATCCATGTTTACAGATGTT-TGGAAACTTAGTACATTCTCAGTC---CCATTCTTCAACCCCCTTTCAAAGACTAGAAATGACTGGATATCCACCTGAGGAGAGCTGA-TGAGAATCAAATCCACCTATGGAAAGTTCTGGTGTCATTCACTGACGCTCTATCCACTGAGCAAGCAGACTTTG---------CTACCACAAAAGATGGTAGGTGAGGAGAGGCACAGAAATCTCCCTAATCTCAGAGAACCTATGGTAGATTTCATAATTGGACACAGATCTCGAA-CAAAGTTATTGCAACATGATGGGTTAGAGACCACA-ATGGAGGGATTAAGAGGCATCATAACAGAACAGAGATGATCCAAAACGCAACTCTTCCCAGGGTAG-CTGTAATTATTGCTTAGCTTGACAATAGAAA
s HiC_scaffold_1 133169939 2352 + 233722169 TAAAGTATTTCTGATCactattgt------cttgtttcttttacaGATTAAAAGCATAGAAACTTTTGCTTTGAACATATGTcagtatttcctttcttctttttgtcatgTCATCCGAGCTCATGTCTACATTGAGGAAGTCCCTTGGAAGCGTTTTGAAAAGGTTATCTCATTTATGCTCCCAGTTTGATTAAATCAACCTT----ACGGCATACGCTGAAATTTTACGGGAGAAAAATTTTCCCCTCCTTTTCAGAATGGAGCTAAGCATGTCCACGCATTTATTCACACTCCCACTGGAACACACTTCTGTGAGGTGGAGCAGAGGAGGAGTGGTAAGAAACTATTTTTCATGCTTTGATTCTTCAAAAG------------------------------CTATTTCAGTTGTTTTCCT---------------CCTAAATGACTCTGTTTATTAACATGGAGAGAAACTGCAGAGAGTTTTTCAAGCGTTTAAATCTGAGATGGGTTAATGAACATTGTGCAtttggattatatttta-aaatttgtct--ttttgttcaaaataagaaaaaaatgaaacatttcattttgTAACTGAATTTGAAAGTTGAGTGGGATAGATCATTTTCATTATCAGATTTTGTGGTGAGGCAGCAAAAAAGCCCCAGGCTGACAAGAACCCAGATCTCTGAAATTTCTGGccaatatatttttgtataacCTCATTATTTTAT-------------TAACCTTTATAGGAAATATGTACTAAATAGCaatcatttttcataattttatttgcaCGATAAGCTACTGATGCTATTATAATTTCTATAaagtgaatttcttttaaaatagtaataacaattatataatttcatgtaccaagatatttaaaaattaaa--tgtgagaCATTATTGCAATACAGACCTTATTAAATTACATTAATAACTACATTATTATCATGCAGATCTTACTGGTAATTAAACTGAGGaaacattaaaatttcaaaagcttGTGTTCCACTGTTTCTATGAGATTGTTAG-TGCAGAATTCAATAATTCATTAAGACTTAGACTAGAAGGCTTTTAAGAACAATGGGATCAAAGATGATAGAAACATCTTTGTCTTAACAAAAAGTAAGCCTTAATGATAATTATCAATTGAGAGTGTGGATGCTACAcagtttccctttttcttttcttctttcttttctctaccttTCGTTAGTGAGAATTTGACATGACATCTAACAGACATCAGGAATACTGCAACATTCATAAAATATaaggtttcttctcattttgaGTTCTTTTGGGAGATGTCCTTGTTCTCCTTAGAAAGTTTAGTGTGTGAgatatcatttaatatttttattacctgTCTAGACATAGATAGGGCCTTTTCAGTATTTG-------------ATTGACAGTTATAAAATTATCAGCAT--AAAAAACTTAATAGTTGTATTAAATTGAAAAGGTGATTTTTATCTTCTAAATGTGTAGCCATGTGATACTACT------CTAAAATGTtggttaaa-----acaaaatttcttttcctc----ctttcctttcttccatctgtgtctttccttccttccttcctttctttcttccttttatcttgcCTTAGATGCATGACTTTGGAG--AAGAAAGAATAA------TTGCCTAACTCTTACGCCAGTGTTTTCATACCCAAACTACACTGACTATTCTCATAAAATTAGAAACTCTAAATCAGCTCTAACTGAAATAGAATGCAAgccatataaataattttattttatttatttgttcacatatgtaattttaaagtcttttgataataacattaaa-----aaaaagaaattaggaatataaattttagtaatatatttcatttaatccagtatatcaaaaatatttctctatatgataagtgtaagaaaatattttacattcttttaaaaagtgactctttgaaattt---catg-tgtattt----tatattttaagtcatGCTAGCCATCTTTC-ATGTGCTCACAGAGTGGGGGGCCTAGTAGTGGCTACTGTAGTGAT-AGGATAGCTCTCAATTGGCTTTCACTGATGTTCTGGATACTTAgcactttctccttctttccatt----------ATGTGAAATAATAGCATGAGCTAGAATTAGAGCTCAAGAGagctgattaaaaaataaaagcatttacgAAAAGTACTTGTGTCATTTGCCT-CACATTATTCATCAAATAATTAGATTTTGAGGACTTATATACC-TGAGGAATTATCAATAAAGAGATGAACA-AGCCCTTCCTAG-CAGATAGAGCCC------TGTCTCATAA---GAAACAGACCTATAGCCAGACTCATTGCAATTAGA-GGGTT--GGACCACAGGTGCAGGGACTAAA----ATTATGCTAGGGAACAAAT------AAATACAG-TCTTCCCAGGGAAGTCTGAAA---------GGCTTGACAGGGGAGA

a score=19634
s chr3           146616264 2468 + 160039680 TTCAAGACCTCGGCAGAAGACTGGTCAGAGAGACAGAAGAAGGAGATATCTAGAAAAAGTGTTATCAGGGAAATAGAAGAAAAATATGTTTT-----------------TATTGGGACA-GCAAGAAG------CAAAGAGACCCATATGTGATGGCTCAGCACAAGGA----CATCTTCCTATAAACCTAGTTCGG----------------GGGAGCAGGAGTAAGAGGTGATATATATCAGTTGTGGGAAGTTAGATAGAATCCTAGGCCACCTTACCTTGCTACTTCTTATTTTGGGGTTCACCTTGATCATAAATTGCCATG---GGCAAGTAGGAGGTGTAAAGACACTgaagaaaaa-aagagggcaagacccctgagacacaagtaccaggtcatagatggcccatagcatttcccctggggaggttcccacagtcacacctgactgcaggaggccacaaaatgttgcctcactgagtgtccaagcagaagtggaagttgatttgCTATCTGCCACAG-AAGATTAAGAAATCTTGGTT-----AAAAGAGGGCTAGGGAGGAACTCCAGAGTTGGCAG----ACACCCTTGGTGATTTCCACCAAGATATTTTCAG----GCAGGGGAGTGGATGCGGACAGACGTTACAGTGGTTAAGTCCAGGACACTGCTGATGATCAAAGAAAACAGAGCTCTCTTCCTGCCT--GCCTGCCAGGAGGTAGC----------ATTTACCTGAGGTCTCATCACTAGGCCGGCACTGCTGAGCAGAAAGATCAGC--CCCACAGCAGCTCAAGCCTTTTGTCTCTGCAGATGGCTGCAAAGCTTCTGGGTACACACAGACCTGTGGCAGC-TGCCCAGGAGTTCCAG-TCAACTGATCTGAAGCTCAGGCCAC-TCTGATAGCCTGCAGGGCTGGCAGGGA--------AGGGGTAAGAGTATTGATGTGTAGTGAGTGAATTCAGGTTCCCATGTGCACTGGATGCAAAAGTGTGTGTACA---CAGGGCTCTGCATGTGAAACC---ATTTCTACTCGGCCCCTCTTTTGAGAGTACAGGCGTTCATTCTCTTTGTGGCAAAGTCTAATTCCTAATTTGCTTATTATCTAAGTGCTAAACTGGAAGGAATTGATATGATTTTGTGATATCATCATCTTCATAAGCAATGgagattggagagatgactcagtgggccagagctccagccgtgaagacactgaggacttgggtttggacccattgcatggatgcttgtgcacgaaacctcaatactttgaggaaaagacattttgatcccaagagctttctggtctaccagtctagtaagaacagtgagcccccagaaaggcattgtctcaagacaataaggaggagaatattagaagacacttggcatcctgtgttggccactgcacacatgcacGGAGGTGCACACACTCATACACTCACATGCACACACAACACATGCGCCAACaaacaaaacaaagaaaaaaaaggaaaaaagaaaaaaagaaaaaaaTGCCCTTGTATTAATCCATACATTCCAACATTTACTGTGAAGTCTGGTGTTATAAGCCCCTG---------TGGT----TTGTTGGG----GGCCAATAGAATGGTGAGACTCCTGTCCTTCTCCCACACGTA------GTCACCCATG-------TGAGTCCCCAGGGG---TCCTTCCCAAGAGAAT----GGCTGAGTTTCACTTGGTGGACTCAACTCCTTCCTGTTT---CCCTGAACCAAAAGTCTGGGAAAGC-TGCTGAG-TCTTGGATGACATAGGTCCTGATG--TTGCTTTAAAACTC--ATTATATTGTTCCTTCTTGGAGAGCT-------------CATTATGTTGAAGTTTTGAGTATTTAAAAGTCTGCTATTTCCTTGAGAGAATCAGGAATGA-GAAATTTGTTCAGTCCTAAGGTCAAAGACTGCTCTGCTGTTGGTAACTTCCCATGCCCTGATAGGAGAACTAGGCTCTCTGCATATAAGATACAGCATCAGCTGCTAGTGCAAGTGCCATTGGATCTTCAAGATAAAGGCATTCTCTCCTGAGGCTCTGCTAGACCAGGAGTTTAGCTGAGCTTGTGTACCACTATGATGCCTGAATCACTAATGTGAACTAAATTAGCTCCCAAGCCTTTGAGCTATTTGAATTAAAATTCACAATTATTAAAGCATCCAATGGCTCCCATTCTGACTCTAACCACAAAACAAACAAAGCAAACACAGCAACAAAAGTATACCAGCTAACACAAAGCTAGATAGAAAAGCAGAAGGCGAAAGAGGGGTTGCAGATAAGAGATACTGTATTAGATATTAGAAAAAGAAAGCTCCCCACCCCACCCCACCCCCGCCCCGCTTACTGATAGGAAGGCTACTGAGAGGCAGAGATAAGAAAGGACGTGATGTGACCAAGCCCAGGGCCAGG--GCAGGTAGATTTAA--GGGTGACAAGCTAGGCAAACAGAAGTAAGGGGGTGTGTGTGAAGAGAGATCTGAGA-GGTGATAATCACTTCTAAGACAGCTGTTTTCAT-CCTTTGACATGGGGACTGCAGCTCTTTGGTTCTT
s HiC_scaffold_1 133173344 2032 + 233722169 TTTAAGAATGAGATGGAAGAGTGGCCAGAGAGATAGAAGAAGGG-------CGGGAGAGTGACATCacgaaaacagaacaaaaatagggtttaagaaatgagaaatagTTACTGAGGCAAGTAATAGGTCGTAACAAATAAATCCTTATGGAGTAGGCTA-CAcaagaaatttcttctttttataaa---agtttagccctttgtatgtgcatgtgtgtgtggatgGGCAGTGTTCTGCTTCAT-------AAGTCATTCAGAAACCCAGGTTAA------TGGCAACCTTCTGTTTTGAATCTTTGCTT------AGATTTCCACACCAGATAGTGAGGAGAGGTAAAGCAGGTGAAGGAGAACAGGAGGGGCAGACTCCCCAGGCATGAACACCAGGCCAGAAAGCAACTGCAGTAGG----CTGAAGACAATCACACAGCCACTCCCAGCTGCAGGAGAAGCACAAGTCTAGCTT------GCACCCAGGAAGAAT---AAATAGGCTAAATCTCTGCCACAGGAAGAGTAAGAAatttgggtttaaaaaaaaaacagtggaaaaGAAACT--AGATTTGTCAGCTAGACATCACTGGTGACTTCCACAAAAACATGTTTAGCAGAGCCCGGTGGTGAAAGTGAAAAGGC-----------CAGGCGCAGGGCTGTGATCATA--CAAAAAGAACAGGGCTCTCTTCACACCCAAGTCCTTCAGGAGTTAGCCGGAGCTAGTGTCAGCCTAAACCCCACTCACCTGGAGG---CTGTAGAGTGGGAAAATGAGCAATTATAATCAGGTAaagcttttcctttctgttaggAGCTTCAGAGCTTCAGGGTCCTGAGATCATTGTGGCAGGGTAGCCAGAAACTCCAGCTTGTCTCATCTAGAGCCCAGCCCACCTCAGAAATCATGCAGGGCTGGCAGGGATCAGGGTAGGGGACAAGACATTTGTTGCCT--TAAGTGTATGCAGGTATGTGTGTGT-CCAGGCATAAGAATGTGTGTGTCTTTCAGGTCTGTGTACACAAagatgatatttatattttattcctcTT--AAAAATAGAGCTATGTGTTCCACTGATAGCAAAAG-TActtcttaattttcttattaCCTAAG------------------------------------------------------------ATCGGAAA-------CTGTGGG----------AGTTGTGA-------------------------------CATGAAT---------CAAAGTTATAAT---------------CATTGTGATA----------------------------------------------AGAAATGCCTTGT-------------GCAGGA-----TTA---------------------------ACTG-------------------------------------------------------------------------------------------------AAGAAAATAAT--CCTTGTGTTA---CACACACACCAATTCAAATGATGAAG---GGTGTTGCAAACTCCTGAGTAGTGAGTGGTGTCTTTGTTTGGACCTGGCTAGGATGATGATAAGTCT----TCCTGCTCACACACATATACCTAATCATACATGCAGCCATTCAACTCCCAAAAGAAACTCTTCCCAGTAGGATATGTGACTGGGTTCCTCCTGATGGGCTGGGCTCATGCCCATTTATCCTCTGGACACACAGTTATGCAAAGCCTACTGAAAGCCAGGCAGAGATTGATCCTGGGGAATTGTTTTGAAACTCTCattctattatttcttcctttggatCTTCCAAAGCTTTACCATGGACTTGTACTTTTTGGTGTTTCAAAGTCTCCTAGTTCCTTGAATGAATCTTGAAGAAAGACATTTGTTTG--CCTAAAG-----AGCTGCCCTTAAGTCTGTGAGCCCCCAAACCCAGA---GAGAACTAGGCTCTGTATGCATA-------GTACTGGCTG---------------------------------------------------------------------------------------------ATGGCTGAATCACTAATTTGAAATAAATCAGTCCCCAAATCCCTGTACTACTTGAATTAAAATTCATAATTCTTTAGGCATCAAATTTGTCTCATTCTGACACTAATTATAAAA----------------------------AT-CCAGCTAAAGTATTTCtagacaaagaaatgaaagatg-------------------gcAATACTGT-CTACAGGTCATGAAAACAAA-------------------CCCCCAGTCATTTGTGGATGGGAAGGCT----GGTGGTTGTTTTAGGAAAGGGGCTAATG-----AAGTCCAAGTTCAGGAAGCAAAGAGATTGAAAGAGGTGACAAGCAAGGCAGACGGAACAGCTGAGGTGT---------GGGACCCAGGACAGAGATGGCCACTGCCAACAAAACCATTCATGTCCCTTTGCTACCAAGACTAAAGCTCTTCAGTCCCT

a score=63715
s chr3           146619998 2995 + 160039680 ACTTAGTCGATTTT----TTTTGCCTCTATCCTTTACAAGTTTGCAGTTTGATAGTAGAATGATTTAATATGGTTTTAAAATATCCTCCTTTTAGCTATTTTCGTCCACTTTTTGGAGGCGTTAACTATGGAAGCAATTATCCTCTTCATGACTGTTCTTCCCCCCCACCTCAGCTCAGTGAAGCTTTTTTGTGCTTTTTTGACACCTGATGCGTAGGTAAGGCTCTGGGCTTGTTTCCTAGTAATTTGAAGTGAGTTTCTTTCCCCTCGAGAGCTAAACGGTAGATGCACGCTTCTCTGAGAGATCAACCACAGTCTGCCGAGTGTGTAGGAGGACACCAGGAGCT--GAAGAGATTATACTCTAGTGATGTAAAATGTGAAAAACCTTCCTGTTGCACTAACCCTCGACCATGGAGGTGCTGAGGGAGGTGTGGTGCGGACTTCCGGGGCAAGGTCACAGGCTGATTGAGCGCTTTCATGTCATGGTACCCAGA----TGACACTGCTTCTGGTTGAATTACTTCTTTTGGATCTAAACTGGGATCTTTTTAGAGAGAGAGAGTGTGTGTGTGTGGTGGCATATTTTTAGTTGATGGCCCCATGCATTTGAAAGCCTCAGGTTTTTACCAGTGCTCAGCAGGCTGGGGCGCTGCCAACAGAGAAGATAAAATAAGCACTCTGATTTCATCCAGTCGGTCTGATGTGTGCCAAGGAGGAAAAAAAAAATGCTTTCAACATTCAAAGAGGATGGTTTTTGTTGGTTTTGTTC--CGAGTGAGGAGGGCATCAGAGTAGTTGGCTTCCACTCGGACAAAAC--TGGCAGTAGTTGACTGTCCCTGGGAACAGAAGGCACTTAC-GCTGTGGGAATCCGGTGCCAAAGCACATTTGAAAGTGGAAGGCCTCTCTCCTGTTTCCAGCGTGCAGCGAGAGTGAATCATCTCAAGATGGCCAGCCAGGGTCGATATG----------------TGTCACTCCAGGGCTG---GAGGACCGCAGGAT------GAAGGCCTTTGGTTTCAGAGTCCGTTGAGCCTGTGGGGCACAGGAAGCATCCGACAGGTGGTTAGTGTGGCTGTGGGAAAGCCAGTTGCAGCAAGGTCACCCTGGAGACGTTCACAGTGCATCTTGGACACAGCGGCTATTCTATGAAACCCTCATGTGTGTTACCCTAGAAAcacatcaactccaaaaaaaccaggcatggctaccatctccatcccaaagatgagaaaatcaagataggaagaggggaagtgactcctccagaggcacTGTTTCCATGGAAACGGAGAGTGCTGTGGTAGGAAGGGCATTGGGACTTGATCTGAGGGAACTCTGAATGCCAAAGCTGGGGATTC--TAGGTACACAACACTA--CACAACAGTGTCTTGATGAGTAAGATTACGGGAGGAGCCAAAGCTTGGTGAG-CAAAGTAGATGCTGGGGACCAAAGTCACATAGATGCACTGGAGAAGATGG---AGACAGAGCCTTCAGCCTCTCTTCTCTTCACCTTCTCATTCGCCTTTGAGGGGTTCTATTTGTTTTAGTTCTGGTTTAGGGCTGTTTTCTGTTTCATTTGGAGGGGCGGGGGTTTTGTTTTCCAGAAGGAGATATCGGTGAAAGCATTTTAGATCCCATAACTTTGTGTGTAATGCAATGATTGGAGTTACTTTTTCCTAGCAACTCATAGGAAAATTGTCCTCTTAAAGAtttgcttttatccttttaaaatcatgtttctgtgttaagcacatgcacatgaggtgctcacagagtccagaggcttcaaaccctgcaggggctgcagttacaggtgcttgtgagccacccacgtggg-----tgttgggaaccgaacttgtgtcctc---------tgcaaggacagtgactgatcttagttgccgagccatctcggcaggcccTGTAAAATTTTAAAGGAATACCATACTTTCGAGATGCACAGGGGCCATTTCAGAAAATGATGCTTCACTA-----TTCAG-TGGATGGAGGAGATGCTTTTCAAAGGCTG--------------AGTCCCGAACGCTCGCTGTGG-ATGGGAGACGGCATCCCTCTACTCTCCTGGGAAGCCCTTTTGAAGTACTGAAAAG-AGACAAAGAGCTTCAGGGAGGAG-AAACGTTGCACAGATGGAGAATGATCTAAAAGAGGGGCAGAAAATCACGGAATCGCGTGGTGTGAGGCTGAATTTAAACCTCACCTCCGCCCATGTCTAACTGTGAGGACGGGTGCAGA--AATGAAAGTCTCCTGCACAGAGATACTTACTCTGGAGTCCGCTGAGGACTAAGTAAGAAAATGTCTTGGAGAGCTATCAGCCAAAAGCACACTTACAAACTGGATGGTGTCAGCCAAAGTTGCAGCCCATTTCCTCTCCTTTGCTACCTAGAGTGTGAGAAACTGA------CAGACGGTGAGGGGGAC-------------GTCAGCTCTCTAGGCAAGACAGGGACTCCACTGTGATGTTGTTGCCCCTTGACATAAATCACCCT---TATACTTCTCCACTCAACTTCT-CCTGTTG-TGGGCTCTGCTGTTCTCTTGGGTTTGAAACCCACTGCCATTACCTATGGGTGATGTGGAGCTAGTGTCTTTATCCCTTTAGAATCTAggctgagcatgtacttgtggtggcagagcacctacctagcatgcagaagaacttgggtcgctctgtacctgaaacagaaggaaaaagcacaaaatataaagttagacaaaCTGGGCCAGATGAAGGCGTTCAGGGGCTGCTGGCACCTTCCTCCTGGTCTTTCGTCAAGTACAGCATCCAGTGAGAACTTCTGAAAGTTAAGT--------TTTTCCATCGTGCCAGTTTATCTGAGGACGTTCTCTACAGAGCCCTTTATTTAATCAGAACATACCGAATCAGCAGATCTACCGCTAACCTCTGGCCATCGCATTCTCTGATG-----------GTAGCTTCAGAAATGTCAAA----------------ATGTAGGTAGTGCT-----TATCTGGCTCTGGAGTGAGTCACAGCAACTGAGGCCACACAGGTGGCAAGGCACACCATGGGACTTT
s HiC_scaffold_1 133175558 2673 + 233722169 ATTTAATTGATCTTCACTTTTTTTCCTAGTACTTTACAAGTTTGATATTTTCTAGTAGGATGatttaatatagttttaaaatatcctcCTTTTAGCTATTTGTGTCC--TTTTTGGAGGTGTTAAATGTGGAAGCAATTATCCTCCTcatgacagaatttttttttc---ttggctcaGTAAAGCTTT---GTGCTTTGT-GACACCTGATGCGTAGGTAAGGAATTGGGCTTATTTTGCGTTAACTCACAGTGAGTTTTTTTCCCTGAGAGAGCTAAAGGGTAGATGTATGCTTCTTGGAGAGATAAACTGCAATCTGTTAAGTGTGTAGGAGGATACTAAGAgctagaaaaaaattatgttctagcaaagaaaaatgtgaaaatctttccttttgcatTACTCTATaaccatggcaaaaaaaaaaaa-----------------------aaaaaaaaaacccgattAAGTGATTGCATGGGAAGTAACCTAAAAAAGGGGGAGTCTCCTTGGTTGAATTACTTCGTTAG--TCTAAATTTGCATCTTTTTAGA------------GTGTGTGAGGCATCATATTTTTAGTTAATGGCCCCATGAATTTGAAAGCCT-AGATTCTTACCAGTGTTCCAAAAGCTGGGAAATTgccaacagagaaaataaaataagctctATGATTTCATCCAATGTGCCCAGTGTGTGCC------------AAAAACTCTTTGAGCATTCAGAAAGAatcgtttttgttg---ttgttcgtGGAGTGATGAGAGTACCAAAGTAGATGGTTTGTGTTATGCCAAAACTGTGGCAATCGTTAATTATCTTCAGGAGCATGAGACATTTTCTTCTGTGGGAAACTGATGTGAAAACGAA-CTAACATCACAACTGATATCT-CTACTTTCAGACTAGTGAGAAAATAGATGATTTCAGTGTGACCAATCAGGACCGACATTCCCTGAACTCAATACCTCTCACCTCAGGGCTGACTGTGGACAGGATGATACAGGAGAAGGA----GTTTCCAGAACCCAGTGAGCCTCTG-------GGAAACATTT-ACAGGTGCTTAGAGTAGGTAGCACAAAATTAATTATGGCAAAATTATCATAATGACCTTTACAGAGCATTTCCTGTATGGCAACCATTCTA--AGCCCTTCGTGTACATTATGTTAGATATGTGTTAGGTCCAGGAAG--CAGATATGA-TGTTCTCTCcaatttacagataagaaaatcaaGATAGAAAGAGGTTAAATCATTTCCCCAGGGTAATAACGCCTATAAAATGGGAGACTACGGAGACAAGAAGAGCACCAGCATTTGAAGTTAGGGAAAT-------CCAAAACTGTGGATTCAATTATTGTGTGACACTAGGTTCAGAAATCCTGTGAGGAGTGACATCACTAGAGGAGCCTACATTTGTCTAGTTTATGTAGATGCTGGCGATCAAGGCC----AGAAGAATTGGAAAACATGGAACAGGCAGA------------------CTTCACCTTT---------------------------------------------------------------------------GGTTCTGTTTC---------------------agctttttatttcccttca----------------------------aCTTTTT-----------------------TCCTCCCAA----------------TTGCAAATCCATGTTTT-----------------------ATTTCTGCAgagccca---cccccaccccccgc-------------------------------cccaGGAGGGATTACTGTTGGAGATAGA--TTGTGTTCGTTTTTAAAAGTGTAGAGGtaatctttgatttta------------------------ttatgaaacATTTAAGGAATA---------AAAGTTTCACAAGGGCCATTTCTAAAAGCGATGCTTCAGTCTGAATTTCAGACCAACAGTGATGGTTATTTTC--AGGCTGGAGTCTCTCTGTGAGGCCCTCAAAGTACACTGTGGAACGAGAAGCAGCAAACTTCTCGTCTCCTAGATAGGCCTCTTATAGCACAGAAATGCAGGAAGAGAGTTAAAGGAAGGAGAAAACATTGCACAGATGGAGAGTGATCTAAAAAGGGGGCAGAAAAGCACGGAATCTCATAATGTGGTGCTGAATTTAGACTCCACCTCTTCCAGCCCCTAGTCATGTGACCATGGGCAGATGAATAAAAAACACCTGCATAGAAACACCTACTTTCTAGATGTCTGTGGGTTAAGTAAGAGAAAGACTGGAAAAGGCAGCAACGAAAGGC-TACTTGTGGGCAGGAGATTGTCAGGTAACGAt---accctttcctctttccctgccaCATTGTACAGAAGAGGCAGAAGGGACCAGGAAGTGAAAAAGTCAAGAGTGATGTAGGTGAACTATCTAGAAGAGAAAGAGACTAAGTCGTGAGATTCTTATTCCTGGACATGAATCAATCTTGCTGCACTTGTTCATTTAACATCTACCTATTGATtgcttctgtaattttcttgGGTTTGAGACT------------------------TGGATTCACTg--------catttaaaat----actgattttgta-----------GGACCAC-------------------------GTCTTTGTGT---------------------------ATTTAGAGCCTGATGAATTCAGCCAACTGAAGCCTTTAAAGCACCGTTGGCATCTTTCTCTTGATCCTTCATCAGCTACAGCTCCCAGTGAGAACTGCAGAAAGTTAAACAAATACCATTGGCTGTTATACCACATTATCCTGGATCACATTGCACAAGgcattttatttaattagaaaatattaaatcagcaaatCTTCCACTAATCCTTGGCTATTGCTGTCTCTGGTAGGTGCACAAATGTAGCACTGAAAACACCAAACTACCATATAGTCATTATTTAAGTAGTTCTAAAACTCCATAGCTCCTGCATGAATTATAGTAGTGAAGCTCACATTGGTGATA---TAAACCATTGGATTTT

a score=17309
s chr3           146624410 274 + 160039680 GAAGACACGGTTCTGCTTATACTCACTCAGTGCTACCCTTCTGTCTGGCACAGGACCTCCCGTCATTCACTCTGGAATCAAAGACCTCAAGGTCTTGAAAACAACCCAGTCTGGGTTTGAAGGGTTCCTCAAGGACCAGTTCACTACCCTCCCTGAGGTGAAGGACCGATGCTTTGCCACTCAAGTGTACTGCAAGTGGCGCT---ACCAGAGACGGGACGTGGACTTCGAGGCTATCTGGTATGGTTGGCGAGCAACTGCTAGGACCTAAAACTGG
s HiC_scaffold_1 133180113 266 + 233722169 GAAGAGACTGTTTTACTTATG---ACCCATCCTTACCTTTCTGTTTAACACAGAGCCTCCAGTCATTCATTCTGGAATCAAAGACCTCAAGGTTTTGAAAACAACCCAGTCTGGATTTGAAGGATTCATCAAGGACCAGTTCACTACCCTCCCCGAGGTGAAGGACCGGTGCTTTGCTACCCAAGTGTACTGCAAGTGGCGCTATCACCAGAGCAGAGACGTGGATTTTGAAGCTACTTGGTATGATGAG--------TGCTAGGATCTGGCACTAG

a score=78746
s chr3           146625155 3471 + 160039680 TGAGAATCATCATACTGACGCTGCCAGG--CAGGGGAGAGCTTCC-GCCTCCCAGGAAAGGCAA--------AGGCCTCAGCTTAACTTGCAAGCTCAGATCCACCATCTCCAGATGCGGGGTGATCACCACACT----GCCTCAGCTGTACTGAAGGTTCTGTGGTTTTCGTCACACATGGT----------GTTTG-----ACTTAAGCCCCTGAGAAGGAAGCTCAAGGATGCAGCCATG---AGCAGGGAGAGGGTGTGTGTCTGGGAGTCACTCTTCCCTGTCTGCGTACATGGAAGAAGATTAATGCTGAAATGC-TATTTGGGTCAACTATCACTATGCGAAGA---GGTAGC--TCCTTAGTGTTTGTTTAATG-----CCGTGTTGgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGAGAGTGAGAGCAGTGGGAAGGGATATGAAATGGATTCTGCTTGTTTTCAGTTTAGCATTACAGAATAAGGATCCTTCCTTAAAATGATCCATAAGATGGCTTTCTGGG---------CATTCCTACTTTTTAGCTTTATAATGCATTCCTAACAAATCA---GATGAGCTTCCCCTATCTCCACCTTTGTGTCCTAGGGGCGCTGTCCGGGACATTGTCCTGCAGAAATTTGCTGGGCCCTATGACAAAGGTGAATACTCACCTTCCGTGCAGAAGACCCTCTATGATATACAAGTGCTGTCCCTGAGCCAGCTTCCTGAGGTATGCTTTGTCACTT-GTATTGGGAGGACGGTGAGGAGCTGTGTCTCCTGTCAGCTCTGAGGAAGAGTTGAGTGCTAAAATAGGAGAGTGGAAGACACTTGAGAAATGACATCTGTTGTTGTTCAAAAGCTTGTTATAGCAAGTGAGAAGACAGCAGAACATGG-GAAAATCTGTTCAACCTAAAAACACAGGCCGCTGCCACAGTGCTGCAGTTTTGATGGAAACTCCTTTGAGTTCCTTCAACCTACCGCAGACTTAAACTTCAATTTCAGACCACTTCTATGCCTTGACAGAGAGATAACTAGACACAGGTTGTATGTTTCAAGGTAT---AAATGATAGGTGTAGAGAAATTCAATCCATTGTCCTatccttccttccatccatccacctacccacccatccatctactcatttatccacccatccatccacccatttatcatctattgtgtcactggcaggacccaagggatacaaagataatgtagacatggtctctaccctcaaatatttcatcattatgtgaacaaagaaaacaagtaaaaaatttaaaagatcaac-----------taataggttattatgtgaatatggggaca--gtctcactgaggtgtaaga-ggtgccaccggc--------------tagattttctaggagaggagtgtgctga------gtcttcaggaacgataggggtaatctgggtTTATACTCAAGCGCTAGGGGACAGGATAAATGTGGAAACGGGAGACAAGCATGACACAGACATTTACTGTTAAGGGCCAGCCACATGCGACATGCTAAGAGGGAAGCACTTTCCCATGTGC---AGGCATAAGGTAGAAATGGGTCAAGaggacatttgtaggctacct-tagagtctatgctttattctgagtctc-tgggggccacttagtat----agcaaagtatagcatggtaagatttgcattctagagtgatcac--AGATAGCAATATGATAAA--AAAATCACAATGGAACACAGGCTAGGAGACTTG-CAGGATGATGTTACAGAGGTGTGGCCAAGACAGCATGGGCCAAGGCTATG-TTGAATTAAGAGAAGCATTGCCTGG-------------------ACCAGCCTGACCTC-----------------------TCCTTGGT--------------------------------------------------------------------------------------------------TAGCACTGTAGCATCTTCTTC--------CTCTGCCTGTGCCTACCTCCACTGGGTAGAGCTGGTAAAACGAAGCTGATAAACCCTTCAGGTGCCTATAGCTGCCCAAGAATTTTTCACCCAATAGTCTGGAGACTCTTTTCAGAACCTGGGCGGATGTCTACTAGAAACCTGTTCTGTGGGTGAAGGCTCATTTCATGAGGCAGCACATTCTTAGGTCTACAAGTGGACTGGAGAAATGAATTT----------GGCTTGGCACACAAAGAGAGTATCTGTCTACATGA-TCCAAGGGAGAAGATGGGCTCGCTCAATGGCTG--GGTTGGCTTTTCCCATGATGTCATGCCCCAGCACAGTATCACAAAGAGCCAGAATTTTAAATTACAATGTGACCTTAAAGATT-TAACACGAGTACTTTTGTCCA-TTAGAAAAGTAGAGTATAGTTCACTAAATCTT----------------------------------TATGTCATGTATATGAGTCTATAATTTTACACTTATTCCAGGACTTATGAATGTTAGGGACCATACTATGTGGAGGGATGGA------GTGGAGAAGATGTTAGACTGTTGACTGGCCAGTTTCTGAAGGCCAACTGGGTGTGGAGGGGATCTCCTAGATTCCCACCTCAAGGAG-CCTGAGGTATCCAGAGAAGG---------TTTAATATTGAAGGGAGAGGAATGGATCTGCTATCAATTTCATAGGAAGACTAGTGTGGATGAACAGAGGGAGCAATTGGCAGCAGAGGATCATGGGAGTGTACCTTA-------AGATACAATCATGGTCACAGGAAGTGGTCGGGAT-GGATGAGTTAGA----TGGAGGAAGGGAGAGAGTCTCAGGTGCTCAGATTAACCCATGCTGTTGTGGATTCCAGATAGAAGACATGGAAATCAGCCTTCCGAACATTCACTACTTTAACATCGACATGTCCAAAATGGGACTGATCAACAAGGAAGAGGTAAGAGACTTTAGAAACAATGAAAGCTCATTCATGCACCATCATCCTCCAGTCTCCTCGTCAACCTGGGA--------CAACTG-------TAGCAGCTGCTGGCTAGGGATAATATTTATAGTCAGCACTGAGTGGAACCCTCCTTGGCTCTGGGTCTTTCAGTGCCCGAGGCT-GAGTACTCCAGAAGTGGATGAGAGATCACAAAGGAGGCATGCTAGCTTCGGGGAGGAACA-AAGAGAAGAACAGAGTGTGCCCAAGGAAACAGCTCTAAGATCTCCTT---GGGAAAGTGCCACCGAAGGTCGCAGCTGCGTTGTTCTTCCATCATGAGGCAAT----GGGAAAGGAAGGCTGTATTTTCATTTTCCTTTATCATGCCCACCTTTTGATTAAACACTCAATTCAGCAGCACACAATACATTTGGGAGACATGAAAGTGTGTTTGTGCTCCTGATGACA-------------AGAACGAGAAATGTCTGCTTTCAAAGGGAACCTTTGTCTCAGGAAACACAC-AGCCCCAACTTCCTTTTAGCTGT----GACAATCAAAC---------TGTCTGACTAGGCAGCCTGGAGACCTGATTGGTGGCCTCTATGGTCACGTTCTGGGAAATCAGAACTGACCCTGCCCCAGGGACATTTTC--AGCGATAAGCCTTT------TGACCCCTCTGCAGCACCATTTTGGGTAACTGCTTTTAGTGT-------------------------------CTATTTGAATGTTTCTGTGGGTG-GAGACCACACTCTCCGATGCATAAGCTTAACCGAA-GAGTCTCTAGAA
s HiC_scaffold_1 133181229 3707 + 233722169 TGAAGAGCATGAGGTTGAACGTGCTAGGTTCGGGGTGGTGCTCCCAGCCTCCTACTAAAGACAGCAATTCAGAGGAGATTATGTGTTTTTGAAGCTCAGATTCAGCA---CTATAT-TGGGGATATTAGTATGGTTCTCACTTCAGCTGTACTGAGAATTCAATGACAC-AGTCATAAAAGGCTTAGTACAGAGTCTGGACAGAGTCAAATCCCCAAG------GTTCAAGGAAACAAC-ATGCACAGCTGTCAGAGGGCTAGACTTTTGGGATTTCCTTTCATAGGTTTCTCAAATGTG-GAAGATTTACCCCCAAATGCCTATTGGGCCCTGGTACCCATCTATGAAGATAGgctagtgatgttcagcatttGTTGAGTGTATGTCTGTGTATGCATATGAATatgtgtatgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---------agagaaaTGGGAAGTGA------------------------CTCTTTAACATTACAGGATATAATCTCTtc--taaaataat------aacttttttctgGGGGGCAGAAATGTCATTATGTCTTAGCTCTATAATGCATAACTGAAACACCACTTTATGAGAATCTTTAGCTTTCTTCTCTGTGCTTTAGGGACACTGTTCGGGACATTATCCTGGAAAAATTTGCTGGGCCCTGTGACAAAGGCGAGTACTCGCCCTCTGTCCAGAAGACCCTCTATGACATACAGGTGCTCTCCCTGAGGCAGGTTCCCGAGGTATGTTTAGTTCCTTGGCATTCTGAAGACTGAGAGAAGTTGTGTCTCCTGTCAGCTCTGAGAAAAAGTGGAGAGTTAAAATAAGAAAGTGGAAGACACATGAAAAATGACATCTGTTGTTGTTCAAAAGCTTGTTATAGA----GAGAAGAgagcaaaaaatggaaaaaatctgTCCAACCTAAAAACACAGGCCACTGTTACAGATCTTTAGTTTTGTTGAAAA-TTCTGTGAGTCCCTTCCACCTGTCtctgatttaaaatttatattcaggACATTTTAGTGCCTTGATGGAGAGATAATTAGATGGAGGGTCTATGTTTCAGGAGATTGAGAGAGCAAAAGATAGAGTGATTCGATCTGTT----Tagcatttatttga-------------------------------------------------------aattattggTTATTTTATCTCTGATGGTA-GAAAATGATGCAAAGATAAATTAGAAATATTC----CTTTCAAAGCACTTATCAATCGTTgagcaaaaaa---aaatagaaagccaAATAGACAAACAATGCAACAGATAATAGGTTATTATGGAAATACAGAGGAAGTGTCTAAAGCAGATGTGAGATAGGGCCACCCACAAGAAGagcatacatatatgtgtgcgtacatgtgtgtgtctgtgtgttgtcCTTACAGAAGGTAAGGGTAATCTGGGCTTATATGTAAGGGAGCTGGATCAGAGTTGGAATGAAGACAAAAGGC-AGCATAATACAGTCATTGACTGTTAAGAGCCAATCGTATGTAAAGCTCTCTATGGGAAAGTCTTT-CCATGCTCGCTAGTCATGAAGTCAAAACCAGTCAAGAGGGCCTTTTTAGTCTACTTACAAAATCTGTACTTGCACTTG---CTCATAGGAACCACTAAAGAGAATAAGCAATGTGTACTGTGGCATAATTTGTCCTCTAGGAAGATCACTATGATGACAGTGTGATGAGCTAAAAGGATGAAGAACCACAGGCAAAGTTATTTGACGGTCTGCTACTGCAGAAAT-TTGCAAGGAGGCCCTGAGCCCAGGTCATGATAGAAATAAgagagaaaggggctggggatttagctcagcggcataagcgcctgccttccaagcaggcagtcgtgagttcgatccctggtaccggtaaaaacgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaagagagaagtgctATACTAAGACCTGGACAGAATAAACTTCTTTGATGGTCCAGCACTTCAGAGGATCCTTCAGCCCTTACTTTGATTTTGCCTCCTTTCACTGAGT-GAATTAATGGAGCCAAAGCAACTCACTCTTCAGTGGCTCAT-GCATTCCCAGAATTTCCTGCCAAAGTACCCTGACAGTACTTCCAGAACGCAGGCAGACCTTTTCTG---------TCTCCAGAGGGCAGATCGTGCTATTGGTATGTAGAGTCTTAGGCCTAAGAATAAAC-AAAGTAGTGGACTTTTGCAGGAGGGACTTGACTGCAAGCTGAAATGTTTATCCTTGTGAGTCTCAGAGAGGAGATGGGACAGACCGGGGGCTGTTGGCTAACTCTTCCCATGTTGCAATGTCCTGGCATGGCA-CACCAAGGGTCAGAAAACTAAATTGAAACTGGGCTTTCCACATTGTGATGAAGATATCGTTGTTGAGGTAGAAAAATGGAATATATctgacaaagtttttttttttttttaatagcttaACTTATAGCCTTCATACATCTGTTATGTGAATTTCCAACTATACTCTTACTCCCCGACATGTAGATGTTAGGGACAGgccca----gagagaaaaaaacaacatgaaaaagaagTTAGAATGTGGCACGGCCAGTTCTTGGAAGCCAGGTTGGTGCAAAGAGT-TCTCCCAGGTTTTGGACTCAAGAAGCCCTtacttttctgaagaaaaaaatagattttctaCACTGAGGGGAGAGGAGTGAGCCTATCATC----TGATAATAGGATCAGC-TGG------AGAGAAAATGTTGGGAGGTAGAGGAACATCAGACAGTGCCTCAAAGACAGAGCTGGAATCTATTTCAGAGGTTGAGGGGTGGATCGGAGGAGAGAGAATGTCGGTCTGATAGAGAGACTCACTGTGGCCCGGTATGATGCCTACTCTTGTGGCTTTCAGATAGAAGACATTGAAATCAGCCTGCCAAACATTCACTACGTTAACATAGACATGTCCAAAATGGGACTGATCAACAAAGAAGAGGTAAGAGAACTTTAGAATACCTCAAACATACCTCTGTTGCAGCCTTCTTATGGCTTTTTGTAAACTTGGGAATATAATGTCACTGAAACTCTTAACAGCTACTGCTTTGGGG-AATGTTTATAGTTA-CACTGATTGGA----------------GGTGTTTCAATGCCTGAGGCTGGAGTACCTTAGAAGTGGGTGAATGATTAGAGATAAGGAttggag-----agagaaaaacacaaaagaggaaCAGAGTGTGCCCAAGGAAACAACTCTGAGATCTACTTGTCGGAAAAGTGCCATGCAAGGTCATGACTTCATTATTCT---ATCATGAggcaacaaagagagaaaaaagattctgttttcatgtcctttcatcatttctatcttttgattAAGCAGGCAATTCAGTAGCATACAATGCACACAAGAAAGCTGAAAGAGTGTTTTTGTTTCTAATGGCAAATATACAAAGTGAGatgaagaaattcattttttgagagaaaatatttgtcttGGAAAATGCATGGGCCCTGAATTATTTTTAGCTGTAGTGGAAGATTAAACCACTCACTGTGTCTGAACAGAGAGCCTAAAATCCTGACTGGTGACCTGTGTGGTCCGCTCCTGGGAGATCAGAACTGTTCCTTCCCC----ATACTTTCAAAATGGTAGAATTTCTTCATGTGATACATCTGAAAACATGAGTTGGGTGAGTTCTTTTAGTATGTGTAGAACAGTGAGATATGGAAAGGGCTAGCTATTGGGATGGTTCTGCTgctataaaatcatattttttggTGGGTAAATTCCAATAAATGAACTTCCAGAA

a score=12434
s chr3           146630329 712 + 160039680 CATACAGAACACTTAAAA---TTTCTATACTTTCTG------AGAAAGCAGCTCATCGACCAACTATAGCAAGGAAGCTCCGGCCCTGCTAGACTCGAAGCCACTGTCCTGCAGAGAA-------------GTGTTCTTCCTTGACAATTTGACATCCTCGCTTTAACATTGGCTCATTGTAAGGAGA---CCGCTCTC-----TCTGACGTCACCCTGTGCTTCCTCTCCAGGTTTTGCTGCCTCTCGACAATCCCTACGGCAAAATAACAGGGACAGTCAAGAGGAAGCTGCCTTCCAGGCTGTGACGTCATGGCTCCAGCCGGTTGCGAT--------GCTGGGGAATAC---------TGTATGCTTGCCTGCA--------------AAAATTTCAACTCAGGATATTGAT----------TGCTTTGTTCTGTATGAAGTAATTGCTTTGTTGTTATTGTTGTTCCTAGTTCAACAGGGAACTTGTAGTGGTATGTATGTGGAGTCCCATGTTAGCAGGCCCAACCTGCTCCACGGCCATGGGCAGTTTCCTTAAAAATTACTGGGCCATGTTAGGAGAATCAC--AGTGATAGTTCTCCTTGCTGTTCTTG-TGTTCTCTGCCTTTGAATCCGTCTTTAGAATCCAATTGTCATAAGGACATAATCGTAAAGTACTGGCTGCCGCCACATTGATTAATCTGAACACAGAAGCAAA-------CACTGTCATCATCCTAGGGATATGTCTGGGTCTAACTGAAAACAGAATAAAACCATGTGAAAAA
s HiC_scaffold_1 133186675 745 + 233722169 CATTTATAActctaaaaaaatcttttaaattttctggaaaaaaaaaatcaatgcatctCTCAACTGTtgccagaaaaataaagcattaacATGAGTGGAGTAACTTTACTGTAAGGCATATATAttttgctgagtttttttttgctg-----------ttgttttaatACTGATTCATAGGAAGGAGAGGACTGTTTTCATGCCTCTAAAGTTACTATGTGTTTTTTCTGCAGGTCCTACTGCCATTAGACAATCCATATGGCAAAATTACTGGTACAGTCAAGAGGAAGCTGTCTTCAAAGCTGTGACATTGTGACC---ACCAATAGCAGTCCATTTTAGCTGAGGAATTCCTTAAGTCATTTGTGATAACCAGCAATATGCAAATATGCAAAATTTCAACCCAGCATATTAATTTACAGTATATACTTTCTActctataaaataatttatttct--------ttatacctAACTCAGCAAAAGGCAT-----------CATGCAGATTATCTTGTTAGTAATTATAATATGTT------TTATGGATcgtttactttaaaaatgctgaataatatTAGAACAATCATAAAATGATATTTCTTTTGGATGGTTTTGTTAATTCCTATGTTAGAGgagatatttaaa----cattttattaa--aaatgatcat---GTATTAATGGAGGTCACATCAATGAATATGAGCACAAGTATAAAAAACCGCTATTGGTTTCATTTTACTGATGCTTCTAGGTAAtgcagaaaatgtaattaaactaTTCTGAAAA

a score=24873
s chr3           146639907 1570 + 160039680 GTCACACATTAGCTCAGAGGAATGGGATCTGGCTTTCC------------------------atatccaaccttctggcaatagatactaatattgactgggacttcgatatggcggc---------------taatacga-acttggtggcacgttaaatacactaagctctttttatttaaaagggggcagtgattcatcttgactaaaatggatactcGTTTCCCACCCATAAGGACTCAGCTGG---CACAATCCAGGGACTTCCAGAATCCTATG----------------GAGGGTCT------CACTTAAAGGTAATGAGGCCATCTGTAAGTGGCCATATATGACCCTACAGCTCTGTTAACTAGGGAGCCATCACAATGCTCCCAGTACAGTAGTGATGGAAGGACCCCTTGGAGGTGCAGCTGTACTCCAATCTGGAGTTGGTAC-CTTTTGATAATAGGATACTGTCCCGAAGACAAGGATGGTCTCTAACCACTTGACTTATGTGTAGTTTTGTTCCAAGTAGACAGAAAATTTGGGTTTGGTAGCCTGAGGCGACAATGGGAAGGATCTACTGCCCTCCCCTTCTATTACCTGGCTTGGAAAATGGTGCCTCTCAG---CCTCAACGTTAGGCTGTG-------TGGCA---CATTCCCAGGGTGACAC-TTGACAAGAGGACACAACAGCAGTGGTTCAGAC----------AGGATCATTCAATCAACAAATTTGCCACTTTTC-AGAAATACAGCTGTTCCTAGCATTCTTCAGAAAGAGCCATAATCAAACCAAATTCTTAGAACTCTTATTGGCGGGTGTGTGTGTGTGTGGGGGCGGGGAGATGCTGCACATGTAGGGTATCACTGAGTGGCAACTGCCTGGTGGAGACTGTGGATGG-ACGCAGAGTCCAGACCTCTCCATCCTTAGAGCATAATA-----TGAGGGTGGAAACAAACCT---GATGTGATTTTTAGAT------------AATGGGGAAAACCTCAGAGATTTGTACAAACTGGACTTGTAGACAGGTCAGAAGTGAGCCAGAGGCCAGAAACCAGACCCCTGACTTTTATCTCAGTGTTCCCTCTCCATTGGGGATCTGTAGCTCTGGGAGCTTGCCCTGTCAGCTGTGGGTGGGTTAAGGCTGTGGTCATGACCTCTACACTCTGCATCAACA--CCGCAGAAGGCTAACAGC------ACAGACGTTCTGGTGGCCGGGAGA----ACCTCGGCACTAACAACACACTATTGCAGTCTTCCCAAACAGACAATTGAGCAGAGCACTGACAACCAATTAAATATGCTCAGATTAA------ATATTTTATTCAGATT----------------TTTAACTTTTGGCTGTTTGTTGTTGACCCAAACCCACCTACATTGCAATCAGAAAGGCACCACAAAGCCTCTCTTTTATGAATTTCACAAATGCCT-TTAAATGCCCCCTTTGAGTCAAC------TCATCGGG---------------------CTTCAAATTAACTCCTCTAGAT-TCTGGAACCCAGTACAAATTCATGTGTAGTTTTCTTCTCAATG--TTTCCTTTAAGTGACCATAATA--TATTTAAAAGGATCC-----GTGCTGCTTT-----ATTTCATTTGTTTTGGTT-------------------------------------------------------TCTGTGCTCTTACGATGATAAAAACATCTAAAGCTATCCAATAGCCTAAAG-------GAAGTA--ACTGCTTCAGTTTTTA
s HiC_scaffold_1 133202313 1689 + 233722169 GCCACACACATGTCCAAAAGCATGGGATCTGACTTACTGTTGCCAAAGACCCTTGGTTACAAATATCCAGTCTTCCAACTGTTG-CACTGATACTGAGTGTTAACTTGATATATCATCAATCTTTGAGAAACCTAACCAGCTACTTAGCAGCAAGTTGAGTACATTGGATGCCTTTCATTCTAAAAGGGGCAATGATTCATCTTGACTAAAATAGATACATGGTTTCTGCCCACAAA-ATTCAGCTGGAAATACTCTCCAAGGATGTACAGAATCTCACACAACATTACTCAGGCCAAGGGTTCACTATACAGTAGAAGGAGAGATGGAAATCAGCAGATGACCATATG---CTCTATTGGCCTATTACATACTGAATTATTAAAAAGCTGCTGACTCA--AGTGTCAG--------CTTGGAGG--------------------------GTACACTTGTGATGATAGGCTACTGTCCTCAGTATGCAAAGTTTCTCTAAACACTTGATTCATATAGAACTATGTCCCAAGTAAGTAAGGCACATGGATCTGGTAGCCAAAG--------TGTGAGAATATCTTTGCCTTCACCTCTGTGATTCACCTAGGAAATGCATGCTTCTCAATCCCCTCCACTCT-GGCTCCGACTCTAATGACGTTCTATTCCTAGGGAGACACTTTTACCAGGCGACACAGTGGAagtgatttaaatttaaatctaaagAATTGTACAATCAGCAAGCTTGACAGTTCTCAAGAAAAACAGCTGTT-CTAGCACGTTTCAGAGAGGATCTTAATCAGACC-AACTCTTAGAATGTTTAC-----------------------GAAGGGGAAATGATGTAGA-ATGTGACAGTGCTGAGTTCTAACTGAatggtggaggggagcagtgaCATATATAACTCAAATCATTGCACTCTTAGGAAATCATAGCAATTGAGTGCTGAGATAAAGCTCTAGCTGTTTATTTTAGGTGGGTATCTACTGGAGCGGGAGAAACTAAGGGACCTGTGCA----GGGTCTGCAGA---------------TCTGAGACCACATCCAGATCTCCTGATCCCTGGTCAAGCACTCCCTTCCTCCTG---------ACTCCAGAGTGGCTG--TTTTTGATTATGAATGGATTAAGCACATGTTAATTTATTCTGTGCTATGCATCCACAGCACGCTGAAGGCTGATGACTGATCTACAGGTATGTTGGTGACTGGGAGATGTCATTTTAGCATTAAAAATTCATGATAGAAATCTGTCCAAATAGCCAATTAA---------TGTCAACC----TAATTGGCTCAGATTAATAAAGGCTGCTCCTCTCagattttaactttattttgtctttaatttttg-----ctGTTATTGGCCTAGAGCAACCTTCATTAAAATCACACAGGTATCACAAAG-CTCCCTTTAATTAGTTTCACAAAAGCATCTTAAATAGTAC---TGAATTATCATTTTGTAATAGGGGCAGGATACATTTAGAATATACTTTAAGCTAACTTCTTTAGATATTTGGAGTCCAATA-AAACTTATGTGCATTTTTCTT---AGTGCATTTCCTTTAAGTTAGCATAACACTTGTTTAAAGGAGTTTAaataatgtgagttttaaaaaattgttttattttggcttatataCCCTCATATAAGTACTGCATGCTAAACGATTGCATCACTGGAGCTCTGATATGTGCCcttatgaagat-aaaatttctAGAACTATCCAATA-CCCAAAGACCTATAGAagtaatactgttttatttttta

a score=30231
s chr3           146641684 1188 + 160039680 AGGTCAGCCTATGATCTTACTCTGCAGAAGAGAGGCACATTTTCTAACTGGAAAAGGTTTGGCATTTC-----CTGACTCCTCCTTTGAAAATGGTAAAAAATATCCCCACTTC------------ATAGGTGTCGAGTT------TAGCTTGTGGGTAACCAAAGACTTCTGTGTCCTTACTTGCAGGCTGCTCCATCATTGGACATCACTACTGGTCTGTACACGACTCTCCCTCCAGGGTTCAC---------------TGAGGCAAATT--GTTATAATCACCAAATGGACTTGGATTTCATTATCTTTTGCTGTC------------ACACTGCCACAACTGGCCAGAACTGGTACC-AGGTTAGC-GATTGCCCATGGAGCTCCTGTATAGAACATACAAGCTGCTCATTA-TGTGCACAATATACTTCCTTCTTCTTCCTGGGGCTTCTCTTCCCTGTCTCAAAGCAGAAGGAACAAGATTTTCCTAAGAAGCATTTATGTCCTGAAGTAGTCAGCTCTTTGAACATTTAACTTCACC-CCCACATCATTACCGAGAAGCAGCTCATGGCTCTGGGCCCAGACCTGACCCCTGCAGCTCCCATTTGCAAGGACTGTCGAAGGCAAATGAATCACTCACTACCAGTAAGTACTTTCTTCCTTTGGCTTCCAAATCTGGCAGTGG--CTGGGCAACAGTGGGTCATTAGACTTTTGAAAATTAAATTCCCCAAAAAGACAAATTTTACTAATGCAGTAAAGAGATGATTTGTGGTCCTGACAACATATACTAAACTCCAAGGACAAAAAATTTTTAATATTCATTTGGTTATTTGTTAAAATCAAGATGAAGAGTGTGCCAGAAATTGACCTTTCTCTCCACATCGATGTCCATTAGCTATCTGCTACCAAAAATAAATCTCGTGAGGGATTGGAGGGAGAAAAGGGCAGGGACTGTGtaattatattttaattgaaatttcttttaaaataatGCTCAGGCTTGCTGCAGGCTCTGGTGCAGTACGGCAGCCTGTTTCTTTTCAATTACATTGACTTGTAATCTCTAATTCCAGAATTATCTTAATCTAAATAGtctctctctctctctctctctctctcctctctctctctGTATGCAtatatatttatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatTCTTAAAATAGTGTGGGGTACAGTTTGTGTCTAAAACTCAAGTGCC
s HiC_scaffold_1 133205682 1082 + 233722169 AGATCGGCC------CTTGCTCTAT-GAAGAGGGATACATTT-CTGTTTGGAAATGTCTTAGCAttccacattttaatttcttcttcaagacAACCACATAACAGTAACATCCTGATCAGAAGCAAAGAAGTATCAGGTCATCTCCCTATTAGGAGGCAACCAGAGACTTCTCTGGATTCTCTGGCAAGGATCTCCATTGTTGA----CACCAGTCCGCTACACACTATGGTCCCCTGAGGTTCTGCACTTCCAAGTGATTGTAAGACACATGCAGCAACAAACACCAAATGACCTTGGCTGTGATcattttcatctctctctttctgtataATACTGCCACAATTGGCCAGAAATGGTACCCAGACTATTTAATTGCCTATGGAGCTACAGCATGAAGCTAACAAGCTATTCATTAATTCACCCGATGTACTCCCTCCA-CTTCCTGTGGTTTCTGTTCCTGGTTTAGAAGCAGAATTAACAAGTTTTTCCTAAGAGGCATATCTGTCCTGCAGCACTCAGCTCTTTGAACATTTAACTTCATCGTCCAAATCATTATAGAAAA-CACTTAATAGCCCTGGGCCCAGACCTGACCCCTGCAGATCCCATTTGCAAGGATCGTCAAAGACAGATGAA----TCACCGCCAGTAAGCACATTTTGCATTTGATTTCCAAATATAGGAGTAGTTTTGGGCAACTGTAGGTCATTAAACTTTTGTAAATTACATTTTCC-CAAAGGCATATTTCACTAATACAATCAAAGGACAACGTGTGTCCCTGGCAGCATATGCTAATCTCAGAGGGACAAAAATCT---ATGTTCATGTAAACAGTTTACTGAGGCCAGATGAAGACACTGCCAACAATTGGTTCCTTCTTC-------ATATTCATCA------------------------TCATG------------------------------------------TCCACTTGGGA-----TTAAAAATGATGCTCAAATTTGTAGCACATTCTAATGCAATAAGCCACCTTGT---TTTTCAA--AAATCTATTTGCAATCTCTGGTTTCAGAATTAACTTATTCTAaggagac-----------------------------------------------------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcttcaCACTGGGCAGGAGATGAGTGGTATCTAAAACTCAAATGCC

a score=47799
s chr3           146645095 1546 + 160039680 TTTGAAGGCTTAGCCTTCTCCCTGTGTTTTGAAGGCGATGTTAATCTTTAATCCTCAAAGAAGGGACCAAATGAGAAGAAACTAAAGACATACTTGGTGAACTGAAATGATGTTTTATTGCAATCACCAATCACCAACTTGATGAGACATGGCCATACATCACTC--ATAAGTGTCTCTTGGAACAGAGATGGAGCAAACCTAC-TTCTTCAAGTTCTGAAAGATAGGTACTCAAACCAGGGACCAAACACAGCAGTGGACAGCCAAAAAAACAATTACAGCATCATGGAGGGCtatatatatatataaacaatataaaatatataaaaataCTCTGTGCTATCAACAAAGCTCTGGGACCAGCTATTAGCTCTTGGCAAAATGCTT-CAAAAAGaaattattataaatataaatcataaaaaatCAAAGTAACAAAAACAAAACAAAACAGTGCTTTCTTCAGCAATAGGGAACTGACGTAAGCAG---------GAAATATTCTTACCCCGGTGACAGTGAGTTGATCACG-ATAGATATCTCCAGTGCAAAACA-AGTCTCTCTCCTCAGAG--AGAGTTCTGCTCCTGAAGAGGGGGTCTAGTGCGTGCTCGATTCAAACACAGCGCAGCACATCCCTGTGAAACCTTAACAAGGTCAAGTGGAGAACCCTCTACAAAAAAGGGTATTGGCAGTTCCATCCAAAGAACATATG-TCTA-GGAGCAGAGCGACGACTCCAGGGAGAGGGCAGTcctcctccctcctccctcctttcttcctccttcctttcttcctccctcctcccttcctcccctccCCAGAGAGCTTTGTTCATTCTCATTTCTAAGTCTGTAGCCCAAGGACACACATTCC----ACTTCTACCCTTTTTTAAGGGAGTTGATGGAAACCACTCTATGATGAAACAAAGAAAGTTCTTGTAATACCAAAGCCCCTGAGGGGAGGGGTACC------------AAAGCATCCATGACAACTTGGTTTGACAAGGACAACTATCTTACATCCGCTCTGTTTTTGCTCCTCCAGGCTGAGT-CAGGCCAGCTGATGGATTGCCTAGTCTATCCAATAGGATAACACTTTGTTGGATCGAAATTCCTTACGTACGCACATCTATGTAT-------TCCGTTTGCAGAGTTTCACAACATGAAACTAAAT-TACAACCCAGTGTGTTTTGA---CTGAGACCTCAGTTTGATTTTACTATGAAGAGTTGTTCTTTAAATGCTTGGTCTGAAGAGGTTTTACATGATATTCATAGATTTTCAGAGCAGGCCCCAGTTTTAGCTGAAGTCCTGTCAACACGTCATTTCTCGTCATCAAGAGCAGGGATTTTCCATCAATTTCCTAGAAGGGAAACAGAGGGGAAAGCCAGTGTGTGAGTAAGCCCAGGCACTCTGGGGGAATGGAGGAGATAAAGG------GAAGGCTGAAGTCACACCACTTGCCCCTCGACT-AAAACTACTGTCGTGGT------------GTCAAAATGCAATCTTCTATCGTATCTTCCATTTTCTCTTTCCGTTTTGAGATTAAAGCACAACTTGTAGCCGATATT---GTTTTCAAGA
s HiC_scaffold_1 133209514 1450 + 233722169 TTTAAAGTCtcaa--tttttctattgttttga----gaCTTTAATCCTTTATTCCTGAAGAAGTGACCc--taagaggaaatcaaaaacacTAGTAATAAACTGAAGGAATGCTTTATTGCAACCACAAAGCACCATTTCAACAAGGTATCAACACACAGAAATTGAACAAATGTCTCTTTGAACAGAGATGTAGCAAGTGCACATTTTTCAAGTTCTTAAAAACAAGTACTTAAGCCAGGAATCAAACAAAGCATAGGAcgattaaaaaaata-ttacagcttcatgaagagt-------------------------atatataaaaatattctatacCAATAACAGGCTTTTTTGATCTA----TAGCTCTTcgcaattttttttcagaaacaaatgaTTATAAATACAAGCCATACA--------GTAAAAAA---------------TGCTTTCTTCAGAAACAAAGAACCAATGGAAGCAAATCTATGCAGAAAAACCATTATCCTCATGATAGTTAGGTGAGTATGGATAGATATCCCCTGTATACAatgtaatttctcttttcagagcTACAATTCTGTTCCTGA-------------TGCATGTTCATTTCAAACAT--CGCAGTACGTCCCAGTGAAACCTTAATAAGGTCAAGTGGTGCACCTTCTATAAAAGAGGGTGTTGGCAATTCCATCCACGCAACACAAACTCTATAGAGCAGAGGAAT---TCAAAGGAGACAGTGat-----------------------------------tactttctcttttctccccttctcttctt-----------------atttttact-ctaagTCTG-------AAGATGCtcatttctttaactttt---ctttttaaagatgccTGA--GAAAACAATctatgaagaaatgaagaaaatcctTATCATCTCAA-GCCTTTGTGGAGAGGGATATCTAGCAGTGGCAGAGATCATTCTAGTCGACA-AATTCCGCAAGAAAAATCATTCTGTGCTTGTCTGGTCCTTGTTCCTCCTAGCTGAATTCAAGCCAGCTGATGGATTGCCTCGTCTATCCAATAGGATAACTTTTCATTTGGTTGAaattt-ttacatatacatatgtatgtatgtatgtattgatTTATAAAGTTTCATCACATGAAACTAAAAATGTCATCATGTATTTTGTGAGGCTTGAGACC-CAATCTGATGGCATTATGAAGAGTTATTCTTTAAATGCTTTGTCTGAAGAGGCTTTACATGATATTCATAGATTTTCAGAGCAGGCCCCAATTTTAACTGAAGTCCTGTTAACACATCATTCCTTGTCATCAATAGCAGGGATTTCCCATCAATTTCCTACAATGGAAGCAGAAGGTAAAGCCACCAT----GTAAGTCCAAAAACTCAAGGATaattaaggaa--aaaggaaactcaAAAGCAACAGTCATACCAGTTGTTCCAAAGTTGAAAACTACTTTTATAGTAGtgctaaaatggaaaaaatgaaatctttt----catcttc--ttttacttgtatgaggtgtgattgaaaaaca-----tagtggatgtttaaatttttaaaa

a score=47759
s chr3           146649997 1613 + 160039680 AACCCAGTACTTCTCACTGTCTCTGTCAGCATTAATCTACGGTGGAGGACATGCCTCAATTTGGACTTGATCATGATATGAACCATGGGAAACTCTTGGGGAGAGAG-------------AGAGAAGACACAAAAAGAGGTTCAGGGAAAGGACAGGAACAGTCAAAAGGAGGAGGCCTCTGTGT----------------GGGAAACAGCAAGGGCAGAGCACCG----------CGAGTCTGCTTT------------------TCACTGTGGCGTGGGATCCAG---CCCCCACACCCTGACTGAGGG--AAGAAAGCTCAGTT----TTGAGAAGAGTCTGGAAGGTCAGCTCTGCTCCTCACAGGTTCTCTGTGTTAACATCTGACCCACGACTCCCCTCCACAGTGGA--GAGAGCTTTGAGCTAACCAGCCCTCTGTCTATGCCATTCC------CCCTCAGATTTCTACTGTTTCCAACAGGCATCAAGACACACAAATCTCATTTGCAATTCCTGGTGAAGAAGACAATGGCAGGTCCTTACCAACCACGTGAAGGATTGTGACGAAATAGCCGTTCGTTCTCTATTT---TCTTTGGTCCTCGAATGTTCTCTACAACTCTCTTTGTGACAACTCTCTTACCATTCACTGTCTTGCTACAAGTGGTGACCAGTCTGAACTTTCCCATTCCTTGGCTTATATATGGTACAAATGTTTCAGGGTCATCAGAATAAGACCTGGATTCATGGGACACAAACGTAGAAAATCCTGTGTCCATGATGGGGGTGACAGTAAAGAATGGGGAAGAGGCTCTTCTGGACCCAGTAATGGGACCTGAGAACAAACAGTCTCCTGAGAAAAGGTCTTCATCTTCAGTGACCTTCTGGAAGGTGTGGCGTGGCCTCCGAGAGCATATTTTTTCTTCCCAATCGGTTTCATCTCTGCTGTCGTTAACTCTGATGGTCTCCCCTTTGTCATGGCCATCACCTCTGATTTCCCCTTTGTTTCGGTTCCATCGGGACCTGTCGTAATCCTTTCGCTTCTTGGCATCAGATAAGATGTGATAGGCTTCTGCTACTTGTTTGAATTTCTCCTCAGCTGCTTCCTTGTCTCCTGGGTTCTTGTCTGGGTGTACCTGCAGAGCCAGCTGATGGAAAGCTCTCTTGATATCTGAGGACGACGCATTCCGTGGCACCCCTAGTACTTTGTAATAGTTCACCATGTTTCTTTAAACAGCCTTGTCCCACTGAGATGCAGGGTTGAGATTTTGAAGAATTTCCATACAACTTCAGAAAGGAAGATGGTCACTTATTCAAGTTTACAGTTTTGAATTTCCTCACATGGTTTTTGGGGTGAAGCCTCTTCTGGT------GGAGAAATTCCTCTTCAGCGAATTGAACCTTCACACGCTACCACACCCCTGTCCTGCCTTTGGTCACTGTGGGCTGTGACTATGAGGTCATCACTTTAGCATCTCCCAGACTCTCAGCTGAGGTTCTGCCTGCCTTGTTTCCATAGTGGTGGGGAATCGGAGGTGGCCACTATAAAAACTGGAAAGACCTTCTCTGTTTCAAAGACAAACATGCACACAATCAACAAACACCCAGTGTCTTGTCAACAGAGAGAAGCCATTTGTGTAGCTTAAAAAGCATTTGCCTTGTTTGTTTTTAACAGCCACAAGCCA
s HiC_scaffold_1 133219835 1582 + 233722169 aacccATTATTTCTC--------TGTCA-CATTTATCTA--ATTCAAGATAACAAGCAATCCAG-CCTGCTTTTGATAGGGTCCATGTAAAATGAGTGGGAAGAAAGGGGGACTGGGAAGAGaaagagcaaagagaaagagcctgggagagaaaaagagcagCCACA--GAAGGGGCACCTGAGCAGCCACACAGCAGACCGGGAGGAAGCGGAAGGAGGTCATGGGATTTGTGAAAGAGTGTGCTCCAACTGGCCTGGAAGGCCCTGTCTCTGGCGGTGGTCTCAGGTATACCAGTGTGCAAAGTAAAGGGAAAGATGGCTCAACTGAGACTCAGAAGACTC-AGTTGTTCAACTCTGCCTCATGTTAGTTTCTTGTGTTAATATTTGGCCCATAATTCCCCTCCCCAGTGAAATGAGAGATCTGAACTAAGCAGACTTCTGTCCATTCCAGCTCAACACATTCTCAGATTCCAACTGTCTTTGAAAATCATGAAGACACACAAGTTTCATATCAAAGTCCCTTTACAGAACACACCACCAACTCCTTACCAAAGACATGAAGAGAACTGatgaaatagtttttctttctccacTTCAATCTCCCCCCCTC--ATATTTTCTAGAACCTTCTTTGTAACAACCTTCTTGCCATTTACTATCTGGCTACAAGTGGTGACCAGTCTGAAACTTCCCATCCCACTGCTTACGAAGGGTACAAATGTCTTTGAAATAGAGGGACTTGATCTAAAGCCGGGggatacaaaagtggaaaatCCTGTGTCCAATATGGGAGTCACATCAAAGAAGCAGGATCGGGATCTCTTGGGCCCATCCACGTGGCCAGTGGAAAAATAATCTCCTGAAAAGGGGTCATCGTCTTCAACAACATTAGCAAAGGCACTGTGTGGCCTCTCAAAGCACATTTCCTCTTTCAGGTGACTTTCTTTCCTGCT------------------------------------ACCTCCTCTGCTTTCCCTGTGGGTACAGTTCTTTCTGATTCTGTCGTAGTCACTGCGCCTCTTCGCATCAGACAAGACCTCATAGGCCTCTGATACTTGTTTGAATTTTTCCTCAGCTGCTTCCTTATTCTCTGGGTTCTTGTCTGGGTGGACCTGTAGGGCCAAATGGTGATAGGCCTTTTTGATGGTAGAGGAGGAAGCATTCTGAGGTACTCCCAGGACTTTGTAGTAATTCACCATGGTTCTTCAAACAGCCTTTCTCCACCAAGATACACAGTTTATGTTCTGAAGGATTGCCATAAAACATTGGAAAGGAAGATGGTGAACTCTTC-AGTTTATGCTTTCCAATTTTACCACATGGTTTTTGGCATGCAGTTTCttcagggagggaaggaggaattACTTTTCCTTCAAGAGCGCACCCACACTCCCCCACACTGCACAGCTCCCTGGGGT--------GGAGTTACTGTGAGCTCAGCAT-------TCCGCCAGTGACTCAG--------GTGCCTGCCTTGC-----TATTGGTGGAAAATTGG-GGTGAATATCATATGTCTTAGGGAGACCTTT----------------AAAagtacacaataaataaatactgacTGGATTATTGACAGAGAGAAACTATTTGGGTGgtttagaag----------tttttatttt-----gtcacaaGCCA

a score=9342
s chr3           146650462 693 + 160039680 GCAGGTCCTTACCAACCAC-GTGAAGGATTGTGACGAAATAGCCGTTCGTTCTCTATTTTCTTTGGTCCTCGAATGTTCTCTACAACTCTCTTTGTGACAACTCTCTTACCATTCACTGTCTTGCTACAAGTGGTGACCAGTCTGAACTTTCCCATTCCTTGGCTTATATATG----GTACAAATGTTTCAGGGTCATCAGAATAAGACCTGGAT--TCATGGGACACAAACGTAGAAAATCCTGTGTCCATGATGGGGGTGACAGTAAAGAATGGGGAAGAGGCTCTTCTGGA---------CCCAGTAATGGGACCTGAGAACAAACAGTCTCCTGAGAAAAGGTCTTCATCTTCAGTGACC-------TTCTGGAAGGTGT-----GGCGTGGCCTC------------CGAGAGCATATTTTTTC----------TTCCCAATCGGTTTCATCTCTGCTGTCGTTAACTCTGATGGTCTCCC--------CTTTGTCATGGCCATCACCTCTGATTTCCCCTTTGTTTCGGTTCCATCGGGACCTGTCGTAATCCTTTCGCTTCTTGGCATCAGATAAGATGTGATAGGCTTCTGCTACTTGTTTGAATTTCTCCTCAGCTGCTTCCTTGTCTCCTGGGTTCTTGTCTGGGTGTACCTGCAGAGCCAGCTGATGGAAAGCTCTCTTGATATCTGAGGACGACGCATTCCGTGGCACCCCTAGTACTTTGTAATAGTTCACCATGTTT
s HiC_scaffold_1 127993959 692 + 233722169 GCTGCTCCTTACCATTTATTGTTAAGGACTTTAACT-----GTCCATCTTCTTCAACTTCTACTCTTTCTTGACCATTCTCGACAATTCTCTTTGTGGTGATCTTTCTACCGTTCACGAT-TTGGTAGAAGTTGATATAGACTTGAAGTTGCCCATGCCACTGCCGCCAAATGAGGTGGACGAAAAT------------GAAGTGAGGCCCCCATGGCCCAGGGACCCGAACGAAGTGAATCCTGTATC---------------------AAATGCAGAAAATCCACCTCCAAAGGATGGAAACCCACTGAAGG---CGGAGAAAAAAGAG---CCTGTGCCACGGTTTCTCTCT-CGGGGACCCCTTCGGTTCCCAAAAATGTCTTCAAATGGGTCTTCAAAGAAGTCGAATGAAAATGACTCCCTTCCACCAAAAAATTCCCTGAAGACATCGTCTGGGTT-CCGGAAACTCAAATGGACTATCAAAATGACTTCCACCTCCTCCACCACCATTTAAGCCTTCTTTGCT------------GTATTTGTCATAGATGTCCCATTTTTTAGCATCTGATAACACCTCATATGCCTCAGCCACTTGTTTGAATTTTTGCTCTGCTTCTTCTTTATTCTCAGGATTTTTATCTGGGTGCCACGGTAGTGCCAGTTTCCGGTATGCCTTCTTGATGTCCTCAGGGGAGACATGTCTCTGCATGCCTAGAACTTCATAGTAATCCACCATGTTT

a score=34887
s chr3           146658684 1503 + 160039680 gagctacttcgattcttcta-gaagggcactaatcctatcatgggcccccatccttaggatctcatctaagtctttctcccaagagcccttat--cctaggatgatcccatgtagtgttaggtcttca--ctaggggtcgtatggagaactcaaacatccaggctgtagGGATTGGCCCTGAAGCAATGTGCTCCCCAAATCACTGGCAACTATGCTGCCCACTCGGGACCTGTTCTTTTCAAGGGTGGCTT-AGTGGTTGTTCTCTGTCTTTGCATGGCTCCTGCCAAATGGCAAGGCAAA--------TCTAGCACTGGGGAGACGCTAAAGATGTT--TTCCTATGGGTTTTTCGGTTGCTATGACCTAACAATGTACCTGAAAGGGACATGGCTTTGGGCTGAAGATGACCTTCAGTGTTCATATCAGGATATACCCAGTGAGTGCTGA------------CATC-----AAGGTAACTGCCAGGGAGATGCTAGAAGCAAGACT--CAGGTGGAAAAGTCAGG-TAATGTGTTAGAGGACA--TG-------------CCTCCGTCCACATGAA--TCAGAGCAG-GACGTGGCATACCATCATGTGACAA------GACCCCCATTTG------TAATCCCTTCGACGGGAATGAAACTATTAGAGG------AGGAAA---AAGAGCTGAATCACGTCCAGAGATGAATTCAAGGCCCACTCCTTGCCCACCAAGCCACACTCCAATGGATAAAGGAAC-TGAATTTCAGGACGGGCACT-----------GTTTTCTGAGAATTCGTTTATCAAGGTC----TAGAGTTGGCAGACT-------------AGATTCAGCGGTGT----TGTGAGGGATTTCTCAATGACATGTTCCAATTTACATCTCAGTGTTCCCCATG-CCAGAATGAGGTCATCCCTGGGAAGAAAATACCACTGCTGGGCCAAGCTCTGTGCTGGCCAATCTCATTTGCAGGGTTGTGTGCGGAATCTGCAAGGCCCACATAGCATGTTGTGCCCTCACCTGGGGTGTCTGGC----AGTAGTCTGCGCATAGATACAACCTGGGAAGGC-TCTGGGCATC-AGGAACCTGGCCAGAAAAGCTTTTATTTAAG-----------------CCCCCCTTTTTT------GTAAACCTTTTAAGGTATTATTTAAATTTAATTTCAGAAGAGAGCTACTCAATTACAATGACACAAATGGACATTGTACCATTAAAAACCCAAAATAAAATATGCTCTAGACATAATAGTTTCTACTTTCAAACCTGAGCTATTATTTTCCACTAGAATTTTATTATAAAAA-TTTCAGACATGAGGAA-------AATAACTTTCT-GTGAATACGTACA-TCCTTCCTCTTAAATTCTACAATTACTATTTTCTAAACTTACTTCATtatatatatatatat---------------------------atatata---tatatatatatatatatatatataATGTCA-------TTGTTG--------------AGTATTCTTGTAGTTCTTTTCCTTCTCATATAAAATGTATAGGCTATGAAACATAAAGATATGAGTAATTTGAACAAGCCAGTGTCCATGCAGTGGCTACATATGTAGACACCGACAGTCCACAGTCTGATCAGGAGACAGGG
s HiC_scaffold_1 133229354 1658 + 233722169 GAGCT-CTGTGGCTCTTCTAAGAAGGGAACTAGTCCTGTCATGGAGCTCCAACCTCAGGACCTTATCTAAACCTAACT------ATCTCTTACAGCTGAACACTATCACACTGCAAATGAGGTTTTCAAATTAGGAGT--TTGGGAGGACACAATCATTTGCTTTGTAA----TAGCCATGAAATAGTAATCTCCT-AACTTACTGGCAAGTGCACTGCCCTTTCTGAATTTGCTCTTTGCAAAAATGGTTTTAGTGACTTTTCTCTGTTCCTGTCCTAATTCTGTCAAATGGCAAGGCAAAATCTTTCCTCAAAGATTGTAG----GATATGGATGACCATTCTTACGGATCT--CCATGGCTACGTCCTAGAAATATGCCTGGAAGGGTCATGAATTTAGGTTGAAGATGGTCTTTAGTTTTCTGGTCAGGATACATTTGGTG---GCTGAAAGTTATCTGGCCATCTGCCTGAGGTCATTGCCAGGAAGATCTTAGAAGTGAGACTGGCCAATGGAAGAAGCAGGTTAATATGAGAGAGGGCAGCTGTAGCAAGGACGATTCGCCATCCTCATAAAACTCACGGCAATGACCTGTCCTTCTGGCCTGAGCCTAACCAGTGATTTCCACCTTACCCTCCATTTCCTTTgatgaaaagaggaaaagcaatggtcatttcagaaatttaaaacttgAATAATTTCCAGGGAATAATG-ACAACAGACTTTTCACCCACCCATAGATAA------GAATGATGGAACTTGAATTTCTAGACCAGGATTGCAAAATGTCAGTCTTCTGGGAATTCATTTCCCAGACTCACCACTGGGTTGGCAGACTCATCACTGTAGCAAGAT--GTCTGTGTCCCCTTTGAAGGATTTCTGAATGAAATGTTCCTCTTTTCATCTCAGCATCTCTAGTGCCCAGAATGATGTCATCTATGGG-AGAAAAGCTGGCTCCTGGGACAAGCTCAGAGCTGGACAATTCCGTCTCTGAGATCATGCACAGAATCTGAAAGGTCCAGAGAGTACACTATCTTCTAATCTGGGACATCTGCCTTAGGGGAATCTGAGCAAAAGTTCCACCTGAGAAAGCTTTTGGACATCTGGGAATCTGGCCAAGAGATCAATTAgctaaatatcttttctttctctctctctctttttttttttggttaaccttttacaatattatttaaatttaattttaagaaagactTTCTCAATTGCAATGACCCAAGTGGACATTATACcattaaaaa-tcaaagtaaaatatgTTCCAG--CTGATTTCTTCCACTTTCTGACTTGAGCTGTTATTTTCCACTACAATTTTATTGTAGAAATTTTCAGGCATAAAGAATAGTTGCCATAGTTTTATAGTGAACATATATATTCCTACCACCTAAATTGTGCAATAAATATTTTCCA----TACTATCTTATATACCTATCCATGCAGTAAAATCTCTCTTTAATTATTGAATTTACACTTTGAATGCATATGTCAGTACATCTGCTTTCAAATACATTAGTTGCCAAACTATGCTCCAATATTTTTATACCTACTTTCCTTTTGAGGTAAAACTTGTAGACTATGTGATGTGCAAGTACAAATCA-CTGAGTAGACTGGAGTGTACCTAATGACCA---ATGCAGTGACCTGAAATCAAATCCTTCATCAAGACACAGGG

a score=37186
s chr3           146662656 1800 + 160039680 cccggctGAGTTACCTGTTCTTGAAATGCACAGGCTTGCTCCTCAAATCCTGCTGTTCGGAAATAATTGACAACGTCCGTCACGGCCCAGTCTGCAGGATCGGGAGGCCTCCCATTTTCCATGGAACTGCAAAATACAAATCC-------TGTCAGAGTGTGGCGTGTGTGCAGGTAAGCACAGGCTCACTGCCTTGCGTCCCAGGGCTGGTCTGAGCCAGCTCACCAGGAGCCTGGTGCTCATTTCCCTCAGAGTC--CATCCAGGTCTACCCACGGAAGGACTCATGATGTTTCCTCTGTGTCTTGGTTTCTTGTGATCACTACTCCTGTTGGTGCAGCCAATGCTTTCTTAGTGAGGTGTTTGACCTTTAATGAAA-------------------GTGATTCCCACAAAGACCT--------------------------------CTTCTCTACTCATTTTTGATA-----------------------------------------------------------GGCTATAGCTTAATGTGTCTATTGTAATTT-CAGTATGAATGTTCATTGTACAATGTGACTCAG--------AAAGCCATTCCTTTAGACGGCCTC-----------------------------TCTGCTG----------------------------CATTCTGCCCC--CCTCCT--TATGACACTCTTTCTACCT------GATGAAACCTTACCATTCCTACCTATTTAAGGGTCGCCTCAGTGCTAAGGTACTTCCCGGCACCACAAGGAAAGTACTTAAGTTATAATCTGCTCTGAGATCCAATACTCCATTCAAATTATCATCATAGTACCTGTCATACCAAGGTA-------AACACTTTTTTCAGGACTCTAGTGAGAGATGT------GGATCAAAGATACACATGTGAACCTGG-CTGGTTCTCACTGTAT-TATTCTGAGCGTCAAGCATGTGCTTAAGGAAGTCAGTCAACGTTGTTCAAAATGAATT-ACAGTGACTAGGGAGACGGAATAAGGCAGCTGTCTGAGAGGC-TCAGGTA--ACCCTTCTCAGTAGTTCAGAGAGCTGGGA-AAAATGACAGAAAGA----------AAAGCAACAGTGCAGCATCTGGGACGATCTTACTTCAGGTGGGTCTGTCTATACCTCACCCAAGGAG---TTCCCAGAAGGACCATCTGATCTCATTGTTTCTCTGATT-AAATCCTTCAAAGG---CCTTCTGATCCTGTGGCAAGTGTCTACAAGCTTAACGGAAGTCCTTCAGGACAAAGACC-TCCACCTTTCCAACTAGGAATGCATTTGGGAGCAAAAGACAGA----GCAACCCCTGTCTATGT---GCCTCCCAGTGTTCTGAGAGGACAATGACCACCAA-CAGAC-TGTGCCCGTACAGCTGCAAGATCCTCCAAAAGCTGGGAAGAGCAAAACCTGCACTGTGACA-----------GGCCATACCT-----AGACCGTTTCATCTGAAGCAAGGTCTGAAAGACCATCAGGGGTTGAC--TATAAAGACATCAGGTGAGGATTATTCCAAGATCTGTGGTAGGGATGCAGCCAGCCAAGGAGCCATGACAGTCTTGGAGACCACACTGAGGATTTCGGACTTCTTCTAAGAGAAGCAGGAAGTTGGTGAATGGCCTTATGGGAAATGGTTAATGAAGTTGAGGCACATCTAG-------------AAGAGTACTAGAGAGGAGGGAGAAGGGGAGACAGGGCGTGGATGAGAAATGTACGATAGTCATCTCTGCGGG---TCAGGAT--CTCAGACAAGAGCACTGGCT------AAGAAGAACAAGG-------TGCATGCCTTAAAACAGTCAAC-AATAAAATCAGCACTGCTTGGTGGCGGGTGAGACACAGAGAACACAGGG-GTAGACATGCCATGAAACTGAAC-GATGATGGTGCCTTCAATGGCACCACACCCCTGGGTTTTTGTCACG-------------------TTAGGGT---TTAATGGCTCTGGACTCAGAGTAGAGGGGGGAGCTGGAGG---ACATCTGGGAGGCAGAG
s HiC_scaffold_1 133232365 2039 + 233722169 CCAGGCTGAGATACCTGCTCCTGAAAAGCACGGGCTTGCTCCTCAAATCCTGCTGTTCGGAAATAATCCACTACATCCATCACGGCCCAGTCTGCAGGATCAGGTGGTCTCCCATTTTCCATGGAACTGAAAAACACAAATCCAGACAATTGTCATAGTATAGTATACAGGGACATGTGGCCAGGCTCTCTCTTTCATATCTCACTGCTAGTATGGGCCAGCTCATTGGAACCCTAGCATTCTCTTCCCTCAGAAGCATAAAACCAGTCTACTCCTGGTAGGACT-ATGAT-CatcttttgtttcttggtttcaGATGAGTA-TACTTTTACTGAGTTAGTCATTGTTTTCCTAATAAACTATTTCACTTTTTGTGTAATActttttttcctgtgctggggattgaactcaaggccttgtacATACTAGACAAGTGATCTATCATTCAGCTACATCACTAACCCTTgacatataaatttatttcttcacaTTCTATTTTTTAAGCCAGGGACATTGAGAGGAGTCCAGTGACTACAGCTTGACATGCTTACTGCAATTTGTGGTATGGATGTTCACTTTGCAGTATGACTCCAGCGTACCCATAGTTATTTCCCCATCCCACCTCCATGTATCCAAAGATAAAGGTCTTCCCAATCGGTTGTGCCTTTTTATAGATCTGGACCTTTGAACATTCCGTCCCAGACACCTAGAATGACCCCTCATCTAACTTTCCACAATGAAACCCTATTCTTTCTACCAGTTCAAACTCCACTTCTTCTTGGAGGCATTTTCAGGCATCACCAGG-AAGTGATGCAGTTATAACCTCCTTTGAGTTCTAGCACTCCATTCAAATTCTCACGGTAGTACTCTTCACACTGGATTACTCTCTGGATAATCTCTCCC--ACTAAGGTGGGATATGTCAGCTAGAGAAAGAGATACACATCTGAGCTTGGACcacttctcattttttaaagtccTAGTGTCAAGCATGTTCTT-AGGAATCCAATCAATATTGTTC-AAATGAATTAACAGTTGATAG----------TCAAATATTTGTCTGAGAAGCTTCAAGTATTACCCTTGTCATTGATTTAAAGAGGagggataaaataaaatgaagaaataagagtGAAAATAACAGTGAAGTTGCCGGGAC---TCTGCCTCATTTGTGTT--TCAGGATTATTTCCAAGGTGATTCTCCCAGAGCACACATTTGATCACATTGCTACTCTGGCTAAAATCCTTCAAAGACATCCTCTTACTCTTAGGACAAGTTCCAAACAGCTTAA--GCTGTCTTTGCAGCCAAAGGCCTTTCACCTCTCCATCTAGGAACACAATTAGAGAGCAAAGACGACCTATGTAGTCCTCATCCATATTACACATATAAGCCTTC----AGGACACTGACCGGTAATCATACAAGTAAGTGTACAGCTGCAAG-TTGTATaaatactg-------------ttgtatcatgacacTTTAATGTCTGGGGATGCTTTCTTGCGGAAGTTTCCTTTGAGTTCAGGACTACAAGGCATTCAGAAGTTAACTGTATGAGGGAGTCAGGTGACAATTATTCTAGGCTCAG--------------------GAGGAGCAC--ACAGTCCTGGAGGCTACACTG-GGTCTTCTGAATTTTATTAAGAGAAATGAGAAGTTGTTGACTAATCTTATATGAACAGG---GTGAATTGAAAAGAATTCTagtttgaaaaaaagagagggcATTGGAGAGGGGTCAGAGGAGATGGAAAGATATGAATGAGAAGTTTATTAAAG-CACTTAAGCAGGAGATCATGGTGACTCAAGCTAGAATGATGGCTAAAGGAAAGAAGAATggggattttaaaatattttttaaaaaattcaataaatgaaaGCAGCACAGCTCAATGGTAGGCTAGACACACGGAATAAAGGGAATGGAGGTGTCATGAAACTAAGTGGATGGTCAGACCTTCACTGAGATT----------GTTGTTGACACTCTGAACTACAAGGAGAGACTTAAGGTGGGCTAGGAGTGTGGAGCTCAAGGGAGAGGAGTGAACTAGAGGTGCAcatctgggagacagag

a score=110597
s chr3           146677372 8810 + 160039680 [encoded data, 9596 characters]
s HiC_scaffold_1 133250431 7946 + 233722169 [encoded data, 9596 characters]

a score=42473
s chr3           146696120 1247 + 160039680 TTGCAGTACATTGAGCTCCATAGAGACAGCGCCAGGGCAAGCGAGAGCCGGACCAGCATTGGGTGACTCTGTGCCTTGCGGAGGAAAATCAACGAAACACGGGCAAAGGAGATCCTAAGAAGCCCAGAGGCAAAATGTCCTCATATGCGTTCTTTGTGCAAACCTGCCAGGAGGAGCACAAGAAGCAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGTTAAAGAAAAGGGGAAATTTGAAGATATGGCAAAGGCTGACAAGGCTCGTTATGAAAGAAAAATGAAAACCTGAGTCCTTTCAAAGGAGACACCGAGAAGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTCTTCTTGTTCTGTTCTGAGTACCGCCCCCAAATCAAAGGTGAGTATCCTTGCTTATCCATTGG------------AAAGGAACTAGGAGA--GAGGTGGAACAATACTGCAGCAGATGATGAGCAGCCCTAGAGGAGAAGGCTGCCAAGCTGAAGGAGAAGTACGGGAAGGATATTGCTGCCTACAGAGCTAAAGGAAAACCTGATGCAGCGAAAAAGGGGGTGGTCAAGGCTGAAAAGAGCaagaaaaaga-----agggagaggaagatgatgaggaggatga--------------------------------agaggaggagg-------cagatgaaga-------------------------------------tgaagaagaTGATGATGAATAAGTTTGTTCTAGTGCAGGTTTTTTTCTTCTCTATAAAGCATTTAACC---CCCCTGTACACAACTCATTCCTTTTAAAGAAAAAAA-CTGAAATGTAAGGCTGTGTAAGATTTGTTTTTAAACTGTGCAGTG-TCTTTTTTTGTATAGTTAACACACTGCTGAATGTATCTTTAGATAGCCCTGTCCTGGTGGTATTTTCAATAGCCACTAACCTTGCCTGGTACAGTCTGGGAGTTGTAAATTGGCATGGAAATTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATTAGCTGTATATGGGGACAGTAGtttgttttttgcttttttgttttgttttttgttttatttttgtttttttatttttttttcttCAGTTGTCTCTGACGCAGCTTATACGAAGATAATTGTTGTTCTGTTAACTGAGTACCACTCTGTAATTGCAAAAAAAAAAAAAATGCAGCTGTTTTGTTGACATTTTGAATGCTTCTAAGTAAATGCAATTTTTTATT-----------AAAAAAAGAAATAGATAAGAATAAAAAGAAA
s HiC_scaffold_1 115382728 1258 + 233722169 TTGCAACACCTCGAGTTCTGTAGGGACAGTTCCAGGGCAAGCAAGGGCTGAA-------TGGGCAGCTCTGTGCctcacaaaggaaaaacaacGAAACATGGGCAGAGGACAGCCTACAAAGCTGAGGAG-AAAGTGTCATTGTGTATATTCTTTCTACAAACTTGCCATGAGGAGCACAAGAAGAAAGAGTC-AATGC----ATCAACTTTCCAAAGTTTTCTAAGAAGTTCTCAGTAAGGTGTCATGCCAGgactgcaaaagagaaaagaaaacctgaagacatagcaaaggcccatgag---------gaaagaaaaacaaaagcttaaaCTCCCtcagagaaagca---aaaagaagttCAAGGAACTTAAGGTATGCAAGAGGCCTCTGTCACC---CTTCTTGTCCTGTCCTCAGTTC--ACCCCTAATCAAAGGAGAGCATTCCTGCCTATCCGTTGGTGGTGTTCTCACAAACAAAATTGTAAAACGTGGTGGAATAATACTGCTGCAGGTGACAGGCTGCCTTC----AGAAGGCTGCTCAGCTGAtggaaaaatgcagaaaagataTTGCCGTATGCTGAGCTAATGGAAAGCCTGATACAGGCAAACAAAGGAAG---AGagctgcaaaaagcaagaagAGGAGAcggaggaagaaaaagacaagaaagaagatgATTCCACTGGTCACACTGGCCACTGGGGAGACTAAAGTAGAAGGAACACTTTAGCCCAAGAATTCAAGGCCCCTGGAcaacatagcaggaccctgtctcaagaaaaaatataatatttaagtgGGTTCTAGCACAa--ttttttctcatctataaagcaTGTAAACTATTCCCCACACTcaagtttctctttttaaagaaaaaaagattaaatgtaaGGCTGTGTAAGATTTGtttctcagtggtagagtgttctCTTTTTGTGTA--TAGCACACTACCAAATGAGTCTTTAGAAAGCCCCATCTTCTCTGTATTTTCAGTGGCCTCT-ACACTGGTTGTTACAGGATGAGAGTCATAAGTTGGTATAGACATTTAAAGTAGGTT-GGGTTGATACACAGTACAAATTAATTGTATATTGGGGA------------TTGGc----------------------------agggtttttatttttcccttttaatttggCTCTGATGTGGCTTATACAAAATAAA-------TCTGTTAACAGAAAATTACtctataattg-----aaaaaaatactgaagct-TTTTATTGATGTTCTGAATgcttttaagtaaat----tttttaatttaacaaaaacgaaagaaagaaaggaaggaagaaagaaagaaa

a score=18234
s chr3           146698751 671 + 160039680 TGCCTGTCATTCACCTGGCTGGCTGAATGTGGATGAATGGATAACCTGGGCTAAAAGAAATCTTAGTTTAAGTGGTTGGGGAAAAGCCAGAC---------TTTGAATTCAGATT--GCATGTCTGTGCTGAAGATCCACCTCTTGCTCTAATTAGCTGCTAAGCCAGGAAAGTTCCTAGAGAGGAAATCACATCCAGAAGTG-TTAGTGTGGCGAGGGGGCTTCTGGAGTGGTCGCGATGATGCCA-----GCAACCAAAGTTGCAGATCAGCCGATGGAGTGGAAA--GATTCGTAACACAGAGGCAGTGTGACTGTCAGCACGAGCTTGCTTGGTGGAAAGGCTATCTTGTCACGCGATATGCATCTCAGCTCCTCTGATGG-AAGATGGGGCTTTGTTATCTCTGGGAGCAGCTGTGACCAGAGGGATTGATGTG-----GGCCTCGGTCTCTGTGCAAACGCCTGCCTGCCGCTTGCCTTTTGGTTTGTGTTGAAGGCCGCTGGCTTCTGAAAATAGAACCTCATCCTGCCTCTGACTCAGTCCAGCTTCATTTCACTTTCTTTCTGGTCCATCAGTGCT-AAAGAATCAGTTTGTCTCTGGCTGCCGGCTACGTGCACTGAAATACAtttcttttctttttct-----------ttccttttttttt---------tttttttttttttttACAAATTTTTGAAATTATTT
s HiC_scaffold_1 133270295 696 + 233722169 TGTCTGACACTCCTCTGGTTAGAGTGATATGGATG----GGTAGCTTGGGTTGAAATAAATTCCAATataac-------agaaaacacacacaaaaaaatattttcagttggaGTAAGCAGATTCTGGCTTGATTTCTGCCTCTCCTTCAGACTAGTTCCTATGATAGGAGGGTTTCTGCCCAGCTAAGTCTTTGCAGGGATGCTTAGTATGACAAGTAGGCTTCCTGATGGGGTACAGAGGGACCACTTTGGCACCGGAAGCGTCAGATGAACAAGGAGAGTAAAAAAAGAATCTGAACTCCGAGGCTGGGTGCCAGTTAGTGCAAGTCTTCTTTGTGGAAGAACTGTATTGTCATGCAATATTTATCTTAGTTTCTCAGATGGGAAGATAGTGATTTGTTATCTCCATGTGCAGCTGTGACCAGAGAGATTGATGTAAGTAAGGACTTGGTCTCAGGGCTAACATGTGCATATTACCTGACTTTTGGTTTATATCTAAAGCTGCTGGTTTCTGAAAATAGAACCCCGTGCTGCCTCTGACTCAGTCTGTTTTCACCTCATGTTGTCTCTAATATGTTAGCTCTAAAAGAATTAATCTATCTCTGAGTGTTGGTTGCATGCCC----------CTCCTCCCTTTTGCTAAGTGTTGAAATTTGTGCATTATTACCAagagaattgttttcctttttattaattcCTGATATTTTTT

a score=25362
s chr3           146704326 1214 + 160039680 tgcacactgctaagtgagagaagctggtct-aaagggcagcatccagaaggaccattgtgcagaactccagccgtgtagaacccagtattctggaaaaggccaaactaaagaaggaatagatagatggctgcttagcagagatgaggagaaaggaaag-----acaagtggaacacagaagacgtttgagggttggtgaaacttctatgcg-tactctaatggcgtctccttgtcattgtaaagctttccaaacccaaagaccagacagtacaaagaacagaaccttctcataaa---tggactttggggggtgatgatgtatcaatgctgatttatcagttgtcat-----taccactg--------------------cgtggtcggagctgtggaaacataggg----------ccgctcaccgaaggccagga-atttatatgaaa--ctggcgtctcttgttcagtgttactgtaaaccgaaaactggtttggaaaataaagtcttatctcaaaGGGAGGCAACCAGCTGGTTTTACGATCAGTTAGCTTGGGAAAGGCAAACTTATAAACCTTCTAGGAAAATTGTCT------------ACCATTTTAAAGGGCAGGGGCTGGGTAGGTGTGGGCTGCTTTTCCTGCCATGTAAACAAATGGCCCTGGCCAGATGTGTTAC--AGACTGGTGTGTGCAAGCCTCTCCCACACTTTTACACAAGTCAGTTATTTTTATTCCTAGGATAGATCTAGGGTGGGATGTTCTTCCTACCTTCAGAACAAACATTTGGGGACTTCCAGGTCCTATTCTTATTGACAATTTTACAA--TGGGAAATTCCTCTTCAGGGGAGAGGAAATCAAAGCATGGTCAT-AAAATTAGGCTCAGAGGCGCATAAA----------------GAGGCATCCTCCAGCTAGACCTTCA-TGCAGACTTG-----CCCCTGTACAGCACACC-------AGAGCAAATCAGAGCAACTCTGCAACCCAACATGGCATGCAACCTTCAGGGCATAACAAGACAAACTGAGTTTGTA-----------CTAAAATCCCACACAGGA----AGGAGGCCCCTGGAGATGAGTCACACAGACTCTCAGGATGAA-------------GCCCTGCATGGTGAGAACTGAACATACTTTGAGGTGGCTTCTAGGAACCCAGGCCTTGAC-CCTGGGAGTCGTCAGAGC---------------ATCAGGAAAAGCTCAAcctttatctctcttttctgct---------taaaaagggttgcaatt-tggattctttccctctgtctgtgagata----tacatgggtctgctacaactcag
s HiC_scaffold_1 133295373 1290 + 233722169 TGCatattactaagtgaaataagccagtctgAAAATGCCACATATGGAAT-------------AATTCCAAGTatgtga-------cattctggaaaaggcacaagaatagaataaatA-----------------TAGAGATTAGGAGAAAATAAGGGTTGAATAGATTGAACACAGAAAATGTTTATAGCT--------ATTCCGTATGACACTATAACTGTGGTTCCATGGAATTATGAAGTTGCCCAAACCCATAGAAGATACAACACCAAGAGTA-AACATTAATATAAACTATGGACTTTGGGCGATAATAACATGTCAGTGTAACTTTATTAATTGTAACAAATGTAACATTGGTGGAAATGTTAGGTGGGACTTTGGTGGGAAATGTT-AAATACAGGGGATGTTGAAAATGCATGTATGAGGATAGGACATTTATAAGATATCCCTGTGTCTTCTGCACAATTTTATTGTAAACCTAAAAGTGCTCTAGCAATAAAAATCT-ATCT-AAAAAAAGCCA--CATCCTATTTTATGATCAGC-AGGTTGGGAAGGGTAAACATATAAATCTTCTGGTATTATCTTCTTTGTTTAACTTCACCTTTCTAAAGAGCACCAGCTGGGTAGGTGTTGGCTGCCTTTCCTAAAGAGTAAATGACTGACCATGGCCAGGTAGGCTTCTCACACAGGTGTGTCCAGGCCCCTCCCACACTTTTACCCAAGGCAGTTACTTTTATTCCCAGGATAGATCTGACATGGCATGTCCTTCCTAT-----GAA--------GGAGGACTTCTAAATCTTACTGATCCTGAAACTTTTACAATTTGGGGTGTTCCTCTTTAGAGTAATGAAAATcagagtaaaaatataaaaattaagccTAGAGAAAGTTAAAAGAGATCCATATAATTGAGGGAGAATAAAACTGAATCTTTATTGCATTCATGAAAGATCTCTGTACAGCTTTCTCATTTTGGGAGCAAATCAAAAGAACTCTGTTAACTCACATGGTCTATACTCTCT--GTATTTATTACACAATCTATATTTGtagacaaacaaagaaaaattcccaCATGGAATTTGATTATGTGTTTGG----GAACTGCAGAAACTCGCAGGACAAACACGGTGTTCAGCGCTTTGCACTATGAGACTTGACTGTACTCTAGCATGG-TCCTAACTGCCTGAACCTTGTCACATGGAAGAC--CAAAACCCTCTTTGAGTCCTTGTGTGGAGAAGCTTAGCCTCTATCCTCCCTTTCTTATAGCATTTACTAAAAAGCATTGCAATTATGAATTCTTCCCCTATTCTTTCAAGATAAATGTACATATGTC--CTAAAACTCAG

a score=26134
s chr3           146719169 1345 + 160039680 TCTGTGCACAGAG-CTTCCTGAGTACAAAGCCAACAgagaggaaaatgaagaagaaagagggactatgaggagggagaaggaaaagaagagaacaaggagaaaggcatgatgaaagacgggaaggagagagaaaggcaggcagagatagggagaATATTGAC----------TGTGTCTCTGAGGTGCAGCCATGCCTGGAGGTTT-------TCAGATGCATGGGTTGATCAGTTCTCCTTTTTACTTT-----------------------------GGCTGGTTGGGTTTTCTGTTATTCACAACTAAGGAAGA-TAAAATTTACAGTGGCATCTGGACTTTATATGTCCCCAAGAAAGGACAATGC----CTGTGTGGCGTGTTGCCAGAGCTAAGAAGAGTCCCTGGTACAGGCTAGGTGATTGGGTTTATTTATTGATCAATCCCACCTGGGCTTGGGCGTGGTCACATTGCCTCCATCATCCCTGTCTTTGTTCCATTTATTTTCTGTTTTCTGTGTTTCAGGTCTCTTCCTTTCTTGGATAAGGTAATTGCTGAGTTCTCTTTAATCCTGGAAATAGAAGCAAGCAAATGACAACATAAAAAAAATCTTCCTTCATTATGCTGGTTGTTTCTAGCTTCTTGACCTACTTTTCCATCTTGTCTGAGATTTTCTAAGGCATGATATTAACCCATTGTAGCAGGTCTTCTGCTGCAGCTCTTTTGAAGCTGTTCTAGTAGTTGGGACCTAACCTGGATGAGAGCGTGTGGCATGCTGCCAGCTTCTCTTCCTCCTTCCCCTCAG-GCTAACGGACTCCCTTCTGCTTAGACAGCAGGACATGTCTCA----------------GCTTCCCAGATCTTAGCTCTAAGATCTTCTGTGTGTCTGTAGCTCGTCCTGGGATTCCAGGCACATGTTAACATA-TAATTGAAGTTGTTTGTTTGTTTATTTGTGTTTTTCTCTTGCCATCTCTCGATGGCACTACCTTCTCTCTCCTAGGCCTCAGTGGTTTTCCTCAAGTGCCAAAATACATCAATCCTCCATCAAACACCATGTCGAGGGGCCAGAAGATATCACATTATGACTTAGAGAATTATGGT-------TGCTAC---------CTCAGCCTTTCCCTTTGATTAGTGC-------TCAGCTCCTGTCAGA--CCAGGCTCTGAGGATAGCTCAGAATTGGGGATATGCTCTGCAGTAGTCACAATTAAGAGAGAGATGTATTTCATTTGACCTGGGCTAGTGGGCCACTACTGAAGGAAGTTTCAGGAGAGGAAGTATGAAAGGGAGTTTGTCACACTGATTCAG----ACACCTCTTCATAGATTAATCCTGGCT-GTTCTGATGCTCTGACAAGCCGCAGAAGATTCCAGACATCTAAGTAG-----GGCTCCAGCCATAGGACAAATT
s HiC_scaffold_1 133307970 1338 + 233722169 TCTATGCATGTAGGCTTCCTGAGGATGGAGCCAACAGAGAGGAAAGTGAAtttgaaagaa-----------agggaaagggagact--GAGAAAAAGGTGAAGGG-----------------AGGACAAAGGAAGGGAAACAGGGAT-GGAAAAATCCTGATGACATTTTATTGAATCTTTGGAG-GCAGCAgtatcttggtttttatttttttctgttatacaggctagttacttttctttttttttttcttttcttccttcctttctttctttcttaaactgATTAGGTTT-CTGCTATTTACAACTAAAGAGAACTGAAATAAACTGTTAA---TGGACTGTAAATATCATTAGGAAATGGCTGTGCTTGTCTGTGTTGTGCGTTACCAGGAGGTAGGACAGTGCCTGGAACATGGTAAGTGCCAGG---TAAATATTTACCACTAACCCCTGTGACCGATGCTGATCCCA-------CATCATCTTCAGCCTTGTCACTTTATcactttatttcttatgttttaagTTGCTCTCTTTCTCAGACAATAGATTTGCTCAAACCCCTTTaa-cctaaaaatagaaacaaacaaa--atgaaagaaaaaaagtcttcctTTATTGTGGCATTTCTTTCGGGCACTCTGACCTACTTTCCCATCTTGTGTGAGATTTTCAACAACATATTCTTAACCCTCTGCAACCTGGCTCCATCC-CAACATTTTTAACATTGCCACAGTTGTT----TCCAACATCAATG-----GTGTGAAA-----------------CTGCTTAGCCTTCGGTGTCAGTTGACTCCTTTGTG---AGA-GGCAGGAGGTCCCTCAGAGTTTTCCTGACCCTGCGCTCTAGATCTCAGTTCATGGCTTTTCCTTTGGCTTGAAGTTTGGCTTGGAAGTCTAAGTTTCCACTAACCCAGTATTTGGAATTCTTTA--CATTAACTGG-----ACCTGCTGC-----------AGTGCTGGATTCTCTCTCCTTGGCCTTGCTAACTTGCCCAAAGTGGTAAAGTCAGTTTGGCCTCTGTCATTTACTGTGTCAAGAGCTCATAACTTGTCAAGTTTTGACCTTCAGATCTATGTTAAGTGAAGGCTATTTACTGTGGCTCAGCCTCCTTCCATGATAGGTGCTTTCTGATCAGCAAGTATCAGAGGCCAGCCGCTGAGG-TGGCTCAGTGCTGTGAGCATTCTCTATAGCACTCAGGATTAGGGGAGAGATGGAC----TTTGATATGGGCTGGTGTATTGTTACCAAAGGCAATTTCAGGAACGGAACCAGGAAAGGAGGTGTTT---AGTGTTTTGGTATAACATGTGCTTA------AGGCCTGGCTGGTTCTGATGAGCTGACAAACAGTGGAGGATTCCAGGCATCTAAGTAGAAAATGACTGCATCCATAGAACAAATT

a score=26100
s chr3           146722699 1011 + 160039680 TTTTCTATTTAGCATCCTCCAATAGTTCCCAACAATCTGTAGGGTGACCCGCACAATCCTTG---TATCACTTGCTGGCTGCCTCTCATGATAGGACT--GAATAGCCTTTCTACCTTATCACTCCTTCAGTGCTTACTGCTAT---------------GGCCGAACCTTCATCATAGCTCCCTACACTCCTAAAGGCATTGA----------------CCTGGAATGCCCTCCCCCATTGAGAGACTGGGGCCCCCTGGAGTCTTAAAGTAAAGCAGAAGGTGCCTGTGTGTTGTAAGGTGTT-------------CCTTGTA-TTTTTTCTGCAGTAGCTCTGAGCTTTCCTGATATGATTTTCATCTTTTATGTCTCCTATGATTTTATTTGT---------TCTCAGTTTTGTTCTGTATCAGTTTTGTGTCACAACTTCTCAGCTCAGTGTacacacacacacacacacacacacacacacacacaGAGTAATATTTCTGAGGGAACAAATGAATGAAC-AAGGACTCAT-CTAGGCAGATGGCATCTGTCCTATTTACCATCAAAATTCCTCCCGAGGAGGTGTCATTCTTTGACGTATTTCTTGTCCCTCTTTCCAAATCAGTTGCTGCCTTCCGCCAGCTGCAGA-GCTCTCTGAATGATTTCAAATGTGGGATTCAAAATTGGCTGCCAAGAAATGCTACTTCATCTCTATTCTAGAGGAATGTGATGTTTCCTCTGACCCAGGGAAACCATCAGTCCTAGGT--------------CAGGAGATTTTTTTCCAGTGACAGAAAGGAGTTAACAGGGACAGACTTGAAATTTGCTCATTCCTTTGGTATTCCAAAGGTGTCCCGAGGC---------------------TGCTCTCTTGTTC---AGAGTGCATAGGCAAAGGCCA--CAAGGTCAGGGTTTTAATTATATAGTG--------CCAGGAAGTGTCAGCA-TGGGTCAAAGTTGCAGACTTTTGCAATACTATTCCAGGTCTAGACATGAAATGAAAATCACAATGCATTG--CTTTTAGTCCCAGAGCAAATTGGTCATCCTTCCAAAGCTAGGAGGCACAGACACAAAGGGATA
s HiC_scaffold_1 133309439 1083 + 233722169 TCTTCTAATTAAC-TCCTGTGATGGTTTTCAACAGCCAATAGGACAAAGTCCAAAGTCCTTGGCATGTTGTTTCATGGCT----CTCATGCTATGACTCTAAATTGCCTTCTAATCTCATTTCTTACTACTTTCTCACTGCTATCTGGTGTTTCAGTGTTGTAGAAGATTAATTTTAGTTCCCTCATCATCTAGGGGTGTTTAGTACTTGTTCCTTCTTTCTGGAAGGCTCTTCCCCATTGCTATAC-----ACCTGTGGATCCCTAAAACCAAGCCCAGGTCTCACTCATACTATAAAATGTTATCCAGCTGCTTCCCTCACAGTCCTTTCTGCCAGATCTCTCTGTATTTTTGTTATG-----CATTTGTTATTGCACCTGAATATTTGTTCACATGCATGTCTCCTATCTTtgtttcatcttatttttaaattgcaaatatttAGTACAGGGCCCTTGCA-------------------ACACACACATAGCAGTATTCCTGATCGAACAGATGAATGAATTAAGGAGTGATGCTAGACAGATGGCATTTGTCCTACTTATGATTAAAATTACTCT-AAAGAGGTGTAATTCTTTGATGAGTTTCTCATTCCTCTTCTCAAATAAGTTGCTATCTTCCGCCAGCTGCAGAAGCTCTTTCAATGGTTTAAAAGGCAGAATTCAAAATTGGTTGCTAAGAAATGCTACTTCATTTCCTTTCTAGAGTAACGTGATTTTCTCCGTGACCCAGACAAAACAACAACCCTTAGCAAATATTTCACAAAAAGGAGA-ATTTTTAGGGAGACAGATGGGGG-TAACAGGAATTGAGTTTAGCTTTGATTGTTTACTGGGTGTTCTATAGGTGT----AGGCAGGAATACTGTTCAGGTAGAATGCCCTCTCCTCCGTAAGAGTGCACAGGGAAAGGCCATTCCATGTTGGGCTTTTAGATTCAGAGTGATGTCATCTCAGGAAGTGCCAGCACTCTGTGAACCTTGTAAGTTCCTGCAATACAGTCATAGATCTGGGCAAGGACCACAATTTACAAACCATTACTCTCTCAGAGGGAGAGTGGATTAGTCATCTTTCTAAAAATGGGAGGAACAGGCACAGTGGGGCA

a score=11909
s chr3           146724293 453 + 160039680 GCACAAGAGCTCTCTCAGGTGACCAACTCAACAGTTCCTTATGCTGGCACGATTCACATGATGGTG-TGATCTGGTGTTCCATGCACACCCCTGAGTATCTGTTGAGTTCAGAAGCATcaccctttgtttgctcatttacaac-------gtgtgagaatgtaagtgattgaggggactgttattaaaggcaccattcaaatctgctgtaatgttaaatcaaaatatatccatcaggatcttgggtgtctgagttattTGCAACTAAATACCAGCTGCTACATTACAACAGATGATGGTACATCCATGTGTTCAGAGTTATTATGCCTGAGGATCACTGCATAGGACGGACAGA-----------AGCCAAAGCTGTTGTA-----AGGAGAGGGCTCATTGGAGGCTAGGCTAGGGAAGACCAGGATGTCGCATGCATAATAGTGATG-CCCAGATGAGTGTCTACCCTAACGTGAT
s HiC_scaffold_1 133311664 444 + 233722169 GTAGAGGAACTGCCTCAAATAAGCAGGTCAGCAACGCACGACG--GCCATGACATTCACGATGGTGATGAACTTGTGTGTGACACGTTCCCCTGGGCGTTTACAGGGT-------------CCTTCTTTTGCCCACTCAAGAAAGAAAGGGTGGTAGAAT-TGAGTTATTG-GAAAACTGTTGTTAAAGTCATTTCTCAAATTTGCTCTAATGttaacacaaaataaatcagtgagAATCTTTGgtgttttaattatttgtaaCTAAATACCAGCTGCTATCTTACAACAGATGGTGGTACATCCGTGTGT--------------CCTGGGAATTACTGCTTGGGGAAGCCAAATGTCTGGTGTGAACAAAAGCTGCTGTGAGCTCAGAGGAGGGAGAATTCAAGGT---GCTGGACTGCACTGGGGTGTCTTGTGGAAATTAATGCTGACCTAGGGCAATGCCTAGTGTATCGTGGT

a score=130341
s chr3           146728870 4664 + 160039680 [encoded data, 5268 characters]
s HiC_scaffold_1 133320845 5092 + 233722169 [encoded data, 5268 characters]

a score=6941
s chr3           146737359 472 + 160039680 GAAGGTAAAGTTTCTATTCTCATGA-AATATTTGAAAATGAGAGAGAGTATACAGAATAGCAAGGAAGGACTAGCTTCAGAGAAAATATCAGTGAATTAA----TAATTGAGTTCTTAAGCACTCAGTG-GACTATGGAGGGTCAGCAAAATGGGGAACGCCTCTGGGAGTGGAGAGGCAGACATGCA-GGATCTGTGAAAAGCTTGAATCTTTCTAGGGAAACCCCATAGAAAAGTTGCAGTTTTAGTAAATGTCCACAGCAAGGCTAAAATGAGAG----AAAACAGTCCCAGAACTTAAGTTGATTT----------------------------------CTGTGTGGCTATGTGCTGAATTTGGATTA-----TATTCATTTATATACTATCTTTTAAATGTGGCTTTTA-TCAGTTCTGAAAAGCAAGCCTGTAGAATACTGTCTAAAATCCTATTTCCACAGTATTGTCAAGATTTAGTATGAACAGT--AAAAATCTACAAGGGAAGCCACTGCAGA
s HiC_scaffold_1 133330382 506 + 233722169 GAAAGTAAGATCCCTGTTCTCAAGGCAGTATGTTAAAGTAACAGTGACTACAT-------CAAAGAACACCT---CTTAGAGAATATGTAACAGAAGTAACATTTAAGTGAACTCTTAAAAGATTAATAAGAATATGACAGATGCACAAATGAGAAAACCAtccagagaaaaggaagaaacttttTCATGGGGCTG------GCATGAATTTTTGGGGAGACATTACAGAATAAATTTGGAAGCCTGATAAATGCCAACTG--AGGTGAAagtaaagactgaaaaatatctccagaaattaaattaaattaaattaaatcaaatcAATGAAATGTGACATCTGGCTGCATGCCTGTGTGCCATTTCTGAATAGGAGACTATTTGTTTATATGTTGTCTTTTTA-TGTGGCTTCAAATCAGTTTTGAAATGCAAACCCTAAGGACATTGTCAAATACACAATTTCCGTAACATTGTGAAGAATGCAGGGTAGCGGTTGAAACACCTAACAAGGAAAGCATTTTAGA

a score=21123
s chr3           146737887 866 + 160039680 TAAATCACACCTTCTCAAAGGCATTAAA--------------CGAGGAACAGAACCACACCTTTCTCTGATAAATAGCAATCCAGTCAGTTGTGGCAAACCACTTGTGGGTCTTTATGTCACTCACGCCGTTCTTCAGGTTCCCGAATCGCTTTGTCAGATCCACCTGCAGCAGGTTCCGCAGAAGGTCCTTGAGATCGGAGCTGAAGTGTGATGGGAACCGGACCTGCAAGAA-CACGGCAGGAGGTGAAGCACA--ATCACGGCTGCCGGACATTTCTGTTCTGATTTCTTACAGGCTTTATTCAGTGACCGA----TCGTTATGAAAACAGACGGTAGTGGT---------------GACCACCAAACACTTTTCATGACATACCAGTGTCTGTAGTC---------ATCTTAAAGGAAGAGCATGATTTAGGT-AAGGAACACAAGGTGGCCTCCAGAAGCC---------------------------TAAAGCACACA--------TGCAGTCA-----------CCCAACACTATCAGAGG-CTCCCCCATTCTCAAAAGAGATGCCCTTGG--GCCTCAATGCAAACAC---TTTCTGAGATGTACAATGTAACT-TTGTAATCCACGTGGAACATGGA-------GCATATGTTGAGAAGAGGTCCTCC----AAGGAAGACTCTGAAAAGGGCTGTAAACACCCACACTGCCTTTCCCAGCATAGGGACATTACAGTTAGAC------------ATGAAACAAAAACTTTTAAGCAGAATTTTGCTATTGGGAAATAACATAGCAATGCTAGGAATACATACCCAGGAGACACAAT-ATTAAAAATGCAGGTTTTGCGGGGGGGGGGGGGGGAATAGGGGGCAGGTAGGCTATAGTGCCCACTTTACAGGAACAGGTAAAGCAAC-----TGATATGTATGATGACCAAAT----TGCTTAAGACTGCAGACCCAAGAGGTAGAGCTG
s HiC_scaffold_1 133333701 944 + 233722169 TAAATCctaacttttaaaaagctttaaaaaaaagtttaaaattgaaGTA-AGAGTCTCACCTTCCTCTGGTAAATGGCAATCCAATCTGTTGTGGCAAACCACTTGTGGGTTTTTATATCACTCACACCATTCTTCAGGTTTCCAAATCGCTTTGTCAAATCCACCTGCAGCAGGTTCCGCAGAAGGTCCTTGAGATCAGAACTGAAGTGAGATGGGAATCGAACCTGCAAAAATTAGAGCATATGCTGAAACTCATGTTCAAGACT-CATGGCattcttgttttgatttcatAAAGATTTTTTGTTAAGGCAAAAGGTTTATTATATAAACAGA----AATAGTCAGCAAGGCCCTTAGGACCTTCAAATACTTTTAACTGCATG-------CTGTAGTCCCCATCAAAaccttaaaaaatgtaaattatttggGTGAATGAAATAAAAGTGCTCTTTTAgggccttattttaaaaatgaactttctTCCCTTTAAGAACACAACTAGCTGTGCACACATTTGGAACATTTCCAACCAAATCATAAGCCTCATGCATCTTCAAGAGTGGTCCCCGTGGTTGTTCCTTAGTAAGCTTCTGTCTCAAAGCTGCACAGATTAAGGATTGTAATAGAAACAGAACAAGCACTAGTATGTACATTTCAAAAAGAgatctttccaaaaaaaaaaattctaaaagagaTCGTAAAAACCCACATTGCCTTTC------TAGTGAAAATAC---TAAACTATTTTTCACTTATTAGAAGACAACTTTTAAGCATAATTCTACTATTATGTAACATTATGAC------TGGAATAC--------TAGACAAGATGATGAAAAATTCAGATTCC------------TGAGCATTAGAGAT------GATTATTGTCCCTGCTTTATAGGTGGAGGTGAAGCAATACCAATTGCTTCTATAATGATTAAATAATCTTCCCAGGACTACAGAGCTAAGTGATAGCActg

a score=42082
s chr3           146740243 2542 + 160039680 CCAATTACA--GTCTCGTGCTTTTCAATTTTA-AAATAACCATTATTTTCTACAAACTTAGATGTGTAAATTTATTTCTCAAAGGTGAAGTAACATTTAA-AAAGCAAGTCATTGCATGTTGTCATGGTATCTATAACTTATATTCACTAATTAGTCTTACTGACCCTCCTCCCATCTAGCAATAAAATAATTCTGAATCAAATTTGTCTTCACAGAATAT-----CAGAAGTTATAAAATTGATTTCTGGCTAATGGTGGG--AGCATCTTGTTAGTATTCTACAGTTATTGTCACAGGGGAAAGATTATATAACTGGTAAA-------TTTCTGTGCTCCGAATAGACTTGCTGGGGTTAAAGCGCCTCATAG-------AAGAGCACCAAGTGGCACTCTATTAACTTCCGGTCACAGCACACTAGATTACGTTTTAAGAAACTATTTCTCTAAATCAGCTAT------------------TGCAATCTCAATAAAGGATTTATTTAGCAGGAAAAAAGTTATACATTAATTAAATTCTCAAAGAT----AAAGCATTTTCATACCC------TAGGCTTTCTATACATG-TGTCAATATTCACATTACCT-GTGGTCCTCATGGGAAAGGGAATCAGCCTGCATCCCATCAGTGGAACGA--GGGCTGGGGCAGGAAAGCACAGCTGTAAATAC-AGTACCATGGCTGTGGTGTCTCTAA-----------------GGGAGTACAGTAAGTCTGCAGA---------TGGGTGCACAGGGCTACTGGTCACTCCTCCTTCCTTCCCCTCCCCCAAAGCAGTCAGTGTTATAACTGTCTGCT-AGCAGACCAGTAAGAGACTATCTGGAAGCAAGTCCTGACGACCAGT--AAGTCAC-----CAGAACG------AAATGGCA-------------AAAAATGGCCTGGATTTCATGAAGACAGC-------------------------ACGATTGCT-----------------TTTTATTTCACAAACA-----------CAACATTTAggggccaggg---------------acgtggctcagctagtagagcgcttttctagaa-------tgcatgaagccctaggt--------ttaa----ccTTGCTTCCAAGTTCT-----GTGTTTGTCAGGACCTTGAGCGAGTGGTACCAGTG----GTACTGTAGGAAACTGCC---------CTGAAGTACAGTTGGCTTTTGGTGCACATATCtacagacacatggtttgt-ctgaatgtgagctgtcactctcagagtccaggacggcattgtgtgataaggagagggtacatgggtgacaagctgccagtaagaacactgagtct---cccatggctggcactgatatgtaacacttcacatgtgtgagcttcggtgaattgatgttgaggcagtaaaatgcacccctgcggtccacaggtggcctacc----tgtctgtgcctggtctcctATCTACCT--CATGActg---------------------------------------tcacaaatct-aaacccaactaccaatatgtgctgggccttctgagtcctcacagag--ttactgaacctggagagagattttaggatccAT--TAGCAGAGGGAATGACCTTTGGGCTACTAATCAGTTATCTATCATGTGAATGCTAATGTCCCTTCAGCAAATATTAATGAACTCCCTGATCA----GTATACATTGACGTATATACTTCTACATTTCCTGCG---------GTA---TCTTGCTGCTCATGAAGAACAGACAAATATTTACATTATATATAGTAAACCTAAGATATTTTTCCAG--TACGTAAGTCAAAGACTCTAGAATTAGGTTTTCTGTAACAGCTGCTACTTGATTATTCTGTTCTCACATACCATTTTTGAACACAATATTGATTTTTATATTCCCATTAGCAACACAGCCAGATAGGGTTGCCATGGAAACCATACTTGACTCTGATTATACACTACTGGCATACAGGCATCAAATATAAAGACTATATACAGAAACA-CAGTTCATGCATTGCTAGGATG-GGCACAGTC-ACTGCAGGATTGCAAATCCTTTCTCTTAACTGCATTTCCCT------GAATCTTAATAGT-CATGAATAATCTGACATTTAAATGCCACCTCCTCTGTTTTTCAAAGGCAAAATATGGGCAGGCGAGAGTATAA-AAGCTGACTGACCATCTATCATTCTGTGCACTTAAAAATACTAGTTTGGGTTAAAATACTGTAATAGAGAAATTGCTTAACAATTCAATATTCAAATGTATGTATATAAGTGAATTAATCACttaataatttttttttaattt-----taaCATT-----GCACCTATTTTACAACACGGTTTCAGGCTAGGATGTAATATTATCGTATTGAGTAACTTGCTGCTATTCCTTT--TGTTCCTTTCTGCTGTTACTGCACGGAGCCCAGTTTGCTCTTAGGCTCCTTAACATCTTCCCTGTTCTCCCAGTGTTAAGAGCACAGGCACACACCACCTTTCCTGGCATAACAACCAAATTGAAATTAAAACTACAAATATAGAATACCCAAATATAAGACTAAAATTGGATTTTAATGA---GATGAGCTATGAAAATT--AAAAGCTAGTTAACATCCAATTTGGATTTTGTGTACTAATAGAGGCAGTGACAGTCTTGCAGTATGGACAGACAGCCTTCT--GCTTGGATCTGAA-GTTGAAACA-------GCATTATGGGAGAACTGGGGACTATGACTTGTATGTTACATCGTTACAGATTCTAAA
s HiC_scaffold_1 133339033 2697 + 233722169 ccAATTATAAAGTTTTATACAGTTCAGTTTCATGAATGACTATTGTTTTCTACACATTCG----------------------ATAGGAAGTTGCATACAGCAAAGCAAATTAGTTCATGTTGTTATG-----CATAATTTAAATTCACTAACTGacattact---ctttttttcttttagaaataaaataagtcCAAATCAAGTTTGTCTACACTGAACTTAGttacaaaatttataaagttTGTTTTTGGCTTATAGCAGGGAAAAATTTTACTGCTCTTCTGC--TTATTG--GCAGGAGACACAGT---TAAGTAGTAACGTTATCTTTTATGCATTAGGATAAAATTTACTGGGCTTAAA-TGACTCAGAATTTGCACACAGCCACCAAGCAATAATCTACTAATTCCTGGTCAtagcatattaaaataaattt----aaattatctcCCTAAGTTAGGTACAAGAGGTTCTAAAACACCTGCAGTATCAGTGAAGAATTTATCTAGcaaaaattatcatatatattagTCAACTTTTCAAAGGCCctgatagctttttaaaaactagcaTTCAGCTGTTATAGACATGGTTCCAAGCTCCACACTACCTCAAAGAACCCAGGG----------CAACTTGGatatgataaataaaaagaaagagctaGGACATTTGAGAATATTTATGAATTCTGGTGCCATGTCTATGGGTTTTCTAATCTGCTCTCAGTGCTATGCAAAAACAGTG-GTAGACAAACATATTCTGTGGCTGCAGAGAA-TACTACCCACACCACCCTCATTCCTCTCACAAAATAGAGCCATT-TTGTAATCATCTGCTCATCAGAGCCTTGAAGAGCTGTCTCAAATCAGGTgttaatgaacattttaaatgacTGCAGCAAAGCGTTTAAAAAATGACCCTATATGAATGGTAAAAATGcctttgattttattaaaataacttcTGAGTACATCTAAGCCTCTTTAACTATAGCTATGGccaaaaatagtatttaaatttcCCAAAAAAGTATTAACAGCAGCATCTGAGAAAAAATGTGGAGGCATATGTGCATGTTACTAAGGAAACAGAGTAGGTTCACAGAAGAGTTAATGTAGCAGGCCTGAGATCACCACCCTTAGGACTCCTTGAGACCAGACCCCCGCAGGTATCTGCAAA---CTTGAA----TGGTATCACTTCCTTACACTGTGTGAAACTTCCTCTTCATGACGAGAGTGGCTTAGACTCTTTGTACAAACA---------ATATGGTTTATGCTGAACATCAACTTTCGTTCTGGAGATCTTGGGTTTGGATATGTGCTCTGTAGCGAGTGCATGCGTGCACAGTTTCCAACATGAACAGTGATTATAGTCTCGTGAGCTGCACTAATACAGGGCGTTTCCCATGTGT-----TTCACAATTCATTGCTGGAGGAGTTCAGTACATTGCTGTGGTC-ACCGGGGAAGAACTAGAACGAGTGTTCCTGGTTTCCTCTGGACTTAGCCTGACTGCTTTTCCCTTCGCTGATTTTGCTTTGATTTCCTCTTTTGTAGTAAGTCTTAGATGTGAGTATCAGTGTAGGCTGAGTCCTGTGAGTTCTCACAGGGAATTAC-AAACCCAGAGAAGGGTTTTGGGACCCATGACATAGAAAGGAATGGCCTTTGAGCTGCCAATCAATTATCT-TCATGTGAATGTTGATCTGTCTTTGGGAAAACTTAATCAAGTCTTTGATCACTCAGTATATACTTGCGTTTCTATTTTTAGACTCTGTGCATATTTCCTTGTACATTCCTGGTGCTTGttaaaaatggaataatattTATGCTACATATAATGAAgctcaggattttttaaaaattatgtaagcCA--GACTCTAAAGGCTGGTTTCC-ATAATAGCTGTTCTTTGATTATCCTATTTGCAAGTATCTGTTTTGAACACAGTATTAACTTTTATACTTCTGTGGATAATACAGCCAGATAGAATTGCTATCAGATAAATGATT-ATTGTGATAGTATAT--ATGGCACCAAGGCATT-AATCTAAAGACTGTACACAAAAACAGCAGCATATATATTGTTAGGACGAAGAATAGTTAAATTgagaattatattttttttctgtcagcTATACATTTCTAAATCAGAACCTTAATACTGCATGAATAATTTGACATTTAAATACcacctcttctattttttaaaggcaaaatatgTGTAGGAGACAATCTAACAAGCTGATAGATCATCT----TTCTGTACATTTAAAAGTAGCAGCTTTAGTTGAAATActatgagagaaaaat---------atttaatgttcagATATACATATTTCAGAgaattaatcatt---tatttttattttaacttttgacTATCATTGATAAGTATAATTTTTATGGTATGGATTCAGAATGGAAAACACAATCAACATAAAATGTTGCATAAAAATAGTcgtttaaaaatcagaaaaggcaATTCTGAATGGAG---AGTGTATTCTTAAATGC-----TATTTT-------------ATATTAAgacc------------------------------------attaaaattttaaatgcaaataggAGATCTATAAGTATAAGGCTAGAATAGATTTTTAATGACTtgaaaaattagaagaatttaaaaaaatagttaatttCCAATCTGCCTTTTAACTCTAAACACAGA-------GCTTTTACAATGTGGGTAGAGATACATCTTAGTTTGGATTTGGATGCAGAAACACCTACTTGCACT----GGGAAGTAGTGATTATGATTTGCATTTCATATAA-TACAGAAACTAGA

a score=33068
s chr3           146743898 2025 + 160039680 TGCAAGAGGTATTTGCTTTTTACCTGTGACAAAGTTAAGGT-TAATGTCGATGGTAAGCCCACTAATTTGTAAATTCTATTCTGGCATGAAGGCATCTCAAGAAAATGTAATAAAATACCAGGAAAAAATTCTCCTAACTCTCATAGAGAGCATACACACTGTGAGATTTGGAAATGACAATGCTATGTAGAGCAGTAACCCCCAATTGCTGGATAGACAGTCTACTGAGTCTTTCCTAGcagtctcattgtggctgcaattaatttaaatttggatcctagcataaaggataaattactacgttattggatattcatggtaccttgtgaatatttaacattgtaaaatttaaactcattgatgctaggCTCAGCT-TTCCAAAATGCCGAGTGTGGATCCGGTTG-GTTAGAAAGAAATGGA--GACTTTACTTCC-------------ATGCTGATCAGCTTTATCTCTGCCTACGAGGGTCATAAAATACAACAATAACCAAAAA-----------------------ACGGTAAATGTATGCACC---CCAGGGCGATATTAGT--TAGAGCCACAGGTCCATTCTTCAATAAAAACAAAAGGGTGAGTGAGGG------GTGTGGGGTAAGTGCTAAGCAGGG---TGCCTCCTC-----CTGTGAATCCAGAAGTTAATTACATGGCCT---TCTTTCTGTGGGGGGAGGGCACATGAGTGCCTTCTTCTGTCTGTGAACTCAGGGCCCTTTCCTGCAGAGCTATCTCTCAACTCCCAAAGCTTCCAATGCTTGCGTTCCTTCTCTACTGAAAACGGAAGGAGTAATTCCAGAAAAGTCTCAAGCATGAGCTAAGGTGAGAAGTAATGACTTTAAGCAAA-TACTTTTGGAAGAAAAATTAGAGACTAAAAGTGCAAAAGAAAAGTTTATGGAGTAA---------TTTTGGAGAGTGTTACATGCTCAGTCCACAAATGATCAAGGGTCATTATTTCCTACTTGCTAAAAATCAGCACCAATTATAATCCCATTAAACATACTCAATTCTGTTGAAC-TCAATTCTGTGAATTCTTCTTTGAAAAGGCCCATCCAAGTTATTTTGACTTTTAATT------TTGATGTAATTCAAATAAGACATCTATTTTTAGAGC---AGTTATATAAAGACAGCTCCTAAAA-----CTCTAAGTATAACTTCACGTGAGG------------TTAGGTCTGGTTTACAGGAATACTGAGAGCGACTGCACTCAC----------------------AGGTAG-------CTGGCTCCTTCTTCTGACCCTGCTGACCTGGTTGCACAGGAGC--TCTTTAGTCTAGAGGAGCATCGATACAGAGTCTCTACCTCCCGGCT-GCTTGGGGCAGTGACCTGACATCACGATATGGCTCGAATCTGCA--GCTTTAACTTCACG--CAGAGCTCCGGGGGAAGAAGT-AATGA---------GACTTACCTTTCCAGAGACAATCTTCTCATAGATCTGAATTGGCTGGTCAGCAAAGAATGGAGGGTAGCCAGCAGCCATCTCATAGATCAGCACGCCCAGTGCCCACCAGTCCACCGCCTTATTGTAACCCTGGGATAGAGCAACATCAGCGAACACTAAGACACCAGTGAT--------------------------TTCAAAATGATCTGGAAATGTATGAACATGACTGTAGCAGTTTTT-AGCAACTGTGTAGAACAGAATATGATAAATGAATAAAACCTATCAGGGCAAGTTT-AATTAAATGAAGCAAAGAATTTCCAGATATTGGAATGTGTTATTGGGAAGAACTGTTAAAT-------CTGAGTCC----TAAAAATCACTGAGAATAA--------------CACTGA---------------CAGC---AGAAAGGGAATTAGAGCAAAGTGCCGCTCGAGGCCCAACCTAGGCCACAGCCCTATGCATTAGGTGTGCAACAGTCTAGCTAGGGAAGTCAGAAATTCTAAAACAAAATAGGATTATTGGAATAGCAAAAGATGGAACCAACTTCCGAACAGCCTACATTCTGGG-GTCTGGAAGGCAGAAACACTTGACATAGTCACATCTATTTC--CATATTTTCTGAAAACTTAAAATTTACTGTGGCCTCTAATCAGCAGTAGTGTCCAAGTACATGTGAAGTTTGCTACTTGCTTGTCTCCATGTTTC
s HiC_scaffold_1 133341765 2079 + 233722169 TGTAAGAGGTATTTACATTTTACCAGGGACACAGTTGAGGTGTAAGTTTCTTCGTCAGTCTGCTAATTTATGAATGCTGACATAACA---AGCTTTCTCCCAAAagtgtgataaaatac----aaaaaaatcttatAACCCTTGTGGCCTGCGTATACACATTGACACATGGAA-TGACAATCCAATGTTGAAATGTGAATGCCTGTTCCT------AAAGCCTACC-------TGCGAGCAT----------GCTGCA-----TTTAAATTTGGGTCCTGGCAGAAAAGATAAATTACTGCATTGT-GGCCATTTG-GGTACCTCATGAATATTTAACATTGTAAGTTTTAAATTCATGGATCCTGAGGTCAATTGTTACACTTTTCAGAGCTTGAATCTGGCTgagacacaaagaaatagattGCCTCTATCTTCTTTCAGAATCTTTATATTGATTAGGTTTATCTCTGCCTAAGAAAACCTTAACATAAAAAAA-AGTCAAGTATctcagatcttggaaataatgtGATGGGAAATTTATGTTCTGTTTCCTGTTCATATTCTTAATGGAGCTA----TGTAGTCTT-AACAAAAAGGACAAGGTAAAAGAAAGTATCATACGTGGGAACagcaagaaggaaaaatattcctTCTCATTTACTTTATGACTAATTGCTTAATACACAGACTGTTTCTTCCTG-----GAAAGGTTTAAAAGGCTCCTCTTC-------------------CTTT--------GCTATCTGGTAG-----GAAGAATCAGAC---------TCATCTCTATTGAGACTGACTACGGTACTTTCAAAAAAGACCTTGGGATGAACTGTAATG----TCAGTGATCCTAATCAAAATGCATTTGGGAGCAAAACTAGAGATTATAAATGTAAGAGAAAGGTTTATGTGGCTAGATACACTATATAAAAAACTATGGCATAGTAAATT-ACTCATGTTCAAGAATAAC--------ATTTGT-----ATCAGTAGCAATTAAAATC------AACATGAACacttctgttaaaaataaattctataaa----------------ctcatccattttaaatttctttctaatTCGAGGGTTTCTAACAGTCAAACAAGAATTCTctcctgaaaaagaaaagcataggaAAACAGATCTTCAAATTTCTCTCCGAGGAGATATTCATTAAAATACCTaacaatttttatgt---atttgaaggAATG-TCAGAATTATGGCAATCACCCTGTTCTTTGTAGGcaataaaaagtagtaaaaatcaaatttgCTTTACTG-TATTGCTAATTTGCTTGTACCActgccatttttttcttataagatGAACAGTatgatatttctatatttttttaagcTTAGGATAATATTGTGATGGCATAATATGACTTGaatctttaaagcttaagattcaTGTACAGAAATAACGAATAAGAAATGAATGATAAATACACGACTTACCTTCCCAGAAACGATCTTTTCATAAATCTGAATTGGTTGGTCTGCAAAGAATGGGGGGTACCCAGCTGCCATTTCATAGATTAGCACTCCCAGTGCCCACCAATCCACTGCCTTATTGTAGCCCTGAGATAAACCAACACCAATGTCAATTATTACTTAAGTTACTCAGAGGAAAACAAACTCGTACGTAATTCAAAATTATCtgcaagcaaagaaaaatt-ttaaaacacctgCTAAGCAggtg---aggatagaattttaaaaaggaacaaaatgtatcAGGTTAGATTTAAATCAAACAAAAGGGAGAATTTCCAGATATTGGAAGTGAATATTAGAAAAGATTATTAAATGTTCTTCCTAAATCCATGATGAATATTACCGATAATGAAATTGGTTCTGTTTCACTGAACTAACTTTGTTTCTCAGCCATAGAAAGGGAGCTAGA-CAAAG----ACTT----CCCAA--TGGGCCAGAATCTTATGAATCAGGTTT-------TCTA--TAGAAAGGTCA-AAGTTTTGAAGCAAAATAGTACTATTAGAATAATA----CTGGAGCTGAGTTCAAAATATTGTACATTCTGGGAGTTTGGAGAGTGAACATATTAGAGATAATCATGCCCATCTCATAGGATCATGTGAAAG-TACAAGTTTAATGTGGATCCAAATTAATATAACTCTTtaagtgtaacttacttttgcaaTCTAC-TGTTTTTATATCTC

a score=3685
s chr3           146745308 104 + 160039680 AATGGAGGGTAGCCAGCAGCCATCTCATAGATCAGCACGCCCAGTGCCCACCAGTCCACC-----GCCTTATTGTAACCCTGGGATA---------------GAGCAACATCAGCGAACACTAA
s HiC_scaffold_1 203627359 124 + 233722169 AAGGGGGGCTGCCCAGCCATCATCTCGTACATCAGCACCCCCAGGGCCCACCAGTCCACAGAGGGGCCATACTCCAGCTCCTGGAGGATCTGTTCAGGAAACAGGCAACATCAGGGGCCACCAA

a score=15366
s chr3           146746596 2182 + 160039680 TACCTTGCTGAGGATGATCTCCGGGGCCAGGTACTCTGGGGTGCCACACAATGTCCATGTCCTGCCCTTGACTCTTTTGGCGAACCCGAAATCTGTGACCTATGAAGG------GAAACAGGAATGTGAAA-----ACTCACTCACAGAGTACAGAGGTCCTGTAC--TCAAATCCAAAGTTAAGAATTCAGGATTAAAATAATATACATGAAAAA-----------AAAGTCCACACGATTAACAGTAATTCATG---------------------------------------------AAACCCCATCTCTTCTCAAAACAAA--AACAACTCTCGTGTGGCAGGACAC-----AGACCTATGCAC-----CTCACAAGTGAACAGGA-----GGAGCAAAGGTAGAGGCCCAGTAC-ACAGTAAGTGCTGGTGA----GACACCCCAAAGTCCTGCCTGGCTCTGCCCGTGACATGGGTCATCCTCTGCGGACACACTTCTGACAGGTAAGCCCTAGAAAGCCGTGGCCTCAAGCTATTAAAGGAACTA-----------GAGAAAAGATACCCAT-TAACTGCTGTGTCTGCAGTTAGGTCCCAGCCAGTCACGAATT--TGAGTGGTAAACATTgctagactttctgggttaaaattctaattcttccattcctgactatgtacctGGCCATGACTGAGACACATTAACTTTGAGATTAGGAGTATTTATAATTCACATGGTTAATATTAGTATTAAAAGAGGCAACACAGATTGACTATTGCTTATCCAAAGTATTAGGTACCAAGAGTGCTTCAAAGTTTGGATTTTTCCAG-TTTTTTTTTTTTTAATAATTCCAAATGAGCATCGAGATCCTGGTGAGGAGGC--------AGCCACAG----AATTCATGTTCTGTAGACGATGCACGGTCACAGCCTGGAGG-AACTGCAAACACTCTCATCAGGGCGCCTG-ACTCTGATCACACT-GTCCCATGAAGTCACCTGAGCAATTCTCCACTTAGGGT---------------GAGACGT-----------------------CAATATACAAACGG------ATTTCCGACTGGAC-CAGTTTTGATT---------GGGGTTTTCAGACTGAGAGACTAGAGCTACACAGACAGGATTTCCGGCACCCACGACTACTCACACAGTTAGC----------------CACACTGT--------TTCTTTTGGCAGGAGCCTAAGCTTAGCTCACAGCCACTGATTCTAGGGGATA-CAAACAGGCCCCTCCCCTCCTTCATGAGT--GATGTACACACCTGTAAAGGCAGAGCTGTCAGCTCACTTC----AAGCCTTTTAGATAGAACCAACTTTCT--CCTTCAAACCAaaccaaacgaccaaccagccaaccaaccaacccaccCATCAAACACTGACAGTTGAGGC----AAGATGTGTGAAGCTATTTCAGTGTCTGCCAAATGCATCCATGCCATGGGATCCAATCCTACCTGG-------ATGTAACCCTGGTGGTCAATTAAGAGGTTTTCCGGCTTGAGATCTCTGTAGATGAGGTCGAGGGAATGAAGGTACTCAAATGTTAGCACAATCTGGGCTGCATAGAAAC----------------------------GGGCGTGGGGCT-CACTGGAAAAGAGAAAGC--AGTTTCCTGTAGAAACGGGTGAAGAATGCTCGCTCGTGGATTATACACTAAATGCAAACGGAGTGGATGCATTTGGGGAGAGGGTTTC-CTTATTCAAATATTGGTGAAAAATTTGTCATTTTCCAAACATCTATTGCCTTCAAATAACACATCTTATTGCAAGTTATCATTGCCCAAACTGGGAGCTGGTGATGCCATTGTAAATACAGCTGCCCTTGAGAGGATG-------------GTCTAG----AAGAGCCCCCACCGCAGTTCCCAGGTCCCAGGCTCCACTCACTTTCCTACCACAGCTCAGGGGTTTAAGGAGTTTCATTATACAGAA-CTGCTTAGCTGCATTCATCTGAAGATCAACACTGTC--------------------------------------------------CCCTATTCACTGACTGGCACACACTCGGC----ATCATATAAAATCCTGGT--------AAGAACACACACAATCCCATCTAG-AACTATACAGGCAATCTTGTCACTCAAGTTTCCTAATCTCCAACCGGGCACGTTTAT--AGTCACATAGAC-------ACAATCTGTA--CCTAAGT-----------------------------------CATATATC-TAGAAACTCTGACATTAGTGCAATTTTCATGCTATAACCTTAGAATTATTTGAAAATGGTATACCAAATTTCTAATTGGAATTTGTAGTTAATTTTCAAAAACA-TTCATTGAGTGTTTGCTAATCTGTCTGATAATTTTTTATGATTTTCAGACTTGTGTCTTTAATAAACAACCTCAATTACTGATAGAATTTC
s HiC_scaffold_1 133346438 2355 + 233722169 TACCTTGCTGAGGATTATTTCTGGAGCCAAATACTCTGGAGTGCCACATAATGTCCAAGTTctgcctttaactcttttggcaAATCCAAAGTCGGTGACCTACGGGGGATAAAAAAAGCAGACCTATGAAACTTGTATCCCTCCACCATG---AATGGTCTAATACCATCAAACTAAAAGTGAAAAACTCAAGATAAAACTTGAAATCATGAAAAATAGGGAAACATTAAGTCAATATAATTGAGACTAATTTATGAAGACAACTACTTagtgaatgaaaattaaaacaatctaTGTGGAAAAGCCCTATTCCctctcaaaacaaatgaaca--------gcAGCAAAATCCTTTTGAGTCTTTTTCACAAAATCCCAAGGAATAAAAGGACTCATGGAATAAAAGtgaaagtaaaatataacaataaatggTTTTAATAATAATGCAACAATGTAAT-----------------ACATATGCCATTATGTGC---------------------ACCATCAAA-------GCATGAAACCACTAATGGATCTACTGCTAACTGTGTGCAAAGGGACTGGCATATCTACTGCA-CTACAGCTA-----CTGACTGTAATACAGTAAAGAGCAGGAATTCCTATCAGACTGTCCCAGTTTAAAGACTGGCCATTGT-TTAGTGGCTGTGT---------------AAACTTcttattccttattttatttgt-cttagaAT----GAGGCTAACACAGCTATTTATCAGGATAATATAGGCTGATCATCTCTTATCCACAATGTTTGGGACT-GGAGTATTTCACGTTTTGGATTTCTCTGGACATTGAATTTTGGGACATGTGTATATGCATAATGAGATCTTAGTGATGGAACCCAAGGCTAAACACAATATTCATTCATATTTCACACACACCTCGTAGTCATGgcttgaaggtaattttatatgatatttttagTGCACCTGCATTTTGACTGCACTCATCAGATGTAGTTACGTGTGGAATTTTAAATTTGGGGTTGTGTTGAGGTTAAAGAAACTTCTTGCTTAGTATTTTCTTGGATACATCATAGAAAATGTGTTCAAGTCCTACCTGGATGTAACCTTGATGGTCAATTAAGAGATTTTCAGGCT------TCAGATCTCTGTAGATGAGG--TCTAGTGAGTGGAGGTACTCAAAC-GTTAGCACTATCTGAGCTGCATAAAACCGTGCGTGGGGTTCGCTGAAAAGAAACGAAAGATTGATTTTCAGTCAC-------AGTGGATAGCAAACA--------------TTAATGAGTAGGTTATACACAAAAACTAACACATGTTGGGAAAGGCGCTTCTCAAAAGCATGT------GAAGAAATTtgctgattttcaaa--------------tatttagtaAATTA----------CCTTCAAATAATGTT--TTGATACCTTTAGGGTATAT-----TTTCTCTATG-CAGCTGGATACGCTCAGCATCTGATATTTAAG-TTacattgaagaaaaatataatccagCCAGGCATTTGGCAAAC------AGTTGTAATCCAAGTACTTCGGGAGGCTGGTAGGAGGAT-TGCGAGtttaagcccagcttgggcagtttagcaactcaTCAATATCCtatttcaaaatgatttaaaagggGGGCTGTATTGGCGGATATGCAGCTTAGCGTCCT--------GGGTGTAAA-------CACATGTATAATACAAAAACTAACAACCAAACAGACAA----GGAGAGAAGGTAGCAAGCAACCAAGca--ggcaaaa--------------caaaaaaccctaaccTTAAAAG---TCATTTTATTGTAAATTATTGTTGCCCATATTAGAAGATAGTGATTCT-TTAGAATTATGTCTCACCCTGAGAATGGGAGAAAACCAAAATGTCAAGTGGAAAGTGCTACTGCTATAGT-------TAATAGGCTCTATCTACATTTTCCACACATTTCAAGTCTCTAAGGATTTTCACTACTTAGAATCTTTTTAACTGCATTAATCTGAAGGTTAATGTTAGCACAGGACATGGGAAACCTAGTGACAAGTAAAAAACCCAGTAAACATATATTCTTATTACAAAAATGACATATGCTTttctaaaaaaatctaaaacatttgTGAAAAGTGAAGAACATCCATAATCCCTTCCAGAAACCATATACGCAATCTTGgcatgaaaattttcaaatcctTTACTGTATATGTTTATGCAGACACATTGGCCATATGTAGAATCTGTAGGCCTGTATAAACATGTACAGTTCTTGCATACATAGATTACTTCTATATATCATTGCAATTTTGACAGCAGCATAATTTTCATGCCACAATTTGAGTATGATTCCAAAAGGATATAtcgatttttttatttaaatttgtaattaatTTTCTAGTATAGTTCACTGAAT-TCTCCTAATCTGCTTGATAAATTGAAATAGTTTTTGGACTTGTATCTTTAATTAACAATCTTAACTATTAATAGTATTTC

a score=12851
s chr3           146747903 307 + 160039680 ATGGGATCCAATCCTACCTGGATGTAACCCTGGTGGTCAATTAAGAGGTTTTCCGGCTTGAGATCTCTGTAGATGAGGTCGAGGGAATGAAGGTACTCAAATGTTAGCACAATCTGGGCTGCATAGAAACGGGCGTGGGGCTCACTG----GAAAAGAGAAAGCAGTTTCCTGTAGAAACGGGTGAAGAATGCTCGCTCGTGGATTATACACTAAATGCAAACGGAGTGGATGCATTTGGGGAGAGGGTTTCCTTATTCAAATATTGGTGAAAAATTTGTCATTTTCCAAACATCT-----ATTGCCTTCAAATAA
s HiC_scaffold_1 133347448 303 + 233722169 ATGTGTTCAAGTCCTACCTGGATGTAACCTTGATGGTCAATTAAGAGATTTTCAGGCTTCAGATCTCTGTAGATGAGGTCTAGTGAGTGGAGGTACTCAAACGTTAGCACTATCTGAGCTGCATAAAACCGTGCGTGGGGTTCGCTGAAAAGAAACGAAAGATTGATTTTCAGTCACAGTGGATAGCAAACATTAATGAGTAGGTTATACACAAAAACTA----------ACACATGTTGGGAAAGGCGCTTCTCA---AAAGCATGTGAAGAAATTtgctgattttcaaatatttagtaAATTACCTTCAAATAA

a score=31152
s chr3           146749812 1927 + 160039680 TTTAACTGAATTCTGAATACTGAGTGAAACTTATTCTGGTCTTAATCTTAAGATACATTTTATAAATGATTACTAATTAACAGTTGTCG-CTATGAACC-TTGTACATAGATAAAAAT---------TGAAGCATGTTAGTAAAAACTTGGCACATTACTAATTATATATGTAAA--TATAATTGTGTATGCAATTTGTATATACATTTAAGGAACTCCACATGAGAAAAGCTT------TAATATAAGTCTAAAAAGAC---TTTATAACACAACCTCATCCATCACCATGAT-----CACTATTACTTTTATGT---CTTCTTCCTCATATTC-GCTCAATCAAATTTGTTATAAATGCC--CACTAAGTATTATTAGGAGTCACATAGCATGTGTTGTTATATATCTCAAATACTATTATTTTTTTTCAAAACATGTTGGttttttaaatttaaattttttatttttaGAAATTCTTCAAATCAGG-TCACACTACTTACCAGTGGAAGAATATTTAAATTAGTTTCATGGTGCTCTCATTTGAAATGTAAAGCTCATATCTGTCATAGCTTCCTATTGCTGTGCTCACCTAGTACTTCCTAT----GGATAAAATGAGTTAA--------TTGACTCAGATGTGTTTTGGCTTAAAGT------------AAATGCAAGCATGGGAAGACTCAGGAG---GAGGACGTGCGCGCGCGCGTGCGTTACCTGAACCTTCCAATTCTTCTCAGATGTGAGAACATCTCTCCCCCAGGGACGTATTCCATAACCATGTATAAATTAGAATTATCCTATGAACAAATAACAAGTACC----AATTATAA------------AACATTTTAAGATGACAGCATGTTCAATTAGAA-AGGGCAAAGTCAAAATCCATTTAACAGATCAATAGAAATGAGTGGGAGAGACACGAAATAAAAAGTGCTCTAGTT------TTCCACACTCATCTCGACCCCCTTAGTATTCC-------------------------AGCCACAAAGAAACCTGAGACTTTTGCTGTTCCTCTTCTTGAAGGGGACATTTAATTC-AGAATAATGAAATATTACAACAATGACATACTAGCACAGCATATGCAAAGAAATAATAACATTGAAAA--CAATTTGGAAAA-GCTAATAAGACTATTGACATTTTCTGTTTGAAAGCTGGATGGCT--------------------GTCTATGTTAAGGACTAGGCAGGAGCAAGGTGCCGCCTGTG-CTCAGC-----AGTCCTGAGAAGCGTCACTCCACAGAACCAGGGCAGCGCGGATTTGAAGGATCCACCTC----CACTTTAGCTGACTTAGCAACAGTGGCACAGAGGTCGTTCT--CCTGGTTA-GCAAAGCAACAGCAACAATAAAGCCACAAAAGCCCAGAGTACAAATCAGTACACGAAGGAAAATCTCCAGGCCGTCACAGGAAGGGTTTACGCTCTGCAG------------------AACATGCGTAGCATCTTCATTTGAATGAGCATAAGA---------------------------CTGACTAGGAAGATGTCCA--------------CCCGTGCA----------------TCACTGATCCAGAAAGAAGCAGGACTCCCTC-AACGTTGCCCCAGCTCACAAGCACAACGGG--CTGATCACACACA-ATCCAGGGCT-TAGAGTGTTTGCTCACGTCCACTCTCTAGTTTTATCATTT-CACCAGGCTTCTCCTACTGTTTCACGTGCCAA-AAGCATATCTGGGTGGAAATACCTTCATTAGGTATTTCCTAATGGGGCAACTGACCTTAAAAGAGTACTCCAGCCGCACAAGGAACGGGAACTCCACGGCCTGCAGGATTCTCTTCTCATTCAGAGTGTGCTCTATTTGCTTCAGCTTAACAACCTGCAAGGGGAAGACACAGACGTCAGTGTATTTCAAC-AAATTTAAATGTTGTTATCA-TTTCAAAGAAAAATATCTTGCATGTAATAATCACAACGGATGAACAGGATTACTAGACCTCAATAAAGAAAATAGTAACAACCAGGGTGGTAAGAGTC--AAGTTTGCA---GCCTAGCAGAG--TCCCAGCCTCTATCTTCTG
s HiC_scaffold_1 133349023 2046 + 233722169 TTTAACTGAATT---------------AGCTTACTATGGCTTTAGCTT-------CGTTCTCCTACAGATTA----TTAACAGTAGTAATCTATGATCTATCATACACagagaaatgtatcagaatctGTAGTCTATT-TTAATAACAGATCCTATTAGTAATAACATAAAACAAGGTACAAATGCTTCTTAAACTagc-tacatattttaaaactctaatGTAGGAAAAGCTTGGAGAGCAAAATTTGTGAAAAAGCACATTTTTATAA-------TCAT--ATCGGCATAATGCCACTATTATTATTTCTACATATATTCCTTCCTCATCTTTAGCCTCCTGTAATCT----TAAATACtgttaataaatgtaattattag---aATGCTAAGCACTATATTATAGTTCAAATA--------ttttgctgaataatattagtactttaaaatttaatgtcttcatttttaagaaacttcAAATAAGTCTGACCATATCTACTaatggtaaaatatttaaattagttttatA-TGCTct-gcttgaattttaaaatgcatgtatgACATGatcttttattaatgttttaacCCAATGCATCATATTATTGGGTTAGttaaattaaaggaaattttgGCACAG----GCATTAACTTAAAGATCTGggttttaaaaagccaaacataTAAAGACTTGAGGAAGCGAGAAAGTTTGAGGAAGGTTCAGTTACCTGAACCTCCCAATTCTTCTCAGATGTGAAAACATTTCACCTCCAGGAACATACTCCATAACCATGTATAAATTAGAATTATCCTAT-AACAAA-AGGAGATAACACAAAATTATAAATCTGGTTTGTGAATATTCTAAGACTATTCCATAGTcaatcagaacaagacaaaaccaaaatcTATTTGACAGATtagtaaaactgagaaaaaaaga----gaacagaaaatgctTGAGCTTATTTATGCTGGGCTCCTCTCCACCCTCCCA-TATTCCTGCCATGTATCAGTCACATTATCAGCGCCATATATCAGGCTGACAC-TTTGTTGTTCTGTTTC--AAAGGGAACATTTAACTCTTGAACAATTAGACACTAAGGCAATGATACAGTGCTATACTACATGCAAAGGaataactaaattaaaaaacTAGTTCAAAAAATGCTCCTAAGAATA-----ATTTGTGTCTTAAGAGATTAATGGTTTTAGTATCTTAGATACATAGGTCTTCATTTGGGGTTTAAAAAAGTTAAAGTGTTTCATATGATTCAACTACAGAGAGATGCTAAGTATTATTCTAAAGAGTTGAAAAGGTGTCAATTTAAAGAATAAACCTTTTTGCACTTTATCAGACACC-TGACAGTACAGCAAAGAATATTCTGCCTTGCTTATACAAAG---------------------AGAAGAGTTGAATATAAACCAATAAGTAAAACAGAGTGATGAGGTCATGGTTAAAAA-------GTCCTGCAGGTAAATAAGAGAAGTACAGTTATATCTATCACATGCATTTGCATGCGTACAAGAATTATGTAATATTATATTGTGATGTTTCTGGTCACTAAAACATCTGATTTTTAGTACCTTCCTGTGAAAAATTACACAGCATGTTGAATGCTCCATGGAGAACTAAAACCTTTTCTAATGCTGTATAAGTTTATAAGCACAACAGAATTTGATTACATAAATATCTAAAGatgtctctttttcatttattcataatCTCCAG-CTTATCATCTGCTTTAGAATTCTAttatagaattatattttaagaagtaTACCCGCTTGGAAAGAATTTATTTAGACATTACCAA-------AATTTACCTTAAAAGAATATTCCAGTcgaacaagaaaaggaaaatttactGCCTGTAATATCCTTTTCTCATTCAAAGTATGCTCTATTTGCTTCAATTTAACAACCTGTAATAAGATAA-ATGAATTTTAGTGAATTTAAGCAAAATTTCAAAGTTACtatcactttaaaagaaaaatgttctccATATAata---aagatgaagaagcaaaattgTGAGATTTagataaggaaaataataattatca----GGTAGGCTTCCAAGACTTGAAAACACCTAGCAGAGAATTTTAACCTTAGTCTTATG

a score=73693
s chr3           146752721 8422 + 160039680 [encoded data, 9491 characters]
s HiC_scaffold_1 133352402 8374 + 233722169 [encoded data, 9491 characters]

a score=105210
s chr3           146765713 5567 + 160039680 [encoded data, 6382 characters]
s HiC_scaffold_1 133367083 5903 + 233722169 [encoded data, 6382 characters]

a score=22055
s chr3           146776526 1931 + 160039680 GCCATTGAAACACAGTATTTACTTGAGGTGGGTGAGCATTTTGCTATTTTTACTAAATATCTGTAAACCTTTTAAAGAAATGGCAAACACCACAATAGAACAAGTTAGAAGAGTC-CATTAGCATAAGTGTAAAGGCTATAAACGATTAAGATAACAAAGCATT---TTCTCAGAACAGTGT-------GTCAGAATGAACCCATAGTCGTTATGTTTCCACAGAGTTCAAAATCAAACCACAGACAAACACAACACAAGGACTAAAAGAAACACAGCTCTCACACCACGAACTTAAGTCTTACTAAAAATAAGCAGAAGATGGTCAGAGCATGAAGAAAGGAATTGTGGGTTCTGATAAGAACGAACGATGGAGGAATGGGGTACTTTGATAGTCTTGTTAAGAGCTAATATCTGAAAGACATTATCTATGAGTAAATCTTCACACAGGAAGAAACTGCAAAAAGAAATTCC-TATCAGAGTACTGTGAACAAATATGGCCAAGCAGGGAATTCACTATTTGGTTATCATAAATTGTCATATTTGCTGTAGTTTTAATAGTGTTAGTCCGAATTAAAGACCCAACACAAACAAACAGAAAGTATGCTAGCTATACCGACTTCTTTGTAGAAGACTAA--GCAGATTAAATTATCCCCAATGGCATATTACAGATTC---TTTTGGCTCTTTTATCTAACGTGTCATTATGTTATGATTTCCCATTTTAACAAATGATGTTAATATGGCTGGAAATATCACTCGCCTACCCACCATGTTCAATTATACTCCCAGCATCACACACACAGACATGGGAAAAGGGGAGGGGACAGGAAAGGGACAGACATGCTATAGGCTTCCTGCTATTACAACCTAACACTCTGAATATTAAGGGTTATATTGCTTCTGATTTCTAATTTCCCCCAGAATCTTTATAATCATAATCTTTAGAATTTTTACAATCATAGTTTTAAAAATGAtttatttttatatcatgtgtatgaatgttttcctacaaaaatgcatgtgtagcacatttgtagccgatgcctaaggccagaaggggtctttggatctcctggaacaggaattccaggaggttgtggactgtcctgtgggtctgcgtactgaagccaggtcctctgcaagtaagtgctcttaactctggacaatttctctgacctcTATAATCAGTTTAGAAACTATGACATAATAAATATTAAAATAG--CTTTCTAATGAGTAGAAATTGATTATAATCAATGAGCTCATAAAATAGTTGCAGA----------ATTAAGAAAAGAGATTAAAAAA------------TAATTTAGAAGTTACAATTACACAAATTCAACGGACTAACAGATTGG---------GTTTGAA---------GAGCTTCAGAAGGGTAA-----------AGCTGACA-GCTATGACAG----------TCACATGAGCTATCAAGTTCC----GAGGACATTCGCATCCTAAG------------GCATCACAGCATTTGCTGTCGCGTGCACTTCACAAAAATTAACTTG-TGCTCACAAAGAAACTGACAAGCATTTCTTGGGAAGTT----CAGGCAAAGTGTTGTAAGGTCTTAACACATTTGCTCTTTAAAATGCTGCAGCTTAGACACTGTTAAGCGTG-AAAATCAATGGCTCACAACATGCAAACCTTTGATTACTTTCAGTTTTATATAACT---------GCTATTGAGGTAAGAAATATTGAAAAGGGAAGCACAATACATTTTCTAGGAAGACGAGTCAATGAATGTCAA---------------TGAGTCAGGACAAAA---GGAATTCCTCTGTGCTGTTACTACAGCC-GAATGTACTAAGGTGTGCACAGAGATAGCTATGACATATTT----TATCAATCAGGAA---CAATTAATTAATTAATTTGAAAGTAAAAGCTGAAACCCCTAGAAACAACTCTGTAGCCGATGCTCCATATTTATCCCTACAGAA-ACATCCCTGGAGAAGAAAAAACTTTGATTAAAGTTTATTCCATTTCCTATC
s HiC_scaffold_1 133385912 1670 + 233722169 GCCTCTGAAATGTAGTATTTACTTGTGTCAGGttagcatttttctctttttggttaaTCTGCAtaggcttttaaaataaattgcaaagATCACACtataataaattaaatgaatttcattaactc---tgtaata--tattaaattttaatctaACAAACAACTAAATATTAAGAAAAGTGTTAGCAATGCCAAGATAAGCTAGTAAGTTCAATGCCATCACAGAATTTAACATCAAA-----------------ATAAAGACTAAgaggaatataattttaaaatgataaaat-aaatcctATTAAAAGTAAGTAGATGGTA-CGGGAGCATAAGGAAGGAGACCAGGAATTCTAATAAGAACAAAAGATAGAGAAATAGGATGTCTTGGTTATTCTACCA-GAGTTGATATCTGAGAGAACTAAAGTATGAGCAAATTTCACCATTGTGAGAAG----AAAAGGCAATTCCAGACCAAAGTATCTTGAATAAGCAGTATTATAAAGGGAATCTATTATAGG---ACAGTTTATTGTCACGCTCACTGTAGTGTCAAAA---TTAGTTTCAAGTAAGG-CCCAGCACAGATAGA--AAATATATGGTAGCTATACACATTTCCCTATAGTAGAAAAAAAGCAAGTTAAACTATCCC-----ATATTTTGCCagtttagatttttaaacatttaattgatgttatactatattat---tttccattttaacaaa-----------------------------------------------------CTTC-----------------------------------------------------------ATTGGCTCTCCACTTT---AGTCCAAAATTCTGAATATTAACACCAATATTCTTT--------------------GAACATTGTTATTTGCAGTT------ACTTTTCCAACT----------------TTTATTTTTG----------------------------------------AGCACA-----------------------GAAGTAGATTTT---------------------------------------------------------------------------------------------------ATTTTCCCAGAACCTT-------GTTTAGAAACTGTCCCACAGTAAAAACTCAAAAAGACCTGTCAAATGAGCAGAAATTAAATACTATCAATAAGCTTATAAAATAGTTGCAAATTGTAATTgtatgaaaaaaagataatatggAAAGTAAGGTTTACTAGTTTAAAAGTTACAATGATAGAGATGCAGTGAATTAACAAATATGAAGTAAACTGTCTGAAAGATTGCATGAACTTCAGAAAGGTAATCAGAAAGGTCAACTCACATGATAAGATAGAGTTTAATACTTACTGTAGCTATCTAATTCCACCTGTGAAAATCTATATTCAAAATTGCTTATTTgttcaatataatatttaaatctaaGT----TTCCCTAAAATAGATCTGAAACTATCAGAGAAATAGTCTGTAAATTCATCGGAAGAGGAAATAGGCAAAATACTG----------ATCTATGTATTTCCTAAAATGTTGC-----AGAGGATAGTAAATATGTAAAGTCAAAGACTTAAAATG-GCAGAATGTGTATTAAATTCAG-ATCATATAACTCACAGACCAGTTA-TGATTAAAGAAAGACTGACAAGCTAATTAAAATAAGTTTGTTATAAAGAGATCTCAATGAACGTCAATATTCCCATTCATTCTGGATCAGAACAAAAAGCAGAATTCCTCTACGCTTTTCCTCTGACCTTCAAATAGTTATATGTGCATGGAATTAGCTGTTACATATTTATGCTATCAA-CAGGAATTCCTGTTACTTAATTTACTTGTGA--AAAAGATGAAACACTTGGAAACCACTATGTGGCTTTTATCCTACATATCTTCCTACCTACTATTTCATTAGAGAAG---GAATTCTGATTAAAGTTTGCTACATTTCATATC

a score=55585
s chr3           146780165 3736 + 160039680 [encoded data, 4155 characters]
s HiC_scaffold_1 133388377 3770 + 233722169 [encoded data, 4155 characters]

a score=3766
s chr3           146803570 79 + 160039680 GTTCATGCCAAAATGA-AGACAGGCGGAAGACTATTGTGACACGGACTGAAAGCCACAGGTTTCAGTCTAAAAGCTTCTG
s HiC_scaffold_1 118349825 80 + 233722169 GTATATGCTAAAACTATAGATGGGCAACAGACTATTATTGCATGTATTGAAAGCCACCAGTTCCAGCCTAAAAATTTCTG

a score=20038
s chr3           146804529 1324 + 160039680 CATCTTCCAACACTGTGGGATAACATTGTTGAAACTATACTAAAGTCTTGACTGTGTGTGTTCTCTGCCTCATAATTTTCTGTTGTCACCACATGTACTTGTTAGTTTTTAAAAACAA---TTCTGCTATATTCAATGTC----------------------AAATCAATCT--AAGTCATTTTATTGTTGACAAAG-TTCCCTAGGCGTGAAGTCCTGTTACTGTTTTGTACAAAGAAGCCGCTCAG--------------CGGCGCTCAAAGCCCTTCTGGTATGTTAGTGGCTTCTACTGACCCTCAACTGCTAAAGAGGCTACACCACAGACTGCCTTGTGCATTCCTCCTTTTCCCTCCGATGGCTTCTGTTTGGGAgacccctttggtggccgcttatcagatatcctgactagcaggcatttacattacaatgcataagagcagaaacactgcagttataaagtagtagcacgacaacttttatgcttggggacacacagctgaggaactgcgctgaaggttggcagcattaggacagctggggaAGCTGCTTCACAGCATCTCAGAGTGG-----CTTTAGACCCTTG-GTTAGGGCTTTTGGGGTCC--CTAGTGAGATGTAAAGAAGGTTTCCCAGCAATTCCACAACAG-CAGCTTCTT----GAGGTACTAGTCTTTAATCCAAAGACTTGAAGCATACACCCTGCACATGAATGATTGCTTATTCTC-------------ATTCCCACGCTGTCCCCTCCCATTTACTTCCATGGTAGCCATAGATGTCGGCAGTTTTACAAG--TTTTGCCCAT-----------------------TGTTTAATACTCAAAATT-------TACTGTAGAT----------------AATGCAG-------------ATGCTGCTAATGTGCTTTAATACTTTTTGGCAGGGCTTCTCTACACGCAGGTGGATCAAGCAGCTGTGT-GCTCAC-------ACAGCTGAGATGAAAACAGCA------TGGCAATTTTTCTGCCGCAACCTGTT-TTTAAGGTAATGCTAGTGTTTTCATTAAACTGTATGTAAAACCTGTTCCAAATTACTCTTCTTCCATCTCCCTGCCCACCATGGACTCATATGTAACCACGCTATAGCAA-CCTTCCCAGGTACACTGGTAGGTATGTATATGTGTGGTCTCAGAAAGTGCAGGTAGC------ATGATATGACCCGTAACAAGCCAGTAATGGTAGATTAGGTTATACTACTTACACTTGGATAAC--AGACCTCAGGAGAGATCAGTT--------TTTGAAAAACCA------AAGTAGTTTTTGGTTTTTCGTACCTTCCCTCAAATACAAATAAAAACAAAACGAAGTTT-TGCTTCATCTTTCTTTTTACTCAGCAATCCA-GTCAAGCA-------GTGTGTAAGGGAAAGCTGTGTTCATGTT-----TTTATTGCAAATAAAATACA
s HiC_scaffold_1 118365304 1277 + 233722169 CATTTTCTAGCCTCATGAAATA---CTGTTCAACCTATAGCATTGTCTTGACCTTGTGT--TCTCTGCCTCGTAATTTTATGTTATCACTATATCTACTTGTAAATTTTCTCCCCCCAACTTCCCGCTATGTTTTatgttggagagagagagagagagagagagatctatcTTGAagttgttttactatttagaaaaTTTTCCTAGCAGTGAAGTCCTGTTACTGTTTAGT------AATATGTTCTGTACTTTTTTACCCCCATGACTCAAAGCACTTCTGGTACTTTAGTGGTTTTTACTGATC--CAACAGCTCAAAAGGCTGTGCTACAAACTG---------------------------------------------------------------------------TAGCTAAATGGAAGATACAT------------------------------------------------CATTCTTCTTCCTTGG-----------------ACTGTTCTG---------ATCATCA-------------------TTTACAGCATCTCATAactgttatttttcaaaactttgcATTAGGGCCTTTCAGATTCATTTAGAAGAGGGCAAAAGAAGTGTTCTGAAAATTCCATGATAACCAGCTTTTCTGAGGAGAGTTTGCTTGTAAATCCAAAGACTTGAACCACATTCCCTTCA-ATAAaca--tgtttgttttttgggggaaaGGAGATTCTCTCATTGTCTCCTTCC--------CTATTGTAGGTATTGATACCTGTGTTTTTAGAGGAATTTTacccatttacatttttgttcttgtgtatgtgtgtgtttttaagaaCTGCTGACATACTGTGGATGTAGTAAAACTTGAAAAATGCAGTGTTGAAGGAATCATGAATATCTTGTCCTTAAATAATTTGTGGCAGGATTGTACCGTAAGCAAGTGAATCAAACTGCTCTATAAAtcacaaaaactaaaaccaaagtgAAAAGAGTAACTTCCAGGCAGTATCTCTGTTGTAACCTGTTACTTAAGGGAATACTAGTGTTT-------------TACAATATTTGTTCCTCATTAC---TCTTCCGTAGTCCTGCCTGCCAAGAACTTAAAAGCAACTGTGATATAGCAACCCTTCCCAGATATATTGGCAG----GTGAATGTGTGATCTCAGAATACACAGGTGACAGAGATATGATAGGAT--------AACTGATAATGGTGGATTCATTTACATTGTTTACACTTCTGTGACCACGCCTTAAAGGGaggtcagttaaaaaaaaaaaaaaaaaccaaaaaacaagtaG----TGTCTCTTCCTATCT----CCAGATACATGTTATAAAAGAAGGGTGTTTATGCTTCAGCTTTGTTTTTGCTCAATAATACAGGTCATGCAAGAGTTTGTTTCTAAGTGAAAGCTGTGTTagccttttttgtttatttcaaataaaatgta

a score=36578
s chr3           146809672 2655 + 160039680 CAAAAACCATTATATAACCACTGGGGTAGAGGGTGGCTTTCCTACTC-TACTCATGGGAGAATTAACGCCCAGCAGTTTTCACCCATTGACCTGGACATAGTTAC-----ATCTGTAATACATAGCTCCACAGACAGCTTGGAGATGTAATATATTTTTTAAAAGAA---CAAAA--------AGCATGGAGTTTTTTTGTTTGCTTGTTTTTCTTTTTGTATTAATAAGGCTATGTGAATAACATACTTAACTCAAAAATAAAACATTCTTGACTTACAAGGATTGAACACATCTCTGAGACTTGTAGCCTCCTGTTTCTAAAAGTTTAAGGTTCTGTGTATTAAATGATGAAAAATAAGTATACTCAAATTTTGGAAGACATTTATTT-CAAGAGTAATTTTA-AAAACACATGGGAGACTTATATAATGGCGAAAGTTGTTCT-----------------------TTG-------------------AAACACCCAGTTCTCTGA-GGAATTCAAAGTAAT-TTATGTCTAGAAACTGTGATGATCAGAATGGAATCCTTTAATTTTGTGGGTGTAGGAGCAAGGCCCTGGGTGCTCAAAGCTAACAAGaaacaaaaccaaagcaaaccaaagcaaactaaaacaacactgacaaaaacacaacaaaacaaaaaaaaaaaaacacccaaacaaaacaaCCTCCCCCAAACAAAACAAAAACAACCCCCCAAAGCCTGTTCATTTACCTTTATACCCA------ACTTCATTCCTTGGGAGTATTTTTAGAATTAAGCTCTAGAATTCCCTGTCTGTGGGAGGCACTTCCTC-ATCAAACTGCAAATCTTAC----CTTCCTATCTTT-AATTAGCTCTTCAAACCAAACACTGTGCTGCTGGTAACGTCTTGTGGTCTAA-TTTACTCTC--AGCTCCAGCACTG--ACACTCTGCCTTTCACCTGA-TGCTA----------------CACAGTAAGTG----ACACTTTAGGATCTTGTCCACAGGTCTACGAG--GAAACCCAAGCAGGTGGTAGCTACTCTGAGAGA----GGACAGATTAATTAGTGATGCAGAG-GTAGTCAGAGCCTCAGAGCTGTTCTTTACTCTC-TCGTTGATAACATGATCTCAATTCTTGTTTCTTCAGGTCTGGCACTTGGTTGGGTCTTGAGTTAGGATGATTTCGTAGACTAAACTCTTAA---GTGTATCTCTTAAAGTGTATTCTGTGTATCAAGAGAAATTTAAATGATTACATTTAAAATATGAGCCACAAATTTTCAGGAATAATTCATCTGAAAAGTACACAGAAGAGTTGGGGACAGAGTGGTAAGCCATGTTCTGTCATTACGTTTTATGACATTGTACCACTTC-----TTTGCTAC---AGAAGAGCACCAGCACAC-CTGGCTGACACTTCCCCCTGTG-AGCCCTGAGAGCTGAGCCAT---GACCGTCTCCTATA----TCCCATGGGA----CATCTGCTGTCTTCTTTCGACACTTCACAATATTTTTCAAATGATTCTAATGTTCTTCAGTTTCTATAAATAA-------------------------------------------------------------------------------------------------------------------------------GTTCACA------------------------------------------------CAAGACTTTGTCATAGCTGCTAG-TTTAAATGCATATCG------------------------TCTAGGGGAAGTGTATAGA-CTGCTGGAGAGTGGACTAT---CATTAAAAATATAAGAACTGTGCAAGATAGCACTTGCT----AAGAAAATTACTGGGCTGATCCAACTATCAAGCATATTTTCATAACACAATTAGCATACATTGTACAAGAGAAATAGGGGAAAAGCAATGTTACATGGATATAGTATTTTGTC-----------ATACTTCATTTTTTGTGAGTCTGTACAATTAGTTACTACATTTGCACAATTACTAAGATAACAAGGAAGTCCTAATTCTACATCGGCTTTTCAAGT----TGTCACATGCTCA------------------CCAACAGTTTGCCCTGCTGTTCCATGCCCT--------GGAACGAACCTTATTGATGAAACATAACCCGTTAAATCTGACTGTTGTTTACATTCCACAAAAGCAATAGCTAGACTCTCTTCTGTCAACTCAACTCTGCTTTGTTCATGAGAATCAAAAGCTGTTTGCTTCAAGCT-AATTACAAGATTGGCTTCATTCTTCTGTTATAAACACAGACACAATGGAAGACGTTACTTACAGTAACACGAACAAATTGTCAGACTTACTTCAAGGACTGAGATGTCATTAACCTATGGCA--ATGTAACAAAAGTCAGGGACCGTTCTCTAATTATTGTGAATTATAAATTATAATATGAGCCGAATAATGGCA---CACAATTTTC--TCACAGC----CTGTTACACAACACGCATATATGTGTA---TGCTTACATATAAAACCAAGTTGCTACACAGAAACTCAATTCCCACGACCCTTTTGTCTTGAAATTTT---------GTACACAGTACTGAACGTCTGAACTTTCAGCTCTCGGAAGA-----------------AAGCACTT-CAACTCTGAAATGC-CTCTAAGTTTTACAGGCATCCTGGAACATTCCTGGATGTCTAGAGTAAACGCAACGCTGTCTCACTTATTTTTCCTCGAATGGATAAAGTTGCTGCTTGTATTTATGTCTGCCATCTCTAATCTCTTGGGTGAAAGAAAGAGCCTTAGACACTAAGGGttaacgtcacctttggagaccctcacg---gacactcaccttgtgagaaaactgatataca-tccagga-----gaaggagaaaaagccaagtcaacccaaacgtactacctgtggctcccttaaaggagggtctgggtgttGGGGGCTCTGGGAGAAAGAAGAGCTAAGGG
s HiC_scaffold_1 133431772 2862 + 233722169 CAAAGACTATTATGTAACCCTTAGGCTGCAAGGTAGCTTGGCCACTTGCAATCATCCAAAACTCTAT---CAACATTTCTCACCCATAAGACCTCATACCTTTACCATGAATGTGGAGTATGAGGCCCTATAGGCAGTCTgtagacttaat----ttttaaaaagaaaattaaaactcctCTCAGGATAAAAGAATTTCATGTG-----TTTTCTGTGTTGGTGACTGATGGTGAGTAAA-AGGAGACTGAAT----AAGTAAAACAACCTTGGGTGACCAGAGTGTGCAATACCTCAGAATTGAATTGTCACACTTTTCTAaaagtttatgcttctttatatTAGGTGTTGTGCAAC---TCCATTCAAATTTTGAAACGCATTTATTTTCAGGAGTAATTTTTTAAACCACATAGAACAGGTAT--------GAGAGTTGTTCTGACTATTAACTCTAACCGCTACATTGCTTTATGAGCTACATCAATACACTCCTAGTTAGATAAAGGTATCCAAATTAATACTACGTCCAGCAACTGT-----TGAGAGTGGAGTTTCCCTGGTTTTTATGTTTTAGCCTAAGA------------AATCTTCACATGTATTAGAG-------------AAGCTGGTTTTAATA-----GACTacaacacagcca-------------------ccagatag-----------TTAAAGTAAACCAAACC------------CCTTCTCAACTATCTCTATTCTTCTGGAGTATTTTATTCTTCTGGAGTATTTTTAGAACTAAGCTCTAGAATTACCTGTCTGTTCCAAGCTTCGCCTTAAACAAACCTTAAATCTTACTTAACTTGATACTTTTAAATcaattctt-----taaacattttcctATTGGTAATTTTCAGAGTTCTAACTTCATTTTCATAACATTAGCACTGAAACATTTTGCCTTTCAGTTAATTGCTATATGCACAGCTTCTCTCACACTAAATGgtaaaaattttaagcatttgCTTTCAGTATCCCCAGCTGAAACTACAACACTtggcaaatattttgaaagaacacGAACAGATTATTTAGTGATGCAAAATGGAGTCAAAGTAACAGATCTGTTCCTTACTGTCATTATTAACAGTATGATGTCAATTCCAGCTTCTTCAGAGGTCACACACATT----CTTTGAAATGGAATAATTACACAGGCTGATCTCTGAGACCACTTATTTCTT--AGTTTATTCTG----TCAACTGAAATTTAAATAACTACATTTaaactctgaaaaataaatttccaagcATATctcttttgaaaa--acacaaaataagtgtGAAATAAGT---------TATTct-tcactaaattttaaaacataatacaattttttttgtttactaCAGTAGAATAACACCAACATATACTTGATAAACTTGCTCCAAATGAAGCTACAAACACTGATCAACACGggatatttcaaataaattttccttGAAGACAtcatctgttattttcttttgtcatttcaca--ttttttcaa---attataatgaCTTTCAGTTTCCATAAATAAACCATACAGAACAGGCATGTAATGGTGAGTCTTCTATTAACTCTATCTATTATACTGATATATGAGCTACATCAATACTTAAAGCGCTGGCCAACATACTTAAGATCTAAAACTTTAGAAGGtatttattcagaaaaataatgtaaataaatttaGGTTGTCGCTGTTTTctgtaaatattccaaaattatgTCACAACTATAAGCTTTAAATTAATGTTAAGAGGCAAACAGCTTTGGTAACTTTGTAATTGAAATAAATAGATCAAAAAAAGGATGCACTCTTgctattaaaaatgtaaacattgtatagCATAGCACATGCTGATGAAAAATATCACTGACATGATTCAATTACCAAAC--ACTTTTGCAACAGGATTAGCACAAGTTTTATCTTTAACATAACTTTAAATTA-----ACAAGGAAATGACAATTTGTCTGACACAAGTAATTCTGCATTCTTTACACTTTTGTACAGTTAGTTAAAACACTTGagcaactaaaaatatttt----aagttctaCTTATGCCTTGCCTTTTAAAACTCCATATCACATACCAAAGCAATTTTATGAGTCGTATGATAGTTCATCAAACTTTTTGTGGAGCTCCTAAAAAGTAACAAGTCTTACTGGTGACATATAAACTATTAGTTGATCTCATTATTCAcattaaacaaaatgaatgagtaaatcTTAGTTGATC------------------CTATTACAGTTAAAAGCTAT----TTTAagctaaattataaaattagCCTTA---GTGTgtttcaaaca------------aaaacattatttaCATGAACTTGAGTAAATTACCAGGTTCACTTCAAGTAGTGAGATTCCATTTACTCCTGGTGGCATACAGCAAATAGCAAATACTGTTACTGAGTCATTGTGAAGTACAAAATCAAATCTGATTCTTACAAAGGCAAATCACTGTTTTCTTTCACAACCGTTCTGTTAC-----------ATATGTACAGAGTGTttacaaataaaatc--------atacagAAACTCGacttttatgacttttttttttttttttttttactgtttgatGTGAAGTGTAGAATGCCCGCGCTTTCAGCTTTCAGAAGAAATCAACCGTGTTCTGGAAGCACTTGAAACTCCCAAAGACTTTTTAAGTTTTACACGCATCGTAGCAGATTCGCGGTTGTCTACAGAAAAAGCAAACCTGCTCCGC---TTTTTTCTCTAATGGACAAAGGTGCAGGTGGCCTT---------CATCCCAAATC---TGAAGGGAAGCAAGAGCGCTA-AGACTCAGGATTAACCTCACCTGCAGATAGCTACGGGAGCGGCCCTCGCTTTGAAAGGAGACCGGATTGGACTCCAGAAGTGATGGAGGGAAAGCAGCCTACTCTACCCGCA-GCACTACCTGTGGCTGC---AAAGGGGAGATCAGGTATTGGGGA---TGGAATAAGGGAGGAGTGCGGG

a score=13588
s chr3           146837461 528 + 160039680 GAAATCTGAGTACTATTGGCAGGAAGTATGAGAATCTTGAACTGGGCCAGGCCCATAGTGCTAGAGACGGAGAA-------------GAAAGCCCCCAAAGAGATCAATAGGCTGAGACATAGCAGATAACTGACTGAAAGGCTCG-ATGGGCAGAAGCACTCAGGCGATCACCAT-------------CCCTGGGACGAGAACCTAACGGAGTGTTTTAGAAATGCACACTGAGGTC---ATGCCTGCTTGCTGCTCCTGATATCtgtgaccatggataactcgatcgtctttgtcgagcctcaatttctcatctgcgaaactgagctgatcacatca-----atcacaggacagttggaagaGGTATACACTGTCACCAGAGACAGGTTTTAGAGACCACTGGAAGCACTTTAGGGAGCTGGGGAATACATTAAAGATGGACCAATGTGCAGTTTTACTGATACCGTGTTCCTGGAAT-AGCAGGCCAGATGGGGAAAAGAGTGTAGGTGTCTCCAGGGTTTTTGCAAAAGAAATATTCAGGAAAATGTGTGTACAAGAAAA
s HiC_scaffold_1 133519827 548 + 233722169 GAAATGAGAGCTGTCTTAGAAAGATGCAAATGATTTTTGAGCTAGTGCAGG-----AGAAATAGGAATAAAGAACCGAGTATAAATGGAACACCATTCTGGAGACCAAAAGCATGAGATGTGGTGGCTGTTTGAATGAGTAGCCTGCATGAAAAGAAAGACTCAGATGGTTATCAGATTTTGAGTTTTGCGCAAGTAGGAAAGTACAGTGAATTGTTTCAGAAATGCAAACCTAAGTTTCAGTTTCTG-TTACTACTTCCTATAACTACAAACTTGGACAAGTT-ATCTTACCTTTGAGCCTTCAAttccttatttgtaaaactgAGCTGGTAATAACATTACTATCATAGAGCTGTTGGAAGAAGT---TACTGTCTTCAAGGCTAGGTTTTAGAGATCATTTAAGGCATGTCAGATAGCTGGGGAGCACATTTAAGATGGATCAACGTACTATTGTATT------GTGTTTCTAGAATAAATAGGCCACATGGGGAAGAGAACATGGTTGTCTTCTTTGTTTCTACAAATTAGATATTCTGAAAAATGCttacagaaaaaaa

a score=13537
s chr3           146838757 589 + 160039680 AATTTCTTTTTTTTT----TTTTTCTGAGAAAATTTTATTAGCTTTTTGGATCAAG-------TTTATTTTCCAGGAAGGATGATTCCATCGTACTTCTGCTGGAACCAGCGCATGGCCTCCTCCTTGCTGATTCTGTGTTTGGCCCCAATGCAGCCTGTTCTGCGCTTCTTGTCTGCGATGCTGAACCCTGGCCTACCCAGCACCACATAGAAGTCCAGGCCGTAGAT--CCCAATGCTTGGGTCGTATTTG--------------------------ATGCCCAGGTCA------ATGTGTTCTTG-AATTCCAAAACC-------------------------------AAAGTTTCCAGTATCCGAGAAGTTATTTTTCCGCAACTCATACTCCCGCACCTTCAGGCCTTTCTCCAGAATTTCCTCTGCCTTGGCTCCGCGGACTGTGCAGTGAACAGCAATCTTCTCATTTCTCCGGATGCCAAAGGACCTGACAGTGTATCTAGCTTTGGAGAACACCGGGGTCTGGCCTGTGAGCTGCTCCAACACCTTGGCTGCCCGGGTCAGTCTGTCTCCGTTCTCCCCGACGCAGATATTGAGGCAGAGCTTGCGGATGCGCAGTTCCCGCATGGGGTTCTCCTTTTCCCCTTGATCTTGCGCCA
s HiC_scaffold_1 175344163 571 + 233722169 aatttttttgtttttagcatttcactgaaaacattttattggCCTT--GGATAGAAATGGCTCTTTACTTGGTACGACAAATGATCCCGTCGTGTCTGTGCTGGAACAAGTGCCTAGCCTC-----TGCTGA--CTATGTTTTCCTGTGGTGCAGCCTGCCTCACGCGTCCTCTCTGCAGAGTTGAAACCTGGCCTCCTCAGCACCACATGCAAGTCCCTGCCGTAGACAGACCAGCGCTTGGGTCGTGTTTGATGTGCTGCTGGCGCCCAGAGCCACAATGTCCACGTCAGGTGTgatgcgtgcctgtaatcccaccacttgggaggctgaggctggagagctTCTGAGTAAAAGTTTCCAGTATT--AGAAGTTACTTGTCCTTCATTCATATGTTCACATCTTCAGAC------------TTTCTCCCACCTTG------------------------GCAGTCTTCC--TTTCTCCTGATGCCAAAGCATCTGACAACATA----------------------------CCTGTGAGCTCCTCCAATA------CTACCCTGCTCGGTCT-------CCAAACCCAACGGCAGTGTTGAGGCAGACCTTACACATGCTGAGTCCCCGC-TGGGCTTC----GTTGCCCTGGCTCTCACAGCA

a score=14014
s chr3           146841033 812 + 160039680 AAAGGAGTTGGTTTTGTTTGGGTTGTTGTTTAGCTCACACTTCT--GGGGTGGTGT-GGAATCACAGTAGATATATCAGAG-------------TAGCAAGAATGTGTGTGGGACAGAACAAGCCCATGGCCAGACAGGAAACCAGAGAGTAACTCAGAGGTCAAGATGATTCTTATAATAACTTGATCTTATGAGAACAAAGTTGGGGTCTCATAGGAACTAACTCTTTCCGACCACGACCACGGCACCTCCACTAATGTAATGACTTGCAA-----TTGCATCTTATCTTTCATAAAAGGTCCCCACCATCTCCCATCGCTGCCACACCAAACACTATAATTCTAGAATTTGA-----GAGTGACAGTTTCAATGCCGTCCCTGTCAACAGCTCATCTTAGTCT-CTAACTGCTTCCATGGCCCTA--GGCAGGCTCACTCCAGTGTGTAAGACACTGAGGTCTCTGCAGC---TTTTCCCTCCCTTCTGTAAGGCATGCATGTGTCTTTGTTAGCATATGCTTTCTCACTCTCCTCCAGCCTCATTGACCTAAAACAGTATATCTAAGGCTGTCACATATCAAAAT----------ACAACATGATATCATGCATGATACTAC------------ATAGCACAGTATGAACAATTGTGGGAAGAAATCTGATCCA-CTCATAATAAGTGCTACAATATTCAGTCTAGTGTGATCAAGTAGTCCCAACTACCACAGTGCCAAATCCAGGATTTAAGATGAGTAGAAATTGGTGACACTCATAGTTATTTCAATATATCAGTGTCTTCATCAGGAATAGAAATGGGTAAACAGAATCTTCAAAGCCTTTAAAATTTTGGTTATTTT
s HiC_scaffold_1 133523480 791 + 233722169 AAAGAAAaggtttttatttggtttgtaGTT---CTAAAAATTCCTGGGGACGGTGTTGGCATCAGTTTAGCTCTAGTGAGGACCTTGTGATGGACGGCAGAAGCCTATGTAGGAGGGGGCAATCACATGGCCAGACAGGAGGTTAGAGAGTGACTCAGAGGTCAGGTTCACTCTTGCAGCAACCTACTTTT-TAAGAACTAACTCAGAGTTCCATAAGAACTACCTAATCCTTTTCAAGAGTA--GCAGTTTCTGTGATGCAATATCTTCCCAGGAGGCTGCATC-------TCTTAGAAGTCTGCCAGCAACC----------------------------TTCCAAAATATGAACTTCGGGCAAAAATCTCAATGCCTCCCACGTCAGCAGTGTGTCATACTCTCCCAGCTGTTCCCATGCATCTACTGGCAGACACGTTCCAGCTTGTATGACAAGGACAAATCTGCAGCCAGTCTTTCTTGCCTTCTTGATGCTGTTCATGCTTCCTTGACAGCCT--------------TCATCCGGCCCCACCG-CCTGAATC-------CTTGGCTTGGCATATG-CAATATGTTGTGCTGCATAAC-TGATATAGTGTGGTGTATCACTAAAATACTTTTGTAACACAGTATGAGCAAGCTTGGGAAGAGATATGATCTACCCCATAGTTAGTATCTTCATATCTAA------ATGAGAAACTGATTGAGACTGTCACAGTACCAAGTTCAGAAGCTGA-ACTATTAGATATTGATGacaaata---tcatttttatacaCTTATTTCTTCTTCAGAAATATAGGCAGATAAATAGGATC-TAAATTTTTTCAACACTTTGGAGATTCT

a score=14419
s chr3           146842586 677 + 160039680 ATATAGAATGCTAATCTACTTAGCTTTGGCAGTGAACCAT---GGAAGGGGTGCAGAAGA----TAGCACTAGGGAACCCAGATGAACTCACTGAAATAGCAAACTCAGTGTGTGTATTCGTGAGTGATACTTTAAGAAAATGAGATTCTGTTGCCTTAGGAAGAGAACGATTTTGTAGAGCTTGAA-ACA-GTTTCCCTTTTGGTATAAATAGATGACTTGCAGTGAT----CACTGTGTCCTGAGAATACTGTGGCATCT-TTGGTCTTGGCTGTAACTTAAGGCCAAAGGGTAAGTTCAAAGGCTGTGCAGAG-TAAACCTCACACGATTATTTATTGTGAGCCAGCTTTCTCTTCC-GGTGCTTCTAAGGAAACTACCATTTTTGGAATCTTGAGAGTGAGCCCAGAGGTCACCAAG--GACAGCATGCTGTTTACTTGGC-AATGGGTTGGTTTCCTTAAGAATCTGGCCTTTTAGTGAAA-TGCTTGCCTGGGACACTTGGGTCCTTGAATACGGTGGACCACACTGGCTTCACTTCTGCC--ATCAGGCAAGAGACTTGGGGAGTAAGGGGGAGAGGTATGT------AGACACTGGA--GAGAGCTAGCTGATCACAGAAAAACTTGAATAATACAGTTGCTAGGTTTGTATCCTGGGGGATGTTATTTAATATTTTGAAAATATTAGTTTTCCtactt
s HiC_scaffold_1 133530841 681 + 233722169 ataaaaaatgcaagtctacttttttttggcagtgagtaataaaggaaaaaataaaaaaaaaaaacagtattatgGAAACTACTTTTACCAACAGAAAATGCCAGATCATCATGTGAATTGTTCCATGAT---CTGAAAAAAGGGGTTGGCATAGTATTCGGAAAAGAAATACTCTGtgaagtataaatatatattttcctctgtttATAATTAGATGAATTTCAAAGATTGTTCTTTACGTCTTGAGAATGTCATGGGGTTTCTTTATCTTGGCAGTGACTTAAGGCCAAAGGGCAAGGTTGAAGGCAGTACAGAATtacatttcat---attattt-tcatgaGTCAGGTTTTTATTCCTTGTGCTTCTAAGGAAATTGCCCTTTTTGGAAAC-TGAAAATGGGTCAAAGGGTTAGCAAgtttatattgtattatttacttGGCAAATGGAATAGTTTTTCAAAGGAATTGGCCTGGTGATGAAACTTTCTGTCTGGGA----TGATTCCCTGAATGAGATGgactatttt--cttcctttttaataaatcagttgaaaaa----------aataaagatgggtATGTGTTCAGAAATACAAGATCTAGACTTAGATATATTTAGGTGAATCCCACTTTGCCAGTTTCTA-GTGTGTAACCTGAGAAA-GTTATTAAATGTGTTGAAAATTTCAGGTTCTCTATCT

a score=30727
s chr3           146844063 2501 + 160039680 AGTTTTGTAAAAT---TTATTATTAGCTTGTAAAAAAAATGCTGCAATAATCTATCAAATTTGTAGCTTTAGAGAATCCTTTAGAGAAAAGGGATGTTGGTTGAATTTCTTTAAATAAAAAACAGAGGTGGATCTGATACACTGAGTTGTTGATATTAACACATTGTCTCACTATAATTATCATCTGGATATTTCAGTCTTATTC-----GTAATTAGACTTGCAAATTACAATTAGCAGATTAAGGTGCCA-GTCACCAGGAATGACAACCAGAAAGCCTTGAGCTGTGTTCCTC--ACAGCATGAAGAATGAGAGTCTGGTGGGATAACAATGGCCATGTTCCCTCT--------------TCTTGTTTGGTGGCTATGCCAAATACCA-----CACTTTGTACAAGAGGCTAATAAGAGTTTGTAGCCTGCAAACTCCATCATAAACC--TAAGTTCAAAATGAGTAGAGCCAATATTTGAATCCGCGAGCGTGCGAGTGTGCGtgtgcgtgcgcatgcgtgtgtgcaggtcaggcttcactttttggtgttgctcctcaggtgctctctaccttggttttgagacagagtctctcactgattgggaacctgtcaaattggagaggctccctagcaaacatgtttcataggcccgcctttatcttcttccccagcttcaggcttgtgagtgcattctactgtgctggctttgtaacatgggttccggagatgaaactaagtctccgtgtttgtaaaacaagcaactgaagcatctctcTTTTTCAGTCTGCTTTGCT-GTGGTTTAGTTTGAATGACTCCTACCCTCTGTGAAAAAGAGATGACTTTGTGGAACCTGAGCGAGATAAACCAGTTAATCCTTGGATCCGTCAT-CATTCCTTATGGAGTTCTGGAGAATAGCCATGTGTGACATAATTAATAAGAGTTTTCCCTCACACTTCAAAGGCTGCATATAAAAATGGAGACACAGAGACCATGCG------TGGTCCTATTTGC-----TTCTGTGGCTCCTGGAGTTC-ACTCAGCCTGTGCTTGACTTGTTTCAGGGATGGGGTTGAGGGGTGCGGGGAGAG--GCATAGGGAGAGGGAAAGACTCCATTGGCTCAGATGCTTGCTAAGTGCACTGCACACTTCTC---TGCTGGAGAGTCCGGGAAGGCAGTCTC--CTGGCAGCCAGGCTCTTGGTG-------ATGCTGGCACTGCTGATCCTGATGATAAAATCCCAACCTTAATGTGGGACCGGCTGAACCCAGAAGAACAAATGAGCAGAGGGAACTCCCAAGTTCCAAGTTAAACAACAGGACTTGCTCATTTTTGTCATGGAAGTCCCAAATATTA--GCTTTGTTTCTTACTGAGTTTCCTGTACGACAACCCTTTACTAGTTGCCTGATTCTCCAGCATCCTAAGATTTGAACCTAGGACCTGGACCGACAGTCAGTGTTAACAGGAGATACGAAGCTAGCGCTGCAGAATGGCTTAGTAGTAAATTACTGAGCTTTAGCCTAAGCataaaaaaatagtaaaataaaataatataatGACATACTCAAATTAAGTGTCTTTGGAGAATGGCATAGTTACCGAATCAAAATGTGCATAACTTTTTCACCCTTACAATGGGT---TATTTTTGA------------------TCAGGAGACCCTACAAGTCTTCATTCAGATATATTTCTGGCTGGTTTTGGTCTTCTAGGTAAGTCCTAACTAATCATCAAAGCCTGTGC-ACCTTGGACT--GACAGGCACCCCGGCTT-----TCTTTCATGGAGCCTATTC-ATAACATGAACCTATGTGCTAGAACATGCAGTGACTATTACCACAGACAGCCTGGCTCTATGCAGGCACCAAATGGATGAATGACTCAGATCTGATGTCTA---CTGTCTgctgtcccaatgccaatatttaagcatcaggtaaaacctctagagccataacccagttcttagggaaatgtagggagatgt-----taattgagattaactcattgcctgacagagggagagattcaaaccagagttaacttgagttataga-aaacaaTT---TGGCCAGGGGAGAGCGAATAGATGTTGATACAAACACAGCTCCTGTTTCCTGCTTCTTGAGCTCTT-TGTAGTTACCGGGTAAGAATCTTGTGACCGATGGCCTGTCTGGGTAACTGG-GTGGAAATGAGTCTCCAGG-TCTGTTGGGCATGAAGAAGAGGGAAACCAGCACACCCTTACTCCC--AAGGCTCAGGCAAGGAGCATCATTCTGGAATTAGCTAGAAGTGAAAGCAGC--------------GGCCACTGGGACCGTTG----GGTGGTTGGAAGTCTCTGGGTTTCAGGACAGAAGACAATGTTGGCTCCGATCTCCTTGTCCTCACAAGGCCATGAAAGAACTATGCCGGAAGCTA---CTTCCTGTTTCCAAGGATGTGAGAGTACATGGAGATCTGTGAGCAGGGGAGTTTCCTTCAGGGTCTACAATGGGATGTGGAGGCC--ACTGCTTGGAACCACAGGCCTCTGCTCTTAGAGAAAGCTTCCTCTTCCAGTGCCTGTGGTACTCCTGT
s HiC_scaffold_1 133531595 2155 + 233722169 AGTTCAATGAAATCTATTATTATTAGCTCTTT-------TACTCTAACAGTCTACTAATCttatagcttt----------tta----aaagtgatttaagttaaattgcattatattttta-tagaGATGAATTTGATACACTGAGATCCTGTTATTAACACACTGACTTACTATAATTACCAACTAGAAATTTTAGTCTCACTCTTAAAATAATCAGACTTGAAAACTGCAAT-------ATAAGAAGCTGTGACACTGAGAACTGCAAACAGAAAACCTTAAACCACACTTGTAAGACAGTA-GAAAAAAGAGAGTTGTACTGAAAAACCAAAGCCACGTTTCTCTTGTGAATCACAGTACCCTAGCATGGCAGCCACGTAGAAGACCAGAGATCATCTTCTCTGAGAAGCTAATA--ATTCTGCAGTCTTCAAATTGCATCATAAAATTGTGGGGCTATAATCAGTAGAACAAATGTTT---------------------------------------------------------------------------------------------------------------------------------------------GGGAGGTT------------------------------------------------------------------------------------TAACA---------------------------------------------------------------------TCTACTTTGTTAGTGATCTACTTTGAAGAATTCCTTCTCTAAGTGAGAAAGAGATGGCAGTATGGGTTATGAGCTAAAAAAACTGGTCAGTCCACGGGCCAGACATCCATTACTGATGGGACT----------------------AAAGTT-------GTGTCTTCTTATACTTTTGAGAC-AAGGGTAAAAATGTCAACACAGTATCTACCAGTAGCTTTGGTCCTTTCCACACTTTTTCTGAGATGCCCTGAGTTCTACACTGCCTGCTTCTCAGTTATTTCCAGGA--GAGCAGAGGGGCTAGTGGAAAGTTGCTCAG-----------------CTTGGGACATTTGATTAC------CATGGCATCCTTCCCCTTTACTTGAGATTGGAGGAAATCTGACTCTGCTGCCAACTGTGTTGCTTGTATCCCAATTTGCTGACACTGCTGATCT---TGATAAAGTACTGTCCCTAAAATGGGTCCAgttgaaattaggaaaacaaacaagcagCAACAACCC-------TTTGTTTGAGCACAATGAATTACTTGTTGTTGTTATGGAGGG-CTGAATGTTACTGCTTTGTGTTTTACTCAGTTTCTGGTAAAACAAGATTTTAGT--TTTGCTGAGTCTTTA------CAGGACTTGAACTTGGGAACTAGGCTGAGAGATAATGGAGGCAAATGGTATTAATCTA------------CACTCA--AGTTATCTCTTGAA-TCTGGC--AAAAATGAATGGCTATTGAAATGAGCttgt--------acattttactttttttccttt--aggatgatct---------------ctgtctgtctctctctctctctctctctgtctctctgtctctgactttgTCTCTCTCCCACTCCAGGGAAGCTCTTAGTCTTTCATTCACATTTATTCTTGGCTGACATTATTCTTCTGGACAAACC----TTAATTTTCAAAGCATGGACTACAATGGCCTCAGCCAGGGACCCTACCCTCATTGTCCTccatgtatcttttttaaaaacctgaaaata-gtGTTACAACATGCAGTAGAAACTA----AAACAGTCTGTCTTTATATGGGTGTGAAA---ATAGATGACTCagatcagatgcccatttctatTTACT----------CAGTATCTCAGCATCA----------CTA-ACTCATAACCCAGTTCTAAGAAAAATATGGGAAGAACTTGAACTGATGGAGAGTAAAATATTGCTTGATAGAGTGAGAGATTGAAATAAATGTTAACTTGACTtatacacacacatttttgtGGTTAAATGAGTTTGGTAACGTGTTGACACAAACAGAGCCACCGGTTCCTTCATCTTCAGCTTTGATGTATCTATCTCCCAGGAGCCTCATGGTTGCTGGCTTCCATGGGCTGCTGGAATGGAAATGAGGTATCAGGTTCTGTTGGGATTTTGGCTGAGCGAAGTAACAAAACCCTTTCTCCCCTAAGGGATGGGAAAGGA-CATCATCAGGGAGCTAGTTAGAACTAAGAGCAGTCTAGTTAGAACAAAGAGCAGTGGAGATGAGGAAATGCTGGTTACAGAGCTGTGGGTCACTG--CAGAAAACAATGTTGGCTCAAATCTCTTCAACCTCATCAAGCCAAGATAAATCTGTGCAGGAAGCTGGATCTTCCTGATTCTTAAACTATAACAGTACTAGGAGATACGAGACCAGTAGGGCTTCCTTTAGAACCTGTACTAAGGCCTGGCAGTCTTTCTGCTTTAATCTATAGACCCCTGCCATAAACGTAAGCTTCATCTTTCACTGTCTGTGGCTTGCCTGT

a score=83320
s chr3           146847893 11304 + 160039680 [encoded data, 12865 characters]
s HiC_scaffold_1 133536129 10996 + 233722169 [encoded data, 12865 characters]

a score=10085
s chr3           146865418 525 + 160039680 GGGAAGGCCAATCCTCCTTTTTTTTTTTTTATGAAATGATTCTAATCTGCCCATCTCATTTGCATTCTGGATTGAGTTCTCAGGAGGAACCCTCTCACGAGACTTTGTCCTTCA--------CATCTGTTTGTGAGGAACTAGACAGATGTCCTGGAAAGATGAGAAAGAAGGGCTTTTTGGAGTCCTAAAATCTTCTGGGC---------CTCTTAGTAACTGGACCTCCCTTTCCGATGTGGTG-----------------------GTCTA-TTGAGCAGCTGCCTTAGATTTCAT-ACAGATTAAACATGGTGATTCTGCCTCTGTGCTGATTGGTTATAGCCTTGGCAGGTGAGGGACGTGTTCAG-GAGGACCAGCTTCATAGATTAAAAGGAGGGGAATGGAAAACACTGGTTTG----GGGACTGCTGTAGGGCATAGTACCCAAAGTATAACCTATATATGCAGGTGAAATTGTCACACCACCCCTGGA-------------AGAACATGTGGAAAACATTGCTGTGCTCAGAAAAATTAACAAGATGCAGATGATATTTCCTGGAATCATGGTAT
s HiC_scaffold_1 133561839 548 + 233722169 GGGAAAGgtagtc----tttttttccttttgtttaatgactatattttatgtatct---ttaCACTTTTGGTAGAGTTCTAGTTA--------------AGGCTTTGTCCTCTGGTTGTGATCTTTTGTTTGTGATGAACCAGCTAAATGGATTGGGAAGCTGAGAAAGAAAAGCTTCAAGAGTTCCTGTAGTCTCCTGGGTACATTAGTAACATTAGTAACTTAATCTCTTTTTCTGAC-TggtgtttgtatcatttttaccCTCACAGTCTACTTAGGCAGCTGCCTCAGATTCCATAATGGAGGAAAGATGATTATTTTAACTCTATGATGTTTAGTTGCATGTTTGGCAGGTGAGATAAAtattatgtgaaaaaaaatgttctgaatGAACAAAACGaga----aattcattgttttgttgttggctCCCTACAGAGAATGATAAATAAAGAACagcttaaatatttttgtgaaatgaTCACAGGACTCTTGTAGATGgcactaaacaaaaca---ggaaagcattgctttattctaaaaatatattgaaattcc----ATAT----TGGAATCACAGTAT

a score=19664
s chr3           146875770 576 + 160039680 TTTTTAAAATTT------GCAAATGTCTTAATTTCCACCTACTCCCTGGTGACCTCTCAGACCTGACATGGGAAAGAAAACTTAAATCAGAACCTAAAATCCAAATTACTTCCACATTGATGAGGAAGATTTGGTTTCTAGGGTTTCAGCAGTGTGCTTTCTTTATCTTTATCTCTAATGGGGGAAAAACCCCTTTCAGTGGGTTCAGGATGGCTTGCGTGTTCCCCCTTTGCTCTGACTGCCATGTGGCTAGTGCTCCA--CTGATACAGCTTGCGTTGTGACTTCACTCTTAGTTATTTTTC-CATGATGACCTCAGTCTTGGCTTGAGAGTCTGGAATCTGGGATCAGCTTGTTTACATTTTGATTTGCCCTGGAAGTGTGAGCCTCAGAGGTGGTTTAGCAAATACTTCAAGGACTTAAATAAACACAGAGTGCTGGGACTCAGGATCATAATCCTTGCATACTACTTAGGAACCAGTCTTCTGGAAGAAGCCAAATTTGTTCACTATTG-AAACAGGTCTTTATTGATACAGTTGATGAAAATTCATCCTGGCATATGATTCATGGTTATTTCGTA--TGATT
s HiC_scaffold_1 133567310 569 + 233722169 tttttagaATTTCTACTTGGACCTGTTGTATTACTAACCTTGGACCAGGTTGTATTACTAACCTGATTTGCCAAACTAAG----AATCAGAATCTCAAA-AAAGACTATTTCCACACTAATTAGGAGAA---GATTTCTAGGATTTTGTCTGTGTCCTTTTATTCTGTTCATGTCtgaaagg----aaaatcttttaaGTGAATTCAGTATGTACCGTGTGTTCCTAATTTTCTCTCACTTGGGTGTGAACAGCACCTCATACAAATATAACTTG-----TAACTTCACTGTTGGCTATTTTTAACATGATGATgtcagtcttggcttgaattCCTGGAGTCCAGGATCAGTTAGTTTACATTTTGATTTACTCTGAAAGTGTTAACCTCAGAGGTGGTATAGCAAATATTCCAAGTgctgaaatatatataaaatactgtgATTCACAGTCATAA-CCCTGTGTACCACTTAGCAGCCAGT-TTCTTGAAGTCACCACATTTACTAATTATTATAAGAAGTTTTTTATTGATGCTCTCCGTGAAAATTCATGTTGGCATACAATTCATAATTGATTCATAATTGATT

a score=21316
s chr3           146891889 1071 + 160039680 TGAGAAACCATTGGCTTAAAGTATTTCTGAGGTAAACAAAACACGCCTCC-ATTTTTTGGAGACTAG------------------ACAATAGTGCCTTAGTGGCA---------------TGATGTCATAAGCATATTTTCTCAAATTCCTTGCCTAAAATAA-------TTAGTTAGAATTGGGAGGATACAATCAAGTCCTCCTCAAATTTGTTTGTAACTCCCACTAAATCATAAATGGGATGGGGTATAGCCTATATATGACTAGGACCATGTTAAATACTTCAAATTCCTGTGTGACTCCAAGG---AACATTTTTATTCTTCA---TTATAAA---CAAAGTTGTTCATTTTATAACTTAAGTTCAGAAATTAACAAGGCTGTTTCAGGAGCCTGGCATACCCCAGAAAGAATTGTTTTCAAACTCTTTCTGAC-TTGTCACCAACCTCTAATGAGAC--AGTGGGGCATCACTGTGAAGGG-ACCTTTGTTTACTCCAGTGACAAGGTGTTGGTCACGAAATCCCAAACTCA----GTGTCCTCCCTGAAGTCTCAGAGAGCTTCTAAACAGAA-CTGCACTGAACTTCAGGACACTCCGTTCTTCCCT-CCGAGCGGTGACCTAGTCTGTTTTCAGCTTGGATTTGGGAGCAGGGAGATCAGTTTAGAGATGTTGACTGCAAATTCCCTGTTTGGTTTGAGGTATCG-----------TGAATTTCCAGAATACAGCC-TGTCTTCTGAGTACCAAATTAGTCTTGCAAGCTCCTTATATGTC-------CATGTAATGTTGGTGTGGTGTCTAAAAATAGTGGAGCTGGATGGATGAGATCGCTACTTAGGCAAAAATGAATCAAAACTCTTGTTTTATTTATTTAATCTTTTTAAACTT--TAAGCTGTAGTTTC-----TATATCTAGACGTTGTGGGAA-AATGAGCTGAAGTCCAAAGCTTGCTAATGAGGTTACTTTTTTTTTTAAATCCTTAACACACTGCCTACCCATCATGAGTGTCTAATCAATAATACTTTACTAGTTTTTGTAGTGAATCATTCTGGAGCCTGATTTGCATTGAAATGGTATCCGAGAATGAAT-AGGCTGTAAGCATCCTTTAATGAGATCTCACTGTCAATAATGAA
s HiC_scaffold_1 133580562 1090 + 233722169 TGGGAAGCCATTGGCTTAAAAGATTTCAGAAGTAACTGAAAAATGCTTTCTGCTTTGTGAAAGCAAGTAACTATAGCTTTCTTGAATAGTAGTAATGTAATAgctctcacttttttctttttgtgccaggaatcTGTCATCTTAAATTTTTGGTCTAGAATAAATTTGAATCAGT-AGAATTGGAATGTTGTAGTGAAGTTCTC---AAGTGTGTGAAGCACTTTCACCAAAT-GTAAATGGAATTCAATAAAGTTTATATA-----aggagaatat--aat-ttttaaattaccaaGTGAGGGAAGGGgtaagcattcttttttttgaattttatacaaaTCACAGTTGTTTTTCTCACTGTTTG----------TtaacaaattcatttttatagcCTAGTATA-----------ATTGTGTTCAAAGTGTTGTTGACATCATTACCTACTT----TAGGGCTGAGTACTCTGATACTGTAAAGGGGACCTTTGTTTACTCCAGTAACAAGATGTTGAACAAGAACTTGTGAACTCAAATAGTTACCTCCCTGAAGCAACAGAGAGCCTCCAGAAAGAAACCGAACTGAACTTTAGACCACTCCTTTGTTTTGTGCTGAGACATGATCTGGTCCATTTCCA-CTTAGAATTGGGATCCCAGAGATCGGTTTAGAGATGTTCGCTGTGGCTTCACTGTTTGGCTTTAAGTGCTGTGAAACTGCTATGAATTCCCAGACGGTAGCCATGTCTT-TCAGTACA----CAGGGTTGTAAACCCCTTGTGTGGCAGGTCTGTATGGCATATT-ACGTGGTGTCTGAAATTAGTGGAGTTCACTGGATAGAG----TATTTCACCAGAATGGAGTTCAGTTTCTAAACCGGGCTATCTTG-AGTTTTGAACTTACCAATCTTTGGTTTCTTAAATGTACCTAGCC----TGGGAATAATGAACTGAAATTCAAGGTTTGTTAATGAG---ACAAACTGTTTGAAAGGCTTAACACACTGTCTGCCCACTGTTGGTCTGTAATAAAGA----TTTCCTGGCTTTGATACTGGATTATACTGGG---CAATTCTAATACAAATAATACCTGAGAACAAACGAAACTCTAAAT-TCTCTTTGTGAG-TCTGA---TTAATAATGAA

a score=73288
s chr3           146893005 5407 + 160039680 [encoded data, 5905 characters]
s HiC_scaffold_1 133582187 5263 + 233722169 [encoded data, 5905 characters]

a score=30154
s chr3           146900925 1362 + 160039680 TCCTGAACCTTCCACAAGAG-CTAGCTTAGCGCTGACACTTGT---TTAGTCTGCCCT-----TTGTGCCTTTGGT-CTTTGTCTTGTGAGCA-TAGCCTGTGTGAAGGTCCACTGGAGGAAGAGGTGGGGTTACCTCACTGTA-TAGCACCAGGGCCTAGCACGGCGCACACTCAAATAAGTATCCATTGAATTAAAACGTAAGTCAGTGTATAACAGAGCAGAAATTCTTGTCTCCTTATT-----CAGTTGATATTT----GGTTTGGGCTGTTT--CCTAGAGCA-----------TTTTCTTCACAAACAAGTAC-----------AGCAACAAATGAAAGGAAACAAGAAATCCAAGTCGTCATAGTATATCTGTTACAGAAATAAGATTTATTTAGTTTGAATAGAATTTATGTTTC-TCTTGCCTCTGACTCACAGAATGATCAAGTCTCGGCCTATGGATTATACCTTTGTTCCGAGAACGTGGATTTTCCCTTCTGAATATACTCAGTTCCAAAACTATGTGAAAGAATTGAAGAAAAAACGGAAGCAGAAAACTTTTATAGTAAAACCAGCTAATGGTGCAATGGGTCATGGGTAGGTTCATTTTTTTTTTCCTGGGAAATATAAACATTGCAAAATGAGAGAAG-----ATATACGCTTGATTACTTATGCATGAGTAAGTACCATACTGGAAAAGCAATGCGCTTCTAACTATCACGTTCTTATGACTACATCT--------------------------TCTGAAAGACTTTAGTCATCCAGTTAAAACATAGCCAAAACTTGTGAGACTTTAAAGAAATAATCATGAATAGGGGA--------------AAGTTTATTTCCTTATTTATTCATAAACACAATGCATGCTTATAGTAATTTCAGTGCTATTGGATAATAAGGTAAATTGCTGCAGTACAGCTAAATTAGCCTGGAGAATAAAGTAGAAAGAATTGTCTTGTCATAATGAGAATGCTCGAGGTGAAATGTGTATAGCCTT-GCTTTATAAATAAGCATTTTCCTTTGGTAACTATGGCAACCGGA--TGGAGGCTGCACAGGACACATTTTTAAGCTAACACGCCAAAGAGCTAGACAGTTTATTCAGGAATAGAATGCACAACATAACAGTTTTGATTCTCTTTGCTTGTGTTTAGTTTGCTCTAGAGCAC-----TAGAGAAAGTTGGCTCTTTTTTTTTTTAAATCAAAATCCACGTGAGTCATTTGAACttttttttttttaatttaaaatGCTAT----------AGTGCATGAGATCCTTGGAAACGCTAGCtg-----tttgttt-----gtttgtttgtttgtttAGAACACATTTAACTTGTGAGCATGTTGTGCTGATTCAGTCATACGTTATGTCTAAGCTTGGTCACGCACACGCTGAGAAGTGTGTGAACAAGTGAGGATTTTGTACCCATTGCT
s HiC_scaffold_1 133591357 1388 + 233722169 TCCTGAATCCCACACATGAGATTGAGTTAATGATTGTTTCTGCATGTTACCTTGCCTTACCTGCTGTGTATTTGTCACATTGGTTTGTAATTAATGGTCTATTTGTGAATTCCTTGAACATAGGGATCAcactaatttattttaatatcaccAGTGTCCAGCACAGTGTGTAACCAGAT--TTTCACAATATAGTAATATGTGAATTAGTACTTAACAGGGTGGGGatttttgtctgctttttttttcccactgatgTATCCCAAGTGTCCACTATTTAGTCCATAGTAGGTGTTTTAAGTTCTATTAGTAAACAGACATTTGTTGACTGGATTAGTAAATGAACGAATGGAGGGAATTTAAATC--TATGTTATATAACTCatggaaataaaatttgtaaGATTTGAATAGAAACTATTTTTCAGATTGTCTCTACTTTACAGAATGATTAAGTCTCGTCCTCTGGATTACACCTTTGTTCCTCGAACGTGGATCTTTCCTTCTGAATATACTCAGTTTCAGAACTatgtaaaagaattgaagaaaaaacgGAAGCAGAAAACCTTTATAGTAAAACCAGCTAATGGTGCCATGGGCCATGggtaggtttatttttatttggaaagtaaaaaaaaaaattaaaaatggaaggaaaagagtATATGTGCATAATTACTCAAGT-----TGAGTACAGTTATGAAAAA--AATACGTTTCTTACTGTTGCTTTTTTGGTTCTGAATCTTTAATGAGCCTTATTCTTTCAACATGTCTCATAGGCCTCagtaattctatttaaaaat---taaaatt----aaattttaaaaaagcagacttCAATAggagataaaaacataaaagaaagcaattttctaatttcttcataagcat------------ttataattttaatacacttagagaatgaaataaattccTGTAGTAGAGCTAAGTTAACTTTTTGAAAA----GGAAGGGAGTTACTTTTTATAGCTAAAATTCTTCAAGTAAAATATGTATGTTCTTaggtttataa------tttttctttatgtagCCATGGtaattggattttaaaataaagtagagCACA-TAGTAAGATAGAGTGCC-AAGAACCAGAAATGTTAGCTGAGAATAGAACATGCAAC---------TTGATTTTGGTTCCTTATGGTTAGTTTTCTGCattgcacattttaaaagaaagt--gttATGtccctattttaaataaaatatacttgaggtatttaaa--------tttttgatttaaagtcctgtcgaattaaaaaatacttgaaatggTTGCAA---CTAGGTGAAATTACTGTTTAAGAAATTTGC---TTTGTTTCAAGCATAATTAA------------TAATGC--AGTcaatcatatattatttttaaatatggtttGGTA---GCTtagaaataaatg---------tgattttgtacctatttct

a score=42059
s chr3           146903876 3535 + 160039680 TTGTCTCCCTCCCTTTCATTGCTCTTGTGGAGGGCA-GAATTCTGGAATTTTCTGTAACACTGGTCTCTCCCT----GAGTATCTAGATGACATTCCCCCCCGCCCCCCGGCTTCTCAACCTTCATATCAAATTATTTTTTATTTGTTTTCTTTAAACTTAGGATTTCATTGATAAGAAATGGGGATAAAGTCCCTTCTCAGGATCATTTGATAGTTCAAGAATACATTGAGAAACCTTTCCTAATGGAAGGCTACAAGTTTGACTTACGGATTTATATTTTGGTTACATCCTGTGATCCATTAAAGATATTTCTCTACCATGATGGGCTTGTGCGCATGGGCACTGAGAAGTACATCCCACCAAACGAGTCCAACTTGGTAAGTGACGACCGAGAACCTAGCTACTGCTCATTTGTTCAATGCTT-------AACTCATCCGTTGTGCGTAAGGACT-----GTCTGACGT----GGCGTTCCGCGTCCCCA--------GGGCTGAATGAATTGTGTGC--------------CTCTTACTGACAGACAGTGATATG---------AAAAATA------AACTCAATGCA----ACGTGGGAAA-----------------------------------------------------------------------TATAGTGAGGTACAGGGACCCG---------GAGGCTCAGTTCCTCGATGAGGAGCTGACGTTTGACAGAGCTTCGT-GTCAAAG---------------GTATAGTACGAACATG---------GAATCATGGAAG----AGACTATGAAGATAATTCATATTATCTTCAGCATCAGGGTTATTTCATAGCGGCCAAGGGAGGCAGGCTTCTCAATCTGCATTGACCACTCGTGAAGTTAA-----GGGAAACTACTGTGTACATCGAGAGATCTAGTGCACGAACCATTTCATAAGTATTTTCTCAGTAATATTTCCTTT--GTACAGTAACTAATTCTCACGGAAGTTGCAAATATAATTTAC--CAAAAATTA----CCATAAC-TAATTTTACATGCTGAATTGTAAGTTATCATTCATACTTAAAAATGTAGTTAACATCTAATCTTATATTTCCAATGTACTGAGTGTAAGAAAATTCACAATGTTACTGCTTCTTAGCTTTCCAAAGGCCC-TGTATTATTCTCTTCTAACGTTTGCATA--CACTTCTAGGAAGATTGACCA---TTTCAAAATTAAATAGTGACTCACCCTCAATGTTGTTACCATTAGTAAACTAAAAGTTTTGCATACCTGGCAAGGAAGAAATGAGGGAACTATAAGAATATTAGGAAAAGATGGTAGAACGAAGGAATATTTTATTTATGGTCATAAAGTTTGTTTCTGACTTTCAGCAAAGTAATGTTTGAAGTGTACAACATTCCCTAGAATTATGAT-ATTTTGGAGA---------------AACATAAACAGTGTGTGACTTCGTAGCAGCAGCAGTCTATTGGAGAGATCTGAAG----GCAAGCATCAATCAATTCCTGAAGTCGAG---------------------GGAGCTATGACAATGCAT--GGTGGGCCATCTTTCC--------------AGATGGAGTCT-------AATGTCA-----------------------AAAGAAGACTAAGATTGGG-------GGAGGAGGCACCACACAAAACAGAAGTTTAGGG-----AAAAGTCCATAGGAAACAGACAAGGTCAGTC-------TTGCCACAAAGTGTAGACCAGAAAAAGGGTGTCTGTTCACAGATGAGCACAGAGTCCCAGAAAC--AATCTTTCCAGATGTTGTCAAGGACTTTC-TAGGACTTGGGGATTCAGCTCAAGATGATATACCGAATGGATGAATTAAATTTGGGGTTTTGAGAAGCCCATCTGACCTGAAGTGTTAGGA--ATGAGGAGGAAACCGAGTGGAAGGGGGCAACAAAAGAGACTTGGAGTGTGGGAGACCAGACA-TGATTTCAGTCTGGCCCTGTGAGATGAGAGATGATTC---------TGAAATCAGAG---------------------CATAGATTTGAGATAACCTGAAGGCAATGAAGATAGCAATGTTACACTAGAGTGATGAACTGGGTCTGTGGAATGAC------------GGAAAT-GAAAAGAATACCCAAGAGTGTTTGGCCTGGACAGTTGGG-GGATGGGCTGTACT-CTCATGGACTTGGAGTTCAGGAGCTCTTGAAGGCTTTGTAGATAAATAACACATTTGGCCTTCACCTTCAACTG----------GATCTGTCCCGAGAGTATTTGGTTATTCA--------TAGAAAAACTA--------TCTGACCTATGTGCTTCATTTGGGGGCATGTCAGTTTGTAGATTACAATTTAAATAATTGGAATGGGTAAGAATGTGTCATATACGTGTAAGGTGATGATGTCTCCTGAGGATGTGAGACAGGACAAGGC----------TTGGAGGGTGCAGCGTTCCATTCTGAAATATTAAGCGGTACACACAAAG------TAAATTCACTGGGTCAGAGGATTGTAATGAGA-CTGGGGAGAAGAGAGGTAAACCTCCATGCCTTATCTTGATAGCTGCTTTTGAG-CATTTAAGTTCATGGCTTTGGTTCCTGACATATGTAGAAAAAGGTAAGTCTACTTACATGCCAGTATCTACCACTTATCTCTGTGATTCCATTACCAAATCCACAGGGGGTTGTGTGAAAA--CGAAACTTAAAATATTACA------GAAAATTGATCATA-AATTACGtaaaatattatttctaatttttaaa-------ataGCGAATGTACGCATTTTCATTAGATATCGTATTTCCCTAGGAAATTGTATTGTACACTTAATTAGAGTTA--TCAATGAATTTATGAGCATCATTGCATGTGATTTGGTCCATGAC----------AGAGATCATGAGAGAGA-------TTTGAAATGTTGAGATACAGCGTTTGTTCTTGTTTTGTTTTTGttttgcttttttg-agagagcatctcacgcagccctagctggccagggatgagacagcatctcacgcagccctagctggcctcgactcactctagccagggatgagcctgggctctgaatttcttgtctccatcttctaaatgctagaatcacagacacatgtcaacatacccACCTTCTATAGTGACTGGTCCTTCCTTGGTCTCCCATGTACCAAGCCACGTGAGCCTTTGTGATAACATGCAGTGTTGGGAATG---GCTACACAA--TTTAACGCCTGCAGGCCTTTCTGAGG-TCGCTCCTACACTTTCTTCTGTGGTTGTTCCTTAAATATCGCATGATGATTTTAAAAAAGACTTTCAGTAGCAA--ATGGCACACAAATTAATAAACAA-GTAGCTGGAGTGACTGTCTCTGCTTATTTGCCTTAAAGATTTTATTTAacatac----agacctataatatacataatat------ttaatatacacatta-taagatatatacatatataatatacatacaatatatatctataatatGCCTATTATTCAGTGTGATGCAAAATTTCTATTCACAACAATCTTTGGAAGTAGGGTTAGGAAAAAGGTGGGAATTTAAGTTAGA-TTTTATTAATGTTTATGCTAACTTGAT-GGGAAACATTAGATATTTA----CTGTTAAGA--GAAGTTTTAGGTTTTGAATTCTTTTCCAG-----TTTAAAGTAAACAGTGCCAACAAAC---AGGA----------------GGTGTGGTGCTACCTCCTGT--------------GTctgacgc---aagattatcatgagtttca-tccaatatgggctacacagtgagttccaggttatccag----------tgagatcatattccaaaacaaacaaacaaacacacacacacacacacacacacac
s HiC_scaffold_1 133593750 3654 + 233722169 tttttttccctctgttcatCACTTTTGTGGAGGGTGTGACAATTGGAGTTCCTCACTGCACTATTTTCCTCTTTAGTGAGTATATAGGTAACTTTTT------------GAAAACCTTGCCTCCAGATTGAATTATTCTGG---TTTTTTCTTTACACTTAGGATTTCTTTGATAAGAAATGGTGATAAACTTCCATCTCAGGATCATTTGATTGTTCAAGAATATATTGAAAAACCTTTCCTAATGGAAGGTTACAAGTTTGACTTGCGAATTTATATTCTGGTAACATCATGTGACccactaaaaatatttctttaccaTGATGGACTCGTGCGGATGGGAACAGAGAAGTACATTCCACCTAATGAGTCAAATTTGGTAAGTGGTACTAGAAAg---agtttc-attcatttgttcagtgTATTCTCTAAAAAGCATCTATGAGATTTAAAAtcttatgaatttaaaattttatgagttCCTCCTCTCAAATTCTTATGGTCTAGAAGAATTGTATGCATAAAGAAGACTGTTTCTAACTTACAGGAAACTTTCTGAAACTAAGCAAAAATAGTATCTAAATCTAGGCAGGCTAATTAGGAAAAGATACTTGCAGAAAGATGTGTGCTAGATTTCCCAGCACACATCTATACCATGGCTGtatacagaaaggactatagggAAATACATGTAACCATCCAGCGATAATGTTGTGCTCCTCAAAGAAGGTCTGGCTTTCCAGTGGGCTTTGTAGCCAACGAATGAAGGTGAACATGTACAGTATAAACATGTTGCTTATAAAATCAGAAAAGTGCAAAATTTACCAAGCAGTTCTTAAT-------------------TTTTATagcacaaaagagaaataagactgCAAAATTTCACTGACCAAATGTGAAGTTGACATGTTAGTAGTTTCCATGTgcattgaaaaa-atattaaatggagcATTTTA-AGGCATTTTTCTagtaagtttttctttccttgcaattGCACAT--TTATAAAAGTCATACCTATAATTTATTGTAAAAATCATAATCTGTAACTTACTTTTATA---TCAGTTGTGATTTAtgatttatactttaaaatttagttAACTTCTAACGCT------------------------------------------------------------AGGCCTGTTTGTTGTTCTCTACTATTATGTACACAATTATTTGCTTTGAGGTTGGTcgtattttcaaaattaaatggtGTCT---------GGTTGCTGTGTCCAATAGAATGAAAATGCTGTAAATCTGGCAAAGAAAACATGAAGGAACTGTCAGAGCTTTAGAAGGAAAGAGTGTTA-ACAGAAACATTTCATTAAAGGTTGGAAGGTGTGGATATAGCCAATCACCAAGTAATGTTTGAGCTCTACTACATTCTA-GGCATTATGCTGGTTTTGGAAAAAAGCAGTGGCCATGAACAGATACAGTGCTTGACCTTACAGAAGCAACAGTCTAGTGGGGAGGCAGAAAGTAAAATAAGCATTTAT-AATTCCTGATGGTAAGTGTGATGGTCTAAGAAACAGAGGTGCTATGGCAGTGCATTAGCAGGGGCACCTAACTCAGCTAAAGGATAGAAAGGGAGCTTGCCTATAAATTTCAGTCTGAATAATGATCAGCTAGCCAGATGTGGGCAGGGTAGGGTGCAACTGGATGAAGCTCCAGGCAAGAGAGTGGATTAAAGTTAAAAAGAGACCGCAATATGTGGAAAAGGCCACTTACTCTCATTGGC-TAATGTACAGACTC-AGAAGGAATGTATGTTTAGAGGTGAGGATAGAGTCCTAGAAACCAGATCTTTCAAAATTTTGT--AGGCCATGCTTAGCATTTTGGAATTTAAATTAAGATGAAGctctgaaagaaggaaagacatttttgtttgcaaaatggTCACTTGGTCTTAAGTGTGGAGAATATGAGAAGGCAATTGAAATGGATAGGCAGAC----------TAGggtaaaagagacaaaaaactgACCACA---------TATGAGAGGAGAGGTGACTCAGATCAAGATAATACCAGTGGGGCTGGATGTACAGGACAGACACATATTTCAGCTATATCTAAG--AATGTAGGTGACATTGATATAATA---TGACAGGTTGGGTTtgtggaaagaaaacaagagagagggAAATCGAAGACAAAACTCA--AATGTTTGGCCCAAGCAGTGGGGTTGCTGGGTATTACTGTTTGTGAGCAGGGAATACaggtgattttgatgggtttgtGGGAAGCTGATATGTTCAGCTTAAATGCTTGTCTGACTCCCAGAAGAACTATTCTGTAGGCATTTGGATGTACAGCATGGGCTTGAAGTTCTAAAGAGAGGTCTGAGTGATAAGTGTAATTTGAGGAT-TATCA-TTCACAGATGATGATTAAAATAATTGGAGT-TTTAAAATTGGAT--TATATGTGTAAGGAAGTGA--TCTTTTGATACTGTTGGAGAGAGTAAGACATAAGGTTTTTTTGGTGATAAAATGCTTTATCCTTGTGTActaaattgtttttatataattttcttaaatatactGCATTAGGAAATCATAATGAGAGACAGGGAGAAGAGAAATGGGGCTTTTTGCC----------AAATGCTCTTGAATCAAATAAGCTTCTGGCTTTGGTTTTT-ACatgcatagaaaaaa--------------atacctaaattttacATCTATCTCTGTGCTCTTGTGGTTGAGTTCCTAAGTtgatatatgaaaaattaaaaagtaaaatacagcattttatgtAAGCTGAGACTACAGTTACATAAAAGGTAAGAAAGGAGACTTGAAAAAAGCCACAACAAAGCCAAATGCTTTCACTGG---TGGATTTTGAGCAGCAGATactacttgttttttctttccagttaagACAATAAACATA-------CGTTGTATAGTAAGTGGTGCATTTCTATGAGAATTAGAGATTCTTAAACAGATAATAAGTTTCAAATGTTGAAATGTAAtaaatgttc----tttgtttttgttttgctgtcatGTAGTGATTGTCTAAT---------------------------------------------------CCTTGAC-------------------------------AATTTGT-----------------------------------ATATCTACTGACCCATATTATGT-----------------------------------------TGAGCCTGTATGCAGACAGGCAGGG--AAGATTGTAAGTTAtgttatctttattcctttcaggTTGTTATGTGGTTCATAGCTTCCTTCACTTCTATAATTTCTCCTTAAATATCA---------TTTAGCAAATAAATTCATCCTTAATTATGGCACATGCGCTTTTCAACAACATATAATAAGTGATCATTTCTGCctattct-----aatatttcattactcAGATCAAAGGAACTGTAGCAAACATACAGTGAAACATGAATGTAGTTGTTATTGAGATATGAAAATA-ATCAGATGGGTGAAACGTG------------------TATTCATTCTCATGTAGTATTTATATTCAGTGTAATC--TGGGAGAAGGATCACAAGGAAGGTAGCAATTAAAGGTaaagtttgagaaatatttatgCTGGCTTGATAAGGAACCATTAGGTGTGTAATACCTGacaacatgaaaaatttaaattttgtattattttcaagttttatttaagaaaaatcataTCAACAAATTTAAGGATAAAGAGACTAGAGCTGGTGGTGtgttacctgtaatcccaggacatgggaggctgaggcaggaagatgactgtGAGTTACAGGCCAGcatagactacacagtgagctgaAGGGTAGTCTGAACTGTGTaccaaaactctgtctcaaaaaaaccagaaaaaaata-acaaaagaatacaGACAGAC

a score=4352
s chr3           146904103 125 + 160039680 AAACCTTTCCTAATGGAAGGCTACAAGTTTGACTTACGGATTTATATTTTGGTTACATCCTGTGATCCATTAAAGATATTTCTCTACCATGATGGGCTTGTGCGCATGGGCACTGAGAAGTACAT
s HiC_scaffold_1    285968 125 + 233722169 AAACCCTACCTCATCAGTGGCAGCAAGTTTGATCTGCGGATCTATGTTTACGTCACTTCCTATGATCCTCTTCGGATTTACCTCTTTTCAGATGGACTTGTCCGCTTTGCCAGTTGCAAGTATGT

a score=4218
s chr3           146908024 112 + 160039680 taatGGGCTTCATTATGACATTTTCACATATGCATATGACAGGTTTTGATCATATTTCCCCCAGTGCTCTTTCTTGCGCTCCTCA-CACCCTCTTTC----------ACACCCTCTCTCTTCC
s HiC_scaffold_1  16538093 118 + 233722169 TACTGGGTTTCATTGTGGCACTTTCATATAGACACATAACAAATTTTGATCATATTTATCCCCATTATCTTTC-----CCCCTCGCCAATTTCTTTCCTCTTATCAAAcagtcttccttttcc

a score=16446
s chr3           146909390 384 + 160039680 TATCACTGAGGTTAAGAACTTTTAAGTTTTATCAAGTCATTGAGGTTCTCTTTCTGGTGACACCACATGGTTGTGTC-TCTCTTAAGTGGTAACA--CTTTGTTCTTCCTCCTTACAGACCCAGTTATACATGCATCTGACCAACTACTCAGTGAACAAACACAATGAACGGTTTGAGCGCAATGAAACTGAAGACAAAGGCAGCAAGCGGTCAATCAAGTGGTTTACGGAATTCCTACAGGCCAATCAACATGATGTCACTAAGTTCTGGAGTGATATTTCAGTAAGATTATTGTATTCTGTAACTGCAAATGTATTTCACTAAAATTAAATTTAGATACCCAACAAACTTTTAAAAAAGAGTATATAGTGCCTGAGGTTGAACAG
s HiC_scaffold_1 133597907 376 + 233722169 TATCATTTCAACTTTAAACTTGTTAGTCTT---------TGGATGCCTTCTTTTCTGTGA-ACCAGAGAGCTGTGGAATCTCATAGGCGGTAACGGCCTTGGTTCTTGCTCGTTACAGACCCAGTTATACATGCATCTGACCAACTACTCTGTGAACAAGCATAATGAGCGTTTTGAGCGAGATGAAACTGAAGACAAAGGCAGCAAACGTTCCATTAAATGGTTCACTGAATTTTTACAAGAAAACCACCATGATGTCGCCAAGTTTTGGAGTGATATTTCAGTAAGGTTATCTCATTCCATGATTGTAACTGTCTTTTCTTAATGTCAGTGTAAAATG-CCATCAAGTATTCTGAATAAAGAACACAATCCATTGGCTTGGGCAG

a score=33740
s chr3           146912651 2493 + 160039680 TATTTGGGGAATGCTGCACCCTCCCTCAAATTTTTCTTCCTTGTAATTCTTCTCCATTT---GTACAGAACTAGC------TTATGCTCCCTT------------------------------------TTCTTCTTCTTTGTTTATAAATGCTTTTGAGCATCTCCAATGCCAGGTCCTATTATAGACACT-GGGATGG-----TTA--AAAAAAAAAAGAAGTACAAGTGTCTTGTTCAAACAGATAGAAAAGCATCCATTGGTTGCATGCCCTAGGTAGTTAGTAGGATGCATTTCAAGCATGCCTGTGCTTCAAAGATGGTTGTGGAA--GTCCTGTCTGGGATGGCATGGGAA---------------TCTAAGGGAAG--ATGCTCCAGGAAGATGGAACAG------CACAGAGCCTCAGTGGGAAGAAGTGCCACCAACTAGAGAGACTCAGAGAGTGTGGCAGAGAGATAGGTG---GGCAAAGAGCAGAGCTGGGGTTGGGGAATGAGGGCAGAGCAGGATTGGGGGGGGGGGCGGTGCCAAAGAGCGCCATGAAGCCACCAAGGATGCTAGTTTTC---CCTAGGTCATTTTTAA--------AAATGAAACTATGTCCAAAAAAAGCATGCCGATGCCTTTTATCACAATCTCAACAGGAGTTGGTGGTAAAGACTCTGATTGTGGCAGAACCTCACGTCCTGCACGCCTACCGGATGTGCAGACCCGGTCAGCCCCCCGGGAGCGAAAGTGTCTGCTTCGAAGTCCTGGGGTTCGACATCTTGTTGGATAGAAAGCTCAAGCCATGGCTTCTGGAGGTAAGGGGTTCTCTAAGAAATGTCAAAATAAATCAAGCCGTCACAGTCCTTATATGTGTTTAAAACCCATCTG--TCATATGTGTACTTGGCACAGGTGTCCCCAGCTTGCTGGCTGGAATGAGGCCTGAATGGAGTATGTGGAAGGGAGTGAATGAAAATTCCAGGGCCAGAACATTCCCAAGGCTGA------------------------TAGGATTTTCTATCGAATCTCCACTTTACCGT-----------AGAGTGGGCTTGTTGACGCTGAGTTA--------------------------------TTGGCTGCTTGGACAG---TGGATCTTGTATCTCCTCTGGGTGGGCA-CTGCCTCTGGCCCCCATCTTTACTGTGTCTTTAAGTACTCCATGGAGA--GAGAGGGTTCTGTTGATTCACTCTTCAGTACCCAGTACTTAACACTGCAGGGGACATACATCCT-------------------CCCTCACAGCCATCTGATATTTCTGAAAACCGAGTGT--CTTTGGGTTTGCTGCCTGTACCCTCTTGTCa------ttattaatttt-----attataaaatGT----------CACTTAACATATGGAACCATGTACAGAATATACAAACAATCTCTGTTTATGTCCTGCCCAGTCACGTTTATATCTATCTGTGTTACTCCCGAGGCACCTTA-GGATCTTTCTTTGTCCAGTTGACCCCCATCCAGATGTTCTCTCTGGGACCCCCAATCTGGCTTCACAGAAGGAGCCTG---CCTTCTTGGGGCTACTCCATACTGTTTGTAGCCATCTGTCAGGGAAGCAGCACATATTTGAACTGTGTTTCCAGAAGGAGTTATATTTTAAGGAACCTACTGCCACAGAAGCTAGAATCAACCATGGCCTTTCCTTCCAGAGGTTTGTCCCCCTCTTAGGGTAGCTGTTT--GACGTAAGAAATTGCATCATAGTCTCCAGGTTTTTGTAAGCAACCTGAATGAGTGCTATGTGAGATTGTGATTCAAACCGTATTTTGAAGGAAAGTACACATTTTGAATTGGAGTGAGGGAGAGACAGAGAG-----AAGTATATTCATATATTCTGGGCAAATAGCCTGTGTTGTATGTTCAAGGACATTCAT--TTTTCTGCTAGCTGG--AATTTTAGTCCAGCTTGGACCCTAATAATGAGACCTGTCTGAGTCATTTCGGCT---CCTCTGTATCTGCCATTCCTGAATGGAAGAGTCCTTGACTGT--GTCTTAGGAAGGGCTGGATTTTTGTTCCCAAGATTGAACACGTTG-ACCCTGGGACTCATTC--------CCTGACTATTGCCGACTTTTCCTCTGCGCCTGTCCTGGTCATTT-----ATCCTTGATGGCTAGAAGA---ACGAAGGCACTCTTATGCTTCACAAAGGAGGAAATGAAAGGATTTCTG-GAATAAGAACTTTATAAAATGTGACATAACCTTGGTAAAAAGCC--TTTGCCCATAGGAGCTTTGAGTTA----GCTAGGTTACAGCTTACTGAACAGCTGGACTCTACAGACTTTTTAAA-CCTCCTCATAAACATA--TTTTTACTCCTTATCCTTCATTGTTTATACCTTACTCAGCTCAGAATAGTTAATAAC---AAAAACCCCGTAGCATTGCTGTCTGTGAGT-------ATAGCGCACGTTTAGATTCTTAAGTGTGCAGTTTGAGAGCTTG------CTGCCAATTGACAACGCTGTGGGTCTCACCC---GCAGCGTTCAAGACCTTCTGGCGCCACCGTGTGGAGTAAAGTGGAGGGCGTGTCTGAGGAGGAGAAC---TTCTAGCTGCGTAGAAT--------CTGGGCAATGATCGGC---AAACTTAAGACATTTCCAAGCACTGAGAACA-----TTTTCAGGATGGAAAATTGT
s HiC_scaffold_1 133602500 2534 + 233722169 TGTTTGCAGAATAATGTACTCTCCTCAGAAGTTCTCTCGCCTGTCATCCCTGTCCTTTTTTTGTACaggatgagcacacagttctactCTTATACATTTAGTAGGTAGAAAGAGTTATAAGTTGTTaacctttacttatttattcacaGATATTTTTAAGCGTCT---AAGTGAAGCACTGTCACAGGCTCTAGGGATGGGGCTGTTATTAAATACAACAGAA----AAGAACTGTGctctgataaaaagaaaaa-----actggttACATACT-----------GTGTGATGCTGTACAGA-------ATGGTTGGTAGTTAATTTTCAAATGGGCTCAGTGGAGATGTCACGAAAAATCTCAGGGCCCAGATGTAGGGGAAGGGATGTTCCAGGAGAAAAGAATAGTGAGTGCAAAGGACCTCAG----AGAAAGTGTCACTGAGCTGAAAGATCCAAAGAA----------AACCAGGtgtgaggggaggggaagagatgaAAT---AAACTCACAGCAAGGCAGGGCTAGAGGG-----------CAGAGAGCCCCA--ACTCCAGCCAGAAGGCGAGTTAGGAGGCTCAGGTCATGCTTGTtcaaatgtaaatgaaataaag---aaataaggcGTTTC-ACCTCCTTTGTCACAACCTTTGTAGGAACTGGTGGTAAAGACTCTCATTGTAGCAGAACCTCATGTCCTACATGCCTATCGAATGTGCAGACCTGGTCAACCCCCAGGAAGTGAAAGTGTTTGTTTCGAAGTTTTGGGATTTGACATTTTGTTGGATAGAAAACTAAAGCCATGGCTTCTGGAGGTAAGgtgttctttaa--------aaagaaagcgAGGTTATCACGGTTCTTA----TGTTTGAAACAAATGTGCTTTAAACCTGTATGTGGAATAGTCATTCTCC-TTAGCTGATTTGGACGAGGCCCGAATGGAGTCTGTGGGAAGAAGAGAATGGAAATG-AAGGGCTAGAGCATCTC--GGAATGAAGCAATATATGTTTTGATACTGCTTAGCATACTTAAGTGAGTTTTAGATGTACGATTTTTGAATATAAGGGTGAATGTGCTGTTACTGAGCTAACCTCTCACTCTGTTTTCTCAACCTTATGGAGTCTTCTACCTGAGGAGCTCTAgacttctcctcttctcagcgTGGGTGCCTGCTTTTAGCGTC--------CTGTG-CTTCCAGTA------GGAAGCTGAGCCGTTCCACTTAGTTCACTGTTCATCATTCAGAACTCAGCCCCGCAGCTGACACACCTTCTCCTTACAtgcctgggcttccccttccgcCCAGCTGGT--------CAGCTGTGTATACCTTTGGGTTTGCTGTCCAG---CACTAGTAAGAtcagttattatttttctgtaattataaaACGTTACccagtaacatttaaaaaatgaaaaagtgtg-aGAATATAAAGACAATTTCtgttgaagatttttgtgttCCCTGCTAGTATTATTTA-ATTACCCATGAGGGACTTTATGGGTCAT--GTTGTCCAG-CGCGCCCCAT-CAGCAGTTCCCTCTAGGTTCTCTGATCTT-----------GGATCCTGCTTCTTTCTTGGGGTTACT--AAGATGTT--TAGGCAACCATCAGGAAAGTAGCACATACTTAA----TGTTTACTGAA----TTATATTTTAAGGACAGTATTACAATGGAAGATGTAATCCA-CACTATCTTCCATTTTGca--ttgattttctcttttatgtaaGTGTTTAAAAAGTCGAAAGTTACAACAT----------------TAAG------GAATAAATGCTTTCTCA--------------------TTTAATGGAAAGGGA-----TTGAGAGAGGGTGAGGGAGTGGAAAAGGGGGAGAGAGTGTGTTCATTTACTGTGAGCAAATGATGTGTATTATAT-TTCTAATCTAATAATGGTTCTCTGCTGGCTGTTCACATTTCTCCCGGCCTTGGTCCTGA------------CCTGAGTACTTT--GTTAAACCTTTGCTTCTTCCATT--------------GCCTGGACCATTCATCTTCCTAAGGtctgagattttcttctttaGGTTTAGTACTTTGTATACAGAAACGCTTTCTTGTTTTGCTTAACTAT-----GCTTTT--TTTGCATCTG--CTACCtattttttgaattcttgatGAGTGGAGACGTTGTGAAGGTATTTata--------gaaggaaaaactgaaagaattaaagagaaTAATGACTATAAGTATTTTTTGTTAGCTTTTAAAGAAAGACGTTTTCCTCACTGGagtttttcattaatttactAAACCACAGTTGACTGA--------ATTccgtatatttttaaaaggcttagAATAACCatgcttcttcattttttatcCCCCGT---------CTTCATTATTTCCCGATAAATCAGAGCGTTAAAAACTCTACATCATCAAAAACTGTGTATAATGGccataaagcattttaaaatagttaa-----ccTTTGTAGATCTTTGCTCGCCTCTCTGCTGAAATTGTAGTGGTTCTGATACAGTATACTGTTAAAAGCCTTTGGGCGCCACCAAGTGGAATAAAGCAGAAGGTACTTCTGAGAAAGTAACCAAGTTTTAGCTGACTAGAGTAATTTCAGCTGTTGATTGCTAGATGCAAAACTGAAGAGAGTTTCAATCATAGAAAGCCATTTTTTTTAAGAGTGGAAAACTGT

a score=8411
s chr3           146915599 205 + 160039680 GACTGGAAATCCCACATACATTTATGAAACACAACTG-GATTAGGTGTTGATCTCC-AACGTTCAACCGAGCTTATTGTTTTCTCTGTAATTTTCAGATTAATCGAGCCCCAAGCTTTGGAACTGATCAGAAAATCGATTATGATGTTAAAAGGGGGGTTCTGCTAAACGCGCTGAAGCTGCTGAACATCAGGTGAGACATCTTCCC
s HiC_scaffold_1 133606819 203 + 233722169 GACTGGAGAGCACAT-TAGATTAA--AAACAATGCCGTGAACAGTTATTGACCTTCTAACACTTGCCTACTCTCATTGTCT-CTTTGTAAATTTCAGATCAATCGAGCCCCTAGCTTTGGCACTGATCAGAAAATAGACTATGATGTAAAACGGGGAGTACTGTTGAATGCACTGAAACTCTTAAACATCAGGTAAAGTATGTCCTC

a score=38550
s chr3           146930030 1595 + 160039680 ATGGTCTTGTGTTTTACATTTCAGGACCAGCGATAAAAGGAAAAACTTGGCCAAGCAAAAAGCGGAGGCTCAGAGGAGGCTGTACGGTCAAAACCCAGTAAGAAGGCTTTCGCCAGGCTCCTCCGACTGGGAACAGCAGAGGCACCAGCTGGAGAGGCGGAAAGAAGAGTTGGTATGGGCGCTGGGCTTGGTATCTTGGCTTATTTTT------ATTCTGACTTGTGCTGTGGTGCATAGGGAACCCATGCTAGGCAAGTGTTCTGTCACCGAGCCAC-CCCCCAGCCTGGTGTGAACCTTTTAACAGCA-ACTTACAGTTTCAACTGCATGACCTA------GCATAATTTTTATAAAAATCTGATCATTTTTTAGAAAGAGAGACTCCTTCAAGTACGAAAGCAGGTTTCGCAGGAAGAACATGAAAACCGACATATGGGGAATTACAGGTAGACGCCCGCTGCgtggttcttgttgtggttgtggttgttgttgttttgtttttCTG-AGACCGAAGAGGTGGTGTTTCTTCATTCTA----GCCCTTTTCAGCGTATTTTAATTGCTGTGCTTTCTTCGTTAGAAACAGCTTCTCGCTCACTATGTTTCAGGACATGTACGGGTGTCTGCAGGTAGATGGCT----CTTGG---CTCCTGCTGACTGGGCCAGTTTCTGCTCTGCCTAGGGAGG---TTTTTAACCA-ACG-TTTTCTGTGACTGTCCTTGGTCACTATGTAGTATTTTAAGAAAAGCAAGAGTCATGTCTTCTAGTATTCTTTCTGGCAGTTTCTGCTGGCTGCTGTATTTC----------------CTTAACAACGAGGCAAAAGAAGAACGTATTTGAAGGGTCTGGGTG--GAGATGGGAGAGA-GGGTGTG--------------GGTAATCTTCACAAAATACCCCTGGAAAGGA--AAAAAAGGGACCCGT-------TAATATTCTTGGAAAGATGGTCCCTCCTCCAGGC-CTGACATTGCCACATGAGGGTTTAG-----CAGAGGGTTGGGGAGGGGTTCAGGTTTTCTCACCCTTTCTGGTAGCATCCCCTTCTTCCTGGCATCGACACCCCCAGAGCAGCAAGGAGAGGTGAAGGCGCTCTTCCCATT--CTGCTTCCACCCTCTTTTCATTTCCTCACCCC---ATGAGTACTTGCATGAGTATATGGACCCTCACAATGTATGTAGTACATACATTGATACATACGTACCTTCTGCATTATCCCGGGTCCCCAGAACACTTTCTCTCAAAGTCCAGTATTTCACCAACTTGTCCAAACACCATTCT----------------TCAA--------------------------------ACCCTTCAGTGGAACTTGTCTACA---TAAGTGGTA----TACCAGATGGATACTTGGGACTCCCCCCTTACTCATCCATGTCTGTTTCTAGCACCTACTTGG------CCCAGAGGGAGGGGGGCAGCGGTTCTCTAAACTGGTGATC-------TTAGCTCCTGGATTGCGTCAGATTCTTGTAAGCACATGGGTTTCTCTGATCTCTCTTTTTCGTAGGAGAATTTATCCTCCTGAAGACAAAGCACTGCTTGAGAAGTATGAAGGTTTGCTGGCCGTCGCCTTCCAGACCTTCCTCTCGGGAAGAGCAGCTTCATTCCAGCGAGAAATGAACAATCCTCTGAAAAAGATGCGGGTGAGAGGATGA
s HiC_scaffold_1 133615312 1636 + 233722169 ATAACCTTGCATTTCATATTTTAGGACCAGTGATAAGAGGAGAAACTTGGCCAAGCAAAAAGCGGAAGCTCAAAGGAGGCTTTATGGTCAAAATTCAATAAAAAGGCTCTTACCAGGTTCCTCAGACTGGGAACAACAGAGACACCAgttggagaggaggaaggaagagttGGTATGAgcatttgattttgt---ttgttttgtggctcTAGGAATTCAAAGTgggggctttgtg-----------catgctaggaaagcactttttcattgagctatatcctcttATTAGTGTGAGCGTTTTAACAGAGTATCTAAAATTTGTATAG-ATGACTCATTTATTGGGTTTTGTTTGT-AAAATTTCCTCG-TTTCTAGAAAGAGAGACTCGCTCAAGTACGAAAGCAGATTTCACGAGAGGAACATGAAAATCGACATATGGGGAATTACAGGTA-------ACTATGCTGCCC-----------------------------TTTTTCTGTAGGTTGAGGGAGTGAAGGTCAGTCAGATCACCATGCTTTTTTAGCCTTTTTTTAAGAATTGTGCTTGTTCTG--AGAA-----TGTTCGCTTTGTGTTTTTCAAGATAGAAAAGGTCAT----AGGTAAATGGTTTTGACTTGAGCCCTCCTGCT-----AGCCAGCCT-TGCGGTGACTGTTGAAAGTCTTTATAACCAGATGCTCTTCTGTGATTATATTTGATCAGTACATGgtattttaagaaagtaaaatttaggGTCTTTTGGTATTGTTTTTGCCAATTTTTAATAGTTGCTGTGCTTTGCATTTGTCCAAAATGCTTAGGAACCtggcaaaataagaaaatatttgaaggagCCAGGTGTAGAGACATTAGACAGGGGTGTGAACTGTATTGACCTGGAACTCTAGACATTATCACTCTTGACAGGATCAAAGGAGGATGTTGTAAGTTCCTTGTGTTCTAGGAAACATTGTCTTCCTCCCAAGCTTTGACTTTCCCTCAGCAAGACTGAGGGAACCATGAGGT---GGGTGGGCATAGAGTTCCTTGTC----CTGGCAAGATGTTCT--TTTCTGGTCTTAACACCTCCATAGTAGT-------------GGTGTTTCCCTCTTTCCCTACCTCTACCCCTTTCTCATTGTGTCACCCCAAAATAGATGTGCACAGTACTATATTGTTGTGTAC------TTCAGTAACTACAGTGAATCA----TAACTTCTGCATTGTCCCCTATTAACTAAGCTCTCTCCAGGAGAATCT-TTACTATACCAATTTGTCCAGTTGTCGTTTTTTCCCACCTCTTTCTGTCAACTAAATTCTTATAATGTACCTTCTGGAACTGCATTCTTTAATGGTACCTCTCTAGACTTTAGTTTGTATAGGTAACAtatgaaaatttttgaattttgca-tagttgtttatctttatttctaGATCCTAGTAAAAGAATTAtcacagagaaaggagaaatggTTATTGAAGCCACTGCCCTATCAAATGAGCTGT--AAtcgcttctttttctttttaacaaattggtctgtctgat-----tttattatagacGGATTTATCCTCCTGAAGATAAAACACTACTTGAAAAGTATGAAAACTTGCTGGCTGTTGCCTTTCAGACCTTTCTTTCAGGCAGAGCAGCTTCATTCCAGAGAGAGCTGAACAATCCTTTGAAAAGGATGAAGGTGAGAAAATGA

a score=16082
s chr3           146933668 1308 + 160039680 AGAGGCTTTTTGGCATTTTTATAGCTGTCTTTCCTAGTTGGAATGCAT-------TTCTACTGTGAGCTGTGGTGTGACTCCTGGTTTCTTCTGTAAACTTT--AAGGAGGTTTTGAAGTAGAAATCATAA-TATGTGAGCTTAGT-TTTGTCAGTGATGATGTCTGGATCACACGGCAAGGTGGCTGATCATACCCCT--CAATACAGCTGTG---CAGGTTTGCTCAACTTCTGATATTGGTGGATGCCCTTAA-AGTTTTCCCTGTGATTTCAAAGTAAATTCAGAGGCTCATAAGATAAAGCTACTGGGATACTTAGAGATTTCCTCTACCGGTAATAGGCATTGAATTAAAATATTTCATAAGGCTGTAAAAATATTCTTGCAATAATTAGTACTTCTAAACAGCTTCATTAAGTGGTGTCCATTACACAAATTTCTAACATTAAATTCTTTCTAAATGAAACTCCT---------------------------------------------------GGCC-----------------------------------------------------------------------------------------------------------------------AGTTTTCATTTTCTGTG-----TCCT---------GTTTTAATCTTAAATTGTGCTAATCAGTACAGGAATGACTAATGGGATGA-AGTCTGGAAGACAGGCGTGAGCTTTTCATGTCTTAGTGTCTAGGGAGATGATTTATTAAGGTTGGCAAGCCTGAGATTTCAGTGATATGTTGGGAAGAACATGCTCGCCTATGATGATTGCACACATACTTCAGCTGTGTGTTATGTTTACTCCCAGATTTTGGTAAA-GTTTCCTGAAGCC--TTTGCCTTTAATGTTTCTTTCTTTCGTCTGAGTAATCAACACTGCATAGGCTCTAGAATAACCGCCGTACACCAGCTTGTAGAGATTAGTGACCTCGTAAAAAGTCTCTATACTTTCAGTGACCACCATTTTC--ATCACGTTTCTGA-AGGAGGAAGATCTCCTGGATCTTCTGGAGCAGTGCGAAATCGATGATGAAAAGCTGATGGGGAAAACCGGCCGGGTCCGAGGACCGAAGGTGAGA---------------TGGCGCCCAAGTCCATGTCA-TGGGCGCAAGTGA-TCTCAGCTAGGCATTTCCCTTCACAG---TTAG-GATGCGTTTTCATAGGAACTTCAGGAGCTTTGTGTTCAGTGAAGGCAAAACCAGGAAAATGGCGTTGCCTCACACTC--TAGAGC-TTTGTTTCATTAG---CTTCCATTAGAGTTTTGGTTCATCCTCAAGTGCTGATGATTGCCTAGAGATTCAGATGGGCTGGACATAGGAGGACTACCTCTATTCTAAGTTCAATGTTAGAGTTTTATTATAGTCGTAGA--TAACTAACAAAGAAGTATTTGGGGTTATAGATAAGGTAGATTGTGTCACTAGAGGTACATTATTAATAGGGAACC
s HiC_scaffold_1 133617870 1472 + 233722169 AGGAATCTTCTGGTATTTTAATGGCTAACTTCTCAGatttgaataaagaataatatttcattaagag-TACAGTAAGATAtctagttttcttaaaaaaattttaaaggggacATTGAAgtataaatcataaatatatagttttaatatttgtataagTTGA---ATAAATAGAACAATGAAGCAATTAATTATACCTTTTTCAATATAACTACTACCCAGGCTTCTTCAACATCCACTAGTGTTT-atgcttttagtatttttctatttGACTTCATAGTGACTCCAGAAAAACGTAAGAGAAAGTTCCTAAGGCATTTATATTATT------------ATGGCTAGAGAATGAAAACCTTTCATATAGCtgtaaaaatactgttttagtataaaat-tttaaaaactatttcattGAATGGGATTCATTAACCAAATA-CTATAATTAGTTTGCTTCTAAATGAAGCTCCTTTGCCAAGCGTGTATAATGCAGGCTCAAGGGCTGGATCCCCTGGCTTATCTGGCCTCATTGAATAAAGAGGAATTGCATTGGGTTATGTATAAAATCTGTAATACAGTTAATATGTGTAAGAAACAAAACTTCCTTCATCTATCTTTTTGATTATGACAGTTACTTACCACCATAGGCTGCATTTCCTGTAGGCAATCTTTCATCTGgagttttaatattattttatgatgattgGTATAGAAATCATTAATGAAATGGTAGTCTGGAGAATTAGAGTGAAATTCTAAAACTTTTGCTGTGCAATATATAATTTACTGAAGTACtatattgtaaaattttaatt-tatactg-------------------TGATAAT-GTATAACAGATTCAGCTATGTATTGTTTGTATTAC-AGATTTTAGTGAATGTTTCTTCAAGATAACTTGTCAtggaactttatttttt--atctgaacA-TCTTCACTG---AAGTTTCAGGAGTATT--TGTGCATTATTATATGAAGATGAATGAACTTAGGAAAATTCTTGAGTCTGTTAGTGATTGTAACTTTATAAATACGATTTTCACAGGAAGAAGATATTTTGGATCTTCTGGAGCAATGTGAAATTGATGATGAAAAGTTGATGGGAAAAACTGCCAAGCACCGAGGACCTAAGGTACCAAATCTCTGCTTTTTTTAGTATCTAAGTAGGTGGTATTGAGTATAGTTGGTTTTCCCCTTGATATCTTTCATTATAAGACCTAGTGATGCTTTTACA---AAACTGAAGGGACTGTGTGACTGTTGCAGGTAGAATTAGAAAGGTAATGTTATTTCATACCcaataaaacttttgttttgttagtttctttcatt----ttttgacactCTCCTTAGTGCTGCAGAAACCCTTCTGAGTCAGAAGGACCTACAACTATTTGAGTATCCCTGTTGTAAActca---ttaaattttctttatgccTAAAGATGTAATTATCCAAGGTACGTGTAGCATTAGATGTAAGGTAAAT--------------CATATTATTGGTAGGGAGTC

a score=109386
s chr3           146936441 10111 + 160039680 [encoded data, 11072 characters]
s HiC_scaffold_1 133619581  9486 + 233722169 [encoded data, 11072 characters]

a score=18078
s chr3           146947016 773 + 160039680 AAAGAAGATTGTTAGGCTTATACAATCAATGAAACGTAATTAATAATTAATGTCAGGCATTAGATTCTTTGCTGTATTTCTGCTGTGTTCCAGACTTGAATGCTTGCTACAGTATCCATTACTAGGGTGTATACTGAGGA----------ATTCTGTAGAATTCTGTAGGTAATACA--------------------AAACAAAGGGCTAGTAGAACTCTAATTGAATATAGGCTGACTTTGAATGTATTGTTCAATATT-----CTATCACT-ATGTGGGTAACACAGCCCTGTGAGTAAAGATAGAAAAATCTGTGTTGGAGTCCTACCT--AAAATGTGTGTATCCAAGGATTTCTGGCTTTTACTC-TCTGAG-TGATATTACTCTTACTGGAGAGAAAGAAATGGGCTCAGGTTTAGAACCTCTGACTTGTCT---AAATCTCTGCAGGTATCTTTCTATGAATGGTAGAATTGTTATTATAAGTAGTGCTCTCATAGTGCTGTCACTGCACGGATGAATACAGTCATGGATAACAGGG-------------------TCATTCACTATTCTCTGTGAGCATTCTAGCCTAAATTTGTTAACTTCTCTCC--CCCAATAGATCATGGATAACTGGAAGCATTATAAAACAAAAGTGGCTTCATATTGGCTCATAAAATTGGACTCTGTAAAACAACGGAAAGTGAGTAGCACATGAAGATCACTTGGCCATTTATATGTTCGTTAAGCTAAAA-TGTTTATTTAAGTTCAGAA-CAAGTTTACATATGAACATTTATTTGCTTATTTCTTCAACAAA----CACTGTGCACCTATTAT
s HiC_scaffold_1 133631298 809 + 233722169 aaagaacatacttAGATTTATGTAagcaattaaatgaaattaaaaattaacatcagATACTTGATTATTT--TATATGTGTGCCCTATCT---GCTGGAGTGTGTTCtgccatatatattat----atatgtactgtatatgtatatcatatactgtatatgtatatacagtaTACACTCAAAACTTTTCTAGACTTATACCAAAGGAGAGTCGAATCCTTATTAAGTATACATTG-CTTCATTTGTGTTATTTAGTGTTAACAGCTATGGCTGATGTGGTTAACACAGCCTTGggaataaagatagaaacatCGGTGTCTTCGTTATACTCTCAGAACACATGTGCCCCAAGACTTCTGACTTTCATTCATCAGAGGTTATATTTTTGGtacatgaagaagaaaaa---------gttt-----ctttGCCTTCTGttagaagtctttg-aaatgcCTTTATATGaatttcacattctttattaCAAGTGTTGTT---ACAGTGCTTTCATT-CAT---TGTACATAGTCATTACTAAAAATGGTGTTAAgccatttactttttatttgttactTTTAATGACTGTCCTAGATTACATTTCTTAATGTTTCTCCTTCCTAACAGATCATTGATAACTGGAAATATCATAAAACAAAAGTGGCTTCTTACTGGCTCATAAAATTGGACTCTCTAAAACAGCGAAAAGTAAGTAATGCTTGTTAAAAAGTGTTCCTTTCTTAGATTA--TATACTGAGGTTGGTAAGCCAAATTCATAGTCAAACCTCCACATGcacatttatttactcattttttctataaatgttCATCCAACACCTACTAT

a score=39249
s chr3           146956007 1726 + 160039680 TCATTCTTTCAGCTCTGCTCC-TGTGGGATGCAGTTGCTAAGTGAGGATAATTAGAAGTGAAGGAGGCTTCTATGGG-GAGCACCCAAGGGGAGAGATCTGAAGGAGGCAGGAAGAGCATTTCAGCTACAGCACAGGTCAGACTTGTGAGCTGAGGGGAGGGGGCAGATGGATGGAAATGACCTCAGCCTTAAGTGAATCTTAAGA-TGGTGCTGGCCAGGCTGATGGAGAGGGTAGACTAAAACTGGGTGTTGGAGGGTTGACACCAGGTAGCAGTGCCCCCAGCCATGCGTGCTTCTTCAGTGGGCGCAGCCTAGGTAAAGCTTAGGCAGTGACTGACTAGTACAAGTGATCCTGGGTGAGAAAGCATTGGATGACCAAACTCCTTTA-----AAACAGGTTGATCTGAGTTGCCTGGACCCATCGCT---ACTCAGGCTGTGTGTTACTTA-------------AGAATTTATTGGCTGCCGATTTTGTCCATGAACTCAGCTGGGTGCTGTTGGGGATTTTGAAAGTTCACTTCATGTTTTTAGTGACTTAACCATGAACTCTTCATGTGTGTGTGGAGGGATTGGCACATCCCAAGCATT----------------------CATACTTCCATGGAGGAAATA-------GATATTTATCTCACTTGTTT-TGGTTGCAGGACAGTGA-TATTGCTGAT-GTTCATCAGAGTTCTGTAAAATTCAGAGCTTAGCTTGCC--AAACACAGAGACTCCCGCATGCTTTGTCgtgtgtgtatgtgtgtgtgtgtctgtatgCATTTTTATGGAAATAAGACTATTTGCCTTTCTTCCCATTTTCCTTACTAGGTATAAAATAATAAAGAGCTGGAGCTTAAGAATTAAATACTGGGGAGAATCTTCAGAGAGTGGAAGTGGAAATAGTTC-TCTCATGTAACATCAGACTGTGGCAAACCTGCAGTTGTGCAGTCTAGCCTTCTGCCAAGAGCCG---TGCTTCCAACGCTCCATAAGGGATATATATATATATGTATATATGAAGTACGAGCATG-TGCCGCGTTGATGGGCTGTGAAGAACGCCCAGTTTGCTGAAAAGCACATTCTCTGTTGTCATACATAGGCACGAACTAAGGTGGGGGGA--------------GTGTGGAGAACCCAGTCATAGTCTATCTGCATTTGTTTTAGAGTTTTTAATGGATCCCCGTTGACCAGAGCTGCTTGG-------TAGCAAATCCCTTTCCACACCTACCTCAGCGGCTGCTGCTTGTATTTCGGCTGCTGCTGTCTCCCATCTCCGTTTCATTTGGGCTGACAGGGGATGCTGTCCCGAGTGGTTCATTTTGTGTCAGCAAATACGCCTTCGCCCTATAGGCGCGGCGGCTGCACACA-TCATTAGAGCTGTGCACACCGATTTTAATGTTGCTTCCAAACTGTCTTCACCTCTTGCCATTATTTTAATTTAGGACCAAACTGCTCAGCCATATGGAGTAGTTTGTCATTCAGTATCTGTAG----TGGCAAAATATGTATTTATCTGTGTGCGTTATGCCTTCAGATGGGCTATGTTTCACA---AGAAGACAA---GTCTTCACTTTATTAACGTGGCCATTCCCTGAATTTTTCCATCTGCTTTTCCCACAGAGGGCTTAATATTAGTTGGGATGCTTTGCAAAGTC-----ATAAAGAAATG-ATACTTA-GTTCTGTACGTTGGCTTCTCTTGAGCCCACAGTTAAATGCAAGGACGCCTTGCTGGCCATTCATCATTATACTTCACAAATTATTCAGCATCTgggcagg
s HiC_scaffold_1 133641258 1714 + 233722169 tcaacCATTTTGTTCTCCTCCCTTTGGAAAGCAGACACTAA---AGTGGAGTTAGGAGCtaggaaaatatttatatacGAAAAC---AAGACACAGAGGTGGGGTAAGCAGGAAGAGCCTTTGAACTGCAATGCAGATATGACACCTG--CCAATGGAAGAGGG----TGGGTAGGAAGAGCCTCATGCTTCAGTTATACTGAAGCCTTACCTTGATCAGGCTGCCGGGGAGTCCAGAACAAAGTTGGCC--TGGGAGGAAATAGCCCTCTACCAGTATCCC-AGCCATGCTCAGTTCTTGGCCCTGAGCTGTCTGGAGAGAGCATAAGTATAACTTGGATGTTACAGTGTATCTTG------AAAGCATCAGCtaactgtacttttttttttttaagtagactGATTTTAGTGACATATCTCCATGGCTGCCACAAAAGCTGTGTGTAATTTAGTTTAATTTGACAAACCCTTATTTG-TGCCAGTTTTATATAAGAACTATGCTAGGCACTTCTGAGGACTTTGAGAGttcgttta-----tttatttactctaaCAAGCATTCAGCAGCTATTTATTGAGGGATTATCATGTCCCAAGCACTACTCTAAGTATGGAGTGTGCACCTTACTTCCACTTAAAGACCACTTTTGAAATGtgtatctcatttttttctgtttccaggttggAGGCTTTTGCTGCTTGTGCATTAGAATGTTGTAAAACTTCCAGATTAGAATGCCGCACACACAAAGTCTCccacatgttttccttttt-----------tgtgttcttggaaata---------aaagaatattatttgCCTTACTTCACATTTTCTCTAATGGGCATAAAATA-TAGAGATCAAGGGTATAGAAATTAAT--CCTGAAAGAGTCTTCACCAGGTGAAAATGGAAATAGTTAATCTTATTTAACGTCATGTTGTGGTAAATCCACACTTGTATGATTTAGCTCTCTGCCAAGAATGTGGTTGCTTTAAATAGTCTGTGAGGAATACATAT--------------GGAGTATGAAAATACTGCAGTGCTGGTGAGCTGTGAAGAATGCCAGGTTTGCTGAAAAGCTTAT-CTCTAATGTGATACCTAGGCACAAATCAAAACTGGAAGATGAAATCAGTAGTGATATGAAG------GTTGaactatatttgtatttattgtagG--TTCTAAGATATTCTTGTTTACCAA--CTGTTTCGGTCTACATAGTAATTTCTTTTTACTACCTACTCATGTTGCTTCTGCCTGCATTTTGA-TATTAGCACATCCCATCTCT-TTTCATTTGGGCTGACATAG-atgctgtttggagctgtt-ggtcgGCATCGGCAGAGATGCCTTTACGCTATAGCCATGGCTGCTGCATACAGTCGTTAGTACAGCATGTAGTAATTT-AATGT-ATTTCTAAACCAT-GTCACCTCATGCCATTATTTTAATTTAGGACCAA-CTGTTCAGCCATATGGAGCAGTTTGTCATTCAACATCTGTGTGTTCTTGCAAAATATGAATTTGTACGTGTGGTTTATGCCATTCAATATGCTGTATTTCATAcagaaaagacaattttttttcattttattaatgttatCATTGACT-AACTAAGCTATTTATTTGTCCCATGGAGAGTTAAGGTTGAATTGGGATGCTTTTAAAAGTCATTATATAAGGATGTGAATACCTGCATTTTATAAATTAGCCTCACTTGAGCCCACCGGTAAACACAA------------------------------TTCACAAATTATTCATCTTCCACACAAG

a score=18468
s chr3           146961541 401 + 160039680 CATCTTTGAAACTTAGACTCATGTATGCATATGTAGATTTTAAGTACTT--GTTTTTCCACTAGGTTTTGGACATAGTAAAATCAAGTATTCGTACAGTTCTTCCAAGAATCTGGAGGGTCCCTGATGCTGAAGAACTGAGTTTATACCGGATTTTCAACAGGGTATTTAATCGCCTACTCTGGAGTCATGGCCAAGGACTGTGGAGCTGTTTCTGTGATTCAGGGTAAG-CCGAAGTCATTTATCTTCTGTTACTG-CATTTTAACTCTGTTGTTATTTAGTCATAAAGCTAGACCATGGAAATGGTCAACTATCTTTAATAACAGTCCTTTAATGCAAATTTTTACTGCATATATTTGGAGTACTCAAGTATAATTTATAGCAACTAAGTTGATTTGGACGAG
s HiC_scaffold_1 133645716 381 + 233722169 CACCTTTGGACCTTGTATACCCACATCTATACCTAGATTTTAAGTACTCTGGTTTTTCTGCTAggttttggacatagtaaaaataagtATTCGTTCAGTTCTTCCACGTATCTGGAAGGTTCCTGATGTTGAAGAAATAAACTTATATCGGATTTTCAACCGAGTTTTTAATCGCTTACTCTGGAGTCATGGCCAAGGACTATGGAATTGTTTCTGTGATTCAGGGTAAGTTCTAAGTC----ATCTTTGGTTGttgacatttttaatattttactgtttAGTTGTGTAGATAACCCAGTATAATAGTTGA----Atttaatgat-gttttaaaatatgcatttttac---------------tACTCAACTCTAATTTATATCAATTAAGCTGATTTAGATAAG

a score=62904
s chr3           146965933 5052 + 160039680 [encoded data, 5595 characters]
s HiC_scaffold_1 133647371 4896 + 233722169 [encoded data, 5595 characters]

a score=23700
s chr3           146975957 1394 + 160039680 TTAATAAGTGTAGAGATTTATCTTAGTGTGGTGGCAGGTTTCTAGACTTGCAG--GTGGTTATATAAGATT-----AATATACTTAATGTAGTGAGTTTTATATCCCAAATGATAAGAATAATTATTTCTATGTCACAAAATTTCAAGTCAGTAAGAAAAGTTCTGCAAAGCACA-GGGCACATAGTCTGTTGAATTCTATTTACA----GTCCTCAAACCAGGAATCTGGGTTCACCTGAAGGAGTTCAGGGGACTTTGTCCTACTACAGGGAGATGCTGGAAGGTGAGTGC----CACATGTTCAAAGTGAATTCCCTATGAGTTTTGGATTGACTAGTATTCTGGGGA-TCACCAGAATTAGCAATAAGATAGCATATA------CAATTCTATACCAATCCAGAATTTTCAAAGTATGCATCCCTACGTCTACATGGTGGGCATTCGAGGATGATCACACCCTGCCTTCTGAATGAGGAGTATGGCTCTGATGTGAAGTGAATGAAGATGCTCTGATGTACTGTTCCTGGGTACCAGTTAGCTATGAGTTACCCTGGTAAAGAAAAAAAAAAAAAAGCTAAGATAAAAGC----CGCAAACTTCTTTATATTTTTGGTACTT-ATATGAACTCTTCAGGTATAGTCTATAAATTCACTTCCCCGAGACAGTTTTCTTGCTTAAAAAAAAAAAATCAAATTGTGTTATTTAACTCCAACGCAAAGAACAATTTAAAAGTAATCTTTGCTGTTGAGCTGCTGTGGAGTCTCCCAGGAGATATTAGTGGAGACTTCAAGGCAAATAACTTGTGCTGTGCTTC---ATGGCGCCTTGCACTA-CCCAGGGCATCTGTTTTAGGTGGGCAGGGTCTCTGCAGTATAATTTCATCTGCTTGTTCAAGTTCGTGATGCACTTCGCTCTCTCTTTTTCAAGTCCAAAGGAACAGTTTCTTAGTAACTTCCACTTGT---GTTAAGATGTTGGGGTTTGTGGCATCTATACCAGCACTGTTCTTCCT---------TTCCACCCTTCATGTTTCTG-GAAGCACATAATAACTGCATGCA--AGTTTTATGATGACA----------------AGTATCTCGAATTGTCATGACCAAAAAGTTCAGCCCTGGACAGCAGCAATCCCTTAGATGTGCAGAGGGCTCTGAAACTAT------CAAGTccct---tcactagctatgtgacaagggggaagacatttgaccctct-gtgcttcataaagtttattcacccttaaaatgttgttagcagtgacatttacttagatacttgttatttg-aatcaaat--gttaatatttataaagagattagaagtgtcaacctataaaatactatttaagtaattgt-ttagtattTAATAAATCACCCAGGATCCTGTACTCTGTGATGCTCTATTCACTTGTTCATGTGATAAGTAGAGCTTTTGTAA
s HiC_scaffold_1 133659847 1365 + 233722169 TTAAAGGGTATAGAGTTTCTGTTGGGAATGATTAAACAGTTCTGAGATTGTGGTAATGGTTATA--AGACTCTGTGAATGTACTTAATTCACTAAATTgtacattt--aataataaaaaca--tagttTCATGTTGTATAATATtactgcaataaaaatattttttaaaaaccaatggaCAAATATTCTGATGGCCTTTCTTTACCCTGCATTTTCAAACCAGGAAACTGAGTTTATTACAGGGA--TCAGGGGTCTG-GTCCTATTCTACGAAAATCAGAGCAGGTACCTGTAGCATACATTTTCAAGGTTAATTCTCACCGA-TCTTGAAATGCCTCATGTTTTAGAGAGCCTTCATGGTCAGCAATCACATGGCACATGAAAGACCAATTCCGTGGGAACCAAGCATTTG-AAAGTATAGGTTT-TGTGTCTATATG-----------AAGATATATACACCTAGTGTGAGAGATGAGGAGTGAGGCCATG-TGTGTGTAGAAACAGGATGTT-TGAGGCATTTCTCCTTGGCATGAGTTAACTGTAAGTTATGTTTCCATAGAAGAAATAAACTAGAATAAATATAAAGTTTTACATAAGCTT-TTCACATTTTTGGTGCTTTATACAAACTCATCAG--ACAGTCTGTAAATTCACTTCCTTGAGCT--TCTTTCtgcttaaaaaaa-----tcaaattgtatTATGCAATTCCACTGCAAAGAACGTTTCAAAAATAATCTTGGGTGTTTGCCTAGTGTGAGATCTCCCAAGAGATATTAATGGAGATATTAAGGCAAATAATCCAT--TGTATTTCTCTGTAATGCTTAAAAGTATCCCATAGTACTTCCTTCACGTAAGCAGAAT-TCTTCAGTGTAATTTCGTGTGCTTTTTTTAGTTGATACTGCAC-------------TTTTAACtgttaaaaaatttcattttaacattttctgcttttctattgAAAAGTTTGTGGACTGTGAAAT----------ACTTTTCTGTTTCGTAGGATGTTTTGTACatcatatttctgaaaaatacatGGTAATTGAACCCAttagttttaaaattgtgatttgcATATACTAACATTATGCAAAATTGTCATGGC--AACAGGATAGCAGTGAGGAGCACAGATGCT---GAAGTG----AGGCTCTGTAGATGTGAGTCCTAGGTCCTTTACTCAGTAGTCACATGACCATAAGACACGCATTTGACCCCATAATGCATTGTGAAGTTTATTCATCTGTAAA--------------TGCATCTGTATAGAAG--TGTTGTGAGCAACTAAATGAGTTAACATTTGTAAGG-----------GCCA---CAGAAAacactatttaaatatttgtaataaaataatgtaagttAGCTGTGGTTCTGgcctttgtgat------tttatttttctatatattaaaTGAAGATCTTTTAA

a score=32771
s chr3           146977885 973 + 160039680 AAGTACCTTAGTTTATTTTGCACCTT-GCCCTACATAAGAAGGGAAGCTGGTTTTTTTTTTAATGGCAAAACATATCAGATTAATCATTAAGACATCACCAGCTCTTGACATCATAATTAATCCATATAAATTACCCTAGTGATATTAAGAAAATAATTTATATAATCTGTGATGTGAGAAATCAGTTGTTTCATTATTCATCACCCATTCTGGAATTTTGATTTAATTTAGTTTGTTGTGTATTATTTTACTGCTCTATTAACTTAATGATTGGAGCAATTATTTATAGTTTGTGATATTAGGTAACAGATTTAGTAGGTATTACT-----ATTCATGATGAAGTAATGTTTATGGATATTATGGAAAACTCTA---TTTTAATCTGAATGCTGTTTGCAGTTTGATTATAATGGATTCTTTTCTTTTTCTAAGATTCACAAGAAACAACGGTAAATTTACTTCCCCATTAATATAGATGTATCCTAATTCTCA-CATTATTGTACACAGAATAGACAGCTGACA-GCTCTTGCCCCTCA-TTCTGTTTCTTCTCTGTTCATTTATGATGCTGTCCCTAGAGGACTCCAGTG---TGCAGAGCGGAAGTGAAGCAGCTGACACACCCCTGTCATTTGCTTAGTCTTTCTGAGACCACAGCTAATTTGTGGTC---TTCTATTGTCACATCGGTGACTGAAGATTCATCATGAAGATTCATCATGCTTATCTTTGTCTTGATTTTACAGTGCATTGCTCAAGTCATTACTATAACTTTGTCTTTAGATGCTATGGTTAATTTCatatatatatgtatgtatgtatatatatgtgtgtgtatTAAATTCCATATATATGGATTTCCTTGGCCATTCATCTCCTGCC-TATAGATTGGACTGACAAAAATTTTATCAAGG-------TTTTCACAGAAAGAGATGATATGGATGTACAACTTATA---TGTAATTCACAATTTTCAACGATTGACATTAAAAAA
s HiC_scaffold_1 133661380 916 + 233722169 aaatatattagtttatttttcacCTTTGCCATACATAGGAAAGTAAGCC--------TTTTCACAGCAAAAGGTATCAAATTAATCATCATGACTCCACCAGCTCTTGACATAATAATTAATCCATATAAATTACCCAAGTGATAttaagata-taatttatataatctaTGATGTGAGAAATCAGTTGTCTCATTATTCATCATCCATTATGGAATTTTGATTTAATTCAGTTTGTGGTATATTAGTTTACTGCTCTATTAATTTAATGATTTGAACAATTATGTATAGTTTGTGATATTAGGTACTAGGGTTAGTATACATTATTAGATAATTCATGATGAAGTAATATTTATGGATATTATGGAAAATTCTGCTCTTTTAATCTGAATGTTGTGTGCAGTTTTATTATG------cattgtctttcagtagatttcaTATAAAACAGCTATGAATGTAATTTTCCATTGGCAGAGTGGTATCATAGTTATCAGTACTATTTCATGTAGAATA-ATGGCTAATAGGTTCTTGGCCCTCacttttatcacatatttatgaaTTTGTGATACTT------GAGGATTCTAATGAGCtgaagaactaaaataaatcCTTTGATA---CTCTACCA-CTGCTTA-TTTTTCCAAGACCACTGTGAATTATAAGTCTTATTCTATTGATAATTTTACTGTTGGAAACTCTT------------TGGTAGTTATTTTGGTCCTGACTATAGTGTGTCCTCCT-----------------GTTGTTTCTAGGAATTACAATTTGAAtagtatttatttgcatttgttcatGTA------------------------------GATTTCCTTAACTGTTTCTCCCTAGATGTGTAGATTAGACTGATAAAATGCCAAtcaagggcttttttttttaggCAAAGAGATAAGTCCAGTGTACTGTTTCTAATTTACTGTTCCTAAATTACAAAGCtagacaacaaacaa

a score=124966
s chr3           146978870 5810 + 160039680 [encoded data, 6467 characters]
s HiC_scaffold_1 133663486 6049 + 233722169 [encoded data, 6467 characters]

a score=41938
s chr3           146986473 1810 + 160039680 CACTTTATACACTAGTAA-GTAATCAAGACACACTGTATTGCAGTAAACAATGGGATTATATTTATAGGCAGGGAGAGTCAGACCTGGTGCAGGAAATTTACTAGGCCTTGTCCCTTGGGATTTGGCCATTTACAGAGACCATTTAAACCTGATTTTCAAGAGTGGTGGCTTGAATCCAGCAAGCATGGCCAGAAATAAAATAAGCTTAATGGTACACAAGAATCAGGCAAGACATTTGTAACATAACTGTGATGTGCAAAGAAGTGTAAAATACTTTAAGAATCTTGTCAGAATGCCATCAGAATGGCCAATGAAGAGACATTCAACATCTATTGGGTCCTATGTGATAAAGGCTTTTGTCTTTAATGAGATTCCAACATTACTCATTGGCAGCCAAGAGCTTTGCATGCTATCTTGGTGTGTATTTAGAAGCACTTGACCGTCAAGTGAAATGAAATTCT----CAAACAAAAGG----CCTGCTGCTCATAGATGGAGATGGGATTTATCCAAAGCTTGTCACAGTATTTGTGAGAGACAATATTTATCATGTCAGATGTTTTCTTGTGCC-TGTTTTCTTTAGAGAAACACAGTGGCACTTTT-----CTCAGTAAATTCTGTCGCAGTTGTCTTATACCGTGCAAAAACACCGTGGAATTAT---CTCTCTCTAACAATATGACAAAGCCACCCTTGGTTGTATTTAAGGAGTATAACTTAAAATGTGGTATCATGGCCTAAGCTGAAAAATTAAACATTCTTTGCTAGGTTTTAATTTTTAATTATGGGTATGTATGTGTGGGTATATGTGCACATGAGTGCAGTACTATGAGTACTGGAGTACTCTTCAGTCTCCCATACTGCAGGATTTCATGCAGTTACCAAAAATACTGACATTAGCATCAACTGGGTAGCAGATTTCTTGAGGG-------GGGGTGGACACTCACCTTCTTGAAACTGTCATTTGTGACTATCTTCAATATTCGAGTCAATGATAGAAACTCAGAA-GATGAGTAAACGAAGCAGCC----CTAAGAATGGGTGCAAGTGGAGACATAGCCTCTGCATAGTCAA-TCAGTTCTGCAATAACCAAT-CTTTCAAGGGTAACCACTGAACATGTGCACTGAGCCGAGCTTTGTTGTAGTGTGGCTGTTGTGTTGCTTGCATTAGAACAAGATCCTCTCAAA--GATCA-AGAATGGAATCAATTCTGAAACCTGCAGCATGCTGTTA--GCAGTAAAAATGTTAATCTGCTTGTTTATAATGCATCTGACTTAGAGGAAAGGTATATGACACCGTATATCTGAAAAATCGAGAGTATATAAACCTGAATACATTCTAAGGAAACACCATTTCAGCATATTACCTCATTTTCATTAAAATGATGAAATTGTGAGTACAGAGAATCACTTAGTCCTCGGGCTAAAAATAGGTAGATCATCAAAATCTAATATCATTTTAGCTCAAATTGGTATTTGTTCAGTAAATGTTCTACTTCATAACGTGAAAAGTACAAAGGGAAAATTCAAATTTGGGCAAGAAATAG----GGCTTTAAAAACCAAACAAA--TGGCACATTCTATTGT-TTTGCCTT------CTGAGCTATCGGCTCGCCATGAAATGTTTATTGCAAG-AAAGAACAAACAGATCCCTCCGAAGTGATCTTGTGTTCATCCAGTACTGCAGCGTCTTAGCCCCGGGTGCTTCAGCCAAGTCCTGCTTATATTTGATCTTCGATTATGTCATCTTTC-----------AGTTCTCTTCTACTCACTCCTACCATTTCTC-TGTGAAGCCCAGCTACATTATGTACaataaa---taaataaa---------taaataaaAATAAAGGA
s HiC_scaffold_1 133670026 1675 + 233722169 CACTTCATTCACTAATAAAGTAACTAACATA---TTTAT--CAATATTCATTGGTGGTATAAATATGAACACTGAGAGTTAAATTTAGTGCAAGAAATATAGCAGGGCATGTCATTGAGAATTTGATGAATGGTAGAA--TATTTAAACGGGGTTTCCA-GAGGGATAGCTTAAGACCAGGAAGGGTGGTCATAGATAAAA-----------GTAGACAA--ATTTGATTATACATTTGCAACACAATTATAATAAGCAAAGGTATGTAAAATGCTT-GAGAATATGGTCAGAATGTGATCC-AACCCCTTATTAAAAGGTGTTAATAATTTATCAGGTCTTACATGGTGAAAGTGTT-------AATGAGTTT--AAAGTTACCTATCAGGAGAAAAGAACTTTCCATAACATCATGATAA--ATCTAGAAGACTTTCATGGCTACCTAAGAGCATATTCCTttacaaacaacaaaacattCTATGGCTGACCTACAAAACTGGAATTCATTCAGAATTTGTCATATTATTTGTGCAAGACAAtgtttatcatgtta----tttttttgaacagttttttttttaaggtaacaTTTAGGCACGTTTTAAGCCTTAGtag-ttttgtc--atttgttttattcCTTGTAAAA-TATTGCTCAATTAGTAGCcctcttttaaaatatagtaaatttgCCATTTATTACATTGAGGGAATATA----------------------------------------------------------------------------------------CATATAT-----TGAATG-----------GTATTGTAGTGa----------ccaaaactgaaacattttacaCAGCTATCCAAAATACTGAGATTTTTGTAGACTGAGTGGCA----TCTTGACTGTTACACAGAAATGAATAttcaccatttttaaaatgttattaa-ggCGGTCTTCAGTATTTGGCATATTAATAGAAAC--AGAATGAGGAGTAAGTT---CTGCCTTGTCTAAGAATAGATACAAATGGACATAAATCCTTTAGGTATTAAAATAGGCCCTATGATGaccaaaattttcaaaaacaaccacaaaac-----tATATAGTTAAGCTTTGCTTTATTACAGCTCTATTACTGTTCAtgttagaataa-----ttttaaaatgattgcaaaatataa--aattcttaaac----agcattttgttatagcagtaaaa-tgttaatatgtatatattta---tatctgaTTTAAAGGAAAAGTAT--GACACAGCATATATGAAAAATC---AGTATATAAACCTTACTACAATCTAAGAAAGTACCATTTCAGCATATTAcctcattttcattaaaatgatgaaaacatgaATACAGAAAATCACTTAGTCCTTAGGCTAAAAATAGGTAGGTCATCAAAACctaatatcattttaaattaaattagtatTTGTAGAGTAAATGTTCTATATCATAATGTGAAAACTACAAA-GGAAAACTCAAATTTGGGCAAGAAATggaagagattttaaaagatgagCAAATTTAGCTAATTGTATTGTGTTTGACTTTCTAAACTGGACAATAGACTTG---TGAAACATTTACtacaaacaaagaataaatagttTCTTCAGCTATGAccttgatttt-------------gtattttagctTCAAGCTACAAAGTCAAATATTACTTATATAcccttttcaa--atgttttcttccatatgtttctaaatttcattttactCAGATTTATGTTTTCTCATAGAAAACACTGCcacattattctttaaaaatgctaagtaaatattgcttttaaaaaaaaatacaaaa

a score=29664
s chr3           146991059 1418 + 160039680 AATATATAAATTAATGTTATGTCCTTTAAGCCAGCCTTTATTGGCTATTACATCTAGTTTCATTTTAACAAACACATGTTTCGTATTAGCTAG--CTAGAATCACACTAGTTAGTAAAGAAAGAAATTAC--------TAATATCCTCATTTTCCAAGGCCTTAAATTCTAGTATAGGAAAAAGCCATCTGAAACAAAGTATAATGAACTTAGATATAAATAAGAGTTGTATGTGAGGAAGTTTATC--AAGTGTTTATTTGTAGCATGGACTGATGGGAGGGCCTGACTCTAATTCCCAGGTGCCCTGGCTCTGAAGACATTATGTATTGGTCCTAGGCAACTGGTTTAGCACACTGCAAAACTTAATGTCCACTACTGTAGATTAGGGGCAGGCAGCAGAATGAGGCAAAAATTTCTGGGTTTTGTAGTTTTATCTTTAACATGGATGAGAAGTGTGTAATGCTATTGCTGTAAGGctgggttcaaatcctactctatcactttcccagagcagctccttggaaaggcacttagtgagtgccttacctctgttttcctcatctgtaaaatggggtgatggttggcgtgcccacaggggttctgggaagatcTATTTGTACACCTGTGTACTCAGTAAGCTATAGTTTTGTTTTTATTCTCTCTGATGAGGAGCCTCGAAAAGAAGCTGTTCCCCAGGGTCAGACTTTCTAGTTTATTAAATCAACACCTTTATTGACTTGTCGTAGTTTTTAGAAAGTTATTTTTATTATGTGG-CTTCACAGTAGATTCTGATTATATGTTGTATTTAAAACTGATTCTCACACAGCTTCAACTTAATGACTTGT-AACGCTGAAAACTGCATTCTCATTGATTGTGCTGTGCCTGGTGTTGATTCTTTCTGTCTCTGCTACCGATATGATGATTTTTCTGTCCTCACATCAATAACACTAGGAATGGCCTTCTATCGCCAGATACCTTTTCATTTTGAGGTTTAAGTGGCAAGTGAGTGACTGTCTGTGTTCCGTGATC--ATCTTTTCTAGCATCTTTTCATTTCCAACACAGTTTTGCTATTGGTTTTCATTATGAGGAAACG------GAGAGCGATTTGAAAGGCCCCATTTCTGCATTCAACGGCTGGTGCTGTCGGTCAGCTGCTCAGTTGTCTTATCACTGATAGGGACATTGGTGGAACTGTTTAGCTGAACT----CTCAGTGAGTCTGTTTACATTATTTTTATATAA--AATCATTAATTGATAGTAGGTTTTTTTCCCAACAGAACAGTAACCTTGATGTATAACATCTTCAAGTGAGTCCTGGGAACAAAGGCAGAGCTGAAGTTGAAGTAATAATC---CAAATCTTTCT--GATAATCTTCCTTACATAGTGGAAGCTATACT---GGACTCAGAAATTTCTTGGATGTGCACTGTGAATGCATT
s HiC_scaffold_1 133675375 1163 + 233722169 AATGCATAAGTTAAC---ATCCCTTTCAAGCCTGCTTTTCTTGGCTATGGCATATAGTTTCATTTCAACAAACG--TGTTGAGTATCAGCTGTGTCAGGAACTATGCAAGCTAGCAAAGAAACAACTTATGACCAAGGTAACATCCCTCCTTCCCAAGAGCTGAAATTCTAACACAATAAAAAGttatct-aaataaataattatgaa-----atataa--------------taAGGATGAGTAGCCAAGGTGTTATTTTTTTGGATG--------------------------TCCC-------------CCTAAAACCCCATGTTTTGA--------AAGGGGT---------------ACT--ATATTCATAA--GTGGATT-------------------------------------TTTCTACTTATGACTT---CCTAGATGA---------------CTTGCTCATGAATTGGGTACAA-------TCAATCA----------------------------------------------------------------------GAGGCAGTCATTGGTGTG------------------AGACCTCCT-----------GCACTAAGGAG---ATTGTCTCAGCTTCATCCTCCTTGATAATGTTC-----AAAATAACTGTACCCTGGggtcaaattttttattttattaaataaatatctt-aCTGATATGGTGCAGTTTTTAAatagtcatttttattatatGGGTTTCACAATAGATTCTGATTATATGTTGTATTTAAAAC--ATTCTCATATATCTTCAACCTAATGACTTGTTAACATTGGAAATCACATTTCCATTGAT----CTTTGCTCCATGGTGATTCATCCT--TTCTGTTACTGATATGATGATTTTTCTGTTCT---GCCAATAATACTGGAAATGTCCTAATATCATcagttatcttttcattctgagGTTTAAGTGATAGACAA----CTCTTGCTGTTCAATGATTGTATTTTCTCTGACATCTTTTCATCTAAAATAT-GCTGTTTTATTGGTTTTCATtatgagaaaatacatgaaaagatgaatGTTAAAGGCTGTATTTTTGCCTTTGACGGCTGTTAATGTTCATCAGTGGCTCAGCCTTACTGTTGCTGTCACTGACACTGTTGAAGCTATTTAGCTCAACCGTTGCTCAATTAGcctcttttcattatttatatgtAATCACTCATTAATTATTA-----TATTCTCTTCAACAGAATAGTCACCTTGAGGCATAACATATTTAAGAGGGTCTTGAGGGCATAGGCAGA-------TGGAAATAATAATCAATCAAACCTTCCCTGGATAGTCTTCCCCACACAGCG--AGCTGTGCCTAATGAAACGTAAGCCTCTAGACCATGTACTGCAAGTTCACT

a score=40272
s chr3           146993479 1565 + 160039680 ggagAGGAATGTAAAAACACAAC--------CTAGTGGGGATAGATTTTGACTT-AGGGAGAGAACATGTTACTTGCGCACAATTTCTTTCCTGACAATGAAGCATGTAGACCTGTTTGATTTGTGCTCGTCTAAAAGCAAGGGGCAAAGGGGCCTCTTTGTGGTT----GTACAACCACGAAC--AGTTATACCGTGTTTCATCC----------------GGAATGGTGTCTTCTAAGAAAGCTTTTCCTCGGAGTTTATAGCCATTGTGCTTAACAAAAATTTGCTAATTACAAGT--TTTCTTTGGTAAGAAGAAAATGTCTCCTTTTCAGACCTTATTAT-----ATATCTATAGATGCGTTACTAAATGCTTAATAACCATTTCTGCCCATG-----ATATGCA---------------------------------------------------TGTtttctctctctctcgctcctttctctctctttttctGACAAAATCCTTATTTAAGTGTTTGCTGATTTATATCGTGTTTATTAGACTCCTACCATGACAGATTTTGTCTGACAGAATTATGGTATTGAACATAGAGTTGGTG-GACACTGTACACAGCTAATTCTGGCAAGCTGGTCCCAGCTGTTTCCAGCTCAGCACTGC---TCCTGAAATGAAAACTGATTATCACAAAAGGTT-------------------TTGGGCTTCT------ACTTATGCTTATCCAGTAACAATTTCTTGCTCTGTAATGGATCA--GTTTTTTCCCCCCTATGAAATAAAGTGGACGAAGCACTTAGGAGCCTT-GCTAAGGCTC-CACCTT-----TCGGCGATCGTTTCTCCAAGACCACGCGGTTAGGGCCTTTCCCGCGCCTCCCTTTATTTGGTACTCGGTTTATTACAAAATGGAGTTTCCTGGAGTCTATAAATGAACACATTGGCGTGTATACTCCCATTGGCTTCGAGT-CACATCAATTTAGAAACCCAGAATTATTTCAGGCACTACTAGCTGTTCTAAGGTTAGCAATTAGCATTTTTAATGTGTGCAAACGGCACCGAGAATGCGGTATCCAAACAGACTGTTTCTCTTAACAAAAAAACCCGCTTTTGAAAAAGTTGGAAAAAACAAACTCCACCGGCAGTCAAGTCGAACAGTGCTCCTCCTTCGCCAACAGAGAGCAGCATACGCTTACGTTACAGAAAGGCCTGCCTATGGCGCATCCCTCA--GAAAGCGCTTGAAGCCCCACGGACACGCCT--GTTAAGAACCCATTTCTTTACCTGCTCTGAACTTGATGGAGGAGGCGCTGTGATTAATTAGGGGTACATTAAGGCTGTTGATAAGGCATCCTATAGCCATCGAATTTTGTCTTTAGATATTTTCTGTGCACACTACGTCTCTCCACTAGGTTTTCACTTC-TGGTTTGCATTTACGAGTTTCTAAAAATTGACATTGTTTTGCTTGTCAGAAATGGCTTTCAACGGGACACA-TTTTCTCCATCTGGTATAACAAAGTTTAGGGGGTGGGGGTGGGGCAGTAAAAAAGGAAGAGTTTTAAACGTGAGAATGATGGCTTTTAATTTTTTATCTTGTTTTAAAACAAATGACTGTATATAATATCCCATTTTTGGAAAAC-AATGTAACTGGAAAT----CTTAAGATGATTTCGATACtg
s HiC_scaffold_1 133676973 1604 + 233722169 GGAGAAGTAGTTAAGAATATGACTGGAATGCCTCTCTGGGAAGTCTCTTGGTTTGAAAGAGAGGGAATGGTAATTTTGAACAGTGTGTATCCTGGCAATAATATGCCATAAATAGTTGGATGTATAAGTGTatgaaaggaggagg-aaagatgcCATTTAGT--TTCAAGATACTACTCTGAACTTAGTAATACT---TTTCATTTATAAGATATACAGTGTGTAATGGCTTCTTCTGAGaag----ttatttagaatttatatTCACTGCA-TTAGGAAAATTGTGTTAATTATATATATTGTCATTGGTCAAAGGCAAACGTCATCTTCTTGG--cttgttctttgtcatttctAGCACTGTACAGATATATGATTAAGAATCAGTCTCACAcatgcagagacagacagagagagaaagagagagagagagagagagagagagagagagggagagagagtgcttt--------------------------ttttttttacac--------------tgtttCCTAATTTCTGTAGCGTAAAT---ACTCCCACCATGACAGATTTCATCTGTCAATTTTGTGTCACTGAACATGGAGTTGGGAAGGTAATGTACGCAGTTAACTCTTACAAGCTGGTACCAGCTGGATCC---CCAG-GCTGCAGGTTCTGATACTAAGATTGGTTatctcaaaagtttaaaaaatttctttacatGTTTGGACTTCTGCCACCACTTATGCCTAGCCATCgaccttttctt--cctttaatggTCCATAATTGTTTCCTGC-----AAATACATACTGCATAGCATTTGGGAGACTTCGCTCATGTTTTCACCTTCTTTTTTGTGCATCAGGTTTTCAGAGCCAAATTAGTCAGTCCTGTAATGGTCCTCTTTGTACTTGGTACTTTgtttatcagaaaatgaaatttccTGTAGTCCATAAATGAA-ACATTTGAGTGTGTACTTCAACTAGCTTTTAATTCACTTCAATTTAGAAACTCAGAATCATTTCAAGTACTTTTAGCTTTTCTAAGACTAGCAATTAGCA-CTTTAATTTGTGCAAATGGCACTGAAAATGCTGTATCAAAACAGACTATTCCTCTTAACAAGAAAACc----ttcaaaaaagtttttaaaaaaa----tcagtggcAATCAATTTGGACAGTACTACTTTTTCACCAAGAGAGAGCAACATAAGCACACTTTACAAAAATTCAATGCTGTGGC-CATTTTCCATTGTAAGCAGTAGAA---TAGCATACACGGTTTATTTAGGAATCTGTTACTTTACCTTCCTTGAACATGATAGGTGAGGTGTACCGATTAGTTAGGG-----TTCTGGCCATTGATGATGCATTCCAAAGAGATCATATTTTGTCTTTAGTTATTTTCTATGTACAATGTGTTTCTTCCTTATGATTTCAATTCATGGTCCCTGTTTATGAGTTTCTAAAAATGAACATTGTTCTTCCTGGCAGCAAAGGTTTTCAGCAGGACACATTTTTCCCCATCTAGTTTAATGAAGTTAAGA------------------AAAATTGCAAGAGTTTTAAATATGTGAATGgtggattttaaattttagttttgttttaaaat-aataaatatgcgCAATACCTTACTTATAGACAATAAATATGATTGGCAATTTTCTTTATGATAATTTCAGTATTG

a score=13575
s chr3           146999230 615 + 160039680 ATGGGTTCAGAAGGCATTAGAAGGGTAAAGCCCTGCTTTGAATGGTTGAGGTCAGTGCTGATAGGTTCT-------------------------------------GGAAAATTTCTCAGAGGGTGAATGAAGTGCCTGTGACTATCTTGGGAAATGTGGA--ATGCACTGTGAACTCTGTGTGGCCTGGCAAATGTTAAATGCAGGCATATGTCAGTTATCAGCAGAGATCTAAGTTCAGAGAACAAGTTGTGCTTAGTGCTTTCATGATAGACTGCTC----GTCAGAGGCTGCACATATTCAAA-CTGGATGGTATAGCCTGTTACACACCTGGACTATATGGTGCAGCTA-TATCATACATGTGGCCCATTGCCCAATGAATCATTATGGGGAGCATAACTCATTTCATTTGAAAACTGAACAATGCCAAGTTCAATGCA--------CAGGTACTTGTGTTGATTTG-------TCTTTGGAGTTCCCAACACTTCCAAATAGACTTCCTTTTGTGCTTCTTTTAACAAGGCTGGAATTCCCTCCGACCTAACTGACCGCCTAGAAGAGAATGAAACAT--------TATCACACTTCTCTTAAAACAACAAACTT----AAGTCCAGATACTCT-GAAAGCCTATTTACTCCCGTGTTCAAATTAAGCCAGA-ATTTAGACAG
s HiC_scaffold_1 133681495 646 + 233722169 ATGAATAAGGGAAGCAATGGAAGGAAGACATCCTGCTTTGAATTGTTGAGATCAGCCCCAATGAGTCCTAAAATGGTCAAGATAATAAATACCTTTCATAAGACCTGGAAAATTTCTCTGAGGCTAAATGAAATGCCTGTCAATATTTAAGGAAATGTGAAACATGCCATGCAAGTTTTCTGTGGGCTGGTAAATGTTAagtacaggcatgtgtcacttaATGATGGGAA----------------ATGTGTGGCTGAGTGAGTTTATCAT---TTGTGCAAATGTCACAGACAGTTCTTACCCAAATCTGCATGGTATAGCCTGCCACAT----------TGTGCTGCAGCTGCCGTCAT--TTGTGATCTGTTGTTAACTGAAACATTATGCAGAGCGTGACTC-CTACTTTTGGAAACTGAATATTACCAAATTCAATATATACATCTCCAAATATTAGTGATAGTTTGGGATTCCTCTTTG----CCACGCCTCCTCTATGTGTTCTTCCTCTTGGTTTTCTATTTGTAAGTCAGGCGATTTATTTGACACAATGTAGTTTTTAGAAGAGAGTAAAATGTTCTTGATGTATGATAC------CAAGGCAGAAACTGTTTGGACATCCAGTTACCCTGGAAAGTCCATTT-CCCCCATGTTCAAGCTAAGGAAGAGATATAGACAG

a score=108307
s chr3           147000948 4204 + 160039680 [encoded data, 4488 characters]
s HiC_scaffold_1 133683525 4210 + 233722169 [encoded data, 4488 characters]

a score=16072
s chr3           147010251 519 + 160039680 GCTAAGGCCATCTAATGTCAGGGAGTCTTCAGGG------------AGATAAACTCTAGGAACTGCCATCAGTTCTGGGCAAAAGAACAAGA-AACTGCTGAACTCATGCTAGTCAAAATCAAAATAAACTTAATGCTTAATATAATACTAAAATCAAAATATATCAATA--ATGCTTTTAGTGTCAGAGTCATTTT-TGGGAAGATGTCAGAAATGTATTGTTTTATTTTGACTTTTTTTCAGCAGCGTTATAGTAAGCTTGGATTGAGGCATGA----GGTTTCTTTGAAGTAAAATTCAGTAATGCCATAACAAGTTGAGGGAAT--------ATATTTCTGACAAATTAATCAATATTAATCTGGTAGCAAGCTTATAATATTTCTATCTTCAAACATT-TTCCATGTAACATTCTGTTAATAGTTTGCTTGAAAATATGTAAGGTGTGATTTTTTTAGACATGCTAATAAGGTGAGGCTGGAAAGT-TGTCAAATATTTGATGCATGGAGACATCAAGAGACAAACTAGAAGGCCCGTCTCTCA
s HiC_scaffold_1 133689021 508 + 233722169 GTTAGAGCTCCCTGGTCTTGTGGAGATTTCAGTACACTAAACTCCAAGATGAACTCTCAAAATTACTGTCAATTCCAGGCCAAATTATAAAATGGCCATTGAATGGATGGCAG--------------GACTTA---------------CTGAAAACAAGACACATTAATCTCATCCTTTCTCTGCCGGAGCTATTTTACTGGAAAATCTTAGAaatgtattgtttcattttgacttttgc-CAGCTGTATCACAATAAACTGGAATTGAGGAGATACAACAGCTTCTTAGAAGTGAGGTACTTTCATGCCAT-----GTTGAGCAACTGTATCCAAATATTTCTAATGAACTAACCAGTATTAATCTGGTGACAAGTTTATAATACTTTTATCTTTAAACACTGTTCTGTGTAACATTC-GTTAatagttttcttgaaaatatggAAGGTATAA--TTTTCATGTATGCTAATAAGATGAGGCTGGGAAGGATatcaaacatttgttgaatggcAACA--AAGGGAAGAATT-GAAAGACTAtctttca

a score=133848
s chr3           147014116 8214 + 160039680 [encoded data, 8945 characters]
s HiC_scaffold_1 133691519 7596 + 233722169 [encoded data, 8945 characters]

a score=39044
s chr3           147030023 2416 + 160039680 TGTGTAAAATCTCCCCACTAGCGCAACAATCTTTTGCC--AGAAAGAAATCCTTTTACAGATAAGCCTGGGAGGGGCGGGGGAGAGCTTGTGGGGTGAAAG-AATGTTCAAACAGTGATAGGGTGTGCTCTAATACATGGTACTGAAGATCTTGAGGTCAAGCAAGACAATTTTAAGGTCTGAAATTGAAATTTCTCACTAATAAATTCTTTACCCCGAGAGACAGGGGAGCCTCGGACGAGCGAACCTGCTCACCCCTGGGAGCTCGTTCCCACACTGAGAGCAAACTCAATCTTCCCGGGCCAGGCAGAGGTCGAGCCCAAGTGGAAGTCTCTTTCTCTTTCTGCCTGTGGACTCTGGTTACTTCCCTGCTTGCTTGAGCTACCCAGTCTGCATCTGTAAGTGACCTCCCTGAAGGGAGGAGGAGAAAGTGGGAGGCATCCCTCACCTTGGCAACTGAAGCGCAAAG---------------------GTTTGTCAGGCTCCTAAAGGGAGGGATTAGATGCAGAAAACTTCCTTATGCGAAGACGGCACAGGACCAGAAAAGCCCCGCTGTAGGCACCTGCGTCTC---CCTCCCAGTAGAAAT-GATAAAAAACAAAAGAAAACAAAACGAATCCCACAGCACTGTAACAAATCACCCTGGACGACCCCAAATGACACGCCTTAAATCTGAGTGGAGCATAGCAGACTC-CTGCATAATTTGCAATCTCTATTATTTTTTTTTCCTGCACATACCTTACTTGAGTAGAAGTAGATTAGCAACTATGAATCATGGCTATGGTTGCTATTTATTTACTCAGATGGCTTTAATTCCTGGGATAGAGAACTTGGGAGAGTGGCTTTGATTCCACTGTCTATTCCATAGATGCCCTGGCTATGCCTTTCTTTACACTCCTCTAGGAAAGTCTATTTGCTGACTATTGTAAG----ATACCCAGTGCCA-GATCATTTTCTAAACCAACCACTCAGCCCCTGCAGGGACGTTCAGGAAAAAGACAATGCACCAGAGTTGGCGGCTGTGGGAGTAGGAAAGAGGCTTATGATTTGGACAGAACTTCAGTGCCCACTTCAGGAAGTGGAAGATTGCTGTACCGACCCACCCTCACCCTCCGTGTGTACATCCTTGTTCATATCTGAA-AATGGGAGTAGTTAACTCTGTGGCAACG------------------------------------TAAAAGTCCTTACCCCTCTGTCAGTTCATACTTAATAGGCAGGTGTGTTCCATT-TAGTTCCATTATTTATTGTTCTCTTGCTCCATTCAAAGG-----------------------AGGAGGAGGTGCCAAGGAGGAAGAAATGTGAGGC--AGAGTCCTGACCTCTATAAGTTCATAAGGAAGGA---AAAACTGACAAGCTGGTAATGAACCAAAGCCACAATGAAGC--AAGCATCTGAGGCCAGATCGAATTCATTCT-CAACTATCAAGTTGGTTCTTA-AAAGACCACAG-AAAGACACTTATGTGAGAAAAACCTGGTAAATTAATTAGATGGATTTTATGGAGAAGCTGAAGCTTAGGCAAAGGCTGCCAAGTTGGGAAATTCA-------CTCAGTTGAGAGAGAGGAAAGAGTGTGAAGAGGCCTACGTGAAGCCTGTGGAGCTAGGTAGAAAGGAATGCACTGGAATGTtccagaatcacctgggaagaaagacctagtgaaggttcgtctacagtggattggtctgtgagtataaggtaattgatgtgggaagacccagcccattgtgggcggcaatattcttaggcaggggttcctgattgtatagagt-tgagaagggggtgagcaaaactaaacatgcatgtatcctttgcctctccgctttg------------gctgtggctgtgatgtgaatgggtttctc-----aagctcctgcctgggttttatt------ctgt--------------gatttctccacagtgatggaacta-----ttaaccaga---------cactgggaactaaaactaagccctg----------cctcttttaagtgttattttccc-----------caag---atcttttattacagcaaccgaaaat--------aaactagaacaTGAAAT-----------------GGGATCTTGAAGGTTAAATCTCTTTAGCATCAGGGGGGAAAAATCTATATTTGAGCGATTCTTATTAGTAAAGTTTATATGTTTGAGTGATTCTTTATTAGTAA-AGTTTGTAGCTAGGAGACCGGAGTGCCATGATGGGTC--CCTTCAAGACAAAGCATTTTCTCTTCAGTCTAGGAGCGGGTAAGTAAGACAGGAAGCGTCTCACCATGAACTCCAAACAC--ATTTGAAAGAGGGAAGGAGTTCTTTCCTGAAAGAATGATGGTAGACAGAAGTCTGGGCCACTAAAAAGCACGTAAGAAGACAAATATGCTAAGGAGGTAAGGTAGGAGCTTGAAAGTGGGGC---TTTAGGCAGGAAGTTAAGACAGGACAGTGGCCTA-GTCTTGGCTGAAA------TGGATAGCAACAGATGGAGAAGTGAAGGACTAACTACTGTCCTATGAAGA
s HiC_scaffold_1 133709924 2444 + 233722169 TGTGTAAAATGTCCCAAATGAAGTGATAATactttgttttcaaagaaaaacctTTTACAAACAAACATGGCAAGGA------------TGTGGGGCGAAAGGAATGTCCAAACAATGATAGGGCATAGTACAATACAGGGTGCCAGGGAGCTTGAGGCCAAGAAAGACAATTTTAAGGTCTGGAATTGAAATTTCTCACTAATAAATTCTTTACCCCATGACAAAGGGTAGCTGCAAAC-AGCGAGCTCACAAACCCCTGGGAGCTTGTTCTGACACTGATAGCAAACTCAATCTTTCTGGGTCAGGCAGAGGTTCATCCCAAAATggaatccttttttctttctgtctgtggaTTCTGGTTGCTCCCTCGCCTTCCTGAGCTACTTTCTTTGCATGCATAAGTGAAATACCTGAA-GTAGGGGAGAAAAGCAGGCAGCCTCCTTCATGttgccaggctgagctcaaaaagggaagaaactttCTGAACCACTCACCAGCCTC----AGCAAATATTCTGATGCAGACAGCATCGTTATAAGAGGATAGTACA-----AGAAAAG-CCTGCCACATAGAGTCATGCCTCAAAATTTCCTGAAGAACTCCATACGTAACCTTTGAACAAGAACTGTA----AAAGTGGT-TAACAAATCTCTCCCG-TTAGTCCAGGGGATATGGCTTAAATCGGAATTGAGTAATGCAGATTCTTTGTGTAATTTGCAATGTTTA-----TTTCCCTCCT-CACACGC----CTTGTGTAGAAGCAGATTAACAGCTATGAATCATGGTTGTGTCTGCTATTTATATACG-AGGTGGTTTTCATTCCTGAAACAGAG--TTTGGAAAAGCAGCTTTGTTTCACCTGTCTGCATCTTAGGTTCTCtggttatgtttcttttctcatacCTTTGGGAAAGTTTGTTTAGTGAACACTGTAAGTAATATATTAATTGCTAGGGTGATATTACCCACCAACAGC-CAGCCCTGGAAGAGAGTTGCAGAATTAGCATAGTGAGCTGTAGTTGTTATCTGAAATAGTAAGGGAAAGGGAAGTTTTTTGAATAGGAATTCTGTTCTCACTCTGCAGATTGCAAAGCTACTGTGCATAT----------------TGTGTGCTTTATGGAGCCAATGTGAGCAATGGGAATCATTTCCTCTAAGGCAGTGTACTGGTCCTCTAAGCTCAGGAAATACCTGTTGCAATAAAAACTCTCATCCCTCAGTCAG-TCACAACCATTTGATGGGCACTCTTCACCATGGTTCAGTTATGTgttgagcacttactatatgcAAAGGTGAGCACTTACTATATGCAAAGCAATGAGAGGAGCTACAGAGAGGTAGCCGTGAAACAAAGAGTCTTAATCTTTGTTAGTTCATAAAGAAGGAGGGAAAACTGCCATACAGGCAGTTAGTGCAAGGCATGAGTATGCCTGAGTATCCTAACCCAACTCAATTTCATCCCACAAACATTTAGTCGATCTCTACAAGGAGTATGGAAAAGACAGT----------AAAATAGGAAATTTCCTTGGGTGGACTTCATGGAGGAGGAGAAGCTTTAGTAGA----------CTTGAGGACTCATGGGTGGCTGACCTGGAAGAGC-AAAAGAATATTCCAAGGGACAC------------------------AGGGTGGGCA---GAATCTGCCA-----AGCTGGGAGGAAAAAGTTGGGAGAGATG-------AGAAGGTAAGC-----AGTATGAGATTGAGGATGCATTGGAGCCAGGC------TGTGAGGATTCAGGCTAGAACAGGG---------CATATATAGCAGGAGATTGAGATGAGCAGGGC---ACATGGA-------------TCTCCACCATGAAATAATAGCCTGCTGCTTATATTATGTGGGAGGctttctttaagaaaattaatgcaaaagtataaatgtaaaactgtaggtatgaataaaaaattaataaaaaggagaaaaactaagTCCTTTACCAAATTATGAAACCCTTGAGGGTTCAGGTAAATCTCTGTCAAATGAAACCTCTTT---GAGCAATTTTACCATAAAAACCTACAAGGAAATCCTCTGTGACCGAAACCTAACTTCCATCTCCCCACCAGGACATAACGCATCCCTCCCACAAGCTGGGCATAGAGAAGG-----GCCCTATGGGCTTAGCAGCCCAATAAATTCACCTGTGCA------------GAAGTTTAGCAACCTTGCAGATTCTTTAGCAGTCATAGTTTGTGGCCA-GAGAATGGGGTGCTGTGATTAGTTTACCATCAATGCCAAATGCTTTCTCCTGTGTCTAGGAGAGGATGTTTCTGATAAGCAGCATCTTCCCTTCATCCCAaaacacaaaattggaatagGCAAACTATGATTTCCTACAAGAGAGGAGTTGGATGGAAGTCTGAGCTACCCAACAGTATG-----------ATATA----------AAAGAAGGGAGTGGAAAATGAAGAGAGTTTTGGTAGGAGGTTCAGTTAGGAGCACAGCCCACGTCTTAGGTAATACCGTTTTAGAT-GAACTGGGTGAAGAAATGATCAACCACAGGCAGATTTACGAAGA

a score=49855
s chr3           147032793 1524 + 160039680 aaatgaataa--ataaataaattaatgaaaagaa-----aaaaaaCATGACCCTTAGGCTTTTCACATCAATTCACAAATCCATAAAAACCCTCCAAATAGTCAAACTACAGGCATCATTTTAGTACAGGTCAAGCTACATGTGAGGAATATTTTATATCT-ACTTACTACTCTCAATAAGTACTATGGATTTTA-----------------TCCTTGTAAATACATGCCTACTTTTCAAGTCTCAAGGCAGAAGTTCTTGCTTCTTTT-CATTGACAGAGGTCCCTACATATGTTGTCTCTGCACATAGACATGGCAGAAGTTTACT-TCTTGGTTATTTAAGATGATCTCTTAGGACTGTTCTAGTCTATGTCTT-GTGATGGTAGCATTAtttttttcttttttagatttatttattgattatatgtaagtccactgtagctgtcttcagacaccccagaagagggcatcagttctcattacaggtggttgggagtcaccatgtggttactggggattttaactcaggaccttcagaagggcagtcaatgctcttacccactgagccatctcaccagccTTCTTCTGAGTAGCAGCCGGCTCAGCTTCCACATGTAACAACCTCTCACCAGGCCACGAAGCTT----------AAACTGGTTTTCCACCAAAAGTTAGCAGTAAACAACTGGCCTATAAAGTTTTCTAAGAGGCAAGGGAATGCCTACTCTGTTGCTGTAATTATTACTTCTCTCTTCATGGTGATCCTCGAGGAATAGAGTTACAAAGTGGAGATATCGCTTTCCTATTTTATCCCATCTGTTTATTTTTTTTTCCACAGTAAATTACCAG--CTCTGTTTGACATAGGAGTCAAACACTGCTGTGCCTCTTATCTGCAATTTTTGAAAATGCAGCAAAGCATGTACCCTTTAATTCCAAC-ATAATCAAGAACTGACTCTCC-TAAACTACATTCCATCTCTTCCCCTC----------------------------------------------TCCTG---------------GGCTGGCGGAATCTGGAGAGGTTTCAAGTTGTTGGAGAATGTGCTTACATCAACAAAATTGGCAACTTTATTTCTGCACAGGGGAAAAAGCAGAAAAATGGAAATTCTAGCGGGGTTAATGGG-ATTCTACCTGTGGCCAACTTGTTCTTGTGGTCTGTGATACTATGATTCAGAGGATGCTTAATTAGACAGTGTGCTCATACCAGCAGATGCAGTGATTCTAAAGGCTGGAGGGCAACTGGCTGCGAGTCTCATGTCATTCTATGGACCTTAAAACCTTTGCAACTGAAGGATGGGGAACTCTTCTCATCTGTGACCTTGCCTGGAAATATCAGTGAAGCCATTGTGCCTCAGGATGGCATTCAGTGGGACAAGCTTCTCTACCTGGGGAGTTGAAGAAATGGAGTAATTGATTGTACTCTGAATAGATTGTGA-----------GAGATGCTAATTCATTCACACATTAACAAACATCAACTCTCAGTTTTATTCAATATATACTTTTTTGGGTTGTGCTTCATGGCAGGTACCAATGTTACAGCTGGGACACTCAGAGCTAAGTCACATGTAGTC
s HiC_scaffold_1 133712337 1444 + 233722169 AAATGATCAACCACAGGCAGATTTACGAAGATGACGCTAGGCAAAGGTGATTTTTACAGTCTTAATTGCCATTAGTGAGTCCAGGATAGCCC-ACAGATAAGCAAATACCAAGTGCTCTTTTGGTATAGACACAGCTAT-TGTGAGTGCTAATTCATTTCCCATGCAGTGCCCTCAGATTGCGCCATGCAACCtagctctgatttatttcagtccCCACAAATATATGCTCACTCACCAATTCTCAGGATAGAGATTcttgcctctttttcttttacaaggGTCACCACACATATTGTCCCTGTACATAGAGGTGGCAGAAAGCTACTGCCTTGATTACTCAAAATGATCTCCTAAGGCAATTTTGGTCTCTGTCTTTGCAATGGTAACATCATT------------------ATTTCTTGAATA---------------------------------CCAG---------------------------------------------------------------------------------------------------------------TCTCTGGCCTCCTCATAAGGAGCAGTCAGGTCAGCTTCCATATGTAATGGCTCCCACTCAGGCCATAAAGCTTTGATATACTTAAACTAGTCTTTCACCAAAAGTTAGCAGTAAACAACTGGCCTATAAAGCTTTCCAAGAGGCAAGAGAAAACTGGCTCCATTGCTATAATTATTACTTCTCTCTTCATGATGACCCTTGAGGAATatagttaaaaagcagagattcCACTTTGCTATTTCTCTCCATCTGTTTATTTTG-----CACAGTAAGTTGCCAATTTTTTGTTTGACATAGGAGTAAAACACTACTGGTCCCCTTATCTGTGATTTTGGTAAATGCAGCGAAGCATATACCCTCTAATTCCCACAATAATCAAGAATTTACTTTTTACAAAGCAtattctctctctgcttctcttactgtgtctctctgtatctgattctgtctctgtctctctgtctgtcctgCATTCCCCGACACACAGCTGTTGGTATTTGGAGGAGATTCAAGTTGTTTGCGAATGTGCTTGCATCAATGAAATTGGCAA-TTTATTTTTgcacagaggaaagaa-agagatatGGAAATTTCAGTGAGGTCAATGGGAAACCTACCTGTAGCAGACATGTTCTCCTGGCCTGTGACGTTATTCCTCAAAGAATGCTCAATTAGGCAACACTTTCATACCAACAGATGCCATGATTCTAAAGGCAATAGGACAATTGGCTAGGGTTGTGGTGTCATTTtac-aacattaaaacctttgcAACTGAGGGAAATGGAGCTTTTCTCAT-------------------TATTTGTGAC-CCAGTTTGCCTCAGAATGGCACTGAGTGGGGCAAGCTTCTTTCCCAGGGGAATTTAGGAAATGGAATATTTGATTGTGCTTTGAGTAG-TTATGCACTCAGAAAGTGAGATGCTAATTAATTCACACATCTGCAGCCATCGGTTTC--ATTTTATTCAACATATACTTGTTTAGCATGCCCTTTGTGCTGAGTACCACATTTAAGGTATGAATACCCAAAGCTGAATAAAATGCGGCC

a score=21557
s chr3           147035976 886 + 160039680 ACAATATTTTTAGTTTACAACTTTGTCACAATTGACTTGCAAATTGTCTAGCAAACTGCAAACTGCAAAGTAGATTTGTTGGCTTCTAGTCAGTCCAATATATCTGTGCCCAACATTGTCTTTAGTACATTTGTGCGTCCAGCTTAGAGTCTTTAAAAAGCTTTATAGTGGCAACATTGATTTTAGTTCCTTTCTGTTTCTAACTTAAAGAGTTGAGAAAAAAAAACACTTTATAAGAAGGCAGACTTCCATATGCACATGCCATTTGGCAGGAAAGTGGCAGA-GATGGCTGCAGGTAAGATATTACAATAGAGTAGGGACAT---TTACTCTTCCCGTTCCTCACAGTGTGTGGGCTGGATGGAGTGGGGGACTGGGTGCTTCTCA-------------GAGATTGCTTTTGCTGTTCATCTGGAGGGATTTTGCCTCTCTCTG-TGCTTCTAGTTCCTTTATGTAAAAAT--GTCA----------------CCACACACACACACATTCTCAG-ATCAACTTGCTATGTAGGGCAGGAAACCAAAACCCTCATTTACTTAGGTCAATTTTCATGGCAGACAAGCAAA----ACTGCTTGTAAGAATCATCTAACACATGACGAAAAGCTCTCCTTACCTCTGTGAGGAAGTTAAAGATGATTTATTATC-----ATATATTCATTGGTCTTTATCTCTTCGAGTGTCTGAGCTAGACCCCAAAGTAAAAGAATCATCCCAGTTGTGTTGATCAACGAGACCAGTTATTCTTTGGTCACTATACATTGGTTAAGCAACTTGTTAGGCCTCACACTGGGACCTAGGGTAACAAAGATGGATTAGGTCTACTTAACAGTCATTGAATTATTCACAGTCTAGTAAGATAATTCATGTA-GCTGTAGTTCTTTGTGAGCTCCTCTAGTCTTCCT
s HiC_scaffold_1 133714736 838 + 233722169 ATAATTTACTCAGCTTACAACTTTCCAGAGGTTGACTTGCAAAT-GACTAGCAAGATGCCAATTCTAA--TAG-TTTGTTGGATTCCATCCTTGCAAATATTTCTCTGCCCAACATTGT-------------------------------------------------------------TTGcaatttgtttctaattttaactttaaggttTTTAGAAA-------CTGTGCAA-AAGGCAGGCTTCCATTTGAGCACAGCAT----------------AGATGTTGATTGCTGATGAAATAATGTGgcagaatgagaaaatattttgttttatccagTCCTCACAATACTCGTG-TggttggtgtgagaaactaaatgtTTCTCACTGTTTAACAGAAAAGGTTGTTTTCATCATTCAGCTGGAGGAGGTTTACCTTTCTCTGATTCTTCT--TCCCATAATGTGAAAATACGTCATGTTCTTTCAACACTGCCATGTGCAAACACACATTTAGCACCAGCTTA--ATGGAGGATGTGGGACACAGAACCCAATTTACTTTGATCAATCTTCATGTCAGATGAGTGAGGGTTACTTCTTTTAATCATCTCTTAATATGTCAGGAAAGATCCTCTGGGCTACATATAGGTGGTTACCgatgatttattatttaaatagagagtcttttttctttatttcccgGTGTGCCTGAGCCACACCTTAAAATACAAGAGTGATCACAGATCTGTTGATCAATGACACCAGTCATTCCCTGGCCACAAGACATTTGCTGAGCAACTCATTAGGCCTCACATGGGGACCAGGAATAACAAAGATGGATTAACTCCAGCT-ATACTCTTTGCATTTTTCAAAGTCTTGTAAGATAATTCGCGTATGTTGAAGTTCACCTCGAACTTGTACGTTCTTCCT

a score=14145
s chr3           147037291 419 + 160039680 TTGTTTGGAAGACTACCATTTATCACCGTTCAGGTTCCC-------CATTTATTGCATAGCTTCTGTGCTCTACTCCCT---------AGCCTTAGACTTTAACAGAGGAGGTATTTTCTGTTGCT-TCCAGGACCCCAGGAATTCTCCTTCTAGAAAGAATGGATAGAAAATCTCTCTTTCCATATAAACATA--CAGCAATAAATAATACATCAAATCCCAATAGAATCACTAC--CGGCCGCTTATCATTTTAGGATGGCTAACGTGTTATTAATTAGCAAAAGACATGCTTGATATAACATTCCCAGCAATGTGCCCTTTTCTTTTTCTGGCTAAGTGTTTATGTAAAATGCTTTGTTTTTATGGTTAAAAATCTTATAATCACATTCTCTTCATGATCACAAAATACCATTTGGCTT--AAAGAGCTGATGTTTTCT
s HiC_scaffold_1 133715639 431 + 233722169 TTGTTTAGGAGGCTGACCTTCAGCTCCTTCTAGACTTCCTTTTGTCCATTTGCTGCACAGTTCTTACGCT--AGTCCCTGGGTCCGGGAGCCCTAAACCATTACAGGTTAGACATTTCCTGTTCCTGTTTTGGTCTTGCAGCATTCGCCCCTGGGAGAAGTCATTGAGAAGATTCTCATTTCTATGTAAACATAAACATCAGTA--TCATACATCAAATCCCAATAAAATCACTACACTGAGTACTTATTATTTAAGGATGACT-----GGTGTTAATTTGTAAAAGATACGTTTAATGTC-CATTCCCAGAAAAGTGCTCTATTCTCCATCTAGCTAAGTGTTTATGCATATGGGTTTGCTTTTATGGTTAAAAATCTTATAATCACATTATTTTCATGCT-AAACAATagcattcagttttaaaaaacctaatgcttttt

a score=61753
s chr3           147045409 3160 + 160039680 TCAGATGGTTTAGGGAAAACACTTCTTTGTGTGGCACTGCAGTAGCTTTGAGAGGTTTTTCCTTATACA-----------GATATTTGATTTTTAAGGTAACAAGACTGAGAAATACTGGT-CCTTTAAGAGGGATTGGTGCTTTTTTGTTTTTCTTTTTGAAAGACTGAAGTCTTACTTTCACAGTACTTGAGTTGGTTTCTATAGAAATGGGTTTT--------GCTAAGTGAACTTCAC----ACTTCCCATGGCCTTAC------------ACATGCATCTCACTTAACATTTAAGTTTTTCTGTGAtgagctgaacacaatgaggtgg--------agagacaaag----------------------agagaaacaga--------gagag----------------acagag-----agacagagacaca-cagagagacagag-agaaacagagagagacagagatacatagacaca--------cagagagacagaa------------acagagaggcacatagagatacagaaaggcagagacagagatatag--tatgaataagtagagaaagaaaCATTGAATGATCCTCA--AGTCCATCATGTTGAAGTCTTTGTAACCAGCTTTTACTATAGCCC-----TGGTCAAATATCGGGGTGAATG------TATAaa-----gttagattgttgtg--catcctcctaaatggggtactgggctcctctgtgctctccttttctc-ctccccacctcttgcttg-tagcaatcataaagtaaacaatcctctttcatcacatgccccatcaaggacctaccatgctgatccaggcgccatacaaagggccaagcaactatgaactgaaaccac-ggaactgtgagcctacattagctacttcttatttgaggttgacttgcaggaggtgttctttatagaaccagaaaCCAAACTAACACAA--ATCATCTGCAATCATG-ACGGAGAAAGCATTTGTAGAAAACACAACCCTAGGGGA-TTGCCTAAAACAGCTC----TCCGTGAACAGCTGCTTCTGGAACCTTAGATCTGAG----GTCTAGGCCTGGTGTTGTACGTTTGCAACGAAGTGTCCTCAGCTGAAGCTCCTGCTTTCCCTGGGTGTCTGTTTCTTCATAGGCAGAGTGGA-AGTTGATATCCGTATCTTTCTGCTCTGAAATTCAACCCTGTGGTTTCATT--GTAACCTATTATAGCTCAACCAACAGCTCTGAGGGgttgttgttgttgttgttgtttgttgttgttgttTACAAAGTTCTTTGCATCTACCAGCCCCAGGGAATTCTTTGACTAATGTAT-----CCCAGTTTGGCAGCTAGGCCACTGTGTCTCCATTTAATCCACCTCAGGCAGCCAGGATTAGTGTTTCTGATGCACTGAGCTCTGGAAAGGGAGCAGACCCTGGCTTAACAGTTAGAGATAAATCCATGTTCTCTTCTGTCCTGTCTAATTCCAGCAGCAGGAGTTGATGCTCACTTGGGAACTTGCCACAGAGAACATTCCCTTGGAGGGCCTCCAAATGTTAATTCTGGGGATGATGGCAGTTCCAGGAGGGGCTGAGCCAGATGGGCAAGACTGGACATTCACAGGCGTCTCATCTCGCCACACTAAGGCCTGTCTGAGTTTTAGAACACACCAAGAAACACTAAGCAAATTCCACAAAAATATGGACCAACCACACATAAAAATAGTCACTGCAATTGACATTTAGCCAATGGAAATTTATGTACCATGGTGGGCTGAAAAATCCTCTCTGTTTAATAATAACCAGATACAAGAGAATGAAAACAGGATGCAAGGCTACTGAAAAAT-AAAGACAGGGACCTGTGTGTTGGATACG-----TTATGTAGTGTCAGCTTTTA-GTACCAAATGCAACAGATTTTATGAATCATTTAATTGAGGTATTTTCTACCAGTTGTTTATTATAAGAATCGGTAGTGATATTATATGATTAAAAAGAACACCAACAGTAATTA-GGGTCCCTTTGCCCAATTACC--AAagagcctgacacataatttatgctcaataaatacttgtagaatgaaGTCGTGAAAGAATACATTCTCCTGTGACTATTATTTTCATGGAGGTAGACTTAGGCAGCTATTTTTAAAAAATGTAAAATTTGGGTTTTCTGTAGAATTCTAAACCAGATGGAGATCAAATAAGAATTTATTAAACCTAATAATAAAAATTTCAAGTGAAATAAAACATGC--ATTGAGAGATCATTTTATTTCCAGTGAGAATTCTGTTTCCCTTTTTATTTTTTTAGGTATAAGATAGGAGTGCATGAAtgtgtgtgtgcatgtgtgtatgtgtgtgtatacacatacacacatgcacacacatacacatacatacatatgcacatatactcatacacacatgcactcacacatacacacataccacacacacatgccacacacacatgcacacacatacatgtgtgttttgcatatgtgtgagcatatgtgtatatgtctatgtgtgtgcatgtatgtgtgtgattgtgtgCATGTGTATGTGTGAGTCTTCCTTATTCCTTCATATCCACTGCCCCAATCCAGCAGGTAAGAGCACCATAAATTGGAATGATGTTCCCTTATGTGCCTACTGAGATTTCTCCACTACAGCTCAATGCTGCTACGGGAATGATGGCTTCCTTATAAAGCCTGGGTAATGAATAGCCCCAGATTTATTTTCACATTTATTTAGGACAATCTCCTCACTGTCACTGTGCCAACCTCACCAGCACAACTTGATGCAGCATATAAAAAGCACAAGCTTTGGAGAAAGCGAAGAAAATGCCTGGCCTGCAATATTTGCTTTGTCATTCATCAATCTCA-GCCCTAAGACAGTTTTTGAGCATATCTGA-ATCTCCTTCTTTAGTTTTGGTGGTTGTCCTAGTGAAAGAAAAGCAGGTATTTGCCATACTAATTATCTGACACTTAGTAGGTC-TAAAAGTTAATTGCCTTTTAGCTAATCTTCTGTGGGCCTTTTAATTTTCATTCATTTGAATGTTCTTGCTTG-TCTCAACTCTTTCCTGGTTTCTCATCACTTCTCACTCTCACCTCCAGCAAATCAAACG-CCAGCTCCCTGTGCAGATGAATCAT-----TTTTAC---AGGTCTGTATCTCTTTGCTGATGATATGAGGAAGGCAAAAGTTTCGGATTCTTTGAGTAACCCTACGGTGCCTTCTGCCAGAACAGAAGTCTCCATTTGTTTCCTGATGACATCAGTA----ATGTCtaatgcttaagcttgctt
s HiC_scaffold_1 133735761 2916 + 233722169 TCAAATCCTTTAGGATAAGCAGTTCTTTGTGGTGAATTGTTATAGcttgaatatgtttttttttcctcactagAACAACTGAAATTTAGTTCCCAAA-TAATGGTGTTGAGAGGTGTTGGGGTATTTAAGAGGAATTAATGCTTTTTT-----------CACATGATTGAGTTCTTGCTCTC-------CTGAGCTGGTTTCTGCAAGAGTGAGTTTTTAAAGGCAACCTGGTGGTATCCACCTTGATTTCTCTTGCCCACATGTCCACATGTCTACATGtactccatttctctttttaatattgCTGCTATAAGATGAACCTCAGTATGAGGCCCTCACTAGAAGCTAAGTATGTACTTGCACCATGCTCttagacttccagaactgtgttGTGAATAAATATGTTTTCCTTACAGTGTTCCCAGCCTCAGTTACAGTATTTTggcagagcaaaaaaaaaaaaaaattaagacatgtatgcacatttttttccataaatgtgagattatttttttttaaagaagagggAATAGAAGCTCCTATGGATAAGCCTGCACATGCTGCTTGTGGAAATGCCAAGGTTTGAATCTTGAATGACTCCCAGAAGTCCCT-ATGTTACAGGCTTTATGAACAGCCCATGGTGATACTGGGAGGTAGTCAAACCTTCAGG-GAGTGGGGCCTCATGAAAGGACGTTAGCTCACTGAGGACGTACCCTTAAAGAGGATTTTGG------------------TGTCTCACTCCCAGCCTTTTGCTTCCTGGTTTCCACGAGGTAATAGGCCTGCCTTC-TCTAATGCTTCTGCAAG----------------CCTGAAGCAATA----GGAATAAGAGACTagtgactgaaacctctgaaaccatcaGCCGAAATAAGTCTTTCCTTCTTGGAGGCTG-TTTCCCGCAGGCATTTATTTCACTAACAGAAGACTGTCTAACCCAAGGAACTTTTCTAATAGTCCATTGAGAATATCACTGTGGAAAATACAGCATCAGGGGAGTTGTCTACAATGGCCCAAGTGTTATGGGTGG-----TCTGGGATTCTAGGTGTGGGTTGAGGAGAGGCTAGGCTTTACAATTGAACAATGGAATGTCT--AGTTAAAGCACCT-CTTTCTCTTGATGgctatttcctcatctataaaatgaagagtCAGTGTAGCTCTCTTCCAACTGT-AAATTCAGCACCGTGATTTCATCTCATAGTACATTGCAGCTCA-CCtccagtt--------tttttgtttatttgcttgtttgcaTTTTTTG---GAAAAGTTCTCTGCATCTCTCTGGCCCAAGGAGGACTCTGACTAATGTGGTACTGCCTGGTTTGGCAGGTTG--------------ATTTAACTCTCCTCAGGCAGGCAGGATTAGTGTTTCTGGTGCACAGAGCTTTGGGAAAAGAGAACACCCTGGTCTAATAGTTCAAAATATATCCATGTTCTCTTCTGTCCTGAACAATTCCAGCAGTATGACTTGA-GCTCCATTGGAAACTTGCCACAGAGTATATCCCCTTGGAAGGTCTCCAAATGCTAATTCTACAGATGATGGTGGAG-CAGTGGGAGACGAGCCAGCTGAGCAAAACTGGACCATGATGGGATTCTCATCTCTCCACACCCAGACCCGTTTGAGTTTCACAGCACATCAAGAG--CTTCAGCAACCTCCACACACGTATACATCAGCCCTTC----------------CGCTTCACATTTAGCCCAGGGAAA------TATTATAGTGTTCTGAAAA---CTTTCTGTTTAATAATAACCAG--ACTTGAGAATGAAAGCAAGACATAAGACTACTgaaaaatgaaaggcaaagaCCTCT------AACACATATTTTCATGTAGTGTAAATTTCAGTGTTCCAAAGGCAGTAAGATTTGCA-------TAATTGGGTGACTTTCTGGGCTGTATTTGCTGTTATAA--GTCAGTAATATTATTAGTTTAGAAAGAACATCAACAGGATTtacagatttctcttcacaattACCATATAGAGCCTGGCATATAACTGATACTCAA-AAATACTCCCTGAATGAAGGTGTAAAAGTATACATTCACCTGTTAGTATGATACTCAGGGAGGTGGcctgag-----tattaaaaaataatatacaattttGGTTTGCTACAGAATTCTAACCCAGATGGAGGTTAACTAAGAATTGGTTAAAACTGATAA-ATGTTTCTCAAATGAGAGAGAGTATGCTATCTGAAAGGGCCTTTT-----CTGTAAgaattttgtttccctttttattttttcagttccaG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGATAGCTTTGAG-------------------------------------Gagaatttccttttttgctt-------------ccCATCTGGCAGGAAAGGGCACCATAAAGTAGAATGATGCTTCCTTATGTGTGCACTGAGATTTTTCTCATGCAGCTCAACTCTGCCACCACGATGATGGCTTGCTTATAAAGCTTGGGTAATGAATAGCCCaagatttattttcacatttatttaggaCAATCTTCTTGCTGTCACAGTGCCAACACCATCAGCACAACTTGATGTTGCATAAAAAATGCATAAGCTTTGGAGAATGAGAAAGAA--GCTTGGGCTTCATGGTCTGCTCTGTCACTCATCAATTGCATGACCTTGGGCAGTTATTGAACATATTTGAGACTTCATTTGCTAATCAGGGTTGTTTTCC-AGTTCAACAAGATAA--TACTTG-CATAGTGCT----TGACATCTAGTGGGCCTTAAATGTTTATTCCCTCTTAGTGAATTTTTTGGGGCcagtattccttttatttacctCAGCTCACTCATTTGCTGACaaccctttccttttttcttttctcttctgacTCTAACTT----TGAAGCAAACATTCAGGTTACTACGC--GTAAATTATGCTGCTTTCACTGGTGGTTTTGGTCTCCTTGCTGATCTCCCAGGGAAAGTGAA---TCTGGGTTTTTAGAGTTACCTTCATCTGCCTCCTGTTA--------------CTTGGTCCCATGatgatattaataaaatatgtataatttttaggtTCAATT

a score=19192
s chr3           147049270 906 + 160039680 GCATCATCCCTTTTTGTCTTTTAA--TCAGTTTTGTGCTCCTAACACATGCACATTTGAGACAATTT--TGTTTGTGTAAAATCCTTATCTTC--CTAGAATGAGGGGAGTCTGTTTCCTTCATTGAAAGCATCTCCAGTGAGTTC--TAGGAATGG-CTCAGAAGAATCTCTCAGA-AATGCTGATGGAACGGAGCATCACTGATGGATA-------CTCTGAGGTCACTGCACAGTTTGGTAAGGAAAGGGCTGGGAAACCACTGTCTCCAGAAGATGCTGAGACGCTTTGTCTCTAT-CCAAAAACAGAAACA---ATGGGGTAACCGTTTTCAGTTTATTATTGAACATTATGATGCCT----CAGTAGGAACTTACAAATTGTTTGTGATCATCCA-GAACTGATCATTTTATCACTTTGATTTATAGGAAAATGGGTAATACTTTGATATGAGGCTATTACATAGGAAATGTG-------CAGTTTTAAAAAAAGTACTCTACAGTAATAGCTCCCTCTGAAAAATCACACTTTTAGGAATGGATAGATATAGATTGTGATCCCACCAGAGACACTC---AAATATCAGATCTTTCCCTGAAGCA-TGCTCTCACACTCTACTGTGGCTCCACTCTCCCAGGAAACAGAAACAAAGCCTCCCACAATGTAGGCTTGAGATACAGGAACCTGAACGAT-----CAAATTGTTCTGCTCATATCTACACTGCCCCCCAAAAT-----------AGGTAGGTCCgctccaattttcttatcctttaaattggaatcgtgatagtacatacatcatagA-ACCTGGGGTCTGAGCAACTAA--AAATAATAAATAATGTGATTACCATAAAGCCATTGTTAGACAATTATTAACATAAAAATGGGGCTCTGGATACCAAGAACTGAAGGAA-GCAGCCCTCACACACTAAAAAATtgtctt
s HiC_scaffold_1 133740321 911 + 233722169 GCACCAcacctattt-tcttttaaaatctgctttgTGTTT-------GTGCACATATCAACTCATCTGTTATTTGCTTGaagcctttctctttttctgcagTCTGGGAACTTGGCCTCCTTCTCTGGCA-TATCTACAATGAGTGGAGTAGGACTTGTCCCAGAGAAGACACCCAGGGAATGGTGACTGGATGGAAGA-CACTTTAGGCTAAGAATGTCCTTGAAGTTATTATGTAGTTTGGTAACAAAAGAGCGGTGAAACCACTTTTGCTGGAAGACATTGAGATACTGTATCTCCataacaagaacaagaacagcGATGCGATAAC----TTCAAT---TTATTGAACATTACGATTCCTTGCACTGTAGGAATCTATAAGTTGTTTGGGATCACTCATGAACTGATAATTTTATCACTTTAGTCTAT-GAAAAATGTGCAGTGGTTGGTTATAAGGTTATTACAAAGGGAATGTGTTAAATTCCTATCTAAAGATAATACACTAC-----------------AAAAACTACACTCTCAACTATTGATATACACAGAAGATGGTGTCACAAGAGCCCCTTTTACAGTTTTACTACTTTCCCTGACACACCACCAGCACATCCCTTTACCCTCCTATCCTCCCAGAAAATGAATCCTAA----CCCAGAGCTTTGGGTTGAGAGTTCAGAGTTTGAAAGATAGATCCAGACAGCTCTCGTCACATCT---CTGTGGCCTGGAATCAGTTTAATTAAAGTctctctgcttcagtttcctcatattTTAagtaggaataataataatatctataTTGTAGATATGTACAATATGAGGAATCAATCAAATAATATATAGTACGATTGCCTTGAAATCATCACTCAAAAATTGTTagaataaaaaggagg----------aaaaaacttAAGAAAGGCAGTTCTTGCCTTCACAAAAATATTCCT

a score=43911
s chr3           147053460 2334 + 160039680 TTGTTCTCATAGCTTTTGCTATATGCAGCTACCTGACTTT----------GTTCTCTGCTTCTGGATG-----AGACTTGAAGACTTTCTTTGTGATATGATG-ATTATGTTCCCTCCATTACTTTAGTTTAGATGTTAGGACAGTTTGCATAAGCTGCTTAGTAAAACAACTGTTGTTGTCT-CTTAAGTTGTATGAGAGGAGTGCTCTCGGGT-CTTGCTTAGGGAATGGT-------------CAGGTCAGATGTGAGCTGAACTCCTGTGGA--------AGCCCCACACATGGAGATGT-------TAAGAACTCATGTCTCTTCCTTACGCCTTAGCCATTTTATAGCTTGACTCGTCTTTCCTTTAGTTATGATCTCTATCAGGTGTGTGC-----TGTCCTTACCCAGTAA-----GCACAATTATTACTACTGCTTTTTGTGGAGCACTGGATTTTGTTTGGAGGAATAAATAAATGGATTAATTCATTTGTGTGAGTGCTTATacacacacacacacacacacatacacacacGTATATGATAAACATACATATGCAAATCTTACTATTTCACTGAAAGTTCTCAGTGTCGAAATCAGAAATATAATATAGCTTGGCAGGTGGCGTAGCCCCTCATCCCTGGCTATGCAGGAGGCTCATGCATAGTGTGCCTTGACCCTAGAAACTCCAGATCATGTACACATGTGTGAGAAAGTGCACATTTGAAGTTGGGACTTCCAAAAG--AGTAAGTGGATCCATGAGCATACCTCTGAAATAATCTCATCTTAACTGCTGGAGGTAGAAATTCCTCAGAAATGA-CTTTTTCCCCTCTAGA-TAAATTTTATA--GTTGCACAGGAAGTGTCCCAGCTGAGCTCTGCAGTCGCCAT-----GCATGTGTG-----------GTGAAAGAGAGAGAG---GGGCAGGAGTGAGTGATTAAGAAGCTGATATTGGTCCAACGGAAACCATTTCTTATTTCTTGACTATCCTGGCTGCTCACAGTAAAATATGCTTCCCTAAATTGCACATCAGTTGTTTGCAGAGTTGGAGGTGGAAGGCCTAAGCTGCGGtttctttctttcttttgctttcttttctttctttattttttctagtagaaaactaggaaatgagtcataaaacattaataccgccttaaaataacctaggggagggtgatcgcaagatgaaccttagtacagcACCGGGGGAG-GCTGCACCTCCAGAGGAGAAATTTCATTAGTGAGGACTTGCCCTTCACCATAGAGAGCCCCGGGTTGCCTTCTTGAGGCT--------GGGAGGGCTGGGTCGTGCTGACTGGGGATCTTGGCTGATTTAGCCATCTCTGCAGCTCTTCTCAGAACTggaaagaagtgaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggcaggCCCCTACTTTGCACAGGAG-------------CATTCTGACACATCAGTTGGGGCC-----------GTTCCCAGGTCCCCGAAACCTCCCCTGATTTAGGAGTTCATTAATTCAGACACGTGGAAACGTAGGTGGAGGCAGGTAGAAGGGATGAACAGGGTTTAAATACCagcaagacctctgccgtcaga--cagaccaggattatgatatcgtctttattaaccgtgaccatgagcatttatttatcaacttccaaggagttgccccctccttgtctgcaaaactaggatgaagaacatctgattctaacgtcattttcagaattaaatgagatgaGTACACAGTAACCCATGACT-AAATATAAAGTCTTCTTCTCTATTCTTAAATTACTTTAAATTCTCATCTCACCTACTGTAAAAACAAACAAACAAAAAGCTCTAGTTTTCTGTTGGATTCATCTTCTCC-AGTTATTTCTGAGACGATCAATAGAAATACTTTCATGTTCCTCCTGTTAACCCTGGTTGTCATT-CCACTGAGTGATTTCTGCTCCAGAAAA-CGGGTCTAACCTCATGATATGAGACAGTAATGTGC--TGGCCTGGAATTAGAATGAAGCCACAGCTGGCTTATACATTTCCTCTAGAAGGAGCT---TCTACTAGA---------------------GGAGAAGgcctttgagtaaactagaaaacagtgtttt-------ccagggagacttggccccttatcaagacccatggcttgttgagagtaacagcacaagctagatttcatttttagccttctatt--tcagctatgtg-ttttgaacagtaaaaacagcacaactCTGGAC---AATAATTC-AGATATTCCCTGAACATATACAACAAAAGACACCCTACAGCAACTATAGCATGAGCAAACCAG-AATTTCTTTCCAGCTCATGTGCAAGAAGATATGCTTTCTGGTTTCGATCTGACCACAGGTCAGATCTG----ACCCTAGAT------CTTTCTGTCCCACAATC
s HiC_scaffold_1 133741300 2151 + 233722169 TTGTTCTCATAGCTCTCAC-ATGGGTCCCTCCCTGACTTCAGCACCTTCAGGTCTCCACCTTCGGGTGCAGTGAGTCTCCAGGATTTGCTTTGGCATaccatttgctttgtttcattgtttg-tttgcttttgattttagGATAATTTGCACCAACTGCTTTGCAGAAAaacctttctctccttcctgaaTAGTTTGAGAGAAGAAATCCCAGGCACTAGGCTGGGGAATGACAGTTTCCTGGGCATGGGTCAGATGTGAACAGAGCTCCTGGAGACAGACTTAGGTGTCACTCAGGGAGAGATGGTAACATAAGAGCTCAGGTCCCTCGCTTAATCTTTGGCCACTTCACAATTTGGCTCTTCTTTTCTTTAGTTATGCTCCTTATTAATAGCGTGCATCACTGACTGGACCTAATGATATGGATACTtttattagtatttcttttagtg-agcataagtttttatttagaggaagaaata--------------------------tttattgtctcacatggttacacatata---------------------tatatgtgcacatctGA----------------------------------------------------------------------------GGCTGggaa-----------------------tgatccaaaaaa-----------------------------------------------aacttccaaaaagaaggaagagagtaCAAGGGTGCATCCCTAAAATAATCTTGAGTCAACTTTTTGAGTCAAAAATCATCCAAACATAATCTTTTGTCTCTCTAGAGTAAATGTTATATAGTTACATAGGAAACGTCTGTACAGAGTTCTACATACACCAtagtgagtatgtgtgtgtggctGGGGGTGGAGGAGGGAGCTCCTGGATATGGGTTGATGATCAAGA--CAGACACTGAAACAActgaaataatttcttatttcttgtgTGTCCTC-CTACTCACAATAAAATATGCTTTTCCAAATTACATCTCAGCTGTTTGCAGTATCTCAGGCAGAATGCCTGGGCTGTG--------------------------TCTCCCCAGCCCTACCCCAGCAGGAAACTAGGAAATGAGTCATAAAACATTAATACTACCTTAAAATAACTTAGGGTTGGGCAATCCCAAGATGACTCTCAGTTGAGCACCAGAGGAAAGCTGCACCTCCAGAGGAGAAATTTCATTACAGAGGACTTGCCCTTTCCCACAGAGAGTCTGGGGCTGACCTCTTGAAGCTAGAGGGGGAGGGGGGCTGTGTCATGTTAAGTGGGGATCCTGGCTGTCTTACACAGCTC-----CTGTCCTCTGCAATAGGAATGACTGAAAAAGCAAGGTA---------------------------------------ATGTCCCTGTGCTACCCCAAAGCATTCAAATATATCATTCAAACACATTAGCCGGGCCCATTTTGTGgtgatttttaagttttcatgAGCTCGCTAAACTTAAGACTTCATTAATTTGGACACATGA----GCAGGTGTAAATACAT------------TAGTGGTCGAATGCA----------CAGCTGTGAGAATCAGACCTGGGTTAGAATCCTGAATTTCTTAGCTGTGACCTTAAACA---AGTTATTAGCTTCC------------------CTTCGGTAAAACTGGGAC----AAGACCTAATTATACTGTAGCTTTGAGAATTAAATGATATGAACGTATAGCAGTCcatgattaaaaaacaaagttgcattttctctttt-------atgtaaGCCCTCATCTTACTGATTATAAGGA---------------ATCTAATTTTCTGTTGGATCCTTCTTCTCCAAGTAATTTCTgggaaaatcagagaaaatacaTACAC-TTCCACAAGTTAAGTGTGGTCATCATTGTTCCTGAGAGTAATGTGATCCTCAAAATCTTGTTTGACCTCATGACATTGTATAGCTCCTTCCTTTGGGCTTGAATTAGGATGAAATCACAGCTAATGTATATGTGTGAATAAGCAGAAGTTGTGTCTTCCAGATAGGGACAGGTCTTGATAATCAGACTAGGCCTTAGAATGAGTTTGGGCAGGATATCTTCTTTCTCCCAGGCAGACTCAGTCATATGTCATGATCCATGGTTTGTTGAGGA---------GAGGTTGAGTTCAGCCTCATCCCACTGTTACTCAGCTGTTCGCTTTTGGGCAATAAAAACATTATGACTGTTTGCCTTCATAACCCTGGGTTGTCATTGGTTGCATGTAACTTAAA--ACCAAAAATCGACACCtgcataaacaaaacagaaacttatGTCTTGCTTGCCTAAAAGGAGATAAGCCTTCCAGGTTTGATGTGATCGCTCATGGCATTAGTAGAGTGCTAGATTCCTGGCTTTCTGTTCCACTATC

a score=51852
s chr3           147060091 2653 + 160039680 tgaattcttctatagtcctcctctgacaatgtagaaaccaattctcctttccttgagtgagagccatactcggagaatcaattttaacat-tagaatgttctggaaataaaaatacgtgacttcttagctttggccacagggagatttgtgtct-cttctctgctctcA---------------AGGAATCTGGCTGCCATTTT---GCAACATGTGTCCCATGTGTCAAGG--------CTTCTTAGCAAAAGACAAAGAGGAGGGCTTTCCTGAGTCA---------GCCGTCCCTAACAGAGAC----CCGTCCCATGCTCCAAGCAGCTGACACTTGAAGTCCAATTCATCAGCTCCAGCATGTCCCCGGAATAAACCCccatccagtaagccactcccacaatcctgac-tgcggagact--gacctaagaaatgattattgtttcacgataaactttgggggaggggcaatttagtcacacagtgacaggcagctagca-------caATGTCATTTTTTTGGTTTATCAATCTTTACTTC-TCTCCTTTGTCCTC----TCCTTTTCGTCGCTCTGTAGGTCCAATGAAAAGCGAGTCACCATGGCTCCCTACAGTTTTAACTGTACAGTGGAGACACTGAATGGTATAGAAACGACTAGCAACACCAACTGTGGGGCCGAATTATCCCTGCTCGAATCC------TCTCTGT-----------GCAGCGTAGG---------------------------------------------------------ATGTGCCATTTTC----------CTTGGGCTTAGTTTTTCTCCACTG---------TCCCAG----------GAACAGGGTGGCATCACATGGG-TCACTGTGAAGACTAAATGAGGAACTGTGTACATGAGGACTGACAGAGTGTTTGCTCCACAGTTCGTGTTGCAAAAGAGAAAGCTAAATCACTACACCACAGGACTAACGGCAGCCACTTCTAACGA-------------TGCCAGCTGCACCGTGTTTAT----TCACCTTCCTATTCTTCATAGCAGGTTATCTTGACA-------TTTTCCCATTATAAATAAAACAGTGATAAATATAATTGACCAACTACTCCTCttattttttatttatttttatttttttGGAAATAATCCCGATAC-------ATAGACACGAATTAGCTCACAGATGCTCTTGAAACTGGTGCAAACCATGCTTTCAAGAATTATGGAATTCACCTTCACA------TAATCTGTACTTCTGTTAATGAACGGCCTTCCAGCTCCAAGCATACAGGTGTTATGTGTCTCTCTGTGAAATGTTG----AGCAGCAGTGAGCATTTCACC----TGGGTATAGCCCT-TCAGCGAGGACTTGGAGGCCTGACATACTGGTTT-CCAGGTGACTTTTGTTGCAGAATCGAAAAGACCGAGAGGTGCGGCTATCAGGATCTGTAGTGCCAATGACCAGAGATT-GGCACACCCAAGCTCAAC------CCAGCTGGTCTTTAACAGCTGTGGGACCTTGAACTGGGATGAGACTCATTGTCCACAACTGGAAATTTCAGGATAAAGATTCTGACCTTGCTA------------------------------------------------------------CAGTCCTAGGACTGTGAGCCTCTTGGTAGTAG----CCTCTCGCTTCTTGTAAAAGAAGGCCTTTGAAGCTTCAGGGTAGCATTGCTTTACGGTGCCATT-------GCAACTACAGGT-TCCAACATGTGGTACATAAGGGACAGTTAGTAGATGTC----------------------------------------------------CCTGGGGA----AGAAACATTT----GACATAGATGT--CTCAACA-------------------------------------GTCCCTTGTTTCA-AGCAAGAACTACTGTTAGCTCCAGTGTTTATAGCTATTCTAGGAGAGG----GCCCAGGA---------CTCCTACTGTGACAGTGAAAACCCAAGTAAATGGCTTGTCTTGTCTGAAGGTTTCCTAGTGTGTCTGTGGCAGCATCCT------CCATCTTTCCTTCAGTCATGGTGTCTTTTCTCTTTCATCCAAAGGGACAGGCAAAC--TTTCCAAGTATCAATTTAGGGCTGGA-------GTCTTCTCTTATCTGAAATTCGTGGCGCAGTTGCCACAGAGCAGAATCT-CAGACAGCTCGGTGGGTGATTTTATAGTCAGCATTAAGAAAAAAAAATTGCCATACAACTAATAAAGTTTTCCTTATTGCTGTAACTGTTGGCAAAGGGGGGTGTCTGGGGAGGCTGATTGCTTGAAAAGCTTCATTATTCTGCAAGAATATTTTTTATATGATTTCAACAGCTCCTGACTGACTGTCAGCCTCACTGTGTGGCTTTTAAAAGTGCCCCCTCCCCCCTCCCACAGCAGATCCTCACACCCACAAAAGCGTTCAGGTCACTTATTGTATACCTGAGTCTTTCCCAGTAATTAGTGGGTAGAATTACCAGGTAGCAGGTGGTAGGTGTCTGCTTGTAATCTGTCAATAGGAGCTGCAGTGGTAGAAATTTTCATTTCTAGTGGCCTTCCAACCACATCTAATTTAAAGTGTCAACAGA--GTTTATTTCTGTCTTTTGCTCCCACTGCCAGACTGTGAATTTTCCCTTTAGAAATCTTGTCTTAAAGTAAGACAGATATTTGGAGCACACGAACTTCAAAGGCAACTTTTTCCTCACCCACCACAAAATATGTAAAAAGGACTTAGGCCTCATTTCTTTATCC-CAT-----AGCGTGCTTGCAGTCTTTATAACAGCTGCTCCAGCCCAGGCGTCTTGTCCAGGCAAGATT---AGGAAGCCCTTTCCTAAACAGTGAAGTCACCTGTGCCAGCTGGACCAGAA-----------------------TGAGGCTACGGAGTTACAGGAAAATCTCTGAAG-------CCTCCTTGCTGTTGTCTGGTGTTGGGTTCCAC
s HiC_scaffold_1 133746216 2953 + 233722169 TAGATTCTTTTAAAGTTCTTCTTTCAAAAGGTAAAAGTGAATTCTCTTTTCCTTGAGTGAGAACTGTGCCTGGTGAACTGATCCTGCCAAATGGAAGGCAGTGGGA-TCAAAGTGTGTGATGTCCCAGCCTAAGTCATCCAAAGCTTCGAGGCTTCCTCTTTGATCTTAGATCACTTGCTTGGGAGCAAGTCAGATGCCACTTTTTAGAAACCCCTGGTGCATGTGGCAAGGAGTTGGTACTTCCTGTGGGAAGGGACATGAGGCCTCCTCCCTCAGTCACAGTAGTAGGCCTTTGTTGACC-AGACTTTGCAGCCCCA--CACCAGCCTTTTGA---TTCCAGCCTTGGCCAGCAGCTTGACTTCAGCCTCAAGAAAGGT----ACCCTGCAAACCATTTCCAGATTCCTGACCTTCAAAGATTATGGGATAATAAATGCTTGTTGCTTCAAAATACTGTTTT----AAGAGTAATTTAGTCATGCAGTAATTGGTAATCAATAAAATCATCACTAATATCCTTACGATTGTTTTACTTTCAGTTTGTCTCCATTGCTGCAGAGATGCTTTT----GCTCTGTTGCTCCAATCAAAGGTACAT-ACACTTGTCTCCTAGATTTTGTACTTAGTGTTTGAGAAGCAGGA-AGTAGAG---TGACTGAGAACCCAGTCTACGG-------TCATACCATTTAGAATGTGCCTGATCTCTGCTGATCTTGGAAGCAAAGTAGGGTTAGGCCTTGTTAACACTTAGAAGGGAGAATGCAAGTCATGGAGACCTGGATTAGAATCTTTCATCTTCTTCAGGGTGACTTGAGATAGATTGTTCTTTAGTGCATTGCTTTTCCTTGTATGTGAAGTGGACATGATAACAGCACATGGGCTCTCTGTGAAGATTAAACCGGGTAATAGGTATAAAATGAATAGAAGATTATCTGGTACATAGTGAGTAGTATAGACAAGTAGCC--AATTACTACACCATGAAACTATTAgcaattaattttaataacaaaagaCTATTTTTAGAGGTGCACTATATTTTCCttataatttttctgttctttatag---gTTATGTTTTTAGTAGCATTTTTGTCATTACAAATAGTGTTGTGATAAACATAACTGA--AAATAAT----------------------GATTTCATCAGACAGAAACTCAATATTGTATATGTAGATATG--CTATTTCAAAAATGCTCTGAAAAGTGGCA-AAGCCACACTTTCTGAAATGCTGAAATTCAGATTTCCAGCTACCCAGTCTACACTTAAGTTCATGGATGACTTTGTAGCGTCCAGTGTAC-----TTATGTGTCTCTTTGTGAACCTTTGTCATAGCAG--GTTAGCCTGTCTGCAGTGTGGGGACAGCCCTCTAAATGGGGTCCTAAAGACCTCAGGCACCAATTTGCTAGGT-----------CAAAATTCACGAG-----TAAGTCTGGATAGCAGAGACTGTGCATCCAATTACCTGGCATTCAAGACACCTGAGCTGAAGATGTGGCCATGTGGCATAT--TAGCTGGGTGACCTTGAGCATAATTgtcacttattttctttaaatt----ttataggGCATTGATTCTGACATTATTAGGGATAtagagagaaaaattttaaaagcctatgtctaaatataaaggaagaatatAAAGTTATTGTTAGGAGTGGAAGTTTCCTGGAGGCAGgaaacttcatttttcttatgaATTAATTCCGTTGTGACTTTA------------TTTCTGGTTGAATTACAAACAGCAGCCACACATCTCCAGTGTCTAACACACAGCAGGCACTTAGCAAATGTCGGTTGAATGGACAGACTACTTACTCCTACCTTGAAAAACGGCTTGTGTGACTTCTGGGAAGTCGATCACCATTTTGCTGCCTTGGGTGTACCTCCCCATTAGCACTGCTTCCGGCACGCACAAGAGTGCTTCCGGGTCACTCCTCTCACAGCCAGAGCTATCACCAGCCCTGATGTCTGCTGTTACCCCTGGAGAGGCCTAGCCCTTCATTGCATGCTCTcccacagaggaagagagaatc-aAGAAAACG-CTTAGCTTGTCTCAGAATTTCATC-TATTTCT-TGGCATCATCCTTGCTTGCTTCCTCTCCCACCCCCCGCTTGTCTTCTTTCTTCCATCCAAAAAGTCATACATACATTTCCCAAGTATCATTGTAGGGCTGGAATCCAAAGTCTTCTCTTATCTGAAATTCACTGTGCACTTGCCACTTGGCAGAGCCTGCAAACAGCTCAGTGGGTGATTTTATagtcagcattaa---aaaaaaattgccacaCCACTAATAAAGTTTTCCTTATTGCTGTAACTGTTGGCAAAGGCAAATGTCTGGGGAGACTGACTGCTTGAAAAGCTTCATTATGCTGCAAGAATATTTTTGATAGAATTTCGACAGCTTCTGACTGATTGTCAACTTCACTCTGTGGCTTTTTAAAGTTATCCCCCACCCCTCTC-TAATAGGTCCTCAAACTCA-AGAAATGTTCAGGTCAC-TGTGGAGTACCTGAGTCTTTCCAAGTAATTAGCAGGTAGAATCACTAGGTAGCAGG----GAATGTTTGCTTGTAATCTGTCGATAGGAGCTGCTGTGG--GTAATTGTCATCTTGAGTGGCCTTGCAGCCACATCTAATTTAAAGTGTCAATAGAGGGTTTATTTCTGT------------CTACCAGGCTGTGAGTTTTCCTCTTAGAAATTCAAGCTCAAAGTAAGACAGATATTTGGAATATGTG--------------CATGTTCCTCAACAGCCCCAAAATATGT-AAAAGCATTTAGATCTCATTCCTGTATCTACATGATGGAGCCAACCTG-GGTATTCAAGGCAGATGTAC-------AGCATGTGATAAACGCAAGACTGACAAGCAGCCTCTCACTAAACAGCAAAGTTTGCTTTGTCCACTGGACTGGAAGCAGTGGTGTTTGTGGActggggtgggggtagggagacAAAAGAAAGCCTCTCAAGGATCATACTCTCTTAGTAACGTCAGGGGCT-GATTCCAC

a score=66070
s chr3           147062769 2272 + 160039680 TCTTTTCCCGTTTGACTCCTTTAGGTTAT---CTCTAATTTTT-AGTACTGATAAAAAAGCATTCTGAGAAGACACTGATGTCACATGGTGCCCAACGAATTCTTCAGGTCCTGAAGTTGATGAAGGTGAATACTGGTTGTGATTGAGAAACAACTACGAGGTT------AACTTGGACTTCCCAAAGATCTC-TTTCAAGCTGACCCCTAAAGAGTTGTGGATGTGACCGATGGTATCCAGCACTAGTTTTGAGTGTCTATCTTATCAAGATGAACAGATTTTTCTTTCCCGGCCAAaaacaaacaaacaaacaaacaaacaaacaaaTCAACCAACCCCTTGGGATGGGGAATAAGACTGACTGTATAAGACTGACTGTATTTATAACCAAGGCATTCTGGCAGCGCATTTAAGTTCTGATATTAATCAGCTTTCTCT--TGGGGACCACACCTAAGAGTGAGCAGAGAAG-----GGTATTAACATTGCACTGT-ACTGCCATTCGATATCAATCTGGCTTTATAAAGTAATCCATCACATGAACAGAGGACTAAATTTGAAAAGGAAAACCCACGAGAAACTT--CTCTATGACACTCAAATTCTAAGACCTAAGACATGTTCTCTGGCTCCATTCTTTGTACTAGACAGCCATTAATAAACACAGGTGATCCCCACAACTTTGAGCACAA------AGTATAGACCCTGTGCTGTAAATCTCTCAAGATATCATGGGGTCCCCATTACACCAGTTTCATCCTGATGGGGGGATTTCTGACAAATTCTATGGCAACCTGACAGATGTG-----ATGTCTAATCTCTTTAAGTTCCCAAAACACCTGGAAAGTGGACTATTTTTAAAGAACAGACTAGAAAGCAAATGGTCCTTGTATTGAACCTTTCCCTTCCATGTCTAAGCAGCTCTTCAGACC-TTCCCTCCTGCAC----CAGGAAAAGGGCTGGCAAGATGTCAGCCTGGGCATTGAAACCGTCATAGGAGAGCAGGCAGGCACTAGCTGGCGTTTCCCTGCAGCTAAGCCAGGAAAGAGGTGAATTTACAGGAGTGTGTGTTTCCCCACCCCAAACCCGAAGCACTGCCTACCAACTTCAGAACACCATGCCA-----------ACTGAACTGTGGCAACAGGCATGCACGTCGTCAGACCTCGAGAAGTATGTCCCGGACCAGAGTCTCGGGAGGTG------------------------AGGAGGAAAGCGGTGAG-------------------CTTCTA------------GCTTTTGAGCTCAGGCCTGCATTTCTAAACTGCACAAATCCATCCACACTCCTTGTGCGGCGTGGAGCCAGGCCCAGTGGAGGCTGAGAGGTGGTTTCATGG--CGTGCTGACACCCTTGGAACCGTACACAGTTGTGAGGTCTGCTTCTCAGACATTTGGACAACTGCCATGAAGAAGGGGGTGGGGGGAACTGGGCCAGTTTGTGTTCTGTTACAGACCAGCCTTTTGGAGGACAGAATTCCTTCCAATCAAAATGCTATGGATTACTCCCTGCTGTGAGCTAATAGGGTGCTAATTAGCATATTTCATTTATTTACTTAACTGGGATAAAAACCATTGGGCACGTGGCCCACTTAGAATGGTTTCCCTGGGGGAAGCCAGGA---GATGCTCTGAGCACCAACTCCCTGTGCATTGCAGGAAGCCAGTTCACAAACGCAGGAT-------GTCCGCCC-----ACTTCTCTTCTCTCCTTCACACCTCTCTTTCCTAAacacacacacacacacacacacacacacacacacacacacacacacacacacGAGGCTAGAGTCTATTCTGGTCTTGCTTCAATAAGAAGCTAAAATGAAAAGTGAAACTGGCCTGCTGTTTCCTGGTGTTCGTCCACATTGATGCTTTATTGACAGCTGTCTGGACCCCTCTGGACTTGCCTCTATAACTTGTAATAATGACTGTAGGTCACCAGTGGAGGTGCAGAGCTCAGTCTATCCACACCAGTCACTCTCTTTGCAGACTCAGAA-TGGACTCTCATGACCA-TGAGGGGGTGGCTGGGCTCCCTGGCCCTCTCTGGGCCACATCCTGGGGAGTAGTAA---ACCGATTTGCCATCATTTCCT-CTCATTTGGGGAAGAAAGCACTTTACATGTCTCATGCTGCCCTGGAGTACTTTTAGATTCTTTGGATTTCCATGGATGTTAATCTCCCTAATGGTGTATCTTCAGCCTATTCAGGGACAAATCGTTAACAGCGTACAGTGAGAAACAAAGCAGCCAGAACACAGTAAGCACAGAGAAATGGATCCTAGTCCCAAGATACTTCCCGGACTACTCA-GCCCA-TGTGCTAAGCAG
s HiC_scaffold_1 133749641 2199 + 233722169 tcacttgccatttgcATCATTTAGGTAATGtgctttatttttccaatataGAATAAAAGACATTCTAAATAGACATTGGTGTCATATGGTACCTAACCATTTCTTCAGTTAATGCAATCAGTGTAGTTTGGTAATGGTTTTGTAGGAGACACAAATATAAGGTTTTTCTGAGACTTGCTTTCTTAAAGATCTCATTGCAAGCTGAATTCTAAAATGCTGCAGATGTAACAGCTGCTATCCAGCATTAGTTTTGAATTTATACCTAATCAAGATAAATAGATTCT-Cttcacaggtaaaagaaaaac-----------------------------------TTAGGCTGGTAAAAAGGAGCAAC---------------ATACATCTAACCAATACAGtctgttaatatattttaatt------ttaatcagcTTTTTTTGTTAAGGAAGAAACAGGAGAGCAAGCAGAGAAACATGTGCTTTCAATGTGGCATCATTATCGGTATTGAATGTCTGTTTGGCTTTAGTAGATA--CCATACAATGGA---AGAATTTAACTTGACTGAGGAAGTCCACTTGAAATTTACCTCCATACCGTTCAGAT-----GACAAAATATCTATTCCCT--CTCCACTCCTTCTATTAAATGACATCTAGT---TACAGGTGATCCTTGTATCTTTTGGCATAagaaccaaaaatattttatgtgc----atGTTCATGAGATA----GGAAAGTTCATTGCATTGGGGCCACTCTGCTGGGG--ATTTTTGACAAAGTCTGTAGCAAG-TGAAAAATGTatcataatttctaatttcattaa--cCCCAAAGCTCTTGGAAAGTAGA-TGTTTTAAAAGAGCAGACTGGAAAACTG-TTCTCCTCGTTTtgagctttttcattttgtgtatgtACTGCTGCCCAGACCCTTGCCTTCTGCACGGTGCTGGAGGAGAG---GCATGATGTAAATTTAGGCCTTGAAGCAG--------------------------------------------------GGATAGAGGTGAACCTAAATGAGCTTGC-TTTCCCCACAAAAATGCCAAA----TTCCTACCATTTTCAGGAGA--AGGCTGCTTTTAGCAGGGCTGCTCTGTGGCAGTGTGCCTGTACATCT---GAGTTAAAGAAATGTATTCTGGACTGTAGCATGGGAAGTTAGATTGGAAAAAtgggaatattttcaaaatgaaattggTAAGAGTTGCCCTCTCAAAGTGCCTTCCCAATCTGCTCAGTGCCTTTGAGCTCTGGCCCACAGTTTTGAATTGTACAGAACCTT----GCTCAGTGTGCTGCATGGCGCCAGCTTTGGGAGAGACCAGGAGAGGCTTTTGTGGACCATGGTGACACTCTCAGAATTGCACACAGTTGTGAGGTCTGCTTCTCAGACATTTGGACAACTGCCacgaggaagggag-ggaggaaactgGGCCAGTTTGCATTCTGTTACAGACCAGCCTTTTGGATGACAGAATTCTTTCCAATCAAAATGTCATGGATTACTCCCTGCTGTGAGCTAATAGGGTGCTAATTagcatatttcatttatttacttaactGGGATAGAAACCATTGGGCACGTGGCCCACTTAGAATGGTTTCCT--GGGGAAGCCATGAACTGCTGCTCTAAACACCACCTCCATATGCATTA-AGCAAACCAGTTCACAGAAGCACAATACGAGGCATCCACCCCCAcaccttctcttttctccttcacaCCTCCCTCTCCTCcagacacacacaga-----------------------------gcacaGACAAG-GGATGCAGTCTAATCTGCTCTCACTTCAATAAGAATCTGAGATGAGAAATGAAATTGCACAGCCAATTCCAATAGTCCATCTCCATAGACGCTGT-TTGGCAATCACATGGA--CCTCTACACTTG-CTGTTTTACCTGTAATAATGACTCTGGGGTATCCTCGGAGTCCGAGACCTC------TCCTGATCATGTGCTCTCTTT-CAGAGTGAGAGCCAAACTCACACAGCAGCCAAAATGGTTGCTAGGTCTCAGGGCTCTCTCTGGATTGTTACTTCGGGAATCTTAAAACACCTGTTTGCCATAGTTTCCTCCTTACTGGGGCgagaattcattttataattctcACACTGCACTGAAGTACTCCTTG-TTCTTTGGAGTTCTGTGTATGCTGATCACCCTAATGGCATATTTTTAGTTTGTTCAGGGACAAATCATTAATTGCATGCAAT-AGAATCAAAGCAGTCAAAACCCACTAATCAAAGACGAATAGATCCCAGTCTCAAACTGCTTCCTGTGAAATGGAGGCCCATTGCGCTAAACAG

a score=37741
s chr3           147071994 3057 + 160039680 ACAAATTTTGCTGAAATCACAGTTCTTGGAAGTTTGGAAA------TAGCTTCAAACAGAAACCTAGTCTTCCCTGTCTGGTTTATGTGAAATCCTTCTTTGATGCAGAGGGATGGAAGAGATAAAGGCAGCAAGATCCCTTTGTCTCTGTAATACTAGGAAAATGCACTGGAACGTAGTC-ATGTTCTTCCTATT---GCAAAGAAAATAAAGCCACACACTTGAAAAACCTGAGAACTCTCGTGGCGGATGATTTAATAAGATCATCTGAGAACGTGGGAGCCACAGG-------CACGGGAAGCATTCCCGACCGACCTCTCCTTCGCTGTGTATGAG----GTTGTCATGACAGTCCGGCTCGGTATCACATCTAAGCGCTGCTCATCTAGAAAAGTTAGATGATTAGGCTGTCTTTCCACCT--CTGACTTAGCCTGAAGATGGAGCACAATCATGCCTGAACTGCTCTCCTCATGGTGAGAGACTTCTTGGATGAGCGACAGTATTACTGTTGTTAT--------TTGTTAACGCACCTCTAAGTCATCC-----------ATGGTCTTGGCTGAGACCGTTAACATCTCACATT------ATTTTTGGTC-TATAAAATAAGATATTT----------TTTCTAGCA-------TAGATGTGGGTTTATTAGAGCACTCCCCACATCCCCAAGACG--CTAAAAGAACGTTTACCAAAGGAAAGGGAATTG-AGGGGCAGAGATTCTCAATGGTTAGTTTTTTGTCGGTGGTGCTAAGGGTCAA--AATTCTCTGTGTTCCAT----TTCCTTGGGATTTTAAGGACAGGGATCATAACCTAATGTAGAATATTCACCTCGCTCTC----TAGGATTGACGGTTTATATTTAGATGT--CAGTGTATGTCCCACCATTAGTGTGTGGACATGTCTGTTAAGAAAGAATGTGTATGCTTCTAAGAAGTAGCGTGCTAGCTAGCCAAGGATAATATCTCTAT-ATTGACAGCTTTAGGAATAGAAATCACAAATGTTGATCTCTATGG----GGACTTGCATTGATTCTACTTTGAGTTGTAAGGGAGTAACTGGTTTGGTGAGAAACTGGCCTCCAGAAAGAATGGGGC----TTGCTTTGGACAGTGAGAGAGTGTGAATTACACCCTCTATGGATATAGAAGAGAAAGGAAAGCTCAGAGAGCTTGGAGTTCGTAACAGGGAGTTACTAAGTTTGTAATTGTGGTAGGGGTAT----TTGAGAATCTTCGCTGTG--CTCATTGTAGCCAGGGCTTTTATCCTGTTAATATTTTGAGACTATAGGTGTGAGTTCCATTGACAGAgatgatgatgatgatatgatgatgataatTATAGCCACAGGACACAGGTAATAATAGCTTTTGTTTATAAC--ACTGGTTCTCTGTGGGGCTTTAATGGCAGTAGTAG-------TCTctcattgtattctaaccacaactttgtgcagtagtactgttatgactccctctgtgtggatagga-aaactgaggcacacactgaggttaacagatttattaaaacccacatagtaagcaaggagtcatgctgaaagtcaaactcatgcaaccCTAAGGCTAAACTTCCTTCAGTGACTACAACTCCTAGCACATCATCACCACCGTTACATTAATTCAGCTCCCATGCTTGTAATGCGAAGCATACCATATGCTAACTTTCTTG-TCTTTATGAGAGTCCTATGCATCTATACAACAGTTAGCACCATTGCCATCTCATAGATGTAAAATCCAGAGGTCAGAGGGCTAGCTTCAGCAAATTTGTGCTGTTAGCTATTATGATAATATTATAAAAATAGAAGATTGATTATGGAAAATA---TTAAGGATTAGCAAAAAGAACTTGCAAGACACAGATCAGTTGCAAAATATTTCCTGTA---TATTTTTACTATAATTATGTTAGAGATGAATAGACATATT---GTTGTCCAAAGGATATAATTGAGAC--AGAAAAGTTAGG--------AAAGTTGT----------CACATATCATA-------GATGTTTGGGATGGACATGAAGACCTGG----GAATCTAGCAGCACTTTGAACCATAGTCATAAGATTTTGAAATGTTGGCTCTTTGTGCTAGTAGCACTATTTCACTTAGTTA------------CCAATAAGTATTGAGCTCCTACATGCCATGTAAAAAGTCACCTCTCTCCGTGGTCTCCCAGGTGTGTTCTCCAAT----CACAGAA------CACAGGTGTGACTGAGTGGTGCGGCAGAGATATTTAAACAAATGTAAGGACAATTTGACAGTGATGATTCTGTGATTGTTCT----AAACATTTACTTGAACTGATTTTGTCTTAAAACAAAATCTTAAGTTCAACAAGCAGCAG-AAATAATGCGCAAATGTATACATCATACACACATAAGCATCCAGAGAACTCCA------TCAGGTCTGACCTAAAAGGGGTCACCACTTTGTAGTAGCTGAGGGGAAC--------ATTGCTCAGCATGGTCTTGCTCACGGCCCACCTCTGCTTGTTAAATAATTCTT--TGCTATTTTCTTTGCAAAGTGAGTGTTGATTGAGTGA-CCCACGGT-TTAGGGGTAGAATTGTTTCTGGGATCAATGAGTGATGGTAATCATAGAGCCGGTCACTGGGAGAGAAGGAAAGATCTCAGGGCAGCTTAGATACAGAGCCTCTGCAATTGATGAGTCTGGTGTGCATTTCCTTCTGAGACTGTCTGCTTACTTCGATGCAATGAACAAGGACATCAGAGACAAAGGAAAATGGTTGTTGCTGCTTTCTTTCCTCTGAATTTGAAACGCAAGGGTCTACtatttattt-------atttatttatttatttatttCGGACAGTCCGCACCTctggacttcaactctctctctagtggaggatggtcttgaactgttgcgcatcctgcctcctaagcccccaggtgctgggattgcagggttatgccaccaaaactcagtttGTAATGGACAATTTTGTTGGAACTTTTTATAACTAAGCAATGCTGGCACAAAAGG-GCTCCCTGGTTTGGGGCATGTATATACCTGGCCTCCTTTCAATTC-CAAAGCACTGCACTTCCCAGCATCACATGGTAACTTCCAAGTTGTAAA-TTTTAAAGACAGGTTTGTTGGAATGGGGTTT--GAAATTtttgtttagc
s HiC_scaffold_1 133757406 2986 + 233722169 ATGAAGTTCATTGAAACCACTtttattcaagttttaaaaaatactttatcttTAAATAGATACCTGATCTTTTCTATATGATTTATGTGAAATCCTGCTTTGATACAGGAGGTTAGAGTAGATAAAGGCTCAAAGAT-CCTTTGTCTCTACAATACTAGAAAATTATACAGGAA-ATAGCCTGCATTCCTCCTACCAGGACACAAATAATGAAACCACAC----GAAAAA--TAACTTTTCTC-TGTTACTTAGGTTGATAACACcgt-taaaaaagcagaaa-aacaggaTGAGGATATGAAGAGACCTGGTTCCTGATCTCTGTTGTGCCACACACAAGCTGTGTTACCTTGATAAGGTAATTTGATGTGGTTAAGGTGCTTTCCTCACATGTAAAATGCAGATGGTAATATTATCTTCCTTCTTTATCGATTCACCATGAGGATCAA--ATAAT-ATGTCTGAGA-GCTCTCTAGACGGTATAAAGCTTTCTGGATAtgt----atcttactgtttttatcactattaCTGTTATATAACTATTACTTTTTCCCAGATAACCTTATGATCTTGGACAAACTATTCAACATCTCTCCCTTTCTCAGTATTTGTTCTTACAAAATGAGGTACTGAACCAAGTGATCTTTAGTATCTCCTTTAGTCGTGATTATAT----------------TTTTCATGGTGACTCAGAAGGATGCTCACACATTGAGCAACAGTTATAAGGGCAGAGATTCCTCATGCCCAG-CTTTGGTGAATGATACTGTAGATCTGCTAAACCTACATGATTTATGTGGTTCTTTGAAATTTTAGTGGTGAAGATTACAAAC-AATGTCCAGCATTTGCTCAGTTCTCTtagttggtttggttttttacatggaaccTTTGCTGCGTACGTTTGCCGATTAGCTTGT-ACCATACTTTTTGAGAGGCAATGTTCACAATTCTAAGAAA----GGACAAATTAACCAAGAGTATCTGATTTACAATTGACAATTTTAGGAAAAGAACTCAAATATTTTGATCTTCATGGAACAGGATTTGCCATTAttgcatttttagttttaaaggaataa--------atgaaaacatggcCTCCAGAGCTAACGAGGAAAGGTTGCTTTTGGTGGTGAGAGGTTTTGAACTGTG------ATGGAT-----AGGAAAATAAAAGCTCAGAGAAAGAGGACTGTGAAACAGAGAACTAGTAA-TTTGTGA----aataaaggaatgctattgacaaTCTTCTCTGGGTCCTCATTCTAGAAAGGGATTTTAT-CTGTTAAtagttttatattataaatatgtgtTCCTTTGATAcaaatgatgata-----atgatgaagAAACT------------ACACTGA-AACAATAGCTAAAATTCATAGCATATTGAGGCAGTGTATGTCCCTTATCTAAGCGTTTGCGTATGTTCTCTCATTG-ACCCTAACTGGGACATTATGTAATGGCACTGTAATTATTGTCTCTTTGCAGATGAAACAAATGGAAGCACAAAAT--AGTTAATTAACTTACTTAAGATCACATAGTAAATAAATGATCGAGCTTGAATTCATACCCATACAAAACTGAAATCAGATTTACCTCACTAGAGATAG---------------CACCACTGCCAACATGAATAAATAACCCTAATTGTTATGCTAGGTACATCGTCTATTAACTTCTTTGATCCTTATAATAACCCCA-----CAAAATAGCCGTTGTCATTGCCCACAACTTACAGATGTGAAAATCA-AGTCCAGAGGGCTCGCTCCAG--AGTTTATATTCTTAGCTA-TATAGTaaca--atagtaatagtaa--tagtaataggaAACACCCTACAGTAACAGcaacaaatgtttaatttttacagGCTGTCTGTTAAGTGCATTGTGCAGTTTATTTCTGCTACTATTACATTAGGTACAAatagctttatttccattttccaaaagatgaaaCTGAGACTTAGAAAAATTAAACTTGCTTCAAATTTCTAAAACAATAATACATAACATAAGATTCTGCTATGTAGACTGACCCTAAAGTTTTGATCCTAAAATCAAtactattttgaatgata---attaGACTTGGGACAA--GACTCTTCATAATCATAGCATttggtcattcattcattcagcaaatgttCACTGAGCATGGATATAATGTATACCATGTAATA--------TTCTCCATGGTTTTCCAGGCATGCTGTAAAATGCTGTACGGAAATCCTCTAGAAGGATGAATAAATGGT--GGCAAagatgtttaaataaatgaaagaatggtTTGATAATGATTATTCTAGGCTCGaccttagaaaatatttaaattaactgattacattttaaaacaaaatatttaagtgGGTGAGCAGctgcagaaaatattaaaatgtataaaaacca-----------ATCAAGATAACTTCAGTAATGTGAAGCTTTTCCTGTAGAGTTCCCTGCCTTTGAAATAAATCTGTGAAAATCAGTGAGATTACCTAGTGCAATATTTTGAAA-----------GTATGTTGAATATGTTTTCCTACTACTTTATATGTGACATGAGTTCCAGTTGAATCAGACCATGGTCTTTGGGCTGGGACAATTTCTTGGAGTAGTGTGGGATGTTAACTATATGAC--GTTACTAGG-------------TTACAGGGCATTCTAAACAAAGGACTTTTGTG--TGATTAACCTCA---GCATTCTTCTATTTGACCATCTTT-------------------------------------------TGTTCCTTTCTGATATTTTCCACCT---CTTGGAATGCACAgg---acttttcattttaaagaaactcaTTCCTT-----------GGCAGTT------------CTTTAATATTCTGTC----AGAAAA--------AATTAttg---gtattgttttct-----tctggGTTTAACAACAACAGCATTATTGTAt-----attatttgtgaaaatgtagttTTGTTAAAAC-TTCTGCAACAAATCAATGGTGGCAGAAATGGAACTTTTAGGCTAATGGTGTGTATCTATCCAGTCTCttctcagtttaaaaaatatgacaTTCCACAGCGT---ATTATACCCTTTAAgttgtagatttttaaatatatggtt-ttgTACtggaatttcaaaaatttttaattggc

a score=418177
s chr3           147080438 12952 + 160039680 [encoded data, 13632 characters]
s HiC_scaffold_1 133766171 12074 + 233722169 [encoded data, 13632 characters]

a score=287890
s chr3           147094582 10021 + 160039680 [encoded data, 10796 characters]
s HiC_scaffold_1 133778885  9980 + 233722169 [encoded data, 10796 characters]

a score=49002
s chr3           147113696 2728 + 160039680 ctccACGGGtgctacaatttggatgttgcaagtcctcaagaagttcctgt-tttaatgtctgggtccttggggtggccctattagaaagtggaagaaacttgagatgtggagtcttacgggagaacctcggcctattatggcaggcatgccagtacttgggattgtgaaatcctggctaaac---ctctttgctgaaaagactgaaaagtctgatgaactacccagcttgcactactgcacattccttgcattgttatcatacactgtcatgaggagccaaaggaatagatctaactcatcgggggctggagcatctaaaactgagagttcaaacaagccttggctcttgcgagttagttatctcag-tgcttcattgtaagaatggaaagGTAGCCGGTGCAGTAGGTATGTGTCCCTTTATTGAAGAGTAGCCTTTGTGGGTCCATCTGAACCTTGC--CCTTCCACCAGACCTTGAGCACCCATATGCCTAGTCATACTGTTAAGGAAGGTAGAAAATATA------------------TATTATAAA------GTTCATTCCACTCATCCCAATAAGCTCAAATACTGCCAAACT-TACTACGTTGTCCAGTTGTCCATCGTACAGTCCCAAGTGTTTCTCAGT--CCTGAGAGAGCATGCCTCATGCTTTGCAGGAGGAAGCATGGCTGTTTGGAGCTATCCCAAGCTCCAATTGGTCTCTCAGAGAAAGTCAGACTCTGTTTCTAAATTCCTAAAGACTGGACATTCTCTT-TTCCCTTATCCTTGCTCATCCAGTTCTGAGTCAACTCTGTCTT--------------TTCACATGCTTGTTCTTGGAAGGAGGATCAGGTTGATTTATTCACACCATCTAGGAAGAAGTGTCAATCCTGATTAAAGTGATACTCTTAGCAGGGTTATTTAAAATGTAAAGGAAACCAGTGTTGATACCAGCAGAATCTATCTGTAACAACATAATTGCTGGCAATA--GAGACATACACT-----------------ATGTTAC----------------AGGTTCTACTCGCACTTTGTGCAGACCTTTAGTGTAGCACCCC------CAGTTGTCTGTGGAAGGGGCTGTCTTCCCTATGGAGCCCTGTTCCTTGAGA--AGACCTTTCCTTATTTATTACTTTGTTCTCAGATCTTAGTAAAATTCCTGTTGCAGAACTGTTTCTTGTGGTTTTGTGTTGTCTTTGatatattttttaaatctttttttttttttaCAACGAGACTGTTACATGGACTTTGGGGGAATAAAAAGAAGAAAATAAAGATGT-AGCTTTCACTCTTCTGCCCACTAAATAATCTGTACTTTTTGATCTTTCTCTGGGTTTATATTCTGCAAGTCCCCATTGTTCCATGTACCTGT-TTTCATTGCCCCACAATTCCCTTAAAAAGCAAAACTGTAGCTGGAGGGCTGATATGTGGATATTTACATATCTAGTGAAGATGTTCTTCTAGTTGGTGTATACCTGCCTTGGATTTGTACAGGGGACTTAGGTGTGACTCACTTCTAACCTCCAGTGGCTGTCCAAGTGTATCCTACAGAGATCTCTTCCCAGGTAGGGTTTCTCTAAATTTTTGGTGTCATTTCTATACAGAGTTGAAAAGTCTTGTTTCAGTTTGAGCCTGTGCTTCATGTTTGCCTTCTGTTAGCTCC--ACCCCCTGAGCTGAAGTAAG------AAGACAGAATAG----ACGA----TCCACATGCTGACTCCCACTGATAGGGCATGATAATAAAGTCAGGTAGCAGTAAAGTTGGGCACACTCAAGACTCTTGTGCCCCAGCTAACAGAGCAGAAATATGTATCACATTCGATCTTTTCTCCTTAAGAGAAATTATCTCTTATGTTGTTTATTCAGCCTTTTATTCTTTCAGAAATTGTTATGGCCAAACAGGTAGAGATGATGTCTGAGAGGAGGTGTCTGCCCCGGCTTGATAGTGGACGTGTAGTTCATTTGGCTTAACAGGTAAACTCCTTTCTGCTC---------TTCA-AGGAACACACATGATTTAGCgggaat----------catccttaagaacttggaagaatatatttggagaatactcctctcatctctgtgctgtgactt-ctgtaatgatg--acaagctttgagtctggttttgggggctatttttccattatgcgcagtgagacagcagagtcaagacact--gaggggtgaagagagggaaggtgggagcaagaaagagcatggatgacagcgtctgagcaccagattcagcAGATG-ATGACAGTTGCGTTAAGTCTTCTTTTATTTTTTTTTTATAGCTAATTTGAATTGGTTTCTGCAAATCACATCAGGAAGATGGCAGCTAAGCAAACAAGTGTGTTCCCAGGTTGTTTGCCTAAGTACAAATTATTTACACTTTCTATACGATAAAGATGTATATA--TTTAGTCATTTTAAAATTGCATTTTAAAGCCTGTAATCCGAATCCATCAAACTTGGCACTGTCAAATATTAAATATGAGTAAACCGAAGAAGAACAGTGAGAGACCAGTGTGTGCCTTGTGCTATAGAACGTGCCAGAAACCACATGACCAGAGGAGCGATTGTCGC-TGCCAGCCTCGGATGCAAAACA--ACATCTCATTTGAGATCCCATTGTTTCTCATGGATTCTACTACATTGTGGTTCCATAGT----AACTTCAAAAACAATTAAGAAGGATTGGAAAAGAGAAAAACTGGTTTTGAACTGAAATTAAAATTACATTCAGAACAATACCAGGGGGTGGTGAGGCGAGGAAGAAGGAGAGAGGGGCAGGA
s HiC_scaffold_1 133793007 2681 + 233722169 CTCATTGGGCACTGTAGTTTGGGTGTTGACTGTCTCCTGAAGGTCTGTATGCTTAAAGGCTTG-TACTCAGGGTGGAACTTCTGGAAGGTGGTGAAAGCGT----------------TGAGAGTTCCTTAG---GTCACTGAGGACTTGACTGTGAAGGGGACCGCAGGACTCtggtctgtctttctctttgcttt-----ctga-----ctGAGGAAGTGAGAAGCT---------GCAC-TTTCTGTTATTGCTGTCCTGCATTCCCTAGAAGC-CCAAAGAAACAGGTCCACCTGATCATCTGCTAGTACCTCTTgcactgtgagccaaagtaaaaatt--tttctaTAAGTTAATTCActcaggtattttattacagtgatggaaaactaACTAATGCAGTGGGTGTGCCTCAGCCTGCTTAAAGGT----------TGTCTGCCTGCACCTGGCAACTTCTCCCCAGACAGTGAGGACCCAGATAACTGATCATACTGATTGGAGAGGTGGAGAAGACAAAGGGTGTCTCATTCAATTCTTAAAAACCGCTGTTTCATTCAGTTC-TTTTAATGAGCCTAGAGCTAGTCAAATAAGGCTCAGTTACTCAACTGACCAATCTACAGTAGGAAGTTTTCTTAAGTATCCTGATATAT--TGCATCAGGATAcgaaagaggaaaaagagctaTATCGGAC-AGCTTAAATCCTAACTGGTCTCTTAGAGGAAGTCAAAACTTGGATCCCAAATCCTGCATATCCAAAATTCCTTTCTTCTGTTATCCATTCCCTTCAAGCTCTAAGAAAACTCCATTTCCTGAGTTTATTGACTTGAGGTGCTTGTTAGAGGAGAAATGATCCAATTGATTAATTCACACCA----AGTACAACTGACAATCCCGATTAAAGTAATACTCCTACCAAGGCTACTTAAAATTTAACAGAAGATATCGTCTTTCTGAAGTGAATCAACCTCCggtgatagaatttcagaccataTAGAGACATACACTTATTGAAAGAGTTGCAAGTGTGACCTCTTAAATTCGTATTGAGTTTTGACAGCATACTTTATAGACAGTTATCATAGAATGCTATGTTTTATTTGTCTGGTGAAGAAATTTTCTTCAGCAC--AGTCACTTTCCTCAAGACAAGACCatgccttgtttatttttttagccTCAGACTCTAGCACAGTTCCTATTACAGAAAA---TCTTACAGTTTTTTGACG----------ATTGTTTAAATAGTTTTTACAGTT----ATTAAACTGTTACATGGACTGTATGAGattcaa--gaagaaaatgaagagatcagtttcttcttttctgtccATTAAATAATCCAAACTTCCTAAATTTTCTCTACATTTATATCCTGTAAGTCTCTATTACTGAGTTTGGAAATATGTCATTAACCTGTGACTCCCTTAAAATGCAAAGTTCCTGTTGAGACTTTGGTATATGGATATTTATGTGACCAGTTAATAAATTCTTACATTTGAAACATTCATGCATCAGGTCTATGTGTCAGAGGCAGACACAACTTGTCTCTTATCTCTTGTGGAagcctgtgtgtgtgtcacaGAGATTTCTTCCCAGGTGATATTCCTctgaattttc--tgttatttctccGAACAGTTATAAATCTTCATTTCAGGCTCAAACTGTAGTTCATGTGTACCTTTTGTAAGGTTCATACCCTCTGAGCTGGAGTAAGATTGTAAATACACAAAAGTTCAACGGGGATTTCTCATTTAGTTTTTAGTAGAGGTGAGAAGATTACAAACAGAAGTAG--GGAGAATACCTTACATTCAAAGTTCTCTTTTCCTAACTA---------AGATATGCATCACACTCGATCACTTATT---------GCATGGCCATTATGTGGCATATG-AGCATCTTTTTCTGTCAGCAGTTGCCTCCTTCAATCTGGTGGAGCTGCT-TCTG-------------------------------------ATTTGATCTGGTCAATCAGGTTAACCCCTCTCTGCTCTTGCGATTGTTCATAGAGGTGCACGTGACCCAAATGTAACCAGGTAAAGGCACGATTAGGGATTTTTCAG-ATTTGTTAAGAAAGAAACCTTGACTTCTCTTTGTCATAACTTGCTAAGAAAATGACACAAGCTTTGA--------------GATGTGTGGCcattatttgcaaaaataaagcaGGCCAATGACAAttgaagggaagaagagagaaaaggag------agaaggacaTTAGTCAAAAAGTTCAAAGAACTAGATCCAG-GGATGCCTGATAATT-TGataaattctctttta---ttttgttaaaattaattagAACTCATTTTTGTAACATACAT---AAAAACTCCAGAGAAACAAAGAA-CATGCTTTTACTTTATTTGCACAagtataaattatataaacat--tgaaagataaaaatgtatgtatttttagccattttaaaattatattttgaaacttGCCAGCTGAATCCATCGAACTGGACAATGTCCAATATAaactttgaataaaataaaaaataaaaaaatcaatttggtGCATGCTCTGTgctataaaacatgaaaaacattattttattttaagagtaaTTCCTGCATCCTTCCCTCAGAC---AAACAGTGCAAGTGATTCAGGATCAAATGACTTACGgtggattttaatatataataattggCTAGTAAACAACTTTAAAAGCAATTGAGGAAAATtgggaaagtaaaaaaatgattttacattaaaattaaaattatgctcAGTATAa------------atgagagaag--agagggagaatGTGACAAGA

a score=41609
s chr3           147117492 1111 + 160039680 TCATGCAAAGTAGAAAGC--TTTCTCT------GAGGAAGGC-----TGGACATAACTCTAGTTCTCTTCCCAACTCATGGCTTCTTGGATTGTGTTCTCAGAAAAGGCATGTTGACCTAGGAGATGGTTCCAGCTGAGGAGATGACAAAGCCATCGATTTAGAGTTGCATACATAGCTCCTGACCAAAAGCACTGCGCGCTACAAAACGAACTCAATTACAATCATCTCTCAATCATCAGCAATAAAAGTGTTGTGAGGAGAGCAGGTTACTAGCCAGTTTTATGTG-GCCAAAGCTCATAAATAATATGTGACTAACTCAAAGCTGCCATCCAACTCTCCCCACCCCCACCCCTGCCAGCTATAAAAGG-GTCTGTTTATAAGCACAATGTGATGAGTGTCATGTTAGGTCAATTTACTCTTT--AAGTTTATGGCAAATAATTATTTAGCAGATGGAATTTTCTGTAGGAGATTCCATTTACTTGGTTTCT------------------------AGAAGGTTGATTGTATTGAGAAATAACTTCTGGGATACTATTTGAGAGAGAAACACAGACTTACCTTATTCCAGAGGGAAAAGGAAAGATTGTCTAAACATCAGCTTAAGCCATACCATGTAGCAGGGGTGTGGGGAGGTAGGGGGTGGGGGGCATGTCTGTCCTCTACAAGGAAGTCTGGGTGAACAGAATAAATATTCAATGTGGCAACTCCAGAAGGAACCTCTGCTGTAAAGTCTGAATTATGAGGTGTTCTTGGGAAACATGTATTTTATCCCAGGCCAGGGCCAGCTGAGGTTGAGAAGTCAGTCTCCGGAGATTAGCGATTTCACTGAGAAGGCCTGGAGG-ACGTTTGCAAGGCTGGAGAGGGAGTGCACTCCGGTCTGACAGCTCCTGCCTATTTTCAAGGAACTATTACCCTTAACAAGTGAGGAAA-ACACTGTAAGTTTTGACATGCTGAAGGCCGAAATAATTCAAAAGGGTCTTACTTCCATGGGCTGAGACTCCAATAGCTACACTCTCAAAGTCTTTATAGATCTTTACCTAATGACTCTAAACACACAGCCACA--GAGCCCGGAGTATGCTCACGTGCATGTGCACACATGCATGTGCATTCATA-----TCAAGTGCATTTACA
s HiC_scaffold_1 133796957 1091 + 233722169 TCagacaaaatggaaaacaacTTCTCTAAAATAGAGGAAGGCCAGATTGGACACAATTATGCCTAACGTGGCAATTCATAGTTTTTT----TACACACTTAATGGAGTAACCTTGACCTGGGA--TAATTCCAGCCAAGGTTggaataaattaatttatttagaagTATATAC----TCCTTGGCCAAA--CACAATGTGTTAAAAAGAGAATTCAGTTACAATCATCTCTCAATAATTGGCAATAAAAAACTTACAAGAATAGCTGATTATTAACAAATTTTATGTGAGCTAAAACTCATAAATAGTATGTGAAAAACTGAATGATGCCATTAGACTATACCC--------------CGGCTATAAAAGGAGACAGGTTATAAGTGAGATGTGATGAGTACCATGTTAGGTCAATTTATTCCTCCAGAGTTTATGGCAAATAATCATTTAGCAGATGGATAATTCTGTAGGAAATTTCATTTAGTTGACTTCCTCTTTACTTACCCTATATTTCTTCATAAGCTTGAGTCTACTCAAAAATAACTTCTGGGATATTATTTGGGAGAGAAACACAGACTTATTTTATTCCAGAGGGAAAACAAAAGGTTGTCTACGTATTAGCTTAATCCATAAAATGTAGTAGCAGCAC---------------------TATGGCTATTCTCCATGAGGAAGTCTGCCAGAGTAGAATAAATACTCTGTGTAGAAACTCCAGAAGGGACCTCTGTCATGGAATTTAAATTATGAAGTGTTTTCAGGAAACATGTATTTTATCTGGGGTCAAGGCCAGCTGGGGTTGCAAAGACAGTCTCTCATGATTTGATATTCGCCTGATACCTCCTGAAGGAATAGTCGGGGTCCTGGAG-GGGTGTGTGTTCTGGGCTGACAGCTCATGTCTGTTTTCAAGGCACCATTACCTATGGCAGGTGATGAAACACTCTGTGGGTTTTGACACAGTGAAGGCTGGAATAATTCAAAAGGGTCTT----------GCTGAGGTTACTG----TACTCCCTGTGAGGGTTCACAGAATCATACCTCGTGTGTACAAACACACAGGCATATGGAGTCAtga--------acacacatgtgcatacacacattgGCACACATATGTTCTCATGTGCACTTGCA

a score=4057
s chr3           147117993 78 + 160039680 AACTTCTGGGATACTATTTGAGAGAGAAACACAGACTTACCTTATTCCAGAGGGAAAAGGAAAGATTGTCTAAACATC
s HiC_scaffold_1 133796158 78 + 233722169 agcttCTAGTATACTATTTGGGAGAGAAACACAGTGTTACTTTATTTGAGAAAGACAACAAAAGACCACCTAAGTTTC

a score=19784
s chr3           147120221 811 + 160039680 AAGAATAGGAAGAGAAAAGCAGTTCCTTTAGgaa----------aatttactgaaaaataaaatatcccaaagaggctatgtcacttgagtg-gctgaag-attgttaatc-----------------acccattgttccctgtgtcctaaccccag-gggccacccagtagggtgaaggcttgtgagatagagtctaccatttattgaaaataaagaaggtcccttttctccgcacatctggtgtgttaattgcaaccctcctaACATAAGTAATACCTGCAGCACAATTTTAGAGTCCCTACTGGGACAAATGCCATTTCCAGGGTCTGTCATTCTATGGATCCAGAAAAAGCTCCACTAAGTAGAA-CTGTGAATGCAACCCTATGTCTGTCTTCTTGCACACCAGAACCACCTCCTCCGTcccacccccaccctcacccccaccccgaccccAGGTTTGGGCAGTGCATGTTCTGAAAATG-TAAATGCATTTTGGCTCAGGTTTTCCAATCCGAGAGCTGAAGAACCCAGTGGTGTAATGGGAAGCTCATATGCAAATCGGTACC-AGGTTCTCAGGATATCACATCTACAATTGAAGCTTTAAAG-----GTATTTGCTTTCTTCCGATAAGGGGGTAGAGAAGGAGTCACACAACAATGGGAAAGAAGGATGACAGAGTTCAAGTCAA-----------------CATGGACTCTAGG--AGTTCACTCAGAAATCAGAACAGAGATTCCCAATCCATCAAGAAAGGTGGGATGGAATGTGTAAAAAAAATCCTTCCATGATGGAACACATATGATTCATAGC-AAGTCAACAAGAAGTCGTCTTCTTGTCTTTCCTATCTC
s HiC_scaffold_1 133803302 802 + 233722169 aaaaaaaaaaagaaagtagcagTTCAGTTGGGGAGTGAACTTTGAATTGAttgaaaaa--aaataccacaaacaggTTGTACAACCCAAAAGTGCTGAAATATTATTTATTGGTAAATTTAAAGTTAGAGTCTGTTCTCCCTACTTCCTAGCCCCAGTGAGTCACTCGTCATGGTGAA------------AAATTATATCActtatagaaaataaagaagcTAT-GTTTCTTTGCACATATGGTAGGTAAATTGTGACCCTAACAACATAAAGAATATCGGAGGCAC--TTTTAGAATCCCTACAGGGACAGATGTCATTTGCTGGACCAGTCATTCTCTGAACCCAGGAAAAGCATCACTAAGCAAAGTCTATTGCTGCAACCCAATGTCTTGCTTCCTTAATTTC--AACAGCCT------------------------------------CCCATGTTTAGTTGATGCTTgtcctaaaaatgaaaaatgcctTTTGGCCTGTGTTTTCCTGTAC---AGATAAAGATCCTAATTGCACCATGACAAGCTGCTACATAAATCTGTGTCGAGTTTCTCATAATATTATATCTGCAAATGAGATCTTTGAGACAGTGTTCTCCCTTTCACCTGATGATGGAGC--AAAATGCTTCATTGAAAAATGGTAAAGAAGGATGATTGAGTTCAACTCCAGCCTGAGCATCTGAGTTTGTGTATTTTAGGCAAATGgactcacaaaacaaaacagaattttcaaaaaCACCAAGA----TGGGCTGCAACATCT-GGAAAAATCCCTTTGCAATTGAAAGCATATGATGCACAACAAAGGCAACAacaaa--attttcatgtttttactcTTTC

a score=34023
s chr3           147121652 909 + 160039680 ATAACTAACCCAGGCTTGGCAAACTTAAGCAAGTCAGAAAAAAAGAAATCAGA-------GGCGGTTGGGTTAGGAATAAGTAGGTCTCACCCACATCTCCCTTTTACTTGTGGCTCC-----CCTGTTTCCAGCATACTCACCAGAGTTAATATGAAACCTGTGTGTTTATTAGCATAATAGTTCCAGGTAAGTC--AGGCTACATCGGCCTCCTGTTTTACCTTTTACAG------------GTTTAGGGTAAGCAGATATGCATTATTCTTGTTAAAACT-TGTACAAAGAAAAGAGAAGTCATTGTTTTCAGATGTAATTTACAAAGCATTCCTCTTAGGCAGGAATCTAAACTGTTGTTGAGGAATTCACTCTTGGGAAGGACTTCCTCATTTTCCTCTGTAATTCAAAGTACGAGACTGTCGCTTCTGTCCTTAGGCATTTCAGTAACTTTTTCCTCTTCAGACCAAGGTCAAAAGGCTCCCGTTGTTAGACT--CCAAGAAGGTG-TGAGAATATACGTGGCTGCACACCATGCATATTTATGCTGCACAGCCATTAAAGCAAATATAAGAGGGATGAATTTTTAAGAACCGAGTTAAGACTGAAAAAGAGTTGT---TTGGA--CATTGTCTGTTTTATACTTTTATGAACTTACATAATGCAGGCGAAGGGAGAGAAAATACACTTAGTCTTGCACCTGAGCAAACTCCTTACGAATAAAAAGTCTAAGA------------GTAAAGATATAAATATCC--ATAAAGATGGCGTTgtct---tcccttatctgtagggt-ttggtgccaggaccatgtctatatccaggcccttatagagtcaagtctcttatataaagcagtacaggattcgcacagaacctatacacaacatcctgtttactttgaatcatgtctagattacttgtaatacttagtataatgtgaatatg
s HiC_scaffold_1 133804208 943 + 233722169 ATATCTAATAGAGCTATTACAAATTTAAGGAAGTTTGAAAAGAAGCAATCAAATATCTTGAATAATTGTATTAGGAACAGGTCAGTTtcattgaaatgttatttttatttgtggttcTTTTTTCCTGGTT---GAATATTTACTAGAATTAATAAGAAGCCTTTGaatatattaacatatttattCCAAGCATCTCTGAGGCtgtagacattttttatttta--tttcacagcatCTCTATAGGGTTTTTGGCAAGAAGATAGGTATTATCCTTGTTAAATCCACCTACAAAAAA-------GTAACTGTTTTCAAATGTAATTTACAAAGTATATCTGTTACATTGGAATCTAAA-TGTTGTTAAGGAATTCTCTCTTGGGAATgtgtttttccctttcctctttaatTTAAAGTAAGAGACTGTCAATTCTGTCATTAGTCATTGCAGtgactttttcttcttcagaCCAAGGTCAAAAGTCTCCTGCTGTTAGTCTATCTATGAAAATGCTTGAAATATACACAGCCGCATATCATGCATATTTATGCTGCACAGGTATTAGAGTAAACATAAGAGAGATGAATTATTAAGGGCAAAG-TAAGACTGATGAAATGCTGTTAGTTGGAATATTTGActgttttatacttttaatgGCTTATATGAAAGAGTTGAAGGCAGAGGAAACAAAGTTAGTCTTGCTACTAAGCTAAGTCCTTAAGAATAATAAGCCTTAGGTGTTGGGGatgtgaaaaaatataaatatgcagaTACACATACAGTGATACAGATATAGTGTCTGTGGGGGATGGGTTTTAGGACC-TGTGGATACCAATATTCTTAGATGCTCAAGGCTCTTACATAAAATGCTATCGTATTTGCATAAAACCTGCATAGATCTTCTTGTGTACCTTAAATCATGTCTA----ACTTATAATACCTAATTCAATGTAAATGTG

a score=259975
s chr3           147123514 9829 + 160039680 [encoded data, 10503 characters]
s HiC_scaffold_1 133806430 9613 + 233722169 [encoded data, 10503 characters]

a score=53616
s chr3           147135871 2669 + 160039680 ATCCAGTCAGGGAGTAACTTTATATAGATTTTTTTTTTCACTCAGAAGTATCAGTAAGTGACATGTTGT-AGACTCACCACAATAAAATATAAGCAAAGTTATTTTATTTTTGCCCAGTCATAAAGAACCAGGCAAGGCATTGTTGAGAAAGCACTTTGAGTCTCACAGCAATAAATCACAGGACAATCTGGAATCAAAGCTCACAAATGAGATCTGTGCACGGAGGCCCAGATCTTCAAAGG-CATCGAA---------GAAAGCATAATAATGGGGACCCTGGGAAAAGGAGGCGTCCACCTGCAGGCAAGCATTTAAATATTGCCTT-ACTGGATACATCTGCAAATGTATTCATCACCCAT-------------------GCATATGACAGCACTGATCAATCAGGTTTGTAAAGCAAGTGTGTGTCTATTCTTCATGTTTTCACGTGTTGTCATTTCTATCTGTTTAATCATCCAGTGATGAAATGAATCAGATTAAATGATTTTTTTTTTGCCTCATTTTACAGAG-------------CTGACTCTATTACCTAAGGGGTATAGATTGGCTAAGGTGTCTTTCATTGAGAAAGTATGAAATTTTTAGTTCATA---------------------------GTACAGAACat---gtacctatcttttaa-----------------tccattcatctatctact---------------------------------------------------------tatttacccatccat-----ctaATTAcct-----------------------------------------------------acctgcctgcctgtcta--------------------ccttcatgtctg-----cctttctgccta-----------------ccGATCATCCTTCT---TTCCTACCTTTGTACTTTT----CTGTGCA----------AGCA--------------------TGCATCCATCTG-CCACTTCTTTGTATGCATGC--ATCCATCTACCTACTTATTT------------CTT-------CTCCCAT------CTATCCCCT------------TGT-------TCAGGTCCCTGACAGTTTCAA-TATTTTAGTAGCC---------------------------CTGGTCATAATAACTTCCAAAGAGTGCATGTGCTATAACTCAGGCTTTGACTTGG--ACATG---CTTAAGACGATCTCAAACTCTTC----------TATAGATACTTATTTTA-AACTAGATGTGTTGTTAACTATTTTGTGGCCCAAACCAAAGCAGACTAAATAA----AGATGAA-------GAAAAGGTCGAAGTGATGTGAAGTATCTATCACTATTCTCACAGAAGG----AGTAACAGTTAAAAAGTAACTGCAGAAGGAGAGGAAGCAGTTTCTGAACACTTTCAGGGTAGTGATAAACGG--TGTCCTGTTGCAAAGTGCTATATAATAACTAACATCCACTCTTATCCTCTCAGAATCATTAAAATGTTAGAACACTGTCAGCACATAGATGGGAGCA---------CAGATGGCCTATACTG---------------------ACTATG-------------------------TAATCTTCTCAGTGGTCAAGGGTTTGGAAGTGAGAAA--TGAAACTTTAAAGGCTTGAGCTTCCTCTCTGAGCTCACGCAGACACCAAGAAATGTGTGATCCAGGATCCAAACTTAGCTCTCCCTGAT--GGAAACCTCT-CCATTTAGTCCAGTAT-CTATACCGCTTGAATGAGGCCTGTCACAAATAGTTTAGGGGAaaacagacagacagacaaacaaacaaaacagaaaacaaaaaaaGCAAAACGTCCTCGGTGCCTAAGGGTTG--TCTGG-AAGCTGAATCAAGCTTGTTCTGTCCACTCTTCCTCCAAAGGCTGTGCATAAAGATAGTCACCTCAGTGAAGTT-CTACTGAAAGAATGATCCATTTTCTGCCAGACA-CAGAGGGCGCTGTCAAAC-AGCTGGGATTAGCGTCAATAGAATGGGCTGTTTGCTCTGTTGCCGAGTTTCTCTTATCT--------------CAGTCACTGCTGCTTGGTGATTTCCAGGGATGTTGAAAGCGTTATGTTTGAAGATAAAAGGGAGTGGGTTGCTAAGAAGCTGGTTTGTTTCCTTATATAAAACCCCATTGTCTCTAGAATCAGATGAATCCTTATATGCAGCCCTTCTAGCAAC----ATATGGCTGAGATTTCTTCAGTAGATGT-TTTCCCTTCCTTAAAGCACAGCAGAG-----TTCAGCCCTCTTCTCAGGAGCACTTGGCCA-----TTTTTTGTATCTTTAATTCTT----GTCAGGTGGATCCTTGCCTGCGTGTTCAATGCCTAATTACCCAGTCTTCCTCATCACTCAATACTTTTATGCTTACTATTTATTAAAATCCCCTTTGCAGCGAAGCAAAGCTCATCTACTATCTGAAATCTAATTTCCCTGACATTTTGTAGATAGCAGTTGTGAACTAATAATATACAGTGCTATTTGAAATCATCATTCCTCACGCTATA-TATAAAATTAATTTTTCCTTTTGATTTTTAATGTATTTCTCTTATTCTATTCAAAGAACAGTAGGGTGCCTTGCCAATGATAATTTTGACCA-TCTTCGGTAAATTGCTGTTCAAAATGGACCAAATGGTGTTTT-TATGATCATTTCTATTAAATTTCCTGTGATATCATTTATGGATTAAAAGATAACTA-ATG-GGGTAAAAATAAACTCAGAGGAACCTATAATCAAAGATTTATTTCTTACTCAAACAGGAGTGAAAGAAAACTAATTCATCTTGCAGAATTAAGAGTAAATATCGACCAGAAGATTCCATTGTTCGATGCTTGAGCTGAGCTTTcaagacctggcttgtccgctcccctctgtagtc---ccagtgccaagctccacaa--tattttaaggaacatatcagagtgcatcatttttaaaatccaaacaataaagcaaacttttaggtcaaataaaatgtttt-ttgaataatattactctattcattcttatagcaaggcaat
s HiC_scaffold_1 133816245 2964 + 233722169 ATTTAAACAAAGAGTGACTTTGTTTAAATTT-------------GCAGAACCAGTAAGTAAAATATTGTTACATTTAATACAATTGAAAATAAACATAGTT---TCGTTCTCTCTTACTAGTAAAGAA---GGTATGGCGTTGTTGAAAAA-TACTTTGAATATCACGGTAATAAATcacagaacaattcaga-tcaaAGCTCACAAATGAGATGGGTACACAGAACTCTGTCAGTTTAAAGGATATcgaaacaacaacagcaaaaataacaaaagggaCCTTAAAAATAGGAGCTATGTACCaagagtaaacattttaaattttggctTCAGTAAATAAAACTGCAA-CATATTCATCATCcactttttttaaagactgaaaaatatacaATAGCATTGATAAGTAAGATTTATAGGATACTTTCATGtctgtttttcatgtttt-atgtCTTGTC---------TGTTTCATAGCTCGGTTGTAAAATAGGTCAGATTAAGTGCCTTTTGT----CtctgttttacagatgggaaacCAAGGTTTGACTCCTTTACCTTTGGGATACAGGTTGACTAAATTATCTTTCATTATGataatttggaaattttaattCATACCTGTTTTAATCACTGTGTCGttggtgggacaaaataccccacaTTTACAATTTAAGGAGGAGCGGTTtatttttggttcatgttttcagTGCATGGTTGGTGGATTCtaaggcagaagcagcatggtgaAAGGTTCTGGGCAGAAAACAGTTGCTCATCCACAGTGGCCAGGAATCTGAGGATAAAGGGAGAAGCTGGGGGGAAGAGACAACTTTCCATCACACCCAGGGACCTGTCTCTTTGTCCAGATCCCACATCCTACCAGCACATTCAGCTCTGAACTCCCCAGCTGATTAATTCATTGAGTGTGGTGtcaatcaccttcccaaagccccactttTAAACACATGAGCCTGTGTATCTAAACGACAGCAATACCTCATTATAAAACAGGTCCATCTATTTATCCACCTGCCTGCCAACCTGTTTACCTATCAGCCTACTTATCTAAGATGGACTTGCTTACAGTCACTCCCATGCCTGCCCATCACCCACCTTCAGTGTATGTCTAAAAGTTAGCTCTCTGACAGTCTCAACTGTCCTAGCAGCCTGTAGATGAGACAGAACCTCCTCAGCACCGGTTAAAATAACCTTCACAGGACACATGCGCTAAAACTT-GGCCCTAAATTGGCAACACGTCACTCTTGGAAGTTTCAAGTTTTCCATGTTGAACCTGTGGACATTTGTTTTCTAACTAAACACAATGCTAGAAAATTTGTTTCTAAGAGGAGAGCAGATTAAATGAGATTAGATAAATGGCAGGGAGAGGCTAATGGTAACCTAAATTAcctgaaa------gcaaagaaaatataaagaacaattaaaaaGTAACCACAGAAGTACGGAAAGCGGTTT-TGAACTCTTTTATGATATTACTAAATATCCTGATCTGTTTCAAAATGTTATATAATAATTAATACTCATAGTTATCACCCCTGAattattaaaatgtcaaaataagGCCAGCATCTTTAAGGGGACAAATTTATTATAGCTGACATATATTGGATATCTACTTTGTAGCCAGAACTGTGAGAAGTGCTTTACATACATTATCTTTAATCCTCTCAACCCTCAAggttttagaaatgagaaaaatgagacttCGAGAGTTTAAGCCACTTCTTTAAGGTCATACAGATACTAATAAATGTATaagccaggattcaaactcagattttccttATTGGGAACGATCTGCTGCTCTGTCCACCATTCCACACTGGT------------GTCAAAACTGCGTCAGGTTAAAAAAG----------------------------------------------------TGCCTAAGGTTAGAGTTTGTTAATTTGAACCAA------------TACTGGTATCACATAAGTT------AACCACACTAACCTTTGTGAATTTGTTGAGGAGAGAAAGGTATGTTTTCTGCTTGACAGCAGCAGGATTTACAAAATTAATTGGAGTGTATAGCAGCAGAACCGACTGCTGTGTGTGTCCTC-AGTTTCCTGAATCTGGTAGAGACTATTGTAGCCATTGCTGTTTAACAATTTCCTGAAAGGTTGGAGGTCTCATTTCtacactgaaagagaaatgacTCACTAAGAACAGACCTCATTTCT--------AACAACTGCATCTCTGAAATCATATTTATC-TCATATGCAGTACTTCCCACCACTCATAAATGGGGAAGATTTTCT-ACCAGATGAATTGTCATTCTTTAGAGCACAAAAAGAATAGATTCAGCCTTCTTGCCATG--CATTTAGCTAAGCAGCTTTTTGTGTCTTTAATTCTTTGATGGCAAATGGATCA----CTGCATTTTCAATACTTAATTACCGAATCTTTATCATCCCCAAATACATCTAtgcttaatatttattaaaacctTTTTTTCAGCGAGACAAACCTCATCTACCAACTGAAAActaattttcatgaaattttatAGATAG---TTAGGAACTAATAATACACAGTGCTGTTTGAAATTATCATTCCTTGTGCTATACtccaaaattaatttttccttttgatttttaatgtgtttCTCTTATTCTATTCAAAGAACAGTAGGGTGCTTTCTTAGTGATGATTTTGACCAGTCTT--GTAAATTGCTATTCAGAATGGACCAAATAGTGTTTTATACAAACATTTCTATTAAATTTCCCACGATTTCACTTGTGGATTCTCAAATAACTacatgttagaaaaaataaagccaaagaaaTATATAATCAAATGTATTATACTTActtaaaacaga-taaaacaaaccTAAATCAGCTTATGTaatt------------------------------------------agctg------------ttggtttgtctggTAGATCCAGTAGTTGCAGCAGTCTTGGGAACCAAAATGTACTTTTAGATGtacaataaa---tgttttcttcaaaagctgAAGGATAAAATCAACTTTTAggtca---aaaatgttttaataaataacattaatattttcatctttattgcAATGCAAT

a score=77440
s chr3           147141351 4700 + 160039680 [encoded data, 5278 characters]
s HiC_scaffold_1 133819926 4765 + 233722169 [encoded data, 5278 characters]

a score=72008
s chr3           147153519 3637 + 160039680 TAACAATTG---TGTGGACAAACTACAGCTCACACATTTGTTTACCA--CAATGCAGAAATGAAAATAGGAACTGTTGCTATCTGTGAAACCGTGAGTGAGCGGCCCAGATGAAAGGCAGGCTgaaagcaatccagatgtgagagagcagttactgatggcattaaatgcagttcagggagagggcaaactaacttatggggacagaaataaaaacacccatcatctctgcagga---gaatattgaatctgaaagggcattcgggaggttttgtt---------------ctacatcttgatcttgatagtgttcacatggtatatacataagcatctactgacctgttgct-aagatatctgcatatattgtgtgtatattataTATAATATACTCCTGTATTACATATATTATACACACATACACACATATTATCTAAATAGCAAGCAAAGGTATCTGGAATTAAATCACATATTACAAATTACAAATTCTCACTAATATACAAATTCCAGA--CCAACTCTAGCTTTTGTATTCTAACTCTCGTGTAGATACCCCCATTCCAGTCTATGGCAGCTTCCTGAGAGTTCCAAAATG-TGGCATGCAATTCAAAGCCAGCCAGTCTGTGGCTGGGCCAAGAACTTTACTGTGCCTGTAATGAAAAAATAATGTATACCAGATCACTCACTCTGGCAGGACTCCCAGCACGTCCACAGGATGGAGTGTTACACCATACATAATTTTATATAATGTCCTACCTGTCTTTAAATACCTTTGGCCTTGTCTTGCTCTGTCATTAGAATTGTGTGTTTCTCTGCCCTCACTCCAATCACTGCTTTATCCAACCAGAGGCCTGGGTTCACATGTTCAACCTATGGCTTTACTGGTAAATTATTCAATGGGCTCTGCACACGTT-CTTCCTGTCTCCATCCACAGTATTCATGCTGTGCTCTCCTCTCTGAACATTGCTTAACCATCTGTTAACCCAGTCTTCTGCCCAGGGGAGGTAGTAGGGAGGGATGATTTGAAGGTTCTGCAGAAGTGCTTTACAGTTGGGGATAGTCCATTAATTGTTGATTTTGTTTGTATTCAGCATTCTGCTTCTATCTGCGATTTTAATTGATGCAAGCATGCCCAGGGGCTAATGTTGAGCCCAGCTGCATAaaacaaacaaacaaacaaacaaacaaacaaaca---aaATAAGTAAAGGATGTCTCCCCTGGAATAAATAGATAACACGGCTTTCTCAATCTTGAGTTTATTTCAATAGTGCTCCTGTGTGTGCCTTGCAGTGTGAAAATGAGGGGTGT-TCCCGAAGTTACAGAAACGCGTAATAAGCATCTACAGCTGAAGATGCAACCACCTCACTGCTTATATCCCTTGCTCAATTCTTCTTGGTATGTATTACAAATGGACTGGCAAGGTCTCATGGCTTTCACTCCTATTTTCAGCATGGTGGGTGGCTTCTCCTGTCTCTGCTTGTTGCTTTGGAAG--ACCGTTGCTTTTAGCCTTTCTTTAAGATCAACCATGCAAAGCCAAACCAAGCCAAAATAAAATAAAATAATCCAATGGAAGGAAAATGAAAATGGAATG--AACGTCTGTGGGGTTGTGGGGACATTTCCAAATTGT---CCTTCTGTA-----------------GGAGAAGGGCTGGCA--------------------------------------CTGCTGCA-ATGATATGCAGCCTACTGCCTGAGTGCAGACCAGAGAGGGGAGAGGTGGGCAGTTCAGGGCTGCAGGGTTCTGAACGAAGACTGGGGGTGTGTTTCTAGATTCCTTGCTGTCCTGTGAGAATGAGGTGTCCAGGTGACAGTTGCTTCATGAACTCATGGACCAGAATGAGAAGTC----TGGCCAAGAGGAGATCAAGCTGGAACTG-GTTGTAGCTAGGCATCCGTCAACCCTCTGAACTGGAGGGA-AGAGTAGAGGATGAT-TATAGGGTCTTGCAATTTGGA--TTGTTTTCTCCTG-------------------CAAGGGCCATGGCTTCTGCAAACATCCAGAAGTAGTTATCATAAAAGCCC--------------------------CAAGTTAGTGGATTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGAGGTTGGTATGAGATTTTATGGGTTTTTGCTCTCTTGGAATGGGCCACATGTGTGTCACAAATACTGGGAATAGATTAAAGGTTTCGAGGAAGGTCCTGAC-------------------TAAGCTGACTGTCTTATGTCAGAAAGGcaatttagcataatataaagaagttgagctttgaagtctggaagacatgagtttgaaacctggccctgccacttactgattgtgtgaccttgggtcttctacctccattaacttatctgattgaacacaaacagtcctgctcatttcttagggttaaatgagattctatctatgcctggcacatagttaagggtcaaataatgttcattactCTCCAACCCCTGAGTTCCATAATCTAACCCACCTTCTATGGAGCAAACTTGCGAATATTTATATAACCTTATTCAGCCAC------TGTGCGGTTGGTTCTTT-------GTGTATTGCATTTTCTCTGGCTGGATGTGATTCCCCAGGCCAACCCGTGGCTGCCTCTGCAGAAcctaattccatcacctaatgtgtttactataacacccagctttgcttcaacctcaaatttgatcagtatgttgtccatttcctcgtcttaattgctaataaatatattgcaggTGTTTCATTAGACAAGCTTTCAGAGTCCTTTGGAGTT-TAAGCATATATATATATATATACCACAACACTCAAATGTTCAAAGAATATGTAGGGttttttgttttttgttttgtttttggttttttttttttttgCCTTTTATTTCATTTGCAAGAAGAGATCTAATCTTCCTCGTGAGGTGCCCACCCTAATGTGTTGCAGGTAAAAATAACTTTATTTTACGTGTTCAtatgtatctgtgaggcatgtggcaccagagggaaatgttagatttctttccttggacccatgcctcttttttgagatagagtctctcaccagcctggtgctccctaatactacagcgagcctcagaaatccatctctctaacttagcagtattggaacacacaccaacacgcctggctttttatgtgggctgtgtggggaatcaatcttaggtccctatgtttgcacagcaagccatttactgactggactaccttgccttgccccCAAATAACTTCATTTTAAACTTTCCAATATTTCGTATTTTCAAAAGCTTTTATCGCTTGACAGAGTTAGGTTAGA-AACTTGGGGGTAGAAGCTGC--TAATCTTA--GGCTAAAATTTGGACATCTTTATTGCATTTTAGTCGTTGGTTGGAACAACTCTGGTCCCACCCTCTGCTACTGTCCAGGCTGAAGGTTTTGGTACAAGTAAGTCAGC-TCTGTTCTCTAGTATGACTAAGAACATTGGAGAACTCAGCTATATCCTTTGTGGTCATGGGCTCACACTTACCATCTGGGCCTTGTAGATCCTCCAAGGACCGGCTCTGATGTCCA-GGGGCTCTGCTTTGGAGGTCTAGGCTGTAGCCTTTGGGGACAGAGCCCTTGTGG----ACCTCTCAGAATTTCACTCTAGGAAGAAGATGCTGAACTg---cacagactt--ggagtcagttgtgcagctgtgataaaccaaccattccatctaccagctgagtgacctctgcggagctacttaacataatgctggtctcccttggctcatct
s HiC_scaffold_1 133826179 3630 + 233722169 taacaactgaagGATGAATAAACTGCA----ATATATtcatataatagaaaataaagaaacaaaaataagtactATTGCTATTTATGAA--TGGGTATGAATAATCCAGATGAAATGCTAAATGAAGAAAAGCCAGACATAAAGGAATGCATGCTGTAAGTCATTtacaaagtacaaaaacaaacaaaactaactcACACTGACAGAATTCAGAAGAGTGATTGTCTCCG--GGACTGGGATGTTGACTGTGAAAGGGCACAAGGGAGGCTTTGTTGACACTGAAAATGTCCTATGTCCTGATCTTG-TAGTGTTTACATCATGTACAAGTAAAACTTTTTTGACCTATGATTTAAGATTTTTACACGTACTGAGTATACAT-----------------------------------------------CACATTttcacaacaacaa--aaatgttgtAGGATTTTTCTCA-ATCTCACAAAATACA--TTCTTGCTAATATA-AAATACCAGGGGTCAACACTGCCTGCCATAGCCTACTCCCCATCT-GAAGGTTTCACTCCTGTCTCTAGCAGCTGCCTGCATGCTCAGGTGTGGTAGCATATGATTCACAGAAAGCCAAATTGTGAGCCAGCCAAGAACTTGATTATGCCTACAGTGAAAGAATAATCCAGACCAGATCACACACACTGGCAAGACTCCCAGTAAGTCCAGAGGATCAAGAGTTTCTGTacacataattttatttaatgtccTACCTGTACTCCACAAATCTCAGCTTCTCCTCCTTCCAACATTAGA---GAGGGATTTTCTCACCTCTGCTAGATCATTGTTGCATCCACCTATAGCCATAAATTCCTACATTCAACCTATAGCTCGACTGATGAATTATTCAgttgatttttcagtcttttcttcCATCCTCCATCTACAGTGCTAATGTTGTATTCTCTTCTCTTAACATTGTTTAACCATCTGTTAACCCAGGCTTCTGCCCAAGGGGGTTAGTAGGGAGGAATGATTTGAAGGCTCTGCGGATGTGCTTTACAGTTGGGGATAGTCCATTAATTGTTGATTTTGTTTGTATTCAGCATTCTGCTTCTATCTGTGGTTTTAATTGATGTGAGCATGCCCAGGGGCTTGTGCTGGACCCAGCTgtataaatcaaataaataaataaacaaagaaacaaataaataaataaatgaaatacatctcCCTTGGAATAACCAGATAACACAACTCCCCCCA-------------CCAATAGTCCTTGTAAATGTGCCCTGAGGCACATATGAGAGGGATGtatccaaaatttaaagaaataaataataaacatccGTAGTGTATGAAGCAATCCCATAATTATGTAGACCCCTTTGT---TGTATCATGGAATCTACAATGGAGGGATTAgcaatat--------tttcattcttat-------------------ttctccTAGACCTTTATTTTAGATTAGTTGTCATCGTCTCTGATAG-TTTTTTTGAggattaaaca-------------------aaaacaaaatgaaacatttaaaagggAATAGGAAATCAGTGGAGTGGTACCATCCACAGGACATTCAGAAGTTTTAAACACTGGTTATCTTCTGTAGTGAGGGTGGGGTGGGTGGAGTGGGGTGGGCATGGGGGTGATGGGGTGTGGTGTGGGGGAATGCTAAAATCTGCTGCAGGTCAGATGCAG---GCTGCCCAGCACCCAGCCAGGGAGTAGAG-TGTGAGCACACTTGGGCTGCTCAATTCTAAACTGAGGCTGCAGatactcttgt--ttttcttgtcattGAATGTGAGTAACATGGCCAAGTACTGGT-------TGAACTTTTGACCCAGAGGGAGAAGCAAAGGGAGCCTGATGGAACCTGATCTGGAGCTGAACCACAGCTGAGCCACTGTTAACACTCTGACCCGGAGTGAGAGATCAAGTTGTGCTGTCTGAAATCCTGGGATTTGGAGGTCATACTCTACTGCAGCATAAGCCACCTAACACAGGGACCATGGCTTCTGCACATTTCCAGAGACAG-TGTCATCGAACCTCAGGTAAAATGGGTCACTGTCTTTCTACCAGTGAGTGGGCCATAGATTTCTTTTGTAAAGCAAGGGGAAATTTTCTATAgcttcacaaattccacagatttgcAAGACCAAAATCACATAAACATTCACAGCTTCAGACTTCAGCACATCTCTTTCGTGAGGGcctgcattctatttctttgagCATTTTCAGTTATGCTTATAAATCTCTTTATGCttttcaaaaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaatcagTATAAAGATTTTTGCTGATGGATGGTGTCAGAtttcct--gcctctacctcctggGGTTGGGCCACACTTCTGTCTCCAGTACGGGGCGATGAGCTAAGGTTCAGAGGAAAGTTCTGACTATTGGAATCATTTCCCCTTACACCGATCACCATATGTTGGGAAGGCTATTTAGTATAATGTAAAGAACCTGAGCTTTGAAGTCAGACAGACATGAGTTTGAAATGTGGCTCTGTCACATTCTAGCTGGGTGACCGTGGGCCGTGAGCCTCCATCTCCTTATCTGATTGAA-AAGGATAACACCATTCACTCGTTAGGATTAAATGAGATGGTATCTATGCCTGGCCCAGAATAAGGGCTCAAAAACTGCTTGTTATTCTTCAA-CTGTGGGCCCCATAATATAATCCATC-TCTCTTGAACAAACTTTCAAATATTTGGCAACTTTTACACAGCCACAGTTCTTGTGCAATTGGTTCTTTTTACCTCGGGGATTG-AGTTTGTCTGGCTAGGTGCG-CTCACTGAGCCAGCCAGTGGCTAACGGTTCAGATTCTAAATCTG-CACTTAGTG----CATTATA---------TTTGCATCAACCAAAACCTTCATTAGTATGTTGGCCATTTCTTCTTTCTAATTGTTAATAAATATACTGCAGGTGTTTCATTAGACAGGCTCTCAAAGTCCTTTAGAGTTGTAAGCTCATGCGTATTCA-----CACAGAACGCAGATGTT-AAAGGATATGtag-------------------------------tttttttccttaatttctagT-----------AATATACCCAGTCTTCCTTGTGAGCTGACCATCCTTCTATACTGAGGGCAAAAATAACTTT----------------------------------------------AAacttccaattt-------------------tctgtttt------------------------------------------gctagCTTCAG----TCATTTT-------------TATTGAAATCTACCTAAA-----------------------------GGTAGTAAATATTCAGACTTTTGGCTT--------AGCTTTTTCCT-----------CCTGCTCTTCTTCAAAATGGTACCTGGGTAG--TTTACATGATCTTGTAC--------------------------AGTTAGGTTGGGTGGTTTGGTATTAGatgctgtggtggtggtggtggttaggGATGGGATATGCGTA-------------------TGTGGCAATTCTGGTCACATCCTCCAATGCTGTGTAGGTTGAAGTTTAtggggaatgtaactcagtatcTGCCCT---GTGTAGTTTAGACCCTCAGAGAACTCAGCCATCTTCCTTGTGAATGTGGACTCACGCTTAGCACATTGGTCCTGTA------------ACTGACTCTGATGTCCCTTAGGCTTCACTTTGAAGGGATACTCCATACACCTTGGTCCTAGGTTACTTGCTTAATCACATGGTAGATTTTCAGTT--------AAATTCTAGATTTTCCCTCAGGCCTTGGGACTAAACTGCCTGGGTTTGAT-AGCCAACTTTGCCACCTACCAGTGGAGTAACAC-----AAGCTGCTTCATGCAGTGGTAAT-TCCATTTGTTTGTCT

a score=22289
s chr3           147157153 466 + 160039680 tctgtGCCCCAGTTGTCCAGATGGTTGGCTGTGACAGCCCTTGAGGAGGGGC--AAAGCTCCATTTCTAGGAATCTTCAGCCTTGCATTCT-TCTGTTACCCTGTCACCCCC-TTCCAGATGGGAGCCTGCGGTCACATTTTCCCCATGACCACTTTTCATACTGTCTCCTAATCTTTTTCTTCTACAGTAACCAGATGGGACAAGCTTCCTTCTTCTATCTTTCTGGAAAGCACCCCCACCCCCTTAAAACT--GTTATCTAGCGCCTCATGTCTGAGACTGTTTGTTTGTTAATGGAAACTTAATAACATTATAATTCTTTTATCTACCCACAGAAATTTGATTCTCCAGTCTATTTCCAGCCTGTCAACTCAAAACAGGACTCAGCTTTGAAACGATGCAGAATGATGATCTTCAAGTGGATAAGTAGCTTTGACTCAGTGAGGGGAATTTATGAGACAACTGGACATA
s HiC_scaffold_1 133830172 464 + 233722169 TCTGAGCTGCAGTTGACCAGGCGGCTGGTTGGGACAGCCCTTGAGAATGGGACAAAAACACCTTCTCTGGCTGTCTTCAGCCCTGCCCTCTATCTACTGTCATGTTATTCCCAGGCAAGATGTCAGCCTGCAGTCACACTTTTCCCATGGTCACCTTTCCCCTGGAATTCCCAT-TTCTCCTCACACAGTGACCAGATGGCACaagctttcctcttctcttccactGCAAAGCATTGCT-----CTTAAAACTCTGTTATCTAGTGCTTTATGTCTGACTTGGTTTGTTCattaatggaaacataataaaattataattcctTTGACTAACTACATAAATTTGATTCTCAAGTCTATTTCCAGCTTGTCAACTCAAAACAGA--TCAGCTTTGAAAAGATGCAGAATGATGACTCCCAAGTGGATAAACACCAATAATTTAATGAGAGGAATTCacaagataacaggatata

a score=274538
s chr3           147158727 8442 + 160039680 [encoded data, 8994 characters]
s HiC_scaffold_1 133830704 8496 + 233722169 [encoded data, 8994 characters]

a score=183399
s chr3           147167247 9712 + 160039680 [encoded data, 10278 characters]
s HiC_scaffold_1 133839957 8653 + 233722169 [encoded data, 10278 characters]

a score=160400
s chr3           147177992 4484 + 160039680 [encoded data, 4739 characters]
s HiC_scaffold_1 133848942 4244 + 233722169 [encoded data, 4739 characters]

a score=29282
s chr3           147186192 662 + 160039680 AAAGAAAATTAACTTACTTTCCTCTCTTGTAAACTTCATAAGTGGAAAAGATGAAGGCAAAGTCCCTTGATTGGGAATTAAAAAAAATGGAAACAATTCAATTTTAGTTCTTTAGCACTTAAATAGCAGATGAATAATCCTTAAAAAGAGAATGTTGCCCAACTGATACATGAGCCATGATTTAAATCACTCTTTAAATGTAGTATTTGATTGCCACGCCCACTGAATGACAACTACA-------ATTAGCATCAATAGAAGGCACTTGAGCAGGTCTCCGTAC--GTGTGGTAATATACCCTAAAATTAAACTATTTTGGCCTTTCTGAAAGTCAAATCATTTT-GGTGAGTGCCTTCTGAAGTCCTATTGTTATTATGACTACTACTAATTTATACATATATAATGCATTCTGCTTTATTGTATTCTGAAAATTATATTTTAGAATTACTTTCCCCACCTGGAGAGAGCTGAGCAGAGAATTCGTAATACTCAGCAATGTCTCAGGCCTG---GTG-ACAAGCAGAAGTGCTGTA-ATATGCCACTTACCCTAGGGAGGTGGCACA-TTAAAAAAAAAGATTTCAACTTTGACAAGTGGGTCCAAGTATTGGGAGCGTCACAGAGTTGGGCATTTCTTCCTCCCCGTGTGACAATCCTCACAGCCTGATTGGGTAC
s HiC_scaffold_1 133856431 656 + 233722169 aaaaatcattattttgctttgttctcttgaAAATTTCAGAAGCACAGAAGACAAAGGTAAACCCCCTTGACTCAGACTTAGAAAATCTTGAAATGGCTTGATTTTAGCTATTTAGCATTTAAATGCAGGGTGAATAACTTATGGAAAGTGCATGTTGCCCAGCTAATGCATGGACAACTGTTTAAATCATTCTTTAAGTGAGGTATTTGATTACCACGCCCACTGAACAAGAGCTGCAGATGAGCATTATCATCAGTAGAAGCTGCACAAGCAGATCTCTACACTAAAGAGGTAATAAACCC-----TTAAACTATTTTGGCTTCtttgaaaatcaaattattttggGCAAATGCTTTCTGAAGCCTGATTATTATTATGACTACTActaatttatacatatataatgtattCTGCTTTATTGTAttctgaaaattatatttctgCATCATTTTACCCACCTGGAGAGAGCATAACTGCTATTCCATAGCACTCAGCAATGTCTCAGACCTATCCATGTACAGAAGGAAGAGTTGTAGATATGCTACACGCCCTCTGGAGgcaaaatgtttttttcaaaagaatttgaTTTT-ACAAGTAGCTCCAACTAT----------------TTGAGAACCACTTCTTCCCCACCTGCCATTTCTCCCAGCCTAATTGGGTGC

a score=18598
s chr3           147192256 665 + 160039680 TTTTTTTTTCTCATTTAGTTTTTATTCATAATCATAAATTTAACTCTGTAATCCCAGCCAGACTTGGAAGGGAACGAGGATACTAAGAAACCCAAATAACTTCAGTAAGAGCAGAGATGGCAGGGTATTAAGAGCAGATGGGGTGGAGGTGAGGAGCGTTCTCGCAAGCTACCAAAGGAATGGTCT-GCTGAGTAAGATGTCAAAAGAATTAGATATGT-----CCACAGTAGGAAATGGTGATCATCTTACTGGTCTTGCCATTCCTGGACTCCAAGCACTCCATGACTTCCACAATGTCTTTTTTTTTTTCTTTTTAACCTTCCCAGAGACCACATGCTTGCCACCAAGTCACTCACT---------GCAGATAAAAACTGGGAACCATCTGTGTTTGGTCCAACGTTTGCCATGGACAAGATGCCCCCAGCTGTACGCTTCAGAATGAATTCCTCATCCTCAAATTTCTCCCCTTAGATGGACCTGCCGCCAGTGCCATTGCAGCATGTGACATCACCACCCTGGTGTGTCACATCACCACCCTGACACATGAATCCTGGAATAATTCTGTGAAAGGGGAGACTCTTGTATCCAAATCCCTTTTCTCCTGTGCTCAGAGC-ATGAGCGTTGTCTGCTCTCTTCAGAACTTTGTCTGCAAACAGTTTGCAGGAAAGACA
s HiC_scaffold_1  72460680 615 + 233722169 ttttttttaattatttaggttTTATTCATAACCATAAGTTAAACTctgcaa----------------aaaggaa-------aatatggaacCCAGAACACTGCAGTTTCAGCAGAGATGATGAGGTGTTTTGAGCAGGTGGGTCGCAGG------GTGCCCTTCTGAGTGA---GAGAAATGGTTTTGGTGATCGTGATAT-AAAGGAGTCACATGTGTGTTGTTCACGATCGGCGATGTTGATCTTTCTCCTGGTCCTGCAGTTTCCTGACCCGAAGCGCTTCATAGCACCCTGGAGTTCATATCCTCTTTC------ACTTTCCTGAAGAACATGAGCTTGCTTTCCAACCTCTTGCTTTTGGTAATGCAGATGAAAAACTGAAACCCTTTATTTTTGGTTCAGTACTTGCCACATAGAAGATGCCAGGACCCGTGTGCTTCAGGATGAATTTCTCA---CTGAATTTCTCC---TATAGACACTTGCCACCAGTGGCACTGTGGCCTGTG---------------------ACGTCACCACCCTAAAGCATAAATCCCAGAATAATTCTGAGAGAGCAGGAACACTTATAACCTAatgttttctctccagtgttcacagcaaaaaatgttttctgttgtctttggAAGTTTGTCTGAAAATAGCTCAAATGAGATGCA

a score=3960
s chr3           147192529 214 + 160039680 ACTCCATGACTTCCACAATGTCTTTTTTTTTTTCTTTTTAACCTTCCCAGAGACCACATGCTTGCCACCAAG------TCACTCACTGCAGAT-----AAAAACTGGGAACCATCTGTGTTTGGTCCAACGTTTGCCATGGACAAGATGCCCCCAGCTGTACGCTTCAGAATGAATTCCTCATCCTCAAATTTCTCCCCTTAGATGGACCTGCCGCCAGTGCCAT
s HiC_scaffold_1 155171580 220 + 233722169 ATTCAATCTTTTTCATAGTATCTGTATTATTCTC-----AACAAAACTAAATACCACATGTTTAAGATCCAAATGTTCTGCCTCATTTTGTGTTATGAAAAAACTGAGAATTATTCATATCCCATCCTCAACTGGACATAGATAAGAAGCCAGGGTCAGTGTGCCTTACATTAAAGTTTTCATCTTGAAATTTATCTTCATAAATGGACTTTCCTCCTGTCCCAT

a score=122228
s chr3           147195524 5590 + 160039680 [encoded data, 6340 characters]
s HiC_scaffold_1 133873699 5717 + 233722169 [encoded data, 6340 characters]

a score=46523
s chr3           147203722 1442 + 160039680 ATATGGGTCACATGGAAGTCACTTTCCTCTATGATATTGGTAACTGTCCTTCATAAACCTTTACTACTTAAGAGTGACTTCCCAATGTTCATTTTCTTGGTCTTGTTAGATTTTCCTGTGGCTGTGACA--TGTTTACAATGTCTGCCTTTGTGAACTTTTGCTAACAGTAAATCAAACTTTAACTGAATGCTTCTCTTTCTAGCCATAATTTATCAGATGTGGGA-GGCATTTAATACTGCTATTTAATATGTGAGGCACTGATGTTTGCGTCTGCATTGCTAGAGAACTTGGCTTGTTCACCTTCATCCTGCAAAACATGGGAAGTAGAAATGGGGAGAGAGAAGCAGAAAAATTCCCCAGCTTCTCTGAGATCCTATAACTGTTGCATGCACATTTT----CAAGTATTTGTCTCAAATCTGTGAGACTAGAAGACACATATGTATACCCTTTAGCAAGTCTAGTGGTTCAATTCTTGATTGACACATCACGTGTCATA---------------TCAC-ATAGAACTGCACTTGGTAAGGCTTGTTGTAATCTCTTTGGAGTCAAGGAAACTT-GACTCTTTGGAGTCAAGTGTTGACTCCTGCAAATTTGATCAACAATGTCAAA--GCCAAAGTTTTCACTCAGAAA-ATCTGTCTAACTCACAAACCTACCTGTTCCCACCAGATATCCTGCCTGCTAGCCT---------------------TATCT-GCAAGCACATTAGCTTGGTTTTCACAAAGCATGCCCTATCATCTTCATTAAACT--ATATTTTGTAATTGCAGAATGCTACCAAAGTCTCCTTTCTGT---TTGAAGAATCCAT-TCCTAGTAGACATATCTGACAAGCAGGTGCTCACTGCCCTTTTAGTCCTCTCATTGGGAGTTGTGTAG--TGTAGACTTGTATAAAGTAAGGGTAACTTGGTATGGTGCTAGGTGAAGTGGAATTCTTCCAGCTCTGGCCCAAGCAGAAAGTCAATACATTAAAAGCCAGAATTCACCAAGGAGCAATGTGCTTAGAAATTCAATACTGTAATAAGTAACTCAGTACTCTGTCCATGAAAGATGCCTCATTGTCC-CCCCAAAATGTTAATGCACTGCCCCTGGGTGTCAGTCACTCCTGCCTCTTAAAGCACACACATGACAGAAATCAATAAAGGGAATTTTCTTTCTTCCTTGAAGTTTGCTCTGCAGTCTCTGAGATATTATCAAAGAAGAAATGCTTTGTGATTATTTAACTACATCGGATGCCTTTGTTGTGAAATTGAAATTAAATTGAGTACACTTAGACTGTGCA-TTTTGTATGAGGCTTGtaattatatatataattaaaaatt---------------aaatttaaatGGACAAG--TTTTCTTTATGGAGCCTACTTTCTCTCCTT-CCAAGTTCTTATTTTAGTCGGGTTTATGACCTCCATTAATGAGACTAGGCTTTCCACA------TTACTTCATAGCTCTGGGTAGATAGGTACca
s HiC_scaffold_1 133881792 1486 + 233722169 atatggttCATTTGGAAATTACCTTTCTGAGTGGTTTCAATAATtgtaattaaaaaacatttaatgcGTGAGCATGATTTCTCAAGGTTCACTTTCCTGATCTGGTCA-ATCTTCCTTTGAAAATAGCAGCTGTTTACAAGGTCTGTCTGTGTCAACTTTTGCTCAAAGTGAGCCATACCTTATCTGAAGACTGCTTTTACCACCTCTAATTTATTAGAGATGGGACTACACTTGAGATTTCTCTTTAACATCTTAGACCCTG--GTTTGCATCTGTAGTCCTAGAGAACTTGGCATGTTTACTATGATATTGCATGTGTTGGTGTGTGGAGAATCAAAGTAGGAGAAAGAAAACCTACTCAGACCTCTTAAAATTTCATGCCTGTTGAA----CATTTTAATCCATTTAATTTTCTCGTATTTGTATGGTTGGAGGGCACAGATGGGTAACTTTTAACAAAT--AGCATTACACTCCCACTCTGGCAGATATTTTCACATAGGCTAAGTTTTTCAATCACCGTGGAGCTATATTTGGTAACCATC----TACTCACTCTAGAATCAAGGAAACAGAGACTC--------AGAGTGTTAACCTGGGCAAGTTCAAGCAGCAATGAGGAACAGCTGGAATTTCAACCCAGAGACATCTGTCCTGCCTGTGAGGCTggctttcctcccctccccccctgcccccccccccgccccagatCACCTACTGACACATCTAGCAAGCAGATGAACTCAGTGTGTAGAAAATGTGCCCTACACTCACAATTAAGCATAAAATTTTGTAATGACTGCATGTTACTAtatacttgtttttttcttttgaaaaatccaCAGTCTAGTGGATATATCTGACAAGAAGATGCTTCCTACCTGGTTTGTCCTTTCACTGGAAGTATTATAGAATGTAGAACTGTATAAAACAGGAGTAACCTGGTATGGTGCTAGGTGAAGTGGAATTCTGTAAGCTCTGGCCCAAGCAGAAAGTCAATACATTAAAAGCCAGAAATCGCCAAGGAGTAGCTTGCTTGGAAATTCAATGCGGTAATAAGTAACTCAATACTCTGTCCATGAAAGATCCCTAATTGTCCACCAAAAAATGTTAATGTACTGCCCCTTGGTGTCAGTTAgccctacattttaaaatattcacataaaagaaatcaatgaaaggactttt-tttcttccttgaagcTAGCTACACAGTCTCAGTGATATTATT-AAGACAAAGCACTAGGGTATTATTTAGAAACACTAAACACTTTcattgtaaaattaaaattgaattttg-aaatttgaaatatgcATTTTTGTGTGA-------AATTATACATG-----AAAAATTACATTgcatatgaaaaaatttaaa---acaagtattttttcTATGCAAACCTTTATATCTGTTTGTCAAATTATCATATTAGTATGGATTATAAACACAGCCAAGGATATTCAAACttccatattgtttttatttcatagctTTGTATAAACACATACCA

a score=11485
s chr3           147206045 714 + 160039680 tTTTAAAATGACTGGTGATATCACCACTGCTTACTGAGTAGCTTGCTGTATT-----CTGGGCTCTTGTTA-ACTG----AGACAACCAAGAATAAGACACATAACTTCTGTGCTTTGGGTTATATGTTACTAGAAAACACATAAACATGGGCAGTC-ATTATGATACTGTGTGTTAAGTATTCGGATGCTTTTAAATGCTTATCACAGAGCCAAC--AATTGATCTGAGGCAGCAGTGAAAATGGATTACTTAGGAAACTAGTACAGTATAGTGACATTGAACATATGCAAGGTCAAGTTAGTCAGAG-GCTAGACTGGACCCAGAATAGAGGCTTGGG-GACAGGAGATGAGAG-----GAGACTTGCATATTTCAGACAAAGGA----------AGGTCTTCCAGAGGTTGGAGAAGACTAGAAGACAGAAAATC-------TCCAAGAGTA--TCAGAAGACAGCAGTGATGACAAT-----------GGGGCTCTTTCTAAAATAATCACTGAAGAAGCTAGA----AAAAATTAGAAAGGTAATTGCAAGCTGTGGTCA------TGTGCTTAGAACGGAGAATGCAAT--------ACAATCCCATTGATCTTTTGAAAAGGGGCATCTGGCTGTTTGGGTAGTAGATGGA-------------------GGGGGACCTTTGAAATAAACTAGATTTTCTGGACTGGCAGCTCCCATTGGAGATCCTGGTAACAGGGAACAGAAACAGAAATGTACATGCTTGGCAGGTAG-------------TTGATAGGACTCAGTGATGTCTT
s HiC_scaffold_1 133883284 775 + 233722169 TTTCATGAAGACTCTTAATAACACCACATGTTTGTGTGGGGTCTCCTACATGTAGTACTAGGCTTTGATTAGACTGTGGCAAAcaatgaagaataagaaaaattacTTCCTTACCTTGAACTATTTATTACCAGGAAGACCAGACACATGAACAATCCATTTTAATACTGTGTATTAAGTATTTTGACACTTTTAGATGCTTGGAACAGAACCATCTGACTTAGCCTAGGGCAGGAGTATAAAGTGAGTTCTCAGAAGGCTGCTAGAAAAAAGCAATA------------AAGGT-------GACAGAGAGTCAGCCTGGAGTTAGATGAGAGAGTGGGGTTACTGGCGGTGGGGAATTGTGAGTCACACATGCTCTAGAACAAGAATGCAGCATCTAGGAAACCTAGAGTCTATAGAAGGC------ACAGAATGTTTTACAAATTCAAGAATAATTAGGAAGGTGGGAGAGAGGACAAGTTAAAATATAAGGGCCCATTTCTAACACAGTCAGTGAAGAGCTAAGACTAGAGAAATCAGGAAGAGCCCTAAAACTCATGTTCAGATAACTGAACTGAGGGCACTGAAAGCAAGCAAGAGAAAAGGTCCCATTTGTGTTTTCAGATGGGCCACTTGGCTGCTGGGTTGGTGGATGGATGGTTCAGGTAGAACCAGCTGGGTAGCTTTGAAATAATC-------------CCAGTGGCCTTATTTGGACCTTGCAGTGTCATGAGA-ATGAGCAGAAATTGACATGCTTGATAGATGGTGGCTCGAAATGATTGACAAGACTTGGGGATTGCTT

a score=31917
s chr3           147211204 1436 + 160039680 CTGACTGAGATGCAAGCACTGCTTTCTGTAATCTTCAGTACATTTTAATGCC-ATATTCCCCTTCCATCACATCTGTTTTATACAGCCTAGTGTTACTGG----GTCTCT------TACTCTTGGGACATGGGATGAGTTTCACATGCGTTTGAACTTCTCAGGGCAGCTGAGAGGTCTGCCGACCATGAGAAATAGTTTTGTGATGTGTACGAACTAGACCTGGCT---CTTATACCTGATTTTGTTTCTGTTTTCAACATGCAGTTAAGCTGTAGACCCCACCCAGCGTGGGGGCCTCCAGTTACACTGG-CTGCTGAGAGTGTCTG------CTATGTATGCACATGGTTGAAAATTCCTTCTGAATAAAGTCATTGTTCCCTAGGCACAAAAGGAGAGTAACTAAAAACTCAGAGATCAGAGAATGTTCTGG---GTTACACAGAAAAGAGAGACTGAAAGAGCAATTGTTTGCTCTCTGCTTTTCCAGATAGTTCTTTTTATCTGCTTCTTGGCTTTCCCTTAGAATTCATTAACTTCATTTCTG---CCTATCTTCATGGTGCTGCTGTAGTAGGTTTGATATATTTTTGCAGACCAGATGAACATACACAGAAGTGTAGAAGATCCACTGTTACAGTA----TCTGACAGAATTTTCTTGTTTCTTTCAATTGAAGGCTTCTGCCAAATTCTTGTCCATTCATTAAAATAGCAGTAATGACAGAGCTTTTTGCCGGT--CTCCTCCTCTCTGCTTTTG-------------------TCTCTAGCATTCCTTAAAGGATGCTTTCTAC----TGTAGTGCAGCCTCAAACAATTTGCCCTGCTGCTTCTTTTCTGGCTGCAGtggggctttgacaatgtttacctaaag-atggtgctttgacatgcttactatcagct---ggagcctggagggtttttggagggtgatctctctggcctgctgctgccctcccatcctctacctccctttctcaccccaaAATG-GTCATAGGAGCCAGAATTATTCTTCTCCAAGCCAAGTCATGGACACTAGAATCCCACTTTCCCAAAGTATGTGATAAAACCCAGGGAGGCTACTATTTCTGCTCTTTCTC--GAGACTCCTCCTGCTAGAGTGGTTTAGCCCATATCCATGAGGGAGGTAAACTACATAGAGAGGCCAAGAACAACTGGAACAGACTGGCCTTACTGATTGTGCCCTCTGAAGTCTATTATTATTAAATAGTAACTCTATACCTCTTGTATAACTGCATTTCTAGA-CAGTGTCTGTTCATCAAAGGGCCTGCAGAGACA--------------CCTGGGTC-TAAATTCTCCAATCTGAAGTGTCCTCCTTCATATAAAATGAAGGTCATTTTGATCAAACTAATTTACTACATTTTTTCTTTTGCTAATTTGTCTTTTGTTATAAGAATGTAAGCTATAACCATTATGACAAGTGAAGAAAGACATCACATTCTTCTAACTCAGTAGCt
s HiC_scaffold_1 133891201 1424 + 233722169 CTAACCACCACACAGTCACAGCCCTCTG---------GTGAATTTTAATgcctattttttcctttcaccAGGTCCATGTTAGGCTGCCAAGTGTTACTGGACTAGACTTTGTAAACTTCACCCAGGATATGTGATCATTTTCACAAGCTGCTTCCTTTCTTAGGGAAGCTAGCAGTTATGTAGACTTTGTGGAGTAGCTTTGCGAAGTATGTGAATCAGCTCAGGCTGCCTCTGTAccttattttatttctgcttgtAGCCTCCAGCAAAGTTA-AGTACCCACCCAGCATGGAG-CCTCAAGTTGGTCTGGGTTGCTGAGAGTTTCTGATACATCTATGTGTGCACATAACTGAAAATTCCTTCAGACTAAAGTTCTTTTTCCTTACGTGCTGAAGGAGAG--------AACTGAGAG----GGGAAGATTCGGGTATGTTCTACTGACAAGAGGAATGGAAACA-----TGT----------CCTTTTCTGCGGATTTCACTTATCCACCTTCCTGTTCTCCTTCAGAGCTCACTAACTGCAAGGCTGCATCCCATCCCCACGGAGCCGAT---GTATACCTGATGTACTTTTAGAAAGTGGTTGAA---AC-----------GAAGACCCACAGCT-CATTGGTGCTCCCATGACAGCCCCTTGTCCTTTCACTTTGGAGGTTCCTGCCAAATTCCTTTCCATTCATTATgggaacaataataaaaaaattttctgggagttgtttttctcatctgcctttataattcagtttttttctgttctatagTCTCCTT---AGGATATTATCTACCTAATGATATGCAGTGATACATGTTCTTCCTTGGTGTTTCTCTTTTGACTGTGTTGGGATTCTGAAAATCATACCCTAGAGTATGATGCTCTGGCATGTTTACTTTGAACTCAAGGAGATTGGAAAGGCCTCTGAAGAAGATCGCTCTGACCTTGTCTTGCCCTCCTATTTCCCACTTCTCTTTCTCACACTGAAATGAATCATAGAAAGCAAAATTA---TTCCCCAGGCCAAGTCA--GAAACTAGAAACTGTCTCCCCCAAAGTAAGCCATAAAACCTAGAAAGGtcactctctcc-ctcttcctttgaAGACTCTCATTTTGAAAGTGTCCTGTCGCATACCTGAGAAGAAGAAAAGCCACACAGTGAGGTCAAGAAGAGTCTGAACAGATGTACCTCACTGGGTTTGGTGTTTTCCAtctatcatta---------atttctgtttct-ttgtccaATCATGTTACTACACCATTGCTCATTCATCATCAAACCTAAACATACAATTAAATTATAAGCCATGGGCCTTTGAGTCTTCATTCTCAACACTCCTGTGTTACATAAA---------ACTTTGACTAAATAAATTTGTTGTGTATTACTCTT------TTTACCTTTTATTATAGAGGTGTTCCCTGTGATC-TTATGATTGTTAAGGGAAAGTGTCATGCCTTCCCACCTCTACAGTT

a score=5170
s chr3           147212343 290 + 160039680 GAACAGACTGGCCTTACTGATTGTGCCCTCTGAAGTCTATTATTATTAAATAGTAACTCTATACCTCTTGTATAACTGCATTTCTAGACAGTGTCTGTTCATCAAAGGGCCTGCAGAGACACCTGGGTCTAAATTCTCCAATCTGAAGTGTCCTCCTTCATATAAAATGAAGGTCATTTTGATCAAACTAATTTACTACATTTTTTCTTTTGCTAATTTGTCTTTTGTTATAAGAATGTAAGCTATAACCATTATGACAAGTGAAGAAAGACATCACATTCTTCTAACTC
s HiC_scaffold_1  85699823 240 + 233722169 GAACCAACAGACCTTACCGGG-GTATCTTTTGCAATGTTACATGA------AGTAAC---ATAATGCTTGTCCAATCACATTTCTACATTG---CTGTCCCT--------------GGATATTTTGGTC-AGTTTCTAAAAGCTGTTGTGT-----------------GAA----ACTTTCATTAAATAAATCTCTTATGCTTTTCCCTTC-CTAACTTGTCTTTTGTTATGGAAATGTGAGCTATGACCTTTAGGACAGGTAGGGAAAAATATCATACCTTTTTGCTTC

a score=29420
s chr3           147213437 1363 + 160039680 gagagagggagaatgagagagagagagagagag-----agagacagagagacagagagacaga--gagacacagagagagagagacagagagagaacagagggagagagagaagacacaaagCAAATTTAGATTGA-AGAGGCTTTCATATA----GAAATGA---TCAGACACTTCATGGCATGTGAAAGTGTGCATAAT----CTGGA----GAGAAAATACTTTTAGCTGTGCCATTGAAGTCTC-CTAAATACCCT--CATGTAACATCACCTAACAGATACTGAC-------ATGGATGGGATATTGCTGTATATAGGTAAGACTTTAGGCTGAAGATGGAGAGTCATTTTTTTAAAGCCTTGTGGCCACCTGTCAAGTGAATGAGTTGGGATTTTTCAGTCTATTCTCCAGACTTAGGTTAGATTCTTTGCAGCTGCCTCACCTAGATTTGAAGAAATCCTTGAGGAA---ATTTTGAAATGAAGGCCTTGAAGTACCACAGGATTGAACA---------CTCTAGGA-TTTGAGGAGACTCCTGTCATTTGTATGGCTATGAGTGTGAAGCT-----GGGACTATAAGTCATGACTATGTAAGGAGGGTACAGGATGAGTTACAAAGAACAACTAAGGATGAAAGTTAAGTGCCAAGGGAG-AAAGAAGGAAAGTAATTACAGTCCAGTGAGGTAAGCATAAACATATTTT------TGGAGGAAGGAGCCAAAGTGGGAATGGAAGATACTAGGCTGCAAGGTTTCCAAGGGCTAGCTAGCGCAAGCTTTTGGGTAAATCAAAGT-TTGCTACAAATTTGATCGGATCTTATATTATTTTAGGAAATGTGAAAACATCCTGTTAGACATAAAACTAAGAATGAAGTATAAAGCTAAAGTGTAACACAGGTCCTTGGAGCATTGTGTATCTATGGGTTTGAGTCTAGGAAC-TGTG-GACACTAGAGTTTCAGCACTGGACCTTATAACTTTACTTATTACCTAAGA--AAATGGAGGCCAGGAAACCTGAATCACATCAACATGTGACCGAGCTTGTTGCAAAGTAGGGGACAGAGTATGGGATTCTACCACTCTAGTTAAC--TCTTCATGTAGAGTATGACA-TTAGTGCAGGT-GTCCAGTACCCAAATCAGAGAGGAGCTCCATCTAAGTCTACCCACGGGACAATCACGGGACATGTGGGAAGAAACTGGA---CTAGATTTCAAAGCATGATGGGAGGCAAGACAAGGAGAAGTATGGCCTGGCAAGCTAAATGCTAGGAGGAAATAAAACTAC--TAGAGATGGAGGTTGAAATAATTT-GGTGGTAGTAAGGAAGAGGCAGAGGAGAAGCACGGGGGCAAGAAGAGGAAGGCCAGAGTACTGTTAGCAT-TCTTCCAGGACAGTGTTTGAATTTCATGAGA
s HiC_scaffold_1 133892943 1392 + 233722169 GAGGGCGGtagaacaaaagaaagacaaagatagTCTTAAAATGTAGAATGGAATAAATACTGCCTGGAAAACtgcaagaaggaaa-agagagggaaTGGAGG-----AGAGAAGACATAAACCAAAGGTGGAATAAGAGATATCATCATGTACAAAGAAATGAGTGTCCCAGACTGCATGAGACACAAGAGTATATGTAATGTTGCTGGGTAAGGAAAGAAGATTTTAAGTAATATTACTGAGGGCCAATTGAATGCCCTTTCATAAAATACCACTCCCCAAGTGTTGATTGAGTAAATGATTGTAATTTTATTGTATCTAGGCAGAACTTTAGACCAAGGATAGTAGGTCACTTTTT-AAGGCCTTGTAGCTACCTAATGTGTGGCAGATTTGGAGTTT--CATTCCATTCCTCCAGCTTGGAATGGCTCCTTTGCACCTGCCTCACATGCGTTCACAGGTCTTCCTAGGCATCCTGTTTGGAAAGGAAGGCCCGGTAGCACTGCATGAATTAGCaaccacttttttttaaaactttgaagagATTTTTGTAATGTATGTGGGTGTAAG-ATGAAATTAAGGAGGAAGAAAAGTTCATCTTTA---GAGGAGAGCCCTGGGTGagttaaaaagagaaatcaaggatgAAGTTTAAAGAACgatgaaggaaaggagggaagtaATTAGAGTTTAGTGAGCTAA----AGACACAATTTAAAGACTGCAGAAAGGAGCCAAGGTGGGAATGGAAGGGATTAGATTCCAAGGTGTCCAAGGGCTGCCAA----AATCTTTAAGGTAAATCAAAGGACTATTACCAACTCAatagaattttatattattttaggaAACCGAGTACCAGTCCACTAGCTGCCAAGCACAGGATCAGGAGTAAAACTAAAATACAGAGCAGATTCTGGGAGCTTCACATAGCTAAAGGTTTTGGCTCAGAAACATATGAGGTATAGGAGCCTAAGGGTCAGCTCCTGCGACCTCTCCCTTTGCCACAGATGAAACTGGAGCCAGAGAGGTGGTGTTAAATCTCTGTGTACCTGGGATTACTGCAAAGCAGGGATTCAGTTGTAAACTTCCAACACCCAGTTCAGTGATCTTCACCAAGAATGTGAAGTTTAGATCAGGTCATGGATTTCCCAAACTGGTCAGAA--------------TATCCACAGGCCAATCATGGAACATGAGACTTAGAACTAGGAGCCCAATCTACAAATGACTATGGAAGG-----GAAAGAGGATCGTGAcctggaaaaataaatggtagGAGGAAATTAAAGGACAGTAGACTGGAAGATTAAAAAGGTTCAAATGATGGTAAGGAGAAGGT---GGAGGAccacagagacaagaaaa--aagaccAGGATATTATCAGTAGATCTACAAGGAAGACTTGTTAATTTTATGGAA

a score=12081
s chr3           147215115 994 + 160039680 gtTTTCTTGGTTCTATTTACTCAAGGCTGATGTTTTACTTGATATCCAGTGTCATT-----------------TTCCATCTTGAATCTAAGCCTCTCAGGATGACAAGAGTGTCATTTAGAAAGTTA---TCTCTGCCTCCGTAGTCATGTTAACGCCTATGGGGTGAGTTTAGAAAGACATTTTTCTAACCCTTTTTTTGTTTGTTTGCTTATGTTGTTTTTTACATA---TATGTGAAAGACTGGAAACATACACTACCTAGAAGAACTCATTAAGAAAAACAAAACAACAAAACCCAGAAAGATAAGCCATCTTCCTTTTTATTTCAAGTCAA------AGTTTAATAAATTTAAAT-TTTCCTGCCCATAGGAAATTATATGTGTTATTTAGAATGTTTTCATGAGGA-GATGGTTAGATGTGGGTATAGTATTTGACTAGTTCATTTTAGGCCTGATGTGGGGCTAAGCGAAG-----------------TGAAGAAAAATTGAGCTATGGTCATCTGTGCTTTATTCTTCTAACTTCCTTTGAAAATACACATCTTCCATTTCTTCTACTGTTCCAGACACCAATAAATGTAtctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtatgtgtgtgtgtgtgAGAGAGTATGTGTCTGCAATCTGCATAGTATTTATATATCAAAA-TAATCACCACTAAGT-TAAGTCTTGAAGGTTTGATTTGTAACTTTTAAATTCCCACCCTAGTT---AAGTCTTGGATTTATTTTTAATCTATAAGTTACATTAGCCTGAGCCCCATGTCCTTGTGCAGAGCACAG--TAACTCTAGAACTAGAGGAacatacacacacacacacacacacacacacacacacacacacacacacacacacaTATTAGCTTGAATGTGAGCTTTGAGGAGTTGGAGACTATTTCCCCTAGAAGAAAACATCCAAGGATCTTCC-----TGGAGCAGTCAGTCACCAGCCATCTGCATACTGTAG
s HiC_scaffold_1 133897516 855 + 233722169 GTTGTCTTGATTCTATTTATCCAAAGTTGATCTCTTGCCAGACA-CTGGGGCCATTAAAAAGAAGATGCAATGTGTTATGCTGAATCCAAGCCATTCAGGGTTACCTGCTTTCCATTCCAAAAAGCAATTTTTCTGATTGTGACTTTAAGTTT-TACCCTTGGGAGGATTTTAGGAAGGCATTCTTCTAA------------------GAACTTGTTGCTTTCTGAAGAAGATCTGCGAAGGTC-AGAAATATG----ACCTTGAggga------aagaaaa---------------ccagaaagataAAGCTTTCTACTTCTTACTTCAAACCAGCTCTTTAGATTGGTAAAAGTACATATGTTGGGTCCATAGAAAATTTCA-GAGCTATTCAGAATGTTATTGTAAGGAAGAATATTAGCTCCAGCTGTGGCTTTTCAATGGCTCATTTT-----------GGGGCTGAGCAAAAAGCTGACCTGTTGTTTTTGAGGAAGAGTATTGACAATGACATCTGTACTTTTATCTCCTTACTTCCCTTGATAATAACCACCATC---TCTTTCTAGCCTCCCAGGCT---ATTGATGCA-----------------------------------------------------------------------------ATATGGGCTGGAGaaa------------aatcc-------attttgatttcacaACTAATTATTGCTAAGGGTAAATCCTTAAGTCTGAATCTCTAGTCCAGAAAACTCCACTCAGTTTTGGcagatttgaaattatttttaacctACAACTTACACTGAGTCTAGCTTTATATCCTTGGGCAGAACACACACTTACTCTGGAActatacttatttatattttcattgaaacATA-----------------------------------TAGTTTGAATATGATCTTTGAAAGGTTGAAGACTATTTCTGTTGAAAGAAAACTTACAAACATCATGCCTATTTGGAA----TAATCCTCACCCATCTACATACTGTAG

a score=12669
s chr3           147218509 445 + 160039680 CTAATCTATCTACATCTGGTGATAAAAATCTCTCTCCACATCC------------------------------------------------AGTATAACTTTGATAGGCT-CTTCCTGG--------CAGTGCTTCATATGTTGTT------CCTCTTGCATAAACTCCCTGAAAGAGTTTTCCCCATCATTTTCCCCACCCCCTGTCCTAGAGGTGAGCACAATGGTTCTTTT---GACAGCTCATATATAGTTTAATATCGTTTGA----ACAGCCATGAAAAGGCGGAGCTTAAAGTTGCTTCAGCTTCTACACAGCTTACTGCTTTGAAAACAAACTCAATTCTCTTTCCACTGATGCAGTGACTGGTTCAAAGCTTCCCACACCAG-CCAGGCATATTCTGTATTAATTCTCCATACTTTTGGAGGTGCAGAGTGACTGAGAGGCATAGCGCAATTTAAATGGTACTTGCCATCGTCGAGGTACTGAGTTTGGAGACAGCtttcttttttt
s HiC_scaffold_1 133899611 502 + 233722169 CTAACCTATCTTTATCTGGTGTCAAAAATCTCTCTCCACATCCCCATCAGCTTCTATTGCATACATTCTATAAATGAATCCAAGTCAAACTAACAGGACTCTGGTGTTCCGCTTCCTGAGAACATCAcggctctttcttttttgtttttggtcctgTAGCATGAACCCCTTGATAGAGTTTTCTA-ACCATATCCCCCACCTCCTATTGTGATGTTAAACACAGTGTTTCTTTACCAGACAG--------TAGTTCGATATCTATTGACAGAACAAGTAAAAATGGGTGGGGGT--AGATTGCTTCATCTTGTCCACATTTTATTGCTTTTAGGGCAAATAGAACTCTCTTTCTGTTGATTTAGTGCCTG-TTCAAAGCTGCCCACACTAGGCCAG--ATATTCTATATCAATTCTTCTTGTCTTTAGAGCTGGGACATGATTGAGAGGTTCATTGCAAGGAAATTGTTACTTATAATAGTGTCAGCACTGAGTTTGGAAATGATTTACATTGTTT

a score=104533
s chr3           147226289 9365 + 160039680 [encoded data, 10860 characters]
s HiC_scaffold_1 133902347 9598 + 233722169 [encoded data, 10860 characters]

a score=17374
s chr3           147237235 494 + 160039680 AAGTGTCATAAAACCAAGCGTCATTGTTATCTTTGCAGCTTCAAAGAC-TGTCCACCCATGAAAGGATTTTCTCTGAAAGCAATCAAGCCAGATACAGATTTTCCTGTCA-TGAATCTTT-AAGGCTGAGTGTCAAGCAG-CAAATTAGAGGACAGTTTCTTAATCAGTGGCATTGATTTTCACTTTCTTTCTGTATCATTGCTCATTTGTATTAAGGCTCAACAGAGAATGTTTTTTTTTAAAAAAAAAATGT---CTGCCAGCCTTGGTTAGAGAAGCACTCACAGAGA----------AATGGAAGAGGCGCTGAGCTCCTCTGGGTATTAAACTGGCCTGGGAAGCTAGCATTTGCTGTAGTGTATACTGGGCTGAGACAACAGCATCCTCACAGTTAGGCAAgcactgcaactttcaagccatgtgtcctctagaaagtcatttagcatcaagaagcttcagtttcccgtctttaaatgagaaGGAGAAGGAGgagaaagagaaga
s HiC_scaffold_1 133913791 497 + 233722169 AAGTGTAGTAAACTCTAAAATTATTGTCATCTTGGCAGTTTCAAAGAAATGTCCACAC-TTAAAGGATTTTCTTCATAAGCAATCAAGTCAGATACAGATTTTCCCCTTAATGTATCTTTTAAAGCAGAATGTCAAGCAGGCAAATTAGAGGACACTTTCTTAATCAGGGGCATTGATTTTCACTTTCTCAACATATCATTGCTCATTTGTATTGAGGCTTAACAGCAAATGCT-----------AAAAAATGTCAACCACCAGCCTTGGTTAGAGAAAGACTGGTGGAGAAAGTGTCAGTAATGAAAAGTGCCCTGAGTTTGTA-GGGTGGTGGAGTGCGCCATGAAAATAGCAATCTCCATGGCCCACACAGCACTGGGCAAGTCAGGACTGAAGAGCTAAGACCACTTTGCTGCTTCCCGCCTGTGTGTTC-ATGGCAAGTCATTTAGCtgctccaagcctcagtttccggTCTCTCAGTgggaaaaaacaattaaaaatgaagaaaa

a score=80295
s chr3           147240008 3184 + 160039680 ACAATCGGCTACTGTGAACTTCTGTCCTTCAAGAGGGCCACAGACTGAATCACAGTGACTACTGTATGGCCCAGGAAAGACCTGAAAAAGTACTCTCAACCGCCAGTCAGCACTGA---------AGT-AGAGAGCTGGGTACTACATCACCATTCATCCACATCCCCGTGTCACCAAGAACTAGTGTGACACAACAAGACAATGGGAG-AAATCCTCTCCTTATGGAATTGAGCAAAGACAGC-------------CTCTGTCACTCCTGGACTCTGT-----GGATGATAACACCCAGGCCAAGA-----TTTCCTACTTTACCAAAGTTATACATGGCTTGCTATTGTCATGGCTGGTGTTGCATTTTTAC-CTACCTGGA-------------------------------GATAATTTATGTTACAAAGCtcattcattcattcattcattcatc--------------catccatGTAGTGCG---CGGGCTAGTAAAGTACCTG--------GCTTTGTAG---AAAAAGTTGTTTCCTGCAAAGCCCACCATCCAGTTGGGGG------TTACAGGTAAGAAGAGAGGAGGCTGGAAAG-----GATCAGAAAGAAAAGTAGAGAAAAGGTGATTGACAGTGCTCAATTACAGAAGGCAG--ATGGAAAGGTCTCTCCACAGTGAAGCaagaattggggaaataagccagacttgggaattctagaagca---aagcattccagaccaatggaatgaccagtgcaaaggcc--tggaCTCCTGCAGTGTATGGCTTTCAAGTGTGCATTCTTGATAATTCAAAGAGAGCAGGAGGGTCAGCGAGGGCACCATGCAAATGAGTGGATGGCTTGGCTCTCACACAGAG-CGTGGCCACTTCT--TATTCTTGAGGCTAATCTTGCTGGCAGTTATCAGTGATTACAATCCTGGGCCAAGCGTCCCTAGAAGACCTTGCCAGCTCTCTGTTTCATTTCTCAGCTGAGCAGTGTTATTCTAGGTTACTCATCTGGAAGAATGCCTTGGAATTATCCTTATTGTCCTTTGATTTTCCTCTGCTGATAAAACTGCACCATCTCCAAGGAGGGAAGGCCACACGCATTGGGGG-GACAGTGTCTGCAGATCCTAAAGCCTGTTTTACTCCTTGTTCTTTGTCATCCGTTATTAGTGAAGGTGTCACAGGCCCGACATCCCCTGTTGGGCCTTTGGCATGTTTCTGGTGAACGCTTGTATTACATTGATTTTGAATCACCAATGGTATTAAGTGGGTAAACAGCATAGCTTTAGAAGAAATCCTCTGAGCTTTTGGATATTAAGATATTCTCAACTTCTACTCTATTATTGTTACAGCTTAGTCTTGGCTAAATTCCGAAGGATCAGATAGCCTTGTTCATCATTAGACTCTGGATTTTTAAAACTTAGGTTTTAAGCTAGTTACTACCTTCACTCCAGTGTGACAAGATAAAGACTCATTTGTATGCGTAATTTTGGAGAAACT--GCATCAAGAGCCAGTGTGCTCCATTCATGTGCAGGAAAAATCATTGGGTAAGGAGTTGGAGGGAGGGAAGTATTGCCTGTGAACACTGATTCATTCAGTATTGTAC--TGCGGAtgtgtgactatgtctctgtgtgagtgtgtgtgtgtgtgtTTAGAACTTTCCTGACTATGAGAGGAGAG-------ATAGGGTGTGAAAGAATGCTGT-----AAGGCC------------------TACGTATATTTGTGCATTAGTGCCTTTAAAAAGCATGTGGAAGGGAAAGGAATCCAAGAAACAAAGAA----AATTGAGATGTCTGATCAAATCTCTCTCTCTGTTCCATCGTTCTGGGCCAAGCTG---------------------------AGGACAGGGAA--------GGTGCGGATCACTGCGATGTGTCGCCCATGGCTGCATCCTTTCCTCTCCACTACATTGGCTTCTAAAGGCAACAGAGGTGC-CATCTCATTTGTTGAAAGACTTGGTGAATGACTAGAAAGATGAGGTTAAAGTCCAGTGTCT----TCCCACGCCAGCCC-------------------ACGAAGCAGCC--AATGTTTAAACAT--------GAACTGC--ACAGGAGGTCTGACTAGACCCCGT-GAGCCACACGGAGTTTGACTA-------------------------------CATGACCCCGAATGTTCTCACCTTCCATTTTTAGAATCTTTAGGGAGGACTGTGGTGGAAAGACAGAAGACTAAATATGAACTTCTCCCTAAACATAATGTTGATGGAGATGTCCGCATGACTAATATAAGGT-GGTCATATTAGTCAATTCCTTGGACACAAGTTTGCTA------CTTCACTCATGCACATTGGCTGGAGCAGTAACAGAGGC-------AGTTGTTATGTGGGTGACACATGATTCTTGAGACAGTGAAAGTCTTACATCCTCCTTT--GCCAGTATAGTGTTTAAATGTACCCAATCACCTAGATGCTG--------TCATTTCAATCCATTTGCCTTTCAAGT-------CACATCCATTGATCCCTCAGCCATCTCTCAGT-----------GTTTTTGTATACATGCATTTATCTGTCTAGCTTCACATCTACCTATGTGGGCATCCATTCAATTCATATCTATTAGTTTGTGTCCTGTGTTAGATTTTATGTATTGGGCTGAGACATAAAGAAAACATG---CATTGTCTCA-CATCTGAGAGCTAATCTCATTATGATGTCATTTTGTG-TTGATGCACCCTTCTGTTCAAACCCCTGTTATA-TAGAATATTAGTATAGTT-------------ACTATACAATGAGATCGTTGCAGTTATGGTATGCGACAATGTCTCACAATAAGCATGAGAAACTGATACTTTGTGGAA-GTATAGGGTTTGCTCAAGTCCCTTGAAC--TTGGTAGAAGGGCTAAAACAAGGTTTTATATGTTCTGTCTCACA--------TTCTTTCTACTACATTACATAGAGTTTTGCTTTACACATGTTTTGAGGTGGTGTATATC-AAAATTGACACTGAACCATGATATAGACTGTATGGGTAGTCTAAAGTAAGGGCTTTAGTTTTTACCCAGAAGGATCTTCTAAA-TTTGGAAACTTAGAAACT----AGTCTCCACGAATCCAAATGGAACTT-CTGCTGTTTTAACTTTTAATTGCTAAAAGCATATTTATGAAGTGTCATTAGAAGCCTTCAAGACTCTGCAAAATATTGCATTTACAATGGAAAGTTTCTTCC-TAAGAGCCTAAGGGGGCCTCATTAGTGGACAATCAGTCATTCCCCTTGTTCAGCATGAACTC-ATCTCTGCCT-TTTTCTGTCTTGCATAAAGCAAA--GCAGAAGCAG-GGGTAAGACTTCGGAGAAGGCCACCCGTCTTGGCTAGAACCCCTACCCTT--TTCATAGTCTTACAT
s HiC_scaffold_1 133915544 3434 + 233722169 ACTACAGGCCACTG-GCACCCTTTCCCTCCAAAAGGGGCACAAA------------GTTTACCATATGGCCCAGTGCAGGCTGAAACTCATGCATTCACAGGGCTTCCAGCACTGACACGAAATGAGTGAGTGAGCCTGCTG--GCCTCAGTGGTCA-CCACATTGTTCTGCTGT-GAGAGATACTGCAGAGCACCAGTAGCATTGGAGCAAAATCCCTGCTTATGGAaaccag--aagacagcaaaagatgGATTTCTCTCTCaacactgtgttttattttacagaggagaaaactgaagcCAAGAAAATTTCACCCACTTTGCCAGAGTCACACA--GCTGGTACATGGTGAAGCTGGTATtgtatttctcttcttcctgggtGTTCTTTTCCAAAGGAAAGTGAACCAGTGGGATAATATGTGTTAAAGAgcctattcatttattcattcattcaacaaatatttattgaacacccaCTAAATGCCAACCCGGTCTCTCTGGTTTCTGACAATTGTGCTGAGCAGGACAAGAAACTGTCTTCT-TGACATTTGCTGTCCAATTGGAGAGATAGATAATAAACAAGAGCAGAAGAGGCCAATAAGTACACAATGACACAGAAaac---agcaacagtgacaga-ggccATTAGTTGTACAAGGGAGCCATGGAAGG---TCTTGGGGAAGAAGCAA-AATTGAAGAGA--AGTCAGGTGTGAAAATACAGGAGGAACAAAAGCAGGCTGGGTTGAAGGAACTGACAAAGAGAAGACCATTGGAGTTCCAAAGTGTTTGGTTTCCAA-TGTGTGTCCTTGCTCATGCAAAGA---TAGGAAGGTCAGAAACAGGA----GCAAATGAG---ATAGCTTGAATCTCATGCAAAGGAATGCCTGCCTCCCCTATTCCTGAGGCTAAACTTGCTGGCTGTTACCAGTGATTAAAATCCTGGGCGATACATTCCTGGAAGACCTTGCCAACTCCCTGTACTAACTCTCAGCTGAGCAGTGTTATTCTAGGCTACTCATCTGGAAGAGCGCCTTGGAATGATCTTTACTGTCCTTTGATTCCCCTGTGCTAACAATGCTCCACTGTCTCTAAGGAGGGAAGGCCACACACATTAGGGGCAAGAGCCTCTGAAAGTCCTGAAGCCTGCATTATTGCTTATTCATTGTCATCCCTTATTAGTGAAGGTGTCACAGACCTGACATATCCTGTTGGCCCTTTGGTATGTGTCTG-CGAATGCTTGTATTACATTGATTTTGAATCAGCAACAGTATTAAGTGGGTAAACAGCACAGCTTTAGAAGAAATCCTCTGAGCTTTGGGATATTAAGATATTCTTAACTGCTGCTCTATTTTTGTTACAGCTTAGTCTCTGCTAAATTCCAAAGGATTGTATAGCCTGGTTCATTATTAGACTCACGATCCATAAAACTCATGTTTCGAGCTAGTTACTGCCACCACTACAGTGTAGCACGATAAAGACCCACGTTGGTGTGCGATTTCTGGGGAACTTCACAGTAGGAGCCAATCTGTTGTGTTCACCTGTAAGAAAAGTCACTGGGCTGGGAGT----GGGAGGGAAGCAGTGCCCA-GAACATTAGCTCACTCAGCATGGTGCAGAGCTAGTGTCTGCCAGGGGTGCTGCATAATTAAG-GTACAT-------GGACTTTCCTGCctatggggagggagggagataaTGAGGCCTGGAACAGATCTGGGGGAAAAAGCctggttctgtgtgtgtgtgtgcgtgcgcatgTGCATTAGCATCTTTAAAAAGCACAGGTAAGGGAAATGCATCTGAGAGGTAAGGAAAGGGAGCTGAGGTGGGTAATTTCATTCTTCTcgactttctgtctctctgagaaAAGCAGTGGGAAGATAAAAGTGCATTTGACCCAAGGACAGAGGAAGGACCCGAGTGCGTGATCCTACGG-GTCTTGCCT---GCTACAGTGCTCTCCTTCCCCAATATT---TTCGGCACACCACAAGGGCTCATTTCTTATTTGTTGAAATAATTAATAAATGAGAGACCTGATGAGTT--AAGTTGTGTACCTTGACTCCCAATGCAGTCCTCTTCTCATGGTCTATGTGATGAATTGGCCTTAAT-TTTAAACATTGCAGTTAAAACAGTCAACATGTATTTTGACTGCCCTTTGTAGAGAGAGAGACCATTTAACTAAGTCCATTCAAACTGGTACTGTTTTCAAAAGCATGACACTGAGTGTGCTTATCTCTTGGTTTCAAAAAGTTTAGAGTTGACTGTGACCAtgaggcaaaaaaataaatatgagcccatacctaaa-ataa-----atataagtctCTCC-------CTACAAGGTCTGTTACATGTGTTAACTTAGCAGGGAAACTTTAGCTATGTATGCCTGATTCA---AAACTCACTGCAGGAAATTCAGAAACATCTCGGAGTCTTTACCTGTGGCACTCGTGATG-TTGAGATCATGTAAGTCTTATAATTTCTGTTCGGCCAGCACGTTTTTTAATTATGCTCAATTATCTAGATATTATTCATTACTTATTCACCTCTACTTACCCATTATGTACTCATATATATTCCATaatctcccttccctctctcagTTTTCCTGTTCAGTTTTCCTGTTCATCCATCCACGTATCCACCTATACATCCATTTACATATGCATTCATCCAGTTCCTGTTCATAAGCATGTACCGTGTGCCAAGTTGTGTGTGTTCGGAACAGGTACAAAGAAGATATGATTCTCTGTCTCAGCAACTTGTAGTCATTCTAGTTAATA-GCCACATTGTGCTTGACACAGTACCCCGTGTAATCCTTGATTACATTCGAGTCTTGGCATATTTATCCACTTCCACAACTATAAAATTAGATCAATGAGCCCATA---------AAGTCCTAATGATCTATATGTGAAATTTGTGCTTTTTGGAAGGTCTGTGATTTGCTTAAATTCCCTCAACTTTTGGCAGCAGAACAGAGTCTAGGATTTACATGTTCCCTTTCACAGCCCTGGGTTCTTTCTGTTACATCATGTGAGGTCTCTCTTTACTTGTGGTCTCAGGTGGTGTGTATCTGGGACTCCAGCTGAAGCACAGTGTAGACTCTGTGGGTAGTCTAAAGTCCTGGCTCCAGCTGTTATTTAGGAAGATGTCGTAAGCCTCAGGAACTTAGAGACCGGAGAGCCCTCAAGAAGCCAAAAAGAGATCAATAttactttatcttttaatttttcaaagaatatttatgATGTGCCATTAGAGGTCTTCAGGCCCCCATAAAACACTGCATTTACAGATGACACCCACTTCAGTGTGCGCCTAAGGGGTGCTCATTAGCAGACAATTAGTTATTCAACTTGttaagcattaattctttctatGCCTCTTTTCTGCCTGGTGTAAGAATAATGGAAAAAATAGCAAATTAGAGTTTGAGGAAGTTACTCAGTCCTTTCCAGCAGCCCTGGTTTTTCTTTATGGTCTTAAAT

a score=105684
s chr3           147244267 5510 + 160039680 [encoded data, 5931 characters]
s HiC_scaffold_1 133920095 5117 + 233722169 [encoded data, 5931 characters]

a score=151169
s chr3           147250945 4239 + 160039680 [encoded data, 4477 characters]
s HiC_scaffold_1 133926599 4160 + 233722169 [encoded data, 4477 characters]

a score=100002
s chr3           147263629 4256 + 160039680 [encoded data, 4650 characters]
s HiC_scaffold_1 133941210 4357 + 233722169 [encoded data, 4650 characters]

a score=14940
s chr3           147271294 534 + 160039680 tgagtTCCTGCTGTGCCACCTCCCTGGTACCTCCCTTCTTCCTGAATTTCAAGTGATCTCCATTCTCTC---TTCCTTCATGAGACTATATTTCCTCCCATGAGAACACTGTTTTAATGTATCTGGGCTGTTTACTAAATGCCCATTGGCCT-------------------------------------GGCTGGTGAAGGGGG-TAGGGGTCTGTTGAAGGGCTTCCTTTAGTGGGGAAGTTTGAAAGCTAGTACTTAAAAGTCCATGCTAATGATCTAGTAATTGTTTTAATGGATTTTCAATGAAGTGTGAAGTTCTCTGCTGACTTCTCAACAAAGTGTGAAATATGGTAAAGTTAGGTGAGGAAGTCAGTCTCACATCTGTAAATTTTTCTTTCTCTCTGTTTGCAGAGTCAAGAAGTATTACCAAGTGCCACTTTGTCTGCTATGTCAAGCCACCTGGGGTGTGGGAGCACAAAGCAGAAGTGGCCTTTCTCAGCTTTGACAAAAAGATGGGCTAGGGAAATAGAAAGTCATGGATTCAGTCCTTTCTTTCCCTTAGAGGAAAAGGCCC
s HiC_scaffold_1 133952043 538 + 233722169 TGGGTCTCTGTTACCCTGTCTCTACTATTTCTCCTCTTGTTCT-ACTCTCTAGTAACCACTATTCTACTGATTTCTTCTATAAGAa-------------atgaagataattttttaatg------agtGATTTTTTGAATGCCTTTTGGTCTCTTTTGGATATTTTTTGCTAAAATTTCTTATGCCTGAGGTTTATGAGGGGGACTGAGGGTCTATTAAAGAGCTTTCTTTATTGTGGGAGCTTGAAAGCTAACTCTTACAAGTCTATGCTAATAACCCAGTAATTGTTTTAGCGGATTTTCA-------GTGAAGTTCTCTTCTGACTTCTCAACAAAGTGTAAAGTGCTTTAAAG-TAAGTGAGAAAGTCATTCTCACTCCTGTAaatgtgtctt--tttctgtttgcaaAATCAAGAAGCCTTGCCAAATACAGCTTTAGTT----TTTCAGCACAAATGAGTTTTGGGTGTACTAGCATTAAGCATCCATTCTTAATTCTG-TTTAGCGGTGGGGTAGGGAAAGGTGAGGC--TAACATCAGCCAGCCCTTTTCCACCAAAGAAAGAGCCC

a score=13122
s chr3           147272318 848 + 160039680 AATTAATATTACTCTTGGCCATTTCATGTCCTGTACCTAGTATGTTTTAAGGAGAGGGCTGAATGCTCTG-----GACCTTTCTAGTCCATCCAATAATGTGAGCGAACATCTCCAGGTAAGTGACATTTG-GATGTCATTGAGGTTTCCAG-TGGACTAAGCTATTTGGGGACACACATTTATGCTAACAAAGA-GAGACTGAGATCAGGATAATtactactacttctactactactactactactactactactactactactactacaactacaactactactactactactactactactactactactGTTATGTTGAAAGGGTAGAAAGTGC--AGTTTTTGGTGTTATGAAAA--GTTTTCTTGTGTCTTTCTCTGGTGGCTTCTAAAAGATATGGAAGCCATAGAATAGTCAAATGTTGTTT-------------CTAAGGATTGAAGTCTCTGCCTGTTTTAAGTCTTCTCCTTAGGAGGAATGATACT--AAGTCCATTGAGACAACTGAAATCCCTATGCTTGAGTGGAATTCAGCCGAGGGCAAGGCAGCTATGCCTTAGGCCCTCATCACTAAGTTATCAGGTGGTGTTATGAATGGATTCATCTCATAGATCTGAACTCCATGGAGCTTCTT-------AGCCATCTGTCAGAATAACA-------GAGTGGGGCTCCTTTTGTAATGGACCTTAAAGTAGAAATTT--TCATATAGCTTATT----------GGGAAAAGGAAtagaaggggaataagggagaaggcagaaatgcatgatgggagtatctgaggtgtggtaaagttgcaacagaaacctcagcccaatc-atggagagctcttgattttgagctgccaagcagtgttgctccaaactgggTTAGGAT
s HiC_scaffold_1 133952671 754 + 233722169 AACAAATGCTCCTCCAGGCTTTCTCACTTTCTGTTACTAATATATT------AGAAGACCACATCTTCCAATTGTGACCTCCCAGTTCC---------TGTGGAAGAACATTTTCATGCAATTGATTCTAGTGCTTTCACTGAGGTTTACTGCTCTGTTGAGCTACTTTGGGGTATGCATTCATGCTAATGAAGACAAGGTTCAGTACAGGA-AATCCCTCCT--------------------------------------------------TACAA---------------------------------------TGCTGAGGGAGTAGGAAATGCTTAGTGATCTGTGTTACAAAAACTGTTTTCTTCTGCCTTTGTTTGGTGGCATCTTATAGAT-TGGAGGGCATGGAATGGTCAAATCTTGttttttgttcaaatctccaagGCAAGGAGTATATGCCC--TCTATGTCAGTTCTTTAGTAGAAATACTACTTAGAGTACCCTGAGGCCACCACAAGCACTACTCTAGAGTAGGATTCTGCCCAGGGCAAGGTAGTTGTGCCTTAGGCCCTGGTCAATAAATTTTAAGG--------TGAAT-------------------------CATTGAGGTTCTTATGTTGCAGCAAATTAACAGAATATAACTGCTTTGGGTAGGGTTAC-TTGGAAATGCATATTGAGCTAGAGATTTGATCAAGAAGTTTGTTGAAGAGCACAGGGACCAGCACCAGTAGGGG---AGAGAAAGGAGCAGGAATG---GGTAGGAGTGCTTTAGCTATGGTGCAGATACAACGGTGGCCTCAGCCTGGCCTCCAAAGAGCTCTTAGCATGAGAGGGTCCTGCAGAATTGTTCTAAATTGAAACAAGAT

a score=11669
s chr3           147273391 950 + 160039680 GAGCTCTAATGGAGGCTGCCTTCTCTTCCATGTGCCTTTCACTTT-TAGA--AAACCAGACCTGATGCTCAGTCGCCACAGCAGCTCTGGGCTAGGCAGCCCTGCTTCCACTCATTCAGTGGGGGAAACACATA-CTGAATTAAAAGCAGAGATAAGTGAAGCCTGTAAACTGTTCATAGCAACTTCAAACAAGACTAGAGATGACAGAGTATGACTGGAC---CCTTTACGTAGCTTTGTG--GCCTTACGTTAGCAAGTTGGCAAGAGAACAAAGGAAGTGCTGTCAGCATGGAGTCAGACTTAACCTGTCACTGGCTTCTGAGCTAAAAACCTGCTTAGGATCTGGAAGATGTCTTCCCTCAAACCAATTATGGATTTGATGT-AAGAATGTATTCTGAAAGTTAGCTGGTGTGGGGAGGGTTACATTTACCTCT----CTGCCTATGCTTTTAGGGACTGTC-AGACCGTAGAGTTCAGACAAGTCACACTGGGGCCAATGCTTG-ATTTCTCCTGACTCATCTGTAAAATGCCACTCTCTTCTTGAAGCGTTCTTATACCTGACCTG--CCTGCTTCACTGTGTCAGGTTGTTGGAGGAAAACTGCCTTCCAGGCA-------GACTTACATATGACGAGTACCCTTTCAGTGCATAGTGGCACTGATC-ACACAAGGA----------AAGAATATTTCTAGGTAAGAGGATTCATGTT-----GaaaattcatgttgaaacttaatttccagtgtgaatattaaagacacagccccggaggactcattgggtgatgagaactgcctctcacaaatgggattagggcttaagatcacctatatgagtgctaggcgggagagggtttgtgtttgcttgcttttgtctttttctatatgtaatagcacagcggccttcctctctgaaggCCATAAGGCCAGGACTGTCTTCTCCATCTTCAAACTGTGCCCACGTCAGATGCTGAAC
s HiC_scaffold_1 133955806 902 + 233722169 GAGCTCTGCTGGTAGAtgccct-gcctcaggctccctcgCATTTCGTAGATGAAACTAACCTGGATGCTAAAGCTACATGATTGGCCTAAGATGTGGAACACTGCTCCCAGTTATACAAtcggggaaaaaaaaatcttaaagaaaagcaagaaaaacccAGGCCTGTGGATTCTTCCTAGCAATTTTGAAAGAGACTAGAGATAACGGACTCTTACTAAACAAGTCTATGTGTACATCGGTACCTCTTCACAGTGGCAATTTCACCAAGGAACAAAGCCATTGCTGTTATCAGGGAGTAATCTTTGGCCTTTCATGGGTTTCAGAGCTGACCAGCTGAGCAGTGTGTGGAAGATTTCTTCCACCACAGAAAGCATGGATTTGAAATAAAGAATATATGCTGGAAAATGGCTTTT-------AATTCACAGTGCCCTCTAGCATTGCCTGTGCTGCT-GAGATTGTCTACGTGACAGAGTATAGATCACCTGCTCTGT-----CTTCTTGCACTTGGCCTGACCCAAGCCCTGAATG--------TGTTCAGAGTATTCTgatgtctgttttgtttctgtttcattgaaCCAGATTGTTGTGGTGAGAAAGCATCTAAGAAACTTCTGGAATTTGCATGTTATCCCACCTCTTTCAATGC-TTTTGGTAATAGTCTATGCAAGGGTGACTCACATGGGGCTAT-----GATTTGACAGCTTTTGTTCCCtctaaaattcatgttgaaacaaGA-------TGAGAATATTA---ACACAG----GTATGACT-GTTGGGAGATAA---------TTGAGGAATGAAATTAAGGGCT--------CTCCAT--------------AAAGAGTTCAT-TGTTTTTACCTCTGTACCTTCCCGCATGTAAAGAAATTGTGTTCCTCTTCTCTGTAGGCTGAAGCAACAGAG--------------TCAGAGATGGTTCCACATCAGACACTAAAC

a score=49596
s chr3           147275152 2119 + 160039680 TTTCTTCCCACCAACCTACAGAACTAAAC--------CCATCGCCCGTGGTGAAGCTCAAATTTTTCCTCTAAGCATTTCTCTTTCTTTCAAGT-GTCCACCCTCATGAATATAATGAAATGTCCCTTAAATATTAATCCACATTTGTTATTTAATCAAAAGGCATTTCAATTCTCTTCTTACTTTACATTAGCCTTTTTTTGTGAGACATGATATCAAAA-CAGCAAAGTTCTGCATAATTTATATCctctctctctctctctctctctctctctctctctctctctctctctctcCTTCAAATGCCCATTTGTGCAG--AACTGATACCTTTGTAGTTCCTTGGAGAATATTACTGTTAAATCACTCCCCTGGGTCATTCTCCCTTTCC-TAGTCAATAATACAATAAATCGTTTTCTGGAGGCATGTAGAAGATGCTGAAGCCATCTTTCAGAACTCCAAAGACTACTCTGATTTCCCAAAAGCTTTACTTTTT-GTCCT--------GGGAAACATTAGGTCCTCCTTTCTAGATGATGCTCCAGTGTTGCTGTTGGCTCA--CTTTGATTTCGAGTTCTGAATCTAC---------------------CCCTTAACTCCACAGCATCTGACCCC--ACCTTTG---AGTCTCTGTATGACTGCTTGCTTACCTGGTAATACTAAGTAGATGCATTTGTGTTCCTTTACTTAGTAGATGCTCATTGGGGAGGCACTCAGCTGCAGCATGCCTTT-ACTTAATGTGACTTTTAGAGGTTCCATTTGGGGATCCTTGCACTCATAGAGCTCTGCCCTGTTTTCAGTGTTGTGTC-ATGAT-CTGTGAATTGAGAACAGATGTCACTTCAATACCACTTGGAACTTGAAGACCAGCATGCGCACAGGGTCATAATCAGGTACTGGAGAGTACACAGTGTCAGTGGGCAGAGAG-CTGGAGCATTGCTCAGCCCTACCAAAGGTAAATGGGCA---GTCACTGTAAG---AACTGCTAGCTGAGAGAAATCAGCATGGAAAATATGGGGCTACTTAAATGAAAGAGAGGAGAGATGGTAAAGT--GGAGAGATGGCATGA----------AGACACTCTGA--------GaatattttaaaatataaatattattCATACATAAATATCATTTGATATTGGGCTAGTGAAATGGGCAGGGAAGTAATTAG-AGTAACTGCAGAGAGGGAGAAGAGGCTGTTGGAGGTGGG-----TGGTAAA--------TATTCTGTGGTAGGTAGCTTGAGTTTTACTTTATA-CAGAACAGGAACCTCTGTAAGATTTTTGAGTGGGAGTGTATGCAACTCCAAGCTTTAAAACAGTATTCTAGGGCATAAGGAAGATCCATTGCAGAGGAGTGGGCTCTGGAATACAGGAGTCAGGTTGAAACCAGTTGCAGCTGTCCACAGGAGACCTGTGGATGACTGGCTTTCAGATGGAAGCAGAGTTGAAAGAAGGGGTCCAGC-TGAACATTCTGTAGGGAATGATTGTTGTGGG--GGTGAGCAGATGAGCTGTCAATCACTGTGGGTGGGTGTAGATACAGCCTGCATAGTTGTACATGGAGTGAGAAAGCCATCATTC-TTGATGAAATGATGCCCAGACTCTCTGAGCACCATCAATACATTAAGCATCAGATCCCACAGAGGTCACAGTCACATGGAACCAGATTTCCTGCAGTGAGTCCAAAGCATTTCTTTACTCACAGAAGTTTCTTTTTTTCTTCTCAAGAATATCTGAAGCTTAATTCCAGCGAGGAGAGCTGTCATTT-CTTCCCAGACAGGAAGCTGAACTGTCTTTTCAAATACCCCCGGGCTTTCTGAACTCACAAACCTTTCATTATAAGTACTTGTCTAACTTACAGGGACGTT--ACAGAGTTCTCACCCAGTGGTATGCTTACCATTCTCTTCACG-TGTCTGAGCGTCTGCCCTTGGCACATGGACCCCTCAAAGAAATCTGTCTCCATAGAGGTCAAGGGAGTTGTTCTTTGAATTTAGAGGGTGGGTCTCACTAAAGGGGATGTGATGTTGTGTTTGCTCAAGAATGCTCATAGATGTGTTTTGTAT-----------AGAAACTTCCATAACTGCCTAAAGAAAAACA-GTGAGCattttaaaaattaattcatgaaattattttaaatatttatGGAGATTTTACTCTATGTGCTGGTGCT
s HiC_scaffold_1 133956915 2049 + 233722169 TTTCTTATCATTGACCtgccaaacaaaataaactaaatcATTGCTCATGCAAAaccttaaatatttcttttaatcatttctcttcctttttagttGTCCACACTCATAGATACACTGG-----CCCTTAAATATTAATCTGGCTTTGTTATTTAATCAAAAAGTTTCTCTGCTCCCGTCTTACTTTACGTTAGCCTTTT---GTGAGACATAATATCAAAAGCACCAAAATACTGCATAATTTATATCTAcagcttct-------------------------------tctttctctttcaaacTTCCATTTTCATGGCCAAGTGACACCTTTGTGACTCCTTAGAGACTATCA---TTAAATCATTCCCCAGGGTCAGTCTTCCTTTTCACAGTCAATAATACAATAAACCATATTCTGGAGGTTTACAGAAGGCACCCAAACTCTCTTTCAGAAATTCAAAGATAATACtattttttcaaaagctttaGTTTACAGTTCTTGATAGTGGGGATGTATCAAATC-TCATTTCAAG---------CACTGCTTAGTTTGTCTCAGTTTTTATGTTAGAGTTCTGGCTTTACTCATTTAACTGTTCGGATTAACCATTAGCCCCACCTTGCCTGACCCCCAACATATGttcatattttatgtgttttattcatTGCCTAAGAATGCTTCATAAGTGTATT------CATTTGTTTAAGAAATGTTTATTGAGACACCACTGCTATACTGAATTCTTTGGAAGTAATGGAAATTTTAGAGGATCTTATCTAGGAT-------------------TGCCCAG-----AATGTGGGGTAGATTATATTGTGAACTGGCAAAAGCT--------------------AACCTGGAGACAGGA--GCATGTAGGG--ATAGTGTAGTA-TAGAGAGTG---GGGGGCGGGTAACAGAGAAACTGGGTGTCTAATCATGCCTACTGAGAGTCAGGGAGGACTTGACATAGTGAATCTGATTGATATGTAAGCTAAATCTTTAAGAAAACCAAAATTCTCC--AAGTGAAGGAGTGGAACGTTGTCACAGGCAGAGGAAATAACGTAACTATAGGTTTGGGCATTCTGAATACATAGGAttactagaaaaattaaataatg---------aaaaataatttgctaGTATGAGTTTGAAAAGGAGAAGGCAGATATTGGTAGGTGGGGTGGACAAGGAGATGGGAAT-TTGGACTTGAGCCAACTCATATAACACTTTTTATGCTGTGATAGATCACTCT-TTTTTATTCTGCAGCAAACCA--AATCACTGAGGGATTTT--AGTAGAAAATGATTTAACT--GAGGTTTCAGTCA-CCTTCTGACGTACGAAGACCACATAGTTGAGGGCAGTGAGTTCTAGACGAGATAGTTCAGGT-GAAGTTGGCAGCTGCCATCCAAAAGAG---TAAGGATAACTGAGACTTGGGTAGAAGCAGAATTAGAACAAGGATGCCAGTATGAAAAGTCTTCAGGAAATA-----TGCAGGAAGGAGAATGGATCAGCTGTT--CTGCCGTCCAT-----CCGGTACCTCACGGGTGGTCGT---TGGATCTGGAGAGACAACATTCCTTCCTGAAAGGATCCCCAGCACCTCAATGCACTGACAGTACATTAGGCATCAGATTCCACAGGGGTAATGCTCA---GGAGTCAG-----------TGGATCCAATGCATC-----ACtcacacattttccttttttcctctt---gaatatCTGAAGCTTAATCCCAGTGAGGAGAGCTGTCATTTTCTTCCCAGACAGGAAGCCGAACTGTCTTTTCGAATACCCTGGGGCTTTCTGAACTCACAAACCTTTCATTATAAGTACTAGTCTAACTTACAGGGAAGTTACACAGAGTGCTCACCATGTGCTGTGCTTAAAATGCAGTTCACGAAGTCTGCAGTTCTGCCCTTGCTCCATGGGCCCCTCAAAGAAAGCTGCCTCTGTAGAGGTCAAAGGAATTGTTCTTTGAATTTGAAGGGTGGGTCGCACTACAGGAGA----GTGCTCTCTGTGCCCAACAATATTCATAGACAAGCATCATATCCCTAATCTAAAGAAACTGTAA-GACTGTCAAAAGGCAAAAATacgaacatttaaaaaatt---------aattacttaaaatatttattaagaatatGCTGTATGTTCTCGTGCT

a score=76680
s chr3           147280635 4711 + 160039680 [encoded data, 4990 characters]
s HiC_scaffold_1 133960215 4362 + 233722169 [encoded data, 4990 characters]

a score=225790
s chr3           147285512 9099 + 160039680 [encoded data, 9752 characters]
s HiC_scaffold_1 133965225 8847 + 233722169 [encoded data, 9752 characters]

a score=31297
s chr3           147297278 932 + 160039680 TGCACAATTGGAAGCTAACCT-----CCTCC---TCCCTCCACTTTAACAAGACTGAGCTCTGATATTTGA-------------GTGGCATTACCTGCAGACACCTCT-ACAGATAACTGACAGGTCACCA-CCTGATTGATTGGAAATGAAGTTCCAGGAAGCATCCTACAGGTGCTGCAGGAGGCGGAGTGTGTTAACATTTCCCCTCCGCACTCTGCCTCCCCACAAGCACACAGAAGGAGCACACCCTCACCTGTCTGCTCCCAG--CACAGTCTCATCCCAGAGGTAGCACTT-ATTTCTGCCAAGTGGCTTCTCTCTTCTCCAGCATGTAC-----------CTTCAAATTAAACAATGACCTCTCACTTATCATCAGGAGTAATACTAGGCTGGCTGTGATCCGGCCCCAAAGCTTATCTCCTGATTCATGTCACTGACAACCACGGTTCTTCAATAGAGGGAAGAAGCCCTTTGCTCCTCTGTTCTCGTCATCAAAGCCAAAGAAGCTCACTTTCCTCAGGGCAACATCTGGCCAGAATTTATACGGTAGGCATGGAAATACTATTTTCTACATATTATGATTTCTTTGCTTTGGCAATGCTGAAAACGGCACCCTGCCACCACCAGAAACTAACCATGTCATTTTTCTCATGTCAACAAGCATCTTGCCAACAATGATTTCCTGTAATTCCTTTTCTCTTTTAGAGGGAGTGGCTGTTCCACTGGCAGAGCACTTAAGGAAAAAAACAAAAAAACAAAAACCAACAACAACTCATCCCATCATGTGGGTGCCT----GCGCAGAGCCCTCTGGAGTCATCCCACGTTGATCCTCACTCC----------AGAGTCACCCCACATTGATCCTCACAGCACCTGATAAATCATTTCCAAAGCTCTTTCCACAATCACTGA-CAAGATGACCTCACTTCCCAAACCACTTCTGAGCTGCCCCAGCTTTTCATTTGTAA
s HiC_scaffold_1 133975980 905 + 233722169 TGTGTACCTGGAAGCCAACCTACACTCCTCCAACTTCCTCTCCTTTAAGAAAACGGCACTGTGAGACAAAACTAACAATCCACAGTGGCGTGATCTGAGGACACTTCTTGCTGGTAACTGACAGGTCACCAGACTGAAAGAT--GAAAGGAATT----GGCCACCTCCTGCAGTTGCTGGAGGACGTGCGGGACACTTTCATCTCCCC-CTGTCCCCTGCCTCCTTTCTGTC----------------------CCTGCCCGCCCCCCGGCCACAGTTGTGTTCTGGAGGCTCCACTTTAATGCTACCAGGTGGCTTCTCTCTTCTTCAGAATGGACTTGGAGCTCTTCTTGAAATTAAACGGTGACCTCTCACTTATCTTCAGGCCTGTTGTTGAGCTGGCTGTGATCCTGCCCCAAAGCTC-TCTCCTGATTCATGTAACCAA-AACCGGTCCTCATCCATAGTGGGAAGGAGGCCTCTGCTCCTCTGTTCTTGTCATCAAAGCCAAAGAAGCTCCCTTTCCGCCAGCCAACATATGGCTAGAATTTATATGGTGGGCATGGAAATATTCTTTTCTAGTTATTATGATTTCTTTGCTTTGGCATTGCTGAAAATGGCACCCCGCCACCACCAGAAACGAACCATGTCATTTTCCTCATGTCAACAGTCCTCTTGGCAACAACGCTTTCCTGTCGTT-CTTCCCAATTTGAGTAGGAGTGGCTGCTCCACTGGTGGCAAACGTCAGGAAAATTCTA-----------------------------CATCATCGGGGTAGCTCTGGAGGTAGGGAGTTCTTACGCCAGACCTCTTTAGTGGTCATTGCTACAATGATGAAAGCCATCC--------TCCTCCCTTTACCTGATGGCTC--TCTGACAGCTCCTTC--------CTGAGCAGGGCAGTCTTTGTTCCGAAACCCCTACCGAAATGCTCTGGTCTCCCATTTGAAA

a score=48230
s chr3           147307341 2631 + 160039680 GAGTAAATATCTCTCATTTATATCATTCTAGAGGGAATTCCAGAAGGTATCGAGGTCTATATTGCTTGGGTGCTTGGGGTAACACCAAGCAATATAGACCTTAAAGAAATACAGGCTTATAAATAGATCCTGTAGAGTATCGGAGAGGCTGTGCAGGAAAATAAGATAATTTGAGAGAGCAGCAGAGAGAGAGCTAACTTGAAATGATTTATCGACTTGTGTTttcctgagaaagtaccatggaactggagtgtt---gagaaatatgggtgttagtcagtcaaagagtacagagagtatattccatgta---------------gatggcatggcaggcaggactctgaTCGTGG----AGAAACCTATGCTCATGCTAGACCTGAGATCCTGCAGGTTCATATAA-----AAGTATGTGAGCAGGCCATCTCTAGGATTGATT------AGCAAGCCTT-----CCATCCCAGTCATTTTCTTTCCATCTCCTG--ATTCTATGTGTCCTCTTGCCCT-ATCCTCAGACA------CTTCATTTAATTGCTAGGTTGGATACTGGAAATCACTAGGCTACATCAT--TATTATAGGTTCTGCTCAGATAAAAAG---------------------------------------------------------------------------------AGACTTTCTCATTTAAAAAATCAGCAGGATTTATATATCATTCTATATATTT-TTGCAATAATAACACTGTACAGTC-----------------TGTGTTG----GTATGGGCAGAAGGTAATTCACCCTACACTATGCACTTAAAGATAGGCAATATCAGAGAAACTGTGAGAGAT-----GATATCAGAGGGATATGACATATTTAAAGCAGAATCTTTCAGGTAATATTTAG-CATTTAGAACTTAAATAAACCAAAGTGAGAATCTATGGTGAATTTTAATCAGAGAGTAACAAAATTCTTGTTAATTACTGTTAAGATGCCTGAGTTTTGAAGTAAACAACCTTTTCTGTCCTGAAGTATGTGTCAGCAGTGTGTCCCCAAGTATAATCTGAGCAGTGCCACTATCACCCTACAGTTGTA-CTTCCCAAGACAGGGAACCTGCCACCAAGGT----------ATCACCCACATACAATGAGTCACTAAGCCCCAAAGACTTTCTTTCCTGATTCTCTTGGTTTTACCTTGCTTCTGCTTTGTACAGATTGTTACATCCT-GCAGATTCTTATCCAA---GACTTTGGCTCTTGTCATTGTCTTCTGCTTGCTTCTGTTTTATTTTCTCCTGGCTTCTAAGTTATCAGACATGGTGTTGTCAGATTGTTCTTTCAAAGATATGGCTATCTTCATGTCACTCCTGTACCTAAGAGCCTATGATGG-TCCCTATCATTTAATGAATCACAGTCA-----CACCGCTCAGCACCCAGAGCCTTCTGTCACTTGGATCTGTTGTATCTGTCCAGCCTTTCCTCCATTTCCATTCATCAACACGAGACTGCATAAGACG----TGGCTCGCCATACCTACCTCTGTAGGAGTGAGAGCAAGGTAGACTCTTATAAATCGCTTTTCAGTCACAGAAGGATGGAAG-CAGAGGATAAAGAAAGCAAAGTGAGCCAGTTAGAGAAGCAACAGCTAGACCAAAACCAAAACCAAACAAAACAAGAATTAAAAAAAAATGTGATCAAAGCCAATTT---GTGTGGTCAGGATGGCC--TCTTAGCATCATAGCCAGGTGTTCACACCCAGAAAAAG-------------AGGTCAAGGGGTGGCACTGGCTGGATGGTAG---ATATTTGTTTAAGAGAGCCTTTCCAGATGATAATATCCAGTGCCCTTGACATAGTGTGTGGGCTAGCTCACAGGTTTCTGGGAATTTGCCCAGAATTTTTTAGGGTCAATTGGTGCTACAGAGAGATGATGGATTATGCAGAGAGGTGCAAATAGTGTCGGGAAACAGGATCAG-CGCAGGTAGGATCTCATTACTTAGTTTTGTTTAAGTGGCTTTTTTTTTTTAACGAGGGCTTGGGATGGTATTAAGAATCTGCAGAAGTGAAAAGCTCTGCCAGGAGGAAGGGAATTTGATAAGTTGT-AAAACGTCCTGAAATTCTGAGGAACATGAAGGAAG----------------------ATAAAATAAT----GGGT----AACTTG-------------TTCTTTCCTCCATAGATATGCTGTGGCTAGCACATCATTGTACTAGTGACTACTACTTGCTGTGAAAAGCCATTATTGGCATAGACTTCATAACAGTTTTTAAAATAGTAGAAATAAGGCTTATTTTGAACAAAACAAAGAACAGTTTTTGCTT---GATTTAAGAAGTAGACCAGTTTTATTTATTCAAGTGGACATTTGGGAAGGATATGATGCAAAGCTACAgtggttggaagaatgatgg-cctcccaaagccttctacgccct---aatccc-------------acaagagggacatttcatctgcaattgagaaaaaaatacaatggagctgatgagatcagccttccccatcccacgtgggcttgctctaatcacggaggcctttaatgttgaagcgtctctcccagacaggagtggtcagtgggagatgt-gctatgg-gaaaagatcagagagatgcaatattgt--actgtgaagatagaggaa-gggatcatgagcgaaggaatgctgggaggctc-----------------------acgagttctt--ccggaaatcacagaaagaaaggcagctccatccatgctacaact-----cagtcctgtgactcctgtgtccgacacctggccaataagacacgaagatgatggatttgtgttgtttta
s HiC_scaffold_1 133980340 2724 + 233722169 GAGTTTATGTCTTCCATTATTATCATTCTAGTGGGGCATCAAGT-GGTACAGAGGGTAAT-----------GTATGAGAAAACACTAGG-AAGGCAGatcttaaataaataaaggc----------------------------------------------------------aggGACAGCA-AGAAGGTCCTAATTTTG--TGATTCTTCAGGACATGgatatttgagaaaaaattatttaacccAAATCCTTGTGAGAAA-ATGGGATTTAGCCAGGCCAAAAGCAGAGAGAA-GCATTCCACATACATGAGCAGGCTTAAGGTGGCAGAATAATCAAGACTGTGGTAGAAGTGACAGCAGCCTAAGTTTAAGCTAAAAC-AAGATT-GATTGGTTAGTATAACAGGGAAGTTTATAAAATGGATGTAGTTGGGGTTCACTGGATAGAGAGAGCTATAATGCTGAGCTCCTTGAATTTCTTTTCATCTCCTGGTATTCTTTGCCACTGCTTGGTCTCATGCTCAGGAGAACTTCTTCCGTGTGTTTGCTAAGTTGGTCTCTAGTAATCATAAGGCTACATTGTAGCAATATAGCTCTAGCcctgaaagagagggagacagagagaaacagagagagacagagagggagagagagagagagagagagagagagagagagagagagagagagaggagactctcttattttttgtttaattagcATTCATATATGAGATCCCACATTTGTTAGAATAACTACAATATGGAATCCTGGGTTTGACCAGACATGGGTTAAAATGTATAGGTAGAAAAGAATTTGGGCTGTAACTTGTATTTATAG-TATTTACTATCAGA---ATTAGGAGAGATTGAAAGATGTTAGGGT---------TTTTCAAGGTGTTATCTTGCAggtaatgtaaaaatatttggaagttaTACTAATTGAGATGAGAAGCTATGATGGATTTTAGTTGAGGAATAACATTAACCCAGTTCAAT-----------------GTTTCAGATCAGTTTATCCTTCCGGTTCCCTTATCTGTGTCAGCAGTC--------------------------CCACCATCTTCCTATGGCCGTAGCTTTGCGTTTTACAG---CCATCTTCAAAGTCTCCCTCATCATCACCCATGTAAAACAAGTCACTGAGCTCAGACGATTTCCCTTCCTGAAGCCTCAGGATCATCCTTGTTTCTGCCTCATACACCCCGTCACAGCCTTGCAGTCTCTCATCAGGTTTGACTTGAGTTCTTGTAATACTCTCCTAACGggcttctctttattttctgctgGCTTCTGAGTCATCACACGTGACACTGCTAGACTGTTCTTTCAAAAATAGCACTGTCTTCATGTCACTCCTCTACCTGGGAGTCCATGGCAGCTTCCTATCATTTAATGAATCACATCCAGTCCCCTCAGCCCAGCATCCAATGCCTTCCATCATCCTGCTCTGCT-TATC-----------TCCCTGTTATCCCTTCACCACCATAAGGCTACAGCGGGCAGAGCTGACTCCCCAGCTCTACCACTCCTGGAATGGAGGAAAGATGAGCTGCTATAAATCACTCTgcaggaagaacagaacagaagaaaggagaggaaaaaagaaagatgaggtGCTCTTTTAAGCTACAACTGCCTTAGATAAAGGACTGAGTGTGGGTGG--------------GTGGCTAACTCGAACTCATGGTGTGGCTAAGCCAGCCTTTCTGAGCATCCTGGGTAGGTGTGAGCGCCCAGGGAGAATACCCAGCTCTGCATTTTAAGGTGAGGTATTAGTGGGAAGGAGGATAATATTTGCTCAGGGAAGCCTTTCCAGTTG-TCATACCCACGCTCTCCTGCAAGATGTGTGGGCCAGCTCATAGGTTTCTGGGAACTTGCCCAG-ACTTTTCAAGGTCAATTGGTACTGCACAGAAATGATGGATTATCCAGAGAGGCGTGAATActgtcaagaaacaaaatcagccCCGGGTGGGatgtcattatttatttttgctc-agtGAC------TTTTCAGTGGGGGCTTGAGATAGTGTTTGGAATTTGCAAAAGT-AAGTGCTATTACAATAAGAAGAGAGTCTGGCAACTTTTAAAAACCTACTAAAGTtcagaggaaaatgaaataaaaaaattgcatCTAAGTcctaatacaaaataatataggGATTAAAAACTTAGCTCAGAATCACTGTTTTACCTACCTAGGGTTGATTTGATTAACTACTCACTGCATTAGTCACTGGGA---GGCATGGGCAGACATCATTGGctcaaattttataataatttctacAATATTTGAACAGAAGTTTATTCTG--TGATACAAAGAAC-----TTACATTAGGTTTTGAGGAGCAGAAGAGTTCTATTTGTTCAAGTAAACGTATTAAAAGACAAGGGAACAATAACTCTGTGATAAGAAAAATGATGGCCCCCCCAAAGATGACCATATTCTCACAGCCCCTAGAATATGCATGGCAAGTGGAACTTCGCATCTGTGACTGAG---ATTGTAGCCTTGAGCTGGGGAGATTAGCCTTTATGAT-CCAGGTGGACTCAGAGGAATTACAT-GGTCTTTAAAATTGGAGCAACTTTTCCAGCTGGGATTGGTCAGTGGGAGATGTAACTATGGAAAAAAGATCAGAGAGATGCAGTGTGGTTGGGTTTGAAGATGGAAGAAGGGGATCATAAGCCAAGCAATGTGGGGGGCCTCAGCAAGCCGAAAAAGCCAAGGAAACAGATTCTTTCCTGTAGCCCACAGAAA-------AGTTCC-------CAGCAACTGATGCTAACCCAGCAAGTCCTGGATCAGACCTATGA--AACGGTACAagaa--------atttgtattgtttta

a score=30961
s chr3           147310578 1229 + 160039680 ttagtcacagcaatgagaaaacagctaa--ggcaGTAATATGTTTCAAATGAATTGAATTAATCTAAGACTTTCACAAGAAAATAATAGAAACAAGTCTTGTCTGACTAGGCCTGTAGGTGGCTCATTTCctaacacttattgagcacttgctacacactagacacttttctatgttctttCATAAATCTTTTCCCAATATTAATTTAAGACAATTGTGATTAGTTGAAGAA----------AAAAATTATAGTCATATATTTAGTAAATAGAAATGCTGAATTTTTAACTTGGAAAACAGGGTATAGGACATTGCTTTGTTAGTTC----AATagtggtacacacatttggccatgcattaaaaccacttgaggtatgttgtccaaatctcaa-tgttca---tatactttatatccgttaaattggaatatttgactctggattcaggcatcaatagtcttttaaagatttcaagtggacaaaagttggggaatcactgAATTTGATGTGCTGTCCCCCTAATCTACAAGATGACTGTAGTTATTCATGTGACTAAACAGAAAATATCATGACTCTGTATATTACACATTGTCCTTGACTTGAACTGGGTGGTTTTTTTGTAGTTAGAAGAGCATCTGTCATTGGCTAGTTGAAAGGGCAGTTGTTAGTTAATCCAAGACAAAAAAAAAAAAAAGCTAGAGTAGAATTGATTGTG-ATGTTCACACAGTTTGAGCTGTCAGTCAAAATAATGGAGATCCAGCAGTGTGAAGACCTTTCTTAAAACTGGACAAGAAGAAGGGAGAAGTGAAGATCTTAATCTGGTGTCTAAAGCCAGCAGGGAAGGGTGAGCTGGCAGGTGGAATCTGTGATCAAACTGTCTGTCTGCACATTTTGTCACTGC----GTGTAAAGCCTGTGCATCGCTCTGCGGTTCTTGCCTGAGTTGTGAGGAGGAGCTGAACTCTCCTGGTAATGCAGGCACTATGTCCAAGAGCCTGAGTGCCCTCTGTCTGTGCATCCC-ATGCTTCTTTACACCACACTG-------TCACCAAGGTCACCAAACCCTTCAGCAGGTCAAGCTGACCACCTAACTCCCTTAAGGTTAGAGAACA------AAGTTGTAACACTGTTGGAAGTTGGGCTGTAGTCTCTGGCTGTCAAAGAGATAGATGAGCGTTCTCTC----AAATGACATTTATCTGGGGTAGATTACCGAGCTGCCCCTTGGGCAGGGC---AAACTGTCAGTTTCTTACCCTGTT
s HiC_scaffold_1 133983084 1172 + 233722169 TTTGTGGCAGAAATGCAAA----GCTAATGGAAAAAAATATGCTTCAAATAAATGGAATGGCTC-----CTTCTgcacttaaata----------------------tatgtttataagTGACTCATTTg-tagtatttattgaggatttacTATATACTAGGCACTTGACTATTTAACTGTATTAAATTTT---CAGTGACTATTTGAGATTAATGTTATTCATTAGAGAATTAACCTTTCCAAAATCATAGTCATA------GTAAATAAAC---TTGAAATTTATACTTGGAAA----GTTGTAGGAC-TTACTTGTTTAGTCCCTATGACAGTAGTTTTCAAACTTAGTCACACATTAAAATC-TTTGTTGGAGGCTTTACAAAACTCAAATGTCTAGATTACATTCTGTGGCACTTAAACTAGGGTGTCTGGCTTGGGAGGAAAGCATCAACAG-ATTTTAAAGATTCTCCATGATTCTAATCTG-----TACCAAAATTTGGTATAGT-TCCCCTCAGACTATAAGATGCATTTACTTATGTTTTGCACCTAGCAGAAAGGATTAAAACTGT---CACAAAAAATTGCTCCTGACTCTAAATGGGTGATTTTGTCATAGTTAGTA---CAACTGTCATTGGTTAGTGGAAAGGGCAGTTGTTGGTTAATCCAG---------------AAACTACAGTAGAATTGATTGTGTATGGAGACACCATTTAAATTGTCAGTCAAAATAATAGAGGGCCAGCAGTGGGAAGACCTTCCCCCAAAACGGACAAGAAGGA----------AAGATTGTTATCTGGTATCTAAAGCCAGAAGAGAAGCAAGAGCTGCCAGATGAGATCTGTGATCAAACTGTCTGTCTGGACCTTTTGTCACCACTATTGTTAAGTGTCTGTGTGCCTTTATGTGTGTTTAGCATAAGTC---AGAAGCAACTCAGCT-TCCGATTGAAGTTGGCGCTGTGCCTGAGATCCtgtgtttcctttattttgctgTCCCTGGGTTTCCTTGTGCTGCACCGGACAGCTTCTGCAGGGTCACCCACCTCATTA----GTCTAGTAG--CATCTCCCTCT-----GGTCAGGGAACAGACACTAAGTGGGAGTGCTGATGAAATTTTGGCTTCAGTCTCTGGCTGCAATAGTGCCAGAAGACTGCTCTTTCCTTTAAATGATGTTTCCAGGAGCTGCATCACCCGGCTTCCCCTCGGGCAGGACAGGAAATTCTCTGTTTCTTAATCTGCT

a score=39444
s chr3           147312812 2452 + 160039680 AAGTGACTTAGTAAAAATAGCCT--AAAGCTACTGAAGATTGTGATCTTACATAAATAATATTACACAATATCTCCCCACACACAGAAAATTCCTACCTCGACCTACTTTAAGGTGGGAGAAATCATG-ACTGTTTTCTGAGAATTCCCCTCGGTTTACACTGTCCTTGTTGGTAATTTCAAAATTCCATTTTCTCAAAAACCAATTTGTTTTTAATACAGTTAAAGCTTATGCAGTGCTTGG-TAATTTCTCCAGG-AATTATAGAGTTTCCT----TCCTAGAGATAATTTTGCATAGCTTATAGAGACACACA----------------------------TGCACACAGACACAAACAAACTTATCAGCCCATATCAGTAAATGGCCAAAGCCCCGAGGGAACTATGGAAAATTACACTTGGCTGTAGTATAATGGTATCTGCAAGGTATTGGCTACTTATCAATGTTTATAAACAGGACACAAAAGCTTAATTTTATCATAATTGAAGAGCAATTCTGGGAAATTCATGTAATTTAATGTTTTAACTGTCTTTTATTGCCATATGTAAATTGACTGCAAAACAGCAGTGCCTGTTGAGCAGAATCTAATGCAGTACAATTTCCCTGGAACACAATTTAAATTTCAAATCATGCTTAATGCTTTTGTACACGTCACAAGTCCCTTGTATTAAAGCTTATCATATGGAATCGATATATGTCAA----CCGGCATTTGGAGaaaaacaaaaacagaaacgaaaacaaaTGGGAGCAGGCCATTTGGAATCCTGTCCAAAGGTGTCAGCTCACCCTGGAGGCTTCACTCCCTCTT--ACCTGGACTTGCCATCC-CATCTTCTCATGTAGCAGTCCCTGCCTGTGTCAGACATTCAGAAAATCTCAGGATAAACAGCTTTCTGCAGTTGCAGTGTGCGACCTGAGCTGACACA----------CCTTTCCATTGTTAGGATTCATGGGGGATGTTGATACATTGTAAGACATA--TTGCACAT-CTGTGGCTGGTCACTTCTTGTCAGGATGATCTGTGCTTACTGGCTTCTTTCTGAACTGTCATTGGTGCTTTAGTAACATCCACGGCACTGTGTCCTTCTTATTTTACTTATTAGTGgtgtatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCACATGCACAAGATGCACATGTGGTTAGAAAACCACTATTGGAGTTGTCTCCCTTCCCTGTGGGTTCTGGGGACAGAGCTCATGCCTGTTGAGTTTTCACAGCATTCCATTTCCCCACAGCAAGTACTTTTATTCTATCTCCCTGCCCCCAATGTCTCCTTCTGCATGAAATA--ATGCCCATGTCAAAAAGGAGCATGGCCTGTTGGTCTGATCTGATCTGATTCCCGTGCCATTAATATTATACAACTGTAAAGGATTAGTCAAGTAGAGGTGGATACAAA--CCAATGAGATTTTAGGA-TGTTGCTTTCAGAACCAAGCCAGGATGTCTAACCGTCTTCCACTGGACCAGTGACGATGGTAAGGCATCAC----------CTCA-CCGTGGAAGGTCAAGCCTTAGAAGGAGAAGAGGCAAAGTACCCTGTGCAACAAACAATGTGTCATCGAATTTGACTTTCTAAAAATGTTCTTTACTTTTTTTTTTGCTTAAAAGATGACATTAAACAAACAT------TCATAG-AACAAAGTGGTTGTTAATTT--TAATGTGTCTGTAAAGATTCCAGAATACAATTATTAAATCGGACAGAACATAGTTACTAATGTGAAAGGAAAACCTGAGAGGCTCTTGTGTATCCTATAACCTTATGAACCCATAGTAGACCCGTTTTATTTATTTAG------TTAGTTTTTAGCCTTCCAAAAATATTTACACTTATTGGGTAGGTAGTTGAAGTAAAATGGTTTTAACAATTTATTTGTCGTTTTATCCCTCCTCTGTTCCAGACTTTAGACACTGAATGAT-GGACCAAAGGGTGATGGACCCCAAAGGTGCTAGAGAACAAACAGG--------AAAACATTAATAAAACTGCAATCGTTTTTTGGTGGAGGGGGGC-----AGCTGGACAAGCAAGGACCTAGCTCCTTCCTGATGGTTTCTGTCATTGCCAACATGAGTTCAGAAACCTGAC-------------TGTTCCAATAGCTGGCAATGCAGCTG------TGGATTTTTTTTTTATGCCGAGAATAAACCTCTGATTCTTATAACAATGAccctacttaagggagtgagacccagctctgtgtaccttctactataagcatctaac--tgagcaatgtcaatatttgtctttcctcatccccccaaccttgggagggatggt------ctgtcaactcttgcctgtatgaaactttgttg---------ttccattgctc---gttcac------ttttctaaacctcaagtagcaattctgt--aaatacct-----------act---caattctttctgtaaaaaGATTCACTTGACACAATTCTTAACATTAATTTCAAGTGTGAATTCTTCTTTTAAAGGCCTACCTGGATTATCTGTAAGAGTCAAAGA
s HiC_scaffold_1 133985063 2273 + 233722169 aaatgactta---aaaatatttttaaaaagcactgaga--CGAGATCATGCATAAAT-------CATAAAGTCTTTA-----ATACAACCCTTCTACAAGGACCACCTTTAAAACTAGGGAAAATAGGTACTGTTTCCTGAGAATTCCTTTCT-CTTGCATTCCC----TTGGTGATTTCaaattttcactttcttaaaA-CCAATTggtctttaaaatagttaaatcCTATTCTGTGCCTGACTCCCCTCCCCAAATAATTGTatggttttctcttttcttggagataattttatacaacttttagacacacacacacacacacacacacatacacacacacatacacacacacacacacatatctaccAGCTCCTATTGGTAAATAGCCAGAGCCCTGAGGAAACAATTGTAAATTAAAATTGGTTATAGTACAATGGTATCTAGAATGTATTGGCTACTTACCCATGTTTATAAATAGGACACAAAAGCTTAATTTTATCATAATTGAAGAGCAATTCTGGGAAAGTCATGTAATTTAATGGTTTAACTGTCTTTTATTGCCATATGTAAATGGACTATATAATAGCAGTAAATGTTGAACACAATCTAATGCACCACAATTTCTTTGgaacacaatttaaatttcaaattatgcTTAATGCTTTTATACATATCATAGATCTTGTTT-TTAAAGCTTATCACATGGAATTGATTTATACAAGGAATCTAGAATTTgg--------gaaaagggaaatgaagagaaat-agAGTTTGCCATTTGGGCATCTGATCCAATATGCTGAGGAACTGT----GTCTTATTCACTTTTAAATCAcgtttttctttctgcattttaaacTTTAGTAGTACCATCCTATATTATATATCTAAGTGATACTAAATAAGAAGACTTCCTATTATTGCATTGT--TATTTAGCCTTaagcatttcctttttcttttgtattattaaTTCCAATAAGAGAAGGTGATATATAATAAGACACAATATGCCCATATTGTAGGGGACGTCTTCCTGTTGAAATGATTCAAGA--ACTGTCACTTTTCAACTCTGCCCTTGGTCCTGTATCTATTTCTACACTAACATATTTTTCT------------------------------------------------------------------AGATGAACTAATGTTAagtgaagaaa--------------------------------gggaaaagtgcT------------GCTCTCTTTGGATACCATTTGGCTTCAGCAA-----TTTAT-----------------------------------AATTAAGATACAGATGTCAAGGAGG------------------------------------------TAAGAAT---------TAAAACATTCTTTTG--AGAGGCAGTTAGAAGGCTCTGTGAGACTTTAGAATTGTGGGAATTAGAAATAAGCCAGGA------------TTACTTTCGCCTATCAGCAGTGGGAAGA-ATTACTcttaaaaatctcatttataaaattacaaatcTTAGAAGGGAACTGTTGAAAATATATTGTGCGCACAGTAAGGTACTTTCAAACtcgcatttt------ttttttaaattctgttttctgcATCTACGAAACCTTTGAACAAAACTGAGAAACTATGGAAATAAAATTGTTGTTAGTTTAGAAAGAAATCTTTAGA-----TAAAACACA---ATGGAATTTACCAGCACGCACTAAATACTTCCCACTGAACTGCTTGGAAATCTTTGTTCCTCCCA-------------CCATAAT-------TCTTACTTCTTGAGGATAAACCCCTTTCTTACCTTCTGGCAATTTCTCCAGTTCTCCAGTAAGTAG-----gttaaatg--------catttatttgtgAATTTGTCTTTGCTATGTGCCAGACTTCAGACATTTAATGGGAGAACCaaattgtaatag------gagactttGGAGAA-AGACAGGGTAAATCAAAGACttgcataaaaataataacatttc----taAACGGGTGCTTTCTGGCTGGAGTAGCAGGGACTTA-CTTCTTTCTGTTGATTTTTGCTCTTGTCAACAAGAACTCGATGTCTTGCCCTTGACAAAAGTTCATTTCAGTAGCCGCAGATGACGCTAACACTCACAGTTTTTCCAGTAGTCTCAGCATAAACCCCCAGTTCTCAC-ACTAGGGCCTTGCTCGGAGGA--CAGACTCAGCTCCATTTGCCTTCTACTCTAAGTTGCTAACATTTAG------TAGTAATTCCCTTTGCT----TTCCCAGCGTTGGGAGTGATAATCATTTCCTGTT-ATTCCTACCTGTATGATACCTCGGTGTCTCTATCTTTTCGGTTCTCAGTATTCACATGATATTGTCTA----TGTAATTACATCTCTGTTAAAATGACTGGGGTGAAGAAACTTGACAAGTCTATCT-------GATATAGCTGGTAAAACTCTT-GCATTAATCCCATGTACATATTTTCCTTCTAAAAGCCCACCTGTATCACTGGTAAGGGTTGGAAA

a score=96817
s chr3           147321222 2985 + 160039680 TTTAGTGTCTTTCCTTTAAGTAATGTCA-----GCTAGAGGAAGTCAGTACTGAAGTGACCTCAAATTGTTACATGTTTAGATTGGCCTGCAAGTAGAGTATGTCTATTTTCAGAATGAGAGGTCTGCTTTAATCATGTGAGA--TGTTC-TCTGTGGAAGGTACAGAGTCACGTTGCCAACACATATTACACCGTGGGTGG--CAATGCTTCCTCAGTACAGAACCCCTGTACCTGGATAACTAGATGGTGATTATCCATTAACCATTCGAGAGCACAAGTTGGCTAGGAGAC-ACTGCAATAACTTCTATGTCCCT-TTCACTCTA----CAAGTCTGGGGGGCAGAAACCAAGGAACA--CTCTAGAATA--ACAGATCTGTATTGGATCCTCATCCT-GTCTCTTTC---CAGTTCTGT--GGAGC--------------TGAAGGTCAGTTTCCACACCTAGCAACGTGTAAACAAAT----CAGCTTGACACAGCTG--TTGTGAGAATCCAGTTTCATA---GGTAAAGATTGTAGTCACTGCTCAGTTTACACATTGTGCCCAAAAAT-GTGTTTGCTTTTCCTCT-CTGCCTTTTATTA-TTCAGTTTGTTCTTTAGTTCTT-TATAA--GAGTTTTCATTAGATGGACGGTGTCCTTGTATTTGACGCTGACTTTTTAGCACCAAGGGGTCTATGAAACGTTGGCTAATAAATTGTGATATTTGACATTGAATTCTTGATGGCACTGCTAAAGTTTGCACAAATTATTTAGTGACTGATTTGAGATAAAAATAAATGAGTAACATTCTTTTTTACTTGATTAAAAATGTATGTTA-TCTTTCAAGTATAAATGGGATTTCAT--AGCTCCAAGATGAGAAGCCTGCAGAAAGCGCAGAGGATGCAT--CACCCGAGTAGGTGGGGAGT-GGGATTAAGCCAGAGTTGGTCCATTGTAACAGTTTTATATTACCCTCTTcccagggaagatttgtactggtggccttgaagtaaagagctctgtatcccattagcagccaatgagtcattcatcccccAACAGATCCAAATAAAATTTTACAGAATACCCTATGGCATGCTTTTCAAAATATATGAACACTCTACAATATCTATCATTTCTGTTAGCATATGAACTGACTCTGTCCCCTTTTT--TGTTTGGGACAGTGGCTCTTCCATTGGTTTTTTGGCTCCAAGGTTATCATCAGATCTACTTGGGTTCATTGagctttt-ccgttctaagtccccatggtatttccaggaggtttataacttggttgtaaaaattcactctaaactgaaacttggcaaacaatatattaatctgggaagttaatttcttttataaaGTCCAGAATCTGTTTAGCCCCTCTTTTGAGTTCCCAGAGACTTTGGAAAAATAAAGGGAGCAATTAAATTTTGTGTGTGTGTGTGTGTGTCTTAA--AAATGCAATTGAATTTCTTCAAAATCCCTTCAACCCTATTTTTACAGGTGAATAGCTTATTTTTTTGGACTGAGTTCTGATATATTTTGAAATA-TTTTTTTTTGGCACAGTGAAATAGAGTAATTAAAAAAGGAACTAGGCTGAG--------CTTACGTCACTAGAATAACAAAGTGTATTTATAGAGTGGAGACTGTCTGAATTTACAGAAAGGACTAAGATCCT---CTCATTGGATATTTACTAACTTACAAATAAATCAGGAAGAAGCAGCACTCCGACCCTGTG-ACGTGCCTCAG-------------TCTAAGTGCCGTTA-AACTTCTATCTGGAGTTGACTCACTAGACTTGGAGAGGGACTGTGCCATGAAGC---AGTGCCCACAAATGAAAATTAGATATGTCTGTCCTTTC--AGTGTCAGAGAATGCCATTTCCACCCTCGGCCTCCCACCAGGACCAAGCTTCAAGGAGGAGTTTTTTCA-ATAAGTTGGTAGACCAGATGTAATCTACTCTAACCCTACTTTCAACATAGAGACAGGCCCTAGAAAAAAGAAGGCCAGCAAAGATGAAGGAGAAATCAAAGTGGCATTTAAAATGGGACTCACAGCTTTCCCACACTTTCAAGTATATTTTACTATGGGAAGGCAGAGCAGAATTACCTcatggtatttgaagttggagagacctggtggtttctgactgtgtggccctggtgatcacactttacc----ctttgcaagttt-agtttgcttatttctccaagtagagacaataacattacatacctccttgagttctaatacagctcagaataa-------catg------tacataaaggagttaacagaggaactagcaagcagtaatt----aatacttggtTTTGTTCTTAGTTCTACCAAATATTCTGGTTATGTTTTAAAAACAGATTGTGATATCATTAATATC-ACCATTTTACAGATTAAACAAATAGGTTCACATGGGCCTTTGATTTGTGGAATATCACA--------AAG-------AACTTGTTCTCAAACTAAGCTTCCCTGAC----AAATTATGTTTCTCTTCAA-GGTTAACACAGTGATTATTTGAGAATGActttctttctttctttcttttttttttATAACTCAAAAA--GTTGGAAAGTAGGTATTTCATAAAGAATATAAAACTTTTCAATATTGAAAAA--CTTAGTTAGAAAATTTAATTCACAGGCATCAAAAT---------TGTTCAATACATAGTCTTTGGGGGAATCTCTGAAG--TTTTTTTATTGAAGTATATTAACTACGTAGCAAAATTGTATGTAATGGATTTGATGGATCTGTTATTGTC--TTAAGAGCACCAGAGTTTTCCCACTGGACTGGAATAGCTTAGAATGAAATACCCATAATACTTTAATAGCACATTGATTTCTAAGTCCGCATGGTTTGCTTGGTATCATAGGATTCGTTCCTGCATGAGAATGAT--AGGTAAC--------ATACATGCATATTCACAAATAGTCATATATGTATACGTTCATACAAATGAAAAGAAATATTTGAGTAGGTATTATTTTAGGAAG---AAGAGTCAAG-GTGCATTTTGCTTTCTACAGGAAGTTGTTCTGAATTCATTTGACATAAAGTAGAA
s HiC_scaffold_1 134004865 3011 + 233722169 TTCAGGGTCATtcttgaaagaaatttttttaatacCAGAGGGAGT--GT-CAAAAGTGATCTCTGTGTATCACGTATGCTAGTTTGGCAGTAAGTTGAGCATTTCTGTTAATAGAAAAGGAAGCGTG-TTGCATCATGCTAGGGTCGTGCGTTCATGTAAGATATGGAATCAAGTTGCTGAAGTACTTCAAATTTCTGGCGGGGAGATGTTTTGTAAGGGCAGAACATTTGTATTTGGAAAACTATGTAGTTGAGAGTCATTAGCAGCAGAATAGTGTTAGTGTACTGGAGGCCTATTgcatt---ttatatgtatgtatttagcATATGCTCAAACCTAGAGG-CTGAAACTGAAGAAGAAGCTTCAGAATCCTGCAGATCtgcatttgattctcagccttgTCTCTTTCTGGCAATTTTGTCTTGAGccaacttttcttcttttagcctcagtttcttcatctctcAATATATCCACACATGGAGTACTTTTACCTCACTGGATTGTGGAAATTAAGTGTTATATAAGCAGGAGTTCTTAGCTGATGCTTAATCCATGCAACGTGCCAAAAAATTGTGTTTCCTTTTCCTCTACAGCCTTTTAATACTTCagttcttactttattttttgtacagttAAGTTTTCACTTGATGGGCATTGTGCCTGT-------GCCGACTTTTAATCATTATGG------CTGAACACTTGCTAATGAGTTGTGATAGGTGACATTGGTTTCTTGATGGCTTTGTTAAAGTTTCAACACATTATTCATTGACTGATTTATAAATACAATGAATGAGAAGCATtactttttcctttattaaaattACATGTCAATTGTTCAATTATAAATGGGATTTTTTTTAGCTCCCAGAATGAAGTTCCGTGGGAGGCATGAAGAGTGTAGTGCACAGGGGCAGGCGGTGAGAAGGGATTAAACAAAAGTTGATCCACGGTAACAATTTTATATTGGTCTCTTCCCAGGAAAGATTTGTATTGGTGGCCCTAAAGTAGAGAGCTCTGTATTTCATTACCAGCCAATGAGTCATTCAGTCCCCTGCAGATCCAAATAAAGTTTTACAGAATACCCTATGGCATGCCTTTCAAAATATATGAACgttataaaatat--atcatttattttaccaTATGAACCACCTCTGTCCGCTTTTCACCATTTGGGATAGCGATCTCACCATGTGTTTTT-GGCTCTTAGGTTATCATCAGATATATTGGAGTTCACTGAGCTTTTTCCATTCTAAGTCCCTGTGGTATTTTCAGGAGTTTTATAACTAGGTTGTAAAAATTCACTCTAAACTGAAACTTGGCAAACAATATATTAATCTGGGaagttaatttcttttataaagtcCAGAATCTGTTTAGCCCTTCTTTTGAGTTCCCAGAGACCTTGGAAAAATAAAGTCAGCAATTAAA----------GTTTTTTTGTgtcttaaataaatgcaattcaATTTCTCTAAAATTTCTTCAAGCCTATTTTTACAGGTGAATAGCTTATTTTTTTGGACTGAgttcttatatattttgaaatagtttttttttggCACAATGAAATACAGTAATTAAAAAAGGAACTAGGCTGAGCTTACCCTCTTACATCACTGTAATAACAAAGTATATTTAGAGAGTGGAGCCTGTCTGAATTTAGGAAAAGAATCGAGATGTTAACATCATCGGATGTTCACTAACGTGA----AGGTCAGAGAGAATTGTCacttaaaatatgtgaaaattgatcagttttgaaaaaaattctagaTGATGCTAGAACTCCT---TGAAGTTGATTCGTTGGAAATTGGGAATGGCTTCAACATCATTCTATAAGGCCCACAAATTGAAATTAGAATTGCCCATCTTTTTCAAACACCAGAAAATAccatttcta-tgtcttctttttaCGAGGACAGGGGTCTAAGGGATAAATTTTCCACACAAGTCAATTGACTAGATGCACCCTGTTCTAACTGCCTTCTCATTACAGAGAAAGGCAC---------------------------AGGAGGAA-CAAAgttatctttaaa--------------------acattttcacatgTATTTTACTACGAAAGTGCAGAAGAGAATTAAATCATGATCATTGGAATTGGGTAAGTCTAATGGTTACTAGGTGTGTGGCCTTGGGGA------TTTACCTAGTCTTTATGAGTTTCACTTTGCTTGTTCTTCAAGGTAGAGACAATAACAGTACACGTTTCCTTGAATTCTAATATgacttaaaatgagaaaatgcatgtTGAATTACATTGAATTATGAACACAATTACTAGCAAGCAGTAATTGATCAATACTAgtttttattgttaatattatgcaattttgttg----gttttataaattaaatttcat---aataGTCTctaccattttatagatgaga-aaatagaCTCAAAATGGGTTTTAACTTGAACAAAGTCACACTTATAGTAAATATGCTCAACTTGGCTTCAAAACTAGGTTTCCTGACAACAAACTAATGCTTTGTTTCAGTTGTACCCACACCACTTATTTGAGGAAGACTACTTTGCT------------------------AAAAATGATTGATAAA----------ATAGAGAACACAAAGAT-----ATTTTGATAAATGCTTAGGta-caattttatttcacaaaCATCAATATTTTTCAGCATGTTCACCAAGTAGACTTTTAGGG--TCCCTGatgcttttttttattaaagagtaTTAACTGTGTACTAAAATGTCCTGTAATGGATCAAATGTATCTGTTATAGTCTGTTAATAATCCTTGGGTTTTCCCACTGGGCTAAAATGGTTTAGAGTGAAATAGCCATAACAGTTTAATAGCTTATTGATTGCTAAATCTATGGAATTCACTTGATACTGGAGGCCTAGTTCCTGGAC-ACAGTGATCAAGACAACttctttgtgtgtatatgtatgtgcttGTGAGCATATGTGAGTGtgggtatatgtgtgtgcatgtgtgtgtgattaAGTCTTACCTGAGAAGGCAAGAGATTCAGgagagatttttgttttcagtataaAGTTTATTTGaactgatttaaaacaaaacaaga

a score=39440
s chr3           147326070 1739 + 160039680 CCTCTATTGATATCTCAACTTAAATGCTCAAATGCTGACATCCATGCTAAACGTTTAGAACACTGACTTTTCTCTCTGAACTCTACCGTTAA--TTCTGTCTCTAGTATACGTCACTGTCATTTTATATTTAACCTGCTTGTCCTAACTGA--TTTTGTAGAAGGTAATGTAGATACACTTGTGAAAAAGGAATGGTAGAGCAACTTCTGAATTTAACTGTAGAAGGAGTTAGGAAGAGGCAAAGGTGTGGAGGGTACTGAGCTGGCTCTAGAGTATTTCAAGATTTATCTCCCTGACTTGAGGTCCTACAATAATGACTCCCTGCTATCCCAGCCTCTATACTGATATAGAACTCATTTCTTTTCCT--------CTGGGATTTAACCCAAGCCTCTTGAA-ATGAGGTAGATGAAAGATTTGACTCTTCCAGCCACT----CTTAAGTCTTGTGTTTTAGTAAGTTCAACGAATCCACTTTACTTTGCTACATTTGATCATAAAATACA--------------------------TTGTGTTACATTGCCTCACACCGAAATCACAACTGCCTAGAGGGGCTCTT-GAATAACTCAGTGTGTGTAACTCAGTGGAATCAATGACTATGCAAGGACTGGATTACCTGGCAATTACTTCTTCAGCTTTCACCCTGGAAGAGAGTCACCATTCATCAGTGTTTCTCAATTGATTAATCGGAAGGAGGCTACTGATGGCAGGGAGACTCCTTCGTCTGTCACTCTGGCAGGATAAATGTTGAGCACAAGAAAAGCCAAGAGTCCCCAGTGGACCAAACTTGAAAACT-GCTCAAGGTTATTTGTTATTTATTCATCTGTTCACTAAATACACATCACATATTGTGTCTTTGATGACAGTAGACTTTCTCTTTTGCA-------------------------TCAGGCACTCAAAGCTTGTGCTCCCTTCTCCTCTTTTGCATTTGAAACTTATTCTTACATTTTTTTCTTTTACCATCTTAAGTGTATTAGTAACTATGGTGGCAACCTTCATTTGGCAATCTTGCACTCAAACATAGATCCAAATCTTAAGTTAAATAAA------GTATGGCAGTCATCACATCAAGGAGAATTTATAGCATCTGAGTCATACTAATTTCCCCAGAATCatataatattataatttaattGTTCTCCACAGTAGGCTGCTCTTGGGCACTCATATCCAAGGATTC-AGCCAACTGGAAGTGAATTT-----ACATGAAGGCCATCACAAGAGACTAGTAAAGAATTCTCACTGAGCAGG-GGCTTCATAAAGTGAATAGTTCACATTGATATTGGTTAGATCAGACTTCAGTGCTCA---------------GCAAAAGGCTGCCTCTGGCCTTCTTCAAGTTATTCTTATTAACTTTAATTACTTATTTGTACAATGAGAACAATAAGAGCAATACTACTATTATGATGGTGTGCTTTTTGTACTGTGAAGGTTGCGGGATGTATGTCTATGCAAAGAACTTATGGAACCATATTGGTATTCCAAAGCTGATAAATAAATATTTGTGTGGATGATTAGAACAAAGGAAGATAGAGAAGGAGGTCAAATCAGGAGAAAAGGGAGTCAGATGAGGAAGAC-TGGAGATGAATGGTTTAGGGGAGAGCT--GTATGTTGCTAAAGCAAGGATAGTTGCTCTATGCACCACATTGTTGAGGCTGATTAGCACTGATGAGTGATTCTTCTAGTCTCTGGTGCTGACTAGTTCATTCTAATGAGGTTACACTGACCACACATCATCCTGG-TTGAAGGTTCTGTCCTTGTACAAGA
s HiC_scaffold_1 134012703 1760 + 233722169 CCTTACTGGACATTGCAGTATGAATTATCCAA--CAGAAATTTATATTAAACACGTATAGAACTGATTTTCTTCTCTGAACTTTTCCCTATAGCTTCTGCTCTTCCTTAATTGCCTTATCACTTTGTGGTTATCTTGTTTGTTCTCATCAAAATCACATGGAAGGGAACACAGACATTTTTGTGTAGGAT--CTGGAAGAGCAGCTTCTGAATTCCAGTGCAGAAACAGTTAAGAGAAGGCAA---TATGGGTGTTCCTAGTTGGGTTCTGGTGCATTCCCAAACTTGTGGCTCTATTCTG-GGCCCCACAGCCATAAACCATCGTCTTCACA-----TATGTCAATATAGATTATATGTCCGTTCCTTCTGATATCTGGATTTGATCCTTATCCCTTTGAGGATATGACGAGTGATGGACTTGATCCAGGCAGCCGCTGTGTCTTCAAGCCTCTGTTTTAATAAGTTAAATGAATTAGCTTTGCTGTGGCATATTTAATCACAAAACCTAAGAAGAAATGCTGGAGGAAAAACGTGTTGGACTTCATTGAATCTCAAACTACTCACAAACCATTTGATGATTTCTTTGAACAACAC--TATGTTCAACTCAGCGGAATCAAAGACAATTCAAATAGTGGATCACCTGGCAATTACCTCTTTACCTTTTATCCTGGAAGAGAGTCACCGTTCATCAGTGTTTCCCAATTGATTAAGTTGAAGGGAAGCACTGATGGCAGGCAGACTTCTTTGCCTGTCACTCTGCCAGAAAGCATATTGAACACAAGGAAG--CCAGAGTCCCCAGCGGGCTACACTTGAGAAGTGGCTcaaggttatttttta--aattcatttattcactaaACATGCATCAAATATTGTGTCTTTGGTGACACTTGTCTTCCCATTTTGCATCTTTTCTCTCACATACCTGTTTTCTCAAGTACTCACTGCT----CTAACATTTCC-CTTCAACAATGAAAAACTatactcagatttttaaa---agccatCCTAACTTTATAAATAA----GGTGAT-ACCTTACTCAGGTAATCATGCGATTAAATACTAGTCCAATTTTAAGTCTAAAAGAATGAACTATGTGTCATTCTCTGAGCCCAGAAGAATTTAGGGCACCTGGATCATCCTGCTGTCCCTGAAATCA--------CATTATCTAATTGATGCATACAGTGTGTAAAACTGGGCTCCTGATGTCCAAAGATGCAAGCAAACCAGAAGTGGGTTGCTGTAGAATGAAGGATGCTAGAAGAAACCAGCAAAGGAATCTCATGGTGTAGGTGGCTGCCTAATGTATGGTATGCGATTTGGGGTTGGACAGAGCAAACTTTGATACTCAGTTGCAAAACCATTTGTAAAAGCCTG-CTATGATTTTCATTAGCCTGTAGGC-TAAGTCTTAATTGTTTATTCATACAAGCATGATAATAATAGTA----CACTTTCAGA-----------TTTGT--TGTGTAAGTTATATG--GCACAACTATACAAAATTCTTTGGGGGCAATAAAGATATTGCATAATTG----TTAAATGTTTGT---AATGATGAgataaagggaaggaaaagaagaaagtggaTACAGG-----GGGGAGAAAAAAGAGGGATGCATATACTTGACTGATCTTTAAGAGATTTAAATTTGTTACTGAAGCAAGATTGATTGACGTGTCCACCTC-TCACTTTCACTGCTCAGGACTGAGCAGTCCTTCTCATCATCTCCTTCTCTGAC--GTGAATTCTGGTGTGATTATGCTGACCA-----TGTCCTGGATTCAAGGTTCTGTTCTTGCCCATGA

a score=239368
s chr3           147333954 11404 + 160039680 [encoded data, 12488 characters]
s HiC_scaffold_1 134033191 11274 + 233722169 [encoded data, 12488 characters]

a score=104497
s chr3           147346311 3175 + 160039680 attattaaaagcttaaaagcttgaaaactattagtatatgtagattatagcacttgatattta----attgtaaattaaattatagata---aa---ataccaaattatttaaaaatcatcatgggtcgatataaacatcttttgttggaaaacaatcatttcaccagaaaaccagtgagttgatcagttttctatttatactatatcccttgaatca-tggacttcacagaaaacgtggattctcatgcctgtctctgtattcaacttagtgtgttttggCCAACAAGACAAAGCAGACAAGGACTCATGTTCTTCTTTTGATAGGCTTCCCTGGTAGCTGTAGGCTTGTCA-ATAGCCTAtccttagagaatgatggtaaaaagtg--aataatatttttataccctcatggaaattacattggcttcatgaacatacagaaagagggttgggagtctcagtgcctgctggaccacatggcgagaaccacGGTACATATTTTATGTCCAATGGCATCTGAGTTTTGTTTTGTGTGAAATATTGCTATGATAACAGAAAAAGGTAATGACAGCTATGGCAGGGAGCTGGTGAAAAGCTGGAATTATTTTTCTTTTCTTTAAAAAGAATAGGAGCTAGGTTATTAGATTGAGTCTTAGGGGG-GTCCCAGATGTGAAATTTTCTCACTGGCAGTCTCT-TGAATGTGAATCGGAGGTGCAGTGAATCAGATGGTAGCTGCCCTTCAAAGAGTGTCCACAGTGAACAGCGCTTTCTCGTGATTCGTAATAGAGTTTGAAAGTTGTTATTTGTCCCTTTCTTTCTGCTGTGAATTATTTGGGGTGTGATAGATGGTAATGTGTTAAAATGCATTAATTTTAATGTGTTTCTTTATTTTTCATGTCATAAAA-TTAGAGATGGAAGAGCCTTTGTGAGTCACGCAGTCCATCACCCTGGCATAACATCATGGCTCTTTCCAGAAAGGCTTTGTCTGGCTTACTTTTAAATGAGGAAGGCAATTACACTCCCATTAGTTCCCTTGGGAGACTATTCCATTTACTGATAGATCTCCATTTTGAAATGTTGCCCAACATGGAGGCCATGTTAGCTGAATGCTATTAATCCTTCCTTGGATAAGTCCCATGTGGTGCTCTC--AGAGGGAGGCTTGTCCACATTACTCCTCTGGT-------------------GAGGGTTCTAGCATGCA----------ACCTGCTGTGGGCCTGGAG-------------CTGCCTTGTAAACTCTCTCGTGCTGCATCATCTGATGAAGAATTTATTATGACATTATTGTCAGATTCCAAGCAACGACATTTATTAAGAGGGCACCGGGGATTACCACATGTAGAAAATAGGTGAAAGGGTGATCTCATCTGGTCTGAATTGCTTTCACGCACTAAGAAGAATGAAGTGTGACTGAGCTTTTCAACATCTTACCCAAACAATGGTCACCACTGAGCTTTGAGATTGAAGCTAGGAGAATGGCTGTCATATGAATAAGTGAATAAACATGTCAG--GTGTTTGTGGTAATGAACATGAAAAGATTTCATAAACTTTTAAAAACAGAGAACTCACATTCTTCTTTCTGCACTACAGAAATCAAGTTGTAAATCTCTAGAGGGCCTGCTTTAAAAACAGGATAATTTTTTTTTATGCCTTGAGGATATTCATGTGGCTTTATGTAAACATTACTTTCTGAAAGCAT--AGTTTGAATTCCCAGTTTCTTCATGCTCAGCCGATTGGCTGATGGCTGGAGAGACGACATTCAGTTTTCCCCTTTCTCTTGCATTT-AAAAATTTACTTCCACTTACCCTTATAAATCTAGATTATTTTGTCTTCACTTTGAAAGCAATTTCAACAAATCTCATGATGTAGTCCAGTAAACATTCATGTGTAAAATGATCTCTAAGTTATTTTTAAGAGGCAGATTT-TCCCCTTAATGACATAACTTCATGACTTGGTCACTTGCAGAGGAAGA--------------AGGAATGG-------CTTAGTTTGTTATTGCAGTGCTAAGCAAACTCTGGTAGA--GTAGGCGTGCTTGTCAGT-------TCTTATTTTTGTCCTTTCTTCTGTTTCCCTCCTTCATGGTTTCTGTTGTCTTTTTACTTCTTTATTTTCTG-ATTGTTCTTTGAAGGAGACTG---ACAT---TCAATGAAGGGATGATGAAAAACAAGAGTTTATCAGTTCCCTCTCCTTCCTCCCAGACAAAATGAGGCAAAGCTAGTGTTCTGCATCGTATACTAGAAAGCAC-CCATTTCTTGGGATC-ACATTCAAGGCCAA-ACAACAACAAAAACAGAAATAAGAAGGAACAAGCCAAGAGCTGTCTGTCAGTGGCTCATAT---AAGGAATCTGGCTTGGTTGGTTTGGAAAGGCAAGCATCCCATTGCCCCTTTACAAATAGTGCTTCACCACCTCTAGGAGGTATTTCACTCAAACTCGTGGTGAAGCCAATGTTGATACTCAAACTCTGTCATGAAAGAACAAATAGTTATGAACTTT-----GGCAGAAAATTAGAGAAAGATGCTAACCTTACTAAGCTCATA----------------TTCATTGTTTTGTTCAGGTTAGTGAAGCCCATGACTCTACTAGAGTAGCAGCGGTTTGACTCTTGGTTTGTACAGC----CCTCTGAACATCAACATAGACTA-TGGTTATCCTTT--------------ACTGCTGGCTGTGGGTCCCACATCCTTAGTCAGCTAAGGAGTTTCTTTTGTCCTGTTTGCTGTGGCTACTAAATATAGCA--------TTAGTACCCATCTCTGTAG---GATGCAGAGATGA--------------GACAAAAATGACTTCAGACAGCATTTGGCACAAAAAGGGGGCTTAGGAAGTGTTG----------CTATCACACTTATCATGTCTGGAGGAAATTTATGTCTTCTAGCTG---------TGTTTTCCCATCAATTATATCATCAAGTA--CTATTCAAATAACTTATTAGCATCCCATGACCTTTATATTCCTGGAAATGCGGCTTTT-AGAAAAAAATGAAAAATCCTACTGTG-----TCTATGATTCTCAAGTGCTGTCT-------TGGGGTTCCTGGCAGGATTAAGAAGCAGATATGTCAACTGTTAAATACTACATCCATCCCCCCAAAAACCCGAAAACCCAACAACAACCCAAAACGGTAGGTTGGATGGTTATCATACGTTTTG--TTTTTTAACTGGTAGGATTATTCCTGTGattatataaatattttaaataCATCTCATATTTTAAATGTTGTATTTTGGCTCTACATTCT
s HiC_scaffold_1 134047173 3237 + 233722169 ATcattgaaaatgtgaaa-----aaaaaaatt-gcccatGTAGGTTATGGCTATTGATGTTTgctatattagaaattaaaatgcaaacatttaatctctactaatttatttttaaaagttcatatgttaaca-aaataactttaat--aaaaataattatactttcCAATGAAAAGTAAGCC--------TTGCATCTTTGCAA-ATCCCCTTAATGACTGGA--------AAAAGTTGAATTTTCATATCTCCTTCCAAGTTCCATTTAG---------GCC-------TCAAACAGA------------TTTCTATTTTAACTGGTTTTTGTGAAAATTGTTGGTGTATTGTGTAGACCATCCTTAGAGAATGAGagtgaaaaatgcaaataatattttcctatctttataaaaatagttttgactTTATGGCCACACTGAAAGATTCTTAGAAGTCTCAAGAGTATTTGGACCACACTTAGAGAACTGCTGAACATATTTTATGGGCAGTGGCATCTGAGTTTTGTTTTATGTGAAATGTTGCTATGATAACA-AACATTGAAATGACAAGAGTGGC-GAGAGCTTATGAAaacctgaaattctttttcttttcttccagaagAATACCAGCCATGTTATTAGA----GTCTTGGGGGGCATACCCACAGCGAGGTTTGTTCTCTGGCAGTTTCCCTGACTGTCAATCAAAGGCCCTGTGAATTAGGTGGTGGCTGCTCTTAAAAGAGTATTTCCGATGAATAGTGATTTCTTATCATTAGTAAtagattttggaaatttttatttgtcCCTTTCTTTCAGCTATGAATTATTTTGGGT-TGATAGATGGATGTGTGCTAAAATGCAttaattttaatgtgtttctttatttttcatgtcataAAAGTTAGAGATGGAAGAGCCCTCATGAGTCATGCAGTTCATCACCCTGGCGTAATATCATGGCTCTTCCCAGAAAGGCTTTGTCTGGCTCAGTTTTAAATGAGGAAAGCAATTATACTCCCATTAGTT-CCTTGAGAGACTATTCCATATACTGATAGATCTCCATACTGAAATGTTGCACAACATCGAGCCCATGTTGGCTGAGCACAATTAATCCTTCACGGGCTAA-TTCCATATGGTGATCTCCAAGCGAGAAAGTCACCCATGTTGCTCCTCTGGTAAATACTCTTCTTTCTTGAAAGTGTTTTGTGGTGCATGAGCTGTTCAGCTGCACTAGTTGTTGAGCATATTCTGCTCACTGACATATAAattctctgctgttgcatcatCTGATAAAGAATTTATTAT---ATAACTG--AGATTTTAAGcaacaatatttattaaaagggCTTTGGGGATTATCACATATAGAAAATAGGTGAAATGGTGATCTCATCTGGTATAAATGGTTTTTACACACCACAAAGAATGAGGTGTGGCTGAGTTATTCAATGTGTTACTCAAACAATAATGACAAGTGGATTTTTAAAGTCATCCTAGGAAAATAACTGTCATATGAAGA----AATAGACATCtcaggtgtgtgtgtgacaacgaagatgaaataattttataaacatttaagaCCCT-GAGTCCATATTTCTGTTTCCATGTCACA-AAATTAAGATGTAAATCTCCAG-GGGCACgc-ttaaaaaaaggataaattatttttatgcctTTGGGATATTCCTATGGC-TTATTTAAACATTATCTTGTGAAAGCATGAAGTTTGACTTCTCAGTGTTTTCATACTTAGCTGACTGGGCGATGGCTTGAGAGACAGTat---gcttccctctttcttttgtatttaaaaaatttactttcatTTAGTCTTATGAATCTAgattattttgtcttcattttgaaaGCAATTTTAACAAATCTCTTGATGCAGTCCAGTAAACATTTTCATGTAAAAAGATctctgag-tatttttaaaaagcagatttctTGCTTTAATGATGCAACTTCATGACTTGTTCAAGTTAAGAAGAGGAAAAACCAGCAAACCAGAAATGGAATTATACTAATTTTATTATTCTAGGGCTTAGC--ACTTGGACACAATGTaggtgtttttattaatacagaGGACTTCTTTTTGTACCCT------TTTTTCTCATCCCTGGcttcagttgtttttcttttggtttgttttttgtttttttctttaagggaGAATGTTTGCATGAGTCAGTGAAGCAATACTGAAAAACATTATTCCCTaagttcctttccctttttcccaGACAAAACACAGTAAAGAAACTGCTCCATGTGATGTTTTGAAAACAACTCCAGTTGTTAAGatctacatcaaaagaaaatataaaaatagaaacaaatacaa--------aagctAAAGGC---CCTTCAGTGGCTGCTATAAAAAGGATTTTTCTCTGTTTAGTCTGAAAAGACAAATAACCAATTATTCTTTCATAAACAGTGCTTTATCATCTGTAGGTGTTGTTTCACAAAAATTTATGGCAAAGCCAATGTCAATGCCAA--------CatccaaatataaatatttgtgttctttttccaGGAAGTTAGTCAGACATAGATGTTATGATTACTAAAATATTAGATGAATATTTGGGTTCTCATTGCTTTTCTAGAATCTACAAAGCCCTTCCCTCCTTTGAATGACCAGC-TTTTGACTCTCACTTTGTATAACTGTTTCCGTAAATTTCAGAATAGACTACTGGTTATCCTATCCTGGAGCTATACCACTGTTTCCTA-----CCCAGATTTCACACTAACTAGTAAGATGCTTCAACTCTGTGGCTTGGGAATACtacatgtaaaatgggaatgTCAGTAGCAATCTTCACAGGTTGGTGTGAAGATGATTACGTGTGTTATTATCCATGAACAATTAGAATAGTTCTTGGCATGGAGCAAATACTTCACACATGTTGATTCTTTTatctatca---ttatttttattgaagGCAATATATATCCACAACCTGCATCATTGATGCTTTTCCATAAGTCTTATCATCAACAAGCATATTCAAATAACTTGTAAACATTCTGCAGCCTTTATATTACTGAAAATATggctttcaagaaaaaaat---------tagtgtgGACTAGCTACTATCCTAAAGTAGTAGTTTGTTAAATGGGGTTTCTAATTGACTTATAATTCATGTACTTGAACAAATGAAGAC-----CCTTTTCACCAAAACATCTCGAGTCT-------TTCCAAGATGGATCATTCAACTTTCATCACAGAATTCAATTTTTCTCATTGTTAGAATTATTCCCACAATTATATGAG-GCTTTAAaaatttctcatctgtaaaagat----------CTCCACATTCT

a score=109979
s chr3           147351026 5247 + 160039680 [encoded data, 5662 characters]
s HiC_scaffold_1 134052187 5206 + 233722169 [encoded data, 5662 characters]

a score=46925
s chr3           147368254 3079 + 160039680 CTATGCTTTACCTCCATTAACTT----ATGGCTATATTTCTCTGTTAAACACCATGCTAACTAGTAAGCACCAGCTGAAGAGACATGGCTACTTTGAATAT------GTAATATACATGTTTGAGCTATGAATAAAATGTC-AACAGATAAAATCGATATAACCCTTTCACATTTGACTTTGGATATCCCACA-TCAGCAAAAGACTTAAAGAGTAATGCCCATTTGCTGAGTGGTAGTGTGAATAAATATTATTACCACTGCCTTTTTATAAGGGTAGGTATTCATTTTGTAGGGCTTAAAGGATATAAAATTTATGACATTTCATCTACAAAATACAATGTGAAGTCATAAACATAAAACTAGCTATAGGTCTTGGCAGGTACCTATGTAAACAAGGGTTGCTGACAT-------TTATTAGATTTCTCAA-AGCCCATCTCTGTTTCTTCACTATGGTTTTCTTTTAACCTTCTTGCTCTGCATTCTTCCTTCCTCTGTTCCCATACTCTATCACTGATTGTAGGATGTACACCTTATCCTGCAAATAAAACTCCATTGC-TTGATTTCCCACTGTCTCTGCCACACTGTGCTAATGATCATGTATGAAATGACTATGTGACCTATGTTCTTATCATATATTTATCACATACTCATGAAATGCTGGACACTCAGAACTTCAGGCAGCCTACACTTAAGTCTGATGTCATAGTCTACAGTTCTCAAGTTGTCTGCTGTGGCAGAGTAAAGAAGAATTCTTCAGAGTATAGAGTTATTGCAAGAGGCTAACTTAAAATAGTCTTAGGAAAAGTAGCTGGATTGAGATTAGGAGGTGTTGTATAAAAGAGTGGGTCTCAAAGCTTAAGGCAGATGAATAAACACATGTGGGTGAGAGGAATACATTGACAAGCCTGGAGTTGATATCAAAACAGGCTTTGTACGTGTAAAGATGCCCTATAGG----ATGCACTGTTGAGAACCCAGG-ACACAGGGTGAAGGCAGAACACACAGTGACTAG---GGTGTGGCTCGCAGAAAGAACTTCATAGGGCAATGTGCCAGGTCTTAAACTGTTCTTTATAATTCACCTTGAAATCTTAATTTGGCATCAAAATCTCTTTCCAGAGGTTTTTTTCATCAATCTTTTTTTTTCTCATGTCAAGACAAACTGAGGTTATTAATCTTTCCcagacactgtgatgtttgacacatattgtattactaggataaatggaattattaatagaaattccagggaacctgaaggctcctgggaagcatatttaaaaagaaggagacaggattattttattttctggaaaGGCATTTAACAAAGGAAAAGATTGTGCCAGTCTCGGAGCCTAGGCTGGATCTGGGCAGCACTAGGTGTATTTGTTGTATGCTGGCCTATAAGTAAAGCTTGTTTGTTGCAGATTCAGATCGGATCTTATATATCCAAAGGGACCTTCATATGCTTATGTTACTTTTTTGGTTAGGGAGCATAAAGgttttaactgttagcttgacacaatttagaattagttggaaagtgtgtctcaatgtgggatggcctgtgggcatatgtttaatgagggagagttgccttgagtatgttaatggagatagaatgtctgtccacctgtgggcgccatcatttcttaagtggggatcctgaattacatgagaaagtcagttgaacatgaacaggaatgcatctatttccttcctcatctgacactggacaccatgtgactggtctttcaagctcctgccactgtgactgctctgctgtcgtggacagtgggctgacattgaggataaaattaaatgtttcctctcttagattgatttggtcagaatattctattacaataaaatgaaataattcagacaTGGTAGGATTTCTTATATTCTTACAGTTTACTTTTATTATCATTGTTTTCTTCTTTAAAAGATAGTTTTCTTTTAGAAAAAGTGCCTTGTACTGGGAAAGCTAAAAAATATATATATAGATAGATTATACTCTCTGCTCTTGAAACTTTTAATTAGTTG------GGGGGGGGGGGGACTC----------AGAGGTCAAGCATGGAGACCTG---TACCACGCCAGAGGTAAGGCTT-----GTATGCAGAAGCATCAGGGAAGACTTCCTAAACACTGGCAATATAAAAGGAGAAGGGATTGTTAGGAAGATGAAATTAGCAGAATTTAAGTAAAGAAGAGTGAGG-----GGATGGTGAACCTAAGGGTTCTGAAGAAGTTTAGCTCTTTGAATAGACAGGAGAGAGGGGTTTGGGAGCTGGAATTGCAGCGCCCAAAACCATCCATCTTGTGATGCCTTAGCAGGTTTCCTAAGAGGTCACCACATGGTCATGCTCTGGAACCTTAGTGTCTGGCACACCTCAGTCACAAAAGTACCATAGTATCAGGAGGCAC----------------AGTGCCTACTTCTTAACTAAAGTTGAGAAATCACATGTGAAGGAGAGGATTTATGCATCTTTGATGTTTCCCTGGAGCTACAGACAGATCCATTCTTGTT---------TTATTCTCTTC-TTGTGCTCTCTCTCCCTCTGTTTCTTGGTCTT---CTCTTCCTCTTACATCTCTCCCTCACACAT---CAGACACCTATGGTCATAGCTAAAGAGCACATGTTCAGACTCTTCCTTTAAAA---TATTTTATTCATTGTGGGAGGTTCAATTTAATGTGCCTTACTG-ATTTTCTTCACAGACCTTGTACT-TTCAATTAATTAGTTTTGACTGAGTCTTATGTACCTCAGTTATATCCCCCACTTTCCCACAGAGTCCTTTCTGATTGACAAATTGCCTACTTTTTTTGGGTATATATAAGTGCATTCAAGAGGTTCCACACCAGTCAGTTCATGCTCTCATAATGAGCTCTCAGTATGTGGGCTGGAAATGTTTTTGAACAGAAAAGCCTACATTATAACTTTTAGCAAGTTGAACCCACCCATGAAATATTTGACTTTCCTGAAAAAA-AATCTACTCTTTGATTCTTCTCAAGGAAAGCACAAATGGTGGTGCAGATAACCTCCCAGTCCCTCTGCAGTGGCTCCTCTTCCTGAAGCTGCCACTCCAGAT-------GCAAGGAAAGAAGAATGCTCTGAGAATga
s HiC_scaffold_1 134060497 2648 + 233722169 CTGTGCTATGGGTCCAGTAGCTTCTCAGTTGTTACAAAGACCTGTTTACCGACTTGC--ACTGACAATCAGTTGCTGAGTGga---gaatatttttcacattttaaaataataaacaaatatgaTGTATGAATAAAAGGACTAATAAATAATGTGCTTATTAGC-TTTCTTATT-GTCTTTGGATTGCCAATAACCAGTTGAGGACCCActgctaaataaatgtttgctaagCAACAGTACAAACTATTGTTTTTCAGAGACCTACTCCATA---------------TTTGTGAGGCTTCAAAGACATGCGTTTCATagaatctt---taagaaaaaaaatatgcagttATAAATGTAGAATTAGATACAAGCCTTCACAGG-ACCTATGTAAATGAGAATC-TTGAGATAGAAACTTCATTAGCTTTCCTAAGAATCTACCTctgct-ctttaaaat-------ttttggtcTTGCTTCACTCCATT--TCCTTCACTTGTTCTTATatttaaatactgttttatttttatgtccctTATCTTAAACATAAAATCCCATGCCAGTGATTGTGTCCTCCCTCTGGCCCTGTGTGATAGCAGCCATTTAAGAAGTTGCTACATAATTAACatatttatcacatatttattgaatgtcCCCAATATGCCAGGAACT--GGACTCAGAGCTGTGGACACTGTAGT--GACACCACACATCACATTTCACAAACTGCCTGATCTGACTGAGAGAAACAGAATTCC-CAGACCAGAGGGTCTCAGGCAGTGACTAATGTGACATAGCCTGAGCAAAGCTCACTGGATCAGAATTAAAAGGGGTCCTGTAAGAAGGTATGTCTCAAATCC-AAGACAGGAGAATTCACATATATGGTGAATAGTAGAATATTGGAAAGGC---AGCTGAAAGAAATATAGATCTTGTACATATGATGA------ATGAGTTCAGTGTCCCATGCAGAATCCAGGTACCAAGGGTTC---CAGAACACTGTGGATCTAGCTGGGTGTGGCACCAAAAAGGAACTTCAGAGGGATGTGTGCCAGCTCTTAAATTGCTCCTAATAATTCACCTTGAAATCTTAATTTGGCATCAAAAG-TCTTTCCAGAGGTTTTTttcatcaatctttttttttctcatgtcaAGACAAACTTGAGTTATTAATCTCTCATAGA-ACTGTGATGTTTGACACATATTGTATTACTAGGATAAATggaattattaatagaaattccAGGGAAACTAAAGGCTTCTGGGAGACATATTTAAAATGAAGGAGACAGGattattatattttctgaaaaat------ataaagttaCAGGGAGCACAAGCCACATAACTCTGGCTGTATC----CAATAC----------TGTGCTTTGCATACACACAATTAATATAAGCTTGCTGAAGAATTGTGTGGACTTTTACGTATCC-AAGGAATTTTCATCTTTCTATCATTCTTTTTTGA----------------------------------------------------GGAAAGGAAGT-------TGGTATTACTTAT-----------------------TCTGCTTGaagtttgtt---------------------------------------ttttcta----------------------------tca-----------------------ctGATTTATTCTCCA---AACACtggatattat-ttatttttctcccaaaa----------------GTTATGCTA----------------GGTATTGAAGA-------------TTC--------------------------------------TAAAATGAA------CAG-----------------------------------------ATCATAATCTCTGCCTTT---------------------AAAAGTTCCTGG--CTGGGTAGAACAAAAGATCATTAAACAGAAGAATGTTAC--------------ACTTCTGGTGAATTGGACCATGGAGAAGGAAGGGCCCACTGGCCTAGAGGGGCCAGGAAAGAATCCCAAGGTTGACATTTTAGAGTTACGTCCTGAGTGGGATGGGGAACTGTGTAGGAAGAC--------------------AGACAGTGAAGGGA--------AGGAAGTAATTAGC-----TTATGTGAAG--GGGTTATGACACCGGGTGGGACAGCTAAAACTTTTCACGAAATTCAGGTATTTGGAAGGATAAGACTTAGTAGTC-----ACTAAGGTTACATAGCCAGGTACCA------------------------TTTCCTAGCA-------------TTATGTACTGAAGTCTCAGTGTCTGGAAAATCACAAATAGTCAAATTCTACTTTATCAGGAGGAACAAATGAGAAGATGGATAGTACAAGATTCTTATTTGAAGTTGACCAACAATGGGTAAGAGAGGGGGTTTA---GTCGTTG-------TCTTTAGCTGTAAGCagatctattctttttttaaaaaaattattcttttagttATGCTGCCTC--------ATTCTTactcttatgttgtttctcttaca---cacacaaacacatacacacatatttgtTTTCATAACTACATATTACTTG-CCAAATTTTTCCTTTACAAACTCCTTTAGCAAATTACTAGAGGTTTGGCTGGACAAGTGTTGCTATGTTTTCTCTGAGGTTTTTGGACTATTCTCTTAATCAGTTTTGATCGGATATTTTGTACCTAGGCTTTGT-CCCTGGTCATCCACTGTGT-TGTTCTGATTGACAAATTGCTTGTATTTCTTAG----ATATAAGCACACTCAGGAACTTCAAGCCTAGTTAGTTC--GCTCTTATAATGAGCTCTTGGTACTTGTGCTGGAAATA--TTTGAACAGAAACTCCCAAATTATAACTTTTAGCAAGTTTAAAACACCCGTGAAATATCTCACTATCTTTCAACAATCATCTGTTCTTTGATTTCTCTCAACTGAAGCTGAAGTACTGA-GAAGATAACAT---AATCTCTCCTCTTTGGTTTCCTATCCTTAGAACAATTTCCTAGCTGGCcaaagtaagaaaagaagaaatatctaTAAATGA

a score=41577
s chr3           147376031 1582 + 160039680 TGTGGAGCTTGAAATTTAAAAGTCCTCTTTCTTCTTCCCAA---ATCATAAATTCATTCTTCATCTCTTAAAG-ACACATTAGGCCTCAAAATAAAATACCTAAAACTTTGGAATATCGCTGCAT-TCTAATGCTATTTTACCCTTGTGAAGACCATCTGAGATGATGCCTATGGGATGATCTTCGCAGCTGCTTTAGCTACACAGGAAAGTATA--------------------------------------------------------------------------------TGAATCACATCACTAACAAGAGTATTTTCTTAACAGCATGGATGAAG-AGGATGGGGGAGGAAAATGGCACTGAAAAAAGGAACCTGATTGCTTCTGTTTGAAATAACTATCTGATTAAAACAACTTCAACAATAACAGCACCAGCAAAGAGGAAAATATTCTCTGCCACATAA-----AAAAAAAAACAACCCACCAACAATTTTCACTTTGGATGGACCATTTCCTTTGAAATGAAAAGAAAAAACGAAGCAGTTACACCATGGGTGTCCCTAGTATAAGATGCATCCAACCTATAACTTCTGATTACTGGGAAATTCACATAAAGTAAATTCAGATAGGATTAAGGAAGCCCCCAGGGACTAACAAGTGGGAGAATATTTATCTG-TTGTACCAAATAGTTGACTGAATAATGAATAACTATTAGCGTAAATTGCAAGAAACACAAGTTATTTAACTGTAATCCAACAATTTACATTTTCTTTCTTCTTCCCCCCCTCCCCAAATCAGTGTCTGAATGAGCATGGTAGATAGACTCTCACCATGAAGATGGCAATGATAGCTCTCACTGAGTAGCAATATTATTTTCTAGGAGATTTCTGTACTTTTGTCCTCCAAGGCAGGACTTGTTAGACTACAGGA--------------AAAGCCTTTGAGAGCCATTGCCACTCAGGACAAATTAAAGGCATGCTTTATCTGGGGTTGTCTTTACCTCTTATTATCACACACACACACACTCAATCAGCTCCTTTGggtt----ccagaacc-cctacagagcccagatat----ggtgctcaggcaccttacatacaatgacatagtattatgctattaacataaaaccacacacatcctccaatttactttagactctctctctag---ttataatacctgatacaatatgaacaatgcacagatgtttgctttattatgttgtttaggaagtaataacacagat------------------------------------aacagtttCACTCTTCCAGCCCACCTTGCTGTAACCTATGTATGTTTGACATATGATGCAGAGGGCTAATTACAAAGTAATTTGTACACCAGATGCTGAGTCAGACACATATCTCCAAATACTGGATTCTCTGTGTTGGAGTTTCACTCTCTAATCACTGGT--TAAT-ACTGTCCT-TCAACCATGCCCCTTAATATTG-------------------CTATTAAGGCATATCTGCTTAT--GTCAAAGGACA-AGCTTAAATTTTTCTCATTTATT-TTTATATAGACTCTCTCATTGGAAAATAAATTTGTAGACAGAAAACCATGTTCAAC-TCTAAAGAGTAATGTCTCCTTGCAA------GAAGGAATAT-GACAGGAACCTTCTGAATTTGCCATACAACAAAGAATAAAGCAAGG--------TCAGGAGAAAAATTTGTGGAAAGATGGGGTATATAGGAGA
s HiC_scaffold_1 134063803 1689 + 233722169 TGTGGAGTTTGGAACTAAATATTCCT-TGTCTTCATCCCTGGTGATTCTAAATGTGTCCTCCTTTCTTCAAAATACACATGAAAGCTCA---CAAAATACCTTGTACCCAGAGACACTGCTGTAtctttaatgatattttaactttataGAGACCATTCTA-----TTTCTTTATGATGCTCTTACCAGCTACTccagcttcacacacacacacacacacacacacacacacacacgcacacaccacacacgcacacacacacacacacacacacacacacacacacacacaccatgaatCACATTACTAACAAGGGTATTTTCTTAACAGCATGGATTGAGTAACAGGGTGGAGGGATatt-caatgaaaaa-gaaactcGATTGCTTCTGTTCGAAATAACAATCTGATTAAAACAAGAGCAACAATAACAACatcatcaaagacaaaaatatactctACCACCAACCCCCCAAAAAGTCACA------CAACAATTTTCACTTTGTATGGACCATTTCcttggaaatgaaaagaaaaaatgaagcagtTACACCATGGGTGTCCCTAGTACAAGATGTATCCAAACTATAACTTCTGATTACTCAGAAATTCACAGAAAGTAAATCCAGAAAGGATTAAGAAAGCCCCCAGGGACTAACAAGTGGAAGAATGTTTATCTGTTTGTACCAAATAGTTGACTGAATAATGAATAACTATTAACTTAAATTGCAATAAACAC-AGTTATTTAACTGGAATTGAacagtttgcatttttcttttcttttctctttaccc--AACCAGTGTCTGAACT-GCATCTTC-AGAGTATCTTGTAATGAGGATGACTATTCTGTCTCTTACTGAGTTGTAGCATTGTTTTCAACAATTTTCTGATCCTTTCATTTAATAAGAGAACACTTGTTAGAATATAGGATTAGACACTCATATAAATACTTT-----CCTTTG---TTTGTAAAAGAGTAAAAGGGTGCTTTATCTAGAAATA-----atcttttattgtaaaatatggTCATCCCTCATGA---TTTTTAGATTTCCCCCAGTACCACCTGTAAAAACCACATTCTGCAGATGCTT--Gtctgttatttaaaataaga-aataatttgcaTGTAGC------CTATGCACTTATTCCCTTATACTTCAGATGATCTTTAAATCTCTTATAATAGTTAAGAACATGTATATGCTATATAAATAATTGTTATAATGTGTTATTTGGGGAATAGTGACAAAAGTGTGTACATATTCAGTACACATACACAATGTTTTTCAAATAATTCCAATCTTCAG-------TTGATTACGTCTATGGTTATGGAATCCATCATATAGAAGGCCAATCAAAATATAACTAGGAAATAGAA-----GATCAGA--------TTTTAATGCAGAAT----TGTGT-----------TCTCCAATCACAAGTTATAATGACTCTCCTCTCAGCTACACCCTTTGGCAATGGTTATATTAACTTCAAGGTTTATCAAAGAATATCAGTTGGTGAGTCAAAGCATATCACTTG---TTTTCTTACTTATCATTTGAATAGAGTGATCCATTAAAGAATATATTGGTATCTGGAATACCATTTTGGATATTTAAGAAGAAATGTCCCCTTAAAATAGAGGGAGAGAAGATGGGCAATGACTTCTTGAAATTGCTATAGA--GAGGAACAACACAAGAAGGTGTGTTTtggagaggaa---aggggaagatGTACCGTGTGGAAGA

a score=48822
s chr3           147379688 3478 + 160039680 CAGGATGGCTTGTCCCCTGTGGATCCTCACTTAGAGCCCTAGTGGTAAGGTTACTAAGGGAAACAGGCACAAAAGCTGGGGATTC-AGGCATGTGTTCTCAGGCCTTGGAGCAGGACCTTTCTATTCTACTCCAGAATTGATTTCTGAAGTAGCCCCAAAGGCCACTGCTTTGGGTTGGGACTAGTGGATCGATTTTTCTGTGTTGACATAGTAGGGCAAGCCCTGTCTAGTTTATAAACGGATGCTATATCATTTTCTGGTCTCATATGAAACTGAGCCAGGAAAATGATCCTTATGGGATGGTTGTGTTGTCTTGCTTGAG--GTTTATT--------------------CAGAAGGGAGTAGGA--CTGGGAGAGGAACTGAGAGGAGACAAACAGCAAGTT-CTTCTGAGTCCTAATTTTGTATTTAGCTTCCCAAACATGTCACCACACTGAGAAAATAAATACTGGTTAATTGGCAATGTGGTGACTTCTTATAGAAGACACATTCTAGGATGGGGGTGCAGTTTACTGTATTTCTCACTTCCCAATGGGAGGCTTTGTTGTG-GTTACCTTTACAAGCAGTTATTTGTTGGCAGTGGATTTCTGTAAGCCAAATTATATCTTCTC-TTAAAGGGTCATTTTGACTGTGTATCTATAACATCC-TTTTCAGAATGGGATAATTATTATTGACAGAGAAGATATAGAGACAGAGTCTCTACTGTTCTGGGCAATTGAATAAGCTCTGGGCCCAGTTTATTTTGTGCAGATCCTCACTTGAAGCAGCATTGTTGATTCGTGCTTAGACTACAATGAAAGTAAAGGTGGGCTATCTCCCTTTTTACAAAGGCCAAGGCTCCCAGGACATCAAAGGCTTTTCACAATTCTCTCTGTGTGTGATCTATGAATTCTGGCAACTTTATCTGTGGGGTCACTTAGGATAAAGTCATCATTTGCAGTTGCCTTATTG----TTCCATTTAGAGAACAAAACTAGTTGTTTATGGTTGAA-------TCCATCCTGTCACTTT--AAGAGCTTGGT-------AGATTGGAGTGTTTTCTATTTGCTTGTATGTGACCTTGATTTTATAAGGATCCCATTCCAGTATCTTT-TA--TATTTAAGGCTTTTTTTTCCCCCAAGATAGCAATGGACTTAAA-ATTTATTTCTGGTGTTTTCTGTGGTGAGTA---TAAAATGTTTCTATACCCACAATTTTGTTTACGTTTTCTCTTTTCATAGAAGGTTTGTTG--TGGTAATGATTTGGATGTGAGATTTTCTTACCAGACTCCTGTGTTTGAGTCTTTGATTGACTGACGGTGGCACTGAGTTGGGTGGTAGGGCCCAGCAGATAGAAGCAGTCCACAGTAGATTGTAATTTTTGGTTCTGCCCTATATCCTTCATTTTACAGCCAGGCACGATGGAGCCTCCTCTACTACATGAAGCCTTTGTATCCATTAACGACgactagaaccctctgaaattgtcatcaaaataggtctttctttcctttctgttagacacttctgtcattgtgaccagaaaaataactaatTTTGATGGAAATTGGTATTTTGTTTTTTTCTTTTCAACAGCTTATCTGCTGTCCACTCTTCTGGTCTCTTCTGAGTTGAACTTCCTCCCTGGTCAGGCAGTACAATCTTACGTAAGCTGGGCAGTCCATATCAACTGTGTACCTAGCTCTCTGATTTCTAAGTCTGTTCTTTTATC-ATGGCATT-TAATTCAGTGG-------TTCAGTGT-TACTTTCTTATGTAGTAAGGGTACATTAGTAGTCTATGGGAATATTTAAATTTTCCAGAGTTTTTTTTTTGTCATTCTAAACATGattttaaaaaacatattctaattactttagaattaattaaaatttaatagaaagtttaaaatataaaaataattCTTGTTGGAAAATATACCTCCCAATAGAAGACTTTGATTTTCTAATTACACTCAAAATTCATGGTCAGTGATTTGTTCTGCACACATGTGTTTCAAAAACAACCTGGAGTCTTCTTCATCTCATATGCCTTGTTGAAAGTAGGCTCTCATTTTTCCACCAGTGAACTTCCTGTATTTACAACTATGGGCTCTAACCTTGATGCAAAAAATCCAGATACAATTGGGcttgtagagttcacaccatagtggagaaaagtagatagttagcaatgcatatagcatgcaactaaagcatttatcatcatgggctgtgataaattctacggaaaattaagacagagtcaggggagtagggattctgtgggcttagtgagaagagtggtagctttaagtgggatcatcgcagatgctccactgaaggcgctgtgtctgagaagaaccctgagagagTCCTGCCACTG---TCAGCACATACGTGGCT---GACATCAACTCTACACCGAGATGGATCCTTGCTCTTCTGTTTCTTTTTCAATATTTTGTTGCACTTTATTGAAACTTTCTTGGAAACC---TAAGGGCACAGAAG---------------------------------TTTTCAAAATATAATGCACAACCTCTGTTTACTATACACAGACATGGGTAAGCTAAAACAAGAATCGACATTATGTGCTAGCATTATTATTGAACTAATTAGGAAAGGTTTACCATGGACT---------ACTCATTCTTTCAATAAAAATGAAACAAAAAAGAAAAGAAAACATACAAATGGCCCTAAG--AATGTATATTATTAAGCTATAATGCCATTAATTAAGAAGTG-----TAAACTGggagcttcagagatgatcagcaattatgaattagtactgtccttcgagaagacctaagttcagtgtccagcccccacactgggcaacttacactggaacactaattcACTTTCAACCTCCAGGAGCAATCATGTACACATTCAACAATCAAGCATACACACACTTAAAAAAAAAAAAAGGAAAGTGGAAGAATT-GAATTATACACATGGGATTTT-TAAAGTATATAAAATGCAAAAATAAAATATAGCATTAACCAGAGAATCCAAAGTTGGTGTTAGAAATTCTCCCAGTGAAGTGATGATGTTACTGTGAGTAGCAGTCTAAGTTAATTTTACCA-CCCCACAACACTTATTTCAAGAAAACAGAGCTTAAAATTAATTGGGATATTCAACATATAGGAAATAATATGCAAATTATAAACAAAACAGAAGGATTTGTAAAAAAAAAAGTCTTTGTCTTTGTGAACTAAAG---------------ACTTTTAAAAGTTCAACAATCAATACCAGCTTACCTCGTATATGAGTTGAGGTAAAGACGATAAAAAGGTAAAGTTACGGATGTTGAAAAATAACATCTAAAGAG-----------------AAAATAAC--ATACACTTTC--AAATGAAGAGTATCAATAAAATGCATGTTTTTTAGAAAAGGTTTAAATTTAAAATTGAAACAAGAGGAGTGGATATTATTATTAAAGCAATTACCATGCAA-CAAAACATGATCAGAGATATCTCCTTAAAGAGAGCATGCTTAAACATTCATCATTAAGACACTGGGTTAGAATAACCATATTGT-ACCCATTTTCTC
s HiC_scaffold_1 134071051 2925 + 233722169 CAGGATGG-TTCTCCCTTGTGAATTCACAGTTAGAGCCA-AATTGCAAAGTCGC--AGGAATTCAGAGGC-----CTGACGATTTGAGGCATGTGTTCTCCAGCCTTGTGGCAATGCCCTTTTATTGGTCTCTGGGATTGATTTCTGAAGCAGCCCTACAGGCCACACAGCAGGGTTGGGACTCCTGGATTGATTTT-CTATGTTGACACAGCAGGCTGAGCCCTGTCTGGTTTATAAACTGATGCTATATTATTTCCAGGTCTTTTATGAGAGGGAGCCAAGAAAATCACTCTTGCAGGatggttg-gttttttttcttgtgtaGTTTGTTTGtggggctctgtgtgtgtgtgggagggggtTGGAGGTGGGGAGAGGGCATGGGATGGGACTG--AGCAATTTGCTTTCTCCTCCCAATTTTGTATTTAGCCATTTCAAAGTATCATCACACTGAGAAAATGG----TGGCTAATTGGCAATATGATCGTTTCTTATACAAGCCCCAATCAAGGCTTGGGGTACTATTTACTGTGATTATCACTTCCAAGTGCAatgctttgttgtatttttcctCCACAAGCAGTTATTTGTTGGTAATGGATTTCTGTAAGCCAAATTATATCCTCTCTTTAAAGAATCATTTTGGCTGTGTAGCTACAACACCCTTTTTCAGAAAGGGCTAATTATTATTGACAGAGATGTTAGAGAGGCAGATTCTAC-CAGTTCTGGGCAATTGAATAACCTCTTGTCCCAGTTTACTTGGTGCAGAACTATCATTGAGTCTGCATCCATGATTTGTgtttaaattacaataaaaagaaatgtggtaAACCTCAGTTTATACAAAGACTCGTTCTCCCATGATCTCAAAG-----CCAAGATTCTGCAAGTGTATTGTTTTTGAGTTGCACAGTCTTTATTTATAGGGTCACATAGAATAATGTAGTTCTCTAAAAGTGTCTTTCAGTCATTTTAAATCGGAGAACCAAATTGGCAGTTAATGGTTAAGCTAgtcttcccttttgtttttttaaaagagcttggTTCATTTAGAATTTGAGTGTTTTGT-TTCAGTTGTATGTAACTTTGATTTAATAAGGTTCTTTTCCTAATACCTTCGTAGTTattcaaagatattttt-----caaGATAGTTTTggacttaaatatttatttacgtTGGTTTCTGTGATAAGCAATTTAATGTTTTCATGTGTCCAtaaatttatctgtattttttcatt----------tttgttgtatgGCAAAAATTTACATG-----------------------------------------------------------------------------------------------------------------------GCTTTAT--------------------------------------------------CCCTTCTGTCCAATAGC---------------------------TCAA------------------------TAGAC-----------------------------------------------------TGTTCTTAT-------------------------ATCCTTCTATTTGTCTCTAATTTGAAAAGCCTCTCCTATTACACAGTACACTCTAATGT--GCTAATTAATATATATC-------TGTCTATTTTCATGATTTGCAAGTCTATTCTTTTATCAATAGCTTTGTAATTTCATGACTGGAATCTTAGAGTCCACTTTCACATACAGTAAGGAT------------------GATGTTTATCTCCTACTCTGATTTTTCCATCTCAGTGTGA------------------------AATCACTTT--------TAGCAATTTGGTAAATAAATTGCTAGAT--------TTTTT-----------TACCATGCATTTGCATA-TGTGTGCTTTTAAATa-gcttatcattt--------tgttttataatatacACA------------------TGGAGTCTTCT-----GCATATAACTACTT---AGTAG---------------------------CTGTATTTAAACCACTTGTATATATTGGtgaccaaaacaaaccaaa-accactGTATTTGTGACATTTACATATTAGTGGAGAAAAATAATCAGTTATCA----ACAAAATATTTAACTAAATGATTCAATAATTTAGAATATGGTAAATGCTATGGAAAAGTAGAGTTGAGTAAGGGGTA-AGAAATTATG------TAGTGAGGAGAACTGTAAATTTAAATATGATTGTCAAGCAAGAATCATTGAAAGAATAAGATTTGTGCAAAATCTTATAGTTGTCTAAAACTTGATTTCAATACTCacaaattttgagttttaaaatttgcacATAGggagat-tttgttct----ttttattattaatattctttAACACTTTAATGCTTCTTCCTTGGAAACCACTTAAGGGCttaataggtaaaaaaaaaaaacactactgggtttttaatagtttaaaaacctaatgaacaatatttatttatgagaCATAGAAATATGTACTCCAAATTCAACATATCcattattttttcac---attattgAAATATCTTCAAATAATATATTATGAATTAGAGCAACAATTCATCATCTGGATAA-----ATACAAAAACAGacagaacat-taaaaatgatTATCAGTCAAATTATATTCTTAAACTGCAAtgcaataaataaagaaatgatcgATAAAAT-------------------AACAATTAGATATCA----------CATAGAAAATTTA-------------------ACACTATCTAAAATATA--AGAACACAAATT-----------------------------------------------ATAAACAC-----AGAGAATTAAAATAACAGATGACCAATGAGAATAATACTCATCAAGTCTTATGAAATATAATAAAggcaatattaaaa-----------------------------------------------------------------------------------ttaattttctaatccttaaaatatttacttgaaaACAGCACAGTTTAACATAAa---gtatacttaaaatataaagaataa---gcaACATGCAAGTAAAATGGCAGACTCTGTAActaaaaaa----------tagtaaattaaaatacaatttaactGGTAGTCTGAAAAGACCCAT-ATCAAAAC---TTTATTT--------agttgaaataaagaagcaaaaggatTAGAGTTGcaaatttagagaaaaagtttaaatatagAAGTTAGATGTCTGtgtaaaataatgaatatatttttaaaaatctagaatccAGATCAAATATATAGTTTCTGGAAAAATTTCCTA-TGAAAATTGATTCAAAAAGTATAGATAATCTCAATAGGCCAATtatcataaaagcaaaatatagtcAAATACAGTGCctt-aagagaattttttaaaacttttagttttaACATGACTGATTAGACCCAAC-TATTGTCACTAATTctttc

a score=15363
s chr3           147384189 2399 + 160039680 ATGACGAGATCTGT--ACAATTATTACATGTGAATAAT---TTGACCCCATAATCCCATCTCTAG-GATGTTTTCACTTTGGAGACA----CACAAAAACCTAATATGATTA---CAAATATTTTATGTAATATTTTTCTTTTAGAAAATTATTGGAAGCAAACTA----TTCATTAGTAGG--AATGTAATTAAATGCATCATTAATATTTAAGTAAGTAACAAAAGAACAGCTTAAAATGAAGTAAAT---------------AAAATTGGAAGTA-----------AAGCTATTATCT-ACTCCGATCTATTCCATCTTATACCTTACTCTAAATTCCTTCTACTTCCCATGCCAAACCCCATTCTCTATGAAGCCTTTTAACCGCCACAAACGTA-----GATGCAGCTCTTTTGCCAAACAAACACCTAAAACAAAATCTCTTGCAGCTCACAAGTTTTCCAAACCTTCTAGTGAATGACTTTTCTAT-TGTA-----CCATACACTCATCCTGATTCATGTCTAATTATCCCAGTATCTATTTTGTTATCTCTTTAGATGTGTGGCTGCTCCAGA---------------------CAGTTTAGTTAGAGAGTAT--GTGTCAGCTAACCTATTGATAAACTAGTTTGCGCCATGTAGGTCAGGGGACAGAAGTAAACTTTTGCATTG-TTCCGAGATAGTACAGTCTGCCTACTTAGATTCCTGTCCTTGTTCAGGAGACAGATTTGGAGCTGTcacacacacacacacacacacacacacacacacacacacacacacacacatgcacacaTTCTTGCACACAAACACTCTATTATCCCTTTGTCTCTGTCTGTCTGTCTGCCTGTTTCTCCCTCCCTACCCCTTCTCCCATCACCACACACTGAAGTCCTGCATGGTTGTTCTCCATCTCCCATGAGGGTTTTCATCCTGAGCTTGTGTGTTTGTTATCTGTCCCC-TCTACCATATTAATGTGCTATACCACATTCAACAAATGGCTCGGGAATTCAAAATAAGACTTTTTTTTTTTCAAATTCAATATTTTATGTGCAAATC--ATGTAAGTGTCCTCCTGAGCATTACAAAGAACATCACAGGCTTTCCCATATTTCCCATATCCCTTATCCCAGCTTAAGATTCATTGGTTTAAAAAGACAAACAACAGCCAAACAACAGCTGGGATGCTATAGGAAAGTCCATTGCCTTATAGTCCCTTCGAGCTCCTCTCTCACTTTCTAGATGACTCAGTTTCTTCAAAGCCTGGATCTTCTTTTCTCTTCTCTACAAAGCATTTATTTTATTTTACCTTCTTGGAAACAGAGATAGCAATCTGGAAAGAATGAAGTCCTGCAGACCCTATTAAATGGATTGATAATATGATATTTTACTAACAGCTTAGCTGCCCCTCAGCTTGGTGGCCTTGCATTACAGTGATGACATAATATGAACATATTTCTTTAACGGCAGTTGTACTCAAGAATGTCTATTGCCCTGAATTTTCTTTCATACATTGATGCTTAGTAAATACAATTTTCATGCTTCCTTCTTCTGAAATGTAAAACATTGATTTAACTCGGTGTTTGTGAATAAGAAGGT-CATGGACCCTTTGTGCCTACAATGAGAGATGGCTGACTTTG--GGATCACTTGCCACCATTAATG-TAGTTCTAAGGGGAAATCTTGGTTTGCTGAGACTCCTTGTCTTTAACCCTGTCATTCCCAG--GACAGAATGGCAGCTGCATGCATTCTTATTTCTGGTGGCTTAGTCCTATATTGCTGGACTCTGAGTGCCACCTTCAGTAGAAAATTGGCTTCTTATAC----TCTTAAAATTTTGGATGCTATGTCTGAATCCTGGCTTATTTGAAAAAATAA-------AAAAAGAAGCTATATTTCTCTGCCTGGTAA-GATTTCTC--TGCTTTTTCAC-----CTATCATTTTCCTTATTGATCTC----------AGAATATTTTTTGTAGTTTCCTGTAT-------------------------TGTGTGTGTGTA--------------------------------AGACATCGGTTAGAAGCCAATT-----------------------------------------------TCTAGGA-------ATTGC--------------TTTTT------CCTCCTT-------CTACCAAGGATTCTAGAGA--------------------------------------------------------------------TTAAA------------------------------CTCGGGTT---------------ATCAGAATTTTAATTTT----------------------------------------------------TTAATTGCTGAACCATCTTGCTGACG-------TTATAGAAA-TATTTAAGTGATATCAACAAGTGTCAGAGCCGGTGTCTGGGCAGATCAATGTTAATATCATCTTTCCTTATAT-AATATGATTATTTGTGAAGGCGAAATAT-TGTCAAGTGCCAATCCAGTATGTGCTCCCTTCAAAT--CCCCTGTCTTTTACAGGGTAGAACAGAGGTCTTCTTTAGTTACATCCATCTTGGAAGGAAAGATGACACTTGAAAACTACTTTTGTGGTGGAAAAATCAGCCACTGATCCAGAATTCAAATCAGCTTTTCAGATTCTATTTGTTACTAATCCATTCTC-------AACAGATACATAAAAAAGTC--AAATTCAAAAGTTTTTATAGTGAAGAGAATAT
s HiC_scaffold_1 134075678 2415 + 233722169 ATGAAGAGACCTGTTGAAAATTGTT-TATGCAATTACTCTTTTATTTCAGTAACTCCACTTCTAGTAACTTTTCCCCTTCAGAAATAGTTGCACAATAATGCAAAGGGATAAGCCCAgtttttatgtatattattttgtttgtagaaaatgatcaaaaacaaactaaatacTGATCAGTGAGTGAATACTATTAA------TAGTAATatttaaatac---acaaaagaatatttttaaacaatctaAGTTTATATTGCTAATGACAAGATGGAAACAGTTGAGCAAGGAAATAATCATTTGACTCTGACC-ATCCAGTCAGATTCTTCAC---AAGT-----CTGCTTGGTA-----------Atctactataaa--ctcttatgctTTGCAAATGTCCTCTTGAT----CCCTGTTGTCT--------------------TCTTTAGTCACTCTCATGTTTCTCCATCATCC------ATCGCAACCCTATGTGAAGAAAGACATGCATTCACTCTGTTTAACACATAA--------GGCTTAATTTTGTAA-ATCTTAGAATTATTTACTATTGGAGAGAAGAGCACAGCAAAAGAACAAAGCTTGATCGCAGAGCCGCAGTGTGGTTTTGCCTGTTCTTGTGCTTGTCTGCGTGTGGTATGTAGGGATTCAGATGTAATCTTTTGCATTGCTTCCCAGATCTTACAGTCTGCCTGCTTATAATCCTGTCCTTGTTCAGAAAATA---------------------------------------------------------TGCGTTTGCATACATT--GGGagtaagatattttttaa---------------------------------------------------------------------aagttcttttaggTTATTTTTTATCTCCCATGGGTGTTTGTATAGAgagttcgtttgtttgttttatgtccCCCTCTGCCACATTAATGTACCACACTGCGTTCTACAAATGGCTTGGGAATTCAAGATAAGA------TTTTTTCAAATTCAATATTTTATGTGCAAATCATATATAAGCATCCTCTTGAGCACTGTGAAAAACATTGGAGATTTTGGC-TA--------AGCTCTTTTCTCAGTTTAAAAtttattgg-ttaaaaaaaaaaaca------aagcaacagaaaacat-ttattggTAG--CCTTCCCATCGCATTTTTTCAAAATTCCCATCTCATTTTCTAGgtacttctgtt--ttaaaaacttagttgattctttcctttctcttca--------------------------------------------------------aaGTCCTCCA---------------------CATATGTACATTTGCTAA------------------------------------------ATGCTAT----------TATTACCTTAAC-------ATgcttaa--------------------ttcttttaaaacacaattgATTAATAGA---------------------ctttataatata----attgattc-aTACAATATTTGCAAGTACAATAGTACATTGCCATGTCATGTCCGTATTGGGAATTTACTGACTTtgtaaaagtatataaaaaggtTGATGATAAATCAAAAGGAGAAATCGCACTTGTT---ATTTCTTGCCTTGGAAACAGACATTTCTGAGTGCTAGCATGG-AGTTGCTTCAGTCTCTCGTCTGGGTTGGTTGATC------TCCTCTACTCTGATTTGCCC---CAGTAGTAAATTGGCTTCCTTTACTAATTCTCAAGATTGTGAATGC-ATGGTCAGATGCCTTCTTGTTTGGAGTGGTGGTGGGGGCTGGAATAGATGATTTTGCTCT-CCTGATAACCATTTTTCCATGCTTTTCCCCTATCATTATCATTTTCCTTAGTAGTGTCCCTACTAGGTATAATATATCTTCtaatcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgtttcTCACCAATACTCTGTATGTCAGTGGCACCGTCTAGAATGCAATTAAGCGGTTATGTGTTCAGGTTTTCCTACATGGTGTGGTAGCTCTTCAACTAGAATCGTAACATTGCATGTGTCCAATGTATTTTTGTATCCCCTCCCTTTGGAACCTACAAAATTATCTACAGAGTTGCTCAATGAATAGTTTTAATGTTCCAGGGTGATAACTGATAGTCTGTACTTTTGGGTGTGGGAAGTTAAGTGAAATTTTGCTGCAAGTAACACtgaattttttgggttttttttgtactggggatcaaactcataatcttgtGCTTACTGGGTAgatgcttataccgctgagctaaacccccagcccaacactgaatttctgAACCCTTTTCATCATTCACCATCtcatacagattttttaaatggtGTTAACAAAAGACAGAACTAGTAGCTGGCCAGGTCAAGGTGAGTATTATCTTTCCTACTCTGAACATGAGCATTTATAAGCAAAAAAAATGTATCAGGAGACAATTCAATA---ACTTCTTTTTATTTGCCTATATCCTTTACAGGGTTGAGCAGAAGTATTACTTCATTTAAT-AATCCTGAAAAGGAGAGTGATTCTTAAAAGCTACCTTTGGAGGGGCTAACACACCCAGTGCTCCGGAATGCAAACCACCCTTACAAATCAAATGTGCCAATaaatcattttctgtttattataaAGACACAAAAATGTCCAAAATTCATATATCTTCAGTATGTAAGATATAT

a score=80138
s chr3           147387046 3515 + 160039680 agagagagagagagaga-gaATTTAGCCAATGTCTCCAAGTAGCACTTTTAGCATGGCATATTTTAAATTTTTACTTCTATTATTTAATCAATCAACAGTTATACACAGTAAAGTAATAACTGTTTTTGCAGCTGCATTCATGTTTTTT---AGAAATTTGCATA-----ATTTGTCGGCGATCAGCTGGCTTACAGAAGGCT-CTGTCTTTTGAATGTCATCTTGAAACAAGGTGGTT--TCTGCTGTTGCATGATGTCATC--CGCAGCTGGGTCTAGATCT--AGATTTAAGGAAAGGTAACAATCTCCTAGGACGTGAAAAGTACACATGTTTCTTTTGCAGTTCATGGGAAATTTGATAAAATCCGATTAAAATAAGATTCCCTGGGATGAATTTTCTGCACAGCTTTGGAGTATGCTCAGTAATATGCACAAGTGGTGCTTATTGCCAGAGAATAACTTGAAAATGTA-GAAGATGAGGCTTACAGACCTGTCTTGAAGAGGACACTGTACCGGGCTTTAAATCACACCTTTCTGAAAGACGGTTGCTTATTGAAATAATTGTGGAAGCTGACAATGTTTCCCTGAGAAAGTT---------TCCTTTGTGCCTTATTCATAACAGAAACTGTCTGAGAAAAAGGCCTCCCATTGACCTAGATTCTCTGTTTTCCTGTATGCCAATAAATTCAAAGAACCCAAATTTATGCCTCTGACACCCTCTCATCACAAATAACAATATTCCTGAATATATAGTGCGGTGCTTTTCAAGAAGTGCAAATTATTCCACACATATTTTTTCATTAATCCTCCCCATGCCATCACCTCCACATTTCAAGGCTATGAAGGTTGAGATTGGG---AATAGAGTTACTTATGGCAAATCACATGCTATGCTAAGTCAAGGGTTTGGAACTGAATTCGCAGATTGCCATTCATACTGGATGGTAGTTCTGCTCTTCCTCTTAGCACTACTGAAATGTTTTCCTGAATAA-GTACAGCATACTTTCAATAGCTGAAGATAGATTGTAAGACAATTAAACATCCATCTAATTAATATATACTAAC---AATGCCTCATTTCAAAGACCAATACCTCACCAGGTCTTAGCCATGAGTCATAAATTCATCTGCAATAGAGAACGCTCCTTCCATACCATTGCGGGGAACTTGAATG-TAGCATCATGGCCCTGCCATCTTTCCCTTTGGCTTGGGCTTTGATCATTTGCTTTGCCAAGGGCAAAATTTATATGCATGAACCACTTTTATTCCAATAATGAATGCATTACTTTCCCTCAAGTGTACTGTGAAAAATTACTATGAAGTCATTATTCTGGCTCAGCTGATTGGGATGCGGATGGGGATGAGGGAAGAGTCCCTTTAAGTTTAAATTTTTAAAAGTCCACCTACCTGTCTCTAGGACT--------CCCGACAATGTGGAGAAAACACATTCAAGGCAATCAAAAGAAAACCTT------AGTTTTTAGAGGAGAAGCTTTCTCAATCTCCATTTAAGGAGTcc----------------aaaatatctacttcccagactcctgtgcagctaggttctattacttagatgcatttgcatgggatcccgacatcagaagtgaggcagagaatattttcttg-cagctAAGTATGCTAATATATAAGTGCT-ACAGTCCTGAGGACTCACACTGCTTTAACGTGACAGTCAGGGAGCAGACAATGGTACCACTCCTTATGAGGAAGCC----TGGCTACAGTGGTAGAAATGGCTAAAAGTAGCTGCTGTCCACCCCT-----TTCATG------GGTATAACCGTGAAACTAAACAATCAAGACAATTTCATTAATGTTCATTCTTTTAACCTTTCTGAAGATTTTGGAACCACACCCTCCCTGAAATGGACTCTCTATTTTTTTTTCTTTTCTGT-GTTTGTGAAGGTTTGGTAATATTGC-TGAAGAAAGAGCCTACTTGCAACTCTTAAGTGCTGAGGAATAGAGAT-TGAGAGCTTCATCACCACAGAGAAG----CCTGACA---------TCAAATATTCTTTCTGTCAATTAGTAAATGAAAGT---GTTTCCATTTTACCATCTAAATAATGAATCTCTTACAACCAGCTTTACAGGAGTTTTGTGAATACTATAAGTGATTATGTGTATGAAGTGCTGAATTAATTAGGTTGATATTATTTG--------ACTTTAATAA------AAAACATTCTTTAAAGTCTCTCAATAAAACTGACTTAAGGAAGG----AATTTTAATTCTGCAAGAACTAGGAGTTTCTAAGCAGGAGAGAAGCCCATGGAATGATACAGTCT-TGGCTCAACAAGGTCGTGACAGTTCAGTGAAGTAAATAGACCAGTGGCTGTATGTGCaaatgatgttttatttgaaccacagtcctttcactctcatgatatttacactataatgactgaactgaatggttgccatgagaaccatggaccttcaggttggcaaagctaaagtactcactctctgactctttgtagcacacatttcagaacccAGTA--ATAAGCAATGGCCCCACTACCTCCCCACCCCCCCACAGCCCCAGGAATAGTTTTATCCTAAATAAAGCTACATTTATGCCCACAGA----CTCTGAAAGCAGCCAACAGGATTATAAATTTCCCCACTTACAATACAGGAGGAGTGGCCACTTGTCACATTCCATGGGACTGCTCTGAATTCTGTCACATGGTTTCCACTGGGCTCCTAACTGTCATTTAACTGTCTGCAAAGAATGAAACAGTTTATTGAGgatggtgcacgtctttgattgtagcactgggcactggaaaagcagaggcaggctaatctctgtgagtacaagccagtctagtctacatattgaggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagGAAAAAGAAAAA-----------------------TGAATTGACATATACCAGTGTCATGGTT----TTCTACTCTGCAGCTACTGAGAGT--TGCT-CATTTAAAT--ACTTGGG------------------------------------------GCTCTGTCAAAA--------------GAACAGAAGTTTTACTTAGTGTGTCACATAAATTGTCTACCACAAATGCATCACAAAGTGCCTGAGAGCAAGATAGATGCCCC-CAAATTTGCTACCTGCTTTGCCCAACAGTATTGGTACCCACTTAGAAGTAGTAATACGAGCACTGGGCTAGGGGTTGGG---TATAATATCTTATTGTATTTCAA-TACAGACTATCTTGTGACGACTAT-----TTTGTTTTAACTTCCCTTTTCATACACACAT----------------------GTCTAAGGGCCTTTCTCATCATTAAATGAAAACACTCATCAGAAGCCCTGTACTTGGGTCCTATGTAGCATTTGCAAAGCTGTCCAGTAAGTTGTAAATGCTAAAGAAAAGACAAAGATTGTGTTTGTCTAATGCCTCAGAGGTTTCACATTGCATCTCGTATTAGTTGTCATACACAGTAACAGGAAACTCGTTGCAATATTCCAAGAGAGAGAACATTTATGTCCTAAGACTAGTGTTTGACTCTTTTTTTTTAATAAAAGCCCATCCTTGGTGGGGGTTGAAGGTCACCC-----TGTAGTGGAGACtg
s HiC_scaffold_1 134078098 3376 + 233722169 AAAGAGTTAAAAAGACATGTATTTGGTAAAATCAATCATATAGAGTATttggagaaatacattttaaaattatgttttcattgGCTATATCGT-----GATATGTGTAGCAAAACAATAATTACTTTT-CAGTAAcagttatgtatttttataaacatttacatAGAATTATGCCTTGGTCATTTGCCGGTTTATGGAAGACAACTGTCCTTTCTGTGTGGTTCTGAAGTAAGACCTTTGCTTTTCTATTGGATGAGCTCATAAACACATCTCAGGCCAGCTCTCCAATTTCCAGGTATAGCAGAAGTCTCATTGGACATAAAATTTATGGATATTTCTTTTGCATCTCATGGGAAATTTGGTAAGATCAGATCAAAGTAAGATGCACAGGAATGAATTCTATACACATTCCCAGAGCTTGTTTAATC-TACTCATAAACAGTTCTCATTGCTGGAGGATAGCTTAGAAATCTAAGCAAAGAAGAACCACAAACTTCTCTTTAAGAAGATACTGCACCCATCTTAAAATTGTATCTCTAGGAAAAA-GATAAATTACTGAAATAATTACAGAAGTTGACAATTGTTTCCTGAGAAAGTTAGAAAAGTTTCCTTTATGTTTTATTCAGAGTAGAGACAGCCTGAGAAAAAGGTCTTC-ATTGACCTAGATTCACAGTTTTCCTGTATGC-AATAA-ctcaaaaaacccaaatttaTGCATCTGACACTATCTCATCATAAATAACAATATTTCTGAATATATAGTGTAATACTGTTCAAGAAGTGCAAATCATTATGGGCATATTTTCTCATTAATCTTCCC-ATGCTATTATCCCCAAATTTCAGGGCTGTGGAAATTGAGATTGAGGGAAGCAATGTTTCTTACCCAAAAATATGCACTGTGCTAAgtaaataacttaaaaatgaaTTCCCAGAGCTCTGTTTGTGTTGGATAGAAGTTCTATTCTTCCACTTAGCAGTACTGAAATGTGTTCCTGCACAAAGTATCACATACTTTAAATAACTAAGGATACATTTTAGGCCAATTAAACAACGACCTAATTTATTTACAGTAGCCTGAATGTCTTATTTCAAAGATCGATACCATACCAATATGGAGCcatgaaatataaattcttttgGATAAAAGAGAGCTGCTTGCCTATCACTTTATAGAACTTGGCTGCTAGCATCATGGACCTGCCATCTTTCTCATTGCCACAagctttgataatttattttgccAAGGGCAAGATTTATATGCATGAACCACTTTTATTCCAATAATGAATGCATTACTTTCTCTCAAGTGTACAGTGAAAAATTACTACGAAGTCATTATTTTGGCTCTGCTGATAG------AGCTGGTGATGAGAAAATAGTCCTTtaaaactt---tttagaaaaaaatagttaacTGTCTTAAGACCTCATTCTTCCTCGGCA--GTAGAagatacaaatgaaaaccactctGAAGAAAAGCCTTACTGGATTTTGTTAGAGAGAAATCTTCACAGTCTTTGTT----GGGCCCTCCtcagagaagagggaaaaaatgtaCTTCCCAGACTCCTTTGCAACCATGTTCTGTTACTTAGATATGCTCGAGTGAAATT---------AAGGTAAAGCAGAGAACATTTTCTTGCCACCTTAGT-TGCTGAAAGGCAAGCTTTGACAGTCATAGTGGTTCACAGGATTTCAAAGTGACTTTTAGAGACCCGTCACCAGGACCA-TCGGTGTGAGAAGACTGTAGTGGCTGCAGGTGCAGAAGCTggtaacaatggccactgcccaACTTTTGGAATTCCTGTGTACTGGTATGACCTTGAAACTaaaagttcaagggcagccca-gAATGCTCATTCTCTGGTCCTTAC-AAAGATTTTGTACCCATGCACTCTTCCTTGTGAACTCACTTTCTCTTTGTGCCTGTTGCAGTTCTGGAAAGTTCCGAATCACATCATGAGGCAAGAGCTAGTCTTCCGCTCTTCAGTACTGAGAAATGGATAGATGAGTGTTCAGGTGTCACAGGGCAGGAGACCCAGCACATTTGGGTTTACATGCTGCTACTGACAGTAACT--CTGAAACTTTGGTCCTCTCTTTCTCATCTTAAGAATAGATTGACTAATATCAACTGTATAGGAATATTGTGATTACTA--------TGTATGTATGAAGTGCTGATTTAATTAGACCAATAACAtttaataataacattttaataatactGTAATACTATTTTTAAACCCTTTTCCTGAAGTTGGattaaataatgtgaaaatttgTCATCTCTTATGAAAGGGAGTGAACATGCAGGAT-GAGGTCCA-AGAAGGATATAATCTGTGTCTCTGTAGGGTTAAAATGGCTCAATGATGTAAACAGACACAGGAACGTA-------------------CTGAAACACAGTCACACTGTTTTGGTGACTTTTGTACTACCGTGACTAGATGGAGTATTTTCCACAAAAACCATGAATCTTCACGTTGGCAGAGATGAGGTGTTTA--CTCTGATCCTGTGCAGAAAAAGTTTGGTGGCCCCTTAATATAAGCAGTGACATTATTA-------------------TTCTAGCAGCAATTTAATTCTAA--GGACTTTTTTTTATGAACAGAAGTGACTTCCAGCAGCAATCAACA--ACTGAAAGTTTCCTTGTTTATAA-------------------------------------------------------------------------------------------------------GTAAtag--------------------------------------------ggaaa---------------------------------------------------gaggagaaagacacacacacacacacagagagagagagagagagagagagagagagagagagagagagaaagagaaataaggcacGTATTTATTTCTGCCTTTCAGTTGGATTAAATTATTTCTATCACATTGTTGCCATTCAAC-CAACAATTATTAAGAGTCCTGCTACATTTGGATTGGTTTGGGTGAAACAGAACCCTGGATTCACCCAGGAATTGTTGATGTACTGCTCATCCGAAAACAAGGAAGAAGGGAAACAGAAATGCTTGTGTTTGGGTGACATGCACTGTTTTCTACAAACATGGAACCAAGTGCCTGAAAACATTAGAGATATTCCACAATTTTTCAACCT--TTTGTACAGCAATGATGGTGTCTCACTGGCTTGAGTCAAACGGTTCCAGAGCCAGGAGTTTGGAGTCATTGTATTTCATGCTCATTCAAGTAAACACTAGCTTGTAAT-ATTATGggactttgtttt--------ttttcattgGTGTATAAAAGAGTATAAAAGTGATGCAATCTAGGGACCATTCTGGTTATGAAATAAAGACACTCATTAAAAGAT-----------------------------------------------------------------------TTGTATCTACCTAGTGCACtagaatgtttacatttcttccCATAT---------AATATAGTAATAGGATGCTTATTGCAAGAATCCAAAGGAAAATGCCCTCAAGTTGAAAGATCAGAGTGTGAGT-TCATGTCCTGATAAATGCACATCCTAG--TGGGATTGAATGTCAACCAGAGGTGTGGGAGAAACTG

a score=103524
s chr3           147400252 5282 + 160039680 [encoded data, 5879 characters]
s HiC_scaffold_1 134090635 5346 + 233722169 [encoded data, 5879 characters]

a score=20343
s chr3           147406379 588 + 160039680 AGGCTTTTTTAATTTGCTCCAGGAAAATCAGGTGACCAGGGAGGTATTTGCTGTGGACCTGGGGTGATGCTTTTCCTGGGGTTTTCTTGCAATTTGCATCGACCTCTACATGCCACTTAACTTCTATTTGATCTATCTCCCAATTTATACAATAAAAGAGAATAAAGGGATGTCTGTAAAGGGTTTTGAAAGTGCCAGTGAAAGGGCCCTCTGAAACTCAGGATGTCTGAATTTCAAAGAGTTAGGAGGACAC---GTTGGCTTTTCAGAATCCATTTGAAACCACATAAGTGGACACCGTGGTATTTGGTGAATGCCACATAGTTACTCGGCAGTATTCCTGAGGGCCAGGCAGATGAGGAGGACATAAAAGTGTCATTTTTAAGTTGAACTTCTAATTAAAACACAATGAGAACAAAACAGAGAAGGAATAAGTTTTGAACAAAGAATTGT-TTTGCAATATTAACACGGATTTATGGAAATCAGTTCCCTTAGATATTTTAGAGGCTCTTTCTGCTATAATTAGGGTCCAGGTTTACTTTTTATATACTTTAGTTACTTTCCCCTTTAGCCTGTTTCTTTGTCATATTG
s HiC_scaffold_1 134096692 562 + 233722169 AGGCTAGCTCAGTCTGCTGAAGAAATATTAATTGAGCTGAGTGATAACTACAGGTGTGTCAGAATGATGCCTTTCCCTGT-TCTTCCAGTAATTTACATCGACCTCTATGTGCCACTTAACTTCTATTTGATCTATTTcccaatttataaaataaagaagaataaagtgaTATCTATAAAGTGGTTGGAAAGCTCCTGGGGAAGGTCCT-----AACACAGGATGCCTGAGTTTCAAAGAATGAGGAGGACATTCGTTTGGCTATTGagaaagcattttaaatcatGTAAGTGGACACAATGGTATTCTGTGAATGTCACA---TTACTCAGCAGTGTTCCAGAGAGCCaaataaataaggagaaaatgaaagtttaataTTCAAGTT-ACCTCTTAATTAAAGTA-GGTACAAGCAAAACTTAGAAAGAATGAGTTCGGAAC--TGAATGATATTTGTGATATCAAGATATTGAGATAGACACAAATGCACTTTGACATTTAAGCACAGTACTCTGGTA----------------TTGACTTTTATACACTTGTGttctgcttttctttattctattttcct-tcattttg

a score=53269
s chr3           147407402 2324 + 160039680 TATCTGTTGAGTTTTTTTA-AACCCACAATTCTACAGAGAGAAAACATCTGTCACCATGGCCTCCAGTGAGGTCATCTAAATCAGCAGACGACATGATTATCTACATGAACCTTTAAAGAACCTTCTCCATCCCCCTACCTGATGGAACTCTCTCACATTCTACCTACAAGAAGAAACATTCACAGAACCATCTCAAGGGATA-TGGGTGGCCATGAATTTCCCCTTGACTCACAGGCAGACAAAAACAATTTGACTCCTTGTCATCAGGAAACAAAGTCTCGTTGCCATGGTCCTTTGATCTTCTGTTGCTCCTCAGAGGTTTACACATCATTGCTTTTCCACTTCAGGCCATTAAAACCATTTTGCTCCCTTATATATCTGCTAAACATAGACACAGGAATGAAGAAACACAGCCTAAATACAGATACCAATAACTGCTTGCAGGAAGTATCGAAAACAGCTCTGCAGAAGATTGGGAACCCAAACCTTTTCCACTGTGAGCTTTAAAAGTATTTCCTTTGATCGTCTGCAAGGTCACCTCACCACAGGCGTGGAATTAGAAATTTGTGAGGACTGTTGAGTACTGAAAGTTCATAGTACAGCAGCTAGAGGTTATTAAACACAGAGAACCTCAAAG-CATCATTTGCTGTGAAGACAGAAAGGAGCTCTGAGTGCCTCTGCCTGTTGTTCTGCAGGCCAGCTGCAGTGGCAGTCAGAGTTTGTGTCACTTCTGTTCC---------TAAGCTGCCAGTGA-----------AGGAACCTACAGAATATCCTTTAGTGAAGAGACTGGGTGATCCAAGACTGACAGACAGACAACCCTCCAAATGCTGGACATGGAAGGT---TCTTCAGAGGACAGAGGACCCACAGCTCAAT---------------------------GTTGTAAGCAAACAATATAGT-------------------GTTTTAGATCTATAAAGAATTTTACTTGATTTCTG-TTTGGTGTGGGCTGGTACCTTTCTAAGG----------------ATTCCCCT--------------CTAGTCCATTAACTGTAATTATCATCATTGCCTTC---CTTGAGTTGCTGACAAGCCACATCATTCCATCATGCCCAGGCACACTGTGGGATTTACATGGGTGCATGGAGGTTGCTGGCACTGAGCAGTTTATTCTGTGTTGTCAGAG------CTGGAAGGTTGAAAACTCTGCTCATCGCACTCAGGAGTTCTCTTTCTTACTTTGGTACTCATTGCTGAACACTCTTTACTTGGTAATTGGAGAAAGTCTG----GGATGG-AGGTTTTAGGTCATTGTTAATAAAA-ACACATA---AAGTTAGTACTTTCC--TGTAGCATTGAGGCCAGAAAGTATGTTTGGGAAACTCTCAGAAC-TTGCAATCTTTTTCCCTTTA-AAGTCATAAAGG---GGTCAGCAATGTGGAGCTCTAAAGAACAACAGGCAGGGAAGGGTTTCTAACTGCCCATGAAAGC-AGGGACGTCTTCCGGGCTTTCTAACTTG---TCAGAGCTTCAGATAGATTGACAGAATCTTTCCCTAACTACCTGCTAGGCTCTATTCTACAGGCATCTCTGCTGTCCTCCGATTCTTTGTGGCTTGAAAAGAACAACATTGTTTTCCATCTCTCTCATGTCTCTCCTCCAACCCTCTCTTCTTTTTGTCTTCTCTGCTGCTGTCAGGCTTTA-AGCTGACACAGCGGGTCCTCCCAAGGGTGTTCAGCAGGGCTGTGGTCTCTAGATGAGCTATCCTCC-TGTCCTCGGATCAGTAACGGAACAAAGGACCCACGGTGAGCACTGCAAGGAACAGTTCTTCTTTACCCAAGTTTTGTT----CTACTCTAGGCGGCT--TCTCAGATTCGCTGGCTCTGTATATCACAGACTTTCCCATTTTGTTCCTTTCTATTGAGTTTCTTACTCTCCAAGGAGACACTTAAGAAGATTATTCTGGAGTTTCTTCCCT-CAATAACATTTCAATGTACCTACCTAAAGTATAGA-GCAATATGAAGATATGGAAATGTCAGACCAATGCCAATCAGC-TCCCAAGGTCGAT---ACCTGGATTGATACCAGATTCCTGCCATT-TTTTCTTAAACCACAGAAAATA-TGGCACCCAGAGCTGGTGATTCTCATTGGCTAG--GGAAGGTCCTCCATTTTCAAAGG------CCCCATCATGCCAAGATGGGATCTGAGGGTGTTTTCAGATCACTGGGTAAAAGGATCCACAGACATTTAGTCATATACTAAATGTTCTTTATGACTCCATTTTTAGACTCTGTATTTCCTG----------------CTTCCTTTGTCAAGTATTGGGTCTAGTCTTTGCCTACCATACATCTCTTCTCCATTTTTACTGCTATTATCATAATTCCTATGAGGGACATCTCTTATCCTTAACATATATCTTCTAAGACTAAT
s HiC_scaffold_1 134098433 2427 + 233722169 tatctattttgttttatgagaaCCCTTTATTCCTCAGGAAGGGAATATCTGT-GCCA---CCCACAATGAGACAAACTCAGTCAGCACATGAGGAGATTGTCTGCATGACCTTT--AAGAACACTCTTCTACCCTCTACCCTG-----CCCTGTCACCCTGTAGCTACAAAAggaaactttcaaagaaaaatctcACTGTGTACTGGGTGGCCGTGAATTTCCCCTTGACTCACAGACAGATGAAAGCAATTTGAGTCCTAGTCACCAGGAAACAGGAAGTCTGTCCCAAAATCTTTTGATCTTTTGTTGCTCCGAAGAGGTTCACATATCATTACTTTGCCACTTTAGGCCATTAAAcccattttgct-ctttatatacCTGCTAAACATAGAGaccaaaatgaagaaatacagcCTAAATAAAGACACCAATAACGGCTTACAGGAAGTATTGAAAATAGCTCTGCAAAAGGTTAGGAGCCAATGCCTTTTCCACTGTGGGCTCTAAAGGTGCTCTCTTTGATCTGCTACAAGGTCCCTTCACCACAGGtatgaaatgagaaattt-tgaGGGCTACCGAGCACCGATTTTTTGCAAAGGATCAGCTAGAGGTTATTAAACATGGGGAATGTTGAAGTCATAAAATGCTAGGAAGACAAAGGGGACTCGTGAGGG-----------------------CAGCCACAGCCATAGTTAcggtt--tttcatttctgactcTTGGTTCTGTGGGCTGAACGTGAGCACCTCTGCCAGGAAGTTGTACAAAAGCTGTGATCGAAAAGGTTGACTGAACTGAGATGACCAGA-----AATAGGCCAGAACCCAGAGGTAGGAGGTTCCTCTCCAGAAGCATGCGGTGGCACACCTTTGTACCTTATTAAATTTCTCCCCAGTTGGGGCTTTAGGCAGAAAATAGAGCAAAGTGGTTAAGCCCAAAAgttttggagaaaaagagaactgAATTTGATTGCTGACACTGCATGGTCTAACATATACctattggaaaaataaatcacTTAATCCCATAAAGTGGCAGTTAGCTGGTTTGTAAAGTGGTACTAAAATCAGTGCCTCCTCTTTTCCATTGCTATGAGGGTTATGTAATACAATATG---AGGCCCATAGTGAGGGCTTCATTG----ATGGAGGTGACAGTTACAGAGTAGACCATTGGGTGCTGTCTCAGGGAACACTTGAAGTTTAAATACTCTCCTCATTCTACTCTGGGTTTCTCCCTCCTCCACTGATCCTTGCTGCTGATGTTCCCTTATTTGATAattagagaaaggaagaggaggatggaAGACTTGATGTCACTGTGGGTAAAATGCACAGAGACAAGCCTGGGCCTGCCCTTATGGCGTTGAACATAGAGAAAGCTTTGGAGGAACTCTCTGAAAGGTAAAGTCATTTTCCCCTTAGAAACTATAAAGAAGCAGCCAGTGATTTATTATCCAGAAGAACAATAGACAAGAGAGCTTCACTGCCTGCCTGTGAAAGTGATGAGTGCTTGCTACGCCTCCT--CTTGCACTGGAAGCTTCAAAGAGTTC--CAGCCCTTTCGCCTGACCACCTGCTATGCTTTCTCCTAGAGGCACTTCtgct-ttctctcattcttttggCTTTAAAGAGAAATTTATCTTTTCCCGTCATTCTCATTTCTTCTCTCGAATCTTCTCCTTgctactttttctattttgtggtCCGGCTTTGTTGCTGACCTGGGTAGACATCTCAAGAGCTCTTAGGAGAGCTTTTGTCTCAGGATCAGGTTTTCTCCTTGTCTTCTGGCCAGTAATAGAACAAACGACAAAATGCCACTTCTCCAAGTTCCAA---AGCTTTATGGAAGCTTTGTCTGTGCTCCTTTGGTCCTTTTCTCTCCAATTCACCAGCTTTTCACTGAAGGGACTTTCCtatctt----ctttttattatctCTTGACTTCTACAAGGAGTGGATGAGGCTTCCTGTTTTTTGGcttcttatttccaataaa--ttcaaaatactttCCTAAAATGTGCAGGCAATATGAGAAAGTGGAAAAGTCAAAATAATGTCAGTCTTCATTCCTAGGCCCCCCTGCCCTGACTTGGTGGCAGAGTCCTGAATTTCTCCTCCTAAGTCATCTTCAAGATTAACCTCCAGAGCTTTTAGGGTTAAATGGGCTGCTGGATGTTCCAGTGTTCCCACAGTGTCCTCCTCCCTGCTGCCCTAGTGGAATCTGGGAGCTGTTTTGGAGGCCTGCACAAAGGGGCCCATC-ACCCTCAAGGGTGTACCCTGTTTTC-ATGGAACAGTCTCCTTGGGTTATCATCTTCCTGTTTCACTTTTGTAGGACTCCCTTGGTCCTAAATCAAGTCTAGCCCTAGTCTATTGCACATCTCCTCTCCATTTTTACTGATGCTACCTTAATTCAAGTGCTTATTATTTCATATCTGAAGTAT---TCTGCTAATACTTAT

a score=34717
s chr3           147410144 1379 + 160039680 TTGTATTTTAAAAGCTTAATTTT--------AAGAAAATGCACTGACATAAAATATAAGACCCAGTGTCAAATTTCTTCAGTTTTAAACA-GTGGGGTCATTTGGTTTTGCCAAAAGGG--GAGGTGGCAGGGAATAAAAATTTGGTCTTACATAGTCTCTCCTTTCTCTCTTCTACCTTTGATGTACATTAGTTCCCATGGAAACTGAGTTGGGGTTGCTTAAGAATGACATCTACAAATGTAGTGTAAGGTCATTTTTATCTAATACTTTGAAATTTAAACCATGATTTGTGATATACAGTGAAGCCTCCTTAACATATTCTGAGGGACTAGAAAAAGACAATCTCCTGAAAGAAGAAACAAG--ACGTGTGACTGCATTATGCCAGGTCTCAGCAAGTTCACTCTTGTTTCATGCTCAGACAAAC--AAAACACCTCATCTCCCCAGTTTGCCTGCAGGAGACATGGCTGGCAATGCTTGCAACCCCCAGGCAGGAGGAGTGAGAGACACTTGAAAAGCTCTGTCCTCATCCTCCTTGCTGGGTAGCCTGTGAGGCCACCGTGGCAGGAACAGATGTCTGAGGCTCTAAATGTCCCAATAACTAACAACACAAGGGCAGTGATAAAACTGAAGGGGGTGTCTTGCTTTTGTTCTCTTTCCACCCATGCCTGTGGTCTGACCTTCATAGGGCACTGATATCATTTACTTTATTAGT----CAGTGCTT-ACCTATAAATCCCAGGTGCATTTAAAGGGACAGAAAGCTGTGTCTGACGAG---AAGTGGCACTTGCCGATGAA--TGACTGG-GGTCTAACAGAACCCGACTGACTAACACAGACCTCTAAGATGCTCTTCAGAG---AGGATgcatggatgctgagctagatggtctgggttcaaatct----ttatcccccttgagagctgtggggaattaggcaaggcaaaacctttctgagccttaCAATGCTGACACAAAGGATGCTATGCAATCAGAAGTGGACTAGCTTGTCCAAAGGAGACAAGGCACAAGAAACTGTTTCAGCACTAGCAGGTGCTATA-AGTTAGAGATAT----TGGTGTTGCAGAAATGAGGTGGTTAGCCTGCAGGTGTTTGTGTGGTTCTGTTTCTGTTTTCACAATACACCT---------------------------GTTCCATGCCACAGTTAAGAATAATTCAGA-AGCCATTTACAATATACGACCACCATCTAAAACTTGTGGCCTGTATAGTTAC--TTAGGACAGTGCGAGAAAAGGCAAGAGGAGATAGATGCTTGGGCTCCTGGCTGCCCTGATCTAGAAGTGACGTATATCAAGCTGCACTTTG-GCTGTATGGGCCAAACATAACTGCAAAATTAGCAT----GACCTCA-TGAGCCTGGTGATGAATGGCATGCACTATTTTTACCACATTTT
s HiC_scaffold_1 134105148 1392 + 233722169 TTGTAGTACTATAGATTAGCTTTTCAGGGGGAAAAACTTATATTCACATCAAAAATAAGATGCAGTATCTAATTTCATCAGGATGTAACATGGGGGGTCATT-GTTTTTCCCCCAAGGAAAGAGGACGCTGGGACTGATAATTTGGCCTCACGTTTTCTCtcgtctctctttttt-tctctgatgtATATTAGTTCCCATAGAAACTATGATGTGGTGTTTTTAGAGTGACATCTACAAATGTAGTATAAGGTCATTTTTATCTAATGCTTTGAAATTTAAACCATGATTTGTGATATAGAGTGAAACCTCCTTAACATATTCTAAAGGACTATAAAAAGACAATATTCTGcatgcagaaaaaaaatacatgtgacTGCATTATGCCAGGTCTGGGAAAGTTCGGCATTGTTCTCTGcatagagaaacagaaagagccgCATCT-CCCAGTTTGCCTGCAGAAGAGTC--TTGACAATGCATCTGGCTCCTTAGTGTGGGGGAGGGAAGCCCCTC-----CTTCTGCCTCTACCTGTGCTG-TGAGTAACCTGGGAGGCCACTCAGAAGGGGCAAGGGGTCC--AGCTTTAAGTGCTGCAGTAAGTAGCTGCATGTAGACAGTCATAAAGCTGCAGAGGCTTTCGTGCTCCCACTAG-TTTCTACC---ACCCCTGGCCTGCCATTCTTAGGGCAATGGTGTGATGTTCTTTATTAATTTACCAGGGTTTCACCTATAAATTCCAGATGCATTTAAAGGGAAATATACATGTTTCTAAAGAGAGAAACTGGAGTCTTGGGATAAAAGTGACTTACAGTTTAATGGAAC----ATGATCAGCTCAGGCTTCTCATGtgcttttcagagaaaaaaacatctAGGTGCTGAGTCAGACACTCTGAAATCAAAtctcaaatcatttttttttctggctat-aTACACTGAGCAAGTGAAATCTTTCCTGATCCTGAGTACATGGATCTGAAGAGTATTGTAAAGAgggaaatgaatgaatacatCCAAGGGAGATGATGTGTAATGAAGGGCT-------TAGTACCTGTTACATCCTCAGAGCTCTAACACTGTGCTGCATAAATATGGCAGTGGTCTCCTAGAACTTTGT-TTGTGCCATCTCTGCCTTCACTAT-CATCTTCTGTAGTGTATAGAAATTGTGCAAGCATCTCATCTCCTAATTAGGCATGGCTGAAATGGCTGTCTCCATTGCACAAGCATCCTTTGGAACATGCGGCCGGTA-GGTTACCTTTTGGA----GCAGAGAAGGGTATGAGGAAGCAG----TTAGGCTCTAAGATGCCTCAGTCCAGAAGTGATAGATGTC------CCCTCTATGCTGT---------------CTGCAAAATCAGGCTCGGAGAAATCACTGAGCATATCAGTGATTGGTACACATGGGTTCTTCTACACATT

a score=39954
s chr3           147412213 1784 + 160039680 atctgcacacacaGACACATACACTACACACAAAAA------CATTAAATATGCTTATTAGATTTCAATGGTTATACCAGGTGGTTG-TCATC-TAAACAGA--AAACCATAAAACATGCATATTTTCATGAAAATGCCAGATG-------CTATGTTCCTGATGACGCGCCTGGGTCATTTGCTGTCCCAACA--CCACCAAGCCTATGTAAATGAAGGAAAG----GCATTCTT--------------------------CAGGTCTCCTGCC-ACAGACTTCAACTTTAAGAGGTGCATAAATAAACACCTTGGCATGTGTGATCTCCTGACCGAGAGGTGTTAAATTCCAAGAACTGTATTACTCTGCTACTTTTATTTGTCTGTGGGAAATCGTTTGATTTATGCCCAATCTTAGAACATAATAAAAATGTGCAGGTATGCTCAACTAGAGATATTCAAACCTGTCAAATAAAAATTTTAGTTGCCCTTAAAATCTACAAATAAAAGTAACTTTTGATTAAGGATAATACCGCTTATATCATATGCTTTTCTGTATTGAGCCTCAAAAACATATCCAAACAAATCCATTTCAATATAATA---TATATCACAAGCTTTACAGAGGAAGTTCT-CTACGTGATGAAAG-------TCTCTATTGGCAAAGGAATTACATAGGAATGGCTGTTCTAGCCCAAAGGAGGTAACCCAGGTTACACATGATGCAGTAATGGAAAAACGGACCCAAGCAAGCCCTGAAGTTTCCCG-ATCTGGCTTATTTATACT--CCATTCATCCTTAGTTCATGGGCTTTCAAACTTCAGGTACTTTCCAGTTAGAACACCCAAAGTGCCAAAGCAGTTTGTTTATAAATCACAAAGGACCAGAGTAAC--ACGAGACTGTTGGGGAGGAGTTTACAGTTCAGGCTTCAAATCCTAGAGATCCTCTAATTTACAAAGGTAGCAGGTCTATGCAGGTGAGGCTTCAAACCCTAGAGATCCTTCCCATTTAGAATCGT--GGCAGGTCTATGCAGGGGCAGGATGTGGCTCAAA--CCACCTGGAGAATTTCCGTTCCACTATCATTGTATTTGTTGTGAGCCTAGGCCAGGCCTTAGGCCTGAGGTTTTGCTC-TGGCTTAAATGAGGGAATGAAAGTCTTCTCTAGCCAATGCCCTGCTGAGCCTACATTTTGTTCTGT-GTCATG---AAAGCATGCTCATCTCAGATTGGAGCTCAGACCGCCATGGCTGTACCTCAAATAATGAAACATTGCTATTAAGTTGTGTGTA-----------------AAAAAA--------------AATTCGCCTGTCGTCTAGAGTATTTGCACTCTTAAATGTTTTTATTTTCCA---TGAGATTTTCATTATAAAA---ATTAAGTATACTTATGTGAATGCCCAT-CCATT----ATCTCTTTGAACCCTTGTATAAGCACAGGATTGAGAAACTGTCACGAGAGGA--------------------GCACAATGCCT----TT---GAGATAGGAATG-TGCACCACGCTGTCCCTATGT------CAG--CCTACAGAGTGGCAG-TTCTCA--GCTTGGGAACAAGGGCATGGGTGATCGAATGAGAATGAAAAGTTCCTGAACGCATCCATAGCTTAGTCCAGGTTGACTCTGTTCAATA-----TTGGGGATCAGAA-------------GAAGTCTGTA---------------------------------------GTTGGACAGTGGGATG------------CAGACAGCCACCAGGGGTGCTTTCTTGAC-------AAAGATGATTGGAGCTAATTGTGTGCTTGGGACTCAGTGGCATCAGAGAGGCACAGTTGCATAAGTGTCAAAAA------AATTACCTGTGACTGTGAGTGGGTAGTGAAGAGTATCAGCAATTCTCACATTCATTTGTACAAGGCTAGACATATTTGGAATTAGATTTAGATTTt
s HiC_scaffold_1 134106511 1937 + 233722169 ATTGGTACACATGGGTTCTT---CTACACATTAACAAATGGTTATTAAATCTTACTGTTTGACattcataataaaacaaaatttttgctcATAGTaaacaaatagaataataaaacaaGTGCATTTCAAACAACAACCCAAATAGCAAAATCTGCATTCCTGATGACATTCTTATGTGATCTGCTGCTCTGCTAATTTATCAGCCCAAGGTGGAGGCGGGGAAACAATACATTCTTTATAGATGGAGTAAGTCAGATTGTTTCATGTCTTTTGCCCACAGATTTAAACTTTGAGAAGTGTATAAATAAGCAACTTAGCATATGTGACCTTCTGACCACAAAATGTTAAATTCCAGGAACTATATTACTCCACTACTTTTATTTGTCTGTGGGAAATCACTTGATTTATGTTTGATCCCAGGGTACGGTAAAAATGTGCAGGTATGCCAAACTAGAGCTATTGGAagctgtcaaataaaaattttagctgCCCttaaaatccacaaataaaagtAATGTTTGATTAAGGATAATACAGTTTATACCATACTTTTATCAGTATTCAgccac-aaaacatatctaaacaatttaattttaatatattacagTATATTCCAGCTCTTGGAGAGGAAATTCTCCTGCACGATGAAAAGGGAAGTTTCTTATCTGCGAAGGAATTATAGCAGAATGGTAGTTCTAGCCAGAAAACACTAAACCAACATAGACAGGGTAGATTAGCTGAAACATTCAGCCAAGAAAG-TCTGAAGTTTCTTGAATTTGGCTTATTTACATGGAtcattcattcttattttatggGCTTCAGAATTTCAGATGGAGTCCAGCTAGGA-------------------------TTATAAAC--CAAAGTGCCCCAATAACCTACAAGACAGTTGAAAAGGAATCCTCAGCTCAACTTTCAGACTCTAGAG---------TTTGGAATAAT----------------------TCCAA-----AAAGATTCTCAGCTTTTAGATCCTTTAGACCAGTCTACACTGATGCAGAGGGAGCCTTAAAAGCAACCTGGAGAACTTCCCTATCTTTAACACTTCATTTATGGTTTACCTATGTCAAACCTCAGCTATGGAGTTCTGGTCTTagcttaaa-gaggaaaataaactttGCTGTAATCACTGCTATGCAGAGCACAGGTTCTGTTTTACAGTCATGGTTAAAGCAGGATCACACCACCTTTGAATTCAGACCACT----CTGCATTTC---TTCTGACATGTTAGTTTAAACTCATCTGCATTTACTATGTCTTTGTTAATAAATGTTGCATATTTGTATTCTGCTTTATTTGTTGCatatttgtattct------gttttatttttcaaactggATTTTTGATGGCGAGATTTATTAAACAAAATCACCTGGGGTCTTACGCCATTATGCATCTTTCTGAAACA-TGTGCGATCATATTCTGAAAAAGCTGCTGTAAGGTGAGGATTTAAGAAAATCTCATTGCAGAAGGCCTGGCATTGGGGAGGCAGCAATGATGCTTGACTCACTCCCACTGTTTAATACAGTACCTGTCAAGTTGCAGATGCTTAGTGTCTGAgagtgagaaaataaatgaatgaatgagaaggAATTTTCTCTGAATATGCTCCCAGTGTATTCCAGACAGACTATGCTCAACGCTCCCCTGTGAATCAGAACAAGGTCTAAGTCAAAGTCTGGACCTCGTAAGATGACATAGGAAAGTCATCACTGAATCTGTGTCAGACAGCAGGAAAGCAGGGGAGACCCAGACAGCCACAAGGGTTGTTGTGCAGGTTATATCGAAAGGTGATTTTAACTGATGACTGGATTGGAGTCCTGTGGTGCCAAGAATGCATAGGTTTAGAAATTTCTAACAACTTTCAATTACCTGTGATTGTGATCATCTAGTGAAAGGTAGCAGGGACCTTAATG-TCATTTGCATTAGTTT-GATATACTGTGCAtcagatttgcatttt

a score=21029
s chr3           147415691 1596 + 160039680 TGTAATTGTG----------TAGTGTGTGTGTCTGTCTTGTTTGTTTTATGATAACA-TCCTCCCCTTattcattcattagctctcatcgaatga-ttactatatccacacggtctgttgaacacttaggatgtggcaataaagtgaatgccctcacccttgcgttcaagaatgtcacactgtcatggcgaagacagacTCCTCGACACATAAGTGCATTGAAAAAGAGATGCAGGGAAATACTTCACAGCAGGGCTTAAGGAAAAAATG-GTCCAATATTCAGCCACACCCTCCCCTTTCCACATGGAAGCCGTTCCTCTTCTTT-CTAACCTGATCTGTCTTCTAAGGTGTGACTCTAAAGATAATTCTTTACCTTAATAAAACCTTAAAATGGTTGCTAGT-GCTGGTAGGAAGGTTTTGATTTATGTCTCTATGAGATATGAAACATTGGGCTTTCCTCAGCACAACATGAAGATTTGCTGCTTATACTTTGCAGAAGGTTCAGCCTTTTAAAATCTTTTCCATTTTATCATTCTGCAGCTTGGAAAAC--AGTGATTCCTCAGTGGTTTGTGAACtctctgtctctgtctctgtctctgtctctgtctctatctctgtctctatctctgtctctatctctgtctctatgtctctctgtctctctgtctctctgtctctctgtctctgtctctgtctctctgtctctgtctctatctctgtctctctgtctctatatctgtctctctgtctctctgtctctgtttctctgtctctgtctctctgcctctctctgttgctgtctctAtgtgtgtgcatatgtgtgggtgcgtctgtgtgtctgtgtgtACAATATTCAGAGAAGACATGAAGCTCTGTGCACACA----GGAAGTGGATTTGGGCATCTGATAC-------------------AAACGACATTGCTGT-TGTGTGATTACATTTTAAG----------------------AATTCTG------TTTAAA------GTGTTGGGGGTTTCGTCTGTAAAAAAAGAACTAGCAACAAGTTCACTTC---CTATTTAGGATTGTCATGAATGCCAAACAAGATAACACAAGCACATAGTTTATTTAAATAAAATCAGCCATCCAGGC-TATGTCTGGTTAAGGTGTGAGAGTCATCTGGCTGCATATGAGACGATTTCAGGCTCTGAAACAACCAGAATGACTTCTGCAGGCCAC-ACAGGGTATGTTTTACATCCATC-ATTTTCTGCAGAGCACCTGACACCTCTTTCCAAAGCCCTGCTCTGC-CCTCCCTGGCACCACTGCACGAGCTCTGATTTCAGTCTCTGCTTCTGTCGATGAATTTGACACTTTCTCTGATAACAGTGCAGGTTCTTCATGA----ACTTCAACTGTGCCACCAAATCCAAGTTGCTTC----CTCAGTTTCCTGA--------AGAAACTGTCAGCCCTGAAGCCATCCTCTCTCCTCTAGCTC-----CCTGGGCCGAAGATCATATGATGTTTCACTCCACATGCCTGGGCATTTCTCCAAGGCAACAGAAACTGGAAACTTTAAAAAAAAAGTCTAGTTTTTTTTTTTTAATAATGGCAAAATTACTGATATTTGCTTTTCAAAATA-GTTCAAGGCCTTGGAGAATAGCAGGATTCTGC-AGGTATATTCACCTAAA
s HiC_scaffold_1 134110968 1435 + 233722169 TGGAATTGTGCGGGTGCTATtattatgtgtgtatgtatattgtGTTTCATGATGACACTTCTCCCTTCATTT-----CTAAATATTGTTAAATAACTTACTGTAGATAGCCACTTTGCTAGACCCATACAATAC----ATATAGAGAGTGTCACAATCTTT-----CAAGAAGTCCCTGCTGTACTGAGGAACAGAGACTCCTGAACCAATTAGTGCAACTGATCTGTGATGTAGTCAAACACTTTCAAGAAGGGCTTAAGAAAAGAATGTATCAAATATTCACCAGCACCTACCACTTGATGCATACAGGTCTTGCTTCTCTTTTGCTAATCCTATCCATTTTCCAGCTAATAACTTTGCAGACAATTTTTTACTTCAGTAAAACCTCAGAACTTCTGCAAGTTAGTGGGGGAGAGATTTTGATTTATGTCTCTAAGAGCTACAAAACATTTTGCTTCCCTCAACATCCCATGAAAATTTGTTACTTGAGCTTCAGAGTGGATTCATCCCTTTtgaatctctttctttttatcataTGGCAATTTGTGAAATGAGATGATTCCGTAAGG---------------------------------------------------------------------------------ATATTTTTTTGT-----------------------------------------------------------------------------------------------------------------------TCTCAGGACAGTTATACAACTGTttatacacataaacacatatata----------------tttatgaacaaTGTTCAGAGAGTGTGTGTAA--ATGGGCACACATCTTTGAAGTAAATATGCACCATGCATACGCATGCTCAGGTTGGTGAAAAATAACACTGCTGTCTGTATCATGATCTATGAGGTAGGAGTGCAGGTATGGTTGGAAAGTCTGATGTTTCTTAAACATTGTGTCTCAGAGCTTTCATTTGT-AAAACAGGACCAGCAATAACTTCCCTTCCTGCTATATAGGAGTGTTGCGAATTTCAAATAGGAGAATATGCGAAAATAGTTTA-TAAGGTAAAATACCCTGTACAAATGCATGTCTGGCCAAGGTGTGAGGACCATCTGGCTGCACGTTAGACTCTCACAGGCTTCGAAACCACAAG-ACGGCTTCTTTAGGAGACTACAGGTTATATTTTACAGTCGCAGATCTCTTCCAAACCACTTTCTAATACTGTCAAAGCCCCAATTCTGTACTTCACTGACCTCATTTTATGTGCTCTAGCTTCTACCT-------------TGAATTCTGTAATTTCTCTGGTAACAATATCTGCTCTCCCTGATAATCTTTCTGTTGAGCTGCTCAGTCTAAGTCACCTTTCTACTAACTCTCTTGATTGGATGTAGAATTCTTCTGTTCTAAAAGTCTTTTTCCTGTTCAGACTCAAGCTCCTG----TAGGATCATATA----TTCACTACTGTCCTGTGCACATATCTATAAATTCATAGATCCTAGAAATGGTTATGTCCAACCCTA----------TTTAACAATGGGAAAATGATGAGCATTTACTTTCCAAAACATGGCTTAGATCTCTGAGGACAGTGGAAGTTTTCAAGGCACATAcacttgaa

a score=80496
s chr3           147422337 4464 + 160039680 [encoded data, 4936 characters]
s HiC_scaffold_1 134122302 4587 + 233722169 [encoded data, 4936 characters]

a score=87485
s chr3           147427668 2914 + 160039680 atctatctTTATGTACCCTTTGTTT-TCTGAGACATCTTGGAAGAAAGCTTTCTGCCTTTCATA-GTTAAGGATTTCAAGAATGCTGCCACACTCAGGCAGTGAATATGCAGCAGATCTGTTCACT-GAACAGA-TGTATCCATTAAGTATATCTAACTATCAAGTATGTCTAATATTTAAACTCACATTT----GATTCCACTGCCTTCAT--AGAAATATAATACACACTGCTATTTTTGAAATGC-----------TAGACTTCAGGTCTGTTCCAGGACTCAGTTTCTCCAGATGAGG-GACAAAAGCAGACTTCCAACTTCCCGGTGTCTCTGATTTC-----ATCCGTTCAATTCTCTCTATTGCTGGTGACGTGAACCCATATCCTAAGTGGCCAGGAAATCAAATTGAAAGCAGGATGAAATTTCATCAAGACTTATTTTCTAACTTAACTAACTGCTCAGATTGATGTAAAATGAATTTGAGCAATTTTTAATGATATGATTCTCATAGCTAAAATGATATTATCGAGAATTTACATTTATAAGTCCTACAAATTCTGTAAGAGTAAGATAATATTTAACCATAATTTTATAAGAGGTACATTTAGAAAGATCCAATCAATGGGATTTTACTTGCAGATATCCAAAGTTAAAAAGAAAAAAAAGTTTGAGCAAGAATATAAAGGCCCTAAACTCCTTATTGCTCCAGTTTAACAAGGAATTAAGAGTAGAGTTCGTCAAAGAAATAATTGAAGACACCCTGGGAAGAGGCGACGGAGGTTTTCAAGTTTATCATGAATCATTCAGTGCCGTTGGCAAAGCCTTGCTGGAACTTATGATATTATAATGAATCTTAAAATGTAATTTAAGTTTTCACTAAGGACTTAATTCTGATTCTTAAGGGGAATTTTAT-CCGAGAAAGGACTGCACGCCTGAGTCCCGAGAGACACATTCTGTTGATCATGATAATG--TTTTCCCTGAAGGAGAAAAGAAAGGTAAGCCGGTGT-TTTGAACCCAGATGAGAAGCATT-------------CCACCCATTTCCTTTGTATTGAGCAGGGGTAAACCAAGGAGAGGACATGGAATCTGTGCCTCTTGGGGGGAagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaatgagagagagagagagagagagagagagagaatgagagagagTTAACTGACAGTAGCTGCGTTTGTTCGGGCC------------TTCTCTCTGAAATCTCTATC-AGTGCTTCTAAATGGCATAGGCGTGGGCATCGGTGATGGCTCAGTAGATCTAAACCTGTCGGAAAATCTGAGCAATTGGAAAATGTTTGTGCTCGCTCACCTCCTGACAAAGGAAACAATAACTAACACAGTGGGAAGCTGCAGCTATCTTCTGACACATTATGTTTCTAGCCCCAAAATGTCACCTGCAACCCACAGAAGGGAGATGAATGAAAACCAGCAGTGGCCCTGAAATACACCAAAGGAGAAAAAAAAATCCAGCTGTAAAATCGACTGAGATTTCTTTAAAGCCCAACACGCTGTTGACGGCGGACTTTCGCCGAGTCTG-AGCTTGTATTCTCTTGTAAGGTCAAGGGTCTTCTAATTGACCAGGCAGGGGAACTTAAGTCTCTAATTTGAGGAGTAACTGCAGCATGTGACTTCTTTGCAGGAAGTCCCGAGAGAGAAAAGCTA-GGTAAATCTTAGGATGGTTTTC----------ACATGAAAATGCAAAGATTCC-GAGTGTATAATGTTTTAAACAGAGGTGACCCAGGAATTCAC----------CTTGTCCTTTGGAGTC-GATTCTACACATTTTACAGGGAGTGTCCTGTGGTATTAGCAGGAGGATTCCTTAGAGCTTGTATAGGTTGAATGCAGGTGATGAGGAGGTATGATTTATTATTTATTATGATTTATTAACTTCACACTAACATTCTTCTTAGAACTTTCCCAAATAGCTAGTTTTGGAAATCACGCGATCTTTCTCAAATATAAATATTACTTAATTAACCAAATTAAAAACATATGTTTATTAAATCTGAGGTGGGGCTGATGGAGGTGGGGGAGGGTAGTTGAAGGATCATCAGGGATGGGAGAGGCACGCCAGAGGAGTGAAAACACATTTTATGTATGGATTAAAATTCTGCAAAGAGACTGACGAGCATATGATTTAAAAATCTTAGATTATTTGAGCTAATGACATAACTGTGGGACTCTTTAGAGTGAAGTTACTAGCAATCAGGAAATAAAAACCATAATTGAATTTAATGTATCTGCCAGACCATAGAATGTCTCGTTTCTCCTAGTTTCCCATATTCCTGCTTGGTTTGTTTTGTTCTGGCAGATATTGAAAACGGTGATATCT-TCTGAACAAATACTGAACAAAAGTAA-----CTTAAAATTTGTTTATTTGTGACAGTGCCTTATGTGACCCAACTGAATCCAACTCATTAAAAAATTTGATCCTCCTGCCCCTACCTTCCAGGGCAGAGAAGCACCCTAGGCCCAACAGATGCCACATAGAATGCCAACTTATATTTACACTTTTTATTTTTCTACTTTGAATTACCACAAACCAAGTTTCATACCTGATTTCCCATTTCAGAAAGAGGATGCTACTGCATTGGGTTATTGCTTAATCATGCATTATTATCTTCTCAA----------------TAATATTCACAACAAACTCACAGACAACT-GAGGTCACCCTGT-AAGGTTGTAAAGATGATTTACAATCAGTTGGGAAGGTATAATATGA------------AGATTCAAAGGCGAGGAGCTAGCAAGAAGAGGCTTTATCC--------TACCTGGTAAGGTCATCTATTATATTCATTTGAACGGGAGCATTCCattttaaaattaaataaaatatGAGATAGGAAATTATATAGGCACcttggtttcatttcctgttgttgggataa
s HiC_scaffold_1 134126893 2611 + 233722169 atatatttttatataactacTTTTCATCTTAGGCATTTTAGAAGATAGatatctctttttcctttgttgaGAATATAAATCTCAGTAACTTACTCAAGATGTAATTA---AGTAGATACCTTGACTTGTACAAACTGTAGTTACTAGGCA------------------GTTTAGTGTTTAAGGCTACATTTCTTTAACTCCAAAGTCCAAATTAAAAAGTAGGACCCACAAAACCCTTAATAGAATGTGTAACCATAGATAGTCCTCAGGTTT--TGCAGGGCTCAGTTACCCCATATGAGAAGACAAGTT---ACTTCGAAATTC----TGCACTCGCTTTCTACCTATTCATACAATTCTCATTATGGCCAGTGGCCTGCATTTGTATTCTGAGTAACCAGGAA-TCAAAGGGAGACCAGTATGGAATTTCATCAAGATTT-CTTTCTAACTGAATTAACCGTTCAGGGTAAAGTAAAATGAGtttgagaaaattttaataatataatttttctaactaAAATGATATTACAGACATTTTACA------AGTCATATAAATTCTGTAGGAGTAAGATAATATTTAACTATAACTTTATAAGAGGTACATATAAAAAGATCCAATCAATGATATTTTACTTGCAGATATTctaagttaaaaagaaaa----gtttgaggAAGAATATAAAGGCCCTAAAACCTTTATTACTTTAGTTCAACAAGGAATCAAGAGCAGAGTTCGTCAAAGAAATAATTGAAGACACCCTGGGAGGAGGCTACTAAGGTTTTCAAGTTTATCATAAATCATTCAACGCCTTTGGCAAAGCCTTGCTGGAACTTATGATATTATAATGAATATTATAATGTAATTTAAGTTTTCACTAAGGACTTAATTCTGCTTCTGATGGGAATTTTTTTCCCAATAAAGGACTGCAGGCCTGAATCCCAAGAGACAGACTGTGTTGATCATAATAATGCTTTTTGCCTGTAG-----CAGAAAGGTAAGCTGCTGCGTTTGAGCCCAAA-GAGAAGCATTTTTTAGTTTCTccccttctatttcttttatactGAGCAGGCGTAAACCAAGGAGAGGACGTGAAATCTATGCCTCATCTGGAAAAAGGA------------------------------------------------------------------------------------------------------------------------TAAATGAGAGTGCCTGTATTTGTATGGAACTGAACTTAGAAATCGCCTCTGAAATCTCTATCAAGTGTTTCTAAATGGTATAGGCGGGTGAATCAGTGATGGCTCAGTAGATCTAAACCTGTCTGAAAATCAGAGCAATTGGAAAATGTTTGTGCTCACTCACCTCCCGACAAAGGAAACAATAACTAGCACAGTAGG-AGTTGCAGCTATCTTCTGACACATTATGTTTCCAGCCCCAAAATGTCACCTGAAACCCGC-GAATGGAGATGAATGAAAACCAGCAGTAGTCCTGAAACatgccaaaagag-aaaaaagccccGGCTGCAAAAATGGCC-AGGGTTCTTCAAAGTCCAA-AAGCTGTTGAC-TCAGACCTTTGCAAAGTCAATCACATGTATTCTCTGCCAAGGCCAA-GGTCCTATAATTGACCGGGAAGGGAAACTTAAATCTCTAATTTGAGCTGTAACTGACACATGTGCATTCTTTGCAAGAAGCCCATAGAGAGAAAAGCTACAGTAAACTCtagaatgattttctttttctgctatttGGAATTGTAAAGACTCCGGAGCATATACTGTTTGAAGAAAAAG-GGCCCAGGAGCTTCCAGAATTCAAACTTACCCTGCTAAGACTGATTTTACACATTTTACATCGAGTACCCTGTGGCACTGACAAAAGAATTCTTTAGAACTTGTTCAGATGGAGGACAGATGATGAG-----------------TGAAGATGAATTATTAACTGTACAGTGATA-ACTTCTCAGGACTTCTTCAAATCATTAGTTTGGGACACAACatgatctttcaaaaatataaatatttctttgttaatcAAGTT-AGAATACACATTCATTAGA-----------------------------------------AACcaatcaggaaatgaga------------aaatga------------------gatttatcttttgtaa----------------gtttttaaaatattttaggtc-CTTAATCCCATAGGATACTTG-GCGACTTTTCTGAACAAGTATAGT-GCAATCTTGA---AAAAAATGTACTGGAGTATAATGTATGTGTCAGGCCtcagaattttccatttttcctagtTTCCTATTTTCATTGATAGTTTGCTTTGAATTAGTCAAGGCTGAAAACTTGGCTATTTCTCCACAGACACACAGAGTAATAATAACATCTCTCAAGATCCG---AGATGTTGTAGTGTTTT--------------------------------------------------------------CATAGGA-----TTAGGTGTGACTGAATTGATATAAAACACCAA------------------ATTTTTCTA------------------------------CTGACTTTCCATTTCAAAAAGGAAAGGATAGTGccttaagttatt-tttaattat-tgttctTACTGTTTGAAATAATTACTGTGCTTTCAATATTAACAACAACCTGAGAGTCAAATCGAAGTCACTTTCTGGAGATTGTACTATAGACTT--CATTAACTGGGAAAGCACCACTCGAGAGTAAACAATGGGTTTCAAAGATGAGGAGCCAG-AAGAAGAGAAAGTAGCCACACAGAACATGTAGAGGGATGGTTCGTGCTGCTCATGCCAATAGGAGCACTGCAact--------------acagaaaagagaaaaatata-atgcatcttaggaatattttatat--ttgtgataA

a score=34143
s chr3           147430969 1153 + 160039680 CTTAGGAGCTTTTCATATTTGTAATTGCTGCATTATTGTCTTTTTTAAAAAGAACACTT--------AGGTATAATTTCTCATATCTTTCTTTTTTATAGGTATAAGATTTCAGTAAAGGAAAGTCAACCTCATCACAGAGTGTGGATGCTGGTGGATTACGTGCACAGACCAACCTGTGTCAGCCTTTGTTGATATGTTCGGTATGATTGGTATGATTTAGGTGCTAATAGAATAATTTAACATATATCGAGAGTGTGCAATATTAAGTTAGGTAAGCAGACCCAGTTGTATCCCATCACTGTTGTATGATTAATAATTGGACCAGCAATGAACTTTCTCTGATTTTCTACGCACGTGGAGCTGCCAGAGACCAGTAACTGTTCCATGATTATTAATAAAACAACTCTTCTCAAAAGCGAGTCTTCCCTGACTTTCCTTTCCCTCTCACTTGAGATCTCTCTGGCAGGAAACATGCCATGATATATCAAGCACTCAGCAGAAATTCATAGGAAACATTACACATTTACAACCCCCTTTTA-TTCTGTAAAACTTCATTTTAGTCATGTAGGCATTATGTTATACTCTGATATTTTAGCAGTAGTTGGCACAATATATTACCAGAGAAATATGTTAGAAATGGAAAAGGAACAAGGCTTTGGATGATTAAGTTATATTAACAGCTTTCTCAGGCTTTATTT--AAAAATTGATACAATAAATGTCACtttaaatattttataatatatttaatCTAGAGGAGCAGGGGTTTTACAATTTATTATCGAACATAGTATTACTTAACAAAGTTTCTTGTAGA--AAATTTATTAGTGTGTAGAATAAAGAAGAATAAATGTGTGTGTCCCGCTTTTTTGCTACATGTAAAATTGTTTGGTACATTAaaataaataaataaataaataaatacatacatacatacatacatacatGTGATTTGGATGACAGTAGACTAATACTACACATATAAGGAATGTGTAAATTATTTGGTGTTTCTGATTTTAGTTTTTGACCTAACATGCACTAATCAAATTAGTAACT----------------------GATTTTGTGAGGTCCTAGTTCATAAGGGATTTAAACCTTTCT-CTTGGGATGTTGACTGCTTCCAGATTATGCAACAAAACAAACTAATTAATTGGATCTATCCATC
s HiC_scaffold_1 134129477 1056 + 233722169 cttaggaatattttatatttgtgat-----aAGTATTGT------TAGCATGGACAATTCTACAGCTATGGCTAAACTTTTAGATCTTTAGCTTCTAAGGTTCTaagatttcatttgaaaaatttcagcATGATGGTGCAATTTGGATGTTGGTGAAATACGTGCACAGAC-------------------------TGCTGGATATA-----TACTTTTTAGCTA--AGAAGAAGCATT---------------------AATATTATTCTAGGTGAATAGATTCCACTGCTTCTTATAACTG------GATCAAAAAataggc------------ttttaaatttttttcaacagTTGGAGTTGTCAGAGCTCAATAACTGTCCCATGATTAATAATAAAGTGACTCTTCTCAGCAGTGAAATTACACTGACTTTATTTTTCCAAGCTCTTGAAATCCCTCTGGCAGGAAAACCAACATGGTATATCAAGTGCTTAACtgaaatgcatataaaatattacaCATTTACAACTTCCCCTTACCTCTACAAAAAGTCATTTTAGTCCTATAGgcattattt-----tttgatattttagtaGTCACAGACAAAATATATTATTGGAGAAATGTGCCA------GAAAAGGAACATGGTTTTAGACTATTAAGTTATATTAGCAGCTTTTggtagctttattttaaaaaattgatgcaataaatgtcattttaaatattttatcttatatttAACATGGCAAAGTAGTGCTTTGACAATTTATTATTAGACATAATGTTTCTTAATGAGATTTTTTATACATGAAATTCATTAGTGTTTAGGACAAAGAATAACAAGTGAATTTATGCCACTATATTTCCAAGTTTATGATTTGTTGGTGTACTAA---AAGTAAATGA--------------------------------GTGTGGCTTGTATATTACTAAATTAATTCTATGTACATTATGAAAATATGAACTATTtaattttgctaatttta-tttttgacataataTGTACTAATTATATTTGTATCGATGAGATCATTCCTCATATTTAAATCATGTGAGATGTTTGTTTATAATGAAtttcaatctttttgttttggattttgaatgCCTGTAGACAATG----AAAAAAGATTGatcaattctttctttccttc

a score=13953
s chr3           147433939 2287 + 160039680 CCAAATTTTGGCAGAAGGCTACTAT--GCAGAACTTGTAGAATCTACTTATTCATTCTTTGTATAAAT-AAACACACCAAGGTACTAGTGCAAAATAATAAGAGCC------CATGACTCAGGTAAAAAATTCTAAAAAGCCTTATACAAAGTTCCTCAATGGACCATTGGATATATTGAATAC-AATCACCCATCTACCTTACCTCCTTGAT---GTCCTACTAGATAAACTTCATTTATTTCTTTCCTGTCTCCAGTTTCCTCTCTTCTCTTCTTTTGTGTTACAGCCAACAATAAATCATATGCAAGCG-TTTTCTCAGACTCCTTTGTAg-tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGGGGGTTAACAGTG-GAGAAAAAGAGATACATAGGAAGCCACTTCAAGAAATATAAAAGACAATAGATAGATAAAATACAGATCTATCAATAA-AGTAAAGGCAGATAC--TACTCCATCAGAAGATCTGACAGAAAAGA--ATGAAGCACAG--CAATTGCGGGGAAAACAATGA-AAGCAGGTGGGACTGTACATAAAAAGGGTTTGTAAAAGTTTACCTGGCACAATTGATCAGCAGCAGACCACCAAGCATCTCTGGAGAT-----AATGGGAAAGAGTA------ACAACAATGAAGCAAAGGCCACCGAACCAGACATCATAAAGGCTTTTAGTATCTTTGAGGGATATGTCACATCATCTCTGGGGTATCATTTGTAAATAAGGATGATGATGCTGACCTCCTATTGTCTTGGAATGTATTCAAGGGAATGTAGCACCTAGGTGGAATAAGCCTACTCTTACTCCTTCTCTATATCTTCTGTGTTTATATCCATATCTGTATTTCCATCTGTATTTATCTGTTCTTTATCAGTTTATATAGTTATtatctatctatctatctatctatctatctatctatctatctatctattatctatctatctatcatctatctatctatcatctatctatctatctatcatctatctatctatctatctatctatctatctatgtatcatctgtccgtctattatctatcatctatctTCAATCTGTTGTTTACTTAGCTAAAGACCTACCCATTATTTCTGTGTTAGTTATCATCAGGATCTATCTACATTGACTTCTTCATCCTTTCCATTCCCATCAGACCTTGCTGACACACAGTTAGCTGTTGGCTTTAGCTACAACACAAACAACATGGAAAAGAAT--TGGAGAATCTGTAAGCCAGATTCTGCCCTTTGCTCCATTTTCTTACAGTTTCTTCATCC--TCT-TATACATCTTCACCTCTTGCCTGAAGTCACTTTGTTGTAAGCAAAGCATTTCCTGATTGC--TCATGGAGGGAGGGAAGGGTCTTCATT-TGCTTTTTCTCTAAAGGAGCTTGT-GAAACTCATGGAGAAATTACCCTCTCATGTTGTATTAGAAGAAAGAAACAC-CCTACCTTGTTATTTCTTGGTGTGTGTGTTCGTTTTCATTGCTGTTGTTTTAGAAGAGTAACATTCAGGCAACAAACGAGAGTGTAAATCACCACCATAAACAACAACAACtgttggcatcaggacctcccaaacctatgacataacgtgggcaacagcgcgaccggcagcatattcccagaatccacttggctcacctcccaccttacttgtgttatgtcattttccatataaataaggagaatgccctcccttgctctcttctccccctcttctcttgtctctctctcccaataaaaactcttccatatggaactgtctgggcttagtatgctgttgagatgcgacccacTAAAACATCAACAATACCACAAACAAGTACCTGTGAATAAACTATTTTCATAAATTGATAGTGTATAAATTACGTAAAATCTTCTAGAACAACTAAATTTATAATCTGATAATATTTTCTGTTTCATATATTGGCTACACATTTGTATATGATCAATTCACTACTGGTTGATATTATAAATTCTATTTCTTCTAGAATATTTTTAGTCTACTTATTAACTTGTATGATAGGTGATGTTTAATTTCATAGAGTCAAAGGGATTGTGATAGTTGTGTCTTAGAAGACATTCCTACCCAGCTGCCCCTCTCCCCAATGTTAAAATATTT-------TTTAAACCAAGATAATTTTGGGCTCTCATTCATTCATCCCTCATCAAACATCAGAGTATGTCTTGTACAGTATCACACA--------ACAAGAACTT--GAGTCTTGGAATTCATGGAACCTAGGGTTTTAGAGTTAAAACATTA-AAAGTGGTTGTGAATGTATTGTTCCAGAAAA
s HiC_scaffold_1 134131499 1783 + 233722169 CCAACTTTTGCCACAGGACTGCTCTCTGTGAAACATAGA-AATCTACTAGACTGTTCTATACCCAAGTTAACCACACCCGGAGTCCAGTCTTAAATCATAGGAGACAGGAGTTATAACTCAGGCAAACGATTCTGAAATATATTGCATAAGGTTCCTCAGAGGGTCTCTAACCACACTGAGCTCTAATTATTCACAGGCCTTGCTGCCTTAGTAGTGAACTGCTACCTGAGCTtcgtttgtttccttttt-----cagtcttcc-------------tagcattatttccaaaaataaat-----gcatgctCTTTTCCCAAGTTTGTGTctatctgtctgcctgtctgtgtgT-TATGTATGTATGTGGCAGAGTGTGAAAGAatgcaagaaacagaaacaatggAGATGTTTTGAAGAAAAGTAAACCAGGA-------ATGGGGTACAAGATTCTCAAGAGCAGGAGAAGCATTTGTGGTATTTCAGCTGAGACCTGGACAAAAAAAAGCATGGAGCACGTGCCTATTCTGTGAAAGAGCATAACAGGCAGGTGG-AGTGTAAGTGTAAAGATCTTATGAATGTTTGCTTGGTACAACTGAGGAATAG---------AAGGGTGGCTTAAGATGAGTGAATGaagaaaagcataaaagaaaGTAACCATACAGAGGCAATTGGGCCAGATGGAATGGAAGATCCTA-TGTC-----AGGATGTTTAACATC---TTTGGGATCTCAATTGTAAATGAGGTTAATAGAACAAACCTCACATAGTCTGTGAGAGTATTCAGCAGAATGCGATGCCTAGGCACAACAAGTC-----------------------------------------------------------------------------------------TGTTATCCATTTATC--TTTAGCTACATCTGTACCTTTCTATCTATCTGTCACTAATCTAGC-ATCAGC-ATCTACCTAT-atcttactgtttaattttccTATGCTTTTCCATTT-CCTA-----------------CATTGGTGTGGC--------ACCATAAA-----ACTCTGCTATGCACTT-----------TGACCA-------TACGGTAACAGTCAAAAGGAACT-----------------------------------------------------AGAGAGTTG-----------------AAAGACTTCAGGGAGAGGGACCATTACTAAAGTACATGTCATATTGCACTATTTGCTCCTTTCTCATTCTGTCACTCCCTTCAGTCTGCAGAGATCTG---TTTATACCTGAAATCATTGTCCTTCAGGGAAAAC-TTACACGATGGTCATTACATTAGAGGGGTATAGTCTTAGTGATGTACTTTCTCTGAAAGAGTTTATAAAAACTTGTAGGGTTTTGACCCTATCATGTGTGATTAGTAGCAGGAAGGGCTTTTAGTTTGTTAAATATTGCTTTAGGTGGTTCTTTT-------------------------CATTCTGGCTATGAAGAATAGTATGAGTCACCAgtattagacaaaagaa---------------------aaactcatg-tataa-------------------------------------------------------------------attatg----------tataaatgtataaa------ttactTG------------CCACTTCTGGGGTAGCTCACTTTTAGC--------------------------------------CTATTGTGAtgctgc------------------------------------------------ttttcat---tttata--------------------cttttgg-------------CTAATCAAACACCAGTTCATTTT---------------------GTATCAGATGAGTTTACCTCTGTTCAGTACTATGAATTTTACTGTTTATAGCATATATGGAATTGACTCACTAATTTATTTTCCAGgtgatgtttaattttatagAGTTATAGTGATTGTTATGACTGTGACTCAGAAGATATCCATATCT--TTTCACCTCTCCC---------AGTATTTTGAtgactttataataaaaaagtttgtacttttcattctttatt---tcaacAAGTACTAAGGTATGTCTGGTATGATTTCATATACTGTGAATATAATAGTTTAGAAGAATTGAGTTTCATGGAGCTTAAAGACTTAGGGTGAGGACATTGTAAAGTAGTTGTGAATGTGTTGTCCCTGCAAA

a score=123333
s chr3           147441004 7347 + 160039680 [encoded data, 8457 characters]
s HiC_scaffold_1 134134031 7721 + 233722169 [encoded data, 8457 characters]

a score=75387
s chr3           147452155 1196 + 160039680 AGAAAAAAGGAGTGTCGTAAGCTGCCCTCAGGAGAATCCAAAGCCAT--CCTGAGGAACATTTTGCATGTTTTACAGAATTCT-GCCAGAATTCCCTAATAAGAAGAAAACTCAGGCCATCTG-AGGCCTATGCTTAAACGACAAACATCATCCCATAATGAGGAGCTGCTAACTCCATTAATGCAATGGGGGAGGGGTTGTTCTCTTTCATTTCCTGGCTCATCTCTTGCTTCACGCTTTCTGGGTCTCTGGCACTGCTTTCTACCATAAGTCAGAAATGAATTTTTTAAAATAAGCACTTGTACTTTGAACCATAAAACAAAATCCGAGGCAGAAATCAGAGGAAGACGGTAAATTACTTTTAGTGCTCTGCAAAGAAACTTTCACTTGGCTATTTCCTCTTGTTTTGAACCTCTGAAAAATCAATACAGAAACATATCATATTCTGAAGGCAGGTCAACTGTGCACTAGGTGTTTTTAACAGTTGGCTTTGAAGGGGATACTTATGCCCCCTTGACATGAATCTACAGTTCTTCGCACTAAGTGTCCCCATGAAACTACATTTTTGCTCCGGCTATCCATCTCAATGGTTATTACTTTTTACTGTTCCAGGCCTCTATCTTCTATTATGGATTCACTGATAGATCAATATGACAGAGGCAAGAT-AAAAGTCAGTTAGCTGTACATGTCTATTATGAGCCTGAAAATCCAGACACACATTTCTCCTGACAGAAGCCAGGCACATAACTGACTCATTACGTGTCTGGGTGCTTTTCTCGTCCTTTCTGTACAAACGCACATTTCTGGACATGTTTCTTAATTTTGAGGTCCTCATAGCTTGTCAGGGAGTTAGGAGTGAGTGGTTCCCTCAGGGAGAGAGGGATTTTAAAATACAATCTTTACTTTTGAAGGGAGAGAACAAAGTGTATTTGCTGCTACTCCAAGGCAGTAAAATGGAATGCTGACACACTCAGTGTCTAAACCACAGGCAAGTGGACTGT-AAACCAGGCGGTGGTTCAAAGTAAAGGGAGGAGTCCTTGCAGTACCCTAGTGGGTAATGGGAAGGAGGAAAGGGGCTTTGGGTTGGTTGGAAACCTTGAGTTCCCTCTGGAGTTGATCACCTCAGCCATTTATCACTCCCCATTTTGAGAGAGAAAAATAAAG---TGTCAAACATTTATGCTAACTTCCACTAGAAGCTC
s HiC_scaffold_1 134143964 1194 + 233722169 aaaaagatgCAATTTCAGAAACTAAACACAGATGAATTCCAAGCCAGGGCATAGAGAACAT---ACACATTCTCCAGTGTCTTCTTCAGAATACCCTGATAATGGTAAAA-TCTGCCCATCAGTAGGCCTGTGCTTACAGGACAAATTTCATCATGTAATGACTAACCACTAACTGCATTAATGCAGTTGGGAGggggttgtttggtttcatttcGTGGCTCATTTCTCGCTCTACACTTCCTTGGTCTCCAGTGCTGCTTTCTACCATAAgttagaaatgatttttttaaaataagcacttGTACTTTGAACCATAAAACAAAATCTGAAGCTGAAATCAAAGGAAAGAGGTAAATTACTTTTAGTGCTCTGCAAAGAAACTTTCACTTGgctatttcctgttgttttgaaacTCT-AAAAATCAATACGGAAACATATCATATTCTGAAGGCAGGTCACCTGTGCACTGGGTGTTTTTAACAGTTGACTTTGAAGGGGATACTTATGCCCCCTTGACATGAATCTACAGTTCTTTGCACTGAATGTCCCCATGAAACTACATTTTTGTTCAGGGTATCTATCACAATGGTTATTACTTTTCCCTGTTCTAGGCTCCTATCTTCTATTATAGATTCACTGGTAGATCAATATGACAGAAGCAAGATAAAAAGTCAGTTAGCTGTACATGTCTATTAGGAGCCTAAAAATTCAGACACACATTTCTCCTGACAGAAGCCAGGCAAGTAACAGAGCTGTTACGTGTCTGGATGGTTTTCTAGTTCTTTCTGTACAAACTCACATTTCTGGAcatctttcttaattttgaggtCCTCATGGCCTGTCAGGGAGTAAAAAGTGAGTGCTTCCCTAGGG----gagtgattttaaaatacaatcttCACTTTTGAAAGGAGAGAACAAAACACATTTGCTGCTACACTAAGGCAGTAAAAAGGAATGCTGACACGCTCAGTTTCTAAACCACAGACAAGCGGACTGTAAAACCAAGTGATGGCTCAAAGTGAAGGGGAAAATCTTTGCTGTCCTCTTGTGGCTATAGGGAAtgagaaaaatagctttgagttGGTTGAAAACCTCAGGTTCCCTCTGGGGTTCATCACTTCAGCTATTAATTAGCGACCATTTCAAGAAAG--AAGTGAAGATCTGCCAAAAATGTAAGCTACTGTCTACTCGATGGTC

a score=80335
s chr3           147454615 2118 + 160039680 TCAGCTCCCAG-AGAGTGGCTAGTTGTTGGCTGATCTCCTAGATTAGTCTTAATGTCTTAATGGAACAATTGAATTCTCATTCATGTATCTCTAACCCACTCACATAAAAAGCCAGAAATGTCCTTC-CTAGA---GGCCAGTTAGCCTAAATAGACATGGCAACCTGTAAGGGCTTGGGTCTAATTCTGCTTTTGTTCCCTAGCTCTGTCCACTGACTAGGCAAGACATGTGACAGAACTCATAAGG---AAGGGACAAAGGACACACTGCTTGGTGTGAA---CAGTTGGTTCACAT---AAAAGGCACAGATGTCATGACAGGTGAGGACTGAAG--------GCTATT-------------------CACAGA-----ATTAGTGCACCACAGAGAAGTGGA--AGGGAATGGATGG-TAACTGTTGCT-TCATGGTGTC----ACTGG-------CGCTTCCAG--TCATCTGTGTGAAGCCCAGCTTCATTAGCTTCCTCCTACGGGTAACTACTCTCTCAGAAACAGCAATTCTAG---------TTTTACAAGAGAAAAAAAAAAAGATGTTTACATGGTAAATGAAAAAACTCCATTGTTTGAAAATAGCTCCAGTGTCATGGTGAGATTTCAGGACAGACCTAGATCCAGGGGCGGCAGGTACTCTAACATACTTGGTAAAGTGCTTAGGACTGGAATGT-TGATATCCTTTAAGTATTACTAAATGTCATATCATGTG--TTAGGCAAAAAGAATAGAGT----TGTAG-CGCTGCAGCTCTAAATGAAA--TTGCTTCTGT-------TTGTATAGAATCTGCAG-TGTGGATGCCTACACACTACAGCTCAATACCAAG-AAAGGACAC---------ACAGGCTCCACGGTCCATTAAGCTTCAGGTTTGCCTTGATGTGGGCCTCTCTGATGTATTACAATGATACCCTATTTTTGTTGACTCAGTTACTCTGTCAGCAAAACCAAACATCTTGGCCTGTGGCCCAGCCTCGAGCTGTCTATGGAGGATATGTTTTTGCCGTTACCACCATGACAGTAATGAGCAACTGGCATTAGTTTGATTTGCATAATTGTGTGCTTCCAACTCTGGGTCTATGTCAGTAGGAGACAACTTATTGTGATGATATCCACAGCATATTATCTGTTCTGTGCAATCAGCATTTATTTATGTAAATTCTATCATTACAAGGGGTCATTTTCTAACATTCTACCATGAAATTACATTCTCAGCCAATAAGCAGCAAGAAAAAAACCCTAGAAAGAGAGCTGGGCATATTTTGTCATTCATAGCTGTTGGTCAAAGAGGTGGAAGGGATATTTGTGGTGGCTGCCTGCTTATTTGCTTGTTTAGGTGAGTTTCTGTTAAAGATTGACAAGCAAGATGGCAATCGGGCAGTCTGTCTATCAGATTTGGAGTGAATGCTATTAAACAGA--CAGCTCTCCTCTTATTCGCAAACCACTATG-------CACAAG-TTCCCTCCCTATTCTGAGATTTCCTTAAAATAACTAAATAACT-ATGGTCTAAAAATTGTTTTGTGTTTTTGTAGATGGTGAGTGAAGATTTTCTCTGATAAACA--AAAATTCTTTAACTAAT----ACAAGAGACGAGAAGTTAGAATATCTAGGTGGAATATTCTATTTGTCCAAGTACCTGAGAAAGCAGAAAGGAACCGAGATGAACCTGAGATTTAACAGGCCGAGTCTCACAACCCTGCTCAG-AAAATACAGTCCAGGTTGGCTCTATTATCTGTCTCATCTTTCCAGGCAGATGAGCCTGCTAGGCTCTGTGTAACTAGAACGGTAATTTATGCATTTCTTTGATAGTTATCTCTAGTTAAGCACAAAGGGATGTCAGCATTTAACCCCACTTCAAGACATGACAATGTGGAAAAAA---GGAACATAAAGGAAAAAAAAAAACCCAGCAGCCAACCACTTAAGTCAAGTTGACACCTGTCAAAAGGAGCCCTTACTAAGAGGAGGGTAATTAGGATATTACTCTGTTGTGAGAGCGTCGTTCTCAGCCTGCTATGTATTGCTCTTCAGGCTGGTTGGGAAAGAGTAAGATGTGAGAAAAAT----AAAAATGAATCaaagaaacaagagaaaaaaaaaaaaaaagaaaaaagaaCCCAGAAATAACATTTCGCACTCCAGTAAATTTCTAATTCAGACTTGTTTGGAAGGTggctgag
s HiC_scaffold_1 134148166 2170 + 233722169 TCAACTCTTGGGAGATTGGCAGGTTGTTGACTGACTTCACATG-----------GCCTCAACAAAACAACTCAGCTTTCCTCTTTGT--CTCATGTCCTCTTTCATTCAAAACCAGGCAAGTTTTTTTCTAGATATGGCTTAGTGGTATATGCAGATGTAGCAATGGGAAAA----------CACTTCTGCTTCAGAAACCGCAGTTTATGTA-TCATTGGCCAAGGTAAATCTCATGACCGATGAGACCCAAGAGGCAAGGAGTGTATTTCTTGGTGTGAAGAACAGCAAAGTCTTGTGGCAAAGGAAAGAGGTGCCAGGAAGGGTGAAGCCCTGGGTTATTTGTGCCATTAGCCCTTATCAGtccagcacacagacacacactgacATTCAAAAGAGAAGTGAACTAAATGGTAGATGGGTGACCTTTGCTGTTCTGATGTCCTTCACTAGGCTACACCAGTTTCAGCTTTGCCTGTGTGAAAAACAGATCCATTAGCTACTCTCTAGGGTAAAACGCTTTCCTCAAAATAggtattttatgatttctttttttttaaaaggaaaca-----------tgCATGACAAATGAACA--TTATATTGTGTGAAAAT-TTTCTAGTGCCATGAGGAGAACTCAGTCCAAACTCAGATCAAACAACAGTAGATACTCTGAAATACTCTGGAAAGTGTTTAAACTTGGGATGTGTGACATTGTTTAAGTATTTATAAATGTCACATCATTTGATTTAAGAAAAGCTAATAGAATGTCTTGCAGATATTTCAGATCTACAAAAAAATTTGCTTCTGTAATCTGTTTCTGTAGAACCAGCAACTGTGGCAGCAGACGTACTATGGGTCAATACCAGGCAAAGGACGCTCCGCACAGACAGGATCCACAGTCCATTAAGCTTCAGGTCTGCCTTGATACGGATC-CTCTGATGTATTACTATTAGATCCTATTTTTGTTGACTCAGTTACTATGTCAGCAAAACCAAACCTTTTGGCTTGTGGCCCAGCTTCGAGCTGTCTATGGAGGATATGCTTTTGCCTTTACCACCATGACAGTAATGAGCAACTGGCATTAGTTTGATTTGCATAATTGTGTGCTTCTAACTTAGACTCTGTGTCAGTAGGAGACAACTTATTGTGATGATACCCATAGCATATTATCTGTTTTGTGCTATCagcatttatttatgtaaattcCATCATTACAAGGGGTCATTTTCCAACCTTCTACCATAAAATCACATTCTCTGCCAATAAGAGGGAAG-AAAACACCATAGGAGAAGAGCTGGGCATAGTTTGTCATTCAGGGTTATTGGTCAAGGAGGTGGGGAGAGAGTTTGTGATGGCTGCTTGTTCATTTGCTTTCCTAGGTGAGTTTACTTTAAGGACTGAAAGGCAACATGACAGTCTGATAGCCAGTTCTTCAGATTTAGAAGTAATGCCGTCAAGCGGACTCATCCCCTTTCTCCCTCACAAACTCATATACATATACCACAAGCTTGCTTGGCTCATCCAAGATTTGCTTTAA------GAATAATTCATGGTCTAAAAAGTA-TTTGTGTTCCC-TAAATGATAAATGAAAGTTTTCTTTGATAAGAAGCAGGATTCTGTAATTTATTCACACAAGAGCCAAAAAGATAGAATGAATAACTAGAGTATT---------GAAGTACCTGAAATTACAGAGCAGAACCACATAGAAGCTGACAATTCATAGACCAAACTTCCCAATTCTGCTCAGAAAAATATAGCCCAGATTGATTGTA-CATCCATCCTGTCTTTAAAGGCAGATGAGCCAGTTAAGCACAGTGTAAGTGGAGCTGTAATGTATGCATTCCTTTGATAGTTATCACTAGTTAAGCACAAAGGGATGTCAGCATTTAACCTTACTTCAAGACATGACaatgtagaaaaaaaagagaaaagaaagaaaaaaaaaaatcccagcagcCTACAATTTAAGTCTTGTTGACACATGTCAAAAGGAACCTTTGCTAAGAAGAAGATAATGAGGATATTACCCTGTGGTGAGCTCattg-tctcagcctcccccatAGTATACTTTGGgctggtcagagaaaagaaagatgggagaaaaatttaaaaaagagaaacaaaaaatctaTGACTtctacaacaaaaagaaaa--------------cacattttacatTTCAACAAACTGATGTTTGAGAATTGTCTTTGAAGAGACTCAG

a score=122382
s chr3           147457241 4041 + 160039680 [encoded data, 4305 characters]
s HiC_scaffold_1 134150315 4165 + 233722169 [encoded data, 4305 characters]

a score=62018
s chr3           147464282 2420 + 160039680 TGCTGTTTTTGTAGAAGGTGAAGTTACAGGAAGAGTTCGCACCCAGGTTTA-CCCCTTAAAGCTACTTGCCCTCTCA-CTG-------TCCTGATGTAAGACCCAGGCCTTATGTGTGAGTTTGGGGCTTCCAAGGCATGGTTACTTAGCCTCCTAGTTCATATAC---TACAGCTTTTAATCCTTTTATACAGGA-AGGAGATTTACTTCTTGTGATTCTAATTCATTTATATTCTGCTCACAATGAGGCTTAGTGTTTATTGAGAGGAATTTGATCTGTAACCCAGACAACTTTAATTTTTTTTTAATGTTACTGGAAGCAAAATGTTG---ATATAAACAAAATGAAAGTAACTCAAGCTGTAAGATTAAAAGCAAAACTTAAATCTCCAGGTTTGTGCCCAAAATAATGCGCTATAAACT-TGGCAGA--ACATTTCCCTGTTTATACTTTT-GATTACCTCAAATTAGAATTATAAACACAAAAGTGTGCGTTTCCTCTTAGTGACTATTGAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTgagagagagagagagagagagagagagagagagagagagagagagagagagagagagaAAACATGTTTGCAGCTCCTATTTTCCTGCAAACATTGATTGGTATATTATCTCCTTTTAAAATAACAATACTTATAACCATAAATTTTCTTATGCTAATCAATATTGTGAATAGGCTTTGGACTGCAGT-GAACTTGAATGGGTGATATAATGGCTTCATGAAAAGTTGAAAATGTTAGTTTTTAAATCA-AAGTGGTCTGGTAGCTCAAAGGCATGAAAAGTGAACTTTCTAAATTGCCTTCAATAGA--TGAAGTTGTG-AGAAACACACATTTGCTGGCACTTGCTGAGCTGAAGAGGTAAATCCTACTCTATAGATTGACTTCCTAATGTCATGAGTCAATTTAGAAATTAGGCCCAAGATAAATGCCTTTCCTCTTGTTGCACCAATGTAGTTAGCTTAATCATGAGCATCAGTGGAGACAGATTGAAAAATAAATTGGTCACTGTCTCCAAGACAAACCCCAAATAGGAAACTTGATATTCTGCACAAACTCTATCTCTGAAATATGCTTT-GAAAAGGCATGGTATAATTATGTGTAGCATTATAGAGATTCTTGTGTTTATAAATATTTTCAGAAGGCTTTGAAATTGTTTGCAAATCCAAAGTTTATAAATGACTTATGAAATCCACAAATTTGCTAAATATGTTTCTGCATTTTT-GCATTATGCACTGTGATTTTTCTTTCTATGTGGTGTAAGTCCCGGGAAAATGGTTTACAATAGGGCTGGATGGGACTACATTTTCCAAACAAAAGAAGCATCTGTTTTTCTAATTTAGGTTTTGAATTTACTTTGGCTTCACAATTGGTTCCACTACAAACAATGTGGTTCAAATGACAATGACATTGATTGCAGTTTCACTTTGCACTGAGAGCTCTCTGTATCCAACACTGTCAACTCTCCTCAACTAAGGACAACTAAGCCTTTCAGCACCTCTGAATCTCAGGGATTGTTTTAGACAAA--GGTATGGACAGAAGGGTAACTTGGCAAAAG-CTGCCACAGTTTGCACAaaaacaaaacaaaacaaaacaaaacaaaaACAACACAGGTACCTAGAACTTGTAAATGACCAGGCTACAATAGCGTATCACTTGATGTTCCTTTTCAACTGTCAGAGCAAAGTTCTTAC----AAACATCATCTCTTCACCCTGCTCCTTTTCAAAGTTCATTAACATGATTTAATTCTCATAGGCCATGGGTCAGGTATGCTTTGCCTCACTAATCTTCCGTCAGCTTATATGCTGTATCCCCCCCCCCCTTTCCATCTTTCCCAGTATAAAAAACTAAGTGTGTGCAGAGCTAGTTAGAGTTCATAATGTCCTCATGACTTACAGAACTTT-----CTTCTCAAATAAGATTCTATTAAATGCATTAATTCAGAGGTTTAGTTTGGATATCACTTATAAAGCCATAGCTACACCTTAGTTTTTAAGATAAATCTGTTTATATTTACACTATATTTAAAAGACTAAT-----TCCCTCCAAG---TGGAGAGCTTGGTCTTCTCCTTATTGAATGTCATTCACTGC---CCTATTCTGGAAGTATCGATTGAATATTTGC--------------CATGCAGTTGCTGCCTTTTGAGCACAGATTAACATG--------------ATAGTGATTGTTTCAATAAGTCAA----------GAAAATCTATCACTAAGAGAGTTGATCAACACAATCCA-TGAA--CTTTTTACAGCATGGTCTGTGCTTATGACATCAGAACATCTTAGGTTGTGTACCTCCTACAGTTTCATTGTCTTAGGTCTGATGACTCTCTTT---TACCTTATGAGCTCAATGGGCATCTTACGtgttgtgttttataaa--aaagatagaaa
s HiC_scaffold_1 134157788 2144 + 233722169 TATTGTGTATTTAGAAGTCAAAGTT------------------CAAGTTTAGCCCCAGAAATCTACTCATTCTCTCATCTGCTTTTGTTCCTGTTCTAAGACT------TTTGGGGAGAAGTTGAGGCTGCCTACA-----TCACTTTAACTGCCATGCAATCTATGTGTACCTGTGTTATCCCATTTGCAATGACCAGAAAATTGACTGCTTGAAGTT---AGTAACTTATATTCTGCTTACAAACAGATCCAGTGTTT--TGTGGATGCTTTGATCTGCAAGccagatgacttt-------ttaaaaagttactggaAGTAACATGTTGTTgatataaacaaaacagaagcatcTCAGACTGTAGGATTAAAAGCAAAAGTTAA-TCCTTAAATTTACACATGCAATGATAGTCTGTAAACTCTGGCAAAccacattttattgtttatactTTTTGATTGCCTCAAATTAACCTCATAA-CATAAAAGTAT------------AGCACTTATCAGGTGTATGCATATGCACGTGTTTGT----------------------------------------------------------------------------------------------------------CTGCACATCCTATACTCCC-----------TTG-----------------------------------------------------------AGTATCATACACGGACCTAGAATTGAAGTTGTACATGAATATACAATGCAATGATTTCATGCAAATTTAGGgacactaatttttaaattggaagAAGTGTGGTAGGTTGAAGACATTAGAAGTAAACTTTCTAA-TCTCTTTAAATAGACTTGAGATTGTggagaaacaaaaattctttGGAGCTTTgtgaaaggaaa--ttaaattcCAGGCTATAAATCCACTCCCTAATGTCCCAAGTCAGTTTAAAAATTATGCATAAGATAAA--ACTTTCTTCTCATTGCCCCAATAGAG----CTTAATCAT-AGCACCACTGGAGACAGATTGAAAAAT----TGTTCACTGTCTCCAAGACAAACCCCAAATAAGAAACTTGATATTCTGCATAAACTCTAACTCTGAAATATGCTTTTGAAAAGCCATGGCATAATTATATGTAGCATTATAGAGATTGttgtgtttataaatattttcaaaaggctTTGAAATTGTTTGTAAATCCAAAGTTTATAAATGACTTATGAAATCCACAAATTTGCTAAATATGTTTCTGCATTTTTTATATTATgctctgtgatttttctttctgttttgtgtaaGTCA-AAGAAAATGATATACAATGGGGCTAGATGGGACTAAAATTTCCAAACAAAAGAAGCATCTGTTTTTCTAATTTAGTTTTTGAATTTATGTTGGTTTCACAATTGGTTACATTGCAAACAATGTAGTTCAAATGACAATGACATTGATTACAATTCTACTTTTCACTAAGAGTGCTTTATAGCCGAGATTGTCAACTC-CCTTGACTAACAACAATTAAGGTTTTCAGCACCTCTGTACCTTGCATATTATTTTGTCCAACATGGGGCAGATTGTACTGCAACTCTGCAAAAGACAGACCCAGTTTTCACGAAGTCAGAA-----------------------------ATGCCTAACATTTA-AAGTCAGAGGGTTGCAATagtttatcttttaatttatatttttaaatttcagagcaAACTACTTACTTATGAGTATAATCTCTCTGTTATGCTCATTTTTCCAATACTTTGAAATTATTCCAGCCTCAGTGACTATGAGATAGGTGAGCATTGATTCAC--------------ATTAATTGTTG---------------------CTTTCTGAGAGTAACTATCC------------------------TTCACA----------GCCTCACATGGCTCTGTGTGATTCCTGAAGAACTTTTCATCGACTGTCCTCA-----AGTTTCactttgaatttcatttaaatatttatgtttctgccttgatttcttaaa-aaatctgtttatgtCTGCATAGTATCCTAA--ACTAATGCAACTCTTTTCAAGACAGGtagaaatttgcatttcttgtat----cTTCATTCATTACTTGCTCATTCAGGGAGCATTTTTCAGGTACCTGCCATGTGGAAGACAGCATGCAAATGCTGGCTCATAGGCACAAATGACTACATTTTCTTTGTTAACAGAGTGATTG----AATAAGATAAGAACTCCAAGGAAAACTCCTTACAGATTGAGTTGACCAATGTGCTCTACTGAATTCTTTTCATAATGTTATTTGTAACTGCCACATGAGaacat-ttcttttgtctaatttctaTAGTTTGAGTGTCTTAGTCTTGAAGAGTATTATTTGGTATTTTCTATGC---GTGAGAATTTTAT------TCTTCTATAAAccagaaatagaaa

a score=28807
s chr3           147483182 1357 + 160039680 AATAATTAATAGACTTTTGTCAGAATGTAAACCAGTGAAGGGAATATTGCTAACCT----TGGTCATCAGCTCATCACTTAGAAATAATGCTTGATTCCAGAACTGATGTTAAATTATCATGATACCATCATTCCACTCAACAA-GTTCTGCTTCCTGCTGGAGAACTGTCGTTCTTCTCTATTTGTTTCATATTTATA-----------------TTTTGTTTACTTATTCACATATA------------TCAAATAACTGGGAACAAAATCACACTAGCAGTTTAGGAGACACTCTC-ATCATCTACGACTTTAAAAGGTAACAGGAGAAGCTGTTCAAGTGGTTCTTTTAAAATATCAAT-ATTTACAAGTTGTTAGGAAGGAATGTTTTCAAGGATCAAACGTCTCTTATGTCTGTTATGTATGCTCATCTCTGTATTGCAGGTAATTTCACGTTTAATATTCTAAGATCAAACATAATTTAACCATAGTTGGCTTCACTTTCCCCAATATCCACTCTTACTTTTCTTAAAGGTTATTTTTCATCAAATACCATATATATCATGTCATTGTACACTGAGACAATTAAGACTTTTGCGTAATCTTTAAATGTCAG-CTATGTTTTTTTAACTGTTCATTTTCAGCTTGAAAAGATATTTGAATCCAAACATAATATT-TCCTTATCATCTCATCTTTCATTTAAACTCCCATTACAACAACCTTGTGTGGCTATTTTGAAGGAAACACGAGAATGAACGGTAGATAA-GCTCATGGATCCTGTCACGTTCTTTTCTCAGTGAAA---TAGTTTATTGCCTCCTAACAGAACAGTAAT-ATGCTATGAATATGAGATGTGAGGCACGCAATGCAATGCTCCATTTGCTAGCTGATACAAATAATACAATCAGGGTTGGTAGAATTTATAAATGCACCATATTTATGTACTTATTACAGTACAATGATAGTCTTGCAATTATGTTTAGAGCCAAATA----AAATATAATCTCTAGAGTAAGAATACTCTGGAGCATGTGCAATATTGTTCCCAGCATGCAGTTGGTGAACTAATAGAAAATACTACAGTG----GTGGT--TTAATGGTGTTGGAAGGTGTG-GGGTACAGTTCTGAATGCCAGTCATTTCAAATGTGAAAATGATTGGTTTAATCACTTGAAGCCCATCTTTCTTAGCTCACTTGGATGGGTAGACAGGCACCTGCTTTCTCTTCATACCTC-ATGAACCATATTCT--------CACACTTGATGGAAGTAAATAAACTTTTCTTGTTAAGGTTTATTATATTTCCTACAAGACACAACTTATCCAAGTCAATCATAatcacccatgtagttcaaggtttt-ata-tctcacctggactactgcaacatatttataagtggcctcATT
s HiC_scaffold_1 134177142 1349 + 233722169 aataaataataagcttTA--TGAAAAGTAAAGCAACCAAGGACAAAATGCTAAACTGCATTGGCCATCAGAATAACTgttataaata-tgcatttttccAG---------CAAGTCAGAA-AATACAGTCACCCCACTGAAAACTGTATTGGTTTCATTTTGCAAATCACTTtgctcttgtatttatttattttttatacatatgcgtgttctctgtttttttttttttttttcctgtgattgACCTGAACTTGAATCTTTGGGAATAGAATTATCC----AGCTTTCAAGACTTTCAAGATTATCTAAAGTTATTATTAGTAATAG---CAGCTATAC-------TATTTTGAAATGTCAGTCATTTGTAATTtgttagaaagaaatattttcaaagattagAAAATTCACTTGC---TTATGTGAGTTTAGATTCATCATAAacataattttgtgtttattattcCAAGGCTAAATATAATCTAA------TTAGTTTAGTTTTTCCTAATATTCATACTTATTTTTCTTACATGTTATTTTTAGGTACATAT--TTTATGTCACACCATTGTGTAATGTca-gattttgatttttacttacttttcaaGTGGCAGATTTTGTTTTGCTAACTGCTCACTTTTAGTTTGAAAAAGTATTCAAACCCAAACATCATACTGTCTTTATCATCTTATCTTTCATTTGTACTCATATTACATTAATCTTATGTGGCTG-TTTGAAGAAAACATTGGGATGATCTGTTGATAAGGCTTATAGATTCTGT-GCAAGACTTTTTCACTGAAATATTAATTTACTGTATCCAAACatagtaattataataatatG-GTATCAGATTTAGACTGCACAACGTAATATTGCA-ACGTAACGTAACAATGTTAATA-AATCTTAATGGgtagaatttataaatttata--atttatgtacTTATCATAGCACAGTAATATTCTAACagctaatttta-----aaatagcacGAATGTACTTTCTAAAGCAGGAGCAAT----AGCATGTGGAATAAGGT----AGCTTGCAACTGGTGAACTGAAAAA-------ACAGTGACAAATGATAATGAACGCTGTTGCAAAGAGTGAGAATCCATTTCCTAATACTAGGTGTGTC---TGCAAGAGGAGTAGG----AGCAACTGATGTGTACTTTTCTTAACCAATTTGATTGGCTTGGCGAGTACTTACTACGCCCTGAAACCTCTGTGAGTCACATTCCCAGAGCCACAAACTTGATGGGAACAAATAACCTTTTCTTATTGAGTAGCACAgctctttctttaaaatgaatcTTCTACATTCCAAATGCTACGTTTTAACTCGTTCAAGTTCTTGATGTTTTCACCTAGATTATTGCAACAACTTTCTAAATTgcctcatt

a score=48495
s chr3           147495705 5199 + 160039680 [encoded data, 5881 characters]
s HiC_scaffold_1 134179141 5114 + 233722169 [encoded data, 5881 characters]

a score=19565
s chr3           147500927 699 + 160039680 TTTTAATAAACCTATAATCTCATTTGATATTTAACAACTTCTCAGATTATGTGAAATATCACTGACTT-TTTATATGCAAATTTCAGTTATATTCCACCATGAA-GTGTTTGCACTTTTT--------------------GTGTAAACTCTTTGCTCAAAAATGTTATGGCTCTT--CCATTTGG-----AGTCAGTTGTCTTAGGTAATGTTC-TGCCCTTCCTAATCTGTTCTTACCTTGCTTCTTGGGCATTACTGAGCTACTACAAACTTAATTGCTACATTTGTGATTTGTT-CTACTAATTCT-CTTTCTTTTTGTAGCTGATAGAACACTCTTTCCTTAAAATAAAATA-------CTTCAGTAATCTCCTAAATGTGTGTAGAAG--------GAAAGTGGTATAGTTTTCCCTCCCTATCTCCAAACCTGCACCCTCTCCTTTCTACAGAACAACACTTGCTTTTTAGC-CTAAGAATTATTGGCTCAGTCCAGCAGTTTGTCATAAAATATTTTACATGACATCCAGGCTTTTTCCCAGTGCTTCTATTTCCTGCAGACTCTTTAAGATC--TTTTTAATATCCTTCTTCTCAAATCCATCAATTTCCGTGTTAGGAGAGAGAAGGCCTTTTGCAATTACCTTCTCTGTGTAATATTTTTCTGACTTCTTTTGAAAGCATCTTATCCTGTATTCTACACTTAATGTATTCCTTTGAAACTTTAGCCTATTTTTTTTTCT
s HiC_scaffold_1 134187132 696 + 233722169 TTCTAATAGAta-ataatcttattt--tatttaat---tgttaaGATTATGCAAAACATT--TGTCTTACGTATGTGCATATTTCAACTATCCCCTACAACTAACATATTTGAATCTTTACTGCAGTTGTATTTGCTGCAGTGTAAGTTCTATGT------ATTTTGCTACTTTTTCCCATTTGGTTTCTAACCAATTGCTTTCAACAATATTTGTTCTCCTTCTGGCCACTTTTTCCCAGGACACCTAA-CATTAATGACCTACCACACTCTC--TTACTATAtttgtgatttattatttttccttctgctttatttttgt---taataaaatgCTAACTCTAGAAAAGGTACTAAGTGTATTCTCTGTGTTCTTC-AAGTGTGCTCTGAAATCTTCTTAGAAACTG----------------CAATCTT--AACCCATTCACTTACTTTTTTATAGAACAACAATTCCTTCCCCGCTCCTAGAATTATTGGCTCAGACCAGCAGTTTGTCATAAAATATTCTACATGACATCCATGCTTTGTACTAGCTCTTCTATTTCCTGTAGACTCTTAAAGATCTTTTTTTAATATCCTTATTCTCAAATCCATCAATTTCCATGTTAGGAGAGAAG----CCTTTGCAATTA----CTCTATGTAAtacttttcagatttcttttttaaggacTTCATCCGGTATTcttcatttaa--tattcttttgaag----agtctctctctctctct

a score=12659
s chr3           147505326 312 + 160039680 TTTTAGTGATGTAGTGAAAAATCCCCTTCTGATGATTCTTAGTGGATACAGAACATAAGTCATGACCCAAAGTCATATTTCCTTTTCACATTTCTCTTTAGACTGGAATGGAGCACAGCATATTCATAAATTTGATATTTCCTCTCATTGAGGAAATCACACATATGATAATATATCTTCCACATCAGAACTCATGAATCTTCAAGCATTTGCATTTCTGTGATTGGACACCCTTTGCCTTTGTGAATTTATTTTCCCTTATGGTTGATGGAAAGTGCCCAGAATGAAGTTCCTACCTGTCAAAAAGTAATT
s HiC_scaffold_1 134190211 298 + 233722169 TTTTAGTTATATCAT---CAGTCTCCTTCCAAC-CTTTTTATTATGTGTGGAAGGTAAGTCATGCCCCCaaataatatttccttttcaaatctCTCTTATGGATGGAATGGAGTATAGTATATTCATAAATCTGATATTTCCTGTCACTGAGAAAATCACACATTTGATCATACATCTTCCTCCTCAAATCTCATATATCTTTGATCATTTACATTCAAGTGATTAAcaatcct---ccttttt-------ctttttcttttggccaCTGCAAAAAGCCTCGAAGCAAGTTCCCATCTATGCAAAAATAATT

a score=48016
s chr3           147506347 2482 + 160039680 AAAAGTAGCCCTCATTCTTGTTCCTCCT---AGAATTCATCTTGTTCCATTCGTCTGT---------TAATTGATTAAGTTAACAGAATTTGCAGAGCGCCAGTGATACTCAGGTTGCAAAGGAGCTTGTCCATGACATAAGATGTGAGGGTGCAGCACACATAGA-ATCACAACAGAGGCACCTGTAGCTCATGTGGACCCCAGAAGTGTTCTCTCAATCCCAGGCCCCTCCCACTGGTCTGGCTACTGACTGTT----TTGTTTCTCTTTGTTATAAGAATCCAGAAATGAGTAAACAGACAGAAA----------GTACTTCTTAGCTTGTTTGGGACTTCTTGATCTGT--------TGCTGTC---------TATCCTA-----TCCTTTACAGC-------TAAGTGCCTGTGGTTATTGGATTGGAGGAAGAA-------GTGTTAGAAAATCCTGGTGTCTTGCAGACTCAGCA-TTTGATACTTCTGGACTAGGATTGGGTATCTGCATGACCCACAGCTCGCTTTTCACTTG-ACGTCTATTCCCACATGGCTTTGGTGATATCATACAGTCACGTACACCCATCTTTTGGAAGATATACTTGACCTTGAACCTCTGTATTCTCTTCCCTAATTC---TTTCCTATTTCCATGTCCCACCATCTTACTCCTTGAATTCTTTCCTTACTGCACTGTTGTTTTCCACAACTGAGGTAACTGCAAACTTGGGATCTAAAATGATGTTTGACATTCAACAAACAAAAGTGTTCT-TACATTTATTAGCTGATCTTTGTCATACCTTCTGCAAAGCGGGTACAACTGGGAGAGGATGGGCTAAGTTGATAG--AGATAGTAGAATAGCTAGGGACATTCTCTCCAGCAAGT-ATTATGTCATGGAGGCAAAACAA-TTGATTTAAACTCTCCCCAATTGCACTGAGTGAAATAAAATAAATAACATGGGTTCATTCTTGCAAATGACACCTCCATCATAGAACTCTTCTTCTCCTTGGTTTT-GCTGTGCTTACATAAGGCATAAATGAA---------TCCCACCTGAATGTAAGGCCTGGCTTTCTAGTAAATA------TGCCAAAA----TGGGCCAGATCTTTGAACCCTTTCAAGCTCCATTTATTTTGTTGGTGTACTGGAGGGGACATTACCTACATCACTGGGATGGTCTGTGTATAGAATTGAAAT---CCATAGTCAATGAGGTTGCTGTGTGTTACAGAACTGCAAAAGTCAATTTTTGTTCCTCTTTTTTAGGTGCCACTCATTGTATCCAAGA-----------------------CCAC--------TGTCAAGTCATAGTCACCTGGA------------------------------------------AAGCCTTAGTAATTATCTATTAAT-----------------------------------------TACATTAAAATCTAT--------------------------------------------------------------------------------GAAGGTAAGCATGGTTTTTTTTTCC-------------------AAAAAAAAAAAAAAAAAAAGATTTGAAGATGATAAGGT----------------------AACAACTTGAATAAGTAACATGCAACCTTCAGCCTAGATTTAATGTATGGCTGGACACCCCTATCTGCCTTCAAAGCTGTGGTTAAGGAGATGGCTTCATGGTGGTAAAGATTTAATGTGACTTTATTTTGTGTAAGCTTGGAGGGGAAAC--CCATCTTTCTTTAGCATTTTCC-CATCTTATCTATATAAAACGGCAACTGATTTAGGTAGAAAGCTCTCCAGAAACTGGTCTTGTAAACTTAGCTCTAATAAACTAAATGTCAATGTGAT--AAAAAGTCTTTACCAAGGCAAAAATAAATCCACTTCATGCCAATTCTGAAAAATATGCTTTTGCTGTAGCTCTGAGAGGCATTTTGGTTTCCTCTCGGGAACCGTTCACGGAGGTCGTGCACAGCATACCCTCCTAGGACTAGGCAGCATGAAGTACTTACAGTGTTCCTCACAGCGGGGGCT-GCAGTGAATCAGGAGAGGCCCCTGTGATC-CCACGCTGCACGGGGAGGTCCCTTTCTTCAGAACAGCCAGGCTCTGCACCACTG-GCAGGAAGGGCTCTTGTGCATCCCGCACACAGGCCAGGAGGATGCTGG---------------GAAgaatgatgggctccttttaa-aaactgacattttatagagaatactgtaacatccttcacttcaaggttgaaaatggactctccaggtaaagggcaggtgagatggatcttaaaaacagCAAACACTGGAGAAAAGCCCCTTGCATTTTTGTGGCTGCCCAGGTGCCTTCCCAAGCCGCAGAACCCCCCTCT--CTACAACTTGCCCTTTCAGCCTCTATTTTTGTCTCGTCACCATTTCTCCACCCCTTGTTACTTTCACCTTCCCTTATTTTGGGGAACATATTCTGGGCTGATTTGGTCTGAAGTGTTCACAGATTATTTCTTCTTTCTGGAAGTTTC-----CCTACTCTCTTTTATGCACGGATAACTCTCATCTATCCTTGGTGACAGTTTCA-------GCCTGAGTTAGGGACCCACTGAATTCTAAACGTTCAGTGAGTTATGGGTTTATAGATTTTCCAAATTTT----CTTTTAATAAACAGGACACAATCCACTGTTTCTTGAGCCTAATGCAAATC-ATTAGTGCATAGTTCCTACTATGT----GAGAGTACTCTCCTCTC
s HiC_scaffold_1 134190499 2769 + 233722169 AAAAATAATTTCTGCTCTTGTTCCATCTTCAAAAATGAAT---GTTTCTTTCCCCTGTCCATTGCGTTCATTGATTAAATCAACAGAATTTATA-ACTGCCTTTTATAATCAGGGTACCAAGAAATCTATCTGTGATTTGAGGTCACAGCATGCAACACACAGTGACATGAAAACAT-----TTTGTAG-------GATCCCCAGAGCTCCTTTTCAATTCCCAGGTCACTTC------TCTTACTA-TGATTTTTCCTGTTACTTCTCTTTATCACCAGAATCCAGCAAGTAGTAAACAGACATAAAATGCATGTgtgtacttttttcctttttttcattgtgCTGAACTTTAACCTTTTTGCTGTcgtcttcttcttttttagtgCTTCCTTTGCAGTAGATAAATAAGTCATGGTACTTGCCTCATTGGGAGAAGGGAATCTTGGGTTTGGAATTTACTGGGGAATTCCAGATTCGGCACTTTCATAACTATGGGCCACGCTGTTGATACTATACTActgaagtttcatttttttttttcacattaaatTCTACCTGACTTT--TCACTTtaactttttcattgttttttttttttggagagcaCACTTGTCTT-------CTatgcttactttttaaatttatttttccttctcctaaATACCAGCAC---------TGTATTCTTCCCTAATGACACTATTGCaacctaaaatgaaaaaaaatg--aatatagaaTCTAGTAAGATGAGCAACGTTTAATAAACAGAAGTTTTCCCTGTGTTTATTAAATGAGCTTCCCCATAACCTCTTCATGGTGAGTATGGCTGGCATGAAACAAGCTAACCTAACTGTAAGATACTGACATGTCTGGTTAAATACTATTCAGCAAATTATTATTATAGCAAGGCGAAATAAATTGATTGAAAGTCTCC-----TTCATTGACTTAGACTAGATAAATAACATGACTTTATTCTTGCAAATTACACTTT----ACAGAA------TTCCCTTTAGTTTCCACAGTGttaaaatgagacagaaaaaaacagtagagcTTCCA-------GTAAGACACACTTAACCTAAAAACACAGTACTATCAGAAGCAATGGGTGAGTTCTGAGAAGGCTTGCA-GCTCAGTCTCTTCTGTGCAAGAATTGAGGACTATCATAACTACTTTACCAGAAAGATGTGAAACTTAAATTGGAATAGTCAATACCCTACTTGCTTGGTACATACTAAAGTGCTCCAAAAAATAATTTGCTTCCACTTTTTCTGGGT--CACTGATTGAATCCTGGATCCTTGCATTCTGGATCATCTTTCCACAGTATCCATGTTTACATATAtccatttaaatatacatgtgtattcatatccttttcctttctgtgtgtAATGAGGGCTTAttagttattattttatatattgctaAGAGTCTACACTTGTAATAttcttttccatctttcattAGAAGCCATCAAAAAGAAGATGATTAACTAGAATTTGGATaaagggggactggggatttaactcagcggcataagtgcctgccttgcaagcaggcagtcatgagttcgatccctggtaccggtaaaaacgaaaaagacaaaaaaaaaaaaaataaataaaaataaaaaaaataataaataaataaataaataaaagaatttggataaagaaaatagagcTTTAAGCACAGAT-------ATTGCGGGGCAGACCTGTTTTCCTGAAAGTCTATGGTTTATTACGCCACTTCCTGGTGGTAAAGAAttgatatgattttattttgaatacgCTTTGAGGGGAAAAAGCAGGATTTCTTCAGCATTTTTCTCATCTTATCTATATAAAATGGCAACTGATTTAGGTA-AAAGCTCTTCAGGAACTGGTCCTGTAAACTTACCTCTAATAAACTAAATGtcaatgtgataaaaaaaatctttactacagaaagaa-aaatttactcCATGCCAATTCTGAAAAAAGTGCTTTT-TTGCAGCTCAGGGAGACTTTTCGGTATCCTCTTGGGGTCCATTCATTCAGTTTCTGCATAGCACAAATTCCCAGGGAGAGTT-TTGTGAAGTAACTACAGTATTTTTCTCAGTGGTTACTGGCAATGAATCATGAGAAAGGCTTGTGATCATTTTGCTTCATGACGA-GCCCTTTTCTTCAGAAGATCCGGCCTGCTCAGATCTGAGGAAGAAGGGCTCCTGCCCATCATGTTCGCAGGAGACAAGGATCCATGATCTGCTTTGACAATGGAGGATGATGGGCTCGTTCTGGCAAAGTCACATTTCACAGGGAACACTCTAACATCTTTTACTCAAAGGTCAAAACTGCACTCCACGGGAACCAGGTTGGTAAGATGGATCTGAATAGGAGCAAACACTGAGAAAAACACCCTTTTATTTGAGTTCATACTCGGGCTCCTT-CCAGGCCACC-AACTCCTCTCTGACTGTGACTTGCCCTCTTGCTCCTCGCTTTTCTCTCACCGTC-TGGATTCAC-----ATCACACTCACCTTCTCGCAGTTTGTGGAACACTTCCTGTGCTGATTTGACCCCGGGCCTTCGTGTGCTATTTCCTCTTTCGAGAACTTTCTCtgacctccttttttttttgcgTGGGTAACTCCTATCTACCCTTCGTCACAGTCCCAGATCAGTGTCTGAG---GAAACTATCAGATCTCGCAGCCCTCAGTGTGCTGTGTGCTTACGTCGTGGTCACAGCGTCAGCCACTTAATAATCAGGGTCTGCCTCAGCATTTCCAGAGCCCAGTGCAAAAAGAGCAGTGCACCACCCTGGCTATGCTAAGGAGATCAATCTCCTTTC

a score=65735
s chr3           147513463 3429 + 160039680 ATTCAATGTTCAGTAATATAAATGCAGATATTTTCTGCATGAACTATTAACAAAACAGGACCTATGTTGATGCCC--TTCCGTCTATTTCTGCTACTGAAATGTTTCCATGAAGGAAATTTAGTAGATGTGA-----CTCTTTGTTCTCTGCAAAAACCTAAGGTTCTTTGTGAAATGATTTCTAGGGATTTAATAACAGGTGTTTTGTATGGATTCCTTGAGTTTAAGGGCAGACAATGAA-AACTGTTAGGCTGAATGCTACTTTGTATACCCCAGGCTATCACTCAAATCTCCTTTCTTCTGTCTTTCTCTGTCTGATTCCACCACAGGCTTTCCCCTTCCCATTTATAGAATCCCGAATT-AAAAGC-CTTTGGCTGCAACAAAATGTTTTCTTGACGGGAGATTGTTAGTTAACTGTTTGAAAACCATCACCTATAGATTCCTCTTTTATGCATTTAG-CTCATAAATATGCATCAGTAAAAATAAGATAGTAGTTATATCCAACCAACCCTTGAAAAA--AGTTCCTTCTTAG-CTTTTCGTTTACTTAAAAACATAGTAGTAATAGTAAATTAAAAAAAAAAAAACCTTCACCATTTACTACCTAAGTAGTTTAGGAATATTTTT-TATTCCTTT-ACCTGTAAAATGTAAATATAAATGTACAGGGCTTAGGAATGTTTTAATCACATGGAGTGTTTTTATTTTAatctagttttctctcatacatacaccctgactgcagcttcccttccctgtacccctaagtcccctctccccccggatccactctccACATTTGCTGTCTCCTCTAATGCCAGCTCTTGAGGCTGGCAAATCACAGCACAAGATGCAAGACATTAATGGAGCTT-AGCTCCACCTGCAAGTCAAGTCCCTCAGCTCACATTGAGAAAATGATTCTCTCTAGGCCTTCACAGCAAGGGCCCTTGTCCCACTCATATCTGTTACACATATATTTCATATGTATCATCCATACATATAACTTATAATTATATATACATACATGTGCATGGATAAATTATATTTCCACTGAAATAGACACACATTGAAATAGACCAATTTAGGATATGatatatatctatatataatatagatatatatgtatcacaaacacatacatgtgcacgcatacacacatacacacacCCTGGATAGGGTTCTACCATATTCTTTGACTTCATTTCAGTTAGCTCGGTAGGAAAGTAATGAAAATGGCTTCCACCACAGACCATCTCT-GATATTCTTCAT---TCTGTCACCGGAACGCAGGGAGACTGGCTTTCCCCTCTGAGCGGTGATGCAGCATGCAAGGCGCTTGCCGC---TCCCACTTACGTGCACAGGGGGCATTACAAGCACCATCCACTTATATTCCATTACAATTGATTGAATATTATACATCAAAAAAAGTAGAAGGAAAATGTTTAAGATTTTATGAATGTCAGCAAAGTGATTAGAGCTCACAGAAGCTCTGAGTTCTGAAGCTTGGCTTCTATCGTGTTCTTACACAAGCATCTTTGATCTTCTCTTCACCCGGCTTTTTAGATGGCTTTTATGTGGTCTTATGATTGTTTTATTACTTCAAGAGAATTAGCCACGTAGACTTTTTTTTTCAAGTAAAGATTATTTTTAAGAGAAATTTTCAACTGCATTATAAATGAGGGGGTTTCTTAAGCTGGACCGAATGTAGTGATT-CTTCTCC-------------GGCCGTAATGAATAGAGC---------------------------------------------------------------------------------GGCAAGAGCTGGTGCCTCTCCTCAGAATTC--------------------------CACAACCAGACCTTGGCAATGGGCAC--------GTGATT------------------GATCCCCTCTGATCCGGTTCACATTTT-CTCTCTCTGCAAAGGGTGACTTTGTCAT--TTACGGGATTAATGAAGTTGGTTAACTTAGAAGAGATTTAAAAAGTGTTTTAAGAAAACAAGCTATTCATT--TAAAAAATCCCAGTTTTAGAG-AAAGC----AAAATGTA-ATTTACTTA--ATAGGTAAGAAG-ATGAAGATACGGTATAAAGGACTGTCAACTGCCTCTCAGGTGTTACTGTTTTCTCATTAGTAGCTATCCTTGACTGTGACTTTGTGTCCTTGGCAGGTTGCCAAGGCCGTGT--AGGCATCCTATGAAAAACCCCACAGGAATGATCTTTCAGAA-AGCGTCAGAATTCGGAAACACCTGGAAGCCTTCCTTTCTACGCAGGGGCTGCCCACTGGGGTCTCCGAACAGTATGATTTAC-TTGTTTTGGTTCCACTGGCATCCGTGTACTATCTGTTTTGCCTGATATGTAATTATTGAGAATATCTGCTATAGCAAACACTGTTCAAACATAGGACACACA-----CTTCCCTGACAACAGCCCAGGTAGTTCTGCTCCGAGGAGGAGCGTGGTGGCAAATGCCATTTCCG-----TGGCAGTGTTTCTAAGAAAATAGTGGATGACAC-----GTAGGGTTCAGTGAAATTAGCTTTTGTCTTTCTTT--------------CAGCTAGC----------ATTTGCATTTCTCGTCTATTTTCCCCTTTCCTGACCTAAGCAAAGCCTTCCTCCAAGCACAACACCCCCTGTCACACCTGTGCCACTCTCCAGT-TTTGTTCTCCCTCTTGTCTGG-----TGTTCAGTATATTTAAGCCCATTGTTTATAAAGTCAGTGCCATGAATACAAACTCATCAATGTCCGTGGAAAGTCCTACAGTAGAGAACTAACTCCCTTACCTCAACAAAAGCTTTTCTGAATCCATTTGGCTAC-AAGTTCCTCCCTCCCGCAG--CAATATTACTTTCTGGCTCTT---------------------TACCTTCTTGGTACATAAAGTAGTCTTCaa----aatatttatataatatttttCTTTGCAAT-CTATC---TCAAAACCTAGACTTCATAAAGAGATTAAACAAAATTGATGATCCCTCTCAGGAATAAG-----TTATAAAA----------------TAAAAATTAACTAGAATGTATCCCAATCATTAAAATGGAATAGAGCTAA-------------CACACC--TGTGATGA----CTGTTGAAGTGAAATATGGTAAAAAAA----AATGTTATGTGTAAGGTAATGAAATGGTTA--ATAGAAATAACTATGTAGCTAGGCG-ATCTAA------ATTTCTAACGCATTTGAAGGATCCACTTTGTAGTAAAATGTCACTATTTGACACAAATACTGAAGAATTTCTACACTGTTACTAGACAAGTTGAAATTTTGAGTATGTGGGTTTATCCCATTTTCTTACAGCTATAATCATCTGCTT---TTTAAAATGTGCTTTCAGGAAAAATAATCTATAAA---AAATTTCTACTCAG-ACTGACAATTTATCGACTTTCATAGGAATAACATGAATAGACTTTAAG--GCCCTTTTCTTGATGTGTGGT-TCGTTATGGGGCCATCTACAGGGATAGAAACATAAGTCTCATCATAAATGAATGTATTCTCCACTATGTAGGGACA--------------------TTTTTCCCCTTTGTTTTTGAATTTCAACACTGCCATTCTTCCACATTTTTCCTCCCATGAACTCTTTTTTTT
s HiC_scaffold_1 134195864 3394 + 233722169 ACTTGGTGTTCAATAATAGGAATGCACAGGCTTTCTGCCTACGCTATTAACAACTTGGAAACTATTTTGATGTCTAGTCCCG---ATGGCTATTCCATAAGTgtttctaagaagaaaatttaggagatgtgaatttctttttttctttccgtAAAAACCTAATATTCTTTGTGAAA-AATTTCTGGGACTTCAATAGCAGGtgtttttatagttttccttGCATTTAAGGGCATAAAATGAATACCTTCTAGGCTGAATGCTACTTTGTGTACCCTCTGCTATCACTCAAatgttctttcttctgtcttt-tccatttcttactaTCAAAAGCTTTCCTCAACCCATT-ACAGAATTTGGAATTTAAAAGCTCTTTTGCTGCAACAAAATGTTTTCTCAACAGGCGCTTGTTATTTAACTGTTTGAAGACCACCACACATGGTTTATGCTTTTGTACACTTAAtcttataaatatgcaccaagaAAATTGGGAAATTGGTTGTAAACAACCAACCCTTGGAAAAGAAaccctttctttgatttttctttta--taaaagc-----------------------------------tCACCACTCACCAGCTAAGTAGCCTGTGaacatttttgtattctttttatctgtcaaa---atgtataattttaaggCACTTATGAATTTTTTAATCACATGGAGT-----------------------------------------------------------------------------------------------------------------TTTAATGCCAACTCTCTTGGCTGGTGTGCTGTAGCATAAGAAGTAGGTCAGTAATGAAGCTTCAACTCTACCTGCGATTTAACTTCCCAAAC---CACTGGGAAAATATTCCTCCCCAGAAAGGCACAGCAGGGATCCTTGTCTCTTTTATATCTATTATTTGTACATTT------------------ATATA--------TTCGATATATTTATATTGGGAT-------TTATGATCTCATTGAAAAAAGTATGTAT---------CCTACCTGTGAAATTAGCT---TCTGTCTTTAACTTTAAAATG---------------------------------------------------GGAGAAAGA---AACGAAATCTTT----TCATTTCAATGAGCTTgttagaaaaggaataaagacaccATTCACAG--GATCATCTTTTGATGTCTTTTGTAAATGTCTCAACTTATAG-GGAAAGGCCTGCTTTGTGCTCTAGGGGGCAGTGCTCCATGT-------TTGCCACAATGTCCACGTTCATGCCCAGGGGCCATTTTAAGCACTATCCACTTACATTCCATTACAATTGACTGAATATTATACatcaaaaa--gtagaaagaaaatgtttaagatTTTATGAATCCCAGGAAA-TGATTAGAGCTCACAAAAGCTTTGAATTCTGAAGCTTGGCTTCTATCTTGTTCTTACATAAGCATCTTTGATCTTCCCTTCACCCAGCTTTTTAGATGACTTTAATGTGGTCTTatgattgttttattattttagaagaattag-----------ttttttaaaaaatagaggttatttttaaaagaaagtttccaTTCCATTACAGGTcaagagatttctcaaaatagaTGGAAT-TAGTGTTTACTTTTCCATGTGTTACAGATGACAGAAATCAAAACAGTTTAGCCAGAAGCAGGCAGGCATCTATAAccttagctactcaggaggctgaggcagaaagttttgAGTTTGACGCGAGTCTAGGCAATATAGGAGgccttctctcaaaaaacaaaacaaacaaactaaacaaaGTTGGCAAAACTAGACTGTACCCCTGGGTACTCCACAGAATGATTATTTGAATTTGGGCAAAGACTTTTATGTGATATgctttactttttcctctttctacaCTAAGCTTCTTTGTCATCACTTTAGGATTAATAGAGTGAGTTAACTTAGAAGTGACTTGAAAACTACTTCACCAGTGAAAGGCATT-ATTAGTATAAAATCCACATTTTGGGGTTAAGCTTATAATAAGTATATTtacttattatatatattaagCAAGAAGATATTGTGCAAAGGAAAACCAACTTCCCTTCAgatctt-ctgttttcctgttagCTCCCACCCATGCTAGCAGC----------AGGCAGTTTGCCAAGGCTCTGCAAAGCTTTCCTGTGGAAAACCCCTCCAT-GTAATCTCTCGGGGCAGAGTCAGAATTTGGATACACTTGAAAGTCTTTATTTCTACA-ATGGACCATCTCCTGAAGTCTTCAAATCGTATAATTTTCATTACTATGCTTTTACTAACACTTG----CTGCTTATCTcatttgttaaataatttttgagTGCTTCCTTTAAAACAGACATGGTTC-----TAGGCAATGCAGATGCCACTCCAAACAAGGGTCCAGATCTTTCTTTGTTGTGGGAGAAAG-GACAGTAAATGACATTTTAGGGAAATAACAAT-TTGCCAAAAAGTCAGAAATAAGCTCTCTTTGTAATGT--AGTGAGATTGACCTTTATCTTCTTTTTGCTTCCCTTGTACCCACAAGCCCAATTCTGGGTTTTCACTCTCTTCCTGGTTTTCATTTTCCATACTTTAGTAATGCGGT-CTCCACACACA---------GTCACATCTGTAATGGTTCCTATTGTTTGTTGCATGTCTTTTCTGATCCTTTAATCATTACATTGAAACCTACTTCTCCTAAAGTATTTGCCATGAAAGCAAATCCAATAAAGGCTATGGAAAATCCTACAGTAAACAATT--TTCTTTTAACT-AACCAAACCATTTCCAAACTTATTTGACCATAAAGTGTCTACCTAAGTAAGCCCAGTATCAACCTTTGGTTCTTATCAATCTCTTTCAAAAGCTAtgccttgtttaaaaaaaaaaaaggttgcaaTAAGAATGTTT--------TCTTCCTTAGGAATGttatcaaattaaaac--aaattgtaTGGCTAAAATA---TAAGTAGCAGATTGTTTTCATTACTAAAAGAGCTCATGCAAAGCaccattttttcctttaagattaacaaacttatttaaaagacattga----gaataaagttaaataattCAGTAGTCATTCTAGTATGATAATATTCTGATggtttgaaa------gaaaaaagcttAATTGTATGAATAAGTTTCTAAATTGATAACTATAGCTATAGCGACATAGTTGGGTGAATCTAATCATTCTTTTCTAAAGTTCTTGAAGGTCCAAACTTG-----------AGCTATTTAACATAA--ACTAAAGCTCTCATGTAATACTGAGAAATGAGTTGGAGCCTTGAATATGtgggtttatttcattttctt----tttcagtcttccATTTTACTTCCTTGTTTACTTTCATAAAA---ACTCTATACATTTGGTTTCCTGATCAGAACTGCCTGGTTAGTGGCTTTT-----AATACTGAGGATAAGCTTTATGCAATTCTTTTCCAG-TATGTAGTCTTGCTGAAAAGTTG-CTGCAGGGAGGTGGATCCACTTTTCGTGGTAGATTAGGACCTGCTTCATGAGGGATGGACGGACCTAACTGGCCTGTCTTCTACCTGCCCTTTATCTCTACCTTCCTTCA----GGTTCTGCCAGATTCTGCCTTCTTTGGGCCCTTTGCTTT

a score=131031
s chr3           147526003 8983 + 160039680 [encoded data, 10137 characters]
s HiC_scaffold_1 134201419 9172 + 233722169 [encoded data, 10137 characters]

a score=56807
s chr3           147544646 5590 + 160039680 [encoded data, 6073 characters]
s HiC_scaffold_1 134237765 5233 + 233722169 [encoded data, 6073 characters]

a score=47637
s chr3           147553603 2274 + 160039680 catatatatatatatatatatatatatatatatattccttaaa--taggtcatatatagacaaaacagtgca------------ctatttgttc--gcactgTAATTTAGTTGTCATTAAAGTGAAAATCATAATGATTTAACATTAAAGATGGA--GGTATGTGTTTGGTGGGGTTAAATTAGACTTTCCTAAGGGCTGAGACCCTCTTTCTTTAAGATCCTCTTAGATCTGCCCTG-ATGGGTAAGTGTTCATACTTTTTTGTAATAGATTACTTTATAAGTTCAAGGTGCCTAATAGATGTCTGGGCTTCC-TATC-ATTGTCACAAAGAAGTGAATATTAGAATTTCTGAATTCTATAAAGTATT------GTAAGTTTGTTAATT---------------------AGTAAAATGATACTTGTAATGAACTTAATTAGTAGTTGGCACGTTTTAGCAAATGCTATCAGCTGGAGTCACTGCAGCTTTCCCTCT-AACTCTTTGCAATTTTCCAGTCACACTTATTATCCTGACGCCCCAATGTA-GGTGAATCAAGACCAA-GTCCTTCCTGCCTTGGGTCTGAGGTTGTAATATGAAGGCAGTTTCCCTGTATCCTGTGCTGGTAGGAGTTTGCTAGGCATGGTGCCAGTTGATAGCAATTGTACAGAAGATGCTCGTCAGTCTCTTCTGTTAGCTGAGTGTGTGgcttgcagagagctggcatatgtatgatctcctttgatc-ttgcaacccattatgataagcagAATCTTT--GTGGAATGTGAGGTATTTTGAGATAT---TACTTGTGGAAATATAAAGACTGCATAGTTTCTGCTAAAGCAAATGGAGATGAGTTTTCATTTTGC----TTAAAGAACACTCTGCT-GTGACTCCAACCAACACTAGGATCCTGAAAATTGCCC--ATACCTTGCTTCTCACTATCCTCTTATCCCCTCT---AGGGATGCTGTAGGTTAAATCTGTCCAAGACTATTGTGGACTTTTCTGTATCCTCTCTGTAAAAATCCATACATTGATTCTATTCCAAACTTGAAATGAATTACAATCCAATGATCTCTTTTTAGATTAAAAACTAGTAAAAGCTCATACTTTGAATAAACAAATGATAAAAACATTTGTATTTTTATTTTGTTCATATAAATTGTATTCATATATGCCAGC----TCACCTAAACTTCAGT--TTTTGTTAGGTTGAAGGAGAAAATGGGATCATT------TAAAAGCATAATACATGCCAG----------------AAAGTGGC------TATAAATAACT----AATTCTTAG----TCGACATGCTAAATATGTGACTTATGAATAATTAATTCAGGCTTTATATA-------GTAAAAGTCCAGAGACATTAAGTGACTAGCAATAGCTCATTGATAAGGGACAAGGAAAGAAGGAACTCATCTGtttttttttttttttttttttttttttttttttttttGTAAATCCTGTGGATGTCACATTATCAGAATTGCTACCTCTGACACTAATGATAAATACTGCAAATACATTTTCCCAGCCTTTGCTGTTGGGTTATATTGTAGCAGACATACAGAGTTTAATGCATTGTCATCT-------------TTTGTGGAAGTGTGTGTGGGAGGGTGAGTGTCTG---GGGTTAGAAACTCCTCTGTTTGCATGTGCTTCTATTTTGAGAGTCACCATTTACATGGCCATTGTCCTGGGTATTCACTGGTGGCCCATTATAATT-TGCTTGCTTTTTTCTCATTAATAACATAAAAGTGTGCAAGGTTTGATAGTTCTAAGTGACAGAAAAATATTTTCATAGGTAGAACAGACACCCGAACCATTGTAATTAAGCGTGCCCAAAACAAGACGAAACATGTCAACGTATTTATGCATTAGATTATGCAGACTCTT---ATGTTATTTTATTAATGTAA-GAGTGACTTTAATTATGCAGAGGTACAAG-TACATCATTGATATTCTAGAA--------CACACCCTCTTCTAATGAAGCAAAAAT--AGTTCAGTCTCTCATTTCTCAAGATTCTTAGAAA----CTCTGTGGT-ATAATATGATAAAATTTGATGACGTACATTATTC--------GACAGAGCCAGGATAAACTTATATTTATTGTTAAAATTTCTGAGGTCTATACTTCCTGCTCTAACATTCACAAATTGTAGTATTCTTTGAAAACTATGTTGGATGCA-GTGTTTTGTCTTGTTTTTGTTCGTTTGTTTGAAATCTGGCTGTAGTTAGTGCACATTTTAAAAAATGTG------TCTTTTCTCTCTATTTCACCCAACA-ATTTATGAGACTAATTC-AGGGAGTTGGTTGC---CCATTT-TCACTTAATGTAGAACTTTGAAGCCAATCAATGAGTTTA
s HiC_scaffold_1 134256406 2345 + 233722169 CATTCAAGTACTTCTACATACACATTAAGTAAAATTCCTTAAAAGGAGGTCATATAAATGCCAAATATTATAGTAGGCCaagttctatttttttatgttttataatataGTTGTTAGCAAATTGCAAATCATATTGACTTCACAACAGAAAGGAATAAGCAAACATTATCTGAGCATTATCTGAACCTCAACAGAGACTGagccatcatatctctgtgattCTCATGGCTTTGTCCTGCATTGTT---TGTCCATAGTTCTCagaatatgattattttataagtCCACACTGGCTATT-GACATTTCAGCCTCCATATCCATTGGCT-----------GTCTCAGAATTC-----TCCTGTAAAGTTTTTAACACATAGGCTAAGTAATCCGTCTTTTAGGAAATTCTTTAAATAAGCTAATGCATGTAATGAGCTTAAGTACT--TCAGCATATATTAACAG-TGTTGGCAGTTGATACCACTGCCACTTTCTCTTTTAATTCCTTCCA---------------TACTTGTCCTTTTGTACCAGAGCAAGGTAAATCATgatctttatttctcttgtccCATCCTTGATGTTTTATGGTGAATGAATTTTACCTATTATCTCTGGCAGAAGTAACTTATTAGGAATGGTACCAACTGATGGTGATAGCACTGGCAAT------TAGTGTCATTTGTTGAATGAACGATTCGCTTACAGCATGATTTAATGTATATGGCCTTGTTTAACCCTTACATCCGGTTTTAGTAAAATGAATCTGTTGGTGTAATATGAGGCACTTTGGAGCGTAACTATTTATGAAAACGCAAGGATTGCATGGTACCTACCAAATCAGGCATAAGCAATTGCTTATTCTGCATGTCTAAATAATAGTTTACTTGGGATTCCAAGGAGCAGTGGAGTCCTGAGACCTACCCTAGTCATTTGTGTTTCCTTCAACATCAGTTCCTTCTCTGAGTGATGGCTCAGTTAAAATTTGTCCAAGAGTATTATGGGCTTTCCTGTCCTCTAT-TCTTAAATTCTAACCCCAAATTATATTGCAAATTTGGAGTGAATTATAATTCACCAATTTGCTTTCAG-ttaagaaataatgaaagctTATATTTTGGACATA-AAATAAGCAAAGTATCTCAATTTTAATCTCATTTacataaaggttttttttttagcctAAAACTATCATATATGATTTAACAATTCTTTTAGAA-AAAGGAAggattgaaataaatatttgctaccTGAGTACTATGTGCCAGGATCTACGCTGTAACAAAAATAGAGATCAATGTAAATAACTCTGGAACTCTCAGATATTCCTCATACTAAATG-----CTTATGAATGATTGATTTAGGTTTTGTAAATGAAGAAGTTAGGGGCCAGGGTCACTCAGTGATGGTCCAGAAGACTGTGTTA-GGAACAGGTGAAGGCAGAACCC-------------------TACCCTGTCCTCTGACTTACATTGCAATTCCTGTGGACTTTGCATCATCCCAACTGCTGCCTTTTACACTAACGATTCACATTAGAAATAAATTTCCTCAGCTTTTTCTGCTGGTTGGTATTTTAACACAGACCCAGagaataatttattatt-tctgtgtgagtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgagtgaagTCTTTCTCCATTTACATATGCTTCTGCTTGCAGATTCATAGTCTAGACGGCCACAGCTGTGAGTATTCACTGGTGGGCCATTATGATGATGCTTGCTCTTT-CTCATTAATATCATAAATGGGTGTAAAGCTTGATAGCTCTAagtgacagaaaaatatttttataggtaTAGCAGACACCCATGTCTTTGTAATTAAGGTTGCCTGAAATAAGACCAAATATGTCAACATATTTATGCCTTGTATTCTGCAGCctcttttcatgttattttattaACATAAGGGGTGACTTTAATTATGCAGAGCTACAAACTGCATTATTGATATTCTATAAACATTAACTACTCCTGCCTCTAATGAAGCCAAAATAAAGTGCAGTTGTTTTTCTCCCAAGATTCTTAGAAAGAAGTTCtgtggcaaaaaaataaaaggagttggTGGCCTTCTCTACTCTCATTACTAAATGTATCAGGATATAGTCACTGTATTTGTTGGAACTTTCTATCTTCATACTATTGACCTCACTAGTGCAAAATTGTGGTGATCCATTAAAA-TATACTAGGTCCCTGAGGTTTGTC-----------------------ACCTGACTCTA-CaatggtatattttaaaatttttagcataCTTTATTCCATCTAGCTCCACTAGTAGGCTTATCAGAATATCTCAAAAGTGTTGACTTCCTTCCATTTGTCATTTGATTT-GAACTC--AAACCTATCAATCAGTTTA

a score=48432
s chr3           147569821 2754 + 160039680 GAAAATGCTGTCTTTAAAATATTTGTTTATTATTATGAAAGAAGAAACTTCATAAAGCCATAATCATACA----------ATA---TTCTATCTTATTGTTTATTAAAAATTCAAAGTAATAAGGTTATTACATATTTTAGAATATGTTTGGATGCCAAAAATTATTTTCAATGATATTACCTGATAATTGTCAAGAAAATGAAA-CTACTTACAACAATGTTGGTAAGAGTAAGAAAACAGGAAGGAAGAAGCACAATCCCGGGCATTGTGAGAG-----GACACAGTCAGCCCATGAGTAGGTAGATTTCCTCCTTCATGCTATTCTTCTGCAGTGTT-----ATAGCACAGCTCTAAAGTGAGAACAAGAGAAAGCACCAAGCTGACATTGCAAAATAATTTCTAACAAAC--------------AAATACAAGTTGAAAAATTCT-------------GTGTTTTCTTTATATGACTGCAGTGCATGTCAGTATTACTCTAGGTACAAATAGCGACATATCAAA-TGTTAGGGGCTCTCTTTTCATGGCAAGATTGCCTGTGATTTTTATTTTCTTTATTTTTCTTACTCCCTCCTACCTAAACAGAGCTACCTATTACAAACATGACCA----TGCCA--CATAAAAT--TGCTTTTCATAGAGTACT--CATTTGAATCTCTTCACCTAACTTTTGTATCCTAATTAAATCCAGTTTTGTTGTTTTTAATTTAATGTG---------------TCATGAAAATTGATCCCAGTTTACATATGGAAACAGAATTCTTTTGGTGATTTGCAGGGGTTGAGGGTCAGGGCATCCCTGGTAAACGTTCTCTTA-AATATAAGAATGGGAGGTGGATTCATTCAGTC---------AATAGGGAAGTGATTGCTTACAGAGTGAAAAAT-GCTCTCAGTTCTAAGTTGAATTTGTTGAGTCTTGAGGTCTTTAATAAAGACAGCAGCAacacacacacacacacacacacacacacacacacacacacaTGCATGCAGACAATATGAGCCAGAGCCTGTAGTGTGTCA---------AAGAAATGCCAAAAGATTACATAATAAAGGGTGACACTCCGACCCCTGCAGCAACATGTCAAGTCTATACAATATAAAGGCTAAACTTTAGCTCT---AAATCATTGGCTAAGGCATGGCTCTAGTTATTTTCAGGCAAGGAGCCTTC----TTTGACAAGAACAAAGTTTTATTAACAAAATGTACTCCCTTTCGCAAAATCTCTCTGTGTCAAGCACTTCCAATGAG----------AAAGGGTAATGTTTGTTCCTTTGAAAATGAAGCCAATCTCTGT----------AAGGAATTCATTTGAATCAGTATGCCCCAAAGCCAAAGGAGAGGGCATTATTC-TGTCTTCTTTTGTCTCTGTACAAATGTTCACAtatgcgtgtatgtgtgcgtatatgtatatgtatatgtataggtataggtataggtataggtataggtataggtataggtataggtatTCATACTCGTACACATATAtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtgtgtggtgtgtgtgtgtgtgtatgtgtgtgcacgtatgtgtgcttgtgtATTgctgggcatagtggcactggtatttaataccagtatgcagaggcaagcctatctctgtgagtttgagatcaccataatgacttgcaggatagccaaagctatatagtaagagcctgtatccacaaacaaaGCCAAACACATCTTCTCAGTACAAGGGTGACATTCCATTACTCTCCCATCTGTTTTATATCCAGGAAGCTTCATTCTCTGAAAATCTACCCTA---TGTCAGGTTTGGTTTGTTTGTGTTT--AAACTTTCAAAACTA--TGGGAAG-----------------------------ACATTCACAGGAAGGCTTCTTTTCCTGTTGCTTGATTAAAAAATGCCAGGGTTCCATCAAGCGAAAAACATGCATTTCCTCATATGTTATCCTA-TATATTTAATGGGAAATTCATTTTTTAAAATTATAACATTCGT-ATTTTCAAACTATAACATTATCTTCACACA-TTAAAGTTGGGAACTTTGG--GTTCACATTACATTTCCACAGACATTTTGTAGCATGGTCTCCACGTATTAAAGCAAATGGTGCACATTTTCAGAACTCCAAATGAAAAACGTCCATGTTCAAGATTTTGGAAACATCTTTTCCACTTCGGACCCTTTTAATGTGGTCTTTAAAATATATGTAACAGACCACAGGGCACATGTTTCTCAAGAGTATGCACATTAAATACTCAGAAGTGAGGACGTAATTCTATGCAGATGTTGTCATGGTAAATACTCATGATAACACACAGGAAAGTGGCCAGAACTCAAGTTTAAATCTAGCCCAGCCAGACTTGAATTACTGGCTGTTATTTTTCAAAACATTTTCCTTTATTTTAGTCTTAATGAATAAATGTTTTCAGATCTGATACAATAATGTTTGAATTCTGTTGAAACCACAGATTTC-CCTCTTCTGCAGCT-CTGAGAGAGCAGTGCAGGCA-GGAGGTAAGAGCTTGCCCTTCCCTGGAGAAC-TCCTTTAGTGCATTTACATCATTTGAGTTATTTACCTCTAAATTTCAAGTTGGTCTGCTAGAAAAGTCTCATAAAATGTTCTGGAACTGCTTTCTTAAAGAGGAAGCCTTTTCTCTTTAAACTGTTTTTTAAACCATTGTTGGTTGAAGAAA---CATAAAACCAGAATGAAATAGTCACAAAATGTGAAGTTGCATTAGATTTGCCACAGACAGATATATTTTAGAAGTCCCCACCCAAGAACATCTTTGAGGTCCTGTC
s HiC_scaffold_1 134262687 2493 + 233722169 gaaaatgtcattttaaaaa-----gtctttt-ttaaggcagaagaaattttaaataacaa-aataatacactTTACAGTAATAGGTTTCTCTTTTCAGgttgtcaaagaaataaaaattgaaatggtATTTAACTGTTTTCCATATGTTAGAATGGAAAAACTTACAATAAATGATATTGATTAATGTTcattaatataaggaaagatatATTAAACTCTGACATTGAGAGTACAAA----TGGGGGAAGGAGCATGAATTC---CATTGGGAGTGAGATAGAAATTGGCAGTATGTAGCTAGATACAGTGTCttcttcaagaaatttatttaaagaaatgaaatatagcATAATTTCATACTGA--ACAAAAGAATGCATGAAAATAATGTTTCTCGACAATATCAGATAAATGGGAGACATATTTAAAgtttatactcaaagatttttttaacattttgtgtgATTCACTTGTGTACTTGcattatatgtaaatatcatgctaaagaaaaa-----ataaatcaaaatacaaggtggtct-ttttaaagatgaaattacacgtgatttctattttcattatttggcTTACTTCC--CTCCCATGCCAATGCTTCCTACTATGAAAATGACTAACTTTCCTAACCATAAAACCATGCTTTTCATCAAGTGCctacatttga-ttttttaacatGATTTAT---TCTTAAGAAAGTccacttttacttattttatttttacatgcttCGTGTGGTTCATTTCTGCACATTGG----AATTTCTACATTGGAAAAAAGAGCTACTGGTGATTTG-----GTT-AGACTGAGAACATCCC-AATAAATTTTGTTCCATAAAATAAGAACCAaaggcttattttttctttttgtcatcgaAATAATAAAGTGATtgttcacagaaaagaaaatagcatcCAATTTT--GCAGGAGTTGTTG-GTTTTG-GGCTGTTGATGGTGACTGGTGCATGGCTCACAAAAA---------------------------------GTAGA-----------AGAACCTGCAGTGTGTCGTGCGATGTGGAGGGATGCAAAGTGACAGGGTAATGAGAGGCGACATGGT-----CTGCGAGGGCTCTTCAAGCTGGAACACCTCGAAGG--------GGGCCCTCGGAAAAACGTGGCTGAAGCATGGTTCCAGTTAGTTCCATGTAAGG---CTTCAACGTTTAAAAAGAA--------TGTTCACAAAATGTTTTCACTATGAGAAAATGTTTCTGTGACAACTATTTccaaagggggggaaaaaaaaaaggtttgattTGCTATTCTACAAAAGA-GCCATGCCCCACGcctccacacacacactgcatttcAGTAAGAA--CCTCAAAGCAAAAGGAGAGGCCATTACtcctgtatttacttttttttattca-----------------------gTGCTTTTTTCT-----------------------------------------------------------CAATCATTGTCCTACAC--------------------------------------------------------------------------------------------------------------------------------TGGTAATGATACCTTCTGACTGT-------------TCAGTCTATTTTACTTTGAGG---------------GCAAGAAATTC------------TGGAAGCTTG-------------------------CTTTTCTG---------GTTATTTActgtatttcttattatttttaaatc----aaacatTATTTTTCCAATGTTAATATTAATCGTtcaggttttctttgtttttattttaagattctgtAAACTAGATGAGAGGTTGATGCTACACTTTCTTTTTTGGCTTAAACACTTACCTTAGGGCTTCTTTTGAAGTCGGTTTGTTAAAAAATACCAGTACTCCATCCAgtgataaaaatacattt--tcctcgATTTCCCTACTGTCTTTA------------TTATTTGGAGTTTAATTATTTGTTACTTTCCAAATATAACACTGTATTGAAATGGTTAAAGTTGGTGActttttttattcactttaagTTTTAACAGACATTTTAGGGTATGCTCTCTGGTTATTAAAGCCAATACCGCACATTTTCAAAACTCCAAATGAAAAATGTCCATGTTTAACTTTTTAGAAACATCTCTTCCACTTTAGATTCTTTTAATGTggtcttaaaaatatatgtaacagACCACAAGGAGCATGTTTCTTGAGAGTACACG-ATTAAATACTCCGAAGTGAATAGGTAATGTTATGCAGATGTTGTCTTGGTAAATACTCATGATGACTTCCATGAAAATGGCCAGAACTCAAGTTTCAACCTACTCTAGTCAGACTTAAATTACTGgctgttatttttcaaaacattttcctttattttagtcCTAATGAATAAATGTTTTGAGATCAGATGCAA-AATGTTTGAGTTCTGTTGAAACCACAATTTTCTTCTCCTCTACACCCACCATGAGGGTTATAAAGACACACAGATAAAAGATTGGGCTTCCCCAGAGATTGTTCTTTAGTACATTTACGTACTTACAGTTATTTTCCTTGAAAGTTCAAGTGAGTCTGCTAGAGAAATCtcataaaatgttttgaaaccatttccttaaaaacaagaccttttctctttaaataacttTTCATTCAGTTATTTGTTGGAAAAATAGCATAGAATGTGAAGGAAAT----------------GCTGAGTTCCTCTTAttcagaaaatacatattttagaaattacTACCTGAGAAAGTAGCTGAGGTTTTATC

a score=106157
s chr3           147574887 3031 + 160039680 AAAAGAAAATCAGAAGGTGACTTTGTGTCTAAGCTTCACAGTATATGTTGAGTC----ATGTCCTAAGTCTCTAGTTATTTTCTTGCCTTCTCTTTGTAAAAGAA--GACTTGCAAAATGGCATCATTCAAACACTTTGTTTAGGGATTTTGTAGGAAT----GAGGACCCCAGTTTAAACTTTTATAGCATTCCTAAGTCTTAACAAAATTGTAAGCT----------ATATGGT----AGGTTATTGGTGTATCATCTTAAATCTCTTGCAATTT-TATTGCTTATAAATAGAATAATATATGAAATAATTTGTttcttcttggtatcacatgtagagctcagcacatcgtaggcactcagtgaaagtttTCAGCTATTGAAAGGACTTTGCAGCTCA----TTCTTGCCTGGATTTCTGAGCAGACTTTGG--GCTGACATGCATTGACCTGCTTCATCTAAGATGAGCACTTTCTTTCCCCTTTAGAGATGACATGCTGTTAACAGCATGGTCTGTTACCTGATATAATATGTGAAGTTTAATCACCAAAAGTAGCTACTTCTGAATATACCTGGAGGAATGACCTGATTAATGGGACTTATTCCCATAGCAGAAGCTTCATCTTCAATGTATTCTCAAATGCACAACACAAGTTTTCATGAGCAACAATCATTGGACTCTGAGTCACCCGATTCTGTTATTCATTTTGTTCAATAACCTGTGAAAAGAGCCTTACTCTGTGATTGTTTATGACAAAACATATTCTCATTGTGATTCTCTTCTTCAACTTTGGTACCCATTATCCCTGCTAACAGTCATTATCTCTGTCCTGGGCTCTTGGAGGCTTGTAAAGAGGCAGCTGAAACAGTTCTCTTTATA-AAATGCAAAAGTCCTTTCGAAGAATTCCCTCCGGGAATGTGTACAATAATCTCAGAACATGGGCTAGCTTGAAGTGGCAAATGCTGACAGTTCCTGCCTTTGGGGAAAAAAACCCCGAGACTGTGGAGACTTTCTGACAAATGTATAGTCAACTCTCTTGCTTC----TTAGCTGTTCACAGGACAAGTATCACACAAGGGATTACAAAGTCAATGGCAATTTCCCTATTAACAT-CCCTG--TTTTAGGCTGAGTTCCAGGGCAAGAATATTCAATCCTT-ACTAATTCTTTCTGACTCGTCAGGTCCAGAGTAATTCAACTTTGAAGGTAAAATTACCTCATATCATGGAGCATTGGTTTTTAAACAAAAAAAAAAAAAATGAGACTGATTTATTTAGAAAACAAGATGCTACGTCCCCTGACCTGACCTAGAGAGAGAAAATTCCTACAGAGGGAA---------TGACAGTGT------CTTTTATAGAGTTGGTAG--GTTTGATTTTGTTTTCTGTAGAAAA-----------------ACAGATAGATATGACCAAAGAAAAATAATGAGTTGTCAGAGTCTTCTAACCAACC---CTACAGGTCCCAC-ATCCAGATTGGCCTATTCTTT-CTCTTGGTGCAGTGGTACCACTGTTAAAGATGCACTCAGATGAAGAAGTGCATGGGAGAATGGCAGAGCTGCAAGTCAACAGAGAACCAGGAAG-GGCACCATGCCTTCTTTCTGATGGCTTTTCATTTCAAAGAATTTGTGATATTTTTG----------------TTTTGTTGTGCTGTGCTTGTGTGTCTACTGTTTTGTGAATAATTTTACCT--------------------------------------TCAGCaaatattttt--------------tttaaaaattaGAAGAAC-----------------------------------------------------TGGTGCAATTGTGTTTCATTT------------------------------ACAGTACTTTT-----------------TGTGTTCTTGATT-------ATCTGCTCTTAAA-CTTGCTCTGAACAGCTGTATGCATTTTAATGCTCTGTGCCATAGAACTAACGTGTGGAAGCAGTCCTCTGTGGGAATAAACCCCGGAAAGTC---TGCAGCTCAACTTGGCCTCCTACTTCATGGTGTTCATGAGAATCAAACAAATCATGGTTCAGGAAACA--TTTTGAAAAGATAGGTGCCGAGC----GTATCGCCGAGCAGAAGATGGCTAGAGTAGAGGATTCCCACAGGTCTTTGATTTCTGCACATGTGGGGCTC-CCTGTGGGAAAAAGCCTCTGGATAGCATGCATACC-ACACAGCTAATTTACAGAACCTTGGCGTGGAACCCCCCCTAATTCATG---------GGAATGAAGGTTTCTCTGGTGAAAAAGCTATAAA-TGACTCTTCATTTAAATGAGTTAATCTCCAGCGTTTTGAACATAGGGATGGCAGTCTTACTGTGGAATCTACACTGTCCC------GTGGGCTTTTCCacaaacaaacaaacaaacaaaAACAACATCTTCTTGCCTTCTGATTTTTGTTCTTTTGAACAAAGCCATAATAGCTCCAGTGCATTACACTTTTAATTACCTTTATTTAAATAACAAGTGATTTTATTAAATAGTTAAAGGCACAGCTTAGCAAATGCTTTCCCATTACGAAACCTCCTTTTATTTCAATGAATTAGCTTGCACCAAGTAACGAAGATGCAAATATTTCAGTGTAGAAGATCCTTACTAATGGTTAAACACACTGCCCATTTGATGCTGAGCCTGACACTCAGATAAGACATTATCTGACTTCATTACCACAAAGCTCACCTATTTTATCAGATGAGTTGGGCTTCAGTAATTCAGACTATGATTAGCTGAAGAGCAAAATAGCCCCTAGCAATTAGGAAGCATATTTAAAAGTACTTTAAACCAAGTAT---------AGGATTTCCCCCACTCCTTCATTCTCTTTAGACCATTTTCCAAACTCAGGCTTATAATTGAAAGAAAATTTAATCCTGCATTAACCATATAATCATCTTCCAAACTTGGTTCTTGGAGAAACTGCTCCTCTCTGAAGTGGGTTAGCCCAGACTGTGTGGATTAAAGATATCAGACCCCAATT-AAAATCTTGTAGATTTAGTTTTACTCACAAAATCTCTATTTTTATCCATACTAAGTTGCCTGAATACTAATTCTTAACATTTAGAATATTTTTTTTCACAGTAAGTTCAAAAAATTATGGGAATCGAATAAAAGAAGC--AAAAGC-TGTGTGGTGAAGGGAATATAGTGCTATTGCCTACTCAGTGAC--------ACAGAATCAGATCCACAGCCATTGA
s HiC_scaffold_1 134265336 3199 + 233722169 aaaataaaaccaaaaaactagTTTGTGTCCAAGATGTAAGATATCTATTTTGTTGAAAATCTCAAAATTCTGGGACTATTTTCTTGGCTTCTCATTATATAGAAATAGACT----AAAGAGCTTCACTGCAGCTCCTT----ACAACCTTCATACCAACTGGCAAGGATCTCACTT--GATTTCTATAGGATTCAGAGGTCTTAATACATTTCCAAGATGCATTTCTTAATACAATTCTAAGATTATTGTTTTACTACCTAGAAATGCTTACTGTTTCTATGGTTTATGAA-------ATATATAAGGCAATGCATTTCTTCTTAGAATCTTCTATAGTGCCTAGCACATAGTAGGCACTCC----AATATTGCTATTATTGATGATATT---CAATTCAGTTGCTCTTACCTGGATATCAGAGAGTGGTGTGATAGTTGACATACATTAGCTTGCCTTATCCAAAATGAAGGGTGTTTCTTGCCTTTACAGATAGCACACTGCTAACAACATGTTCTGTTACTCTGTATAATATGTGAAATTTAATCACCAGGAGTACGTATTTCAGAGTACACTTGGCA-AATGACCTGATTAATGGGGCTTATTCCCAAAAGAGAAGCTT-GTCTTCAACAAattctaaaatgcaaaatatgaatTTACATGAGCAACAAGCATCAGAATACAAATC--TCTGTTCTGTTATTCATTTCCTTCAATCACCTGCGAAAAGGGCCTTATTCTGTGATTGTTTATGACAAAACATATTAT-GGTATGTTTATGTCCTTCAACTTCAGCATG---------TGTTAGCAGTCAGTCACTTTGTCCTAGGCAATCAGTG---CGTGCAAAAGCAGCTGAAATA-TTCCCTTCACATGAATGCAAAAGTCCTTCCAAAGAAT-CCCTCTGGGACGGTGCACAATGATATCGGAACACGGCCTAGCTTGAAGTCACAAATGCTGACAGTTTCTGCCTTTGGGGAGAGAA-----GAGACAGTGGAGACATTCTGACAAATGTGTACTTGACTTCCCTGCTCCCCCCTTATCAGTTCACAGGACAAGTGTCACCCTCAGGATTACAAAGCCAATGG---------TGTTAAAATACCCTGCATATTAGGCTGTTCTCCAAGTCAGGAAAAACCAATCATCCACTAATGCTTCATGACTTCTCAGGTGCAGAGCAGTTCAGCCCTGTAGTTAAAAGTAGTATATATCATGGAGCATTGgttttttaacataaaa--------tgaaattcatatttttagaaaataa-----taagatTTCTGAATTGACACAGAAAGAGGATAATTATACAGATGTAAGTCAATTAGTGACAATGCTAGAACCCTTTATAGAG-----AGTTGCTTGGGTTAGttttatggaaaaaacaaaaacaaaaacaaaagcagacaaGCATGACCAAGTAGAATGGGTGGCTCGGGGGGCTCCTTTAAGTAACCAATTTTGTGGCCTAACTACACAGGTGACCCAATTCTTTTCTTCTGGTTCAGTAGTGCTAA----AAATGTGAACTT-GACTATAAAAAACACAGAAGCATGAGAATGTTTATTGTTGACAGAAGGACAGAAAATAACATTATGGCTTCTCTCTAATGGCTTGAAATTTCATAGATATTTCAGCATTGTAGGGACAAAATTCTTCCTTTTCATAAAATTCACCCATTCTGTATAATTTATGTTGTACAAATTTCCCTGAGAAAAAGTAGATGGAAGTATAGCAACTTACACTTCTTCCCCAAGTGTATTTGGAAGTGCATCAGATTTAGAAACCAAGGAAATACTTACCATATGTTTGGGGTGGgtgcaaaacaaaatttgatgTTTTTCATATGTGATACAGTTTTGCTTCAGttcatgtaaaaaaagaaaaacacatggaGGAAGCAGTACATTTGTACACTGCacttaaaatatctttttgttttacagAAATCTGCCCTTAAAACTTGCACTGAGCAGTTGTATAAATTTTCATACTTTGGGTTGTAAAACTAATGTGTATAAAAATTCCACTACGGGTATGAGCACCTGAAAAAACAGTGCAGATGAACTTGGCCTGCCAATTCCTGTCGCTCATTAGAATCAAACAAATAATCATATAAGAAATACTTTTTGAAAAGACAGGTGCAAAGCAAAAGCAT-GCTAGGCAGAAGACTGCTAGTCAA----ATTACTACATTTCATTGATTCCTGC-CATGCGGGGAGCTCCTGCAGGGGTGAGTGTCCTGATAATAGGAATGCCCACATAGCTAATTTACAGAACCTTGGTGTGGAACTCCC--TAATTCAAGAACTCCAAGGAAATGCAGGCTTCCCTGGTGGAAAAGCTATAAAATGACTATTTATTTAAATGAGTTAATCTCCAGCTCTTTTAAAGTATCGATGGGATTCTTATTGTGAAGCCTACACTTTCTTTAAGGTATTGGCTCTTTCTTACA-----------ACAGAAA---------------------TCCTTTCACGATGGAGTAGGTATGTAAAAGTTCCAGAGCATTACACTTTTAATTACCTTTATTTAAATAACAAGCAATTTTATTAAATAGTTAAAGGCACAGCTTCTCAAATGCATTctcatttctaaacattttcttACTTCAATGAATTGGCTTGCAACAAGTAActtgaatgaaaatatttcagtctGTGAACTCCTTACCAATGGTTAAACACACTGTCC-TCTGATGCTGAGCCTGACACTCAGATAAGACATTATCTGACTTCATTACCACAGAGCTCACCTATTTTATCAGATGAGTTGAGCTTCAGTAATTCAGACAATGATTAGACGAAGAACAAAATAGCCCCCAGCAATTAAGAAGCATATTTAAAAGCACTTTAGACCAAATGTACCTCTTGCAGGactt------tttcttcattctctttagAGCATTTTCCAAATTCACTCTtataattgaaagaaaatttaatccTGCATTAACCATATAATCATTTTGCAAACTAGGTTC----AGGAACTACTCTTTATTGAAGTGGGTTAGTCTAGAATTTGTGGATTAATGATATCAAACCCTATTTAAAAATCTTGTAGATTTAGCATTCCTCAC-AAGTCTCTATTTTCAATCTTATTAAGTTTCCTGAATACTAATCCTTGGTACATAG--CATTTTTTCCCCCTAAAAGCTCAAAGTGTAA--GAGCTCAAGCAAAAGGCACTGAAAATCATATTCATTAAAGGCAGTAAGTTCCTTCTTCCTATTTAGCtactgaaaaatacagaaacagatCTATAGATATTAA

a score=41532
s chr3           147583564 975 + 160039680 ATTTCTGAGTTGTTCAGCCATAAAAATATCAAAGTTTCCATTTGAAACTTCGATG-------GAATAAGGCA--AATGAGACTGAATTTTTGTCTACGCTACATATTCTCTGCAGAGAAAA-GGTCCTCCTTGCAAAGGGAAGTCAGCATGAACACTTTACTTCTCATCCATTCAAGTTGACACTGCCTTTGGAAGGAAGCACATCAGAA-GGATTGCTTAAATTCCTATGCACATTTTCTCAGGCCAACGAAGGCTCCTACTGGAGGAAAAGTGCTGGGTAATGGTTGGATCTCTAAGAGAGAACACGTTCACTGGTGACCGCTGGCTGCACCCATGTGTTATGGGTTTGTTTATTTTTAATTGCTCCACAGTCCTCCTAG--TGTGAGAAGTGGCATTCTCGTGAGCTGGCACTTCTAGTTTTAATTTATGCATGAGTTTGTACATTGTTTTTCTCCTGCAGTTCTCAAAGAATTTTATGGGCCATTACTGAGTGACTAAAATGGGTGCAGATTTTGCAAGCCTCTGCCAGAAGATCTTTATTACTGCCATCATTCTTAGGGAAATCATGTTCCAGCAGGTTCAGGCAGTGTGCTAAACGTGGCACATGTGTGAATTGGCCATTTCACACTGCTCTTACAATATTGTCAGTAATAATAAAACC-AAGGGAAGATGAGGGGAGGGAGATGAGCTACACATTAATTTGGTCAGGAAGCTTAGATATGTGATCTTCGTTAGACACAGAGAAGCAAAGTACAGCTTTCTTTGTAAATGCCATGCCAATGGTAAAGGCAATCTCTCT-TTTTCAAAGCACCCATCCTGTGAAGGAGTTTTTTACTTCGTGAAGTATATGGCCAGTTCTCAAGACCCTTGGAAACATCTAGATGATGTGATTTCTATCAATG--------TGGTAATTTTGGAGAACAACCTTTGATATAGC-TCTCACATTGTAGTAATAAGG--AGCAAAACCCAATGAACAGTGAAGTGATA
s HiC_scaffold_1 134271767 966 + 233722169 atttctgaaattttcaccCACAAAAGTGACATAGCTC-------AAACTTTAATAAAGctcagaataaagaagaaatgaga--aacatccTTACTGTATCACAT-TTTTGTACAGATAAAACAGTCTtc-----aaagagaaatcaagataAACACTTTCTTTCTCATCTATTCAAATCAATTTTGCCTTTGTAAGAACACTCATCAGAAAGGACTATGTAAATTACC--GAATATTTTCACAGCTATAAGAAGGAATCTACTCAAC-AAAAGTCCTGGGTAATGGTCGGATGTCCAACAGAGAGTACTTTCTCTGATAACCTTTGGCTGCACCCACGTGTGatggttttgtttagttttaattgCTCCACATTTGTCCCAGAGTGTGAAAAGTCGACTTTCATTGAGCTGGCACTTCTAGCTTTAATTTATGCATGACTATGTACATTGTTTTACTCCTGCAGTTCTCAAAGAATTTTATGGGCCATTACTGAGGGACTAAAATGGGTGCAGATTTTGCAAGCCTCTGCCAGAAGATGTTTATTACTGTCATCATTCTTAGGAAAATCATGTTCCAGCAGGTTCAGGCAGTGTGCAAAACATGGCACATGTGTGAATTGGCCATTTCACACCGCTCTTACAATATTGTCAGtaataataaaaccaaaggaaAGACCTTGGGGAGGGAAGAGGCTACATATTAATTTGGTCATGAAGCCTCTATGTGTGATCGTTTTTAGACCCAGAAATGCAACATGCAGCTTGCTTTGTAAACATTCCTTCAAGGACTAAAATAGTAGCTTTAACTTGGAAATTTCCATTTT-CAAGAATGTTTCATATCTTATGAAGCCCATGTCCAG-----AA-------GGTAATATTTTGGTAAGTTG--TTCTATCTTTGgaattgatttttagttttgaaaa--aagTTTTCACCTAGTATTTAACATACCagtgataaagaaaacaaaaccaactcaAGGTTCAAATTATA

a score=52869
s chr3           147587979 2595 + 160039680 AAAAGGTGATGCAAAGATATTTCAACCACAAGAATGAGTGTAAAAG-TCCTCATGATGAGCTAAGGAAG---------------TTTTACTTACATAAAATTCTACATGAGAGAAACGAACATAAT-TACAGAA--AGTGATATGAGTGAAGTCTGAAGTAAACAT--------------AAAGACATCTAAGGACA---------GAAGGAAA--------ATCTGGGACTTAATGGGGAGGTTTGAATCCTAGTATTGCTGGTGGTGTAGTTAAAGTACCTCTGACTTATTCTGAGTAAATTATTTTAAATATAGAGATAATTCTAATAAAACAGTATATATCATCTAAAGCCCGAGAAAACCAGTAT-GTGATTTGGTATTGGTCCCCACTTCTTTATACATCTTCATATCTTACTACAGGACACGGAGA-GAAACAAAGTAGAAA---CTAGGAGG----TCATTACTCATTTCTAAGAAAACTACATTTTTCCCTCAGTTTCCTCCTCAGAAAATGACGTTTTTAAATAGAAGAGTCAGAAGATAATTTTGGAAAAGTTGAACATTCAGATTCTCATTCACAAactggttgtgtgagtggagtctaacctc-tgtggttacagtttaatcgtctacaaaattggagtaaaaatGAAATCTGTATTTGGGGGCTGTGTTCATTTGCTTGTGAACAATCAATGATAGAAAACTTATTAGTTGCCTCTGTCCTTCAATACCTAATTATTTGATGTAATTTCCCATGTTCTTTCAC---ATGAAAACTT-AAGATTGAGCCCTGAAAGCAAAGAGGACTAAAGCCCCT----------------------GTCTCCAGAGAGGGCATTAGGGTTTCAGTGAAAG---TCTTTGTCTTGCACTAACTT----AGATACTCTG----------CTTTGAA--GGCAGGAGCAG-----CAAGAAGGGC----ATGGAGTGGGGAGGGTGGGCCATTTTGAGGAACTCTGCCCTTAGCACTGACCCATCTCATTGAGACACCTCACAGCTCT-------------GTTTTAAGTATGCTCTCCCGACTCTGTGGCTCCACAGAACG-CCCCCGCGGGAGCTCCACAAGCTATCTAGTGCATTTTGTTACACATTTCACATGGAGAGTTGAATAGGGTGGCGGTTCAGAAAATTCCCATTATGAAAAAGTATTGTATTTGTGTTCATCTTTCTTACTTTTCTTCTC---AACCACAGCTGTGATAAAACA-------GTCCCCAGACAACCTTCTCCCTAGAATCTCCAAAATTACGGGTAGAGAGGGAGATCCATTGTCTTGGGAGCACTGTGGGAAAGAAATT-------TTCCTTAAAGCTATGGCGATATTTTCTTTATAGACAAATACTTACGGTTTT---TACAAGATCGCAAGAGAACAAA-GAGTCCAAAGAAAACTTCAATGATATACCAAACCAGGTCAGAGAAAGGTAGATCTCTTTA----------CCACCTATGGACAGAGAGCACTTCATAGCCAATGTATCAGCCAAACGCTGCCAACGGGGTGGTTTGAACAACTCCTCTAGGGCCAATTTAAAAGGGTAAACATGAGAGAAGCTTTTATTAATGTTTCCCTCCATCAC-AAAGCAATTTCCCACTGTCATCTGGGCTTTTTACGATGGCCCACTAGCAGCTCCAGCCACTTTAGTTTGCCACTGACTGTGCTCTAAGGAGAAAAGGAAACAAATCAAATAATT-AAAATAGTCAGAAAA-ATACCACTCCAGAGTGGCTTGATCATTT--AAAATATTTATAAGAGAGTGCT-TTTCTAAAGAGGGCAAAGgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaAAATATGTGATCTCCTTCGCTTATCAAAATGAGCCAGACACCTCAATGCCCTTTTTATCGGGATGCTAACTTTCTAGCTCCACTGCGGACTCATTGTTGTGGGTCCAGCTGCTGCGTACCTTCAGATTGGTGGCTCCA--CATCTTCAGTTATAATCCTATGGGCTGATGTTTGCATGACTGTAGTGCTTTCTGGTAGATTTAAAAACCCACACTAATTGATCATGGTGAGAAATGTAGAGCATGACCATTCGGGC-ATTGAGGGTTCTGGCAGGAATTAAGTTAAGCACCCTACACCCCCGCCCTGCCCAGAACCAATATCTCCCACACCTGTCAACCATCAAGGCTGGGTTTGCCAGGAACCTAGGAGTGAAT-GGCATGGACGCAGCTGTGGAAAATTAGAGTACCCTGAGGAGGTCCAGTGTGAAAAATGGGAA-CTCTTCA-GTATCTCTGCAGGACGCAGACTGATCC-CAGGCAATGATACTACATGAAAGCAAGAGTGGGGGGAACGTCGGAGTTTTGAGCC-TGACTTTCCCTTAGGAATATATAATATGTCAAATATTAtgtgtgcttgtctttgtgtgtgtgtgtgtgtgtgtgt-----gtgtgtgtgtgATTGACATGAGACAGCAAATATATATGAATTTAGAATACACATATATTTATAATTTCTAGGAAGTGA--TTGAAGA-AGGGTTATACTGCTATAAAACCTTTTTCAGACAT-TCCCATCACAGAGATGAAAAGAATAAAATAAGTGATGTGACAAAGCTTTACAAATTTTATAATGTCCTTACTCCAAAATATATGCTAATTACAATGTGGCAATAATACACAGTTGCTCT
s HiC_scaffold_1 134285870 2588 + 233722169 AAAAGACTGTGCGAAGATACC-CAACTATATGA-TAACTATAAAAAAGCATTATAGTCAGTTAGAGAAACTATATGctatatgatttcatttacataaaattcaagatcagaaaaa-----atattctacaaaataaagaGTATTGGTGATGTTAGAAATAAGTAGGTGGATTAATAGCAAAGGAGATCAAGGAAAAATTCTGAATGACAGAAATGTTCTGTATCTTGAAGTTA-TGAGGAGGATTACAAC--AGCATCGTCAAAACTCATGtaaaagtatattta--ttattCTAAGTAAA-------GGATGTAAAAATAACTTAGTTGAAATAATACAtaccatttaaattaatgcaaAGTAAAAATTGTGATTTGGGGCTTGTCC-----TTTTTATAAGACCTAATTCCTT-CTATATCAGATGAAGAAGAgtttaattagaaaaatttaagaCTCTCTtcattacataattttaaataaaat--------ctcatAGTTTTCTCCCTGGAAAG-GAAGCtt---gataaaagaaacagatgatgATCGTTGATCAGGTAAATATTCTGATTCTTA--CAGTCATTTGTTAGGTAAGCAGATTTTCACCTCATATAATTA--ATTTCTTCTTCTATTAAGCTAggacaaacat-atatatataattgg---ttCTATACTTTTGGTCATAAGAAATCAAATTTGTAACATGGACGAAA-GTCTTTGACCCTCCATAGATTCTCAGTTTATATAAATTCCCCT--CCTTTCACCAAAAGAGAACTTCAAGATTCAACATTGAAAATAAAGG----TAGAGTCCCAATTATGTACATTTGCCAATACAGTCTTCAGTGAAGGCATCTGAGATTTTAGGAAAGATTTCTTCCTCTGCTACTCACTTTTTCAGATGCACTGAGCACAACCCCTGCCAATGGGGAGGAGTTGAACCCTAGGAGGGGCGGTGATGCAGGCAAGAGGGAG-----TCCTCAGGGAGTCTTCCTTTCACACTGGTTTCTCCTGCTGAGAATCCTCA-AGATCTTCAACAGGGCTGAGCCTTATGAAT-CTTTTCTTGCTCTCTGACTCAACTAAAGGACTCCCAAGTGAGCTACAAAAGTTATTTAATGCATTTTCATGGATATCCCATCTGTATCATTGAATTCAG-GGCAGATCCGGAAACACACGTTTTTAAAAACCCTA--CTTTGTCTTTACTTCGAttactttttttcccctaaattagaaaag-aataaaataaagtaaggtCCCTAGCTACTTCTGTTTATGGACACACTAAAAT---------ATAGAATGATTAAGTGTCTTGAGGGCCCTGTGGGATACAAAATGTGACATTCTCTTAAATACACAATAGTATTTT-TTTATGGGCAAAGACTTTAGAACTTGTATCCTCCATCATGAAGGAGCAAAAGAGTTTAAATGTGACTTAAACAATATGCCAAACCAGGTCAGAAAAAGGTAGATTTTTCTAAACTCAACTACCACCTATGGACATAGAACATTT-ACAATGCATGTATCAGCCAACCACTGCCAGTTGGGTAGTTTAAACAACTCCCTTAGGGCCAATTTAAAAGGGTAAACATGAGAGAGGCTTTTATTAATGCTTTCTTTCATCACAAAAGCAATTTCCCACTGTCATTTGAGCTTTTTATGCTGGCCCACTATGAGCACAAGCCACTTTAGTTTGTCTCTAACTGTGCACCaagcagaaaagcaaacaaatcaaataattaaaaacagtcAAAAACTGTACCACTCCAGA-TAGCTTGATCTtcttgaaaaattttataaagggTTCCTATTTCTAAAATGT--------------------------------------------------GATAATGTGAAGGAGGATCAGAGGAATGATGT------CTTCTCTTCTTGAAATGAGCCAGACATCTT----CCTTCTGTA----GATGTTGAAGTGTCTCCTCCA----GGGCTCCTGGATGAGGAC-------TTGCACACCTTCAGACGTCCAGTTCTAAGTATCCCTAACTATCATCTGGT-GTCCCATGCCTGTAGCACCAGAATGCTTTCTGGCTGA-TTAAGAAGACATACCAGTTGATCATAGTGAAAGATGAAGATTATTTCTGTTCAGGCAAAAGAGGTTTCTGGCAGAGCTAGAGTTA---ATTTTATTCCCCT----------GAACCAGTAGCTCCCACACCTGTCAACCATCAAGGTTGAGCTTGCCAGGAACCCAGGAGAGAATAGGCATGGGCGCAGCTGTGGCAAATTAGAGGATCCTGAGGAGGTCCAGCGTGAAAGATGCGAAGCCCTGCATATGTCTCTATGGGGTTTTGACAGGTCCAAAAACAATGCTGCTCTGGGGAATCTCGAGTGGTAGGAGCCTCACAGTTTTCCTCCACAACCCTCC---------ATGTACTATGTCAAATTGTATGTGTGCCCCGATTCTTGTGTGTGCTGATGTATTTTTCATAAGGCCATCTGAGATTATAGCAAGGcacca---acatttaaattttaatta----------tttaaattgtaaGAAATGGGTTTGAAAAGAGGGATATAATG--AAAAAATACCTTACAACCGTATCTCACACCAGGTACAGGAACCATATAATCACTGATGAACCAACATGTGATGATTTTCCTAATGCCATTCCACTAAAGAAAACACATGCAACGGTATTGCAGTCAtgtgtagatatttt

a score=24202
s chr3           147591658 1185 + 160039680 AAGAGAGAATATAATAATA--------GATTACTGTGCTTTCTTTCTGCACTGAATAAGA-CCAAAAGAAAACTGGGGGCAGAAATATGTCCCTCAGCAATTAGACAATCCCAACACATATTTTCTATAACGAAACAAAGGAAGGGAAAACATCTATCTAGTAGCCTGT-AGACCTAGTCTTACTGATTGAAGTTTACTTACAGACT--CACCAAACCCTGCTTTAGTGTAAGAGACACAACCATAGAGAATTCAAGTCAAACCTCATTGTGGGTAATCTAAAACTCCATAATTCCACGGGGTCATAACTTAATATCTCACACACTACCACCGTCATTAATAGCAAAGATATAATAAAATCCATCCTGAGAGAGAATGTCTCCCCGGGCTCTCTATTTAGATGCCAATGTTTTG-AAAGAGGGGATGAGAGCATTTGATGAGATAAGCATCCGATTTGGCTCCCCACTGTCATTCAAAGCAAATATATAAAA-------------TCGTCATCCGAAAATTTAGGGAATGTACAGCAGAGAATTGACTCAGCAACTTTTTTCGATTCATCAAAATACTCTAAGCATCTTAAGAATAGACTTTGCTGCAATTACAGAGGCTATTATTGGATATCACAGAACCCATCTCATTCGGATCTGCAGAGTCTGCAAGTCCCATTTCACAGTCCTCCCTGGGCCCTAG----AGTATGCTGCCTGGGTCCTCA-GTACTCAGCAAGATCTATGGCATGGCCTGCACAATAGAAAGTGTGTGTTGTCACTCTTTTCAATTCCACTGACTCTGACTT-----CTGCTTCTGCCCACAACTCTGGACTCAGCCATATGTTTCCTTGTTTATTCAGTGACCATGAAGCCCATGTGCTATCACATGGGAATGCCGGTGTTTTTGATGTGTGTTTTCAGTCACCTTGAAATCCACACTGGACAAGCAATGTACTTCACATATGCTTGTGTGAAGGTA--GAGTTGGGAAAATTTATTCC-----------------------CAAACCACTTGTGCTCTAAGCACACTATATTTATGAATTTCCTCTCCCTTGGGGTGATCCT-TACTTCTAGAATACAAAAGCATAATTGACTAATATAAAGAGAATATCAAATTGTAGTTTAAA-------CAGATTACTTAAAGGGAAGAATAGCCCAT-TTGAATCTTGGT--TTGACTATT----GTTTTAAACCAATATTAACTATGGGGCATTTGGGAGAAGTCTCC
s HiC_scaffold_1 134288845 1104 + 233722169 AAGCAATAATAGAATAATAACACTGTAGAACATTGTGCTTTCTGTTTGCTCTGAGCAGGAACTAAAAGAAATGTAGGGACAGAAAGATGCGTCTTACTGATTTCACAAAGCCAGCACATCTTCTCAGTGAAGAcgcaaaaaagcaaaaa-----tatctaATTGCTTGTGAAAGTTAAGCCTATTGAC-ATAGTTTCATTATAACCTACCACCAGATCCCACAttagtttaaaaaatgtaaccataaagaatgaaaattaaatgacaacTTGGCTGATCAAAAGTTCCAGAATCTTACAGGATCATAATTAAATGTCTCATATGCTATAACCATTACTAATAGTACAGATATAATGAGGTCACTTTTGAAAGAGGCT----------------TCTCTAGATGAGAAGTTTttgtaaggaaagga--aaaaaaatggatg-gataaataTCAGATTTGACCCTGCAA-GTCACttaaagcagattttaaaaaaattttttttcaattgctATTTGAAAATTTAGGTAAGTTGCA-CAGATAATTGATTTAGAGACTTCTT--GATTCATCAAAATACCCCAAGCATGTTAAGAATAGCAGTTGCTTTAATTGCAGTAGCTATTATTGGACATTGCTGGACATATTTCTTACAGACCTGAAGAGTCTGC-AGTCCCGCTGAGCAGATCTAACTCTGAACTGGAAGCAGTAAG-----TGGGTGCTCACAGACTCAGCCCAAGC----------------------AAAGTGCACAGCCTCACTTTTTTCCAGCACAC--ACTCTAGCATGAGCACTGCTTCTG--------------------------------------------------------------------------------GGT-TCTGTAATGTGTTTTTTCAGTCACC-TAAAATATTCATTAGATGAGCAATTTATTTTATCCATGCTTGTGAGTAGGCCATaagttgg----atttttttcattgtcAGTACTTAAATTCACTGTAAACCA---GTGACCTAAATATattatatttgtactttttttttcctctgagggcATTCTCTGCCACTTTACTA-AGAAGTATAATTAAAT------TAAAGAATCTCCAAATGGAATCTTAATTTCCACCGAATTGTTTATGGTTAAGAATTGTTCATACTAAATTTATGTGGTTGACTACTAATGATCTTAAACCAATGGTAACCAACAGGTATTTTG--AAAATCTCC

a score=20308
s chr3           147606941 1423 + 160039680 GTTTAAAAAATTAATCAAGAAGTTCACTAGCATAACTTTGTATCTGTGCTCTGTTCTGCTTCATGTGTATAGAGTAGTACTAGCTATGTATAGTGTAGTACTAGTTATGTACAGTGTAGTATTAGTTGTATATCTGTTGGGATCCCAGAGGATATCAGTTACTGAAATTCAGGGAATACATGGATGCGTTTAGCAGTAGTTCACTCATG----TAGCTTTAATCTGAACGGTTGGTTATTTCAAATTTTTTAATTT--GACCACATTATGATG----TTTTATTGTTAGAATTTAT-----------AATTGAGATATAGTAATTTA------TTTTCTCTCTTTAATAAAGTTAATAGTGTGTGTTAAAAATGCAATC---TTAGCTGATTTGAAGGAGCACCTCCAATTTAGTTACATATTAAGTCTAATTTGATAAGGCTGACTTTTATCATA--------GTTCCCTGAATTCTGATATGAAATGGTACTAATTATGAAGGCAATTCA-TCAACACCGTTCACGTTCTTCAACCAAACCTAAAGCGTCTCATGAATACATGTGAAGTCCTTGCGACTCTGGAGAGAGAAAACATAAACACATATAATTCAAAGCAATTAATTGCATGTGATGAACATGCAACTGAACTCAGAATGTCACGAGCACTC-TGGCCatcaacctgaattccaaaaagt------agcaaatcagccaagtggtggtatcgttccatacctctttggtagtgagttcagtgtgctatccacatgAAGCACAATGGGAGCCTGTTG---ATGTGTTAGGCTTCGGATTGGCAG--AGTAAAATC-CAACATTCGCTTT------------GATCATCGCCTTG-----------CCCTGCAC-------TTACAACAGTGGGGCTGAAACGCCAGGTAACTATTGCTTTGTGGTATTTCCATGCTGATT-CTATGATATTGATA--TTCCAAAATTCTGACTTACAAGA--CTGTACAGATCATATCTAAGATCAATACTG---------TATATTTATGTTGACCATGCTATCTATCCAACTAGAAAATTTTTCCTTAAATAAAATTTCC---AATGTTTGTTTTTTCTTTTGTA-----------------------------------------TTTATAGCAGTACAAGAT-ATCAAGTACCTAATTTCTAGGCATGTAAATGTTTTGTTCTAAAAGAAACATGTATTTTGAGTACTTTTTTGGTTGTCTT--ATCAGAAATATTTTCTAATTTC-TCTTTTGGAGTGAATTTTGTATTCA---AAATATACATTGTGTGTCTGTGGTGGGGAGAAGGTTAATATGATAAGGTTTAAAATATCTTGATTCTTTCCAGTAACTGAATGTTGTCTGTCACAC--------------ACAAAGACAGGTGTGAGTGCTCAGGAACACAGAATCCAAACTCAACAGA----------TGATATATGGACTCTG--------GATATAATTCATATATGATTGTATATAAATAAATCTTCTGTATTGCCTCTCTGAAAAAATAATTTAGAAATGCCAAAAAATAAAAGGACtaa
s HiC_scaffold_1 134308717 1487 + 233722169 gtttaaaaatgtaccCAAGAAAGTCAATTGCacaaat--atatttgcaaattgttctaatt-----------------------tatatatgttctaatactaattttatat----taatttaaattttatatgagtT----------------TCAGTTATTGAAATTTCAGAAGTAGTCTGAAGCAAT-AGAagtattttacttattatttttgctttaatttaaacTGTTGGtgattttaacaatattaatttctGACCAAATTATAGAGATCATTTTATTGAttgagtttatcttttttatatagtTAGGATGTAGTAATTTAGTTATGTCTTGTCTGCTTAATTGTGTTAATAATGTATGGTGAAAATACAATCATATTAGCTGATTTAAAGGAATATCTACAATTAAGTTGCTTATTATGATTGATTGGATAAGACTGACTTTTATTTTAGTCTTCTTGTCTTCTgaattttgatataaaatgttACTAATGAATAAGAACATGCACTGAAAAAAGTTTGTATCCTCCAACAAAACCTCAAAGGTCTAGTGAATACATTTAAATTAATGTTGagcttaaaaagataaaatataaatccATAACATTT----TAATGCTTGGTGTGTAAATAATGTGCATTTCAGAACAAAATTTTGTAGTTAATCATAG-----AATATTTACTTTAGAAAGTaaggaaaatacatgaaataagtGATATTATGCTTCCCTTTCTGCTCA--AGTCAGTTGAACA---CATCCACA--AAACACAACTAGAAAATGTTGGTAATATGTTGAATAGAGCGCTTACAAATAGTAAAATCTCAACAAATGCTATCACGTTCTTCACAATCATTGGCATGATCGGCCGACTCTCTGCACTGGAGTATCATAACAAAGTAATT-------CAAGTAATAGATGTTTTGC-ATAGTTTCATTGTGATTActaaaatattagtattttttaaaatactgatttataTGAAGTTTCATGAAACATATCAAACATGAATATAGTTCTAAATCTATATTAACGCTGCACATAACTTTTATGTAATTCCAAAATTCATCCTCAAGTGAAGTTTTCTATACTGATTATTTCATcatttatatcatatataaaaaCTTTGGGAAATTGTATATTTGAAGAAATTTCATAgca-tatgaaataataaaacattcaATTTATTGCCACTTAG--GCTTAATTTTTGAAG-ATCAGATATTTTGATCA-TTTCAGAATTCTCTttgattaaaaactatttttaatttcatctttgtgTCTTAGTTT--TATTTAAGTAAATATGTATACCTTGTAGATAGTGTGAAGACATTCAAT----------------TATCTTGATT-TTCCTGGTAATCTAACATCGTCCTTAGCACAGACACTCGCTCTTAAACAGGCACATATGAACTTTCAGATCCCC--AAGTAACACCCAAAagagtcattattttaaaata-gagctTTGATTGAAATGATATAACACatcaataa---tatttatataactcctaag------------gaaaaaagaatttagaaaagct---TAACAAAAGAGTTAA

a score=55200
s chr3           147611111 2004 + 160039680 TGAATGCATACATTAAAGCTGCTTGTTCCGTACTACGTGTTGAAAGGTATGTT--AATTTTTCCCATTACAGGAATAATTTTACTACTTATGTAT-----TCTACAATATCATGTTACATACCTAAAACCCATGTAATAATGTG-ATTTCAAACATAAAATAATCATTGGAGTGAATGCCACACATGTAAGCAAACTGTTTTATTATCTATTTTATTATCCAGAGAAAAGAT-TTGAAACTATTCAAATTTAGAGAATACTTTTGAATGTGTGG---GATTGAGCTGTACCAAGGACTGCACAGAAGTCAAACACATCCACCAGGAAAGTTAATATATAGACCCTCTGCAAACT---TTACACTCCTACATTTA--CCTCTGCCTCAGACATTTCATTGCTTTAACGCCTACGTTATAGAGAATTCTAAATTGCTATAAAATTACCAACACAACAAAATG----------GATAAACAATGTTGTGAGAAACTAAAAAATAATGATGCTCCTTTGAAGGAAATCTCTGTCCAAA--CTTTGTTTT--GTTTTCTTTACTCTGAACCTCTAAGGTTTCCAATGAAATTTATATCACGTCAAAAGTAAAAAAGAAAAGAAAATACCAATTCTTTTCCCCTCATAACATTCATGAATAAAACTTCCATCTCTCTCACTGAGGGAAAGAAAAGTCAC--TGATAATAATTCTTAACTTTTCCCCCATGAGACTTCGAATACAAAAATACA-ATAGATTGGTATAACGAGGCAGATTAGGGTAAA---------------GGCAGGTGATAAGAATAAT----TATTCGTGCTTTACCACTATTGCTTGTTAAATAATGTTTATTTAAGCCAGTGCAGATAAGTAT-AGTTGGAAAGAACGCAGCTTGGTAGGTTAAGTTTCCAGTCGTATTCCACATGGAAAAGAACCATAGAAAATACGTGTGATATATCGTTTATTAACCACACACATGGAAGGAACTCTGTTAGAAAACATTTGAAGTTTGTTATTGATCTGTAGTCAGAGA--GTGCTGTGAATAAGCTTATAAATAACATTCTTTAATTGTAAAAGATAGTCCATGAGCCAATTGGTTCAAGTCATTTAAATATATTACATTGTGCCTACCTCCCAGTAATTATACCAATTAAATCAAAGTACCATTTATCAGGGTGCCAATTAAGTAAATCCCACACTTTCTGGAACTTAAAAAAAATCAGGCTAAATTAGA----GCAAGCAACCCTA-TGTTTGCAAGTA---TAGTTGGATCTTGGTCATGTAAGATGAGAGTAATTTAGATCATGTT---------------TATGGTTTTATCTTGCAACAAGTA-GCCATTATTCATTATTTCTGCTGC--CATGTCTACATGAAAGCTAAGAA---------------AGTGTGCCTTGAATCTGATCTTGAGTTTTGTATGAGAGCTGGTTTCAATGTGGCTTTTTCTTTCACTGCT----CTCTGAATCTAAAGGTTAGTTCATATAA-GAGTCTCAGCTTGGTAAACACAGAATGCTGGCTGATTAGTGTGTGGGA-------TTCTCTTAATGTCAAAAATTTC-AGAAGATGAAAATGATTGAATTCACAATTAACTGGAACTTCATAAAAATGTAAAAATCTTTCACATTTTTACAGTAAATATCTATTTTCAAATGAAT---TGTAATTATTCTTTAATTTATGAAATCTAAAGAAGTGTTCTAATGTGTCTTTTAAAGA--GCCAATACAAAGGTGAGATGTTATTTAAACAAATATTT------------------------AGAAATTCTCCATAGACCGCCTGCTAGTGACTTCATGTAGTGACACCATTCAATAGTGCACCAGGCTTGAAAAGTGCAGTGAAATCAATCTTC--CACCGACCTTCCCATTTATGTGTCAGCACTGAGAACTGACATTTAGAGCATTATCATTATATAGTAATAAAATGTG----AGGTGAA-AAAGCTAAAACAGAACAATGTGCTGGAATATCTCTGAACTTTCCCTGCAGTAGC-------TAAACTGCCATGCCTCTGTGAACATGGCTTGTATATCCATGGACTCAGGAAAatatttgccactgctaaaattcacagacttg
s HiC_scaffold_1 134311646 2096 + 233722169 TAAATGAATGGATCAAAG----TTGTTCCTCA---------GCAATGTATATTCTAATTTCTTCCACTA-GGTAATCATTTgattataaaagtatattttcttataatattttGTGGTAcactttaaatatacaaaataaaatttatttttaaaataaaatatacgtTGAAATTACTGCTAGATGCTTGGGGAaaccatatt-----taattttattttccacagAAATGATCTTAAAACtgtctaaacaaacaaaatactttcTGAGATAGGGCAAGATTGAACCACACAAAAGATTGAATTGCGATCAAGAAAATTCACTCAGGAAGCCAATGTAAAAAATTATGGTAAACTGTTTTTAGTTTCTCCACTTAAATCCCTACTTC-----TTTTACAGTTTTAACATCTACTTTAGAAAGAAGTCTAAATTACTGCAAAATTactaacagaataaaatattGGAGAATAGACAAATAATTTTgtgagaaaattgaaaataataatgctcttctgaagaaaaactctttttGAAgactgtgtttttcattttctttcttatgaaTTTCTAAGGATTCCATTGAAATTTATGTCATGTcaaaagtgagaaataaaatggaatagcTATTTTTTCCACCTCATAACTATCATGAGTAAAGCATCCATCTCTCTTGctgaagggaagaaaagacaCCTTCATAATAATTCTTACCTTTTTCTTCATGGTCCTTTGCATCAAAAAAGGCAGATGGACTATAATAAAAAA--AGAGTAggataaaaacttaaaatattttgacacGTGATTAAAATAGTCGTATCTTCACAATTTATCATCAACCTGTAACAAACAAAATGTATT---GGTAGCTCTGATAAATTTTAGTCAAAAATAAGCTACCTTCATTTGCTA--TTTCCAATATTGT-CTAAATGGATGAAAATCACAAATAACACCTATAACATTCTCTTTATTAACTATAGATCTGGAGATAAATGTACTAGAAAGCATTTGGAACTGGTCACTGATGTGTAGAAGTAGACTTTACTGTGAATAACGCTTTAAATAATactgtttaaatgaaaaagatattcCATGAGCCAATTGGTCTGAGtcatttaaatatattacattatGCCAACCTCTTGGTAATTACACCAATTAGATCAGAGAACCATTTATCAGCATGCCAATTAAGTGGATTTTACAGTTTCTgggacttaaaaaaaa--agtctaatttaGACAGGTCAAGCAACTCCAGTGTTTATGGGCATGTTAGTTGACTCTTGATCATGTAACAGAGCAATAATTTAGCCAGTGATTTCTACTCCAGGTACTAGGATTTCAACCAACAACAGACATAACTGTATTAATTCATTTTGCTTCATAATTTGAATTTGAAAGTTAAGAACTTTAGCTAAGAAATACTG-GCTTGGAATCTCAATTTTAACTTTGTTTAAAAACCAATTTCGATgaaccttttccttt--ttgctgatgCTTTGAATTTAAAGGTTAATTTATTTAatgattcctaagtgtttaaatatgtaattttggTTTATTGGAATGTgcgagtttttttttctttagttttattcttttcaagaaGATACAGCAGATTAAG-----AATTAATTGACATTCAGTAACaatggaaaaactttttaaatgcttctaataaaaatata-gataaaaggaATCACTgcaattatttcttaatttttgaaatCAAAAGAACTTTTCTAAAATG--ATTTAATGACTTCTAATAAAGAACAGACATGATACTTGGATAACTGTTTTAATAAGTCCTTAAAAGCAAGGTAAGAAATTATTTACAG--TGACTCTGAGTGACTTTACCTAGTGACATCATTCAATACAGGGTAAAACATg-aagttacagaaaaataaatcttcaacattcactttctcatttgttt-------tttagaACAGACACTTAGaacattaaaattatatagaaataaaatgtataatacatgaaTAATTCTGAAACAGAACTGT-TGCTAAAAAAGTTTCCAACTCATTCTTTTGTAGCTATTATTTATACTGTTGATCTTCTTT----ATGGGTTCTGCATCTATAGATTCAGGGGAAAATGTGTCTATGC-AGAATATATATAATTG

a score=44131
s chr3           147617428 1161 + 160039680 AGACACCTATATTATTTTGT-GCCAGTAATGAAATAACTATAGGAAGTTTTGTTTTGTTTTT-TATAATAAACATCTAATATAAAGTAA-TAAGTAAATATTTATAGGGTAAATATTTATTTATGAGAAGACATAATCATTTTAGGATGAATTATTGTTGAGACTAGATGAATCTGATTTTTAAATTGGGAAATGAGAGCACAGTGACAAAGCTCTTTACATTTTTTAAAAGTTGTGATTTGA---TCGTCTAAGTGACTGCTATTTATATACCTGTTTAGTACTACTAATTACTTTTTATCAAGTTCAATTAGTGTGATGGCTAAATCTCACAATCATTGTGTGCGGCTCCACCAGGCGCTCTGGGAGCGGGAATGCAGGGGATGTATTTGTGGTGAAGCTCATTTGCCTTTGCAGATCTCAACAACTGCTGGAGTATCTGTTTTCTAGCAATTAGGCAGCTGCTACTTAAAATCCATAGTGGTAAATGCTGGTTATGTTTGGTTTGGAAAGCAAGTTTTGTTTTGTGCA-CATTCTGGTACTTTGCAATGTGTTAATGAGGATGTGTTGTTTCATGCCGTCTTCTCGACGCTACTTATGACCTTTCCCTCCTCATCTGGCTGGGGCATGGCTTCATCTATTTTCTTTCCAACTTTTGTCTTTTTCCCAGGATTTGGCTTTGAATACTTTTGATTTTCCCTTGTTGAGAGTCAAGTCACAATCTTTAAAATGTATAGACCTGTGGAGGAGTCTGACTGGGTTGAAATATGTTGGATAATTTATTACCAAAAGCTGTGTATGAAATATTTAGGAACTCTATTTGAGTTTCCTAAATAGTTGGAGAGTTGGCTTCAT-----------AGCATGGATTGGGAAAACTGGCAGACAAGTGGACATTAATGGAGTGTAGACATAACAGCACTCATGCTGTCTTCTGTACAA------AAT----------AAATGAGCAGTTTTGAGCAAAGAGTTGTGCTTTAGCCATGTGCTAATGACTGCAGTATGTACAAATCACTCATAAAATATGATGCAAGCATTGTGATTTTGTGGAT-----CACA-TTCTAAAACCCAATTTGATTTGCTTATAGTAATTATATAAGATCTCAGCCTACATTCATTGTTTGAAAACTGGCTGAATATTAGAGATGACACAGGCAAACCAAATGCTACTGCAATA
s HiC_scaffold_1 134322072 1151 + 233722169 agacatc-atgtTACTTTGTTATCAACAATAAAA--ACTTTAGGAAGttgtaaattatttttgcatCACAAACACCGTATAAAAATTGAGTGTATAAATATTCATTGGgcaaatattt-ttcataacaaga--gtatcattttaaaatcaattattatTGGTGCTcaattaaacaaatttttaaattgtacaatGAAAGCACAGTAATAAATCCCtttataatgtttaaaa-ttatgatttaacAATCATCTAAGTAACTGCTATTTATATACCTGCTTGCTGTtactaatta--ttttataaagttcaATTAGTATGATGGCTAAATATCACAATCATTGTATA--ACTTAACTAAACACCATAGTAGCTGTGATACAG---ACATACTTGTGATGAAGCTTATTTGCATCTGCAAATCTCAACAACTGCTCAAGTGTCTGCTTTCTGGCAATTAGGCAGCTGCTACTTAAAATCAATAGTGATAAACTCTTGTTGTGTTTACTTTGGGAACTAAGTGTTGTCCTTTGTAGTTTTCTGATACTTTGCAGTGTATTAATGGAGCTACTCTGCTTCATGCTATTGTATCACCACTACTTG-GCTCCATTTCACCTCAGTTAGCTCTTgcattacttcattttttttttttccatcttctgtCTTTTCCCCAGGCTTTAACTTTAggtagtttttaatttctcttttcaagaGTTAATTCACAATCTTTAAAATGAATAG--CTTTGGA------------GTTTGAAATATGTTGGAT-ATTTATTCTCAAAAACCATATGTGAAATGTTTAGGAGTTCCATTTGAATTTCCCAAATAATTGATTAATCAGTTTCATGGAGGGCACAAGGTATGCATGATGAAAACTGGCAAGCAAGTGGACATTAATGGACTAAAAAGATAACTGCAATTAAACTGGCTTCTGTACAATTTAACAATCAGTACAGcaaaaaaatcagttttcattGATAAGTTG-----TATCTGTGTGCTAATAGCAGAAATATGTACAAAGCATTCCT---ACATTAAACATGGATT---ATTTTGTGATTAATGGCACATTTTTAACACCAAATTTTATCTTGTTGAGgtatatatgtaaaatgttttaataga------gtagaaaaattggtttaaaaatagaaat---atagttTATTTGAATGCCATTAGAACA

a score=30458
s chr3           147642611 2064 + 160039680 AAATATT-AAACTATTTTTAACATTT------TATCAATTTTAGCACTTTGTACTAAACTCAACACAAAAATGGTAAACACATATGTTAATTAAGTTTATTATATATGGAGTTCACATCTCTGGTTTCATCACTCCTGTCTTAGAGGCTTATATCTATTTGTTAGTTTATCATCAGTAGTGGGCTATCTCTTCGCTTTGAGAGCACCAGTACCTCCACTCCACATAGTCAGCTATAGCCAACTTAACCACTTTGCCATCACAGGCTCCT-ATACAG--AGCTCCTGTGTGGGGGTGGTGGAACACTCTTTAGGTATAGATATTAATC-----------TGCAGCCAAGG-----GAACCACCTTGGTTATTTGAGCT-GCTACTGCCTCTCTCCCAAGGGCTCTCACCTCATCTCCA-CTCCAAAAACCAGCTGATGGTTACTTGT-CCCTTGCCATTAGGAGGGGTCAC--ACTGCTGAAGTCAGGAGCTTAAACCTCTCACTCTGAGGACAACCAACAATGTCCTCCCAACCAGACCTTGCCCAGTGACT-TCCCACACCTG--CATCTACCTTA---GTTTCCCCGAATCATGACTGCTTC----TCTTTTTATCAAAGATATC--------AGAACAT-----CCACCTGTATTTCAGTCC---AGCCTAGTATTTCATCTGCCTCTGGTTAGACATGTTTAGCAGAGGAAGTTTTAACTTGCCAGTTACACAGGTAAAAT------TATCTGCTACCAAAGTGTGCCCCCTTTCTGAGTTCTAGAAGGCAGAATCCTGGCCA---------------CACAGGGACCCAG----CACTCTTGGATCTAGCTC-TGCTTCACCTCATGGAGTAGACTGCCTACCCTGATGGTC--AGCTTCTAAATGTCATTCATATA-GGCTGGTCCTTCCTCC--------CTCTAGCTGCTCCTCTGCATCACATCGGATTTCAGTCTTTG----CAAATCCGGGA---TTTGAGGAGGGTGCCTTATTTTTGGTCTTGTCTTCCTTCTTAGGATTTTACAGAACTGTCACAGCTAGACTGTCTTTTCAAAAATCCAAATTTGCTGGAGTGACTTCACAAAACTTTTCTCTGCCTGCTTCCTGCTTCC-TGTGGCTTCCTGCTGCCAGCCTCATTCATTTG---TTAAGGGACTCAATTCTTTCTCTCCAGCAGA-TTCTGCA------TTTATAGGCTAATGTCTCAGTAATCTACACCACC----CAGTTTCCAGGCTTT-AGCACAATCTAATGCTCAATATATCTAAAATGACAATGTTATAAAAAAAAAAAAAC--------ACTGTGCATTGCTTCCCCAGGATG----CAATGTTTCTGATTCTCCCC--TTGACCTTTGCACTTTGAC-----------CTTTCCTCAGATGCTGGCATAGGTCTATTTCCTT------------------------------GTCCTTCCCATTTGGTTGAAAGCACCCAGAGTTTCTCCCAAGGGATTCTCATGGCATTATATGAGGTGATTTTTCTAAGGACTCCCTATACAATTCACCTTGAAAA-GCTCCCAGCCGACCATCCACCAATCTTTTCCAATACACTTTCCATTTAACGGTTTTCATCTTTTTTTTGTATTTCTAGATGAAACTCCTGGTGCTACTCCCAAACTCATTTTTCTGAAATAATGTTTAAAAGGTAATTTAAATATTTTGAATCCCTTAAGA-----AATACATACATGTAGAGAATATTTATAAAGCTTATCTTCACAGTGTACTTTTTTGTGAAAAATACTTGCAGGATATTATCAGAAAATATGGTATCATTTTGTCTTTCTCCATTTAAAACTCACCAGTGATGCTCTTATACTGTAAGCATGTTCCAGGTGTACA-----CATTTTTATAAGAGTAGTTAATTGATGAAGTATTTTTATAACAAGGCATAAAGTCACCTGGAAGGACAGTATTTT-AAGTTTCTATTTCACTATCTGTGGCA-ACTTTTCAATTTGGTTTACTTTATAATCTGAAAAGAATTGGGAG---------------------TTTTTTAAAGACAGCTTTTATTGCAGAGTTTGGACTATGAAAAACAAAA-----------------CAAAACAACC------------ATCTCTGCAGTCAGCACTTCCTGGAAAGTTGTGGTGATGGTGAGCCTGCATGGGGAAGAAGAGCAACCATGTC-TTCTTCC-TTGCTGTAATGTCTCGGTCTGGCCAAGTGGCAGG
s HiC_scaffold_1 134346780 2194 + 233722169 aaatatttcaattttatctgACATTCATCCTATACCAAATTTCG----TTAAACTGAGGTCAACTCAATAGTGATAAATA--Gatgttaattaaatt-attttagatcAAGTTTATATCTCAGGTTTTAACAGTACTATATTGCAAACTTACAACTACTTGTTGATTTACTT---GTAgaagggtgattttttttttataaaacactgTT-------CTCTTCATGATTAACTATAGCAGAATGA-----TGTGCCAG---AGactttttatacatttgtatcctgTGTGTATG----GACACAAATATCAGG-GTAGAGATTAATCAAACGTTGCTCTGTACCAAAGATTGGAGCACAGCACTGGTGA----AGCTCGCAATTGCCTCTTATTCAAGGATTCTTGCCTcaattctgtctcagaaaaccattCCCCAGTCTCCTATGCACTTGACATCACAGAGATTTGCCTACTTTTG------------TAAATTT---------AGGTAGATCAAC--TTCCTGCCAAAGCTGACCTCTTGCAGTTACTCTCCTAGGCTTGTTCCTGTATCTTATAGAAATTTCCAGATCTTGACCCCTTTGTTTTCCTCCTGTCACCATCTTCCTTTATGTAGCACTTTGTCCCCGTCTGGGTTATATTCCCTAAACCTACAATTCAGCCTGCTT-TCACTGCATGTGTGTCTCACAGAAA-TGGTAACTCG--AGGTTCACCATTGAAATAAATCATCTTTATTATCAA-TTCTATCTTCTTTCTCTGTTAAACAAATAGCATTACCAATCATTTTGTTGACTTGGTCTCAAAAACCTAAGTGACATCTGTAAATCTCCCTTGTCCTTTCCCTCACACAGCTCATCACTTACACTGTTGTTCCCACCTCCTAAGTTTCTTTCAAATCCATCTGGCCCTTCCTCCTGCTACCACTCCAGCAGCTCC------------CGGTGCATAGTCTATGTGGCCTACTGCAGTAGCTTTTTAAGTGGTCTCACAGTATCCAGTCTTGCCTTCCTCCAGGCAGTTCCGCAGA----TGACAACTAGCTTGACctctaaaaattacaaattagCT----------CAAATTATATTCCTATGCAAGATATATTCCTCTGTATGGTTTCCCATATCCATCCT-AGAAATTTGAACTTCTGTACCCTAGTTTGTGATCCTGTATAGAATTTTGCAGTTTACTTCCTAAATTAGTGTCCTGTTAGTCTATGCCACCAGCTTAATTCCAAAGCTTTTAGTCTGGTTGAACTTTCGGTCTTTCTAAATTG-CAATGATTTTGAAAGGAAtaacctcaaggccattgttcatCA-TTCCCTAGGATGAGAAcaggtttttttcttcctccagaCTGACCTTTCCACCTTCGTGTCTCTAATTGTTATCTTCTGCAGATAGCATaggttt-tttccttcttcttcagaGCTCTAATTCTGATTCAGACGTCCCTCCTATGTGTCTTAATGCAG--AGAATTTTCCCCAAGGGCTTCACGTGGAATTATATTTGCCTGTTTTCCTAATTACTCCCTACACAGCTCACCCTGAAAATGGTCCCAGCTGATCATCCATGAATcttttccaataaattttccatttaaccatcttcat-gtatttttgtaTTCCTAGATGAAATGCCTTGTGCTACTTCCAAACCTA-CTTTCTGAAATAAGGTCCAAgaggtattttaaatatttcagatccCATAGGATCtatattatataaatttagaTGGTATATATAAAGCCAATCTTTGGAGTAGGCTTCCTTTGCAGAACTGTTTGAATGACAGAACCACAAAATA-AGTATAGTTCTCTGTTTCTCCAACTACAGGCAACCAATTAAGTTGCAGAATTGCAAAGGCTCTTCAGGTGCAAAATGTGCATTTTGTCAAGAAGGG---GTtaataagatatttttatattaagttACAAAGTCACATAGAAGgacaatattttaaagtttcta-ttcACTGTCAGTGACATTCGTTTTACTTTTGCTTAGcttacaaattgaaaaaaaaaaaaaaaaaaaaaaaaaagaaaagttttttctCCCTAATTGCTCTCATTGCAAAGTTTGGAATATGAAAAATCAAGCTGTGTTCTCTCTGGTTCAATATCACCTCAAGTAATAAAATTTCTGCAATTAGCACTTTACTGACAGTTCAGTTGATGA------TGCATGAGACAGAATGGAAGCCAGCTCATTGTTCCATAGCTGTACTATTGTAGTATAACTAAGGGGAAGG

a score=15386
s chr3           147646377 1308 + 160039680 ATCACATCTAAGAAACTGGTTTCCTGTAGAGCAAGTAATTGTTTCCTTTTTTTC-CTTCATGTACATCATGAAAATATCCATGTTTATTTATAAGTTTTGCAGCACAATGTATTCTTAGATAAAGA--ATGAAAACTGGCCATGAGAAATATTTGAAAATTGCCTATTTTCATTTATA-TTTTCAGATCTAATTTTAGACTGT--GTACT-TCACATAAATTCTATGTAGAGTTCAG----CTCAAAGCACAGACCAGCACATAAGATTCTAATTTATTTTGACTCTTGGTTAACTGTCTTTTATTTATTTTTCCAGAGAAATTTACCACAATA-TTACATAACTCCTATTCAAGTGACATGAACATTTCATTTGTCTTTCAGACTAT----------------------CACCCAGAGCAAGGGCTATCACACACCTTACAGGAC--TCATGCAAAGCAGGAGTGTTG-GGAATTCCAAGTGTCCCTGGAGACACTGCCTCCCAATCTATCAGTTGAATGACCTCTTTGTGTGATGTACTTATGCTGAAA--CAAAGTATTGTGA----------------GAGGCACACACAGT-AGGACTGCACTTCT------------------------------CACAACATGATAATAA-GCACATTCGCAAAAGATCCAAGATGAA--AGACTC------AAGAGCAgtgcgtgtgtgcgtgcatgcatgcgtgcg------GCACATTCGGAAGCAACAGGACAGCCTCCTGGAGTTGGCTTGGTGAATTTCCTCACTTGCTTTACTCTGGTCTCAGGAGAGGTCTCAGTCCTTCCAGGAAGAGAAGTGACATGCCACTTTTAGGCAGAGAAA-GAATTAAGCATAGAAAGCAGCGGGAAGTATTTTTAAATTGGCCGTTTTTCCTCTTGCTCTCTTAACCCGTTTGTAATGTTTACACATTACTGTAAAGCCCTCGTT-CAGAATCCACTCAAAAACATTCA-------------------------------------------------------------AGTCACTT---------------------------------CTCTCTCTTTGTCTGTCCATCCCCAGTGTCTTCTCAGTTCCCACTGATAAAGTTCTCTCATCAGTTCTATGCCCTGCTACCAAGCACATAGAGCGTGTCAGGGTATGGCTTAGACTTGAAGCCTCAATTTTGGCAAAATGAATGTGTGTATGGTTTTATCGTATTTGGAAAGTTCAAATTGCAAGTAAAATATTTTGACTTAGAAGGAGTTTCTCCCTCTGATCTCTAGTAAATATTTCATAT-------GGCTACCTC-AGAAGGACTTGCAAGTGGAAGCTTATGCTTG-----AATTTTTTTCCCTAAGAACCCGAGTGTGGAGATATTTTTGCATTATTTATTGAAGTATAACAAG----CTTTACTCT---AAAATATTTTAATACTTTGATATAAGTGAAGGGAATTTTATATC
s HiC_scaffold_1 134349186 1427 + 233722169 ACCATCTCCATGAACCTGGGCTATTGCAAA--AAtggattgtttctttttctgctccTCTGGGACACCaaggaaaaattt-tgtttttataaaaataatgta--acaaTATATCCATAAATACAAACTATAGAAGTTTG---TGtgagatgttttaaaa---aatatttttaatcaaactTTTCTGACTTAATTTTAATCTATAGGTATTATTGAAAGAAATCTATGAAGAATTCAATCTCCTCA------------------------CTGATTTAGTCTCATTTTGCATTAATTATACTTTATGCATCTTTCCACAGTACTTTATTATAATACTTACTTCACTGGTACACAAGTGACCTGAGAATTTCATCCAAGTTTCAAactattttctctttgcttattaTATGACACCTACAAAATTGACTTTCATGCTTCAAAGAGGACCTTAATGCAAAATAGAGGCACTGAGGGACTTAAAATGTCA--GGAGACACTTCC-----AGTGAGCAACTGACT------TTTTTGAGATTCATTTATGTAGAAATGCAAAGTTTCATGATTGTATAATATTCCAAGATGCACATATAATCAACAATCcacctttattgtttttttgtttgttgtttgttgctagcacaat-taaaaataatgcatacactagaaaaaatcaaaattaaggaGACTTTAGGGAAAGGGTAGAATTATTATACTCACAAACTTGAATAAGCAAGTTgtgcataataaaattaaaagaaagtcgGTTAGAGTTGGCTTGATAAGTTTTAGCACTTTCTGTACTAAGATATTGAAACATGTAT--------------AATGAAATACTTCCTCCTTTTTAGCTAGAGGCATAAATCAGATGTAGAATGCTGTGA-AAGTATGTGAAAATTGATTATTCTTGCTCATATTGTGTTAACATATT-ATAATAGACATAAACTATTAAAAGAACTCAGTTGTAGAATTTACACCAAAGCATTCATcccagaatttgtttttttccagtaccggaaatcaaactcaagaccttgcacttgccaggcaggcatttatcccactgagctacatcgctgGCCCtggcacactttttttttgtctagctATAGTCAATGTGTATTCAAGGCAGGCTGGTGTAAGTAGC--ATAGTTGCTAGTTCCTGC----------ATATAGGTTGTAGAAGGATAGCGTTAAATCAAAGCCTcaaattctgtaaaataaata-GTGCATTGATTTACCAATTTTTGAAAGTTCAAATTGCAAATAAAATCTTTTGACCCAGAAAAAATTT---TCTCTGATATTGAGGAAATATTTCATGTAGGTATCAGATACCTCAAAAAGGAATTATATATAGTGGTTTAATTTTGACGAAAACTT------CCAAGA---CAGTTCTGgagatttttaaacattatttatatagatataaatagGATACTTTactatatgaaaaaatttaaacatttt----taatttaagaga----tATATC

a score=69885
s chr3           147648172 1576 + 160039680 AAAATATCCTTAACATGTTTTTATTTTTCAT--CAATTAGAA-------------ACTATCTTGGTGTGATCTAGGTTATTCAACTCAC-TGAGTTTCTTAAGCTTTCATTTACATCACAGAGACCAGGCTGCATGCAAATCTTTCTCATGGTTACACAGAGAGCTCAGAGTCACCATTATTTTATAATAGGCAATACCTGGATGAATAATAAATTGGACTCTTCTTTCTTATGTGACTGTAAAGGTCAAACCACACCACTAGAATATTTTTACCATCTATGAATATTTCCATTTAAGAGTTTATTTAAAAGAATGGTTAAATATTCTCATTATGTCTTAACAGCATGATATCATACTCCACTTTTTGACTTCTATATTTGATATGGAATGAAATTGCACCTTGTGGCCAAAGCACAGACACTTAAAGTTTTCAATTTAGAAGCATTCAAGAGTCAAACTGAGTCGCTTTACGCTTTAAAAGTCCCCCACACAATGAAGCCTACATAAATTACTGTGTGTTTAAAGGTTTCTGATTTTAATCTAATAACTGAAATATCAAAACTACTTTTTAATTCAGGTATTTCAGCTTTACTAACAGGTGTTCCTGTCTGATTGGGGAACCCCGCAGCACTATTTATCAGTGTCAAAATGCTAAAATCCCAAACTTAGTACAAGAATCTCCTTCAAATAGAATTTATATTTTGATGTCTTAAACTTCTTTGAATCTCCAGAGCATATTGTC--TTTTTATTGGTAGATTTTATTGATTTATT--TAAACCTCCAAATGTCGTTTAAGTTATTCTAAAGTCATGTATTTACTGTGAGAAAGCAGGTGTCCTTTTCAAAGGTAGATGCTTAAATAATTCATAAAATTAATTTCCTCAGGTTGGAAGAAGGCTTTTAAACTCT-ATTTGAAAGACCTAATCTTGCATTCTAAGAACATTGTATGAGCAGTA----ATAACAGACAAGAAAACATAAAAGCATAATAAATTAAATTTGATCTAGCCTAGCATAAGAATAAAACACTTGTGATACAGTCAACTGATAATTTTTAGAGCCAAACGCAAAAT-----GTTAGAACATTTATGTGTGGAGTTCCATTGTTCTAAGTACCAATTATTACGGGGTAATGCCACCATTAGGCTGCCGGCCACTCCATCTCTG--CCATTCTGCCACCA--------TAGAATCTTCTACACTCCAGAAACACAGGGG------GCACTTTGTAGTC-----AATGtttttattattattttaaaacatatatcttgataaataaatttaaacaatttatattGAAATTGCCTTATAATCAAGGATATATAT--TTCCGTATTCatagcatttgtggatttgttttatttttatataattagaaagcaatcaaatgtattaaacaataagattatgctgtatgtaatttaatctttggcgattcagagagcactttaagctattatgttttcttggagtcaagattaggtacttcataa----tttttcattgtactagtaaaatatgtagatacagaataacagagatttccagtagatacaatggtttataaataaattttactgTATATTCTCTTAATGTTGCAACAGAAAGATTACAGA
s HiC_scaffold_1 134350701 1567 + 233722169 AATGTATACCtagaatatctttattttctatatcAATTAAAATGTCTTATCATATGGTATCTTA-TGTTATTTGGGTTATTCAGCTTACACGTATATTTTCAGCATTCAATTACATTATAGAGACT--------------TCTTTCT-----------AAAGTACTTGAAGCCTCTATTAACTTATAAAAGGCAATGCCTACATGAATAATGAATTGGGCTCATCTTTCTTGTGTGACTCTAAAGGTCAAACCATACCACCTGAATATTTTTGTCCTCTATGAATATTTCCATTTAAGAGtttatttaaaaggatttttaaaccGTCTCATTATGTCTTAACAGCATGATATCATACTCTACTTTTTGACTTTTCCATTTGATATGGAATCAAATTGTATCATATGGCCAGGGCACATTCTCTTAAAGTTGTCAACTTAGAATCTTTCCAGAATCAAACTGAGTCAATCTATGCTTTAAAAGTCCCCTACCAAAAGAATCCTACATAAATTACTGTGTGTTTAAAGGTTTCTGATTTTAATCT-ATAACTGAAATATCAAAACTACATTCTAATTCAGGCATTTAAGTAGCACTAACAGGTGTTCTCATCAGATTTAGGAGCCCCGCAGTAAGATTTATCAGTGTCAAAATGCTAAAATCCTAAATTTAGTATCAGAATC-CTTTCAAATGgcatttatattttgatattttaaccTACTTTGAATCCCCTGAACATCTTGTCTATTTGTATTAGtatatttcactgatttttttctgacttttcaaATGCTCTTTAAATTATCCTAAAATCAAATATATAGTTTGAGAAAGCAGGTGTCTTTTTAGAGTGTAGATACTT-ACTagctcataaaattaattttctcagcTTG---GAAGGTTTTTAACCTATAATTTGAAAACTCTAACCTGGCATTCTGAAAATACTGTATCAgcattcagatataataaaaatggaaacataataGC---ATGAATTAATTTTG-TCTAAC------------TAAAGCATTTTTG-CATATTCAAGTAGATAGTTTTAGAGTCAAACACAGAGTAAATCACTAAAAC-TTTCTTTGGAGGGATCCATTGCTCCAGGAAATAGTTATTTC--CTTGATGCTACCATTGGG----GAAGCTTTCCAGTTTTGGTTCCTATGGGCATCAGCTGTGTGTAATATTGCCTATACTCTGGATGGAGAGGAACTTGATGAACTCaataatttgataaaaatgtttattattattgtaaaatataATGCCCACTaactaaatt-----aatttaaaatgagattGCCCTAAAATCCAGAATGTGTTTTGTTCCAGTTCCATAGGATTTGTGGTTTTCTTCTATTTATGTACA--TAGAATGCAATGAAATACATTGAACAATAAAATAACACAGTATATAATTTAATCTTTGGTGAGTCAGAAAGCACTTTAAGCCATTAGAGTTTTTCAGAGTCATGATTAGGTACTTTATACCCCTTTTTTTATTGTACTGCTAAAACATGGAGATATTGATTAATAGAGATTTCCAGTAGATACAATGTTTTATAAACCAATTGTACCA---AATTTCTTAACATTGCTATGATCAGAATACAGA

a score=37950
s chr3           147651243 3762 + 160039680 ggaaatgtaaatgaggaaaatacctaataaaaatacaaaa--------aaaTTTTTGAATTCTTAAAAAAAATATTCCTTTACATTAACTTTAAATACTTAAAAACAAAACAAAACAAAAACTTAGGACATAAGAAGAATAATGTATGAAAAATACAATGAAGTCGGGAGTAAA-TTAATTTTCAAAGTACACATAGAAACTTCTCCACCTTTTG--TATGAGCCACAAATTATA-------------TCCTAAACTCTTCCATCAACAATGACTGCCAAACCCTGGAGTCCAAGTGACTCTCTTCCAGGGATTCTTGAACTCCTCCACTGTATGAATGGAGCTAGGAGCTGATGACAAA---TGGCGCTGAGGCTGGGCTTAACAAGGGACCCGGGAACATTAACTTTCATTCTACCCTGATAGCAACCTCCATATCTTATAATGACCCTCACCGCTCTTGAAGGTCTTGAGGGACTGTGTTCTCTCCTA--ACTGTGGCCCATGGAG--GCAGTGCACAAACCCCACCATATCCATAAGTGTGGTGGAAGGTTGGACACCCCCCTTCAAGAA-GGCAGTGCACCCCAGACAAACAGGGAGTGAGAAAATTGCCTTTCCCTCTAC-----TGTTTATTCCCAAATCTACATTTAGAT---CCTAAACTAAA-CTCAATTATG-ATTTAATATCCTGAAAAATAGATGCTTTTATCAAATGTGTGAGAAAAATAGTAGT-------GGTAAATATTTGTCTTTGGAATTTTTTTAG--TGTCTTTAATAAGAAAATATTCACTGTAAAATTTTAAGAATGACAGAGACAATTAGATG--TTTACCCAGCAAAATTAAGTCTGGGTCCTTTTCAATGAACACATGGGTCCCTGGGAG-ACTTTTTCCATGAGCAATGCATGTAGATATCCATCTTTTAGGTAGGATCTCTATAAGCAG-GGCTTTAGTTTCATTATTTTGC---------------------TTCCGTGAGCGGATTGACAGACCTTCTCTGGATCCCTCATTTGCTTTGTAGCTCAAATACTGTATTTTCCTTTTTGCTGAATTCGAGTTTTCTGTGCCCGATTTTTTGGCACCGAATCAATGCATCAAGAATAGGGTTTGTTCTCTTGATACTTAAT----GTTGTCTTCGTATAGCAGTATTTATTGAATGTGTATTGGAAGCAGAAAAT-----------GGATGCTTAGATTCATCTGCACAAAGTCCTGGACATACAGAGGGTGAGTGAGGACTCCAAATTCTTTTCCAGAAAATCAAGTGACTGACAGTTGTGTCACAAGAACAATTCTAAATGGTCCTGAGAAATGTGAGTGATCGCGCTGAATGATGACTTTGATATAATTACTGTAAATATCTTTAATAATCATCAAAA--AGTTAA---ACACAGTTTGCTATATT-----TGCCTTTTAAAATATGAAGTCTGCCAAATACCTTGAAAATATCACTTGAAGAAAAACAGTTCAAAAAATTTTTTTTGAGCCTTTTCCTTTAACGAGAAAGAAATGAAGGCTGTTGGTGT--AAGAGATTTCTCCAA------TGCACACTCGCCCTTTGTAACAAGCTAC-GGGTTCAGAAACTGCTCATGATTTCCATGCCACAATAT---------------------------TACTCT--------------------------------GCGTGTAATATATCTCTTACA----------------------------AATTTTCCTTTGTTCAGGCTTCATAGCAACC-CTCCACTTCTCCTTGAAACCCCTTCATTCT------TTTATTTACATATCA--TGTGACATTCTCTTGCATGTG-CAAGGACTCTCGCCATCTCAGGGCAGAGCAGCTTGGTGGGCTGGCCGTGGGGAAGCTCTGCTTCCTGC-TTTATTGACAGGGGGCTCTGCTTCTAACCAAACTGATTCACACTGACGGAGCCAACCCGCTGAACACTGGTACAGG-GCTTCTCGACAGCTCTGGGGCCAAACCATGTCCACAGGCCATATGCCTGGCTCCTCTGTCATAAACAGATGACTGAGTGTGCACATTCCCAGGTGTAATGTCACTGGGACCTCATTTGCAAACATATAAACGAATGACATTCAATTATGTTCAGAGGCAATGTTGTCAAAACCACCAAGGAAACAATTTGCTGCGCCTGCACAGTGTGTGGTTCCAACTGCATTAGCAAGTTTTCATCGCTCAGTTTTTCAAT-TGCTTCTGAAGAGGAACTTTTGCAGCCCATCGT---TTAAACATGAAGCATCCGGTGCTACGGCATATAGAGATGAGATGAAGCAGGCCGACTGCAGAATTAGCCTGGTTGAAAAAAAAATAACAAATA-----------ATAA-----AGTCAGCTAATTTCCATGTATGGAAGCC-----CTCTGCAACCCGTAGCATAAAGTTACA------TGCTAACATCAATGGGTAGTGATG------AAAGAGCTGAAAATGATGGCTTTATGAGATGACGTCCTTGCTAAACAGTGGCTTGTTTTCACTAGTAGTATGAAACTTATCTCACTTATACAAAATGAATATAGAATATGCAACAGTATTTTAATTTTAACAGAATCCTCCTGATACCACTTTACTGTTGCAGTACCAAATTCAGACATTTGAATGACC--------CATGCCTGTGTTTCCTTATTTATATTATTAGCAGTGCCAATAAGAAGCAGAGAGAAAATTGAA---------------GTATAGCTTTATGCAATATAAAAGTAAATAACAAAAATAATAGTAAGTTTATCTTTGCAGTGGGGCTGTTTGGCAGTGTGTATAAACTTGAGTGATAGCCCTGTGCTGTATTATTTAATTAAACATTAAGTAGCTCTGGAAATAGAAGCTACCTAAGAGGCTGCAGTAGCAAAATCAGAAGGAAAAAGGTCTCTGGCTTGTACAGTAAAACCTGTCTCAGTAAATATGAAGAgggctggaaatgtggtttagttgtatgttggcctagcctgtctgggtctataggattaatctccagtactataagaCTCAGTATCACCAagataaataaataaatgcataaatagtgtgagtgtctttataaaaaatttgataaatatttagaataaataaatGTTTAGAATAACTCTTATCCTTCTCATTATAAAGAATTTAAAAACTGAGATTCAAAGAACCCAAATAACTTTTCTATGCTTACCTCCTGGTAGGTTTGTAATAAAGAGTAGCCTTTAGTGAGACTTCTGAGTTCTAGGGCACAGTGATGTGCCTGTGTACCATGGCTGCTGCCCCACCTGTCAAAAGTTGAGAGGTTTGTTGAATAGCTGCAATTGCCTGGTTATCAGGGAAGGAAAGGACTCCG-GGAAAGTAGGCAGAAGCTCATGACTAGCAGTTTTACCCCTGGAAAGATGGGTAGTGTTTGGCTGACACTTGGAAAATGAAAGTGTTTCTGAGCTGTGGGACAGTTTGCATAATCTTTAAGGAATTAACTGTTATGTTCTAATTGAATAAATGATAAGCATGAA------TAGCCACTGACACAGAGGCGTCA-------CGATCAGGCTTTGAAATGAAGAAACAAAAACCTCCAGATTCACAATGCACGTGTTATAGTTGTAGTAAAAGAGACTATAAGAGAATTCATAAATGTTAAGAATTTAGGCAGCATCCACCAAGAAAATGATAAACTATAACATTCATGATTTAACTAGATATTAAtttctgttgctttttatttaccagtggtaagccgtagtttaaagaacccaagtggagaattcctgaaaaaaatattttctaagttttcaattgtatgttactctgagtagcgttatgtaaa------ctgacattctgctctgttcagccagagatgaaaattgttccattatctgccactttttttcaatgtatgctacctgttca-tagcctcttactggctgtcttggttattagatcaagtgt
s HiC_scaffold_1 134358725 3504 + 233722169 GGAAGGCTTAATGAAGTAGAGA------AAGAATAtggaattttattgaatttttttaattcttaagatGA-TATTTATTACCgtg---tttgtaaattttaaaatgagaaaa---------ttggcACAGAATAAAAATGTACTAGGAAAACTAtgattaaaataagaataaaattgatactcaaagtgcaaataaaattttctacatCTTATAAATGTGAATCATAAGTTGCACTCTGATACTGTCttctaaattattatataaatcaTGAT------ATCATggtatttaaat-----------acaaaatattcaagATACACACAGCATTTCTGAGACCAGTACCTAAAAATGAAGTTCTGCTTTGAGTCT----TTACTGAGTAATATGTGAACtctaattttaatattatctACATAGGAACTTTAAtacattttgttgaatttttt-----------gttttgtttcattttgttttgttttgttaaaatggACTGTCGTATTGTGGTTTAGTAAT---ATCAATTTTATTGGTCT--TGAAGGCTTGTAGA-------TAGAGAATGGAAATGACCCACAAAACTAT-GTGATCATGAAACTTGGCT---CATCTATGTTCTTGTTTATTCCAAACTTCGTATTTAGATGATTGTAAACTAAAACACAATTCTGTGTTCAACA------ATGGCAAATTCATTGATCAGATATTTGAGAAAATTCCTATCAAACCAAGTTAGatgtatttctttg-----cttttaggCTTTCTCAGACACATTAATATGCATTCTTATATATCTTAAGTGA--GATACAAACTGGTGCCTTTTTCAGTCAAAATTTTATCTTAACCC-----------------GATTTCTGTGTGTAGATCTTCCAAAAGTAG-GTTCGTAAATCAC-----TTCAGGT--GATCACCTGGAGCAGAGGCCCCCTTTTGGTGATTTTACAAATAGCATCGATATCCCCCCCCCCAGGAATGTATTAATAGATCTCTCCTTGA------AGTCATATTGTGTTtcttata----atttacatttttgctGAATTTGATCTTT---TGTCAGTTTCTCTGCTACTTTGGATATATATCAAgtactgtttctgtttcttcagaacCAAACATAAGTAGTATC--TAGTGTGATGTTTATTGAGTACTTGT-GGAAGAAAAAAgtactgtgtgtgtgcatgcatgtgtgtgtgtgtgtgaagttatg-----ACTGAGAATTGTAAGATATTCCCATATagacttcattaaaaaaatctaatgGCATTTTTGTTCTTGGAAAGATACCAACCCAT--TGAG-----TCAAAAATCATGCTGATCAGAACCTTTGGCTTAATAGCTATAAATatctttaataattattaaaacaaattaataaacacaAAATGATTAATAGAAAATGAGTGTTAACCTGTGATGTctgacaaagaaa--ggaaatactccttg--------cactttaaaaatgaattcatg---tTTCTCCTTCACAGAAAAAGGATTCAAG-----TGGAGTTAAATAGATTTGCCCAACAATATTGgcgacttttttttttaaactgggtgttgaactcaggacctcatccTTACCCAGCTGCTGCACTATACTCCCAGTCCcagtgactttattttttatttttttggtcagtTCATTTAGATCAGAGTCTTAAAGCTTGCAATGTATCATTTGCATTCAAAaaggattatttttctctttttagatttTCCTTTTCATGAGTTTCATGGCAACCACTCTTCTtgtcttt--cctcttttcattCTCTGCATTTCACTTACATAGTAACTGGGACAT-CTTTTGCATGTGTCAAGGACTCTTGCTGTCTCAGGAATGAGAGACCTGGTATGCTGGCTGGCGGGAAGCTGCACACCCCTCACTTACTGATGGgaagagctgtctctgacagagCTGATTCACTGTGATGAGGCTGACTGGTTGAGCACCAGTCGAAGCACTTTGCAACAGCTCTGGGGCCAAACTGAGTCCTCAGGCCATATGTCTGGCTCCTCTGTCATAAACAGAACA---AGTGTGTACACTCCCAGGTGTAATGTCACTGGGATCTCATTTGCAAACTTATAAACGAATGACATTCAGTTATGTTCAGAGGCAGTGTTGTCAAAACCACCAAGGAAACAATTTACTGCTTTTGCATACTGTGTGATTCCGAGTGCATTAGCAAGTTTTCATCCCTTAGTTGTTCAATATGCTTCTGAGGAGGTTCTTTTGCAGTCTGTTTTATAATAAGTATGACACATGCATTTCTGTAGTGTGAAAAGAAATGTTGGA----ATTGACGGTTATATAAAAGTGGCTGAGATAACAATTTTAGATATAATATTCTTCGTAATCATTAGtcagtta------aagaaagaaaggcaaaatttCTACTGTTAATGGCATAAAGTTAAAGTTATTTGATAACACAAATAGATAAGGGgggaaaataaagttttttaaattttggctcAGTAAAATTCCATTCTTGCTA---AGTGATATCATTTTGCAGGTAG-AAAAAATATCTCTAATTTATGTAAAACATGTATAGAGTAAGTGATGT--TTTTAACTTTATGAGATGTCTCATACTGTCATTATAatatt------cctagaaaaaacatCGGAAGAAGCAAAAAGTTTAGTCTTGGGTTTCCTTATTAACACTATTACTACTGCTAATAGAAAATAATCAGAATACTGAATCAATGAAGTGGCCTATATAGTTTTATATGAGGT--------ATAACAACAACTAT----------TCTTTGTA----------TTGGCATTGTGT--------------------------------TTTa----------------------------------------------------------cagaatgcagaa----------------------------------aaatat-----------------------------------------------------------ATTATGCTCATGgaatat------------------gttaaatgaa-----atataaataggGCACACATCTTCAAAGAGAATATCATCA---------------------TTACCATCATTTTTATCAATCTTATTTCAGAGA----CAAGATTGAGACTCCAAGAAGTTCAATGACTTATCT------------CAATAATATTAGTATCAAAAGTCAATGTCAGTGAGTCTTCTGAATTCTACAGAA-------------GAGTATCATCTATGATACTGGAACTCTTGCAGATT-----------------------------------TCAGGAAAGGAAACAAGTCTGCAGGACCCATGCAGGGGCTCAATCGTAGTAGTTTTAAACATCAAAAGATGA--------tggtgaaaa---ggaaaatgaatgaaattcttaGTTAAGCAACAGCTTAGACAATA-GTATATAATTAACACTCATGTATTGAGT---TAAATAttaaacattgaagacattaggTAATATTCTAGTGTAATCAATAACTTTGATTACACTTAGAATAGGAG-AGTTAAACTCTTCAACTACGTGGAGCCTATGTTATAGTGAGAGCCAGACAGATTAGAGGAGAA--cacaatttttaata---tatgtaa--------aagaaaaaagtagaggacaattttttt--cttaa-tagtatTTTGTTTATGTAGTTTCT--GTTACTAGTGgtgaaatataatttgaaaa--ttaaatggaaaatt---------attaacttataatttctaaattgtgtatttttctaGGTACC---ATGAAAAATTTTTATGTCATCCTGTCCTATGTAG--AGAGATATAAGTCTCCCCTTTGCATAATGTATCCACATGGCATACACTACCTGCTCATTAATCACTTTGTGGCTATCATGGTTGTTAGATCAATTAT

a score=38204
s chr3           147661473 2299 + 160039680 AGAGGTAAAAACAACACATCATACTAAGAATCAACATAACTTGAAGGATTACTTTCTCCTCCAGGAATAAGTTATTGGCATTTTTGTGACATTCATGGAAGTTCT-----GACATGATGAAACATCAATAAGCTCAAGACAATACTGTAATTAGATTTGAAGAAGTTGAAAATG---GAAAA---GGGAACTTGATTAAACACA---AACTGATGTTAGGAAAATGAATCTATAATTGGCATCATCAAAATTGAATATTGTCATTCACAGAAGA---TCCACTGTCTTCCCAGGAAACCAGATCTGATAAGAGGCAGAATACAGATTAAG--TTATGCCTACCTAAATACAAAA-----------------------ACTATACATTCTATGATACACACA----CACACACACTAAGGATAATA------AAAAGCAAAGGCAG-----------GGAGATTCATAGAA----------ACTAAAG-------TAATACTGCAGTCA-------------------------------TGCTTAAAGACCGATGTAACATGCAACTGCCTTATTTCCATGTAAGAGTTTCAA-TTTCATACATATCTATGGGTACATGAATTTTAAAAT-ACATGTtctctctctctctcactcactctgtctctgtctctctctctctctttcttctttctctTTTCAGATATTTCTTTTATCATCCTAGCAACATTCTAAAATT-----TGGAACTTCTAGTATTATGACTTCAAGGTAAGATGCCCAAGAAACCTTAAAGAT-------CCATCCAGTATCCTGT-TGTTTTATTCAGTGCTGCCGAACAACAGGTAACCATGTCTTCTGGTAACTCTTGTACTAAGCACTTTATTTTATTGTACCTTAGAATTTTAAAGATCCTTCCTGCTGTTATTAATGGAAAGATTATCCTCAATAGAAATCATGAGTTACCTGTCTAGTCTGTT-GTTAATAGAGATCAATATAAATTTTAGTCATGCAGATCACAGTAACATTTCCTAAATGATATCTTCTCAGA---------------------CTGCCATTTACAGTCTAGAGCAGGCCAAATTTCTTCCCTTATCTGAACACATTCAGAAGA-----TTGAGAGAC-ATGGCTACCTGTCCTCAATCACTAAGATTTTTATGCAAAGACCTCAATAATTGTTAAGGGTGG--GATAGGATAGCAGCGTTTTCAGGTGAAATCTATTACTTCGTGGGATATTTGGTCCCCATTTTCTGATAATAGACAATGCCAAATCAAAAGTGAAGAAGATCAGGAAGCA-AAAGTTGAGGCAGGTAAATATGGGACAGCTGATTTCAGTGCAGACGAA-AAGCCTCAGTCTGGGAATAGGGGATTGAATCCATGCAC-AGCTGTGGAACAGAGGGAGAACTGAGAGATTAATAGATGACAGAGTATTACAGATGAATTCACAATGAGTCACGGAGGGAAAAGGAGACTGGTGGTAAAGATGTAGAAGAACCTGGACAAGAAATATGCTATTCCTTCAGTAGCATGGCTTACATAGCAACCTGCA-CCCCCAGGCTCCCCATTTCTTGTGGGGCTGATGCCTGTGCCTTTTCATTTATCAGAATGTCTAAAGTGCACACTCAAGGAGTGATCATTGAAATTACATACTACAATTCAGAATCAAAAGAGGAGAAATTAAATGTATTTCAGTTCTCACCAAAATGAATGAAAGAGAAAAATCCATGTAAAGATCCCTGAATTAAAAAAAGAAGAATGCTGTA-ATTTATTGTGGATAATGGTGTAACAGCAAGGCATCAGTC-ATTGATGTG----TAAGTTCATAAGAATGAACACGCTTACTTAAGTGCGATCtgtgagtgtgtgtgcctgtgtgtgtgtgtgtgtgtgtgtgtacgtgagtgtgtgcgcatgtgtgtgaatgcatgtgtgtgtACCTATAATACAATATATCTCATATATGTCTAAGTGTAGTACAAATTATT------TTTTATTATTGATAATTTCAAGTACTGATTCTTTGGAGGGGTAAGGAGAAAAATAGAGATCTGTCTAGAAAATGAAAACACTAACAGA-----TAGATATTCTAAGGGTTATTTGGTTCATACTTTACAGGAAAAGTAAAAGAGAAAAACACAGGATAATTAAAA---------AAATAGTTCAAGCTGTCAGAAGTGTCATGAGATTATGGAACTATATCTGTATCACA-----TCATATGCTCCTATGAAATAAA-----TTATTACGAAC---------------AAATCTAAAATATTAGTTATTGACTAATTTTCAACCACAAT---TTTAAAAACTATTAATTTTAGAAGTTTATGATGATATCTCTGTATG---GAAGAAGTTCTATCCTTTCATCAAGTGAAGAACAGGCTGCCCAACAACTGTTT-------ATCCCAtgggtgggttcctgagcagcgggaggggatatacgatggggaatttttgga
s HiC_scaffold_1 134370423 2319 + 233722169 AGAAGTAAGAAAAAT-CATCTTCAGAAGATTCAGCTTATCCTAAAGCATTTCTTTCTATTAAGGGAATAAGTTATCAGCATTTCAATGACATGCATAGatggttttaaaagaaatgataaaacatca-caagttcaagacaaCACTATAATTAAGTTTTAAGAAGTTGGAAATGAGGGAAAATCAGAGGACTTGAgaatatatataaaacctatggTAGGAAAATGTCTCCATG-TCGACATC-TAACAATACAATG--AACACTTGCTGAAAAGCACCTACTAATTTTTTGGAGCTCCACATCATTCAAGTGATAGAACactgataaaaatttttgtttatctgACTACAAGACAAATAACTTGTTTTTATAGCTTACCATA-GCTCCATAACTAATGGAGCTCCATagctaataaagaaaatacttacAGAAAACAAGGTTAaatctgtgttgagaagtttCAAAAAATACCCTTCAAATTAAAAGGATATCTTATACTGTAGATAAGTATTCAACTTGTGAATGTTGCTTAACAGATGTTCAGAGAGTACTACCATGTATGTTTGCTTTATTTCCATACAAAGCTTGAAAGTTTGATATATGTCTGTAAATACATGAATTACATAGTTATAGATtgacttt----------------------------------------------------------tacttattttattctcACAGTAGACTtgcaaagagaataataaaacttCTAGCATTTCCACTGAAAGGCAAAATAACTAAGGAACATTAAGAATAAACTATTCGTCCAGCTTCCTGTATATTTTA----GCACTGTTGGATTACATGCCACCATCT-TCCTGGTCACTTCTGCATTAAATGATCTATTACCTAAGCATTCAGAATTTTCTAGACCTTTCTTGCCACTTTTCATGGAAAGATTAAAGTCAATTTAAATAGCAAGTAATTAACCGAATCTATTTGCCATTAAGACTtactatgaatttttattttacaggcCATAATAACCTTTTCTAAATAACATATCCTTAGTGTGAGATTATCCTTGTCAAATCTGCCATGTCAGGCCTGGAGCAAACCATGTTTCCTCCCAAATACTAATACATCTTGAAGAAAATGTCAAGAGATTGTGGAAGTGTATGCACAATTATTTTGGACTAT-TACAAGAAGTTGAATA-TTATCTAGGATGACTGATGGCCTTTCTTAATATTTGAGGGGTCTCTCAAATCAGATGAGATATATGACTTGTattctttaagaataaaataag---atttaaaa---aacaaaaacaggaaacagaaagttGATATAGACACAGATGGAAGGGTTT-CTTCACTGTAGGTTAAGAAATCCCAGTCTGGGAATACGAGCTTGAATCTGTGTACCAGCTTTGGAACACACTAAGAACTGAGAGACTAAGAGATGACAGAGTGTTACAGATGAATTCACAATGAGTCAC-AAAGGAAAAGGAGACCAGTGGTAAAG-TGTAGAAGAGCTTGGGCCAGAAATATGATATTCCTTCAGTAGCCCAACTCAGGTAACGATCTGTATTCCCCAGCTTTCCTATTTCTTCTGGATGCTGCACCTGGATGATTTCATTTACCTGACTACTT--AGTATAAATTTCagtagaaaaca--ggaa-----------aatacagaattaaataaAGAACATTTAGATGTATTTGAGATCtcttcaaaatgaaag-----gaaaaatgtctgTGGAGAGCTTTAAGTT----ATAGAGGAAAGCTGTATTTTTATTGTGGTTAAT------------ATACATGAAACTATTTATGtgctcacatttttaaaagaataagca---------------------------tGTATCCCCATATACACATG-------------------------------GTGCATCCATGCATGTGTGTG--------ATACAGCACTTATCCAACCTG-------GTAGTTAACATAATTTAACAATCTCATTGCCAGTATCTTTGGGTACTATTTCTCAAAAGGAGT--GATGGAAAATACAGCtctctctataaaataaa---actaacaaacaaaccagattttCTGTGGGCAGTTCGATATGTATAATTCCCAAACACTGAGACAGAAAAgtat-ggagatttaaaaaaaaaaattaaaaagcccaaGTCACCAGAAAGGTCACAGAGGTCTGAAAACATGCCTGTACCTTAAATGTACTTGTACATATATAAGATGAATTGTCTTACTATAAACTTAAGTAATTATTATAATCATCAATTATTAGCTATTAATTAAATTAGAGCTAAAATGAGTT----GTCTGTTCCTTTCAGAGTTTAACTGCTTTTActctataaatatgaaaaagttgTAACACATCATGAGATGAAACAAAGACTGCCTACTAACTGTTTTATATAGTTCCCCTG---AGGTTCTCCAGCAAAAAG-GTGGGTGTTTGAAGGAGagatatttga

a score=37996
s chr3           147664318 1400 + 160039680 TAATCGCTATGAATAAAACTGAAACATGATTCTTTCTAGAACTTACTATGAACCTTGGGTTCATTTACAGTCTCATCAGTGGTCCATTATTAAGTACAGTATTTATTTGCTGTTTGGTAGTTTCTTCA----GAGATGAGAAAGTCATGGTGTGTCTTCAAATTACCTGAGCAATTGCTGTAATTTGCCACTTTATAATGAACATCTGCTTTTCTCAAGCTAGAGTCTGACCTTGGTAATGAGTTTAAATGCCAGGATGATATTTTAACACTACTGTATTATAGACATGCATGAAACTCCGTGGGTTTGGATGCTAATAGAAACTTATTTCTACATGTTATTCTATTTATTTCAGCTTCACACTATCCACTAAGATGTTATAAAAACAAAACTAGAAAAAAATTAGCATGCTTTTGTGAATACGAAGTTCTCTCCATTTTAATATTTTTCCTAGACTGGTTTTTCATGTTTCCTTACAGTAAATAAAACATGAGGAACC-TTCAGTACCTTAACTAGCATTTTTCtttaaatattaaatattatt-ttGGAAATGTTTGAACAGTCA-----------------TTTTCCTGTTGGAAATAAAGTCTGATA-TTCTTCTGTTTTCTCCTTTGATGTCCCAGCAACCTAACACTGCACAGAATGGAAAAGG--ACCAAATTCCTCCTAAAAGTAAGGATATTTATAAATCTATGAAAAAAATCAAGACTACAGACAGCCTGTGAAGAACTGAATTCAGTGTTCAGTGAGAAGCCAGGCAACATTTTTTTTTCCAATTTGGTTTTTAGTTTTAAGAAAAA--------TTGAATTGTTGTTGGCATTGGTGTTACAATTCATGGTATGCTACATTATTTAAGGTGAAGTTCATGATAGCTCTTATTTAATTCCTTAAGTGTAT------GATG-CTTTGTGGGTAATATGTCCCCAGACCTGTAAGACAATAGCTACTTGACA---TTGCAAAGCTT-CGAAGGGCAGCTTGCAAGTTTGctcaccagcactgtggtacaggtgtgcatcagggcacctaacttttacttggggtgttgtggatctgaactca-gtccat---ctcacttgcaaggcagacactttgccata-----tgagccagccttctagccTTGATGCATGCTCTTATAGTAAGGCTAAATGCCAATAGTTCATAAAGAAGTGAAACATGGTTAAATGAAACATGTGGCTGAGGTAAAGCAAGCTGCAATCTGAAAAAATGCTGCAAACCACCCCACATACCCAAGACAAACTCCTTTCTTCCACCCTTTAGATTTAAGATATTAAGATCTATTATTGTTTTATAGCTGGG----GCCACCTTTATTTCGTGGATATCCTGTACACAGCCTAGGATGAGCAGAGAAAGGATCATGAGATGATGGAGAAAGGCTGGAACCCAGGTGCCAAACTCATC
s HiC_scaffold_1 134373735 1338 + 233722169 TAATCATTGTGAATAGTATAGAAACACTATCCCCTCTACAATTTATTCTGAACCTTGTGTTCATTTATGGTTTCATCAGTGACCCAA-ATGAAACATAGCATTTATTTGCTGTTGGGTATTTTCCTCAAGCAGAGATCAGAAAGCCACGCATTACTTT-----GACCTGAGAAATTGCCATAATTTGCTACTTCATGATGCAAGCCTGGATTTCTCAAGTTAGATTCTGACCTCGATGATGAGTTTAAATGCCAGGATGATATTTTAACTCTGCTGAGCCATAGACATATATGACATTCCATTTATGTACATGCTAATGaagacttatttttatatattacccTATTTATTTCAGCCTCTGATCatgtactaaaatattttaaagacaaaaccagaaaaaaat---catactcTTGTGAG---GgaacattttgtattttcatatattttataatctggtTCTTCATGTTTCCTGAAGATAAATAATGAATCAGAAAACGTGCAGCATCTTGACCAGCATATTTCTTGAAGTATTAAATATTATTCTTGAAGATGTTTGAACTGTGAATAGTTATGTGTAATAGTTTTCCTGTTGGAAATAAAGTCTGATAGTTATCCGGTTTTTTCCTTTGATGTCTTAACA--TTAATGCTATACAGAATGGGGTTGGCTACTGAATTTTTCCTCCAAAATATGAAACTTACAGTATCATAAAA------AAGGCTACAGACAACTTTCGAAGCAGTGATTTCAG--------AAGA-----------------------AAGTAGGGTTTTATTTTGGAGGAATAAAGGGGCTTTGGATTCCTGTTGATGTAGTTTTTACAACTGAAGATATGtcagatattttaaagtaaagt---tgaTAACCGTAAAGTAGTTCCTTTACTGTATAAATAAGATGATTTTATGCACAATATAATCTCAGAACTACCAGAcagcattttctttaaattgttgcAAACCTTCCAAAAAACAGTTTAAA---TTGCTAACATATAAAGTCATAC------------------------CTTATTTGAAG------------GAACCCATATCCATTACttcatttatc------tcatttttctataaaaattgaGACAAATCTTCAAT----ATATATGAtctaaaatgaagacaaaattacAGTAGTTTACGGGTAAGCTAAAATATGTTCAATGACATGTTGAAATCAGATA---CAAGTTGCAAACT--AAAAATGCTTCAAATCATCATGAATATTCGGGACATTTTCCTATCTTCA-----TTAGGATTAAGACTT-----TTTGTTTTGGCCTCACTATTGGAAaacatttactttatttcttgGAAATTCTCTATATACCACAAAAC--TTAGAGAAATGGTAGTAGTTAAATACATGCATACTGAATTCCAACTGCCACAAGCATC

a score=50984
s chr3           147679125 1643 + 160039680 TCCTTCAAGTCAGGCTGCTTGC-TCTAGGATTGGTCTCTTCTCTTCCGAGCTCTTTTTAGCAATTTGGAACCATGCAAC---TTAGAGTAAATATGATTTGGAC-TAAAAACAGAGTTAACAT--TTTTAAGGTTTACTGA-----------ATTC-------TTTTTCTATGTGACAAAGTCTTTCTTAAGCCCATTATGTGTATA-ACCCATTCATC--CATTCTGGAGCAGGGCTAAGGTAGACA--AGAGGAATGATAATCTACTGGGCAGACAAAATACCTTGTATGAAGGAAGCCCTGGGCTAGAAAGACTTAAATGCAATTAGAAGGGACACATTTCAAAGGGCAAGAACAGTTAAAA--TAGGAATCGCAGGTAGACAGCAGCCAGGTGTCT----------CCCAGAATCCAGAGAGACTC------GCTCGCTCGACACACACAAAGCATGCTCT----CACATTTTTACCA-----CTTCAACTACAGATTAT-CTTGGCTATTCCTTTGGTTTTCATTTAGCAATT--------CTTTCTGAATTAGACAATACTTTCACTTCTTCTTTCTTAAATAATATCCAGTATCTGTTTCAAACTCATTTA----TCTAACAGGAATGAAATGAGTAT------------------------GACTGAATTTT----CAC----------------------TTGCATTAATAAGGCTTGCATTGG-----------------CAGGGTG-TGCCATTA----------------------TTTGTA--------TGACAAG---AAAACTTCTTTGTTCCATTCCA---------------CGTTTCCTTTAAGGATGAC--TTTGTCTAGTCCTGCCTACCCATCA-TTCTTCTTGAACCAACCTTCTCCACACCTCCAGCTCCCCACATGCATATTCTATCATAGCTTTCCTTGGCAAACTTTATTATTTTCTTCAATCTAATAATAAAATCTAGTTATGAAAATGGCCCAGTCCCAGAATGCATTGACATTGGATTCTCCCC-ACAGCTCATGATGTTGCTTTTCTTTCTGTGGCATCCATGTATATATTTTTCCTTTTAAATGTGAAAGCATGTAGCACTCCCTTTTAAGTTGGTTGTGTATTTGCAAAATTGAATGAAAAGCAAATGTAGTTTTGTTAAAAAAAAAATCACTGCTTCCCTAAAACAAGATAATGTGAGACGGGAGACAACAACATAACAATCAGAAGCCAACCGCCTTAGTGATAGGAGGAATTCTTTGTGCATTGAAAATGTATAACCATCAACGAGTTTTGTCTCCCTCTGATTGCTACCTCACATAGGCAGGTATAAATGCCAACACACCTGCCTGAACACTGAGGAAAACACAAAGGC-CCATCACTCATGCTTACATGGGGCTCTGCTTTTACCCTGAGGTGCTGTAGGCACTCCTGTAGCACGGCATATTTTACAACATTCAACCCTGTGCATGAATGTTCCCATGCCAGAGCAGATTATTCAAAATAATAGCCTGGAGTGGTGCCTATACACTTCACAGGACTGCCTAATCCTAAGCCATTGTTTACTTCAAAAGCAGAGGCAAGTCCCTGAGAATAGATTCTGCCAATCACACTTCAGTGTTGCCCTGAACCCTCTCAGGAAACCTGGTGGTTGTAAGAGAGGTTAGCATTTCACTCTTAGGACCTCATTAAGCATTCTAACCAAGAACAGGGCAGAGTACCAGTAA----ACAATATAGG-GCTTTAAAAGAAG-ATATTGAGAATCAAAGACATCTGCAGTAAGAAAAACATTTCCTCAAATCAGAT
s HiC_scaffold_1 134380874 1792 + 233722169 tctttCCAATGAATGTACTTGCCTCTAACATTGTTCTCCTTCCTTC--AACTCTTCATAGGAATTTGAAACCATATAACCAttgataataaaaacaattttgacattaaaatagatttaacacaatcttTATTACTACTAATTACAATGAACATTCATTAAGATTTTCATACGTGCTGGATACAATTCTGAACTCATTATAGGTATGCACTCATTAATCATCACAGAGATGATGGGTTAAAGTGAATGGCAGACAAACAATAATGTATACGACAGATAAA-TCTTTTGCACAAATGAAACCCTTGGGTAGAGAGA------------------GAACA-AGTCCAAACAGGAGTAATGACTAAAAGTTAGAATTAAAAGGTAAACACCAACtatccattttaaaaatcatccctCAGTCAAGGAACCTTCTGTGGTATTCATGCAGTACAAATAAAGCATTCTTTACTTCATTTCTTGACAAACCGGTTTCTACTTTTTATTATGCTTAAGTATTTCTATAATTCCCATATACTAATTTGCCTGTTCCTTAGGGATAAGacaatgctttaattttttttttaa-aggtatccTCCAACATAAGCTTCAAAGTCACTTAAAAGTGTGCAATTAATGAtttgtttatctattttcttttagttttgtttgagacagaatcttactacaTAATCCAGGATggcttgaactcattacataaaccagattggcctcgaactccttcctcagtctccagagtgctggaattacagacagtTAGGGGACACAAAGTATGCAGCTAATATTGCCAAGCTTAGATCTGCGTTATTAAGGTTTAAATTTGCTGGGAGTACATTTCATTTGAGTGTGACACTTTTACCAGTTTTCTACATCTATTACTTTTTCCTGCACCATCCCCTTCTACTGCTCTCACTCC--ACGTGCAT-TTGAGTCACAGTTTTCCTTGGTGaatcttataatttctttccaCATAATAATAAAGTC--GTTATCAAAATCATTCAGTCCTAGAATGCATTGACATTGGATTCTCCCCCAAAGTGTATCTTTTTGGTTGTCTTCTTAAGACATCAATGTatgt---ttttcctttaaacatGAGAACAAGCAACAATTCCCTTTGATTTGATTGCGTATttgcaaaattaaatgaaaaggaaatgttgATTTGT-----AAAAAATCACCTCTGCCAtcaaacaagataatgggagtgAGGAGGCAACAACATAACAATTAGAAGCAAACCGTCTTAGCACGGTGATGCATTCTTTGTACAGTAGAAATGTGTAATCATCAAAGAGTTTTATCTCCCTCTGAATGCTACATCACACAGGCATGTGTAAATGCCAGCACACCTGCCTGAACATTGAGAGAAACACAAAGGCTCCATCATTCATTCTTACACTGGGCTCAATTTTTACCCTGAGGTGCTGTACGCACTCATATAGCACTGCATATTTTAAGACATTCAACACCTTGCATGAATGTTCCTGTGCCAGAGCAGATTATTCAAAATAATAGCCTGCAGTGGTG-CTGTATACTTCAGAGGACTGCCTAAC------CCATTGTTTATTTCAAAAGGAGAGGCAGGTCCCAGTGACTAGAGATTGCCAATCACATTTCAGTGTCATACCAAATCCTCAGAGGAAACCAGAAAGTT----GAAAGGTAAGCATTTGACTGTGAGAACTGCATTAAACATTCTACCCTTGAAAAGGGAAAACCACCAATAAATACACGATCTGGGAACTAGAAAAGGAGCATATGGACAATACAAGAAATTAAAGGTAAG-GAAATATCTCTCCAAATCTGAT

a score=61079
s chr3           147685011 1958 + 160039680 tatagatagataaatagagataaatgtaGTACG---ATATAGCTCTATAT---TGAATAT-CATTTAA------TTTTGTTCTTAAAATGTATGGATTTATTTTGGTTTTCAAAA--CAAGATT-CATATAA--ATTTATATA--TCAGAGCATTGCTAAATTTCTTTTCTGGTTGATAGCTGTGTTGGTGCGTCTTTGGCGTGTGTCTTTCTATTGGCTGTATTTTACAACAAATATGATTCT-ATTATATCATTTA-ATCACATTA-AATATATAGCTAT-CAGATATTTGCCAAAGCTTATCTACCATGGAATACCTAGGGAGTGTCT-TTTGACAAC-------TCTTTTTAATTAAAGAGTGTGTCCTTTGGAAGAGCTGAGATGAAAGCATTGAGAAGTCTCTTTTCACTCCTCATGGAAAGTGTGGGAAATGAATAATGGACATAGGTAATTAAAATGAGAGCTTTTGAATTACCTAAGATGACATTCAGCAACACCAAGAGGACATCCTTGGAAACATGCAGAAAAATCAAAAGTCCTCTTAATAGGTTTGGGTAACAGGCaaaaaaataaaataaaataaaaGAATGCAGACAAGATGATAACGGCATCACTTCAGGATTTGGTTCTTTGATAAGAAAAGAATTCACTTATTATGTGAGGGAGATTTTTTTTCCTAATAAGATTAATATGGCAGCCTAATACAAATAAGAAAGAGATGTGATTATCATTGTTTTTATAAGTTTTTCTCTTGAAATATATCATATAGAGAAAATAGAGAATGATGTAAATGTCTTTATAATGAATATTTGCTGAGACCATATGGTAAAATTGTAGATCCCAAATGGCATTGATTTCCAGATAGTGCTCTAATTTGAAATATTACAGATAACCTAATTTTGGATCTGTTTCAAGTACATCATTGTCTTTATCTCTAAAGGAGCCAAGGGAATCCATTTTGAAAAGGGAAAAAGAAAGGAAGAAAAAGTCAGAGCAGGCTGGTGATGATTGAATAAATTGAAAAAAA---------AATAAACACATAATAAAAGTTACTATAAAGATACATAAGGAAGAAATTCATAACACACAAGAGAAGCTGTGGGTGAGATAAGACACCAAAACACATGTTTAAAAATCCTCTTCTATGTTCTTAAAATTGGGATTGTATTTAGGAAAATAATTAAAAGATAATAATAAGTAGTTGGTACATTTTTACAAAAT----------CTGGGCACAACATTCCATATGCACACAGACATGCC----CAGAATAAGCTTTGTTGTTATAGTCAAAGATGGACTCAGGTAATAAAAACAAAACAAAAAAACCCCTCATCTCTACTTACAATAAAGCCTTAAAATAAAGAACAAACCTTATTATAAGGACATGAAATTTTAAATGAAAGCATAATTGGCTTGCTGCATTTTAAGACTACATTACTGAGCTATAGCTTTACTGTTGTAAGTTTATTACATACATTTAAAATTGAGCGTATTGTGAAGCAGTTTGGATCCGCTGTCTCTTTCTGTCTGCCTCATCCATCAACACCCCTATTCC-CTTCATTCTTCCCCAATGACAAACACAATTTTCTCTTT-----CCCAGGACAATAAGGCTCAGAGCTCATACTTAGTTTCCTAAAAAAGTTGTCACGTGATCTCCACAAGATTATTTTTCTTCTCCTCCTAATCAGTGCAACATGCCACATATGAACGC----------AAACTTTAAACTATATCTAGCCATG-TAAACTTAGCATATAATGAG--GGTACATGTCTTTGCTGGAATTACTCTTGGGGCTTCAGACTTTGTTTTCAGGTAATTGGAGTCAGTGAGCACAAAATGTCTTGTTGAATTGATTTTATAGTTCAAGTATATTTTGTATTGTTAAAAATGGCTTGTGATCATAGGACAACA--------TACTCCTC---------ACTAAAAAATGGCACCCAGAACACAATCCGTCTTCTGCATTAGGAAGCAGTGTCTTC-CTTTTCAGTATACAAATGACCCTTA
s HiC_scaffold_1 134387375 1922 + 233722169 tgtgtatatataaa-----atacatgtgaaatgtatatatatttgtatataaatgtatatacatttcaCATGCATTTTGATCTTAAGTCATgtgaatttatttccttttcaaaaaatcAAGTTTACAAATAAGGATTGAAGAAATCCAAAacattgttatatttcttttctgaattgtACATGCATTGGTATGATTTAACTACAAATATTTCAATtagaattatttcaaaacaaaaatgattcttCTTGTACCATTTTTATCACACTAGAATAAACTGACATTCAGAAAGCTGCCAGAGCCTACTTACTTTCAAACAACAAGGGGATGTTtctttcacaatatatatatttttttaattacacaAGGTGTTCTTTGGAATGGTTAAGATGGAAACACTTAGGAGTCTCTTTTTACTCCTT--------TgtggaaaataaataatggaCATAGGTAATTAAAATGAGAGTTTCTGAATTACCTAAGATGACCTTCAGCAATACTGAAAGGACATTTGtgggaacacacaaaaaaat---aaggtTCCTTAACAGgcatggaaaacag---------------aaaacaaaa---------catgataaTTATGGTATTCCTTCTAGATTTAATTCTTTGGTAG--AAAGAAGTCTCT-GTTATGTGATGCAGAAAATtattc-taataaaattaatatggtaggttgataaaaataagaaata-atgtgattttcactgttttagtaactttttctcctaaaatatatTATGGAGAGAAAATAGAGGGGGATATAAATGTCATTGTAATGAGTATATGCAGAGACCATATGGTAAAATTGTAACTCCCAAATGGCATTAATTTCTAGACAGCA-TCTAATTTGCAGTATTTCTGATAACCTCGTTTTGGATCAGTTCCAAGTCCATCATTGTATTTATCTCCAAAGGCACTAAGGAAATGCATGCTGATAAAAAAACAGGACAATCA--------CACTTCAGTCTAATGTTTATTATATGTACTTAAGTAAAACAAGTGGTAATAGTTCCATGGGATGGAATATTACAGGGTACGAAGTGGAAATGATACCTATCATGAGGTAGAAACAATAAGTGAG----------AGAACATATGTAT---------------TTCTCTTAAAATGGGGAATCCCTTTAAGGAAAAGACTAAAGGTTAAGCATAAGCAGTTGGTGAACTCTTGTAAAGTAATGTACAtactgcacaca------cacatgcacatagaCACATTAATACACAACAAGCTCT-TTATTAAAGCCAGAGTTGGACACAcgtaataaaaaaataacaa----------cttaTCTACTTACAATAAAGCCCTAAAGTGGAGAACAAACCTTATTATAAGgacatgaaattttaaatgaaagcatAATTGGCTTGCAGCATTTTAAGACTACATTACTGAGCTACAACATTATTGTGGTAACTttattatgtacatctaaaattgAGCTGATTGTGAAACAGTTTGGATTTTCTGCCTCTTTCTGTCTGCCTTATCTTTCAGGCAGTTTATGCCAATGCTGTCTGCCTGGAGAATAAACA------TCCCTCTGATGACCCAGGG-GATAATGTATAAAGTTTGCTCTCAATTTCTCACAGAAAGT-----GTGATCTCTACAAGG----TTTTCAGTGCC-------CAGTGCAGTATATCATACAAGAACTcttaaaatctgaaactttccTGTATAAGCATCCATTCTCAGTTaagaatataatgaaataaaacatatccCTATGGTAACCACTCAAAGAAGTTCGGGCTTTGTTTCCAAATGAGCAAAACCAATCAGGAAAAA--GTTTTATtaaactttctct---ttttaaatg---tttttattgttaaTAACTTGTTACGATTGTAGAA-AACAATCACTTTTACTCTTCTTCCATCATGATAACagatgattaaaacaaaaaaagcagtaTTCTGCTTTAGGAGGAAAAGTTTTCAATCCCCAGTGTAAATCCTATCCTTA

a score=5767
s chr3           147687671 294 + 160039680 TCTTTTTACTCTGTTACTTGCCTTTCCACATTATTCATTTTCTAAGTTCTCACAGCTCACTAAATAGTCATTGCCCTCTGATTGCTTAGGCAAGATGCCCAGCAATCATTCTTGACTACTTCCTAAGGCTTAGTAT---CCTTCACTCCTCACTGAGAGCTG-------------------TCTGTCTCCAGTAAGTCCTCTTCAAAATGATGATAGCTACAGGCTAACTGTAAACATTAGACCTGGATGACAGCCATTTCAGCACTCTATCCAGAATTCCATTCAGATTTTCCTGCCCACTTTCCACTTTTACTC
s HiC_scaffold_1 134391064 283 + 233722169 TTTTCTTCTTCCATTACATGCTCTTTAAAGTTGCTCCTCTTTTAAATTTCCCAAGTTCACTAACTAGTTACCATAGTCTGGTTGCTGAGGCAAAAGGCCCTGTGATTAGTCTTGACTAC--CCCTAACCCTAGAATCAGCCTCAAATCATCACCGAGTCCTAactctttttcttcccattttctttctccactAAGATCCCTT----ATGAGGGTCACTAC-----------AAATATT--------CTCAAAGCCACATAAATGCTATACCT--AACTTCATCCAGGATT---TGCCCA---TCCATCTTTACCC

a score=18962
s chr3           147691497 738 + 160039680 ATGGCAGACTAGTTCTGTAGGTGTTGTTCAATTATTTAATTTTTCCAAGTTGTGCCTTTTCTGTTTGTTGAAAACCTAATTATCTC-----CATCATCATATGACTGTTCAAAAAATGACTGGAAACTGAAAGGATGTTTCATACATGAAGAATTA---CTCTAAAAATATAAACCTTCAATATC---TGAAATGTACTTCACTTAGCAAGCTACCATATGA----------------TGAGAGAGACAGTGTGTGTTTAAGAGTTCAATGATTTGAAGTAAGTTTTAATCTCCTGTATTTATGAATAGGGAAATTGAAGCTGACAGCAAAGAGATTTATAAAAAATTATATGGATAATAAGGGAAGTCTTGGGCTTCAAATTCAATTCTGAACAAATTATCAATATACAGACAAAATCAAGGCAAGCTAAAGATCTAATAATTCTTGTTTTGTATGATAGTATTTATAAAAGCAAAGTCATGA----------AGcatg-----tcaaagcatgccacattggcatgtggactgttttaactc-cactcaaatgagaatcagcatacgtgacaag-----cttctttg-atttttcttatcag----aagcag-aatttgtgagaaatgaaaactaccgtagaactttcttctgtaaagttttacaacc------aagaagaataaataagtgtgca-ccaatatgagtctgcacaaaccactactattaaaataatttgcccttcctttcgctttctc---tgtttgacttctaatcctctggcatgtcgaggagctcaa
s HiC_scaffold_1 134395853 788 + 233722169 ATTACATACTACGCATGTGGGTATTACAAAGTTATTTAACTTTCCCAA-TACTCAGTTTAACATTTCTTCCATCCCTAGCTGTCTCTCAGCctttagtacatga----tgaaaaGGATAAtgga---tagaaaaatattttataaaggatGATATGGAGCTCTGCAAATGTGAAACATCATTATCAAATCAAATTTACTGCATTTAGAAAATTTCCATGTGGCTGGTGTTCATTTGTGTTGGTGTGTACGTGTGCACATCAGAGATCAGCATTCTGAAGTAAGTTCTAATTTCCTGTGTTTATGGATGGGGAAATTGAAGCTGACAGCAAAGTGATTTACACaaagttatacaaataaaaaaggaagtctTGGGCTTCAAATCCAATTCTAAACAAATTATCAATAAACAGA-ACAACAAGGGAAAGCCAAAGTTTTAA-GATTCTCATTTTCT---ACAGTAATTAGATAGGCAAAATAATGAGAGAAATCATAATATGCATCCCCAAGATATGTCATGTTAGCATGTGAACTATTGCCAGTCAAACTcaattaagaaacaaaagaaacaccaAAAAAGTATTCTCAGAATTTCCCTTCTCTGGCTAAAGCAGAAACTTCTCAAAACTGATGACTTCCATGAATACCCTTCCTCAAGACTTTTATTGccaagagaaagagggaaaaaagagaatacagCTGGGACAAAGCTGCACAAACAAGACTTACTAAAATGACTTTCTATCCCATTAGCTTCCTCATATTTTTATCTCCCCATCCTTTACCAT-CCTAGAAGCTCAA

a score=80645
s chr3           147696727 2001 + 160039680 acacaTCATCTAACTTTGAAAGGTAGACTTTTATGAAATCACCTGG----------------GTATCTGTTTAAATTACATTCAATGGTGATTGTGAGATCAGCATCATCT-----GCATAGAGTTTCAAGGCTGTCCTTGTCCTTGAACAGCCCTGTGAGGACAACAGCCCTGTGAGGACGTGTGTCTGGGGTGTACGATGTTGAAGCTCATGTGTTTGTGGTGATGTCATTGCCAACTCCCCCTCACACC-TTGTCTGG-CCTTCAAAAAGGCAACACACATCTGTTAAATGACTGCCTTTGGTCTTTCCCATAAAAGCCTAATTACTTTTTCTTAGGTGATAATTTTTTAGGCTATTTCTAAGTGCTTTAGTGTAAACAAAGCGATAAAA--------TGAACACAAACCCACTATGGGTCTA------AAGGCTTAAAAATCCATTCATAAAATGGTTATAGAATTGTGGCTGAGTGCTCAGAAACTTTTGTGCAATTGCATTAATTTTAGCTCTTAATGCATTTGTAAATAAAGTAACATAATTGTGATTTAGCTTTCCATCAAGCACAGGAACTCCTCTTAGCAAGGACTTGACTACAGAGATAAGATTTTTAAATTCTTGCAATTTCACTGAAGACTGCAATTTTTTCC-ATGAACTCAAAAAAGCCTTGAGCACACAGACCATTATAAATAGTGAATCAGAAAGATTGTTTGACACAGGGTTATCTCCTTTTCATTTATCACCCTAGACCCATCTCCTCATGCAAGTACCCTCTGGCCTTATTTCCATTGGTAATAATCTGTAATTTCTGCTATTTTCTCTTTTCAATACCACTGAAGAGTCAAATTTTCCTTAGGACATATTACCTATTTATAGCCATTTAGAACATTTTATACCAATCGGCACTTTGGAGCTGTATCTGACTCTGCAAGTAGCATTTCCATGGTTTCTGTAGACTTTTATTACATGGTGTGACATTCGATTGATGGACTGTCTCCATCATACTCCCTGTCAATTGTACACTGATCCATGACAGCCTAATGGATATGTGACAGTGTTTGGCAGGGTGAGAATGACTACAATAACATTTTGGAGTAAAAGGATATCAGGGTTTCTTTTAATATTCTTCTTAATTTTCCCCTCACAGGAAAACATTTTTTAAAGCTGAGAGCATATGATATGCCAATTGTCTTCATCTGAAAAAAACCTGATACCTGTTTTAGATAGGCTGTATTTAAAATGCTGGCAAAATAGCTGTCGATCAAGCTGAATGGGGCTATTAGACATTCCCCATAGCAAAGAGACTTCCAAGAACTCTCTCTGGAGGCAATTGTGTTGTGTTCCAGTCCGGGCCAAAGGTTATTGCAGCTAGGAAGATGTTCTCTGTTGAGAAAGGAG----AGAAGGGCTTACTACTTTGACAGCAGGGAATTGCTCAGGACTTGCCTGAGGAGATGTGTGAA-CTTCCTCAGAGCAGGCATTTGGAGACTGAGCCAGGGAGCATGCCTTTGTAACTAACCCTGGAGCCTTTGAACACAGAGACTTCAGGTTGATTTGCTGTTTCCAAGGTTCTACCTGTGCCCTCCCAAAGGTGCAGTAAAGAAGAGAAGAGGCAC-TTAAAGCTCTTCTTCCTTTCT-GGGATGTCACAGATAATTTGCAAT-GCCTGCATCTTTTGGTTTGGTTGGTAAGGAGGCTTCCAGAATACTCCCAGGAAACTTCTGAGATCAGCGAGTGA-------GGGACATCAATAGAACAGGAAAAGGGCTAAAGGGAAGCCATGACCCA--CTGAGGAAAGCTTGGGCATGAGCAGGAGGCAGGGAATAAAGGACTGTGCTTGGAGAACAAACTGCATGCAGCCTGTGACATGGTAACAGCCCC---CCAAAAAGAGCCTGGGAAAGGAGATCAGC-----CAGGAACAAATGACCATCAGGGCCCCTGCTCTCC-TTCTTTATCA----GTAGACAAGCAATGGACAGTTT-GGATGCTCTGAGTGTCAGTCTATTTTGTCTGAATATCTTTCAAGGTCAATTGATGTTT-TAATTTT
s HiC_scaffold_1 134400568 1998 + 233722169 ACACatcatttaactttaaaatatagtCTGTTGTGAAATTATCAGGTTAAACAGATCATTAAgcacttatttaaaatatattcattggtGAATATTAAATCAGTGTATCctcaaggacaaaaaa----aaagctGATTGTGTTCTTTAAC--------------------CCCATAAGG-----------GATTGCACATTG--GAAGCTGACAGTCTGTTATTGGTTACATTGTCAAAACACCCTCAAACAATTGTCTGGGCATTCAAAGAGGCAACACA--TCTAGtaa-caactgttttcagtctttcC-ACAAATACCTAACAATGTTTTCATATAGCCTAATATTT-ATGAGATTTCCAAAttgttta-tatgtacataatgaCCAAAAAGTCTCTCGAACAAACACACATCA-GAGTCTATTTTAAGATGATTAAGAAGCTATTCATAAAGTGGTT-TAGAATAATGGTTAAATACT--GATGCTATtatgtaattaaattaattttagattCTACTAAGTTAGTAAACAAAGTAA--GTATTGTAAATCAGCTTTTCATTAAGCATGGAAACTCCTGTAAGTGAAGA-TTGGCTAGGTTGATAAGATGTTTAAATTCTTACATTTTCAGTAAAGATGGCAATTTTTTCCCATATTCTCAAAAAGACCTTCAGCACATAGACTATTATAAATAGTGAATCAGAAAGATTGTTTGACATAGGGCTATCTCCTTTTCATTTATCTCCCTAGACCTATCTCCCCATACAAGTGCCCTCTGGCCTTATTTCCATTGGTAATAATCTGTAATTTTGGCTGTTTTCCCTTTCCAATACCACTAAAATGTCAGATTTTCCTTAGGACATATTATCTATTTATAGCCATTTAGAACATTTTATACCAATCGGCTCTTTGGAGCTGTCTCTGGCTGTGTAACTAGCATTTACAGGGTTTCTGTAGACTTCTATTACACGGTGTGACATTAGATTGATGGACTGTCTCAATCTCATTCTCTGTCAATTGTACACCGATCCATGACAGCATAATGGATATGTGACAGTGTTTGGAAGGGTGAGAACGACTACAATAACATTTTGGGGAGGATGGATATCAAAGTTCCTTTTAATACTCTTCTTAATTTTCCCctcatgttaaa--attttaaaaagctgccaACATAGGATATGTGAGTGTTCCTCATCAGCAAAAGAAATGATACCTATTTTAGACAAGTGGTATTAAATATGATGGCAAAATAGCTGTCGATCAAGCTGAACAGGGCCATTAGGCATTCCCTGTAGCAAGGAGACTTACAAGGACCTACTCAGAAGGGAATCCTGCTGCG--CCTGTCTGGGTCAAAGGTTATTACATCTTGGAAGCTATTCTCTgttgagggaagagaaaaagaaagatttactgTTCTCACAGCAGGGAATTACTCAGGACTTGCCTGAGGAGATAGATGAACCTTTCTCTAAGCAGGCATTTGGTGGCTGTGCCAGGGAACATGCTTCTGTGACTAGCC--AGAGCCTTTGAACTCAGAGATCTCaagtttatttactgtttcaaaaGCTCTACCAATGACCTCTCttgagaggaaggggaaaaagaacagaaactttGCAGCTCTTCTCTTCTCCTAGAAAAGTCAAGAATAGTATTCCTTAGTCTGTGATCCTTGGTTTTGTTGCTAAGACAGTTTCCGGGATGCTTAAAAGAG----CAGGAAGGAGTGGATGAGTCAGTTGGGGAGGAAGTGATATATGAAAGGCACTACAGGGGGCCCCCCACCCaacctggccattgtttcagtCCAAGCAGGGAGCAGGTTAGCAGAGCTTGCAC-AGGAGGGCTGGAAGCTTGCACTGTTTGATAAGATTATAGCTATGAGACACAGAG-GCCCAGTAAAGGTGATGGACAGATTCAAGGACAAAGGAATGTCACAGGTGCTTCACTCTATTCTTTGTCCAAATGAAGGTACACAATGGAAGGCTTAGGATGcac----------tttaatttatttaaat-tatgccAAAAGCATATGAtgcttataattct

a score=21886
s chr3           147699568 1885 + 160039680 AGAATCACCATATATGACAAATGAGATTAGGGGAAGTTTTGGTTTCTTGCAGGCTCCATCTGC-TACTTTCGTCATAGGACACATGAATCTCTTCCTTGTTTGGATCCATCTTTCCATGATCTCCTTTCAAGATAGACGCCAACACAAAGCTCTTCCTCATATGAACTTTTACAAGTCAATAAAACTTGATATGGTCTTTACAGCCTATGGAGGCCATGATGAAGGAGGTACACAGCCCAAATATGTTTAAGTCATTAAGAAAA---------AAAATAGAATAGGATATAAGCAGCAGTTTGATGTCAACTGTAGGCGCTGTGT-GCTTTAGTTCCTCATCCATAGTTTAGCCTATGCATTTCATCCTTTTACTTGTTAGTGGTTAATATGCTACTCATTCTTTTAGACAAGCATCTGGTCAGTCAATTCAGAAAGCACTTTATATTGAGCACTTCATATCTTTTGTTCTGAGC-------------TTATGCTCTTAGATGATTCTTACTACATTGAGAAGAAGAATGGGCGAACAGCTA----AAATACTGTA-AGTTGCAACTGTGGGGCTTGTATACAAGATACGTTGATAACAAGACTGCACAGGAGGCTGTCAGAGTCTATT-CACAGAAGCTGGGTTTGGACTGTGGGCCTAGTCAGAGCTCCTTAGGTTAGAAAGGAATGGTGCACAGGATG-ATAGTATGAACCACCCCAA-----GAAGTGAGTAGTTGAATGATGTGCAGTGGCTGCCAAGGGAT----ACTGAACTGTAGCACTGGAGCCAAAAGTGTGG-------------------------------------CAACAGCCAGCAGTTTCTAGCAATGCCACCTAGCAGCCC------------------TCTATGTCTTTA--TGTGCAGGCACAAGAAACT-----AGAGTCAATCTAAATGGACCCATACCCATCACAAGCATGTTTAGAAAAACTATGCCAAATGTCTGATATA-----------TGTCCAGTACAGGCTTACGACAGAACACATGCCACCATACCCACTAATCACTTGCCCATTGCTTTGGCCTGATAAGAACAGCCCCACCATGTGGGT----TTTTAAGGTTCTGCTCACAGCATTGGTTAACTCTTCCTTAGGATGACCTTGCCTCCCAAAACACTGAATGTATTCAGGTTCTGTTGTACTGTATACCTCCATTGCACATGTTTCAGGGTCTACATGCTTTTATACCCTTTTAAGGAAGTCACTGCCCACTTTCTGAAGAAATGTATTTGCCCT--CGTTCCCTGGCTCTT-----CTTGACCAGAAACCCCCAGAGAATCTATTTACTGGATCCTTATTTCAGGGTGAAATCTGCTTCCATTCTACCTGAAGGTGTCCAAGGTGGTGAGAGCCTTCCATCTCCTTCTGCCCCTTCTGGTATTTG--ATTTGCTTATTGATTGATCCTTCTTAGTATCTCCCTCCCAATTGAT-CCTGCCCAGTGGCATTCAAAAAGACTCAA--TGATCTATCCTCCACCAATGAAAATCATTACAAAGTATGCCTTGACTCTAGCCTCTTGTCTAATC-----------TAGCTACAGATTATTCTGGCCCTGCTTATATCCTAACTAGGCGCTTACTCATTGTCAACAAGTGAGATTTTAGCTTTACATCAACCTTGTCACATAATTTCTGGGGTTTG------AGGGAACCATGCAT----CCATTTATTGATAAAAGAAGAAAACTGCATCTTC---AGTCTGGAGCATCTCTT-------CCAAACGGGTTTAGGCTTTTAAACAGCA----------------ACGTAATGACATGCCCTTA--AGCATCTGGTCCTATAATTACCTGGG---TGAGCTCCTCCCACAGAGTCAGCACATAAGACACAGACCTACACTAACCTTCCTTACACCTGTACTGGTGATCCTCCTGATCAGAGATGCAAGCAGCCAGAGTAGTTGATAGACTGGCATGTGAGAGTGATAGC--AGTCTCTCTTATAACAAGGTAGAGAATCTAAGAAAAG
s HiC_scaffold_1 134416674 1953 + 233722169 AGAGTCAGTGTATGTGATAAAGAAATTTGGAGGAAATTCTGACTTCAAAGAGACTTTATCCGAGTACTTTAAGAATGTGACAGTTCTCACTTGGCATTTCTTGGCTTTCTCTTT--GTAGTCTCTATTCAGTGTGGCTGCCAGAGGTGGGCTGAAACTTCACTGCTGTTTTTCCAGCCAG-AGAAGTTGAGATGGTGTATACCACATGGAGAGCTCATAGGAAAGG--GTACATTGTACAAGT-TATTTTTGTCCACAGGCAAGTGGTGAATGAATATTGAGTGGCAC-TAGACAGCAA----ATGTCAGCTGCCAACCCTTGGTCACTCTAGTAACTCCCTCACATGTTGTCTTTTGGGTTTCATCCTTCT----------GATCAGTCCCTTACTCATTT---------ACCAATTAGTCAATCAATCCAGT----------TATTGGGCATCTATGTGCTGCTAATTTGGGCCACAGCAATGCATTTCTACACTTATGGAACTCTTACTCCAGCGGGAAGAAGAA-ATGTAAACATCAAGTAGAAACAGGGAATAGTTCTAATTATGGGGTTT-TGTGCGAGACACTATGCCAACATGACAACACAGGAGGCTGTTAGAGGAGGTTTCACGGAAGCTGGATTTGGACTTTAAGCCTAATGAGATCTTTCCAAGTTGGGAAAGAATTGAATACAGAAAGAACTGTATGTACAATTGCAAAAGTGGAGGTAATGAGAAGACTGATGT--------TTTTGAGGGATAGTGACTGGAGTGTGTACCTGGAGAAGAGATTATGGAGAAAGAGATCACAGAATTTGaatcagaagaaatggacagaggcCTATAATTTCTAGCCACCCCAACTGGCAGCCTGTGTGTCGGGGTACACCAGCCATTCCTCCGATTGTGCAGTTATAGGGAACTGCTGGATGGTGATCCAGGATGGGGCCAACCCAATCGCAGATTTGTTCAGTAACTTTTTGCCAAATTCCTGCTATGTGCAGAGCAGCTGTCCAGCAGAGACTTCC-ACTGACTGCA------AAGACTCAC-AATCATCT--------------------------ATCTCTACAACGTGACTTCTCTCTTCAACTCCTGCCCACTTATCTCGATGATTTCATCTTATGATGACCTTgcattttaaaagactgaatatAATCA-GTCATGTCGT----TGTCTCCTCCTTGT-----CTTCGGGATGTGTCTACCTCTACATTCCTTTTCAAATGTTACCATCCATTCTCTGAAGATAAGACTCTTCTCTTCTGCTCCCTGGTTCCTTAGCACCTGATGAAAGAGACTCATCTGCTCTATTCACCAGTTACTTATTTCC-TGTTAAATATGCTTCAGTGTTGCCTGATAGAGTGGACGATGGTGACACTCTTTCATCTTC-CCTGCCTCCCTAAGGCCTTGCTACATCCTTATTACT---TCCTTCTTGTCATTTCCCACTGCATTGGCACCTGTCCCCTGATCCTCAAAAACACTCAGATTAACCCATCCTGCctaacaaagaaacaacagaaagtaTGCGTTTGTTCTAATCTGCCTTTGAATTCTTTCATTCTATGAAAGCAGTTTGTTCTTGCACATTTAATATCCTA--TAAGAACTTATTC--TATAGActcttgaaataaattttttatgtagAACCAATCACATATTTTGTAGTGTCTGGTACAAAAGGAAATTTGTATAAGGCcttttgtt--caaaagaa-aaaacttttttttccctaattCTAGGTGTCGCTTAACCTTGtcagaaaactttttatttatcatttgcaGTCACCTCCCCAGAGCACATAGATACCTGCTGCAGGTGGCTTCAGATACCAAAGGCACCTAGGATTTGA-------CCTGAGAATCAGTGCACATGACACATGCCAAGTGCCTCCCTCCCTACATCTATACCTGATACCTCACTGAACACAGGTAGCAACAGACATGG--GTCTCTGAGTGGGTGCAGGAGGACAGTATCTTAGAATCCCTTACAAGAAGACAGAGAAGCTAAGACAGG

a score=60722
s chr3           147702335 2750 + 160039680 CATCTTGCAACTTTTAAAAGCAACTTTTAAATGGGCTATTAATGCCGGGGCTTGTTTGAGGC-TGATTGAAGC--AGGGCAAAAAAGAAAACAAACCCCACGACTTGCTATATAATTCATTACCAAGAAGTGATCAGGGGTCTTTGTTCAAACTTTACCAATATTGTATTGCCGTCAGTCTTTCATTCATCAGGGATC-----AAGGGAAATAATTTAGATGATTTATTCTGCAGCTATAGGCACCCTTCA---AATACTGTACAGCATCTTCTTTACAGGAAAAAATCTTTTAAAAA--------AAGTTGTTTCTTTATGAAGAACTTGTGGCCTTTGTGGAAATTGTTCCAACCTGTAAGCAGGTGCCTTTTTTTTTTTAATGAAAATAAGTTTT---AATTTGTACCCATCAGATGAGAAAACAAAAGAGAAGAATGTCATAGACTCCCACCTATCAAATAATTGGAGTC-TTGTGAATGGGCCCTAGGTGAC-CAGCAACATTAAATAAAAGATGAAACAGAAACACAACTCTTTGAATAATACTGGCTGAAAGCAATTTCCTTCTCAAAGGGAAGGGTACTGCTGATCTGCAAGTCACAAATCTGGGAGACTCATGCCGGGCCTGAGACTTTGATTGCCTTGTTATTAAAGAATAAAATAT-TCTTAATCTTATATAGCTGAGGACATGTAAAACAAATGTGAAGTATTC-GTGACAAAGTAGCACAAATTCC-----CCAAAAGCAATGGGGTTAAGAATTATTCTTTCAACTCCTCAGA-------------AGAATTAGAACACACATGATCGCTGCCCTGCTTCCCGCCCCGCCCCCCGCCCCAGAAAACTATGCATACACACATGTGCATATGCACACACGTGTTAAGCACTGCAAGAGGTTTCTGGCCAGGGTCTTATTTTAGATATTAATTCTCAGGATGCCAGTTTCATCTTTATTTTGCTAGAGATTTATTTGACAACAAAAATTAAGAGCCTGAGGATGTCTTGTACATTGAAAAGCCTCTCCCAACTACGGTTGTGTTTTAGGAAGTTCTTCCCTCTCCTGTGGCCCT---CCTTTTATATATTCACTGCCTCTGTGTGAAGAGAGCCAGTATCTTTGACTCCATGAGAGTCATTTAGCTCAATGCTCCCTGACAGCTTGTATTCTTTCCCAGAAATGTGAAGTTTGAACTTTAAGAGAAAACGGATATATTTTACATTTTTAAATGGA---GTTCTGTTCTAAGCACATTCTTCTGCCAATATTGATAACGGTAAAAGGTTAATG---aaaaaatatatatata-ataaaGAATGAGCCAGCCAGGAAGACTCCAGGCAGAAAGAGAATTGTCTGGCCAGATGATATGATTCC--ACAGGATAAAAGGGGTTGAGACTTCACTTAGCCAAGTGGAGCACCAGGATACTAAAGCTCTGAAAATTAGCTTTGATAGATGCAAGCCAGAGAGGAGCCATACTGTCATTTTTacacacacgcgcgcgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacGAAAGAATGGTAGCAGTAAGGT-AAGAGGTGGCTAGC----------TTTGAT-GAATCTCATCTGGAGGTTGAGATTTATAGCCATCTCGCCAGATCTTGACTGAA--ATTGTTATAATGACTACAAAAGGGAGCCCCTTGCTGTGTATTTTGTGATTCGTTTTTCTGCATTCATGCAATA--TTTACATGTGATAAAGGTCATTGACCTTTTCT-TATTTACCCAATGCTAGTCTTTTAATCACACTGAGGGCCTGAGAACATTAATTTTATGCCATACTTTGGGCAAT--TGTAGTATTAAAGCTTGGTTTATGAGATTCTCTGCTATGCCACTGTAttttgagataggattttactgtggctagactagaactctctgtggagactaggctgccctgcagctttcggagatcttcctgttctgcctccctagaacaggttttccaggcacaaccaaaatgctcagctACCTTCGCAGGTTCTCTGCATGGGCCATGGATCTCTTTTACTTTTATCCAGCATAGGACACTTAAACCAGATTTTGCTTCCT---TGTGTTTG--CGAATGCTGTGGAGGTTGGAGTGGCATA-----TGGGAAAGGGGCACTAAAGGGTGACCTCTGAGCATGTGCAGGCCAGTTGAACAACAGTGCCTTCTTCCATTGTCCTGCTAACCTTATCAAACTGCCATGCT-----CTTTTTCTCACTTTAGCAATTAATGA--TCTTAGAACAGAGATATAATCCTGA-AATATAATCAAGCAATTCA-GGATAATAATGCAAGAGTCTTTGTCTTTGAAGAATGATCCCATTCTATTGGTCTTACATCACCTGTCCAACCCTCTGGAGGC-------AAGTATTCTAAGGGCATTCTCTCTTTCCCCTCCCTGGGAGG-------CTGCAGAA----CTACAGCAGATATGCACTAATTATAGCCACG-GGAAAGGTGATGGATAGCATGTCTTCATTTCATTATAAAATCACTTAGATTATTAAGGGTAAATTAAAATTCAAATATATATCCGGTAAGCTGGGGGGTGTATTTCTGAGTCAATCATTTTATTTGATGACTTGATGACTTTACTCTGATTTTTTGATCATTTTTAGAGTAGATTTTCAAAGTTTTATAAAGAAATCATCTTGTATGACAGAATATGGCAATCTTTTTTTTTTCCTGTGAATTTCATGGCGTAAGCATTGGGCTTTCAGAACACTTGAAATTTGCATCTAATTCATATGATTTATT-GAGAATTTCTTCATAAAATTCAAAAAG
s HiC_scaffold_1 134421688 2494 + 233722169 CATGCTGTAACTTATAAA-TCAATTCTTGGGTCAGATTTTGTAACAAATGTCTATGTGAGATGTGACTGAGCTCAagtgggaagagaaaagaaaaccccacaGCTTATT-TGTACTTTTCTGTCAAGTATTAAACTGAAGTTTTTGTTAAAAAACTAGGAATATCAGTTTGCTATCAGTCTAGCAGACATGAGGGGACCAAGAAAGAGAGATAATTTAGATGATTTAAGCCATA-CTATAGGTACACTTCAGGTAATTCTGCAAAAT-TCTCCATTTCAG---AgagttttttaattattttttttaagttgctTCTTAGTGAAACCTTTGTGGCCTTTGTGTAAACAGC-CCAGCAACTAAGCTAGTCCctaattttt---aatgaaagtgattttttttcacttgcgTCCATCAGATGAGAACACAAGAGAGGAAAATGTCGCCGGCTGCTGCCTATCAAATAATTGGAGTCCTTGTGAACAGGTCCTAGATGACATAGCAGcgttaaataaaagataaaatggaaacaagacTCTTTGAATAATACGGGCTGAAAGCAATTTCCTTCTTGAACTG--GGGCACTGCTGATCTGAAAGCCACAAATTTAGGGGAATCATGCAGGGCCTGAGACTTTGATTGTATAGTtaataaaggataaaaaaaatcttcattttatacAGCTGATGACATGCAAAACAAACTCAAGATGTTCAGTGATAGAGTTACACTAAttccaaatataaaatgtaacagGAGCTACGGCTGATCTTTCAGCTGTTCACACACTTACACCTAGAGAGTCAGAcga------attgtttttgtcttttcccctCCTCCTACCACT-----------------------------------------------GCACTG----AGGTTTTGGGCCAAAa-cttattttagatattaattctCAAGATGCCCACATCATCTCTGTTTGGACAGAGATTTATt-gacaacaaaaattaaatgcctAAGGACTTTACATGTATCAAAAACCGCTTGCCCACTAAAAGTGTGTTTTAGGAAAC-CTTCTCCTTCCTGAGCCCCCAACCTTCCTGTCTTCTCCTTGCCTCTGTGTGAAGAAAGCCAGGATAGGGGACTCCATGCAAGCCATTTAGCTCAGTGCTCCCAGACAGCTCTAGTTTCTTCCCAGAAG---GAAGTTtgaa-tttaagagaaaataaatatattttacattttttaatgtacTCATTCTGCTCTAAGCACATTCTTCTGCCAATATTGATGATGGTAAAAggttaatgaaaaaaaaatatatatatgtataaagaaTGAGCCAGCCCCTGAGACTCCAGGCAGAAAGAGAATTGTCTAGCCAGATGACATAAttccaaaaaagataaaaggggTTAAGACTCCATTTAGTGGAGCACTGTAACGGGACAGAAATGTTCTGAAAATTACCTTTGATAGGTATAAGCAAAATGggaa-aatggaattattttttaatgaatg----------------------------------------------------caagaaaaaatttaagaaataaggcAAAGAGATGACTTGCAGAATGCCCATGTGACAAAATTATATCTATAAAT-----GCTGTAGTCATTTTA-GAGAGTTTGTCAAAAACATTGTCTTAAtg--------tgagagtttttttttttgt-tgttgttgttcttttctcTATATCCTGGAAATATCTTTATATGTGGCAAGGTTCAGTGaacttttccatttctatttaatGC-ATTTTTTCCTTCAGGTTAAGGTTCTATCAATGGGAATAGAATTCCATGATTTTAGTAATCACGGGGCATTTAAGTATGGCTTATTACATC-----------------------------------------------------TTCTTAATGAAGACAA--CTTTGCTGTAaccttggg------ttttgtttttc-----------------------------------------------tcccagGTTAT-------------------------TTTTCAAACAAGATAGCCCAGCTGAAAGggaatctgtttcttgtctgtgtTTGGTCCAAT-CTGC---AATTGGGAAGACATGCAGCTTGGAAAAGAGAGAATAAAGACCTAAACCTGAAAAGTAATAAATCAGTC---TAAAGGTGAGTTCCCATAAAAGGCT-TTCGGCTTATCGAGGTATTGTATTGCAGGCTTTCCATCCTCTTAGGAAACACTGAAGGATGAAAATGGAGATTGTATCCTACTAACATAATCAGACCACTTATGGATAACAATGCAAGGTCCTTAGTCTTTGGGTAATGATT---TTTGACTCATATT--ATCACCTGAAATACCCtccagaggttaaaaaaaaatgtctgatttacttgctctgttt----ttcttgaGAAGAGAAATATGGTAAAAATTCCAACAGTTAATGTGCACTAATTATAGCCATGAGGAAAAGCAACGTCTGCTCTATctcaatt---gtataaaattacctag-------GAAGCTAATTAAAA---------------------CTAGAAGGAGTATATTTGTGTCAAT-ATTTTAT--------CTGATAATTTTAATTTGG-TTCTTGATAATTTT---AGTGCCTTTT--AAGT--------GAAACAGTTTTGTGTGACAGAAT-----AATGTATGTTTTCT----TGAATTTCAC-TCATAA---------TTTCAGAACTCTTTGAGTTTGTATCT-ATTTGTGAGAATTATGAAAGCATTTGTTCTAAGCATTTTAAAAG

a score=49413
s chr3           147706791 1792 + 160039680 aagtatttttaaaacctgccagcttgacaaccaatcctagtctttacaCTAATACTTCAGAGTTATCACCAACCTGTTAAACCTTTCGCCCTAAAGGATTGTTCGTTTCAAATAGACTTTTCTGAACATTATGCAAATACAA----AAATCACA--------ACAGAAGAGAAGCAAAGGCGTTTCT--CCAGGTTTGCGCGATGTTCGCTCGAGTGTAGAAGTTCGGTTTTCTAAAACTCTCAAACCTCCTGAAAGGCTGTGGGCTGAGCTTTCT-----AATTCTGCACTCCTGGGACAGCCCAGATGACCCATGCTTGCCTGCTCCTGGGGTCTGCCTCCAGGACAGCATGCTGAATTCAGCCCCTCCAGGACAA--CCTTTTTTTTTTCTTTAATTCCTTATTTAGCTGAACTATAACTATTATTAAACACT-GCTCATGACCGCTCAAAGCACCATGCTGGTCAACAGAGGACTGAGACTC---TGTTCGGAGTTTACGGGATGCGAATG-ACTTCCTTACAGGTCCTCTCTGCGCTCCTTGTTTTCTGGAACTCCAGGCATCTGAAGGACTTTTCCCTTATAACTCCAGGCACAGATTTTCTTAATTTCTTTTCCCTGGTGGTTAGAGAGCAGGTTTG-AGACATGTGTGAGAGGAGGAGGATTAGGAGGGGGAA--GGGCTATGACACATTTTCATTTCCAGCTGCCATGACTCCCAGGCCTTAATCCAGCCCAGATTTCAATGGAAACTTAACACCACCCCAGCGACCCTGGACTTGCAC-AAAGCCTCAAGCCACCAAATATGGAAAGTCGTTTGTCATCTGAACCATAAATGTTTACATCCACCAGTGACAAATGTATAAAGACCATGGAGTGACTGACGGTGTGATTTCAGCTGTTCTGCCCAAGTCTGTCAAGACTTACTCTTATCTCCCCAAAGCCCCAAAGACTGATTTCTGCTGGCTGCATAGGAATGTGCCCTCCAGCTTGTTAACCTACTCTAATTGGTCACGATGTCCACATTTGTCACCTAGGAAGTTGTTATTTTCCTTTTTCGTGTAGGGCCAGGTGCACACACATTTGTTAGGTGGGGCTCGCAAATGGTAAGCCTCCTCCTG--CTTCCTGCTTAACATGCTATAGTCTATTCC-AACCTGTCTGAAAGATCACCATTTCTTTTCTTCACTTGACTGAACTAACGACAAGAAA------ACAATTCAACACCAACACCTTCCTGACTGCTGGTTCCCGCATATAAGTGATTTAGAGATTAAGTCTTAATCGTGGGTCTCAGTACAACTTAGGAAC-AGCCATGGAGTTGCTAGCTCTATTAAGGTGACTATA--GAACAAAAAGTAACACAGAAAGATTTTCAAGCATGGCATGTGTAATCGT---------ATGAACTGGCCTGGATGAAATGTATAAGCAGAG----------------TTAAGTTTTACCATCA-----TGGGCTAGTAAGCAAA--GCGAAAATAGTACCACAGTACAGTGCAGTTGGTCTTGCATAGGATAAGTTGTTATACCAAGAGTCTGTTGCTCTACATTTACTAGTTAAAGAATGGTTAAGGCCAACTCTCaatattaaaatcatatttattttaatatgaaattgaatatattaacatttataaaCTTGGATAATTCAATTATCAATGACCAGAATTCATTTTAAAACTAAGATGACTGATGTTGAATATATATATATATATATagagagagagagagagagagagagagagagagagagagCTGTTCCCAACCATAATCTTTAAGAAAAGCAGTTACAGACTTCTCTAAAATGATATAGAAGTTTTGATAAAAAAAATACA
s HiC_scaffold_1 134427861 1722 + 233722169 AAGTAGCTTTAAGAccaga-attttgaaaataaaat---gttttta-----atactttataa-----------CTGGTAAAAGTT---CTCCTGATGATCATGCACTTTAAATCGATTTTTCTGAGTACTCAGTGGTTGCAACTGAAGATCACAGTTGGAGAACAGAAGAGAAACCATTGTCTCTCTGACTAGCGGTACACAGTATTTAACAAAGTGCAGAATATAGTTTAGCTAAAATGT----ATTTCCTTAATGGCC-TCTCCTGGGCTCTTTTACAAAGTCCTGCACTCCTTGGGCAACACAGGTGATATCAGCT-GCCTGATCTAAGCATCAACATCTGGGAAAGAGCTCCAAGTTTATTTCATCCAGGACAAGCCactttcttctttattaattCCTTATTTAGCTTaactataaatattattaaacatTTGCTTATGAACTGCCAGAGCACCATGCTGTTCAGCAGA----TGAGGCtggtgtgttttaattttatgcaCTTTGAATGTGCTTAGTTTAGTTCCCCCTCTGCACTCCACATTTTCCTAAATTTCAGTTATTGGAAAGCTTTTCTGCTTACAACTCAAGGCAcagattttcttgatttttt---cctgGTAGT--GGGGGTTGGTGTGGAGACCTGTGTGGGAGTAGGAAGATTATGGGGGTGGACTGGGTTATGACACATTTTCATTTGCAGCTGCTACAACTCCCTAGCCTTAATCCAGCCCAGATCTCCATGGAAACTTAACACCATTCCAGTGACCCTAGAATTCCACCAGAGCCTCAAATAACCAAATCAGGTAAGTCATTTGTCATCTGAGCCATAAATATTTACATCCACCagtgacaaatggataaagagtGTGGAGTGGCTG----TGTAATTTCAGCTGCTTTACTCAAACCTGTCAATAGTTCCTCTTATCTCTTGAAAGCCCCAATAACTGATTCTTGCTAGTTGAATAAGAATGCACTCTCCAGCTTGTTAACTTACTCTAATTGTTTATTATGCCCACATTAGTCACCAaggcagtttttattttctatttaaatttaagGCCCTTTGCAAACATATTGAT----TGGGGCTCACAAACAGTTAGCTTTCTCCAAGCTTTACTTCCTCTCATCCTATCTTCTGTCCCTAACAAGTCCAAAACATCACTGACG-TTTGCTTCACTTGACTGAACTAATAGcaacaaataactgaaaattc----CTCCCACTTCACT--CTGCTGGATCCTGCTTATAAGTGACTTAGAGGTTAAGACTTCATAATGTGTTTGAGTATAGCTTACACGTAAGGCTGAGAGTTTCTAAGCATAATAAAAT-ACTGTACTTGAGAGGTTGTAATGTAAACACATTTTCAAGCAT-GTATGTTGAAAAGTCTTTCCAGCATTTACTGGCCTGAA-------AATAAGCATAGAAaccagaatttttgtttttattcttctatcAAGATTTGTTCTAGGAGGAAAAATGGGAAAGTAGT-----AAAATTATGCTGTTAGTCTTCTATCCACTAAGTTATTATGCAGTGTTTGTTTTGTCCTATATCTATTAGATAAAGAAGTGCTAGGGTTAA-----ACTGCTAGAGTGGTAATAAT----ACATTCAATGGAA---------ATATGAAAGCTAGGagaattcaaatttaaaaga---------actgtAGGA-TGTGTTGGCTTGCACTGACTACTTGCACATACATGT------------------------------------------------TTGTACTCTTTGATCAAAAGGAATGTGGATTTCTCAAAAATGCTGTAGTGG-TTTGATAGATAAAATTCA

a score=70561
s chr3           147715129 3615 + 160039680 ATCAGAAATGTTCAAATACAAACTTAGTGGTAAATTT-CGGCTAGTTGACCTTGAGAATGTCACTGAACTTTGTCATGCCTTGTTTTTCTTAGTAGTTTGGAAGAGGATAATTCAGCTGTTTATTCCGTGGAAATCAGGGAGTGAGGTCTTTTTTGTTCTGTATGAGTAAGAGAAAATGCAAGGCTGATCACACCTGTGAGG-CTGACGTGTCCTGTCTTCCTCACAAGGCTTTTGAGAAGCTCTTGTTAGCTATATGGACATGTGTCTTGGCAGAG---------GGAAGCTTTCTATAAACAGATAAAATTGTCACTATAGTGCAAAAAGCTGCATTG------GGTGAACAGCCTCACTCAGTCTTCAA--------------GAAATTCATTTGCAAATATTCAAAAAGTCTTGAGGAGAAGGACGATGAGGGTCCTGTCTCATAATAAATAAATACATAAAAGTCTTAAATGCAAAATCAATCTTTGAAAGAGCCAAAACCTACTACACATCTCCTT-----CCTTTTATGTAACTGTGTGAATGGATGCTGTCTGCAACAGTAGCTGGAGGCATATGCAATAGTAATAGTTCTATATCTTTATTTTGTTTTACTTGAATAATCCCTAAACCCATTCATTCTGATCTGCATGCTCCTCTGTCATGTTTAAAGTCCCCATTCCATGTTTTTATCCCAAATTTAAAAGTTCTGAGCCTGCACAGTGACAAACCTCACTTTTTGAAACTTGCTTTAAACCACGATTCATTAGTAAACTTGGTTAAAATGTATTGTGCTATACTTTCAAGTGTTACATTTAACTCCGGAGGCTTGCGACTGAATGCTAAAGTACTGAAAAATA--ATGTAGTTGGGTCAGGGGAAGAAG----ACATGACTGAAGACCCTCTAGTCTGATTCAGACACTTGCAGCTGAGGTCTGTTTCTCTATGGCACTGGTTGGTAGTCTTTGTAACTCGACTACCTCATAG-AGTAGGATGGCTTTCTCC---CAACTAATGTTTCTTCT---GGAATCACCCTTGAAAGGTACCAACAGTTC-AGTTGCACATGCACACAGATTGAATCTACACTGAGCTGACACAATGC---------------------------------------CTAGCACAATGGATTCCTATGTTACATGATTTA------------TgaaagaaggaaaggaagaaagaaagaaaggaagaaagaaagaaagaaagaaagaaagaaagaaaggaagaaagaaagaaagaaagaaagaaagaaaggaagaaagaaagaaagaaagaaagaaagCT-CAGATTGCATTGCCATGGAGAAAACATATGGCATGTCCTGAGCCACCTAATCAGGTTACAACTAAATAGGTCCTCGAACCTATCAGTGACACAAGAAGTATCTTTGGGAATATCTTCACTTCACATGCAAGGGTTTTTTTTTTTTCTTCAAGTGCTTCGTTATTCATATGTTATGAGCTGATCACAAGACTTGGCTTAGATTCTCTCCTTCAGGCACGTTGGTCTCCAGTGACCTGTTAAAACAGGCTTAGCACATTCACAAGGCTTTTCATTGCAGTCCAGCCTGTTTGTAAAAGCGATCCATCAATATCATATTCAGAAGACAGTCTCCATAGAGCCTGCCTTTGCTTAGCCAGCCTGCCTAATGCCAAAAGCATAGAATTCCTACCCAATAATGACATCTTGAATGAGCTTGGGTCAGAAGCATATTGCATTCTTTTTTAAGACTGTGTTGGGtttttttgtttttttttttttttgttgttgttgttttttgtatttttttCCTCCTCTTCAGACATTTCCTCGCTTTTACAAGGCTATAAAAATAGGAACACATTTTTCTTTCCTTTGAAATGAGTGGTATTCACCTCAGTGGTACGCTTTTCTGGGGCGAGGGATAATTAAATCTGCATGCAAA-AAGGAGATATTTACAAAGTCATGATTTTGATGTCATATGCTACATCCTAGCCCAACATCTATGACATCCCATGCAACCTCTTCTTGTTGACATCAACTAAGTTGTCTGGATTGACATGCATAGGG--TGTCACTTACAAAACTTTATGATTGACTCCTAAAGAAGCAATAA----AGGGGTTCTCCAAAAGGTAGTTTTCATAATTGTTACCTGCACCCTGA--TGATTCTTATCTTTGCAGGAGAATACGTGACTAATTAGAATGAATTAAAAATAGCCCAGAAAGTTGTCAGTGACAGAGATGCATCACATATACCACTTGTAGTCCAGAGGCTGGACATAAAACACCCACTCTG-------TAGCAGTTCTTAATTGAGCCAAAACTTGGCATTGTG----TTTTTGAAAAGTTTTAATGG----CAAAGACTTGGGGGAGACCTCACTTATTATTTTTCAATATT------------------------------------------------------ACTGCC---------------------------------------------------------CTATTTGAC--------------TGTTTTCTCTTTCCCAGGGTGGGTTGAGATTGTACACAGCATGTGTCTTTTCCATGGATGTGATGCTG--TTGAAAGAAATCCCCTCCACCTCCTTTCTGCCTTCAGCAGAACCCCCTCTA---TATTCACTAAGCTATCTTGAGCTCTTAATATTCAAAATGCAAACATGCCCCCCAAAGCAGGATTCCATATTTTA----AACAACACAAAAGGAGTGTAAAATTTGGTTTGTTGCATAGTGAAGTAGCTCACAGAAATCCCCACTGTTTGCTC------TTTGTGTAATAGACTGCAACTAGCCTACTTGTATGCCAGACACAAAAATAT-CCATATATTCTCTCCATGTTTTCTTATGAAGCATGTCTAATGACACATTACTCATTAAAATTCTATCTACCTT---------TATGAACTCATATACAAAATCATTAATCATGCTCAGTTTTATTTGGCTGATGTCTACAATCATTGTAACAATCCTAC-AGGGAATAAAATATTAG-AATATCTACTCTATGGTCACTGAAACTGGCACATGAGGTTAATAGATTTCTATGATATGAGGACTA------ACCAAAAGAAAGACTCTAGGCAATTTTAGCTGCCTTGCTAATCCCATGATAATAAATGTTTCATTACACTCAGTATTGTGAAT----------------TAAGAAAGAATTATTTTCACACTATGGCTTAGTGAGTGATGAAAGCAAAACCCAATAAAGCAATGATACTTGGTTCTTAATGGTAGGTGACAGAGGTAGACTGCTAAAGCTCCTTCTCTGTAACTCTCATTCTGTACTATGGGCTACCATCCCTTTAGTGACACCAACAGATTCATGGAAAGTTAATTCTCTTAAAATAGGATAATGTACATCGCTTACTGGTTACCTAAGTTTCTGCCATTTTGTGCCTAGCCTGATGAGTATGTAAGTATTCTTCCCTTCTCTATTATACTAAGATACA-AATTCTGGAGTTCAAAAGTGCAAGACTATTGGCCTCATTTACCCATGAAAGAAATCTTTTGCCGTGTGTACATACATAAA-----TTCTCTAGACTCA------TGCTTCTTTACTCTAAAGGATTTCCAGCATGTGTCACCACATCTCATCTTCTGCAGTTCTCTTCATGCTGTTGATC--GTTTATCATCCCACTTCTGTTTATTTATCCCTCTGAATATGGGTAATCATTG-TGATACTATGAAGAAGGTACCTAGG---TGTATAGGTTAGATAAATTGTTTGATTAATTTAAATTATAATTTCCTTAAGAGAAGTCAGCAGCATGGTACTATAGGGAAATTA--AGTTCTACCTTCAGAGGGACCAGA
s HiC_scaffold_1 134431370 3555 + 233722169 ACCAGAAATCCCCAAAACTAGTCATAGTGGGAGCTTTTCAACAAATAGATTTTGAGACTATCATTTAATCTCACTGAgctttgattttcttatt-gtttgaAGGAGGATAATTCAaccatttattcaagaaataccaataaa-aatgtcCTATGTACTTAACatcaaaatgcaaaatatcaATCCCGCCTTTGCCCCTGAGGATTTACTCACCCTGTCTACCCCATAAGAATTTTATGAAGATAAAATTAGATGTGCAATAATATgatttggcaaaatttttttaaaaaaactttctaaaaacaaataaaattctcCTCATCATGCAGaccattacttttaaaaatgataaagagcAGTGTTTATTCTTTAGTGAATATACCTTAGGGAATAGATTTTCAAACAT-CAAAAACCACACACCAAAAC----ACAGGGGTGTGCCCTTATTTTGTTGAAATAAACACAAGGCTTTAATGCTAAA-----------------------ATGTTAACTATCTCCTTATATTTCCTTTCTATGATCCTAGGAAAGGCAAATAGCAATAACAATaactttttttatatatttgagtaaTAATGGCA---CTTGGTCTTACCTTATTTGCATGTGTCCCAACCTAACTGGTTA-------------CCTCTAAC----TCAAAA---ACATTCC--GTTTTAGTTTGGCAATTAAAATCTCTGTGTGTGCACAATGGCGAACTTCTGTCAGTGAAATCTCATTTAAACCGTAATTCATTAGTAAG------GAGAATGTATT----------TTAAAGaccaaaatttaaattaaagaacTTGCAGTGAAACATTAACATTCAGAGAAGAACTATACAGTCGGATCAGGTGAGGGAGTACGAGATGACTGAGAGCCTTTTGCTCTAAGTCATATGTTTAGTGTTGAAATTAGATTCTGTGTGGGATTAGTTGGCAGTCGGTGCAGCTTGCCCATTTGgaaggagtctgattttttttttttttcaatgagagtttcttttttcattattactCTTGAACGGTCCCAGTAGTTCTAGTTACATGTGTGTTTGGAATGTTTCTACATTGAGTGGATGCATTACATTCCCTCATGTTTATTTCAGACAGGACTTCTATCTGTTTTAGTACAATGGATACCTGTTCtatgggattttatttttttctttttaaaga----------------------------------------------------------------------------------------------------------------------gctgTGGATCAAAGTGTCATGAAGAAAACATATTGCATATCCTGAAACACCTAATCAAATTGCAGCTAGAAAGGTCCTTGAAAATATTAGTGACACAAGAAATGTCTTTGGGAATATCTTCAtcttacatgta----tttttttttttttctgaagtgctTCATTATTCATGTATTATGAACTGTTCTTAGGATGTGGCTTAGATCTTCTCCTTCAGGCACTTTGGTCTCCAGTGACCTGTTAAAATGGTCTTAGCACATTCACTAGGCTTTTCATTGCAGTCCAGCCTGTTTATAAAAACGATCCATCAATACTGTGTTCAGATGACAGTCTACGTGGGACTTGCCTTTGCTTAACCAGCTTGTCTAATGTTGAGAGCGTAG-ATTTCTATCCAGGAATGACATCTTGAATAAGTTTGGGTT-GGGGCACAATGCATTCTTCTTcaagtctat---------------------------------------tttattttattttttttttcctcttcagacATTTCCTTGCTTTTACAAGGCTATAAAAATAGGaacacattttcctttcctttgaaatGA----TGTTGGCCCCAGTTTTCCTCTTCTCTAGAGT-----ATAATTAAATCTGcatgcaaagaagaaaatgtttatgaaatCATGATTTTGATGCTATATTCACC-------CCCAGTATCTATAACAGTCCATTGCACTTCTGCTTGTTGACATCAACTGAATTATCTGAGCTGATATGTATGATGTTTATCCTTTATAGgatgtt--------tttcttcaaaagtaaTAGGCCCAAGAGTTCCCCAAAAGGTAGTTTTCACAGTTGGTAGCCACATTCTGGACTGATTCCTGTCCTTGTTGCAG---ACTTGACTAATTAGACTGAATT-AAGGTGGCTCAGAATGCTGTCAGTGACAGATATGTGACACAGGTGCCAGTTCTAGCCCTGATGCTGAAGATGTG--GTCTACTTTGCTCACTTCAGCAACACTTGATTGAGCTTCCAACTGGGTTTGTGTGtatttatgaaaaatgaaaatggttcTCAAAAA----GGGGTGa-ctcactttttattctttttttttttttttttcctttttcctttttcctttttattggtaccgggaatcgaacgcacgactgcctgcttgcaaggcaggcgcttatgccgctgagctaaacctccagccccactttttattctttttaacacCAGTCACAAGTGAACTTTACCTCTCATGGGGTGGGCTGAGCT--GACAGAGTGTGTGCCTCTTCCCTCAATGTGACCCTGGCTTGAATGGGGTCTCA-CCATTTCCTTTCTGCCACCAGCA-----TCCTCTAGGGCCTGCTCTAAATCAGCTTATATTCTTAATAGTCAAAATGCAAAGAGAATCCCAAGAGGATGATTTCGTGtgccaagggaaaaaaaaaaaaagagcatgaaaGAGTGTTTGCCACGCATCTTTGTAGCCCCTGGTAATTCACACTGCTTATTCTACTCTTTTAGGTAGAGAGCTGCAAACAGTTGACATTT-TGTCAAACTTAGGATAATGTCATAG------TTGACTTTTTCTT-TATAGAATGCCGAAGTATACATTACTCAAAATAATTATATCTAAATTTTCTGAATATATGCCCTTATATACA-----GTTAATC--------TTGTATCTTATTGTT------AATCCCCTCAACAACCTTATGAGGAAAGATAATATTAATTATCCCAGTCCTACATTTGCTGAAACTgaagc-----tttgatttttttctaaggtAAGAGAGCTACAATATAGCAGAAAGAGCCCTCTAGGTCCATTTGTCTG--------ACCCCA--ATGACATATGATCTAAACCAGTCATT-TTGTGCATCTTTAGAATCATATTGTAAGGAAGACCTACTTACTTATCATCACTTTATAAGTGCGGAAAGTAGGGCCC-ATGAGG---tagcatttattttttactatttaataAGAGAACTGGGACTCTGTATGTTGATCTCT-TAATTCTCAGTTAAAATCTTATGCAGGACACCTTCTAGGCATCccaatagatttttaaagaaataatcctGTTAAAGTAACATTATCCAGATCATGTTAaggttttgtatttgtttactattttatACATAACCTGAC-AACAAGTAAGGATCTATCACTTAT--------GTAAGATACATAATTCTGAATTTCAAGGATGAAATAC--TTGCCTATACTTCACCTTGTAG-----CTTGTGTCCTG-GGATATCCCTAAACACTCTTTTCTGGCCTTATTACTTTACTCTTTCATTTCCAAAGATTT----TATGTG-----------AATTTTCTG---------TTGAGTAATTGGCCCTATTTATTCTCtgatttcctttt---------ccttaatATTAATTAACAGTATTTGTGTCCTGAAAGATTTAGCTGTGGTTTCTGAAAGTAGAGTATGTTGCTTG----ACTTCAGTTGTGTTTTGCTCCCACGAGG-CAGCAGCACAGTGCTGTGCAGACATTATGAGTTTGGCCTTAAGAGATACCTGA

a score=50136
s chr3           147720035 4012 + 160039680 [encoded data, 4301 characters]
s HiC_scaffold_1 134435798 3650 + 233722169 [encoded data, 4301 characters]

a score=23171
s chr3           147725483 656 + 160039680 AAAAGACATTTCATGTGAAAGAAAAGTCATCTTTCTACTTG-----------------TGGGACACTAGGAGAGAATCATCTCTCAACTCCATCCATTCTTCATTTCTATAGTTTTTGTGGCTTCTAGTGAAATT-------TCTTGgccactctgatttatctgcctgacaaaaagtacgacgaattccattcaa--------cttttatcatacagcatttaattaaagttactatctacagaactctgagcatctgggtatgggcaaccagcagtattaaAGTTAAATTCCTGGAACTAACCGGTTggtcttccttaaaactccaggtggctttgtccttaaatttgagaattaactttttctctcagctggaggcattaatcaaggctcagcaAGATGCATTAGACACCGCAAAACTCCATCTTGTTCCACTGGTGAAAATCTATAACAATTCTATCATCCAGTATGAAACTGAACGATGCACAGAAGCTGAATTGAA--------GAGCTTTGGGGATTAAGGCAGGAACAGCC-ATTTCCTGTATTATCAAA---AATCATCTATTTATATAGATAAATATGCAATCTGAGATCAT---AAATTAAAAACTGCACATCACTTCAGGAGGCTCTGCTGAGCAACCAAAGTTAGATCATTGTGGAGAAATCTTTGTAGTTACCCATTGCATATGGCATC
s HiC_scaffold_1 134444029 686 + 233722169 AAAATATAGTCTAGAGTAAAGCACAATCA-ctctctgcttgcaaggcataTTAAAAATTGAGACACTGGGGGAGAATTGTCTCTTAATAATATCTATCCTTCATTTCTACAATTTTT-TGATTTCCAGtgaaattcacattgttttgACCATACTGGTTTATCTGCCTGACAAGATGT--GACCTATTccactcaaattttttttttttaccatatttcatttaattaaagtTACTATCTTCAGAGCTCTGGGCAACTGGGTGAGGG-AACCAGTAGTATTAAACTTAAGTTCTTGAAACTATCCTGCTGGTATTCCTTAGAAAGCCAGGTAGCTTTATccttaaatgttttaattaattttcccTCTCAGCCTGAGCCATTACTCTAGATATAGTAAGATATATTAGTGACTACAAAACTCCAT--------ATAGGAGAAAATCTAGGAAGTTTCCACTCTGTAAACCAAATGTGAACACTCAGTTAAAACTGAAATGAATGCTTTTGAACCTTTTCAGCTAAGGTCAGGAACAACTGACTTCTCATCTTTTCTAGCTGGATGATATCATAACAGCAATAAATAT-CAAC---AGATCATTGCAAATTAAGAATTAGATCTACCCTGAGGAGGTTCTGCTGAGTAACTCAAGGTAGTCTATTTTGGGACAATCTTTGTAGTTACTGGCAGCACATGACATC

a score=36512
s chr3           147734248 2600 + 160039680 taagcattacctggggaaatttaaaa---atcacaccagactcgaagactgtgtacaggctttcacataattggtctggggtggagctcatgctgta-gagtatttttttcagatcctcaagtcattcca-tgttgcagccaagggtgaggtgcactgACC----TATATTACGGAATATGCCGCTGTG-AGGTTTGTTCTAACTCCTTGGTCTGGAAGACAATGTT--CACAGAGCTTTTAGTGTCCTGGAAGTATATGAACAATTAAATCACACAAAACAATTTTAGAATTTTATGAC-----CTTTGAAAATTGATTCAAAATGAAAGATGAGAATCAAAATGTGTCATTAATTTACTTCTGTACCCTTCCTTTGGTGGAAGTAAGGGTGGAGGTGAGGTGGTAAATCCAAAACACCTGGGTCATTTT--CCAAATTAAAATAACCA-----------GGAGAGTCTAATATTTGCAAAGGCCTATGAGTGCAGGAGGGAAACACATGTAACTG--GAAATTTCTCTGGATCACTCTGATCCCCACTTCCTTTGTCACAG-------------------AAAGCCATTAACTTCCTTCTTGTGAGTCTAACTTCTCTGAGGTGTTAGGTAGAGGTCACAGCTATCAGTGGTCAGCCATACGTTCTCATTCAC--ACTATGTGATCATGTTCAACATTAGAGAACCTCAAAATGAGAGTCTGAGACAAACAGGATGTGGCTGCTTGGGACCAATATCACAGATTAGAGCAATGTGCACTCCGGGGTAAAGATTACTACTCTACTCTGCTAATAATACTCCACTCTAAAAGCAATAAGAGTGACAGACATAGTCTAGAAATAACAGAAAACTTATTTTTACACTTGAAAAACATTTTTTTTCAAAAATTACTCAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTAcgggtgtccctgtgcatgagtcaaggtcagagaacaactttggggactcagttccttccttccacTTCAGTCTTGTGTGGCAAGTGTCAGTATATACAGAGCTATTGCATCAGCCCAGAGATAAAAATCCATACATTACAAGTGAACAGCATGTTAGTAAATTTATATTACCTGATTCCAGTATGTACATTGCCCAGCAGCGTGTATGATTAATACACGTAAAGCACACGCAAGAAATG-----AGTTTTAGAGTTAAAAG------CAACATCACTCC------AATCC-CTGCGTGTGAGGTTTACATAGACAGAGAAGAGGGGCTCCCTGGAGTCTTCAACcctggttacacaaagtgtggtcc-aggaacagcagctccctgtcacctggggattatcaaggcagggaatctcctctgcaatgccaacttaatcattattaac------aaca-ccccaagtgatttgtaagca-catgaa-aTGTATGCAGTATAGATTTAGTCC-CTGTTTTAATGACAAT-----AAGTTAATCCTCTGATGTTTGCAGAACTAT-TCTGTGCATTTTGTAAA-----ATTATACGAAAATCCGTTTTAACAGAATA---------GAAAATAAAGGCTTTACAAATTTTAAATTCTTACTTTACACCACACACAAAAAAAACTTACTATTGTAACAGAGTGAAATTTTCATCCTTCTTTTCAAGTAGAGTACGTTTCACCAAGGGAACAGATGAGCTGTCAGTTGCtggtgatggtggtgatggttgtagtggtggtAATAAATGGCATTCCCTGTTTCATTAGTCTTTCTAGCTCATTTTTCTAGCTTAATTTCAGAAAGTGAACATTACTGCCCATAATTTGCTAACAAGTAAAAGTGAAGAATTGCAAACTGCTCTTAAGGGTTAAAGGCAAAACCAGCCAACCaacaaaaacaaaacaaaacaaaacaaacaaaaacaaaaacaaaaaacaaaaaacaaaaacaaaGTACAACCATACCCTCTACTTGTTCTTTTTTACTCTTAAATTAATACTTGAGGATGAGGCTCAGATGT-GAGCCT-----CATCAAGAGGGAAAGGGAGGGA------------GGTCCCAACTTAAGTTATGTCATCTGAAATAAAGAGATGGACTTTGGTTGTAAAGCATGATAATAACATTCAAGTCATTC-----ATTTTTTGGAGAGCACCCTTAGCTTACACACAATGACAGCAATAACAGAAAGG----GCGGTGCCAGCAGAAGTTCCTCACAAGCCCCACTTCCACAACAGAACTTGCCTTCTCAAGCTTTCTCACATTCAGTGTTGTCTCCAGCATGACCTT-----GGCAATGCACTGAAACCTCCACATGAGCACAAATTCATGCT--TTTTCTCACCTATTTAAATGATGAGCATCCCCAGGGGG--AGAACGGTACCCTCTGTGTGAAGGATCCATACTGATGATATTTATTTTGAACTGAAGCCATTCTATCATGTTCATGACATTT-TACAAGCAAGAAGCCCAGAACATACCCCCCTTTCTTTTTTGGAACGTGTAAAACATAAAACTTTAACATTTCCAATGTATGTAATTTGGGTCTGGGTGGATAATTATATCACCG------------TCTGAACGTAGCATTTAGGACATGC-TTTGAGTAAATCCTTGGAGAGCTATGCCAATATATATGGACTCTATGTGATACAAAGGGCCAAGTCCTAATAAAGACCATGCCTTATAAAGAATGCAGTGTGGGTTTGCCTGA
s HiC_scaffold_1 134448008 2330 + 233722169 TAAGAACTACCTGGAGAGTTTTAAAAGTAATGACGCCAGACTTCA----TACCTAGAGATTTTGATTTAATTGGTCTGGGTTGCAATTC---CTGTATGGGTGTCTTTTAAAATTCCCCAAGTTATTCCAAGGTTACAACCAGGGTTGAGAACCACCGGCCGGCCTATGCAATGGAATGCACTGCGGTATAATTTTGCGTTAGCTCCTTGGTCTGTGACACCATTTTAACACAGAACCTAGAACATTATTTAAGCCTTTAAAAAGCATAAGTacacaaaacaatttaagaattTTATGGCTTTGACTTTAAAA-----TTCAGATTGAAAGGTGAGATTTAAAAGATGTCATTAATCTATTTGAACAGTTCTTAATTGGGGGAGG-GATGGTGAATGTGA-----CAAATCAGAACCATCTGGGTCATTTTTTCCAAAGTAAAATAACCATGTTCTCACCAGGAGATTCCAATATTTGGAAAGGCATGTGaatagggaaaggaaaaatgtataatttttaaaagttc---agatgATTCTTACCTCCCCATCCCTGGCTACAACTACTCCAGCTTCTATAGAAAAACCACCGCTTTACTTATTTTGCTTGTAACTTGCCAAAGAAGTTAGGTAGATGTTACAGTGATCAGTGGTTAGCCACAAGTCTTTACCCTCCTGTTATGTGATCAGGATAATCATACTGAAGCTTCAAAATACAAGACTTAGAAAAA--GAACACTATTGGTTGGGAAAGACActgcaaattaaagcaattt---------------------------------------------------------------------aGACACAG-----AAATAACCAAACgctttctt----actttaaaaaatgattctagGAACAGTTAAACATATGT----------------------------------------------------------------------------------------TTTCTCCTT------------------GGAAATATAAGAATATAT--------------------------------CATATA----AACTAGTTATaatattaataagtgaaaaatgtCATGTTTTGGCATCCAGatttcataataaatttttgGAATAACccaaataaagcacaa--aataattGTTACtacttttaaacttaaaaaatgtttcaaaatttcttttctataaatataCTACATG-GTGTTTGGCATAGGGAGGTAAGTGGGT-------GATTTTCTGTCTCT---------CAGTGTGGTCTGAGGGAAAGTAGGATCCCATCACCT--------CTGAAACACAGAATCCACTCC---ATACCAGCTTAATCAGTATCGACTTTTAAAATATCCCCAAGTGATGTGTACGCAACATGAACATTTTAGAAGTTCTGCTTTAGGCTACTGTTTATAAGACAGTCACCTAAACTACTGCCCAGAAATGAGCAAGAATGTCTCCAAATATCTTTAAAACCAACATCATATAA----CTCatgtaacaaaatattataaaaggatagcaaaaactttaaaaatcttaa-tcCTTACCTATCACCATTGA-ACAGCATCCTTACAAA---AACactctggaattttcctttttatctttgaacACAGC-CGATAGATGATAGCCAGAACTGAGCT------TGCTGCTCGTACTGGTAATGGTGGTgttg--------------catgttttgttt--ttattctttttctctcagttttccatttctatttcaaaaagtgAACACAACAGGCTGTAATTTGCCAACAAGCAGAAGTG--------CAAACTGCTCTTTGGGG-----------------------------------------------------------------------GAAGAATGAATGGATCATTACCATAGTCTC-GCCTGCTTTTTTATG---TCAAATCAATGCTATGTAATG----TTAGTTGTCTAGTTTTGAAACAACGAGATGCAAGGGGAAGAACAGGACAGACAGGGCACAGacttaaactatgtcttcttaaATAAA----TGACATTTCATTTTTCACAGTTATAACAAAAATCAAGTTATTCCAAGTGATTTCCAAAATACGGCCACTGCTTACATAGTAATATTatgatgataaaaatgtttaGAAGTCTTAGCC----TTTTTCACTAGTGGAGCTT----AACATTA--TACCATCT-GAGCTTCTCTATTTTTAATACCATCTTCCATATCCCCTTCAGTCAGTATGATATTTGGACCTCCATGTGAGTATTATTCCATATTATTTTTCTCACCCAGTTAAGTTATGAATATCATCATGAGGGTAAAACTCCAAGCTTTAGGTTAAG-----ATGGGCACAGTAACTATTTTGAACTGAAACCATGATATCATGTGTATAGCATTTGCACAAGCAAGCAGCCAGAAGGGTTTTCCCTTTTCAT------AATGTGTGAAACACAGAGCTTTGCGTTTTCTAATTTATATAATTTGACTCTGGATGGGTAATTATATCACTAATAAACACCAGCTCTGAAAGTAATGTGGAGAGTATGCATTTCATAAAAACCTTGGAGAGTTGTGCCA--ATACGTGGACCATGTATGATGTAAAGGACCAATCCCTAATAAAGACCATGCCTTAGGA--GATGCAGCGCAGATTTGCCTGA

a score=33470
s chr3           147742368 1543 + 160039680 TTATTTTTACGCTTTATCTAATTGAAGAAGACTGCCTAATCCTCAAGTAAGTGGTTAGACTACCACTACTCAAA----------TTGAGATTTACATGATTAAAC---------------ATGAaaaacaaaaca------aaacaaaacaaa------acaaaacaaaCCCAGCCCTCTTCAAA----------AGGTAAAGAGTCCATGAACTATCATTTTCACCTAAAAGCCATGAAGTAACATTGGAAGAAAGAGACTGGAGACAAAGTCAAAGATATTTCAGCAGACTTTTGTTTTTACTTAAGTAGC-------ACTATTTAGCTAGATTTTTACATGTGAAAAGAATGATGTTTGCCTAAGAAATGATCAAAAGGAAAAGGAACAGGTGTTAGGA-CATCTGGTCAACCTGAAGACTTAGATGATTCTGAGCCCTTGGTTATGGATGAGCTTCAATAAGCTAGGG-----------CTGCTTGAGTTGGGTTGACCACTATTA---TCTTACAGAGTCCATG--CTTCCTCTCCAAAGTTCCAAACTGGAGAAATGTAAAGAACTTTAAAAGTAAAAACCC----ATTGTTGAAA-AAAAAATCAAAAATGAGCTATATACTCCAGTAAACTCCTACT---CTCGTGATTATGGTTAGGTAATCATTATTATTGGAGGTAATCAAAGATTAATATTCCCGTCAAAGAAAATGGAGGCAGAAAGAACATGTTGACATCAATCCTGTATATAAATCAACAGGAGTTCAACAGTCCTAAAAAGCAATTTAAA-TAAAATACCATCTCGGCTCCTGATTTACATTATGTAGGTAGTGCAACTAAATGTGTCATTTCCCTCATTGCAAACGCAACTCTACACTGGTTCATTGAGACATTTTCTCCCTTCTAAGAAAAAAAAAATCCCTACTCAAAAATAAATTACCACTTTGGATTACAATACCTT--------------------ATTTTTGATCCTTTACTTTAGAAGGAATGTAATATTTTCCATTATTCTTCAAACCTGATAGACAGTTAAATTTGTATTTATTACACTGCATGTAATCATTAATATAAGCCGTAGCAACCAAGCACCTTGATTTCAACTATCAACAATCACCTGAAATACTGTAGAAGGGAATAATAGAAAAAAGGATTCTCTTTGTCGCCCTTTT----AAAATTAAAGAGCATTGAATGCTCATACTCTGAATCTCCTCATCTGAGAACACAGAAGATAATTAGAAGAGGATTGCCAAAGTCCT--GTTTGTGTTTAATTTCCTCACTTGGGACAAAAGTCAATGGCGATTATAGCAGGTTAGCTGGAAGTGTGGATTTTTGACTGAGAAAACTAAGGTTGTATCTTTGAATTGGTGTCTGAGTTACTGACTAATGTTACACAATCTTTAACTCATCCCAACTTTGGGATAAGTTAACCCCTTCCTCTAATATTGAGTCACTGACATTA-------------CTCCTCAGTAATGATTCTAG------ACCCCAAAAGATAATTTTGTT-TTGTGTGATTATATTGAGGCT-----------------GAAACTG-AATATCCTTT---TAATACTGTTTTCACCAAGGGGCCCTAACATTTGTCATCATTTTACTGCACT-TTAGAAAATGGCCAAGGATCTGCTGCTTGA
s HiC_scaffold_1 134457423 1572 + 233722169 TCATTTGTATATTTGATCTAATTGGTAAAAGTTTTCTGATATACAAGTTAATATTTGGATCACAAAAGCCTAAAAAAATCAAACTTGGAATTTGCATGAGGAAACTAAAATATTGATTGCATAAAGGTCATATCATCTTTCAAAGAAGATAAGCTGTATATGAAATGAGC---------TTCAAGTATACGGACCAGGTTTTTAATATATGAATGAGGCTTCTCA-----GAAGCACTAACCAGCTTTGGCAAGAACGGACTGTAGTTAAATTCAAA--TCTGTGATTAGTTCATCTTTTTTACTTAAGCAGTTACCAAAACTATT--ATTAG-TTTTTACAAATGAAAGGACT----TTCCTCTGAGGCATTGT------GAGAGAAACTAGATTTTAGGAACAACTTTTCAACCTGAAGTCC------ACCTTTTGGACCTGGACATG-AGAAACAGCCATGAGGAAAGGTAAGATGGTCTCTGTTAGGATATTGTTGACCATTACCAAAATCTAATGGATTCCATAGACATAAACTTCACAGTCCTA-------------TCAAgcatttttagaataaaagcttgaATATTAGTGAAATGGAAAATCAATAATTAGCTGCACACTCTACAAAACTACTACTGCTCCCATGATTATGG---------------------AGGTAATCAAAGATTAATATTCCCCTCACAGAAAATGGAAGTTAAGAGCACACATTGGTATAAATCCTTTGTATAAACCAATAGGAGTT--ACAGTcctaaaaagtaatttaaagtaaaatac-agCTCAGCTCTTGATTTACATTATATAGGCTGCATAACTGTA-----AAGTTCTCTTATTACAAATGTAACTCTACCCTGGTTCCTTGGACCATTTCCCTGCTTCTAAGTCTAAa----tctcttcttaaaaataaattaaaattttggtttGCAATATGTTTGGACTATATTTGGCTtggtattttaaatcttttactttagaaacaataaaatat----catTGCTCCTCAAACACGACAGACAGCTAAATTTGTGTTTATTATACTTCATTTAATCATCAATATAAACTGCAGTAGCCAAGAGCCTCAGTTTGGATTATTGGCAATTACTTGAAGTATTGTAG-ATAACATAAGGGAAATAAAGATTTTCCTTGGtgacccttttaaaaaaatcaaaggacc---AGTGCTCAGTTTGAGACTTACCACTTCAAAAGACAACATAGACAATTACAATAAAATTACTAAAGTGCTgggcttttattttatcttatcttttGGAATAAAATTCGATGGCTATCATTGTACAGTggttagaaatataaattt----ccaTGAAAGAGACAGTTGAATTTCTGACCC----TCTTACTTCCTAATTGATGTTACACAAGCCTTAAct--tctcagttt--------------cctttccccaaaaattaaaaaaaaaatattatggtaGCACTTACCTCATCAG-AATGTTTTAAGTACAGTTCTGAAAAACATAGTAATATTAATGTGTTAGCAT-TTGAGCCTAGAATAtagcacatttaaaaattgtaatattgTTTGGATAATATTATTTTAAGCAA-GGTTTCtaaaatcagtaat--tttttttgtattcttgggaAATGGCTATGGTGCTTAAGCTTGA

a score=120378
s chr3           147745263 5894 + 160039680 [encoded data, 6522 characters]
s HiC_scaffold_1 134462108 5959 + 233722169 [encoded data, 6522 characters]

a score=38657
s chr3           147753319 2991 + 160039680 TTACACTTAATGAAGTTTGGGTTTGATTCAATCCATGCACTC--TGTCTTTTCACCATACATCCTTTTCTGGCAGTCAGCTCTTCAGGTCTGGTCTACTAACTGAGT---GATCAGAGAGGGTTTTCTCTGTCTGATCAGGGCCTGTGCTATGTGATG-CACTTCTGAACCTGCTGTCACACCCTTCTGAAAACAGACTGGTGAGATGGATGGATCACC--------------------AGTGGGTGGGTGG--------CTCTCTAGGAGACTGACTGAAACTGAAGAACTTTGT-GCCACTTGTCAGTATG-----CCTTGAAGGTCACGTAGAATAACATCTACCACCAGAGCTGAGCTCTTGACCTTTAGTATGAGTTTC-TTGGAAGGGTTGTATAAAAACTTATAAAAAATTTATAGAGTCCTTCTCATAGGGAAAAAAAATACTAAAATTCCCACTAAATTCCCTTCCTTGTTGCATCTTCTCTACCccatccatcctccatcctccatcctccatcttccattctccattctccattctccactctcatcctccatcctgcatcATTAT----------TCATTGTATAATC----------CCATTCCATGAGCTACTATTTCCATTCTGTCACCAAAGA--CAATGCCACTCCAAGCAAGAT------TTCAATGTTCCCA----CAGTTATTTATCATGACAAACAGGCAGTGACCAGAGCAGCCATTCATTTGTGAATTTAAGTATTTCT----------------------------------------------------------------------------TATTTTTGCCAGGAATCATGTTTTAAGAATTTGAGTGAATATATGGAACAAATATTTTTCATTTATTATTCTGCTACAATTAAGCACATTATATTTTCATATAGATTTTATATGAGTTATATAAAGGAAGTTTTATGTATAAAAATACTTGTTTTATTTGA----TACTCTTTTTTC------CTTTCACTTTTGTTTCTGTTTGAATCAAATTACACACGA--AGGATTCAATCCCTTTTTTCCTAGCCTGTCATAGTAATAATTCTGTTAT--ATAGAATTTTTACAACAGTTAGAAATAGAAAATG-TTAGTT-CCTATATTTAAAATCTGTTTAGTTCTATTCCTGTGTAACTCAACTGAAAAAT-TTTCTGTGATCATAGCCAAAGAATTTTTAATATATTGTAGATGGAAACTCAGAAGCGGGGCTATGCTGTGTGTTCATTAATGATGAAA--TTTGAAATAGTTTAGGAACTGAGTCATATCCATCCCTTTGGGAATT-TCTAAGGTCTCCTGAACAAAAA----------------TGTCCTACCATTTCCATGACTCTGTA-----GAAG----------------------AGCAGGAACTGAAG--------------------------------------GTCTATTTATCAAC------------------AGAATACCTGCAAAGCTTCATAGTGGATGCTGTATCATTGCCACCGGACTTAACTGCTTCAGTTATCAGTCTCTTGATCCCTCT----ACATCTAACAA-CAGGGTTGCCTGAGAAAT------GGCAGCTGCCCTC-----------------------------TAGTTGCAAGGTCTGAGTATTGTAA-------CTGGGACCTCAAGGTTGG-------------CCAAAGAAAGGAA-----------------------------------------------CAACTAT-----------------------------------------------AAAGAGACATGGATATTTTATCGTAGTCATGCACGAGTGAAC-----AAGTGTTAAAACTAGAGAATGAACACAAGTTTGAAAAATGTAATGATGGGTATAGAGACGATGAATTGAAAAGATGATGGAAAAGATTAAAACTTCAAGAGCATCACACTTTTATGCTGAGTCTATAATGGACAGAGGATAGCTATTGGCACTAGTAGCAATATTGTTAACAACTGAAGGGATGCTAGGGAAAGAACGTGTATCAGGAACAGCTTGTAAAAGAAAAA--ACTTCCAGAGGCTTCTCAGGAAGCAAAGGGACGGCATG-TGGTGAACACAGCGTTCGGATAACT--TGAG---AAAGTGAAAGAACA-ATAGTAACAAGCCATGCCACCACAATGAAAAACGCTGCTAACAGATGGAATTGGAATAACCAACCCTTGTTTTGCTGCAGATATTTCCGACTTTATGTCAGGCAAATTCTGACATGGAGTGACCTTCAGCTTACATAGCTCATCTACCAGGCTCTTCCTGAAAGTGGAGATGGAATGACTCAATTCC-AGTGAGGATATACTTTTATTTCTAAGTACCTTG--TTGCATGCCTTTAAAATAATCTATTTTTTTCCTTGCAAATTATCTATTTTCAGAGTTTTCTTTATATGTCAATTCCAGTGAGGAGATACTTTTATTTCTAAGT---ACCCTGT----TGCATGCATTTAAAAT-AATCTATTTCTTTCCT-TGCAAATTATCTGTTTTCAGAGTTTT-CTTTATATGTTCTATATA-AAATTCTAAAATTATTTTGTTAAAATGCTTCCCCAGACCAAGACAT--ATGTCAAGATTCTAATGGAAAT---TTGGTGTTTACCTTT----------GCAGATACCTTTATCTTCTCTTGCATTTGTTTTTTTTATTTATAATATGTGGAAATATAG-TATGTACTGCATAATATTAGGCAAGAAAAATGTATGCTCAGAGTTCTGTATGTGACTGAAACAGAGGCAAGAACTTCGTAAGTCCTTAGTCATGGTGATACAGTTCATACAGATTCTTAACATCACATCTGGGCTTTTTTGACCAGAAAGACCCAAATGCAAC-ATGTAAGCATGTGTTTCTTGTTTTACTTCATTCTAAGGCCTGGTGAGTGTGCACT-TGAGAAGTGAAGGCTGGGAGCGAGTCTGCTTTGGCGCACTCACCTTTTACAGAAAGTTTAATATTTAGTTACAGGTGACACTTGGTGATTTATGATCACTATTACCGAAAAATGATACTCAATTA-GTCCAAGTCAGAGAATCTGGACAACGGAAAAATA----------AAATTAAGT-AAAGAAGGAGCACAGACAGCAAAAGAAGGT---GAAAGGGAAGAAGGAAGAGAGGGA--GATATAAG----------GTTTCAGGTTATGAGAAGAATTTGACAAAGAACAATGGATTAGCCATATATTGGAAGCTGATGATTGGTTTTGGCTAACTTAATATGATTACCATGCTGTTGAGAAACAATAGCTATGTAGAACTGACAGTACTCTTAGTCATTTTGGCTTGCCACTTAACTTTCTTAACAGTT------AACTCTCCTGC-TTCTGAGTTCCTCC
s HiC_scaffold_1 134470123 3277 + 233722169 TTACCTTTAA--AACGTTGGGTAGGATTTAATCTATTCACCCCATGTGTGTGTACAATTCATGCGCTTCTGAAAGTCCTATAACTAGGTTAGCTTCCCCTGCTAGGATGAGGTCAGTCAGGCTTCTCTCAGCCTGA---------GTGCAAAG-GATGTCACTTC------------CATTCCGTGCAAAGAAGTGGCTGGTGTGATGAATG---cactggggtggggggtgggatgGGAGTGGGAGTGTGGAGGATGCATCTTGCAGAAACCTAAATAAAATTGAGCTACTCTGCAGTCAATT-TCAGAGTGGTGTTTTTTCAAAACTACCTAGACTAAGTTCCAAACTCCTTGCAGAATACTCAACTTTTATTATGAGTTTCCTTGGAAGTGTTGTGTAAAAATTTGTAAGAGATTTACGGAGTTCTTGCCATAG----AAAAGCTTCTAAAACTCCcactaaaatctttttctt--------------------------------cctcca-----ctGCTCCCACTCTTTGTACCTCCTTGTCCTCACAGTCACTCAGCTCTGGAGAATTACAGCTGCTGGCTCAGTGCCCAGGCTTAGGTCCGGCCCCTCCATGAGCC----TCTCCAAGCCATCCTTTGAGGAGCAAGGTGTCCCTAAGCGGTGCagtcccctccccctccccaagtCCATCTATTCATATT----------------------CATCTATTCgtttatgaatttaaatatttctctctctgtctctctgtctctgtctctgtctctgtctctctctctctctctctctgctctctctctctctctctctctctctcggctaGGAGTACTCCTT--AGGATTTGCATTCATACATGGAACT------------------TTCTGGTTTACTCAGGTACACATCTGTTACACACAGAATTTATGT-AGCAATCGGAAGGAG--TTTATTTTTAGCCTT--TTGGCTTATCTGGGGggcacttaaattttaaaatgctcttaTTTTTTAAGTTGTTCGAGTCAAATTATGCAAGATTCTGATTCCATCCTATTTTTCTT-GCCCATCGTAAAAAGGATTTTGTCATTAATAAGCTTGTGATAGCATCTAGAAATAGAAAAGGCTTAGTTTCctatatttgtgttttgtttagttcttctcctctgaaatttaattgaaaaaaattgcagtttacaaaatcaaatcaagtATAATAGGTTACAGATGAAGATTAAGAAGCAAGATTATGTAGGGTGCTCATTATtggtgaaacattttaaatagtttagGAATTGAGTAATCTCG---TCTCTGGGAAGTATTGGAGAGCTGATgaaagaaaaggacaatatgtgaCTTTGATATGGCACCTTAGTGGCCCTGTGCTGacaaaggtctttttttttttttttaactaacagcaacaaaaatcacactgatatctatctatctatctatctatctatctatctatctatctacctacctacctatctatcaGGTATACATGTGTAA-TACACATGGGAGGGTCTCTCATCCCAAGGCTATTTCACACCTTGAGTTCTCAGGCTATGTACACCCCTGGGAACCTCCCATAAGCACAGCTGGGTAACAAGCACTATGGACAGATAGCCTCCTTAACTTTGGTGGAGCTAATTCTATGGGTCATCATAAGCACTTAGCACAGAAAAGAGGAGCTGAGACCATCAGGCAAGTATAAGCAAAATCCCAAAGCAGGCAATTTTTTCCTGTCCTTAAAGTTTGCACCAAACTGAGCTCCACTTGCTGCAACTGTCTATCATGGCTAAATTCTCTCGAAGACTCTAAAAAGTGCATATGAAGGAAAAGACATGCATGTTTAGC-----TCATGAAAAGATGAGCTGTGCCAGaacaaaaattagagaaaagaagataaattgaAAGTTGTAGCTATGAGTGTAGAAAAGGTAAATTGGCAAGAAGCTGGAAGA-----AACATCCAAAAAAGTCACAACATGTTACAAAGTCTGTGATGACTAGTGGATAA--AATGTCACCACCATCAATCCAGTAAACATCCTCATGAATGTTATGAAAAGACCCTATGGCAGCAACAGCTTGGGGAAGAAAAATAGAATCCTGAAGCTACTCATGAAGACAGGAGATAATATGATGGTGGACAAAGTTT---GACAGCTACTGAGGTAAAGGCGATCAGACATAAAATACTAAGT--TTCCActggaatgaaaaatatttctgacaaATAGGCTTTGAATAACAAAGTGCAGTTCT-TTGCAGAAAATGTTAAACTCACTTTAAGCAAACCCC--CAGTGAGTGATAACCAGTTCTCACAGCC-----ATGGGGCTCTTTTTGATTTGGTAGATGAaataatgcaactgagactatgGAATTGTTCTCATTCATGAGGCCCTTAAACTATAcaattgtgtatttatttgtttattttggtaccagggatcaaact-cagggcctt------atgct--tgccaggcaggtg----ctttgtacctgagctaaatcctaggctatgcatatatttagttttaatctatttctttccCCTGAACAAtatctttgtttagtttttttctaaatatgg---atatatgaattttgaaatttagCTGTTAACATACGTCTCCAAATCAAATCATTTATATCAAGATCCTAATGGAAACAGAGTAGTATGTGACTTCAGCAATGATAGCAAATA----TAACTTCTCTGGGATTCATCCTT---ATTTGTAAAAAGTGGAAACACATCTTTTTGCCCCATAGAATTGAAAGAGAAA---GTCCATGCAAAGATCTGAGT-TCAGGGAAATA----------------------TTAGTGATGGCAGTCAAACTTCCCAGGATTCTTATCATCAAA------ATTACTTAACCAGAAAGACCAAA--GCAGCCAGGTAaacatgtgtttcttgttttccttcacTGCAAGACCTGTTGAGTGTAAAGTATGGGAAATGAAGGCCATGGACAAATGTGAATTGGCATAGTTGCCTTTTGTAGAACGTGTGATATGTAGTAAAAGGTAAGATTTAGTGATTTCTGATCACCATTACC---------CTCCCAATTATattcaagtcacagaatttaggaaaaggaaaaaaataaaagcaacaaataGAGTCAGAGAAGAATTAAGTGAGAGAAAACAAggtaaagaaaaggaagaaggaaaagagtgAATGATAGAGGATAGTGGTATGTTTTGGATCACTGAAAAAATTTGAGAAAGTATAACTAGTTATCCAGATATTGGAACTCAAATATTAGGTTTATCTTACATAATAGAACTGCCATGTGCTTGAGAAACCAGGGCTATATGAGGTCTACAATATTATTAATTGTTTTTATGTGACAATTTACTTTCTTGATAATTCTAACAGGCTCTTCTGCTTTCTAAGCTCCCTC

a score=18412
s chr3           147757727 893 + 160039680 TACACTTCATAGTATAAAATAG--CTTTAATTGTAGAATACAATATTATCTATCACTACACTAAAGAAACAAATAATGAC---------AGTCCAATACCTTATTTCTGCATAATCCATTATAAGACCTCAACTCCAGGGAAGAATATAATACAAATATAATACTCAGGCCTAAAACAAAGTACCCTTGATTTGTCAACTCTGATGCTGAAGGTGTAGAGAGGA-GAGGTGTGGAGATTCTTTGTAGATGCTGAAGGACTCTGTCACTTGGCAGGTAGATGGTTTAAATTCACTTTGCCTGAAAAGTGCATGGTTCCTGGTAGAAATTTTAAGTTGAAATGGCTTCATGCTGATACTCCTCTTT-GTTACTGGTAGGAACAAATATGAACATTGCTTAGATGAAAGAGAAATGAGAGTTCAGTCTAGGACAGATGTGG--TGATGTACATCAAATGTGAGGGGCATCCTGATCTGAAAATTTTTGCAGATGTGAACAATATGTCTGAGGAAATCAAACAGATTGTGTGAAATTCTGCTTGGTCATTCAGAGTGGTCTTCATATATGCTTAGTCCTGCAAAGCTCTTGTGGAAAAT-TTTCAACTTTATTGGACTTGATTTTGGGGGAtttttttttgtct---tttttttttttttGTCATTTTGTAGCTTTGTCTT-AGTAAAGCTTTTCTTTTGGCTTATATTCCATTTCACACTGATATTTGTCATTGACTTTACAGTAATTTTCTTCAGATTTATTTTTTTATTGATTAATGAATTCTTAAGCACTTAGAAAACCTTATTAAGTTCTGATACGCTCTTTGAACTGATGAGTCAGACCTTCATGGGG-CAAGTTTTGTATGCTTGGAGTTTGGAGGTCTTCCTAAGGAATGTCATACTTCAGTAAATGTCA
s HiC_scaffold_1 134474277 879 + 233722169 TACACTGCATCACATGTGATATGCcctgtgttttaatattcaatatt-tttagtgTTCTAATAAAGATGGAAAGAGTGGATTGATGGGGACTCTAATAGCTTATTCTTGCTTAAGTCACCCTAAATCTTCaa-tccagaaataaacaaaaattaaagtcaATAATCAGATTGA-------------TTAAGCATTCAACATTGACAACGA--GTGGAGGAAGGAAGAGTtatctgaaatctctgaaatttcTAAATAA-TATGCCAATTTGCACACATGCAGTCCAGGTTCACAGTGCTAGGATGACTCAATATTCTCAGTGGAAAACTTGACTTGAAAagatgtcatcttcagagtgccCTCAAGATACTGGCATTGACAGC----AAAGCTTCCTGGAAGAAGGAGAAACAAGAATTCAGTCCGGGACAGTAGAGGGTTAACATGCATCGTATGCAAGGGACATCCTAGTTT-CAGATATATGCAGATGCAAACAAAGTGCCTGAGGAAATCAAACCACTTGGGTGAGATTCTGTTTGGTCAAGCACAGTGGTCTTTGTACGTGCTTAGTATTTCAAAGACCATGTGAAccttatttttagtttgttgGACTTAATTTGGAGAGATATCTATTTTTCTAGAAGTTCTGATTTTGGTCATCTTATAATTTTGTCCTAAGTAAGGCAAAGTCATCTGTTTCTATTGTAGCTTACTCTGTTTTCTATCTCTGGTTTTATGGTACTTTCCTAAGGACCTCCTTTTGCATTAAATCATGCATTCAAGAATACTTGCTGCCAATTATC--TTTCTGGCACTCATTATTAA----------AGAATTTCACAAGGTTTGGTTTTGTCTTCCTGGAATACAAAGACTTACCCAGGGAATTTAAGACCTTAGTAAATGTCA

a score=123023
s chr3           147760925 5817 + 160039680 [encoded data, 6293 characters]
s HiC_scaffold_1 134479670 5734 + 233722169 [encoded data, 6293 characters]

a score=92393
s chr3           147772417 3439 + 160039680 ttgtacaCAAC-AAAAGAGCTTCCCTATGTGAGTGGAGAGAGGCTTGATTTTCAAAATAGAAGGATGAAGAATATTCTAGAACTTACTTATCTTTTCTCCCGAC--TTAAAAAGCACACAGAGGATACCACCTCC-TGACATGTGGCTTTCTTCAGTTCCCATC-TTAAAGAACTGAATACTTTATCTTACATCCCATCCCCTGGATTTGATGACAGTGACATCCACAAGATATCTTATATCTCATCCTTGTGATTTGACAACAGTGATATCCACAGACatcctatactactggccagaagtaaatgaacta-tgggatacactctccagac-aaaactggaccaatcaaattcgttctttcccaggcatttgtaacaggggctaagaggctgtcaatcattttctttcctcagta-tgaagaggtgaa-aaagttggactgcagagagaaaaagtgaaacccatctgctcggggaac---agatatgagatgaagactttgagagccctggatcccccaaggctttgtgcttcctgcttgcctcatttctttcctctttgcttgctttggctcaatttgatttctgttattaaatgtaacccaaagaaccttaactaaTTCAGAAGGGAAACCGAATATTAAAAGAGGCAAAGTGGGAGAAAGACTTCTAAATCAACCTGCTGCTAAGCAGAAATGAAGCAGGAAAACGGAAGGCCCC-AGAGATCCAGTGCAGCCCTCCTGTCCCACTTCCCACCTGCCCCAGTTC--AAGAAGAGTCAGCACTGCAGCCTTCA-ATCACTCCTGGCAGGAATGAATTGCAGGAGTGTCTTCCATGGAGCATATCCAAGATCTCTGTCCAGCAACATAGTTCAG--TGAACTCTGTGC--------------------ACAATTTACAGTGTTCTACCAGTACTCGGCATCCACCCTCCATGCACGTCTGCAGGTGG--GAATGCCCTAGGACCTATGAAGTTTTAAACCAGTGATGCTTAGAATATAATGCATGCAGATTGTAGATTGTCtttttttctttttctttctttctttttttttttttttttttttGGAATTCGTCCATAAGTCTTCAATCACCTGTGAGGTAA-TTTTTTCCCATATGTTTCTCATTCATTTATGTTTAAGATGGAGATGATTGGCTCTGGGCTCCATT-GATGAGGGACTAGTTAGTGAGGCTTCTCATTGTTCTCTTGTTTTCCTGGCTCTGCGGAGAT-CGTATCACCCAGATGATGTTCCAGGAAGAAAACGCAGAATCATTTATGGTGGTGTCTAAAGTCATCACTTCATAAAAGTAGATTTT-----TTTCTTTCCCCTCCCAGAAAAGGGAAATACCAGCAAAGTTATTTGGAAAAAAA--AAAGTCTGTCCTATCACTATAAATTGGAAATATGTTATTTTATTTTTGCATTCAGTTGCGGAAAAGGCAAGT-TTCTAACTTTAGGACAGAGATCCATTGTTTAATTTTTGGAAATCTATATGCATGTACATGTGATAC-----ATCTGTTGATTGCTCATTCTGAGATCCATGGAAATACAATACAAATCTTTCAGACTAATTCTGGCACCTCTAAGTATATACTATGGG--GGAAAAGAACAGTGATTTGATTTTTTTTTTGAAATATGAAAAACATTGGAAAATTCATTTCATATGCTCATGTTTATGCGCCCTTGAATACTTGATAAACAGGTGTTTCAATTTCCTT---AACATTGGGATACACAACACGTTAATGTCCAAAACAGAAAT-CAAAGTAATCAGGAA-------------TGTGGAAT--CTGAGCCCTCCATTCCAGTCGTGAGATGTCCACATCCCGATCTTGCTGGAGTGCAGAGTCTCC--CTTACAGGCTATGAAGCTGTGTCTTTCTACCGGAACCCAGAAC----------TTTGATGAATCAACCCAATATTAATAAATGACAACCCTTTAACATGTTGTAAAGAAAGGTGTAGTATG--ATTTCTTTTCATTCCCTTTGATTGGAATTGTACACAGAGATTTTGCCTTCATTGAAAGTTAAAA--GATGTTG----GAAAAACTATTTTCAACACTTAAGGAAAAATATATACATTCCCAAGCCTTCACAGAAACTGTCTCACTTGGGTTTTTAGAATAACAAAAGACATGTTTTTGCCTCATTTGCCTGTGAAAATATGCCTTTTTAAGAGCATAAAAAGACCTATGTTATTTGAAGAACAACTTGATAAATATTTCATTTTTTATGAAACCGTGGAAAA---ATTTATTCCACTCTTTCAAATACTAAAG-TTTGTTTAAATCTATAGAA---CTATGTTCAACTGACACTATCATCATATGCTG--TGTCTCCTATTTAGattaaaatatgttttttaatatttttaaGACACTATCATCATATACAATCTCCAATGTAGATATAGAATACTACATAAAATATGAAAATACATTTTCTTATC-----TTAGGGCTAACATTGAAG--------AGCTGTGAATATTGTA--AATATTTTTCACTTAGTTTTTTTCAACaatttaattatttatttattaGCCCCAATTT-CACACGGGAAAATTAAATAAAGCGAGTTTAAATAATC-TTTCAATAGCTAGTGAAAGAAAGAGGT--------AACCCATATCCCATCCAGATCTAAAGGGTCAAGGTCACCACAGATCTAAAGGTCCCATGATGAGATTTGCAAATCACCATTAAGAGGAAGGAACCTTAGCATGCCAGGCTCGGCTCTGCCACTCATGTATGAAGCAGGATTTAGAAAAGCAGCTAGTTGTATACATGTTTAGTTTTAGAACACAGATAACAACACCTGGTACACCTGAGAGGGTCAAGCAAGATAGTTTTTGACAAAGTACTTTGAATTTGCAGAGGGGGCTTCATAGATGAAATGAAACTATTAC-CTCAGGTACA-TGAAAATTTCAGAACTTGACAGAGCATGCCT-CCACCCAAGGTCACAGATGAGAGTCATGGTACACTCTACACAGGAAGAGAATACATTCTTTTTGAGTGACTGATGATTGGCACTGGTTGCTCCTGCTTTCCAATCCATCTGTAAAAACAGAAAACATTGTTTTACTTAATCTAAGGAAACAAGATACGGGTTCAGAGCACTCACATTTTCATCAATTTCTCTTGAAAAAACATGTAATTACACAATGGCTGCCTCTGAATCTTCAGAAT-AAAGGGCAAAAGACGGAATTGCAGAAAGCTGTAAGACATGAAGCATAGGATGG-GGAGAGGGATTTGCCTTCATTTCCTTCACAGAGATGATGGTCTTATTTTCTGTAAGAGAAATG---ATGAAAATTTCTAT----GCGATACATGCTGCTCTATAGAGCATCTTGGGGAATG-CTTTATT-----CAGAAAAAGAAGTGGTTTTAGGACAATAGATTAACCTAATTTTATGTTGACTTTATCTTTC-----TGTTCATCAGATAAGCTAATATTAGTATT-GTA-TTATTTCTGTACAGTATGTACAatatgtattatatgtatgtatgtatat
s HiC_scaffold_1 134485704 3240 + 233722169 ttaaaaacaactaaaataGTGTCCCTGCATGGGGGAAAATGGCTTTGAGATTCAAAATAAAAGGACACAGAATATTCTAGTCCATATTAATATCTTTCCccagcaacaaaaaataaaacatagctgAAAACTTCAAGGACAACTG--TTCAACCAGTTTCTGTCCTTTCAGAACTGCTCATCACACCCT---CACCATACTCTGGATCTGACAGCAGTG-----------------------------------TCTGTCA-----------CACAGG-ATCCCATACTCCTGGTCAGAGATAAGTGGACGACTGGGGCAAGGGCTCCTGACTAAAGCAAGGCCAATCAGATCTTTGCTTTCCCAAGGGTTTGTAATTGAGGCTGAGAGGCTGTCAGCCATTTCCTTCCC--AGTggtgaatagaaaaataaatctggACCATGGAGACACAAAGTGCAACTCATCTGCCGAGAGGACCAAAGATATGAAGTGGAGAAT------GTTCTGTATCCCC-AAggctttttgctttctgctttcctcatttctttcctctttgcttgCATTGGCTCAATTTGATTTCTGTTATTAAATGTAACCCAAAGAACCTTACCTAATTCAGGTGGGAAACAGAATATTAACAGAAGCAAAGAGGGAGAAGAACTTCTAAATCAGTTTGCTACtttacagaaatgaggcagaaaagctGAAGACCCCCAGAGATCCCAAGCAGCTCTTGTATCC---TTCCCACCTGCCTCAACCTGGAAGGAGAACAGCTATCTCACTTCTCAGACCACTGGTGACAGTATATGGTCACAGAAGTGTCTTCCAGAAAGGTGTTCCAGGATCTGTGTccagcaaaatatttaaaactgagcTGTGTTCCTGCTTGCGAACAGAGTCTCATGATTCACGGTGTAATGGAAACAGCAGG-----ACCCCCTGTGTGTGTCTTTGGGCAGCAAAATCCCTTAGAAGCTATAAAGCCTGAAACTAAAGATTCTTGGAATACAATGCATCAAGATGAT------------------------------------------CTTTTTCTTGGCACACTTCCACAAGCTTTCAATCACCTGTGAACTAAATTTCTTTCCAtatgtttttcattcatttacatTTGAGATAAAAATTATTGGCTCTGAGAGCTATTTGATGAGTGGTGACTCAATGATTCTTTGCACTGTGATCTCA--------GCTCAGTGATGATGCATATCAACCATATGATGGTCTAAGAAA-----GTGGGATCATTCACAGTGCTATCTGAAGTCATCCCTTAGTAATAACAGACTTGgttaatttctttgtctttccaa----------------CAAAGACATTTGAAAGAGGATCAATATCTGTTTGGATGctctatattaaa----------tttatttct---tttgagtgcTAAAAATGCTTGCATTCTAACTTTACAACAAAGATcctgtgtttcatttttgaaaatc-----acTTATGCACATGATTCCTAAAATATGTTAGTTGCTGCCAGTAAGAATGGTAAAAGCACAACCCAAATCTTTCAAGCTAATTTTGGCCCATTTAATCTCAATTTATGTGCTAGAAAAAATTAG-GATTCtacttatttttc--attatgagaaacaaagaaaaagtt-tttaatatgct-ATACTTAGGTTGCATTAAGCAGTTT-TGCATGGTTAATTCAGGTTCCTTCCTGACATGAATGTATGTACCATAATGACATTCAAAACATAAGCATAAAGCAAACTGAAAAAGCGGTCtctaatgtaaaatatttgagcAACTTGCCCTAATATCTGTCTGCCCATATCCTTTCTTTGATGAAATGT-GATTCTTTTTCTTATGTGGAGTGAAGCTGTGTCTATCTATCTGATGCTAAAATAGCAAGTTATTTTAATGAAACACTCCCAAATCAATGAAAAGCATCCATATACCAAGTTCTGTTGTGACATATAGcctggcattttttttc-------ttgattgggATTTTATACAGGGAGTTCGCCTAGgtataaagataaaatagatatgGTCTTGGAAAACTATTTtcatcatttaagaaaaaa-atacatattcctGATCCTTT-CTGAATCTGTCCCACTTGGGTATTTAGAATGACAAAAGGCA-GATTTTGCCTCATTTGCCTGTGAAAATATGCCTTTTTGAGAGCGTGGAAA-ACCTATATTATTTGAAGTGCAACTTgataagtgtttcattttttatgaaccccaggaaaagaaatttattccACTTTTACAAAtagtacagatttttttttattgctagaCTATCTCTATTCAACAGAAACTGGTAACATATACCGAATATTTCCCATGTAGATGGAGA----------AATATTCATAA-------------------------AGTGTAG---TAGAATA----------------AATTTATTCTTCTGACAATCATTAGAACTAACAATGAGGTTTTATTAAGCAGtgcatattttacaaatatttctcatttaatctttt-cataattttaaatgtctaATTACTAGCCCCATTTTATGAATGAGACAATGAAGTTGTA-AAATCTAAACCATCGCCTGTATTGCAAGCAAGAGAAGGAGTTGAGATTCAAACCCAAGTTTCATCAAATCCCTAAATCTCAAGGTCATAATTG-TCTAAACGTGCCT-------------------CCATTATGA---------------ATTCTA---------------------------------------------------------------------TAGCTCAGAGATAATAATACCTTCTGTGCCTGAGAGGGTCAGAGAAGATCATGTTTGTAAAAGTACTCCGAATCTGCCAAGTGCTCTTCATAGGTAAAATAGAACTATTAAGCTCATCTACATTGAAAATCTTAGAACTTGACAGCGCTTGTTTGCTGCTCGGGGTCACAGATGAGAACCA--GCGTGCTCCGGACAGCAGGGTTGTGCATTCTTTTTGAGCAAGGAGTGATTGGTACTGATTGCTCCAGCTTTTTAAGCCATCTGCCCAGATAGAAAATATTGTTGTGCTT----CAAGGAAACAAGATACTGTTTCAGAGCATTCACATTCTCATCAATTTCACTTG-AAAAACATGTAATTACACAAT-GCTGTATCTGAATCCTGAGAATAAAAGAGTGAAAGATGGAATTGCGGCAAGCTGTAAAATTTGAGGAGTACGGTGGAAGATGAGGATTTGTATCCATTTTCTTTCCGGAAATGATGGTTTCATTTTCTGTAAGAGAAATGGTAATGATAGTTTATATAAGAGCAATAGAT--TGTTCACAAGGACATCTCGAGGAATGTCTTTGTTAACAATAGGGAAAAAAATGGCTGCCGAACTAATcacaaatattaaattttgtcaattttactGCTTAGAAAAGTTCATCAAATGAGCTAATTTTAATATTAGTAGTTGTCTC---------TAAATAATTTCGTtcacatgtatgtatacatat

a score=74321
s chr3           147784236 3301 + 160039680 AGAAAGATGTCATGACGTTAACTCAAAATTGTAATGAATTCTAAATGATTTC-GAAAATGCTAAAAGGTTCATTTTTTTATGAATTAATGACTATCAATTATGTTTCAGAGCTTTTAAGTTTTGTTTCAGTGTTCATTAGTATATACCAGAATATATCACAAAGACGAAAAGGAC--------TCAATGTCGTCAGGTCAAACAAGTTG----GGCCCATATTTTACTGTGTATAGAATACAATGTTTGACTTAAACACATGAGTACTTGTAAAAATATGTCAGGGGTT-----TGCTGAGAACTAACTCC------TTGTAATTTATACTGAGCCCTG--------------TGTTTATTTTGATGGATGTTTGTTTGATGGCAAAATGTTTCTTAAGCTAGAATATAAGACGTTGTCTACATAAAAAGTA--CTTGAGAGCTCAAATTACATTCTTCTTCCTTGCTGTGCTTTGTAAAATGA---CTCCTGCTTAATTTCCTCCAATTCCAACCCTTAGCATGGACTGTGTGAAGTGGAGAGCGCCCAGCA-AGGAGATGATTAGTGAATGATTAGCCTTTGT-CTTGAATGTCTATTTGAGCCTTTTATTT--TCATGATGTTGTGTCCTTATTCATTATACAATGTAGTAGTCAGAAA------------------------------------------------------------------------------------------------------CCTAAGTAT--GCTAATCTGTAACCCTGATTTTAGATTTATGAAGTAAATATAATGCAGCCAGAAAGGGTTGCTAGTAGAAGCACCGAAAACCAAGAAAT--TGAGAAGTTATAAATAAGCATCTCTCAAAGCAGAAATGGGACTGAAAAAATAGCACTCAGTAGGAAAAGACGTACTACTCACCAAGAAGGTCCGCCCTACTCACCTAGAAAGTCCGGAGAGGCAGGGTGGGAATCTACCCTTCTGCTAAGAGCATCTCCAGGTGCAGCTGTTCTCTTTTAACAAGATCAACCAAGATATGTATCCAAATGATGCAACTCC-CACCAGTTCTCCCAGTAAGAGGTACCATCATTTTAAAGCAATTAGTTtctttacttctttttcatttaatttttaatattaatttcattgttattgttatttttatttGATAATTAGTCCTTTATTTAACCTAATCTGCAATGAGACCAGAGTTCTCTCTTGAGCAATGGGTTTTACTTCTTCTT---GACTCTTGGCTATTTCCA-AATGAGTTCTTTGGAATTAT-----------AAATAATTTG----------TAGATAAAGACTGTGTCA-----AAAAAAATGGTTAGAGCTAAAAAA-----TCTCaaaaattattatataaaaattCAACATAGCTAATATATGTCttaaaaataaaaacaaaatatgaaaacattttagaatgtataatttttatatttatttatttatttttaaaaaCTTTATTGACAC--GAGTTTTGCACCGTGGCT------------------GGCCCTCTAGGCACAGACTACCTGGGTGGCAAGGGACAGCATGTACTACATTTCCCCTTGGTTTGTTTCAATGTGGAGAAGAAAGTTTGTATTGGCAGACCTTATGCTGACTAGAGTAATTTGTAGACTAAACTGTGATGCCGTAAAACTATGTCTTGTATTGGAAAGGGCTCAAAAGACTG---------TATTTGAAATACTGCCTATTTTGATGGGAGAATAGTATTTAGATTGAGCCGAAACTAACCCTGCACAAAGTTCATGAGAATTCTCAGTAGGACGGGCAGGAACATTGCCCCATATCCTTTCACTTGTGTATGGTGTTAGATGCCTTAGGAAAGTAAGGATCTGAAATTACTACAATATTCTGATTGCTCACACAGGGTAGCAAAGTACTGCCCAGAAACTGA----GTCTAATATTTGAGAAATGCTC----TAAG-CAGAGAATTCCAAACCACTGCATTAATAC----------CTTTAGATAGCGATATGTAGACTGTTGGAAACATTC---------------------AACAAATGGAATGTTTCTTATGGTGTCA-CCAGAGAAAGGTGGTAGTTGGAC-----------AGGTAAGACGAGTAATGGAGGTTTCCTGAGCATT-CACCAATA-----GAGGTGCACAGCAACA---------TGgctaacattttacgaacagtagc---ccttttcatcgtcccagaaacttaatgaactataaaccacatcatccttagcttaagggcgaggaagttgaggtttagatggtgatatgttggggctgagaagacacagctaCAAAAA----ACAGTTACGGTTTTACACTCTAATCCTGAGTATGTCCGACCTGCTCCTTCAGTCTTACAACTATCCACGCATTAATTTCTATA-CATCCTAATGTCTGTTTGCTC--------------ATCTTCTCAAGTTGGCTACAAAGAACAGCACTTAGGAATCTAGAACAAAAAAAGCTGCCTTTTCATTTGGCCTTAACTATGGGTAGTAAAATTTTAATTACCTTTTGTTTAGAAAGTGCTACAAGACCTGAACT-GTAATCAGTGCTGGAAGTGGGCACACCAAGGGGTTGTTGATTTCCCTAGTGAATTTGGGTATCATTTATGGAAATGTAATTACAGAggagtcctgttataacgatcaatttgggcaacccccatttgatcattacatccaaatgatcaccacatacagcccataaaacagtgagcctctcaaaccagacaggctctacagtcaaatatccatcttgcaaaaccagagttattaccactgagtacttcagaaccagcacaggtcagtaacgttattggctctaattagcccttctaaaggccctaaggttttttTTTTTTAAGCTAAATCATAATGGCTTATATATAAAGGGCTTCAAATTCAACTAAGTCAACAAGTATTTATTATGCACCCGCTGTGTACTCCAAATGGGCTCAGCTACTGAAGAGAAAGCAAAGCAAATAGACATTTCTTTGTGTGGCTCACCATGAACTTAAGAAATTGTGT------AACTCATCAAACAGCTCTGCCTAAAATTAGTGGGT-GCCACAAAACCCCACCTCCCAATGCTGGTTCATCTCAGAGGTAAAAGAAAAAAGAAAAAAAAAATCTATTGCACCTGTAAGAAAAAAGAGTTTGTAGCGATATCTTTTATCATGAACACGACAGTAAAAGCAAAAAGAATAGGGAACAAATATATAATAGTTCCTGTGGAACAGACAGTGCCTTAAATCAAA--------GTGGGCTTCATTTTGCATTCCAGA-GTCAACAAATCCTCACCCAAGTCAGGGAGCAATGAAGTCTTATCTCTCATACAGCCATCCAGGAATTGTAAATGCTGTACTACTTTGTTGACTTGAGAGGGATCCCCAGCCCAAAATCAAACTCCTGGTGGGAAAGTGACAGAGCTACAGATGTGCAGATCTACATGTGGGTAAGGCAGGCAGAAGCCATACCCACCGTGCTGAGCACTTTCCTTCTGGGGACT
s HiC_scaffold_1 134495488 3334 + 233722169 aaaagaataatatgaaGTCAGCTAGAAAGTTTAAtgaattgtagatattttttGAAAGTGAAGAACTGTCAACTTATGTA--AATTAAATGTCatcagc-attttt---aatttttaaatttt-tttcagtac-----aaTTCACATTGTATTCTTTAACAAACATAAACATTATATGATGTATCTGTGTTGT--GATCAAACACTTTGCCTTTACCTGCACTCTCTAGTGAATTGCTTTAGGTattcaaattaag---------------aaaattatgttGGTAGTAAAAAATGTTCATAGCAAACTCTATTCCACTGTGATTTACAATGGACTCCAAAAAATTATTCAGATGtttattttgatg----tttgttttATGGCAGAAAGTGTCATAAGCTA-AACACAGGACAGTTTGTGTATAAACAGTATGCTT---AGTTCAGCTCATAatattctttcttcctc--ctttttaaaaaaaacgtCCCTCCTTAATCTCCTGCAATTTCAATCCTGGACATGGA----------------------GGCATAGAAAATATTCAGTGAAATATTGACCTTTGTTCTCAGACAGAAATTTTAGTCTATGGTTTAGTCATTATAGAGTGTAGTTATTTATTATAGAATACAGCAGACAGAGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAAATATAGGCTA---------CTTGAATT--ACTTGGAGGAGCAAA-----------------------------AGAGCACAGATTAACAAGAagtcatataaaaatgaaaataagattcCAAATAATTAGGTAGAGACCTGAAAGAACAGAACTCAGGAGAAAAAAGT----TATGTAATAAAAAG-----------TAAACTAGCAATTCTGCAttggaat------aattttcttttctgtgttaaaTATTCAGCTATACAGTTAGTCTCATT-AACAAAGGTAATCAAGGAATGTGTTCAGTTAGCGCAGCTCAACATGTGTTCCTCCAGTTTAAGGGCACCCAGTCTTGAGGCAATAaatctcttg-----tttttc-------ttgtgtcaTTAAACTAATT-----------------CAGagaaatagtatttta---------------aaggaaa-------tatctCT-GGGCATCAGTTTTTATCTACTTTTAGTGACTCTTGATTACTTCTAGAATAAGATTCTTTTAATTATTCTGATTTTATAGACAATTTGATTTTATATATGGGAAAATCTaatgtcttcagtaaaaaaaaagttagaattcAGAAACAAAGTCAGTAAAtttgcaggatacaaaatcaacatacggAATAtacttcaagaaaataaaaatgtggaatAAGAGTATTAGAAAGTTCTtgctttttgtaattttata---------agaGGTTTTATTGATACTTGAATTTTGTATTGTGGCTCACAGTAAATTTTAATGGTGCCCTCTGGGTACAGACTACATGGGTGGTGAAGGATGACACATACCACTTTTACCCTAAGTTTATTTCCATGTAGAGGGGTTGATTTTTGTTGGCTGAATTTCTGCTGAACAGAGTAAATTCTAGACTAAACTGCAATGCTTTATAACTATCCTTTGCACTTGAAATGgctgaaaagtttaaaataagattatttcaAATGTTG---ATTTTGATGGCATAATGGTATTTAGAGTGAGTC--------CTCTG------------------------------------------------GTGACGTTTGCCATGTTCATGATGGTAGGATATTTTAGATGTCAAGAATCTGAGGTTGACGGGATATTCTAATTAACCTTATAA---AACAAACCACTGCTCAGCAACTGGcatggccaaatatatttgaaacaCTCAGGTTAAGTCTTAAAGTTCCAGAACA--GAAATAATGCAGGAAAAAGATGGCACATATTGTTATATATGAAGATGGGAACATTCCATCCACTCTGAGTCAGAAGAaacaaat--actgttttccatagtgtcAACTGGAAAAAAGTAGTCTCTAGGcttgcaaaatcaaaacaaaagaaacaaaacaaaacccaccaaaATTACAACAATAACTAAGCAGTACCCCACCTCAAGTTCACTGTGGTTAGTGCTTTACAAACAGATACTAACTAGTTAGGTACCTTGCAAGCTGAATGAGA-AGGCAGTatattattcctattttaaaattgcagaaactgaggcttagaagaTCAAATGATTTA-CCAAGAAGATATAGATATGAAAATGGTGGGGCTAGGGTTTAAACTCATACTTCTGACTCCAACCTCtttacatcttttgtcttaataaTATGCATGCATTAATTTGCATAACATCCTAACATCTGACTGTTCTTCCCAATTGAGTTGTCTTCTGATGTTATCTACAAAGTGCAATACTTGTGAATCTAGAACAAAAa--gctgtctttttgttttggcttAAGTATGAATTGCGAAATTTTAATTACCTTTTGTTTAGAAACTGCTATAGAACCTGAACTTGTAATCAGTGCTGGAAGTAGGCACACCAAGGGGTTGTTGATTTCCCTAGTGAATTTGAGTATCATTTATGGAAATGTAATTACAGTGGAATCCTGTTATAACGATCGATTTGGGCAACCCCCATTTGATCATTACATCCAAATGATCACCACACACAGAACATAAAACAGTGAGCCTTTCAAACCAGACAGGCTCAACAGTAAAATATCCATCTTGCAAAAACAGTATTATTACCACTAAGTACTtaagaa-cagcacaggtcagtcGAATTATTGGCTCTAATTAG-CCTTCTATTGACTATAACATTCTTT-------AGCTCAATCATTGTGGCT--TGTATGAAAGATCTGAAATTCAACTAagtcaacaagtatttattatgTACCTGCTGTGTACTCCAAATGGGGCCAGTGACCAAGGAGGATGTAAACTAAATAGGAATTTCTTTGTGAAGCTCA-CATCCACTTAGAGAAATGCGCTGCATAAACTCCTCCAATAATTGTGCCTTAAACGAGGAGGTAACCACAAACTACCACATTATAATATTGGCTGCTTTCAGAGGTGAAAA------------------CTTTGGCACAAGT-AGAAAATAGAGTTTGGAGAATAATCTTTTGTCGCTAAAATGATGGCAAgaggaaacagaacagaaaattacAATA-AATAGTTCTTACTATACAGCCAGCACCTTACGTCAGAAGATGCCTAGAGGCTTCAGCTCACATTCCCAATTTCAATCAATCATTACCTAAGTCAGAGAGCAGTGAAATTTTATCTTTCACATCAATATAAATGAATTGTAATGGCTG-ACTGCATCACTGGGGTGAGAAGGATCCCCTGTCCAAATGCAGACTCTTGG-GAAAATGTGACA---TTACTGATCAGTAATTCTAGGCATGTGGATGGAAGTTTGAAGCCACAGGTGAAGTACTGTATCTTGTCCTTCTTTGCACT

a score=88547
s chr3           147787916 3761 + 160039680 [encoded data, 4109 characters]
s HiC_scaffold_1 134501485 3753 + 233722169 [encoded data, 4109 characters]

a score=107740
s chr3           147797175 2393 + 160039680 AGACAGAGTTTCTTATTGGTGAGGTTTTTGAGAAAGGAGCCTCACAACTTTTGTGGCTAGTGCTGGCTGGACAATGGATGTGACCAGTGACCATCCCGTTCACATTTAATTCTTC---CAAGGCTCAAAAGAAAGCCTCGATAAAGTTGCTGTCCGCATCACAGCCTG-----ATTTGCATTCTAGAATGTTCACCCTCCAGCTCCGGCTCCTGCTGGGCCTTCTAGCCTCTGCCTCTTCACTAAAATGCAGCCTGTTGACGAGGCCACTCCTTGAATGCTGTCTGCTAGCTATTACAAACACCGCCTCTCTTCTAATTG--AAGCCGAATCACTAGAAATCAAACGAAGAAAGAAAAGAGCCATCTTCTGCCACTTGTCCTGTCTTCTTCCTGTTCTGTGTCCACTCCCGTGTTCAGGTGTTTCTCTTCTGCTCTGATTGCCCTCCATTGGCGCCCC--GAGGCTGGTGGAGGGTCCTCCTGCCTCACTGCACCTGGGGTACTTAGCTTCCCTCCAGGTGGTTACCTTTGTTGATTAGTGTTGTCAATTCCTCTTATCCTTTCAGCAAATTTAGTTGGGTCACCTTGAGGGCACTTTAGCTTTCATTTAAATACTTTTTTTTTTTTTTTTTGAACTTGGGTGTAGTCACTGACAGCTGCT----CTCAGTTTGCTCTGTGAGATAGTCTGCAGGCTTGCTCTTCTTGTCTTCCTTAGAGGCTATATTGAGttcaaaagcacaatc----ataaaattagactgagg---------gtggcttctgggcttcgcacatctcagcttttta------------------------------------------------------------------------------gtgaggactgctggggaagttgtgtctaaagaatgaagtcttattccatttggagaaatttctaaagaacagagaatttgtagcatcctacaatgccaattttggggttaacgacccctgccaggttatgtttccttatatctaaactaaatctagcttaatattcctttaagGACAGGCAAAGTACAAGGTGTTCATTTAATAGTTGAACTAAGATTTC-TTTTTGCTCCAACATGCCCCAAGGTATTTCAGGATTGTTGTTGGATATGTCAGAGAGAAAATAGGTTTTATGTTATTTGGTCTGAATTTCCATTAGGTGCCTGTTTGTCTGAACAAACAGGCAGGGATGCC-ATCTTTAAATAATGAGCTTGGAGTTACCTGGGGAATTACTTACCGATGAATGTTACCCTCAGTATGAGGAAAAATAGCTGATAAAATCATTACTGAGGCTTCTAAAACACCCAGGTGGGCAGTGTGGGCAGCTTCACACTGGATAAATCATGTTCCTCTCATCTCTCTGGGTTTTTTGAAAGAGTTAACAAAACCCTGAAGTGTTGAGACGTAGCTGGCATTAAATATTTAGGCATTCAAAAAGGTTTTGATCAAGC-CCTACGCTGAAGACACTTAGGATC-----GAACTTTCTGTAGGACACAAGAGGTGAAAGGTAAAATTTTGCCTCATAAAACCTTGATGTTTAAAAAAAAGTGGCTAACAATGAAAATGAAAGGTAGAAATAAATGATGTTGTTAGTCAGAAAGGAGGTTAATAGGAAGGTGCAATGGGGAATGATGTTGGAACCAGAACTC-CTGTATATGTTAACACCAATCAATGTGGAAACGTTTCTGAATAATGAGGTTGCAAAATGTGTGGGTAACGGAGAATTATTTAGGCTTGTCAGT-GTGGGGAAGA-TTTAAGTGACTCCACAAGGGCCCAATAGAAATTAGATAGTTGAATAATCCGATGTCAGATAAAATTGAGTCAAGACAAGACAATGGACTTTATATTATAAGGAATAATTTAAGCGGCTGATGCACACTGATAGATTTTGAATTAACCATAACCTTTCAGGAAAAGGGTCTGACAGTCATTATGCACGTCTCAATAAAGAATCTGATCACAGCTAAGACTCTAGGAAAATGCTCTGC-----CGCACGGTGCTGTGATTAGATGGGGAGGGAAAGAGATG-ACAAAGGCCAGAA---------TTAGAAAGCAAAAGCAAATATGTTAGAGAAGTCTAAAAAGAAAGAAAGAAAGAAACATTCAAACACAAAGGCCAGCAGAGTGTTTCTGCT--CTCTTACTCATAGTCCTAAGTATTCAGGGAAATTAAATATCACAAAGTTTAAATGAAAATGAGGGGAAATGCTTGTGTAATTCATAGTGAACATTAAGAGCTACCTGCATGGAACGTCTTTGAGCTGGATGCCAACTACTGAGCAAGGTATCAGATGGGTTTTCGACTTGCAGGGGTGGGCTGAGATTAACGTTTCTCCATGAGATCCTATTGGAGACGGTATGTGAATACACACTCCAAAGCAGTTTTCCTGGCTTCTCTTGGAC-------------TGTGTCTATCACTCGGGTTGGATTAGAACTTTCTGGGAAGCAGGTATTTTGTTCCTTAAGCA
s HiC_scaffold_1 134509849 2480 + 233722169 agaaagggCTCCTTTCCCCCTGGATTTTCATTGAGGGACCCCTGCATATTTAGTAGCTAGTA-TGGaagaaaaa--------acacatgatcaCCCAATTAATGTTCGATTCTTCTTTCACAGCTCCATACATAGACActcaatttcttttatcaaggaaaCAGCCTGCCTAAGTTTGCATTCCTGACAGATTATCTTTCAGCCCCTGTTTCTGCTGCGAGTCCCAGGGTTTGTCTCCTGACCTGGATGTGGAGGGCTGATACAACC-TTCCCTGAGTGCTGGCTGTGAGCTATTGTAAACAT-ATTACTGCTGCAATTGTAAACTTGAATCACTAgaaatcaaagaaggaaagaaaagagcaatCTCCTGCCACTTGTcctgtctccttcctcctccGTGTCCACTCG-GCTCTCAGGTGT--CTCTTCTCCTCTGATTGCA-TCCATGGGGGCCCCCCTTGGCTGGTGGAGGGTTCTTTTGCAATGCTGCACCTGGAGCACTTAGTGTACACTCAGgtgattacatttgttgattagTTTTGTCAATTCCTCTTATCCTTTCGGCAAATTTAGTTGGGTCACCTTGAGGGCACTtcagttttaatttaaatactttttttttc--------aacttgCTTGTAGTCTCTGACAGCTGATATCATTCAATTTGCTCTGTAAGACATTCCACAACTCCGGTGTGCTTTTCTTACATTTAAGTTTTATTGAGATCAGAAACAAAATCTcctgttatgttgttttgaagttctgtattgtcatttccattcctttttcattttaaatttttaaataataaataaaataaataaataataaataaaaaacacaaaattacaaAAAGGGACTGAAAGATGGCTTCCTGTTTTGGAAGAACTACTAGA-AAGTCATGGCTAAACAATGAAGACTTATTCTGTTTTAAGGTATTTCTGAGGA---GAGAATTCACAGCCT--------ACCCATTTCAGGGTTAAAGAGCCCTGTCAGGGAATTTTTCCTTATATATAAACTAAATCTAGCTTAATGTTGCTTTTAGGGCAGGCAAAGTACACGATGTTCATTTAATAGTTGAACTAAGGCTCCCTTTTTGCTCTGACATGCCCCAAGGTGTTTTAGGATGGTGGTTGGATATGTCAGCGAGAAAATAGGTTTTATGTTATTTGGTCTGAATTTCCATTAGGTGCCTGTTTGTCTGGACAAACAGGCAGGAGTACCCATCTTTAAATAATGAGCTCAGAGTTACCTGGGGAATTGCTTACCAATGAATGTTACCTTCAGGATGAGAAAAAATAGCTGATAAAATCATTACTGAGAGTTATAAAACACCCAGGTGGGTAGTATGTGCACTTTCAGACTAGATAAATCATGCTTCTATAATCTATTTGGAAATTTTGAAAGAGTTAACAAAATAGTGAAGTGTAGAGATGTGGTGGGCATTAAATATTTAGACATTCAAAAGGCTTTTGATCAAACTCCTAACCAGCAGATGCTTAGGATCCATTTCAGCTTTCTGTAGGACCCAAGAGGTGAGAGGTAAAGTTTTGTCTTATAAAATCTTGAAGTT----AAAAACTGgataacaatgaaaatgaaaagtagaaataa---atgttGTTAGTCTGATAGGAGGTTAATAGGAAGGTGCACCAGGGAATGGTATTGGCACCAGATTTCTTTGAATATGTTAACACCAATCAGTCTGGAAGTGCCTCTGAATAATGAGGTTGCAGAATGTGTGGGTAACAGGGAATTAGTTAGTCTAGCCGGTAGCAGAGGAGATTTTGAGGGTCTccacaaaaa-ccaaccaaaattaGGAAGTTGGATAATCTGAAGTCAGATAAAACTGAGCCAAGAGAAGAGAATGGAGTTTATACTATCAGGAATAATTTACACTGCTGATGCACACTGATCGATTTTGAATTAACTGTAACCTTTCAGGAGATGGGTTTAACGGTCATTATGAACATCTCAGTGAATGATTTGTTCATAGCAAACGACCACAACAAACAGTCCGCAAAAGTGCA-AGTACCATGTTCGGATGCATAAGG--AGGGATGAAAAAAAGTCAGGATTCTTTcttttagaaaggaaagaaaagtgttTCAGAATACggtaaaaaagcaaaaag--------gttgAAGCAAAAAGGTAAGCA-----CTTCTAGTTACTCTTGCTCATAATAGTAGGAACTGCAGGAAATTAGATAACatgaaatttaaatggaaatgaagaaaaatgctcACGTAATACACGGTTAACGTTAAGGGCTTCCTGCATGGAACAACACTGAGCAAGATACCAACTACTGAGCGAGGTATCAGCTGGGTTACACATCTACAGAGTCAGGCTGAGATCAAACTTTCTCCATGAGACCCTATTAAAGACAATATGTGAATGTGTGTTTTATAACAGTTTTCA-GACTTCTCTTATGTTTCAATTCATCTATGTACATACCTCCCTTATTGGGTTATAAGTTCCTAGAAAGCAGAT-TTTTGTctccaaaata

a score=7117
s chr3           147798870 201 + 160039680 GACTCCACAAGGGCCCAATAGAAATTAGATAGTTGAATAATCCGATGTCAGATAAAATTGAGTCAAGACAAG-ACAATGGACTTTATATTATAAGGAATAATTTAAGCGGCTGATGCACACTGATAGATTTTGAATTAACCATAACCTTTCAGGAAAAGGGTCTGACAGTCATTATGCACGTCTCAATAAAGAATCTGATCA
s HiC_scaffold_1 137381756 201 + 233722169 GAATCCAGaaggatctaat-taaaccgggtGATTGGGCAATGTGATGATAGATTAAATTTAGTGCAGATAAGTGCAAGGTAATGCATATTAGGAAACATAATTTAAACTTTCCATGTACACTGATGGGTTCTGAATTAGCTCGAACCTCTTAGGGAAAGCATTTAGAAGTCATTATGGATAGTTCAATGAGAAAACTGCTCA

a score=50302
s chr3           147802635 1301 + 160039680 AATTATCCTTGGGAGTCAGTAGTCCAACTGTTAAGTGAAAACCAGGCTGGCATGAGGTAGCAAAAGACCAACCCTTTTGGCATGAGGCAAAGCTCATGGCTCAGCCCACAGGCATCTGGCTTTATTTCTTATGGAAGCAATTTATAATCTCCAGGGAATTCAACCCTGAGGTCCATGAGTAATCGTGGGTAGGTAGGCAG-CCTGGGCAT-------GGAAAGGCGTGGGCGGGAGGGCAGGACTATGGGCTGAACCGAGCACATCTTTGTGAGATCCAAATGAAC--ACAGGGATGGA-GGCAGCTTTCCTTTGAAAATCTGTCACATTCACAATGAGGGTGATGAAAGGCTCTGCTTCCTTGCCTTTTAGGGTGGCTTCAATATGGCCAGACTTTGAAATATAATGCGGTACTGAATTTTGTATTGAATGTGGAGGTGCAATATCGAACTATAAAGGAAGGGGCTGGGAGGGTGCTTTTCAAATCCTTGCGGCATGGGATCCTTTTGCCCTTTCCCACTTACAAGGTATGATCTTATCTATTGATATTTTCTGTCTGAAAAGACCCTCTCTCTATTCTATCAGGTTGCCCTATTTTTCATTGTGTAATAGGCTGTATTTTGAAAATGAATAGCCCCCAAACAACTTGGATATATTGCTATTACTGTGCTTTCCTTTTGAAGAAATTGTCCACTTGGCATTTGCACTTTAATCAGACTCCATGCCACCCGCGATAGCAGCCCTCCTCCCCTGCCAGACCCCCCCACCACTGCCACCCAGGCAGGGCCTCTTTTGTACATCTCAATGATTCCTGTCATTCTTAACACCAAGAGTTCCCCTCCTGACATCCTGAGAGGGTGAAACTCAGCTGGAAGCTTTCTTCCAGCCTCTTTCCTTCAAGCCCCATTGCTGCCAGTCTGAGCAGTCAGCAGGCACACTGTGTGGCTTCCTTTGTTCTTCTCATCCTTCCCCTCT-CCCACCCTTGCTCTTGATGCCCACTTGAAATCTTCACGAATCATATATGCTGGTTTTCCTGGGCCCTAATTCTAAACAGAATATGGCCACGATGAGCTGTTGGAAGTCAAAGGagaagaagaaagaagaaaagaaaaagaaaaagagaaagaaaacaagagaaagaaaaagagaaagaaaaaaagagaaagaaaTCTATGAAGAGGTATTTGCCAGTAAAATACATGTGACAGCCTGCTCAGCAAGCCGTGACTTGTGGAGATGGTAACAC------TTCAGCTGCAGTTTGGAGAATTTCTAAATAAGAATGATCAGGAGGCAGAATATAGTCTTGCAGATA
s HiC_scaffold_1 134515405 1207 + 233722169 aactttatctGGGATTGAG--ACCTAACTACTGATTGAAGAAAGAA---GCATGAGGGAGCAGAAGAAAAACATCTCTGGCATGAAGTAAAGCATCTGCCGTGGCTGAAAGGCATCTTCTTAGCTCTCCTACTGTGGTGACTTGCAGTCTCCAGGGAAGTCCGGGCTTTCACTCACAGGTGAGTTCAGGAAAGTAAGCAGATTTAGTCATTCAATTAGGAAAGTAGTGCACAGAAGGGCAGGA-TGTGGGCTGATCCTAGCACATTTTTGTGAAATGGGAATGAACTAGCAGAAACAGAAGGTTGGTCTCCTTTGAAAAACTGTCACATTCACAATGAAGGTGATGAAAGCCTTTGCTTCTTTGCCTTTTAGG-TGACTTCAATATGGCCAGACTTTGAAATATAATACTGTACTGAATTTTGTATTGAATGTGGTGGTGCAATATTGAACTATAAAAGAAGAGGCTGGGACAGTACTTTTCAAATACTTGCTGCTCAGAATTCCTTTG-CCTTTTTCACTTAC-AGATATGATCTTATCTATTGATATTTTCTCTCTGAAAAGACCCTCTGTCTATTCTGTCAGGTTGCCCTATTTTTCATTGTGAAATAGGCtgttttttgaaaatgaataG-CCCCAAACAACTTAGATATATTGCAATTACTGTGCAGTTCTTTTGAAGGAATTTTCCACTTGGCATTTGCACTTTATTCAGACTTCATGCTGCT--TGATAGCA-TACTCCTGGCTTGCCAGATCCC---------GCCACCCAAGCACTCAGTCTTTCCAATGTCTCAGTGACTCCTGTGGCTCTTAACATTGAGGGTGCCCCACCTGACATCCTGAGATGGTGAGGCACAGCTGGCAGCTCTCTTC--GACTTCTTTCCAGAAAACCTACTACTGCCA--CTCAGAAATCAGCAGCTGCACGGGGTGGCTTCCTTTATTCTTCTTCTTGCATTGCTCTGCCTACCTTTGCTCTTGATGCCAACTGGAAAGGCTCCTGCGTAACATGTGTAGATTCTCAGGGGCACTGATTCTCTTGTGAACACAGCCAGAAGGAGCTG---------------------------------------------------------------------------------GAGATGGGAACAAACCTGTGACACACTGTTTGATTTAGGAGCACAC----TGACTCACTTTACGTG-TGTGAACATTGAGCATGGAGACACTTGGCTTTTAGCAGCACTTTGGAGAATGTCTAAGTAAGAGCAATCTGAAGGCAGAATATAATCATACAGGTA

a score=10336
s chr3           147805415 469 + 160039680 GGGTCAGTGTTTAAAAGATGTGGCTAGGAATACCTACCTTCCATTTGAGGGGCAAGATGACAAAATTCCTTTGTACA-------------------GTTGCACATGC-----------------------TGTAAGTTTATGTATTTGGAAAAAAAAGATAAGCTAGACAGGGTTATTTGAGAATTCAAGAGACACTGAACTTAAAAATGATGCTTTGAAAATTGTAGAGCTCTCTCTGTGAGACAGAAGCTTGGTGTGTGACAGCAGTGTGAGTTC--TTGCTACCTGGATATGTCCAGACACAAGTGGCCATTTCTTATGTTGTCTGCCCAGCCCCTCTAATGAGATCTGAATTGGA------------------------------GGGAATGGGAGCTGTTATGTGC---GTCTCTTCCA----------CACCGTGATTGGTC--GGCTTGGGTCAGTCATAGACTTT--TCTGAAGTTTTTTTCCAAATTAG-AAATAATACAACAGAGATTTTCCCTGCAGGAAGCCAAACGGGACAGCTGTCAGTGGTTCTGG
s HiC_scaffold_1 134518243 537 + 233722169 GGGCCAGACTTTAAAATAT-----TGGGAACCGGATTCCTCTGTTTGGTG---AAGATGACACATCTCTTTTTTACATGCAGTTTCCAAACATAAGGTTGTATATCTATGTCTCCTATGCTTGGCCTTCGTACAAGTTTATGTATTTGAAAAATGGAGATAACCTAGA--GGGTTATTTGCAGATTCAAAACATACTATACTTAAAAATAATGGTTTGAAAATTGTAAAGTACTCTGCAGGAGGTAGAGAAT--ATAGGCATCATCA-TGTTAGCTCTTTTGCTGCCTGAATAATATAAGACAGAAATGA-TATTCATTATTTTGTCTGTCCAGGCTTTCCACCAAGATCCAAGTTGGCCTTCATAGTTTAGCTTGTGCACTCATCTATAGGAACAGAAGTTCTTCTATACCCTCTCTGTACCATCTCATTAACCACAGTGATTAGTCCTGGGATAGGTCAGATAGAGACTTTAATCTGAA----TTTTCCACATTAATATACAGTACA--AGAGCTTTTTCTTTCAAGAATACAAACTCAACAGCTATAA----TTCTGG

a score=48192
s chr3           147805927 2429 + 160039680 AGACAATCAA-AAGCATAGAGAGTAAGAAACAAAGAGAATCTTGAAGTGCCTTCAATCCCTGAAGCCTCAGAAACCAGCCACGTCCCTGCTTTCCCCAGGCTTG------GTTGCACCAATTCTTTAATTATATAATAC-TTTCTGTTAGCACTCCTTTGAAAAGGAATTTGAAGCAGATTCCTAT----CATA----------------ACACAGA-GAAAAACATGTCACCTTGCA------------CGGAGGCTGGG---------------------------------------------------------------------AAAGG-----------------TGTCTTCATGTGCATTCACATCTGAGTTACCCCA-------------------------------------------AACCTACCTGTCA-GCCTTATTATCCATGAAAGATACTACGGCCATCAGTGTCACCTGACTTCAAGGCCACAGAGCAGACTCCTCTCCACAACCT---------------------ATGGTCTGGTCTCTTTGTGAATTCATTGTGCTTCC-----CCAGAGTCTTT--------ACTCCAGCTGAGAGACACAGCAGGAATGGGGCCCTTTGGGCTGACTGGGGTATGGGGAGGAGGGAGGCAG-TAGGCATGAGGAGGAGACAGCTGCAGGGAAGAAAGAGTTTCC-AGGAAGATGAGCTTGCTGTTCTCTCTTTGTCCCCCTTTAGCCCGAGGAACCCACTAATAATTT-CCCCGAGTTTCCTATTTCTTGCCTATTAAGTTTTATAATCATGTGTGCAGAGAGGT-TGGAGTACTTTGCTTGTCAAAGGAGGAGTGTTGTTTATGAGTGGAGCAGTCAGTGTTACCACTTTGTCTTCAAGGCAAGGCAAGTCA------TCTGCCAACGCAATGGAGATGAGACAGCTTGAGACTTAGCA-TTGACACCAGGGGAACATGGGGTGGACACTCTTGAACTGTC--------TAATCATCATATTTGAGTTTAGGC--------------------CACACTTTCACACTGGAGCTGTGAGCAAGTAACAGAATTATTCCCCGGTGTGAACATGCCACCCTCAAAACACAACTAGATAGGGCCTCTCGTGAGCCCTAGAAGAGAACTGTCTGAAAATGTGATTGAGCAAAACAAATCATCGCTCTGCCTATGCTATAAAATCCTTCTAGAAGAACGTCTCAGGGgtcaggcaacagtggcacatgcttttgatcccatcgcacagggagaggcaagcagatctctgtgagttcaaggccagcctgctccacaaatggagcaccaggacaggcactgttacacataaaaacaaacaaacaaaaACAACGAACAAAAATACCCAGCAACAACACAAAGAAAGCCTCC-TGGACATATGGGACATATGGCCTTTCATCCCCTTCTTTCATTCCTGCCTTCTGATGCCTGTTCTCTATTGATGCTGCTCTGATTGTAATACTTACACTTGATATTCCAGACTTTTTCTGTGTTATTCATGAAAG-------CAGCTACTCCAGCAACTTTTGCTTGCTTTGTTTTTTCTTTATCAAGTTATTAAAATACCTTTGTTATGTTGACTGTTCTATACTCTCCAGAATTTCTTTGAAAATAAAAAAAAAGTTCAAAACAGCTGCTAAGCATTTACTAATACCCTTAGCC-----TTAAGAGTGTGATTGATTATTTATATAATTAATCATATGACAATTGTCTGTGTCATACTGATATGTCACACA--TTTCAAACCTCTATATCCTCATTTAAAA------CACAACAGATAG---TTGAGCATCATTCATGGAAGGCAGTCA-TTTTTCCTGTAGTTATATCTCATTCAGGGCAAATATTTATGTGCACACATTTCCTGGTAATCCTACTCTACTGAAAAT-----AGATTTATAAATGTCAGAACAAACAGTTCGTTATATGTGTCATTTAATAGATTTTTATTTTTCTATTTCAATTTTCCCCAGATCCACTCAATTTTTT--AGATAATTAGATTTTAAGCATTATCCTTGAGCTTTTCAAGCCATATTGATCTAAATATGATTCATGTTGTCAATTGGGTTTTATAAAACTTACCAGCCTGTCTTCACACA-AACTCAAGATGTGTGCCATTTCCTAGCCT---GCACTTTTCCCCTGAATAATATATAGTAAATTTGTAAGTACAGTAGCTTATGTCAGGGTGAATTATTGAACTGAAAGTTTAATATATGATCTGCAGAAAACAGTCCATTTTCACTCAAGGAAAGCCATGAGTCTCTATGGGGGAATTCAAGTTTGCTCTTCACATGCTTATTTCAAGTGTTGTGTTCCCAGCATGGA----------------TCAATACTTGTGGATAGCCTTACATTTTTCTGTGCATAAATGTGTTTCAGAATATATTGAAGAGGATGTCTGTTTCTGTAGG-AACCTGGAACATGC-----TGGTTTTCAAAT----------CTATG--GGAGCAGTAGAGGAATGCTCTGATGTTTACAGCACACTTGTCTTCAA----ACAACTTTACTCACCATGCCAACAACACGGTTAGCTCATTCCTAAGCTAAAATGAGAAAGAAATATGGAAGAATATGAAGTGGGAGTGTCTCTTTAGTCACCA----TGGTAatatgtatacatatatatgtatgta-----caaata
s HiC_scaffold_1 134519197 2495 + 233722169 AGAAGATCAACAATAATAGAGAGTAAAAA-------GAACCCT-AAGTGACTTAAATCCCTGGAGCGTTAGAAGTCACCCCAGTTCCTGTTTCCTCCAGACTTGTCTGTTGTTCCATGGCTTCTTTAATCATCTAATATACTTCTGTTGTTCCACTTGCCAAAATAACTTTGATATGGATTCTTATAAATCATATAAGAGGCACCAACGGACACAGGTGGTATGTGTGTCAAGCTCCAACACTGTCcctatgggggctgggggtttagctcagtggcataagcacctgcctcagcaggcagttgtgagtttgatccctggtactgataaaaaaggaaaaaaaaaaaaaagactgtcccTATGAAAATG-ACATCTCTGCTCACCTAGGGAAAGAAATTCTTGGCCCTCATTCTGACCCTTGTCCAACACAATCCACCTGTCAAGAAGTATTGCCCATAAAA-ACAGTAC---TTTAAGTATCACTTGCCTAAAAATCCAGCAATATATCTCTTCATAATACCCTTGCTCATCCAGTCAGAGCTTGAGTGTCCGGCTTCTT-GTGAATTCATTGTGCTTTCTGCAGCCTGAATGTGTTTATAAGAACCCCAGCTGAGGCAGACGACATGAATAGGGCAATTTGGGTTGATTGGAG---------------AGCAGATAAGCATGAGGAGGAGACAACAGCAGGAAAGAAATGATTTCTGAGCAAGAGGAGATTGCTG----CTGTTTGGCTCTCTT-AGCCCATGGAACCCAATAATAATTTTCCCCAAGTTTCATATTTCCTGCCAATTGAGTCCTATAATCACATATCTAGGGAGGCCTGAATTACTTTGCTTGTCAAGGGAGGAGTGTTGTTTGTAAGTGGAGCACTAACA--TATCACTTTGTCCTCAAGTCAAGGGGAGACAGAGCTCTCTGC-------ATGGAAATGAGGCTCCCTGAGACGTCCCAGTCAATGCCAAGATTGCATGAGAT-------CTTTAATTATCCCCAAATCTGATCATAATATTTTGATTTAGGCTTCATGCGAATCAGTCTTGTCACACTTCTAAACTGGAACTGAAGG------ATAGCAGTGTATTTCAAT-TAAAATCGTCAATTTCAAATTCC-------------------------------------------------TGAT--------ACAAA-----------CCTAT-CTATAGAA---------AGGGTCATCT------TCAAAC--------TACATATTTTAGA--------CACAGGGAC-----------------TGAGT-------------------------AGGCACT-GGATGGTCCCTGAAGCCTGTGAAATCATTCAGA-ATAAACTGC---CACATTTATTCGATCTAGGCGATAAAAATTCCTCTACGGATTCCTAAATTGCAGGCTTTCTCATTCCCTTCATTGGCACCCacttcctgtt--ttgtt---------------tctgtttgtggtGCCTGTATTTGATATTCCAGAACTTTCCTCa--tctttatgaaagaaaaaatcagcTAGTTTAAGGATTTTTGTTTATGGC----TGTCTATATCTAGTC-TGACAAGAC---TGTCTCATTGATTCCTTCATAGTTTCCAGAATCTTTttgaaagtaaatatatatacagaaataGTTGCTAATTGCGTGCTATTaccaattttcatttttcataagtGCTACTGTACACACCTGGGATTAATCTT-TAAGA--TATTTATGTCA--CTTATCTGTGACACAACTTTTAAGTCCTCACCTCCTCATTAAAGAAGTCattataaaatctaaattttaatcttattttagaaaaagctatcgctttttcctttaattatgtCTTATTCTCTGATAATATTTATGTGCACAC-TTTCCTAGTAATCTTATTCTGCTAAATCTGCTAAAGATTTATGAATGTCAAGACAAACAATTCTTTGTGTATGTcatttaatagatttttatttttctattacaattttccctaCATCCAGTCAATTCTTTTCAGATAATTAGATTTTCAGCATTATCCTTCAGGTTTTCAAACTACATTGATTTAAATATGATTCATGTTGtcaattggttttta-aaaacttataagcCTGTATTCACACATAATTCAAGATGTGTGTAATTTCCTAGTCTTCTGCCCTTTTGCCCTGCATAATGTGTAGCTAGCTTGTAAGTACAGTAGCTTATGTCAGGGCGAATTATTAAACTGAAAGTTTAATATATGATCTGGGGAAAACACTACATTTCCTCTGAAAGCAAACTACGAATCTCTTCAAAGAAATCCAGGATGGCCTTTTAGGTGTTTATTTCAAGCATT-TATCTAAAACAGGCAGTTAAGGaactgtttctttatttttgtgaata--ctTA-GTTTTTCTGTATGAAAGTCT---------TATATTGAAGATTTTCACTGTTTCTGTAAGCAATTTAAAATGCACAAATGTATTATACAATTAGTACAATGCTTATGTTGGATCAGTTAAAATTAGCTTTTATAATTTCCAAAACTTTTCCAGCAACAATATAATTTTACTTCATATAACAATGATATACACAAA-AATTcttaaattaaacaaataaaagcatGTAAA--------AAATGAGAGT-CCCCTCTATTCACCATCTTTgcacatgtgtatacacacacctACACGTAACAGCCAAATA

a score=39030
s chr3           147816589 3086 + 160039680 GGTTAACAGATCTAAGACATTT-AATATTTTAATCAGAAATTAATATAATCAAAAATG--AAAAATAACCAAAGGAAATGTTTGCAGGCTAGGGTGACTGGAGGCTGTAACACACGCCTTTGTCTTATAATGCCATTGTCT-----------TCTTTGAGTTAGAACACTAAGTCTGATATGAA--TCTGATCTCTTGGCAATAATATCCATGCAATGCACTTGTTTTCTGGCAATGTATTAGATTGTCCCAGGGAAGGAATAAAGAATTGCTTTGTGAAGATGTTTTGCTGCCTCAGTTTTCAGACATTTTCAA--TCCAGGGATGGCAAGGTTAGATTCTTGGGATAATTCCCATCGTTTGGTGT-------ATGCGATAATG--CTTTAAAATAGGACG-----ATTTAAATTCTACACTAAATTACTGGGTATCCTCA-AGCACTGACCATTCCCACTCGCCTCAAATAATGGT--------------AAGGTAATTTGAAAGGAAATAAATGCCTGCCTCAATTTAAGTCTGCCTCA--CCTAGAAGCTGCTTTTGACCCCAATCCCAGATCCCC--GAGAGTCAAACTCTACATTCCCATGTATCAGCA-TGATGATGACTTTTTTTTTTTTAAAGGACA----TGTACTTGTTTATACTAGGGATCAATATTCAGTGAATCTGCAGTT-GTTTTCTTGGAAAAAGATTTCAGGTCATTATATCAAATCTGGAAAACTAATTTCTTAACTCTTGATGATATTTCTACAGCAACTAGAATTATCTTCAAATCAAGAACTTTATGAAATATTTGCAAAGA-ACGCCTTTTAGAAACTGTTCCTGAAGATCTCAGCCAGTGATCTTACACTCTGTAAGTTTTGCAAATCAGTCTGAATAACTTGAATTAGAACATTGTGCTGTTGGCACCAGAGGGTGGGCCAAACAATTTGGATCAGTTCCAAGGTTAGAAAAAGACATCCTTGGCCAGAGCCAGCTGTCAATGTAGATATATTATTTCATCAAAGTGGTTTTTGGTCGAGCATGAAGTTAGA-------TCATCATTTGAGAATAAAGGGGAGAATATGATAAAGAAATAAAATACAAAAAATATATTTTCTTAAAATGTATGGTTTTTTTGTCTGTGAGCTGGTAGAATTGTATTTAT--------AGAAAGATGCATTCTTTAAT-TATTGCTAGCAATGATCTGACATTGGGGAAAATAGTCTCATGTTAGCTTCATCTGAAGAGAGCCCATACCTTCCTTCTCACTCACAGCTGCTGTGCATGCCTGCAACACCTAGCAAAAA----------GACCTGTGTTTGACTCCTGTCTTAGTAGTGAGTACAGGACCATGTGGTGTGCATGCCTGGACTTCTCACAGAAGTGACACCAAATAGGTATTTCCTGTGGACCCCAGCCAGCTT-TGCACAAGGTGCTGTA-GTCTCTCCTACTATCTCTCCAATTT-----CTGGTCCTAATTGATGTTTGAAAATAAATCCTGAGAGGAAtgaattccctgaacgtaccattatcatttcctaat---agtcttgtaaacatgcagtctcctcacctgtagt-atacttttcctatacccactctgagt----aattgccacactatcctttaactgctaacttagacactactcttcctacagagatttccctaaTGTGCCTGCTTGGTGCTTCTAGCATATTTTATATTTTCATGTTTTTCTTTTCTTTTTGAATTTAGAATGTTTTGCTAATGCACAAAGGACTTAAAGTGGGCATAGgtctgtgttcatgagagaaagaaaacaaaaaaagaaaaat-----------gtagag--aaaaataagagaggacggcttggaggattcagtccttactacataaaagcagggataccccagga-agcccacctgtatagtggggattccatccagagtctggtgtctacctgtcaatttgagactggaagcctgagtacctgagagaccaaggtgtagtgcttagagtttgagcaccaggaaacacctgggtcagctgctggagaacagcagaagatg--gcacctagcttcagaagagaggaaagaaAAGTGATGAAGAACAGGAGGAAGAAGGAGAAAAGGATAGAA-----GGAAAGGGAAGGATGTCCAGGAAGATGAACCTAT--TGAAAGAGgaagggaggaagagagaat-----gagaaagggagaaaggatgtgaagtgactcacctttgccctgcccttgtattttgtgtggtctcacagtcgcttagatgaagcc-atccactctgggtgggagcacaagttcttcccttgaaaatggaatctgtggattcaaatgctaattct-tctagcaatgccc-----------tactggaaaagacccaatcagtattttacaaattatcttgatagcccttaatctagtcaatttgacacctaaaaatcaactatgataAGGACTATAGTAAGGCAAACCCACTCTGTGGTT---AATTAGCATTTAATCTTACGCAGTACCAGTGCCCTCTTGTTCTCTAGGTTCTTCTCTATCCTTAGTCCTAATGACCTCCAGC-----CTGACCTAAAATAATGACTACCATGAGTTTTCATTTGCATAATACAGACCAATTCTCACTATAT------------------ACAGAAGCACAATTTATCAAGAAGATTCCCCCGCTGCAGTGTATATGTTTTTAATTTAACAGAGTCCCGTAATACTCTTGTTGCTGTCAATATACATTTTTCGAAGGTATCAATACCATATATACTGTAAAGTATTTTATTATTTTACTAATATAAAATGTCTACATAATTATCTTTGCCTTTTGAATCACTATGGTGTGGTAGAC-----------TGTCTTTAACTCTAGCTACGT-TTCAC---------TGACTGTCAGAAAACCTTC---TAACTATT---TTA--TGGTCATGTTTCT-------CTTGGCACACAG-----AATTTTCTGCAACTCTTCTGCTAAATGATCAG--------------------ACACAGAAATGAGCTTTCCAAGTCTACCTGTATTTGGAAACCTGCTTGTTGGGTTGCTTTTTCTTGTGTTTACTGTTATTTGCAGAATAATTTGGAGAAAATGTTTTTGGAGGTTGAAGTTAAGTTGATTCAGATCTTTGACCTTAATTTAA-AGTGAGTTTTGGGAGTCTAATTAATGCCATATATT---TTGTGGGAATAGTATGGTATGGCACAGTGGCTGAATATGCTGACTAAA
s HiC_scaffold_1 134526482 2974 + 233722169 GATCAATATACCTATGATATTTCAATGCTTCAATCAGAAAA-AGTGcaattaagctttttaaaaatag-----ggaaatatgtat--------gagacagaaaaatataata---acacTTAACTT-TCATGTCATTGTCTCATTGTGGGGCTTTTCAAGCTGTAATACTAAGAACACACTGAACTTTTAAGCCTCTCCCAGGAGCATTCATACAACATAC--ATTTTATGCTGAAATATTTAATTGTTCCAGGGAAGAAATCAACAATCACTAAATGAAGATGCTTTGCACACTC--CCTGCAGA-----TCAAATTCCAGAAATAGCAAATTAAGACTTTGTGACTAAGTTCCAAGTTCCAGTGTGCCATATACACAATAGTGTGCTTTTGAAGAGCTTGCTGTCATTCAAGCTCCATGCTACCTTGTAAGACAGTCTAGGAACAATGGCCA--CTCAATATACTCAAATGTTATTGAGTATTATTTTTTAAGGTATTTTGACATACCTTAGAACCTT---TTGTTCTAAAGGTGGCTTGTTCCTGGTATCCTGCCTTGATTCCAATCCAAAATTTCCTGGATAGTTATTTAATCCAT-CCCATGTAAAAGAAATTGGGGTGAactttat------aaaaaacaaaattgaactgGCTTATACCAGGGATCAGTATTCAATGAACTTACAAtttgttcttttgaaaaatgattttaatttattatattaaatctatAAAACTGATTTCTTAAGTCACAGTGACATCTCTATAGCAACTAGAATTTTCTGCAAATCAGtcattttacaaaacatttgCATGCAGATCCTTTTTATAAACTGTCCCTCAAAATCTTAGCAAGCATTCACAGATAATTCAAGTTCTGTAAGTCAGCCTGAAAAACTTAATTTAGAGCACAGGAATGTTGGCACCAAAGTAAGGTCCAAACAATTTCGATCTATTCCAAGCTCA-AAACCTATACCCGTGACCCCAGATAGCTGTCATCATACATCCAATATTTCATCAAACAGAATCAAGGTGCAGTGTAAGGTTGTATCTCTTCTCATGAGTTGTGTGTAGAAGGAAatatattgaaaagaaataaaattctaaa---atctgTTTTTGGCACAT-TAGCTTTCCTGAC----AATTGGAAGAAGTATATTTATGTACATACAGAAAGAGGTTTTCTTTAAGATATTGTCATCCTTGACCTGACAGTAAGGAAAATAACCTGGTGTTAACATCTGCTG-GGATAAATTGTGC---------------CATTTGCTTTCTGTGGCTGCACCACCCAGCAGAGACTTCATATCCAACCTGTGTCT-AGTGCTGATGTGGC--CGAGTAGAAG-CCATGTGACACACACCCTCAGGCCTCTTAGGCGACTGACACTCGTTAAATACTTCTT-TAAGTTCAAGTCAATTTCTCCACAAGCCACTGTGCCTTTCCTCTATCATCCCTCCAATTTACAAGCCATTTCTGAATCAT-----AAGAGCAATTGAGGAAGAGAT-AatgctctaaaagaaaaaaattaattttctcattgcaGGCTTTTAGGTATGGTACCATTTTATCTGGAATCAGATATTCCAGATGTGATCTATGATCAGAAAATTAC--CATCATCCTTGAAGTCTCAGCTGAAGCACTACACTTTTTACAGAGATTTCCCTACCTTGCCCTTTCaatatatctattatatatt----------------------------aatTAGAAAATTATAGTCAGTGCAGAAGG---TTAGAGAAGAC-----------TTTATTAGCCAAGGTTTTCCGAAAGAGGGAAATTAGCAGTGTGCATAGAGATAAAGATAGGAAGGGATAATTAGAAGAATTGA-TCATCAAACTGTGGGA-CAGAGAAGTTCCATGACATGCTATCTGCATACTGGAG---------------------TCACCTGT-------------------GGAGTACTTGG-------------------------TTCAACAACAATGGACCACAGAGCC---------AGAACAGCTGATTGTGCAACTCTTAGTCTGAGA------------------ATGAAGGCTTGGAAACCGCAGGGGCAACTGGTGTAAATCCCAGAATCTGAAG---GCCAAAGAACTTAGATCTGTGATGCCTAAGGGCAGCGGAAAGGGGAAATGCTAGGAGAGAAAGAGCACAGATGAGATGTAa--cacctttcctcttcctttg--ttcTATCTGGGCCTTAAGCCTGTTGGATGGTTCCTGTACACCTTACATGAATGT---AACTCTTCCCTT-----CTCAGTCTACTAACTCAAATGCCAATCCTCTCTGGAGACATCCTGCATACTGCATACTGCAAAACAGCTCACCAG-----------CTCTCTGGGCAACCCTTAATCTAGTTGagctgatgccc-aaaattaactATCACAAAGATT-------GACAAATGGA-TCCATAATTAAGAATTAAGATTCAATTTTATTTCCctctaatattttcttccatatgaAGTTCACTTTGATCTTTATTCTTAGTCCTTTGCTGCTATATCTGATCTAAAATAA----tctcatgagtttg-atttacCTACTTCGAATCCATTCTTaatgtatgtgcacatgtgtgtgtaaacacacacacagtgtg--agtAGCAATATACCACTTCActctataaaattttaatttacaaaaat---atgaTATTCTTAT-----------TATAGGTTTTGAAGTT------------TATACT--------TATTGGTATTT--------------------AAAGATATAGCTCCTTTTTTAATTACTATGATGTGTTATACAACTCTTCTCATGTCTTTCA-------TATGTATTCACTAAATGCTATAACTGCCaaaaaaatttcatgaaattatTTACTTAGCTCACCATTTTTCCTACACTGCATAGCACATAATGCCTGATGTTCTACAGGCAAACAGTAGAATGCTGAGTAAagtttgcttttccatttgcCTTGAAATGAGCT------GTATGCCTGTTTTTGGAAGCCTGAGTGTGAGATTGCTTCCTCTTGCTTTTACTAACGGTTATATAATAATTGAGAGCACAT---------------------GATGATTAAGATTTTTGGTCTTAATTTAGTTGTTGGCTTTGAAAGCATTATTAATGTCACGTACTGGGCTAGGCAACTAGTAGGTTATAGCAAGCTGACTGAGCATGCCCATGAAA

a score=59498
s chr3           147823469 2567 + 160039680 AAAAATTAAAGTCACATCGAAGCCCAATGAAAATTAACTGGAGCAGGAACTTGAAGCCAGCATCAGGACCA---------CATGAAAAT---TCTCTTGACTTTTATGTAGACTGGCACCAACCAAGTATGCCAAGTGCAGTATGCCA----AGTGC-------AGACCTACTAAGAAAAC-TGCAGTTTTGCTTCTAATAT-CATTATCTATTGAGTACTCGGTATTCAAG---TAACATGGAGAGCTGGCAGCTAAA---TCAAGTCTGGAGTGCTGAGGCCCAGGGT--TTAGCACTAGATT---------TCCAGTGTTGCCACTAAACTCAG--GGAAGGTACGGGGTCTGAAT----GAGATACAGGAAATGTTTTGCTGGTTTTCTTCTTTTCACAAGTTTTGTCTTCTTGAGGCCCTGGCA-----AGAGCTATCTATGAGAACAATG------CTACGCCTGGCATTTCCCATCAGTCTCTCATTCCCTACTGTTACATCTCTTTCCAGTGTCCCTGATCTTCTTAAGA-AGGAATTGAGTTCCTTAGTGCTTTCTTTCATTCTTCCAACTAAGAGACTTACGCAGCCCAGGGGCCACCATAAGTCTCAGTGCTATTGAGCAAACAATGTTTGATGATGCTTTCCTCTATCATTGATCGATATTCCTTTTTCTTTCTATTTGCTTATTCATATTTTGCTTAGTTTCCTTTTGAGATTAGTACTCGGTATCACTCAGAATAGCTTTCAATTTTTGCTTACTTTCCTGAGACAGCCACAAAGAACTAGGGATAGAAAACACAGGCCACCATGGCTAGTGGAGTGGAGACTAAGTATCAAAGGCTTTGTTTCCTCGCACACCTATTCTGAAGCAGATATAATGAAGGACAAGCTTCTTCTAAGATGATAATCTTTTGCAGATATTATATTGCTGGGGAGAATGTCTGAAGTTAAAACAGGGCTCAAAGCAAGGTGTGTCCATTCAGGATTTCAG---------CTGTATTCTAATGAGAACAAGAAACATATTTAGGCCAAAGAAATAATCAGTGACTTGTTGAATAAATAAAAAGAAGAACAAATGACTGAAGGATGTTTCCTGGTGGGATGATTTAAAAGAATTCCTTAGGCTATTGGAAAATGATATTTCTGGGCTCAACT-CTGCTTTAGAAACTAAAAACCTTAACCTATCTTCTGCATATCTTTGTTTCCTAAGAATGCCTGTGGGAACTTTAGAAATTTACCACATACCAGGATGGTGGAGGGGAGTGAGTCACTGACCTTGGGTGACACCTGGAATTTGACCTTCAGACTAAAGTATGCCTTTCTACTACAATGTTTCAGTTTTATAGGGCTTGTATGCATTTAGGGCTTTAAGGCAGGAATTCTCTGAGGCTTCAGACATAAATTAAAGCCATATAGTGTCAGCTTCAATAAAGGTCCCTGTTTTTTAAAATTTTTGACTTTCACTTGGAAAGACAAGATTGTGCTGGGAGGTGGCT---TTTTGATCGCTCTCAACA-TTTTTCCGGTCATTCTCAACTCCCTTTCAAAAGAACCTCCCAACAGAATTACATGAATACCATGCCCCCAAGGTGAATGCACTGTTTGGAACAACAAAATATTGATTTCCCATTCTGTTGCTTCCATTTAATTTAAACCAAAACGCAAGAAGGAGAAAGGGTTGGTGAGTGTGTA--GTGGTATAACCCCTTTCAGTGATCCTTAAAACCTTCACACATTGCCAGGGTTGAATTTTGTTGACAGATATTTATTTCAATCACATTTTCTCCTTACATATCTCTCCAAAGCCGtctttttcttctgttttcttttttatttattttattttattttttAAAAGAAAG-------------------------------------CTGAAGTCTTTCTTAAAGCCAGGCATTTTTAGCCTAGGGTGATTCCAAGAACTGATGCAGTGAACATTAAATCCTAGCCGTTTGCCCAATTCAGTCTCATTCATCATAGTAGGTTTAATTCTTAGGTCTTACTTCAAAATAGCCTCTAAAGTTACTGGCTGCTCTGTAGATGTGAGAAAAAAAAGCAGCTTTCTACCACCTCCAGCAATGTGTACTTTTGTCTTTGTGGTCCCATGATTGCTGCTCTAGGTCAAGAACACTCAGGCTTCCTCTTGAAGCACTGTTCCAGCCACTTTGCATAGCT-GGTATCTTCCCAAAGACTTCCTGACCCACATTCCTCCTCATTTTCAACACTCAAAAGCATGTTCCTAGGTTATACTCCTCTTTTAACATTG------AAAATGA----AACAAACTGGTTACTGTGAtttt-ttttttttttttttttttttttATCTCTTAGTGGTTGTAGGACTCACT---ATCTGATTCCTTTAGATCTGAAGATACGGGC--TGTCTTTCTCCAGTTTTATTATTTTACTT-GTTTATTGAATAATATAGCCTTCTTTCTTAATATTGATTTCTAAGATTTTTAATACCCCTTTGCTGATCC-------TTAAAATTGTATTCTTAATTCAATTATAACTCCTCCAtaccagac--ggttaaatattcaatatgtatcattatattaacaatttggtaaggttgcttgtactgtt---atatgttac----tagtcaaaacgtaaggaatcagaaaagttcacaaacttagcttattat
s HiC_scaffold_1 134529856 2451 + 233722169 AAAAATAAGAACTAGACTGAAGTCAAATAAAGAATACATGGAACAGAAATCCCATGACAGCATCAAGACAAGGTTTACATCAGGGAGATGTCCCACAAGAACATCATGTGGCTCAGCCCTGACAAAG---GTCACATGCTGAATACCACCGCAGGGCTGATGCTAGACCTAAAAATAAAGTGTATATCATTGTGTGTAGTATGCTTTGCCCATGGA---TCCTGTAGACAAAGAATAACACTGACTGCTAATAGCTGAAGTTTCAA------------------CAAGGTGATTAACATTAAATTCTCCATGGTTCTAGAACTGGCACCAAACTTAGAGGGAAATTTTTGGATCTGAATACTGGGCGTACTGGAACTATTTCACT--------TCTTTTCACAATTTGTCATTCTTCAAGGCTTCAGTACAATTAAATTGGTATACAACGATAAAGTGAGCTCTACATCTACCTCTGTTCTCCaacatttcattttctgtc--tgtatAGTTTTACAGATTCCTTCTCCTGTTCATCACAGGAATCGGGTTTCAAACTTGTTTGTTTCACCTTTGTAAATGTATACTTTA------------GCCAGGAATGATCTTAACATTCCTGAGTAAATAACTTTGGACAAT--------------------------------------------CTTCTTGATATCTAACC-AGTTTA--------------------------TCATAACATCCTACAA------CAAACCCCCCC-------CCAC--------------------------CCATCACGGTT----GAGTAGAGACTC--TTTTTAAGGATTTACTTCTTTGC-TACTCACTCAGAATCTGCTATTATGAATGGTAAGCACCTACCAACTAGAGGCTCTTTGGCAGACATTTCATT-TTGAAGagcattaattaaaattaaacaagattCCAGGTAATGCTTTTCTGTGtggaattttaggaattttaaatgtaatataatGAGAGCAAAAAATATGTCTAGACCATAGAAATAATTGCCCACTTACCAAATAAGTGGTAA-ATGAACAACTGAGTCAGATAAAGATGAGGATGAAATGCCTTAAGAGATATCTTTAAGCCATTTACAAATGGCTCTCTTGGGCTCAATTATTGCTTCAAAACCTAA------TTCTCTGTCTTTTGCATATCTTCGTCTCCCAGTAATGACCATGGGAGCTCAAAATGTGTAATACACACTAAGGTGGTAGATAGTAA-GAGTCGCTGACATTGAGTGACACCTGGAATTTGACCTGCAGACTGAA-TGCACCTTT-----AAAATGTATCATTCTTATAAGGCTTGTATGCATTTAGGGCTTTAAGGCAGGAATTCTCTCAGGCTTAAGACATAAATTAAAGCTATATAGTGTCAGCTTCAATAAAGGcatctgtttttcaaaatttttgactTTTACTTAGAAAGACAATGCTGCTCTGAGAGGTTACTCTCTTTTGATAGGGCTCAACATTTTTTCCAGTCGTTCTTGACTCCC-TTCAAAAGAGTCTCCCACTAGAATTACATGAATATTGTG-CCCCAAGGTGAATTCAGTGTTTGCAACAACAAAATATTGATTTCCCATTGTGTGGCTTCCATTTAATTTAAACCAAAACGCAAGAAGGGGAAAAGACTGGTAAGAGAGTACGCTGATATAACCCTTTCCAGTGATCCTTAAAAACTTCACACATTTCCAGTGCTGAATTCAGTTGACAGATACTTATTTCAATCACATTTTGGCCTTACATATCTCTTGGAAGcc----------------------------------------tggtttaaaaacaaaaaaacaacaaaacaaaacaaaacaaaacaaaaaaaccctaaaatcttTCTTATAACCTGGCTTTGCTAG-----------TGCATGAA--AATAAGGTAAACATTAAACCGTAACGGTTTGCTCAATTTAGTGCCAATTATC--AGTTTCTTTAATTCATAGGCCTTACTCCAGAGTAG-CTCTAAACGTATGGGTTGATTCACAAACGTGTG--GAAAAGGCAGCTCTCTACCACCTTCAGTAGCACGTAT-----GCTTTGCACTTCCACTGTCACTGTTCCATTCTAATAGCACTGGAACACATTCTTAAGTTA--GGTACTACTATCGTGCATATTTCAATATCATACTAATTATTTCCTGATCTG-ATGTCTTCCTACTCACAAAGATCAAAACAACTTTCCTAAGATATGTTTctcattttgcattattttataaaacCATAATGATAAACTTAACACTgttattttaatgtcttttttttctgctttgtttatgtGAATAATTGATGAAGTCTCTGACATGTGATTTTTTTAGACTAGGATATATACTCAGTATTTTTCtcagattttatcattttttttcatttaatagatATGGTAGCCCCTATCCTCAATATTAACTTCTAGATATTTT--TATCCAATTGTTAACCCACTGActtaaaaactgattttaaaatacagaaataactaTCCTATAAAAGACTAtgttaaaaactatatatatatagctgt--------cttggttacttttctctcactgctggaaCAAgacacccaacactcaaaatg-aaggaa--ggaaatgttt----atttagctcactgt

a score=174291
s chr3           147830014 6246 + 160039680 [encoded data, 6698 characters]
s HiC_scaffold_1 134536126 6303 + 233722169 [encoded data, 6698 characters]

a score=38280
s chr3           147837094 886 + 160039680 GCTGTCCA---TTTTCTGAATAGCTGCAGTAGTTTAGCACTCTTTGTTTCTCTGTGCACTCA--GTATCACTCCTATTTCTCATTGCAAGTGTGTGTTTTGCTTGGGTTTGTTTACCATGGCATTCCATGATTGTAAAAGGCCTAT--TATGAATAAACCAGTGCCTGGAATGAAGTGGAACCTTGATTTATTTGGGTAGAACCATTTTCCAGGCCTGTAAATCATATTTTGGTGTCCACTTACCTTTGCATTCTTTCTGAGGCACAGGCACCAAGGCTGACGAATGGGAATCAAATGAAGTGTGCTAAGTGCCTCTGCCAGA-GGTTTCATCTGCCCCCCTGGTGGGTTCTGAATTATGTCCACAATACATCACCCAACTTACTTTCCTTTACTTCTCTTGTTTAGTGTTGTCACAAATAATATCAATTGGCCATTGACCATGAACTCTAAACAGTAGTAAATTAATGAAATAAGCTACATCTACCGAACTCATCTGCCCCCAATTTGATTTTAGCCACCTTGGTAGGGCCAAACCATT---TATAGATGAACTTTATTTATTAGACAAGCAGTTTCAGG-GTTCTCCACAAA-TGTGATACATAGCATCTTGAGTGATAGTAATGAAACACTTAG-----------TAATA-----ATCACTAAGAATATTTTGTGCTCATGGAATCTGCA-TCTCTGTCATCTCATGACT----TCTGGGAAGCTCCCCTATCAGGAGCAGCTGCGCACTGGGGGAA-GTACCATTCTTCCTTCTTGTTCTGGGGAAA--GAGTAAACATGGGGAGTGTTACCCAGA--TCACTTAGTGATGGAACTTCTTGGGTACAG-GGGCAAAGTTGTCTATTGGCACGCAGGTGACTGTCCCAGCTCTGCTGTATGCATCTTG-TCCTTTATCTTTCTg
s HiC_scaffold_1 134542848 905 + 233722169 GCTGCCCACAATCCACCAAACAGTCACAGTTATTTAAGCTTCTTTAGTGCTCTGTGCACACACAGTATCATGTCTATCTCTTGGTGCAGGTGTGTGTTT-GCGGGGGTTTGTTTACAGTGGCAGAGCTTGATTGTAAAAGCCATGTCTTATGAATAAACCGATGCCTGAAATGAAGTGGAACCTTGATTTATTTGGGTACGTCTCTTTTCCAGTGCTGCAAATCATATATTGGCGTTCATTTACCTTTGCATTCTTTTTGAGCCACCGGCACTGAAGCTGACGAATGAGAATCAAATGAAGTGTGCTAAGTGCTTCTGCTGGAGGGTTTCATCTCCCTGCACGCCGGCCTGTGATTTATCTCTGCAATATATCACCCgacttattttcttttacttattttatttagtgTTGTCACAAATAATATCAATTGGCCATTGACTATGAACCCTAAACAGTagtaaattaatgaaataagCCACATGTACAG-ACTCATCTGTCCCCAATTTGATTACAGCCACTTTGGTAGCACCAAGCCATTTGCTATAGATGAACCtcatttattaaataagaaaCCTCATGCATCCTTTATAAACTGTTATGCATAGTATTTGCAGTGATTTTAATGAAACACTTAAAGCAGGCTCTTTTATATCTCCATCACTAAG--TATTTTATGTTCATGCAATAGgcattttccttcttcctgtgaCCTCAGTCTGAATAACT---CTATCGGAagtagatgcaccttgagagAAGGGGCtgccctctttttttgtttttgggaagATGAGAGGGATTGAGAAGGG--GCCCAGGATTTACCTAG-------------TGGATAAGGTGGTTAAAGTCGCCTTCCTACACAAGGAAGTGTTTCTCTGCTCTGCGTCATCTCTCCCATTCCTGCATCCTTCTG

a score=83342
s chr3           147847162 2278 + 160039680 TAACTTTTATAGAATAAAGAAATATTAACAGTGATCC-AAAGTAT---ATGTTAGGAAGGGCTAAATATGTTCTGTTCAACCTTTTATACAGATCCACTTGACTATATTAAAACCCAGTGACCATATGTAAGCTGACAACTTCGATTAAGGAATTTTTAATTTGAACTTGACTTAATCCTTAGTTCAAGTGGAAAATCTGGTGGTAAGGGTCTTAGTCCTCTGCACCTCTGTCAAACACTG--ATCCACAGAGACAGAAAGGGGAATTAAGCCAAGGAAATCTACCATAAGTAAAA-GTTGATGGAAATGAACCCAAAAATA--CAGAAAATAA------AATAAAATCATGCAATTTACAGGGCACAGCTAAATGTCTTCTACATGTTATATT----------------AAAATAAGTTCCACAAATTAAAATT-TCAAAGAAAATGAGTTACAAACAATTCACCCATCAATCTTGATTTTGA---ATATTCTGGAACAAATGTTTGAGCTGCAATGCATTTGGGTCAATTGTCAAAGTCCTCCACCAGAGACTAGGTTAAAAATTAATCAGCAATAGCTTTTCCTGGCCTTTGTGTGTT-GTATTAGTCTAATCAGCTACTC-CCCTGCGGGGG-AAAGGCTGGAATTAGAGTTGTCAAGATGAAGTAAATTGGAAGTAGAAATGATGAATTTTCCCTTTTCCTCAAAAGAAA-CACAGATCTTTAAAGAGCAAATTTTCTTTTTACAAAGTGGGAAT--ACTCCTGTCATCTGATATGTTAAAATAGAATCAACCGTTACCCATGGAAAGGGAGAACCAGTCCATGAAGCAGGAG--GAGTAGAGCAGAAAGAGTTTTCAGAAGACT-----TCTAATTCCTTCTCTATAGAGTAACAAATGGTTGTCTTTTCA-TTGTGATGCATTTTCTAGCTCAATGCCTCCACTCACAT--------CTGCAAAA------------AATTTAGAAAATCACACTTGTTGTGAATGT--------GTTTTCAAGGTCTTGGAGATTGCAGATCCCTTAACTCTTTATGATTTTGGCGTAATCAAGGCTA-----------CAAAGAAATGACTTTCCTAACATGAAAGTCTGGCTAATGAGGAACACCTGTGGTACCATAAACTTCCCCAAACCAACATCATTTCCCATGCATACAACAAAGATAGACCATCATCAAACACCTTC----------CATTGGGGGGAGAGCAAGCTACAAAATAATATACAATCATCCTGTGCTACAAGGACATGTCTTTCTTACCAGGTAAGCACTAGGGCCATTAACTTAACACCCTCAAGGCAAAGCTGTAATGAACTATGGATCATAGCATGATGGAAGTCACAGGAGAGTCATATAACTGAATTCCTAACATGAGCTATTCATGAAAAAAAAGAGACATAATTGAAGTGTTTCTATGCTTGGATGCTATAACGtatttttaataaaaataaaaaCAGTAATAGAAAAAGCA--GAAAAGAAAGGCA-----AGTATCCCACAGCAGCTGAACCTATTTAACAGAGACTCTGCATATTCCCTATCCCTTGGGTAAAAGTATGTGGTTAAACCTGGGAGGGGGGCAGCATTTCA-TGGGCATATGTCACCCTTCATATTACCACCAGCAGAAACGACTACAGAAAGCGGCCCATTAGTTTTTCCTTAATAGACTGTTTTGCTTCCCTCCCACTGCCACACCCTTGGGATTTGTTGACACTACTTCAGTGTAGATTTTGGTGGATAGTTTCAATAATTAG---TTGCATAACCCAAAGCTGACATTTTCCCTGTCACTTTAGTATATGCCACatattataaaattttatttttaaGGTTACTTTTTACAACATGAGCGATTCTAAAAGGCAGCTTTGTAAATATAATATACTTCATATTTTTCTAAGATGTGCCTTT--GTTACACAAATTAGCATGTCAAGACAATCTATTCAATGTAACTTCATCATGCTCTGTGGAGGACCAACGAAAGAAAGCTAACAGCTCCCAGTAGGAGGCTGCAGTATGTCTAACTCACACCTAAGGCAATAGCCGATTCATAAGGGAGTTCTCGGAAAATATGTGCCCTGAACGGTACAACTTCAGATGAGAACTGGATAGAAGTCCTCACTGACGTAAGAAAAAAAGGGAAAAAAATTCCCACT---------GAGCA-CAGAAGGAAGACATAGTTCTTAGGCAA--TAACA-ACAATTATTTTACAATAATGCCATCATACAGTAGAATCTTGGCACTGAGCAAGAAAGAGTTAACATCAAGCACAGATATAAGATACCATCTAGATAAAAA--CAGAAGAAAAAAAGCCTGCATATAACAAATAGttgctgtgtattgctttt
s HiC_scaffold_1 134557341 2333 + 233722169 TAACTTTCTTCAAAGAAATGATAATTATTTGTGAACTTGAAGTGTTTTACACTA--AAATACTAAACTTGCTCTTTTCACCCTTTCGTAGAGACCTACTTGACTATATTAGAACT-AGAGACCATATGTAAGCTGACAATTTTGATTAAGGAATTTGCAATGTGAACTTGACTTAATCTTTACTTCAAGTGGAAAATCTGTTAGTAAGACTTTCTCTCCTCTGCAATTCTGTCAAGCACTGTgatccatagagacagaaagggaaattAAGCCAAG-AAATACACCATAAGTAAAAAGTTtgtggaattgaacccagaagcAACCATGAAAGAGCTGCTGGGGAAAAAAAGGCAATCAACACTGCAAAGCCAAATGACTCCTGCATCCTGCATTGGCTGAActtgaaagcaaaataatttctacaaattaaaattcttaaGGATAATGAGTTGCAAATAATATAGCCATCAATCTTGATTTTGAGTGATATCCTAGAACAAACATTTGACTTCTAATGCATTTGGGACAATTGTCAAAGTTCTCCACAAGAGAATAGGTTAAAAATTAATCAGCAATAACTTTTTATGGGTTTTATGTGTTTGCATTAGTCTAATCAGTGGCAAACCCTGCAGGGGCAAGGGCTGGAATTAGAGTTGTCAAGATGAAGTAAATCGGAAGTAGAaatgatgaatttttcttttccctgaaaagaaaacatagatctttaaaaagtaattttgccTTTTACAGAGTCGAACCTAGGTGTCATAATGTAGCATGTGAAAGTAGAGTCACTGATTTCCCTTTAAAGATCTAGAACAGCCTATGAAGCAGGTACCGAATGGAACAGGACTA-TCTCCAGCACACTCAATTTCTAATCTATTCCCTGTTTTATTACAAATAGCTGTGTTTTCCCTTGTGATGGACTCccaactcccccccccccacacacacacacatacctacaAAATTTGTGCAATATGCTTCAGAAAAATG---TCACTGTGATTTCATTTTCAGGTTTTCAGGTTCCAGGAGAGCTCAGATTTCTTAACTCTTTATAATCCAGGTACAATCAAGGGTAACACGGCCTGGTGAAGGAAGTATTTTCTTAACATAAAAAGAGGGATAATGGAGAACACATGTAAAACTATAAACTTTCCCAA-CCAACATAACTTCACATGCATGCCATAAAGAATGACCATCATTGGacatctttgcttcttttttatttttga-----tatgttaAAAAATAGTGCACACTCAGCTTGCACCATTGGAACACGGCTGTCTTA--GGGTGAGTGCTGGATACATTATTTTAACACCTTCAAGGTAAAACAATCATGATCTACGCA------------GGAGACCACTACAGAGCTGCTTAACttgatttttaacaaaagaaatttatgaaaa------tcCTCAATTGAATTGTTTAT-TGTATGaatgctataaaatatttttattaaaaataaaaacagtgatagaaaaaaaaaagaaaagaaaagaagacagaatatCCCAAAGAGACCAAATATATTTAACAGAGACAAAGCTCACTCAGTTTCCCTGCGGTGAAAATGTGTGGTTAAACATGAGGAAGA-----TATTTAACTTGGTGTATGTTACTGATCACAGCAACACCAGCAGAAGC---TACAGAAAACAGCCCATTAGTTTTGCTGTAATAAACTCTTTT---TTCCCCCTACTGGTACACCCTTGAGATTCCTTGACATTACTTCAGCATACTTATTGGTAGATGGCTTTGATAATTGGAACTCTCACTATTGGATATTAACATTTTCTGAGTCACTTTAGTTTATGTTCAGTATTATGAAATTGGGTTGT-AAGGCCACTCTC----ATGTGGATGATTCCAAAAGGGAAGTTTGTAAGTGCAAAGTGCTTTCTATATTTTTGCATTGTGGATTTATGTTTCTCAAATCTGCATGTCAAGACACTC-ATTCAATATAACTTTATCATCTTCATGGGAGAGCTAATGAATGAGAGCTAACAGCTCCCAGTTGGAGCCTTCAGTGTAGCTAACTTATACCTGAGGCAATAGCCTATGCACACAGGAATTCTGTGGAAATATGTGCCCTGAGATGTATAAGCACACATGAGAATTGGATGGAAGTCTTCACTGGGGTAATAAAAAGAT-----ATAATTGTCTCTAATTGTGCCAAGCACCAGAAAAAAGACATGGTTCTTATGCAACGTAACACATGACAATCTAGCA----------CAAAAAGTATGTATTTA----TGTACCATAACGAGTTAGGTGCAATCAAAGAAATATGTAACCCTGTaagtgaaaatgcagaagaaatgtgATTCATACATAGCAAAACATTGCTTCAAATTATTTCT

a score=14014
s chr3           147853107 1100 + 160039680 TCTGGCTTCCCATTG-CTAAATTATACT-TGTCTTTTAAATTGTTTCTGAGGTTACAATTAAAGT-----TGGTTGTTTTCCCCCCTCTCGTTTTCCTAACAGAACAAGTTTCAAATGGGAAGATACCTTTGTCTCCATTTTCTTCTTTTTAATTCCATTGCCAATGGTTAATGCTACTTAGTAGGCAATATGGTAGCCTTGCTCATACTGACTATAAAATACCAGAGTAAGACAGTA-ATAGTGGCTTGTTGGACATGGAGAATGTCAAGTGACACATGGGTGTCGAAACCCTAAAAGAAACAAAGGACAGAAAGCCAGCAGTCTGATTTCCTCTGTGCTACACAAAGATACTGCAACACACATGCAAGACTGTGGAATTCTAGCCGCCACTAAAGACCAAGTTCATGTGACATCACTGGTTGGATTGCAAGCCAACGTCCTTGGGAGTGTTGGCCTCCTTCCAACAAGAATCAA---CCGCAGTTCAGCAAGCTCTAGA---TCTGCCCTGCTTG-TGCAG---------------TCCACAGCTTTGAGCATTTATCTGCACTGTGCAGTCACTGGTGTAATCTTG---CCCAAGTTGAAGAGTCAATGTTTGATTCTGTGCATTTGCTGGATTACCATTATA--------GGCAGGTTGGTGCTTG-GTGTTTGTGTAAACCCTTATACATATGAAGAAGGAAAGAAAAA------GAAATCAGGGACGGTCAG---------------GGTGATGAAC--ACACTGTCATAAATGCTACATTTTAGCCCTGTTATTCTACCTTTCCCTTTGGATGTCATGTGCAAGTTCAAGGTCCTTTAAACACCTTTTGTTCACAGGCCACCTGAACTG--------------------TAGACAGTGAGTGCTCCCAAAGTCTAACTCAGCGAATCACAAACTGTTTCAGCTTTGATGCTCTG----CTGTTTTGCAGGTGTGCTTAGGAAAGCTTGTTATCGATGCTATATTGCAGATGTGAAGAAATTCCCTACAAGTGTATAATGATAACCCATTAATAAAT-AATAAGATTAAGA--ATTAGAATCATCTATCAGTTATACAATAC--------ACAA---------AATAATGATGAGTACAATTAAACTAAAATTTGAAGA--------TCCCTT--------CTTATAGTAACT--ATTATCAAAACTTGAAATATGTATTT
s HiC_scaffold_1 134567858 1148 + 233722169 TCTTGCTACCCTTTATCTGAGCCCCACTATGTGTTATACACTGTTTCTGTGGTTATAATTAATGTCTTTTTAGTAGTCTTTTATCTCAGAATTTTTTC-----------TTGTGAATT--AAGACATCTGCATC-Ctactttcttaaat---atttcactgCTAACAATTACTGCCACTTTCTATGCAATGTGGAAGCCCTGGCCTCTTTGACTATAAAAAGAAGGAGTAAGACAGTACAGAGTGGCTTCTTGGATGTGGGAAATGCACAATGACACATGGAGGTTAAAACCCTCAGAGATAAATGGGACAGAAACCTAGCTGAGTGATTTACTCAGTGTGCTGTAGTGAATCAGCAACAAAACTGGAAGGATATAGGATTTCTACTTTTGGTGAAGCCCATTTTTAC------TCACTTACAGGCT---AAATCAAAGTTCTAGAAATTGCTATCTTGCTTCTAGCAAGATCAAACTCCTGAAATCC--CAAGCTCTAGATGTTCTGTCCTGCtcattacaggcaagtgccaccagtTCCAAGGCTCTGAGCAAT------CACCATCCCCTTATTTCTTCCATGTTAGATTCCAAG--GAAGGACCAGGTGTTGAGTGCATGCATTTGTAGTA----CACTCTAAAGCCCCTGGCA---TGGTccttgtgtgcatgcatgtggcCTTAACCATGTAGTAGGGGAAATTCAAAGAATTTGAATTCACAGATGGTGAGTGAGCCGTGGTCCGTGGTGAAAAATGAAGAGTGTCAT-ACTGATACATTTC--CTCTACTGTTTT-----------------TCATGCCTTAGTACAGGTTCCTAGATATTGCTTAGATTTGC------CCTAAGTTATGTTCGAGTGGTTCTGTGCCTGGACTGTGAATCCTCACAGAGCCTAAATAACTAGATTGTAGCCTATTTCAGCTTTGACACTTTGACCCCTGCTTCTCATCTATATATAGCAGTATGTGTTGCAAATGACAAACTATAGACGGAGAGAGA---ACTTAAAgtgca-aatga------atgaataaacaaataaaaataaaaacactgggaAGTTTTCTCCATTATGCAATACTAAGTCATATAATGCCAAATGAATAGTGGCAAATACATTAACACTAAATGGGGAAAagtgggttttctcttctaacTTACTTTTAATAACTTCATTATTCaacatttcaacattttttt

a score=99228
s chr3           147859517 5024 + 160039680 [encoded data, 5391 characters]
s HiC_scaffold_1 134572266 4562 + 233722169 [encoded data, 5391 characters]

a score=121436
s chr3           147881274 5413 + 160039680 [encoded data, 5820 characters]
s HiC_scaffold_1 134597196 5404 + 233722169 [encoded data, 5820 characters]

a score=48887
s chr3           147888354 2528 + 160039680 TTCAGGTCTTGAAACTTTGATTAATACTTATATGTTTAAGATAAAGTACCAAGGTTCGTGATTCAATAAAGATAGCATTTATGGCCATCTGGCCTGACAGGCTTTGGATAGTAAATGCCAGAGGTGAAAGGTGGGC-GGAGGGCCTTATTGCCTGCAGCCCTCCACAGAA-CAGAGACCTCAGGCTGGGCAGACTTCTAAAGGAAAATGATGTCCTTACATTTCCCCTGCTTTTCTTTCTGAACAAACTTTCTCTTAATGGTCCTTACAGCACATTATTTTCT-TTTTAAAAGGGGTAATATAGGAATCACAGGACTCTCATAACCAAAGTAATTGCCTCTCAAGCCAAGGTCACTAATTAGCCAAATTAAATTTTTCGTATTCTCAACAAGCACATGCACAATTGGGCACTTGCTCTTCCTCCAAAGGA--TCCTAATGGCCACCCT-TTTTACCTAAGCAACTTTAAATGTGTCCTATGGCGTGCCGTTAGTTTTATTAGTGAGGTGCTTAACTTTGCTCATGAATAATAATCATAAAGCATGATAAATTTTTAAATACGTACAAAAAGAAAGCTGAACTCAAATCCTTCTCACAGAAACTGATTTTAACCCAAATCAAGTATGCCTTGAATATACCTTTATTTGGTCTGAGAAT-TAATACTGCAGTCCAAAGTGACTCGATGATACACTGCATTTCCTACATGTGCATTTTAGAgatgagctagagaaagtacccaaggagctgaagggatcggcaaccctataggtggaacaacaatatgaactaaccagtacccccagagcttgtgtcactagctgcatatttagcagaagatgacctagtcagccatcattgggaagagaggcctcttggtcttgcaaactttatatgccccagtacaggggaacaccagggccaagaagtgggagtgggtgggtaggggagcagagcagggtggagggtatagggaactttcgggatagcatttgaaatgtaaatgaagaaaaattctaataaaaaaAGGGGAGTAGACTATTGAAATGATTAGTAACTGATAGCTTTGTAGGAGTCATTGGTTTCTATGATAGTTGATGATATATAATTTAGTGATATTCAGATAATCTTTCTCCTGGTTCATAGAAATGCAACATTTTCAATCTACTTTTAATAAAACAGGAATTCAGAAAAAAAATTTGCAGGGCCCTTGTATCATAGGAAGCCTAGAACGCTAGATCCTGCATACCTTGGAGCCATGTTTGAAGCCAGCACATGAGTGATGCTCTCTTTGGCGATGCACCATGGCAAAAAAGACAGGATGTAGGGC---TGATTGCATGGCTGAATTCCAAGTTGTTCATTCTAACTTTTGTCCCACTTTAAATTAAAGAAGATAATTAAATTTGGT---GCTTTTATTAAAGTTAACAAAATATTGCCATAGATTAGACACCCTACGAATCTACCTCTCAAGAGCCTTCCTTAATCTTCTGA----AAATGTCTTGACC-GCAGTTCTGTCTTGTTCGGGGTTGTCTTTCAATTTGCATGTAAAATCCTGGTATCCCTGTCACCTTAACTTTGCTCCAGATGGGTCTCTCCCCACGGTTTTCTTTCCACTTATCTACGCAAGGAGTTGTGTGCCCCAAAGTGTGAAACTGCAGCTTGTAAGCCAACAAGGTGTGAGGACACTGGGGAAATAGAATCAGAT-TTTTGGAGCCTTTACTCTCATAACAGAAACCATAAATAACCAAACCAAGTGGCAAAAACAACAGAGACAACTGCAACAAGCC------ACAACAGCCATAAATAAGCCTTTT--CCTCGTGCCATCCAGGGGAGGCAGCCTGGTACT-CAAAGTCCGCACTTTGTCTTCCCAGCCCATTTCCACTTCCAGTTGTTGTTATGAAGTCTTCTC-AGGCACCAAGGCCTGGA-CTCCATGA--CCTTGTGC--------TGGAACTTATTGTTTTTTATATTTGGTGTCTGTAAGCATCCACGAATCATATGCTAGAAGGACAAAGGTC---TTTTAGCAGAAGTTATCAGGTTCTACTGCTTTTATTCTGGGACCCTGGTCTGACAGG--TACAAAGGACTAGAG-----GAAAGCACCTTGGTCTGACAGG------------TACAAAGGAAAGCGCTTCCCCACCACCCCTT-------------------CGCATAGCTGAAG------CTCTTAGATAAAATGAAGCCTTCCCTTGTGCTAATTCTTCTCTATGTAGTTTGATGAGTTTAGGGCAGGCAGAGCTGTGAAATCAGAGCAAGTGTCCTGGGGCACACTACGCCTCCA--CTCCTTGTTTCTTTCAACAGATCATATCTTGTATCTTTAAGGTCTGGTGGGTCTTGTTTGGAAATATTTTCGAGTCCAAATAACTT---AATTGCTGTCACAACCAGGTAACTGACTCAATATATGACAGCAATCAGCCAATCA-----CATCTATCCTACAGTTAACGGGAAGGCTTATCTGCCACAGAGG---------------TAGTGTAATTAATTAAGATATTCTCTGTGGTAAAGTAATCCACAAACATTGAGATCCCACCTCAACATGAGAAGAGCAGTCAGAGCTAT
s HiC_scaffold_1 134603776 2295 + 233722169 TTCAAATCCTGGAACTTTGATTAATACTtgcatatttcaaataaaatactaaGGTGGGTGATTCAATAAAGATGACATT-ATGGCCACCTGCCTTGACAGACTTGAAATAAAGAATGGGAGAGGTGAAAGGTTGGCCAAAAGGGCTTATTGCCTCCAGCGTTCCGTGGAGTCAGAACTCTCACTACCATGTGCTATCAAAGGAAAAATGATatgcttattttttttat-ctatgctTTCTGAGTGAAACTTCTCTTAATAGTTTTTATGtcacattattttctgttttagaaatGGTGATATAGAAACCACAAGACTCTCATAACTAAAGTAATTGCCTATCAAACCCTGGTCACTAATTAGccaaattaaatttttcatatacTCAACAACCACTTGCACAATGGAGCATTTGTTGTTCCTCCAAAGGAAGTCCTAATGGTCACTCTATTTTACCTAAgcaattttaattgcattttgtgGCATACCATTAGTTTTATTAGTGAGTTGCTTCAGCTTGCTCATGAATAATAattgtaaaatacaataaatttttaaatatgcattatAAGGAAAGTGAACTCAACTAGTTTTCTTGGAAACTAATTTTAACCCAAGTTGAGTTTgtc-----tataaatttcttcagtCTCAGAATAGAAAGCTATGCTCCAAATTGGCTTAACGTGATACTATGCTTTACACTAGTTTATTTCAGGAAAAGTGTAAGGA--------AAAGATCTGAAG-----------CCTATAAATTG-CTGAGAATAT----------------------TTTTTGTCACTATC-----------------ATGACTTTGTC-----TAATTGTGAAGA-----TTCTTTTGTCTGAGATCTT----------------GGCGATCTTGGGGTCTGAGTCTTGGTGAT--TTGTGTAAGTCAGCAGTAC-----------------------TCAGGTCAGC-------------CTGGTGCTCAGTtctgagaaagaaa-------acatttttaagaacattaaaaa--------------------------------aatatcagatgaaaaagaaagcag-----CTCAGTTTGTCTT----------------------GTAGTCCCACTCTAC---------------------------ATGTGTGCTAAGCACT---------GTGCTCCAGGTACACAGGGTCAT-------TTGGACCTTTACTTAGAACTAGCACATAAGTGGTGCTTTCTGGGGACA-ACAACAGGGGagagaaacaaaagtaaaagaattgtGCTTTCATATCTAAATCCTCTGCTGCCTGTCTCAAATTTTACCCAACTTGAAGCTGCAGTTGG-GACTACATAGGATTACACTTTCTTTGAGGCAGAT-ACGTCTTTTAGTTGGTTAAACAGCCTAAGAATTCCCTTTTCAGTTATGATTCCTAAATGCCTCAAATGAAAAGTCTTCTCTAGCATTACTTCTCTCCTCCACTTCTTTCTTC--------CCTAAAATGCTGATATTCTTGCCACCTTGACTGTGTTCTAGATGTGTCTCTCCat-ctttttgttatcttttgaTCAAAGCCAGGATATGTAAGCCCAAAAGTCTGGAATTACAATTTGTAACCCAATAAGGTGTCAGGGTGCTAGGGAAGTAGAGTCAGACATGTTTGAGCCTTACTGATCACAACTCAAAACAT---------AACCAAGTAACA----------TGACAGCAGTAACAGACCTCCTAAGCAGCAGCACAATAAAAACCTTTTAGCTTTTTGGCCCACA-GAGAGCTAGCCGgttactgcaaaaatctcactgT-TTTTCAGAGGCCCTTTCCAGTTCTAGTTCCTTTTATGATAACTTCTCTAAGCATCCAGGCCTCAATTTCCATGATGTCTTGTATTCACAATGTAGCATTCACTGTCATTACTTTTGGCTTTTTACA-------------CATGTAATAGAAGGACAAAAGTTAAGTTGTAACCCATGTTGTCCGACTTTAATG----------GGGGGCTTGTTCTGAGAAGACAACAGAGTTCCAGTGCTATAGGTAGTATGTGGTTCTTTCTAGGTGTGTGATTCCTATAGACG-----TCCTCTCTATTAACTCTTGAATCCAAGTGTATGGAACCCAAGAGCTGAAGCAAGTCCTCAGAGACAAAAAGATGCCTTCTTCTGTCTTGATTCTAAATTATGTGGCTTA------TTTGGGAAGGA------GTGATGCCAGAGCTGGGGCCCCAAGAAACACTGC-CTTTCATTCTCTCCACATCTTTCCACAAATC-------------------CCTGCTGAG-CTTGTTTGGAAACATTTTCCAAAccaaataacttttaaattcctatcattaCCAGGTTACTGATACAAC-TCTGACAGCTATCAGCTAATCATTTCCCATGTATT------TTAATGGGAAAGCTTATCAGTCACAGAGGAACCTtaattagttttaatttaattaattaat---cttCCCATTGTAAAATAATGTGCAAACATTCTGATCACACTT--ACACGAGATAAACAGCATGAATCAT

a score=48158
s chr3           147891537 2552 + 160039680 aGCATCCACAGGCCCTTTAACAATG-AAAAGTTTTACATAAAGATTTAAAAATCCACAAAAATAGCATGCATAGAGCAGC-----------------------------------------------------------CAAAAAGAGACAGACTTGAGTCTGTGAGCACCGCTCTGATCT-------CGCGATTGCTTTCTGA-CTTTCTCTTTCTCCAT---AAAAACAGTGGCAGCCACAGCTCCATCAAGCCTGGCAATTAGCttttttcttttctttttttttttttttttAAATCCAGAAATATTTTGGAAAGATGAAGTGTGTATGTCAGTTTGCAAAACAGCATGACTCTGTTAGCCTTTGTTCCCTTTATCCCAAGCCAAAAAATGTAGCTCTGATAGCATCTGTTTCCACTACTCATGCTAGCCCCAGCAtc-aaaaggcagacgggcggaggagagacttctgaaggcttttgcttgactgttcctgaccagaaagaccgctttcttccatgcgttcaccgtgcttctcttacttctgtgtctGATTCATTTGTTTAACTGTAACATAACCTGAAAGAATG----GGGA--AAGATCAAGGGTTAGGGATTGCATT-------------ACCGAAAA--------CAATGATGGCGAG-AACTTTCACTTGGCGTAGAAGCA-------AGATGGTCCCCCAAAAAATCGAGGACAGAGAG--------------------------CCTGGTCATCA-ATTGTGTGAAAATTAGGC---AGTGTATCATAGTAAGGATGAGAATTT---------TGGAAAATTTAATATAACCAATCATATTATCTTGATTTAAGATATCTTGCTGTGAAAACAAGGACAGAAATATATTCAGTGTTTACTGTATCTGTTT-----GTGGAAACTG----TGGTAGGATGCACGGAGAACCTATGATTTTTTTTTAAAAGCAAATGAGTGCACCTACTTAGGAAAAACACTATGCCTA-TCACTGCTGCTTCACAGTTTATTCTGCTTTAAGTCTATGCAAGAATAACATGCTTATAGTGGCTAAGAAAAATGAGAATTTATTAAG--AAAAGAAAACACCATGTACCATATGGAAGTTAATCTCCTTATCCAATCACCTCAAATAATATAATGTTTGTATGAAAAAGAAGCTCGGACAGAAAAGATACACAGAAAAGGAGGGATGGGTAACAATACCAGAGGCATTATTTGATTTTGT-TGTGGGCCTT--GAAGTTTGTTGTCCTTGTTGACACCAAAG-AATACATACTACCTGAACATGATCTGTGGACACTAGTTACAAAAACTATTAATATGGGAATAATCAGTGATGTGC----ACATGTTTTGTAACATGTTTTATTAATATCTTAAAAGTAAATAACCAGAAGTGAGTATGCATTTT----TTTTTA----CATTTCAGTGTAGCTTCAATCATTGTT--------ATTAAAATATGGATGAATTTCTATAAAAAAGAAATGTTGTTTATAGCAGGAAAGTATGCTGTCCCTCTAATTA--------TGAGCAAGTTTGTAAAGCATTTTCTATAACTATTGATATACTCAAAATGACTTTATGTATTGCATAATGTAGGAAGTGTGCCCGGAAGTGTGCCCCGAAGGCTGGCAGATCTGTCA--GTCACTTGTGTACCACAAGCA--------------TCATTTGTGCCCACAGTCTTTAAACCTATTTG-------TTGCATTTTGGGATGATTCTGCTACAAGTACAAAGCTTTCTCTTAAGAGTTTTC-TCCTACAT-TTTAATATTGGAAAGTAGCTTGATCTGACGTACATGAGTTTG-CTTCTGTTTGTTATTCATG-GCTTTCTGTTTTCATCTGAACCCCGGTGAT-AAAAATCTAGTTATGTGAGCCAATAACTGTGTGACATAAAG-CCATCTGTTTAGCCTTGTATGCTTTGACTCAATAACAGGAAATCGGTGACTTTCTAAAAC----AACAGG-TTTCATAAGAGATGG-AGGGAAGGTTTTGCTTGACTATGATCTTTGGAGAAGTTACCATATAATAACCTCCCCAATGGTCCTCATTCTCATTTGTAAACTTGCGCAC-ATGCACAGACATCCACCACTGTCTGCTAGTCACACAGTTTTCAGTCCTGAGTATTTAC-TAAACATTTCAGTGCAGT----AACTAAAGG-----TAACTACATGAAAAGCTACTTTAGGTAATCTGAATTATATGTCCTTTCAGGGCACTGACTGCATTGTGTTGTTCATTCTTCCCATATATGCTAAAATTTAAT-AACTATACAT-----AAAAAATGTCCATTTACCACCTTACCTCTTGTTTCCGTTGCTGCCTCACACAAAACCAAGTTTCAGGGCATCCTAT-TGTAGCTGTCTCCTTCCCATCCAATCGAGACCTTCCAAAAGCAGTTATGTGATAGCAAAGACCTTTGCTGCCTTGCTTATGGGCTCAAAGAAAGACTGGTTTTGAATATTCACCAAGACTTATCACTTATAACCTTGAATACTAAAAGACCAGGGAGTTTAACTAGGTAAATTAATCTACTATT------GATAGTT--------TCTTTAAAAATGATTTTTGTTGTTTTCTGTATTTACAAAGACTCATCTAGATGATCCATACTAGAAAATATACTCTTCTCAAATAAATGGATGTAAAAAGAAT---TTCAATTTC----TGAATTGTGATCGGTCAGGGTTATG--TCCAGTTTATCTTATCCGTATAGAAAA
s HiC_scaffold_1 134606230 2606 + 233722169 AGCATCAATAGGTTCTTTGGAAATGCAAAAGTTTTGCATAAAGATTTAAGA-TTCACAAGAATGGCTTTTAAAATGCAGctgcaggacacacacacacacacacacacacacacacacacacacacacacactaactgCCAACTAGAAACAGAT---AGTCt------agtgttttgatttgttttgttttgtttaatctctgTTCTCTATGTTTCCTCACTCAAGGAACAGTGACATTTAGAACACCATTAAGTcttgtaatttcctttttc-------------------------acccagatatattttggaaaaatgaaatctgtatgtcagtttgcAAAACAGCAAAACTCTGTTAGCCTTTGCTCCCTTGATCTTGAGCCAAAACTTGCCTAGCTGATAGCATCTGTTTCTACTACCCATGTTC-CCCAATCATCAAAAAAGCATAAGGGCGGGGAAGGAAGTTCTAAAGCCTTTCTCAGGCCTGCTCCTTACCAGGAAGACTGCTTTCTTCCACGCATTCATTCTGCCTCCTTTACTGATGTGCCTGACTCAGATGTTTAGCTGCAAGATAATTTGGGAGGATGTCAAGGGAACAAGATCAAGGATTAAGGATTGTATTCAACTCCATGTTCACGAAGAAAGGAAGTGAAATGATGTcaagtatttttcatttgaaaaataatcaaaaagagagacagacagacagacagacagagagagagagagagagaaagagagagagtttttcatcTTTATCCTCAGATCCTGTAAAAATTATGTTTGAATGTATTGGAGTAAGGATAAGAAATTTAACTCTACTGGAGAATTTCAGAAGAC--ATCAAAGTGTTCTCAACTATAATGTCAtgc---aaaagcaaag---gaaaagtacT--ATGTttactttatcatttttcttgataAAAACTGGGCATGAGGGGAGG--TGGAGAATTTATAA----tttacaaaagcaaataaatttgcTAGCGTGCAAAACACATCTTTCCTGCTCGCTCttgctttctattttattcttcccTATGCATATGCAAGAACAACATGCTTTTAATGGTT--GAAAAACGTAGattcattcagaaaaaaaaaaaaattatgtaacataGGTGATCCAACTTGCTTATCCTTCCAACTCAAATAACCCAAT-TATGTATTGTAAAGGAGATGGGATAAGAAGGGAACA--------GAGGAATA---AACAAAGGAAAGTGCATCTTTTTGTCTTGTGTGtaaactagaaaaaatatattggCCATCTCAATACCaaggccatatata-tatatatatat-atatatatata--------------tatatatatg-------ttaatcaTGTTCCTAAGCAGGTTTGCTAGTATATTTTACTAACATTTTGGAAACAAGCATTCAGCA---CACATAcaactttaactttttaaaagcaattc--tGTAATTTCTATGATCATTTATTATCCATTAAAACTTTAATAGATTTACATGAAGACCA----TTGTTACTCTAAGAACAGGTTCATAGTACTGTGATTACATTCCTGTTAACAAATATGGAAAGCACTTCCC-TAAGAATT-CCATTCTCAAAATAATCCTTGGTATCATTTAACTTGGACTGTGT-----------------TGAAGTCAGCAGATTTCTCAAGGTCA----TGCACAAGAGACAATTGGGTGTTATGCTCCTTTGTATGCTGAG--TTTAGATTTTCTCATACACACTGGCATTTGGGTACCTTACCCTTATAAGca------tttcatttaaaacttttagttCTGTATCTTTAATATTGGCAAATAGCTTCATTTAATATACatggttttgatttatatttattggtagagctctttctgttttcttctgatgCTTAGTAATAAAAAATCTGGTTATATGAGCCAATAACTTCATGATATTAAGCCCATCTgcttacttttaaatgtttttactcAATAACAGGCAGTCGGTAGCTTCCAGACACAATTAACAGGTTTTCACAAGGGGTGGAAAGGAAATCTTTGAGTAATTATAGTCTTTGGAAAAGTTAACACACATTAACTTTCCAAATAGTATACATTCCC-TTAGTAAACTTTCACAAGGTACATATACGTTTCTCATTATGCTCTATTTACCTAGTCTTACACtctaaatatttacttaaatattttagtgCAATATCAAACTGAAGAATGATTAACTGTATGAAAGCTAATTCTGGGTAATAtg------------ttacaaaacat--------------------tttttagcatatttactataatttaataaaatagataTGTCTGACAATATGCACATTTACTAATTCATCTTTCACCTCAATTA----ctcagacaaaaataaataaaagcatattcGATGCACATGTGTTTCATTCTAGTCTCATCTATGCCTTCCAAAAGTAG------------------------------ACTTATG----CAATGAAAGATTTACTTTACGTATACATTTGCACTATACTCTGCAAACTTGGATCACTTGAAGACATTGTAGTTTAA--ATGTTTGTTAACCTTCACTTTAATAAGGTATTTGtcagctattttttaaaacaactttt-ttgTATTATGTACTtgcaaaatcaca---aaataaaatttatt----tctattttatcctgaaacaaatgaaagataaaaaagtgGATTTAACCTCATTTAAAGTTGCGTT--ATTAGAGTAATTACTCCAGTTTATTTTATCTGCataaagga

a score=54879
s chr3           147895916 2754 + 160039680 TTTTGACTGACTGAAGTTCCGTTT-----ACAAATAGTACAATTTATCATTTCA---TTGTAATTTCACAGTAGTTTTCTGATAACATCAGAACTTTTGAGACACATCAATACATTGACGTTAAACATGCCAGGCAAGCAGAAAGCGATCTTTCCTTCTTCAGAAAGCC-TTGCCTTAAATCTAGGGAAGAA---------------TAAAGGACTTGTGGTTTGGAGCCTGGTTCTTATGAATCTGAGATTCATATCTGTTGTGTAGTGTCCATCAAATCTTGGAGAAAGTATTTACCCAAG-GAATTCCAGTTTTATTGTGGATAATAAGACATA---AGAGTACCCACGACATCAACCAGTT-GAAAATTAA-AACACATAATTGCTAGCA-------ACAGAGTTTGACATATATAAAACACATTCTGCCAATATTAACTTCTATTATGGAGAGGATTTCCTATTTAGAGCTACCAAGATGGCTCATTTGAACAAAATAGAATTTCGTAGGCAAACCAATGTGTGCTGCACTATATTTCAAGTTAAAATTTAACAGTACATATGATCCTTGTGACTTGATGACAATTATCAGAAAATAAGAACTAAGCCAA-GACATCATGAGTATGTCTAAATTCCACACTGATGCATGAAAACACACATGATCAGCAGCACATGTGGCTCAATAAGATGTCAAAAGTCTGACAGGATGTGAACTTCTCTATGCAAAAACAAATAGACTCAATACAGCTGGGACTGCCAGATCATAATTCTTGTT---TTAATTATTTTTATTGT--GTTTTTTTCTCTAA--TGAGTGAGATA-AAATTGTCACTATTCCCTTATGGGTTAAAATT-AAGTGGAAATATACTCCATGTAGAACCAAGTAGGTCTAAGATTAAAAACAATAATAATGGGGAAAGTAAC---ACATATTTATTATTTTTCTTCAAATTTTGTTAAAATGACAGATGTTGAAATGACTTAAGGATGTGAGTGCCTTTCTGTGTGTCTAGTACAATGATGTAGTAGTCTCCAAGATAGCATGCAATGTGGCAGTTGCTATGGTAACAAGATGTTTTTCATTGAAGAGCAGTTAAAATGATGGTGTATAAATAACATATGTATAGTATATTGTCTTTGAGTGAATGAACTTTCCCCTTGGACCATATGAACATGTTTTCTTCTTTTTAGAAA--CTCGTCTATTTTTGATGTGCATATGTATCTAATAGGCTAGTGATCAAGTTGCCCTCTTTGAAGCTGTACAGGGTCCAGATCTGCAGGGAGAGAAGAAGAGGTGGCTCAGCATTGTGTATATGTGTGCTAGAAAAGCTGATAAGTGGGATAGTA-------------AAGTACTGTGTTAAAA--------------ACAAATCCACTTTACAGGTAAATC-----TTAGACCCACTATTTTGGGAACT-GTAGGTGGTATATTCAATAAGGAAATGAGTCATTT----AAATAAAAACATATAGGTAGCCAG-------------------TAAATGAAAAATACACTAAATGAACAGTAGAGACCTC----------------AGAACG------------------CTGCCTTT------------------------CCAGCAAGTCTTGCTTTTAAG---CAGAGATAATGACAGCTTAATTAACAGAAAGAGTAGGCCATGGCATCAAGGTATCAAACACAGATGGTATTGATGTAAAAATATAAACCACTGTTCTTATAAAATATTACATAAATGATACTTAGCAATGCCAAAATTTGGATGTCATTTGTCCT-----------ACCAGGCAGTACAATGATGG------------------CTATTCATTTTAGAGTCAACTAACCAAAGTTTCTTAG-CAGGAAATTATTTATTGAAACTTTAGATTGTAATATGAGAACATAGGTTTCTTATAAATGTGAATTTGAAGTATGCATTTAATGTCACaataaataaataaata-aataTTCTCAATGCTTTTGATTAAAGTGATCAAAATCAGAGATCCAAATtgtatgcatatatatgtatacctggacatatatgtatgcatatagaattaattacctctatattatgtagatgtactaa-tatatatgtattgcatttttgtgtgtgtaGTAT--TCATGTGCACATACA-------CCGAGTATGTTATATATTTAGATACATCTTAAGTCTCTGAAAAACTTAACTATATATAACTATCTAACTATGCTATAATATAACTGTGGCATTTTGTATCTCCATATAGATATATATACACATATACTTCATTCCTTGTCTAACACACAAAGATCC--AGACAAGTGTTATGT-GAGAACAGGATCTTAGAAGGG-ACTTTATTGGTGCAGAATTCTACCAAATTCTGGAAATTGGTTCTTCCATTGTGAATCTTGTGTGAAGTGAAAGGATTAACAAGAAACAAAA-TGAAGGGTGAAAAATCTAACATAAAATTCCACTCTGCACTTGGGATCCATGAAGAACTGTACGCTTGTTGTCTATATCAATGTATAAGAAACAAGAAC-----TGAGAAGAAAGGCTAGAGCAAGCAGCAAGAATCCATA------GATTCAACAGATTTCAA------AACAGGTTGAGGACTCCTAGAACTGAAGCATGACGTCCTAAGAGCATGGATTCATTTACCTGCTTTTTGGGACATCCCAAAAAATAAAACAATGTCTTAATAATAGATATCAGTAATACAAGTAAAGAAATAAAATACTCATTAATGATTCATGAATCAA---GGAGGTTTCAGAGAAGCCTATTCACTAATTATTATAATT-ACAAATAAAGTAATATGGTGA---TCATTATAAACCCAGTAAAAATATTGAAGTGCATTCAATACTAACAGTGTGTTAGACAATATATTTGAAATATAAATTGTCCCATTTTAATAAT-TTAAAATGTAAGA
s HiC_scaffold_1 134610070 2788 + 233722169 TCTTACCTCACTGGAATTTAATTTGTGCTAGAAGtacttaattttgtcattttacagTTGTGGTTTCATATAAATTTTCCTAAATaattagaacttttaaaataaaaaa------tggcattAAATAAGTGAGACAAGTAAAAAG---TCTCCCCTACTCAGGACATTAGTTGTCTT---TCTGATAAGGAACCCAATATTCTGATGTAAATAATTCATGCGTTAGTGCCCAAGCAATGTGGGTACAAAATTGAGATCATCTACTTGCTATCTATCAAATCTTCG-GACATTATTTAATCTTGTGAACCTTACTTTTACTTTCTTCAGCATGACATAGTAACAGTATTTGGGTCATTAAACAATTTGGAGATTAAGAATAGGTAATGACTAAAGTACTATCATAGACTTTGGCATATAGAAAGCATTTAATAT--ATGttagatatt-ttatttgtatgattttCCATGAATAGCTATAAATATGGTTTATCTGACCAAGATAAAGATTTACAGAAAATACAAT-TCTACT--AGTATTTTTTACGTGAAA--------GTATTCATTATTTATGGGACTTGATGAAAATTATCACAAAATGAAAATCGAGCAAAAGATAAAATGTGCGCATCTGAATTCTTTAATGAAGAATGGAAGCCTATCTGTTCCATGCTACATTTGACTCAGTGAGATATCACCACTGTGACAGCGTATGCACTTCTCAGTGTAAAAGCAAATAGATATGATACAGCCATAATTGTCAGGTCataattctttttctgttaaaGTACTTTGTtgtctgtttcttcctctaacaTAAGTCAAATATAAAATGTCAACATTCTGTCATtggttaaaatttaagaaaagatacACTCTATATAGAACT------GTTGATTGTTAAGCAcaacaataaaagtgaaaaaaaactaacatatttatta-----ctttaaactttattaaaatgGCGGATTTTGAGATGACTTATAGATATGATTGTCTTTCTGAGCATCTAGGATAATGA-GTGGTAGACTCAAAGATAGAATGCAATGTGGCAGTTGCTATGGTAACAAGATGTTTTCCATTGGCAAGCAGTTAAACTGCTGACATATAAATAACACATGTACAGTATATTGTCTTTGAGAGAATGACCTTTGCCCTT-GACCATAagaacatattttcttcttttttgaaattcttgtcTATTTTTGATGTACATATGTATCTAATAGACTGGTGATCAAACTGCCCTCTTTGAAGCTACACAGGATGCAGATTTGTGGTGAGCAAATAAAATGTGCCTCAATATTG----TATATGTGGTTAAAAACTTGATGGGTTGGAAATTAAAGCACTTGAATTAAGTACTGTGCTACAAGTATTTCACACTTTATAAACCTACTTCACAATGAAAACAGAGGGCAgatgcattttcttttaatttggtaGGAGGACTTCTATATATAGTAATTAATATTTTGTGCAAGGGAAAACACAGATGTAGGCAGAACAATCACAAATCTCTCATATGTGAAGAATAGGCAGACTG--TAGAAAAGGCCTCTGCAATTAAAGCACCAAGAGCATGGGTCTATGTGTATCTTCTGCTCTCTGGCCTGGTGCAAAGTGCTTAGTGCTtgaaagtcttatttttaaaGGTGAAAGAGAAT--TAACTTAATTGGTTCAAAGGGTA-ACAAGTGCAGTAAAGTTGCATATACAGATATAATTGCTACTTGAAGGCAAG---------TTACCAAGTTTTGTGGAA---ATACTTGATAAGATCAAACTTTAAAAATGGTTCGTCCTTTCTGGTTTTAACAAGACTG-ACAATGGTAACAGCAGTTTTACTAACTTCTTCCTGTTTCCTGATCAACTAGTCATTCCTTCTTAGCCAGTTAAGTGTTGATTGACATTTTagataataatatataaacatatggaCTTCATAAATTTAAATTAGACTTATGTATTTGA-----------------AAGTGTAACAGTCTGAATGCTTCTGATTAAAATGGCCgtaattaaagataaaaaatatatgtcCATGTATATATG--TAAACAAGTAT-------TATAAAATCTATTTATTATA-ATTGAGAATCCATGTTAATTACATAACTAATGCATAT---TGAGTATAGCATGCTTATATGCATATAGAATGTTTTTTGTTTATAATGTACACCTTGATACTTTATATGTAGATATAAAGATACTTTATATGtagatata-aaatatgaattcatATA-----GGCATTTTGTATC----------------CACACTTGT-----ATCACTTATCTGGAACACAAAGGTTCAAAGACCAGAGCAATCTAGATGGAAGGCACTTGGAAGTGCACTTTTTGGGCCCTATGTTCCGCTGAATTCTGGAAA----ATCTGTTTCTGTGATTTTTGCACAGTTTGcaggaaagaacagaaaataaaagtctAAGGTGGA-----TAATAAGAAATCTTATTATAAAGGTGGGATCTGTGAAGAACCACAGACTTA----ATatataaatgaagaagaaataaagtcaaGTTTGA----AAATACTAGA--AGGCAACAAGAAACTAGAAAGAATGAttgaataagaataaaataaacaataggatAAAAACTTT---AATTGATGCTTTA----------------ATTCA--------------------------------------------AATAATACACATGTAGTTTATAAGT-AAGAAATGAAACATTAATAGATGACTTGAAAGCTAGTGCAGAAATTCTGGAAGATGCTATGTTTCAGTTATTAGAATTAATGAGTGGAATAATATTACAAATGCAAAGATCAACACA-TAAGTATAATAAATTATTACAGATACCAACAATAtgtta---ataacatttaaaatataaattattcaatTTACATAATGTCAAACTGTAAAA

a score=15994
s chr3           147900952  984 + 160039680 GTCCTTCTTCAAGC-CACTGTACTGTTGTTGACCCACCAATAAGGAAGAAGCTGTCACAGGGAATAAAGTATTCTGTACTTCATTTTT-AGCTTGATATTACACCAACAGAACGGTGTAGTAAATGCCAAGTTGATTAGATAGGAAGC--ATGTTTTAAATTAAGCCTGGTTAAACCTCTTGAAAAGATGAAGGGGTTTTAAAGATTCCATTTTATTCCTATCTCCTCGGAGGAGGAAAGGGGTTTCCCAATAAAATGCAGGAAATGA---AAGAAAAAAACAAGCCCTGGAAGCTGCAGAGCTGGGCAAGGTACAGCAGAAATGGGTTCAGAGGTAAGGCAAGACATTACACCATGAAAAGGTTAG-------------------------AAACCAACAAATGCTAACACAGCTGGCTGAAGAGGCAATGATGTGAACTTTAAGGATTCTAA-------------------TGCAAATTAGCTGCCAAGAGCCTTAAGAAATGCTTCCTGTTT---CTGGAGAAAAATCATAAATGGTGAGGAATCTTGGCCTTCAAAG-----AGTTAAACT-------------GTGGCTACA----CAAAAGAGGGC--CTACTTCAGTGCA-CTGTCTGGAACAATTCCAGTGAGGATGATATTGGAGGAGCAT---GAAGAACTTTCTGACCATCAGGAAGGTCCAACACCAGAAGAGTTTTGTTCAGTGT---GGGGTCGCTTTCACAAGGACTGTCTCCCAGCGGGCAGAGAAGATGGAGAGAGGACACCAGACACACACACCAGATATCACAAGTTCTTCAACACCAGACTTAGCTTGTTTCAATATATGCATGAGAGTTTTCCCCTCATTTTTATGGTGTCGAATCATAAC---ATGTCGTGttataataaaaatttaaataaaGTAATC---ATGAGGAAAATGAATTATTATTTATTGGACCTTATAGAAAGGAAGATTGATTGCAAA--TATAGGTTATCTCTCAAAC----------TACA-----AATAATAAAATATGGTAACATACCAAAAACATATTAATAAAATTGCATTTTTAAAGATTTA
s HiC_scaffold_1 134616019 1048 + 233722169 GCTCCTCTTCACACATAATATATTACTGTGGATGCAACACTAAATGGGA-GCTACCAAcgagattaaaa-attttatagctcATTTTTTAACTTGATGTCACAAAGAGAGAGTAGTTCTGGTGACTAAAATTTGATTAGTTAGGAaacttatgttttaaatttaaactggTTGAACATCTTGAATAGATAAAAGGATTTTACAAATTCCATTCTATTCCTATCTCATCAGAGAAGGGGAAGAATTACttaataaaaaagaggaaattatttgaaagagaaacaggaacTGAAAGGTTCAGAGGAGGCCCATATAAATCAGAAGTAGGCTCATGAAGAAGGCAAGAAGTTAAATAAGGAAAATGCTAGCCTTTCATGCATCCTATTTTAAGAAAAACCCACAAATGCTAAAATACCTTATTGAAAGGGTGGTGATTAGGCTATTGAGTATCCTAAGATTGAGAGGAGTtcagtttacaaaattaaagtcaaAAGACCTAAATA--------TATTTAGACTAGAGAAAAAT--TTAGGGTACAAAAAATTTGCCCtttaatttattcaaataaaCTTCAGGTATTTGAAGTATTTACAAGTCCAAAAGGAGACAGCCCTTTCAATAAATCAGTCTTGGGTCACCCCAATCTCGTAATTTCTGGAGTAATACAAGGAAGAACTTTCTGGCCAAAATGAAAGCCTAGTATTATGAA---TTTCCTTGGAGTAACGAGGTCTCTAAGACACAAATCAT--------GGGCACAGATCATGTAGAGGTGAGGTCAG------TCAATGGGTGGTATAATTTCTTCCAAACCAgagatattttatctcattttc------aatgttttttctatatttt--tggtgTTAATTCATAGCAGAATATTACATCCAGGGAATTGTTTAAATGTCGTTTTTGAAATgattaaactgtatt-ttatttttagagtttcACAGAAATATAAATTCAATGTGAACccacaaatgatttttaaatcatttgggAAGTACAATTTCAATAGCAAAATGTCCTAAGACAGCAAAGACCTTTcgagaa------atttttaataaatta

a score=8384
s chr3           147902344 706 + 160039680 TGAATTAAACTTCTATAAAGG-CCGTTGAATAACTACAGTCAATGCTAGGGACCC-AAGAAGGTGGCTGG----ATGACTGCCAACCTCTCTTAGGCTTAACAGTGTCTTCCCAAAGG-GCGGGCCTGTCA--TGTGATAATGTGCAAATCTGATGCTCAGGGATGTAGAAGAG--AGATAACCCAA----------------------------------ATTAACTTGCATTGGTCCAGACCCTTTCCCAATGATATTCACAATGTAAAGATCTTAGTGGCTGCCACTACAAATTACATTAAGAGACCTAATCCTTGAGCCACTAGATGTCCTTGTGGAGTTCAAGAAGTCAGCATCTAAAAGAATGTACAAA-TTGAACACATCACAGTG---AGATCATGACCTACTCCCCATCTGCCCTGAATCCAAGTGTGTTTGTGTTTTTCTTGACAATAGTAAAacacacacacacacacacacacacacacacacacacacacacacacacacacaAATCATTTGGCTCTTTCGTGCCCTAC-------CAAGT---------GAGAGTTATTGATGACCGAGAGGTCCAGAGAGTGAGGCCC-----TCTTTTTCTCTCTTCAAATTGAACAGTGTTGCTTTATATTTTATCTTTAATTTCAGAAAAAAAAATGTGTTTGACTGGAGTCCTCTCCTATGATGTGCCTTTGAAAGACAACTGGCAGTATCACTCCTATGATGCTCTATATCAATATAGCTCTAAAGTCTCTGAGAA
s HiC_scaffold_1 134617065 690 + 233722169 taacttAAGTTGCCGCAAAGGGCCGTAGAGTACTTTTAGTCACTACGGCTAACTCTAAAAAGACGGCCAGTGTCATTGTTATCATTCTTCCTTAGACAAAACAGTAACTTTGATACGATGTGGACACATAAGTCTTGTTAACGAGAATTTTAGGAGATGATAGAGGGAAAAAAGGTAAATATCCCAAGTAATACAATTTTGAATACTATAGAAAACACgagattttcatgcattaatcTACAGCCCCCTACAATGAGGTCTGAAATGTAAAGGCTTTACCAACAGTAActacaaaa-aaatt----gttttaatctcTATGTGACTTTAAGTACAT----AGCTGAAACAGTGAGTTTCTGAAAGATTGGACAAAATTTGACATACCATAGTGTAGAGATCATGACCTAAAGTCCAACTGCCCCGAAGCCAAATGTGTTTGTGTTCTCATTTGCAGAAG----------------------------------------------------GCAGAAATCAATCAACTCATTCATGTCTTACATGCATTCAAGCTGTAGATTGAAAAGTTATCAGTGATTTGCTGGTTTGTACAGTGAGGTCCCTTCTTCTTTCACTGTTTGTAATTCAAGCACTGCTTTTCAGTATTTTAGGT---------------AAAATG-ATTTGATTAAAAT-ATCttctattatttgtattttaaaaacaccagGTGATATTTTCCTTATGATGCCT--------TAAAGCTTTACATTGTTTGAGAA

a score=76777
s chr3           147906797 2925 + 160039680 CTTCATTCACCTCTAAAAACGCCTGTTTCCAAA---AGGCAC----TAACATCACAGGCTGAGTTTTTAATGCAGATTTGTGGAATTCATTCCACGGCAGAGATTAAGGGGGAAGAAGC-------AGATCACATGGGGCCTCATAGATCATTGGAAATTGTTTTCCAGAGGTTCTTTGGAACTCTTTGCACAAGAGAGTGTTATGATTCTGTTTTATAAGAGGGCATAGCA-TCTTTCTTCCCtttattttt---atttatttatttttttttGTTTTGGTGTTTCACTTAGGCTTGAAATGGTTTGAGACCAAAGCTAAGAAAAT--ACTTGAGTCTCCAATGTCAACTTTGAATACTGGTTTTGAATATAATTGGAATAATTTGCCTGAATTTATTAATTGAATTCTGTATCACAAACCTTGGAATTAAAACTTCCTTA--TTTAACATGCAAATCTATGCAGAAACATGCAAAACACTATTCATAAAGCAACTGAAACATACCTTCAGGCTTTCCTATAGGGGGTCAAAGCAGGAAGATGGGATGCAAGGAACATAAATTCTTTAAAGAGAGTTTTTGCTTGACCTAGTAGAAGAAGATATATACTGAATGTAAGTCCGTAAACTGGCTAGTTAAGCCAAACATGGAATAAAGAAGATTT----CGATTTAATTACACAAATTCCTACTGCGTACTTCTAAAGTATACTAATGAGCTAATAGCTAATATGTAAAGATGTCTAACTGCCACTATGGAAAAACTGTTCTGCATATATATGCCAAGGGTTTTTGGCAGAGAACACTTCCATTTAACCAGAAATTATCCTGCCCAATACAAAAATCTAATTTAATCTTTGTTTAATGTCATCAAGATAGGATGAGTGGATGCGGGGAGCATTTGGAAGCAGTTAGAGTTTATGTATTGACATTATCATCAAGGCTAAGTTAATCGTTACAATTCTATAA-TATGCATTATTTCAAGATTCTGCTAATAACCAAAATATGATTAGTATTATTATTATGGGCTCAGACTG------TTGCACTATAAGCTCATTGA------TATCATATCAAACATTCCACCCAGTGAACACCTATAACATATTGACAAGGGCCCTAGGACCATCATTTGTGTATGGGTTCAGAGAGAACCTTTAAATTCATCCAGGATATATTTTCATTGCACAGATGAAGAACAGGTCTCAATTTGGGAGTGGTCACCTAGTGGAATGTGAAATCAAGAAGATTTGTTCTTAAACAGATGTAATGGCTTCATCTCTAGATATCCATTCACCTACCAAATTGGTCAAACAAATGAACAGTTGCTTTTAAAGTTGGTTTCTACACCAT---AGGGCTAACTCTGAAATAAACTCTTCCCTCTAAGCTTTACCAGTATAGTTCAGATCCAAGCCTGTG--TAACAG---CAACCATTTCTCAAGATGCACAGACTATCTATATTTGTGCATGCTAGTTAGGCCTGCACACTATTTTCTTGGTGTATGTTTTTAGATTATATAAGAAAGGCCATATGACCTTATATCCCATTTTAAAAACATTTCCCAAATCATTGTTCAAGGTCACAGGAGAAAGATATTCAACTTTTAAGTAATAACTAGCATCTATGTATAAATTTCTTGAAATAGGAGAATTTCATAGAGGAGAGATCTGTATTCTTTATCTTCTCTAGCTGTTATTATCAAGAGAAAACTTAAAGAACAAAAGAAAAACAGGATAGCAGTGACCTTCGTTATGACCCCATGCACCC-AGACCTCATTGCTTTACTGCAATCAACTCTGATGGTCACAGTTATAAGGTGCTGATGGCTTTAAAATGCCA-TGAGTTATAACCCAGAAACAACATGAACCAGAAAAAGCAGCAAAGCTGACCCGACAAAGA--GATATAAAATTAGCAATGGACCAGAGATAACTTTATGCCAGTTGCTAAGGGCAACCTACAACTGATGGATAATGTAATAACGCACGTTAAGCCACAGTTACACTAAATAAGTTCACAACATCATTAATATCTGTAACAGCAGGGGCACCATGCTGACTGAGGCAAGCATAGGTGTTGATGATGACTGTACCTTTGGGAAAGACCTAGCCACATAATGACCTGCTAGGATGCAAAGAGG---AGGGGTAAGGACAGTGTGATATCAGCAGCGTTTGTCCTGCCTTTTAACAAACGGCCCCTCCAACTCCATTCCTCTCCGCTGCAGCTTTACTCCACGTGTGCTTTCCACTGAAGGTAACAAAAATACATCTAATTCTACGATCTCATGG---TAGAATCTGAAGTCAGGAAGC-CTTAATTTCTTGCAGGAACTGATCACACATCCCCACACAAGGACCGTGTCTCTAGTTTACCTGCTCTT---AGTTTTACTTCCCTTTCATT-----------CAAAATGTGTATATATAAAAAAAAGCTT-CATTCACAAAAC-CTTACCTGT---------TTGATTTAAATGGCATAAACTGTGTGACAAAATATGTATAAATTGTCTATACATGAACTATATCTATAGAAAAACATCAGGATGGCTACCGGGAGTCCTTTTGAAATGTCCACACTTTGTTTCTAGGTTGCTGGCAGTAGGGCTAACTAAG-CATTTCATACAACAGGTCAGCGCTGAAGCTGCCCTCTCCCTTAGATATCTTTACAATGATCTCCTTAGGGAGCATTTGACATAAATGTGAGAAATGATGCAAGGTAGACAGAGTCCTTCTGATTAAGA--CCTTCACCAGAAAGGGTGGTTCAAACAGGACCATTTCACTGCCCATGTCAGGCAGATTCCGTAGTGGGGAACATAGTCAGTCTAGGTGCGACATTCTAGTCTCCTCTGTTGAAACT-----CTATCACGTAGCCATTCAGTATTTTACAGAGTTGAATCGACAAAAGTGATATCACAAAACCAGAAAG-------AGAAAACTTAAGGTCCTTCAGCATCACAGAGCCAAGCCTCT--CTTTGTATTTGAAAAT
s HiC_scaffold_1 134618054 2821 + 233722169 CCTTAATTACCTCTAAAATGATctatctccaaatacagtcacattaTGTCATCAATGTACGAATTTT------AGAAAGATACAATTCGTTGCCTAGCAGACATCAAGGAGGTAATATCTGGGGAAAGATCACAATGGGTCTTACAGATCACTGGAAAGATGTGGATAGATTATCTCTGGAATTCTTTACA-AAGGGGGT-TTATGATTCTGTGTTAGATCAGCGcatagaaatttttctttccattatttcGGGAATTTATC-------------------------CTACGgctaaaaa------gagacaaaagttaAGGTACCCAAGTTGAGCCCCAGGTGTCAACTTTGAGTACTGGTTTAGAATATAGTCAGAATCATCTGCCTGATTTTATGAATTGA-TTCTGTATTCCAAACCTTAGAACTAAAACTCCTAAAAATTTCACATGCAAATCGATGTAGAACTGTGCAAAACAGAATTCATAAAGCAACTCAAATGTGTGTTTAGGCTTTACTATAGGGG-TCAAAGCAAGAAAATGGAAGCCAAGGGACATAAATTCTTTAAGAAGAGTTTTCGTATTAT------GCCAAAATTATATACTAAATGTATGCTGCTCAACTGGCTAGTTAAACTAAAAACAGATTGT----GATTTTACTCAATTTAATTACACCAATGCTTACTGCATGCTTCTAAAGTATACTAATGGGTTAATAGATAATATACAAAGATGTCTAGTTGCCCCTATGAATAAACTATTCAGCACATATATGCCAAGG-CTTTCACTAGGGCTCCCTTCCATTTAACCTGAAGTCAGTTTGCCCAGTAAAAGAAGCTAATTCAGTCTTCTTTCAGTGTCATTAACAAAAAATAAGGGGATCC---------TTAGAAGTAGTTACAGTC-ATACTGTGA----ATTATCAAGCCTGAATTAATTGTAAAAATGTTATAAGCAAGTATTGTTTCAG---TCTTCTAATAg--------tgactattattattattagcgaTTCACAGGGGTTTATCTCCAAACCAAATTCTTTAGATAAATTGTACTACCAAATATTCTATCCAGGGCAAGCCTATGAA-----GAAAAGG---CTATG----TCATTT------------AATCAAGACCTTAAAGGTCAGTCA---TCTAACTTCCTTTTACAGATGGAGGAAG-----CTACCTGGAAA-GGTTAAAAAATGGCATGTGGAATAGACTTTATTTGCTTTCCTATACATTTCA-AGTTTCTTCTTGAATAGTTC---------CAAACCTAGTCGAACAAACCATTAAT-ACTTTTGCATATGACTTCTGCATCATCATAGGACTCACATTAAAA-GTACTCTTTT-TGTAAACTTCatcaataaagtgaaaatttCAACCTTAGATTAAAGGGattaacattttctaaaaata--------ataaaagtttccCTTTGCTAGTTAGGTCTCTAAGCTatttaattaatgtattttttaaactcaCACAAAGAAGACCATATGACCTTCTATCCTATTTCAGACACATTGTCTAAATCTGCCTTGAAACCTATAGAAGAATGacagctgaattttaaaaaat---cagcattaGTTCATGTATTTCTCCAAATGTGGAAAATGCATGTAGTAGA--CTTGCATTGTTTATCTATACTAGACTGTATTACCAAGAGAATACTTAAAGAATAAGAGAGAA---GGAGACCAGAAATCTTTGTGATAGTCCTGTGTACCTTGGGTGTCATTGTTTTACTGCAATCAGTGTATATAGTCACAGTTATAAGGTGCC-----TCTTACAACACTGCTGAGATGTAATCCAGAAGTAATATgaa-------aattaccaaagctgacCCAATAAAGATAGATACAAAATTAGCAGTGGTGTACAGATAACTTTATGCCAGTTGCTAAAG-CAACGTACAACTGATGGATAATGTAATAATGCACATTAACCCACACTTACACTAAATAAGTTCACAACATCATTAATATCTGTAGCAGCAGGGGCACTAAGCTGGCTGAGATAAACAAAGGTGTGGATGATGACCATACCTTAGGGAAAGTCCTAA-CACTTTATGACCTGA------ACAAAGTAGGACAGGGGAGAGGACA--CTGATtccagcttaatttgttccagctTTTAACAAACAGCTCCTGTAATTCTGTTTCATTACACAGCTGCTATATTTTACACACCTCTCTTCTTGAAAGTAATAGATATGTctctgtttttataat-ttatgGCCATAGATTCTTATGTCAGTGATCTTTTCACTTCTAATAGGTCATGATAATTCATCTTCACACAAGGACTGCGTCTttggtatacttttttttttaatttttatttctttttcattttgcttccttCTCAAACATG-----GTGAAAACCAGCTTCCATTAACCAGACACTTGCTTGTGTTCTCTGATCCATTGGGGTggagagacaggaaggaggagagaagcaC----------------ACCCACCTCTAGACAAAATTGTGAAGGCAGCTACC----TCCCTTTTGAAATTCATCAAtctggtttccaggcaaccagcTATGTAGCTAATTAAACCACCTACTATGATATTCCAA-ATTCGAGCT------TTCTTTAAATGTTCTCATCAATATCTCCATAAAGGCCAGCTGATAATAATTTGGAAGTTGTTGCTAATTAGTTTGAGTCCTTCTGAGAGAAAATACTTGGTGAGAAAGAGCGattcaaa-agataaattttaggcCTCAT----GACATATTCTGCA-TATAAAACAGAGATA-TCTTGATTCTGGGTT-TAGTTTCCTTGAATTCAAATATTTCTTATCAGGCAGCAGCTC--TGTCTTGTAGAGCTGATTCAACATATTGAAATCCATAGGTTCAGAGAGTGGTTTTAGAGTTCTCAAGGGTGTGCAACATCACTTAGTCAATATGCTTATTTTGTATTTGACAAT

a score=59333
s chr3           147912322 1893 + 160039680 TGGAAGGAGAA--TGGATGGGTACTGTGGAAATGTTGCTTCACAGTAGAAATCATTTTGATTCACAGAAGATTATAATGAGACCATCTATTATATCAGTTTGTCCACTGATTCGCTTAATATTAACATGAGCTCCACTGTAAATTACCTTAACACTCATTTTATAAATCTCCATCTGAGTACTACTCAGAGTCCTGCACCTGATTTG----------------CCTTCCAGTATCGTTCGCGTCTTTAATCAGTCTGTTAATATAGGTGCCTCAGACTTTTAGCTTCAGCCAATTACTTATAAGAAAGTTGGTAGACTGCCTCACTTAAGACTGAATAATAGTGCCAGGGCAGATACATTAAATCTCAAGCTTCTTAAGCCAGCTGCTTCATTACGAGGTAAGTGTGAAACTGATATTTCTAA--GAGCACTCTTTTCTGGAGGTCTTCCATCAACTGGGATATACGCCAGAGTAATACCCTCATAACGGAAGAAATACAGCGGACAAGACACAATGTAGGGAAGAAAGAAAAGACACTCATCTGAGGTTATTTTCCACAATCCAAGTGAATCTCTTGATAGTCACCCAAAACTAAGCCTACATTCACATGCTTCAGAAAAGGAGGGATTATGAGGCTGTAAAAAGGGATATGAGGACTATATGAACCCAGCTTTGCAGAGGG---GAGGAGGAAATGGCT----ATAAGAACCCAGATTTGCGAGGGGAGAAGAGAATGGCAAAGAACAGGGCACCCATGACAACAGATAAAGAGAAGTCAGAACATACAATGAAAATGAACTTACTACTTGTTTTCAGGTGACTCA--TATTAAAAATAGAC--AGAACACATCACTGTGCTGTGAGTCTAACATAAGGCTAGACAT-CATAGGCAGTCCAGATGGAGATCAAACAGATGAAGAAGA---------------------------------AGCAGCAGCTCATGAATAGGGGATGGGATGCATTCATGAGCT-GGAGGGACACACACTAACAGAA-------TACATGTGCTCCTATTCAGAGAATAGAGGGCA----GAGTGTGGTCAACTCTTAAAGGCT---------------TTTGCTTACAGGCTGGCTAAAGGGGTTTCCCT-GTGCTTAATTGGTTGCTTAGGACACAGTTG-TGGTACACTGTAAGAATTAGCATTTATTAACGGAAACAGCTGGATCACTTGGTAGACAGGACTTGAAGACTCTGAATAC--------------ACCAAGCAAATCTGTTTTAAATACTAGATAAACAA-CTTTCCTC---ACCACA----------TCGTTTCTTTGTTTCTTGAGTTCCCACATTCATTGAAATGTGAGATGATAAATGGCCATCTAAACTGTATCTTAATTTTGCATGTTTCATATTTGTCTTCCCCGTTACAAAGGATGTGAATAAAACTGGAAATTGTATTTCTGTTAGGGTTCCATTCATTCTAACAGTTGCTAATACTGCTCAACAGATCAAACAGTattttcctacttattaaatataggaagtaaattttat-tacaaagtctgcatgaaatgag---gattgtcatttccaattaatacatagctcat-aagaatataacttattggtaaaacgttactggaatcattaataatctgattc-----ttttgtttgctttaaaaatgtatgtgctg------------------------------------------------------------------------------------------------------aggaaaaaaagt------------------------------------cctataaataaatagatgtgacttgaaggagttttgtcatggcaacatcactcaacgctttgaacattttctgaggt-acatgtcaaaaattacatc-gtggtctattattat-tttaatgatcagtcagctgacaactcaattaggtctttctttgattttgttgagtgcaatgaatgattcaatagatgcttgttatgcaggcttcagagtctctcact----------ttGAGGAAAGCGCTTACTAATGTGGATTAAAATTTCTTAGACCAGTTCTTGCACTC-----AGGTACTTTATCTGTTCTAAC------AATTTCAAAAG
s HiC_scaffold_1 134622884 2098 + 233722169 TGGAGGGGGCAGGTAAATGAGCTCTGTGAAAATTTTGCAACATAATGTAAATCTTTTTGAT--ACAGTAGATCATAATGAGAGCATCTATTGAATCAGTTTG-----------ATTCAATACAATGATGAGCTC-ACTGTAAATTAATTTAACACTCATTGTGTAAATTTCAACCCTACCAATATTCAGAGTAATGAATATGACTTTGGCTAAAAGAACTACCCCTTCCAGTACCAATAATATCTCTAGTCAGTCTGTTAATGTAGGCTCCTCTGACGTCTACTTTCAGCCAATTACTGAAAGGGAAGTTGGTGCAGTGTCTCACTTAAGTCTGAATAATAGTGCTGGGGCAGATAATTTAGATCTAAAGCTTCTTAAGCCAGCTGCTTCATTAAGAGGTAAGCCAGtaactgatatttttaatttaacactCTTTTCTGGAGATCCTCCATCAACTGGGATATGTGCCAGAATAAAACCCTCATAAAGAAATGAGTAGAACAGGCCTGAAACTGTGtagtgaagaaataaaaggaattgatCTGGGGTTATTTTGCACAGTCCAAATGATTCACTTGGTAATCATCCAGTGCTAAACTTAAATTCACATGCTTT-GAAAAGAAGGGATTAAGAGAATGTAAAAGGGGATAGGAGGGTTA-GTAAATTCA----TGTAGACAGCAAAAGGGGGAGATGGCTGACAATAAGAC-----ATTCACTGAGGGAAAGAAGGATAAGAAGAAATTGGA-------------AGGTATTTATGTGTGGGAGCACAGA----------------TGGTTG--TTCAGATGACTCATCTATTAAGAGTATATTGAGGACACATTGTCATTCTCTGC-CCCATCCTAGTGCTGGACACATGTAGGTGATGTAGATGGAGATAAAAcaattgaagagaaaaacaatttattaaTACAAGATGggatgaagagaaaaacaatttattaaTACAAGATGGGATTCATGAATGTGCTCTGGTCAATACACATAAACAGAAACATAATCACATA-ATTATCATTCAGAGAAGACAGAATAATATGAGTAgatttaaatctctctctctctttctctctctctctttccttatgTACTTGCTAAAACACTTTTCATCATGTTTAATTGGTTGCATAGAATACAATTTCTGGTATATTGTAAGAATTAGCATTCATTAAAAGAAACAGCTGGGTCATTTTGTAGAAAGTATTCAAAAAATCTAAATACCATGGCAATCTAATACCaaacaaatctattttaaaagttacataaatAAGCTCTTCTCTGATTCAGAAACTTTGTATTAGTTTTTCTGTTCCTTGAATtcctattttcatt--------------ttgattaccAAGAAAGTGGTACATTAATATAGCCTATTTTATGTTTGCTTTCCCTGTCACAAA-AATATGAatccacat-----ttttatttctattacatttcTCTTAACTCTAACAGTTATGAATCTGACTCACCAAATCACACCATATGGTATTACTTATTACGGATAAAAGACAACTATTAGAAACAATTTCTAAATGTTATAAGTTCGGTTACCCTTTTCAATTAGTATGCATATCATAAAAAATGCAACTCATTGGTAAAATAGTACTGGAATCACTATTAATCTTATTCCTATTTCTTGCttgctttaaaaatctatatGCTGATGCAGGGCTCCATGGATCACTTCTGAAATCTTAGCACTCAGACTAAGCAGGAAAATTCTAAATTCATAAGGCAACTAAGGGAGACTCTGgtctcaaaattaaggaaaaaattttaaataatacaaatatacacactgagaaaaattttctctataaataaa---acataactagaagaatttttttcttggtaacaACACTCAATTCTTTGAACATTTTACAAGGTGACATGTCAAAAATTACATTGGTAGTCTTTTGTCATATTTAATGATCAATCAGCAAACAACTCAATCAggtctttctttgattttgttgaaTGGAATGTATAAATTTA-AAACGCTTGTT----AGTCATTAGAAATTTTTACTTTCACTGTTATTCAGAAAAAGATTTACTaacaaaaatt---attctttaaaccCATTCCTTTTCTAGTTGGAGATAGCTTATCTGACCtgatacacaaaatttaaaaag

a score=117951
s chr3           147916169 4724 + 160039680 [encoded data, 5036 characters]
s HiC_scaffold_1 134627459 4416 + 233722169 [encoded data, 5036 characters]

a score=26930
s chr3           147923429 1276 + 160039680 TCAGAGGTGTAGTTATTTTGTCCACAGGCACTCAGG---TAGGAAATATTTCTAATAAGAATATTTTCATGGAATGTCTGGCAATACTTGGG-----GTTTGACTTAATAATGTAAATGTAGACAAGTCTATGGTGCATCTTG--CTGGCCCTGGTTGAAAT-------ACAAGTGAGGAGGAAACCTGCTAAAGAGTTGAGACAATTTCCTCGGAAG-----------TCTGTCCTGGTCATTCACTGAGAATCTA---ACCTATTGTGTCAAAGACTCGTCCTTGCTG-CTTCTGTGTCTGCAAATATATATTAA-AAGAAGGTTTCTTTTTAGGAGAACATTTCTCAGATTCGCAGATACTGAC------------------------TTGGAGATTCTCTTGCTCATGAAAAGGTGTTTACCACTATCCTTGGCATCCAGTTATTTAACGTTCACAGTTTCTAAACGTTCCGCCTCCAAACCGTGGCTGACAAAATACTTATCCTAGGATGGACCAGCATCTCCTCTAATTCTAAGACGGACTTCAGTCTGCTGCTCCAGTCAAGATTCCCTGCTTTAGACACAAGATTTGAATCTTCCCTCCCCCTCTTCTTGCTTCTCTATTGGTTTGAAGGCAGACGTGATGCCTACCACCAACACAGCCATCAGAGAACACCCTTGGGTAGCCAAATGTTGCAAATACTAAAGTGATTCTATTCCTTGACTGCAAGACCTGGAACACTTCCATCTCCACCATAGGTATAAGAGAAAGATGCATCCCCGTCTTGTTTCTATTACCACATCTACTTGCTGCTCTGGAATACCAAGTGCATCTTTCTCCTAATGCAC----------AGTTGCCGGGAAAGTTGCTTTGGCAGAGTCGGTAAGTTGTACGCACACTGCCTGCTGCCTTAGAATCCTGTGCTTCTGTT---------------TTCCCTTTGTTATCCAGAACATGCCTTTTGTGATGTAGCCTGTCCCCAAAGAAACAGTTCTTACCCTGAAATTCAGTGCTTGATTCTTCAGTAAATAAATTCTGTGTTTGGTGCTGTTCTAACAACCCAAATGGAAGTTTCTGTGGTAAACATTTGTTTCACAAGCAAACACATATGAATCGAAATGTTTCTTTTCATTGTTGTGGGCCAATATCCATTTGCTTCCAGGCCATTAGGGACTGCTGAACAGCTTTTGTGAATGTTTCTACAGGCAGCTGGCCACTCCAGTC----------TCGCCCATTGCCCAGGAGTTTCC--ATTGTTCAGGCACTCCTCGGGGACAT--------GTTACCTGTCTGGTAAAAACTGAGTGAATGCCAAAACTACCCTGCACCTAATGCAGTTAGGA
s HiC_scaffold_1 134633154 1265 + 233722169 TCCAAGTTGTGGTTGACTTGCCAA--GGTATTCAGCAGCTTAGAAATGTTTCTCACTGGAACGTTTGCAGGGTATATTCAGTGATGATTAGACACATTTTTGATT----GTTATAAATGAAGAACAGCCT--GGAAAAATTTAACCTGGCCCTAGATAACATTTTATTGATAAACAAGAAGGAGACCAA-----------AGGCAATCTCTGCCAGAGATAATAATCGTTCATGCCAGGCGAATCTCTGGAACCCTGTTGGACTGTAGTGGAAAAG----GTCTTTGCCAACTTCTATACATACAAATCTGTACCAATCAGAAGCTTTCACTTTAGTATAACATTTCTCAAACTCAGCAATACTCACGTGTTAGGGAAAATAATTCCTCACTTGTGGGCTATCCTGATCATGATAAGATATTTCCCACCATCCCTGGCTTATGTCTTCTAAATGTGAATAGTGTTGTAACTCTCTTCCCTGGAGTCATGGCAAACAAAAGTTTCTTTGAGGGAGGGA----------------------------------------------------AACCACTGCTTTAGAAAGAAG-TCTAAGGCTTCTCTCAA----TTCTTCCTTTTCCATAGGCTTAAAGGCAGATACAATGTCTACTGCCATAGCTGT--TCAGAAACCACTCTTTGGAAGCCAAATGTTCTGCATGCTGAAGC----CTCATCCTTGACCACAAGGCCTGACCCACTCACACCTAAACT---GGTATAAGAATGAG------------CATGTTTAAATCATGCTATTTTGGAGTT-CTCTGTAATTGTAGCTGGATTTTTATGCTAACTCATGACATACAGTAGCTACTGGGAA--CCACTTTTATAGAGCTTATAAGTGTTACACAGTCTGCCTG-----TTAAATTCTTGTAGttctgttgccttttttttttttttttttttgttatgcgGCACATCATCCTTACAATATAGCTTGTCCCCAAAGAGGCAGTACTTACAATGAGAAGCTGTGCTTGATTCTTCAGTAAATACATGCTTTATTTTACCATGTTCTAGAAACCTGAATGGAGGTTGCCCTTGTAAACATTTGTTTCACAAGCAAACACATCCAaattgaaatgtttcttttcacaGTGGTAGAGAAATATCCATTTGTGTTCACGCCATGAGGGACTGCAGAAT-GCTTTTGTAAATGTTTCCTAGGGCTGCTGGTCACTCCAGGCCAATCTCTCACCACCCACCACCCACACAtttccttaaaaggaaagaacttcCAGGAAACACAGCCAAGAGTTCAGGGGTTGCCAGGG---GGGTGATCACCAAAATGATCCTGCATCCGAAGCAGTTCAGA

a score=87612
s chr3           147928102 3434 + 160039680 CTAATACTTCCTTTATTTCC----------TTTG-GCTTTTTTTTCTTGTTT-CATGTTGTAATGCTGAATTAATTAATTGAGATTAATGTAATgaaattaatctcacagcctccaagattctaggcaagaactctacctctaagctacatttccaacctcAAGTTTTGCATGATATGGAGGTACTTAGTGGTCTCAGAAAGAACTTTAGGCTTTGTTTAAGCTCTTAT-----------ATTAATG-----ATATTAA-GATATGCAAGA-TGAATACAGACCTTTAGAAGCAAAACGGATCAGGTGCACACCCACACTGAAACTGGGGGAAGTTCTTGATTACTGATGCTACATTGAAAGTGAGCTTGCCACTGATCTGCTAAGAGTGTCATTCATGACTCAAACTTTGTACCTTCATTCAAATCTATTA--TATCATTAGTCATAATAATGTCTACTTTTT-----------ATTCAAAGCAATGGGATTTTTAAACACAAATA----TTACAGATATATTACACCACACAACAATGTTTAAC-CAATACATTTTCACAAAGGACAAATAAAAGGATAAATAAAATA-AGCTTTGTGTTTCTTTCACATAAAAATTGTATCACCATGGGGAAACCCCA--TGGTGAGCCAACTATTTTCTC---AACTCATAAACTTCCAAAGTTGCTCCTGAAGCCAGAACTGCCCAAGTGGTGGGAAGAGAAAGAAAGAGAGCTTGTGACAAGCACACTTAAAGAAATATCTGTGGAACTGCATTTAACATATCTACATTGGAACATACATATTGTTCAGAAAGCCAGGAAGGCCTAACCAAGGTCCAAAACAGGACATAAATA--GTCTATATGTTCTACTACTAA-------ATAAAAAATAGAAGGGTAGATGTAGAAAGTCTGTCCATAATGATAGTAGCTGCCATAACTATGTGACTACTAGTGTCT--GAGCTGCTTATCCAAGGACTTTTGGTGACAATGATTGATAAAGGAAATTTCCATGTCTACTATGGAAGGTGACCAG-CACGTATTTTGTTACTAAACATTGCTATAATTATGAAGTCAGCACCT----------------------TTTGCTTTCTATCTC-----------------------TATAGAATGTCTGTGCAATGCAGCAACACACGTATAATAGTTT--GTTAAACTGAA--------------CCCCGCTAAGTTTAAAAG-----TTATGAAATTTCTCAGTGAAGTATATCAATACCTTCATGCTTGGGAGGGAAAAGCAATGGAGATGAAAttattatttccacatgaagtgttttccctatactcatgcacttggacctctgagacttagagctctttgagggggatgttgaatttgggggacatggcgtctacctggcaaacacaggacatgagatgctggctttgaacgtggcatcaatttctgattatgaatcagcgatttgcttcatgatcctccaagatactagcaagtcattttccaaaatctcccatcatgccttctacgcatctgaaactcaactcaaacaagcctaccctagc-ttaagtagttttttctcaggtgatttatcatagcaacaagaaaagGAGCAATACAGAGGGTACCCGGGGTGGGTTGACTTTACCATTCACATTTGTGAAGTGTCTGTCCCTGTGATTACACGGCCTTCGGACAAACCCATCCATAATTGAAAAAACCTGAACCACT-GATTGTTTGTTTTGGTTACTAGGAAACTCAG--TACACTCTGCAGCCTAGTTTTATAAATTTATAGG-CAAGTGTGCTAAGTCTTTCTTGTTTATTATCTGCACTATTTCCTTCATTCTGATTTATTGAAATTT-TATATGATTTTTTTCTATTTCAAATA--GGAATGGTGTATGCTTAAAAACACAAACAAGTGTTGAGGTTTATACCACTGTATGGC----------CCTGCTACCTGCATTCCATTATAATTGCCCATGGAATTAAACAGACATGAAGAGAGCAGTTTTTGCTTCAAGTGAGAATCACTTTAACTTCTGAAATGATAGGAGACACATGAATGAGT----TTTCTCCCTTACAAAAAGACATAAATGGAAAGTTGTAAGTCATTGAGCTGAGAACTTA-TCCATGCCCTCAGAACA-------TCCATTTACCTTTCTCATCCTTGGGAGAAGGTAGGGCTCACATGCCTCACTGTATTTCTA-----TCTGCAGACTGG---GGATTCCGCTTACGAGAAAGAAGTGAAATGCCTGTCATAACTCTCCTAATGTTGAACTGTGAGGGTTACAAACATGAACCCC---------AAATGTGAGCCTCACAATACAGGTTTTAACACATTTGT---TAAAGAGGTACCTGTACCTCCGGCTAACACTAAACAAATTTGTATTGACCATGTGGGTCTTTGTCATGGGTGAAACCAGTTGAGGCCTTTGG-AATGGTAGATAATCAATTTAGTCTAATTAAACACAGTTCACATCTTAAATTATGCAAAATACAAGGACTCAAGAGTCAAAGCTTAGGTAGA-TAGAGACCGGAAGGCGCTCTGCT-GTTAAGCCATAGAGAGCTGTAGGGAGACAAAGCTATTGGGATGTGATTCTTTGCTGAATAGCTTTGAGAAATTCTGCTTACTTAGAAGCAAATGATGATTCATGCTGCTAAACTC-AAAGAAGAAAAATAGTTTAATGATTTAGATTACAGACATCAGTATTaaaaaagaaaaaaagaaaaaaaaaaaaCAACCTGAAACATAAAGCCCCTTCAGTCGATAACAGGACAGTTTTGTAAACCACTTAAGGCTGTGATAAAATCCTACTTGACTGGCCCACGAGCAGATGTGACAAGTTGAATTTATTTCCTCGCTTACCAGGAAGCTTTGCAGGAAACCCTTAACATATGGTGCCTTTCGCTTCCATCTAGAGCTATAAATGTTATTGGAGAAGGACATTCCCAAGAGCAGTGAGTTTCTGACGGCTCTGCCAAATGGAGTCCAAATGATCCTTCTGTGGTTCTGAATTCCCTGAGTTCTTAAGAGTTGGCAACCCAGGGTCTCTGATCTAAACACAACTCACTGATTTAATTATTTCATTATAGATTTGTGGAAGCTCTTTCAGACCAGTGACTTAGCATCTGCATTGTATCTAGCTGTACAGGAAACGCAAGTTAGAATGATGTAAATATTTTGTTTCTTAGCTGCTTTCATTTGAAAACTTGGACGTCACTTCACATGGAAAACAAG--------------CACAAAAGAATGTGAAATCGAGATAAGTCAAATTTGCAGGAAATTTTCTCATTTGCAGGGCCTTACATGTTGTTTCTGTGTTAGATGTAGATACAGCATGTATCAATACATGATGGGGGAG--------------AGTGTTGTGTAATCATGCAGAAGTGAGATATTTTT-AGTAATAGCAACTGACTATCTTATGTATATCTCAGTAGACATGATG----GCTGAGTATGT-----AGGGTACAAACTTGCTTAGTGCCTCTCTGAAACATTTTATCTTAATAGAGTAAAGGGTCAAAAATTGATGCTTTGA-CATTAGAAAGAAGCTGCTACTTGAGGCAGCA
s HiC_scaffold_1 134638577 3272 + 233722169 CTAGTGATTCCTTTGTGTTCAGACACaagctttgtgttgtttttgattGTTTATTTGTTGTGATGCTGAG------------GATTAAGCCAG-------AATCTCACAAACAGCA--------GACAATTTCTCTATCACTGG-------TCCTTACCT----TTATGACTGATATA--------TTGTCCCTTCTGAAGGATCCCCAGCTTTTGCTTAAAGTGCTGTTTTCTAGGATGATTAAAGGTGAAATAGTAACAAAATGCAGGAGTGAA-----------AGGAGCAAAGAGTAGCATAGGAATAC--ATAttgaaacaatagaaaattaTGGCAAACCCTTGCCTCTTTGAACCTCAGCTTGCCAGTGAACCAGGATGAGTCTTATTTATATTGCAAACTTTT--cttctattaaattttattaaatatctcaTGCCAcagcagtttttcttcttttcaattctCTAGTTCAGAGGGATGAG-TCTATAAACACAGATGAAAGTAACACTGATGTTAGAGTA------AATGTTTAATGCCTTAAAAGTACACTAAAGTCAGA----ATACTACATAAAAtagagttttatttctttctcaccTAA-----GTCTCGGGATGTGTAATACATGGTTGGTGGCGTAACCCTTTTATCTGCAACACG-GGGCTACCAGTATTGTTTCAGgaatctccattttatagacattagaaagagatgaaaagataGCACATAACA----CATAGAAAGAGACAATTAAGAAGTTGTATATATCACTTCTGTTTC----CAT-CATCCTGATCAGAAAG---GTCAAATCTAGCTAA------AAAGTTGACAAAAATATAGTCTGTAGATTTTAATGctaataaggaagaaaaaaatagaagggcTCAAG-------------------------------CATAAGGACATGATTACTAATGTCCTCGAGTCTCCTTTATAGGAAAAATTTATGTCAATAACTGATAGTAGGAAGTTCCTTGGGTATTGTGGGAGGGCATCTGTCACAGATTTTGTTAGTGAACATTGCCACTGTTATGAAACTTGTACCTCTCTAATAATACAACTACTGGTTTTGCTTCCTGTTTCATGACTATCAATATGAACATGCTCCTAGAAT---TGTACAATGCAGCAATACCAGTAagctaatttttattaaattaattttgtttttacattcacAATTGGTATTAAATGACAGTTCAGGAAATAGCTCAAAGAAATATGTCAGTatcttcatggtt--------------------------ttttttttt------------ttttttttggtctttttcatttttatc---------------------------------agtaccggggat---------------cgaactcacgac------tgcctgcttgcaaggagg----------tgcttatgcagctgagcta--------aatcctc--------------------------agcccctctccaTGCTTT---------TGGAG--------AAGCAAGTTGAGGTTAGTATTAAGATG--------AAGTTGACTTACTCTTTTAATA----------CTCCACAAAAATTCTTCTGAGAAACTTTTCCTAGGTCTCAGTGTtggtaaaatttt-------------------ctttctgacaATTTCTTCTCCA---GAAAAAATGTTAATCATTTAACCATTTGTTTTGGTTACTAGGAAACTCAGAGCATACTCTAAAGCCTACTTTCATAAATGTATAGAACAGGTGTGTCAATTTGTTCTCTTTTAAT-TCTACATTATTT-----ATCTTCACTCATTTAAATTTGTGTATG---TTTCTGTAATTCAGCCCATGGGATGATAtgtttatataaacataaa----tgcTGAAAATTTCATCACTGTACAGCACTCTGAAATTCTGTTACATTCTAAACTATATAATCGTTTACAGAAT-AGACATATTTGAAGGCaacaatttttactttaa---agcatC--TTCAAATTCTTAAATGATAAGAAATGTATTAATAAGTATGATTATTCCCCTacaaaaagacataaatgtgAAACTGCAAATCGGCTAATTAAGAACTTAGTTTACTGTTTATAAACAACTGCTATCAATTTCACTTGTGCTTAGCTAAGAAAAGGCAACACTTGCTTGTGGTACTATATCTCCAAGAGATTTGAAAGCTAAAAAGGATTTTGCTTATGATAGAAAACTGAAACGCCCGTAGTGACTCTAACCTTTTTTAATTATAAGAGC-AAAAAGATAGATCACTTTGGAGGGAAACTGGCAGCTCACAATGCAAGTTTTGAAGACCTTGCCTGTGATTACCTACCTATACCTCTGGC-------AGAAAAACCTCTTCTGACCCTGTGGGTCTTTGTTATGGTTTAAACCAATCGAGATTTTTTGTAATGGTGGATAATCAATTTACCCTGATTAAATGCAATTCTCTTCTTAAATTATGCAAAAAGTAAGGACTCTTGGGTTGAAGCTGAGGTAGAACCGACACCCGTAGGCATTCTGGTAGTTAAGCCTTGGACAGCTCTGGAGAGACAGTGCTATGGGAATGTGATTCTTAGCTGAATTGCTTTGAATAATTCTCCTTGCTTAGAAGCAAATGATGATGCATGCTGTTAAagtccaaagaagaaaaatagtttaatgATTTAGATTATGAACATCAGTATGAAAAAA------------------------CCTGAAATGTAAAGCCCCTTCAGTGGATAACAGGACAGTTTTGTAAACCACTTAAGGCTGTGATAAAATCCTCCTTGACTGGCCCACGAGCAGATGTGACAAGTTGAATTTATTTCCTCTCTTACCAGGAAGCTTTGCAGGAAACTCTTAACATATGGTGCTTTTCGCTTCCATCTAGAGCTATAAATGTTATTGGAAAAGGATGTTCCCAAGAGCAGCGAGTTTCTGACGTCTCTGCCAAATGGAGTCCAAATGATCCTTCTGTGGTTCTGAATTCCCCGAGTTCTTAGGAGTTGGCAACCAAGGGTCTCTGATCTAAACACAGCTcactaatttaattattttattatagattTGTGGAAGCTCTTTCAGACCAGTGACTTAGCATCTGTATTGTATCTAGCCATACAGGAAACACAAGTTAAGAGggtataaatattttgtttcttaactGCTTACATTTAAAAGCTTGCAATTCATTTCACACGAAAATCAGGCACCACAAATTGAACACAAAAGAATAGGAAATTGAGATAGGTCAAATTTGCAGAACATTTTCTTATGTTTAGAg-----------gtttttctatcttatacagATACAA-ATGTACCTCTGCATGGCAAAGCAGTAGTAAATGCTTATAGTGACTAGCAATCATACCAAAGTGAAATATTGCTAAGTAAAACTCATCGACTGTCTTATGAGTAGTTTATTAGACTCCACGAAGTGCTGAACATGCATCTGAGAGCACATCCTTACTTAATGTCTTTTTGAagcatttcattttaataaattaaaaggaC-AGAATTGATGCTTTGACCATTTGAAGTTTGCTGCTGGCAGGAGCAGCA

a score=13425
s chr3           147932878 663 + 160039680 TAAACACTAAAATTAGTTTTAGAAACACAACCCTCCTTTATCAATGGCATAGAAAAAAAAGA--GTTAAATGTGCCATGGCTAGCTTCTTATATATGCTACAAAGCAGATAAATGCTTAAGCTAAAGCTGGGGGTATTTATATAAACAACTGATTTTATTATTAATATGAAATGAAGATGAAAATATTCTGTAGTTTATTTTCTCAAA----CATTACTAGGATTGTTTTCTTTAAAGCCAAATTGGTGTTTTCTTAACAGCTCTACCAAGATACCAACCATAACATCACTCA----TTTAATCTTATG-TTCTAG---TTGTTTGTATT------GAGTCTAAAACTAATTATACATTCTCAAATTATTCAGAAGAAAAGTGACTTCAAATATGCCGTGGTTTGATATTCATCA-------------TGCCATGGTTAAATAATCAAAAATAACGTAACTTTTGACTGACATTACCATGTGGCCGAAGGCTAAATTTTAACTTATATAATTTTCTATTAAAAAGAGGGCATAGAGTC------TAAAATTAGATGTTGTTGCCATTAGCTTTTTCAAACTAAACATTTTCTAGACCAATGGCcatcatcatcatcatcaacatcatcTAGACCTACGAAGAGGTTTTGTGGGAATCTAACACAACGCCAC-AATTTTGTAGATGAGGCTAATGAGCTCAGAA
s HiC_scaffold_1 134642915 670 + 233722169 taactattaaaaatattttttgaagcaCAAATCTCCTACAGCAATGCCCAAGACAGAAAATACAATTTCAGATGCTAT--TTATCTGAACTTTTATGTCATTAAGCAAATGT-TTTTTAACCTCAG--TAAGGTTActtgcatataaaatatttttcatcattga-atgatacaaatataaaacCCTGCTACAGTTTATGTTTTCAAATGtgcattttcaaaattgttttctttcaaacaaaaaaaaagcagtttcaGTAAATCT--CACCATAATGTGCATCACATGTCTCCaaattttactttcattcttccagggtttttttgtattttacttgttTCTAAAACTAACTATAGGTTCTCATAATATCCACAAGAAAAATAGCATGAAAGATTCAGTTGTTTGGTATCCATCAAACAACTGTTGTTTGGTATGACTAAATAATATAGGATAATTTGATGGTTGAGTGAAATTATTATGTTGCAAATAACTAAATCTTAACTCATAAAGTTTTCTGTTTAAAGGGGGGAAAACAGCCAAACTGCAACATTAAGCATGATCGTAatcagagtttta-----aaatattttttagtgaaattagcat--------------------tttaaaaatggtacaAGGATTAGAAGTAATCTATCACAAGACTCCAAATTTTATAGATTAGGcaaatgaaaccagaa

a score=12409
s chr3           147935051 883 + 160039680 tgccccgctTAAGGTTGCTTTTTTGATACAGTCA-TCATTCATATTGCTTACCACACATCCCCACCATACATTTCTGTTTCCTGGGCCCCACA---GAATGATGACTTTTCAAGCCTCTGGACTACTGAGAGTTGAAGATAGGTTAAGATAAAAAAAAAACC--TCTCAAGAAAAGTTGACCTGTGGATTATCTTAAAACATGCTAGCAACCCCAAAACACATCCAGTAGAACACAAACCCAATAGA---GTCACCATCAACCTGCCGT-ACCAGAGAGTATCCCAACCTGACTCTACACTCAGTACCTAGCT----TGAACTGCTTAGTCAAAAGAGGGATCACATC-CAGCATAGTATGGA--------------------GGGAATCTGCTAACACCCAATCGGTGGGAT-GTGTAGGG-TGCTTTCTGGCAGGTATTCCGTCTCT------AAAGTGGGGTG-----------TGCTCTCATATTGTGTGCTGTA--ACCATCAGTAAAGTCAGGGACATCATACACTTATGTGTTCCTTTCATTATTGTTTTCACTACAGTCAACAACTGGGGCAATGAGCTTGCATACTCAAATGTCCATGCTGAAAATTGATGCTGTATCTCTCTATTAAGTGCAAGTTGATAAATGTGTTTACAAAAGTG-AAGAGTATTACTGAACGT--GTGTTTGGTTTTGATGAAAGAATAAATCAGGTATGTAAGTGAGCCCACAGATGCCCACAG-TCCTGAACATTGAGGAAACAACTGAAGCATTTTAAGCAGAAAATAAATAATAAAACTCTACCCTGGACCCAGGGTAACAGTGTTAAGGAGAACCTGG-------TTATACAGCTAGGCAGTGCCCAGGGTTCTCCTGACTACCAAGTTTTCTCTTGGTGATCACAGATAGCCtgatcaattctatgcattgtcatctcga
s HiC_scaffold_1 134643776 879 + 233722169 TGTCCATCTTAAA-TCACAGTTATGATACATTCAGCCATTAATGTCACTTACCAAAA----CAATGACATGCAACAGTCAGCTGGTGTCCACACCAGAGCAACAACTTTTCCGTCATT----------ATAGTTGATGATAGGTTAGTTTAGTAAATGCAGTGTCCTTTAAAACAGGTGACCAAGGGAGT-TCTTAA---------GCA--CTCAAGTACTGACCCTCAGAAATCAAAGACGGTATACCCTTCACCATCAGCTTATCATCATCAAGAATAACTCCAGCTGGACTCTAT--TTAGTAGATAGGTAAGCCAAGCAAAAGAGT-AAAAGAGGGTTTGTATTTCTGCGCAATATGCATTGAAATTTTTACCCTCCTCAGTAATCTGCTATCATCTGACAAGTAAAACCATGCAGACCTGCTTCATGCCTGGCATTCTTACCCTTGCccgaaaatgggaaaaaaataataattacctGTACTTTGTCTACTGTATAAACATAATTTAAGTCAGTAACATTgtacacaaatattttcttttcattcttatcttttttgaagtcatTA-------------------------------TCATGTTAAAGATTGATGCTGCCTTTGCTTATCAAGAACAAACTGACAATTGTATTTACAAAATTTTGAGAGTCTGATTGAATATATGTGTTCGTTTTTGAACTAGGAAGAAGCCAGCTGTGTAAATTAGCACA----TGCCCACAGGTCCCGAGCATTAAGAAAACTACTGAAGCAGGATAAACCAACGGCACATAGCGAGACTCTGCCTTTGACCTAGGGCAACAGTTCTGAAGGAAGTCTGGCCTTGGCTCAGATGGCT------TGCCTGGAGGTTCCTCTtctgctcttttctctctctgtgacctTAGGTGAAATAATAAACTGTTCTGACTGACACTTTGA

a score=36906
s chr3           147937292 2734 + 160039680 AAGTAAACCGCAGTAGACTTCCGGTAATAGTCAACCCTACCCCACATCTCCA-ACTCTGGTATTACCACG-------CTGAAGCTTTTCTTCCCATCCAGTTTGAATACAAATTGCAACAGACTTTGCACACAAATGCCTATCATTAGAAGTCTCTCATGTCTCTGCTTCTAATGAAATCTGTTTCTCAGCCTCATTATTACC--------CCTCATCCCTTGATAGCTCACTACTGTCGCAGATCATCAGCACCTCTTCTGGCTTCATTTGCTTGCCTAAGCAGCCTTGACGTTAGGGTCAGTCATTTTATTAGATTGTCACACTCTCTTGCCCAAGAGCTGCCATTCTAATCCCCAAGAATGGGTAAGTACAGTCATCGGCTTTCTTGCCTCCCAGTCCGGGGCTGCCAGACACTACAGAGGAAAGTCACAGAGACAGGTTGCCTGGTTCCAC-----TTA---------------CATCTGAGTTCTCG--ACAGTTTGACAGAACTTGTTCTCATGGGTGATTTACAGTCTTTGGTCTTTTC---AGTGTCAAATCCAG--TACTCCTCCCCACCTTGG-TCCAAATGGGACACATTGTTCCAGGAGCTAAAGAAAGTCAAGTCCAATGTT---TTTTCTTTCTC-----ATATCTAAAATCTCAGCTTTCCATTCT---------------GGTCCCCTCTCCTCTCAGGCTTAGCCTGCCTTTCCCTTGAG------CCTGTAGTCAT------TTTATCTCTAAGCTTTGT---------TTCCTAACTAGGTTACTTCAGGTACTCAT--GTCGCATGTTTTGTCCTTGACCTTTCTTGGGAAAGGAAACAaaaaacaacaacaacaacaaaaaaaaaaacaaCCAAAAACGGACTCAACAATTGTTTCTGCTTCCTCGCCAT------------------------------------------------------TACCACTTCAGTGTCTTC----------TGTTATCTCAACCataaataaa------taaataaataaataaataaataaataaata----------------------------aataaataa------------ataaataaatCTGGTGATGTGTTTAGGTTCCTC--CTTTCTGTTCTGTGTAAGGTGACTGAAACTCCTAACTCTGTACTGTAGTGATCCCCTCTGTG-------TCCCTACCAGAAATGGCCTCCTCGGATGCCTGCCTCCTTTCAGTGGT-AGCGGATCTTACACAAAATTGAGATTCAGAGTCCACAGT-GTACGTGCTCCCTATACCTCCTGTGCTCCTT-------------CTGATGCCCTACACCACTTTCATCTGGACAATTTCTCTCACATTTCTGTTCTATTAGAAATTA-CTTTCCGAAATGACTGAAAGAGATTAATA-CGATTTTCCTCTTACTGCTTCTCTTTCAGTTAATAATATCTTTGTGCTCTGGGATTTTCAA-------ATCTCTCAGAATTTCCTAATGTATCTTTTATTCTTAGCTTTTCTCACCTTTATCCTATCGAAAAGGAGCCCGTGCTCTTCCCTTTATAAAACCAGAGATTGCCAGCTGCTTGCTTGAACTTGGAGATCGAGGGAAGGGGTTGGTGGGCAAACAAATCACACCTGGCGGTTTTCC---TCCAAAAGAAATATTGCCAATATCCATGGCATCTGATAAAAGAGAGTAAAGACCAGGGTCTCAGATTCCGAGAACTGTTT---GAGCTGTTCACGCACAGAATGCATACTGTTCTGTTTGCAGAGTATGCTTGTGTTTATACCTGTGAGGTCGCTTTATCTATATAATCGAATTCGGTGTTTTATAAAATGCTTTATAAGGGCAGGCTTAAAGGCATCACAGAGGCAAAAGCATGTACAACTGAGCTATGAATTAGTTCACTGGGA--GGAAATACAGGCTAAATAAATGCTAAGCAAGAAATTCTGGTCAggggctggcagaatcgctcagtgggtaaaaacagtagatagcaagtg-tgatgacctgagtttcaccctggagacccacatactggaaagatagaaatgactcccacaagttgtcttcagacctacacacacacacacacacacacacacacacacatcaaaaaccacaggatgccatgatgtgagtacatgcatacaaacaATGTAACACACAATCTTGAAAAGAATACACAAATTTCTCCTTTGAATATCCT-TTCTCCTAAAGTGCTTCAAGATGTATGTTACCCAGAAAAGCACTAAGGCCACCAGGATTCTAAAATGACTGGCATTCTAGGAAGGCTTCTTA--TTTCCCCTCACTTACAAGTGTGCTTTGG---------GTAAGACAGTTTG-AGGGGTATTTGGAGTTATGCACATATGTGAACTTAGAATAATGAAGGTTTCCAAATACCCTTACATGACCTAAGGAAGCAATGTATAAGATGACAGAAGTCAAGAGGTATGGTCTA-TAAAGTTCTTTACTTACAGATTGTCTAACACCATCAATTCTGAATTTAAAC-------------------------------------------CCATACATACAAACACACACagagagacagagaaacaaagaaagaaagacagagacagagagacagaaagagGCAGGCACAGAGGGATGCACACACACATATA------------------------------------------------------------------------AAATGTCTCAGG--TATCCAAGTTCTATGCTTCAGTATTTgagtgcag-----gcttgagggttaaatcaagaagagtttggtattaattccaacttagcaatttactgcctgtgtgacctggagacatatcaagatctctatggattacagttttcccatttacagtatggtcatatcaactacctaccaaaaaggtggtgtggttaagaggaaatatatttt-aataacaaccttggagacatgtacacatttaacaaatgTGTGTTCATACCTCTAAAAAGCACAGTGTGGAGCCTGAAC----ACAGCTTCAAAGTCTTCT
s HiC_scaffold_1 134644837 2795 + 233722169 aaacaaacaacatCAAACTGT-GCTTAAATTCAACCTGACCACACGTTTTCAGATCCTTGTAGAATCATGTTTGTCTCTG----TTCTCTTCTAATACAGTTTGAGTACAAACTACAATA-ACTCTGAGCACAAACTCCTATCATTAGAAGGCTCGTATCTCTTCACTTCTAATGAAATCTGTTTCTCAGTCTCATTATTACCTCTTCTCTCCCCATCCCCTGATAGCTCACTATTGTCTCAGTTCATCAGTCCCT-TTCTGGCTTCATTTGCTTGCCTAACCAGCCTTGACACTAAGGTCACTCATTTTATTAGATTTTCACACTCTCTTGCCCCAGAGCTGCCATTCTAATCCCCAAGAACCGGTAAATACCATCATCTGCTTCCCGCATTCCCAGTCCCAGGCTGTCACACACTGCCGAAGACAGTCACAAAGCCAGGTTGGCTGGTTCCACCACAGTTACGAGCTATCTATAGTCAGCCGGGCCCTTGTCGCTGCTTGACAGCACTTGTTCTCACCAATGATTTACAGCCTTTTGCATTCTCCATAGTGTCAGTTCTAAGCTTCTGCACCCAGCCTTGGTTCCTCATGTGATATACACTCCCAGTTGTTAAAGAAAGTCTAGAGGAAagcttcattttctctctctgtttctaacCAAAAGTTCAACTTTTCCTGCTCCTTCCATGGGAAAATGTTGCCTCTCCTTT---GTTAAATGTTTCTTTCATTCTAAAGCTCTCCTGCTTTCACTAACAGTTTATCATGCAAATTTGTCTACATACCTTCATAACAAGTTTTGTTCAGGCACTCTCTGGTttcatcttccttcctt--ccttcctt---------------------------------------------------------tcttccttccttccttccttccttccttccttccttccttccttccttccttctttccttccttccttccttccttctttccttccttctctctttcttctttctttcttttttctctctctcttttataaaatttcttgaaAGGAAAGACAGCTTCATAATTAACTGTCTTTATTCTTACCACCTACTCCTTCCTTATGAATCACTTTTGATTTTCAGCAGTAACTCTAAGGATGGCTTTTCAGTCCTTGGTCTTTTGTCCTTTGTAAAGCAATTGATATTATCCACAGTGCAACGTCCTAACCACACCCACGCGTGTGCTCCTTTGCAGAACTACCTTCCTCCAACTCACAAGT-CTTTCGCTGGTCCCCATATCTTTGAGATACCCAAGAttcagcctccagagcagtgCTTGCCTCCTCACTCCCCTTTTCTCCTCAACAGTCACTGGATGGATGGCCT--GGTTCTTCCATTTCTGCAATCTTACTAACATTTATCATCTATCCAGAATTATTTTTCCAATACTATGGAAACAGATTGACACCAATGTTCTCCTAACCTCTTCACTTTTA------AGTGTATTCCTGGACAGTGCATCTCCACACATGCATTTTTCCAAGTTCTTTAATCTGTC-CTAATTTACAGTTACTCTCATCTTTACTAGGTCAAAATGAAGTCCTTGCTCTTCTTTCTGTAAAACCTGAT-CTATCAGCCAATTGCCTCTACTCAGAGGTGGGATGTAGAGGAGGGAGCTGGAACAAGCCAT-TAGGTAGATTTTCCCCTTCCAAACTGAATAATGCTGAAACCTATTACATGTGATTTAAAAGAATACACAACA-----CAAGATGT--ACAAATGTTTCCAGACTGGTACATGTATGGTCTGTGCACTGTTCTGTTTGTGTAATATACTtccttgtata-------------tatatatatata-----------tatatattacattgcTATACAA----------------Atctcatatataa-------tataa-taag---taAAGTATTTCAATGAAAACGGAAACATAAGAACTACAAATATAA--------------------------------------------AAGAGCATAAGATAGTAAAAGATggcaatatatatt---------------atttaatggaGAGA-------------------------------------------------------------ATAAATTAAAAACCAT------------------------------AACTAAGCA------AATTTTCACCAGCATTtaccaatttttctttt--atttcttattcccTCACAGTGCTTCAAAATCTGTAAGGTTCAAAGGGTCATTAGAATCTCCAGGGTACCA----------TATTTTAGGGAAACATGTAAACTTGATTATAACTTATGATTGCACTTTGATCAGAAATTATGAGATAATTTGTAAACATATTTGCAGTTACAAGCATGTATAAACTGCTAA--------GTTTCCAAATACCATTAAAGGATACAAGAACGTATCCTAGCACACAGCAAAAGTCAAGTTAT-TGATCTAGTCAAGCTCTTTATATAGAGATGGGATAATCATATCCTTCctaagtaaaagaaagaagaaaggaagagaggaagcaggaaggggagagagaaaggaaagaaagaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaaaaaaagaaaaagaaaaaaagaaagggaaatggaagaaaaagaaaagaaagaaaagtaaagaaaagagaaaagtaaagaaaagaaaagaagaaaagaaaagcctgagAGTTGTCTAAACAGTACACTTCAGTTTTTACATGCAAATTCCATTCTAGGGTCAAATTAAACAAACCCAGATATTGATTCTAGGTCAGCCATTTACTAATGATGTGACCTGGGAATATATCCAGA--ACTAtgagtttccatttcctcatttataaaatgaacataGCAACTACCTTGCAGAAACCTGGGAGGATGAGAAGGATGTACCCTTTGAATGAC-ACATTATA---ATGGAAACAATCAATAAACAGTTGTTATTAACTCCTAACTGTAAAATAAGGAAGCTAAACTATGTAAACTTTAAAGTGATCT

a score=19581
s chr3           147942896 1100 + 160039680 GGCCCTACTCTGATCTC--TAAAAATTTAGATTCCCCTTCCTGGAAAC------GTCAGTTACTGATAAGTTCAGAATTCAGTGGCTTGAGCATCCATTCCTAATTCAACACAGCCTGAA--GTCCACCCTGGCTTCAGAGATTCCCATGGAATTGGCT-------------------TATTATCATTTTTCCTCCTACCTAACCCCATCATCT-TTGCTGTCATAGCCACTGTTCCTTGTAAATAAGGCATCTGCATGTAACACTCCATTTCAGAGTCTGTTTCCAGGGAAACCTGTTCTACTGCATCCATTATCATCAAATAATGGAAAATAATTGGCAGGATGTTTTTACCAAATAACTTGAAAATTAGAAGCTTTCTACATAAGCTCAAAGTCCAAATTTAATCCACCAAATGCTTTGAATTCCCCCTCATCCAAAGGATTGGATTTATCTTATTTTATTCAATTTCTATGTGTGCAAAAGGAGAAAGAATGTAGAAACCCGGGCATCCAGGAAAC-CGGACCCTATCTTGTCCTTAGAGATCAAGTTGCATAAGGCAGGGCCAGGGACACTGGCCTTCTCTCCTTGCAAAGCTGCTTGG-----CTTTGCTAATGGTGCTTGTGGTTGGAATGTGTGCCATGCTGACACGGCTCCAGTTGCTTGGATCTGTCAAGAATGCCCCTGGCTGAGACGTGGGCCACATCAAGACTGATATATGGATGAGATTGTCCTCTTCAGCTGAAAACACAGCAGGACAGCTTGTGTGCATTTTAAAGAAAAGAG--CTGTATTTGAGCACAGGGTTCTGGCCCAAGATCAAGAGGTGTCCTGTTGTAATGCAGTTCTTGCTGCAAAGCCCTAAGGTAGCGCTAGTCATCACAAAG-------------------TAATAGGCAAAGTATACCTG--TGTTTTCCTGCTGGCCAG----------TCCCTTTTCTATAAATCCACCTGTCTTGAACCACGTAGCTTCCATTCTGATGACCTTTC-TAATCCTACTGATTTCACAGGGACCCCATCTGTAAACACCATAGTTGGGTGTACTCTCCCTGTTCTTAATGTGACTGATGA-TTAAGCTGTA-----ATATAGATTTTA---CGGAATAAGTTAATTTAAGTGGAAACTATTAGATTTTATTTTTGGTTC
s HiC_scaffold_1 134653885 1091 + 233722169 GGCTCTTCTTTGATCTCACCAAAGGTTACAGTTCTCTTTCCAAAAGATCCTTTTTTGAGTCACTAGTAAATTTATGATTC--TGTCTTAA-------------AATCAAGGCAATTGTAAAGGGCCATCTCAGTTGAATAAACTATCATGGAATTGGCTCTGGCCTCTCacgtaggtttttttttttttttttttttttctaatccttTCTTCTGTTGCT-TAATAGGTTCTGTTTCCTATAAATAAAGCATCTGCATGCACCTCTCAACTTCAGAGTCTGTTTCCTGGGAAACCTGTCCTACTACATTCATTATTATCAAATATTGGAAA--AATTGGGAAGACATTTTCATCAAatagctttaaaatcagaaacccTTTGC-TTAGTTCAAAGTCCCAAATCCGCTTCTCaagtgttttgaagtccttttccTCCAAATGACCAGGCTGACATTACTTCTGTTATTTTCTATAAGAACAAGAGGAGAAGAAATATAGAATCTTGGAAAACTAAGGAACAAAAATCttacatgatttttatatatCA-----------------------------------------TACAATGTTACCTAGAAAGTCTTTG--AATAACTCAT-------GAATGTGACTTTTCCT-----GTTTATAGTCATTTGATTGCATTAGCTTTGCCTATAGATTTAGTCTGGGTCATACTGGGAATGTTATATGTACTAGTCCAGTTCCTATCACT--AATGACAATAGCACAGGCTgcttatattttaaaggaaagaaacttgtatttga-ctcacagttttggTCCAAAGTCAAGAGGCCACATCTGGTGATATCCTTCATCTTG-GCTGTCTTGAGATGGTACAAGGCATCAAGAAACTCACCAGCGTTTATCATCTGGTATCTgatgtctctctgtctgtctgcctgcctgtctgtctgattctctctctctctctcaaagcCACCAGTGTTCAATTATGGGACACTCACTCTCATTACCTTTTATAATCATAATCATTACTTAAAAGTCTCACCTCTAATCACCACAGGCAGATGAAGTTTCACT-TTATTAATAT--CTCATGAGTGGAGCTTCATTTCCATGTGAGtttcagagaggaaaaaacatatt-------aaaccataacattccacctctGGCTC

a score=39016
s chr3           147949343 2392 + 160039680 AAAGTTAATCAATTTCCAGATCTCCTGAGATCCTTAAAGCTGAGCTGAGTCCTGCAAACATACTTGGTGAGCTTCATCTGCTGTTTAAGACAAAGCAGGGCCCTCCTTGCTTTATGCCTAATGGAGCAATTAGGTCTTTGGCTTTTTCTGTTCCATTATGGAAAAATTATAATCCCTGTGTCGTTTCTTATGCCTAATAAGATTTAAAAATGCAGATAAGGGGTTAATATGCATATGATCTGTTAGTGTTCCTCTGAAATGAATGATTACTGTCAATCTGAACCAAATGCCTCTCCGGGTAGTTATTGCGTGTCCCATCCTGCTTGCAATACCT-------TTCTGTGGAATGAAGGAAAAGGATGAGCAGGCCTGAGATAAGGGTTTGAGAAAATGCTTGTTTGTTTTCATTACAGAAAATAAGCGTGTTATTGACAATTGGCAGAAACAGAGTAGTCATGTGTTTCCATGGGAAACACGACCCCCTC-AGGGACCAGTATGTGACTGAAAGCCACAGCACTCTGCAGGGTCATCACACATTAAATCTTTGTTCAGCATTTACTGAGAGTGGACTCTCCCACATCT---AGAAATATTTCCTGCCTATTGTTTGAAATGTCACAAAGAAATGAGGGTGTTTGACTCCGTTCTTGTATAATTACAGAAATAACTGGCTTACATTATTTATTTCTAATTTTATTCACACATTTACACAGTTATTTA--TGTTTTATCTCCACCCTTCTTCCCTCCTAAAGCATATGTGAGGGCTGAGGAGATGACTCAGTGGATAAACCAGTTGCCGCAGATATATGAGCACAGGGTGTCTAAGCTCTACCTAGGCCCAGGGCAAGTTAGTTAGATAGACTTGTATAGCTGGATTTAGTGAGATGCTCTGCTTCAGAAAGACATTTATGCCTACATACATGTGAATATACACATGTGCTCATAGCACACACAAAGATTTCACACCCTCAAAGAAGAAAGTCACATACAGTGTATAGTGTGGTGGCCTTCCGGCTCACACCAACTGTGACACATTCCAGTGCCTTCCTTATCTTCC----CACCTGGCTGTGGTACCTGATTATCCACTAACACATTG-TTCAAGGACACAGGAAGAAAGTCTTCT-----------------------GTTTTACTCAAGAAACACTTAGCAAGGGAGACAAGGACCCCTAAATGCAGGCGATATTTGATGCTAGTGCTAAGCTTATATTGTTGCCATAGCAACTTGGTCAttaaggatatttcagctttttctattaacctctattttcagaggtttataacttcttgataaaaactgcctccaggctaaaatctggcatatatgatcttagACGTGCCAGGTGTCAGTGAATATATACATATGTAGTATCCATTTTCTCAAAG---ACCTGGTGAATTTCCAAATGAATTATCTCATTTCTCACAGGGTACAGATCCATTACATTT-TTGTGAACTTGATTGGCTTTAGAAGTTGCTTATAACAACACAACCAAAAGCATTTATAAAATCTCAGGTTTGCTCTTTCCTTCCCTCA----CCCTCTCTGCAGGGAACGGTCACTCTGATCTTTCTAGAAAATTTGTAAGACATGCCTGCCTGGCTCGTGATAAGTTTTAACCTTACTTAAGTAGACTCAGTTA----------CACTGTTTACCTGGAGTTTATAGCTTACTTTCTTCAAAGTAT-GGGAAGAAGTAGTAACTCTAGCTTATGA---AGGACAGGGGTCATAGGCAATACCACAGCCAGCAGCTGCATTCTGAATCCACCTTT---TCCACTGCTC-----AGACTTCCAGAGACCCCATTCTCCATGATCCCA-------------------CGAAGGGACCCAATAT------------TCATCA--GTT---AGAATTGGACAACACCAAATTCAAAACTTCCTCTTTGTTT---TGTTTTTATGTAAGGT------------TAATCTTCAATATCTTC----TTCCCGAATCT----CTTTTAAAAATTTAAA--CCCATAGGAAAACTGAAAAAATAATAGGAAAACCATTTACTTAGCTCCTGTGGTAACCAAGTGTTAATACTGGATGGAGTCATTTGAGAGTTGTC---AAC-ACTGCTCGTCTTGAGATTTGAATTTGAACTTGAATGACTATCTCCTGGACACAAGGATAGTCTCCTATGTGGCCA--CACAGTGGTCACCTTTAAGCTGTTTAGGATCGACTCCTTTATCTGAACTGATCCATATGTAAATGTTCTCAATTTTTTCATTAA---TATGCTTAATGATTCATGTGACACTT------CAGTGACAAATAGTGTATTATAGTTA---CCCAGATTATAGTGTTCTTCAGGACAGACTCTCCCTTAATCTAACTATATGTTTCCTAGTTATAACTATTTTAAAACTGCGTGTATTTCCCCCTATGTTGTACAATTCTCTGGATATCCAAAGGTTTTTCTTTTGCTTTCTTTCTTTTTTTCCTCTCTCTTTTCA
s HiC_scaffold_1 134660710 2180 + 233722169 AAAATTATGCAGCTTCCAGAAATATTGAAATTCTTGTAGATGGATGAGATCCTGGGAACAGACCTTGTGTGCTGTGTCTACCCGCGAAGACAAAGCCTCACCCTTATTGCTGGATGCCTAAAGGAGCGACTTGTACACTG-CTGATTCAGTTCC-CTAT---AAAATGAGAATCGTTTTGCTATTCCCGATGGCCCTTGTGATCATTTAATGCTGGAAACAG-------------TGATGAGCTAGTATTCCCTGAAAATGACCAATTCCAGTGCTGTAGAAATAAGTACCACTTC----AGTTAGCCCACCTCCATTTCTCCCTACAGAGCCTAGAACCCTTTTGTAGAATTCACAAGAGGAATCATGAGGTTTTGGATGAGTGGTCAATAAAATGATGGCTGGTTTTGATTGCATGAAATACATACATTATTTATAGTTGAAAGA----------CCTCACATTTGTATGAGAAATATCATTCCCACTATGGACCATCACATGG--AAGAGTCAT-GTAGACTACACTGTCAACAA----------CTTGTCTA-CAGTTACAGAAAACAGATTTCTAAAAATCTTTTAGAAATGTGTCTGGCCTGTTATTTGAGCT----------------------------CTTCCCTATATAAATG------------------ACTATCCAT-----ATTTTAT----------GTATGGTAGttcagctgttttatttttatttctttatcc------------------------------------------------gCTGCC-----------------------------------------------------------TTGACTT------------------------TCCTCTT---AAAATCGTT-----------------------------------------------------------------------AAGTCACAATTAACAGAT--TATAGCTACCTTCCGGTTAACACTAGCTGAGGCGTTTTGGaatactttccttttctttcttctcatcctGCTAGCTCACCTAATTACATGGTAAGTCACCGATTCtatgacacagaaagaaaatcttcCTAAGCTAGTCAACTGGCGCTTTAATTTCACTCAGGAAAAGCTTATCAAAGGAGACA-GGAGCCCTAAATGCGGCAGATATTTGATGCTGGTGGTAAGCTTACATCGCTGCCGTAGCAACCTCGTCATTAAGGATGTTTCAGCTTTTCCTGTTAACCTCTATTTTCAGAGGTTTATAACTTCTTGGTGAAAATTTCCTCCAGGCTAAAATTTGGCATACATGATCTTGAATGTGCCAGGTGTcagtgaatatatacatatatagtatgcATTTTCTCAGAGAAAACCTGGTGAATTTCCAAATGAATTATCTCATTTCTCATAGGCAACAAATACATTACGTTTAGTGTGAACTTGATTATTTTTAGAAGATGCTTAT-GCAGCACAACT--AAGCACTTATAAGATCTAGTGTCTGCTCTTGCCTCCTTTCATTTTTCCTCGCTGGCTAGTTTGGTCACACTGATCTGC------------TAAGTGGCAACTGCCTggtttaaaattagttttaaactCACCTCAGTAGAGGTAGTTAGAGGTGGGCTCTCTGTGGATTTGAAACTTTTATCTTACCTTTATCAGCAcgcagggaaggaaaaggaaatctaGCTGGTGGTGCAGCGTAAAGGTTGGAGGTAAAGCAAAACACAAGAGCTAAGACCCAAACCCACCCTCCTGCTTACTTCTCTTTCAGGACCTAACAGGACCGCATTTCCTAAGATCCCAGTAAGATTCCACCAGTTTCCTAAGGGCTGGAAAATAATGCTACCATCTCATCACTGTTTTGAGAGTTAAGCAGCACCATAGCC-ACACTTGGgcttcatttgtgtgtgtgtgtgtgagatcatTTCTTAATACAATTTCCAATCCCTTCATTTTTTCCTAATattctattttgaagaatttgAATCTCcccagaaaaatggaatgaaaaataaagcaaacattcACTTTCTTCCTACATTAGCCAAGTGTTATTAGCTAACTAAACAAATTGACAATTGTTTTGAACAATTACTAATACTCATGCCTAAGT----ATTTACATTAACATTTCATGAA-ATAACTATAGTCCCCCACACGACAAACAACACTAATTGCCCTCAGAAAATTTAACATTACTACTATTACCTAAAATGATTCTGACATGAATGTCCTCCTTTATCCCACTTAGTTCCTGTTTAAC--TGTATTAGACATTTAGGATCCAATAAAGAATAATGGGCTGCTTTTAGTGGTCATGCCACAGTGTGCTTAGTTACAAACTATTTTGTCATTTG-----ATATTTTTTAG----ACCTAATGTAATTTTG---GCATTTT-----------TAGGATTA-CTGACATTacaggggtttttgttttgttttatcaccCATTTTGCTATACTCATTCA

a score=4752
s chr3           147954227 218 + 160039680 GGAAAGCCCATCCCATCCAAGATGAAAGTGATAAGAGATGTCTGCTAAGAAAAGCCACAGACAGAGTGGGCACTGCTTGGGGAAGGTCATGTGTGCTACCAGCAGTAGAGCCTTAGGGGTAGACATGCCCAAG-CCTGAGGGAGCTCATACCACCAGGTTACCAAATGTTCCATATATGGGATATAGTGCTATAGTATTGAATGTCTGTCTTGatgagt
s HiC_scaffold_1  46586893 216 + 233722169 GGAGACCCCAGAGAGCCCAAGATGCTAGGAACATGGGATGTCTGCCAAGGAAAGCTGTAGGCTGTGAATGGAGTCACAGAGAGATACCATGTATGCTACAAATGGCAAGGCTGTGGGAGTGGGGCTGCCCAAGCCCTTTGGAACCTTAT---TTTAGATCACAACATAACCTAGATGCCAGATATGGAAGTGCAGGACTTCAtgtttgttctgttgtgt

a score=228192
s chr3           147962347 9931 + 160039680 [encoded data, 10742 characters]
s HiC_scaffold_1 134672802 9841 + 233722169 [encoded data, 10742 characters]

a score=124487
s chr3           147972654 4648 + 160039680 [encoded data, 5009 characters]
s HiC_scaffold_1 134682637 4720 + 233722169 [encoded data, 5009 characters]

a score=89963
s chr3           147980197 3194 + 160039680 GAAGTCAGTAAGAGTACATAATCAGTC-AGAGCTTAGAGCATCCTCTGCTTAGAACGCCTTTCAGCTCAAGCCTGGATGCAC-AGGT-ATGATCTTACCCCCCCCCCCAATCACATAATACATCAAGGTTATACTCTCTTACCTCGGTATCAATGTAGTAATCTGAGCTGAC-ATTTCATACATTCCTCACATATATTA--CATTTAAACAGTATCTAATAAAATTGTTTAGAAGTTAA--TAGTGAAATAAACTTTTATTTAATCACTTAGAAGTTTAGGTTGGTGGTAAAATGTGCATTTTCATTAAATAGCCTAGTCAAAATGGTCCCTATGTTAGAACAACAGAAAGCAGAAAAGATAGAACTGTGTTGCAATA-GTTAGAATTTGCAATAATA--TTTGA----TTTTAtttttaagacatgagagtactgtatagctctgcctaacctggagctcactatatagaccaagatggcctcaaatgcacagaggtttctctgaccattgcc-----caagtacaattacaTTAGGCAATACTATTTTCTCAAAAATTCCTCTTCCCTCTCAATAAAATCTTCCTAGATTTTGAAT-atacata--------------tacacatacatacatacacatatacatacatacacacgtgtgtgtgtgtgtgtgtgtgtgtctgtgtCTCTTTAGAGTTGAAAAGAAAGTTAAACAGTTTGATAGACAAA-------TTATTTTTGAACTAAATTACATGCATTTGTATTGAAGACCTTTCCAGCTCTTAGAATCTTGATGTGGCAGAGGGATGGAAAAAGAAGCAGCATCCTTCACAGATGGACAGATCCGAGGCACAGAAGTCTGATGGGTCTATTCTAACTAAGCCCCTTTGCCCCAGCCCTTACTTGATGGATGCTTGGGCCAAATCGCTTTTCAGTTTCCTAGTGTT---TTCTGGAGACTCCCATCACTGTAGCA--GATTGGAAAGCTGTTAGATGTCTTAATTGACTTAGAGAACTCAATGCCCTTAGCCCAGTGCTTGTTGCACAGTCAGC--CCAGTGCTTGTTGCACAGTGATAAAACCCAGGGGGACTCACGGAATACGCGT----------------------GGAGCCAT---------------CTTTGCTATGGACCAGAAGCTCTGAAGTGACAGTCCCTGCACCTTTCACACTATTTCTAAGTGTAATAGAGGCATGTCATCGCAACCAAGATGACGTCGGGCTCACAACAGTAAATGTCACTAACTTCTACCAGGAGCTTTTAAGCAAGGTGAGTGGCTGGAGGGAGAATAAGGAATCAGAAATGTTGTCCCCTATTCCCAGTCCCATTACTGACTTTCGAGGGCAGAATAAATGCATCACAAATAAATAAAtaagcaaatcacttaacctttcttcatttcagtctcagcacaatgagggagAAAAGCCTTCGTCTTATAAGGGCTTGGAATTCATTGACT---------CCAAGAGAGGCGAGTCTTATTAACTTCTCAGTGTCTCAGCATTTCTTGTGTGTGTTCTGAGTGTTTGCTTTTCATTTGGGAGATGAAATATTTCCTTAACATTGATATGTGGTAACTGTAGAAATTACGGAAGCCTGCCAGTTTCTCAGATAAAATCAGAGGACAAATGAGTCAGGCAGCTAATTAGGTGAGAGAATGGGGCAGGAGAA---AGGACAGCTGTGGCTAGAGTCAGTCCCCTGATTGTTGTCCCAAGCCCAGGGTGACAACTT------------------GTGGATATTATAT-GATAAGAGGAG-GCAGGTTCCTGC--TTCCCAGTTCTGCTCAGCCTGCACTCTGCCCAGAGTGCTT--------TCACATCCCTTTGCTTGCTGACCCGGCAAGCTCTTCCTGCAGAGCCGAGCTTCTCTGCTTTATAATTTGTATGTC-TTGCTGTTGCTTGACATACCTTTATTCATGAAATAAAAGCTACTTTATTTCAAAAGTCACGTTCTTGGCCGGTCACCATTTTCTCCTCTAT----TATCTGTAAAGCTTATTCTTGAAAGTACAAACAAACATCCCATTGGTTATGTACAAAGGTAC-----TATACATGCGTACATA---------------ATTTTGTTGTTTGTGAGAGCGAC-------AGGGAGTAAAACGAATCACTCTTATT--------AATCACTTGCTATTATTCCTATTCTCTTAGTTATTGTTAAATGATGAACATG-GTGAGTCACTAAAATATTGTGGAAATAC-TGAAACATCGCCAGGT------------TTTATTTCTGGGCGCAAGACAGACACAGAAGAGTTATGGTTTGTTGGCCAAATGAGATCTATTACACTTCTCAAAAATCCTTTATTCA-----TTTTTTTTCAAGAATCACTATTACATTGGCATAAAGTATAGATAAAATACAGCACGGAGTGAGTTTTATAAAGTTGCCT-TACTAGGCATGC---TTTATGAAACACTTTAATAGATCACATTTTAATTTGAATTGGGGGATGTATATTTGTGTGTACATGAATAGGCCTTTTCCTTAAAATTTGTGAATTCCAAC---TTTACTTTTT-----ATAAATGGATGTACAGAATACAGAACAGATATAGA---TGTAAACAATGTGTGTGTGTTGTACCAAAAT-----------------TTGTCATGTAACAATTCCCCAAGCAAATACAATATACACACCAATAAGCCACAGAC-CTGATGCTATACATCTCCGTGTTGTCCTCCTATTAATATTCTTTGAAGAAAATCTTGGAGTGTTCATGAATTTAAATACTTTTC--ATATAAACCATGGAAATATAATGATTAACAATCTGTTGTATTCACAATTCTGGACAGGAGATTTAGTATTTTCCTAATTACATAGACCCGTGTGGGAGGATGTGACTGCTAAAGAAGATTAAGCCATTTGTATTTATTCATTGCTGCTTTATAGCATTAACTCACAATCTCAGGCCTGCTGCATTGAAGCCTGAGGAATTTGATTACCAGAGCAGAGGAGTCGGCCAATCTTGGCTTGAGACATCAGACTCCACTAATTGTCTACCAGCCGTGATTTAGCTGGATCGGCTTGCCACAACCTTGCTATTGATAGGAACATTTGAAATCTGATTAAAATTACTGTTTAATAATCAAGTCTTGGAAGAAGCCCACCTGGTGGATGC---------GTTTCATTTCCCCCATTCGTTTCTGAAGGA--------GATACAAGCAAACTTTGCAAAACTTAAAATAGTCATTTCTTTTCAAGAAAATATTTTGAAAATAGGTTTCACAAATAGGTTACCAAGGGAGAGAATTAAATTTCATTATTGTTGTTATTCATTTGCTTTGTTTTGA
s HiC_scaffold_1 134690125 3229 + 233722169 gatGTCAGAAAGATTCAATAACTTATCTAAAAGTCATAGCAGTTTATGGTTAAgacaggtttcaaatcaagtcTGCACCAATTAGGTCAAGATTTTTCACTACTCatatgtcacattttaaa--aaaattatg---------------ataaaCACATTAACTTAAGCTTATTATTTTATAGAT-CTTTACATACATTAGACATGCAGATTACATTTCATATAATTGTTTTGAAACTGAAGCAGTGAA-CAAACTTTTA--------------AGTTTATTCTTTAGTCAAAATATGCACTCATGTTGAACAGCTTCTTCAAAATAGTGCCTA-------------------------GATAAAACCATGTTGCAATAAGTGAGAAACTgaaaccagaattttaaaaattcctcttttcgggggctgggatt------tagctcagtggcataagcaccttccttgcaag--caggcagtcct------------gggttcgatccccggtaccgataaaaaggaaaaagacaaaaaaaaaaaa---------aaaaattcctcttttCTCCAACTGACATC---ATAAACTTTGGCTTGTGcatgctttaaaaaattagtatcaGTGGAAAGTTACATTGCAATATATATTCacac----------------------------------ttagaaataaaaattctgttaaaTGGCTTCATGTGCAAACCCAAATTGAGGTTAgtactttattttgcttattcatgataaatgtgttttttgcTGTTA-ACTTTTGATATGGCACAGGAATGTAGAAGG--TCAGTATTGTTTA--GTAAAAAAGATCATAGGC-CAGA-GTC------GTGCCTCTTAACACAG----TTTGCCC-ACCACTTACTTG-----TGTTTCGGGAAAATTACTTTTCTATTCCTCACTGTTCTTTTCtggaaatttgaatgaaagtcATACCTGTGGAAAGGCTGTTTTATGTCTTAATT----TAATGAACTCAAAGCACTTAGTGCAGTGTCTGTCACACAGTGGACAATAAGTGTTAGCGGGAT-TTGTGACATCACACCGGGACTGTCTGAATAAATGTCTCGCTTAACTCCATAATTCTTGAAGTTATAATTGTTCAAAGAAACTTTGCTCTGAACTTCAAGCTCCAAAGCGAAGGCCCTTG-ACTTCTCTCACTATTTCTAAGCCTAGGGTAGGCATGTCAGCTCAGTAATGATGATTCTCGACTTATAAAAGTAAATGTCACCCGCTTCCACTGTGAGCATTTAAGCAAGGTGAGTGGTCTGAATgagaagaagaaatcagaaaatctgTCTCCTATTCCCAGCTCCATTACAGACTTGCTGGAGcagaataaataaatcacaaataaataaataaacaagtcaCTTAACCTTTCTGCATCTCCGTTCCAGCAAAATGAGAGTGTTAAGCCTTTGCTTTTTAAGGGCTTTGAAATCACAGGCTGAAAGATGCCTAAGAGTGGCAGGCGTTATTAACTCC-CAGCATTTCAGCCTTTCTTATGCATACTTGGAATGTTTGCTTTTCATCTTGGGAATGAAATACTTCTTTAACATTGATATGTGGCAACTGCAGAAATTAGTGAAATTTGGCAGTTCCTCAGATAAAATCAGAGGACAAAACAGTCAGGCAGTTAATTATGTGAAAGAATAGATTAGGGGAAGGAAGGACAGCTTCCAC-AGA---AATCTCCTGATTGTCGTCCCAAATTCAGAGTTGCAGCTTCGGAAGGTACCAGGGAGGGTGGAGGTTACAGAGATGAAAGGAGAGGAGCCCTCTGCGTTTCCCAGTTGTCCTTG--CCGCTCTCTGCCTAGACTTCTTCAAGACTCTTGCATCCTTTAACTCTCCCAGTGCGTAACCACTTCAATGGGATTCAAGCggctctgttttgtattttttaagcaATCTCTGTTGCTTGATATGTCTCAA-----------AAAcgtattttatttcaaaagccaTATTCTTTGTCTACTA--ATTTCTTCCTTCATGTTTTATTTGTAAA-CTTACCTTTGAAAGTGTATACAAGTctcacaca---tatatacatagatatacagacacatatgcacacacattctcatgtgtgtatatttttctttatgtaagaATTTCTTTGTTAAGGgaataaa-taaat---tcttattttgttgACAATCATTTGTTATCACGTTATTTtgcttaattatatttaaatgatgAACATTTGCACATTTTTGATAAATTGTTGAAGTATATCAAGCATTActatttgttactttattttttgttcctgtgCATAAGGCAGACACAAAAGAGTTACGGTTTGTTGGCCAAATGAGATTTGCTACACTCAtcataaatcttttatttaatgtgttttttgtGGGAAATCAATATTATGTTGGtgtaaaatacagataaaatatagtgcacaatacattttataatactgGCTGTACTAAAGCAGTACTTTTATGAAGTATTTTGCTTTGTCATAgttttctttgaatttggaaCTATATTTTCAAGTGTAAGTGAATGCATCTTTTCCTTGGAATTTGCAGGCTTCatcaaatttgttttcttgtgcacatatatgtgtattgaAT------CAAATAATGACTTTACAAAAAACATCTGCATGCTTTTTCAACATGTGCTACATTTGGATTTTTGTTATGCAACAATTTTCTAAGGAAGCACTGTA---ACATCAATAAGCCACAGATGATAATAATGAACATTCAGGTATTGTCCTTGTATTAAtattcttcaaaagaaatcttAGAATACTCATGAatctaaatactttttttctatAAACCATGTAAATATAATGATTAACAATCTGCTGTCTTCTCTATTCAGGACATGAAATATAGTATTTTCCTAATTACACAGACCACTGTGGGAGGGTATGACTGCAAAAGAAGATTAAGCCATTTGTATTT--TCAGTGTTGCTTTATAGCCTTAACTAGAAGACTCAGTCCTGCTATATTGAATGCTAAGGAATTTGATTATGAGAACAGCAGAGTCTGCCAATCTTGGCTTGAGACAGCAGACCCAACTAATTGTCTATCAGCAGTGATTTAGCTGCATCTCCCATCTACAATCTCGCTATTGATGGGAACATTTAAAACCTGATGAAAATTACTGTTTAATAATCAGGACTTGGA--AAACCCACCTGGCATAGAcaatctttctatttttgtttccccattcattt-tgaaggacaagacagaaaaaaagtaaactgttcaaaagttaaaata-------cattttaaaagtatactttGAAACCAGTGTTTATAAATATGCTATCAAAGACG-GTATTAAATTTTATCTTGGTTATT-TTCTTATATTGTGTTTTAA

a score=42677
s chr3           147986235 1600 + 160039680 aGAGCCCATAGGTCATTTATTCCTCAGATGACAACTTGAACTTTTTAAAAAAGTGAAATTGTATTTTTCAGCTATCCTTTGATCAAATAAAGTTATCATCTGTAATAGAAAACTCTTTCCACTTGTCAGTTTATGGGCTATTTTCAAATTGGCTGTCAGTCAGGCATCCAGCTCAGAGGAGTGGGCAGCTTATCCTCTTAAGTATCTTTCTTTAGACTATATTTTGTATTGTACATTGATAAAATTGGTGAATTATGTGAGTGAGATTAGTCTCAGTGTGTTATACGTGTGTCAGATTCCAAACTAGTCAGAGTTTCTAACCAAACATTTCTTCCAG-------ATTTTGAACGTAT----TAAATGT----------TTGGTTTGTTGTGCATTTCACATCGACCCAATG----------------CCTGTCCATAGAATTCTTGGAAATTGAAGATGATAAGAGGTTACAATGTGAGATCTACAATTTTCCATTCGAGA-TAGGAAATA-TAGTGGAAT--TAAATGTGTTGAATTCTTTAAAACTGAGG--------------------AAATGTATTTCACATCATTACTTTGTTCATCATTAACAATAAATAGTATGTACAAAAATTGAAATCCATGGGTATTTACATTTTCCACAGCAATTAATTCTTATACAAGCTTATGAAGAGTAGAATAAAAGGATTTCTGATGGGTGGTAAGATTTTTACAATGAACATATGCAT----GGACAAATTTTGACAAATACAATGTTAATTATGAAACTTGGTTGTAATAGCTACAAGTTAATTATTGTGACATGAAATGGGTATCAGCAGGAGCTGGGA-AATTGATGTCAGGTGAATGTGGAATCTCCCCGGGATGCGCTCAATCCCAGATGAAGTGATTGGAGAGGCACAAACGCTATTGTGATGTGTGCACACATCCCCTGACGAAGCCCGAT---TAATTCCAAAAGTTGATATTAAGCCAGTGGGGGGAAAATCCACACAGATCCCTTTACAAAAGTTTGATTAGAAGCAGTCTATTTCCTGTCTTTAGCGTATGAAGAATGCCTTTCGTCTGGGAGGATATTTTGCTACAATTCATTAAAGGGTCCAGTGAGCTTTCCCTCCTCCCTCTCCCTCCTCCTTCAGTTGATTCGTGTCCCATGATGCTAAGTGTAATTCTTTTCTTTTTTATTGTCTTCTCTTCTCTTTATGTGAAA----AAGTACGTGGCTTTTACATTCTTTTGTTTCATTACAAGGCAAATTAGGGAGCCATCCGCTAGCCT-GTTTGTGA-ATTTCATTCATTCTGGGATGAGCAATGAGAAAAAAGGCATG----CCAACTGCCTGGCAAGCCCTCATCGCTTGCC--------------------CTCTCTGTCCACTTTAACATTAT--TCATGTATGTACTAGGGTGGTGTCTACAGTG-ACTGAAGCTGAAGACTTTTTCTTAGCTCTCTATTAAGTCAGTCCCATATACTAATCTTTATTGGTTTGCTGTCAGTTTCTGTTCCTATACTTGTAATTTCAAGAGACAAATGGGCAAAGcacatacacagacacagacacacacacacacacacacacacacacacacaTTTCACACATTCCACAAAATTTCCAACAA--GCTGTTATACCCAGAATTGAGGAATGGAAGAATAAAGgagaa
s HiC_scaffold_1 134695330 1590 + 233722169 AGGATCCAGAGGGTGCTCTGTTCTCAGATTATAACTT---CTACTCAAGATGGTGAAATTGCATTT--CAGTAATCTGT-------ATCGAGTCATCTTAGTTAACAGGAAACT--TTCAAATTGTCAGCTGATAGGTAATTATCAGATTTAATGCCAATCA---ccacatttcaaaagaaatc----ctTATCCATTTCaatatcttatttaaaattttatgt-gtattg-AGATCAGTGAAA-----GAATTATGTAAGTTACAATAGCCT---TGCTTTA-ATCTGTGTGCaattctaaatttctcaaattttgtgtttaaacatttctttccatGCCACTGTTGTGTAAGTATGTCTTAAATACCCCACGGAACTCCATTTCTAGT---TTCCATGTCGTTGTTatgaattaagaaaaacaattatgTATTCTAAACCCTTCAAAGTCAAAAATGATAAGAGAT-ATGGTGCcagatttataattttctgttaGAAAACATGAGATAGTAATGGAATATTTCAAGAATTGA-TTCTTTAAACTTAAGGTAATTTAGGCTACTTTGAAGACATATATTTGCctctattatttttctcatcattaaCACTAAATAATTTGAACATAGAGTCTAGttcatttctatttaaattttaaactgggATTATATCTTTCTGttaattataaacaataaaa--acatgattT---------GGAGAGGTATTGATATTGCTGATAtgcatatgagaaaaaaatttgacaaataaaatgttaattatgAAATGTGGTCATAATAGATACAAGTTAATTATTATGATATGAATTGGATATCAGCAGGAGCTGGGATAATTGATGTCAAACGAATGTGGAAACTCCTTAAGATGGGCTCAATCCCAGATGAGGTGGTTGAAAATGTACAAAAGCTATTGTGATGCATGTACTTGTCCCCTGACAAAAGCCAGTTAATAATTCTAAATGTTGACATTAAGTCAGTGGAGAGGGGGACTATAAGgacctttttataaaaatttgaacAGAAGCAAGCTATTTTCTATCCATTAAGTATGAAAACTGTCATTT-TTGAGGTGGATACTTTGCCACAATTCATTAAAGGGTCCATTGAGTCTTTCATCCTCCA---CCTTCCTCCTGTAATTGTTTCATATCCCATGGTACAAagtgtaatttgttctttttttattttcttcctttc-----atatggAAGTAGAAGCACATGCATGTCAGattcttttgtttcattacaTGCCAAATTAGCAGCACTTCCATTAGcctaatttttgatattttattaattctGGGAATAACAATAAGTAGAAGGGTGGGGCCCCAAAATGTGGAGCAAAGTCATATCTCTTTCCtggtttggtttcttttctttctttctttctttctttacatttttgtcattagttggggaaggaaaaatttccattgaattgAAACTGGAGACTT----TTAGCTCTTTATTTATTCAGTGCCTTTTG-TGATCTC------TTTGTCA-CAGATTTTGATCTTGTGCTTTTAGTTTCAACAGAAACATTGACAAAggttgtgcaca-------------------------------------------cacacatttcacaaattttccaataattatttttatatgcagAATTGAGCcatata--aatagatgaaaa

a score=60668
s chr3           147989348 2424 + 160039680 CTACCCAGAAGATTCCGTAAAATCT-------GTCATCCTAT-CTCACATACTTCATGGCCTCCTTTGCCTCACATCCTGCTTTCCTT------------------------GGGGAAACATATCCTTTATGAAAAGCTCCTGGTGTTCTCCGAGTTAGCACCCTCCATCTGGGAACTTCCATTACAAAGCCACACTTTCCCTGTAGCCTGTCAGTTAGTTTT----GTATCTGTGCCTGCTTTTGAAATGAAACTTTTGTGGAGTGTT--ATCTAGTATATTAATTTGCATCTTCATATTACAGAGATTTAATCTGTACATTT-TAAAATTCAACTGCAGAAAATATACAT---AACATGAAATAAATCTACTGAAA-AAAATATGTCTCACTTCAACATAtaagagt---tcacttgcccagtgtattgggtggaatgaagagcattccatatgtaa--tttccagataacaaagaca-tatttatgttcctatttttgataccaacattttcattaaaaaatggctcttaagtagatggcctgttttcacattgtaacaaaatacgggcagcatgatttaatattttcttaatgactttagggtctttttcctaagaatcaattatttaactttctgtTGCCCTTAGGAGTTGTGACCTCTGTGCTCTTCTAGAACATAC-CATGGAGAGGTAATGCTGCATTCTGATTTCTGTC---------TTAGTCTTGTTTTCCTTTGTTAGCATACAGTTTTCACATTGT--TAACTTCACAGTTTTAGGAAGACCCAAGACAT-------AAAACCCCAAATCCTCCCATCCCTGCTAGTCCTG--TTCCTGGGGATCTTGAATTTTTTGTTTTATCATCAGCTTTTGAAACATTTTAGTGATATTTCTCTTCTTTTGTGCTTTTCAATTTTATAGCATATTGGGGCGGGGGA-----GGTGTTAGG--------------GACTGCTCATGTACCATACTGAAGGACTGCCTGAGGTGGCTCTCAGGG---ATGGGACAAGGGTAGC-------ATCTGTAACTACAGCTTGTTTCGTACTAGTGGAAAAGATATTGGTGC-------------TCTGGAAGCTCTGGGCGATGTCACCAATCACACCAGTCAACT---------GACAGAATGCTGTCCCAGACGCCAAAGCTCTGGGTTTCCCAC----TATTGGGTACTTGGGGGCTGATTGGGTGGC-------------------------AGGTATGTAAGGTCAAAAGCAGACTGACAAACTTTGCTAAAGTGAGGAGGAGACTCTCTGCCCCTGG---CCTGTGCAAGCGGCTGACTGAGTATCCTGGAAATGGTT-ACAACAGACACTATTCTGC-ATTTCAGTTA-AGGAGAAAGTACATCAAGGTTGCTTTCTGCATTTGAAGAGAGAGAGAAAAAAAACCTATATAAGCTGCTCTATGAAATACGGATAAAGTGTCAATCAAAGCTCCCGTTTTTCCCTGTGTATGGTA-----ATATGAGCTATATTGCTCTGTTACTTTTT-ATTTTTAAACACA-CTAGATTCGGTACTTTGGCTGCATT----TCCCCCTTCTTCTTCGTCTTTCCCCAACCCAACTTTAACAAAGACCGAGGCTTCAAACTCTTTTCATTGCCAGGCTTGGAAATCCTGCCAGGTTAAAAAAAAA------------------------------------GTTATTGAAAACCTTTCTCCCCTTATAGGCTCGTTTTGACAGGAAATCTTTGAGAGGCAGCGGCAGTGAGGTGCCCAGAGATTTCATCT---CTCTTTTGCTTTAGGAAATGCTGAGCATAAGGCTCCCTATTAGGCAAATAGAAAGAGCAGCAAAATCCCCCAACGATCGTC-CTCCCCGGCGCCCGGGCTGACAGCCCTCTGCATCTTAGACCACCAGACAGAGCCACG-ACTGAGGATTCTACCTCTCAGAGGCATGGGAAAAGTTTCTGACAGCGGCTTAC-AAAAAATATTATTTTGTCTCTCTTTACAGATCATCTGGCTCTATAAATTTTGCATGGGCTAATCACAATAAAATCTACCCTGCCGAGAAGGAATTCCTATGCAGCGTTTCTGCTT-TTGTTCTGCACAATTTTGACAGGAACTTCC----------------------------TGTCTGGATGCCCCCTCTCCCAGTCATTGGGTATGATTAGCTGAATTTCAGGAGCTAGCTACTAGCAGCAACACTGAAATAGCCAAGAAGAGGAGGGTGTTTAGAATTTTTCTTATTTTTATCTGTTTCGGACCGAAGTAAAATCTAAGTTTCAAACAGTCTTGGAAAAAAGCAAAATACCAGCTTGTGATAATAATGCA---------AAAGTATGAGCAGACA-AACTTTGAAAATAATTAGGATTATATAATATGCATAAAATGCACAGTAGAAGTTTTTAA----------------------------AATCTCAGGATTTTAGATGTACCTGTTCATGTTAGTTTATACGTGTATTTTGCT-----------------------------------------TTTGCAAAAA--AAAAATGCCTAAAGTTAGAAGTGTA----AGTTTGTGAATAATTTTAACAAAAAATGTGATAGAAGAGAAATAGATCATG------TACTATGTGTGAAATTAATCATCCTGTAGATGCAGGCA
s HiC_scaffold_1 134697586 2668 + 233722169 CTGCCAAAAAGAttccatgattttcttttaacGTTAACTCATGACCATGTACTTTATGACCTTCCTTGTTTCACATCTTCACCTccttcttaggaaaaaaaaaagacaagacaagaaaagaaatgctTTGTTGAAAGCTGCTGCTGTTCTAAAAGTCAGCTTCTTCCACCTGGGATCTCCCCATTAAAAGCCTTACGTTGCCTACAGGCTGCCAATTAGCCTTCTCCATAACTGCAGCTGCTTTTTTAgagaaagttctttttttttttctatctattGTGCTAACTTGTGAGTTCACATTATAAGGATTTGACCCATAAACTTCTAAAACCAAACTGCAGAAAA-ATATATTGCAAGATGAAATCAGTATACTTACGTGGACTCTAGCTCCTTTCAACATATAATAACACCTCACTCGTCCAGTGTGTTTGGTGACATGAAGTGTCACCCAGTAGTAAACTTCCTAGATAACAAATGCGCTACTTATATTGC-AGTTTTAGCATGGACATTGCAACTAAA----TGCTCTGTAAGGTGTGG----TTTTCATATCATAACAAATT----GTAGTAGAATTGAACATTTTCCTAATGAATTGAGAGCCTTCATTGTAAAAAGTCAACCTTTCCGTCTGTATTACCCTTAGGGTTCCTGACCTGTGTGCCCTTCTGTTAAATGTTCACGGATAATTGAAGTTTTATTCT----CCtgttaaaatgttattaatattGTTCTTCTAGAT-------CAGTTTTCACTTTCTAACAACATGaccattttaaaaagatcaaagatGTCCTTGACAAAAGTCCA-----------CAATGTGAATCACAGATTCACACAGAAAACAAGGTACACTACTTATTATTCATAtttaagaaacttaa-----aatttatttttttcgaGTTTTATGCCTCTGTTTCAAATCAGGAGGGGAGACTACCGGAGAAAGAACGCAGAGAATTATGATTCCCTATGATTCGTACCGAACAGCCAGTGGAAACAGCT----GGGTAAATGCAGGACGGATACCTTGAGATATATGTTTCCACA-CTTGTCTGCCACTAGCGTGTCAGATGTGAGTTTGaatgcatttttttctggaaacgGTGAAAAACAACCCTCATTACCCTTATTACTTTCGTTTGTAGACTCAACGAAG--CTTGAGGTTAAAGCTCTATTCTTCCTACCAATTATTAGATATTTGTGGGCTCACTGGGTAGCCAACAGATGGCAGGACGAGAGTACAGGATTAATAAGGAGAAAGGCAGACTGGCACACTT-GCTTTGGTAATAAGGAGAC-CTCAGTTCCTTATTCCTTACACAAGTGACTAAA-----GTTCTGAAAACGGTTTGCGACTCTCATGCTTTCGCTATTTCAATTGGAAAAGTAAGAACATCAAGGTCACTTTCTGTActtgaaggaagaaagaacagcagtctatata----------taaaatatggaTAATGTGTCAATCAAAACT---GGTTTTCCTGGAGTATGTTATGTTAATATGAGCCATATTGctctattgcttttttatttttaaacacagcTTGATTTGGTAGTTTGGCagcgttgttttttttttttttttttttctctcttttctcccacTT-AACAAAGACAGAGCCTTCAAACTCTTTTCATAGCAAGGCT-GGAAATTCtgccaggttaaaaaaaaaaaaaaagaaaggaaaaaaaaaaaaaaaaaaagaaatgttattgaAAACCTTTCTCCCCTTATAGGCCCGTTTTGACAGGAAATCTTTGAGAGGCAGCGGCAGTGAAGTGCCCAGAGATTTCATCTGTCTTCTTTTGCTGCAGGAAATGCTGAGCACAAGGCT-CCTATTAGGCAAATAGAAGAACTACCAAATCCCCTTAACAATCATCGCAGGCCAGCTCCTGGGCTGACAGCTCTCTGTGTCCTAGACTGTCAGGCAGGCCCTGGAACTGAGCATTATATTACTGGGA-CTAGTGGAAAAGTTTCTGACAGTGCTTTACAAAAAAATATTGTAGTGTCTCTGTTTGCTGATTATCCAGCTCTATAAATTTTGCACGGGCTAATCGGAATAAGATCTGCTATAGCAAGGGGGCATTAATTTGTAgtgcttttgcttatttttctccaTAGTTTTGACATAAagttattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttcctatcatcttgtgtGATTGGTTAAATTTCAG----CAATCATTAGTAGCTGTATTATAATATCCAATAGCatgaaaatttt--gtattttgttt-tgttaattttttt--gacagATGCCAAATCTAAATTTCAAATAAACctttcaaaaaccaaaatgccAGCTTGTAGCAATACTAAAGAAGTTTACAAAGTCTAAGCAGATgtccctttaaaaataattaggattTGGTAGAACTGGTAAAGTTCACAGTGGaagcttaaaaacaaacaaacaaacaaacaaaaaacccgaaaaacagaattttagcaG-ACATACTTATGtcagtttgtatttgt-ttttactttcctttccttccagaattatttttaatgaagacaTTACACtttacaaaaaacaacaaaggcTGAATTTAGGAGTGTAAATCAATTTGTGAACAATCTTAAC-AAAAATTTGATAGAACGTAAACTATGCGTGGCATGCTACTATGTGTG-acttaataaaaatttagatCTAAACA

a score=38055
s chr3           148002365 2900 + 160039680 CCCCCAAATTACTGCACTGGGACTGAACTCCTATGAAGGGGCTG-----AGGCGAAGTCT--------TAACCAAATAAGAGAAGA-------------AATGAATTAACAGTTGCCTTCTT-GAATGCT-CTCTGTGGCTTTGGCTTCCCT-------Tgacactcaagacagcattcctggtctgctcttattatattagcaataagacgtcatccccggaatcaggggctggtcttcaccaggcaccagccct-ttcataccttcatttgagacttcccaggctcca----------aatgaagtttgcgtgctttttaatcagccacctagtcagtagtctttGGC----ACCACGTGCCCAGAAGGATAAAGCCAACTTGTGACATGACAAGGGACAGCATTCACCAGGAATGTGGTCCTCTTTCAGTAACA-GGTGAGTACAGGTGGGACTAGAAAGGAAAAAGAAAAGCAAGAAGTCCACGGTCCCCTCTGTAGGGAAAGGCTGGGTTTATTAAAGGTCAACCAGCTCCTTGACTGTAGAACTTCTTGTGTGCAAAATAA-----------------------------------------------TTTCAGGAGGGGACTATAAAATGCTAGGATC-CAATTTGCAAAATGTCTGTGTTGCAGAAAAATGGCAAAAC---GGCATACCCAA--CAATCTACTGTCAGAATGTGTTTAACCATCTTGACTTCCTGGCCTCTCTCTAAGCAACT---AGTTCAAATGTTGCTCATGGCCGGGCCAGTA------ACTGTTTTCTGTTGCCACATTTAAACACTGGAAGCAAACACATCAAAA-TGCTGGGTATCTTTTTATCCCTTACCAATGTCCTTGCTCCCTGGTAAAGAAACCATTGGAATGTTGCCATTTTAATTAGGCTTAGCTACAAAAAAAAGCCTTAATCTGCCATTGAGATGTATATTTGCCTGTTTTATGAAAGCGCAGTGGATAGAGAAAGGTGGCTTCCCATTTGCAGGAATTATGTAATAGCGCAGATAAACCTCTTCCAAGGGAGTTTCACAATTTACAGCAAATTTGAAACATAATTGATGATTTTGAAACTCTTGCCAAAATAAAGAACAATTT--TTATGTTATTTTTAATAACCAGATATTTTTCTATCATTATTAACGTGATTATTTCTTGGAATACTTTTAGTTAATACAGTGTTTTGTGATTAAAAGGATTTCCCAGTTGTATACCCAATACTTTTCTTAGAA----------CAAACAGCACTAGTTC----TTAAAGAAGCCCCATACTGA--------CTGACATGCG------ATTAGCCTGCT--AGCAGTGCA---CTGACTTTTAGTCTAAGAAAATGATGGTGAAGACTTTGAAAATTTAAGATACTTTTTCCTCTTGT--AATTTCTTAAGAATTAATTGTATATACTTTTGTTCCAAACGATTCTGGG----------TTTGTAGAATTGTTTTGGCCAAAAGATTCATTTTGACATAATTCATTTCTAAAGAAAGAAAAAATCATGAACGTGCATGATTATCCTGCATGGGGCTTCAGagctgggcacggtgccacagctttaatgccagcccttgggaggcagaggcaggaggatctttctgcctttgagtctaacctggactacagagctggttccgaggcagccaaagttgcctagtgagaccctgCTTGTAAGCCCAATGCTTAGCCTGAAGATCTGATAAATGTGTACATTTAGTACCTGTTTTATAGAATGATATGCTCAGGGATTGGTTCGTCTATGGATGTCTTAGAAATTGCATGTAgggactggagaaatggctcagtggttgaaagtgctgatagctcttacagaggatctaagctctatgcccagtactaccattaggcagatcataacgccttgtaactccagtgcagggggatctgatgccctctactggcctcattaggtgtttgcatgtgcatctctgtgcacacaATCAGAAACCAAACCAAACCAACAACAAAACCCAACAAACTTGAATAATTAAAAATAACAAAAGGCATACAGGTGTAGAAAGAAAGAGGCAAGGACCAGAATCGTCATGGTGGCAGTTaaacctgtctgcccatcatagcctgattgattttagaaaagccccagacctctctgagcctcggcttcctcaGGCAGGGAAGGCAAAAACAGACAGACAAATAGAATATAAACAGACAAGGATCACCAGCTCCTCAGAAAGGTGGTTTTAGAGACCAAGGGGGTTAA-CATTCAGGAAGGGCTTCAGATATTGCTCCACACGTAGTTACTATTAAATAGACTGGCTTTCCCTCCCCAGAT-------------------------------ATAAAAATTGCTTCACATTGTCCCCTTTCACCTTACCCATGTTGGCTCAGCTCCCGTTTT-TGACTGAGGTAGCTGTCACTGGCTGTTATCACTGAGAGCTTTGAATGAGTGGCATGGGTCCTGTGCTGGGAACGGCCAACTCTGTAGGGCCTTTAACTGTGAGTCTGCTGCGGATGCTTGATCTGAAAGTACCAAGA--CTCCAGGAAAGT----TGGCATAA---TACTATGTTCAACTTTTCAGCAAATTAACAAGTCCATGGTTAATCTTTCTTCTAAAATAGTATTAGGTGAAACCATCAGGGG---------------GCTAGTTTTCTACCAATGTGCCTATG-ACAAATGCCTGAATTGCCAAAAGAAAAAAAAAATCTCCTCACACAGTGCCTCTCTAACCTGACTCTCACTTATAAAAACATAGTCCTGGACACTTAC-------TCTTTTCCTTATTAACTATACACTATACATG------TGaaaaatattttttcttaaatttataaaaCGAGCCAGTT-ACTTGAGACTTCTGTTTCTCATTAAAGTGAAACACT--GCAGGGGAGTGCTTAAAATAGTG-----ATCAGCCCTTGAAGTACGAGGTGGAAGATTCCTAGGTGGAAGCAAGGCTGGCTTCTTGTTTTTGTCCTTACCCACACACTCCATGCCTTCATTCCCAAGTATCATGCAATGAGCTCCATCAACCTACCAA
s HiC_scaffold_1 134712757 2678 + 233722169 CCCCAAAATTCATGTGCTGAAATTTAATTCCCATTGTGGAGGTATTAAAAGATGAGGTTTGTGGAGAGTGATTAAATCAGGGAGGGCAACACTCATGGGGATGAATT-----TTGCCTTTGTAGGAGACTGCACAGAGACATTGCCTTCCTTGCTTTTATAATATGTGAGGACACCTTGTTGATCCTATCTGGAAAATGCAGCAATA-GCCACCATCTT-GGTAGTGCAGACTGATCCTCAGCAAACATCTCACCTGCTGTTGCCTTGATCTCAGACTCCCCAGTCTCcagaactttaagaaataaatttctgt---tgtttatatgttacctattt-ttaatatttaattattgcCACATAAATAGATTAACAATG-----TTCTAAAATGTCAAAGAAC--CATCTGCCAGGGCAACTATTCCCAAGTGGTATTAAGGTGAAAGTAGTTGATAC----AGAGAAAGAACCCAGAGGGATTTCCAAAGTCACTGGGTTAGGGAGATGCTGGACTAATTAAAGTTGAACTATTTTCTTTCCTGTGGAACTTCTGTTatgttaaacaaacaaacaaacccaaatgcaaacaaacaaacaaacaaacaaacacacattaCAAGGGAGGACTACTC--TGCCAGGGACACAATTTGAGGAA-GTCTATGATGC-TAAAAATgcagaagcagaggcagagggaAGACAAGGGAAAGTCAAAATGCATTTAACTGCTCTGATTACTTGAACTATTTTTGATAAACTTCTACCACCAGTGTTGCTTGTAGCTTAGCCAGTATCAATTCCTGTTTTCTGTTGCCACATTTAAACACTGGAAACCAATTCATCAAAAATGCTTAGTATCTTTTTATCCCTTACAGATGTCCTTGCTTCCTGGTAAAGAAACCATTGGAATGGTGCCATTTTAATTAGGCTTAGCTAC--AAAAAAGCCTTAATCTGCCATTGAGATGTATATTTGCCTGTTTTATTAAAGCTTGGAAGA-AGAGAAAGGTGGTGTTCCATTTATAGAAATTATGTAATCATATGGATAAACCTTTTCCAAGATA-TTTTACAA-GTAGAGTGAATTTGAAATATAATTGATGGTTTTGAAGCTCTTGCCAAAATAAAGAacacttttattttgctattttcaataacc--acatttttatatcattattttagtgcttatttCTTGGGTTAGTCTCAAGCACTgtaattttttcatattaaaagaATGTCCCAGTCATATACCAGGTACAtttattagaataaataaaagcaaatatcattagctcttaattaagggaaaatcaAATTGAGAACAAAGCTTTCATAAGAGCATTATTAGCTTGCTTGAATAATGTACCTCTGGTTTTTATTCTAAGTAAATGATTATGGGAACACTTAAAAATAttgatgcttttttttcttataaaatttctt---GATGAATTTTGAATACGTTCCATCAGAATAATGATAGATTTACCAATTTTTGTGGTATTGTTTTAAGTTATTAATTTATTGAG----------TATCTAAAGGAAGAAGAG--CATGAAAGTAAA-----ATGTGTCATGAGTC-----------------------------------------TGGGATCCAATGGC----------------------------------------------TTTCTATGTACCATGAATCACCTAAT-------------------TAATACTTAGCT------------------------------CATCTTTTATAAAAGAATGTGCCTATGAAGTAATCAATGAGTTAATATC------------------------------------ATGGTTAAGAGTGGT---------------------------------------------------------------TTGCAAGAGCAGTGTGGGG-------------------------------------------------------------------CCAGGACAA---GACACCTAGATGCAGTAGTAGTAAGTGATGA-------------------GGGAGTCAAGATAAAGAG--------CTGGACTGT----GTGGAATTAAATCCTGTCTCCACTGCA------GACTGTCCTTGGAAAAGCTTCAAAATTCTTT--GTCTTAGATTACTcactt-gaaaaatcaaaaa--------------------------------gctaTCAACTAC-CTGAAGCCTTATTTTGAAGACGAAATGAGTCAAGGGGCCAGGAGATGCCTAGAATAATGACCAGCAGATGCCTATCATTCAATGCCTTTGCTTAGCCTCTTCaaacttaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatttctaga-gCAGTCTTGTCTCACCTTAAAAATTGCAATTCAGTCACCTTCCTATAAATGGCATGAACGCCTTTGGC---TATTGCTAAAAGCTTCT-----GTAAAATTAGTAAGATACTGGATACAGCAGACTCCATAagattttaaattgtaatttcaC-ATGAGTACAGGATCTGAAAGTACCCAAAATCTCCATGaaagtttaatgaaataaaagtgcTGTGTTTTCCTTCTAAACAAATTAATGAGGTCAtggctaatttttcttttaaaat--tattaaaggaaACTATCATTAAAGCACTGTTACATTCACTGTTTCTTCACCGTTATTTCCATGAATAAGCACctgaatt------aaaaatacaaaatctatGCATACC---TCCTCCCATCCTGAAACATAGTGTTGCAAACATGCGTCAGAACATTTAACATAATGTCTCTCCCCTAGCAATTATTCAGTGTGTCtgcttgtttgcttgcttatttcatttaacatcatAAGGCAAGTCATTGAAATTGAGATTTCATTTAGGTGTTAAAATGAAACACTGGGAAAGGGGTTGTTTAAAATATTGTGATTGTCAGTCACCAAAACA----GTTCAGCATTTCTGGTGTGAGGccaagtt---tctttgtttttgtcttttttagtacTAGATTTACCCCTGTTCCCAGGTGGT---CAGGAGGTTTCTTCAATCTGCTAA

a score=68365
s chr3           148006171 2424 + 160039680 TAACTAAATCAAGATGAATAACATCACCACCCTGGAACTCAGA--------CCTGTATTCGACAGTATTACAGTAATTTCATTACAGCAGAATATACGTC-TTGAATATGTAGGAAACTGGTGTGCTACATTCTCAGCAATGACTGAGA--GTTTTCTAA-----GGCTGAGGCTC-ACAGGGTAAAGTCCCAGCCGGATGACGTACATTTCCTCCGTGCCTGTGACAATCCTCATGGTAGCTCTTGGAACGTTCATCTTTTTTATGATTAGAACAGAGGGTCCAG-TGTCTTGCTGACTAAATTGCTCTCTCTGATGTCTGATGTACCCACCCACCATGTCAGACTCTCTAGTACGAATATGTAGGTCCCTTTAAACCAGTAGGTTGCACATCaaacttcaggtttgaagctctggaagattctcaaggatgagaagttaaagtctccccaggtccaacccaacctttcattcttccag-agggataaatcaattggcacgtacttcactgtgttggggtgtttcagatgggaacttacaaacttagactcctttgctttgtaatgacattaaaggtctcatgtggtatttgatctaagggctggagactgtccttaaaccttgaggcatttctgCTTAT-CTTGACGTCTGCATGAGGGAATGTTTGGACGCTAGTAAGTCAGGCTAGTAAGGTTTTGATCATCCACACAGAATTATGAACCGTAAATCC----TTAGGAAGCACTTGCAGAATTGACATTGTCTATAGCTACAGATTATCCTATATGTTTGTCCAGTGTCTTTTG-------------CCCCATTTTCT-TCTTTTGTAATAAAAAATAAGGACCTTATGTGCTTGTCAGCATTGTAACATGGCATCGTTGATCGGGTGTCTTAGGTTTTGTTGTTGTTTGTACTTTTATTTTGTCTGTGAATGTGTTTGTGTTTGTGCGTGTGTGGGTGCAtgtgtatgtgtgtgtacatgtgcacatgtgcctaaagaagccagaggacaacctcagctctggtatggagtaagttatctccctAGGCTCAGTATCTTGTTTTTTAATAACTTCTGGTGTACTAGCGTAAGACTCAATTTTAGCATCATGACGTGTCACATATTGGAGCCTCTGGTGATGTCTTTGTGTTAAAGACCCCAAAGACTTTTTGAAGACTTCAATAAAGTTATTCTCATTGCCCTGTGCCTGGTTGAGTCTGCCTGGATTACCCCCTGCCCTGAACTATATTATAAACATTCATCTTTGTATTTCAATTTCTGTTTTTTTTTATGCTTTTCTTTTTTATGTTATTACTTTCAACTGCTGCTTC----CTG-CATTGTTCATGATGAGTTGATCTATCTTTCTGGCAAGAGAATAAAGAGGGGGG--AGTGGAAGTGCAGTAGGGGAAGAGGGGAGGATGGAGAAGGGAGACAAATTCTCAAAATCAACATTTAGATGTCA-CCGTGAATGATCTGAGATTAGAGC-TCACGGCAGAAATCACCAAGAACCGCTTAAACCACTTTGTATTGCACATTTGGGATTTTATGTGTTCAAGA------AAAAGCTTTATTCAAGGGTCCATTTTCATTTAACTGTAATGAAGAATCCTGTGGGATCATTGTACCC--AAAATTTCTCCACCCCACTCACAAATCCCA-TATGGAAATTGTCCTGTGGGAAATGGCCATGGAATTATGGGAAAGGATTGAA------------------ACACAATTTTAAAAAATAGTCatata-------tatatatatatatatataCTTC-------TCTGTAATATCAGAATATTTCCTATTGTAAGT-CTTTTGCAGCTCTCCAATGGAGGTGCATTTTCTATTCTGTTTATTTCCTTTATTATGCTCACAGACCTAT-GCAACAGAACCCTTTTCC---ACACACATCTTCATAATTAATTTCATAAGCTCCTTGCAGCCTGAGAATTTAATTTTTGTTTTCTTGGAAGTTAATAGCTCTGTAATAGAACAAATACAGGGGGTAGTTCCTGTGAATAGAGATGCCACATTTTTATGCACCTGAATGAATC-TCCCTTTCTGTGTTTAATGTGACCTGTGTTTTCTGCCAGAACTCTTAATATCACCCCATTCATCATTCTGTTCCCATGGG-TCCTTTGTTTATCCC-----CACCCCATCCCCAAAC-------------TCATTCACTGATAAAGTATA-----------------------ATTTTATTTC------CCTCATTTTAGGTTACATAATTTTTGGAAAGAGATATAGTAAAGAACCTTCAATCCCTGTTTGATTTGAATGTTGACTTCTAAAATAGGA---TGCAATGTAAAGTTTCAGATTCTAC-----AATGGCTGTCACACAGGGAGGTAGATACATGCATG-------CACACTCTTGTGGGACACACCTCTGCTGTCTCATTGA----GCTTTGCTCTTGATA-CTGGACCAATGCCAAACA--CAGCACAT----AGCAAATGTTCATTGAATAACCGAAAGC---ACCTAGTGATTCCTATGCAGTTCTGCA
s HiC_scaffold_1 134717770 2370 + 233722169 TAATTAAATTAAGATTAATAAGATCATTGTTctttgatttgaaaaaaatcacgTGCATTCAACAGGCTCTTTCAAGTTTAAGCAC-GTACCATATGCACAGCTATGTAAGTGggaa---------------tcttagaaataattgtgttTGTATCCTAAACTGAGGCGGAAGCTCCATAAAAGAAAATCTCAGCAATGTTACTTGCTGTAACTCAGTGCCTATCAAAATTCTTGTGGTAGCTCTTGGAAAGATCACCTTTTTTATGATTAGAACGGGGAATATAGGTGTCTTGCTGACTAAATTGCTCTTTCTGATGTCTGATGTACCCACCCACTATGTCAGACTCTCCGGTACTAATATGTAGGTCCCTTTAAACCAGTAGGTTATACATCAAACTTCAGGTTTGAAGCTCTGGAAGATTCTCTAGGATCACAGGTTAAAATCTCACCAGGTCCAATGCAACCTTTCATTCTTCTAGGAGGGATAAATCAACCAGCACGTACTTCACTGTGTTAGGGTGTTTCAGATCAGAACTTATAAACTTAGACTTCTTTGCTTTGTAATGACATTAAAGAGCTCATGGGGTGTTTGTTCTAAGGTTTGGAGACCGTCCTCAAGCCTTGAGTAATTTTTGCTTGTACTTAAAGTCTGCACTAAGGGCTGCTTGAACATTCTTA---TATGTTATTAAGGTTTTGTGTA-CCttattaaattatgaaaattaaattcatCTTTATGATGTACTTGCAAAGTTAACAT---CTGGAACTAGAGATTACAGTGTATAT------GGTATGATTTGAACAACTGCGCCGTCCCATTTTTTATCTCTTGTGTTTTACAG-AAGAGTTTTATGCACTTTTCAgcaatatggcataaaa-------------------------------------------------------attggGCCTGGGTCTGTG------------------------------------------------------------------------------------------------------------------TTTTTAATAAGCCGTGGACTACTGGTGTGAGATTCAATTTTATAGTCATGACATGCAACACAATTAGGCTCCCAATGGCTTCTTTGTGTCCAAGGCCCCAAAGACTTTTTGAGGACTTTAATATAGTTACTCTCATTGCCCTGGGTCTGATGGAATCTGTTTTGATTACCCCCTGCCCTGTTCTATATTACAGACATTTATCTTTGTATATCAATTtc----actttttatgatt---tttaacatgtttttgtttttaactgccACTTCACTTCTACCATTGCTTGAGATTAGTTAATTTGTCTTTCcggcaaataaataaacaaggagGAAAGTGAAGGGGTAACTGGGGAGTGTGTGAGCATGGGTACAGGAGACAAAGTCTCATAATCAGCATTCAGATGTCGTCCCTTGATGAGCTGAGTTTATAGTATTTTTGTGGAAATCCCCAAGAGCCATCCATAACATTTTGTGTCACGTGttgttgcttcatttttttctcgcTTCTTTGAAAGCcac-ttagaaaatttattttcatgtcatCATGAAATGTGATCATTTGG---CTTTCTATCAGGAAGATTTCCATAGTGCATGTACAAGTCCCGTTAGGGAGGTGTTCCTGCTACATATCTACATAGAATTGTGGGCAggcatagaaaataaaacatttctctttACAGAGTGTTTGAAATTACTTGAGCAGTTTCCTTCCCTGTGTAACTATCAACTTCACTCCATCCTAAAGCATCTGAGTATTTCTtcctaaaaatgtttttacaagTACCAACTGGAGATGCTCCttccattctttct-cttcctttaacaACCTTGAAGATCTGTAGAAacacttcctctttcctcttcacACGTCATCA----TAATTCCATAAGCTTCTCCCGGCtgaatagtttaatttttattttc-aagaagttaATAGCTTTGTAATAGAACAAATGCAAGAAGTGGTTCCTCTGTATGGAGACgccacatttttatatattccaaTGAATCTTCCCTTCCTATGTTTAGTGTGACCTATGTTCTCTGCCAGAAATTTTAATATCATCTCATTCATCATTCAGCTTGCTCAGTCTCTTTTGTCTATCTTGGTTATTCCCCCTCCCCAATCACTTATAGATAGATCATTTATAGATCAATTATAACGGTAGTGTTTCCttatgtctgattttattttattgtatcttattttatttta------gtttggaaAACAGTGCAATCAAGATGAGT--ATAATTATTCCATGTGAATATTTGTTACTAAATAAGTATATTGCAGTAAAACACTTAGAATTTCATGGTTGGATAAACATCACACtgatgtatacacacacacaggaaacagATACACTCCCTAAGAAAAAGACTCT-TTATCTCAtttgtactgtttttctttggGGGCCTACATCAATGTCAGGCATGTAGCACATGAGCAAGAAATACTTGctgaataaatgaaattataatttatcAATTCTTGTATGCTTCTGTA

a score=57985
s chr3           148012350 6212 + 160039680 [encoded data, 6888 characters]
s HiC_scaffold_1 134724768 5935 + 233722169 [encoded data, 6888 characters]

a score=4080
s chr3           148028200 149 + 160039680 ctcgaccagagagcgtagcaCATTTTCTCTTTCTATGTATGAACTGACCGTGACAAAATTTCTTGACCTATTTGTCTGATAGAAGTTCATGATATCCTCCTTTCAAAGAGGGTTTATTCC-TTACCTAGAGGAAGG-ATGCTATGGAGAAT
s HiC_scaffold_1 176880640 149 + 233722169 CCCAAACACAGGTCATAGAAACTAATTTTTTCCTGTCTTGGAACCGCCCATAAAGAAATTCTTTGACTTACCTGTCTGGTAGTAGATGATAAGATCCCACTGTAAAAGGGATCCTGTGCCATTTCCAGGAGGAAGGAATGC--TGAAGAAT

a score=126438
s chr3           148030652 3867 + 160039680 gctcTGGGTTTTATTGCTGTTTTAAG-TAAAAATAAGGGGAAAACTTCAAACTCATAATCAAAGAAATAATGTGT-GTTTTTGAATCATTTAC--TTCCAATACTGCAGAAGAGTAACTATCAA---------AGTGAC--TTTAAATTAAGGAGAGAGAGA-GAGAAAAAAAACTTCCTTTCAGAAGCAAGCTTACAGTCTCCATCACAGTGACACATGAACCAAGGCAGGAAGTAGGATGCATGT---CATTTCTCTTCCCATGCTA-----CTAAAGGAATGAGTATGGGGTTATCTGGTGACAGCCCAG---AGACTGTGGCTTTATAAACTATGTAGACAGAACACAAAGACAATTTGGGAAACAGACGTGAAAAGAGTCTAGTAGAGATTAGAGATTGTCTGTCCTTAGTTAGATGTGGATGTTGGTGGAGAATGGAGGGGAGCCTACTGTCTCGCAGTTTAAAAACATCATTCATTATGTTGAACATGATC---GAATGATCC-TGGCAAGAGTGAAGCCAacaaagatggatacagtgcattcctgccttcaaggagcttaGATTGGTGAGTTGATAATTTGAATAAAAGATTGTTGAAGTGGTTATAAAGTTGGTCTCTCAAATAGGATTTTATTAAATTTGCCTGGAGCATTTCTACCTAGCCCCTTGCAAATGGAAGAGGTTTCTCCTTTCTTTCCAtgcgtgtgcatgtgtatcagtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTCAATTCAAATGAGAAACTGAAGTT------GATAAACCTGATTCAATAGAAAGAGCAAAATCGAACTAGTTACATTGCAGTAATATGACA-AGCTACTAAAAGGGAATATTTTCCAAAGACTTGGAGCAAAAAAAAAAAAAAATGATATAAAATAGTAATTCAGGCTCTTGCAGAGTTAATCTCCAAACCATGCACCTCCGAGTCAAGCCAGGGCTTTGCACTGCTGCCAT-GTCAGGGTCAGGTTTCTTT-GTGTGTAG----GACAGATGCCCTTCAATGAGTGGGTCCTTCTACTGCCTATGGGAAGACAAACCAAAATAATGAGAA-------GGGAGGGATGGGGCATGTTTAATTTTTACAGCAAACCAATTTTCATAAG---------------GAAAAATCA----GAAATGAAGATGCACACCTGGTATTAGAGGCATCAAAAAGAGATCTGTTGTTCCCGTGAACAATTACCATAATTTCAATTGTTTCTTGCTGGCAGCGGGGAGGTCGTTTTCTCACAACCTCTGCTTCCCTTT--------GCAATCTTACAGTGTCGTTTATTGCCATTCCTACCTGAGGATACGTTTCACATTGGGAAGCCTCCTTTTGCTTTTAGTAAAATACAGTCTTTGTCTTAGGAAAATGCTGTGTTTGGGATATATTCATAATAAGGtatgtgtgtgtgtgcgcgcgcgcgcgcacgcccgcacgcatgtgtggaatcagaagTAGCATTCATAAATGAAATCTAGCCGTACACTCCATCATTAGAAAAGAAAAAAAAAAAAAACCCTTTCATGCATCATGGAACTGATGCTCTGGGAAAATTCCACGACAAATTTTCACCCATTGTTTTCATAGCAATCACTGCATCGTGAAATTAAAACTATTTCAATACTAAGTGGTTCTAAAACAATTACCCAGCAATGAAATTACTATATATTTCCTAGAAGAAGCAGGTTGTACGGTAGGTACAGTTACGTGAAAAATGGCTAACCTTTCG-ATTCAGCTCCACAGCTGCTTTCCTCAAATTCGCGTTTTAATTTCTTCCATTGGTGCACGGAGACCTAACTGGAGGCTGCGCTGAGGGTCTTGTGTGCGGGCAGGTGGACA-GGTTCCTCTTGATCCAAAACAGACCTGACCCCTCTTCCTACCCTGCTTTCCCTCTCCTGTG--TGTGTGTTCCAGAACAGCCTT-CAAAAGAGAGTCCCAAATTGCACCGACGTCCCAAATCACAGGATTAATGTGTCTACGAACAGACCTCTTATGCTTCCAAAATGAACTGCTCCTTGCTAATTTCTCTTCAAGACACCAGCTTAATTGCATTTTAAACAAATGGGCTGCTTTGCTGGCCAACTTTTAAATGAGATAACAGCAATGTTCACTCTCCAGCCGTGAAGGGTGCCTCGCAGTAGATTCAAAACTCTGTTCAATAACAGGTTTAATCTCACACCAGCAGATTTACTGCAGAATAAACTGCCACTGAGATCATAATTAGTAAAACAACAACAACGAAAACCCAGCCTACTAAATATTATTTTCCAAAGCAGCAGGCAACATTTTAGCGGAAATTTCCAGCTCCGTTCTTTGTGTGTTTTATTGATTTTATGTATGATATTGGGAATTCAAGCTATGATTTAAGGTAATGTCCTTTTATTGATCATGGAAGCGGTTGTTTCACTATGCAGCATCAAAGCCGAGCTCTCATGTTCAGAGTCTGTGACATGCACACTCGGGAGATGACAGTACGGCTTGTTTTTAATTTTTTTTTGTTTCTACCATTGTTATTTTCTA-AAAGCATATTCACTGCGAGCATACCACCACCACCACAACAAAACAGGA---GGGATTTCAAAGCAATCTTCTCATAATTTTCTTTGTTGCAGAT----------GATTGTGATTCAGTGAAAACCTTGTTCAACAAACAGATGTTGCACAGGGCAGGCTCTGCCCACTGTATCTAAACAAATATTAATGAGGTAATAGGAGAGATTACAGGGAAACGAGGGCTCACTATGTACTTAGCATCACAGACACAACTCTGCACCCTTCTGACATCTC---------TTACACAACAGTAAGATGC-ATCATAATGGCATACCAAGGGACTTGTTTTTCATAATTGTCTCAAATACACGTGCAAAAAATGTGTGCTCCATGATTTCAAAAGAGGTTTTATTGTAAGCAGAGGTGAACAAAAGCTTTCAAGTTCAAGTGGAGGAAGACGGCTCTAGATATT---AAACCAAACAAAACAAAACAATAAAACCTGTCTCTCCATACCACGAACAGATTTTA-GGAAATTTAATGTTGTTTTGTATGTGCATAAATATACACTATGTG-ATAGCAAAGTAAAGAGATCACA-AAGAAGGTTCACGGATA-----GCAGTGTGCTT---CTAACAGTTTCCAAACCA----AAGTTGTCTTTAGCAGGAATGTGAGCTCGCCTCCCATCACTCAAACACACAGTAATGGCGTGTGAGGCTTGCTTTATTTCTGACATTAACCTTTTGATAATGAGTGTTACATCAAATGGAATTTGAGGAATCTAATGGTACTGCTGTGCGGTTTATTTTTGTAAGACCCCCAAAGCAAATTAAACCTCAGTGAATCAGACTTCATATTCACAGACAATAGCAGTTTTAAGAATGAACTTAAAAAGTACCAATTTACCAATAAAGCTTTTAATACTATAGTTTTTCTAGGTGATGTGTCAA--AAATTTTACTCATTTTTTTCCTTTCTTTTAAATT-------------------------------AATTTTTGGGATAAGAAAAGG----------AAGGGAAAGAAAGCCCTTGGTCTCTGTCTCCAGCTAATTATCCTGGTATTTTTAAGTCACAGATCCAGAGAATTTTAGAGGTCTGTGGCCACAGG--------AGATTCCATAGTTCACAAAAGAGGAATGCTGCATCCGGGAATATTGCTTAATAAAGTTGAGAGCACATTTTTCACTTGCTTCATCTGCTCGGTGTCA--AGTGTTTGTTCCTTTATCATACACCTAAGACTCACCACAGAAAACACTCAGATGTGTGAGATTT---AGTCATGGCTCTTAG----GGACACCCTGGAAACTGGGTCTAAAGAATGGCCATCTGATAGATCCTGTGCAAAATTCTCTTGGGTGTTCCTGAAACGTCAAACATTTAGCCTAAGTCCTGCCTGAA--CAAGTGCTTTCATCAGTAACT
s HiC_scaffold_1 134737510 3786 + 233722169 GCTTTCGTGTTaattactgtttaaaaataaaaatgagg---------caaagtc-----caaataaataattttcagccTTTTAACAAATTGCATTTGCAGTGTTGTGGGTGATTTACATTCGATTTAGAATCAGTGACATTTTGAATTCAGAGAAGAGCTACTGGAGAAACAACTTCC------------------AGCTTCTGGTGCAGCAAGACA--AACCAAAGCAAGCAAAGAGGAGCAAGTTCCCGGATGTGATAACATGGTAGAGACCCAGGCAAATGTGTAGGGGATT-TGGGAGAATAGGCCAATTCAGG--ATGACTTTCCaggagataaaaacaaacaaccagTGAATGATAGCAATGAGAGACAAAATAGAATTAGCAGA--TCAGAGGA---------------AAGTGCAGTTGGgagtaaaaaataaac---agcacacatttttacagtt--aaaaattcatttattatatgcAAAATGACCCAGGACCCATCCGTGGATAGGGTTAGACTGACAGAGATGAATGCGGTATGTCCCTGCCTTCAAGGAGCTTAGGCAGGTTAGCTgataatttgaataaaatattgttGGAGTGGCTACAATCTCTGCATCTTGAGCAGGAGTTTATTAAATCCGCCCGAGGCACTTCTACCTA-CCCCCTGAGAAGCTGAGCTGTGtcttctctctcccccttc---------------------------------------------------------------tctGTGTTTCCTCTCACCCTCG---CTGGTGTTTATAGTGATCGCCCCGATTCATTAGaaacagtaaaattaaattaGTGCACTCTGAGAAAGATGACAGAGAAAC--AAAGGGTATCTTTTAGAAAGATTTGTATCAAAAT----------TGATTTTAAGAAG-AGCTGTGGCTCTTACAGAGTTAATCTGCAA-TAATATCTCTCCAAGTCAGCTGAGAGCTCTACAAAGCTGAAATTGTATGTGT---GCTTCTTCAGCATATAGCGTTGATTGAAACATGAAAATGAGCAGTTTATTCTGCTCCCTTTGGGGGGATAGACCCAAAAATTTAGGATGGTTTTGGGAGAAATGGTGCCTGTTTAATTTT-ATAGCAT-CCAAATATCCTAAATGGCAGTCACTTTATGAAACATCAAGCAGAAGTGACAACAAACACCTGATATTGGAGAGATCAAAAA---ATCT-------------ACAATTACTATAATTTAGATTGTTTCTTGCTTGAATCATCTACATAATTACCTC-CAAActctgcttcatttttaaaaaaaaaaatttctcgctgtagtttttc----ttctcagctaaagaaa----taatatttgtgaagctcctttatttttctgagaaataaaatCTGTGTATTTGTAAAATACTGTATTTGG-ATATACTTCCAAAAACAT-----------------------CACTTTTCTTC---------TAGAACTAGGAGCAGTAGTCATAAA-GAAATT--GCAATATATACCggct------aagaaaaaataaaaaag---ttttctgCTTCACATAACTCATGTTCTAGGAAA-TTTCATGACGAATATTCACCCATTGTTTTTGTAGTAATCATTGCATCGTGAAATTAAAACAGACTCAGGCCtgagcatttttaaaacaattacccAGCAGTGAAATtactgtatattttcttctaaaagcagGTTGTAGCATACGTACATTTATGTGAAAAATGGCCGACCTTTTTCATTCAGTTC---AGCAACATTCATTaaacttgctttttaatttcttccattgGTGCATGCAAA----ATGCAAGGCTGTGTTGAAGGTTTTGGGTGTGAGGATGTGTACATGGTTCCTTTTGATGGAGAACAGAACTGACCCTTCTCCTCACCCAGCTTTCCC-CTTTTGTGCTTGTGTGTTCCA-AACAGCCTTTCAGAACAGAGTCCCAAATTACAACGACATCCCAAATCGCAGGATTAATGTGTCTACGAACAGACCTCTTATGCCTCCAAAATGAAGTACTCCTTGCTAATTTCTCTTCAAGACACCAGCTTAATTGCATTTTAAACAAATGGGCTGCTTTGCTGGCCAACTTTTAAATGAGATAACAGCAATGTTCACTCTCCAGCAGTGATGAGTGCCTTGCAGTAGATTCAAAACTCTGTTCAATAACAGGTTTAATCTCACACCAGCAGATTTACTGCAGAATAAACTGCCACTGAGATCATAATTAGTAAAACAACATACAAAAAAATCCAACCtactaaatattattttccaaagcAGCAGGCAATGTTTTAGTGGAAAATTTCAGTCctgttctttgtgtgttttattgattttatgtaTGATATTGGGAATTCATGCTATGATTTAAGGTAATGTTC-TTTATCGATCACATAAGCAGTTGTTTAGCTATCCGGTAACAAAATGATACTCCCATTCACAGAATATGTGACATACACAGCCTGGAGACTACAGTGCTACTC-TCTTTAATATTTat---cccccacccttttttttttccctgaaccAAAGTCTCTGCtgg------aaaacaacagcaaaaaaacagCATTTGTGCTTTAGAGACAATCttctcataattttctttgttgCAGCTATTAGTGGCCAATTGTGAATCAGTGAAAACCCTGCTCAACAAACAGATGTGAGAAAGTATATTCTCTGCTTGCTGCAtctaaacaaatattaatgaggTAATTGGaactattaagaaaaaaagagtgcTTAGTATATATTTATTGTCTCATATATGGCACCATATTCCCCcaaaatttctcatttatattACACAATAGTAAGATATGGTTATAATGATATACCAAGGGACACATTTTTCATAATTGTCTCAAATATTTGTGCAAACACTAT-TATTACATAATTCTAAAAGA-GCTTGCCTGCAAACAAGGATGAATAAAAGCTtttgaacagaaaaagaggaaattcaTGATAGATATTTTAAAACC------------------TAATTTGTTTGTATATACC-TATATAGATTTTGTGAAAATCTTAGGGTATTGTGGATGTG--TAAATACAAATTAAGTGTGTGGTAGAAAAAAGCTGTTAAACAAAAAGGCTCTTAAAAATTTGGGCAGTGAGCTTCTCCTGACACTTTTCAAACAGAAATAAGTTGTCCTTAGTAGGAGCACTAG-TTACTTCTCACCACTCAAACATGTAGCACCAGCACGTGAGACCAGCTTTATTTCTGGTATTAACCTTTTGATAATGAGTGCTACATCGATTGGGAATGGAGGCATCTAATGGTACTGCTgtgcagtttatttttttaagacccCCAAAGCAAATTAAACTTCAGTGTATCAGGCATCATATTCACAGACAATagcaattttaagaa-aaacttaaaaa-taccattttgcaaataaaacttttaatgcCATAGGTTTTCTGagagatgattcaaagaaaaattactcacttttgtc--ttcctttaagttgtcCCTAATTGGTACTgaatctgaaaattaaaagtttaaaaaaaaggaaaggattgaacaataaggaaaaaaaatgcttctAGTTCTATCTCTGACTAATTATCATAGCATTTCTAAATCAGAGATCCAAAGTATTTTAGAAGTAAAAGGCCATAGGAATGACCTAGTTCTCATAACTCACAAAGGAGGAAACCAGTGCTCTGAAGAGTAATGTGAGAAGCCCAAGGACACATTCCTCATTTATGCCATCCATTATATAGAAGCAGTGTTTATTCTTTTATCACATGCTTAATAAGTTTCCTAGTACATACTCTGTTCCAACAGATTTCAAAGTTGTTGCCCCTAACCGTGCACACTGTAGAACCTCATCC--AAGTATGGTCACCTGCTAGCTCTTGGGGAAGCTGCATATGTCTTTTCTTGTCATTTCAG--TTGTAACCTAAATGCTGCTAGGGCCCACATTTTTTCACCAGTAACT

a score=83767
s chr3           148059932 2824 + 160039680 TTGCTCTTGTATCTTGGCCTTTCTTACAATCATTTG-GTTACATATCTTGTCACTTTTCAACTAGCAGCATATCTGTTCT-CAGTAATCAGACATATTTCTCACTGTTCTATCTATGTCCCTAAATTTTGGTTCCTTGTCTCAGATGCCTCTAGTTTCTTGTCATTTTACAGATTATGTTTCTTTTTTTCTTCTAAAAATTG-GACAGACTTCCAAGTGTTATCATATTT------AGAGACAATATCAAGTCTAGAGAACAAATAAGAGTCAACCAAA-TTACCTTTACATAAGGATACTGTACCAAGTATTAAAATATTAGTGGCTCAGACATGTACATGTGCTT-TTTCAGGAACA-------------GAGCCCTGACAGCTCAACCtgtttctttgttcgcactatcaatcctctgttttaaaagtcagtttctcagcagtgaaaagtctctctgtgttcaaacttggcagacagtctgacactccagagcggagctttCCTCTCTGTGAGTTTAGAGGGAAAGCCATTAGTTTGTTTTTAAGATCTTAGCAGGAAGAAAGGAGAAGGCATGCCAGCAGGGATGTTTTCAATGCTTTTTATTGCTAGAAAATGGAATAAGCAGTTGGCTTTATTTTAAACAATATGAAAACATGAAAACTAACTTTGGACTTCTGAGGGTTCATTCTCATGTATGATACTATCGGTGCACCTAATCAATTTTAATTTTCTTTCTTTTAATGTTAAGAGTATATTCTGGCCCATGCACAGTTGTTCATTTTCTTCAGAAATTTCATAAGGATTTTTAGTATGAAAAGGTATTGAGCATGCAAGGTTCAGTGGATGAAAAGCTCCCCAAGCATGCATTGACAAGGGGGACTGGAGCTGTTACAGTTTGTTGTGTCAATGATTTGCAAATAATGGGTCTCTGGGAGACTTTTAAACTACAGCTTTCACTCCAGGCCACAGTGCTTTGTAGGGTGAGCTGAGCTTCTCTGAGGCTTGGCACTCTTCGGTGTGCCTTAGGCAGGGGCTCTAATACTTCCATTGAGATTGTAACAGCTGGCCATTACAATCAATCTCCATGACATATTTTTTCTTGCATTTTTCTTTTAATAAAATAACAAAAAAAGCACACCGCCAAAAGACAATATTAAAGTTGTAACTTAAGCCTACTACAGTGAAGAGCTTTTACCGAATGCATGGAAGGTCATACATCAAGTCATTACAGTGCCATGTTTAGGCTGTACATGGCTGAAGGTATTGATACAAGAGTGCCTCATTTTTAATATGAATGCACTTAAGTCTA-TGAAATGCCACAATAATAACTTGAATGACATATGAATTTGGGAAATGTG--GTGGCAAGAACAC------------AAAGAGCACACCAG---TCCGTGAAACTGTAAAAT-------ATTCCATGTTCTAGTTTGTACATACACCCCCCTCTTCTTATCATTAAGTAAATTCAGCTTTAGCTGATCAAACTGTCTAACTCAGCATTCTTATTATTAATCTAGTGTTCTGGAGCTTAGGTAATCAAGACTTTTAATCTCA-AACTAATATCTCGCAGGATTGAATGGCCTGGACGAGGTCCT--TTGAT-GATGATA--TAGGGTTGAACCATGAAACTAATGGC--------------TCAACATTTTAG-----------AAAGTATATGTCAGAAAGCTATC-------ATTTCCCTCTA----------------GGTATAATTTCACCTGGTTAAGGAACTGGTCATTACCAAAAAATATTACTTCTGTTTGCTGGGGGTATATATTAGTGAAG-AGTACAGGTTTTATGTGTAAGAAATCCTGGGTTTAGCTCCCTCCACTAAAATGAAAGAAATAGATTTCTCAAACACATATAAATACATATAGTTAGTATGCTTATGTGTTT----AGtgtctgctg-atttgtcttacctttacgtagagacggtgactccttaacagctgcagccatcttccaagttattagtcgtttgtttgacatcagcaccagagcctggcagagtggccaacaaatagttgttgaatTCGAGGTTATTGTTGAATGACTATTGTGTCTGTGCCAAAATCTCTGTCAACATTTCCAAATAGCTCTGGTTGAAATTGAAAAGGGAACTTGAGAATTATTCATAAAGTGAGGAAGAGCAAGTGCAAATCAGCTGGGAAGCCCATGAGGTGCTGCAAAGTCATCCGCAGACTGTAGAAAAGATGTACAATTAAAAAAAAAAATGAACAAAGGTGCCCTCTGGAGCATGGAACAAACGTGGAATTGGAGATTTGGAAGCAATTATCAGGTTACACCAAGACAAAATCCTATGTAAGATA-----AGATGTTGTAGAACACA---GAATCAGCACTG-----AGAGGGAGTGAGGAGTTCCGGTGCCTGTGATAGGCTGATGAGTAACGTCT------TGTTGG--AGGGGGCAGCAGGCTTGTATGGAGTTAACAGAACCAAGGAG--------------------------------CTGTGCTTTTATTAGCTTCCCTTGTTTCC-------ATTTGTTTGTTTCTCCTCACTTTTTACAGCAG-----CAAGTTGAATCGAGTTTACTAACTAGAAGTTAACAAAGCTGTCAGTTGCATACTGAAAGATGTAAAGGCAACGCGG-GGATATAGAGAGGGAGTATTGAGTGGCAA-TAAAAGTGGGGACGACAGTGAATGTGAAGAATCAGA-CAAGGCCTGCCATTTA----GGATGTGATGGGAAGTGGAATCACCAGGTACACTCTGGAGCAAAAGTGCATAGG---GGCAGACGTG--GTGTGCAGTC-----------------------------------------ATCTTAGGTAAGAGACTAGGGGGGTATGGGCAACGTATGC--TACTGTCATTTTAATTCAATACGTGATAAATGATATTTAGGAAAATCAGAATGGAATTATTTGCTTCCACTGATGTTTCAAAGCTCTCCAACA
s HiC_scaffold_1 134761245 2940 + 233722169 TTTCTTTTGTAGCTCGGCTTTACTT-CAATCATTTTTACTCCGTGTCTTAGAATTTCTCTATTC-CAGCACCCTCATTCTATAGCAGTCTACCACACTGATCACTTTCTGGTCTATCCTCCTAAGACTTTATTGCCCATAGGTGACACTTC-ATCCTCCCATCATCCCCCAAAGCACATTCCTCGCTTTTTCAGATAACTTTTGATAGGCTTGCAAGAGGCCTCACATTTCTCTAAAAGTGTACTAGCAGCTCTGGTAATAAAATAAGGAGCAAACAAGGTTACTTTTCTGTAAGTAGCCAGTAACACGTATGAAAATATTAACAGCTTGAACCTAAATTTGTTCCTCTTTGAGAAACAATATCCCTGCAGTGGCCACTAACAGCTAAGCCTGTTTCTT-GTTTATACTGtgaatcttttgttttaaaagttaatgtcTCATCTATGCAAGTTTTCTTTGTGGTTAAGTCTGGCATAAAAGTTGATACTccagagtgatatttgcttctcCTCAAGTTTAGAGGGAAAGCCATTAGTTT------AAGATCTTAGCAGGAAGAAAGGGGACAGTGTGCCAACAGAGATGTTTCTGGTGCCTTTTATTGCTAGAAAATTGAATAACCACTTGACTATATTTTAAGCAATATAGAAACATGGAAACTTACTTTGGACTT-TGAGGATTCCTTGCTGGATATGATCCCTCCGACCAGTCtaatcaattttaattttcttt--tttaatgtttaaagcgGGTTCTGGCCCATGCGCAGTTgttcattttcttcagaaatttcATAAGGATTTTTAGTATGAAAAGTTATTGAGCGTGTAAGGTTCTGTGGATGAAAAGCTCCCTAAGCATGCATTGACAAGGAGGACCAGGGTTGTTAGAGTTTGTTGTGTCAATGATTTGCAAATAATGGGTCTCTGGGAGATTTTTAAATTGCAGCTTTCACTCCAGGCCATGGTGCTTTTTAGGATGAGCTGAGTTGCTGTGAGGCTTGGCACTCTTCAGCGCACCTTAGGCAGGGGCTCTAATACTTCCATTGAGATCGTAACAGCTGGCCATTACAATCAATCTCAATGACATA-TTTCTcttgcattttttctttgaataaaaaatgaaaaaaacacacT-CAGAAAGACAATATTAAACTTGTAACTTAAACCAATTACCATGAGGTGTTTTCCCTGAATGCCTTGAAGCTCATGAATCAAGTCTTTACAGAGCCCGATTTAAACTACACGTGGTTTACAGTATAGAAACAATCATACCTAGTTTTAAAGA-GGAGGAATTTGAGTTAATTAAAATGGCACCGAAGCAAGATGACTTGCATGTGGAACTGGGAAATGTGAAACAGTCAGTACATGCAGTCTGAATGAAACAGCATAAAGGTATTTCCTGAAACTAAACTATTTTGTAGATTTTAAGTTCAAATTTGT-CAAAATCACCCTTCCATTTCTCACAA---AAACTCAGTTTCAACTGATCAAACTGTCTAACTGAGGATCCCTGAAGTTTATCTTGTATTTTGCCGTTTAGGAAACCAAGGTTTGTTTTTTCATCACTAA---------------GATGGCAGGAGGGAGGTTCTAGTTGGTGGGTGATACGTAGGAATGTCCCATATGTACAACAGCTCAGTCAAGCAAAATCAACATTTTAGAAACACATGGTaaagtctctgtc-----tctgtctctctgtgtctctctctgtctctctctctgcctctgtacAATTTTACTTTATCAAAGCACTGATGGTTATCATTAAGTGCTACTTTCATGGgttgaggacatagctcagcagtgcagcacatgcttagcatgagAGATGT-CTGAGTTCAACctctagcaccaaaacaaaatgaaacaattctTTTCAC-CATAAAAATACAT-------GCATGTTTATGATTTTCAAGAGCGCCAACTGAAGCCGTCTTCATTTTACTTGCAAATTGTGTCTCCTTCACTGC-AAAGctatcttctgtgttattgatcaTTCACT--------------AAGCCTGGCAGAGGGGACACCAAATACTTGCTGAGTTTTCGGTTGTTGTTGAAGGACTGTTGTGCCTATGCCAAAACTTCTGTCAACACTTCCAAACAGCTCTGTTTAAAATTGAAAGGGGAATTTGAGAATTACCCCGAAAGTTAGGGAAAGCCAGCACAAATCAGATG------CTGTTA---TCCACAAAGTCACCAAGAGATTGTATAAACA--GCACAAGT-TAAACGCAAATCAAC-AAGATAACCATAAGAGTGTGAAAT---------AttggaaaaaagtttttaatttgttgGTT------AATTGATGTCCTTCAGAAGGTAGCAAGGGATGgtatagaacaaaaataaaatggaaatatttacagAAGGAATAAAGATTTTCAGTAACTGGAATACACTGATG-GCAACATTTAAATCAAGTcagcaagagaagaaaaggattgca---acttaaaaaaactaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaggatgttttgtggttttacttgctttcttttttcccctaataTATTTCTTTGGTTTTACAAACTGTTACTAGAAAACGGTccagtatattttcttttacaaactGGCAGT----AGAGGAGTCAGTAATGTGTTGACAGACAAGGAGTCCAGTTGACTGATACAAATAGGAAATACTGGCTGGTAAGTAAAGTTGGAGATAACAATGACC-----AAGTCATAGCAGGGGGAAACACTGAACACAGATTTGATGAGAGGAGAATTCACCA-GTGCAT----GGGAGAAAGTATGTAAGAAAGGCTGACGGGCAGAATGAAATATGAAAGACAAAGAGCCTAGGATTTCTTCCAAAGAAATTCAGACTTTGGGGAACGGGTTGGGGAAG-ACAAGCAACTTACTCAATACAGTCAGATT-ATCCAACATATCAAATTTGAC-CTTATAAAATTCATAATAGAGTTACTTGATCCAGTCAATGCTTCAAAGTTTTCtaata

a score=64970
s chr3           148064343 3102 + 160039680 TTCACCTCAGCTTTGATAGTGACCTGTCACAAACA--------------CTTTTACTGATTAAGAGGCTTAACCAATATTTAAAGACGGATG-GCTACATCATCAAAAGT-----CTTCATA--GACCGTGTAGATTTATCTTCAAAATAACCTCACTGTTTGAATTAAACAGTGTTAGAAGTGCCTAACCTCTTAATCTTTACTGTCAGAATT-----CCTATTAAATTACTTCAAAATCAAAGGTTAAATTTCACAAAACAACATTTATCTGGTATAATATTACAGAATAAGAAAAATAAAG-AAACCCAAATCTAGTCTCAAGACAACAGAT-TTTCCTAAAAGCACGTGAGTCT---TGTGCCTCGCCGTGTAGGATAAGAATATTT--AAAGAATGCAGTTTGTCAACTTCAAGCTTTCTTTA----------GGAGAGTAAGATGGCCTTGTTGACCCAGACTCTTTGTTTTAAATCAATGCATGGATGAATCATGCAACGTGACCTTCAAAATGATTGTCAAACATCATTGTCACGAGACAATTACCCCCATTTTAGCACCTTTTCTCACCCTAAGATTTTTAGGTGGAGAGCTTATTTTCTAGAAAAATGCTTAAATAAGACTTGGTCTAGAGAAATCTGTGACTATGTGTTGGCAAGAAAATGTTTTGACAAGTAATACATCAAGGCATGTGGTCACTGGTGATGCATGAATCCAGCCAACAAAACGTTTCATCAGAATGTGTCTTTTGAACCAATGT--CTGTCATAATTCCTAGGCCAAGCGTTGCACGAACAGCTCTTCTCAACATGACTGTCAAGAAAAAAATGATTTTGATTATCATCTTTCCAGATGCAAATGACTAATAAAGTCACACGTTGAAGATCAAAGCTCTCAAAGTCTAGGACA---TTACCCTGGG-----TGAGGGAGGGGTCCTTGAATAGAGACTGAGCCTTTAGATCTGATCAGGTGAATGTACTATCCCACACTA---ACTGCCTAGGCAGCAGACTGACTAATACATCTG-TGGCATTAATGGAAATTAGAAAATGGTATCTTgccgggcagtggtggcgcatgcctttcgtcctagcacttgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacagagtaagttccaggacagccagggctatacagagaaaccctgtctcaaacaaaaaacaaaaCAAAACAAACAAACAAAAGAAAATGGTATCTTACCATATATATTGAGTTAAAATAGAGAATTATCTAAAAGTCTGTTCACCAGGAATCAGGGGCTATTTATTGATTCTGAGCTAAATGTTATAATAATGTATTTGTCTGGGTTTGTAAATTATAGCCTATAGTAATTTCAACTC--ATTTCGTATGATTCTAAATAAGTGAAAAACA--TTTATTCTTGAGATATATGAAATTTCCTGCAAAATAGAATCTCAGA--TTACCAAAGAAATG---ATGTCTTCTTGATAATAATGAATAATATTCCCAGTATATTCAAGTAAACAAGTTTTAAAT----------ATTATTTCATTTTATTACAAAGTCAATAATTTTAAACCATTTGAAAATGTATTTCTTTTAATTCAAGTCACTTTATAAGTATTACAACATATTTTGCACAATTTTGTAATAATATTAATATGCATA---CATTAATGTAAACATGCTTATAAAATATACATATACTCATATGATCAGAGGGCACTCAAATT-------------GTCAGTTGATATTATTTGTGGAAACTAGATTCTGTCTTTCATATTTTCAAAGA----TCCAGTTCTTTGGGTTTAAATCTGCTAAATTGCACTCAGATCAATCTAAGAATAAACAAAGATTTTCTTTACATGGAAGCAAAA--CATTTC-TTTCTGGCTGCTATTTATGAAAGT----------------TATGCAATAAAAACCAAA-GTTTGTA--TACAAAATGTTTTTATTTGTACAACCATGGCAATTGTTTTGAAATGGCTTGAATGTA-TAATCTACTTTTCATGTGAACAAATTAAGGACACTAACCTATAGTCTCCCCTGTAATTACCAAAGATACATTG-TGTCTGAGATCACTGCTTTTCTGATGtataataaataaacataa-agaaaataaaatatttaattaaCCTAATAGCATCCATCAAATTATTTTTGTTCCAATTCAAATGAATTCAAATTAATGACACCAATTTCTGTTTATTCATTCTGCTGCAAGGGTGTTTCATATAATATG-ACTGATTT-GAAAAGGTAATA----TTACCACAACTTCAAACAGTAAGGGGCTGATGAATTCTAATAGATGAGGGTGGCTGGGTGAATCCGAGGTTAGAAAAATGCTTTTGTTGGGAACATTT---TTGCTCCATTTCTCCCATCAGTCCTAAGGGAACGTATTAGCTCTGTTTATCATGTATTTAGGGAA-GACGGTGAACAACCAATGGACTGTCCATGTCTATAAGTA-TGGCTGCATGTGCTGAGGTTCCAAAGGAAATCAGGCATCTGGCCTGGAACTCATGAGGCAATGTTCCTAATAAAGGCAAGGCAATGGTCCTAATGAAGCTTAGGAAGGGACACTCAGGGAAAGCAGGCAGTAGGCCTAATGAGACAGAGGCAGCCGGCCTAATGGGAAGCAGGCAACAGGCCGAAAG-CGAGTAGC--AGGCTCCGTTCTGCATTCCCCTTCCTCTGAA------CTGTGAACTTTCCAAGTGAACCTACCCAGAATCACA-TTGAGATGCATTTGTCTGACTG----GTGCCGGAAAAAGGAACTGCTGTTAGTCCATAATGAGAGTCCA-TATGCAGCCCATATGCTTTATTTTATTGTGGACTTAGAAGGATTGGGACAACTGGTAAATACAGTGCACACCATCACAAGCAA-----TAGCAACCAAATGCCACAGATCCAATTTGAGATG-ATTCCTGAATTCCTAAGTTTA------------TGGGTTTTCTCCTCATCCATACTCTTTCCCTCTGGGTATTCATCATTATGATAAAA--TATTAAAACTTTCACTAAGCATTTGTGAGGATTTAAATGATAGGCATGGATATTGTCTTTTAATTAAAACAAGAAGAATGCAAGTTACAGTCTTTCTAATATTTGATATTCAAAAGGAAA------CATTTATGTAATTTCCATGGATTTGGGAT---ATAAAATATACAATACATAGCAGAAATATGAGGCTTCT
s HiC_scaffold_1 134764580 2943 + 233722169 TTGACCTTGACTTTGATAGGTGAGTGCTACAAAGAAATTGTGGCCCTGCCATCAGGTGAATATAGCCCTTGACCCATACTTCAAAACAAATgagttaattaaataaaaatgctatcTTCCTAAAGGCACTGAGGATTGATGTTAACAAATGCTTTCCTAGA-AAATTGTATGGTA--AGAggcatttttcttcttaaaatcaaTTTTCATGATCTTTTCCCCACTGAGTTGTCTTGTAGT--AAGGACCAATTTTAGTAAA-AAGTTTTACCTGCTATaatgt---aaaatagaataaataaaacaaattctgatGGAGTCTCAATACGAGAGAGATTTTCTAAAAGCTATTGAAGCTAATTCTACTTGTCTGTTTAgggtaaaaacatttttaaggaatGCAGTTTGGTGGCTTTCAGCTTTCCTTAAATGTGTAGAGGAAAGTAAG----------TATTCTtgactgtctttttaaaatcaacatgACCATAAAGTTTACAATTTGCAGTTCAAAGTCAATGTTAGTAGTCATTGT----------------------TAGCactttttccca---gaagaattttaggaggaATGCTTATTTTTCT--ATAGTGCTTAAATATGACTTAATCCAGAAAAGCCTGTTACTATG------CAAGCTAATGTTTTGACAAGGCAGAAATTGGAGCATGTGGACACTGGTGTTGCATGAATCTACCCAACAAA-CATTTCATCAAAATATGTCTTTCAAACTAATGTGTCTGTTATAATTTCTGGGCCCAGTGTTTAATGAACAGTTCATCTAAACACTACTGTCAGGACAGAA-TGTTATTGGCTGTTGCTTTCCCACATGCAAGTGATTAATAAAGTGACAAATTCAAGACCAAAGCTCTGAAGGTTTAGGACAGATTTAGCAGGGAGTGTCTAAGATATGACTCTTTGAACAGGAATTGGGTTTTCAAATTTGATCTAGTGAATATCCTATCCAACACTCTACAATGCCT---CAGCTGACTTCCTGAAATATTTGACAGTAACAATGGAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAACGGTATCTCAGCATGTTTCCTGgactaaaataaaagacaattcaAGTATGCATTAGCCAACAATTTAAGGATAATT-TTTATCCTCAATCAAATATTGTAGCATTATATTCCTTCTGACTGAGAAATGAAAT----tggtattttcaatttttgtatctaattctttttcataaatgaagaaatgttttgTTATCAGAacatatgaaattaaatgaaagatAGGCTCTCAGAAATTACCAAGGGAGAGTCAATATTCCCTTGATATGAATGAATATT--TGCTAAT-TGTTCAAGTGGACAAATTTCAAGTTTGGAAcatcattatttgattttattaca--gtcaGGGATTTTAAACAATTTGAA----------------TTCAAGAGATTTTTCTAATATTG--------TTTGTGTAAATT-------ATCTTAATGCTCAGAAAGTAATAATATCCATTTACTTATGGGAGGTTTGTATACTAATATGCTAAAATGACTATCAACCTTATTCTGTAATATGTGAAATG-TGTTGCTTATAGGAACAATATAGTgt--tccatgttttaaaaaaagaataggatCTTTTGTGTTTAa--ttgcaaaaatatatttaaaccaaTATAAGAATATACAGAAAGTTGCACTATTTGAAAAAAGAAGCTATTTCACTTCAGGAggctatatatataaataaattatatagagCAATATACAAAAAAACCCAAGTGCTTGCAGGTGTAATACATTATTCTGAAGATATACACTGCATTTTGATCAAAATGGCTTTACTGTACTAATCCAGTTTTCATGTGAATAAATTAAGATCATTAAACTGTATTCTTGCTTGTAATTA----GGAGACATTGGTCACAAAGATCACTGGTTTCTCAatgtctaaaatataaatataatagaaagtaaaata----attaaccTAATAAcatcatttaaattatatttgttctaataaaaatgaattcaaatggct--------tttttatttattcattccgcTGCAAGAA-ATTTCATGTAGTATGTACTGATTTCTTAAAGGCAATAAATGTAACATCAACCTCAAACCAAAGGGAACTAATGGATTATAATGGATGGGTGGTAGTGAGTGAGGCCTAGGATATCAAATTCCTTTTGTTGTGAAAATCTCCCTTTCCTTGTGCTTCTCATCAAGCataagaaaat-tattaattttggcTGTCATGCATTTTGGGAAAGATGGTAAATGGACACTGGACCAGCCATG-CAATAAGCACTAACTCCATACAGCAAGTGTCTAAAAAATATCAGGCATCAAGCCTAATAAGAATCAGGTAATGTACCTAATAAAAGCCAGGCAACAGGCCTAATGAAGTTTAGGCACTGCGACTCATGCAAACCAGGCAGTGGGCCTAATGAGACAGAGGCAAGAGTCCTAATGAAAATCAGGCAACAAGCCGAACGACAAATTCCATAGACTTCATTTTG-GTTCTCTTCCCATGGAAGTCCCTCTTTGGAGT----AAGTAGGCCCACTCAGAATCATACTTGAGACATACTTGTCTAAGTGCAAAGAAGCAGGAAAGGGAAGTGCTATTAGTACCTAACACAAATTCAGTGCAAAATTGATCTTCCTGATTGAGTTGTGTATGTACAATGCATTTGAAAACCATCAAGACCCGCCCACTCCATCACGAGCGAGTTTTTAGTAAAC--ATTTCACAGTTCTCATCTGAATTGTTTTTCTCCATCtctgagtttgtttttgttttgttttgttttatcatgtcTTAGCATCTTTTCAgctctttattcattcatttggaacaatttattaaatcatttaaCAAGCACTTATGAGACTCTACA--------------GTGGCCCTCTAATTAAAA-------ACTGC---TTGTAAGCCCTAT-ATATCTGATTCttataaggaaataaaatcatttatgtaATTTTCATGACTCTTAGGTTGGAAAGAATACACAACATGTAACAGAAATGTTGAGCTTCT

a score=37552
s chr3           148068932 1158 + 160039680 AATTCACAGTCAAGGGAAATATTTT--------ATTATTCTTTCATATTCTCCTGCTTATAATGCAATGTACAATGTGGTGGCCTGTAAGACTAGTACTGAATGAGAACTGACTGACTAAATATACTTTTTGAACATTTTCACTTAACCATAATAATTTCATCATAATTATTACTGTTATTATTTCTTTAGGTAAAAGCAACAAAGGATGGAAGGCTA--CCTTTGTATTCAAACAATAGAAGTGTTGTCTATAGTGTCA----CACTCATAAACATCTCATCATCAAAACAGTGTG-TAGATTAAGCATGGTTCATGAATTTGGGAACTAGGTCTGCAGTGTAACACTATGAAATTTAATCACTTAATTCTAAAATACTCTAGGCCATGTTATTATTCTAGCAACAGCATCAAAGATTGTTGCCATGGGCAAATATGGTACATATCATACAATAATATGTACCATAAATG-----AAATGTAAACATTGTATCTTCAGAAATTATGGTATTTTAATTATGCTAGTCATCTTAAGGTTGCTTTACTTGTTTCTAGAATTATTATCAGAGAAAACCAACCTCAAGTATTCGGGATGTGATTCTTTTTTTATTTCAAATTAAATTAGAAGGGAAAGAACCCACAATAGCAGAGAATAATATGTCTGACATGTGGTTTTCCTTCAGGAGATATTGAGTTTTTAGGTTTTACTAAGTCCCTTGGAAGCTTTAGGGTTCTTACGATGCCTGGAGTCAATTTTGAGCAACTTTCCAATTTACTTTAGGGAATCTTAATTCAAATTCAACAAAACACTGAAAAAAGGAATGCTTTGGGGGCCATCATGCTTCTCCAAGGGCATCAGGAGGAGAGTCCCTGATGAGGAGATGGAAGATGTAAATAACACATCTCTGTAACACTCTGTAATAAGTTTAATGGCAATGATG---TTAGAA--CACTATTG-------TAAAGTGTATCCCTTTAATTGAGAT-GTTAAGACTGGGTCTAACGATCAAACACAAGTAGGAAAGCCTTCATTGGATACGCAACTTTCATTTAGAGTCTCTACTT------TTTTTTCTAATTTTTTTCTTTACTATTTGTTATTAACTTTTCTGACTATGTTGTCATCAGCTACAACCAGAACAAGATATTGTGTTATAGTTCCAACAATGCTTGCTCTCTCCATTCAA
s HiC_scaffold_1 134771283 1141 + 233722169 AAtccaagaacaaagaaaacatatttgTCCACTATTACCTTTACATCTT----TGCATACAATGCAGTGTGCAATGTTATGA---GCCACACTTCTAAGGGATAAGAACTGACTAA---agcatatttttttaattctttgatttaaatacattgacttcttttt--tttttaatttta----------ggacaACAAAATTGAAGGATTGAAAAATATTCTATTGTTCACAAATAATTGAAATAACTTCAATCTTtgcaaatatatgaataaatatatcaTTATAAAAGCAATATGACAGAT--AACATGAATCATGAAAATGGAAACCATGCTTACA---TAGTACTAtggaatttattaatttaattataaaatcattttaactgTATCATTGTTCTAGAAACA--ATCAAAGATGATTGCTATATGGAAAC-TAGAACAAAGTAATAAATAGTATGCAttacaaatacatataaatataaata----------aaatgttatactATTTTAGCTTTgccaataatttaaatttttcgaTCATTATTTC-ACAACAAATATTAGAGGAAAGCATCCTCAACTATTTGGGATATGACTCTTTTTGAATT-CAAATTGAATTAGAA----CAAAACCCACAATAACACAGAATAATATGTCTGACACATGGTTTTCCTTCAGGAGATATTGAGTTTTTAGATTTTATCAAGTCCCTTGGAAGCTTTAGTGTTCTTACGATGCCCAAAGTCAATTTCAAGCAACTTTGCAATTTACGATAGGGAATCTTAATTCAAACTCAACAAAACACTGAAAGAAGGAATGTTTTGGGGGCAATTAGACTTCTCCCAGGATATCAATATGAGATTCCCTGATGGTGAGAATgaagatgtaaataaaatataaccatAATA--CTGCAATATGTTTAATagtaataatgattttaaaaatcataagtgAGAAAAATAAGCTTTATCTATTACATTGAGAGAATTAAGACTAAGTCTAAAGGCAAAATGGAAGTACACAAGAGTTTACCAATAACAAAAACCCTACTAAGTGCTTCTATTTGCACAATTACGTTTAAGATTT--------TGTTTGATATAACATGTACTGATTTGGATTAAATCAAGGACAAACAGTAAATGACTCTGTGTTATAGTTCCAACAAGGCCCTCTACTTACATTCAA

a score=34039
s chr3           148070712 1298 + 160039680 TGGAGTGACTTATGTCTCCAGGCAT-CTGGGTACCCT--GTTAGGGATCTTGTTCAGAGTCTAAACTCCACTTGATGAGTATGTACTTCTTAACGAGTACAACCAGGAGACCTATTATTGTGGCTG-----TTTTCCTAACCAATTAATCATATTGTCATATTA-------TCTTTGATTAGTATTTAAGACTAAAGAGCTTTTCACTGTAAAGCCAGGCTTTCTTCCCGGTTCGT-ATAGTCTTGTAAATGGAGGCACAGATTTGAAAGAAAAGTATTGCATTTTACTTAATGAGTCTTCCTCATATCAGAATTAGAAATAGAATCTAATTATTGAGTCTATGATT-ATCTCCTGATACATACATCATTCTTCTCAATTCTTCTTATACAAAGTACTATTTAAAATATAACACAATTATTCACTCAATATCATGCGACAAAAGCCAGTCAATTAAATTCTGTCTCATCACCTTTAATCTTCTTTGTCCTACATCAATATGTATTTCACTTGGgtgtcattgtcatcttggattcacaatagccaaCTAAGCATCTCATAAGGATGACAACATTTCTTCTAACTTTCTTTGTTTTAAAAGATTTAATGAATAGTCCTAC---AATTTATCTTAAATTAT-TTCTGAATAATCACTACTGTGATTCACAAAGAT---------AAAAGAGAAGACATCTTCTATCTTATTCTCTTG--------TCCTTGGAATATTTAGTCATGatataaattattttaatgtagatatttaatttaatGAAATTTGTAGTGATGACAAATGTGTAAGTTCTCAAGTTCGAGTACTAAAATTCAACACAAAA-CTTTAACAAAGTCTGCAAAAAGCCACTCTGAGTGATAACTCTATAGCAAATTGAAGCAATAGATTAT------GAACTCTCAACCTACATATCATTTATAATTGGATTGTGTCTTATAAAATA------AGATGATATCAACTACT----ATGTTACAGAAAGCC-------TTCCAATAGCATTTTTTCCTTTAAATGTTGAATATAATGTCATATTTTACCTGCCTATAGTAAAAACCATAGGAAAACTAGTTTCAAATATATAATGATGTTATATAAGAAAGGATAGCTCTAAGCAATTTTATT--CATGTACTTGCCaaatatattaaaataataattttatatCTGTCTATTTCTGTTTGTGTCCTGAAAAGGATCCTGTACTTGAAGGAAGCAAATGTGCTCAAAATCTAAAA-GAATTTTTCTAATGAGCATGACGATAGGTGAGCCATTCTCAGCAGCTTGCATATTAGCAAATCACCGAACCATACATGGGAACAAAAGCAGGTTTAGTTG
s HiC_scaffold_1 134773628 1264 + 233722169 TGGAATGACCTCTTTCTCCAGAGATTCCTGGTCCTCTTTGTTGAAATTAATGCTCAGACCCCAAACT---------------------------------AA--AGGAAAACTATTAattttgttggttattttttctaa--aaataactataattttatattgctatttttttttgcttgagatTCAAGATTGaag--ttttaaactttaaaactttgtttATTCCTATAATGGTTATGGTCTCACAAATGGAGATAAAAGCTTCAAACTCAAGCATTATATTTTACTTAATGGTTATTCTGCACATCAACACTAGAAATAGAATTTGTTGAGTGTGATTTTGACTCATATCAGGACACGTG--TTAGTCTTCTCAATTCTCCTTATACAGAGTACTATTTCAGAAATAACAC--TTATTCACTCAACAATTTGTGACAAGATCCAGTCAATTAAACTTGGCTATATCACCTTTAATCTTTTATATCCTACAAAAGTAAGTACTTCATTTGGATGTCATTACCATCATGGTTTCACTATGTCCAAGCAAACCTCTTACAAAGATGACACAGTTTCTGCTAATTATC----ttctaagaaaaataatgaatagtCTTACAATAATttatcttacattttcttctgaataatTACCACCATGTTTCacaaagaggaagaagcaaaaagagaagaCAT-TTCTATCATATTCCATTGTACTTTTCTTCTTGATATATTTAgtcatattataaattattttaatgtgaaaatttaACTTAACAAAA-TTGCACTGATAGCAAATGCAGAAGATTTTAACTGCAAGTAATAACATTAAGCACAAAATTTTTATTAAGGTAGgtaaaaattcattttgtatgATAATGCAATGCAGAATTGaggcattattttattattggaaAAGCTTACTCTATAAACTTCCTATAA-----------CTTGCACAATACTGTTTAGGTGGTACTGCATACTgtacattttacaaaaaaaaaaaaaagttccaaaggca-tttttcctttaaaagctgAATATGTTGCCATAAATTAGCTATCCATTTTCAAAgccat-----aaatattttcaaatctata--------aaacaaaaaa-------tttaatcaaTCATGTTGACACATATTGACTAGCCATATTAAAATCATAGTTTCCCCTACA-----TGCTGTACATGTAGAGATAACTATACCATCCttgatggaaggaa--gcaattacaATTCAAAATGAAACTTCCTTGTTGCCATGACAGTGGAT---------TCAAAAAC-TGCACATTAA-AACTTATGGATGTAAACATAAAAACCCAAAAGGGCTAAAGTG

a score=28397
s chr3           148074990 1261 + 160039680 gtttacacatcagatatgcactctcttcttcattaaaa-aagttgcctgaaaatgtccctggca-ctatattcctaacaccacagaaaatgtgaggtaagctaatatccacctgcattaaaatcaatacatacacagtggcttgtaacggtaatagaatggaacaatgtaTCATCTTGAATG------------TAGAGAACCCTAATAACCAGATTTTGCTCACAAAAGAAGAGACTCTAAATCATATACTTATAATTTTATCTAATATTATCACCATGGAAATTGACATAATCCACATTTATTGACGTGAGAATCATAGTTACACTTTCAAATGTGGTGATGCTTTCTG----GGTCACCATGTTGCTTTAATTCTT-GCTTTGACACTAATTTCTAATATGTATTGAATTCCTACCAGCCCAGTGATCTCTTCACCTAGCCTGCAGAATATGTCAATAAAAAACCTTATCTAAAAGTGAAAATAATAGATAAGTGGTGTGTTGACAACACAGCTCAAGGTTGA-AATAGGCATGTCGGTCTA---AATGTGTGACTATTCTTCCTGCGGATCAGAGAGCTCGCC--TGATGCTTCCCTCCTTGACTGGCTGAAGAAACAG--------------TTGGTTTTAAACATACCCTTGTAGATATATGCAGAACACTCTTGGAAAATGTTTGTTTGTAGAGGTCACATCTTCATTACTTTAGGCCAGAATACATTGCACTTTTGGTATTATTTAATAAGAATATCGCTACTCTGTTA--TAAGGTTTGGGCAATTCTAATTAAATGGAATTAGTCTTGATGTTACCTCTGTCTCCGCTGTCAGAATCTATTCTGTGTCCTGTGAAAAGACTTGTGGAGCAGAAGCTTGCCTCCACTAACTTATTTCATTCAATTAAAATTAAATTGCACAATTG-ACGTTTTTCTTGTCTTTTCTATATAACATTTTAGTTAATTGCTTAATTAAAACTGAAGCCTGACATTTGTTCCTTTCTCTTTAAGGAAAAAAAAGGAAAAGGAGAGAGAGGAGCAAGTTCCTTGCCACTTTCC---------------CAAATGTTGTAGGAATAATTGCCACTACCAGGAAAGAAATGGATTA----GCTGCTTCCCATGAAGGGCTTCTAAACACATACAAGATTGTTGAC-----TCAGAGCCAGATGCCAGTTTCTAAGACGATGTAACCATG-TGCAGCAAAT---GCCTCCAGTTTTCAGTGCACTGAAAGTAAATCAATAATCCAGGCTATCATCTTTCTTTCCCTTAACATCTTTAGTGATTCTTGGTTGCCGTATTG
s HiC_scaffold_1 134780845 1269 + 233722169 GTATATCCAACAGAAA-GCATCAATTTGTTCACAAAAACAATTTGTGGTAGAATGTCCATAGCAGCCTTTTTACTAATAGCTTCCAAAACTAGAAGTAATCAAACATCTATCTGtactgaaatgaataaatttaaggTGCTATAGACATACAAAGGAATATATCAATTCCTCATTTTGAATGCATGCAACAATGTAAAGCAACTTCATAA----ATATGAGGCAAAAATGAGTAGACCACAAGT-----GCTTATGAATCTCTCttgtaaagtttaaaaacaagtaaaaacagTCTGAGGGGCTGGAAGTCACAGGCATGGTTTTGATTCTAAAGAAAGCAGTAATGACTGAGAAGGTCA--ATATTGTTCTAGTTCTTTATCTTGGTTCTCATAACC--TATGTATTAA----CTGGTAATTCAGTGATCTGTACATt----------gatatttcaattaaaaatcaaGCCtaaa--tactgataaaaaatagCTGGTATG-----------ACTCAATGTGACTAATAAttctcttaatctttttaaagtatgtatatt-ttattggAGTTAGAAGGTATCAGCATTGCTGCTGTCACGCCAGAGTGA---AAGCAatgtaattaatttctttttttgttctgaaCACATTCTTCTAGA-ATACAGAATACACTCTTGGGAGAAGTTTATTTGTAGAGGTCACATTTTCATTACTTTGGGCCAAAATCCTTTGCACTTTTGGTATTATTTAATAAGACCATTGCTTTTCTGTGAAGTAAGG-TTGGACACTGCTAATTAGGTAGAATTAGTCTCAGTGTTATCCCTGTCTCTGCTGTCAAAATCCATTCTCTGTCCTATGAAAAGACTTGCAAAAAAGCAGCTCATCTTCACTAACTTACTtcattcaattaaaattaaattacacaATTGAACTTTTTTCTCGTCTCTTCTATATAACGTTCTAGTTAATTGCTTAATTAAAACTGAAGCCTGACATTTGTTTC--Tctctttaggaaaaagaaaaaaaaatggaaaa----agtaagaTACT--CTACAttctaattcatttattcaataaaagtCTCAGAAATTGAT-CTATTACC---AAAGAAAGagtttacacttttttttttcataaaacattttctaaaaggtAATAGAATGTTAACTAAATTCATTGTCAAGTTCTAATTTCTAAGAAG--GCATTGATGATGCTGTGAACATGGATTCCACTTTCTATTCCCATACACATAAAAAAAT-CTCAGAGAAGCCAACTTGGCTTTTCTTACCATCTTTCTCAATTCCCAGTAGCTATGTTG

a score=57005
s chr3           148084422 4184 + 160039680 [encoded data, 4565 characters]
s HiC_scaffold_1 134788749 4200 + 233722169 [encoded data, 4565 characters]

a score=59345
s chr3           148090693 4099 + 160039680 [encoded data, 4377 characters]
s HiC_scaffold_1 134797444 3984 + 233722169 [encoded data, 4377 characters]

a score=25882
s chr3           148098668 995 + 160039680 ATAATTATACCTTATACAAGAAATTAATCAATTTTAGAACATGAATAAACTTGAATTCTTAAAAGC------TAAAATACTAAATGCTAGTATAGCAAATATTATTAATGATAAGTTATGC-------TATGATTTAAAAAAATTATAATCAAAGAAGAAATGCTTAATTTGAGCAAAGACAGCACAGAAATCATCCGTAGAAAATGAAAACCAGCTTTTATTTGACTCTTAATTTTTATGAATTTTGTGTTTTATATTGGGATTTTATCTCCTTCAGGTATATATGGAAACAGATCAT--------ACCTGAATATTGAAAAATACTCTTCAAGATGGCATTTT-ATTTAGGAAATAATTGCTTTAAAAATAGCTTTTGGTGGAAAGGAAGCTTGTAAGAGGCCTAAAAGCCTGGATGATTCCAGGAATACAGCACATTAGGCTGTAGCAAGATCAATATTAGTTGAAATGTAGTTTTAAATCATTTTGATATAACTAATACCTGTGCCTTAAATATTTCATCTGGCAAAATATTCCAATGTTATATCTAAGAACAATAGCGTCAGACTGAAACTCCAGCCTACTTGGCAAAACCTAATTCCCTTATTCTGAAACAAAATGCCTTTCTGATTTCCATTGAAAATTGCTTCTTTACCACCCGACGTCCTCTGGGCTGCCCAGCGACTGTTCTGTTACAGAGCAGAAGCTGCAGCTCTCTGAGGGGAAATAGAATGACTGACTGTAGAAATGAAACGACATGTGCCCAGACAGCCTGCAGTTACAAAGTTCTGTGTGAAGCCACATCTATTCTTAAAACTTTGTAGGGCTATAATATCCAAGTCAAAGCCACAAGGTGATAATCCCCCCCCTCGCTGTTTTGTGACAGTTGTCATCCTCTAAA--------TCTTGGCATGTGATTGGCTTTCAGCCTCAAGAAGTTGGCCCAGAGGAAAC--TACTTCAGTATCTACCTTG-GTCAGCCTAGACATTTGCAAT-----GGGTCTATGTGCATCTGTACACATG
s HiC_scaffold_1 134802805 953 + 233722169 ataattat--tttaaagaaaaatgtaagctaCTTTGTACCA---ACAAATTGGTAA-CTTAAAAGCATTGAACAAATTCCTAGGTATT-------CATACATTACCAAGGTTAACTCATGCCAAAACATAACatctaaaaagat-------aaataataaataat-aatt--agtaATGACAAGTCTCTCATCAAAGGAAAAACCTGAAG--CAGATCT-----------------------ATATTAGGATTTATATTAggctattaaatatttaaaatat-tatttaagcaAGACATGCTGATTaaccaaaatattaaaa-----cctagaggatgatatttttatttagggAGTTTGTACATTGAAATTGGCTTG-GGTGGGATGAAAGTTTGGAACAAAC---------------attccaggaaaacaaaatgttacatTGCAGCAAAATCAATATTAGTTGATatgtacttttaaattatttttatataactaaTACCTGTGTTTTGACTATTTCTTCTGGCAAAATATTACAGTGTCATAGGTAAGAATAATAGCATGA-ACCAGAACTGTAACTTACTTGGTAAAGCCTTATTCTGCTCTCCTGAAATAAAATTCCTTTGTGATTTCCATTGGAAATTGCTTCTTTACCTCCTGATGTTCTCTGGGCTGCCCGGTGGCTGTTACATTACAAACCAGACACAGTGACTATGTGACAGGAAATCATATGACTTAGTACATGAACTCAGGAACAATTGTTCAGAACACCAGTAGTTAC-AAGTTCCACATGGAGGCATATCTATTCTTAACAATTTAT--GTTTGTGATATTTCAGTtctaataacaaagaaataatttcCCTGGGGAC--TTTCGTGACATTTGTTATCTTCCAAATAAATTTGTCTTGGATCATGATTAGTTTTCACACTAAAGAA----TACTGGAGTAAACTGTATTTCTGTATCCATGTTATAGCAGTTTAAACGTGTAAGATTGGCagagtatgtgtgcatgtgtgtgcctg

a score=85039
s chr3           148106668 4594 + 160039680 [encoded data, 4950 characters]
s HiC_scaffold_1 134812667 4538 + 233722169 [encoded data, 4950 characters]

a score=104345
s chr3           148112027 4108 + 160039680 [encoded data, 4293 characters]
s HiC_scaffold_1 134817550 3972 + 233722169 [encoded data, 4293 characters]

a score=42788
s chr3           148128450 1547 + 160039680 TCTCAATTTATGTTGGATACTTAAATTGTATAGTCTTAGTGACCTGTCACATCTGACCACTATTTTTCCTGAGATACACATATTCAGGCAAATACATTATTGTACTTTATGAAAAATAAACAATGGAAACCATTTCTACAACGTTTTTGAAGGAAACACCTTATCACCATGTGCTCTAATTTACTGAATATCTAATGATGTAAGTTGAATTTGGCTCATCA-TACTACTTTTGTATAAAGTTATCAAAATAACAATTGACAAATCCTGGG-GACTTTGCAATACCCGTTTCTACATCAAATACCTTTTCCC-CTATCATCATTTTC-----------------------AAACTGGTAAAGACTTTTCTCTATGGAGAAAAAAAAAAGTGCCAGATTTCATTATTTTGATGTTTCCTTTTTAATTTGCATCCTTAAAGAAGCATTCCTTCATTCCAATTCATGAGTTTACTCGTTTGCATT----------------TAAGTTCATGACAGTACACTTAAACTATTCAGTCACATCTACCTCTTCTGGGAAATTTTGACATCTTTCTCTAAAATGCTTGCACAGTTTT--AGGTTTTCCCTTTTAAATTCAGTAGCAGATCATCAAGCCTTTGAATACGGCATGCCTGGCAGTTGTCAAAGCAGAGAGCCATACATGTTTGCAAACACAACAGATGTTCTTCTAGTTGACGTGAGTGTGGCTGTTTAATGAATGGAGGCTGAATTAATCAAATTATTTTATCTGTATTCCAGAGCAGAAAAGTTACTAAAATTAAATTATTCATGTAGACTAGGATCCAAGAGCAACAGCTATCATACTCTGAAACATATTAGCAAACTATTTAAAGACCTTAAGTCCTAGAAATATATGTAAAAA----CCTCTTCACGGGGGAAAGCTCCGGAACTCTAAATGAGATTCAAGCACTTCTAAGTAATGTTGTTTTCAGATAGTTGTTTCTCCAAACTTAGATTTTTCTAACATGATTCATAAGTCCCTGAAGACTAA--------------------------TATTTTTGTAATTT-----------------------------------------------------------------------------------------------------------CTGATCTTATATGTATA---------------------------------TGTATGTATGTATACC-----------------------------------------TTCTTGCATCAATATTTATTAAGTATACTTATGTACCAACACTAAGTTGGGCTTCTGGTAATCACACATAGAATTCTGGATAC-TGTAAGAGTGCCTGTGAGTTACTTAAGATATCATAGATATGATATGATACCA-CTAAGAATATTATGT--CATTTTAATGACCATGAAATCACCATGGTTTTAGGGTGTTTTGTGTGGAATTTTATTTATCAGTACAAGTA----------GTTTCCTTTTTGATTGAGACACATGAGGAAGCAAGTGGAGTAATAATGCTATACTAAATTCAGGTAAGTGCATAAGGGTGATAACTGATTTAAGCTGCAATTTCCTTATCCTCAGAGAAAGGTCAAAACGTGTTTACCTTTTTTGAGTT---GGGGGGTATAAATCAACAACTACATAAAATTTAAATATAAAGTGCATATGCAGAAACATGCCTTGTATGTTAGTTTTTTG-TTAACAAAGATTATACACAATATCAAGGTCAACCAGAAGAAAATTATT---------CAAATTAGTAAAATAGAAACAG
s HiC_scaffold_1 134838746 1771 + 233722169 ttttaatactttcttGGTATTTAAAATGGATAATCCTCAGCATCTATCATACCTGACGCAAAGGTTCACTGA--CACACATATTCAGACAAAGGAATTATTCCAGCCTGTGGAGA-TAATCAAATGGTGACATTACTGC-----CTATAAATTCATTTTCCTTCTACAATATGTTCtgatttaatgaatatttaagtATGTGTAACAAATACAACTAATTACTGTGGTTTTTCTATCGGGTTATTAAAATACTAACTAGGGTGTCTTGGGAGAGTTCGCAATACCCATTTCTacttcaaatactttttttttctatcattgtTTTCCGGAGAGCCTGGCCTGTTTTTGAGAACTGGTGAAGAATTTTCtcagtggagaaaaaaaaa--tggcacatttcattattttgatgtttcctttttaatttgcatccttAAAGAAGTGTTACTTCATTCCAATTCATGAGTTTACTCCTTTGCATTAAGTTCGATGTGTCTAGAATTTCATGACAGTGCATTTAAACTATTCAGTCACATCTACCTCTTCTGGGAAATTCTGACATCTTTCTGTAGTATGCTTGTAAATTTCTTGTGgttttccctttcaaattcagTAGTAGATCATCAAGCCTTTGAATATGGTAGCTCTGGCAGTTGTCAAAGCAAAAAGCcatatatttttccaaatataatcAATGTTCTTCTAG-TGAAATGTAGGTTTCCATT---TTAATGAAGATTAAATTAATcagattatttt-tctgtattccagTAGAGTAAA-TTACTATAATTAAATTATTCATGTAGCTTAGGTTTAAGCAGCAACAGCTATCATATTCAAAAATACATTGGAAAACTATTTGAAAATCTTACaacctaaaaatataaatgagaaacATCTTCTTCTCAGTAGAAAATATgtgaacattaaagaa-----aaatatttctaaataatg-tgTTTCCTGATTATTATTCCTC--AACCTGAGTATTTCTGTCAT-----ACAATGCACTGAAAATTAAGGGatcttttgagttttttgtttgtttattttactggttttgtggggtttttttgttttgttttgttttgttttgttgttttttttttttgagacaggacatTGATACATAGTCCAGCTTGGATTCCAATTCACAACACAAtctaggctgaccttaaacttacagaagtcctcctgtctcagcctcttgattaATAGTTCACAGACACGTACCAACATGACTGGTTagagatattatttttatagtttccaaTATTCctccattaatatttattaagtat--------------acTAGGCTAGGCTTTTGTTAATCATATTCACAATGTTGAATGCTTGTTGGAGTTCTTGAGAATTAGTTTTTAACTCAGATACATAAAA--ATACCAGCTGGTAATGTTATATGGTATTCTAGTAGCCATCTCATCTTTATCTTCttcctctgtttct------gttttgttttccaataaTAAGACAGAAGACAGCTTTTCTTTTGGATCAATATAGACTTGGGGCTATCTacagtatttcttttctattaaa------tAGATGTTAAGGAAAAGTTGCTCAATTGTGTCTCAGATACCTTATGTACAATGGAAgataaaaattcatacata-tttatgagtTATCAGAAGGTGTAAATAAAAAGTTACTTGAAATACTCATGCAAACTGCATATACAGATGAATGTTTAGTGTGTCAATTTTTGGCCTAATAAAGGTTATACACAACGCAAATGTCCATCAgtaagaaatcaatgcaatatcacgaagccataaaaaagaaaaag

a score=39029
s chr3           148131648 1332 + 160039680 TATATATCCTGAAATGTGTAATCCAAAGAGAAACTCTAAGGAGATTCCACTTTTAAATGCATAT---TGTATTTGGAAATAATACTAAGTTGATGATATGGAGAATATATAAGGGCAGAGATTGGATGTTTAATATAAATACTTTAGTTAAAATAATGCTTTGTATGCTAGATATTTAGTAAGAAAATAATCCATTTTAATTTCTTTTATCTCAGAAACAAGGCCCATATTTTAG--------ATGATAACTATATTAATTTACTTGAC----TATGGCAAAA--TACG-ATTACATATAAATTA----TTCTCAAAACCTCAAATATATACAAA-ATATCCATTTTTAGTTTGGATTATTTCCTATTTTGACAAATAAAA-TAACTTCATTGAAGGTTTTCTGTAGAACTCTTAGCTATTT-----GTTTGTTAGTTAATGAGTTTTGGGGAGAAACTCATGCTT---TGGGGAATCTAATCACATAGAATGTCCAAATATATCAACTAAACTTACAAGTAAAGCTAGGGAGAAAAATTGTTAGA-TATTTGCGAA-TTATTATTGACAACTGAGGCGTAAATTCTGCAAAACTTTGGAGGATAAGAGCAAATTTTGGAGTCCCCAGTGACTTATGAGAGACTCCTTGAAAACACTAGTA------TTTTCACCAATTTTAGA-ATTTAATTTATGTGGAAATGCATACTTAACACAGTACGATCATCTCTTTTTAAGCAGTGGAACGTTTTATTGCCAATGTAAGGTCAGTTGCCAATGTAAGGTCAGTTGTATGAGCAAACGAAACTGAAAG-------TGGGTGC--AGTCAACAACAATGGCATCTTAG----------------------------------------TAATTGT-----GGTTGCATGGC-ATCACCAGCTCTCTTAATTGAG-TAACCAGGTGATTCTCAGGAGGAACTGTTAATTGTGGAGGATCCACAGACAGAAGGGTGTATTTCACAAACTCATCCTCAGAGACCAGCTGTGGTGTC-----------TTGATTGTAATAAACTATATTTTAAACACGCTGCAAAGACCAAGGGAGCAATTTAGTCGTCGTAAGAGCAGCGTGCCTCCAAG-AAGACAAACCCTCAAACCCATTCCGCATGATGGCTCTGCAAAATACATCCTTCTCATTTCTCGAATCTCTAGAAATAC-AAATCCCATCAGATTTCTTGGAGTTGCAAAGAAAAGTGATTAACTTTCACTTCTTTGCAAGACTGGATATTTGCATAGGTCACTTTTTAATTT-AAACTGCTTACCTAACCTATAAAGCGCAGTTAAACCGGGTGCTTGTTATCAATCACGACTCCAGAAATGTAACCTTTAATTTATTTTTATTACTTTTTCAAAATGTAAAACTTTATTCAAATGTCACAGCTTCTCT
s HiC_scaffold_1 134842134 1360 + 233722169 TACTTATCTTGAAATATATAATTGAAGGCAAAAATCTAAGGagatttcattttcatatatatatatatataaatcaaaagagataTAAATGGTAAATATGCCGAATGAATA-GAACAAAGATTTAATGCACAATATTAGGACTATCGTCCAAATAATATATTACAAACTGGAAGTTT--TCTGGAAGTAG---ATTTTGGATGCTC--ATCACAAAATCA-GGCAACTACAGTAACACTAATTATAGTAACCATCTCACTATGTATGTCAATATGTGGTAAAAAGTACATACTATATGTAAAATAAACATGCTTGATAA---AAATgcattcaaagatttcaaggttTGGT--GGAATATTTCct----ttacaaacaaaaataatttcgtTGGAATATCTCCATAGAATTCTAAGTTGTTTTACTCATTTTGTAGTGAATGAGCTTTGAAAAGACATGCTCCCTTCAATGGGGA------TCATTTGTAATT--------------------------GCGAAgctaagaggaaaattttttaaaatatttgagaaatcaGTATTGGTA-TTAAGGAGCAAATTCTGTGCACTTATTGAGGAAATAGCAAAAATTTGGAGGTCAAAATATATTGTAGAAA--TTGTTGAAAACACTGATAATACTTCtttcatatactttaaatatataatttacttaGAGATATGAATTTGGC---------TTACCACctctaaaattatg-----ttttattagtaATGAGAAATAAGTT-------TAATACTAGTC---TAagcaaaacataatgaaaaagcACTATGGATTTTTGATCATCTATAATGTCACTACAGACAAGTAATAACTTCTGctacaaaatataaatgttgcCTTTAGTTGTCTTATAACTGCACAGCCATCGCTGGCTCTCTTAATTGAGGTAACCAGGTGATTCTCTGGAGGAACTTTTAATTGTGGACGATCTATAGACAGAAGGGTGTATTTTATAAACTCATCCTTGGAGACTACCTATGGTGCCTTGCAATATAATTGATTGTAATAAACTATATTTCAAACACGGTGCAAAATCCAAGGGAATGCTTTAGTAGTCATAACTGAAACATTACTCCAAGAAAAACGAATCTTCAAATATGTTTCATATGAAGTCACTACAAAATATATTCTTGTAATTTCTCAAATCTCTGGAAATTCAAAATCCCACCAGGTTTCTTAGAGTTGTGAAGAGAAGCTATTAATTTCCACTTCTTTTCAAGATTGCATATTTGTGTAggtcactttttaatttaaaactgcTTACCTAACCTATAAAATGCAGTTAAACTGAGCAATTGTTATCAATCATGACTCTAGAAATGtaacc-----tttatttttattgcatgttCAGAATATGAAACTTTATTCAAATGTCACA-TTTCTCT

a score=66722
s chr3           148135738 1929 + 160039680 TGTTTCTGCTTTCAGTAACTGGATAAGCAACGTTCTCTTTACAAATGGACATGTAAATTGTTT----------AACCTCTTGCACTGCAGTATTTTCATATGACTCCTAAAATTGTCTTCTCCTTTTCATACTACCAAATGATTTTCATTATACAGAGACAATTATCAAAGTTCTGCCCCTTCTTAATTACTTTTTCTTTT---ATTCTAAATGAAGCAAAGATTTCACAGATGTCAATCAAATACCTATCACACATGAAAATATTGATACAG--GATTTTACAGTATAAGGGTATGGGACTGGCTCCTGTGAACTCTCCTTCACCCAA-CACATCCACTTAATGGGCAATCTGAAGTACCATCAACCATGCCCTAGGTTGTTCTTTCAGTTATAGGGAATGTGTGACCACCTAGAAGAGAACCATATACAAGCTAAAAAGACATCCTATATTTTCGCAACATAACATTTTTTTAAGCAAATGCAATAAAGAAACTAGGCCACATATAGCTtatatatatatgtatgtgtatatatatatatatatatatatatatatatatacatatatatGAATCAAATAAAATAAATAGCCGCCTATTTCCAAGTCAAATCAATCCTAAGCAATTTAACTTTGGACTTTG-AGTATTTCATAGATAATCTCTGATGACCAATGATTCATGGAATATAAATGACTGACTTCAGACCTCCCTGGTCCCGGTGCACTCCCTTTCTGCAATTAGGTTTGGCTATTCAAGGCAATTCCCTGTGACAATTTTATTTGAAAGCTTAGACTGACAGAATACCTCATCTCAGCTCCCACATTTACTTTGGGGTTTAGGATGCAGTGATTCCATTCACACTAAATATTCAGACCTGTCACTGTAAAATATACCCAGGATGGCTCTGCCTCTCTTTTGCTGTGGTTCGGAAGCCTTTCAGAGGCCCGTCCGAGTGGAAGCACTCAAGCGAGTAAGTTTTAAAGTGACAGTTCTATATCTAAACTCTATGGTCTTAATGAAATCTTTATTTTAAGAAGTGAACTT-TTAACTCAGCAAGAGGCACTGTAGTCTCCTGCCTCTCTCTGATTAATTATTTCCAAATCAAGTTCACGGGCACAGAGAACATTTTCAGGGTACTCGGGAGACCTGACTGAACTCTGTAGTCCGTGGAATCAGGCACCTCTGAGAACATAGAAGGACTTTCTCAAGTACCTTAGGTTTGCAGTTTTGAAGTGCTTCTTGGGGCTTTATTTATTATGGGGAAG-GAGAGTG-GCTTTAGCTTGCCAGTAGAAGTTTTCAAAGGTCCTTGACATTACTAGACCACAAACAAAGTTCAATGTGGAACCTGGTGGATATTTGTACAGTTCTTAGATTTGGGCATGCTGTAATTAACTTGGCAGACTCTGATGGCTAAGCACCATGGCCACTGGCAGCAGAAGGATGGCAGGTCAGCATCCTGATTCACTGCCAGACTCTCCTGGGGAATGCTT-CATGATGCTTGGAGCAGGTCCAGATAGCTAGTCCCTGAAGAAGTTTCCATGAATGATGCTTACTCTCAAATTAACCTCAGCAATTTAAAGCCgtagccgtggaaatagttaatcccagag---actcatgctatatcacctgacgttctgccagtttctaactgcaat---gtttttgctcttcgcataaaagtgatcacacttgtgagctttaacaacgtgcaaatatccaggtacccttctgagaggaaacccaatgtgtttgttgaagccataaagctaactccactatggaaactgtttgagtcagtatagtcagaggctgtgtgaaacagacaagtcacgttcacagctcaggcttctggattcactgtctaaggctcagtagtagatgagtggtaggttgctt-tggatgttcggtagttgacagaaagaaagaggcaagctaaatccctgacCC
s HiC_scaffold_1 134847156 1775 + 233722169 tgtttctgttttcagtgACTGAAGTTGTAGCCAACCTCTCACAGATGAACAAGAAAGCTGTTTGTATTTATAGATTCTCCTGCCCTCTAGTATTTTCAAGTATTTCTAAAAATGCTCATTTCCTCTTTGAAAATCCAAATAACATTTATCATACAGTGACAATTTCCAAAGTTTTGCTATTCcacacttcttttttccttttctactatAGGTATGTTAAAGG---CACAGATGGCAATCAAATAcacaatattaatagaaatatgaATTAAGCCTAGCTTGGAGTCTGAGT-TGCAGGACAGGTTCCGTTGACGTCTCCTCCACCCAGTCACACACACT------GGAAACTGAAATAATATGCGTCA------GTGTTAGTCATTTGGTTATAGGAAATTAGTGACCACCTTAGTGAAAC---TGTATAACCTatagaaaaattttacattttttctatttttcaactCTTGCA--AAACTCAGTAAAGCAACTG------------------TCTGTCTGtcggtgtctctctctct------------------------------------caaacaaaacaaatacac---taTTTCCATGCTAAATCAATCACAGGTAATTTAACTGTGGTCTTTTCAGTGTTTCATAAAAAACCTCTGAAGGCCAATGACTCACAGAATGTAAAGGGCTTACTTCA-ACTTCTTTAGTCCTGCTGCAGTCCTTGTCTGTAATTACGTTTGGCTTTTAGGGACGATGCCCTGTGacaattttatttgaaagcttAGACTGGCAGAATACCTCGTCTCTGCTTTTACGTTTACTTTGGGGTTTAGGACATAGCCATTCCATCC-CACTAGATATTCAGACCTGTCACTTTAAAATACG-------TGGCTCTGCTCCTCTCCTGCTCTGGAACAGAAGTCTTTCAAGGGGCCATCAGAGTGGAAGCAGTCAAGCGACCGCGTTTTAAACTGACAAGTCCGTATCCAAATTCTGTGGTCTTAATGAAATCTTTATTGTAACAACTGAACTTCTTAACACCACAAGAGCCATTCT-GTCTCCAGCCTCTCTCAG-TTAATCATTTCCAAATCGAGTTCACGGGCAC-------------------CTC-TGAGATGTGGCTGAACTCAGCCGTCAGTGGAAGCAAGCACCTCTGAGCACACAAAAGAACTTTTTCAAATGTCTTAGGTTTGCAGTTTCGAAGAGCTTCTTGGTG--TCAGTTATtatgaggaagagagagagagttttggCTTGGAAGCAGGAGTTTACAAAGGCTCATGACCTTATTAAATT----ACCATGCTGAATATGGAACCCGGTGGATGCTCATGCAGTTCGTACATTTTGGCATGGTGTAATTAACTTGGCAACCTCTGATGGTGGAACGCCGTGGTCACTAACAGCAGGAGGAT-TCCGGTCAGTGTCGTGATTCACTGCCAGAATTGCCTGGGCACTGCTTGCATGATGCTTGGAGTTAGTCCAGGTGGTCAGTCCCTGAGGAAGTGTACATGAGTGGCACTCATTC-CGAATTAACCTCAGCAGTTTAAAGCTGTGGCAGTGGAAATGGTCAATCCCAGAGGTTACCCCTCTTGTA-----TGAATTTTGACCAGTTGTTCACTGCCCTGCAGTGTTTTCTCTTGGCTTAAAACTGATCACA-------------------TGCAA--GGCCAGGTACAATTGTGAAAGGCAACCTAACATTTTTGTGCCAGCTAGAAAACTAACTCATAGGCATGAGCAGTTGGACTTACCAGAGTCAAGTGC--TTAGAAACAGACAATTC----------CTCA---------------TCTCTAACACGGAGGA-------AGGGCCGGACTGCTTGCTGATGCTCAATGGTTGGCAG-----GAGAGGTCAGCTGAATGACTGACTC

a score=25266
s chr3           148157441 1216 + 160039680 CTAGAAAATACTTGAATTTGAAAGTACAACTAAATGAGGAATTTTTTTCTA-GTTGAGACTGTCATTGATGGGCTT------------------------------------------------------------CAAAAT-----------------GAGACATGATAGTGATAGGTGGGGTTTTTTTTTGGGGGGGGCCTGAACATCCAACTAAATAATGCCTAGAAGACGTGTAAGAAATAGACCTTGTTAGCTTACCTCACTGTGA-AGATTCCTTCGG--TGTATCACCAAAGGACCATCCCTGGAATTCTTCATTGGTGCATTTAACCTGCTAAACTCACAATGGTAGAATAATATTAAAGGCAAAA-TACTACCATGTATAACCTTTCAAATTGTAAGCTGATATAACTTAAATTCCAACCTGAAAATATTAGTCCACAGAGAATTATCTTTCTATTTGTTATCTTTTGATGTATTGTTACAATAACAAGACATGGTGTTATTTCAGTT-AGAAAACCTCTGGATAAAGTGAATATAGGCAATTAGTTCAACTTTCAAGGGGATACAACCACAGAGCAGACATAAGATTTCTTCATGGT-ATTGTAGAACAG-GTTATAGCTTCGAGTGCT---AAGAGCTTTCTAATAAGTCATCTGATTTTATTTACACA-----TAAATA-TTTCTTGCTTGTTTTGAAGTAAAATCTCACTCCATG--AAAGGTCAATTCACAGTG--TCTTCTCAGTTTTATTCAAAATGATGAGCATTTGTTCAAAGACTACAATTTCAGTAGATGA------TATTTGAATGTCTATGTTCCAAAGAATATCAAACAGAAGTGACCTGTTCAGTGTAAGGAAATATTAGAGTTACCTGACTGAGT-----TATAATATAGTAACTTGGCTCACACAATCATCTAAGTTTCTTGTTTTTTCTTAGAGAAGTCACGAGGCATTCAAACATTAGGTTCCTGAGATGTTTAGACAGAAAATATAAACATTTCCAGTTCATCCAACATTGTCATTAAATGATGTACCAAAGGCTCAACATCAACAATATTGAGCAGCTGAAATCAGAG---AATAATTATAA-CAAAATTTCTTACCTTCCTGAGGAATGG-AAATAAATTACATTATCCAGCTCATGCTAATGATT--TATTAGTAATCATATTTCAAAACCATT---TTTC-----AGAAGCATTCATTTTGAACACTAAAATTTCTGTCTGtgtaagtagaatcagttgtgcaatgtg-----------------tggaaacatcacctgtcaataatttgctcttggtctaccagcttgggcagaaaagagta
s HiC_scaffold_1 134854977 1291 + 233722169 CTGAAAAATTCTTGATTTTGAATTTGCCACAGAGTGAGGAATTTCTTTATCTGGTGAGGCTTCCTTTAGTGGGCTTAGGAAGGACATAAATTCTGAGGAAAAAACATACCTGACCTTCTCTTTCTGAAGAGTGGGCCAAAATCTCCAGCCTTGGGTTTAGAGACTTGTTATTGATAG-------TTTTATTTGG------CCTAAA-ATCTAATTGGAAAACTTCCTAGAGTCTTGGAAAAAATTAGACTTTTTAGTGTATCTCACTGAGAGAAAAGCCTTTAAATTATGTAACAAAAAGAATATTCCAGAATTTTTTTGTTGGCATAGTTAGCTTCATAAATACACTCTAGTCAAATAAAATTATAGACAAAAATACTGTCATGTTTAACCTCTCAA----TAGGTTAATGCAACATAAATTCCAACTTGAAAGTGTTATTCCACAGAGAATTAGCTTTGTA-TTGTTGCTCTTTGATATATTGTTCCAATAACAAAATAAGATGTTATTTCAGTTCCAAAAACCTCTGGAGAAAGCATGTATAGATAATTATTTCTACTTTCAGAGGGG-GTAAACACAGCACA---ATATGTTTTTTTACTAGTAATGGTAAAGTAATATAATGacttcaacttttaaaaagacttttctaatagagtatttattattttctatacaGAGTCTAAGTGCTTTCTcgtttcattt---ctaaaatttaaggtCTTAGCAATGGTTCATTCATTGTGTATCATTTgagtttaattaaaaataaataacatttgttAAGAAAATGCATTCTTACTACCTAACATTAGTATTTGGATGGGTGTGTT--AAAAAATAGGATCCAGA-------TCTTCAATGTAAGGAAATGTGTAAGTTTTTCAGTTTAGTAAAAGCAAAATATCTTAACTTAGTTGACACCAAGAAGTAAGTACAATTTTT-------GCGAAATCaccaaatgtttaattttttcattat--agGTATGTGGGCTGACAacctaaacttttaaaattcatctaaCATTGTAATCA--------ACCATATGTTCAATATTAAC-ATACAGAATAGTTGAAATCAGAGCAAAACATTTATAGTTACAATTTCCCACTTTTCTGAAGAATAGCAAATAAAT---------CAGCCCATACTCACAATTACTGTTccgaat-atttttcaaaaatactcaCTTTCAAAATAGAAGTGTACcacttaaatact--atttttttttcattttcatggaaaaaatTTTGCATCGTGCATCTGTTGAATTGATATGGAAAATATACTTGT-AATATATAGGTATATTTAAACCAATTTGAATGCAAAAGAGTA

a score=44375
s chr3           148166152 1384 + 160039680 ATACTTATAGAAACTTAGTCATGCTCAAAGCAAATTAAACGGGAAAGGAGATTATGAGTTTATTCCATAGTATACTACTTAAAACTGAAATGAGAG-TGAAT--CTGTCTCTGGAAAAGTGCCCCCCATTGCAATATACCCTAGGAACTGCAAGGGAGAAATGAACAGCTTGATATAAATAATTCTCAAAAGTCACTTTGTTGATAAAAGAAACCTTTGTTTTATGGAAATGAATGATTGTATTGCTACATACTCCAAAGTAGTTAAGAGAATGGTCAGCAGAAACTTTTATGAGTCTGTAATTAAATTTATCCAGATAATAATACTTCTCTGGATG---CTTAAAGGTAAAAACTTAGAGAAGCCATGCACCTGGGCATCTGATTGACATCATCTTTTTTTAATCTAATAATGCCAATTGAGTTCCTCTGAGAAGTTCATAATAGCCTTTATTTACATTTAATTAGTACCTCTCTGAATTAATTCCTCATTTTATAAACCTAATGCAACCTTAATACTAGAAGATGTGAATCGAATATGATAACAACGTGTACCTGGTTGTTTTAATTAATCTGTCTAAACTGAACATGCCACTTCAAATTCATAAAGCTCAAGC-CCATGCTACCCTTAGACTTATCGTCATGTTAATTGGCTGCTGTGCTAGAAGATGGCTTCTATATTA-TCTCACTCTGTGGCA--------GATTCCAGTAG-------AGATTGGTAAGAGCAAATATATAAATTTTGATTCAGATATT-----AGGCTAGTAGGAAATAAATAAGTACTAAAAGTGATTAATAATAAATGAGAGAAAACACAAACAACATAAATATATTTTCACATTTTT-AGAATTATCTGCAATGAACACAGATAAC--TTATTAA---TGAGAC--AACTATAAATCATATACATGATATATTTGT-----TA-ATATATTTAGATATAAAAATAAGCCATCATTGTATATTCTCAGCTCTATTACAAAGTACAAATTTGTGCCTTAGAAATCCAAGGAAAACTC-TCATCATATCAATGTTTTGACTGTATTATAC-TGACCTCAACATTCATGAAGATGAGTGAGAACCAAGTAAGGAAATTGTGAGACTACACTGATCTCAATGGTGTGGTCTCT-----------ACAAAGAACAATAGGTATGTTGGGTATTAGAATGAATAA--------ATGAGTCTCCCATTTGGGAAGATAGTGGGAAATCTCAAGTATAGAGTAGTTATAACATTCCAAA--TACATGTCTCCTTTACA---TTTTTTTTTAATTTACCTGCTTGAATCGGGATTGGATCCAAGACCATTTGTTTAAAGTCAGAGTCCAAGATCAGC--ATCTGTTCTCAGTAATTAAATAAGTGATTGCTCATTGTATCAGAGCTATACACCACTAAATTTTTATTGTGA--ACCGGCCATACT
s HiC_scaffold_1 134856218 1394 + 233722169 ATACTTGTA-ATATATAGGTATATTTAAACCAATTTGAATGCAAAAG---AGTAAGATCATATTTCATAATGTACATTTGGAAACTGTGACACATGCTCCATTACTTCCACTGGAAAAGACCCACACCTGAAGTTATAGTTCAGGAATATTCTGGGTGAAATGAACAGTTTGACATGAATGACAGTCTAATGTCattttgttgctgaaacaaacCTTTATTTTGAGGGAATAAATAGTTATATTGCAAAGTATCTCACATTATTCAAGAA---------CAAACCTCTTTAGAAATATGTAATTAAATTTATCTAGCcaataatgtttttttaaaaaaatcctaaagcTGAAAATTAAGAGAAGCCATGCACCTGGACATCTGATTGACAccacttttatttaatataataatacCAATTGAGTTCCATTAAGAAGTTCATAATGGcctttatttacatttaattagCACCTCTCTGGATTGATTCCCCATTTTATAAACCCAATACAACCTTAATACTGAAAGATGTGAATCAAGTATGATAACA---TGTACCTGGCTGCTTTAATTAATCTGTCTAAACTGAACATGCCACTTCAAATTCATAAAGATCAAGCTTTGTGCTACCCTTAGACTTATCATCATGTTAATTGGCTGCTGTGTCAGGAGATGATCTTCATATTACTCTGTGTCTATGGCAAGAAGTGCAATTTAGTTAGTTTGTTATGAGTGTGAAGAATAAATACATAACCCTGGTTTCAGATATTTGTCCAtgctagagagaaataaaaaaataataagattgGTT--TGGTAACTGAT-GAAAGTAcagatgataaaaatatttttctgcatttttaagaattttctatGATACACATGAATAACTTTTGTTAAAAGTGACACTTATCCAtaatttatgtgtgtgttttgcttgtgtgagtacatacatatacatacctAAATATACCACATAAGTATATTTTAAAC-----CACAGAGTTTAAATCTATGTCTGAAAGTCACAGGAATAATTCATCATTATATT----TTGTGGTTACATTTTACTTGATTTACACTTCTGTGAA----AGTGATAAGC----------------AGGCTAtactaaattaaataatatgaacTTTAAGTGGCTTGGATAACGGGCAAAATGAATGATGCATACACATGTGAAAAAAATATCTTATGATTTTTCCATCTGGGAAAATAGCTGGAGACCTCAAATACAGAG-----ATAGTTTGCCAAAATGGCATTAGTCTTTAATAAAGATGTTTCTCCATTTAACTGTTCTCATT-GGATTGGATTCAAGGCAATACATAC-ATGTCCAATTCTAAGATCAGTGAGTTTCACCTAGTTGGACAAGTAAGTGATAACAAGTTACATCAGAGGCACATTCCACTA-------ATTGTGATTATCAGTcatatt

a score=23893
s chr3           148180973 1849 + 160039680 ATTTATTTGTTGTTATTGTTTGTTATTATCTACTTTTACTTTGTTTTTGTTTT-TAATTTGGCAATTACCTGTTTCCTCATCCTCTTCCTTTCACTGAACCTGA----ACTGTTTTTAGTTTTTCAAATTAAACAGTTACTGGCTTTT---TAAAATT----AAATGTGTTTCCATCTGT---TAT----CTGTATCTTTAGGCATTCATTTATTTC------CTCACATGATAtggcctgtttttttcttatatttcttttaacacaaagtatttccctgagtgtcttacaatctcttttcaactactggtaatttat----aagtctgttgattaatatcaaatat-----ttttaaagttccagtttctgatgtctctaatttttccttatgtaaa--------tagtacttat-----gttatttcaatagtttaaattt---------cttaatgcagacaattctacacaatactccatttatgcctagaatgagcctgtgtcatactgttacagaatggtgtattatggagacaaatattatagtttgcaggtttatacttctatttaaatcttctatacattgtttaactggtgcctgcttcttctctaccttatgggaagttgtatagtgaagtcttcagccattatgtctcaatc--------atctgtctctttct----------ttacttc----------------------------------------------------tttcaCCTCTCACTG-----TACATC---------------------------------------------------------------------------------------ACTTAAGCCCCTGTCTAG-------------------------------TGAAGTCTGTTTCTACTACAGCTTGCAGAT-ACAGCACTGTCCTTCAGCTGTATCCACCTTGAGGCT-CCCTTAACATTGAAATCAT----GGAACT----GATGACATCTAAGTTCTTTCAGTCTCAGGAAT-----CTTATTTTCA-----------TGTAAATTTCTGGATGCCATTTCCATACtggtatcacatccaaatattgccatgcactacatgctag--ctgatgg-ctctccttcacaatgatggcttgaagcataaa----ttgtcccacattttcatcaaaGAGAGGTT---TTCTACT-------TGGTTTGAAAAGC---TTTTTTATGCCTATTT-----TTAAG-------CTATTTTAATACAGT------CTTCTTATCACACCCTTAAGTTCCTTGTACCCCTCAGTCTGCTGCAAAGAACAATGAACCTATTGGAAGgctccatatgt-tttctatgtctaccctaactcagacttctaccatactcagaagaagaagacaaaagttgtgtcatgg------tactgcagaatttttccattcttgccaaaatttcatacattttacttagataaatatttattcatttgcttaacacaatttccTG-------------------TTGTTAATTTCTATGTGTCATAGTTAGTTT---CTGGGAAGACTTTTGCTTACCTCT----GTCACTATTCTGGACAGAGAATAGTGCTTTCTCCTGCCTGGGATGTTTTTAATTAGTTCCCTCTTGTGGCTTGACTCATCTGGAGCACTTGCATGGAAATGGATCTTTATAGTATAATTTTGT-CTCAACAAACATTTTCTGGCCACATCAAGTGGCAGGTTTGTTCCAGTCAGCATCTCCATGACCTCAGCCCCCAAGAACCCCTGGAGCTGTGAATTCAGATGAGGGTGGACCTTGGGCATCTGCTTATTCAGGTCTTTG--GCAGATGGCTCTCACTTTATGTTCTGATTTGTA-TTTGTGGGAGGAGTAAGGGAAAGAATAACATGTTATTGACGATTTGTTTTGGTTTACAATACAAACAGAGTGGAACGAATTTTGGTGAAGGCCTGGGAAGGCCTCAGAAATCACCTGTTATTTATCAGTCTCCTGAATCAATACAACAGCTCCTATTAATGTCTTTTATGCCCATATAATGTGTAACGAGATGATACTGAGTGCTTTCTATGCCGGCCAATCATTTCTGTTTCTTTAGGTAAATTTCCATTTTTATTGCATCTTTTGTGTTTTTAT
s HiC_scaffold_1 134860984 2081 + 233722169 atttttattctattgttttttgtgtgtatttcttttctttatgtcaCTAATTCATAATTTGATCATtatcagttcttttattttattcatttt--tgagtttattaatacttctttcagtttcttaaattaGG-AGGTATTGGCTTTTacttgagatttttaaaagataaagccATTTGTAGCTATAAAATTGTATTGTTA-----TCACTGGTTCTGTGCATCTCATATGACATGGCATGCTGCTCCTTTTATTGTCGTTTATTACAAACTATTTTCCGATGCCACTTTTAATATCTTGCCTGTCA--GATAAGTTATCAAAAAGTGTGTTT-TAAATTCCACATATGTGAATTTTCaagtttctaattttctttacttttactcTCTCTTGGGCAAAGACACATTTAGTATAAATTCAGTGCTTTTCCATTTAGTGAAGCTTGTTTCGTGGCTTAAT--AGACAATTCTAAAAGCTGTTCCATGGATGTTTACAACAAAG-TATATTCCAGTGTCACTGACAGGAGTGGTCTAGAGATGGA---------------GGGCATGATTCTGTTCAAGTCTTCCATCTTTTGTA-ATCTTTTGCTTACTTGTGCAATCTTTTATTGCATGTGGGACAGTGAAGGCTGCAAGTTTTGTATTTGAATTGAGAACATATCTGTCTTTAACTATGTCAGGTATTGCTTCATATACATTATAGCTTTGTCCATTGAAGAAGAGTAGGTGATTATAACCAGCTTCTCAATCCTCAATGACACTTACATGTGCTTGGTTCCTGATATGAGCCTCATACAATTTCAATTTGTGGCAAAAAGAAGACCAACTGGTTGTgtagggaagagagaaaaggggagtTAACTCCCACTCTAGGTAACTGATTCCCATGGGAAAAAACCAAAattgaaatctatttcttctgcacAATGTTTCTCATAATACTGTTCCTCA-CAAGGTTCCTCTTGAGCATGTATTTCACATTTATTCCCTCCTGGGAGCCCAGAGATGAC------------TGATTTTCTGGAATTCTGACTGACTTTCCCTGACATTACTTGTCAGTTGATGATTGATGTCTGTCTATTGATATCACACCCAGATTTTAGTTATCACCGCTTGCTAAAACaattggtcttttctttttaacaatgtgatgaaacataaaatttttgttCAAA--TCTGGTCAAAATAATGTGCAGTTCCATTACAAGTGTAGTTTTGGAGGCAAGCCTTTGGGGTTTATTTAACACTGGAGGAGGGTTCTACTTAGCTAAAGTTTACATCTTTTGATAGTATTTGTAGGTTCAGATTTCTGTTCATGTGGCTTCACACAG------ACTCCCTAAAATGTTCTGTGTTCATGGCTGCTCTTGCCCTGGGTAAGACTTCAGACCTTCAATGAAGATGATGACTAA-------TCATGGCTAAAATGCCACAGATTCTTCCTGTTTTCACCAAAATTCCG-ACAGtattcttaagtaaatatttgttcatttacttAAGGCAATTTTCTGacaattgattttgtttttgtttttaatgtttatctgatatggttatttttttctgggaaaa-gttAGTATAGCTCTTCATGCCactgttttgaa-------------gttcttct-CCTTGGATGTTTTTAATTAGTTCCTTCTTGTGGTTTCTCTCACTTGGTATAATTATATGGTTAGGgctctttgtagtataatttttttctcaacaaACATTTT-TGGCCACATCAGGCAATGGGATTGCTCCAGTCAGCAGCTCaatgacctcaaactcagagaAGCCCTGAAGTCGTGAATACAGATGAAGGTGGACCTTGGGAACCTGCTTACTCAGGACTTTTCCACAGATGGCTCTCACTTTATGTCCTAATTTATGTTTTGTGCAAGGAGTAACGATAAGAATAGTATTTCATTGAGGGTTTAGTGTGCTTT--GACCTAAACAGGCTGCATAGAATCTTAGAGAGGGAC-AAAAAGACCACAAA---------TTAT---------------Atcaataaaaaa------------atctttcaaattaaaaaaccaTTTAACATGATAGGACCTAATGCCTTATGTGTTGGTCCACTAATTCCCTGCCTTAATATTCATTCTCAGTCTCA----GTctctgctgtctctgt

a score=78819
s chr3           148186753 3854 + 160039680 TCTTGACAAAGGCTTGTTTTCCTTAGAAGGGAAAGGAATTGGACTGCTGACTCTACAGCAAACTGCCTTG-CTGACCCTAGTAATTTGATCTCCCCATTGGCCTTTGAGTTTCCGATAGACTCTCTCTCCATCT-TCTCAGGGCCAGCCAGCCTTTCTCCTTGGCTGCCCATGCCCTCAGCCATAACTCAGCTTCCAGAG-CCTCCGAGTTCCCTCTTCCTGAGCTCTCTGAGCATGCATTGGTGACATGGTTGCACATAACCCTTGGCCTCAGGGCTACATCTTTTCCCATCTATTCTTTGAACCAGGAGCAAATCTTAGCCACTATCATCATTCCTATTTTGTCAGTTAGAGGTTGTGACAAAGTTTCCAACCT--CAGGCTAGTCTCAGGCCTCCCCCCTCTCTCCACCCTC---------ATGGCAGCTGGCTGGCTCTGTGGCACAGTTACTTTCCATTAGACTT-TCAGAtgtgctcagcacctaatatattttccttgtcttacttccaatatccctgcaaggtgaatagtcttagcttctatttcccaatgagaaatgtgagcattaaggagatttgctcacttgcccaaagttatacaatgagtacaaactacaaatatataaactcgagtctgtttagttcaagagAAAAAGAACAACACACAATGCTAATTATTTTGCTCCTAGTTATAAGGAAAAGAGAGCTATAACTCTGG-CTATGAACACCAAGTAGAATAAAGAGTGCCCCCCGGAAGGAATTGCAGCTCAATAA---AGGAGACCCATTTCTTACTCCCTTTT---CCTGGCTAGCTTTCTAGCTTTTCCATTCTGCCTACTTATA----GATTA-TCACTGCAAGTACATTCA--------------TTTCAAAAGGCTTGCAGCGTCTCTCCTCTCTCCCACTCAGAACTGCAGGTCAATCCGTAACACACAACAAT--CTCAAAATGGACCATGTAGCCTTCAAAT--GAGTTTTAATTCTAAATTGGACAAGTCTTGGCTTTTGCTGACACATTTCCTTGGTAGTTTTAAATTTTT-CTTTCAGAGGC--TAGCAAAATTAAGTGAGAGGCAAGGCAAGGAAAAGTACGTG-TGAGTTTAAAGTACAGCGGACACCTTTTTCTTGGGGTCCATTTTCTTGA----------------TAAACACTGTGTAAATTAGGAAAGGGATTCTATGACG--------GAAGCACACTGTCAACTGACCTAAGTCTAAGATCAAGTGAAAG-------AGAGATTAGTCGGCTCTGTGAAGTCTGCATTAGCTCCGGGGACTTGAGCACA-----GCTCTTA--CTGGCTCTAGAAAAATCATAAACCTTAATATACACTCTTAAATCTCCCTCTATATTTTTGAATAGAAAGTTACATCAGAAAAATTTCCCATTAAAGATTACCATGTATGAGACTTTGGTTTTTATATTTTTAGCAAACTAGTCTCAAACTATCTCACGTATATTAAGTGTTGGCAAGTGATAAAAATT-ACAAAACAACAGAATTG---------CATGAAAGCAGGCTA----AAAGTAGGACCCTAGTAATGTTTCTCCATCAGACATTCAAGGCAGTGGAGAGTACAGTGCAGAAAGAAACATGTGGATTTTAATTTTAGAACAAGA-ATGGAGAAATGTTGAATGATGTATGTCATA---GGTGGGTTTGATGAGCAGCTGTGATTTATATTGTTTTCCACTAGGGGCTTCTCCATATTGGAAAGAACAACTCCTTATCTAACTCGCCTGTTTGAGTGACATC-TTTCCCAAAGACTCACCCGTTAACATTTAATTACTGTGTCCTTTTGATATTTTAAATATCATCTGAAGATGGTTTTGTATGTGGATAGGTAAG-AGTTTAAACCAAAATGGAGCAAA--TAAACATCAGAGTCATTTTCATCAAATCACCAAGGGGCACAACCATGGACAAACACAAACTGTCG-GATAAGCAGCAGCTGAATCTCAATTCCCATTCATGGGGCTGAGCATTCCACCCTTAATATATCTGTAAACACATTGTCATAAAATCAAACTTCTTGATGCTTCATCACTTGGAAATTGTG-AAGGGACCAGGATGCAGGAAATGTAATTTCCCTGTTGCTTACCTTGTGAAAATCCCTGTTTTTAATATCAACCGTATATGAAGTAGAGGGATGGCGACAACCATGTCTCTAATGCAATGAGAGCAGTGTTTCTTTTACTGAGTTTTGCTCATAGCAAAAATGCAGAAAGTTCTACGGAGACAAGACCAGACGTGAGAGGACTCCTGGTGATTG-TGAGAGTAGACAGTTAA-CATCCAGCATCTCAAACACTGGACAACATGCAAAATATGACCGGCATGCAGATGTTAACATGCAAAATATGACTGGTATGTAGATAACATGCAAAATATGACCCGCATGCAGATGTTAACATGCAAAATATGACTGGTATGTAGATAACATGCAAAATATGACCTGTATGCAGGTACTTAGACCAACAAGATCCTAGTGTACATTACATTAGTTTTTGTTATATAACTCACTGTGGCTCATTTAAATATGTATGTATGCTAAGTATCCTATAGCTGTCTATGCAAAACAACAGGCAGTCCAAAAGTTGCTCTTTTCTCTTAAGGAACTTTATAGTCTGTAGTGTTGAAGCATGTAAGATCCCAGAAGAAAATTTGCCCAATGACCtatttaaattaaatatatatattGTATGTATGTATAAGTAGgtgtgtgtgtttgtatgtgtgtgtgtgtACACGTGCTCATGTTCAtgtggaatcttgtagctgatagcaggtatcttactcactttctcttcaactcatacattgggacagggactctcaattgaactcgcagcatatcaacactctaactaataagctacacaagagttgccctatactctcttgcattctgttatttcaggatgctgccatgcctacttggtatttttttaggtgttagaatcccgaactctgatccttaagcatcgtgacaaatattttttcaagctggcacatctcttccagtccTAGAACTTTCTCTTTAAAAGCTATTATGTTCCTAATG--CATTACAGGTTTCATATTATGACAGCATAAACTG-TGGTTGACCAAGACAGTAAGGACTAATCCACTTAACTCTGTTCATGAGCATCTGACAAGAGCCAGAGACCAGTTCAAATGAATCAAAGACAACATTTCTCTCT--------TTTTATA--TTTATCCCGCCATATATTT-ATTTAGAAATTATTTCCAAGTTTATAT---CCACAGATATTTTG-AAACCATTGATTTAGCAAAACTGTCAGTGCTTTGCTTAGACTGGATCATTCCTTAAAACTGCCTTTAGGAAAATTTTACAAATGCATTTAATGCATAATAT--ATAAATAGAAATGTATTTAAGTTGGGCAATTA------------------TATTTTCTCTTTATGGAGTTCT---GATTTCATGGATGACAATTTCAAATTGAAAAGTACATTTGTCTTGTGTGAAAAAAAACACAAATAAAATTATTTTACTGATGCTTATCTTCTATTCATT---CATGGATGAATTGGGACTTCATCTC-CATCTTGGAAATGGCAGAGTGCTTTTTGACACACTGACCAATTGTGCAACTCATGCCTCTTTGTTTTGTCCCAGAACAACATATAGGGCCTTCCATTTTATGGTGTTATCAGG-----GCTTGGTAG---CCAGTTG----TTCACCAGAGCTAGAGAC-TTAGCCTCTTTTCTCGGAAATTAAAACCAGACATCTGACCCCATGAATGATATTCTACTC----CTCCACTT-GCTGAGAGTCCCTTAGGCCCTTTTCACTTCCCACTGGAAACTTTGCTGAAATCCTTAGGACATAGACAGGAACTTCTCAGA-GTCTTGGTACACACGACCTCCTGAAACACAAGACTAGGGTTACAGAGTCTCAGAGAGCTCC
s HiC_scaffold_1 134867294 3487 + 233722169 TCTTGATA--TGTTCATTTTTCTTAGTAGAGAAAG---TTTTACTGCTAGCTTTGCAGTGCACCGCCGTGGCTGACCTGGTCAATCTGTGTATGCCATTAGCCTTTGAGCTCCCTGCTGATACAC-ATGAATCTGCCTTAAAG---GCTGGGCTTTCTCCTTGGCTGTCTGAGCCCCTGACTGTAACTCTACTTTCACAGGCCACTAAGTTTTCTCATCGTTGACCCTACAGGCGAAGGTCAGTGACATCATTGGATAAAACCCTTGACCCTGAGTCAGCAACTTTAGCCAACTGTTCTCTTCCCTAAAAGCAGGCT---GTCATGACAAAGATTTCTAGTTTGGGCATGAGAGGCAGAGATGAACATTTCACCCTGTCAGGCTAGCCTCAGCCTTTCCTCCTGTTTCCATTCCCCTCCATACAATACCATCTG-------------TACAGCTGCTTTTTACTAGATTCCTTACATGAACTTAGAAT-TGATAGATTTTACTTCTCTTCCTTCCAATATCCCTGCAAGGTGAGTA---TTAGTTTCACTTTCCCAATGAGGAACGTGAACATTAAAAAGATTTGTTCACTTGACCAAAGTTGTACAATGATTACAAAGCACAAATATATTAACCTAAGTGTCTGTAGCTCAAGGGAAATGTAGCAACAGGCaatgttaattattttgctt-taattataaagaaaac----cCATACCACAGAACTTTGAATCAGGTGTAGAATAAAGACTATCTA--GAAAAAAAACACTGTTCCATAAGACATGAGAGCCATTTCTtaccctctttttttccttattacctacgtatctttatttttttttctacttatatATGGATTAATCCCC-----TACCTTCAAGATGTAGCAGGACCTGCAAAATTCTT-CAGC-TCTCTTCTCTCCCCCACTAAACATTACAAGTTGGTCCTGAGCACAAGGCTGTTTCTCAAAGTAAACTGccaggacttcaaatcaaagcTCTCATTCTAAATTGCACAGGTCCTGCCCTTTGATGACacattttcttggtatttttaaatttctgttttcagcAACAGTAGCAAAATTAACTGaagtcaaagggaaaaaaaaaaacttaacaagTTTAAGACACaggaaacacattttattttgattctaatttttttaagtcATTAATGTACACTCAACAAAATGTGAATTAGTGAGCAGACTACATGAAGAAGAAAGGGACAAACAAGGTCAGTTCTACTAATTCTTAGG-AAAGTCAGAACAGCCGAAGAGGTTATTAGCCTCTACAAAATCCTCATTTGTTTAGGAAAATTATCTACACTGAAGCTATCAGCATAGC-ATAGAAGTATCATTACCTTCAATAAATGTTCTTAAGCCTGAGTGTATTCTTCTAACTCAAAAGT---GTTTGAGAAAATTTCCATATAATGTTGCCATGTACTTGACCCTAATTTATCTTTCTTCAAAACCTGAACTTTGAACTAAT--ACATACAGTGTACATTGTCAAGTGCAAAAAGTTTATAATGCAATAGAACTGTGTAAAACACAGGAAAACAAAGTACCATAAAGTAATATCTCAGTAACGCTTATACATCAGAAATATAAGACAATTGGGACTAGACCTTAGAGAAAAACATG--GATTTTAATTTCATACTCTGAGATGTAGAGCTGT-GAATGGCTTGTGGGATATATGTTGGTTTTGATTGGCTGCTATAATTTCTATTGTGTTTCATATGGGGATTCCCGGTATTCGAATG--TGATTTCTTTTTGAAGCCTTTTGTTTGAATGACATCCTTTTTGGAACATTTATTCTCTAAAATTTAATTAATGTGTCTTTTTGACACTTAAAATATCATCTAAATAGGTTTTTGTGTAGGGATGGGTAGGTAGTTTAAACCAAAGAGGATCAAAGATAAACTCTGGACTCATTTTTATCATACTGCCAAGAGACACAACTGTAGACAAACATCCACTGTTTTGATAAGCAAGAACTGAATCTCAATTCCCATTCGAGGTGCAGAAAATTCTGCCCGTAATATACTTGTAAACATATTGTCATAAAATCAAACTTCTTGATGCTGCATCACTTGGAAATTGTGCAGGGGACCTGAATCTAGGAAATGTAATTTCCCTGTTGCTTACCTTGTGAAAAACCCTATTTTTAATATCAACCGTATATGAAGTA----GATGGTGACAAGCTCATCTCTAATGCAATGAGAGCTGTGTTTATTTTACAGAGATTTGCTTACAGC-AAAGCACAGCAA-TAGCACAGAGAGGAACACATACTTCATGGGTTTGTTACTGATTATTTTGAGTAGACAATCAGTCTTCTAGC---------------------------TACACTTAGAATGCAG-------------AAATATG------------------------------------------TATCAAcatgcaaaatac--------------------------tttcactttcag--AGATATTTAGGTCAAAAAGAACACAGTA-----TGGATTAATTCTTGTTATAcaa----------ttcatttaaata--aatgtattaagaACATTCTA--------TATGCAAAATAGCAGTCAAcctaaactttttctttctttctcatcaaGCATAATGGTATGCAGTGATGAAGTACA---------------------------------------------------------------GTACA-------------------------------GTACA----------------------------------------------------------TTAAATTCACAGATGGAAACA--------------------------------------------------------------------------------CTGTCATT-------------------------------------------------GAAATTTGA--------------GAcaa------------------------cttttagt--------tttatttttaaaagc--ctatgTGTCTTATGAACATTATATGTTTCATTTCAAACCACCAAAAAAAGATAACTGAGTAAAAT-GTAAGACAAAATCCACTTAA--AAGTTTATTAGCACACACTTTGAACTCCTGACTATTTCAAAATGGTAAATGGCAGTGCTTTTATCTCTGGTATATTTTATGGCTTTATCCTATCACATCTTTGATACAGGAATGACGTCCAAGCTTATATGACTTTCTGGCACTTTGTAAACCACTAATTTAGCCAAACTATTAGTGGCTCATTGA-----GGGCATTCTTAAAAATTTCTCTTAAGAAAATTTTGCTAATACTCAAAAATAACAATGTTAATAAAGTGCTAATGACTGAAGTTAGCAAATAACTACTCCTTAGAacaaattctttattctttcgtgagatctttaatttttatacacATCAATTGGGCATTG-GATGCTTATTTGCCTGGagtaagaaa----acaaatgaaatcttcCTACAGATGATTATACTGCGTTCCCTAACCCTAACTAAATTGGAGCCCCATCTCACTTCTTTTTACTAACTAAGTGTTGTTTGCAAAATGTTCCCACTCTGCTCTTAATGCC----CGTTATGTCACAGTGCCCTGCTCCACGCCTGGCATTTCATCACATTGTCAAGGCAAAGCCTGATAAGTCACAGTTGCCTCCTTGCAAGACCTAGtggcttttgcttcctttctcaGGAATTAAAACTTGACTTCTGACCTCATGACTGACATTCCACCCCCGACCCCAGTCAGCTAAATGTTGCCTATTCTTTTTCCACTTCCT-CAAGAAGCCTGGTTAAAACCCTTAATACAAAAATGTAAACTTCTCAGAGGCCTTGTCATACACAACCTCCCACGATGCAA-CCCAGGTCCATAGAGTCTCAGAGAGTTCC

a score=27855
s chr3           148194275 2358 + 160039680 TCTAATGGGCCCATTAGCTAAGCCGTGAACAGTTTGCACT-TCA--CAGCACATGTTCCTCTGAATGGAGGGTCAG-AAGACTCAATGGTTCCATTGTGTATTAATAGGGC-TTGCTAAGATTAATTTTTCCCCCTTGGGGAGTGATATGAAGTATGCAGAAAGACGCTCAGTTTCCA-CAACTCAGCGCAAGAA----GAGTAGGAGTGGCCATGAGAAGCAGCAGACTCTGGGCGTTTATTTCCCATCAGCCTTGAGGTTGGTTGTGTACCTGTGGAGGTAC------CAGTAAGATGTGCT----TGAAGAAAAGATG---GCATGGTGGGTGCAC--AAAGGCAAACATTTGTTAGTGCCATGAATTCATGGCTTTGCACATGAACACTCCAGTCGACCCAGGATTCACCTTGAGAAATCTTTTATGGCCAGTCACAGGTTG-----TCTGTGCTCTCTGGGCCATGTATGCCACCCAGGCTCCCTTTAATCATTCTGCCTCCTGCCCTGACTTCCATGCCTGACCTCTGAAGGGATTTAAGACCAC----TCAGGAAA---------GTTTTACACAGCCTCGTGGATTCC-TGAACATGAAGGGCAGGTGTATTAAGAGGAGTTTTTAAACAAATCTACCGACAGTAAATCCACCATAGGAGAAACTCACTTTGCTTTATATT--GTTTGGATATTTTT----------TCTTTC------------TGGAA-CTTCCATTGAAAGGGCTCTT-ACTTAGAAAGTGCTCCCAGAAGGAAG-GGTGGACAGAATTGTCTC-TTtctgtcccttactaatga-gtgacgtgtcacaaactaccga--cttccacagcttctggtttatttccactaaaactggaatgatagtcatccctatatcatagaatggttggaggaacaggtatgtatagaattcattgagcagtatttgacaaatagaaagtgctcatcaaatTTAGCAGCTGTTCTTGGTATCAAACTCTGTCAGGTTTCAAACCTCACTCTGCACAGGAGATCACAGGAACTGAAA-----------ATGGAG----GGCTAGAGTC-CCTAACAGCTT-GCAAC-----TGTTCACATGTCTCAGGCAGTTTTTTCCCACCCTTACTTGAATCATTAACCA---TCATCTCCAGGT--CGGTGGTCCACATAGAC-AACTCTGTCACATTTTACATACAC-----ATTTTAGGCAT--GTTCTTGTGTTGACCCAAATCCACCCCTGATTCTCCTTCAAAGCA-AAACAGTGCCTTAGTGGCCAGCACAGTGCCCTGTAGTAGCTACATTGCCAGTAGCTGAGTGCATCTTTGTTGAATAGGTGAGGGAATG--------CATCAACATATGAGGGAGAGCTTCCATGGCTTGAAGAAACCATACTTCAGAGCATCTTTCAGGACAA-TGATAACGGTT----CTACTTGTTACGTTTAATTCTGCATACTACAGTTTAAACACACTCTTGGAGGAGAGTCATAGGCACTGGTACCCTCCTTCTGATAAATAAAGCAATTTCT-AGTAAAGAAATTCAA-TTCTCATAGTC-------TCGACCATGTGCTTGAAGGTATGTCTTTTCTTAAATGGAAACCTGCTTTCAGGAATTG----AAGATGGcaattctgttttaaagaaaatagt--------ttactcagggctaaatatgagcgatcatggcttgactgtatggattccagttattct-gagtgacatatcccactatgggagaggttatatgaactttcatagacacggaacaaaaatagtcataaatcaatatg-tcaggagagacatccgtaggcaggggaa--------------agcaaggtagagaaatgttttctgtgggtttcagatggtatatcgtggtatcattcgcttaaggc----tggaggtcagaggtcgacagagcttaacaatgtattacaggagatttccctaatagtc----tctgga--atgtcaggtc------------atgtacagaaggtaa---aagcgaattt-----aaactat-------------------------aaaacaagtctagg----agatctcacagtaatttt---------ggctctcagctcactata---ctatatctctcc----------acaatcctgaTGCTATCACAGCTA---AGGTCAAACCATACTGTAG----GATCCTTAATATAGATGTGGCTTCTCTGGAGACCTTTAGTTCCACACAGCTGTTACGACAATAAAGAACTTGGGATC-AACCTTATATTGATT-TGCTATATACTGAATATAATTGGTACCATGTAGCTTTCACAACCTAGCCAAAGTGAAGCCCAAGGACTGGTTAGAACTGCTAAAACCATTCAC----AATACAGAACA---TTTGTCCCGGAAGAC------------ACTATTAAAAATGACACATTAATACTTATTTCTGAAGAACAGAATAACAGGCTTTAAAGGAG---------AATTAG-GAACACGAGGTTAAAATAATGTGGGGAATACTAAGACGAAGGTGAGAAAAATAAGCAGCGTTAAAAATATCTGTAACCTAACTT
s HiC_scaffold_1 134874345 2525 + 233722169 TCTAATGAGATCATTAACCAAATACCAAA-----TGCATTCTCATCCAGAGTTTGCTCCTCTGAATGCAgcatcaataaaattaaatgatac--tcATATTTGAATAGGACCTTGCAAAGACCtctgttttc---tttggaaatattGTT--GTACAAGgtcagatgctcatttttcagAAACAGAATGTGAGAACTAAGatcagaaggg---aaaggaggagatgGATTGTTACAGCTTAGTTTCTGTCAGTATTGAGCTTGGCTGTATATTTATGTGTGCCCATGCTGCTGGCAGACAAACTCCAGTGGAGAGAGGCTGTTGGTGTGGTAGCTGTATTTAAAAACAA-CTCTAGTGAGT--TGGGAATTTATGTCCTTAGAAATGATCAGACCGATTATCTTAAGAAGTGTCTTTGAAAATCTTTTAAGACCA--CAAAATTTGAACACTGAGTATCCTCACGGCCAGG---GCCTCCCACTCTCCATGTAGTCATTCTGTCTCTCAATCCAACTTCTGTGTCAGACATCTGAAAGGATTTAAGCATCCAAAGTTAGAGAAGTACGCTATGTTCTCCACAAGTTCATGGATTCCATGGAAACTAAACACAAGTGTATTAA-AGGAGCTTTATAacaaatatgtaaacaaaaaatTCTCCGTAAGAAAACTCCATTTCAGTTTATATTAAACTTGAACAGTTTTCTCCAGCTGCTCTCTCAGTAAATGGTCTTGGAATTTTCCACTCCAAGAATTTTTCACTTCGG----TCACATAGACGAAAGAAGTGAGTGGCTTTATTTTGTCTCTACCAATTACTAACAAGGTGACTTTGctcaaattatttaacttttttgagcATCAATTTTTTTATGGACAGAATTGGCACATTGATGGTACCTGTGTCATGGatttattggaaaaata---atatatgtaaattctTACAAAGCATCTGACACATTGAAAGTGCTCAGTGAATTTATCTATTGTCCT-----------GTTACCAGATGGAAAGTGTGATTGTGT------GAttataataaatgaaatgtaCAGGTGTAAGGAGCCTTGTCTAAAGTTACACAGCAGCTTCAGAACTAGAGTAGTTACTTAACTCCTCCTGTTCAAATTCATTCTTCCTTGACTCAACAATCAGTTCCACCTCTATGCTGCGAAGTTCCATGTACACAAACTCT---AAACTTTATTTAAACACTGGATTTTGATTATAAGCTCACATCTTGACTCACATTTACCCTCATCATACTCACATAGGAGAAAAAATGTCTTAGTCCTTAGcac-----------------------------------taaatatttgttgaataagtaagtaaatgaatgaatcaatcaatATATGA---AGACGTTTTTTGGACTGAGAAACTCATTCTTAAAGGAATCTTTCAGGTGAAGTAATGAAGGTTATTCCCATCAGttttttatacttctttataaTATAGTTCAAACTAATTCTGAAAGGGCAAGCAGTAATATT-GTAccacttctttaataaatgatgcaaTTTCTGAGCAAAGCAATTCAATTTCTGCTAGTTGTAATTATTGGATATCTGATTGCAAGATTTTCTTGCCTTAAATGAAAGCTTGCTTTTgtgtattaatataaaataatggcTCTGCTGTAATGGAAATAGtaaattagcttattttgaacaaaatataaGTGACTATGGCTCTAGAATACACATACAAGTTCTTCTGGAATGACATATTTTGCTAT-GAAAAGGTTACATGAACGTCTATACCCACAGAACAGAAAAAG-CATGAATCAGTACGCTCAG----TACATTATCAGGAACTGCAAACTGATTGGTCTATAGCAAAGGTGGGAAGCCCGTTATACAGGTTTCAGATGTTACCTTAGCACATTGTTAGATTGTGGTTTGGTGGAGACCAGAAGACTTCTAAACTAAGCACTACCTTCCTACAACTTTAACTAGGAGTCATGGTATGGAAGACATCAAGTTAAATAACTATAAAAGTATTAAAGATAGGCcaagataactttttaaaaattattttacctaGAGTTTCTCCCTCTCAAAAATCAAGCCAAGGTTAAAGAGTCTATAGGATCTTTATACACatgagtattttgttttttgtatgtctattttggtaccagggatcaaacacttATGAtgttatgcttgccaggcaggt--atttgtgctgctgagctaaacccccagctacATATGGTTTCTTAA--------CAGTTTCACACAGGAGTTGCTACAATAAGGAAGTTTAGATCAAACAACCAATCGATTCTGGAGTGTAATAAAAATAATCGCTACTATTT-TCTTCCAATATCTAAACAAACTGATGTCCAAAGACTTTTCAGGTTAGC-ATAACTATTCACTTTAGTTATGGAACAGATTTTGCTCTTAGAGATtaagcaaaccaaaaaaaaaaaaatgacatgttCATATTTGGCTCTGAAGACACGAAgggcaaaa-ttaaagaaggaaaatataaattagcaaaaaatattttaaaaaaa---gaaaaataataagatgaAACCT-GATAAAAGGGAAACATTTCTAATTTTCATaacctgattt

a score=29695
s chr3           148199490 750 + 160039680 AAAATTCATTTAGAC------AGTTACTTGAAACTGATTTTTTTTCTCCAGAGTACTCATGGAAAAGAAAGTATAAGTCCAGTCCTT-------ATTTTTCTCTGTCTTTAC---AAAAAAAATTTCAC-----------ACTTTTAACAGTTT-----TGTATTCTTTTCTGGAAGAAAATAGATCTATCAAATGATAAATCTTGAAATAAGGA-GAAAAAAATTTAAATTCATTATTACATTTAAGAACATTAGCCCTTTATCCTGACAAATATAAATAAGTTTGTTTTTGCTTCTGATTGCAAATAATCTCCATAATAGCGTGGTAATGACTCAATGCTTACACACCTACCAGACAAAACCCTCCATAGGTAGAAGCCTTCAAGGATACATTAGATCTTCTCTCTTGTCTGAAGGTCAACTGTAATTATTCACTTACCGGACTCCCCAGAGCACTGGGTAGAATGACTAATGTATCATTGATAACTACTTTAAATGGTACATATTAAAATCCAGATTCACATCTTGTATTCCTTTATGGAAAATCATTGAAAAGGTAGGATAATGAAATAGTCTTTGGAGAC--CAGCAAAGGAAAAAAAAAACTGTGTGAACGGCTGAGAAGCCATTTATAAAACTGAGCATAGTAAGAAGGGACTGAAGCTGCT-TAAAGTTGTGGAGCCTAGTGGCATCTTAGCACATACTCTCCATCTCCATGAGGTCCCATCAGCTTCAGCATCT---TGCAAC----TCTTTAGAAGAAACCTGAATCTGATAAGTGACAGCTC
s HiC_scaffold_1 134877514 783 + 233722169 AAAGTTTGTTTAAATGATTGTAATTTcttggaaaaaatttttt-----caaagtaatcATGGAAAAGGAAATAGGAATTCATCTTTTGTTtgacatttttttatttcctgactttgaaaacatttttattagacATTGTTGCTTCTGATGGCTCCACAGTATGTCCCTTCCTGAAGGAAAAGAGACCCATTAAGTAATAAATCttgaaacaagaaaggaaaaaactaaaattcaacaTTATGCGTAAGAACAGTAGCCCTTTatc-tgacaaagaaaaataagagtgtTTTAGTTCCAGGTTTCAAATGAGCTCTAAAATGTCATGCTAATGACTCACTGCTTACTCACCCAGCAGCCCAAACA-TCCCCACTTGGAGGCCTTCAAGGCTGTATTAGATCTGCACT--TGTCTGAAAGTCACCTGTGATCATTCACCCACCCACCTCACAGAAAGATGGAATGCAATAACTAATGTATCACTGATAACTACTTTAAATGGTACATATTAAAAGCCAGAATTACATCCTGTGTTCCTGTATGCAAAGTCACTGTACAGGTAGGATAATGAAATAGTCTTTAGAGActttagcaggaaaaaaaaaattctgtctgaATGGATGAGAAATCATTTTTAACACTGAGCTCCCCACGAAAGGACTGCAGCTGCTATAAAGCCTTGGCCCCCA-TGGTACCTTAATAAATGCTCTCCACATACATTGCATTACATCACCCCTGTCATCTGTACACAACACTATTTCTTGGTGAGAAGTGAGTGTGATAAGATGCAGCTC

a score=23205
s chr3           148205448 808 + 160039680 TTGGATAATCT-----TGACTAGAAGACCAGCTACTATCAGCATCATATTTACAAATGTGTCTTTATTATTGTTTAAATCTGTACTTTTAAAA-GGCATATCTTAAGTATACTGAGTTATAATATA--AAGCAATTTTAATAATATAC---AATTTGTATTGCTGGGCT-GTACCATGCAGTTGCACAATTAGCCTAATTTATTAATAA-GGAGCAACTATTCTATTCCCTCTTTGACACATGGGATACTGAAAATCACTTACAGCCAATCTATTACAAAGCCTTGG-TTAAAGAAGATGTAGATATGAGTAAAAAAAAAAATCACAGTGTGGTTCAGTTATTTTGTAGGAGGCTGAAAAGCTTGTTATGTGCTCCCTGCTGTACCAACTGCACATTCATCTTGAAAACGAAGTATTCTGCCAGGAGAGGTGGCACTCACATTCACAAAAGAGACACCGGCTTTGCTTTGCTGCACCACACTTGCTTTGGAGATGTACAAAAGAGGAGGCTGAGCCATTCTGCCCAGTGAGAGGCTGTGTGGGCTTCGGT-AAATCAGACCCTGCATGGGGAGCTTAGTTTGAATACGTTAACCTTGAGAAATAACAAGTCCTG-AAACTTGGAAAAATATCTAAAAATAAAAACAAGAAGTAAATATAGGACTCGCTTTTATTCCAGGCTCTGAAGTCCACATCTATCACCTACTATAATAGCATTCTGTCTAAATTCAAGC--------AACAGACTATT-------TGCTTTGTGTTTTTGCTCTTTTATACACAGCACAACTTCATGTCTATAACCTCACTAAGTTCATTCTAATATTATATCTA
s HiC_scaffold_1 134880360 785 + 233722169 TTGAATAATCTCCATATAACAAAAATACT-----CTATTAGTATCGtgcatttaaatatttctc----atttctttaatctACTCATTTATGATGGTATAA---GAATACATTCAGTTGTAGTAAACTAAGCT-TTTTAGTAACACATTGTAATATTTTTAGGTGGATTTATATCATATAGTCCCATAATTAATCTAATCCATTTACAGTAAAGCAACCTTTATCCTCCCGTTTTGATAAATGAAATTCTTAGTAGTAATTACATAAAATACATCATAATGCCTTGAATTAAAGTAGATAcagaaataaattgaaacaacAA-------ATGGTGATATTATTTTGCAGGAGGGTGAGAAGCTTAAAAGG-GCTTCAGCCAGTATTAGTTGCACATTCATCTCAGAAAGTAAGTGCTCTGCCAGGAGAGCTGGCTCTCACAGTCACAAAAGAAACACAATCTTTGCTTTGCT-----ACACTTGCTTTGAAAATGTAC-ATAGAAGAGGTGCAGCCATTCTAATCAGTAAGATGCTCCATGTGCTTCAATAAAATCAGATACTTGGTGGGAAGCTGAGTTTGAGTATGTTAACCTTGAGATATAGCAAGTCATGTAGGCACTGAAAAGTgtctaaaataaaagacaagaagcAACTA-------------TATTTCAAGGCCCGAAATTCATGTCTATCAAATATTGAAACAACATTCTTTCAACTGTCCATCTGCAACAAAACAGACTGTTACTTCACTGCCTTCTGTTTTGG-------------AACACAAACTCACGTTCACAACACCTC-ATGCCCATTTTAATAATATTCCTA

a score=79722
s chr3           148207757 5043 + 160039680 [encoded data, 5435 characters]
s HiC_scaffold_1 134882140 4857 + 233722169 [encoded data, 5435 characters]

a score=62436
s chr3           148216752 1828 + 160039680 TTCATTTCTTTTGAGAACATAAGTGTGTCAATCTATTACACATCTATATTTTGTATGA-TTTTTGCAACTAAAATATCAACAGTTCTATTAGTATCA-TCTTAATGTCCAGCCCAGGGGTTCCAGTATCTAATAATGAAGACCCCCCCCCCCCCAGAGATCCAGGGATGTCAGGAAGCAGTCTCCTCTGTCCTTGGGGAAATACCATTACAGCTGCAGGATATTCAGGAT---------CCCTTTCATTATATATTCTCCTTTATCATAATTGTGCTCAATGGCTTAATTTTGATCAACTGCAAAACCTTGATCATTGAAAGCTGTTCTGACAGATGATAACTCATGTTTACACTCTCATTTAGAGAGCTGATGAAATGATTCTGAAGATTGTGATTAGAATTTGCTGTAATATCTGGTAGATTAAAGGCAGCCCCCAGCTGGTGCCCCAACCCTGGCAACTAAGGAAAATGGTGAGTATGAAGATGAGTAATAATATGCATTATCTTGTGGGAGAGACACGTTTAGTGAAGTTC---TGTATGCCTTCATGTATTATAAGAAAATGAATGCACTTTGCAAATCCTTATACACAACAC-------CTTCTGCTGAACTGGTGTGTGCCTTACATCAGCCACAATTGACCCTGCATTTAGCAGGGATAGAGCACAGGACATATCTGTCCAACTGCTCTCTGCCCTGTCGTCTTGGCATGGCTCAGTGGTCGTGAATGCCAGCTGAGGACCTTTCCCTCTTCCATGTCACCATCTGGCTGGCATTCCCCTTCAGTCAACTTTGATTGGCTTCTGTA-TTACTCTAGAACTCGCCAGAAAAAAAAAAGAAAG---GCCCACACATTTGTGATTACCTTTTCTCCTCACTTAT--CCCTTGAAAATGTGTA---AGACCTTTAGCATCCTGAAGTCTTTA---CATTGGTTTGTTTTGCTGAAGGCACATCTCCATTGCAGTATATcacacacacacacacacacacacTCTATAGCTGGACTCTCCTGCCAG----------TATCACCTACCCCCTCTAC--CATTGGGATTTCAATTTTTTACCCACACAGTGTCAAGTGTTAACTGTGTTCTCTACAGGTGGGTGACA-TTGTTCACCTTGATT-AATTTGACTTCAAAGACTTTTTTTTT-ACTTTTATTTTGTTATATTATATTGTTATGACTTGAAAACCTACTATATTTACTTTTGTGGATCTGCCTCCACCCAGTGAAGGATTGTATGTTGGTTTTGTAATAACAGATGCAC------AACTCCAGTGAAAGCT-----------AGATCTATTTA---GCAAAGTCAGCTGTAGTAGAAAGGTGAGCTTCAAAACAATTC--AGTAGAGCATGTGTCCTTAGGAAGGGATAAGATAGAAGGTGATCCACTTCTCTTTCATCACAGCATGGTGCTAATCAGCTATTCATTCTAAATGCTCCATTAGATGAGCTActgctaacaccactctacttaatagtcaattggtgtctccattagaaattcattttcaggggttaatatgtcaatattccactttgtactagctctgaaattttgtatacaatattgaagccTTTTTAGGAAAAAAAAAAAGACTTGCAAGGGAGTGAACT-TTTGTAG-------GTAAGCTCTAGTCTTTAACAAAATACGCATAACCAGTTTCTTTCTGCTTCTTCAACAGATATGTATTGATGGCCATTTGTAAACTGAAAATGTTAC------CAAAGGG---------------GAgtgtgtgtgtgtgtgtgtgtgtgtgCATATGAAAGAATTTTAATGTTGATATGAAGCATCAATTTTTATCTGAATGCTGAACTAGATTCTCCATTTATTTAAACATTTTATCTTTATTATTATTGTATGATATGTG
s HiC_scaffold_1 134891602 1855 + 233722169 ttaactattttcaagaagatggGTTTGTCTATAGAGTTTACATCTATGTTGTTTATAAATTTCTGCCACTGGAACTCCAACAGTTCTGCTGGTAAAAGCCCTGATTTTTATCT---GAGTTATA-TATCTAATAATAGAGTATCCT----------------AGAAACATCATGAAATGCACCCAGTTACCCTAAGGGAAATTCCACTGTAGCTACAGCACTTTCTGGATGCACAGCAATCATTTTGTTATGTACCCTTCTTTATTGTAATTTTGCTTAAAGGCTTAATTTTGATCAATTGCAAAGCCTTGATCACTTAAAGCCATTGTGACAGATGACAATTCATGTTTATACTCTTGTTTTGGAAACTGATGAAATGATTCTGGAGATTATGATTTGAATTCAGTATAGTATTTGATAGATTAAAGACAATCCCCAGCTGTTGCTCCACCCCTGGCGACTAAGAAAAATGGTGAGTCTGACTATTAGTAATAAGAAGTGTTCTCTCATATGAGAGACAAGTTTAGTGAAATTTTAATGCAGGCTTTTGTGTATTATAAGGAAATGAATGTAATTTACAAATCCATACACATAACACATTGGAACTTCCACTAAACTGTAATATGCCTTAAGTCAGCCAtgattgaaattgcatttgaCAGGGAGAAAA-ACAGTATTTCTCTTTCCAACAACTCCCTATGTTGTCATCATGGCATGGTTGGGTAGTAGTGAGTGCCAGCTGAGAACCCTTCGCTCCTCTGTGTCACCATCTGGCTTTAGTTCCACTTCAATCAGTTTCTATTGGCTTTTTGATTTATGCTGGAATtcacaagaagaaataaaggaagtttGCCCATACATTTGAGATAACCTTTTCTCCTCAATTCTGCCCCTTGAAAATGTGTACAGAGAAATTT-GTATCCGCAagcttttatttcactcttaCGTTTCACCAGCTGCA------------AATATGTCAT-CTTGCAAAATCTCACAGGCTCTTCTGCTGAACTATGATGTCAGcagaaaactatgttttcttcctgtttttctacAATGTGATCTGAATTTTTG---TTTACACTGTCAAATGTTAAC--TGTCCTGTACTAATAGGTGATAGTTGTTTCTAATAATTCAAGTTAGTTATGAGGCCTTTCTTTTTAACCTTGAGTTTaccccattttgtt-ttaaaaattgatatcaTTCTCTATTTACTTTGGGGAGT-----TCCA--TAATAAAACATTGTATGTTGACATAGTTATGAAAGATGAACTGATTAAATTCGTATGAAAACTGTATAATTCCAGGATCTACCCACTCAGAAAATCAGGTACAATATAAACTTGGGCTTCAAAACAATTTCACACAGAGTACAAGTCCTCAGGAA-GGATAAAACATGAGGTTATTCACCTCTC-CTAATCACAGCATGATGCTAATCAGCTATTCATTATAAATTTACCGTTAGAAGAGCTACTGTGAACGCCACTCTGCTTAATGGTCAATTGCTTTTTCCATTAGAAGCCCATTTTCAGGGTTTAATATATTAACGTTTTACCTTGTGCTATATCAGAAATTATACAGTTAACGTTGAAGCC----------AACAAACAAGACTTG-GAGAAAATGAATTATTCTTAGTAACTCAGTAAACTGTTTAATTTAACAAAATACATATACCCAGATTCTTCTCAATTATTCAGCAGATACTTATCGATCATCTCCCATATGCTGGGAACTCAACAAACCACAAGGAGCTTCTTTCTGACTACGAaggtgagtgtgagtgtgtatatgtgtgcatggtAGAGTTTTAGAGCTGATTTGGACCACCAGTTTTT---------CTGAAGTATGGTCTCcaac--tttcaaaatgaaaacattaatataTCCAGAGGATATGTG

a score=27922
s chr3           148219815 865 + 160039680 AGAACTTTGCCGATAGGCATGATAAAGCTGTGATTGTGGAGACACGATCCACACGAAAGGGACGCTTGTGGCATCGGCTTCTCAGTGGGTACCTGGTCATGTTCAAGTAGTCCTTTATCAAAAGCCTATTA---ACATGAATCTCGTGGAATTTGCAACTCTTCATATTGAATCAGGCCTTGGGGGGAAATGTGCAGTCTAAATATGGAAGAAAATCTGATGTTGGAAAAGCCACTCA-GTGGAAGAAGCTCCTGCTCCCACATTCCCAAG-CCTTGAGAAAGGAACGAGCCGACCCATCTGCTTTTCACTTTAATTCAATGAGGTATTTGATTTTCAACTACTGTCTCAGCACTGTATTAAAACCTTGTTACTAGGGAATAAAAGAAAATTACCTGTAATCCCCTTTCTGCAGAAAGCGTGTTATTATAATGGATTTCTCACGTTCGTCTGCCTGAGCTGCTGCCGAGAGAGAACCTC-GGAGCTTTAGAGCACTCAGGCTGCTACCCAGCCTTGCAGGC-----TCCTTCCTGGCGCC-----GGGCTGCAC---TCACTCACCTGTTGGTTGGCAGGAAAAGACAGAAGGCTTGTGGAGCACAGTGACCTTGCATGGAGTTCA-GCCAGGGCCAGGTGACAGGGAAGCTGGCATTAAGATAAAATTCCAAATGAC---------TCAGTAGAGCAGACTCATCAAAAGATATCCCCCACATCTACCTACATTCTAAATCTGTCAGGGCCACACAATCAGAGCTGACCTCCCT-CGAGAATACTTTTTGAGGTATCATAATCTGTGGTCACTATTCAGAAGGGTTGTGAATGAGAGAATTTCCGCAGAAAACCGGTCCTGTTTTAAAAGGAACTTTAGTCCTAGTGGACAGCA
s HiC_scaffold_1 134893952 840 + 233722169 aaaaactcacTGACAGATATGATAAATTTGTGATTGCTAGTACA---------------GAATGTGTGT---------TTCTTAG--AATATGTGGTCATTTTCTAGTG---------TAAAACTCTATTATAAACACAAATCTTTTGGAATTTGTAATTGTTCATGTTGAATGAAGGGTTGGGGGAAAATGTGCTTTCTAGATACAGAAGTATAAGTGATGTTCAAAAAATtacctacaaaaaaaaatctttaacttCTATGTTTCCAAAATCTTGAGAAAGGAATGAGACAATTCAT--GTTTTTCACCTTAATTCAATGAGGTATTTGGTTTTCAACTACTGTCTCAGCACTGTATTAAAACCCTGTTACtagggaataaaagaaaattacctGTAATCCCTTTTCCTCAGAAAGCATGTTATTATAATGGATTTCTCACTTTAGTCTGCCTGAGCTGCTGCCTGGAGAGAACTTCAGGTGCTTTAGAGCCCCAAAGCTGCTAAGCCACCTCTCAGGCAGGCGCTGTTCGCAGCCCCACTGAAGGAAACACACATCACTTcagtcctggtaccaaagaaaagacagaaagctgGTGGATTAGAGCGACCTGTCATGGATTTCATAATTTAGACAGCTGAAGGGGAAgctattgctgagacaaaacttTGGATGATAATTCTGCAACAGAAGAGC--TTTCTTTAAAAGATATCCTTC-TATCTAAAAATATTGT---TCTATCAGGA------GACCAAAACAGGCCACCCTGAAAAAATAATTCCTGAG----cattcttccaaatagttattcACAGGTGATGAAGAGGTAGGAATTGGTTTGAAAAGCTGTccc--ttttaaaaagacatttatgCCTGCTACACAATA

a score=16238
s chr3           148221507 676 + 160039680 TTTACCTTATCAGCCATAACTATTGGAACTTCAGAGTGAACACAAGACT--TAAAGTCTCCCAACAATTGAAAACATTGCC--------------ATAGTAGTTTAATAAATAATAAATGTATCAAAAACCATCCA----------CTTCCTGCTCTCACAGTGGCCTTCCTACTTAACAGACTGAGAGCCGCATTACATAGGTCACTTCCTCTAGGCT-----CCCCTGCTCTCCCGCCTCCCCATTCCCCATCACTCTGCTCTATTAT-TACTATTTGGCCCTTAATTAATGGTCACCATAATG-TCACCTACTGCTTATAGG-TATAACACAGAAGAGGTGGGAACAAACACTCATTCAGGCTTACCATACAGCTGTTATGCT--GCAAGGAATTTAAAATTGTTTTATGGAATGCCTAAAAATGTAGGCACCATTAAGTGAAGGAAATTGAAGATTTACAAGGTAATTTTCTTAAGTTTTCCCCTGGGGTAGTAAAAGAATTGCTATTAGTAAAACAATTGATTGGGAGCATTAGCATGGATTAGGTAATAAAGAAGCTCAAGGAAGTAAAAGGTCCTGCGTTCTAAGATCTCAGGGTAAATTAGGAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTACAAAAGGAGAAGAAAATACAGAAAATACACCAGCCGTCATGGAAAGCATGAGAGGA
s HiC_scaffold_1 134895606 674 + 233722169 TCCATTTCATAGAACAGGATTATTAAAACTTCATTA-GGATAAAAGAATAGTAAAAGATCTCTTCAATGGAAAACAACATTTATATATAGCAAATACAGTGGTTTCGATAATAA-AGAGGTCTCAACACACTTGAAAGAATTATATCTTCTTCCTATCATTTATTTCTTCCTACTTACTAGGGT-AGAAACTCATGATAGAAGCTACTTTCCTTAGACTGTTGGCTTCAGATCTATCTCCTTTTGACTCAGTGTC--TCTGCTCTCTCACATGCTAATTAGTCCTAAAGTGATAGTTATTACATTTCTTAACAACTATTTATTGAATGTAATATAGGAGAGATGGAAACAAACACTTA----GACATAT-ATGTATCTGATAGGATTGGCAggccatttaaaattattttataaaaaactgGAGAAGG-AGGCATCATTAAGTGGAAGAAATTGAGGATTTAAAGG--AATTTTCTTAAGTTTTCCCTAGGGGTAGTAGAAAAATTGCTATTAGTAAAACAATTGATTGAG-GCATTAGCATTGATTAGGTAATAAAGAGGCACAAAGAAGCGAAAGCCTCTGTTTTCTAAGAGCTT-TAGTATACTGGGAGAACTATGATACTGGGAAAAAATGTATT----------------------GATGAAGAAAA-GCAGGATATACACCATCAACAATGCAGAAAGTGAGAGGA

a score=71703
s chr3           148226887 2895 + 160039680 ACTCTCTAAGTAACC-CTGTTCTCTAGCTGTAATTTGTTTTCTGCTTCACCTCAAATTACATTCAATAAATAAAAAAACATTTTA--ACTTGTATCTTTTCTAGCCAAGAAAGAGCTTCTTTGTGATATTTGACAAAGGGAAGAAA--AGTGTTCAACAACAATGATCA--CTACCAG-------GACCAACACTATATTTCCTCCTAGGGGAATTCCAGCACACCCACTTCC-----CAGAAACTATCACCTTGGCAGTAATTTTATTTTAGCACAAATACGCTTC----CTCCTT------------------------------------------GTGTTTTCTTTAGCTCCAAAG------------------------------GGTATTCATTTCAG-CAGCAT--CTCTGACCCAATCCATAACATGAAAAGCACACACACAGTCCATATGGCAAAGGAGGAACTA-----------------------TGTAAAGGTGCTAACTTAAATCAGACAGAAACTACCCAATGAGTTTATGGCCTATTTTAAGAAATTGGGTTTTTGTTTTGTTTTGATTCTTTAGACTCTTCTTGTTGTTGTTGTTTTCAAACAGCCTCATGCAGGGGTAGAGAGCCATTTTTTTGCAAGGCAATAAATCCTGA-AGGGCCTGTGATATTAGCGTGGCAAGCAATGGTGAAAGTATTTGAACTAAAATGTTTTAGTAAAGCTATGGTGGGCCAACTTTGACACACTCAGTTCTGTTTTAAAGAATTAAGATGAAAGATTATGAGTGCTCGGGTGAAGCTACACATCTTATCATTATTAATAGAAGCGTGGGATAAGACCCTGGCAGACTTTGT--TGTGCTACAGACAACAGTTTCCTCGCAGAGTATGTCATTGTCTTTTCAGTGTTGTTT---------CATGTGCATCC--GGAAAAGGGAGCACTGAGCGATGATGATGCTCCCTGCTGTCAGAGCACACAAGGAAGACAAGTGTTCTCCTGTAGTAATGGGAGCTGGGTGCTGAGAGTGTATGGAGGCGTATCTGGAGATTAAACAAATAGATAATATTTTCCATCTTATTTCCTTCAACATCAGACCAGAACCCAGAAAATTGAA--CTTTAAAGAATTAATGATATGGTTATAGGATTAACAGCATTACCTGTCGATGAACT---GCCTACAAAGC----CCCAATTGCTCTTGGGATATCCTGATGTCAAAGATTGAGCTTCTTCAAAAATCTGCTCACTGTGGAGCCTGAAACAGCTGGCCTTGCCATCCATCTGATGACTCTGAGTACGTGTGATGAAGGGGCTGAGAAATTGCTCTGATGTATCATAGTGCCTGCATCTAAAGCAAATTTGTCTCCAGCCTCCCAGGCTCACTGAATATTAAGATAAGGC-ATGGGGGCTGGCACATATTCCCTTCAGTTTCAGTCTGAGACATGTGGAAGTGATTCTAGCCT-AGACGATCACATTCCTCCTAAAAAATGTTGGCAAGTCCTCAGAAACTGCGGCCAGTTATGATTAGCACTCTTCTGAACATCATTT---GGGAAAAAATAAAGTCTGATAGAAGAGAAAGAAAATTCTGGCACCTTTATGAATCCAAAAAAAAAATGTTTTATGAAGAATAAATCCCTGCAAACGTGGTACA-GAAAAAAAATCAATAGAACTTGCTGACTGCCTTTCGGAGTGCAGGAAGGAGGCTGGTGTAAAGTTAATTACTGCCTTATTAGGCTGAGCTTTGGACCTGGGAACCCCAAGAAGCCAGGTTAAATGC------------------------------------------------------------------------------------------------------------------------------AAAGAAATCATTTCA--GCTGCCTTCCCCGTGGCAGGAAATGTTAGAATTTGCATGCACGGTATTAACGGAAAGACACAAGGTTCTGACTTCTAAATGCCAACATCATGATGAACAGACTCCTATCCACTGATACCC-AGAATCTGTTTTCTGTGTGCTCCGGGGTACTGAGTAGGAATGAAAGTCTCTCCTAGAAAATCAAACATAATAATCAAATTATTCGA-GCTaaaaaaataaacaaaacaaacaaacaaacaaaACCCATCAAGTGTGAAGTTTTAATGCTTACTGGTGACCAGTGACCAGAGAGTAAGCTCACTGA-------------GGAGCAATGTTCTC---CAAAAGCTTTACTTTAGGCATGATTCAAAAAACCAGTTTGAGGCATATATAACTTCTATGTATAAATGCAATGGAAATTCATGAGCTATCCATAGTA-------TTGAAAACCCAGCCACAATAAGATTATGAAAAATTTAGGCAAGCTTATGCAGTACAGGTTTTCTTACTTGTAAACTAAAGATAAATTACTTATAAATGATTATATGAA-AGAAGAAAATAAATTATTTT-------------------ACTGTTGatatacatatatatgtgtatatatatgtatacgtgcgcacgcacacacacacacacacacacacacacacacacacatatatatatatatatatataCTGGACCAGAGAGGCAATACCTATA---AAATATCTAC----------TCTATA----------------TACTAAAT-ATTTATAAAGTTATAAAATACATGTTTTCTCTTA--------------GTCTG--------GGTCCTAGGTTGGTTTTTAAA--------TTGTTTTTCCAGCCTTAGAAGATTTCTGTGTCTAAA-GCTAGATGGAGTGCGTGAGTCACCTGGTGATACAGCACCAGCAACATCATTCCTGTAAATATGGCATCCTGTGG--ATCTGCAGTGGATGCCAGATAC--TATGAAATGGAAGGATGCTCTTGCAG--CTCTGCTCCTCGTGTGGCTGTGTGAAGAAAGGATT--TTCTCTCTGGGAGAATACTTCAAGCATTGCTTGCCTGACCCTT-AGTACATTAAGGACAGCAGGTAAATCACTGGCGTCTGCCAGAGAGGCACATTGATTTAGGGACACAAAGAAAATGCTCACTAAACAACGTGCTATCCAGCTGGAGAATCATAAACACACCCATCGCCAAGCAAATGGATCT-AATGCTTAATTAACTTTCACTCACCTTCCAAACGATGAGGACAAACTGAAAATACAATCAAATCTATTTAGCCTCAATCTAGAGCCAG
s HiC_scaffold_1 134903504 3082 + 233722169 ACTGCCTAAGTCACTGTTCTCCTCTCACTGGCTTTAGTGTCCTGCTTTATCAAACATAACATTCAAAACATGTATAA---TTTCATCACTTGCACCTCTTCAGGT----GAAGAGTTTTTCAAACAACAGTAACTCAGGGCACAAAGGAGTGGACAATATGAGCAGACAGACTACAAATTTTCCCGGTTGACCATATACACTGTCCTAAATCCACTATAATTTACTC--TTCCTCAGCCAGAACATATCACTTTGGGAATAATTCCAATTTAGAAGAAatgagtttcttttctcctttaggCTTAAAAAACACACAGCTCATGATCAGATGAACTAGAAATGTTGGCTTTGACTTCAGTGATGTTCAATTTATTTGAAATAGCTTTTACAGATACTTATTCCAAATGGCACTACTTTGACCAAGTCTGCAACagtagaaatatatatttattccaTAAGTCAAAGTAGGAATTAGGCAAGTTGGATTCTAGTAATTATGTAAAGGCACTAACttaaatcagaaagaaac-aaacaattggTTTACAAcctcttctgaaaaat---------------------------aaattctttttat-----------------agctTAATGAATAGAGAGAGG---AGCTTTTCACAAAGTAGCAAGCTTTGGCAGTGAGTGTAATATTACCATGACAGTGAATAGCAAAAA-ATATAAGATGGTGTATTTTGGTAAAGCTA--ATTTGTCAACTTTGAAATACTCTGAT---Ttttcaagaaatcaga-aaaagataATGAATGCTCAGTTAGAATCACGAATCTTATCACTGTTAATAGACTAGCAGAATATGCCCTTGATAAAATTTATCATGTACTATAGAAAAT--TTACTTTGTAAGTTACGTACTT--TTGTTCAATATTGCTTACTCTTTCTTATGTGCATCCTCAGAAGAgataaaatcaaatgataacTATACTCTATGCTGTCAGAATAT--------GGCAAGTATACTGTTAGAGCA-------------GCTATGTATATATGAGAATTCCTctgtatattaaataaata-ataatgttt---gatttatttccaaaAAGATTAGAACAATaaactgcaaattaaaatttttaaagaattaatgatatagtcaaagaaacaaaaatattatctGCCAACAAACTCAGGTCTTGAAAACAACCTCAAATCATAATTTGGTTGTCTTAATGTCAAAGCCAGAGTTTTCTTTGAG-TCAGCTCAGAATATAGCATAAAACAGCTGTTCTGGCGATCAGTGTAATACCTCTGAGTGCGTGTGATGAAGGGGCTGAGAAATTGCTGTGATGTATGATAGTGCCTGCATCtaaagaaaatttgtctgcagCCTCCCGGGCTCACTGAATATTAAGATAAGGCAACTGGGATTGGCATTTACTCCCTTCAGTCCAGAGCTAAGACATGTGGAACTGATTGTAGCCCGAGACTATCACATTCCTCTGAAAATATGTTGGCAAGTCCTCAGAAACTGAGACcagttattattatcattttcctGAACattatttgaggagaaaaaataaGGTCTGATAGA----AAAGAGAATTCTGGGATCTTtgtgaattggaaaaaaaaaaaaacattgaa-aattaagCTTTGGAAAactgatacatgaaaaaatatcatTTGGACT-----ACTACCATTTGGACTATGAAAAAGTCATTGATCTGCAGTTAATTACTGTCCTTTTAGATAAAACTTTGGGTCT-GGAACCCTAAGAAGATgggttaggggctggggttttagctcagcggcataagtgcctgccttgcaagcaggcagtcatgagtttgatccccggtaccgatacaaaggaaaaagacaaaaaaaaaaaaaaaaaaaaaaagatgggttaaatttaaaagaaatcctgtcatttctcttttcttcatggCAGGAAGTAGGGCAATTTACATTTACAGTATTAAAGAAAAGATTC-AGGCTCTGACTTCTAAAGGGCAATA---------------TCCTATTCACT-ATACCTGAGAATCTATTCTCCA-ACGCTTTGGGGTTCTGCATAGAAATGGAaatc---ctttgaaaataaaatgtgacaaCCAAATTTTTTGATGCTGAAAAAAT-----------------------------TCAAGTGTGAATTTTTAAGACACAGCCGTGAT---TGACACTTGAGaatgtttattgatttaaaaaaatttaaaacaatactatAAAGTAAACATTTTACTTTGGCCTTGACTCAAAGGGTCATTTAGTCAGAAATATAATTGCTGTGCAT-AATGTAATGGAAATAAGTGTAGTATCCATGGTCCTCAGGTTTAAAGTACCAGTTCCAACCATTTTATGAAAAAGTCATTGAATCTTATGATCCATGAGTTCTCTTAACTG-----TAAAAATAA--TACttataa-----taaatgaataagaaaaaataaaatactacatatagcaaacctaacaaaatagcTAATAAAATCTTTCTCGTat-taaatatgta-----------gaaaatagaaactaaagTTTTCTTATA-------ATCTGCCTCTAATTAGGTCTAAAGCTGgcttgaaaggaaaaatttatatcTAATTAACTATGGGTAACTCATCTGTACCTAGTCCAGAAGCATTGCCAAATGAGTGAATaagttattaa-------ttttcttttaagtggTGAATTTTGATctgatttcactgttttaaaatcaatttttaaaaattgcctttatTTTTCCTGCATTAGGAGATATTTCCTGCTAAATTCTAGATGGAGTTCATAAATCACCTGGTACTG------TAGCTGCATCCTTCCTGTAAATATGGCGTCCTGTGGCTACTTAGGGTGAGTGCCAGATGCTGTATGAAATAGAGGTATGCTCTTACAAACTCCTCCGCCTAATGTGACATCCTGTAGAAAGGATCAGCTTTCTTCAGGAGCATACTTCATGCAATGCTTATGTGACCTTTCAGTGCATTAACGACAGCAGGTAAATCATTGGGTTCTCTCTAACAG--ACATTGATTTAGAGATGCAAGGAAAGTACTAACTAAACAATATGCTATCCAGTTGGAGCATAATAAACACACCTATAGCCCAGCAAATGGATCTAAATGCTTAATTAACTTTTGCTCACCTTCCAAACAATGAGGAC--ACTGAAAGTACAATCAAATCTGCTCAGCCTGAATCTAGAGCCAG

a score=105344
s chr3           148232429 5775 + 160039680 [encoded data, 6202 characters]
s HiC_scaffold_1 134907350 5435 + 233722169 [encoded data, 6202 characters]

a score=45616
s chr3           148251311 2591 + 160039680 AGAGGTAT-CTGAAAACACCCTGCTTGAGCTCATTAGAAAAAGTGTGTAGCACTGAAATGCTCACAAAGCAGACAGCAGTGAGCCTCAAGGTGTCAAATCTACCCATGTCAGGGAGAAGCAGGAACATCTTCATAAGGttaattcagggtctcggtatctctgtcaaaaaagcatcatgtgagcatttggcatctttaggactttaagaattgctgaatagctcagaaatctaacatcattacaggggcctccctggcatgtgtgcaggtgtccagtgctgaatgttaagcaagctgagaatttctaatcttgatttaaatgcacaaggtagttagtctactgggtactgtgttttcttgaaagcttaaTTTCCCTCTCTCCATTTATTAATGTAACTGTTGGTTGTTTAGAATATTTAATTAATGAGTTTTATTTTTAACAATCTGCTAGTGCCCTGGGGCTTTTAAAACAAAAGACATATTTTTTTTTAAATCCAAACAAAGATTAATTAATTAAAATAGTTCTTGCAAATTATTGTCCCAATACTCATTTGGGAATATTTTAACAG--GGAAAGAAGTAGGCAATAAAACCGTTCT--------TCATATGACTGTGAGACTCCTCCGAGTCTCTCTGTGCCTTGCCTAAGGCACACTCTCATTGACCAACTTACCAATAC-TTTTTCTGATGAAAACTGTTGCAGCTATTCA------------------------GAAGGACAGAAAATAATGGAGAAGATGGGAA--------GAAAGAAGAGACAG-----AAATTGAAAATTATCCAAAGAGAAAATAGT-TACATTCTTACTGACCAAATCTAGttttttttttttttttttttttGAGGAATTTATTTTTGCTTTCAGTTAGTTCAAGA--------AGCAAGGCAATGCACAGGTATGAGAAGAAT------------------------------------------------------------------------TTCTTAAATGTA-ATAAATTTGAA---GAAACTCTACTTTTA---CTAACCCAGTTCCTCTTTAGTCTTCCTCCCTTCTGTGTGAGTGAAAAACTCTCCCTTCAGACTCTGTTACCTTCTG---CCTCAG----------ACGGTAA-------------------AAAGATTGTGTATAAAAAGATTTGACATCCTGTTTTGTAGCTGAGAACAACAGAGGAAAATGA-ACTCAGTTTTTATCAGCTTATTTAGAGCTTCTTCCTGTTTGATCAGAACTTGGTCCTTGGCAGTGAACAGAGACCCCAATGCCCTTGAACCTGAGTCCTGCATGCCACTCACTATCACTCTTACTGCGAAGGGACTATATGAATAGGATTCATA----TTAAAATACATAGTGTCCTTTAATCTTGTTGTAATGACACATTG--------------GGGAAGTGTTGTGACCTTAATCAATTTGTTTTATTGTGGAGCTTAAGGCATAGGAATAATTCAATGTAT---AAGCTGACTAGTCCTTATAAGGTTCTTGCTTTCTTCTAGTGTCAGTTTCGCCAATTAGAGTGGTCAAGAAAATGGTC----AACCTGCCTTGTCAAATGAATCCCCCTAAGATCACTTACAGTTCTTCGTCTCCTTTGAAAACTCTAACATGACCAACTTTGCCCTC-TGTCCCCTACCCTTTAACTTACCTTGTACAATTT--------------ACTTCTTCCAATTAGCACATCCTACATTCT--------GTGTCTTGTTCTCCACTTTGTGAAGTCCCTCCTTCTGCCTGCTTGGGGCATCCATTGTATTGTATTCTAAACTTTTAAAGAGAGATGCTCGGCT----------TACTGATTGTTAGACT--CTTCTTTTCT-ATAAACATTTTAGACTAGACATTTT----GAGTCAATTATGGCATTTGCTTTATCTGACGTGTTGGA-TGAGATATTTCTTATGACCCTCTAAGTCTGTTCCTTATGAGCGAGGTCTCGTGGTTCTAGTTTGGTCAAGTCTTTCTACTTGTCTCCACCTCCTAGTGAGTATTCAAATGACTTTTATTGTGGCAACTAATATGTCCTGTTTAACTCT-CTTCCTTGATTTTTCTCTTCTCTGAAAGTCACAATCACTTTTTCTATTCCCATCTCACTCTAAAG--TTTGAGATTAATTGTTAGTTTACCTGGATTGTATCTTTCCCTCTCTAGTG----GATTGACTTTCTGCACAGTACTGATAGTACCTAAAATA--CGGTGTTCATTTTTAAGTTTTCATAA-------------------GCTACTTCAAGCAATATAATCTGAATACTTCACAAAT---GAATGAGATACTAGCATATACACCCAT----TTCTATGCAATGTGA---AAAAAAAGGAGGTACTGAAACATAGTACTTTACTGGCTAAGCACAA------------------CCTTGCAC-------CGAGAATTTGGGCAACGCTCCTGCTCCCAGGAAACACTTTATCCTGTGAAGTTAGGGTGGATCAAAGGGAAGGATTCACCAGGGCTTAGCTGCAAACTGGAATGACCAGGAAGGAAAAGTGTGTTTTCCTTCTCATTACCTCAACACCACCTCTATCTATTCAGTGGCCAGCCAAACCCAGACATTATTAAATCCCAGAGCTGGACTCCATAGAGAATTCCAAATGGAAAAGACCTTGCCTGCCAGCTCTTCCGCAGACACATATGTCATATTTGTTAAATGGCTAAGGGTTTTTGCAGTGCCTGGTCAGGAGTGAGTGTGAGAGGCAGCTG----------AATGCTGTGAGATGTGTTAAGATGGAGCCACTAGCATATAAAA
s HiC_scaffold_1 134919762 2746 + 233722169 AGATGTATTCTGAAAACAGCCTGCTTCAGCCTGTTAGAAAAAAGTTG-AGAGCCGAAATGCTCACAAAGCAGGTAATGGTAAGCTACAAGTTGTCAAATTTATCCCTGTCACTAAGAAACAGGAATATCTTTATAAGGTTAATTCAAGGTCTCTATAACTCTGTCAAAAGAGTGGCACATGAGCTTTTGGCATTTGTAGGACTTTAAAAATTGCTGAATAGCTCAGAAATCTAAAATCATTGCATAGACTTTTCTGGCACACTCACAGGTGTCCAGTATTGAATTTTAAGCAAGTTGACAATTTCTGATCTTGCTCTAAATGCACAAGATCATTTGTCTACTGGGTATGATGTTTTCCTGAAAGTttaatttcccttcttccttttactAATGTTACTGTTGGTTGTTTAGAATATTTAATTAATGACTT---TTTTCCCCAATCTGCTCAT---CTGGGGCTTTCAAAACAAacgacata--atttttaaaaacctaacaaaaagtaattaattaaaatagttGTCACAAGTTATTATCCTAATTCTCAACTGGGAATATTTTAACAGACAAAAATAAGTGGGCAATGAAATAGCTTCCTGGATTGTTCTATGACTACGACACTTCTCACAGTCCCTCCAGCCCTTCCCTGAGATACACTATAAAAACATGACTTACTTACACGTGTTTTTCATGAAAATTATGTCAATCACTTAGAGTAAGAAacaaagggaggaagggagggagggagcacagaagagaggaagggaagaacaaaggaaaaaagggagagaggaaaaatttGAAATGCCACATAATGAAACCTGCATATATTCTTTTTGACCAAAGGGCGTTTTACTTTGACAATTT------GGGCTATTATTTTTCAATCAGGGAAactcaaaaacagaaagaggaaatgaATGCACAGATATGGAGATAacatagtctctctctctctgtgtctgtctgtctctctctctctctctctctctcactctctatctctatctctgtctctatctgtatctgtatctgtatctgtatctctatctctatctctatctctatctctatc---tctacctCTCCCTCGCCC------AGAGCCCTCTTT-----CTCTATAAGTTTTGGGCATCTCAGTGAAAGGATAACagtgacaatatgcaatatttacTTGAAGACTGCATATTGAATG--TTACCATTCCATTTTTTAAGTGAAGAAActagaggaaactgaggctca----ctaAAATATTATCTCAGACTCCT--------------AACTTGGTTTTCTATTGTATACCCTAGACAAACTGCCTTAGGGTCGCAGTAAGTTGTTCTTCACATTTTCGTTCTTATAGTTAAGGGACCAGTTTGA-AGACTTTATATTTTTTGACGCACATTTCTTTCTCTATGTTTATTCCAAGACCAAACTACCTTAATTTCTACTGTAGGATTCCATGTCTCGTATAGATTTGGTTTATTTTGGTAGTCAGAGTTTGACAGGTTTTCTATTTATGTAAAGGTTATTGGTTCCT-CAAGGTTTTCTATATCTTCTTGGATCTATTTAGTATTATATGACATctcagaaatttttcatttaatctgACTTGtcaaatgaataga---aaaattgCTCATCATAATTC-TGCCTTTTAAAGATTccta-atgtttactttttttgtcttgATTTCAGTCTTTTAATCAGTATTACAAAAATTTGTAGGTTTTTAAAGCTTATTCCAAGAACCACATTTTGTACCCTCACCAATggatatttgttttctatttttta-----tttctttcta-----------------------tgtaTTCTGGatttct---------tgctcttcttttctttcagttctgaTTTTTA-ACTAACTTCTTTCCTAATAAGCTTCTTAAActgttaactttaaaaaaataaactatgacATAAGTTGTATCTGCTATATGGAAGTGTCATATTTCTTAGTATAC---ACATCTATGTTTTAAcaa-------ttgtgtttccttttttatctaaTGTAAC-----ATCGCAATTTCCGGTTGAGAACTTaggttattttaatt--------tcatattttgtgtTTAAAACTGCCatcttgattttcct-ttttcttccttttccaacCATTCTTtatctcctcctcctgccctggtGTCTTTTGAATTAATTGGGAATTGTTCAGGATTTCAGCTTGTCTCCtctaatattttaattaacattatTTACAGTGTTAAAACTAACCCAaacaattaaatttcatttttattttagcacaaTCTACATGCAATTATTTGTGCCACTTCAAGGGA---AGTGTGAGCTTTCAACATATGTAGAACTATATGCTGAAAGCCTCACCCTTCAGCCTATATTCAgcctgattttatatatatatatgcttaagGATAAAAGTTTACCAGCTAGAAACAATAATGGTTTATTGTTTCTCCTCATTCTGTTGGTCAGGAATTTGGGCAGTGTTC-----AACGGGTACAACT---CCCTGTGATGTTAGTTTGGGTCAAATACTTGTATTCTGTTGAATCGGGCTGC-AACTGGAGTGCCTAAG-----AAAGCCTCTCATCTTTGGGGTTGTATCAACATCACTTCTAATTATTCAGTAACAAG-------TAGATTTCATTACAACATGGAGCTGAATGACATGGAG-ATTCCTGGTGTATCAGCCCTTATGTGCTAGCTCTT-------AACAAATGTTGTATTTGTTAACTGGTCACAGAGTGTCACTTGACTGTGCCAGTAAGGAAAGTAGCAAACAGCTGCATAACGGTTAATACTGTAAGA--TGGTAAATTGGAG--GACATCatataaaa

a score=26271
s chr3           148263950 1038 + 160039680 AAAGCTTTAAGCAATAACACTTGTCTGCCAACATAGATACAATAATTATTTTGGATAGGTTCTGTCTCACCACTGAACT-------GGATGTTCTAAATTTAGATTTTTA--GTCTCAT-----GTGTAAGCCATAGCTGTTACTATAAAACCAGCCACTGAAATT-TTTGATTTTCCATGACAACTTAGGAGAAAAAAAGACGTATGCTTTCATTTATTGTTTCATTTT--TGTTATATTTAATTATTAAGATGCATTTGTTAGATCAGATGTAATGAGGAGGAGGAA--GACGTTCTGGAGAACAAGCTAAGTTTTCACTACTTTCCTTAGA--CAAAATTGAC--AGTTCAAGAAGGAAGGCAGATCTCATTCACATAGCCCATTGTTGATTT----TTCTCTTGTTTTCTGCAAGTCTTTGTGAAGGACTTATTTCAAA-GTTAAGGGTATATAGGAATGCCTAAAACTCCAAGATAACCACCTTTCATGTTTCCCAACATCGTATCA------------ACTCTGAATACAGATGCTGTAGACAGGCAGAGGAGATT-GCAGGTGATCTGGTCTTCTGGTGTTTTTGTTTGTATGATGCCTATTGTGTGAATAATAAGATGATAGGGATAGTATCCAATACATTGTCACTTTGGGTAGAGATTCTGTTGAAGGTCCAGACTTAATTACAGGCACTGTTTCTATTCATAATTGACAATCAGTAGAACCATGGTTACTATGGCAACAGACCATG---GTAAGATATGGGAAATAGTGAGCAAATATTCTAAATG--------AAATAATATTAAAAATAGAAAGTTTAGAAGAAAACA---TTGATAAACCATATAATTGATCATATTTTTT-AACACTGAAGAATTTAGAGATTAGATTTTTATCTCAAGG-CTATGGATCATTTTTTAAATATAAATTAG--------TAGTGGACATGACAATGAGGACT--AAGATATAAACTTATTGCTTAATTTTT--AACTATCATGCA-TGAGACCAAAAGTTAAAACAAATATATACATAAAATGT----AAGTTTTCTAATAGTACCTAAAT-----AAAGAAAACTAATTTAGATATAGTTGC
s HiC_scaffold_1 134930681 1076 + 233722169 aaaactaaaaaaagcaaCTCTTGTCTGGGTACATAGATATGGAAATTATGTTGGACAGGCGCTGTCTCATCACTGAGCTCCAGTGTGAATGTTCTAAATTTGGATTTTCACTGTCTTGTCATTGGTCTAAGTAATCCCTGTTACTTTAAACCCAACCACTGAAAATAGCTGATTGCTTATGACAACTCA------AAAAAACAGTAC-TTTTCATTTGCTGTTTATTCTTGCTACTACATTTAATTAATGGAATCTATTTAGTAAACGAGATgacaagataaaaaggaaaagaagttattGAGAGT--GTCAATGTTCCA--ACTTTCCTGGGAGGCTAAATTGACCCACTTACAGAATCAAGATAGATCTAATTCATATA---CAGTGTTCAGttctatttcactttttgtttgcAAGGCATCatgaaggaattttttaaaaagttgaattcTTATAGGAATGTCTAAAATTCTAAGATG-TTGCCTTTCACATTACATGACA-CATATTACTTGGAATCTGCACTCTGAATACAAATGTTGTAGGCAAACTGAATGTATTTGCAGATAATTTTGAGTTCTGTTGCTTTTGTTTATATGCCTTCTATAATTTAGCTAATAAGGGAATAGGGGCAATAGCCAATATAATGTCTCTTTGAATAGAGACTTCCTTGAA-GTCTAGATTTAAATGCATGCACAGATCCTGGTT-TAATTGATGATGTGTAGATTTATAGTTGCCATAGCAGCAGCCTAGATATACatgatattagaaa-aataa--aaataaactaaacagGAGTAATAATTAACATGGAAAATAGACTTTTTGGTAGAAAGGATATTTGATAAATCccataa-----cacattttttaaacttcaagGAATACAGAGATTTTATCTTAATTTCAAAATCCATGAATGATTTTT--AAT---AATTAGCCGAAGGCTAGCGGAGATCA--------ACTGCAAGACAGAAATgcacaaaatacattttgaaacttCCTTGAactgaaagcagaaattaaacaaagtaaataaaacagaGGCTAAATAGTTTTCTAACAACATctgagttttaaaagaaaaact--tcaaaatacatttgc

a score=53674
s chr3           148270344 1442 + 160039680 TATTGTTAGGTATGTATGGTTGGGCAGATTCTTTCGGTATAACTGATAGAAGACAGTCTTGATATGATTAGAATATCTG-ATTCATCAGAGGATTATATCAGGGC-TGTGATATCATAAA-ACGACATT----AGTTCTCTTTTACAAATGTGCCTTGTAAGTGTCTTTGTGGTCTCAAGGCAAGGTGAGCTATCCTCCTCTGTGTGTTTATAAAGTTGGAGAGCTTAAG--TATTCTGTGTGGCTTTTGGTTTGTTTGTTGTTCTCAGTGAGACTGGGGTG----TTTTCAACATGTGAAGTAATTCA----------GAGCATGTACTGACTGCCACCCCA-------------------------CAGCTTTCTG--CTGTCATTGTTACCAGCACTTGCTTATAACCTGATTCGGGGGTAATTAAGGACTGAAAAGGTAATCAGGATTCAAGTGTCTTGAAGCTTACAATTGGGATTTGTGCTTCAAAGCCTTAGATACTTAGAAAGAAAGCCCCTCTGTATGCCTTAAAATGGTCCAAAAGTCTAATCACCAACTTGAGAGAGTAGATACTGCTGCTAGTCAGAGTGTGGCAGATACAGAGAGAACCC-AGAAAGACCCCTCTCGT---CTCTAAGTAAATAAATCTACTTTCATTGTTTACATTAATGGGCTCTGGAATCTACCCAAATGTGATTGAAATCAAAGTATCCTTTACACATCCCAAATATACTGCATTCATCTTTATCCCTGGGCACCAGTAGCCGGTTTATGCAGTGTTTTAATTGTTTATTTTATTAAACCACATAGAACAGGCTATACTGCCTTTTCATTATTATAAACTAAAGTTATGGTGACTCAGGAATATTTCATAGAGGGAAATGAGATGTAATGAGACCTCTCTTCCAAATTCAATGTTTTTGGTAAAAGTGGCCTGAAACATTTCATTTACCAACTGAAAATATACAAAGTTTCTATTAAAATTATACTTGTTGATAGGTTAATTACT-AACGATCAGTATCAATAAGTC-TTAGGCAATTTT----------------GTCCCTTGGGCATTCTCTTAAGATGGATGGAAGAA-AATTAGCCCATTCAGTGGTGACTTGGTTAATAACCAGTTTGTTCAACTTTCCTTTGCTTTCTGTCCCTGTCGGCGTAGTGGATGTCTAAACAACGGTATTTGGTCAAGCCCTGATAGATCAATAACGGAAAGCCGTTAACGTGGGCGTACAGAAACAGTATTTGGTCAGCCCCTGATAGATCACTAGCAGAATGCAGTTAGTCACACTTACTTAGTGCAGTTGATATTAAGAGCTGGTAAGGG-TTCCTCACGCTTACTTCTCGACTCCCACATCAGCTGTAACAGAGCATTCTCATTTTCCACATGAAAGCCACGGGGTCCGTTTCAGAGCACAGACCCAACAGACTCAACACCAAAAGATTAAGTGCCTAAGCTGCCTGACATTGCT-TGTTTAGCTTTGCCCACAGG-ATTTGAAT
s HiC_scaffold_1 134940867 1429 + 233722169 TGTCATTAAGAAAACAGGCTTTGGTAAATTTGTTTAGTATGATTAACAGAAACAACT----ATGTAATTGGAATATCTATGTTCTTCAAGGGATTGTACAAAAATATAGGCTACCATAAGCACAGCCTTTCAAAGATCTGTTTCACAAATGTGCATTATGAGTAAATTTAACGTCCTCTGGTCAGAAGACTTTGCTTTTGCTAAATGTGCCCGAGGTTGGGGAGAT-AAgcctattttgtttggtttttgttttgcttgttacTTT----------GGGGTGAGTTTTTCTGACACGTACAATAATTGATGTTTACCATGACCACA-GCTGAAAGTCAGCTCATTCTTCAGGCAGGAAATAACGTACGCTGCTTTCTGGTTTGCTGTTGTTAACAGTGCTTGTCTATAACCTGATTCCTGGGTAATTAGGGACTGAAAAGGTAATCAGGATTCAAGTGTGCTGGAGCTCACAATGGGGATTTGTGTTTAAAAGGCTTAAAAACTTAGCAAAAAAGCCCCTCTGCACCCTTTAAAATGGTCCAAAAGTCTAATGACCAACAGGAGAGAATGAATTCTGCTGCTCCTCAGAGTGCAGCAGTCACAGAGAAGACCCTAAGAcaactcctctcctctcctctaagTAAATAGAGCTCCTTTCACTGTCAGATTTAATGGAGTCTGGAATCCACCCAAACGTGACTGAAATCAATGTGTCATTTTCACATCCTAAACATACTGTGTTAAACTTCATCCCTCCATACCAG----CTGTTTATGTAATG-GTTaagagtttatttcattttactgggTAAAACAGGCTATGCTTCTTTTCTGTCATTA-AAACTAGAGTTAAAGTAACTACGGAATATTTCAAAgaggagaataaaatgaaataaaacatctcCTTCAAATCTGGGGTTTCAGTTCCAACAGTCttatcatatttcattttttaggcaGAGTTACACAAAAATTATAGGGAAAACATATTTATTGATAAGGCACTGATGAAATGATTAGGATTGAGACATCTTTAGTCAATTTTGCAGCCATTATAAGTAGCCTCTTGGACATTCCTCTAAGACAGCTAGAAGAGTAGTCAGTTCATTCATTAGTAACCCAGTTAACCACTGGCTCATTTAACTTTCTTATACTTTTTGTCCTTGTCTTCAAAATGGAC--------------------------------------------AAAAGC-------------------AAACAGTATTTGGTCAAGCCCTGATAAATCAATAACTTAATGCAGTTAGTCACACTTACTTAGTGCAGTTAATATTAAGAGCTTGTAAGAGTTTCCttgtatttacttctttattcccACATCGGCCGTTACAGAACATTCTCA--TTCCACATGGGAGCCACAGGAGCCATTTCACAGCACAGGCCCAGCAGACAGAGCA-CAAAAGATTAAGTG-CTAAGCTGCCTAGCATTGCTATGTTTAGCTTTGCCCACAGGAATTTGAAT

a score=3339
s chr3           148271461 47 + 160039680 AACGGTATTTGGTCAAGCCCTGATAGATCAATAACGGAAAGCCGTTA
s HiC_scaffold_1 134942034 47 + 233722169 AACAGTATTTGGTCAAGCCCTGATAAATCAATAACTTAATGCAGTTA

a score=86789
s chr3           148275490 5730 + 160039680 [encoded data, 6075 characters]
s HiC_scaffold_1 134943543 5015 + 233722169 [encoded data, 6075 characters]

a score=50880
s chr3           148288177 1628 + 160039680 tccctgtcttttctgtttaatcttttgtaaagtgttagg-aagagcagcatcttcttcatggggattttatttggattaaatgaaataagac--------tttgataaatgctcaaat-tagtCAAAATTTGTGTTTTACCAAT--AGAGTGATAAAATCAAACAAGTGTCTCATGTGGATTTTTATGGAATAATTGCAGATTTA----ACATTTGACATTAATTGTGCACACAGACACTCTCTTTTA-AAGTGTGAGTCCTCACGCACAC--AGATCATGGCATAGAATCCA-TGCCCAGCCCCTCAGTTGTTTTATCTCTTCCTTGGGCTTTCCTGCACA-CCCATCTTTTATCTAATCTCTTTCAACTTTTGAACTGTACTGCTTGATCTCTCAATTCTTGATCTGTACAGAAGAATATATTTTTAATAATTCACCCCAAGTATCAGACCCTGCCTATCACACAACCTTTTTCTGATGCCACCAACATAAAGCTTCTGGGTTTCGTTTTATCATAAATATTTCAATAAATCCATAGGTACCTTTGGAGAATTATTTTTT-TGAAAAGAACATCCTTAGATGTGTTTTTAAAAACTCCTTTAGTATTTTCAAAATTTAATAATTGGAACAAAGGGGACT-TTTAATTTGTAGATTGTGAAATTGTATCTTACACACA---TATGTTTTTTTGGATTTTGCTTA---ACATAATAATTTTACAAAGCAGGCAGATAATTTTTGAAACTTTATCTTTTAA----AAAGAGAAATCCACAAGGTATGAAGAAAAAATGACCTCAGCTAACTTGTCTTTTGCAGGTTTGGAGAATAATTCCTCTTAGCAAGAGAAGGAACAGAAGGCAAACACAGGCTTCTGTGGatatttaaaaaaaataaaataaaaaGTGCTTTTTAACTTAAATTAAGACTTTGAAGGTTAAAACTTGCAAATTTACCTAACTTTCTAATACCCTTCCTGTTGCCTGGCTCACTT-CCTGCCTCCATCCAAGGGAAGGTCACACCAAGTTTAATTACAGCACTAGAAGTCATTTCATTTCTGAAATATTTACTGATCTCAAAATACATGTG-----CCCTCTGCTAGACACCACTGAGCAAGGCGTTGGAGTGTGTTTGATCTTTTCACCTTAAAAGGTAGACTCTAATTGGGAAGCTATATAGCCCTGCTTTTGAGGCTGATGAACGGTAAACTTCAATAACGAATGAACATGCAACAAACTGGGAAT-GAATGATTTGGTGAAAAAAAAATGGCATTTGGTCTGGCTCTTGGTGAGAATATCTTTCTTCTACCAGCTGGAAATGACAGCACCAGGCAAGATGGGAATCAAAGTGAG--------------CTGAGCCTGCAGTGGAAT-TCTGGCCATCCAAGAAGGAACA----AACTTTATAATGCTCATCTGATGGGACGAAAACTGATGCTGGATTGGCTGGTGTCCTTGATTTTGAGTGGTTCCATATGGCACACAGAATTTTAAAATTCATTTTGAAAGCAGAGA-CAGCCATCAA-----------AGGTTTG---AGTTGTGTGCTATAGTACACAACTCTGGAACAGTTGCCAGAGGAAGGACAGAGTGGAGTGGTTACAGTTGTGACTATAGAAAGGTACTGTCAAGGTGCCTAAATGGCGGGCACTGTTAGCCTTCCTCTCAGGACA
s HiC_scaffold_1 134955139 1638 + 233722169 tctctctctctctctctctctctctcgtaaaAGG--AGGCAATAACAATATTGTCCTCACAGAAATTTCATGTGAATTAACTGAGATAATACGTATAACTTTttattaatactcaaaaatagt----aggtatattttactaatttaaaCTACTAGTAGTAGTCA----------GTgggtatctattttatttatgcagGCTAATGATAAATTTAACACTAATTA--CATATAGGAAATGTCTCTTAGAAACGAGAGCTTTCTTGCACACTTACACTATGCAATAAAATTCAGTGACCACCTTACCAGCTGTTTCATCTCTTCCTTGGATTTTTCTGCACAACCTATCTTTTATCTAATCTCTTTCAACTTTTGAACTGTGCTACTTGATCTTTCAATTCTTGATCTGtaaagaagaatatatatttaataattcacCCTAAGAATCAGATCATGCCTATCACTCAACCTCTTTCTGATGCCACCAACATAAAGCTTCTGGATTTCGttttatcataaatatttcaataaatccATAGGTAGCTTTGGAGATTTATTCCTGAAAAAAAGAACAGCCTTAGATGT-TTTTGAAAAGCCcctttaatactttaaaaaattaataattgggTCAAAGctgatgatttattttattaactaGGGCTGTTTGCCTCACATTcaagtaatttattttcagattttacttaaatacataattatttta-aaagcagatgAAAACTTTTtgaagcttaatttttaaaagtgaaagacaaattcaaaag--aataaaagaagataaCCTGCTCTAACTTGTCTTTTACAGGTTTTGAGAGTAATTCTACTTGGCA--AAGAGGAACTGGAAGC-----CAGTCTTCtgtaagaaattaaaactaaaataatgaaG-----CTTTTAAATTCTATAAAGTCTAATAAGGTTTCAACTAGCAAATGTACCTAATTTCATACAATTCTTTGTGCTACGAAGTTCACGGAACTGCTGCCACCTGAAGAAAACTCACACT--GTTTAATTACAGCACTAGTTG-catttcacttttgaaatatttactgAACTCAAAACAAATGTGAGAGACCCTCTACAATGCATCATGAGTCTAAACTTTTAAATAGGTTTTAACTCTTCATTTAAAAGGTTAGAACCTGATGGGGAAGGTCTGTAATCACACCACGGAGACTACTAAATGAGAAACTCTCGTGATGGA-----ATGCCACGCATTGGAGTTGGAATCATTTGGTG--TGAATGTTGATACTTGATCTGGATCTGGACAGGAGCATCTTTGTTCTTACAGATGGAAATGGTaataaactcaaaaataaaaaccaaagtgtGCAACAGCAGCAACACAGGGCATGAAATGGGATGCCCAACAACTCAACCCAGTGCAGTGCGTGTTGGTAATGGTCACACGGTAGGATGCAAACCAAACCCGGACTGGATGGTGTCCCTTACCTTATGTGGTTCCATATGctattaagaaatttaaaa------ttgaaagcaGAGAGCAgccaataattttattttttttgtttgtttgtttgtttgctgggaAA--------GGGAGCAGTAACCTAACAAGTGATATAGTAATGTAATAACACT------CATCGGAATTGCTAATCAAAGAATTTAAGTGAGGGATACTGTTAGCCTTctatttaaaaca

a score=23441
s chr3           148293948 769 + 160039680 CACCCCAAAGTAACACCTGATACACAGTAGACAGAGT---------TCAATTTCTGTGGTTACATCCCGTTTTCATCCGTCTTGTACATAGTGGCTTTGATGTTCCTGCAATCTGACAGGGAACACGGTTTCACTTGGGGAAAAGAATCAATTTCTCAATGTAAATTGTGATTTGCACACTTCTCTTCTTCACCTAGTTTTGAATTGATTTGATTCCAGAAGGACTAGGCAATGTGCAAAACAGTGCTTTGCTTGATTTAATAAACACGTGGAAAACACCTCATTGGATCAGGCACAGAGCAAAGGGCAACAATACTGGAAGACTA---GTCCCCTGTTTCTCTGTCATGCTCTTTCTACTACAACC---CTCTACTCTTTAATTAATGTACAAAGAATTTCTTCCTACATTAGCAAAGGCACACTGACATTTCCACAAAAGAAACCCATATATGTCATCATCTCCTGTTTTCAAGAT---TTCGCCTTTGGTTCCAAAGTCCAGGTTATTGAACTTGCTTGATATTGTTTCAA-TGATACAACTGAGATGTGAGCCATTTC--------CAAAAAGAGGAGTACAAAAGCAAAGGAGTTTTACCTATTCTCATAGCTCTGGCAAGGACCGAATCATAAATAGTCACACTTCTCATGGACAAGACCCTCTAAAAATTTCCAAAAATAAAGAAAATAATTGAATAATGCATGCCAGTTTTCTTAACAAATCTTTAAAGGCAATGAAGTGACTTtttttta----------attaggtattttcctcatttacatttccaatgctata
s HiC_scaffold_1 134958827 782 + 233722169 CATCCCATAATAAAATTCTACAAACCATAAGCAAAGCATTAAATGCTCAATTTCCATTTCAAAACCCTGTTTTCATTCTCATTGTTCATAGTTGCTTTGATGTTCTTGCACTCTGACAGAGAGCATGGTTTCAGTTGGGGAAAGGAATCAATTTCTCAATGTAAATTGTGATTTATACACTTCCCTTCCTCAccta-ttttgaattgatttgaTTCTAGAGGCACTAAGACATGGggaaaacactgttttgcttgatttaatAAACACTTGGAAAATGGCTTATTGGATAAGCCTTAAACCAAAAACTAgcaatccagaaaaaaaatgcattttattttccactgtcaTTCCTCTTCTCCTTGTTCCTATCCCTGCTCTTTAATTAAGGTACAAAGAAATTCT---TAGGTCAAAAGAAG----CTAGCATTTCT-CATATGGCAACTGTTTACCTAATaataaactatttgcagaagGCACTTAATTTTGGCTCCAAAGTATAGTTTATTAAACTTGCATGATAATGTTAAAATTGCTAGAACTCAGGGATGAATCATTTCCATAGGCTCAAAGCCAGGAATGAAGCAGTGAAGTAGTT-----TATTTCTACTGTTACATCAATGAGCAAATAAAGAACATTCTTAATACCTTTAGA-AGGTCACCACAATGTTTTGCA-----GAAGGGAGT-ATTTAATGATGCATGTGGTCTTATTAAATAAATAGCCAAAGGTAATGGAGTGAATTGTTATCACATACATAGTGTTAGCTATT---CTTAAACACTTTGCTTATGCTGTA

a score=40204
s chr3           148295423 2335 + 160039680 TCAATTCAGGACCAAAGATGATGGAAGTTTATAG----TCATTCAAACTCTCTTGAATGGCATTCGTTATGATTCAAGGTTAGAGCATTGG-TGAAGTCTCTCAGGTAACCATCTAGTAATCACCCTGTA----------TTTTCTCTCTTGCCACAGTAAGTTGGGCTATGGATTCTGAGTCACCACAGCTGTTGGAAACACCTTTCTGAG---GGAGGACGGCCTAA-------------TACATAGGAGGGGCCCACCTGAATGAG-GATTGGCAGGAGTGCCCTACACATAACCTTTTGCTATGCAAAGCTCTGTCAATCAAAAGTGACAAG--GCTTCTAACTGGGCAGCACCTCCACGCCCTAGTAAAAGTCAACAGG------AGTCTGCACACTCTTGC--TTCTGTTTTCCTTTCAACCCAGATTTCAATCCCGGGTACGGGTGTG-GCAGCTCCACCCAATGTGAAAGTTCTTGATAGTTTGTCCTGTGGCATCTGAATTCTCAAACACCTCTTCGCTCAGAAACAAAAGCGGTTATAAGAAAAGTTGCCTTTAAGAGATGAAgaagtaggtaagatgcctcagtagataaggcagcttcccagtcaaactgacacccattcctcagtccctgggacccccaagatagaaagagagaactacagcccccacTTCTGTGATAAGCTGCTTAGAAA-----GAATGAAATATTTGAATGTAAAATACCCAGTTTAACTT---GTTCCCATGAGCCTGGGTCACATCTTGGACAGACTTTCTCTCTGTCTTCTTTTACGTTTATATTTTTGTCATTCAGGGATGACGGTTTTTATGGAAAG-TGTTGGTAGTCTGCCATTTATATGCAGATTATTTCCTGTTCACTTTCCTCATTGTAGCTTCAAAGTTAAACAGTTGTGACATGCAGGGTGTTGATAAAGAGCGCCCGTGTCCATCGCTTTAAAAGATGGGCAGGCAAATC--CTCATTTCTTTATGATTCCATAACCTTGACAAGCTACATCCCAGTTCTTAGCTTTTTTCCCCCTCATTTATAAAATAGAAACAAGTATGTTATTGTAAGGATTTCAAATGTAATAGATAAATATGAAAAAGTACTTAAGTCAATTAGTAAAATTTAGCAAAAAGCAAAATTATG---CTTAGGGATTATAATAACTATAGTCCAAATTATAATAATAAAGGAAACAGTCATAAAGTATTAAACAAAAGCAGGGAATCTTCAAAATCTT--------TTTTAAAATAGCAAAGTTTC-AACCTATTTATGGGATATGATTATTCATCTTGTTTATGCATTTGTGAGAGAA-CCAGAAATTGC--CGTAGTCAGTCTC-GGGCATAATGTAGCCTTTCTCTAATCATCCAGAACAAACTTCTAGAAAGACACATCTCTGGG-GAGCACCATCAGGCTAGCTTGGCAATATCAGAAGATCATTGATTCAGAGGTCTGACAGGATGGTAGAGAGCCTGCTGTGGTGAGCCATGGTGAGCCCCGATGGATCCTGGCATAACCAGAGGAGGATTTTCCA--CAAGAGACA--GCCACAGCAAGAGATCCTAAAATTATGCAACATTTTCCATTAAAACTAAGAGAGATCTCAGAGTCTCTGGATGAGCA--CAGGCTTTGATTAACTGGGCC-TTTATACATCTGGTCTACCTGAGATAATGAAGCTTATTTATAGACTGGCCCTCTG--------GATAGTTCTT--GTGCCCTTCAGAGTTCGTCCCAAGAATGCTTTGCAGTTTATTAGACCTGGCATGCAAAGTGGATGCTACTTGCCACTCTAGAGACATAATCTGTCTTCAGGTTCAAaatgaagagagtactggctccaagtcagacaaccagatttgaggttctgggcccagcattgacaatcactatatataaacttggacaggcccctggcccagcttctcc-agcctgactttccataccctgaagttactgatttta-tagctcctctccctatctcataaggctgttataaagagcaagtaaTGAAAGTTAGTTTGGAAGGAAATTAATACATATGGAGTCCTTTA-ATAAAGGCAAAATTTT---GTTACTG-ACAG--TCAGTTCAAATACAAAATTTTTCACTGAAGAATACATTAACATCTTAGCTCTAAGCACTTTCATGTTTGAGTTAGC-TTTGAAGGGCCATCATACTT--------------TTGCTACC---------TGGGTTGGAATGTTGACATACTTGTTTGGAGAGCTAGTAGCACTAATGTAACAGAGCCTCCTCACACTGAAAACTTACAAAGAACTTGGAAAATTCAAACACCA-TTCTAGAACCCAGTTGTAGTAGACACACATGTGTACCACCTATCACAATGTATCCCAA--TGCCATTGAGTATTCAAAAGGTAATAT-TACGTTTATAT
s HiC_scaffold_1 134959636 2250 + 233722169 TCACTTCAGAATAAGAAAACTTGGAAGTTTGTGGCagttcatttctattttcttgagCTACTTTC--TGTTCATTGGGATTAGAACATAGAATGGAGCCTCTCTGATAACCATCTGGTAATCATCCATTGAAAACAACCGCTTCCTGTCTTGGCAGAAGTAGACGTGTCAGTGATCCTGAATCATAGCAGCTCTTGGATACATCTGT--GAATCCGGATAACCACCTAAGCAGCTGTAGATCTTCACAAGGGGACCGGAGATTAATGCGTGAGCAGAAAACGTGCCATACTAGGAATCTTCTGTCGTGGAAAATTCTGGAGACCA-----GATCAGTTGTTTCTAGCAGGAAAACAACACTAAGTTCTGGAAAAAGTCAAAGGGCATCTCAGTGTGTAAGATTCTGTAGTTCAGTCTTCTTT-----ACAGAAATCAAACCAGAGTGGAATGGTGAGCAGTTTTATTCCTAGTGAAAGTTCT------------------CATCCAAGTTCCCA--TTCTTGTGTGCT-----------------------------------------TGGGGAAATAACTGGTAGGCTTAAG-------AGCAGGATTCTA---AAACT-------ATTCTTGGGTCAC----------ACTATGAAATATAATCATTACAA-------------GAAAAGCTCCataagaaataaggaaagaaaagtctaAATGTAAA-TAACCAACTTACCTTCTTGTGCTCATAAATGTGACTTCCAATGTAAAAAACCTTTCTGTA-ATTCTCAACCACCTTAA--------------------GACGACTTTTGTAAAAAGGTGTTGGTGACCTCTCCTATAGgttc----tttttcctctctgcttgcctcattttatcttcaaaattaagCAGATGTGATTCAAAGAGTGACAGTTACAAGCACTTAAATtgag-gaacaaaaagaaaagtatgaaaaCCGTCGCATCTCTTAATCATTCTGTGACTTTATCAAGTTACTTCACATCTTTAAGCTTCATTTACT-TCATTTATAAAACTGAGGTAAGTATGT-GTTGTAAGCATTATGATTAATATAGATAATT-CACATAGGTGCTTAAGACACCTCGTAAAACTTC---AGAACCAAAATCATGTGACCTagg-ataataataatgataatattaatttttctcagagttaaaaatatcatgcattattaaataaaaagtgaaaa------aaatctggCATCTGGTCATTAAATAGCAGCTTTTTGAACCTCATGGCCAAGGAGGTTTATTCATCCTGCACATG-ATTAGTGCATGAagtcagaaaatatttcagagtCAGTCACTGGGCATGATGAAACCTTTCTCTAATTATCCAGAACAAACTTCTCGAAAGACATATCACTATGTGAGTACCATCAGGTTAGCCTGGCAGTAACTCTGAATAATTGATCCAGAG-CCTGATATGACTGTGGAGACCCAGCTGTAGCAAGCCAGGGTAAGGCTCAGAGGGGCCTGGCATGATCAGAAGAGGATTTTCCATCCCAGAgtcaaaggaaaagcaaaaaatttaaaaatttggaagAATTTTGGTTTAGATGTAAAGAAAGCCCCAAGAACTTTGAATGCCCTATTTGGAATTATATGGCTGGGCCCTTTGTATATGTGG-----------------ATCTCACC-ATAGAAATGCCCTCTGCTCACCTGAATAACTCCTCGGTGTCCTTCAGCACTCACCTCAAGCAAGCTTTTCAATTTATCAGGGTTGCCATGCCAAGTAGACACTATTTGCGGCCCTAGACTCATAATCTGTCTTCAAGTTAGAAATAAAGAGAGCACTGGGTTTGAATAAAAAAGCCAGATTTGAGAATCTGGGCTCA-TACGTATAATCTCTATATATAACCTTGGGCAGATCTCTGGTAAAAGTTCTTCAAGCCTAAATTGTCTCATCC--ATGTTGCTAATTTTATTTGCTTCTCTGACATTCTCAGAAAGTTGTTCAGAAGATCAAATGATGGAAGTTAG-TTacaaaaaaatttgtaaatattgaGCCCCGtacaaaaatgaagcatttttaaattaatgcacAGTTTCACCTCAAAGTTAAAAATT---AGTCAAAAAAACATtataatatgaaattttattcttttttttttt---ttaccattagaAGCTCAATCACATTTAAGTAGAAATTTTCATGCTACTTCTCTGTGATGTGTTGGAAT-----CCTGTTCGTTTAGAGAATTAATATAGTACATATGA--------CTCTGGACTGAAAAGTTATCTAATATTTAGATAATTTAAAATCTGCTTTTGAAATCTAGTTTCATTAGATATAAAT------CAT------CAATGCATTCCAAATTAACATGCAAAGTACATAAGgtcatacatatatttaaat

a score=23020
s chr3           148299043 1444 + 160039680 TTTTTTCAGAAAAACAAGTACAGAAAGTTTCCACATAAATATTTTATTTCTAAGACAAAAATCAAGAAAAATACCGGAATCCTAATACTAAATTTGGATGATAAAC-CTCTATACATCTTCTAGTGGCTTAGAGTGCTTGCCAATATTTAGGAAAGTTTGTCTACTTCTGTTAAAATAAAAATGAAAATTGACGGCTGCCTTTGGGTTCATAACTATAATACAGATTGAAATTTAGAAATACAATCGTCTGGAAGTCCT-CTGCGTGAACTCAG---CTGCACAGACTATGCAAACCTTCCCACACAT--GGGTGACTG--AACCCGACAAGTTTTCTAATCAAAAGATCCTGGGCCATTGAGTAAATGGTATTTTAATAGCTTTCTGACCACCCTTGAAGCAAAGCAAAATGGT---AGCTATGTGC-TTTAATCTGTAACTTTCTCTGTCTGCATCAAGTAAGGATTTGGATAAC-AGCTCCTTGGGTCAGTTGTACCAGATCTTCAAATTATTATCAAGTAATGTCAATTAAACCCCCTGCATCACTGGCTGACCTTACCTGCT-AGATAAACTAGAAGCCTTCTCTTATAGATCATCACTACTTAGACTGGAAAATGATTAGATGTGTGCTCTGTGCCAGGGTTTAGTCCATGAATTTATAGAAAAGCATCTACTGATTCACCAATTCTTTCTGCTTCCAA----GTCTGGAAGCCATGCCTTG-GTCAAGGCTGACTGTCAGTCGCCCAG------CACGGCTTAGCAGTA-ATATGAGCAACTCATCTCCAGCTATACC-AACACCGTGTCTGCCC-AAGAGGACTGTT--GTTGCTCCATCCTTCTACATATCTGCTTGTACATTTTGTAGTTTGAGCGGTCTTGGCATCTTCTAAAAAAATACAGCCAGGATCTATGTCATCTCATCGAATGCTGT-TCTGTTTTTGCGAGAATTCTACTCTAATCCA----TCCCATCTTA--------------AGAATT-----------------TTATTGGTGGTGTCATAAGAA---TAACT---AATATCCCAAT----------------------CTGAGTCAT---------------CCTCTGACGGTGGCCACATCAATGATAGCTAGTTGCTGCGGTGGCTCT-------------------ACACACAATGCATCTGGGGGCTTACTGTGATGTTTCACACAGAG------AGAATAAATACGTTACAGGATGTAATAATTTTACACTCTGAGGTCAGGCAAAAAAGCATTCCCCAATTTACCTGCAACAGCAGTTTCAGTTAAAGGGAAATAAATTTGAATAATGTGCCTTCTCCCTTCGAACAGAAATCG-GTGGCTCTGTGAGTGTACTTATGGTTACTTCACAAGTGATCTGCCTCTGCAATGTTTTGAAGCTTTCTCATGCATACTTTTATTATCACCCTTTTTATTATTAGTTTTACCTAAAAGTATTTCTGTGTGCTACAATT-TATTTTGAAATGCGTAATTATGAGCTCCGCAAAGTTGAAATATTTGTGATTAAATAGTGCACAATGAA
s HiC_scaffold_1 134963649 1495 + 233722169 ttatttcagaaaaaaagct--------tctttatattaatattttacagGTTAAACAAGA-TCAGATTACATACAGTTAGGTCAATAACAACTTTAGACGACAAAAATTCTGTATACCATCAAATGAGTGAGAGTTCATGGCAATATGAAAGAAGATTTATTGATTTTGAATTaagtaaaa-tggaaatatacTG-TGCCCATG-----ATTATTCTGAtgaaactcaaaaattaaaaaaa-----atttggaaatccTACTACCTAAAGCCAGTAGCTGCAC-------GCAGATCCTCACTTTCAGCAGGACGTTTGTCAGTCTGACAATAACTCCAACCCAAGATTCCTGGGAAGCTGGCTAAATGAGCT----GTAGCTTTCAGCACTACACTGTAGCAAAGTATAATAGCTAAAGTTCAGTTTATTTAATCC-TAAC---CTTTGTCTGATTCAAATAGTTGTTTGGATAACGACCTTTTTGGGTCAGCTGTCCAAGCTCTTCAGATTTTTCTCGAATAACTTCTTTTAAATCCTGGGCACCATTGCCTGGCCTTACCTGCTAAGGAAAATTGGAAGCTCTTTGTTATAGA--GTCACTACTTACACTAAAAAAAGATTGGATTTGTGCTCTGAGTCACAGTCTCCTCCATAAACTTAGAGAAAA-CATCT----ATGTACTGAGACTATCAGTTTCTAACTAGTTCGAGGAACTATGGGTCACATCAAAGCTGATTGTCACTAGTCCAGACTTTCAATATCTTAGCAAAATAAATGAGCAGCCAACACCAAACTGTGTTAAATGGTTTGTCTATCCAAAAAGGACCATTCAGATGGaacctttttttatttatataa-tgacCATTTTGCATTTTAAGCCCTTCCTACTTCTTCTAAAATAA-ACAGATAGAA-----ATCATGTCAGAGAATGCTATATTTTCTACCTCTAAAATCCTATCTTAATCTATTGGTTTAATCTTGTCTATTGGTGCAGTAGGatttaatcttttattatttattactctTATTGttactgggaatctaactcaggatctTCCATTTGCCAGGCAacagcttatgctgctgagctataacctgAGCTCCTAACCTCATATGATGACCACTTAAGAGATACCTCTTCAGTGTAACAGATCTTGCAAAACTATACCACTTATCAGACTATTCATGTTAATAGCAACTATAA-ATATTATACAGAGATGCATAGAACAAGCTTgttagaga----aataattttatgttct-aAATGAGGCAAAAATGAATTCACTAATGTACCTGAAACAACAG----ATTTAGAGGGGTAT-AATTTGATCAACATGCTATCTTTATATAAACTCAAATTGCATTGCTTATCATGT---CCTATAGTTATTTCAGATGAAGTATATTT---TAGTAGTTCAAAGCCTTCTTGTGC--------CTTCTCAGActcttattttttagttttacctAAAAGTATCTTTATGTACTACAATTGTATTTTG--ATGTGTA---------CCCCAAAAGTTAAAATATTGGGatgaaaatattgaagaaaaaa

a score=77775
s chr3           148302706 5699 + 160039680 [encoded data, 6238 characters]
s HiC_scaffold_1 134968925 5712 + 233722169 [encoded data, 6238 characters]

a score=30935
s chr3           148308906 1110 + 160039680 TTTTCACGGTATTTTACAGTTCATAATAGTATATTGTTAACTACAAGTATAATAGGGTTTTTATAGGTTTAAAAAAGAAGCAGAGA---ACTTGTCTTGTGGTAATACTACTATTTGAAGAGAGGAGAATTTGTCATATACCAAAAGAAAAAAAAAATCCA--CTGATTATATCCAAAGTATGCCAAGTTTTTTTTTAATCTATGTGTACAAATGAGTGGTTTCAGATACTAATGTCCTTGCATAATAATCTTTAGTACTTCTGCAATAACTATTGAACCCCTTTTATTTTTAGAAATTCACAGATTCTCACATCTCTCAACCTTTGCTACAGTCTTCTGTCTGATCCACCCAACAACA-CTGCTCTGTAAGCAAGCATTCTCTAAAACCCAGA--GTAATTCATTGGT-TCAATACCAATGACACAGGGGATACCAGGTTTGTCTCT----GGAGATTTGAAGCCTCTACTCCCAGCTTCAGTCAGAACAATTATTCATAAGTActgtgcctctttctcatattttataatcagtaaaattaatacttgctctgtttatttcttatgtctttttgagaaaatgaaatgaattaataagtgtgaaagT-TATTACAGAAGCTGGAAGTTCTAGAT-GCTATATAAGCCTTGTAATTCTTTCAGAACATGATGCCAACTTGTATTATGAAACATCTATTTAGAGAAATAAAGAAAAATACAAATTTACAGCTTTCAACACAAGAAAAGGGCAGAACTTTAACTGAAAAGGCACCCATTCCTTCTGAAAAGATAAACCCATTTAGAAACTACATCTTATTTGATTTATTTTCATATCTGAAACAATCACACATAACATCGCCTCTGGCCATAATTAGTATCAGAAACATAAGCCATTTATCAAATGCACATTGTCCAAGTGATCAGGAGTGTTTCAGAA--------CTCCTGAAACTTTCCACTTAATGAGC---------------AGAATAAAAGACCAGGCCTTCCAAACATAAGATGCAGGCAAATTCAGTTTCAATTGGAATTACATGCCAAGTTTCAACTAAGGTTTTAGTGTTTGTTACTATTTCTTAAATATTGATGTAGTCATGTATCTGAAGAGGATATGCACCATCTCAGCTGTGTCT
s HiC_scaffold_1 134974642 1000 + 233722169 ttttcaCA------TAAAGTTTATAATT---TGTTCTAACCTCTaaggataa-aatatatttatatttctacaa------tagagatttatttttcttgtgataAGACTATTATGTGAAGAGAGGAGAACTTATCA-------------------AGTCCAGTCTAATGACACCAAGGTTATTCCCAGGATTTTTAGAC------------AGTGAGGGGTTTCAAATATTAATATCCTGCCATGATTACCTT-GGCATCACACTGATGATAGTTGGATCTGTCTTATTTGTAGAAATTCA-ATATATTCAGCTC-------CTTTG--AAGATCTTTTCTCTGACCCACTCATCTGCAACAGCATCATAAGCAACCAGATCCTAAAAACCTGACAGACGTTAATTGGAATTAGTACTGAGGATCCAGGACTGA--AAGTCTGTGTATAATAGGAGGTCTGCAACCACCACTCCATACAATGTTCAGAGCAATTATTCATAGaaattttgttcctttctctctttttataaaCAGCAAAATTAATACTTGCTCTATTTACTTCTCATATCTTTTTCAGGAAATGAAATGAGTTAATAAGTGTGAAAGCATATTAATAAAGTTGAAAGTAGGAGACAGCTATATGAGAC--ATAATTCTCTCTAAACATGATGCTAGCTTGTTTTACAAGGCttctatttagaaaaataacaacaaatataaatctACATGTTCTGATACAAATAagaaatagaactttaa-------------------------aaagataaacctTTTTGGAAGTTACAcattatttgatttgttttcacATCTGAAACAATTATCCATAATGTTCCCTCTGGCCATAATTAGTATTAGAAACATAATTCATTTATCAAATACATGCTGGCTAAATTAGCA--AGTGTTTCACAAGTGATAATGTCCAAATTTTTTCCACTTaatgaacaaatttttttattaaaaaaaagcagactAGGCCTACAAAATATAGGAtaca-----------------------------------------------------------ttaaaatttcttaaacCTTGATACAATTATGCTGTCTAGAAGAATATGTACAACCTCAAATATGACT

a score=33087
s chr3           148314843 1240 + 160039680 TCACCACTCTGACTATGCCCATGAAAATAACCAAAATACCTAAG-TTGTACATCTTGGACCTTCTTTTATTTCTAGTTTCCATGTCAAATAATAATACAATTCCAGATCTCCCGACT----------------------CAGCTGAAAGAAAAG------CAATACTAACTGGAG------------------------------ATAGACACAATTTTCAGTCTAAGTGCTTTGATGAAATGATCCCATGATAACTTGTCAATGGCAGAG-----TTTTAATTTCCTGGAACTTTCTAGGACCAGAAGTCATAAGTTCA-GAGGCACCGCATCATGCCTCATA---TTCAAAT--TTTTATTAGAATCACTATCACTTAACTAAATTTATACAAAATCAAAATGGGAATGTGGGGCATAGTTTTTCTTTTTCTTTCAGGtatttatttatttatttatttatttatttatttatttatttatGATCTTTTTGGACTCTTACTCAGGAAAGCTTACCT-TGAGAGTATAGTACTGGACATCAAACCCTTAGTGTTGTTGGAATTAACACAAACCATTTTGTTGTTGAGTAGAGAGATATTACCTAAAAGCCAGAGTTACAGATAAGAGAGTGTTCTGTGTTACCACTCATGCAGCATACAAACATCAACTCCAAATTAAACCAGCTAGATTCCAGAAGAGCCTGGTGCAGATGGCAGTAACATAAGGTTTATGAAAACACAGAATGCGGTATTTCTAACAAACACACTTGCTTCCAACTTCTTCTTACATAAATAAGTTTTGTATAGTTTAATGTTTCCCCACCAAAGTTTCTTTCAGCAAACAAACAGCTTTTCTTCTTCTTTGGGTCCCTCCCAGACATTGAATTAGTATATGAAATGTATAATATAGAATCACCAAAATCCTGTCATTGTTCATTGT-TACTGCCTCCAGCTTAACTTTCATATAGAACCTTTTCTTTAAGGT--TTTGATTCCCCACCTTAACCCAATTCTTATTAGCCCTTTTCCCTGCTCTACTCTTTCTCTCAACAGCTCATTT-------GCAAGGAATGTAGTTCAATAGAACAGCAGCTGGTGTTCTGTTGTTGGTAACTACTGCGTATAACACCAGATTCTATTTTTATTCCATAGGTAACCAGCTGTCTTGAGTCACTCTTCTGTTTCAAGG-TTTTCAGAAGTTCTCCCTCATCAAGGATTGAGTTCTTGAAGTGTTACCCACCAAGTGGA-----------AATAGTACACTGATCTTCAGGAGAGGCTGTTTTAAGCGGTGATTCTCCAGAGACCCTGTATGCATGAT
s HiC_scaffold_1 134979889 1246 + 233722169 TCACTGTCCTGTCTCTGCCCCcaaaaacatttccaa-acttAGGATTTTACATTTTGAGC--TCTCTGATCACTATCTCTTAAGTCAAAAAAGTGTTCCATTACTGCTGTAtccaatttttatttcaataaatgtcacacaactaaaaaaaaaaaaaaaacaaggcaaatTGAAGTGAAAATTAATTAGTGAGTGGTtagctaaaacaaaaacaatttttagtaaaaaatgtttaaaaaga-----ccGTTGTGTATTCTCAATGATAAAAAGCGCCTTTGCTATCTTGAGATTTCATATACACAGAAATTATTCACACAAGAGGGAataaaccactttttaaaatttttaaatatttttacttgaaacAGCCTcaattaaat---cttttaaaaaagttaaatatgaaTGTGCAACCTGGGATTTCTTTATTCTTCAGATATTcaatcatttttt----------------------------atcttttcagatcCTTACTGAATAAACCCTACTTCTGAGAGCAG-----TGGACATT-----TTAAGAGATGATATATCTTCCCCA--TCATTTTGT-ATGGAACaatgaaatattagccagaaac------TACCAATAAGGGAGTGTTCGGTGTGAAAATTCATGTAGTGAACTAACATCAACTC-AAATTAAACCAGCTAGATTCCAGAAAAGTGCATTACAGATGGTAGTAACATAAggtttataaaaacacaaaatgcaaTATTTCTAACAAACATTCTTGCTTccaatttttttatatataaataagttTTGTATAGTTTAATGTTTCCCCATCGAAGTTTCCCTCTCCACATAAACAGCTTTTCCTCTTC---AGGCATCTCTCACACCTAGA---AGTATCTGAAATGCATACTACAAAATCACCAG-----TGTTTCTGTACTTAGTGTACGTCTTCCAGCATAACTCTGATGTATAACCTTTTTTCTgaagttatttgttt-------tta----aattcttattagtCCTTTGCCA-GTTCTGTTCGTTCTCTTAACACCTCATCTGACGGAAGAGAGAGATGTTGTTCAGTAGACTCACAGCTGGCACGC--CTGTTGAGAACC-TTGCATATTACACTGGGTTACACTTCTATTGCAAATACAACAAATACCCTTAAGCCACTCTGCTATCTCAAggagttttaaaagttttccttcaTCAAGTATTGACTTTTTACAATTTTTGCTGCCAGGTACAAAATGTATTTCAATGGAATGCTGATCTCCAGGAGAG--TAGTTCAGGCAACCATTCTCCAGAGGCCCTGGGTGtacaat

a score=30636
s chr3           148321192 876 + 160039680 CTCAGCTTTCCCAGGAAGTGCACGCTTCTTTCTCCTTGTTCCTTCACAAAGACTTTGCTATGCAGTTGTAAGAATTTAAATGAAATTTGTTCAAGTTTGCCTCGATTCTACACTTTGAAT---------CCATGTGAGTTTGCTAATGGTGGTCTAACTCATAAGCTACTGAGGGCCAGCTAGGGAGTCCTTCATCTAAGCAGTTTGATAGTTTCAATATGACTTTGCCTTCATGTGAGAAAGAAAGATGCCTAAGCTATTTTTGCCCTGCCATTCATA---TGAAGAATTATTTATTATTTGCAATTATTTTCTTATATACCAATTAGCGCACAAAA----AAATAATGTGAGATGTTTACAGAGAA--ATGTACTACCAGTCTTTGCAATGTCTTCAATACAGACACATTAAGAAAAAATTTTAACATAGCCAGAGCCTTATGATAATAACTATTTTATCTCTTTTATTAAAAACCACAAGGATTACAAATAATTGCAGTGTTATTTGTAACAGCCTCTGTTTTGGACCCA-AATCTCATAAAGTTTGTGTTATTAGAATTGACCATTAATTTGCTCTGCATCAATTGAATTTCTAGCAGCTTGGCGATAGAATTAAACCACCCCCAGGCAGGATTTATAAACAGACAATTATGTACCCTTCATGTACATAATTGATGTTTTATATGTGATAACAAAATATTATATTATCGACTTAGAACTAACATACCTCCTTCTCAGTGACTG-CTCTGATAAATGTAAGCCTACATTAGCCTCATCTTCGTGATTGCTTCT-AATCCCAGACAGAACCGGGCACTATCAGTAGAAAATCATTTCTCAGCATAGATGTGAAAATGCACAAT-TTTGGAAATGTAAAATGAACATGTTCCACTCT
s HiC_scaffold_1 134982434 875 + 233722169 CTTAGCTTTCCCGGT---TGAATGTATCT-----CTTGTTT-TTCATATAAACTTTGTTAAATGTTTATAAGAATGCAAACAAAATATGTCAAAGTTTGCCTTGA--CTATATTTTAAGtaactttttttcctctaaatttacTAAATGCAGTTCATCCCTAGGTCTAGCAACTGCCACCTCAGTGGTTATT-ATCCAAGGTATGTATTTTTGGCTGCCTGG-TTTGGGTccagaacagaaataaataagctCAAACTGAATATGCTAATATGTTTATAGAACAAGCAAGGATATATCATTTGTAATGGCTTCATTACATATCAATTagcacaaaaaatttaaaataac---aaatatttacataaaagaaTGTAATATAAATCTCTCCAATGCCTTCAATATAGGAATATTAG--CAAAATTTATACCTAACAAGGGCTTTAGAATAATAACTATGTTATCTGTTTTATTAAAGACCACCAGGAGAACTAATAATTGAAATGTTATTTGAAACAGCCTCTGCTTTGGACCTATAATCTCATAAATTTTGTAATGTTAACATTGACCATTAATTTGCACTACATCAATTGAGTTTCTATCAGCTTGACAATACAATTAAACTA-TCCTAGGCAGAACTTTAAACTAGGCAATTAT-TACCCTTCATGTACATAATTGATGTTCTGTATgtgataacaaaatattatattatcGATTAAGAACTAACATGCTTCACTCTGAATGATCACCTCTGGTTGATATAAGCTGGCTTTACCttcctatttcttatt--ttctaaatctCTGACATAACTGGATACTgttgatataaaataattt-tcagggtGAAGATGAAGACAGGTAACATttagatatataaaatgtacaGATACCATTTT

a score=55704
s chr3           148326566 1912 + 160039680 aTCTCTCTTCTTAGCCTCTAACCGAAA--TCATTTGACTCTTGTCTTAATGGTGAATAGGAGCAGTAAATCCTAGGTCTGAGTGATATAATGGATCCATTTTGT-----TAAAA-----GTGTCATGACAAACAGCTT-TGGTGTTATGTCTGTATGAATCCCTCTTTTACATGCTCCCAACTATGGCAGGCTCACCTGTACAAGGACTTTAATCTCAATAATAAAGTGATTACAATAGCCCCAGGTCCTGAAGCCCACTTCATCCAGAAAGAAACATGCAGT--GGTGCCCAGTTTCTTGAGAAAGTCTTGGA----------------------TGCACCACAGTGCCAAGGAAAGCCAAAGATGCTTGTTTGGAACAATGCCACTTTAATTAAACAGTTCCTATGCACATAGGACTGTTAGTGGTGACAGAGTCTATCTCTC------TCAACGCTCCTGGTAGTA----------------------GAGGAAATGCCATCTGTACTAAAGCAGACCTTAGCCTAAGAAAATAGATGTACAA--ATTGTCTGTGGTCAGC-----TGAGACAGTTACAGGTTCTCTGACTTAGGTAATTCTTCAAGCTAGTATTCATA--ATCATACAGGGT-GGAAATTACAGTCTGCAAAGT-TTTATATATATGGAATGAGAGATAAAACAGTCCAAAAGAAAGGAATGATTCCAGGGTCATTTTCACATTTTATGGGTCAGTGTCTTGCAATTCTTTTTGTCCAGCCCTCTTGATGCAGTCATATTTTTATAGTTTGTTGGAGAAAATGTATTGAAAAATGGTGGATCTGTGACCATGTTTTCTTTTCTTTTACCGTAAAAGCCCTCAGGGGCTGCATGTTTGTCTGAGCAAGCTGTCAGCCAATTAGAGTTTACTGCTGAGGAAGAAGCTGAGAAAGTTAATCCTGCTCCTTCAAGGCATAGTTAGAACGGAAATATGAATCTTAAGTAGTACACGTTATTTCATCAACTGAGAACCAAGAGAGACTGGCTAGGCAGGGAGAGGCAAGGACACTTTTAATAAGCTCATTTAAGGAGG-AAACCACAGCATACCCAGAAGAAGTCA-TTCCTTCCTTTGGCCTGCGA-TGAAGGA-AAAGAGAGTATTAATGAGTCGATACTGACATTTAAAACACCCTTCTTCAGAATGGTTCTACTGATAAGAATTGCTACAATTTAAAAATCAGTGCACCAGAAACCAGGAGCCCTCTATCCATATCCAGTTCTGATG-------ACAATTCTCTTCCCTTGCTGGGTCTTCTGAACCTTCCTGTGTAGCAGA--GGTAATAATAGCTCCAGTAGAATCTTTAAGGATGTGAGGATATATCTGTTGAGAATGAAAAT---CTTTGGGAGCATAATAAGGCAT----------CTTGCTCTACTCCATGTCATTCACTTCTGGGCCCTGGTCTTTAAGATAAGAAAGCCAACACAAATCATTGGGCCAGTGGTGTTGTAAGTAGAACCCACTGTTTAAGTATTAGCCAAG--AAAGTCTCCTGTGAGGGTATTCTTTAGTCTTCCTTTCCAGAACCTTCTGGTTTAGTTTGTC---TATGGTAGGAACAAATACATTTAAATAAACAAAAGAAAAAAACACCACAAGCAAACATATAACAATAACAATAATAAACCTCTCTAGATTATCTTTATCG--------------TATTGATTTAACCCATCTGTACTATTTTCCAGTAAGAAAATTGGCCTCTAGTGGAAGAAATGAGTA-AATTTTACCAACTAACCACTCATCTAGGTATACATATTAGGTGTATTAATCAGTAGCAAGAGTGAGAGGTTATAGAGCTCTTATATGGGGCTAATCTAATGCT-GACACCTTTAGGAAGAAACATAAATTGTATAAAACCTTTTCTCTGGGGTAGAGCAATCGAGTAAGAGTGGATTTGTAATTGCCTGGCACATTTAGGACTGAGGAAATGATAA---------ATGCTAAATGGTGTTAGTAGGAACCTATGTCC
s HiC_scaffold_1 134986916 1901 + 233722169 atctctctttttatAATCTTATTAAAAGCTCTTTTTATACTTGGTTTAATGGAGAATAGAAGTAACAAATCCCAATTCTGAATGATATTTCTGATAAGTTTTGTAActataaaaaagggggagaataacaaaaaaattatgggactttttctatgtatttctcTTGATTCTGTCCTCTCCGTTTTGCCAGCTTTATCTGTAGGATGGCTTTACTAATGATAGCAAAATAGCAGTAGTGGCCAT-GCCTCTGAAGCCCACATCATCGTGGAAGAAA-ATACATTCCAGTGGCAAATTCCTGGAGAAAGTCGTGGACTTTAGACTGACTGAATCGCCCTACTCTTCAGTGCCAAAG---TCTTGCACTGGTTGTTTAGGTCTGTGTTACCTTAATCACCCAGTCCCTGTACACAAGGCAGCACTGGCAAT--TAGGGCCCCTCATTACCCAAGTCATTGCTCTTAGCAGTATAAAACAAACACTGTAGAAGCTGAGGAAAACACAGGTGTCC---AGTTGACATCCGGATAATTAAAGGCAAATACAACGGCAGTATATGGTCATCAAATTTGAGATTGTTGAAAACATTCTGTCTGTGGTGATTCATCAAAGCATTGTGCATATAGTCATGCCTGAttggaaattaaaatgttaagaatatttttttctacagGCCAATAGAAATAGAATTTCAAGAAGAGGGAATGAT-ATGGGATTATTATCAAGTTTTATCGgtcagtatttcatatttttgttt---tagcccctttgacatagtcctatttttatagtttgtgGGAGGAA-TGTATTGAGAAATGGTGGATCTGTGACCATGTTTTCTCTTCTCTTACCATAAAAGCCCTCAGGGGCTATGTGTTTGTCTGAGCAAGCTGTCAGCCAATTAGAGTTTACCGCAGGAGAAGAAGCTGAGAAAGTTAATCCTACTCCTTCAAGGCATAGTTAGAAAGGAAATATGAATCTTAAGTAGTGCACGTTATTTCATCAACTGAGAACCAAGAGAGACTAGTTaggcaggaagaggagaggacagTTTTAATGGGctcatttaaagaggaaaaccaCAGCATACTCAGAAGaagtcatttctttcctttggccTAGAATTGAAGGAGGAAGAAAGCATTAATGAGTCGATACTGACATTTAACACTCCCTTCTTCAGTATTGTTCCACTGATAAGAATGGCTATAATTTAAAGATCATTGCACTAGAAATCAGTAGCTCTATATCTTCTCCCAATATTAGTGACCTTTCACAAGTTCCTTACCTTTCT-GGTCTTTTAAGTCCTCCCATGTAACAGAAGGGTGATAATGACTGCAATGAATTCCTTAAAGAGGTGATGACGTATCTGTTGAGAAATAAAATCTCCTTGGGGAGCATAATAATGCATTTAACCAGAATTTATTCTATTTAATATCTTTTTACTCCAGGCTCTAGTTTTCAGAGGGAGAGAGACATCACAAATCACTTGATCAG----GTCACGTGCAG----CAGTCTTCAA--ACCAGTTGAAGCAGAGTCATCTAGGAGAGTTTTATAAAAACATGCATCTTGGAATATTATGATTCTGTTTGTTCAGTATGGGAGGAAAGGATCCAT---------------------------------ATCTTTTAAT--------------ATCTTCCTCAGTGATTCTGATTGCAAAACTCAGTAACTATTGCTGTCATTTAGCCATAC--TTTGAAGATAAGAAAACTGGCCTTAATTGGAAGACCTGAGTATAATCTAGTCAACAAATCATTTATCTGGA-------ATTGA------TAATTCATAACAATATTGGTATTGTAT------------TGATGCTAAGATAGCACTGGaaattttgagaaatgaaaaaaaaatatttaaa-------------------------------------------aattgcctGGAAAGTGTAAGAGTAGGGAAAACAGAACATAGGGACCCACCAAGTGGCGTTAGTAAGTGCTTAGGTCC

a score=140684
s chr3           148330658 8934 + 160039680 [encoded data, 9805 characters]
s HiC_scaffold_1 134993040 8426 + 233722169 [encoded data, 9805 characters]

a score=136566
s chr3           148340934 6062 + 160039680 [encoded data, 6420 characters]
s HiC_scaffold_1 135002144 5684 + 233722169 [encoded data, 6420 characters]

a score=25163
s chr3           148355740 832 + 160039680 AAATGAAAAAGAATTT----------TTTTTATTTGCAAATGTCTTCACAAATGTAGTACTCAAACAGTTGGTCTACT----GTCACTTTACAGACACAGATCTT------------AATAGAACCCCATTATTAACATGTTTATATGTACATGCATTGAAGCA-TGCATA-ATGCTTCATCCTATTTAAATCTATGGTACATTTAAATAACAGTAGAGGCTCTACCAGTTTCTT---AGATGAATTCGAAGATTTATGTACAAAATGTAGTCCATTGAACTGGTTCCTTTAAAGGATATTAATGTGTGAAGTGACTTATTAAAGAATTCTTTTTTGATCCCATTCCTTTGAAGCCATTACAAAAGAAGCAGATCTTAGCAGCTGTTAGCCATTATCAAGTCAA----TGGCTTTTCATGTCAGAGACATAAACATTATTAAACATTAACCAGATCTTTGACAGTAGAACATGGCAACGTGCAACCATGTCGTTGTCTCAATCTA-GTTTCATAGTAAATTAATGATAAGGTCTGA--------GGCAAAATATTTAAGATCCCTCTCTTTTCTTACAGCTTTGGGGAGATGAATGAAGCCTATAACTCTTGAATGCTTGGCCAATCTTAGC-AGTTCTTACATCAAGTACATTCAA---------------GAGATGAGTTGTTAAACTGTGATGTTTTGACATGCTTAATGTACATGCACATGTTTAACGTGTGAGAAAACTCTCTTATA-------------------------------------------------------------AAAATTGGTATCAGATT--------CTTTTATTCAGCTATTTTAAGTGATATACAATAAGATCATC-TAAATTGAAGGAAAACAAAAAATAAAATTCAAAATATGATCATCTAAAGCTAAAGAAAAATGGGGGAAAGAAAGAAATGGAA
s HiC_scaffold_1 135015846 944 + 233722169 aaatgaaataatgtttgCGTGAAAGCTTTTCAACTGAAAAAGTCTTAGCAAgcatagtatttaa---ttttttctacttCAAACTGTGTTTCAGAAACAAGCCTTTGAATTTCCAAGAATTGAG----AATATTAATAGCCTTACATGTACA---ATTGAAAAAGTACACACATCATTCATCTCATTTAGAttgctgatacatttttaaaagagcaggatttacatatattttttgaaatatgattttGAGGATTTATCTACAAAATGTAGTCAATTGCCCTGGTTCCTCCAAAGGACATTAATGTGTGAAGAACTCTGTTTAAGAATTTCCTTTTGATCCAGTCCCTTTAAAGCCATTGCAAAAGTACCAGATCTTAGCAGCTATGAAACATTATCAGTTCAATCTGTGGCTTTTCATGTCAGATGTATAAACAGTATCAAACATTAACTGGATTTTTG--AGTCTAACATGGTAACATATGACAAATTTATTATCTCAAtctatttttcataataaatgaaTTATCAAACTTCACCATAACTGGCCAGGCATTTATAATCCTTCGGCTTTCTTACAGTTTTAAGGAG----ATAAAGAGTGAAACTATTTAATGCATGGTCACTTTCAATAAGTGCTTGTATCAGTTACATCCTACGATTATTACCTgtcaagatgaattttaaaaatatgacatacTTATGCTCTTAATATACATACATGTAATAAATGTGTGAGAAAAGTTTGTTGTATAAGATTTTATTGTAAAAGAGTATTGTGCAAGGATAGTCAGTGTGTGAGAAAGCTTCTTGTAAGAATGATAtcagaattttaaagatttttgttcAGATATCTTAGACCATACACAATAGGGATATCATTAGTTGAAGGAAAAT-AAGTGTAAATTTGAAAGAACTATCATC-AAAGATGAAAGgatgagagggagggagagagaagcaa

a score=102357
s chr3           148361475 3967 + 160039680 [encoded data, 4530 characters]
s HiC_scaffold_1 135022947 4270 + 233722169 [encoded data, 4530 characters]

a score=54567
s chr3           148367762 2617 + 160039680 TGTCACTTTTCAAATATTTATAAATGCCACT-TGTTCTTACTAAAGTGAAATGACTTGCGATGCCTCACTCTAACTGTGCCAGATAATTTCCATTTTCGTCAAAGACAGTAACTGGCCAGTAAAATGCAAAGTCGTTTTGGACTAAAGTGAGGAAGTGGTTACATGGCTCCGT-----GTTCTAGCTTGGGGTACAGGCATACCTGGAAATTACAAAGCTTCATTGGCAA------------ACACAGGCTTGTATATTGTAATTCAAAAAGTTATACGGAAAATCCTGTCATAACTGCCTCATAAAAAAATACACCGACACAAAAGATAGCAAAACTTGGAGAGATACAAGTGTTCTCTGAGATCCTGAGGTAGAGAAATAGAATCTAGAAAATTCTCTGACATGCGTAATCGTGGGCTATGTAGAAAATGCTGTAATT--TTTCTCTGCTTATGGTAATGGCTGAAACAATTTTGGAAACCTCATTGTTAGTTTATCTTCTA-GAGGAAGGCTCTTTATATCGATTCTCTTAATTATTTTTCTCAAGCGTCACAACAC--AGCTAAATTAATGGTCTCTCAGGGAAATTTGATTGAGAATTTAGTAATTTTTAGATTGACTTGGAGATTCAAGGGATAATAGCTTTATCTGGCTTATTTAGTTAAACAGTCAATTAAAGGGGAAAA--ATATCTCTAATAAATCTTTAAGTTGAGTCTGAGGTACTATTTGATGTTTTGTTTT---AATTTATGAAATTAGCT----CACTGGCCAACTATGGTTAGTGAGAAGGGGTGTTTCTTTTCTCTATCTAATGCAAAAATCCATTTTTCTCTTTAAACTACTTTCCAGTTATTCTGAGATGACCAAGATTTCCTTGAACTACATATGTTTTCCTCATGTTAAAGTAATTCTGGTATGTTTCAGCTC---TCTGTGATTCAAATAGATAAAAGCCAATTATTTTCATTCATCCTCAGGAGTCCATTGATTCAAATGCTTGAATCAAACATCCTTTTTATTTAGAATAGCCTGGCATTTCTATTAATAGAATAACTCTGAAATGTTAGAAGAGG---AACAAAGAGTAAATAGGCCCAAACTTAAA---AGTATTCTTCTTAATCATTCAAGTTATATTAGCTCAATATTAAGTCATCACAAACCTACCTTTATTTTGTTATTAATCAAATAagagggagagaaaaaagagagggactgagaggagagag---------agagaaagagatagagagagattgagacagaaaca--------tgaagagagacagagaaagagagacagaga----------------gacatggagacagaaacagagtggcagagcatacaagactgcacatatCATTTAGTCT----AGACCATGCTACCAATC--TGACAATGTCGTCATCACAGAACCATAGCACTATATATGAAGCTGAACTGTAATTCATATTAG-AACCAAAGATAAAATAATAAGGTATTAGGAAGTAAGAGAAAAAACAATAAAATAAAGCCAATGGTATAAAAAAAAGCACCATAAATAT---TCCAACTTATTCATTCATTCATTCATTAACTTGTCCAGTTACTTACACCTACAGATCTCTTTGATGAGGTTAACCTTACTATT-TCTATGGATACT---------------TAGTTTTAGTTTTCTTTGAGATTTTTTTTTTCCTCTCTCACATTCCTGCTATGCTGTCTGTAACAGATTAATTCTCAGA--TAATACAGATTCAAGATAGCCTAGCTGAAGGTTTTTTAAG-----------ACTGCATGTGTTTAAACC--AGACTGATGATGGGAAATCCAGTATGCAGGATAGCAGTATTTAGAGACTAGAATAGGATTTGGGCAATAGGATGTCATCATGAGAGTTGCAGGAA----GGAACCACTGCTGCCTGCATATATTTGCTTCTGAATTCAACTCTTATAATGCAAATCTGTGATATTCGTTCCTTTG---------AGAGTAAGTGAAGATTGAAGCACACACTTTGTGCCATAGCTTCTTGTGTC-CAGATGCTGCGGACTCAGACCTCTCAGATTCCTGTCCTGAAA----TGTTTCCCATTTCACACTGAGGCACCAAAAAGTAGGTGCTCCATTGTGTTCTATTACTGGGAAAACCTACAGGCATTCATCTTTGATTACAGAAGGTGATGTGTGAGAGTTTAGGGGAAACCGGTTTCTGAGAAATGAGACTAGCTTGCCCTTCATAAGGTGTATGGCTCCCCACAGATAGCCTAGTGCATTATTTAGAGTTTCCAGCATCTCTCTGCAGGGGATTGTGCTTATACCTGGGCAG-GAAGATGAAGCTAGCTGGCCGAAGTCAGGTTGCACAGACTGATCCTGCCCCTCTCTAGAGAAA-CAGATCATATACTACCTACAGACAAACCAAAACA-TTGTTGAAC-ATTCCTGTTTGGCATCTTAAAATTAGATTTTTAACT--------TTATAGATGAAACTGGAGAAACTTTATTTTTCTGATCTGAAAAAGTCTTTGGGGAAAGAATTCTTGGTGTGCTGTGAGCTATGCTGTACAATCAGAAACACACATTTCTACAATACCATGGATG--------------------TCAGGTTGAGCTCGGGGACTCATCA--AAGTTTTCTTGTTTCTTCAGATAGATTCTCTATTTAGGAGTAAATTCAATGGTGATGGAAATGACCAGTTAGCCAATAAACACCAATTTCATACCAGCTGA
s HiC_scaffold_1 135030675 2607 + 233722169 tgttattttacaaatattcattaattccattctgtttttattaaaatgac----ttttaaatgcCTAATTTTAaccaatgaaaattattttcatcattcaTATTGCCAGGAAACAGCCAATTAAAT------TTATTCTGGATGAAATCAT---ACTGACT-CTTAGTTCTGTTCAGGGTTCAATCTTTAACTATAAGATCACTAGTGAGTTACTAAATTTCAATGGTAAGATCGCTAaccaaaatggatttttaaagttGAATACTAAAAATTTCATGGAAAATTGTGTATGTTCCATATCACAAGAAAAT----TGACAGAGAGTGTAACATG--TTTGAGAGAGAGAGGTATATTCTGAGATTCTGAGACAGAGTAA-AGGATCTAGAACA----ATGAAATTCAAGCCATTGTGTTAGGAACAAAACTCCTTGAACAATTTCCCTGCTTAACAGAATGATTGAAATCATTTTAGATAT-------GCAATATGTCTTTTATGAAAAAGCCTTTTTGTATTGATCCTCTTA--------TTTCAAACACCATACCACCCATTAAAATTAATGGTCTC--AGGGAAATTTGATTGAGAATTTAGTAATCT--GAGTTGATTTAGAGACTGAAAGGCTAATAGTTTTATTTGGTTAACTTAGTCAAGCA-TCaattcaatggaaaaataaagctttttagAAATCTCTAAGTTCAGTCAAACTGACACTTTGATGTTcagtttataaaatatatgtagttAACTAGTTCACTGGCCAACTGTGGTAGATGTAGGGga----ctattttttctgtttaatgtaaaattttattttgatatttaaaacacTTTCCTGTTACTCTGatat--------------tgaatt------------------tcaaagaaattctGGTATGTT-CAGCTTATTTTTTGGATCCAGATATAAGAcagc-atttattttcatttatcttcagGAATCCATTGATTCTAACGCTTGCAGGAAGCACTCCTTT-ATTTGCAGGTTCTTGATATGCCTAACGATAATCTGATTGTGAGatactgtaaaaattttaaaatggattaaatagGCCAtaagttaaatttattattattctaaaaCCCCCAGCTGACACTGCCTGAACActacattatta-----------ttaatttaattttaaccaTACAAGGG-------AAAAAGTGAAGGA------GAACAGAGCTCCTGCTCATGTCACTTATTCAAGAGAGTTTGTGACTGGATTACAGTTTCCTGTGAATCTACCAAT-------GCcaatggcttttcttttcttttggtactggagatcgaactcatgactgtgagTTTGCAAGGCCG------GCGCTTAAACCTGCaggactaaatccccagcccctaccaatGGCTTTTCTACAGATCC----CATAATTAATCTAAGAGCAATGCAAATGATTCCTGCAATCAAAGATAAAATCTTTGAGTACTAGAAATTAAGAATAAGGA-AATAGA-CAAAACTGATTgcataaaacaaa--atcataacTATCGCtttaattaatttcaaaattatttaattaaggTAG-----TATTTGCACAATGTAATTCCTCTGCTGAGTGTAACATCACAACTCTCTGAATATACTCTAAAATTTTacacataaatttctttttctttgatgttaGCTT--------CTAATCTTTGTGCTATACTGTCTACC-CTGGCTATTTGCTAAAACCTGCATAGAGTCCAGACAgcctatgaaaatatttattaagtattatCACtgactgaatgtttgtgtccccaAAATTCACATATTGAAACCTGCTCCCCGGTGTAATGGTATTTGTAGGTAAGGC-------------ATAATCCATCATCATTGTAAATACAAAAGACATGCAGTCACTACATTCTGCATTCACCAGATCCTCAATTCAACCCTCACAAAGAAAAATTGT-ATGTACATTTCCGTGGAGACAGACAATACAAGTAAAAACTGAGACACACACCTTATGACAGAGTCTTATAGGCCATGAATGCTGCACACAGAGACCTTTTGAATCCCTACTCTGGAAACTTTGTTTTGCAT----AAGGGAAACATCAGAACCTAGGTGCTgcattgggttcaatccctgtgAAAATCTTTAGGCAGTCATTTTTGATTACAGAAGTTGATGTGTGAATGTTTAGGGGAAACTGGTTTCTAAGAAATGAAACTCACTTGCCTTTCATATGGTGTGTGGCTCCCCACAGATATTCTGGTGCATTATTTAGAGTTTCTAGCCTCTCTCTGCAGGCGACTGTGCTTAAACTTGGGCAGTGCAGATAAAGCTCACTGGCAGAAGTCAGGTTTCACAGTCTGAC----CACCTCTCTGGAGGAACCAAATC--AAGCCAGCCACAGAAAAACCAAAATAGCTATAGAACAAtttctttttgacattttaaaaatatattttttacttcttcttcttcttcttctaactgaagaaactttatttttctggtcAGATAAAATATTTAGGGGAAGAATTCTCAATGTACGATAAACTAAAATGAACAATGGAAGGTAATCATTTCTATATCACCAAGTATGTTTACTTACATCAACATCTTTTAAAGTCAGCTTGAAGACTTTTTGATAAGTATCACTGCTTCTTGAGAAAGATAATCTTTCT--------ATACAAGCTTCATAACAACA--CAATTAGCCAATAATTATTGATTTAGCACCTGTTGA

a score=10757
s chr3           148375741 451 + 160039680 TCTCTATTatacatagaagaagaaggcattgcacaaaagcacagtgagatgacagccttccacaagccaaggcaaaggacctcagaatgga-taatgccttcctgacccgttgatcttaatcttcaatattaatgactgcagggaataaattctgattgttgaatgcactttatg---ttttgttaaggaagttactgctgac----acactaatataTCTCACATTTT-GCAACAATTATAAGCCCTTCTTTCACATTGAA-TTTCTTTTCAAGAT-AGAATGAGAATCTAAGAACAAA-----TCCCACAAACAGCAGGAATCTTCTAAATGCTAACCATAGGCCAGGCAAATTAGATACACACATGTAAAGTTATCAGAGTCCTAATTACTTCAAATAATTAATTATGCATAGTAATGTTGAAAACTATGCTAAGATGTACA-GGAGGTCAGTGAATCATAAGTT
s HiC_scaffold_1 135037586 427 + 233722169 TTTCTGTTccacattcaaaaaaaaaaaatc-cataagcACAAAATAAGTTG--------CCACAAGCAAAGA-----GACCTCACAATGAAATCACGATATCTTGAAC------TTCCAGCCttca-taaaaatga------gaaataaattcctattaaAACACATAGtctatgatattttgttatggtaGCCTGCACTGATTAGTACATTA-CACATCCCACATTTTTACAGGGAAATAAAGCCCCGGTTTCACATTTAAGTTTATTttcaacatcaaaaataaaatctaaaaataaaccgGATCTAATAAACAGTAGTAATCTTCTGAGTGCTAAC------------AAATTGAGTAAGTACCTATAA-GTTATCAGAGTCCTAATTACTTCTAACACCTAATTATGAATATTAATGCTGAAAGCTATTCCAAGATGTGCATATAAATTAGTAGATCATGGATT

a score=79130
s chr3           148383778 5681 + 160039680 [encoded data, 6251 characters]
s HiC_scaffold_1 135043743 5651 + 233722169 [encoded data, 6251 characters]

a score=136594
s chr3           148394471 6160 + 160039680 [encoded data, 6744 characters]
s HiC_scaffold_1 135063074 6020 + 233722169 [encoded data, 6744 characters]

a score=52375
s chr3           148403354 1861 + 160039680 TGATGACAAGCCT---------ACCAGCAAGGATGGTT-TCTTTAGCCACAGATGATCTTCCAAAATAATTTTGGGACTTTGGGTGTGA---ATATGGACATGACTACTTTTTAAAGGAGCTCTTTATTCTCAGCCTCAATAATTCATATGTACGAGAGCTGACTGTGGTGAGACCAGGGAAGTTTGTAGACTCTGAGGATTCAGTGATGAGCACTGGGTGATTACGGCATTAAATTATTATTCAGCACCCCTATATTTCATGCTTTTT--AAAAATGCAGCAGTAATCCATTTAAAAATTTTCTAGCAAGGTGATAAGAACAGCATCCTGAGTTGACTCTGGCATCACTAAATTATGCATTACTAAATGTTTTTTAATTGTCAATTACTTCAATCTCAGGCTTGGTCCTTTCACCCACTTTCAAGGTGACTTCTCTTTGTTTCTGTTTTAATACCTATAAATCAAAGTAGGAGCTGCTGAAATGATACTTACTGTCTACTTGCGAAAGGTCTTCTGATGATTAGTGGGTTAATAGCTGTATGAACATTGCAGTAATTGCATATCAAGCAGGAGAAAAACTTCAGAAGCCTCATGCTTTCCTGAGGAATCTTTCCACGGTCTTGTTTGTGTGTGTGTTGGGGGGGGGGGGGGTTCTTTGTCAAACATGGGAATATATTAGCACTCTTTAGTCCTCTCGTGATATGCTGTCCTCAATGAGTTTTCAAAAGTATTCACTAAAC-TGGAGCTTTTTGTTACTTCCTGCAGAATTCCAGTGAATAACACATTTAAACTAATGCTCTGTCAAATTT-AATAGTCGTAATTGCCTAATTATCTGCTCTAGTGTGATGGTAAAGCCTTTTAACATCTTGCTTTCCCCTAAGGAGAATGAATATATTTTCTAGAATACCACCTTTCTCTTCTTTGGAGAATACCCAAGCAAATAATTCATTTTACTCTCGCCTCAACAGATACCATTTTGGTGCCCTTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGTTTAAGTTTGATTTGGTTTTACTCTATCTGTACCCCTCTTGGCCTCAGATATATGAACATTTTTCAATGG-TAATAATCACATGTATGAAGCAATATGGATAGTTGTGTACTGACTTTCTTAATTGAATTTATAGCATTCCTTTCTAACATATCATTT----CATTTACATTACTTGATAGTACTTCTCTAGAAATATGCCTTTCATGTTCTTGATACTGGACACTATCCTTGATTCACTTCTGAAGATCTGTATCAATTC--ACTGTGTGATC-ATTCACCA-CACAACCAGATAACCTTGGCGTTAAGATGAATAATTTTCTAGTTTAGCTGGTTCTTATCTGCTTGCTTTGATTTTTATGCAACTTTAGCCTCCTGAACT------CTACCTTAATG-----------TACATATTATCTTTACTTTTTTTTTCCTCT---TTT-------GCCTTTGAACTTGATCTTTCAATATTAACCCACCTACTTGGGGGTCC----TGTGGGCTGTGCATCTTAATAAGACTCACACGTGATTAATGCAAAGATGCCAGCATGCACCAGG--TCATA--------CAGGTCATAACACAGAAAGCTATTTGGACTCATCTA--TAAGCCAGAAATAGTGACAGGTGAACCCAAAT-GAAGTAGAA--TCTGCTGCACTTCAGTGTTCTCCACTGAGAAGAAGGGCATTTAAATAATAGATTTGCCCA------GTCTTCCAGTATATAACCCTAATAACAGAAAATACCTCCAAATTATTTTTGAAAGCTTTTTGATGGTTTGAGCCTA-TAAAAGCCACTTGCTGAAAGAATCAAACTTGGACCCCAAATCTAGACCACTGAGGTCATATTCTGCTACATATTCTCAAATGTAAAGTTTTAGAAT
s HiC_scaffold_1 135072270 1805 + 233722169 TGATGATAAGTCTGAGCATAACACCACCAAAAGCAGCTATCTTTAGAAATACACTAT--------------TTGAGGCTTCTGATGTAATGCACATGGATGTGACTATTGCTTTAAAAATCCTTTGA------GCATCAATCATTCATAGATACACTAGCAAA---------GACCTATGAAACTTG--GAACTTGTGAAATAAATTATAAGCACTGTGTT------GTACTAAATTATTATTCAGTGTcacaaattttcatgtttttttaaaaaatgtatcaacAATACATTTAAGGATTTTATAGCAAGATGATAAGGGTACTATACTAAGTTGACTTTGGTGCCACTAAATTAttcatttctaaatgtttgaTAATTGTCAATTACTTCAGTACTAGGCTTGATCTTTTAATCAGCTTTCAAGgtgacttccttttgtttctgttttaatatctataaATCAAAGCAGGAAGCAGTGAATTGATACTTGTTATGTACTTTGGAAAGGTCTTTTGATGATTGGTAGGTTACTGTCTATACATTTATTACAATAATTGcatataaaagaggaaaagggcTCCAgga--ctcgtg---------------------------tgtgtgtgtgtgtgtgtgtgtgtg-----------tgtgtaatctggAAATATGTTAGCACCTTTCAGCTGTCTGGTGAAATGCTGTCCTCAATGAGTCATCATAAGAATTCACTAAAAATGGTGCAATTTGTTATTTCCTTCATAATTTTAGTGAGTAATGCATTTAAACTAATACTCTGTCAAATTTTAATAGCTGTAATTGCCTAATTATCTGCTCTAGTGTAATGGTAAAGCCTTGTAA-ATCTCGGTTTCCCCTAAGGAAAATGCATTCAGTTTTTAGACTActacctttcctttctttggagAACATTCAAGCAAATAATTCACTTCACTCTCAGCTAAGTAAATATCATT------CCCTTATTCAATAActggat---------------------------tttttgtattttgttttgttttcagtct-cCAGTTTCTTTTTAGGTCTCAGATACATAAACCTTTCTAAGTGATTAGCtttcttattcataaaat-------attgttGTTCCTTGGCCTTGTTGGCTAGTTTAAAAACATTCGTTTTCCACGAATCCTTTTTTGTCTGTGCTTTACTCAATATTTTATGTCTAcaaatatctttttcatttttataataattaacACTTCCCTTATTCAACTTCTGAGGATTTGCATTGTTTCATACAATACAATTAATTAACCAGCATAACCAGATAACCTT-TCATTATGATAA--AGTTTTTTATATGAGTTGATTTTTATCTGTGGGCTTTGATTTCTATACAATTTCCATTTAGTGAACTCATTAGCTGACTCTGTGTTGTATGTTGTTATATGTTGTCATGATATTTTTTTACCTCTGACTTTAAAACAGGCATATGAATTGGTTCTTTTAATAC---CCAGTCCACTTGGGGATTTCATGTGTTAGCTGC-CACCATGATAGGAAATacaactgatttaaaaaaagatgccAGCACTCACAGAGAATCTTAGAACTTCTCAGTGAAAGGTACAGGAAACTATAGAGAAAAattcaacaaagccaaaaatagaAAAGGGTGTGGGGAAGCAGGATTAGAACTTCTCTAATACTACAAAAATCTCCTTTCAGCAGTA-ATCACTCTGACAAGATCTTCCCCTAACCCTCATCTTCTAGCAAAAGGC---AGAGGGAGAAAACAACTCCAAATATTCTCAAACAATTTTCCTACA--TTGAGTGAAGCAAAGGTCTGTGGCTGAGAGAATTATAGTTAGGTCCAAAGTTCAGACC---TATTTCAGATGCttcaatttgtcttttattttatatctttggaat

a score=52734
s chr3           148407514 2530 + 160039680 TATCTCCACCATTTCCTAACACTGGTGATGGCTTCCTTCTAAATATCTGTTGCATCCCTGAACTTTTCTTCATCTCCATGGATATCAATGTTGCTGAAGCTGCTAGGAAATCATAACAGACAAA--ACCCTGGTTTCTCAGCTTTCCATGTGCCAACCAGTCTGCCTAGTCCTTTCTCCAGCTCATTCTCCCCAAACTGGTGTGGTCTGGGA--GGTAAAA-------------TTCCTT--CTAAAAC--------TGTATTCTCCTGGTCTGACATAGTGGTCC-----CTTTGAGTAATCTCAGTTCCAGTAAAATCCCCT-------------------ACTTTCCCTTAC----------ATATAACAAGTGTTCCTCAGAGTTACTCCCAA---CCTTCTTGCCTCAGTGACTTGCCTCTCTCT--TTGGGAAGCTTTCTTGGTTCCTTCACGCTGGCTCCTACCCAACTCAACCTTATTTAGCTTTTTCTGAGATTAACCCAAAACTCACATCTTCAGAAAACCCCA--TTTCTGCCCGATTATATC----------------TTCTCTCTTTCCCAATCTTTCCCCCACTTTCTCTGCAATGCA---------CTTATATGTGTGTGTATCTCTGGAAGGGTTTTCATTTCCA-----CCAGAAGATTATTGCATATACTTAGCTCACTGCTTTCCCTCTGGTTGCTGTA-TCTCCATTGCCAGCCTAGTACAGAT----------TAATTAATAACT----GGACT----AACATAAGCTAAGCAG-------AGCCTTTCCTCATCTTTATCTATC-ACTGGCTCCCAATACCTGACAAAAT-ATGGGTGATTTTTTT---------------CTG-CTTAATGCTTGTTATTCAGAAAATTGACAAGAGATCATTAACTGTGCCCATCTGAGCCACAGTGTAG-TGATGACA-TGTCTCTGCGAAAGTGAGATTATCA---------CATTAAGATAACCAGCAGAGC-------TTAGGGCAAGGAATCTAGTATAACTTCTAA------------TAATTTTTGTGTCTTTCAAGTGCAAGTTTTGGG-TGCCAATAGCCTGTACTTAGAAATTCAACAGTGCTCAAAGTCTAGGCAAATAGCCTGAGATGTGTCTTGTACCTGACAAAAAAACCCAGCTTCTGC--CGTGTTATCAAGAGGTCAAGAAAGGGCCCATATAGAAATATAGTG-CAATTTCCTTGTGTAAAAGGGCATCAGAGATAAGTCTCCTAGAATTCAACAAGTCATTCCTACTGTTGAGAATGG---------------------------------AGACAATTCTGAAATATTCAAAGTGGCTTCTTAAACATTGATAGTAACAA--ACCTTTACAGTA-----------AGAAACCAAGAATTTTTTCATTAATTAG----GCTAGA-----TTTGAATGGATACTGGTATATTCCAAAGCATAAACT------------------ACCAGGAAGCCTATGAAAAGATGATGTAGATGACAGAACTGGTCTTCCTCATAT--CCACTGTAGGATGAAGGCCCCCATGTttttgtttgtttgtttgatgttttttgtttttttgtttttttgtttttttagtttttgtttTGTTTTTTAACAGAAGCTCAATATC-ATTTCCTGCCTAGCCCAGCCATG------AGCACTT---ATTAATATCTTGGTTTAAAGT--GCTTAGTATTTCTGTGTTTACATTCATCAGGCTAACTTCCAAATTGTT--AATCAAGG-----GTGATAGACAGCATGGTAGGGTGAGAAGAATCTTTATTTCTGAGCCTTATCTTAATCAATATATTCTCATTTTAAATCCACAAACTGATGTAAAAAAATATCTGAACATGTTTAATTATATCAATTAAATATTTAGCTTGACATTGTCAACAGGAAATGGAACACTTGCATAGAAATAAGCATTGCTACTTTTACTACTCTATGCAGTTTAGTGTTCTACAGTTCAACTTCTTAG---GTCTCATACCATACCAAATAACTCTGGAGATATTGCCAAGCCCAGCTACCCTTAATGGAACTGGGAAAGGGCACACGCCTAGCTTGCATTCTTTATTTTCTTTCTTACAGTGAAATCTAATCTCAGAGTTCTTTTTATCAGTGTTTGTTGAGATACACATGAAAGGACTTACTGGTGTGTAT--ATTTCTGCCATCAGTTGTCAG-------TTAAGCATCTAACGAATGCCTG-AACTTCTCTGCATTGACTCAGAAAACACACATGCATTGTTTATAAACACA-TCTCCCCCGTCTGCTGCCGTTGTCACATCTCTGTTTTAAACTATGGAGGGAGATTAGAGCTGTGTGGGTGGAGTAGTATCTGCAACGGTTATCTACCTACAGGCTGCAATATATCACCCATGTCTCCAG-GGATCTAA-TCACTAATTGCTTCTCCAGAGATATACAGGTGGCCACTTGCCTTTCACCTCCTGTCATGAATTACCCACCAA---GAGCTTTAAAAATGGTTTCAAAGGCATGGGAAGAAAGCCAGGGAGAAACATTTATAGGAGCTGGAGTCCAAGCTTGCTGGTAAACACTCAAGTCACAG----AGCTGC----------TGC---------TTCTCTGAAGGTTGAGG-GGACTGATGAA-AAAGTGGCTCCATAAGAGCCCGAAGAAGCTGCCCCATTCCTGCTTAATCGCAT----AGATGGTTCCATTCATTAATATGTGTGTGCATATATGTCAGGTTTTCCTTTAATCACTTGAAAATGTTCTTTG
s HiC_scaffold_1 135078865 2712 + 233722169 TACCCATACTATCATATAATACTTTTGATTTGCTTCTTCTAAGTATTTTCAAcatccattttcttctctttatcccTATTATTATCGTCTTTGTCTAAGCTATAATCAAGTCATATCTGAAGAACAGCAACAACCTCTTAGTCTTT----TGTTACCCACACTAcc-----ccttttctattttattttcc--aacttGGGGTgatttcaaacaaataaaaagcatcttttgTTTCCCTTGTTTAAAACATTTGAGCTGCAT-CTACTGGCATAGCCTACCAGCCCTAAGCCTATG-----CCTCAGCCCC-GCATAGCTCTCTCACCGCGCCATCCACCCGCACCTCCTCTTGCTCTGCTGTGTATTTACGCTCAGTTCATCAG---TGGTCCCAGGCCCCTCCTTACT--AATAGCTTGCTTTCCTCTGCTTGGCAGGCTGTCTTggttctccttctctcccttctacCTAA----ATCCTAATCCGCCTT--CAGAGTTTAGCTTAAACCAAACATCCTCAAAAAAGCCTGAGCTTCTGCCAGATTCAATCAGACCCCTTCAtgcttcttcccttttttcaaaCTCCTATATGCTTCTTTCATAGGACAgagcccatatttatttatttatgcctttttgattaatttgtcttttctatttGACCAGAAGCTCATTAAATCTGCT-AGCTTTCTGCTTCCTTC----TTGCTATAGTTTCTGCTGCTGGTATATCATAGATATCAAAGAGCTACTGAataaattcatggactgaagaaTATAAGCTAAGCTGTCAACTTCACCATTCCTC--TTTTATCCATTTCCTATCCCATGATACTTGGCTTGATTCttggtggtttgtttgtttgtttgtcatttctgtctttggttttatttttcagataggAGAAAACAGAGCAGAGATTCAGAA-ATTTGAACCACGCTgtgggtgatgaaaatgtttttgcATAAGTAAGATCTACAGGCAGTTGTAATAATGATCGCTATTAAAGCAAACAGATTAAAATAAGGAATTTACTTTGGTTTTTAAAGCTAAACTTTCTCGCTTTTCCATTTTGCACATGCTGCTTTTGGAACACAAATAACCCAGA-TGAGA----CCACAGTGCTCAACGCATAAACAGATTGCCTAGACTCTCCTCTGAACTAGACAGAAAGGCA-GGCATTTGCTTCCTATTTTCAAAATGTCAAGGAAAAATCCAAAAAGGAAGATAGAGATAAGTTTTTCCTGCATAGATGGTTCTGGGATCAGTCTGCAAGGAACCAGAAGGTCAGCCTGGCCATTGAGAGTGGGATCAGCAATGCAGAAGGAGGTTTCTTTGCAGGAGCCAATTCTGAGCTATTAGGAGTGCCTTCTTAGA-ATCTATATTGACAAGGATTCTGACACCATATCTCAGCCAAAGAGCCAAGAGCGATGTCATCAATTAGTGATGCCAGACAGGCTTTGACTGGGTACCAGTACAGTGAGAGCTACACATTTGCTTGCACTTGTCAGAGACCAGAAAGGTGATAGGAAGATGGGGTGGAGGATGGGATTAGTATTCCTCTCATTACCATTATAGGATTAAGAAATGCATTTCTTTGG---------------------------------------------------------------AATAGGAGCCCGATATCTGTTACTTACGTGGGCCAGACATGCTGTCCATCATTCTTGATTAACAATTTGG----AAGTTGGCCTGAGAACTACAGATATA------------GAAATGCTAAGTGGTTTCAACCAAGATATTTATGAGAGCT--CATGACAAGTATAGAagaatttttattccaaaacctTATCTTAATCAATATAGCCTCATTTTAAATTCACAACCTGTGATGTAAAAATACCTTAACATGTTTAATAAGATCAATTAAATATTTAGCTTGACATTGTCAACAGGAAATGGAACATTTGCATAGAAATAAGCACTCCTGCTTTTACTATCCTAAGTAATACGCTTCTCTGCAGTTCAATTTTCTGGCCTCTCTTATGCCACAGTAAATGTCTCTGGAGATAATGTCAAGCATGGCTGCCCTTAGGGGAAGGTGAAAAGTGAGGATGCCTACtctgcattatttat----ttttttattgtgaaatcTAAACTCAGAGTTC--TTTATTAGCATTTGTTAAAATGTACATTAAAGGGCTTACAGAGATTTATCAACTTGCACCATTAGTTGTGAGTGTGATATTAAGTGTCTAATGAATGCCTGCAGATTCTCTGT-TCAACTCAGAAAACACACATATATTgcttataaacacattttctccCATCTGCTGCTGTTGTCTTACCTTTGCTTTCAAACATGTAAGTTGATTAGAGTTGTGTGGGTGGGGTAATATCTGCCATGCTGCACCACCTACAGGCTGTAATATATCACCCGCGACTCTGGAGGATCTAACTCACTAATTACTTCTGCAGAAATGTATCAGAGGTCACTTGCCTGCCACCCTTCGTCATTACTTACCCACCAACAGGAGCTTT-AAAATGGTTCTAAAGTTAGGAGGAGAAAATgagcaagaaatattttgaaaacctggAG-CTAAGCTGATCAGGAAGAACTCAACTCACAAATATAGCTGCATACAGTGAATGCCACAAGTCATTATTTGAAAAATGGGGAGAACAGATGAacggggaggagggagaggaggatgacaaggtttttctgtctcctcctAGGAGCATATACAAATTgatccatttgtttaaaaaagaat--atgtatgCTGGGTCTCTTTTTAATCATTTGTAAATTTGCCATG

a score=49878
s chr3           148415907 3263 + 160039680 tgtgatcttcctgaaaccttaacaag-gattctacaatccccttcctaattttcatttttaaatcat--ttttctggcactgactttaacctgatccatg---atagtgcctccgtttctactattattctctatatagaagagttcagggttttctgataacatcaagctctgatgccttccatttaattaaccattcctaatagtttattcctttcctctctcctattaccataaacagcaagaagaaaccagttcgattttacaggactttgtccagaaaaaaatcttcgctagatcagcgggtttatta-ggaacatcttctactttccacgtcagtgcaggcaataacctgctgaacgttccgtcattgcagacccaggccttccccagtgtctcttaatacttcatttaca-gctcttcaaAGAGGGTCACGTTTCAGGAAACCTTTTTACAAGGCTCTCTCTTAAGACCTGTCCGTTTCCACTCTGTACCTATAACCTGCTTCCAATGCCATTCCCATATTTGGGGTGCTGGCTGCAGACAGAAGTT-ATTGCCAACTATGAAATTTTACATTACTttattattggttcttaacaatttatgttaaaattggggatcttgggagaccaaaatctt-ttaactgtatgatttctgcaggccaggaagaaaagaaacaagttgtcttctacgcggttctgagtccagttgccttatgaatttgctatgaagttgttgcccagtgtgaataattttggaagtttgacggtggattcacactttgctccacgatgggatcaatcatgctacagtgatcaggaaacc-tcgtttcctgcctggctgtttgcaaaaagggtgcccattc-tctctgcacagttcttcgctgcaagtggcaggcttctgcagaatatgtgatgcaagaaagagaattacagaagccacaggacattttGAAAAATTATTTTAGttcattcattcattcattcattcattcgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgttatgtgtgtgttatgtgtgtgtAAAtacctgacaagaccagaattgaatccctgggtctggagttaaaggttgttgtggaccacctaacataggggctgagaattaaacgcaatcctttgctaatacaaacttccaaccattgagctatgtctccagccccATCCATGGGTTTTTCATAAGATAGTCTGAGGTAGGCTGATCAGGGACATGCTACCTGAAGTATTACATTTGTTATAGCAAGCAGTCTTAACAAATTGTTGCGGGGGTGGGGGGTG---GGGGGGGTGACAGTATACTCTGTAAAACATTGTGGAATATCCTCATGGGGACAGATTCTTCCATAAATATCGAATTAATGATTTTT--TTATTTGTGTGTCATTTCTCACTATTACCAATTTTTGGAGATACTTAAATGTAAATATTAACAAGGGCaaatataaaaaacattaatataattttaCACACATGTAAATAACATAGAACATCAATGTTGCTAATATGAAATGGTGAATATTTTTCTCTTATTGTTTGCTTTTCTGTTAATCTAAATACTAAA-AACTTAAACTTAGACATCTGGCTTATGTTATATTAGTATTGGATTATATTAACTGAAGTTACCAAAAAACCCAGCAAAACAAAACAAACAAAAGGAAAACAGATGAGAAGAGAAGAGGCAGAAGTCAGATGGCAGATGGGGAAGCACCAAGACTCT-----CATTTCAGAG--TTTATGTCTCTTCTATAAGTAGCAAAAAGACATTGAGGTTTTGACTTAAGAAGTGGCATTATCCGAGATGTGGCAGGGC-TGATTGTATCTAACAGCAGGGAGTCTGATAGATTAGATTGAATAA-CACTGAAGAAAGATCCAGAAGCCTGAATTATGCAAGGATTGAGCTCAAAAGCAAAATCAAGACAGGAGAATGAAAACCTATGGCCTCGTCTCCTTATGGGTCATAGTTGCGCA----------GTTGA------TAAGAGCAC--TTGCTGACTGGGGGCAGGGG-----------------CAGAAAGTCCAGCAGAGTGAAGACCAGATACAAGAGAAGGG-------AGTAGTCGGAGTTGGCGGAGAACTTGACACCTGACAGCAAGTTAGATTGTTTTTTTTTTTTTTTTTTTCTTCTAAGGGGTGGTAATTCCAGGTTTGAGATTTGGTCCCTGCTTCGGGGAAGCTCTGGAGCAATAAAACAGCATCCTTGAGCAACAACTCCCCC-------GTGTGCCTTTCCCCCTCCACCTGGAAGCCACTGCCTTTAAAACAATACCTCTTTGTATTCTCAGGTGGCACCCTCCTCCAGATGGAGTAGTGGGCAGAGCTCTA--ATTAAGATATCTTGTT-----------TTTTCATCC--------------------------------------TCTGCCAGCTCC--GATCTTGTGTCACGCTTCTGGGACGGAGGTGGTTGTAG-ATAAGCAGTTTTGGTGTCATCCAGAGCTGTGGTCTGAATGTTTACGATGTGTAGCTGTGGAGGAGGGAGAGAAAGGAACAGCTGGCTTTATTCAGTTGAGACTGAAAAGGCTTTTAATGAAAAGTTTAAATTACTCTATCATCTTGGGGAAAATGCTCTGTCAGTAGCCTCTCAAATGATGGACTCGGTCTCATTTATAGTTATGGAAAATATAATTCTTAAAGTTTTAACACACAGTTTCAAGTAGCTTTTTCTGTTGTGTTAGATAGACCCC--CCCCCCTTTTTTTTTATTTTTCCTAAAAAGAGTTTTATGCTATGTTATATCAGACACTGGGATAAGTCTGGGAG------TTTTGTAAGATTTAGTGTTAAAGATATAAACTGTTTTGTTGAAAGCAGTGAACACTTTCTAATACCAAAATTACAGCAAAAAGGACAGTGAAGCACAGCAGTGACAGGCACAGGATCTGCTAACTGTTTTTCCAG-----TTGCTGTAACCTGAAGTTCT-----GCAATAGTTGTGTCTAAGCTTAGAAACAGAACCAAGAGAGGAAAAGTCCTTTTCAGTTTGATGTCATTTTCTTCTGTAATGTCTGCTGTAATTTGAAAGTTGTATTTGCCAAGAGAATTTGTTTTTGTGCCCACTCATAATTGGAACAACTTCAACACTTCTTGTAAGACGCAGAAGAGCCTTACTCACTGCGCAGTTAAGACATGCTCACCTGACGGTAT---------GCTGAATGAATATTCTCCCATCGATACAAAGTCACATTTTTGATCAAGTAATATTCATAGGTTAATTATATCCTATTAGTAGACATATCATAAAATATGTGTCATGATTCTGAGAGATATGAGAAATCATGATACAA
s HiC_scaffold_1 135103853 2901 + 233722169 TATCATCTTTCTGAGTTCTTATCAAGAGATTTTACAGTCCCACCCATGACTT-CATGTTTGAGTCATGTTTTCCTAGCA-TGCCTTAGGTTTGATCTTTGCCCATTAAATCTTAATTTGGA-TATCATTCTCCCT-TAGAAAGGCTAAG---TTTGCCAAACTTTCAAGTTCTGAGTCTctccttttaaaaagtcatttctg-tagtttatctctt----ctttcatttcactA-AAAGAGCAGGAAGAAACCATTTGGTCTCTTTCTTACTTTGCCCC----CAGATCACACCTGAATCACCTAGTTTATTAAggaacattttcaactttc-atgtTA-------CTAtaatttcctggaattt---tcctttcataatgaAGTTTTCTGCTGTCTCCCTTCATTCTTCATTCACAAGATCTTCAAAGGATATCATGTTTCTGAAAACAGAGTTATAAGA------------ACCTCCCAGCTTCCATCC-------ATTGCTTAGTTCTAAAACCACTCCTGTATTTACGACGTTTG-TAAAAATAGCATCCCATTGCCAAGCACTCAAATAGGCACCAGCTTAAAATTGCCTTGCAACAAATTACTTCAAAAATTTGTATCTTAAGATAACAAACACTTATTATCTACATAGTTTCTGAGAGCCAGGAATATTGGTGCTGATTTGT----TGTGCTGTTCTGATTCCGACTATCTCATGAATTTGCAGTAAAGCTGTCCACCATGATGGACAATTTT----------------------------CTCCACAAAGGGttcagatatgcaggttttagcAGGAGATCGTAGTTCCCCTCCCTGCTTTTTGGCACAAAGCCTCAGATCCCTCTCTAT--------------------GTGGGCCTCTAA-----------------------------------------------------------TTAGGCCGTACTCTCTCCCTTCCGTTCAC-----------------------------------------------------------------AGCAGCTGTCT-TCCCAGAAT-------------------------------------------AAATGATGGAAGGGGGTTAAAGGCAG--------------AAACTTCAA---------------------------------GTCTTTTATAATCTAGTTTAAGA----------AGTGACATGGCATATCCCATATTCC---------------TGATCCTGATACAGTGT-----GGGAAGAGGTTACACAAGGGTGTGA----ATACTCA--CAGATATTCATGAGGGTCATCTTGGAAGCAAGCTAC-CAAGAAAGCACATAACAATAATTTGTACTTAGTTGTGTGG------TTCGTGTCACCTATTTGCAATGATAtttaagtataaatat----------aaattta------------------tcacatatatattaataaaata-------aacattgtcAATAAG------------CCCTTCtatttatgttca-ttttctttaaagatacCTATTAAATAAATTAAGCTCATGTATCTT-------TTATATTTGTAT----------------GAGTTAG-AAATGTTctagaattaaaaaggaaaagaaagggaaa----ggaaaagatgagAGGGCAAAAATGGAAGACAAATCATGAATCACCTTAATTCTTGGATCCTTTTAGAGACTTTAGATCTGTTCTCTAAGCAATCAGGAGCC-TTGAGGTTTTGAGCTGGGAAGTGGCATTATCAGAGATGTGCTTTGGTGTGATTGGATCCAACAGCAGGGAGTTAGATGGATCAGATGGAGGAAACATTGAAGAAAGATCCAGAGGAGTGAATGCAGAAAGCAT-GAACCTGAAGGAAAAAGCAGgataagagaatgaaaaagtCTGGAGTCA-CTTCTCAGAGATGATAGTTGCAGGCTTGCTTAGGGTTGAGTCCTTTAAGGGCACAATGCCagattcttgaaaaaaaaattttttttttttttttagaaagtcaAGCAGGGTAGACaccagaagaaaggaaaggattccTACAGAACACGGAGGAGGCACAAAATGGAACAGC------------ACATGggttttctgctgtctttttt------agggGTTCTAAT-CTGAATTCTAGATTTCATTTCTAGTGCTAGGAGACTAGAACGGAACAAAGAAGTGATTCAGAGCGAGCGTTCCATTCCGCAAGGCATGACTTTCACTC-CCAGCCAGAAACCACTGCTCCTAACCCAGCGCCATTTGTTACCCACAGGTGGTGACCTCCTCCAGATCAAGTGACTGGCAGAGCTCTATCCTCTCGCCCTCCTGCTGGCCCTCTCCCTCTGCACCCCCCTCccgccacccccccccccgcaccccCCACTCATCTCTGCCAGCTCCCTGCTCTG----CAGACTTCCGGGAAGGAGGCAGCGGGGGGATAAGCAGTTTTGGTGTCATCCTGAGCTCTGGTCTAAGTGTTTATGATATGCTGCTATagaagagaaagtgaaaagaacaGCTGGCTTTATTCAGTTGAGATTGAAAAGGCTTTTAATGAAAAGTTTAAATTACTCTCCCATCTTGAAAAAAATGCCTTGTCAGTAGCCCTACAAATGGTGAACTCAGTTGCATTTTAGATTATAGAAAACATACTTCTTTAAgtttaaacatatattttcaaCTAACTTTTT----------------GCCTCAACCATCCTGTTTTCTGAATTGTAC--GTGTCAGTTCCATGTTACTTGGAAT---ACATTCCTAt-tgtttaaaaggtttttttttgtaaaaatttatgTTAACTATACATTCTG-TGTGttgacataaaaaaa--------gaaaccaaa--tactgcaaatttaa----aaagctaaacagCTACATGAA----ATTTCCTAATTCTTTTTACAGTGCCATTACCAAAATTTAAAGTGTTTATGGGCTGTGATTAAATCTAAACTTGTAAGCAGAAgttagaggaaaaaaag--tttcTATCCAGGTCTCATTTTCCT---TAGCCTCT-CTGTAATTTGAAAAGTACGGTTGTCAAAAGAGCTTTTTTTAATGCCTACTCGTAAGTGGAACAAGTTCAGCAATTCTCAAAAGACACTAAACAATCTTTCTCACCACATTGTCAAGACATGTTCAGCTGACTATACTTGATTATGactgaatatttattttcccACCAATATAA----GCAGTTTTGATTAAGTAATTTTTATAGGTTAATTATATCCTGCAAGTAAGACAATCACAAATTCATTGTCATTA-------AAATCTCAGGAGTTAcagtataa

a score=46500
s chr3           148421358 2227 + 160039680 GAAGAAACCATTTATCCAAATAAGTATAACACAATATGATAAACACCATTACACCAACTTGAGTGTGTAAAGCGTGTA-TCCTGTGGCAGGTCTTTGCAGGTATATTACTTAATTCCATTTCATTCTGATAACAAAACTATTTCATTGGTAAGGTATTATGCCTGGCACCATCAATTAAGATAACAA--TAAGTGGAGAGACATGAGGAGGCTGTAACTTTGCCACAGTAGGCAAACATGCTGGAAGAGAAATTGCAAACTGTTTCCGTGTGTGAGCACCTGCCATCGTGTGTGGCTTGGCCTTTCTCTCAAAACTTCAGA-----------GAAACTATTCAGGAAACACTTTATTTTCAAATACTTTCATTCTTAAAGACTTTAT----TTTACTCTTCAAAGAGGAAATAagccagacttagtagtgtatatcatagaattgcagcta-------cagggaggggggggggatctgaggcaagagaattataggctaagtgctacctaggccacaggtagaatcaagactaacctgactattataaagatcctatttcaaaatgacagaaATGAAAAGGG--------GCTCAGATACAG---CTCAGGG---TTAGTTTAAGTTTGAGGCCT----------------------------AAATGGCTTC-----TCAGACATCCTAGA-ACAACATAGAAAACTGACTAGTGACCTTGACTTA-------------AGGAAGAAAGAGAATTAGAGAGTTGAACAGTGCTATGGGATAGGATGAAGGAAGGAGTCATATAAACTCCAGGAACTTCTTCATATCAAGAGAAGAACCCAGGGGC----CACAGAGCAATGGCTCTCACTGTCTGATGCCAAGAGCGGTGGCAAT----------------------GGGGATAATGCAGAAGGACCAGGCTGGCCCACTGTTCAGAAAGTGCACATAAGCCAGTCT----AAGGCAGCCTCAGT----------------------------GAGTGTGCCAGGGAAAGGAAAGAATCAGATGGTTATAAATGGATGCTTCTTAACCCG-GAAGAAAATCTACAGCTGACT--ATTTTGGGTAAGGCTACATTTTCAAGCTGCAGTCACAGGAGCCACATTCCCCCAAGAACAGCTGCACTCTGAATAGGTTG----AGACAGCCTCTCCCATTTCAAGTGGCATATCTTGCTGTCACTCGTGAGCACTTCA---------GAGGTAGGCAATGTATTATTGTC------------TGTGCTATGGGTGGCCTCAGTCCTC----ACTAACAAAATAACAA-GAAGGACAAGGTCCCTCAACAAGT-GTGGTTCCTCAGGGGAC-ACCTGGCAGCTTGTCACACTATCAAACCCTTGTTGGAAGTCATTGTAGCTAACTAGCTCTTGTACCCAAAGGCACTGAAAAAAGCTTCGGTTTTCTTTAATAATACTGAGTGTTTTTGTAGCAGTTTCTAATCTTTAATTAGTTAACCTGAGCCCCGTTcctgtgagataggtaaggataatcgtcctcattttacagatgagaaaacaaacactcagaggttaagtgactttgacagggttatttagtgagctgtggaggcagagccaAAGTACA-GACAACTTGCAGACCT-GGAGAAACAAAC------GGCCTTTGCCTTCAGCACGTAACCAGTACAATTCCAATAATGTTTAAGCAATCCATATGATGTCATTGTTTTCCTTTTTATCTAGATGACTTCCAAACCCTTACACTCTGGCCACTGAGTCATCAGTTACTGATGGTAAGTGACTAATG-GCAATATATGTTGTTATTGGCTATAGCCAGAGCAGAACTGGC----AAGAGAGTAGG-----TAAAGAGGATT-----AAGAACTACCATAAAACCTCCCT-------------TCCAATTAGAATAGAATTTATTTTAATAGCCTTACAT-AAGGTAAATAGCTTTTAAGAGCTGGAAGTTCAACCAAGGCAAGCGTCAAACATTTTGGAGCAAATTGAG-------ATGAAC--------------------TTCACCATGGAAACAAATGATCAATGACCTTCCCCAAATATTATAGACAACTATTTGCTAAAAGTGACCAAGACGCTAGTGGATTCTGTACACTTCAAAATCATTTGTTAGGAATGA------ACTTTAATATGAAATTTAAGTTCATATAGAGTTCATGATTAAGATATATTGAAATCAATGATTATACCCCCAAATTGAACCTGTCTCAAACAACAATAAAACCCTCAAAATTATGATTCGACTCCA-----TCTCATCTACCCTCCTTCCAAGTTGTGCTACAAGAATTATTTCATGCATTACTAGAATTATTTCAGGAGCCA---------------AACTGTCAGAAGGGTTGTGAAACCACAACTTCTTATCAACATCAATAGACCTTCCCAAGCT
s HiC_scaffold_1 135107103 2334 + 233722169 GGAGCAGACATTTACACAACTAACTATAATGCAACTCAATAAGAACTTCGACAAAAATTTATACTTCTATAGCATTTAATGTTGTAAAGCATTTTCACAAgcat--tgtttcatttcattttatcctgataacaaa-----ctcattga------gttATCTCT---ATcttaaatgaatacaaaaaaataaaaacagagacacaGGATGACCCTAGATTCCTCat------taaaaatg-tacaacagaGTTTGCAA---------------GAACA--------------------GGTAGTATTTTCAAAGATTGAAGACAATGATGATGATACATTTCACAGAAAACCTGACATTAAAACAA----ATTCTTCATGAACTTATAGTGCTTAATTTAGGAGGAAAGAATATTCCACCCAAAGCAATTACTATTAGTGATGTGAACCTGTTTTCACCATGGAATGTTCCAGAACTATGGGCACTGGTGCTGGAGGGTAGATTCTAGC-------CATTTAGGAGGGACCTCAACCTGAACAGTTCAGCCATTGTCCTTAAAATTAAGAGAAGTCAAAGAAGCactttattctcaaatatttatttttaaagattttaatttattcttaaagACCTTTGGTTTTTAAgcaaagaattaaaaggaaaaggtTTTGTGCTTAAAACAGCATAGGTACCGCACACAGAAATGACTGGAGACAGTGACTTAGTGAGGTGGaccaaggaagagaaagaaat---------------------ggaaacgAGGTAAGAATGGATCAT-----CCTTAGGTCCGT--------------AAGAAGCCAGAGGTAGAACCCTGAggaatatttctcattttcttctgccAAGAGACTCAGCATTCAAAAAAGATGCAAGGGAAGGGGGGGCGGGTGCAAAGAGGACAATTAGGTCCATTGTGCAGTGAACGCCTATGTAGAAATTTTATCAAAAGAACCTCTGTAACTATTGTTGCATCTGCCAGAGACCATGGATCTGCCAGGCAAAAGGTAAAATCTAAAGAA-GTAAACAAGTATTTCTTAACTTGTAAAGACAATCCTCAGCTGAATTCATTTTGTAAGAGGATATATTA-CAAGCTGCAATTATAATGACTACATCCCACAGGGATT--TTTCATTCTGAAGAGATAGttaaagatgatttctttggCTTGAAGTGGCATATCTTGCTATCACTTGTCAGCTCTTCAAGGGTGTCAGAGTTAGGAAATGTGTCACTGACACCAGGGTTCCTTGTGATCCAGGCAGCCTTGGTGCTCCTCAGCTAACAAAACAGCAATGAAGGGGCAGGTCCCAGGGCCACTCATCCTTCCTCAGGGAAGGAGCCGGCAGCTTAGCAGACTATCAAACACTGGTTGGA-GTCATTGTCGCTAAGTAGCACTTTTACCcaaaggcactgaaaat-gcttcAGTTTTCCTTAATaatactgaacatttttgcaGCAGTTTCTAATCTTTAATTAGTTAATCTGAACACCATCCCTGTGAGATAGGTAAGGATAATTATCCTCATTTTGTAGAGGAGAAAACAAACACTAAGAGGTTAAATGACTTTGACAAGGTTATTTAGTAAGCTGAGGACACAGAGCCAAAATGCAAGACAATTTTcagatctcaaaaaaacaaacctaaaatgCACTTTTCTTCAGCTTACAGCAAATATGATTCTCATAATGCTTAAGCACTCTATATGATGTAATTGTTTGCCTTCTTATCCAGATTACTT--GGGGCCTTAAACTCAGTCCACTGAATCATCAATTAGTGATGGGTGGTGACTAACACAGAATATGTGTTGCTGTTGGCTCCCACCAGGGCTGAACTGATTACAAATagtggaggaaaacaaaagaggattaaaaaaagaaatatcataaaGCGTCTCCCGTTGACAAGGAGTTCAA-TAGAAGACAATTTATTTTAATAGCCTTACATAAAGATAAATAACATGCAAGGGCTATAAATTCAATCAAggcaaatatcaaaatattaagaaCAAGTCAAGCCTTATTATAAACGATGTAATTGTAATAGTCAGTCCACAATGGACATAAATTATCAACTACACTTCAGACATGTCGTGCATCATAATTTGCCAAA------CAA----TTGTTAGATGCTATACA-TTGAACATCATTGGTCAGGAACTATGGCAGGGTTCAATA-GAAATTTA-----ATGTAGCATCTACAGTTttgacattttgaaataaaaaaattttccc--------------------aaaataaTAAACCTATTAAAAAATTGAAgtgaacttaaatattctcatttATCCAATTTCCAAAATTTAGTG-------TGTTCACCACACTACTAGGTGCATCTCAGTAATAATTTTCTACTTATTTCAGTTGccagaaaaattgtaaaatcaaAACTCCTTGTCAACATTAATAGATATTCAGAGGCT

a score=31045
s chr3           148424138 1242 + 160039680 tgtgtgtTACAGACTTCTCAATCTAAACCTGGCCCTTGGAGCACTTGGTCTCCTGGGAAAGATTTCAGGATGATAAAGAAGGAAGGCATTCCCTATAAGTAGCACA------ATTCAATTATATAATGAGTGCATTTTTAATTGCATGTGGTTTTTTCCCCCCTCCTATGTAAAGTGTAATTTTAAATTCAAATGTAGCTGTCTCACAGTCTCAATAGTCCCTTGCATAATTGGACTTAA----TTCCCAAGCACGAAAG---ATCAACTTCAATAGCGCTTGAAGTTTCCTCTAC-AACACAGCAGAAAGTGAGCATC--TTCTACTGAGTTGCGAGATAATTTCGAGATTCCCTGTATATTTTCCGTGGAAATTCACCTTTTATTTTCCTCCAGTCCTG----------------GTCACCTTCCTACACTTCTTTTCTGCACTTTTCCAGGCCGCTGAACATCTCTTCTCGATGGTCCCGCCCCC--------TCGGGCTACAC----------------TCCCTGCTCATTTAGGCT--------CTTAATTTTCCCT-------CTGGAGCGTAGTTCAACCTTCTGTTGACTTTTTCCACACAAATTCTCACCCACCAACTCAACAAATCGTTAGACCTTTCTCTAGAACCAATTTCCTTGCAAGATACAAGAGAAAGCGACTGTAAATATTTGCCATTCAATTTGCCCCGTAAAAATCGAAGGGATAAAAGCAAAAATCTAGAGGCTGCATAAAAAGCAAATGGGAGATGCGAGCAAGGAGTGTTAACTCTGATACATGTACGGCTGGCAAAGGTAGGCCGACTGATAAAAGTCCCAGGAACGGAGAAATTTAAAAGCCACGGTAGAAGCCTAGGGATTTGCCTCTGTGAAATCAAAAAAACAGAA----------------CGGAAACCGATCAGATATCATAGCAGGAGACACGCCTCCACACAGCAGGGTGGTGCTTTCCCGGTAGGGGGTCCAGCTCCGTACCTGCCTCCGAGAATCCGTGTTCACAATCAATCTCTATTGAGCAGGGACAATTCCAGGCTGCCATGTGAATCTTTGAAAG-CTACTAAAGAAAATCTCCACAGAGAGACATATTGCCGCCCCACAACCCTGACAGT-CCAAAGGAAGGTCACAGGCTTCCCAAGGGA--GG-------GTCACCCATGACCAAAGCTTCAGTTGGAGTTTTTCTCACCCCTGCAAGGAAACCCTCCTGGTTTCA--------------GAGTGCTTCAGGAAATCTAAGGCAAGGAACATTTATA--TAAAC-ATTAGAAAGACACTAGTCTACCAGGGGTGGGGTAAGAAAAGA
s HiC_scaffold_1 135109564 1295 + 233722169 TATATATACCAGATTTTTCAACTCATGTGTGGTCTAAGAACAAgcaattttcttgaaaaaaactttaagaagataaaataagaaagaatttatTGTAAATATCACATCCTTCACTCTAtt------tgcatg-atttttatttttctgtactttttt------tccattgaaaaaacaaactttaaactTGACTGTGACTGT-TGAAAATTTCAATATTTGCTTACAGAAGTGGACTTAACTAATTCCAAAGCACTAAAAGCCATCAATTTACTTA---CTAAAAATTTCTAAGATTAATGCAGTAG-----GAACATCCATTTTAC---------ATCCAATTACAGAATTTCCTCAATGTATTCCTTGGTGATT----GTCTTTTTTCTCAAAgtcctgtctttttgttttcaaaggtTCTTTCTTACTCTTCCCCTCCAAACCCTTCT----TTCTatccttccttcctccaggaCTCCTCCTCCACTGAGACTTGGACTTCCCATCTTCGCTGCTCAGGTCCCTGAGCCTTTAGGCTACTTCCAACTTCATTTCCCCCATTTTTCCTGCCAAGCAATTCAACCTGCTGGTGACTTTTCCCACACAAATTGTCATCCTCTG-CTCAGCAAAACATTGGCTGTTCTTCTACAACAAATATCCTCAAGGAgtgcaacagaaagaaaatgcaaatgtatACCCtttgatattttcatgacaaatgaaagggataaaagaacaaaaccacTGGCCCTACGAAAATGGAatgggaaataagagaaa--aatgttaaCTCTGATACACATGGAGCTGACAAAGGGGAAGCAACTGATAAAGTTCCGATGGACAGAGACATTTAAAAGCAGCTG-ATATGGCTAGAGATTTgcctctgtaaaataaaaaaaaaagaaaggaaaagaagagaaatggaaactGATCAGATAGCAGATCAGGCAATAGGCCTCCCC---GCAGGACTGGCTTTGCTCAGCATGGGAttctctcctggaggagcctctGAGAATCAGTGTTCACAATCAATCTCTATTGAGCAGGGACAATTTCAGTCTAGGGAGTGACTCTTTAAAAACCTACTAAAGCAAATTTCTGCACAGGGACTTTCTGCAGCACAGTGACCCTGACAATGGCAAAGGAAGGTCATAGGCCTCCCAGAGGCCTGGTCACCCTGTCACCCACCACCAAAGCCGCAGGTGA---TCTTTTTATTCTT----------CCTCCCGGCCACAGCAGGCATCTACATGATTGGCTCCAGAGAACTAGTACAAAGAACAATTAAAAGTAAACTTTTAGAAAGATATTAGCAT---AGGAGGGaggtaaagaaaaa

a score=109512
s chr3           148426176 4293 + 160039680 [encoded data, 4724 characters]
s HiC_scaffold_1 135110974 4431 + 233722169 [encoded data, 4724 characters]

a score=16922
s chr3           148433697 689 + 160039680 GCTTCTTTATCCGGCCCTGGACTCAATTCTCCTCTCAACTCCTAGCATTCCCCAGTTGGAGATCATTGTCACCTGTACCTAGGGCAAAGAACAAACTGGCCTTTCATTTCATTCTCCAGCCTCAGAAGAGTAGAAAGCATCATTTCCTGAACTTAATCTGTAAATACAGTAATGTTCTCTAAGTGTGGGTTATATGGTTACTCAAAGGGAAGCTGTACTTGTTTTAATATGGTGATTGTAGCCATACATTTTGATTTTATGAGTTTT-ATACAGCACTATTACTTGTTTGGTAATCTTAAGGATATTGTTATAATCTGCTTTATGGGTTAGGTATTAGCGAGACTGC-CTAACACTGTCCCAGTTAAAAGTACAAAAGCAACTCATGTGAT----------TCCGGCTTGAGCCATATCTTACAGCCACAGGTTCCTTAGGCAGATTC-TGCTTTTTGGTTCCAGCCTCAGGCTGCTGGAAAATGTAACTCCTGTCCTTCATAACACTGATTTATCTGAATGTACCCAAGCTCTGTGCTTTGTCCTACATGTGTCAAACTCTCGAGTCTCTTCAGAACCTGATAAGCAGCCATGTTCTTATGTTATTCCTGTCAACACAATGCTTGCTCGTGGGCTGACTCTTCCTTGTGCTTACT--TAGCTTTTAAGACCACAAGGTACATT-CTTGGTTTTCTGTCTTCTTT
s HiC_scaffold_1 135118563 684 + 233722169 GTTTCTCCATTCTGTACTGTACCC--TCCTTTCCTCCATGCTTGGCACTCCCCACCT--CGGTCATTATCTCCCTTAGTCAGAGTACAGAAT----tgtctttttgttctattttctagCTTCAGATGAGTAAAAGACACTGCTTCTTGAGTTTAAACCCTAAACACCATAATATCCTCCAAACACGGGTTATACAGTTATTTCAAGAAAAACT--AGTAGTTTTAATACGGTTATCACAGccacacatttcttttttatgagttTTTATATAGCACTATTACTTACGTGCTAATCCTACGGATATTGTTGTAATTTGTTTTATGTGCTAAGTATTATAAAGGCCTCGCTAGCGCTGCTATTGTGAAAGGTCTGCAAGCACCTCATTTGATCGCGCGTGTCTCTGCCTTGCACTGCGTCTGATTATCACGGGCTCCACACACAGCTTTAGGCGCGCTGACGCAAGCCTTGTGTTCTTGGAAATACTAACTCCTTTTCTGCAGAA-GCTGA-TCACCCGCCAGCTCCCTGAAGCCGGGCCTCTTGAGAAAT-TGCGCAGCTTTAGGCTC-CTGCTCCGCGTGATGGGCATCCCTTGTCTTGTTCCCTGCAGACCAGATCAGTGCTTGTTTGTAAACCAACccttctgtctgtttctctgtaaCTTTTCAAACTGCAG---ACACTgcttggt----tgtttccttt

a score=51005
s chr3           148441166 3171 + 160039680 agtgtAAAATCAAAAGGAA-GATAAAATTAAAGTCAAAGTTAGTAGGACTGTGAG-----TGGAG--TTCTTCCATTACTTGTGCGAGTGAGGAATTCTACAGTCACTTGAAAG-ACCATAACGCCTAGGAACTAGCAAATCtatttctaaaa---------gaagttaaa---------atatccataccacaaaagatttctatacaa--acaaccatgtcagccttattcagaataatcaataactagaaagtgtcaactgtccatctacaga-gagtgaaaaataattgaagctatatgttgggatataaaa-atgcctgtgaaacataaaacagtgagcgattgatgcatgcaat----tgtgtgaacctcaaaaaagatgttaatcaaatacatggaaagaatacatactTAAATACATTGAAGCCCGAGTTACATGCAA------GGGATCT----------------------------------------TCAGTTACAAGGCACGGGCCTGCAATAGTCTGTTTA----------GTTTGGGTTG---------------------------TCAGTTTT----------------------------------TTGTTGTTGTTGTTGTTTTTTAAT--ATACACAATTGTCAAA-TGTATCAATCCAACCCTGAACTTTTCTACTGTCTTTTCATTTCATTGTTTCTGATTTGTTGCTTAATGAAAATAAAAAGTAAAAATAAACAGCTCCTTGAAGAAATATCAAGAGGAAGCAGATTCCAGAGACTTGGATTAGAAAGAGACGGAGATTAAGACTGAAAAAGGACCCCGCTTTCCCCTCGAGATAACAGCTGGAGGATGCCTGACATAACTTCTTTACCCCCAAGCCATGGAGACTGGAGTAAAAATGGTAGAACAGTTTTTCTCTGAAACGAAACAGATCTCGTCTAATCCATTTGTGCTGACTGCAGCTGGAAGAGCAGAAGCTGGCCAAGCCCACGCAGGCTCCCTGGGTTTTGTCTTAAATGTTAGCATTGATCCATAACAATTTAAAGGGGAGCTGTGTGGGAGTGCAAGCCCTCGGA-----AGGTTTGTTTCCATTCGAGTTTTGAAATAATGTTTCTTGTTAATCCTCTCTTCAGTACATACTATCTTAAAG--------------------------------------------------------------GGCCAAATCATATGTGTGTGCTAAGCACTCA-----AGTGTGTGATGGAAGTCACACCCAGACTGAGCAGTAAATCAGGGCATTAGGATTCTTGGACTGCACGTGGAATTTCACTCATTTATCAAGGTTCTGGTCCTCAC-GGAGCGCCCATTCTCTGAAGAAAAAAAACCTGCTACCATAGAGCATGCATATCTCATAATATGTAAATATAAATACATATCCACTTATGTATATATGAACTTATGATTAATAACACAATATCTGACATTTTGAAGAATTAAAACTGCTGGAATGTTTGACATCATTTTTCAGCGATGACAGTAACAGATCTTCTGACAGAGATTGAAGAAAGAGTAATGATGTCGATGTTTGTTTTGGAAGATACTTTCTAGGAAGAGGGGTTTGAGCAAAgacagattacatgaatcagagagctgaaaggaaccagg--------gggtcatatcttcatgcccaaactagaattctctctaccacattgactgattgatgatcaacctgtctctgcttgaattctttcagagacAACAACAAAAGACTCCACTCTGGAATTTGGCCCAATCAGATTCTTCTCCTGAGAAAAATGAATGTGGAGCTGAAGATCCTGACAACACGCTGCTGTGAACTCTGCAGCCAAAAGGTCAAATCAAGTCAGGACTGGAGAAAGTAAATGAGATCTGGGAAGGGCAGATGCAGATAGCAGAATAGCCAGAAGGCCAAGCTACCTTAAAAAGAATGCAGAGTGCTAGACAAAGGCAGACCCGAGAAGCCCCACACCCCTGACAGAATAGGCTTGCTTCCTATTTCTGAGCATCCTCTCTCTCCTCAGATTTAAGTATCTCACAATGTACATCATTTGCCACAACACCATTCCAGAAAGCAT-AAGACCAG------------------Attgtctaagacagagattatagaaccacattttatctcaccataaaagcccagcctcggggttgtttttttgtggatgtagaaagaaaaatgcactcgcaaaaatagcacatagaccag---aagaagccaat----ggaattaagactttgacagtctgtcaagaccatggcacaatgggaccacgttttgccaatataaa-tagtcctgtcaaaacagggatcttttaagctctgtgc----aatattctaaggtttaaatgccaggtggtttgggcaatagtaatatta-ttctgcaaaattatgagacaaagg----aaaaACATCATGGGCATTGTTAAAATAGGAACTAGTCAAGTGGTTTTGACAACCAAGTCATG-------AAAGAGT-----TTGAGGAGAA-----------TTTGAAAGCATGAAGCCATTACCTTTGACCTTGCGTTACTGTGGAAACAGTATGTGTTAGCATGAAGAAAAACTTCTCCTCGGGCTTTACTTGTTATTTATTCTTACTGGGGATTCTGTTTTCTTATGCCCTGTCCCCCTCTatatatatatacatacatacatacatacatacatacatacatacatacatacatacatgcatacacacacacCTCTCTACATCtgtgtgtgtgtgtgtgtgtgtgtatgCATCTATGTGC-------------ATTTCCTTCCATAGTCCATATAAACCTTTACAACTAAGGCCATTTTTTTCAGGTTTTATCCCTAGAAGAAGTTTATCTCAGACATTGACTGTGCTGACTTAGAAATCCAATTGCATCGTGTCTGTGGATAAGAGCGCCTCTGAGCATTACTGACTGATGTGGGCTAGATGGATAAGCCTCAGATATTTACCAGAAAAATCAGAGTATAATTCTTTCTCCAAG------------AAAAGAAACTTAGCAATTATATATAAAAAAGTTTTGTTAATCCCTTATAGGGTGCCAAAAAATAGAAAATATAAAGTACCTTAAAGCTACTGCGCATTAGGCATTGC--TGGTTCTTAAGCCATGTAAAACAGAA----TTAGTGTCTTCATGCATATAAAACAAAATCATAATAACAGAAGGAAGTTGGA-AAATTCAAGCTTTTAAAGGGTTTTTAAC-CTTTCTATTTTAGTAAACTTGTCA-TTAAATTAATACATTTCATTAAAAAGAATAATATTCTCAT-AGATTTTCATTGGAAATATATTGA-CATAA-TTTTTAAAAGAGATGTTATCATTTACTACATATATTTAA-ATGTATCAATGTATAAATGTGTAGAACCAACAACATTCTTTCCTT
s HiC_scaffold_1 135122512 3038 + 233722169 aatctaagatCAAAAagactgacaaaaataaa-----agttggCAAGAACGTGAAACAATTGGAAATTgcctacattgctggtgggagtgaaGAATGGTA-ATTCACACAAAAGGACTATAAAGTC--GTTTCTTATAAATTTAAGTATAAAACTAACCTATAAAGTAAAAGCCCTTTATAAGTTTATGCCCCACA---TTCTTATATAATAATGTCCATGGCAACCTTACTTAGAACAGCCAATAACTAGAAAATACCAA-TGCTCGTCTACAGAAGAATGGGTAAAAATAGG-GTTGCATACTGTAACATGGAATGTAACTGGACAACACAAAATGATGTAATCTTGATTCATACAACAGCATGAATGAACCTCAAACACACT-TTGAGTGAATACAGACATAGAGGACATGCATGTACCAATCGA--CTAAATTTGCATGAAGCTGAGTGAgacctcattctttttttttttttttttttgtctttttcctttttatcggtaccagggatcgaactcacgactgcctgcttgcaaggcaggcgcttatgccgctgagctaaatccccagccccgagacctCATTCTTAGTGATAAAGTACCCATCTACCCTGTTCCACATCTTGCTTGGGGTGCCACTTACAAAGTAATACACAATTGTCAAACTGCACTAACTTGAAACTGAACCTCTCTAAGATCTTATGATTAc----------------tactcaaaggaaaaaaaaagggaaaaga----gtttCTTGAAGAGGCATCT----------GACT------ACTT----TATACATAGGCAG---TCGTGATGGA-----------GCTTTTGCCCAGAGAGAACTGCACAAGA---CCTGACATCA-TCCTTCACCCCACGACCC---AGAGTGGAGCGCAAA--------CTCCTTCTCCTTGAAACAAAACTGAGCCAGTATAATCAGTTTGTGCTCATTGTGAGTGAAAGA-----AGTTTTACATGCAAAAGCAgcttcatttaatttttgcttaAACTTTA-TATTAgtcta---caatttaaaagaaagttaaCTGAAAATATA-GATAttgtatttttagatttattttctttttgtttttaaaattatgtttcataTGAAGCCTCTTATCAAAATATTGTATCTTAAAGTCACATACAAAGGTAAGACGGTGCTTGCTAAATGCACGTGGGTACAAGGAGATGGTTTCCTTAGCTATATTACACATATATATTAAGTACTCAGCTTAAATTTATGACAGAAACAACACAAAGACTAGGTTCTTAATCA-----TCTAGATTATTATGCTT------GGATTTTACTAATTTATAACAGAAATTTTTCACACTGAAAAGTTCATTCTGTGAA-ACAATTTATCTGGTCCCATGCAGCATGCATATCTTACActacacatacataaatacatataagtttatgtatatatgtacatatgattAATAATACAACATCTGGCATTTTGAGGAATTAAAATTGCTGGAATGCTCTACATCATTTTTCAGTGGTGACAGTAGCAAGTCTTCTGACAGAGATTGAAAAAAGAGTAATGATGTAGATGTTTATTTTGGAAGATACTTTCTTGGGAGAGGGTTTTAAGCAAAGATGTATGACTTGAATTTTGGAGCTGAAAGGAATTAGGGGTCAGCTGGTTCATGT-TCCATGCCCAAACTGGAACTCACTCTACCACATTGAC----TGATGATCAACCTGCCTCTGCTTGAATTCTTTTTGTAACAAT----GAAGTTTCTACTTTGGAAGTCAGCCCAATTACATTCCTC----------------------------------------------------------------------------------------------------------------------------------------------------ATTACCT------------------------------------------CTCTGTTTCTTCATCAAAATACTCCAGTTTTCTAAT-------------------CTGGGGTTTAAATGTGTTACAATGTACGCCATTTGGTGCCACAACcatacagaaaagataaaaaccagaCTACTCAAGTAAACAGAATTGTCTGAAATAGCAATTGTAGAGGCAC-CATCATCTAACCACCCATGCCCTGGTTTCAGG--GCTCTCTTCTAGAGACCCAAAGATTTCTTAGTTCTCAAGACAAGGACAAGGACATGGGCAAGAAGCCACCCAGAAGAGGTAGGACATTGACAATCTGTCAAGACTATTGT-CAAAGGAATtcatttttgctattataaaGTATCCCTGTTTAAACAGGAATCTCTTAAGATAAGTGTAATAAATATCTTA---TTTAAGTGACAG--GGTTTCAGGAatattatttttgcttctgtaaAATCAT---ATTTAGGTGCTTAAAAAATCATGGG-ATTATATCTATAGAAGTAAGTCAGATACTTATGGTAGCCTAGTCGTGACTGAATAAAAAGTCGTGACTGAATAAaataatcagaatttttaaaaggatgcAGTCTTTATCTTTGGC----AGTTACTATG------------------------------------------TTCACTTCCTCATTACAAATATGGATAAATCCATTGTTTCAT----------------------TAGGAAAACATGCATTAGTTCAGTGACTTTTCCTTA-ATCCTTGCTTAC-TGCTTAC----------CTGTGTGTCGGTTTTGGAGTGT-TATTTCCTTATGATTCTATTTGCTGTGTATACACTTGTTTCTTTCTACAGT--ATATATACTTTCATGATTCAGGCTGGGATTT-----TTTTACCC------------TATTT---------------TTGATTTATAAGTCTGGTTCCATCACATCTATGGATAAGAGTGCCTTAGAGTACAACTAAAGAATGTGGAATGGACAGATAAGCTTTAGCTATTTACCAG-AAAATCAAAGTATAGTTCTTTctccaagggggaaaaaaaaaaaaaaaccttggcaATAATATACAAAAAAGTTGTTTTAATCCC-TATAGAGAGCTAAAACATAGAAAATAGAAGATGTCTTACATGGACTGAATCTCAGTTATTGCCATGTATCCAAAACTATTTAGGATATGATTGTTTATTGTCATTGCACATTTAAAGCAAA---TTATTTAAAGAAGTACAGTGaatgtttttcagattttaaacaatttgaaaagcttTCCATTgtaatttattcttaatttaaataaatgctcTATACTAAA------AATATTCTTATGAAAATTTCAT--GGAATGTAATGAGCACAAGCTTTTGATAAGGAATTTGTCAATTGTTATATACGTTTAACATGTACCAATGCTCAAATACATATAACtatcaacatattttattt

a score=90427
s chr3           148446073 4833 + 160039680 [encoded data, 5283 characters]
s HiC_scaffold_1 135129904 4925 + 233722169 [encoded data, 5283 characters]

a score=60993
s chr3           148451645 4712 + 160039680 [encoded data, 5095 characters]
s HiC_scaffold_1 135136733 4325 + 233722169 [encoded data, 5095 characters]

a score=37800
s chr3           148460654 3002 + 160039680 aaaTGATTGAATTCTCTG-TGTCCCTACATACAAAAGAAGACAGCGCTGAAGAAAGAATGGTTTGGTTTGAACCTTTTCCATGCAGATGCTCACAGGAAGCAGAAGATTTGGAGTTCAATAGCTTATGATTGCTTTTTTTTTTCTTATCATATAGATTGCTGGAGCA-CTTTTAAGTTCAATTTGTAAAATGTTAGCCAAATCGATTGTTCCCATGTGACACCGGCCATGATTTTCCTCATTTCGAGATCTGCTCTCAAAAG--------TGAGCATTTATTTCATTTTCTCCAGCTTTTGGAACTCCCTGTTTCTCCATTAGCCACTGTTGTCTGTACGGGGGTTCCAGGTCTGCTTTTTTCTGATGACCTCT-GCCAGTGAGCACAGCTGACGCCATTTTCCAAGTGTGCCAGGAAGCTCTTCT--TCCT---------GGTTCCAAAATTCTGCTTAGGAAAACAATTTGATGCAGGCGAGCTGTGATATCCTCAGTTTCTGCTCCCAAATCCTTGACCGTGATGCTGAG-----------GACCCGACTT------------GGAGATAAAGTCTTTGGAGTACGTACCCTTAAATTCAGTTCTAAGTCAGGAGACACAGCATCAATCCCCTTCTTAATTCTTCT-----AGTACCATTTGCTTTT-ATTAATAAACATGATTTAATTTAAATGGTTTCATAAGATGTTATTATTAAAACGTAAAAAAATAAATAAAAACAATGTACATCAAAATGAACCAAACACAAAGTCCATACAACCCAGTGAACAATAAGAGTAGGAATTTGGGTGCCCATTAAATCTTACATCTTCAGTATTTGTTATGTTTTATGTGCTTATTTCCC---ACCGAACCTCCCCTCCCCAAAAATAATGATAGAATTAGAACTAAAAGAGAAAATGGCTTTTAATTCAATTATAAAGGACTTTTTATTCCTCATTGTGCAGAACCTTACTCAGGATGACTATATAGACTTAGGATTTGAACACCTTGACTCAAGAGGG-AAATTTTATTATCTCATTTTGCAACTTTT-AGTACGTAAATATTTTAATCTCCCATGGATTACACTGGTATCTATTATTTT-CAGTTTTTCTCATCCTGCAAAATCTACTTAATGCAATATTTTATACTCCCTCCAGGGGTATGCTTTTATGATCATGATTTTAAAAAATGACTTGTTCCTTTTTGTAATGCCGGTTCCTAGCCCGGGGAGAGAGTTTATCCTGCCATATGCTCAGCGAGTCGCTTCCGTTTCTGAGGTTCTTATTTGCAAAGCTCTACTGCTGGGGTTGTT-------------------GGTTTTGTTTTTGTGTATTTGGAACCATTAAATAGTCTAAAAAGAGAAAAGAGAAAA----AATAAATAAACAAGAGAGTCATGGTGAAAGTATCTGTCCCTTTGTTCCCAATGTGTAGTgtggaacaagcctataattccagtgttcaggaggcacagactggaagatcaggagttcatagctacataacaagtcaaggctagcctagctacatgagagcctatctcaaacaacaaaaCGGGTAAAAATATTCACAATTTGTCCCTCTCTCACAGATCAGATCACTTTGGTGGCACCAAGCCTTACTTCTGAGTtctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTGTTTTACCTTTTTAACATACTGTGATATAGGTAGAAATA---TGAAATCAGGG-GAAAGCGAGAGTCAGCTGAAACCTTGGCA---------------CATATCAGCACAATGGAATTGCAAACCACTAACCCTCCAGGCTAAGATGTTTCTAGAAGAAGGGGAGAGAGTCTTCACTATAAGGAATTGTAGCAAGGTGTGGGGACTCAGGTGACTCACAAAAACACTCA-CACCTGTTTGAT-------TGCTGAGATTTTCATTAC---TACTGCAAAAATACCAAGGC---TGCTCTCCTTAGCTTTCATAATTTCACTTTACAGGC-ACTTTGGAATTT-------TGACTGCTCTTTTGCATAGACCAT---------TACTAggaggaggaggaggaggggggggggagggggGGAGAAAGAAAG--------ATTCTGA-----------ATTATTTTGCATTCCATTCACAGTTGTGCATA-TTATCGACACACACATGCCAATACTATAA-----TACTTACATCTGTAACAGAATACAAATGAAAATGTCA----TTTTGAGATGAACATGCAGGGGAACTTCAACAGTTAGA-TCTGAGTGGTCCAGTGCCCAGAGTAGAGT----GGGGAGGGTTTCTCCAGCTGCTCACTGTGCCTTACACGTAAGTCTTGGATCAGCAGAGAGTTTGGGAGAATAGCAATCGGAGCACAGCAGATGGCGGTGACTTGACAACTTATCCTGGTACAGGACGCAAACAGTGATGGCGGCAAATCAGAGTGTGCGTAGACTTGGAATACAAATGAGACGAGCGTCAACCTGACAAATGTGTCCTCCTCGCTGCTTCTAATT-ATGCCTCAGAAGAGCGATTTTTAATGAACAATCAAAAATCCAATAGAGTGAACTTCTGATTAACTGTAAATACAGAGCATAAAATATGTGGGTGATA--TCTTAAAAATAATAAACAGCTTTAGAAGTTGTTGCAGGAAGCAGAGGAACCGACACTCTCTTACAAGCAGCACGCACTACTGAAGTT----CATGCTCTGCTCCAAGACTTGAAGGCACTGAGAGCTGCAGTATTAGTGATGTGGGTTTCATGTAT----------AGCAGCCTCAGTTTAGAATGCATAGAACTTAGATTCTGCTTTTATATTTC-----------TCTTACACATTAGTCT-----TA-ATGGGTTCGTGGATGCATAGTTGGCATTTCCTCAGTGAAATAAATCCTGATCTGAAGGCAATTGTCACTTTTTCAAGTAGGAGGAGTCTTAAAACCATGCA--AACCTTAAAAAGAGTAGACAGaaaacaaacaaacaaaaaaaaaaaaaaaaaaCCTTGGTTTTCACCTTATGTTTACGttgtgacatgaccttgaaaatgttattta
s HiC_scaffold_1 135145848 2696 + 233722169 AAATGGCTTAATTCTCTAATGTTCACATGTG-AGATAAAGAAAAGGCTGAAGGGAAA------TGCTTTCCACCTTTCCCACATA-ATATTCACAGGAGCCAGGAATTTTCAGG---AATAGCCTAAGATTATTTTTCCT--------CATATAAATTACTGGTGTATCCTTTAAATTCACTTTGAACACTTTTTATCCAAATGCTT-TTCTTATAGTAGGCTggacattattttcatttcttccagaTTTTCTCTGAAGAACAAAAATATGAGTGCTGATTTCATTTCCCCAAG-TTTTGGAA-TCATACATTCTCCATTAGCCAGTGTTGGTTTT--TGGATTTGAATGTTTTCCTTTTGCTCCAGACTCCTTGCAACTGAGTACGGATGATGTCACTTCCTGTGTGTGCCATAACACTTTTCCAGTCCTCAAAGGCATGAGTGGCAACTCCTGCTTATGAAAA---------GCAGTCCAGAC----TCTCATAATTTTATGCTGCCAGAATCTTGACCCCAATCTCAAAATGCCAAAAGTGGCCTGGTTCCACTACGGGGGCGGGGGGTGGGTGGGTGCAGTATGTTTAACTAAACCCCATG-TAAGTCACAGAGTCAAGTTTCAATTCtcttcttatttcttccttttaagcaccatttattttttatttataaaaaaaaattaatttg-----------------------------------------------------------------gggctggagacatagctcag------cagtacagcatc----------------tGCCTAACAattatgaggtc--------------------atgagttcaatccctggtaccaaaatgaatcaatcaataaataatttttaaatt---------------------ttttaatatatttat----------ttatttaatagattGCAGGACCTTAATCATACTGATTATATGAGTTTAGT-TTTAAACACCTGGAAACAAGATTGTAAAGTATCGCACCTCGTTTTCCTGCTTTTTAATGCATGagtgttttcatttcctgtgGATTACTCCAATATCTATTATTTTTCAGCTTTCTTCATACTGCAAAAACTATTTAGTACAATATTTTATACTACCTTC-TGGGCATGTCTTTATgatcacagttttaaaaaattatttgttcctTTTTGAAATACCTTTTTATAGCCTGG--AGAGGGTTTATCTTGCCATCTGCTCACCAAATCACTTTAGCTTCAAAGTTTTCTTTCTGCAGTGCTttacttcttt--ttgtttgctGTTCGGTatttcctgggttttttttttttttccttaaaactgTTAAGTATTCTacaaggaaagaagaggaaatccaaattaataaaaaaggggtt-----tcaaaatgtttgtgcaattg----------------------------------ctagTGGTAATGATGTAAATGGTAGAA------------------------------------------------------------------------------AGGAATGTTTACAGTCAATATCCCTACC-CAGGGC---TCACCGTGGTGGGGCCA-GCCCTCTTTAAGAGGTTTCA----------------------------------------------------------------GGGTGTTGGCTTGTTTGTGT-------------------------------------------------TGACAGAC-ATGTCATACATAGAAGCAGGGTGAAACAAGAGCAAAATTTAGAATTAA--GAAAATCTGACAATAAAGATGTGAGGCTATATCCACTCCATG--CTGGAAAATCACTAACCTTC-AGACTGTGTTCTTTGTAGAATAGTGGTAATAATTCTTCACCATGTAGGATTGCCACCAGGAGTGGAGATAAAGGTGG-------AAACATACAGTACATGTGGGACACACTAGTAGTGGTATTATTATTACAGTTGTTgttaagagataaagaaaaacattctctTTAACGCTGTTAATTTTACTCTCTTGACCATTTTGGGGTttcctactttttctgttttcccccacagactatgttttcttttacaaatagaa---------------------------caaatgaaatttattattattcttattattattaatattatatcTCTTCCTAGTCACAGTTATAAATAACTATTAACTCAAAAATTTCAATGTGACCAGGGTTTATTGACTTTCGTAATggaaga--aatgtaaattttaacaatatttggAT-AATTTG-------AGTTAAACAGTTAGAATCTGCATCATCTAG----CAACATGGAGTATGAGGGATAGGCTCCTCTAGTTCTTGATTGTACCTTAAAT-TAAGTGTTGGATAAACAAAGACTTCTGGGGAATATGAGGCAGGATATGACAGATGGTGATAGCTTTCAAACTTATCCTTGTAGAGAAGGCAAAGAGGGAAGATAACCAATCAATGTGCACCTGTACttagaattcaaataaaaaacaagtaaaagtgACAAAC-TGGCACACACACAGATCTTAATTTATGCTTCAGAAGAACGATTTTTAATGAACAATCAAAAATCCAATAGAGTGAACCCTTGATTAACTGTGAATATGAAGCAGGAAATACGTGaataataacttttttaaaaaataaac-----tataaaatg-tgTATGATGTTGGAAAGCAGACACATTTT---AAATAACTTGCACACCTCAGATGCCTACATCCTCGGCTCT--GACTTGAA---ACCTGAAGCAGTAACATTAGTCACTCCAGCACCACGTATACATGAAGAAAACAGCCTAAAATTATCACTCATAGCATTTGGCTTCCCTTTTCATCCTTCCTGAGTTGACTCCTTAAATTTTGGTCTATCAATACATGGGTTCATGAATTTTTACCTTTCATTTCCTCTATAGAACAAATCTGATTTCGACATTAATTGACAC-----CAATTAACAGTGACC--AGTACCCTTCATGACCCTCCCAAAAGGTCT-----AAAAGTACAGGTCAGAAGACAAGGA------CATGGTCTTCACTCTCCA-GTAAGCTGCCATGTGACCCTGAGAAAGTCATTCA

a score=23903
s chr3           148468509 1243 + 160039680 CAATTCAAACAATGACAGAGCCTTGCTGGCG-------------GTGCCCTCTCAGCCAAGTCTCATT-GTCCAGCATGGATGAACCAAGCTTCCACTGAACTCAATAAACAGGAGCTGGAAAGGCAATGCCCGAATCCATTCCTATTGCTGAGAAGGGCAGTCTAGCTTTGTCAGAGTTCCACAAGGTCTGGTTTACATTGAGACCCTCTAAAATCAGTT--CAAGTGATTGACACTGGGATAGAAGTAGCTTTGA--CTGTGACTCAAGACTGCTTTAAGCAGAAAGGCCGGGATGAGAAATTT-ATGTCTTCGAGTCTGACCACAACCTACATCCT------------TAAGTC-----------------ACTGGTC-CAGGTAAA--------------------------------TATCCTTCTGG-----------------------------------------------------------------------------------------------------TCTACCT-----------------------------------CATGGAAGAGAAAGGTGAGTTCTGGTTAACAGCTGAAAATAGAAATATGATAGAGGACTAGGAGGTAAAGAGGCAACAAAAACCTCTAGGAGAAAAATAAGCAAACCCAGA-----CACCAAAGAATTTCCAAAG-----AGGGAGGAGACTACAGATAGGGAAGACACACAAGGATTCCTTGGTG---GCCTTGTTGTAAAGGGATTAAGATAAATATTTGGGATAAAAAGAAGACTCAGCAAGGGTAGAGAAGGGAGGGATTC------------CTGTGAGCAGG-GCTGGTTTGTTAGTATAATGAAACTG-------TGCGGGCCTGCTTTGCAGAACTTGTTTCCAATCCCTTGGAGACATTTCCCCTTCAGAAGAAAGGATGTAGAATATTAGAGTCTTGGCAGGGGGTACAGAAAAATCTATGCTGCT-TCAGGTCCAACCCAGCAGTGGAGGATTAAGGTGTGATTGAGTGGATTGCATTCATCAGCCTCACACTCT---CAGATCCCCCAGGTCCTGCCCAGGGCTTCCACCAGGCA-GTGTCCCCAGGAGACTC-CCCAGTGCTCAGTCCATTTCT------TCCCTATTTTTCTCGTCACCTCCT------------GTGCGGTATAGAAACCCTCAACTAAGCAGTTTGTGCCCTTCAAAGATAAAGT----TCTTGAAAGTCATTGGGAGGAGTGCAAAACTGTAGGCTTTATGCTTAACCTTAAACCAACACCA-----GGCACCTTC-CTTCCATCACTGCACATCTGGAATTGTTTGACTCAGTTAGCTTGAATGAGTTTCCCTCTTGCTTTGTCAGAGAGCTTTCCTTATAGACACAAAGCTGCTCACCTATGAACCTGGGACA-TACCTG-----CTTCCGTCTACCCATTGCTTTGGATTAGCAGCTTCAAATACTACCAGATGAATAAAAATTATA
s HiC_scaffold_1 135154406 1500 + 233722169 CAGTTTAGATACTACCAGAATCTAATTGGCATCTGTAATTCCAAATGTCTTCTCAAGCACATCTGATTTGTCCAACCTGGAT----CAGACACCTACCCACCTCAATAAACTGCAGGTTGTAGGTCAGTGCCAGAACCCACTCCATTTACAGAAAAGGCCAACATGGTCTTGGCAGAATTTCCAGAGGAATTTTATATATTCAGAGCTACTGCAATCAATTGCTCCTTGGCTGACACCAGGATAGTAATAGCTAAGAGTCTATGACTGAAGTCA----TGTGTAGAAGCACCAGGATGCGTATTTTTCTCTCTCCGGATCTGGCCACAATCTACATAATAACTAATAGATGTATGTCCTACTTAGCTATTTCAAACTGGCCGCAGCTGAAGGATTCCATATTAAGAACTTGAAAAAGACTGGCATTATTCTGGGCATCATGGCGCACTCTTGTAATCTCTGtactcgaggctgaggcaggaggatcattacaagttcagaACTACTCTGGGATACAAcctgagtccaaggccagcctaactgcagagtgaaaccctgtctcaaaaaaaaagactggcATCAAAGCGAAAAGTTCATTCAAGTTAACAGTTTAGGATACAAATAAACTGCAGAGCCAGAAAGTGAAGCGGCAGCAAAGCCTCTCCTGAGAGG--TGAGTAAACGCAAAGCAACAACTAAACGAATTCCACAGGGCAGAGGACTGAGCCTCTAGACAGGAAAGAAGTGCAACTATTCCTTTGAGAGTGCCTTGGCTTAAAGAGATTAAGGTAAATATTTAGGATAAAAA-ACGAATCAACTAGGACAAGACAGCAAGGAATTCAGCGTGATTACTCCATGAGCGGGAGCTGGTTTGTTATTATAATGAAACAAGCCACCCCGCTGGCACCTATACCCTGACTTGTTTCCAATCCTATTGAGATTTCTACCCTTCAAAAGAAAGGATGCGGATTATTAGACTCTTAGCAGGAGGTACAGAAAAATCTACCTTGCTCTTAGGTCCCACCCAGCAGTGGTGGATTAAGGTGTGATTGAATGGATTG---GCAATAGCCCCACACTCTGTGAAGGGCATCCAGGTTC-ATTCAGGATCCCCAACATGTAGGCTTCCCCAGTAGACTCTCCCAGTGTTGCTTCTGTTCCTGTGTTGGCAGTATTCAT----TCACCTCCTTGAGTTGCACAGGTGCAGTGTGCTATCCTACAACCAAG-AGTGTGT---CTTCAGACATGGTATGTACCCTTAAACACTGTTGAGAAGAGG--AAGATGCTATCCTTTA---CTACTTTTGAAGTGAAAACAGTGTTGGCACCTTTATTTTCATCACTAGACAACACGAATCATTTGAAACTATTTGTTTAAATCGGTTTGAATCAGGTGGTACCAGAGAGCTTTTCC--TAAACACTTAACTTACTATTCCTCAAAATAGGAGAGTAACTAGTGTTTTTTCATCTTCTATTTACCCTAGA-GATCACCT--AAATATTATTTGATGAATAAAGAGAATA

a score=101796
s chr3           148471304 4157 + 160039680 [encoded data, 4653 characters]
s HiC_scaffold_1 135159487 4370 + 233722169 [encoded data, 4653 characters]

a score=24091
s chr3           148478387 1615 + 160039680 ATCGGAAATTCTACGCATTGCCGTGGTATGAAGGCTACCATAACTTTCATAAAATATTTATCATACAAA----GTGATTCAATTGCCAT-TGCCTGAAAAATGATGGTGACCTCACAAATAAACATAAACAAAAGAAACATGA-GCAAAATTGTTCCTGTGTGATGGTG-----------TTATTAAATCTTAACACACCTGTCTGAGTTGGTGAAGAGAGAAAG-ATGTTATAAAAGGTGTATAAAGGAAATGGTAGGGTGTATATAATGTTCAAATTACTGATCTGAAT-----GACAATTACATGGACATGT--GTTCCCTTCAACCATGCTAAACGTCAAAGATttaggaatccataccactcttgactagggctgaagttcagttcccagcagccatgtaggatatttcactaccgtgctgtatgaaccacgcccagg------ggtctcttgtaccc-----ttctgaagtcttcaggcactgaactcacatacaaagcacatttatacacataactaaaaaataaaaTGATTTATAAAAAGTTAATTAACATCCACTTGCTATATGTTGAGTCCTATCACAACATTC-TCAGTTCTGTTATCGTAAAGTAAACAGGTCATTGTAATCCTGA--GAGGAAAGACTATTATA-ATTAACTGTTAGCAAATGTAACACTGTGATACCCAGAGCAACAACAAATCAAAGCAACTCAGAATTTTATTTAGCGACACTCATTCTCCAATTTATTTCAGAATGTATTATATGCTTATAAAACACGTCCATTAGTTCCAGAAGT---ACAAAAGGCAAAGCTATGGCAAATACTGAAG---ATGTTTTACACAACTGTAGCATTAAAACCACAGACTTTGACTCTTTTAAAAATCAAAGGGAGAACAGAATGTGTTAATCAGAAAGAATCAGTTGACACAATGTTGTTCTTGCTAATTAACAAGGGAGTGTTAATGTGGCATTTAACACTTAGATTTTAACTATTGAACAGA---AAATAAGCTGGGAAAGA----CTTCAGCTGTAAAAAGGACTTGTCAAATGTGTGCACATGATCATTCTT-GCTCTGTCACTTTCCCAGTCAGGACCAGTTAATATCTACCACA-----TTCAGCCACAAA--CTGATCTCATTTAGCTCTGGCACGTGGGGCTCGACCAACTGGGCCATGGAAGTAAATGTGTCTTGATTGATCCATATTAATAATCAATAGCAACTTCATACTTCTTATTAGTAAATCAGCTTAGAAAATGCTGGTTATCCTATTTCTTCATGGGAAAGCCAACACCATGATAGGGCCTTTAATGTTGTGT----------------------atatgttaaaggctgtgccactaaattgt---accagtgggaagcaatgggacct-taggaaacgg---------aaggaagttcgatcactgggaacgtgaccttgaaggtgatattg----aggggctagttcttccctgtttctcttcttgcttcccagtgaccatattgtgaacagatttga---------------tgtcatg------tgtccccacatagactgctatgtcaaaacaac-acatttaagagaccatggacagaaagctttaaaaccatgagccaaa--tgaaccatttctcattttaagtagcttcgctagggcattttat-cactagcaaggagctaacGTGGTAGCATTTAAAGAAACAACGA
s HiC_scaffold_1 135168318 1575 + 233722169 atagaaAATGCTAAGCATTGCCATGACAAGAAG-CCACTGGAATGTTTGTAAATTCTTAAAAGTGTAAACCAGGGCATCTACTTGGTGTGTGGATGTAAAGGCATGA--ATCTCACAGA---------ACAAAGTAAGCGTGGCACAAAATTCCTTCTATGTGATTCTGCTTTTCAAAAATTagcaaaattaaactaaattctcttttttggtgaaGAAATGGAGTGTGTTTAGGAAGACATATGAAGGGG-TGGTTTTGGACACATAATATTCGAAACACTGTTCTTAGTTTTAAAACAGTTGC-TAGATGTGTTGGTGCCCAtc------tttaggaagctgaggcaaaagaatcaccaagaatttgaggccggcctgaactaca--tagcagaaacc-----------------------ctgtctcaaaaacgcccaaataaataaataaatagtagccCATGCTTATGAAg---------------ctaatatgtaa------tttttatgtacTTCTATAAAATG------TCTATAA----CTAATAA-----CATTTAACATATATTGAGTTCCACTGCAAAATTCATCAGTCCTTTTATTATAAGACAAACAACGTATAATTACCTGGAATGAAGAAAGA-TATTATACAGTaatcatggaaaaataaagaagtaaaacattTGCA-----AACAACCAAAAGTAGCCCAGAATTTCACctgaagaca----------------------aaag------------acaaagttGATCAGTTtattcaagaaatgaaagaaaaatcaaagctaAGGCAAACACTGAAGTAGGCATTTTGCA------GAGCACAAATACAGCAGAATCTGATTCCCTTAAAGAC---AGGAAGAGCAGAACTTGTGAATTTAAAAGAATCAGTTGAGACATTGTTGTTCTTGCTAATTAACAAGGAAGTGTTAATGTGGCATTTAACACTTAGATTTTAACTACTGAACAGATGCAAATAAACTGGTGAAGACTGGCTCAAGCTGTAAAAAGGCCTTGGGAGACGTGTAGAGGGAATCATTTGCAGCTCTGCCATTTCCCCATTTAAG------CAACCTGGACCACAACCCTTTCAATTCCGAACTCTGGTCTCTCTTGGCTAT-TTAGATGGGGATCA-------GAACCA-GGAGGTAA----GGTTTGCTTTGCCCAAATTAACCATGAACTGTAGTTCTAACCTTGGTATCCGT---TAGGCTTGGAGAA-GCTTAATGTCTT-TATGTCCACGAATGAATCTGCTTCATGGAAAGGTGGTTGCTATGGTGTGGATAAGCGTCCCCAGAGACCCATGGGTTAAAAGTTTGGTTAGAAGTCTGTGACACTACTGGAAGGTGGTGGAGTCTGTAGGAGGCAGGACCTAGTAGAGAAGCTTCG--CACTGGGGACAGGCCATTGAAGGGGATACTGGAATAGTGACTGAtcccttcctgtttttctt-ttgcttcctggccatcatgagGTAAGTATGGTTCATCCATCACCCACTTCTGCCATGCTGTATTGTGCCCCAACAGAC-------CCAAAGCAACTGTGTTAAAACAGCCATGG-CAGGAACTCTCCAAAACATGAGCCAGAATAAAACTATCTTCGTTTTTAAGTTACTCCTTTTGGGTCTTTTGTCCAGTGAAAGGAAGCTAACACAGTAGCTCTTAAAGAAACAAGGA

a score=80977
s chr3           148487498 3822 + 160039680 AGACTAGATGAAGGCTCCTGGATACTTCTCTTCCTCT--------GCAACCCTAAAATTAGATT-CCCCTTAAAATTGCTTCAAGTTGGGATGAACAGCCAAGCCTTGGTGCCTCCT--CCCTCCCTAA-------------------------------TGAGCAG-----GTCCCTGGGTGGGAGTACTCTGCCTCTGAGGCAAGCTTGAAAGCAGACGAAGGCTGAAGAGTTTCGGCCTAGGG---CCCCAATGTCTGTGCCAACAAAAACTCCTTCTAGGGACACCTGGGCAGCACATCA--GTCTCTACTGCAGAATATTTCCAGCTATATAAAGAAACACTTTAAGTTATTTCCACGGGGGACACCATTTTCTCAGCCAGAGACAAACAAACAGGAGGACCAG---TCCCGTGTTAGCAAGAGCGATGCAGCTGCATCGCTCTTGCTAACACATGCCATTCTGCCTTAGCACTGATATTCCACGCATGAGGTTATTTCTGCAGCCTTTGCAACCAAGTCATGTTAGAGAACTCTCCAGAAAACAGCTCCCTTTGCCCTGAAATTATATGCCTGTTTTAGTGGAAAGAAGTATAGCACTGCACACACTTAACTGAAAGCCAGAACGGTGATTTTCCTCTGAGAAGGTCAAGGTTAACCTTCAACATCCTTACTCACATGACAAACTGTCTTTAACTTGAATCAGCATATTTTTATTAAGGTCACTTTCACTTTCGAGGTTCACAGAGGGCTTCCAACTCCAAGTAGGTAACAACTACTTAGAAATAAAGTCCCAAGAAAGGCGCAGTTTAAGCTGCCGAAAT--GGCATACCTATTTCAGAAAAGGCATCGTAAAAGAGTTAGAAAAC----AGATTTGCAAGACAGAAACCAGCAGCTTGGCTCC----CAGTATGAATCACTCTTCTAAGGTGCCATACAACTTTTTCGCTGAACGCTGATGTTTGTGGAGGTGTCTACACATGCAGGCACACACATCTGTGTGCACATGCATAGGCACATGCATGCACATCTACAGGCCACCATTCGTTGTAGCTCAT-AGGAATGGTGTCTATAAACAACTGCTCAGGCAGGAAAATCACAGTTAAGAAGAG-TCTATCCTTCTGACCACAGAAGTTCAGCTATGACTTCCTTTAGGAAATAACATTTCTGACACTCAGAATACGGCTATAAGC--------------CAAAATTTAACTTGTCATTCATTT-TGGCGTTGTTAA-----AGATTACACATGACACACAAGAAAAAGCAAGATCGTGGCAAATGGGCCAAGATTCAGTGTCAGCCTG--AGCTTAGCATTtctctccctccccctcccttcctccctccctccctccctccctccctccccccccctctctctctttccTTTAAAAAAACCACAGCACAATACCTGACACATACTAAACGTGGTATACATATTCATTGTATCAATGTTAATATTGCTCCAACAGAGGAAGCCTGTTATCTTTTAGGAGTATGAAAATACTGTTGCCAATTTAAATGTGGCATCGCTTCTAAGAAAATATAATAGGTCAGCTTTCATATGGAGGGCTTGATCTACCCGTAGATGTTTTGTTCCTCATAAGCTTCACAGTGTTTGCCTAGTTTGGATGAAAATATTGCCCGTCTTTGTTTGGCAAAATGCAATTTCTACGACGCAGCAAATACATTGCCTATCTCATATCTTGGTCTAATGAGTGTGTGTATTGTCTTCTCAACACAGGCTCCATGGAGAACATGCATCACCTGCTAGATTTTCACCGAACTCACCAGCACACATTGAAAAGCAGTTGAGAGCAAGCAAGGCTTTCTGCTTGTATTGCTTTCAGCCTCATACCAAATGTG---------------------CATAAAATCGAGTCAATCTGTCCGTTTTACCTCCAAGTAGCTAT-----TACATAGATGAAACCACAATGGGGTAAATTGGAGGAAAGTCAAAAGATTGGAAATTTCTGGGGCGTGCATTTCTGAAGAGAAGTTGGAAAAGCTTTTGAAAGTCAAGAATGTGTGAGAAGACTCTAGTATTAATCATACTTCCCAGAACAAGAGAGGTTGACAAAGCTGCCTTAGGGCAATCAGAGTTATTACTATTTACTTTTCAAATTTATCTCATACTGTCTTGACAAGACAGACAAGATGAGTTGTCTGAACTTGAGAAACAAAGTCTGTTTTCCATCAATTAGATCTGCTCCTTTCTCCCCACTTGAAAAAAAAATGGTGGTTGCTCTGGTACGCTTATTTTTATTTTGACATGAGGTTGGGTGTGAAGTGAGGGTTGGTTTGGGGGATTTTTGTTTGTTGTTTTAAGTTTTTGTTTTTTTTTTTTTCTCTCTCCTGAGCTCCTCA-TTTGAGGCTGTGTCAGGAAGAAAAAAGTGTTATCTCTAAATGAGAAATGCATGCAAGGATCTCTGGAAATGTAGAATTTCAATGAATGTGGTGCTTCTAATGTCATGAGATTCTGTCAAATGTGAACAGAAATTATAGATAGGATTCGTAAGGAAGCTTTTCAAATCAAAAG-GCTTTCTGTCAGCATTTGAAAACAACCTGGTGTCTATGTTCTATGAAGACACTGGCATGTAACCCTGGCCCTGAGGAAACACCCTGGTTTTCTCAGGCAAGTTTAATGAATAGTATATATTTCCAAGTTTGAGCATTTAGAAACAATCTAATTGTGTTCTTTTTCTGATCCACTACATAGCAAATAGGAAAAAAAATGAGT----AAAACAAACATTCATTCCATAGTTGATGGTATTTCTGATTAAAATGATAACGTGTTTGCCTAAATGTtctctctctctctttctctctctctgtctttgtctctgtccctttctctgtctctgtctgtctcttctctctctctctctctctctctctctctctctctctctctctgtctctgtctctgtctctgtctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTAACAAAGGAAAACCAATATGAAAATCTTTAGAGGTCTTTAAATTTCCAGTGGT--GTAATGGGAGGCACAATCAATATTATGTAATAGAACCGACAAAATGTTAAATATGAATCTTTTAATACCCCTTTCTTTCTCTCTGTGGACTTGG-TACGTTTCCATGAATATAAGTATTTAATGTGGATAACGAGCCACAGTGTTGTTCACTTTCGTTCTAATCTTTGAAAC------------ATCAGTGGAAATCAACATTCAAGGGGCTGTGAATG----ACAGGGAATTCTGAGTGTAGTTTATAGGGGTCAGAGGTCAGCCATTCTCTAGTTAGCTGCAATCACCTTACAGCTGCCTTCCTCCTGCTTCTGCCCATTCTGGAATAGTCTACAGTGGAGAAACAGAGCCATGAGCGCAGGTTTGGAAGCAATTCAGAGAGCCCCAGGATGGCTTTGA---CTACCCTGCTAGGCTCACTAACAAATGATTTCGAGG-------------------------------CCATTTTGAAACAAGATTTGAGCCAAGGAAGAGAGGGTTTCAATGAGCCTTCACACA------GGGATTAAAATGTCAAGTTACA-------------TTGACAGCTTCTAGCCAAAGGGCTAGGCCCTTT---GTCTAGACTGTAGCGAAGAA----ATAAAAATGAATGTTCAGGCCGAATTTTAAAGTAGCTGTGTTGACAAGG-TTCCCCAAAG----GAGGATGAGTGTCCCA---ACCTGTTTTCACAAGTTCACATTCACTGAAGTAATTATAGTCCCATCAGACAGTTAGGTACAGAAACAACCTAACTACCACTGAATGCATA--------------AATGGGTAAAGGAA--CAAGTGTTGAATCAACGGATGCTGATTCGGGTGTTACAAAAGAGA--------TTGCCATCCATGGCATGAATTAACATTGCAGACAATACACTAAGTGAAGAAAGCCAGA
s HiC_scaffold_1 135178683 3563 + 233722169 AGACTGTATGGGtgtttaatgttctttttctccatctttttacAGGCAACCTGAAAACTGGACTGATCTTTAGAACTTCTCCAACTGGGGAAGAGTGTCCCAGCCCCTATGTCTCTCTACCCTCCCTGACCAGTCATTTGATACAGGTAATCATTTGATATGAGCAAAATGTGTCCTTGTGCAGGACCACCCTGCAT-TGTGGCAATCCCAGAAGGAGATGACAGCTGAAA--TTTTCATCTACAGAATTCTCAGGatctgaatgaataaatgtttcATACAGGGGCATCTGGGCAGCACATCACGGTATCTACTACAGGATGCTTCAAGATACATAAGGAAATTTCAAAAGTTATTGCTG-AGGAATCATTATTTTCTCAGCCAGAGAAAAGCCAGTGGGAGGGCCAGGTCTTCCGTACTGACAAG------------------CTCTTGAAAAAACATCACAATTTATCCTAGTACGGTTATTGctgttgagattttatttttgcagCTTTTTAAATCAATTCTTGTTAGGCAACTCTATAGAAAACAGCACTTTTCACCCTGAAATTATGTGCCTGATTTAGCTGAAAGAAATATGGTAACGCATAATTTTAACTGAAACACAGTAGAACAATTTCCTTCTGAGAAGGTCAGGGTTAACCTTCGATGCCCTTACTCGTACAAGGAAACATCTTTAACTTGAATCAGCATATTTTCATTAAGTTCACATCACCTTTCAAGGTGCAAAAAGGGCTTTCAGCTCCACAAAAGCAACaactaattagaaataaaatgggaagaaagacACAGATTAAACTGCAAGAATAGAGCAAACC-ATTACCAGCAAGGCTCTCCATAGGCTGTGGAAAGCGCTTAGCTGTGCAAAGTAGAAACCAA-AGTTGGGCTCTTTGACACGAGAAAT-----TTCAAAGGGGCAAAGTGCTTTTTCATCTTAATTCTAACATTCATAgaggt----------------aaacaca--------------------cacacacaaacatatctaaagaagattaTTCCTGGTAGTACACAAGGCAGGGAGCTTATAAATTTCAGACTGTGTAGGTCAGTCACAATTCCAAACTGTTCTATCCTTTTGTTCTCATAGAATCGAACATTGTTTCCTTCTACAAATTCCAAATTTCACATTCACAATATAACTATAGGCACTAGCTGTAACCTCAAAAACTAATTAGTTCTCTATTCATTGCATTTTGAACATCGAGATT----GTGACATACAAGAAGACACAAACATATGGCAAGTGCGCAAAGA------GTCAGCCTGTATgttcag-------------------------------------------------------------atttcatttttatttagaaa---tgcaGCACAATGCCTGACACATAATAGGCATGTAATACATATTCATTGTGTAAATCTTAACGTGTCCCCAACAGAGAAAA-CGGTTATcttttagaaatgcaaaaataatcGTACCGATTTAAATGTTGCAcatgttctgaacaattttaatATGCAGCATCTCATA-AAAAGACTTTATTTAACAACTGATGCTTTATTCTTAATAAACTACACACAA--TACCTAAGTTTAGGGAAAATATTGCCCATCTTTAtgtggtaaaataaaatttttataattcaaCAAACATATTGC----TACTTATTTTGATCT----AGTTTATGTGCTATTTTCTCAATGCAAGATCTGGATAAAAGATGCAGTAT---CTagtttttccatgtatttttttccagaaatggaGA----------------CATGGATTATT-----------TTTCAGCTTTATAACAAATGCATATGAGATCATCTTTAAGAGTCATCAAATTGAATCAATTTTCCCAGATTACTGTAAAGTAACTATTTACGTAAATAAATGTGTTCACACATGGATAGAAGGGGAAAATGTCCATAGATTGGAAAATTCTTGGACatgagtattttaaaacaatttctaaaaGTTTTAGAAAGGTGTATATTTGTGAGGTATCTTT----TTAATCACTCTTTCTA-AACTACTGAGGTTGATAAAACACTCCTCTGGTAATTTGAATTATTactatttgttttctaaaatgtattgGTATTGCCTTGACAGGACAGAAAGGATGAATCATCTGAACTTTAGTAACAAAGTCTATTTTCCATCAATTGAATCTGTTC--TTCCCATCACTT----AAAATATGGTACTTATTCTGTTGCCCTTGATTTTATTATGAGATgag-----------------------------------------------------cttttccctttttttaatctcctttttgagGTACTCATTTTGAGTCTCTGTCATGAA-ACGGAAGCATTATCTCTGCAT---AAATATA------AAACTCTGCCATCGTTGAATTTCAATGAACTTGGTGGTTCTAATGTCATGAAACTCTGTTAAATGTTAACAGAAATTATAGATAGGATT-GTAAAGAAG-TTTTCaaatcaacagctttttctgtcACCATTTGATAATAACCTAACATCCATCATCTAT---CACAGTG------AGCCCTTGAC----AAAAAAATCTTGCTGTTCTTAGTCTAGTGTAAT-AACAAAATGCCTTTCAAATTTCaagcattttaaaacattctaattatatttttcatt---tccattatatggcatatatgaaaaataatggGTAATGAATATAATCATGCATTTGATAAGTGGGACTATTTCTAATTAAAGCAATTGTATATTTATCTAACAGTTCTCTTt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aggaaaacaaatataaaacttttcatatgtttttctttttctaaatgttattAAGTGGAGATACAATAAATATCA---AACAGAttaatcaaaaagataaa-acaaaattttaaacattattttcactTTATCTGTCAGCAcaattacatttctttaaatacaagTATTTAATATAGATAATTA-CAGTAGAGTTGCTTACCTTaagttagttttttaaaacactgaCTCAAAAATCCTTGGAAATCAACATTCAAGTGGTAGTAGATGCCTACCTGCAGATTCTTACCGGATTTTATATCATTCGAAGCGCAGTCAGTTTTTATATAACCAGGCCCACCTCATACCTGTTTCCCTCGTGTtttagtctgtccttgaatattGAACCCTGGAAATGCAAAACCATGAATAGAAATTTGGAAGGAA---AGAGACCCCAAAGgctatctttatttttaacctCATGAGTACAGCAATGAATGATTTCATGGTTACTGATCTTAATTCAGGTCAATGGTTAAACCATTTTGAAACAAGCTTTGGATCAA-GAAGTGCTGCTCTCAACAAGCTTTCATGCAATCTTTGGGAGTAGAAAGTCAAGTTACAATGGTTTGTCTCCTAGAAAACTACTAG-TAAAGGGCTTGGCCATCTCAATCCTAAATTGTAAGAAAGAagttcataaaaattaattttatgaaccATTCATAAAACAGACAAGCTGACAAGGAATATGCAAAGGACAGAAAATCGTTGTTGCAAAGACATATGTGCAC--TCCCACATCCACTTGAAGCGTTAT-----CCTCAGTTGCCAAGATATGAAAACAAACTAAGT-CCAGTCAAGACTTAGTGGCTACGCAACGAATGGATGAAGGAAATTTGGTGTGAATTccatagaatattattcagccattaaaagagaaagcttttttttgtcatttgcagCATAAAGAAACTTGGGGAACCttatgaaaagtgaaataaacaaga

a score=145973
s chr3           148492314 6466 + 160039680 [encoded data, 7181 characters]
s HiC_scaffold_1 135183097 6805 + 233722169 [encoded data, 7181 characters]

a score=8862
s chr3           148505844 307 + 160039680 actctcttccaaaacgtta-----ccaatttcactctcagctcctctgtatgtgca--agtacctactgtctacaccctAAAaaaataaaataaaataaaatCCACATTTTTG----TTTCACTAATCACCTCCTGATGGCTCAGCCAGTGATTCTCCACAGGAGGAGGAAAGGCAGGTGGGCAGCTGTCACTAGATGATAAATCAACAGATTTTCTCAGATATGAATTATTTGTCTACCAGGATGACCCTTTTCCTGGTGGGAGGTCTGCCTGTTTTGTGCGGATAGGAATGCAGGAGAGACTTCTTCAGGGAGAAA
s HiC_scaffold_1 135197016 297 + 233722169 ACTCCCTTCCAGAAAAATATTCAGCCAGTTTCACTCTCAGCCTCAGTGTATATGAGGGAGAGTCCATTTCCTACAC---------------TGCAGCAGActctgcttttttaaaacttt---taatcgACTTCTGATGAGTCTGCCAGGAGCTCTTCACGTTAGGCAGAATGGTAGTTGGGTGACTATAACTAGATGATAAGTCAATAGATTTTTT--AATATG-ACCGTTTATCCAAAAGAATAACTCTGTGCCCAGTGGAATCCTGACTTGTTTCATGCTGATAGAAATGCTTGAGAGATTTctgaagaaacaaa

a score=31251
s chr3           148509591 1346 + 160039680 CCAGTACAGCAACatgaagaggtgcggcttttaggaagtattaataactgtgacatcaagtccttgttttcacggatgggactg-----tccttataaaaggcatgggaggacaatatatttgtctcttgtgcttttgtcttgggagggcaagcactgggtaacaattcaatgtcagagtttcctcacaaggtacctcatctaccaggaatctgccctt-gactttctagcttcca-aaatatgaaaaatgagtttatgttgtttactattcattactcct----aagatattttattatat---atacagtagtagactaaaat-----aGTGGCTTATTTTGTTTTTACACAGGGGAACAAAGGTTTGAACCTAAGACTTCTAGGTCCAAAAGAATGTTTTTCCAGTTCATAATCTTGAAA------------------------AAAAAAACCCACTCCAAATTAGTCTAAACACCCTTTTAAAACAGGGGTGTTCCTTTTCTACTGACTGATGCAGAAAATTTTATCTGAAACAAAAATTTC----AACTGGAGTTTTCTCCAGGTGAATCTTGTACTCAGCCACAAAAATATCAAGTTAAAAAAAAAAAAAAGATTCATGAGTCAGGCAGGCAGACAC-ACCTTG--CCTAGAATCTGCACTTTGAGATGAGAAGCACAAT-TAAATATTAAGAAAGATCTAGCCAGAGATTAATAATAAATGAAAGAGTTAATTGACCTATGCAAAACTTAAAATGCACAAAGAAACTATGAAAGTGTAAAAAGT-TCTCTCTGTTTGTCTTCTACCCAGTATGGTCCCCTCAGGCAGACATGTCATCCCAACACAAGCCTCATGTGAAAGTAGTCCAGCTAGCAATAGACCGTAGACATCTCGATGTGGAAAACAGCATTCAGAAGGTTTTTGATTATATAGGATGCGTAGTTTCCTGCCAAAGTAAGAGA---AGAGGAAGAAAGCCGCT---------CTTGCATAATTACCCTCCCC-ACTAATCAGGAGAGAGGA-GATGCTATCTCTTCCCCTGACCTTTTTATCTGTTTCCTACCATGGTTTGTTTCACTTTCTCAAAACCACAAAAAGAATAAAAAAAGGTGATCAAGGCTGAAGTCCGCCCCTCTGCAGCCTCCTCTGACTTGACACACTTTTTTTATCCTTAAGC-CAAATCATGTAAGAATTCTGTTTAATAAATCAC-AAGTCACTACCACTAATTGCTATGGAAATGCATAGCAAAAAGCTACTTGGTTTAAGCTAAGCAGAATTTGTTTTTTCCTTAAAATCATCACAAACATTATATACACTGATTACAGTTAGCGCTGTAGTTTCTGCT------AAGGCTCTATGGCCTCTAGATTAACAGACAC-AGGAGTCCCAGGATTAACATAG
s HiC_scaffold_1 135198962 1330 + 233722169 CCAGAGAAATAGTATTAAGGAGTGGTGCATTTAAGAGGTG-----AACAG-GTTATGAAG-ACTCGCTTTC-CGGGTGGGATTGGTGTCTTTTTATAAAGAGGTTTGaagaagcaagcacctccctGTTAGCCTTCTGTCCAGTGAGGCCA-----------------------CAGGAAACCTGCACCTA--ACCTAATCTGTTAGGACTTTAATCTTAGACTTCCTAGCTAACAGAAATGTAAGCAACGTATTTCTCTTACTTACAAA-----ACTCCAGACAAAGATATTTTGCTGTAGCAAATATTTGAGCAGAATCAAACCGTAAAGTCACTTGCCTAGGTTTTACCAAAAGGAGACAAGATTTGAACC-AGGTGCCCTCAGTCCAAACCAATGCTTTTCCATTTTGTATCATTGAAATCAGATCACACAGagcagacataaaaaaaaa--------aaaaaaaaaaaaaaaaccttcagaaacaaAACTGTTCCTCT-CTATGACCAGAATTAGCAAGCTTC-CGTGGAACAAAAAATCCCTGTGTCTTGCGTTT-------GAGACACTGCCACTCA--CTCAACAGTTCCAGGTTAAAGACAGACA-------CAGGAATCAGGCAGGCAGCCACTGCCTTGGGCCTAAGTTATGAAGTCAGAGA--GGAAGCACAACCTAAAAATAGAGGAAGATCTAGTCAACACTTAATAATAGATGAAACAGTTAATTGACCTATGCAAAACTTGAAATGCacagagaaattataaaagtataaaaactatCTCACTATGTGTCTTATACCTCTCATGGCTCCCTCAGTAAGATGTGCCATCCCAACACAAGATGCATGC-AAAATATTCCAATTAGTAAGGGACCTTAGGCATCTCAACATGTAGAATAACATTCAAAAGGATTGTGATTATATAACATTCCATATCTGCCTcccaaataaaaaattgaaaggaaaaattctGCTTTTTAACTCCTTGCTTAATTGCTTTCACAGACTAATCAGGAAAAAGAATGATGCTATCTCTTTCTCTAAACTTTTGAGCTGCTCCTTATTAGTGTTTATtt--------------cacagaaagaataaaataaggtgATAATGGCAGAAAGCATCCCATTTCCAATATTCCCTGACTTGATATATCTCTTTAACACTTAGTCACAAAGCATGTATG-ATTCTGCTTAATAAATCATGGAATTACTATTCCTCATTGTTAAAGACTTTCTTAGCAAAACATCCCCGTATTTGAGTTTCACA------ATATTTTGCTTACATGTATGACAGCATATGTGCTAACTGGTTACagttagaatttta--ttttgccCAAAGAAAGGTATTATGGCCTCTATATCAAAACATACAAGGAATTTTGGAGTTGACAAAG

a score=27378
s chr3           148512640 1820 + 160039680 tTACCATTGTCAGTTGTCAGATACTGCATTTGATAATGA-----------------------------------TATCAC-------------ATATACTTAGCTATCTTCTTGGAACTGGAGGAAAAGGGTCTATTCTCCCCAGTTTAGAAAT----CACA--ATTTAGAAGTGCACATTC--CCTGGATTCTACATTCCAGATTGGAATTGGAAAGTGCCATAAGT----CACA---TCAAGAAGAATTTAGAATCCTCTCTCGATCCCTGCACGGCACAGCTCCTGTTCATTATAACCAATCTGCATGTCGTTTTGCATTCCTGAGTTTGGTCCAAGTTGGCCTCCTCATTTGCTCTTTTTTCCTTTTAAAGAGATAAAACAAAA----CATGCCCTGTGTCCACATGACCTGCTGTTCTCCGTCTTCAACATCAGA-ACCGTCTCTCTACCTGTCTTAATGTACACCATTTTCCTGCATTATAAAACTACCTCCTTTCCCACTTTCTATGATAATTTAATCCCACAGGTCTCTCCTTAGCTTCCTCAATTAACCTTTCCATATTGGCTCTTACATGTCCATCTTCAGAAAGACTCA-GTTGCTCCTACTTTTAAATAACTTTTACCAACTGTGCTCAGTTAATTTAGAAATAACCTCTTTCTGATAATTCTAAATGTCA-TTTTCTGACTGATCTC-ACCCATTCCTTTTCTGAGATTCTTCTCTGTGGTAGCTTCTGTGCAGATGAACCACAGTAAAATCATTTC-----------------------TGCTTTCCTCTCTTCGGAA----AGCCGTTCCTCTGCATGTTCCTCTGCCCTTCCTTAGTTCCCCATTCCATACTTATCTGAGTCTTTCAGTGACATAAATCT-TGCCTTCAGCCATTCCTTTTATATACAGGTGAGCTGTGATGTTCACAAAAGTCCAACCTCTAAATTTTTTTTTTTTGGTGCATTTGTGGTGAGAACCTAAAGGTTTCTTGTCTGTCTTCCTTCTGGGATGACTAGTCTACTGCCAGTTAATCCTTGCAGGCATTGTGAC-------CCTTCAGTAA-------ATGCTCAATAGGTCATAGGT---GGGAGAGGCTAGAAAGCATTA-GCCAGTA-----GGTTTATTTTGTTTTCATTTCTCTTTTAAAATAGAACCTGGGAGTTGGCATCTGTCAATGTGATTGTATACCAAGCTGGCCA-AACACTATTGTTT--TTACACTTACCTAGAGTAGATGTTGCCAGGTAGGGTGGAGATATATCAAATAGAACATGAAAGTGAATTCTGATGACTTTAGAGGTGTCTATCACTTTATTAGCCGTGACGTGCATGTCCTTGATTTACGGATCCTAT-------------GGGTGCCTAGGTCTGGGTGTCTCATAATCCCTTCCAACCCAACACTCCCATGGTTGACTTGATCTCAGACGC------TTTATCAAATCCAAGTGTCCTTGCATAGATGGAGAGAATCCTAAGCAGGATAGAATGGTGTACCATGCCCCCCCCCCCAGAAGGTTAGGCTCAAGGATTCAG-CAGAAAGTCAGTTTCACTACGTCCACTTCCACACTCTGCCCAGACAG--------------------TGCAAGGCCACCCTGCCTTCTCCATTCTC----CTCTTTCTCACTGCACCATGCTTTCGACATGCTATT--------TTCCACAGCCCCCTTTCAAGCATTGTCTTTACT--CTCCTCTTACCCAACAAAAC---AATCCTCAAAGTATTGCTATATCTTCTTTCAGTAATTCCTCTGCATTTTGCTAAAATATAATAGTAGATATTAAGCCTTTCTTCTCTTTTGTCTTAGATACCCATTACCATCCTTT--ATTCTCAATTTCATAGCA-----GTTTCCCTTAG-GGTCATCACTCCT---TATTATTCTCTAACTT--TTATTGCAGTACCTTTCTACCTAAATGCTTACTGTTAActctctctctc
s HiC_scaffold_1 135201243 1859 + 233722169 TTATCATTGCCATTTGTTAGACATTTCATTTGATAAAGACAATGTCTTTTGTGTTCTGGGTCTGCAATTCTTTATATCACTGTAGCTACGCAAGTCAAATTAGTTGCTTAATTGTTATTGGAAGAGATGGATGTGTTTTAAATGGTCTAAAAATATATCATGGCatatataaatttttcttcttcctggattccacatttgtttttgtaattgaaCACTGCCAGAGATTGATCACAAAGTCAAGAAGATTTTATAATCGTCCAT-GATCTATTCGCAGCATAGCTTTAATCTATAATAATCAAtatgaatgttgttttccattcct--------------------------------tttgtgttattttaaagaaatgaaacataaagcatgtgtctttttttaatcAGGATAGCTCTCATCTTTCCTT----TCAGagaaagtttccttttctgtctgaATTTGCTGCACATAGCCGTACTAGAAAACTTATTCCTT-CCCACTTTCTATGATAATTTAATCCCAAAGGACTCTCCTTAGCTTCTTCAATTAACCTCTCCATATTGGCTCTCATGCTCCCGCCTTCCAGAAGGCTCAGGTTATtcctattttaaataaacttctgCCAATTGTGCCCAGTTAATTTAGCAGTAAACTCTTTCTAGCAGATCTAAATGGCATTTTTCTGACTTATCTTGACCTACTCCTTTATTGAGATTTTTCAATGT--TGATTTCTGTGGTGATGAACAATCTTAAATTCTTTTCCAACTGTTTTTTCTTGATTGACTTCTTTTAATCTGTTAAGAATCTCAATTGTGCTTCT---TGGGACTCTG----TCTTGGGTTCTTCATTCATCAATCTTCTGAGTCTTTCTATGACACAAATCTCTGCTTTCAT---TGCCTCTCCTATACAAATGAT------TCCTCACAGGAGACAGGACTCTAA-------CCTTGTGGACTGCTCATGCAATGGACCCACAA----------TAGATCCATTCTAAG-------GTCTCCCACCACTGACTCATCCCATCCATGaggactgaggatcctttctcCATTCTCTTGTGTTC--TGGCTCATAGATATAAAGAGGAAGAATAAAGGATTGTGCCAGAATTTGGTGTTTCTTTTGTcttcgtttttgtttttataccCAACTCAGAGGTT-GCACCTATTACTTGGGGCCGATATAGCATTGGCCATGACTCAGTGGACTGGTTACACTTTCCCAGAAGAGAGACTTGCACATAGGATAAAACGATGcccaggagaaaatgaaaatg--------tgcctCAGGGAATGTCTGGCTGTCTCT-----------------GCCCAGATTCACAGCTCCTGTCACCAGTGCTCCACACTGTCAAGACGTGACTTTTCCATGTTGTCCGCTAGCCACACATCTTCAGAATTAACTTAATCATAGGTGCATATGTTTCATC--ATCAAAGGGAT------TAAATGAAGAG---TTTAAA----------------ACCAT----------CCAAAGAGTTAGTATCAGATTCTAAGCCAGAAATTAAGTCTCCGAATCTCCACTTCCATCCTCCACCCAGACCAGCACCTGAGCACAGGTTTCCTGCACTCCcagcctctctcctcctctcacaatgctttcccacacttcttccctccttctcctcacTCTTCTGTCTAGTTCTGTAG-TCTCTTCCTActgttatctttatttctccctctttttcaaAATGACTTGTATCTGCACAA---------ATCTTTATTCA-TCCTACTCTGGCATCAAGCTAACAACTCACAGTAGCATTAAagtctttcttctgtttcatccCTGAATACAGTTTCTACCCTTTCACTTttagattttataatatttttgtttttcttatcatttatcACTCCTGGATATTGTGCTACAACTTTATTCATACAATGTTTTTCTATCTGGATGCCTaattttcactttcaatttc

a score=28195
s chr3           148524892 952 + 160039680 ATGTTTGATAGCCATGGAATTCCATGGGTAGAGCTTTGATTTCTG-TCCATGTACCCAGAAGAGATGGAAACCATGCCTAAGTTGATGAGGACTGAGCTCAGTATTTCTCAAGTCTCAAGACTTTGGCACCAACTTCAGGATCAAGGATTTCAACATTGTTTGACCCGAAAATACCTTCCTGCTGAAATCCTGCCTCCTTTTACAGAAATGTCTGTTTCTAAGTCCATACCACCTGACAGCATTCCCTTTCTTCTCCAGAAGCTGTACACCCTTCATATCTGGAGGTGGATGTCACAAGTCTCCAACTCAGACTACCCCTA-TGCCTGCAGTTGCCTGATGAATATTGATGGGACACATATTTCTCTTAGTCATTTATAAGATCTCAAGTAACAGATGAATTTTTCTACCCCTGCTGCTCTCTAAACTTTAGGAAGTATCAAGTGAACCATTAAGCATCTCATGATATTCAACTTGGGAGACCACGCTGGGAACAGTTGCAACTTAATGCCTTTTT-AAATATACAACTGTGGGCTGTGTCAGATCCCATCCTATTACATTTTTCTGCCATTTCTTTTTCATTTTATTGTGCAACTAATTGTTTATTATCAGTACTTTTCCTATCAAATAATATTAATTATGTTATTGACATGAATTCTTTATTTCTTTTTATAAAGTTTGTAACATTTACAAAAATCTTGGGCCGTATCTTGAGAG-GACAGCAAGGTCTCTGACTTAGCCTGTGCCAACTTGTCATTGTGGA-ACCCTTGCTGGGATCTGTTTGGGCATTTCTCACATATGTAACAGT-----GAATGCTGGGTTACTTAGTAACTGCCTTTTCCTCTTTATCCTG-TAGTTTTATGTAATATATAAAACTAGAAAACAAATGGTGCTATTCTCAATATGGATCAGTTTTCTAGGAAATTTTAACAGGCTTTTATTCCTAGCAAAAAATAT
s HiC_scaffold_1 135209210 918 + 233722169 ATGCTTGATAACCACAGGCTTCTCCA-------CATTACTTCGTGCTCCATG---CCACAGGATGGGGAGAACAATCATTGGCCAATTATTGCAGAATACAGGCATTAACGA--CTCAAGACTACACTTCTACTTGCAGGACCCATAATTTCAATATTATGTGACCTGAAATT-CCTTCTGGCCAGGATCCTGCCTTCCCTTCCAGGGG-ATATGGTTTCCCTCCTGCTCTAACCAACAGCATTCTCTTCCTTTGTCAACAACTGCACATCCTTCAGTTCCTGAGTCGGATGTCACAGGCTTCTGACACTAGCCTCCCATGCTTCCTGTAGATGTCTGGTGAATGTGAATGGGA-ACATATTTCTCTCAGTCATTTAAAAGCACTCAA-TGACAAATGAATTTTTCTACCCCTGCTACTCT--AAACTTTGAGAAGTATCAAATGAACCATTAGCCATTTCATGATATTCAACTTGGGTGACCATGCTGGGAACAGTTGGAATTTAATgcccttttaaaatatatggttATGGGCTATGCTGTATCCAGTTctactatattttaataaaat---attttcattttattatgccATTAATAATTTAGCATCCTTATTTTTATCATCAGATTAT----ATTATGCTATTTttacta-----ttcttatttttaataaaggttataaaattaat-aaaatctttgACCCTACGTTGAGGGTGCCAGCAGGGCTCTTAAATTGGCCTCTACTAACTGGTCATTAAGCATACCCTTGTTCAGGTCACTTTGGGAATCTCCTGCTCCTGCCACTATAGTCAGTGTGTTGGTCAATTtagggtattttttttctctttcaatctgaaaattatatataatatagaaaacCTG-AGACACATAATG-----------AAAGATTAA--TTCTTGGTAATATAGAAATGCCACCATTCTTGGCAAAAACTAT

a score=33898
s chr3           148527059 1869 + 160039680 GTAATCTTAGGTATTCTTTCTCAATGTTGTGGCAAGAAGCaatttaattattaa--aataaacaaaaatatcat-----atataCAATGCTATAATCAGAAATAAA-----------------TATGTAACCCTTTGCA-TCCTCTATCATAGTATTCCACTGAAATTATTTGGTATTACCTATTTA------AGAGTGCCAGTTCTTCCTGGATCTGATTGTTAAATTAAGCCTTAACATATATCTGTCCAAAGGAATACAAATGGATCAAAGTAATTTTTTTCTAGCCTCTCTAGAAAAATAAGAAATGCAATGAAATC--------CTTCAGTTAGCACATGCCAGGGATCTTTC-ATTTCAGTGTCTAGTGCCCTTTTGGCTGCAAATCGAG-AACTACCAATACTAATTAACAAACAAAAACACACATCTAATGGGGTTCCTAAAGGATATGCCTTAGTGTAATGAAGCACTTTGAATTTTAACAGAGCAACCAAAGATAAAAGAACATTGTCTCAGCCTTGTAATTGATCATTTTGTCCCCTACCTTCCCTTACACAAAAGCCATGCTTGTAAAGTGTTTGCTAAAGGCCATTTGATTTTCCTCAGATGTAAAAAACAGATCTAATTAAAA------AGCACACTTAATTTATAATAAACCTCCATTCTTAGCATGCTTTGTGTGCTTTTGAGAACATTTTTGCTCAGATGTGGGTTTCAACTCTTTGAAATTGTATGTAATAAAACCGTTAAGGTGGTAATATTTTCATTTAAATGGTTCTAAAATATCCTGT-------ATCTAATGT-TGCATTACTGATATATGTGTGTTCAGTGCATACATGTATATGTATAGATGCATAAAGATAGATATATACATAAAAAGAATTAGGAACCTCACTAAATTTCTATACCCAGAGATTCAAACATGTAAGCATCTCATTTATAAATGTCACTGAAAATCAGTCACCATTTTCTAAACAAAAAATCTTGCAAGAAATC--------------CCAATTTCGATAGTACTG-CTACATCATTATCCTGGTTCCAGATTATATACTTAatatatatatatatatgtatatatatatatacatTTACAAGACAAGCATGGTGGCTTAGAACTGCAATCATACAACTTCAGTGATCAGAAAGAAAGATTGGCTTGAGTTAGAAGCCAAACTCAAAAGGGAAAAGAAATGTATTCACAGTATAAAACTGATGCCTAAGAAAACGTATTAGGTACATTTGTATATAAAGCAACAGAGACTACAACCAGAATAATTGACACTGAAAAAAAAAATGTTTATATACTGTTTGATTTTTCTCTTCAATTTAGAACTTCCAAAGTGTAAAATAGATACTTACGTTAACAAACAGCAATAAGATGAAGCAAGGCAGAACCCAAATACAAAGATGCCAATACAAAGTACCTCTGTGACACTCACAGGGAAAAGGAAGCAAACCT-CACTGGACAGTCA----------------GAAGCTTATC--TAGGGTCATGGAGTGGTAAGAGTTAGAAGTCACCACCAGGTTC----------AATCAGTGTAGCAAATCTAAATCAGGGAACAGAGAGATGTAGAAAGG-ACCAGGTAACTTTAAGCAGCTAGCACATGGTAGTCTCAAGAGAATGGAGTGAAGACACACAGTCCACAACATCCGCAACTCCCCCTTCTCCATTGG-CAAGCTT-TCTGGGAGTCAAAAAGAATCAGACCACACATAAACTCTTTTATTAAGTAGAA------AGAGAGGGTATCTGAAGGAT--------------ACAAGATACAGAGAACAGGATACAAGGGAC------AGGATAGCCTATTGCCAAACTAAGAAA------GAAAGACAGGTGACTTATACAAAGACCAAGAGAAGATAGCCAGTTATCAACTAAGCAGGCAAGACAAATTCATAGCAAGTCATCCTGCCTGCCACA-GTAGGGACAGGACAG
s HiC_scaffold_1 135210879 1749 + 233722169 GTAATCATAAATATGCATT----ATATTG------------ATTTAATGTATAATTGGTTAACACAAATATCATGTCATATTTGAAGTgtgatacttaaaaaaaaaatctcagttggGCCTGGTTTGTGGAATTTTACAGTACTCCATGATATTA--------AATTTACCTGGTATTACCTACCAACAGCAGGGATAGCCAGTTCTTTGTGTACCAGGATATTAAATT--GTTTTAAcatgcatattcccagaa-aatgCATCAGCatcaaaatattctttcttaaaactttctagaaaaataggaaatataataaaattagctTTGATTTCTACTAGTACATGTCACACAAATTTCTGATCCAATGCCTACCATCCTTTTGACAACAAATTGAGGAACTACCAACACtaattagcaaataaatatacacatcTAATAAGACTACTAAAGTATATCCTGTAGTGTAACAGAGCACTTTGAATTTTAACAGAGCAGACAAAGATAAAAGAATGGTAT-GCAGCCTCACAACTGATCATTATGCTCCATACCTTTCCAAATA-AAACACCATGCTCGCTAAATGTTTGCTAAAGGCCATTTGATTTTCCTCACATAT-GAAAACAGATCTAATTAATGTCATTTAAGGCATCTAATGTCTAATAAATCTCCTTTCTTTGTAAGTTTTACA---TTTTGTGTATCTTTCTACTTAGGTTTTGATTTTGAACCTTTgaaattttaagtaataaaagattttaaacagtGTCATTTCCAGTTAAAATACACCAAAATAACCTATCCTTTTAATCTAATGTGTGTATTAGTGATA-----------ggggtatatatttat------------------ttaaacataaatacaaaCAGCATGAGT--CCTCACTATACTTCTAT--TCATAGGTTCATATATGGAAGcctcttatttataa-----aatgaaaaccaggcattattttctaaacagaaaatactgaaagaaaactgCTTAACACAGATTGAGATTCTACAATATAGATTACATCATTATCCCAGTTTCATGTTGTACA--------------------------------GTGGATTTACAGGTGAAA---------------------------AACTCACCTACTCAGGAACTAATAATTAAATGAG--AGAAGCC---------------------------------------TTGAAATCTGAGAAATCA----------ATTCG----------------------------------------------AGCAAACGTTtacatattatttgatttttcatatcaatTTGAGACCTCCTATATGTGAGACAGgtatttatattaatatagaGAAATATGGTCCAGAAAGATAGAATCCGAGTGCAAAGG---CAGTGCA---TCTTTCCATGATTCTAGCAACACCAAGGTACCATGTATAAAATTGGCAGTTAAAGAAGAATCTAAAGGGAAACTTTTCATAAAGATCATGGGCTGGCAACAGTAGGGAAATACCAGGAGGGCCGCAGGAAAAGACGTGGGATTGCTCACTGGAATGAGGAAACAGAGCCAGGAGGAAAGATACCC--TAACCTAACACAGCTAGCCCACGGTCAGCTCACATAAGGGGAATAAGGAAAGACATTTCTCCTATTAGGTGCTTTCACTCTCTACATTGGTCAAGCCCATCTAGACACTGGAGAGCATGGAACCACTGATAAAGTTCATTATTAATCAGAGCAGGGTACAGAAGTGAGCAAAAGAATCTACCGGCTTGAGCAGAAGATACTGAGCacag-----aagagacctgaaaaaggcAATCCATCACAGGACCACAAAACTGGATAAAGGAAACAAGGTTTG---------CAGGGAAAAGCACTAAGATGTCAACCAGGCAG--AAGATGCATTC----CAACTCGTCATGCTCTCAATGTGTGTGAACAAGAGAG

a score=28137
s chr3           148529730 1046 + 160039680 ATGTCTTCATTTCTCATAACCTACCAATGAAGATGTCACGATTACAGCAATTTTAAATGTATGAAATCTATGATTGACATGGGA----AACGTTCCCTGCCTCTACTCTAAGCACACCTGGGTATTATCTCTGAGTTTATCTCTGCCAAG------TAATTCAG----CCTTTAAACATAAGGAAAGATTTTTGGTGGTATATCAGCACCCTGGCCTTAAGGTT--TTCCTGGCCTGAGAAAACACTATGAAAAATTGTGAGAACTT-CCAGAAATTTCTGTACTT--TGTCTCACCAGGGTCCCTGGAGA---TGAACCCACAGCCTTGGCTGCTTAGTATGCCCAGACACCTTGGGCTAGATCTCTGATTCTTC---TCCATGTGGAGCCGACTAGGGAGGTAATCCAGGCATATAGTTTTACAACACATGTGGAATCGGTTAGACAATTCTACTTGGACCTAGATAGTAATAACTCTACTTTTCTTCCAACTTAAAATGGCCATCTGGGGGTCCCACAC----------TTTCCAAACCTATTTCCAGCCAGCTTACTTCCTAGTCTTTG--CCACATCAGTTCAGTTCATCTTATCCAATCCTGTTTATCTACGAAACTAATTGTATACTCTACTGCTCCAGCCTTCCAGCTTTTCCCTGAGCTTCTCCAGAAATGACCTCAGCATCCTCCCAGGGTTTCTACATGATAACAGCCAGCATTCACAGGAAGGGTCATGGCCTGGACTAAGGATCAAGACCTGGTTTGTCTCATGAATCTACAGATGGATctatgaggtaggtatgataattagcctcattccatatctaagtaaCAGGAGCTT---TAGTGTA---TTCTAACACCAAGACAACAGGAAATATCAAAGATAAGCTGAAGGCTGGAGAATTTAGT-------------GTGCTTAACCATTGCCCTCCGTTGCTTCTCAATGCTTTAAGTAAAGCTCTACTCTATACTCCCCAACCCGATTTCTCTGAACCAATTGGCAGA-------------GCTCCCATTCTCT-TCACTGTCAGGCTTCCTCCTTCTTCCTTCTTTATTCCTTCCCCCTTTATCT----GCTTGTCTGGCTGCA
s HiC_scaffold_1 135212881 1097 + 233722169 ataccaCTAATTCTTACAACCTGTCAATGAGAACATTCTGATTATACCAGTTG-AAAGATGTGGCATTTGGTACCCATAGGGGAGCCTAACCCTCCAT-CCCCTATTCTAACTGAACGTAGATATTA-CACTTAGTTTCTACCTGTTTAACCTTCCTAGCCCAggattctttttaggttaagccCAG---TCCAGTAGTGAATGAGAACCCCGGCCTGACAATTGTTTTCTGGCCTAACAGGATTAGACGGAAACTCCTTTCCCCTTTCCAGCAGCTTCTGTAGCTCCTGTCTCCCCAGGGGCCCCGGGGACAATGAATACACAGATTGTGCTGTTTAGCATGCCAAGtcaccttct-ctgcctctctcactCTCCCACTACACTCTGAGCTGG---GGAAAGGACGCAAGGCATATAGCCTGACATTACGTATGGAATCCATTAGGCAATTCTACTTGGACCTAAAAAATAATAACCCTACTTTTCTTCCAACTTCAAATTGCC-TATTGCAAtcccataccttttttttttttccaaagctaTTTCCAGCAAGTTTACATTGTAGCCATTGTACCATAC-------ATTTATCTTATCAAATCCCTTTTATCTCCAAAACTAATTTTATACTCTGTTGCTTTGGTTTTACAGTTTTCCTTAGAGCTCTCCCATACATGACCACAACACACTCTTGAGATTAAGTAATAATAACAGCTAACATTTAGAG--AGGGTCATGCCCTGGACTAAGGCCCAAGACTCGGTTTATCTCAGGATCTTCCCAGTGGATCTATGAGGTAGGTACTATTATTAGCCCCATTTCTGAGCTAAGGGAAGGCAACTTAGCTTGAGCAGGTTTCCATTATTGGCACAGCATGAAGTATC-AAGATAAACTTCCAGCCCAGGAATTCTGGCTCTGCAATCTGAATATTTAACCATTGCCCTCTGTTGCTGCCTGTCTGTTAGATGAAAACTGTTCCCTCTCCTCCAC--CCCTGCTTCTCCCACACAACTGGCAGAGACAAGAGagctggctctctctctctctctctctctctctctctctctctgacacattctcttgttctttttttatttcaaaactttttttgctgta

a score=45561
s chr3           148531935 1682 + 160039680 TCATCAAACCTAAGCATAAAAGCTGTGCTTCCCGAGTTAGACTTCCTTGTGTCTTACATCTCTCCTGTCA----------TGATCAGACAAATCTGTGATAATTTTCTCACGTTCACCCAACTCTAGTTATGGAGACG-CTGGTGCAAGCAGCGTAGAAGAGAAAGAGGTG-CACACATT----CACCAAAGC----CAGAGTCTCCTTCTTTATTGTAAGTTATATTTAGATATTGTATGACCAGTATCACAAAATCGTGAACAATTTCCCCAAAAAGGCCAAGTAGGGAGTTGAT--------------ATCATGCTCAGCTTTGTCAAATCAATGAAGTCCCATGAGGTAATTCAATGCTACATGCAGAGAAATGGGTGGTAAGTGTGACGCACGGCATGGCACTCTTTACCACGGCTCGTCTGGTAATCACCAATCAGACAAATAATGAATAATAAAATGTGCACACGCTGAGGACTCCATGTGTTATTGATCGTGAAATTAAAACAAAAAA-ATTCGAGTCCTAGAATTATGGGGGAGACTGGTTTCAATATTGAAAAAAAAATCAAGCCTTCTTTAGTAATAATTAAAGAATTCTGTGTGGAATCTGAGACCTGTAGGCAAAACTCATATTATTTGAGTTCTCAATATAATAACGTTTTCACTATAATAATGTTTGAAATAGCAACTAACCAAACTCAGATGTGAG---ACTATGGCTTCGAAAATAGTAGACAAAAGAAAATG-------TACAGCGTACTCCAGGGGAGATAACAAAATGCACCAGTTTCATTTCAGC---------------AGGCATCTAT---------TCTCTATATTTTCTTTATA--TCTCATAATATATCCAGAAAGAGC-------------GCCCCACCCTGAGTACTGACCGAGATGATTAGGTGCAGTT-----CTTTATAATTTTGTCTTTTTCAGCTCTTATCTCAAACTTGGCATTAAATAATAGATTTTTGATCATTTCTTTATGTTGTGTCATATGTAATTGGGATAGGTA-CTCCTGGGACAAT-GGGATAGCTACAGTGACTATGAAGTTGGCGATATCAATTTTGCAGTCAGACTGACATTGAtttaaaatacattttggactgatgaaaagtagtgtatt--cagaccctgagactgaagctctctggatctccactaaacaaaacatgcctggggaactgcagggcCCCATAAACATAACTCCACTGCTAGCAGATGTTCAACAGAAAGACACATGTTTGTGTAGCTACAGCAGAAAGAGCTGCATCTCCGGAAAGACATACAGCATTTAGGAATGGAGAGAGGAAGTGAATT--------CTGCTAGATGAGCCAACCCA----AAACATC----ACACAGAGATAATTTCAAGTCTCT--------TATTCCCCCTTC---AAATGCCTAGTTGTTGttttttttttttttttttaataGCTGAGTTTTCCTGGAAAGTTAGCTTTATCCTTATTCAAAACTTTT--CTATCTTGCTAACTTATAATATCAGGC--ATTTTTATGATAGCATATGATCTAGTAAATACAT---CTAAGGGGCTGTTA--------GCCTGACATTTTACAAAATGCCTTCTCCCTGTAAGGTTCTGAAATACGGACAAAGTTTAACATGATAGGGAAATATCCACTACTCCATGGATGGCTAGAGAAGTAATTCATTTAGTTCTAGAATGTTCTCTGGGTTCTGAAATAAATATGATGAGCATCCTGAATTCAGAATGGAA----------CCAGTATCAACAGCTGTgggactga
s HiC_scaffold_1 135215210 1753 + 233722169 TCATCAAACCTAAGCATAAAAATAGTTTTGCCTGAGTTTCAGGTCTTCGTTTCTGAAGGGCCTCATGTCACATAAAACTTTAGtca-ataaattttttata-ttttttcttcttaaccTGTCTTCTGATACTGAAGTGTCTAGTATAACCCTTATAATAGGGGAAAAGGTATCATGACTTTCTGCCCCTAAACAGCTCTACATTTTTCTCTCTAATTCGAATAGTATTACAACACTG----ACCAGTGTAACCATGTTCTTCACAATATCCCCAGCCATACCAATTAAGAAATATATTATCAAGCCCTCAAATTGTGGTCAAATTTCTTAATGCAACAAAACCACA---GCCCACTGAATTATACATGCAG-----------GCACCTATTACTC----CGTGAAGTACTTTCCCACTTCTAGTCTGGTTGATAGTCAccagagaaataataaataataaaatgt--acacTCTGATGACTACAT----TAGTGA-CACAAAATTAATACCAAAGATATTTGTGTCCAAGAAGTACTAAAAGGACTGGTTTCAATATGGAAAAAA---TCAAACCTTCCTCAGTAGTAATTAAAGAATTCTGTGTGGAATCTGAGACCTACAGGCAAAA-TCatattatttgagttttcattatAATAGCGTTTTCACTATAATAATGTTTGAAATAGTTACTAACCAAATTCAGATGTGAGAAAAAAATAGCTTCAGAAATACCAGACAGAAGAAAACGAAAGATTTGTGACATGCTCCACAGAAGACACTGAAATTTAATAGTTTCACTTTAATATATATGACAACATAaagcatatatgtgtgtgtgtatttcttttttcttcatactTATGATGATACACTCAGGAAgtactttttttattcttttccctctATGA-CGGTGGCTAGGATTATTCTTTTTGATCTCTGGTTTTGTAATTGTGTCATTTTCAGCTCTTATCTCAGAGTCAGCATAAAATAATTG--TTGTGTTCACTTC-TTATGGTTTAGCATGTGTAATTAAGACAGGTACCTAACAGGCCAGTGGGGGCAGCAGGAGTTACTATGAAGTTGTTGACATCAATTTTGCAGCCAGTCTGACACTGATTTAAAATGCACTCCAGGCTGATGAAAGGCAGTAGCTTCACAGTCTCTGAGACTGAAGTTCTCCGGTGCTCCACTGAACAAAGAGCGCCCAGGGAACTGCAGTGTCCCATAAACTCGCTTCAGCTGTGAGGTTGCGTTCGCCAGAAAGAAGCACG-TTGGGTAGCAACAGCTGAAAGAACTAGATTATCGGAGCGCCACACATCCCT--AGGTTCCAAAAATGTAGtcgatttttttctgttgttaaatGAGTCAAACCATTTGTACTATCTTTAATTCAGCAATAATTTCATGCTTCTTtatcatgttttcttctttctgagaaTGCCTAG----------------CTTTTTCTAATATTTGACATTTCCTGGAAGCATAAACTTGTCCTTATTCAGAACTTTTCACTATCTTGCTA---TACAAAATCTGGCAAATTTCTATGTCTCCATATGAAGTGgctaatatatttattaaatgacagTTAATTAAACTGCATGACTTATTATAAACTACCACCTAACTCTGAAATTCAGAAATATGGTCACAGTTTTTTATAA-AGGGAAATTTACCTCGCCCCACAGATATGCTGAAAAGTAGTCCATTGTGCTGTGTAACATATGCTGGGCTTTA----AAGTATAATG--------gagttggacatggtggcacacatctccATTCTCagcaactgggaggctga

a score=16195
s chr3           148534340 1152 + 160039680 TTGTATGGGAATGC-CCCCAAATGGTTCTATCTGTTTTCAGTTCCATAATCAATAAGGTATTCTGGCCATGTCTTGTATTGGGATTA-GTAATAAGAGGTTCACAAAATAAAAC-TAACACAGC-TAGCTTTGTTACGTATGCTAC-ATGGATGCTTT----------CGTAAGCACCAACCTTC--AATGGTAGCTGTTGGACTGGGCTCTGACAACTCTAC-----TCCTTCATCGC-CAGAAAGGCTCTCTTGCTGTGGGTCCTGATATTTGTCTCAGGACAGATTTTTCCACTTAAAGAGATCTCATATTAAAATGAAATTTGGGGCAGGAGAATG----GCTCACTTGAGCTGTCTTATTATCCAGCAGATTCAAACCAGATCTAAGATTGTGGACGACGATGAGAAGCAGAGAGGAAGATAAAGCAC------GTGTGCCTTT-----GGTTATAGCTGCAGCTGGTGCCT--TGCTGGTGACACTT-----------------------TATCTTATATCTACTCTCCTGGCCACTCCAAATGCTCTCCATTTCATTTCACCTAGTGAAAacacacacacacacacacacacac---acacacacacacaGGGGTGGGGGGAAAATGCCAATACTTAGCTCATCCTGCAG--TCTTATACCCTAAATAGTTATATGGTAGAAGATTAAACTCATGGATCAGCATGGTAGTTACTCCAAGGCCACCTACTCAGCTCACAATGAATTTCAGACATCT-TCTACATCACTCACAGGGCA--ACTGTCTATTTTAAAATGTGGCTTTTTAAAAGATT-TAATTTTTAAA--ATCTACATCTGTCTCAACAATCCAAC-CTTTTAAAAGTTATGTATGTTTCCCTGACT-AGTGCTGGTTAATTTTTTTAATAGAGAAGAAAAACACAAATGCCTTATTAACTTTAACA--------TTGAACACCCAGTGCTAGTTGATTCCTCTAG-TGAAAT-------AGCatatacatacatac-------atac-atacagcatatatatatac---atctcatatatatatatatatatatatatatatacatatatcatatatatGATAAG-------TATTTCCTATACTTCTTTCTCAAGGCTTATCA------TTTTTTGGAGATGCTAAAATGAAGGCATAAATGAAATAATGCATTTCCTTTATAGATAAATAAAGGTTAACTATCTGT--CAATGAAACTCTACTCAATGAGAAAGGGGAAATT
s HiC_scaffold_1 135217149 1204 + 233722169 TTTTGTGGAAAAACACTCCAAAAGGTGTTATCTGTTCCCATATACACCGTGAGTAAG-TATTCTGGCCATTTCTCATTTCTTGATTACATCATCgcaattcaacaaaacaaaaagtaagacaAAGTACCTCCGTTCC-TATGCCAAGATAGTTGTTTTAAGACTGAGCCACAAGACGCGACATCAGAAAAGATAGCTATTGGAATTTCCTATATCAAATCTACCGCAGTTCTTTATCATTCAGAAATAGCCTTGTGCCGTGGGTCATGGTATTTGCCTCACAACAGACTTTTCCAGTTACACAAACCTCACATTGAAATGAAAGTAGAGGGGGGAAAATGTATAGCTCACCAGTGTTGCTTTATTACTCAACAGATTTAAAACAGACCCAACAGCGTGGA----------------AGAGGAGGATAAGAGACTTCTAGGTGTTCGCTCCACTGGACTCTCACCAAAATCAGGGCTTAGGGCTCGGGAGACTTTGAATTCTTTGTGTTAGCcattgtatgttgtttttcttctcttccccagTCTTAATTCCCTCCTACTCTAATTACCTAACACATACACACCCATATCTGCCCacacataaaacacacacacaca----------------------actcaacCTATCTGATTGTTTCTTATGTCC-------TCACGCTGTGGAAAACAATAGTCATCTGTCAGCAGGTTAGTGAC-CAAATACTAC--ACTCAGGTTGCAGGAGCCTTCAGCAGTCTGTTTGTGccattcaaaagaaaatactaattctttt-aaatgtca-tttttaaaagattataaaaaaaaaaacatctattTTCCTCTTAACAACCCAACACTTTTTAGAATTATATATGCTTCTTTCAGTGAATGCTGATTAATTTctaaattaggaatgaaaaattcaaaagtcttgttagctttgttcttttttgtttgtttgttttgttttgttttgtttttgtatctgaaatacAAGTCAgcacct-cactcttgccagggagatgctttgccactgagctacatccctgatcCCATTCAC---TGAGTTCCTAAAGATGCAATGACAGCCAATTTCTGTAGTAAGATGAAAATAaacctgtttttcctttctccagagtagtcatttgtttttttcagagatattaaaataaatgcataaaggaA--AATGCATTTACTT--------ATGAGAGGTCAGGTGTCTCTTCTAATAAAAGTCTaccaaatgaaggagaaaagatt

a score=72200
s chr3           148537430 1435 + 160039680 AAAATTAGACTTAAGTAGAAAACTTGATAAATTTACAGAAGAGAAAGTGTTCCTTTGGTTAGCAAAGCCTAAGCCTTCACTGTCTCTTGTACACATTCAAGATAAAGAGAAGGTTGATTTGTTGCCCTCCTACATTCTTGGGTGCT--TAATTCTTGTCTTCAACCCATGGTACTGCACAGTCATTTAAGT--AGTTAAAATGTTTTAAGAATTAAAGTCTGTGGT-AGATGGGATGATATTGAACTGCCCAAAATTCCTTTCTACCTTTCAAAATTCAGCTAAGGGCATTTAATCTCCTCAATTCAGGGGGAAAGATGCAAGTACCCCCTTTGACCAAGTTGTT-----ATTAGAGCAAGAACAATAGACACCAGTCTCC--TACT-CAAGCCAGCACAGAAAGACAAAGGTCTGTCTGTTTCGGATGGCTTTTCCCTCAGGTAGATCATTGAACCGATCCTAGTTTGGCTGTTCCAAACTGAACACTGAAGTGTCATAGTGATGAACGCAGTAAGATAAATAGAGGGCTAGCTTACAAATATTTCCTTTTGCAATCTGGTATTGCATATGGATGCCTGGAATAAGTAATGTAAAT-GAGTCTCCTCTAATTTCCATTTAAACAGGGGCTTAAGCAGGATCAAGGAGCACAACTCTGCCTTGATACCCTGG-GCCTGGGCAGAGTGGCAGGGATTGTCATTGGTATTATAATTATTACTAAGTTCCTCCAAAAAGGCTCTCCTTAGAAACGGATCT--CTCTGCAGGGGATATCTGAGACTGGGGTCCTTGGGTAAAATATGAATTGAAGGCTATTGCCAAAAACCCTGAAATTACATTTCCAAAAGAGGATGTTGCATTAAAGCACCAATAAGCTGGATAATTACAG-GAATTTTCAGAATCTCCTAGCATAATTAATGACGTGGAACATCGATATTTGAAATTTGAAATCCACCCTTTCTAAATAATGTTTTTACATTTGCATACTCCATCAGAAGGAGAAGTCAATGTAGAATGGCGAAATTAGTAAGTATAAGCCAAACACGGATCGGTTATTTGTCTATTGTGAATATTACAAAGGAAAACAAGAGTTACTTCTCATTTTAAGTGGATTCTTACTAACTGCAGGGCATTTACTAAAACTAATATTAATATTATCTTAGTTAACTTTTCATATATAACAAGCGTTGAGTAAATAAACCCTGTATGAAAGCTGAAATGTAATTTATAATGAATTTGTGCTAATGCTATCTAATATGCCTAGTTTAAATGGAAGCTTTATTGAGAATAAATGTTGCTCATTTGCTTCAAAGGGAGTTACCAAACATGTGTAATTTGATGGTAATTTAAGGAGTGAC---ATAGTATTAGCCAATAGAAGTATAATTT--AAATTCCGGTATGACAGGGTGGTGCATG-GTCACAATTTTTTTTCAAGTAATATTCACTGGTTAAAA
s HiC_scaffold_1 135219328 1422 + 233722169 AAAGTTAAGATTCAGTAGAAAACGATGAACATTTAGAGaa-agaactttttcttttcctcagcaAAGCCCAAGTTTTCACTGCCTTTTGCC----------------------TtactgcttttctcttctttgtcctTGAATACTGCTAATCATTATCTTCTCCCCATGATGCCGTACCATTGTTTACCTTGAGTTAGaatgctt-aaaaattaaaatctgcagTTAGAGAAGGTGATACTGCACTCTCTAAGGTCTCTTTCCACCTTTCAAAATCCAGTTAAGGACATTTAATCTCTCTAATTCATGA--AAAGATGCAAATAACTCCTTTGACCAAACTGCTGCCTAATTAGACCAAGAGCAGTAAAAGTCATTCTCTCTTACTTCAAGCCCGCTCTGAAAAACAAAGGTCTGTCTGTTGTGGATGATTTTTCCCTTAGGTAGATAATTGAAATGATGCTGATTTGGCTGCTCCAG------CACTGAAGTGTCATAGTGATGGGTGTCATAAGATAAATATAGGGATAGcttacaaatatttctctttgcaATCTGGTATTGCATATGGATGCCTGGAATAAGTAATGTAAATTAAGTCTTCTCTAATTTACATTTAAACAGGGGCTTAAGAAGGATCAGGGAGCACCACTCTGCCTTGAAAAGCTAGAGCCTAAAAAGAGTGACAGGGATTGTCATCAGTATTATAATTATTACCAAGTTCC-AAAAAAAGACCCTTGTTAGGGATGGATCTATCTCTGCAGGGGATATCCAAGACTGCCGTGCTTGGATAAAATATGAATCAAGGACTAATGCCAAAAAgcct-aaattacatttttaaaagaggatGTTACAGTAAAATAGTGATAAGCTGGGTAATTATAGAGAATTTTATGTACGTTTTAGCATAATTAATGACATAAAGCAGCAAAGTTTGGAACTCACAATCTGTCtattttaaattatgcttttaaatttacatatatcattagaatgaaaa-taaatgtagaatGGCAAGATTAATAAGAACAAACTAAACATGGATTAGATATT-GTCCACAGTGAATCGTACAAAACAGAGCAAGAATTGTTTTTCCTATTAGGTAGATTCTCATTAACTCTAGGGTATTTACTAAAACTAATGTTAATATTATCT-AGTTGACTTTTCATatataacaaatgctggacaaATAAACCCTGTATGAAATCTGGAATGTAATTTGTAATAAATTTGTGCTAATGATATCAAATGTGCTTAGTTAAAATGGAAGCTTTATTGAGAATAAATGTTACTCATTTACTTCAAAGGGAGTCACCAAATATGTGTAATTTAATAgtaatttcagaaataataaaataatgctatGCAATATAAGTAAGATTTACAAACTTTCTCCTAACAATGaagcacatattttatatatatttttaaaaaattatttactagtaaaaa

a score=84448
s chr3           148546443 4891 + 160039680 [encoded data, 5338 characters]
s HiC_scaffold_1 135230522 4821 + 233722169 [encoded data, 5338 characters]

a score=52305
s chr3           148551884 2667 + 160039680 TTTAAAACAGTCAAAGGACAATCA-GCATCATTTGCAAATTTCTTTGCTGAAATTCATGGTTTCAAGGTTACTGACTCTGCCTGCAATTGTTTTTGAT-TAATATTTAAACAACATTACACTTATATTGTTTTGGCCAAGAAAGACTTAGAGACAGAG---AGTTAAGGAAA-AACCAAGGAACAGTACATTTAAGGTCATCAATTC-ATGAATCAATAATTAATATTTGAATACTGGTGCCTATAAATGGCTATTGTGATTTTCAGAGCCTTAGAAACGGATCTGCATGGTAGATTCAACCTAAGGACCACAGGGTACAGAGAAGCATCTCAAGTAGATT-TTAGTTCATATCTAGAAAGCTACCAGAGTGGGTGGGTAAACAACCCATCCTGGACTAGAGCAGAGAAGGTATCAATCCCTGTGGCCTTAGACCTACCACCAACAG--CAGTTTCAGTTAGTGTTCACATGTTTTGGTTCTAAT-----CTTACAACCTCTGTCTTAGTTGCAGTAAAATCTCTTCCTATTTTCTCTGatatattttttattattttaaaaCAATCCATAGCTATTTTGTAACATGTACGATTAATTATCTGTAATATAGAAACCATCATTCAATAACATTAAAATTCCTAAAATGTAAACATGATACAGCCCTTCAAGAAGAAATAATTTTGTGAAACGTACAATGTTATCATATGAAATCTGCTTATTTATGACATACACTTTGGGGT---GACACAATC---------------ATTGTTCAGTATGTAAACTCTTTTGTAAAATATGTTTCCAGATGTACTGGATAAACATATGTAGTTACACTTTAAAAAGAT-ATTAGTTACAG-----------ACACATAGTACC-----TTATAGT--TACTCCCTTCACTTAATATCTTAAGACAC---TAAGTTCATACCATTCCTAAAAATATAAA---TGAATTTTTTTCATTTTTAAAttgtatctttagattttaatttaattacaacatttcactcttcctttactccttctcaatctccccacatacctttccccacactccttccaatttactgtatctttcttcactagttgctgttgcatgcatatTGTGCTGCCTGTGTGTGTGTTTTCAGGGCTGACTGCTGGGCTCTTCCCGGGGGAAG--ACCACCTCTCCCTCTTCTGG--------CTTTACTCAGTCACCTGTCCCCAACAACCAtctataagcaccatccttag-----acccacagtgagggagtcttcacccttcatcaaggaagcttctcctttcagcaga-----------------tggagac----------------------------catca------cagaaaaccacagccaatcataatgcagagttgtggcac-------acagccTGGCTTTTGGGGGGTTAAAAGCTTCTTTTTA--GGCTCTGCAAAAGCGAGAAAATAATTCTGTTGGTCTCTGCAAATTCTGAAAGTTAGAGCCCTCTATGATTTCTGACAGAAATGTGAAGGGTGGTA---GGTTTTGAGTCAGGTGTATGAAAACTTGACGCTCCCGGGCAA---ATCTCAAATGTTAAAATGGAACTAAAGCAAGGAAGAAATAATAATCAGACATAAAATTTTAATTCGTCGTTGTCTTGGAGCCTAAGGGTACTGTGAGGTTTAACAAAAGACCACTAAGAATAACATGCAGGGAATACACTCCAAAGAAGAAGAAAATAAACAAAGAGGCTCAGCTAGTTCAAGGTAGTGCACACCACTAACAGTATGTAGGGCCAGAAATAAAAGTCTAAAGAGAAAGTGAAAAAGCTTTGAGAATTGGCCTTTAGGATAGTGAATATGAGGATGGGAAGGATTTCTGGTTAAAGCCTTTCAAGATCCAACAGATTATACTTTT-GATGGTCAATAGTATCATCGTGACCTTGACTGCTGCTGTAGGAAATAGTGGGGCATTCAAATATGGCCATGTGCCTGCTCCTTGTCAGTCAGACACCAGGAATAATGATGGCCCAAGAATAGAGGTCCTTTGGCTATATTCTTTGTTCTCTGTGGGAGGAAAACCTGAGAAAGATTTTCTATTATGCCCCAAATAGCATTCTTTCTAGCAGTCCATAATAGGGGGAAAAGGGAAGGGGATTATCAAATGAGGGGAAAGTTTACCTAGGGGAAAATAGA----GAGAGAAACTTCAGTGTATTTCATATCAATGTGGTCTGGCTTTCTGCTTCAT---TGTTAACTCCTTGAATCCTGAAAACACTCAGAAATAAGAAGCACACTTCAGTTTTTAAATATGAATGCAA--AAGAGCAATGGTGCTCAGCCATTATCCATGCCCTACGACTA---------ACAGAAAGGGTTT-CCTAGAAGTCTGG-------AAATGCAGACTCCAGTCTTTAAGCTATGATGCTT-----CCTATACATTA---TTCAAGACAATGAGGACGATCTCTCATCACTCCTACCTCTGCATCCAACAAC-CTCAGGCAGGCAATACCCAGGATCCTCTGATTTCCGGTGCACACTGGAGGCAAAGATCTGACTTTTAGTATGTTATTAAAAATCCGTGTGTGAAAGACATACACCCTCAAGAGTACCCCTAGCCCTTCCAGCAGCTGACTTATACATGGCTTGAGAGATGAAGCA------------GTGGGAAGGGTCCCAACTCTTCCTGAAGAGATGAATCAGGATCA-----CAGCCACTCAGCC--TGA-----AAACTTTCTGTGAATTTTAACCATTGCCAG------------TGCATTCCTTT-----ATGAAGATTGTTCCACCAAAGTACTTTCAAATGAGGAT
s HiC_scaffold_1 135235521 2643 + 233722169 tctaaaataatttaaacaaaattaagcATGGTTTGAAACTTTCTAAGTTAAGAATTACAATTGCTGAATTCCTGATC--ACCTACTACAATTTTTGAAATAAGATTTGGAAAAATTTCAACTTGGa--------gttaaaagaaat---gagaaaggggCCAGTTAAGGTCATGAATTAGAAAGGGGCCAGCTAAGGTCATGAATTAGATAAATGAATAATCAATATTC-AATG-TGATGCTCATAAATGGTTATTGTGAGGATTGG-TCTATAGAAACTCCTCTGAAAGATGTAT------------------------GAG------CTCTATAACATTATTACTTCAAAACCA------------AGTGAAAAAGCAGGCAGCTCCT-------TGGAAAGCACAAAGTATTCATCACCATTGCTCTGGGCTTATAACAAACAGAGCAGTTACAATTAGG------ACAGTTTTGTTCTAACTTAAACTTTCAATTTCTGTCACACTTGAaatat--tcttttcctattttcttttgtaaacgTTTT-TCAACTTGAAAGTGTCTTCAACTATTGTGCAATGCATA-AATTAATTATGTGTAATATCTAAACCATCTCTCAACAGAATCCAAACCCCAAAAATGCAAACACGCTCCAGTACTCCAAGTTAGAAAAACTTTCTGTACTGTAAAATGTTATGTTATGAAGCTGATATCTTCATAATCTACACTGTTCTGTCAAGAAATAGTCCACGTGgtcatggagatttctcaa-----agactTACTTGAA-----TGATTCC-TACGTATTGTACcaatgtattttataaagttCTTCTAGTATTCTTGATTACAGTTTCCAACCTGACAGAACGGAACAAAAATTAGAGTATTTGTCAGTGCAACTAATATGCAAAAGTATGCACATGTTCAGCTCAGTC--ACTAATTTAaactctgaattatttt----tttgaaataaataagtgGTCTAGGGTTAagctgtagaatttt-ttttctcactattCTTTGTGA--CCCATCACAT------------------TCTGAATTCAAGTGTCTCTTAACACAAGTGGTT---------------TGGTGCCCAGCTTTATA----CAG-----------------TACACAAagaaagtaattatttttttaacctttaaattgaTAACTTGATTATATCATATGCAgctaaaaatgatattttaaaagaatacctAGTGACTACTGACTAAGAAGGAAAGAT-----------AAGGAAATTAAAGTTTActacagaaaagaatgaaatcagtATAGAAACTCTGGAAGAAGCCAGTGTTGTTAAATGTCATTAAAGCACCAGGAAAtctcagtatatttttatttatcagtcTGCCCCTGATTCCACTGCCCAAGTTTTTAGGGTTAAAAATCTTTGTGTTCCTGGCTCTGTGACATTAGGAAAACCATTCTCCTGCTCTTTGTAAATTGTGAAAG--------------------------AAATCTGAAGTGTTGTGTTGGGCTTACAGTCAGGTATTTGAAAGCTTTGCTACTCCAGTGAAGTCATCTCAAATACTAAGACAGaattaaagcaggaaaaaaa--ataatgacacaTTAACATTTAATTCATTGTTGTCTTAgagcctgaggct-ctgagtgGTTTGACAAAAGACCACTAAGAATACCATGCTTGAAATATACTCCAAAGAACAAGAAAGTAAACAATGAACCTCAAATAGTTCAAGGCAACACACAC---TTACACTATGTAGGACCAAAAATAAAAGTCTAAAGAGAAACT-AAAAAGCTTTGAGA-CTGGCCTTTAGGATGGTGAATATGAGAAGGGGAAGAATTTCTAGTTAAAGCCTTTCAAGATCCAACAGATTATACTTTTTGATGGCCAACAGTATCGTCCTGACCTTGACTGCTGCTGTAGGAAATAGCGGGGCATTCAAATATGGCCAAGCATGTGCTCCACGTCAGGCAGACATTGAGGATAATGATGGGCCAAGAATAGAGTGCCTTTTACTATATGCTTTGTTCTCTGTGGGAGGAAAATCTGAGAAAGATTTTCTATTATACCCCAAATAGCATTCTTTCTGCCTGTTCATAATAGCGGGGAA--GGAAGAGGGTTATTAAACGAGGGG-GAGTTTATCTAGGG--AAATGGATTTTTGAAGAAACTTCAGTGCATTTCATATCAATAGAGTCTTGAATTCTGCTTTATCTGTTTTACCTCATGTAATCCTAGCAATGCC--GAGGTAGGAATTATGTTTCTATTT---GGTAGACATGCAACCAAGGGGATTAGTA----------AGCCCTGTGCTGCGACCACTCAATGATACAGATAAGATCTGCACTGTAATCTGTTGAGTCCAAAGCCTGACT----TCTTTAA-TTACTATACTTTTCCACCCAT-CATTACATTTTAAGACTTGTGAGATCATCTC-AGTAAGTCCTATCATTTGATCCATCATCTTTTGGGAAGGTATCATTCAGAATTCCCTGA--------GCGTGCTGTTGG-GGATAACTGACCTCTCAGATTTTATTAAGAACCCCTCTGTGAAGAACACTCTCTCCTAAGGCTGCACCCAGCCCTTCTACTAATtagaattcaaaagaa--aagagatggaacacATTTCATTCTGATGACAAAGATCCT-GCTCTTCCC------ACTAATCAGAATCAGACAGTAACAACTCATCCAATGACAGACAGGTTTCACACTGGctttaa-catagacagccatgagaGAAATGCCTCCCCCTCCTAGGTGAAGAACATCCTACTGATATAATTTCAAGTGAGAAT

a score=24179
s chr3           148555142 1167 + 160039680 TAAATAATTGTTCTGTAGCTAAAATTATT---CCTTCAGGAGAAAATCTGGAAGACCAGAATACACTCTTTGCCAAGATT----CTGAGCACACTGCGCCCATCACTTAGGCTTCCCACTGGAAGCAGTTCCC--TGTTTCCATTAGGAAACACTTCCTTCAGTTTCAACACAGAAACTTCTTGCTAAAGTTACTGAGCTGTTAGGAAAGCGTGG-AGGGTATCCCATTAAATCATTATTAAACGTTAATACCACCCTACAGTCCTACTGAGCCAATTAACAAGAACCATCTAGCAGGTCCTTGAAGAACCAGATGGTCCGGAATACTAGTA-GTAAGCTCGATATT-GCAGGATAAGAAAGGAGAAGTTG--TATTCGTAGACTCACTTTGCCTAAAACTACATGTGATTAACTCTGCCAGGTTCCTCTTGTGGTTTGTTGATGAAGGTGACCATTGAGTGCCCAGTGAATGCATATAGCGTGGTGGTCATGCAGATCTCTTTACTCTCCACCATGTGGGTCACATTAAGT-----AGCCAAGCTTTTCTATCGCGCC---CCCTCCCCTCTCTCCCCCACATTGCATAAACAGGAATCTGGTTCACACTGTGCTACATGCATGGCTCTTCAGAGCACGTT--------TTCCTATCACCTTGTTTCCTCTCTATTA----TGTTTCTAACAGTCAGGAGTGAGATGAGGTGGAAATGACAGTGAAAGATAT--TTTTTGTTTGCCAACAATAATTGTATATTTGTGGGTAAATGAGCACTTCAGTATCGAAAGCAGATCCAGGAGAGGGGCCAGGCTTCATAGCAGAGGCCGTAAAGCAACAG--CCTGGAAGCACAACCT--CTGGACCACAGGCTCGTCCCCGTAAACTCCTTCTGCTCTGCCCTGCACTTAAAGACAGGATGGAAAA-----AGCAGAAGGTGGTTATTTGAAGATGCATTATTTTTAAATGCATCTTAATAACAATTTCACGTTTG---GGAGTTGAATTCCTCACTGTAGCTTCGTCTAAATTTGTCATTCCTCTCCCCCTACATAGTTGCACTCCAATGTCATAAAGTAAAAGATCAGTCAATGGTTCTTGAGGATATTCTTCCTAGCAAAACCATTGAGACCTTGGAATTACCCAGTGTTTACCCAAGTCTAATCAAACAAAATCAAATTGCAATATAAATTCTTAAAATGCCTTT
s HiC_scaffold_1 135239464 1111 + 233722169 TAAATCATTGCTCCACTGATAAACCAGTGGAGCCCTCTATAAGAAATTTAAGTGACTGTAGTAAACTCT--GTAAAGATTTGAAcctgccccaccaccaccat-acTCA---TTCccaatatttacatttcttaacTTTTCTATCAG-AAGCATGCTTCTGAGTTAGGGCACCTACAACTCTTGCTAAAATTATTATGTTAGTAGGTGAAGATGGCAAGGTATATTATCAAATCATTATGAGACATTAATATCATTCCACAATCCAGATGGAGCAATTAGCTGGAATCATAGAGCAGTTCCCTGAAGAACCAGATTACCCAGAACAAGAGCAAGTCATTCTGATATTAGTGAGTGGAGAAGAGAAAGGTTGAGTGTTCCTAAATTGGGTACCCCTAAAAT---ATATACTCGAATTTTCAAGGCT----------------GTTGGAAATGTCCATTAAATGCAC---TCATGCACATGGCATTGTAGTCAGACAGATATTTTCACATTCCAAGGCATGTGCAGCAACTTGTCCTTGAGAGAGTCCTTACAATAACACCAGGCTTTCAGACCT------------------ACAGGGCTCTTAGTCACAGTGCCAACCATACATGGTTCTTCATGACATTCTAATCTTTGTTTCCTTCAAGATCTTCCTTCGCTGTTACTCTTCTTTCCAACACTCAGGGGTGAAATGAGGTGCAAGTGGCAGCAAAAGATATATTTTTCACTTGTAAACAATAATTGCATATTTGTGGGTAAACAGTCACTTGAATATCAAAGGCAGATCCAGGATTAGTGCCAGACATAATAAC-----TCATAATGCAACAGATCCTGGAATCGCAAGCTGCCTAG----CAGTCTCTTCTCTGAGaactcttcctcctccaccctatacttaaataaagtctaaaaaaaaaataaaagagggtacTTA-TTGGGTAAACATTAGTTTAAAATGCATTATAATACCAATTTCAAGTTGGGAAGGAGTTAAATTTCTTAAGGtagtttc----------------cattttctcatagAT--TGGTATCCCAAGGACAAGAAGCAA---------------------AGGATATTCACTTTGAGAACACTACTGGGGCCATGAAATC-TGCTGTGTTCACTCAACACtgatcaaaccaaaacaaat-------aaagttTTTACAAAGCCTTT

a score=109805
s chr3           148558125 3547 + 160039680 CTTCACAAAACTCTTGGCAACT-TGTAGAACTCCTCCGTGAAGCAAGGAAGACATTAGGAGAAA------------GTGTTCAGAAAAGTCAGTGCCTGTATACAAATAGTTCATCAATGATGGGTGGAAAAGAA--------CTTTTAAGAAAATATT----GTGAGGAAATAGTTCCTTTTCATTAAAAAAAAAGAGAGAGAGAGAATTCTTCAGAAGCAAATA---TCTGCCTCTGGCAATGAAATGCCTTTGCGGGCTGACTCAGAGTGAAGATGGGGTTACAGACAAGGAGAGAGGAG----ACAGCAGAGGAAATCCTAGGTAGCTGAGCAATTAAGGGTATTTTTACACTAAGGGAGAAAACAACAGAATACTTTATACACAAAAAGTGAAACAGGAATAAACAATAAGCATATTTGATaggagagaagaaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagGAATAAGCACATGTTTATCT-TCTTGGGCTTTCCTGGAATGATCTTAGAAGATGTTCAGTCTGTGGGAGTGTTTTTGTTCCTTCCAATCTGAAAGAACGTGAACTGTTTTCCAGGCTCCTGGTGTACATTGGAAAGGAACCATGACCTGAGGTGGTGTTGTCTTTGGAGATTAAGAAAAATGCATCTCTCTGCTATCGTTTTTCTGATCCTCTCCAATTATAACCACTTCCAGACAGTTCCCTGTGGCCTTTGCAGTGTGGTGACTACTAAATAATTGCAGTGGAGATGTCAAATATTTCCCTAATGAGCTCAAGGTCCAAAGTCAACTCTGGACAGAAAAG-ACGGGCTGGCTGGGCATTTCTGGTGAGTCTGCTTCTGGAGACGAGCACAAG-----AGGCTGCCACTAACATGTGCATG-TCACTCCTGAGCCAA----AAAGGAAGAAAACGAACATAAAGGAATAAGAGCTGTCTTTGGCTGGTAGATTAAGAGGATCACCATTGTACAGTTGTTATTTCTATTCCTTAGGTTTAGAAGTTCCGCCCCAGAGTGACTGGCTCTAGGCGGTCGGAATTCTATTCATAGATAGATGCTCAATGTTCAGATGCTCAGCACTGTGGAACGAAAGCTTCTTTGGAAAGGAAAGCA---CTATCCGCCCTCCGCAGAAATGCTGAGCATGTTAGAGAAGATCTCTCGGTTTTTGACAAAGGACTATCTGGCACCTCCAAGAGCAGGGGTAGATGCAGGTGTGAACTGACAAACA---------CATCCAC--GCTGATGCCCCAGGTTGCTACATGCTCTGTCATGCTTG---TGAGAGTGAACCAGAAAGATTCACGA-GTCCAGGCTGGACGACTCTAGCTGCTGTAGAGTTCTTTTCtaaataat--ataaaatttttttaaaaaatGAACTTAGTTAAACCTGGACTGAGACCAGTGATAATTCTGGCTACCCTAGAATTAAAAGTAACAATATGGGAATTAACATCCGTCATTATTGAA-----AAGAGATCAGAGTTACTTCCAGGTTTGGTTAAGAGTCTGTTTTTAACACTCCTTACAGTAGAGGAAAACAGCTTCCTACTGATTGAGATGCCCTTTAAATCATGGTGCTAGCAAAGCAATATGGCATTTAAAATGAGCATTTTATGTTAGGAAATTGTTCTTGTTTGTCCCTCTTCACTGAAACACCAATTGTAAGTGATCGAGTAGGGCCCCAGCTTTATGCACGGTG-------------TTTGTTCAACACCAGCTTTCCAGCCCTTCAAAACACTCCATTGGCTTAAGAACCACCTTTGCTCGGCTCTTTGTAGTATAGACACGTTTGAGCCTGTCTCTTTCAGCGC-TTGGGGATTTTCCCAATGTAAATTCTCTTGGAACCCAGCTCTCCGAC--TGTACAGATGTACTGTAACTGACTCTTTGTTTATGATCCTGTATCCAGCTTTTCTTT-------------AATCGGAGTAGACGGATTAAACACACTTCTAAGGAACCTATTGTATATTATAAAAACTACACGCTTAATTGCAaaagagaagaaaaatagaaatgaaagaaagaaaagaaagagagaaaAGAC-CAACAACCCAGCTGCTTAATTTATGGATCTCAACTCGAGTGCCAGCAATTTCAACATGGAAAACATGGTGCTCCTCATTCCCAGAGCTGGCAAGCTTTCCGGCTAAATTTTATACAGAACAAGAATCTCTTTGTTTTCCTCCAATTACTTTTTCAAACaactaaattgagtgctggtggaaggtgcttgtttttcacaagcaaagtcctcgatttcaccaaggaacaggtgcgg----aggactgg------gggccatgcacagctccc--------------atgccttgacttcaatctaaaccctccacgtctatgg-tggaaagggttgggcctcagtcaccT-------------------------TATCTGTAAA---------TGTAATGTTGGTTCTTTTTTCAGAGTCAGAGGGGCCTGGAAATAA---------CCAGATCACTTCTTTGATGCATTACCTCATGTAATTTTGACTGGCTTCTTCCTTTTCTTGGCCAATGGTCCAAAATGATAATGGAGCTTCT---TGGATAGCGACAGAGCCATGTTAGTATATGTTGCTAATGATATGGGCAAGGTTCATATCAACCATACTTTACCTGACTTTGCCTTATTGTTCTGCAAATTCTCCAG-GGGGTGTTGTTTTAGCAGAATTGGTACTTTTAACACCTGGTAGTAAATCTTCTGACACTGCAAAAAGAAAAAATCAAACTGT-CACCGCACACTGTCTTTCCAAACCATCATGGAAAGTCAC--AGGCACTTTCTCATGAGGCCCTCCTCATAGTCCAAAGATGGCTGAAACTTCTTGTGATGAAACTTCAGTGAAATGAGAAGTAGTTTTCATCTTAGACTTTAAATTCTCTTGGGTGGGATTC-AAAAGGATTT-CTTTAATTGTGAAAGTCTTTTCAAAGGTAAATAGTCTTCGAGTGTAATTTCACTTTATTGCTAAGAAACAATCTTTAGTA------ACCTGTAAGGAGGGCCAGCACTGAGAAATACCTGTTCAGCGATACATAGTACAAGTTCAAGAAGCAAATGCACACACACGTGAAATGCTGCTTTAAAAAAATCAAGAACTCAGGGCTCCAGGATCCATTAAACAGAGGCATTCCAATGTaaattattccaccagagctctgagaattcccaaatgcaatagatttttggttactaataattgagcctggatgcatgcccacaaattaaagataacttgcgcctgtatcccattactaattcttttaacaagccttcctgtGAGCATTTTTCACTTCTTAACCTTTTGGTTACTGACACTACATTCACCACAATAACCCCGCGGAACACATTTCAGGCTCATTTCTGGCTAAGCGCTTGGCATGCAGCTGTTTAGTGGGATACCCTGGTTGTGCCTGAGGTTTTCTTGTTCTTGCCAGTTTTGAGTATTCACATCTGGGTTGACAATCAGAGGTTAATATATGTCCATCTACATCAAGA-GTGTGTAAAATGACAACCTGACTGTACATTCAGAAAC---CGTGGGGACTTCCTGTTTATTCAGTTGGATACGTCA
s HiC_scaffold_1 135241318 3387 + 233722169 CTTCACAAAATCCATGACAACTGTGTGGATTTCTCCAGGAAAGTAAACAAGGCATTGGGAGAAGCTAGCCTGCCGGATGATAAAGACGGTTGAAATACAGATAGCAACAGTTCAACTGTAGAACACAGAAAGGGAAGAGTAATTTATTAAGGAAATAGTTTAAGTAAGAGAATGGTTTCTTTTCACAAAAA---------------GAAcccttcagaaaaaaataatatctgcCCTTGGCAAGGAAATGC-TTGGCTGGGTGACTTGGACGACTGGTGTGGAC-CAGAAATAGAGGGAAGAACAAAAGAGAAGACGAAAC---AGGCAGCTCTGCGATGAATGATGCTTTtg------ggaaaaggaaataagaataatttataCACAAAGct------------------------------------------------------------------------------------------------------------------------------agaggaaaaaaggaagaataa--acatgTGGAGCTCTATAAAACTTTCCTGAGATGACTTTCTAATATTTCCAATCTGCAGAAATATTTTGGTTGCTTCTAATCTGAAAGAAGTTCTATTGTTTTCCAGCCTTCCAGTGTACTTTGGAAAGGAACCATGACCTGAGGTATTGTTGTCTTTGGAGATTAAGAGAAATGCAGTCCTCTGCTATTCTTCTTCTGATCCCCTCCAATTATAACCAGTTGCAGGCAGTTCCGTGTGGCCTTTGCAGCTTGGCGACTACTAAATAATTGGAGTTGAGATGTCAAATATTTCCCTAATGAGCTCAGGGTCCAAAGTAAATCCTGCACTGAAATTCACGAAT--GCGAGGTATTTC-AATGTGTCTGCTTCTGGAGATGAGTTAGAGCTGTTATGCCTCCAAACACATGTACACGATtgcttaggggaaaaaaagaaagaaagaaaatgagcataAAGGAGAGGGGAATCTCTTTCAATAATAGATTAAGGGGATTACCACTTTCAAATAGTTATTTCTATCACTTGAGTTTAGAAATGCAGCCCCAGAATTACTGACTCTGAACATTTCTAATTCTATTCATATCTA---GCTAAATGTAGAAA--------GCTGGAGAAAGATGgattctctgaaaaagaaaacaatgccatAAGCCCTCTTCAGAAATGGCTATTATGTTGGTGGA-ACTTTGCTATTTTTGACAAAGAGGGAGTTGGTACCCCTAAATACA--GATAAACACAGGTGTT-GCTTATAAACAGCCAAGAGTCAGCCCCCAGAGAATCCTCCAGGTTGCGGTCCATTCTGTCATGCTTGAGATGAAGGTGAACCCAGGAGCATCACAACACCCAGGCTGGGGAAATGTGACTGC-----AGCACTCCTCTAAGTAAGTAACAAGATGTGACCAAA----GACCTCAGTGACTCTTGCACT-----------------------CTCAAATGTTAAAG-----------------AAGGTCTATCATTAGCCAACACGCAAGA-ATCTGA-------CCA---TTGGTGAAAAGTCTGTTTTGAGC-TTCCTTGGAGTGGGGGAAATCAACTTTCTTTTGGTTAATAGGAACTTCAAATCATGATACCATTCCAGTGA----------GTAATTAGCATATTGCACAAGAATATAACTCTGTGTTGTCCCTCTTCATTTAAACAATCATTACAAGCAACC------TGCAGATGCTCTGAACACAGTGATTTGAATTACGTTTTGTTACACGCAAGCTTTCCAATCCTTTGAAACAGTGTGCTGGCTTGGGAGCAGAATTTGCCTCACTACTTGGAGTGCGGACGCGTTTGTGCTTGTCTCTCCTATTGCTTTGGGGATTTTCCCAATGCAAGTCCTCTTGGAACTCAACTCTCCAGCTTTGCACAGATGTACTGTAACTGACTCTTTGTTTATGATCCTGtatccagcctttttttttttttttttcaaaatgggcGTAGACAGATTAGACACACTTCTAAGGGACCTATTGTGCATTGTGAACACTGCATGTTTAATTGCaaaagag---------------------gggagaagaaaaaaaaaaaaaactcaacaacCCAGCTGCTTAATTTATGGATATCAGCAACAGGGCCAGCAATTTCAACATGGAAAGTGGAACTCTCATCATTCATACAGTTGGCAAGAGTTGCTTTAGAATTTCAGACTGAACAAgaatctctttgtttttctccaaTTACTTTTTCAAACAAGTTAGTTGAGTGCTCATGGAAGGTGCTTGTTTTCC-TAAGCAAAGTCCTCTATTTCACCAGTGAACAGGTGCAGTTCAGGGAGTGGCACATAAGACATTATACATTTACCCCAAATCCATTAATACACCTTAACTTT-GTCCAAATGCTCCACTATTAGGATTGGACAAAGCTGAGCCTCTGTGACCCCCTGccccactttatttttttagagtATCTTTAAAACCAACAATTGCAAT-TTAGATTTTTTGTCAGAATCAGCTGACCCTGGAAATAAACACATTTCTCACATTTCTTCTCTAATGTATTACCTCATATAATTTTGACTCATTTCCTTCTTTAGTTGGCCCAGGGCCACTAATATCATAGGGGCTCCTCAGTGCCttccaatgaaaataaat---tatgtgCTGAGGACAGTGCAGGCACCGCCCATGGCCACAGCTCTGTTCTTGGC----CCTTCTTTCTCTACCCCTTCTCCTTCAGGCCTTTCCTTTGGTAGACTGTGTGCTTT------------------------------------------ACCCAACCATGTGCCTCACA--GTCCATGCAGAAGCTCGTGAGAAGTCACCAAGGC---TTCTTATGACGCTGTCTCCTGGGTTCTAAGAGTTTGGAACCTTCCTGTAATATGACTACAGTGGAATGAGAAGTAATTGTTATCTCGGAAATTAAATTA-ATTCAGTGGAATTCAAAAAGGATTTGCTTTAATTGTGAAACTGTTTTCAGAAACAAGTAGTCTTACAGTG-----------CATTGCGAACAGAAAATCTTTAGCGTggaacaatgaaaaaaagaataagtcaAGAGAAATACCTGTTCAGCAATAAGTAAcaagaatcagaaaagaaaacacacatgcatggaaaatgat--tttaaaaca---aaaatgtcagtgTACAAAGACCCATTAAACAGAGGCGTTCCATTCTAAATTATTCCACCAGAGCTCTTAAAATTCCCAAGTGCAATAGATTTTTGGTCACTAATAATTGAGCCTGGATTCATGCCCACAAATTAAAGATAACATGCTCCCATATCCTATTACTAATTCCTTTAACAAGGTTTCCTCTgcgtatttttcactttttaacctTTTGGTTACTGAAATTACATTCACCACAGTAGTTTCATAGAAGGGATTTCAATCTCATTTCTGTCCAAGTATTTAGGACGCAGCTGTCTAACGGGATGTCCTGATTCTACCACTTGCTTTAACATT-TTGTCAATTTTGAGTAGTTACATTTGGATGTGTTAGGAGAGGGTAACATATGTCTATATATATCAAGATGTGAATAAAATGACAACCTGATCATATAGCCAGAAACCCGCTTAGGGAATTCC-ACTCACACAGTTAGATAAGCca

a score=19253
s chr3           148563274 764 + 160039680 AATGATGATTGGCAGGAAGAAGGATAGAAAAGACGAAAGAGTGAAGGAGG-----AGAGAGAGAATGGAGGGAGGATGGCTGC---------------AGTTTATTGACATGTAGGCTTACCCACATTTTCCTTGGTGCTGCCTCGAGGAGTCTGGGTTCTGTTTTCAGGAAGCTTATCACTGTTTTCTCTACA-------TACTCAGAGAACATCGTACTCTATCAGGTCATTTGTCTTACAGTGAAGCTTTACTCCCTACTCCTCAGGGCCTCAGGAAATCTGCCTGCCATGTATCCAGAGCTTTCCAGAGGCAGGCTTGTGAGCATCACTTTCAGGGGAAGGTGAG--CCACCTTTTCCAACTGGGTGATGCTAATTTGCCTTGGCTGTGGTGCTACCTCCTCAGGCTCTCCTTTCTGAGGTCTGAAGTCCTTTCTCTTTGCAGCTCTCGGGGCTTTGTTCAAGATAGTGGGTGTTGCTCATTGACT-----CGGGGAAGAGAGGAAGACAGCA--TATTGCACACACTGAACACTGGGAAATTCTGGGTGCTGAGCTACCAGATACACAAAAGAAGACAATGGTGGCCAC--TTGATACAAGGAAGAGAGAGGGACATGACTTTGTCTGTGTCAGCCCTACACTGTCCCTCAGGTTGGCTCCATGAAGGGTCATATCTACATGCAGTAGATATGAGGAAT-TATCTGTGTCAGGTAGTACACAAAG--AAGAATGAAGTACACAATCCAACCCCAGAGTTTCCAGCAAGAGCTATGGCCATAGGTCTACTTATTGTTCTCT
s HiC_scaffold_1 135246873 751 + 233722169 AAGGGTGATTAGAAGAAAGGATTCCAAAAAacaggggagagggggagagggaaagagggagagaa-ggagagagaatgaATATTTTCTCTGAGCCGTAAGTTTATGGAC-------TTCatccatgttttcttctttgctgACTATAGGAGTCTGGGCTTTGTTTTTGGACAACTTACCACTTTTTTATCTGCTGAAATCTCACCCATCAATCATCACGTTGTATCAGATCATTTGTCTTAAAATGAAGCCCAACCTGCTGGTTCCCAGGCCCTCAGGAAAGCTGCA----GTGCACCCAGAG------ACAGGCTTGCTTGTGACTGTCCCTTTTACGGAAAGGAGAGAGCCTGCTTTTTCCACTGGGTGATGCTAGTTTGCCTTGACAGTGGTGCCACTTCCTCGGGCTCTTCTTTTTGAGGTTTTAAAACC-CTCTTATAGTAGCTTTCAGGGTTTTGTT-AAGATCAGCCATCCTGCTGGTGTCCTGAGAACTGGGGAGAAAGGA--ACAGCAATCATGGCACATACTGAAAGCTAGAAAAACCTGGATTCTGAGTCTCCA---ACCTGAAAAGCAGTGCAAGTGACTAAGGCTGGCACAGAGGAAGTTAAAGAACACAGCATAGTCCGCCCTGGCC-----ATGGGCCTCAAATCAG------------------CTATATGCAAATGATGGGTGGAGCAAATCTGTAAAATGTAATCAAGAAGGTACAGGATGAGGC------TTTAATCCCAGAGCTTCCAAAGGGAGCCAGTGCTACTGAtccatttattattcttt

a score=42469
s chr3           148565270 1122 + 160039680 AATAAACAATAAGATGGTCCCTTTTGATTGATCTAGCTACTGAAGTTACTTAGCCACCTCACTCTGACAGTCTCCCATGTAGGAAG------------CAGATTTTATATGCACATCAGAAAGACCTCAGGGAAAC--GTGATCTGCTAAAATTCACTATCTTGAATAAATCTCTAGAATCATCTACTTT--------TTGACATAGGTCGCTAAGCAAAACTAGAAGAGACCACCCATTATCAAGAGCAAAAACTTGTGTAAGTTCAAACTTAGTGGTGTGGGTAGCATCGAGAGGATTCCAGGGCCCCGGATGTCACAGGATTGTGGATTTATGCAAAGCACCAGCATTCTGAAGTTAGTGGTGCAAGGAATGAGAGGAGGAAGGCACGCTGATGGCTCCAGCTGTGTAGCAATTTGGAACAAGTACTTCTGTCTCAGATTAATAAAATGGAAATTGTGCTCCTAGAACTATGTTACTTCCTGTTAGTGCCAAATCTCTTTTGCATTTGTATGATCAAAAACTCATAATCCCATTGAATGCACACAAAATTGGATAATAAACTTTTCCAAGTGTTATTGTCAATGTCGGCTCACCAATACCAATGCAGAGGGGAAGCCGCATGCGTCGGAGCCATTATAATGTTTTAAGCTCTTGACGCTCCTCCATTTTTTCAGTGTTAAAATACATGTTCAAATTAAACATTGAACAG-------TATTAGATAAAATAGGC------ACAGATGAACAAAATCATAATTTGCTTAGCTGTTTTGTGTATAGGAAAAAAATTGAGTTGTTGTGATAGTATAATTTGTGTTTCAGGATCTGAAGGGGA----------------AAAAAATGGTTTTA---GTTCTGCCGTGAAAGTAATTTTTCTCT-------------------------AGTATGATGTTTCTGCTGTGAAGCAAAGGGCT---TTGTGCTGGTGCCACCAAGA--------TTGTGACTGGGGCTGCCTTGGGAGGAGAGGG------GCTGCTGGTGACTCTCACAGGCTGATAATCCCACACCAATTCTCATTTGTTGGTTCATCCCTGAATTACCATAAGACTGACCACCAAGAACAT-CCATAAGCTAGCAAAGAGCACCAGCAAAA----TCTCAGTGCCT-CAAATGCAGCACAGGAGAGAACTCTAAAGAGCAagggcttcctcgagagcaccaagttg
s HiC_scaffold_1 135250369 1191 + 233722169 AGTTAAAAATTGGAGAGATCTTTTTACTACACTTAGTTGCTGAAGT---------ACCtcatttcaggagtttctcaTCTAGAAGGAGGATGTCAGCACAGATGTCAAAGGCATATTAGAAAGTGTTCCAGTAAATTTGTGagctattaaaattatttacctTAAATAAATCTCTAGAGTCTTCTTCGTTGCTTCTAACTTACACAGGTCACTAAGCAAGACTACCAGGGACCACCCACAAAGAA-AGCTAAAAATTGTATTGGCCTAAACTTAGTCGTGTGGATAGCATCCAAAGGTTTCCATCCCCCTAGATTTCATAGGATTGTGAATTTATGCAAACCACCAACATTCTGAGGTTAGTGGTGCAAGGAATAAACAGA--AAGCTGAACAGATAATTCAAGCTGTGTAGCAATTTGGAAAAAGTAGTTCTATCTCagattaataaaatggaaattgcaCTTCTAGAACTATGTTACTTCCTGTTACTGCCaaatctcttttgcatttgtatGATCAAAAACTCATAATCCTATTGAATGCACACAAAATTGGATAATAAAGTTCTCCAAGTGTTATTGTTAGTATCTGCTCACCAGTACCCGCACAGAGGGAAAGCTGTATGTGTGAAAGATAGCATAATATTATAAACTTTTGAATCTCTTACATTTTTTCAGtgttgaattaaatatttaaattaagaatTGTAAAGTTGTTTCTATCAGACAAAATAAGCTTTCTATCATATGAACAAAA--ATAGGCAGGTTAGCCATCGAATGTATGAGAAACATGaaaatttgccat----ttgtactttttgcaTCAAGATCTAAATGAAAGTTTGGCCACAGAACCAATAACTGctcttaaatgtttt----------ttttttttctctctctctctctttttcttccctctgcaACATTATGCTTGAGCTGTGAAACAAAACATTATCATATACTAATGCC-CTAAGAGGAGAGGTTTGTG---TAGGTAATGTGTGAGAGAGAGGGACAAACGCCAGTGGTGATTAGCAGA-ACTGATAATACAGTATTGATTCCTATTTCCTCTCTTATACCCAAATTACCATAAGACAGAccacaaagaaaatcccagaagATGCCAGGCATTATGAACATAAACTCTTTCATTGAATCCAAATGCAGCATATTAGAAGACTCTCAAGGGCAAACGTTTCCTTGAGAACATTAAATTG

a score=117868
s chr3           148566935 4193 + 160039680 [encoded data, 4452 characters]
s HiC_scaffold_1 135251548 3891 + 233722169 [encoded data, 4452 characters]

a score=35520
s chr3           148573061 1833 + 160039680 CAGGAATAAGATGGAAGGAAAAGGGAAGAAAG--GAAAGAGAACTGTT-------------AAAGCTCAGCCAACACTATTGCAGTCAGAAGGAAACATTCTTTTACTTTGAAACAAAATGTGTGCCTTCAGTCCACAGAGAAATTAAGTGCTTGTCCATCAGGGCATAAGGCCTGATGTCTGCCCTTGATACTCTAGCAGTAAAAACTAAAAACGGTCAATCACCCTGCCTGG-ATGTGTGGTCAGGGACAGAAGCATGGACCTCTGTGAGA--------------------CATCCCACACTTAGTTGGAAGGGCTCTATCTACC-----TAAAACCATGTGGAAATTCAATTTTTAAAAATGAATAGCAATGGCTGGACATCGGTTTGAATGGTGTGAATTACCTGA-AGCATTAAGAATATTCATCGTCTGCCTTGTTAGAGCCAGCTGCTGCCCAACACTTTAAGGCAAACTG-TGAACTCAGCGACTTTTCTGAAT-TACTTTTTAGCTCTTTTGATTTTTAGCTCTTTGATTTTTCTATTTATGATTTTCCAAGACAGT-GAGGCAAGCTGATTTATTCACATTTGGGCCCTTGATATGATTTGAATAAGCTATGGAAGAGGGTCTTCAATGGCTCCTTATTCATCTGA-GGTCTGTGACCTCTGAACTGCCTCAAGGCTTTCTCTTCAACCTCTCTTTGG------------GGGTTTTCTCAACCACTTAAAGTTCTCATGATCTTCCCTTCTTCAGATGAAGATTTCAATTTTACCATTTGTAGGGTGAGTCTCTGTGCTGTCAAAAACGTGGCTGCTTCTCTGAT-AACAGGTGGTGCTGAAGGAAGAGCAAGCATGATGACAAGAAAGGAGCTTTGTCACAAGTAGCCCAGGGCTCACCTAGCACTTGTGATGTCCATGTGCAAAGTACCTGGCCCCTGGTAACATCACTATTTAAATGAGTTTGCTGTCATTCTCTCAGAGCTCCTCTGTGCTTGTCAAGCAAGGGC-CCCTTCAACTCTGTGCTGTCAGGAAAGGGTTTTCTTCTACATC-TGAGTGACCGCTCCACGGCTCCAGCTCCAAATATCACAAACTCC-TACTGACCCTC----ATGT--------------CTTCACTTTTTCCCCTTCATTTCTTCAGTAAACAGTGATTTCCTTAAGATTGCAGTAATTTCTTTAGAATGGCATTTTCAAAAAGGAGTCTCTTTTCCCTCCTGCTCTGAGAAAAGGACT----GAATTTTGGGTCTGTGTATATGTTAGGTGAAAGGTGGAAATAGTCACTAGAAGAGGGTCA-ATTG--AGCTCCAACAAA-----ACGATTGTCCAGGTGAC-----------CAATTTTAACAATTGCTCATTA-GTTGAACTACATGACCAAACAGCTATATTCCTTCTGTACTCATGGAGTCAAACTTGTTTTAGTAAAACCTGGAAAGAAATATCATGACTTAATGCTTTCTTCAGAAATAACTAGAAACTAAAATGAAATA-ATACTATCTGCAGACACAGTCCTTTTACAAGATGATTTTGC---AAGTAAGAATACTTTGTTTTATA----ATTTGCTTTGGAAAACATAATGTAGAATGGTGTAATGGAATTTTCATCAGATGTATAATCTGAAGTTTGAATAAGCTTTCTGTAAGTAATTACAAATCCTTTGCAAGCTCTATTTCAATAGATATTATTTTTCC-AACCATGAAGTTCTTTGATTTTTATTCTTAAAGGTATCAGAGAAAACTAATAGAAGGTATTAGGGAAGCTAGAGAAGGCTATTTTGTCAAAACT-CTAAATTCTCatttttattttattataaataaatCCTAATTAAAAGCACCATACATAAGTTATTTTGTAGTTGTAGTTTTTAAAAAGTCTGAAAATTTGAAAAGCACTTATTA
s HiC_scaffold_1 135258098 1756 + 233722169 CAGGAATAtggcagagggaaaagaaaaagaagttggacaaaaacagtagaaaaatatattaaaagcccATCCCCAGCTATTCtag--agaaggagaaa--------agtaaagGCAAAA----------CAGTGTTTAGAAAATTTTAT--CTCATCAGtctgtgaataa------atg--------------------aattaaaagtgACAGTTCTAAATCCCTCTGCCTGGTGTTGGTGGGAAGTTCAAAAACTACACACCTCTGTAAGAGCATGAGTGGTTTTGATGTTTAATCCA-GTTCAGTTACAAGGATTCT-TTTACTAATTTTAGAGCAAAGAAGAAGTTCTTTCTTTAA---TAAACAGCACT---TGGACATCCGTTTGAACAGTGTGAACCACCAGCCACCCTTACGAATATTCATCACCTGCCTTGTTAAACCAAGAGACCGGCCTATGCTGGGAGGCAAACTGGTGAACTGTGTGACTTCTCCAAATACTTTTTTTAGCTCTCTGA--TTTTAGCTCTTTGATTTTGCTATTTATAATCTTCCAGGAAAGAAGAATGGAGTTGATTTATTCACATT-AAGTCCTTGATACATTTTGAATAAGGAACAGAGGAGGGGTTTGAGTGACTCCTGACTCATCCAAAGGTCCGTGACCCATGAACCGCATCAAGGCTTTCTTTTCAGCCTCTCCTGAGCATACATATTCACGGCCTACTCCAGCACTTAA----------ACCTCCCATTCTTTGGAGAAAGATTTCATTTCAA------------TGAGTCTGCCTGTTGCCAAACAGCCCTATAGTTCTCTAgtgaatatatatttct----aataAGTAAGCACAGTAGTAAGAACGGAGCTTCATGATGAATATCTCAAAGCTCCTTGTGCATCTGTGATCTCAGCGTGCAAAGCACCTAGCACA-GGTGACCCTGCCCTCTGAACAAGTTTGCTCAC-TTCTTTCAGAGTCCATCTGTGCCTGGCACGTCAGAGCGCCACTCAACAATGTGCTGCAAAGGAAGTGCTT--TTTTGCATCACGAGTGGCCGTTTCATATCTCCCACTCTCACCTCCATAGGCACCTTACTGTCCACAAGCGATGTGGAAGGAAAAGCAACTGTGCTTTGCTGCATTCATTGCTTCAGAAA-------------------------GGCTACTTTACAA-------TTTAGGAAGGGAT-GCGTTTTCTACCTCCTCTG------GGTCTTTtagaattttgagttttttactATGCCACAAGCACAG-GGAAATGAGCACCTAATGGAGGTGACATTGCTGCCTCCAAGAAGGGCACACCATggt----gtcacttttttttttttttttttaacaattaccCATTACCTTGGATGATGGAACCAAAGTGCAATATTTTTTCTGCACTAGTGCACTCAAGCTTGTTTTAATAAATACTGCAGAGAAGTAGAACCATCTCATAGTTTCATTGAAagtaaacaaca--------gaaatatattctatccatgaaaatcat-tttttacaAGATGATTTTGCACTAAAGAAGAATATTTTGTCTTACAAGacatttgtttttgaaaacataattttaaattttataatggtGTTTTGATCAAAAGT----------------GTGAGTGTTAGGCCAGTAACTACAA--CCCTCATATGCACTGTTTCAAtagtaattatttttctaaaccaCAG-------TATTTTTTAGTCTTGCAGGTAACTTAGAAAGCTCCTGTGAGACA-------------AGGACTTTATATTGTCAAAACTCCTAAaagttaattttagttttatcatAGATAAATGGgcattaaa------acaaataaa--atattgtaatttttgctgtataaaaatc---aaagttaaaagGCATGTAGTA

a score=14491
s chr3           148578366 844 + 160039680 gaTTTCACAGATTCTTGTTGAGATCCAACC--CTCACATAGGACAGCACTTACTATTgtaaatatttctgtatttgaagatgagcgtgtctttatt-------gacagcctattagtgaggggcttgcgttaactaagctaatcagaagctgggcggt--ttgagatttgtggcagt----ggctagccccagctcaccacaggttccagagtcctctagtgatgTTTCGGGTGTTGAGTATGAGATTGTTGCCTGAGGTGATGGTGAACACTTGCTCTCCCCCTGGTGCAGTCTTTTCCCTGCACCACTCCTCAGAGAGGCTCTGCTTCTTACAGCAATCCCAGCTGTGCTCCACTTTCCTTGTTATTCACCAGCTGTTAGTTTAGTGGTAGG-GGAGAGAGGGGGGACACTTGCTAAGATTTTAATTAAGCCTCAAACTTAGGTTAATATAGATTCTGTGGGTCCAAAGGGGGTCTATTCATTCTTCATAA----CTTATTTCTCTCCCCGCTGTAATGTTGAGCCTGGAAGTTATCCTTACTCTTTCCTATTGTGAGT-----------ACAGTTCCCAATACTAGAGGGGATTCCATCAGTGCTGT-GCAACTGCCCTGCTAATGTTGTCAGTGTTGCTTTTCACTACCATAGCC------ATATACCGTGAAAGACCCATGCTCTTGATTCAAAACAGAACCAAGGAAGATGTCTGGGGAGAG-------AGTTCCTAGTTCCCCA--ACATCACTGAGTACCATGAGGA------------------------AACACAGTTGAGGGCTAA--AAGATGTTGCTTGCAATGATTTGAGAAGATTATCATATCTGAAGT--TCCCAAAGACTTCTATCTCGTGGCAGTCTCCGTTCTGCCTTCAGTAGCTTGTT
s HiC_scaffold_1 135262303 835 + 233722169 ggcttGACAGACTCTTGTAGAAAACCAGGCATCTTATGTTGGACAGTAGATAGTGAGCTAAATATCTCTATGTTTGGCaataagcactttttttttttctctcaaaagcCTATTAGTGAGGGGTTTATGTTAATTAATCCAGTCAGAAATTGGACCGTATTTGAGGTTTGTTGCTGTATATGGCTAGCCTCGCCTT-----------CAAATCCCT------ATCTTTAGGTTAAAAGCCTAAAGGTTCTTGCCTAAggtgattttta---------------------------tgtgtttgca-------------------TGTTTCTCATAGCTCGCTTAGCTATTTTCCACTGCTGTTTTTACTCAGCAGCTGTTAGCATGGTAGTAGAAGGGGAAAAGGGGGGCATTCACGAAGATTTTAATTAAAACTCGACCTTAGGTTAAAATAGTGTTTGTGGATGCAAAAGG----CATGTATGCTTCACgatgcttttgcttttcttccttctgtaatGCTGAGTCTGGAACTT----TCATTTGCTCCTCCTGTGGGTGATGCCTTAGAAAAATTCTCTTACCCAGACAGCAAT------GTGCTTTCTCCAGCGTCCT-CCAATAACATCTTAATCACTCTTCATGACCACACCCTGTCTAGTAGACTG---AGGAGCCTTGATGTgaatgagagacagaaaggagaaatgGCCTTTGGGGGAGTTTAAGCAGTATCTGCTCTATCATTCCCTCATTGAGCACCGTCAGAATTTATCTGAGGATTTCTCCCCATCATCCCTGTTGAAAACTAGTTATGATTTTTACAGTAAGAATGTGAGA--CTTAGGGTATCTGAAGTCACCCCAAATTTTTCACTTTCGTGCTAGT-TATGTTCCATCTTTAATGGTTTGTT

a score=123827
s chr3           148588366 2997 + 160039680 AAACCAAAACAAAATGAAAGAATGACAAGAGAAACAGCTCATCA-TCAAAAGAC---AAGCAAACACTCCAGGGTAAATTAGAGCAAATAC----TCCAAAGAGAAACAATTTCCAGTAGTAATTGAAAATGCCCTCTAGATCAGTCATG-TAACTTACAAGGGGTACATTTCCCGTTAAGTTTTGAAATGCATTTCCCTTCAAGTTTTGAAATGCAGAAAATGTCAGCTTTGTTTTTTATATATTTTT-CAGTAAAAGATTGGCAAATATTGAACCTTAGACCATCTCCACTGACAGGGCTGTGATATCCCCTTGAACTCTTTTTATGATATGAACAAAATGAATTTCTATTGTCTCTTGTTTGTTCTAACTCCTGCCCttaaaaaagaattaaaaaaaaactttttaaattagtaattttCACTACCTCATACAATCTTCTAAATTACTTTTTAGAGTGCTGGCTATTAATATTTTAGGTAGCTTTGATGTTTCACTTTATAGTCTTCAATTTTATTTTACATTTCACAGGTTCCTAGTTGCAAATAATCCTACAGGCAATTTTCTCACGCTGCAGCTATTCCTTGAAAGATATGCTAATATGGCAAGGCACTCAAGATACTGGGGGTTAAGTTAATCACCCAAAATGAGTTGTATTACTGTCAGTGGTGTATAAAGACATCCCATAGCGAGTTACAAGGAAGGCTAGCTTTAAAGCTGCTTTTCAAAAAAAAAAAATACCCAAAGCTGGAGATGAACAAAACTAAGCACCTATTTCAAAGTCTATTGAGCTCAAGAATCAAACATTTGTTATTTCTGGTCTCAGAGTTACCCAGGATAAATAAAAGGATTCATATTCTTTACAACATTTAATTACCAGGAAAACTCACACCGATCTCACACTCTGGGTCCGGATAAGACAAACACTGCATAACAGCATCTGTCTTCATAGTTCTGTGCCACAGAAGGAGGAAATCACTATTTTGTTCCCTGTTTGGTTGAACCCCATGCTGAATTT-GAAAACTTAGAGAGAAAATTGCCTTTGCTCTGCCTGTTCAAGGAAAGCAACATTTG-----------CTCTCTGAAAGTGACTTTGCAGGGATTCGGGAGG-GGTACAAGGACTGTGGATAAGATTGTCTTTCTCAACTCTGTTCCCCCATTTA-----------AGTAGCAGATTATGTGAGTAAATTTGGAACCTGCCCATT-----GTATTTTTCCCTATCTCAGAAATCCAAGTCACTTCCA--GATGATTTTAACCAACCTCAGGGACATACCCAAGTATGATTTGTGACAGTACCGACCCTTTATTTACCAGAAAGGGATTAATTAGCA-TAGCTGACCTCTACTCTAAGATACACAGCCACTTGGCAGCTCCAGATGGAGACAATCTTCTACAGCTAAGCATA----CCATGGCCATT-----CCCTAATCCTCATGGCTGGTATCATATGTGTTGCCTTAATGCTTTTTCTGAATGGGCAGCAGATTAAAGACTTTTCTGAGGCTTAATCGTCTCTGTC-AAAGGGTACTTCTCAACAGACTGGCTGCTCATAGGCAAACTGAGGTAGAGTTTGAAAATGCATTTTAAATAGCTGCACATCTGCACTTGGGATGATGGAGATTTCTA-TTTTCCATCTTGCAAAAATATTGAAATAAGATTTAGCTACAGTGCTCGGGATATGCATTTTTATGAGAGAAGAAATATATTGTGAAAAGTGTATTACTTCACTTGAGCAGATCAAGAGAGCA-AGAAAGAAGAAAGGTTTACCAGGAACATAGTATTTATTTGCCATGCATATTTGATGTGAGTTCATTAAATACGCAATAGAAGTGTCAACATAAAGTGTTGTTTAGATCAAGCTATGAAAACAAACTGCCCTGATACTAACACTGGAACATGCTAAGCTGCGGCTAAACATAAGCCTTATTTACTATATGATGAAGAAATACTTTATGGAGTATTTTTAAATAACCATATACTTAGCCTAATTGAATTTGCCCTTTATTTATAAAGGCTGATGAATCGGATACAATGACAGTGTGGCTGGCACTTTAACTTTCTGTCTGTTCACAATTTCATGGATCTTTCTTCTCTCACCTTTTAACACACAG-----GGTGACTATCAACAGTCCATGCTTAACTTGAGAGCAGTTTCTCACTCTTCCTGAGCCATTGCCCAACACAAAGCCAGATAGGAAACAGAACACATGGGTGT-TCTTTAAGGAACACACGTACTAGATGT----------GAGGGTAGCATAACATGAAGGCCCGTTCACAGGCCAGAGTG-AGGCATTCAACAGAGAAAGCACACTCATTGGAGTC-----------AAGAAATTTAAACAGGTATTTCAGATTAA---GCAAGTTCCTCCAGCAAACATGGATGGCTGTGTAGTCTTCCTGGCACAATGAC--CATAACTCTCCTTAACACAATTCAAAGGTATAAAGGAAGGGGACTATTACTGTCCTTTTGTCTCATGCAATATGCAAGAATGCTAAACCTACAGTAATTGGGACTGACCCCTCCTTTACTGGCAG--TCTATGGCAGCCTTTGAGAAACAATATTGGCAGAACAAGTGTAACATCAGAATTTTCAAGACCTAAGCATTTGCTTTCTCAATGATTTCTGCCACTGTACTGACCTTAGTCCTTCAGAGTAGAAGAAATAAAAACC---------ATATTGTCATCAGGGTATATAAAAACTCTGCCAACATAAGGAAAACATTAGGATTTATTCAACTCATTTTGAAA--------ACCATACAGTCAAAGGCCA---CTCCCATGATTCATGAAAAGTAGATTTCTCAGCTAT----TTTAATCTTAATGTTCTACTTT--TGGATATTGTTTTATGATTTCTAAAGCACCTGTTGATTGTATTGTTGACATACAGTCCAAGA--CACTGATATCA--------TTAGTTATCTAATGCTAGTATCTATTCTTCTTGTATCTTGATCTGCTCACTCAACCTTTTAAGTTGAAAAGTTCAAATGAATATATATTTTAAACGTTTCAAGATTTGAAAGAAATAGGTATAAACTCTAAAATTAGT
s HiC_scaffold_1 135267292 3011 + 233722169 aaaaaaaaaaaaaaaggaagaagaagaagaaaaagaaatagtcaaTCAAATGACCACAGACAGATACTAcagagcaaattaaaaaaaataagtgactcagtgaaacaaaattttcaatggGTGTTGAAAGCATTATTTGTATCCACTATAATATTTTACTAAGGGTACCTTCT-------------------AGTTCCCCTTCAGCTTTGAATCCAAGAAAATACTggctttgctttctttattttttttcaattcagaATGGTCAAATATTGAACTTTGGATCTTCCCAACTTATAGGACTTCAATATCCC-TTGAAGTCCTTTTATGATTTGaacaaaatgaatttatattgTCCATTGTTTGTTctaacttctgttttt---------ttaact-----ctttttaaattaataattttcacTACCTCATGCAATCTTCTAAATTACTTTTTAGAGTTCTGGCTATTAATATTTTAGGTAGCTTTGATGTTTTACTTTATagtcttcaattttattttacatttcacaGGTTCCTAGTTGCAAATAATCCTACAGGCAATTTTCTCACACTACAACTATTCCTTGGAAGATATGCTAATGCAGCCTGACACTAGCAATACTGGGGGTTAAGTTAATCACCCAAAATGAGTTGTACTACTGTCAGCGGTATATAAAGCTATCCCATAGTGAGTTACAAGGAAGGCTAGCTTTAAAGCTGCAACTC-------AAAAATACCCAAAGCtggagataaacaaaaataagcatttatttcaAAGTCTATTGAACTCAAGAAtcaaacatttgttatttttggtcTCAAAGTTATCCAGAACAAATAAAGGGATTCATATCCTTTAAGAAATTTAATTACCAAGAAAACTCTTCCAGA--TCACATACGGTACCTGGGTAAGACAAACACCACATAGCAGTAGCTATCTTCATATTTATcttcagaaaaaggaagaaatcactgTTTTGCTCTCTGTTTGGCTGAGCCCCATGGCAGTTCTAAAAAACCTGGAGAGCAAATTG-CTATCTTCTGCTCCCTTGGTAAAAGTGACTCTCGTGGCAGAAGCACAATCTAAATGTGTCTTGGCCAGAAATCAAGAGGCAACACATAGACTGTGCGCA--TTTTCCTGTCTTTCCACTGTTCTGCTTTTTGCTTGTGCTTTCAGGAATGGGTGAGGCAGGAGATGCAGGCATCTGCCAGTTACCTGGTGATTTCCACTCTTACAAA---CCACGTCACTTACAATGCTATTTTGTGTCAGCCTCTTGGACA---------ATGA--AGATGCACTCCTTACTTTGTTCTTGGGAGAATG--------TAACAGTGCCTTGTGGCTGTGCTTAGACATGAAACCACACTGTGGCCCCTTTCCTGTGTGATCTTTTCCAACTAAAGCTAAGTGCAATCACTACTGAGCGCCTTGATTTTTATTGGGTACATCCTATGCATTGCCATAATGC-TCTTCCGTATGGGCAGCAGATTAAGGACTGTCAGAAGGCTTAATCCTTTCTGTCAAAAAGATGTTTCTCAATAGACTGGCTGCTCAGCGGC-AACAGAGATAGAATTCAGAGCTGCATTTTAAATAGCAGCATGTCTGCACTCGTGATgatatagatttttctttttctgtctcgcaaaaatattgaaataagatTTAGTTACAATG-TTGTGATATGCATCTTTATGAGAGAAGAAATATGTTGTGAAAAGTGTATTACTTCACTTGAGAAGATCAAGAGAGCAGGGAAGGAATAAAGGTTTACCAGGAGCatagtatttatttgccatgcaTATTTGATATGAGTTCATTAAATACGCAATAGAAGTGTCAACATAAAGTGTTGTTTAGATCAAGCTATGAAAACAAACTGCCCTGATATTAACTTTGGAATATAGTAAGCTGTGGTTAAATATAACTCTTATTTACCATAcggtaaataaatattttattgactaTTGTTAAATAACCACCTACTTATCCTAATTGAATTTGCCCTTCATTTATGAAGACTGATGGATC---------GACAGTGTGGTTGGCACTTTTATATTCTCTCAATTTGCCATTAggtgggtttttcttttctcaccCACTGACACTCAATGATTAGCAATTATCACTAGCCCATGCCTAATTTGAGAGTATTTTCTCAGTCTCACTGGACTATTGCCAACGCTATATCCAGAGAAGAAGCGAGGCACCAAGGCGTCTTTTTCAGGAACACTTGCTGCAGACCTGGAGTGCATCGACGGCACTGCAACATGAAGA-TCACTCACTGG-CACAGTGAAGGGTTTCATAAGACAGAGTAGACTCATTCGCGTCTCTTCTGGGAAATGAAACTTAAACAGATATTTCGGATTAAAACGCAGATACCTCCGGCAAAAGTAGAAGGCTGTGTAGTCTTCCTGGCACGTTGCCTTCCTGAGGCTCATTAACAGAATGCAAAAGTAC-GTGGTAGGAGACTATTATTATCCTCACGTCTCCTGCAATATGCAGGAACGTTAAACCTGCTGTAATTAATACTGACCCTTTCTTTACCGGCAGCTCTCAGGGCAATTTTTAGGGAAGAATACCAGGAGAACAAATGC-ACAGCTGAAATTTTTAAACCCAGGC---TGCTTAC-AGATGATTTCTGCCATTGTTCTGACCTCAGTCTTTCAGAGTAGTAGAAGTAAAGGCTGTGATATAGATATTGCCATCAGAATACTTACACActcta-aaacacaaagaaaacattGCGTTCATTGGAACTCACTTCAAAAATGTTTGGACCATGCACTCAAAGGTCATTGCCCTCATTAATCAAGAAAATGAAGTTTGTTaaagatttcatttaaaatttgttttttgctCTGCTCGAT----TTTTGTAACTTCCAAAGTACCAGTCAGTGGGCCTGCTGACA---AAGTTAAGAAGCATtaattttgacttcttttttttcatttaatgatgatgtgt-ttttctttg-------------tcact-AGGCTTTTACACCAAATAATTTGAGCAGACAACTATTTTTAAGGTTTGTGTTTCCAAAAGATATAAGTATAAACTCTATATTTGAT

a score=42256
s chr3           148594537 2522 + 160039680 TTTCTATTTATATTTTCTGTATCACCTGCT-TTCTCTTCTTCCCATGGCTTTAAGTTAGTAGTTTCCTGTTTGCCTAAATGAAAGCAATGCCTTTCTGTTCCAGCTCACTC-AGCCTTTCCCACTTCCTGCTACATCCTTCCGACAAAAAAGaaaaaataataataaaaaaataaaaaaCTAATGTGATGGATCTTAAATCAAGTCTGACCATGTATGCTTCCACTTAAAATTTCCTCAGAGTTCGTTATTACCCACCGTTTCTTAGCATGGTGCACAGG-CTCATTATGTCCTTCTCTACATCTACCGTCAACTCCAGTGTTTACCCCTACTGCCTGATAT-------TGATTGTGTTTTACAATATCGTTATATAAATGGTTCAAACCACACTTCAATCTTTAAGCTTTGTGACTCATCTGTGCTATTTCTTTGATTGCTTTCTCTGCTTGATATATTTTTCCTGCTTTACGACATCAAGATTCATCCTTCAATATTCAGTACA--GAATTTTGCAATAAATCTCTAAGCAAATCTAAAAGGACATTCCCCACATATCATAACATTCTTACCAGTAACCACAATAAAATGAAATTATGATTTTTGTTTCAATT-TGTTCTTAGATGTCACTAACTCAAGGATATAATCTTTATTTTAATCAACTGTGCACACTCAACATCTTTAGTACAATATGTTTAGATATGGTTTCCTCATAACATCCAATTTATGCTTAGACCCACTGTGTATGTGGTGACGCTGTTCACTGA--CAGGAA-------------------ACACAAAGGAATCTGGAAGTACCTGGTGCCAGATCACGCATCTGAAGATGCCA--AGTTACAACTAGAAGGAAATAT-CTGTAGATAGATCTGTAGCAGGAGTTGAGTTGGGCATTTAGGCAAGTTCTGGGCTTCACATAAA--GTGAA--GTCATAATTATCTAAATGGTAAAAGGCCAATAAGGGACTTCGAATTGTTTCCTCCTTAAAGTACTAGGCTGAAAACTAATTATTTATACCTTCTACTTTAATCAAAGTTGCTTCTACAGAAAATCATTTTAATTAACTCAGATACTTAAGAATCTGGTTGCTTCCAACATGCCTTGGTCTCGATTAAGTAATAGAGTTTTGATTTCAGCTCCTAGACTGTGGGTTTATTGTGTTTATAATGAGAATTACTCACATGAAGCTCTTACACAATCATGAAAAAACACATGAACAAAAGGTCAAATTAAATACTACTGAGTTCTGAAAGACAGACTCCTGAAAGACAAGTGTTGCTCTGTG-GTAGACCTGAACAAT------------------------------------------------------GCCAGTGGTTATGACACAATA-----TGACGTGAACGTACAGGG--------------CCTGATGGGGTAACCAAAACTTCAGGATTTAAAGTAGCTGCGTGTTTCTTTCTTGGTCTGTAGACCCATAAATACAATGTGGGTTATAGATAATAGACTCTCACTACGCTTGTTCTTTAATATTCATCATGTGGTTGTAAAGGTGTACTGGGT---CGTTACCATTTGTTTGTG----GCAATtatagaagtgaagaaaacaagtaaaacctgttctcacagagcttctaagccagtgaaaaagacaaatggactgttgagatggctcagtgggtaagagcacctgactgctcttccgaaggtccggagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaagatctgactccctcttctggagtgtctgaagacagctacagtgtacttacatataataaataaatcttttttttaaaaagacaaatgatataataaataaaATTATGTATGTTCAATCACAGTGCATATTATGACTCAGACTTGCATGGAGTAAGACAAACTCCAGCAGCAAATGGAATGAAGCCCAGGGTTGAACACTGTGAATAACTGGAGGAAA--AATTCTAGGCAAAAGCCAAGAGTATGAAGTGAGGAAACCCCTACAGTGCTCAGGGAACAGCAAA--------GTGATTGAGTAAAGAAAGGGAGATGGATGTGTTCAGCCCATGAGCGCTGCCGCTTCCACTGC--CAGACTCCGAGACCATTTGGAGAGttt--gctcttagtggt---------------agccattgaaaggatttgagcagaagagccttgtcatagaactcatctttgtacttctggaatggaaaaaatggcttccacgctgagaggagagtactggtaacacacagacagaagc--acagatcagggaggagacacacatagcagtcaaggccagagcagag-gtgactt-agcctagatgggagcaaaaggcatattaagagat----------aggctgagttttagaagttaaagccacagcatttcctaatagcacaaatgctaattataagcataagtacagcttcaggaaagtctgtgacttttttaaacaattagaaagatggagttgttaataaccatgttgagcaa----ttagtaa---taggtttt------cactgagatggtaggggattccatcctagctgagcctacttgagttgcctgttaaacattccagtagaggaggtgggtgaaaaagtagatagaagtgtctgga---ctagaagaagtT
s HiC_scaffold_1 135274274 2394 + 233722169 TTGTTGCTTATATCT-----GTCACCTGCTCTTTTCTTATTATCCTTGCTT-----------------GTCTTCCTGGACTGAAACAAAAGCTTTCTAATTCATCTCCCTCCaatcttttctactttttactGTTCATTACCTACAA--------------------------------TTAAAGCAGTGAACCTAAAATCAAGTCTCACCATGTATACTTCTACTTAACATCTTTCTATGGTTGCCTATTGCCCACATCTTCTCAGCATGAAATGCAGGACTTAGCTTATCCATATCTATTCATG----TAACTTCTTACTTGACATTTACTGCCTTACATATTATGGTTATTGTGCTATACACT---GCTATACAAATGAATCATACCAGatttaagtcttcaagatttgtaattcatttgtgc-atTTGTTTGACTGATatctcaatttaaactattctttttaATTCAGAACCTGGAAATCTGGCCTTCAGTATTTAGTAGAGggaatttttc-ataaatttccaatgtaattttagagaaaagactTTATTTCCC---TCACTCTTACCGATAACCACAATGAGGTGAAACTGTAATTttattaccatttcttttttcagataaTGTACACTCTAAGACATTATCTTTACCTTAATCAATTTTG--CATTCAACATTC----TACAATGCACACAGAGATGATCT-GTGGTGACACCCAATTTCTGTCTTGGGAAACTGAATG-GAGGTGATAGCATTCATTGAagcaagaataataataaataaataaataaataaagggagcTTTAAACCCATGA-GCTAGATTGTGTTTCT---GATGCCAACAGACACAATTGGATAGAAATATACAGTAGGTAGAGGAGTAGATGTGTCTGGGTCAGGCAATCAGTAGAGATCTGGGCTAGAGATAAATCGTGAAatgttataattatataaatggtAATAGGGCAgtaaggaaattcaaattgttttctgtttaaaCTTCTATGTTGAAAGCTAATTATTTAGACCTTCTGCTTTAATCAGAATTGTTACTacagaaaatcattttaattaactCAAATATTCAAGAATTGGAATGCTTGCAACATCTCTTGGTCTAGATTAAATAACACAGTTTTGATTT---CTACTAGGCTGTTAAgttattctgtttaaaatgagAATTACCCATTTGAAACTATTAAACAAT--TGACAAAACATGCAAATTAAAGGTTGAATTAAACATCACTAAACTCTAAAAGTCAGGACACCAAAGAATTAGCACTGCTTTCTGTACAAAGATGGACAATAAGTCTCTAATTCTACTGTACTTAGGACTTCTGATGTTCCTAGGGGCTATAATAACTAAGGgttctaataaaatattaatttacttGGATATACAAAGGCACAATAAAATTACCCAGCTAggtaataaaaagaacaaagcataaATTAGATACGcattttatttctaatctctAGACCTGCCAACAAGATGCTGGGAACCCATGAAGGAATT------CATTTATACTTGAATATTCTGCAAGCATTTCTGA----GTACCTAGTACATGTTATCATTGTTTTGTGCACTGGAAATAAAGAAGTGGAAAAA-----CAACATCTG--------AAACTtctta------aaagaagtaaaacagtATATTGA-ATGGT------GATAGGTGC---------------------TTTGAAGTT---------------ATATGATG---CACAA--------AAGGAGA------------GTATGGAATA-CTGGAGGAGAAGACAGTTAATTTG--------AAATAGAT-------------------------TGACCAGCAAAGatttccatttt------------------------------------------------------aataatttgaaagaaGTCTTAGAGTGAGCATTGTAAATATCCAAAGGAAGATATTTCCAGGAAAAGGCAAAAATTATGAGATAATAAAATTCCTAGAGTGTTCAAAGAACAGCCAAAATATTTTGTGGAAGAgtaaagaaagcaaggaaaaactAGTCAG--AAAGGTAACAAGTGCTCCTATTACATCAGACTCTTAGATGTTCTTAAAAACTTTGGCTCTTACAAGTTTTTATTCTAAATGAAACCACTGAGAACATTTGAGCAGAATG---TAATGATTGAACTCGTTTTTATACCTCAACAGC-GACACTATAGCTTTGGTCCTATGAAG-------------CACATGGAATGAAGCAGAGAGACCAGCTAGTACAC-TGTGCAGCAATCCAGGTAAAAGAAGGTCGTGACTTCCACATGGATTATAGTAGAAGACCTCATAAAAAGTGATCAAATCCAGGGCATACCTTA-AAGTGAAAGGCAAAGCATTTGCTCATTGCTCAAATA--AATTAGAGACAAATGCAAAGCTTCAAGAA---TCATGATGTCTTGGAGTA--TGGAAAAATGAAACTACCATaaacaaaattgagaaaaacTATAAGAACGTCAGGTTTGAACCAATACCAAGAAGGCAGTGA--TCCATTCTGTTTGGA------------GCCTATTTAAACTTTTAGCACAGATGG-AGGTTAGACCATAGATAACTGAGCCTGAAGCTTTAGAATAAATT

a score=23591
s chr3           148597506 1492 + 160039680 AGTTTTGAAGTATAATATTACACATAATTT-ACTCTGTGTGTG--TGAATATATTT-------------TACATGGTTCTATATTAATCTAAAATAAATCACTTAATATGTTAACATgttagttagttattagttagttagttagttagttagttagctagttagttagttagttagATAATATGATTCTGTATGCACTTGTTCTCCAGACTAAACTCAATATGTCAGGTC-ACTGGCTACCTAAAGTCTT---------GGAGCAGTGAAGCTGGAATTACATAG-----TTTGAGGAACAGATCGCTCTCAGCCTAGATTTCC-AGTAGATT--AAAAGAATTCCACCCAAAAAGAACATCAGATCTGAAAATAAAAACCAATGGAAAACCAAGGACCCAGACTTTTCAT-----AAGACATTTGTTTACTCCATAGCAAACCTGTcacatacacacacacacacacacacacacacacacacacacacacacacatatatatatatatatatatat------atatacatGAATGATTGGATAAAAGACAACATAT--GATAAATTATTTCTTAGATGTGTCATTGAAATTATAATGAACAATGTAATTTAATAGAAATATAACAGCTAACAATCCAAATAAGTGAAAGACAAATGGTTCACTATGGTGGGAAAATTTTTTACTATAACCAGTACGTCCATTTTTATAAAATGGGT-TAACATCCATTTCGATAAGCTCC---ATCCTCTGGCACAATAAAG-GAATATATTCAGTTATGTTTAATAATATATCATTAGAGCATTCTATCTTTAAAAACAGTGATATTTATGTAGCCTTAAAATAGCTGCCACAGAAA--ATATGAGTTGGTTTGGCTTGGCCAAGGAAGGCATGAGAAAATATTTGCCAGAGCTCATTTCCTAGACCAACTTGTCCTTGTACCTGCCAATCATCACATTAGGCTGAAGATTAGAAACTGGGAATTTGAAGAGCAAACCAT--GTTCAGTCCCCCATAAGAACCAGCCTTTGAATACTGCTAGCTACTGCCTTTGTATCTTCTAATGTTTAAGAAGCACATTTTCAAAACTATGGATGTCTTTTCTTAATCAAAACGATCATGGATCTAATAAAATGTGTTGAATTACAATAAGTGAATTCTAATCTGTCTGACA---------------------GCAAAATGTGATTCTTCCTAGTCCTTCAGGTG----GGTCTATTT--------GGACTGACAATGACAGTCTGAGCAGCACAGAATGTTAACACATAAAGATGCTCTGAACATGGATATCTTTATTCAAAGTAGGTTGTTGAGTCCAGAAAGGACC-AAGCAAAATCTGAGTGATCACAGAAAAGGAGAACTAACAAAGCATTTGGCCA-AATTCAACACCCAAGGGGTCAC----CACTAGTGAAACCTTACATAGTCAAGTCCCCCCCAaaaacaaaacaa------------aacaaaacaaaCAAACAAACATAAAACTATGACTTTCAAACTTAGTCAATCCTAGTTAGTATGGTCAAATATTGTTCTGAATAACTTAATATATATGATATCTGA
s HiC_scaffold_1 135278772 1444 + 233722169 AGTTTTGAGATATGATATTATACATGGTTCCACTACgtgtatgcatgcatatatatatatatatatatatatatatatatatatatatatgtcacatgtggctttatattttcccttac-----agtcatt--ttaataaatttgtttataattctacca---------------aaagaattaaattcctgttgttattgttttctaCACTGA-CCCAATGTGTCAGACCCATTGGCCACTGTAAATTTCCAGGTTTAGAAATCAGAGTACATGAGATTGCATAAAGAATCTTGAAGGCCAAATCATTTGCAGACCAGATTTTTTCATAAATTGGAAAGGAACTTCACATAATAAGAATTACAGGTCTGAAAC---AAACAGTGGGAAAACCAGAGACCTCAATATTGTGTTAAGCAAGGCATTTTT--------------------------------------------------------CATCCACATAAACTTGTCTGT-TAAAAATATGTGTTCTGCCATACATTTGGAAGCTTGGCTAAGAGAGAGCATATATGTTAAAat---cattaaatgttttatttaaaatataacaaacaaT---AGTTACTGCTAATGTAACACTTAACAGTCCAAATAACTGTAAGCCACGTAGTCCAGTATGATCATAAAGATTTTAGATATAAATTGTAAGTTCATATTTATCAAATGTATACATTGTCAATTGTTGTAAACTGTTTGATCTTCAAACACAATAAAATGACTACACTTAGTTATGTTTAATGAGAAATTATTACA-CTGTCAATGTTTTAAGA-------GTTAAATTAGCATTAAAATAGCTGCCTCAGAAATTGTGTGAGTATTTTTTAATAGACCAAGAAATGCATCCAAGAATATTTGTCAAAGCTTGTTGCCTAGGTCTTCTTGTCCTTGTAAGTACTAATCAGTCCATTAGGC---AGAGTAAAGA--GGGAACTCAAATCACAAAGCATAAATTCAGTTCCCAAAGAGGATAAACACTTGAAGA---TTAAACATTGC---TATATTGCATGGAATCTGAACTGTACATTTTCTGAAATCGGTATGTCCCTTTGTAGTCAAAGACATCAGAGGTTTGATGAAATTTGTTTAATtgcatttaatgtattttaatctaTCTGGCATGGTAAACCAACTCACACCCCATAAAAT---ACTCTCTTCACATCTTCAGATAAAATGTTCTCTTCACAGCTGAAAACTGACAATTGCAGAATGAACAGCAGAAAATCCTAGCACACGAAGC--CTCTGAATAT-----CCTTTGTCCA------------GTGCGCAGGAATTACCAAAGTCAAGTCTAAATGAGGGCCAAAAAAGAAGAGCTGTGAAGTATTTGCACACAGATAAGCACTATAAAGTTCACTTCTCACTGGTGAAATGTTAGAAAGT-AATTCACCAACAGACCTAAGGCAgtgtacagtttttaaaaaatttaacaaatagaGATTAA----------------------GAACACACTTATTTTTACCAAATATGGATCTGATGAGTT--GTACATATCATGTCTAA

a score=27229
s chr3           148600847 1277 + 160039680 ACAGTTGTTCTA-AATAATAAATGATATCAGAAAAGTAAAGTC-----------ATATGCTCCTCTCAAGTGGCAGGGTCTCAGAAAC------------AAACCAACATTACATTAATATCTTTCAAATAGTGAACACTTG---CATATGACACTTCTTCTTTACAATATCTAACTTACCTCTCATGGCAATGAAATTGATATTGCAGTTATCTACCATTTTATGGATAACAAGAGGAAAGAAGAAAGGCATTCA----TTTACCTCAAGTGAACAGAGCAGCATTTCCAAAGGTGATTTCTCACAACACAAAATGAGTTTCCCTAACCAAAGTCCTGTGTT-CCCTGTGGGCCCTGTGAGTAGTCATGATGTAATCTGAATAGGTGTTGTTACAATTAATCTGGATAGTAACACATGATTCTTGAGAAACATATTTGACAATAATAATTATATAATATGGTGTAAAGAAAGAATAGGTGTAGCATTGTTAGAGATGGTGACATCT-CTTATGACTGGTGCAAACTTACCCAACGTTATGTCATATTCTCACAAGG---------------AAGGAATTAGCCCACTATAAGTACGGGTGTTATGGGAAAGAAGAGGTATTCATTTGGCAAAATGAGATTTTTAAAAATGGCTTAGGCAACTTAATTTTTCAATTCCTTGAGTTTTATAGTGAAGATTTAAGTA--AGTTGCAATATCCAGTGTTCTGAAGTTTTGAAGAACCCAAATTAC-TTTTAAATTCTTTGGCTAGACAAAAAAAGATTGAAAGATTGTCATAAATTAATTCCTTCCCtttttttccagtattggagattgaactcaaagcactgccatgctagacaagtagtccattacggaactatgtccccagccTGGATTAAAAATTTTAATGACATTGAACCAACCTTACCAGTAAATTTAATACCTCTGAAACTGAAATTTCCTACTACTGAATACCTGACCAAATTTTAAACTTT--TTTCTTTGATAGAAATGataaattttaataataaaatattttGCCTGGTGGGTGGGGGCAAGGAGGAAAAACATTTTCATG-CTACTGGC-CCAAGTGAGAAAAGCATTAGAGTTTTGAGTAGCCCTGAGATGCTGGTGCG-GGCTGGGTGCCTGATCACACA---GGACAGATATGTGGGAATGGCGCCTCTATGGTCAGGTC-CCTGGGTGCACAACTAGTTTCCTGAATTTTGTCAAAATCTCAAGCATCTGCA-TAAGACTTCAGT---AAAAGAACACTCTCAGAATAAATG-------TACGTTTAACTACGGCTGTATACATCGAAAGATCCTAGAATACT
s HiC_scaffold_1 135281098 1170 + 233722169 acagtagttctCCAATAATAAATTATACCAAGAAGGTAAAATAGTgtctaagaaataaatttctatttttgggCAGAATCTTTGATACCTTTAAAGTGATAAACCAACATC---TTAACATCTTCAATTTAGTGCATGTGTATGACACGTGACATACTTCCCTTATAATATCTCGTTTAACCCTCATGGCAATGAGATGGATTCTatcattatcttcatttttatagctgacaaaatgaaggaagagagaTATTAAATAATTTGCCTAAAATGAAGAGACCAGTATTTCTAAATG-GGTCCTTCAAACCTTAAAACCCATTTTCTTAACCATTGTACTATATGACCTTCTAGCCCCTCCAAATTGTTGTAAGGTAATTTAAAGA-------------------TGAAAGGTGA----TGACATTTCAGAGCTCT------------CAACTG---------------AGAGGGAAGGGATGCATAATCTCTAG------TATCAGCTGTTTTTGACTGGTCCAAACTTTTCAAATAGTATGTTACATACATCGAAGGCAAATTGTGTGTTGGGAGAAATTAGTTCATAAAAAGTAAGggtattaaggaaaagaaaaggtgtTCATCTgggaaaatgagtttttaaaaaatagcttagACAACTTAATTTTTCAATTCCTTGAGTTTTATAGAGAAGATTTAAATAAGAGTTATAGCATTCAATGTTCTGAGATTTCGAAgaa-caaaattactttttaaattcctttagcAGACA---------TGAAAGATTGTAG-------------------------------------------------------------------------------------------------tggattaatatttttaatgatactGAACAGATCTCACCAGGAAATTTAACAACTCCAGAAAGGAAATTTCCCAGAGCCAAATACTTTG-CAAATTTTAAACTCCCATTTCTTTAATATAGCTGATGAATTTTAGCATCAAAGTACGTTGTTTAGAG---GTAGACAAgga-gaaagatattttcaaacCTGTTGACTCCAAATTAGATAAACACTGTGATTGCAAGAAACCAATATGTGCTTGAATGTGGATTTGTGtgaaatcagagaaagaaaaagacatgtcTGAA-AGTGCCTTTAATCACAGGTCACCTGGGGACACACATAATTGTTAAGA----GTCTGAATTTCCAACATTTGTACTCAGATTTCAATACAAAAATAACACCTGGAAAACAAACGCAACTTTTAAGTTTAACT-TTGTTGAATAATTCAAAAGAGTCTGGAATATT

a score=72338
s chr3           148602734 3558 + 160039680 AAAAATGAACATTCATCTCCCAATCTACTTCTCTGAATTTCAATAATTGTAAATTGTCAGAAGCAATCAGAAGATAATGACACAAATGAGTTCCAGAAGAATCCAAACACATACG--------------------------------------------------------------------------------TAAATGAAAAGGTTCTGGCAAAGAAAAACAGCAGCCTCTTCCCAGGCGAACT-------------GTTGCAGGGATTCTCCACCTGGCA-GCGAATCTCAGCCTTCTATGTCGCCTTGCTGGAACCATTCCCCATCAGCTAGGGCTGCATTCATAGC-TGAAGACAGGCATGCTGTTGGGGCTGCTTTGTAA----TGATTTGAACCTCACTTCTATTTAAGTGTACTCTGACCCAAGACAGCAGATGTGAGAAAGTCCATCATAATTCTAGGAACTGTTCCAAATCATTGGGC-AAGAAAGCAATTGAAAACAAGCA-GGTTTATGCTGCAAATTTCCCCCAAAATTACGATAAAAAAAATAACACCTGACTATTAAGAGGTCTTTTTCAAAGTGTGGCAAATCTATTCCTTTCTTGTAACAACTAACTACCTGTCTCTACAAAATTGCAGTGCAGAAGGGAGGAGATGGTAAAAATGAGAGGCAAGCTGAGAGCTGCCTTAACTCATCAGTACTTGCTCTCTGTACGCGCATACAGAATGGGAGG-------------TGGGTGGGCGGCAGTTGAGCACCCCAGACCAAGGGAGTTGC---AGAACCAGAGCTGCCAGCAGTCCTCGGTGCCCAGGCCACTATGCTTT-TCAGCATGAAATGCTCTTCATGGCTCCCTTCCCAGAGAAAGACTGGAATGAGCGAG-GGGAAAAGACCAAAGCGTGCTGGACATTTTATCTCTGGGACCTGTACTTGCTTAGCCAAGAATTTAAAATTGGCATTAGAAAGGAAACTGGATCCAATGTGTCTTAACCTACAGGGGGAAAAAATACCC---CTCTGCAACTTCCTGCACAGTAGAAAACATCTATGGCATCTTTTTATGAAGACATCAGTCTATCCACAGCAGAAGAGCTGCAGGTGACTGATAATAATTAAGACATCCTTTCAATTACGGCCTCTGACAATATTACTGATAGACATTTCGTGGACAACATTTATCTAACAAAAGATATGTTGAGAGAGttttatgctatgagtggtttcccacttgaattctttcatctgaaccagtcacacgtgagaaaagtgaccgtagttgccagaagaggccagaaaatgggcataaatcccctagaactggaatcacaaatgttgggagcagcctggtgctgacactgggaactgatcttgggtcctctgcaagaacagttcatgctctgaactgctatgtcatttctttaaccTTAAGAAGAAGGATCTAATTTTCCTTATGTTGGTTTGAGGTAGAGTATGATGTAGCTATGGACCTTCTCGCTGTGTTTTCAAATGTCACTCGTACAGTTCTGGTCACAGTCACTCATTCAGTAGtctgtttcttttaagatgggttctcgtgtcaatcaagctgctctcaaacttgctatataaccaaagaaggcctgaactcccttgtgctgggattataggcatgcacACAGTACCAGGATAGAGAAGTACATTTTCATAGAGAAATACCATGCTTGTCTGCAGATATTGACA--------TTCAGGACAAGACAGCAGTGACCTAAGTAAAATCATCACTCTATACCGGTGCATAGATGTAGCACACTGACGTCAGCAGAGCCAGGGATTAAAGGAGTCTGAATTATGAATCCACATATTGTATGAGGGAATATCAACTTGGTA-TTTTTGAAAATTTAGTTTCTTGTGTGCATCTGCATCTCAGGAGAAAGCTCACACATCACAGTGTATTTCCTACGTTAATCCAATTATAATGATTTCTATAGTTAACGATGAGCCACAAAGGTTTTTAATCACACTGGGTTCCCCTTGGTATGGCGTACACAGTACCATTGCTTGCCTGCAAAAGAGCAGCACAGAGATGTCCCTGTACTCTAATGGGATGATGGACAAGCCGA-GAGTTCATCCTCAAAGCTCAAGACACTGTCTGAAAGAGACAGAGCCACAGCTTTGGAACCAAGCAAAACTCTGATTCACCCGTGTTGTCGTTGGCTTTCACTGTGCAGTCAAACTGGATAATTCCAAT-AAAAGTATTCACCTTGGGGCTTAAAATTATACCCTTAAAACTAACAGGGTAATTACCTGTTCTGCATTTTTTTTCTCTCCCTCTGAACACACAGCTTTCTCCTTATGGCTTCAGGGAAGAAACACTGGGAACTTAATAGACGAAGAGAAAAGAAGGT--CAAGGTTGGAATCTCCCTTTGTTCAGTTAGTCTGGTCTCAAAGC-----TTTAGAG------ATCTTGGGATTGAAAAGCTATACCCAATAGCAGAGTCTTTTTCT---------AAAGAGGCAT---GGCGTTACCTTCCATTGTCATTTAT----ACTTGGGCATGGGTTCAATTTGAAACAGATTTTCATCCAGAAGAAGGTGGAAATACATAG-TGCTAGGTCGGGGTG-------AGACAATTAGCAAGGGAATTATACTAATGACAGAGGTGAGTTGGGGTGAG---CTGGGCATGAACAGAGGACCGTTTGCCTCATAAACTCCCGACTGTT---GGAGGAGAATCATTGGCTGTGTG-TATATctgtcatatcgctgtacagcgaagtga--gcttaatacacagaaatgtactgtcttccatcagtggagtctagcctcccattttcagagagttgcctcctgttgacagctgggagaggaactgcacttcatgcctctctctccagcttctgatagctgggagtctcaagttttccttggcttgtgagtgctgctt------------------------gctcagtctg-acacatttcccaatatctccctttcttacaaagatgccagacacaataaattaaggtatactttaatgatctcaacttgaccatttacaaggacaacttttaaaaatctggtcataagtagagatacttctagttggtattttaacatCTTGTAGAAGAGTCTCTCAGTTAAACATATAAAAG-----CAACTATTTTTAAAAATAACTAATA-CTTTTTAAGAAGAAACATTTTTATTAATAACAAAAACTCT---TCTACTATGCAACTCTCAGTTGTCCTTGACTGAGCACCATGTGATTAAATTAGTAATTTCCAACATGTTAAGCATTGAGGCACTGAGGTTAGTAGGTTAGAAACGAGGAGAGACAAAAGAACCACTAACTATCTACAAACTGTGAGCAACAAAATCAGAATCAATAGAGG---CCATG----TTTTTTAAGTTGTGCTGAATG------ttttttaattaaaatatgaaaaattaat-taCTTGCCATATTAAATATAAAAAGTAAAAGCTTCTAAACTTTTGTTGGCTCATAGAAATGAT--GAATATACCTCTGGAACTGTCTTCTCTTTCCTACTCTTCTTCCTGTATGGGTT----AAAGGACTCTGTCA----GATCAAGGCCATGTCTGTCCC----------------------------------CATGATGCCAGTCTACCAATACTACATACTCTCTGTTGA-----GCACCCCTGCTTAGGGACAGTGGAAAGAGA---GATGCAGCCCAGTGACATCAGTCTGATCTCCTTAGAATAGCTGAGTCTGTTTCC
s HiC_scaffold_1 135282477 3378 + 233722169 AATAGTGAACACTTTTCTACCAACATTTTTACTGGAGTTTCAATATTTGAAAATGCTCAGTAACAATTGGAAGATAATGACACAAAAGTGTTCCAGAA------ACacacattctctgtctctgtctctctgtctctctgtctctgtctctctcttctctctctctctctctctctctctctctctctctctctctcactggacAGGATCTGGTAGGGAAAAATGACAGACTTTTCCT--GTCATTTTCCCTCCTTCCTCGCTGTAGGGATGGCCTCTCTGGGGTGCCCTTCTCCACTCTCTACCCCGTCACACTGGAATCATTTCTAGCAAGCTGGAG--AGACTCCTAGTGTCACTGCTGCCACCTTGTCACTGCTGCTTTGGAAGAACTGTTCTGACTCCTGCTTTTGTC-AAATAGACTTTGACCTAACAAAGAAGACACAAGAGAGTTTATTATAATTCCACATACTGTCTTCAATTGCTGGGAGaagaatgaagttgaaaatgACCATGGTTTATTCTGCATATATTTtcccaattt-caattaaaaa--caaCTGCTGAATAGTGAAAAGCCTCTCCCAACTTGTAGCGAATCTATTACTTTCTCGTAACAACCCACTACCTGTCTCTACAAAATTGCAGCTTGTAAGGGAGGAGATGGAGAAAACAAGGGGCAGGCTCGGAGCTGCCTTAATTTATCACAACTGGTTCT--GCACAGACACGCATAAGGGGAGGATGGGCCGGAGGCTGAGCAAGAAGCAGCCGAATGTTTCAGAC--------TTGCTTAGGAGCCGAAGCCTCCCCCAGTCCTCCCAGTCCGTGCCACTGAGCGGGGTGAGCACAAAGtggtcttcatttttcttttcccaaagcAGAACTGAAATGAGAAAGCAGGAAGAAA---------GCTGCACATTTTATCTATAGGAGTTTTGC------ATCCAGGCACTTAAGAGTGATGCTA-ACAGGAAATCCAATCCCATGTATCTTAAcctactatcaaaaaaaaaattctatctctgcagcttcctgcACACCAGACAACATCTGTATCATCCTTTTATGAAGGCATCACTCTATCAGCTGCAGGATCGCTGGAGGTGACTGATAATAATTAATACATCTTTTCAATTACAGCTTCTGACAATATTACTGATAGAC------------------------------------------------ATGCCACGAGTAATGTT-------------------------------ACATAACAAAAGCTAT----GTTGCAAG-------------------------------------------------------------------------------------------------------TATTTTGTTCTATGA----CTATTCCATCACTT--------------------------------------------------------------------------------------------------ACAGTTCCTGTACCAGTCACTC---------------TCCTTT-------------------------CTCCTACCAAGATTG--ATGTAAC-------AGCTTCCAGTGGCATTTTCTAAGGCCCTGGT----------GTACC----TGCAGGAGTCAATTTTCATGGAGCATTGAAAGGTTTGTCTGCAGAAATTCATAGTCAGAGTTTCAAGAGAAGATGGCTTTGATTCAAGTAAAATTACCACTC-AGAATGGCAACAAGATAT--TATACTTTCTTTAGTGTGGCTTGGGATTAAGAGAGTCTGAATTATGAATCCACATTTTTTATGAGAGAAAGTCAACTTCATCCTTTTTGAAAATTTAGCTCTTAATGTACATTTGGCTCTCAAGGGGAAACTCAGACATCACAGTGTATTTCCTAAATTAATCCAATTATAATGATTTCTATATTTAACGATGAGCCACAAATGTTTTTAATCACACCCTGTTCCCTATGGTACAGCTTACACAATACCACTGCTTGCCTGCTAAACTATAGCACAAAAATACTCCTGCACATTAATGGAATACCTGGCAATGAGAGGAATTCATTTTCAAAGCTCAAACCACTTTCTGAAAGGTCAGGAGCCACAGatttggaacaaaacaaaaatatgtttcaCTCATGTTTTCTTTGGCTTCTTCTACTTAGCCAAACGGGATAATTCCAATAAAAAGTATTCACCTAGGGGCCTAAAATTATACTCTTAAAATTAACAGGATAATTACCcactctgta---tttctcttttgctctgaAGACACAAGCTTTGTTTTATGGCTTCAGGGAAGAAATA----GAATTTAATAGAGAAGGGGAGAAAATTGTTGCAGGCTTGAGATCTTGCCTTCATTA----------CCTCAAGGCATGTTTCCAGAGGCCCGAGTCCCAGGGTTGAAAATCCAGATACGGGACCAGGGGTCTTTCCTTGAAAAATGAAGAAGGCATTTAACAATCCTCTTCCTCTGTGATTTATATACACTTGTATATGAGTGTCACTGGAGATGACTTTTTACCCTGAAATAGGTGGAAATATGTAGAAGTTTTTTCAGTGTgttcaataaaatgtttggcaaGGACCGTCTAGGAATGAT-GGGGTGAGTTAGGGTGAAGCCTTAGTCATACCTTCTAGAAGCCATGTCTCAtgagctttttaattttctccaatgaAAACCATCGACAGTGGGATGGGACTGGCATAACAACATGCCACAAAGTGATTTCCTAAGAAACAGGAATGCATTGTCTCACAGTCATGCAGTGTAGAACCC------caaagcattgttttcttctggcaGAGGTGAGAGATAATCTGCTACACGCTCTTCTC-CAACCTTCTGA-----AGGAGTCT--AGCATTCCTCACTTTGTGGTCTCTATCTCCCTGCATCTTTATATTCTCTTCCTCTCAACCTATTTATGTGTCcaaatttct-cctcctttatacGCGTAGCAATCATATTAAATTAGCACCCAACCTAACGATCCCATCTTGACCATCTACAAAGGCA---TTTTCAAATAAGGGCATATTTAGAAATACATCAGGTCAAGACACTGACATTTGCTACTGGAACATT---ATTCAACCTATAAGAGAGATTAAAGTAATTTCAAAACTATCAGCCATCCATTCAAGTAGA---ATTATAATTTCCTAGAAAATGTCTATGTCTACTATGCGA-GGTTGCCTGTCCTTGACTTACAAGCACATGGATAGATCAGT-GTTCTTAACCAGCTGAGGTTTGGGATAGTG-GGTAAATAAGTCAGGAAGGGTTGGCAGTGGAGAAAGGATTAAC-ATCTTCTAG-GGCAAACACCAAAATCAGAATTAATAAAAGTGcctgtggttttgttttaa--tgtgtTAAACTTTAGACTTTTGTGATTGTGGTATAAAAAACAAATCTATTTATGATACTAA--AAGATAAGTGAAAG-----------GTATCGGCTGATAAGAATGAGTAAAAGATACTTTTGAAGCAACTCTTTTTTCGATATCTTTTTTCTAATATGGATTGgtgaagaaaataagtaaaaatgaacaAGGTCTTATCTCTCCAGGAGAAGGGAATTTTAGCACTAAAAGCCTATTAGTATGATA-AAATTTACTATTACTAC--ACTCACCATTGATCCACACACTATTGAACAGGAAAGAAGGAATTAAATAGGATGGAAGCCGGTCAGCTCAGTCTGACCCATCCTGGGTACCTCTATCTGTTCCC

a score=19082
s chr3           148607126 644 + 160039680 GGATCTTGTGA----GATCCAAAGGAATTTGGAATGGCCTTTTTCCTGTTGAAATTGCCTGGATTTCACACTTCTCACCTTGTGCTGAAAGCA---AACTTTGAGGTTTACAGCACCCCAGTGACCCATGGAGTCAGGGAAGGAACCACTCTCCATTTCTCTAAGACAATAAATATTGGTGTTCAACACTGGAAATGGGTCCCTAAAAACAATAGATATCAGAGATTGATACACATGTAGGCTCACCATCC--AAAGTGACATC-CCTCTACATAAATACATACAA-GGTGACTTCCTGT--------TCCTTCAAGTATGATCCTAGATTGTAGGATGCAGGACATTCTTAGATTCCACAACTAAAACAGAAACAGGTATAGAGATCCGACTCTATAGGAAAGCAGGAACCACATCACCGCTATGCTCAGTGCAATCCTTGCTACTGATATTTTATCAGTTTGGCCCAACTTCAAATCCAAACTTGGAGTAGTCCTTTTAAGAATTATCCCCACAAACCACTTTACAATCATTTCGCAGGTAAATAGAGTCAACCTATCTTGTATGGGCATCTCTGTACAAGTGAGAATGGCCCTACTGCTCAAAACGCCTATGGAAAAAAATTGGAATTATATCTTACATTTATAACAGAAGTGGACTGTG
s HiC_scaffold_1 135285899 651 + 233722169 GGATCTTGTAAATAAGGACCAATAGAATTTAGAACAAGTTTTTCCCTTCTGACATTGTTTGAGTTCCACTATTATTACCTTGTACTAAAAACAGCCAGCTTTGAGATTCAAAGCGCATCAGTGACCTATGGGTTCTGGGAAGGAACCACTCTCTCTTTCCCTAAGGCAATAAGCTTCACTGCTCAGCCCTGGAAATGGAATTCTAAAAGGAAACATGATTTGAGGCTGACAAGTACATTGGTTTAATATCACGAAAGTAGTATCACCATTACACTGATGTGTGTGATGACGCTTTCCTGCTTCATTGATCCTTTAAGTGTGATCCCAGATTGCTGTGTGCAA-----TCTTAAATTCTGACATCCATAGAGAAACAGGTACATAAATCTGGCTCAACTGCAAAACAGAAACTACAGCCCTCTCCTACTCAGTACAGTCCTCACTCTAGGTATTAGCTCAGTTTGGCCCAGCCTCAAACTCAAATCCAGAGACACTCTTTCAAATGTGGTTCCTA-AAACCCCTGTATATTTCCTGT-CAGGCAAACACAGTCCGCAACTGCTTCACATGTACCTCAGCACTAATG-GTATGGACTT-TTGCTCTGAACTTGCA---AAGGAAATTAGAATCCTGTCACATATTTATAACACAAAAGGGATTTG

a score=31459
s chr3           148610400 1066 + 160039680 agaaaacagattattgtac---atatgaatctcaaaccacatgctgtcactggcagtagtaatgagatttcaacctaaagacctcatttatgtctctgtttgttggggttgttaaga-gcagatgaaatcctggtttgcacagacaacagtttcatttttaacctttttgttttcaatcctacacatcttcaatta----catcctgacatt------aggagtacaatatgtttattgtttgccagttgcatggttagca-atatttCAGAGTCACACATTGGTAACATTTTCACCATG---AGTCTTTCTTGAGTGTGTGAACATGTAGGATTGTGTCAGGCACATGTTAATGGAACA--CGAGACATTAAATATTATCATGGAAGCATCCCGCACATCTCAACGCCTATATCCATATCATAGTCACTCAGC--TTCATCAGAATCAAATTTACTTTACTTTCCATTTTGAATTCAAACCTTAAGTTT-GGTTTTCTTGCTAACGCTTTATATGCAGTTGTAAATGAGATTAACATCACAGGCCAGCATTGCATATTGAGTTCTTTCAGCTTATT-AAAAATGTCAGCAAGAGACGAAAGCAAGCACAACCACGCTTTCAGTGAGA-TTTCGTTAATGGTGCTATTACCATGAGGGAACTTTTTTTCCTCATCTCGTTTGAAAGATTTGTAGCAAGACTTGGTCTT-GGCAGGACCAACTAACCTCAACTAAAAAGGGAATTCTGAAACCCCAATATGAAACCACAAACCCTACTAAAAATTCTTCATTGTAAAGAATACACCTTAAAAATTGGCAATACTCATCATAGACGCTGAACACTGTTTTGAAAGATGCTCATTAATCTGCTTTACAGTCAATGGTTGTCTACACAACACACCACAATTGTCTGAACTTATTTTGG---CTGCTTTTCCATGAATCAAAATGCCTGCGTGTTTTTATAGCCATTACTTCCTCG-----ATGCTAATTTCAACTCTGCACATCTTTGGAAGCTCGTTTGCTGGCTTGTTCTGAGAAATTAACACAAAGCTTAAACACTTGTTTGTACATTCCACGTATTTAAATGTTTTTTCC
s HiC_scaffold_1 135288097 1046 + 233722169 AGAAGTAAGATTATTAGACCAAATGTAAAACTTGGAAT-CATATTATGACTGACAGTTGGAATCAGatttcagta-aaatatattatttatttctgtgtttgttttagttgtttagaagaaagaaaaattccaaattaCAGAGATGAC----TAATTTTTAACTCTCTGCTTAGCATT--TTCATGTCTTCAGTTAACCACatccaaaaatttgaaaaaggagtaataaaagttt-tcatttccaatttcaataACCAGCCCATGCCTCAGAATTACATTTCACAAAGTTTCTCAACAAATATAGTCCCTTCTCAGTGTATAAATATATCTGCATATATGAGATCCATATACCTTGAAAGATTGAGATATTCAGTAA-ACAATGAAGGAATCTCATATatcaaaatgttgattttt-tatcACAATCATTCAGAGATGCATAAGTGTCTAATTTACTTTA-TTTGCATATTGAATCCAacctttaaatttcaatttttttactaatattttttaCACAGTTCTGAATGAGATTAATATGGCAGGGTAGCATTG-GCATAGAGTTCTTTTAGTTTATTTAGAAATGTCAATAAGAGACAAAAGCAAGAACTATCatgttttgaataaaaattttgttGAT-----TATTA-----------------------------TTTGAAAGATTTGTAGTAAATCTTGGCCTTTGGTTGCAGCAACTAACCTCAACTGAAAAGTAAACTTTGGAACTCATCTGTGCAACCACAAACAATGCTAAAAATTCTGCATTATAAAGAGTACATTTTAAAAACGGGAAAAATCTATCACAAAACC--AACGTTGTTTTGCAAGCTATTCATCAATCTGCTTAATAGTGAGTGGTTGTCTATACAACATACCACAATTATCTGAGTGCATTTTGGAAACTGCTCATATATAAATCAAAATTCTTGTA-GCTTTTCCAGCCATTACTTGCTGAAATATATGCTAATTTCATCCCCATATATTTTTGACCACTCATTTgatggcatattttta-aaattaacataagaCTTAACCACTTTTCT---TGTGGTATGCAATTAAAAGATTTTACC

a score=99869
s chr3           148612141 4042 + 160039680 [encoded data, 4346 characters]
s HiC_scaffold_1 135289185 4146 + 233722169 [encoded data, 4346 characters]

a score=11168
s chr3           148622343 297 + 160039680 CTCTGCAAGAGCA-CAGTCTGAACTCAGGGAAT-GAGCTGCTGCTGAATTAAAATGA-CCATTGAATCACCAC--TGAAGCCTTCG--GCGCCTGCCCA---GCCTATCCTACGCCTCCATGTTCCTCTGTTTAAATTGCAAAGCACACTGCT--TGTTATTAGTTGCTATCATGTGTTTTGGATCTGACTGTATTGAGTTTAATAAGCCTGTTTGAAGAGACAGATTCTAAGTCGTTGACATTTTCTAGTAGTCCCCTCATGCATTCAAATGAACAGAAGTCATCTTTAAAACAAAATTTCTACTttt
s HiC_scaffold_1 135303283 309 + 233722169 CTCTTCAAGAGTAGTTCTCTgaacacaaaaaatagaaataatgctAAGTTAAAATAAACTATCAAAAAATCACATTGACACTTTCACAAAGTCTGCTCATTAATTTTTTCAAACTCcccttattcttatttttaacttcCAAAGCATGCAGACAACATCATTAGCTTACATCACCTGTTTTGAACCTGAATGTATCCAGTTTAATAAGCCTGTGTAAAGAGACAAATTACAAGTCATTGACATTTTCTAATATTCCTCTTCTGCATTCAAATGAATAGAAATCATCTTCAAAACAAAATCCACATTATT

a score=23916
s chr3           148623141 919 + 160039680 CTTCCTCCCTGAATAATACCTTAGTACAGAAA-GCACCTTAATTGCTCCCCACGCTGTTCAAGCAAAAATGAGCACTCATCCTCATGGAGCAAGGTACTTTGTTGCATTTTGAAGTACTTGACAATTAATGATGCCAAATTTAACAGCCAGCGCCAAACTTCCTGGGCTTTTCCTCTCTTCTCCTGTAGCAACACAGTTTCGAAACTTCGGCATCA-ATAGGGGCTGGG--CTCTCGGTATGTTGTTGGTTGTTATTATCTCATCTTTATTTCCCTGCAGTTTTTTTTTTTTTTTTTAGGAGTGGGATCAGAGTTTCCCTCAAGTATCAATCTTTCTTTCCAACTTTATAAAGTCTTTAAAACGCTCGGAAAAGGCATGCCAATTATTGGCTTTAATTGTGATCTTTCTGTTTGTTCTA------GCTG------TTTTCTAGGAGAAGGCAGactctgagctttacag------gacaatcatccctgtcacagctcctcatgtgtgtgtctccagtgttaagaatggctacagataacacctgaatgaagggtg-tggctgagtttcaagaaaatttcatttacaaa---aagtagaggaccaaagttgatcccaggactatactttattgacctctgGATTCTAACAATGCT--CAGTTTTACA-----AGTCATGGCCCATTACCACTTAAATGTTACTTTAATCCAACATAGATAATCATATTGAACTATACCAGGAGT-CTTACGT-TGAGGGAGGGGCAGGTCAAACCCAAGCAAGTTGAGTGGGCAAGGACTGATGAAATAGAGGGTAACTTGTATAGAAGTTGCAGAGCAAAGGAACAG---CAAGATGCTGACTACAAGAACCACATCATGGTTTTTGCATCTT-GTGTGTCTGCTACTTAAGGCCAGGGCTCGTGTGCTAA---TTAAAAGTAAGGTCCAAATATTTTTC
s HiC_scaffold_1 135304560 919 + 233722169 CTTCTTTCCTGAAGAACAAGTTTGTACAGAAAAGTACCTTAATTACTCACCAGGCAGTTCAGGTAAAGACAGGCCTATATCATTATGAAAGAAATCACTTTGCTGCATTTTGAGCTACTTGAAAATCAGTGATGCCAAATTTAACAGTGAGCTCCAAACTTTCTGGGCTTTTGGTTTCTTTGCCTCTAGCGACACACTTT-GAATCTGTTGTAGCATCTGGGAGATGGAGTCTCTTTGTTTGCCGTTGGGTGTTGTTGTTTTATCTGTATTTCCCTGCAG----------CATTAATAAAAACAGGACCAGAGTGTCTCTCCAGTATCAATCTCTATTTCTAATGTTCTGTAATCTCCAAACAGTTCAAAAAGGGAGTGCCACCTGTTTCCTT--AATGACATCATTTCACAGATTTTAGCATAGGCTGGCAAACTTTTCTATAAAAGGTCCGACTGTAAACATTTTAGACTTTAAAAACTAGTCTTTACCACAGCT-CTAAGGTCTGCCTTTGTGGTG-TAAAAGCAGCCATAAACAATACATGAGTTATGTGTGTTGagtgtgttccaataaaactttatttacaaaccTCAGCAGTGAGCAAGTTTTGGTCTCTAAGCTATAGTCTGCTGACCCTTGATTTATAACAATGCTCACAATTTTACAGACCTATTCTTGTATCTTTGCCATCTGCCTGGCATTTTATCCCAACATACATAAT----TTTAACTATCTTAGCAATCCTTACATGTAGGGGAAGAACAG-------CACAGGAAGGTTAATGGGCAAATATTGAATAAGTAGTAAGTAA----TAGGGGcattataaaacaaagaaacagactcAAATTGTTGCTT--AAATACTAc----------ttgctccttcctctgccctgtAAACAAGACCAGGGCTCTTGTGGTAACTGTTATGGTTAATGTTCAGATGCCtccc

a score=22284
s chr3           148624031 667 + 160039680 TAATTAAAAGTAAGGTCCAAATATTTTTCATTTAATTGagttgaagctggagataattagttccaataacagtaactttgaaagaatgaaagctgcagtgactcaaatactttgaaaacacagaactcctagctggc------cttcgacatcttgttccaggaataaagaggaaggctgg-gaaGGCAGGGCAGTCTGACTCCTCAAGACAGAGGCA-TGTAATTAACAGCGAGATTGGGTTCTGAGCCCTTTTTCGTCAATTTTATGCTTAATCTGTGTCTTGTCATTATGAAATTAAAATCCAACTGGTATGTTTACACGGTGACTCGCTCATG--ACTCTGATTTCGGAAGTTACAGAGTTGTACATCATTAACCCCAAGAGTCTGGCATTTGCTTGAATTATTTGTTGCTGTAAATTATATTTGTTCATTATATATCTGAGAAGTTATATTA-----AATTTACTTGTCAACTCCACTGACTCATCCAATGCCTCTTTAAATGAACAAACATGGAATTGAGGTAGGAAAGTCTTTTTACCCTGCATAATTTTGCAAATAAAAATGGTAATTGAAAGAGCGTCTTTTAAGGATAACATA-CATCCTACCAGGTTTCTTGTGCTCCGTGGGC------------------------TTCTCTTATTTTAGTTCTTGCCACAACTCTCTATTGAGAAAATCTAAA
s HiC_scaffold_1 135305804 684 + 233722169 taattaaaaata---------------ttatttcatttagttgaaattagaaataattagtTACTATATTAGTAATTTTGAGAGAATTAATGatgaatggaacaaaacactTTGAAAATGCTCAAAATCAAGATGGCTGGACACATACTCATCTTGTTATCAGAACACAAAGAAAGGCTGGAGGACACTTGCCAGTCTGATACTTCAAGACAGTTACAACATAATTAATAGCTAGACTGGGTTCCAAGTCATTTTTCATCAATTGTATACTTAATCTGTGTCTTGTCATTATGAAATTAAATTCCGACTGGTATGTTTGTATCACAGTTTTCTGGTGGCACTCTGACTTCTTAAGTTACAGTGTTATATATCATTAACTTCAAGACTATGATATTTGTTTCACTCTTTTGTTGTagttaattatatttattcattatatatttggTAGAtagtattaaatttaatttacttgTCAACTCAACAGAGGTAActgaca-ttttttaaatgaactatagtagaattaagaaaaatactGGTTTTGTACATATACagtaatatgaataaaaataattatagctgAAG---CTTTTGAAAGCAACACAGAATCTTACCA-TTTTCTTCTACTGTCTGAACTaacttccttgttcttttttttaatttccttattcTTATACTTGCTGATAC---CTACTGAGAATATATAAA

a score=101427
s chr3           148628373 4599 + 160039680 [encoded data, 4878 characters]
s HiC_scaffold_1 135307625 4352 + 233722169 [encoded data, 4878 characters]

a score=26943
s chr3           148633724 1268 + 160039680 AGACGTAGATACAAGGGGTAGAAATACAGGCTGTGGGCCAGGGTTAGACAC----ACTCTCCAATCAGCCTCAGTAAGAGGcttgacctctgtgagtttcagtttccacttctgg-aaattgtaataggagaacagcct-----------cagcaaggattaaatgagataaatgcaCATTTCTAAGTGTGTA-CCCAGGAGCCGGTCCTTA-GGCTCAGCTGGTAA----CTAATGACAGCTTCATACAATGCACTTTCAGCATTATTCTTGAGA---TGCCTGGCCTGAAGTTTGTACACCATTGCCCTGGGTTTCCACTGCCCATTGTCAACAAACTCTGGCCATCCT--AAGGTTCATCGTAGAAAAGCTTTGGTTTTACGCGCTAAGACAGCAGTTTAC-AAGTAACAAAGGGCTGCCTGCTGAACACCTGCTTGTAGTTTACCTCCTCAC-TGCTAGATGACACATTAGCCGATCAGTCATAAAGAGAAGCATCAAAAGGTGTTTGCAGGCTCAAGCCCATGCAACCGCCTTGGCTCTATGGTTAAAGTCCAGAAGGAACACGGGTATCTAGATGATTTTCCTGCTAGCATTTTCACATGTATGATATTTCTTTGTTTAATGATTTAGAAAGTGCCCTGAGATAAGTTTTGATCCAGCAGGCTGGGTGTACAAACAGACA--GGAAAGGCCCTGTGGGGACTTTCCTTTCTGAAAGCTATAAGGAATACACTAACTATGGACAGGATAAGGAATGTGCTAACTATGTAAAACCTACTACAGTTATGCACAGGTGAGGTTTCAGCTGGCCACTTGGCTCTCACCCACAGGCTGGGAAACCCCCAGAACCAATAGATCTTCTTCTGCCTGACAG---GTCACATGTTGGA-TGCCTTCAGCAAAAGTGTTTAGAATTGGTGACAACGTCTGT-GACAGCTTCCTCATGGTTCTCTCATTCCCTCTTCATAAAGTGCTATGTTCAGACATAA-TCTGGAATAATAGATCATTCTT--CTGAGTCGAGTTCCCCAGCGATGAAAATTCAAGTGGGTAAAGGTATGTTAAAGTCGTAGAATAATTATCCCTCAACTAGAGGGAAAGTGGCTTTTACATGAGTGCAAACAG--CCCACTCTTTTTCCAGGTTTCAGCAGCTGCATGTGGACA-TGACATGTTATTAAGACTTCCACCGAGTCATCTTTTCAGAGAGATAGTGATGGAAATGTATAGGACAAATATGTCAAACAGAAGAGCAGCTGGCCAGTGCTTGCTTTGGCAATGTTTAATTAAATCTTCAAATTTCT
s HiC_scaffold_1 135313098 1208 + 233722169 AGAAATCGAGGCAAATGCTTTAAATAGCGGCTTCGGGTCAGCATCACACTTCCTTGCTCTCTAAGTGATTTTAGCAAGTGACTTAACCTCTGTGAGTTTCAGTTTTCACTTTAGTCAAGTGGTAAAAATAGAGCAACCTGGAAGAGTTCTTAG-AaggattaagtgagataaatatAGGTATTTAAGTGTTTGGCATGGGCTGTGGCTCTTACAGTTCAACTGGTAAGCAGCTAATAACATT------------ATTCTCATCAGAAGTAGAAAGAGAGTGACTGGGCC--AGTGTGTGCTAAGGCACTCTTGGTTTTTGCTGTCAAGTGTTAC--actttttgtcatcttttataGTTTATTGTCACAAACTTCTGGTTC-ATGGGAGAACACAGTAGTTTGCGAAGTGACAAAGC----CTTGCTAAAGGTCTACTTCTGCCTTGCCTATTTTTATCTTACACAACACATTAAGCAATCAGTCACAAAGATAAGTCTTAAAACGGTCTCAAAAACTGAACTCC--GCAGCTGTTTCCCCCAGGTCCTGAAGTTCCAAAATGAATATAGATATTTATCC-AGTTCCCTGCTAGCATTTTCACATGTATAATATTTCTTCATGCTGTTCTTGAGGAAGTGTCCTAAGA--------GATC----AGACTAGGTGTGGAGGGGGAAGAGGGATAGGCCCTGAACAGGCTCTCATT-CTGAAGG---------------------------GGGCAGGGAGTGAGGTGAGGATGAAAAATTTGATACGATTTTGCATGGTATTAGTTTCCACTGGCCATTCAATTCTTTTCCAGATGACAG-AAACCCAGAGAACTCATAGATCTTCTTCCTCCTGACAGCTCTTCGCACCTTGGAATGCCTTCAGCAAAC-TGTTTATAAGTGGTGACAACATCTACAGACAGTTTGCTCATTGTTCTCCCATTTCCCATTAAAAAAGTGGTATGTCTAAACATAAACCTGAAATAATAGATCACTGCTGCATGAGCCTTG--CCCCAGTGATGAAAATTCAAGGCACGCAAAGTATGCTAAAGCTCCAGAACAACTCTCCCTAGGCCCAGGCCTGGCTTACTTTTAGGTGAGGGCCAGGAGCTCCTCCTCTTTGTCCACATTTCATTAGTGAAATGCATACACTGACAGCTTATTGAA-------------CACCTTCCCGAAG--------------------AGGGCACAAGCATCCAAAAGATGAACAGCCAGGTAGTCCTTGCCCAGCCAGCCTCAAAGAGGATCTTTAATTTTCT

a score=111308
s chr3           148640313 3546 + 160039680 CTTTATAAATGACTCCGTTTGAGCTATTGAGTTATAGAAGGAGAAAA--AAGAATCGAAACATAAAGGGAATCTTTGAGCCAGGAGTACAGTGTGGTAGAAAATAGGAGACTTGGGCCTTGAGGCCCAACTCCCCAGGACTTTATACAAGGCCTGGGGAACTTAATATATATAAGAATGAAAGTGACATAGATTTAAGCAAAGAGGACTACA---------------AGGGCTGGGT---GGGTCTCTTCTTC--CCAGAATGATGGGAATAGAAAGTAACTCA-------GAACTCTTCCACTCA-AGAGCATTCCAATTTGTTACCACATTCCAAAAACATATTCGCTGCAGTTAATAACAAGGAAA-ACTCAC-AGGATTGAAATCTGGAACAGTTTTCTCAGTTCTGAAAACTCCAGAAAAGCCAAGAGAACATGAAAGAGATGCCTACTACCCAAAGCCATGCATAGCTGGAGCCAAAATTCCATTAAAAAAAAAAAAGCCACTTCACACCCTGCTGCTGACAGCCTGTTCCCTTC-----------TGCTTTTCAAAATAGGAAACTTCTCTCCCCATGGATTGCTTGACCAATTGCCTTTTGCCAAAAAAGGCAAGA-------------ATTCAACTCGCTTTGGTCTTAAATCATCCAACTGTTGGCAGCCAGTCCCACAGTCTACCGGGAGTAAGTGAGGAGGGAGAGATTAAGGACAGGACACTTTAAAGCAAAACGAGCCAGAGCACTGTTTCATCTGGATGACACTGGTCTTGGATGAGGTTAGGTGA-GGGAGGGAACTCACTGTGATGATCAGGAAAAGAAATATTCCAGGCAGGAAGGAAGAGTCAAGGG-CTGTCTTAtttttttttttttttttttttttttttttttttttACTACTTGGGGCCTCTGTTGAGCAAGGGCATATAGAAATACGCATTTTAATGAGGGTCTAGACTCTGCTAGTCCCATTTTGGTTTCTCCTTTCCCACTTCTGACTTAGAAAGAACAATGATAAACAA-TGAGTCTCTGTGTCAGCCCTTGGCAG--------TGAGGGTCAATTGAGTCCCTACCTGGTGAGTGTCCATTGACACCTTGGCTGGTGAGAGTCGCTTCTCTCA-TCTCAGTTTGGGCATCACCATCAGGATGAAGAGAAACACGGCCCTGGGTGTCACCGGGGGATTAGAACTACACCTGGCTTTATCTGCTCCGTGTGGAACTGCATTCGGAAGGAAGCCCGGACAAAGCTTTTC---TTTAAATTAAAGGAACACGTAGGGGATGTCTAATGATCAGAAAGAGTGAGTGGAGGGTGGGAAAGTGTTTGAAATCATTTCCTGTCATAATCCCCTCCCATTGCTCTGCATCTCTAATATAGATCGCCTGGGAAATAATTTTACAGCATTTAAAA-TATCTCCCACGTTATATTATGAGCTGTTGGGTTTCTATGGTTTGAAAGAGCTATGAGACTGCAGCTTCAAGAACTAATAGCAAAGCATAAAAATGCTGGAGTCTAATAGAATTCAGCTGATTGGAGGCTGGAGCCAGGGATG-CAGGCATTCCTGCACGCCCAGCTCAACACAGAGAAAG--CCATAGCTGG-AGGGA-GCAGCAGCAACTTCCTGCATGTGTTGTTCTCCACATCTTTATCTTCTATTCT--TTGTTCCTGTTGGCTTACTAATTAGCTGTGATTTTTTTTAATGCCCCTTATAGTAGGTTAATTTTGTCTAACTCACCAGCAGGGGTTTTTGTAATACATAATTCACAGAGCAATGTCAATGATTAAAATTCTTTCATTAACACAGCACCTTAAAGATAATAAATATGAAGCATTTAGCTCCCAATCTGTGGGCACAGAAAACTTCATTTCTTGTGTAGGGAAAAAAAAAGCTTGCTCAGATGA-TGGGCACTGGAGAAAAGGAAAAAAGAGAGAGAAAGACTAGAGCCGGAGTCTTAAG------CTAGTGCAAAGACAACCAAATCAGAAAGTACTTATTTTAAGCTCTGTAATTCCACAG-GGGTTTTCAGAGAAAGAATTCTTGAAATTACGCTGCCAAGGGA-----------------------CTTTTTCCCCCTATCCTTTTAAAGAGCCATGGTAGCATTGAGGCTAGCCCTCTCCAGTGAGAGTGGACATATACTGCAGAGAAAGACCTGTGTGTGGCAAAAGT------GGCTTCCAGGTGACCCTTCTCCATTCTATTCAACAATCTTGACTGCTCTGACT-GTGACTGTGTGAGAAGAGCAGGGCAGTCATTGGATACAGAGGATGAAATTTCATTTAGAGAAATTTTAATAACTCCTAGAACATCTGTCCCTCTGAGCCCTGTC------TACCCACCTAGTCACATGTGAGTCTTATATTTCAGTTGGTTAAGTGTAAGCTTT-TTTGCCTCCATGTATTCACTCTCATACAAAAAAAAAAAAAAGATAATAATCACAAATGCCTTGGCAACAGCAGCCAAGAGAACTGAATCTGATCGCTAAATGTGATTTTTCTTGGAGCCTTTTCTCTCAGTG-GTTGctctctctctctctctctctctctctctctctctctctctctctctctGTGTGTGTGTGGGGGGGGGGGGGCGAGTGTTTCTTCTTTCTCTTTTCCAAAGATGAATCAGATTATTTTAAGTTGGATATTTTTAAAGGAATGAAATATCTGTATTTTTTGTAGCAATTACATATAGCACTG-TCTAATTTAGAAAATTCTTCGCCAGTAAAGATATCAGCCAATGCTAGCTTTGCCATGCAGAAATCTTGAAGTTCAAAG-CACATACGTGGAATTAAAA-TCACAAAATTTCTACCCTGTCCAAAGGTTATGGCTCAGATTTAACAAGAGGCCTCAACATAATGCATTTTCTACTCTCAACCCTGGTTCTAATAGGTTTGTCTCCAGAACCAAAA--CAGCATCAAACTTCCCCCTCAATTGGCATTTTGAGCTT--AAGAGACGTGGAACAG------GATTGCTGGTGGCCTCCAAATACATCATCCATTCCAGTAAATAGCCTGTCCCCTTCAGAAGCAGGTCAGCAGCAGGCCAGGCTGAAGAGACGCTTGTGGACCCGTACC--TGCTGGCATGTTCCCATGGCTAAATCCAAATATTTTCTATTTTTAGTGGATGGTGGCTTCCATTGCTCTCATAAGCTCCAATAATTACTCCCATTTTTTAAAAGAAACTGAGCAGTACTTGGCCCCTAGTTAAACCCAGCCACTGTGTGAGTA---AAAACTGATACTGGATACTAGAGGTTGAAAGTTGCTACTTGTCAACTGGCATATAGGAAAGTAGTAATGAATGTTTCTA-TTTAAAAAAAAAAAAAGTAGAGAAA-------------------------------------------TTTTAATTTCACATGTATAAACCAAAAAGAATGGATTCCCCACCGCCACCCCCTTGTTTCCAGGTACAGATTAAAGTCTGGGTATCTTGCCAAGCTTGGTCAACTGATTTCGGTTAAGGATAACAGAAGAGATGGTTATAGAAGGACTGGGATGCCAAATGACTGGGTAGCACATACATGTGACCTGAAGAACTCATGTATCATTTCTACATCGA-TGATCCGCGCTGTAAGCAACTG-ATTCATGGTATCGCCGTAGTACCCAAAAGGGGGTGGGGAAA
s HiC_scaffold_1 135317088 3465 + 233722169 CTTTATGAATTACTG-GTCCATGCTATGCAGTTATAACAATCAAAAACCAAGAA---AGACACGTAGATCACCCTTGGGGCG-------ATTGTGGTAGTAAAGGACAGAACTGGACACTGGAGT-----TTCCTAGGAC-------------------AACTAATGTA-ACAAAACTAAGAATAGCATGAATTCCAACAGAGAGCAGGAAAGTGGCCAGAGGAgagagagctgagtccttggccTCCTCTTTAACCATGAAGATGGAAATTTAAAGTGACTAACTAAAATTAACCCTTAGACTCAGAAAATGTTCAAGTTCCTTAAAGTATTCCTCTC-TGCTTCCACTGGATTTATTGCAAAGGAGACACTTACCAGAATTGAAATGTAGAACAACCTTTTAAGTTATTTAAACCCAGCAAAAGC---------AGTAAAGAAG------------AATGTTGGATATAGC-AGAGCCTAAATT--GTCACACAAGGAA-------TTCACACACTACTGCTGACACCTTGGATCCTTCAACACTTTATGTTCCTTTCGAAATAGGAATCTCTTCTTGCTGTGGATTCTTCGACCATTTCCTTTTGCCTAAAAAAGGCAAGATGGCTGCACAAATATTCAGTTTGCTTCTGTTTTCAATCATCCGTGTGTTGGCGGCTATTCCAGCAGTAAACTAGGAGGA--TGGAAGAGGAAAGATTAATGACACT-CTCTCTAAAGAACAACAAATCAGAT-----TCTCATTAGGCAGAGAGTGGTCTTGGATATGGTTAGGTAAAGGGAGAAAATTTAACacgaagaaaataaaatgaaataatccaGAAGTACACAAAAGGTCAAGGAACTGTCTTATCCTTTTT---------------------------AATGCTCGGGGCCTCTGTCAAACAGGGGAAAATTGAAATAGACATTATGGTT-GTCTCTTACCTCTGCTTGTCCCATTCCAGTTGCTTTCTCTCCACCTATAATTTAGAAGGAGCAATTATAAACAAATGGGGCCCAGCATGAGCCCCTGGCTGGCAGCCTCTCAGGGTCAATTG--TCTCCTCCCAGC-----TCCTGCACCAGC------GGAGTGATGCATGGCCCTCAATGTCAGCTTAAGGA--GCCACCAAG-----GAGGCAAGCGGCCCATGAT------------TTAAACCCAAGCCT--CTTTGCCCCCTCCCCATGGAATCGCATCTGGAAGGGAGCTTGGACAAAGCTGTGCCACTTTAAAATACAGAGATGGATGCAGGATATATGATGAGCATACAGAGTGattcaaggggaaaaaagcaatGGAAATCATTTCCCATTATAATCCCCACGAATTGCCTTACATCTCTAATATAGATCGCCtgggaaataatttaaaagcatttaaaaatatcttccattTTCTATTATGAGCCTTTGGATTTCCACAGTTTGAAGGAGTGAAGAGACTATAGCTCAGAAAACTaattacaaaacataaaaatgctcAAGTCTAATGGAACATATCGGATTGGAGGAAGATTCCGACAATGGCAGGCAATGTTACAAATGTAGCCCAAATCAAAGGAGGACCCGCATCTGATAGGGACACAGCAGTTTCTACCTAAATGTCTCATTCTCAACATCTTTGTTTTACATTCTCTTTGTTCCTGTTGGCTTACTAAttagctgtgattttttttaatgcccCTTACAGTAGGTTAATTTTGTCTAACTCACCAGCAGGGGTTTTTGTAATACATAATTCACAGAGCAATGTCAATGattaaaattctttcattaaCACGGCACCttaaagataataaatatgaAGCATTTAGCTCCCCATCTATGGGTGCAGCAAGCCTAATTT----TGCAGGGAATGAAAATGCATGTTCAGATAAGTTAGCACTGGAG------------------GAAAAAACAGAATCTGAGTTTTAGGATACGGCCAACACAAAGTCACACAAAGCAAGAAGCACTCATTTTAAGCACAGTGATGTAGCAGCAGGTTTGCAGGAAAGGAATTCT---AATAATGTTCTTGAGGAATGCAAAACAAGCAGCCAGAAATGCTCTTTCCTGACATTTCTGTGGGCAGCTCTG-CGGCATTGTAGATGATCAGCTCAAGAGAGAGTCGACATGTCTTG----GGAAGTCACCAGTGTAATGAAAGTTGCTTTGGCTTCCACGTGCCATCTCTTTGCTCTCCTCAAGAATCTTAACAGGTTTGACTCGTCAGGATAT---AAGAGCAATGCAGTAATTAGAGACAGGGTAtgagatttcattttgaaaagttttaataACTCTTAGAACATCTGTTTCTCTGAACTCTATCATTTCCTTTCCACCTACACACAAAGGattcttatatttcattttgctaAGTGCAAGCTCTGTTTGCTTCCATGTATTCATCCCAATACAAAAAG--------GGTAATAATCACAGATGCCTTGGCAACAGCAAGCAAGAAAAGAGACTCTGATCACTAAATGTTATTTTGCTTAGAGCCTTTTCccttaatacattatttttt-----------------------------------------------------------------------ttttgtctttctgttctccaATAATGAATCAGATTATCTTTTGCTTGATGATTTTATGGGA-TGAAG-ATGTGTATTTTTGGTAGTAATTACGGATAGCACTTCTCAGATTGAGAACACGTTCTTGCCTTCCATGTATAAGCTGAAAGGAACTTCGCGT----GGAAGCTTAAAGATCAAAGACATGAAAGTGGTATTAAAAACCACAAAACTGTCACCCAGTCCAAAGGTTATGGCTCAGATTTAACAAGAGTCCCTGACATAATGCCTTTTCTAAGTTCAGCCAGGGTTCTAACAGGTTCGTTTCCAGAACCAAAAGGCAGCACAAGACTTAGCCTTCACTTGACATTTTGAGCTTAGAAGAGCCCTGGAACTGGTGACCGAATG--GGGGGTCCTCTGATATGTCATCCATTCACATAAACAGCCTGTGGACTTCAGCAGGAGGTCAGCAGCTGGCCAGGCAGAGGAAGTGCTCGCAGATTTGTCCCCGCGCCGTCATTTGCCTGTGGCTAAtttc--ataatttctatttttagtgtaTGGTTGCTCCCATCGCTCTCATAAGCACAAATAAttcctcccattttttaaaagaaagaaagcaaag---agtcCTTCTGTAAGGAAAGCCAGTGAGCTGGCCACTAAAATTAATATGGAATATCTCTAAGTGAAATTTGTCACTGATCGACCCATGAAGAGGAGAGTCCTAACAaatagttctgtttttaaaaaacagagagtGAAGCAAATTGAACACATTTAGTCCAGGCAGAATTTTTAGACGAGGAGTGTCTTAATTTCACACATATAAACCaaaaaagattgatttttt-------tttccttgttttcacgTATGGATTAAAGTCAGAGTAGCTTGCCAAGTTTGGTCAACCGATTTCAGTTAAGGGTAACAGATGAGCTGGGTAAGGAATGACTGAGATGCTGAACCATTGGGCAATAGATACATATGATTCAAATAAATCAAGAATTTTATGTGGATAGATTGAATCATAACTTGAGCATCTGAATTCATAGCTCTTCAATGCCACATAAAAGAGGATGCTGAGA

a score=42271
s chr3           148648134 3281 + 160039680 TGCTAAGTATCAGCTCACTTTACACTCAGACAGATTTCCCAACCTTAGTACATAATAGAATCTGATTCCCTTGTTTCCCCAAATTACCCACTATTCTAATGGGACTAATGGATTGTTTTCCTTACAACAAAGGCCTATTATAAGCTATTAACAGAATCAATTTTAAACAAATGCATAGCTGGTTCTTTGTTTTTTAGTTGTGTGATTTGATTAGCACAGAAAGAAGCTGAAAAGCAGAGAGAATGTTGCTGTTCCTGCAGTGTTTCGTTATCTCTCAAACTACACTAGAAATGTCATCTAAGTTTCTATAGACTACGCATCCTAAAGATTTTGTATGTATAT-TTTTAACCTTAATATGTGCATAGGGTGTAC----ACGGTATAAAGGGGAAGGGTGAAATGCTTGTGTGTGTGTGCTGCCTTCTGCAGTTTCTCATGACATCTGAAGCACAACAGTTTGGCTTTGCTGGCTAGCCAATGAGCTccacactctgcctccagtgttttacagggatggtagggatccaaactcggctcctcattctcgctcaccatgcgcttcatcagtgagccaactccccatctccGTAGCTTTCCAGAGGTGGGAAGAGCGGCACCTTACGCTCCTGTCTCTGTAAAC-ACTAAGTAAGGACAACCCTTTCTACCTAAGCAGTTTATCTTGATCAACCTAGAGGCCTGGGTCCTACTGAAAAAAAATCTGTGAGAAAAGATGGTGACGTTCACAAGGTATGTTACAAGTATTTCCCCATAAA-----------CCAGATATTTCTACATTAAGC-------ACCATACACATGACACAGT-----CTCAGAAAGAGGCTGAA----AATACACCTTTCATATGATTCCTGT----TTCTTATCT------GTCACCTTTGCAGTATGATAAACCGTACCTTTAAGAACCCGTGTTATTACTTAA----AGCATGGAAACtaattataaa-tatgttttattatgaaaatattaaatCATGCCT---GTTATAAAAATTACAAACATTAAAAGTCGC------AGAAAAATAAAATTATGCACGCTAT-------AAAAAGGAAAAGTGTTTATGTGTAGATGTAT--TTTTCTATTATTTTAATGCTTTTACGAATTTCAATTCTTAGAGTAGAATCCT----------AACTAGGCAAATAGTTG-------------------------------TTCAATAAGCCATTCTAAACACCACCCGCCACTTTAAGTCTCCAGACCATAGATGATGTGaacggttgcttagcattccattgaaggaaattgctagaatctatttaagcaatcccatgttgagcgtgtagataatttcgaattttctcccctgagaacaaagctacacaaaacatcattgcagatataaatttgtacaagactctagttatACAATCTGGCTACAT----------------------AGCATCAC-ACATCGCTGAAACTATAAAAATGTGTGGAAACATTAATTGAGTGCTTTTCTCCAAAGTGGGTTCTTTTAAATACTTAATTTCTTTTCTTTGTTAGAAGAGAAAATAATATTTTTCTCACAATTTTGGTAGGTGTgagttgacaagatggctctgtgggtaaaggtcattgccaccatgcttaaggacctgagttcaatttctgagatatgttgcctccttggtacaaggaTacacaaacacacacacattcacacactcacatacacacacacacagacacacacGATGATGATGATATATTTATAAAATGTACAAAGGGAAATGGGAGGTGAAGTTGCAGTAGCAAATCTTTGTACTAACCTTTGTTGGGTGCCTCCCATCCTGCCCATTTTATAGAAACTGTCGATGAGAGCCCAGTGGTTAAACTAACTCACAGAAATTCACACAGCTGGGAATGgggaagaagggagggagagagagagggaaggagggaaggaaggaaggaAAGAAAAGCTAGATATGAATCTTGAGTTTGACCCCAAGAACAGGACTTTCGTAAGGCCCGTGAGGTGATACATATCAAGCTCATCAAATCAAGGCT---------GCTCTTCGATCCTTTCAGAACACTG--------CAAACCTAGCTTG-ATAAGAAGCACTAAATCGGATGATAAACGCCTGA--CCAAATGCCCCCTTTTGGAAAATGGGGT----TTGCTGTTTGTTCGTTTACATGGAATTAAATCGCCTGGTCCCTGCATTGTTTGTGTG-----CTTTCT-------------------------------------------TCGGtttttgtttgt---------------tttattttgtttttttgtttttttgtttttttgt-----------------------------------------------ttttttttttttttttAGTTCTTTTGACAAGTCTATGCTGTTTTCTTCCCCTTCTTCGAGA-------CCATGCACTTGCCGTGGCTCCA------------TGGCACACCCATGATCCTTACTGTCTAGGTGGGAATGAATGGTACCCACAGGACATTCTAGACAACCTTGGCATTCTGATTGGCCACACTTTCTTTTGAGGACTGTGTGACTGGAACGCACGCTCTTCGCATTCCAAGA-CATTGCAGAATCCTACCGGTGGAGAACAAAGATTTTACACATCACAACAAAGATTAAATGTGATGAGGGAAAATGAATAGTTCCCCCCATCGATGACTCCTTCCTTTGGGTGTTTGCACAGGCGTGACACCA-AGATGGACAGCTGAACTTGGCCAGGCGATTCCTGCAATGTCAGGAACAAAGGCTCCCTCTGTTCCAAATCAGAGAAAGTAAAGGTCGAGGAAAAAATTAACTTTGAAAAGAAGACAAACAGCTCTGCTCATATTTTTAAATGGATGCAATTATTCATG---------------------ATAAAAGTTGTTATCAAAACATGAGAAAGTTTTAACTATTAAGGAG-----CTGTTTTTCCTCTTCAGC--TTGTCTCTATGTTCTGTT--TACTTTGTACAGTTTGTGTTTCTCTGCTTATGTTATTGAATGAG-GATATTTTCTTGGGACCCTTTACCC-ACTTTCCCTTG--CCTAAGATTACAAATTTCCTCAAACATGAATGAGGATCTCTTGCCAAA-----CTTCCCTTCCATCTCCCAAGGTTTGTTGAGTGCTTCCTGCC---CCCAAAATACTCTAGCTCTTTAAAATTATTAAGAGTTGCAGGGGATGACA---------------CCCGCTGAGAATGGCAGAGATCA----------TATCCCTGAAGAGCCGATCCTTTGCCAGACCCAGCTCAGACCTCAGTGCTTCCCTTCTGGGCATTGTTTCAGCAACTATACCTGGTG-GAGGATTGGGGGTTATTTTCTCTGCAGTTTGTTGCTGGCGTTTGTCCCTGTCTCTGTCATTCTGTG----AATACACCACTTATATTTAGCTTACTGCAGTTTGTGG--TCTGTTTATGTTTGACTTAAATGTGTTT--GCTACCATGCATTAATACCAACTCAGGGGTATACTGCTGAATGATCCCAGCAACT
s HiC_scaffold_1 135323210 3202 + 233722169 TGTTACATGTCAGCTAACTCCCCTCCCAAGCACATTTTGTAGTTTTACTATATAATGGAATCTGATTTCCTAAATTCTCCAAATTACTCACTATCCTAATGGGACTAATGGATTCTTTTCCTTACAACAAAAGCCTCTTATAAGCCATTAATGAAAtcaattttaaacaaatgcatagcttgttctttttctcttagttGTGTGATTTAATTAGTCTAAAATG--GCTAAACAATAGTACGAATATTATTGTTCTTAGGTTATTTCATTACATTTAGAACTGTATTACAAATGC--TCTG------------------------------TTATAcgtatttattttaaacttcatCTAAACTTCG---GTACAAGAAAGgtataattaatgaaaat-aaatgaacgaGTAAATGAA-----------------TTAAACCAACTTTaataacactattttttttttctagtga---atTCACCTACATACCCGCTGTGATAGGTTTTACATCTAT---------------TTGGTTTcctatataataataatatatattt---------------tcttcacaTTCTCAG---TCCAAATCCGAAA-----TACATCTT-----------TATACAAATGACCAAAAAATAATGAACTGTTCTacctaaacattttattttgaccCATTTAAAGGAGCTaattctaataaataaaaaaatgt---------ttgtaaTTGTTGAAAGATGCAATGTAAAAATTTCTGTATAAAATAGTATTAAGCCAGACATTTTTATAATGAGCTTTACCAACTATACAAACTCCCctgtttttctttaaacagatgcagaaaaataatACAC----TAAATAATTACTTTATAATTCTTATCTTATCCATTTATCTTTACATTTTAGGGACCAATGCCTCCAATCAACTGTG-TATTATCTGAATATAGTCcaaaaaataatcctaaattaTATCTTATTATTACCGAGTTAAATTCTGACTATGGTTGACAAACCAAGAAACATCAAAAATGACCtcccaaaatcaataaaatcatttataataTCAAGTTAAAGAGACAACAGTTTTAACATGTAGATGTATAAGCTTCTACTATTTcaatacat-----aattttaatttaaaatgtagacTCCTTTAGTAATACAATCAGGCAGTTTttgggatgttttgttttgttttgctttgctttgtttttagtaAAACACTGTAAACATTTCTCATGAC-TTAAATTTCCAg-ctgtgaatattttaaatg---acttaGTATTACATCAAATCCACTTGCTATCATCTGTTTGAGCAGTCTCATGGTGGACATGTGGATCATTTCTAACTTTccccagtaaaaacaaaattgcaagtaacattcttttaaat----atttgtacaaTATCATGATTATATCTTTTGGCTAAATTTCCAGATTTGGTTTATTATTGAGTATCACTACATTGCTGGACCTATAAAACTGCATAGAAACTTCAATTCA--------TTCAAAAGTGGGCTCTTCTTACGCCTGTACTTC----CTTcattagaaga-aaaacagaattttgcaGGCAAT-------AGTTTGAGGTGA---------TCT---------------------------------------------------------------------TACA-------------ACACACTCTTCAATGCAATC--------------------------------------------------------------------------------------------------------CTATTGAATAGATACCATTATCTCTGTTTTAGAGAAGAAGAAGAGACGTGCTTA--AGTTAAGC-AAGTGGTGCAAGCTCACACAACTGGta----ggaagaag-------------------------------------------aaagacagatTTAAACTGTGGG-CTGACTCCAAGACC---ACACTCTCTAAATCCGAGTGG-GACACATGCACAGGTGGCTGAGGAAAGGCTCTCCACTCGCCACTTCATTCTTTTCAGCATGCCAAGAACAACCTAACCTAactggaagaagaaaagacaaatcaaacCATGAAATAATGATTTTTGGTTTGCGCCTCTGAGGACTGGAATCCAGTTGTTTATTGTTCCCATCTTTGTAATCAGATTGGGTGATCCTTGCCTGGTTTTTGTgaattcctttctctctttctgtctctctctgtctctgtctctctctgtctctctctctgtctctgtctgtctctctgtctctctgtcttctctgtctctctgtctctctgtctctctctctctgtctctgtctctctctctctctctctctccctctctctctctctctctctctctctctctctcctttctgaaTACTTATGAAGATTTCACCCACTTCTTTTCTATGTTCCTTCAGGTATTTTCAAGGGGCCCAACCCCGAAGGTGTGTTTATCTCATGCT-CTCATTGTCT-GGCCGGGTTGAAT-GTCTCCACATCACAGACACGACAACCCTAACATTGCAATTGGCTACACTTCCTTTTGAGTACAACTCTACAGGAATGTACACG----GCACCCCACTAGCAGCGCAGAATTGCACTGGCATGGGACAAAGATCTTACGTATCCTAACAAAGGTCAAATCAGATGAGAGAAAATTAATGGTTCACACTCTCCATGGCTCTTCCGATAGG--GTTTATACGGGCATGACATCAGACAGGGAGAGACAAATGTCCCCAATC-AGTCTTACA----------------CATCCTGTTTTCCAAACCAGTGACACTAGAAGTTG-GggaaaatttaactttaaaaagaggACAAACACTTCTATTGTCATCTTTCACTTAATACAATTAGTCATGTTTATGTTTGccaaatataaactgaaaaatgtCGGCAAAATCTGAGAAACATTTAACTATAATTCGGTTcatctatctttcttttctcactgtCATCTCTATAAAATGATAGTTATGtgtatgtttttcatttgtttgtttactttgtttAACTAGAGATACTTTCTCAGGACTCTCTGTCTAACTGTCCTTTGTTCCTATGATCTTAATCTCCC----ATGTGCCTGAAACTTTCTTTCCAAACTTATCTTTCCTTCCATCT-TCAAagtttattgagcacctgctaCCGTTCACATGACACAGTAGCTCTTTAAATTCATAAAGACTTAC-GGGGAGGGCAGTGCCTTGGAGATTTCTCTGTGAGGA-AGCAGAATTAATGACAGCATGTGTCCCTCAAGAGCGGGTATTATAACAGGCACATATCATGTCTCAGATGCCACTCTCCAAGAGTTGTGCAACTAATTGTACATCACGTAAATATTTGGTTCAGTTTACGTTTTGGGTTGGTGTTGGCGTTTATCTGTGTATCTGTCAGTCTGTTCACCCATATGCCACTCATATTAAGCTT-TTAGAGGCTGAGGAATCTGTTTATATTTAACTTAGATGTTCACAAACCAGCACACATTAATACTAATGCAGATGGGCGGTTTTGAGTTATTTTAACAGtt

a score=53111
s chr3           148653912 1993 + 160039680 CATGATGGATCAAGATTCAGCCCCC-TCCCAAATGTGTTATCAGAGTATACCACATAATGCATACATACATTGCCTTTAAGGGAAAAAGTACAGTCATCAGCGTGGTCTGCTGGAGAGCTTGTTTTGGGTCCTGGTCATTGATCATTCCCCTGCTCCCTGGAAAGAAG---TGAAATGACAAGACAGTGACAGAGTG-----GAAGGAGATATTAAATCATATTCAAAAAGAAACAAATGTGAGAGGCTTTGACAGCAACAATTTGTGAGGCCACAGGGAGGCCTACTCCTGGGATG-GCAGTGAATCAAAATGATCAAATGATTTT-ATTAGTTTGCTTTTATTAGTTAGATCTATTACCTTTGTTTTTTTCATGATCAGGGGGGAAAAAAACAAAGTAATTATCATCAGTTTATCAAGACGGGGCCTCACGGAACATG--TCTACCACTGCTTCTCCAATTCTGCATTGCTGA-GCTGTGTCTGGTGCCT--TTTGCCAGCTGCTCCTTG--CCTCTACCTCCAACCCCCTCCATAAAGAGGGTGCTGGAATGTGTCTCGCAG--------CAACTCTCAGAAAACCGCTTCACAACATGGAGAGAAAGCTACAGTGTGTGGCTATTGTATTTAA----GAAGCACTGAAGATGGACACTGCTCAAAGCTGAGAGAGGGGGAAATTTTTAATTTATCTTCAAA-CCCAGACTGTAAGCAACGGTGC-AGCAATCACAGCAGACAGCCGCCTCACATGGCTGCCCTCCTCTGCAAGCCCCTGAACCTTACCTGGTGTAATCACATTCTCTGTGGGAGAGAGGGGATTCTGCTACCAGGAGAGCTAATTCCTAGGCCTTCCCTAAGTGAAGGCGAGCAGTCATTATAAAGCATACCAGACTACCAACAGGCATTCTGCCACAGAGACCGTCGTAGACAGGGCCGAGACAAGTACCAAGTGAAAGAAATATTATTATCTTAAGGAGTCCAATGCTATAAAACAATGTG-AGAATGATGAGGAAATAATAAATGGGGATTTTTA----AGTTAATAATAAAGATGAGATGGGTGCAGAACCTTGCTGTCCTGTTTGTGCTTACCCTGAATGGAAGGCAATG---------------AGATAACTC---TGAGGAAGAAAAGTGAGGGTGTTGGTCGATAGCATGATGTTTCCCCTTAATGAGAAG-------------------------------------------------GGG-----------------------------------------------------------------------------------------------------------------AATAATAGTTCACTTTGCCAGTGCCCACCTCTAGCTCAGGCTCAGTGTTGGTTCAGAATG--GTGTCCCCTGGGGATTCCAGGGTACTGGACTTGTCTGGTCTTATGACCTTTGACAGTGCCA------CAGCCCTGCTTTAGACTGGAATAGTCACCAATGGCAACTTGTAGCT-------------------TCTTCTATGAGCTTcacacacacacacacacacacacacacacacacacacacacacacacacacacGACCCCTGCGCTGGCCCCAGTCACAGAGGCACAACTAATGCAAAGACACCCTTGTGGAGGTGAAATTCGTTCATACTCAGGCGTTCATACTCAGGAGATAAAA--------TGTTAACTTGGTAGCAA--GTGTCTTTTCAAATTTCGAGCAGACAGACACAGGTGACATTAGCAGGCTCCTGTTAAGACCTGCACTCTGTGACTGCAGAGCCTCGAGATCCTGTACCCCTTTGAGGTGTGCTTAGTGTCTTTGCTGTTCCGA----TGTCATTCCTTGCAGTGTGTTTCTCAGGCAGGGAGAGAAATGCCTGAAGATAGGAGACGTTTTCAAAAGT-AGCCTCAATTATGCATCTGTGGTCCCGTGTGCACTTCACTTAGGAGGCGGTGGGCCGACTGCTGATGACATTTCAATGGCAAGAATTTATATTATAGAAAAAGTTCCCTTTCAACATCATATTTTCCAACCAGCTGCA-GGCTCCCGAGTCAGTGTGATGAGGTGGTTGATAATAGGAGCTGTACAGGCAGAGTACATCAGGAAACAATTCTCcaggg---------------------------------------tactgactcggttctgaactatctgggcaagggtgtttaagtagcaaacaaccttggaagacatgatg
s HiC_scaffold_1 135330586 2193 + 233722169 CATAAGGCACCAAGAATCAGACCCCATGACAAATGCCTTATCAAATTGT-CTGCACTTTGTGTAC-Catgccatttttaa---aacagaCACATTTAT----ATTATCTACTAGATAGCTTACTTTGTGACCTGATCATTGATCATTCCC-TGCTCCCTGTTAAGAAGACATGAAATGATG-GACAGCAacacagtgagagagaaagagacggTAAGTCACAGCCCAAC-GAAACAAATGTAGAGAGATTTGACAGCAGCAATTTGTGAGTCAACAGGGAAGCTCACAAAGGCGAAGTGCAGTGAATCAAAATGATCCAATGATTTTTATTAGTTGGGTTTTATTAGTCAGATCTATTACCTTT----TTTTTATGACCAGGGT-----AAAACAAAGTAATTATAATCAGTTTATCAAGACAGACCCTCTTGGAAAGTAGATGTGCCCCCA-TTCCCTGATCCTGCTCCACCCACACTGTGCCCACTCCCCACCCTGATGAAGAATCCTTAGCCTTCCAACTCATTCCGCCCTCAGAAGGTGGACGCTGGG--------CGCAAGAAACAAACATTTCTCATAAAGCAGCTTCACAatatcaagagaaagagatagtgTGGAGCTGTTGTATTTAAAAAGGAAGCACTGAACATGGACACTGCTCAAAGCTGAGC-AGGAAGAAAATCTTAATTTATCTTCAGGCCCCAGACTGTAAAT-ACACTGCTGGCACTGGGCGCAGAAACCTTCCTCCCGCCACTGGCCTCTTTGGCAATCCCCTGAACCTTACCTGGAGTAATCACTTTCTCCGTGGGGGAGAGGGGATTCAGTTACCACCAGAGCTAATTCCTGGGCCTCCGCTGCACGGAGGTGAACAGTCA--GTAAGCCAATCCAAATTACACGCGAGCCCTCTGTGATATAGACCACTGTAGATAGGGCTTAGACAATTACCCAATGAAagaaatattactattttaagaAATCGAACATTTTAATACAATGTGAAAAATGATGAGGGAATAATAAATGGAGTACATAAAAAGagctaataataaaaaagagcttGGTGAGAGATCCCGCTGTCATATTTGCATTTACCCTGAAACTAGTGCCATGCACATTTCTAAATGCAAATAATTCACAAGAGGGAGCAAAATGAGGATGTTAATA---ATCAT----TTTTCCCTTAATGAGAAGCTGTTCTTTGACTGAAAGGTGTTTTAGGACGGACTATGTATTAACAAAAGGGTTCCCCCCGCCCTTCTTTTTTAGAATAAGTGAAGGCAGTTGGGCTTCATTCTGGGATTTGAAGGCAGCAGCGTTAACAGTACCACCATaaatattatttctacatttttaaataataaaaactcacCTTGTCAATGTAAAATGCCTCCTTGTAGTGACTTTTAATTCAAAATGCTGTATCTTCTGGGGGTTCCA-GGTATTAAA-GTGTCTTTCAGGATTACTTTTACCAATGTCAGATTTCCAGTACT-TTTCAAACT--AATAATAACTGGTGTTGACTGACTGTTAAATTTATATGCCAGGGACTGTACTATGAGTTTAACTGATGT-----------------------TGCCCCCACCCTAGAGCTAATGAAAC---------TCCCAGAGATGGGGATACAACTCACACAAGGACATCAGCAAGgaagcagaatttttttaaactcagaAG------CCCAAGTATTAAAGCCTGCTCTTTCTGCCTTGGTAGCTACCACCTCTTTTTATATTGTGAACACGCAGACCCACGTGACATCAGCAATAGCGTGTAAAG-CAGGCATTCAGCGACT--AAAGTCTAGACTCTCCGT-TCTCTTCACACTGTGCTCggagtcttttttttctctgcttttctcctgccTTCCAGTGAGCTTCTAAGTTAGGGAGAAAAATGCCTAAAGACAGGAGATGTGTTAGAAAGTCAGCCTCAATAACACATCTGTGGTCC--TGTGTACCTCATTCTGGATGCCCTAAGCTGACTACCAGAGGCATTTCCATGGTGAAAAT---TATTATTGAAATGCTTCCACTGCTACATCACATCCACCTGCCAGCTGGATGACTGCTTGGCCAATGTGATGCAGTGGTTGATGATAAGGTTT------TCAAAATATGCTGGGAGAAAATTCTCCAGGGGTCTCATATGGCTCTGCACGTCTTGCAAGCAGGGCTACTGACTGACTTTGTTCTGAACCTTCTTTTCAAGGAAGTGCAAGTGACAAAAAACTTTAGAAGATATAGTG

a score=32432
s chr3           148658116 1377 + 160039680 TTCTTTATTCTCCAACCTTCCAAAAAATATTT-------GTTGTAGAATAATATAGTATAATCTGGTAGTGCTG--------AGATATATTTTTTTCCTTTTTC-ATGCAAATAACTAAGAGAATTCCTAGTTTTGACATTATTCTCATT-----TATTTTACCAGAGTAGCAGCATTC--------AAGAATCTGGGGAAATGAATACATGTTATTTAAAACTTATTTGATCCATTGACCAACAAACAGGAAGGTCTACACCTACACCATTCCATTTTCATGAAAACatttttttcaa---agatgtgcagtggagagtccggcaagcttttgtatacccagcatccctccgggacaggaaattctttcttgttgctaatttaaatttgttattctatagcttaagctcagttccttttggaattttcttagatacagaaaacagatgttccctcatcccTCGTTTATTACGCATTTCCACATCTCCTCCTTTAGCCTTGTCCTCGGCAGCTCTGAAGAATCCCAGAACC-TCGTCCCACAGGTCCTAAACCTAAACCATGCCACGAGATGCAGCGCTGTGCTTAGAAATTGCTCCAACTTTCCTGTATTCTGGCTAAGCT------GTCCAGAATCAGATCCTCATAACTCAGCCCAGGTTGATCAGTACCTGTTC--AGAGGGCAGTATGGATAGCGGGAAAAAAAGTCACTCT-ATTTTCCAAGAAAATTATATTCTGTCAGCATTAAGATTGTTTATCCCCTGGCGTTTTCCTTCTCTTGCGTGTTGCTACTTTCATGTCATCCTCTTGGAAAGAAATCTTGGCTTGTAATCCAAGCCCCTTA-TACAGAATAGGCGCAGCCACAGCCTCTTCTCACCACAC-----CCTCATGGAAGACAAGGAAATACTTTCTT-CATAAGCGCTATCAGCCTTTCAGATGCTCAAGGGAGATGTGTGGACTCATGCACTTTCCAGTAGCCCCTTTACAATGTGCAAAGTGCAAGCA--CCTCATGGAAGCTCTGGGAGCGAAAT--CTGGGGGCAACTT---GCCTCTCACTGTTTGGAAGTCGT---GACAAAGGCAGAGCCCTAGCTCAGCTTCCCTGATGTTGAAGTTGAGTGTCGCAACAGGGAGCTAATTTCTGGTTTTGGATTCGCTTCCTCAGACGTCCTACACAAATGCACATCCTCATTCCCCACAGTAGAAAGATGCTAC-TCAACTATTTCAATATGAAGTATCTGGTCTGAAGAGGACCTATTGGGTTATTCACAGAGAATAATGAAAGG------CAATGTCTTGAGAATGATTATCACTTAATTATTTCACAAAATACTGGCCACATTCATGTGTCAGTGAGACTAGGATTATGTATTCTTGACAAAGGAGATGGGGTGCTTGatgca---tatacagtatatgtatgtgtgag
s HiC_scaffold_1 135333750 1375 + 233722169 ttgtttattttttttccttttaaataaaattttttaaaaattataaaaaaaaaaagt-tcagctgACAGAGCTgctaaaaaaaaatgtgtttttcacttTCTCCCATGCCAATAA--AGAAGactttttattttggata--attTTTATTAGAACTGTCTTACTA---TACCAGCATTTCACTTATTAACAGTCAAGGAAAtt--agaaatgttatttaaaagtt-tttgatcCATGGTCTCACATACAGGAAGGTCAACACCTACACCATTCCATTTTAGTCAAAATACTTTTTCAAAGGCAGACATGTAGTGGAGATTATAGCAAGTCTTTTTATGCTCAACAACCCTCAAGGTCAGGAAATTCTTTCTTGTTGCTTATTTAAATTTGTTATCCTATAGCTTGAGCCCAGTTCCTTTTGGATTTTCCTTAGACACAGAAA-CAGATGTTCTTTTATCCTTAGTATATTACACATTCCCACATTTCTACATTTAGCCTTGTCCTCAGCAAA-CTGGATAATCCCAGAACCTTTTTCTCACTTGTTCTATACTCAAACAATTTAGCCATATTTATGGCTTT--TTAGGAATCTC-CCAAGTTTCCTAGGTTTCTTCCAAGTTATCATAGCCCAGAGTGAGAGCCTTATAATTTCGACCATTTTTATAAGTCCCTTTTCTAGGAGTGCAGCACAGTTAGAGAGAAA-----TTAATCTAAATTTCcaagaaa-----attctgagaaaaataatatcgtt-----------gtattttatctcttccttGAT----------TGTCATTACTTTGGACAGAAATCTTGGCTCAAGATCCAAGTTCCCAGTTTCTGACCCATCACAACCATAGACATCTTTCTCTACCCGTCTTTCCCACAGA----GAGGCAACATTTTCCCACAGGAATGCTGGGAATCTCTCACATACTCAC------------AACCAAAGCACTTGGAATACTTCACATTACAAAGTGCATGTTCCCATTATTCTCCACACGACCCCTGTAAGGTAAATTACATGTGTTCATTTGAAGCcccaaaaccagaggaagacgTCCAGGCATTGGTGGGTCACTAACTCAGGTCACCTGATTCAAAATGCAAACACCATAA-AGGGGAATAATTCCAGTTTTCATATTTACTATCTAAGAAGCCAAAAGcaaatatgga--aaaattatttaaaatgagagATTATTATATAAGTTGTATCAATACAAATTATCTGATTTGAAGAATGTCTCCT--ATTCTTCAGAGAGGGGAATTAGATATGACTTCAGTGTGTGAAGAATGATTTTCTTTCAGTGGTTTCATAAAATATTGGCCACCACCACATGTCAATAACAATATGGTT---TATTCTTGAAAAGGAGGACAATGTTCTTGGTGCAGAGTGAAAACTAAATGTACATCTGAG

a score=8013
s chr3           148660094 857 + 160039680 AGAATAAGATAAGTTACAATAGATTTGATTTTCCAGTAAAAAAAAAAAAATGAGTTTCACAAAAGGTATATTTTAGGCCCACATACCTTTGG-TGGACTTAACAGGGAGACAAGCATTTGTCATTAAATTTCAATATCTGACTTAGGAGCTTGGCTTTAAAGGCAATGTGGACCACAAGACTACCAAACTATACATTTGTTGTAC-TTTGCACCTACAGTGTTTGATGTACGAAGACCACCTTCTGCTTTCCTTCCTGTTGAC-TGTGCTTGGATAATTTGGTGTGTGCCATGTAGTTTGATATTACTTGCTTCTTAGAAGCTACATAATA----TCATGTATAGCTCATGTTGAGAAAGCTTTGCAGTGAAAGCCAGATCAGTAAAAACAGCATT-CATGTACCAATGACTCAGCATTTGTCTAGGGTAGGGCAACAGTGGGAATCCATGATGGGTACGTAGGAACATT-----CTCTG-GTATCCA---------------GGCATCTTCAAA--------GTTTATACTACATTTGCTAATTAAGTGACATCACTGCAAGTTCTGCCCTTCAATAATTATCTTTGATGGACTTGGTCGTTTCTGAGCCA-------GATA------------------AATTACAGTTGCTTTTCAGTAAAACAACGTTTAGCTTGGCTTCTGTTAAAGAAGAACAGAGTCTATTGAAGGAAGAACAGAATCAGCCAAACGACCTGCCATTGAATAGATTTATTCAAAGTGACATTTT--ATTTTTCATTTCTGTCAGGAAAGGGGAAG----AGAAACACAGAAGACCAACGATATGTTGGCTATAGAGAGGAAAACATAA-----------------------------------------TATCTACAGAAACATGTGGCGTGAGCCTGCATAAATAAAAAGCTGCCATA----AAGCAACATCAT-GTGATTTG
s HiC_scaffold_1 135336522 890 + 233722169 AGGACAGGATAAATGACAC---GTTTGATTTTT-AGCCAAAAAATGTGTCTTGATCTCCTGGGATACTCATTTTGGGCCTTAATACCCTTAACTTGATTTTTAGGGAAGGTTACTATTTGCAGCCAAATCTCTGTCTTTGGGCGAGGAGCT-------------AATGTAGGCAATGAAAATATC---TGGTATACTTGCTATACATTTGTGC--ATCATGTTTACCTCATAGAAATC----------TTCAATTCAGTGGCCCTGTTTTTCAATA---------GTGTCAtctaatttta-attatt--catCCTTGAAGACATTTCAAAGGAATGAGGCTAAGCTCC--------AACTTCTGCAGCAAGAGTTAGAGATCACAGATTATCATGGCAAATGCCAATAACATGATATTTGCTGATGGTAATGCTACAACTGGCTTACGAAAAGAACAGTTAGATTCATTGATGTCTCTATGTATCTATCTAGTAGAAATACTGGTATCTGAAAACTAAATCAATGTGTATGACATTCGCTAATTAAGGGACATCATTTCAAGTTCTTCCATTTAATAATTGACTTTTACAGAAGCTGTAATTTCTAAGCCAAAATTATGATGCAAAACAGTTACAGATGTAGCTACAGTTGCTTTTCTATAAATCAGTGTTTAGCATGACC---------------CAG----TGCTGAAAGGAGAA-AATGCCAGCAAAAGTTTCTACATATTAATAGATTTGTTCAAAAAGCTCTTTTTAGATGTTCACTTCCAT--GTAAACTAGAAGTTCAAGAAATatggaa-atagaaaatatg--aaatataggAAAGGGAAGATAAATACCAGAGATCATTTGTGCTTTCCTCTCTAGATATGAATCTATCTAGAGAAACTTGTAGCATGA----AAATGAATAATTAGTTATGATAGACGAAGCAATACCATGGTGATTTG

a score=45976
s chr3           148662294 1716 + 160039680 acatataataaataaataaatctttaaaaaaaaaaaagaAGTGAACAGGTTGAC-ACCGGCAATGGGCACCTGGCGACTAAGCCAGAGGCAAACAGGTAGAAGGAAGCCATATGCTAAA-TGGGAGAGCAACCTT---GATGTGTTTTCCATTCTCCCACTGTAAAGCATGCATC-TTGCCAGGGGTGGGTTACATATATATTCC-CCACCAGTTTCTGTTTTGAATCCATACCTTTC--------------------------TATGGAGAGGGACA----------------GGACAGGTATGCT---GAGAGCCCATGAGATTT------GTAGAATGGGTCTAT-----------------------ATCCTC---CCAGAGTCACTGATATTCCTGGGACCCAATGCCTGATT------------CCTACTTTAGATTCACTAGCTAAGAAGTCAGCAAATATACACAGAAGAACTACATGTGAAGTCAAGAACTGAGCTGCTTGACTAGACagagagagggggagagggaggaggagagggagggagagcaggatgcaggaaggaaagtgaggaaggagaggaggaggaggaaggAAGGAAGAGAGAAGAGAAAAGAGCCATGTGGCATGCCATTACCAAATATCCAACTCTTGATTTGAAT--------------------CATTT---CTTTTCTTGGTCTTCCTTTGATT---AAGAAAAAGCAGAACAACTAAGCACAAAGGGTCCCCCAGCCCACAAGCAGACCTGTGGCCTAAGGAAGTCACTGCTGTGTTTCCACCTCCCTACTTGCCCTGAATGGTAAG-GAGGCCAGGCCTAGGGCAGTTGCTTCATGACA-TCTCAGATCTTTGTGCCTTGGCTCACACGGTGTAAGAAA----TCCTGGGCAGGATGAAAGATCACTGTTAATTTATAGCGGTGCTAATGTTTTCCATTCAACACGTGCCATGCAGGCAGATGGCTCCCAAACTTCTTGATTTCTGCTCTATAGCCGCCACAGAGCGAGCCCTGCTTGGCTCAGGATTCCCTGTGGGAGATGTAGAAAGAAGACTTTTCATGCTACTTCTAAAAGCTAAGGGATAATGCCTCAGTGAGCGTCACTTACCCAGTTCCTGGGCCCCTTGGTGGCAGCCT-ATTGTTCTCTTCCCAGCAGGCTGGGGGAAAAAAGTTTATCAGGAAGAAAGAAAGAGGGGGGAAAAAAACCTCAGGGTTAAGTGGAGCTCAAAAGAAATTCAAATATGCTAAAATAAAGTCTTCTCTTGGGCTTTAATTCTGGTCTTTGATTTACATTCTTCTTTTAAAAATATCAAATAATGTTTTCAATAAGGCAATCTTTTTTGTTGCTTTCATTAAAACCCAAACCTTTGACTTGAGGGCATTGTTAATAAAGTTAAATATTATGCTTACATTGTTAGCTTAATAGTAAGTGGGAAGAGTGGCTTTGTAATTGTATGATTTTCCTCACTCAAGCCGGTTCTTTTAATAAGTCGGTTTTAAAATTCAGCAGA-----TAATGTTAGGGCTCTTCTTCGGGGAACTGCTCATCCACAAGGAGGACG-AGCAGGCTCAGATCACTTAAAACTGGACAGCTAATGAGTT-TGCCCCCCGAGTCTATCCTTAAAAACTAGTTAAATACCACCGAAAGCCTGAGGCAGCTAGGTGGACAG-------------------ACAGGC-AGTGTTCAGGAGACATTTGACAATAGAGCT----------AAGCCCTTGC--------------ATGGAAATAAGTTTTAGGGTAGA-------------GAGA--------GTTGAACTCAGTTACAAAGCGTTTAGCAATGGAGGATTCATAAAGGTGTTAGAATGTTTATCAGGAATTTTTAAGAT
s HiC_scaffold_1 135337553 1779 + 233722169 ACCTATAAGAACTAATTAAAATCTTAACCACGTAAGCAAAGCAAAGGCACCAAAGACCAGGCATAGATATTTGGTTATTTAATAGAAGATAATCAGGTGGGTAGAAGACATAAGATAAAGTCagaaagtatctttcaaaaaagATATCCAAGTATT------TAAAGCACATACCATTgctagtatt---ttaaatatatattcctCCATGGGCTTTTGTTTAGAATTCATTCCTTTCCAATTATGATCAAGTAAATGTCTCCTTATGCTAATAAACATTATACCAGGAATCTAGAACCAATATACTTAAGAAAGCCCA--AGATTTCCTGAAGGAGAGCGTGCTTATTGGCAGTATGTATAATAAAGTTAATACTTGATATAGAATCACTGATGTTTCTAGTGTTTGAAACTTGACTGTTAGCAGAAAATCTACTCTGGATTCACAAGCTAATGAGCTgataaa-agaagcagagaaactgcaaatgaaaatgagaacttggcttctgtacca----------------------------------------------------aaaaaaattgat-------------------------------------agaaaa---------------CCAATATCAAATCTTCAATCCTGAATTCAAATTCCTACTTTGgatcctttttcatttttcctttttttgcctttctttttcttttgatgacAAGCTGAAACCTTAAAGCACAAAGG-TTCACCGGCCCAGCAGCAGATTCATGGCCTAAGTAAGTCCCTGACATTCTTCCAGGTTTCCATTCTTCTTTAGCACGAGGCGAGGCCAGGCTGAGGGCAGTCATTTCATGGAAGTCTCAGATCTTTGCCACGTTATTCACATTGTGCAGGAAAAGAGCCTTG--CTGGATGAAAGGTTCTTGTTAATTTATAATGGTGGTAATGTTTTCCATTCAACATGCAGGATGCACACAGATGGCGCCCATGTTTCTTGATTTCTGCTCTG----CATCACATTGCGTGCAGTGCTTTGCCCTGGATTCCTGGTGGGCGAGGTAGAAAGGAGATTTTTCATGCTACTTATGGAAACCGAAGGATAATAACTCAGAAAGAGTCACTTACAAAGTTTA-GGGAGCATTGGTAGCCGCTTCATTGTTCTTTTCACAGCAGGCTAGAGGCCAAAAGTTTATCAGGgaga---agagaccaaaaaaaaagcccTCAGGGTTAAATGGCACTCAGTAGAAATTcaaatatgcttaaataaaattttctcttgcGCTTTAATTCTggttttttatttcca---ttcttttaaaatcattaaatgatattttaaatatggcAGGTTTTTTTGTATCCTTCATTTAATCACAAACCTTTGACAT-AGGGCATGCTTAATAACATTAAATGTTAGGCTTACATTGTTAGCTTGATAGCAAGTGGAAAGGATGGCTTTG-AATCATATGAATTTTCTCACTCAAGCCTCTGCTTTTAATAAGTCAGTTTAAAAATTCAACAGACAGTCTAATATTAGGGTATTTACTGGAGGAGCCACTCATCCAAAAAAGAGCCATAGTCAGTGCAAATcacttaaaatttagaaattaatgaattCTACTAACTGAGCTTatccttaaaaattatttaaacaccACCTAAGAAGTGTGTTAATTAGACATATAGTATAGCTTCCCTTAATATTGCAAGCtagattttaaataacatttgaaaatcGAACTTAACAGTCACTAACTCTTGCTAAAACCTTCTgctatcaaaaaaatttttgagttaGATTACTtgttatatgaaaataattttattgaataCAGTTACATAAAATGTAGCAATG--TTATTAGTAAGGATACTTTAAtacttat----attttttaatat

a score=42253
s chr3           148673047 2060 + 160039680 ACATTCAGTATTTTCAGGGCCAAACATGTATACAACTGACTTTCAAATAATCTCTAATGTCAGTGTAGAA-------GAAAAGAAACCATGAAGGTATAGAATCGCTTGGACTGCACTATGTTTAGGCTAAGTTTAAGTTGGTTCaaagaggatgaaaagaaaacgaaaagaaaaaaacagaaaaAGATTCCTTTAAAAAAATAAGGTCAGACATCAAAATAATCCATACTG-GATCATGTGGAAATAGTGGGCCCAAAGAGCACATTAGATTG--------ACTTTAATGACGTGCAATATCTAAAGGAGAAACTAACAGTATTCACTAGTAGTAGAGGTGAATTTAGAAACAGAACCATGAAAGACTCATTTTTTTGAGCTTTTCTTAAAGCATATTTCACAGATCCCGAATCCCAGGTCTAGCCTCCGTTAAAAGGACAGATGACGATCAAGC----------------AAATTCCTGGCAAGGGGGTCAAAATATGTTATTAGTGCAGTAATCATTCTGAAAAATCTCTCAATAAGGAAAAAATTACAATTGTTTACACAAATGTTTCCTTAACTGTTTGACCTTTGACTAATCCCATCTTCTATAATCCC-TTTAGCTCTTTTCATATGGGAATATTCAGGGAAACTTTGCAGTACAGCggggttaccaacttttttctgtaaaggccgacgacgaggaaacacttcagatttggcaggtcacacggtcac--tagcaactatttaacttc------gTGTGCAAATCATCTAAACAGAGTAGCCTTAAGAAAGGGATATAATGGGATCTGAGTCACTGCTGATAGAAACACAGCAAAGCAGAGTTAGCCAGTGAGGCACAGAC-GATGACCCT-ACAAGGGAGGT---AGAATTCTCCCAGAAACAGAAGCCGGAAAAATCACA--------TTTTCCCCAGGGAGTATAGCCTTCAAGT-TTCTTCAAGGAGCCACACCCTTGAGAAGTGTCTTTGAATTTTATTATGAACTAAAAAGCCCTCCGCAGTCTGGGTTCTGGCTTCCTCGGTAGTGCTAAGGAAGCAAGGGTACACAGAAGATGCCTGCAGCTTCCCGTGTGAAACAAGAATCATCTTCAAGATCACCAGTTGACCTAGGGTGCTGCTCCTCAGAAATATAAATAGTTACTCTCAATGCACATTTCAGAAACagcatgatttagtattggttgtcttaactcatactcaggaaacagagagcaatggatgctggttcacagctcactttcttctttctattatgtcttgtatcccagaccat-ggaatgatactgcctccaattaggctgtcttcctagcttcattaaccaggcctag-ataatccctcacagacacatgtttccatggggcttctagttcccacagagttgacatccaagactcacgagcataGCGCAAATATCTATTATACTTGTTACAGTGTTGAAAAGAAGGTATTTAT-----CCACTTCATTTGAAGTAGTAATTATGCAAGCTGTAATGTTATAGTCTCATAAAATGATACAGTATTCTGTTCGGGTATCTAAATTCAAGGGATAAATTAAAATTGTCTCTTCACATATACCTAGTGATGCCCATTCCAACAAAGCTCTCATTAAGACAATCCCATCAC-TCAGGGAGATGCCCTCAGGTGATTAAAGCATAAAACAGTG-TGAGGAACACAGCATT-TCCCCCACTGCAGTTCCTTCTTT---------GCTCTCATTATGTTGTTTAGAAACTCATATGCCTTGTCAAATTAGCAAAAATATTAGGAAGTATTACAGTCCTGGCTCCCAACATTAGTTTTGATCATTAAGCTCATTTCTTTGCTCCTCTGGAGGCTCAAAAGACCTTTGGCAATTCTATGAAATGATCTCTTATTTTCCTCAGTAAATGTCATTTCCTTAATCTAGTAATTAATAAGAAACAAAGTCCCGTTTGCTCAGTGAGTGTCTCTTTGCGTTCTGTGCTGTGGACCTACCATTTACCATTTTATTTTTGTCCAAAAA-CGAGGTTATTATTATGGGTAACATTTAATTAGACTACTTGATCCTTGGTTAAAG---TTTGTGGGTTTCCATTACTCTACCTACAAAGATC
s HiC_scaffold_1 135344949 1794 + 233722169 ACCTTTAGTTTTTTCAGAGC-AAATAAGTATACAGCTGGCTTGCAAATATTGTCTAAC-----TGTAAAAATgttgtgaaaa---------aatatttagcaac-CTCGGGATATGCcatattcaa------ttttaaaagatttcaaaagaat---------------------------aaaaaatttcctttaaaaa--tacagtcaaaCACCAAAATAACCCATACTAAGATGATACAGAAATAGTAGAAAcacaggatatattatattacattaagtACTTGTATATTGTAAAATAAAGAGAAGAGGAATAAACAGTTGT----ATCAATAAAGCAGAGCTGAtgaatagaaaatgaagaaacacatTT----GAACACTTCTTGAAGTGTGCTTTACAGAGCAATAATCCCAGATACA----------AAAAAAGAGATGCTGATCAAATTGTgggaaatatgaatatattttattcgAAAATGTCAAGATGTAC-ATGAATATATTTACTACCCCAAAAGATCTTtcagtaa----aaaaatgaatttgtttaACCAAATGTTTTCCTAACTATTTGACCTTTAACTAATTCCACCTCTTAAAATCCCCTTTAACTATTGTCATATGGAAGCATTTAGGACGGCACTGCCCTACAGCCTGGTCACCACATTTTTTCTGTAAAGGTCAAATA---AGAAACACTTTAGGTTCCACAGTTCACACAATCTCCATAGCTACTACTGAACTCCTCCTCTGTGGCCTACACAACCATACA--------TGAAGAGATGGTGGC--CGGGATCCAAaagtttatttacaaaaacacagCAGACCGGATTTCATCTGTGGGTCATTGTTTGCTGACCCTTGAAATGGAAGCCTGATAATTCTTTCAAGAACAGAAGCTG-AAAATtcaccatcattttttttttccaggaagatTTCTCTTCAAGTGTTCTTCAAGGAGTAATGGTCATGAGAAATTTCTTTGAACTTTATtgtgacattaaaa---------------------------------------aaataaacataggc--------------------------tgtga----------------------------tggtctag-------------------------------------------tttcaaata---------------------------------------------------aatgaaag-----------------------------ttttgtCCTGAATGTTAGAATATCTGAAGCATCCAGCTTAAAATTAATCAGTACCTACAGTTTAGTGGAT--GACCTAGGATAAT-----ACAGAC-----TTTAAATGGCTCTCC-------------GTTTCCAAGCAAAA-TGACAGGTATTCTGCTGGGTATTATTAAATGTGCTAGAAAGTTGAAATGATAGTATTTGTAGTCTTGGTTTTATTTCAATCCATAATTATGCAAGTAGCAACATTATATTTCCATAAAGTGATATATTACTCCAGGTAAGTGACTGGATTTGAGGGTTAAGTTAAACTTGTTTCCTTACACAAACCTGATGCCATCTGTCCTACCAAAGGCCTCATCAAGACAACTTTATCATGTGAAGGAAATAACCTCAGGAAACTAAAGCATAAAATGATGGTGTAAAACACAGCAGTGTCCTCTATtaccatccttttttttttttttttgctatcatCATGCTATTTAGAAGTTCATGTGACTTATTGAATTAGCAAAA-TATTAGCAAGTATTACAGTTCTGGGTCCCAACATTAATTTTGATCATGCAGTCCATTTCTTCAGTTCTCTGGAGGCTTGAATAACCTTTGGCAATTCCATTAAATAATCTATTCTTTGCCTCAGCAAATGTCATTTCCCTAATGTAGTaattaataagaaacaaaaaccagtTTATTCAGTGATTa-----ttacttgctttatttttatgctaCAATACGCC-------TTTTATAAAAAAAGTAAGGTTATTTTTGTTACTAATATTTAATTAGGTTGTTTGATCCTAGGTTAAAGAACTTTGCAGATTCATATTTC-CTACCCACAAAAACC

a score=14123
s chr3           148677971 513 + 160039680 AAAACCAAGCCCAGTGCCCCTGAAATCAGCCTTTCTCTTCCCCTGTACTGGCTCTGA--CCCCCTCATGCTCA---CAGTGCCACTACCAG-TTTCTGAGGCAGGCTCAGGGAATTCTCCGCAGGCTCTGCTTCTGTCTCCTTCTCCTTCAACCAGCAACATTCCTTCAGCCACCTTTAAGACCTCCCCAGATGGCCTCTCCAAGGCTGTGGCGACCCCAGTCTCTTCGGCAGCCTGAGTGACCACCAGTCTTAAAAACACTGTAAGCTCATGGTGGTCCCTTCAGGCACACAAAGTTGCGGTCCAGTTAGATTAGAGAGGCCAACAAGAGCTTTTAAAATTCAAGCCTAATGGTGCCATTGCCCTGCTTAAAAGCC-ATGATGACTCCCCGAAGCTTTGGGGACACAGTTCAAACTCATCAGTTTAGTTAGAGACCCTGCGCCCGAGCCAGCTCACTGCCCTTAACAGCTCCCTTTGTACCCATTCAAGGAGCTTCCAGGGCCTAATAAACATCTACTG
s HiC_scaffold_1 135348705 503 + 233722169 AAAGCCAATACCACTGCCCTGGCAGTCGGCTTCTCTC---CTCTGAACCCTCTCTGGGGCTCCTTGCTGCAAAGACCAGCACATCTACCAGGTCCCTGAGGCAGATGCAGTAGACTGTTCTTGGGCTCAGCCCCT--CTTCTCTGTCTGGAATCAGTAA-ATCTCTC--GCCACCTTCCGG--TTACCCAGACGTTTGCCGCAGTCCACTGGTAGT-----TCTTCTGGCCAGGTCCAATGTCACTCATCTACAGAAACACCTCTAGCCAATGACCAGGCCTTCAGACTCCCCAATTTCCAATCCATCCATAC-ACAGCAGCCA-CAAGATCTTTCAAAATGCAAATTGGATCACGCCAATGCCCTGCTTAAAATCCCACAATGACTCCCCAGAGCTTTGGGGATACAGTTTGAGCACATCAGTTTAGTGCAAGACCCTCTGCCTGAGCCAGATCAGTGCCCTTAACAGCTCCCTTCCCACCCATTCAGGAGACTGCAAGTGCCCTATAAAAACCTGCTG

a score=52808
s chr3           148679327 1599 + 160039680 AAACCTTTCTCCTGTCTTCTTGGTCTTCCTTATAAACTTAACCCCGTGTCTATTGTTTGAAAGTTCTTTTCTTTTCCCTTCTGTCCTGACAGA--GTCAGATCTCCCAAGGTCAGAAACGTGTTCTCATCTTTGTGCCCCTGTGCCTAGGAGAGTGTTTAGCATAGCATGATTGCCTATTGAGTGGCTTTTCCATGAACCAACGAACAAATTAATTTCATAGTCCTGAAACAAACTGCATAAATTCTATTTTGAAACACTTTAGATGCCGTAGAAATAGCATTTGACAATAATACATGAGCTTAGCTCCAAATATGTGTTAATATTAGTAGTCTTAAACTAGACATAGCCCAAAATATCTCTAAGAACCACATGGTATCCTTCCCCTTTTAACTTACACTTATAATGTATTGACTCCTTAAAAATTGAAATCAATGCCCAGCTATCTCCGTCTCTAAAAGGCCGGGATGATGAGGCCGGGAGTCTCAGCAGAGGTTGCCCGCCAGCAGAAGGATGCTGTATATTTGATGTGGATAGATTCCCATCAGGGAATAAAATAAGATGCTCTCATGCTCCCTCGCTGTGCATCCATGAGGCTCTTAGGAAGGAATATTCGCATTGCAACTTTCGGAGTAAGTTAGCTCCCGTAGTGTTTTTAATTGTGCCATTTATACCTGACACCATTATCTCTATGACTGAACACTCTATTGCTGAACATAGATAGTTATTGGATATATTATTAAAACTGGGAGAGATGAATGTATGGAATAC-GAGCGCTAATATTATTTTCCTGATTTAGCACTTTGTAATTCTAAGCCTCAacatgcacacacacacacaca----cacacacacacacacacacacacacacacacacacaGTAGCTATATTTAAATCATTCACAATGAGTCATGTTTGtaatagccagtatttactaagtattgactgtg--------tgttctaggaacttgacgtacatttcagtatttagactttgtaacattactgagaaa--------aaaaaattgttatgc-------------caccacccacttttttttcagatgaataaacaggcacaaaacgataata-ccccaaggtcacatagctagcaaatgacagCCTTCCAGA----AAGCCTACTCACTCTAGTAACACAGGGCTCTGCTATTCATCTCTCTGTAGTCTTGTATCCATATATATCTTAAT-------ATAAAACAAAGATTTGCATGGCTCTACCTATAAAAGTCT---TAAAAAATACAAAACAGAAAAATTCTG---TTCTCATAAATAGAAGAAACTGCATGCATTAGGGAATTCA-GTAACACTCAGATACTCATATATTTCACAAAAGCTATGTATTTATCTCGTATCTCTCCCAGCTGATAGGGTTAAATTTTAAACTGACAACA-ATGGCAGA-----------ACA---GTGACAAGTGAAGGTAGAG-GGTT----TTGTGAATATATACCTACAAAATAGAAGCT--ATCAATAGGATTCTAGG---CGCAGATGaggcgccatgataaacactttgtgtgcagtggtccatttaaccctcaTTTATGTGCACTTGAAATGATGTCTCCTTTCTGCTGCTATT-----TAGAGCCGGGATT--------TTCCCAAGGTCGCATGGCAGTGCTCCAAACACA
s HiC_scaffold_1 135349714 1634 + 233722169 AAATCTCTCTTTTGTCatctaaaacctc--tacaaatctAGCATAATGCTTATTGTTTAAAAGTtactttgtttccctttctcaTAAATTAGATGGTCAG-CCCCTTAAGTCAAGGAAGGAAGATGAATTTTTGTATCCCAATGCCTACTGTACTGGTTAATATAGCACAAGTACCTAATAAACAGTTTTGCAATGAAT----GAGCAACTTAATTTCACAGTCCTTAAATAAATTgaata----tcattttgaattttttaatat-----aaaaatatcatttgtcaATGATTTGTAAA--TAACTTCCATCGTACATTAATATTAGTATTCTTAAACTAGACATATTCAAGCACAACTTTAAGAATCACAG---ATACTTCTACTTTTAACTTA------TAATGTATTGActccttaaaaaatgaaatcaatgcCCATCTATTTCCTTCTGCAAAAGGCCTGTATGATAAGGCAGAGAGTCTCAGCAGAGTTTGCCCGTGAGCAGAATTATGTAGTATATTTGATGTGAATAGATTCCCACCAGGGAATAAA-TAAGATACTCTCATTCTTTCTCATTGCGCATTTGCAAGACTCTCAGGAAAGAATATTTGCATTGCAACTTTCTGAGCAACTTAGCTCCTGTAGTGTTTTTAATTGTGCCATTTATACCTGACACTATTATCCCTATGACTAAATGCAATATTACTGAACATAGATAGTTATTGGATATATTATTAAAACTGGTAAAGATAAatgtaagaaatacaaaatgctaATAATATTTTCCTGATTTAGCACTTGGTATTTCTAAGCTCtaacatgcatgcacacacacacagatgcacatacacacacacacacgcacgcacgcacacacacaggcagcaTTTGTGAtataca-----------gtttgtaatagccaacaTTTACTGAGTGATCTCTGAGTGCCAAACTGCTATAAGAATTTTATGTGTATGTTATTATTTAGCCCATACAACAATACTAAGAAATAgatcataaaatattcttttccgttttttttcctttccttttctcttttcctttgtttaaagaaacagagaaaaaaggtaAGTAGGATTGAAACCATGTAGGTAGGGTATGATA---TAGCAAAATTGAAATCCAGGCACTTCAAT-TCCCAGATTTCTGC------TCTCTTTGCTATCTTGTCTTTGTACATATTACAGTataatgaataaaacaaagcttAGCATGGCTCTACCAAGAGAAGCatttatcaggaaaaaaaaatgtaaaaatgttgtCCTTCCCATAAATGCAATGAAATGTAGGC--TATAAAACACAGGTATGATTCAGGCA--CACACATTTCAAGATAG-TATTGATTTATCTTTTCACCTTGCTACTAAATGTGGCTCAATTTCATGCCTGCAGTACATGGGAGAGACCTTGGTATACACAGGTGCCAAATAAAGATTTAACAGTTACAATTACAAAGGCATATCAACAAAAATGGAGTTTGAccaacaaagttttaaaaatcacacatgaAGACctat----agtattttgttttcagtatttcatttaatcctcagtgAAATGAGGTTGAAGATACAGATCcttttcacatatattttctgTAGTTTAGGGAGTTAAATAACTCCCCCAGGTTGCACAGTTGGGATTTAAGCATA

a score=74378
s chr3           148682131 2674 + 160039680 AAATCTTAAAACTAACAATT-GACCACCCTAAAATAACCTGCAACCATATTGGGCAGCTGATTAGCATTTTTCTGGCTAAATTGTGGACCCATTTGCAGGTGGTTAGGGTACCTTTTACTAAGCTCAGAGTTCAAATCCTACAGTGTTTTTTTTTTTTTTTTTTCAG-CCTTGGAG---CACCAAGAGAATTGAAAGAACTGACCGCATTTCAAAAATGAAGTCCGACCCTAACTATTCAGGTTAGTGTCATTACTTGTTTCTGCTCAGATTGACTTCCAATCATTCCACATTAAGAAAAGCATGTTTTCTGGCTTGTAAAATCTGGCCAAAAAACTACTCAACAATTTCTGTCAT----TTTTCTAAAAATCAAGAATACAAAAAGTTTA-ATTTCTTTTAGGGAATGTTACTAAGCAGCAGAGATACCGCTGAGTGTACTGTTCAGCTCAGCTGCCGCTCTCTGAACTGGACAGCCGCTCATTAGTTCTTCTCTTTGTTATGGAATACTGCGGTCACTAGCTATTTGGCCAGATTTTACAAGCCAGAAAACATGTTTTTCTTAATGTGGAATGATTGGAAGTTAATCTGGGCAGAAACAAGTAATGACGCTAACCTGAATAATTAGGGTCAGCCTTCATTATTGGAATGTGGGCAGCTCTCTCAGAACTCTGTCATAGAATGGCCAATATCATCACTCTGTTTTGTTCTTGGTTTCTGTGTCGATCTAATTAAACATCACACAACAAGACATGGGTTAATGGTATGTTGACCCCATTTATAATTATTTTCCTTTAGTTTGatatatatatatatgtgtgtatatatatatatatgtatatgtgtatatatatatgtatatctgtatatatatatatCCAGCAACAACATGTATAGTATCTTCTAAATTTCTCTTAAAAA---CAGAACTTTTACATTTCATTTGCAATCAAAGACAA-ACTCAAAAGAAGCAACCATAGAGTTGTATCAAACACAGCATTCTTGCTGATATGACAAAAAAATTACAGGGAGTTAATT---------------------GATCTAAGTCAATGACACTATAGGGGGCAA--ATACATTATTAGTCAAAGTGTCCCTTTATATATCCTTGCTAGGGTCCTGTACAGATTAATATTGATACAAATTAATTTCCTAATTCTGAAAAGTACTAATTGAAGCAACTTGGCCTGGTTTCCAGAACTAAATGTATGCCCTTGAACCATGCCTTGGATCCATTTCCAATATCCATCCCAAACACTGGAAATCCTAGTTTATCCTGGCTCTGATTCAACCTTCCAACATTTCCTTTCTGTTTACTTTGGTCTTTTGGAAGAGGTCCAAATTTGTCTCAGTCTTTGAAAGCAGATGAATGAAACCGAAATTGCATTTACTGTTCTTTTGGCTCTTGTATTTGTGCTCAAAGACAGATCTAATTCCTCTGGTAATTTTCATAAAGAAAAATTACTAAATTAATTTATTTTAGCACTCACCAAAACAGAGATTATGTATACTTAATATAACATGACTCCCattttttattaaaaattaaaatCCATACTAAAGGGTAGAT----TATTATTTTCCAGGTATG--TCTATAAAAGGCTTTATATAATGCTAAGCATTTTTGAATAACT--GAACTTAGACTCTTTTAGAGCTGATGTAATTGAAGTGTCGAACAGTTAAGGACTCCTGCAAAAATCCC----------ACAGAGAACCTAGGACTGGTGC-CAAGCATAGCTTGTCTTCTGCTCTCGTCTGACTTCTG------GGATCGCATGTAGTGCTCAGGCTATTCAGCTTCTGACTTGATCTTC--AGTGTTCACTGAATTGTTGAAAGATCAACTCTCACTCTC----------TTACTGAGCATTGAGGTTATCTTGATGTTGCTCAAAAAATAGAAACAGGAAAAAAATAAGCATCAAAGATAACTATG---CATCAATATGGAG-AAAGAGTGAAGGATATGCTTTGAGAAGACAGG--GCTGGTAGTTG-TTAGGAG---TGTAACGCTGTAGGTGGTACCAGCTCCAGAGACTGACAGATGGAACACTCACCAAAGCTAAGCTACATTTTTCAGTACATAATTCTTACCTCCTCAAAGGTTTTCATGCAC--ACAGGCAAAAGAACCCTCAGCTGAAGAGGACCTATGAATCTTTAGTAGTCTATCTAGCCAAATGCTTCAATTCAAACAGCCGCTATGTCAAACGTTGTCTTATAAAGATATAAAAT---------AGCCTGAGAGGTGCTG-------AACACAAAGCAAAATTACCTTATAATGATTTGCTTAGGCCCCACATTCTTCCTGATGATTTGTTTATAAAGGCATCCAAGCATCAACAGACGACAGAGCTGTAAATATGTACCTGGCTAATGTGAGAGATACGTTTCAGGAAACTCATGAATGAGTCA--TTTCATAAGCCATAATCTTATTTTCAAATGCAAGGCAAGCTTTCTATTTAAGGGAACTCTGCAGTTCCTCTAACAAAGGATAGTTCAAAACAGTCATTGCAATCTGTTAacagacagacagttaaggacagacagacagacagacGCTGCCTAGATCTACAGGTTAGGTCTCACAGAAACCCAGTACTGTGGTAGACTGAGTTCCATAAGTCAGGAATTCACAATTACATGGGGACATTTGTGCCAGCTCTGGGTCTGACCAGATTTTATAATCACTTATACAACATTATATATAAAATAACAAGACC
s HiC_scaffold_1 135352375 2466 + 233722169 AAAGATCAAAAATGGCAATTCTAATATCCTAACATGATTTTCATCCATTTTGGTCATTTAACCAGAATCTAATTAGATGAACAATagattgatttgaaaatattt----cttcttttcaggaGCTCAGAATTCAAATC--ACGGTCTGCTATTTGCTGATGTTATAGTCCCTGCAAAGTCCCCCAAGGATGTAAAAGTAGTAAAA-----TCAGAGATGATTTCT-----TTGCTGTTTAGGAT----------CTTGCTT--------GTTGAC--------AATTTGCACTA----------TTTTTCTA------AGAATC------AAGAattgctca-----ctttggcagcacatatattgaaaatcaagaattaaaatatgttataatTCCCTTAAATTGCATTGTGTAGCAATACAGAC----TTAAGCTCAGTGTTCTGCTGAGCTGCAGTTCTCTGAGC----------------AACTCATCTACTCCTCATATGATACGGGGGCCATTAGTCAAATAACCACagtgtacaaaaaagaaaatatcttgttCCAAACATGAAATGACCTGAAGTAAATCTGACCAGAAACAAGCAATGAAACTAGCCAGA-------------------------------------------------CCCTGCCAAGGCACAGCCAATATCACCA----AGTTTTCCCTCTATTTCT------------CTAAATACCAGACATCAAGACTTAGTTTAATGG------GATTCCCTAGATcattatttcctttcattttgctaTA--------------------------------------------------------------------------------ACTTTCAtggtattttctaaaattctattaAGAAGTACAGT-CGTTTCTATTTCACTTATGGTCAAAGACAACACTTAA---------CCGTAAAGTTGTTTTATA-ACAAGCTTTATATTAACATAGTAATCAAAT-ACATGGAgttaatttgatattttttcaatttaattgaccAAAGATAGTGATACTATAGGGAAAAATAATACATCATTAGTCAAAGGGCCTTTTCATGTGTCCTTGGTAGTCTCTCATACAGATCAATATTGATACAAATTAATTTTCTAATTCTGAAAATTATTGATTGAAGAAACTTGACCTCATTTCTAGATCTAAATGTATCTCTTTAAAACA-ACTTTTGATCTATTTGCAATATCCGAACTAAGCATTAGAAATTCTAGTGTGTTCTGGCTCTGATTCAATCTTCCaacatttcctctctgtttattttggtcttttggaaGAGGTCCAAGTTTGTCTCAGTTTTTGAAAGGAgatgaatgaaattgaaattgcATTTACTGTTCTCTTGACTCTTGTGTTTGTGTTCAAAGACAGATCTAATTTCTTTGGCAATTTTCATAAAGAGAAATTaccaaattaatttattttagcaCTCACTAAAATAGGGCTTATGCATAGCtaatataaatttattacatgcttttattaaaaaatacaatcttTATTAAAGAATAGACTAGGTATATTTTCCCAGGTATAactatatataaagttttaaGCAACCCCAAACAGTTTACTGTAGCTTAAAACACAGACTATTTTAGACTCAAAGGAGTTGAGGTCCAGAACAGTTAGAGAATCCTTCAAGGCCACCTGGTTAATTAACAACTAACCTAGGTCTGGAAAGGAAGCCTAATACCACTTCTGATCTCTCCTCACTCCTGTAGCTCAGCTCCCA---AGAGTCTGGATTACTCAACTGCTGATTTGATCTTCAAAGTTTTTTATGGAATATTGAAAAGTCAACTGTCCCACTCATTCTTTCCATTACTGTGCACTGATGTTATCTTGAGCTTTCTCAAAAG--AGAAATAGG-AACAAATAAACATC-AAGATTATTATGTGTCATAAATATGGAGAAAAGTATGAACCGTACATCTTGAGAAAATATGTAGCAAAGAGATGATTAGGCGATATGCACTCTAGAAGTAGATGTCAGACCCAAAGATTGATAGAGAGAAAATTCACCCA--CTA--TTACA-TTTTCAATACATAACACTCAGCTCTACAAAGGGTTTTGTGCACATACAAGCAAAAGACCTCTCAGTTTAAGGGGATCTATGAATTTTTAGTAG----TCCAGGCAAATATTTCAATTCAAAAATACAACATGTCAAGTACTGTCCTACAAAGATGTAAAATACTTTAAACAGCTTGAAAGAAGATATTCACACAAGACAAAATAAAGTTA--TTATAATGATTTGCTTATGCCCCATGTTCATTCCGATTATTGGTTTATAGAGGCAACCAAGCATCCACAATacactgagaaataaatatgTGCA-GCCTAATACATTAGCTGTGTTTCAGAAGACTCATGAATGAATCAATTTCTGTACactataatcttatttttaaatggattgCAAGGTTTCTATTTAAGGGAACTCAGCACTAAATCTTACAAAgtataatgcaaaataataatcCTATTTTGTCCACAGAT---Ctgtcaaag--agatacacagacaGAGTCT-----------CAGGT---ATTTAACA--------------TGATGGGGTAAGTACCCTAAG---gaatctctttcttatttgggtG-ATGTATGTCAGTTCTCAGCCTAGCCACATTTTATAGTCAATTG---GAGAgtttataaaaagtaataagacc

a score=40791
s chr3           148688047 1617 + 160039680 GTATTACTCTCTTCATAAGTCTTTT----TTTTTTCCTGCAGTGCCAGACATTTTTAATAACAACAATAAATAAATGCCTGCTGAGTTAGATATTGCTATGATTTGATCTTGTTAATAGTAATGAGTAAATTGGTGGGTTTGATGCTTTCAGATTT-AAAAAGAAGCCATCTTCTGATGGAGCCTTGCAGCATCTGCAGTACATTCTCAATGGGTAAGATGTTTGTAAACTCACACCTCAAATCAAATAGCAAAGTGATCTTATATcacacacacacactcacacacacatacacacacacacacacacacacacacacacacacacacaccacaAAGCTCTAGGCTGTGCTATCCCAATACAAAACTCTGTAATAAGTGC---AGAATACCTACAAATACAGTCTAGCG-ctctctctctctttctctcccccctctctc-tcattctctctgtctctcttcttccttcctttcctccctccgacccacatccctccacttcctctttgctggtttcctctctttctctctctctctccctccctccctccctccctccctcacttcctGTTGCTTTtctgcctctgcctctgtctctgtctctCTTGTCCCcttctactccctcctcagttctcctcccctttctcttcttcctttgtgtctccttttcccttgctatctcctacaccttctcttGATTGCCCCATCTCTCCATGTGCATCACTATAACGTATATATTTACATTGCTCTTACAACACATAAACGTTCCTTGAGAGACCTTATTATCGACTTCGCCGGTTTCCCCCAATTTTCTAAATGCCTCAGAGAGCAAAGTGTAATGACAGTTAAGCAATTTCTTGTCATTGTGCCTTCTACTTTTTCATCAATAACA-TTTTGCTAAAACAATCCCATAATAGAAATAGATCTAGTTCATGTCACCCGAGCTGATTGGGGTGGAATCTCAAGTCCGGGAAAACAAAACAGAGATTACTGGCTTGACAGC--------CTAGAAGAATCAAAAGTTACACAGGATTGGAAAGAGTTGCCTGCACATTGATTCCTGGAGTAAATCACTCTCGCAGCCCTTTTACATGCTGACAGGCTAATGGAAAGAAATGGGCTTCTTTCTTTATTTGAGCGATATTCAATTTAATCACATATCAGTGTAAAGCCAGTGAGGAATGAAAACCAAAGCCATAGTCCA-----ACTTAAAGGAAGGAGCTACACTTTGGAGAAGGGGGTCCTTCCCTATTCAGGGAAATGGATTACATTAT-ACAACTGATGAAAGA------TCCCATGTATCTCATTTTTCTTGTGTTTTATAATGGGATCAGTCGATAAATATGCTTACCTTGACA---CTGGCAGAAACTGGGATACTCACAGCTGCCA-------------TTTGTGCTGGATCAT--------------AATAATAATCACCATGATAATTAGAGTGTTATGTTGTTGTATAGA---------TGCAACTAAAAAGGCCATACTG--------GTATGAATCACAGAATACACAATTTTTactcgttatttgaccttgagaaaaatagacttgactttc-caagtcttcatttagttatcaataagatgagaaaggtggTGAAATTCTCCTTACTGATTGTAGTATGATTTAAATATGCAGTTCTTGAAATATAGCT
s HiC_scaffold_1 135356448 1390 + 233722169 GCATTACTCTCTCCacaggtcttttatttttttcttctgcagtgCGAGACATTTTTAATAGCAACCATAAATAAAGGCCTGCTGAGTTAGATATTGCTATGATTTGATCTTGTTAATAGTAATGAGTAAATTGGCGGGGCTGatgtcttcaaatttaaaaaagaagccaT-------------CTTGTAACATCTGTGGTATCCCTGCTATGAGTTAGATATT--TAAATTCACACATCAAATAAAATAGTTGTATGATATTATATTGCTGA-AGAAGTCCATTTGCAAATACA-------------------------------------AGCAGAGTTTTATGCTGTGGAACCCTA--GCAGAAATTTGTAATAACAGCAATAGTAATTCTATCAATGAAGTCCAGCTCCTAGCTATCTATTCCTCCTTCCCATATCTAgtcactctctctgtct-------------------------------------------------------------gtcactttctgtctctctcatcctccttctccctctccatc--------------------------------------------------------------------------------------------------tatgccttttctttgtttactacctct-----------------------cttctttgtatgtatctcta-aatatatatatttaca-------aatgacAATCAAACTTTACTTGAGAGACTTTATCACTGACTTTTTCATGTTTTCCCACTTTTCTAAATGCCATATAGAACAAAATCCAATGGCAGTCGAGCAATTTCTTGTCATTATGTCTTCTACATTTTTATCAATAACATTTTTgttaaaacaaacacacaataGA-----ATCTAGTTCATGTCACCAAAGCTCATTGGGAAGGAATTTCAAGGCcaggaaaacaaagcagagaTTATCAGCTTGACAGTTAGAGAGactagaaaaatcaaaagttGCAC---------------------TAAATTGATTCCTGAACTAAATCAATCCCCTAGCCTTTTTATACGTTGACAAGTTAATGGAAAGAAATaggcttatttatttctttgactgATATTCAATCTAATAACATTTCAATg-------agcaaataaagaaaactaagatGAAAATTGAGTGTTACTTAAA-GAAGtagttaaattttgaaacaattgGCTTTTTCCTCTTCAGAAGGACGG-TTATATACTCACAATGGATGAAGGATTGTTTTTGCATGTACCTCATTTGTCTGGCATTTCACAATATATTGAATcaataaa-atgtttatcttgGAGTGCTTATCAGAAACTTGAA-GTCCATAGGTGCCACTTtggtaattcttttatttttgtttatgttttttgcaTTCAGACAAAAGGTACTTTTATGA---------GATGCAGTTGTACAAAACAATTTCCTATAATACAAAAATCGAGACTGTGAACAGCAGATGAATTCCAGAATGTGCAATTTTTA---GATCTCTGACCTTG--------ATATTTGACCTCAGTGagtcttaattttctcatcaaCTGAAGGGGAATAACAGTAA----TGCCTGacaaattattgaaaaatttaaatatgtctttCATGGGAAGCAGCT

a score=22692
s chr3           148690432 1105 + 160039680 CTCCTCTGTCCTGTATGATCTAGACCACAGATATTAAAAGCCTATTAGAGATTGCTGTTTTTAACTTCTTAA-----TGAAAGTCTAAATCTGTATAAGAATAGAAAATGTGTTCACTATT-----CTCTAGTGATTGGCATATCTA--ATTTAAACACAAAAT-------TCAGGAGTGAGTTTTTGACATCATCTTATCAATAAGCATTGATATTGGAGTTGACATCCACAAATAGCTCCCCAAA----TGTGCCAGATGGGTTTAGCAAAAGAAGTGTAGGGGAGAAAGGCTCTGACAGTACAAACATCTAAAGAGAGAAGACATT-----TCACAGCTCTTTCCTAACTTTCTCTAAATTCCATTACG----------------------TCGATAATCTGATATACACCACTCT-------GAGTTCCCTTCTAAGAACCATACCC-CAGTCCTGGATGCCCAAACAATCAAAGAAAATATCAGATCCCCCCCCAAAAAAAAAACA----AATATAAATTTGATTGTGA-CCACTCTAAAGTGGTGGCTGTTTTCAAATCTTGTCTTTAAC---------TATTTCAAAT------GCCCCCTACTGA-AAGATGCAAGTGTACAAA-----ATATTCCGTGGCAAAATACACTGCTGTTAGCCCACGTGT--TCAAACTCAA-GGCTACTCCAGTCTCCAAAACTTAGAAAACAGGGACAAAGACAATGACTTAAAATGCATCCCTATCTGCATTAATCACAAGCTAGAGTAAGTTTCTC---TTTTAGGAGGTAAATATATATATATATAGCAAAGCCCATTTAGCTCTATAAAATTAAA-GCATAAAGAACTTTGGAAAAATTAAGCTTCAAGCACTCTGAAGTATTATAATATAAGCCGGGTAAAGC---ATGCCTGCTAAGAAAGCA-AACCTTTTATTGTGAACGACTCT----AGACTTATAAACCGTGGACATTTAAGTGACACTATGACAATATTAGAGTCTTTCTACTTGAGCGTGCAAATCAGTAAATTATGTTTACAGTGGATGGTAACATGAGGATAATTAGAGTCTATGCTTGCAACCCACGTCGGCAGGCTTGATCAACACACTGGCATTTTATTTAAAATATTTGATGTACATATACAA--ATTAAAAGTGTTCT---CTATGTATTTTTATATCTATGATTTCTATT
s HiC_scaffold_1 135359465 1145 + 233722169 CTACTGTGTCATGTGTA--TTACaccagaaatatgaaaaatacattagGGATTTCTGTATA-AAAtgcttaaaaacacaaaaatctaaaacttaCATGGATTTCAAAATATACTTACTATTTCCACCACTAGTAATTAGCATATCTGTTACTTGAAcccaaagtcttgagtttagTACTAAGCTATTAA--TCATTGTATTAA-AAGCATCCACATGAGGGTAGGTACATATAA-------CCCAAAGAAATACTTGAAGTGGATgcagcaaaaggaaa--agaggaagatgtctct--ctttttaaat---taatgag-gAGAACACTGTAACCTAAACTTCTTTCCAgactttctccatttttctatACAACTAAACATAAGCCCATTCCTCTCAGCTCTCAAAGACTCACATCTCTTCAATCAAAATTTTCTGCCAAGAACCATGCAGGCAGTCCTGGATGACCTCGCAATCAATGAAAATGTGACACC---------AAAATGAACATTTGAGTATAAA---AATTGTGAATCGttacaaaat---------tttcaaatataatttttaacataaatgcATTCCTCAAATTTGTAAGTCCTCCACTACTGAGATGCAACTCTATAAATTAAGATATCAAATACTAAAATACACTGTTA-------AAGTATAATTGAGTTCAAAGGCTACTCTACACTCTACAGCCTGTGAAACTAAAATGGATGCAATGACTTAATATAAA-CAGTTTACCCATTattagcaagaaaaaataaaaacataaaattttagcaGGTCAAAAAATA-------------GTGTATTTAGCTCTATTAAATTAAAAGCATAAAGAGGTCTGAAAGAATTGAGTTTTAGGCACTTTGATGCATTAAAATATAAGCAGGGAAAAGTGGGATGCCTGCTAGAGAAgtacagctttttattttgaaaaatttttttcagatgtaCGAACCATGGACATTTAAGTGACACTTAGATGACACCTGAATCTTTTTAGTTGAGCATGCAAATCAGTAAATTGTGTATGTAATGGACAATTAGGTGAGCACAATTAGAGCCTGTACTTGCAATTCAGACTTGTGTGGCTTGTCATTATACTTCCATTTCACTGTAAATGGTTTACACACACATATAGGTATTGTAAATGTTTCATGCAATATACTTTTAC-CATATCGTTTCTATT

a score=10319
s chr3           148693319 1932 + 160039680 TATATTCTAGCTGGAGACATTTAACTTATGAAACATTGGTTAATACACCCAAGTTTCCTTAACTAGTGGATCTAATATGTAGACACAAGAAACATGACACTGGGAAAAAGACAGATTAGAAAGGGGACATCCTAGGAGTTTCTAATGGCAGATTCTAGTTGTTTCCTAGAGCACTGTGCCAgtcagctttctgatactgtgacaaaatgcccaagttgaacagcttatgggaaatgaaaaatattgtgatgttagctgtcacacttttGCTAGTACCCAAAATATATATCAGCCGGCTGCTTCTCCTGAGTAGAAGCCACTGAAGAGAAAAGCAAG---ATGGAGTGGTTTGGAACTAGCAAGGTAAAAAGTGAGCATCATGTGAAGTCTGTAAACCCCTGAGTCAGTGTTCCCAAAATAGGTGATTCAGGTACCAATGGGCTGCTTTCTGTTGAGCTCCC--------------CCCTTTACCCCTGTATTGCTTTTCATCTAATTAGCCTGTGATGAtgagaatgtagcttaatggcagaacactcccctaggttcaggatcaatctccaacatggccaaataaatagctgatggttctaaggctcattatgcatgcctagaatcccaaactcaagatgtggaagcagaaggatcaagagtttcagcctagcctcagctatatagtgattctcaggccagtctaggctacaagcagcctcatataaaaaaaaataaCATTTAAAATATTCAAAATAAACAGGTAATATTATGTGTTGGCATCATTGCAACACCAGCGATGAGTGGGTGACTAAAATAATAATAGTAAGCATGTGAAAAAATATGCaaaatattatttataataaatGGG---TTTTTATAGCATAAAAGACATA---CATTTTGTTCTCCTTCCTATG----------CAAATAGAATACCATCAACTACTAACTACTTTTCTTCCTAGATCATTTTTTTTTAATTCTACATGTTGGTACCAGACAAGGAAGTGAGTAAGTTACATGTAATTATGGACAGAAGG-TAGATATAAAAAT-----TTCAAAATTCTATTTAGAGATGTCTTTTC-TTTCAAAGCCAAAGCCCATCGCATTGAGTGATATGCTTCAGGAAATCCA----GAGGGGGGAAAAAGTAGATAGCAGCCATTCCTGATTTCTGTTGTAAAGACTTGGCAGCAGTTAAAAGAGTTGGA----------------TGCCAGGCGATGCTGTGTCCTGCATGGGCTCTACTGCC--TTCTTCACATCCGTCATCAAGATGCTGGTGGGCAATGAGCTAGAGCCAGTACAA-----------------GCAAGAACAAATTCTGGTCTTGCA-CGAGTTAGCTTTCTTTGGTTGTAAATATTGAGATTCTGATTAGCCTAC-AACAAA--CAATTCACAAGACCTATCTTGCAGAATTCAAAAAGG--AAATGAAGCAGTGTCCTCACCTCAGAGAGAGCTTAGCATCGGATGAGGGACTGCTAGACAGCATTGGGTACCATGGCCACAGAATTGCTTGGCCCATCTTTTCAAGATACCTAACAGGATAGTAGGACCTCAAATGCCTCCTTCATGGTTGCAAAACTTGGCTCTATATAAGGGTTCTCCAAAGAGAGAAATAATCCCCTGCCCCCAGAAAACCA--------TCTGTTCTTTAATGAAGGAAGTCCAGCAGCCTTGTTTTATGGCCCACCAAGACTCCTCAGAGAATA-GAGAAGTCAGTGCTCAGA--AAAGTCAGGACTCTCTTAAAGGGGCC--------TCTGGGAAGTTGAGAAACCAAAGAATGAGCTGGTATAATAGGAGCCACTGTGGGGTTGCAATTTTGCTCTTTAAGGCTATGTTAAAGGACTTAAGCCTATTTTCCTGAGTAAGGAGAGAGGGATGGAATTTATCTATTATGG-TTTTCAAGTGTCTGTGGAATTACTAAGGTCGACTAGTTCCTCTCCACAGTGGAACAGAAACAGACCCCTGGTTTGGTTTAA
s HiC_scaffold_1 135362275 1545 + 233722169 TGTTTTATAGAAGAAGAACTGTAAGTTTTGAGACATTGATTAATTTGTCCAAGGTTACACCATCAATGGATCTAGTATTCACATACAAGAAATATGAT--------------------------------------------------------------------------------TCAGGCACCT------------------------------------------------------------------------AAACTTTTACTCCTACCCTAAACATGTG-CAG--AGATATTTC------ATGTAAACCA--GAAGTGGTAATGAAGTCAACTCAgacatttgaaaataacaaggtcAGGAgtaaagacaacagaaaaaatat--tctCCAGAGTATGT-TTCCAAAAACAGGTAACtcagggatgcacaagtagctttctg-tgagtgtctttttgttttgtttattttctgcttcagtgtttcttttcatttaaatagtCCATAGT-----------------------------TTCTTTTGGTGTAGTACCAGC-------------------AAGGCTGTTGAGTTTA---------------------------------------------CAAAGGAAT--AGAACTTTAGCTTA----------------------------------------------------------------------taaaaaatttac--------------------------------------------------------------------------------------------caaaatgttataattaataaatgaaaccatcataccacacaaaaaaaataaatcagcttattttcttttctatgaagAGACATTCAAATAGAATAAACCCAACTAA-AATGGCTTTcct--ctgggt--ttttttctgtaaGCTATCTCTGACAACCAG---TGGAAAGAActcaattatttttaatcatgGACAGAAGGACAGACATAAAAATTGCACTTCAAAATTCTATTTGGAGTTGCATTTTTGTGTCAAAACCAAAGCCTGTCACATCCACTAAAAAGCTTTTGGAAATTCACAATAAAAGTGGAAAGAGTATGTAG-AGAATTTTCAGACTTACATTAT--ATATTTGACAGCAGTTGAAAAGTTTGAACCTTTTTCACATCATCTGCAGGGAAATGTTG----------GAATCCTTTTGCCCATAGTTCAC-----TCTACGAGGCACTGGAGGGCTTGGAG---AAGCAGGCACAGCACTGAGTCCTGCAGTTCCACGCACACATTCTGCCCTTGCATTTAGTAAGCTCTC-TTAATTGTAAGCATCAAAA-CCTAATTCAAATACAAACAAAGGGAATTCATTAGAGCAGTCTTACAgagtttaaaatggaaaaaagaggcTGGGAGTCAGGATTACAGCCAGCTCAGCCACAAAGCAGGGC---CCAGGTCAC-TCGGACATGGACGCTAAAAGACCATGTTGACCACGTCTTCCAGAT--CAAATGAACTag-----------actttctttttattcttacagCATTTGACTCTAGATCAGAGTTGTCAAa----aacagtcatttttttttcttaaaaaacaaaaaccctgactGTTATTTGGCTAAAGGAGTTCAAAAAGTTTATTTACATCCCCAACACAAGTGAACAGAATGCAGGAGAGATCATTTTTCAGAACAAAATCAATG-TATTGTGCAGAAGCCGGAAAGGATGCTGGAAGTCAAAAAGCCAAAGGGCAGGCTAACGTTACAGGAGTTGTTCCAGAATTGCAATTTTATTATTCTTGgacacattaaaatatttgagtttattttctcTGGAGAAGAGAAATCCATGGAATCTATCCATGACAGTTTTTTAAGTATCCTTAGA-------------ACTGGTTCTTTTCAGTATTGGGGAAGAAGCCGA--ACTGGGTTGGCTGAA

a score=123148
s chr3           148698338 3008 + 160039680 TTCATAAGCATGAGTACAAATACCAGAAGTGGCTATTTAAAGCTAGTATTATTGACTGCTAACCATAAAGTGGCTAATTGCATTGGCCCTGAGTATTTTTGGATGCAATAGGGCTTGTTGTTCATTTGTGAATTAACATGAATGAAATTG----CTAAGGAACAGAAAATGTAGACCCAAACCAG------------TGGACGCTAACTCAGTTTTGGGAAACACGAAAGCAATGCATACC--CTAGGGAAAGCACAGCTTCAGAGCTGCCACCCCACCCCACACTT-CCTTCCTTCCTAATATCTGAGTTCCTCGATGCTATGGTCCTTGTGCT-ATGATTTATT---TTTCTCTTTGCCTATTGAGGCTAGTCTCAAGTATTAGATACTCACACAAT-GATCCAGCTGTTCAAGAAACTAGAAAG-TTGTCCACCTCAATAAATTTCCAAGTTTTTTGTATTGGAAAATACTT-CTGTTGCTATTTTACACACCACTTTATT--TATTTAAGACCCAAAATATATTTCATTAAAAATTGAATCTTATCAAGACAGTTAAAAGTGAACAATTTTTGAGTT--TAATTCAATTACATTTTCTTGAATGTCCTGTTCATGAAAGCACTTTTgaagaggaggaggaggagaaagaaggaggaggaggaggaggaggaggaggaggaagaagaagaagaagaggaggaggaggaggaggaggaggaggaggaggaggagTGAGACTTAAGGAA------TTGTTAAACTG-TGGGGCACAACTTCCCAGAAGTGGTACTGCCCTGTCGGTTCAGCTGTCTTCCCTCTGTGGGCACACCTCCACTTTGCAGGGGAGATATACATATTGGCATGTGTTAAAATAGTCTGAATCAAATTATCATCTAGTTGAGATAGGGCTGTAGCTAGGGGATGTCTCGATGACTCAGAATTCCTCAGAGAGGAGCTGCAATGTCAAACTTGTGATATGGTGTCAAGATGAAATATGCTTTGAGTTTTATTAATAGTCTGGAGCACATTCCGCCATTCCTTCAAGGGCCCTGCCAGAACGAGATGAGGGTTGCCAGCATCCATGGATGGGGATC-ACACTCT-TTAACACTCTTGCCACCAAGTGCCTATAAAATGTTTGTACCTATAAT--TGTCAAATTA-TGTTAATTGACTACTGAAAAGACACTAGGAAGTTGAAGTGTTCAAAAAGTATATTTCTCAGAATCTCTTGGGTGCTCTTCAAGCTAAGCACCCAGGGGACATTTTTTTTTCCTCTACACTCTATACAATGAAAGCAGAATGCCTTAAAGTATCATCTTGGTCTTCATGTAATTTTGAAAATCTAGTAGCAGGAAAGGGACGTTCCTTAAATTCCTGATGAAATATACACAAGGGTAGTAAGGATTTGACTTTCCAGTAAGTTTTGTTTTCTTAGCTCAGTCGCACTAATATCTGTTAGGAATATTT-ATTTGATGTGAAGTTTGTGCACAC-TG-----------------------------TAAAGATATTTCCAACACAGCTCAGGG-CTTCGGCAACCTCAGCCAGGGGGAGATGTTAACAATAAATCAGGCACAATTGTGACTCAAGAAGAAAATGAAATAAAATATTGGTTCCTAGGAGAGATTTATTTTTCCCTACCTCCTTCTTTCAGGTCAAAATAAATAGAGATTTTTCTGAATGTCATTACAACTTCAATGACTTCTCGATTTTTATGTGAGAATATTCTACTTTGGGGACTATAGATAACAATCCTTGAGTTGCAGAATTCTGACCATATTCTATTAAAATCATTTTTCCACTTTCCTGTTAAACTGTATTTAATCCTTTGTGTCAATGTGCTGGGGAAGATAGTAAAGATATATCTGAACTTTGCCTTAAACTTCTTTAATC-TTTTTTAAGCCCTCATTCATGTAACACGGCTTCAGCAATCTGATTTCAACACCTCATCTCCCAGGGGAAAAAATGCTAAGATTTCCAGGTTCAGAGACCAGTGGGAAACTGGTTCTCCACCACTCAAAAGCGCTTCATTCCAACCACAGCTTCTCCACAGTGCCTCCTCCAGGCCTTTCAAGCCTTTTGAATTCCATTGGGTAGCAAAGAGGCCTTTTGTAGTGTCTAGAGAGCCCTAAAGCTGAGGGGACTGGTAATGACATCAGGCACAGGTGGGCTCAGAGGATTTTTATCTGGTGTAGGGGGAAAAA---ATCAAACCTTTCACAAGGACAGCATATACCACCAAGAACACACTTGCCCAAAACCTTTGTTCTTCCTGTTGGCCATAGGCACAGTTTGATAACCATTTTAAATTCTGCTTCTTTGTCAGGGTTGTTAATGAGGTGGGATTCAGCTCTGTAAGAGACTGA-TGGT---GCATGTTGTGCCCTGTTCCTTAACTT--CCACTGGATATGTGGAAAGATAAATCCCAACAGAAATGTGTGTGTGCAGGCCTGTGATTCTGCTCTTGAGCTGTGACTCTTTCCAGTTCCAAGTGTCCTCTCCAAGGTGAAATAGTCCTGAGCTGCTCTGCCTACAACAAATGAACCCCACTGTTTCCCACCATTCCTTACTGTTTCCACTGAATGTCCCTTATCACAGCTAAAATCAAAGTTTGTTTTATCTTCTGCCCCTTTGGTATACTTTGACTATTTTTTTAAAT--AGGAAATCGTTTGTTCCAACGGTGATGATAATCCCAGGCCCACAGATATCTGCTGGTAAATGGAGGGCAAGTCAGAGCTCTCTAGCCCTGAATTGACAATGAAATCATCCAGCCCTGACTGGTGATGACTGCTGTCTACCAGTTATCCAAAGGCTTTGTGACCCAGGCTGACATGGACAGTCAATGCTATGACAAC-AAACCAAGTCCCACTGAACCACACGCTTGATAAAGAGGTCTTCGTGTCTATAGGCAGCTTCAGCAACGAGTTTCTTTGTACCAGAGAGAGCTAGACAGAGACTGATGAACCATACCCAGT-----TCACGTGACAAAACAGCTCAGTGTGATCTTAAAAAAAATATTATTCCCAACCCCAGAACAAACATAAACAGTGCCATTGCTCT
s HiC_scaffold_1 135367707 2881 + 233722169 tttataaaaatgaGTACAAACATCAAAAA---CTAT---------------------------CACGAAATA-CTAATTATGTTGACCCAGCGCACTGTT---TTCAATA----------------------TTAAGGTAAATCAGATTAGTTTTTACTGGACATAAATTTTAGTCCtagataaaatggaaagaaaacaaattttatctcagttttgggaaacctgaaaaaaatgattaataatGAAGGAAAGTATAACCAAAGAACTATCACATCAtactctttttatctcttttcctaATATTTCATTCTCTTG-TCCCGAGGttcttatatttattatttgttgttttcctCCTTGATCATT-----------------TCACATACCCCCAAAAAAGGTCTAACTCTTCAGAAAACATGTGAGCTTGTTGGTATCAATAAAGTCTCCATAATGTGAAATTGGAAAATGGGTACTGCTGCG----TAAACAACCCCCCAGtaacactgaaattttaaaaagcaattcatTAAAAATGGAGCCCTACGAAGACAgtgtaaagtgattttttttgttgttgttcattcaATTTCGTATTCTTGAAGGTCCTCTTGATAAAAC----------------GTGGTGGGGAAA--------------------------------------------------------------------AGAAGAATTGGTAAAAGTAAGTCatatgaaaggattttttttaaaccactgaGGTACCACTTCACAAAAATGATGTTGACCTGCCAGTCCCACCTCTGCTTCTCTGCGGGCCCTCCTCCATTTTAAAGGGGAGATATACATATTGGCATGTATTAAAATAGTCTGAATCAAATTATCATCTGCTTGAGATAGGGCGGTAGCAAGGGGATGTCTGCATGACTCAGAATTCCTCAGAGAGGAACTGCAGTGTCAAACTTGTGATATGGTGTCAAGATGAaatatgttttgaattttattaatagTATGGAGCATATTTCACTGCTCGTTCAAGTGTCACCCTCGCACTCGGTGAGTGTTGCCAATGGGAGCGGATGGAGATCAACACTTTCTTGACACTCCTGCTACCAAGTGCCTAGAAAATGTTTATACCTATAATTGTGTCAAATTATTGTTAATTGAGCACTGGAAAGACACTAGTAAGTTCAAGTATTCAAAAAGTATATTTCTCAGAATCTCATGGG-GCTCTTCAAGTTAGGCTCTTGGGGGACCTTTTTCTCCCCTGT---------------AAAGTACAATGTTTTAAAGTGTCATCTTGggcttaatttaattttgaaaagtaagtACTAGGAAAGCAAACTCATTTAAATTCCTGATCATACATATATGA-AGTATTAATGGTTTTACTTTCCAGTAGATTTTGCTTTTTTAGTTCAATTGTGTCACTATTAGTTAGCAATATTTGACTTAAAATGTTGTACGTGTGCACatgcgtgcgtgcatgcatgtgaatgtgtgtgttaAAGATACTTCAGGCTCAGCTCAGGGTCTTTGACAGTCCCTGCCTCTAGTGGATGTTAACAGTAAATCAGGTATGATTGGGAATcgagaaaaaaa--aggtaaagtaTTGGTTCCTGGGagagattttttctttcctaaccCCTTCTCTCGGgtcaaaataaat--agatttttctgAATGTCATTACAACTTCAGTGACTTCTTGA-CTTGATGGGAGAATAATCTCCTTTCAGGAATATAGATAACAATCCATGAGTTTCCAAATTCCGACCATatgctattaaaataa-ttttccacttttctgtTAAACTGTATTTAATCCTTTGTGTCCATGTGCCGAGGAAGATAGTAAAGATATATCTGAACTTTGCCTTAaacttctttaatctttttttaagcTCTCATTCATGTAACACAGCTTCAGCAATCTGATTTCAACACCCCATCTCCT-GGGGTAAAAACGCAAAGATTGCCAAGTTCAGAGCCCACTGTCAAACTGGTTCT---CCACTCAAAGGTGTTTCATTCCAGCCAGGGCTTCTCCACAGTGCCTCCTGCAGGTCTCTCAAGTCTTTTGAATTCCAGT-GATAATAAAGAGGGCTTTTGTAGTGACTGAAGAGTCCTAGAGCTGAGGGGATTGGTAATGACACGAGGCACAGGTGGTCGCAGAGGATTTTTATCTGGTGTAGGAAAAAAAAGTCATCAACCCTCTTACGAGGACAGCGTGTGCCACCAAGAGCACATTCTCCAGTGGCCTTTGTTCTTTGTCCTGGCTGCAAGCACAGCTTAGCAaccattttatattctgtttcattttcaagGCCCTTAATGATGTGGGATTCAGTTATGGAAGAAACCAACTGGTACAGCACGTCCTGCCACATCTCTTCACTTTCCTACAGcacaaatggaaagataaatCTCTCCAGAAATGCTCGCTGGCAGACCCGAGAGTCTACTGCTG-GCCCTGtctctt----------------ctctccagtgtgaagcAGTTCTGAACTATTCCACCAGCAAACAATGAAACCCGCTG-TTCCCAACGTCCCTCCTGGTCTCCATTCAGTGTCTCTTATCTCTGTTAAGATACAAATCC-CTTTATCCCTTGCCCC-CTGCTatacttctaatttttttgtgtgtgcaagaAATTATGTATTTCAATAGCAGTGATATTCCCATGCCTAAGGATATCTGCTGGCAGATGGAGCGCAAACCAGAGCTCTCTAGGCCTGAACTGACAATTAAAACATCTAGCCCAGATTGGTGGTGATTACTGTCTACCAGTTATCCAAAGGCTTTATGACCCAAGCTGACAATGACGGTCCATGCTATGGCAACAAAACCAAATCACACTGAAGCACATACTTGATAAAGAGCCTTTCATTTATATGAACAGCTTTAGTAATTAGTTTCTTTGtaagagaaagagc----aagagagtGATAAATTGCACTCGACTACTATCATATGACAAAAACGgt-ggaatgattttttaaaaagccttagcC----CTCCAAAACCGAGATAAAAATTATTATCGCTTT

a score=22659
s chr3           148719678 3511 + 160039680 AACATCCTTCATACAAGATACATCAGACATGCATACTTAAATACTGCAGCTGTTACTAACACAAAGCATGCATTAGTGACTAAATGTCAATACTTACCAGGTACATTTATAAAAAAATTTCACTTGCAGAAATGTGAAGGTTTCTCTTTTTTTTAAAAAAAAACAAGCATGGAGGCACAAGAAGGGTAAATCTA---ACTATGGCACAGCCCACTGTTTGATAATGAAGACAATCTTCAACAGCTGAA-TAAGTGTCAGAAATATCATGCACTGAATGAAGGGCTTACAATTGGAAGGC-CCCTTTAGGTAGCTAAA-TGTCTCAGACAATGAAACTG-CAGAATAT-AGAGATGGGA-TGACCCGACTTGTGATCAGAAAGCACTTCTCCAAAGGGT----GTTCAGTGACACCTTTGCTGGACCAATTGCTGGACCTAAAGATGCCAAGAG-GCCACAAGGACTAAGAATATGTAACTGAACAGAC-CTGGATTAACCAAGGCAAGTGTGCAGCTTTTCGATAGGCTC--CTCAAAAAGGAAGACAACTCTTCCTATTCAGA--CAAACAACTTTCATTAGCATGTCTG----GTCCTGCGCTTAGTCAAGTTCCA--AGAGAGCCGATACAAATTTTCTAAGTTCCCACAACAGCTTGAGCAGGTTCTTAAA-AGGGGTG-TAAGTCTGAATTTGTAATTTTT--GGATTTGTCTCTACTCTTGCT----CAGTAACTATCAATCTCCCAGTTAACCTTCTCCACAAGGTCAGCTCCATTCACATCCACACCACGCTGACCTTTGTCAAGAGCAATGGCAAAT---GAGGCTCGAAGCTCTACAAACCCTAGAAGCAAAATCAGTTTTTATTCTCGCACTTATTTATCTCATTTTAAACAGGCATCATGTACTATAGATATAATTATTATAACTAATTCATATGAACCAAACCCTAACACCAATTCTGAACACAAAAAGAAAGTCCACTTGGGGATATTCAAGGCAAAACAGGAGATAAAGAGAATACTGGTGGGAGATGGAATCCTACCCATCCCAGGAGATCCACTAGCTCTCACTCCATTACACACAAGTGATTGTGTACTGACATACATATATTATATGGTGGCATACA-GATGAGATAACCTTCACATTTTTGAGGAAATTGAAATCTTACGTAAACTAGTAGCAATCTCATGTTATATATTAATTGTATCTAAAATGAAGTTAGTGCTTAATGAACAGATTAATTCTAACTATATGTGATTTAAATTACACTTAATTATATATTACATTATACACATGTTATACAAAGATAACATTTGGATTAATGTTTTAAAATTTAAATAACCTTATTTGATTCATTTTCTTGAATTTCTTGACTTACTTTCTTGACTATCTTGATTTTACTTTCTTGACCCATTTGGTCCACCCATGGTGAATTTTATGACTTCCTATTCTTAGACTTCAA-----AAGCTAGTGT----------TTAGAGAAAAGCTGAAAGATGATTGGACTTGAGGAAACTTTTATTCTCCTACTGGTTTTCCCCACTGTAATTACAAGATCAAACAAATTTAAGGTAGGAATAAGGAACTAGGTTTAAGAATCAAAAAAAAAAAAAAAcagggatgatggcacacgcctttaatcgcagtactcaagaggcagaagcaggtggatctctatgagttcaaagtcagcctgggatacacagtgagaccctgtcttaaaaaatagatagatagatagatagatagatagatagatagatagatagatCAAAGAATAAAATTCCAACCTTATCATCCATGTGATATGCAAATAAGC--AACCCTTAAATCAA-------AATGTTAGAAAACGGAGAAAATGGAA-CAATTTTTCATGTAAAAGATCAAGCACAGAATGACACTGTAGAAGTCGACAAAAGGAGACCACAGCTTCCTACCTTTCTCTCTGTTTTCGGGATTACTAGTCACTCACTAACACAGGTTACTCTTGTTCAGTCCCCCAGCAACTACCGAAAGCCAA----TGACA-ACTCTCATAAAACATATCTATCTACATATCATTCTATAGAACCAAAAAATATGACCCTGGGCATGGTGAGAGCAAACTTGAAACTGCTGTCATGGCTAGGGATTGGATGGGATTCTATTACAGTTGTTGAGTAATCAAGAAGGCCCTTTACATCTTctcaagctggtcacacttgcactagggagactgaggcaggaggattattcattgaggtcatcctgggctaagaggctaatccagggttagcatgggctacctaggcagagtgtctaaaaaattcaaaattgttgttatgtagctcttagcgtctgaagtgcaaaatgggttcccactgggtgctaacc-agactgactggctttctggctgcatcttggagagttcctctgcttgttttcttcacactccagaggctgttaacagtctctggact-acatcacctttccaccttccaagctgaccacagtggatga-gtttctcacatctccttgcc-atgacaatgtcttacca-atacacagaccttagtggttaggtttgaatccattagataacccagtatgctagttata--------------------------gcttgatttcatctgctaccacaatccttctttgctatggaactt--catgttcttatgtttcaaggggtagaatgtggacatcttttagagagatagt----ctgtctaccacaCAGATATTAATATCCTGTGAATATCCTGAAGTATCT-AGTAGGCTTGATGTAGTCAGTTTGTGTCTGACAAAGTAATAGATCAGAGACTGGCAATGT------------CAAACACAGGA--------AAGACTCATACTCAATAAATGTTGCTGTATTTTTTAATTTGAATGCACCTAGGACTGATGGCATCATTAAGGAAGCCTGCAAGCCTGGAGAGGACTCTCACTAACAGCCTATATGGAAGAGGGACTTCAGTCCCAGTCTCTCAAGGAC----------CAGCAACTGAAgtgagaccccaaaaggaatccagcctaaaaatacactgatttttaacccagcaagacagtgagcttgactaaagacttaactgtgcattgttgta--------------agtggctaaatttgtggttattt--atggcaccaatagaaaGGCAGCAGAGGCATCAGCCGGTGTTGCCTAATGGGTTCTCAG-AGCTGTCTTAGGAATTCTGA--------GTAGGCT--GCTCATGGTTTAATCCCT--CAACAAGTTCACATGAGGCACCA--------TATTAATA--TATAACATGATTGCTTAGCCCTATGGTGTCTTCCTCT----ACTCATGAGTTTCTTTGGCAACATGCTGATGCCTCTAATTTCTACTGTCTCCCTTCAGAGCATATATTCTTCTACTTAATAAATAAATATTAATCACTCGGTGCAGAATGCACTTTCCTGCATTTTAAAGAACTAAATAGGGATAGAGCAAAATTCTCCTAATTCCTGTGGCTCACTGTACAATGAGAGAG----ACTGAAATATACTTTTAC---------------TAATTGCACAAattagttaccttagttgctgtaacaaa-taccatgaactcagtggtttat-----acataaatttatttctt--ggtctgg
s HiC_scaffold_1 135391089 3003 + 233722169 AATATCCTTC--------CACATCAGGCATGCATACCTGAAAACTGAGCAGGTCATTGTTATAAAGTATGTGTTGGtgattaaacataaataa----aaaacacatttatcaAAAGGTT-CACTTTAGAAAATATacagattc-------ttttaaaaagtgctgaG---GAAGATAAAGCAGTAGAAAATGTACAGAGTTCTGCAGCCCCTAGCATTCAGAAACCAAGAAATTTTCCAATAGCTGAAACACATGTCAGAAATCTCATGCCTAGAATCAAAGGATCACGAATGAAAGGCACCCTTTAGATATCTAAAGTTCCCCATCCAGTGGATCTGGCAGACTATCAGACACAGGAATGATCTGACACATAATCTGTTAGCCGCTCTCAGAAGGATCTTTGTTCCATGGTTGCCTGGATTTACTGATGGCTGACCCTGGGGATGTCAATAGTGCCACGCAGACAAAGAATACATAACCCAACAGACACAGGAAACACTCGGGGGAGGCTCTGATTTTTCAATGGATCTAGTTCAAACAGAGGGAGAGCTTTACCTATCTGAATGCATGTAACTGTAATTGTAATATCTGCATGATCTTGTGGCTGT---AATTTCATCCGAGAGCA---------TTTCTGACTTCTTAGAACAATTTGAGGAGGTTTTTAAGCAGTTATGCTTTCTCTGAATTTATGATTTCCCGGAATTTTTCTCTATCATTGGCACAACAGTAATCGGCTGT------AGTAACCTTCATTTCACAATCAGCTTCCTTAAC-------------------TAATTCAGTGAAAATCCAAatcagggggctggaggttt-----agctcagcggcataa---------------gcacctg-------ccttgcaagcaggcg------gtcgtgagttcgatccccggtaccgataaaaatgaa---------------------aaagacaaaaaaaaa------------------aaaaaaaaaaaaaaaaaaaaaaaaaga-------------aaatccaaatcaGTTCCAAAGAGCC---------------------------------------------CTTGTAATTCAAAGCGGCAAATATGACTGGGAAATTTACAAGCCCTAGAAGAAA-------------------------Aatctggggtt---------------------------------------------tttgttgttcttgtatttagttt----------------------------------tctcatcttaaaatatcattaagattatttaattgattttta------cttCCTTAATTTGT------GATTCACTTGATTTACCTA--TGGCTGT----GTCTTACTTTTCAGATCTGCTTTGCC------------ATTCCAAGGCTTGC-AGTGTTAGAATTTAATGGAAAATCAGGTGACaggaataaataatagaaaagtagAAAGGTCTTAGGGTCAGAGGAAA-TTCCAccattttagttactttctttgcCACAAATATTAGATCAAAATTCTTTAAAG-AGGGAGAAGGAATTAAGttcaaaagtcaaa----------------------------------------------------------------------------------------------------------------------------------------------------------------------------gaatgaaattctAACTCTGCTATCAATTGGCTGCACAGATTACTTAAACCCTCTGATCTTTAGCGTTCACactgaaagacagagaaaatgaaaacaatccgatctataaaacataaaatacaga------ctATAGCAAGCAGTGGAAG-AGATGAAGTCTTCCTACTAGCATATTTCT-------ATTATT-------------CATAGTATTCACTTCATCAGTCCCTCAGCAAATGCGGTGTGCCAAATAATGCCATGCCCCCATTAAAGACATGCATGCCC----TACTTTCTAGAACCTATGGGTATGCCACTATACATGATAAAGGCAT-CTTGCAGGTGGAATAGAGGTCATAGATTGCATTGGGTTC-----------------------------------------CTCCTGCTGGTGATAAAAGCAAT----------------------------------------------------------CAGTATTAGT------------------GGTTTTAAACAATGTAAATCTGTTATCCAAAAGTTTTGGAAGTCGGAAGCTCAAAGAGGATCTCACCT---TTCTTACTGAGTCTGAGATCCTTTCTTGCTGTCTACTGGAGA-----TTGATTTGCTTTCTTCAGAGTCTAGAGCCTCTCAACCGTTCCTTGGCTTGCAGACACCTTCCCTGTTCAGTGCTGACAATAGCTAAGGACAGTTGTCATATTTTATTATCTATCACTACCTCCCTCCACACCAAAAGACCTTTGTGATTAAATTGTAACTAACTGAAGAAC---GCTTGTTAATCTTACTATCTTGAAGTAAGCAAATACACAAACTTAATTTCATCTGCTTCTTTAATTCCCCTTTGCTATGTAATTTAACATATCTATAGACTCCAGGGATTAG---GTACACATATCTTTGAGAGGTAATTATTCTGCTTAACACACAAACCTTAA-AGTATACAGACgatctgaattatttcacttggCTAAAAGTAATCA-TACGAGTCTTA------AATATAGAAGAGAAAGGGGAAGTTTTTGAGGGAAGCAAGAACAAGAGGAGCGATAAGAGCCATTCTAATGCAACGCAAC----------ACTCTGGAt----ttaagacaaaagaaacaataaagaaagc---------TGTAGAAG--------TGACAGCCAGTCCTGGATGGGACCCTCAGCCCCAGGCTCAGAAGATCTGAATTCAGACAATAACCAAACTGGGCCTTCTGCAGGAACCCAGCCCTCTTAGCTCCTTCACGTGGACCCAGTGAGACCGGGGTTAGGCTTCTGGCCATCACTGTACATTAttatacttttatcattttaagcTACTAAATTCGATGTTATTTTTCTTGCACCAGTT--AATGCAGCAGCT-------CCAATGTTACTTAAAATGTTCAGTGTAGCTGTCATAGAGGTtatgaaaaaaacagtaaaccaGGTGCATGTAATAATTTCTATCAGCCAATT-ACAAGATTTACCCCCTGTCTCTAGTGATACTTGTGTGGTGATTTCCTGTTcctattctgtcttgttctcatTAGCCATGAGTTTCTTTGGCTACATGCTGGGCCCTCGAATTTTTGCCTTCTCCTTTCTGAGCATACATTCTTCTACCTGATAAACATATATTAATCATCCAGTATGGCAGGTATTTTGCCACTTATGCGAGAGCTAAAGAAAGATGGCACACAATTTTCA-ACCTCCAGGAGTTCACAGTAGACTGGGGGGGGGgaatagatagatacatagacagacagatagatagataattgtACAAATTAATTGCCTCA-TTCTTACAGCAAAGCAGCATCGCATAAATGACTTACAAACAACAGAAACCTATTTCTTACAGTCTGG

a score=37689
s chr3           148726482 1346 + 160039680 AAAACCATCATGTCTAGAG-TAGAGGCTTCCAGGTAGGTC--TCTATTGAGCCATTCTCGCTTGTATTGTCACAGACACGTCTGAGTATCTGAAAATTTTCTCTCCAAAGTGGCCAATTAGAGACAAGAGGGAAGCCCAGGCATGAGGCTGGCACACAGTTCTGATTGAGTGGAGTGAGAGAAGCTGGGCACTGAATTGATACAGGCTCACTAAtttcactcagaccacctgcctggttcagatacaagccagtgacctagacatgatgggctattaccagccctctgCTGGCATTCCGAAATGACTGCAGAGGGGACACATTCGGAAACACAGGAAGCTGCAAGTGGCAGCAGAACAACAGAGAAGAGGTGATTTTCCAGGAGCATTCTGACACTCTTTACACCGcacacacacatacacacacacacacacaGGCTCAAGCATGTGGGTACGCACACATGTCATACACCCTCCGTATGCACAAAGTCACCAGGAGCTCTGTTGTGTGAATTAACAGGATTAATCACCCAAAACAAAACTTTTTC----TAAGCTGTGA----CAATGTGCAGCATTACCGGGGGTGGAGCTCCTCTAAGCAGACTTTTTCACCACATTTCCTGAGGCACTGGAGTGAAAACTTCTGAATGCAACAATCACTTCCTAATTTGCTCTTTTCCTGTCAGACACGTGTGCAACCGTTTTGTTTTTCCTCTGAGACAGCTCATATTATATGGAGGGAAAGGAGGGAAGG-AAGGCACAGTGACCCTGGAACCGACAAACACTTCTGATCGGACAAACACTTCTGAGAACAGGGACACCAATCCCAAACCTCAGGCAATTCACAGCCTCTGTCTTCGCTTTCTTCTCTCATTTCTCATGCACTCACAATATTATAAAGGGAAATCTCAAtctctctcccctctctctctctctctctctctctctctctctctctctcCTTTTATTTTAAATTATTGTCATTGTCCCCTGTGTATGCATC--------------ACTGTTTCAGATGACAATACACCAGTAAGTTTGATATTTTAATGGATATAATAACTGTAATAAAGAAAGGAAACCTCATAGTCACATGCAGAACATACGTTCTTTTTGGACACTAACAACAAACTGAATTATAGCAGGCGACATAGTTCTATATAGGGGAATTCTATATTCATTTGCCATTGAAAGTGGCTGGAAAGACAACTCTGAAATAAACGGAGGAGGCTACTGACATGTCCAAGGAATAGGCCATGCATTGCATTTCTCTGAGGCTACACCCTCGACATGCACAATTCTTTTTCTCAGTCTCTCAGGCTCTTCCTTTAGGGTCATTTACTCTAAAGTTTACCCTCAA
s HiC_scaffold_1 135396587 1169 + 233722169 aaatcaatcCTATTCAGAAATAGAAACCCCCAAGTAGACTGTCCTACCAATCACTTCTC-CCTGCTGTGTCATATTGAAGATTGAGGGACTCTGAACCTTGTCTTGAAAGTGACCAGTTAGGGACCAGTGGGAAACTCAGACCTGAG-CTGGCAAAACGTTCTCATTGGG-AGAGGGAG-GAAGCTGGGAACTGAACTGAGACCGGCCTGCTAATTTC-CTTGGCCCACCCGCCTC-TGCGGACACAAGCCAGTGACCTA-ACATGATGGGCCATTACCAGCCCTCTGCTGGAATTCTGAAATGACTATGG-GGAGACGAATGTGGGGACACTGTGATTTGCAAGTTGTGTGAGGACAGCAGAGAAATAATGGCTTTTCATGACTGTTCTGAGACACCTCAGAC-----------------------------------------------------------------------GCGTACACAAAGTCACCAGGAGCGATGCTGCCTGAATTAACTGGACTACTCACCCAAAATAGAACTTTTTCTTAATAAGTTGTGACACGCAATATGATGCATTATC-CCCCCAAAATATCTCTAAATAGAACCTTTCATCACATTTCCTGAGGCAACAGAatggaaacttttaaa--atacaattatttcttagtttgctctttttctgtcaggcac----gcaactgcttttcttttcttctaaagcAGTTCATAGCATGATGagtgaagggaaagaaagcaaagagctAGGCTCGTGTCATCCACA----------ACCGAAGAAATACGTTTATTAAGAAGAACTCCCACCAGAAATCTTAG---------AGCCTC-----ACAAGGTCTCCTTCTGTTTC-CATACACTCACACTATTGTAAACAGAAA-----------CGtccctct-----------------------------------cttttattttaagttATTGTGATCATTCCCTGTGCATGTACCAACCAGTGATTTAAACTGTGTCAGAGGATAATACACTAGTAAATATGGTATCTTAATGGCTATAATAGctataataaagaaattaaatcagaT-GTCATACGCagaatgtacatttttttctgcCGCTAACAATAAGCTGAATTATGGCAGGCTAAATAAC----TAGAAAGCAAATATGTATCCATTTGCAAATGTAAGTGCCTGCAGAAACAACCCTAAAATAAGCAGAGGAGGCTCCGGAGGC-TCCGGGGAGCA----------------------------------------ACACGCTTCTTTTTCCAAAGCTTTCAACTTCATCCTCCAGCATGACTCATTCTAAACTCCATCCTGAA

a score=108498
s chr3           148728529 3627 + 160039680 CAGGGCCCCGATTTTAATATGCATATAATTTCACTTTGGTTGATGAATG-ATTCCAGCATGGCTAAACAGCAGGAAGGGGCAGGATGGAAAACTCTCTTGTTCGTTCTCCCACTTGGAGGTGGTTACTTTTTAAGGGACTGGTACTGGACACTGTAGGAGTGCCTCTTTTCATACACCCTAAAGCACTCCACGGGCCCCAGGAGTCACTAAGGCTAGTGGGTTTTAATAGTTATAGATCTTAAATGGAGGGTTAGAAAGTGTTTCTTTTCATTACAATTACAACAAGGAATTAACCCCAAGGGTATCCACTTAATTTCATAATATATAGACTGGAACGCTAATGTGGCCTCTCTACAGGGCAATAAAGAAGCAACTGGCCCTTCTCTCCCCAGGGTGGGTTTCTATAAAATGtctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacaccacaTT---AAATGAAGATGATTTAAAGTTAACAAGCTCCATAATATGCCCAGCTTGGGTGCCTGGTGTGAACCACTCTGCACAGGCAGTGAGCCTGGTTTGAGAGACCCTTCACGGGCACTGAGCCCTGAGGCTGCTT------CTTGCAGTGGGAGCTCACACCCAGCCGGCACTTGTCTCTGCATCCCTTCAGTGACACACAGA---------------GAAGGAAAGATCATTTACAATTAAACCCAGAAAGTCACCAGGATGACAGAGAGGCATGGAGCGGGACTTGTTAATTGTCTCAGTGCTGAGATGAGACCAGTAGTGCATGCTGGCCAAGGCTGGTCACGTGATCTTAAC--TCTGCACTCTGCCACAGACCTCAGCTTG--CTTGTGGGAACTCACTTCACAGTGACAGGAACCCGGGGCAACACCA-GGGTTAGGGCTG-CCATCTCCGGGCTCCAAGTGTCTGAAGCCACTTCCTGGCAAAGATTTGATAGCCACGATTCCTCCCG-TTAGCCCCAGCCATTAGAGGCATTTTTATTTCCCAGTGCTTTC--ATGATGTTGGATCAAGG-TCTGCAGGACAAATGAGAGGAAGGACACTATTTCAGAAACACAGCTTCAGACGGAGGGGGTCTAGGGACATCAGGAGAGGAGAATGGCAATTCAATAAA-GCACAACTCTTCCAGAAGAAGGTTGTTCCCGTATATTAGACATTTCCAACATC-GCTGTAACATTTGACCTGCTCCAGGCCTCCCGCCAGCCATACCCTGGGACTCATTTCTTCCTTGCTGCTGAAAGTGTCAGTGAAGTAGAAATCTGCAGACTTCCCAGTCAACTGGGGGAAAACTAATGATCCAAAGAGAAGAAATAGCCAGTCCCCCAACTCATTTGTTCACATCTATCATGCAGATCTCTTTTCCAGAGTCAGATAAGGTTGTATATAAAAGCCACAAA-AGAGCTCTGGCTTCGGTGAAAAGTGCCCTTTTATAAATCAAAGTTCCCAGTCTCCCTCCTGAGATAGGAAGCAGTGGCTTGAAGCAGATGTCAAGAGGGCTGTAACAGAGCGTCAGAGATGGGGAGTCTCTAGGGAAGACCAGGGCAGACACATATCATGAGAGAAAGCTGAGAAAGTTCAGAGTCTTCTCTGACCGACTCAGAGCTACAGAAACCAGTTCTAGAAGAGGTCGGTATTGTTCTCAAGACC-CAAGAAGCACAAAGGGAAGGGACAAAGGACAGAAGCAGGAATACATAGAAAGCCAGTAGGGCATGGGGCGACTGTGTATGTGGCTTAGCAAGTGAGCTTCTAGTCAGGCAAAGAACCACATCTTTGCAATTGCAGGAGTCCTGCAGGAAAGAAACCCGAGCGATAAATATTTGGCTCATTGGCCATACTGCCTT-CTTCCTTCCTTATTACTCTTCATAAAATACCATGTCTCTACACAGTCAGATCCATGAGCACACAAAACTTTGACTCATTAGAAAGTGTGCCCATTTCAAAATAACTCTTAAAG---TCTCCTTCCCCATAACTTTGT--GGTTTTTATAGACTCGTGATCTGTGGGACTTGAAGTATTTAAAACACATACACAC--------CCCTACTTGTTTTAGTTTCTCTAAATCTGACACACCCAAAGTGCCTCTTGCCTTTAGCAATTATAATTAAAAAGAATAAGCTCACCTGTGTAGAAATTTCTCATCTCTTTCTTTAAATCTTCTTGCACTGAAAACTGTCAGTGTTCCTTATTTTATTTATATATTACCTGGAAAATGAGTACAAAACAATCTTCTAGTTATAATTATATGAGACATACACCATACAGTGTCAAT-TTTCTGAATTTTCCCTTGGCATTATCTAA-TTGACTATCATATCAAATATCAGCTTATCTAATAACAAGGAATTTAATCTTTATAACCAACCCAGAGAACATCTAAATTTGGTATACCAGACGATTTTTCTCTGGTAGATTATTTTAAGAGGTG-TTTAGCTAAACTAATCTTAAATAGCAAATTTTCACATTGTTCAAGTAACATATGACTTTAGCTTGCTGGTATTTTATCACGGCAAAGAGGTTCAAATTTATTCATATCAAAACATACTGAGTAAAATTT-CTCAAATATCTACTACTGTTTATTTTGTTTATACAGTGTTTGCTTTTTCAGCCTTCTTAGACACATTAATCTTTTTGATATCTGATAAAACATCACACTGTTTGATATGCTCAATTTCACTTTGTTGAGGGTTAGCTTACATTCTGCCAAAATGTG---AATTTAATAATTCTTCAATGATAGAAAAGTGTGTTATTTCATAAATAAATTAGACAAAGCCATGCTTCACCCACTCCCTTCCTCAATGACAGGTAGAAGCTACTTCAAAGATGAGATTCACACAATGCATACATGTGCCTCAAAAAGA-------TCTTTCCAGTCATC------AACACTGCTAGATTACCAAAGGAGTATAAAAGTCTTTTTTTTTTCCTACTATTGTGGATTCTGGACTACTGTGCAAATCAGAAGTAGTCCCCTAGTAACTTCTTGAAGTGATGCTATTACTGCCTAATGACCCTGGAGACAGTGGCCCAAAACTGAGAGGAGCTGTTTCTCTCAGAAAACCATTTCTAGGGCTGCAATGTTCTTGCAGTCGTTGTGTGTTTCGGTTTCGGGTCTTTGTGGAGTTATTCTGTGGTTTA-------TTTTATTTTCCCAAGGAGGCTCTCTTTGTCCATCCTTACTACTGTTTCCTTTGAGACA-AGTCAAATACA-CAGAAAGGCCCTTAGGT--AAGAGTCTTGGTCTCTGGACTGGAAAGGGAGGTTAAAGAGACTTGATGAGGAAG-TGGTACTGAAGTCTATTGAGTTACCTAAACAGTCAATGAAGGCGGAGAAGAGGAAAGGGAAGGAAAGCAGGGTCCATGGTGAAGGACAAAGTTCAAGG--------------TCAGTACCAC---------------------------------------------CCTACATTctaactgaagcagatacttcaaagactatgatgatcaaccctgctaatactcctgatggtttagggctataaaactagccggaaactttatcggtgctgcagttatcagggactttgataagagagcttctgggagggg--gacagggaaagcttggttagcctgcctccgaaagagaaAGAAGACACAGCAAACAAAGG---CAAGAAAATCCCAATGTAAAAAAGCAG
s HiC_scaffold_1 135397810 3422 + 233722169 CAGGCCCATAATTGCAATATGCATATACTTCCCC---GGTTGATGAGCACAACCCGCCAGGGGTAAACAGCAGGGAGGGGCTAAATGGAAAACGCTTTTGTTCGTTTTCGCACTTGGAggtggttattttttaaattactgatatCGGACACTGTAGGAATGCGCCTTTTCACACCCTCCAAAGCACTCCACTGGCCCCAGGAGTCACTAAGACTAGTGGATTTTAATAGTTATAGATCTTAAATGGAGGGTTagaaattgtttcttttcattacaaTTACAACAAGGAATTAACCCCAAGGGTATCCACTTAATTTCATAATATATAGACTGGAACGCTAATGTGGCTCTTCTACAGTGTAATAAAGAGGCAACTGGCCCTTCTCTCCCCGGGGTGGGTTTCTGTAAAatgtatc----------------------------------------------------------------acaaaaaaaaaaaaaattgtaaaaggaaGAAGATCTGAAGTGCACAAGCTCCACAGTGTCACCAGCTCCAGTGCCCGGGGTG----------CGCGGGCACTGT----------------------TAGGCACTCA------AGGCTCCTTTCCTTCCTGCCAGTGGGAACTCAGTCCCAGC----ACTTCCCTTCAAATCGCTTCACTGACACAAGGAAAATGGAAATGGGAAGAAGGAAAGATAATTTACAATTAAGGAGAGAAATTCACAAAGATGGTGGAGAGAC-TGGAGCAGGACTTGGTAATTACCTCGTCTCTGAGATGGGACCAGCAGAGCGTGCTAGCCAGGGCGGGTTGTGTGGATTTAACCCTCTGCGCTCTGCCAGTGACCTCAGCTCTATTTTATGGGAACGCGACCCCTATTTGCTGGAAACTGAATCATCACCAAGGGTTAGAATTTTCCATCTCCAGGCTCCCAGTGTCTGAAGCCACATCCTGGCAAAG-TTTAAAATCCGGGATCCCGGCTGATTAGCCCTGTCGGTGAAaggcatttttatttctcaatgcTTTCTCATGACATTTGATGATGGCTCTGTGGGACAAGTAAGGGAAAGGACACTATTTCAGAAATAGAGCTCTAGACAGAGGTGGGGTGGGGACAGCAGGAGAGGCAAATGGCAATTCAATAAAAGCACAACCCTTCGCGGAGAATGTTGTGCTCTTATGTTATACATTTCCAACATCTATTGTAACATTTGGCCTACTCCAGGCCTCCAGCCAGCCATAACCTGAGACTCACTTCTTTTCCACTGC---AAGTGTCAGCTGGATGGAAATCTGCAGATTTCCCAGTCAACTGGGCGAAAACTGATGATCCAAAGAGAAGAAATTGCAGGTCACCCAACTCATTTGTTCCCATCTATCATGCAGATCACATTTCCAGAAACAGATAAGGTTATACATGAAAGCCACAAAGGGAACTCCAGCTTCAGTGAAAAGCGGTCTTTTACAAATCCAACTTCCCAGCTCTCGTCTTGAGATAGGAAGCGGC-CCTTCAGGCAGATGACAGGAGATTTGCCAGACAGCAGCGGAGAAGAG--CTCTCCGGAGAGTACCCAGGCAGGCGTTCATCACCGGAGAAAGCTGAAGCGGGCGTCAGCCCTCCTTG-CCTGCTGGAAGCTACAGAAACCATTTGGAGCAGAGCTCAGTGTTGTTCTGAAACCCATAAGCAGCAGAAAGTGGAGAGA------------------------AGAAGGC-------------GACACCTCTGTG---AGCACAAAGAGTGAACTGTGGATCAA-----------------------------------GGAGGATGGAGGACC-----ACAAATGCTC--CTCAGAGGGTAGATTTCCTTACGCCCTTTCTTGAGACATGCC---AAACTGGATGTTTCTAGAAGCTGAGTTTTCTCAATATATCAAACTTAGACTAGTTAAAAGTTGTGTTTATCTCAAAATTTTGCCTTAAGTGCTTTTCTTCCCAATGACTTTGTTCAAGGTTCATAGACT-------TCTGGGACTTG-AGCGTTTAAAAACCACACACGCGAGTGTGATACCAAGTGTTTTGGGTT-TCTAACTTCGATGCACTCTAATTgactctttcctt------ttaaaattaagaat--taagcTCATCTAGGTAGAAATTTctcaattctttctttaaatgttttcgTGCAGGAAACTGttaatgttttgtgttttacttCTGTATTAAACAGAATTAGAACAC-AACCAATTCTCTAGTTAGGATTATATGCCATATAAAAGTTACAAGATTGATATTTCTGAATTTCCCCTCaacattagaaaatttaaatatcctAGTCAATATAACACTAGCcaataaaaagcaatttaattttcataatgaaCCAATAAATCATCGAAATATAATGTATCAGAT--TTCATCTCTCTTGAATTGTTGTAGGAGAGGTTTTAGCTAAACTTA-Cttaaa--------tttcacatt-tacaaatatta-aaGACTGTAGTCTCCAAGGATCTTACTGTTCCTA--CGGCTAAACCTTACTCAGATCAAATCATACTTAGGAAAATCTactgaaatatttactatttattatttta-----acactATTTGCTTTGTACCTTTTCTTTGAGACTGTAATCTTTTTTATATCAGATATAACACCATAGTATTTGATATGTTCAATATTACCATGTTAGTGATAATTCGAAGTTTAACCAAAACTTAAGTAATTTAATATTCCTTAGCTGACATAAATTTATACTGCACCATAAATAGGCACGACAAAA-TATTCATCATACATCCCTTCCCTCA---AATGGTAAAAACTGTTTGAGAAACGAATTACACAC-------ATAAGTGTTCCATGAAGCTTTGGATTCTTTCTAGATTCCCAAGATAACAGTGGTAGATGGCCAGCAGAGAACAAAACTCATGTTTC-------------TGACAGCTCTATTGCTGTGAGAACCAGAAACATTCCTcgaatattttcttgaaatt-tgcCCCAAATGGCCAGTGATCTTAGGGACTGTGGCC-----------------------------AGTTCATTTCC------------------CAACACTTGTTTTTTTCTATCCTGCTTCTCCCT---TTTGGTCTGTGAGACAAACAGTTTTCTAATCCTCcaggga------cttt--------taaaaaatgttaaattagaTTCACAGTTGTATTTATCAGATAACCACTTAGACAAAAGAGCCTGGGCCTCCAGGCTCTGAA-ATAGGTGAGGGAACCCCCAGAAGACAGAAGACGTTTAAAACCATGGCATTACCTAAGTGGGGAATGTGGCTGGAGAAAGGTAGATGATGTGA--------CCCATGGAGAACCCCAAACCTGGAGGGGATGAGAAAGAGTCCAGCACCACGAGAAGGAGCAATCAATGAACCGGGCACCTGGACATGCCTCGTATCCTAACTTTTCAGTGAAGCAGGTGTTGCAAAG---AGAGTAATCAGCTC----------CCTGA-GATCCAGGCTCAGATAACTGATCTGGGACCTGATGGATGCTGTGGTTATCTGTGACCCTGATAACAACTCCTCCGATGAGGGCTGACGGGGAAAGCATGGTTGGAGTGGCTCCAAAACACAATGTAAA-ACAAGGAGGAAAGATTTCAGGGAACTTCCAACCAAAGGAAGCAG

a score=58636
s chr3           148733034 2540 + 160039680 CTCCTTGACTCTCATTGCATACTTTGTTACTTGGCTCCAGTATTTATCTCCCAATTAACACCATAGACCTGGCCTTTCTTTTCTAGTACTATAACCTTAATTCCCCAAATGGAAAACCGGGGACTACAGAGAGTAAACTCCACGTATAAACGTTGAACAAGCAAG-CAATGGAAGTTCCAAAAACAGATCTTTTCTACACTCCAGATGTTTCAAAGTGTGCCATTACCATTATCAAGCTTATTTTTTCTTGA---------AAAACAAAAGAAAAA-CAAAAAACATGGTTGACTCCGTAGTCTGG---CAATCGGGCCTGTAGTAGTTGGCTCTGAGAGTCTGTGATAATGACACCCCTGGGCAGGC----------TACAAGATGCAGACCGAGAACATTAACGATGATCAGGTACGGC-CAAGACAAAGGCTGCCACTCATCCTGAGGCCCTGTGCTGTGTGTGCAAACGGCGGTGCAGAGAAAGGATCATTTGTTTAACAAACA--------TCCAAGATTTAAAACCATTAAAGAGGAAGCGAATTATCCTTGGATGTTTGCCTAGCGCATGTGATCTGTCTTCTATAATTTTT--GCTGCTTTCTACCAAATCACTTGAGAGTTCAGTTAATATTTCTGTACTGGTTTTCCAC------------TGGGCTGTAAAGTGAAACTCAGAGAGATTAAGCGCTCTCCACAAGGGCAGTTATCTGCAGCTGCTGAGCGAAGAGGGCTCACAATCACGCTGCCTGCTTTTCTGAGCCTGGCTAA----GCCGACTAGCCTTCCAAGGA-----------AATGAAGAGTTGG-----AGGGGTAAAAGTGGTGCACT-----GGC---CACTGTAGA-------------TAATACTGATTTTATTTCTCTGGGCTGACTTGTATTGATTTGTGCCAAGCatatttataaaaataaaaataGTTCGTTCATGAATATTGAGCCTAAACCCTGCTAGCATACTTATGCTCTGATTGAGTGGCATCAAAAAGCAACTGAACGCTGTCTAGTGGCTTGGA-----------------CAGCACTGAGACAGAAGGAAGCCATG------CCCACA---------CTTTCAAATCTTTCCAGCTTACCTTTTGAAGGTCAACTGGTCAGCCCTGCCAAACAGAAACAAAGCAATGAAAGGAACTTGGGAACTCGCAAAATAGAGATATTCTCCTGGGGAGAAG---GCCACTGCA----------------------------TTGACTAAAGCA----------------------GGGTGTCACCTTCTTGCTAAAGTTTCCTGAGTTTGAGGAGTG-AGGAAGTTTTGTTTT--AAAGCTGG-TTGTTCTTTTAAGATTGTGTTCCCAATTGAGAAATTACATTCCATTCTTCTCCATCTCCAGCGAAGGGGAATTTCACACCCCGGTTCCAAACCACATAGTAAAATAATAACATTCTGCGTGGGGTGTAGAATGACTCTCATAAT-CTCCTC----TGCACCGTGCAAAGACTTTTGCAAGAAT-GAATATAAAGCGATATTGTTTGATTACGTCCCTCCGATGAGGTCAGCGCTGGGCAGCCAAAGAGGAGACGAGAAGATCATTTTACCTGAGAGCCCCATAGATGTGTAAG-CCATTCACCCTGGCTCCCTCCACTCTACCCTCTCCCTCCCTCCTTCCTTTTTTCTTTGC-TCTCTGCAAATGTCTCTGCCCTGTTTACTGCCAATCTTGACCTTCGAAAATAACTGAGCTATGTTCTTGTCATTAACGATTA-CATCCCCCAGCAGATGT------GGCAGGCAC--------------------------------------------------------------------------TGCAGCCTGCTTCGTTGTTCAC--------------------AGACAATCCAAAGTCGGGTGGAAACTTGAAGACAAAACTAGACCTGTTAAGCAATATTGAAAAAAGAATGGAACTAAGAAATATATTCCAAATTAAAAGTCAATTCCACTTTATTTCCTGTAGGACACAGAATGA-------TATATATTCCAAAGTACATTGGACACACGAGGGGTTATTTTTAAAATTCACTGTTAA--GGGAAAAATAAGCTATAGAATAGCACAACCACA--------------TGCTTATACAGAGAAATA---------AAATGTTAAAGTCACATAAGACTTTTACTTTTATTGTTTGTTCTGTTTTCTACATTTTGTATATAATTAAAATACCTATTTAC-----TTAATTATTTAATAG--GTTTTATAGT-GTTAAAATTCTTGTGGTTCTATTTTTTTTTCTTTCTTCCTTTTAGATCTTTCTTAAATCTTGGAAAAGACATTTGTGGATacacacacacacacacacacacacacacacgtacaTATTTGGATTAGGCCAAG-TTCTCCTCTCTGAGCCAGCTGATAAGGCAGGGATTTAGAAGGCAAAAGCattatataatcagaattttatt-aaactgtctgggattttatagatcatc-tgttgaaaccctgcattttataatggagaaactgagAAGGATAAAGTTAGGAAAATATTAGGAGCTGTTGTGTGGGTGGAACCGATGG--GTGTGATGGGAGTTGAATGAAATTTTCTCATTTGTAATTACTGCAGAGAGCC-TCAATAGGGCAAGAACACAGCTAGCT----GAGAAGACAACC-TTCTCCTCCCAACTCTTTCTCTTCCCT-ACTGTATTTTCTGAGGCTTCTCAGCTCCCAACACCAAATTGCCCTTTTTTTTTTTCCTGGGGAATCTACA
s HiC_scaffold_1 135401625 2766 + 233722169 CTTTTTGAC-ATTGTTATATAATTTGTTTACTTGCTC----ATATGTCTCCCAGCTAAGAGCATAAGCCTCACTTTTCTTTACGG---CTATATTCTTAATTCCCAACACAGAAAAGCAAGGAATACAAAGAGTAAGCTTAATATAtaaatgttgaatgaataaatcaatgaaaGCTTTGCAAACAAGCCTCTTCTAGAATCCAAATGATTTAAAGTGAGCTATTCCCACTACTGAG--TATTTATTCCTAGGTGTTTTTCACATCAGTAGCAGAGTCTTGGGAGCTAGCTGGGCCCGCACTCCTTGCTCTACTGGACATACA-----CACCCCTGAGAATTTG-GACCATGGAGAACTAGGTCGTGCACATGCGCATTGCAGGCTGCAAGCTATGGATTCTGAGGAAGA----GAACTCCACATGGAAGGGTCAGCTCGCCTTGCTGAGATACTGCACTCCGTGTACACAGGATGACAGAGAAAAGAGAT----TGTTCAGAAAGCAGTGGCAAGCCCAAGATTAAAACCCATTAACAGG--AGAAAGTTATCCTCATAAATTTCTCTACTGCTTgatatttgttttccattattttttcgTGGTAGTCCACTAAATCTCTTCAGAGGTCAGCTAATGGTGCTGTgctcattttttacatttttacagagcaaaatgTAAACCTAAACTACAAGGGATTAAGTGCTCCATCCAAAGAAACTTAACTGCAGCTGCTG--CGAAGA--------ACTCACTCCTGCCGCTTTCCTTAGCCCGCCTAAAGCTGCCTCCCTGCGTACTCAGCATTGTGGCAGTTAATGAGTAGATGATTACCAGCAGCAATAATTGGTCACTACATAGGCATGTgctgtatacatgtgtatatcaTAATAAGGCTTATACTTCTCTGTGCTCACTTGTATTGACCTGCACTGAGAATATTTATGGAGGGAAAAA--GTTAATTCATTAATACCAAGTTAAAATCTGGGTAGGAATGCTATGCCTTCGTTGAACTATGCCAAAAAGCAATTACACATTATCCACTGGCCATGAATTTAACCTGTTATTTATACCAGTTAGGCACAGAGAATCCATGAAATTATCTATGGCCAGGCATCTTGGAAATTTTCCCAGCCTATTTTTCAAAGCTTAACTGGTTATTCTTGCCAAAtagaaataaaggagagaaagaaaccgTGGAGCTGAGAAGTAAGGCACatatcctgaaagaaaaataaaccaataaaacaaCATTACTAAAAACATGAAGGAgttttgataaaagaaaaaaatgcaaagtgaaatCTAAGAGTGT-GcccttttcttttagttttcttactTTTAGTAATGGAAGAAGTTTGGTTTTGAAAAGTTGGGTCATTCTTTGAAAACTATGTTCCCAAGTGAGAAATAACATTCCTTTCTCCTCTGT-TCCAATGGAGGAAAATTTCACACCC-AGTTCCAAACCACATATTAGAATAATAATATCCTGCCTGGGGTGTAGCATGACTC-CATAATCCTCCTCCCCATTCACCACACAAAGA--TTTGCAAATATAGACTATAAAGCA--ATTGTTTGATTATGTTTCCCTCAAAAAGTGAG---GTGTCAcataaagagg-gaaaaatagCTCAATTTAC----AAGATCTATAAATGTGTAAGAATATTTAGATGCGTTCACTGCTTTGTAGTTTCtacct------ttccttctgtcttttcttctctgttaattttttttttc--ttggctgcCAATCTT-------TAAAAGGATCAAGGTATCATCTTGTCATTAATAAATGTCACCCTCCAACACATGTAGAGAAGGCAGTCCCATTGCTGAAACAATATCTTTCCAGGTTGTGTGTTTTCTGTTACTCTGATCTTTTCAATTGCTTTCCCTTAACCTTGAAACctgcttcatttttcatttctaggacTCTGTTCTAAAATATCTTCCAAATTTGAGAGAAATTTTGGAGATAAGGCTATATctgataagaaatattttttgaaaaataggaaTACAAGAGCTCTCCCAAATTAGAAGTAAATTCAAATTTATCTTCTGTGGGACATAGTATAAAGATATTTAAACAGTTCAACGAACACTAGATACACACAAG--TGCtttgaatatttaatattaaatgggaagaataagatacaaaatggCATGATTATAGGATTTTCTTTATGTacatatacagaaaaagaaatgcaagtaaATGCTAACATTTCTTaag-------catttatcattttctttatattc-aaattttccataaaattaaaatatagtttagcgaacatttttcatttaagagacattttgtaggaaaaaaaaatcccacaataattcctattcttctttttctcttttaggcATTTCTTGATTTTTGGAATAGATGTttgtggg-------------------atatatatatatatatatatatggattagGCCAAGTTTCTGTTCTCTGAGCCAGTTGATAAGGCAGGGATTTAGAAGGAGAAAGAGTTATATAATcagaattttattaaaactgtCTGGGATTTTATAGATCATCTTTTTGAAACCCTGCATTTTATAATGGAGAGTCTGAGAAGGATAAAgctaaaaaattatgaaaagcaGATATGTGGATGGGAGCCACAGCCGCGTGA-GTGAGGTGCAGGAAGTTTT-GCATTCGTGATTGCTTTGCAGGACTGTGAATGCGGC----CCACAGCAAGTCTCAGGAACAGACAGTTGCTGACCTTCCCACTCCTTCCCTGCTCTCACTGTG--TTCTAATCTTTCCCGGCTCTCCGCACCAAA------ATCTCTGCATTCGCGAGGAAGCTACA

a score=9081
s chr3           148737822 352 + 160039680 TCTAATCTAACTGCAAAGCACACTATACGATATAATGGAGTCAACAGACATGCAGTGGGGATTATTGC-----ACAAATACTTACACCAGTTTCGAGATTTTTTTCCCTTAAGGAAATGTCCTGATATTCTGCCAGCACACTTGAAAGTACACAAAGCAG----TCATGGCTATTGTGTTGAAAAGAATCAGT-GTG-----TTCATCCCCTTTTGAATGTGTGGATACTCAAAGATTCTGACCTGCTATTCC--TTCTAGGTATGCAGAACATCAGCATATATCCACTGGTAGAATGGCTTCTTTG-TTGTTTATAGTTTAAAATATAAATGGCTAAAATTTGAGTCAACTTTGTTCTCAGAATCACTT
s HiC_scaffold_1 135413918 365 + 233722169 TCTAACCTAACCACGAGGAAGGTTGTAACGTACAGTGAACTACATGACCATGTGATGAGTACTTCTGCCTCTGGTGCGCACTTCCACCATTTTGGAGGTTTTTTACTAT--GGGAAATAGCCTTACATTC-AACAGCATATTATAGAGTCCCAAGTGCAGAGTTCAATAGCTATTGTGTTAGAAA-AATCAGTTGTGAATCATTCCTTCCATTTTTAACACATGGACACATTTAGAGCTTAATATTTCATTCCCTTTATAGCCACTTAGAGCACCAATATATTTTCATTGGTGGAATAACTTTTCTACTTATTTACA-CTTACAATATAAATTGCTAGAATTAGATTCTATTTTGTTCTCACAACCACTT

a score=42579
s chr3           148739513 1216 + 160039680 AAAGCCTGAGTCAGATTTGCAAACCCAGTTTCCAGTGTGCTGTCCTTTCCCCCACCCCCTTATCTGAGATGA--GAAGAAGGTATGGTTCATGAGAACATTGCTTT-----------GTGCAAACAA-----ACAGTGGGGTCTTCATGTTGGAAGA-------TTTTTCTGCTAAGATCTAAAAAATATTATAATTAACTACATATTCTGCATCTGAGATTTCAAAAGACAGTAAGAGAACCAGCCAGACCTCTCTGGGCATGACAAATATTTAACTGGAGTGTGTTATTCAGT-----CAAAATTTTGTGTTCTATTGTTTCTAATAAAATTTTGTGTTCTATTGTTTCTAATAAT---CCATTTGAACATCAACAGATTCAAGAGAATGTGGGTCCATATGGCCAAGGAAAGGACTTTAATTAAGAATCAAGATTTAGTAGTCATGCAGTCAATTATTTAGTTCTTAGCAAAAACAA-----ACCTAATAAACTCAAAACTATATAGAGATG-GCCTTAATCATCAA---TACATCCATCA---TGGTTAGGTTTGGGATTCTGTGAGCCACAAATATGATGTTCCAACAGCTAGGATATGACAAGTTGGCAGGAAAATAAAAGGCAGTCATGATCGTGAGCACTATAGGTGGCCAGGTGTCAGGTCCCAAGCCTTCACACAATTGAAAATGATTAGAGAATATTCCCCCTGATAAAAGTTCAGGGCACAAGATGCTGTTGAGTCTAGAAAAGGTAACTTTTCAACTACAGCTAAGGGAAGGTTAGGGGGAATCTAAGTAATAGAAAATAGCCAAGACTGATTTGGAAGCTTCCAATCAAATGTAACAAAGTGCATT-TTTTTCCCTGGGGATTGTGACCAGGTGAGGGACCAGCTTATG-AGGCAATCTCTGTATGACATGATTTATAAGAAGGCCC------------ACACAATCGCACACAATGGCATACCAGACAAGCTATATGGCTTTCCAAATGAGATGGTTACAGAATGAGACACCAAG----GAGTTCATGAG-AAGGAAAAAAATCACAGCCTTC-------TGCAGCCACACTGTTTAATCCATAAATTATCACAAC----------------------------TAATGAGTGACACATTGTTTAATGCTCTTCTGCTCCCC--GGAGGGCACCTCCCCCAAGAGCCC-ATGGAAAGAGGTTCCTGTGGCCTTTTCTCCAGTACAAGATCATTGACAGTGTCAGCTTTGATGTTTATTATCTCCACTCAACAAAATTA-GAAAATGACCAAGAAGAAAAAGAAA
s HiC_scaffold_1 135416498 1282 + 233722169 AAAACCAGAATCAGATATCCAAACT-GGGCTCAAGTGC----TCTTTTCGTCCTATCTCTGCTCAGAGTAGATTGGATAGGGtagagataaaaaggaaataggtTCCAGCAGGAATAGCACAAATAACACGGATAGTAGGGTCTTTGTGTTAGACAAATGTTTGTTTGTCTGCTGAGA---ATGAAAGATTGCGATTAACTCAACCCTCTGAATCTGAAATCCCCAT-----GCAAAAGAGACA--CAGCCCCTATCAGTCATGACA--TGTTCAATCAGACTGTATATTACAGTTTATGCAgggttttttatttgatttt----------gctttgcATTGCATTGTCTGTAATAATAACTCATCTGACCATCAACAGATCCAAGAGAATACACATCCA-------AACAACAGTGTTACAGGTGAGAATCAAACTTGAGCAGCTATTCAGCTGATTGCTTACCCCTCAGACAAATCAACTATAAATCAATAAACTCAAAGATCCATAGAGATGTGGACGAATCATCAACAGTACATCCATCAGCTTGGTTAGGTTTGAGACTCTATATGCCACATACATGATGTTCTAACAGCTAGAATGTGACAAGG-agcaggaaaacaaaagacaatcaT-ATACCAAGTATTACAGGGGACAAGATGTCAGGTCCCAAGTCTTTGCACAATTGAAAATGATTAGAGAATATTCCCTAAAATGAAGGTTCAGGGCACTGGATGCTGGTGAACCAAGCAAAGGCAACTTTTCAACTGTAGCTAAGGGAAAGTTAGAAGGACT-TAAGTAATAGAAAATAGCCAAGACCGATTTGGAAACTGCCCATCACATGTAACAAAGCACGTTCTTTTTTCCTGCAGATTGTAGCCAGGTGAGGAATTGGCTTATGAAGGCAGGCTCCATAGGATACGATTTCTGTGGGGACCCAGAAACTCGCTGACACAATTCCACCCAATGGCATGCTGGACTAGTTGTATGACTTTTCCAATGAGATGGATGCAGGGTGAGAAATGGAGGCAAGACTGCATGAATTAGGTAACAAGTCATAGCCTTCTCTCAGTTGCATGACCAACATTCAATCTCTAAATGATTGCTACAAGAGAAACCAACATTTTCATTCCTGCAGAATGACTGGCACATGATTTAATGTTCTTCTCCCCTCCTGGGAATGCACTTTGCCCATGAGCCCAATGAAAAGAGGCTTGTCTGATCATATCTCTGGACGGAGATCATGGACGATGCCAGCTTTGATGTTTATTACCTTCCTACAGTGAAGCTACAAAAATTACCaaaggaaattagaaa

a score=7379
s chr3           148743442 514 + 160039680 gaaactatgacacaaAACATGTTTATTCCAC-----AGTC----TTTCTACCAATGGCAGAACTCCCAAATTAGATCATACTACTTCAGGTTAAATTAGACTCCTATTTTAAAGTATAACTTCTTTTGGAAAGTCAACATCAGGGTTTTCTCCAACATCTATCTCCTGTTCCCTGGAGACCTATGAATTGTTTTGTCATTGAAGAAATGTCACATGCCCTCTATTTGCTGTCTGGTTACTGATCCGGCTCTGTC-CTGAGCAGTGCCTG---------TGCTTTCTGATTCTTTAGCAGAGGGCTGG-------TGTTATTTGGGTGAGCACTACTCCTTTCTGGTGCTTCTCAAACCCTCCCCAGCACACCATTGCACACACAGCTCATGTTCTGAGATCT-CCCACGTCTTCTCTTTGGCCTTTGCTTTCAGCTGCCCCCTCCATTCAT-CCCTATC--------------------TGAACAATCTCCT-ACAGGCATGTTGATGTCTAATTCTTAAATATCATCCCACACACTATTTGTAAAAGACTTGGAAAATGTTC
s HiC_scaffold_1 135419691 533 + 233722169 GAAACTAAGATACAGAGCTAGACTCCGCCACCAGTGAGCCCTCATTTTCACAGATGGCAGAA-GCAAAAATTAGATCTTGCTATTTCGGGTTAATTTGGGTACTTGTTTTGAAGCCGAATGTCATTTGGATAGTCAAATTCAGGGTCTTCCCC-ATATCACTAGCCTACCCATCGGGGACATTCACATCATCCTG-----GAGGATATCCAG------CTGTGCTTGCTTTCTGAACACTGACCAGCCTCTGTCACTGCACTGTGTGTGATCCAAATCTGTGGTCGGAT--ATCAGCACAGGGACAGAAGTGGTTGCTTCCAGGGTGGTCAA-GCTCCTTCCCATTGCCCCATCAACCCC----------CTATCTCTTA---AGCTGACACTTTAAAAGTTACCCACATCCTTCAAAGGGGCCCTGATTTGGGCTATCTAGTCGACAAATACACTAGCATCCTGTAGATGCTGTGTGGTGGGCAGCCTCCTGAGAGAAATGCTGATTTCTAATTCTCAAATACCATTTCATGCCACAACTGT-AAAGGCTTGGGAACTTTTC

a score=40347
s chr3           148744054 1390 + 160039680 CCCTTCTGAGATCATCCCCTCCACACACAGTTCTAGT--AAGTTCTACACCCCAGCCTTCTCCAGTCAAAGATTTCCAGACACTCTGGACCTCTTACCTCTCCATCCT----CAGGCCCCAT-TCAGGGCCCTGTAACCTCCATCCATTCTGCCCTCATTCCTTTCCAGTGCTTT-----------------GGGAAATTACCATTCTGT--TATTCGTACATATTCTCTCTTCAGTGGCTCGTAGTATATCTTTTATTCCTGAATCCCCCTAACGTCTTAATATTTTAAGGACCTGGTTAATATTTAAAGAAAAGCTTCTAGTTTCTCTTTCAACAAGCCTAGGGACTGCAAAGAGAAATCcctggcttttcactactattgtctctgaaattagcttcaaaaacaaattttggattccaaaacctgaacattgtatcctttgttcttgtctgggctctgcctccccctgaagcaatggatgtcatgactcaacaggagagatctgtggtgctgagcggaatgtggagaaggaaaagcacaGAGC----AGACTTGAAATACAACTCTGCCTTCTTGGCCTCCattttttttttaaagaaaaaaatttaattCTTAATTCCAAAAGACCAGAGACCAAAA-AGCACTGAGCACACCTGTTCTCTAACATACCTTTGCTATCCAGTGGCCTAATGCTCATAGCAGGAATACAAACATAGGGGCACATCCCTGAACAGGAAAGCTGCCTCATCACCCTGATATACACGGGGTGAGCGAAAATCCCAACTTCAGCAGAAAGAGGGCTTC-CCACTGTGTGCAGTGAGCAAGGTTGTTCTGCAGAGGGGTGAGGGAAAGGGCAATAGGGGAGGCTGATGTGAATCACAGAAGCCAAGGGTACTTTAAAAATCTGTATGACTTCCTGAGGGCC------------ACCATCAAAGACTACCCAGTTGGAGTTTTTAATACCAACCCTACATAATAAGAGCCATTGTTCCAGGCTGCTACAATGCACTAACTGTTATCCT-CCCATTATCTTATTTGCTGTTCTGTGTGAAATGGTTATAGCAAGCCAATTTCCCCTCCGTGACCCTGAGGCTCATTCACTTTCTTAAAACCAAAACGTAGCAGAGGTGGAAAGCAAACACAGTCTCCTCTCTCCCCGCAATGGAAGCTCTGTTCATATTCTTTGTTCTTACAGGGACCAATCCTTCCCTCCCTTTTTCTAAAGTCCAATCCGATCTTGACTCCATGACTTACAAGCATTTGTTC-TGA--------------AAATATCCACAGACTGCCAGTG-TCACTAGCTGGTACAGACGCTGCTATCCTCTGCTGTTGCTGCCACTGCTTGCTTACCTTAAGGTATATGAAGCCATCAAATCTTCATACCGTTATTGTTCATCTATCCTCTGAAGT---TCCCAATGTACGGG
s HiC_scaffold_1 135420768 1390 + 233722169 CCCTCTTCAGGTAATCATCTCCATCCAAAGTTCCAGGCAAAGTATGAGAATCCAGCCC-CTCTATC---AGACTTCCAAAGTCATAGGATCCTCTATCCCCCGGGTGTGGAGCAGGCTCCAGGTCAGGGCTCAATGACCTTGCTTTCTTCTGTCCAGACCACCCCCCAGCAGTTTTCTTATCTCTAGCATATGAGAGCTTACCTTTGTGTCCTGTTCCT-CATACCCTCTGTCCAGTGGCTTTTAATAAAGCTTTCTTCCCTCAGTCCTT-TAATTCCTTATGATTTTAAGGGACTGGTTAATATTTAAAGGAAAGCTTCTGATTTCTCTGTCAATAAGCCTAGATATGGCAAAGTGAATACTTTGGCTCTCTATTACTGTTGTCTCTGAAATTAGCTTCAGGAGTAGGTTTTGGAATTCAAATCC-GAACATTGTCTCCTTTGTTCTTGGCTGGGTTCTGTCTCCCCCTGAAGCAGTGGATACTGTGACTAAACAGGCAGGAACTCTGGTGCCAAAGGGACTAATGGGAATTAAAACTACAGAGCAGAGAGATTCAAAATATTATCATGCCTTCTTGGC--CCGGTTTT--------GAAA------CATTTCTTAATTCCAAAAGATGAGGGAAGGAAACACCACTAGGCACATCTGCTCTCCAGCACACCTCTGCTATGTGATAGCCTAGAGCCTGTCACGGGCACATAAA---AGGAGAACATTCACT-ACAGGTGAGC-GTGTCGT-GCCCTG--ATCCACAGGGTGAGAGAACATTCCAGCCTCAGCAAAAACACAGCTTTGCCTCTGTCTGCAGTAGGCAAGG-----CTGCAATGGAGTGAGGAAGAGGACATCGGGGGAGACTGTCATAAATGACAGAAATccagaatg--ttaaaaaaaaaaaaatctcccttaAGACTGTTCATGATCTGATGATCCAAAATTACCTAGTTATGATTTCTAATACCAATCTTAGATAAGAAGACTCATTTCTCCAGTCTTCTCCTATTAACTAAATGATATCCTGTCCATTATCTGATTTGATTCTCTGGGTGAAAGTTACACAGTAACTCAATTTCTATTTCAAGAACCCAAGACTCA------CTCTTAAAATTGAAAAGGTGTGGTAGAAAGAAGCCAATTCAGGC-CTGCACACCCTGCAAGAGAAAgtccatttatatttttcatccttaCAGGCATCGCTCCTTAACtctttgttcttaaaataaattc----ttttaccACATGGCTTCCAGTTATTTGCTCAcgatgtttatttttctcaaatactGAGGGACTGCAGTTGATCACTGGCCCACCAAGCTCCTCCCAT----TGC--ATACGGCCA-GGCTTGCTTCCCTTGTTGTGTATCAAGTCATC---TCT-----CCTTTATGGTTCATTTGGCCTCTGAAATTACTTCCAATTTAGAGG

a score=25115
s chr3           148746246 1530 + 160039680 agaacaatctattttctattaaaagaa--gaaagTTATATATGGgtgctaattaacttttgctacctaataatcccaaatcatgctggcttacaatagtatttatttatttagcttacaattccatcggtcagcaatttgggttgggcatggctgagagtctctggtttcagctgcactcaattagtgcatctgtggtcacctgccagttcagctgggaactggctcttctaaaatgacctcatgtaga-tgactgcccagccatggtcatggaacagttgagcagaatcccagtggtttatccttagaactcaagcgtcatcatttctgtcgcattct-------------------------------------attaactaaaa--------------------------------------------------------------------caagttgtaaagtcagccaccaatcaaagattccataaagagactccatcttttttgatgagagatgctTA--CTATGTTACAGAATACTACAAATATACCAGACATAAAAACAACTGTAGTTGTTTGCAGCCACACCACCAAAGTATCCATAAATCTACAACTAAAATT-----------------------------------AGTCAGATCCACCAAA------GT-CATGCATATTCATTAAGCCACTTCCAAACCATTTTATTTTCTTGCTAACATGAAATAAACATTTAATGAAAATGAGTCAGTG-----TGTCAAACATCCCTCAGACAAACGGATCT--TGGTAGG-----AGCCACCCATGAAACTTCTTGGGCAGAT-------------------------------------------------------------------GGCAAGATCATTGCAG-----------------------TAGAAAG-----------------------TTTAAGTAATTATGAATACGGAGGTAC-----------------------------------------------------------------------------------------------------------------CTATGGGCTTGCAGAG-------GAAGACCAGATTACATACATACAACTATCCTAGAGGAAACTGGGGGGACCCAGAACCCTAAAAGAATAAGAAAT----GTGGCATTCTCTCTCTGTGGACCAATAACACTGAATCTATACCTCCCAGACCTT-----------------------TTGCTTCACTGACAGAGCTCGTTTGCCATGAGTGGTATATTTCATGCTAGGGAATATTGGCAAGGTAC--TAAAATGATTCTCCCCACCAAACCCCTGCTGTTACCTGAATGTAACGATCTCAGGTATATTTTTGTATATTTTTTTGTTTTGTTTTTAGTCAACTATTAAATATTAGTCAAAGCTGCTTGCTTTCTGGCTCTAAAACGCCCAACCACTCAGTGTGTTTTTCTCGTGCCCGTTCTTCTATTTTTAGCGCTTAGCATCCCAGAACACATTTGTTCTCAATATGGAGATGTGACTCCCACTTTATTTGACTCAAGCAATTAAGTGTGCATCCAATATTTGAAGTCTCAGTACTAATCAAATATTCAT----GCAATGATTTATCAAGGACCAGTTATAGCTTAGAAGTATTATATAATGGTTAACAAGACAACCAAACCCCTCTGTTTTCTTCACTCTTTATGTCTATAGAAAG-AGACTGATATTAAAAAAACAATTACAAAGATGAC-----GTTAAAATTATATGTAATCCCAATGAAGAACTATTTAACAAAATATGAAAACAACACAAGGAACATTTAATTAGTCATATGACAGCTGAGCAGATATTAACCCCAAATGAA-TTGTAGAGTTCCAGGGGAAGGCTTCTATGCTGAGGAC
s HiC_scaffold_1 135422343 1904 + 233722169 AAAATATCTTATCAGCtacttaataaatgaaaaattacatatCAGTGACAATTAACTTTTGCTACATAAGAATCCCAAAACGCAATGACTTAAAACagcatttattta----gcttataattCTGCAGGTTAGCAAGGTGTACTGGGCATAGCTGGGGAATGCCGTTCTCAGATGGGCTTAATCCATGTAG--GTTGTCACCTGCCAGATCAGCTGGGAGCTAGTTGTTCCAAAATCATCTCAGGTAGAATGGCTGTCCAGACCTGTTCACAAAGCCATGGAGCAGAATCTCAA--GTCTGAGCTTAGAACTGGCGTGCTATCACTTCTGTCACTTCCTGGAGGCTATCGGTGATGACAAACATTTTAAACCTTTCAGTAGTTAAAAGAAACACacgaaaaacaaaggaaaaaacagcaCCTCTGTGGCACTCCTGCCACAGGTTTCCACCACACCAAATTCCAGGGCCAGCCAAGATTTAAAGATTGGGTAAAGAGATTGCATCTTAGGAGGGCAGATATCATAAAATCACATTGCAGAGAAC-ACAAATACAG-AGAAATCTGAACAACTGTAGGTATTTTT--CTA----ATCAATGTGAGGAAGAACTTATGACTGAAATTGTCCCAATAATGAAAGTACATTGTTCAAACAATGCAGCCTAATCTGCCAAGCATCAGGTACATGAAGATACATTTACCCATTTTCTAACCAATGTGTTGTCTTGGTAA-ATGAAACAG-CATTTAAC--AAATGATTCAGTTAAATTTGCCAAACACTTCTCAG------GTATCTAATGTTAGGCATTGAGCTAGTCATAGAACTTTATGGGCAAATAAGAAAATCCCATTtgtagctggacatggtggcacacgccgGTAATCTCacctatttgggaggctgagacaagaaggctgcaagttagaggccaacctgggcaagtCAGGAAGACTCTGTTtcacaatagaattttttttaaaaattttaaatcccaAGATGCAACTCAATGATAAAGCACTTTGTCTAATATACACAagacactgggttcaatccctagtagcatgggaagagaaaataagattttaatcTAGTTGaagaaatgaataagtaaatCTATGAAATTATAGAGATTATAAGAAGGGCATGTCACTTAGA-GCAAGTGTCCCAGTGAAGGTCACAGAGA-----AAACCCAAAAGGGTGAGGAATCTATATAGCACTGTATGTGCGCATATACAGAACACTGAGT-GACAGTCCCCGGTCTTTgtcaggagattaaaaaaaaatttttttttcactaa--gatTTGGATTGCCACGAATAGAAGATCTGATACTAGGGACTTTTAATAATGTACATTAAACTGACTCTGCCAACCAT-CCCTTTCTATTACCCATATACATTGATCCCAGGTACATCGCGGT-----------CTTTGCTCTCTGCC------TAAATCCTCTCCATCACTGCTTATCCTCTGTGTCTGGCTGTCCTCACCCCTCAGTGTATGTTCAACACCTGAGTTCCTCTCCTTGCAGCATTCGGAA-CCCACAGCTATTTCAGTCTCAGCACTGAGATGTAGGTTCCACTTCAGTGGCCTCC--CAAGCAAGTGTGCATCCCATTTTTGAAATCCCAGGGCTAATCACACATTCATTCATACAATTATTTTTCAAGGACTGGCTGCAGCCTAGAACTACTATATAATGCTAAACAAGATAATTATA-ACCTCTATTCCCAGGACTCTTATGATCTGTAGGAAGAAGATGGATATTAAAGCAGGAATTACATACCTAACTTTCAATTAGGGTtgtatgttcttttaa-----aaatatgtaatatgtcAC-AGAACAGAACTAGAAACATTTAATTAGTTCCTTGACATATTagctaaaattaaatgtaaaagaagtTGGGCAGACCCAGAGAAAACTTCCTGGGCTAAGGGC

a score=16357
s chr3           148749467 628 + 160039680 TCAAACTTCTGGCTTCCCTGAGGCTCACATATTTGGCATTGTTAGAATTGTTTTTCTTCCCCTTCTGCTCCTATAGTCTCTCTAGCAAATAATTAATTTAAAATCATTGTTCTCTACTTCCAGATACCTTGGGCTGCCCCTTCACAAGCAAGCAGTGAGGTCACTTTGTCCGAAGCT-GATGGCCACTATGGCACACCCGTTGTTATCCATGTCTCAGTCCATTGAATT---CAGCATCATTTTGCCGCACTTACTCTGCATGGGACCCTTTGGTCCATACTGTTCAGTTCACCTGGATTTAAAGCA--------ATCTGTCCAAACTCTTGGG-TCAAAAGTATTCAGGGCCAACCTATTCCCTTGTGGTCACTTTTTTCTGTAAGTCGATACAATGTATCATCAATGACCAGGGTTCAAATTGTAGGGCAGAATTGAAACACCTTCCATTTCAGGAGCTTAGCTCCCACCCTGGGTCTTGTTA-TTTCAAAACTTCAGCTAAAAGTTGCCTGGAGGTGACTGAATTTTCTCCGTCCCTGGGGAAGCTG-------CTGTGAATGACTGTTCACAATGCTTTTTCGGAAAGTCGCCAAGTTCGGTTTTTGCAACATAAGTGATTATGAGTTTAAATGCATGCCAGGGG
s HiC_scaffold_1 135424502 609 + 233722169 TCAATCTTCTGACTTCTTTGAGGTTTAC-TATTC-----------CAtcatattttttctccttt--atactaTGCTCTGTCTGGCAAAGAATTATCATACAACTGTCACTCTTTCT----------CTTACGCCGTCCCTTCCCCAACCAGCAGTAAAATTACCGCATTCTACACTTAACAGCCACTGTGAG-----CTTTGCTAGC-ATAGCACAGGCCTTCACCCTAAGCAGCATTTTTTTCCTACACTTTCTAGGCGGGCAACAGCTTGATCTGCGCTATTTA-----CCTGaattaagaaaacaagaaaaatctgtGCAAACTTTTGGGGTTAACAGT-TTCGAGATTACTCTCTTTCTTAGGAGGCCACATTCTCTGGGGAACAAGGCCACCTATTATCAGTTATCAGAGTTGAAAATGTGATGTTGAATTAAAACACTTTGCATTCCAGAAGCTCAGTTCCTACCCTGGGTTCtgttatttttaagtctttagCTAAAA-TTTCCCGGAGGTGACTGAGTTCTCTGAGTCCCCGGGGAGGAGGGGGAAGCGTAGGAATGACTTCTCTCAATA-GTTTCCTGAGGGTTGCCAAGTTC-GCTTTTGCAACCTAAGTG-TTCTGAGCCGAAATGCATGCCAGGGG

a score=71438
s chr3           148757314 3131 + 160039680 GGGCCATTCAAATTAAAGGCAGGAATGAAAGTTTGAAATGCGAAGCTTAAAAAGAAATAGACAGACACACATGGAAAAGAAAGAACAGAGTCTAAAACAAAGCTTCGGTTCTGACTTGCTTAGCTTCACTCACTCCTTAGAGGACCATAGCTTGGGTTCTAATCTCACCCTAAGCAGAAGATCCCAAAGCAAGCTGTG-----------AGCCGCGTCCAGTCCCGGTTCTGTCAG------AGAGGC--------------TCCATGCAGACCC------------------------GTCGTCCCCTGCTTTGAGCTTAACTCACATCAAACCAGCTAGTATAGCAGCACAGGAAATAACTCACACTCTGT-TTTCCAATGAACTAATGGCGGTGCATTGATTTATGCCGTCAATTACAAGTGTGAGCAACAGCCAAACATGCAAGTTACTTCAGGAAAGAAAAAAAGAAAATTCCTCAGGTCACTGAAGTGGCAATTAGCATGTATTGTGAAGAGAATGAAGAAGAGAGGAGA---GAGAGGAGAAAGGGCTGATGAGGTGAATTGCCTGTAATTATCCATAAACATTTTCTCCTCTTCTTTTGATGCCATAAGACCCCCCGCAGCTCCAAAATAAGCTAAGCCTGAGTTTTGTTTCTCTCTTGCAAGTAGGAAGGCAATAGCCACCGTGGAAGCATGTTCTTAATCAAATGTATTAAACTCCTGGCTGCTCTTCTTCCTTGGAAATTGCCTGGGCTCATTATTACCATGGGGAAGAGAAGTCTAGTCACCATTTAACCCACATCTTGGTAAATTAAAATATTAATTACAAAATACGTTATTTTTATCTGATATGGCAAGCTATTAGTTACTGTGGCTGGATAAAAGAG-----CACCCTGGGCTAAAGTGAGTCTCCTAACAAAGCTCTGAGAACATCTCTCTCGTTCCTGGAAATCAAATCAGGACATGACATGTGACATTTTTGAGAGCCATTCGAATAAATTAGATAGCAACATCTTTTATCTTCTATTTTATCTTTTTCCTCTGAGATAAGTGCGCACTCACGGTGGCTGCATCGGCATGCTAAAACCATGTGACCCTCTATGTTCATCCCTTGGATGTTCCCATGTGACCCTCTATGTTCGTCCCTTGGCTGTCCCCGGGACTGTGGCCAATGCTGGGCAGAGCTGAAAGGGGAAGACGGAGTGGTCTCTGTTCCCTTTCATTTCTGCCTCACGATTCAGCAATCGATCTTA----CGACCATAGACACAAATGCTCCATCTCTGGGAAAAAGGCAAATAAAGCCAGAGAATCCACGTCAGAACCCTCTAAATCTCTCATTGTCTGCTTCTTCAAAGTCCCAAATCACCAGCAAGGTAGTGAGTGAGGCTGTGAGAGAAAAGGCAGG-CTGCTAGCCAACAAGCCCACTCAGCA---GAAGGTTACCTGGTAGCAGGG------TACTTG-CAGTCAGCTCAG-ACGATGGAGAGCTGAGGCTTTTTCCTGCTGGTGA-GGTATCGGCAT----TAACTGTA--------------------------GCTGCCATCCCTGTTGTAAAATGCTTCCTGCTTTGCCCACTGCTTGTGTGAGA-------------CTTGTCCCCTCATAACTGGAAAGGTTCTCAGGG-ACTCAGTCACTA----GTTTCAGAAAGAGCTGGAATGTTGAAAACTCTAGTACCAATACCATTTAGGAAAGATCCTCTCTGTACTAAGTACTTCAC-------ATTCTC----ATTATTCTGATA--CTCAGCACATAGATGCTTTCCCCTTGCTCCATCATGTTAATGAAGTACAATCAGAGGCTCGGGAAGATGAAGCAGCCGGAATAAGTAGCCACTGCTATAGGGAGAATCTAAACCCATTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgtgtgcacatttgtatgtgtgcatgtgtgtgcatgtatgtgtgcatgtgtgtatgtgcatgtgtgtatgtgcatgtgtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTCACAAGGGCACATGTGTAAATCTTTGATCTTGCTTCTGTCAGCTTCTAACTTTTAAGGTGATGGGAATTTTTGAGGTGAGCAGAATATAGGAGTTTTTAAAACAGA-ATAGAGTATTGAAATTAGATAAAAGGA--CAGCACCCTAAAAGTCGCATGTCCTCAGGAAAGATACCCCAACCTTTCCAGGTTGCTAGATAGAAGTGATAATGACTGGTCTTTTTATTCTCCCACTAAACATCACCTCCTCCCCTGAAAAAGACCTTTTTAATCCATTTTTGTGTTTATCTCTCCAGGAACTCCACAGAGCACAAGAAAGCTG-------ACAACATAGTCTTCCTTCTTTCATATGCACATACTTTTACCCTCAGCTACTTAAGAAGT-GACTCATGGGTCTCTACACTTCACAGTCACGGGGACACTGTGGA--GCCTGGCA-------AGGATCCATGGCCTAACTCCATAG----GCGAAGAGACCTGACTTCAGTACCCAAGCCTCAGACTCTTCATATGAAAAAGCAGGTCATGGCAATGCCTTGTTCT-CGGAATGTCAGGGACTTGCAGAAAGTTTTGTGTGGATG-CGATTAGGGAAAATAGCATCCACAATCCTCTGATTTTACTAGgtggaatagaatccctccaaggcgttctgtagaacaattcccaggccaggttagatt-ggaaatgttaactcctcaagctagctcttgcaaacacacagtgtgttttagcatataaaag--tctccccagca-----gagaaatctgttttaatatatttaa----------cATGAAGCAC-CCTTAGGGATTAGAGTTCTGAAGAACTCCCCACAGGAATATGAAGAACCTGAATGGAGGAGAGAGAACACTGGTGCATTTAGCGCCACAGGCTTCACT-ATAAACGTTACAGAG-AAGAAAGGGGATGTAGAGAAATTATGCTCTTCAGAACCTAAAGCCTTTCATGATTTGGAGCTCAGGTTCAGAGACTCAGGTCAGTAAGGAGAATAGCCTTGAACACAGGGCTCAGCTCTGACATTTTAGCTTCTGAGGACATGTGCC----TGAGAATGAGGCAAGGAAGACCAAGCTCAGCCTTATTTACTCTTGAA-CTCCAGCATCTCAGAGTGAAAAACACTCTTACCAGTATCCAGGATA-TGGTAGAGTGAGAAAATGAAGGCCCATCTTGGAAGGGAACGGCACAGAAGGG
s HiC_scaffold_1 135425107 2926 + 233722169 GGGGTattcaaatgaaaggaaaacGGGGAAATTCTGAATGGAAAGTTTCAACCTGAGTAGAGAAA-GCATAAGGAAAAGTCATAA---AGTGGAAAAGGAAGCTTAGA-----------------------------------------------ATTCTGATCTCATCCTAAGCGGGGGA-CATTCGGCAGGCTGTGCCTGATTTTACGTCTGCCTCCGAGCCC--TTGTGGCAACCTTTCAGAGGCGGAATGAGTTCATGTGCATAAAGAGCCCAGTACACCGTCGGTGCTCAGTTTGTAGTTTCTTCCCTTTAGCTCTCTTAATACCTAACTACCCAGCAAGATAAGACAAGGAGTAACtcactttctatatttttaatgaactaatgGAAATCCATTGATTTATGCAGTCAATTATAAGTGTGAGCAACGGCCAAATAGGCAAGttacttcaggaaaaaaaa---------ttctcaggtcACTGAAGTGGCAATTAGCAAATATTGTggggagaaggaggggaagaggaaaaaggaggagaaaaagggctGATGAGGCAAATTGCCTTTAATTATCCTTAaacattttctcctcttcttttgaTGCCATAAGACCCCCTGcagttccaaaataaaataagcctgagttttgttttgctcttttaaatGGGAACATAATAGCCACTGTGGAAACATGTTCTTAATCAAAGGTATTAAACTCCTGGCTGCTCTTCTTCGTTTGAAATTGCCTGGGTTCATTATTATCAAGGGGAAGAGAAGTCTAGTCACCATTTAACTCCCTTCttagtaaattaaaatattaattacaaaATACGTTATTTTTATCTTATACCTTCAACTATTAGTTACCGTGGCTGGAGAAAAGGAGGTTTCTTTCCACACTGAAGTCACGCTCCTAACGAAGCATCCACAGTTACTCTCTAGTTCCTGGAAATCAAATCAGTGCATGAAATGCTGC-TTTTTGAGAGCCATCTGAATAAATGAGATAGCaacttcatttgttttctgt------------ctcgGAGATAAGTGTGCAATTAT-GTCTCAGTGTCCATGCGCTCCAGCCATGTGACCAT--------------------------TCTGACAC----TGGTCATTTCCTAAGCG-----AGGGCCGCAGCCAATGCCAGGCAGAG-TGGACGAGGAAAAAAgaat------ctttccctttcatttccacCACACAATGCAGTCATCGATCTTATGCCTGCCCGTAGACACAAATGCTCAATCTCTGGGAAAGAGGTGAATAAAGCCACCGAATAGACAGAAGAGCCAACTAAAACCCTCGTAGTCTGCTTCTTCAAAGACTCAAATTAGCAGCCAGGT----ATTGAGGTGACAGGAGAAAACCCAGGACTGTT--CCTTGAAAGCCACTAAACACATGCAGATTACCTGGAACCCGGGATTTTTTAGCTGTTAGTCATCACAGAACAATCTGAAGCTAGAGCCACTT-TTGCAGGCGACAGTTACAGAGTAACATACCTTTAGGGGGACTTTGGGAGAGGGTCTATATGCCGTTATCCTCCGTGTAAaatgctttctgtttctcctaCTCATTGGCTGATATCCGCAATTCGATTTTTTCTCCTCACACTTGGCAGGATACTCAGGGTAAGAGGtcattattggatttcaaaagcagatAAGGAGGT-AATACCTTAAAGCTCACACCATTTATTAAGTGCCTGCTAGGTAGTAAGCATGTTAcgtatattattttcttcaattgTCCCAATAATCTTGGGATGTAGACATTTTTC----AAACCACCACATTAATCGAGTGAAAACTGGGTCTTAGGAGGATTAAGCAATTGG----------CAGTGATACAGGGCAGACCTAGATCCA----------------------GGTGTCTGATTGCA-------------------------------------------------------------------------GAGCCCTTGCTCTTAC-TGTGTCTGTCAAGTTCTGACTTTGGGTGTGTCTG-GGGTGTAGG----------AGAGGAGGTGCTTAGGCCTTTGA---------------------------------------------AAAAAGAGCACAAT-------------AAACGGAGGTAAAGGATTG---TCAGGGAGAAAGAAGAATCATCCCTAGA----TACATCCTGTAAATAGAGACCC---CTCTGCCAGGTTGCCAGATGGCAG------------------TTCATCCCCCACTAAGCATGG-------CCCAAACTAAGCTTCATTTCAGGTCTTTTCATATACATCTCAC--AGAACTGCATAAAACCCCAGGCCCCGGTGGATGTGTAATGTAGTTTTCATTCTTCTACATGCACTTTTCTATATCTTTAGTGAATTAAAGGGCAAACTCATGGCTCTCAACCCAACAAAGCCACTGGGAGACAGGCGACTGCAAGGCAGTGTCACAGGTGCTACTGTCCATCCCTGGAGCTTAGGGAAGTGACCTAACCC-----TCTCTGCCTCAGACTGCT-GTCTAAAGAAGGAGGTTACTCATGAGCCTCCTTCTGCAGGA----AAGAGCCCACAGAAGGTGTTGAGTGGGTGTTGAATGGATGTAATGAAGT--GCTATCATTTGATTTAGCTGCAT-AAATAGCATTCCTCCAAGGTGTTCTGCAAAACGGTTTCCAAGCCCtacaaatttagaaaatgttAGCTTCT-------GCTCTGGCAGACACACAGTGTACCTTAGCACCTAAAAGACTCTCCTCAACCCTCATAATAAAcctgttttaatatatttaacatgATATTCCATGAAGCACACACTAGGAGTGAGCGTTCAAAAGAACTCCCTCCAGGAATACT--GAACCACAA--AAGTAAAGTGAATGTTAGTATATTTATCTGCACTGCATTTTCTCACATATGCTACAGATCAAAAAAAGGGATGCATA-AAATTTCATACTTTGGAATCAGAACACTTATTTGACTCACAACTTAACTT----------GGTCACTTGGTAG-ATTGCGTTGAA--------TGAGC----------TAGCCTCTGATTCCATGTGCCATGTTGAAATATCTGCCCTGGAGCTGAGGATTAGCCTTACTTGTCTTTAAATTTCCAACACCTCAGAGCCCATAAC---TTTATCAGTGCTcagaatatttatatattgaaagaATGAAGGCCTGGCCCTGACATAGACCACACAGAATGG

a score=32066
s chr3           148761126 2366 + 160039680 tttattttaaaaaataatataaCTTGTATACATCTGCTCGTATTTATCATATAAAAATAACATTGGCTTCTAAACCTACTGAAGTTGAATCTACTCATATACATTTGTTTTTGTTTTATTTACCTTTGTTTTAGCTAAAATGATCATTTGGCCTATCTAGAATGTTCACTGTATTTAAAGTGAGGAAACATTTTCATGACAATCTTTTTGAGTGTTTACCATAGAG-TTAGTTCTCATTAGGTTCCATATGTTTATCCTGGGT-AACCTCCATTTTGGATCCTAATGCTAACTACAAAGAGCAGCAGAAAGGGTTGGGTTGATagccaggtgtggggcacatgcctataaccccagcagtctcaaagctgaggctggagaattggaagttctagaagagataaagctacgtagtgacactctgtctcaaaaagaaaaCAGTGCTTTTCTAAAGGTCATGATGGATACTGGAGGGTAAGGTC-AAGTCATGAGCAATAGCCACCTTTTTGGGGTAGGTTCCCTGTGATCCTGATGATGCTGTCTTTCCATTATCTAAAAGACAC-TTGTCCCATAGCCCTGCCCAGCCTACAGTTCTTCAATAAATGAGACTGGCAAAGGATTGAGCTATAACCCTGTCCCTTCTCAAATTAGACTTTGGCACATTGCAAAATCTCTTCAGCAAAGCCAGATGTA-CCTTCTGGCCACTTAGGTAACAAATCACCTCTTTTCTAAGCTGATACACTGTTTTTCTATTTTGGACACAGTATCACCATAAGTGCTAAGTGTTTTCAAATCACAGG---TAGAGAATTTTCTTTCT----CACCTTGTCTCCTGTTGATATGAATTCAGCCAGGACTCCCTG--TGTTC----------TAGGCATTGTGATAAACTATTAGCAGTACAAACCATGGGCCTTTGCAT-CAAGAATCTCACCAATTGTGGTAGAAAAGAAACAATTAAGCAGGCAACTGGATATAGAAAGTCATACCAAACTGGTCACTACCCAGGACTTAAAGAAATCACAGGGAGA-----TCCTATCAGGGTGGGAAGCAGAGAAAAGAACCCCTCAGCAA--------------TCACATTAGTTAATtgttacagtttaagctgagtc----atgttaaaataa--agtcaacagctatccctcagtacagcagcattgggtctaacttggcaataag--gccttgatagaactaaccaaattcaaatggggtcataagggaacactttcattcagtg-----tgaccaatgtctacat---------------------------------------caatatctccagcaatcaaagatcatgtgaagtcacacaagaaggaaaccttatgaagatggaggactagaaagtcacgtgtacaactctcagaatcctagaggtcaccagcaagctaacggaagctgggagaaccacagacagttt--------ttccttggacagagggaccaagtcctgaagatgtcttagcctatgtctagcctGCTGAGTTCC---------------------------------------CCAGCATGTTATGCAGACCCGTGGACTCAAGGCTCATTCCTAGGTTCTTCCT----GCAGCAAACG--AGCTGTCCACTGTTATCACACAGCCTGTGGAGTCCCTGGTGCATCCACTGTGAGAAGTTTCTAGACTTGGTATTCTCTACACATCAGCTGATAAGCCACAAACACTGCACTTCCTCCACAGTCAGTGGCTTGGAGCATCAAAGCGTGTGTC---ACACCACATCAAAAGTCAGGAAGCG-------------------------CTAGCTGAAAGGAGACACCCAGACCAATGCGGGAGGCAAGCCATGTGCTGTCTGTCTCAAGAA--TCCTCTGAAAATAA-----ATATCAATGGGCTTCCAGTGAAGTCCTGGAATGCCCTTTCCTGTTCCATATCTGCCCTAGCCAGAAATATAAGGTGCTACGTCCGTTTACTCTGAAG--TTGTCGGCAACCATCAGGAGTCACGACTCAAGTGGAAGGAAGTGAAGCT-CTCAGACCCCAAAAACCACTTTGT----------AAAGATG----GTGACAGCAAGCACCCTGGGCCACCAAAAAATCATGTTCTCTTAGGGATATGCTAAAAAAGTAACAGTTTCAATCCTCTTTGAAAT-ATCCCCACACCATGGAAGACACTCTT----------AACAGACTT-CCGTGAGGGCCAGCCTCGTGGATATCCTGCCAGACACTTGAATGGAGGAAAG--GAACTGATTCACCA----GGGTAATTGTGGGTGTGG-GAGAGAATGGAGAG---------TGAATGGGGCTG----------AGAGGAGGA-----------CTAGAAAGGCCTGT------TACAAGTCTCACTGCTCCCTGGAGATCGAGAGCTGCTGCATTAATGAGATGAACCACATTA-GGAAACAAAACCCAGGGCAGGT---AATGATGAGCCAAAATCAAATCCCAGGACTCTTTGTCTAGTAGCTCAGTTTCTGAGCCAGCCT---CTGGAGCAGCAAGATCGGGttcctcttcctct
s HiC_scaffold_1 135429630 2348 + 233722169 tcttttttataaagtaGTTTTCCTTTTATGCATCTGGCTTTATTTAccagagaaaaaagacatttgCAACTAAACTTACTGAAATTAAATAGTCTCATTCAAATGAGTTTGtctctt-----cctttgtttt-gttaGCA-GACCAGTTTGCCAGTTCACTATGTTTATAATGTGTGATGTAGGTAATAGCTTTCATGAAAATCTT---AAACACTTACCCTAAAAATTAATCCTCATCACATCTCATGTGTTTACATGATGTCAAACACCATCTTT-ATTTTAAAGCTCACTTAAAAGCACATTAGAAGGTAAGAGATTG---------------------------------------------------GCTGGAG-------------------------------------------GTCTCA-----------------------------------------GAGAGTCCAGTCTGGGTCAGGAATAGAAGCCACCTGCTTGGACTGAGTGCCCTG-GACCCTACT----------------CATCTCAGTGACATGCCTTCCCACA-------CCATCCACCACTGctcttat---------------------------------------ttctcagatttgATTTTCACTCATGGCAAATTCTCTTGACCAAA-CTAAATGGAGCCACTTGGTTGTTTTTAGATCAAATAATCTATATAATAAATCTAaagtttgtttccttattttgcaTGAACTCTCACTGGAAATGCAGCACATTTTGAAATTACAGAGGTTgaaacattttctatttaaatcaCTTTATATCCTGCATATCTGAGTTGAGTGAGGATTCCCTGACTGTCCCCCTGCCTGCTCAGCACAGTGATAACAGCTCGGTACTCCAATCA--GGGCTGTTGCCTTCAAGAAGTTTCCCACTTATGGAAGAGAA-------TTAAGCAGGTGACACAGTAGGTAAAATCCCATCGAAGGGGTAAGTACCACGTGCTAAAGAAACTAATGGACAGAGTATTTAATCTCAGTTTGGGAAACACAAAGATGG----CTCAGAAACTGAGGCCTTAAGGTAACATTAGCCAATTTTTGTGGGATGAATTGGGTCCTCCATGgcgaacaaacaagcaaacaaaaattccaCA----------ATGAGGTCGCAGTCCTCAATATGCAGACCTCATGGGGGTAATTAACTTAAAATTGGGCCATTAGAGTACACCCTTATACAGTGACCAGTGACTGATGTccttatgcaaaaaaaaaaaaaaaaaaaaaaagagggacttGGATTTAAAGACACGTGCAAAGGATAATGATGTCAGGACCCACAGGAAG----CCATGTGGAAGTAAAGAACTGGAAGGATGCATTCGCAAACCAAGGAA------GGATTGCCAGCAAACCCacagaagctggaagaagaa-agagagattcCCACTCATTCTGCATTCAGAGGGAACAAGACCCGCTGATGCCTTGATCT-----TGGCTTTCTGGGCTCCAGAAATGCAAGGCAGTGAATTCCTGATGCTTTACACTACCCAGTATTTTGTGCAGGTACA-GCACTCA--GCTCTCTCGCACGCTCGTTCTCTGTGTACCATATTTTGCTTGCCCCTTGACATCCCAGAATCTATGCAAGCCCTG----CTCTGAAGGGAGAAGGGCCTGGATATTGTATGTTCTGTACATCAGCTGATAAGCTGTAAGCCCTGCGTTTCCTCTGCAGCCAGCAGTTTGAAGCATCAAAGCTTCCATTTCAACACCACATCAAAACTCAGGAAGCTTTCAACTTCATCCAAACACCCAGTCCTTGTGGAGAGAAGACACTGGGACT----CTAGAGACCAGCAGTGCA----CTGTCTCAAGGAACCCCTCTGAAAATAAACATGACATAAATGGACCTTTACTTACATCTGAGAATGTCCTTTCCTGTTTCAGGTTTCATCTAGCCAAAAAAGCCAGAAGCTATGTCAGTTTCACCTGAGGGAGGGCAGGAATCCACCATGAGTCCCAAGACCAGTGGAGACAAATGGTGATACTCAGTTCACAGCAGCAACATTGTCTCCTCTGACAAAGACACAATGTTTAAGAGAGCACCCTGGGCCAATCAAA---CACATTTTCCTGGGATGGAGCT---AAATTAGCAGCTTCTATTCCTTTTGGAACAATCTCCACattaaagaaagcattttttttttttttaaacagacttCCCATAAAGTCCAGCCTGATGTATTTCCTGCCAGACACTTGAATGGAGAATAGCTCATCTGATCCACCAAATTGGGGAAGTCTGGCGGTGGAGAAAGGCTTCAAAGTACTTTTGCTGAATGGAActgtgaaacagaaagaaaaggaagagatagcCCCCGGGAAGGTGTGCAGGCAGCCCGGGCTCCCTTGTTCCCTGGATGTAGGTGGATGCCACCGTAATGAGAGGAGCTGCCTCCTGGAAACGCAGCAGAGAGAGAGTGCCAACAAAGACTCAAGAGC---TGCCTGG---CTTCCTCTAG-----CAGTTCCTCGATGAGTGTGTGCTGGCGCAGAGGTGTCAGGTTTCAATTTCTTT

a score=54659
s chr3           148764084 3312 + 160039680 ACTGAGGCTAAGGAGAACTAAGGATGACCGTCGTGCTCCTGGA---------AAGTTCATACAGTGTCCAAGGAGCAGCGAACTCTGTTTCAGTTACACTGTGGTGTTTC-CTCAGAGTCAGCGA-ATTCCCTGTCCCCAGGTCTCCTAGA--GGGACCATCCTT--------CTCTCGTTCTCAGAAGTCTGC-TCAAT----TTGTGAGGCACTTGCGACCACTTTATTGTGGTTTATGGCCAGCTTTCTCTGAAGGCAACA-TCTTCACCTAACTATCTTTGTGGATCCCCAGGTCACAACCTAGAGCACATACACACTCACCATTAATTATTCTGTAAATGAATGACTAGACTTGAGCCACCAAAACACTGTTGCCCCAAACATGGTGTTTGGAGGGACTATTTCTTCTCCTGGAAGCAATGCCAGTTTTTCTCCTGCCTGGGATGGTTAAGAACACAACTGTGTTGACCTCTCTACtttatgcagttcagtgatccaatccaggcctgtgcatggtaggctgctactttatcactggccacacccctagcccGAGTCCTCTTTCTTCTGT-AAGTCTTAGTTAGAAGCTACAGTAAGACTAGGCATATACCCTATATGCCTATGTATATATGCAACTCTATGCCTTAGAACACAGAAAATAGCTAACTTGGGCAAGCAACTTGCA---CATTATTTTACAGACTTAAAGGAAGGACACTGGGGTTTTACAGTGCTTGAT-CTGTACAGAGGTTGCCACTT-CATGCTATAAGAATATATCTGTGCAAACTG--AATGCTACACATCATTTCTAGTCTTTACTTACATTTGTTCTTTATAATACACAATGAACTCTTTTATAATTACAGCACCCTCACTAACAATAGTTTGTCTTTAAGAATTTCAAACACTTCGTAGACATCCCCATAGGCC-ATTTACCACCCTTCTCACCCGGGGAATTTGAGGCTGCAATCTCCCTGCAGAAGTGCGAAGGAAACACCAACTGGAGCTTGACCTCAAAAAGCAATGCATCCGAGCTACCCAGAAGTTAACACGGGGATTTCAGTAGAAGGCCGAGGCAGTCTGGTTTCTG-CCAACACACGATTTCTTAGGCAA-ACCTGCAAAATCTTTGCTAACAAGAAGACTATGCCCAAACTGCACAATTTATAGTGGAAAATTGTATTGCAAGGACTCAAAATAGATGAGGTATTGGGACTATACTTTAGAATATCAATGACAGAGCAAACTCCTGTCTTGATCATGTCATCAACCCACATTGAAACCATAGCAAATGTCCTAGAAAAGAAAACGATGATTTGAAGAGTCTCTGGGTAAAGAAAGATAAAATTTGGCTTGGGAAGTCTGAAAACAAAGTTGATCACA--TAAGCTTCTTGGTACTTGTAGAAATGTGTACAGGAAGCCAAAATACAGG-GTTCAGTGTTCCCATCTCAAGACCTTCACTTCCACCCAGGAAGAGGAAATGAGTATCCGAGAAGCACAGCCGGAACCACGTGTCTT---------------------ATCATCCC---------------------------------------------CTCCCGTAAGAGTCAAGCATCA------------------TGCAAGGGGAGAGATT-----------------------------------------TTTG----------CTCTGT-----------------------------------------------------------------------TTTAGAGTTCTACATATTGAAAAAGGAGAGGAGCAGAGAGCGGAAAAAGAAGACAGGATTAGGGACCAGCCCATCCATAATGAGACTctaactcactgtgtaaactcaaataaactgcctcacccactgaaaccttacttttcctcattaaaaatagataaaaataataagagcaacagtatttacctggtggctgtgaagatttgaagtcatgaaggaaaagcagctaacgtgtttcctggtaaataccagatgttcagtggaaggcagctattattACAGCTAGAATATTAAATTACATTTGCCATCAGCATAGACTTGCAGAAAATGAGATTCAGTTGTATTTATGCCCAAAAGCAATTTGTCCCCTATTAAAAAGATTTCAAATGTCAGCAAACAAAAGGGGAGAAAAGTCCTATTTTTTATGTAACAGAAAATGA-TACATAAAAGCTAAGTGGCTGAAAGGTTAAAACTACAT----TAAAATGAATAAATCAATTGCCAAGTGCAAGCTGTTGATATTCTGTCCTCTATAGTTTTGTTCTA------------TTTTACCTAGAAAAATATAATAAAGATTAGGA---------------------------------------------------------------------------------AAgaggaggaggaggaggaggagga-----ggaggaggaggaggaggagAGAGAGAGAATAACCCATAGTAGATAAGAAATCTGGGAAGAGGTGAATGAAGGCATTAGAGTGGAGT-----GTAGTAAAATG--TTAAAGACAATTTTGCAGAAAAAAAATGAGAGGCAAGAGCTTATTTAAATCTTATGTTTTATATATTCTTATATTTTCCTATATTGAAATACCGTGATACTAGATAAAATATTAAAGCGTTTTAAAGATGCCATTAAGGAGTCCATAGAAATAATAGCAAAGTAGTAGGGCTCAAGTAAAGTTCAGGCCACATTTGGTCTTTGCTTTGAGAAATCTTGTTAAGTGTGGAAATTTTAAGTTCCATCTTTGACAAATACAGGACAACTAGGAGACAGAAGACTCAACCTAAAGTTGTCCCAAGTATAGTGTCTAGTAGAAGATATGTATGTTGAGTCACTATGAAAAGTGAACACCTTCACTGTTAGGAGAAAACAAGAAATAAAACATTGTGTGTCAGT---------TAAAGAGA--TTTAAGACATGATCTTGATTCTAGATTGATTAGAGAAGAAATGATCCC---AGACAGTAAATATAGCTAGCCCACAGATAGGTGATTGACTAAATATGTGTTCTTTATA-GGACAGAAAGTCCAGAAGAAAGTAATTTCCTTGAATAT---ATTTCAGTGTTGGCAATATCAA-GGGCAAGTGTCAGAAGAAATAGGAGTCTTCTTTATAGGAATTAAAATTTAACGCAGTCCTTGGAGAAT-------ATTATGGAATGTATAAGGAAAATATGCCACCCACTGTGGAAAAAAATCACAAAATACATCAAAAGAGAAGATACTATGAATAAGAATCAAGCAAAACGACATAAATAAAATATACCCAAAAGGACCTCATAAGCTCACAGCCATACACTGAATGCGAAATGAACCACATCGATCAGT----GCAAATTTCAAAAGCATGAACATAAGATCATTGTAATCGTCCAAGTACAGGATTGAACATACATATTGCAAAAAATGAACCAAAATAGAATTCATAGAAATTGAAAATTACAATTATTTAAGTTAAAAAAA-CAATAGAAAAGATAA-TGTTACTGAGAAAATTAGCCAGTGAGAGGATAAATGTTTAA-AAACTATGAAGAGTGCCCTTAAAGGAGACACGATGTAGAAA----------ATATCCTCAGAATTAAAAATAAAATAA
s HiC_scaffold_1 135432133 3253 + 233722169 ACCGAAGCTGGGGGAAATTAAATGCGA--GTT-TACTGCTAGATGTAGCACTAGGCTTGTACAACACCCAAAGAGCCACAGATTTTCTTTCAGTGTCGTAGCAGTGTTTTGCTGACAGTAATTTACATTAACCTTCCCCAAAACCTCAGGAAAGGTACAATCCCTGCTGCCTGCTCCCCTT-TCAGGAGTCTTTGTCCACAGCATTGCAATGAATTTACCCCCACTTGATTGTGATTTGCTATCGTATTTCTCTGAAGGCAATAATCACAACTTAATTATTC----AAATCCCCAGCTCTGAACAT---GCATATG---ATGTATCATTAATCCTTCT------------------TTGGGGAACCAAAACTCT-TCAGGCCAAGTTTGCCATCTAGGGTAAGCATTGCCTGTCCTGAGAGAGATGGCA-CTGTGCTTCTGCTGGATATGAATAGGATGGTGCCCGGTGTGGCCGCCC-AGAACATCCTCTCCTGTCACCCA----------GCACCTGGT----------TTTCCCAC----------------------CTTCATCCATCTGTTAAGACTTTCTCAGG------------------------------------------------------------TAGAACACAGAAAAGAGCCA-CTCGGGTAAACAGCTtacaaaacattattttgctcatttaaaG------CCTGGGAAGCTCACATTGCTTTATATTACATAGATGTTAATATTCACATAGCTTAAGACCTTATTTATACAAACTGTGCATGAGAGACATGAATTCTACTCTTTATTTAAACTTGTTCTTTG-------CAATAAATTCCTTTATAATTATGGTAGCTTGACTAATAATAGCTTATCTT-AGGAATTAAACGTTTTTAATTGGCTTTCTCATATATCTACTTAACATCAATTT-ATCTAGGGACATCAAGGCAGGGTATTGTCTACATAA----------AGCCATGGCTGGATTTT-------AAAAGCAGAACTCCAGAACCACTCTGGAGTGAACATACAAATTTCAGCATA-GGCTGGCCCATCTTGGCATTTATCCAAGAAGAGTTTTGTTAGAGAACGAGAGTAGTATCTCTATTAATGAGAAGGTTATGCTCAAATTGCATACTTTATAGCCAGAGACTTTACAATCAGAACTCAAAACAGAGATGCATTTGGGGATGTATTCTAGAATGCCAGTAAAGGAGCCAGTTATGGT-TTGATCATGTca---atacaaatgagaaaaatattaaat-----agaaaacaaaattatgattCAGTGACTCTTGtggaaaagaaaggtaaaatcTGGTTGGGGATATCTGAAAACAGTGATGTTCTTAGTTAGGGTTCTCGGTGTTGATAGGAATGTGTGCAAGTA--CAAAA-ACAGGTGACCAGTGTCTTCTATTCAAGACCC------------------AGGACGTGAGTCTCTGAGAATCATAATGAAAGCC--GTGTCTTCCACAGCTGAGGAGAGAAGCCATGAGCCCATTTTAgtaattctttgctttttttttttttttttgtctttttcgtttttatcggtaccagggatcgaactcacgaccgcctgcttgcaaggcaggtgcttatgccgctgagctaaatccccaacccctgcttttttttctttttgagacaggtctctctgtgtagcccaggctgaccttaaactcacagaaatcttccagcctcagcctcccaagtgcccgGGATTGCAGTTTTTGTAGTTCTAACTACTAAAAAGACACAGTAG--GACAgtggaaaaaaaag-cagatttgGGGACCA--------ATAGGGTAAATCTCACA------GTAAACTTGCATAAATTGTCTCGGCCAGAGGAGCTTCAATTTTCCTTACTGATAA--GATAAAGGCAATAATATTGAC----TATACCTGGTGGCTGTGGAGATTTGAAATCATGCAAGTAAAGTACTTAACAAGCTACCTGGCAAATACCAGGT---------AAGGCAGCTGTTACTATAGCTAAAATATTGAACTGCATTTTCCAACAGCATAGACTGGAAGAAAATGAGATTCAGTAGTGTTTACGCCCAAAAGCAATTTGTCACCTATTAAAAGGATTTCAAATGTCAGCAAACAAAAGGGGAGAAAGTCCTTCTTTTTTATGTTACAGAAAAAAACTATGTGAAAGTTAAGTGACTGAAagattaaaattacataaaatataacaaGTAAATCTATGACCAAGAATAAATTGGTGATACTTTGttctctccatttattttatatatatattgtcttttttcct-------ttttatcagtaccagggaccgaactcacaactgcctgcttgcaaggcaggcgcttatgccgctgagctaaatccccagccccctctccatttatttttaagcagGAGAGGAAAGTGAGTAAAACCTAGAAAGCATCAGTacgggaagaaaagaaaaacaaccagtaggaaaaaggaagac--aaaagaaatgaa-atgggcATCCAAGTTGAGTTTGAATTATTAAGATGGCTAAAAGATAAATTT--AGAGGGAAAATGGGAACCAAGACCTGTTTCCAATATTATGAGTGCTATAT-------------------------------------------------------------------------------------------------------------------------------------TTTGGTTTG---------------------------------------------------------CAGCAGACAGACAA---AatccagagggatgcaaggctgAGGATCTAGCAGAAGGTAACAACATTGAATC----TTGAAGATCTCTACCTTCGGTG-TGTGTGtgaacttgaaataaaatgtgcCGTCT-AGTAAGGGACCGTAAAAAGATTTTTATGCCGAAATCTTGATTCTGCATggctgaaataaaaatttctcctGAGAGTTTGTAAATGCAGCTGGCCTGCATCTATGGTAGTGACTAAATTTGTGTTTCCTATATGGCCATAAAATCCA-aagtgaataattttatttaatataacatTTCAGGGTTGGTAGTGCCAACAGGTAACTGCCAGAAGAAATATAAATCCTgtccaaaggaattaaaatttaacttaatttgGGGAGAACAGGCCAGAGTGTGTGAGGTATAAGGAAAATAAGCCACCCACTGTGAAGGGAAAttacaaaatat-tctaaaaagaagAGACTATAAATGAGAATCAGGAGAAACAACAGAAATCAAATATACACAAAAGGA------AAAGTGATAGTCATATGCAGActgtaaaatgaatgaaattgatccatttaaacaaaaaataaaaagttgaaaatatgatAGCTG--AATGAAAGAGTATAAGGTTGACCACACATGTtgggaaaga--aatcaaaataagactcctataaattaaaaa-tacaattatttagGTTAAACGAATCAGTAGACTGGATAACCACTGAAGAGAGAATTAGTGAACTGgaagatgaatttaaaataagCTACAAGAGTAGACGTCAGAGGGACTAAGAAGCACAAAAAGGAGGTGTAgatcaagagaaataaaattgagaCAA

a score=110372
s chr3           148769145 4052 + 160039680 [encoded data, 4373 characters]
s HiC_scaffold_1 135436887 4153 + 233722169 [encoded data, 4373 characters]

a score=123287
s chr3           148774496 4446 + 160039680 [encoded data, 4761 characters]
s HiC_scaffold_1 135441883 4295 + 233722169 [encoded data, 4761 characters]

a score=33733
s chr3           148784748 4408 + 160039680 [encoded data, 4946 characters]
s HiC_scaffold_1 135449309 4161 + 233722169 [encoded data, 4946 characters]

a score=16480
s chr3           148792194 331 + 160039680 AGGACAGAGGATGCTGGGGGCATACCTGCTGGAGTTCCT--CTGCACTTCAGTAAGTGATAGAATGTCAAAGATC---TTAGTGCATGACTCTGAGCACTGAAAACGGCACACCGAAGCTTGCCATTGCCCCCACTGTTTTATTAGCATTACCTGTTGAGGGAAAGGTGATTAAGCAGCGAGTGTTGTCTTTACTTGCAGAGTTAGAGGAAACAGTGCGTGTGGGTAGAACAGTGCCTGCTCTGTGATTAGTGAATGACTCAGAGAG-GAGAGC-----AATGGAAAGGGACAGAAGCCTAAAGCGGGACGAAGGGACACCTACCACCTCCCCGATGTGATG
s HiC_scaffold_1 135454768 341 + 233722169 AGCACTGCGGATGCTGGGT-CGCACCTGCTTGAGCTGCTTGCTGTGCTACAGTAAGTGACTGaatgtcaaagaaaaagttaGTGCATGACTCCTAACACAGAAATTGGTGCactaaattttgtcattttccccacTGTTTTATTATCATTACCTGTAGAGAGAGGAGTGATTAAGCAGTGAGTGTTAGCTTTACTTGCAGAGTTAGAAGAAGCAGTGCATGCTGGCGGAACAGTGCGTGCTCTATGATTAGCTAATGAAGCAGAGGGAGAGGGCAGGAGAAGAGAAAAGGCCAGCAACCCAAAGCAGGACTTAGGGGGAACCATCATATTCCCAGTGGGGCG

a score=32719
s chr3           148792961 4159 + 160039680 [encoded data, 4547 characters]
s HiC_scaffold_1 135455165 4018 + 233722169 [encoded data, 4547 characters]

a score=53662
s chr3           148801398 1902 + 160039680 acacacacacacacacacacacacacacacacacactattggttctgCTTCTCTAGATGCCTCCGAGTAGCACAGCACATATGAAGTTTTAATTTTACTAACTTCAGTGCCTTATGTGCACTGTTTATTTAGGGCAA-GCTTATCCTGCTTCTCTGATGATCAAACTAGATTCCAAAGTGGCA-AGGCCTCTA-AGTGTCCATGGGCTATAAAAAACCTCAGGGATACTGTGCTTCATTTCAAACCTTTCACTTCATAACAGTCAATCTTTCTTACAATACCCCATTAAACGTGGGCCCAGGAACATTGAAACTGCACCAACTTGCTATTGATAAACATTCATATTTACA--GCAAACCGATATTAT---TTAGTACCAGTTGCCTTTTTTAAAAGGAAGACAGGCCCTTTAACTGGCTCTA-TAAATGACATTCTTAAATCTTGCAAACTT-TATC--TCTGTTCTTTG----TTCTCTTCAGCACATGCTCCGTTCTTATCTGCTCCTGCCTGCAGTGTTTGTGTGTTCCTCGGTGTTAAGTCAAGATCAGGATAATTAAATTTCACTTGAAGTTCAGAGAGAAAGTGATTAAATTTGAACCTAAATCTTTCTGAAATCGGCACCTCTCCTGTTTTTCAGAGAGGAGAAATTTGACTTGCATTTTAGTACAAATATAATTATCTTGTTCAAGATACTAGATCTTTGGGGAAACAATACAATATTATCTTGGGAAAAGAGAGGGTAATCAGAAATTCAAAGCAGGTTTGTCTTACGATTATTTTACATATTCAGGAAGTAATTGAACTTTGCTCCTGTGCAGACATTTGCCACAGCC--AAGCTATAGGCCTACCAAGGAAGCCACTGTCTACCTACCTCAGCACCAAAGCAAAATGGGTGAAAACTCCGATGCCTCTA---GGAAGCAAGATGAGAGAAAACAAAGCAGTCTAGGTACGAGATGCTGCCAAGATCAgggctggggctggggctggggctggggctggggctgtc--agtacagtgcttgtca-------agcatgcatgaagcccgaagttcagttctctccccagc--------------atcacattaactgggcacagtgaagactacctgtgatcccggcactt--ggagtttaaggcagaaggcc--cagaGTCTTACCCATCC--------------ACTTCTGCTCCCTGAGTCAGTGTGATTCAAAGAGTGCT----ATGTCACCAAGCAATGACAGCTGCAATTCATTCCT----------GCCAGAAGTGACAGAGGTGAC-TCTGGAACTCACCAGGTGGG---------------------GGTCAA----CTTCCTACTGCATGACAGCACTTGGAAAGGGTGATCTCCAGCCAGAACTGGACATGGTGGATATATGTAGCTGGACTCTCAAAGCCAGTT------TCCAATAGC--AATTCAACCCCACCCCCACCCCGCCCCCAGACCGAAAAGCAGCTCTATTTCCTAC-ATGCCACAACTTTAAATTGACTTCTTCCTTTGCC----CTCCATCCCAAGTTTATTAGGGAATCTGAATGCAGAACTCAGAGTAGCATTCCAGTGGAGGAGGCTGAG-ACTCATGCCAGAGCGACAGCTAGCCCCATTCTCCGGGATGGGGGTGGAGAACAAGGAGCAAGGGCTAATTAAAATTACAAGCTAGAGAGAGCAGGCATTGAGAAGAAGAAGCCGACCCTAGCCAATAATTCCAGAGATAAATCATACTTGATTTGCTAACATATAGATGTGTCCAGGAACTATGATGTACAAATGTCTTGAATACAGTTCCAATCAACCTGCAGAACAGTAATCAGGGAGGCAGATAATGAGAAGAGGCGCGTGACGATGAATAACAGGCAACACTGGGTCACCTTGAAACGGAGCAGGACACAGGAACCCAAACCATAACTGCTCAGCTTCTTCAAAGAAAATGCACTCTGCCAGATTTTGGACCTCCCCCCCCCAAaaaa
s HiC_scaffold_1 135464872 1908 + 233722169 ATAAATATTCAAGTACTCATGTACATGCATACACCCTATTGGTTCTATTTATCTGGAGAATCT----TAATACAACAAATAGCAAGTGTTAATTTTATTCAGGGAAATCTTGTCCTTACCCCGTTCATTTAGGGCAAAGCTTATTCCGATGTTCTGATTGTCAAAGTTAACTCCAAGATAAAACAGGCTTCTCCAGCACTGGCGAGTGATAAAAG--CCCAAGGCTACT-----CCATTTCAGGCCCTTCACG-----------AATCTTCCTTC----------TGTAACCTGGTCCTCAGAATAT-GAAATTACACCAACTTGTTATTGTTAAATATTCGTGTTTGCACTTCTGAtcaatattgtattttaataccAAGGACATTC---AGGAAGAAAACAG---CCTGAACTTGCTGGAACAGATTATAATTTTGAAACTTTCAAACTCCTGTCAGCCTCCTCCCAGCGATTTTTCTGTAGCACAAGCTC--TACGTTTCCACTCTCACCGGCACTGTTTGTGTATTAGTCAATGT-GAGTCAAGATGATGATAATTAAATTTCACTTGAAGTTCAGAGACAAAGTGATTAAATATGAACTTAAATCTTACTGAAATAGGTAGCTCTCTTGTATTTCACAGAGGGAAAATTCTACTTGTGTATTAGTAGGAATATAATTATCTTGTTCAAGATACTAGATCTTTcaagaaacaatacaatattatCTTAGGTAAAAAGAGGGTAATCAGAAATTCAAAGCAGGTTTTTCTTACGATTATTATACATATTCAGGAAGTAATTGTTCGCTCTTCATACCCAGACAATTGCCACAGCCCAAAGATATGGAGCTCCCAAGGAAGCCTCTTTC-ACCTCCCTCATTGGAAAAGCAATCAGAGAGCTAATTTGAATTCC-CTAtgtgggagaaaga-gagagacagacagacagagagagagagagagagagagagagagagagagagagagagagagagagatga---tggGGTAGTCCAAAAACAAATATTGCCATAACCCCAGCA---ATGACACCTGCCATTAATTTTGTCAATAAGCTGTAAGCTTTGAAGACCTCAGAAGTCAGACA---TGGAGCATGCCTGGGATCTCAGCTCtccaaaaggctgaggcaagaggataacaagttcaagcccatcctgacgacttagcaaaactctgtctccaaataaaaaaggagaaaaaaagggtgggagatgtagctcagtgctaaagtCCGGAATTACTTAtttagtacaaaaacaaaacaaaacaaaaaccacctcAGGGGCTTCCCAGGGGTGCAGGACCCTCTTCAGCATACAGTTCTAATCCCTTCTCACTGGATCAGTGTGCAAGAGGATGATGATCTTTATAGAGAATTGGACACAGTGGATAAATGTCCCTGGGTTGTCAAGTCCAGCTATACCTTTCACTAATCTAATTCAAATTCACCTCC----------TAAATTGAAGAGCTATTCAATTTCCTATTGCACGGCAACTTTAATTCAACAGTTCCCTTATCCAGGACTACATCCAGCACTGATTAAGGAATCTGAATGCAAAACTCAAAGTTGCATTACAA--GCGAAGGCTACGCACCAGTGCTGAAGTGACAATCATCCCCATTCTCAGTGT----------GAACTGGCAGCAAGTGctaattaaaattataagctAGAGAGAACATGCATTGAGAAAAAGAAGCCGTCCCTAACCAATAATTCCAGGGATAAATCATACTTGATTTGCTAACACATAGATGTGTCCAGAAACTATGATCTACAAATGTCTTGAATATGGTTCTAATCAATCTGCAGAACAATAATCAAGCAGGCATATAATTAGTACAGGCTCCTGATGACAAGCAGCACATAATGTTGTGTCACCTTGAGACAGTGCGGAGT------------ATCTTGTCTG-----------------AAATGTACTCTGGCAGATT-----CCTCATCTTCCTGAAAAA

a score=6825
s chr3           148804107 596 + 160039680 CAGGGTATCTTGGTCAAGTTTCATAGAGCTTCCTGCTCATTCTATCCTCT-CTACCCTTAACCT------------CTTGAAGGGGCTCTGACCTCTGATGCCTATTCAGATGGTTCCGTTCCCAA--------CTGCAGTCAGGGACGGGAA-GCTGCAGAC--AAAAGC---------TGAGCCAGTCATATTCTCTCACTGACTATAGGCCTTCAGCACCTCATGGGGCTGTCGGTGTGGTGGTGGCAGCAAAGGAGGAGCATCACTCGAGAATAACCAGGATAGGATAAGGCAAAGTTTTGAACATGGATGCCACGAACTGCCGAAGGCCCATTGCTAGCTAGCCTGTATGCAGATAAC-------TTATTTGTATGC-TCGAGAGACCAATGTGCTCCACTAGGATGCAAGGACCCAGGAAGACAGCTA-CATGCAGTTCAGACTACTTCATC----------CTTGTCTCCAGGATCCCAACCATAACTGGCTAAGCCCTTACTCCCCCCCTATCTTTGCTCCATTTCTGATCCTTCTGTATGCTACCCTCATTATTATTATTATTATTTGTGCCCTCTGTTTGCAATAA---------TGTCTCTCCAGAGTCTTAAATCAATATCTCTTCCTCACTATTCACCTCTCTA
s HiC_scaffold_1 135466793 625 + 233722169 CAAGGTGTCCCGGTCAAGTTTTGTTGAGCTCCCCGCTCATTCTGTCCTCTGCTTCTTTCAACCTGACATATGAATGCAGAAAGAGATTCGGACTTGAGAGGTCC-TTTTGATAGCCCAAATCCAAGGCAGCAGTTTACAATCAGTGATGAAAACGAGGCAGAAGGgaaagtgtgaggctgtgagtcaGTCACATTCT-TCCCAAACCATCTGCGTCTGGTGGTCCCTGATGTCACCAGTAC--------CATCAGGGGAGGACCTTCACT-GAAAAGAGcaagaacagga-----agaaaatttgAACACAGACACC-TGGCCTTTCCAGGGCTCA--------GGGCCTTTTTATGGGTCACCATTTCATTCTACATAAGCAAAGACAGAACTATGGGTTCACTTTGGAAACagcaacacagaaagaaaaatagcaccTGGTACAGACTGGTTAGACCAATAAGGATCTTGCAACTCATGTCTCTACCACTCCTAGCT------TTGCTTCACttcatgcttctctttctttttgatccTTAAGTATGCCA-AGTCATTTCCAATGCAAGTCACTCTATTTACTGCTTCTTACACATAGGAGGTTCTGTCTCCAGATCTCTAAATAAGTATCTCTTTTTCGTTATTCAAGCCTCCA

a score=7606
s chr3           148806307 1402 + 160039680 TACTTTTCCATCTCCATAACTCATTCCTCTGCACTGTGTCCATCCAGCAAATTCCTACCTATCCTCCAAAACCCAGATCCAACACCATCTCCTTAGTAAACTTTTCTCAGGATTC-CATTAGTCAGCTGCTCTCTCCCTTATGATCTCAAAGGAGCTGAGCCTTTGTGTTGTTTGGTTGTAAATATCTTTTAAAAGCAAAGTGCTTTTCcttaacactgagggattgaggcagaaagatcaggaggttgcacttagcctgggcttcatagagagaacttatctagatatccaacaaacaaaTAAATAAATACTCTTTTTTTTTTGTTTGTTTGTTTCCTGTCTGGGATTTCCATTTGCAGTAATAAAGTCCTCAGACTTTCTATTGACTCAAGTTTTCATCTTTAGCAGTTATTCCACCTTGTCAAGCCTATTT-TTCACTTTTAAAATACAA---AGGGTATTT-TGTTACAGACTGGGTACA--AATTAGAATCTCAAAAACAAGCGAGACAATGCTCTCCA-----TAAA----GAGTTTAGTCAAAAACAGGTGCTCAGTA---GGCACTCATCACCACAACCGAGGCAGGGTAAGGCTTCCTTTACTCTGTGCAACC------------------------------ATTCTCA--TAGTACCCACT------GAGAGAACTGAACTGAACAA-----------------CTACATC----CAGGAAAGAATGCAAAGGTGCAA----CGGGAAGAG------GAAGTGGCCTCACTTGAAAGCTGGGCGTGCATGTACTCTGTAAAGTA-----------------GCTAAATCAATCCTACAGGAACCCCT-GAGTCCTGCTCTCCTTTTCTTTCCATAACAGGGATTATTGCACAGAGCTGAGGATCCCATTGGGCCACATGAGGAAAGGCACTCCTTACAGATAGGAGCCTGGAGCTCCAGGGCCCCTGCTCACAGGATGCACCTGAGAGCATTTCCTGGCCAGGCGGCTGGAGGAAGATAAGGGCGAACCA---AAACTCTTGATGTCTGATTGTGTGTCTCAAACTTGAAGTC--ACGAGGTATATACGC-TGCTTCCGATATCTTCCCAGT----------------------------------GAAAGAGGC---GGCTACG---------------CAGTC---ACTGCCTGgtgg--------------------------------------------------------------------cagacag------------------------------------ttctggtg------------------gaggctcttt-----acatatattaccgat--------------------aatcctcgggccaaccctgggcaaggtaggctga--ttccaattttccggaggaggaaacaatttaggagaggttaagt---------aaGAGAGAAGAGGCTTAAGCC-GTGTCTGCGAGAGGCTG-ACGCTGCACAGATCCTGATACCTCCGTTTCATTAAATGATCGGCACTAATAT----GCATATAAAG-GCACACT-AAATCAGGAGAA-TACGAAATAAACGGATAAATATTCAAAGATCTGCTGCTTTTCAAATGTATGTTAAAACACGTTAGATGTTTTAGATAG-GTGTTAGACGTTGTCATTATTATATTAGATAATCAACTCTGAGGG
s HiC_scaffold_1 135470389 1550 + 233722169 taattttctttttacctaGAATGCTTCTCTAC------TTTATCTTGCAAACTCCTACTCATCCTTCAGAACTCAGTTCCAACACTATCGCC-TAATAAGCCTTTTCTAGGACTCTCTTTATTTGATCATTCTCTCTTTGGTGCTAGC-GAGTAGATAAGCCTGGCTCTCACTGGGCTGTAATTACCTAAT-------------------------------------------------------------------TGGGTTTTAAAATAGGAGTTT--------------------------------CTCTTTCAAGTCATTTCAATTGTCTCATAACTAAG-------TTGTTAGGATTTAGGCTTTCATCTTTCCTACTGGGTAAATATTTAATCTCTAGTCCTCACTGCACTTTGGTAAGCCtatttctttgcttataaaaTGCAGATTATAGTATTTATGCTATGGGATTAATATAagaatgagaatttttttaaaa---gagataatgtTCATCGGAATTTAAATGCCACGCTCGGCTGACGGTAGGTGGTCAGTACCTGTCAGTCATCCCTTCA---GAGGCAGAAACAGGTTTCCTTT-CTGTGTTCTGCCACCTACTTGtagaaacaaaacacagagcaGATTCTCAACCAGTGTTTCCTAGAcgaaagaaagatgaaacaaacCAATGTAGCGGGAGCTTGTCTACAGCACtgtaggaaggaaagagaaggctAAAGGCGCGGGAAGGGAAGCCAGAGGAGG--------GGAAGCTGAGTG---ACACACTCCTCTAGGTAGGATAATATTTTAATCGGCTGGATTAATATTCCAGAAGGATGTCGAGGGCTGCTCCC----TCTCCCCATTAC------------------CCTGGGAGC---------------AGTAGTGGCTCATCTGCTATACTTGGACCTGGTGCTCT-TGGTGCTTGTTCGCACAATGTTAATGAAAACATTTCCTGACCTCATGGTTTGAGGAAGATAATGACAACCCAGCTGGAGTCCCGATGGtagattatttttctaaaatttaacgtcataccaggcgtggtggtgcactcctgtaatcccagcagttgggaggctgaggcaggaggatcattgcaagttggagaaaagcctggactacaaagggaGCCCAAAGCCAGTTTGAATCAcatggtgagatcttgtctcaaaaagacaaaagcaaaaacaacaacaacaacaaaaaacaccaaccaaccaaccaaccaaacaaacaaacaaatccaaagTCATGAAATGTTTAAGCCGCTTATAGTGTCTTTCTAAAGAAGAAAAGTGACTCTTTGTGAAGCGCCTATCACCAGCCAGACAGGAGAGTACTTCTAACTTCTCGG--CAGGCCTCACCGAGGTAGTCCCCCTTTTCAGTGTTACAGAGGAGGAGTCATTT---GGGAGGTTAAGTTATTTGCGCAAGAGAACAAAGGCTTAAACCTATGTCTGCATGAACTTGAAAGTTTCCCTAATCATAATTCCTCTACTTCACTAAATGATTTATACAAATATCTTATCATATAAAATGAACACTAAAATTGGGATAAGTACCtaagaaatgagtaaatattcatggATTCGTTGCTTT--ACTTTTATGTTAAAATATGT-----------GATAGTACGTTAGGTAATACAAACATTAGATTGAATAGTTAACTATAGggg

a score=566717
s chr3           148812193 17109 + 160039680 [encoded data, 18475 characters]
s HiC_scaffold_1 135475350 17105 + 233722169 [encoded data, 18475 characters]

a score=61346
s chr3           148830335 3034 + 160039680 TGACTTGAAAACACAGAAATAATGGAGCAAGTGTATGTTTAGTAGGACAAAATGCCATTATTTCTAAACAAATTAATTACAAATTAATTATAAAAGGAGGCTCACAAGGTTAGCTTTTAAGGCACAAGATGGCAAAAAAATACTGTCCATCTAAGAGTTTTCTCCATGCCTATTAAATAATAAAATTTCAGTGACATATATTATTTGTAGCATACTGAGAAATGGAAGAATTGTTTATGGCATA-GATATTGAGCAGTG-AGGAGGCCACCCACCATCACACACA-----GAGGGTGTTCCTGGAATGAAAGAGAGTATGGAGCGGAGCACAC-----------------TAGTGTCTCACA-CTCTCCACTGATCCAGCGTTTGAATA--TTTTAATGCTAAACTCG---TGTCATAGAATAAATAATGTTACTATGAT--TTTTCAGGAGGCAGCTCACCCCACCAAA--GAATTATGGCTTCTCCACTTAGCATATTTTAATACACTTCCAACTGCCACCTTCTCCTCTACTTCTTCCTGACAATCTTAAAATGGAACTGGGGGGGGGGGGCGGGCTCAGATCGAGACCCAGAAAAGCAAAT-AAAAGCAGCTTCCATAAAAAGAATGGTTCAGAAAAGTCACATCAAG-------------ACAAAACAGGTGGTGTTCAAGTAGACTACTGTCCACACACTTGAGTTTC---CTTCTGTGCACCTTTCCCAAGACATAAGTGCTGTTCTAGTCCATACTAGTATTTTCTGCTTTGTCTTTTCAAAGTAACAAAATAAGTTAAATGAAATAATAAGTCAATAAAATTTACTTCTAACTTTTTTCTTTCTCTATTTTATTTTTACTGACTTCTATAAGCTTTGAAAAATCAAGAAATGACAATAACCAGGTAT------TTCCCTGTTTCTCACTAGAAGGCCACAGTCCCTGCTCTT--GCCCCTTGTCCTGTCTT----------AGTAGGACATCCTCTGCCCCACCCTCTGCCCTTTGTTG--CTACCCCCAACACAAATACTATTTAATACTAATGAGTTTAAACATAATATTTGAGGATAGTTTCAAAGAGTATATATC--------AGGGGGTAAGGAAAAGTGTTAGGCTAGACAGGCAAAGCTTTGTCTAAGCCC---------------------AATTATTCACATAAA----TC-----GGTAAATTTATGTTATTAGAACTCTGTTAGGTA-----TGCATGTACCCTAAATGGAT---------AGGGTGATGACT------GGGTAACAAGCAATTCACCCAGGAATCAACAGGAATTAATCCTACATTAACACTACACTGTGGGCTTGTGTGTGCAAGTGGGTAAGAACAAGCCT--------------AAAGG--GGCAGCAG-----AAGGGGAAAAATTCTACTCAGCAAATAGATAGACAGGAAGAAT-AGATAG-----------AAAAGATTAGAACAGAGAGAT----------------------AAGATGA--TAGATGGATAATCAACCAACCAATCAACGAAACTGGGGCAATCTTCCAATGATTAATAATACCCATAACATAACTGCATATATTATTATTGATTAAATAT-CACCTATATCACTAG-CATGACCATACAAAAAGAGTTTTTACAAAAGGGAG--ATTCCCAGGCATTAGAGGAAAGCATAGTTTGTCTCATGGTCATCAACTCGCTCCACGGAATCAGATCTGCCTGGGCTCAGCGGCTTAACATTCATCTCACAGCTTGCAGGGCCGACATGGATATGATAAGACAGAAGACCAGAAACAGCGCTCCGAAATAACCTGGCTGAACTGCACATGTTCCAAGCCTCTTTGTCCTCCCTGGAGCTTTTGCTCCCTGGCAAA-TGCAAGTCTAAGACCTCGCTTGTGTCTCCAGATCTCTGCTGTTAGCCAAGCAGAAACCGATTTCCCCT--GGACGAGCAGCCAGAGAGGTGTTCTCTGAAGAAGACTTCTAAGTGAGTATGTGAGCTGAACTCTCACTGAACTGAATTAATTATTAATGATGCAGATGGAGCTGTCCAAATGATAAGAACAGCTCCTGACGTGTCATGATCCAAGGCTTCATTAAACCATTTCAGGCATACTAATGGTTTCCCCCTGCTCATTACTAACTGGCACTTTCCTCATAGATATAATAAGTCCAGTGCCTGTAGGCAAGACATTCTATAGAAAGGCATTAAGTAGGAAGTTTTATTTCTCATAGCCTCTTATTCTTCTTCAGAGATCAGTAT------AAAGGTATACCGATTTAATACTAGTGTTAAAGTGGTTTAAACTCAGAAAAGTTAGAA----TTCACAATGTATTTTCTTGGAATCACAAGAAATG--TTTTGTTATAAGGATA--CCTTACAGAGACAGTATATAATATAGTTTATA----------TTATTAAGACTCGTGTCGAAATTAGATTTTAAATGCCTTGTATCACCACAGTATCTACTTAG------GTGTTTTCAGTATACATATGCTATAAGATCTTATTAATCCATTTAGATGAGACATTGTATTTTAAGATAT--TGTTTTGCATT---------------CTCTCT-GTGCTGGGCTTATTAGAGGGCAAAGCGATCGGTCTCAGAATCTCGAGGATATCCTTA---TGCAATTGCTCCCTACTGGTTTCTTTGGCTTGTTTTTAGGTTGGGAACAATGTTATCCAAAGCCCTTCATAGTTCAG-TCTGAAGGCAGAATAGAGAATAAATGTGAACAAAGACTAATGCATGGTGG-GCATTCACAGAAAATGGGCGATGCACTAAATAGAATACCTAGACCACTTTCTTACTTGGTACACAGTAAA-----TTACTTTCCAAATGAAAAAACGGTTTTCATGTATTAGTGTGCATCTTTATAGATATAAATCTTACACAAC------------AAAATATGTAACATGTAACATTTTTATGTCCCAAA---------CATACTTAAAGCTGCCTTTTGTATTTAGTTTTCAAGTCCAAATGGGCTTTGTAAGAAGCCCATGTCTGTAAGGAATGTTAACATTACATGGCAGCCATTAGTCACTTCATTCTAGAACGCACCCGAGAACGTGCTCACATGAACTAAAAGCCAGAGCTGGGGCCATAACCTCGGTAGAACAACCTAATGCGAAAGAAAGCATCACGCA-AGAACAC-TGACGACACATCAGTGG-----CTTACACGGGCATCCGTCGCTACTTTCAGTTTTGCTTTG
s HiC_scaffold_1 135495123 3013 + 233722169 TGCCTTTTGAATACACAAACAATGATGTAA--------TCAATAGGACAAAATGCCATCAATGCAAgacaaaataattatgaaa-aattatgCAAGA-----CATAA----------------ATCATATGACAAAAAAGC--------TAAAATAAGTTCctcaaagtcattttaaaaa-ggaattttgct--CATATATTATTTA---CTAActagaaaatcaaaaa--tatttgtatCATGTGGTATTGAACAATTTAACATACTATCC-CCAGCATATATAATAGCGAACTATATCCTGCAAGTAAACAGCATATATACTGAAgcataaacacattttttaaaatgtagttttacCCTTCTCTTATTTACTCCTATGTTTAAAAAAACTATGatgctaaatttaaaatttcacagaATAAATATTGTTGCTATGATCTTTTTTTGGAGGTAAAACACTCTTATAAATGAAGTTATG-----------------ATTTTAATAGATTCTCCACTTCTCTTTTCTTAGCTAC------------------------AACTA-----------------------------CAGCAATACAAACCAGaggtag-----aggaaaaaaat-------aatagttactctaagcccccccccccccacaaaaaaggTTGGTTTCAAATGAACTACTATCTGCTGATCTCAGTTCCTTTCttctctgcatttttctcatgataTAAATGCTCTTTCCAGCCACAca-----cttct-ctttgtcttttt------------ctggttAGAATAcgcaatttctc-------tctttttttttcttatttcccccTCCACTT-ATTTTTTTTgacct------gcattttaaaattaa---atcaccACCATCAAACACAGAATATCCCCCATTTTTGATGGGAAG--TAAAGTCTGTACCATTCAAGTACTGGTCCTCTCATTCACATTCCAATGAGGCTATTTTTTTGCTC--CTTTTGTTTTTCGTTATTCTCACCCCAAAACA------------CACTACTGAATTTAAACAAGATATTCTGGGACAGGTTGAAAGTCTCAATGCCCTAATAAAAGTGGAAAATCAGAGCTATAATTACAGAAACACAAAGATTTGTCTAAACCTGGCAAGTACATGTAGCTACTTAATTGTTCGCACAGAGGCCTCCAGAAGGTAAG---ATTCTATTAGGATTCTATTAGATAAATTCTGTATGTCAACCAAACAGCCTCAGCACCCAGGGTGATGATTCACTTTGGAGCTGAAGCAATATATTCAGGAAT----------TAAGCTCATTTTAACTCCTCCAAGTGTG--TGCGTGTACAGGTATAGAGAAGTTTGTCTTAGAACCCTATATGAAAGGCTGACAGCAGttagaaaagggaaaatttttccTGTTCAACTAAATAAATCACAAAACTGAGgcagtttttcttttccaaagaccA----ATAGCAATCACTCTTTTTTACCTATCTCAAAAGATGAATTACATAAATTATTATTCAAATAATTC------CCTGTGAAGTTTGACGGTGAATTTCAGTGCC----ACTTAACGATACAGAACAGTA------AAATATGAACTTGCATTGATAAAcgtgaaaatacaaa--gaatcttta-aaaagcaAGTCAGTACCACAGTTTACAAGAACTT-CAGTTTGTTTTATGGCCATCAACCTGCTCACTTGAATCATATCCACCTGAGCTTAGCAGCTTAAAATTCACTCCGCAGCTTGCAGCGCTGACATGGATATGatgagacagaagaacagaaacaCCACTCTGAAATAACCTAGCTGCACTGCACATGTTCTGACCCTTTTTGTCCTCCCTGGAGCTTTTGCTACCTGGCAAAAGGCAAGTCTAAAACTGTGCTTGTATCTCCAGATCTTTGCTGTTAGCCAAGCAGAAACCTATTTCTCCTTGGGACTGGCAGCCAGAGAGGTGTTCTCTGAAGAAGACTTCTAAATGAGTGTGTGAGCTGAACTCTTACTGAACTGAATTAATTATTAATGATGCAGATGGAGCTGTCCAAATGATAAGAACAGCTCCTGACGTGTCATGATCCAAGCTTTCATTAAACCATTTCAGGCATACTAATGGTTCCCCACTGCTCATTACTTACCAGCACTTTTCTCATAGATATAATAACGCTAGTGCCTGTAGGCAAGACATTCTATAGAAATGCA--------GACGCCTTATCTTCTCtagcatattatttttcttcacagaaCGTTATTATTGAAAATGTACACCTATTTAATACTA-Tgttaaa-tggtttcaattcaggAAAGTCAAAAATGCTAAaccatat-ttttctaagaatagCAGAAGATGATTTTTGTTGAAAGGGTATTTCTTACAAAGATAGTAAATAATACAGTCCATAAATAATACAGTCATTAAGGTTTGTGCCTGAATTGAGTGTTCCATGTCTTGGATCATCAGAGGATACATGTAGGCAAATGTACTTTCA--ACAAACAGGCTACACTATCATATT--TAAATTTAGGTCAGACATTATTTTGCAAGAAACTGTGTTTTGCACTACTATATCACTctgcctctctagtgctgggatgatTAGAGAGCAAAGCAATT-GTAGAAGAATCC--AAGATTTGCATGCACTGTGGTTGCTACCCGCtaggat------tttattttcaatttgtgaACACTGTTCCAAAAAGCCCTTTATACTTCAACTCAAAAGATTTGGCTGAGGAT---TATAACAACACACTATTCAATAATAGTGCAGTCTC-----ATTTTCTATGGGCAATAAAATgtcctttgtctcttttcttaCCCAAAACTCAGTGAAATCTGATACTCTACA----------------------CTTAACTCTTACCTTAACAgatacaaaacaaacagaactgaAGTTCAACAAAAGTA---AACACGTGCCATtgtcaaaaaccaaaatatttttcaaaacataaa---------tgcATTTAG----CAAGGGCTTAGGGGA--TAAAGGAAGCTTGTATCTTTAGACCATGCT---TCTTCCTGTCAGTTCTTTGTCATTTAACTCTAGAAAG-ACTC-AGGCTGTTAGCAGACAAACTGAGAACAAAAACTGTTGCAATCATCTGGATTAAATAATTAAGATC---AGAAATCACTTTTTATAGAACACTTGAGAATATACTACTGGTATGATTCATACAAGTATTAATCtcaattttca-ttttgctttg

a score=166014
s chr3           148833663 6174 + 160039680 [encoded data, 6558 characters]
s HiC_scaffold_1 135498803 5745 + 233722169 [encoded data, 6558 characters]

a score=96628
s chr3           148846418 3596 + 160039680 TTTACCTAAAGGAGGTGGTGTTTAATGTAAACAGTCACACTCCAGTTTTATGAGCTAAAATATGGGACTGGAGGAACATAGT-----AAGTGATTTAAATT-ATTAGGAA--TGTTGTA-AAAATGGAAAAGCATTTGCCACCTTCTAGTATGAAGCACTTTCATCCCTTAAGCAATCCATATTCTAGCGTTTAAGTGCTCCTAGTTTTTTTCCTTTAATGATTTTTCAATTG----AAAAATTCACACA--CTCAGAAAAACAACTTCTATAAGATACAG-GCAGACTCCAGCTTAAGTATTAATTTCATGAAGTATGATCAATAATTTCTTTTCCTTA--------AATAACTCAGCAAAAGAGAGAGTCTGATACTGGGAGACGATACACCCAGGACACAATCTCTGCTCTCTTCAACATCTGTCTTCCAAATTAAATGT-------------GATGCACTCACCAATATTTTCTGTTGGCATGGAGACCCTGGTTGGTTCCAAAAGGTTGTCTGCTAGGACGAATGCTCCTTCTTCCAAGGTATCCAACAACATTGTGGCTGTGTGCGCCTGCTCTGAAGAATTCATGTGTTTCCAGGATTCCAAAGCCTCAGCTCTCAGAAGGTTGTCTACCGTGTCCACAATTGCCTGCATCCATTAGAAAAGTGACCATTAGTTCTGACAGCCTCTAGAACTCAGGGGATTGT-CAATCGCTGACTGGTGACAACTGTGATGTTTACCTGACGTGAGGA-TTACTTTCCTCTCACGAGCTGGGCAACTGTAAGTACTA--------------CTTCACAAGAGCTCTAAC------TAGAC--AGGAGCGAACAGCTGCCTGACATTAAGGAGTCCTTAAGAAAGGTGGCGTGCTTCTCATTTCTCTAAGCATACGGCAACTGTT-GCAGGGGTCGTGGGACTCTCAGCAGCAGCTCCGA---------------CTTACAGGAGTGGTCACTCACAACTAGTGCACTGTCTATAACTTC-AGATTTTAAATGTATGACTAGAAAACACTGATGTTTCTGGAGTAGGCCAGCATC-CGCCAGACATTTCACTCATGGTGTCCTTTTGAACTC---------CAGTAGGTCAAA--GTGTTTTAC-----ATACTTTGTCTGTTATCAC------GTGAACAGAAGGGTAAGCTC----TCTAAGGTATATAAGCGATGTTTGGCCCTCCCCAT--------CACCTAAATAACACACATACATATGTGTGCATATGTTAACTCCTATGGGCTGGTCTGCTTTTACAGGGATGAAGAAAACAGGCAAAATACTGAAAGGCTCTACTGA----TCAAGGAGAGTTGAAATATATAAGGTGCTGAAAAACAATTGAGCTGCAAATATTCCTAAGTGCGGGTATAATTTAACCCCATGCAAAACAGCATTAAACAACAATA--------------CAGCTCTG--------------TGGGC----TAAAA-----------------CACTGGAGGCAAGCACTTGCT--GTAGTTAGTCTACAG-------------------TGTGCTGTGCTGTACAT--------------AGCTGGACAGCAGAAGTCAGTACATGTGTTTACTATTCCACATGCCTACACATAATGTGTCACCAGGCTGCTATATGCATTGTTCTGATCCATTGGTAATCACTGAAGAAATATATCATGCCATCTACGGAAAACACAATGAACATTTTTTTTTCCTTTTTTTTTAAAGAGGCTCTGTATGAGCAAGGGGAAAAGTTGTTTGAGGCTATTGTCAGAGTAAGATTAATTAGCTTAATCCATCTTAATACCCTCGTTCAGTCTGCCTTGTGAGCCACCATGACCTCCCTGGCAGGTGGAAGGTACTTCCAGGTGGTGTTAAAGGCTTTTTCTGTTC---CTAATGGGAGACAGCATAGTCCAGAATGCTCGCACGCATGCCTCTTCAGCCAATAACTAGACTGGAACAGGAACTGGTCTGCTGAGGCCAGATTCATTAGTCACCAAGAAATACAGACTAGAGTCTCTAATCTAAGTTACAAATGAATCCTCTGTAGCCAAGTAGAAACTTACTTCATTTGCATAGGGTAAG------TCTGATTTGTAATTTAAGGAGGCTTATTATTCTTGTCTGAGCAGAGCAGCTCATTTGAAACACATTGAAGATGACACTGGTCAGAGA-TTAAGGTCATATTGCAGTTTACCATGTGAATGTACTTCTC-CTGACAGCTCACGAACAACAATGTGAAACACTCCTACTTTATTACCATTTGTGATTTCCAGGTAGGATCAAGATAACCATCAGCCTAGCCATATTCCTGCAACAGTCTTCCTTTGCCAGAGCTGGGGGAGGCTGACTCTCGGCTCAGTGAGGTATGTCTTGGGCAACATACTTGTTGCTGCATTCCACACAT----TAGTATCTTAAGGAAAACCTAAACATCTGAGTGTGAACTACTCCACAGATCTGTATCACTTACACCCATAATCAGATTCTTAATCTGATTTTTTTTTTGAACAT----------TACTACCTGCAACCTGATTTCCTTCT-GCCTTTTCTTGCAAAGGGCTCAGAGCCAAAGGTACCATTTGATAACAGGCGAGATACTGTTCTTGGTGCCTAATCCTTGACCTTGCTAATGGGTCCCTGTTTCTTATGCCCAGCCCTGACCTCGTCAACC-AAGTTTATGAGGTTGCAGCTTCTGAGTAACTTCTC---ATTTATAGATGTTCTTTACTTTGTTCCCCCACTATGTGAATCTGTCCTTTTGGGTTAGATTTACCACGGTAAT------------------------AACTAACTTCCCCTCCTCAACAACAAGAAACTTCT--AATCTACAGAGCAACCCAAAATACAAT----------------------------AGTACTAGCTTGGCTTGATGGCAAGGAGAGCCTCAGCATGGTGCCTAGTATGTTAATA---AACTAGGA--AAAAAATCCCTGGCCCTGTGGCACAGA-------------AGTGCCTCTTTGTTCCTGGGCACCTGAGAAGAACTCCCACCCAGCACAGACTGGAACCACCACTGCAATGT----TCATATTTTACTTCTGGATACCCACACT-CATCAGCCTGCTTCCTTAAGCGAGTTCCCAAAAGGCAAGAACAAAGCCTAATTTATTGAAGAGTACACCCCAGAGATCAGAAAGCAGTGACTTTCACATGCACATATATCATGCCCATACAGTCTTTGATATGATAAACTGCCAAGAATATATCATAGCTGTT-----TCAGGTTG------AATCCAGAGATGGTAACACAAAACAAAGGGACTACTGTGTGCGTTC-TTCCAATTCAGAGGAT-ATTCATTGAAGTTCTTGtatttttttttttttttaataaatGGGAAACCAGCAAAAA--AGTTCAGTAAAGTGTGGTTGGCTTGTTCTGGGAG---------------AAGCCAACGCTGGTACAGCTGATATGGGGCACATTGTATAATTATCAAAGACTGAGA-ACTCGGGACCATGCAGCAAGAGCAGCAAGATGGCGGAAGCGTGGCAGGCAGCCGAGGAGGGGAGGGAGCAGGG-GACAG-ACAGGAAAGATACCTTAAGGTAAGCCCTGCATGTCTTCTCTCGTTTTTGGAGCTTTTAAGTAAAAGAAAAGAAAATCAGAGGTTAGATTTTATCTGCTGAAAAAAAAAATGAGGAAAGAAAAAATCCTC--AGATTAAGTTGGCGTCCTTTAGTTC--TAAGGCGACTAAGTACAAATATCCTCTGGGCATCTGGGCCACTCCGCTTATGGCCAAAGCTCTGTTTTTATTTTATTTTTTA---------------------------CAAGAGGAAAAAAAAATGAGAAAAAG
s HiC_scaffold_1 135512977 3766 + 233722169 TTCACCTGAGggcaattttatttaatataaacattt-tgCTCAAATTCTGTGAGCTAAAATATTTGAGAGGGAAAAGACATTCCATAAAATAATCTAGATTCATTAGGAACATGTTATGTAAAATGGAAAAGCTTTTTCCACTATTTCATATGCGTACTTTTCCTTACTTAAACAATCcatattttggaatttaaatgCTCTTACGCTT----CTTTTACAATTTTTCAGctgggaaaaaaatacatatatacccaTAAAACCAACTT-TACA-GATATAGAGTAGATTTAggcttttttattaattttattaagcaTGAGCAACAATTTCTTCTGCtaacagacaaaaataatttaaccAAAAAGA-AGTTTAGCAGTAGGAGATAAGactcaaagtgaaaaaaat----tctcTCAGACATCTACATTCTGAATCAAAACTAAACCTGGCAATAGATAGACTTACCAATATTTTCTGTGGGCATTGAGACCCTTGTTGGTTCTAAGAGATTATCTGCCAGGACAAAAGCCCCTTCTTCCAAGGTATCAAGTAACATCGTTGCTGTATGTGCTTGTTCAGAAGAATTCATATGCTTCCAGGACTCCAAGGCCTCAGGTCTCAGAAGGTTGTCCACCGTGTCGACAATTGCCTGTATCCATTAGAATAGT-ATCATTAGTTCAGACTGTTTTAATAACTAAAGTGATTTCACAATTGCTGACTAGTGTCAACTGTAGCATGTATCTGCCACTATGATTTACTCTTACTTCAAGA-CAGAACAATAGTTGGACCTGCATAGACCTGATCCCTTCATAACAGGACTAAAGACCAGTAGACTTATGATTTGACTACTGTATGA--------------GCAGCAAGGTGACTTGTGTT---TTTACCTAATCATACCTCAGCagctggaagaaaaaatataacaaacatcAGCAGCTCTGAATCTGAGGCATGACCCTTACAGTTATGGTTAC-AACTACGGTCATCCTTTTTAGAATGTCAAGATTTGAATCTTCTAAATAGAAAACTCTGATGTCTCCAGAGCAGACTAATATTATGTCTGAAAGCTGAATCATGTTGTTTTTGGGAACCTAAATTAGAATAGTAATTAAAAAGGTGTCTGACAAGAGACAATccattcattattattatttattaaattaaaatataattttcaagtttAAATTATTTGCTAACATTTTCACTCTTCCAGTTCCCTATCCAGCTAAAAAAAAccctta---ataaataaaaatgactactCTCA--------------------------AAGATATTAAGCAGAATATTTAATGCCTGCAttgataatttaaagaaaataataaaacataaattcatCACAAACATCCAAATTGCAAATATTCATATGTATGGGC-TCATTTattactatgcaaaataacatttaaaaaaagtaaccCATGACACCAGCAgatataattaaatgaataaCAGGGCATCTTAGAAAGACTTCCTTCAGTGTCTACCAGTAGTTAGTAGCTACTTCATAACTAGTCAACTGAAGGTGGAATCTTACTTACTGCGTCGGGCTGTACTTACACCCCGACTATGACCCAGAGAACTGAAATCACCGTATCTATTTACTACTCCATTTACCTAGTCATAATCTATCATTAAACC--------CAAAGT--TGACCTATTGAt-attactgaagaaaaagaacatacattatataaaaaacaaaac-aacagtgaaaGTTGCTAGTTTAGGGCAGAATATTGAAATGAGCA--GGGAAAAGTTGTTTGAGGCTACTGTCAGAGTAAGATTAATTAGCTTAATCCATCTTAATATCCCTGTTCTGTCTGCCTTGTGAGCC-CCATGACCTTCCTGGCAGGTGGAACATACTTCCAAGTGGtgat------tttttcccctctctctatTAGGAGATGGAACAGT-CAAACTGCTCACACAGATCCTGCTGCAGCCATTAACTAGAGTGGAACAGAAACTGGTCTGCTGAGGCCAGATTCATTAGTCACCAAGAAAAAAGGAGTCGAGCCTATAATCTAAGTTACAAATGAATCCTCTGTCACAAGGTAGGAACTCAGTTTATTTGCACAGTGTAAGCCAGCTTCTGATTTGCAATTTAAGGAGTTTTATTAGTCTTATCTGAACAGAGAAGCTTATCTGAGACATTCTGAAAATGACACTGGCCAGAAATTTAAGTTCATGCTGAAATTTACCA--TGGATACACGACTCACTGATGGCATG-GTTTGTTAATTCAAAAACCtctttatttattataatttgtatttttccagtGGGATCAAAATGATCACTAGCCTAATCATATTCCTGAAGCCATCTTTTCT-------GTTACAGGAAAAAGAACTATGCTTTA--GATATATGTCCTGGGCAACATACCAATTATTACATTTTCCACATTAACTAATAGCTTAAAGGTGATGCGAACATTTGCATTTGAAAAGTTTTATAGAT-TGCAGCAGTTAT-------------TTCTTAGCCCCA--------TTAAACAGGCTAAAAAGAGACAACATGAAAGCAGCCTTTCTTCTCACACTTTCTTAGATAGTTCTCAGGTCCAACAGTAT--TTTACTAACTAGTGAG----tttttttgg----taatattt-----------------tttgCTCCTTA-----------GACTTTGCCAATCAAAACTAATGAAATTATGGCTTCTGCATAACCTGTTTGAAATTACAAAATTTGTTTGTTTCGTTGTCATAGCATATAGATTAATTCCTCAAGATTTAGTTTATCATGGTAATGGTACCCAGGAGGGTAAAGTTAGAAGATTACTAACCC-------CGAAATGGAATTTGTAAAATTCACAGATCAAAATGAAATGCCATTTGGTTTTAATGTTCTGAGCCAACATTCAGCATTAGTGTGCCATAAGTCTACTGTTAGCCTTTCCATTTTCCCTGTTAGTTGGATATACATCCAAGAAGAAAAAATGGCTGG---GGCGGAAAAGATTCTGAACCTAACAGTGGTTCTCTGTTCTT-ACTAGCTGGGTAAAACCCATATGCAACATATGCCAATA-TATCATAGTcacattacattttatttcatttttagtaacCCATTGTATATCAACCTGATTCTAGAAATGAATGCTCAAATTTTCAGGACAGAGcctatttcatttaagagtatgccACAAAGATAAGAAAGCAGTGACTTTTTCATGCACATTCATTATGACTATACAGTCTTTGATATGATAAACTGCCAAGAATATATCATAGCTGTTTTAACTCAAGTTGTTTTTTAATCCAGAGATGACAACAGAAAACGTCTGAG--ACTATATGATTACTTTCCAATTCAGAGAATGGTTCATTAAAATTCCAGtactttt------------ggaatggaaaaacagcaataattattcaaataaattata---tGCTTATTCTGAGAGTAATATACCTGTGAAAAGCCAACATTTGTACAGCTGATATGGGGCACATTATATAATTATCAAAGACTGAAATACATTGGATCATGCAGCAAGAT------GAT----AAAGCGTGGCAGGTAGCTGAAGA-GGGAGAAAGCAGGGTGACAGCACAGGAGAGATACCTTAAGGTAAGCCCTGCATGTCTTCTCTCGTTTTTGGAgcttttaagtaaaagaaaagaaaaccagaggtTAGATTATATCTgctg------aaaatgaggaaagaagaaatcCTCAAAAAATAAGCTGCTGTTCCAGAGTTCAGTTCATTGTTTATTTACAGGAGTCCTCTGGAGGTCTGTGGGTCTACACTAACTGTTTACTTAcatgttttaatgtattttatgaaatatatgaaGCCAAAGCATGTTGactaaggggaaaagaaaaagaaaaaggg

a score=421437
s chr3           148850823 15915 + 160039680 [encoded data, 17415 characters]
s HiC_scaffold_1 135517279 16269 + 233722169 [encoded data, 17415 characters]

a score=7668
s chr3           148858781 557 + 160039680 GTTATTGTTCCATACGTAGAGTTGGTTGTCTCTTGGATTATAATCCACTGCAGCAATATACTGGTACTGGTTGGGAAAAGGAACGTCCACGTACTCGCCCCGGCTTAGTCGCGTGTTGTAGATGTAGTC--AATGGTGTTCTTGCCTGCTTCGCTTTCATTGTCTTGGTACACTGACCTGACCACATAGAGAACCCCACATATCATGAAAGCATTGGACGCCGCACGCTTGTCATACGCTGTCTCCCAG------GTTGCCTCGAATCGAAGAGTGTAAGGGTTGAGCTGGCTGATCACGATCATTCCATTGTTCTGCTCCGTGGCATAAATGACCCATAAGCCGTTCTCATCCACTGCGAGGTCAATGTCTGTCTTCCCACCCCATCTGTAGGGTGACGTATCGTGGTAGTTGGCATAGTTGATGATAGCCTCGCCGCTCTTG-ATTCTAGTCCTCAAGTCAA------ACTTAACAATGTTTCTGGTTCTTTCCTTGTTAAAGAAGACGGCTCCATCATACACCACAAATCCAGTACC-GTCTACTCGGTTTGGAAGTTTGTATGTTGTTG
s HiC_scaffold_1 108280292 536 + 233722169 GCCATTGTTCCAGGCATAAAGAGCTCTATCTCTTGCATTGTAGTCAAGCATGGATATATGAAAGTACTGGTTATGGAAGGGAATATCTGTGTACTCA--------TAGGTGGAAGTTTTAG-TGGAATAGGAATAATACAC-------CTTGGCTCCAGTTAGATGGG-------AGTTAGTGACATACAGTGTCCCACAGATCATGAAAGATTCGCCTGCACTTCTCTTGGGGTAGCCAGTGCTCCAGCTCTTCGTCACCTCCAA------GGTATCTTGGTTAAGTTGACTGATGACAATATTGCCTGCATTCTGGTTAGTTGCGTACACAGCCCACAGTCCGATTTCATCTGCCATTAAATCGATGTCAGAGAATCCACCCCACGTGTATGGGTAAACATTGTGAAAACCAGCATACTCCA----AGCTTCGTTGGGCTAGCACTC---TCCCCACATCAAAGCTGTATTTGATGATGATATTACTCTGATACTTGTTAAAATACAGTGAGCCATTGTAGACCACATGGTTAGTTCCTGCCCACTTGA-AAGGGAGGTTGTATGTCCTTG

a score=10309
s chr3           148858781 525 + 160039680 GTTATTGTTCCATACGTAGAGTTGGTTGTCTCTTGGATTATAATCCACTGCAGCAATATACTGGTACTGGTTGGGAAAAGGAACGTCCACGTACTCGCCCCGGCTTAGTCGC--GTGTTGTAGATGTAGTCAATGGTGTTCTTGCCTGCTTCGCTTTCATTGTCTTGGTACACTGACCTGACCACATAGAGAACCCCACATATCATGAAAGCATTGGACGCCGCACGCTTGTCATACGCTGTCTCCCAGGTTGCCTCGAATCGAAGAGTGTAAGGGTTGAGCTGGCTGATCACGATCATTCCATTGTTCTGCTCCGTGGCATAAATGACCCATAAGCCGTTCTCATCCACTGCGAGGTCAATGTCTGTCTTCCCACCCCATCTGTAGGGTGACGTATCGTGGTAGTTGGCATAG---------------TTGATGATAGCCTCGCCGCTCTTGATTCTAGTCCTCAAGTCAAACTTAACAATGTTTCTGGTTCTTTCCTTGTTAAAGAAGACGGCTCCATCATACACCACAAATCCAGTACC
s HiC_scaffold_1 193393417 504 + 233722169 GCCGTTGTTCCAGGCATACAGCGCGCGGTCCTTGGGGTTGTAGTCCAACATGGAGATGTGGGAGTATTTGTTCTGGAAAGGGATGTCGATGTACTCGTA--GGTAGAGGCGTTGGTCTGATAGGCATAGTGGACCTTGGTGCCCCCCGAGTAGCCGTTGGTG---------------------ACGTACAGGGTCCCGCAGATGATGAAGGCCTCGCCGGCGCTGCGCTTGGGGTAGCTGGTGTTCCATGTCTGCAGGATCTGCAGGGACACAGGGTCCAGCTTGCTGATGACGATGTTGCCGGCATTCTGGTTGGTGGCGTAGACGGCCCAGAGCCCGTTCTCGTCCACCATGAGGTCGATGTCCGAGTGGCCGCCCCAAGCATAGTGGTACATGTTGTTGTAGCCGGCGTAGTCCAGGCTGCGCGTCTTGAGGATGGCCTCG---------------GTCCGCAGGTCGAACCTGATGATGATGTGGCTCTGGAACTTGTTGAAGTAGATGGAGCCATTGTAGACCACCTGCCCAGTGCC

a score=141706
s chr3           148868811 6898 + 160039680 [encoded data, 7877 characters]
s HiC_scaffold_1 135533654 7428 + 233722169 [encoded data, 7877 characters]

a score=79856
s chr3           148877242 3922 + 160039680 [encoded data, 4331 characters]
s HiC_scaffold_1 135543134 3874 + 233722169 [encoded data, 4331 characters]

a score=22579
s chr3           148884191 847 + 160039680 GTAATTCCAAGTCGTTGTCTATAGACAAACTCATCCAAGTGCTGGAGAATTGGTGAAACACACCACCAGGACCATGGAAAGCAACCTCAATCTATTCTGCAGAGTCAATTCTGCTGAGTCAATAGACCCCAAGTTGCTTCTTCTCCGCATCAGAACTCCATCCTAATGGACCAATGGCTGATAAACCTGACACCACAGATAGATAAAA-GCTCTCGGGATCCACAC--ACATGGGATGAACGCACTTTCTCAGAAGCTGCCTGCTTGGATCCTGTGGGAAAGCTTGAGTGTACT-----------------GAGCAGCCCCGGCTAGCAAGCACTTACAGCAA--------------------ATCCCCAG--TCTCACAAAACATCACCTCAGATGAAAACCCAGACTCGCTATATTTATTGCTCTGAAAAGGCGAT-TAGCATGGAAGAGAGCTCAGGTTTGAAGGAGGATTGCATAAACGT----------TATTGTTGCCTGTAAAGAGAGATCAGTAAATGTGTACTAATTAAATTAAAGGAAAGGGGGAAAAACTTCCTAGAGCTCTGACATGGACACAGGGCCTCTTTACGAAGACTGATTGATCAATAAAAAGGCTGAGAGGTTTGTATGTCAAGGAGACTACACAGCAACAGAAATCTATAATCATGAAGTCT-------------GACAGAACCGTGGCTGCATTTTAATGGATTCTCCAGGCTAACGTCTG---AGCTTTGATATTTACCACTACTCATAACAATGTTCTCTATGTGGACTCTGTGTGTGTGGGTGTGTATCCTTTGTTTAGTTTATATGCAGTTGATATCTATTAGTATATTT-GAAAGTAAGTTAGTTTATC--AACTCTAAGTAACAGAATTGAACTCCAACATTATTGAAGAAT
s HiC_scaffold_1 135551117 873 + 233722169 GTAATTCCAGTTACTTGTTTTGAAATAA-CTCAGCCGAGAGTGAGAGAATTAGTGGAA-ATCCAGCAAGTA--AGAGAAAATAACCTAAGGAAATTGCATAGAG------ATGAAGGGTTAGTAGGtttgagttatttatttttccccatacGTATTTCATCCTAATGGACAAATGGTTGATAAACCTGACACCACAGATAGATAAAAAGCACTCGGGATAAACAACAGCAGGGTAAGAATGGAGTTTCTCAGAAATAGCTGGCTTAGATCCTATGGGAATGAATATATGTACTAATTAAAGGCAAGAGAAGAATATTGCCAACTAGGAAGCATTTATAGTAATGGAAGAATATAAAATACTAACTCCCAAAATATTATGAAACATCAATTTAGACTAAAAGGCAGATAGAGCTAATTTTTCACCCTTGATAAATGTTATAATGAGGAAGAAA--------TTGGAaggccatttttaaaaagtaacaactaTATAGTGTTATCTGTAAGGAGGTATCATTATATGTGTGCttactacatttaaaaata-------aaaagtcataaaGCTCTGACTTGGACACAAAGCTTCTTTAGAAAGAATGAATGATCAATATAAAAGTTGAGCAGCTTGTATGTCAGGGAAAGCACAAAGC----GAAATCTATAATCATGAAGTCTGCCAGAGAACACCGACAGAACTGTGActgcattttaatgcattttcttGGATGAATTCTGAGAAGCTTTGATATTCACCTCTTCTTAGAATAAAAT------TGTG-----TGTACGTATTTAAGTATCTCCTTTAAGTAATGTATGCATCATGAACGTCTATTAGTATATTTGGAAAGTAACTCAATTAGACAAAACACCAATCACATAAATT------CAAAGttatttaagaat

a score=29576
s chr3           148890018 1363 + 160039680 actttaaactgctgtaaaaactcactggaaacatactaagaG--------TAAGCAATTACTGATAAAG-TTCCAGACAGATAAACATTCTTTTTGACTAAAGAAAAG-------ACTTCAAATTCTCAAGAAACAAGCTTAGATTTGAACTCTTCCTTCTTATTTTCTATAAAATAAG-------GGAATGTGGTCTGAATTCCTATATATTCTCTACTAAGATGATATGCAAACTTTATATGTGGCAGAAGCATAATACAATATAGATGTTAACATAGGGGAGGAAAAATCTAAC-CGCCTAGAC--AAAAGCTTCGCTGAGGGCAGCATCTGCTCCCTTGGGGCAGACAGAAACTTTAACCCTCACAGGTTAACCTCACAGTAGCAAACACAGGACATGTGTGCACAtgcatctacctttgagtcatgattttgaaggcatcagggaggtagcagtctgtgttctccatttgaaaggggtctgcaTCGCAGATCTTGTCGTCCGTCCGACCGTAGTTCGCACTCTCGATCATGATGACGTCACTGCCCGGACATCGCAGGTCTATAGAATAACCCTCACAGGATAGCTCTCGTCTAACTAACCCGAATGGTAAGGCTGCTCTGCTGAAACCTAGGAGAGAATTAACACAGAATGTCAAGCTTCCACTCTCATATGAAACAGATTGTTTCAGCAAGGCATCTTCAAAAAAGACATGATTCA---TCACAACCAAGAGATGTCAGTAATTCA--TGTTTATTCTTAATTAGACATCTAAAGGTTACTACAAGATTCTTTCATACATCTTTATGTGGACTCATCACCCTTATTAGACATCTTTACAT--TACCTTTAAGCATAATTTTCTTTATAATGTATTATAAACGCAGGTA----------------------------------------------AATATCTTTTGTTAGGTTAAAT-TCGTAGATAAAT-----TCGGGAAGAACTGTCA-CAATGTGA-AGGAGTAAGACCCTGCCATATACCATCCTTACTCTCTCATTTTTAAAGTACACATATTAAGTGTCAGTCAGCATCACTATTATACAGCTACTACTTCATACTAGCAGTTCTCCCCACGATAACTAAAATAACCATGACAGGGAGAATTCTAAGGCATGGTAACATTTCCAACTTGGAGATACTGTTTGGAAAAGTGCCACCATTGAAGAGACTTGGGAGATGAATATTTACAGGAGACAGCA---------CTCAG------CCAACCCACTCCAATAAACACCAAAGAGCT----------AGGTTCTGCTA-------GTTACACAATCTGCA----------AAATAAAGTGA-ATTACTTACTACAGTAGCCAGTCTACCTGTAAA------------ACACAAATGC-TTAAGTGTTGTATGAAT---TACACAGGACACAGCAGGTC-----CAAGTGCT---------------AGAGAAGAATCTCGAACGGAATAAAAGGCTAGAATTTTAAG
s HiC_scaffold_1 135559329 1431 + 233722169 acctaaaactgctctaaaaactGAT---GTTCATTCAAAGAAAAAAGCCACAAGCAATTATTAATGAAGACTCCAGGCA--TAGACATCTt-----actacagaaaaatatttcaattttgaagCCTCAAAAACCAAGCTTACATTTGAActgttcttctttatttttcaatatgtaagttGAAAAGGTACGTATGACAAATCTCTGT-----CTAAATTAAAATG---TGTAGATTTGA-ATGTTGTAGAAGTATAACATCAACTAGAAACCAACAGCAGTGGGTAAAAATCTAATGTAGTTTGATTTACAGACTGAGATACGGGCAGC-TCTGTGCACTCTG--CAATCAGGG---TAAATTTGCACATCTGAATC---CGGTAACATGGGTTGAACACGT------AAGTATTTACCTTTGTGTCATAATTTTGAAGGCATCTGGGAGGTAGCAGTCTGTATTCTCCATCTGAAATGGGTCAGCATCACAAATCTTGTCATCTGTCCGACCATAGTTTGCGCTCTCAATCATGATTACGTCACTGCCCGGACATCGCAGATCAATAGAATAACCTTCACAGGATAATTCTCGTCTGACTAACCCAAACGGCAAAGCTGCTCGGCTGAAACCTtaaagtgga--aagaaagaaaactaaactttAA--CTCATGTGTAACAAATTGTTTTAATGAAGCTTTGTTA------ATATGATTCGTGTTTAGAGTCA--AAGTGTCAAATATACAGGTATTTATTCTTGCCT--atatcagaaatttat-------tttttctatgtatCTTTATTTGGACTCAT---TTTTATAGTATCTTTTGACATTATACTATCAAAC---ATTTTCTATATAGCCTAGTATAAACACAAATGGTTCTTTTGGAGTATGCCTAACATTTTCATCACCTTCATAAGTAATGacatattttatta---caaatattgaATATAAATCCTCATCAAGAACAATTTTTATTCATGCAATAGAAGAAAAGCTCTGTTATATACTAGCCCTACTTGTTCA--TTTAACATACACATATC-ATTGCTGACC--CACCATTAGTCTAAAA----------ATACTGgaaattttttcccc---aaataaaatACTTCTGATAGTGA-AGTGCTTATACA---ACACTTTTTCAACTT--ATACACT------AAAATTGGCATCATCAAAAAGATTTAGCAGATAGATGTTTAAAGAACACAGCATTACTATACTTCAGTGTAACTCAGTCCAGTCCAACAAGTTAAAAAGATctaaaaggaacaaaatttctCTATCCTTTCATTGTGTGATCTAAACATGCACATGAAACGTGGTGACATCACCTTTAATA----CCTATATAGTTCCAAAAGGAAATAATGTACACAAAGGTATTAACTGCTAGATGAATTTATATATGGCACACAGCAGATTGGAGATAAGCACTGTGTATATGTGACAGACAAAAGACTCTTGGATGGAATAAAAGACTAGAATGTGAAG

a score=38038
s chr3           148894541 4150 + 160039680 [encoded data, 4926 characters]
s HiC_scaffold_1 135563494 4469 + 233722169 [encoded data, 4926 characters]

a score=14681
s chr3           148906623 2505 + 160039680 ccacctggattccagctaggctttccaatgcttgccagcagagttatctggctt-----gccaactacagaacctgctcttcagtgctccac-ctatcaaatgggtgtaacaataggccccacaccctttcttgaggttttgtaaacactaagtaaatcacatttaaggactcagaCATAACT-----ACTGCCAAGTGTTCAGTTTTTCCCAACACATTGGAGGAGAAAAATGTCCTGATGTGTCAGCTGGTAATTCTGCCACTTGGTGCAGTCTCT---------------GAGAGGTCTAGATCCCATGTCCAACTATCCAAGGAAACAAGACTAATTGGTAAATTATACAGCAGACATAACTGA--------CTCTATGTAAATAGTTTGTGTATGATGAAATCATAATTGCAGGCAATTAGAATTAAGCTAATCCCTTTTAGGTCTACCT---CTTCTCGTGCTCTTCTTAAAG-----------CTACACTG---GTAGCC--AGGGCAGAAACACAGCATCCTCCCCCCCCCACCCCCCCTTACAAGGACTGAGTACATTCTACATACACTGCATATTATCTCAGTTCACATGAGGACTCTGAACAGTTCAAGCCAGGAATAACATCCGACCTACTTGCCGGCCTCTCCTTCCTTCCTTCCTTTCCCTGATTACAAGAA--AAGCCTTTCCTG------AGGGCCTCTCTCCATTGCAGCCAAGCAGTCCTGCCCTCCATTTCCCAAACA--------GAGGTAACCGCACACG-CAGGAAGCTCCAGCACTA---------GCCTAGGTCCCTCTCAGGAGTCCAGAACAGTCTTTGGCTTCAAATtt---tacttatttatttacttactttctatttatttatttaactattcatGGA--------CTAGTTACAAAACTCA-----ACATTAAACTCACTTTACAACTCAGCACAT-GAGGCTAAGAAGTATGTTATGTAAAGTCACATGACTCCAA-AGCTGAGAGAGACTGGCTTCATGCAGCTTTCACACCAGCACAGCTTGTCAGGTCCTATCAGGGCACTCTTAGGTTTCTAGGCCATTTCACCTGCACACTGCTA-------ATCTCACTGGCCAGCAAAGCTCTGCACCCCTCACACAAATTGATCAAAAATCTTTCCTATggagctggagaatcggctcactggttaacagagcatagtgctcttgcagagggctggagtttgggtcctagcaacattctaaggtagcttacagtcgctagtcacACAATTAGAAAATAATTCTTTTAAAGCACTAAATTAAATATACGAAGTGCACATTTAAAAG----AATGATCATTTTAATGCAA----------------CTCAAAGTATTCTATAAACCTTATTATTTATATTTCCCCTTACACAGTAACACTTTAGAATTACACACAATGGAT----ATTTTCTTCAGAAATATTACAGGAAAAAGATTTCAAAGTGACTTAGCAGCCAGTAAACATTGTAATGATAAGAACATCATGGCGTGGGGTGTGGCTGCCATTGTTCTGAGCATCAGTCAGTCAGAGCAGCCTTGGGTACCCGTGCCAGATAGCACATCAGTCACAGCAGCATGCCTTGGGTACCCATGCCAGATAGATGATCAGAATACAAGACCTCTAC-TGTTTCAAGGG--ACAAAATAAAGCGTTCTACAC------------CTTTAGTCACCTTGACTGTCACAGTCTAAGACATAAGGCCACATTCCTGAATCAATTTATCATCTTCCTTAAATGCCATTTTACTATTTGGGGGGCAAGTATCCCTGCCTATACAC-ATTCTGTGTAAGGAAGACCAGAAGTCGGTGTGGTGTCTTCTCTATGAATTGAGGAGAGAGCCTACATAGCAAGCTGTGAGGAGCTTTTCTAAGCTAGGCAC---TTTAAGGGAACTAG-GAAACACACTTTCGGGAGCTGGA----AAGAGCTGTGTGTGCTTCCTGCAGCCATTGTCGCTGGACCTACACGCCTGCATCTCAGTCTCCATGTTCACTGTCTGGCTGAAACAAAATAATCAGACCCTGAGGTggatgtggaagggcgcacctgagaccccagcacacggcggaaacaagcaggaagatctggaggccagggccatccttagctaccagtgagtccaagcgtagccggagctgcaggagagcttgtctcaaaagaataaacaaaacaaaacaaaaaactaaaaacaaacaaacaaacaaacaaGAATTCACACAAATACCTGCAACATGTTAAATTTCAATGTACACAGTAATGATCTGCAAAAATAAGAGAGGTTACAATGTCAAAAGTCT----CTAACAAT----GATGGGGGATTATGTAAGCACCTTTAATAGAAGACCCTGCTGCCTTCTCTAGT-ATGCCGAGGAATTTCTTTGTGTTATCTGTTTTCCTGGTACCCATCACATTATAGCTTGAATTTGTGTG-TTTTTGATTAGAGATGGAAAAGAAAGCATGCATAAGTATAGAAATGGTTTCTATTATGTTCACTATCTCCTCACAAAGAAATTACCTCATAAATACATATTAATAAGCCAAT-ATAACCAATCCCAT--CCAAACACTATGACATCAAATTTTAATTCTTCAA
s HiC_scaffold_1 135575417 2102 + 233722169 CCCTCTGAATTTGAACTAAGCTCCTCTGAACTAGCTA----AATGATCTTCCTTAGGGAGCAAACTCTA---------CTTCAGTCTTcctttctgtaaaatgggaaaaataaaaggccT---------------AGGTTTGAGAAAATTAAGTAAGTTGAAAATAAAGTGCTAACCGCAGTGCTTGAACTCTCAAATGCTCAATTTTGCC-AGCACACTG--------AAAAGTAATCATTTGACACAAGGCA------------GGTGCAGCTTCCTTACCATAGCTGATAAAAAGCTCTGGATTCCACTTCCAGGCAGCCAAGGAAACA-GCTTAATTGGTAAATTACATAGCAGATATAAGTGAATAACTCATTATATGTAAACAATTTACAGGTTATGAAATCATAATTATAGGTAACTAGAATTAAGCTAATTTCTGCTATCCCCATCTATCTTCCTTATactttctttaaaggaaaaaaagtactaTGGTGTGTGTACTCATAGGTCAGGAA-------------------AATTATCACTTGCAAAGACTTGGTATATACTAGCTATGCTTTATCCCA-CTTAATTCACACAACAACCTGGAAAAATCTA---CAG----AGTATTGTGGCTATTTGGTGCAttcttattctttcctttctcaatcTAGAAATAAGGAGTATTCCATGCCTACATAACCAAGCTACTCCACCTCGTCTCCAA--AGCTGTGCCAATCATTTCAACAATACCTCTGTGGAGATTCCTGCAGATACCACTTATCTTCAAAGTTACCTAGTTAGGCGTTGCTCTTTTTCATAAATACAAAACACTCCTCAATTGCAGAAGTAGCTGCTTATTAATATCTTTAC--------------CCTAAGCA-TCACAGACAGTGCGGCCTGTGGCAAGCATCCCGTATGTGTTAA--TCATCACAAAGCTCAGAGAATGGAGGCCAGGGAATATGCTGCTGAGGATTACATTCCTACAATAGGAATGAAGAAAAGGCCTCAGCCTTCTCACACTATACCATCCTTTGGTAAGTCTT----GGCTATTTTTTGGTTTCTGCACCGCTTCAC--GGAGCCTCCTATTAGATTACCTTAAGCACAAGC--AGCACTGTAACCCT--CCCAAACTCATCACAACTTTTTCT------------------------------------------------------------------------------------AGGTAT----------------------------------------------TTAAATTGAACACATTAGATGCACATTAAAAGGATACACTGATCATTTTAATAGACTTTTCCACAGGTTATTCTAAAAGCATTTTATAAACTAGGTT-TTTATACCTTCCTCT----AGTAATACTTTTA---TATACACAgtacttttgcattttatttggaAATCTGGTAGGCAAA--ATTTCAAAGTGATCTGAAAGT-----AACATTTTAATGATGCAAACATCATTGCAGGTTATAGTATTACAATT-TCGGGGGCATTTAGTTGTC--AGCAGTTTTTATTACtcatacaaaatg----atcaa------------------------------------------agacTATAAAACTTCTGCAGGATTCAAAGGAAATAGACTAAAAGGTTCTAAGACTTGGTATATTGCTTTGGTCACCTTTACTTTCACGGTGTCTAGCACAAAGTCACTTTGTTGAATAAATtaatcatcttattaaaattctAATTCATTACTTTGGAGG-AAATATGTTTGCTTTCAAATGACTCTGTAATAAACACATCAAA------------------------AAGTGAGTGGTAAG----CAAAACACACTG---------TTTCTAACTCAAGTACCGTTTTAGAGGAACCAGAGGAATGTGCTTTCTGGAGTGGGAAAAGAAGAGCT-TATGT-TTTTATGGAGTGGTTGTCACCTTCCAAAGGTCCTTGTATCTCAGT-TCTAT-TTCACT----------AACAACTT-------TCCTGAGCAAAAT-----------------------------------------------AAGATCAGGA---------------TATCTGCTA-----------------------------------TGTCT-----------------------------------------------------AAATATTCTTACATTCACT-------TTTTCCAATTcaatatat---------atgtacaaaaa-atGAGGTATTACAGTATCAAAAATCTTATGTAGATAATTTAGTACAGATAATTTTAGAATTGCTCTTGGTAAGAAATTTCACTATTTTCCCAAGTAATAATTAGGAATTTCTACGTGCTATC---------------------------ATTTGAATTCATTTGCTTTCTGGCTaaagatagaaaggaaaatatacatGAATAAAGAAGTAACTTCTACTATGGTCACAACT----------GCAATCATTTAATTAAT-----TAGACAAGCCAACAATAACCTATCAAATACCCAAATATTATAAGGTGAATTTATAATCTGTTAA

a score=87439
s chr3           148911614 4876 + 160039680 [encoded data, 5333 characters]
s HiC_scaffold_1 135578636 4843 + 233722169 [encoded data, 5333 characters]

a score=7617
s chr3           148917567 842 + 160039680 GATTGAAAGATGCAACCATTCTGGGTAAAGGAGTGTTCTGGGCGG---GGAGAAAAAATATCTTTAAATTCCTTTGTTATAAACTGGGTTTAGGGGaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCAACTTCAGGCTAATGATCTTCCATTTTGTGTACAAAACAGACGGGACAGTCCAGAATCCTTGACTCTTAGAAAGACAG--GAAGTACGCCTGTGTGAAAAACAATCCGATGAACAGAGAGGAGACAGCCAAAGACTAGAAAATA--CTGAAA--TAGATCACTCAGTG------AGAAACACCCCAG--ACCCCTCGTTCAAAGGGAACACGGAAGGACTCTGACCAGACA---GTGTAGAAACCAGAAAAAGTATCATTTCCACCTTCCAGCTGAGAAGCCGA----GAGCAGCATCTTTAAGTAAT----TTAAGCGTGCT----CTAGCCTATGAGAACTGGCTATGACATCCATGGGTCATA-ACTTCCTTTCTGCATCAGTTGC---------------CACAAGAAGGAACCTCCCTCCAGTTATTTAGCAATCTACTCGGTTCATCTCAGCAGCCACACCTGAAGGCTCTTCTGGCTCTGACCTGACTAACTCACCCTGAGGTAA--ATGGAGCTTCCGTAAACCTTAGCAAGGCTTCAAGAGCTGTCGCACCCACATGATGAATGTTCTAAATGGGAAATAGTCTAAGGGACTGACCAAGC----------ATTCAAACT---------TCAGTAGCAGGTATTTTTAACTTTCAACTACATGGACTCTAGTTTCTTTCAACATTGCTCAAGAGCATCCTCACATATTATTCCCGGGTTTGTTTAATAATGGCTGTATTCTACCCACAGTT--CAGTTTCTCCAGATTATTTCCCAA
s HiC_scaffold_1 135584843 867 + 233722169 gaCTAAAAGATGTCATCATACTGGTTAAGGTTGGGATTTGAGGAGTACAAcgaaaagaaatcttaaaattacttcctta--------------------------aaaagaaaatgctgaagTACTTAAATTTAAAGCTGACCAACTTCCATGTCA-GTACAAATCAAAATGGGCTGCTTCATGCCTTATACTTGTAGGCAGACAGCTGAAGCCCAGCTACTTGAGAAGTAATTCCCTTGACCAATA--AGGTATCTGAAAAGCAATTAATAACCTGGAAAGTGTTTCAACCAGCGCTGTGCAACGATAGCCGAGTGATCTTTCTTTGAAAAGGACAACAGTAGG---CTATATAGACACAGGTGAGGTAACTGGGAGAACTGTTTCTCTCATTCTACAGACAAGATGCCAAACTGGAGTATTATCTAAATGGCATCCTTTTAGTCTCACTGATACTAAT-TAGAAGAATCTGCAATCAAATGCagatgttttatatttaatttctacatCACTTGAGTTTTTCATTTGAAGTATAAACAGGAGTCACT-----AGAAACTACTAATATATGTGGCTCACTCAGAAAAATGCAGTTTAAGTAGGTTCTTATTCTGGGTTGAGTAATTAATCACTAAATGgttataaaatctttaaaaatatttaaaaggcttTAAGAGTTATTTAACACA---GTTGGTTGTATTTAGTGGAAAGTGGTTTAAATGACCACCCAGGACATAAGGGCAATTCAGAGGAAAGACaggtcaaaacaaagaattt---actCTTAG-TACAATGATTCTAGCTCCTTCAAACATTACCCATAAGTATTCATAGACATTTCCTCTGAGTTTGTTTAACAATGACTGAGTTTTAATTTAAGATAGCTGTTCCTCCAGA-TACTCCCCAA

a score=18650
s chr3           148919041 1542 + 160039680 ATCCCCAAGTTTCTCATCTGTAAGTTCAGCTCCCATTCATTCACTGTTCTTCCCAGTCTGGTCCAGCTTGGCGGTT---------------TCCAAGTCAATCTATTATCTCAGTGGCAAGCGCTGCTG-GAGACC--AGAGTGTGACGTCAACGGAG---ACAAGT-------ATGCTTAGCCTTCATTTCACTGTGAGTTTGATAGAGCTGCC-----TGAGAATGCATCTAAGGTCCTTTTAGATGGTCTTGGGGGAAGTATTGCATCTTCTTGAGAAT-------TGTGCA---TATATGTTGAAA-------------------------AGGCCTG-------------CTAACTTTCCATCTAAAGTAACTGAACAAGAGAGCAGTGGA---CAAACATGAGTCTAGTGCACAATAGGTACCTGTTTAAGA----------------TGAAAGCGGAAACCCATAAAGCATATAGCCGGGTATTTATTTCATGTTTCCCATGATGCCGCTCACTCTAGCTTCCAGGCTCTTTGC-TGGCATTGAGCTATCTTTCTGTTATAAAATAGTAGAAAAGAACAAGCTGGTAATTTAAAA-AGATACATTACAGCAACTCTCTCTGGCACCATACAATTTTAATCCCTCTTTTGAAGACAAACTGGTTGGAAAGTGACCGCTTCCTC-TCTGTCCCTATTGTCACGGCAAAGTAAAGGAGAAAGGTCCTCCTCTGGCTGCCAGGGGAGCCATTTGGCCT--AAGAATTCCAATGGCCGAAGAGAAGTGACAGAGTGATCCCTATGGTGTAAAAATATCATTTTCCTTACTTATTCGCAACTATAAATTGCAAGAGAAATT---AATGCATTTTCTATTTGGTGGATAAATAAATCTTCAAAGTCTAATTTCTATATATAAAGAAATCCTTTTGAAACCCGGATGACCAAAAACCAATGGCACTCATTCTTTATGATCTCTTCAACTTCAATGCAGGGATATTTTCCCTCAACGT---TATTTTCCAAACCTAAAATTTAGAACACATATTCATGGCAAGCTAAACCTCACAGACATAACCTTAAATATTTTGCAAATGTTTCCCAAAACTACATGCCA----TACTCAA-----CAAGACATTTATTGATTGATGAATAAATGTTAAGAAT-TCCGACCAGTTCACAAATAGGAACATGGTCTGTGTTGTTATGGT--GTTCTGCGCGTGTA--ATGTGGGTGTCATGGC-AGAGAAGCAGCTCTGCGCCT------ACACT-------------------GAGGACAGAAGCA----TGGCCTCCACAGACACACTCTTCCTTCTTTCCTGGGA-------------------------ACCTATGGCTC--CCGAAGCTCTCGCAAAGCTGACCACGTGAGAGCAAAGCTCCAGCTAAGAGCAGAAC-ATTCTTCAGGCTAACCACTACGTACCCAATA----------CATGGTGTCTTACTATCTATCGCAAGCCAGTGAAACATT-TAGATTGTGTAAGAAACATGACTACTCATTTTTAGAAGAAAAAGTTAGATAAAACATGCAAATATA---TTTCCTCCCTTTCAACTGAGATCAAATTGCTGGTGTCAGGCATAACTCATAATTAAACATACCTGGTAAACATTTT-AATGATTGTAATTGCTATTAGGCAAATAAGTTACACTCAATAACTTCTAAAGGCAATATAT
s HiC_scaffold_1 135585716 1628 + 233722169 ATCACAAATATATTCATCTGTGAGTTTTGTTTCTAATCCTAAAGAG-----CTAGATGTAGTCCAACTGACTGACTAACAACTGACTAAGCTCCAAGCCAATCCTTTATCATAGGTATAGATTCTTCAGAGAGGTTTGAGGGTATGA-GTAAAAGCAGCAAAAAAGTcgttttcatatttgtttttcataCCATTGTTAGTGTAACAAATTTACTAGGTTTAAGAATATGATTAAGGTACTTTAAAATGGTTTAAGGGAAA------TAGcttctttcaaatatatatatatacaaaatatatatttaaatcacatctacaaaaatacatatttaaagcataaatgtatttaaaactaaCTTTTGATCTGAATTAATTCCTCTAGAatccaataaagccaaaataccaaacta---tatgatgtattccttttaaagaaatattcctAGTATATTAAAAATAGGG--CTATAAACAATTTAGTACTGTATTTGTTTCAAATTTCCCATGATGCCACTTACCCCAGCGTT--AGCTTTTTATGTGACATTCAGCTATTTTACAGTTCTAAAATAGTTGAAAAGAATGACCTGTTAATTTAAAAGGGACATATTACAACGTCTCTCTCTGGCACtatactattttaatttcttttttgaagatAAACCATTTGGAAAGTGACCATCTGCTAGTGTGTTAGTAATATTCTGGCAAAGTACATAATAAATGTCCTCT----GCTAAGAAGAGTATCATTAATACTAAAAGAAATTCAGGTGGAAAATAGCACTAACAAATTGATTCA-GTGCCACGAAAAAGCCTctttcattaattattttcaacctcaaataaaacaataatttttaaatg---ttttcactgACAGGATAAATACATCTTCAGGAACC--TTTTTAGACTAAGGCAAGAAatgttaaaaaccaaa----caaaaatcaaacttcatCAGTCTTT------TCATCTGCTTACATACAG----ATGAGTCCCCAACATACCTATATTCCAAA------------AACA-------GTAGCTTGTT-----TCACAGAAAG-----------------AAACATTTTCCCAAACTACATACCATTACTATTCAATGATCTGAGACATTTgataatttacaaataaattttaagaatgttcAATTGACTAACAAATA--------ATCT---TTATTAGAGTAAATTCTATGTATGTATTAAGTAGGTCCTCTAGCAAGTGAATAAGCCACGTAACTAATAAAAAACTTCCATACAATATTATGctagaaaagaaaggcaaagcaAGCTATCATAACAATGAACTTGGAACATAGGAGGGATATTTAGGTAGAACATAAGAGGGATATTTATGCCTCTTCTGAACCTCCTGGAAAGCTGA---------GGAAGATTTTCACCCAATTGCAGTACAATGTTTAAGACTAAAAactataaatttattaattacaACTCCCTAGTATGTTA----ATATAGTAAACAAATGGAAGACTAtggatttttatataaatattcctatccaatttttaaagtacatacatAAGTAAACATG---ATTtacacttttcttccttttgagtaAGACTGAAGTGTCTCTGTCAAGCCTGCCTCATAATT-AACACATCAGGTATGCACTTTAAATAGTTTTAATTGACATTAAGTAGATAAACCATACTTGACCACTGAGGAGGGCAAGGCAT

a score=41919
s chr3           148920939 2133 + 160039680 GATGAGTATTATTTGGGAAACAGGA-GGCAGTTGTTCA-TCTGCGTGCTGTGTCCTCCTAATGCAAACC-GATGTGCCTTTGTTCTGACAGCAGCAAACAGTTGCTAGAAAATGAGCCACCTTCCCTGGGCTGACTCCCATTATGCCACACTT--GTTTGACAAGGTCACTTGCCGCAGGGATTTGTGGGGAGAGAGAACATGCAGCCTGCTGAGTTAAGAGTTTAAGCCACGGGCAACCAAGATATTTGTGTTTTGGTA-------GGATGTGTACAAAAAAAAATTATTT---GCTCATTGAGCAAA----AAGGCATTTTAACTTTAACATTTTCAGAAACCTAAAGTTTT-------AAGTACAC-----TCGTAGGGTTCCATTGCCCCCTTTCCTTTGAATTCACATAGCAAATGTATAAAACACTGACTTTCAAGATAACATTAACAAGCAAATACTAATGAACAATACCAAGTG----GCCCATCT-CAGCCTTATAAGGAGACCGCGCCTATGGAATGAACA---AGTTTGGGGAGGTGGGGGGGGAGGGGGGCACTCTCAGGCTGTGGGAAAAAC--ACAGCTTCTCTTTCACTTTAAACTCCATCAAGAATTCTATTTGTAATTAATTTTATTAGGAGGAAGATGCAGAGGACCCCAAGGTCAAAAACTCCATAACT-----CTGTGTTGACTTTTACCTCTAA--------------ATTAAACTC----------CATTAGACTGTTTTACCCATAATCCACTCGTGATCCGAAAGGTGGAACTGACTC--TATGAA-GCAAGGCTCACTTTGAATTTTCAGGTTCACGTATGATCTTTGAAAGGGCATGAGACAGTGCACAAGACAACAATCTCAACTAATTAAGTTCTTTCCATACA-GAGCACACAGCAAAAGTGGGATGGCCAGGTTATCATGCTCGGATATGGACGGGGTAAAACAGGAATCATGCTTTTGTGGTTTTGAAAGTTAAAAAGTATAACTCTTTTTCATATTCTTAGGGGGAAAAAATTATCTTTAATGTCACCTAAAAATCTAGCTTTTCGTAGTTACCGACAGAATTTACCATGGTTTCATTTTGTACCTCCACGTAAATTAAAGAA--TTTGTACATGTTCCTCCTGGCCTTGATATACAGCCATCAGAGGGAGTGTGAGTCAACA--GTAAATGTTAATACTTGACTCATGCATAACTAAAATATAAC--ATTATTTCCTGTAACTTCCAGGAAGGGAAGGTCTTCACTCTTAAGAATTCCGTGAGTCCATATGGAGAGGGAAGAA-----GAGATAATGTTATATGTCATTTGACTGTAACCTCTGCTCCAATATTACTAGAGTCGCATTCACAGAATGCGCTGTCCGAACGTCCTGCAAA--CCAAAATACTA------AATAAAATGTATTCGTTCTGGCCTCGTATAAAAGAAATTCCACTTGTGAAGCCATGCAGAAGGCAAGAGCTAGGCGAGTGGTTCTGTCCTTGGACGGCCT-CCCCACTGGACTCGTTTGCGGCCATGCACCTTGACCTTCTGCCTAACTGGGGTGTTGAAGGAAAATGAGATCTTTTTCACACTTTAGTCAGGATTAATTCAACACTGTCAAAGCATTTGTACAGC-CTCATATTTAGAGACATCA----AAAACAGT----AGGTACAACGATGGAATCTTCTTTGAATTACCCAGTGATGACAAATAGTCATATAATA-----AAACAGGAGGAGGCG--------AATGGTAATCCCGGGTGACAG--GCAGCTGTCAATCAGAGATCCCAACACTCTGGTGGCTCCCTAACTGGAGCTCACGCAGGACAGATTGTCAGCTTCATTTCTATTCAGAGGCAGCCAATCACAGGGACTCATTTACATCTCTCCTTTTTCCCTACAGCATGTTAACAGCAGGCGGTCCACCCATACCATCTTTGAAATAGGTAGGTGGCTCAAAATGCCTTCAGATTTCAGTCAAGAGCCGGAATTAAAAATAAACTGGAGCTTCCGTGTCACCGTTTTCTGCTCTCAG------------AGAGTAAGCAGAGCGC---GTGCGCATGCG---CGGCTCCTGTTTTAAGAGGGGCCTCCCTGCCGAAACCTGCCTCCTTTAACCCAGGA-GCTTTCTCAAGAGCTGAACATCACTTAAGCTCACGTA---GGC--AAGAACAAGCAAGACATTTTAAGTGTTTTGGAC--TCTTCTGTAACTTCACGTGTGCTTA
s HiC_scaffold_1 135592735 2125 + 233722169 GATAAGTGTTATTAGGGAAGTGGGCCAGCAGTTGCTCACTCTGCCTGTCATATCCCTTTAATGCAACCCTGACTGGCCTCTGTTCTGACAGCAGCAAACAGCTGCTTGTAAAGGAGCCACCTTCCCTGGGCTGCCTCCCATTACTGCACACTTCTGTCTGACAAGGTCACTCGCTGCAGGGATTTG---GGGGACAAAGCGTGCAGCCCGTAGAATTA-GAGTTTAAGACACAGGCAATGCAGCTATTTTTCTTTGGGTAACACAAAGCAAATCAAGAGTAAAAAATTAGTTCCTGCTCATGGCGCAaatcacacttttttttaaaagtatcaattTCAGAAAATTGAAACTGTCTaacaaatgtatataatttttgcaGAATTTTG-------CTTTCCTTGAAATTTACATA--AGTTGCATAAAAGATTTAAGCACAAAACAATATTATCATGCAAATATGAAT-AACAGTAAGATGTGAGTTGCTCCTCTGTTATCTTACAGTGAAAAAGTTCCTGTCAAGAGGACAGcaaatatagaaatatgtttaGAAAAGGTGG-------------TGACAAGATCTTACAGCTTCTTCTCGGTTatagatttcattaaaaatttaatttataaccACTTC----------------CAGGGATCTCCAGAATCAAAcatttcataattatattttatgttga-ttttacctttaataaactttatataaattaaaCTCATCtaaatcttattaaaattttacattgacAACCCACCAATGTTGCTAAAGGTATAATTGACACAATATAAATGAGAGGCTCATCTTTAATTTTCAGCTTGGTCTATGATCTTGGAGAGGACTTAAAGCTATG----GCATAATGATCTCATAAAATTAAGTTATTTTCAAAGATAAGCACGCAG--AAAGCAGAACGGCAAGTTTTAAGTGCT---------ACTGGTGACATAATGAATTATAACTTTATCGTTTTGAAAGTTTAACATT------------------------GGGAAaagat---ctctgaatttctttaacATTCT-----TTGGTAAT---------AATTCATCCCCATTCCAacttttatttacatataaaattagaAAGCTTTGTACATTTGTCTCAT---TTTGGTACTCAAC-----------------ATAAACACTggaaattttaatactttattaatGCTTCATTAACATAAAActgagtattt----ttgtttttggtatatttaatttttctttggtaTAAATTAAGTATTTCCATCCTGAGGggaaaaaaactaagaaacaagTAATTATTTAAAGAGACTTTATTCTCTATTCAAACATTACAGGAATAG---TCATACAATATAATATCTAAATTTTCAAACAATTCCAGCCTACCACCAACTAGTATACTGAGTTTGTTTtcg------gtagaagaaatttcaattcTAAAACTATTTCTATCACCTTAATGTGGTCAGTGTTAGACACATTGGAAAGCTTACTCCATT-------TTCCTAGCCATATGCTCCAATCTCATTTTT------GATATTCCAT-AAAATGAG---TTTTCCATGTTTCAATCAGAATAACCTCCATACTGTCAAAGTACAAATAGCGTGCTCACATTTACGTGCACCATATTGAGACTGTTAAAAAGTATCATAACTGAATTATAATCGAATTATCCAGTGCCAGCAAGTATTTGCAAaacatacataaacaaataaagacACAGAGCTTAATGGTAACCCTTTATGACAGCTTTCACTTTCATATAAAGGTTTGAACACTCTGGTGGTTCACTATTAAGAGTATAAGACAGA-AGATTTTCAGCTTCATTTATATTCAAAGGCAGCAAATCACCAAAACTCATTTACATCCCTCCATTTTCCTTACAGCATGTTCACAGCAGGGAGCCTATCCACGCCATCTTTGAAATAGGTAGGTGGCTTCAAATGCCTTTATATTTCGCTTAAGagcatgaattaaaaataaacttgagcATTAACTTCATCATTTTCT-CTACAAGGtgcaataatacaaaataaacatagtACTTAGTTTGCTCTCATTTCAATCTACATTTCATACAGCAGTTTCCTACCACGAAATGCTCCTTTTAATCCTGAATGTTCTCTAAAGAGTTAAGCAATCTTTAATCTGATGTATCTGACTAAAGATCTcataagaaattaaaagcatttcTGATAAtcttatttaactttatttttgctCA

a score=9250
s chr3           148924942 898 + 160039680 AAGATTTAAGGAATTCAAGT-TTTCAATTTAGATAATTAGGAACATGTGAAAGCTTTTCTACAGATCTTCAGTTTTAACCAGTATTGAGTTACTTCCaaagaaaaaaagaaaaaaaattaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaaaagaagaagaaaaaaaAACACACGCTATTCCCACTATTCTCTACATTTTCTGCTCCTATG-ATTACA--GCTTATGAACAGACTCCTCTGTTGGTGTGGATGGAATTAGCCATGAGTAGCAGGCTAACTCATGCTAAGACTTTGACTCTACACAGATCTCATGGGTGCTGTGAAATTTTTCACTGTTTCATACAGAGAG----------TTTTCTTGTTTAATTTTGCTATGCATCAGTATTATCCTGCTT--AAGGTATACTGGCC---ATATGCTAAAACACAGAGTCAA-TGGCCAGCAAGGCTTCATACTGGAGAGATCTGAATATTTAAGGAACCACAAAGGAACTAGAAAGTACACTTGGCCTCAT-AAAGAGTTAATTTAATCTCCCTTTTGAAGA----AAGCTGCCTATGTAGATAAACATGAAGCGATCATCTAGGTATATGTGTATTATCCAATGATAAGTCATTTCGTGAATTTCCAATTCGCCAATGGCTTTGATTAATACTCTGACTCACAGTCACCCTTTGTCTAAACGACGGTGAGACTGACTTTTATTATTTGAATAAACTAGTTATAAACGATAGACTAAAATAGTC-ATCTATGCCTGTGTGTCACTA-----CTCAGT-TATCCAGTTATTATCTCCGCTTGGGATTTTTCATGGCTGGGAATCAATGTAGACAGTGGGCAGGTCATTTATGATAGAAGAAGTGGCCGATGTTAGACTGCTTTATTggaggaggaggaggagga
s HiC_scaffold_1 135596671 774 + 233722169 AAGGTTTAAGGAATCCAAGTGCTTCAGTTTAGATAATTAGGAGCAAATGAAAGTTTCTATACCAATCTTCAGCTTTAAGAAATGTTACATTACTCC-----AAAAAAGTATCTATAAT--------------------------------------------------------------AAACtacattttattc---ttcatttaaaaatctttcataaaTATGTATTAGAAGGTTTATGTGCAGAAAGACACACCAATATGTATAAAATTAAC--TGAATTAATTGGTCTTTAATAATAAGTCTTTAATTTTATACATATCTCACAAGGGTTAccaa--tttttatcatttcataaGGAAATGTAATAATTCTCTGCTTATTTAGTTTTAACATGATACAGTATTCTACTGctttcaaaatacaataaacataatattttaaatca-----tcaacTGGTTGGGAAATTGTGATAT---AGTGATTTGAACATTTAagtaaac---aaataattaaaaattaaacctggacTCATGAGAGCTCTAATCAAATCTCCCTTTAAAAGCTGCTAAAATGTTTATCTAAATAAACA--AAACCCACCTCAATGTGTAT-----TTATCTAATTTTAAG----------------CAACACGTCA----TTTTAACTGGTAATTTA----------ACCCTTTCTC---AAGAAAGTGAGA--AATTGCAATTAT--------ACTAGT--------------TAAAATATTCAAACTACACCCATATGTTAGTAGCTATcacaatgtttttatttgtccACTCTGATGCGG---TACTATGGTTGGGGGTCTTTGTAAATGGTG---ATGT-ATTCAGAATTAATAACGTTGCCGATATTAAATGAATTTCTTGAGCAAAGAACAGCAAGA

a score=22949
s chr3           148929953 1272 + 160039680 GACAATCACATCAAAGAAAATGAGGAAACCCCATTTTCCCATTTCACTGGCTGGAA----ACTTCCATAATAAAAAGATATTAAAAAATGGCACTAATCGCAGTGAGCGGTACCAAATAATCACGGAGttaaaaaaataataataatactaaaaaaGTTTCCATTAACATCTACTTGCCAGTTCATTCTCTGGTCCAATATTCTACACAAGGCAGCCATAGTCCTTCCAGAGAAAACAAAAGAAGCTTGTGTCATAACTACCT--CAATGTTGTGGGAGCAAACACTGGGTATTTCTGGAGAAGGAACAGACCCTCACTAAATCCATATGTATTT-CCCAGGGACATGCTGCAGTAAGGATCCTCATGTGGCCTTTATTCATCCGCCCCTATCTAAGTCTCTGTATGTGACAAGCCCATTGGCTCACACCAGCACCTCATTTACAGTTACAATCCACAGACTCGAGCCCTGAGATACACAGAGCATTGCCACTTAGGGACATCGATGACTGTTTCCATAGCA------------TTATGGTCTGCTAAGG-ATGCTAAGTAAACAGTGAGGGATAAAGCTCAGAATGTTGAA-AATCAAACAGACTCGGCACACGGTCTCATGGTGACTTACACTAATGAAAACCTGAACTCCAGGATTTTTAGTTCTCCTCACAAAGTGGATGCTATTTGGCATCAGGAAACTGTAATTTTTAA-TGCCGGTCCTATCAACACTTCAGATGGCTGAAGGAAAAAAATATCTGCTACTCTTCAGAGTAATTTAATCTTGGTCCTAAGGAACTGCAAGACTCTGAGAGGTGATTTAATACTTGTGACACATAATTCAATACATTTAGGTCAAATGTATTGACTTCTAATCTTTTCAGACAACTCCATTAttttttttttttttttttttttttttGCTCCTAACACTAAATATATACAACTCAACTACCAGGCTTTCTGTGTGGGAAAACATGCTTATCTATTCTGCAGCGGGCTCTCTCTATATGATACCTCATTTCTTGATTTTAATTGGGCC-AATATAAACAATTAAATTTCAATTTATACTAAATCAAATTTAAACAACAGCACAAGACTGAGGTTTCCCACCCAGCTGCCGCTTGGCTGCCTGAGCCAGCACAGCCCACTTCCAGCCTCCGAAGGATTTGCCCAGAGGGAAGCCAGTGCTCTCTGGGTATTGCCTACGGTCCTCCAGTGAAGGATCTGGCCTAGGCGTGCAGAAAGACGGCCAACCATGATTTAAAGAACTTTCTCCAGATTGCCAAAGA
s HiC_scaffold_1 135601749 1144 + 233722169 gacAACCAAAACCATGGAGGTGAGGTAATCCCATTGTCCTACTTCACTTGTAAGAATGAGGCTGTCAAATTAAATATA--------------------CACAG---------CAAAACaatcacagaatttttaaa----tagttCTATCTAATAAGCCATTGTTCAGTTCTG-------GTACAAGCTCTGGTACAACATTCTGAACATGTCAAAGACAGCTATT------AgtgccaaaaatattttttctatgtatGGCTGTCAATGCTGGAGGAAATGTAATAAATTTCTTCTAAATCAGAAACAGGTCCTTACTAAATACGTGCATCTTTGCCAAGGGATACGCCT--------ACCATCACATACATCTTAAATCTCTGCAA--AACAAAATCTTCATGCTTGACCAGATCTGAGGCTCGTATTGG----------GCAGT------------------------AAATGTGAGGA------CTATTTAGAAACATGCATGACTTTTGCCATATCAATAATGACATGTCTATGGTACGTGAAGATATgctaa--agtctttttaaaaaacaacttgaaatactaaataaattaaCAGCATTTACACA-GGTCTTAcaatgatttataattttttaacacTAACTTCTACCATTTTTAGTTTTCCCTCT---GTAGATTGTTGTCTATATCagaaaactgtaattttaaagtGTTACTTGTATAAACactttatgtg----aaaaaataaaatacctgttGCTCTTTAGATTAGTTT----TTGGCACTAAGGAACTAGAAGGCTTTAAGAGGTGATTTAGTACTTGTGACATATAATTCAGTGTGTCTGGGTTAAATGTATTGACTTTTAATCTTTTGTGATACCTGTATTGATTTTTT-----------------------CTATAACTAAATATATGCGACCGAACTACCAATCTTAGTGTGTGAAAAACTGTGTTTTTCTATTCTGTAGCAGGCTTGATCCATG-GATAGGCACTTTCTTGGGTTTAAGTGGCCCCAATGTAAACAATTAAATCTCAGTGTACACTAAGCCACATTTAAATATCAGCAAGAGACTGAGGTTTACCA-TCACCTGCACCTT--CTGCTCTGCTCAGTACA--CCACTTTCAGCAACACAAGAGTCATCACAAGAGCAAG-TACTTCATTTAGGGCA--AGTCACAGTCCTCAAGTTTGAG---------AGTAGAGCGTAAGGACTGCCAAAAAGGATTCTGGGGAATATCTTTTAATTTCCAGAGA

a score=6599
s chr3           148932305 551 + 160039680 AGCTACACCTTTAACCTAGAACCTGCCCAGACATCCTGACAGCTCTGATCAAGTGGTAGATGAATTCCTTAAATTGATTTAA---GACCCAAATCATTAACTCACTTGAATACCTAGCTGTGTGATAAAACCCTGATAGTTAATCATCCAATTAAAATGGCAGTAACGTGTGCACATTTCCTAATATTGATGAGAATCTGTAATAAGAATTAAGAAAACAAGGAGAAGCCAGGCACCTGGAAGTCAACCGCATACC--------TTGTGAGCCAGAATGAAGCCGGTGTCTGA---------GAGAAAGGAGAACTGGGCAGTGGGTACCAGGTGTGAAGACTGTATGCGGATTCTAAGGCAGAGAGCACACACCTCGAGCTTTGCGATCTGTC----TAGAACTAGCACAAGAACTGGCTCCATTCCAATCAAATGTTTAAACCATGTTAACTAAGGATGCTCGAGTT---AGAGAAAGT------------------------------ATGTATATGTATATAGACAGTGTGTTTTCCCAAAACACCTCTTTCGTCCTGTTACCACAGCAAA--CAATAAATTCACACATCACAGAAGTATAAACAT
s HiC_scaffold_1 135604955 575 + 233722169 AGCAATGCCTTTAAACTAGAAAAGGCCATGGCATTCTGAGAGCTTCTATTAAGTGCTAGATGAGTTCC-TAAATAGACTTAATATTACTGAAATCAGTAAAATCTTTGCAAAATTAGC--TAGGATAG------GATGCTTTGTTATTCCGTAAAAACGTCTA-AACATATAcatattg--tgaagataataaagATATGTAATGAAATTTTCCAAGATGAACCAAAGTTAGGCAATGGGATGATAACTGTATGCTATCTTTTATCACAAGCTTGA---AAACTGATGCTTgaagatgaaataagaaacaagaaagtAGAAATGTACAAGAGGCaagtagat----------ttttaaatcatGGATTCTATTCTATTAGATTTACTTTATTTCTCCTTAGAACCAACACAAT-GTTGGCCCCTTACCaatctatt--------cttattttttcaagATGTGGGAGTTTGAagagaaatttgaagaaaaactCTACTCACCAAGAACTCAAATTTTAGATTCCTAGACATTAATCTTTCCCAAAGCAGCTCTTGTATCATGTTACCACA-CAAAGTTACTCAACTCATACAATATATGACTATAGAGAT

a score=18086
s chr3           148934772 699 + 160039680 CAAGGACCATTCTAAAAATAT------AACAATGATCTTGCAGTTGACAGCACTAAG--TGAAAATTAACTGCTGAGTAAACACACAGAAACA---TCTCATAATTGCCTGTGTCCCTTATCTTCATCTCC-----CATGATAAAGCTGTCACAGGTTCTGTTTTGTCTTCATGTCTGGTG-------GCACTG-CTGATC-----CAAGAGCTC------------------------ACTCTCAAGTTACACATGGGGCTCTACAGTTTTTTCT-----CCACATATGCAGTACATTTTTAAGTTACT------TACTAAGAA---------AGTAGTATTTTCAAACTACATGATAATTTCTGAAATGTATGTGTACTAGGAAGAACAAAACCTTCCTGCACACAAGCCCTTCACCAATGTTGAATGCATGAGAAGACAGTGGTATTGTATGAAGGCTGCCACCAGAAAGAGCCATCTGTGCGCTGATAAAGG-ATTTCTAACATTGCGTCTATGTGGTGCCAAGATATC---TAGTCAATGCAATTAAAAAAGCAAGTTAAATAAGACGTCTGGCACCAGAGAC-AAGAGCATATGCTGAATGCTGTCTCTTCCA-TTTCCCAGCATGCTGTCTGGGGCTGGGCAGACCTAGCTTGAGCGGGATCCGTGTTCATGCAGGCATGGGCCTTTACTGTCGCATCCT----------------TCCTTTAAACCA-GGGTAGTCAACGGTCACTGTGGAGGCATTG----------AGAAACGATCCGAAACCAAGAAAGGAAAG
s HiC_scaffold_1 135607869 774 + 233722169 CAAGGGCTATTCTAAAAATATCAGTGGAACAGTAAACACTTGGTTGAGAGCAAAAAGAGTGAAGACTAAGTGCTGTatatacacaagaaaaaaatctgtcataCTTAGTTATATA--TTATGTGTGTGTCCGAAGACAGCATAAAATTGCCATAAA--------------CATTTCTGGGGAGGATGGGTGCTGACTGATGGAAAGCAAGGACTCCCACACTCTCCACCATTGTACTAAACTTTCAATCcatatgtatg-ttttaaaatttttcttagttACAATATTTCACTCGTATTTTAAAGTTATCATCatatagaaagaactcaaaaatagtAGTATTTTACAATCACAAAATAAACTTTCAATTGTA------------GGAACAAACCCTATGTGCAAACAAGTTTTCAATCAATGGGGAGTTTGAGAGAAAACACTGGTACATTATAAAATTTGCCACAAGAAAGAACCATCTGTGAGCTGATAAAGGCATTTCTAACGTTATGTCTATGCAATGCTAAAATATCTAGTAGTCaagggaatttaaaaagaaagttaagtaaGACGTCTGGCaccagagacaaaaagcataTGCTGAATGCCACATCCTCCACTTTCTCAATAAGCTGTCTGGTGTCGAGCAGACCTTGCCTGAGTGGGAACAGTACTTGCACATAATGGGACCTTTAATATCATTTCCTCTTTACATATTCACTGCTCTTTAAATCATGGGTGACCAA--ATCACAGTAATCATATTGCATACATTCTAGAAACAttccaaaacatgaaataaaaag

a score=80169
s chr3           148938445 5320 + 160039680 [encoded data, 5842 characters]
s HiC_scaffold_1 135611146 5147 + 233722169 [encoded data, 5842 characters]

a score=197426
s chr3           148944378 15781 + 160039680 [encoded data, 17881 characters]
s HiC_scaffold_1 135616702 15665 + 233722169 [encoded data, 17881 characters]

a score=65836
s chr3           148961052 4431 + 160039680 [encoded data, 4970 characters]
s HiC_scaffold_1 135632983 4436 + 233722169 [encoded data, 4970 characters]

a score=625399
s chr3           148966290 32415 + 160039680 [encoded data, 35404 characters]
s HiC_scaffold_1 135638590 31394 + 233722169 [encoded data, 35404 characters]

a score=4283
s chr3           148981868 62 + 160039680 GGAGACATTACATCCGGGCTAAGAGAGACCTAAATTTTACCCTCAGGCAGAAATCTGGTTTA
s HiC_scaffold_1 115073671 62 + 233722169 GAGGAGATTGCATCTGAGCTAAAACAGGCCTAAATTTTACCCTCAGGCAAAAATCTGATTTA

a score=18930
s chr3           148999640 878 + 160039680 CTTTAGCTGACATTGGCAATTAGAAGTAAAACGACCCAGAAATCTTCCAAGAATATATTTATTACCA-------TATAAGCATACACACCATTGTTACTTATTAACAAATGGAATAAATTTACTTAAATAGCTTGTTTTGCTCAGTCCACTGAAGTATTTTTGTAAGCTATTTGTAAATTTC----------ACAGATTGGTGATTGCAATCAAAATTTGAGTGATTTCCAAAAATTAACTTAATAAAAATGTTGTATTTGCATGCCTATGTTCTTTTTAGTACAGAACACTTTTTAGTAACATCACAAATAAGGGCAATTTGTTGAAGGGGTTTCTAGTGTTTGCTTTAAATGATTTTATTGTTTATATGCATATATGTACATGTGTGTGCATGCACACGTGCATGTATTCATTGG--CATTTATACCAAGTTCAGCAAAG---TTGAAATGGTGGTGACTTTGCCATTTCAAAAAGAAC----------------AGCCTCTCTC-CTTGGACC-CTCCTGTCCCAGTGACCTTCATGACACAG-----------GAGACCCTCAGA---------TATTGTACTCACC---GGGACTTTTCACTGTCTCTGTTTCAAACCTCAGCACTCAGGATTTGTTTAAAGGCAAAACATTTTGGACACATTATGCATTATGGTAAAACGCATCATACTTCCATCTTGGCTCA-CTATGAATTACTAATTTGTCAAGGTCAGAAACCTTACATCCAGGAACCGGAAATGCAAAAATACATTTTTTAACATTTTTGGTGATTTCTTTTTTTCGGCTTGCCAAATGACCATAATTTTACAATTTGTATTAATGTTATCTTAAAGAGCAAATTAATTAATGGAAATTTCCAGAGAAGTA--------GACATTATGCCGTCACTTTGCATGCTGGCTTT-------GTTTCACTTCTTGCTTTT
s HiC_scaffold_1 135671310 865 + 233722169 CTTTTGCCAATAC-AGAAATCAGAAGTCAAAGAACCTAGAAATCTTATGTGAATATACTTATCACAACTGTATGTATCAACAAACACATAAAT-TTACATTCTAACATATGAAATATGTT------AATAAATTTGCTGATTCAATTCATTGAAATATTGTTGTAAGCCAcatgtaaaattttcatttctgtacaaATTAGTGATTGCAATGAAACTGTGGGTGTTTTCCTACAATTAATTTAATAACAAC-----ATTTATATAAGTTTGTTCTTTTAAGTGAAAGGCA------------------AACACAGGCAGTTTGTTCaaggactttctagcttctactacTAATCACCTTCTTG------------------AGTGTGTGTG---GGAGAAAGGTAGGACTTCTTTGAAACACTTTTTCAAGGG--AGCCAAGAAATTCAAGCTTTTGTG---TTGCTGACTGAAAGCTGACCGATCATCCTGTTTTCAACCTATCTCTCTTGTACCATTCCTGTGCCAATGATTGCCATAAGACGAAATTGTGGCCAGGGAACCTCAGAACTGAGAATCAGTGGGCTCCTCCGTAGGACTTCCAAAGGTC-ATGCCTTGTACACTGGCACATTAGTCTTATTTAAAGGCAGAACATCTTTGACAAATTACATATTATGCTAAAAAGCGCCGTATTTCTATCTTAGCTCATTTATGACCCACTAAGTTGTCAAAGCCTAAAACCCTACATGCAAGAGCCAAAA-------------------AGTATTTTAGCCAGTTTTAT--------CCTGCCAAATCACCAGAA------AATTT-TATTAGTGTTATCTTTAAGAGTaaattaattaatagaaatttccAAGGGAAGAGATGCTTTGACTTTCTGCTGTCAGTTTAAATGCTggggttttggggggttttttttttttttttt

a score=68389
s chr3           149004877 3793 + 160039680 [encoded data, 4162 characters]
s HiC_scaffold_1 135678319 3630 + 233722169 [encoded data, 4162 characters]

a score=39925
s chr3           149016599 1782 + 160039680 AAGGGTTTCATCTTCCTGTCC-AGCCTTTCCTTCTTGTGAGCATTCACTGTTGCCACTAAGCAGTAACGGACCACACTCTGATCCACTAAGCACCAATGTGAAATTGCAGA--------------ACGTGCCTGAATACAGGGAACACATTGGTACCAGAATTAAAATGGTTTTTAAAACAGTAGTTTT--CGTCACTTTAGATACTTGAAAGATATATTTTACCtaattaatatttatttatatttt-aGTTCCTCCTGGAGTTAAATA----------TATATCTAATTTTATG-------------------TGGTTTCAG---------TTTCTACTGGCGTTAAATATATATTTAATTTGATATGAATATTCTAGTTGTAAGTTTGGCATAGA----GAAATGT---------TTTTCAATTATATCTGTATATATT--------TTTATTTAGTACTAAACATGTTCTTTTAAATAGTT------TATTATTCAAGTAAGGCTTTTCTTTTGTGaaaaataatatatatttattaCAGGAAAATCAGAAAATGAAA--TAAAGTATTTATTGAGTCATACTCTTAACAATCTGTGGAGCCCTTG--AGTCT-TCCCCCAACCCCACAAGATATTATTAACCTAGTTGTTCCCAGCTCCTCACATTTGTAC------TGTTTGTTCTCTGCCTGCCTTCTCA---------CACTTCCTGATGTTTAATT-ATTTCAAAGTGATATTTTTCTTCTGTGGAACTGTCCTTGCTTTCATAGTTAATGCTCAAGAATCTCAGAGCAGGGCATCACAGAATA---AATACTAACTTGCTAAGAACTGTTTCTCACTGGCGCTTCTTATTCGGTAAGAGGCATCTGTTTATTATTTAGATTGTAAAGAGGGCATGATCAAGACCATAATGAAATG--ACTTGCTGGGTCATAAAACCATGAAGACAGTCAAGCCACACATTTGAATAAAATCCTGCAGTAGCTAG------TGGAAGTTGTGATATATG-GTTTAGAAAATACACATTTTAAAATTCACAGAAGCTTCAAAGCCCTGGTCAGACATAAATTCCAATCCGTTTTTCTGTAACGGT-AAAACTCCAAAGGACTCTCGTTCGCAGGCTCTCAGTATGTGTCACAGGTACACGGTCTCTCTCTGCATGCAGAACGCAAAACGCGTTTATTTCTGCCTCGGCGTATATTTTAAAATAAATTACCCCAGGAAACAAAATGTTGAATACACTGTATTCAACTATGAGCCAACAAAGGAGGCAAAACCTCTTTTCCTTTCTAAGAGCCTATATCATATTTGGTGATAACAGTAGGGGGCTTGAGGTATTTGAAAACAACACTCGT-----------CAGACTTTCCTCTAG------------------AGTTAGTGGGCAGGGTTCCCTTCATCCTG-------TCCGTGTGCTGCTTCTTGCTTTTGCTCAGGAGTTTCAAATATAGGAAAGAGTTCTGTACTTACCATTCTGGGAAAGATGAAATTCATCATTGAACCATAAATGCCCTGGAAAGCAAAGAAAAGATTATTATTTATTATACTTTCATCTACAGAAGTCCTGACTGCCAAGTG-ACGATATCA-CAGCAGATCAAATG-------------------GAAACATGGCTCAGAGGGCCAAGGGTTCTTACACACAGAGGACTTGTGGACAGAACTGCCTCAGGACTGAGTGTTTTCCAATGATAGCTGCTTTCAGGTGCGTAATGCAGCATTTTATTTTTTCAAAATAAATGCTACTGAGTT--GAGAAAATAGTCAATATATATTCTCCACTCTGTCATTTCGTTCAGAAGA-------CTGAATATAGAGGTGACCATGATACTTAAA--ATTCAGGGAAAACCTGGGACGTGTTTCACTTTGCTACCATCAACACG-ATAACCATGCTTTT
s HiC_scaffold_1 135692148 1926 + 233722169 aaatgctttgtcTTCATGTTTTAACCTTTCTCTGTGTAGATCTTTCATTCTTGTGAAACAGTTAATACAGTGCCAGTTCTTATATACAAAGC-CCAAGGTGGAACTGGGGGCCTGTTTCCCACACATATGCTTCAATTCTATGAGCATTTTTGTACCAGAGTAAAACA---TTTTAGAGGTATAGCTCTATCTTCACTTTGAAtcctatttttgtttatttttcc-aattaattttcatttatatttttagttcctCCCTAAAGTAGGTGCAaggtactttatttttaattgtatgatATCATTGGGTCATGCAGTTGGTACAGAGAAGTATTTTTTTactataaatgtgtatatatgtatataacttttgttgtttttgtttttattttaaaacagaacaagaaaagtgacacagaatttcaaaacaaataataggagattgacaatggttaatatattgtgtattgttatcttcaaagtagttgctcaataTTGTTCaaataatggttttattctt------gctATACATATTTATCACGT---CATTAAGAAATGAATCTTAAAATACTTAT--ATTCTAACTCTT------TTGTGTACCTTTTGTGAATCTGTTTTCTAAACCCACAATGTAATAACAATTC--TTTCTCCCTTCAATACAGAAATATGCAACATATGTTTGTTTGT--CCTGCTTTTTCAGTAATATAACACTTTCTGATGACTGCTTTATTTCAAAGTGCTATTTTTCTACAGTGAAAAATACCTTCTTTTTATAGAGATTAATCAAGACCACTAGGGAAAATTCTTTCATAAGATACAGTAATAACTTGCTGAGAAATATTTTACTCTGACTTTTCCTATTCAATaagattaattttattgttatttggaTTGTAAAGAAGTTATGATCAAGACTAAACTTGAATATTACTTTTAATGTCATAAAAACATAAAGCTAACAAAACTATGTGTTT-AACAAAATCCTATGATATTTAACTCACTTAGAAGTTATAATGTATGCTTTTAGAAAATAAGCACTTTAAAATTCACAGATGTTGCAAAGCCCTGGTCAAATATAAGTTATAATCACGTTTTATGTAATGGTAAAAATTCCAAAGGACTCATAGTCACCCACTTTCAATATGTATCACAGAtatgctttctctttttgctcATAGAATGCAAATCACATTTATTTCTATatctgtgtatattttaaaataaattactgcagaaaacaaaatattgaatatacCACATTCAAGTGCAATCTAATAGAGAAACAGAACCTTGTGTTTGCGTCAAAGAGCCTGTAGCATATTTGTTGAGAACTTGAAAATGCTCAAGGAATTTGAATGCAGCATTTATTTCTCAAAGTGTAAGCTGCCTTATAATTATCAGATCATGCATGTATTTAGTAACTGATACTCCATTTTTGTTATACCaattcagggtttttttgtttgtttttgttcagcACTATCAAATATA-GAAAGAG-TCTTTACTTACCATACTGGGAAAGATGAAATTTATCATTGTGCCACAAATGCcctagaaagcaaagaaaatattattatttattatacctgCATCCACAGGGATCCCAACTGCCAAATATAATGCATcagcagcaaaacaaaaatgaagtaagTCTACTGAACAAAGCACAAATCAGTACTCTAAGAATTCTGAAACAT-----GTCTTTGGACAGAACAACTTTAGAATTAAGAAATT----ATTATAAGTACTTTTACACAgagaat--aaaatgttattttctgaaaacaaatactatagaattaagagaaaattatCAAT-TATTTTTTACAGTCC-CCTTTTAACCCAGTTGAATTTTTCATTAATACCAATGAGACAGCTAAACCTAAATTTTTTAAGCGAAAATTGGAAAACATTCTAGTTTCCTTAAGTCATCATTCATGACCATGACTTT

a score=118508
s chr3           149019381 6120 + 160039680 [encoded data, 6950 characters]
s HiC_scaffold_1 135694430 6416 + 233722169 [encoded data, 6950 characters]

a score=42927
s chr3           149026956 1974 + 160039680 gacccatctcatcagcTTCTCTGATTTGCTTTCTCATCAGATTCAGGCCATTGAGTTTTTGTGG----GAAATTGTTTCAGTGATTCATTGTTAAATATCTTATCAGGTGGCACATTACGTGTGATATTAATATTTATCCTGTGATTAAAATAATCACTGTAAAATGGCTCTTTCTCAT----TTTATAAGTATTTTCAGAGCAGAACATTATGT-TGtatttatttataatagcattaactcatggatgttcgtctcattcaatgagttataatcTGCTATGCCAGGACAGTCTAATACTCCTGAATGTGAAGCCACCCCAAGAAGCT--GGAATTGTGTCATGTCTCTGAAGGGAGGGAGGCATACAGATTAGGATTCTAGAGGTCAGCTCTTTCTTAGGAAACTTACTGACAGAGTGTAGAAGGTAGAAATACCAGGGGGTCCTTGACATTTGGGTCACAAGGAGGGGCATGCATGTTGTTTAG-ACAAACTTGTTTTCATTTAAGTCTTAGTGTACCTGGTTTATCTTAAGTTAAAGGTTCT-----TTTAG---AGTCACAT-----CCATTCTGGCATC--------------------------------------AGAGT--------------------CTGAAG-------------------------------GTAAAGATTCCCACAACAACCTAATAATGCCAGCATTTTCTTGCTGCTCACC-AGAAAACCTTGTGGAGCAAAACGAACTAGGGTTACCCTGGATAGTCA---CGGTGGCTGGACCTCATACTGTGAGCAGTCGCAT----CTGAATT--TGTCTATCTCTCACTGTTACTACTCACTTGGAACTTCAAATCATCTCAGATACGATCACAGGCATCCTTTCTAACATGACTTTTTTTCTTCAGTGTGTTCCTGGAATCTTGCgagaacatctgtgctttgacataacacgatattccaggctagcttttcattttacttttttcaggccacgttctcataattaacccattctccgtttagttccccctcccatttttttccattaggaatggtggttagaaacaacgtgtgtgaggagagtatccccagtgcctgagggcagtcttctcgggacccagaaataagggacacatg-gtgtaaaaatccatccatctatcgacatactcagatctgtatctatgtcttat-gtatttacaaaatattaagatctccatttctaaaccagtcttatagggacccacctggcctctaatttcattttctt-----tgctcctttctttgacactgg-gagtctgccttccattatGTTTACTGGAGTTCCTTCATTGGTCAGTCACCTTGAGTTGAGGCAGTATATCTAATTGCAACTGAACACTCCCAGCCCCAGTGCAG-TGCTTCCCTCATCCCATAAGAGGTCCAAGAGTCGGCTCAGGTTCTAGGTTCCATGCCACACCACCTACACGTGCCTCTTTCTCC----ATTCCCACCTTC----TGAGCCAGGAATGACTTGTTCAGGAAAGGAATAGATGGACAGAG--------GGGACAGGAAGGGGAACAGAAGA-----AGAAAAAGAGAATGAAGATCAAGACGTGAA--TTTAAAA-----TCACGTCTCCACAGTGTGAATCCTAAAGTTATAGTAAAT------TTTTATT------TTCTATTTTTATCCGAGGAACTAAAAGCAAAATAATCCTCCTTTAACTAAGTAGACTTCACATACTTGACTGATATTTATCGAGTGCTTACTCCGTGGTAGTATAATAAGTTTTAGTAAGAACCCAATTAACTGCAGCTATCAATTAATCAATATATTTTACTTACTGA----CTTTTCAGGGAAATTGGCCAATTATAAGAAACCACATTGCGACTGACGATTTATTCAAAATAAGGTCAATCCAGAAGCCAGCATGGATTTTGCTCTAATTTGTATGACATATATTATTCTATGCAATGATAGAAATTATAGAATTATGAAGCTCAGAAAGAATATCAAACTCAATCACAGCTGAAACATCA-GGGGCTGACTGCAGATATCTTAGAAACCTTTATGACAAACACAGTTTTATACAGTTAAGAATAAAAATGTTACCTCC
s HiC_scaffold_1 135702541 2019 + 233722169 GATACACCTTgttagatttt-tcttttgctttat-gttAGATTCGGG---TTGTCTATCTGTgataaagaaattatgaaaatgattaaTTTCCTAGCATCGTACTAGGTGGCACATGATTTGTGACATTAACATTGATTTAGTGATGAAGGTAATCACTGTTACGTTGc-ctttttcatgctttttataAGTATTTTGGGGGAACTCTCTTTTGTATGTATGTACGTAGGTTAGCATGGACTCATGGCTATCCATTTTATTTGCTGAGTTATAATCTACCATTGTGGAAGAG-CTGCTGTTACTGTATAAGAACCAACTGTAAGATGCTATGGAAt-----------------ggaggagagacagacaga----gagcaaAGAG---AGCCC----------AGTTTACTGA---------------GGGACTTCATGCAGGATCCCGCCATTGGGTTCAGAAGGATGGGCATGCATCTTGGTTGGGACAAAAGTGACTTCATCCAAACTAGAATATTCTTGTTTTATCATAAACTACAGGGggtgagaatttagctcagcagcataagtgcctgtctggcatatgcgaggttgtgagttcaatcccctgtaccaaaaaataaaagttaaaaaaaataaacttacagCTGAAGAGTTGAGCATGTTGGGTACTGACATCCCATTGTAAAGCTGCATATATCACTCTACTAGTTATCCCCCCTTATTACGGTATGCAGAAAAAACCATGCA-AGAGAAACTGGCTAGAATTACTCTGGGCAATCAGAACTCTAGTTAGTACTCATGATGACAGTAATTATATTCAGCTGAATCCATGTCTCTTTGTCATTATTGTTACTCACTTTGATATTTGAATTGTCTCAGCTATTATCAGCATGATCCtctttaa-atgactttttttggACAA---GTCCAAGGCATTGTTTGAGTACTTCTATACTTTTGTACAGTGAGACATTCCaagatcattttgtattttat---------gccTCATT---------------TTTTGCAATCAG--------CTAGTTTCTTTTTGTTGAGAATAGTATTTAGAAACCAACTGGGAGAGAGGTGTGGCCAT------TGAGAGTATCATTCTCAGAGTCCAGAAACAGAAATCATATATATGTGAAACTTCACCTATCTAT----ATCTTAAATTCTATGCTTACTTCTCCTAGTATTTATGAAACACTGATACCTCCATTTTCAAGGCAATACCAGAATAGTTCATAGAATCtctattttcatatttgtaaTGATGGCACTCTTTTAAACAGTGACTAATCCATCTCCCACTGTCTTTAATGCAGTT--------AGTTATTGCCCT---GTTTAATCA--ACATCTTATCTCTACTAAATATTCCCA-CCCCAATTCAGATGC---------CCTACTTGATGTCATTACTTGAGCTGGGACACTGCTGTTTATGCAgccctgtctctctcttcctgtaTCTCTTATGGATCCTGCCTTACCCATGGGTTAGGATGGAATTGttaagaaggagaaaggaagcaaagagTATAGGAGGAAAgataaaggggaaaggaagattttaaaaaaaaaagaatgaggag-aaTTTGTGACACTTTAGAAATAGCTTACTTGTCTGCTATATGGATTCTTACATTATTGCATATCatatatttaattgaaaatttttctttttattgcagaAACTAATAACAAAATAAGTCTACTTTAACTGACTAGACTTCATATATTTgaccaatatttattgagtgcctactcTGTGGCAGTATAATAAATTTTAGTGAAAACCCAATTAACTGCAGTTCTCAATTAATCAATATATTTTACTTACTTACTAGCTTCTCAGGGAAATTGGCCAATTTTAAGAAATCACATGCGGATtgaagatttatttaaaataggGTCAGTCATGAAGTCAGTATAGATTTTACTCTAATTTCTATGAC----ATTATACTATATAATG--TGAAATGATAGAATGATAAGTCTACAAAAGAATAAGACATTCAATCACAATAGTAACATTGCTGTGCTAACTACAGACAGTTTAAAATTCTTTCCAACAAATATAGTTTTATTCAGGTAATCATAAAATTATACTCTCC

a score=29499
s chr3           149036130 2985 + 160039680 aataaaaataatcaatattaaGATAGTTTAACTTGAACTTTTTAAGT-----TGTATTAACATATTAGTTAACTTTTTGTGTCCTTATAAAGAAGTCACC-TTTCCTAGTCTCTTGATGAATCTTTCCTTCTCCATGATGGAGGATTGCCAAG-AATAATGCTTACACTTCTCAGGACAGAAGGCTACAGCCTGCTGATTCCTTCTGAGATGACCCCCACTCTGAAATGGTAGGGTGGTTTACAGTGATTTCCATCTTTGCATTTTCCTATCCACTCTATCCTAAATTATAAAGACCCTGGAATTCCTTGACTTG-------AGAATTATTTTCT-TCTTTGGGACAAATTCCGTACAAGGACCACTGGGAATAACATGTAAAAGACCCGAGAA-CAATGACATCTCTCAGGGACTGTGCGAGCACATCGCTCAGATGTAATTGCATGTGGTTTTATTTGTGCTGGAACCAGAGATGGGTTAGGAAGT---TAC-TCAGGAGACAGAGCAAACTAAGAAGGGACATCAGCTTGTTCTAGT---CTGTTCTTGTCTCTTTCCACCAAGCTCTCAGGCTCTCTCCTAGTAAGCTGTGCCCCAGCTTCTGTGCTGAAATCTTCTCTTTGGTCCAAGCGTAGT--GTTGGGGACACTGGGGCATGTGCACTGAGAGCC-TGTTTGCTGCACTGCAATAGTGGAAGAGAGAAGAGATCCAGCTCTAGAGTAGAGTCGACCAACAGCCGTGGGGCACACAATGTCTTTCCACTGATAGTCCACTCTTGTACTATCATCCAcagggccagtgagatggctcagtggcaaacgtgcttgtgatgcgagcctgtggacctgagatccattccaggatggatagtgggaggagggtaccaactctgcaggattgccctctgacctccacatgtgtgctaaggcaTTTGTGTGCCTGCTTACATTTATCACATACAATAATACCATTTTAAAATTAAAAGTAGCATCCACGACTGTAGCATTTTACCAGTCATTTTCTACTAGACACAAAACGGCACACTGTCTGCA---GCTCAGCTCAGGGGTCATCGTCTGTTCATAACCAGAGTCCACCCAT--------------GCTTCAACA-------------GAGTAAGTCATCTCG---GTCTACTTATCACGTGCCAACTTATAAAACGAGCTTATCAGATCCT-CCCCTCACAGCCCAGAAGTACCTGACA-GGGAAAATAGAAGGAGTGTTGAAACT-TCTCCAAACACATCCAAGGTTCCAGTGGACACTCATTCCTCAGAGGCATATGACCATCTCTTAAATCAACACAGAGATGCACAAGTGACCTCATCATGTACGCATCAAGTACATAAACACCTGTCAGTAACCTAGGTTCATATCCTTGAAGGCTGA------------------------------------------------------------------------------------GTCACTG--------------------------------------------------------------------------------------------------CACTCCTAGCCTGTATCTGATTCCTACTTAATTTCCCAGAAATATACTTCACTTCCCACGGGCTGGCATTTATATCCCAT-TTAGTTTTCCCACACTGAATACAATTCGTCACCAGTCAAGCAGGACTTTGCCTTTTCCTTTCCTTTAGTGTGGTCATGTGTCATATTGTTCTTCATTGTCACTGGGTGATATCTGCTCTGTTACCAAACTAGAACTTACAGGCCAATAGAGGCGATC---ATTGAGCA-CTTTCAAAGTACAGATAAAGCTTAAAGCTTAAAGCGGTAGAATTAGGAACGTATACAAAACCAAATTCAgggtctaggaatatagctcaagggtagaacatttgtgtggtatacataaggccctaagtttagtccccagtacctcaaaaTAAGGAGAGCCAAGAAAGATGGAACCAAATATTGAGCAGATGAAACTGAATGAAAGGatatatatgtttacatatatatacatatatacaaacacacatatatgtgtgcatatgtataccatatatattatatatcatatgtatcatatgtattgtatattatatatcatatattatatatgatatatGCtaggtggatggatagatagatagatagatagatagatagatagatagatGACATAAGAGAATACTCACTAATTTCTCTGTGTATGGCCACAACAGGAATTTGTATGTGGGCCTCGTGCATAGAACTAGTGATACTTTGTGCTAGGAGAAA-AGGTGAAGTGTGCATTGTAAGTCACAGCAGGTTAACAGAAGAC----AGCTCTAGTTTGTCCCTTTTCTT------------------------TCCAATATAGTTACATTTGCCAGGGCTTCCCTTCTTTATTTCT-TAGTAATAGTTC---CTACAGTACATCCTGTAAATTAGTCATTTGTATTTCC-------CTTCTCTTTAAACAAGCTGAGCAGGAGACGAGAGACAGGAGGAGGAGggtgatggtgggtggtggtggtggtggtggtggaggtggaggaggaggagggggaggaggaggaagaggaggaggaggaggaggaggaggaggaAAAGCCAACTGTAATTTTAAGTAACTCCTTTGGATGGTCGGGTCAGGTGCTCTGTGA---------------------CTGTCACAGC---------------ACGGAGCCTTCATGTCTGC--TCTTGCACAGGCCAATTTATCAGCTGCAGCCACTGCTGCTGGCTG-CCCTTTCTCTCTCAAGACACCAGCCCTAGACATACAGGCCCCTCCATTCCTTTCCCTTCATTCTTTACTTCTTTAACCTAATTTAATCCCAAGTCTCCTCCAAGGACCCTCAATTTCAAACCTGTTCATTAGGCTGCTTGAGAGTACTTCAATCTCTGCATTTCCTTTTACTCCTTACAAGGCTAGCTTGCTTTCCAAACTCATTTC-TTCCATTTTGTCTCTCAACTTCCTTACCACTGACATCACTGTTTGGCAGAGTCGATG----TCTTTTATTTT----AGCTCTTTGAGGCCTTTTCCTGCTTG---------------ATTTGGAAG-AGAGCCTCGAGCCTCAGCAGAAGAGGTTGAGTGTTAGTCGAGATCTGGCCAGAGCATTCCAATGACAACTCCACATTCTATATTTGATAAGTGAGCAACAACTCAGAATGTTGAACTCCTGGG-AAAGTAACGATCCAGTGACTTAGAAA
s HiC_scaffold_1 135707107 2612 + 233722169 AATGAAAATGATAATTCctaaaa------aac----actttttaaatgtcACTGTGTAATAAAGATGTTTAACTCTTCTTGTCATTATTCTCAAGTCTTCACTTCCTAGCCCTACGTCGTAATTTTAGTCTCCTATGGTCAAAGATGATCAGGGAACAATGCTACTAGTTATCGAGACGGG-GGCTTCTGTGT-TTGCCATCGTCTGAAGTAATTCCTTTTCTGAACTGAAAAG----------------CCCATCCTTGGCTTTTTCTGTCACCTCAGTCCTAAATGAGGAAGACGCTAGAGCAATCTGATTTGTTCTCAAATTATTACTTGCTATCTTTGGAACAAATCAGGTGCAAGGGCTACTGGGGATAACATTGAAAATACACAAGAGTCATTGTCATCTGTCAAGTCCTGCACAAACGTATCCTTCAGACacaatttc-tgtaattttatttgaGCTGGAACCAgagacattttagaaaatatatacagtagAAGAAAGAGGCACCTAACGGGGCCCGTCTGGCtgtgctgtttttctcttctgttctacTTTCACCAgcctctcagtctctctctt--------------------------------------------------gtAATAAGTTAGGCACTTTGAGACACATTAACTTGGAGTGGCATTTGGTTCACTGCAATAAGGGCAGAGAGACAATGTTCAGACTTGGTGCAGA--CAA--AACAG--------------GAATCTTTCT-----TAGCTC------------------------------------CTCAGCATGTACTGCCTTTCTAAT-------TAAGGACTTAA-----ATACCAGGGT----------------------------------------------------------------------------TGGTTTCTTT------ATAAAATGTCACC----------------------CCACAACAGTAACGTTTTGTCTTTATGCTTCGCCTAGACACAGAA-GGTAAAGTGATTGCCAGTGTCTGACACAGGTGTCAGCGTGTGTTCAAAATCAGCCTCTACCTGTTTGAAACTGCTGCCACCTAAATACCTATGTGTCTTTGAGCGAGTTATTGCGTATGCCTGTTCATTGCTCTCCCTTTTGTAAAATGAGGACATTAGTTCCTACTTCACACAGTTTAGAGGTACTTGAAGTGGGATAATGTAAGTGGTGTTTAGAATATTGCCAAACATGCTCTGTATTTTAGTGGATATTGATTTCCCATGAAATTGTAAACCTATCTTAATTTAACGTTTAGAAACAAAAGTGACTCCAT---GTGTTCATAGAATCCTTAAACATCTATCAAGAGCTTGggttaatttctttgaaaaatgattCATCAcactctctctttttccttttatccattggtttttttgtgagacaaggtttcactatgtattcCCTGCTGGGTTTGAagtcactgtgcagcccaggctggccttgaactcaaggtgattctcgtgtctcagcttctggagtgctgggattacgggcgtgtgccactgtgcctggctctcaTCACACTCCTTGCATGTATCTTGTTCCTATTTTATTTCCTACATGGATCTTTAACTTCCCAC-------CACTTATACCCCACCTTCATTTTACCTCCGTAGACACACTTCTTAACCAGCTACCTCTCTCCTTGTCCTTTGTTTTCCTTCCCTATTGTAACGTATTTTGTCATTTCTC-----TATTTATTGATAACTTCTGTATTA--AGATTAAAACC-AGATGCTAAAACAGAGGAGCTGTACTGTGCAGTTTTCAAAGCTTAGATAAATTTTA---CT-------------------------------CCAAACACAAGGTTGGTGaat------------cagaatat---------------------------------------atttaaaaat-------------------------------------------------------------------tacacacacacacacacacacacacacacacacacacacgcagacgTGTGC---------------------GCCTCATAT-------------------------------------------------------------------------------------------------------------------------------------TGGAAAATTGCACATGGACTTCCACTATAGTCCTAGGGGAACTCTGTCCTAGAAGAAAGAGGGGAAATGTGAGCGTTAAGTGTTGGTGGGTTAATAGAGGACCATTAGCTCTCAGC-GCTCCTTTTCTTAAAGAACCTTTTAATTACTGCATTTCTAATGCACTCACATTTACCAgtacttctcttttttgtttgtctaaTAATAGTTCTTCCTAAGGTGCATCCTAAAAATtacccttttccttttccttgccctcttctttttaaacaatt---------------------------------------------------------------------------------gtgagaaagagagagag-------------------------aaaagcagactgtaattttaaataactgCTTGGA----TCAGTTCATgtggtcttaaaaaaaaaaaatttaaaaaccacctGCAACAGCCATTAGCACTGTGCAACTGTACCTTCCTGTCCCCATTCTTAAGCGTGCC-------------------TTGCTGCTGGCCGGCCTTTTCTCTAGGAAAGCTCCCGCCCTTGACAAATAAGTCCTCTCCATTCATTCCCTACATTCTTTACTTCTTTAACTTGTTCTAATTCCAGGTTTCCTGTAAGGACCCTTCATTTCCAAATCCTTCATTAGGCTGGCTGATAGTACTtcaatctttctgtttccttttactCCGTAAAAGGATAGCTT--TCTCCCAAatcattttgttcagttttgtctCTTAACTTCCTTGCCTCTTACATCACTCTTTTGCAAAGGCagtgcattttttttgttttcccaagtTCTCT-AAGCTTCGTCCCTCTTGTCCCTCTGTCCCTTTTTCTGGAAGTCTCACCTCCAGATGGAGTAGAA----CTAAGCATTAGTAGTGAACTTGCCAGATAATT-AAATAATGACTCTGCATTTAGTA----------GCACAGCAACTGAAAATTTAGAAATGCTGGGAAAAGCAACGATTCAATGATAGGGAAA

a score=97233
s chr3           149040252 4937 + 160039680 [encoded data, 5417 characters]
s HiC_scaffold_1 135710177 4836 + 233722169 [encoded data, 5417 characters]

a score=40964
s chr3           149048332 2301 + 160039680 GGAAAATACTTTCTCTTGAATGCATGGAACAAAGAAACACTTAAACAAGAAAACATGATATAGTACATGTGCCAGTGTTCTAAGAGTGTGTTAAACATAACACATGGGCTCATTTCTGTCAATAATAACCTCGAGCCCTTCCAGGAGGGAGGCTGGCTCAGATAATGACTTCCTAAAGTCAAATTATTGTACTTGCCCATACAGGCCTTCTTAGTCATTGTTCACGGCAAAACCACCTGTGAGCGCACTCTTGAGGAAGCCGTAATAAGTAGACTGTTCGGCTGCATCTTGGGGAAATAACACTTATAATTTTGCCCTACCTGAACAGTGGAAGGGTAATTGTGATAGCTTAGCTGGGGTTTCCTCTAAAAATCACAGGTTCTGACTTTACACCTTAGGGGAAATAGAGAAACAAGCCAATCAAT-----CCGCTATAAGGACAAAGAACAACATAAGCCTCC---------------AGTCCTCTGGGTAGGAGGGGCTTGCATCAAGACTACAGTCTTTTAGGCCGGTGGACCTTGCTTAACTTGAAGCAGAAATGACTGTATGTTAACTAAACGAATGACACTATACACA---TTTTGAACTCGAGTGCGTGCTGTTATAATTTGGAAATCAGAAATGTGTGCACAAATCTTTTCACTGTCAAGTACAGTCAAAAGCCCAGCCTCTGTAGACATGGGAGCAGTTTTCTGAAAGATAAGAAAGTGGTTGTTTAAAATGGTGTAAAATCCATAA--------------------------GGAGGCCCCACTCCACGCTACCA-------TGGAATTCTTCAACAACATTGT-CTGCATTCTGTGGATCTTCCACCTAGAAATGTTTGAGGACCACAGAGACGGGCAATTGCTCCAGCCTGTGCCGACCGACAGTAATGGCTTCCTAGGATCTCAGGATTAAAGAGCATGTGGGCAGATGTGACACCCATAGGTAGCTCTGTGCTAGATGCTCACTGAAGTGA-------------AAGGTGAGCCCCATCGTCCATTTCGGAAGGTTTTCTCTTCATGTGTCCTTCCACAGCTTGGAGGTAAATCC-------------------------ACACAACAGACGCCCAGCGTGGCCTTTT--------------------------------------------------------GAATGCTGGGTTTTGTTTGTTTGTTTGTTTAAGGACACAAC--------------ATTTCTGTATCCTTAAAAAACAAATCCTAAATAAGACTAGGAAG-GTTAACT-CCAGAAATTAAATGAGGAAGAGAAAATGGCTTAGCTTACCCTATAACAGAGTTTTACTACAATAAAATCAAACAGAGAAAATACAGAAATAATAATCATGAAATACAAAGGAAAACAGAGGGGAACCTGG------ACACATCATCAGATCACTAGTTAAGATTAATAATTTTGCTACTGTAGttccttttgtttgcgttagagggtgtctcatgcagcagaggctggccacaggttcaccatggagctgaggatggcctggcacttgccatctctcagattcccagttaaggccccacactgccgtatccggtgtatgcagtgttaggaatgcacgctctggcttcaagcgagctagctgagccttctaccacccaagagtgtccctagctccAGATTCATCATTTTGCCTCCTATAGAAGGTGCAGATAATAATGGAGTCTCTTTaaaaaaaaaaaaaaaaaaaaaaCCTGAAAATGCTACTAAAATTTCTACATATAGATGTCTGGTAAAATATAACCGCAAAAAGTGGTCTTATATTT---AAAACAAAAACATGAAAGATTTTTGTTTTGTTTTTTAAATTGCTCCCGTGGAATCAAAAAATGTCTGGCATAGGCAA-------------TAAATAAATAAATAAGCACAGAAAATCTTAGCATTAGAAT------------------TAAACCCTTGATTATACCATAAATAATTTCAGGAACTAGAAATGACTGGAAGATTATTTAAATTATATATTCCTCTGATCTCTGAATCCCTGGCACACAGTAGGAAGTCCTTTCTGTCTCCAGTCCACCAGTGTCTCACAAATGCAGGCTTTGTGACAT-GGCCTTTTGAGGAGGTTGCTATTCTTGCACGTCTTTG---AAGCGAGCCCCATGTCAGTGATGGGCTTTTG--GCTGCATTTTAACAATCACAATCCTTCCTTGCCATCAGGGCATTTTGGACTTGAGGCAGAGGAGAGAAAGCCGTGCTTAAGAAAACGTGGACCTGACTCACTGTCTCTAGAGAACTTGAAACAGGAGCACAGGT------TATGAAGGGTTATAAAGTC----CAGAGT------------------TGGACTAAAGCAGAGACAG--TAGGAAAAGCCATAGGCACCCAGAAGGAGACGGAGC-AGGGGCAAGGACCAGAGAAGGACTGAGATACGTGAGATCCGGAAGATAGAGAGCAGCCGTTC-TGGAGAG
s HiC_scaffold_1 135719183 2297 + 233722169 ggaaaat--ttttaatgaaactcATATAACATAGAAACATTTAAACAGGAAAATCCAACA--GT-CAGGTACTAATGTTCTGAGAATGTATTAAGTGTAATACATTGGTTCATTTCTATAAATAATATCCCTGGGCCTTAGGAGGAGGGAAGCCCACTTAGATAATAGCTTCCTAAAGTTAAATTATTGTGCTTGCCTACACAAGCCTACTTAATAAGTGTTCAAAACATAACCACCTGTGAGTGAGATGTTGAGGAAGTAGTAATAAATAAACTACTTTACTGCACCTCAGGGAAAT-ACACTCATAATTTTACCT--ACTGAATCATGGGAGGGTAATCATGATACCTTAGACATGGTTCACTGT-AAAATCACAGGTTTTGCCTTT-CACATTAGGTGAAGTACAGAATGAAATCGATCAATAAAGCtaagtaaaggaaaaaacaacaaaacagaactttTTCCTCAATTATTTGAATCGTTAAGGTAAGAGGGATTT-TATAAAGAGTGCA-TTTTCTACATCAGTGTTTCTCATCTTGTTTGAGGCACTAAGCACTGTATGTTGACTAAATAACACGTTTTGTACTTACTTCTTTCAATTAGTGTAGGTGTCATTAGAGTTAGCATATTA-AAGTTCATCTACAAATCTTTCTAACCTCAGGGATAGCAAAAAGTGCCTGCTCTGCAGAAAGGAGAGCAAATTCTCGGAAA--AAGAAAGTG---AGTTAAAGCAGCACAAAACATGTCAAATGGTATTTGTTACAGTGCGCTCTGGGGTGGGTCATTGTATGTTCTTACTGAAAGTAGAATTGTTCAACAGTGTTTTGCAGTAGAATATGATTCTTCTAACTGGGAAAGGATAGAGCTCACCAAGCTGGACAATTGCTTTAATCTGTG----CTGAAAGTTCCGACTTCATAGGATCATAGAATGAAAGGGCATCTTGGGAGATTTGACATCTC----TGTCTTTGAGAGTGATGTTCATTGGGGTGACCAGAACCATGGTGAGATGGTTGCCATCAGTCATTAAGGGAGACTATCATTTCACTCATATTGCTACCATTTGCAGATGTATTTGAACGGAGGAAGCAATGAGACTCAAACACAACCAATG-CTAATGTGGTCATGTAGCATGTATTGCAAGAACCAGGGTATATGGTCTGGGTGAAGAGGTACAACAATGGAGATGGCTTGATTTGAATTGTTTA-GCGTTCACACATGTAACTTAAAtgtaagttactttctttgtCCTTAAAA---TAAGTCTACATAGGACAAGGAAGTTTTAACTGATGGAAATTAAATG----AGAGACAATGATTTAGCTCCTCCCATATCAGATTTAAGTTCCAACAAAATCAaa-ggggaaaat------ataaaaattatgaaatgcaaagaaaacaaaaagggaggGGGGGAATTCACACATCATCAAAGGACTAGTTCAGATTAA------------------TCATTTTGTTTAGGACAGAGAGCAT----------------------------------------------------------------------------AGTTAA-------------------TAGTGGAT-TATTGCCAAGAAT----------ACTTGAAATGAG--------GCATT-------GCAGGAGG-----TAATtctgtttatttaattttggcc--------AAGT-CAgataattttg--------------------agaaaattgGTACTGCAAGAAAGTACTAAAATGT-TAGATACAACAGCCAGGGTAATGATAACTGCAAATAA-GAACCTGTActtagaagaacaaaaaaagaaaaaa------atttgtttctaaaatgGTTGCTGTGGAATC-AATGATCTTTGACATAGATGAATGATAAAACAGTTAAGTAGAAAAATAAGTACAGAAAAATTTAGAATCAAAATAAGAACTagatttttatagaaatttttgat--taccataaatattttt--taaatgacaatggTGGGAAGG----TTAAACTAGTTACTCATTACATCAGCCGGTTACTTCTATATAGTATGAACCACGTTCTACCTACATT-------TGTAT-ACTAGTAGGCGCATCATGACACAGGCCTTTTGAGATGTTTACCAATCCTACCACTTCTTGTGAAAATTAGTCCTATCATAATGGTAGGTAATTGCTCCCACATTTGAACTAT-ATTATCCTTTCTTGGCATCATGGTAGTTTGGAATAGGCACGGAGGAGAGATA--CCTGCCCCAGAATAAAGGCATCTAATTTTCTTTCCCTAGAGAATTTGGAATTGGAGCACAGATAGACAAAACAAAGAGTTATAAAGCCAGGGCAGGGTCCTGTTTGGGTACAGGCATGTactgaagcagagaaagaagagggaaagcaAAAGACACCCAGAAAGAGGCCGAGCAAGAGGCAAGAGCAAGATTGGGAAGGA-----ATGAGAGCAAGCAGAAAGA-AGCAGATGCTCATGGAGAG

a score=118822
s chr3           149054557 3194 + 160039680 AGACTAGTACAATTTATGATGTTACCTAAAGAAATTTAAACATAGCTAAAATTGCAGAATATCACATTTAA--------TCCCCCTCCCCGCTTTTCCACTT----GTATCTACTATGAACTATTTTGATGGTCAGGGAAAC--ACTTAAATGATTTAGCGTGAATGGCTGGACCAAATATAAAGAGCCAGCTTGCTGGGATTAAATAAATCCTGCTTTCATTTTGGTGAAGGCCGGTCCAACAAC----ATTTTCC---------------------------------AAGCATTTGTCAAGCAGC-------------------------------------------------------------------------------------------------------------------------------AAGGAGAACCACAG---------------------GCCCTAA-----GCTGAATTCTCCACTTTCACTCGGATGGTCTCAGAGGCAATGCTGTCTGCATAGGCCGTCAGGATATTTCCGTAACAAAGCACAGTTGACAAAAAGGGAAATGCCAAGAAAATAGATTTGTTTCTGCAGATGGCAGGAGAAGGGATGGGGTACCTGGACACGTTTCATGACACAGTTCACA----TCATCCCATTCTC-TCTGCTGTTCAGCCTTTCATAGGCCA--GAAGGTAGAAGATTGCCTGTCTGCAGG-AGACTCCCTCAGGAATCAGTGCGAGATGTTCAAACGCACTCGGAGTCAGCGTGCTGACAATGATCAGGAAAAAAAAAGATGAACCCCACAAGCATCTGGGCTGTGTACAAAGAGCCATCACGTCTCAGACTC-GGGAGTGATATATGACCCACCTGGAAAAGCGCATTTAGCTTGGATAAGCTCGATTCCAGAAGGACAGGGACCGTTGGAGAGAGTTAAGAGAAAACTGTTTTGAATGATGAGGTGACCGGGGAGGTGAGGTTGGGAA-AGGGCTTGGGAGGAAAGATTAAAGCAACTGACGGAGGAACTTTTAAGATTTGACATGATAAGAGCCAACAAATATTTGAGCGTAGCAAATACCAAAGAGACA----TTATTTGGAGTGCTACAAACCATAGAAAGAAAGCAACCCTGCAAATACTAACAAACTGCCAATGTAAGGGGAGG--AGAGGGAAATTTT------TAAAAAAATCTGGTAACTCTGGAATATTCTCTTGAGAAT-TTAAGGCGCTTTAATTCACATTCTATTTGTTACAAAATACAAAGAAAGCCCTGGGTGTTGGGGAAAAGATGATTATAAGGGATGGGTGGTGGATTATGTTGCTAGAGATGTTCTCTTCTGCTTTGTATTTCTATAAATCTATTA-AATATGAAACACTAATTTATGTTGAACCTTGCAGTACAGTGAGGTTTAAAGCAAACTTTGAAAGAAACCATTATTTCACAGTTTGCCCTTGGATCCCTGACTGTCAC-AGGGGAGAAGGCAGTTTTTAATCTGCAGTTTTCCAAAAACAATTCaattaaaaataataataaaa--aaaatCCTGCCCATAAGGGTTAATAGCTACAGAGGTGTCCAACTGATATTCAATCGCAGAACCTCAAATGCTCTTTTCATTAAGCCTCTGGTGTCAGGTTTTTTTTTTTCCCCTAGCTAAACCAAGATAATTGTTTTGGGGCTAATTTCTGAGGCTATTTAATAACACCTCCTGCTAGACTTTCCATGTAAACTCAGCAAGAAGATGCATCCAGAGTAATAGAAAAATATGTGTGCTCATTTTATAGCTCAAATTCACACTTTCCTTTACAAAAGAGAGTTTGCTGTTGGAAAGTGGCAGCTGCCACCCTGACTACACTAGGGAAGATTGGATTAGGAGGCCAACTGACGAG-------------------------GCAGGATCTGTATGTAAATTCCAT--CAGTTCATATTTCTGTAGATAATGAAATGGATACAAAACACTTGACTTTTTTTTTTCAGTCAGCAAAATAATGAACAGGGCA-CCCAAAAGACGCTGTAATGCACATT-GGCACTGGGTCACTCATATAAACGGACTTTGTGGCTTCTTTTCTTCTTTCTTTTATTTAGGTTTTTCTTTTCTTTTTAAATACTGTGTT-TGATGGCTTATGGCTCCACAGGTCATGACTACAGTGTAAGCACGGACTGCAAGCGTGGTCATCACACAGATGGCAAGCATGGTCATCACACTTTGAGCTTTGCTAAGGGGCAAACCTTGCGTTAGGTTTCCTTAAGAAAAACATTACTCACAgggcagtggcggcacacccctttaatcctagcactggggaggtggaggcaggcggatttctgggccagcctggtctacagagtgagttccagaacagccagggctacacagagaaacccggtctcgagaaaaacaaaaCAAAACAAGGAAAACATTACCCATCCTTTGGAAGAACTGCTATTCTTTCATCTTGAAGGAAAAGCAACGTACAT--CCTACAACCTCTTGGCAGGGCCAGGAGGGTACGTATGTATGCTTTCGTAATCAACTAACCACAACATTAAAATTATGTAGATTGACCTGTGATTATTCTTTTGTGTAATTTGTGATGACATGTAAGGGTAAAAGTATGTTTTTGAAAAGCTGGCCTCTAGAGAACATATGTTTTCAGGTTTGCAAATCCCCCTTTCTCGGCAATAGTCAATGACTATAACAGAAACAGTCAGGGAAAATGTTCTGTGGGGCAGCATAGAAAATGCGTCCTTCTCGTTCGGCTACTGTCATCTCAGCTCCATATATTGTCCTGTG----------AAATTCCCATTTGTGTCGATGGAGAATCCAGGCACTGGGAAGAGGAAACCCAAGACTCTCACAACAGTGACAGAAATCTCCAAGCGAAGCAGGAATGTGAACCTAGTGTGCGTTTTAAACCTGAGGCATTGTGGCGATCCATTATCCTGCGAGCGCAGCTGAACCTCT--GGGCTGCGTGCTCGTGTGTTCCCGGGGATGACTAACACACGTGGGATATTCCCTTTGGTATGTTTAATAATTTTAGTCAAAATAGGAAGCATACCTACAGTTCACCTCAT-GCCAAATCAAACAAGATTAGTCATATGACCCATGTCTCGCTGATAGATGAATTCTGACGGGGAAATGTCAAAGCATGAAGCATGGCTTTTGATTTGCAGTTAGTCTGCAGGGAACCATGGCGAGGCTCTCTCCAAAGGAGAATAACCCTGGCTAGGGGTTCCCTGGAAACTTCTACAAGAATTCATACATAACCGGTCCCCAGCTGTCAT----TTAAAAGGTCTCTTCTCTTGGAGTATCCAAACACACTC-AAGTGTCCTCAGACTGGCTATTTCAGCCTTCCCTTTGGGAAGTCGTGATAACTCACAGTAACAACCGGAAATGGAAGTAGA
s HiC_scaffold_1 135725185 3185 + 233722169 agagtaGTACTTTTTGTAATGACATCAAATGAAATTTGCCCATcactaaaatttagaaatatcacacttagattttattttctcctagtTTCTCATCCATTATTTAGTGTCTACTATGAACTACACTGAGGGTCAGAAGAAGTGGTTTAAACAATTCAA-GTAAAGAtgtgaagaaaatacaaagactaaGCTTGTTAACATTAAATAAAGAACGCTTTAATTTCAGTAAAGAGCTTTTCagctacttttattttccttacttttttttttttttttttttttttgagacaggattttgctatgtagctcagactagcCTTGATTTCACTGTGTAaccctggctgaccttgaacttgcagcaatcaccctaactcagcctccagagtgctggggttataggcatgtaccaccatacttaTCATCAGCTACCTTTAAAAGACATCTACAATACAGCTAGGAAATCATTTGTGTCCTAATTTAAGCCAAGTGCTCCTCCTTCACTCTAATAGTTTCAACAGCAAT-----TTGCATAggctttcattatattttcacaaTATAATGTGGTCCA-AAAAATGAGAATGTCAAGGAAAGAAATGTGTTTCCAAACACGGCTGGAGGCAGGCTGGG-TGCCTGCGCATATTGTCTAACACGGTTCATAAAACTCTCTTTATTCTCATCTAACATTC---CTCGCATGTGCTGTGGCAGGTAGGATGCAGCCCCTA-GCAGACAGCTTCCCTCAGGAATCAGTGGGAGATGCCCCGAAACGCTTGGAGCCAACATGCTGACAACGATCagggaaaaaa--gacaaactcCACTAGCACTGGGGCCATATACAAAGAACCATCACATTCCAGACTTAGGGAGTGATATATGATGCACCTGGAAAAGTGCGTTCAGTTTGTATAAACTCAATTCCAGAAATATGTGGAAGATTGGAGAGAGttaagagagaatt-ttaaaagtgatgAAGTGACTGGGGAGGTAAGGTTGGGGACAGGGCTTGGAAGGGAAGATTAAAGCAACCAACTAAGTAACTTTTAAGATTTGATATGATAAGAGCcagcagctatttaaaaatagtacataTGATAGAGACAGAAATTATTTGGAATAGTAAAAG--ATTACAGGAAAAGAAGCTTGAGAAGGTGAACTTTCTGGTTTTGTAAGGGGAGAGAAGATGAAAAACTGAATAAGCAAAAATACCT------TTTGGAATATTCTT----GAATATTAGAAAGTTTTAAATAATCATAAATTTACTGTTAAGCATAAAGACAGCCATGGGATT--GGAAGAAAACGAAGTTAAGGAATGGGTGGTGGGAAATCCTG---GAGACATTCTTCCCCGCTTACTATTTCCATAAATCTATTGTAATATGAAATCCTAATTTATGTTGAACCTTGCCATAGAGTGAGGTTTAAACTAAACTTT-AAGGAACCCATTATTACACAGTTTGCCCTGGGATCTCCAACTATTACCGGGGGAGAGAACTGTTTTTAATCTGCAGTTTTCCAAAaacaattcaattaaaaataataaaaaatctgaaatcctGCCCATAAGGGTTAATAACTACAGAGATGTCCAACAGATATTCAATCACAAAAT-TCAAATGCTCTTTTCATTAAGCCtctggtgtc-----ttttttttttccatagctAAAGCAAGATAATTGTTTGGGGGCTAATTTCTGAGGCTATTTAATACCACCTCCTGCTAGACTT----------CTCAGCGAGAGGAAGCATCcaaagtaatagaaaaatacTCTTGCTCATTTTACAGCTCAAATTCATACTTTTCTTTGCAAAATAGTGCCTGCTGTTTGAGTGTGGCCACTGCCATGCCAACTATATTGGGGAAGATTGGATTAGGAGGTAAA--GCTGAGTGTGCAGTAAAGTCCTTACTCTCTAGCAGGATCTTTATGTAAATTCCATTACAGTCTATACTTTTGCAGATAATGAAATGGATACAAAACACTTCAAGGTTTCTAT---GTCAGCAAAATAATGAACAAGGCAGCCCATAAAATGCTTTAATACATTTTTGACATTTGGTCATTCATATAAATGGGCTTTGTA------TTTCTTCTA-CGttcacatagatttttttttt----ttaaatgctacatTCTAACAGCTCATAGCTCTGCAGGTTATTACCAAGGTGTGAACATGAACTACAAAGGT--------------------------TCATCACACTTTAAATTTCAGTAAGTGGCGAATTTTGCATTATGTTTCCTTAAGAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CATGGATAATCTTTTCCTC--------AAAACTACCATTCTTTCCGATTGAA--AAAAGCAGCACACATACCTTGAGGACTAATGGCAGTGCCAGAGGGGTA--------TGCTTTTGTAATCAACtaaccacaaaattaaaattatgtagaTTGATCTATAATTATTCTTTTATGTAATTTGTGATGACATGTAAGGgtaaaagtatgtttttaaaagactggCCTCTAGGGACAATATGTTTTCAGATTTCCAAATGGATCTTTCTCAGCAATCGTCAATGACTATAACAGAAGCAGTCAAGGAAAATATGCCACAGTGCaatgtttaaaatgtattcttttcctTCTGCTATTGTCATTTCAGTTCCATATATTGTCTCGTGCCTGAAGGTGAAATTACCATTAATGTCAATGGAGAAGCCAGGCACCAAGCAAAGGAAACCCAAGACTTTGgcaacagtgacacaattctccAAGCGAAGCAAGAATGTGAATAAAGTATGAATTTCAAATAGAAAGTATTCTGGTGATCCATTATCCCATTAGTGTAGTGGAACTTTTCAGGGATGTATGCTCATCTTTATTCTGAAATGGCTAACACACATGTAATATTCCCCTTGGTATGTTTAATAATTTTagtcaaaataa-------------atttcacttCATTGCCAAATCAAACAACATTAGTCATACGAACTGTGTCTCCCTGATAGATGAATTCTGATGGTGAAATGTCAAAGCATAATGCATGACTTTTGACTTGTAGCTGGCCTTTTGGGAGCTGTGTTGTGACCCTCTCTGAGGTGG---AGCCCAGTCTGAGG--TTCCTGTGAGCATGCTCAGAGAGTCATAA--AATAGGCTTATAACTTTAATGCTCTGGAATGCCCCATTCTCCTGGAGTTCTCCACTACGCTCAAAGTGTTCTA-----GACATTTCCAGCTTTTGATTTGGGAAGACCTGGTGACTTG-AGAGATACCAAGAAGAGAAACTAGA

a score=21534
s chr3           149062187 1981 + 160039680 TAATATAGCCATTTGTTCCAGGTTATCTGACACAAT-CTAGTTTACGTCTCTTGCTCTGGCATTACTAGTAGTAGTAGTATCTGTTTTCACTGTTAAAGGTATCTAAGTTTAACCAAGAAGTTATATACTTACATCGACCTACCTACCCTTAAGG-AGCTCTGAGAGGCGGGGATCTAAAG--TGACAAACCCTGTAGAATTTCTCCATATTCCATCATTCAACTTACTGTGAAGCTATAGGCAATTACCTGTCTACTCCGAGACCAATTTTGCCATCAGGAGCATATGGTTAATAATAGCTCGTGGAGCTGTTGGGATAAC-----------AGTGTTATATCTGGGTAGGCACACAAATGGGGCTCCCATGATTACCCTGGAAGATTGATGGGCA-TTTACTCAAGGTGATGGATTTTTGCTTAGTGATCAGCATTTTGGGAGGTACTAAGAAAGCCCCCATTAGTCACATCCATCTCTATCACCACCACCCTACTATGCACCAAAGGAGACTGGTCATAAACATTAGAGATGATCCATTTTCCCCCTCTTG-GTTCACACTTACACTGCTAGGGGATTTGTATCTGTGGGAGATAGTTAGGTGTTTGC-CTGTAACCATAGCA---GGAATTACGGTCATTTTCTTGTCACTTCAGAAGACTTTGTCTTACTGAGAGGACAGCATTTGGCTCTGTATATGTG-----------AGCTTACTTGCTGTAAGAATGAACGACTTAGAA--CATCGTAAAAGTCTTCTAAGTGTATAGT-------ATACATTTCTACAGTTGGGCCCTCTGGGAAGAACCCAGACCCTTCTGTCATGTGAGGAAGTTTCCTTGAA-----GTCCCCATCTTCAAGTGATTTCC--TCCATCTAATTGCCCATCTGTTTCTACTTTGATTTTTAAAAATA---TTTAAGAATTTACTA-GTATGTGTCTTACTGTTTCAGCTAGTGATCTCCCAAGATGTGTCTCACCTGGTGGCATATGTCTGCCTGATGCACTGCTCACACCCTAGTGTGAGAAAGACTGGGGCTTGTCAGCCACGCCTAGACATTTCAGAAGTAATGCTTCACTCTATTTCCATTGTAG---CTTTGAGCATGCACtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagtgtgtgtgtaagtgtgtACATCtgtgtatgtctgtgagtgtggaagctagag------gacaaggaag-gacgcttgggtgtcattttaatgctacccacatttttaaagggtcacagggtttggagctcacaagcaagcgaggatggcctggggccaccaagccccagggatatgtgcgtctccatcgtcccaagatatatatatatatatatcatggatctgatttttttctacaggtg--ctggaaagcaaacccagatcctaaaacttctataacaagcgccttgtcagttgaggatcccccggcccTGGCATATTATGTCATGCCTCTGAGTC------TTGGCCTCCCATTTGTAAGAACAGAAATATTCCTGTACTCG--CCAGAGATTCACATATGAAATGTGACAATATCTGTAAGACTTCCAAGCCATGTAACATGAATTCACCCCACGGCACTCATGTCATAGCTTCTCGGTGTCGGCTAAAATGGTTCACGACACTGGGTCAAGTGAAACCGATGAAGACCAGCTTGCACTTGATTCTATTGAAACAGGGAGCCAGGGTGCACACCCCATAGGTGACACCCGCCTTCCTCCATCAGAATGGCTGCGGAATACATTATGGACCCTCCCTCGCTGGTCCAGGTTTTCTCTTCCAAATTCCCACAATTGCTCGACTTTGAGGGGGCGTGGTTTATTAATGGCCTTCCCTGACTGGGCATGCATGGTTTGGAGTCCATTT--CTCTCAGGAACTATGTACGTGAGTTCTTCTTAGACTTTAGAAAAAGCCTTAGCAATAT-------GGTGTCACTCCC--AGGTCCAGGATCCA--CACAGCCTAACTCTGTTAGTCCGGCTCTTCATCTTGGTGTTCTTCA
s HiC_scaffold_1 135731229 1813 + 233722169 TACCATTGGCCTTTGTTCTTTGTTATCCAGGGCAGTTCCAATTTATGTCTCAAGGTCTGCCACAATGATTAATCATATCCTC-ATGTTAACATTCAGAAGTATATAACTTTAGACAATAACATGGATAGTTAC--CG--CTATCTAGTATCAAGGCAGCATAGAAAG------AGCTAAAGCTTTTCAAGTCCAACAGAGTCTGCTTAT-TTCCCTCATTTA-CTTATTGAGTAATCTTGGGTAATTACTTACCCACTCTGAGACCAATTTTGTCCTCAGCAGCATATGGAAAATAATAGTTCATGGATTTGTTGAGATAACATGAATGCAATAATAGTATGTCTAGGTACATACACAAATGGGGATAATAACATCACCCTGTAAGACTGTTGTGCAGTTTACTTAAGATAATGAATTTATTCATAGTGATTGGTG-CATGGTACATATTCAGATACATCATTTTTGGCATGCCTGTTCTAATCTTTGCAATC----------------ACGATTGGCC----------GAGTTACTTGTTTCTTCCCTTCTAATGTTACCTCTTCTGTTTCAAAAATATGCCT-TCTGTGGAAGATGCttaaaaatttactttgtatCCACAACAATTGGGATTGTTAGCACTTTT---ACACTGCCGTGAACAGTACCT--------GAACAATGTTTGGTCTAGTTACTGAGCAAAGCTCCTCAGCTTGTTTGGTATGAGCATGTAGATCTCAGAATTCATCTCAAAAATCCAGTCACTGTACAGTCCCAGCAATGACCTTCTACTCCTGGACATTCAGGGAAGATTCTTGATCTTTCTCTCccaagagaaaatgtcttttagtCTCCTTCTCCATCTTCAAGTAATTTCCATTCTACTTCGTTATATATCAATtcttggttagaattttaaaagcatgttttaaGAATACACTACCCAGGTGAGTAGTTGCTccagtgaaatat-----aaaatgtatttt-----gtgacTTATTTTACCCCAATATACCTCTT---------------------------------------CCTGTTCTCTACTGAATGCATG---TACTCTAGCACAGTGGTGGTGACCTATAGTGTGCATATGATTTTTTTGTAAATGAAAG-----ATGTGAGTGTATGAGCTGTTTTCTTTCTAAagtaaaacctcagtattcagatttaattgcag-tgttagcATTTTGCGACAAATAAGTGGTTTTGGGGTTGCAGTTTA----TGCACTCTTCTCCAAAAGGCT---------------------------------------GACCATCA------------------GTCTGCCTC------------------AGAAAGGGCAGGAACTTGCCAATTAGACACAGCTGGCCTGGAAGCCAAGT---GAGCCT-------------CATGTACTTCATGACtt--------------tctgatcttttatttaaTGTCTCTGAATCAGTCTTTTGGCCT--------TAAAAATGGGAATG---CTATACTTAttcaatgtatttatat-ttaaacacAATAATATCCGTAAGGCCACCAAGTCACATATTAGGAACTCAATCCACGTGAGTTATTTCACTTTCTCTAAGTGTTAGAAAAAATGATTAATGATAGGTGGCTAGGTTGCACTGATGAGAActactttgaatttatttctgttgggaCATAAAACCCAAAGGGACATAAAATAGACGGCATCTGGGTTACGACATAAAAATGTCTATGCAATGCAATACGAAATCTCATGCAACTATCCAGGT----CCTTCCAAATTCCTATAGTAACTCAAACTTGAGTGGTAAGAGTTTATTAATGGTCTTGTTT----------------TTTGGAATCCAGTTGCCATATAGAAACCATATGGTGGAGCTCCCTTTAGACTTTAAAAAGAGCAttggtaaaataaaaacagaaatcatatCCTGAGCGCCGGGATTCAGCCAAAGACTTCCTCGGTTAA-CTGGCT-GACAGGCAGGTGTTCTTTA

a score=55398
s chr3           149068671 4484 + 160039680 [encoded data, 4869 characters]
s HiC_scaffold_1 135735809 4233 + 233722169 [encoded data, 4869 characters]

a score=132538
s chr3           149074454 5146 + 160039680 [encoded data, 5377 characters]
s HiC_scaffold_1 135741421 4600 + 233722169 [encoded data, 5377 characters]

a score=80265
s chr3           149080389 5364 + 160039680 [encoded data, 6569 characters]
s HiC_scaffold_1 135748140 6107 + 233722169 [encoded data, 6569 characters]

a score=163651
s chr3           149086297 8111 + 160039680 [encoded data, 8720 characters]
s HiC_scaffold_1 135754268 7120 + 233722169 [encoded data, 8720 characters]

a score=79755
s chr3           149098716 3880 + 160039680 [encoded data, 4187 characters]
s HiC_scaffold_1 135763939 3829 + 233722169 [encoded data, 4187 characters]

a score=17515
s chr3           149102751 622 + 160039680 ATACATATAATTAACAGA-TTAGATGAACTTAATCAAAGACATAATATTGACAGATACTCT-GAGAC--CAGAGGGTGTAAAGAGAGGAGATAATGTCGTCCTGTTGTTCAGGGGCTAACAGAAAAGCTGTTTCTGAAACTGTCTCAGTGCTCTGTGCCCTCGTGTCGTTTCTCAGACTGAGGAGAC--AGTACAGCTCTTTTTC--CTACTCTCTGGTAAGCAAGGCAATCAATGAGACATTTCTTGAATCCATGCCTGGTTAGGGAAACTCTTGAGAATTGAAAGAATTTGATTCACAAAAAGG-TTTAGCAGCATTCACGGAACGCGTGTTCTAATTACTACATGCTG---TTTGTGGAAAAAGCAGCGCTGATTATTTCAGAGGGAAGCACGCCAGCACTACCACA-------AGCAGAATGAAATGGGGATTGTAGGCTTCTAGGCTGAGACTTAAAGGAATCCCTCCC----CAGGATGGT---------TAAACACACACGGAGATTTGAAA-----GTGTACTAGGATCATGAAAACACGAGGACATACTATTTATTAAAATCTGGGGTGGGTT----TTAGTGTCCTATATGTTTTAAAAATCTAAGATACA-ATAAAGGTATAAGGTAAAGATGTCTGTTCatttttattttta
s HiC_scaffold_1 135768856 648 + 233722169 atatatatattcaacaaaAGTAGATGAATTACAGAAAAGTCTTAATATTTACAGGTACTTTTGAGGCTGCAGAGgg---acagggaaaagaaaata--ataatatcatTCATAGAATAAAGTAAAACTACTTTCTTAAATTGTCTGAGTTGTCTCTTTCCTCATATagcttttcagattttggaaattTAGTGTATGCACTTTACAATCACTCTCTGGTAAGCAAGGCAATCACTGAGAAATTTCTTGAATCTGTGCCTGGTTAGGGAAGCTCTTAAGAATTGAAAGAATTTGATTCACAAAAAAGTTTTAGTACCATTCAT-GAACACGTATTCTAATCACTATATGctgcgtttttttttttaagc--cactgATTATTTCAGA-GGAAGCACATCAACACTGCAACACTGTTACAGTGAAAATAAAGTAGTATTACAGGCTTCTCTTCTTGGACT----GGTTTTCCTTTTCTGACaggaggacacacacacacacacacacacacacaccttaagTACCCTTGTACTA-TACTATGAGAAcagttgaaatttttatt--ttagacctTGGATAAAGTTTAACTTACTATATCATATGTTTTAGAACTGTAAGatatatgtaaaattataaagaataatcataatttcatttgttcattta

a score=37422
s chr3           149103753 2395 + 160039680 TGATAAATATTTCTACAGGAATTGGCTATATAGCTGTTTGGTGAGCATTGTATAAAATACAAAGATTTCCCAGACATACACAACATGGAAACAGAAGTTACAAAAGAAAACGCTAAGTCAAAAGCAAAATGAACATCAAGATGCAGAATTTCCTTTTG-CGGCTGGGATGCTT--TAAGCCATCAATAAAATTACAGAGCAGCAGGAAGCAGTTTTCCCATGATCCTTCTTGCTTTGTAAACACAGGATAACATAAAGCAAGATAGG-CACCCTTCCTTCTCCCTCAAGTGTCTAAACCATACTGAACAACTGTTACTGTA---TTTATATACCATCATTGAAGGACATATTCTACAAAGCATGTGAAGGGAAGAC-TATGGACATAAGGATCTGATTCGTAAAC--CATGCATTCTCTTCTCTCAGCAAGCTTCTACACTTGACTCTAATGATTAGTATGGGCAGCAAATGTCTGCAGCACGCAAATGG-AGATGTCGTAACCAGAACAAATGGCCCAAG--GCCACCACCTGCTCAGGCCCTTTTGCAAGAGCCCAGGCCTAATTTCAACAAAACAACAGAGTTACATTTACCACTTAGTTGAAAAACTGGATGAG-GAACTATTGGCAGATGGCACGCAAGTCATCTTGCTCCTTCTTTACT---AACGTGCTGAACTAAACTGTACCC----ACAGTCCTGTCTCTCCCGTACTCTATCATGGTGAGATAGTATGCTGCAT--TCAGTATTCAAAATTATATTCAGAGTATGAGAGGATAGACAGCCAGGAGGGGTAGAGATCAGAGGACACACAT-----GGTTCTCAACTC-TCTGAACAGAGT----TTGGAAAATACACAggcagccatacaaatgattgcctgaacgcagtgcttttcaagtgtgtggg-gaagatattattagttacatcaaacaa-ttggtataaactgggactgtccctagaaaattggattgtatgataaacct--------------aTGGCTAGAGGGCCA--AGGACCTGGAG-------------------TACT------------GTGTGACTTTCTT-------GACCCTCCCTCCCTTCAGCCTATTTTGGCATTGC-------CATTGCTTCAAAA-----------GCAGTAGTATCACATGATGA-------------------------------------------------TTTCATGTTTGTTTCTTAGAGACATAATGAGGAGAAATGGGATGTTTGGAAAAT---CTGGACACACCTAATATATTTTAT----------------TTTTCAATCTGTTGCACTAAAGAAGCAACAGAGGT---GGTCTTGAGATC---TGGAGGTGGGGATAG-------ATCAACGCATTGGC-TAAAgggttggctccatggctccatg---ggtgaaaacacttgcttctggct---------------gtgacaacccgagtcatatcatttgg-acctttacgtagaaagacagaattgattcctcaaagttttcttcccatcttcaaaggta--tatcatgcatggta----tgtatatacatacCATA---GACTATGTAGACCTATACCTGAGTA-CACACACACtaaataaataaaatatgtattaaaataatGCAATGTGAAATATTTAAAT---------AGAGGAAAACTTTAATTTTTAACTGGAAACCTCATTTATAATGTATTAATAGCTTCGGAAGGCCTTCCTATAATCCCATAACTTCACCTTGAACTCTGCCTGTAATAGTAAATCATTACTCCGTGTTTATCTCCTTCTCTTACTAGAACTGCACGCCTTCCAAGGTTCAACCACATTTTATCCATTATTAAATCATGGAGTGTTTGATCCAAAGTAGA--CTCCAAA-ATGATCTTTGATCAAATT----AATATTGATCACAAATTTA--------------GAGAGTTTTCTCTGTTTGGCCATTAATATTCCTCATTTGATCACCGCCAGAGTTTATTTTCTTTTGAGTTTTCTGTTTGACATTTTTTCAAAGTCCCACCCACCCCTCCTCCCAGTTCCACTAAAATCTAGAAAGT-CGGCCCATAGGAAGGCCTGGGAACTCCATGTGTTATCCTCACAAGACATCTTTCTTTGGCAACTCAGGAAACGCCAGTTTAGAACTTCAAGTTGTATGTGGCTCTGTGCAAGGCGTCTCCTTCCTTGCAAAGGTATTGTTG---TTAGTGAGGGGATAACAGTAATAAAGGTAAGGTTACGGGTTTTATTAGCTTGACACAGAGAAAACCTACGGCCGTGTCAAAGACTGTGCCTGCGCCCTCAGTGAGTTGTCTTAGGTCA-CAGAGTGGAG--GACTACTCAGAGCCGGATCATTAACTTCTGGAAAAACAAACAACT-CTGGGAGATGTAATATACAAGAGCCAAGGCAGT-TTAACTTTTACAGTGCTGACACAAACCAGGTCTACCA---AAGGAGACACA---CTTAAAACCTGCAT--TTTTGTCCTGTTCCCTTAGACCTGGG----------AGTCTTCC----TTCTACAATGGGCTGACTTAGCAGGAAAGATC-AATTCTAACTGCTAGAGACTGTATCTAATTCATTGCTGGAACGTCCAC
s HiC_scaffold_1 135769502 2556 + 233722169 tagtaaATGTTTCTTGAAGAATTAATTATAAGGCTTTGCATTAGACAGTATGGGAAACACAAAGATTTTCCAGATATAGACAGTTTAGCAGCACAAATTATcaaagaaaat--taggaaaatagaaaa---------------cagcATTTCCCCTTGACAGCTGAGATGTTTCGTGAACTA-CAGTAATATT--------TAATGCAGCATTTTACTAGTGATCTTTCTAACTTTTTAAACACA--ATAGCCTAAAGCAAAGTtggacatttttcctttcctctcaaaTATCTGTGTCACACTAAGCATCCTTTATTATAATACTTATTTATCATAGTTGAAAAATGTCTTC----AGATATTTTTGAGGAAGTCATATGAGTGTAAAGAGATGATTCTTTAAGGGTAtgtattctctttcattttcaagaTTCTAAACTTGAGTTTAATAGTAAAC---GGCAGCAAATAACTGTACCCTACGACTGGGAGGTTTACTAGGGAGACCAAATGGTCACAGTGGTCGCCACCTGCTCTCACCCTCCTGAAAG---TCAGACCtaattt-aacaaaataagaaagttaCAGTGATTGGTTAG------AACTGGACCAGTGAACTCTTACCAAATGGCATGGAAGTAATTCT--TTCTCCATTACTTGAAAAGTGTTTAAGCAGACTGCATTCTTGTATACTTTTTTC-CTCCTGTACTTTATCACGATTAAGTAATG-GCTATCTGATAGGCATTCAAAATTATATACAGACCATGAGAAAATATGCAGTAGAGTGGAGGTGAGTTGAAAGGGAAACTATCTGGTTGTTTTCAATACATTTGGGCAGAATACAATAACAAACTACAGTGGCTGTGTTAC------TTGTTGAAATTCAGTGCCGATAAATTCAGTGAAAGGAGATCCTTTTATTTACAGCAGGCAAATTGGTGTATACTGGGACTCTCTCAGGAAAATTGGGATGCACAATCAATCTCTGAATAACTAAATATAATTAGATGGTCTTTAGCACTTTGAGACAGATCAGTGAGATTAGTTACCTATGTAGGTTaggtaagatttttttaaaaactgactgcATATTGTAGCTGCTTATTTAGCCTTAACATGGATTCAttgactcaaaacaaaattttctactgtattttctcttgtttaaatGTTATGTGCTTAGCTATTTTTCCCCCAAGGAATAGTTAAGGATActttacattcatttttcttaaagttttattatataaaattgtTATAATGATAGAATTTCCTGGATA-ACCAAA---ATTTTGTAATCCAAACACAACTATGTCCTACCTCCTGCACCCC----GTGCTATATGTCTAAGGCTTGAAGTCAGATGAAGAGAGTGTTAGGCTAGGAATCAAGTGACTGGAGTATCGTTTTGGTTCTATGACTACTAGCaagttgaattttctttctttctgcctttattttttgcACAGTGATAG---AGGTGATATTGCATGGTAATGATATATAAAAAATGCTAATGGAAATCCTAGAGACT-CTTAAAATGTTTAAGGTTAAATATCTTGTTTTCTAAACTTTTATAGTCATAAAGTAAAAGAGAAGGTGCATGTTGTTTTAGGTAGCACAGAATTCAACCCAGTGg--------ctaaaataatacaatg-aaaatatgcacatcaaagggaaagaaaaatacttta---tctAACTGGAAAGCCC-CTGATGATTTGCCCATATTTTAGGAAAACTTCGCTA-AATCCTGTAACTTCATTCTGAACTCTGCTTCTAAAAGAAAATTACTACTCCTCATTTGCTACCTT-----GCTAGT-CTAAGTGACTTACAAGATCCAACTGCGTTTTATTTTTCGTTAAATTGCTCAATGGCTACTCTGAAATGGATTCTCCAAACAGAATTTTTGGTCAAATTTATTAATGTTGgttataaatgtaaataaacagaATAAGACACCTAACTCTCTTTGAAGATCAGTACTTTCTGTTTGGTCTTTGCCAGA-------TTCTTTTGACTTTTATATTTGACATTTTT-CAAAGACCTGTTT--------------TTCCATTAAAACCTGGAAAGGGTAGCTTACAAGAACTACTGAAAGTTCTATACATTTTCACTGTAGGATAC--TTCTCTGGTAAC--AAGCAGAGCTAACTTGAAAGTTAAATGTGGATGTGGCTTCCTGCAAATCATCTATTTACTTTGGGAGATGTTAACACATTCAGTGAGAGGACAACACTAATAAAGGTAAGGTTACAGGTTTTATGAGCTTTGCACAGAGAATAACTGCCTCTGGGTCACAGCTTGTACCTTCAACCTCCACAAGTTGTCTTGGGTCACCAGGAGAGAGCAGATTACTCAGTA-CAACCTACTAACAGTTTGGAAAACAAGCAGGTAATAGTAGGTTGAACATCCTAAAGATAGCACATTATCATTTTTTAGAATGCTGAAACAAATTGGAtgcatcaaataaataaatacaaagttttAGAGATGCATACTTTTGTCATCTGCCCTCTGGACTGGGCAGACTGGGCAGTTTTCCACGGCTTTTAAATGGGTATGGTTAGAAGGAAACATCGAGCTTTAATTCTTAGA-----CATACAGTTTATTACTGGCACTTCTGC

a score=61709
s chr3           149115081 4137 + 160039680 [encoded data, 4826 characters]
s HiC_scaffold_1 135777627 4295 + 233722169 [encoded data, 4826 characters]

a score=27759
s chr3           149129426 2272 + 160039680 AGGAACAGCAGATTATAACTCTTGCCTTTCAGGTTCTGTTTCATTGATAGCAAAAGAAATAACCA-----------TGGAGCA-----ACTTCATAGGTAAGCAGAAGTCCCCAGCATGGTGTCTGCCCCA-CTGTGTGCTCAGGGTT-GGAATGCCTCCTCTCTGTCTGCCAG--CAGTGTGCTGTTAGGCTGTTTGTTTTCTAAACACCAAAATATA----------CATATATATAT----------TACAA---CAGGTTT--------------AAGAAAATGTAGGAT-GCACAGTAGAAGGCTTAGAGGCATTTATTCTGTGTTTTTTGACTCTTATTTGAGCACAGATTACCTTTAGTCTCCAGAGAACATAAATTAATGGTTCTAGAGAACTCAGTTTGGGGGAAAACTGGGCCAGGAAATGGGGAAGTATGGGTAATGGCTTTAAAGCTCCTGAGAACAGGG-GAAAACTTAGGGAAAAAATTAGGGACAGTTTTTGTAGCCATCCATTCCCATAAGGATTCCCTTCCTTTT-CCAATTAGAGGCTGGGTCCCTCAGAGGGAGGCTTGCGACTTTCCCATCAAAGTACCCCTAAAGCAAGGGACAGTGAGCAAGGATTTTATCAAGAAAGCCCACAAGAATTTCCCATGTTACTCCGAAAGACATCTGTTTGTTTAAAGACAACAATAAAAAATGTTTAATTATTAAAAAGTAAATGATACTTATAACATGTATCTGAACACCTGGGCATGAGTATTCAAACTTTTTATTTCTGGTCAAATTT-ACATTTCTGAAAGATGTACTACTTAGAAAAgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCGCACGTACGCGCGCACACACATGGGGAAGAGAGGGTAAAAGAGAAAGcacacacacacacacacacacacacacacacacacacacacacGCTACAGCACATGTATGGATGTCAGCTTACGATGTCAGGAGTTGTTTTCCTCCAACATTAGATCCTGGGATTAAACCTCGGCCATCAGGTTCACTGGGCAAAACTCTTGCTCAGTGAGACCTCTCATCCGCCCAGGATGTACTTCTTTCATTTGATATTTATAGAGCATATGAAGGCAATTCCCTAGTGTAGTGTCAGACAGCCACGAGACGAGTACGTGTATTAAGGCCTTAGGTCAGTCAGCCGACACATGTTAACTGCCCATATTCATCTAGGGACTGCTTTGTGGACTGGGCAAAACGGCAGAGAGAATATTTGCCTTTAAGAAT-TCTTATTATCTTTTATTTTATGGATGT-----------------GAATATGAAGAGGAGAGAAGACGTACAGTCAATCAACTTATG---GACTTGTAGC--TCAGTTTCAGCACCGGGGACGTGTGAGAACGGTGGGACAGAGAT-GAATACTTGAACTGAAGCAC------CAGGGAGACTCTAGGAATGGGCCATCCTGGGTGAAATTTAATGTTACAGGGTGATTTtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtAGTTCAAAATTTGTGAATTGAAATCTTAAGACTC--------AAAGT-----------CATGGTA--TAGTTC--Aggggttcccatgaactatttcagtgttcttagagaaacagatcaaagagcttccttcatgattgttgccacgtgag--aacactacctgaaggttccatgtttggagcaggcatagggctcttgctagacactaaacct----gcactgtgattcctgcccatctagcctccaggattatgagaaataaatatgtgt-gtttgtaagtttcctagtctgtgatgtt----------gggt------gatggaaactgatatgaacGATGCCTCACCA----TGTCACAGAGATCTTCCTGCGACAAGGGCAGAGAATCTATGAGAACACAAGGAAGAGAT-GTGCCCTGGCCTAGGCTTTC-GTGTCTTTGCTCATAACAGACTTAGTGTGGGGCCTGATGTA----TGGTTTATTTTAGAAAGTCATTCCAGAAGCACCAAGAAATGAGGTCAAAGAAGTCAATGAA---------AGATGTACTAT-TGAAGGTTAATGCTGTGCACACCAGGGCCTATTTTCCCAGGATAACACTCCTTTGTGAAAGCAATTGGAAGTGACCTCAAGAACATTCCACCAGCAAGCTAAGCAACTGGGTTGGGTAT---------CTGTCTCCTCCACATTGAC-----ACTATTCCCTTATGTTGTTCCCATGCCTTTCCAGGCTACAGCCAGGGCAGGCAGGCCAATGCATGAGGAAAGCC-----ATGGTCACGCAAATATA-AGAAGAGACACGGGTGCCAA-ATGAGGAACCTGCCATGTGCAGACAGGTCCCCAGT
s HiC_scaffold_1 135786651 2026 + 233722169 agaaattagagaaaataattcttacCTCGAAGGCCTT-----CTTGAGATTAAAGGGAATAATCACCCCTTTAATCTGAGGCACACAAACCTCTCTGAAAAGCA------CTTAGCCTGAAGTCTGGCCTGGAAATGTGCCCAGGGTTCGGAACACCGAC-CTTTTCCTGTAGGGTCAGTGAAGAGTTCA-CTTCTTGTTTTCAAAACCCCTAAAAGGGTTTTCAGGGTCAGATATATTTGAGGGAAGGCTACAAGCACAGTCTTTCATtggtaaagggaaaaaaagtcacGTTAGTATATTAAAGGCTCTAAGGAGGTTTAATCTGTGTTTTCC-AGTCTTATTCGAGTGAGGATTGCCTTTAATCTCTGGAGAATATAAATTAATGGTTCTGGAAAACTCAGTTTGGGG-AAAACTGGGCCAGAAAATGGGGAAGTATGGGTAATGGCTTTAAAGCTCCTGAGAACAGAGCAAAAACGTAG--AAAAAATTAGGGACATCTTGTGTAGCCATCCATTCCCATtagagtttctttcctttttccaattAGAGTATGGGTCCCTCAGAGGAAGGCTTTCAGACTTTCCATCAAAGTGCCCCTAAAGCAAGGGACAGCGAATACTTATTTTATCATGAAAGCCCTGGGGGATCTTCCATGTTACTCCACATGATATCTGtttgtttaaatataaaaaataaaaat-tttaattattgaaaaGTAAATGA----TGTAAGACTTTCCTACACACACAGGC--------CCACATTCT---TTTCTGATCCTATGTAATGCTCCTGCAATATGTGCT--------AGGTTTTCATGC-TGATTGATTG------------------------------------------CATGGAGCAG---------------------------------------------------ACTCCCACACGTAACATCCC---------------------------------------------------------------------------CAGCCTCACGGAG-----------------------------------------------------------------GAGGGCATGGA-------CCCCA----------------CCAGGAGAAGA--------AGCAAGGCCTTCGGTCAGCCAGTCTATAAATGCTAACTAGCTGCTCTACACTGAGTAATAGCTCAGGGACCAAGCAGGAAGGCAGAGAGAATTTGTGCCTTCAAGGAGATCTTAAAATCTCATGTCCCATAAATGTGTTTGGGGATGTACACCGAGCATGACAAGGAAACGAATGAGACAGCCAATAAACTTGGGAATGACACGGAGCATTTAG---CAGTCACGAGTGC-TGTGAGGAAGCGAGGACAGGGAGAGAGTGACTGAACACAGCCACTTATAGCAGAG-------AATAGCAGGCCTTC-----TGAAG-----------AGGATGCATTCG---------GACTTTGTGAGGGTCTGCACCC-------------------------------------------TGAAACGCATTCTAAATCCTCTCCACCAGGAAGTGGGGCCGTCTACAAGGTAATTAGATCAAAGGGACCCCCGTAAGTAGAATTAGTGTACTTATAAAAGCGGGTCAAGAAAGTTGCCCCATCCCT-CTGTTATGTGAGAAAACACTGTCT--AGGCACCA-----GGAGACGAAA------CCTCACCAGAGCTCAAATCTGTCAGCACCTTGTGCTTGAACTTCCtggcctccagagctgtgagagaTACACTGCTGTGGTTTATAAGCTTCCCAGTTTGTGGTATTTTCTTACAGCAGGTTAAACAGACTAAGACAGACAAGGAGGATGGTAGGCAAAGGTTGGTGGGGAGAGCTTTCTGAGCC----GCAGC---------AGCGCCCCAGTAAGAAACAGCAGCCAGGCATGGGTTTTCAGCTGAGCTGCTTGTAACAGACCTGAGATAAGCACTGGGGGAGAGGCGGTTTATATGGGAAA-TCACTCcaggaa-atagagaaaaggagCCAGGAAAGAGAGTAAAGCCAAAAGTGGGTGTGCTGTAAGTGGGTTACTGAGCTGGATAATGGGGTCCATTTCCCTGGGCTGAGGTGCCTTCGAGAAACCCTCT----GTAACTTTAGGATCATCCTACCA-CAGACCGAGGA----GGCTGGACATACGTCCTTCTTGTCCCCCACACACTGGCTGAGTGCTATTCTTGGGTGTTAACACCCCTGATGTTGGGGTTGTGCCTGGGGTGCTCAAGCAAACTTCTGAAGAAAGCCCTCAGactgacacagagagacagaggagagacacAGGTGCTAACAGTAGGAAACT-CAGTGAGCAAACAACTGCCTCGT

a score=9946
s chr3           149133131 356 + 160039680 TTCTCTTCATAATTTATTTTATCATCACTTGGACTCAGCTGATAT--TCATTTGCTTGTTATTTGTCTCTCAGGCTGGATTAAAAACATCAATGTCCTGGGGCATTTACTTGGTCTTTTCTGTTTAATTCTGTATTTCCGGGTTCTAGAATATTACCTGATATTTAAGAAATGCTTGGAAAGGGCTTGGCTGAATATACCAGTGCGTGACTCATTTTTGA----------------------TTTATATGACT-----------CGCAATAAGTATTTCATGGACAGGCAAAACATGCTAGGATGGGAAGCATCAGAGCCAAGAATGTCACCGCTCGTGTTCAAAGACC---CAAGGAGAGAAGTAGAGTCAATATCAAGGACATCTTTTCAAA
s HiC_scaffold_1 135791044 388 + 233722169 TTTTATTCATAAGTTCCTTTATCTTTACTTGAGCTCAgtttatatgtttatttgctgGTCATTTGCCTTATTTATTAGTGTGTAGGCATCCTTACACTAAGGACTTTGTTTGGTCTTCT-TGTTTAAAGCTGTGTTTCCGGATTCTAGACTCTTACTTGGCCTGTGAGAGGTGCTTGGTAAGCATTTAGCTGAAT----CAATGaatggatgatttttaaaattttatatcaataGAAATTTCTTATGTGGCTAGAGGAAGCCATGCAATAAATTCTTGATGG-CAGGAAAACCATCCTGTGACAGGAAATCTCAAAGCCAACAGGGTCAGAGCCTAGATTTAAAGATCTTGCCAGGCAGAACCTATACTCATcatcaggaaaatatttaaaaa

a score=18159
s chr3           149134368 1491 + 160039680 GAGTCAAAGTACTCAGTTttgtggttt--aaaatatggtgcctagccgggcagctcaggactagtcggtcaatctgttagacatgcagaattgaatcaacagctctaaggcagcctactgaatcaatatctacacttgaacaagatccaggggatttgcatgcattttacaacctaagaCATGCTAATACAGACCACAAGGGCACAGCTGGGCTGGAGAGAAGGGCATTTGTTTTCAACATCCAGAGATGTGTCAGAGAACAGTAAATCTACTATGATCTCTAACTCTGATGCAGATTAGGTCCAGAGACAGGAATGAGGATGGCGGGAGGGGCTGTGAAAATGGACACCAT--GGCTCTGGTTCTAGTGGGAGGACAGTTACTGAAACAGAAGCACAGGCATCATTCAAATGTCATATGTGGCAACTTGTAGGAGACCTAATTGGAAGGGTGAGGAGCTCTCAACTGTATGTTATCCCAGACAGTGATGTAACAGGTGGGTGATG--TAATTAAACCTGTATTTTTGGGCTCGTGTTGGCAGAGTCGAAATTCTCAATAGGCTCTTAAAGAAGGCACAGGGGAAATGCTTTACCTGCCCTGCAAATGGTTCCAGGGACCCAAGTAAAAAGTCTTGGAACAGTGGTAA--ACACCTGTTATTCTAACACCCCATGGTAAGCTGGGAGGCACAGACAGCAGAGTCAGCCCAAGCTCACAGGGCATCTGCCCTAGAGTACACAGCAGGGCAGAAACAAGAGAGGCCCTGCTCAGCAAGACAGAAGGTGAGAAACAAGTCCCCAAACATGTCCTCCACCCCGCACATATGCCACAGCCTCTGCTCACACACATGCTTACACACATATCTTTTTAAACAATAATAATGTGAAGATACTGTAAAAGTGAGAATAAGTGGCA--TTTTTCTTGA---TTCTTCAAAATAAATGTATTCAGATCCACAAGTCTCTGATATCAGCTCATATGGCCTTTTATATTAGTCACCGGAATACTTAAAACATC---TAAGATTAAGCGAACACACAGAAGC---AGGGAGATTGGACAGTGCCTTGCTTGGTTAGCTTGGCTAAGATTCTGTCAAATTATTTTCTTTAGAAATATAAATTTT-ATTTCCACACCAATAGCAAAACTGA---------CTTCTTTTGCCATTTCATATAATTATTTTTTACAATTATGAATTTGAGAGTTGTGAAGCACTT------ACTTATTGTAAAGCCTTGGTGTGTTTGAAAGTTCCTTTCAGCTGCTGATCACATTGAACGCATA-CTTCTCGTGCATGCCACCTCCTGTGAGATGGGT--GTGCGGGGTTCTCTGTGAAAA------GGTAATAATCTGGCAAAGCT--GCCGAGAAAGAAACCTGAAGCCC----AAGGTGTATGATTAAGAACAGAAATGGTCTCTTTTCCTATTTAGAAGGTATTCT---------ACTCCGGTATTCTAAGTTTTGAAAATTACAGCTGAGCTGCTAATATGTAAATTATAAATGAATGAGGTAGAATCAGGC
s HiC_scaffold_1 135794864 1200 + 233722169 GAATCAAGATACGAACTTCTGCTGTTCCAAAAATGTGGTACCC--------------GAACTGG-----AAACCTATTGAGAATGCAGAATTT------CAAGTCCCATCCTATGTATTAGATCATTACTTGCATTTTAATAAGATCCAGAAGATTAGCACTCAGATTAGAATTTGAGGATTGCTAATCCAGACTACAAGGTCAGAGGTAGGCCCTCCGTAAGGTCGTTCATCC-CAGTTCCTACAGTTGAGTCACAGCATTCTAAATCTCCTGTGCTTTCTGGCTTAGGTCAGGATTAGATCCAAAGCCTTGTGTGGGGC---CAAGAGAGTTTGCACAAATGGGTGACAAAAGGCTTTGACTCTAGGGGCACAACAGTTAATAGAACAGAGAAAGAGGCAAATTTTAAGTCCCATGGGTGACAACTGATAGGAGACAGGATTGGGTGGGTA----------------GTTTGGTTCCAGACTGT--------AAATGAATGAAGCATAGATGGATCTG-GTTTTAGAGCACATG--------------------------------------------------------------------------------------------------TGTAACATTACTGATTAAATCTGT--------------------ATTTGG------------------------CAATCTCATA--------------------------------------------------TTGGCAAAGTAGGAATTTTGGA---------------------------------------------------------------TACACA----------TAAATAGTAATGATATGACAATAGTGCAAGAATGA-AGTAAATGCGagttttttccttattcttcttCAATATTAATGT----AGGTCCACATGCCTT--ATATTAGGT---------TGTTAGtttaatcacaaaaatatttaaaacgtCATATAAAATTAGAAGCACACGTAGAAGCTAGCAGTAGATTAGAAATTGTTTTGGTTGGTTAGCTTTGTTAAGATTCTGCTAAATGCTCTTCTtcagaaatgtaacttttaatttCCATACCAATAGCATGGCTGGGATGTGGGCTTTTTTTGGTTATTTCATACAACTA-TTCTTACAATTGTGAATTTTAAAGTTGCaatacattttacatatttttttgtaaaatattggTACATTCAAAGATGTCTTTTGGCTGCTAATCA--------ATATACCTTCACGTGTATGTCACCTCATTTCAAATGGTTCAATGaacgatttttt---aaaattttatgtcaaGAATGTAAGAAAACTAAGACCTGAAAGAAACATGAAGGTCCTTTAAGGAATGTTATTTGGAATGGAAATCAAC-CTTCTCCTGTCACAAAGGTTTTCTATAAGACacattctgctatttt-tttttttttaattacaattgGACTTTGAGCTTGTAAACTGT-ACTGTCTCAGGCAGGGTCACGC

a score=33850
s chr3           149136594 1043 + 160039680 AATTTCTAAAAATATTCATTCTATCCAGCAGTAGGAAGCATGCTTTACATTGTGACCCA---------------AACATA----TCCATTTATGTGTATGTATTTATTTAACCAAAAAATATTTATCTATTAGCTGTTCTATTCCAAGGCTTCCTTTGTTCTATTTGATACGGAAAGAGAAGTAGATGTGGTATTTATATTCTTAACATAAACTTTAACTTTACCTAACAGTGTTACATAGCCTAATATATTCTATTCcaatctaatatttccattttttcaataatctattctcttcccttttccagagaaatactgcttatgacccactaaattgatttaacaatgtgcttcagggtaccaaccattagtttgaaaaTATTGTCTTAGATAGTGTCAGACCTGATTTTATAAGTTAAGGGGATATGTTTGTTAATCCCTGTAGGCATTTAATATGATATATCTAATACCAAGAAGAAATGCAGAGTTGGGCTCTGTGTGTGG-GCAGTATTTTTCTTCCTTGAAGCTTATATGAGTCACCCTTTATGTTTATTACCAATTATTTTCAAAATATCCTTAATGTCTTTTTCAACCAGAAGCCAATAAATGAAGGTTTGACCCTAGGTGTAAGCTGTCAAAGTCT-TAAGAGAAATGTGT-------------GAACTTGTGGTCTCTCTTGCATGATAAATTCTACTGTTAGATCTACTTTCTCTACCTGGGAGACATAAGGCTAACTTCCTTCCTGAACTCTCTAATGAGTTTTGCAAGTGATATATAGTCTGTGATATAGTTTCTATCTTCTAAATTACATATATATATATATATATGATCTTTCAGCCTTAGCTAAGAGACATCATGGTATTTCTTT----------GAGAGGTAAAGAAATTTAATATAACATCTAAATATTTGTAAGCAATGGACCATTACCCTTTCCACCT--------AAAACTGTGTTGTCA-TACCTGTGGTTCTGACACATG-GCACTATTTGATTGG-CAAGGATTGAAGTGCTAGATGAAGTAAGCAAGAATTCTCTTCAACTTGT--CTGGGCTAGAAACTATTCTATGGAGGAAAT
s HiC_scaffold_1 135797202 1055 + 233722169 AATTTCTCCAAATTTTTCTTGTA--CTACAttaagaaatgtgtttt-tattatgaGCCATTCTaaagtgattaaaaaataaaaatacaaatatgtgtATACAGTCAttcatttaataaacaaatatttattagctGTTATGTTCCAtgtatttttctgttctatttgctGAGAAGACAGTAGCAAATATGGATTTTACATTCCTAACACAAAC---AACCATA--------TATCATGCAAGCTAAtccatattattttattctaatcttttctttttaaaaataacttaatcTCTTCCCGTTTC--AAAATATGTTGTTCATGATCCACTAAACTGATTTAACAATGTGTTTGAGAGTACTAACCATTAATATGAGAATACTACCTCAGATTGTGTCAGATCTGAATTTGTAAGTTATAAGGATGTTTTCATTAATACCTTCAGACATTCCATATGATCTGTTTAATACTATG-GGAAATACATAA--GTGCTCCATGCATGGTATTGTTATCTTCCTTTTGAAAGCTTATATGATTcaacctttatttttattactaattcttttcaaaaaaccctttttattttcttcaactaAAAGTCAATAAATGAAGCTTTTGCCCTATGTCTAAACTGTCAAGGTCTCTAAGAGAAATGTGCTTTAAAGAAGTAGGAGTTAATGGTCACTCTTGCACTATAAATCCTACTGGCAGA--TACTCT-GCTAGCTGGTAGATATAAGGATGACTTTCTCCTTGAAAACTCTAATGAGACTGAGGAATAATATACAATCTGTGATGCAGGTGCTATTTTCAAAATGTGAGAGCT-----TTTAAATAATCTTAAAACCTTATCTAAAATAAATCACATTATTTCTTGTTGGTTCTTAGAGAAGGAAAGACATTTAAGATAgttcataaatatttgtgaagtaaAACACATTCGTTtttcagccttaaaaaaaaaacccattctCTCATTGGGAGAGGTTATGACACATGTGTGCCATTTGGTTGATTTAGAAGCGAACTGTT------------------TTCTCTCCACGTTGTGCCTGGAGAAAGGACAGTGCTGTGGAGACAGT

a score=35801
s chr3           149139275 1859 + 160039680 GTTTCTGGGGTCTCTCATAACTCCCCGTTCTGAATCCCTTTC-------ACTACAACAAGGTTGAACTTGCACTTCTCCGTGAGTTCCCCCTCTGTCTGGCTGTGGTGAAGAAGAGTCCATTC-ACTTCGCTGTCTATTTCCACTCAGAACGAGACAGAT----GAACTTGGGGAAGGGTGATTAGTCTTTC-GAGCCTTGGAGTTTTCACGAGGAAAATGGATGTGTTCATTGTTCACGCTAGTAAGGTCGTTTTAGGAGTCCATAAAATAGTGAGCATAAAGTGCTCAGTGGAATTGCAGG-ACACAGCAAACT-TTCTGTGATTGATGGATATTATTATCACTCTTATACCTAACGATTTCCTGACCTACCTCAGTGCCCACCCCAGGCCTGAGAAGCCCAACTCAATAGAGGCCCGCC--TTTCTTGGATGCACTCAAGAGGTGGTACAAAGCAGTTACTCTGGCCTAGGGAACCTTTAATAAAGTGTCTACAGAGCAGATTATGGGGAAAGAGAAAGTCATTAAGGGCACCAAGCTGGTTGGATAAATTGGATACATATACT-----GAGTGCTTTTTTAACGGTCATGTGCTTTTATTCTTAGATGTGCTTTGGGAATATGCTTTTAGTTTGCATGACTTCTGAACCCATTACCCATTTCTAGaataataataataacaacaataataataataagagtaataGCTAACATTTACTGAAAATCACTAAGGGTAT----AGAAACCTTTGAAGTAGGCTGTGCATCTGGCTTGGTATCATGGCAATGGTTAAAGTATTGAAGCAAAGAGAGTGGAGCTCTCTCCTCCCCTTGTTTTTAACTCAGCTCTCTCCACCTACCCG-CCACCGCAGCCCTTCACCATTCCGCTGCTCACGGATGTGTAAGTCATCATTAAG---------TGTGTAACTGCCAATTTTCTCTTCCTACTGGTAAAGTATATGTACCGATGCTTTCATTCACACATCAGCAAATATTTATAAACGCTTGCTCTGAGGTACTGGTCGAAGGAATCAGGTAGAACATTCCCACGTGGATCATGTAGTCTAGTAACCTAGAGAGTCC------CTGTGTCCTCTCCCACCA--CCAATCAGGGTCTTTTAGCTAAGTACCCACTTGTGCCAGACTTTACATGTTTTGTTGTTGTTTTATTT-TTTTACATTTCTCTCTCTCTGTCTGCCCCTCCACGTAacacacacacacacacacacacacacacacacacacacacacacacacactgtgtgtgtatatacatgtatatgcacacaagccttggtacaggtatgactgtgcaaggacaatatgcagaaataggttttctccttcctctgtgtgggtttcatggatccagttcatgtcatcaggcttgatgggcgtggtccttagttgctgagccatctggccagcccACTTGTCCTGTTTCACATCTCGTATCAAAGTACAGTTGATCACTAAA--GCAATAATTCTCTGTAGTAAGTCTAACTTGGTCTTGAGTGCTGCTTGCTGTCTTTGGTAGTTGGCAGCTGAAGTATAGATGGGGTGGAGTCCTGCAGGCAAGT-TCATTGGCGCTCCCACTGATGGAGTT------TGTAATAGTGTTTGGTCTCTGTGTTTTAAGTCTCATATTCTCAAAGCTTAAAAGGATTTCTGATTGTTT-AGGGGGTGTGCCATTTTGGATAGTTAACTGTGTCAGAGTAGAAAAAAGACAGCTGAGATTGCCACCAGCTAGCCACTCTTCAAAGCCAAATGAAAGAATG-AAATTCTTTGGTGACAGCTTTT----AAACAAAAAACTTTTATCTACATAGACTCCACAGCTCAGTGTATACAAGTGGGGATGCTCTTTCTAAATGAGATTTCCTTTAAAGATGGCT
s HiC_scaffold_1 135799308 1608 + 233722169 GCTTTGGTAATCTCTCAGAGTTTCAGGCTCTGAATTTGTTTTTAGCTGAGTTCTGACAGGAGGGA-----CAGTTCTGACTCAGTTCGTGCTCTGTCCTGCTGTTGT-------AGTTTGCCCTGTTTTCCAGCCTGCTTCCATGCACAAGGAAACACATCCATGAGGGTGGGAAACTTTGTGTAACTGTGCTGAACCTCAGCATCTTCCCAGGGGAAA--GAGTTAATAATGGTGCATtctgggaggattgttgtgagagTACATAA--CAATAACAGTTAAGTGCTTAGTGGAGTACCTGGCACAGAGTGAACTCTTCACTGAATGACagttattgctatta---ttattcgCAGCAGCTGCATAA---ATCCCAGT-TTCACTTGTGCCCAGCTAAAACCAGTGCAGAAGGATTGTGTTATCTTCTTGGATTTCCTGAAGAAGTGATGCTAAATAAATATCCTGGGGTGAGGAACCTTTTACAAAACATC-ACAGTGCAGATGATACG---AGAGGAAGGCGG-AAGAGCACCAATCTGGTTGGATGGATGGGAT-TATATACCCATTGAAGTCTTTTTTCATTGGTCATGTGTTTTTATATTCACATGTGCTATGAGACTATGGCTTTAGTTTTCATGACTACTGAACCCATTAtccatttctaaaat---------------aataatagtcaTAATagtaatagctaacatttacCAAAAGTTACTGAGGGTGCTGCAAAAACCCTTTGGAGAGGGATGTATGTCTGACTTGGCAACATGATAATGAATTAAGTATTGAAGCAAA-AGAACAGTGCTATGCCCACCCCTGATTTTTAACTCAGCTCTCCCTGCCTGTCCATTCACCTCTCCCCTCCTCCATTCTAGTGTGCGTGAGTGTGTGAGGCACCAATAAACCGTATGACTATATGACTGCCAATTTTCTCTCCCTACTGGT-AAGTAAAGGTA-AAATGCTTTCATTCACACATGGTCAAATGTTATAAAATGTCTGCTCAGAGGAACTGGTCAAGGGACTGAAATAGAACATTCTT-CATGGACCATCTAGTCTGGAGGTCTAGAGTGTCCCATAAGCCCAGTCTCTTCACGCCAGGCCAAT---ATTCTCTTCACCAGAGAATCTTTTTTGCTAAACGTCCCAtg------tgttttttcatgtattttaaatg------------------------------------------------------------ataaaaatactttCCTATTTTAT-------------------------AGCTTAGAGGAAAGTATAACAGT--------------------------------------------------------------------------------------------------------------------------------------------TATGAAAGCACAGT---TCACTAAATGGCAGCAACACTAT----------TAACTTGGGCTTGGGTGTTCGCTG--GTCTTTGGTATTTACGAGTTGTGGTTGA----GGGTGGAGTGCTCCAAGGAAGTGCCCTTTGAAAACTCAGTTGAAAAGCTGTTTCATGACACAGTGTTTAAGTGCTGCGTGTTGGGTCTCAGGTTCCTGTAACCTAACACAATTTCTAATCATTCAAGGGGATGTGTCCCATGGTATGGTT-ATTGTGTCACA-TAGGAAAAATACAGCTGTGGTTACTGCAGGCTAGTCACTCTTTAAAGACAAACGAAAGAATGAAAATCCCTCTctgatagctttttaaaataaaaaaaaattttaactacaTATAATCCACAGTTCAACACATATTGGTTAG--------TTTTAAATGTGATTTGCTCTGAAGATAGTT

a score=87843
s chr3           149145203 4133 + 160039680 [encoded data, 4587 characters]
s HiC_scaffold_1 135805805 4123 + 233722169 [encoded data, 4587 characters]

a score=47248
s chr3           149151512 2905 + 160039680 CTAGAGGGCCTAGATCTTGTCCAGTTAAAGAGAAAATA---TTACTCTGCCTATTTAGTTCCTCCACAAATATGGACTAGGGAGTGTAAAAAAGTTGCAAGGAGTTTAGAGATATTCTGCCAATAACAATCAGCACGGTGAACTAG-CAGAAGTGTTTAGGGAGGTAGT-GCCAGAGGCAGACATGGTTctggttttatttagcacatttaataatgatctggaa-agggggaaacacattaaaatcACAGATTATCCTAAATTGACAGGTGGTGTAAACACAAATGAGGGCAAACAAAAGGATATAAAGAATTTAGAACAGAAATGAGATTCCGTCAGGAAAAAAAAAGCAGAGAGAGAGTGCTCTTACATCTGCGT-GAGTATCCTAAATCAGCAATGGAAATTGTTGGAAGACTCGTTTAGCTCAGAAAGCATTCCTAGGCTTTGCCTACTTTTATCAGTATTAACCCTGTCCCCAACAGTCATAGCTCTTTTTATTCAGCCAGATTAAACTGATTATTCCCAACATGTCAAAACACAAATCTGCTCTTGCCATTCCTCTG-------CTCGATGGGTTTTCTTCCAGAATAAGGCTAAGCTCACAGGTCC---TGCAGGAACCTCTCTCCTCTCC-------------CTCCTCAAC--CTTAGCAATCTGATATG----TCCCACTGCTCC-------GAGTATTTGCGAATTCCTAACTGCAT---------------------------------------CATGCCTTCTT--------ATCTCCAAAGGACCTTCAACACTCAGTTCTAGCCCCACTTCCTTCCTAGACT------CTGAAAAACCGCTGCGCATCTCTGAGTTCACTGTGGTACTGTCTTTG---------TCACTGCACCT--ATCAG--ACTTGTTA-------GGAATGACAGTGTAAGTGTTTatttgttgagcaaataactatgttccagactc-gccctgtgtgaggccttttacattcattatctttgtaaccatcacagcCCTCTTAGCATGATGCACAAATG-----ATCTTCATGCAAAGGAGATACAAAGTCCGTGTTAAGT-------------------TCAACAGCCTGTGCGTGACTGAGC---------------------AGCTGATGCCTG-AAGATTATGCTGTtattggaattcatttccttgtctccctcctgagctgggcacactccttgaggacagggaacatg-tatgattGGCTAGTATCTAGAGTTCTTTGCATGGTACCCACAGCTTTATGACAACATCAACAAAGATAATTAATACTTTTTTGGGGGGGtcgagacagggtttctctttgtatccctggctgtcctctgttcactctgtagaccaggctggcctcgaactcagaaatctgcctggctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgcctggcAGATAATTAATCATTAATGTGTGCTAATCATGTGTCTTtagtagccatccaagcaggtatgaggtgatcgctcattgtggctttggtttgcatttctccaatgagtagacattagtcacatttgtaca-tcttgttttggagaaatgcctgtttaagttctgagctgattttgaagttgaattcttagtctAtgtgtgcat-gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCACTGTT---------------GATTGGCTTCATGCTTCTGCATAGGTCATTTGGCAAAGTGTCCTGAGA--GAAAGTAAGTTTGCACCATTAGATTTCCA--ACGCAGTACTTGGGAGAGACCAGTTGGATGGAGCGCATTGGCT-------CCCAGGCTCTTATTGAAGCCATC----TTCTTTGTCTGAGCCACTCTCTTCCTCTGAGGCATTTGCTCCACAAA----TTCTTGTGTTAGCAGCACA-GTCATCTTTAGTTTCTCTTATTCTAAGAGTTGGCATCTCTTATCATGATTTTTATTGCTATTATCTATCAAGGTAGAGGGGATTAGCAAAGTCCAGACCCAGGACATTGCCTGTGAGACACAATGTGTTTTG-TTTGGGTAGGATTTGAATGTGTCTCTCACGGGGCAATATGTTGGGAAGTTGACTCTT-TTATGGTGCTGTTGGAAAGCAGTA--------------GGCCTGCTGATGGTTACTA------TCTGCATA--------------------------GTCTTACTATGAGAT--------------------------------TATTTGCCATTAAGACCTCACAAGAATTTGAGTCAACAGGCCTGCCTTTAATTATATT--TCCAGCCTTCTAAACCATGAATCAAGCAAACCTCTTTTTATTCTATAAATTATGCAGCCTCAGGCTTTTTGTGATAATCACAAAAGACACTTTTACTCCTAAGGGAAGTCATGTTGATCTGGATTGGGAAGAAGTCTTTCAACGTAGCTGTGCTATGGGGTC---------ACTTCTCAATGTATTCACTTTCTCACCTACAAACT-GACTCTTTGCCTGTAGACCCCAG---------ATCACCATCACGGGGGGGGGGGGGGCGTGTCAAATAAATTTCAGTTTCTGTATCTCAGTCACAAAGATTC-AACTCCATC-CTTTTGTGATAAAGTTAAGAAATAGTGTTTCAGTAAA-------------------GCAGTAGATGGTTTTCTCATGTGCCACTGGACTAAGCGA-TGTATAGCTAGGAAATGATGTGACTTATTCCCTTGGCATGCTGCTTAGGAGCTTAGGGGAATGTG--TTTTGTTAAAATTGATAATTCACATATAGTCAGGCCTGTAAGATGAGAGATTTGTGTGTAATGGGCTAGGTGAGTGGGCTATGGATTTATTACATTCACAAATGAGGCTTGTGTTATTAGGAATGCTTTATAGCA--AGAAGTAATACCT-ACATTATTTAACAATTTTAAC--AGTTCAGAACTTTCCCCAGACACTGTTTTATT-----TCATGCTCACTGGAGTAATTTCTTTTTA-CAAATGAGAGAATGAAGACTTCCACATAGTAACCAATGTAATTAAAAATCTTAGTGTAGACCAGGAGCAGAGGCCCAGCTTGAGCCAGTATATTCTGAATCTAAC-CCCACAGTGAGTTCCA---TTCAACAACCGTGCCCATGTAGCC
s HiC_scaffold_1 135811479 2949 + 233722169 ccaCAGGGCCTGGATTTTGCCCTccgaaaaagaaaaaggctttgTTTTTCCTATT---------CACCAGCACCGATTATGTACACTAAGGAAGTGTCTAGGAGTTTAGAGGTGTGATGCGAATAACAATCCTCATATTGAACTAGGTGGAAACATTCTGGGAAGAAGGAGCCAGAGGCAGTGATGGGTCTGGTTTTATTTAGCACATTTAATAATGATCTCGAAGAGGGGAAAACACATTAAAATCACAGATTATACTAAATTGACAGGTGGTGTAAACACAAATGAGGGCAAGCAAAGAGATATAAAGAATTTAGAACAGAAATGAGATTCCGTCAGGGAAAAAAAAT----------ACACTCTCACATCTGTGCAAAGTATCTTAAATCAGCAatggaaattgttttaaaagtcatttagCTCAGAAAATGTTCATAGGCCTTGCTCACATGTATGAGCGGCAA----GCCCTCCCCACTCCTCTCTGTCTTTACTCCGTCCGATCACACTGTTTGTCCCCAGCAC-TTAAAACACAAATCTGATGGTGTCACTCCCAGGGCTTGGAGTCTCTGAGGTGCCATACAGGACCCGTCCACACTTTGCAGCCCTGGTGGAGGACCTCCTCCCCGCCCCCGTTTATGTCCATCTTCCCGGCCTCTTAGGTGTCTGCTCTGAGCTCCTCTGTGCTTCCATGCTGGATTATTTGTAGCTCCCTGGTTGCATCCGCACCTTATTACTAACTGTGCCATCTGCTCAGCACACCATTCCTTTCTTCTGGGTGATCTCCCTACGACCTTCAAGCTTCAGCTTTGTCTTTACCTCCTGCCCAGATTTCTGCACTCAGAAACCGTCCCAGGCCT-TGACTTTGTTTT--TGGTGCCTTTGGCGGGGGACTCACCTCACCCTGATTGGCCATTTTTTAATCTAACAAGTTGACAGTG-ATTTCTCTATTTATGGAGCAATTCATTATGTTCCAGACTCTGCTCTACAT------TTTTATCTATGTTAGCGTTGTAGTCATCAGAGCAACCGGAGGAGG-----CAAATGTGACCATCTCCATTCTATAGAACAGGTGATTTCATGTTAAGTCAAGCAACTCGCTCCACACTGAACAGCCTGTGAGTGGCCGAGCTGGGATTCAAACTGCTTTCAAAGCCCATATCTGTAAAATTATACTATtataataatttgtttcttt-tctctcacctaTCTTGAGCATGATTCTTTGGT--------CATGCCATGATCTGCTGGCAACTACAGTATCTCACATGGGCCACACAATTTAATAGTACTATCAGCAAAGATaatt-------------------------------------------------------------------------------gcctcaa-----------------------cctccccagggctggggttataggcatgtaccaccatgcctggc--------------------------------------------ttctcca-----------------CCCTTTTTGATATATCAATTTGCATT--CTCATCTCACAGAAAATGGCCACAGAATAACAGTGAAGTTCCACAGCAATCACCATTTAA-TCCCAATTTAGATACGTGGATGA------GATCAATATGCACATAATGTAGGATAGCAATCTAatctgtctgtttttgtttttttgagacacgttttcattatgtagtccagattgACCT--TGATCTCacttaagtagcc---caggctggcctgaaactctcagtgatcctcctgcctcagcttcccactcTTCAGTACT-----GAGATTATATGAGTGCACTGCCCTGCCTGGTTTCAATCTAGCATTTGTCAGGCCTATTGCTATGCTTTGCTTGGTCCACTCAGATTC-----AGCTTTTGTCTCGTGAGTACTTCCTTATACTC-CTGCACGTGCTATTTTCAGCTCTTCTTATTT------TTGGCAtattttacattgatttttacttttggtgcCTTACAAGGT-GAAAGGATCAGCAAGCTCCAGGCCCTGGATGGTATGTATGAGACACAATGTGTTATGATTTGGATATTGTTTGAATGTTACCCT-ACAAATTCCCATTTGGAGAGCTTGGTTCCCAGTGTATCAATAttgaaaagtaatatttttaagagGGGGGACTAGGTGA-GATTACTACTGCCCTCTCCACACCCCTCCCCtcactctctggcttcctgtcttgctATGAGATCATCTCTTTTGCATGAATTCTCACCATGATGCCATCTACTATTAGGTCCCCACCAGTGGCCCAGTGCATGAGGGTCCCT---GTTGTAGCCATTCAGCTTTCAAAACtgtgaataaaataaa--tctttttcctttataagttacCTAGCTTGAGGTATTTTATcataggaacagaaaatatgctACTATATGATGGAAGGCATGTTGATCTAGATCG----GAAATTTCTCAATCCAGTTGCACCACAGGGTCAATTGCTTTACTTATCTGCATTCCTACCCTCTCACCTATGAAATAGTTTCTCAGGTCTTAGACGCCAGGTCAACTGCATCACCATCCCCAGTGGA--------ATATTTGATAATTACTGATTTCTGGATTCCATTCACAATGATTCTGATTCTGTAGACTCCGGGAAAAGCTGGATaagtagtattttattaaaagacCCAAGTGGTTTTgctatagtgattttttttttcatgt--cactgaactaaatgatttttttgttaaGAGTTAATGTGACTTATTACC-AGACTCACTCCTTGGAAGCTcagaagaatatattttttgttaaaaCTGATAA--CATATATACCGAAACCTATAAAGCAACGAATTTGCATGTAATAGTTATAGTGActacttttcatatttattatgttCA-AAATGAGGACCATGTTACTAGGGTT--TTTATAGTAATAAAAGTAGTACTTaacattatat-acatttttacccagttttaaaacttttcatataCATTACTTTCTTCAAAGTTATTTTCAC-AGATTATTCCCCTTTTGTCGAgtgtgaaaaatgaaatttcc---------------------agAGTCGCGTTGGGAATCAGAAGCACAGCCAGGGTTTGATCTTGTGATTTAGGAGTCTAAAGGTGACAGTGAATCCCAGTCCTCAGTAAC----TCCATGAAGCC

a score=196479
s chr3           149158211 11050 + 160039680 [encoded data, 11977 characters]
s HiC_scaffold_1 135816853 10230 + 233722169 [encoded data, 11977 characters]

a score=40317
s chr3           149170139 4348 + 160039680 [encoded data, 4770 characters]
s HiC_scaffold_1 135827981 3993 + 233722169 [encoded data, 4770 characters]

a score=133153
s chr3           149176282 5414 + 160039680 [encoded data, 5737 characters]
s HiC_scaffold_1 135835946 4984 + 233722169 [encoded data, 5737 characters]

a score=126970
s chr3           149182063 5430 + 160039680 [encoded data, 5667 characters]
s HiC_scaffold_1 135840928 4834 + 233722169 [encoded data, 5667 characters]

a score=97353
s chr3           149188305 3371 + 160039680 CTCAGTGGCTAGTGGGGCTGGGCTCAGACACACACAGAGCATCAAATGCAAGGATTATGACTTCTCTAACCCAGGAGAGGTCCGAGTCTCT-----GGCAACCAGGGGGTACATACAGGGCCTGGATGGAGTTCC------------------AAAAGTTTGAAGAG----------GAAAATGAC-----TAGTCACAGAGTCAGGAAGCTAGCCCTT---GAAGTGCGAGAGATTCCT-GGAAGGCCATGCACGTGAAGACACTTCAAGGAGTACTCCATACAGGAAAGGGATATCCTTGTCAGACATGACAAGCCCGAGTCACAGGATCAA---GTCTA-AGCCAAGATGGGGACGGG----GACTTATATCTTATCTTTCTATTTCTTAGAGAGGAAGAATTGGAGGCTAAAGAGACACTTGGTGATATAAAAAGATGCTTGATTTATCAAATAGGAGTGATAACTGCTTacacacacacacacacacacacgcgcgcgcacacacacgcacacacgcacacatgcacacatgcacaTGCCTCAATTAATTGCTTGGTAAACACATAT--CCTTCACCCAAATTATTGGGTTAATGAGCAACCCTGACACCGTTTGCCAGAGCCCCAAGCTGCTGAGCATGTGTCCAGGTGCTGAGTGGAAGCACCTGAAATGTGGGCGAGAACAATTACACATTCCGTCAACATTTTTTGGCACCTAGCAGAGGCAGAAGCAGATTGAATCTGCTCCACACCCCTTCAGTAACCCGGATAAGGACTGCATAGC-ATCGTCTCAATGGAGGTCGCCTGCAATTTGCTTATTGCCAAGTAACCCAATTTTAGAATAGCACAAATTTTAATTATATGTTTCATTTAACTGGCACCTGTCCTTGGAGGCTGTCATTAAAATTCTAACAAGCTATGATGTGGGAACTATTATTATGTATGATTTATagagagtcaaaaataaataaggagagaaagaaaggaaaaaaagaaggcaaggaggCAGGTTGGGAAGGTTGGTGTGTTAAGACTGGTGGATATAAATGCCTGGGAGTCCC-CTGGTCAGACA---CACCACATCAGCTCTCTAGAAAGCT-CTGGGAAA--GATACGTGGATCCTCGGATTTATAGTGCTTTC-ATGTGATTTTGCT--CGTCCCACCTTGTCTGT--------GTTGT-----GAGTGGAACACTGTTCCTCAGC---AACGTGG--------TCTCCTAAATA----CCTTGACATTGAGACCAAGTTGGTTTAAAATAAAGGGTGTGtgtgtgtttgataaaatgcctcacgtggtctatgctaaccttgaactcactatgtgacccagcatggccttgaacaccaagcaatcctctgtttccaccttctaagtAAATGGACCAGAGCTAGGAGACATCGTAATAAAATTCCCCCAGCAGGTACGCTTAGTTAATGCTGAGATGCCCTGGGTTTTGGGTGCTGGTGTGACTAAGAGCAGATACTTACAAAGCACCTAAAAGCAGAAGTAAGACAGATA-TGTGCTGAC--------------CCTGGAGG--CATGGGATGCCACACCTCTCCGTTTAAT--AAACTTCAATATTTCAATAATGAAGAAGAAAAATCAGTT--------GAGAGATGCATGGAAAGGGCTGTGCAGATTTATTGGGGTAAATTAACTCATTTTGTGCTGTAAAATTTGATCATCAACACTAAACCAGAACTTCGTCGGATAATTATTTTATATTTCTGTACTTCTATTAGGGATCCTACTGTAGCTACACCTATTTCTCCCAAAAATAGGAACAGGAAAAAAAAACTTGTATTTTTTTTTTCCTTCTAGTCTCTGCCTTTACAAGAAG----------------AAGAAGAAAAGCCTTAGGTTTCTAGGGTAAGTGCCAAATATACTTCCTGTTTAGATCAAATCTAGCTTGAACTGAAATAATTAGCCACTGCTCCTGATTTTAATGGAAATGTAA--CGTAACTCCTGCTTCACAGCAACCCTGTTCTGTCCTGCTGTGAACAGTGATTTATATGAAATAATCAGTAGACTATTTCTGCCACAGAGACACGCAAAAGTTGTCCTAAAACAAAAGCAAAACGACAATAAAACCCATGACCTTTTAACCTCTCCAGAAAATTAAATAAAAAATATGCGGGGGGGGGGGGGATCACATTTTTAAAAAGCCTGTTCGGTTTGGGAGAAGACTTTACTTCCGTGTGTATATCCTCAGACAGGGTCGTGACCCTGCTTGAGTGACTACAGCTCCTGTAGCTTCTATACCTGCATGGGGGAGGATGCGAAATG--ATTTTATAATTAGAAATTCTTAATAGAATTGACAGAAAGAAGAAAACA--TTCTGGTGCGGAGAATGCGCTGGGCATGAGTGCCCATAAAACCAGAGATATTTATGCGTCTACCTGCATAAAAACCGAAACACCTAAAGAG-----AGCTAAAGA---------------TAACACAGTGAGTG-----GCGTGCATGCCTGGACTTAGCAGCAGTAGGTGTGTGCCAAGAGA----CCGCAAGCCTTATTTGTGCAATAGATTC---------TGGAAGTTGCGGACGAGGAAAATAGCTAATTCTCACTAAAACTTGTTTACCCCTGGCTGAATGGCATAGGCTTT-GGGAGTGCTTCAGTGTTCATTTTCATCCTGCCGTCCCCCAAATTTCCTGT---TGAATGACATTTTAGAAAGCTGTTGCTATTCGAGGTGTCCCTGGTGCCGGAGAGGTCCCACGATCACTCCAAAGTCTG----GTTGCCTCTCCACAGCTCGGCCTGAGAAAATTTCATCCACAGAGCTGATTCAGG-GACTTGTTTGGATCTGCTACTGGCAGCATAATACGGCATGAATGAAAAAATAAAGCCCTCGGCAGCTGAATGCCCCTAAAGAGCACTTGGGAACTTCACTGGGTGCCAAATAAAGTAGCT--CCGGTGTCAGCTGCGGGAAGCGTATTGTACTGGGCTCGGCAGTCTGTCCCGGGCGCCTATTCATTTCTGGGGAAATTTTCAGGTATTGAATTTTAATCCATGATGCCCAATTATAATTTGGGACCCTTTTACATGAGAGACTGGGCTTCACCCCATATGGCAATTAAGTCAGGACCGCCTAATACACGGTTTTAATTTCCACCAAGCAGGTGCTGCTTCCGGTCAGTAACCAATCCGTGATTTGCCTTCCTTCTGTGGATTATGCAATTTTCATTTTCATACGCCAGCGTCACCCCTTCCTGCCACCATTCAGTGTGTGTTAGGTGGTTTCCTGCCTAATCCTGTAGAGCTTCCCACAGACATCTTTTAA-------AAGTATTTGTAATT-----------TAAAAAACATTATCTTGTAGGTCCCAGTTTGATCT-----CTACTGGGCAG------TAACTTGCTTCTTTTTTTTAAGT-AAATGAATAATGGAAGGTTTATGGTATTATCTGATGCTGGGAATTAGGGGGTGGACTCTTCAGGGGTAATGGCTT--TTTACTAATTCAGTTATAGAC
s HiC_scaffold_1 135846099 3299 + 233722169 CCCAGCGGGTAGGGTGACCCAGAACAGAATCATGCAAGGTGTCAGATGAAAAGATCACGACTTTTCCAACTCGATAGAGATGCATGGCTCTCCTTTAGCAGTGTGG-------TGCAAGGCACAAATGACAATCCTAAAAGATAGCAGTCGATGAAAGGTTGAAGCATTACCAGAGTGGAAATGACAGGGTCAGTGACAGAATCAGGATGTT-GCTCTTACAGGAATGCAGAAGATTTTTCAGAAGCCTTTGCATGTAAGGATAC---AAAGGTTATTCCTTACAAGGAAGGGGTAACCATGACAAAAGGGA-GAGCAGGAGATGCAAAAAAGATATGCTTATATCCACGATTGAGACTGACACCGACTGCGTCCATGCCTTTGTGTTTCTTAGTGAGGAAGTTCTGGAGGTTAAAGAGAAACATTACAATATCATA------TTAATTGTGTAACTATG--------CTAATTACAGATATATATCTGC----------------------------------------------GCATATACCTAAATTAATTGCTTAGTAAACACATGTAGCCTCTACCCAAATTATTGGCTTAATCAAGAACAAGAGCACTAGTTGTCAAAGTCCCAAGCTGCAGAACACTTATTCagatggcaagcagaaacacctgAAATGTGAGCCAGGTGAGCTGAACATTCCATCCACATTTTT-GGCACCCAGAAAAGGCTGGCCTTGATAGAATCTGC--CGCGCCCCT--GGTAACCCGGATAAGGACTACATGCCTATCATCTGAACAGAGGTTGCCTCTGATTTGAGTATTGCCAAGTAACCCAATTTTAGAATAGCacaaattttaattatatgtttcATTTAACTGGCACCTGTCCTTGGAGGCTGTCATTAAA-TTCTAACAAGCTATGATGTGGGAACTATTATTATCTGTGATTTATagagaggcaaaaataaataaggagaggaagaaac---------aagGCAGAAAGACAGGCTGGAAGGTTTGG------AAGACTGGTAGAAGGAGACAATTAGAGCTTCCACTGGTGGAAAATAGCACCGTGTCAATT----AGAAAATTGCTAGAAAATGAAAATCCAGATCATTGAATTTCTGGTGTTTGAGATGTGATTTTACCAACCTCCCACATCACCTATTACATTTTGCTGCAGAAAGAGTATGTCACGGTTTTCTACTCTAAATTTGGAAAAAGTACATCCTAAGTAAATTCCTTGACCCTGAGACTGAgtaaattttaaagtaagttt-------cATTTGCTAAGATATTAGATAT---CAATGctactattaaa-----tat----------------taaaattcca--TATTACTTGGCATCTACCTT---------TAAACCAG----------------------------------------------TGAGGATAAGA-------GGTTTTAGGag---------------gaaaatattt--------cagtatagGAAAAACAAGATAGATAACGTGTTGgtagtcattaattttgtgtgGAGGTGCAAGGGGGTTCATATTCTCTGGTTTagtttaaaatcagtttttcccataataaaaaattaaaggaaatttgattttaaataaaagcatttaaatatttGTGCAGATTTATCTGGGCAAAGTAGTTCATTTTATACTATAAAATTTGGTCATAAACATAAGAACATAGCATCttacattaattattttatattgccATGTTGATATTAATGATCCCACTGTAATTATACTACGCTCTCTCCAAAAGGGGA---GAGAAGCTACATTTGTGT---------------AGTTACTGCATTTATAAGcagtttaaaaacaacaacaacaaaaaacagcccTAGGTTTCTAGACTAAGTGCCAAATATGCTTCAAGTTTAGATCAAATTTAGCTTTAACTAAAATAATTATCCCTTGCTCCTAATTCTAATGGAAATGTAAGACTTAACTATTCAGTGATAGCAGCACGATTCAATACGACTGCTAATGGagatttatatgaaataattagCAGACTGTTTCTGCTGTAGGTACACGCAAAATTTGTCCTAAACCAAaggcaaaacaataataaaaattacaaactttTAACCTTtccacaaatttaaataaaaaatgtgtgcTGGGAG------TCACATTAATAAA--GCTTGTTAAGCTCGCAAGAATATTTTACATTCATCTGTACTTCATCAGACAGGTTCATGGCCTCTGAAGAATTACTATAGCTCCTGCAGTTTTTAAACTGGCATGTGGAAG-ACacgaaatattattttataattagaaaattttaCTAGAATTGtcagaaacaaggaaacaagctcCAGTACAGAGTATATGCTCGGAA-ATTTGCACATAAAACTAAGTCTATGAACGGATTGACTTTTATAGCCAC--AGATGCCTAAAAAGCAAGCAACCGAACAGCATGAATTCGGACTTAACATAGGAAATGTATGTACGGGTCAGCCTCAACTTTG-----GCTGGGGTGCACAGAGAAAGTAGCTGCAAGCCTTATTT---CACAGTATTCCGAGTTGTATGGTAATGGCAGACATAAAGTCTTGCTCATT-------AAACGTGT----CCCTTGCTGAATGGCACCTGTTTTTGGAAGTATcttaatgttcatttttatccTGCCTTCCCCAGATTTTTCTGCCAATGACCGAGGGT---GAAAGCCTTTA-TATTAAGGGTGTCACTCTT--TGCAGAGGTCTCACGAATGTGGTGAAGTCAGTCCTGCTGCCTCTCCACCGCTCAGCCTGAGAAAATTTCATCCCCAGAGCTGATTCATGCTCCTTCTTTGGATCTGCTGCTGGCAGCACAATGAGGGATGAATGAAAAAA----GCACTCAGCAGCTGAATGCCCTTAAAGACCACTTGGGAACTTTATTTGGTGCCAAATAAAGTGACCTGCCAGTGTCAGCTGCGGGGAGCATATTGTACTGGGCTTTGCGGTCTGCCCCGGTTGCCTATTCATTTCTgaggaaattttcaggtattgaATTTTAATCCATGATGCCCAATTATAATTTGGGACCCTTTTACATTCCGGGCTGGGCTTCACCCCATTTGGCAATTAAGTCAGAGCTGCCTAATACATGATTTTAATTTCTGGAAAGCAGGTGCTTCCTTTGGTCCGTCATCAGTCTCTGATTTTCCTCCTTTCTGCAGCTTTGACTGTTTTCATTCTCATATCCCTACCCCAAACCCTCA-GTAAGTA-TCACTGTGtgtta--------------tatttatgtatatatatatatatatatttatttatttatttatttatttatttttggtaccgaggatcgaactcatggcctctcacttgtcaggcaggcatttatgctgctgagctaaacccccagcctacACCGCTTTTTAAAATCACCTGAATAAAGGTATGTTCA---CATTATCTAATACTTGCAATCATGAAGTAGATTCCCCCAGAGTATTGTCTTTCTTTACCAACTCGATTAGAGAC

a score=6851
s chr3           149191680 413 + 160039680 CCACATTTAT---TATTAAAAACTTACAACAAAATATGTATATAAAAATATTCACAAATTCCTTACATCTTTGAAATAATTATCTTGGGAGATATTATCTCCAGGGCCCTTTGTTTCTCTGCCTTGGTGCCACCCTCTTCCTGCAACAGTGTCCTTTTTCTTAGATTTCACCTTAGGTTTAACACAC-CAAGCCGTGTATCCATTGATAAGCTGTCTGAAGGAATAAAATACTGACGGTTACTTCCTCAAGTCCTCCATGCTCCTGACTGTACAAGTTCTCTGCTCTTCAGGGTCATC-TCCCAGCTTT---AGATGTACTGTGCCCACATGCTGAAATCTCCGCCTGT--TTGTTCCAGGGACTTAAGTCACATTCTTCAACTCAAGAGTTACAGTTTCAAGACT----------------CTCATGAGCTTCCCCCT
s HiC_scaffold_1 190312010 383 + 233722169 Ccacatttatgtttattaaaaactgacaa-aaactTTACA---AAAAGTAT---------CCCGTCATTTCCACCCCAGTCCTCTGGAGAGGCAGTGT---------------------TGCcttggaccccccccccccccagagccACGGCCAC------------AGCCACGGGTTCAACAACCACAAGTAGTGTACTCCAAGGTGAGCTGTCTGGCCAAATGAAACAGTGATGGTTACTTCCAAAGCTGCTCGATGCTTCCAGCTGGACCGGCTCTGTGTCCCGGAGGGTCACCGTCACAGCTCTGACAAGTGTGTT--------ACGCTGACGTCCATGCCTATGGTTGTT-AATGGACCTGCGTC-CGTTCTTCAATTCAGGGGTGACAGTTTCATGCCTTGGTTTCATCAAAAAGCTCACTAGCTTTCTCCT

a score=60386
s chr3           149194601 2415 + 160039680 AATAATTATGAAGCAGTGGACTCCAGTAAAAGTATCCATGAATCTGTGGTTGTT---GCTTTTGTTTTGAAACATGAAAATATTAGAGGCACA-GGGACCTGTCACATTACAGTTTGATTCAAATGTTTTATGTGGAGTCAAG----TTGGCTGTGAGCTTCATAGCTCCTGATGCTGTGACCTGGCT-----TTACAGTGCCTCTGTTACTTCCCTGTGTCTCTGTCACCCTCTGGCACCATAAGGACATG-TCCAGATCTTGGTTGCCAGTGTCTACCTGG-------------ATCTTAAACATAATAAAGATACAGTAAATAGAGGCATATTTGTTTAAATGAGTGATAAACACTGCCGTAGAT-TTATTTAAGCTGTGGGTCTAACCACATTAGAATGTGGGTTTAAAAAAAAACTCCTTGCCCTCAAAGTAAAAATAACAGAAATAAAAACGAGGAGAACTAAATTGAACTGGTCTTTAATAGGGTTGTCAGAG-CCAATAAATTCCTCACCAATTACTCTATTATCTGATGCCTCGTTGCTCCTGTTAGCTGGTCTATTTGAAGTCAATGTTCATTTTGTTCTATAATTTTTCAATTTGTTTTTAAGTCTTTATGTCTTCAATTACCTTCCAATAGCTGTGTCTTACCTGCCATTTATTCTTTGTTGGATGACTTCTTAAAAGCAG---CTAACGGTGAGCTTCATCTATCATCAGACACCCTGAAAAGCTTGTTGAAGAATACAAGAAAAGGCAGTGAAGGACTGGGGGTGGGGCAGAGACGTGGTGGTTGAAAGAAGTTTAAATAGATAGGGTTTTGAGTTAGtttaacacatatttattgaatgctcaccctgggctggacactgtATACAAAATCTAGGGCACTCAAGATCAGCCAAAT-TATGACATATTCATGGGACAGAGAGAAACAAGAATCATCAAAACTCCACCCTCCCCCCAATTTAATTTAAACTCTAGAGTGACTTAGTGCTTCTAAGGTTATAATTTGATGTATACATTCTTTATCTTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTTTTCTATCTTGAACATTTTGCAAAGGTTCCTAGGATTGTGCAGT--------------CAGGACACACAGCATGGTTCTGCCATCCAGAATTAAATGTAATTTTAGTCACTTGGAACCAAGGTAATAACTGATCACA------AGTCAAGAAGG--TTTCCATGTTCGCTTGGTAAGCTATGGTCTCGAGAGGCACCCTGTTTTCTTTATTCCGTTATCATCATCGTTATCACTGATGTCATTATTTTGGTGCTCAGTATTAATTCCAGGGCTAGTGACTCCTAAGTACACGTCTCTCCACCAAGTCCCTGCCT------CAGCCCTGCTATTGTA--TTGTTGCCAATAAAGTTTTATTTTGACCACTTGTGAATCTTGT---CTTTCCTACAACCTATTACAGGTTTTGTGCCTGAGTGGCAGATTTG---------AGCAGA-ACTAAATTGTCTACATAACTGCAACTATTTATCT---GGCCATGTGCAAAACTCATATGCTGACTTCTTGTCTAGACAGCCCTTGGTAATTTGTGCTAAGGAGAATGATAAGTTAGGTGAGAACAAAATGATTGATAACCAGGGGAAATTTTTAATATCTCCTTCTGGATATGATTTTTGTCCTATATTTGAATACGATGTGAATATTATTCTGGGAATTTTTATCTAATAAAAGTAATATTCTCTGCTCTGAAGGGTATTAAAGATCCGAATCAGTAGAGTGAAGAAGGTCTATGGGACTTGGCGGCAGTGTTCCTTTGTTCCATACCTGAAAGCACAGACGTGAGAAACCAGCATGTCTAACTTTTCTAGTAATGAATTTTATGCTGGGAACATAGAGTTTGCTTAGAATGTAATATATTTCAGCTGTTATCCTATCTGGGGtccaaactggctcacatgagcctgacttcctgatgcctgtgaccttatacggttttatcctacatggaacatggctgac-tgtgtagccaataggtcataacaggaattacagtggtgagttttgaaggcagaaatgtcatccaaggaagtgtgccttctattgtgctttgaaggagccagctgctctgttgggggcgggggtgggggagcactca-gcagctctttggaaaggcctacccagcaaagacaat---gctttctgcccacaggttaggcatacctg-agccatccttcaatgtgctcacaacagtaccatcctggaagtcggttttgttttgtttttctttcttttgccccagtccaacacctgacatgctggtgtcaatctcctacgagactctgtgcag--ggac-ctctggtgaaatcactcctccgttccagccccacagaatct-ctgg--aatagtactgcagtgagcaaggttaatcattcacttttagaataagttattaatcagcagttgatTGCC
s HiC_scaffold_1 135851238 2313 + 233722169 aacaATAATAAAGCAATATACTCTAGAGATAGTAGTCCTGGTTTTGCTAGTGTTTTCACGTTTGTCCTGAAGAGTTGAAATAGC-GAGGTACTTGGGATCTGCAATGTTAAAGGTTAATAAGTATGTTTAACACTGCGTTAAGCAACTTGGTTATGAGCTGTATA----------CTTTGACATTGCTGAATTTTACA-TGCCTAT-TTACATTCCTGTATCTCATTCAGCCTCT--------AAGAGCAGGATCTATATTTTGATTTCCAATGTATATCTGAGAATTTGCTTAGTACTTGACACAatgtaaatattcaataaaaaagtaaatatttggaTAAGTGA---ATAAACACTGTGGTAGACATCTTTTAAGCTGCAGGTATAACTACATTAGAatattggtttaaaaaaataatgcttgGCCTCAGAGTTAAAATAACTGAAACGAAAAGGAGAGTGACTATATTGAACTGGTCTTTAATAGCTTTGTCAGAGGCCAATAAATTTCCCACCAATTACTCTATTGTCTAATGCTTCATTGCTCCTGTTAGCCGGTCTATTTGAAGTCaatgttcattctgttttataatttttcaatttgtttttaagtctttatatCTTCATTTGCCTTCCAATAGCTGTTTCTTACCTGCcatttagtttttgttggatgattttctaaaagcaaaatttaacatTGAACTTCAGACTTCCTGA-AGGTCCTGAATAGCttattgaaaaa-ataagaaaaggcagTGAAAGCCTAGAGGTGATG--AGCATGTAGTGAT---AAAGAGTTCAGAGAAAGAAGATTTTTAAtgcaatttgaaaatattttctgagttcctgttttGTGCTGGGCACAGTGTATAAACTCTAGAGAAATCAA-ATCAGCCAAAAATATGAGAATTTCATAGTACAGA----ATTAAGAACTATCAAAATCTGAGCCTCCCA--AATTTAGTTTA-----------GACTTGATACTCCTAGTGTAATGCTTTGATATGTAAATTatctattgt--------------------tctgtttttaccCAGGCTCACCTCAGCTGCCTTGACAATGCTGCCAACTTTCctaaaattatacattattttattataaccCAGAACAAATAACATAGCTCTGTcac-----atgaaatttaattttagttgccTGAAATTAAAGTCTTAATTG-TTGCAGTGTTCATCCAAATAGGAGTTTTGACTAAGGGTTAGTGCACTATG----CCAAATCCAGCCTGCTGA---TATTCCTGGGGCTTTTGGGTTG--------GTTTTCTTTTGGGTGCTAAGAGTGGAAATGAGTCTTTATACATCCTAAGCA--------TCCACTCTGCACTTGCATTACAACCAGCTCCA-TGTTACAAGTTtttgtcaataaagttttattt--acaaaGAGC-CATCCTGTTCACTTTTGTATTACCTATGGCGGCCGTGAAGCTCCAGCAGCAGAGTTGGGTAATTGCAGCAGAGATCGTCTCATCTGCAAAGCTACAGATATTTACTTTTCGGTCATTTATGGAAATAATGTGCTGACTCCCTGTCTAGACAACTTTTGGTAATTTCGGCTAA-----ATGGTAATTTGGGTGAGAACAAAATGACTGCTAACTA----AAAAATTTAATATCTCCCTTTGGATATGATTTTGTTCTTATATCTGAATATGGTACAAATATTATTTTGGGACTTTTTATCTAATAAAAGTAATATTCCCTACTCTGAAGGATATTAAAGATCTGAATCAGTAGCAGTTAGA--GTTCA-GTTACTTTTTGATGCTGTTTCTTTGTTCATTGTCTG------CAGACAGGAAAATCAGGGATGTTAAACTTTTCTTGTAAT-CTTGTTATGCTGGGAGCATGGCATTTGTCTCGGAAGC------TCGTAGGTAATCACTGATATTGATTCTAACATGGCCTGAAAGATCCCAATTTCCtatctcct-------------tctttctcttacaTGGAATAAGGCTGACTTGTGAAACACATAGGCTATTGCAGGAACCCTGGAGTCTAACTTCTGAGCTAG----GTCCTAAAAGATACTGTGATGTTTATTCTCCTCTCAAAGAACAAGCTACC-------------AGTTGGGAGGACGCTCATGCAGCTCTTTGGAA----CTGTGCAATGGAGAAAACTGAGCATTCTGTCAACAGTGGAGGAGCAGCAACAGGCACTCTGCCA---ACCAACACCTGCACGA----GGGAGCCGTGTTGGGCACA-----CACATTTGAGCCCCTG--------CTGGCCTTCAGGAGC---TCTCT-----GACTATCTGGAGCCAGACAAGCCAGCTAAGCCATTCCTCTGTTCTTAACCCACATGATCTACTGGTTAAAAACAATGCACTGTTC----TTAGCCATTAAGTTTTAGAATAACATGTTATGTATCAGTCAACAGCC

a score=34250
s chr3           149198373 1320 + 160039680 CTGTGACTTAGCTCTGAAGTACAGGTGCTGACCTGAAGCACAACTTACAAAATAAATGAAGCGGCGGATGTGATTTCTCATCTTATTTTGCTAAAGACTCAACCTTAGATATCTTCCTTTTCTTAGCAAAAAATAAAAAGATAAATTGGAAAATAACATGATACTTTGCAGATTGTTTGAGTTATCCAGCCTGCCTTTAATTCAAGGGATTACTGGACAAACCCCGAGTTCATTCAAAAAACACTTCTAAAATCTGCTCAGGATTACCAATATTGTCAGCAAAACCTGTTTCAAATTTATTGCTTTCATCCAGGTTAAATAATAAAAGGGTCCATTTCTCCCACCACGTGTACATACACAATTCCAGCTTTCATCGTTCCTTACACGATTAATCCAGTGATTTATGCTTTTAAAACTCATATTCGAGGATTCTGTTG-AGAAAGTCACCCAGACAGACAGAAGACCT-TGTGGGATTAATAGGATGTGTGCCAAGTTCAAAGCCAGTGGGGTTCTCCCTGAGCAAGGaaaaagaaaaaaaaaaaaaaaaaaaaaCAACCTAAACATGGTAACCCTTCTTTCAGGGTCTAATCATGTTAATGACTTTTGCAAAAGAGAACCGGCTGAGGTCGA-AGAGTTCAGAGAGGAGGGCCCAGACGTTAGACATAGACTGCATGGAAGAGAAGGCATTGCTACTGGAAGCTCTTCCTATTCAAAGTGCGGAAGAC------ACCGTTTTCTTGGAGGAAATCTGCCTTCAGTGT--GAGTCATTGTACT-AATGGCTAAATTTGAAGTTTCAG-AACTTTTGATTTTCTTTCTGAAGCTGTTATATTTCACTCAACTCCACCTCTAGCTGAGAAAAAGTGGGGAAAACGATCATGTGAGCTGATTTTAAAATACTCTTCAGTCCTCCAGGGCATTGCTTCAGTGTTGTCAGAGAGCGAGA----------TCCCAGACCAGGAACGAACACTCTGGTTAGC-TGTTATAGATGACTCTAAACACTTAAACATGTTTAGTTTACGCCTCACAGAGGTAAAGGACTGAGATATGGA-GTGAAAA----TGTTCTCTC----------AGCCC-----------CCAAGCCAGTTGTTTCAAGGATATGTGAGCCTTCACCTATAGCTA---CTTCCTTCC---------TTGTTTAAGGAATAAACATCTTCATAAG--------TTCCATTAAGCGCCT--------------ACAGATGACATCTTGCTGAGCACATTTTGCCACATCTCTGAACTCAATGGTTATCTCACAGGATTTCTGGCTCTCATTAGGTTACAGCATT---------GTTTAATACCTTGGCCGACTAA-TGGTTTGTGTTTGTTAAGTTT-------AAAGGGCTGTTTTAAATTTTAATTA
s HiC_scaffold_1 135854323 1377 + 233722169 CTAGAACATAGGTAAAAACTACACAACCTGGCCTCAGCCACACATTCTATTAAAAGTAAA-Tggcaaatgtaatttttaat-ttaagttgCTAAAATTTAAACC--ATATATGTtggttttaata----aatataaaaagttaaataacaaaataataagggTCTTTGCAGATTGTTTGAGTTATCTAACCCTTCTTTAATCCAagggattattgaacaaaaccgaTGTTCATTCAAAAA-CACTTACAAAGTCTGTTGTGGATTACCAATATCATCGGTTAAACCTGTTTCAAATTTATTGCTTTCATTCAGGTTAAATAATAAAAGGGTCCATTTGTCCCACCACATGTATATACATGAATTTAACTTTCATCATTCTCTACAAATTTAATCTAGTGATTGATGTTTTT-TAACGCGTATTCAGAGAATCTGTTGAAGAAACTCACCCAGCCAGACAGAAGAGCTAGGTGGTATTAATAGGATGTATGCAAGAGTTAAAGCTACTGGGTCCCAGTTTG------------GAGTCAgctggaaagagaaaaacaatttaaa-accccAACCCTCCTTG-AGGTTCTAATCATTTTAATGACCTTTGCAAAAGAGAGCAGGCTAAGGTCAAGAAAGTTCAGAGacaatgtttcttgtttctaaatTACACTATGTGGAATAAAA---CTTGCTTC----AGCTTTTCT--TTAAAAGTGGAAAAtactactgtattttttttctaaagaaaacctGTCCTCTACTTAAAagtcatcatattaaatggttgGATTCAAAgtgtaagtatcttatttgtttttttgtcaaaCTGTAATGTTTCACTTCACACCACAACCAAC--AGAAAAACTAGATAAAA--ATTGGGCAAGCTGACttctaaaaaaattgttttacacTAATATATTACTTTGAGGTC-TCAGCAAGTCCTATAAAAAATTCTCCTCTACcttga--tattattatttttaccttgTTATTGATGACTTTAAGTATTTAAACACATTCCATTTAAGCATTATAGGAGCAAAGTATTGGAATAAGGATGTGAAAAACCTTTTTTTCTCTATAGAGTGAAACTCGTCTTACTCTACCAGATATTCTGTTTCAATGGCATTCTAATCTTTACAAATGTTAAGATCTTCCTTTCATAATAGTGTTGTTC---GGACTAGTATTTTAACAAACACGCTCTTTCCTTTAACTTCTTTGCAAACCGACAGGACAAATGGAGACTTGCAGAGACTATTTTAGTGCTTCATTGAACTCAATGTGTAATGCTAACTA-TTCCaaccttcattttgttttaactttcatAATTTAACCCAACACTTTGGGCCACCAAGTGTTTTGTGTTCATTAACTTTTAAAGAGAAAGGGacattttctctatttatta

a score=15853
s chr3           149202900 743 + 160039680 AGCCTTGGTAGCCTAACTCCTCCC---CAAGATCTGTTCTGCAC----TGTCAATCACATCTCTTTTCCAAGGTACTTTGCTGAACACAAATCAAGTTTGAGGCACATCTCCTTCCAATCAATAGACCCTTATAGATTGCTTTAGTCTACCTAAATGACTTCCCAAGAAAATATCTTGCCATCTTGTTTCTAAAGGGAAAAACATCAGATTGAGAGTTCTGTCAGGTC-ATTGAATGGGACAGGTGACCGTGTTCCTCTGGGGCACTGGGGCACCTCAGTTTCGGGCAGTTCTTAGATGGTAAGGCACAGTATTTTCTCTCC-----AGTCAGACACACACACAACAGGGGGATGGGGACTGGAGTGGCTTTGAATTCAGGCAAATGGCTAAAGGAAGTTCAGGCTGCCAGAGCGTTCTGACACTCCACAAAGGCTGGTCTGCCTCAAA-----------ATTTCTGCTGTGTGGTCAAGAC--------------------AGGCCCATGCTAAAACACAGA---CCTGCCTTGAAGTCG------------ATCCTTAGCAAATCAACTGCAAATGTGGCTACTGATGGCCTCTTCAATAACAACCCAGCACATTTTTCATTCATACCATAGAGGCCTGTGCT----CAGTAAGAGAGCTGG--CGTCTGCTAAGCAGCCACTGCTCACATTTCTTCCTGTTCTGTAGCCGAGGGGAATTCTGGCAAAATTTGTGTTTATATTTTGCATGATGTTGCTAACTCAATATTGTCCACTGTGTCATCCGATTTGATCGTCACAATGGCA
s HiC_scaffold_1 135857347 758 + 233722169 AGCTGCAGAACCCTGACTGCTCCAGTGCCACATCAGGGCTGCACCAACTGGCAGTCACGTCACCTT-CCAAGGCACTTTGCTGCA------TCAAGTTCGAGTCAAATCTCCTTCTGATCAATAGATCCTTATACATTGTTTTAGTGAGCCTAAATCCCTTCCC-AGAAAACATCTTGCTATCTCATTTTTAATGGG-AAAACATCAGA-TATGATTTCCATCTGGGCGACTAAAGAAGAAAGGCTGATGTGCTCTTTGGGTCCATCAGGACTTTGAACTCT---GTAGTTCT---ATGATatgggaaaatgtttttttttcccccaagtcgAAGACATGCATAACA---GGATTGGGGCCGGTGTG-----GAATGAAGGAAA--GGCTAAAGGTAGTGCTCGCTGCCAGATGATTCCGACAGCACAGAAAG----------CTCACACATTCACTCTCACCTCCGCAGCGAGGACAAGGCCACAAGTGTTCAAATACAAGGGCCccatgggaggaaagaaaacctctgctttgtaatttttctattttttcttctttaccccATCAGCAGAAAATATGGCTTCTAATGGTTCTTTGAATCACAGTC-----CATTTGTCTTCTCTATTCCAAAGATATGTACTGCTGTACTAATGTGGTTAAATAGTAAGATAAGCAGCTGTTCTTCACAATCTATCCTGTTCTGTAGTGAAGGGATGTACAGAAAGAATTTGTACTTACATGCTTGACCTTGTGGTTAACAAAATAC---------TGTCATCTTGTTTAATCTTCACAGGGGCA

a score=13816
s chr3           149205333  902 + 160039680 GAGTGGTTCACTTCAAAACAATATGCAACTTACCCATTGACCTCACCT--ATTTTCCCTCACCTTTCATGAGCTGACTA--CTGTCTGCACTCAATGTTAGCCGTAGATCTGATGTTAGATAACTATGAAAACAGTATAGTCACTAAGATTATTGCTTTGGTGTTAGAAACATAGGAGCTGTCCCTAGATTTAACCATTTACAAGCTTCAGGGGA----GGGATTTAATTTCAGTTA--CTCGGTTTTCTGCTCTGTGATGGGATCTGCATACATTGGCATACCCCATAGGAGTTTGCTTGCTTTTTTGAGCTTTGATGCA----------------ATTGataaaataa-aaggaaataaaataaaaGGAAAAGCAA-----------ATCCTTAGGAAGTGTTTGCTATTATAACT-TGCTTATTGTGGTCTAATCAT---AGTTTTA--------------------ACCTATAAATAAGTGTTTATATAGGAAAAGGAAGTTTGGTGCCATCATTTTTGTATTATCCTGCTTTGAGACTTTGAGC-----TCAGACTTATCCATGGAGACTGGAGAAAGG------------TCAAAAGACCTGAATCCTATTTTTCTTCCCTGTTTTCAGTTTCTTTACTTGATGTTAAAACAAAGTTTTTAGCAAGAAAACCCAGTTGCCTTCTTATCTACTTTGTGGGTTTCTAAAATGTCTATGACATGATGCCATCACCATAGTCCATGTCATTATAAGAAGCCCAAACTAAG----------------------------TGTGTTTTCTCTAGTGC-----------TCGGGCTTCTCTCT-----------------------------------------------TTGATATCTCTTCTTTTTTTC----TTAGGTGACGC--------AAGGCAGGTTGGGAATTGGTCTCCAGTGCTGTTGTCTAGGTCCTTGAATCATCAAAGAGCTTGCATGAAAAGAAGAATAAGGGTG------------GGGGTGGTCAGAGG------GTGAGAGTGCTTCAGGAGG-----------AAACCTGAAGACATGATTTCAATTCCTG
s HiC_scaffold_1 135860808 1095 + 233722169 GGGTAGCTTGGTAAACAGCAATGTAGAACTAGCACAGTGACTTCAACagaattttttccctctttttatgAACACAATGTTCTAGCCACACCTCATTTTAGAAGAGGCTCTGATGTCAGTTAACTATGAAAACTGCATAGTGGCTGAAATCATTGCCTTAAGGTTAGAAATGTGTGGGCTGCATCAGGATTT-GCCATTCGGTAGCTCCAAGATACTAGGGAAATTAATCTTCCTGAGCCTCTATTTCCTCATGAGTATACTGAGCTATTTATGTTAGTCTA-CTcataagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttaatgaaaagataagaatgaagcaaaaaagaaggaaaaggtagCACTGAGGTGATACCTAGAAAGTGTTAGCTACTGCACGTATGTGTGTTGTGGTTTAACTGcataagttttatttaattattgttttttaatatatacaaatacatgtttGTATGGGGAA------TTTggtatttacatttttgtgtgaTTCTACTTTGACATGCTAAGCAGGATAGAGATTTGTTGGGAGAAACAGAGGAAATGTTAGCAGGACAATTAGGAGACTggaacttcattttctttttaggtaTTAATTTTCTC--ATTGAAACATAACCTGAGTGTTTAGCTGTAAAATTCTGTTGTATTC-TATCTATTTGATGAGTCACTAGAATCTGTATAAAACAATGCCATCTATATCATGCATGTTA-TATAATTAG-ACAAACAAAGCAATTCAATTATAGACCCTCCTTTCCTATGAGATTTCCCTAGTGAAAGTTATAAAGTCAGGTTTTGCTCTGATTATAAAGGaattagaaaaaatgtaaaagaattaaaaatataaactttttttttcctctttattccaGCGTTAGGCACTGCTTTCTAAGAAGAGAGTTTAATAATTAACCCCAAATGATATTGTCCTATTCCCTAAGTAACCAAAGAACTCTCATTAAAACAGAGATAATAATGGCTTGCACACCAGAAGTTGTCAAGGGCCAGCAATAAAAGTCATTTTagaggacctgcctggcaagtatgaggtcctgagtttgattcctg

a score=27109
s chr3           149211570 1126 + 160039680 AGCAGATATCAGTTCTTCATAGTAATTATGCCCGCCATGACTGGCATGAATCAGTTACCTACTTAGAAGAGGCTT--TTCCCCTCACCAAGATCAGAGTATACCTTTGCCATTAATTTTATATTAATTAGCACTTTCCCTCAAGAGATGTTAAAGTATGACTAGTTATTAATTTCATCCTTACAAATAATGAAAATGAAGTTGAAAGAAGAGAAGGGGGTGAGGCT-GAGTTCAAACTCAGGAATTTCTGACTCCAAAGCCCACCACCAGGGGAGGGAGTCTCTGTAAAGGAGATAGGAGAAAGGGGGAATCCTTATCACCCAACCCCCGCAGATGGACAGACAAACCAGAGGTGAATAT-ATCAAAGAGAGAGTCGGCAGA-----------------ACTTTGCGAA----GGTGGAGCCACTCAGTGATGGGGTCCCCCACAGCGACCCATGGCCAAAGCCA-GCGCCATTTCTGACCGTTTGGAAGCAAGTCCGAATACCTGCAGGCTGTAAAGTAATTTCTGATACAGGACTTTGTCCAGGAATGTGTTTCAAGGCTCATTCTATCTCTTTTCCTCTCTATCTGTACTTGCCTTTCAGCTTAGATGCCGTGCTTTTGAAAGGGTAATTTGAAGATAACAGGAGACATGAAACAGGAATAGCAAACATGCTTTCAAAGCCTAACCAGGTACCTGGT------AGCATTCCATTCCATTAATAAACTCATTTGAAAAGTGAGCAGACAC----------CTGCACCCCCCCCCCCCCAACAGAACAAATTTTAAGAGCTTCGGCCAAAGCCTACAAATAACTGTAGCAGAAAGACTTCAGGAAAGTAATGAAATCAAAAG-GCCTTTGCACCTCACTGTCTCTCAGGTAGCATCGAGCCTGACCTTGGAAGTATTCTCAGCAGACCATCTGGTGAGTC-ACTCAGCAAAGGCCTAAGTGGGAGCCGTTTTGGTCAAAGCCATTG-GGTTTCATAGAGTC-CTCCATTCCAGGGACCACTTATTTCTTTACTTGTCTGC----------AGCTAATCTGAGAAACAGTTTTGGGAGTGTGTTTCAACCAAGGCAC--TTACTTTCTTATAGCTGATG-----AAAAGAGTACGGTTGATTGTTAGttcttttcggttttgtacagagtcccatacctggtgctttct
s HiC_scaffold_1 135865854 1149 + 233722169 AGTCAATGTCAGTTCTGCATGGTA-TTATATCCATCCCAACTGACATTAATCAGTTACCTACTTAGAAGAGGTTTCCTCCACCTCACCGAGATTAGAGTATACCAT-GCCATTAATTCTATATTAATTAGCACTTACCCTCAAGAGATTTTAA-GTATGACTGGTTATTAATTTCatctttacaaataaagaaaagggaGTTCAGAGATTC--AGATGGCAAGACCAGGGTCTAGACTCGGGAATTTCTGAGCCTAAAGCCC-----CTGCACAGGCTGCCTCTCAGAATAGGTTGGGAGGACAAG----TCCCTCCCACCCTGCTG--GCAAATCGGTGGA-GAATTGGAGGTGGAGGTTGTGAAAGTGAGAGAAAGCGGACAACCAGAAAGCAGACAACTT---GAACTCGGGAAGAGCCTTGCCGAGTCAGATTCCAGCTTGCTGATACCTGCCTGGGACCAAGCGTAACACCTCATTGTTTGGCAACCTGTGCAAATACCTGAACTCTGAACCATGATTTCAAATGCATAACACAGTCCAAGAATTTGTTTGAAGGTTCATTGTATTGTTTCTCCTCTCCACCTGAACTGGCTTTAAGGCTTAGAGACAGTGCTTTTCAAAGGGCAGTCTGAAGAGATCAGTGAGTATGAAATAAGAATAACAAACACATATTAAAAG-TTAACCAGCTGCCAGGTACCATAAGCAGTTTATTATACTAATAGACTCGTTTAAGAAG---ACAgaatcagggttttttttttttttttttattcttgccaGAATAAATTTTAAGAGCTTAGGCAGAA--CTTGAAATGTCTGAAACTGATAATGT----GAAAG-AATGAATCTAAAGGAATCTTTGCATGTCAA-ACCTCCCATGTA----CACACACAGGCTTGAAGGTGCTGTCAACAAAACAGTGGGTAAGACTTTTCACCAaaggaaacagtgaaaa-cattcTTACAAAAGGTGTTGTTACTTCATATAATTGCTATGTTCAGATGGccatttattt-tttactcattcgTGTGTCCAAAAGACTAATTCgaaaaataaattctggaagGTATTATGACAAAGGAACTATGACATTTTCATAGATGATGAgactaaaattttaatgtttgtttctggttccttttcttcttttaaata--tcCATGTGTTATGCTGTTT

a score=175308
s chr3           149213438 7602 + 160039680 [encoded data, 8360 characters]
s HiC_scaffold_1 135867526 7757 + 233722169 [encoded data, 8360 characters]

a score=12850
s chr3           149221160 369 + 160039680 GGAAGGATAAAGAGTTGATACTAAGTTAGAAGCAAGAGTCCTGTGG--------------TAACACAGAACCATCAGGAAACTTCTTTCTGACAACTCTGATCTTGCTTTTTAAAACGCACTGGCTCCGGATTACTTCCCACAGAAAGTGTAATTGCATCAAAGGCCACCTACTAAAGAGCTTGGCCTCCAACCCAGGATTATTAGCTGCTGTCTCCCCGTGCATGCCCTTCCTCGTGGGGAAGATGGGCAA-GAACTAATAGGGAAGTTTAATAGCGGGATAGAATTGGCAGGGCTTGGTAACTTGGCTGAAAATTGTATTTCAGGTAGAGAAGAAGGAAGGACGAAATCAGAGAA----CAGCTGCAGATGGCGTTACGTTCTTTT
s HiC_scaffold_1 135876928 382 + 233722169 gAAGGGAAGTGGAGTTAGTGCACAATTAGAAACCAGAATCCCGCTGACCTGCAGGCCATGGGATACATCACTGTCAG-AGTTAGCATTCTCAGAATGGTGATCTCGCTTTTCAAAATGCACTGGCTCACTGGTGCTTCCCACAGAAAGTCTAATTGCATCAAAGGCCACCTCTGATAGGTGTTGGCCTCCTCTCTGGGATTATTGGCAATGGTCCCCCTATGAGCGCCCTTCCTAGTatggaaggagggaaaggaattAATAAGTAAGC----TACTGAAATACAGCTGGCAGAGCTTGGCAACttgataaaaaatta-atttcaggtAAAGGAACGGGAGTGATGAAATTAGAGAAAGAGAAGTCACAGAGAACaggaagctctttt

a score=16947
s chr3           149223856 1140 + 160039680 CTTTTCTTTCTGGACTGAAATAAGTTTATGAA-------AATCTCTAGAAAGCACAG--TTTCTGTCAGCCATCTGTGAGTTTGTCCCTTATTTAGACTCAAGTGTTTATAAAAGTGGGTGTCTGAAAAGGCCAGAGTTCAAGATTTCTGTGGGCTGGTGCAAGTAAGATCTCAGAATATACTAGCACGGTCTAAATTGAATGTTCTTTTAATCTTCCTACAACTTGTTACAATCTGGTACCAAGCCCACATCTGTGACCTGGCTTAAGGAGCGGAGGGATTCAGGGTATTTGGAAAAGACTGAAACCATTCTGTCGACACTGGTCTCATTGTAGCTACTAGCACAGGAAAATTAAGTTCTAAGTGTAATAGGGAACAGTAGCACTACAGCCTGAGAACTGTTCAACATAATTCTCTGCATAGTCAATTCAAGTCAATTCAAGAAACAA---------GGGCCTGGT----TTTAGAGGGTG------------------CAGAAG-AGCCTGGCAGACTACCAGTTCCGTTCCCCATTTTTCCTCAGCCTGTG---CTTACAGTCAGACTTGCAAGCACATGTACTTGCTGGTGTACTGCAGGGCACATTCAA-GTGTAATTGTAC-TTTAACTATTACAGTGTTTAGAGACAGTTG----------------------------------------CACTTGGAC-----------------------------------------TCCTTCCCACACAGTAAAAGTGGTGCCAGGCCGGTGATAGCCGGCCTAATTTTTTCTCCTGGAAACTCTTCAGTGCACTCTTTTCTTGCTG-AGATGAAA----------------------------------CTGAAGAAATAGGTTCTATGCATTTTACAC---TTTCTTGGATTCTTGACCGTCTTGCACATTCTGTCCTCTCTGGAAGGTTCTAGAATGTTCTCTCTGTTCTCACAATTTGCACAACCAGGCCATTCTTTTGTAAATGTGTCCA----GCCTTTTCAGGTTACCCTGCTTAA-------------------TCCA--GTTAAGATAGCTG--TAATTTTTCTCACATTGTTTATT-TAAGTTACAATAG--CAATATATGTCTTTATTTTCCATGAAGGAGCAGGCTATACCAATCTTCCTCATCATCCTGTCTCTGGGGGTCTAATCCAGTGTCCGGC----ATATGGTAAGTATTTGAAATATACTGACTT-AAAATAATTGTGACAAAGATA---------------------------CAATGTAAACATTTTTCATTCAGTTCTATGTTCCTGATG----TTATAAAATTGGAATTAATTCTT
s HiC_scaffold_1 135880020 1338 + 233722169 CCTTTTTATTTGAAATCAAATTGGTTTATGATTCATTATAATTTCTAGAAAGCAAAGAGTCTGTGTTTGCCATATGTG--TTTGACTCTTATTTAGACCAAAGTGTTCCCAAGAGTGGGTTTGTGACAAGGTCACAGTCTAAGCTTTCTGTAGGCAAGTGTGAGCAAGATCTTGGAATATTCTAGTGAAATCTAAACTGAGTGTTCTTTTAATGTGCTCAGCACCAGCTGCAATCTGGTACCTCACCCACATCCAAGACATGGACTAA-----------ATACAATGTGTGGAAAAGGAAGAGATACGAATTTG--GACGCTGATCATGTAGTGTGTACCAGCACAGGAAAATCAGGCTGTAAATATCATAAGCAACATTACTGATACAATACAAT-GCTGCGC-TCAGATTACTATGCATTCCCCTGTCAACCCAAAGAAATAAACGACCCTCGGATATGACTGATGGAGTTTCCTGGATGTGAGTTATTCTTTTCCCACAGATGTAAGTTCCCAGAATGTCAGGGACATAGTTCATCTTTACACTTcctgtgggctacacagtgagaactgACAACATGAACATCTATCGATTGTTTAGAGATAATATTGGGTATATGATTAGACTTTTAAGTGGCACTTTATCTGGGGACAGATGCTTTTCAGCTTACTGCTCTGTGACTTGTGTTTTCAGCAAACACTCTGACCATTTTCTCTCAATTATTGATCTgtctgttttctcttattttcctccaatcaaaccaaaaatgat--caattCAAAGTGGATTCAAGTGACCTCTTCTCTCTGAAATCCTCCAATATCTGCTCCCTTTTCTGCAAATCAAATCTGTTCAAAATTCTTGGCAGGGTCTATTAATACCTGCTGATGTGGCTCCTATTCAGTTTCCACCTTTTTTCTAGGTTCTTAGAATATTTGCGTGGGCTAGCCCCTCTG------CCCAGAAGGTTCTCTCTGTTCTCATGACATGTGAAACCTGCTCATTCTTCTCCAAAGGTTTCCATTTGGCTTTTTCTGATCACCTTACCTAAAGCTGGTCGCCTCTGTCAGTTCATTGTTTAGACATCTGTATAACTGCTTCCATAGTACTTGCTATGAATTGcagttattttctatttgtgtttAATCTCAATGAGGTAAAAGACAGTGCCAGTCTTGTTCAAGCTTCAGC--------ATCTAATTCAGCATCTGGCTGAATTACaagaaatgttcagcatatatttgtttaaaaagaattatgacGAAGATCGAATGgaagctctttttttctttcttttaatgcaAAGCTTTCTCATTAAATTCTATGTGCCTCACATACCTTGTAACAGGggaatgaattctt

a score=44127
s chr3           149226464 3779 + 160039680 atattatTATAAATGATTTCTTATAATC-CATTGCCTGTGGCAGATCATCAGCAACCACTGCCCTTAGACAGGTTGCAGCCTGGGATATTTTATTTGTAGCAAAAACATGGACAGGTGCGAGCCTTTCTCCACCCCTTTGTGCCTGCTAGTATGGCTGTGTCTTAAATATACTATGTACTATAATATACTATATATATTACAGA-ATCATTACAGAGGTTATACATACAAATTTCAGATTATGCCCTTTGAG-AGAGATGTGTGAGTTTTCCTA----------------------------------------Ggatggctggagctgcagcagctgtgttgggccaggaggcagaagcaacagttgaagttggcagagcagttagattgagggagcttatgtctacgatgctggaaagctgcc--acagcccaacactcagtatccaggccgttatatgtgggagaacatatttttatcttatttgagccactgt--ttgggtgtttgtcacagcagcctaacGGAGGTCCTTAGTAATATAAATGAGATAACCAAACTATAAATAAAGCCTAGCGTAGGTCTCAAAGTTTTTTTTTTCCCCTTGGATATCTAAACTTAAAACTGGTTTTAGTGGTAAGTGGGG-----------------------------------------GTGGGTGGGGGT-------------------------------AACCCTCAGC----ATGATA--------ATAAAATCAACAGCTTGAAATGGACATTTCATTT--TGTTTTCTGTCTCTCCCTGTAATCAAGAAAACAGACCTGGCATAAAAA---TGAAGGAG-GAGAAAATAGCAGATGCACATCCAGGGAGGGGAAGCACACTTCATTAGAAACAGAGATGCTGTGAGCT-TAATTCACAATTTTAAAAAGCACAGTATGTATGTGCTTCTGGCAGACGCACTATGCTTTTCTTCTAATTATATTCATATGTAAATATACATATATAAATATACATGCTCAT-CCAACTTTCCAAATATATACAATGGACATATTCCATAAATTTAAAAACAGTAACTTGAAAATAGAATTTTAAAAAACACAT-ACGGGATTTGAAATGGTTTATGTGTTTGACAAGCATTTC-CAAAAATAGAGATTTTTCTTTATGAATAAAAAGCATAGTGATA----TTTTGGGGGGCATTACCCTTAAACTGTACAGCATTCCTCAGCCTGATCAAAGGTATTGCCTCCCACTGTATCATGATATTCTGTTTACAGGAGAAAACAAGGAAAGGGCTGAGCCAGAGTGCCATGGAGCCTGTCTGTATGCTGGACCGTGTCTATCAGAGACACAGAGTgaggctggggagttggctcagggaacagagtgaacacctagtatacacagagccctaggttcgattcctagcacagcacaagtattctggtggtgcac-----gcctgtagcccagtgcacaggagatgg----------aggcaggaatatccgaaataccaggccatcctcagctttgtaagaagttccaggtcagcttagagtacctgag-aacatgcttcaaaaagtaa--------------------------aaCAAAAAATACAGTCAAAGCAACTACTATAGGCGGATAATTCAGCACAGCAAC-TGTTCACCGGGCTCATAGAAGCGCAG-------------------AATTTGCAAGGGAAGGAAGTCTCGTGCTCAGGATAAGAAG-AGACACTGCAGCTTCAGACCGTGTGAGAGGATGGCAGTGGAGCTGATC-CACCGTCCCCCTCCCTCTC-CAGAATCAATATATGGCAAAATTATCAGCACCAATCTCTGGTAAATAAATAG---AAGTCATTCTTGCTTCAAGGGATCAGAGTagccgggtggtggcgcgcgcctttaattccagcacttggaaggaagagacatggggatttctgagttggagggcagcctgtggtctacagagtgagttccagaacagccagggctacacagagaaaccttgtcttgaaaaaaaaaaaAGAAAAAGAAAGAAAGAAAAAAGATATCAGAGTAGAGAGATTGTGCACAT-------TTGATTTTTTTTC---AGCACATCTTCACTTTTCTATTCCCCCAATAAAAAAAAGAAAGTGAAACATTTTTATAAAATGAGCCAACGAGCCAATGGCAACGACTGAGGCTAAGGGCTGCACTAAAGTATCATTGAGGGAACTACCCACAACACACACAAATATATTTGTGTGTGTATGATCAAGAGGACTACCTGCAAAGATATGTGTGTTATATATTCATGTATCTATGTGACACATACAGTTTACATGCT-ATTCAAATCTGTAGTCTAGAAAGAGATAGCACTAATACTTGAAAGTAATAAC-------ACTGAGACTCCGCTTCACTTCAAAAGAAGTGCTGATGG----TTTCTGGCTGCAATGATACTCAGGA----AGTGTGGCAGTCAGGGCTGGAAGGT----ATGTGCGCCATGTCTCTCTCTGAAGGTGTGTGCACCAGGTCTCTCTC--TGAAGGTATGTGTGCCATGTCTCTCTCTGAAGGTATG----TGCACCAGGTCTCTCTCTGAAGGTATGTGCACCAGGTCTCTGATGGCATGCTTC-TGTGCTGAAATGGTCAGCCTTTTCAGGGAATTTCATATTCTGTTTC-CTGGTTTGCAGTTAGGTTATGAACATGCTTTGCAGCGA-TGTGCTGAATCCCATGCTCTTTGCAGCACTGGGAATTCTATTTCAGCTACATAGC-ATTTCTCATCCTGGAGAACTTAGAAGTAAACACAGCATG---TCATCTGTCAGTATCCTGGTGTGCATTTGCACGC---TTTTGGAAACACAACCTTATGAAGCTCCATAGT-ATGTGCACCAGTCCACTGACTGTTGCCCAAGAC-CTCTGCTCTTGCTTTCTCCTTCAGTGTTTCTTTCCCTACTTGTTTCTATACTTTATGATTCAACTACTTTTATTAAAGtttattttatttcaggaatcatatattttatgtttatgagtacactcgggctatcttcagacacaccagaagagggcatcggatcccattacagatggttgtgagccaccatgtggttgctgggaatagaaatcaggacctctggaagagcagtcagtgctcttacctgctgagccCCTAGAATGA--CGTTTTTAGTCTGTAATAAATCTTTTGCACTTAGAGAAAA--CATCGGAAGTGAAAAAGAGAACACATACCTACAGACATGCAGGACAAGGAAAGAGGGGGAGGAGAGGAGAGAAGTGTGTgagagagagagaggcaaagagacagagagagatagacagagagacagacagaaagagagagagagacagagagagaccaaAAAGATACCATACCATCTCTATAGAGCAACAACTCAAAGATGGAGGCACTCAGTT--TGAGTGGTTACCAACTGAATTTTCATTTTAAAAAGACTGAATAACCAAAGAAATATTTAA------TTAAAAACCCACTC--------CCTTTGTGGCTTCTGTCTGGTCCTGTCAAAGAAACCTGGACAATCGCTGGGAAAGCCACACCCTTCAGCACGTCTTGGAACCGAGTGTC--AGTCCTCAGAATTATGCCTTTTCTTCAGTGTACACACTCAGGG--AACTCGAAGGCAA------AACAACAGCTCAACAGCAGCTATTTTAAGCCTTGTAAAACCCACCCAGAGATGC---AGAATGACTGAACCCACAAACCTC-ATTGTAGCGTGAAAACAGG------------------GGGGAGGTCCTTAGATGCATACTCTTGTCATTGAATAAAACTTGACAACACTCAGCCAGTATTCAAATTAATAAAG--TCTTTAAGAAGAACTTGCACTTGATTGGCTAATCTTTGAAAACACTTTACATAATGGTGGCCTCACTTAACTCTTGCCAATTCCCGAATATTCTCAGATGTAATCTAAGCAAAGTGTCGCTAATGTGGGGTATGATTCTGAGAACCATAGATT
s HiC_scaffold_1 135883119 3335 + 233722169 ACATCCTTTTAAAACATCACCTATAATAATGCTGCCTGTAATGAGTCATCAGCA-TAATATCTTTTGTAGAAGCTGCAGTTATAACTATTTTATTGTTAGAGAGTCTCTGAATAGGTATAAGCATCTTTCTAA---Tttatgttgtttgttttgcttttgtcttttgt---tttggtattgttGTGT-CTGAATATCTGACATACATCATTTCAGAAGTTACATGTGGGAATTTCAGACTCTGTCCTCAAAGGAGAGAAGCACGCATTtctttatgccttttttttttgctttcttgctAGCTGAAAGCAAACAGGATGGCTGGAGCTGGGGCAGCCATGTTGGGTCAGGAGACAGCTGCTCCCTCTGAAGACGGCCACGCAAGTAAA---AAGGA----------------CTGTGCAGCTGCTCTACACCCACAAACTTCCTGCGCAAACTGTTAG--GTGAGGGAATGCATTTCGATATTCTTCAAGCCACTGCACTTTGGAGCTTGTCAGAGCAGTATAACT-AGATTTT-----ACAtggaaaataagaacaaaatataaataaaatctggtatatgtat-------------ttttaattaaatatctaaGAGTAAAA-GAATTTCAgtgataagtgaaaaaaaaatattgtctttttttttggtaccggggatcaaacttgtgactgtgtgtttgcaaggcaggcacttatgccactgagctgaatccccagctcctaaaatATTGTCTTTATAAAAGGAACAATTTGAAAATGACATTTCATTTAGGGGTTTCTGTCTTTTTCTATAACCCAGAAGATAGAATCAGCATaaaaaaactgaggaaaagaaaaaatagcaga---------------atgAAATCCTCTTCATTAGAAATGGTGCTACTGAGAGTGGTAATTCAGGGATCTAAAG-GCACAG-ATGCTTGCGTTTCTGGCAAAAGCACCAcgctttt-ttccaattttatacatatgtaaatacacatatataaatatacatattcatGCCAACTTTCCAAATATGTACAATGGACATATTCCATAgatttaaaaacagtaatttgaaaatagaat----aaaaacatgtCAAGggatttgaaatgttttatgtgtttaacaagtatttctcaaaaataaaggcGTT-CTTTGTATTTGAAATGCACAGTGATGGTTTTTTTTGGGATAATTGCCCTTAATTTATATAGTATT----AGCCTACTGGGAAGCTTAGATTTTCA---TATTATGACACTT-----------------AAGTAA--------------------------------TTGTGCTG---------------------------------------TGACTTAAAGAACA-----AACACCTC-TATGTGGTGAGC----AGTTTGGTGCCACACACAGTA-------------GGTGCCCATGAAGCATTTAACGCCATGCATGTGGGACGGTTGTGTCCCTAGGGAGGGTCATCGTATTCACT---------TCCATTTTATCAATAGGGC-AGATCAA-TTAAAATATCTGAGCAAAAGGCTTCAAAGGGTACTATCTGTAAATGTGATGGTGTcctttaacaaaaga--------aaacaaccacca---------aaTGAACAACAGCAACATAAAAATTAGGGTCTTAGAAATCCAGCAAATGAGTGTCTAAGAGCAACTTGTGAAGCCAGAGAG----------GGCGTTAGAAGTGGAGGCTGCTGTCCC----CATTTCAGTGCTTTGC--TCTAGCTGAGCACGCGGCCTCCCTCCTTAGAGAAAAATCAATGTGCAATGAAATTATCTGTGCTCCTCTCTGGCTAATAAATAGCAGAAATCTTTCTCGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGATATCAATATGAAATGATTGTTCACATGAAaaatttggtttgttttccaCAATAGCTTTTCCATTCTCCATTTCGCCAGtgttaaaaa--aagtaaagcacTTCCCTAAAGTGTACAAA-GAGCAAAT----------------AAAGTGtgca--aatgcaaatttaaaaaaatcat-----------------------------------ttaagagGAAATGTTGCccaaatgtgtgtgtg-------cacattacTCAGAAACAACAAATGTTTGCATGTTTAGTCAAATCtgcaatttaaaaaggaa-----------attggaaGTAATTACTAATGTAAGGGGGAT---------------GAGTAGTGCAAATAGCAATTTTCAGGTGGTGCCTATATTTAGTAGCTAAGCGTAGCTCTC------TCAAGGTGCACATCTGAGACTCACAAGCTTCTATATGTGCAcacactgaatctgtataaataCAACTCTGCTCACAATGTTTGTGTGTGCAGCTAGGAAATCTTACAAATTCTGTCT---GGCGTACACTTAGACTGCCCATGATGATATTTTTTGCATGTGGCAATGGTAGGCTTTTTCCGGGTGTTTTATACGCTGTCTCTCTAATTTGTATTTACATTTCAAACTTACTTTGCAGGAACTGTATCTGATTCCGTGTTCTTTGCACCATCGGGCATACCACTTGTACTAAATAACTGTTTATTATCATTGAGTGCCTTAATGTAAACACTACACAACTTCATCTGCCAAAGTCCTGCTATGCATTTATATGCAGCTTTTAAAAACCCA--------------CAAAGTCAAGTAAATCACTTAATCA--TGGTGCTCTGAACACTTTGGGTGGACTG-----------GCTGCTCTCATTGCTTATTTTCACAC-----Ggttca----cttttctttccctttcccctctttC------------CTTTACTTCTAGA------------------TCAAACA-------------------------------------------------------GCTGTTAATCAAAAT--------------------TCAGTATTT------------CTCCAAAGATGAGAAGTATTCAGTATCTGATAAATCTTTAGCATTCAGAGAAAAGGCTTCGAGAA-AAAAAAGGCAGGACACACatacactcat--------------------------------------------------------------acacacacagacacacagatgcacacacaccaTG-------------------GAATAAAGAGGGGTCACACCACC---GAAGAGCAACACTCTAAAGATAGAGGTGTTCAACTATGGAATGGTTAACAAcagaaatttaatttgaaaaagatTGGAAAACCaaagagatatttaaaattttttcaaatcacTCTTAACATCTTCCTTTGTTGcttcttttcagttctttcaaAGAAACTTG-ACAGCC-CTGGGAAAACAAAACCCTTCAACATTTCTTGAAGCTTAGCGTCTCCGTTCTCAGAAAT-----CTTTCTGCATTGTACACACTTAAAGCAGACTTGGAGGAAAGTAGCAAACAACAGCTTAGTAGCAGCTATTTCAAGTCATCTAAGATTCACCCGAAGATGCCAAAGAAGCTTAGAACCAGTGAGCCCCTATTGTGG-ATGAAAAAAGGGTTGGTTGGGGGGAGCCAGGGAAAGCACTTAAATGTGTGCTCTTGTcattgaaataaaaatcacaatattcAGCCAGCATTTGAATTAataaagaatctttaaaaataacttgcATTGGATTCTGTAACCTTTGAAAACATCCTGAAGAATGCTTGCATTATTCTGTCCTTCCCATCCGCTGCATATTCTCCGGTATGAACCGTGCAAAA-ACCTCTCAGACAGAATGTGATTGTTAGAATCATAGATT

a score=25355
s chr3           149232674 1543 + 160039680 ttaatttCAGCTTTTCGGTGGTTGGGAAAGCATAc-tatagaatgattct-cctttaacctccagttcagtatccaaagaccagcatgaggcagtctgtactca-------aactggcctttatacttacttgcttttcctcaactggaagctggtggaaatgttcggaccacgtcagagatgggctgtgctaactgtgaccttcaggagACTGTTTGTTGTGCCTTGTCT-TAAGATCTAGTGCATCCTAGACTAAAAAGAAGCATTTGAGAAATACCTAATTGAATCCAA-GTCCACTGGACA-CCATTGGCAACACCCAAACGACAACACT-TCTCAGAAAA--ACACAAGAGCCTTCTGAAGTGGGTTGTATCCTTTCTTCCTGCTACAGCTCATTATTGGCCCTAGTTTTAGTCTCTCCTCTGGGCCCTTCACCTCCGTCTTTTATACTAGAACACTTGGAGTTCTTGGTCAGCCTTTCTTCCAGATCTGCTCCAGCTGGCTTTCCTACCTTCACCTCAGCACTAACACAGCCCAGAGCTCACCGCCTCTATCCCCTTCCCACACTTCCTCACCACACTCAAGCTGTTCGTGCATCTGTCCTTGAATCCTTTCCTCCCA------CCAGCTCCAGGTTAACTCCCCC--------------------AAACAGCATTTCCTCCAAGCCTCTCTCTCAGCCTCTGCTTGTTCACTTACCTAAGAAAGCCCACAGCCCTCAGTCCAGTTTTTAAGGCTCTACATAAATCTCTTCCCACCTTTCCTAGAAACATTTAGATTTAATGCTTGGCTCTGTGCGCTCTCAGCTCTAGTCTGGAAAACTCACTCA-CAGTCCTCTTCTAGCCCATTTCTTAGGTTCTCTCCAGAGTTTGGCTTCTGCTGTGTT-CCCATTGTCAGTACATCGTTCTAT-TTTTTCCATCGGTACAAATCCTGCCCGTCCTTCCAGATAGAGTTAGAAGCCCATTTTATTCACGGGATTTTCCTTCTGTATCAGCCAACAATGACAGACTTGTTCACTTAAATCCTGTCacagatgtttattgagtgcttactatagaccaggcaatatggtaggtgtt-agATTACCAGGAAGAATGGGGGTCAA-CTCTATTCTGAAGACTCTCAGCTCCCCACTTCCTAACTGCTGTAGTATTTACAAGATGACTCATTTTGGCTCTAGTTACATATTTCTGATTGCACCACCCCCCCCCCCCCGCCCCGTCTtcttaatcttttcagatggctctaaaaatatcttccagtgagtgatt----tatacataatggaagtttgtttctcatcgtgcaggaggcggagaagcccaaggtcaaggtgcctgcagattcaatgtttggcaagagttccttttctgtttcccagaaggcgtc---------------tccctgctttgttcataca----------gaacacacacctcccttc----ccttctcaaaggcaccaggccttttcacgcggacccgcatcccaattgatctagtcattccccgaaagtcttacctcttaatat--tgccacacagcaggagtttcaacatatggattttgaaaggac------aaacatttgaacA
s HiC_scaffold_1 135891158 1489 + 233722169 TTGACTTCACCTT-------GGTGTGAAAACACACCTCCAAAAACTTTCTGTTTTTCACGTTTAGCACAGTGTTCAAAGATTA-CACGTGATATTCAACACTTACAAAAATAACAAGCCTTCAT-TTGAGATGCTTTTGTCCAACCGTAGCTGACTGTATGTATACTGAGCGCATTTGAGGTAGACGAGGCTAAGTATAACGTTTGCCAGGCTGAATGCTCTGTGTTTTCCGTAACACCCAGTTCA-CATACAC----AAAAAGTCTTCAATAAATACCCCGTTGCACTCAATATCTATCGGACAGTTCCTGGCAACAC----ATAACATAATTATCTCGGGCAGTGCTACAGGGCTTGTCTGAG------CACACTGTTTATTGTCCCTACCGTCCATTACCAGTCCCTCCTCTACCCTGTTTTCCTGGCCTCAGGCCCTCCTGCTTCGTGTGCAAACTCGCCAAAGGCT----------------CAGGATTATTCCAGACTCCTCCCCAACCTGTCCCTC-------------CTGGGTGTGCGCCGCC------CGCCCTCCGCCCGCCCTC--------CAAGGTGCTGTGACAGCTGCTCTGCTGTGCTGCGGAGCCAGAGGGCACAGCTTCAGCTCCGCCTCCCCCACTGCCAGGAGAGGCCCTGGAACAGCATTTTTC---ATCCTGTCTTCCTGCA-CTGCTCATTGACTTACCTAATAAAGTCCACACTCCTCAGCCCAGTCTTTAAGGCTCTTCATAAATCTCTTGTCACCTTTCCTGGCAACatgtaaattttacttttggCTCCGTGTA--CTCAGGCCTAGTCTGGAAATCAGATTCGTTTGTCCTCTTGGAACAGTCTTCTAGTTTCCTCTCCCGTGTTTGGCTTCTGCCCTTTTGCTCAC--TTAGGATAGCCTTCCTTACTCCCCCATCAGTGAAAACCCTGCCCATCCTTCAAgacaaa-----------attct---------attttctttctacaACAGGCAGCAATGACCTCCGCGTTCTCTTAAATCTGGCAATGGAtgtttattgagtgcttactaCATTCTAGGCAGTGTGCCAGGGCTTCGGGTCACCGACATGAACAAAGGACAGTTTCTATTCTGAAGCGTCGCAGTTGCCCCTTTTCTAATTCCCATCACACTT---GGAGCAATCATTTTGCCACCACTTGTGCACTGCTG--TGCTTCTCCTGCTCTCTTCCA-----------TGATTCATTTGTGtagctataaaattattttatgctgCATAATTCATATATAAATAATGGAAATGTATTCCTCAAAGTTCTGGGGGCTGAGATGGCCAAGGTTGAG------GCAGAGTCAGTG-TTGGTAAgggttctctctctgcttccaagatgccgtcttgttcttttttttttttttgctttgtcctCACATGGGAGAAAGGAAAATTCAGTTCCCTGCAGCTTCTTTTATAGGGTACTACCCTCATTCATGAGGA----------------------CATTTCTTAAATGACTGACTTCTCAGTGTGATAGCATTTGGCATT-GTTTcaatatttgaattttaggaGGGCAGTGGAAAACATTTTGATA

a score=24779
s chr3           149235842 753 + 160039680 GTATTAGCTTAGCCCTTGGGCAAACTTATGCTAGAATTTTAAACAACAAACAGACAAAAAAAAATCGGATTTAATTTTCTTGTTCCCAAATATGGAAAGTTTATACATTTGAAATAAACTTTCCTTTGGGTATCACTGACATAGGTAATAGCAAGGTAGAGATATTTACATAAGTAGAAAGTATGTTTAAAGCAGAAAAAAATGTAAGCACTGTTTTTCAAACAGTATCGCCCCTCTGAAACAGAGAAAAACCTCAATAGAAGGAACTCCTAATTGGGCCTTATAAAAATTTAAACAGAAAGTCATGTTAAACATTAACTATCTTTTTTTTTCCCCTTCCACTCAAGGTAAAAAAGTTTTGAAGACCTATAATGACATTG---------TTTCTTCTTATTGACTTACAAAGGT--GCTTTCCTTCCTGGC----TACCTGTTTATAAGCAGTTTGTTAATTATCAAGCTGTAACCCTGAGATGAATTTGTCATGGAAATCACCAGTGGAAGCACCGAGGAAGGAAACGGTGTGCAGACCACTGCAAGGGAGCAGCGTAGCCAACGTGAGCTTT-----------GCAGTCATTATCAGTATCATTTCTGGACCATCCTGGCTAGACGGCAACTCCCACAGGTCCAGACGGTATTCCTCACATCTATGTGTTATAACGTTGCTTTTAATTATTTATAAAACAAGCAAACATTAAGAGAGAAAAGACTCCGTGATACAAGACAGCGAAATGAGTTTGAAAATCTACTTGGTTTTCTTTCT
s HiC_scaffold_1 135893171 726 + 233722169 GTGTTACCTTGGCCCTTGGGCAAACTTgtacaagaattttaaa-aacaaacagacaaaaata--cctgacttaATTTTCA-GTTCTCAGGTAGCGGAAGTTTATGTATTTGCAATAAGGTTTCCTTTGGGCATTATTGATATAGGTAATGGCAAGGTAGGCATATTTACATATATAGGAAAGATTTGTAAAGCA------------------------------------------TGAGAAATACAAAACCCTCCATAGAACAGAGTTCTAATTGGGCCTTATAAAAGTTT-AACAtacagtgatgttaaacattatgtatattttcttt-----ctatattcagagtaatttttctttcaagaagCATAATGCCATTTGGCTTTTTCCTTCttcatacttattttaaaaggttaaCTTTATTTTATAGCCATATATCTGCTTATAAGTAGTTTGCTACTTATAAAGCCGCAGTATTTAGATGAATTTGTGAATGAATTTCATGAAGGGGTAAGCATGTAAGGAAAATGTCACCAATTAGTAGCAATAGTGTGAAATAGCCAGccagcgttttttttttttaccactaccataacttgtatcctttctgCACCATTTTTGCCTGACACTAACTCCCATAGGTTCAAAAGTTATTCTGCATGGCTATGTGTTGCAAAGTTGCTTTCAATTATtaataaaacaagcaaatattCAATGAGATGC-ATGATGTGATACAATGATACTAAAGAAGCTTGCAAATCTGCTTGATTTTAGTTCT

a score=29070
s chr3           149238347 2071 + 160039680 CCTTGTGAACAGACTCCTTCATTAAAGTCAACCAGCAACTGCCTCCCACTCTTCTCTTGTCTGCAGGAACTGCACACCATTCCACCATTGCTCAGGGCTGAGTCTATTCAATC-----------------TGTGACGCTCATCAGGGTATCAATGACAGTGTCTTCTCAACTCTGCCCACAGCAGAGAGCAGTTGCTACACAC--GGGAAGGGCTACTAAATCACACTGTGT--TTTGTACACTCAGCCAAAAGAAAAGAAGGATTTAATTCCGGCCCATCATCCTTTCCCATGTCTGAGCAGCCTGACACCGTCCTCAATCACATAACTAATGTGCGGGAAGAATGAAAACTCT--GAAAAACCGGTGACCCAGAAAGCTGAAAACCAAAAATTATGAAGCATCAAATGATACGCTATTTGTCATTTTTCTCTGACATAAA-----------ATAGATTCTGCTCAAGTGTCCATGTCTAAAAAAA-----------------TGTTCTAATATTGAATGTTTTATATTA-------------------------------------------TTTTAACACAAA------------------------------------------------------------------------------TGCATGTAC-------------AAAGCATTCATTTTATTTAAACTATTTATTTA------AAGCC-------CAAAACAAGGAAAGGGAGCAAATCTGTGAGTCAGTCTATTTTTTAAATCAAACACAACTTTTCCCTTGAAATGCTGGAATCATAATTTGACCTGTATATGCCACATATGTAACTTC-ATCCCGTAT-------TTAAACATTTCAC---TCGATTTTAATTGTGAGTAGCTTTAGAATCCAGGACTGAAAGAAAGGTGGCATCAGTTTCTCACATCCTGATGAGAGCTAATTAGCTAATTAATTGGAGGACAGTTGAATGCTAGGGTGGAGAGGTGCGGAACACACTCATGGCAGGTACCCGGAAGCGAGCAGCTTTGGGCTTCCAGGATAGGAAGGTATTCAGTAGGTGC------------CTCCTTGATGGTTCTTGTGGCTCTGTTCCCTACTGATTGAAATGCTGATT----CTTAGCAGAG---TCCTGAGCTCCTGCAGACCATTTCTCTTGTTCTCTTGAAGATGGTCACCACAGCTGAGGCTGTTTCTAGGAAGCAGGATGGGAAAAGTTCTGG-CTCCATCT---AAGTG------CATTGTTTGCTACGGAGAACGTTTGTATTGCTTAGGAATTAAGC--AGCCATGAGAGACTCAA------CCTCCATCGCAGCCTGAGTGAAATTTACACACAATTC---------TCTCAGGAAT------GAAAGCAACCTGGCAGTGCAGCACATTGCA---TGAAACCCTTATAAAACCCAAACTTTCAG------GTCCTTCAGCCCAGGAGCACACCCTTGTCACTGGGACCAGTACAGCTGCAGGAGCGCCAGCATTTGTATGTGC-GCATCAGGAAACAGAAAACAAAAGGAAAGGGAATGTCACAAGCCAATACCACAGAGTCAAGG-GCACTACAAGACTTGCTCATTGCAAGGGGGCGGAACCCACTGCGGCCAGGTAGGGGGCCACTCTCTGCTCACCTAAGACTGGTGACAATTCTTAAAGAAAATCTTGGGTCTTTGTCCAA-ATCCCAGCAAGAATGACAGAAGAGTGAGT---CACTGATTATATGTGTTGTAATAGTCATTGAACCTTGGCTTTGTGGAATTTTCCGTGAAATGGGGTCATGGTAATGCCCAGTTCTTAGGAAATCAA--GAAGTGTTATCTGAAGAAA-CTTGTAAGCTATGCCACCCCTGCTGGGTGCCAGGGA-----TCAATTAGGAAACTTCTTTCTCCA-TAAGCTGGTGTGTTAACAGTTGACTGAACTGATCCAAGACCACTAATATCTACACTATTTGTTGCATGGGGCTCTACTATTTATAAAGGTAAAATCAGTAC-CTTTCTCTATACAATTTTTTTCTACCTTCACTGCTT-TGGACTCATGGGTAAACACTTGGAGCATAATTAATGA-TCATCCACTATTAATGGAGTAAGCTGTGATCTTCCTGGGCTGGTACAGGCACCACAGATACATCTGGAAGTCAAGTACGTGGT-CATGTGCACGGGCAAGCCTGTGGGGCTGCCT-CCGAGCTGTTTAGGATTGGGGACTTGTGAGCATCTGCAGGCAAGATCCAGCTGCACTGTACTCTTTATCACCGGGACCAATAAGTTCTGTTCGTA-------------CAAATAGAAATCAATGTGG
s HiC_scaffold_1 135896958 2198 + 233722169 CCATCTCAGTGGACTCTGTAAGTGTAATCAACCAGCAATT-----CTTTTCCTCCTGGGTC-----------CCAACCATTCCAACAGTTGTTAGCAATGAGTTTATTAAGTCAGCACACCTTCTAAAAGTATGTATCCCACCTGGATGCCAATGACAGTATCTACTCGACACT--------CAATGA--AGTTAATACATACAGGGGAAGGACTCCTAAATCATACTGTGTGTTTTGTATATTCaatcaaatgaaaa--agaatttcattTCTCCACATCATCTTTCCCCACGTCATGGGAGCCAGACACCTTCCTCAATCACCTAGCTAATGTGCGGAAAGAACAAAAATTCTTTGAGAAATCAGTGACCCAGAAAGTTAAAACCCAAAAATTATGAAGCATCAAATGACATGCTATTTGTCATTTCTCTTCTATATAAAACCCACCACTTATAGGTTCTG-TTGAGTGGTTATATGTAAAAGCGTCCTGTAACTGGGTGGTTGATGTGATTTTATATGGTTGATATtaatgatggtgaacctttaaGAGACTCAGggcccaaaacccacttatttaccgCAAAGTGCCAGCACTGCAATTGAACCTGAAAGCTCTGCTGCTGGGGTGATTTGGGCTCACGTGCtgtaggttcaccatcactggcatATACATCATTACATATAAGATAATTTATTCTATAATTATGATTTGCTTATTAAAGAAGCCTTAAAAGCAGAACAAAGTAGAAGAG--AGTCTGCGATTCACTAATGTTCTGGAGTCAAGTACAATCAGTCTTTTGACTCTTTGAAATCATAATTT------TACATAttagctttaaaattttaatcctgTATAATTTGCTAAAACATGTTCCTAATCTCTTTTAGTTGGGAATAATTTTTCAATGAAGTATAGAAAATGATAT---AACAGATTTTCACACCGTTGTATAATCTAATTAGCTGC----------GACAG----ACGGTAGGGTACAG----------------------------CAGCAAGCGCCCAGCTTTGG-------AGTCAGATACGGATTCGTTAGCTGCAGCTGCGTCTTTCTCTTCTACAGTCTTC---ACTTTTCTTCCTCCTGATCAAACTGCTGCTTATACCTGAGAACAAGTCTTCTTAGCACGAATATGGTGTTTGCTTTCCTTTATTGGACTTAGTAGCTCTTGCCAATGTGATGTC-----AGTGGAATGTGAAACTTCCCAGCCTTTATCTTAAAAATGGTCATCTATTAGTTGATCCCAAAAGCAATTATATTAGTTAGG-ATTAAACAGAGCAGTGTGTGACTCAGAACCACTCCCTCTCCCAAATTAATTGAGATTTAAGTACATTTCAAAGTTGCTCCTGTGGAATCCCACAGTAGGCAGTCTAG----GGAAAACAAGGCGATTCGCAGTCTTCAGAGACCACGTTTTCGCAGGTTTCCGTTTCCCCGCTCAGGCACAAAT-----------------GTGTGGCTGCATGAGCTCCAGCATTTGTGTGTGCAGTGCCTACCAACAG-------------AGAGAATGCTGTAAGCCAGTGCTACACAGCCAAAGTTCATCCCCAGCC--------TGCGAGGAGATAGAGACTGCATTTATCAGGT--TAAGCTATTCTGAGCTCACCAGGGACTGTTGGC-CTTCCCAAAGAAAATCAGGGCTCTGTTTGTAATACAAAAGCAAGAACAGATGAGAGATGAGTTTCCATGGCCTGCGTCTGCCGCATTGG-CAGAGAATCTTGGTTTTGTGGCACTATTTGTGTAAT------ATGGTGACA-------CTTAGGGAATCAAATGAGATGCCATTTGAAAAGCTCTGGTGACATGTGTAGCTCTTGTGGGGCACATGAGATGTAGTTTACTGTGACAGCCATTACTTCACTGAATCAATATGTCATAATTTATCACATTTGATCCTATGCCAAGAATATTTAGATTATTTGCTGTTTGGTG-GCCATTGTATATAACTGTAAAGTTAGTACTCTTCCTCTACAATGTTTTTTGCTA-TTTCACTGCTTCTGAACT--TGGGTATAC-TTACAAGTATAATTATTGAGTCATTCGATATTAATAGAATAAATTGTGATCCCTCTGGGACAGTCTAAAAATTTCACATAAATCAGGGATTCAGATTCTCCTTACACATTCACAGGCAAGTATATAGGGGTGTATATAAAGGTTTTGAGATTTGGGGAGTCATGAATAC-----------ACCCAAACTCACTCGATTCTGAAACAC---ATTCATTTTGTCATGTTTCTAAAATGTTGCTATTTAAATAGAAATCAATATGG

a score=130639
s chr3           149244812 5888 + 160039680 [encoded data, 6369 characters]
s HiC_scaffold_1 135902368 5620 + 233722169 [encoded data, 6369 characters]

a score=36549
s chr3           149251584 1968 + 160039680 AGGGAAGTATGCTGCAACTGTGAC-----TGAGGGCAGAACTAGGATGGAGATGCAGAGGA----AAACTCAGTTGTGAGACAAGGAA--GCTCTGTTTCCTC-CAGGCCTCCTTACTCCTCTGGGTGGCAATGACAA---------CATGTGT---gaaaagaaataaaagcagctgggcttgttttgtgggttccttttattgtttgggggagaattaaa------tgcccagacaatcaacagaacactagtcccgaagtcctagcaagtccactcaacttaaacacacctatttgcatttaaat-ttgacattgtgcgaagtaaacttaagcagtagaaatttgg-taatgatttacagttttt-ttcttaggacactgtct-gccgatagaaaccatgcgatgtcaggagagag----gcggtgaaggaaaaga-------------------------------------------------------------------------------------------------------------------------gcccaggaaagccttctatt-------------------------------cagggatgcctaactt-----------------ctcactgttctctgaataagagaccctgtgttttaattc-accctgaacccaacacacattacaactggcACCGAGAGTGGGAACCATTCTCCCAGGAGACTAGT---AACTGGGATGCTTGGGATGCGCATGTATGGGTATAGGTAGTATCAGTTTCCCATCTTTTCTGAATGACTTTATCTCTGATATCTCAATGACAATAGAGATCGGAACCTATTCTTAGGGCATCAAGAATTGAATTAGAAAGCAAACCTGTCAGTCCCCTGTCATTGTTCTATTCAGCTTTGCTTGGAAGCCTGATGGATGCCTTTCTGGTCCTGACACATGATGTATAGCCA-TGGCTCCCACGTGCTGCCTCCCTCCCGAGGAGGGAGATAAATGGCCACCGAGTAATGAGAAAAAGACTTGAGATGCGCACTGTTCCCACACACATGGCC---ACCAAGGAGAATACCACTAATTAGAGGCCAAGAAGCAAACAATTTGTAAATGAATTAGTAAATGAACAATGCCCTAGGGGCCCCAATGAGTTCATTTGCTTCTGGAGGATGGGCAATTTACCCC-TCTGCACTTGTGAAATCAATCCCTTGTTAGCACTGCTTAATGGTAGTGTCGTGGGGTTGAACTTCTTCACGTCCGTCCATAGTATGTCTGGCTAAGAGGGAGGGAAGACAAGG-------AGACCAGTGCAGGGTGTG-GCTCATGTCTTCGTGGAAGCTCAGGGTGGGTTCCCAGCAACTGACTGCATCTGCACA--------------------TTTCACCT------------------TGGC--------TCAAAGCATCTCAGGATTCTTTATCACATttgctatgt--------------------------------tgcctaggcaggcttcaaactaacgcattcaagtgaccctagtgcgccagcctccagaatggGTTGTTGTAGGG----------------TTCACACTTCTCCCTA-----------TTGTCCCTGTCACACTGCA------GATATAATAT-------ACAGTTTGCTTTGGGTATCTTTGAGGGCTTGACTCCAGGAACCCTGCATGTACCAGTAAGTTCAGATATTCCAGAATTGGACCATATCTTAGGCTAGCATCCCCAGCCTTTAAACCAGCTCTCTGTTCCTTACACTGCGTCCTACAATGGGAATGCTATGGAAACATTTTGGACTAGACCATACTAAATAAAACTCAACTATCTTTGTGATTACAGGACTTAACGGGGCCTTTGGTAGTACAATATTTGACAGACA----CAGGACA-------------AAAACCGCAGGGTCTGGGAAGCTTTCCCCACATACTTGGAGCAAGCATTCTTTTGGAATACATTTGGGGAAATGGAATGTTAA-TGGC-ATTTACGGATATCGCAGAAGTC----TGAGCCTTCTACTGAAGCAGAGCCATCTCTTCCTTTA-AGTGCATAATGCTTTATGAGGCAGGCTTGGCTGGGCTGGATAGAACCGTTCACTCCCATCCTACTTTTTCCAGGTTCTAAT------AGTCCTTGCATTTTACTCTGAAGTATCTTTACTCCAGA-TGGTCGTTGGAACAAAGGCCACTGTTTTGGAAGCTCTGTGTGTTCTGAT-----TATTACCCACGATTCTTTGTACCCACCAGTCCAACTCCC
s HiC_scaffold_1 135909830 2256 + 233722169 AGGGAAGTGCAAGAAAATTATGCCCTCTCTGAGAAAGGCCTTATGATGGTGACATAGGAAAGAACAAACGAAAATATAAAGCAACACATGGCTCTATTTCCTTTCAGCCTTCCTTACTCATCAGCAAGATAGTGAAGATAGAACGTGCATGTATcaagaagtgaaataaaaacagctgAGTTAGTTGTGTGTAGCTTTTCCACTGTTCTGGCAAGAATAAAAGGCATATGCACACACGAGCTACAAACTATGAATTCTGTAATTTCAGTGATTCCACGTGACTCAAATGCTCATATTTGCATATAAAGATTGGCACAGCACAATATAAAATTGAATGCTAAAATTCAAGCTAATAGTTTATGATTTTTCTTAGCAGGAcattaaatagcaaataaacaccATGATGAGTCAAGAGAAAGAgtggaggaaagggaaaagaaaagatttatttcctaaagtctttctttttctttttatggattGAACTAGGGTGCTCTTCTGCACTAAGCTATATACCCAGCCCTATTTATTGTTTAATctggaaacagggtctcagtattgcctaggctggctttgaatttgcgaTCCTCCTGTTGCAGCCTCTGGAGAAGcagagattacagacatgtgccaccatacccagattCACTGCTTTTTGAACAAG-GCCCCAGCATTTTAATTTTGTGCTGAACCGCACACACTGTGTAGCTGGCTCTGAAAGTAGAAA--ATGTTTCCATCTGAACAGTGTAACCTGGGGTG-----GATTC------------CTAGGTAACACACAGTTTCCGCCTTTTCTAAATGATTTTATCTCTGATATCTCAATGATGCGCGTGAACGGAGGCCCTCTTTAGGGTGTAAAGAATTGAATCAGA--GCGAACCTGTCAGTTCCCTAGCACCGTTCCACTCAGCGTCGCTCTGTGGCTTGATGAATCCCTTTCTGGTTCTGACAAATGATGCATGACCAGCTGTTCGCTCGTGCTGCCTCCTTCCCGAGGAGCAAGATGAATGGTCACCGTGTGATAGG----------GACCTGCGAACTGGCGAGGAGCACGTGGTCTGTCCGGAGGAGGATGTCACTAATTAGAGGCCCAGAAGCAAACAATTTGTAAATGAATTAGTAAATGAACAATACCCTAGGGGCCTCCAAGAGTTAATTTGCTGTTAGAAGATGAGCAATTTACCCCATTCTCATTGGTAAAATCAATCCCTTATTACAATTGCTTATTGCCAGGGCCACCTTGTCACACTTC-------CTATCCATACTAAGCCCCTCTGAGAGGAGAAAGTGCTGAGGGCCTCCTATGGCAGGACAGAGTCTGTTCTCTTGTTCCCATGGGACTTCCATGGGGTTCCCCAGTCCCTGAACAAATCAGCACACAACATCAGTGTGCCTTAATTGTCATCTTATTAGAGAAGCAATACCTGGCCACCCTCTCCAAAaca--gtaacacttttttttgcCCTTGTTATATACTATTTTCTAAGAGATGTGTTCTCTATATACTGCTCAGaatgagctcaaacttgtggGCTCaaggtatcctcctgcctcagtttcctgggtaGCTGGGACTAAAGGTGTGTGATACCACATTCAATACTTCTTGctaattcataatttttttctctattgcaCTTTATTTTCTGATACATTATATGCAGGACAGTTGTCTCCTGCTATCTGTAGGTG-----TCCCAGGACCCCT-------CTTATAAAATGGAAT-----AGTATTCACAGATGTCCTATGCAGTCTTCTGTA--CTTTAAATCCTCTCTTAATACCTAATA------CATATAATGTGGATACAAGATAAAATGTTTGGGAAAGACTGGATTA--------------ATCTTT---ATTGCAGGTCTTAACAGGGCCTTTGATAGCTC--TGTTTGCTGTCCATCTCCAGGGGAGATTATAGTGTATAAACCAATTGGGCCGTGGTAGATTTTAGTCTCCACTTAGAACAAGTGTTC-TTTGGAACATATTTTGGGAAATGTCATTTTAAGTGGTAATTTATTGAccttacagaattttaaatgagCCTTTTACCAGGGCAAATCCACCTATTCCCtcctattttttaatattttatgaggaAACCTTTCTTGGTCTGATTAGAAAGGTT--TTCCCACCCTGCGCTGCTC--GTTCTAATCTCATCACATTTTGGATTTCACACTAAAATAAGTTCACTCCTGACCTGTACTTGCTGCAAGCTCCATACTTTTGGTTGCTGCGTCCCTTCTGATCTCTGCATGTCCTATAATTCTGTACACTTGCCAGGCTGTTTCCC

a score=226650
s chr3           149255607 8382 + 160039680 [encoded data, 9016 characters]
s HiC_scaffold_1 135913771 8008 + 233722169 [encoded data, 9016 characters]

a score=28598
s chr3           149267440 2039 + 160039680 aaatcacatttccctctttttctggagtttgttgctgcttgctaatgattttgcttgtagcatttatttgacttctcttactgttgttggtcgtctctctggcaaaaatcagccagaagtttaaatttaacacat-------------------ttccaggtattttctgaacc------tttctctgggaatgtatagtctctttataatttttcttacatttacaaatttctgt-----gtcctagtttttagtatctgactcctgactcccaaaaagggGGGGGGGGGGCGAGgagagagagagagagagagagagagagagagagagagagagagagGATACAAGAACTGCTGGCTCTTTACATTGCTTAGAAGCCCCTTACAAGTCCGGTTAGTCAGAAGGGGAGTAGACCACCCTTTGGTACCTATCTGCATGCTTTGATTTCTGTGATTAGAGCAGAAATCCCTGAGGGCAGGA-TGTAATAGGC---CCCCTTACTAAACTGGATTACTGAATTAAACATATTACTATGTATGCCTAGGAGACTCTCAGTTTCTTAGTGTTTGTGAGGAAAATCTGCTTTGGGTCAAGAGGCATGCGTGTACTGGTTTCTGCA-TTCTCTGATAGTCCCTCCATTTCCCACCTCAACAAGCATTCAGATAATCCTCATGTCACATTCAAGATGGAAACTCTTGTATGCGCGAAAAGTGTCACCAAATATACGTCCCGA---------CATCTCAGGAGTGTCTGCTGTTCTCTAATCCA-CTCTTAGGAGCTTTGTAAGGTTTTAACCTCAAGTGTGCTTTG--CTCTTTAGTATTATTTTGTTTTAATTTCTTATATCATTCCATCTACTCATTATTTCAATGCTGTGGCCTTATCATTTCTTGCTACCTTTGTAACACCTTAGGACAGGCATACCCTACGGACGAATTAGAGGTGAAAGAACTCAACTACTTGAagctgggcctagtggtgcatgcttgtaatcacagcgcaatgggggagctgaggcagaggattactacaaatttcaggttaatttgggccacataggaagtttcagggcatctaaggatgcttaacaagaagctgccttagaaaacaaaaGCTACAAAATAACTCAAGCGTTTAGAAATTTTTCCTAACATGAAATAGATCTTA-AAGTCATATGT-------ATGAAA------TCTCCAGGGGCCAA-CAAGTGATCAAGAAGGGACCTGGTGGCAGAT-TCTATGAATTTGGATACAAGAAATTATTTCAGAAACCATATATGTAATTCTGGGAGAAAA--------GGTAATGTACATTTCGGTACCCACTTC-AATGAATTCCAGTTACCTAATCGCACTGTCCATAATGCGTGAGCTTTTTCTAAATGTAGGCCATTCTGTGCATGATCCCATAAATCTCTGCAGTTAGCCTTTTGAAGCTCAGCATGGGTACAATATTTTTCTCCAAATTAGTTAATACTTAGGGCAAAGATGCCAATAACGGGCAATTCTCTGTTGGGTTGACTTTAGAGACAATTTATAGACCACCCCAAAATACTCGCTCTTTTTAACCGGTGGGC--------AGGAATTGGAATCGAATCACAGAAACAGCTTGTCTCCTCATTCTGAGGCGTTAGTAGTCAGCTGAGAATATAAGCC-TGTGACTAGAGGGCGTCAATAAAGCACAGCGAGGGTCAGGGGC-------CGTGCAGACTCACTTTGACCATGC-CACTTTGTCTGGCCCGATTATTCATGTGCGCTGGTAAACA----CGTTATAGATACTAA--TGTACAGAAAGACACAGTTGTGCACACTTTTGTCCCAG-TGATTGGAAAGCTAAAGTAGGAGA------------CCAGAGCTCTGAGCCCAACCTGGGTTACTGACTGAAGAAATTTCTCCTCTAAG-AAACAAATAAAATAAAACCACAACCGAG-AAATAAACTCTTCTTGCA-----TAGTGTCCTGCTGTTAAAGATGTTGAATGGAAGACTTAGACATGACTGTACAAAACAGTAA------TGGCTTGCACACGGACAGTAGTATTAAAAAAGTCTGCTGAAGCCAAATACACACAGAAAGCATGAGGAAAg-----------gggctgggaggatggctcagt
s HiC_scaffold_1 135924295 1922 + 233722169 aaattctattttcctgttttgcaAAGGTTTTCTGATGGctgttaatgtttttctttatagctttttgttgttttctaggttTGTTAAAAGTTGTCACAGTACCAAGGATTGGCTTACAGTGCAAATGTAAAATATacctttttatttgatttgatttgatattttttctgaGCTGGTCTTTTACTCTGGGCATAAACAAATaccttttaattttccc--cttataCTATTTTCTGTTGAATGCCCCAGTTTTCAATGTCTGATTCC-------CAAAA-------GAGAAAGCATgtaaaaaatgaaggagaaacagAGGG-------------------------------TGCCTGTTCTTTAAAT---------GCCTATTG--AGTC--GTT--TCAGTGGGGAAGCTG-------------------CTGGTCTCTTTGCCTCTTGTGATGAGAAGCAGGGTGTTTGCTGGATGGACTGCAATGCTTACATCTCTTGCTAACCTGTGTCACTGAATTGAATACGCTACCATGTGTATATGAAAAGCCATCAGTTTCTAAGTATGTGTGAAGAAAATGTACTTTAGATT--GCCGTATACGTGcat--atttctccatttcttcctcAGTCTGTCCATTTTCCAGGTAAATGAGTATTTAGCTAATTTCAATCTCA-----AACATGGAAATGCTTATAGGCACTGACAGTGTTATTAAATATACAACTTTAGCTTCTTCTTACTTTAGCAaaattctgcattttctaatatatctttaaaaaacttCATATTGACTGAACTTCA--TATGATTTGACCCATTTGGTAT--TTCTGTTTGCAATTCAT---TCAATTAGTCTGCTCCTTATGTCCACCTTTCAGTATGA-CACTTCCTTCCACATTTGTAAGGTCTTA-GACATTTTCAACCT--------------------GGCATTTACCTTGttgaa---------------------------------------------------------------------------tttaattt--------------ttccctGTGCATTTAG-------TAATCAAAAACTATAATTGGAAATGAAAG---------AACTTAATCATTTTGAAG-TCTGCCAAATACGAGATAGGTTTTCTAACTTCTGTGTGCTGAGCATGAGAAGTGTGTCTCCATGTGCTGGCCAAGTG---AAGAAAGAGTATGGTGGAAGCTGTGTATAAATTTAGAGGTGAGAGATAAATTCAGAAACACTGTGTGGTACtttggaagaaaaatggaaataataatgcGTAGTTTGAGAGCCACTTTAAATACTTTCTATCTGCCTAATggta-tatacattttattttag-tttttctaagTGTAGTAGACTTCCTGCATTGCCCTACATTTCACCAGAATTGGCCTTTTAAAGTTCAATAT--GTAcacattttttctctgaattagTTAA----TAGTATATAGATGTCAATGTTTTGCAATTTTCTTTTGGACCGCCCTTAGAGACAATTTATGATCCACGCAGATCCATTAGTTTCTTTAAACCAATGAGCCATATGTTGGGTgctgaaatagaaaaatgaaaatagcttGGCTCCTGACCTTGTGAAGCTTGCGGTGAAGTGGGAATATCAGCCTTGTAAACACATGATGTCCATAAAATGTAGCAAGGTTCAGGGGAAAGGAAGCGTGCATAGAGGTTCTGGCCGTACATGCTATGTCTGACTTGTTTCCTTATTTGATGTGCTAAACAAGGCTGTTTTCCAAAGTAAACTtctcagccaggcacagtggcacaagcTCAGACTTCAGCTGTTTGGAACCTTGAACCAGGACAAATGCTTGAGTGCAGGAGCT-GGAGGTCAGCTTGGGCAACCCAGTAGAGA------TTGTCTAAACACAccagaaaatcaaaacaacaacaaaatgactaAACTCCTCTCACAGATTTTAGTCTCCTCTTGTTGAAGATAAGATAGAAAAGACTTAAGCATGATTCTGCCAGGAACTAAGTCCACTGGCTTGCATGCAGAAGGTATT----CGAAAGGCTGCTAAGCTTAAATCCACAC--CAAGCACAAGGAGGGTGCAGTGTGCAAGGCCAGGGTGATGGCTCGGT

a score=10551
s chr3           149269826 406 + 160039680 AAAGCCGCAAAACCAAAAGCC----TGGGGCTGAGGAGACTGCTGTATGTGAGGCCATGGGGTTAACCCAGCGG--GTCCACCTCCTGTGGGGGTTATTTCTCCGTCTTGG-TTCTCCATACTGATGGACTTTGATCTTCAGTCCTTCACTTGATTCATCATTTATACATGGTTCACAGATAGGGGAGTCAGGCTGGACTTCTAATCAATTTTTA------TACCTGTGCATTTCTTCTCTTTGGAGCAAAAACATTATTGCAAAATGCTT-TTTATTTACC-TGTAGGTAGGGCTAGGATTCTTTAGTGACCTT---AAGGCGGAGGGCGGGAAGACTGTAGCATCTGAGTGTACCATACAGAAAACAGCACTGTCTGCCAAGGGATGGACTCTATCCTTCAGGGATGGAGGTGCATTGTTCT
s HiC_scaffold_1 135926145 394 + 233722169 AAGGCTGCTAAGCTTAAATCCACACCAAGCACAAGGAGGGTGCAGTGTGCAAGGCCAGGGTGATGGCTCGGTAACATCTCATCTCACGCGGAAGTTAACTCAGAGTCTTTGCTTCTGTGTACTGATGGTCTTTGATCTTCAGTCCTTCACTTGATTCATCATTTATACATGATTCATTGATAGGTGAATCAGCCTGGACTGCTAATCAATGTTTACTTGACTGGATGGGGCTTTCTCTTCCTC--------------------AAATGTTTGTTTATTCATCACGTAGGCAGGGGCACAGCTCCATAGCAACCTTCTGAATGCAAAAGGTCACAAGACTG--GCATTTGTATATACCCTGC----AACCATGCTGTCT---AAGAAAT-TATTATTTCCCTAAGAAAATCGGGGTCATTGCTCT

a score=22968
s chr3           149272018 938 + 160039680 TGACTCTCTCTGCCACTGGTTTTACTCAGTGGTAAAGAGAGCTCTCT-CAGATGCTGCTGCTCACAGTATGAATC-CTTGTAACGTAATGGTGGAACATGTCAGCTTTCTGACCCGAGCATAGGGCCGCTCAGACACCTGTGGATTTA-AGAATTGAGATGTCTACGTGGGTCTGGGTTGGAGTTTATTCAGAAACCTAGAGCCCAAATGAAATGGATTTCTGCCATGGACAGTCTGTTTCCTTCCAC---AGTCCTGCCAGCTCTTTCTACTACACGAAGGGCCTAAGATTTAAGAATCAACTCTTTGAGGAGTTAGATTTTACAACTTAAGGacacacacacacacacactcacacCTTGTACAGAGTTGATCAATTGCTCTTGGAATTTCACTCTTGAAATCAGTTTTGCAACAGAGTGACTGAAGCTTTGACTCCCTCACAGTCT-GCAAGGCTAAGCCAGGAGCCCTCAGCCGGTACCCAGCTGGAGAGGAAAGCCGCTCTCCTTACATGGGAGACATA--CAACTTAAAATGTGGAAGCCGGTAACTTTAAAAATGTGTGTACCCTTTCTAAACGATCAAGTATAGCCACAAATATGTCCTGATTAAGTCTACCACAATTGCTTTCATTTGAGGGTTTGATTTAGTCTTTT-CAAAACCACAGATACCTAGAAACAGAGCGAGCCCAA----GTCCAGGAGACTTTGAAATGAGCCTGTCTT---ATTGTTAAACGTGTGTTGTCTGCCTCCCTGTGCCTATTCAAGATTTTGTGAGAGACAAAAAACATG-TTTGAAAATACCTTGCTGAAGCTCGAA-----------ATCCAACGTGAAAAATCACCTTCTCAACA----GCTCATTTCTAGAATGTAATCGGGCTTTGACTGTCGTCACAAGGAAACATGGGTGAGATGTCTCGTGCCTGGCTCATTGCTT-TGCTTACGTGATGCTGAGTC
s HiC_scaffold_1 135927853 884 + 233722169 tggCTCTTTCTGCTACCAGttttactcagcaataaagagaaATCCTTGTAAGTGTTG-TGTACACAGTACAAAACTCTTGTAAAGTCACCGAGGAACAAGCCTGCTGTCTGACCCAGCCTTAGGGCTACTTAAACACCTGTGGATTTATGGAGTTCAGATGTCTGCAAGGCTCTGTGTTGAAGTGCATTCAGAAACCTGGGGCCCAAATAAAGTGATCCGTTGAT-TAGGTGAGCTGTTTTGCTCCTCAGTAGTCCAATCAGATGTTT-GAAGAGGAACAGAGCTTAAGATTTAAGAATGCATTCTTGAAACAATTGGATTTTAA----CAAGG--ACATGTGGACATATTTTTATCCCTTGTGTTATATTGATCACTTAT------------------------------------ATGTGTCTAATGGT--------------GCCTAGCAGGTATAAG----------------GGTG--CAGCTGGTAAGGCCAACTGACCTTTGTACATAGAAGATTTACGCAGTGTAAGGTATGAAAACTTATATCCTTCAGAA-ATGTATACCCTT----AGCGATCAAATATAGACGCAAAGTTGCCCTAATTAAGTTCATCATAATGGCTTTCATTCCAGGATAtgatttagttttttgaaaaatcaaagacACCATGATTTAAAGAACATTCAGTCTTATTCAGGAGAGTTTCAAACGAGTTTATCTTATAATTGTTAAACATGTGTCTTCCATTTCCGCTTGTCtattaaaagttttataaaag----gAAACATGCTTTGAAAACATCTTATTTAAACTCAGACTTTGAGTcacatcaaacataaaaaataacctgCCCCTCATCTCTCTCATTTTTATAATCTAATCATTCTTTGACTGGCACTGtgtggaaagaaaaatgatttcac-cGTGCCT-gttccttgcttctgtttatacaTTGCTGAATC

a score=30375
s chr3           149273208 1983 + 160039680 TTTAAATAAAACTAGAGTGACATATTTATACATTTCTATGTGCTTAGCTGTAAAATGT---TTTCTATAAAATGAAAGTATAATGTATAAATGTAACATATATATATCAAATATAAATATGAGGAGATATATGATAAAGGAATAGGGCATAAATAATAATCTATAGGAGAGAATTATTTATATCACATCTGGAAACAGATGTCTGTCATCTAATGCCTATTGTGCTCACAAACATGAAGTAGAGA--------TATATCA-TATCATAACATACTGACGGTTATTTGCatttatttatttatttatttatttatttatttaCTCAAtcgcagtgctagggattaaagc------cagggctctgcccatgttggggaagcttgctacccctgagctccaAATTTGTCTGTATTTTAATAGTTTTTAAATCTTAAATCACACTTGTATAGCTTATAGTCAGTAATAGTAATGAAGGCATGAATTAAAAATAAGGGGAACATGCTTAGCTAATTCTCCCAAGCCGAAGTTGAGTTCAC--AGGCT--TATAGAGCTGTTATAATTTG-GTATTTTGGTTTCATTGTCAGAATTTTGCAAGTAAAGTGAGGTCTATGTGGTTCCCGGCCTTTCCTTG---CAATGGTCC----GGATTCTAGGTTTAAGATAAGAGGTCCAACAGTGATTATAGATGCTATAAG----------AAAAATATGC-----TTACttaataaataaaatatatacattttaaaGGACACACTTTGTCATTGTGATAAATCTTTAATTAGCAAATTTTCAGGAAGAA-----------ATATATGGTGACATTTAAAACCTCTAAAGAGATTGCTGGGCAATCGCTCTAAAACTTAGCTCAATCCTCCAGCCCCGTGGTCTATTTTTTTTTTTTTAATCAGAATTCACCAGAATCCTTTCCTATTAACAGCCAAGTCATTAGTCAGCACAGCCCTAGCAGAGCTAGCACGGTAAAAGAATTGAAATAACTAGTGGGCGGG-----GCTGTC-------ATATTTGACTTTGTACAGGTAGTCTGTCTGCTCTGCCCGAAATGGAGATTAGCTA--TTTACAAG-------AGCCGAGGATGGCAGTTGTGAACACAGGATGTCTGGAACTATCAACAGA--ACATTCACATGGGCGGGAATGTCCTAAGGACATGTTGGTAATGGGCTTGaaaaaaaaaaaaaaaaaaaagaaaCCACCTGGGAGGTAAATGTGTGTGAGAATGAAGTGGAAGAAAGGAGAGAGGGCTGAGTCTTCAGGAAGAGATGGCATCAGGAGCACAGGCGCAGGACCGGGGATGTCCCGGATAAGGACTCCCAAGCAGCCGGATGTTATCTGCTGTTTGCAGAGAGGCT------CTTCTTTATAAACCAGCCCACACGGTAAATGGGGCCCAAAGTGGGTTAGGGAACACTGTAACCTCATTTCACCTTATTTAGCTATGTGCCAGGGATCTCAGCAGGTAGTTCAATTAACTTCTACTAGTTAAATGGGATGAAAATGAGGTTACCCAGATTGACAAAACGCGACTCTGTCCCCTGCTTCCAATCAG----GAGGGGTTGTTCTCTGGGCTAGGGCTCTAGCTGGTGGGCCTCCAGGCAATTGCGGGTCTGAACTGAACCAGAGCTTTGGAGCTCAGGGCGAAGGCTCCACCC----TGCAGT-----CTCAGCGGAGACAGGAAAATTACGTTGAACTGATGGCGGCTGTACTAACGAGGATGGCAAAGGCTCATTGCTCGCCTCTCATTTTTCT--CTCTTCCT---ATGGCTGCAAGGCCGCA---TCGGAGAGAACCTCGTGGGATTT-----------GATTGCAGC-----GGTTTTCTTTTTCCATAGCTCGGATTTTGTGAGATTATTTCCCTA---TTGATGGAGTTTTTGAGCTTAGAAAACTTAATTAGCTCCAC--TTATTTCCA-AAATGATGTTCCAGAATCTGGAGTTAT-TTTAATATGTTTAAAGGTAC-----------ACTGGATGGAAATAGatttttttttttaatttaaaaaCAAAACATCGTTCAGTGAACGACTGTGTTTGGAGGTAG
s HiC_scaffold_1 135929332 1927 + 233722169 TTTCAATAAAATTCCAGTGATATAATTGAGCAT--CTATGTACTTA-CTATAAAATGTAAAGGTACACATAATGAGAGAATAGTGTATCTATA----ATATACATGTAAGGTA-ACATATAAGGGTATATAC--TCAAGGTGTAGG-CTTAAA--ATAATCtacaaaa-agaattatttatattGGATTTACAAATAGAACCCTA-------------ATTGTGTTTG-AAATACAAaatagggccaggggtttagctcagtggcataagtgcctgcctg------gcaagtgtgaggttgtgagttc---------------tatcctcggtaccaaaaactaaaaaacaaaataaagatattttcatgtGATAG-------------------------------TGCATTTTAGTAGTTTT----------ATGCTGTCCTTCTAGTGTAAAG-AACTGATAGTAATATAAACACAggttaaaag-agacaaaaagtatTTACCAATTACTTTCAGATTAAGTAGAAGTTTATGAAGATTAATATAAATTAGCTCTGATTGAAGTCGTATGACATCAACTTTAGAATTACAGAGGCAAAATCAGGTCTAAGTATCTGTGtgcctcattttaaaataatgatctaTATGGACTCCAGAATAAAAgacaataattaaatattatcttTGAATTTTACAAATTTCTGTATAATAAACAAGCATTATTTAGatagtaaatgaaaaacaaacattttcaaaaacataCTGGGTCATTGAAA-AAGTCCTTCATtaacttttttccttgaaaaacaaGTGCAAAAATATATTGCG-----------ctttaatgaaatt---------------------ttctttccttgttttggcCACAACTTATATTCTGTTCTCTGCA-TCTGAAGTAACTATTATCTGTTTCTACTAAAGCCCAAATAATTAATTAATGCAGTGATGGCAGTGCTAAGATATCAAAAGCATATAAACAGTTGGTGGCTGGACTCTTGTTGTCCGAGGCAACTTTTAACCTTGTACAGATAGTTCTT----TCAGGCTGAAGCAGGGATTAGTGAGGTCTGCAGGGAGGCAAAGCTGTAGAACGCTTTGGCGGACACAATGCGTCTGGAAACATCAATAGAGCACAGGGAGATGGGTGGGAAGGTCCTCGGGATATGCTGGTAATTGGCTTGGAAAAAA----------------------TGAGAACTGGATGTGTATGA-AATGGTCAGGAAGCAACAGGGACAGACTAAATGTTTAGGGAGAGGTGGAGTTAAGAA-GCAGGTG----ACAGGGAATCTTCCCGGGTGTACCTACGAAGTACTTGGATGTAATCTGTCAGCTGCAAAGTGTTTTCTGGCCCTCTTTGAAAACCAGCCCATACAGCAAATGGGGCCAAAAGTGGGTTAGGGAACATTGTGACCTCTTTTCACCTTATTTAGTTATGTGCCAGAGATCTCAGCAGGTAGTTCAATTAACTTCCACTAGTTAAATGAGATGAAAATGAGGTTACCCAGATTAACAAAACATGACTCACAATCCTCCTCCAAATCAGAGGCAAGGAGGCTTCTCCTGCAGCAGTGGCCTG-----------TCCAGACCCGGGCTGGGCCCATCTGCCCAGGCGCTCCTGAGCCGAGGCTGCA--TTCCTCCCAGGGTGCATTTCTTCCCTAACCAGGAAGGGAAAACCAACTCACCCGGGTGACCACAGAACTGAAAATGATGTCAG----TTGCTGCACACTGTGAATTTCTTCTGCTCTTCCTGGAATCAACACAGAGCCTCAGTGCAGGAAGGGTTTCCACGTGATTTACATCTTTGAGAATAGGAACAGTCAAGTTCTTCTCTTCTACAGCTTGAATTTGGGGAAAGGATTTGCCTACCTCCAGTAGGGTTTTCTAGGTTAGTAATCTCAGTTTGCTCCATAATTGTTTTCACAAATTATTGTCCAGTATCAGCTTTTATGTTTAGCATGCCTAAAAGGATTGTCACTAGAAACTAGACAGGAa-------------tcatttgaaaaaca--------tttaatagGCATTTTTTTTTAGGGGTAG

a score=38780
s chr3           149277144 1573 + 160039680 AAAATGACAACTTTAAAGTT---ATGTGAAATGAAGATGTAGAATGGCTCACTTAGAATATAGTATAAGAATAAGGCAGTTTTGGATGCTGAGTATGCTTGTTTGATTTAAACCCATTGCATATACAAACAGAACCATG-CCACTCTGCCTCATAAATATAAGAATTATATCAATAAAAGTAAAAATGTAATTTCCTGTAAAAG-GAAGTAATTTTAATTTGACTTATTTAGTTCTTTGTCTCCAAAATGTTGCTTAAACTCTGCCAACATTGGAAACAAAAACT-------AAGTATGTGTAAGTGAGTGGC-CTTCAAGATACACTGAAATATTATTTTGGATGGGTGGATATGAGTGAAGTACAAAATTTATGTGTATGAAAAATAAAAGTTAAATGTGTTTTTACAGAACATTTTCAAGCACtacatatatatatgtatgtatatgtatatatatatatatatacacacacatatacacacacatacacacacacacacacacacacacacacacacatatatatataCTTGATAAAGAAGTAAGT-----GTTGATGGTTCAGTCTGTATGGGGACA--CAGAAGAGCCTTGAGCTCTGACATGAAGCTCACTGTGTAGAGCTGGGCCCTGA-CGTTCTATGTAATGGACAGATAAGTATAACAGAACAGAAAACT--TCCAGTAGCATCTAATTTTTGTTTCATTGAAATAAGAAAAAAATACTTCAAATAAATGCATGCAGATGCCAGTAGTATTTCACTGAC--TTGCACTGATTACCAATAACTAACTAACTAAGTAACTAAAGTAAATACATGCTAAGAAGCAATCAGCACTAGCTCTGAACTACAGGGAG-CAGTGCTGGCCACAGACTCTTCCTTCCTGTGGGTAGTACAAAGGGGAATTTAAGCCCAGCTGCTATCAAT--GATGACGACAAATTCTAGCCAATCAAGCCAGAAGGAGCACTGGATGTGTTCGCTTTGAACTGCTTAAGGTTTAAACACCAGTGACTTGAAACCAACTCTTCTCATC----TTTTCCCAACAGAGACCTGAGTGCGC--TGCAAGGGCCAGCACCAGCCACACTTAAGGAG----CCACAAGTCTTCATAAGGTCCAAGAAAATGGAAGGGATCCCAGTTCAAGCTGGAGGTGTCATCTGGTTCTAGCCAGCTGGGTGACAACCAGGGTGACAGTGTTGAGGTGCTAGTTAAAAGGAATAGAC--ATTCTCACTG-AAGCAGTGGTCATGGACCTTTGCAGAAGTAGCTACAACCCTGTGCACACAGCCCAGCCT----GCCCAGAA------CTGGGGTCTTTTATCT-CTGTCTCACCTC-TAGCTTTCTCCGACTACA--GGCTTTGTTCATGATGGTGCCTCCTCTGGCCTCTTGTGCTTAT---TTAGTTCTGCTGAGCAGTAATTGTTATATGATGTATGAAGTGGGGAACACAGGCCCCTGGTGAAAGTCTGGGGGTCTATTTTGATTTTT----------TTGAAGTTGCTGT-TAAAATAAATAAGTAAACAATACAAAAGAAAAATC---TTCTAACATACAGGTGACATTCTCTGGTTCTGG-ATACAATGTGAGGTTGTTCCGTTCATGTCTCCCATGTTT
s HiC_scaffold_1 135932568 1477 + 233722169 aaaatGATAGTTTGGAAGTGGAGATACCATATGAAGATATGCAGTAGATTACTTTGAATATTATATAAAAGGAAG-TAATTTTAAATGCTAATTGCCCTGATTTGATTATTAGACATTGTATACACATGTCAAGTTATAACTGCTCCCCTTAATAG----------CACATCACCTAAAGT---------------TTTAAAAGCGAAGTAATTTTAACTTgaattaatt------ttgtttctaaGTTGAAAAT-ACATGGTGCCTacaatgtatataaatacatttacaaagaaataaaaaagggagggaTATTTTAATCAACTCTGA-----CAATTCTGAGGACCAAACCTAAG--ACATACGTAACTTAGTTGTAAAATAGACTGAAATGATATTTTATGTCACAGCTCAT--------GCTAAATATACA-------------------------------------------------------------------------------------------AGGTGCTTTGTAAAGGAATGAGTTAGATATCGAGGGTTCAATGAGtgtagagaaaaacagaagacaatTAAGCTCTGACATGTAGCTCGCTGTGCGGGCTTAGATTTTTAGCACCCTGTGTTATTGAGAAAGAACTGCAATAAAACAGAATGTGAATCTAGAAGCATCCCATTTTTGTTCtattgaaacaagaaaaaaac-cttCAAATAAATGCATGCAGATGCCAGTATTTTTCCCCCCACAACTTCACTGATCAACAA-------------GCGTCACCAAAA-------ATGCTAA-AAGCAATGAGCACACACTTTGAACTGCAGAGAAACAGTGATGCATGGGTAGCCTTCCTTGGTGTGAATATCATTAAGGAGAATCTGAACACTGCTTCTATTAATAAGACGACTACAAATTGTAGCCGACCAAACCAGAAGGAGCCTTGAATGTATTCGCTGGGAATTGCTTAAGGCTTAAACACCAGAGACTTGAAACAAACTGTTCTTATCACCTTTTTCCAAACAGAGATTTAAATTTACAATGAATGTGCCAGCACCAGCTGCACTTAAAGAAAGCACCACATGTCTCCATAAGCTCCAAGAAAATGGAAGGGAGCCCAGTTCAAGCTGGAGGTGTCGTCTTGCTCTAGCCAGCTGGGTGAC-ACCACACTGAAAGTGATGAGGTGCTAATTAAAGTGAATGAGCAGAGTCTCATTGTAGGCACCTGCCAGAGGCCTGTGCAGAATCAGCTAGAGCCCTGGGCATATTGCCCAGCCTCCCGGTCCAGCATGAATTCCAGTGTTTCTTATCTGGTTCCTCACCTTACAGATTTGCCcagctgtattttttttgttgGAGATGAAGACTCCTCCTGCCCCTTACACTTGCTCATCAATTCTCCTGAGGAAGAATTGTCACATGATTCAAAAGGTCGAG--CACAGACCCTCTCtgaaag--cagagatttttttc--ttcttaaacaaCAGATTAAAATCTTtgtgcaaaacaaacaaacaaacaa-acaatgcaaAAACCACTCCCAAACAGGCAAGCAACATTCTCTGGCTTTGGAACACAGTGTCAGGTTGTTCCATTCACACATTTCACGCCT

a score=31031
s chr3           149281989 1733 + 160039680 CCAAATGCCCTTTTTGGAAAGCACTTTAAAAT------AGTGTGCACGTGTTT--AAGCTCTTGAAAAAAACAAACGCATCAACGTTGCTTGGGGGGTAGTTGGTACATTTGAGCAACAGGCACGAGGGCAGCAAAGCGGGAGGAAGAGTGGTCAGGACTTGGATGCAGCTCTGAGAACTCAATGGTCAGATCGTCAGGGAAGAAGCTGAATACACAT-------CATTTTGGTCAAATTCATA------------CCTGTCAACAAT--CAGGACCTCCTTAGCCATTGATAAGAAAAATG-GCTGATGTTGCCTCATCTTCAAAGTGTTCAGGCAGGAATTTGTAAAAAACTAGACGCTTAACATTTTGTTGTAGCCCCA---GTTTTACAGATCAGCCACTGATGTCAGCAAGCACTGGCGAATGAGAGGAACAGAAAGGCAAGGCCACAGGAGTCTGCACTAAGACCGAAAT---GCCTCTGATTGCTTTTAGGCCTTGGCTTC--AGTGCACCGGCACTTACTACCCACTAAGGCA---------TTTTCTCGGC-------AAAGGTTAGAAGGCC-CATAGATGGGAGCTTGTAGCTTTGTCAGAGTGACAATCTTTCTTGCTGTTCCTTGAATTTACATAAAGTAACGATGCAAAGCGCTCATCATGCCCCAA----ACTCAATCTCAAACAAAATGACCAGTAATTGAAACAACCGAGGTAATTGGCCACGGATGATAGACAAAATCTCACTCCAAGGAGCTTACTGACTGGAAAAGATTCAATAACTCCAAAGCACTGGAAATATTTTAGGCACCACAAGCCCTCGTTTGAGTCTATTGGCAAGGAGAATGT--AAGAGTCCTTGATTGCCTAGCCTCATGCCGTGCTTTGACTAGACTCTGTAATTTCTAAAATGGACAGCATTTGTGGAAATGATCAGGCACACACCCCTTACCTACCAAGCACTGTGCGTGCTC------AAGGCAGACCATAGACTTCATCCTCATGCCACCTGGGTCTGGTTTACTGAACATGCTAGACTTCGTGGAGACAAAAGGAATTCATtctctctctctctctctctctctctctctctctctctctctctctctctcATATTAGCTTCAGCTAGATTGTGTCAGattcagtcactcaacaagtatttattgcctagatattataggccatgcaatattttaagccctTTAGGGCAT--AGGTTAAAACAAAGCTAAAGAGATGAG-------------CCTTTTAAGGGGTAAGATAATGATAATCATGGTAAGGGGTAAGGCAAACATAATAATTGTTTTCCCCATCTCTGAACTCAGGCTTATCCCA--CAGTTTGTGTATTCAAGTTATC-------ATTTAGTCCCTCTATTAGGACATTTCATGCAGTGCAAATTAAAATATTTGTTTCTCATCTAAATC-AAAGCAGCTTGCTCTCCTCTGATGCAGCCTGACGCAGTCTAAGCACAGCAGGAGCTCCAGAGTACAGAGAGCA---TGCACTCTC--------------CTCCTCACGCCTCCTCAGGCTCTCGCAGGAC---TTTCCTCAGATGCCCAGATGGCCAGGTTAAGTTA-TCTTGGTGTTCTGTTGTGATAATAACTC-CCCACAGTCGGGCAGATCT----CTGAGGATGTCAGCAGCCCTCTGGACATTTGCCTTGTGTG-AGCGTCA-------TTTAAGAAC---------ATCTGAGTAAATGGTTCATTTTAGGGAT----TTTGCTCAGCTTATAATGTGAAAGCATC-CACAGCGCTTGCCTAACAGGGGA--TCCATGATTCTACCCTTCGAA-----ACATATTTTTTTTTATTT
s HiC_scaffold_1 135937374 1754 + 233722169 ccaaattccCTTTC-ATAGAATATTCTAGAATGTGCCTAGCATACATGCTTTTCAAAGCTTTTGTGAA---CAATCTAATCTATGCTGAGGACAGGTTAGTCTCTGCCTTTG-GCCAGAGACTCCAGG-TAGCCAAGAAGGAGGAAGAGTTGTCAGGATGTGG--GCTGCCAAGAGGGATAGCTGTGC------TTCAGGAAGCAGCTAACTAACTATATGTGATCATTTCAGCTGGCTTCACAGATCCATCTGATATTGTGAAAGGTAGCAGGAACTC----------------AACAATGTGTTGGTATC----CTTTTCAAAAGTGTCCAGGCACTTCTTTGTTTTTAAGTAGATGcttaatattttgctttattcttattGGTATTGAAGGGCAATAATGGATGCTGGGAAACCCTagcaaattaaacaaataaaatgatgaagTTTCAG----CTGCCTAAAGAATGAATCATGGTGGATGATTACTCTCAGGCCCTGGCTTTCAAGTG-GTAGATATATACCACCTAAGAAGGTGGATTTTGTTTTATCTCGTTTTGTTTTAGAAGTTAGAAAACTATGCAGGTGGCAGACTATGTCTTAGTCAAAATTACTGTTTTTCTCCCTGTCCCTTGAATCTACATAACGTAATGATG--AAGTGATCATCATGCTCAAAGAGAACTCAATCTCAAATAAAATGACCAGTAATTGAAAAAACAAAGGTAATTGGCCATGAACGATGGGAGAAATTTCACT--AAGGATCTCACTGACTGAAAAAGGTTCAATAACTTCAAAGCGCTGGAAATATTTTAAGCACCACAAGTCTTAATATGAGTCTATTggtaaggaaaatttaaaagagttCTCGATAGTATGGCACCATGCAGTGATTTCACTGTGCTCTATAATTTCTCAAATGGGCTGCATTTGCTGGACTGACCA-GCATCCTCCTCTTACCTAGCAGCCAC--TTCATGCTCGTTAATGACACAGGCAATGCTTTCCATACACA-GCT------GTCCGCTTTACTGAGCGTGCTGGGCTC--TAGGCACAAAAGAAA----------------------------------------CAGTTTCCCTCCCAGCTACTGCTTCCCATCATATTGTGACAGATTCGTTGACTCATC---CGTTTACTACACATCTACTATGTGCCA-GCAACTATTCTAGTACTCCAGAGTATGCGAgccaaagcaaaactaaacagaatagaCAAAACAATCCCACCCTCAAGGAGTTTA--------AATTTTAGTAAGGAGATAGACAGTTAatgtaaaaggtttttttttttc------caggcatGTTCCAATaactttctgggtttttttttccctcacgtATTAATTTCAGCTATTGCAAAATTCGCTTATATGCAAATTGAAGTATTTATTTCACATCTGATTCAAAAGCTCCTGTCTTTCCTCCACCTC---------CAGTCTGTAGACC-TAGGAGAGCC-GAGTGGAGACAGAAGTCTCTACTTTCTTAAGATCTGGGTTCTCCCTGCTCTCTCTCATTCACTCCCAGGTCCCATTACCTCCG-TGGCAACAGGCCCTGGTCAAGCTATTCTAAGGACTCTCTACTGACACTCACTTGCATATAGCAAGGGAAACATTCACCTAAAATTTTCTGCAACCCTGTGGATTTCTACTTAGTATGAAGTATCAATCTCCTCTTCAGCCCTGCACTGCAATCTGAAATAATCACTCTCTTTTGAGTTCCTCTTTGCTCAGC-TGTAATGGGAAAAAATTGCACATTTCTTGTGTGATAGGAAAATGCCACAGTTCTACTCCTTAAAGGcctatatattcttttttcctt

a score=12671
s chr3           149283927 296 + 160039680 CAGGCTGTTGTAGCCATGGGATGCATTCATGCTCCAGGGAAGGGCCTGTACCAGTGGGCTCTGAGCTATCAGAGTGGCATCCCCACTAGGCTGAAGTTGAAGTCTAACAACCCAAATACGCATATTTACAAATTGTCCAAGAAAGGATAGACTCCCCCACAAATCAGTGTGATCCTGAGGGACTCACATAGC--------AGTGCGTTTTGTGTTGGGCAATAAAGTCTTAAGCTGCCTTAAATCCAAAGGACTCAGTCCCGGTCTTCCTAAGGATTTCTACCACCTCACTAAGAAAGCAGATG
s HiC_scaffold_1 219726795 298 + 233722169 CAGACTGCTACCACCATTGGTCGCATGCATGCTCCTGGGAAGGGCCTGTTCCAGAGGGCTGAGCCGTATCACTGCAGTGTCTCCACCTGGCTGAAGCTGATGTCAGGCAA------GGCGCAGGTTTACAAACTGGCCAAGAAGGGCCTAACTCCCTCACATATCAGTGTGACCACAAGAGGCTCTCATGGTGTTGCACAAATACATTTTGTGACAGGTACTATAATCTGGAGAATCCTAAAGCCTAAAGGACTCACTCCTGATCTCCCTGAGGATCTCTATCACTTAACTAAGAAAGTAGTTG

a score=15007
s chr3           149286099 987 + 160039680 AATTGGAGAGTTACAGATTGAAGAATAAATACCAAAGGCTCAT-GAACTGCAGTGGTGACAGGAATT--AGTTATCTCTTCCTAGATCACTAATAAACCAGCCAATATCCTGGAGGAAATTAGTTTAGAAAGGCTTTAGATGGTGTCTTCCATCTAAATGGCTACTCTTCTATGGTAAGGTTAAGATGTTAGCTCTAAAAAGAAAGAGAGGGCT--GGTCCTCCCCAACTTC-------------------AAGTAATAAAGATCTCAATTGCAGTTTCTACAGCTACAGCAACAGCAGAAC-CACAATTAGGGCAATTACGTTCCTCCCAGGAGTAGTTCCT-----------GATTTGATCCAGGCTTCAAGCT------ATTCAGCAGTGGTTTAAACCTACAAGAGGTGAGGCTTGTGTAGAGAGACCCCTTCTCTCTTCATATAAACAGCAGCAGCTCGCACGGTAACGCCTCCTCAAACACTAACAAATTAAAAATAACCCTATTAATTATTTTAATTCACTTGTAAAGACTGTAATAAGTGGATACTTTTGTCCTATTCTTAAACAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTAATTTGGATTTGTATCTATGTCCCATGTCTTTACATACATACACAGTGGGGTAAATTTCATATTCATCTATATAATATTGCAGCACATTATTTTTTCAGAATCTTCTTGATATTGAAATGCTCTAAAAGGAAAGGGAATTTTTTAGCCATCGAAGAGGATTCTAATGAGTCATTATTAAGCCTTTCAGATAAACATTGTATTGACATCTAGTGGCAACAGAGGCTGATAACAGATC---TATGTTGTAAGCATCTGTCTTATGATATTTTCCATCTTAAAAATCTCTTGAATAAAAAATAGGCAAAGAATATATCAAATACTGGGT-TGCAATTTTTTTGTACTGGTATATTAAACAGCAAAGATTGGTTTTGAATGATCT----TAAGAATTGTTTCATGGTTACCTGAGAAATA
s HiC_scaffold_1 135942039 786 + 233722169 AATTTGCAGGTtaaatatacaaaagtaaataCTAAAACCTCCCAGAACTG-AGTTTTgacaagaatttaaattatcttcaGTTGGGTCATTATTAAAT-Atccaacattttaaagaaaatgattttgaaaa-----tagatcatttcttttctctgaatta--ACTATTGTAACATTAAGGTAAGATatcagctttaaaataaaatgtaaaatttagaccttatccaatttctttttctttatccagttttgAATAATAAAGATCTCCTTTGCTGTTTCCATAAGTAATGTAAGAGCAAAAAACCTAAGTAGGGCAATTATATCCTGCCTATATACACTTTTCTTAGCAATTTAAATTTGATTGAGGCTTAAATCTGCTTCAATTTGACAACTGTTTATACCTGGATAAGGTCAAGC--------------------------------------------------------------------------------------------------ATTTCAG----------------------------------------------------------------------------------------------ATGTTAATATGA--------------------------------------------CGAATTCCATATTTGCTCAAataatattaca----ataaaattctcaaaagctttttaatattaaaatgcttTGTAAAGGGAACACAGTATTTAATCATTAAGTAGGATACTAATGAATCTTTATTAAACCTTTCAGATAAATATTGTATTGACATCTAGTGGCTATAGAGGCAGATAACAGATACAGTATGTTGAAAGCACATAGCTTAATGTATTTCCC-TGTTAAAAATCTTTTGAATGAAAATTGAgcaaagtatatataaaatactgaaTGTAAAATTTCTTTGTGGT-ATATGTTaaaatgcctgggatgaatttgGGAGTTACAAAGGAAGAATTATATCACAGCTAGGCAAGAAATA

a score=191214
s chr3           149289854 7786 + 160039680 [encoded data, 8383 characters]
s HiC_scaffold_1 135944034 7510 + 233722169 [encoded data, 8383 characters]

a score=16462
s chr3           149300310 1004 + 160039680 cttcaaataatttaagtggatagatctcatggagagaaaccttactacaata--aaCAAAATTAAaaacaaacaaacaaacaaacaaacaaacaaacaaacGTACGTTTCCTCGCTATTGACA---CAGTGCTGCTTGTTGAAAGAAGCAGAGTGTCTGTGTGGTATCATGACTGATTTAATGAGTTTTTGCAGCTTTGCTTAGTTGCAGTTTTCTCTTATCTA---AAGGAAGGTGACAATCTTTCTCTGATGGAGTCTTTGTAAGAATTCAGGACCATCCTGTTTACACACCT--TAATGGCTGTACACCTGGCAGTTGCTGTTATGATTGGAATGGAAGTTAAGAAGACCACGTTCATCCACTGGGCATTGAATTTATAATTTGACGTCGTCA--GATCCATAGCGCCAAATTGAAAAGCACATGTAATTTTCTCTCAGTAATGGGATCAATAGATGTCTAAGGTGTAG---CCTCTGTGGCACGGTGTGGGGCCTCTGT---GCAGTCTTATAAGTCTCTGCTGTGGGCTGAAGGGGAGGAGCTGAAGCCACTGTAGTGCCCACATGGCTTTTCTAGGGTGTTTTATGTACAATCACAGTTTCAAAAAAAAAAAAAAAACTCAGCTGGGCATGCGCACAGGCCTGTTTTTCTAGTCCTGGATAATCTGTGCCACATAAAACATT-CCTGAGTAAATTTTTTAAAGACTTGATTGGTCCAGAAATATAATTATTTTCCACTTGTACATCATTTCAACAA----GAAGGATAGATTCAATCTAAAGTTAAA----AATATAAATTTATACTCCACTCCTGGATAT-CTTATTCTGTATCAATTATTTGAAGATTGGTCA---------------AAAAATT--ATATTGATAGTAATATTGTTAATTAATGAATACAAACTTAAATCTTTGATGATGGTAGAG-AGTATTCATTCAATACTTTTTAAAAAGGAAAGAAAAAAATGTCAGAAATGCTAAGCTAGTTGGTATCCAATAGTTAGCATTCTTTCCTAGGCTATTAACAGtgg
s HiC_scaffold_1 135954381  915 + 233722169 CTCAAAATATATTAAGAGATTAGATCTCAC----ATAACCATTGCTttcatacaaacaaaac--aaaacaaa---acattttaacaaGTA--CTGACAAA-----------TTGCTATTTTTAGGTCACTGCCATTtcctaaacagaacagaaagtccATGAGATATAATTattgattttgtgacttttt-cAACATTGCTTAATTGCAGTTTTCTC--AACTGGACAAAGAAGATGATAATACTTCTCATACTGAGTCTTTGTAAGAATTCAAGATAATACCAAGTAAAGGCATGACAGTTACTGAAAACATGACAGTTATTGTTATTATCTGACTGGAAGTTA-GAATGCCAGTTTTGTCCTCTGGGCATTGAATTTATAATTTGAGGTTATCTCTGTTCTATAGCAGTAAATTGAAAAGAACATATAATTTTCTCTCAATAATGGGATCAATAATGGTTTCAAAGGTGGCTCCCTCTAT-GCA----GTGGTGCCTCCATTAGATAGCATAACAGGAGCAAGCTGTGACCAGAAGGTGAAATCCTGAAAT---------------------------GGAAgcttt-------------------gaaaatatcaaaactcTCA-----------------------TATTCCACT---------TCTGTGTCATTTTATACACCACCTTCGTA---CCTTCAAAAA---GATCTGCTCA-----Attgttaatttttacttttatttc-ttttagcaaCTGTTAAAGAGGCATTCGATGCAAAGTAAAAGTTTAATATAGGTAGATTTTTGTCACCAGcatgtaattattttt--tcaattatttgataaTCAATCATAGTTTAATATGCTTAATAATTAAATATTGTCAATAGTATTATCCAtaagtaaaaatgtatttg-----tttataatGGTAAAGAAGTaat-----agtgttatttttaaaagagaagaaaaattttgagaaacaaaaattttgttaGTAATGAAAAGCTagcat--tttctttgtatattaGGAGCAG

a score=71237
s chr3           149303863 2039 + 160039680 TCCATCTAGTCTAGCCTTCTTGTGCAGTGTCTCCAGGTGTTTCTCAGAGAGGCACTAAACCTGGCCTCATTGACGCAAGAAGGAAGCCCTCAGGTAGGTTTAATGCCAAAGATTAAGGCTGCATTAAGATTAAGTCTGAAATGCACCGCCACCAATTAGCCCTCTGGTCTTTCTGTAAGCCTTGAATTTTTGATGCGATCAATGACACCAGTGGAGCCATCTTCTGTGCAGTGGTTATTAAAGATATAAAAATCAATACAAAGATGATACTTGGAAATCTATATCACAGGATAATGAATCGCCATGAGAGCCCACTAAGAAGAATGTCAGCAAACCAAACAGAAGGTTCGTGCACAACAAGGCGTTTCATGCCGGGAGAATTGCAGCTAAATTTTGTATGAGACAGACATCCACAGAGCATGCTCACGGCACAGTTGCAGGACACGGTCTTAATAAAA-TTAAGACAGAATTTTAGTAAGGCAAAAGGCTCCTGCAGCATTCA---------------------------------------AAGGGGGAGGGGCTGTGAG-----------------------------------------------GAGAGGTAAGGCGGGGGCAGCAAAGGA---------------------GCCAGAATTGAGATGTAAGGCTGAGCCAATAACACCATGATTTAACTTC-----ATGACAAAACAGCATCAAA---CTTTCTCTGTCAGTAATCCTCACTCAATTTCTTTTAAATGAAGTATGATTTGCCTGCACCTTGCGTCTGTGAGAACTGATCGCTGGTGGAGCTGGGTCTCAGGGCTTCACAGAATGGCCCAAATTTAATTCGAACTCGTGATTGATTTCGTTTCCTTCAAAGGAAGTTTTATTTTTTCCTCCTCCACGGTTGAGCTAGGGCCTAACATGGCACGTTCATTTTAGTTCCCCCCTCCCCCTGCCCCGAGATCCCATGCAAGTGACATGAGCACATTCATGTGCTTCATCCTTAAGGGATGTCACAGCATTGCCAGTGATGTCACAATCGGCTAAGAATGACTCT--GTGCTTTGAGAAATATGGATTCCCTATCATGTCTTTTGTTCTTTCTCTAGATTGGtttacttttattttaagtgcattcctgtttggcccgtgggtatgtctgtgtactgtgtgtgtgtctggtatccaggagggtcagaagaagatattgggtcccctagtactagatttacagatggttgtgaaccactatgggctctgggtcctctgaacaaccagtcagagctcttaaatgctgagccatctctccaacGTCCACCCCCATCGTTTCTTAATTTAGGCTGCTAAGCAAAGCAGAAAAGAACCAGGCCTGTCACAGTCCCCA-TTCACTGAAACACTGTATATTTAATAGACATTGA-ATTTATGTCTGAGATTTCCCAATTTATAACTATGTAAATAAAGTTTTATAGACAAGGATTAGGAGAGGATGTG-TTTTGTGTATATTGGGTGGTGCGAAAGTCATAAATGTTTCTGTTTCCTC-TTCCTGCAGATGCGTGCAGGCGCCCCTTACTGCAATTCTCAAGGGGGACGCCCTTACAGAGAGGCAGGCTCCAGACTCCTGAGTATTAAGTCCTTAACTGAGAAGTCTGCTTCTGTGCTCATCTGTAAGTGTGTTGCTTTAGAGAGAGATGGTATTGCTTTTCTTAGAGTCTTTTCTTCTACTCCCCGTTCTGATGCCAATACAGTTTCCAGAAAATGAAACAATGATTAGTTTATATTATAGCATA-GTAAGTCGGGTTTCTCTGAATTTTCATTGCCTGTTTTAGAGGTTGATTTAATCAGCTGTG-GTTCTTGTGGAATCGGTCAG---GGTTTTCCCCC---------TCCTCCTAATGTATCATAT-----TGA---AGCGAGACACACCCC-TGTCTTTTTAACAGGTCTTTCCAG-TTTTGACTTCATTTACCACCCCGCCCCTCACTGCTTTGTCCCCCAGGCTCCCAGAGCAAAGGAACCATCAAGTAGCATAAAACAAGA-GAATTCAGTTAGACATAAATAAAAGGCAGATC--TCTTGTTGGCAAGATCTGCCGTGATGAGCAAAGCCTGTGGTTT-CAATGCAGGGTTTTCCTGATTGTGCAGACATCTC-TGATT
s HiC_scaffold_1 135958207 1912 + 233722169 TCCCTATGCTCCGGGGTTCTGGTATGTTCTCACCAGGTGTTTTCCAAGGAAGCACG-----TCTCCTCATTGACTCTAAGAGGAAATCTTCAGGTAGGTTTAACGCAAAAGATTAAGCCTGCATTAAGATTAAGTCTGAAATGTACTGCTACCAATTAACCC-CTAGTATTTCTGTAAGCCTTGAATTTTTGATGCAATCAATGACACCAGTAGAGCCATCTTTTGTGGAGTGGttattaaagatataaaaatcaatacaaagatgATACTTGAAAATCTATATCACAAGATAATGAATCACCATGAG--CCTGCCTAGAAGAATGTCAGCAAACCAAACAGCAGGTTTGTGCATAACAAAGTATCTCATGCCTATAGAATTTAAGCTAAATTTTGCATGAGACAGAAACCTTCAGGCTACACTTATAATACATTTGCAGGACAAGGTTTTAATAAGATTTAAGACAAAAGCCTAACTAGGC-AATGGCTCTCATTGCACTtacaggagaaagaggaggaggaggaggaggaggaggaggaggaggaggagagacagagagagacagagagagagagtgagagagagagagagagaaagagagagagagagagagagagagagagagagagaggaactgTGTGTGGAGAGGAAAGTGCAAGGATTGAGATGTAAGACTTAGTCAATAATGCCATGATTTAACTTTAACTAATGGCCAAATACCATCAAAACTTTTTCTCTGTCAGTAATCCtcattcaatttcttttaaatgaaacattatttGCTTGCACCTTAAGTCTGTAAGTACTGATTGTTATTGGAGCTGTGTATTGGAGCTTCACAGAATAGTCCAAATTTAATTTGAACTGGGGATTGATTTCGTTTCCTTcaaaggaagaatttttttttcct--tccaaaattGAGCGTGTGCATGACTTTGCAAGTTCATTTCAGTT-----TTCTCCTTGACACAAT------TGTAAGTGACATGAGAACATTTATGTGCTTTGTCCTTCAGGGACACCACAACATAGTTAATGAGGCCACAGACGACTGGAAGCTACTGTTATCCCCTTTAAAAATATGGATTCTCTGTAATTTCGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATTT----------GCTGCCAGGAAAAGCA-AAATTAAGCAGGCCTGACATGGTCAGCAGTCCATTAAACCATTGTATATTTAATAGATAAAGAGGTTTATGCCTGAGATTTCCCAATTTCTAActatgtaaataaagttttatggtCAGGGATTAAGAGAGGATGTGTTTTTGTGTATGTGGGATGGTGTAACGGTCGtaactgtttctgttttctcttttctggaaGCACATGTACAAGCCTCATGCTGGAAGTCCTAA-GTGGCTGTGCTGATGGAGGGAC---------ATCACGGAGTATTAAGTGCTTGACAGCAAAGACTTGCTCTTTATTAATCTGTAAACTTAGCGATGTGTAGActgatgtctttgtttttcttggaatgTTTTCATCTGTTCCTCACTCCAGTGCCAATACAATTTCCAGAAAGTGAAACAATGATTAGTTTATGCCACTGTGTATGAACTTTGGTTTTCTGTCTGCTTTCATGGCGTGTTTCAAAGGTTGACTTAATCAGTTGTGAGTTGTTATGGAGTCAGTTAGGCTGGAATTCGCGCAGACTTTTTTTCCCCTGGTGTATCATATAACAATAAGACAGCTAGACACACCTTATGTAGTTTTAACAAGTCTTTGCAGTTTTTGACTTAATTCATTTCCCTCTCCTTTACCCCTTG-------AGGCTCCCAAACCAGATGAACCATTCAGTAGCATAAAACAAGGCGAATTAGTTTAGGCTTCAACAAAACACAGACCTTTCTTGCTGGCAACATCAGTCTGGATGTGTGATGTCTGTAGTTTGGGATATTGTATTGTGTTGGTCATCCTGACATCTCATgatt

a score=36696
s chr3           149306728 2254 + 160039680 TTAATCAGTAGGAGGAGTAAAACA----GCAATTGAGTAAGAGCAAAGATTTTTGTAGGAGACCGATGGATTAAAAAGTGAATTTTAAAACTTGGGCAGGTCTGCC-CATACAGAGCAA-----GCTTAGCTTTCAAGCAGTGTTATGTTCACCAGATTAAAAACTGATGAAGTCTTAATGGGCC----------GGGCAGGAAGCAGGCTAGAGAGCTGGGAAGTGGGAGGTGAACCAGAAAATCTGATCTTTCATACAGCTAATATGCTCAAGAGAGACAGGGGCCCCCACAGAGAACACTGACCACATTCCGTAAGGCACAAAGGAG--ACTTGGAAAAAACACCTATAACTTAATTTGGGACTCAAGAATAGAGATGTATTATTTTATTATGC----------ATTATAATACCCAATATT-------AACACACTCTT-TAGTTTCTAAGTAATTAAACATGATTTTAAGTGATTATAGAATTATCACATGATGGTGGCA---AAAAGAGTCACACTGGAATTACACACATGGCCGTATGAAGTTAAGGGGTTTTATTTTGTTTGTTTGTTTGTTTTTCCTAAACAAACTTAGAACTATGAATACTTGAAGGCTTCTAAGAGTCAAGGCTACACCATACCCTTTAACAGCCAAAGTGCCTGCTGTCTACTTGGCTCTTATAAACT---------GGAGAAAGCAAATCTTAGACAGTCTAAATTTAGGAAAGAGAAATCAGGATTCAAGATACAGTCACACATATATCgtgtgtgtgttctgtgtgtgtcctctctctctctctctccccctcccactctccctctccttctccctctccctctccctctccctctccctctccctctccctctccctctccctcctcccctctctctctttgtgtgtgtgtgtgtgtTCTAtttgcacttctgggtttgaacctaaggccttgcacacactaagcgttcatgctgctgctgaTACCACTTTAGCACTAGCCTACTGATTACAGTAGGTTGAGATTGGGCGAACTGAGAAAAAAAACAAA--------ACACACAGCCGAAGGCTAAGAATACTTCTGTTGCGTGTTGACAGAAACGATTGTCTTCACAGTTT--TTCTTGTACATTTAGATATTTTTAAATTCTCTGCAGTAGTATTTCCATTATTGTTGAGAATAGAAAGAAGGAGATCAATGGGAAGTCTGATTCTCACCACTGAAAACTCTGC-AGATGCAAAGCGAATCCATTTTACGACCGGTGAGGCCTTGAGCTA--GAATGAAGACGACCTCCATAGAAGTGCAAGGGTGGTTTATACATTAATTAATTAATTGAGGAGGCTTCGGGCAAAATCAGGGCTCCTGATTAGAAAGGCCCCTGGCAAGGAAGATTTGATAGACAT--GGGGGAAACTGTAAGGCCAATGGACACTCCT-----TAGCAAGAAGAGATGTTTGTGTGTACCAGCACGCGCGCGCGCGcacacacacacacacacacacacacacacacacacacacacacacacacacacCAAAAAATGTGCAACCTGGCAACCTGAAA--TCAGAAGGAGGTAACAATTAAATAGACAGTGACTGGGAGGGAAACTGGCCTTGAACTAAGCAACAAAGAACCACAGACAGTCTTCTGTCTTCTCAATATCGAAATTATTCAAATCCACCAGGAAGTCAGGTTATGGAGTGAGGAACAGCAACCTGACTCCTAGTCTGAGAGACGCCTCTGTTCCCG----CTTTAAGTCATCAGCACTGGGTCTGCTTCATTACCG--GGGGGCTTGACTTTCCCTCCCAGAGAAG---CACAGACTGCCTTCACTCTCCCTAATTCACTCGCTCACTCCCAGAGTCATTGATTTTTCTGAATCTGTAGCTCATCTGTTTGTGAGATGTTCATTGACTCCATGGGACAGAATGGCAAGCATCGGTTGATGTTAATGTACATGCATGCAATAAAACTGTCAGCCCAGTCATCT----AGAATCTGAACAAAAAGAAAAGACATACCTACACAATGAAGC-----TTGCTGAAGAGAGG---ATAAAATACCTGTGCTTaaagagtcta--tccttgggctgcagagagacgtgggttcaaaccctagtcccacctctttacgtagttgctacatttgatcaaattatacttttgagcttc----atttatgtttaagatgagaacagcacattactcccgatgtgtgtttggtgagaatcacatgaACTGTGCGCAAATTTGA--ACATGCAATAGTAATGGGTTCATGAGGAACTCAATAGAGCAAATAGTCAATATGGCTATCATCATTAGAGAC
s HiC_scaffold_1 135961271 1949 + 233722169 TTAATATACAGAAGAAGTGAGATACATAGCAATTGTTGAAGAGCAAACTCCTTTCTAATGGATACATG--TTAAGAACTTCAATCCAAATGTCGGGTAAATAAATCATGTACTGTGTATTAAGTGTTTAG--GTCAGACAATGT-GTGTTTATCAGAT-AAAAACTGATTAAG-CTCAATAGACAAATTAGCGTGGGAGGGGAGGCAGGTGAGTCACCTAGAAGGTGACAGGTGAACCAGAAAATGTAAACTATTCTCCAGGTAACATGGGCCATGGAATGA-----------AGAGAAAATTCAGTAAAATCCCTTAAG----AAGTAGTTATTTG------AGATCTATA-------TTAGAAGTCAAGATGATAGATGTGCTATTCTATAATGCCATGACATATATTATAAT--CTGATGCTGTCCTAGAATATACTGTCCTAGAATCTATGAAATGAAA-GTGGTTTTA--TACTTAGGAAATTAACATGTGAAAGAGGTAGACAAAAGACTTACCCAGAAATTACACACAGGACCATATG-------GGAGTTACATTTT------------------TGTAAACAAGCCCAGAAATCTGAATACCTCTAGGCATCTGTGCGTCCATGTTTTACCAAGTCTTTTATTGGTCAAATCTCCTGCTGGTTACTTGGCTCTTAAAAACCCGGGAACTGGGTGAAACCAAACCTTAAGGGCTCTAATTTTATAGAA-AGAAAGCAGGAT-CAAACTGTACTAAAGCAAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAACTTAAAGCT------AAACTA----------------------------------TAACCT------------------------GGtaagtcaaaaaaagaaacagattagaaagaaatacagcaaaacaTGAATGATACTTCTTTTTCAG--TGacagaca-----atttttaaaatttcctccttgCATGTTTTGATATTTACAAATTTTCTACAACAGGATTTTTACTAC------AACCAGAAAACAAGAGATCAATAAAAAGTACAAT-CTAACTGTTGAAATTATTGCTATatacaaaatgaatacattttaccACTGGTAATGCCTTTggctatagaggaaataagaTTTTCATAGAAGCACTATAGTGTTTTATA-----GCTAATTAATTGGGAAGGCTTTGGGCAAAATCAGAACTTCAGATCCTGAAACCCAAGTGCAGTGAAGATTTGATAGACACCAGGAAGAAAAGGTAGGATCAATGGAAGGTCTTCCAGATAGCAAGAA-------CTTTCTATCCC--------CGAGTGtgtaaaaatatg---------------------------------------------ataaatgtgAAACCCAGGAAAAGGGAGCTTTATATGAAAGTGAATAATAAATGAGGAGAGATTAGAAagtaaactggccttgaatttgaaaataaagagcaaTGAACATGACTCTGTATTTCGGATGTCGAAATTAAGGAAGTCCACTGCGACATGAGCTTATGGAACGAGCAAAATCAACATAACTGCAG---TGAGATTCATTTCTGTTTCAGGGGCCTTCAAGGCATTAACATCGGGTCTGTTTTATTAACACTGTAGCTTTCCCTTTACTTCCAAGAAAAAGCATATATAATGCTTTTGCTCTTCATAATTCACTTGCTTACTCAaacattcattgatttttctgaatctgtagcccaTCTGCTTGCAAAACATTCATTGACTTCATGGGACTCAGTGATAAGTATTGGTTGATGTTAATGTACATGCATGCAATAAAGCCGTCAACTCAGGCATCTTCAAGGTACCTGAGCATATGACTAAAGCACCATTAGACAGTGAGGCAACAGTGACTGAAAGGTGGGGTACAGAATG--------GAAAGTGCATGGTTCCTTCGGTCATGGAGGCATATGGGTTCAAATCCTAATTCTGCTTCCTG--TTACTTGTTTCATTTGATCAAATGATACCTCTGAacctcatttatttatatttaagctGTAGATGACCC--TATTTATAATCTAGCTTctacaaaaattaaatgag--atacatCAATTAAAGTATATACCAGAGTGCCAGGCACATAGTAAACCC-------CTAGTAGT-AGTATAATTATTGTcattgggggc

a score=69837
s chr3           149312841 4042 + 160039680 [encoded data, 4556 characters]
s HiC_scaffold_1 135965085 4209 + 233722169 [encoded data, 4556 characters]

a score=31751
s chr3           149317115 2652 + 160039680 ATAAATAACGTAAAGTAAAATTGACTATTTTGAAGAAAGCTGTTCTTTAGGATTT-TCCACC--------CATTACTACTTTTTCAATaggct-------------------tggctacaaactcccaaattcagtgattcccctgcctcagtctcccaagtagctgagattacaggtgcatgccactgcacctggctcctactgtcttcagaatttgaaattactt-------------ttcaacttccaaacaatagcactttaatagactaagtcTAAT--CCAGGTAACAACT-TGATTCACATAGTGATGTGTGTGTGTTTACATATATAAGAC----------------Tgctagaca---------------------gtggtggcacacgcctttaatcccagcacttgggaggcag------aggcaggcagatttctgagtttgaggccagcttggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaacaaaaaaacaaaacaaaacaaaaACACAAATATAAAACCACGACTGTAAAACCCTAGTAATAAATAGTGTCCTTTAATCTGTAGTGTGGCGGAGAAGGTTTTAGCAAGATACAAGTGGCAATAAGTTCCCAATGACATTAAAGCAAGATT-TCATCGGCTGAATGCAAATGAACATAA-------TTACGAGTAAATA--GAGAAGTG-TAAACAATTC----ACGAAAAAGTTCGAGAATTAAAACAATATCAGTGTAGAGGGGGAAAGTTCATTTGTCATTCTCTCATCTGGAGAATAGGCAAAGAAAAAGAAAAAAGACTTTTTTTTTAAAAAAACAAAACAGGGTAGTGTTC--AGGTTGCCTTACATTT--------AGACATGCTTAACTTCCAAAATGTTAAGCAAATGCCTT--------TGCCTTGAACACGTGCATCTCCTCTGCTTGTCCCCCTGCCTG----------GCCTGTGGTGGTAAAAACTCCTCCT--------------------------------------TCTCTGTATCG---------------------TCCCTTGAAGAACAGGTACAATTACTGAGGTGG----------ACCAATTCCACTCTGCCATCTTC-----CATGGCACAG------CCCCGGAA---------AGGTTTTGCTGTTATCACCAGTATTGCCATTTTCCTACTTA---CAACAACTCTTAGAGGATTCTAAGCTGATTGGGATATTCACAGAAAGAAGTCTGCCCTCTTAGTTGGGGGCTTGGCTCTAGGACAGGGACATTAACCAGTAGGCAATCTATTGGAAACAAGGATGATGTTTGAGCAAGGAGTGAATGAGCTAGAAATCCAATTTTGGCACACAAGCCA----------AGATCGGAGCAAGGACAGAAGATGAAATTAGTCAATAATTAACCCAACCAACAATTTCATCAAAATTTAAAGTGTAA---TGTTCTTCTGAATAGCAGTATGTTACATTAGTAGTATACC-----------------ATAAGAATAAG--GTTTTGAATAGTATATAGTACTCATTGGGACAATGATCTATTAGATGATTAAGACTCAGAAGTTA-AGAAGTTGGTGAAAGTCT-ATGCTCTCATGGCTGGAAGGTACTAAT--AACATCAAACAAATCAGAGGGTGTG-------TATTGGGAGTG---GCTTAGTCTGGGAGGACTGGTCCTGGTGTGCTTACTCAGAGTCTAAAACTGGGAAGATTGGCTAGTGG---GTTTTTGCAGTCCAGACACAAAGGCCATTAATGAGAAGGACGATGAGGTGGCAGCAGGGAGA--TAAAAGGAAGCGAGAGCTGCAGGAGGTGTTTCAGAGACCACCAGGAGGAGTTGGCTGC---------TGCATCAGGGAGGAGTGGACA---ATGACACACGAGAAACATGCTCCCTCACAGAA-AAACCCGGAGGCCTCCGATGAAACTGCAGATGTCCGAGGGGCACACTAGTGTGCTGCGGTGGTGACAAGCATAGCTAT-GCATGCTCCTTCCTACTGGCCGAGTTAGAAAGTCTCAGGGAACAGCAGCAAGAGAGCCCTAAGCA----------CAAGGCTATAAATGAGGGATGGAGTGAGGATGAGAGATGTCAA-------ATAGATAAGATAGCGAATG--CTAGGGTTGTCTAAAACCACCAAAGCTAAGAAAGACAGCAAGACTCCTTAAAGAGGACGTTTTGGGAAAGGACAGGCACAAC------AAGCAGGGCTGG-----TGGCAAGTGGGTAGGAAGC----CTCTGATCTCCTTA-----------GCACTGGACCCGTGAGCAGGAGTCATTGAAGTACTTTTCATGACAATCCTTAGAAAATTGACTTTGTCATAAACTCTACTTCATAAATTAGAAACTGAGAGGAGAGAAAGTTTGCAAAG----ACCACACTTTAGGCACCACAGGGGCAAACTTCAGATTT---AATTACACCCCAGCATCCTTGTCCTTTCTAAGTGTGCCTGTGGCGTTAAGGAGGG-----GATTGTTTGTTGACtttgcagctctgtccattgaacccagggcctcaagcggtctgggcaagtactctacctctgagttcaacactcagcccAGAACGAGCTAGTTTGCATAAAACAA-TTGCGCTTAAAACAAAATATCC-CACAGATTATATTTTCATGGTTCATTTAGC-GAGTGAATGATCACAGTCATAAGGCTAAAGCTGACTGTACAACAGGCCTGAGAAA----CATAGGTGAAGTGGGAAGTTTTCATATTTTTCAAATAGCAGCATGCAAAATAAGTATGTTCCACATTCAACAAGTGCTGAAAAGTTTATAGGA-------------GGTTCCCAGGCCGTA-GTGGGAAAGGGAGAG----GCTATCATGGAAGCACATCCTACGTTGGGAAAGTAAAATTCA
s HiC_scaffold_1 135970178 2825 + 233722169 ATTAATATTGTTGAAtaaaa---actatttagaagaaagctGCTCTGTGTAATTTCTTCACAAAagagagtatttttctttttaaggcaaGATCTTatcatgttgcccaggctggcctcaaaatttgGGTTCACGTGATCTTCCCGCCGCAGCTTCCCAA-TACCTGAGATTATA------CACCATTACACTGAGCTCTGAATTTCCTCAGATTTTGAAATCAATTCCTCCAAAAACATTTCTATATTGAAAGTACTTCATTTTAAT-GAGTAAGTCTGATGTTTGAGCGACTACTATTATTCCCATAGTGATACTATTAGGGTTAAAGATAGAAAGCCTGAACTTTTCAAACCtgtgaagcaaaaaaaaaaaaaaaaaggggtggggtggggtggggatttagctcagtggcataagcgcctgccttgcaagcaggcag--tcgtgagttcgatccc----------------tggatccctgg-----------taccgataaaaac---------gaaaaagacaaaacaaaacaaaacaaacaaacaaa---aaacccaaaacaaaacaaacgt-gTGA-----AGCATATCTTAAACTATGATACAGATGA------------ATGATTCAAGGCACAGGAAGTTCCAAGTCGTATGGGAACAACATTGTCATCTTCTAAATGAAAA--AACATAAGGGCCAATCATGAGTATACACTGAGAAACGATGCATAATCCTCAGCCAAAAAAGcacaagaattaaaataaagcCAGGTGACATATGAAGACT---------AGCTTCTCAGCTGGAAGAGAGGTGAAGTGGAAGGAG------------TTTAAGAAAGGAAACCTTCAGAATCCTCTTAGGTTGTCTTacatttgcaaaagaaaacaagttgaTCGTGAAAACTTTTAGGGAAACTCCACAACTGTACTATTTtgatttctctctccctctctctctctctctctgcctgagTAGAATATgcttattgagaaaaagaaagcttctatctgagagagagagacagacggaGTCCCTAGTGGGTTGCCctgttttgattttgatatgtgCATCTCTTTTCCTTGACAGAAACCTTC--CTGCCTAGACGGTGACCTCCTAACTACTTGCACCC---CCTATTCAGGAGCAGGCCAAAGAGTGACCCGCGGAATACAGCCTGAGGGTGCTTTGTAATCACAA----TATCATTTCTCTAATTAAAACAACAACTCCCAGAATATTCTGGGTGGAATGGAGCTTTCACCGAAGTGAGTC-ATTCTCTTAATTGGGGTCTCAAGTTTCAGGATGGGGCAGTAGACAGCAGGCAATCAATTGGGAGCCGTGATGATGTTTGAGCAGGGAGTGAATGAACCAGAAATCCAATTTAGGTAGATGAAGTGTGTGTACTACAGATCAAAGCAAGGACAGGAAGCAGATTCGTTCAATAATTAGCCCAACCAAGACTGTTagtaatatctaaaatataatagTATTATTTTCAATAACGAAATTCTGTGTTAATAATATACTATGTTTATATGATAATGATAATAGTAAGTTATATTTCATAGTACGTAATACTACTT-----AATG--TTATTAGATACTGAGGATGCAGAGGTGATCTGAGTTGGTTATGGTCTAATGCTCTGA-ATAAAAAAGATACCAATAAAACATCACctaaaatagagagagagaaacacatgTTATGGATGTCTGATTCTTCTAAAAGAATTCTGCTTGGTATGTTT-------------CATAGAGAAGACAGGACAGTAGCCCATTGCTGCAGTCCAGACAAGAACGAGATTAATGAAAATCTAGACCAGGTGGTAGCCGTgggaattaaaaggaaa-aaaagatgcaaGAGGTATTTCAGAGA----CAATACCAATTGACAACTCTGAGGTGTGCAgtaagggagaaggaagagacatGTTAAATTAGAGACCTGGCCCCTCACTGAAGAAATGGGGAGGCTACTAACAAAACTAGAGATGG-CAAAGGACAGA------TGATGGGGTCCTGATGACTTTGGGTGTGGCACACTAC--------------GTGAAGATGTGTCACTAAACATCTCGAAGACAGCAGCAAGCAGCTGGAGAGGTGAGGTTATAAATAGGGGAGAAATAGGAGCTGGGAGATTGCAGCATGCTTCCAGAAGAGGCAGCTAAAGGCATGGGATGGTTTAAAATCACCAGCGCTAAGTTAGATTGAGAAACTCCATTAAGTGGGGATTCTGGGAA---ATAAGCATAATTGGTGAAAGTCTGACTAGAGTTTAGGCAAACAGTTAGACAGTTAGATATTGATTCCTTCATCATCAGCACTGCCCTAAGCCCTttagt--------ttaattaattttttacaaCTCTCCTTGGGAAGTAGATTTTGTT-TTAGTTCTATTTCATCAATAGGAAATTTAG-GGCTAAAAAGATTGCTAAGTTCAACCAGTTCTGAAGCAC--TAGAGTCAAGACTCAAACATTGAGATTTTAGCCTGG-GTCCCTGTCTC-------TGTCGCTGGGCAGCTAGGAagagtttttgtttctattttgttctttcaggAGTGGGTATTGAATCTGCGGCCTCAAATGTGCCGAGTAAATGCCAAAACACTCCACTATACCCCCAACCCAGAATAGATGATTTTTGAAAAGAGAGTTTGCTCTTATAAAACAAGATCCTTCCAGATTAAAGCCAGGTGGTTAGATTAGCAAAGTGGCTG------TCCATAAG--TGACGGTGACT-----ACAGG---GATAAAGTCCTATAGATG-AGAGAGAGGACTTCCTATGGAGCAAATAACTGTGTGCAACACAATTTTATTACACTTTGAA-AAGTGCTAAAAGATGTATGAGAGTATATAATCCTGGGTCCTCAACTCTTGTGTGGGAGATAGAGAGGATTGCTATCACGGAAGTCTATC-----TTGAGAAAGTGACATTTA

a score=36620
s chr3           149323827 598 + 160039680 TTTCAAATACAAGCTTCTAACTTGGAGCACAGCTAAGTTTATAGCCTCTGTCCACATTATCATTCAACTCTGTTATTGTCATGTAACCTCCTCTTTAGGAAAAACCAGTGGACCCTAAAATAAAATGATCGCAAACATGCAAATGAAGGTAGCTGAA-TTCTCGGGCGTTGGCAGTGTTACTTGAGTTTGAGATGGCCTCAGAAGGGACAATCATAATATTTTTCTGGCTGTCTTGTCTTGATTTATAATTTGAATCTCCATAAATGATAATAGAGAGGGCAATTATCAAAGAAATGGAAAGGGTAATTATCATTAAACTGAAAACACATCAAACATCCAACACGATGGATGTCTGAGCTAAAAACAGATTTTGTGGATCTTGCAACTGTTCCAGAGGAGTTTAATGGAAGCAACTTCGTCT-CCCACCTCCTCTAATTAGCCAGATGACTTTGGGTATATCCTCCCCACCCCCTTTCTTTCCCTTGGATGAGAACACAAGAGCTGTTCAT---------CTAAATAGAGACA-TGCTTAGGATCTGTGAATTGATGAGACATAAGCAATTG---TCTACTTAGTATAAAAAAGAATTTCCTTTATtctctct
s HiC_scaffold_1 135974577 607 + 233722169 TCTCAAATACAAGCT-ATAACTGGAATCAAAGCTAAATTTGTGTCTTCTGTCCACATTAtcattcagttttattattgtCATGCATCCTACACTTTAGGAAAA-TCATTGgaccttaaaataaaatgttcagaaacatgcaaatgaaaataGCTTAAGCTCTCAGACTTTGGCAGTGTTATTTGAGTTTGCAGTGGCCTCAGAAGGGACAATCATAATATTTTTCTGGCTGTCTTATCTTGATTTATAATTTGAATCTCCATAAATGATAATAGAGAGGGCAATTatcaaagaaatggaaagggcaattatcattaaattgaaaacacATCACACATCCAACAGGATGAATGACTGAGCTAAAAACAGATTTTGTGGATCTTGCAACTGTTCCAAACGAACTTAATCGAAGCGGCTCCATCTCCCCATCTCCTCCAATTAGGCA-ATGACTTTGGGTatattttccttgtttc---tctttccCTTGGGTGATAACACAATACCAGTTAATCTAATCTGCCTAAATGCTGACACTACTTAGGATATGTAAATTTATGAGATTAAACCAGTTGCTATTTGTCTGGtgtgaaaaaaaacttttttttttttttct

a score=90837
s chr3           149330006 3530 + 160039680 CAGGACGGTGGTGATGAGCTCTGTGTGATCTATCCATCAGACTCCAGCCCACCCTTAG----CCAAGGGAGAGGCTG-GAGGAGTTCTCTTACG-CACTGCGCCTCT----------GGGCATTTAGGTGTGCACTGGAGAACAGTTGGAACAACTGCCGTGGTCTCTTT-ACAGACGAGCAAGACCAAGGGAAAGAAAGGTTAACTGATAAATGTGCCTCTTAGGGGAATCTGACTCTCACCGTGTCAGA--------CTCATGTGCCACCTTAAAGT------------------CTATCCCTGATGCCTTCCCAGTGAGGTCACTGTCCCAGGCATCCTGGAATCTACGATGC----AGTTGCCGCCTAGTTCTGCCGTTCCACCATCAGTGCCCCGCCAGGGTGCTTTTCCACCACGGGACCTTGCACTGTCCTTGTCCCAAAGGCATTATGCTGTCTATGGCCTTTCAGTGGATTGGAATCTTAG---------GAGACTATGAAGGAGATTGACCCGCACTAATCTATAATCCTTTCATTGTGTTGTAAAATTATGAGAATTATTCAAGTGAAGTAGGAAATTG-ACTGCCATTTGATTAAATAAAGAGGAAGGAGAACAAAGTAATTTTCTTAAATTGAGGGCAAATAACTGTCACACACACAAAAAATCAAATTTCTTGGCATATAAATAGGTCACATCCTTTGTCTACCCGGCATATTTG--GGTGGGAAAGG-----------------CCTGGCTCTGGATACCCTCACCCAGAGCATCCTTCAGCCAGATGGACCTTCCTTAACACGGAAGGAGATC-----AAGC----CGCTCCCTGCGAGCTCAGCGGGCGTAGTTCCAGAG--------------GGTATTTACTGTAAGTTTAGCAATTTCCATTCTGAAGACCTTTTGTGCACGGCAGAGGGACAGCTCTCG---GCACAGAGGAAAAGATGGGTGGTGGATGAGGCGTGTCT----------------ACCCTCCCCAGGAAACCCCTGATAGTCTTGAAACTTCCCCTCCAGACTATTATACAATCCAGTGCCGTTTCCAAGCAGGAAGTATGATATTCCAAAGACAACTTGACCTCCCGATTGAAAATAGGACTGGGCAAGTAGGTGGGTGGGGGTGGACTGAGGAGAAGGGAGAAGAGTTCAGGCCTGGTGTAAGTCAACCAGATGC------------ACAGACACAAGCATGTAAATTTTGTTAGGAACACACGGTAACATTTCTCTTATGACAAAAATCCAGATTATTTATTCCCCT-TGGAGTAC---------ATGGGCGCGCCGAGTTTCT--------------AAATGTTCTGTTTGAAAAACTCAACATAACTACAGAAAGCAACCTTTAAACCAGAGCACCCTGTTTTGTTTCCTGCATCCTCACTGGG-TGGATCCTCTGATGCCTTGACAGCATCCAGCTTCCAGGAGTAAGCCTCAAGACTGGTTGCTGGG---GGCTTTTACCCACTGCTCCTCAGCTGCAGCCCTAATGGTCCCCCAGACCTGTAAGCCCACAATTGCTCTATTGTTTACTTCACAGTCTGAAAAGC----------------------CATGGTCCCCATAATCCTAACGGTCATGTTCCCTCAGCAGCAGGTCCCCATCTCTAGTTCCCAGAGGGGCTTCAAATGCAGGCAATAGATTAGCATCTCCATGGCTTGGTGCAATCTATGGCAAACCTATCTGCAAGGGCCCTTTGAAAAGTGTGGACAAGGCTAAATGATTTGCTGTGAGACAATTGTGTTCTTGAGGTGGAGAGAAATTAGGGATAACTTCTGAGGACTGAATGCACTGGCTGAGGGGTAATACAACGCTGGGGACCTCTTGGCCTCTCTCAGCGTTTTGTTCTGTTTCAAGGGATGGGGGAAGGGGACTTCCAATTGTGTCCCTGATGA-TCAGAACATTGCCTCCGTGAGAGCTCAAGAAAGACACATGCCACTACCAATTAACCATCAGCGGGGCAAGGTATTTATCCTTTCTGTCAGATTCTGTGGGAAGCGTGCCTTATTAGCATTGAAGCCCAAAGAAGTAACCCAGCCGTCCACATTTGCTTACCCT----CCCAGGAAAAGCAGAC------AAGAATTGTTGGTTT--GCAAACATATATAGGGAGATAAATAATAAATAAACACCTCTTGTTCTTCCTGGTCTCTACTTGAATGCCCAAATTAAAAATCACCCAATGAAATCCTATTTCC-------TGCCTGGCTCTCTCTGTTTTTACATTCACAGGAGCTTTT--ATTTGAAATCAGCTCCATCATGGGGCCGGCTGCTTTGAGTGATTGGGGGCTGCCAATTCCCCGGTTAACCATCTCTGACCCTTCCCTCTGCACTGCACTTCGAGTCAGAGTGGCTGGCCTGGGAGTGAGAGAGTCTCTAGGGCCCATGGTTGTGGCCCCATCAGAAGACACTTCTTGCATGCTTTCAGCTGG-TTCCTGGCATGTATCAGAGGGATCTGTGGTGAGCGGCAACAAGGGACTCACTTTTCATCCACTCAAGTTGTGGTTAGGCTTAGTGGCATTTCTTTCTTATCTCAGCCACTAGGAGTCAATCCCCCTGAAAATACATAGTtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcctctcctctcttctttctTTTGttccttc---------------------cttctttcctacctccctcctttccccccttcctccctctttccttcttttcttTTCTTCTCCCTGAAAGAGATGGCAGAACTCTCAGCCCTCCCTCTTCACCCTTTAGATACAATCACAGAATTATT-GTGTATATTCTTTAGGTCATTTGGGGACAAACAGGCAAGGG----------------------------CCAAGTTAAATTATATGTTTTTCTATTAAAGGTCTTAGAGGAAGCTGCTTTCCTGTAACTAAACTGCTGATGTACCTCTTCATTAAAGAATCAGGGATTAAATAATACTGCTATCATTTTCATATTGA---AAAACAAAAACAGAACAAAAAAC--------ACAAGCCAAAGT-----------------TACAACGGGAAGATTTAGAGTATAATGT---TAGCGTTTTGAAAATGTACTAGGA-----AGATATTAAGTACCAGCATTGTTAAGATACAAAGAAC------------AGGAATTGGTAAAGA-----------------------------TGCCACTTGGTACTC--GTCTTAAGCCAGCATCTAAACGGAGCTTAGCATTTCAGGAATCAGTT----------------------------------------------------------------------TGGAAATCGGAAGAGAACGGTATA---------------AGGTTGCCACCATCTTACATTGCCCAGTCAGGGTATGTTAGAGACGAG----AGCTGAAGCACACCAGCAA-----GATAGAAGAAGGGGGTCGTCATTCCTGA-AGTGAGGATGTGTTCACTGGAGTAGGTAGGGCGGAGGG---AGGGAAACCATGGTCTCTGAATGCCAGAAAGCTTTGTCGGGAATGAGGAATT-GTGACTCCCACGCCA-CTGGCCTCGGAGGAGGGGGAGGGGGTTTCAGCAGCAGCAGCTTCCTGAAACTCGTCAAGCCCCTTCCCACCTTACAGCATTTGCACCCCAGC--GTCTGACTGGAAATGTGTGTCCTGGGACCCCGAAGGAGCTCTCTGCTCCACTCTAACCACAGCGCTGAAA---------CCCATTCCCAGGCTCTCAGCcctcccttcccatgtc-tgtgcctctccacccctcctgtccc----------tttcttttcttcttctctttc
s HiC_scaffold_1 135978861 3723 + 233722169 CAGAATGATGGC--------CTGTGAGAACAATCCAACAGAGCCCAGTTGGCCGgaagaaaactgagagaaaaattgCTAATAATTCTTTTAaggcactaatttttttttttttggtgggggttttgctatgcagtgaTTAATAACTAGAATAACTGTAATCCCccttttcacagatgagaaaagcCAAGCAAAAGACAGGTTTAATAAAATGCTTGCCAAATGATGGAACGGGATTCCAACCCTGCTGGAATCTTTTTTTCAAGCAGCACTTTTAAATTCTACAGCACATGTGCCACCAATCCCGATACCTACT-----AGCTAACATTCCAATTTCTCCACTGAATCACAATGGCTAGAATTCTGGCCCATTGCTGTTGGAATAAGATCA----CCCAGTAAGGTGCTTTCTCAGCAAAGGACCTAGTGGTGTCCTTGGCCTGGAAGTATTATGATGTCTATGACCTTTT-GTGGATTGGAATCTTAGAGAAATAAGGAGGCTATGGAGGAGATTGACCTGCACTAATCTATAATCCTTTCATTGTGTTGTAAAATTATGAGAATTATTCAAGTGAAATAGGAAATTGCACTGAATtttgattaaataaaagaaaaggagtgCAAAGTAATTTTCTTAAATCGAGGGCAAATAATTGTCACA--------AAATCAAATTTCTTGGCACACAAATATGTGACATCTCTCTTCTCATACACAGAGTTGCTGCTGGGACAGGGAAGGGGCAGCCGGATGTCTGTAGCCTGATAGCATTAATCAGCTGCTCCCTGAGTCAGACATGCCTTCCTCAGTGAGGGAGGACATCCCAGAAAGCACGATGCGCCCGGCAAGCCCAGGGCACGCATTTGCAAAGATGTTTTTCCTTATGATATTTACAG----------AGTTTGCATCCTGAAGACGTTGTGTATATAACAATAGGACAGCTCATGATAGCTCAAGGGAAAACTTTGCAGATG--TGACGCATCCCTCACACCCTGGCCCTCGAATCTTCTAAGGAAACTCCTGGTACTCTTGAAACTTTCCTGTCAGACTATTATACAATCCAGTGGTTTTCCCAAGCAGGAAATATGCTGTTCCAAAGACAACTTGACCTCCTGTTTGGAAATTGGCCAGGGTGAGAAGG---------GTAGGTGGCGGGGAAGGG-------------CTAGATCTAAGTATACTTAATTCGTACACCCAATCACAAACACAAACAAGTTAATTTTGTTAAGAATGCAGAATAACATTTCACTTAAGACAAAATTCCCAATTATTTATTCTCCTCTGGAGTACTTCTTATGCATCCttgagctgctttttttttttttaaagttcaagtgttgcata-aaaaaaatcaacataattaCAGAAAGCAGCCCTTAAACAAGAATATCCTGTTTTGTTTCCTGTGTACTCACTGGGGTGGCTCATCTGAATCCCTGACAACATCCAGCTTCAAGAAGAAAACATCAAGACTGCTTGCTGATCCTGGTTTTTCCATACAGCTCCTCAGCAGTGGGGCTGTTGGCTCC---AATGTGTAAGCTGACAATCGCTCTTTTGTTTACTTCGCAGTCAGAAAAGCAATGCTGCTTTTCTTCACTATGTATGGGCTCCATAATCCTAGCAGTCCTGTTCACGCAGCAGTAAGCCCACATATATGTTTCCCAGAGGAATTTCAAATACAGGAGATAGATTAGCATCTCTGTGGCTTTATGCAATCTGTGACGGATTCGGCagcaataaacattttaaa-gtgtGGTCAGTACTAAACTATTTGCTGAAGCCCGATTGTGTTCCTGAGGTAGAGAAAAATTAGCAATAACTTTCGGGTAGTAAATACGTTGGCTGAGGGAGCATACAACACCCCAAACCTCTTG--CCCTCTCCGCATTTCATTCtgtttaaaagacagaaaaaaag-----cccAATTGTGTGC-TGATGAATTAGAAAA----CTTCATGAACATTCAAGAAATACACATGCCACTACAAATTAACCATTAGCGGGGCAAGGTATTCATCCTTTCTGTCAGATTCTGTGGGAAGTATGCCTTATTAGCATTGAAGCCCAAAGACATAATATATCAGTCTACATTCACTGAtcctaccccccaaaaaaagaaaaatagaagaagaacTGGCAATCTCAGTCCAGGGAAGTGGGGGAATAAATAG------------TCTTTTTCTTCCC-ATCCCCATTTCGACCCTAAAATTGAAAATCATCAAATGAAATCCTATTTCCTCTTTGTTGCCAGTTTGTCTCCGTGTTTGCAGTGGAATgcagttttgcattttaaatcagtTCCATCATCA-------CCCTGCAAGTGATC--ACACTGCTAATTCTCT------CCCTCtccagtcccgcc--ccgcccccagcTTTGAATGTGAATGG--GACCCGAAGGT-------TCTCCAGGGgccacctctgtggccctgg-agcAGCAGCCTGCCTCCTGCGTTCAGCTGGTTTCCTGGCATGCTTCATGGGGATTTGTGGTGAGTGGCCGCTCTGGACTCACTTTTCATTCTGTCAAGTTGTGGTTAGGCTTAGTGGGGTTTCTTTGTTATACTGGCCACTAGTAGTCAACCCCCTTGCAAATAtctagttttctcttt-----------------------------------------------------------------------------------ttcctttgaagaaaaaggaaaaaaaaaagtttctcccCACTCCCCACCTTAACCCTAAAACACAAACACCA-------------AATAACCCAAACACAAACACCAAAACCCTCA---------CCTTACCC-CTAAACACAAACACCAAATAAGCAGTGCA-ATCCCTTCAAAAACTTGGTGGTAGGAAGACAAAAGAGGGATCCTTCCAGATGTTCTCCACAGCCCAATTTAAGTTTGATGTCAGACTACAAAAGGTCTT--GGGAGGCCCCCATGCT---------CCACTGACCTgctgttttattaaaaaatcatggG-TACATTTTACTACCATT-TTTccacattaaaacaaaataaaataagtccaaaaaattaaaaagaaaaagccaaaataaaataagtcagacatatcAAATGAGAAGTTTCGGAACACGGCATTTCTGGTTCTTTCAGAACAAACCTGGAAAATGAAATAGTGCGTGCCAAAattaatagaacaaaacaaacacataaattCTGAGGAATTGGTAAAAATGGGGTATACCCTTGGACATGGAGAGTTTTGGCAGTTGGTGCATAGGTCTTTAGCCAGCG-CTTAACGGAGTTT--CATTTCATGAATCAATtgaggggggggggagagaaagagagagagagaaagagagagagagacagagagagagacagagagagaggaggaaaaaagaaaaagaaagagagagagagcaagcaatGTAGGCTGCCAAAATTTTATATTGCCAAGTTaggttgtttaaaaaaagaacaacaacaaaagc-caccAACAACTAGTAATGCTGAGAGCTTGCAGCATGTCCTAAGAGAAAGGATGTGTTTACATCAG-AGGCGGTGCAGGAGGTGTAGGGAAGCTGTAATCTCAGAGTA-GAGACTGCCTTTTCCAGAATGAGGAGCTAGTAACTGCTTCACCACCCTGCCACAAAGGC-----------CTCCAGACAGAGCCAGTTCCTGAAACACGCCAAGCCCCTTCCCACCTTCC-----CTGCGCCCCCGCCACACTGACTGGAAATCTATTTCCCAGGAGCCCCCA-GAGCTCTCCACTCAAATCTAACCACA-CACGGGAGGGGGGCTTCTGCAGTGTGGGTCTACAAGCCCCCTCTCCCCAGCCCAAGTGCCCACAAACCCTCCCCTTCCCCACTTGCAGGTCTCTTGCCTTATTTTTCTTC

a score=4136
s chr3           149334868 138 + 160039680 ATAAAGAAGTGAGAACGGACAAAAGAAAAACGATCAGATGCTTG-GACAGAGAGGGGGAAGGCCAGCAAGGCTGGGCCGGGGAGATGCTGCTTCATCTTTCTGTGACACATCCCTTCCTCCCAGGTATGGGGCAGAACC
s HiC_scaffold_1 210485339 137 + 233722169 ATATAGAAATATGATTAGACAAGAAAGGTTTGATGAAATAATAGTGACAGAA--GGAGAAACCCAGCAAGGCCTGCCTGTCCAGATTCTTTCTGATCCATCTGGGCAGCATTCTTTCTTCCCAAATGTGGGGCAGAGCC

a score=61249
s chr3           149338240 2304 + 160039680 ttggttttcatctccaccacgacaacaaaTAAACAAACAAGGATCCCCATGTCCAAACAGCTAATTCTAG---------------------CATCGCTGAACTGTTGCTACTGCTGTGACACTGAACATTTGGTAATAGGTGAACATAA----------GGTCACTGGGCTGACTTTTATGATGGTGGATAA--AGAATAAAATATTAAACAACTTAAGAAAA-TCAGGAGACTTAGATTTTTCAACCATTATCCACTCAAAGGCAAATCTGTCTTATTTTAGTATCTCTAATCAAGAAGATTAAAATCAGACGGAAAGCTCAATCCTTTTGATATTTGGAATAAAAA-TGTACATTTACATTTAGAA-CTACTGGGACACAATGAAAGATGTAGTTATTTGAGGTAAAAGTGGATTGTGGATAGAGTGGCCAGTGAAAATGCTTCTTAAGTATGCATGTATGACAAAAACCT-CCAGACACGAGGAAGTCTCAATTGGCTTTTGAGCCACACTGTGGTTTATTGTAT--TTTACATCAGTTCTAAGAAGATACCCCATGCCATTGTGTCTATTGGAAAATCATTATGGTGCAATTAAAAGCAATGCTGTTTCACAGATG-CACGTGAGCCCCAGTCTCTGTGACTCACGCCTG-GCCACTTCCTTGAGCCTCTTGTGACTA-------TGTGCTCTCATGATGGTTGAGAGACCCAGCTGTCAAGAAAACACCCAACAGATGGCAGTTGCACGG-------ATGTGTCACCCTTCTTGGGAGTCC--CTAACACCGGAGCTGGGGACCTCCATCAGTGCTGGTGTGCAAATGACTCCTTTCAAGTAGCAGTGGACTGGAATGTTCAGTGACAAAGTTAATCTCCCTCCAGAAGTGAAG-GAAATTGAATTGCCCTT-ATGAAATGAAGTGTACAATACAATGCT----TATATTGTCCCTTTGAAAACTTTTACAT----TCTTATAGATAAGAGTGTCAGAC-TAAGAGGAAG-GTGACATATTAGACAATATACTCCTTTCTCTTAAGGATGTGAGCAAAGCTATACTGGTCCTCTTTCTCA-TTGTGTGAAGCTCTATAAAGATCGGTTTTATA-----------TTTCCTTTAAAAAAAAAAAAAGAGCAATTTAACCTTGGCCTTGGTAATGACGTGACTTGTTGAATGACATGGTCTGTAATGAAATTACCCTAAGTGGTTTGAGAATTAATTAAGTGGTTTCATTTTACATTGTAGCTGGCATTTTAGCACAAAACACTTAAGCCTCCCTCTTCATTACTGTCCCTGTACATATATGTGTGCGACATTACGTGAAGAGGAGACCTACAGATGGGGATTGCGAAAAGTGTGCTAATCACTGT---------GGGATTGGGCCTCATTACTCATTACTCAGAATGTGAAGTGTAGTTGGTTTCTGACTCATGTTCCTTCCTGTCAGTCACACAAAGGTTTCAGGTGGTAGAGCCTTAGT------TCTGTCTAGAGAACATTCTGGTCTGTCTGAG---TATGTAATTAAATGG--CAGGACAATCTTGAATAATAGGTTTAGGCCACCCTATGTCCTTCAAAAATGTCCTGCATGCACCTGCCTGCTATCGCAATC-CCCTTCCAAGGCCTGTAAAAGGTATT--GGCTTTCTTTGCTTTGGTCCAAGTATAAATG--------TCAAATCTTCCAAGCAGGGTGTGTGAGGGTTACTATGTCCTTTAGGGTTAAATTTAAATAGGTTAAAATTGTTGGTTTTCCTTTATGATGTTATCAAAATTATGTCCCGAGACATATATTTATTCTAAATCGTGACCTAAGATTTGTATTTATTCTA-------AAACTGTGACATTAG-TATTTGTCTAGTCATGTCgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaCGACACGTGCTCTATGTGCTTTCTGGTAATGTAATTGCATCTTGGCTTTACGGACTCCTCTCTAAGGATTTGTCAGTGCACCAAACAC-CTGAAGGACAAGCTAGAAAAAGAAGCACACCTCCCTAGTAAACAAACAAGAGAGCCAGGGCAGAGCACAGCCTGGCA----------TAAATGACATAGTATCTATTTGGAATACATTGTATATGTCTGAG-ACAA----AGGATTCCACTAATTCGAAGAGCTTAGCACATGTCAAGCATTGTGGGAAGTCCTCTACAGACACCATTAGATGGTATTTTAGCCACATGTGAGATGGCTGCACATCCACTAGACCAGTACACTTAC----AACGCTGTCAAGGCTGATCATATGCCCAAGCCAACTAGGCCGGTCATCTTCCAAACTCCTGCATTTTTTTTCCAGAAGAATTAAGTAATTTCTTCCCTATAAAAC
s HiC_scaffold_1 135986566 2285 + 233722169 TTTATCTTAATTTTTCCcatga--------aaaaaactaaggatttCAAAGTCTAAGCAGCAAATTTCAGTGTCTGACCAGGCAACTCCACCATCTCAATGTCCTTGGAACAGCTGtgtcagagaattttttttta-aaacaaacattaatggtACAGGGGTAATTGGATAGACTTTTACAGTAAAGcataacaataaaaaaatgtctaatagtataaaaaaaatcaaaagagtgAGAATTAG-GACCATTACCCACCTAATGATGAATTTGTCATATTTTGGGATTGTATATGATGGAGactaaaaataaatccaaagctTCACATCtttgatatttgaaataaaaCCTGCGCATTTACGTTTAAAAATTGCTCAGGCACAATGGTATAGGCGGTTATTTCTGGCGAAAGTGGATTGTGGACGGAGTAGCTGATGAAAACTCT-CTTAAGTATTCATGTAGGACAAAACCCTTCCTGGCCCTAAGAAGTCTCAATTGGCTTTTCAGCTGCACTGTGGTTTATTGTGCGCTTTAAATCAGCCCTAAGACGACACTCCATACCATTGTGTCTGTTAGAAAATCATTATGGTGCAATTAAAAGCACTGGTGGTTCACAGGGAACACGAAATTTTC---CTCCATGTCTGACGGCTGAGCCTCTCCTCCGTGGCTCTCGTGATTAGTGATTATCCGCACTTGTGGTGGTCAAGAGATACAGCTGTCGGGAAAACACTCAACAGATGGCACTTGCGGGGTGGGGGGATGTGTCATTCCTCTTGGTACACTGTCTGACACCCGAGCTTGGGACTTCCATAAATGCTGGTGGACAAGTGATTCCTTTCAGGTCACATCGGACTGGAATGTTCGGTGACAAAATTAATCTTCCTCCAGAAATGAGGAGAAATTGAAGTGCCCTTAATGAAGCGAAGTGTGCAGTATAATGCTAAGATGTATTGTGccttggaatcttttttttttagctattcCAGATAAGAATGACTAATGTGAGAGAAAGCCTGATGGGTTGGGAGATAGATTACTTCTTCCTCAGGATGAGGTTGGGAAGAAATTAGtcagttctttcatttttgtaaagCTCTTTTAAGACTGGCTTTAGATtcgttagatttttttttt----------aaagagcagtttAACCTTGGTTTCAGTAATAACATGACTTGTTGAATGACATGGTCTGTAATAAAATTAGCCTCAGTAACTTGAGCATTAATTAAATGGTTTCATTGAACACTGT-GCTGGCATTCGAACATGAAACATTTAATCCTCTGTCTTCATTATGTTTacaacatgtatatgtgtgtgggaTTATTTGGGGAAGAAGAC-ACAGGGAGGAAT-----------------TCACTGTCAAAGATGATGAACAAAGCCCGGAAACACAGCGTTGAGAATCTGAGTTACAGACG----CTGGGACGGACTGGTT--TGTC-GCCACAAATACG-CTCAGCTGG--AACCTCCAGTGAGTAGTCTGTCTAGTGGACATTCTGGGCTGTTTGGGGTCTCTGTGTTTTAACAGAATAGGTCAGTCTGGACTCATAGGTTCAGG---TCCTATATTC-CAGAAAGTGTCCTG---GGCCTTGCCTGCCAACTGAATCACTCCTCCAGTGTCACTAAGTAGAATTTAGGCATTTCTAG-TTTGACCTGAATGTAAGTGCAGGCctataaagatttaaaagcaGGCAATGTGGGAATAACTGTGTCCCACAGGGTTAAGTTTAATTTTGTCAAAATCGTTGTCTTTCCTTTCTCATGTTAGC-AAATCATGTCctgcagttca--------------------ctaagatttatATTTCCTCTACAACATGACACTCTGACATTTTCTGTTTGTCTACTCATGTCCCAGAAGAGGTA----------------------------------------------------------ACCACATGCCACATATATGCTTTCTGTTAGTATATTTGCAAGTTAATCTCACCAGTGGGTCTTTGAAAGATTTTCAGTG-GtaaaacacacagaaagagaagcGGTAAAAAGGAG----CCTTTCTGATAAACACACACAGGGGGCAGGGACGGGGAAACAGAGGTAGGAGACATGGTAAACAGTGTGGCAAAGATTTAAAATGCATGCCATGTATTTGAGAACAAAAGCAAGATTTCACTTATTCTAAGGGCTTGATATACGCCAGGAAGTCCACCAAGTATGCTAGAAGCATTATTAGAT----TCTTGTACATATGTGAGTTAA-GACTTGTTCTTT---TCAGTATACTGATGAAAAATGGAGCTATAGCTGATAATTTGCCCAATCCATACAAGACA---ATGTTTCAGATTCTTGTACTTTCTTACAAG-AGAAT--AGCTGCTTCTTTCCTAAATAAC

a score=44599
s chr3           149341784 1271 + 160039680 ATGCTCTTTGGTCCCCTCTGTGTCTTGTATTGATGCTGGTTCAGGACAATGCTG--------------ACACTTACGT-GTCAGGACATGGGACCTTCAGT----CTACACATCACAGAAGCACAGACGGCCGAGATGAAATAAAGAAGACGAACCCGT--------TTGGGGGTCAGGCAG-TGTAGACCTGAGCCCTGCAGAGAAGGCCCCTGAAAAGCTGTGCTAGTG-----TGCCACCATTGCGCTGCCTAGTGGAAGCAGG--TGACAGATTTACTTTGTGGAAGAGTCCTGGAAAC--AGTATGAGGCGTCATGACTGGACGGCCTCTGTTCTGAAT-CGGTATAAACCTCATCTGCAGTTAAGACATTCACATCTGCCCAGG----GGGTGGATCAGTCATAAAAGGAAGTGGGCAGACTGTAGGCTTTGCAATGAATCTGAGGTATTAGGTGGACACAATTTAAATGTTTTTTTTTTCCCTTTTCCTGAAGAATAAACACATAATGGGAGAAAAATGAGGCTCTGAAGGGATTACATATCCCTAAATATTTTATGACCATGTTAGATGCAACGCAGTGTCTTTTGGCTTTATTTGAGAGGGGGAGTATTTACTCACAATTATTTACTTGCCAACTACAAACCCAGCGGCCACTCTCTGAGGTTTCCCCGCGTGGTTTCCCTGTTGGCCGCTCTGTCCTGGCGGGGCTATCTGCATGTAAAGCCCAAGGTCCTTGAGTGAAAGAAGACC----------------------AAGTATACCCCG-TGCTTTTACCCAGCTGATATTTAATGATTTACCATTTAATATAGTTCATCTTCCATAGCCTGGAGTTCAAACAGAGGCAGCTGCTATTAGGCATGCAATAATATTGAACTTCCTACCCATGACCTATGAGAATGTCTTCCTTCGCTTTAGCTACCGAA-CCATCTGGCCTTTCCCCTATGCCTGGCAACAGACGGAGTGGCACTGTTTACTTCCCATCAATGCAATCTGGGACAGAATGTATAATTATGCTAGCAGAAGATCTTCAAATCAAAATTCCTTGTGTTAGCAGCGATCTGCAGCTCAGGAGGACAAAACAATACACTTTAGCTCATTATCAAAAGAACAGTGAGAAC-CTCAGGAAACATA-GAAAATGCCCGCTGAGCTGAAATCGATTCAAAGGGTAGAGGTGTCCCTGG-TTACAATCT-GCAGGGAAACTTATTCTCTTATAACTTCTATTTGCTTTCTTTAGTGTGGAAGTTT-------AGGCACTTGAAAAGCTTCCCTTCTCATAGCTCTGGAAGATAT-TTGACAGACACAGAACTAGAGA
s HiC_scaffold_1 135989485 1326 + 233722169 ATGCTCTGTGATTACCACTGTTTCTGGCCATGGTATTGGTCCAACATGACACTGTGATGACAGCTCAAGCACTTATGGAGGCAAGACAAG---CCCACAGTGGATCCAGGTGCCATGAAAGCACAcgcaacagagagaaagaaaagatcctTGTCTTATGGTAGCTACTTGTGATCATACTGCTATAAATCGATATCATGCTGGGAGGAGAATTTTATAGCTCTA--AATggcatttgaaattattttgctgCCCAACTGAAAAAGACATGAGAGGTCTACTTTCCT-AACCGTCCAGAAATCCTACCTTGGGCATCCATTATGGTGcgattttaattttgaattcagTATGAGCTTTATTTCCAGTTATGATGTTCACATCCCCCTAAGTAAGAAGAGGATCAATAGTAAAAGGAAACCAGCAAATTGTAGGCTTTGCAATAAATCTAAGGTATTAGGTAAACATAACTTAAACAGttgttttt---cttctcctgaaaaataaacacatga-gagaaaaaaatgaggctCTAAAGGGATTATGCATTCCTCAATATTTTATAGCTGTGTTAAATGCAAT--ATTGTGCTGTAGTTCCACT------GCCGAATATTTGTTGATGATCATTTACTCACCAACTGCAAACCCAAAAGATGCTATTTGAGGTTTTTT-GTGTGGTTTTCATcttggctcttctgtcagtgttcCACTGCATGATTGTAAAGAGCAAC-TCCTTGCATGTGGGGAGACAGATGCAGGTGATTTAAGCAGGGAAATGCACCACAATGCTTTTACTCAGCTGATATTTAATGATTTACCATTTAATGTAGTTCGTCTTTCATAACCCTGAGTTCAAACAGAAGCAGCTGCTATTAGGGATGCGAAAATATTGAACTTCCCACCAAAGACCTGCGAGAGCAACTTGCATTGCTTTAGCTACTGGACCCATCTGGCCTTTCCCCTAGGCATGACAACCGGGGGAGAGAAGCGGTTTACTTTCCCTGGATGGAGTCTTGGACCGAATGTATAA--ACGCTAGATAAAGATTTTCAAATCAAAACTCCTTGTGTTAACATCACCGTGTGACTTTGGAGGACAAAATGATGTGTTTTGTCTCATTATCCAAAGAATGCTGAGAAAGCTCAGGAAGCATATGGAAAATTGTACTGAGCTGAAATCAATTCAAAGGGTAGAGGTGTCCTTAGTTTCCAATCTAGAAGACAAAcacattttcttataattttgattttcttttattagtatgAGAGTGTTCTGGTAAAGTATTTGAAAAGCTTTCTCTCTT-TAGTTTTAGAAAATATCTTGACAGATATAGAGATAAAGA

a score=23070
s chr3           149344682 718 + 160039680 TGTGTACCTGGACTCTCAGCTTCATCTCTACTTGAGGAGAAGCCTTCTAAGT-GCTTGTTTATTTATAGTAACTAGCAGATTTTT----GGGCAAATGAATGTGTTGGTATGGAGAACTGAGCCAAAGTGATCATGGTTCTATTAAAAACCCCACGATCAAAGCGCACATTCCATTTTAACACACATCTGTCCGCGTGAGATGCTGCAAATTGAAGATCAAGTGTTCATGCATCAGGCTCAACAACTTAGAAAATTTGATCTGGGAATCCTTCCCGCTCTCCTTCCTTAAGTCCAAACACTGACAGGTATGTTATATGATTTTTATTCCCCTGTTTGCTCAGTTCTAAGATTTATAGGAGCTCTAATTTGAAGCATGGCAGAAATGTCCCCATACAGACAGCAGGGGTTTTCCCCACAAAATTTTATTATAATTGTTTCCAGGCCCAAGGGCAAATTATTATAGGGAAGCATATATTTAAAAATAATGCTTGCGTTCTTC--TCTCTTTTAAAACTTTGAAAGTGAGTTCTGTTGCCTTGGTTTATTTTTCAGAGGGCAGATGCGCTGGTTTGTTGTCTTCTGAGCAGCTTCCGCACATGGATGTGGTAGTTGTTCTTAGAGTCCATGTTTTCACAAACAGCCAGAAGCCAA----TCCAATCTC---AGCTACACCATT-GGATGAATGCTG-TAGAGCACTCAAAGAAAGTGAACGTTTCACGGTTCACTGT
s HiC_scaffold_1 135991778 705 + 233722169 TGGATTCCTGGATTCTTAGCTTCATTATTATCTCCTGAGAAAACTTCCcaatcatttgtttgtttgtagcaCTTAACAGATCTCCCTGCAGGGAAATGGATATGTGAGTGTGAAGAATTGGGTCCAAATTATCATGATTT------------CATGACTGAAGTACACAGTTCATTTTCAT-------TGTCTATATAATCAGTTAAACACTGAAAATCAAGAATTAATTTATCAACTTCAACAAGGTAGAAAGTAAAATTTGG-AATGTTACCCAAATTTATTCTCTTGGTGTAAATACATCCgggtattttatataatttttatttccctgtTTGCTCAATTTCAAGATTTATAGGAGTTCTAATTTGAAGCATGGCACAAATGCCGCCACAGTGT-----GGGGCTTCCCCCACAAAATTTTATGATAATTGTTTCCAGGCCCCAGGGCATATTATGATGGGGAAGTGTATATTTTAAggtactgttt-cattttttaaaattttttgaaattttgaaagtaaa-aatgtcccttttatttattttt-agaaggcAGATATTCTGGTTCAATTAATTTTGATTAGCCCTagtgtgtat-tttttcagttagcattgaaaattatgttttcacAAATACCCAGAGAAAAAGATTTGCTGTTTAGTGAGCTGGATTATTCTGGTGAATGTGGTTATTGTGTTCAAAGAAAGTGAATTTTCCACAATTGACTGT

a score=76185
s chr3           149346150 4080 + 160039680 [encoded data, 4697 characters]
s HiC_scaffold_1 135992840 4399 + 233722169 [encoded data, 4697 characters]

a score=55272
s chr3           149353653 2607 + 160039680 GGTAATGAAGATTAT--TGATAACAACACAATTGTCCTTCGAGGACATGTCACAG----GCCATATATAGTGGGGTTCACTATACCCAACAACCAGAGGCTTCCTCCTCCATAAAACTTAAAA----------CCTGTACAAGATGGAGAAAAATACCGGAAAGAATG-CAGATGCCCTGCACTAAAGCTTT-TTTTGCTACCTTCAGATTGGGGCCTTTTAGAAAGAAACTCAATGCCCGTACTTGTCATGCGCCAGCGTGCAAACTGCACCTGTGTGTTTCTCACGG-GCTGTTCTGAACATCAACTATGGTGGTGTGCGTATGACTAGATTCACTTGAAGTTCTGTTCCCTCGTCCAAGAAAACCTTTAAGAGGTGAAGAGAATGAATAAAGGCTAATCTAAGCATTCTGAGGAAAATATCTTTCCTAAAATACACTCCCCAGTTTGAGGGATCACATATAAATAGTC----------GTGCCAGCTCTGGAAAACACTCTTGAATGTTACTGCTGACTTTGATAGCCGGCCTTGGCATCTCTGCCAGAACTTGCTCTCTG-TTGCGGTTATTCTTAGCATACCCTTGGATAATGCTGTAGGTTAAATGTGGATGGCTCCTCCTATCACGCTGGAGGCAGTAATAATGGCAACTAAAGCAGTCATCTGGAGGATGAGCTAAGCATGAATGTCTTCTAACATGAAGCCTCTTTCTAATGTGTACATAAAAGGtatatgatatatatatatatatatcatataacacacacatgtacacatataacgatatgtgaggatatattaatatatattatataatatgtgtgcacacacatctctctatatatctcatatatatgatatatatatatatatatcatatatatatCCTCACATATAATCTTTAGAGTAACCCATGAGAAAATAGCATAATAGTAACTGAGTAAA-ACGCATTGAACATACTAACCTC-------TTTGCTGGGTATAGATCACATGTACTATTAAAGATTGCTAATCTTGTATAAGATAGAAATCCAAACTAAaaaaaaacaaccaaccaaccaaaacaaaaaacaaacaaacaaacaaacaaacaaaacaaaaaaccaaacCTCTAAACTATTAGGAAAACAGATATTGTACCAGATCTTTTTC--TGGAATTGCT---------TTTTAA--TTGCAAATATTGTTTTATATCTCTGAAGCCAGTCGATTCGAACAGTATATGCAGACCAGCTTTAAATAAATTGTGCAGAGCTCCATGCTG---------TTAAAGTCTTTGGTCTCTCCAACATTTTTGCTGCGTCTCCCTGACATACCAATTACTTAATACTGCTACATCTAAAGCCAGGGTTCGTTAGTCTGCCTGAAGGAACACAGAGGTTCCAAGCTGGCATAGCTTCtattttattttttttttttttCCTTGCCTGCAACCTGATTTCTTCTGGGTCTGACCTAATTCCTTTGATGCCC-GGGGCTCGGAGGCCAGGGCTAATCTG-------GAGGAAAGGTGAGACAACTGATAGAAAGGCAAAGGAAGGAGAGAGCTGCACCCGGGAGCTGTGCTCTTCAAAGCCAAAACCAGCACCGGCGAAGCAAATC--GCCCAAGTTCTACCCTAGTTTGTAGAGAGGAAC------TCGACGCAGTGTTTATAACACAGGTCTCTCCTCTATCTTGGTTCTATTAGGTAGCTAGT-CAGCACTTTACAGCTAGGGCAAAGTGTCGTGGGGGGATGCAGGGTTGGGGCACGATAGCAAACTGCTAATTGGTAGCATGGCACCAGGAAACTCAAAGTAAGG------AAAAAATGTCTGCTT---AGAAAGAGGCCAGCAGCAGCACTGCGGAAGCCATCATCATGGAAAAGGGTT------CCACAGAAGGTCACGTGATCCTCTCAGCTCTGTTCCTAGACTTTGGAACGTGCCGTGATTCAGGCTTTCCTAGACCTGTCCATTTATTTATTGTACCTCTGGGTCTGTTCTCAGGAGCTGTTTCCCGTTGCGAGGCAGATTCTTCTTACCGCTCAAATGCGCTTCAGACATCTTGTAGTCATTAAAGCGCCTAAGGC-AGGGCCAAGGGGGCAGATTTTCCTAGCGTCTTCGCTCATCTTGATTTTGGATTACTTTGAGTCT-TGAAAAGCAGGAAAATGACATTGTAAGCAGTGACCCCCCTTGCTTACAAACGGCACGTTTCTTTGTTTGAAACGTGAAGAAGTCATAAT----TTTTCATGGATCTACAGAAAAGGGGTGGCGGTGGTGTCCACTTGTGACCTGAAGAATGAGGGCTTACAACGCCATCCTGACACCTGCGACCATCAGAAGAGATAGATGCTCCATCTAAAGCAAGGAGATTCTCAGTGGCG-----GGATC----------------------------------CATCCTCAGCACAGTGCC-----------------CTGCCTCACTACCAGGCGGTTGTCTTAT---------------------------------------------------------------------ACTCCACCAACGTTCACAGTCATACAGTGCTTGGCTTCCCAACTCGGTATTCACGCGGCATCCAAGTTCATGTTTCCTAACCGTATGGACAGCTTGCGGACTCTAAGCAGACAGGAGCCACTGAATTTTGGAGCTTTCACTCTGG-CCTGCCTTGGGTGCCTAATTGATGCAGCTTCGTGTTTCAGGATATAGATTCGGATTCGAAAACCTTATCTTAGGC-ATTTTTTAAGAC---CAATTTATTCAT
s HiC_scaffold_1 135999895 2480 + 233722169 GACAGTGACAATAATGATGATATTATCACTATTACCTTTTGACAGGATGTCTGAGAACTGTCACGAATAGAGATGT--ATTACATTTGGAAGCCAGACaactaatttttcaaaaaaaaaaaaaattaaaccagttTGCATGAGACAGA-AAGGACACTAGAAATTCTTTCACGTGCTCTGAgttcaaattctgtttttctatctTTCCACTGAGAGACCTTTACGAGTTGCTCGGTGCTTCTGCT-ATGGTTCTTTAGCACACGTGGGGCTATGGGATCTGCCTGAAGGCGCTGCTGAGAGGATTCAGTGAGATGGCTTG--GATGACTGGAC-CACCCGAAGCCTTGTCTTGTCATGCAGTAAAGCCTTGAACATGCTAAGAAACTACAGAATGGCTAATCTAAGCGTGGTGA--AAAATATCTTTCCCGAAATACTTGCGATAGTTTGAGAGATCACATATAAATATTCTCATCTGCATGTGCCAACTCTGGAAAGCGTTCCTGAATGTTACTGCTGACTTTGATCGCCTGcctttgcatctttgccagaactTGCTCTCGGGTTGCTGCTATTCATAGAATGCCCTTGGATAATGTGATAGAATGAGTG----------CTCCAATCATTTTGGAGGTGGTCATAATGGGAACTAAAATGGTCAGCGAGAGAATGAACTAAGCTTAGACATCT---------------------------------------------------------------------------------------------------------------------------AATA-----------aaatctctctctatat------------atacacacatatatgtattttgt-------------------CCTTAGAATAACCTAAAAGAAGATAACATAATCCTGTATGAGTAGATAAGCATTAAACATGCTAACATAAAATACATTTCCTGGGTACAGATAATATATGCTTTAAAAGACCACTAATCTTGCATGggatacaaatttaaaatga--------------ctCACAAAAA----------------------------------------------TCTGAATTGT-AAGAAAACAG------CACTAggttatttttattggaattattattattattttttaaaatttcaaatagtgCTTTAGGCCTGAGAAACCAGCCTACTCAAGCAGTACGCGTAGCCTGGCTTTAAATAAATTCTACCTATCACTGTGTTGCTAATACTATTAAAATCTTCGGTGTCTCAAACATGCTTGCTTCTCTTCCTCCACATACCAAATGCTTAATATTATTACATTGAAGACCAGGGCTTGTTAGTCTGCCTGAAGGAGGACAGAAGTTCCAGGTTGGCATAgcttctattttattaattttttttt--ctttcctgcaacCTGATTTCTTCTGGGTCTGACCTAATTCCTTTGATGCCTGGGGGCTTGGAGGCCAGTGCTAATCTGCATCATAGAGGCAAGGTGCGACAAACGAAAGAAGAATAAAGGAA------------ACATAGCAAAAGTGCTCAACAAA-TCAAAATAAGTATTATGCAAACAGaacctttttttgtttcatgcCATCTTCTAAAGAGGAGCCTAAATTTAATACAGTTTCAAATACACA----TTTCACCTGTCTT--CTTTTTTAGATAGCTAATGTAACATTTTGTtgactaggaaaag----------------------aaaaagcaatagcTGACTGCTAATTTTTaggatgata-aaaaaaaatcagtgtaaggaaaaaaaaaaaatacctgtttATGAGAAATATGTCC-------TGCTCTAGAAGTCCTAATGATGGAGAAGATTTGTCCTGTCATGGCAGGCAG--------TCCCAGCTTTGTTACTAAGCTTGGGAACGTGATGAGATTCAGAGTTTCTTAGACCTGTCAACTAATTTAT--------------TGTTcccagattcttttttcttttgggaagCAGGTTCTTCTTACTGCTCAAATATGCGTTCAACATCTTGTACTCATTAATATACTAAAGGCAAAGGCTACTGGGGCAGAGTTTCAAAGTATCTTTGCTC-TCTTGATTTTGGATTACTATGACTCTGGGAAGAGTGGGAAGGTGAAATT--------TATCCTTCCTTGCTAACCAGGGGCACGCTTCTTTCTTGGAGATGTTAAGAAGTTGTAATTTAGTTTGCAAGGGATTACCAAAAGGAG--------GGTGTTCGTTTATGTTTTGATTAATGAATATTCGCAAAGTCGTTGATAGATCAGCTCCCATCAGAAGAGATGTAC------TTTAAGGCAAGAGAATGACCAGTAGTAATTacggttcttttttttttttttttttttttttttgtctttttcattttta--ctggtaccagggattgaactcacgactgcctgcttgcaaggcaggtg-cttatgccgctgagctaaattcccagcccctgtaatTATGGTTCTTGACACAGCCTTGTTATAGGACTATTTTCACTGCACAGATATTTGAAGTCACTTGGTGCCCAGTCTCTCAACTTGGTGTTCGTTTGGCAgccaaattcatgtttcatggCCAGGTGACTCTGCTCTGGGCCATAAGTAGAAGGGCTCTTCTAAATCAGAGAGC-TGCACCCTGGACCTGTGCTTATCGCTGAGC--ACAGAGCTTGGC-TGTTAGCATATCCTCGTagact-gaaatatttattttaggcaactatttaaaacttttaatttattcat

a score=121092
s chr3           149356968 5393 + 160039680 [encoded data, 5683 characters]
s HiC_scaffold_1 136002521 4765 + 233722169 [encoded data, 5683 characters]

a score=57735
s chr3           149363602 3315 + 160039680 AGGTCTTGGGCCTAACAGGCAACTGGCAGGGATGCTGCTCAGTTTAAATAGAGACAG-TGCACAGCTGTGGATTCCCCGAAGCTTCC----CAAAACAAACGTGTAGACAATGTTGCCTCGGGTCT-TTTCAAGAAGCAAATATGG--------TAATGTTAATAACATTGAAAACAATGAAGAAGAT----TGACTTTAAAAATATCGCGATACTGGGTTCACGAGGAAGGTTACTTCTCTCTCGTCACGTTTCCCCCACTGGATCTGCTTCCCACTCGGAGTAGAATCCTTTCCTGTAACTTCACTAAAAGAAGCTGGCTGTGGTTTGGACCTGTAAGTTCGAACAATGGCTTCCAGAAGGGTGAGTG-----------TCAGCTTTCCCTGGTGGATGTTCTAAGTCTGTGTCGAGGAAGGGTCGCACCTCAGTGACCCCTGGGTACCGGAGCCCCGCGTGTAAGTCATCAGGGCAGCACTTTCTTCATTGAACTCCAGAGAGAAGTTCCTGTGCCCAGTGGGTGAAATAACATTACTGGGGGACCTGGGCGGCAGAGGGCCACCTTCCCTCCTGACCTCAATTTCCCAA-GACACTGTGCTGTCTGTCTGTGTATGTGACCCACTCACTGGAGAGAGCGCAGGTCTGAGAAAAGCTGCAAAGCTCTCAATAGATGCCTGCCCCAGTCTAGG--GTGATAGCTGTCTTGGCACCTAGTCAAGGAAAGAGACTGGATTTCCCTGGTATTTGAGAAAGAAGACAGGGAGTACGATTTGG----CTGTTTGGAAAGA-------ATGTG--TGCCACCCGCTTACCAAGTCTGCCCT--------------TGTCTACTTAA--ACT-----AATCAGATATCAC-----------TTAATCCTTTAG-TTGAGAATTTGACTAT---ATTATTTCTCCTCTATGACAGAACAGGTGATTGTATTTTGGGGGA---TGTTTCTATGGGTGTAAGCATAATATACATTTGTGTTTCTTCTATGTGGGATATAAAAGTTCAAAACAGAGCACAATCATTTGGGTTTTATTTGCTTAAATAGACAACACCTTACTGCCTAGTGAGTTCAAACAGGTAGCTAAAGATGGATTTGCCCAGTTATCTCATGGGCAACCAGG-TATTTATTGAAGTTGATAGC-TAAAAGTTCTTTCTAAT------GACAAGCAAACAGTATAGGAAGGTGAAGGGCAATGGCACCGTGCAGAAGGAATTCATAGTAACACACACACACACACGTATGTATGGTATGG----GTATGCTGTATATTATATCCATGCAAATATTTAATACAGCCTTTCTCCAT--------TGGCTACTTGGCTGCAGAATGGCCTTTCATGGTGGAGCAGGTCAGAGGGATCTTCCCACTTCTAGTTTCACAGGGGCTTCTCTTACTG-------TCTCACCGTCAGGTTAAAGGTCAGTAACACACAAGTAACAAAGAAGGGAGAG---TACACCTGAGTGGCAGAGACAGGAGGATTGCTTACACTTAGGCCCACTGGGTCACTTAGGGCAATACAG--AGATTCTATATTTAGAGAGAGAGGGGAGAGGGGAGGAGGAGGGGAGCACTGTGGTGGGAGCACTGTGAATCAGGTCAACCTGGGCTACAGAATGACATCAGTGTAGTGTAACAGGAAAGGAAGCTT-GTTCAAA-------TTCTTGTTTGTTTTTAAGATGGCAGTGGCTGTGGAATGGCTTTGAGGGTAAGAGTGTGAGCTAGAAAATCTGAGTTTAACCTCCTAAGCCATAATACAGAGAGAGAGCCTACATCTGGACGTGTTCCTCGTTTCACATGCAtctctctgtctgtctgtctgtctgtctgtTTCTCTCCCCCCCCTCTCTCTCTCTcacacacacacacacacacacacacacacacacacacacacacTCAGAGAAATTTCGAAGTTAAGATGAGCAGAGGTTTCCCTCAGAGAGCCTCCGAGGACGCCATTCCCTGCCCTCAAGCTCCGAGGACATTGTCCCCAACGCCCTCT---CATGTGTCCTCCTGTGCTTCTTGAGCTGCTCTGCTTCTCCACAG-GAATGTTCTGGAACAGGAAGTT--TTGTTTTATCTGAAGCTTCTACACAATCAAACTG--AGTACCCGTCTTTTT------CCAAAACAACGCAGCCAACTGGGACTGCTTAAAGGTTGCTT-TGGAGAATTTCTGATTTCCCTAAAACTATAATTGCCAATAAAAGTTTTCACAATGAAATTTACCTCCG-TGTAATGAGAGATTAGGGAACCAGTTACACTTTTTCTCTTCCCCCCTTTCCTTTGTAGAGTTAGGAC-ACACTGGAGAGGGAAGGACAGACAGCTGGAATCTATAAGAATCTGGAAACACCAACAGTGTTGAAATTTACACTGCTGTGTGCAGATGTTGTCAGGAAACCAGGAGAAAATGCATACAAACAAGGA-----------GATGTTACCAAGAGCTGTTCTTCTATAAGGGACACACAACATTACAGTTGTCCATTTTCTGAGGAACACTACTGGTCCATAAGATGGAGCAGG--GCATGACAGCCAG-GTTGACAAAAGCTTTGCCATCTTTGACACAGATGTGGTCTATTCCAGATGATGGACGT----AAGCATACATTTTAAAAAAAAGCCtttttaatattatatttaaaaaGAAAGGCACAACTAACAAATCAGGAGAAACAGTGCCAATTGGCACAGCCTTCCCCCTGGGGTTCCAAGTTCATAGAAAA--------CCCCCTGAATCTTCCGGGCATAGCC-TCTAATAATATGCTCCCAGCGGAGAGGCTGGGACACAAACTCCATTGGTAATTCACAGCCACCTTATCTGGAGGAGACTAGTTAATCAAAGTGTGGTGGTTGGGACTGTGGGATTATACAAATACA-CTCGAATATAGACAAGGTTTCCTTTTTTATGTTCTTGGGGCTTAATCTGCCCACTTAGCAACTTTGTTAGTATTCAATTGCTCCTGCAGCATAATTCTGTAGGAACTATTTCAAATAGATCCTCATCTATTCATGTCCATAAAGACCCAAAGGCAGCAAATATTACTCAAGAAGGCAGGTGCAAAACTG-ATTATCACAAGTCTGTTCAAACTCTGCCTCTGAAAATACGATTAGCTCttcgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttTTACTTGCATCTGCACAGGAGGGGTCTCCTTAAGGTCAGAAAAAGTTATTCTTAG-----------GGGGACTTGAGGAGTGGGAATGGCAAGAGGTGTG-CATTCAGTGCTTTTATGCATGGTTTAGGG----TAACCAAGTCTACAATTACTGGAAAATAATCTTGACCTGTGTGGGCAGGATAATGGACTCAGTCAAATATGAAATAGGAGGTTAGGTAGGTCTGGGTTCACATCTTGCTTATTT
s HiC_scaffold_1 136007913 3026 + 233722169 AAATCTGTGGCCTAACAGGCTGTTGGGGACAACGGTGGT--GTTTAAATAAAGACAGGTACATGTCCACGGCATTTTGGAAGCGGCCAGAACAAAAACACTGTGTGGCCAATGCTATTTCATGGCTGTTTTGAGAATCACATACAGAAAAAAGATAATGCGTAAGAAATCAGAGACAATGGGGAAAATAAGATcaacttaaggaaaaaaagtcattttGTTTCAGAGGAGGGTAGGATC-----CAAGAggactttgttgttgatt----tttacaGTCTGTGTTGAGTATTTTTCCCTAATCTTATTAAATCAAGCTATCTATGGTTCGAGCCCACAGCTTAGGAGAATGTCTATCAGGAGAGCAGATGACACACTCATATCACCTCTATATGGTGGCT--TCTCGGTATGAATCAAGG---GATCATCACCCAGTGACCCCTGGGTGCAGGAACTC-GTATGTGATTGATCAAAGAAGCCCTTTCTTTGTTGAGCTC-----------------ACCCAGCAGGTGAAATAACAT-ACGCGGGTGCCTGGCAGGCAGGTCAGTGTATTCCCTCCTGACCTTAATTTTCCAAAGACACTGTGCTGTCTGTTTGTGTATATGACATCCTCACTGGGAAAAGTGTCAGGCGAAGAAAA-CAGCAAGGATGCTATCAGATACCTTTTCTGGTGCAAGTTGTGATAGTTGTGTTCACATTTGGCTAAGGAAGGAGGCTGGATTTCACTG-TGttccagaaagaagaaagacagactcATGTGGATACCTGTGTTCAAAGACAGACTCATGTGGTTACCTGCCTTCTACTAAATCTTTCCTGggaaatttgtatttgtttacttTACTACTCTTGAAATTACAAAGCACAATTGCTGCTTTTAATCCTTCAGAGGGAAAGCCTGATtatcatattatttcttttctatggcTAAACAAGTGATTAGCTTCAAGAGGAGGCTGTTTCTAGGGATTTAAGCATAATATATATTtgggtttatttta-----aatttaaaagttaaaaatacaacaCAATTATGTGGGCTGTGTTCTCCTAAATAGACAATTCCCTAATGTCCTATAAGTTCTAGTAGAGAGCTAAAGATGCTACTACTTAATTACTTCGTAAACAGCTAAGATATGTCTAGAAGATCATTGAGTACAAATTCTGAGAAATCAAGCAGACTCACAAACACTTTCAAAAGAAGCAGACCAGTGGCACTGTTCAGA---------TATTAACTGCTTGACCGATGTGGAATTACTACATGAAGTAGCTTCTTGTGTACTTTCTTCTCGCACATATTCGTTATAGCCTGTCTCAATATTAAGTATGGCTATGTGATTTTAGAAAAACCTTACACAGTGGAGGTGGAGAGTCCCATCTTCCTGCTTCTTGATTCATAAGTGA--CTCTTACTGATTTTCCCCCTACTGCTAAATCAAAAGACAGTGATGTTCAAGTAGTTAAGAAGGCAAAgacagctacttggaaggctgaagcaggaggagt--------ttGGGC--------TCACCCTGGACAACATGGTGAGACTgtaccttaaaagaaaaacatgaaaaagaaaaggaaaagaagaact------------------------tcaa-------------------------------aacaggaaagGCAGCTCAGCTCATACAACCGTTTCTTAGCAAATGTTAAGATAGCAGAGGCT------TCATTGAGACAGTAATAG---GAACAGGAAGAGCTTAG--------------------------------------------------------------------------------------------CTGTT------------------------------------------------------------------------GAAATCTC--------------------------------------------------------------ATCTACGAAGTCATTT------ATGCTTACTGTATAAATGTTCTTCAATG-TTCTCATGAAATTCTACATGTGTATAATGATTTTTCTGGGGCATGGATTTAAGTGTTTTATCTGAATCTTTTGGAAAACCAGGTTGTAATCACCCATCTCTTTGACACCCCAAAATTATAAGAACCACTGGGATTATTTAAACATTGCTTGCTGAGAATTTCtgaactgt-taaaaatatgatcGTTAATAGAAGTTTT-ACAATGCAACTTATCTCTTCTGTAATGAGAAGCCAGGGAGCTAGTTAtagttcctttcttcctttttttcctttgtaatgtTAGATCTCCattggagagagaaggaaaaacagcTGGAACTTATAACTATTTGGAAACATCAACAATGTTGAAATTTACACTCCCATGTGCAGATGTTATCAGACAATCA--AAAAAATGTGCAcaaacagagaaagaggaaagcaaTTTTACTGAAGCACGATTTGGTTGGATGGGCCAAAAAAGTTACACTTGTTCTATTTCTGAAGAACATTGTTGATCAATAAGGCGAGGTAAATTATATTACAGCCAGAATTTGCAAAAGATTTTCTAACTAGGTGATAAATACCACCTATGCTAGATAATTGACTTCCTGAAACATG-----TAAAACGAGTCCCCCATTATGTTATGT-----AAGA---------------------GAGAAACGCTGCCAGTTGGCAC------TCTATTTGTATTTCAAGTTGATAGTCAAACATGTATCTCCTTAATACTATTGGGCATGGTCATTTAATAATATGCTTCCTGCAGAGAGCTTGCTCCAAGCCTTCCTTTGCTAATTTATATCCTGCTTATCTAACAGAAATTGGTTAATCCAAGTATGGCATTTGGGA-TGTGGGATTAGACTAATACatcacaaatata------atttttttttttgcttccttgggGCTTTATCTGTCAAGTTAGCTTCTTTGTTAGTAATAACTTGCTCCTCCAGCATAGTTTAGCAGAAATAGGTAAAAATAGAT----GAGGTTTAGTATCCATAAAGACCCTAAGGTGGCAAA-ATTACATAGGAAGGGAGGTATAAAGCTGAAATatctcaaatatatttgaaaatttcctcccaaattaa---------------------------atatttttttaatttgttgtgtccaggtaaatgatttattt-----------------------ttaaacccaGAAAAGGTTGTTTTCTGCCCACCCTGTAAGTAGCTGGAGGGGGAAGGGGAGCCAAAGACATGTTACCGGGCACTTTTACTTATGCTTTAGAGATGTTGGTAATGTctg----tatttgaaaatgacatttg-cTGTATTGCAAGCATTGTGAGTAGATCAAATTATGAACAATGTTATGAGGTA-GTCTAGATTTAAATCTTGGCTCTTT

a score=19566
s chr3           149368062 422 + 160039680 GCTACAAGAGCTTCACACACACCGCCACATCTGACTTCTATATCAACAGCCCTGAGC---CCTGAAATGTGCTCAGGAAGTGAGCTTACTGCATCAGTGAATCAGTGTGGGAGAGTTCCAGACAAGGGCAGTCATTTATCCTCTTTGTTAACAAACCTGATTGCCTTTTGTACTTTAAAATAGCAAATGCTACATTGGAGCTTAAAATAGATTTCTAACTTGGTAGCTACCCCGTGATTTTTAGCATGAGGGTCTCTTTTAAATGTCCGAACTCTCCATGAGTGTTTGTACTTGAATTATCTTGTGATTGCAAAAGTGTATACCACAGCAGGTGCTAAGACAGCTCCCACATATATTCAAAACTAGTTCTAGGAATGGTGTTTGTCGCTGAATCCATGTGATAGTAAAACAATTGAAGACATGTT
s HiC_scaffold_1 136011699 417 + 233722169 GCCGCAAGAGCTACAAGCGCACAGCCACATTTTATTCATATACTGAAAGTCCTGAGTGTACATTAAGTGC---TGGAAAATGATCT-GCTGCATCAATGAGTCAATTTTGGAGAGTTCCAGATAAGGGTATTCATTTATCTCGTTTGTTAACAAACTTGATTGccttttatatttcaaaacagcATATGCTAACCTAGAGCTCAAAATGGATTTCTAACTCAGTAGTTAGCAAATGA-TTTTAGCATGAGGATTTCCTTTAAGTGTCAAAAAT-TCCATGGGTATTTGTACTTGAATTATCTCTTGATTGCAGAAATACACGATACATCAGCTGCCAAAACAGCT-CCACATATATTAAGAACTGATAACATAAAGAATATTTGTGGCagtatttttgaaatag-aaaacaattgAAAGCAAGTT

a score=54770
s chr3           149373193 2019 + 160039680 TAGCAGTAGCCATATTTACCTATGGATATTGATATAGTCATAATATTTATTTGGCACTGGTTACATATATCGGATTGATTCAAAGCTCTTTTAAA-----------TTTAGCATGC------------TCATTCTTCTATGTATCTTTTTACTAGACAT-AATCATAGGAA---------------ATATGGGGTCCCAGCATGAAGGCACCTGCTTCTAGG-----TGCTATAGAGAAAAGCATGGAGATAGTGTGTGGGTCTGATCTTGGGTATGGTTGTATTATCATGTGAGTAACAAACAGAGAAGAAGATacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacacactcacacatacacacCCTTGAGAAGA-----TGGAGACTAGCAAAGGAAAGTAGCTTGATTGGCAC-TTACCATACACTGGGGC-CGCTGGTCATCTTTGGAACCAAGGCCAGCTCAGCTGAGCTAAA-GGAGTGATTTCCTGCTCACTAACTTGGTTCTTGTAGG-TCTTTCATAAAGGAAAGTGTGTCTGTTTCTTTTCATTTAGATAGAGGGACAGTCAGACGTGTTATTAGATTACCTTTCACCCTGAACTTGTCCTGAACATTTTTC---ATGGTAAAGAATAGTCTTTTTTTTCCAGGAAAAAAGAA---AATTCTTTCACGTTAGTGACATTGAAACCTAATAGATTGGGCTAGTTAAACAGAAAACAAATTAAAATCGCTCAGCTGCCATGTTTTTTAATCTGTTCTTTTAATTGGCCCACAAGTTCCTAAAGGGCATTAGACTATTATAGAAATATACAGAGCTATGTGGTCTGAGATTTCAAGTTAATACTCATTTTCC-TGGTTTGTGAAGACCATTCATTTTCTGTGGCAGTGATTTCAGGGACTGTACCTCTTTT-------------------------GCTGCTGTATAAATAATTGTGTTTATTATG----AAGCAGCACATGATCT--GCAAAGTCAAATTGT--ATCAGTTTCCCTCCAAGGAA---GTATCTTATATAGATGCTGCAGGACTCCTGTAGTTTTAATTTTCATTTGCAATGAACTACAGTACCAACTTTGTCATCAGTACACTAACTCGCTGTCATATTTGCTTCTTTAATTTTAGCTACAAGCTTTCTCCATGCCCAGAATGGCTACCCCACTTTTCTTGAAGTAACATCTAAGGGTCTGTTCTTGTTAGTCTTCTACCAAACAACCGCTAGCAGCCTCCTATCTCAGCAAATATTTTTGAATATTTTACCCAAATATTCACTGGTTGTACTTGTTGTT---CATTGATAAGTGAGGTCCTTTGCTTTTGTTC-TTTGACTTGATTCAGTCGACATCAGCCATAAATTGTGACTACATCATACACTC-------TTGACATTTCACA----CGTTAGGACG-------------------------GCAGCCTTTGGATTGTATTTCAAATGTGAAAAATACATTCAGTTTTAAGGTGTATTTTTTTGTGCTAGACTTATATTGACACAGCCTTATGATTTCCCAGTATTCACCCAAGCCCCCAAAGCTGTACCTCTCTAAGGGAAAAGAGTGGGCTTTAAATAAATTTATAGGACCATCACTTTTATATGGCCAAATCATAAAAGGATATGTGGAAATAGCATTGATGAAAGTTAAGCATTCTCTTCAGGTTTATGGAAGAACAAAGGGATGGAACACTG---CCACTTTTTATATATTTATCAAAGGCTGCCAGACTACAAGCAGCCTACGTAGAACTGACCACACCACACTG-TGCTGGG-GACCAAGTGGAGCTTGTGGTGTTAAGT-GGTCGTTATGTTCAAAGGGCAGAGGAAGAGGCACACCTGCTTCTCCTAAGCACTAATAATCT---ATCAAGAG----GAGAATTGTTCTGGAAATGTGTCGTGACTAAAACGAATAGATTGACTTGATACCTCGGCACTGCTGTATCCCTTTCCGTGTCTGAGCAATGTACGGAGTCGCCTTTGGAAGCCACGGTTTTGCGCTGATTCGGAGTTGCTAATG-----TGTCATCTTCTGGCAGAGATGCGAA-----AGC--ATCCATCCGCTTCAGATGTCATGCCAGGAAACCTTCCTTA
s HiC_scaffold_1 136014527 2079 + 233722169 TAGCAATCGCTGTATTTTGTAATGGCCCCTGATTCAGTGAACA-GCTTACTTGGCACCAGTGGTTTGTTTCAGACTGGT-CAAGGGTCTTTTAACCTACTGAATCCTTCTGTATGCCTGCTACATAATTTCCTCTGCAATGTATTCTTCTGTGAAACAGGAATAACAAGAATATGGGGTTCCAGGGACATGGGGTTCCAGTAAAAGGACAA-TGCATATTGACAGTCTGTGGCAGAGAAAATCATTGTAATAGTATATTCACCTGGATTTGGTGATGGATCTGCTATCA----AGTGACAAatagagaa--------------acacacacacacacacacacacacacacacacacacacacacgtcctaA-------------------------GAGAAGACTGTATGGAGACTTTGAGATAAAACTTCTTTAATTACCACCTTACCATACTCCAAGGAGTGTTGGTCAGTTTTGAAACCACGGCTGAATCAGCTCACCTAAATGAAGTGCTTTCCTGCTTACTATTTTTACTGTATTAGGGTTCTTTACAAAAGAGaccatgtctgatttattttgtttagcaaGAAGAACAGTACAACATGCCATTAGATTACCTTTGAATTTGACcttgtgcttttcatttttttttatggtaAAGAATAGGGcattttt--caggaaaaagaaatgaaattctttCAAGTTAGAGACACTGAATCCTAATAGATTGTGCtatttaaacagaaaacaaattaagattGCTCTGGAgccatttttttt----------tgtaattagtC-ACAAGTTCCTAGAGGACATTAGACAATTATAGAAATATACTGAGCTATGTGGTCTCAGACTTCAAATTAACACTTTTTTCCCCTGATTTCTGAAGACCTTTAATTTTCTCTAGCAATTATTTCTGGTGccgttatttttttttctcttttcttttcttttctctttgctcctGGGTAAATCCTTACATTTACTTAGTAGCAAGCAGCACTAGATTTTTGCAAAACAGAACTGTTcgtttgttttcttaaaaggaaCCATTATGGTATATAAATACTGCAGAGGTTCTCTATTTCTG-TTTCagttcataataaaatataacatacaCTTCATTATCAACATACTA-CTCATTTTCCAATTGTTTTCCTAAATGATTTCCA-AAGTTTTCCTT----CCAGGACAGGCATTCTAATATCC---aaagaatttct-------tccttttgctaATGTAACACGAAAAAATGGTTAAGGGCTTC-TGcattaggaaatattttt--atgttttact----tgTACAATTATTGTGTTTGTTCTTTCACACTGATGTATCACTTcaactgcttttcttcctttgatttaATGTAGATGACATCTACCAGAAACCGTGAACACATGAAATATTCACAGTTTTTCACATTGCACAAATACAGTAATATGAATACCTTTCCAGACTTCATTTCTTGTGGTCTTTGGAATCTATTTCAACTTCAGACAATATGAACAGCTTTAAAACTC--TATTTTGGGTTCAGTTTATATTCACATGCCTTTAtgattttccagtatttttttaaacCCCCCGAGCTGTGTCTCACAAAGGAAAAATAGTgggttttaaataaatttataggaCCATCACTTTTATATGGCCATATAATAAAAGGACATGTGGAAGTAGTATTGATAAAACTTGAGTATTCTCTTCAGGTGTGCAGGAGAACAAAGGAATGGAATACTATGCcccctttttatatatttatcaaagACTACCTGCCTACAGGCAACATATGCAGAACTGACCACAGCTCGGGGCTGCCGGACAACCAA--AGAGGTTACGCTAACAATTAGGTCATGATGTTCAAAGtaagtaggaggaagatggagtCATTTTTACAAGCATTCATAATTGGGAGTGAAGAAATTCGAAAACTGTTTTTGAAA--CCCCCTGACTTAAGTAAGTGGA--------AAAATTCATAACTACAGTGCCCCTTTTC---CCTGAGTCTATTATCAAGT-GCATTAGGAAATAGCCTTTCAACCCTCTTTGAAGCGTGCTGGTGATTGCTGGTATCCTGTCATTGTGCTGTAAATAATCAGTTAATTCAAATGTTTCCAATCACATGCCAGTAAAACTTCCTTA

a score=38657
s chr3           149381574 2356 + 160039680 ATGTGTGTGTTATTACAATTCCTCCCCCCCCCCCCAATACTTCCTTTATCCCAGTTTGGTCGTTTCGGAT-GATTATAAAAGTCATGTATTTATCATCCTGACCTCTGGCCTCTGCTATTAGCACT---GCATATCCCGGGCCTTGCAGAG--CTTTGA---AGAGG-----ATTCATTCTGCATGATTCTTGATGAAGTGTCTGGCCAA---------AGCTTCTC---TTCTGTTGTGCAAGAACAAAGTGGGCCCCATGCCAAAAGGGAAGAC---------------------------ATGGAAAGGAGAGAGTAATGAACAAAAG-------------AACTTGGGGAGGGAGA-------AGAGAGGAGGG-------AGGAAATGGAGG---CTTTTTAAAAACCAGGTTATACCATCCCACTGTGTGAAGCGA--GAGGGGTGGGTCGACCT-GC-AGGCATTTGTGGAGCACCATGGTGTTTGGGCTGCCCGCATAAAACCGGCTGGAAGGAGTCCCAGAATACCAGGATACTAAGCAATGTTTCTTTAGTTGGCAGGGCTATGCTGTTCCCTTTTCAATGCCCAAGAAGTCTGAAAAGTGAAAGTTGCCCACCCCCGAGGCTGCTGGGAAAGCGGCCTAATGGGTCCCTGGAACAGGTTAGCGAGAGCCAGCATGCATATCTTTGGACTTCACAGTTTTGAATTGAACAAAGCAAGATATTTAAAAGTTTTCT--AATTGACTTGCAGAGAAAGGCTGGGGAGATCTGCATCCTTCATCTTTGTACAGAGAAGAAGGAAGGAAGCAGC------------CGCCA-GGCTCCGCAAAGGCAAAGCCAATAGAGCA-GGAAGCTGGTATTTAGTGCTATTTTGTCGGTAATGATGCTTCAGTGTATCAAAAGGGAA-----TTCCTTCCTTTTA----TCCGACATGGTACCTACAGGACCCAATATGCTCATCTTTGTTCTAATTAAAACCATGTCAAAGGACGTG-TCTTGCTTTTAAATATAACATCAAGGATAACATTTTGAAAAAATAAAATCATTAAGTCCAAGTGATGAATCAGAGTTGAGTTTAGCCTTGAAGTCTATGCTATACCAAAACAAAAATCTATTGTAAGATTTCACTGGGGTTGGGGTTATCTAGAAATTCCTTTTGCTAAAGGGCTGTATTGAAACACAA--GGAGTTAACTAAGACAG--AATGTCTGTAAATAGTGTAAAATGAGTC-----TGTATACTGGCATGCTTGAAACATCCTACTT----------------------AAGTAAT--------AGACGCACTTCAAGATGGTTGTTTTCAATATGCTTATAGACaaaaatatcatttttattaaggataataattaattatttattttGTGGTGCCGAGGATTGAAT-----ACTAATGTTGTTATTTAAATAAACCACTC----tttcatttgctttaaaattttttattcatatgtgtatggatgtgtgtgtataccagttgtgtgcagccatgtctgaagccagatgaggacatcagattatctggacttggagttaaggtggctgtgaccccctgatgtggattctgggtaccgaatttaggtcttatgg----aagagtagcaagCCAGCATTTACTGGCCAGCAAATAGCTGAT-ATCTGTTTGATTTGAGCTGTAATAATCCCTCCTCCAC----ATTTCCTGAAGCCTGGTACCACAACAATGTGATCCAAGTTGTTGCCATCCATCATACTTTGTTCTCATCTATAAAGACAGACATCA-AATAAATCCACCCACAG----ACTTGTCTGTCCCTCTGCTGGCTGGAAG-CTCCTGAGGATAAAGAGAGTTTCT------------------ATAATCT-----------------AGAAGTCAGTGA-GTTTGCTTCACCGGAGAGCCTGAGAACAGGAGTGATGTGACTGAGTCTGAGCCTGGTTTTCCACCTACA-CTGCTCTCAC-TGAGCGCTGACTG------------------------TCCATTCCTACTGC--TATAAAGAAAGACTTGAGGCCAAGAACGTTCTCAAGGGACTATGTGTATTTAGCTAACGGTTCTGGAAGTTTAAGGGTATCATGCCACTCCACTA------AGGACCTCCTGGTGGGTGGCACGGCTTTGGAGCAAGTATGAAAGAAGAGAGAAGATGTGTGAAGATGTGAACCTGGAACATAGACTTGCAACCTTGTCATAGGTTTACTGTTTAGATAAAAACCCTTCCTTGAGAATACCTCATACCCTGAGACCAGCATCAGTTATTTCTGGGGGCAGCTCTTTGAATGACCTAAAGACCACACAATAAGGACCTACGATCCTACCCTTTAAAGGTCTAGCCCTTAACATTGCCACACTGGACACCAAACTCCTAGTGTAGGAGGTTTTGCAGGGGAGATATTCAATTCATATCCTAGCCGTGGCAGAGGCTGAC------------------TGAGAGGAACAAAAGATAGCTCATTATACCTTCAGTGACCTTCAAG-ATAGGACTGATGACAAGAGCAT---TAGCTCTTCAGGAAATGCC
s HiC_scaffold_1 136024573 2484 + 233722169 atatatatattttttttttttttttcccctcactgaAATAACTCTTTGCTCCAGTTCGTTTGTTTCTGATAGATTTAGAAAGCCATGCATTTATT-TTCTGACCTGTGCACTCTGGCTTTAGCTCGCTGGCAGCCCCCGCCAAATGTGGTGGCCTTTGACACAAGGGCCCATACTCAGCCTGGTTGAATCTCAGCGAGGCGTCTGGCCAACTGCAGAGGGGCTTATCATCCTCTGTGATACAAGAATAAAGCGGGTCTCTTGCCAAATTGCAAAACGTTAAGGAGTGAAAGTTGACAGGCGAAATGGAAGGGAGAGGgtgagggaaaagaagagaaaaggagacaagttggggagagagggagatggagagagggggaggagaaaaggaagtggCGGGCCTCTTTCATTAACAAGGTTGTAAC-TTCAATTGTGTGAAATTACCGTAGGCTTAGTCAACCTCGCGAGGCATTTGGGGAACACTGCGGTGTTTGGGCTGCCTCCATGAAACTGACTGGAAGAATTCCCAGAATCCCCGGCTCCGAGGCGTTGCTTCCTCGGTTGGCAGCGCTC--CAGCCTCAGGCTCAGCGCTGGAGAAGCCTGGAGAGTACAAGTTGCCCCAC----AGGCTGCTGGGCAAGT-GCCTAATGGTTCTCTGGAACAGGTTAGCAATAACTGGTACTTCCAGCTTTGGATTTCACCATTGTGAGCTGAGCAAAATGAGATTTTTTAGAAGTTTATAAAATCGACTTGTGCAGAATGGCTGAGGAGACCTATATTATTCatctttg----gaaaagaaagaa--aagttgcaGGTACAGTTAACGCCAGGGAGTGGCAAGGGCCATTCGACCTGAGGGTGGAAGCTGATAGTTGTTGCCACTTT---GGTAATGATGCT--GttgtattaaagggaaaaaatttttttttcatttagtttttcaaCATGGTAAACATAAGACCCAAAATGAATCTCTTTATTCTAAttaaaagaatgtgaaagaatGTATTCTTACTTTTGAAAATAGCATCAaagatagcatttaaaaaaa--------cttaagtCCGACTGGTGACACAAAGCTGAATTTATCCCTAGAGCCACCACTATGTTATAGAATAAATCTGGTACCAGTATCCTCGGG----GAGAGAATCCA-AAATGCTGTCTATTAAGGGACTTTTATTAACTACAGTCAGAGGCATTCAAGATAGACAATGCCAGTAGATAACGCAAAGTGAGTCCAGGTTGTGTATTGATATCCATGAAACAGTCTCCTTTAAATTTCTCTAATCTTAGCACAGGTAGTAGGAGGTAAGAAGCATTTAAAGAtgatttccttttatgtttttaagcATTCGTGTGTcatttgaatt-----------ttcataaatgtttcTGAAAAGACAAGCGTTCACTTGCTATCTCTTGTTGTGGTT----------ACTCCTAACTTCATTGA---TAAAATTCTCCTTTTACTTATG------TGTGTGTTACTATAAATTAT---CAGTCCTTGCTG----CTGTTTATTTTCTCACATAATTTTGAATGAAATTCAAGGCCTCCATAA---TTTGGTGCTGCTTCATGGCTCT---TTTTTATCTCCTGGCTTTAACGGTTAAATCTGATCATTTATCTTCTAGCAAACACCTGCTCATCCTTTAATTTTGAGCTTTAATGATGCCTCCTCTATATGGATTTCTTGACTCCCTGAGCCATACTTAAGTGGGATATGTTGCTG----CCCTTGCATTTTGTATATACTTGTTAGGACAGATATTATACTAAATCTGTTCCCAGGTACACACATCTTTTCAT---TTGACTGCAAGCCTCTTGAGGACAAAGataatgtcttgttatctttgtgGGCCAGTAACCTGTTATGTTGTCTGCAACAAAACTCCATGGTAATTGCCTCGCACGGGAGCGCTAAAGCAGACATGACATGATTGGTGGCTGGCATGATCTTCCACCCAGACCTGCTCTCAAGTGACAGCTGACTGTAAAAAATAGGAGTGTATTATTAATCCATTTCCCCAGCCGTGTAATGCCATACCTGAGATTAAAGACTTTATAAAG-----AAGTTTACTTAGTGTATAGCTCTAGAGATTCAGGGACATGGTGC--CTGTACTATAATGGAGCACCTCCTGGCAGATGGCCACACAATGTCAGGAGTGGGTGAGGGGAGAGAGTTCTTGTGGAGCGGGGAAGCCAGAG--------TGCGAGGAGGAGCTGGGCTCCATTTTT-TATAACAACTC--------GAGTCGCTTGCTCTAGGAGACCAATATCGGTCC-------------CCCTCTGAACCACGTAAGGACTTTTAACTA--GACCTAGGCCTCTGCCT-------------CCCATCACTTTCTCAGAGC-CCCATCAGGCTTCTAACATGTGACACTTTT--GGAAACGCATTCAAACCATATCCAAATCATCACAAAGAGGGACATATTAGATTCATGGAAGTTAGAGG--CAAAATACAGATTTCTGCATCTTCAGCAATCTTGTAGTATAGGGCCAACCAGATGAATGTTGCTAGCATCTCAGTAAATCCC

a score=66175
s chr3           149385001 2952 + 160039680 ATAAAGTAAAACAAAGGGAATTAGTTATCCTGAAAAATTCTCAGAATGAGATGGGATAACAAAGAACTAACTACTGAACTAATTAATTAATCAAAAAGCCAGAAACAAAAGAAGCCAGCATGCGATGAGGCAACACATAGAAACTTATTTGAAGTAAGTTGTAATCAGTACATCCAGTAACATAGGAACGTTTATGTCATTCAGGCACTGGCACATGAGTGCA-GTCAACAGCCCAGAACCAGCATCAAACTTCTGGGGTGGGTATTTCTCCATGGTGTCTGCC-TCTCTGCCTTCCTTGCACAAGGTAGGACCCTCTGGCATTGATCATGCCTTTTGCATAAGAAGGAACATAAACACCGGGTTTGTACCCTGTGCCAACCTTCTTTCAACAGCCTATGATGATCTTTGTTCACTC-------------------CCCCATCTTTTCTCTCTGAT----TGTCAGCTGAAGCTTGGCCGCGGTGCCTGCTGGG-----------------AAAGCATCCTGCCATTGAGCTACAG------CGTTGGCAGGTTTTGC-----------------AAGGTTCTGCTGACAGTGCGGATGA---CCCCCCACTTCCAG---------------------------------------------------------------------------------------------------------------------------GAACAAAGAACAGGCTGTGTGTTTCACACTGGGGTGTGAT---------CCTTATGCT-------ACT-GTGTGGGATGGAGATGTC-------------TGCTGTGCTG---CCTCTTACA------------CTCTTCCTACA-----TCTCCATTTTAGCACTTGCTTCACGTTGGCTCATTATAATACTA--------------CTATAATCACTTGAATCTGAGTATATTACATTTTCTGCCCCCTCCCCACTGTTTCCA-CAGCAAACATGATCCCCGAGAGGTGATTACTTTAATAAGTATGTACTGAAA--AGTGAGTGAATGAT----TGGTCGGATGAGTTCAGTAAGCTGCCATGAAGTACTTGATTTTTCTAGCTCAAAGTCATGGTG-----ATTTTTT---AGGTGGCCTCTGGATTCCCTAAAAAGCAATTAGGACAGGCTTGATCACAGGCTCTTGGAAGCTGAACCATTACAATGGGCTTCAGCATATTTCTTGCAAATGGTACA--GTTTCATTTGCAAAGAATAAAGGTATTACTTTCTAATACTTGTTGAAGGCC-----AAGTACCTTG-----TGATCCCCTTTTAGACTCTTGGCAGGCCAGGGTTTACAGG-GAGGATATTAATAGAT--GTGTGATACTTTTATTGGGAAACACTGGCTTTAGGAGCTCAGGTTTGGTTCTACAGCTGTCTCCCCTTCATTACCACATTTCCTTCCTTATCACCCCACTCCCTCATCTATGGACTGTCTTCCTCCAGGCTCTGCTTATTTCCCTGCCTTACGTCATGCCAACCTAACTTGGTCTGTGCAAATAGAAACAGAGACCATGCTACTTCAGTTTGTGCAAAACCCTGAGGTTTTTATCTGCTGGCCATGGTCCAACAGGCATAAAAGTTGGAGGCGGTTGGTTCTGGTTTCTTGGCCTCTTATACTCTTTCTGAGGGTGAATGGGAGCCTAAAAGATACCTCTTTTCCCAATCAAGTCCTGATATTAATGAACTACGGAAAATGAGAACTTATTCCCCTTTTCAGTAACATCTGCCTCACTTGGGTACACATGGCCTAAATGGATAGG-TTTTTAAAAGCATTTTATTAGCATACTGAAAATTCCCATTAAACG-----CTAGAGAAGTCACTACGTTACACACGGTATTGAAAACTGCCCTTCTTGAGACTTCAAATGATGGGTCTAATACATTTTTTTCTCTCTCTCATCTATAATATCTATGATTCTGTTACCTTTAGCATAACTTAATTCTTGTGGTATCTCCAAAATGAAAATTTATTACATAAAGGTGAAA-TTTCGTGAAAGCACAAGAGGCAGAATCACTTGTAGTGAGGGAAGAGACGATCTTAGTCAGGGGTACCACA---CATGCCTAAGAGAA-CCAGGTCAGTCAGGTTTCCTAGAACACTCCACCTTACCCACTCCCATGGGAAGATGAGTTTTAACCACATTCAGATCTTAACACCTAAGTTTTTTGTTTTTTGTTTTTTTGGTGGTGGGAAGTATCTTCAGAAA---AACACACAAGCATTTTTC-ATATGTCTATATTCATTGTAAAAAGAATG-TTGTCGTTATGCCCATGTTCACAGAGAAACATTAGCACT--------------------------------------------------------------------------------------------------TCTCAGTGCTTCTCCACACTTGCAATGAGGTCCTAACAAATCGCCTTGTTTAGATTAGAACTTAGGTGTCTGCAAAAGCAGACAAAAGCCTCAGATGCAGTGAGCACTGTCTTCTGTTCGCAACAGGCTTGTGCTTTGTTTTGTTGAGAGGCaaataaataaataaataaataaataaataaGCCCTCCAGCAATGCCCTAATAGTTTCGGATTCTATGAAGTTTAATATCTTTTCCTTAAAGTTCTGGGTCAAGGACAAAGTTCCGTTTCTACAGAGCTAGTGGTA-TCCATGAAACAAGAGGTAAAGATCAATTAAAGTTAAATATTCTAGAAGAGCTGCTAAATGTATGGAAACAGTAGGAACTTAAAGCCTTTTTTGTTTCCTTTGGCAGTTCTCCTCCAAACTGTGTCCAAACCACTTTGTTTCCCTGCAGAATAAGGGAAGC--TGTGTTCTCTTTCCTTGGCAGGTGAAGGTAGCACTCACACACACAGAGGGGAACTTTTTTTTTCTTATTTGGTTGCTGCAGAAGCTGGTGGCTGAC----TGGTGGTA------------TCATCCATTTCAGGAGCCACAGGAATCAGGACTAGTTGCAG-CCAGTTTGC----TCTCCCTCCCATCA--CTTAGTGATAATGAGAAACACGAGTAAGTAAAACTGCTTAGCCCTGAGCCTGGACAGACCGGATGTGTCCT---------GTAACAGT-CTAGGGCTTCATGCAAATCAGC------ACTCTGAGGAAGGATGCCTGGATCCTCCTAGTGTGTTTTAT--------GGCCACAGCGTCTCTAAGCCACAGGGTTCTTCTATTCTTCCTATGCTTCTGGGAAATGTAAATTGATTTAGTCTGGCCTTCCC-TGTATATGGGAAGA-AGTACACAAGGCctttc
s HiC_scaffold_1 136028996 3163 + 233722169 aTTAAGCCAATCAAAA--AAGCAGTCACCATAAAACATTTTTGGAATGCAATGGAGTAGCGAATAacaaaccaatcaaccaattaattAATCAAAAAGCTATAAGCAAAAGGAGACAAAATCTGATGAGAGAACACACCGAACACCATTCAAATTAAATTGTAATCAGTCAGTCCGGCAGCAGAT-AATATTTAGAT-----AGGTGCTAGCAAATGGAAGCAAGTAGGGTACACATTACAAG-GTCAAACTTGTCTGGGGGCAGCTTCTCCTTGATATCCACCCTCTTTGCACTCCCTATTCAAAGTGAGACCCTTTG-CATTACCAACTCTTTATGTCCTGCAAGTAACATGGATCCCAAGCTT-CATGTTGTCCCTAAATTCTCTGAATAATTTATGATGACTTTCGTTCCCATTTTGTCTCAACAGgactgactttatttttattcttagatGATTCATTAATTGAAATATTGCAGTAATAGCCACAGGGCTTCATACATGTTAGTCAAaacctc-taccactgagttacagaCCTAATcttttcaagttttttctttttatcattttgagacagtcttgctgaaAACATAGATGCAACCCTTTCGCTTCAGGCTCTAGAGTAGTTGAGATTTCAGCTGAGCACCAGCTAGttgaccattttttaaaagaactgattGATGCAGAGTTTATAAGGTTCTGTAGCTGCAAACCTAAGACTGAGTTCTTATTCTGTATGAACAGTGAGCAGGTTGTTTGTTTCAT--TTGCGTGTGATATCTAAGACCTTTATGCTCCATTTTACTAGCGGGGCACGGAAACATCCTTGTTCCAAATCTGCTACACTGACCCTTCTTACATGAGCCCTTCAGCTATCCCAACGGCAGGTTTTTATGTTAGAATCTATTTC-------TTTGTTGTACTTCTAAGTTTTTGCATCTGTTACTCTCATTGGAATTTGAGCTTACTAGATTTGCTGCCCATTTCTA--TATTCCTAGAAACTAACAGAGTAGCTGAAA--TTATTTGTTCAAtgagtatttatttaaataaatgaatgaatggtcaGATGGATGAATGAATCAAATAACTCATGATGAAGTGCATGATTTTTCTTGTTTGAAACCACAGtgcatatattttttgaaaaatggtcTCTCTATTCCCATGAAAACAATTACTGCAGAAGCTATCATCAGATTT--AAGgctatattttttcattgtatttcagGTTACTTCTTGCAAATGATGCAATGTTTCgtttataaa-aataagtgattAATTATAAAGTGTTTATCTTATGCTGTGCTAAGTGTCTTCATTTCTTATCTCATTTTGTATCCGCAATAAGCAAGTGTTTACAAGTGACAATATTAGCAGACACGTGTAATATTTTTAGTGGGAAACATTAATTTTGGAAACT--GGTTTATTCCCACAA----------TTCATC----CTTTTCCTTGCTTAATGCCTTA-TACATTATCTTTTAATTATCCTTCCCCAGCAcctatttatttctctgttttatgtTGCTTCACCCTAACTGAGT------ACATAGAAACAGGAGAGataaaatgt---tttgtaatttaCCTCAAGGTTTTATCCATTTGGGCAATATCCAGTAGATGTAAAAAGGAGAGGTGGTTGGTTCTAGTTTCCTTGGTCATTGAATGATTTCTTGGGCGG--TGGAGGCCCTAAA-ATGCTACCTTTTCCACTCACA-ACTGATATTAATGAACTACAGAAAATGAGGACTTAGTCCACTTTTCAGTAACATCTGCCTCACTTGGGCACACATGGCCTAAatagatagattttttaaaagcattttattagCATACTGAAAATTCCCATTAAACGCTAGACTAGAGAACTCACTAAGTCACACACTATATTGAAAACTGTCCTTCATAAAACTTCAAAGGATAGGCTTAATACGTTTT--------TCTCATCTCTAATATCAATGATTCTATTATATTTAGCATAACTTAATTCTTTTGGTCtctccaaaatgaaaatttattacacACAAGTGAAGTTTTTTTGAAAGCACaaggagaaaaatcatatttaatgAGGGGTGAGATGATGTTA------AGTGCCACAGTGTGCTCCTAAAAGGATTCAAGTCACTGAAAATTTCTGAAGTACTCTGCCCCAAGCATTCAAATGGTAATGGTGGTTTTAACTGTCTTTAGAGTTTGACACCTGAA----------AACATTTTGGAGGGGAGGGGGACAGTCCTATGAAAACCAATACACAAATATCTTTAGGGATAtctatgtttagttttaaaaacatgcttgTGACTGTAATGATTTTCATGCAGAAAAATAAGCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCA----------------------------CAACAAGT-------TCTAcatta------------ctgcaaaa------aaaa-----------------------------------------------------------------aaaaaaaaaaaaaaaaaaacaaa-aaaaaacctctgtaGCCATAAGTTAATAGTTTAGgattttagaaagttttatatctttcctttaaaattctGGCTCAGTGCCAAAGTTCAATTTCTGCTCTACCAGTTGTATtccataaaa----aagtaaaaatcaattaAAGGCATATATTCTAGAAGAGCACCTAAATGTATGGACACATTATGAAGTTaaggccttttttgtttttcttggcagTTCTCCTCCCAATAGTGTCCAAACCACTTTGTTTCACCGTGGAGTAAAGGgagctgtgtgttttcttttcttggcaGGTGAAGGTAG--------GTAACAGAGAGCAACTTCTCTAGCTGGAAAGGGGTGCTACAGAAACTGGATGACGACATCACCATGCTAAGGAAAAGCTCTCCGGCCGGTGCATGGGCTTTGGAAATCAGCACAAGGCGCTGTCCAGTTTGCCACATCTCAGTTCCAAGAATCTTAGggatgatgaaaaatataaa--------------tatctccAAGCCCAG---TACCAAATGGAATCTAGTACTATCGTAATATTACAAATGCTTTGTGCAAATCAATAGTCAAACTCTGA-----GATGCCTTGTTTTAtgcaacatgtttttttttttttctgccat-gcATCTCTGAggcaaagggtttt----tttttttcatgtttgtatcAAGCATAAATTGATTTAGTCTAATTTTCCCTTGTACATGGAAAAAGAGTATACATGGCCTTTC

a score=13933
s chr3           149391240 934 + 160039680 ATGAATAGGATGTGATCCGATAGAATCCAACCTGGGACAAGTTTCCACTACCAACTGTAAATGAAGTAACTACAATTCCTTAGAACCTTTGAGAACATCCATAAGGTGGGCCTTGAAGTATGAATGCATTT-CATGTTGATTTATTTCAAAGAAACGTCACCTGAGCCCACAGCTGGAGGATACATTTTGGGTTTCTGCAAGATATTTTTAGGTTAAATCCAAGGCTAGAGTGTTTGAAAGATTAGC--------------------------------CTGCCATCT-TCTTGGTATATACT-GAGGAACCTGTGAGTGTGAGTCATTGGAAAATATAGGAATGACAACAGTAAACTAGAAAACTGGATGAACAACCCAGCATAGGTCT-AAACAAATTCTACATTCaattttatactttttatttttatactttttatttttaaaaaaatatttttaCTACTATTATTTTAGGGCACGGGCATTTTGTAGGGTTTCTAGCATGTTCCCAGAAATATTTGTGTATTATACCTACTTGTTTGAATAAGAGAGGTTGTAGAAGGGAAATCTACCACACCAGCCTAGATTTGATGTATTTTCCTTGCTACCTCCAGGGCTCCACACTGCCTCACTGGAGTGGCCAATCTAACTGTTCTTCAAAGGCAAGAAACAAGAAAGTCTGGATGACAAGCAGAGACAGGTACTGATGGTTTCCATAGTGACTATTATTTACTTGGGGATAGGAACTCATGCATTCGGAGTGCAGGGACGATGGGCCTGCATCC--GCATACCTGGTTTATGTGGTAGTGGTGACAGAACATGAAGCTTCCTCCATGTTAGGTGAGAGCTTTG----------TCAGGTGAGCCTCACCTTCAGCCTCTTGATGGATATTTTAATGAGGAAGGTGTAAGAAGACCTGCTGAGAATCCA-AGTCCATCCCTAGTGTCTCCTTTATTCAGAGGCAGAGAAGAAA
s HiC_scaffold_1 136034137 864 + 233722169 atgaagagatattTATATGATTGACTCCAACCATTTTTAAGAATC----ActgatttaaaaagaagcaaCTAAAATTCACTAGAgagtttaaaaat-tacataaggTTAAACTATAAATATTGAAGCATTTtcgtattattttatttcaaagggaaATTAGTTGAATTCACACTCTAAGTATGCAATTTGGGTTAATGCAAAATATTTCTATGTTAAATCGGAGACTAGAGAGTTGAAAAGATTAACAGAGAAATATCTGTGAATGTTGGGAAGTCCCACTGTGAAATATCTTAGTGAATATTAAAAGAGTATGTGAACTTGGGTCAGT-GAAAGCACAGAGACAGCAAACTAAAGCTGGAAAACTAGGGAGAAAACCTAGCATCTGTATAAAATAAGTTCTGCACTTAATTTTACA------------ATCCTTT-----------------GTTTTACTAC-----TCTCTGGCGACAGTGGTTTTGTAGAGTTTCTGGCATGTTCCTATAAATATTTGTGCAGTGAACCTGCTTCTTTGAataaaagaggt-----------------------------------------ttttttttttttttttaaagaacatatcTTGCCAAATTGGATTTGCTagtct-ttttttctccatagGCAAA-------------TGTAT------------CCTGTGCAGGTGAGCTCTGTAGTGAACA----GCTCATGGAGATGGTGGCT-ATGTATGAGGTTTTCCTGTCTCCATGGCTTACTCTCCAGCATTGGTGGTAAAT-TGGTAGTAAT----CAATTTAGTTTTTACTCAAAAGTGGGGAAGCACGATGCTTATGATGACCTGAAGATCCAGGCTTTAAAGATTTTCatagatattttaaagaataagacAGAAAAATACTTGTTGAGAAACAATACACAATCCTTATTG--TCCTTTATTCAGCAGAAGAGAAGGAA

a score=60896
s chr3           149394145 4226 + 160039680 [encoded data, 4540 characters]
s HiC_scaffold_1 136037267 4182 + 233722169 [encoded data, 4540 characters]

a score=79181
s chr3           149400077 3650 + 160039680 [encoded data, 4277 characters]
s HiC_scaffold_1 136041988 4061 + 233722169 [encoded data, 4277 characters]

a score=84586
s chr3           149404841 3193 + 160039680 GGCGGTCTCTCTGAGGTGGGAAGCTGTACAAGCTT-------ACACGTGTAGGTGC-TGGGTGACATCTCCTCTTCCATTCTTTGGCTTTTGTATTTTGGCTAGCTGCCACTGAAGTGAATGGCTTTCAAATTGCCTGAGAAGCGAGTGGGCACTTTTGTATAATTTTAGAACAAGGGAGCCGCTCTCAATCTTGTCTAAAGTGACTCAGACACTTGCCAGTTA-TTGAAGGGATTTATAACTTTGTCACCTATGTGCTAATT----------CAAAGCAA----AGGTGGAAACGCAAGGGC------TGCAAGAAATGGGGAGCATTCAAGCTCTG-TTAATGTGAACTTCCTTCTGAGTAACCGGTCC---TCCACAGGCCCCCAGTCAAACCTTACACGAACTTCCTAGGTTGTCATGCTGGTC-ACAGAGATCAAGGACTTTCACACAATTAATCCGGAATCA--TTTTTCCCCTTGGTACGTTTGCCAGAGAACCTGTCCATTAGGCAGGTTTTCTTTAATTGGACTTTGTATGTCCAAATTGCTTTTTCTCATCAGACTGTGCAATTTCTTTCTTTCTTTATTTTTTTGTATTTATCAGCCTTATCATAGCACATGTACAGGAGTG---------AGTGGCTCCTTTCCTCATC-TGGTAGGGAATTAACCCTAGTTCTGTACCCAGTACCGTCTTTTAAAATGAGGCTGTTTATCAT------------------------GTTTA--------GTCTTTGTAAATTTTGAAAGTTCCAAGAAATTAAAAAAGAATACTCCACACATTTAGT-------AAAATAGGAAAGAGGCT-AAAAGAACATTTCACAGAAATAAATAAAAACCACCTGGGCTGATAACTTCTATAAGTTCCAGACTTCTGCAGTTGTAAG------------------GGTCAAGTGTTAAAAGTCTAGAAGTTAAGATGTGAGGTGGAGACGACAGAGGCCACT--GAAGGCTCAAGGGAACACTGCCAAGTCATTTAGGCTCAAACTTTGACTAAATTTTAAATTGTCATAATCTGGTAATAAATATCTTCCAGATTTTATCTCTTGTTTTACTTCCTAAAGTTTTAGTTGGTTATGAAAATATATGCATAAACATAATATGTATTGCTTATTCAGAACCAAGTCTTTGAGTTGTAA--CAAAAATGGGGATATATTTTTTTCCTCCAGGATGAAGGACATG-TGATTAAAAAAAAATCCATGCCATTGCTATGTAATTAGCAAATAAATGGTTCTATT-----TTGCATCACAATCACATGACAAACTGTCTAATGAAAGCACCCCACCCCAC--------------------CCCTCTCACAAGAAAGCACAGCCTGTATTAGGAAGCAGAGAACTGCTCGCTCGCTGTGCTGAAATCTCACTA--TGTCTGCTGTTAGGGGGATGGCACATTGTACTT------------CATATGTCTAGGAAACCCGAGTCCCAGATTCTGCTAGTGGGGACTGAACTGTCCCCTGGTTATGAGAGACATTTCTTCTTCCAGTCTCCCCTCTCAAATCATT-TCAATCTTGTGGCTCCATCCCATTGATTTTGTCCCTGATTGTTATTTGATGGAAGTCGTAGGAATTC-TTTCAAGCTGCCACC-AAATCATTTTGGGAACTTGCTACTGAAATCTTAGACCGTCCCTTTTAATGTTGGTGGACTGGATAGAGCTCCTCTCAAATTCCCATTTGAATGATTCTCATTCTTCAGTATAAACAGTGTTGTTTATGTGTGTCTCAGCGG----TAAGCCCTTATGCTATTTTCTGGCCCTTCTGGGCATCGCTCAGAGCTGTGCATCCTCTGATAAAGTGG----GATGAGACACAG--ACACAGC-------TAGCTATGTGTTAATGAAATCAGAGATGTCATTTTGTATGTTTGA---AGTTCTGTTCTTTAAAAATCAAAACTTTTCAACACAGT---------------CAAACCTCAAGACAAGAGGAACGGAAGAAAGGGGTGTAGTGAACAGTATTCATGGAAGTGTTTCTCAGCAGACGCAAATGGAGCCTGAAGGGCCTAACTTAAGTTTGACAAAGACTCAGACTGTGCGAGGAGAAAATAACACAGAGGAGCAAGTAGGGGAATGAACAAGGGTTTTGCTTGTTTTTATTTTATCCTTGTCCCTGCTGCCTTCGTGTACATGGGGTCGGGGGCACACAGGCCAATATGTTTGGTAGGGGAGATGA-------------------------------CCCACCTTTCTA-GAAGCATCA-GAACTGGTCACCTCTGAGAGAACAGTAGAGAAGTAGGTGCCTGTGCAGTGTGATCTGATGTGGTAAACTGATGGGCTGTTCCTAGACT----CTTGTATCTGTTTCCAGCATAGCATGGATACCATGATG-----------------ACTGAA------GGacacacac---------acacacacacacacacacacacacacacacacacacacTGCTGGCAAGAGAGGTCTTTCCTTAATATCTTTTGA-CTAGATTTGTGGAGAGATTGGTTGAAGGAAGGCACATGGTCGGGGTACAGACAGGAGAAGCTTTTTAGAGAGTTTGAAATCAATAGCACTAACTGCATCCCTGCATCCCTGCACCCCTTGCATTCTTGCCCTCACTTACTCTTAAGACCTTGTTTTTCCTTCTCAGTTTACGCTGTGTGCTAACCTTTCCTGGTTCTTAGGTTAGGACCAAATGAAAACAAACAAGGAAGTTTATTCCACAAGACAACATGAATACAAACATCAGTGGTGGAACTGAACACCGCATAAACAAAGACATTCCCAGATAAGGATGACCACCCATTCTTCA--GCCCTTAACAGCTCCTGGTGACAAGCAGACCCCTATTCAGGGGCTGCGGAATGAAGCCTGTAGAGCTGCCTGGAGCCGAGAGTCTGC--TGTTAATAGCATTGCTTGCATCGCTAGAAGCCTAACCCTAGCTCTTGCGAGGCGATTTTGCTCGGCTGTGATGA-TTCTTTCCAGAACGATCGATAGTTATGAATATACAGCCATAAAAC-TCTTCAATGAAGAAAGAAA---ATATGGTTTAAAGTGTAATCAAAAATCAGCGTGACCATTTGAAACTCTCACG----TATTGCAGAGTG-TGCCATCGGTGCACTGAGAGGTCACACAGTTATATACTGTCTCTTAAA--CAGCGAATGCATAATAGCTTTTGCAACTCTG--------------AACAAATTCATAAATCAATGATGCATGCAGATGCATAACTTTAATTATGACTTCTGCTCAGATGGTTGGTTTATATAATGTAATTGTTTACTATTTCCCTCGACTACACTGGAAATGCTTGCTAGGG-AATCTCATATTTCATATGGTTCCCGTTAAAaaa
s HiC_scaffold_1 136048428 3328 + 233722169 GGCTGTCTCTgggaggtgagaagcagcacaggCTTTTGGAAaacatgtgtgtgtgcctgtgtgacaTCTCTGCTGCCATTCTCCGGCTTTTGTGTTTTGGCTACCTGCCACTGAAATGAATGGCTTTCAAACTGCTTGAAAAGTGAAATGGCACTTTTGTATAATTTTAGAACAAGGGAGCCACTCTTAATCTT-TTTCAACTGACTTAGACACTTGTCAGTTATTTGAAGGGGTTTATAACTTTGTCACCTATGTAGTCATTTAAGTTCTTACAAAGCAAGTACAGTCagtaaaagaaatactttttttgaCAGAAAGTGTAAGCACtaaaacattatttaatttgAACTAGATTCTGAGTATTCAGCTCCGTCCTCTAGGACTCAAGCCTGACTCCCCAT--ATTTGCTTGTTTTACCTGTTGGTTAAAAGACTTCAAGGGCTTTTGCACAATTAATCTGAAatcgttttttttttctttgtacatttgCTAAGCAACTGGTCTATTTAGTAGGATTCCTTTCATTTGGTTTAGTATTTCTAGATTGCTTCTTTTTATTGGacattaaaattcatattt-----------------tttatcatacttATCATAATACATGTAAAAGACTGTAGAATTGCATTGACTTATTT--TCAGCGTGGCTGGGGAGTAACTGTAACGTCTTAc---atattatattttgaaatgaaagtaTTTATAATCTTGgtatacatagagaaaaaaaagcttaaaGCCTACGTTTGTGTATACTTTGGAAGTTACCCACAGTTTAAAAA---------ACACTTCTGGTgaagcagaaaagagaaaagaggatgaaaaaaaagttccacataaataaataaaaaacatct-gGCTGACAACTTGTATAAGTTCCAGATTTCTgcaact-taagaaaaaaaaaaaaaagctagactAAGCGTTAAACCTCTGAAAGGCAAGGTTTGTAATGGAAATGTTAAGTGACCCTTAAAAGGCTTAAGAGGACATTGTCAAATAATTTAAGGTCAAGTTTTGACCAAGTTTTAAATTGTCATAATCTGGTAGGAAATATGTTCcagatttttaatgat-ttttattatgtaactTTGCATTTATTCATGAAAATTGATGA--AAATGTCATAGGCATTTTCCATTTAGAGCCATCCCTTTG-GCTGTAAGTTGATAAAATGAATACAATTTTTCTTTCCATGATAAAAGCTATGATGAT----ATAAAATTCATGTTACTTTTACAAAGTTACCATGTAATTCATCCTGTCTAAAATTCCTTTGTACTCAAGTTATACATAGTCATGTATAAACAAATGCCCACAtgtaaaaggaagagaaatttaacATTTCA-AAAAGATCTCAAAATTTGCCAGCTATCACAGCACtcctttattgtcattttttattttttgcaactaCCAATTTTT---------GCAGGCTGTACTTGTAtggttttcctatatttccaggtgACTTGGCTCTCA-ATTCTGCTGATAGAGTCCAAATTGTTCTATGAATAGAAAAGGAATTCTATCTTCAAATCTTTTCATCTGATTTGTCATCAATATC-CGATGTCAT-ATATTGATTTCTTCACTGATTGTTACTTAGATTACATTACAGCAATTCTTTTCAAATTGCTTCCAAAATGATTTTGGATACTCTTCACTAAGATCTTTGAAGATCCAGTTTAATCTTGGCatacagga-aaaatgttttacaaatattcACTTGAGTTACTCTCAAACCTCAGCCTATA-ACCTTTGTGCAGATTTGTCACACAGGCAAATAAGTACCTGTGGTATCGTCGGACTTGCTGAAGTAGGAGGGATTGCTGTATCATTTATGATAATGCAGCTTAGAAGAAAAATGGTAATATGGCATTGTTATAGCCATGCACCAATGAAATCAGATTGATTATACAGTAAGTTTcggttgtttattttctttaaaaattcattcttaacATCACAATCAAGTTTGCAACAggcaaatctcaaaagaaaaggaatgaaagaaaga------------------caCCAAAGTATTACACAGAACGTTCAAATGGCATTTGCAGTAATTATTTAAGGTTTGATACAAGTTGAGAAggtgcaaagaagaaa-aagataaaagagcaTAC----GAATGGA-------------------------ATTCTGGAAAGTGCTTTCTT----GACTGGGGAACGAGGGTCTAAAGG-----ATGtttgaaag----aattattttttcttttgtttgattttttattccCTCCCCACCTTTGTCTGGAGCATCACAAACTACTCACTCCCAGAGGCAAAGTAGAGAAGTAGATAAATGCATGGCCTGATCTGATATGGCAAATT----GGCTGTTcttatatttttacttaaatcTATTTCCAGTCAAGCACAGACATGCTGATGAGAAAATGTTTGGTTTTACTGAATCCAATGAAtgaatgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgc-----aaACAGGTCTCTCTTTAACAtctttttctttggatttttggAGTGCAAGGTGAAAGACAGAGGTGGGGTTGG----------GGAGAAGC-TTTTAATGACTTCAGAATTCTAAGCACTAACACTGTTGCTGCGTTCCTG--------ACATTCTTGTCATCACTTAGTCttaagtttccatttttctttctcaaggTACTCTGTTTACTAAGGTTTGCTGGTTCCCaggttaaaacaaaatgaaaacaaacagagCAGTTTATACCACAAGACAACATGAATAGCCAGAAAAGC-TTGTGACCCAACACCATATAAACAAAGAAACTCCCTGATAAGAATGACCACCCAATCCTGAGTGTGTTCAGCAGCACCTGGTAA-AAGCAGATGCCTCTTTAGTGGCTGGGGGATGAGGTCTGTGCAGAAGCCTGGAGCAAGATCTCCACCACGTTAATGGCTTTGC-TGCATTGATTGAAGCCTaaccccagctcttgggaggtaATTTTGCTTGGGTGCCATGATTTCTTTGCAAAGCAATCAATAGTTACGAATATACAATCATAAAACTttttcaatgaagaaaaaaatatatatgggtTAAAGTATAATCAAAATTCAGTGTGATCATCTGAATCTCTTATAGTATTACTGTAGATTACTTCCAGTAGTGTAGCAAAAGATCATGCagttgtattttatctcttaAAATCAGCGAATGCATAATAGCTTTTGCTACTTTGAATAAGAATCATTaaacaaattcataaatcaatgaagcatacagatgCAT-TCTTTAATTATCACTTCTGTTCAGATGGTTGGTTCATATAAtgcaattatttattatttctcagtATTACACTGCAAAGGCTTGGTCTGGCCATCTCATATTTCATCTTgtcctaattttaaaa

a score=30573
s chr3           149411552 1098 + 160039680 TAGTGATTTACTTTTAAATAGAAATACTTGGTATAAT-GTAAACCCAACTGTTTATGTGGATCCCCAGCAAGCTTTGTTTCCCAGGCTGAATCTTCAGGAACTCGAACTCTTCCTAACTTGGGGAGTTATATTCCTCTACAAAGTCTTCAGTT-GCAGTCTGTGCTGAACACATTTGCAG----ATCATTAGCCCCAGCCACCGTCTGCTTCACC------GGGAATCAGTTTTTA--TTGAATTCAAACTTCCAAAAGGAAAATATGCAAG-----CCTAA--TGTCAACTGATATTTGTTTTAGCTTTAGTTGGAACTGAAATCGATAGTGTTACTAGTCTTTGCTGAACTAATTGGTAGTAATTCTCCATCTGTGTTGATAGCATGTGAGCATGCACGTATATAACAGAGACACGAATGGATCTAACTCCCAGTGAGCTCCAGAAACGCATTTTGAACGGAAATCTAGAGCTATCTGGTGATAAAGTAACATAAG-GTAACATGGCTATCATGACCATTACGATTCTTAAGAACTAGAAAAAAAT------TAAACTGTTGCTTCCCACTTGAAGAGAGTACG-GTGCATAAG---AACAGAGATGCTCTCTGGGTTCAGCAAACTGGTGGCCGGAGTGAGAAAGTCTCAAGTGTTTAAGTGCCAGGCAATAAAGTCAAAGTATAAAACAGGCGGGTGTAAGAAACAAATCACAGCCTTC-----GCCCGGAGAAGAGCCCAGGTGATAAATCATTTT-GTTCCATCGGTCCTGCGTGAAGAGGCCAAAGAGATGACACCTCTTTAAATAAATCCAGAAGCCTTTCTCATTTAAACCATCTCTGTTGCTATATTTATTCTTTAAACTAAAATAGTTTTGTAGCCTTT---------------------------------CCATCTTTTTTTTTAACTCTCTAACAATCAATATTGAGTTTCC-TTCTGAATCTAAGA-TTTAATTTTTTACCCTCTCCAGGCTTGGAACTCAGCACCACTTTTACGCCAGCCCGTACTAATTTGAACCAACTTAAATGACACTTTTTAACGTGACTCCACTATTCTTTCAGGAATTCATAATCAGGAAATAATTATCTTCCCTGCTATTCATGGTACCCAATTTATCATTGTTTTCTTAGAACATGT
s HiC_scaffold_1 136058647 1134 + 233722169 TGATAACCTATTATTAAATACATACCCTCAGTACACTCTTACGTCCAGCCCTCTAGCTTAGCCCAAAGCAATCTTTGTTTTACAGATGCAGTATAAGGGAAACCTGACTCTCACTAACTTAGAAAGTCTTATTCCACCCACAGATGTCCGCTTCACAGTCTGAGTTGAACACATTTACATTAACAATGTTAAACACCATCACCTTCTATTTTTCCTTAGGAAAGAACTAGTTTTTTATTTGAATTCGTATTTCCtacaggaaaatatgaaaaaaacccctaaaatttcagtttatattttacttaaa---agttttatctaaaatagct---gttttaaatatttactgtagtTATCGCTTCTAA----CTATTAATATTGATGGATGTTTTGCAGACAGGTATGAAATAGCTACAAAAACCTACGTAACTTC-AGTGAGCTCCTTAAACACATTTTT--TGGAAATACAGAACCACCTACAAGTATGATCACATGAGTGTAACACACATAGCATTTccattaaaatgttaaagaaacagaataaagtaaatgGTAAACTGTTACTTCAAACTTGAAAGGAACCTGCTTTTACAAGGATAATATAAATGTTCTCTAGGTTGAGAAAACTGATATCTGAAG-GAAAAACCCTTAAGTGTTTAAGTGCCGggcaataaa---agaata-aaaatgcccttatataagaaacaaatcacaATTTTCTAAAAGCC----AAATAGCCCAGTGGATAAATCTTTTTTGTTCTGTCTGCCTTGTGTGAAGAGGCCAAAGAGATAACG--TTTTTAAATAAATCTAGAAGCTTTTCTCATTTAAACTATCTTTGCTGCGCTATTTATTCCAAGAACTAAAATAGTTCTGTggcctttaaaaaacaaaacaaaacaaaacaaagcaaaaccccaCCATTTTTTAT-----TCTAACAATCAATActgagtttcctttttaaatctaacattttaattttgtttcctctCCAGGTATAGGATTCAGAACAATTTTAAAACCAtgctatgtaattttaaaatatcttaaagcaTATATTTCATATCAACTCCA-TGTTATTTCTGGGGTATATTATCATGAAATTATTATCTTTTCTGCCATTCATTGT----AACTGCTCATTA---CCTGAGATCATGT

a score=70726
s chr3           149413166 4332 + 160039680 [encoded data, 5126 characters]
s HiC_scaffold_1 136059928 4827 + 233722169 [encoded data, 5126 characters]

a score=85512
s chr3           149421424 3541 + 160039680 AAATGTGTATTTTTAAAACATGAAAATATAAATCCACAAAG--TCCTGAACTCAGGTGCTTTTAAGTTTCAGATGAAATTCCACCTCCCTCCTCATTTTTGAAAA-CCAACTCGGTTGCTTTGATGTATTACTAGAAAAAATAAGGTGAAAGGCACATATGTTACAGGCACTCACTTCAATTTTGTATCGAAGTATTATTGTTATATCTTTAAATATATGT--CCTCAGAGAAGTCCAACATTTGGGGCAGTTTTCAAGCTTGTGTAAGTTTCAAAGTCCATGTAATCTTTCC----------AACAAGAGCTTTTATCTGAGATTAAA--------CCTTGAGAAGGTTTGGGCTTTATGTTTCTGAGACTCTTGAACCATGGATATCAGTAAACCTGGTGGATGTAAGCATCTTGggggctgggagtgcagctcaattggtaaagctcctgccaagcatgcatgagccactgggtttgatcttcagaacagtatgagtcgctgcggtggctcatacctggagtcccaacccttgagaggttaaccaggcaaatcagaagaccagagtcaccctagactatcgagcaagttcaaggacagtcagggctacatgagacctgatctcaaGCACACAGACTGACTGAATGACTGACTGAGTGAGTGAATATAAGTAAATAAACAAACTTGCCTCTCTAAGTATGTAAATAATGATTGGTTTATGAAAACCATCATTCAAATTCTATAGTATGTCTTGTGGATTATTTAATCTCCACCACAGAGGATATAATAATGCTATTGATTATGATAATATTACTTCTT----------TCACTGACAGTAACCCACTAGACTTCAGAGTCAAGGATAGACATGGTCTGCCTGTCATGTGAAAACAAAGGAGTTTGTGTGAGTACTTATTTCAGAATC---TGATCAGGCTTGGCTTG-----------GACAGTTCTCACCATAAAACACAT-----------------CCTTTAATGCAGAGCAGAACGTTAGGTCACACACCCTCCTTTCTG-------AATTCCATATCACAGGTACAAGACAGTAAACATACTCCTTAATCACAGAATCCATT-GTCACACCAAATTGTCAAGTGCAA-----AGAAGGGTCACGGAACAATTAGGCAGGTGTGCATTGATGGGTGTGGCACAGAGTCAG--------------GAAAGCCTCACATTGACAGGTGTACCCTAACCCGCCCAG-GCTTTCTAACGTTGAACGGC-TTGCTTAACTTATCCTC-AAGTCAATGTCTAATCAATGGGAGCATTTGCTCTGATCTAAATGCTCCCCCATAATCGTCGGGGATGTGATTGTAGGTTTTATATCATAATGCATACTAAGCACTCACAGCTGTAACATTTTTTTATGTTTAGTAAATGTCAATAAATCTGTGGCATGCGAAAGGGCACTGCTAACATGGCAGCTATTTGATTTCTATACTTTGTCAAATATATGGACCTCTTAATTCAATAACCCATAAAGGCAATGCTCACTGTGGTTTCCCACTCATGA-ACCTGACCTTTCGTTAATGTCAAACATCATTTTCAACTAGCAAGGGAAAAAAGCATATTATTTATATAAAGCTAATAATTATAT-GGGAAAATAAATACAGAGGAAGTGATCATGGAAAAGATGAGC----CCTTATTCATTTTTATCACTATGACTTGATATAATATTGTGTGTATCTTTTCT------CACAGTTCCAAAATATAAA-GAGAACATGCCATATCATCAAAGTGTCTAAATTTACCTAATCATTATTTCAGAGTCTAAGTAGTAACATGAATTTTTTTTCCCCAAAGCCATCCATTTTACTTGCAAATGTGAGATCCTTCTCAAAGTGACCTATTGTCTTGAGTTTTTATTCATGCATTTTTGTTGTTATCCAGGGTAGTTCTATGCTACCTGGATTTCTGTTTTTAAGAAGCAGCTAAACGGATTGTGAGTGTCCAGAAGTGAAGGGA---------GAAGAGCCTCCCTCCTTTCACCAGCTGGATACTTTGATTT-------GATGCAAACAAAAAAcgt--tcatcatcgaatatttattgagagcacacacgaggccaggcaccgctccaggcactgtgcagcagggaacTGTGTCT-AGAAACAGTTCCAGCATTTGCAGAATTTATGCTTGAGTCGTGTGTGAA---CTTATTAGCCAAATTAATCTGTTGTTAAACTTTCAAATGCTACCAGCGAGAGCTATTAATATGTGTTCCCAACTTCCTCAAAAGCATCCTTCGAGCCACGCTGCTTCCATTTTTTTTTCTCAGATGCTCGCAGCAGGTGCCGTTAAG-GTAGAAACTCAACACTTGCTTTGCACTTCTGTGAAATGCAGGTAGATGTCAGCCTCC-AACGTGGGAAGCCACTCGCTCCGAATGA-GACAAGGAGGTGTTTGTTGTTGAGAGAGGCTTCTGTTAGAAGCTGGAGCATATGGTGATTAAGTATG----GTGTTATCAGCCTTTGGACACATAGATGGTCATTACAGAGTGTGTAAGGAGAGATCCAggggcagggactattgctcagtggtgaagagcacttgctgttctcacagagggctcacgttcagttctcagcatccatacagcagctcaggactacctgtgactccatttccaaggagatcctacacccatttctgtctttctctgccacggtgtggatgtggtgcctttatttacatgcagacaaaacattcatacactaaaacaaaaatgaaTAAATATTTTAAAGGGAAGGATTTATTAATAACAATGTATTTCAAAGGCAGTTTACTTTTAAATAATAATACCTGTTTTAGGTACATCTAAAATTTCC--ATAATTAACCCCTGCAGTGAAGGTTGACTCTGATCAAGTGAGGATACCTTTT-TCCTTTGGGACTATAGCT-----AGATACATTTTCACTTTTGTGTGTTCCCAGCATCGGAACACTCTCCAAGGCAGAACAAGCCTGTGTGTGTTGATATAAGGATGTGAAGGATGTGTGACCTGttttttttttttttttttttAGT-----TTGATCT--------------GATGTCAGGTGTA--CCATTTGGTGACATGTGACCATTGTAGAAATCTGTTTGAATTAATCCCCATGGGGCCAGCATGTGAGATTATCTTTTGACCCC--ATTTTCCTGTAAAGCATTAATCTATTT-AGCTGTTTGGGGTCATCCTCATCATGATGATGGCAGATGAGATGCTAAGCACAGTTCGGACAACTCATATCTTAATAGCTGCTAATCTCACAAGCATCCCAGTTGACTGGCATGTGGCACATGCCAGATAGAAGCTAGAAAAAGCTCTCTTGGATGATGGAAAATATTGTTATTTATTTAAGAGCAATTTAATCAAAATAACAGTTTTATTTTCATTTCACCTTGACTCAA-ATTAAAAATTAAGCACCAGAAATATGCAAAG-GAATGCAAGG--------------GAGTTGTTAGATAACAGTCAGGAAAAAATAAAGGCAGAAATCACAATATTTCATGGAGTAATCATTACAGACTGATTACTAAAATTTTGGGTAAGGATGACTAGAAATATTTTATGGCACAAAACTGATGTTCCTTCTCTCTGACTCTCTTAAAAATTTTAAAATAACAATTGCTTGA
s HiC_scaffold_1 136067984 3080 + 233722169 aaacatatacttttaaaacatgaaaaaataaatctacaaaaaTTCCTGAACTCGGGTGTTTCCAAATTTCATATGAAATTCCACCTCCTTCCCCTTGTTTGAAAAACCAACTCTCTTGCTTTGATGTATTACTCGAGAAAATAAGGTGAAAGGCACATATGTTATGGGTATTTGGTCCAATTTCATATAAAAGTATTATcgttatacatttaaatatatgtttcCTCAGAGAAGTCTAACATTTTAGGTATATTTCAAGCTCGTCTAAGTTTCAAAGGCCATGTAATCATTCATGTAATGACAAACAAGTACATTTACCTGGGATTAAATTGTATTTCCATGAGGAG-TTTGAACTTACTATTTCTAAAACTCTTGAAAAAAGAAT--CACTAAATCTGATGAATATAA----------------------------ATTAGT-------------------------CCACTTG---------------CATAATGAATC--------------CACCTG--------------------------------ATTAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------tagtttatgaaaaatattatgaaaattctataaaat---ttatttgcttttaaatttctgaaaaagagattataatg-tgattcttacattggtagtttttttttttattatcaaatTTAGTGATAATAAAATAGTAGACTACAGAATTAAGGCCAGAAATTGT-GAAGTGTTCAGAGGAGACAAATGAGGTTGTGAGAGCACATATTCAAAACTCGagtgcatatatttattttgactcTTTCCAAGGTAGTTTTCAATATCAATCCTATGATGTGACTTTGAATGAATTTCAATAAAACTCATAGAGTTGGACCACAAGTTTTTCCCTTTgggaagatacttccatgaca----------gcaGGAAGCATCCTTGTGAATTACAGAATCAATTTGTTACATCAAAACACCAAGCACAACCTGGGAAAGAGT----------TTGTGCTGGGGTGCATATGAGAGAGTAATGTAGATACAACTTGTATTTAAGTCAACAGCTTCAC--TGACA--TGTGACTTAATTTTTTGGGTGCTTTCACAAGGTAAATATCCTTGTTTTACTTGTATTCCAAATTAATGTCTAATCAATTGGTGAATTTACTCTGATTAAAATATTCTCATATAATCTTCAGGGAAGTGATATTaggttttatatcataatgcatATTAAACACTCATAGCTTTAAC--TTTTTTATGTTTAGTAAATGTCAATAAATCTATGGCATGTAAAAGGGCACTGCTAACATGGTAGCTAGGAGATTTCTATACTTTGTCAAATATATGTACCTCTTAATTC-ATAATCCATAAAGGCAATACACATTGTGGTTTCCTATTCATGATACCTGACCTTTCTTTAATGTCAAACATCATTTTCCACTAGCaagggaaaaa--tatattatttatataaagcTAATAATTATTTGGGGAAAATAAATATAGAGGCAgtaatcatgaaaaaaatgagtGTAACATTGTT--TCATTATGCCTATGACTTGAtataaaattttctatatttctacTGAGTACCATGATTCCAAAttgtaaaggggaaaaaaatatacTCCCAAAGGGTCAAAATTTACCTAATGATTATTTCAAAG-CTAAATGGTAACATTATGTGTTT----CCAAAGCTACCCATTCTACTTGTAAATGTGAAATTCTTTTCTGAGTTATCTCTTATCTTTA----TTATTCATGGATAGTTCTTATTGTTCACGGCAGTTCTATgctatttgcattt---tattaaagACACA---AAATGGAGTAAGTGTATAGGGAAGTAAAGAgatcaaaaagtgaaaaatccTTCCCATTTTATCGGCTTGATACTTTGGTTTTGACGTAGATGTGAAGTAAAATCCTCAttatcatcaaatatttattgagagcataaaataaaccaggcacagtgcCAGGCACTATG-gctatgcaaatatatttaagaagtGGTTCCAGCATGTGCccaatttataatttcattatgTATATAGTCCTTATGAACCAAACTAATCTGTTGTTCAATTTTAAA---TTAACAGTGACATCTATTAATACATGTGCTGAGC-GCCTCAGAAACATCTTTTGAGTAAC---ACTTACA---TATTTTCTCAAGTGCACATAGCAGGTGTCAATAAATGCAGACCTTAAACACTT-TTTTGCACTTCTACAAGGTGC----AGATGTCAGCCTCAGAAGGTGTGAAACTGTTCCTTCCAGGCCATGATTAGAATACATTTGTTGTTGACTACTGCATCTGTTGGCAGCTGGTAGTAATGGTGATTAGGAATGCCATGTGTTAATAGCTTTTGTGTACTTAGATGATAAT---------------------------GGCATGGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGGAATGATCCATTAATATCACTAAATTTTAAAGGTATTCCAGTTTAACATACTAATTCCTTACCTAAGAACACCCAAGTTCTCCAGATGACTAATGCCTG-AACGCACTTTGACTCTGACCAAGAGA-GATACATTGGATATTTTTGGATTGTAGTTATCGAAGCTGCATT-----CTTTGTATCTTC------------------TCAAGGAAG--CATGCATATATGTGAACATAAAA-----------ACTTGTGGCCTCCTTTTTCTTCCATCAAATGTAACCCCCATAGATATCAAGAGCCAGGCAGTATGTCACATGTATTTCATTCAGTGCCATGTGACAATTTTAGAAACTGATTTGAATTAATCCCAATTGGGTCAGCATTTGATATTATCTTCttatcccttttttttctgtaaaacagcaacatatttcagatatttttggtCATTCTCATCAT-------GCTGATGAGATGCTA-----AGTCAGGAGAATTCATAACTTAATAGATTTTAATCTCACAATGA-CCTGGTCGATTACCACGTGGCATGTGACagctagaaat--gaaaaaagattcttgaatgatcaaaaatattg----ttatttaGGCACAATTTAATCAAAGTA--AGTATTACTTCTATTTTACCTTGATTCAGCCTtaaaaaatgatcatga-aaacatgaaaaacaaatgcAAGATATCCTCATTGGCTGAAATGTCAGATAACAATTATTCCATAACATTCTCAGTTACTAGATTACTCTATTAATGTACCAGTA-------ACTAC-AGTATTATAGGTGAGGCTGACTATGAGCAGGTGATGATAGGAAaccaataatttttctttctgattgtctt-aagctttgaaaataacaattgcTTAA

a score=106436
s chr3           149425378 2699 + 160039680 TTAGGAGTAATCTAGTGA-----TATTTGTCAAGGATTCCTCCCTTTTGAAGCCTACTGTAAAGACAAGGTGGTCGTCAATTGCTTCTGTAAAGGGAGAA----------GGTTTGAAGTCAGTG-TGTCTTCGAAGTGTTTCTGCTTGTATTTGCAAGGAATGAAAGCAAGCCTGTTCTCTGGGCACCCCTTTCTAAAAGCCTGTTTCTGTCTTTTGCCCTCTTGAGCCTGCAGGTTGGTTTCAAAGAGACGATTTTCACCAGCCTGGTGTAAGGTCAGCTGCAG-CTGTCCAGTAACTT-------TGAGGGTAATTGGGGCCTGAGAAAGACAATAGCTGAAGAAGCAGCCAATGGGCTTTATC--AACTGACCCGGGATTGAGCACCAGAGCGACCCCCACATTTTAAACAGTCTTTAGTATTGATCCCAAACTCTTTCAAAGTTTAACACCGGGCGATGCTGTACACAAGAGCAAAGCCCTGGCACACTCGTGGTGTAACATACAGAGGGCGTGATATTTGATTATATCTAAGCTTCTT-AAATGCCAAGAGGAATCTGGAGAAGG-TATTG-ATATTGACTTTTAAAAGGTCCACATAGATAAAATTAATAAATCTTATTAAAGTTTATTTTAGGGATATTGATTTTAAAGTTGAAATGCACCCACAAAGAAAGTCCCATGATAAGGG-TAATGTGTAAATTCCTTGAAAACCCATAGTTACTGTAATTATACGGAGCATTTTACAAGCAATGAGGGACTGCTTGGGATAGACGACTGAAATTTAATCAGTTTCTGGCATAGGCTGCCTTCCTTTCCCACCACGGATTTCCGACACAGG----------CGGACCTGTTCTGTGACTGAACCTCACTTATCACATCGGCTCTGTCTTTGACCGCTTTCCAAAAGAAAGGCTTCCTCAGATCTCCCCAAAAGATAAAGGAGCAGGGTGGTTTTTCTGAGTGGTGTGTACCCTTCTCCCATCCCTCGCCAGCCATTCTCAGCAAACTTAATTCAGTTCTCCAGCCTAGCTTTTACACTCCCAAGAAACAGTCTGTATTGCATGCATAAAACATGGGGGTATTAACGCTGCCGCGGTAGAGCATCCGATAAGGAAAAAGGCCTCGCCTTTATGCTCTTAGGGAGGAAGTGTTTGCCCGGAGAACCTCTTTCAAAAACAACTCATTTCATTTCTAAGCATTTCCAGTTTCATTTTCATTGAGTGGTGTGGGCCTGCCAGTCTTATGAAGAGAAACCTGAGTTTGATGGAGTTTCTTTGAAAGCAAGGGGGAAGTGGCGAAGCAATCAGCGGCGATAAGTGTGGAAATTAAGCTACCTCTAGAGTTCATGTTTTACAAGGTCAAAATCGATCAGTTTATCTCCCAGCTGATTTAAAACCTATCTGATTATTTCTGATGGCTTAAGATATAACTGTCCAGAAATCTAAATAGAATTTTTAGACTTACCTTTACT--AAAGCCTTACGAACTGAAGACAGGGCTG-CTGGCTTGATTTCCATCCTTTTTTGCTGTTGTGAAAAACAAGAAC----TCCCAAGGTACCATTTGTTCTTTATATTTTTATTACAATGCTTAATAAGTCTCCATCCCTAGTGAAAATTAATGTTTTTTTGTTTTTGTttttattttattttattttattttattttaGCTCATTTAAACTCTGGTTCTTTGAACATAGTGACACTGCTGTGTGACATCTGAGTCCCAGAGATCAATTGATAGCTGGTAAAGACCATGAAGAATGGCCCATTAAGGCAGTTAGTATATGACTAATAACAAGGTTTGTGTTTAGTGTGGAGATTTATCAACTAGATGGAGCACTTATGCCTGGGACCCAGATGAAAATCTACTTGAACCAACTTATTAATAAATCAGAGCACCATTTTTAACAGACCATCTTATTTGAAAAATAAAAACTCCAGATATATTAAAAT----TGAGCTCGGATGAGATAGGTACCGACCCTGAACCACAACCATGAAATGTACACTCAGAGCCTCAGATTAAAGTCTGTAGAAAGAACAGTAAGTTTTTACATTTTTTCTTTTTCTGTTTTTCTGAGGGCTAGTTAGCATCCTTTGCCTGAGGCCTCTGTCTCTGGCAAGCAGGCTACATCTGGGCCACAGAACTGATTCTCTTTCTCAGTCTGCATAAGATGTAATCACACATTAAGATAATATGTCCAACTTAGAGCTACCACCTGTTTGTAGCTATAGTAAGGACCACAGTAAGGAATCTGCTTAAATATCCCAAGC-------TATTTTTAGAATAGAGAAATAAAGTATTTTCAATAAAGAGGTAGGGAAATGTCCTTCCAGATATCTAG-GAT-------CTCAGCAAGATTTTCCAGGCCTCA-AAAAATTATCAGACTGTCTCATCCTCAGTGGGATCTGAA----------------------GTGAGTCAAAAAGTTGGTCCCAGACGATGACAGATTTAATCATTATCATCTC-TATGACAATGCCAATCAGTGAGTATTGATTATTTGGGGGCGATACATTGAGAAGAATATTTCAGGCTCAGTGTATGCACAGGAAGAAAAAAAAGCCACAGCAAATTAGTGACTTTTATgtggtggtggtggtggtggtggaggtggtgCGATTATGAGAGAGCCCTGAGCTTCTAACTTCTGCAGCCCATTGCTGGTATAGGGTGGACCTC--TCTATTCAGGAGACTAAGGGAGGAATGTGTGCAAGTTAAAAACAAACAAACAGACAAAAAC
s HiC_scaffold_1 136073152 2650 + 233722169 TTAGTACTAAGCCACTGAGTGGGTAGTTGGCAGggattctttccttttgaagcttACTGTAAAGAAATTGTGGCATTCAGTCtccttcaaaaaggaaaaaaaaaaaaaacggtttGAAATTTGTGGTAtcctataaata-----------------aatgaatggcaGTAGTCTTGTTCTCTGGAactctcttttaaaaaac--atttttgttttttgtccccT-GAACCTATAGGTTGATT-CAAAGAAGCCAGTTTTGCCACGGCAGGGCAGGGTCAACTGAGGGCTGTCAGACTGCTTCCCCCTTTTATTCAAATCTAGCACTGAGCAAGATAATAGCTCAAGAAGCAACTAATGAGCCTCATTCGAATTG--CTGAGATCATGTATCAGGATGACCTATAGGTTTGAAACAGTCTTTAGTATTGATTCCCAACTCTTTCAAAGTTTAGAATGGGGCTACGTTGTATACAAGAGCAAAGTCATAGAACAATGATCATATAACGTACAGAGGGCATGACATTTGATTATATCTAAGCTTCTTCAAATGCCAAGAGGAATCTGGAGAAAGATATTGGATATTGACTTTTAAAAGGTCCAcatagataaaattaataaatcttaTTAAAGTTTATCTTAGAGATATTGATTTTAAAGTTGAAATGCACCCACAAAGAAAGTCCCATGATAAAAGCTAATGTGTAAATTCCTTTAAAACCTGTAGTTACTGTAATTATATGGAGCATTTTACAAGCAACCAGGGACTGCTTTGGATAGATGACTGAAATTTAATCAGTTTCTGGCACAGGCTGCCTTTCTTTCCCACCTCGAATTTCCAAAGCAGGATTTCTAGGGCAGACCTGTTTAGAGCGTGAACCTTTATTATCACCTTTGATCTGCCTTTGAGCACTTTCTAAA-GTAAGGCTTCCCTGGATGGCCT-AGAAGATAAAGGGGTGGGATGATGTTTCTTAGCAGCACATGTCCTTC----ATACTGTCCCGTTCATTCTCAGCAAACTTAATTCAGCTCTACAGTCTGGGTTTTATAATCCCATGGAGCATTATGTATGAAATGTGCAAGACCTCTGAGCGCTAATGTTGCCACCAGAGATTATCAGATAAAGAAGTAGGCATCTCCTTTGTACTCTTAGGACATAAGAGTTTGCCCTGA--ACCTCTTTAAAAATCAACTCATTTCATCTCTAAGCAGCCtggattttatttgtattaagtGGTCTACACCCGCCAGTCGC-TGAAGGGAAATTGGAGTTTGATGTAGTTTTT---AACGCAAGGAGGAAGTGGGAAAATAATCACAAATGATAAATGTGGAAATTAATCTACCTCTGGAGTTTATGTTTTACCAGTTCAAAATCGATCAGTTTATCTCCCAGCTGATGTAAAACATATCTGATTATTTTTGATGGTTCATGTTGTAATCATCTGAAAGTCTGAATAGAATTCTTGGCCTTACCTTTTATTAAAAACCTTAGGAGCTGGTGACATAACTGTCTGGATTGATTACAGTA-----TTGCAattgtggagaaaaaaatcacagcccTAAGTAACTGCTTTTTGTTCACATCTTCATTATGGTACATAATACATTTCTGTCTCTAGAGCAAAttaatagtttttcttcttt------------------------ttcttgtggtTCGCTTAAATTTAGGTTCTTTGAACAAAGCCGCATTGCAGTGCGACATCTGAGTCCTAGAGATCAATTGATAGTTGTTAAAGATCGTGAAGAATGGTCTATTAAAACAGTTAGTATATGACAAATAACAACGTTTGTGTTTAGTGTGGAAATTCATCAACTAGACAGAGCACTTATTCCTGAGACTCGAATGAAAGTCTGCTTGAACCAACTTATTAATCAGTCAGTGCCCTGGTCTTAATAGACTGTCTTATT-------AAAGAGCTCTAGATATATTAAAATTGGATGAACTCTGATGTGATAGGGACTATCCCTGAACCACAATCGTAAAGCACAGAATTATTACTGGAGATGAATgtgtatggaaagaaaaataagctttt-tgttggtttgctttttgctttt-tgaggacTAGATCCAATCA--AGCACGGGGTCCTTCTT-----------GGCT-CTTCT-GATTATGTGACT--TTTCATTCCCCATCCTTCATAAGGTGTAATCAAACACAAAGATATTATG------ATACATTTTCCACCTATCTCT-------GTATAGACCCCACTAAAGGATCTTACCAAATttacatagcttttttttttttttaagggcgGAAAATGAACTACTATCAATGAGAGTAAAAGCAAAGATTATTCAGGGTGGCAAGTGGTGTGAATGCTCAGTAAGATTCTCTGAGCATAACGGGAATCACCGCAGATTCGCATTCCCAGTGGAGTCTGTGATGGTAGAGGCCCTTAAGAGCTGTAAGTCATGGGATTGAACAGGGATGACAACTGAGCTGAG-AGTATCTTCTCAAATGACAGTGCCAATCAGTAGATATTGATTGTCTGGGAGTGCTGGGATGAGAAGGATGCTGGAGGCTACGTTTAAGTACAGCAAG-AAAGCAAGACACAGTAAATTAGCAACTT-----------------TGCTTGTGAAG-----ACTATTGCTAGAGAACTCTTGGCTTCTAACCTTTGCAGCGCATTTCTCGCGCAGGGCTGACCTTCACTTGTCTGGGA-------GGAAGAGCATGTGCATATCAGGAGT-------CAGCCAGAAAC

a score=146612
s chr3           149430212 7515 + 160039680 [encoded data, 8176 characters]
s HiC_scaffold_1 136076716 7319 + 233722169 [encoded data, 8176 characters]

a score=290027
s chr3           149438294 9686 + 160039680 [encoded data, 10289 characters]
s HiC_scaffold_1 136084046 9791 + 233722169 [encoded data, 10289 characters]

a score=68691
s chr3           149449520 2089 + 160039680 AGCACATATGTAAGT--GAGTTTAAATGACAAGGAATGCTGTCTCCAGCAAGAAAAATTAGGAGCAAGGACCAATTAGCTCTTGGATTTCG--GTTCTTCTGAACTGGAATACTTCGGTTGCTTGCAAAGTGTTTGGTC---CTATTCTTTACTCAAAGTGCTCTATGGCCCATTCATATATGAATTAAAATTAATTGTGTTTGGAGACTTTGGGTGTAGCAAATCAGGGCGGGCATCACTGCTGGAGCCCTGGAACTCCTTTAGCATTGAAAAACTACAGCACTTTGAAATCCTTAGTGAGATGGATTACCAGCATAAATGCCATTAATACTAATGATGGTTAATAATTGGAAAATCATATTTATAAAAACAGCAATGATAATAAAGTCAAACCAGCTAGCACACCTCCCAGTTCTAATCCAAAATGCCACATTAGAGGCTCTCCATTCTCTTTTATTGCCCGAATCTTAGTTATTTTGACATATTTATCCAGAAATTATTGAAGTTTCTACACTTAACCCTGAGATGACAAATTGCTTCTTGTAAATATTACGCTTACAGTAAAATTCACTATAAGATAAATGATTATAGAGATATGGGACCCAGAAGTGGGAAATGTGTTTGAATTATAATAAGGACTGGCTCAA-CTTAAAACCAATTAATAACTGTCATTTTCTCACAAACACAG-GACAAGAAACACCTCCAGAAAGGGCACCTGAACCATGAAAGGTTGAAAAACATACTGATGAACATATTGACTGGATCCATTAGGATTCTTTCAAATCACCTTCTGATAACGGT-CTCCTTGCCACCATCCTGTCAT---------ATGGAGGCAGAAAGAATGGT----TTAgggtctggacagatgggtctata-gttaacaacatttactattcttgtagaggaccaggtttggatcccag-cacccatgtggcagctcac-aaccattggaaactatagtttc---------agggcatgtgacactt---ctcaaatctgtgggcatcaaacatataaatggcacaTGTGCCTATCTATGTTCAGGCCACAGAATCAGGAAGGCTCTAGGTAATGAATAAGTACATTGGAATTTAAAAAACGTGTTCCTTTCTATTTAGCATAGAACAAGTTTTGCATGGAGTTCCTTCCAATC---------AACTCT-----GTGGTCTGAGCTTTAGTCTGTCAGAGAACTGA----CTCTGCTATTTTATTTCATAAAGTTAATTAATTTGGGGGAAAACTC--ATATTCTTCCACTCATGGATATTCTTGTTGTCTGCTTTGCAACAGAT---AGTTCTTAGCAATCAACAAGTCCTACTTGAAGAAAAACCAACTGTTCCTT------CTATTTCCTTCACCAGACAAAAACTGGGTGGACATTCT-----ATCCTTAGACCTC--AGATTGCTCCTCACTATGCCTCCGACTCCTGGATGTTCTTATTTCTGGAA-AATAT---------AGCAAAGAATCCCTTAGCAATTACTCATGCTGAACTGTTTCTCAGATCACTCCTTTGTATCCACATCTCTAGTGTGTTCAGTACAAAACACAGGCACACTACCCTACACAGAAATGAGGAATGCAATAGCCCCATTAGACTAACTGCAACAGACAGGCCAGCAGCACAAACAACACGTTGACACACTTAGATCAATACGCCTCTGGAAGGTGTTCAGGTTCAGTGCACAAAGAGGTTCACATTAAGGAGAATTTGAAAGATGTAAGAGAATCTAACAGGAGCTGGCTGGGAGGTAGTGTGAATTCCTTACGGTGTATGGAGAAAC--AGAAAAATGGATTGTGCTTCAAGAATGGAGTCATTAGTGAAAATGACTAGACACTGGGATTTTGAATTGAATCCTTATCTCTTCCACCAGGACACTCCTATGTTT-TACTGC-AAAGGGATAAAAATAAGATATTGTATTCTGTTTGCATTTGCAAAACACTGGAAGTTCTTAAGGCAATACCATTGTTTCACAATAGGGGTCCACCTTCATCAAGGGGTCCACCTTCATCAAGGAGTTCTTTGCATTTGGATTCTACTGTAGGGCGTTAGTGAAAAAAAAAAAAAAGAAACCCGTTGAAAGATTTTAGTTCCTGTAAGTCACTTCTAAAGAGATAC-TAGTGACTTAT
s HiC_scaffold_1 136094527 1999 + 233722169 AACACGCATGTACATCCATGTCTAAATGGCCAGGAGTGGTGTTCCTGGCGAGGAAAG--------GGGGTTCTAATACCTGTTAGATTAGGAAGTTCT----------Aagatttca---------aaattgttttggaaAACAATTCTCTAACCAAAAG---CGATG---------TATATAAATTAAAGTTAATCGTGTTTAGAGACTTGGGGTGCAGCAAATCAGAGTGGAAATCACTGCTGGAGCCCAGGAACTCATTTAGCATTGAAAAAATACAGCACTTTGAAATCCTCAGTGAGACGGATTACCAGCATTAACGCCATTAATACTAATGATGGTTAATAATtggaaaatcatatttataaaaacaataatga-aatagAGTTAAACTAGATAGCAAACCACCCAACTCTATTATAAAATGCTGTATTATAAACTTCCCACTCTCTTCTGTTGCTTGAATCTTAGTTATTTTGACATATTTACCCAGAAAATATTGAAGCTTCTAAACTTAACCTAGGAATGACAAATTGCTTCTTGCAACTGTTATGCTTACAGTAAAACTCACTACAAGATAAATGATTACAGAGATATTTGACCCAGTAGTGGGAAGTATATTTGAATTCTAATAAGGACAGATTTAAGCTTAAAAACAATTAATAACTGTCAGTTTCTCATAAACACAATGACAAGTAAAACCTCCACAAAGGGCACCCAAACCACCAATGattaaaaattatgttcattAACAGAATTACTGAATCCCTTAAGGTCCTTTCACATGGTCTTTGGATTATAGTAATCTCCACCGACCTTCTGCTAGAATGCCTCAACGGAGGTGCAGAGAGTGGTTTCATTCAAGATTGAACTCTTcctccaatattttaaaattacttgtcaTTCC-------------ACTTCAACCACAGAAATTCACATTTTGGCTTTCTCTTCAAGAAAAACTGCAGTTTTGCAGAAAAAAGTGCATTTGGCTCATAGACTCTAG-CTGGCGGCATC----------------------TCCATCC-TTTTCTGCTAGGAGGAGCAGGACTCCCCTAAG-----------------------------------------------------GCACAAAGTTTGTTTTGAGTTCCCTTTGGTCGAGATTGTGAGCTCTGACTGGTGGTCTACAGTTTAAACTGTCCGAATTCTTAAGTCTTCCATCTTTTCCTTTCACAGACTTGGT---CTCCAGGGAAATCTCTGTGACTCTTTTGACTTTACCTCCCCTCAGTGTCTCCTTCACAGCAGACACAAGTTCCTAAAAGCCTGCAGTTTTTACGTGAA-ACAAAGAAACTCTTCCTTTCTTAGTCCTCTCTTTCATTGAAAAAGAACAGGGCTCATGATCTCCCACAGCCATAAGACTCATAGATGGCGCCTCACC---TCTTTAATTCCTAGATGTTCTTCTTCTGGGAATAATATCCTTTGAAGAGCTAAAAGTTCTACAGGAGTTGTTCTCCCTGCATGGCTTCTCTGATTACTCTTTTGTTTTCACAGCTCTGGTACACTGACTGCAAAACATAAGCGCATCACCCAACACAGAATTGAATAGTCCAATAGACTTATTAGACTAACTGCAACAGACAGACAAGCAGCACAAACAACACGCTGATGCATTTAGATCAATAAGGCTCTGGAAGACGTTCAGGTCCAGCGCTGAAA---GTTCACAGTAAGGAGGATTTGAAAGGTGT--GAGAGTCTAAAAGGAGCTTGCTGCTAGGTTGTGCGAATTCTTTGTGGTatacagaaaagcaaagaaaaatggatGGAGTTTTAGGAATGAAGTCATTAGTGAAAATGTTTGGGCACTGGGATTTTAAATTCAATTCTTATCTCCATCACCAAGACTCTTACACATTTCCACTGCAAAAGGGATAATAACAAGCTACTGTGGTCTG------TTTCCAAAACATTACAAGTTTTCCAGAAAA-ATGTTAGTTTCACAATAGAAGTACATTTTCATTAGTGAGTGC-------------------------TTGAATTCTACTCT-----GATTATCACTAAAGAAGGAGAGAATTCCCTGAAAAAACATAGATTTCCACAAGGCATTCCTAAAGAGATCCAAAGTGAATTAT

a score=143605
s chr3           149452778 7222 + 160039680 [encoded data, 8045 characters]
s HiC_scaffold_1 136097401 7382 + 233722169 [encoded data, 8045 characters]

a score=91292
s chr3           149461727 2374 + 160039680 ATAACTCACT----CGGTTTCCTAGATTTTTAATTCTTAACTCTAAAAGAGGCA----TTTGTTGGCTTAGCTCAGTAATGCTGAATCACTAACACGCCTACAGACTTCCTGTATTTTAAACAGCAGTCCAGTCTGAGTTAAATCAGCCATCTCTGGGAAAGCAAAGAGAA----ACCATAGAGTCCTTCTGTAGTTCACACAGCAGGAGC-AGGGAGAGTCCATTTCCATTGGCTTAAGGCACAGGTG--AAAGTCAGTAGTGCAGGAAAGG---------------TCAGGTACCATTTTATAAATCTAATGTGGACAGAAGATCAGTATGGACAC-------TGGCAAC-AGGTCTCTACTTCGAGCTTACAAACTCCCTTAATTTCCAGCCTTTTTAAAACACCATTGACTTGGTGTTGGGCACATTGGAATGGGTCCTGT--------------GATGACAAGAGTCATGGAGTCTCTACTCTGTATCTAAACATGAGGAATTGTGTGTTGTCAACATGACTGAATTGGTCAGTATTGTTTGTCACAGCAGGGCCCCACAATCAATCCAGAAATGCCCCAGTCCTTCTGCAATCAGGATTGATTACTCTGGAAGCCAGCTGTGGCTCATCTGTTTTATGGCAGATGGC--CAGTCTTTCATTCAATTGAGAAAAGTAATTTGTCACCTAAACCTCAAATGCTGCCTTGACAGCATTTTACTTTCAAAGGCACAGGGAGGGTAAATGACCACAGGGAAGCCACCACAGAGTTGTGTGACCCATCCCCGAGTCTCCTCTCTG---ATGCAGTGGTAAAGGAAGGGCTGCTGGCGCCCAATTCTAAAGAGCCTTTGCATAAGCAAACTTTAACGAGTCCCATTGGACGGTCTGTCTGGTCC--TTG-CTTGCACACATATGACTTATGTCTGGGCTCACAGCTTAAGAAGTCTGTGGGACTCCCCCT----GGCAAATGTAACTCCCTAGTCATTCTAATGCAATATAATAATATACAAGGCTTCTCACAAATGGTTTTATTGTCATAGCTATTGCTTCCCAATTTTGATAAGAATTTACGTTTCCATGCAAAATGACTTTATTCATTTTGGCAATAGAGAAAAAAAATAGATGAAATAGAAGTTTGATTTAAAAG--TCTGTTTTGCTCAAGATAAGCTGGCAAAAAGACATTTGTTGAAGCTATTAAGAGCTCTGTTTTCAAAAGCTCCCTGCTAATTTGAACCCTATCAAAGGAACACACAC--ATGTGCACCCATTTTTCAGCACATATCAGAAAACATGAATAATTGAAGTGCTTTTTGTGTCTCAGATTTTCATTAAATACAACTCAAATGCCCATCTTGGACTTCAGGATTCGGCCAGGTTTACTTTAGCAAAATAAATTAAAGAAATAATGGATCAAATAAAGCTTTCCATCAGAAAATCCACACAAGCTGAGGGCtttttaaaaaaaattaaataaaaataaGTTTAAGGAAAATAATAGAATTCTCAGACTTCTCTAGGCCCATTCTTCCACGGATTTTGTGAGTATGTTATTTTGGTCATTCA-GGAATTGTTCCTCACTGCACAAAGAAGACACGATTGGTAATTTTTCTAATGAGGCCCACAAAGAACAAAAA-------------GGAGAAAGTCAGAAAATCTTGCTAAATTAATTGCTGCTGGTAAACTGTGAAAAGAAAACTAGAGAAGACAATAAATGGTGCTAAGTTTTCAAGAAGCAAACTCAATCCAAGCCTAGAGTACTGTTGGATGCTCTGTGAATGATACAGAAGTCACAGGTCCTAGTGAGGGGTGGCACTATGCATGCTGGCTGGTGGTAGGTAACTTCTCCATGGTTTGATTTAAAGGAGAATGCATTATGAATCTGGAATTTGTGGATGACC-TGGAATGTAGACTACTAGGGAAGATGGAGCAATTTATGTGGTTAGGTAACCTTGAATTCTGAG--TTCTACAAACTCGACCAGACTTCAGAGAGCCAGAGTCTTGTTTTATTACTGTGTCCTTCATCTGCAACAAAAGGAAGTGGTCATGTTCATCAGAAA--TTTGTAGCGGATGGCAGAGCAGCAAAGATCAATAGGTTAATATTTATAAACCACAATTCAGGTGATTTAAAGTCTACAGATGCATAAAATAAACATTATGCTAATGATGACCTATTGATCATAAAAAAATTACTTTGCTCTAAGGTAACACCTTCCATTTATTCTCTAGAATGTATGCATGCTCGTCTCCAATAGATATTAAGTCATATTCCTAATTATCATGTTATAACCCTAAGACTAATGTGGAAGGCAGAGACCTCAATACACTTTCGGGAGGAATTATGATTATTTATTATTACCAAAGCTTTGTACAGGAGGCACAGAAAAGAAGAAAACTACCAGCGATGCTCTGTCAGACGAGG--AAGCATTTATAAA
s HiC_scaffold_1 136105648 2330 + 233722169 ATAGCTCACTAAGTCGGCAAACCAGATTCTCAAgtccaaacttaaaaaaaaggagaattttgTTGGCTTAGACCAA-AGTCCTAAAGCATTACAAAGCCTGTTAACCAC-------TCTACCAGGTATTCACTCT------------TCatc------aagacaaagaaaatatgatGTCAAAGTCC----ACAGTTCACACAGTGAGAACTAGGAAAAGTCTACTCCCATTAG---GAGGTGCAAGTACAGAAATCCCTATT-CACGATAGAAATCCCTATTAAACTTGGGTTTCAAATTTACTGATACGATATAGATATACTCTCAGTACTGGTGTGTCAGGGTGGTAATTAGTTCTCTAAATCTAGTTTAAGGATGTTCTGAACTTTTAGGTTTT------CACTGTTGATGGAATGTT-------TTGGAGGAGTTccagctccttccttccttcaatgACACAAA--GTAGAGTCT-------GTATCTAAACATGAGAAATAACTTGTTGTCAACAGGAATGAATTGGTCAGTATTGTCTGTCACAACAGGTCCTCACAATCAATCTGCAGGTGCCGTGGCACTTCTGCAATCAGGATTGATGGATACGAAAGCCAGCTGTGGCTCATCTATTTCATTGCAGATGGCCACAGCCCTTGATTCCATTGAGAAAAGTAATTTGTCTCCCAAAACTCAAATGCCGCCTTCCCAGTATTTTACTTTCAAAGACA-AGGGAGGATAAATGACCATATGGAGCTGAAAGTGAATTTGTCGAACCTGTTACCGAGTGTTTTTTCTGGGCAGCAAGTGATGAAATGAGGGTTGCTGGTTCCAAGTTCTAAAGCTCCTttgcataaataaatttcattgtgTTTAACTGGACATAATTTTTAGTGCATTTGCCTTGCATATATCTGACTTGTGTCCGGGTTCACAGCTTCAGAAATCTGTGTAACCCCATGTACAAGACAAATGGTTCATCCCAATCataataatgtaatataataatgTATTAAGCTTCTAGCAAATGGTCTTATTGTTATACTTATTGCTTCGCAA-TTTGATAAGCACTTACGTTACCATGCAAAATTACTTTATTCATTTcagtaataaag-aaagaaatagatgaaatagAAGTTTGATTTAAAAGTCTCTGTTTTGCCCAAGATAAGCTGGTAAAAAGACATTTGTTGAAGGTAGGAAGGGCCATATTTTCAAAAGCTCACTGCTAATTTGAACCCTATCAAAGAGACACACACAAATGTGCACCCATTTTTCAGCACATATCAGGAAACATGAATAATTGAAGTGC-TTTTGTATTCTagattttcattaaatataactCCAGTGTTGGTCCTAGCCTTCAGTTTTGTGCCAGGTTTACTTTAGCAAAGTGAATTAACGAAATAATGGattaaataaaacttcttatTAAGAAATCCATGCACGCTG---------------------AATaaaaat-agtataagaaaaataatgggTTTCTTAGGCTCCTCTAAATatgttctttcattatttttaagggcATATTATTTTGGTGATTCAGGGAACTGATCTTTACTacctaaaagaaatcaaattagtaTTCACTGTAACTAACttccaaatgaaagaaaagacatgttcccagggaaaaattcaagatatACTGTT-TATTAAATTCTATAGCTAAA-TGTGAAAG-------------------AAGTGACAGTAGCTTTTTGTGAAGTAAGCCAAGTCC-ATTTTCGCATACTATTTGATAACTTATAAAGCATATGTAAGTGACA-GTGCTGGTAATGAGTGATATTATATTCACt----------------ctactgtatattttaattgaaaagagAACATATTATCAGTTTGGGATTTATAAAAAAAAGCTGAATACAAACGTGTAGGAAAGTTTGAAGGATTTGTGTGATGAGACAACCTTGGGTTTTGAACTTTCTGTAACCATGTATAATTATCAAACAACTTGAggcatattttattgttttgtccttCACCTACAAAAAAAGGAAGTGATGATGTTTATGAGAAACTCTTGTAGCGGATGGAAGATCAGCAAAGATCAATAGGTTAATATTTATAAACCACAGCTCAGGTAATATAAAGTCtgcaaatgcataaaataaacattatgcTAATGATAGGCTATTGATCATAAAAAAATTACTTTGCTCTAGGGTAACACCTTTCATTTGTTCTGTAGCTTGTATGTATGTTAGTCTAAGATGGATATTAAGTCATAGTCATAATTATCATTTAATAGCCTCAAGACTGATGTAGAGAACAGAGA---------GCTTTCTATGGGgatt---attgttttttattatcaAAGTTTTGCACTTGAGACATGAAAAATAGGAAAACCATCACTGATGCTCTGTCAGATAAAGCTAAGCCTTAATTAA

a score=19033
s chr3           149481921 913 + 160039680 TTTGTTAGATGATGTGGACAGAGAAAGAATAGGAAATTTAGAGTAATGTTTAATGAAGTATGAAGTTATTAATGGGATTCTtagaagtgggagtgaactttggagatcctgacatcatgagttaacgtcctccaatgagcatccaccacgccaaagttgctaaatagc-caagtacgtagcacttgtgcatccggttgacatctgtcaatctttgttaGCGTCCATGCAATTTGTGTACTGCTGAAATGACCTGAGGAGCAGAGTATCCTTGGAAGAAAGGATAGAATGCCAATCTCTGTCTGTACTCAGAAAGAATTGGTCTAGTTAATCCTGATGTTTAAAGTCCAGTGTATCAATAGTAGAAATCAATGTTGTGTCCGTGGCAACTCTCTACCTGTGGAGAAGGCTGCAAGCTCACTTGGTAGCAATTCACTTCCATAATATTCCTTTTATTCTTAGGTAAGTGGTTAGTTTTAGGCATATCTACAAGTACTGGTTTCCTATTTCCCTGTAGCAATTCCCATCTAGACC----CATCACCTGAG--AGTGTTTGGTATACTAGGGTCAAATCCAGCTTAAAGTTGTCTTGCATTACAGAAGCCACTCTGCAACATTTTAAGAATGACAGGGGACA-GCCATCATGAAATGTATTGGTCCTGTTATATACAGAAGCAGCCACTGATTTTTGGCTGAATCAGCTCTTGAAG------------TGCCAATCTGAAGACAATGCCT---GTATATGGTTACTATCCCAGGAAATGCTATATTCTTTAAACACCCAATCATTCTAGAATTCTGTAACCCCAAGATGCAGAACATATAACTCTGGAAATCCAGAGTGGAGAAGCCAGGGCCTCCATTGCCATTACTGAATGCCACTCATTTTGAGTGTTTGTGCTCCTCTAACTTGTAGCTCTAGGGT
s HiC_scaffold_1 136117667 898 + 233722169 TTTGTTAGATTGCTTCAAAGAAGAAAGAGTGGAAAATTCAGAATAATGTCAAATGAAG-AGGTATATATTCAGAGATCTTTTGGAAGTGGGCATGATGTGTGGAGATCCTTGCACTGCATGTTAATTTCTACTATAAAGCAGCCATCTCAA-AAAACTAGTATGTAGTGAAAGTAGACAGCATTAATTAGTCT--TTTACATCAGGCAGCCTTTGTCA-----TGTTGACTCTGAGTGTTGGCAAAATGAACTCATGACCAGTGTAGCCTTTGTGAAAAGGGTGGAGAGCCAATCT--GTAAGTACTTACTAAGGGT-GATCTAGTTAAAGTTGCTGTTCAAAGTTCAACATGTCATcagtagaaatcaatgacaaatcCCTAACATGTCCCTAGGTGTTGAGGAGACAAACCACTAGCTAGGTGGAAAGTTGTTTTCACAGAATATCTTT---------------GGCTGAAATCATA-ATATTCACATGTATGCGTTTC-----TACTTGTAGCTTGGAGAATGTAGGCCGGACCACTACTACAATTAGTGTTTGATGCACcaatttaacattttgtttttaatt-ttttaaattaaagccaTCACTTTGTAACAATGCAAATGTGGCAGTGGGCAAGTGATCATGGA-TGCATGGGTTCCATCACCTACTGCACCACCCAGGGGCTGTTGGTTAAATAGTCTCTTGAAAGTACAATAAAATTGCCAATTTGCAGATGATATCTTGTACATGTGAGTACCATCCTGTGGAATGCAATATCCATTAAATAAGTGATTAGTATAGATTGCAATCTCTCCAAAGATGAGAATATGTGAGTTTGGGAAGCCAGAGTGGAGGCAGAAGTGGTTTC---GCTATCATTTGATGCTATTTATATAAGGAGTTTATGTTTCTCAAACTTGTAACTGTAGAAT

a score=25741
s chr3           149487992 813 + 160039680 GAGCTACTGGTCCACATTGCTAGAAAGCTGTTGTTATATCTTCCTCAGCTGGAGTCTGAGTATTTGACTTCTGTCCTTGTCC-TGGTTATTCTCTAGAAAATTTACACCCAATGCAATCTTCAATTAAATTACCATTCTATATGTAAACTTAGTTTT-GTAGTGTGCTGCTTCAAATCTTTAGACAGCAGCTCACAACTTACATAGAAGGAAAGTAGAGAAGGAATGTGCATGCAATTCTAGCCACAACAGGTTGGATTTGGCCAAACACAAGTACCTATTGGATGGAATCCAGATGGCTATATTAG-ACATGTACCAGAAGGATCCAATTATAACACTT--GCACAGAGCAGGGTCCCCTCGAATACATTCCAAGGACAGAAGAATAAAAATGTACTGTGGGTGAAAGCGC----------------------TGAGGGAGTGCAGGTGGACCCCACCGCGGCAAGCAGGTCTTGAGGAACACAGATGCAAACTGTATAAAGACCCTGAATCTGGAACTATTTTAAACATTGGCCTTGGGGT----------AACCAGAAGAAAAGTCTATTTAGTAAAATTTAGTTGAATGTCAGAGAAGCCCCTAGCTGAAATAATTTGAAACTGTTACATTGAAATCAGTTCAACATGTGTGGTGCTACTCTTAGTTTTATAACTAAGTTATTTATGTAAATGATATTGAGAAGGACAAAAAG--ACATTTTTTAGAGTTTTTCTGGTACGTCTCAAGGATCTCTTCCTGTGTATTTTCTACACCCTGATTATAGGATAATAGAAGATAATCAATATTCTACTAATTTCCTAGGTCATGCATTCTATAAGTACATGAA
s HiC_scaffold_1 136121470 819 + 233722169 GAGTGGCTGATTAAAATCTCTTGGGAGCTACAATTCCA-----ATTAGCAGGACACCCAAAGCTGGTCATTTGCCCTTATCCCTGGCTTTCTGCTAGAAAAGCTCTACCTAAAATGTTCTTTAActaaatt----tgtttcatgtaaacttaattttcataatatGCTGCCGAAAATCCTGGGATGACACTTcacaattta---------aaaggagaaatggaaccATGGTGTAATTCTAGCCATAGTAGGTCAGATTTGGTATCAAACTAGTACATATTGGATCAAATCCAGATGGGTTTGTAACCAAATGTACCAGAAGGATCTAATTACAACACTTTCACACAGAACATGGTCCTGTAGAATGGATTTCAAGGCTAGCATGTTGGAAATACAGCACAAATGAAAATGAGATGGATAACCCTTTTGATAGATGAAGGA-TGTAGGTGGAATGGAAGATAGCAGAAATGTCTTGGGGCACACAGATGAAGATGATATAGGGAACCCGAGTCTGGAATTATTTTAATCATTGGCCTTGGGGTACAGaaggcaaatgaaatgaaaagcaaagttgATCAAATTTAACTGAATGTCAGAAAAGGCTCTggctgaaaatatttgaaactgttACACTAGAATCAGTTCAATATGTtcaatgttattattattttcataactaaattatttatattaatacaaGTGAGCACTCTAATAAGCCACCCTTCTCAGAA-ATTTCTGGTACCTCTCAGGAATATTTTCCCCCACATATTTTCTGCTCTG-----TGGGTTATGTAAGATATTCAATTATTTACTTACTTCCTAGG--------TGTGTAAGtacaaaaa

a score=152037
s chr3           149492358 7113 + 160039680 [encoded data, 7684 characters]
s HiC_scaffold_1 136125799 6687 + 233722169 [encoded data, 7684 characters]

a score=23162
s chr3           149500915 931 + 160039680 tgtaggaagcaaagacagaagcagtcagaccaggta-------agaaaactg-tgcaatcatttaggtgaaatgtaaaactgtgtgggcca-gagtgaaggcactgAGTAGTAGATATGAAACATTTGTAGCATTTCCTGATAAAAAATAT----GCtattatttt------------tatcattaatataaattattCT------------TATTTCCTATTAGCACATAATGATGATGTCATATTTTTGTCTTAACTATTTCAACCATTTTCAGTAA----ATTACGAGGCCTGTAGTTATGGTTCTTGAAAA-TCTAGCCTTTTCTAGTTAGAAAAGTTGGAAAAGTGTTACTGTGA-GTAGATTTATCTATTGCTGGGATATATCTTTTAAATGGTTTCCTCCTATAGAGATATATTTAGCTCACTTAAAATATAATTCAATTCCAATTTGCCATTTTTCTTGCCAGTAAGTCAAAGTGTCATAGGAAATAAAGGCAGAGACTCAATAAAGTCCTAGGCTCTTAAA-ACATTTTCTTTTCTTCCCTCAGAGCAGCAAAATTGAGGGGAGGAGTGTGGCTACAGTGAATGGGTGTCACTGAGAGTCATGAATAGGGAGCACTTTGGTTGGAGATTCAGAGCTCTGGAGTGTGACTGCGGAGGGAAGCATGCATGAAGATCACTTTGGCTTTTG----AAATGTTAAGT----------TCCACCCAGTTGTAAGTAGGAGAGAC-AGTGCTAACCCTGTCACTTTCATGCTTTCTCTCCAAACTGGAATGCTACTGTTGGGTTTCAGGAAAATAAGGAAGGTTTTGGGTG---------TGTGTCTACCCAAGCAAGGAGGATTTCAGAGTTGCAGCCAACCTCACTCTGGAATTAA----TCATCGAAGTTGATCTCAATAACAAGCCATAAGTATGGCTA--CAGTGACTTAAGGACTATTTTATTAGGCATAGTCTATCTTGCAGGGGTCTCTTATGGG
s HiC_scaffold_1 136135081 965 + 233722169 TGTGGAACTTCAGGGCAGAAGTAGCTAAACCAAGTAGACAGAGAGGAATTTACTACATCTATCCTGGTGATATACAATGCTACTTGGACCATGGGTGAGGAAAATGATTGCTAGCTACTAAGTGTTTATGATATTGCCTGTCATATAGTAGTacagttattattttgtttattcttttcataATTAATCTAAAATATTACATAACTGTATAATGTTTCC-----------AGTGACTATGATGTATCCTAATGttaatt--ttcaagtatttgcAGTAACATGATTACAGA---TGTAGGTATGGCTCTTAAAAAATCTAAActcttctattttgaaaaattagaaaaa-atcacTATGGCTTAGATTTGTATATTTCTAGGATatagcttttaattattttccccaTTTGGA-ATA-ATTTAgctcattaaaaatataattcagttCTGATTTGCAATCCTTGTAGCTAACAAGTCAAAGTGTCATATAAAGTAAAGGCAGAGACTTGTTAAATTTC-AGGCACttaaatactttttcttcttt----tgagagcCGCAAAATGAAGGGGAGGAGAATAGTTTC----AACAGTTGTCATGCAGAATTATGAATAGGGGAGCCT----TTGGAGATTCAGATCTCTGATGTGTGACTG-GGTGGGAATC-TGGTgaaaggtaacttttttttttggaaaaaaaattaaatatggaaaAAGTCCAGCCAGTTGTGCATGGGAGAGGCTAAAATTAAtcttgttatctttctgctct-tcccTAGATTGAAATACTGTCCATGGATCTCAGGGAGGCTACCAAGTCATTAGGTGTACTACAAATGAGTGAAACAATTCTAGTAATGCTCTTCAGTAATTGATCATTTGATTGTGGCATTAGACATTCATCTAAATTGGTCCAAACAATGAGATGTAAATAAAGATGTTCACTGacttaaata----tttactgaacatgCTCTGT-TTACTGGGATCCCTTATAGG

a score=31032
s chr3           149507528 885 + 160039680 AGTTTCCTCGTCTGGGCAATTATAGCCATGGTGGGATCAACT----AAGAT--------AATGCATAAGAGCCAATGTATAGAAGGCACCTTGCAAATGAACCTAGTGTCTTGGGATAGTAAATGGCAAGGCTCATCTGTTAGGACTGACTAATTCTTTAAAATTAGACTGAA----------------AGTCTAGAAGACCATGTATTATCACATTTTCTTGCTGCATAAAGCCAACCTCCTTTAAAATACAAAGAGATGCATA--------------------CAAAACCTATGTAATTGTTA--------------AGCATGCAAATC----TCATTTTGGGGGTCTTTTAAACATATACAA-GAGTGACTATTTGAATTCTTCAGTATCATTTAAAGATTTGCACATTTGCTTGCACTGGAAA--CTGCAGTTGTGTTTACTAAAACATATGGATGTTTATTATAAAGTCTTCATTCCTAGTGTATGCTTCCACATGTGCCTATCAAGCTTTACTGGAATATTTTAACCCTCATAAAGTAATGTATGCTATATAAATGTGCATAATTGTGCTTCATAAGATAATGTTCACCTCATCTTAATTATTTGAGTAACATGCAAATATTTAATTGAATGTAAAAATCGACCCTATACATATTTATTTGATCTCTCTCGTCTCAGGGTAAACTTAGTGTGATTAGTATCAGAATAATTGCAAACAGCTTCTGTGCAGAAGACTCTTCCATCACCCAGAGCCCCAGCCTGACCCTCTGTCCTTGAGGAAAGCCTCCTATCGGAGTTTGTGTAATCTTGGAGTGGGCGTTTCTTTAATATTAGTAAGAAAAGGGAAGAAATAAAGTAAAAGAAGATTTATTCTTTAAAAGAATCTGACACCACAAC----------AAGGCTCGCTTTGTCTATCAACTTCTTAAACTCTCCTTGCTCCCATTTCTTT
s HiC_scaffold_1 136140578 942 + 233722169 AGTTTTCTTATCGGTGAAATGAAGACCATGATAGAACCAATCCTAAAAGATGGTTTATAAACTTATAAGAGTTAATATAGGAAAAGTATTTAGGAAATTGCCCT-GTGTCTCAAAAGAGTGTCTTCTAAGTGTTAGCTGTTATTATTGGCTTAGTCTTTAAGACTGTGTTAAGTTTTGTCTGGTCATCTGACCTGAAAAGTGCTAAATTACCTAAT-------CTGTCTAAGGTCA-CTGTATATAAAATATGAGGAAGCATATATGTCCCGAATAGGTGCTTGTcactatttttatcatttttatgttacaATCTCAAAGCATGCTACtcagtattgttttc----cttttcatgcATATACAAAGATTGGCTATTTTAATTCTTCAGTATCATTTAAAGATTTATACATTTGCTTGCTCTGGAAAGCTTGTGATTGTGTTTACTAAAACATATGGATGCTTACTATAAATACTTCATTCCTAG-ATTTGCCTTCACATGTGTCTATCAGGCATATTGGCAATACTTTATTGCTAGTTAAgtaatatctattatataaatgtgtataa-tgTGCTTCACAAGATAATTTCATCCTCATATtaattatttgagaaaaatgcaaatatttaattaaatgtaaaacttgatcctatacatatttatttgctcCTTCTATTCTCAGGGTAAATTCAATACGATTAGTACCAGCATAATTTCGACTGACTTCTATGAAGAAGATTTCACAGTCACCTGAAGCCACAGCCTGGAA--CTGTCATTATGGAAAGCCTCCAAAAGGAGCTTGGAAAATCTTGG---GAGGATTTCTTAAATCtta-tgaaaaaagagaagaagtaaAGTAAAAggagatttctcttcacaaagaACCTGAAAATGTAGCATTGCAAGCGAAGGCATGCTTAATCTATTGACAT-TTAAACTCATAGTACTCAGGTTTCTTT

a score=64838
s chr3           149512424 2434 + 160039680 ATCTTTTTA---TTTTCTTTCTCC------CATGAATCCGACTTCCTTAGAATTATACCAGGTATTAAAGTAGATCCAGCAGATAGAGTCCACCACAC-CAGGGGACACTAAGCTATGCCTTTCCCTCAT-----ATCACCGTCCTTCTCCTTTCCGGGGCAAA-TATCATCCTTCTTAAACTCTCCTATCTTTATTTTGATGGTGACAA-GTATAATATCCTGGTCGAAACTCTCTGCTATTTCTCTGTGCGTGAGTGAAGCTCCTTAGTGCTCTGAAACTGTGCCATTGGTATCATTTGGAAAGATTTAAGTCTTGGAGCATTCACAGAGAACAGCTAATTTTTTTTTTCAAATATGAATGCACAGTTAATTTGCAGAGTGAGCTTTAAATATTCCCATATATTGTGTGTCATTCAGAAGTCTTTATTTTCCACTCATTGGACATCAGGGCACCGTCCAAGAATCTAGAATTATTAAGGCATATAAAATACATGAATCCCAAATCTCACGGCTTGTCCCTGGACATAATTACACAGACAACGTCACTGCACTCTTGAAGCGGA------ATGCCATTGCAAGCTG----CTTGTAGGCTTCATATGTTCAAATGGAGTGATTGAAGAACAAGAAA------GGTCTGTTTACTACCGGGTCATGGATGTCTAGCCCGGTGAGAGATCCGAAAGATTCAT-------GTAATTGGTCATCTTGAATTCAGTGCCTAGAAAATTATAAATCTGTCCCTCTCATGAAGCCGCCTCTG--AAATACGGAGGCTTTGAAGGGACAAAATGGGA-GTTTACCAGGAA------AGACCAGAAGCTTTGAACATGGCTGTTCAGAAG-CAGCAGGTGTT-GCCGCCCCTGTCATAG-CTACACAGACACTGCCCCACCTAGCATTTCCCTTTTCTG-TACATCCATGTATCCTCTCACCATGACCTTCCCTAACTTTGACAATGGTTAAAAGAAACCATTGTA-CACTAAATCTGTCCACCGCCATTAAGTACTTCAGCTGCATGGCAAAGCATT-----CCGGTACCTGCTCTCCACGGGTTTTAAGGATACAGTTTTATATTCATTTGCATGGTGGTTGGTGTACGTCTT-AAGCCATAAAGACCGTGTCAAGTGCTCTGAGCAATAATAAAATATTAATTTACAGACAAAAAAATTAAGTGGATTAAAGAAAGAGCTGTTGTCTATCCCTCGAGTGGCTTTTAAGATACTGATGTCTATCTACACTTTGAACGTATCTATTCTTAGCTGTTCAAACCACGGGTGATGAGGCTCGAGTAACGGTCTGCTGGTAG-AGAGAAG-GCACTGGATTGAAACAACCAA--CCATATCCTGTCCAATGCTGACTATGGACAAAGGCACCCCTT--CTTGTCTGCTGTCTTTCATTTTTCTTTTTGGAAATCATTATGCCAAGATAAAAGACCTGTTACTTTCCAGTAGAAACTGGGGA-------------------------GGAAAacacacacacacactcacatggacacacacac------TGATGACATCC---------------------------------------ATCATAGATGCC----------------CTTATTTATCAAAAA---------------------TTACATGGACGGATTAATGT-----------------------------------AAAAAGTGTATAAAATAACTG--ATAAGCAGTAACTGACCACTGGCTATCA-------CTGAGCAATGGT---AAAGCTTCAGGAAGTAGAGAAACAATGGCTTATGTTTGATTA-TACACTCTTGTCTCCAAAGCAGAAAATTCCATTCAGAAATAATGTAATTTGATGATGAGGCCC-TTTTAATTTTTCAATTCTCTGCCAGTTTTCCCATATAGTGGGAGCCTTAAAAATAACTAATTGGCTTTCAAATAGCAAGCATTTGCCAGTGGCTTTTCATATTGCAGTAGACAGAGGTTGAGGGTAGTGGGAGCTTGGGGGCAGCGG----------ATCTTTAGGACAACATGTGAGGCAAAGGAGAAGGTGTCTAAGTGCTGATGTGAT-CACAAA---GCAACCACTTAGGAAAGCTACAAAGGAAC----TGATAGGATGACAGA-ATGCATTGTCTAGAGA-CCAAGGTTTAGAGGGGCTCCTTTCTCATCAATAATTTTATAAAATATACACGACTCTCATGGCTTATATGTATACATTATGTTGAAGGGCAGGATGCCATGAGAGACTCCTCTTTGTTTGTGTTCCCAGAACTCTTTGATAGAATCAATACTCATAGTCAAGAGCCATTAAAAATGACAACTGTCTCTGATATAATGAAAGCTTATGGAACCTATGTTTTAAAGGCCTTTCCATTTTATTCTCAAGAGCCAGGAGGAAAATCAGGTTGGATATCTTACTATTCATGTGGTAAGCGGGCATGTATAGAGTCCAGTAT---TTGGTGCTCATAATCCACATTTATGCTGGAATTAATATTGGCAAAAGCTATCATTTGATTTTATACAATGAACATGTATACTATTTCGTGATAGCCT-CCAAAGCCCAAGTTATCCACATACATACTATTTTTTATCAA--TAGTTGTATTTCCTATTTATAATTTTCA
s HiC_scaffold_1 136144746 2602 + 233722169 atctttctggCCTTTTCTTATTCCGCAAGACCTAAAT--GACCTAAATGAAACTATATCAAGTG--AAACTATATCAAG---ACAGAGTATAGAACCCGAAGAAGTTAGTGTGACATGTTATTCTTCCATTCATAGCCATTGCTCTTGGTCCCTTGGGGTCAAAATATTATGCCTCACAGactttcctgccttcattttgaCTGTTTCACTGTATAGTATTTAGGTTGAAATT---TGCTGTTTCTGTAGACTTTAACATAGCATTATGAAAGCATGAAAGTACATTATTGGTATGGtttagaaagttttaaattttggattgTACACAGAGAAAGGATAAAATTAT-----ACATACGAGTGCAAAATTAATCTGCAAAGCAATCTTTAAATATCCCTATACATTTTGT---actcaaaaatcattattttCCATTCATTGAAAATCATTCAACTATCCAAGAATGTAGAATTATTATAGCATATAAA---------TTCTAGAACTTGTGTCTTGTTCCTGGAAATAATTACACTGACTGAGTCACTG-GTGTTTGAAGTAGATTTTTTGTGGTTGTGCAGGAGGACACTCTGAGAGCTTCAGAAATTTAAGCTAAAtgactgagggaaaaaaaaagaaaaggtctaTAAA-------GCTGTGAATACCTATTTTAGTAAAGGATGCAAAaatttcaataaagaaataattggTAATCTTGAATTCAGtgac-agaaaataataaatctaTCTCTTTTATGAAGTCTTTTGTGTGAAATATGGATGAGGCGAGGTTATAAAAAAGCATGTTTACCAGCAGGAGCCTAAATCAACAGCTTTGAACATGGTAGTTCAGAAGGTAGCAGGGCTCCACTGTTCCTGACATAGGCAACATcggcattcatttatttaatattttactttcccACTGAATCCAATCTTCCTCCTGCCCTACTCCTCCTTACCTCTGTCCTTAGTTAAGATAAATCATGATGGCATTAAATCTGTCCACCACAGTTAATTACTTTAGTTATGTGCTAAAGCATTTTGTTCCAGCACCTTCTCTCTATGGGTTTTGAAGATACAGCTTAATATTCATTTGCATGCTGGTTACTGTACATCTTCAAACCTTGAAGACTATGTCAAGTGCTCTAAggaataatgaaatattaatttcaagacaaaaaa-ttAAGTGGCTTAAAGAA---GCTGTTGTCTATCCCAGGAGTGGCTTTCAAGACATTGATATCTATT----CTTCGAACCTATCTATACTTAGCCATGCAAACCACACATGACGAGCCCTAAGTAACTGTCTGCCTTCAGTGGAGAAGTGCAC-GGATTGAAACTACTGATTCCTTCTTCTGTCAGATCATCGCT-CAGAAAATGGATCCCCTTTTCTTATctgcagtcttttattttttt-----gacagcATTATACCAAGATAAAAGATCCATTACTGTCATGTAAACACTAGGAAAATAAATCTAATGCGTAAAGGAATAGTAACATCTAAATATGTAGTGGCATGTCTGCATACAGATTTGGTAATGTAATTCCATacttacttcattaaatactttatttGTGGAAACAAAATGACAAATGCCAAGCAAAGCCTCTTTTTTTGCTTATTGGAAAAACTTACATTATTATGCCTTTTTATATGTCAGAATTGGTCTTGCCTATACAAAGTTTTACAAAAATGATTCAGACAAAAAAGGATGGGAATGAGTTATTATAAGTAATGGCTTACCACTAGTGTTCAGTAAATGTTGAGCAATGGTGGAATAGTTTTGGGAAGTAAA-ATATAATAACTTACTTTGGGCTAATCTATAGTTGCCTTTAAA-TGGGAAACTGTATTCAG---TAATATAATTTGAAGATGGTATCAGCTTTTGTGTTTCAAT-----GCCAATTGCTCTGC-TAGCAGGAGTGGTGTGAATGCTTAATTGATTCTTAAATAACACTTATTTGTAACTGGTTTTCAGGACAGGAAGGGACGTAGCT--------GTAAGAACATGGGAATAACAACAGTACGGATGTCTGCAGGG------GTGAAGCAGAGGTGCTTGTGA--AAATGCTGAGTGGATACACAGACTAGCAGCCACTTAGGAGAGCCTCAGAGCAACAAGATAAGAGAATGGTAGAGAAATATCATTTAATGAGCAAAGGCTTAAAGGGATCCCTTTCTCATCaatgattatataaaatatacatgagCCACATGGATTTTACCTACTCATTATGTTGAGGGACATGATGTCATGAGAATATCTGTTCTGTTAATGTTCCCAGAACTCTTTGATAGAATCAATAATTACAGTCCAGATTCATTAAACATTATATCTGTCTCCGATAAAGTGAAAGTTTATGGAACCCAGGTTTTTAAAGCTTTGCTACTTACTATTCAGAGCCTGAGAGGCCAAACAGTATGGATATTTAACTGGCTCAGAGCTTAGCAAGTGCCTGAAGCATGccatatataataataatcagAATCAGTATTCATCCTAGAATTGCTACTGGAAAGACCCTTCAATTGTCTTTATATATCAGGCACGtttgttatttcaaaataatgtgtAAAAGCCCAAGCTCTCCAAGTGCATGTTACTCataattaacttatttttattttc--tttgtaattgcCA

a score=72951
s chr3           149517454 2580 + 160039680 TTAATAACATGCAAACCAAGCAATGCACACGCTCAAGAAGGAGAGTGAACGTGGGCCTGGTTTAGTGCAGCCTTCTTAAAAAAAAAAAAAAAAAGGCAAGCGAAGGCTTTAGGAAGAG-ATGAATTTATCCAGACAGACCTTTTCTAATCTCTACCTCTCATGTATATTGCATGCGACCGCTCAGGATTTAGACACCAGGAAAACAGAATTCTCAATGTGAGACCCGGCATTCAGAATGTTGAACAAAGAATTGGACACACTGCTCATTGCTTCACAAACAGAATTTTCAGCATCCCAGGCAGCCAGAGCTTCGTTGTCCTCTCTGCAAGAGGAAACACTTAGATCTGGGAGAAGAGACTCCGTCGCACTGACACAG-CTACCGTGATGTGCGTGCGCTGCAGGCCTGGACGGCAAATGGATTTTATTTTTAAACTCCCAAAAGTTTAATTTGTTTTCCCAAACTCTAGGTCTCTTTTACTCCACTTAAAATACATAGTTGTCTTCTCTAGAGtctctctctctctctctctctctctctctctctctct-------------------ctctgtctTGTCAGGTTTGTTT-------TGTGGAGC------AAATGATATAGTCACTCAGA--GACTGTCAGCAACATCATCCTGA---------------------------------------------------GATGTGCCAAAGTATTACATTCCTTCACCTGCATGTACAGTAGAA-TGTAGTTTCCACACGATGACAGCACAAGGCA-----TCCTTTTCTCCTTCCTCTGGTTTCTAAATAGTTTAATAATAAAATTTGTAAACCA-TAAAGAACGAACTATGTGACAGCTAATGA---CTGCACGGGAACACTGCTGAGGTTG---CCGGTGTGGT-----TTGATGTCTGCTTACCGACAAGAAAAAAGAGAAAT-TAAGGATGGAATGTGATATTTTAAAGTAA---------------AGTTTTCTGTGGATCTGAGAGCAGCTGCCCATCACCAACAAGAGCAAAGCCTGTAGCTGTTTAAATGGATGCAAACTGAACGAGTTGACCCTAGTTGGAGAGGGCAAAGTAAATCACAAGGAAAAAGGAAG-------CGGGGCTGGGGTGGGGTGTGGTGGGGGATGGGGGAGCAGGAGGTAACCGTGTGGCAGAAGAAG--------------------TGGTAAGCAGCAGATGA---------TCCTTCTCTTGAAAGTGCAATTGCTACTTCAGCATTTCAAGGGAAAACACACTTAAGAAATGCACTGCCGCCCCTGCCTGTTTTCACACTATCCTATTAAAAAAAACCAATATATCCT---ATAGTTATGAAAATCAGCTTGAAGATGAGAACAGGGGAGCCCAAGAAAG----------------GAATGGGAAGGACGGAGAGGGAGGGGG----------------GATTTTCT-----TTCTAACCACCGTTTCAAAGAGAGTTTAAG----AGTCTCATCAAA-GCACAGGCTTCAGACTACTAAAAG--------CTTGTTTGATTGTTTCTTAAGTGTGATGCCACCGACTGCACCGATTCCCAGAAGAAACCTGCTAGTGCCATGAACAGGAACGGAGGGGTAGATGTTTGTGTGGAGGCCTGCGTAGGGAATAAGACA---------CCACCAATATAACTC-AAGTCAAAGGAACTAGG---AGTGGAACAAGCAGCAAGtggagcggatgctggtgctggtgctggtgctgg-----tgctgatgctggcgctggctggagctgCTCATCTGTCGCAGGGCTGGAGGCTCGAAGTTTGGAAACTCCAGTGTTAGAGGCAGATACCAAGCATCCCTGAGACGGCGGAGGATCAGCCTGATTGCTCATGCTTGTTAGGCACGGTCACCATGCCGTCTTCACTGGG-CAAGGAG--AAACTTTGAAAAGTCAGTGTGATTTGTAACGATACAAATTCTCAGAACCCGGTAATAAAGAGGATGCGCGATGAAACCTGACTGAACGTTCAGCTTTTTTTTACCCCCCACAAGTGTGGACAGCTGAAGAGGCACGGAATAATACAGTTGTCAGTGCGCGGCTTCACCTTCGCGCACCGAGCAAACAAAGAGAGCGATGTTAATCAGCTCAGCTCTGTGGCTGGCTAATCCTCAGCCAGTAATTGATAAATGGGGAAACCATACGGCTTCGACTTCGTGACTCAGAAAAGCCGTGAATATTCATGTCA---TCTTTGGTCAGGAAGCGTTCTGCACGTTCCTGGGGCAGGTATTGGAAAGAGGAATACAG---TTTCTCGCTCAGCAGT-AAATACCGCTTCTCTTTTAAGACCCTTTTTTTTCTCCTATTAAAAGTGACGTTTAGCGATACACAGAGGACCGCCACCACCATAACTGCAGGCGAATGACAAATGGCTCCGCA-GAAGCCCCGTACTTCAGCTCTTTTCATAAGCTACATTTGGAAAACTAGTAAGTCTTT-CAGGAAACCGAGTACACGCACGACTAGAGAAAATGAAGCCAGAATGCAGTAT--------CGGAAACACTGACTCCAACTTCGCGTTCATAAGGATAATTTATTTTCCAAGTAAACCTGAGCAGT-GTGCTGCTGTTCCGCAGCGTGCAAGGAGTCAGGCCTGAGGACCC-----------TTCTCAGCATCAAGTTGGCCCGCAGGAAGCTGAGGCGTAGTCATGAAATCAGTTTCAAATAGTGAAAAGGTCAAGTTTATGCTACTGGTGTAAAGGTGTAAATTTTTAACTTGCAGAAAATATAT
s HiC_scaffold_1 136148704 2683 + 233722169 ttaataaaat-taaatcacacaATGTAATTCATCAGAAAAAAGAG----CATTGATACACTTGAGTTATGCCCACTGAGAAAAA---------------GCACAAGCTTTAAGAAGAGTAAGAATTTAAACAGAAAGAATCTTTCTAATCTCCCTCCCACATGTATATTGCATACAACTACTCAGGAtttagaaaccagaaaaacagaatTCACAATGTGGGACTTGGTGTTTGGAATGTTGAACAAAGAACTG---ACACTGTTCATTGCTTCACAAACAGAATTTTCAGACTCTGAGGCAGCCAGAGCTTCGT---ACTCTACAGAGAATGATCTGCTCAGATCTGAGCGAAGAATTTCAACAGCAGTGACACAGTCTGCCTTGATGTGC------TACGGTCCTATGCGGCAAATGgatttttctcctaaa-----aaaagtttaatttgttTCCCCAAACTATAGACTTCTTTTACACCACTTAAAATATGtagtttccttctct-----ctctctctctctctttctctctctctctgtcccttttatttgatatatatatattctttttggtatcaggtttttgtgtgtgtatgtaggaCTATGGGAAATGATTCAATCACTCAGACTATTTGTGATAAAAAGCATTGTGAAAGAGATTCCTATTTGTTAGAAGGTGCTAACTTGCCTCTTATGTAGTCCTAGATTCACCAGAAAATTAGATTCTCCCACAC-----TAGAGCAGAGGTGTAAGTTCTGTGCAAATAAAGTGCAAAtcagtctctctttttcttctctggctCCTTTCCAAATAGGTTAGTAGTAAAAGCTGGAtactaagaaagaaagaactcagaGACAACTAATTCACCCTGCACTGGGATATTCAGTAAACTGTATCCTGTCTTGCGATCCTTCATGTTCAC-------------AAAGGAGGAATCTAAGAATAACTCAAAGTATATAGGAATAAGAAAAGAACTCACATAATGTTCTTTGGATTTGAAACTGGCTGCTGATCACCAAAGAGAACAAAACATGTGAATGTTTatatactcacaaactgaaagagaTGACCCCAGTAAAAGACAGCAAGCTAAAccacaaagagacagaaaaacaaaaacaaaaaacggaTAAAG------AGGAAATCAGTAAGTAAGAGGCAA---------AGAGAAAAGTTTGGATCTAAATCTAAGCTGCTAAATAGCAGATGAGCAGGTTCATTGTtctattgaaaaagaaattgctaCTTCAGcatttaaagtgaaaataaactgaagaaaGCCCCTTCAGGCTTTGCCTGTTTTCACACTATCCT--TAAAA--------TGTCCCCTGGCATACTAATGAAAGT------GAACACGGAGGAAGGGGAGGGCGAGAGGGTGGGGCAGGGAGGTGTGGGGGAGAAAAATGGAGACAGGGTGAGAAAGAACAAGCCATCAGGTTTTGTCAGGATTCTTTGCTTC-TTTCAAAGAGAGTTTGGGCATCAGTTTCAGCAACTGCAGAGGTCTTGAACCACAAACAGATTCCccatttgttggtttgttttt--attttaataacagcGGTAGCCCCGA----AAGAAATGGCCCTGTGATGCTTTAAATAGGAGTGAAG----------CTGGGTGG-----ttagaagggaagaagaaagggaaacaacaacaaatgtgAAACGAAACCAACAGAGCTGTGCTAACTGAATCCACCA--AGGTACCGCCG----TGGGCTTGGTTC--GTTCCAACATCTTTCTAACAGTTGAGTTCTCACGGCCCCTGCTTTTTTCCACCGGCTCATggcattaacttttaaaactttaattttccaGGCAGATACCAGGCATACCTGGGAACACTCATGATGGACATGATTAGCCATGCTTGTTAGGCACGGTAACCACCGGGTCTTCCCTGAGACaagaaattaaactttaaaaagtcatcCTGATTTACAACTAGACAAATTCTTGCAACGTGGTAATAAAGAGGATACAGGATGAAACTTGACAGGATGCTAAGCGTATTG--------CACAAGTGTGGACAGCTGAAGAGGCAAGAAATAATACAGTTGTCACTGGGCTGCTTCACCTCAAC--ACCGAGCAAACAAAAAGAGCATTGTTAATCAGTTCAACTCTTCGGCTGGATAATCCTAAACCAGTAATTGATAAATGGGAAAACCATACGGCCTCGACTCTGTGATTCATAAAACACATGAATATTCATACCAGCTCCTTTGGTCAAGAGGCATTCTACATGCTGCCGAGGCAGGC-TTTGAAAGAGGAATACAAATCGTTCTTGCTCAGCAGTAAAATACTGCTTTCCTTTTAAGGCC---TATTTTCCCCTATTAAAAGTGAAGTTTAGCAATACACAGAGGACAGTACACACAGTAAATGTAGGTAAGTGACAAATGGTTCCGCAGGAAGTGCTGTAGTTCAGCTTTTTCCTCCAGCCACATTTGGAAAAATACTAAATCTTTAAAGGAAACTGAACTTGAATCCTACCATAGAGAACACAGCAGCATCACTGCATTTCCACCATGGAAATACTTACTCGATCTTTGCATTTATAAAGATAATTTATCTTTCAGTGAAATCTTAACACCAGAATTTCTGATTGGCTGGATACAATGAATTTGGTTTGAAAATCctattaaaatagttttcaatATAATATTGAT-------GAACTGCAGTTTATTTATGAAATTAGGTTTAGACTGTTC-----TCAAATTTACAATATTTGTGTTAA----------TTTTACCTTTAGAAAATGTGT

a score=83988
s chr3           149522386 3196 + 160039680 GACAAGGGCTGGCATATGTGAGAAACACTCAGTATT-CAACTTCCATGCTTTGATTACAAGAATTATAACAGACACCATTAACTGACATTTACTACAAATAATTCCAGTTGAGTCTAAACTCAACCTATTACTGCCTGCCACCGCTTTGCTGA----CAGGTCGAATGAGCACCCTTGTAAATGATTTTGATTAGAACATGGATTCTCAAGCCCACCAGACCTGC--------TTCAGCAGGTTTATTTTCTTATGGATTAACTGAACTCAGAAGCCCGGAGCTGTGACACCTTTGGACTTCCCTTACTTTCCAGGTTTGGCTTAAGGCTAAATTGAAAGCATGTAATCTAAAACTAAATCCA--GTCTCAGAAAAAAAAATATTTACTGTTTTGGGGCCAATAACTCTGTATCAAGACATGATACAGGTTATTTTGGGTAATGATGAGAGGCCACTATAAAGTTGCTGGATAATGTATGTCAGAGATGCTAGCAGGATCCCAGCACCACAG---TTGCCCATCCATGATTAAAAACATCTGACTCATGTGTGCAGCATGTAGAGAGGCTTTCCCCCTT---GTTAGTGTTCTCAGCATTGGGAGCAGTTACAGCTACAGCATTTTAAGAGGGTGAGGTTTTTTTacacatacacacacacacacacacacacacacacacacacacaGGACAGAAAGGAAGAAAGGGAGCAAAAACAAAacaacacacacatacaaacatgcacacacacacacacacacacacacacacacacacacacacTAAAAGAGGCCTTCAGAGGAAGCAG----TATTCCTAAATGACATAACATTAAGA-TGTGTTCTTTTTGAAATCTGACAGAACCAGA-GCCA-------------CAGAAAAAGTGGCCAAGCAGGCTATGTGTGACGTTAAGGGACA--AAGGCCACTCTTGGCCAAGGATCTGAGTTGCCTTCAGACCTAGAAAATGAAGAGG---AGGAATTTTATGTAGGCTTTGATTT--TCCAAACAGAAATTTCTGTGAAATTCCATTGTCAAAGAAAGAAACAAACAGGAGAGGCAGAGAGTTGTAAAAGTTCAGGTTAGTACAAAATTTCTAGGGA-GCTGTGGGCTGCCTTTCTG--------TTCTAAAAACAAAGACATTCTGTCCAAAGAAGAAAA--GTAACATGGACATATACTTAACGGGACCTCTGATAGATCAATATTACCccagcctgtttataaacacctctctctctctctctctctctctctctctctctctctctctctctcatcc----tctgtccctctctttctT------------ATCTTCTTTAATTGTCTTAATAGAGTTTGCTAAAATAATTTTTAAAAAGTATTTTCAACATAGAAGACACACTGACCAAGGTAATACT---------------CTTAAGACATCCCC---TTTTA--TATTCTTACCCCAAGAAAAA---------------TGTTTCCT---CTCCTAGATGGAAATG---------CGTCCTTCTTCTC----CCCATCTAAGTTCTAAGGAA-GGAGATTAAAATTGCCCTTGAACA-------TTCTGTGACTAG--TGAGCTTGTCGTGGCTGGAAGAATTCGCTGAGCTCGCTGAGCTACGGCTCTTCTGGAAAGGGTGCTGCCA--TTGTTTTCCAAGGTTCCCTTCAGTTCGTTA-AAAACTTTATAACATAACGTCGAAGACCAAACGGCTTCCCATTAG-GCAATGGAGAGCACACTGGTCATGTTTCCGCCTCCCCCAGCCTGGCTTTCTCTGGGTTCAGGGGCAGTACCTGCTCAGATTCTATAAGAATCCTAAGCCTCACAGTCACTGTGAGCAGAAAA---GGGCAATAATTATGCCGCATTTGATCCATATCAAAGCA----------GTATCGATTTACATAAGGTAAAGCATACAAGGCGGCGTTGCCTT--CGCCCTACCGCTCTACTTTCGGCAAGAAGTTCTCTCC-GCACACTGTGCTGGAATACCAAACCTTCACGTTGAAATTTGTGATGTTAAACAAACCATGCCAGTCATTCAACTTTTTAATTAAGGATGCAGTGTTCCATTCCTTTTCAGACATTAAAATTCAGGTGCAGTCATTAATCTTTCTAAACGAATTCACCTGTGGCTAATACTGATGTATTTTCTATGAGGCTTGTCATGGGT----TGCCGCTCGCATAACCACTCCACAGTTAATTACACAGGGGATTATCGTTAGTGTCATGAAGATAAAACCCC-CTAGCAGCCTTGGAGAGAAGCTTCGCGTTCTTTCTCTTCCCCTCCCCTCTTTTTTTTTGGAGCAATGCCCTACTTCATTTTT----------------GTAGTGAAGAATAACACCATCGAGAGTTTGTTTCAGTGGCAAGATGAAGATATAGCATGGGGAATTAGGTAAAAGGTGAGTATGCA----------CTGGAAAATTGTGCTTTGACAAACATGCCTTTGCAGTCCGGGGCCCAAAGTCAGGGTGAACTTCGAGGGATCCCGGTGTCACGCACCACTTTAGGTGTAGGTCCTTTGATCTcacacacacacacacacacacacacacacacacacacacacacacacacacaTTTCCTGAATCTGTGAAGGAAGTGTTGTTGTTATACATGCCAGAATCCAGGAGATTAAAGAGAGACCTTTGCCATCTTTAGGAA--ACTTTTTGAGATAGACAGACAGCACCTAAAATGTGCAGGAAAAGA---CAAAGATGAAGGCATGTCATAGTCCAAGACTCCTAACAATTGTGATCCAAACCAACCCCCCAAGCAGGACGGGAAATTCCATGAATGTG-CTTATGCTAGCAATTTAGATTAACCATAGGTAGCAATTCTACATTATGAGAGAAG-GGAAATAGAAATGATTCTC----TTTTCATGATTATCAGTTACAACGCATACACTTCACGCATATACTAATTGGACTTAGTTTAGCTGATATTTTTCTCTGGGGATTGTTATTTACAGCAGAGTTGGATAGTCTCAGAAAACAATTTGAAAGGTTTA----AAGATGTAGGTGATGTTGAAGGAAAGTATAGAAAACATACAAGCTTCAATTCAAGACAGTTTAAAATAACCTTAATAAATGAAAAGTTTTAATTA---------------------------AGGAGACTG--AAAAGCCATATA--------AAACTATAAAATAAGAGAAACAATGAAAAAAAA---TTCTGAAA---TAGTTGTTACTGAAAGAATAGAAGT------ATTTTTTTCAC-CAAATCATCTAGCCTAGTTTAAATAGATTTCAAACCTGTTAATGGAACATGGAAAAATATAATTCCTAATGTATTTTTTGTAAAAATGGTAAGTTTACATATAAAA
s HiC_scaffold_1 136154793 3208 + 233722169 GGCGGAGGTTCATAACTGGAAGAAATCTTCAATACTATAACTTGAGATATTTATTCACTAAAATGCTAACAGACATTATTAATTGACATTTAATGTGAACAGCTCTAGGCAGAACCGGACTCAGCCTAGTTTTTTCCATCAACACTTCGCTGAAAGACAGGTCTAATGGGTgactttgtaaattattttaaatgatattcaCACTAGCAAACCTTCCACCCCTGCAAATTGTATCCTGCAGATTTACTT-CTAATGGATTAACTGAATTCAGCAGACAAGAGCTGCCGAAGCAttaatatttctttacattttggttttggtttaatCAGAAGAtgctaatgtttattttaaaactaaatccaATGCCTCA------AAAATATTGACAGTATGTGTGCCAGTAACTTTGTCTTACGCTGTGGCACAGGTAATTATAACCAATGGAAATAGGCAGTGATAACTCGCTTTAATAATATGTCTCAGAGATGCTAACAGGA--CAGGGAGCACGTGCTTTCTCAATTCATGACTGAAAACATCTGATACATCTGTGAGAACTGGAG---GACTTTCCCCCCCTGGGCTAGTGTTCTCAGTACTGGGAACAGTTACAACTACAACATTTTAagaggctgattttttttttttttttttttttttc-------------------------------------------------------------------------------ttcacacacacacaaaacca-----------------------tgAAAGAAGCTTTTACAGGAAGTAACAAATACTCCTAAATgacatttcattaaaaatgtgttCCCTTGGAAAGCAGACAGAACTAAAAGCCATGCTTTTACTTGGCAGAGAAAGTGGTCCAGCAGGCTATGTGTGAAGCGGAGGAACATCAAAATCTC-CTTTGCCATGGATGTGAGCAGCATTCTGAcctagaaaataaaacagcaaaggcATTGCACATGTGCTCTGACTTCTTCTAAACTAACATTTCAGCGGAATCCCCACTTCTAAGCAAAGAACAAACCGAAGATGCAGATACTTGTATAAATTT-GCCTAGAACAAAACTACCACAtatacttttggtttcatttttaaaaacacattgtgACAATAAAGATGgattatttaaagaggaaaaaagtgatcTGAATATGTATT------AACATCAAATCCATCAGTAGTCTC---------TggtaaatctttctttttttctttgtttctttcttccttctttttcttctctcttttttccaaaTTAAGATTTGCTAAATCTTTAGAACAGATAAGCTTTCTGTGATT-TTtcagtaaaa----caacaacaaaaccaatgtAATGTTTGCAA----------ACAGTG-CCGAagtattattttagattttttttttcttaagagatCTGCCAGTTTCAGCTATTCTTACCCCAAGGACAAATGATTAATCAGAGTTATTTCCTACTCACCTAAATAGAAGCATGTCTAAGTCGTCCTTCCCCTCGCCCCccatttaaattctaaaaaaaggagattaaaattgTCATTGAAAAATCTTCTGTCTGTGACAAGCTTTAACATGCTCTG--TAAAAGAATTTGCAAAGCA----GAGTTAAAACTCTTCTGGGAATGGTATTGCCAAGTTGTTTTTCAAGGTTACTTTCTGTTCATTAGAAAACtttgtaaaataataatgaagaCGAAACTGCTTcccaataaagaaaaaggaagctcACTCATCAGCTTTCCTGCTCCTGTACTTTAACTTTCTCTTAGTTAGAGGGTAGTGCTGGCTCACACTCT-TAAGAATTCTTTGCTTCAGGGTCActgtaaacagaaaaaaagaggcatAATTACACCACATTTGATCCATATCAAAGCAACTGATCCATGTATCGATTTACATAAAGTAAagcacataaaacattttttacttttcaccCCACTTCACCACTTTCTAAGGAAAGTTTCCTTTTGCATACTGTATTTGAATACAAAACCCTCCCGCTGAAATTTGTGATGTTAAACAAACCATGCCAGTCATTCAACTTTTTAATTAAGGATTCAGTGTTCCATCCCTTCCCAGACATTAAAATTCAGGTGCAGTCATTAATCTTTCTAAACGAATTCACCTGTGGCTAATACTGATGTATTTTCTATGAGGCTTGTCAGGGGCTGCGTGCGGCATGCATAACCACTCCACAGTTAATTACACAGGGGATTATCGCTAGTGTCATAAAGATAAAGCCTTGctagcagcagtatagagaaggttctttttctttctc-tcccctcccctc----tttttGGAGCGATGCcctatttcatttttgttaacaTCCACATAAGTATTTAAGCATAATA-CAT--GGCGTTTATTTCTACGG-AGGGTGAAGATATAAGCCAGCGAATTAGTTAGCAGATAAGCATGAAGGGTTACCTGTTTTAGAGTTTTGCTCTG-CAAAAGTA-CTTTGCAATCTTTGGCCCAAACTCCAG--AGAGCTGAAGATCTATCAATGCAATATACTATTTCGATTTTAGGCACCTGAGTTAAACATTGAAATG-ACAT-----------------------------------TTTTCTGAATTTGTGATTTGAA---TGGTAGCATATATATCTgtattcaaaaaaacaaaaacaaacttttgCCAATTTTAGTAGCTACTCCCTGTGAT----GAGTAATGCATAAAATGTATAGAAAGAAACTTCAGATGCtaagtggttttaaaaacactaaaccacaacaat-------aaaaacaaaggcaaaaataggACAGCAAATTAGATGAATGTGTTTTACTTTAGTAATTTAGAATAATTATATACAACAACTTTACACACTGGtagaaatagaaatcaaaatgaTTCTCCCTTTTTTCATAGTT--------CCACATGGA-ACTTTAAATAGATAC-ACTGTAACTGCAATTAACTGTCATTTTTC-CTTGAACCTGTTATCCACAGTATATTTGTATATtcctagaaaacaaacaaaaatgtgtgATACAAAATACGgccaaaattaaatgaaaatatgggaAGCACATAAGCTTCAGTTCAAGACAGTTTAAAATTCCCTTAGTCAACAAGAAACTTTAAGCAGCTCCAAATCCCATCCACTAGGTTGATAGGAggatgttaaaaacaaaaaacaaaaaacaaaaaacaaaaccaaaaaaaaaaaaaaaaaaaaaccttttaaaaagcaaattgccattg-aagaataaaaattgtacaaTTTTTATCTCTCAACTTAATTAATGTAGTTT-AAcagatttt-aatttcttaacaaaacatggaaaaatac--tCCTTAGTATATTTTT----agaataata--tttagaaataaga

a score=141774
s chr3           149528028 9516 + 160039680 [encoded data, 10574 characters]
s HiC_scaffold_1 136159535 9747 + 233722169 [encoded data, 10574 characters]

a score=16246
s chr3           149537676 861 + 160039680 TATAAGCTTACAGATTATAAATGAAGTTATTCAGAAAGTCTATATTTC-------AACTATTCACTTCTTTGTCCAGATCAGACAAAAGTATTC-TGCCAAC--TTTCTGATCTGATTTTCTCTTTCATTGTCAAAAAGAATGTGATTCTTCTCGAGTCTCCAATGCAGCTGTAAGAACAAAATTACAGCCA---GGGCTTAAAATTCAGTCATAGACCACtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtTTTATGT--GGATACAACAGTATCAAAATTAAACAGTGCCATCACGGTGTGGCTTCTTGCCTATTTTATCCCT-------TTCTCTTCTTGGCGTTGTTAGTGTTAACAAGCCATCTACGGGCTTGGGACATTCTCAGCAATAGACCTTAGAGCCTCAGTAGGTCAGCAGGGTCTCTAAGGTTGTATCATGTAAAAGTCAAGTAATTAAATACTGATTACTTACTGTTTAAGAAAAAAAAAATAGATGGCTGGGAAAAGTTGGACTCCAAAGGTCTAATTTCACAGAGAAGGTTTCAGTGAAGATTA-------AGCTGTTAAATACATTCTGCTTCAGTTGGTTCAAAAGCCAAGGCTAAG-GATGGAAACGGTAAACGTT----------GCTTTTCTACCGTGGAGCTTTGTGAGG-GACAGAAAGCAACTCCTTACACAGTATGCATTCCTCCTCTGAGACCCCAACCCCACCCCGGAA-------GCAAGGGTCCTCCCCTTTTGTT--CTTGCTTTTTAGCGTACGAAGGCTCTCCTTCCTATACTGTTGGCATCAGTTAGGGTGTACT----------------TTAGTTTAGCAACCTAGAATGTTTGTAATCA-AGCAACGTCATCTTTTATCTGATGCTATTTTATTTCTCACATACAAAAAGACA
s HiC_scaffold_1 136173765 877 + 233722169 TATAAGCATATAAATTATACATAAGTCAATTGCTAAGGCATATATTTTGGTTCTGAATTATATATTTGCCTGTTCTGACAGAATAAAAGAACCCCTACCAACCCTTCCTGAT---agtttctgtcttggagtcacAAACAATAT--TTCTT----------------ACCTGAAGGTCTCAAGCTCCAGACATTAGCAATGAAGACACAGTCACA---CGCAGAAGGAGC-----TGTGTTTCCATTTCCACCCTGTGTTGGAGCACATCAAAGACTAAATAATCTAAGGCCTTTCTAGTGTG------TGCGCAGGTACACCCCAAGAGCACGCCACTCCTTCCATTGTCGGTGATAACAAGC-ATCCAGGGCCATGAAACATTCAGAACAATACACTTTGAGGCCACTACATGTCAGCAAGTTCTCAAAGGTTGTGTCACAAAAAAGTCAAGTAATTAAACACTGATTACTTactgcttaaagaaaaaaaaa-atacgacTGGGAAAAGTTGGATTCAGAGGGTCTAATTTCACACAGTAGATTTCAGTGAAAATGAAGCCTTTAGCCTTTAACTATATTCTGCTTGACTTGATGTGAaagaaaaagctaagaaaaagagATTATAAAAGCTATTCATGACCGTCTTTCTGCAGCACAGCTTTGGGAGGTGACAAACAGCCACTGGTAATTCAGTCATCTTTTCCCCAAACAGCTTTGGATTCCTTTTCAAAAATCGCCTGCAA--------CTCCTTAGTTGCATTATTTTTCAGAACACAAAGCTCTTTCTCTCTGCACTTTTGGTGCCAGTTGAGATGTCATTGTTCCCTACAAACAGttaattt-----ctaataaattttgcAAACATAGCCAAAT-ACGTTTCACCTGATGCTGCTTTGTGTCTTGTACATTAGAGAGCA

a score=107985
s chr3           149542400 9639 + 160039680 [encoded data, 10702 characters]
s HiC_scaffold_1 136177572 9251 + 233722169 [encoded data, 10702 characters]

a score=21739
s chr3           149552034 1379 + 160039680 aagaactccaaatcataaacgaacaaggaatgaagacaatataaaatcat-agtgtctcataaaaattggagcagatatatttattgatgagtgcaaaa-ctagtgggagaaactt-aaggacacatggaatatgtgcaaagcctggatcctcatattctaatatgtattaattattatgaattgcctgatatttcttccttcca------accaaggacttagttctttaccacatatgtgtggactagacttagaaagccacttccaatgaacagtattgtgat-agagacataagtagtggata--------------ccttcttagtcgaggtcaaaggcaagcatcccccGGAAGGTCTCATCTTATAGTGTCATCAGGCACATCATTGCATGGGACCGCATTCTCCTCA-CAATGAACGGATTCCGATTTGtcatgggaaaccatgagacaaatacaag--aagggtgttatgtagagcacctgccctgtgctcttcagacatgtca-tgaaatgaaaagtagcaa-gaccaagatactgaagaat----tgagtttcttcaggagacatcatggttgaactagag-atgacatgctatgtttgattggtgggtacaaggagacattgaggaatgtcttggtgatgtctaagcatacgtcccaacttggttgatagtaacagactctcattaagtcttagttttaaaaaatgacatgatttgtaaggggttcacatgggggaggctgagtcatgtggtatgtgggaattttcct----------tgccaattttctgaaaaagttagagttatgttaaaggtaaaagtttTAAAATTTGTGTTTGAAAACTATTACTGTTGTGTTGGTAACATGTTAACCTCATAACCTAACATGTTTAGAAACAGAATGTGGGGACAATTCTGCTTAGATGATACACTGCCTTGAAACTCTGAAACTCAAACTCTGCAATATCAGCACTCTGGAATAAATTTAAGACCCCTCCTGTAAACAGTGCTTGAATTCAAATCTGTGTGGAAGAAATTCAAATTAGGACTATCACATTTAGATCAAGTTGTGATAATAGAACATAGCTAATCCATATTTCTTCTCTTCAAGAATAGTCAACAGTATATACAATGATTTTTGCCTACAAACAGTTAGAGATTGTTTTGTAAGGGCCACTTTCTTTTGTCCTAAATGTAAGTCATATG-----AAAATTTGACATGGACATTGAAAGCAAATCTGTTTTTGAAAAGGTT---TCCATAATGAGCCACATTCATTGCTACTTAAAGCAGAATACCATTATATAGCTGGTGAGGAATGAGTGTCTTCattaaataattaaaatttattGCATGGTAAGAC-CCACAATGCTGTACAGCCCTCATCTGTAT-ACTTAGAGTATGTGAAGGGTGAGA
s HiC_scaffold_1 136187245 1341 + 233722169 AAGAATTGCCAGGAATAAATGAATGAccaatgagagaaagagaaaatcatgATTGCATAATAATAATGGCTAGAGACAAATATATTGGTGAATGCAAAAATTACTGTGTAAAACTTTAAGGAAAAATAGGATTCGTTGAAGTTTCAAGTGTTTACCTTGGAATAATATCTGATGTTTACACATTACTTGATATATTTTCCTTAAGTTTGGGAGAGAGAATTTAGTTCCTCATCCTGTGAGTATGAGGTGGATTTA-----CTGACTTCATTTTGAagtatagaaaggaaaaaaaaaaatagtagagaaACCTCGTGAAGACCCTCCTTAGT----GACAAAAGTCAGCATCACTAAGAAG-----------CCATGGCAAAAGGCAGTGCGCTG------------TTCACCTCAACCATCCATAAGCTCAAATAAACCATGAGAAAACATCAAACAATCCCAAACAgaggacattcttcaaaatacttgtcTTATAACCTTCAAAAGTGTCAAGGGAATGAAAAATGACAAAGACCAACAAATTATAGCGTGTTTCGAGGTACCGGAGGGGACAT--GTGTAGAAGTACAGCATGGCACACTAGATTGGACCAATGGAGAGATAAAGACATTGGTACAAAGCAATGTGGCATTTGAACAAAGTCTCTACCTCACTCAGTGTCTGGGAGCACCCTTGGTGTCTTA---------------------TGTGAGATGGTAACACTGGTAAAGCTGCGTGAAG-GTTACACGGGAAATTCCTTGAACCGTCTCTGCTATTTTTCTGTAAGTCTCAATGTGGC-ttcaagttaaaaatttaaaaagttgtgtttGAAAAACTTTAGCATTGATTTATTGACTTGTAGA----ATGACTTAA---ATTTAGAAAGAGA--GGCGAAACCATTTTCTTTATAGAATTTGCTGTTTTGAAACA--GGAGTTC----TCCG----GTTAGTATCACAGACTAAATT-AAGGTGCTTAGCTAAAACTGTTCTTGCATTCAGATGTGTATGGTAAAAATTCAAATTAGGATTATCATATTTAGATCAAGCTGT-----------ATGGCTACTTATGCTTTGCATGCCTCAAGAATAATGAACTTTGTAGACTGC-AGTTTTGCCCACAAGCCGTTACAGATGATCCTGTAAGGGTCACTGTTTACTTTCCTGAATATAAATCATatgcaaaaaaaatcaaagtttgaTGTCAAAAACCGATTTAGTGTTAAAAATTTTCCCTCCATAATTAACCACAAACACACCCGCTTAAAGCGGAAGGTCTTCTTTGAGCTAGTAAAAACTGGGTGTTctgataaaagaatttaaa---attgtgtggtaaaatgctaaaatgttccccaaatccTGTCTATGTGGAACAGAGCAGGTAAAGACTAAGA

a score=28823
s chr3           149555132 2239 + 160039680 AAGAACAAATAAAACTTGAGCTTCCGAGTCTTCCTCTCTCTTCC-----AATCCTTAAAAGAATCCAAACAGAATTTCAGTTCAGTTCAATTAACG----TGGAATCCTTCAACCTAATGTATTTCCAGAGAAAGGTGGGCTCTAGGTTA-GAATTCAATGTCTAACAAATACCCCTTTACACATATTTATGATAATATTG--TAAATTCAATATATAATCCAAGCAGTAATCTCTCTTTAGTGTCCTAGTTACAAGCATT----GGAGCTCCCTACATAACACAGGCTGCCTCACATATGCCTCTGTGTCATTAGTGCTGATGTTATTGATGTGAGCACCCTACTTAAGCATAGAAAAAGTTCAAGGTTGAAATTCTCGAAACACAGATGTTATCGTGACTCATACTACAATGCCACTGTAGTCTCTGTAACAAGAGACTGAATTCTATTTCCAAAAAATTCTAAGCAATTAGCATGCCATAGTCTGTTTATTTGGTTATTCC--ATTTTGTTGAGAGA-TTCATTATTTCACTAGGCTAGGTACATTGCCTGGATATATTT--AAAAGCTATTTCAAATAATTTAGATCAATCTTCCAAGCTTAGGGTTTGGATGCTATCTCTG---GCTAAATTTTACTAGTCCCTCCTGAAAGCTGGTAGCAACA----TGTAAAGATATGGTTCTCTCAGTTCACCTTTCTCGTAGAGCAGGAGACTA-TTTTAATGCATCCTAAAGGGAAATTAAGGTTACTTGTGAATTTTACTTGAAATAGCACTAGAGATTTTAAGTAAATGAAGACTTCTATGGTTACTATGGTTATAAACATGCAATAATTATTAATAATTGAATTCAAAATCACTGAGCCTTGATGTCTGGTCATC-----AACCCTGTGCCAGAATGAAGTGGTGGCAGAGATCATGCTTGATTTTTATCAAACTTT--GTGCCTCCCCTGGT-TGAAAACTC--------------GTATCTGACCTGTGAGAGATGGACCTGGCCCCAGGGTACAGCATCAGCTGCAGTCTTTTCTCTGTAAGA--------------------------------------------------------------------------------------------------------------------------------------------------TTATAAGCCAAGAAGAACACGTGAAGACCTGAAATTCGTCTCATGAAACAATCCTTGGCCTTAAGAATGTAA-TAAAAATCACTAAGTT--------------------------------------------AGTTT-----------------------------------------------------------TGAACATGGCTTTGTTGATGA----------------TTTTTTTTAAAGATTCCAATCAGAGCCTACTTCATCCACCTGAAAACCTGTCAAAAAGTCACGCAGAGAGGTGACTTTTGTGAAGAGTGTTTCTGGCATGGAAGTGACTTTTATGCACACCTGAAATTATGCAAAGGAAAA-CAAGCTGTTCCA-------CAGCCTAACCCCCCTCC-------CCAACTTTACCTTCCTGTAAGCAGGTCTTCAGAGCACAGCAGAGTTTGCACAAAACTAAAGGACCAGCTGAAGGAAGCTCACAGCCTTTAAGGAGTCCTTTAATTCTCCTCTCTCCCATTTAGGCTCTGCAGGGTTCTTAGGCAAGGCTTCACTGAGCAATTAAATGCTGAGAAATTCATCTGTACATCCAAAATTGGAAAGGCGATGAATATGCATTTTTGCCTCTAGATAGGACCCGAGTCTCCACCTTCCTTCAGTGAAGTGACTGCAAGCTTGTTGAGCGAGGATATCCCACAGTGTTTTCAAGTTCACATTAAGTAGACATCATGACACAAAAAGTTAT-TTTTTCCATGCTCAAGAGAGTTGTATAACATCTAATGTGATCAGATTCTTT-CTGAGTAATGAATATGGAAATTAGATAATTGGACTCTGGGAGTGGGTTCAAATGAACTCCAAGAATTTAAATAACTAAGGCCAAAGGGTATGGAGAACTGTGTGCCTAGGAACAACAGTATATGGTGGTAATTGCAAGAGACAGatttttattaaacaaata----ttattaaaattatGTCATAATTGAATACCTCCACAAACAGCCATTACCAGATTGACTTGAGAATGATTCT-CACATCATGAAAAATAATTAATTTT----------ACCTCAAGCAGGTATATTCCTAACTT---TGCATGACTCTGGGGTGAAGATGTGTATTAAATTTAAAGCATAATAGAAAATAGGACCTCACCATGATGTTTCCTATCTTATTACTCAGTTATTTCAGTCTTGGACACACTACACAGATTATCCATGCACAATGAGTCAGGTAATACAGAGCAGTTATCACTCTGTGGGGTTGTCCTCTTGTCTACTTTATATTTTTTATTTACAGCATCTAGATTTCCTTATTGCTCATTTTGGCTTTGAGCATAGGACTTGCTCCAGATACAGGTAT
s HiC_scaffold_1 136190365 2365 + 233722169 agaaacatttaaaGCTTAAGT-----AGTTACtttgtctcattttaaaaaatccttacaCAAATGAGAatagaatatcaattcctgataATTGAAGCCTTTTGACTTGGCCAACCTTATCTATTTTCAAGTAAATGTAGGCTGTTGATTACTAATTCAGTGTTCAACAAACACCTCTTCTCATGCATTTAGATTGTTCTTGAATAAATACAACCTATAa--------gtaatttacacattgttttc-----aTAAACTTTAAATGGAGATTataatgtaaaacag--------aaaaatgtatc----------------aTGTTATAGA------------------GCAG----------TAAGGTC-----------ATCATATATTTT----TGACTT--------------------------TAATcaaag-----------ttttctaaaatttttatacttGT-GAATGCCGTA-----TTTAAGTCATTATTTCTACTTCTGTTAATATACTTCATTGTGTCATCAGACTAAACATATTTatagaataaattttagaaagctATTTCAAATAATTTGGATGTATTTCTCAGATTCAGTTTCTGGAAACTGTTTTTGAGTGGTAAATGCTCTTA-TCCTACCAGAGGATTCATAAGAACAGACCTATAGAGATTTAGAACTCAAAAGCAATATATCTCACTATCCACATGATTAAGTTTAATCTGTTATAATGGATACTTCAGTTTGTTTCTG--CTTTATATGAAACAACATCAAAGATTTTAGg---------gctccattcatt--cattcatccatccattcatttatt--cattcattcaacaaagatTCACTGAACACTTGTTTTGTGTCATCTTTCCAGGTCTGACCCAAAACAAAATGTTACCATGG-TGAAAGTTGATTTCACTCATCTTTCCCATTCACTCTTTGTTATGGAATCTCTTCTCAGGATGTCAGTATTGAATCTTTTG----TGTACCTATCTCTAG--TATAGCAGCAGCTTCAATTTCTTTTGTGTATAAATCAAGTACTATCCAACTATTCTTGGTTCAATCCTGGgcaatgtatttgttttttcacaaGGAAATGTCAAAAGTCTACTACTTTGTCCTAGAAATGTCTTTTAAACTTTAAGTGTGTCTACTCAtggtaagaaatacattttacgTCATGACCTCAGAAATACTTGTGTATATCTGAAACACATTTTATGAAACAATTACTGccccaaacaatacaaacaaaaggcaagaaatttagctcagtggtgtaagcgcctgcctggcaagtgtgaggtcatgagtttgatccctgacatcaaaacaaacaaacaaataaataaatattttaaaaatgcacaaatagTGAATATGCCTTTATTAATAACAAATTCTAATATTGCTTTCACTTTGATTTCCTTAACATAACCTACTGAGTATATCTCAAGACTTATTAAACTAT------------TGACTTTACTGAAGC-TGTTTCTGGCATAAAAGTGGCTTTTATTCTGATTTCAAATTATGCAGACAAGGGGCATGCTGTTTTATATCATTCATCCACATTTCCTTGCATGTGTACCAGCTGTACCAACTCAGGAG----TCTCCTGAGTAGACTGATGTTTGAACAGAAGGGAAGCACCCTCTGAAGAAAGCTTACAACCTTGAGAA------------TTTCTCTTTATAGTTTAGACTCCATAAGATTCTCCAGAAAGACTTCACTGTGCAATTAAATG-TGAGAAATTTGTCCATATA-CCtaatttggaaaggaaatgaaTATGCAGTTTTGCCTGTAGGTCTAGCTCTGGTCTCTTTCTTCCTCCAATCAAACAAGTGGATGCTTACTGGATGAACACCTCTTGTAGATTTC--------------AGCAGGCATCATGACATGAAAAGTTATCTTTTTCTACGCTCAAGAGAATTGGATAGCATCTAATGTGATCAGACTCCTTACTGAGTAATGACTATGAAAATTAGATAATTAGACTACAGTGGGAGGTTAAAGTGAGCTCCaagaattgaaataaataagacaaaatcaTGTGGGTAACTATATGTCTAAGAG----AGTATGTGGTAATAGTTATTATAGAGAACAATTGTTTAAGCCAATAATTCTTAATGTAATTGTTTTATAATTGAATTTCACTATGATCAACTTTTTCCATAATTACTTGAGAAACATGCTAAACTTAATGGAAGATACTTGTTTATGTATTTAGAAATCTTAAATAGTCATATACCTGATTTAAAGGGATAATTTTGG---GAAAATGTCTCTTAGG-CCAGGGTATAAGTAAGGATA------TATCAAAGTATTTCATAATTTATGATTAGATTCTTT-AGTTTTCAGTACACTTCATCAATAATCTATGTTTAACCATGTAGAAAGTACACAACATTTATTTCTGTGTTCAGGTA-CTTGTTATCTG--TTAAACTTTCAATT------GTCTTAGTTTCCT-----ATTACTTTGG-TTTGGTCATATGACCACCTCTGCTTATGGCTAT

a score=46982
s chr3           149559430 2731 + 160039680 CCCATCTTGTGTCAGAGCTGACTA-AATCTGGCATCA-----------AACAACTCACTCTCCTCTTGTCCAAGTGGATGATCAGAGTGAACGAATACATTTTCTTCAAACTGACTGAAT-ATTTTCGAGCCAATATCTTTCTAATCCATGTAACTGGAATCCCTCAACAGCCAACTGGCAAATTAAGAGTCATCTCTGGCTCTTGGAATCAACTTCTTCCCAGGGAGAAGCCATTTATCTTCTTTAGGCTAATGGCTACTGGAGTGAGCCACACAGCAGTTTGCT-CTAGTTC-TTTTTAATATTGGATATCCTTCCTGGATTCCATTTTGACTCTCACTGAAAGAACTCCTAGGTCCTGACCCACCCCTTTGAGAC-CTAGAACTGCTTTTTTGTGCATAGAAATGTTGGTAAAGCTTTTTATACCAAGACACTTAGATGGGTTAAGAGACACTTAGCACTTCAGA-TATTCCTCTGGAACCAGTCAGATTTGAGTGTGAAGTTTCAATGTGGGT------------------------------------------------TTTCTTACCTGTGTAGGGGATAAAAT--TAATAGTTTCCTCACACAAACACGGC-AGGGTTAATTTCGACTGCTCATATGAGTTAGGTAGAACTCTTTCAAAGGGTGTGTAACACTTTCCTGAAAAT---------TGACTGAAAGTTCATGTTTATTTAGTCTTTATAGTGAAGAGATCCT-ATTCTTTCCCTCTGTGTTTGTGTGTGTGTGTGATATGTACTCTATATTCCCT----TTCTTCCACACTATT---TTTTTCATATGCTGATGGAACTATTGTCTAGTCCAGATGTCAGGATA-Gattctccattcctgtctctcctcacact----tacatggaatttgtagaatcttccctttagcgctacctcaaagcattccctggagtgtacaatccttcttcatttccctt-ttgactactttagtttaagttaatgtaatatcttatctagactactgcattggcttttctgtctcatttttctaaagtctttcttcctccccc--acaaactaATGTTTTAAAACACACAATGGTCACCATCACATCCTTTCCTTAATGTTTTACTGAGACTTTTGATTGAA-----------ACAATCTTTTTATTTTCCCCCATGGCCTTTAAATCCATCTGAAAGTGCCTTTCAGGGAACCCTTCCACCTCTCTTCCTTGATGCCGGAACGGCTTTGCTTTCCTTACCACTGCTTTTTTCTTTACCTGTGCTATGCTTGCCGTTCCCTTTCATCTTTGTGCTTGCTCTTCTCTTAAGTCTGGGACAGTCCTTCCCAGGCTTTGCCTGTTTGGCTTCTTCTTGTGATTCATGTGTCAGC--GAAAGATCACGATCTCGGAGTTGTATTCTTCTAACTAGACCTCACTCC---AACTCAGTCATTCTCGGCCTTATTGCT-----ATCATCTATTCTCT--CAGTGCAGAGGCCACTGTCAGCAATCATTTTAGTTTCCATCTGACCTCCTCATCTCCCAAGAATATAAACTTTCCTCTCTCAGAAGTTCCCATTCTCCTTTACATCCCCAGCAGCAGA---AGAGGGGAAAACAC-AGGGCAGATGCGTGATAAATATTTGATGCACCTGACTCAGTGAATGAGATTTGTGAGTCTCTACTTCTCTGCCTTGCTAACATCATTTA--GAAAAAGAGACAAGAAATTAAGGAAAGGTAAAAGAAAGCAGTAACTCCATGAAGAATTTTGCTGCCTTTTCAACAATTAGACACACACACTTCAGAAAATGTCAGGCCCTGTAGAGCTGAGCTTTTGAGGGTGTGTCTCCAATCAAAA--GGAAATTCTTAATTCCATTTTCCACATCTGCATTAATAATG--ATAATAGTGATAATGATAAAACTATAATGGGAGCAACAGTGTACAGAGCAAGGACAGCATTCTTTTCTCGTGCATTGTTTTAAAGACTGATTTTAGTACTGTTGGTGATTTGTGTCTTTATCTATAATGATATCTTGGGGGTGAATTTAGTAAGAGAAATAGGAAATAGTTCCAAGTAGTCAACATAATAACCTATTTACTTTTACTACTACTTTTTTCTCATTGAGATTTACCTTTAATTCATTA-------------------TGAGCTCAATTAAGGAAGAGTGTATAGTTACTGTAATTTGGGTATGTTATTCAAAC---TTCATATCCCTTC--------------TCTACTCAACTATCCTGAATTTTTGACATCGACCACAGGGAACCAGAATACCTTTGGTTACTTGAACGATGAGAAATGTCATGTTGTTAAACTGAACCTCAAGGCACATTGTCTT--GTGTTCAGAAGCACTCTTTTTTAAATACTCAAGGGACTTGGCCATTATTGATTACAAACAAGACAGAAGAGTGCCTACAAATATGACCCTTAACTTTTGTAAATAGCAAAGTTTAGGTCTGGGCAGATGAAATAGAGTAGGACATTAATATAGAGGAGAGAATGGCAATACACACACAACAGCTTTCTTTGGAATATTTGGATTTCTTCTAAGATA--TATTGAAATCCTTTTGTCTGTTTTGATGCAAAACCTCCTACACAAA--GCAATGATAGAATGAT--GCAT----------GTTTAGAAG-GAGTATAATTTCACGTATTTTCATGACGTCCAAGGAAACAAAGGAAGAATAGTTATAGAGGTTTCTAGAACAAAGCGGAAAAATGGTAATGACAAATAAGGGCAGATGAAATCGCTTTTATTAGGCTAAGTTGAAATAAGCTTTGTATTGTATTTATGGAAAAAATCTGCTTGGAAATACATTTTTGTGCCCATCTATGCATGTGAACAT
s HiC_scaffold_1 136197746 2676 + 233722169 CTTACCTAGTATCAGACTCAGCTAGAACTTGACAGAATGAACTATCTCAACAACTTACTCATGTTCTGTCCAATCAGATGATTAGTATGAAAGAGCAAATTTCTTTCAAACTGACTGAGTCATTCTGGGACCAGAATCTTTCCAATCCATGTAACTGGAGTCACTTTAGAGCCAACTGGCAAATTAAGTGCCATTTCTAGGTCTTGGAACAATCTTCTTCCCAGGGAGAGGAAATTTATCTTCCTTAGTCTAATGGCTATAGGAGTGAGCCAAATAGCAATTATCTCCTAGTTTGCCTTTGATACTGGATCTCCTTTCTGGATTCTCTTTTGATTCTGATGACCAGGCCTTCTAAAGCCAGATCCATTCTCCTGAGATGCGAGAATTGCTTTC---TGCCTTAAAACTTTAAT-AATCTCTTTCTTCTA----ATGTGGACAGTTTTCTTGACAATGAGTGTTCCAGAGTTGGAATCTGGGGCCAGTCAGTTCTGCCTGTGAATTTTCAA--TGGGTAAATATTGTTTTTTCCCCCACAAATCACATAATCACTTGAAACCTTCATTTCTCATCTGTATAATGAATATAATAATGATTGCTTCCTTACgggaatattttaagaattaattgTGATTAGGCATGTAATTTAGACAAGATT-------------------GCTTTCCTGGAAGTGTCAAGCAGTAGCCAGGGGTCCACGTCTACATCATCCTTAGACTGAAGGGGGCATCACTCCTTTCA-------------------GAGACA-GAAATCTTGATTTTCTGACCTTCTTAAACTCTGCCAAACTGGTCATATCC------AACT--------TTCAGGCTTTCAGGAGATGATTTCATGTCCTCTCctttccttaaatttttataCGCAACATTAGTGA-----CTCCTTCTGGGTCAACCCAAAGCATTTCTTGGACTACATAGCTTCTCATGATTTTCATTCTTAACTATCCTAACTCAAG----TGTTATATGTAATCTAGACTACTGCAGTAGCTTGTAAATCTTGTTTCTGTAATGTCTTATTTTCACATATGAACAAAtggatactttaaaa-atataagccCTATCCTAGCATCCCTTTCTGAAAACTATAAAGA---TTTTGattcaataaattcaaacaaaatctcACCATATTCTTCAAAGAGCTCACTTCTGGTCTGTAACTAACTTTC-TGCATTCATTTATTCTCTCGGCCATG-TACT-------TTTTGATTGTCTTATCA---TCTATTTCCTTATACACCCTAACCATGTTATTTCCTTGAGCTTTTGCACATGTGGTTTCCT---AGCCGGCCTATTCTTGGCCGGCATTTCCCTGATAACC--ATTCTCATGATTTAGATATCATCCTCAACAATAACATCCTCACAGTTGCCTTTTGT--ACTA----CCATTTTGTAAGCGGGGCTACCCTCAGTCTGGTCACTGTTTCATCATCTATTTTTCTACATAATAAATGCTATACTctggaataattttaatttacatctaACTTCCTGCTTCTCTAAGAAAGCAAACTTCACTATTTTACA---TCACA-------TCATATTCCCAGCATTGTATTTCTGTGTGAAAGCACAAGGGTAGGTGTGTAATACATATTTGATGCC----------------AGGTTTGTGAATCTATACTGGTTTGCCTTGCTAATTGCTGCtaggggaaaaaaagtgaaaaagcaaaGCATG--AAAAGAAGAGTTTGTTTTGCTAAGGACTCTTGGTATCTTTTCAACAACTCGTAGTGCA------AGAAAATGACAGGCCCTGTAGATCTGATCTTTTAAAAGCACACCTACAAAAGAAATGGGAGGCCAGTGCTTTCCTAT--CACATCTGCATACCTAATGGAACAACAGtta-------------gcaacaagagcaaaactcAGAAACAAAAGGCCAGAATAGTTTTCT------TTATGTTCAAAccagtttttaa-attgttgatgATCTATGTTTTTATCT---------TCTGGAGAACAAGTTCTTTAGGGGATTT----AATAGGTACAGGAAGTAAATATAGCCa-----tgaattctaatttttattttatctctttaagatttatcttaattttagtaattaaaattaataactttttaaGATCATCGAGGGGAAATTGTTTGTTTA-----------ACATGGAATAGAAACTCTTTTATTTCCCATCCAGGAAAAAATGATTCCGTTCA--TATAATGATTCTGTG-------CTGGTATGACTTAGTATTTTGGTATTCACCAAAATACTAAGACATCCTTT--------------CCACAAGGTGCATTGTCCCCAGTGgtctgaaacatttatttttgaataaccAAGGCACTAAAATATTATTGATCAGAAAGAAGATTGAAGA--GCATACAAATATGACCTTTAACTTTTGTAAATATCAAAGTTTATGTTTGGGTAGACAAAATACAGTAGAATATTGATACTGACTAATGAATGTCAATATGGACATGGTAGTTTGCCTTAGAACATTT-GATTTTGTTTAAGGTAACTTTTCAAacttctttgcttgtttttgt-ctttatgtccaaaaaaaatgacaatagtAGATTGATAAGGATAATTTTATCAGTTTAGAAGCTAGTgtaatttcacatatttttatgaaCTT-----GAATTAATGGAgaataaatacaaacatttatggaacagaaagaaaaa----cagaggcagATA-------ATGAATTCAA--TTATTAATATAAGTTcaaatgtgcttt-tat----tttaaagaaaagccaTACTTGGAAGTCTATTTGTATAAC--TTTGTACATgtgtagat

a score=24967
s chr3           149566906 881 + 160039680 TTTCTCT--TGGGCAAGCTTGAGCTGAAGACGAAGACTGTGGCCA-CACATTGTTTTACTCAATAGTTGATTTCATTTTTAAAATTCTCTTTCAGA--GAAGGGGTCAGGCGACTAAGTGATTTGAAGCAGCAATGATGGGGTAAAGGCTACCACAGAACTTCCTGAGCAATG---ATCTTGTCGAGCATGGC-TGAGTCA--------------CAGTTCTGTGTCCTCTGCCTGGAAGCTTT--TTTGAAGCAGAAGGTAAATTGCGTAAACAGTCGCTGGAAGAACAAATGATCC--------------CCAGA----------------AGCAAAATATTAATACATAACAGCTAAAAATAGGCAACATTGCCTGTGTAGGAATTCTGGGTGGGACCTTCTGACCTTTGTCTTTCCCTACAAATGGATTTGTGAGGCTAATGGAGGTTTTATGGATATTAGGTACAGAATAGAGAAAAGAAACCAACTTACCCTGTGAATTGAAGAAGGATATGGACTATTTCTGCCATCTC-AAAGACAGGAAAAGCTTGCCACTAGGCTGATCTTGCCCATCTCTGATTGTTAGTGACGGTCCAGATTTCAGAGCTTGGCAGTATATTGTCCCTAATATTTCATGTTATTCTGTCTCTGTTTATACATCCCTGGCAGACATGCATTCCAGTTT-AATGAGAAGCTCTTCCTAAAAGATGTGCTCAAAGGATTCTATTTACATAGGCAAAGTTTGAGAAAAGACAGATTCCAACCTTTAATTGTGAATCAATGCATAGCTTTCAAGGGGTCCAGAGGGG-------GGAATAAGACAATCACACTG--------------------------------CCATGTATGGTTCTTAGAGAAGAAAAAAAATCGTGAGATTGATTTAATAG----TCTTGGGTTT--AGAGTCAAATATTTAAA---CTTTTAGTTTTTAAAAATGGCAAGGTT
s HiC_scaffold_1 136205077 949 + 233722169 TTTCTCTGATTGACAAAGTTGAGCACATTCAAAAGACTCTGGCCAACTCCTCTTATTCATCAATACTTATGATC-TTTTCAAATCTACCTCTCTGCCCGGAAGGTCCAGTTGTCTCAGTGAGTTGTAGTAGTGAAGAT----------------CAGAACTTCTTGAGAAATGCGCAGCTCGCATAACACGTCATGAATCAGTGGTGGGACAGCCCAGCTCTGCTGCCTCT--CTGGCAATGTTACCTGGAGGTGGGAGGTGAATTGCTTTTGAA----CTGGGAGAACAGAAGATCTAACTAACTAaccaactaaataaaaaatatctgactaaccaaattttaaaaaccagcaaATAAAGATAGGCAAACTCGACTGT--AAGAATTCATCACTGAACCTT-TGATCTCAGTCTATGCATACAAATGGATCTGTGATGCTAATGGAGTTTTTATGGATATGAGGCATGGAA-------AAGAAACCAACTTACAGTGTGAGTTGAAGGCAAAAGTTGCATATTGCCACAGTCTTTGAAGACATGACAAGTTTATCAACAAGCTGATCTTGCCCATCTATGATTATTAATGGCTTTCAAAGTTTCAGAGCTTGGCAGTATATTGTGCTCCACATTTCATATTATTCTGTCTCTGTTTATATGCCCCTAGTAGACACACACTCCACTTTAAATGAGAAGCTCTTCCTAGGAGACAGCCTCAAAGAATTCTGCTTATGCATACAAAGCTTGAAATAAGACA-CTCCTAACCGTTAATTATGAATTACTACCTAACTTTCAAGGCGTGTAAAAAAGATGgcaaaacatgagaaaattatgctgttttctttctttctttctttcttttattctttctttctttctttctta---aaatgacaaaatcttgAGGTTGACTTCACAGGGATTCTTTGACTTTAAAAGCTACATGcttaaaactcttttttttttttaataaggaaagATT

a score=105285
s chr3           149568235 3764 + 160039680 AAAAGGAAAGGATACAGCCCAGGTGACATTGTCAAGAACAAATGTTACTTCTTAG-TCCTTAGCTTGTGGCCACTGTAAGACCCAACCCCCAAGCTGTTCATGTTCACCCATGCGGGCATGTGGATCTCACCATTCTCTCGTCTGGGTACTTGCTTTCTAGCACAGAGCTCTGGTCTGTAAGGCATTT-GATTTCCAGTAATTAATCAGCTCATCATACATGCTGTGTTTCTCCCCCAGGCCCAGATCAAGTGAGTGATCCGAATCTGGCTTGAGGAAAAAAGAAATCATTTGTGCTCTGAGTGCCGGGAATGAAGCACTGATAAACAGTTGTAGGGAAAACA-CTGAATTTAAATGGCATTGTTTTTCTTTCCAAGCTATAAGTCATCTTTAAAAAAATACACATAGCAAAACCCCTACAACAAAACAAAAGCTAAGCAAAAACACGTTGGATGCCCTTTAAACAGAAATCATTTTGCCCTAATAAAAAGAGTTATCAAGATTTGCTGGTG--TGGGTGCTCTGCTGCCT---CCATCTCAGGAGTTTGCCTGGAATGTTAATGTTCATTCGTAAACACG---TCTGTGTTTGGTTC--TGTCTATACTCCTTTATCTCTGGATTTCTTGTTTGGCTTGTCTCCATAATAACCTAGTTACTACTAATTTTATCAGTTGCTTTGAAAAATCTAAACTTGTATTAGTAATTTGTTATGCCTCGAGATTCAGCAACTTTCATTCTTTCCAATGACTTTCCCGTCTGCCTGGACAGACATTTGT-TAGTTGGGTTTTGTTGTTGGAACAGAGAAGATTCTCCTGTATTTGCCTTGCAGGTAATTTTGAGCCTTCTTGTTTTTATAAATAATGGAGTCCTGTAATAGGTTCCCAGTCTTTGCCAATTATTCTGCTCAAAACTGAGatcaatcaatcaatcaatcaatcaGTTGTCAGGAACATTTCTGAATTGGCTGTGTCTGATTGATGGAAGCTATGCTTGAACGTTAAGCAGCAGGGAGCATGACGTTTCGAAACTATAATAAACTTTCATGGTTTCT-AAGACAGCACGAACTTCAGAGAATGCCCACCCCCATGATTTTCTCCAACTCTGTTTAGATTACTCATGTATATGAAGCAATAATCTTATCTTAAAGAATTATTTCCT-CTAGCATACACCCTCCAGGATTTTACAATGATAGGTTTCAGCCGCAGTTCTCAGGAGCCTCAAACCCCCCAAGATATGTTAATCCTTTCTGGAGAC--------TGCAGATGTGTGAT----TCCCACAATTGGGTACAGTGGTTAGTCAGAAAGACATGCTGTAAGGTCCTACAAT-------GTAG-AGACAAACCCACAATTAAGATGGTGGAGTCCATGCTACTGGGACTGAAAAATCTGGGAGATGTGTATACATACATATGTCTAAATTTGCATACTTTCCTATCATGTGTAGTTGAAACACCTTTCAGAAATTAATGACATGAAAGAAGGTAACAGGAACAACAACAAGC-GTATCTGTGCCAATACATGAGCTTCAGAAATTGAGTTTGAGCCTCCAAAACTGAGAATGCAAAGACAGACTGGATTCCTGGAAGCTGTTTTCTCTCTTCCACGTGATTGCCCGGCAAACATGTCCACATTcatacacatactcacacaaacacacaataaaacacaccacacacacacacatatacCACATAACCACACAATACGTTAGATACAATTTTTTGTGACTTACACGACCTTCTTCCTCTTCCCATGTCACCCCCAATGTCTATGGAATTCTTCTCATTGGCTAGATAACTTATGCTTAGCCAAATAAAACTGAGGAGCTGT-ACTGTTTGGGATGCATTTATTGAGGTTGCTATTTATATGTACTTAAGCATTGAAAGTTAAAGGAGCTATTTCCAGCACATTATCCATTTGTACACCTTTAACCCACCCCATCGCCTCCTTCTTGGGCCTCCTGTTGCCAGGTGATAGAAAGATACCTGGTTTCTAGTCGGGGTCAGAGGCTTTGTCATGATGGGAG--------ACACACTCATAAAGGAAAGCAGTCAGGGGCTGCTCAAATAAGGCAAAGAAGCCGCCTCTGAGCTCTTGTTTGTTTTCCTTCAAAGCAGCTCACATACAAAGAGAG-GACCTTGAAGTCGCAAGTAAATGAGGCAGACTCTTAGCCAAGTGGGGAAAAGTGCCCGAGATGTCACGTCAGATAGTGCTGTTTCCATTCTTTTTCTGCCTCTTATTTATAAGCATCCCATCCATATAAGTAAAATAAACCACACTGGGCTAGAGCACCTGTGAAATATCCAAATCTCAGCAGGCTGACCGTGAACACTCACTC-----------TTCTGGGTTGTCAGGATCAAAGAAGACTTCGACGTTTATCAAAAAAACTTAGCCCACCATGGCTTAGCCTGCATTAACATGGAATGTATTTGAAGAATTCAATAGAGCGAATCTACATTCAACTAAGGTTGAAGTGAG-TTTTTCAATTTAGCAAAGAGCTTGCCCTCTTGGAGAGGTAAGAATCAGTTCTC-AATATAGGTAAGGT---AGAAGAACGGAAGGTTCCCACCAGTTGTCATTGATGGGATATCTTGAGTCAGGATG---TGACTTCAAGGGTTGACCATGGAGAAACCTAAAGATAAATGTCTCCATTATA---------CAACAGTGAATTGAGGTGATGTAGGGTACCATGCTGTCTATAGACAATGCAATTATTTTACAGTTTACAT-TAAAATTATGTTAAATGACAATA--CTGGCTGC-AACATTGTATGTTGCTGCAGACCACAGAACATAAGCAGAGTAGATCTTGAAACAAATCTCATTCACAGATCTATTCAGTGTAGAACAGCCCGGAGGATACTTAACGGA-------TCTACAAAATTTGCTAGGAAGGAAATTTACCTTTTAAGAAGGCAGATTTATTTGTGGTGTCTTTTCTCTGATGCACAAAAGGGTGCTT----CATCCATTTTATTTAGAAATTCCAGTGATTTTTCAAAAAAAAATTCTGTATTTATTACCACACTTTGGTGTGTTTCTTCCATAGAATCGGG-GCATTGTCTGTGCTGTCAGGAAGAGTTGAAGGTGAGTTGAGTACCAAAAACAAACAAAGAGACAGACAAATAAAACAGGAAAAGAAAAACAGAACAAAATCATTTCCATCAA-----AATGGTTTGGTTTGGGTGGAAAAGGAAATTGCTTTGAAGAAGAGA----GAGCCCGTCAAAGAACCAGGAACTTGCAAGATCAAGTCTCATGTTGAAGTTTCCAGGCAAATGTTCCAGGCTATATTCCTGTGACTTAACGAAGT----------AATCTTATTTAATATAAGATGTAATACACAATAAAAGGCTTTTCTTAAAGAGAATGATTAGAAATAATAATTTGTTA----ATAGACTTTGTTTTCTTTCACTGTGTGCTTTATTTATGCTTCAAAAATAG------AGATTGGCCATTCACTCCCACAATAGAGCTCTCA----------TTCCCGATTCATTACCTTCCAGG---------------TCAGTTTCCTCTCCTGCTTCTTCTAAAAAAAAAAAAAAAAAACACTTTAGACAATAGAGCTGGTGTGCATGAATGCACAATGTTATAATTATCAGAAAATTTC----AATTAATTTAGATAACTATAGATTCAGTGGCAAGTCTAGCCTTAGATGTCAC-CTTGCTGTGGTATAGTTTTCTGTTTAGGTGGCACAAGGCATCTTTTTAAAACTGAGGCACAGGTAGATGCAGGCATACATACATATCAGTCCTTCAATCAGGGACAATGTCACCATCATTTCAATACAACATTTCTCTTTGTCAAaatcaaa
s HiC_scaffold_1 136206012 3634 + 233722169 aataaggaaagATTCTGCACAGGTCACACTGTCAAGGGTAAACAATCATTCTTAAATCCTGTGTTTCAGGCCACAGTGAAATGTAATCTCAGAGGGGCTGGTCTCTATCCACGCATGTGAGTAGTTCCCCCTATTTCTCCAGTCCTGTTCTTGCTTTTAAGCA--GAGTTCTGCACTGCAAGGCATTTTAATTTCTGGTAATTAATCAGTGCATCATTCACGCTGTGCTTCTCTCCTAGGCTCAGCTCAAGTGAGTGATCCAAATCTGGCTTCAGGAAAAAATATTGCATTTATGCTCCGAGTGTAAAGAATGAAATACTGATAAACAGTTCTTGGAGAAACATTTGAATTCAGatggcattatttttcttttcaagccataagttgtctttaaaaaaatacacatagcAAAATTCTCGAACCAAAACAAAAGCTCAACAAAAACATGTTGGATGCCCTTTAAACGGTAAGCATTTCTTCCTAAT-AAAAGAGTTATCAAGATTTGCTGGTATTTTGTGATTTTGGTACCTCAGCCTTTTAAAGTGTTTGCCTGGAATgttaatgttcatttttaaaaacaccttcTTTATTTGACTCCTTATCCATGATAGTTTATCTCAGAGTTTCTTGTTTGCCTTGTGTCTGTCATAACCCCGTTACTACTAATTTTATCAGTTG---TGAAAAATCTGAACTTGTTTTAGGAATTTGTCATGCCCATGCCCTTGGCAACGTTCATTGTTCTCAATTACTTTTTTGTTCGCTTCAACAGCCATTTGTAAAGTCAGGTTTTGTTATTGGAACTGAGAATTCTCTCATACATTTATCTTGCAGGTAATTTTGAGCCCTCTTGTTTCTATAAATAATGTAGCCCCATAATGGGCTCCCTTTTCTTGCCAATTATTCTGCTCAAAACTGAG--------ATTAATCAATCAATCAGTTGTCAGAAGCATTTCTGAACTGGCTGATTTTGATTTATAGAAGCTAAGCGTGAACGCGAAGCAGTGGGAAACACGGCATATCAAAACTATAATAAACTTTAATGATTTTTGAAGACAGCGTGAATTTCAAGTAATGCCAACCCACATAATTTT-TCCAAGTCTGATAATATTACTCACGGTTATGATGCAgtaattttatcttaaagaattATTTCTTCCCGGCATCTGACTTACAGTGTTTTACAATGATAGGTTTCATCTGTGCTCCTCAGGAAATTT-TGTTTTCCAGAACAGGTTTAGTATTTCTGGAgatatttttgatactgggggGTAACATGAACCCACATCTTG-----TGGGTTGAACTTGAAAATACCTCCAAAACACCTACAGCACCCAGGGCAGTAGATGAATAGACAATCCAAA-----ATGTCCAGGATGCTGAGATAGAAAATTTCTGGA-----TTATATTTACGTGTGTTTATAAATGGATAGCCTCACA-AATTTGCAAATGAAATGC----------------ACATCTAAAAGAAACACAGAGGCCATGATGATCAGTACCCACAAGAATTCTTAGGCTTCTT---TCTAGCTACAGGCTTC-------------CCAAGAGAAACCAACCTCCTG---------------------------------------------ACTTCTTTAGATATGTAAGTGGAATTACAAAGT-----------CAGTTACATACATATAC------------------------------TTTGTATCATTCATAGAGATGCTTTCCAGTTTCTATTTGAATACTATCTTCTATCGAATCCTACAAGTTACATTCAAGATTTATTCTGAgtcaaataaaatagagaaaatgtggcTG--TGCATCACATTTATTGAGATACTTCTTTCTAGTTGCTTAACCATAGAAGGAGAAAGTGATAATTTCCATTCATTGGTCTAGTTACACACCTCTAGTTTACCTTATTTCATCCTTCTTGGGCCTCTGGTTGTCAGGTGATGGAAAGACACCCGGTCCCTCATCAGGGTCAGAAGCTTTGTCCTGATGGGAAAAGGAGGCACAGATTCATAAAAGAAAGTAGCCAGGGGCTggtcaaataaagaaaaga-----------agcttttgtttgttttacttcaaCCAAACTTGTATAGAAAGAGAGAGCCCTCGAAGTCACAAGTAAATGATGCAGACTCTTGGCTAGAAGAGAAAAAGTGCCATATATGTCGTGTATCCTTgtgctgttttcaat-ttttcctgctttttagtTCTAAGCATACCATccacataagtaaaataaaccacagTGGACGAGAGCTTGAGTTAAATATCAAAATCACTGCATGCTGACCGTGAAAACTCACTCATGCTGAACATTTGTGGGTTATCGGGATCAAAGAAGACTTTgatatttatc-aaaaaatttaGCCCACCATGGCTTAGCCTTCATTAACTTGGTATGTATTTGAAGAATTCAATAGAGTTAATGCA-----GACCAAGCCTGAACTGAACTTTTTCAACTTAGCAAAACACTTATCCTCTTGAAGAGATAGgtatcagtttttaaatattgGCAAAGGTCAGAAAAAACAGAAGGTTCACAC--ATGGTCATC--TGAAAGCCCTGTACTCACAACAGACTGAATTC-TGCTATGTGCATGAAGAAACACGAGTACCAATTTGTCTTTTGCATAATGCTTCTAATACTGAGTTGTGGTGCTACAGGAAATTTGACTGAGTTCAAACAACACAACC-TTTTCTAGTTTAGATCCAAAATTCTTTTACATAAGAAAAGCCTCAATGCAAAAACTGTGGGCTGCTGCAGACCCCAGA--ATAAGCAGACT---TCTTT-AACAAATTTTGCTTACAAATTTGTTCCCTACAGGGAAGTCTGGAAGA--------GGACGTGGTCTCTCCTAAGTCTGAGGTGGGGGAATTTTAACTTCCAAAAAGGTCTATTTGTTTATTGTGTCATTGCTTTCCTTTATAAA---GAACTTAGAGAAtccctttaatttaaaaatttcagt----------atgATGATCATTTGTGTGTT---ACATTTCAGTATGTTTGCTACTTGGAAGCAGGTGTGTTTCATTCACTGTTTCTAA----TGAA---------AATAGCAACATTGAGCATAGGG--Tagcaatcaaaa---------------agaaaaaaatcttttgcatCAAATGTTAAAGG--TGATCCTGGT-AATAAGGGGAGTATTCTGAATAAGAAAACAGGAGCAAGATAAGGAGGAATAAACTTGA-----CAACTTATATCATGAACCTTCCATGTAAACACTTA-----GTATAAATATTATTAGATGAATTTTAAATGTCCTACCTTATTTagcataaaatatta-acataataaaaa--ttctaCGAAAGGGATTTACTATTTGCATTATTGTATTATGCCcccacctttcttttctttt-tttttttttttttttttttttgagacagagtctcacaggCTGGCCTGTAACTC-----ATGGAAATCCTACCGCCTCAGCTTCTCGAGTTCATGGGTTACAGGAGTCCACCACTATGCTTGGTCTCCACACCTCTTTAT---------------AAGAAGCAATTTGGGGAATAGAGTTGTTGCCAGTAAGTATAAAATGATGTAATTACTTGGAAATGTCATCAACTTAATTTCTGTAACTATAGAATTAGTAATAAGCCAAACTTTA-ATGTCATGCAAGTTGTCTTAT-TTTTTTGGCATGTCTCATACAGGGCATTCTTTGAAAACTTAGACACATAGCATTATAA----ACATTCACATCATTTTACCAACTAAAAAGGTTTTCAATGTCATCTTTAAATAAT-TCCTTCGTTGTGGGCTTCAAA

a score=75862
s chr3           149575447 3417 + 160039680 AAAATAGGTACATCAGTGTTGCCATATAAAATTGCAAACTTGGAAAGTGTA----GAGCCATTCAGGCTTGGAT--GGGACAGAGGAGAACTGATCTGTGTATTAATACCACCACTTAATTCAGcctccagtgggagagttcataacattcaca-gagcagctga-ttcaaattttAATACTTGCTGTTCTAGAAAAAAAAATGAGTACCTTATAACACTGTGAAGTGTGAAGAGAATAAAAATGTTTGATATAAGGCCAGTTGAAGAGCCTCTGATTTATGTCACCATAAATACTTTATCCACATGCATGGTTAAACTGCAGCGGACATATCATTCACAGCACAGAGCAGAGTTCCGGAATGAAGAACCAGCAGGCCACCTGTCTTTATTGAAAATGACACATTGGAATGTATCTGCAGTTGCTTGCCTTGGGAGACTGGGCCAAATTGTTTTCCCAGATATCCTCTGTGAGGGATAGAATGTTTGCACGTGTATATGGTTACATCACTCAGGGACTGATAGAACACTTCACTATTGTTAGGAACCTGTCTCATCATTCAAGGAATGTGTCTGGCTGGCCATGTGGGACACCCCTTCAGGTTATGGCAG-----------AATGAAACAACAGGGTCACAAAAGACAGTGCCATTCACTTCACTTCGGGCCCTCCCTGTTTTCCTCGGAATTTTTCATCCAAGAAGTCAATGGCCACAATTGTTAGCAGATAAGCTTTTGTGAGTGAA-GAGGCCATGACCTGTAGAGTGCTAATAATCCACCGTATGTCATCCAGATCCAAATGCC---------------GCAGTGCCCC----TGAAAGGCTTAGTCATTACTGTATTGATGGGCGGGACATGAAAGC----CATCAGAATTGATTTGGGGGAAGAGCATATACTTCTATAGTATGGAATTATTAAATTTTAGGGAACAGGTTGAAAGCAATCACAACCTCTCCCTGATGTTTATCTAAACAAAAATTCTTCAAATGGAAAAAGTTACAATAAAAATTAAAATTGACATATATAGAGGTTTTTGTC--TGTTTTGAATGATGGTTGCTAAATTTTGTTGTCTAGTATTTGAGGTAC-ATATTTCTC-----------CATTGGTTCCCTACAACACTAGACTGTTTGGTATCATCATACAACTGCAAAACGTTAAGAAGCACATCTGCCCTCTACCTGCCAGATGTCAGCAGAAAACCTTGCAAGTTCCAGGTACTTCGGACTAG--------------AAGATTAAAGGTCACCCAGGAGTGACAGCCCATAGTCATGT-TTACAGAATTATGCAAACGTGTATCATCATTAATGTATTTGCTAAATTTGCTGAGTCATAACAATGACAATAGGCATTTCAGT-----ATGTAAA----------AATTTATGAACTTTTTCG-------AGGTGCATAAGTCTGATCCATTTTCCAATTACATTTAATAATTTGTATGATTTAGAAACTTTTTCCCTCCCAAGAAGTACACT------TGTATTTCTCCAGGAACACAGGCATCATAGCAGTT-TTCAACACAGTAATTGAAGATCAAGTAGGTCCTGCCTGATCACGCAGGGTAGTCATGCAGCCAGTTTATGATTTGGCCTCTGAGGCTCACCTAGCCACACTGGAGGATTTTAGAGATACCATGTGTAACACTGTACTCCGTAAAGAATGCTAAAAATCATTCCTTTGATTAACATGACCATTGTGTACTAGCTATAACACACATGTATTTATCACTGTGATGAATTCATTTACATAT--AGACTTCTGTTTTCAGA----------------------GGATCCTGAAGATATTTACGGGCTCCAGCTGTGGA-CTCCCACTGTGTTGGGAGTCTCCCCATTGTTTCCTCATGGCATTCTGCATGCTGGCAAGGGTCCTTCAGTTT-TCATCTTTCTGATAGCCTCACTCCCGCCCACCCTATCTTGTGGGCTTTTCTTATCCAGCAAGAAGGAAGACAAAAATGTGTGAAGTCTTGCCAGGCTGACCTTTTATTTATCTACCATTGACAGGATCACACAGACTGCTTTTGGTTTTTAGGGCTTTCCTGCTAATTCCCTTGAGGAAAAAAAATATTGCAGAGATAAAAATAACAAGCGTGGGAAAGCAAGGAAGGTTATAGACACTTAGAAAGTCCTTCCAGGCTTGTTCCCCTGCCAGTGGCTTTTGACTCCCTTCTGCAGATGGGCAACAGATACTTCCCTTTG-ATTCTGCCCTGTGGTTTTGTTTCTAAGAAGGAGGCTAATCTCCATGCCTCTTCTCCTCTGACCTGTCTGTGGAATGGTAGTGAACAAACTTTTCCCATTGAGGTCTCCTGCATTGCTTCTGGAAAAGAGTGAGGAGGTGCAACTAAGTAGGTTTCCCTACATTAGCCAAGATACTGTTCACAAAGAGTGTA---------------------------TTCTCACTACATGTGACACTCAGCTGCCTAAAGTTGTGATGCACT----CTCAAATAATGGACAC-----------GACTTTAACTA---------------AATGTTTTGTATTGTACTTACAAAGTCTCCCG-------CTCTT---ACCTGCTTTCATAGGCACTTGTATCTGTCTTCTTAAT-TTCTCTTTTTAAAGAGGATTTTTTCTTACAGTGTGACATTTAATGAATATAAATGATCCCAGTTTGGCACAAGGTTAGACTCTTCTGTTCAGTAAACATGTCTTTATTAGCTAATAAACCCCAG-GGCTCTTAGCGACAGTAGGGACA---CTGTTGCCTGACC-------CCGCC------------AGTGTTTCATT------------GCAATAAGGGAAGAAACGGAGCTCATGCAGTGGTAAATGGTGACAGATGCTGCAGAGAGTGCAAGTGAGGTGCAAAAGGATGATGCAGGGCAGGTCTGCAGACTCATGCT----GATAGAGCTAAAGGGAGGGACCCAGAGAACTCACTCAGAAGAGTGATATTCCAGAAAAGACCTTAGAAAGCAACAAAGAACATTGCAGTGATACTCATAGAGGG-------GAGAGAAGGAACTCAAGCTAAAGGCGTCAGCCACACAGTCTCTCCTAGATAGAAGTGAAAGTCAGCACAAAAGCTCCAGGGTAGGGACCCGCCCGGAATACTGTGGGAAATGTAGGA-------GGGCAAGGTCATGATCAGAGCATGTGAGAAGGAAAGGGGAGAATAGCAAAGAAAAGACTTAGAGAAATTACAGCATAacacacacacacacacacacacacacacacacacac---acacacacacacacagagagagagagagagagagagagagagagagagagagagagaCTGTGG----TTTGTGTTCTTCCT---------CCTAAGC----TACTT------------------TGTGCTTTCTGGGACACTTTGACTAAAGTAGATACTCTGCAGTGACTTTAAAGGTATCTTTGAAGACATAAGTCCAGACATTTCTTTTT----ATTAAGCCACTCGTTATGGAAAAAGTGTTATCTGACACCCATCTTGTGAAGTTACAAAAATGCTCCAATATTAAGCTAATTCCTAAATTTGCTCTTGGCAATGACATCAGAAATCTAACAAAATTGAACCAAA
s HiC_scaffold_1 136210344 3543 + 233722169 AAAACAGGTATATCAGTGTTGCCACATGAAATGGCAATTGTGAAAACTTTATAATGGATCATGCAAGCTTGGAATAGGGAGAAAGGAGAGCTTATCTGTATTTTAATGCTAAAATTTAGTTCAGCTGCTAGTTAGAAAGTTTGTGATATCTATGCTAGTAGTAAAACCCACATTTTAATACTTGGCATTCTAGAATAAAGTAGGACCATATTGTAACAGCACAGTGTGTTCAGAGAATGAAGATGCTTGATGCAAAGCCGGCTGAAAAGCAGCTGATTTATGTCACCATAAATACCTTGTACACATGTACGGTTAAACTTCAGTATACATATCATTCACAGCACAGAGCAGAGTTCTGGTCTAAAGAATCAGTACACCACCTGTCTCTACGGAAAATGACATATTGGAATGTATCTACAGTTGTCTGAATGGGGAGAGTGGGCCAAATTGTTTTACCAGAAATCTTCTCCTAGGCGTGGAATGTTTGCATGTGTATATTGTTACAGCACACAGGGATTGATAAAACACTTCGCTATTGTTGAGGACCTGTCTCATCACTCAAAGAATGTGTCTGGCAGACCCTACGGGACATCTCATCACATTATGGAAGACTTATTCCGAAATGAAACAAATGAG-----GGAGACCTTGCTGTTCTTTTCACTTC-TTCTCTCCCTG-TTTCTTCGGTATTTTTCATCTAGGAAGTCAGTATACACACTCCTCTGCTGATAAGCTTGTGTGACAGAGCAAAGCCTTGACCTGCAGGCTGTTGATCACCTGAGATGTGTTATCCAGGTGCGAATACCAGGAGTTAGGACACAACTGTGCTCCACTGTGTGATTCAGAATCATTTGTGTGTCAGTGAGAGATAGATAAATACTTAACAGTGGAGTTTATTCAGAGGACTATAGTATATTTAAACATTGCACAGTTGTTAAACACTAGGTCAGAGATTGAAAGCAactacatttttttc-----------ctaaaggaaaatttCTCTG--------------AATAGGCATT----------TATACAAAGTCTTCCATCTTTGTTTCGatttatttttact-aattttattgcATAACACTCTATGGACAATGTTTCTCAATGGCAATAGTATTGACACTTTCAATCGCATACCTGTCTGTC------------CTGTGGAGTGTTTACCACTGCACCTCTCTTCTCCTCACTAGATGCCGGTAACACCCATGCCAGGCTCC----TCTCCAAAACAGTACCAAGTATTCTCAAGGTGAAA--TCACTTGGGCCTCAAATCTTCTATTCTTTTAGTACAATATTATGCAGATATGCGCAATGTTCAATAAACATGGTAA--CTGACAAGTGACCATGTTAACACTGGACACTgcagcaaaaaatgaaaacatcgtCATGACTTTCTgaacatttttggaaaaaaagatgca-aattttgatttattatgtAA-TACATTTGacattttaccctttttataAAGCTCT--CCTTCCAGCAAAGATATTTCAGTCTAGATTTCTATAGGCACATTCATTTAATAGCAGTTATTCAAAATGATCATAGAAGGTCATATGAGCCTTACCAGCTCAAATAGGTTAATCATCCATCCAGCCTGTGATTTGACCTCTGATACTCACCAAGGTATATTTAAGGTTTTTAGAGACACTTTTTGTAACATTTTGCTTTAAGAAAAATCTTGAACACCCCTCCTTTGATTAAAATATCCATTAATAAGCTATTATGCCACAAATGTACCTGCAActatt-tgaattaatttatatgtGAAGAATTTATCTTTTAGAGTATTGAATTTCTAAATGAGGGGGAGCCAAAATCATTTTATGGCCCACAGAGGCAGAGCCTGGGCTGTGCTgg----ctttctatttcttcctta-------CTGCAAGCTGGCCAGACTCAGCTGGTTTCCCCTCTCTTTTCTATTATCGATCACAACTGCCC-------------TCTCTTATCCACCAAGACGGAGGATAGAAGTTTGGGGAGTCCTTCCAGTTTTCCCCTTTATTTACCTGCTTTTGACAGAAGCACACAGGTCTCTTTTATCTCCAAGGGCTTTGCTGCTAATTCCTATGGG----AAAAATATTGAAGACCAAAGCATAACAAAGGTGGGAGAGAAATGAAGGTTATAGAAGCTTATAAAGTTGTTACGGTGCTATTTCCTTGGTGTTGGCTCTTGAATCTCTACCAAACACAGGAGCTGGAAGCTTctctttgaattttatcc--tgATTTTTCTTCTCAGAGTGAGATTAATCCAAATGCCCCTT---CACTGACCTGACTGTGAGTAGGTGATGTGTGGTTTTCTTGCCTTCAGCCTTCCTGGCTCACCATTGGAAAATCTGAGGCAGATTCAGATTTTTaggtttttct-ccttaaattggACTCTGTTCACCCAGGAATTACACCTGAAATTACACCTTTCAGACTCTTCTTCACAACATTT--TGTTTGACTGCCTAGAGTCTTGATTCTTTGCCATTCAAATAATGCATGTCATGTTTTTCAAACTTCAAAGAATGTTTTCATGTTCTAGTGTTTCATATTTCAATCATAATCCTTCTTGGTCGTAACTCTTTTAATCTTCCCTCATATGTAATTATACCTATTTTCTCAGTGTTTCCTTTTTTCAGAGA---CTATCTTGTAGTGTGACATCTAG-AAATGCAAATGATTCCATTTTGGGACAAGGTCAGATTCCTCTGTTTAGCAAATAAGCATTTATTAGCTAATGAGTGCCAGTTGCTCCTGTAGGCATTTGGGATATATCTGTGACCCAAACAAAAATACTGCCTTCAATGGAGGTGGTGTTCCGATAAGTGGAGACAGGCGGTAAACAAAGAAATACTGCACATAGTATGTCAAA-GGTGAGGAATGCCATAGAGTGTACaggcagaaaagaaatagaaattactGGTCA--CTTGAGTATTTTTGATTTTAAGTGAAGTTACAGGGAGAATTTCAGGGAAAT-----------GTGTTATTTGAGTAAAgccc--aaaaagcaaaagagaaaattatatagATAGCTGAATcaggaaaaactaaaagaaaaaactaaggtCAA---CATCATTCA---GGTTTCTATTTGGTAGAAAGAAGAGCCAGTGTACATGCGCCAAGGCGGGAAGAGGCCTCAAATATTCTGTGAAGAGCAAGGTTAATGTGGGTAGGGT-------AGAGTACACGAG-------GGAGAGAACATTGGAAGACAAACATTGAAA---------ATAACCCCCTCTC-CACACTGAT-----TACTAATCTACTTGACGTTCCAGTGCTTCGTGAATTATTTTGACAGTGTCAGGCACAGTTC-----AAAGTCTTTAACCACTTTATAGCTTACCCTGAGTATCACTCAGGCAGTgtatttgttaaagaaaaaaacatatgtaaTTTTGGAGac-cttgtatttaaataattggactggtatATGGTTAAAGGTAATTTCAAAGACATCAGTctaagactttcttttttttcactgagCCTCTGATTATCAAAAGTGTTATCTCTTTCAACCATTCGAAGGACTTATAAAGCTACCCAACTACTTAttgaaattttggatttgttCTTGGGAATTATaccaaaaaccaaatgaaaccaaaccaaa

a score=25614
s chr3           149582761 1434 + 160039680 ATAGAAACAGTTTTCAGAAATTATAAAATGTACCATGAATGGTATACAGAACATACACA----------------CTA-ACACACAGAGGCACCCTAGATCATGCACTCAACAAACATTTTACAAAGATAATCCCTTTCCCTAATTCAGCTCACTATTTGAGGATTTTCCAAAAAAAAAAAAATCAGTTATGTTATTATGTCTTTTCTATTGTACAGAAAGAATTTGGGGTTGGATTGAGGCGTTTTATAAATCATGACACATTAACAGATTATTCTTCCCT----TAAAAGAGTTTGTTT--TTTAACTAGATGTAAAGGTTCccctcgctcccccttccctccctccctccctatatccattctccttccctctctccctcTATCTATCGCTCGTGATTTGTTTGACTTATGTGTTTTCCAAAGCACA-TTTAATAAAACACCACA-GACTGAGAGCAAATTAGCTGTCTCAGAGAAGATTTAATTTCA--------GGATTTTTTTCTTTCAAATATTTTTGAAGGAAACTTTA---CAGTGGTGTCCAAGGATGCTTCTTACGGGTGCCGTTGTCAGAGAAGCCTGCCATTTAGTAGGAACTAGGACATTTTGTAGTATATGATCCAAAGGAGA-AAGCTAGATTATCCTGATCTCTCTCACTGGGTTACGCATGATCAAGTTAAACTGCAGAAGGAACCCAAAATTGCCATCAAGGGAGATGGGCAATAAGCaaaaaaaaaaaaaaaaaaaaaaaaaaaGAGAGAATACATTTCCACCAAGAAAAAAAAAAAGAAACAATTTCTCTCTCTCTTTTTTTTCTTTTCTTTGTAAATAAGGCTCATGCCAAAATGGAGAGAGACTTGGAGTAAAATGTG----AGCACACCGAGTGCTAGGA-------ATCAACAT--------TTGGACATTTTGTACATGTCAGTAGACAAAGAGAATGACACCTATAT----CCTTTCAAACATGACTCCAATGTGGTATG--------TGTATTTTTACTTCTTTTGGTTTTGGATACAGTTTAGACACTGGAG-AGATTGTAGTTAAACACATCCTGTGTAGATCATGACATGTTTTAAACCCATTTTCTTCTGTTTTCCAA-GCGTATAGA-CTACAATAATTCTGTTTGTAATCCTGGGGGACTTTGGTCCAGGGTA----CAATACTTCTATGGTGT--TTAAACACTGGTTGCTATCCTTCTTGTGTA----TTTGTCTAATTCAGCCAAAAAT-GTGACATGTGTAGACAGCCATAAATTCTGGAAACTCAACTTGAGGATGCCACCACCAGCAGAGGTCATAAGAAAGTATCACTCTCAAGAAGGAGCACCCATCCAAGGAGCACCCATCCAAGGAGCAACCATTGAAGGTGCACCCATCCTGAGCTTCCCATGGCCATCAGCAGGAACTCTCAGGCAGCATCTTCCA------CTCTGGTTGCATGAGTTTTTGGTGAAATGTGGATCTTAAAGCAGGTTCAGCAGA
s HiC_scaffold_1 136217023 1360 + 233722169 AtagaaataattcctaaaaataataaaatgctcaTTCAATAGGAGATAGAACACACACGAAGGATACAAGGCCAGCTACATATACATGAACATCCTA---TTGGTAAACAccaaaaatatcacaaataaaaTCCCC----------AAAaccaatatgaaaatattttctagagaaaaaa------------ttaatatatc----cTAATCAGTAGAAAGAAGTTCAGGACAAATTGAGTTATTTCATAAAGGACAACATATTAAAAG--TATTATACACTGAGTTAAAAAAGTCTCTTTATCttcaccaaaaataaaag-----------------------caatagtctctgtatgcatg-----------------tgtatgcatAATGTGTGATTTAGATGATTTATGAGTTATACAAAGCACAATTTAATAACATGTCACAAGCCTGAGAACTAATTACATTTTGCACTGAACATTTAGTCTCCCAGTTCATGTGTTTTTCACTTGCAAATATTCA-GAAGGAAGTTTAAAGCCGAAGACATCAAAAGATGCTCCTTGTGTGTTCAATTGTCAGAGAAGCCTGCAATTTAGTAGGATCTAGaacattttgcagtaaatgaTCCAAACGAAAGAAACCAGATTAGTCTG--CTCTCCCACTGTGCTAAGTATGATCAAATTAAGCTGCAAAATTCACCAAAAATAGCAAGCAA-GAAGATGGGCAACAGGCTGAAAtgtaagaaaagaacaaaga-------------attt---ctaggaaaataaaagtga-----------------ccttttattttgtctttgtaagTAA-ATTCCTATCACACGAAAGACAGCTTTTGAGTAGAATATAATTCAGAACACAGCACTGTAAAACCCCTGCATCAGCATTGTATCAATTGTACATTTTGcctat----aaacaaaaagaaaatgaatctttttttttcctttgctaacACTATTCCAAta-ggtaggattttttttttttttttacttctttttacttTGGAAGCAATTCCTATGCTGAAGAAAACAGTGATTTAAAAACCCTCACTTGGCTCATAATTTGgtttaatactattttcttttaccttctaATGTTCATAGATTTGCAATGATTCTATTTCCAGTCCCCTAGAACTTTGGTTCATGATGCATTCATTACTCTTGTTATATAGTCACGCTCAAGTTACCCTTCAGTTTTTACAAAGCTTTGTCTGAttcaataaaaaacaatgaaatgtatTGATACTTGTGATTGTTGAGTGTTCAGCCAGAGGATTCGA--AACTACACAGTTC-TAAGACAGGAACCCTCTTAGAAAGGA--------------------------------AACT-------GTGT-----TCTTGGCTTTCTCAGGGTCATTGGTGCAAATTCTCAGG-ACTAATTCCTAAGAGTTCTTTGGCTGATGGAACTCTTGGGGAAATGTGGATGTTGGAGaaagcacaaaaaa

a score=131151
s chr3           149585180 4674 + 160039680 [encoded data, 5079 characters]
s HiC_scaffold_1 136218875 4871 + 233722169 [encoded data, 5079 characters]

a score=60355
s chr3           149596821 5514 + 160039680 [encoded data, 5920 characters]
s HiC_scaffold_1 136226848 5131 + 233722169 [encoded data, 5920 characters]

a score=40357
s chr3           149603062 1353 + 160039680 tctttctttttcA----GTAAGCAAT--ACTTCAAAAGTCTCAGAAATCACTTCATCCTGAGACTAAATTTATATGGTGGACAAAAAGAAAGATCTTGAAACAGCAACCAT-GCAGTCTCCAGTGGGCTATGG--AATTTTCTAGCTTGTGTCCTGGTGGAGTGGTAAGTTTGTGTGCTTTGTAGGAGAATTTTAATTGTGAGAAAAAACCCAAACAAACAAAAAACAAGAAATAGATACTTTGTGTAGAAAGTAGAAC-AGGAGAAATCACTATTAATAGATGCCTGACTGACCGACAGAGGCTAGGATGTGATATGTGGAAAAGAAAAGAACAGGAAGCACGTTGGTGATGGCGGAGAACGTTTTCAGTGCCCCCCGTTTCTACAGCACTGGAAGTGTTCT----GCTTATCCTACTGAAGGG--TTGCGTGCCTTTCTTCCTA-TGACCAACACATG-GCATTGAAGTTAAGAGATCTCAGGCAGCAGAAACTCATTGTCACATGCA-ATCAGATGATTCAGAACACAGAGAAATTACTTGGTGAGAATACTTCCACTTATTTTTGTGAGTTATCTTTAAATGAGGAGGACA-AGGTACAGTGAAA---------GAACCTCTATACAGTCAATAATTCATGGCTCTTACAAAAATCTCCTT-GCCCACAGTACTTTTGTGTGTTTCCAGTATGACCTCCCTGGAAGATCT-------ACAGC-----TCCCCAGCTCAGAGGAATACCCCATCAAAGTTGCTCGAAAGAGA---TTCTATG--GGCCAGGTTATACTTCTGTAGTCTCTAGCCATTTCGGGAGTTGGTGCAGTCAATGGAATTGTCCTTAGGATGACAGCCAAGGAGCTTGCCTAGGCCAAGATAAATGCATTAGGA-GCAGAAGAGAAATGCAGCTCAGTGGGCAGTGAAAATCAAAGCTGGGAAATGGGCCCCTCTCAGCCTCGCTGCCTTGTGCTGTCCATTAAGCCCTATTTGCTGGTTCATGGTTGCTCACTTCATTTGCTCTCTAATCCCTTTTTTTGCCAGCTTGGCGTATCTCCAGGTTAGTGCAATCCTGTTAATTGCTGTTGCCTGCTACTGACTGACTGTCCCAC-GGCCTTATCACCTCATTACAGGGATTGGACATGAAATTCTACACGTGAAACGCAGTGTGAGGCTGGGTTTATTTAGGATTGGGACTTAAATCAGACATGATCTCACAGCTTCTTGGAAATGGAGATTTTTTTCCATGTCCTCATGCCTCCAAAGAAGCC--GATTGACTGTACCCACCTGCTTGACTTTCATGCTGTGTATCTGCTGCTGCAGTG-----ACTGTATTGCTGTGGGCCAGAAATGTGCAGGAGTCAAGTCTGCTATGGTGGAAAGAGGTCTTAGGAAT
s HiC_scaffold_1 136232629 1308 + 233722169 tttcttttcttcaacaTGTAAGTCATGAAATTTCAGTGTCTCAGAAGACACTTCACACTGAGACAAGACACAAATGGTAGGCTGGCGAGAAATTATGTGGCCCACAGTTGTTGCATAATCCAGTGGGAAAACGCCAGTTTTCTTAATTGTCTTCTGATGAA-TGGGCATTTTATTTGCTTCTGAAGtacatttctcttttcaaaaggaaa------agagaaatagtgaaaaataaata--------ggaaaaaagagcTAGGAGA------------------CCTGAGCGAT-----------------------------GAGGAAAGAACAGAGGA---GATGGTAAGCATGGAAATACTCTTTGTTAGCC------TGGATAGCACTTGTC-TGTTTTTAGAGTTTAAATAGCTGAatggctttttatgtttttgtaattAGTGAAGAACACATGAGCATACAAGTTTAATTCTTCTGAATAGAAGCAGTTATTTGGCCCATCCACAGGGGAGGATTCAGAACCAATGGAATATGTAAGGTAagaatattttc-ctttgctttgtgaattatttaaaaatgaggaacACACATGTTGCATGAAACTGGAAAATGGACTTC----CAGTC------------CTCTTGTGAAGGTCTCCACAGCCCATA-CAATTTTATGTGCATAACGTAAGATTTCATTGGAATTTCTTTTCCTTACTGCCTTACTGCCCAAGTTATCAGTATATCACATCAA-GATGCCTGAAACAGGGCTTTCTGTGTAGGTCGAATTATACTTCGGTTCACTCTAGGTGTTCATGGAGTGGATGTGGTTGATGGGATTGTCCTCAGGACGACAGGCAGAGAACTTGCCTAGGCCAAGATAAATGCATTAGGAAGCAAAAGAGGAATGCAGCTCAATGGGCAGTGAAAATCAATGTGAGCAAATTGGCCCATTTTTGCCTTGCTGACTTGTACTGTCCATTAAGCCCTATTTGCTGGTTCATGGTTGTTCACTTCATTTACTTTCTAAT-CCTTTTTTTGCCAGCCTGGCACATCTCCAGGTTAGTGCAATCCTGTTAATTGCCATCGCCTGCTACTGACTAACTGTGACACAGGTCTTATCATCTCATTACAGGGATTGGACATGAAATTCTACACATGAAAGCCAGCGTGAGGCCTGATTTGTTTAGGATTGGGACTTAAATCAGACATGATCTCACAGCTTCTTGGAAACAGAGA---TTTTCCATGTCCTCATACCTCCAAAGAAGCTGGGATTTACTTTA---GCTCGTTTGACTTTCATGCTATCT---CATTGCCATAGTGATCACACTGCACCGCTTCACAGGAGAAAGTGGGAAGAGTGAAATACTGCGTGACAAGAGGaagttttggaagt

a score=45040
s chr3           149607074 2649 + 160039680 CTTTTAAATGCTGTA-TTTACAAGCAAGATGCTTACAATTATAATCCTTATAAGCAAGATGGTCCTTAGAGGCATGTGTGAGAAATTAATTATGAAAAGCAGATAGGGAGAGAGAGAGAGACCCTCAGGGGAAACATTATCTGTGGGATATTTTAGATTTGTAACACG--TTAAAATGAAAATAATGTTGGTGGGTTGATTCCAGAATAACTTTCAAAATTAATGGCTCCTTAAAAAAATGTAGCTAGAGAGATTTATTGAAGAATACTTATTGTTTTTTAAAATTCTGTTTTGTGTGATTTAGACCCAGAGAATATTAGAGAGACAGAAAGGAAGGGAACCCAACAAATGTGATATTATAAAACACTTGCTGTGGGGTTGCAGTAGATGGAAATCACTCTAAGAACTGGCTTTATTTTTTTCCAGTAAAGCCAAGAGTTTTAAGTGGTGTGTCTGTACGGCCCGATTGAGTATTTT----ACAGACCGAATTGTTTCATGTAACTTCGGTGTCAAGATCAGAAT--GAATAGTTTACCAAAGGAAATGACACCTAAGCTTAAGGGATGACAAGCTTTCTGCACATGGGAAGTTTGGAAAATACCAGCCCTCCTATAGTGCCAATCAAGAAAATCCTCA--------AACCACAAGAAAATGGAGGGGAAGGGGAT---GACAAATGAAGTTGTACTTTGAAAAGTTTCTTTCTCCTCCTTCCAACTTTAAGGTTAACAAAATGAAAGATTCTAAGCACACGACATCATAATTTTT-ATAAATGTGGTTATGAATACATTTACAGTTTTAATTACAATATACATAACACATAAACAGGTTGCCAAATAGATTCTTGAGTTCAGTAAATCCAAGAATTAAAATAAAGCTCTAAGCTGCT-CATAATAATTAAGTTAGTTGAATTCAGAT-TTTTTTGCATAGCAG-AATCAAGTAAGGCACCCTTAGATTTACTGAAATTAACGTTTCAACAATTATTCATTGTATTTACTAAAC-------TCAAGACTGTCTATA------------------AGAAAGGAGCCATTTATGTAATTCAGTGGGCACTAGCAAGTTGGGATTAATGAACTGTGGTATTTTGTGACATTTCATTAATAAGTTTTTCCCCACTCTGTGCTTACCTAG-TTTTGTACACTTAGC-AATTTCTGCCAAGTTATGATCAACTAGTGACTAATTTCTCCTATCATC-CATTACTTAAGGAATGC-AAATGCCTTCATGTCATAACCAGCAATGGCCTTTGGGTGTCTTTTCAAACAGTGTTTTTATGCCATACATTATTGGATGGA-AAGCAGTACAAAAGTACTCTG------------------------------GGTGAGATGTTCTGCAC------AGTAGTGAAGCAGTATTT-------------------------------------------------------GAATAAACACTGAA---AACCAGGGTcatacacacacatacacgcacacagaca--------------------cacagacatacagacacacaga------------------cacaaacacGTGAAAGCACGca------------aacaaacaaa-----caaacaaa-----------AATGGA-----------------------ATTAAGG---------------------GAAATTTCCCA------CCATAC--------------------------------TGAAGA----------------------------CCACCATACC----------------------------CAAGACCTTCCTTGAATGTTGTGGTGGGAAAAAAAAGATACTTTAT---TTTGTTAGCATAACTAATAGTCTGGATTGAAGTCTTTGCTGGTCACAGTTGGAAGAATGTGCACC--AAGTTCTATTACAA--ATGGTCAAGAGATCCTTAGAATTTCATGAA---CTGTATCTGAGACTGTCTATAGATGCTGTGGTCTAGCGTGCTTCACATCTGCTGGCT----GC-CAGACT-----GACTCTGCT-----------CTCTGTAACACTGCTTGGT------------CAAATCATTACAGTTGTATGGAA-----GAAACTTGTATGGAAGAAACACTTTCATTATTTTCTTCCTT--TTAATTTTTT---TATGAAAATAAATATGACAAGA------GTTGAGAAAACGGTAATATATAAGAATAATCTGACACTTGTTATTTTAGGAGATTTTGATGAAATGTGAAAGCTTTGCCTCAATCCCACAGCAGAGCT----CAGAGATAGTTAGGTGAAGAGAGTACACCTGCCCAGATACCT--AGAGGTGGCTGTGATCTAACTGAGTACACCTGCCCAGACCCAACAGATGCCTGAGAACTGGA--CCAGGTGATGGAGCTGGACTCTGTTCTTGCTGCTACATTCTAGCTTCTATCTGACTATGACTCAGTCTCT------------------GTGTTTGATGGACATGGCTTG-TTTTAAATGTCTGTGAAT-----GACACCTTG-------------------------------------------TCCTAGGTGGTCCTATCTGGATATAACTTTAT--------------------TTCATTACAGATATGAGCAAAATTAAAGCTCAGAGCTTGGGATGGATAAAAATCACAAAAGCAACATTCTTAG-ATGAACCGTTTCC---------CCAC----------GAGCAAGTTCCCAAGAATCTTTTGTGAAGTGGAATCTTTTGTAATTTGCAAGCTTTGAAAGCAAATTCCAGTTGAATGCCGGCGAATTACACAAATGAAGCAAGTGGTACTGT-ACAGACTGACTTTCTTGGAGGGCAATGCACAATTGTTAGGCTGTGGAAAATTATCTTTTCATTGTGATTCTAAAATTTTGGGTTTGGGGAATCTGTGAAATCATAGA----AATCATTACAGGCATTTCCCAGACCTGGTATCTATAAAGTTAAAAACCATGAATTTGAATCTAGTC----CTGTGCATTTTAACTCTTCTATATTACTGCTTGGCTGGAAGATTTAAAGCTACTCGAAACAGAACTCAGATTTTTCTATCCTTGT
s HiC_scaffold_1 136234996 3015 + 233722169 CTCTTATATATAGTAATTTGTAAGTAAGATGCTTACAATTATAATCCTTATAAGCAAGATAGTCCCTAGAGATATATGTGAGAGAATAATTATGAAAAGTAGATAC--------AGAGAGATCCTTATGGGAAATGTTATTCATGACAGACTT-ACTTTTctaatgcaatttaaaataaaaataatactca-gagtagatttcaaaataagttaCAAG-TCAGTGTTATATTTTAGTCTTATAGCTAAAGA------------AATATTGATTGATTATCTGG-CTCCACATCAGATGAGTTAAACATACAGAATATTagagaaatagaaagcaa---------------------------------------------------------aatttcTACAAG--------TTATTTTTCTA-AGCAAAACCAAG-----CAAACGGCAT--CCATATGATCAGAT-GAGTATTTTTTTAACAAGCacacttctttgttttttttttaattttaatctcaGAACccttataattaaataaaaagcagaacat-------------------agtttttacccaatttgcaGTTTGAGCAGTAAAAGTACTCAGATATTTCCAATCAAAACAATCCTTACTTAAATTatatacagaaatgaaaatgaaaaaaagatatagaCAAATGA-----TACTCC--AAAGTTTTTTACTCTTC-TTGAAACTTTAAGGTTAACAAAATCAAAGATTCTAAACACACgccattataattttttataaatgtgcttaTGAATACATTTACAGCTTTAATTACAACATACATAACACATAAACAGGTTGCCAAATAGATTCTTGAGTTCAGT-AATCCAAGAATTAAAATAAAGCTTAAAGCTGCTCCATAATAATAAATTCAGTTGAATTTAGATATTATGCACATTGTAATATTTAAGTAAAGATCTTTGAGA--tattaaaactacttttaaaataagtattaactGCATTTAGTGAATTTAATGATTaagatttttgatatttttaaatatgcatgTGATTCAGAAGGCATGGTTG--ATTCAGAAGGCATTAGGAAGCTAGGACTAATGAACTGTGATATTTTGTGACATTTCATTAATAAGTTTTTCT---CTCTATTCTTAAATAGTTTTTGTATACTTAGCTATTTTCTGCCAAGTTATGATCAACTAGTGACtaatttc-cttgtaatctctttaCTGGAGAAATGTGAAATGTCTTTATGTCATAACTAGAAACAGTCTTTTGGTAATGTTTTATGCAATGCTCTCAGGCCCTACATTACTGGATGGAGAAGCAGGACAA---TGCCTTGTCATATATGAGAAACCCCAATCATAAAGAAAGTGAGAAATAACAGATAATAGAAATAGGGAGGCAGATCTTAGTCAAATGGGAAGGGCATCAAGGgatggggaggaaggaagagtgaGAGGGGAggagatgaaaaatgaaatgaagaagtgTGATGTACAGTCACTAACTCACTAGGACGGCAGCGTTATGTCTTGCACCCATggactaaaataaatttaaaatatcctgcaTCAATCATTGCAAACATGTGTGAGACGGTATTTGGTGGATGGCACAAAAAAACTGTTCAAACACAGTCTTCAGCTGAATGGATTATATCCAGCTTTGTTTAATTCATTTATGCtgaatgttgtatttttttttgaatttttgcatgaaattcataCGTGTTACCCAGAAAAATTCAAGAAtaagaatttgaagagaacaaaGTTGATTATGTTCCACTTTCTGTACCATTCCAAATATGGAACCCGAGGCATAAAAGTATTAAGACCTTCCTT-AACAGTGTGTGGCTAAGAAATTTCTACTTTAGAAACTTCTT----TAAGTCATAATTTAGATCTCAGGTT----TGGTCAAGATTTGAAGAATCTATATCTACAATTGACTTGGAACCATAGCCATGA---CTTTAAAATTCCATGAAATTCTATCTCTATCACAGTCTGTTGATGGCAAAATTT--CTTATTGCACAAAGGCAGAATCAAGGCACAGATTTTGTGGACTCTTCCTTGCAACTTGGTTTTGTACCAATGCTTTGTGCAATGTGAACACACATAGTTGCTGTTAGATGAAATCATCATAGCttccttgaaaaatatttttttgcaatttttattcatcactaaatttttaaaaatgagaattaataTGATAAAATTTGTTGCTGAGAA---------GTGCAAGGCAAATGTGGAAACTGGAAATGAAG--GTTCCTGTTGATGCCTTGAAGTTCTACTATTATACCACACCAAAGCTGAGACAGAGAACACGAGCTGGAGATGGTACATGGGTGCACTTGACTGCAAAGCTGAAATAAACCAGGTGGAAAACACCTGTTCAGACCCTGCAGGTTATTTAGATCTAAATCTCTGATGAGGAGGCAGGACCCAGACTTGGCTGATCACTGATAATGCTTTATtaactgtgaaatattttttaaaaaagtttttatagaAGAGTCAAAtggataaatattatttttaaatgtctgtagATGGTGAGAGAATTTGATTAGGgaaaaaaggggaggaaaaacaatatttgcctAGTACCTGCTATGTGTCCTCTTCTGGTTAAAACTTTATGTGGCTAAGAATGCACACTCTCCGTTGTAATAATGAG-AGAACTGAAGCTcagggattgagataaaataaaacaaccatgGTAAGTTGCTTATCATAATTCTTTTGCTATTTGTAACCACTGAAAAATTTGAACAGATTCATAAGCCTCTTTTGTGAAGTGGAATCTGTTGTAACTTGCAAATTCTTTTAAGCATTTCTTGCTAAATGCCAGTGATTTACACATATAAAGTGTGTATTGCCATCAAGGATTGACTTTATT-GAGGGCAGTG-GTGATTTTAAGA--GCAAGAGATTAGCTTTGTTACATAATCAAATCACTTTGGGTTT-GGAAAGCTGTGAGGTCATGTATCAGAAAAATTATCTGACTTTCCTATTCTTGATATCAGCAAAGGT-AGaattaaaaatttgaatgtaCTCCTATCTGTGCCTTTATATTATTCTGTGTTACTATTAAATTGGAAGATTGCAAACTACTTAAACCTGagaccatgttttttttttgttgt

a score=57483
s chr3           149613121 2365 + 160039680 ATATCATCCCAATGGCACTGACAGGGACTGAGACCTCAAATAAAGCCATTGTGCAGGTTTAGAGCAGAAATCTATGATTCATAGTTAGCAGCTCTCTCTATACATCCCTACTGTGTTTCTTCTCAGTCTTTCCCTTTggagaagagaggtgcagggacatttcactgggtagaggggttgcagggag-------------cttgtgtttgagttcaggcttgtgact---aaaagctgtggccctgaattgtttccttgcactctctaagtttcaagtgtctgacctggaacaagcacatgctgctcgtgctgacttcataagttgttcagatgatcaaacagattatttcaggcactgtatttatcattgtgtctcacaccattaagtgcttaatacatggtaactgctataattattatttattattattataatCTGTACTTTAATTCCTATTGAGTATGAATAGGGACATGTCCTCTGGGGAAACCACCTA-----CTTTTTGCATTTAATTCAGCTACAAACATAGATTACTATAGCCTAGcacatttacacagaacacacatgtgcagatatattcatgcacaccacacacatgtgtgcacacaggcggactcacatacacatgtgtacacacaatcattgaaacacacacaGTGTTTCACTAGTTGAAAAATAGG----ACTTTTGCAGCAAGATAGAAG-------CTGATTACATCACTTCCTGA-----GATACGTGGCAAAGGTCTAATACAtctgacatacagcttcctcac--ttataat-aagaaaataatacttttattatgaggtcattatgcaaactggaagtagtaacttttatttaaagggtttagtacTACCATTTTAAAAGTTAAA--------CATATTTATATTTGTTCATTCTTAACATTG-ACTAGAAAAATAGA----CTGTATGATATCTGTTATTCTTGAATTCTCTGTGCCCTTCTGTCT-------TCTCTTTATTATTATTT---------TGTCTC----AAGTGACTCTGATCCTCCT-GTCTTTATTTTCTCTCCTGTGTAAAGCATCCCGGTAGATCTAAGTGTGAGGATGCACGACAG--CCGGCCTGTCAGAGTGGAGCCAAACACAAGCAG-GGCAGCACTGTTGTGGCATTTTCAACCTAGCGTTGGGAATGAGAGCAGCTCTGGGTGAGGGATGAGAATTCAC-ATTAGTGGGGATGCTGCCACAGGACTCTCGTGGGGTCTGTGGAGTGGGATACATCA----CTACATTTCTCTTTCATTCTCTTAAATCCTAGACCAGATTTCAGTTTGTCCTTTGATAATCTCCCTTGCCTCATAGAGCAAGTTTTATACCCAGTGAGTCTATACTCAGTGAGCCTAGGTCACCCTGTACAGTTCTTCTTTCATCGTTTGGATACT----TACTAGATTTTTCACTTTAAAATAAAATGGTTAATAATTTCTCTAGTGTATTTGAGATTTTTTTCAAAAGCatttttttcaatctagtttaatctgtgtttaatttaatatattaaatcttaatttaatattttataatttgagctaatatatttaaggtgtattacatcttaattttatatattcaatcaaagtttaatAAAGTTTCCCTTTAACATCTTGATTAAAAGGACTACTGCACAGTACTTATGTCTTTCAATTAAACTCCAACCACTGCTGTCTCAGTGGGCTTCAGCATTCCATCAAGGACTTGGAGCCTGAAGTCCAAAAAGAAAAAAAAAAAAAGTGCCAGCAGAAATATCAAGAAATTTTGTTACCACAATCTTTTTCAATCTTTTTTGATT-ATAGTAATTGTTCTGTATTTGGTAGCATAAAACTAGCTGTTGTAAAAGGGAATTCTTTAAACTCTGGTGATTT-ATGTCAGTAGAAATTAGTTACAAAATCAAGCGACTAACTCTTCCTGATCCAAGTGTGGTTCTAGTGCTGAAGGTGACTCAGGTACCCAATATTCTGCCAA---AATGAGCCACCATCTTCAACATCTATAGCAAAAGCATCCAGAGAGGTGACAGGATATTG------------GAGGGCACGTGGGTGGGGGC-CAGTGAGCAGAACTAACAGTGGCATCGATTGGGTTTATTTATGTTCAGCAGGCTAGAACTCAGCTGTTGCAACAGAACTTTTACAACATGACTGAACTCACTAACAAGGGATAATAGGATCTCACAGTCTCACTGTGTG-AAAGCCCAGACAGAAAACA-ATTTGTTCATATTTATAATGTCATCATTTCTATCTCAATGTATATAAACAATTTACTACATATATAACTTCCACAATTCTAGAATCTGTCATGAAACTTA--AATTGAGGAAATAAAAACAGAAATGTCTTGCTAAGAAATGT-CTACTGAGAAAGAAAGCCTACAGAGCACATGAGAAGTATACTaattattttt
s HiC_scaffold_1 136240697 2261 + 233722169 ATGTCAGCCTATTACTGTTTACTGTTTCTAATACTTGGGAAGAAGCCACTGAGCAGGTTCAGTGTAGAAATCACT-----ATACTTTGCAACTCTTATTCGCCCttcttattttgtat------aaatattcCAATCATATTAAGGAAGTGTGA------TTTacaggggaggggaagag-agggagagagtaaCCAGCACTTGAGTTTGAATTCAGCCTTGTGATTTTAAAGTTCTGTGGCCTTGAACATGTTTCTTAAGCTCTCTAAG------GATTCTGACCTGTGATATGCAGGCACTGATAGTTCTTATTTCATAAATTGTTCAGATGGTGAAATAGATTATTTCAGGCAATATATTTATCATTGTGTCTCACATCATTAAGCGCTTAATAAATGGTAACtgatataattattatttattattattatcatatgggttttaattcctagGGTTTACGCATAGTGACTCGTCCTCTGGGCAAATGACCTGACTTTCTTTATGTTTATACTTCAGTCATGAATATAGAC---------------CATTCCTACA------------------------ATgca--------------gcgcacaca--------cacacacacacatacacacacacacatacacacacacacagtgttgtATTAATGCATGGACAGAGTATAGTTTTAGAATAAGATAAAGATTTGTTTCTGGGTGTGTCACTTTCTGGCCCTTTATCCCTAGCATATGTTTTACTC-TCTGATTTGTAATTTCTTTATCTTTACAATTAAAGAGCTTGCACTTTTCTTTTAAGGCTATT-TAGAAATTGGATGGACTGCTATTTATTTAAAAGGTTTTGTATCAGCACTTATCAAGTGGAATGTAATAGCAAAATCATATGTGTTTAACCTATGAGTTGTACAGGAAAAATGGAAGTCCCTTccagtatttctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctccccctgtcTTCTGTAAGACACACAGTTTTTTCTAGTGTTGATATTTTTCCCTTTG--AAGTTATTGGTTAGATC-AAGGGTCAATAT-CAATACAGAATCGGGTAGTCTCATGGGGGAAATGCACAAATAACAAAATCATTTTCCAGGGTTTTGGGGTTTGGTGTGATGAACAAAAACTACTAAAGACAAGAGCCACGTGCTGACTGTCAGGGTTGGCACTGCCACTGGAGTCTCACGGGATGTG----GTGAAACTCATTGAGATCtggattttgcttttattctctttaatttaGGTCCGAATTTTAGCTTCCTCTTTGACAGTCTCATCTACCTAGTGAAATAACT-------------GATCTGTACCCAGTGTGGCAAGGTTTCCCT---CagttctccccctttttttaaatcactctgATGCtagattttt-acttttaaataaaatagttaatagTTTCTCTGgtgtatttaagattttt----aaagcatttttt-caaTCTAGTTTAATCTGTgtttaatttaatatattaaatcttaatttaatattttataatttgagctaatatatttaaaatgcattacaTCTTAATTTTATATACTCAATCACAGTTTAATATAGTTTCCTTTTAACGTCTTGATTAAAAGGACTACTGCACAGTAGTTATGCCTTTCAATTAAACTCCAAGCACTGCTGTCTCAGTGGGCTTCAGCATTCCATCAAGGACTTGAAGCCTAAAGTCC-------AGGAAAGAGAAAGTACCAGTAGAAAAATGCAGAAACCTTCTTACTGATAT--------ATAGATTTTGGTTCCTAATGAT--CTCTATAATAGTAAGCATGATACTAGTTCTTATAatgagaaaaaactcaaattccaGTGGCTTAATGT--GTGGAAGTTA--TACATAATCTAA----TTAGTGTTTCCGATCCACGTGTGATTGCCTTTCAAGTGGTGA-TCGGGTA-CTAGTGTCCTTTCACCTTGGTGATCTGTTATCTTCAACACTTGTAACAAGACTATTAGGGAAGATGG-AGAGCATTGACAGTCATGCATACGGTCATATGGGAATGAGTGTAATGCACAGATCTGGAGATGCCACTTGGTATGTCTGCTT-TGCTCAG--------------------------------TCACAG-------GAACTC----ACAAAGGATGACTGGGACTGA-AATTTGATTTTGTGCAAaggacaaagaagaaacagatttgATCATATTTAAGATCTTATTGTTTGCATCCTA------------AAATTACTTCCAGAATCACTTC-------TTTGTATGTGTCATGAAAGTCATTCTCTGAAGAAGTTA----AGAAAGGCTCGACTGAAGAATTTGCCTTTGACAAAGAAAGTCAACAAAGTAGGTAAgatgtgttttcattattttt

a score=45143
s chr3           149623798 3675 + 160039680 [encoded data, 4188 characters]
s HiC_scaffold_1 136256489 3833 + 233722169 [encoded data, 4188 characters]

a score=26273
s chr3           149660562 1706 + 160039680 AAGTCAATGCATTCATTGGTGTGCTGCATGAAAATTCAGAGATTAATATTCACTATGTGTTTAGTTAGAAGATCAACACCTGATTTAAGACTAGGGATGCTCAGGCTGAAAG----GATGAAAACAATCTAA-TACTCAGACTGAATAAAATCTGCAAATTAGTGTTTGACATCTACACGGACT-----------GAGTGAACGCAGTGGAAAACACTGT---------------AACTTTGAAGCTCCTCCTGGAGAGTTGA---AGACACGGAGA-GACACTTCTACTTAACGTACCTCAGCCTGAGAAGCCAGTGAGCAG---------------TCCTTTCTTCCATGTTGAATGGCAGGGTTGACT-GTCTCCATGGTCACCTGTTGTAGTG--TGAGGATTTCCAATTC-----CTGGTGAGAATGGAAaaaacaaaacaaaacaaaacaaaacagagcaaTTCTCAACTGATAGGACAAAGTTG--GGCAACTTTGTGATTTTACTTATGGAATTAATAGCAGGGCAAGTCTTTGGAAAAGAGAGATAATTCCAGGAAATCTCCAACAACAGGGTAG------GAAGATACTGGCAG-TACTACCTATGCCAAGAAAGTGATGGAAGG--AGCAGGTAGCCTGGAGACCAGGTGCTTACATTTTTGAAAGATGT---GAAGATCAGAGATATGAGGCAATTTTACTTTTATTTTTT-----TAAATTGATGCTCTTTTATTCTATGCTAGAATGGAGAATATTTTAAAGA---TAAACCACAACACGTT----GCGAAATAATCTACGAGAATGAAATAAGACAAGCTAATA-------------AGCTT------GGAAAC--AGCCCATGGC-GTGGTGATAAAGACAAAGTTGCTATTAGCACCAACTCAGAGCAAAGGGTGGA-GACATTATAATAGAGAGAAGATTGAACTACGCAG---------------------CGGTTGGTTGGCTACATAAGACGAGAAGGAACAGGTGTGCTGTATCCTTGCTCTGGTTTTTATGAAGTCGGAGCAACTCCTGCAGACTTACGTGAAAAACTTTTGGAACTATTTTATAGAGATAGAGAGGCTTTAAGAAGGAGTGTGCCTCATTTAGAGTCCAGGATTGCAAAAACTTTTAAGACGGGAGGAAGAATTTACAGAGAGAACAGAACTAC-AGTAAAACAGCAGCAAATAGCTGTCCTCCACAGTTTACGAGTGAGAACAGGAGAAGCATGCTTCCATGCGTGGCAGATGA-TTCAAATTGCACATAAATTAGAACTGAAAACTAAAAAAAGTTTTGCTATACCTGGTGAGGTGCTTTCTTTTCTGTTTGTTTCCTTTTGTCTTGCTCTAAAAAATATATTATCAACAGGATAGCTTTCCAGGGATATTTTTAGAAATGTCAAAATTAGAAGAGAACATTGAATGTG-TATGTCAGCTTAATGTCACATTTTTATTACTAATGTTCAGGTAGAAAAACTCCTTATGCCAAACATGCTGATTGTCTTAGTCACACCAATTTGAAAGAAGAGAGCAAGGGAGCTTTAACTGCACAGGGAGATCTGGA------TTAAGAGGAGAGAAGAATTTCTTGCTGGAAAGGAATGTTAGGAATCAAAGTGAAACCCCA-GGGAC-----ATGAGGGGC--ACAGTGACCAGGGAGACAAGAAACAGCCAGAAGGGGACTGTGCTGGGATTTTATTGCTGAGCTTTTAAGCCACATGTGCCCA-------GGAATCTGGCTGAAATGCCAGTCAACACCAGTTTGCAGGGCAGATGAAG----TGGGCCT----GTAAAAGCCTTTTGGGACCATT
s HiC_scaffold_1 136278235 1787 + 233722169 aagtcAATACTTTCAGAGGAGTGCTATACGTTGATTAACATTTCGATACTGATTGTGTGCTTAGATGGAAGATCAAAGCTTGCATTAAGATGAAGAATGCAGAGATTGAAAGAAAGGACAAAAACAGTGTAAGTATCTGGAATAGATAGCAACTGAACTATGATATTGGGCTTCTAAGTATACTTAGAGGCCTCTAAGTTGACTTAGAGGTAAAGCATATTGAAGAAGGGAAAACAATTGTGAAGGTTTTCTTTTAAGGttgattaaagcatataaatgtcttttttaattaagaaagatTAACAGGAGAGGGAAATTGaaggaaaactgaaatatttttattttttctgtgttg-------gtaTTGATTTGACTAGATTTTTACCTGGTCTACTAGCTTGTGATTTCTAAGTTAAAAGCTGGTGCAAAATGGTCAAATGATAC----------------GAGAAATTCA--------AGGGCCAAATAGTTGTCAGTTTTGTCTTATTACTCACAAAA--AGCAATACTATGAGTCTCCAGAAAAGAAAGG--ATTCCAGGA---CTTTCAGGACAAGGGAGTGTATCAGAGGTGTGGGTAGCTAGTAA--ATGTCAGGAGGGGGAAGGCAGACTAATAGGTGGAATCAA-ATaggataattttgtttttgaaaaacgCTTAGGAGTTTGGAGCTACATGG-AAGCTTAGCTTtgtctattaaaaataaactagtactttttttgtctttactaCGAtggaatacattttaaagaagatataTCACAGCATATTTAGAACGATTTTAGCTGTAAGAATTAAATTAATGAAGTTAATACTGTTACCAAATAAGTTTAACATAGGAAACCTAGCTGAAGACCATAGAAATAAAAGTCAA-TTACTTTTAGCATCAACTCTAAATGAAGTGTGCATGACATAATATTAAACAGGA-------CTATGTAGACATGTGATTCTCAATGTACACTGACAACTAGTTACACAGTAAGAGAAAGAGCAGG-GTATTATCTGCATGAAGTG-TTTTTATTAAATAGGAAATGTGCCTGCa-acttaaatgtgta-tttttgaagCTGAC--ATAAATACGGacaaatttaaagaaggaaagtggCTCTTTGAGAATACAAGGATAAAAAGGATTTTGAGACAAGCAGAATAACTTACAGAAGCATAAAAACTACTGGCAAAACAGGGAGTGATTGTT-TTCTGTATATATTGAGAACAAAACGAGATAAAATAGGCC-CCATTATAGACAAAGGAACTTAAATTGCATGTAAGTTAAAGCTTCAAACTAAAAGAG--TTTGAAATGCTGGTTGAA-----tacctttttgttgttttgcttttgtttt-------aaaagctaTTATGTGAAGGACAGATT-CCAATTGTATTTTTAGCAATGACAAAATTATATAAGG---TTGAATTCACTGAATAAATTTGCTGTCATATCCTTCATATTAATGTTCAAGTACGAATATTTCTTACACCAAACAAGCTGATCATCTTATGCATATCAATTTT-AAGAAAAGAGCAAATGATTTTTAATTGCATCAAGAGAATTGGAATTGGCTTAACGAGAGGGAAGTA-TTCATGTTGCAGAGAAATGTGAAGAATCAAAATGAAATCCTATGGGACCAAAAATGCTGAGCTTCTAGAAGCCAGGGAGACAAGTGA-AGCTAGACTATGATTGGGCAGGAAATTCACAGCTGAGCTTGTGATGTAAGTGTGTACACAGAATCGGAATTTGGTTCAGACTCCAACCACTGCTGGAATGGGGGATAAATGAGAGATCGGGGCCTTGTCTTACAACCCATAGGGAACCATT

a score=64927
s chr3           149662903 2170 + 160039680 TGTTGTTTTTCAGTTTGAATTTAGCGATTGTAGACATTAATGCTGTAAGCATTAAAACTTTGCCCAAATTCCCAAACCAAACAAGCAGGTCAATCTTACTCAAGACACTGTGTTCCCAGTCATTACGCCAGGTACAGACAG-------TGTAATGTGCAATTGCAGCCGATTTTCCTAATTATGGTCTACAC-----TCATCTATTTGACT--GCTAATTTGTTTACTGCGTTATTGATCGATTTAGAAAATTGTGAATATTTGGGCAAACATGC---TTCTGATTAATTGCATATTGCATGTAGTTACTGATAGATATGTCTAATTTCTTTTTTATGTTATGCTAATTTCAGATTTT-AAAAGCCTTATTAAAATGTATCCTTTATTTCCTAGAGTTAAAAGATTAGTGGCTTCTCCCTTATGCATAAGGGAAGGGAATAATCCTTCGTTTGCTCCAGCTTTTGCCGAAATTCTGCTCAGGAGGAA-AACAAGTCTCAGTCATGTAAGAATTCACATTCAGCAGCACACTCGTGTCCTCCATTCGGCCCCCAGGAAAATATGATTATGTTA-ATTGCATTTCTTTGGATATATACAAATTAGACTCATTGTACAACGTCCAGGAATTACTGTCCTCGTGTTTCACAATAGCGAGAATTAATTGAAATCCTTTAGGGTATATGAGGCCGGAAGTGTGTCATGTTCATGGTATAGTAGAAAATAATTAGATCTGCAGTGAAGAGACACTCCCAATTAAAACTTTATGGGAAAATGATTCTGAAATTAGCTTTAAGGAAATGTAATGGGAACAGATCATAGGCAAAAGGCAACATTCCCTGGTTCTATTAGCAAGTGTGTTTATATCTT-TGTAGAGAATCTGT--TAACACCTTTAGACTGGTGATGCAATTTAAGTGGTATTTGAGAGAAAACTAAATCTACATCAG--GCAAAGAAACAAAAGCTATGAAAGACATATTTTTGTTGCAACAAGACACAATGTTTATAGTAGCAATCTTACACCTTTCCTAATCAAATTTGTCTTTAAACCTCACTAGAAAATATTACTAATGCA-GATAAAGGCAATAGAGGTTTAATGATAGATACTGACAAATACAGAAAAAGTTTCAGAGCTTAAATTTTAGAAAGTATTTTTCTAGTTTCTCATTTATTAGACTTTTTGACGAGTAGATTATTTTCTGAACTA-ATGAAAAGCACTGGACATGTTCTTTCCCTGCTAAGCTGCTAAGCTGCTTGATACGATTTAAAA-----ACAGTCTTAAGGATATTTG----------CATGATGAA--------------------------------CTAATTCTTATACTA--GCTTTTGCATAGAAATGCTAGTATAGCAA------CTCATAAACA-----AACAGACAAACAAAAACAAAGCAAACAATTGATTTCCAGCATTTAAATT---------TTATAGTTTCAgg-gttgattcttagctcactaataaagcacttgcttagcct---------------gtataagggcctg------------tgttctatccata----------acaac----------------caaaaaattaaaaata-aaaaaCCCTATTATAGTGTCAATGTATAAAGCAGACTGCAGTCATTGACTGGGCAGAAGCATTTT-------ACACTTGGGAGAGATTTTTCAAATTTTGTAAGTAAGAAATCTTATA-TTAAAGATAGAATGTAAGTTCATGCAAGTTAAATAATTGGCCGATTT-CATATCATATTACTTACTGTTCATCAGTAAGCAACACTGAGGCGTTCTTAGGCCAGCTCAGGTGCAGCAGTCAGTGATCCACTGGACCATTACTGGTACTGAGTTATCTTGAGGTGCGCCTGTGGCCTTGAGCCTCTTTCCATGGTTCCCGGCTTTTAGTTTACATGGAACTTCATTTGATTGTGAGGAAGGGT---GGCCTGCTCATGTATACAATTCAGTTGTTCCACCAGTGAGCTATTAGGTACAAAGGGAAGCGTTTTAAACAAATTGATTTTTCTGTGTGGAGCTTAAGTCCAAAAGGACTTCTTTGTGCAAAACCCAAGATCAATAGTTCTGTGCCAAACAAAATTGAATCATGCCATGACTTCAATTTTGTAATAATTTTAGTGCAAGATAAATAATAAGCTTGTTTCTGAATATTCCTTCATGGCTGACCTAATTTCAGTAACAGTCACTCTGTTCCTTTCATTACACCATTTACTACTGACATCACAGCCACACACAGACTTTAAGTGCAAGAGGCATATGTTATGAATG
s HiC_scaffold_1 136280256 2235 + 233722169 tatttttgttcaatTTGCAATTA-CTATTAATGATACCAAGAttttggagttttaaatttttcctacaTTCCCACAAGAAGCAAGTGGGACA------CTCCAGAGATTATATCCTC--TCATTC-------TATAGACAGATTCAATTATATTGTGGAAATGCAGCAGATTTTAGTAATTATGGACTAAACCAGACTAATCTGTTAGACTATGTTAATTTGCTTACTGAGTTATTGACTTATTTagaaaattatgaatatttagaaaaa-atgtaCTTTCTCATTAATTAGTTATAACATGTAGTTACTGatgaaaatgtgtaatttcttttttatgttatgctaatttcagatttttaaaagccttatTAAAATGCATCCATTATTTGTTAGAGTTAAAAGATTAGTT-TTTCCCCTGTATGCATAAGAAAATGGCATAATCCT-CATTTGCTACAATTTTTGAAGAAATC--GCTCTGGAGAAACAACAAATTTCAGTCCTATGAGATTTGCCTTTCAGTAGCACATTTACGTCCTTTCTTTGGCCTCCAGTAAAATATGATTATGTTAGATCACGTTTCTTCAGATATATACAAATTAGGCATATTGTGCAACATGTAGGAATTATTTTCCTAGTGTTTCACAATAGCTTGAATTAATTGAAATCCTTTAGGGTATGTGAGGCCAGAAGTGTGTCATGTTCATGGTATAGTAAGAAATAATTAGATCTGTAGTGAAGAGACACTCCCAATTAAAACTTTATGGGAAAATGATTCTGAAATTAGcttcaaggaaattgaaaggaagtAGATTATAGGCAAAATGTAACACTCCTCCTCCACAGTATtaag---aattatattttatgtCTGGAATCTGTGCTACCACTCTTG-------GATGTAATTTGTACGATACATTAAAG----TTAGGTCTGTATCAGATGCACTGA---AAAGACcatagaaaac--atttttgtgGAAATGAGAAGTAATGTTTATTGTTGCAATGT----CTTCTCACCATCAGCTTCAGATATAAATCTTAATAAGAAATG--ATGAGTGCGTGCTAATGTCATTTAA---TTCACGTTAGACACAGACTGATATAGAAAAATCTTAACTG-TTAGATTCCAGAAGTTGTTTCCAAA---TCTTGGTTATTATAGTTACt---taatacattatttatttaaccaGATGAAAAGCATTGTACAAGATCTT--------------CTAAGTTGGTTGATAAAATTTCAAAGTGAGACTGTCTTGAATTCACTTGAAACAGGATACATTttgaaaaaggttaaaaaaaagggACCTGCACAGGCCCCTAATTCTCATTTCATTGCCTTCTCTTGGAAGTTCTAATAgggtaattttttcttttacatatttccAACATTTAAGTAATAGGATTTCAAAGTATGAAGTGTT--CATGTAACTTTTGATGGAATTAAAGCTTTGggtgatatttttctattttgtaagaaaacatttattttattttttattttattttcagtaccagggattgaactcaggatcttgtgcttgccatgcaggtgctgtactactgagctgaGTCCTGAGCAAAAACTTAAGTTTATAAAGATTTAATAATTGGACAAATTTGCAAAG--------ACTCATTGGC-AGTTAGTAACACCTTTGGAACCAAAATCAAAAGCAGTGCTTTTAATT---------ATAAGCCTTTTGCTTGTATGTGGAATCGAAATAC-TTCCAGAGGGACAGATGTTCAACGCACAAAGAATAGAAACACTTTTTCAAAGTTAAATTTCA---GGACATTTATACTCATGCTGAGGTGCAGCTTTAAATGTTTTCTTGGATCATTATTGACATTCAATTATCTTGTGGAAAGATTGTGGCCTCTAGGTTTCTGCTCTAAATTCCAA-TTATAATTTACATAGTGCTTCTTGTGATTGGCAAGAAGACTGCAGTTTTATTCACATGCAGAATTTCAGCCCTGGATGAGTTAGCTATTATGTATAAAAGGAAGCATTTTAAGCAAATTGA-TTTTCTGTGTAAAGCATTAGTCCAAAAGGACTGCTTTGTGCGAAAATCAAGATCAATAGTCCTGTACAAAACTAAATTGAATCATGCCACTGCTTCAATTTTATAATAGTTTTAATGTAAGATAAATAATAAACTTGCTTTGGGATCTTCCTTATTGGTTGTCCTAGTTTCAATAACAGGCAGTGTGTAC--TTCATTACACCAGTTACTCTTGATACCAGAATTGTAAGTGGAATTTACAGGAAGGAGGCAGATGTTATGCATG

a score=21825
s chr3           149665403 701 + 160039680 AACACTCATGTTGGTTCACATGCAAATTCTCAGTCCTCTGGATTTCTTTGCATTTAAAAGAAAAGGGAGAAAAAAATAAAACAGCAATTCATTTTTCAAACCTTGGCAGGTGCTTCTGTCTGGCCTTGCGTACATTTCATTACATTCCAATGTCACACACAAAAAGCTTTTTTATAAGAAGTGTAATTTGTAAGTACTTTTGGaaattaatttaataaaatattCACTGAAAAC--AGATTAATTCCTCAATGTTTGTCAGCCAACACAACCAAGTGATGCCTGAATTCCTTTCTCCCTCTCTCTCTCCTTCCAACAGTTGTTACTTAGAATGCAATTATGATGTATGCGTGGAAGCAGATAATTGCTAAATTAATATCAACTGATTCACAAATCATAAGCTCATGAAAAAATTAAGCAA--ATTTGTAACATGTGGATGTACATCAAA-TAGGCCAATCTAAGGGTGAAAGCCGATAGAACTCTAAAACC--TTAATTTCTCTAAAAATCAGATACATTTAATATTAGTCCCTATTAGAAAATA-ATTTTTA--AAGAAATTTATGAAATAACTAGGACTTTTTGATCATCTGGAGTAATAGGATTGTC----TTTAAAAATGAG----TGTGAAATATTTGTACATCTAACAATGCCTGAAAGatttatttttttaatcataaaaaataattttCTTCTTATAAAAACATTGTAAAA
s HiC_scaffold_1 136283188 655 + 233722169 AACAAACATATCTATTCATTGGCGAACTACAAATCCCTTGAATTTCTTAGGTTTTAAAAAGAA--------------------GCAGCTCATTTTTCAAATCTTGGCAGATGCTTATGGCTGGGCTCGAGTACATTTCATTACATTTCACTGTCATGTATAAAGC-CTCTTTTA----AACTATAATTTgcacatatttttcaaaattaatttaataaaatattcactgaaaacaAAGATTAATTACTCCAGGTTTGTCAGCCAACACAACCGAGCGATGACTG--------------TggctttcattttgaaacagttgTTACTTAGACACAGATTATGATGCATTTTTGGAAGGATATGATTCCTAAATTCATATTAACTGCTTCATAAATCATAGACCTActgaaaatttaatgaaagagCTCTAgaatgtacatgtatataaaagtTGGAAAATCTAAGTCTAAAAACTAACAGAACTCGCAAGCCTTTTAATTTCTTCAGGAAGTAACTG--------------TCCTGTTAGGAAGTACACTTTTAGcaagatatttatg-aataattattatttttcagtagTAAGTAGTTGTATAATtgccctcttttaaaaaaaaactgctttgaaa-------atatttaagcatg--tggaatgttta-ttttttaattatgaagaAAAGTGCACGTCTttagaaaatagattaaaa

a score=24181
s chr3           149668379 1100 + 160039680 TAATCTATTGGTGTCATAATTTGCTTCTCTGTGGTGTGAGGAT----TTTGATTGCTAGACGATTAGCATAGTAGACGTGATGCTATGCATTATCTAATTTGATCAAGATGAAAACTCAGTGTGAGTATTAGTTTTGGGTTTtttt---tatttttattattatt--attattttattttttactttGAGTAATTGTGGTAAGTTCCTAAGATACCACACAGCTGTAGGGAATCCCCCTGACT--GAGTGGGT------ATGGGCACTCTCTCCCAGCAACTGCAACAGAAACGTTTCTGATTTCATG---------------AGTTCAACTCTGAATTTTGTCTGAATGGAATTCTGTGGCTGAACATTTTTTTTTAAATCACCAAATGGTTTATTTCAAAG---ATTCATGTTCTCTTTTCTAGGCACCTCTACTTA--CAAACCATGCACTTGAAGAGCTGAACTTCTGACTTGGCCACGAATGTTTCTCTCA--GGTTCTTAC--ATGTCAGCACTTGGCTGGGAATCTCCTCCTACGGGGCTGACCTGTCCTGAGATGATGCTGTGACAGGTACATATCCTGTGGAACAGAAGGAAGGATGACACAGCTGGCTCTCCCCAC-ACTGTTCCGGTGAGGAAGGGTCAGAGTTGTGCCTTTAATTAAAGTGAGCCTCCCTTTGTCTTTAATGTATCACACACATTTGCAAAGCTACTGGTCTCCTCCCATTGCAAAGCAT-ACTC--------AAATAAGTCGCCAGTGTGAAGAACCAGCCAAGAATAATAATTAGCTTTCTTACTTATCAGTTTTCAATGAGTTCCTTATTTATTTTCAAATCCTAGTGTCATATCTATTAAGTTAACAAATC--ACAGTGTTTCTAACATGCCTCTAGTATCTGGATATGCAAAACCAAGGCATATAAAGAAAAAACTTCTGTTCTATTGTATATTCATCCTGAATTAGTAGAAA----------------AAAATGAACCACAGACAGTG--AGAAACTCATTT-----TAAACATGAA----TGTATAATAGAATATAAAT-----------------------TTTCATCAAAAA--ATCAATA-AACAAAATTGAATTTTCCCCATTTGAGTTTGTATTCCCTCTTTCCATTCGTTTTTTTAACAAAAGAACTCAGTCAAATGAAACAT-AGTCATTT
s HiC_scaffold_1 136284548 1162 + 233722169 TAACCTACTGGAGCCATAACTTGCTTACCTTTACCATGGGTATAACATGGAGTTGCTAAACAATTAAAAGA-TAGGAATCAAGAGGTTTATCATATGATATGacctaaataaaa--ttattctgtatattagttttgcttttatttccatatttttattgttgctCAGTTATTTCATTGT--ACTT-----------GGTAAAGTCTTAG----------AGCTTTGGGGACTTCCTGTGGCTCTGAATGGATCAGAGGACCAGTACTTCCTATCACC--CTTCATCTGGAACATCACTGATTTCACATCTTGTCTCCTTCACCATTCACTTCTGCATTTTGATTAAAATGGACTTTACACTGGATCACAAGCTT----GTCAACAAACAGTGTATTTTGAGggacatttctttgtttttttccattcaaaTCTACTTTTTCGAATACTACACTTGAAGCACCAAACTTCTTATTTGGCACCAAATTTTTAGTTAGTTGAATCCTGTTAGTGTCTGTGTTTGGCTCGAAATCCCTCTCTTTCAGAATGAATCCTCCCGAGACAACTTTGTGAAAGGTAGACATGCTGTGGAGTGTAAGGAGGGGTGACAATGCTGGCTCTCCCTGTTACTGCTCCAGTTATATCAAGTTAGAGCTATGccattaattaaaaagaagcttcttttgtcattaatgtcTTACATGCATTTGCAAAGCTACTG---TTCTCCAAGTGTAAAGCattacttggaaaaaaaaaaaatctggctgtGTGAAGAGCCAGCCAAGAATAACAATTAGCTTTCTGACATAACAATTTCTAATGAATGTGTTATTTACTTCAAAATATCAGTGGCATGCCTCCTAAATTAAAATTTCCAACTTTGTTTCTAGCAGGCCTATATTGATCCTGCATGCAAAAAC--GGCATAGAAATCTAAAA------TTACATGTTGCATGCAACATGAATTCATGGACAGGTAAGTTTAATAGTTGAAATGAGTTATAGGCAGTAACAGGCATTCATATATCCATATCCATGACAAATTGAGTTGTAGGAAGTAAGTGGTCTTCACATATATATGAcaagtttcatttaaaattattgatattagaaaattgaacaTTCATAATTTGggcttttattttcaagtt--attcATATTTCCAGTGAGTGAATTCAGCCAAAATTAATGTcagtcattt

a score=54069
s chr3           149671999 1521 + 160039680 ATCCTCATGTTGA--TAAGTTACAAGGACAAATTATTAAAG-AGATGTGGAAGCAAAGATGGATGGTAGTGTCAGGCAAGAACTGGGCATCAGAAGCCATCC--TTTCCATAACAGCCTGTAGCTGAGCAGTGACCGTGAGTTAAGGAACAGTAGGCTTTTCTGCATGTTTTCTCCTCCTACTCTTCTCCCAGGTTCCCTCTTCATGTGGTTCAGAAGAACCTCCAGTGGCCAATTGTGGGTTGAAGATAATTAGCCTTTAATTATCACCAGTTATATTTTCACCTGTTTCACTTTCAAATCCCCATCGCTTCTAGTTTTCCAATTAGCTGATTCATTCTTCAACAAGGAAATATGGAGAATCAGGCTTTTCCTTTGGGAACCAACTTGCTCCCCACTAAGTTTTCAAGTTATATTTTAGCTCATGTAAGAAATCCCTTGAGGGAATCAACTTATTTTAATGTATAAacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacCAGAGATCTCGGATCAAAAGTGTGTTGTTCTCCCTGAAAGAGCTGAGTCTGACTAGACACTGGAAATCCTGTCTCTGGGGAGATTAGAATGATGAATATTATTCAAGAAAAGAACAAGCAGATTAAAATTTACACAAATGGGCAAGCCCTTATTTTCAATCTACAGAAAACTTTT--TACTCTGTTTTCC-TTATGGTTGCATGGGCATAGAAGTCTAAAGCAAAATACCAGGATGAGAGA------------------------------------------------------TAAATAAATAAATGCTTGAAATATCTTAGA---------------------------GAGTT----------GAAGAGAGTTAATGTAC-----------------------------------------TCTTCAACAACCTAGCAAATTTAATATAAAACATTTGATAACCCAACAGAAAAGCAATTTGCAAAAAGAAAAAAGGGAGGTAATTTACCCTGTAGAAGTTTTAATATTTTTATATCTTTGTATCACATAATATCATATATACATAGGGGTGAAAGTATAGAGAAATCTTATGTAAGGCTGTTCTGGGAATAAGGACTCATTAGCATGCAAATCATTTATCAAGATGCAAATAATTTAACTATAATGTGGTGAGGGTCCCCAGAGTAAATAATTTCCATTTTCATTACTGAATATGATACAAACACCCATAATATTTTCTCTGAAAATTACAGTATTTATTTAGAACTCTTTGATCTGCCAACAAATTTTATCTCCTGAACCTTTACTTGAAAACATGTAAATGACCAGATCATTTTGCCAACTCAGAAGTGAAGGCTGGAAAAATATAAGGTCAAGAATTGTGATAGCAGG--GAGCTGGAAACATGCAGATATTTCTAAAACATTCCTGGGTTTCTGAGTTC-TGATTAAGTGCAGTGCTCACTAATGCTTTTATGTTTGCATGATTATTAATCAATTTATCCCTCTTCATTCAAATTATAAAATATTCAAA--TATAATCAATGTGTTACTAGGTTCCATATCA-------AATACATATT---TTCAAATTTAATAGCATAAACAATATTATTAATA----AATAATTCGAAACCTCA--CCCCTTACA
s HiC_scaffold_1 136287327 1594 + 233722169 ATCTTAGTGCTGACTTGATTTATAGGAGGTAATCATTAAGGCAGAGTTTGGAGAGAAGGTGACTTGTAGGATAAGGCAAGCATCAACCGTCAGTGGCTAACCAGGTTCAATTTCTGC-TCTAGGT-AGCAGTACAGGTGTGT-AAAGAATCGTAGGTTCTTctgaatgtcttttcttt------ttctctcaggcTCTCTTTT-ATGTGGCTCAGAAGAACCTCCTGTGGCCAATTGTGGGTTGAAGATAATTAGCCTTTAATTATCACCAGTTACATTTTCACCTGTTCCACTTGCAAATCCCCAGAACTTCTAGTGTTCCAATTAGCGTGATCATCCTCCAACAAGCAAGTGTGGGGAAACA-GCCTTCCCTTTGGGAGCTAACCCCTTCCCCACTAACCTTTCAAGTCATATTTTAGCTAGCGTAAGAATACCCTGGAGAGGatctacttatttttatttgca---atatATAGCCACA----------------------------------------------GGATCTGAGATCAAATGTG---TGCTCTCATTGCAGTAGCTGAATCCACAGAGACATCGGGAACACCATCTCTGGGGAGGTCAGAATAATGAATATTTCTCAAG-ACAGAATAGATGAATTAAAACTCACTCAAATAGCCAAAACTTTATTTGCAATCTAAAGAagagttttccttttctgtttttcattatgGTTACATTTGaacaaaattcaaatgaaaaaccCTGGAGTAAGAAAAGATTTGTGACGTagaatattttttatcttctgtCAAGGGACTGAATCTTTATGTATTTGGGCAGAGGCTGAAAAGACCTTAGACTTACACTAAGAAAGGTAACTATTTGTGAGGtaatcccaaaagaaaaaaatatatatatataaatgggaGGAAAAAGTCTCATAAAGTTAGAAGAGCTCATTATCAAGAAGCtggcaaatttaaaataaaatattcactaaTCCCCC--AAAAGcatattgcaaagaaaaataaag--ggtaATTTACTTCATAGaccttttga-ggttttatatctTTGCATCACATGATATCCTATATACCTGGTAGTAAAACTATAGAGAAACCTTTGGAAAGGCTGTTCAGGGAATACGCTCTCATTAGCATGCAAATCATTTTTCAGAATGCAAATAATTTAACGATAATGTGGCCAGGGTCCCCAGAGTAaatgatttccattttcattacCATATATGATACAAATACCCATAATATTTTccctgaaaattacagtacttatTTAGTACTCTTTGATCTGCCTACAGATTTTGTCTCATTAATCTTCACTTTAAAGCAGGTGAGTGG--GGGTTATTTTGCCAactcataaatgaaaaaatggaaaacaaagggTCAG----TCTGATCACAGGATGAGTTTAAAACATATGGGTG------------TCCAGGCTGTCTGAGGTAGCAAATCAGTTTTGTgctcattaatttgttt-tttccctatGAATTTTAATCAAATTATCACGCtctattctaaatttaaaatattcaaaagtgtAATCAGTATGTTATCTGACCCCATATTATAATGTTAGTAAATCTTTAATGTGAACTCAGGAACATAAGGCATACTCCAGATATTTGCACATTTCTGTATCTCAAGCCCCTCACA

a score=106056
s chr3           149681262 2897 + 160039680 TCAGTTTATACCAGGATGATAAATGGTGGTCTA-AACACAGTTCAATTATATTATGAATTATGTCATACACACTGCTGGAATCTCT-----------GAGGCATTAGGAATCATGAAAAAAA-AAAGACAAAGCAAAAATACATATAGGATAGCCTGTGAAAGAAATGTGATAGAAATGGAAAGGTGGAATTTGAAT---GTCCTTACAGCTGGTAGGATTCTACCAGATTATTGTTCATACTTTTGCAAGAGGTCAAACTATATTGTTGGTAACCTGTATTCTTATAAAACAAATGTACTCTGTTTAAAAAATATGAAAAGCTTCCCCCACTAACAGAAAACATAGAAAAATCGGAACTGAGTGTTTCAGGAAATTAAGCAATGCATACAAAAACACgtgtgtgtgtgtgtgtgtgtgtatgAAAGCAATGCTGAATAGATT--TCTAAAGGAAG-----GAGTGTGCACTATTTCATTAATTCATTTTATTTCTGAGTCATCTGGATGGCTGCCTTCCTTTGTGTTGGTTAGCATGGCCTTTGCTTATTTTA--------CTCTGTAGCACTCTCTTGCCTTTATGAATGCCTCACCTTGTAATTATTTGGTTCTCACGCACTGAAGTCTTCCCAGAAGACTGCGAATGCCCTTGTAAAGTGGTCAGAAGTCATTAACATCTGTGACATTTAGGACAAAGGAA-AATATTTTCTACTACATTTACTTTGGTCTCTAATCATACAAATAGAATATATGTGCACATGCAAgtgtgtgtatgcctgtgtgcctctgtgtgtgtgtgtgtgtatgcctgtgtgtgtgtgtgcgtgtTCAGTGTATTCATGGGTGGGCTCTCTTTTCTCACACATTCTTTTTCTGTTTTTCAACCCCCAATCCCTCCCATCCCCCCACTTACCACCCCACCCTGGCCCATGGCCAAGAAACTATCATCTTATTGTAGAATCCTC-TTTTATCTCAGCTTTTTC----TCCTCCT--TTTCTTTCCTTTCCA-CACTGTTTAAAAATTTTCAGCTGCAATTTAGTTATAATTCACAATGGAATAAGTTAATGGAAAAT-TTTGAAAGGAGACAACCAAATTCACTTTAAAAATAGTTAATTTGAATCAAGAATGTTCAAATAGGCAACAGGAAGTCCTAG-AAAACTATCA---------AGCTCGCCACTTTTGAAATAGTGAGTGCTGGGAGCGCTTTCAGCAATTCTGGACATTTCAGTGTTCATGATTCATATGGTGACTTAGTTTAGAACAGGAGAAAGACAATTTACTGGCTGACAGAATGTCCAGTTATATATTTACATTTCCTCGGGACGGAAAACAGTCACAACACCTTGGGTATTAGTTTCCCGTTTATTGGCCTTTTGCATTTCACACACACACAAAAATAGTCTCCATTTGCAATTATTCATGAGAATGCACAGTATTCACTCACCAGGGTTGAGGCTGCATGTGTTTCATAGAACTTCatcacctagatgttatttaaaacacagaattctgggcttcaTTTAGGATACAACTGGTATTTTATGTAATTATTGGAGGGACACTTGCAG-CTGATGTTAACAGTTTACATCTTTCCAGCAATCTCTAACAGCAAACTTGTTTCAAATGAGTCCCTGAGAAAAACACATTAACTTTGGAAGGAGTGATGGAACCTCATTTCCTTGGTGGAGGAGCTCAGCCTCATTATTAATAAAGACAAACAAGTGCAG-AGAACGAGCGTTTACCCCCTTTTAATGGACTTTTAAGTCAGTTTCTCAAGTTGTTGATGAATGCaataaaataaaattaaattaaaaGAAATGTCAAGGACAAGAAAACAAATTTAAAAATTAACAAAGCCCACAATAAATTAGCAATTACATGTCCATCAAAGGTTTTAAAGACGGTTGATCTTGGCAAAAAGT-GAAAAAAAAAACAACGTTATTGTAGTTTTAGCGGGAACAATTATTATCATTGCAAATTACTTAAACTATTAAGCTGAGAATAATTCAGAAATATCATTAGCAGTCAAATTACTGAAAAGGCCTGTTTTCTTTCCCTCTTTGTTTAATTTAAA-TTAATGTCTGCTTATTCTCACACAAGCAGAAAATGCTGATAAATAATTCCAGAGCATGCCTAAACATCTCCCTTCACAGCTAGCTTCTAATTTGATCTCTGGAGACCCTTCTCAGGAGCTGAATAAAATATTTTCATTTATTCTAAGAGAGCCTCCTTCCTCCACCACACAGTTCTAATCTCGGGCTGTTCCGTAATGCCTCTAGATGAAGTCTTCACCAAATCATTAAACTTGTTCAATAACGACGTAACAAAGCACAGGAGACTTGGCGTCAGGGCAGCAAAGATGTTTTTCAAATGGAGAGAAAGAGGGAGCGAGAGACAGAAAAAAAACTTTAATAAGCCAACTTAAATTTCTAGGGCAAGTTGGAGAGATTATTGAACACTTGAAACTTTGTAGCAGGTAGGGGACAAGGAGACTCTCAAGTCCTTGGTGCCAGAACGTCTGGCGAGGGCCCTTACATGTGAGTGGGAGCAGAGTCCCTGAAGTTGCCTTTGCTTTTGGAATTCAGCTTCAGATGGTGCCTGGGTCCCAGGACACTTGCTGAATCCACTCTGC-AAAGTACA-GGCCCTGTGGAGCAGCTTGTTTGTTCTTCATACAAATAAATGTCCCAATGATCAGATAATGAAAATTACTTTCCCCAAACTGTCTGGAGCCGTCAAGATGCAATTTGATGACATAAGATTAAAGACTTGTGAAAAGGAAATTTTTCTGTCCTAGGCTGGGATAACCCACCATACACATTGCCAATTCATGCCATGCAAGACACATTGCTAATTAAGCAGCTGTGTTAGCAAAATGAAACAACTTCTTAATATAGGAAGGTGTCAGGCTCCCAGCCAGGGTGGGGATGGA
s HiC_scaffold_1 136295799 2618 + 233722169 TTAGGCCATTGCAGGGCAATTCATAGTGGTACACGAAATAATTCAATTTTATCATGAATCATAAGTATTACACTGATGGAATTTCTATACACTTCTTGAGGTATTAGGAGTcatgaaaaagataaagataaaggaaaagt---CATGCTACAGATTATGGGAGAAA----------------AAGACGTTTTTGAAAACAGTCCTTTCTCCTTGTAACATACCAACAA------------------------------------------------TGCagttatgaaaaagaaatttaat---ttcaagGGATCTCAGAGACTTCCTTCATAACTAGGCAGGACAAGAAAAACCAACAACCACGCTTCAGAAAATTAAGCAATTTAGATGAAAAGACGACTAGATATAAATAT------CTGAGAGTATTCTTCAAGAAACTAGTATGAAGGTAGTTGCTGAATGTCTACTAAT---------------ATGTCTGTCTCACTTA-----CCCTTTTCTTTTGTGCTG-TTAATGGGGTCTTTTCGCATTTTAATTCACAGCTTTGTGTAGCCTTTTTGACTTCTTAAATGCCTCCTCTTGTAATTATTTCATTCCCGAGTACTGAA----------AGAGTTGAGAATGTCACCACAAAGTGTTTGAAAGTCATTAACATCTGTGGCATTTCAGattaagaaagaatattttacacCAAATTAACTT----CTCAAATCACACAAACAGGGAATTTGTG---------------------------------------------------------------------------------------------------tgtctttcacattttttttctaatatatttccCCCACTC-------------------------------------TGGGCAGGCAAGTGTTATGCT-TTACTGAATCTTCAGTTCAcctctgcttttttgttgttttcctaatttctttcctttccagttctttttaaa---tttaaggtgCAATTTAATTCTAAATCACAATGGAATAAGTTAATGGAAATTATTTGAGAACAGAGACccaaatcc-ttttaaaaatagttaatatgCAACAAGAATATTCAAATATGCAACATGCATTTCTaggaaaaatatcattttcataGAGTCTGTCACTTTTGAAATAGTGAGTGTCAGGGGAAGTTTTAGTAGTTTTGGTCATTTCTAGGTATATGATTAATATGGTGACTTAGTTCAGGACAGGAGAAAGACGATTTACGAGCTGACAAAATGTTgagttatatatttacatttcctCAATATGAAAAGCAGCCATAACACTTAAGGTTTCAGTTTCTAGTTTATTAACCTGTTCCACCTTTtgcaca-----aaatattttcaaataccaATTGGTTCTGATAATATGCAATGTTCTCTTATGAAGA---AAGTTTAATG-ACTTCATACAACTGCATCATCTAGATAATATTTAAGATACAGATTTGTGAG-TAAATTTgagatgtggtt--ttttttatttaattatttaaggGACACTTGCAATCCCATATTAACAGTTTATTTCTTTCCAACAAATCCTAAAAGCATACTTATTTTGAATGAGTACACGAGAAAAGCACATTAATGTTGAAAGTAATAATTAAGCTGCCTTTACTCTATCTACAAGCTCAGCTTCAttataaataaagacaaacaaGTGCAACATAAAAAACATTTATCCCTTTTTAATGGACTTTTAAGTCAGTTTCTCAAATTGTTGAtgaatgtaataaaattaaattaaattaaaagaaatgtcaATAAGAagagaacaaatttaaaaattaacaaagccCACAATAAATTTGTAATTACATGTCCATTAAAGGTTTTAAAGGGGGTTAATcttggaaaaaggaagaaaagaaaatcaacgcTATTGTAGCTTTAGTAGGAACAATTATTATCATTGCAAATTACTTAAACTATTAAGCTGAGAATAATTCAGAAATATCATTAGCAGTCAAATTACTGaaaaaacttgttttctttccccctttGTTTAATTTAAACTTAATGTCTGCTTATTC-CACACAAGCagaaaatgcagataaataaTTCCAGAGCATGCCTAAACATCTCCCTTCACAGCTAGCTTCTAATTTGATCTCTGGAGACCCTTCTCAGTagctgaataaaatattttcatttattctaggAGAGCCGCCA----CCACCATACGTTTCTAATCTCGAGCTGCTTGGTAATGCCTCTAGATGAGGTCCTCAGCAAATCATTAAACTTGTTCAATAACAACGTTACAAAACACAGGAGACTTGCTGTTAGTGAAACAAAGAAGTTTTTCAAATGGGGGG------------------------AAAACTTTAATAAGCCAACTTGAGTTTCTAGGGCAAGTTTGAGggattatttaacattttaaacctCTTAGCAGTCACAGGACAAGGAGACTTCAACATTCACGGTGTCAGAATATTTCTCAAGGACAGTT-CAAGTTAG-GGGACCACAGCCCTGGGACACTGCTTGACCTGAAAAAT-------------GTCTCTGCACCACAGACCTC--------CCAGCCCTGTGGAAATATATGAAACTCTGGACCGGCAACttagtttttaataaaaatatatgttctgATGATCAGATAATGAAAATTA-----TCCAAACAGTCTTGATCCATCAAGATGCAATGTGATGAAATGAAATGagaattttgttaa--------tttttggttCTAGGCTAGGA----ACATGATA-GCACTGATAATATATATCACA-ATGACACATTACTAATTAAGAAGACACCTCATTGGAATGAAGCAA-TTTTTACTATATGAAGGTATCAGATCTCACACCAGGATGGGGATGGA

a score=43299
s chr3           149694452 1249 + 160039680 AAAACACTGCACATTCAGCAGTAACTGAAAACATCACAGAACAATTCATGGAAAGGCCATACGACACACTTCAGATATCAAGAT-TGCCTGGCGTCAAGAAACAAGCAGTCAGCATTTTAGGTTACACTAGTTACACTAAGAGTTTTACGTTCCTTCCAGTTTCAGTCATGAC-----------CTATATACAAACTGGTAGGTTACAGAGTGCCCATGTGGTGGATGGAATGTGGACAGGAA--------------GCTATGGGTAGGTAGTAGGTGAGGAGAGCCAAGGGCATGGCTTCCAAGATCTACGTTTCTTACACTCTGATTGATG--------------------------------TAGTATCTACAGAAAGGTTTGAGCGTGCTAATTCTGATGAATGTGTATTGGGCTGTTAGCACATCTTTTAATTGTTCAGCTAATTGGC-----TCTTCCTGAATTACTTTGTAAAGAGCAATTATCTGAGACCACGCTGTGGCAGCTTGGTCCTGCAAGAGACCTGCTCTTGTGAACCACTTCAAATAAACCTGGGTTGTTGAGCTCCCTTCTAGAGTCATCCTTCATGTTCTCTCTCGATTTGGAGAGATCTTTCAGAGGCAAACCACAGGAAGACTCGCACACAAGAATTCCCCGAGGTCAAAGCTGAGAGCCGTGCCAGGTTGGAGACTCCAGGCATAAGACAGCACTTTGGGGAATTttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttttttttTACGGTGCCTGCCAAGTGGGAATTAGAGATAAACAAGACAAGTGCAGGGCTTCTCATAACTTTACTTGTGAAGGTGAGAAACGAAGAAGCCTCTAATTAACAAAGATGGTTTGTAACCACAGATTGAATTCCAACTCCCGTGGCTGGGAATGCTTACACATGGACGTGCAGTTCACTTCAGCTGCCAGAA-TTACAATCCATTTCCTCCCTGGAATGTCTGAATCCATATGGGTATTAGGGATGCCCAATTCTTGTCAAGGAGGCTTTGATAGTTATGGGAAAAGATAGCTAAACTCAAGCAGCTTGGGAAAGGGTGTTTAAGTATAGTTTCAAACTGCC--TAACCCACTCAGTGAATTCAGACAAGGAATAGGTGACTGCGTCAACAGGACGTTTTCCTTTATTTGAATATGAGTTTTCACATGTATTTTAGGATATTTTGGGGGAACTTACA---AACTTTTAAAGCACACCAGAGAAGTCAAAT
s HiC_scaffold_1 136302619 1184 + 233722169 aaagtgCTACTTATTTGGGAATAACTGAATATATTACAGAACAGTGCATGGAAAGAACACCCTGTGCACTTCATATTTTGAGACCTGGCTGATATCTAGAACCATGTAATCAA-----TAGTTGATACTAATTCATTTCTGGGTTTTAGGTTTCCTTTATATTCAGTCCAGTCATCTTAACTTACTGTTTATAAAGAAGGAGGTTG-AGAGTATTCCAATGGCAACTCTAATATAAACAGAAATGATCagatcccaggct---ggtggatggTATGTGATGAT-GATAAGAGCATGGTCACCAGGATCTATATTTCTTAAACTTCGATTGATGCAATGTCTATAGAAACATTAGTGAGTGTTATGTAATGTCTATAGAAAAGTTGGTGGGTGTTAATTCTGATGAATGTATGTTGTGCTTTTAGCACACCTTTTAATTGGTAAGCTAATTGGCCTAGCTTATCCTGAATTACTTTGTAAAGAGTAATTATCTGAGATCATGTTGTAGCAGCTTGGCCCTGTAAGAGAAGTGTGCTGA--AAACAGTTTAAATAAACCTGGCTTGTTGAGTTATTGTTTTTAGACATCCTTCTTGCTCTCTTTCAATTCAGAGAGAACTCTCAGAGGTAAACCATAGGAAGAC--ACACGAAAAAATTCCCTGAGGTCAAAGTTAGTAGCTGCGCCAAGCTGGAGAGTCTAGGCATATGACAGCTCTTTGGGAG---------------------------------------------------------------------------------------------------TTACTTTTTACAGTGCCTGCCAAATGGGAATTTGAGATAAGCAAGGCGAACATTGGGCCTCTCACAACTTTACTTGTGAAGGTGAAAAATGAAGACGCTTCTAATTAGCAGAAATGGTTTTTAACAACAGTTCAAATTCCAATTCCTGTGGTTGGTACAGCATACATATGGATGTATAGTTAAGTTTAGTTGCCAAAATTTACAATCCATTTCCTTTCAGCAATATTTGAATCCATATGGGTATTAGGGAGATCCAATTATTGTCAGAGCAGCTTC-------------CAAAATAGTTAAGCTTAGGAACCTTTTTCAGAGATATTCGGGTTTGGTTTTAA--TGCCTATAATCCCCTTAGTTAAGATAGAATGCTGATAGGTGACTGCTTGGaggtgatatttttctttcttaaaataaga-----taattatatttaatagtattttagAACAACTTAAAGATAATATTTTAGGTGC-TTAGAGAAAGCAAAT

a score=97408
s chr3           149703396 4474 + 160039680 [encoded data, 4847 characters]
s HiC_scaffold_1 136316411 4309 + 233722169 [encoded data, 4847 characters]

a score=45669
s chr3           149711151 2919 + 160039680 TTTAGAGATA--GTGACAAATGTGTATTATATGGTAGATAATTTAACTCAGAGATTCAAATCTCCTGAGTTGTGCAAA---ACTACACTTGTATACTTTAAAA--------------CGTGTACTTAGGAAATAAGCAGTTTAATTACAGTATAACACATGTGTATAGGTGTGTATTTTAACTTGGTTGACCTT-ACTATGGAAACTGTC-CATTAGACATATAAT-GAGTCCCTAGTATTTTAC-CTTTTTCTCAGACAGTTTCTAGTGGCAGCAGATGATAGCTTAAATTGAAAATAATTTAGTGCTTTATTATGCCAAAGTTACAGTGAGTATTAATGTTCTTGGACAGTATAAATGTCTGGAAAGACAAACATCCAACTGGATTCAGTAAATTAATAGCTGAGTGTTCACTGATGGATGACAGACTATAGGGATAGGACTGATCAGCCCAGACACTATCTTACACTTGTTCAGAATATAGACACATTTCTATGCTATGGTGTACTTCCCTTAGAAGAAATTTCTATAAGAAAGTTGTGctgtacatgcttgtaattgagaggctgaggcagaaggatagaagtcatgagtgtgaggctgacaaggcctacaaagtgagattccatctcagataaGAGGAGATGATagctgggcgtggtggcacatgcctttaatcctagcactttagaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcctgagaaaccctctctcgaaaaaccaaaaATAAAAAAAAAAAAAGAGGAGATGATAATGTTGATGGTGACAACATTGAAATGGTGACCCAGGTATATAATTATTGGGAAATCAGATCATTGTTAGTGATTTATACACTGCTGGGTATAACGTAATGTATTT-GCTATTATCAGACACAAAAACTGATAGTGTCAAAAAGAACATTTGAGAAAACAGATTG---------------GCGTGTCCAGTT----GCCTGAGTTGTTGAGATTCTGGTAGAGGTTAAAGCAGGTAGAAGAAAAGAATGCAGGTAGTTCATACTTAATTTCAGTGCTGCATGTCTCCACTAAATTCCCTGCCCTAGCTGTGGTGCATGGGAAGGAGGGAGCTCACACTTCAGGAGCCCTGCTG-------TGCTTCCTGCTTCTCTCTGAGTGACTCCCCCCATCTTTGCTCCAGTAAGTACATTTGGAAGATATAGGCAGCAAGCTACTTTCCTGTAGACTATGCTTTCACCCTTGGAGAG-TGAACACACACACAGTAGTGTCCTT---CTCATGGATTTCTAcagggcttctatt---agtgcgactgac-tcctaagctagataattcttagctgtggggataatctggtccatctgcagaatggtcaatgaacagttgacttctgcccactaattttgttggactttcacccacat----tatgactataaaagcttgtccacctacattggcaaaatatttgctagaagcctaagtttccccagttagaaGTAATTTATTAATA--ATAGTGGGGAATAACAGACAGAATTAGTAGACACATAAATATTGTGATTTCATATAG-GAGACACAAAATAATGAAATTGGAAGTTACTAGGGATGGTAGAGATTACAGAAGGCCAATTGAGTT---------TTCTTCATTTGACTATGG--TCATGTAAACCCAGGATGCAGTT----GTTTCTGTCTGCTCCAGAA---------------------------AGTAGAA------------TTCTGTCGT----CTGTCTGTCTGTATTCTGctttctgtctgtctttctttccttctttctttTaaatttgcatgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgggcatgcatgtgtgtgtatatatgggtatatttgtatatctgtagtgtgaatgtatgtatgtttttgtatg---------tatagcacatgagtctgtgcatgggtacatgttgtgtCCTTGTCTTGGCTTCTGT----GGATTC-------AAATTTTTGTTTTCATATGTTATTGCTTTACCTATTGATTAATCTCCCTGAGTTTCTTCAGCG-AGTGTTCATTCAACTGCGTCAATAGAAGCACAGGACACACAGCCCATAGAGGAAATGGGTATTCTGCGGGTGGAGGGATAAAACCTTGCTAGTGCTGCGTAGAACTGCAGGCTGCGG----GGCTGCGGGGCTGCAGGGTATGGTTACATGTCTACCAATCTGTGGCAACCAAGGTACAGTCAAGAAACATCCATTTCT-ACAGGATTTATGAAAAATTAATACATACAATATTAA-ATGAC---------TTCCCCCCTTTTCC-TTCTTTTCTTAGAAATATCAGCTATTAGGAATGTGGTTTTGTTTTGTTTTGTTTGTTTTCTCCTAGAGAGTAAGTTTTATTGGATGT-ATTCTGAGTAGTTCAGTAATGTGAACTTAGAAAG--TTTTTATCAGATAATAATTCACCCTAAAATACAGTGCATCTCTAACACCATGAATTAAAATAT--GTTGACAAAGAGATATTGCCTTTTACACTGGGTAATACAGTTGT-ATGGATTTATGGTTAGTACATAATATTAAGTGGCCTGGACAGGGAAATCTCATTGAGCTCCTGGGAAAGACTGTAACTTGCATTTCCTGCTGACTTATGTTTTCCATGGCACCTTAATAAGATTTATGGAATATTTAGTCTTTGATTCTTTAATTATAATTGGCAGGTGTCCCTGAAGTTGTAAAGCAATTAGGAAGCCCGGGGTTATTTGCTTATTACAGCAGCACTGGTGGACTTGATTTTTCTAGGCTGTTTATTATGTCTTCTTTCCAATCATTTATCATTCTAGATTGGATCTCCAAAGGATAGTATCCTAGCCGTGACCGGTACCTCAGGGCACAGATAAAGACAAGGAACCTGGAGAACACAC-AGGTAATTTTATTTCTCAAGAGACTTGACCATTGGTGACAAAATTTAACACCTTACACCATGAACTGGTCTATA
s HiC_scaffold_1 136320734 2548 + 233722169 TTTGGGAATAAAGAGATCAACAGGTATTACTTGGT--------TAATTCAGAGTTCCATATCCATTGCActccacaaatgcagaaaacttctgtgctttcaaaatatttgttgacAATCTGTACCtatgatatatatatgtgtgtgtgtgtgtg-----tgtgtgtgtgtatgtcttctAACCCAAttgatctttattttataaaatgtcacattaaaaacatttttgaataacCTGTGTTCTGCATTTTTTCCCAGGCAGCCACCAGAGGTAGCAGATGATAgctaaaagtgaaaataatttactaatttattttgtcAATGTCACATCAAGTATTAATACGCTTGGCCAAAATAAATGCCTGAGAAGATAAACACCCAATTGGATTAAATAAATTGACAGCTGATTATTGACTGAAGGAGGATAGATTTCAGGAAGAGGATCTGTAAACACAGATACCCTCTTACACATGTCCAGAATGT--------------GATATGG-GCAC--------------ATTTCTAT------GCCATGCTGTA-----TTTTTTGTGCCAGCCTTGG--AGAACAAT----GTCACAAGAATG-------------------------------------------------------TTGATGTGATAGAATGTG----------------------------AGTGGGGGGAGCTCT---------------------TACAA------------------------------CTATCAAG-----------------------------------------GATGGTAACAA----------------------------------------------TTATGCATGATTTATATACTTCTGGAAGCAGGTTAATATATTTTGCTGTTATCagtcataaaaac-----------aaaagcagagtgaaaaaattaaattatgtatcAGAAACTCCACATGACTAAATATTAGCCTAAATC--TGAAATATT--TGGAGATTCAAGCAGGGAGGAGGAGA--------------------TGGCTTCATTTAAGGACATCTGTGCTGGGA-----ATCCGAGGAAGAGAGC-CAGGTAGGGGTAAAGTCACATGTATCCTGCCCTACTGGATCCTCTCCTTGTTGATTTTTCCCAA-----TCACCCCACATTT--------ATGTCCATTCAGCAGACATATTCAGGAGGGTACTTTGTGCCAGACAATATTCCAGCCCTTGGAGTGATGAGGGGAGCTCTGACAATGTCCTTGTACTAATGGGTTTGTGTCAGTTTCTCATTCTGGATACAACTGACATTTTAGTACAGGTAATTCTGTGCTGAGTGAGTTTCCTGGCACATTTGTGAGTTATTCAGCATCTCTTGGACTTTTACCCACTA------TAAGCCTTTTACCCACCTAGGCTGTGACTCTTAAGAACTATTTCCAGATGCCACCAAATGTCCTCAGGGAGACCAAAGTGCCTGAAACTAGAAACCACTGACCTATGTCACAGTGGAAGATGACCAACAG--TGAATCAACAGACAAATAGCATAATTGCACATAGTAAGATACAGAACAGGGGAC----AAGTAACTGGGGAGAGTGGGGA-----GGAAGACAAGTGAGTTGGTAGAGAGTACTTAA----GCTATGGAGCCTTCTAAA-----GAGACACTTAGAAGATTCTGACTGATGTAAAATATCAGTGACGGAGTTAGAGAAACAAAAGTAGCAAAAGCAAAGGCCTTCGATGATAAGATGGCAGGTCAAGAGACAGTCCTCCAGTTGTTCATGGTTCTGCAAAACTATGAAGCCAGCCAG-------ATCTG--------------------------------------------ACAGTTTTCTG---ATCCCAGTTCTCTTGCACCACTCT---GTTAATGTATTTTTAGTTTGGACTGGAGAGATAACATAGTGctggaacacttgcctag-cacgtgtgGGGTCCTGCATTTGGTCTCCAGCACAGTATCCCCCTCAAAAATTTCTGCCTTTAAATAC----------CCTAAGGTGGAATT---ATGACTTTCTGCAGAGGAGTGATCT------------------------GAATCCACACCCAATAAA------------------------------------TATCAGTG------------GCTGGTTATGGTTAAGGGTATGAGAAAAAAGAGT-TGATGATAT---TAACTATTAATAG------AGATATAGACAGGACACACAAATTTCTTACAGCAAACACAGGATATTAAtgtgtaaaattttaatatgataatctgcatttcttcccttttccatttGTTCCTTGAAAATATATGCTATCACAGACAT-------------------TTTCTGTCCCCAAAGAATAAGTTTTATAGGAAATCACACTGGGTAGT------ATATGAAATTAGAAAGACTTTTCATCTGATAATAATTCATCCTAAAATACAGTGTATCTTTGACACcatgaattaaaatatatgttgACAAAGAGATATTGCCTTTTACACTAGGTAATATACTTGTTATGGATTTATGGTTTGTACATAATATTAAGTGGCCCGGACAGAGATATTTCATTGAACCCTTGGGGAAGACTGTAACTTATGTATCCTGCTGACTTATGTTTTCCATGGTTCCTTAATAAGATTTATGGCATATTtagtctttgattttttaattataattggCAGGTGTCCCTGAAGTTGTAAAGCAATTAGAAAGCCTGTAGTTATTTTCTTATAACAGCAGGTCTGGTGGGGTTGATTTTTCTAGGGTGTTTATCATATCCTAGTTCTTTCCATTTATCATTCCAGATTGGATCCCTGAAGGATAGTATCCTAGCTATGGCTAGTACCTCCAGGCAGAGAGGAAGATAAGAAACCCAGCGAATACACGGGGTAAGTTTATTGCACATGAGATTTGCCCATCAGCAATAAAATTTAACACCTTGCAGTATGAGACTGTCCACA

a score=12321
s chr3           149715162 685 + 160039680 AACACCTTACACTATGAACTGGCCTATAGGTGGTTATTAAAGGTGGAGGCTGATTTGTTCTTAAAAGCTACCACAAATTTTAGCTCTATTAATGCCTGAAG----------------GATAGTAAAATATTCCATGGTTTTAAAATCCCTTTGAGTGGATGAAACT-TCTTATTCCATCCTTACAGAAGTTTTAAGTGCAAATTTTGAAATAC----AAATGAATGCAAAACAAATGGAATCTATCATCATGATTCATTGTACAGAGACTCTTTGTTTTTGTTCTAATTCAGGACGGGC-TTTATAATCTTTGAA--GTGATACATTTATATAAATTTC------AGTGAAAAGGAAACTTCAGTTCATTTTCCAGAATGTTTTTCATATCTGTCATTTTTTTGGAAA--------ATTATGATATATGTTAAATATGCTCAATGTGTTTATTTCCTCAGTACACTTTTATTTCTTTGTTGCCATTTGCTAGGT--------------------AATGGATGCATGCAAGTACAATTTCTTCTCTCAG--AAGTTTGCTGTCTGAAGAGGAAACTTTTATTCAGCATTTTTTCAGTAAATGTATATTGGATCTGTCTTATTTCTCTTGTAC-------AAAAATATAAGCCAAGTCCTGGATTAGTGGTATTTGCTTAGTTGGACACATTAACTG-TAAGTAAATGAGTATATAATACTAATGCAAGGAATAAAAACAAATCAATGCAAGTAT
s HiC_scaffold_1 136323254 687 + 233722169 AACACCTTGCAGTATGAGACTGTCCACATACTGTCACTAAAATTGAAGGCCACTTTGCTTTTAAAAGCAACCACAAATTTTAACTC--TTGTTACTTGAAGTCTTTATTTATCCTGAGATAGTAAAATGTTCCATAA-TTGAAAAGCTCTTTAAGTAGATAAAcctcttttatt------ttatggaa---------gaGGATTTTTAGATAtcttaaaacaaacagaaaacta----agTCTGTTTTCTTAACTACCTCTACAAAgactctttgatttt-ttttaaatcaggaaagaCTTTTATGATCGTCAAAATATATTAcgtttatgggtttttttttctaaaaaagaaagatacctcAGGTAATCATTCATAGTATTTGTAAT-TCacacaaatatttgtaaatgGACAATATCATGATATATGCTAAATGTTCTCAATA-GAGTAATTATTCAATGATTATTTATTGGTATTTTCCTATATGTCAAATATAAgatatactgaaagaaaaaaaaatatatatatatatagtttctttcCTCAGttaatttt--------------aagcatttattta-------ttcaataaatatttactataatatTCTTGCTTCTCTTGTACACTGATAAACAAGACAGGCAAACCTCTAAATTTGTTGCA-------------AGgcattaaaaactaaacaaataattacgtaaaac-aatgaa------aaaaataaatcaaaggagATAT

a score=37982
s chr3           149719809 1565 + 160039680 TTTGAGGTCCTCAGAGTTTGTTCTTTGTCTCCTGCTTCAGGAGGGATGCAAAGCCCTGTGAGC------CGCCCTGGAGTCA--------GAGGC-----TTCATGCCTTA---------GGTGTGGAG-TCTGGCACTTATCC---ACAAATC--TAGGAAGCTGTGCAGAAAAACCCAGCATGAACTGAGGTTTCTAGAAAAGAATTCTGCTTGCTTTCCACATGGA------------AGTTTTCTAT---------GCATCTCTTTCTCAATGCATGAAATTTCTGAGAATAAACAGTAGGTTGAAATGTGTGGTAG------------ATGCCTACTTATGTAATAGC-AGATTCCAGAATAT-TTTCACAGATTTCAAATGAGTCCTTCTTATACCTCAGTTGTCTTAGTGACTGATTTTTAACTTAAACCATAAGTTATTATGACCTTAAAATCAAAAC---AATTTAAACAACTACAGCTTTCTATTAAATTTTATGTGTACTCAGTGAATAATTGGATTTCAGAGGGCGAAGGGACTGGTT--TCAAATCCACCCAGCAGATTGTATACCGTGTATAC-CAATGAAGA-------GGGTGAGGTAAGGCCTGAAGATCTTTTGGGTTTTTTTTCCTACAAAGTTTGTATCGGCTCC-TGATGGAACAAAGGCCTTCTGACTCCCCGGTGACGG-CTCCTTCCATTACATTACACTCTGCTGTGATGATCTGTCAGAGTGATTCAGGCACAGGCACAGTGACTGTCAGTCAACTCAAGCACAATCCACTAAGCTATGCTAATTCCCGTAAAAACCGAGATGACACACTGCTGAAGAAATCCCCCCTAGGACTTCCTTCACATAGATTTGCCCATTTATGGAAAATTTATCCTGCTCTGTGGAATCTTTTTGTTCTCTTTATGCTATTCCAATTTTCAGGAGCCCAGGACTCTTCAGGATTCAAGGAAGACCAAATGAGGGA---------AAAACTCGAAGATG-----------CTCTCCTGTACGGGGAAGCAGGCCTTCCTGGTGATTACCTGGAGTCAATGAAATGAG-AAGGTGCGAGCTGACTTTCCTG-------------------AGAGTGATGGCAAAGAGGGGACAGAA---GTTCTTAAGCAGGTCAGAACAAA-GGAAAGTTACCTGTGA-AAGATTCCAGTAACAAGAGC---AAGGAACCTAAAGCCATTTGGTAAATGCAAGATTATCATGG-CTCCATGAGCCCTTAAAATGAAACCAGAATGTACAAAAATAAAACCTGCAGCTTTAGCTGCTAAAGAGCGGCCATTGCTCTCAGTTTCAGGTTCAGCTCGTTAAGGATGC---AAGACATTTTCAGAAAAAGACAAGAACTTCTTGCTTTCATTACGAGCAA-------------CTTTGATTAAGGAAGGTAATACCAGGAAGGGAATTGCTTGGTGATGAGGGGATGATCGGAT--------GCTGCCCGGAAGACTTGAGTCAGGAGGAGACTTTTGCTTAGGAATCAAAA-GTCACATCTAGACATGAAGGAAGAGCAACAGTTTGCAGGATCCCTAG---AATGAACACTTCCGAGATGA---CATTTCCTGCTCAGGAGACACAATGGGGTTTACAGGAAGAGTTCC--TTGTAAGCCAGCCCCCAAATTTCTCCATTG------TCTTTTTTTAAA----AAATTACATTTACTTGT
s HiC_scaffold_1 136327181 1674 + 233722169 TTTGATAGTCTCAGAATTGCTTTTCCGTC-ACTGATTACACAGGTATGCA-----CTATGGACAGGACATGCTCTGTAGCGATATTCGGGGAGACACTAATTCATGTCTCATCCCCTATGGGCATGGTGCTCTAGCTCTTTCCCTGAGCAAATTGATAAATATCTTGGGGGCAGAATTCAACTCAACTAGAGGTGAACATAAAGGCACCTCGCTTGCTTTATGTGTAgtgtttctggttttatttttctatttttctacaatgTCTCTTGCTGTATGCATGCAGTTTCAGAGAATAAT--ATTGCATAAAATATGTGGTCATCTAAACGCAGCATGGCTAGGCAT-TGATAGCTAGCATTTAAAGTGTGCTTTTCAAATTTCAGCTGAGACCTCCTTATACATAACTAGT-TTAAAGA-----TTTTGACTTAAATAATAGGTTGCTatgatgtgaaaaaataaatcagaatacaAA-AATTACAGCTCTATGTTTAATTTaaagtacaataaa-aaataatcaggTTTTAGATGATGAAGGTAGTAGTTCTTCAAATTTGTCTGTGGACTCCTATTTCGTACAGATACACTAGAGGCATAGCGAGGTAAAGTAATGCCTTAAA--------------TTGTCTTACAAAGTTTGTGGCAGCTCCAGGATGGAACAAAGGCCCTCTGCCTCTCAGGTGACGGGTTCTTTCCATTATATCATGCTCTGCTGTGATGATCTGACAGAGATATTCAAGCACAGGCACAATGACTGTCAGTCAACCTGAACATAATCCACTAAGTTATGCTAATTCCCATAAAAACTAAGATGACTCACGGGCGAAGGAATCCCCACTAGGATTCCATTCTTATGAATTTGCCCATTTATGGCAAATTCATCCTGCTCTTTGGaatctttttgttctctttctgctATTCCTATTGTCAGAAACCCAGAAATCTCTAGGATTAAAGGAAGACCAAATGAGGAAAGGTGAAACAGAAATGGaagtggggctttttttttttttttattcctaggAGCTAGTCTTTGATGAGTCTTTCTGTAATAAATCAAACAGGCAAGATTTGAGATGACATGCCTGGCGTTCAGTAAGTCTCACAACCGTGAGTGCTAATGGGAGAAAGGGTCCGTTCTTAAACAGGTCAGAGGAAAGGGAAATTTGCATGTAATACAATTCTGGTAACAAGGGCTTTTCGTAGTCTAAAGCAATTTAGCAAATGCAAGATTATCATGGACTCAATGAGGCTTT-AAATGTaatcaaaatgtgaaaa---aaaatccactattTTGGATAGCCAGTAAAGGTTATTACTAGTA-TTTCCAGTTCAATTTGTTAAAAAAGCTTTGAaatactc----aaaaagataaaaatccttTGTTT---CTTCGGGAAaacttgttctttctctttcttttggga---TAAT-----GAAGG----TGAGTGATCCTGTGGGAAAAAACAGCTATCAAAGAGTCGGCTGGAATGCTTGCCTC----GATGACTTTTGTTTGGTAATGAAAAGGCCAAATTTAGA----AAGGCAGTGAGACAATTTGGGTAATCTCTTGCCAAAAATATATCTCagagctgcttttattttgtgttcagGAGACTAAAGGAG----ATAGGGAAACCTTCGTTTCTCAGACATCCCTCACATTTCTCCAAGGattacttttctttctaaaatgtaaatttcattaCCTTGT

a score=33028
s chr3           149722476 2581 + 160039680 TTCTCCCCATTTTAATCCAGGGCATTCATGGGACCATGTGCTGATCAGGTGCCCTTGAACCCCCAGGTCTTTTTAACATAACGCAAATTTCTAAA-TAATTAAGTCCATCTTCTTTTGTCTATTCACCCTTAT---------TTACCCTGATATATCTCTAC--CTCTCAAGTCTCTGTTCTCGGGCTCACTGGCTCA--CGGAACTCTTTTCCGAGATCCTAACTCATGGCAAAACACAGTTAGCTGCAGTAGAATAATGCTTCTGGAAGCCAGAGA--GTGAGCAGGCTCAGTGCCCCGTGTCTTCTGTCACAGAG---AGTGATAGATTTGCATGTGTTCTCAGA---ACACTACAACTAAGCAGTGTCTTAGTGATACCCTTTGCTTCCTGCTA-CAGACTGGCTAT----CCAACACTACTTCG--AAGACGAAGTATTCATGTCACATAGGAAGGAATTTGAAAGTAGATAAGCATTTCATTCATTAGTCAGAGTTGTGAGAAACAGAGCCTGGCCCTACTTGTTTTCTTTTGGTTATCTTCTG-AGATTTTCTTTTCCTCTGGATGTGTAGGATGAATTACCCCAAGAAGCTTGCTCTAATATCATGACTAT-CAAGGATCAGAAAGCTGGAAGCATCAATCT----TAGAAATGAAACCCACTTGCTGTTGCTAGATACACTAAACTACATGCCATGTCACCTTCTGCAGGGAGCTTCCAGAAACATAGGC-----------CAGAGTGATAT---GGGTGTTTTGTAAATACAAGGTAGTTTTGTTCTGTTGATCATAGGACAAAAAGACACAGGAACTTGAGCTTAAGTTTA-----CAGCTAGCATGTCCCCTGA-AGGGGGTGGGTATATGATAAACAGTTTTAAAGAAGTTG-TTTTACAAATATGAAAAATAATGTCGATCATAATTAT--GCACAAGTAGCAATTTAGATTTCTTTAAAGGTAGCTAAAATTA----CCAGGGCATATATTATTCATAAAGCAATGATCAGTTCTGATTTGTTTGCA-TATTATAATAATAATAATTGTTTTTGTTATCATCATCTCgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtCACACATACCAGAGTGCCTCTGACTTTgtcacagagcaaccgtggagctggttcttctcatccatctttatttgggtttcatggattgaactcatgtttccttgggcttgcccagaaagtgcttgcctggtgaaccatctcgaggtccctgCTTTTGTCTTTATGACAGAAGTAATAGAACATTTGCtaaataaatttttctaaaaaaattaattaCTGTCCTTCTCTTAAAACAGAAGAAAGGTCTTTGTAAGATGAAAGCTACTAATTTCAAGGATGTAAAATGTCCAGTCAATTAATTTTCAAACATTT-ACATTTTCTGCTTACTTACACCAAGAGAAGGGATCTAGAAAGTCTAACCCAGACT---GAAGATTTCTTTCTATATCCACCCCCATTCAAACATGAGGtctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacCCCTTTGACTCTGGGAAGGCAAGCCCATTTCTTGCTTCCTACAGAGACAAGTCTTAGAGTAGTTGCG---CACAGCTGGAAAGAACCAGACCTTCACTGTTTCTTAAGTAGTCTTTCCTCAGAAGAGGTTGCCTCTTGGCTTAAAACATTGGCAATTTGGCCCTTTGCATTTTTTGTTTTTTTTTTTACATTTGGTTCAGGAATGAAGGATAGAAAGGCAAAACCCAATAGGCTATATTATGTCTTTGTCCTAAGAAA-CTATCATTATAATCATATATTACACTTACAAAA---------ATCTCCCTCAAAAATATCTTCCAAAGGAGA------AAGTTAACACATCTTATATAAGACATGTTGAAA--TGTCTACATTTTTCTCAAGGAAACTTTAACTAAATTACTCTTA----GGTAAA-TACTAG---TGTGTGAATATAAAATTTATAGAATTGAccttccgtttaagtctgttgtgccctcagtgac-----tgcgagttaaagaacattgcaaaagcaaagatgga-gactttcaaagtgagatcttgaaagctcatgtgatctctgattagttttcctgggacacagcccgtggggaaagccatctgtcctgtaagaactttacctatctagaggttgccaggaggaagagtca-catga-ggcactctggccagccttgagaaccagccacacag-tgagacatcTGGAT---------------AACTC----AAGAGCTGATGGCTTCCATGGCGGCCTTAGGGAGTTCAGGTGAGAACTTTCAGGCCAGCTCCCTTCCCAGTGCCCGATCAGTGATATCTCAAGACTCTGTGCAAATGCCTGTCTTCAGTGGCTACCCCTGGGGTAATTACTTTAATCTCATGCAAGGACACCATTA--AGAAACTCAGTTATTTGAGATTACCTTTTATAAGAAAG-----TTGT-GATGAAGACTGTTCCAAATATAGATCCTTACTAA---ACACCGGCTACTTACA-GGACTTCAATCATGACTTCATTTAGCTTATGATTTCAGGGGAGAGAGATCTGGAGGTAA-TATTTCTCTTCTGGGTGCACAGTTAAATTCTGGAG
s HiC_scaffold_1 136332886 2360 + 233722169 TTGTCCCCAACCTGATTCCATATATACAGTAGGTTATGGGTTGACTGTGTGCATTTGAAActcc-----tttttaa-ataaagaaaatttcaaaggtaCTTGTAACCAACTT------TCTTCTGATCCTTATGGTTTATTTTCACTCCAGTATGGCTCTGAGACATTTGAATCTTGAAGTTCTTCCTTAATGACTGATCCTAATAACTTTTCTAATGTACATTGTACCGGGAGAAATAGTTTAATTCTAGGAGAGTAACCCTC---AGAGACAGATAATGTGATAAGCTCCAGTGTCCAAAAACTTTTATTCCcaagcaaataaatataattgtttttgctttgagaTGTAC-CTAAAACATAGTGTTAACATTTGGATATTTTCTGCTTCATGTaaacataatatttattattctaaaagcactttataaaaaaaaagtgtttatctCATAT--GAAGGAGTTCAACAATAGACAACTATTCTTTTGGTTATTCTAAGATGTCAAAGACCAAGATTATTCCC---TGCTTTTTCCTTATCGTATTCTGGATGTTGGCTTTTCATCTTGACCTGATTGATTTATTATTC-AAGAAACTCCTTCAAATATGACTGCTTTGCAAAG--CAGAAAGCTAGAACCATTTGtctgtactaaaaataaaatctgtttattGTTTCCAGTTAGATTAATAAGCA-ACAACACCAACATCCACTGGCACCTTCCAGAAGTATAGACATAACCCTTAACAGACAGACATATGGAGTGCTTTATAGATTTAATatatttccatggtggttgttatag--caaaacaagacaggaatCTGAGCT---GTTTAAACACCAGCTAGCATGGGGCCTTACAGACAGTAGGTCTatgataaatatgtttatactaGCTAATTTTACAAACATTAATGATACTGTTGACTGTAATTATATGGACAAGT-GtgatttaaattttacaaaaagaagcTAAAATTAATTATCAGGGTAGATGAT-TTTATGAAACAATGCCTACTTATGAACCACGTGTGCTATcatgacaaaaataat----------ataaaaacttcG--------------------------------------------------ATA-------------AAATTTGCTACAAA-------------------------------TTCAAT--GGTCTC----------------TTTCCTTTGGTT----------------------------------------ATTCTCATGTTTTTGAGATAAAAGTCAGATGCCACC---------AGTTCTAATGCAGAAATTAAT------------------------------------------------------------------AAAGTGTTCAGTGaattagttttcaaatatttgaaacttTCTCTCCACTGACTTTAAAGGGAAGTTTGTGGAGATAATAACCTAAAGTAgagaaaatttcatttaattttt--ccctgTGCAAATAGGATACCTCACTTTACTTCTT----------------------------------------------------CCCCTTTACTCTAGGAAGgcaagtttgtttttttcttcctgcagAGACAAGACTTAAAGTAATTGCTGTTCACAGCTTGAAAGAACAAGACCTTCACTACTTCTCAAGTTTTCCTTCCCT---AGAGGTAGCCTCTTGCTTTAATAAATTGAAGCTTTAACcc-----------taatgattttttaaaatttggttcaAGGGTAAAGGGTAGAAGAGGAAAACCCAACAGGCTATATTAGTTCTTTGGTATAAGAAATTTGTCACTGTAATTATATATTACACTAATGAAATTTATTCTGGTTCCCACCAACAAAATCATGTAAAAGAGATCACACTAAATAAATCACAGCATACAACAGCTGTAgaactttttttgcatttttcattaagAAAGTTTAAAGTAATAACATTTACAATGATAAACTGTCAGGCATTTTCAAATCAAAATGTGAGTTCAGTGACCCCTCACTT-GGTCTGAACTGGCTTTAGTGATTTGGATGTAGCTCAGAAAATGCTACAAAAGTGACAGTGGATAAATTTCAAAGTGAGAGCAGGAAAGATCATGTAACCTCCTGCTTGTTCTCTTGGGGTAC-TCACTCTGGGAGAGACAGCTGCTTGGTGTGAAGTGTAACCATCTAGCGACTACCAGGTCAATGTGTGGTCATGAGGGCATTCTGGCCAGCACTGAT-ACCAGGAACACAGATGAACCATCTGGAGCTTCCAATGTGTGCAGACTCAACAAAGAGCTCATGCCCTCCACCAGTCCAGGAAGGACCTCAGGAGGAAACTGCGTAGCTAATTCCTTTCTGAATTTTTGAC---TAATACTGTAGGAGTTCATTCAAATACATGTTTCAGATTCCTAGTTTGAGAGTTATTTGTTCCAT----------GACATCATCATTAGAAATTTTGTTTGTTAAAATCA-GTTTTACAAGAAGGACACATTATAGAACAAGTTTGTCTAAAATAC--ATCCCTTTCAACGTAGAAAAACAATTCACaggggatttatttat--ttacttttcatttatgtGTTCAGGACAGAGAAATCTGTGACTAACTACCTGACTTTTGGGTGTACAGTTAAATTTCAGGG

a score=26754
s chr3           149728815 748 + 160039680 TAATTTCCCTGGTGGTTAGACTTATTTATTTGAAATTATAATTGA---TATTAATGTATTAGAAACAAGATTAAGGTAGGAAAAAAGCA-ATGGTTGGGTGGAAACCAATAG-AATCTGTATACTATGACTAACGCTTGTCTCACATTGCTCAATGCCCCATATTAACAAAGAGAAAAAAGTTGCATGACTTTGGGAGAAACAGAAAGGAAGCGTACATTAAAAATATAATTTCCAAAGTCTTTGTGAAATGTTAAATGTCACAGATTCAAGATTATTTAAATTTACACAGAG--CTGCTTAGAGGAGATCAACTAGGTAAAAACTGTGATGTTTGTCATGTCTAATTCCCGTAATTAAGTGCTGCTCG--TTCGACTTGAAAAGGCCTCTGTGGGATTATATTAATGGCATAATGGAGAGTCAAAGAAAAAAATCAAAACTATTATGAAGAAGAGGGTTGTTGAAAAATACATGAGCTGGAGCCTTTAGGAAAGGAGAGCGTCAGTATGCTAAATGT---TGGGATTACGGGAATGGCCTGCAGCCTTTTGTCC--AGGACAGGGCACCCCCTCCACTCCTAAAATCTATACACATATGAGACAGAGTCTCAACATAAAGATGACAG-------------------------GACCGCAAGATCACTCTTTAATATTTTCTTCTTAGAAAAGGTTATTTCCTCTACGGAAAGAAAAGAAATGTATTTA-------TCAGTTCATTTTAAAAATAATAATTG-TTAGCTTTTGTTAAA----AGGGACTTTTGagagag
s HiC_scaffold_1 136337469 782 + 233722169 tgatttttctgttatttat-tttgtctctttaaagtaaaatttaaaaatattaataaatgagaaagaagttTAAGACAGGAAGTAAGGATACTGTTAGGAGATGACTAAGGTTAATATTCACAGTGTGACTTCTATTT-TATCACCTTACTTGATGGATcatattaacaaagaaaaaaatg--gctttACTATGGGAGAAATTCAAagtaagaatacatttaaca-atgATTTCAGAATTCTCTGTGAAAAGTTAAATGTCACAGAATCAAGATTATTCAAATTTACACAGAGAACTACTTAGAgaagatcaactagataaaaaccGTGATGTTTGTCATTTCTAATTCCAGTAATTAAGTGCTGCTCTCCTTCTACTTGAAAAGGCCTCTCTGGGATTATATTAATGGCATAATggagagtcaaagaaaaaaatcaaaagtgttATGAAAAAGAATGACTTTGAAAAATTTATGAGCTGGAACCTTTAGCAAAGGAGAGAGT--GTACGGTGGAAGTGACCAGGATTGCTGGAATAGTGTGTGGCCTTTGTTCATGAGGACATGCCATCTCCAATATTCCT-AAACCTGTACGTGCGTTAGAAACAGGCTTGTAATGAAGACTAGAGCTGAATACCTTAATAGAAGTCTTTCCATCACAATCccactgtttaa-atttttcatatataaaaaatcCTTTCTC--------ATAATaaaacctttttcatttttacttatttttttcttcagataaTGAATGCTTGATTTCTATTATAAGTGAGGTATTTTTGAAGAAG

a score=65859
s chr3           149731077 2018 + 160039680 AAAGATATTATGTGTGACTATTGTTACAGGTATTTAAGACATATCTCTCTTGCCCACCCTGAATATTTT-------------AAAAAGAAACTAGAAATATGAATTATAGTATGAAATAATAAATATATGTATATACTTGAACTTTCGTGTAAGCATGCCTTGTGTCTGTGGCTTTT--CAGCACTGTATTTCTTTCCTAACAAAGGCCGAATCGTT-CAATCACTCCCCACTCAGTTGCTGTCATGTAAAAGTCTGCAGTCCTTCACCACTCCACATGGTATTTTCTATTCTTATTCTTCAGCAAGTTGTAATACAG--AACTCAGTC-----CTTCTATAAGCGCATGCGTATCAAGACAGAT--GTGCACAACAGAGACATTCTTGTGGTAATGTATGTTGGTTAACACAGAATGCTTACAAAATTTGCCTACCTTTTTGTTTTAAGTTACATTTTAATTGGGCCATATATAGCATAGACGATAATGACACATGTACTGTCTACTTGAGTAATAATTCAAGGTACATCATTTAATTTTATTGGTTTTATTGATACTGCTACAGTTTGTGATTTCCCCACAGCTGTTTTTATTCCATGAAAATCATCCTTCCCGTGAGCCTGACTGTAGCTCTAAGCATTTTGTAATAAATGGTTATGATCATTAAACACATGTAGTTAAAGACTTCTTTGCATTCATTTCCTTGTTCTTAGttttaatttttcattatctttattaattttatatatcaaatataattttaaGCCCCCAAATTAACAGGAAACATATGTTCTGC----------CTGTCTTTGCACAGCTCTGCCTCACACGGGGTGAATCTCTTCTCCATACAGTCTTCCAGGCAATACTTTGGCTCCTGTCCTGCCTATGTGGCTGATGGCCGACCATTTCTGTCATCAGCGACAGTCCTTGGTGGTTTTCCATCCTACTGCTACGTCAG---GTTTTCTATTCTCCCAAACTACATTCCAGTTTCCTCACCTCACCAGC-CTCTAAGTAGCTCTCCACACCACATGTCCCTGCTGTCCTCTATA---GATGTCTGTGATTGTGACAAGATGTTCGCTTTTGC-ATCAGTGCAGGCT-------GTTCATTCATTATTCAC-GCAGCCACAGGCACTTCTTAAGGGCTTGCTCATTGTGGCATCGTGGCGGGGCTCTAAG-------------AAGTGGCAAAGCT----ATTTTCAGGAACCTAAGGTCCTGACTTCTG-GATGGGAGACTATGCTTCCGAGGAACCCTAATCAC-------TGGTTTCATTTTACAAAATTTCAAACCACAAGTAAAATTTCTTGTGGAGTACATT----ATTAAATCTACCTTCCTC-----AAATTACCAAAT-GATAAAAAAGGGGGGGGGTGGTTAGGCGGGGACAGAAGGCTTGC-----CATGGTGAGAGACAGAGACTCGT-GAACTTCAGATCAAGGCTACTAGTAAT---TCTGTAACCATCTGTGAGGGAACTCTGGTGATTACTTTTATGTGGAACATT---------------GTCAGTTCTTCACAAATAATGAAAGCAATAATCAAATCTGTGCAGTCAATAAAACATCATGGTTTATATTGGGTTTGTGTAGCAATTTAAGAAACTTAGGTCTCAGCTTTCCCTGCTGCCCAGCTGTGGAGCAGAGTAATACTCAAGAGTTTTTCTAAAAGCTTGCACAGTATTTTGCACCGAGAGTCTCACAAGACAGCATTTTTGAGGCAATTACTGAAGAATCTGGATGCTAAGAACTCGAAAGGTGCATAGACTCAGCCATAAATAAACAAAG-ATAAAACTTAAACTAAACAAC----CCTACGAGTAACAGCA---GGAGCTCCCCTTCCGATTTCCTGAAAGAGGGGTAATGGTCCCCTTTTTTTTGAATCAATTTTCCTCTATCAATATAAAAATCTACTT-------TGTAGTCCACACACAGTGACCCTAGA--TCCCATGATCCACGCACACAAAGCTAGAATTTA-------GAATAATGTCACTCAGCAT----ATAAAACTTCTACTTGCATTGTTTCTTGAAATAATCCAGATAGGAAGATGCTCGTGCTATATTTAAttttttattgaaaatatatta
s HiC_scaffold_1 136338949 2082 + 233722169 aaaatttttatatataattattcttgaagaaaataaaaatgtatacattttgtaTATGTTGGAgaattctcccccccccccccaagaaccTCTAGTAATAGTGGTAACAATATGTTCTAAGA----TGTTCACTTTTTCAAACTTTGCTAAAGAGCTCTCTTGTGCCTATGGCCTTTGTCACCACAGGCTTTCAGTCCTGACAATCTTCGATCCATTTCAGGTAGTCTTGAGGCAGGTACTCTTACTTAAAA-CCTGCAGTCCTTCACCTATCAACGTgacattttctattcttattcttATGCAAGTTTTAACCCAGCAGATGCAGTCAGATATTTTTGTAAGTGTAGACTTATCATGACATGCCAATGCTTTATAAA-ACCTTCCCGATATAGGTTATGTAGGCTGATATAGAATGTGTACAGAATTAGCCTACCtttttatttataagtaaattttaattGAGCCAGATATGGCATAAAAGATAACTGCACATGTATTATCTACTTGCATAATAATTCAAGGTACATATTctaattttattggttttattgataCTGTTACAGTTTGTGATTTCCCCAcagctgtttttatttcatgaaaatcaTTCATCCCAGGAGCAAGACTATAGCTCTaagcattttataataaattgtTATGATCATTAAACACATGTAGTTAAAGACTTCTTTGCATCCATTTCCTTgttctctgttttaatttttcatcatctttattaattttatatatgaaatataattttaaacccCCAGATTAACAAGCCACATATGCTCTGCGCACTGAGAGCTGTCTGTGTGCAGTGTTCCCATACGCAGTGCGCGGCTCTTCCCCACACAGACTTCCTGGCAGTGCTTTGGCTCTCTTCCTGGTTGTGTTGCTGATTGCCTCCCATTCCTGCCATAGATTGTGGTCCTTGGTGATTTTCCATCCTCCTGCTACATCTTCTCCTCTTCTAGTCTCCCGAACAACATTCCAATTACGTCTCCTCCACAGCTCTCCTGATCATCCCTCACCTC----GCTCCTGCTGTCTTCTCAGTGTAATGACTGTGATTGTCACAAGATGCTCACTTGCACTGTTGGCACTGAttagtattcattcattcattattctCTGGATCCACAAACATCTCCTTCGGGCTTACTCGTTATGAAGATGGTGCTAGGGGCTGAGGTTACAAACATGAGGGTGGTACAGTCCCTGCTTCCCAGGATCTTAGAGTTTTGTGTCCTTCGAGGAGAGATTTCAAAATTAGAAGATCTCCCCCACCCAGTAAtggttttctgtttaaaattttcaaacctCAAGCAAAATTTGCTTTGGAAAATATCTACAATGAgatctatttttctttccagaatttactaaagagataa----------------------------agaagacttGCTGTAGTACAGTGAGTAGAAGAATTTCACAAAACTTCATTTCAAGGCTACTGACTACTGATCTATGAACTCCTGCTAGTGAATACTAGGTATTACTTTCACATTGCACATTATGGctctgaaaaaaatcacttctccataaataaagaaaatagtgaTCAA-----CGTTTTCAGCCATAAACTGCAGTTTATGT----------TAGTAATTTGAAAAA-TTAGTCCCTGGCTTTACCTGACATCAGACTGTAAATGTGtataacattt-tgattttttctaaaaGCTTACACAATGTCTTGTGCTCAGTGTCCCATAAGACAACATTTCTGAGGCAATTACACAAGAATCTGGACCCTAGGAACTATAAAGGTGTGTAGACTCAAACCaatgtaaacaaaatataaagccTAGACTAAACAACAAAATCCACAAACAATAATCATTGCAATTCTGCTTTGAATTTCCAGAAGGGGGAGT-----TCTCCCTTCTCCTGAATCAATTTAcccttataaaaataaacatcgaTTTCATAGACTGTATTTTATATACAGCAATCCCAGAGTTCCTATAAAGTA--CACACAAAGTCAGTATTGAGTCAGAGGAACAATGTCACTCAACATCTGAATAAGATTCCtacttataattttttt---aaaaggccagacGGGAAAATT---------TATTTACGatattaatgaagaaatttta

a score=30576
s chr3           149743591 1061 + 160039680 ATAGCCATCAGAATGGTTCTCAGAACCTCATCTGTGGTATTTCCTAGGCTGACTGTCACCATAA-ATTAATCTCCTCACACTTGGAAATCCTGCCAACTTAATCACATGCTGGAAGATACACATGGCCCAGGTATGCTTCTTCTTCACTTCACACATCTATAAACCTGATTCCTCACACTTAGATTAAAAAAAAAAGATATGATTCAAACTAAATTAAGAAAATGAGCTTTTATACCTTCTCTTCAGAATTGCTGTAAGTGACTCAAAAAAGAGAGTTCTCTGCTTTCCTTC-----AGGAAGATTATATTGTTGCCTTTCTCTATTTGACAGTT-------------------TCACTTACTGTATCTTTATACAACTTTAAAATGGCTGATCAGCAGCTGGATTGTTGCTGCTGTGCTAGTAAGATTACACACTGTCACACAGTCCCTGAGAAAGCTTGGGAACCACAGACGCAAAGGGAGTCTTGCTTTCTTGCTGCCTTTTGCTCTTCTATAAACAGCTGTAAATGATACCAGAACTAGTGTGAGCTTGGGCAACATTTTTTTATTCAAATTGAATTTACTCTTCTATAATTTGACCTGGGAAAGAACAATAATGATGGAAATTCTACCTAGACAGATGAATTCAGGGATCCCGAGAAAACA-AACAGGGAAGAGAAGCTAATGACTCTTTACCATGTGATTC----------AATCTTTGGAGAGGCCACAGTTCTGGTGGAAGAAGGCATGGGTAGTCTGTTAATGACACAGAGCCTTTGAAAATGAATTCTTCTTGACTACTAAGCTGTTTGGGACACACCGGTTTTAT-GGCCTTTTTTGTTACGAATAGTTTCTAACATACTGTATTCTATTGATAAACTACACA-TTTTTCACCACATTAATTTTAAATTTAAAATGAACTTCTACTAACTGCAGTCATTCATCTAAGTTTCAAGCATCAGAGTAGCCTTTG-TTTTTTTCTATTGCCTGTATAAATAGCTAATACAGAAGCTGG-------------AGACTTAAAGCAACCAAATATTGATAGTTCATATTA-ATGTACAGTAACTTATTCCTTTAATTATT--------CAACCATTCA
s HiC_scaffold_1 136352842 1098 + 233722169 ATGACAATTAACAGGACCCTCAAAAt-tcatgtata--aatatttatgttgGACATCATTGTAAGATCAGACTCCTCACAGCTGGAAATACTACCAACGTGACTGAGTGTGTAAAATTACACATGGCCTGTGTGTATTTCAGATTCACTTCACACACTTACAAATCTGATTCTTCCTATTTG---TTGAGAGAATAAATCCAATTcgaattaaaaggagaaaatgaacttTTGTGCCTCTCCCTTAGATGAACTGCAAGTGACACAGAGAAAGtaaattccttttttactttttcagaaaaaaaaaatggtttttcaTTTCCATCTTGAACTGCTTTATTCTAAGCTGATCAAATTACTTACCATAGCTTAGtctaaattggaaat---taattagCACCTGGATCATTCCTTCTGCGCCAGTAAAACAATTCTCCATAAAATA--CCTTGTTAAATCACGAAAGCCACACATCCAATGGGAAGCTTTGTTGCCTGCTA-CTTTTGCTGGCCTATGAGCAACTCCAAATAATCCTGCAAATAGGAAGAAGGTGGCCAACA-TTTTTCACTCACATTGAATTTACTCTTCTGTAATTTAGTCTGAAAA-----ACTAGTGATAGAAATTCTACAGAGA-AGATTCATTCACAGGTCAAACAATAACAGAATGGGAAAGAGAAGCTAATGAATCTGTACCATGTGAGGTGAAGCACAGAAGGTCCTGGAGAATCCATAAGCTTAGT-GAGAAAAGCATGAGCAGATTATTAATGACACAAGGGCTGTGCAGTTGAATTTATCTTGTATACTCAGCTGTTTGGAGAGCACATCATTTATAAGACATTCTTGTTATTAATATTTTCCATCCCATTCCACTC--TTGACCAACTATATACTTTTTTAccacattaattttaaatttaaaataaatttctggtaACTGCATTTACTTATCTGATGCTCAACCATTAGGGTACCCTCTGATTTTCTTCTCTGGCCTATCTCAATATCCAAG--GGAATCTGGTTTTGGGTATTGTAAATTTAAAGTCATCAAATGGCTGTTGTTCACATTAGAAAGATGATAACTCCTTCTTTTCATCATTCGGTCCAACAATCATTCA

a score=22340
s chr3           149749656 3028 + 160039680 agaagCTG-CAGACAGTGGACTTACCTCAATTCAACAAC--TAGCTACTGGTAATTTAAAACTCACAGGAGTCTTGAGGGACATTTTATTTTCTGAAAAGACTTGAGTTCCTGTTTCT----AAATATCATATTTTTATTGAATGCCAAA-TAGTAAAGTATTATGATTCAGAAGTGCTACTTAAATCATAAATAAATTTATCTTCAAACAAACTCTTCCCCAAGTCCAATCAGCTCCTAGCTTAATCTCACTTTCACTAAGACTCAAGTCCATTAGGCACAGAGAAGAA-----AGACCACCCCACTAATGTTTCCCTGGGTTTTTTTTTTCTGAGAATATCCTATCTCTGCAAAGGGTATTGGATGCTTCAGATAATTTTCCTAAGTGGCATGTTGTT---GTTGTTTTAATTTTCACATGTTCTCCATTAAGAGGTTTGCTTTATTTGCAAGAGTCATCTATGTGTTTTGCAATGGCTTCTACTTAGCTCCTAAGTACA---AGCTGCACTGAAATATTGATTTAAGTCCATAAAGTCCTG-ATGGTTTGGGTTTTGTCTGCATTTGCCAATTTCACCTTCCAGAAACTGAACTAG-----GAAACTTCACTCTGTCCTCTGTGTGTACAT-CATGTGTCAGTCATTTATCTTTCTCTCGTCTTCAGATCTATTGACCTGCATATCTTA--AACACAAGGA---------------Agagacataaagcttgtgtaattttctagtctctcttaaaaacaagcatgcaattac-----aaaagcacataaaatttgagaagtgaatttgagaaaggaatcatagaaactatacattgttcagaatcacttacagtatcactaaatataaattgaaaa--cttttaaatttatcctttgtctgcaacattattgttatatattgtat-tacat-tttttagacatttg-atgcatactc--------------ctgtcatgtagttatatgctattatt-------------------------------------------------cttataatt------------------tcatagactggtaaaacaata---------------------------------------ttttctcaga-------------caaatattatttcaggcattttgttttggagaattttggaaaatatatctcagct-----tcttatcattaatactactaaatgtattttttaagattattgtcaaatttggaaaaatattccccaagattgtttcatatatgagcactaaaacacgagggacttt-----gacctt------ccatgagtgcttacttttTTTAGGACCGGTCATC--CTGAGGGGTGTTTACTGCTGATGGTATTCATCCTGGTGTTGTCTGATCTCGAACTCTCTAGTGTCAGTCATTTCTGATAGGTGTGAACTTGGTGATTTCTGCAATACATTCATGTGTGAATTGTTGCCTCAAAGCTGAAAAAGCTGTGTGTGTGaagggggatagggtaggtattggcttgcaactccaggagtcatggtccatcctggctgtggaggagtaacagccacaatggtaaatttgggtctcattgcatctacaatccacattcaaagaggaaagagctgcagttcctggactcagcccactttctgttatattcatattgggcccacaatgcatctactggtactgctcacatttaagatagatcttttcacctcctgtcactcaatgtagataatcccatataaccatgtccagatatttcattttcatggtgatttctaagctcatcaagttaaagtcaaggctaaccaacacaATGCAGAAATGACAATCAAACCTAAATCTGAGATTCCATAATTTTCTTTACCTTCTGCAAGTCTCAGTCACATCCGAGTGAGAG---AACATGAAGTG--------------AAATGTGACTAAGAGGGCTATGGGGAGGTGGGGCAAGGAAATGACATATATAGGCAATCATGAGCAAGAGAAGATATTGACATGCTTTTACAAATGAAACTGTGTAGCTATGTGAACACCTTGCTGAGTCCTA-TGCAAAGATCTTTGAACAGCAAGATGGAA-----AGTTGGCCTGT---ACACCACTACTGAC--------AAAGTAGTTGTGGTCAGAAAGCCATTTAAATAAATCCCTTCACCGTTGTTTCAAGTCTGAGTTTAGGTTCCAGCTA-----------TGTAGACCTGGACA----ATTCCACATCTGATTCAGTTTATAAAACTCAGATCTTAGTGGTTGTCTGAGAAATAAAAATTTGTACATTCATTGTGACTTGACTATCTTGTAAGTCCTAGTGGGGGAAAACATCTGTAAAGGAAAAATAG--AATCAAAAG--------------ATACATTCTTCTGCTTTTTCTTAAAGGAGAATTCCAGAATTCCTAAGAACAGGATTGGCAGGGATT-------------AGATGACATTTGAGGAGACCAAGCCTGGATAGGAATG-----TCTTGGTCTAAAGTTTATGAGCAGCTCAGAAGCTTGTGACAATC-ATTGGATATCAGGTTCTCCTGGGTGTTTTGAGAGTACGGTAACCCCAAAAATCACAAGACTTCAAGTA-GATATGAAATCTGAGCAAGCTCTCCATACTCATGCCTAGAGGAAGAGCTCATGAAAGGACCAGGGGTTATCAGAGACTCGCCCAACAGACCACATAA----TCTCAGAAGTAAAAAAATTCTCAGGAGGAATTAAGCAGAGGGAATCCATAGCTAGAAATCACTATAAGTCGAGAAACTTCAGTTAATTAAGTAAAGAAAATCCAAATGGTATTATCTACATTGATTGATGCAAAAGGTAACAGTGGTCGTGACAATCACAAAACACAGCAACATAAACAACA-AGAAGGTTAGGTCTTCCTGGTTAGACTG-GGAAATGGTCTTTTTCTA--------TAAGTATGTACAAATAGACATACAACCACACAGCACATAGACATATTCTAAACAAGGATCAGCAACAACAGTTACTTCAGAAAGCCTGCTGTATTTGGTATTGAAGTTAAGTGTGCAGACAGGAAAACTACTAAACA--AATATTGAAGCCATGGGCTGTTCAATA-GTCTTTTCCCATTCAGACTATAGATGAATCTCCTCTCCCTGCTTTTGAGAGTCAGGAGGGAGGTACTCCCACCCAAATCCAACCAGCAAGGAAGTTGAGAAACCAC----AAGATAGCAGTCACATTCTCCCCAAAAGGTGTAAGCGGCTGTCCTAC
s HiC_scaffold_1 136358689 2880 + 233722169 AGAAGCTGACGGACAATGAAGTCACCTTGTTTAAATACCCATACCCAGTGATAATGCAGAAAATGTAACAacccttaaaaaaat-------------aaacttcaaattcttatttttttaaaaaaatgagacttTTATTGAATGTCAAAATAGTATAGTGTTCAGCCTGAAAAAGTTTTGCTAACTCACACAT----TTACTGTCAGACAAAGAC--CTCTAAATCCAAATGGTTCCTAAATCCATCTCTGTTTTGTTAGGACGTAAATTCAAT---TACAGAAAATAGTAGCTAAACCATCCTGCTAATGTGTCTCAAGGTTTTGCTT-------------------CTAAAAAGAGGGTTGGCTTCTTCAGATAATTTTCTTAAATGGGATGTTGTTCTTGCTGTCTTAATTTTCACAACTACTCCATTAAGAGGTTTGCTTTATTTATGGGAGGCCTCTGTGTGTTTCACACT-GCTCCTAGTCAGCTTCTAAGTGCACATGGTTGGAGAGAAATATTGATTTTAATTCATAAAGCCCTGTATGGTTTAGGTGCTCTCTGTACTTGCTAGTTTTACTTACTACAAGCTGAAGTGGATACAAAAAAGTTCCTCACTcttatgtatctatctatatatgt-----atctatctatctatcatctttgTATCTTTATATCTATTTCTCCAAGGGACAGAAGCAGATTCAGGCTTTTTGAGAGACCAAAAACACATGCAGTTTGTAAGGTTTTTT--AGAGTAAATGTATAATTATgataaaaatgttcattaaatt----------------gaaaga---tataaaaatcataaat--tttaaagcCAGTT-CAATTACataaaatggagacagaaaagctttcttaatttataaattatttgaaacaaTTGCATTATACATTTTACAGACATGTTTTTCAACATTCATTTGCATATTCTCTGAtcacctgtttttttgtttgtttattttgttttgtttgtttggtactgggggcTGAACTCAGAACCCgcacttaccagacaggcacttacagtgagctaaatccccaactgaTCACCCATTTGCAAGAAAATATTCGGTACTATTATTTTCGTTAGAATAACAATTCTCATCTTTTCTCAGATAATTCAGTCTTCTAAGTGTTTTTTGAAATGCTTTATTATTCATGATTTTAG--CACACTTTTCAGCTTCATATCTTATTACTAGTACtatgaaaca---tttttagaaatattagcaaatttaagaaaacatttttcaatattctttcataGATGAGCTGTAAAATGTGAGAGCATTTCAAGAGCCCTTGTTCAGTAACTAATGCTGAATATTCTTTGGAGCAAACAGTAACCTATAGCCATCTACTGCCGATGTCACACACA-----GTTATCTGCCTTCTGACCATGTGGGATCAGTCAC---------------ACTCCGTG---------------------------------------------------------------------AGGGTCAGTACAAGGTGGCAG----AAGTGTCAT-------------------------AAAACC----------ATTTTGGTGT-----------CAATACGCAT-------------GGCATCAATTCCTGAAC------------------TACACATA----------AAAGTACCTGT--GAATCActga-atttaaattaaat-tcagaACTTCACTTCAGTTGATGCGACCACCCTCACATTG--AAGCACAGA---TTCA-------GGCTACTTCAGACCTTGATAAGTC----------CTAA------------------Gactatttaatttcaaattaaaataacct--ctttttaaaaattctgtgtat-tCTGTC---TCCAAGAAAGAAAGCAACATATAATGCTTGAGGCTGTGACAATTTTAGCTAAGTGAGCTTTGGAAAGGT---------ATTTGCCacacttttgt-----------------gttttttggaCACTTCCACAAACACACTAGAATAACT---TCAATA------TAATTCATACTGTAAGAAAGTATGAATTAAGTGGTAGAACTCCTAGTGGATCAGCtaaaactcactactgcctggcATCTAAAATAGGCAAGG---AAAGGCCCTT--------TCCCAT--CCATTGGAATCATCCCGAATACA-GTGCCATCTAAATGTAACATGTGTATTCCAAGGTACAACATGCTAtcctttattaattttgt----ttcagttttcattGCTGGATGAAAGCAAGAAAATTTGCATAGTCAATATGAATTTCTCATTTCCTGCCTTATAtttg----------ctgaaaaagaaaatttgcaagCCAAAGGGTGGGGGGAGTTTAATACTtcaatctgtttttcttcaaatgacaATGTTAG-ATTCTCAAGATCAAAATAAGCAAGAATTTCCAGAGTATGTCAGATGCCAGCTGGCAAG----AGTCAGAAGAGAAGTGAAAACTCACAGTCCTGTGTTTAC-AACAGCGCAGAGAGATGCCACAGTCAAGAGGACTCCAGGCTGCATGGAGTG-GTGAAGGGACCTGTAGCCTCCCTAGCAGCAAGGCcagaaaaatgacatgaaaattg------------ACATCAGTAACCAGAGCAGGA--TCATGGTGGAGCCCGGGGGTCTCTAAGCACTGCTC------TTATACAAAAGTgttctaaagaaaagaaagttacagCAGAAA--AAGCACAAG-----------------------TAAGCACAGACTCTT-GGTTaatgcaacaacaacaa--aaaatg-------------tgtgTATGGTAGAGGTTCGTGCTGGCAGCGTCAATCACAAAGTACA-------AGAGAACGCAGAATCTCAGATTTTTCTGATTAGGCTGAGAAAATTGTCTCTTGCTAAGCAACCCCATGCATATACAAAT----ATCCAAACCCACAGAGAACAGACAAATGATGAACAAGGAAGAGCAGCACCAGTTAC-TCAGAAAGGCTGCAACGCTTGAAACTGAATTTAAGTGTTCAGAGGGGAAAATAATGGAAAGATAATATTTAAGTTATAGGATGTGACATATGTTCCTTCCAGTTCCTTCCCT-GAGGCATTTCCCTGTCCT--TTTCAGATGAGAAGGAGGAAGTGCTGGCTGACAAATCCAACCAGAACAGAAGCTAGGACAACACTCAGAAGAGAG-----ATCTGCTCACCAGAAAG-GGAGACTGATGTCTTAC

a score=60439
s chr3           149757674 2927 + 160039680 AACATTTTGGAAACTACATGTAATAAGAAAGG-----TTCATTTGTAGAGTGGATACGAGCAATTCCTGCATGTTTTATGAATAGAAATTCTTGAAAAAGCATTGCTAAAAACCAAAGGAGTTTCTTTCCATACAAAACAGTAGAACTTTCTCTGAGGGCGTTGTCGGGTACGCACGTGATAGTTTTGGACTCGGTGGGAACCTAGCTGGGGAGGCATACCCAGCTGGTGAAGTTGTCTGCATCTTTGTCTCTCTGGAGGAAATTGCCATTCTGATCACAAACAATGTTTTCTTTAAGTTAAACATTTCGTTCTCTTGGGTGTTTGTTGCTAATGGAGACAGAAATACCACGTTCATCTGGATTTAATATATTTCACACACATCTC-GTCAAGTGCACTATTTTCTCAGCAGAAGTAGGATTTTAACAGTTTTTTGTGACTTTTGACACATCATCACTTAGGAAG--CCTTCCTTTCAGGGACTGAGAAGGG-CCTGGTGCAAAAGCTGGCTTTGTCTTGTTCGCAAATGGATAAACAGATGTCACTTGTAGATTTTTCTGAACAAAACCCAAATGACATCATACGAAGGAACCACCACA---CAGTTTCTCCT-CTTCCTGACTGTGCTGACTGACTGTGCTATCATTGACTTGACCACACAGCAGAATGATCCCATGACCTGTTCACTCTGTGCCTGGCCATAAATAAAGACACTTAAAACATTTTTGGA-AAATGTTCTCCTTATAGTGCTCAG-GCCA----AGGAGTTCAAGCATCCC---------------CCACCCCCA---CCCAGGCCTGGGGTTTACTCTTGTGAATTGTAGTGAATGAACTCACATCCTAGGAATGGTGAGTG----AATCCCTCATAACTGACAGAACGGTGATTTAAGGCTGTTGTTGGCTTCATTGTTCAAAGTCCATGTGCAACATAGTAAAA-----ACCTCACTTATTGAGACAGGCAACTC--------TGTGTGGG---GTTTCACTCCACATGA------------AGTCCAGAGCAGAAAATGTACTATGACTGACTTTTTAAAAATGTATTTACCTAAATGATGG----------------------TGTGAAGATT------------------AAATCCCATAGGAGAGAAGGAAACATATCTCATGTATTTAGAATGTGATCAGCAAATGTCATTCACCACCATTACACTGAAAGAAAAGAGTGGCTTGATGTTTAATAACGGCAGCAGAACAATAATTGAATCTATTGTCCTAATCCAAAGCACATGTTTAAACTATCTGTGGAAGTA-------TCAGTTCACACTGCAGGTTCTTCAGATGATGCTCTTCCGGCTGCTACTTTGTGCTC---ATTGTTTCCTTAGTCTATGTCAACTATCCTGACTACTTCA-GAACTCAAAGCATTTGGCTGGAATCAGTCAACTGTGCC-TCTCTGCACTGGGTGG---------------------GTCCATG--GGT-----------------TGGCTAAACTACAGATGGCTCCATTTTCGTTCTCATTGCATCCTTGTGAAAACAGAGG-------------------TGATGATCGGGGAGAATGGGCTCTAGAAAAGGTAAGGAGACATTTTGTTATTGCTCAGGTCCTATTTCAATACCCACATGTTTTTTTTTAAAGTTATCCTTTGTTGATTGAAGAAGGGTATGGTTATCAGAAATTCCAGTAGG-AGACCCTGCTGCCACATTAGCATTTGATATTTGATAGTCTCATGGCACAT--GCTTTCAGATCATT---TTAGCAACTGTCCATTTTCACACTGTCATTT-AGGATTGCAATACAGCAGGTCACTGACAACTACCAGGTCAGGATTTAAATCAGGATGTGAGTTTAAATCTCACGACGGCCAGAAAGAGAAAACAAAAAAAGGAGTGAGAGATGAAAATTGAAGCACATGACAGGATGTCTGCTCTTCTCCAGTTT-TCATCTACTTCATGGAGAAGAATATTTTTAATATTTTGAAGTGTCCTGATC-ATGCAATTACAGAATAGTAGGTATAGAGTAATAATGATGTAATGATTATTTTTAAATCTCTGAATATTTCTTGGTGTCTTGTGTATGTCTGTGACTGCCTCTGCCTTGGGTCTTTTGCCCAAGATGTCTTTGAAGTGCTTATCAGTTCA--AGGGTGAAGACAGAGGAAGGAGTTCC--------------------TAGGTAATTGGTCAGGAAGTTGCATGCAT---AGTACCATGGTTAATTTCTTGCCCTAGGC----AAGAGTAGACTATTCCATCTCTTG-ATTAATTTCTGTTACTTGGCCTAGGATGCAAAGTTATTCTGGAAAATTTGCACGTATCTATTTAAACGTTTTCTGCCATTTAGCAAGTTCTAACAATCCCGGAAATAATATAGAAACTTTGAGGAGAAATTTCA--------TAAAGATATA-----------------CCAAATATTCTAGATCAAAGTAATAAACGAACATG-------CAACATACAAATGCATTTTTTATC--TCAGT--TTAATGTGGATGGTGGGACAGTGGGAAAGAAAGGAGTTCAGG-GGGACTTGGGTTTGATTT---GATTCAACATGA---------GTTTCTCATCTTAGAAGAGATGCCAAGGTACCATAGAGCTTGTCCTGTCTCCATTCAGCCAAC-----CAGA------TTCACAAGAATTAGTTATGGACTTTTCTTCATCTCCTTGTAGAGATCATGCCTATGGCTGCCTCTGCAAGGAAGGCTGGCGAATCC--TCTCTCTTCTTTGAAAATGATGAAGAAGTTTTAAGAGAACATTAGCCATGACTCTGAGGG--------------CTTTGGACCTAAATGTTCCTTT---GTGCTCTTCTTTCCTCTTCTTCTGCATAGTGGTGGGCTTCATGTGTACTTGGCTTGCTTCCTGAGGGTACTATTTACATGGATGTCAATTCTTCTCAGGATGATGGACCTCTCTCAGGACATATGT----------ACTGTTTTAATGTATTAGTGCAGCATTTCAATcacacacacacacacacacacacacacacacactcacacacacacTCAATTTCTCCAATTCGGAAAATAGGCTTTTGTTAAATACAGGAAGCTACAGGGATTAAATGATTGTTGCAGAG
s HiC_scaffold_1 136363622 3011 + 233722169 AGCATTTCAGAAACTACCTGTAATGAAAAATGGAACATTAATTTGCAGGTTTGCAGCCAACAATTCCTGCAAATTTTATGAATAACAATTCTTGAAAGAACATtgctaaaaaaaagaagatattcttTCCAGACAAAACTGTGAAACC--CTCTGAAGTCATCTCCTTGTACACATGTAATGATTGGAGGGACAGTGGGAACTAAAATTTTGAGACATATCCAGGTGGTATAATTGTCTGCATTTTGGCGCCTCTGGAGGAAATTGCCATTCTGAtcacaaataattttttctttaagttaaacatttcattctcttgagtgttTGTTGCTAATGGAGACAGAAATACCACTCTCATCTGGATTTAATACATTTCACACACATTTCCATCAAGTGAACTATTTTCTCAGTAGAAGTAGAATTTTAACAGTTTTTTGTGACTTTTCACACATCATCACTTACAAAAGCCCTTCCTTAAGGGGACTATGCAGAGACCTGGTATAATATTTGGCTTTGTCTTGTTCAGAAATGGATAAGCAGATGTCATTTGCAGATTTTCATGAGCAAAGTTCAAGTGTCATTGTGCAAGGGAACTGTCACAGTGaagtttctcttgttttcttcctgtg----tTGACCATGTTATCTTAGACATGAATGCTC---------gctcccccacctcctggcttTCTGCCAAACTATAAATGTGTCTAC-----ATATTTTTGGACAACTGTGTCCTTCACAATGCACAGCGCCATTTGGAGAGGATTAGAATGCCGTGAGTAGTGCTAAACTACCCCCAAATCTCCACCCTGGGATTTGTTTATCTGGGTTTTAATACATGAAATCACTTTACAGGAATGATGAGGGTAATAATGGGTGGTAAATTAAAGTACAATGATTTGAA---AGTGTAGGCTTTA-TATTGAAAATCAATGTG--acatagaaaaaagaagataTGGTCCTTGGAGTGAGATGATTTGGGTTTAGTATATGTGTACATTTTATCCTGCACTGGCTTCAGTAGCTGGTTCTGAACAGGGGCCTTAAATTCAGTGaccttct---attttttttacatACATAATGGGGTTGGGGGAGAAGGCAAATGCTGTTaaagtttattataaaatattgtaaaaagcTCTCTGGAGAAAAGCA-------CTCTGTCATTTAGTAGATGACTGGAAAATAtccattgcttttattattttgaaagaagatagttgcttgatattttaaaatat--gaaagaaaatatttccatttaatttataaatttaaattatgt-----aaC--TCCGAGGAAATATTCATATTCACTAATCACTGCAGatt-ttaacatggcattgtttGGGGTCATAATTTGCACATTGAACTAGTATTTGAGTCCCTGCCAATCATCCTAAAAATTATATGATCCAAAAGTATTTG--TGCCAGCATTGGGCTGTGATGTATCTATATTGGGCAGGAAATAGAGGAATAAGCCAGTGTACACGATGGTAGAATTTTGCCTGGTAAGGGCTGAACTAGAATTTTCTACACTTCTGGTCTCAGTTCATCAGGGTCAGAACAATGAATGTAACACTAACCCCCATCTATGGTTGAGAAAAATACGGATCTGAGAGGCCAAGAAAGTTGCACGTTATCACacagatcctgtttcaaaatccAGATAATTTTCT---AAATTAGCCTTTGTTCACAGGAGCAAGCTCTATTTA-CAAAGCTTTCAGTAAGCAAATTGTTCTGGAGGATTAGCATTTTCTATCTCTTAGTGCCATGGTTTATTcgatttagaaatattttgttaaaaattgttCATATT-ACCCTATCATTTCAGAGTTGTAATAAGTGAGATGGTTATTAGGTACTAGCCCAAGA-TTAGATTAGTGTTACAGCCCAACTCCTAGGAC--tctgagagaaaa----------------atagaagaaaaacaaagcatatggcttatttttcacttttctaaattttattgcCTGTTTTACGGAGAAGAATTTCTTTAATATTGTGAGCTCTTTTGAGCTATAGAATTGTAGAATACTAACGATGGTGTGATGATG------TGATTATTTT--------------------------------------------------------------------------------AAGTACTTA-CATCTTATTGGGGTGGAAACA---GAAGGAGTTCCATTGAGAGAAGTCACTTGTTTATATCATCAGCAAGGAAGTAGCATGCATGTAAATAATGCTGCTAATTTCTTGTCCAAGGCTACTCATACAACACTATTCTGTCTCTTTCATTAAGTTCTGTTACTCGGTCAATAATGCAAAGACTTTAAGGCAATTGAAGACAAATCTGTGGCAGCATTTTTTTCAACTCAGCAAGCTCTGATAAtccttgaaagaaaatagaaaatctgaTCAGAAATTTAAAAGGTCTTTGGAGATATATCTTTCACTGTATTAATTCGAATGTTCCAGATCAAATAAATCAAAACACATAAGGATTCAAATATAATgatccatttcttttcatttactagTCAATGTAGATGGCAAAATAGCAAAGAATGGATTAATTCTGGAAGGACTTGTGTGCATATCAGGGATTCAAGATAAAGGCAGTTCAGTCCTCCTCAACACAGAGCTTCATGGTCACCAAAGATCTCATTTCCTCCTGGATCAGTCAGCACTAGCAGGTCATGCTTGGCAA-----AGCTTGGAAGTTCAGTTTATCACCTTCT--CACTCAGTCCCACTGTCATATTTGCAAGGGTGACTGGAAGACACAGTCTGTTTTCCCAAAGGATGAGGAAACAGCTTTAGAAAAATACTTATTATATTTctacaggatttaaaaaaacatatttggACCAGAATATTTTTTGTAAATGattgtatttgtttttc--ctgAATATTAGTGGGTCTCATTTATGTGTATGTTTCTTT------------TGTGCATGAGTACAGACTTTTTTCAGGATAATGTACTTCTCTTCATAGGtatgttgtatttctgtttgTCTTAATACGTGGATACAGCACTTCTATC-TATATAC----------------------------------------TTCTTCCAGTTTGGAAAATAGGCTTTTGTTAAAAGCAGGAAGCTACAGGGATTAAGTGATTGTTAAATAG

a score=9760
s chr3           149761421 448 + 160039680 ATAAAATTGTCCTTTGAGC-TGTAGAGAGCAAACTGGGCACCGT--ACGACTGTTGTTTCCTCTTAAATTACAAGAGA-TTTGTTCCCAAGTTACTAATGAGACCATTTCA---------------TTTGGATTGATTGAAACCATATGAGAATTCAAATCTATTCAAG-TAATAGAATTTACCAGGAATATAGAGAGAAGGGTAGTTTTGCCCATATTTCTAGAAGAAATAGCTTTCAGAATTGAATTGCTTGCTCTGCTATGAAGTATCATCATCCTAA-------AGAAGACATAGTCCAGTCAACCATACTGACTAAGTGCTGGAGCATCAA-----TACCCAAAGGCATGCTTGGTACCCATAAGGATCCTTATAGATACCTTGCTCCTGAAGCTTGATAGGAAGGAACTGTTAAAGCCACTATTACAGAAAGGTTTGTCGAATTTATAGTAATCATATCCTTTCATTGAGCCCT
s HiC_scaffold_1 136367502 463 + 233722169 ATAAAAATATCCCTGGACCCTAAAGAAACAGGATTGGACACCACTGAGAGCCCTTGTTAACTTTTAACCTATAAGAAAGTTCATTCCCAAGTCATTAAAGAGTCCACTACAATTCCAAGTTTATCTTTTGGATTTATCGAAACCATATGTGAATTCAAATCTATTCAAGCTAATGAAATTTaccagcagcagaggaggaagaatattttctctaatgcTT-TGGGACAAATGTTTTTCAGAACTGAATTACGGGCTTCACTATGTAGTACCCTCCTTCCCATAACATGCAAAAGCAGGACTCTGTATAGCATA------AAGT--TGGAGCACCACCGTTTTAGTGAAGTAGGTGATTAGTGTAAATAAACAGCATTACTGATAACTGGGATATGTTATATAATTGAAGGAGGTTGCAAAATTCAATCTTGCAGAAAGATTTAAGGTCCT--------TCCTATTCTTCCACTGACTCTT

a score=53067
s chr3           149764621 2638 + 160039680 AAAACACACGAGATAAATTTTTGTGCTTATTCT--------TAAGCTACAAGCCATACAAGCAAACAAACAAAACCCCATTTAATTCATAAATAAATCACCATAAGAGACTCATAGGAA---GTGGAGC--------AGCAGAAATA-----TCAGCC---------CCACTCAGGGTGTGTGGGAAAGG----GTTAAGAAAGCGTCAAGGCTTGAGGGAAAAGATATCTTCACTGAA-AACATTCTGGCCCCAGAGCAGACTAATTACTGGGAATGTGCTCTACCACTTAGTTCTTTTTGTTTTGGGCCCATTTGGTAATGCCCAG----TTTTCTGTGGTTACCACAGGATTATATTTCAGGATCCTCGGCATCTCCCTC--TTTCTTGCATGTGGGCACATCAAAAGCCAATGC--------ACTAGCAAGT-ACCCAGTGTGTATCACACACGAATGATGAACTCATTCTTCACATTTTAATAATTAACATTTATATACTTGGAGTTTTTGGCGTACATTACTCTTTTGAAGAATGGAAGAAGTGCAAGAAAAAGGTTTGTTCAAGTTGCCAGTAGCCTACAGAAACTTCAAGGCTCTTAGCAGAACAAAATTTCTAAAAGCAGTGCTAAGGAAAGATTTCCTCTCCTGCTGATAATAAATACA--------------------------GCACAAAATCACGCAGTTTTAGCAAAAAATAGATAATTTTTTTAAACTCATGAAACTTATTGACTGTCAATTTT--GATACTTAAGTCCATTACAAGCGTAGGATTATAAAGGATTAATGAGCTTTAAACAAAATAGGAAAAGTAGATATGTACCACAACCATTTGCTATAGCTAGAGAGTGGGAAAAATATTCTCTATTGGGAAAAATATTCTCTACATTTTCCCCAACCTTTGCATAGTATCCATTGATTCTGTTGAAAATATGGTTTGAAGAAAGCAGTCAAGCAT-------ACTGAAAC--ATTTGCAATTGTTCCGTTTTC-----ATATTCAATCTCTCATAGGGCGTTGTAGCGCATCATGGAGAGCTAGTAATAGAAGA-CCCTCATTTGGCAGTGTGCTGAAATGTCATGCAAGTCAAGAGTAAATCTGAGTTAGGGCACATGGCAAACCCAAATAGATGAT-GACT-------ACTGCTGCAAGACACACTT----TTATTACTTAAACAATTATCCATGCTCTTCCATTCCCCAAAATGCAATCTTT-GGTTGACTGAATAATTT-CTATTGCAATTTGCCTAAGTAGAACTAAATTAAACCCCAGAATGCTAATGACAGTAGAGGTAGAGAATTAAAATTTAGGAAAAGATTACAATTCATACTTAAAATTTACGTATGCAAATTTTTTACTTAATTTCTTGGAA------CATAAATTAGTATAGATCTCTAC-ATTTTATAGGAAAAAAATCCATTGGAAGAGG-TACGTTGAATTAAATAATAATGTCTTCACATTGCCTGGTTTCAGCAGTGCAGAATGATATTTTAGT------------------------TCCCATATATTTCTCTG----TGTTTTAATTTGTAAGTATATGCTGAGCAGAAGAGAAAAATTGGCAGCAGATAAATAGA------------------------------------TAAACACA----------------------GCATGGTG-----------------------TTCCTATGTGTTCTCAAAAAATGAACTAAAGCACCTAGTTTTATGTATGTAGAGATCTATTCAGTGATTATGAGAAGAACACATTTAGGATACTTAAATTCTAG-------------------------TTTAAGAGATCTGAGGGGAAGGTTCATTCAAGGACATGATT---GGACTGGCTGTGCATATTCTCTAGGAAGAAGCACAAAGCCATCCCGGAAAATTTTGGATACTGGAAATTCCTCATTGTTTTTGTGTTTTCTAGATATGTTGGTTGAGGAATGTTAAACACTTTTTACTCATTCC-CTTTTCCATTAGTCTGTGCAATCAGGAATAAAGA-TTGAGTTCTTTTCTATATTAACCAGAGGAGTATAGACTAAAAGCTAATATATCTTTTTTTATGGCTCAGGTTGGACCATTGGGTGAGGCAGGGAAGAAATCAAATACTTCTGTACAGACTAATTGGGGTCCATTGACTCACAGAGCAGACAGGCTCCTTGCTAATTGG---GGGAAAATGTTTTCCCTTTCTAGGTATGGATTTAGATCACAGTTGAAAAACC--TTAACATCTATCCTTGACAGACTTGCTTACTTTAGTAGTTCCATTGTTAAAGGAAGGAACTTAGCAGAATCACCTTGGTAAGATTCTTTCTCAGGAAATACTAATTGTAAGCTTCCCTTTCTTTATGTGTGA-------------GGTC------------TAACTTTGACAGCAAATAATGGCAGATTTCATTTTTATTTG-----------ACAAATCTGATAAGA-TGCTTAAGTTTATAAG-ATCTCACATGGAA----TGGTGTGTGTGGATTAGTATCA---------------------GTTCCTACAACATGGC---AGTGTTTTATATATGTGTAAAGA--------GTCAGATGGCCTAAATAATCATTTACATAGGCACTATTACTATATCCTTCTTAGAAATTACAAAAAAGAACATGGTTAAAATACATTAAA--------AAATGCCTACTGCATGAC--AGCCAGGATATTCACCGAAGTGACTATAAGCT---GCCCTTGTTTTTAATG-TTAGTATGTATGTACAATTATGAAGGAATTA-----TTATAATTGTGATGATAATTATATTAATaatgatgacattgctatttattgaacacttcctgtgtacagacattttattaaatcatttggatatgttaatttattttatttttatatttac
s HiC_scaffold_1 136369381 2845 + 233722169 AAGACATATAAAATAAGATTTAGTGCATACCCTCCCCTTTATGAgcaaca---caaaaaagcaaaaggacaa---TTTATTTAATCCATGTTTAAATCTGTGTAAAGGATGTATGGGAAAATGTAGAACTAAACTTAGGCAGCAACAAACCTTAAGCCATGCTTTCATTGCTCagagaatgaagaaaaggaagagttAAGAAAA----AAGACTTGCC--AAATCTTATTTTGCATGAATAAAGTTAGATCCCTAAGGCAGAATGGTT--TGGAGATGCGCTccatggttttatattttttgctttggACCAATCTGGGAATCATTAGATAGTTGTCAGTGGTTaccatataaa-acattttatgagGCTTAATAGCTCTTTCACTTTCAAAGGTATAAATGAATCAAAAGCTAAGAACCGTGGTGACTCACAAGTGACTCACTCTGCATCACACACAGATGATGACATAATTGTTAAAATTCTCACACTTAACATTGGTCCACACACACATATAGgttaatcattttaatttgattaaagAAACAATTGCAAGAAAGGAATCAATCTGTTGTACAAATAGTTTACAGGGA-----------------------AATATGTAATAACAGT--------CAGATTT-------TTCTGACAATATATACACATAAGATTCAGCTATTGTAAGGGTTGTATGAAACTAGATGGtctaagcaaaaaataaataattttt----aattatggaACTTCTTGACTACCATGTTTTAGATATTAAAATTCATTACAAGTACAAGATTACAAAGGATTTATGGTCTGCAAAGAAAATAGCCAAATTGGACATATGCTCACTGTGTGTGACACAATTAG------------------------gggaaaaatattcacaaatttcAGCCTACTCTTTGCATGTTATTTGCTGGTGTTATTGAGAATATGCTATCACAAAA-TATTCTGCCATTGGTGTAGATGAAACTAATATGAACGTGGTCTATTTCCTTGTTACATTCAACCATTTGCATTGTGTTGCAGGGTACCATAGAGAGCCACTAATAGAAGAGTCTTCAATTGGCAGTGAGCTTAGATGACATT----GTAAGATTAAAT--GAGTTCCAACACCTGGTAAATCTAAGTAGACTATAGACTGTAAAGCACCCCTCCAAGGTATACTTAAAactaagaacaaaaaaat--------------aattccCCCAAATGAATTTTTTTGGGTGACTGAATCACTAACCATTGCAATTAGCTtaagcaaaatgaaattaaacttaaaaattttaatgttgatAGAGgtgaaaag---agatttaaaaaga-attaaaattcatCTTTAGTGTTTACCTATGCAAAATGTT-AGTTGATTTCTTAAAAACATATCATACATTAGTATAGCTTTCAGCCATCTTATCA-AAAAGATTCCATTGGGAGTGACTAGAATCAACTGAGAAGTAAGATTTTCAAATTGTATT-TACAAACATAGCAAGGTTTTTTTTAGGtcaattctctctctgtctttccctctcctctATCTTTCTCTCACTCTGCTTGAAATTACAAGAACATTTCTTGCAGAAAACTTAAACTGGTATTAGAAAACTAGAATACAATAtcttactttttgttgttgtactgggaatcaaattcaagacTTTGTACTTACCAGGTGggcactgtggcactgagctacatcccctgccctctttatgtattcttaaaaa--gaacaaaagtactTTGTATTGTGGTTTGAAAAATCTTGTCA-------TAAAAAGACCACATTTAGGAAATCTTGATTCTAGGAAATCTTGATTCTAGCCTAAGTCATTTAGAAGTGCTTATGGTAAAtttcactcaagtacaaaattaATGGATAGGACATTGATGATTTATAGGAAGCAGGGCAAAGTCATCCTTGGACGTTTCAAATATCTGAGGTTTCTCACTGTTTATGCATTTTATAGATATGCTG-TGGGGAAAAGGTAATGTCTCCATACCCATTTCTCCTTTTCATCGGTGGAAGCAATTTGGTATAAAGAAGTGAGCTCCCTTTTATATTAACCAGGATAGCATGCATTAAAAGCTAATATATCTCTTTT-ATGACTCAGGTAAGCCCatggggtggggcagggaagaAATCAAATGCTTCTTCACACACTAATTGGGGTCCATTGACTCAAGGAGCAGACAGGCTGCTTGCTAATtggaaaaaggaaatgttttcccTTCATTAGTATGGATTTAGATTATGGCTGAAAGATAAGTCAACATTCATTCTTGATAGATGTTCTTTCTTTAACAGCTCCATTTATTAAGGAAGGGGGAGACCAGAGGAACACTGGTATGAATGTGAGTCAGCAAACAGTAACtgtatactttattttctttatctataggACATATGCTTATGGTCAAACTTTGACCATAACTTTGACATTGAGTAGTGATGGAGATCATAACCATTTGAGGAGGATATCATAAATCAGAGGAGGTTACTTGAATGTACATGTCTTTGACCTGAGACAATCGATGTATGcagataataatcataatacaGTTAAGCATGTACTGTGCTTATTACatgacaaaaatatttcaagcatTTGTTTAAATCAATCCCTTTAATCTTCACAGGTATGCAATTACACAGGTAACATTATTATAGTCATTTTATGGAT-----AAAGAAATATGTTAGAGGTAGGTTAAATAAATTTCAGATGGCCACAGCGTGGCAAAACTAGAATGTCCACTCAAGCAGTTCACAGCCAGAGCCTGTGCTTCTTATGCTTTGTA---Atgcaaaa----aatagaataacagagcTGCAGTTGTGATGGTGGTGATACTA---------ACAGTGTTATatattaaacattcactgtgtccATGCTTT-------GCCCTGGTGATACGTCAATGTATTCGGTCTTCATAATAAC

a score=61669
s chr3           149767345 2202 + 160039680 AAGTAATTTTAAATAAAATTTTCTAATGAAACCAACTTCTAAAATCAAC---TATCAATGAGTATAACCTTACAGGAATATTTTACATATATAAATAAAGTATTCCATTGTA-ACAACTT--ATATAACTAAATAGTTATAGTCTGTTGTGCTCTGATATTATGTCACCGAGATAAAATATATCTTAGGGTGAGCAGTATGGAGCCTA---AGTAATTCTAAAATTATTTTGCTCAGATAATATTT-GGCATTGAAGTAAAGAGGCTAATGATAACAAGTGCTAACAAGTCCTTAAGCAAATACCATTTCTCTAGCCAGATTCT--------CATGACTATGTTGAGATGACTCTAAGCTCAGTTCTCTTACATTGCATGCTTGGAGATTTTTATTCAAAATAATTTGAATTGGGTACTTAGAAATGAATACAAATTGTCTTATTAAGGAAAATGGCTAGCTTGTTTTATTCTTCTGAAATTTAAGCCTGACACAGAAAGTACTAAAAGTCTACCCTGAAC---------------AGCAAATGTACTTCAGAGCAAGTGTTATTGACAGAATCTACATC---TTCTCAGTGCATTCAAGAGA--CAATGGTTCTTTCCCTCATTCATTTCCATTCCCACTCAACTACACTTCAAGCCATACAAATATGTGTGTGTGAAAGATCAAGTGTTAGAATCTGTGATTTTTTTCCAACAGTACATGACTATTAGGGAGCAAAAACACCCTTGTAGTTGCTGGGGATACAATGACGGATTTCGAGCCAGGAATCAATTAAACTAAGGAAACTGTTGCAGATCTTTGTTTTCTGGGAAGAGAACAGGTGTTTAATAATTTACATAAATTATGCAAAATCTAAAGCATTTACAGTAACTAGACACTTAGCAACAGACATGAGTGAGGAAGT-AATTGGCTGCTCATGTTCTGTA-CATAGCCTTGCCTGCTCATGTTGCTGCTGTTAGGAGGATTTTTGTCAGCATCTCCATTATTATCACTATTTTTCATAGTCTTATCTTTTAAGCCTAAATTCCACCTCAG------ATGGTTTTCAAAATTTCCTAGTAGTTATACTCACTGCCTACTGAAAGATCTTTTTCTCTAGGTAT---TTTGTATGCATGAAAAATACTTTGAATTATATTTAACACATTGAAAC-AGGTAGTAATGGAACTTGAATTTAAATGCTTTTGTGTAGCCAAAACTTAGAAATTCCTCCAACTAAAGAATGTGC-TTAAAAGATCATTTAAAATCTGCAAGATAAATTGGAATGTTTTCATAGTATTAAGTGAACTGTGTGGAGGCTTCATTTAGAGACACAAATATGATATCTGGAAGAGTAAAAACTTGATGGTTGTAATCAATAAACA---------------TTTTCTTATTGTATTTGGAGAGTTTTCTATGTCTTT-TACCATATGCTAAGTTTAGCAGGGAATAAAAAGACTAGAACTGAGTATCTGCCTAAAATAAGCAGCCATTCTAGTTGGGAAATAAAAC--------ACAGGCACTTGTAACAATAAATAAAAATGACAGCTG--TGTGTATCCACATCGTCTGTCGATGTGGTAATAGAATGCTGAATTATTTGTCATGCTAAAATGCTCTATCTTTAGACAGGTTTTTTGGTGCTAAAATTACTCTTTTCAAGTAATTAACTAATATATGAACTTTTAAATTGCAACATTACAGTTAATTAATATATGCTCCTGAA-TCTTGCAAATATAT-----TGGAACCTTACAGACCTGGGTACATAAGT----TCTTAAGAATAAAGCATTTTGATTTTTGTATGATATACAAGATATTT-ATAATTCCTTCAGCATTATATGCTTGGGATGAACACCTTAAACATGTCTTCTGTGTCTTGAAATTTTAAACTCATTTTtggcaaaataaa--ccctaaataaattcaacccaccttgct----------tgttagtagaactaattcagtttatcagtggagagaagtctataaccatggtgacgagtcttctttcaaacctataggaacgaaccacacaaa---agttaatgt----agttagccattgccaagtgcttcccaaagccttttactgcc------------------------tcagcctcaccatctccttcctgctc--tccaatataactatttTTTGTTTCTTTTATTACTGAAAAAAAACCAAAAATAAATATTCAGAAAATTAGTA--TTAGCCATTATATCAAATTAGTTTAGCCATTTCTTAACT----TAAGCAATATTCAACAC-ATTATGTGAATGAACAACACTTGTAA
s HiC_scaffold_1 136374832 2225 + 233722169 aaataatttttaacatgcCTCTTTGAGCGAAACAATTTCCAA--TCAAACTGTGTTAAGGAAAACAATTTTGTGGAAagaatatgcatatataaataatacattacaTTTTTTACTGGTTCAATGTAACTAAGTTATTTTAG---GCTAAACTGTACTAGATTTTCACCCAGTGATGAGTCATTTTAA----AGCACTTTGCAGAATGTGTAGTAATTCCAATGTTAGTTTGATCTGGGGATTTTTTGGCATTTGAGCTAAAACAGTAGCAATAATAATTCGTGATATCTCAC-AAGAAAGTGCTGCTTCTCTAAAAGGTTTCATGGtactacacaatttttttttctgtaccttaAACATTGTTCTCTTGAACTagttatttggaaatatttga-agaaataattttaattcgGTACTTAGAAATGATTATGGGCTGCTACATTAAAAAAGA-------CCAGATTTCTgcttctttactttaaaattgacattgaaagtataaaattagtgcacaaaaagaaaagaaagaaatgagcagGAGTGCTTTACAGTAAGTATTACTGATAATGCACACATTCTGTTCTAAATGCATTCAGGAGAAACGGtggtattttcatttattcatttacatgcCCATTCAGCCGCACATAAAGCCATACAGATATATGTGTCTGAAAGATCAATTCTTAACATCTGTG---TTTTTCCTACAGTATCTGACCATTAGGGAGCTACAACTCCCTTGCAGTTGCTGGGGAAACAATGACAGAACTCAAGCCAGGAATCAATTAAACTAAGGAGGCTGTTCCATATCTTTGTTTTCTGGGAAGAGAACAGGTGTTTAATAATTTACATAAATTATGCAAAATCTAAAGCATTTACAGTAACTAGACACTTAGCAACAGACATGAATGAAGAGGTAAATTGGCTGATGATGTTTGGTATTATAGCGGCGCCTACTAGCTCTCCCATTGCT----GTAGATCTGTCAGCATTTCCATTAGAAACACTACTTTTCTGGGATTTATACTTCAATACTAAATTCTGCTTtagtcttttatttgttttaaga--cCATAGCAGATGTGGCCATAGGCCAGTAAAGTATCTTATTTATAAGATATATATTTGGGTATGTGAAAAATAATtggaattatatttaatttattgaaaCAAGATAGT-----------AATTTATACTAATCTGTTTagataatacaaagaaatttCTCTAAATGAAGAATATGTGTTAGTGGATCATTTAAAATCCACACTATGAATTTAAATTCCTGTGTAATATTC--TGAATTGTGCTGAGACTTCA-----GGACAGAAATATGGTAACTGAAAGAGTAAAG--TTGGTCATTTTAATCAATAAAGATATTTGAgtgtattttttgctttttat-tttaaagaattttccatgtgtttctgttGCATGCTAAATTCAgtggagaataaaaagaataaaactcagTAT----CTAAGATAAAAAGTCACTCTAGTtgggaaataaaacaataaaatacagacATCTCtaacaataaatgaaaatgacagCTGTATATGTAACTACATCTCATGCTGACACAGCAATAGAGTTGTGCATTGTTTGTCAG--TAAAATGTTTCACCTCT--GTAGCTTTTTTCCTTGTAAAA-----ACTTTCAATTAGTTGTttagtatatgaaattttaaagatca--gtcACA--CAACTAATACATGAGGCTGAATTCTTGC---TATACCTGGGTGAATCCTAAAAGTCCC---TACACAAGTAAGGTGTTGGGAATATGACA-CTTGTTTCTTACATGATACCcaagagatttaaaaattcttttaacatTATATGTTTGAGACAAG----TTAAATATATCACCTATGTCCTGGAAATTTAAACTCa--tttgacaaaacaaaacacttagaTAAATTCAACTC-CATGGCTCTCCTACCTATACCAGTGGAACTA---------AACATTAGAGGAAACAC----ACCATAA------------TTTTAAATGCATGACTATGAACCTCAGGAAGATACTTAATGTGCTCATTCATTCATCACACTGTGCTTCCCAAGGATCTTTAGTTTCACAGTCTGATGACGATTCTCCTTTTCAGTCTTAATACCTCCTCCCTCATCGTCCCTTTAAAGATATGGCTTCCTTTttttatc-----aagaaaatta-----aagcattcaGGCAATAATTAACACACCCACCACAGCCAACT--TCTGACTGTTTCTGCACTCCCACACTCACTTTTCTACATGATTTTCTAAATGAATAACA-TTGTAA

a score=139737
s chr3           149783617 5079 + 160039680 [encoded data, 5441 characters]
s HiC_scaffold_1 136384766 4928 + 233722169 [encoded data, 5441 characters]

a score=14774
s chr3           149794548  865 + 160039680 TTCGTATATGATATTCAACTTTCTCATAATCTCTCA-----------------GTTAACACGTGTAAATAAAAAGGCCCTTGGGGCACCACAACTGGCTTTTAATTACCAGTT-----------GCTTATCAAAGTCCT----------------------------TCAGTAGCTCAAATTGTTATCTTTCTCTACACTTCTTCCCAAAGCCCAAGACAGGTGCATTCCCTGGTATTAGTGCCTACCTCTCAGTTCCCTGCCAATGAAAGTTCTAATTCATGTTCAGGGCCTACACACAGGTGCT---------------CTCACTAATGTTG-AATCTTGATGGCCAACTGGGCAGTGAAAGAGCTATCCTCAGATTCCAACTTGTCAGCTGCGTTCTCCCACTGCCTCAAACACAAG----CGGCCCCTTGTTGATTTTTCCAGAAGCAGGTGCTGAGATAGGGCTCAAGGCATGCTTTATAACAAGGGGGCT------------------GCAGCAG-------GTGTGGCAGGGAAAGAAGC------------CTGCCTTGAGCCCCAT--CTCTTG----------TAAGACTCAAATGGCCAGAGTTTCAAAACTCTTGTCTCCTTCTGTAACC--CTAGTGACTGCGGTCCTCAAGCAGGTGTTTCCTT------------CTTGATGGTGAGAGTACTTTGACAAATCAAACAGCAGGAGGGTATTGGTTGTC----CTCACAGT---TGGGAAGGAAGTCCTTCCTTCAAGGAGAATC-TTGCAATGCAGATCTCTGAGTATAGCAGGAGCGCT--AGTCTTCTAAG----TGTCTCTGGCAGAGAATTTCTGCACAATAGAACCTGAGTTCATTTTGCGTTAGCTGATAATGCTGAACTGATACAGGGAAGTCATAAGGCTC----------CTGAAAGTTTTTCTAGTTTAATCTCCG-TGTCAGCATTGGATATAGTCTTTTGTTTCTACTTTAGTCATTGTTATGCTTCTAAGA
s HiC_scaffold_1 136390242 1020 + 233722169 tctggattcaattctcaACTTTCTCTTATCATCTCAACAAAATTGATGAGACAGTCAGTGTATAAAATCCAAAAGAACCTAGGGGC-TCACAACTGGCTTGGAATGACCAGTTCCATTCCCACATCTCATTATAATTTTGTAGAACAGTAATGGTGCTTAGCAGTAGTCAGCACCT--AACAGCTACTGTTTTGCTCAAGTGTTCCCAAAGCCCTACACAGGTGCATTCCTTCAGAACAGTAG-GGCCTCTCATTTCACTGCCAA----AGTTTTATGGTGTGATCAACACCTGTGCCCATGTGCTGTCCATGCATTACCCATCACTACTGATGCAGTCTCCATTGCCAGCTGCGCAGCAAATGATCTAGCCTCAAATTCCAACTTGTCACTTACTTCCTCAGACTGCTTCTAACACCAGATGTCTGTTACATGTTGATTTCTCCAGAAGCAGGTGCTGAGATGAGACTTGATGTATGCGATGCTTTGTGGGGGCTGAAACCTGTGAAGGAAAGGCAACAGTTGCTCTGTTTGGTAGGAAAAGAAGCTGAATGGAAATACAGTTCCAAGACACATGAGTCTAGCGCAAGTACATGAGTCCGAAATGGCCCAGCCTTTAGGAACTCAGCTTCATTCAGTAACCAGCTGTGAACTGTTGCCTCTAAGAAAGCATGACCTTGGGCAATATTGCTCTAAagctgaggctggctttgaagagGTAGTAGCTGGAGGGTGTTGGCTGACAGCTCTTTCTGTGTCTGGGCTGCTGGTCCTTTCCTGAAAAAGAACCATGGGAAAGCACATTTCT-AGGGTCACAAGGGCACTGAAGTCTTCTGAGTTTATGCCTCAGAAGTGGAACTGCTGGATGACAAGATATATGTATCTTTCCATTTAGTCCATAATGCCAACCTTGCCCAGAGTGGTAGTACCACTCACTAGGGTGTATGGGAGTTTTAGTTGTTTTCCCTTCTCTGCTAACATTTGCtgttatctttcattttcattttagctGTTCTGGTAGGTCTATGA

a score=33912
s chr3           149796380 3406 + 160039680 TTCAT-TTACATCGGCTGAACCTAGGACATAATGAGCAAATCAA-ACGTTTATATATATTCTTATTCTCCTGCAATGAAGAAAACAGAATTTGATAAA---------------------CATTATCATACACCTT-------------ACAAGTATGTTTATTTAAGGCCAGATACTTTCTGATCCAGT-------------TTTTTTCCC---------------CAGTATTGATCTTCCAGCTTTTGATCCCCAGAGCTTCACATGTCTAACTAATTAATACAGAATTCTTCATTTTTTCGTTATGTT-----ACAATGTCTCACCCCACCTTTTAAACCTGTTGTTCTTGTATTTTCTTTTAAAACTTT-ATTTTAGAAGTTTCACCAAAAAACAAAGTATTAACTTGGGCTATTAATGAGATTGTATTGGTCCAATGGTCACTAAAATCTTATGTAAGAAGTTTCCATTGCTCTTTTTGTCTAGATAAAATAAAATAACATCTTCATAAA-------TATTTCAGTCCTATGCACTGTATATTACTAAGTAAACTAA-CAACATCATGAATTG-GGGGTTCATGATAAATGTGGGACTTG--------GGAGGAAGTGGTAGCATTTTTCAGATTTATTGTGAGCATGGAGTTTGAGGTCAGAACATTTGGCTGTCACATACATCTCCGGGTATGAACTGTATTCATTCGGTA------------------------------GGACCAGTGTTGAATTCTAAACTCTTGG--GGTAATCATATATAAAGTACAAAATGACAAATGCAATGGATGTGCtataaataaataagtaataaataa-------------aaataaatCCAGTGATTGACAAAGAAATATCCTAGGAGGTGCTATGATGTAAGGCTGTTCTCTGGTGA----ACCATCAATACCTGGGTAGAGA-ACCTTCAAGGCCCTTCAAACAGTT--------CTGAA------------TTTATCACTCGTTAAAAATGTCATTTATGTAACTTACTTGTGGAGTTCTATGTTGAAAATTCTAACCATTTAAATTGTGGAATTTGTCCTTACTTCAGGTACCAAATTCTAGGACAGGGAAAAGTTTGTGAAAGCTACATTTATTACAACAAGTACAAATTTACAAAATGACATGCAATTA--------AAATTCTGTATGCTGAATTTCAAATCACACATTCAGAGAAAACCTATTATGACTGAATTATGAGTATAAAA-ATTTGCAGAGCTTTTAGAAATTTCCCT--CATTTGTTTA-TTTTGTACTATGGGAATTAATTATAAAACCTTATGCTATTAGAACATTAAGGGCAAGCTTTCAAAATCTGTAAGTCAAGAAGTTTCCAGTTATGTTTCCTGGAGCAACTGTAATGAATATCTGTGTGCAAATAATATGCCACAACACTAGCACAATATGCTATTGTGCAAAATAAACAT-AAGGCCAATTTAGGACCCCTGC-----AAGCAACATTGAGTTTTTTAAATTCTAGTATATTTTAAGGTCCTAATTTATAATTTGAA-------AAATAAAATCTTATGGTTTATTTTCATGTATAAATCACTT--TTCATCTTATCTCTATAAA--ATCACGTTTTTA----AGTATCACCTTGGTAGATCTCATACTTTTGAATATTTAAGTAATTATTTGTATATTTA--------------CCTAAAACTAATTTGAGAGAAATAGAAACCACATTTAACATTGCCCATATTGCTAGGAACTTGGGATCGTAATTGATTTGTTCTGCTAGATT---TCTCTCACCCCACTCTTCCTCATTTTAGAATTCAAATTCAACTTACTTCATACTATTTAGTTGAGTCTGTTCCTCACCGATGTTTGACACTGGTCTTAGTAAGAACTAGCAAAATACTGTAGACAAAGTCTCAAATACACATCCTTACTGACCGGCAACACTGAGAACAGACTATAT--GGCCTTTTGATCAATAGAATCATCTTTAGACTCATGCGGCATCTCCAGAAGCCACTGTCCTCAGCTCCTCAGCCAGGAGTGGAGCTCATGAATCCCATCTATCCCATGCCAATCTGTCATCCGGAAGGAGAGGCAATTTCCATTGGAGATGTACTTTGAGCATCTAGCCTTTGCTCACACACTCAGAAGCATACGGACAACACATGTTGGAGGACATGAAGTTGTGGGCTTGGGTCAGAAGGTGTTGGGGTCAGTCAGAAGGTGAAATCAGGTCTGAGAAGAGGGAAGAAAAAGACCTGGGATGAATGTTATCAAAATGCATTGTAAGAAATTCTGAAGTAAATAAAAATATGTTGTTAAAAGTAATCAATTTTACACACTAACACAATTTGTTATCAGCGTTGCAGAATGCAAGTAAGTTTATACA-TGGGGACTCACAGACCAGAACTGTGAGGCTAAAGGACTCATGACATAATCATCCTTTGCTTGAATACATTTCACATTTAGGGGTTTGGTGTGTTTGTTTTGCCTTCTGTGTTTTTTTCCTGGTTATGATATCATTTATC-----TTTTAGACAGGAATGAAATGGCAGCTGGTGACTTACATATGCCTAACTCTTACGCTATTTAGATTCCTCACTGGTTTTGGTTCATTCCTCTGCTTTTGTCAAGCATTTATCGTGCAGTTTCCCCATGCTTATCCGGGGATGATGTTTGTGCTTTTTCTTTGATTTATGTGTTTGATTTTCCTTTGATTTCTCCTTACTGCTCATCTCTCTTGAGCCCAGCTCTATCATCTTGGGACTATGTTTGTCCTTTTCCATCGAATTACACGTTCT--ACCTTTGCTGGCCAACTCGCCTGAGCCCAGATCCACAAATGGCATCTTACTGATGGCCTGCTA--AGAATGGAACCCTTGAGTCTTATCCTGTGCTCCATTCTTA-TATGAAAAtcatctataaacctgagtagg-----acagagcacacaaatatttggtcaaa-attattctaggtacgtgtatggaactatttctttagaagagagtgatatttgtgtcagtagactcatgttaaagcacagtatcttctattacatgggtagttcctacccaaactggttaaatatct------ataaagacttgctgtcccagaagagaaaagaacttggtcatctgactacttttaaattcaaactagaagtct--ctg-agattccagtcagccagtgtaacatgt--agatgttagacttgataggtcttcccaa--------------------tttcatgagtcatctccttaaaataaatctctttatttatgtcctTGTATACTgtaggtcttccatatctgtttgttacacatagg--tggatttaaccatttgtgctcttacttactcagaggagaaaaggggatag-gaaaatcaacagtgtccgt---------taggatcttgtactcacttgcttcattcaaatactctaca----agcaagcacttatattgtatttttattgtgataggcattataaataatatagagatggttta-aatatgtatggaagaa--taggccatatgcaagtactacagagt-ttatat-ggtgactcaagcacacatagata-cagtatccaaggg--aaatagtcaattttccctggat
s HiC_scaffold_1 136392381 3163 + 233722169 TTCATCTTTCATTGGTCAAATTTACTAAATGGCAAGCAATTCAATAATTTTATGCACAT-ATTACTCTCATGCAGAGAGAATCagaaagttttagaaaatatgaatacatttcaTCACACACTTTCACacactttcacacacacacacacacacacacacacacacacccagtcaGTATATAAGCCAGTCCACTTTTTGTCCTTCTTTCCCATTTAACATTTGGACCAGTATCA-----CAATGTCCTAATTACTGGAAATTTTTATGTCTAAGTA-TTAGTATGGTAGTCTTC------CCACCATGTACTTCAagaatgttttgtctt---tttttgatcttttatacttacatttaaaaaaaaacctttcattttggaagtttaa---aggataaaaataatgacTGGGATTTTCATTAAGGCTTTATGGAGTCTATGAT-----------TATAAAAGGAATTATTTGTAGTTCTTCTGTCTGGGGAAAATAAGGGAACATA--CATAAAGTTACCTCATTTAAAACTTAAGTGTAATATGTTAGTAAAAAAATTGGGTAGTGCCTTAAGTTTTGAGATGCACAATGAATGTGGCTCTTATCCTTCTAAGAAAAGACTGAAGAGTTTTT--AATTCATTATGAACACAGTCTTTGATTGCAAAAT-----GCAACCAAACAATTATGTGGGTCAAACCAGTATT-ATTGGGCATATAATCAGATAAGTTTTCCAGGTATTATTGGATCTGAGTCAAATTCTAAAGTCTCGATAAGGCATCTAATAGAAAGTATGAAGTGATAAATTCAAAAGGTTCAGCTCAAAAGGACGAGAGGGAAATAATTTTCTGATATTAAAATCATGGCAGTTCCTA------------TCTAGGAGGAGCCATG--------------TTTGATGAGGAAACCTACAGTA----GGTAAAAATAAGTGGAAGGGATTTCAAGGTATTGCTTGCTACTGAGGAAGCCTTATGGTTTCACACTGAATCAGAGTG------------ATTGTTTCAGGAGTTTTGCGTTTTAAATCCTGGCTCTTTAAACTGGGAAACTTATTCTTATTTCAGGTGACAAAgtctaggaaaggaaaatgt--ataACAGCTGCATTTATTATAATGAATACAAATTTCTAAAAGGATACATAATTagccatttaaaattttgttcactGAATTTCAAATCACACATTCAGAGAAAGCCCATTATAAATGAATTAtgagtttaaaatttttgcaaagctcttttgttttttacttccatttatttatttttttactatggGAATTAATTATAGAACCTTATA--ACTAGAGCATTAAAGGCAAGCTTTCTAAATATGTAAGT-AAAATTTTTCAAGTTATGTTTCCCTCAGTAGTTGTAATGTATCTCTTTATGCAAATAATGAGGCTGA--TTTAATATGATATACCATtgtgcaaaataaatataaaagttgaTTTATAAGCATTGTGCAGGAATCATTGctgcattttaaaagttcttgtgt-ttttaaaaatctgactgaTAATTTGAATCACTGTGCAGGAGATTTTACGGTTTATTTTCAGATATAAATAACCTGATTTAATTTGTCTacttaaaatataacatttttattttaataacaccTAAATTGActtcatgtatttaaaaaatttaatacattatTGAATATTTAGAAAGCTAATTGCTCCCAAAAACAATTTTAGGagaataaagataat-ttttgcACTGGTCACATTGTTAAG--TTTAGGATTACATTTGAGGCATAGCATTTGATCGTACTCCTTACCCC-------------TAAGAATTAAAA--------------------------------GTATCTCA-----GTTCAATAATAGTCTT-------------------------------------------------------CAGCACTTCAGAATACAGATTGTTTCAAGTTGTTTGATAA----------------------------------------------------------------AGTGGAGTTTAGAGATTCAGttcaatacatatttat----------------aagACTATTTCAATTTTAACT----------------GCCACAGTTCCCCCAC---AAAGTATTTTCCCATTGGTTTTAATAGGACCT--AATTGT-----------agaaaattt---------------gataaaatataatctaatgaatagga---------------------------aaaatgcaaaataaagtaTAC--AACCTAGTGCCAGTAT-TAggtagaatt-----attttatatacaaat----ttCATTAT-AATATCACAGAATATCAGTAAAATTAGAAACTGGGGACATATGAAAGAAAGCCACTATACTAAAAGTCTTAGGAAACAATGATTTTTTCC--GAAAGCATTT-AAACTTAG-------------CCTTTTTACCTTGTATGTTTCTGTTTGAGTTTTgctattatttatcattttttttctttgtaaatgcaTTTTCA-----TTACTTATCTATGTCTGGTTTCTAATCT-------------ACTGACTTTCGTTCA---------TTttg--------------------ttcctctctcttttctgg------------------tTCCTCAA-----------------CCTTTGTTATCCAATTATT----------------CCTGGGTCTA--ATC-TAGGTTTGTGCTTGTCACTTCATGTGGATTTACCTCTTCTTAATCTTTGTTATACTTCCCTCCTGAATCCGTGCCTACAAAGATTACCTTAATAATCCCTTGATGTTGGTATAATCCCTTTGGGATTCACTCTATGCTTCTGTGTGACTGTTAACTTCATGTGCCAACTTGGCAAGGCCACCATAGCTTACTCAgatatttggccaaacattatTCTACATATTTCAGTGAAGTGATTT-GTGAGATGAGATTAGTATTTGC-----TACACATTGAGCAAAGCAAATTATCCTCCATAATGTGGGTGGGCTTTATCCAAG-TATTGAAAGCTTTAATAGGAAAAAGACCGACCTTCTTAGAAGAGTGAA----TTGAGCAGCAGACTGTGTTTACACTCAAACTGCAGCTCTTCCTGCAGCAAATAGTTGGCCAGCATACAAGGCAGAGAGGCTGGACATTCTAAGCCTCCTTAAATGAGTCCTTTCATGATGCCTTTCATGTGTCAGTTCCTTAAAATGAAATTCTGTG----------TGTATACAGTTATTTCTCCAG---TGTATGTCCCCTGTAGGATTGGCTTGAACTg--------------aacacagattaaaaatattaaaagagaagatCGACTGAATCTATACTAATATACAAGAGCTTTTTGTTG--TGATTATTCCTTATACAATACATTGTCACAGTTacttatattatatttatactcT--TAGgaattataagtaatctagagatgaccTACAACATTCAGGGGAATATGTAGGTTATATGCTAATACTGCATCGTGTTACATAAGGGATTTGAGCATTCATGTGTGTTGGCATCCAGGGATTACAGAACCTATCTTCCATGGAT

a score=28514
s chr3           149803750 2426 + 160039680 GCAGAATTTGCTG-------TACTTCACAATTCCATTTTAAGTATA-ATATACTTTTCAACAGAA------AAAAATTTTTTAAAAGATTCCTCAAAGGTAAAAATTAGTTTTCATTGTATTTCTTTGACTGAAGCTGACACCTGGCTCCTGTGTGGTGCAAGGAGACATAGGGTGGAAACCTCACTGGCTTTGGTGTGTCCTTTCCTGTGAATTCTGCCAGGTGGCA-------AGACCTGGGTT---GTTATGGTTCCACAGTGAGAGCAATGGTGAGGT---CTCCAGAACTGTCTCCCCAAAGTCTGACCCCCCCTAGTGAGTCTTTTTCTAACACCTTTA--ACTCTGCTCCAGGGTCTGTCAAAGATTAATTTCTCTACACCTTAAGGTCATAGGTACAGAGAAAAGAGGAGGAATCTAGTT-TTGTGTTAGTTCTATGTTCTGAGAAACATACCAGATTTACACGGTCTTGACCATGGAATAATGCTA-------GGCCAGGAGAGAGTCAACGAGTCCTTTAGTTTCTCTTGAGTTTCTAAGTCCTCGATGCCTCATTGCTGTGCAATATTCATTCTTTCTTCCAGAGTTGTAGTAAAGACACAGTCACTGTAAAGGGCTTTCTTTGTTCAGTATCAACTTCATAGGTACTGGCCATCAAATGTTAGGGTCCTGTACCCC--ATGGCCATTCTAGAAAGCCTAATGCAGTGTGGAGTGTGATGATGCTTTTCCCACAATATTTGTTTTCTGGTGCT-ATAAGACCAGA--------------------------AAGAACATTTTAACTTTCTTTCTTTTGTTTTGT-----------CTTGGGGTGTTAAGATTCAAAGCCAAGGCCTCAAATGGCTATGAGGACTGACTGATTCTTTGTTTTAAACTAAGACGAACCTACACATAAATTACAATTCTTTGTCCTTCTAGGACTGAGTCAAGAATGAaaaacaaaacaaaacaaaacaaaacaaaacCAGCACTTCTAAAT-AAAAAATAATGTTA--------TATGGGATGA-GTTATACTAGGAGATTATTTACTGCTTAGGATGTGAGATAAGAAGCAAGAATAAAAACTAGCTGATTAAAA---TATTTCAATAAAACATATACCAAGGTTTATTTTCTATGTATTAGTATATCA----TACATACAGAGTATAGAGTTCTCATTGTATTCAAATATAGAATAGATTTCTGATGTTATAAAATGTCAGTTTGCTCATAGATAATTGTGAAGGAAATGAAAAATAAATGAGACGCCGTGAACAGAC-----AGACTAGCTGCTCGAAAAGGCAA----------TAAATATG-AACACACatatttatttatat------------atttataCATATGCACGTAATG-----CAAT--------------------------------TTTGGTTT---------------TACCCTGTCAAAAGTAAATGATGAAATTAGTTCC--------ATCAAAA---------------------------------------ATGTATGTTAGTGATAATATTTATTTTTGTTTGTTGTAAGTAACCATTGGTGATATTTACAAAGGATTGCAAAACAATTCCTTAGTAAGTTAAAGGTCCCCAAGTTGTAAGAGATACATAAAGGGGGAGAACCTGGATTTTCTGTGCCATTGTTCTGAGATCACACGGTGAAGATTTAAAACTGGTTT---TATTGTGTCTTGCACTTTGCCCAAG------TTTGAGAGATAAATGAAAGCTGTGCCACTGTGAGTTTTTCTGAGAAATCAGGAACAGAAACAAAGCTACC--TGGAGCAGAC------AAACACGAAGCCATTAGACACATCTT-TGTTTTGATTACAGCAATTACCATAGCTCCTGCCAATTTCTCTATTCACCGCTTACTTATTATCTCATTATTTCTCCAGAGAAGCTGGGGTTGGATGTATCAAAGCTGACAACACAGTCAGTGTGAAGACATTTGTGCTTTTCACAGGGTAA-GAGTGGGTGGGGTCAGGGGCATGGCATCTATGGTGACTGACTGTCTACTGCGATGACACGGATGGTGTGTTTATAACTGGGCCCTGGAAATCAGTCACTGTGGGTGCTCTGTATTGCTTTTCATTTCCCTGAATTCATTGCTGAAAATTGCTGGCCACGTTTCTATTACGTCTTCCTCCTCTGTAATAACTGAACTGTAACTCCTGTGTTTCTT--TTGCTTGAAACTGAGACCAGGATTGGTACCTAATAAATCCTGCGCCTCTG-----ACAATGTGTCCAGGACCAGGCTAACTTCAGGGAAA--------CTAGTCAAACTCCATGAATGGTGAAAACGTGCAGACGTTTCAGCAAAACCCATTCTATGGGAAAAGTTTTCAGTATGACACATAACAATTGTGGCACACTGCAGCTATTCCATTGTATAGGAATGACCTGGCTGTAACACTCTCTCCGACAATTTGAGAAAATGTTTGGCAGGAGTCTTATTAAGTATTAGGTGAACCTTTCATATTTAGCG------TATAATGGCTGTCAAATACAAGTAAAAG-----------CAACCGAGCCTGCTGCTATGGAAGGACACTGGAGAAGCGGGAATGATAAGAAAGGTGAAGAGAAATAATTTCTA
s HiC_scaffold_1 136400290 2460 + 233722169 gtagaatttGCAGAGCTTTTTGCTCCAAAATCACTCCCAAAGGACATGTATCATTTTCATCAGAAGGAGCAAAAACTTTCCCTAAAGACTC--------------TGATTTCTGATTAtaaatcactgaaaaaaaatgtcCTCTGACTGCTCTG-GGTATGAGGAAA---ATTGTGGGAAAAGTATTAACTTTTGAA-GTCCCCCTTGGGGAAGACCGACAATGTGTACACACACGGACATGGATTCAGGTCATG-----ACAG--ACAATAATCCTGAAGCTCCCCCCAGATGTTAATATTCTAAAGATGAAATCCCAGAAT-----CCTTTCTAACACTTTTACAACAGTATTTCAAAATAAGCAACTACTGATTTTCATTAGGCCTCAAG-TCAAATGTGCAGAAGGAAGAAGA--AACCTACTTATTTTGCAAGATTTT-----------ACATTGGAGTTTGATAGTAGCTTAACCACATACTAGCATTATAACTTTAGTCAGGTTAT--TTAAC---TTCTacaccttcattttttttttcaaatgtcagATG---------TGGATGATCATTATTCTTTCCTCAAGGGTTGTAGTCAAGATCAAGTGCTTATGTCG---CCCCTTTGCCTGGAGCCTGGCTCACAGCTACTACTTAACCAATGTTGGGTTTCTGCACTCAGAAGGTCCTTTCTACAAA-TCTAATCCAACTTAATATAGGACACTTCTCTTCTTCC----TGTATTTCCCAGCGATGAAAAAACTGGAGTTCTCCACCAACAATCGCATATTCTAAGAACTGTTCAACT------ATGCTGTTCTATGCACAGAAATGCATGCGGTTTTTGAAACTAAAGCCATGC---------------AGGCTTAAC--------------AAATGAGGCTGGagctaaac-----------ctttccttctttctataaTTGAGCCATGGA-------------------------------ACCAATAGCTATAGTTTAGAAAATAATGTCAATAGTGCATGAAAGATGAAGGCATCCTAGTGGATTGTTTAGTACTTTGGATATGAGATGAAAAGCAAGAATAGAAATAAACTGACTGAAAATtcattccattaaaaaaaaatcctggaagCAC---------ACGAGTATACAAGCTTTACATATATGGTATAAATTTCTCTTTGGGTTCCAATATAATTTAGATTTCTGATAT----AAGTGACAATTAATTTGTGGATAATtggaagggaaatgaaaactaaatgaaaatttgtaaacatatgaaaaaaactagaaattaggaaaattaaaTCAGCTTCACAggtatatagcatatatataagTTTATTTCAGTCAAAAATAGTTGATAAAGTTACTCATAATGAAAATCAATGTTCTATAAATATAAcatccttgggctggggatttagttcagtggcataagcacctgccttgcaagcaggcagtcgtgagttcaatccccagtaccaataaaaaggaaaaagacaatatatatatatatatatatatatatatatatatatatataacatccTTTGTATCTACAATTAGTTAATTAGCATTGGTGATATCTATAagtaattacaaaata-ttttataacaaattaaAG---CAAAAGTTCTA------------------------------------GCCATGTTTAAGGGATTA------GGGAAACAAAaagtatttcaagtattttgtgtCATAATTTAGTCCAGAATTTTCTTAGAAGAAACCAGAAA-----------------TTTTGTGATGAGTgaagaatggaaataaaactaCTGTTGCCACAGCCTCATTTAAGCATACAGCCATAGGACCTGTCTTCTGCTAGAGTTACTGCA-TTACCGCAATTCTTGACAAATTTTCTACTTGC----TCCTTATTATTGCATTATTTCTGCCGAGAGGCAAAGCCTGAATATACTGTTGTTGATGTCCCAGACAAAATGAATACGTTTGCTCTTTT----GGGTGGCAAGCAGGTGGGGGAGTTACCTTGCAAAGCACAGTGAT--GCTCTCTCCTGGGATGACAGTGGTAGCATTTCTGTGACTTGCCTCTGAAATTTAGGTACCGCCAGtactctgtatta-ttttcatttccccaaattcattcctgaaaattGCTGGCCCCCTTTCCATTGCTCCTTCCTACCTTCTGCGAGCTGAGCtct--ctgctctgtttcctgaTTACCTGAAACTGAATTCAGGATTGTTACCTAATAAATCCTCAGATTCTGTGCTAGCATTGTGT--AGCCATATGgcaattctagaaaaaaaaagtaactagtCAAAACCTATGGAAGACAAAACTGTACAGACCTTTCAACAAAATTCTTCTCAAGGAAAAACTCCTCAGTGAGACACACATCAAGTGTGTTATGTTGCTGTGATTCCATTGTGTAAGAATGGCAGAGCAATAATTCCTGCGTAGACGAGTTGAATCAGGGATTCGGGAAAATCCTAGTCACATTTAGGTGACCATATAAGGCTTAAAGGGATTATACAGaggttataaagaaaaagaaaaggccaaGAGATGACAACTGAGTCTGAAGTTATAAAAtggaacaggaaaaataaaaatcaagagaaagcctaagaaaa--aattttta

a score=50116
s chr3           149809071 2510 + 160039680 TTTTAAGAAAACAGCATCTTATTTTGCCAC---TGCATATACAGAGACACCACTCTGAAGAAGGTCA-TCAGACACTTTGACCTTTTTTCGGGGTCTGATCAGCTGCTTCTTCTCAGGCTGCAGAA-----TCACTCCATGTCTCAGAAGGAAATTGTTTTATTTCCTTTTGTCAAGAACAACACAGATCTCATAGCAACCTGATTTGCCTGCTCTAAGGC--AGTGTGCTCACACAGCAAGAGTGTCCTGC--TGCTCTGTGGGAGGAAAAGGGA----TGAGTATGTCATCTATCAGGTGTTTCATTTTCTTCTTTACATAGAAATTCATCTCCTGGTCAAAGAAAGA-------ATAAAGGCCCT-AAAGGCATCCCTTGTCTTTCAGATTATATTCCTAACAGAATTCTACCATTTCTCTTTGATCATTTAATGGTTAAAGATATGTCAGCAACGACATT----GACTGAGCAGTGGAAATGGAGCTCTTATGACTAG-AGGATGATCTAGAAATAATGCTGAAGTGCCAAATTCCGGGTCTTATTCTAGACTCTTCGATGCAGCACAATGGGGTGGGAGCAGGGAGCTAGACTGTATTTTTAAC-----------------TGCACAGTCATGCTTGTCATTTAGAAGCACTTTAATAGCGTGATTAACATAACATAGATA--TTAAGTGGGGACCAAGAAG-ATGTGGTCAATGTAAGCTAGTGCATGGGAAGAA-GCCGTCAAGGGGGGGGA----GTGCACTGAGTTGGAGAATTAGCAATAA---------CTTCAGGTGATGACAGGGAAGCAGGCATGTTAGGGATGTTGGTGTTCTGGCAAGCCAAATAATCAAAGAAATAGTAAGCTAAGAACAGGAAAT--TATTTGCA----TGGATGGACGACCATA------TAATAATAAA---CATG-----GAGAGAAGATGGGCAGCAAAATGTGAATAATATTTTGTTATACTTAAAAGAT-----AAAGCTTTGGGCAG-------AATAATA-----AACATCAACTATAG---GATTATTTGGAAGTAGTAGGGGG---AAAGCAAGGTGAAATGAGACTAGTTGGATACAGCaataaacaaacaaataagcaaataaaaaata--aatGCAATGTCATCTAGGCATTTCAAGATGAGTTTAGAGTAGGAAGTTGTGGAGAGAACATAGAACTGTACTGGGTAGATCCTTCATGTCATGGATTAGATACAGGG--TTTGGTGCTGATTGCTTCCTCAGTCTTTAAGAC-GCTGATACCATTAATTGTAATGAGA----------AGGTAAATATTATGTGGGATGACAAAAGAAGGAAGGAAATTAATCTCTCAAATGCTGACTTCAAAGGGTTGAGAACAGACACTTCAGAAG---TTCAGTTGACATTCAGATGGATTCATTTCTTCTCTGGGCAGTTTTATGTGTAGGTCTAGAGTTCAATATAAGAGTCTAAGCTGAAGGAAAAAAACATAGAGACATTGTGTAGTCATTATAT---TGTCTTTGGACTAATAGGATAAAATGAGATTTATCAGCAGA-TCATA-GAAAAGGAAATCTTAGGACAGAAAATATAAGGCACACTAATGGTTGAAGAATGCAAGAATGAGGAGCACACTATGGGCCTGTGAAAGAT----------------TAGTGAGCTTCAAGAAGG--------------GACATTGAGCCCATAAAGA------CCAGGGATCTCAAATAACTCCA-AGATACAAATGGCTTAATAGTTCCTGTTGCTGTGAATAGAGAAAGGACTCTACTGTGGTGAGGCAGT-AAGAGACCAGTGGTGAATATGGTGAGGATTCTTTTAGGAAAATGACA--TACAGAAATCTCATTTGTATAGGTTAA-TGAGAG-TGAGGAATTTGGCACAGAGATTAGATTCTTTCCTGA----------GAAAGCACTTGAAGAC-AAAGTGGGCTCCTCCCTTATCAAATAACACCTCAAATCAGTACAACA---TATAAATTGGTTCCAGTAGATAATCAAGATTAAGGACCAATCAGAGTTCAAGAAAAGGACACAATGAACTTAATGTAGGAGGCTCAGAGAAAGAACCAAAACAAAG--GAAGAGAGAATGGCTGTCAGAAAGATGGACAGGAACCCCCAGTGAGCAATGACTGCTTCTAAACTCATTCCAAACACATTTAGCTAAAAAAAAGACATGATCAAAGCTTCAGAGAACCCTGTCTCAGAAGTCTGATTGTGCAACCTCAACTTGGCAATTAGTATATAAAAAACCACATTCACTGTCTGGAAACCACCCACGAGCACATTGACATTTATTATACGTAAGAGAATACACAACCCTGGACTGAACCAAAATGAAGGGAAAAGAGAAAGCTATTTGCAATCATTTCAATCAAGTTTCTCCAAACAGCAGACCACAGAGACATATTGCCAAGACCAATAAATAATGTCTTGAGAAATAGTTCATTGCATGTTTAGAATATCTCCTCTTCCAACTTTGTGTACACACAGAAACACGTTCTTCCCGAGGAAAGCACTCATCCCAGCGGTTGCAAATGACTGGATCTCACCATGGCTTGCAAGTTATGAACACTTTAAGTAAGGTTTTCATGGCTGATTTTGAA----------------ATGGTATAAAAAGTAAGTAA
s HiC_scaffold_1 136406127 2563 + 233722169 tcttaagacaaataattttcattttctcataggTGCTCATAGGGAAA----ACTTTGAAAAAGGCAAAGCATGCACTTTTGA-TTCTTTCTTGGTCTAATCTCTCCCTTGTTCTCTGTTGGCAATGGTCTGTCTTCCAGCAGTTCAGGCGAAAATTGTTTTAATTCCTCTTTTCCTGAAGATTACAGACCTCAGAGCAGCCTGATTGG--------AAGACCCAATGTATACATGTGGCAGGAATGCACTATAATTTTTTTCAGGAGAGATAGGAACTTATTCATATTACATACATCAatcatattatttctttctttatagacATTTTTACCTCTTGGTTAGAGAAAGGTTTTCTGATCAAGTCCTTCAAAGGCCTCGCCTCCCTGTCTCATGATCTTTGTGTCATAGTCTCCCTACCATACTAAAATCCCtaaatt-ttaggaatatggcTGGGTATACATTTCAAAAATCAGTGttgttaataaatttttaatgaatagtaGACTGATCTGGAAACAGTGTTAAAA-GATTAACACTGAGTGTCACCTTGGAGATTCTATTTCAATGCATTGGGGTGCCAATCAGGAGTTGACTTGGATGTCTAACCTCGGAAACTGAGATTGTCCATGGACATGCT---CAGTTA----CACTTCACTACAACAATTAACATATTGTAAAAAACTTCAATGGTGCTTAAAAAGGAAGTGATCAATTTAAATTAATGCTTCTGAAAAATAACCCCAAGAAGAGAAACTACGTGTAC------AGAGAAGCAGAAATTATTTGTTCTTCTTCAAGTAGTAACACAGA-GAAGAcatgtcagagataaaagaatcCCAGCAGGTTAAGCATGGCATAAAATGATGtactaggaaaaggaaaagacatttgTACCACTGGATGGTAGAATATAAGCAAGTAATACTGAAGGTCATGATTAAGCTAGTAGGTAGGATCCAAATCATGAataatatattgttatattttaagtattttttgagGTTATGTGTAGGCAATAAAATGATATGGTCATCACTGCCTTTAGAAAGATGATTTGGTAGTAATATGAAACTCAAGGCAAGGGGCTAAAATATTGGTTGAA-------------AaaggaacaatgaaaataaaattactgttgTAGTCTGAATAAGTGATGTCAGAAC---TTTTGGATAGTAAGTCGCAGTGCAGACAATGA----TAAAGTGAAAAATCTTACAATGACTGATTAGGTGCAGGTGCTTTTGAATGGAGGGCCAGCCTGTTCTCAAAGACTATTGGCACAATTTGTTGCGATAATATATGAATTCCAGTTAAATAATAAATTGGATGGCAAGAGCAG-AAGAGCACTGAGTTGatgaattctgttttaaaaatgtggagT-CTGAGTTTTTGCAAGCTATTTGTTTGATGCACAAATCCATTCATTTGTTCTACAAGTAATTATAAAGGT---TCTAGAGCTCAGTA-AAGAGTTTAAGCTG---GTAAAAATTCTGGCATCCTAATATATTCAATGCATAGATGTCTTTGGAATAATGAGATCAGATAAAATCACTTAGTAGAATGATAAGAAgatgaaaagttt---tagaaaagtTAAGGTTCACTAATGGTTAAACAATT-----------------------GCCTGTGGAAGATCTTAGCATAGTTTAActagaaagataaaagaagaattgagACAGCCCTGTCACTAAGCCAAAGGAAGAGAACCTCAGAGATGTCAGCTAGGTTAAGAAATAAGAAGAGCTCAATGATACCAAATACCACAGTTACTGAAAGGCATTGCCTG-AATTTGGCAGTTAAGCGACCAATGACATCTCTCATGAGAATTCtttcagaaaaatgacaaatgccAAAACCTTATTTGAGTAACTAAAATGAAAGATGAGAAATTTGATGTAGAATAAAAACTTTTCACTCATAGGTAGCTGGAAGAAACTGGAAAGCTAAACTGTGCCTTTATTTGATCAA-CAAAATCTTAAATCAAGACAGCACGTTTTAGAATGGT------AGAAAACCAAGACTGGGAACCAATCAGAGGTCAACAAAAGGACACAATGAGCCCGATGTAGGAGGCACACAGGAAGAGATAAATCATAGCGGGGGATGGAACGGCTGTCAAGGAGATGGAGAGGAACCCCCAGCAAGCAGTGACTACTTCTCAGCTCACTCTAAACACATCTAGCTAAAAATGTG---TGATCAAAGCTTCAGGGAACCCTGTCTCAGAAGTCTGATTTTGCAACCAAAACTTGGCAATTAGTAGCTGAAAA-CCACATTTATTGTCTAAAAACCACCCACGAGTACTTCGACATTTATTATACATAAGAGAATACACAACCCTGAACTgaactgaaataaaggaaaaacaaaaagctattTGCAATAATTTCAATCGACTTTCTCCAAACATCAGACTACTGAGTGATACTGCCAAGTCCAATAAATAAGCTCTCCAAATCTA--------CACGTTT------------------------------CACAGG--------------GAGGAAGCCGGTGATCCTAATTGCTAGAAATTGCTTTAT-TCACTATGCTAGCCAAGTTACAAATATTGAAAGTAA--TTTTAGTTGCTTTTTTAAGACAAACAACAATGCTGCGTGATATAATGAATAAGCAA

a score=33824
s chr3           149813008 1814 + 160039680 Taccagtagaattggttcagggctccccttg-tgtcctccctgaaacttaatgtgtttattgaaaacctgtatctgaacaaaaccacattctgagatggtatgtgtgagaaattcaacaaataaattgaagataggagaaataattcaactcttaataCATTATCatcagtatttattactg-atatcaatgttatcacaaaaatagaa-----cagcatcat-tgttttct----catggtgtctatagatcagaagcctctaaatttctcagtttc------tataagacctcaactaatattttactaagggttaaggtctctttttaaggctcgataagggaaggatgtggtctga----tctcacgtatttgttggcagaattcagttctctgtaatttcttggactgaggacttcattttcctgc-tgtttgcctgtggctatttcaataccttgctacatgggtctcaccaacacaatcaacttgtattatcaaaatcagtgagagaggatgtccctTGGTGAGGGTGATGCTTCACACGTCAATCAG--TAAACAAGGGTATCACTTCTCATTACCTTTGCTGCAGTGAAT-----AGGTAGAAAT------------------AGACTCAA--TAGGAAAACTATAATAAGGACTTGAGTATTAGGAGGGAAGGATGCTGGGTTCCACTTAAATTCATCCTATGACAGCCTTCCCTTGCAGAGCTACAGTGATTTAAAGATATTAAAAGCTCACAGAACACCATAGGGGGATAGCCTATTAGGCAATTAAGATAAAGTATGTCTCTCATCTCAGCATC---TAAGATGGTCTAC----------AATTTGCTTCCAACCCCGTTTTCTAAG-TAATATCCTTATCTACACGATGATTACCATATAACTCAGTGCTGTGTACAGCTTA--CTTTTTGAGG--TCCTAGGATTCCATCTG--AAACTTTATTCATTCTCCTTTCTAAATTCTTTGTATTCTT------------AAATTTTATAAGCTCAGAGACTGTTTTCTTGAACTCCTCCAGCTGGGGTGATATATCTCT----TTAGTCTTTTATTCAACTGTTAATTCTTTGGGGGGAATGATAAGATGTTTGCCATGAAATTTATAGCAAGGCAGGA---ATCCAACTTTgt---ccttctcttgaaatttacattttagaggaggagacaagcatta----caaagagtcaattaAGGAGCTGTA-CCAGAGCAGTGGACTGTGCAGAAATATAACAGTGTGCTCTTAGATCGAA----AGGAGTAATTTAATGTTGTTTGGTAGAAACAGAAAAA---TATAT---GTGGCCCTGGGCCTTCAAAA--AGAAGAAAAAAGTGGCAATAATTTCAAGTGAAGAATAGACTGAATTAGTAAGCGAATGATGTTCATAGAAAAGAAGAAAAGCTGACCTACCCAAAAAGTAGTACATGTTTA-TCCATGGGAGCAGTGCATCAGGACCCAAAGACTAAAAATCTTAAAGGCTGCTCAGAGTCACCTCCAGCTCTGTTTAATGATATTGTGAACAATCTGTAAAAGACATTAA-AAAGCAAGTGGCCCTATGGAATGTAAGTTTTCCAAAG-ACTACTCCTGTGATTCTCAGAATTGGTAGAAGACACGTAAAGATCTAGGGAAATCAATTATCATTAAGCTTTTAGTG--------GAAATTGGTTCATAAGAATACCATTGTCCATAACCAGAGTTAA-aaactgcagccccgaatcctactctgatctattcacaggaaa---cataagccaaaaattgttcccacatttttagaggttgtaaaaatgaaacaaagcacatgcaggattgtatataaccacaacaccacacctaaaatatttgctatctagactcttgtgagaaaacttacTT
s HiC_scaffold_1 136409213 1862 + 233722169 tgctGGTCATATAGGGCCACGGCTCCCCCTAATGACCTGGTTGTAATTTAATTTCCCGTTTCTGACCCTATCTCCAGATATGGCCACATTTTGAAGTTTTAGGAGTGAGGTTTTTGGCATATGCATTTTAGG--GGAAACAAAATTCAGCCCCTAATGTTCAGTCCGCAGTGCCTATTATGGTATGATAATGTTACTGCACATTTAGCAGTTTACACCAACATATGTTAGCTATAGCACAGTCTGTGTGGAACAGGAATTTGTATGGCCTTTAGCTTCGTGTTCTACAAGACTTGAGTGAATGTATCACTTAGGGACATAGCCTTATTTCAAAGCTTTCCTGGAAAGGCTTTATATCTAAGCCACCCAGCATACTTG---GCAGATTTCAGTTCCTTGTGGCCAAGAGAAC-AAGAACCTTGTCTCGCTACCTGTCTGCTAGGGTCACTTTTGATTTCTTGCTCTCAGTGGCTtctcaatgtgatcatcatgtTTTACTGAAGTTAGTGAAAAAGAAAGTCTCTGAGTAAGATTAGTGTTACG-ACCTGAGGTAGCATAACCATCGAAATGGCTTCTCATCATTTTTACCATATTTGATTGTTCAGATGGAAGTTTTTTGCATGTTGTATCTACACTCAAGATACAGAAATTACA-CACTTACTTGAATATCAGGAGAAGAG-ACACTGGGTTCAGCTTGAATTGTCTCCCTGACAACTCTCCCTTAGAGAGTTACAATGGTTTAAGCATATTAAAAACCCTGGGAACACCATATGGGAATGTCCTATTAACCAGTTAAGATAAAGAATATCCCttatctgagcatctattaagagtaTCTATTAAGACCATAAATTTCTTTTCA--CCTGTTTTTGAGGATgatgtcattttatttctcttaaacacTATATAACTCAGTACACTGAGCAGCTTGGTCTTTTCTAGGCATCCTGTGTTTCTATAGAATAAACTTTActaatttgcctttttaaatgcCTCCAATTATTTAAGCTTAGTTCAGATTTCACTAGCTCCATGAACATTCTCTTGAACATTTCCAGCTGTAGTTATATATTCATTCTGTTAGTTCTTTATTAGACAAGCAATTATTT-GAGAAAATGATAAGTTGCTAGATGTGGATTTTATAGCAGAAAAGAAACTATATCATTTGGTCAGCATTCTCTTGGAATTTTCATCCTAAAGGATGAGAGAAGCataaaaggtaaagaatcaattACATAACAGCAGATAAAGTATTATACCATGCAGGAAAACAGCAGGGTACTCTTAGAGAGAAAAAGAGTAGGAACTTAAATTTGTTTGAGATGATCAGAGAAAACCCAAATAAAGTGATTCTGAGACATCAAAGCTAAAGGGAAAGAGGGCCAATGATT------------CAGACTGTA------------------------AAACGAAGAGAGGTTGGTACACCTGAAATACAATATGTGTTCAGTAAATGTGAAGAGGTCAGTAAGGCCTGCATGATTAGTAGCTTGAAACCTACTTAA---------CAATTGTGTTTTATATTA--GCAAACCAC---TAAAGGACTTTAAGAAAGAAAGCCACACTATCAGATTTAAGCCTTCAAAAATACCACTCATGTTGTTCTGTTAATGGAttaaagatggagaaagaagcagagaaatcaATTAACATTAAGGTTGTCTTGTATATGCAGACATTAGTTCCCGGCGGTAGCAGGCTCTATACCAGGAGTTAGTAAACTATGGTCTCTGCCCCTCC------CTACT-ACAGTACAGCCCTTAAGCTAGGAAGAGTTTAGACAGCTGTTTAGGTTgcaagaaataaacacaaaataagtaaaactctacaTGTTT----CACAAAGCCTAAACTATTGACTCTCTGGACTTTTAT---AAAGCATGCTT

a score=9953
s chr3           149814844 974 + 160039680 TCTGTTGTGTGGTTTCCATTATATTTCTCAA------------GAAATGCGGTTGC--------------ATCCTGTAAGGTTCTGAGTATCTCT--CAACACTGCACTTTTCTCATCAAGCACACATGTCTGATGTTCGTGACTGAGAACCATGACTGATGAGCACATTTCGTCTGATATGTTTGTGGGAGAGTCAAGGGAGCATGTCAAACA--GAGCCAGCTCTATGAGCCTGGAGCACCGACCAGAGGGCCTGGATGCAAAGCAAACCTGGGGAATTGCTGGGTTATAAATGTTACCCAACATTAACTCTACAGGAAGAGGTAAAGCTGTTTAGGAGTCGGCTTGAGAGTGAGGGGATCAGACAGAGGATGGACGAGACATGATATGAAAAGTTGGACTAAAAGCGACCTTTGATTTTTCAGTCCTTCTATGGTCAT---GTAGCAAATTACAC--ATGCAATTTAATTACACAGTGCAATTTACAGTAGTTCTTCCT-----TACAGAAGAAGGATGGAAATAGCGTCAATGATTAGAGTCTAGTAAACTGATTTGTGCATGTGTGTGGAAACTTGCAAATCTATACAAGCATGGTGTAGCTTCTTCTTGTGTCTCTTGTGCCC---------CCAGCTGTT---------GGCATGATGTTTTA----------------TGTGTAGTAGGCACTCAATATATGTTTCCATTTAAAATGCCAGTATTTCAAATCTCTCCCTAAATAAAATATGTAGTTTttttgttttgttttg------ttttgttttTAAAAAACAGACTAAGTTTAAAGTAGTCTTAACATACTGCTCTCCATATTTGGGAGGTTTAGGTTGTATTTTGGTCTAT---TTACAGGATGtttaaaaaatttatcattattttttata----taaatattttCTAGACTACAGAACAAGTCATTACTTGACTGTTTCCTTTTGTAGAGT-CTCTTTGGGGAGATTATTTGAGAAAGTCAATCCTGTACATTTAAAACCAGATGCTGTGTTTTCATA---ATAACTGTCTGTTTAATTT
s HiC_scaffold_1 136411746 925 + 233722169 TCTATcgtgtggttttcattttttcttccagcAGCATAGACTTGAATCTGAGTTTCTAGACCTCACAACAATTTTGTGAGCTTCCGAATACATTTACTTCCAATGTCTTTTTCTCAGTCAGAGTCAGGTTCTGTTGATTGCAACTAAGAAGCATGACTGATGAAGACATTTAATTTGATACGCCTGTGGGACATTCAAGTGAAGACATTAAGCAGGGAGCTTGCTACACAACTCTGAAGCGCGGAGGATAAGTCTTGGCTGGAGAGAGAAATTTGGGAATTGTTGAactataaatgttat------ttaaagctACAGGAATGAATAAAATTGTTTAGGAGTCGAAAGTAAAGCTAAGATGT-AggcagaaaatggcaaaaaattaACGTAAGAAGTTGAG--GAAGACAATT-----TTTTTccatcattctgttttttttccataGGATTTTATGCCTATACTATTTAA-TATATTCTGCCTTACATCATAGCTATTCCTTCACCTACATAA------------------------------------AAATAGGTTATGGCGTATGTATA------TGtaaagctat----------tttttttctttttttttttttttttgcctatatGGGAACTACCTGTTCATTGAagggaaattctgttttattttctccttcacGTCTGTCTAGTAGTCA-GCATTATTTATAAACACTGAAAAG--TAATATTTC-AGTCTCTTTTTCCA--------------CCTTCAGTTTATTTAGAGtcaatttagtttttaaataa----------ttaaa-------------------ttctatattctatggg----------GTTTTGGTCTATAGATTACA-----CTtggtaaaataattgttttttttcccccccttggACATTTCTTAGACCACAGAATTGAAAGTAACTGAGCTGTTTTTTCCTGTAGAATGATCTTTGGAAAGTTT-----------TCAACTCTGTAGTTTCTAAAtcaactaatatatatatatatatatatatatatatttatctt

a score=58280
s chr3           149816798 4051 + 160039680 [encoded data, 4291 characters]
s HiC_scaffold_1 136413196 3703 + 233722169 [encoded data, 4291 characters]

a score=116960
s chr3           149824730 3254 + 160039680 CTCTTCATTTGGctcccttccttttctcctctcgtctctgtctcctctgtctttcctgtcttcaaccttccctccatc-ctcacctctTTTT----CTCAAGCGTAAACTGTAATTCTTGTTTTCTACTGGTTTCCAATCATAtttttctatttatttattttttttattttttttttttttGCAGGAAAAACTCTCGGAGGCCCCCTTGCACTGCTCCCACCTCATGGGGCTCTCAGAAGAAAGTATATTTGTGTTTCAATTTTGTTTATTTATTAATAAAGATTGTCATGGTCCTGCTTCAAATAACCTTGGGGCTTCTAGTAAATGCATTTGTTTCAGAACCCTTTCACCAGAAGCAAAGGATATTTTGT-TCTGTT----TTATCAATTAACAAGAGAAAAATAACATGCATAGAAATTAAC------TTCCTGCATTAAGACTGAATTATCTTCAGTGCAGAGTTGTTATTTGGAAAAATTCGAGAGAAATTATTCAACATTGCTTT--ACTGAGCTCCAACATGAGAACtttaattttaataaaaaaaaaGACAGTCAAGTATTTGGTATTTTTTCTATAGATGGTGTCCAAAGAACATATTTTAATAGTCTCTGTGTAGATGTGTAGTTTCAATTGTATTACACAGATTAAAGCTA--AATTTTTTGAGTGGGGGAAAAT--AGCTAAAAAGCCATTGCATAGCTTCCAGAGGCTAAATATTCTTTTTAATATTTGTGAGCTGAAACCAAATTACGAGCATCGTTCTATGCTGATTTTGCTGTTTGCTGAAACAGTACTTAATGTATTTCTATTGTCAATCAGATATTTGGGGCACAATTTAGGAATGTTTTCCTTCAAAAAATGTATGCCATGAAAAATTTAAAAAGTCAAA-GGAAATGTACAAAATTACTTTCTCCCAAAAGAGCTGCAAAACATTAGTCTCTGAGACAC-------TGGGTTGAC----AGAAACATTTGCATTTAGCAGGCTGCTTTATCTATGGATTTAAAACCTCAACCTCTCACCC--ACCTCAGAGTCTACTTTAAACCTCCTTAAGATTTGTAACACAAAAGTAAGAGGAAC--GTGCTGAGCAGCAAATCAACACCACTAGTGAGC--CTGAATCCTTTTACCACAGAACTATTTTCATTGTATTTGATATAAAGATGCATTT-GCAAAGGGACTGACAAAACACAATTTGAAGCAACCAGTTAAAGCAATGGCAAACATTTGGAAAGGAGGAGAAGGGAAAAGGCAGTTGATTTCTATTTTGCTTAAGGTCGCCTACAGGTCTTGTGGAACACAGACTCCATTTTCATATATTTTAATACAATCTGTATAGGAAATTTAAGTAATGATTGTGGAAAGAATTGGATCTACAGGAGCAAAACGAAATGTCGCTTTAACATTAACCTCTCAGTGACGGATAAGGGAACGGAAACAAA---GACCACTTTCTCCAAGTTAAAAGGCAAGAGATATCTGTGCCCTAGCTGATGATGTGAAAGGAATA-TTTGATAGCTGTGGCCTTGAAACA---------GGCTTTAGAATTGCTCTAGGAGTATGAGATTAA-ATACCAAACATTTATTTTATTTAGAAATGCATCATAAATAAGGAG----ATTTAAGGGTCAGGTTGTCCTGTCCTTGAGTGTTGTTGCTTTAAAAAAAAAATAATAACAATAACATTGCAAGTGAAATCTCAACGGGTTCCCACTCATGTCTTCTCTT-----TGTGTAGATGGTGCCAAA--GCCAGCATCTACTCCCAAATAACTTGGCTTTGGTTCACAGTAAAGGAAAC-ATCTTGGGTCTTACTTGTATCCTGGACTCCCGTTTTGTATGCCTTTTAAAGACACATGTAGCATATTTTCATATAATAGCTTATTCTGCCAGCAAGAGGATAATTGCAGCTTCAAGCACAATTTCAGACTTCCAGGCTGACCTCCTGTAGCATCTTCTTCCTTTCACATCCTTAAAAA--AATCACCCCCCCCATGGGTGGTACTCTGCTTATTTCTATAATTTATACATCTGTTTTCTTATGCATTGTGTGACTCATAAAATAATACAAAAAAGTAAGTTCTGAGTGAACAGCACAATGTCTGCCACTCGACCGCTTGAGTCAGTGTGTAATAATTGGACTGAATATATGGATAGGCCATTATGAGACTTGTTAAAGTTTATGTCAGGTCCACAGGATAATTACTGAAGGCCTAATTCAGACCAGCTTTCTCCCACAAAATCAAATAAAGGAGGTACCGGACACACCATGCATCAGAGGGATTAGCCAATTCTCTTTGCACAGCAGTGACCTTTGTATCTC-TCCATTAACGAGTGGGAAAGATTTAACTGCACTGCGGGCACTCGCGTGCGTATTTTCTGGCCATTATTTAAAACATGTCAAAATGAGTTCTGCAGCGCTTCAGTCTCTTATTTAACT---------------------------CACCTGttccccacttcc----tcccttcctttttacccctc------------tttctcttttttttgtcaaccttccctttctctttcact-cctcccctctctactaccttcctAATTTATTTTTTC-CTTTGGTCTTTCTGTCATGTATGTGC--TTATGTGCATTCCTCtgtgtgtgtgtgtgtgtg-------tgtgtg-tgtgtgtgtgtTATTATCCTGGAAAATTCTGCAGGGGTCTTGGAACTGTACCCTTTGGAAGTTTTGTTATGACAACTGCACTGCTTATCAACTAGGAACTGAACGTCTACACTTCTCCT-GCCTTGGAGGTCACCGTGTGTCTGGTATTTTGTGATTTAATTGCACAGTGGATGTAGGTTTTAATCTGTTAGAGGAAAGGCAGATGCAGACTTGATGAGGTAATCTTTTACCCTCCACATCAGATTTCACTTAAGTAGTAGTCAACATGTAGCCTTAATTGGCAGTCAAGTAAGAACTCTGTTGACTGTAGCTAAATGCATGTTACCTAATTGTATAATT-ATATAACTTCATGCAAAATTCAAGGCATGGGTGCACTTCCTAAAGATGGAATATCTGAGTATAAATCAATGACTTAGGGTTTTTTTTTAAT--TGAAAAGTTCATTTATTCAATGGCCTGTGACTTTATGGGTCAGTTAATTATTAGATTTCAAAGTTAATTAGGCTAATGGACATGTAAGCAGTATAACTGATATGTATCCAGTTGTTTTAATATTTCATAAATGCAGCTGCCTTTTGGTCTTTTTCAAGGATACAAATAATT----AAAAAATATATGCATTAATTTGAGaggtttggtaaatatcttttccaaatctgttgattgcctttttgtcct
s HiC_scaffold_1 136419512 3246 + 233722169 ctctccctctttttcaccccatcttctcttc-cttccctccttcctctttccttcctccctttctccttccctccctttctcccctcATTTTTCCTCACAGTCACCTACTATAATTCTG------TATCAGTTTCCGAGC-----------TTTAGATGGCTTTCTTAAATTTTC-------ACAGAAACAAATATTAGAGGCTTCATTTT--TGCTCCTGAGTTCTGTGGCTTTCAGTA-AAATTGTATTTGTGCttcaattttctgcattttctattaaAGTTTGTCATGGTCCTGTTTCTAGAAACCCTGCAGCTTCTAATAACTGAATTTGTTGCAAGATTCCTTT--CAGTAACAACAG-TACTTTGTGTGTGTGGAAGTAGtccaaatataaaagaaaaagtacttacatAGAAATTAAGAGACAGTTTGTGGAT----ACCAAATCTCCTTTTACACGGCATTGGTGTTTTGGAAAATTCAAGGGACATTATTCAAGGTTGCTTTCTACTCAGATCTAACATGAGGTTTTCAA-------------AACTGTACTCAAG-ATATAGTAATTTTTCTATAGACTGTGTCCAAAGAACAAACTTTAAAAACCTCTCTGTGGGTGTATAGTTTTTATTAAATTGTGTAGATTAAATCCAGAAACTATTTTTTTAGGATAAGATTTATCATGAAAGCAATAGCATTGCCCTTagaggttaa----tttttaaaatatttgcaagctGAAATAAAGTTGCAAACACCTTATTTT--CAATACTCGTCATTGAGAACAtattatttaatgtatttctCTTGCAAATCAG-TGTTGAGGTGTCAAgttacacatatttttctttaaaa--tttaaattatgaaga--taaaaatatcaaacaaaaatgtACAAAGCCACTTTCTCCCAAAacagctgcaaaaaaaaaa-----aagacaccttgAAGTGGGACCACGAGAAGAAACATTTGCATTTAGTAAGCTGCATTATTTATAGATGTAGAACTGTACCTTCTCAGCCTGATCTagtagtttattttaaa--tacataagatttacaaaacaaaagtaagagAAACATGTGTAgagcaataaataaatactgcTCATGAGCTTCTGTATTCTTTTAGCGTTACAcgattttcatcatttttgacATAAAGATGTGTTTCACAAGGAGA---AAAAAGCACACTTTGGAATAACTAAGTTGTG-AATGAAAAAC---TGGtaactaaaagaaaggaaatggt-tTTGATTTCCATTATATTCAAGGTCACATGCAGGTCATGTTTAACACAgattccattttcatttattttaataaaacatatataagGACTTTAGGTAACAGCTGTGGAAAGAATTTGATCTACAGGAGCAAAACTAAGTGTCATTTTAATGTTAACCTTCTAGTGCTGAAGAAGCAAACAGGAGCAAAAATGAATGCTTTTTCTGAATCAGAAGGCA-GAAATATTTGTGCCTTAGCTATTGACgtgaaagaaataattcaatagtGGTTGCTGTATAACAAGATATCCCGGATTTGGCTTTATAACAAGAATAGCAAATTAATATGTcaa---catattttatttagaaactgAGTATATACAAGGAGTAAAAGTTAAGTGTCAACTTGTCTTGTCCTTG-GTAT----GTTTTGAAAATAGTGTGGcagaaat-----------tgaaat-tataccGATCACTACCCATATCTTCCCTCCTTACTTTGAAGATTGACCCAGACAGATGGCATCTGCTCTTAAATT-CTCTGCTGTCACCCTTGGATGAGGAGACTGGTTTGGGTCCTACATATACCTTGGTCCCTTgtcct-tgtattttttaaagggaCACACTGCATCTCATCTTCTGGTAACTTATTATACCAG-AAGAGGATAATTGCAACTTCAGGGATGATTTTAGGCTTCGAAGCTGAACTCATTCAGCAT-TTCACTGAGACACAGCATTAAGAATCAACTTGCTTTCCCATGGGTGGCATTCTGCTTATTTCTCTAGTTTACATGGctgttttatt-tccattgtatgaaaggTAAAGCAATTCCAAAGA---AGTTTTGAGGGGATGGCGCAGCGTCTGCTGCCCAGCTGCTTGAGGCAGTATGTAATAATTGGCCTGAATATAAAGATAGGCCATTAGGAGACTTGTTAAAGTTCGTGTCAGTTCCCTGCCATAATTACTGAAGGCCTAATTCAGACCAGCTTTCCtccacaaaattaaataaaagaggtACTCGATACACCAGGCTTCAGAGGGATCAGTCAATTCTCTTTGTGCAGCAGTGACCTTTGAATCCCCTCTATTAACGAGTGGGAAAAATTAAACTGCGATGCACGTGTCCTTGTG----TTTTCCGGCCATCATTTAAAGCATGTCAAAAGGAGTTCAGTAGCTCTTCAGTCTTTT--TTAACCTTACCAGTTAGTCAAGAATTTCAAGaccaccttttcttttcttttcttttcccttccttcttctctctcccccctccttccttcttttcttctttttcattctttctttcctcctcctctgcctcttttCTCCTCCCCGTCCATGTCTCACTCTTCCTCCTtcatccttctctctctttctcgcctttccttccttccctcctagtcttcctttttttaattaaactgagagctatttaaatgtt-ttctcttgCATAATTTTGTGGGAGTCCTGGAACTGTGCACCACTGGAGTTCTGTGA-AATAACTGTCTTGCTTGTCAActagaaaatgaatatatataccGATCCTCGCCATGGAGGTCACATTGTGTCTAGTATTTTGTGATTTAATTGCATACTGAAAGTAGGCTTGAatctgttagaaaaaagacagatgCAGACTTGATGAAGTAATCTTTTACCCTCCACATCATATTTCATTTAAGTAGTAGTCAACACGCAGCCCTAATTGGCAGTCAAATCAGGAGTCTGTTGACTGTAGCTAAGTGCATATTGCCTAATTGTATAATTCACATAACTTCATGCAAACCTCCAGGTATGAATGCACTTCCTAAGCATGAAATTGTTGAGCATAAATCAATGAC---------TTTCTAAATCCTGaaaagttcatttattcattggtCTGTGACTTCATGGGTCACTTAATTATTACATTTCAGAGTTAATTAGGTTAATGGACATATAAGTACTACACTTGATATGGAACCAGTTATTTTAACGTTTAATAAATGTGgaag-tttttagtcattttcatggatacaaataatttttaaagtcatgttTCCATTaatccaag----------------tttttcttttctgt---ttgttttcttgtctt

a score=7265
s chr3           149835096 495 + 160039680 GATGATGCAGTCACTGACGGCGATTGTCATGCAGCCTCACAGAGGTGACAGCATGAGGGATTATACAAGAAAGAACAAAGTTTT---------AAACCATAAATCTTCTCAAGAATCTATTGGATGATATAACAGTAATCATAATCCAAAAGGGAATGTTTTAAATTTCGTTTGACTTGT-------GAAATTTTGTAATTAATTCTTATTAATGACCTTTTTATATTCTCACCATCCAAAAACCTCTTGCTCAGTACTGGCATCACATCA-TTTGCGACTGAACAAAATGTAAAATAAACAACATTATGGATAGTTTCAAAAGCATTTTTTTTTCTCCTT---ACTTAAGACCTGAACCTATTTTTCTCCACTGATTTTCAATATTGTTTCTATTTTCGACAATTATTCAAATGTTCTTTGAAGCAGTTTTGTGAC-TTTGTCAATCC--AAACTCCTTGAGAGTTTTCCATATCTATAACATTAAGTCA-CTTAAAGTCATTAAGTATTTCTTTTCT
s HiC_scaffold_1 136426847 463 + 233722169 GATGTTAAAGTCACTGGTGACAATTGCCATGC-TCCCCAAATCTGTCTTATCActa--------ataaataagaatcatactttttgctgaaagaaaagtaaatattttctagCACTTTTTGGAGAA-------GTAACCTTA-TCAAAAACAGTGG---TTGAACTCAGTTTGAGCTATTACTCTGGAGGTTTT-----TGATTCTTATTAATGATCTCTTTATATTCTTAACATACAAAAACTATTTGCTCAGAAACTATATCACATGATTTTTCCATAGAACATAATCTATGATA---------------AGtctc-----cattttgcttttgttttgaaaaataggaC----ATCTGTCTTTCTACATTG--TTATAA----GTTCTCATTCCCTTTGACAGTTCAGAAATTCTGTGTAGTATTTCTGAATCACTTATAAATTCTAAATCTCCCAGACCTTTTCCTAAATCCA-AACATAAACTAATCTCAAAATCATTAggtgtttcctttct

a score=62370
s chr3           149836446 1413 + 160039680 ACCCAGGATGGACATTGAGAT------ACCTGCTCGTTCTCTCAGAAGGGGCTATG-CCACTTTGGAATCATAGGACCACAGGGAACCAGCTTTTAAGGATGTATCTTGCTTTTGAGACCTGCAGATTGGAATAAGTTTGTAAATGGT----TAGATTCAAGTACATAAGTATGAGCAGACAGAGCACTCAGCATGTCT-GTCACAC--GAGCATTTCTGTAGCAGCCAGTTTAGATTTATTCCTCAGACCATTCATCGTCTGCTGAAGAGAAAGAGGGAGTCACTGAAGCTATTTTATTAGCAGTGCTGCACACTGAGTGCTCTTCCGAAGCCTCCTTTTATAACACTTTAAAAATCATTCTCTAATTTAACAACGATATTAAGAGAGCTCTTTCATTCAGTCCAATTATGGGAAAGCACACTCATTTTTTTTAAGGGGTTAATCTTTAGGGATGAAACAGATTATCAGCTTTTGAACCAATTTAAGTAGAATCTCCAGAAACAAAGCCAGGACAAATAATTATTGGCAGTTCACAGAAGGCATCCTGTGCCCACTGCTCGGCAGGATTCCGTTCAAGTCAGCGTGCTTGTCTTAATGGGAAACACCTGTGGTACGAAATGCACGAAGACAAATCAAACTAACTGTGCTCTGAGACACTCAAACTAAATTATGGAAATAAAAATCTCCTGCACTCAGCATCAGCAATGTCCCTCTTTCCCTTGAAACAGATATTAAAGAGAGAGTGTTTAGAAAGTA-TTATTTCCCCAAGGCATTCCGGGACTCTCCACATTGTCAAAGACCACATCAGCTAGAAGAC----AAATCCCCTAGAGTCCACGGCCATTGTTTCAGAGGTCCATTAATTTTTTTTTCAAAGAACAAGCTTGTGAAAAGAC-ATGCAAATTCTTTGCATCTTAGACTTGGGGAATTATTCACATATCAAAAA--TTCATAGAGTGTTTTCTATACCACCCACGCCAGAAAAGAGGTTTTAGATACTATTGTTATTTTTATAGAAAGAAAAA--------ACCTAATTTCTTTAGAAA-----------TAGAAATAAAATTTGTTAAAATGACCTGATAG--AAGGGACAAGATACTTAG------GGGGAAAATTA----CAAAATAATG---GACTGACCACTAATGGATGGTTACAGGAAACT---------GAAAAAAAGTCTTTGGCAAAACTGTATAGAGAACCATAGGGGACCAGGGTTGTCCTGCTAGGGCACACGTGTTGCTCTATAAATTTGAGATAGCATTTCTGCTTTGTTGTTTCGTTTTACTGAAA---GAACGATCCTTATATTGGACAGTACAGTACATATTTTATTTCAAACAGAAAT----------AGGCTATTACTTTT-----------GAAAGGAATGAGGGACAACATATTCAAGTGATTTCTGTAGCCAAGAAGGAGTTTTCCATCTTGTAAACAGAGGTGATTATAAGAAGGAAAGCA
s HiC_scaffold_1 136427765 1470 + 233722169 ACTGATGAAGGATGTTGAAATGTGTCCATCTATTCGTTCTTTGAGAGGAGACTGTGGCCATTTTAAGACCACTAGATTGC--TGATCCAGGTTTTAAAAGCGCAACTTGTTTCAGAGAACTGCAAATTAGAATAAGTTTGTAAATGATGTCTTAAGTTGGAATTCACATTCCCAAGCAGACTCAGCAGTCAGCATGTCTTGTAATACCAGCGCGTTTAGGTTCCAGCCGGTTTAGATTCATTACTGATCCCACT----GTCTGCCGAAAAGACTGAGAGAATTGATGAAGCTATTTTATTAGCAGTGCTACATATTGAGTGCTCTTCCGAAGCCTCCTTTTATCacactttaaaaatcattctctAATTTAACAACGATATTAAGAGAGCTCTTTTATTCAGTCCAATTACGCGAAAGCACACTCATTTTTTT-AAGGGGTTAATCTTTAGGGATGAAACAGATTATCAGCTTTTGAACCAATTTAAGTAGAATCTCCAGAAACAAAGCCAGGACAAATAATTATTGGCAGTTCACAGAAGGCATTCTGTGCCCACCGCTCTGCTGGATTCCGTTAAAGTCAGCTTACTTGTCTTAATGGAAAACACCTGTGGTCCGGGACGTACGAAGACAAATCAAACTAACTGTGCTTTGAGACACTCAAactaaattatggaaataaaaatctccTCATCTCAGCATCACCGGTGTCCCTCTTTCCCTTGAAACAGATATTAAAGAGAGGCTGTTTTGAAAGCATTTATTTCCCAGAGGCATTCCAGGACTCTCCACATTGTCAAAAAACACATCAACCAGAAGACGAGGAAGGCCCTCAGA------TGCCATTATTTCAGTGGcccattaa-ataattttaaaagagcaaGCTTGTAAAAACTCAATGCAAATTCTTTTCTTCTCAAACTTGGGGAATTACTACTGTATCCAAAAGGTGCCGGAGGTATTTTCTCTCGTACTTACACCAGGTGAGACG---TACATATTATGACAACTTTTTGACAAAAAAAGACAACTTTTACTGAAAATCATTAGAGAAGATAAACAGCTAGAGACAA-----GTTCGTGTGATCTGATGGAAAAGTGAGAAGGTCTTTAATTATCCTAAAATAACTAGAATCAAAATGATGCATGTCTG--CATTAATGCGTAGTCATAGAACACTCTAAGGATAAAACAGAGGTATTTG--AAAACCACGTAGAGACTACGAGAAAAAAGAGGTTGACATGTTAGGGCAGAAG-GAGAAGCTACCAGTCAGAAGGCAGAGTTTTACTTTGCTTCCATCTTTCCCTGAAAGTGGAAGAGTCCTTAAATTGGACACTGTGGAATAAAATTTATTCAGAACAGGCACTTTTTCTGTGAGACTGTTAAATTTGCAAGTTACTAGAAAGGAATGATTGACAACATAATTTGATTATTTCTCTGgataagaatgag-----aaaaaagtaaagagatGTGAGCATCATAAGTGAAGCA

a score=39347
s chr3           149841285 2081 + 160039680 TTCAAAAAATTTCATGTCTCATTGATAATGCTGAGGAA--GCTTTTAAAAAATTTATCTGCTTTTT--TTGACATGAAC--------------TTCCTTTAAAAGACCCTATGTCTGGTATCGTATCACACATTTCTTCAGTGTCAGGACACTCAAATGATAACTCACATAGACTTGCTGATATTATTTTCAAGGTTGCCATGTTTATAGTTGACTTTCTCTGAAAGTATTTGAAGCAGAGTGGGAGTTGTTGTTGGCACATAACCATTGTTTTGTTTATTATCATTTT-----ATTTCA-------TTCGCTTCTTGAAAGA---CTTCTCACTTCAGAATTTAAATTCAGTATATACATCTCTAAAAATGTGTTA-GACAAAATGATTTCAGTTTTCAGATTTTTCAAATAAAAAAGTGACAATTTTCCATCGACTTATATCTACTGATACCATTTGCAATGCTTTTAAATAGCCAGGGTTTCTGTTGGTAGACGGAAATACACCATCAGACAGTGCTCTGAGCTTTTGCAGCTTATGGATTTGTTCTATTCTGGAAAACATCAAAAGAAAGACCGTCTCTTCTATAACACCAGTGAAACTGCTTTGTTATAGCTTTGACGACTGGAACC-----AAGGGAGGAACTAGTACATGTAATGTTTCATTATTGAGATTACATGTAATCTCTAGGGCCTAGGCATGTTTA--------------GGAAAACAGCATCAGCATGTGAATAATCATGTTTGatttttttaattaaaaatataGTTTCAGA-TGTAATGTAATGGCATTAA--------AAAAATGAGTGAAGCTCAGAAGCGATAAAACTGATCCAACGATTATTTAGTTATTGGAATATCAAGGTCAATTGCAGAATACAAAATCCCATTGGTTTCTCCACGGATGAGATTACATCCTATAATTATTTTATGCTGTCATTGCTGACACCAATACTCACCAGACTGGTGACTTCCTGGACAGCCAGTCTATGAGAGGTGTTAAAAATCCATTCTTTGGAAAGAGTCAGAAGAAATGTGGTTCTAGTTAACTCTGGTTTACACCACCAACTGCTAACAAAGCTGTCAAAATGGAAAACGGTCCAGCTGCAAAGCATGGAAGAAATCTCTTATTTGGAATCTGAATATGTGACAGAAAAAAAAAAACCTGCTTATTTATAACCTCCCATTGCTTTCTAAGACTTGTGACTTGTGCTTAACTA---TGGGGTCTTT------TGTTTG---CTGAGTTTTC---------ACCCAGAAAAATCA---TCATTTTTAATCT----AATGCTCTCTGGCATTCTA-AACCCAGCGGCAGGAGAGGGTTCAGGGTGCTGAAGATGGAAACAAGACAGACCTCAATGGCTTTGACCTGGAGAGAGGAGAGAAATAAGTGGTAGGGGGGTGAGGAATGAAAAATTCAAAGGAGTCCAAAAGACCAGGCAGTGACTGAGAGAGCTG------------------------------------------------------------------------------------------------------------------------AAGAGAGAGCAGCCCAGAGTCAGCAAGGTAAGGTGAAATCA---------------------TGCAGTTGGGGTCTTTGAAAACAAATTCTGAGATACGTTCCATCTGCACTCTGGGTCTCAGCGTAACCAGAATGTCTTTGGAGAACTC-ACTCCTGGGTTTGGTGAATGAAGG---TGTGTGAGAGAGGTCAAAGAAACTCACAAAAGAACAGGGAGAACGTAGGTATTATTTGTGAATATCAGGGGAAAGATATAAAAATACCAATGAAGAAAGCAGATGACTTGGATAAATCGACTAGTTTTTTTCTG------AATATCA--TTCACTAAACACAACTTGAAGGACCCATAAACATACACACAG---TGGAGATGCCT---GGCCTAATTTGTCC---------------------TGTTGCTAATT---ACATCCTGAC---CAAGTTACCCCAGCAGCAGAGAGTTCTAAGGCATCATGGATGAGAGAGTGGGAAACTGAAATATATCAAATCTAAAAGGAATAAT------------TT---GGGAGAGACAGAGTATTATTAGTTATATCTTGTTTTGCTATAGAAGGCTCAGATGGCCCCCATATAGGGTAGTGGTAGAAAACTGAGATTGACATTAACATAAAATTAGAAAAAAAATTTAGCAACTAGCTATGCCTGTCGACAGAAAT--TCCTAGGAGGCCATAAAAGACCATCCAAGCAAACACTGAGTATTTATGTCATCATTGCTC
s HiC_scaffold_1 136431582 2259 + 233722169 TTCAAATAACTTCATAtcatatt--------tgagaaattatttttaaaaaatct--ttgctttTCAGTAGAAATGGATGCAGAAATAGAGATTTACTTTGAAAGAGACCAT--TTGGAATT-TGTCTCACTTTTCTTTAGTATCGTGATGCATGTATGAAAATTCTGATGCAGTTATCTGCATCATTTCCA--TTTGTAGGGTTTATATTCTGACTTGTCTGAATGTCTTTGAAACAGTGTAACAACTGTTCTTGTATTAtaaggtttgttttgtttattgttgcTTTCTCCAATTTCTGGAGAATTTTGAGTTATAAAATAGTTCTACTCAATACAAAGTTTAAAG-CAGTTTATAAGTCTCTGAGAAAGAGGCAAGGCATAATGAT--CAATTTTCAGGTTTTATGAATCAAAACATGAAAGCTTTGCATTTATTCATATCTACAAGTAtcattttcaacatttttcaaTAGTTAGATTCTTTGTTGTTTGA--GAGGTCCAACAGAAAATAGTGCGAGAGGGTGTT-------------TTATCCTGTCCTGGTGAATATTGAAAGAAAGTCATTCTTTTATACAAAGTCAGTGGAATTAGCTTGCTGCAGCTGCAGTGACTCAAATCTCAGAAAGAGGACAACTc-tatatttaatgttttga-aCTGAGATTAAATGTAATCTCTGTAGGTTAGAC---TTTAAAGCCCAAATCAAGGGGGAACAGGATAAGTATGGATGTACTTGggttt-------------aaaaaatcagtttcaaaGTGCA---TAATGACAGCAATTGACATAAAAATTGAGCGAACTacacaa-caataaaatgaatcaaaccaTTACTTAGTTAT-GGAATATCAAGGTCAGTTGTAGAATAAAAAACCCCATTG-TTTCTTCACTGATCAGATTGCATCATCTGAATTTTTTATGTTGTCATTGGTGACACCAGGGTACCCCAGACTAACAACTTCCTGGACAGCCGGTCTACAAGAGGTGTTAAAAAT-CATTCCCTGGAAATGGTC---AGCAATGTGGTTCTAGTTAAGTCTGGTTTCTACCAGCAAATGCTAACATAACTGTCAAGAGGGAAAACGATCCAGCTCCAGAGCATATaagaaattctttattttgaatttgaacATGTGACAGAGCTAGTAG----TTCTCTGGCGAAATCTT---TTGTTGTATAAGTTTTTATGTTTATGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGCCTTAGCTTTCGTGTGTCGGACTTATTAAAGCTACTTTCGTTTATGATTTCTACCATG-TCTAGAGTTTTCTACAAAACAGTAGTGCGCAAGGGTGCAGAGGGTTGGACACTGAGGCAAGGCAGAACTCCACTGCTTTCA-GTAAAGAAGGGAGAGAGCCTTGTGAGACAGGGGtaagaaa--gaaaactcagaagaaGAGGGAAAAGCAGGCAAGGGCCAAGAAAtctgttatctttttttgttttcgttttggttttggtacgggggatcaaactcacaaccatgtgcttacaaagcaagtgcttatgccgctgagctaaacccccacccAGGGCCAAGAAATCTGAAAAAAGagggcaa---agagagagagaggtaaaaTGATATCAGCAAGGTAAAGAGACAGCTTTTCTAACTGGGATTTTGGAAATGAAATTCTATGGTGTGTTCAATTTGTACTCTGTCTTTCC-TGTAACCAGCACATCTTTGAGAAATTCGACACTTCATTTTGATGGATGTAGGTTATGTTAGGAAGATGCCAGGGAGGAGTATAAAATGAcaattgtaa--taaattttatttccaaata------------------------aaagcaaaaaatacacAATCTATATTAATTGATATGTTTCTCCCTGTCTCACTATATCAGctttatcaa----tattttaagaaaaaaaaatcagatgctcAGTCATAGGTATGCCTATGGTGCCAACCTGTACCCGTGgtcacataaaataatatttggcaAACTGAAACACTTTGAAAAGAAGGCTATCTCACACATAGAAGGGTTTAAAAAATGTTAGTTTAGGGAACAG-----TGAAGGACATCAACTCTGAGAGTAAGAATGAGAATCGTGTATTTGAGGAAAGGATGGAGTCTACATAGGTTTGTGTTACATTATTATAGAAGACTGAACTTGGACGGAAGGCTGATAGTCATAGGAAAGTGAATCTGGGTTTAATATG----TGAAAGTACTCTTTAGCAACTAGCTCTGTCCAACAGTAGTAGTTATTTTGGGAGGTCAC-TGAGATCATTCAAACATATGTCCCTCATTCATGCCGCAATTATTC

a score=66606
s chr3           149843958 2347 + 160039680 CTAGATCATCTTGCCTCTATAGTCAGTAGGTTTTGACAACCATACCTTTCCT---TATTCTTTTGTCTATTAATGACTTTGAGTAATTCAGAGAGAA-----ATTCTCTCTGTATCATGGAATTCACAGGAAACAACAGACTCTCACATTCCAGCCAGTTATGGTAAGCTTGTTTACATCATCATAAATTTCCAAATTCTAATTAGTTTC----ACATTTTTAAAACAAGAGTCACAATCATATATAGAATGAAATATGATTTAATATACTACCAGCCATCATAAAGAAGAGGGAAAAGTAATAAAAAATCTTAAAAAATCTGATAATTTCAGAGACTGTATGATTTAATTTAGT----AATTTATATGAAGGGGAAAGCCAGGGCAGGAAAGCTAGGAGATAAAGGGTTGGAGAGAAGAGATAAAGGGG-AGAGGAGACAGAAGACTGGGCAATAagagagagagagagagagagagagagagagagagagagagagaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCCATTTCCCAGATCAACACCTCTCAACAGGATGCCTGGAACAGCA-----------------------------CAGTTATTGGAAAAAGGCCAAGGCAAGA-AGGACCTTGAGAAAAACCAGCCCCTAAAATTCTGACTTGCAGGATTATGAAACTCCAAAAATACACAAGGCTGTGAGGACCACCACCTACATTTGCAATGCTTTACAAGTTAAAAATGTCACAGCACATAAAAATAGGTGGCTTTTGTTCCTCCACCCTTCTGGACTGGTGGTCTGAGGTTTAGCTTGTAGAGCCAGAGGACCACTGGAGTTTGAATTGCCTGAATATG------TGGAAGGAAGGAAAGAAGGAAGCAACAAGCTAGATATCAACCAATACTGtttattttttgtcc---------------cttttttttttttttttttttttttAAGTAGGAAAATAGGAGAGCT--CGTTGCTTTCAGGAAGGGCTGTAATCA-TGCTCTCAGTTCCCAAGTGTTCCGATG---------GTTATAATTCCTCAAGGGGCTTGATACTCTGCTTTTCATATTGATCAACCAACACACAaaaacaaaataaaacaaaacaaaCAAACAAACAACAAACAACTTTTTTTAGGCCATCTAGAAAAAGCAAAAGACAGAACAACCCCGCACAGCATCTGCAGTCTACACTGATTGCTG-AGGTTGTCCGGAAAGCCTGGGGGCGGCTTGAAAGTGTTGGCACTCCTTTAGCCCAG-----TAGCTCCT-GCCGAAAAGC-TCCAGCTTTGATCAAATTCACACAAACAAAACGGGCTCTCTTCCAACCTGCTCTCATTCTCTGCGCA----GCCCGGTTCGTTTTCTCTAGA---TCTGCTTCACAGTCAGTCCCGGGGCATTAGCAAACTCCAAAGGTGTCCCAGGCATATGGCAAACCCCAGGCTCTCCGTGCAGGGGCTGGCTTTCAGTGATTCT-----------ATTTCGCATGGAAACCCAGCTGGTGATTCCCCGAGCCCAGCAGCTCTCAACTTTTCTCCAAATGACCCAGGAGTGGATTTTCCTGTTTGAGGATTACCCTCTCCGACAAAGGCTCAGCTTCTGTTGTCCTGACCCTCTGGTCACCTCAGCATCCTGGGG--CTGTCTTTGGAAAGAGCCCATGC-CCTTGCCCTGGCGCT---GCAGCCTGGCTGAGGCCAGGTGGTTCTGCAGGAGCAGGTGAAAACGACCCATTAGTGGAAACAGAAACACATTTTTAAACTAGGCTCATATGTTCCAGTCACCACTGAAGGTTTTTATTTCCTCTTTGAAT--------TGTTTTCTTTTTAACTTGTGGTTTTCCTCTTAACCCCGACGTTGGTTCATGTAATCAAAAAATTATCCATAACGGAGAGTTGAAGGGGTCTTCTAAAAAAAATTACATTCTATCTGGGGGAAATGCTAAGAGAC-CCTTTGAAGTCTTGAAAACATCTGGGGTAGCCTAAATGTTTCCACACAGTGTAATTGAATAACGACTTATCCTTCTCTGTCCACTTCCTTCTTTTTTTTCTCACTTTGTCTAGGGAAGGGCACTTCTCCCTGCCAGGAACATTATCTGCCCCTTCTTTTGTTAAAT-TCTTTCAGGAAACTACCAAAAAGGATGCCTGGAACCTGACTAAGTTCTTGCTCACAAGCATCACACGGTGCCACCTATTTTAAAAACACAGATATTACAGCCATTGTCATTAATTATTAAGTGTGTAGAAATTACGAAAACCT----TTATG-CCACCTCT-----TTGGTCAGGGTTAAGCTGCCTGGTATTGTGCCCAGCTTTCCTCCTGTGTGTTTTG-GGGCAGCAGAATTGGTGGCCCACAGCTGTGGCATTTGATAAATATTTACTGA---TATGAAGCTGATA-------AGAGGGCTGGAGAGCT
s HiC_scaffold_1 136433853 2344 + 233722169 CTGGACCACATATCCTCTAGACTTAGTGGAGGTCAA-----ATTCTCCTGCTGGCTGTTCTCTCATCTGGCAGTGAACTTCTTCAGTTCTGAGAAAATAAGTAATTTAT-TGTGTCACAGGATATAAAGGCAAGTGTAGATTCTCACATTCCAACCAGTTGTATTGTCATCATTTAGGGACTCCTAAACAACACGAGTTTAAGTCACttcctaaatattttgaaaacataattcaCAATCAAATAT-GTATTAAGTATGGTTTAATCTACCACTGGCTATCATAAATAACAGGGAAGggcaaataaattttatttgaaat---ataatttcaaagaattgAAGATCATGTTTAGTTTTAGAAACATGTGAAGGAGAAAATCAGGAGAGGCAAAGTAAAAGACaatcaaatacaaaaaagaaaaaaaaaagtggaggaaaaagca-----------aagaaaaaaggagaaa-atagaaacagaGAGAAGGCAAGAGAGCAGGTAGGATCAAGTGTGAATGCGTGTGTGT----------TCTCTTTCCCATTCCAATGCCTTTCAGCAGGACGACTGGAAGAGCAgtgagaaagatttattttttaaacatgtacGGTTGTGGAGAAAAGGCCATGACATGCCAAAATGCTGAAAAAAAGCAGCCCCTGAA-CTCTGACTAGAAGGATTATGGAATTCCAAAAATACACCAGACTGTGAGAACTACCACCTACATTTGCAATGTTTTACAAGTTAAAAATGTCACAGtgcataaaaatag---------ttttttttaccCCTGTGGACTGGTGGTTGGTGGTTTAGCTTGAGAAACCAGAGGAGTG-TGGTGGTAGTTTGGTCTGAATACGCATTCATGGCCTggagataaaatgaaa--aataactt--ccTTCAGAC--------TTTCTTGGTGTCCGGGAAACATACTCAGCTTTCTGTTTCCCTCCAAGtcttttagaaaggaaaaaacgGGAAATAGCTCTGTCTTCAGACATGCTTGTAATCAGtcccctcaaactcacagtgatt--atgTCAGTTTTTGTTGTGATGACACAAAGG-----------TGTTTTTcaggttatt------------aaaaaaaaaaaaaaa--------------------------------------ctagctagGAAAAGTAAAACATGAAACAATGTTTGAGAATTCCTGAAGAAGAGACTGATTACTATAAATTCTCTGTGAAACCTGCCCA-AGTTTAAAGGGCTTAGTTTTTCCTGCGCTCAGCACATTAGCTCCCGGTTGAAAAGCTTCCAGCtttgatcacacacacacaaacaaaagcgGCTCGCTTCCAATCTCCTTGCATTCTCTGTTCAGAGCGCTCTGGTTGTCTCTTGTGGATCTTCTACTTCA----CAGTCCTGAGGCATTAGTCAACACCAAAGGTGTCCTAAACATATGGCTAACCACAAGGTGTGCGTGTGGGGCTTGGCTTTGAGTGTATCTGATGATTACACATTCCAAATAGGGACCCAGCTGGTGATTCCCTGCGCCTTGCAG-TCTCCATTTGGCTTCAAATGATCGGGGAGTGGATATTCCTGTCTGAGGATTACCCATTTCTGTAATGGCTCAGCTTCTGTTGCTTTGACCCTTTGGTCACCTCTGCTTTCTGGGGATCGAGCTGCAGGGGTAACTCATTTGGATTTTTCAGGTGCTGTGGCAGCCCAGCTG-GGCCAGGTGGCCCCACAGGAGCAGGTGAAAATGACCCATTAGCAGaaacagaaacatatttttaaac-aggCTCTTATGTTCTGGTCATCGCCGAAGGTTTTCACTTcctccttcaatttcttttcttttctttttttaacttgtaGTTTTCCTTTTAACCCTGACATTGGTTCGTGTAATAAAAAATTTGTCAATAATGGGGAATTGAAGGGctcattt---taattttgcattctgTCAGAGGGAAAAGCTATGAAACTTCTTTGAAGTTTT-AAAACATCTGGAGTAGACTAAATGTTTCCACATAGAGTGACTGAATCACAAGTTATCTTTCTCTGTCC---CCCTTCCTGCCCCCCTTACTTTGTCTTTGAAGATACAGTTCTCCCTGCCAGGAACATTA--------TTCTTTTGCTaaatgtcttcccaaagcctaTCAAAACAGATGTCCTGAAGTTGGCTGTATCCATTT-----AGATTCTCACGCACCCATGTACCCTTGATATGCAGATCCTGTTACAATTATTGTTAATGGCCAAATGTGTCATAATTTAGCAGAAGTTATCTTACGTCCATCTCCCAAAGTAGACCAACTCTGAGTGGGTTGTGATGGTATTAATTGTGTTTCATGTGTATTAAATGAATGGCAGAATTCCTTGCCAAGGTTAgaggtatttaataaatatttgttaaatggaTAAGgtgaatatatgaataaatgactGAAGAGTT

a score=28474
s chr3           149846646 1911 + 160039680 TCTCTTTGCTGAACTATTTCATCAGTTTGTTGAAAATTTGAGATTCATTTTCAGGCTTTCCAGGAAAAATGGTAAAAAGAGGTGT--GTGTATAGCTTTTCAGAAAGTTTTaaactttagatctctgtttaaaaactgcacatgtgaatgaaatttgcatataatttcatgggttttataaagtgccttaagccaatttctggatctttggcttaataacccctgTGGTAAGGCATTATGAGGCCCC-TGACATAGCATTCCTTCACAGGACAGAACTGGCTTGGGACTCCCAGGTCAGATGAAAGCCAGCTTTGCTTGGCTATAGAGAGAAAACCACACtttctcatctgcggcactgttgatattttaagg-catataattctttgtagtcgcctctgccttgtgcattgtgggaagcttcccgcaagcatct--gtcctctctcttcaccaagaccatcggttactgcctccctggcccctcctaggcgttaggaatgcaaaaccctccagaa-------------cagtacaaaatccaccccctTTAAAACAGGCCAAGATGAGCTCAGCTGGAT-------TGAGATGGT--GTTTAAATA-TCTGTCATTGAAAATCATAATTTGAGGTTTGTAGCTACAGGAAAGTTTATATTTATTGAGCTCTGGAGTCTTTAGGGCTGGTCAGTAAAAGGCACAGATTTTTGGCAGCTATTAGGCTGACCAACTTTGACTTCGTCTCCAGCACTAAGCTAGAGAAAGGTGAGGGGGATGGGTGGGTGCGGCTATGCTCACAAATGCTTCTAGCCCACAGGAACCACAGGAACATGCTTCAGACTTAATA---AATTCTGCTTT------GAAGAGTAACCCTTCACTTGTACTTCACTGT--CCTTTATAACTCAGGTGATAACTTGGCTATAAACAA-CTAAGTCTTCCATGTCATTATCTTCTGACTCTCATCATAAAAATACAGGTCAAAAGGGATGGATTT--TAGAACTGAGAGTCAGGGGGTGTCAGAAGGCTGAGAACCTAGAAGGTCCATGA---------------AGTCTGAACCATCTGGCACT---GGAGAAGAGTGGAACAAAGAAAGGGTGGGGAAGAACTTTCATACCATGGTCC---------CCTTTGCACCTCTCTTGG------------GCTCAGAAATACAGGAGGAG------------------------TGACCTGCCTCCACATTGACATTCT----------------------AACTGGAGCAATTC-----CACAGTTTCTTCCTCCATT--------CCCTCGTAGCtcccctct--------------------------------------cttctctctcctt------attccaat----------------------------------------------------------------------------------------tttt----catcttttttcctttcccct-------------------ttctatctct----gagcttt---------ccttttcctgctt-------atccttttat--------ttttttAAAGTGACACATAAAAATATGT---GTGTATAA---AATATAATAATTAAGTC-----CCCAAGAACCTCCATACTCTCCTTCTAACCATGGCCAGATAATCAAAATTAC-CCTGTGATTAGCCACCTTCCTATAG-CCCACCTCTCTCTAGAGGCAGCAATTATTCTA-------------CATGTCTTGCCTTTTAAAAATTCATGTGCACACATCTATTTATATGAATATGTAAACATCTAATCAACAACAACTAGACGCCTTGGGTAGGAGCCATTCAAACACATGGATAGGATCAGTGGAATCACCAAATCTCT-TTAAGTGAAATTCACTCACCCCCAAAGAAAGCCCCGATTACCCAGTAAGTACCCGCAGAGGATACACAATGTTCCATCTTGAAAGAACGCACAAATGAGAAAACT--atattatgtccctaggagtcacttatgttttggcaaa-------------------tggctgaagggca-----ttttatggttctacagcacagtgctctgtgaatatcccacatttattcagccttttatccttgtcattttataattggattgttttcactttttcctattgaagtatgctgttatgaaca-ttgtgtacaagtttctggtgtcgagaaatatgtA-----------CCAGATGTATTTTTA
s HiC_scaffold_1 136437201 2160 + 233722169 TTCCTTTTCTAAAGAGAATCACTGCTTTGTTGAAAACTTTAGCTACATTAACAAATGT---agggaaaataatgaaa-gagttATAAGTCTCTGGCCTTTCAAAAAGTTTTAA-CTTTAGGCTAGTTTTTTCTAACCGCACATATGAATGAAATTTGCATATAATTTCATGGGTTTTATAAAGTGCCTTAAGCCAATTTATGGTTATTTAGCTTAATAACCCCTCCAGTAAAATATTATGAGTCCCCATGACAAAAAATTCCTCTACAGTACACAGCTGGCTTGGGCATCCCGCGTCAGATGAAAGCCAGC--------------------AAATCAGGAGTCTGCACCAGCAGCACTGGCAGCATTTTAAGGTCATTTCATCCTTTGTTGTTGGGTCTGTTCTGTGCATTATAGGAAG-TTACAGCAGGCACCCCGGTCCCCATTGTCCATAGATGCCAGTGCTTATTACCTCCCCACCCCC-----AGTTGTGAGACTACAAATGTCTCTACAACTGCCATGTCTCTCAAGGGAAaattcccccatctgaaaaca-GCTGAGCTGAACCTGACAGGATACCAGGGCAGAATGCTTAACTTAAGTACTCCATCACTGA-------TATTTGAGATTTCAGGATTTATGAATGTTTGGGTTTATTGAGCCTTTAAAACTT---GACTTTCCAGAGTGAGGTGTGAGTCCTTGGCAGCTGCCACACtgattaattttgatttattCCCCAATGGCAGACTA-AGTAAGGatagaggaagggctgggtgcaAATATGCTCACA-----TTTTA--CCACTTAGAGTTAGTCAGCAAGTTTCTCTCTTAGAATGTAGCCCTCCTTTCCAAAGAAAGATTAAGCC-ACATTTGCACCCAATTATGAATTTCCTAATTAGG-------CATTCCTAAAAAAAGTTTGAACTTTTTAGAACACTAGGTTTTGATTCAGTCTATGAAGA--------AAAAAGGAGGGCTGTGCTACTGTTTAGAGCCACAGGACATCTAGGGGCTGTAAA-CTGAAAGGCCCCTGATCTCACCTCATCTGCAatcttgtgtgtgtgttactTCAGGAGATGACTGACAGAGAGATGAAGTGATGGA------TTCCAccatcttccttcccttttcctctgCAATACTcccagttttataatttttctgaggAATAAGAGAGGAAATAAGAATATGTAGTTATGTGAATTAATCTCTTTCACTATTCAAGCTCTCAGACCCTTATTTTATAGTTGAAAACAGCACAGCTCAGAAATACAGTTATACTTTGGATTTTGACTGGCCCTCTAAATCCTCATGTGTTGATAGGTGAGGGTTTTGGAAAGTGACTGAGTCAGGCTATACTCATCTTTGGATAAATCCAATGCGTTGGGAGCTGAAAGTGCTATTGGCAACCAGAAGTCGGTCAAGCAGATGAGTCACTGGTGttatgacctggaagggtgaaCCCTTCTTTTGGAGCCTCCTTTTGCACTGCTCCTGGTCACCAGGATGAGAGCAGTGTACCTCTGCCAGACCCTTCCACCGTGGCCcttgcctgccttggagccagctggctatgAACGGaatcctctaaaaccatgagccaaaataaacctagtGTATTAAGTAATAGACTATTCAACTTGGTAACGCAGGTATTTCCA----------------------AGATAAATGAAGCTACTCTTGTAGTTTTCCCACTTCTTATAATCCTACGTCTTTCTTGAGATAATCAACATTATAATTTTGCCCTATCTTTGccttaccttttaaaaatttatgtaggtatatatatatatattagtgtgtaaatgtataat-aaaaataactagaaaCCTTGGGCAGAATCCATTTAA--ACATGAGTGAGATATGTGGAATTGCCA---CTCTCTTAAATGAAATTCACttaattcaaaagaaatctctcatTCCCAGACAAATA----------------------TCATTTTTGAAATGCTCACAAATAGTAATGCCCAGAATTATGTTCTTAGGAGTCACTTATATTTTGGCAAATATATAGCCATTTATCTTTTGGCTAAAGGTCATTCATTTTTATGGTTCCAAAACATGCCATCCTGTGCTTGTTCCATATTTATTAAATCATTCA------TCATTAGgtaattaa---gtttttattttttctactccAAA--------TATGAACATTTGTCTCCAAGTTTTTTGACTCAAGAAATATATATACCAGATATTCCAGATACATTTTTA

a score=13413
s chr3           149850153 573 + 160039680 TAGTGAGTAAAGAAGGTTGCTAATCTGTTGAGGTCTTAGAAACAAGTATATTCTGGAGTTATGTATCACTCTGAAGAG-----------------TGAATGTGCATGGCCAGCGGA-----------CTGCAGGCTCTGGTTCCTGCAGCCAGAGAGCAGCACTTGGGCTGATCCAGTTTGGAGGCTGGCTCAGATGTACAAGGTAGAAATTAGTCTCT-TTAGTAGAATG-AGACTTGCAATGGGGAAGTTGAAGGCCCCAATTCTT-----TTT-----TCTGGGAGCAAATGAGCTATATTTATCTCTCCCATGTTGCCAGCCTTCTAATA----------------------ATTTAAAATTGATTAGAGTTAATAACAAAATCCCCAAGTAATCCAAGTCCCTAGGAAGCTGGGCCTGAG----CTTGCTTCTGAGTGCCAAGTCTGAGGCAAGTCTGTTTAAATTCATTTACACCTTGGGGATAAGAGGCTTTCTGGGGGCTTGGAGAATGGCACTTATATGATGCTGAAGACTACCTCAACTTACTCTTTGCATGTTAGATGGAGA-----AATATCATCTC---ATCTCAAGTGGACAGAGAAGGTGGATTACGGCTCCTGCTCACTGTAGGAGTACAG
s HiC_scaffold_1 136439955 627 + 233722169 TAGTAAGTATGAAAGATATTTCAGTTTGCAAGAAGTTGAAAATAAAGGTGTGTCAGAAATATGCA-CATTTTTCAGAGGAAGtagtgtgcgtgcatgcgtgtgtgtggggggtggggtggggggaagctAGAGATCCTGTTTTACATAGCCAGATGGTAGCACCTGGTCAATTAAATTTTGGAGACGAGACCAGATGTATGGGGCAGAAACTGGTCTCTCTTGGCAGGATGGAGACTTACAAT-----------AGGCcctaagttttataattttatccatCTGAAACCAAATCAACTGTATTTATCTTCCCCAAATTTCCCAATCTATGTTATCTCCCCACTGTGCTGATCTATATTTAAA--TGATTAGAGTTAGAAACAAAATCCCCAAGTAACCAAAACCCCCAAGTAACCAGGCCTTTGCTTACTTACTTCTTCCTGCCAACTCTAAAGAaag--tatttaaattaatttacgCCTCAGGGACAGGAGCTTTATTTGGGGCACACGGAATTCCATTTACATGAAGCTGGGGA----TTCAGTGCACCTCATCCATgtgggaaagagaagaagaacAGCCTTTTACAATCACCAAGAGACAGAAAACTTGGGCTGTAGTCACTGCTCATTGAAGAAGTAGAG

a score=110650
s chr3           149861619 7413 + 160039680 [encoded data, 8095 characters]
s HiC_scaffold_1 136450426 7392 + 233722169 [encoded data, 8095 characters]

a score=22931
s chr3           149898710 1193 + 160039680 ATTGACTGGGTGTGGTTGAGATAGTCACAGG---AAGGAAACTATGGGGACTAAGAATTTTGTCTTTAC-TTTGGCAGAGAGAGGAAACAGTGTCAATCATACCTGCTGTGAAAATGA-----------AACATTGTTCAGTTTTCCAAGACTTTGAAGAATCCCTAAATAGGAGCAAATAATAACACA-----GCAAGTATAAACA-ATATTGTAAATCATATGGATAGG------------TATAACTCAG--------------------------GATATAACATCCAT-----ATAC---------ATATTTTTAATAAATCTCTCTTGAAATTAGAAA----------AGATGTAT---------------ACAGCCAAAAT--GACGTCAGTGTTTCAATATTTAACCTTGTCCATGTCACACCTGTTT--------------TCCTG-GGAAACATAATAAA-ATCTTTGCATTAATAATATTCTTCAT--ATTTTAAGTAACAAAACTTGAAGTT--GCTTCTATGGTAATAGTTTTCTAGAATTACACCCAAGAAAGT-----CTATGAGCTTGTTA----TGAAGTGTTGAGCCTCTTAAAATTTAAACATTTCGTCAATGCATTTAAACATACATAGAAATTGAAATTCATCTAAAAA-------TGTTTTTAATAGTTAGTACCATGAGAGAAAGTTAAAATTAAAATGTTAGGCAAATTGCAAATATCTTTCACAATAAATAACTCTTTAGTTTATTAATGCTAAGGACTTGTATAAAATAATTTATGTATCAATGACTTCATAGAAGAGAGACACTGAGTAT------CCTGAATTCAGATTCCTGAACACAGAGCAGAACAAAACCCGTTAGGATTAA-ATACTTGACCTCAGAAGTGGGATG--TTTCTGCATTCATTATGTGTATTCCCACGTTTCTATTGAGGGaaatattaaaatatttttagatttttattGAATTGATAAATGAGATGTTTGTAGTTCTCT-GATCGAGTTAGAAAAAGCAAATGTCACACTAGAAGGTAAACACTGAGGGAGCACTGTAATCAAATATGGTGTGTACAGATATTTACAAAGATGTAATGTATTCCTTTTCAAAACCCAAATCTGATACTTTCAAGGGAAGTTTTTTTCTGCCCCATCTCCCGTG---CTTGCCTAGC-----------------CACTCCCTCCTTTCTTCCCAGCAACCTGCTCTACCTTTTGATTGTCCTTTCCCTGTGTTGTAAGCATGTTTTAACAGTCTCTTTGTTA--GTCACAGCAAACAGAAACTTTCAGAATCTCT--TTCCTTTCTTTTTCTTCTTTGTT
s HiC_scaffold_1 136473242 1316 + 233722169 ATTGATCAGGTACGAACGAGAGAGG-ATAGGTGAAGGAAAACTGTGG------AGAACTTTACACTTACCTTTCTTTCAGAGTGAAAAACGTGCAAATCATGAGTGCCATGAAAATGCTTTCAAAGTGCAATGTTGtccaaatttccaaatatttggttAATTTCTAGATATAATCTGAAACTGTCAAAAGAATGCAAGTGGGAATGTATATTGTAGAATACTTCTAAAAGGTGCTTGGGCTATATAGCTCAGCTGTATaagcacctggcaagcacaaggttgtgagttctatccctggtaccaagagaaaataaattttaaaaatacttcttgtAGGTAAAACTATCATTCACACATATATCTTTTTTATCAACAAATATCTAGAATTTATCTTCCGAGTGGCAGTAT----CAGTGTTAAAATTACATATGATTAAAATTCTATAAATCCCTACTGAGACATTATAAATGTTTTTACAG-GataatattctgtattacttctcaGTAACGGAATGTTTAATTCAAATGCTAAAGTTAAATTTTTTCAGAATTGTACCTGAGAAATAAGATATTATTAGCTTGTTAAAATTCAAGTGTTAAGTCACTCTAAA---AGATAGTT--TAAAAGTATTTGCTC-TGTGTGTGAAtc--agttcatttaaaaaatatctacttCTCCAACAGT-AGTATAATGagag----ttaaaattaaaatgttaggtAAATAGAAAACTTTTAGCA-AATAAACAATTCTTGAGTA-ACTGATATTTaatatatctataaaataaattctgtagGAATTGCTCCATAGAAAAGAAATTCTTGCTATAAAATGCTGAAGCTGAGGAGTTTGAAACCAGAGCA-AGCAAACCTCAGCAGTATTGACACATCTGGCCACAAAAG-GGGATGCATTAATGAATCCACTGGATGTATGTCCTCAAATTTGttgaggaaaatattaaaatatttttagatttttattgaaTTGATAAATAAGATGTTTGTGTTTCTCCCTACTGAGTCAGAGAAAGCAAATGTCACATGAAAATGTAAACACTGATAAAGCATCATACTCAAACACGATGTGTACAGCTATTTACAAAGATTTAATGTATTCCTTTTAGAAACCAAAATTCAATAATGTCACTGGA------TCCCTGCACCTGCTCCCAAGCCACTTGCTAAACATTATGCACCCCACtattattcttttccttcttctcaatggctt--tctgtctttt-------ttcttcatgGAATTTGAGTACATTTTAGCA---TATTTGTTCATGTTAGACTAGATAGTGAGTTCTAGCAACTATTGTccctttcattctatttttagtt

a score=43413
s chr3           149901201 1574 + 160039680 AAGTAAGTATGATAGAAGTGTT-GTGAAGT-CATGGACATCACCAACAACTGCACTGGCCATATTTCAGAAATGGCCATT---ATAAGC-AAATCTGTGAGACTT--CCTGAGAATAGTGGATGAAGGAAGTTACTGAAAAGGGGTCGAGGGCCCCTTGAAATTGATAGGTCATCATTTCCCCTCCATTACTGC--TGCCCATTTCTATCCTTT------GCATTTACAAGA----AAGATTTAACAAACAGGATGCGTTTAACATTAATCACATCATTCTTGTAAAATGTTGATTATAGAGTTTGCAGACGCAT--GTTACAGATAATTCATAT--TATAGTTTACAGGGGATTATCAGTGTGAAT-TAAAATCATTTCCATCA--CAATTAGTGGCATTCAATCAGACGTCCCTAAGAGAAAACTAAGCAATA------------------TATTTAAAACTTAGTTTTTAAAAAATAATGAAATAACTATTTAAGACTAGTAAGCTG-GGCGTGAATGGAA------------AAATCCTACCTCAGTATTTTGGTAGTGGAGTGACAGTTAAGCAAAGGAGACAGAGCACCAGCTAATTACTGTTGTATAATGCAAACTAAGATTCCAGATTACTAATGCTGGCAGCACACACGAGTAGCTGCATCTCTCCACCTACAGTGCAGCACACCATCAGAGAACAAGAGATGAATCTTAAATGGATGGCTAATACTCCATCTTACAAACTTAACAGATTATGACATCAGGCTGATACCCAATCCATCTGTCAGCCGTGCAGGACAGAGCACATATTGTCACGGTGATTAGGCCAGGTGGCACCTCATTTGATATCACAGCTGTGCTGAACTTTCACTCAGAAACCCAAAACCATGTGAAACATTCCTTGTTTGGGGTCACGCTG-GAAAGAAAGAAGAGCAGCTGGCATGGATTCTCAACACATCTCATGTGGAGATTCCTTCGTGAATATTAAAAAATAAAACCTTTCTGTAGTGTGTCATGGGGAATGAAGATGTAAAACCTGGGGTTAGCTATTTGCT---------TTAATATGATATAGTTTTTGCATTTGTGATCAGGTCACCCACTTATACAAAGCAAGAGGTTACTATGGCATGT-GTCAATATGTTACCCAATCTCATTTTGAGATTCTT-------AATATATCTTCTAGTGTT--AACAGTGGTCAGCTGTTAATTAATCTGA-----------------AGGTTATGAAATTAT---ATTTCTAAGTCCTGTGTCCCTACACT------------CTTATTTAA-CTGCCTTTCTAAAGACAATAG------------------TGGTTACAAATGAACAAATGAATTCATAAAATCTTCCTTGAGATTATGCCTTCAGGTTGCAAGGTAGAC--TGACTCCCCAAGGGCTGTCAAAGGAGCATCACAGAACAGTAGCAGTCAAATTTGTTC---AGTTGCATTTTGTAAATTTTACCTTGGTCCCCTT--AGAAGGAATTGTAAAGCTCAGGTGCTCCCTTAGATGAGGATAGAAGTTCAGT-TTGGATTTCATTGTTCCCCCCACTTTTAGAAGAC-----------AAGGCCAGCCTGCATGGCCTTATATCATGGTCACCAGCCATTAGAACAAATTTTCGCTCTATATGAAAATATACTGTAGGAAATTTAAAGCCAAGGTAAAC
s HiC_scaffold_1 136479912 1675 + 233722169 AAGTAACAATGAAAGAAGGGTTTGGGAAATACATTAGTCTAATCAACAGACAGACTTACTGTGCTTGAAGAATTGCTGTTTGCGTGAGTTAAAATGGTGGGGTTTTTCCCAAGGGCAATGGAGGAA--AAGGTAAATTATAAAGACAGAAGGCTCGTTGAAG--GCTGAG--ATAATTTCCTATTTATCtctacctttccattttctgtcctTTTACGTTGCAATTCTGAGACATAAATGCTTGATGAA----------TTATCACTAATCATATTGTCCTT-TAAAATGGTGACTATAGATATTATAGGCATATACGTtactaataatttttataatatattttaagtggGAGCTTAGAGGCAAGCACAAAATCATTTCAACTATGCAATTATTGAGACTCAGTTAAGTGCTCTAAAGAGAAAACGAAGCAACACACATTTAAGAAAATCGGTATGtagaatctgaattttaaaacagaaagaagtaaATGTTTAAGCACA-TAATCTGCTTTATGAATGTCATAGTATTTGTTAAAATTCCACATACACATTTCTGTAGTGGAGTGACAGTTCACCAAATGAATTAGAGCACCATGTAATTATCTTTAAGTAATGCAAACTAAGATCCCATATGAGTAGTGATAGTGGCATCTAATGATAGTGTCATCTCTCCATTTAGGGTGCAGCATGCCATCAGAGAAGATGAGATGAATCCTAAATGGGTGGGTAACGCTCCATATTACAGACTTAACAGATTATGACATTGGGCTGATACCCAATCCATCTGTTAGCTGTGCAGGACAGAGGACATATTGTTACGGTGATGGGGCCAGGTGGTACCTCATTTGATATCACAGCTGTGCTAAACTGCCACTCAGAAACCTAAAACCATGTGAAACATTCTTTGTTTGGGGtcacactgaaaaagaaagagcagCAGCTGGGATATATTCTTAACAAGTTCCATACAGAGATTCTtcagttgaaatt-aaaaataaagcgtTTTT-CAGTATGTCATGAGTAATGAAGATTTAAAGTGTAGGTTCCACTGTTGGCTTCCAGATTATTAAtatggtataatttttaaatttctggtcaGTTGACTCAGTCATGCAAAGCCAAAGGTTGTTAGGACATATAGGAAATCTATTACTCAACAAAATATTGAGATGATTCCTATAAAAAACATATTTCAGTTCCCGAGACATAGTATGCTCTTAATAAATATGATTAATTTCATTATTCTtgaattttgaaaatctctaattTCTGAGTCCCCTGTTTATATCTTATCCTATCTTTGCTTATTTAATTTAGCTTTTGTGATACAGCAGCATGTCACATACTGTATTTGAATGTAAATGCACATACAATATTGTGATACCTTCAGTCAGATTTTACCTTCTGGCTGAGACATAAAACGTGGTTGCCTTTGCCTTGAT-CAGGTGCACTACAGGTCACAGGAAGTCACAGCTGATctaaagttacattttaaaaattttgacagGGCACCTGTGCATAGGCAA----AAAGCTCAATGGATTT------TGAGG--GGAATTTTTGTGCTGGATTTCAGCGCTCTTC-----TGTGGAAGGCAGCCTTATGGAAAGCCCGGCCTGCATAACCTTCCTGGATGTTAGTTGTATATTGGAATAAGTT---GCcttacttaaaaacaaac------aaacaaacaaacaaaataaac

a score=17561
s chr3           149905951 483 + 160039680 tttaaaaaatgcataaaaaTACATACTCTCTATACATTCC-AACATCTAACTTC----TTCATGAATTTTGACTGTCTTCTCTAAACAG--TTTACTTCTATTCTCTATTGGCCTATGATGTCACCATGATGTATATT------------ATAATATGTTCTTGAGGGACAACTGGTTCAGACTAAACAAATCATCACCGATTGAAGCTACTTTTCTGCTCCAGTGTTCCAGACTTGAAGTGTTAAAAGGGTGTTGCTCACTGGCAAGTAGTTAGTTGAAGTAATTTTGTTACAAAATTTATGAAGTAGCATTTTGTAATTCAGTTTGCATGTTAAATCCTACTTGAGAAAGACTGCATGCATTTTGCTGTG-----GATTGATATGTTTTAAAATGAAGTTCTGAAATGTCGTCTTCACTTTTGTAATTCTGATGAATAGTTACTGAAATAATGTTCTGGTATACTCTTCCTT-----------------TAGAAAAGTACTTACTTTTagtt-taagagagaa
s HiC_scaffold_1 136482438 506 + 233722169 tttaaaaaa---ataagaa--------ctatgCACATTCTTAACgtttaaattcattttccaaaatagttaA--GTCTTCATGAAACAGAGGTTATTTTTATTCTCGATTGGACTAGATGGGCAGTAGGAAGTGTTTgccataaaaaaagataatatattttgtaGAGAGAATTAAATTAGGCTATTTAGATCTTCACCAAG-AAAGCCAGTCTTCAGTTTTTATGCTTCAGACTAGGAGAAATAAGAGGCTTTTGCTCACTGGCAAGAAGCT----GAagtaattttgttgtaaaatttataaagtaacattttgtaatttaatttgaATGTTAAATCCCA-TTGGAATAGATAGCATGTATTTTGCCATGTCTacaagtgatatttttaaaaatgaagttctgAAATGTCATCTGCACTTTTGTAATTCTGATGAATAGTTTTTGAAATCTTGTTCCAGTGTATTCTTccttacaaaaaaagagaaaacttaaaaGGCACTTATTCCTAGCTGTAAAAGATAA

a score=86883
s chr3           149914715 3381 + 160039680 AACAAAACATTAAAAATAAAACAACTTAAAAAGTCAAA----------GACATCCTTACAATGTGAGAACAGCTGCCTTTCTG-----TGGAAAAC-ATTGGTTGTGGCTGCTGATATAGTGTTCTTTCATA---CCAGAGAAA-CACATC---CCTCCATGACTATCTCTTTG--TCGTAGTTCTCTTTCTGTAGAAGTCCTTGCTTGTGTAGTGACATTTACTTAAGAGTGTGTTTCCAAAGACTTGTAGAATTATCACAATGAGAAAACTGTGGAATGGTTTTATGAGGCAATAACCCAGTTCTCTTATTAGTGAGCTCTAACCAGCCTTCAGCCTTATAGTTTGTCCACGCGGGAATCCAATTATGGCCTCATGAAACAGCTCGGTGCCCCTATTATGACTTAAATATAATTGTGTTTAAAGACCTTGTTGATTCCATTTAGCAGAATTCGTTTTTCATCTTATATCATCCTAGCAATGCCTTCTAATAACCTTGATGATATTTTGATGTGTGCCCAATTATATTTTCATGATGA-AAAGCAATGCTTT---TTAATGTCAAATTTCCAGTGGGCAAAAGTGTCTCTGGTCTTTCTTAGTTTAATGTTATACCTTATATTCTTTTTTCTCTCCAGAGATAATTTGTTTAAACTTAGTAAA-AGTTAATTAT-TTTTTATACTGACTAACATAGTGTGAAAATAA-----AAGAATTCTTTAATCTCATGTATTCATTATCTTTAAAGAAATTTCAACTGTGCCCATCTGTGTTTCAGTGGTATTCATTAAATATCATATATTCAAACATAAGATTATTATTTATATATCTAAATCCAAATTAAACCCTCTTCAGATTTGTTTGTAACTTTGCTCAAGTCAACCAATACACCGAACATTAGTTTCCTAATTTCTTTTGAAAGTG--GAAATAGCATGACAAATACAAGGTCACAGGGATTTATGTGGCATATGAGTAACTCTCTGTTGAGCTAGTCACTTGACTTGTATGCCTTGGTTATCAGTATTTCTTCTGatatataaataatatatgcgtaatagacaatataatattatgtgcacatatatt------taatatagactatatatacatatattataACTCATAAATGAGAGATGGTTGATAAGAGAAATCAGAGAGGAAATCTGGCCAGAGATATTTTTATAGCAATTAAGGAGTTACACAACAGGGAGAAAAATTATCATCTCCATATAACAAATTTCAACATTCAGAGAAGAAAATGAATAATTTGAGACTAAG----GATTCAGAGCACAGGATGGAGATAATTA--AATAGTCTCCAATTTTTTTTTGGCTTATTTGTAAAAAATATAATTGGTAGGATCCAGGGAATTTGGTTTTCTGTCTAATATTGTTATCAGTTTTATAGAATTGTTTTATTTATAAAATTCTTTATTGCATTATAGCAAGATCCGTGAATCTCA-TGAACACCACAAGTGGATCTTATACTTCCTTCTGTGAGCTGTGAGAAATTTTCTGGGTATGAAATCCA-TGATTG-----TCTCTTCTCAAGTGCATGG-TCATAATTATAACTCCAGGAGTCAAAGTTTGTTTTT------CTCACGATGGTGCATTTT-----AAGAAAGTTTATGAAATAAAACACCTCACATGCTCTGCTTCCTTTTTACTGTAAGAGCCTA--TATCACACAGGAGTAAATCTTGATTTTTTTTTTAAAG------------ATTTTG--ACTGAAAAATTTATCCTGACATTCCAAATGATGTGCCATTTTGAATTCTGCTAAACACAAGAGGTATTCTTTATCAATACGGGTGAAGTTCTGAAGGCATCTTGT--AGTCTGGTGTGTTTGACACTTCAATGGTTTGAGTGTTATTTGTGAGTTATTTTTAAATTTTATGGTTGATTAGAAGATAGTGTTCACTGAAATAAGACTGGTGTCAACTTGGCCTTTAAAATACGTTCATTAAGGACAGTCACAAGTTCATGGTCAATACATAACTAGTATTGACAGTATCAAACCTTTGGCTATTCTTACCCTTTCCATAATGGAGATTTTCAGTTATACTCAATAATGCTGTC-----CATCTAACTCAGTGTAAATTTTCCTTATAACTAATGAGGAAGAATATCCTTCTAGGACCGACTTTTAAAGGAAGCTTTTAA----------AGCCCCCTCCTAATTGAGGGAGGTCTTATAGAGGAGAGATTTCTAGACTAAAGATAGTGAAAGAA------GAGAAGACAATTGAAAATCCATTCTCTTACTTCCACATAAACATAGGGGCACTTTGCTAATCAACCTCACAGTATTTTTAGAGAAAATTTTTTCTTATGAACAAAAGGAACCAGAGTGAAAACTGCTCAGTTCATTGTATCACTCATTCCTCTTTTGACCCAGCACTACTAAG--GCTCTGAACTTTTATATGTTAATATTTT-CTGGTCCCTTGAAGAATGACCTC-AGAGAACTTCACAGGGATCCTTGCCATCTCTCTCTCAGGGGTGCTGTG-AAAATGTCCATTAACATTTATGGTGT-TATATGAATTCCTCAAATGAAAGACATTACATAAGAACAAAATaaacagttttaaaaacaacatttgaataatttagctataaaagaatcaaacacatatgcattggagttatgcaaacac-agcttggaattgagcattgaagttcttagctaaaactgttttaggttttatga---------actttaaaTAAGG-TTGATATATTCCATC-----------------TTTGCCAGCCTTTGATACTACATGTAAATATTACTTTATGGATATTCAGAAAAATTATTTAAAAACTATTCATATTTCTAATAATTATCTCACAAATCTCAGGAGAAGTTCATGTTGTTAATGAGATTTACTTCAAATCAAAATAAATTATTGG-----TTTCATTAAATACTAATTGCATATAGTGTTTTTTTATTTTCTATTCACTCAAATTATATTTGATTACAGATAATTTTAGATTTTACTACAATTAGAATGCAACCAATATTTATTGAAAGATTTGTTTGGAGTATAAAATACTGAAATAAGAA---ATTAGAAATTGGCTCAGTATCAGTTAAGTCAATCTCCAGATTTGAAACTTCAAACATGACATTTTATGAGGCTCAGAAGGCTGAGGACATAGACGAAGA-AGTCATAACAAGAGTTCTGTCTGAAGCTGCCATTAATGAACCTTATGTGGAGACCGAATAAATGATGTTGGGTCATTAGACATTTTCAGTTAAAATGACTTTCTTTCTAAAA--GAAAGATTTTTGCC--------AGTTGAAAAAGAAAACACTCTGTATTCCCTATTAATTC-CTTTAACACCACTGAAAATTGTCAGCTATATAATTAAGCAATGAAACTCAAGGAAAATTAAAATTTCTGTTT--GAGTC-CAAAGCTAAGTTGGAAATGAGTTAATGTTTGCTATGGTCTCCCCTTCTTTGTAGTAGAGTTTTAT
s HiC_scaffold_1 136492153 3242 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaagcagaaagtaaaatggtTTTTGAGGTAATCTTGAAGAGTGGGAATAGCTACCTCATCAGATCATGGAAAACTGCTCTCTTTGGGTATAAATATAATCTCTTTTATTAGTTTTAGAAAATTCACAATTGACCTCCATCACTGTCTTTCTGGGTTATAGTTTTCTAGGGGTACAAGTAGTTACTTGTGTAGtgacatttatttaaaagtgaatGCTCAAAGACTTGTAGAGTAATCGCAATGAGAAAAGTGCTGAATGATTTTACGAGGCAATAATCCACTTCTCTTATTGCAAAACTCTTACCAGCCTTCAACCTTATAGTTTATCCACGCGGGAACCAGATTATTGCCTCATAAAACAGCTCGGTGCTCCTATTATGGCTTAAATATAATTGTGTTTAAAGACCTTGTTGATTCCATTTAGCAAAAttagttttt-atcttatttcatcGTAACAGTGGCTTCTAATAACCTTGATGATATTTTGATGTGTGgccaattatattttcaaaaccagaaaacaatagttttccttaaagtaaaattttcaaaagaaaaa---gttttgaatctttttcactttaatatta------acattcattattgtttt--gagataatttgttttaatttggtaGATAGTTAATTACATCTTTATACAGACTA--ATAACATGAAAGTAATTATTATGTGCTCT---ATTTTGCACATCCATTATACTTATAAGACTTTTAATAATGATAGATTGGGTTTTAGTGATATGTACTTAATACCATACATTTA--------ATGCTGGCTTATG----------CAAATATAGCATTTTCAAGATTTGTGAGCA---------TAGTCAAATTACAGGTTAtacttaaatttctttatt-------aaaatgatGCAATTATAACACAAATTC-------------TTT------------------TCTCTGGTG----------------------------------GAAAATGTGGTGAAAATTAAGTAGCATAAATGT-ACAGccaatacaattttctttttacacattttttcctCTACTGTTTTGTATGTAAAACTACA----GCCTCACAAGAGAAAGATCATAGATAAAGGAAGTCAGA----AAATGTGATCAAAAATCATGGAATAGAaacaagaatgtaaaaaaaaaatgag-------actatCTTTATAGCATAAATTTCAGCATTCTAACAAGAAAAGGGATAATTTAAATCTAAGTCAAAGGTCACAACCGAGTACGGAGATAATGATTGGAAGTCTTCCAAAAGTGCTCAGTTAATTTGTTGAAAAGCTAATTGGCTGGTCCTAGAAAATTTAGCTATGTGTGAAATATAATCACTAATTTCTCAGAATTACTTTTTCTGGTGATCACTTTATTGCAGTGTAGCAACAGCTTTGTGTTTTGCTTGTCTTTGCTTGTG----TCACACTTCTCTC-ATGTGATGGATGAATTCCTCCTGAACAGTAATGAAGTGGTTGGCCTTCCTCTTCTTGA---CATGATTCTCAATTTTAATTCAggtgatttgaattttttttttttctattctcaaaAGTGCATTTTCCTGAAGTCAAGtttacaaaatagaa-attttaaaaacacta-----tttgTTCCGTAAGTCCCTATGTATCATTTAGGAATCAATCTT--TctatcttttaaagtaaaaattattaattttgctaCCTGAAAACTTATTATAACAGTCAGAAAGAAGTGACAATATGAATTCTGTTAAGTATAAAA--TGCTAATTATTGAGTCGTCTTGCATACTAAGGATATGCTACAGAGTCTGGAGTAC-------------------AGTGTAGTTTA---------TTTAATTATTGTGATGCAT------------------------------------------------AAATTTTTTCA------ACATTC------------CTAGTACATACCAGGTAGTAGAAGT-TAAAATTCATTGTCATTTTTAC--------TAGTGTGAACTTCCAGTTATATTCAGTAACTTTGTTATAAATGTCT-Acttagtttaatttttctttccaa--actgaGGAAAAGCATCcttctgggaaatatttttaaatg----ttttaaaattattatcagCTATCTCCTAACT----------TTATAaaattgaga----aaggaaaaaaatagcagtaaaaCTAAAGCAGAAGACTAGGGAAAATAGATTTTCTCACTCTCTTATACGCATAGTAAAATTCT-TTAAtcaactttgttttatttttagaaaataattttactcaTAACCTAAAAGTAGCA-AATCAAGTCCAGTCACTTCATTATATGGTCCAGTTCTCTTTTGATCTAGC-CTACTAAGAAGCTGTGAGCTTTTATGTGTTGTTATTTTCCTGGTCCCTTGAAAAATGACATCAAGGAAAATTCACAGAACTCATTGCCATCTACCTCATAGGGgtattatgaaaaaaatctattaacaTTTACAGGGTGCTTTTGAGCTTTTCAAAAGAAAGACATTAcctaagaacaaaataaataattttaaaagcaacattTGATTAATTTAATTGTAAAAGAATCAAGTACATATGCATGACATTTACATAAATACAAGAATAGATTTAAGCAACGAAGTTTTTGGCCAGTGCTGCTTTAGGTTTTATGAATTGGAAACACTTTAAACATGGTTTGATAGATTCCATAAATCTAATTTGTAAATGTTTGCCAATTCTTGATACTACAAATAAATATCCCTTTATGAATATTCAA-----------AAGAactatttatatttctaataattATCTCCAAATTCTTCAaagattttcataattttaa-gatatttatttcaaatcaaaagaaattattGGTTGGTTTTCATTAGATACTGATTGCAAAGATAA--TTCTTATTTTCTATCCATTCAACTGATATTTGATTACAGATAATTTTAGACTTTATTACAGACATTAGACAtgaaacatttattgaaaaatt--tttggAGTATGAAAtactgaaataagaaattattatAAGTTGGCTCAATATCAGTAGAATCCATGTCTAACTTTGGAGTCTCAAACATGACATTTAATGGACCTCAGAAGGCTAGGAAAATAGATGAAAACAATGATTACAA-AGTTTTGGTAAAATCTATCATTAATG--TCTTAAGCAGAAAC----TTTATGTTAACAGACCATCACGTCTTTTCAGTGGAAAT--TGTTCTTGCCAAAACTAACAAAAGTTGGACAAAACTAAAGATAAAAGATGAATTGTATTGTATTCTTAGTTATTCCTTTTTAACGCCACTCAAAAGTACCTGAT-tgcatttaagaaataaaactttaggATAATTAAGATTCCTGTTTTGAAGCCACAAATGTCAATTTGATTTCACATAATATATGTCAT-TTCACTCTTCCAGTGTTGCAGGGCTTCGT

a score=79390
s chr3           149918963 2500 + 160039680 TAGTCTCCTAAAATCAATTCTTTTGTTTTGTTTGTGCTGAAGCCTCTGTATAGAAGCTGAGTTAATATTATTCTCCAAAAAATATAAACAACCTAAGAATAAGTAAAAATGAGAAGGCAAGTTATAAGGCTATTTCTGCATGGAAAATAAAAAAGTACTAATTATCACAAAGCCCACGTAGTTTGAGATTGCATTCCCTGTATCTTCAGCTTTCTTCTGTTTTTTTTTTTTTTTTATCTAATGTTC--AAGTAAATTCAGGCCTTTTTAAGGATTATTTATGTTGTCTAATATAATCATATCACAATCACAATACATGGTTTGAACTCCGTAGCTAAGAACAAATGGCCATTCTAGAAGGGAAATAAAATCATTCAATAGTTGCCTTATACATAATAATTATTCGTAAACCATAAACTTTTATAATTTTCTCATATGAGCAGACAATGATTCCTTATAGAACCACACAAACGGT-------TTCTGCAGATACTTAGTTCTGCTATTTTAAGATTCTGGGTCTTTGTGAAATGAGAGGTTTTATGAACTTTCTTTGGATGTAGTTTCTTGAAAAGGCGAAGAAGAAATTCTAAACTCTTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgataattgtgtgtgcgcgtgtatgtgtgcctgtgtgtgtgtgtgtgtgATACACTCTTGTTCTCATCAGTGACCTCTTCATTGAGGAAAAAAGAGG-ACGGAAGAAAGAAAGTGAGGTTTTTCTCTGATGACAAGTCAGTTTAAGAGAAGTCTCTGATCAATGACCATGCTGCTCAAAGGCAAGCGGTTTCTGGTTTCTCTTACGGGGAAAAAAAATAACGCTAACATATTGTTGATGGCTTGTAGTCTTTTGAAATTGTGGGAACATGTTCTCAATAAGACTTCAGAAAGTTCGGTTTGATTTTTGCATGAGGACTTCATTTATGGAGTATAAAAATATCCTCAGTTAAGTTAATGCCTAGGAGAGAGGAAGTGAAATTTGAATGCTGCTTTATTTGAAAAAAAAATATTTAAAAAGGCCTCATATTAATGACCCCTGTCTTATTAGGCAAGAGTTGCCTCTCTGAAATAGTTGAGAATTTAAAAACATAAATATCACATTTTTAATCTCCTAACTGGGTTAACAGAATTACTGATGTTGAAATTATCATGAGTTAAGTGATTTATGATGCTAGAGCCTCTACTGACTTGAGATGCTACACTATCAAATAAAT-TTAGTGTAAGTTGCTTACAAAGTATAAAACACTAAGAATAAGTATAATTAATCTTTCAACAAAAATGTCCAGTGAGCAACCAGA--GTC-----GATGCAACACT-----AAGTGTGCAAACACATCATCTAATGTCATGTCTCCTTCTGTGA--AATATTTGTGGAGCCGAAATTGTTTACTCTGATGAATCTGATTACATTAATGATTTCCAGTGTCTCTTATCTAGCATGAAATGAGCTCATTCTGCCCTTTGGTCACAGTGTTTTACAAGCAGCTAACTGAATAACAGTAATAATTAGCTTTAATAAAGTTCTCATCAGAGTGTCTTAAAGTGCTTTTGCAAAGAATTAAATTGTACAGGGTTCAGTAATGCAGAGGCTTTGCAGTTttttacatgggtaaagtgaggctctcagtacataagtgactctccccagatatatgcaaaaaacagtcaaagattcatgagtcaa-tgtaggaatcctggctccgactacattgatcCGAAGCTGGACCTCATATTTACTGGAGAGACATATTTGTCTTTAAGGGATAAACCAGAGGCATGCATTTCTTACAGCCCTACTTCAGCTTCATAATTAATAATAAAAAAGTCTTGCCA--CGGAATAGGACACTTGTACTGATGGATGAG------GTTGGCTTTTTTTTTTTTCAAATATAGTTTT-----CAGAAATATTGCCTTTTGTATCTATATCCCTCTTTCTTG----GCATATTTTTAAGCAGCTTTATTCAGAGAGAAATTCTCCCATCAGTGAAAAAAAGAGCAGTTATTCTTTTTTTCTATTCAAAAATTTAAAATTAGATTTTATTGTTTGAAGTAAATGGATAAACATTAAACAATTCTGT-----AGCAAAACCAAA---------AACTCTGAAATCTTCTATTTGTTTTTGTCTCATCCAAAAAATATAAGTAATAACTCACCACTTATCACTCCTTTAGGAAAAAAAAATAGTAGAGCTTCACATAA---ATACTTGTTTCTTCTTAGATGAGACACAGACAGAAAGacagacagacacacaccacacacacacacacacacacacacacacacacacacacacacacacacac-acagagagagagagagagagagagagagagagagagagagagagagagagagagagaATATTATTTCTTGATTCTTTTATG--GAAATTAGTTCTTTCAATTTTGTTGCTAATGGAAATATTTTACTTGCATAGTACCTTTACTTATGAGATTAATAATCATCCTGTGAAATAATCTGCTTTATTAAGTCTAGAA
s HiC_scaffold_1 136500567 2346 + 233722169 tattatcctAAAAccaatgat---attttaattgggCTTTTTATTCTGTATAAA--------CATTAATATCGCCagaaaaata--------ctaataaagagtgtaaaacaaaatacatattagAATACActtcatg---agaaagaaaaaaaatccttactCCTTCAAAGACcatgt---------------ttcatgtttttaaagatagttttcttttattcttctcttctaaaaaatatttctaaacaatTTGAGGTCTATTCTAGACTTATTTACATTATCTAACATAATCAGACAACATCTATAATACTTTATCTGAACTCTATAAGACAGAACAAATGAATATTCTAGgtataaaataaaactactgaataatagTTTTATAACTTGCAATTATTCATAAACCATAAACTCctatcattttcccatatttgaggacaatgtttcttt---gaaaagtatAAGAGGTATTTTAACTCTGCAGTTTCTTGGATTTTCTATTTTAAGGCATTGGGTCTTTTTGAAATGTGAAGTTTTGTGAACTTGCTTTGGATGTAGCTTTTTGAAAATGCCAAGGAGAAATTCTAAACTTCTTTTTGTG---------------------------------------------------------------------------ATATGTTCTTGTTCCCATCAGTGACCTCTTCGTTGAGGAGAGAAGaagtaaggaagaaagaaaatgagatttt-ctCTGATGACAAGTCAATTTAAGAAAACCCTCTGATCAATGAGTGTGCTTGGTTAAGGCAAgaggtttctggtttcttttaagggaaaaaaa-----tgccAACACATTGTTGAtgtcttgttgtctttgaaaGTCG-GGATTCATATTCTCAATAAGACTGTA--AAGTTAGGTTTGATTTT-GCATAAGGACTTCACTTTCAGAGTACAAAG-TATTCTCAGCTAAGTTAATGGcatggagagaggaagagagactcaaaaattgtttt---tgaaaagaaCTCATTAGTAAAAGT---ATGGTGATGAACACTGTCATATTAGACAAAATTAACCAGC---AAAAGgctaattttctaaaaatgtacaTG--ACATTATTTATCTGTTTACTAATTCAATGGGGTGGCTAaagttgaaattatttcaaatccaGTCATTTGTAAGCCTGAAGTATGTGTCGAATTTAAAACttataacatgaaatatatatCAGGATGAATTGCTTACAAGGAACCaaacactaagaa--aacaaaatgtacttttttaattctatttcatGTAGGAAGCCAAATTGTCTGTTAGATTCAACATGGTGAGAGGTAGGCAAACATGTCAATTAATGTCATGTCTCTCTTGGTGATAACTACTTGTGGAGCTGAAATTGTTTACTCTAAGAAATCTGACTGCATTAATGATTTCTAACATCCCTTAGCTAGCATGAAATGAGCTCATACTTCCCTTTGTTCACAGTGTTTTACAAAGAGCTAAATGAATAACAGTACTAATTTGCTTTAATATAGTACTCATCAAAGTATCTTAAAGTGCTTTTGCAAAGAATTAAACTGCACAGAGATAAGTAATGCATATGCTGTGTTGTTATTTACAT-TGCAAAGTGGAGATACAAGAGCTTAAGTGGCTCTTCCCAGATCTATGTAAAAATCAGTCAAAGATTCATGAATTAATTGCAGGAATTCTGGCTCCTCATTCATTGATCCAAAGCTATTCCTCATGTTTATTAGATAGACATATTTGTCTTTAAGAACT-AACCAGAGGCATGCATTTCTTACAGCTCTATCTCAGCTTCATAATGAATTATGAAAAAGAATTACCAGGTGAGACAGGG---TTGAACTGCTCAATTTGTAATGcgtttcactatttttttttcaaaaataatttggtTGACAAAAATAAGATCTTTCACGGGCACATCACCTTTTCctggtttgtttatttataatacGCTTTGTGTAGAGAGGAATTTGCCTGTCGGTGATCAAAAGGGCAAccattc-tttttcctatttaaaaatttaaaattagattaaaattgtttaaatagatgaataaacaatGAGGTGTGCtgctgaaaaggaaaaacaaaatggaaaataaagcagGCAACATTT-TTGGCTCCTGTCCCATTT-CAGAGTAGAATTAAGAGTTTACCAGTAAATCTTCCTTTTAGAAGGCAA-----TTGAGGTTAAGATAGTCTATGTGGTTTTCTTAgtaggtcacacac----------acacacacacacaca-cacacacacacatgcatgcattcaCATGAACACACTAATGCACACACATGCTACATA-------------------------------------------AAATAGAAAACGTTTTCCACTGGCTGTCTTATGTAGAAATAGCTTTGTGGAATATTGTCGTTATTTGATATATTTCAGCT-CTTAGTAGTCTT-----TAAGATCCACA--TATCCTTttcaata---tatattattaaatctAAAA

a score=32964
s chr3           149922415 1442 + 160039680 TTTCAAACAAATCTGAGACTGCCTTAAGTACTTTACTTTTAGAGTATCAA-CAATATTCCAATTAATTAGGAAAGAGTTTAACCATGGCAACAACATTAATCAATTTAACAATTCTCCTCCCCTTCATTCATCTTGGAATGAGATAATGAAGCAAGACTAGTGTAGTATAGAAGTCACTCCTATCTGAAGAATTTGTCTGTGAATAGCCTTCGGTTGCATAGTCTACAGCACTATTTAAGCA----TTATGGTTGAAATGAGGTT-AAACTTTTGGTAGTATCACACACTAGATGGGAGAAAAATTACTTAATACAGCATCTCTACAGATTTTATAGAAATAGAGTAT---TCATCTGTTTAAAAAGATAACTAACCTCATTGAAATACTATCAACTAAGATCA-TGTAATTTACTTTAAAACTCAGGCAAATGCTTGCTTTTAGGTC-AGTCATTTCTAGAACTAT---GGCCTTCACCTTATAC---------TGCTGAGAAGATGTTCACAGGTAGACCTTGAACTTATTTTCTCTTAAAATATGCACAATTGCCAAGCAAACAACAA---------AAAAGAATAAATTTTATAACTCCGTAGATCCTTCTAATTTCAATATGCCCCTTGCTGTAACACATTTTCATGGGAAGCATCTAGTCTTTTTTTGTAACAAATAATTCCATGTAACATGGCAATAGCTATGGAGTTTGAGAACACAATGTTTACATAAACAGGAACCAACCATACAGA-ATTAGATGCATGAATCTAATGTTCATGGAGATTAAAAACAAATGGGAGATTCTCCTAAAGTTTCATTAAATTGCAACACACATAGAAAAACTCTGTAAATGCTTTC-----------CACCTCCCCAGAGCT-TATTCCTCACAGTATGGTAGCCGCCTTGGGTAAATCTGTCTTTTCCTTCCACTGATTGAAATATAAAACTAAAGCCAACAAAAA-ATAAGTTCAAGACTCAT-TATGCTGGTGCACTGTTTGCTGAAGAAATGAAACAGACTAAAACACCAGCAAACAGTAAATGGATGCTCTATGGCTGTTAGGGATTAGCATCCTAAAATTTGGATATCT----------TTGTCTGCATGGAAAAAAAAAACAAATTGAATTAACTTAAGAGGAAAA-----GTATCT--TTTTTAAAAAGGCTAAAATATATTTATCTATACATAGTAATAGCATTAGCCTTCAGTGAAGTCTGGACTTCAT-TCTGATGACTAAAACAACCAATAAGCATGATGAATGAGAGAATGATTGAGTGGTATTGGAGTGACAGCTGATTTAAAATGACTGCAAGTTTGTTCTATGTACACAGAAGCAATGCATGTCCACGCCAAATAAAT---GCAATACAATTTTGAGTAAATAAAAATTACTGAAAAGTGTTTTTAAAATGAAATATGTAAAATCGAGGCAGCAGCATGGGTAACCTTTTT---CCATACTGCTCTGAGACCTCTG-GTAAGTCC-TGAAA
s HiC_scaffold_1 136504248 1353 + 233722169 TTTAAAGCAAATTTGAGATTGTTATAAGTATCTCACTTTCAGTTTACCAAACAATATTACGATTGATTAGAGAACAGTTTAACTATGGCAACAATATGAATCAGCTTACCATTTCTCCTCCCCTTCATTCATCTTGCAATGAGATAATGAGGCAAGACGACTCTAGTAGAGATATCACTTTTAGTAGAATAATTCGTCTGTGAATAGCCCCAGATTGCAAAAATTACAGcatcatttaaatattatttatggtTAGTATGAGGTTAAAACTTTTGGCAGTATTTCACAgtgcatagaagaaaatctattcagagcAGCACATTTACACATTGAGAAGAAATGGATAATgagtcatcttttaaaaaaggtAATAGAACTTGTTGACATATCATTTGTTCAGCCcactttacattatttttaaacttaggTAAATATTATCTCTTAAATCAAATAATTTCTAAATCTATCCAAATCTATTTCCTATCCAATGGTTGGCACTCAGATGGCGTCT-----TGATActtttctttgttctattttaaaatacaaata---------tagacAACAACTGCATAATATACAAATAAATCTCATAGTGTAATTTTCCCTTTTACTTCCAA--------ATGCCATAATA----TCTataggaagttttctgctgttttttGTAGTAAATAATTATATGTAACATGGTG--AGCTTTTGAGTTGGA-AACACACCATTTAGCTAAACatgaa--aaacatagaaatattaaA--CATG--------gttcatggaaattaaaaatgaataaaaagtt---gtAAAGT----TTAAATTGCAGCATACACAGAAAAATTCCTGAAATATCCTCTTTTACTTATTCACCTCTCTAGGGCTCTATTTATCACTGTATGGTAGCT------GGTCAATC--------------------------ACAGGATCAAGACAAAGAACAGTATATGCTCATAAAATATGTATGGTGATGTATGATCCACTGCAGCATTTAAGCAGATAAA-----CTATAAACAACAA----ATGTCCCATTGCTGCCTAAGATT-------TAGAATTGAGGCATCTTGGTAATCAATTGtttgcaag--aaaaagaaactaattgAATTAacttaagaggaaaatatttgtttctgcCTTTTTGAAAGCC---------TTTATC-ATTCATTAT-------TTAATCTT--------TCT--ACTTTTTGCCTGAAAGCTAAAGTAGTCAAGAAGTattacaggaaagagaaaaa------------------------agtttcaaATGGCTATAAATTTGATTTGTaatcataaaaataccacacGTCTAGCacaaataaatttggaaatataattgtgggaaaatgaaaaagagagaaaa-tgtatacgaaaagaa-----taaa-------taatggtATGGTTGCCCATTTTCTGCCTTATTGCTCAAAGGACTCAGTGTAGGTTCATGAAA

a score=41323
s chr3           149928663 2508 + 160039680 GGCAAACTCAC-TTTCTGCAGATGCCCCTCTTTGCTAGACTCTTTGAAATTAAAAATCTTGGCAGAAGCTCGCGATCCCCCACATGCATTTATCCTTCCGTCTGTGGCATTTGAAAAGTTGCTTTTTCTT------ACCACAGTTCAAGCTCTAAATGCCCACTATACACCAAGACCTCACGAGTGATTTGCCCAGTCCAAAATACAGT-GATGTATCCTGGGCCATTAAGTAGCTAACAGCCTAATTAGTCCTCATTAAGTTGAGGGTTTGACTTAGTTTGAGGATGGGAATTT--GTGCCTGTCCATTTCTGATACCTCTTTTAGGGGAAAATACCTTCCGATTTAAATAGATAAAAATGAGTTTCTAGTCACAGTTACTTTAGAATTAAAATTTTAAAGAGCCCATCAAAAAATAACTCTCACATTCAACTTTACTG-AGAAGAGCATGCAGAACAAAAGCACGTGCGGC-TCTGTAGGTTGGCAGGAATCCTTGTCTGGCACTTTCCAAATTGTTTTAGCAACGTTTGGCAAGAATCTATCACAAATTATGGATGATGATAATTTCACAGTGTGTAGAAGCAGATGGAGAAGATGAATTGACAGAAAGAATGTTTCTTCCTCGAAAACTGATTGGTAATAGTAATTATTTTTAGAAAGGGCAAAAACGTGTCAAGAATCACCTACTGACTGTTTTATAGGTATACATATATTAATGTGTAACCCGA--CTAATAGAAGAAACCTTTCATCTATGCAAAACTGAAGAAAATATTAGCAAAAAAAAAACCTAACCTTTAGTGGTATACATCGTAT---TATTGAGGGACGATTCTGAGTTCTGCACAGGCATAATTGTTT-ATTAAAATGTCATTTCTCCTAAGGAAAATAATTAATTCAATTGACAGTTCATTGAAGAAAGAGTACATAACTGATTGTAGCATATTTTTCTTAGAGGTAAAATTTCCAGTAATTTTGTAACAAATGAGGCCATTTTTCATTCTTTTTGTTGTTGTTTATTCATTTAGTTTTTTTTTTTAAACTCATGGGTAATCATTTGGAAAAATCATGATACCTGTATAAGGTGGTATGACAGAGTAAACAAGTTAAAAATAACCAAGGTTTGTTTTATATTAATCCATAATGTTACCTGATGGTTTATGACAATGTGATTCTAGATGCAGAAAATGGCTTAAAGTGTTTAAAGAACTTAGTGTTTGCCTAGCAACCAGGATGATTTCAGATCTGTAGAATCCATGTAAGTACTGAGTGGAAGTTGTGGCCTCCTGGGCTCCAGCTTCAGGAGGTAAAGAAGGCATCCTTAGAGCAGGCAGTAAGAAACTGACTGTCTTTACTGACAGAGATGTTGCCTGCAAGAATAAGGTGGAAGGCTATGAGAGGGGCCTACATCACAAGGGCTTCca-----catacacatggatatgtgtgagcatacatatgtgcatgcatctatgcacaagcaaacatgtgtaatacatacatactgcacacataATCCCA-CAGAAAAGAATAAAAGTGTGATTCTGAATTCTGAACTATCGTTTAAACTCAAGCCACTTAATCTGTGCAGACAAGAAGACATTTTGCATACTCTTTTCTACTTCATTCACAGTAGCACACCCAGGAACCAAGGTCCTCTATAACTCCACATGTATCAATATGTTCCACTTTGTCA-----TATCTTCCA------TAAATTACTGAAGTTAAGCAATTCTTAAAACAAGTGTCTCTGTGAATATTAAGTCTGACCACTATGCCCTTTTAGGCTACTTTGACAGGCTTCTCCTGTCCTAGGCATTGGCACCACTATTT---GCTTTctctgtagtctcactctctt---tatctttctgggctttgttgtttacacatgttgacctccacactgtctcgagcacgaaaatctcatcctagtgcccagaacctgagtttgctgttctcactgctagaacagtctccctccatcttccttcagcatcttctcatccctcaggtctccctttagttcaagtaccTGGACTAGGTTCTCACCCAAATACCTTCATCATTCTTTCTTCATCTACACCATTTGTCTT--CTACAGGACTGATTGTCATCTACACGTTGTAGTTATTTACATCTTGCTCATTTGTTGTAACTGGTCAGAAGTCTATAGGAAGTCTATGATGAGGACTTAACACTT-CTTTTTGTAGCTTCGATGTAACATAGGAATTAGCCATATTGTTAGGTGGACTGGTAACTTGCAAACTTATTTTCTGTTATTATTGTGATTAG-AAATTATGGTCTGGTTGTTGCTAAAGACACTCCACTAAGTTATG----AATGTTGCCTTAAAAATAAAGT-----GAGAGTGAACACTTCACTAATGTGCTATGGGAA-TAAATAAAACTAAAATCTCCACTGCACAGGATACTTCGAGAGTTAAATACAGCATTGATATGTGGATATCCAATTTACTGTGTGGCAGATAAAA-ATGATAAATTGAGGTTTATATAATTTATAGCTAAGTTAAAAAGTGGTGATTATAT
s HiC_scaffold_1 136510606 2139 + 233722169 GGTAAACACCCGtctctgcaaatatttttccatgcTAGACTCTTTGAAAC-AAAAAGCTCAA-------TGATGACCTGCCCAATCTTTCCGGTTTGCAGTCTCATGCATTTCAGTAGTTGTTTTAGCTTGCTTGAACCAC----CACATGCAGAGTGTTTATTGTATACTAAGGACACCACAATGAAATGcagcatttaaaataaagtagATATCGCTCCTGTCATGCAGGAACTCGCAATTTAATTATTCCTTATTAAATTCTGATTTTGTCTCACTTGGGGGTTATGAACTTTAATGCCTTatcaattgtgttattgcatttAGAGGAAAAATTCATCAGTTCTAGATAGATAAAAATGAATTCAATGTCACAGTTAGTttggaattaaattt---aaaagtccaTCAAAAA-TAACTTTCATATTCAACTTTCCTGGAGAAAAgtataaagaacaaaagcatcTGCAATATGTGTAAGTTGGCAAGAATCCTCGTCTGGCACTTTCCAAATTGTTTTAGCAACGTTTGGCAAGAATCTATCACAAATTATGGATGATTATAATTTTGCAGTATGTGAAAGCAGATGGAGAAGATGAATTGACAGAGAGAATGTTTCTTCCTAGGAAGCTGATTGGTAATAATAATTATGtttaaaggagacaaaaaa--atcaagaattacACACTGACTTTATTATAGGAATATGTACATACCTTTAAAAACTTATTCTATTGGAGAAAATCTTTAACTTACTCAAAGTTGGAAAAAAATCTACTAAAGATTG--------TTTCAGAAGCATGTGCAGTATACAAACTGGGCAAT-ATTCTGACCTCTATAAAGgcataattatttcattaaactGCC-TTTTTGCTAAGGAAAATGATTAATTACATTGGCAGTTCATTGAAAAATGAGCACATAAATGAcagtagtttatttttcttagagaTACAGTTT-CAGT--TCTTCTAACAAATGAGATcaatttta--------------------------tggtattttt-----aactCATGAGTAATCACTTGG-AAAATCATGATAGCTCTATAAAATAATGTTCCTGAAGACATGAACTCACAATAGGcaaattttatttgcagacaatgtataTTGGTCCTTTCTGATTTGTAACAATGTATTTCTAAAT---GAGATTGGGCTCCAGAGT---AGGAAC-----ATCTG---------------GGTTCTAATTCCG----ACCCATTTA--------------------GTCCCCT------------------GCAAAGGACCCAACCTCC------------------------TCAttactctca------ttctcttcaggACTCAGCC--ATGACCAT-AGACAGCCCTGCAGC---CATGCTCCCATCACCCAT-TACCTGGGTTATTG-------AAATAACTTGGTTTCTCTTTGAAC-----------TTTGCTTCCTTCAGAGGATTCTCAAAATGACAGTCGAAAAGATTATAAATCTAAATCTTATTGTGACACT----TTTCTAATCAAACC----------------------------TTCCAAACCTTCTT--------------------------------GAGGT-CTTTACGgctccatttgtatt--tttcctccACCTCCTTAACCACTGACTTCAAACTGtttggtttcctggtgctccacACTTGGTGGCACTCTTGTCCTTGAACATACAACG---------TGTGCCCT----GGCT------CCAAGCTCTT-----------------CACCATTATTTCTGGCTTTTGCTGGAGTCCACTTCTCTCAGGTACCTTCATGG------------------------CTCTCCTTTGTTTC-----------------------------------AGTCAGCTGTC----CCATCAGAAAAGTCTCTC-----------TGAACATC----------------CTCTTTATAATTCAA---------------------------ACCCTCATCTACTTCTCTGCCATCCTGCTAGTTTGCTTCGCTCTAAGACTGA-TGTCATCCATGTATTTTAGCTACTTGC--CTGGCTTACTGTTTGTCATTCATCATAGG---ATGCAAGATCCATGTCAAGAGATTTTCACCTGCTTTTAGTGTACTTGGTACAAAATAGGAAcagcaaatatttttaagtaaattaaaCAATGTTAACTTTA---TATATCATTATGATGATTGGTGAAACAGGATCTGGTGGTTCCTTCTGACACT---CTCAGGTGAGAGACAATGTTGTCTTACAGATAAAGCTACAAAAGCCTGACAGCTTCACTAGGTAGTTTTGGGGGTTAAACAGGATAAAAATATCTACCCCA-AGGCTGCTTTGAGGGTTAAATAGAACATTTACATGAAAGTACCCAGCACAGTGTTTCACAGATAAAAGGTGATGAATTAATGTTAATATAATTTGCATCT------GAAAGGGGAGATAATGT

a score=69129
s chr3           149934198 2782 + 160039680 CTATGTATGTATTGTGATACTTATATAGATATACA---ATACTTATATAATACACCGCATACTTACAT------GCAACTGCATATTCACCTAGCTGAGTCTCTTGTCTTATAAG---------------ACAGACATTAAATCATCCTCTAAGACATTCAGAAATGGTATCAAAAGCTCAGGGtttttcttttttcttttcttttcttttttttttttttttttttttttttttttttttttttttttttCAGAGTCAAGCCT-TTTTTCTCTGTGACACTTGTGTCTCCTTTTTGGGTTAAGTTAAAAATCCCCTG-TGGATTGTCCTTTTTTTCCCATAGCAATTTATATAAATTCACCATTTATTATTTGGGAAACTCATGAAGAACAGTGAATAAAATTGTCAAGCTTCTTTTATTCTACCACAGTCTGCTAGCTTGAAAAGGGC-TTCCTTGATCATAAAATGATCCAGCAAAGGTGAGGCATAGGTGGATCCCTATTTTACAGCACAGAGTG-AGTTTCCAAAATGATGAGC-----TCT-TTGTGGATAACCCCA--------CGCAACCTATAC---------------------TTTCCTCTTTATTTTGCAA---------ATTATTGAATTC-------------------TTTCCCAAATT---------------------GTCACCCAAATG---------------AGGAATTTTGAAACCTCCCCAAACTTTGATGAAAGTTTTGGGAATTTGAAAAACCT-----------------------------------------------------------------------------------------------------------AGTGTCCCTATAGATCTCTTGTTTT---------GTATGAACACATA-TGTGCTTTAATAAGCACTCAGGTGGTACTCCCAGATTCTAAAAATGTCACTGGAT-GCCTGTTTCAG-AGTTTATGAGTCGGAATTTGAGA---TAACCGAAAATAGATTTAGGTTGAGTAAGACAGATTATCTTTAAAAGTCAACATTAGGTTACAAAATAATTGGCTAATGGAAATTGTG-----AAACCAGTCAGAAACTCAAAATAAGCAAAATTCTAATGGATTTACCACAAGTAACGTAACGTGTTTTGC-ATCATTTTTT-CTTTGAATAAGTGAAGTTTTTAAAAGTGCTTTTAGGCTCATAAATTTAATTAGAGATTTCATGTGTTCTCCACAAGTCCTGTTTCCTTTCATCCCACATACAGCCCATCTGCATGCGAGACACATTTTGCAAAATGAAACACTCAATTATAGAACTAT--TTGCTGG--GTGCCAATTTAGTCAATGTTT-TACACTGGTGAAGCCATCTTTACTTAACACCTCATAAAAAGAAAATCCAGCCTCTTAGAAAAAAACCAGGTTTATTGTACAC-AAGGGTCTATGCTCATGAAGGTCTCTTACTATATG--AAGCAAGTTCCAAACTCTACAGATCTGTAGGGTGCTGTACTTCTTCTTAAGAATGCATGTTATGTACACCTTGAAAATATACATGTGAATAACAATACAATATGTTCCATATTTGTAGTAAATGCTTAGTA-AAAACTTCAGCACAATGTAACTATGAGAAAgac-------------tttgtcatacaataaatctg--ctattgggtattctctctctctctctctctctctctctgtctgtctctctgtctctctctctgtctcactgtctgtctgtcTAAATAATATCTCTAAAACAGACACACACAAGGATGCAGCAACATAGACAACCTCCATGATAAAAGCCTTCCATAATCATAATTTTCAAGCCTC-------------TCTTTGGCACCCTAATAGGATATTCCACACGCATCATCATTCTC--TCTCAGCATGATGTAAACACTTTCCTTTTGATGGACTCCAGCCATTTTTGAGCATTCCCTAGGGGC-CCACACTGGGATGATCTTCCACATTGTCCTCTAAACATCCAGCCATGTAGCTGGGTGTGCTCC----AGTTTGGAA------GCTTAACAAAGATATCACTTACAAGCTGCAGTTGCTGCACTGTCATTGTACCTTCCCAAACACCTGCCTATTGATG-CCTGGCTCTAGATTGTGGGAGAAGAAAATCGATTATTTCTTTGTGGATCCTGAAGCCATTTCATCT-----GCACATTATT---GATGGAGCACAGAAGAATCAAGTCATGATGACCTCCGAATAAACAATATAGGGGCAGGGCTGGGAGTA-AAAGGCAATCAAAGCCTGTGAAATGATTTGTATGCTAGTAGATGTCTGTTCGCAAGACTTGTATTTTGAAAAATCTCAGAGAGTTGTCTAGGTAATGCCATCTTTCTGGTTGTTTCTCTTACAGCTCAGACAAGAT-TCTGATTGTCACAGCTGAATTCATTTAGTACATGCCTAGACTCACGCTGGCTCTCGGCTCA-GAGAACAGATGCACATCCATTATTAATCGTTGACTATTGCAGTCATCATCTCATCATTGGGGTAGAAGGTAAACGCCCATCAGGAAAACAAGCAAACATTGTGATTACTGCAGAACACAGGCAGATAGTTAACGTGTCTCTATCGCGAGAGACTGTAGCCCCTGATCTTTTCAGCAGTGTTTACGGAGGGAGCTCCGTCATGTAAATATGTTTACTACAACCAAGTGAGGTAAACCAGAAGAATCAG-AAAGTTGAGCCTTTGATGGAGGTGTCAAAATAGTTATTTGCCATTCTTGAGCCCAGAAGATTATGTGCATATATAGGGGGAAGGGAGGGGAGAAAAAAATACTGACATGTAACTTCAGTCTAAA-----AATCTCAGGATTAATTTTTATAGTTGCATTATATTATAGAAAATGAAGGGACTCAAATCCAATCACCGAGCAAGTCTGGTGACATGCATACATATCA---GAGAAAACACACTTTAGGAAAGTTCAACTCATCTTCAT--CACAGGGAAAAGGTCTGTATTTTCACTTTCCTCCCGCTGGATTTTCACAGGTTCTGTGATGTGGGCTATG
s HiC_scaffold_1 136514196 2934 + 233722169 CTAAATAACTCTcacaatagatagatagatatagatagatagatagatagtatatt--attcttatattattttgcCTTTGCATATTCATCTATTTGAATCCATT---TTATAAGGAAAATTAGACATACACAGACATTAAATTATAGTAAAAAGCATACAGACCTGAAATGAAGAACTAGCG----------------------------------------------------------TTTTCTACTCTAGAGACAAGACTGTTTTTTTCTATAAC-------TTACCTCTTCCAGATAAGTTGAAAATTCCCTGATGAGTTATCTTTTTAT----GTAGCAATTTATATAACTTCAACATTTATTATTCAGAAAATCCATGAAGAATAGTGAATACAATTgtccag-ttcttttatttctgcttattttgctagcttgaaaaaaatgttccttACTTTCAAAACTTTCTAGTGAATGTCAGATACAGATGATTTTCTACTGTATAAAGTGGAACACAACTTCAAAAAAGATGGACATGTTTCTGTTGCATCTAATCCTTGTTATATTTGCCACCTATGtcaaaaatttgtattatttatttattttttttattttgagacagggtctcactatgtagttcaggcggCCTAGCggaagctgggctcaaactcacagtaatcctcttgcctcagtctcccaagtgttaggattacagtcaaaaaaattttaaacatacgCAAACAATGATCAAAACGCTGCTTATTTTAAAGACTTTAAatgagggtcagggatttagctcagtggcataaatgcctgcctggcaagcatgaagtcatgagttcaatctctgatactcccccccccccaaaagaatcTAAATGAATAGTTCCATATATTGCTTACTATTTGTTGAAGGTGTgtatacttaatattttttaaaaaa-----aaatagagctccAAATTCTCAGAAATAGTACTCTATTGCATGTTTTAGTGGTTTATCAGTCAGAATTTAAATAATTGATTGAAAATGGAGTTAGG----GTGAAGCGTGTTACCTTCAAACTTCAATTATATGTT-TAAAGTACTTC-TTACTGCTAATTTTTCCAACAAgtcagtaagaaaataaaaaaaatttaaattctgatgGATTCACCATAATT----TAAAGGGTTTTaccatctctttttattttaaacaagtgA--TTTTTACAAGAGCTTTTAGGCTCATAAGTGTAGCTAGAAATT-CACATGTTCTGCTTAAATCCTTTCA----TAATCCCAACTGtagttcatgtgtgtgtgtaatatacaCAGCAAAATGAAACACTCAATTATAGGACTATATTTACTGTATGCGCCAAGATAGTcattgtttctgccttggagaggCTATCCTCATTTAACAcctcataaaaagaaaattcagcttCT--ACAGAAGACCTAATTTATTGTACACTAAGGATATGGGCTTAAAAAGGTCACCTACTGTATGTAAAGTAGGTCTAATGCT---------TGTAGGATATCATAGAATACCTT-------CATGCTTCAGACTCCTTGAAAATATAGATGCAGATCACAGAACAATAAATTCCAGGTTTGTAACAAATACCCTGAAGAAAACTTTAACAAATCATAACTGTCAGTGAGACAGATGATGGAAGTTGTGTCATGCAAAGAATACAAATCACTGGGCAG-CTACaagtctctctgtttctgtctctgtct---------tttctcgCTCTGTCTCACTCTTTCTTTT---------------------------------GGTTGCAGGCACATTACCAACCTTAATGATAAAAGCCTTCCACAAAAATAATTCTTAGGCCTCAGGAACAAACACCTCTTTGGCACCCTGAAAGCGTATTCCACAAACATCATCAATATCCTTCCCCACATGATTTACAACCTTTCCTTTAGGCTGACTCAAACCTTTTGTGAGCATGGCCCAGCAGTGTCACACTGAGATTTTCCTCTACTTTGCCCCCTACACACACAGCAACATAGCTATGTGCATTACTGACAGTTTGGACACACGTGCTCGACAAAGAAATCAACTACAAGCTGCATGTATGACACTGCAAAAGCACTTTCCCAAACAGTTTCTTATTAATGACCTGACTCTAGataaataga-aagaagaaaggatatCTCTATGGAAGTCTTGTAGCCAATTTGTTCTGTGCGTATGTTAATCAGAATGgcatacaaaagaatgaaagaatgatgACCTCAAAGCATAAAATTTGGGATAtttattaaaaggagaaaaaaaattgaagccagtgaaataatttgaatgaatatatatttctcttaACAAAACTCGTATCTC-AAGAATCACTAACATTTGTCTGATAAATGCCATCTTTCTGGATGTTTTCCTTGAGAGTCGGGAAAGGCGTCTATGTACTCCAGCTGAATTGATTTAGCGTGTGCCTAAACCCACTCTTCTTCTGAGCTCACTAAAACAGATGCACATACATTATTAATTGTTGACTAACGCAATCATCATC-----AAGGACAGAAAAGCTATACTCCCATCAGGAAAACATACAAACATTATGATTACGTGAAAACATAGGCAGATCTTTAAGATGCATATATTGAATGAAATTGTCATGACTGTCATGTCTACTAAAATTTATGAAGGAAGTTTTGCCTGGCAAA-ATGTTTACTGTAAC-AAGTGATTCAAACCAGAGGAATTTGTGAAGCAGGGTATTTGATGGAGGAGTCAGA-TGGTTATTTTTCCTTTCCGATCTCAACAaattatgtgcatatatacagagTAGGAGGGAGAGAATGTAATAATGACACATAACTTCAGTCTTAACCATAAATCTCAGCATT---TTTTATAGTTGTATTATATTATAGGAAGTGATGGTTCACAAATCCAATCACTCAGGAAGTCTGGTGAAGGGCAATCAGATGATAGGAGAACATCTATATTAGGAAAATCAAATTCATGTTCATTACACAAGCAAAAGGgttcacatttcattttcttgttgctttggTTTTATGTGCT------TCTGGGCTATG

a score=15988
s chr3           149942215 1140 + 160039680 TCAGACAACTCCCTGTGAACACAGACTATTCTTGCCACATGTGACACTTTACCACTACCACACCT--GAATGTATTCAGAACATTGCAGCATTTAATTTATCCTCAGAAATTAAAGCAATTTTT-CTTGTGTCTTGGAGTAATAATTCTAGATCTTATTAATATTATAGCAAGCCCAGGGCTAGCCAGTTTCTTAGTTTAATAGATTACCCAGGTTCAATTTTTGACAAATATAGTATTTTCAGGTAATAAAGCAGCATAAGCATTTGAAAATTTTTGCCAAACATAAGC---CCCCATAATTAATATGTTATATTACAACTCTACAACATGTGTTTCAGGAACTTTTGTTACAAGAGCGAAGCTGTCTGTTTCATCCTAAG-TGCCAGCTGCAGGCATTTGATGTTACTTGAACCTGAAGA-AGGAATGAGCAGTTTGTTTAATGAATATCAACTTTTAAATCGTCCTAAT-ATTGGTGCTAAAT-TACCGGCATCTCAAAAATTCCATA--------ATTGATTT----AAAGTGGGATACTAAGATATAAAATAAAACATCTGCTGT-TTAGAAACTATGCGTGT---TTAACCCTTAATGATTTCATAAATCAAAATCCTGTCAACTTTTCATTCCTTGTCATGGACTAATGAATGGGG------ATTTCAGTTGAGGGTGAGAGAGGGCTTCAAGGTTTCTTTCATAGCATGTC--CCCTCACATCAATA-AGAAATAGTTGCTTATTTACCTCATTTTCCTTTGTATGAATGCTTTAAAAAAAAAGTAACGTTTCTCCACCTTTTGAGAAACTAGCCACAGTAACTGCAAGGACAGTTCATAGGTTTGTGAAGAACATACAT--AGTAAGACTGGTGAGTCCAGAGTGCAGAGATGTACCCAATGGCCTCAATCTGTCCTACAGGTAGAACACAGTC-------------AATGCTTTGCTGTGAAAAAAAA--GGTATCTGGA--CAAACGTGAGCTTGTC----------AACCAAGAACCTTACATTTGTGAGGAAATACTTACTTTGGGGAATACAAAGGCA------------TCATTGCACTTAGATGACTATGAGAAAACAAAGCCAGAG----AAGTATTAACCTGATGCCTATAGCAGAGCTTAAA-----CAGACCTCATATTACTTTTCTCATTACTGTTGGCAAAATGACTgaaaggatttcatgtt
s HiC_scaffold_1 136519859 1146 + 233722169 TCAAGGAACCATCTCAAAAAACATAATATTTTGGGGTCATTTTATGTTTCTACAATACTGCAATTATGACTGTATTGATAGCATTATAACACTTAATTTATGTTTAACAATTAAGCCAATTTTTTCTTGCTCAACTGGGTAATAATTCTAGATATTATTAATATTACAGCAAGCCCAGGGCTGGTCAGTTTCTCAATGGGATAGTTTATCTGGGGTCACATTTTGATTAATGTCATATTTTAAGTTAATAAAGCACTATAAACATTTG--ACTTTTTAGCATATCTAAATAAATCTCATATTTATTACATGATAGTGTAA--CTACAACATGCATATTAACAGCTACTCCTGTAACTATGATG----CTGTTTCATCAAAAGATGCCAACAGCAT--------TGTGATACAAACCTAAGGATATAAATACTGCGAATGATTAATGCCTCGGAAATGCAATATTATTCCAATAATTGATGCTGAACATGTTAGAGCTCCCAAAATTCCCCAAAAGCCTTATTCATTTCCTCAAGGTGAGCTACTAAAACATTAAATGAATTATTCGCTCTCTTGGAGACCTTGGAAATAGATTAACCTTCGATAATTTTG--------------ACTGACCTTTCCCCTCTT--------CCAACCACTGATGTGATCCATGTCTGTTGTTTGAAACTCAGtacactgtttttccttttgtatcaCATCCTCCCCTCCATCAGTATTGAAATGG-------TTTGCCAATCTTTCC------------CTCTAAAAATACACTA-----TCCTCATTTCTTGAAAGTATGGCTGTGGTAGCTATACGGACCATTGGGAGGGCTCTTAGTGGCGCAGATCCAATAGGAATACTGGGTCCACAG---------------AGTGGCTTGGAAGATACCAGGAGGTAGCACGCAGGCCAATCAGGAGGTAAATGTTTTATTACGATAAACACTTGCCATGAGGAAGCGAATACATACTTGCTGTCTATTCGAGATCTAGAACTTTTCACTTGTCTGGAAATTTTTGATTTGTACAATATGAAGCCAAAATTCCAACTTCCATAGTGGTTATGTAGATagacaagaaaaaagcaaaagtacaaaGTGT--AGCTAGTATTTATAGTGAAGTTTAAAGGAAGTGAACTTATCAATACTCTAAGAATTAATATGGAATAAGTTACTGAAATAATATCATATT

a score=116836
s chr3           149947409 4834 + 160039680 [encoded data, 5213 characters]
s HiC_scaffold_1 136524568 4960 + 233722169 [encoded data, 5213 characters]

a score=47753
s chr3           149956762 1588 + 160039680 attacatttttatattaattaataCATTTACTTGATATTCTACAGAACAGCCTATTTATAATACCACCTGAAAAATCAACGCAGGAAACAGTAGTTCCCCTCACTGC--TACTGCCTCTAGCTGGTGTATGCATTTAATGCCATC-------AGCACTCTAAGGCACTTGTGTTGCAGTCTTTCCAGCTCAGCAATATGCACAGAGAAGTAATTGCCATGCTTATTAATCATCAACAGTTTCTGTCACTGTCAGACCACAAATATTAAATTGTGCTCTCCTTAAATCCCCGTTTTTTGATATTAAAATATCTTTAACTTCATCACAGCTCGTTGAACAGTCCACTCCTTTCAGCTATTAATCTCACTTTACAGCCTCCCTGGCCAAGTCATTCACTTTAAAAGGACTTCCCTTTTGCCATCAT-GTAAAGACCAAA-----------TGGCTCTTTCTAAACCTCAAAAGGGAAGGAAGTGAGCTATTCTTTATTACACTTTATTATGTCCTTTTAAAAAtcttatcatgtattagcagtaatattcatgacacaggagtacacttataatagtcagctctcatggttatcaaaaaggttcattttagcatttaatcaactctaaaagcaattcattgctttggatattccccacgcaatgaccattatccACAAG---TACGTTCCTTTTCACCTAGAGCAGCA---TGGTATAGGGGGTGGAACATGGTTCCAG----GAGGGACTTACCAGACTTTTAAAAGGGCATTTTAATTTCCATAATAGCTTCTCCAAGGAGCCGGCTGAATGGTCCTTTAATCTACCAAGTTGGGGGAAAAAAAAAAAAAAACCTTAAAAGCACTGTGTTGCTCTCTGTATTTAGGACCCCTTTCAGGAAATGAGCA-GGTGTCTTGACATGACCTCAAGCAAGACTGAGTTATGTACTTGTGGAAGAAGCTTGTT--TTATGG---TAGTATTGATTCATAGAAAGCTCTACCCCATCTAAAGCCTGCCCTCACATGCCTGTGATGCCTACTACTCTTTCTAATGGGAAC--ACTCCGTAGAAGCAGGCTCCCTGAGTCTAAGTGAAGGGATGGATTTGAACTTCTGAAAGTGAGTATACCTCTAAATGTCTATTTCCATCCCACCCATCCCAAAGGGCATTGTTGCCGAGCGCCTCAAGGG-CAGATGAGCTCTCCCTAACTTCTCCTCCCTATTGCTGTGTTGTTTTAGCCTGATGTAAGTACAGATGTAGTAAGTTCTCCTGTGGAGCATCCCATTTCTTTCTCACTGTGAAGTCGAAGATACTGAACCTGAAGG---ATCATTTCTATGGTACC--CTGAAATGCAAAAGATTGTCTAGACTATTACATATGACTGTACTGTA-TATTTAGCCACTGATTATACTGTATGCATTATTATTT-TATTTGTTA-------GGCTCTCTACACCTCTAATGCTTTTTTAGCATGTTGGTAATCCTTTTATGTCT-----------TTGTGCTGCTTACTTTCCTTGAATTTTGCAACTCAGACCTACAAAAATGAGTGAAGAAAATCTGTTTATCAATGTACTTCAACCCACTTCTGTTATTACTTCTATGTCTGACCTCTCATCTGCATCCCTGATACTAT
s HiC_scaffold_1 136533265 1570 + 233722169 attacattttcaca----------aatgtgtTTGAgcttttaaataactgaatatctgAAATACAATTTGAAATGTTGACTCAAAATACAATAGTTCACTTTTCTGTAGTAACTCTTCcagttattgtat---ttttatttcatctattaTAAGCATTAAAAAGCACT--------GTTCTCCCCAGCTAAGCAATGTATAGAAAGAGGCA-----TCTACTCATTAATTGACAAAAGTTTCTGTCACTTTCAGCCTACAAATGTTAAATTGTATTCTCCTCAAAGCCC---TTTTGgatattaaaatatctttaaccTCATCATGGCCCATTGTGTAGTCCATTCTTTGAAGCTATTAATCTCCTTACATAACCTCCCCAGCCAAGCCATTCACTTTAAAAGGACTTCCCTTTTGCCTTCATTATAAAGACCAAAGGCAAAGCCAATAGCTCTTTCTGAACCTCAAAAGGAGAGGAAGTGATCTATTCTTTAC-ACACTTTATTgtgtccttttaaaaatcttatcaTGCATTAGCAGTAATATTCATGACACTGGAGTACACTTACAATAGCCATCTCTCCTGGTTATCAAAAAGCTTCACTTTAgcatttaatca--tttaaaagCCATTCATTGCTTTGGATAGTCACTGGGCAATGAATATTATCCAtaggctttaaaaaatttttaatatagaaaagGAAGATGGTAT-GAGGATGAAGCTGAGCTCTAGCTAGTAGGGACTTACCTGACTTTTAAAAGGGCATTTTGATTTTCATAATAGCTTCTGCAAGGAGCCTGCTGAATGGCCATTTAGATTCCAAAGTTTGGG------------AAAACCTTAAAAGCATTGTCTTGCCCTCTGTATtcagaagtcctttgaggaaaTAGCTAGGGTATCTTGAGATGGCCTAAGG--AGGCTGAGTTATGACTTTGGGATATATGTCTTTTCCTCCTGGGATGAACATCGAGAGCCAGAAGAGTCTGTCAGATCC-AATCTCCTCTTTATATGTCACT-ATACCTATTGTTCCTTCTAACAGGAATGGGTTTCTTAGAAACGTATTCATTGAATTTATGCTAGG----AGATTTGAATTTCTAATAAAGAATGGTCCCTGAC---CCTCCTCCCATATCACTTATCTCAGAGAACTTTATTTTGGAGTCCTCTGAGAACCAGCCAAGCAACTATTGTTATTTCATTACAATTACAATGTTG--TTAGTCTGACACAAGTAGAGGTTCAATCTGAATTTCTGAAAACCATCAAACCTGTCGCTGAGCCCAAAGTTTATAGCACTGA--CAGAAAACACATCATATCTCTCTCAACAATTCAAAATCTAAACATCGTGTTTATCATTATCTGCCA-TGCAGTGTAGCATTTTACACTTGATTAAACCTTAT-TATTactacttgtattttctgaatcTATGTTTCCTTACGTTTATGACcccttacttatttttttataatttcttcggTCCTTCTGAAATCAGTTGTG-TGACTACTTTCC----------AAACTCACACCTTCGAAAACAA--TAAGGAAATTTGTCT----ATGAACTTTAATTACCTTCAGATTTCCCT----TATCTGCACTCTAATCTGATGTCCTTTTACTAT

a score=54894
s chr3           149959130 2284 + 160039680 aagctgagcaatccaggtcacacaaatgttgacacagaagcctaagttcagaaggttatgga-aggagggcctggaggagtatgactaaagttaagctgaagaaagacttttAACTAATATAAACACACCTC--TACCTTCTGGCTCTAATGCACAAAACTGGGCTCTGAAT--TTCCAGATTATATTTTATTCTGTGCC----CAAACAACTCAGGTTAGTAATTATTT-----------------TAACTTTCAATGTACATCTGGAAACAATGAATCTCAGATTAATCAAA-TCTCATCACTATAAGGCAGAAAATAAGGTCAACACTAGGTCTGGCTGACTACAGAATTGCATCCTTGCCACTTGACAATGAGCTAA-GAGGCTTCAGAAAAG--------TCTCAACAGCATTGTGTGACTCAGTGGGCTACTAGACGTCAAGCATCCATTCAATGGGATAATAATATCCACAAGGCTCAGACAATA------------------TGAAATATAGACATTC--TTCAAAATATTGGCCTTGGGAACTCACCCAAATACGTGACTTTCACCCAGTATGGATGTCTAAAAGTCATGAGATATATTCTCTATCATCATGGAGCAGAAATTCAAAAATAAAATGAGTATTATTTAAACAAAAAATGAGATGCCCTATTTTTAAACTATGTGTCTAAGTTCAGGGAAATGAACTTTTTATTTTCCCTTTTACTGACTACACTGTCAAGATGTGGCTGTGAGCTCTTCTCTTACAGAGACATATTACA------------TATTTGTTTAAAATTTCAAATATTCAGATTTCTTTTTGCTGTAAACCAA-CACCACAGACACCCCCCTT---GTATAACCACTTTGTTCTTCTGGGTGAGAGGCTGGCAAGCAAACAAGGAGCCGTATGT------GATGGCCAACATGCAAGCATCATTCTCATTTACATTTCTGAATGACAGGGTGGTTGGATTTCCCCACAGGAAAGTTGCACCCAAAATTGATCAAGTTCAGCATCATCAACAGATGTCCCTAAAACCATTAGCAACTAATGGATTGCATAAAGGATGCTAATAGCTCATTTGTCTACTCTAAATCCCATCAACTCAACCTTTAAAACCCCTACTTTCTTCTCATTACAAAATTAAGGCCATTGTCCTTTAATTTTTAAATGATGTGTATTTCAAATCAATTAAGGCCAAAAGACCAATTATCTGTTGGATTTGTGGCAGCCAAAGTGCTCTGAATAGCTGCTGGAAAGAGCTAACTTGAGTAGAACAGGCTGTGGACTGATGAATCAGGCAAAGGAACCAAAAAGCAGATGCATGCAATGTTAACGTATGCATGTTAGCTCCCAAAGGACTCTTAAAGAAGATGTGTGTGCCCCCTTGCTACAGTTCCCAGAGCTTTGTAATAATGAAAGTTTATATTTAAAGGTTCCTACCTTTTC--TCTTCCTCTTTGAGGTGTTTAAATTTTT------------TTCTCTCTTGTACCT-------TATTGTTACATACCAACCTTAAAGTTTTAGTAGCTATGGTCATCATCCATGAAACTTTCTGTAATT-AAACATAGTGCTTATTTATGCTAGTTAGCCTTAGACTGAAACCACTAGATTTTTTCGAGCCTTATGTTT-----ATCATCTAGAATGGTACATGTGACCCTAATTGCAGTCAGATAAATGCACACATCTCTGCAAAATTTCAGTGTGCTTATTGCAATGCTTCAGAAGGTTGCAGTCTTGGGATTTTAATGCATTTTTTACTTGTCACCCTGTCACTGAATAGGAAGCTATATTTAGTGAGTTAAGAATAATGGCTTTACTGTTGCTCCTGGTAAACAGCTACACGAATGCAAATCTGAGGTAAGGAAGCAAGTTTGGAAATGTGAGCTACTTCAGCTACATGATATATTCTTGAAATTGCTATTCTGCAATAAGCATTCCCTTATTTTTATGCATTCTGACTTCATCTAACATATTTTATTGGAAAAAATAACAAGCTTTTTACTTAGAATTTAATTGCTTAAGTCTTAGCATATGAATAAAGAATATTTTAAATTTGATTTAATACCTCCTGATTGTTAAA--CTTAATTAAAGTAAGCTAATTTTGAAAAAGACTAAATTAAAGGGGGTATGTAAGGGGACGCC--TGATGAGCTAAAAGCCTTATTCCCCATTTTTAAAAAGTTAAAATATAAATTGCACACAGTAAAATAATCTT--TAACATACAATTATTTCAGTTTTGGCAAAGAACCATGATTGTCTGGCCACTAGTAAG----AATAATGGAGCATTACTA------CCAAGCCAAAACTCCCTAGGTAACTAAATAGCCTGT-TTCCACTTTCACTCTCAATC
s HiC_scaffold_1 136535423 2290 + 233722169 AAACTAAGCATTCAAATCTAGACAAGAATGGACACTGAAGCCCAAGAGCAAAAGGTTCTCAAGAAGCAGATTTGGAGGACCTTGACTAAAGTTTTATTAAGGACAGATTCTTTGTCAGTAAATATATAGGTAGGTACCAGCTAGCTATAATTCATCAAAATGTGCT-TGAGTAAGTGCTCATGCTATTTTACTCAGTGCTACAACAAGTGAATCATGCCcgtaagtgtatatatatatatatatatatatatatatatatatatcaggacAAAATGAATAGAGAGCTAGCCAGGGTCTTGCCATTGTAAG-CACAGTGAAGGGTCAAATCCAGGTCTGGCTGGC------ATCATACTTTTGCTTGTAGGCATCAAGGGAGCAAGGTTTCAGGAAAGGTGTGGTATGGTAAGAATGTTGC-TGTCACACTGGG-----AGTAGGCAGGCCCC-------TGGGATAGTAATAGTCATGAAACAGGACCAATGGAGAGAAGCAATGACAGGTGAAGGGAAGAGTTTCCCTGTGGGCTACTTGGCACTGAAAATGGCCCAGTTGCTTTGCCCT-------------TGTTGGAGAGC----AGATAACTTAATTA-------GGGCTGGAGATTCAGAGTCAAAATTAATATTATCGAGAAAAAATATAACATGCATTGTTTTTGC-CCACACATTTAGGTTTGAGAGACCTACTATAttgtattgc--tttatttattatagttttgtaCTACA-CAATGGTCTTTAAACTTACAGAAA-ATATTGCAAGATTAACTTGTCATCTGTGATAAAGTTGGCAACTTCAAAGCT----TTACTTTAAATCAAATATTGTGCACATTCTTCTTCTTGTTTTACCATTTT-------TGATTGACAAATTAG------AATCAGGGGTCTTGTTCTATGAAGATGATAAGCATGTGAGCA--ATACTTGTTTAAATTTCTGAATGA---ATTGGTTGAATTTCCCAATGGTAAAGTTGCACCTACAGCTGATCAACTTCAGTGTCACCAACAGATGTCCCCAAA-CCGTTAGCAACTAATGGATTGTTTTAAGGATGTTAATAGCTCATTTGTCTAGTCAAAACCCCATCAACTCAACCTTGAAAAACCGTACTTTCTAGTCATTAGAAAATTGAGTCCAttgtcctttaatttttaaatgacatgtATTTCAAATCAATTAAGGCCGAAATACCAATTATCTGGTGAATGTGTGACAACCAAAGTATTTTGAATAGCTGATTAAAAAAGATAGCTAGAGGGTGGCAGGCTATGTACTGATGAATCAGGTAGAGAAACCGAAAAGGAAATGTGGGTAAACTTAATAGAAATATGTGAGCTCCCAAGGGCCTGTTAAGTAAGATGTGTATGCCTTCCTCCAATAGCTCCCAGTGGATTTTAATAATGAAAGCTTATGTGTAAGGGCttctgtcttttttatatttctcttagaGGTTTGTAAATATTTATGGCTTCAAAGTTCTCAATTGCATCTGGTTCTATGTTGTTTTTCCCCTATC------TCTCAAAACTTATGGTTATACTCTTCAGTGtcttttgtaattaaaatataactttcaTTATTCATtgttaa----aaaatgcaa-------attttttc---tcttctggttTCTCCATCATCTGTAACGATATATCTAATCCAAATAATGATCAG----ATTCACATTGCTTAGCAAAATTTTAGAAGGTTCATTGCAATTATTCAAGAACCTATTGTGGTGAGATTTTAATATAGTTTTGA-TTGTTGCAGTATCACTTAA-AGGTGATTA-ATTCAGCAAGTCAGGAGCAATGGCTTTACCATCACTTCTGCAAAGCAATTCAGCAAATACAAGTATGTGGACAGGAAGCATATTTGAAGAGATAAGGTATTTCTACTTCATCTTATACTCCTGAACTTCTTATTCTATAGGAAATAGCCCTCTACTTTTATGCATACTGACTTCATTTAACACATTTCATcacaaa----aataagattttagcttaaaaaataaat-ctcaaa---cagttcagaaataaagaatatttcagATTTGATTTAATCCCATCCAATTATTAAACTCTTCATTTAACTGAAGtatttttgaagg-----aaaacaaTGAGAGTAGGTCAGGGAGTGCCCTTGTTGAATAAAAAGCTCTATTTCATA-TGTTAAAACATTGAGATATACTAAAGATACAGGAAAATGACCTTTGTAGTATACAATTA-TGCATGTTTGACAAATGCATA-GATCATACAACCATTATCAAGATAAAGTCATAAAATATTATCattgattcaaagaaaaaatttctatAGTCACTTTCTAGTCCATCTTCTGCTCTCACCTTTGCTC

a score=27631
s chr3           149964295 2289 + 160039680 TTTTATGTCCATTTTGAGGTAGATGTAG-GTTTTCCCTAGCTTTCTATCCACAAAACAAAGACAGTGGTAGCAATTTAATG--TTTCATAATT-TAAGTTGTATCAGTGTTAGAGATGTACATGTAAAAAGGCAACATGACAAGGAGGGGGTTTATATT-TTTTATATGCTGTGTGTTGACACAGGCAGCAGAATGTATTGTATGTAAGCAAGTAGTATGATTGTATGTAAGCAAGTACTATGAAAGATATAAAATACCTGCTAGACTTACA------AAGTTATAAATAAACAGG-------TACAGTTATTACTAAATGGAGGTAACCTAG-----------TATTTTCTTTAGTAATGTCCCCAGTATAATAAGGCAAGAGTTTCCTT--------------ACAAATATCCACAATTTAGGGGAATAGGAGTTATTGAAATGTTTAATGTCATGCCTCTTTGGAT-TCCTAATCTAAA-----CATTTTTAATAGAGCATATGCTGACATATTTAGATGGCTTCTGAGTGTCGAAGACTATAGGATTATTTTC------------------------------------CTCCATGGTTTT--------------AGAGACTTAGT-AGCTGTTATGGGAAATTTGGCATAAAATTCCCAT-AGAAAAATATTCATGGTATTCTCCAAAATGAGACTTTGCTTTAAATATCCATGAT----TTCATAAGCATTTAAAAATTAGACAATATTTTGCAT-----------GAAATAAAGGTTTTGTGTTCTGATTGTGCCAGAAAAGCAGGCGACGGGATTAATTTGGGGCACACATGTTGAGCTGGCTTTCTTGCCATGGGTGGTTCTAATAAAGAAATATTTAAATATGAACCTTCTGGCTTTTATTCCAAAAATGGAAATATCAGAAATTAAATAGCTGTCCTGCTTCAATTATGTTATATAATACATA--GAGTATAATGGACCACAGCTTGGATTGGAATTTTGTTTATTAAT-GAAATCAACCTTCATTATTCAAAGACAAAAATAGGTACAAGCATGAATGTTAGATATGGTATTCAATGAAAATTTTAGGCA----GTGTAATGAGTTCAATGCTGTTCCATCTTACAC----AAAAGTGAAAAAAAAAACTTTTTACAAAATTTTAACCAGCACCTACCTACCTCGGAAGCATCACACACAATGGACACACAGATTGATATATTTTCATAACTAAG-GTTCTAGTTCAAACAGAAATCCAAAATCTGCAAA---------------------TACTGCATCCTGTGTTGACTTTAGATAGTTTTTAAATTTTTATATGTAT-------------------TAAG------------CCTCCTTATAGGTGCTCTTTGCTTTCTGAAT------------TTTTGTTAGATATATT-CACTACTTCCTA-----------GGTGGTTGGCTACCATTTATG--TTCACTG-----------------TTTCCTGTGGCCTTCTTTTGTGAAGATATAGCA----TGCTTCATCATATGACAGCCAT------GTATGGATG------ACCACTTATAATGGTGGTGAGCAGTGGAATGAATTACC-------------------TGGTCACATCTGAGGTAGAGAAG---TACTCACTG--TGTTTAGCACATGCTT-------AGGAGGACATTGCTCATAT-----AGAACACACTTTTATAGTCTTT-----TCTAGGCA----GACTTAAGATGAAGGTTTAGGAATTTGTGCATACACTTGAATGTACTTCATGAAATTTTAAGAAATGAGTGtccttgttaata-----tattttctgttaggttcatatgaataattctggtgtgtt-ttcgtggt-cttgttttcattttagtgtacattgtcctgatagatcatgtagaaaaacatctgtaattttaattcttaactcaaatgtcttcttgtgtgaactgtctatttaagCAATCAGGCTATCTATCCTCTAC---AAATGTGCCTTAGTAATTGGTTATTAAAGAATGTCATGATTCACAAAATCTGGAAAATAGAAGATTTTCTGCTTAACATAGTGAACATCTTGCAGTCCATGAGCATCTTTTGTTGTATTTGAATGTGATTTTGATAAACCAAA---CTTGAGTTTAAGAACTCCTAATACATTAGGTTTCTTTCTTGTGATCAACTTTTGTTTTTTCTCCTTGAGAAATCTTTATCTGCTCATCCC--------------TCTCTATTTTTGTAAAAGTTACATTTATTTAGCTTATAGAATCTGACCTACAATGGACATTTACTTGGTTAGGTCAAA----ATTAGGCAGGAATAAATACAAACATTTTCTTCAACAAAGGAGTAGACAGCATCAAAGAAAGGGCTCAGCACCTTGATTTCAGAAGAGTATGATGTCACCTTCATCTTAAGTC-AATGAGGATTTGTCTTTGGATCTATTCAGCTCCATTGTAAACCCAGTCTG-TGATGGATCAATATGCCACTGTCTACGTCCTTACATTTTATAGATGATGTTGATGCATGGAGTAA
s HiC_scaffold_1 136539878 2453 + 233722169 TTTTACGTTAGTATTGGAGTAAGTACAATACTTTTCCTCGCTTTCTGTACGTAAGTCAAAGACAG-AGTGAAAATTTAATGAGTTTTGTAATCATTAAATATTTCTGAGCTAGAAAAGTA-ATGGAGTAGTATAACATGCTAATGCAAAGGATTGTGTTATTTTGCTTGAGATGTATATATGCAGG-----------------TGTGAAGGAATATGTGAAGTGTCTAtaaa-atgcatgatgaaatgcATAA--TACTCCGTGGGCTTTAATGGAGTAAGTTTTTATTACAAAGGAGACTAATATTGTGATTCCT-------TGTCATCTGGCTTAACGAAATTCTTTTCTACAACAG-GAACTCAATACATACAAGTAAGGTTTTAGTGTAGCAAATgtgaaaagaaacatttacagTCCATGG-AACAAAAGCTGCtgaaatatttaaatggaaaTCACTATGAAAATTCTAATCTCAATGCTACATTTATAATGTAGCAT--GATTATGTGAT-AGCTGGCCCTTAGGCTTTGAATCCTGTgaaatttctttctatctttcttccttccttccttcctttctttcttttctttattttttttttttctttcagaagaaGATCCATTTGGTTGTTCTGAGAAACTCAGCATAAAATGTCCATtagaaaaatacacataatatCTTCCATAATAAGTTTTTGGTTTAAATAcctaagatgatttttaaaagcctgcAAAG-TTAGACAAATTAGTGCATTTCTAACACAGATAATGGAGGTTATATTTTCTGATTATGCTTAAAAAACTGGTGATGGAATTGATTTGGGGCACACATGGTGAGTTTGCTTTCTTGCCATGAGTAgctctaataa--aaatatttaaatatgaaccttctgttttttattccagaaatggaaatatcagaaattaaatatttatc---ccTCCCTCATGTAATATCATACACAATGTGTATAATGGAGCACAGCTTGGATTGGAATTCTGTTTATTAACAGAAGCAAAACTTCATGAtccaaaaa-gaaaatatgcaagggcctaaaaataagat---------aataacagTTTTGGACATCATGTTGAAGAAGTGAAA---CTTCACATCTCAcacttctaaaagt------------ttttcattgAAGTTTAATAAACATCTA--------GGAAGCATCATCTATCACAAGTTTACAGCTTGATGtatttttatggctaaatagCCTAGTGTAAACAGggggataaaatttaaaaaaaaccaacagaTTCTCCAGAGCACTTGACTCCACAGTAGTcctggttattttttctttttctctatttttcttctggTTACTACTCCTATGAGAGCCATGGTCCACCTCACCCCTGACACCCCTAGCAGTGTGGATTGGGGCATATGATTTTgaatactatactatactatactatactatactatactatactatactatagtatatgaattcAGTGGCTCTGGAtgtattaatttccttttgaCATTTATTTGCT-AGATTTACCAAATTTTCCTACCCAGATAAAAATCATTGGTCCTTATTGCTGTGTGGTATCACTC----TGTTTCTGAATAATGGTGTGATTTACCCAAAGAGAGGCAGTTGTGTTATTGCCATATGCAGTAGGGGAGACATGTTCTATGATTGTTTTGCACATGTCTCAATCAGAGGTAAGAACTG-TCAAGTGAGCAGGTATACATATTTTTAGCTTCTGTGAATTCTGTCATAATGACCTGGGAATTGGTTTTACCAAATGGTACA-ACACATCAGTGT--------GAGTTTCAGGAACTTCATGTCCTTACTAACACTTCTCATTTTCCATCATTCTGAATTTAGCCATTCTAGTGTGTGACTTGTGGTACATATTGCTActttaatttatgttttcctaATAT-----------AAATTGATGTTATGTTTCTTGGTAATTTAGATATTTTCTTATGGGAAATGTATGTCCAAGT-----TTCTGTTTTACCTCAACTGGAAATG----TTAAATGTTTCTTATTAATGATTGC-----------ATAGCTTGAAAATTCATCATTTACCTCT----------ATCTTCTCTCAATTTGAAAGCTCCTTTCTTCACTGTTAATGGACA----GATAAGTGGAAGTTCTTAAGTTTAAAATTACCTGACTTATCAACTT------TTATGATTCTCTTTCAGGCATCTGATAAAAGGAAACTTCACCTAGTCACCTCATAAAACTTTCCTGTATTTGTCTTCTTAAAAGCT--ATTGATTTACAATTCATGTTTTGATCTGTTATTGATCTCCAGTTAATT-TCTCAAATATTATTAGGAAGGAATCCA-ACAGATTTTTTGGTATGTAATGGACTAAGCTCCATTTAATAAAAAG---AGCATTCATTTCTCAAAACACCACAGTGTCACTTCTATCCTAAATCAAATAAGGATTCATGTGTGGATCTGTTCTGTTCTAATGGCAACCTAGTTTATTGTTGTATAAATATGACACTCTCTATAC-------TTTTATTGTAGTTACTGATATACACAGTAA

a score=34302
s chr3           149968007 2260 + 160039680 gaaactgcaaaacggagaaagtgaaggggaccatgatttggaggaagatgCCAAG---AGTGATAAT---TTGTGAGGAACATGG--ATACTATTTGTTGAAAGCTT-GGTTTTCTTGAGGAGATCAAATATTATTAACCAAACATGGAAATAAAAGAATTTGAGTG-----------AAGAGTGAGAGAATTGTAAAATATCCCAAGGAAGTAGGAATGTCTGGGCTCTGGTCATATTATCTATCCACTTTCCACTAGTGGGAGGCAACCTCAGAGCCATGGGCACATGA---GATCAGACCATTTGTCACCCTTGTTTAGTTCTTCGAGAC--------------GTTGGTAGATTTAGTAGTGAATTTTTTCT-----TTTCAGTTATGGAAAAAGTAtctggtaattgctcatttttcttgtcacttcagacttaagcatgatattcaattaccatgtcctcagagcccttgggtgcttcgcagtcccttgttggttggcttaagccaa---aacgctgcccacatgaagcgttttaacattgcttccattaggacggtgccatctgttttctgAGGAAAAGCAGAATTCGTACCAGATGTAGCCTCAAGAAAGAAAC-TTAAAATCAAGATTGTGGAGGTTTTTCCTGTTTATATATTTTAGAAGCGCATGTATAATCTGATTTGTATGGCAAAAGGTGACAATGAACAAGTATTGGCATCTTGGTTCCAATAAATGGTCAGCAGTGAGCCTAGGGAAGGAAATATTGATGGGAGGTGTGGCTTTGGAGTCAGCTGTCCATGGCATTTAGCAGCTATGATAACAGTAGGTATTATGTCGTTTGCAACACGATATAGTTTTTCCAAACATCTGAGAGAGTAGAC--AGAAAAATTGAAATGTTCATTGTCTT-GATCCCATTTGCAATGTTCAG------------AGGGAAATTTTATACAAGTCCCTTTTTCCTTGAAGCCATAGAATGTAGCCCAAGGCTTGACTGTAGCAATAGTCAAACTTCCAAACTAATTAAAAGTTATGATTCTAACAGAAATTTCAGTT---AACATGACCTTGTTGGGAGAGAATAGAGGACTGGACGGAGGGTAAATTTACTAGAGAAGCAGCAGATTAAATTGATAAATTTGTATTC-----TAAACCACCTGAAACTGGCA---GTGACTGAGTCTTCTTTCTGTATAGGCTTTGCCAGCTGCCTCTTAGTCAAGTTC-AGTTACCAT--GGGCTCATCCTCGCCGATGTGAATGTCCTGTAGTTCTACTGAAAGATTAGGATATCA--GCAACTTACAAAATGAAAGAGGCAGA--AACCTACAAGGCAAAATTGTCTTTCAGTTTAAACAGTTGTAGGATCTTGTCAATCTATATAAAGAACAGTTGGGAGGTCAAAAATAAGAGAGGTCCTAATGGTGGTAGCCCAAGAAACATGATACAGCAGATGTAAATGCATTAAATATATTGAAATGAATGTATTAAGTGTAATAAATATGACAGGATTTTGGTTGGTTTAAACTACAAGTGAGCATTAATAATATGTGTGACTGGTGAATTGAAGGCAAACATACAGTGGGTGAATGTTAGTTGCTGGAATTTGCAGGAAAACCTCAGTCCGAAGATTGCCTGAAGGCTGAGGAGATGTTAAGTACTGTATGTT-------ACTACTCTCTAACTTCAGTTCTAGGAAAACCTGGAACATCAACATTTCTCTGCATCT---CAGAAATTAGTTGATTGCTGTATTTTCATAAGCTTAAGCTACTAGTAAG--ATTCTCTCCT-GAATTGGGTCCCGGAGTTCCCATAGGAGAA---GAATCCAGACACAGCAGAATAAACATGGTACTTTTCTATTATATTGAAAATAGGCAGTTACCATAACACACTTCAGATAGTGGTCCCAACCAGAGC------------------------ATTATCCCCAGATG-------------AAATATATAATAA-----------------------------ATTCATCA------------------------------------------------------------------------TTAGTTCTAGACAGGAGTCATTTCACATAATTCAGGTGTTCTCATGGAAAAAGCAA---GTCCCTTGAAAAATTATTGTTCAGAATAACCCCAAGTGAGCCATGCTGTAAATTTC-TTTTAGAGAAATCTAGAGCAATTTATGAGGCTGCTGTC-CATGGGATAGA---TTAAA--------CCAAGACCAGTAGATTCGGAAATTCTGCCTATAAAATTTTCCTAATGTCATGAAGACAAAAGCAGCCTGTATATTTGGACCTT-TACAGATTAGAAGAT-----ATTCTCACCTTATAccaagctcatgatggttatttttcaatttc-agaatgaacaatgaaaatagatatgcttaataaacaacaaaatactcatactgtttctttgact
s HiC_scaffold_1 136547433 2409 + 233722169 GAAATTGACAGAAACAGAAATTAAGG-----CATGTTGTGTGGGTAGAGATCATGCTGAGTTACAACATGGTGCTGGGAATCTGGGAACATTTTCTCCTGAAAGTTTTGGTTTTCTCAGGGAAATTGAAGGTCATCAATTTCAAGAGGAAAAGGGGGAGAATGTATGTAGAATATGTAAAGAGGGAGAATATAGCATACTCATCGAGCACAGTGGAAAAACATGGCCCATAACCTTACT---------CTTTTCTT--------GGC--CATGAAATCAGTGGAGAGATGGAGTGGTCAGACTTGTTG-CTCCCCAGCTTACTTCTGCCAGACTGAAAGTGGACAGAGATGGTATTTCCAGTGGATAGCTCTTTTTGGCAGCTTCAGCTCCCTCCAAAA-ATCTATTAATTGTTCCTTTTTCTTGCCACTTCTAGCCTAAAGATGGTAACGACTTACCATTGCCTCATAGCCCTGGGGTGCGTCATGGTCCCTTG---GTTTATTTAAGCCAAGAAAATGTTGCCCACATTAAGCTTTTCTTAATTA-TCCCATTAGGGTG-TGCCATCTGTTTTCTGGCTAAAAAAGTAATTGGTACCAGGAGTACCCCCAAGAAAGGAACCTTAAAATTAAGATGATG-----CGTCTTTGTTTACAAATTTTAGTAGAACATTTACTACTTTATTGGCAGGGTGGGGAG-GATAATGAGCAAGTGTTGGCATATCAGTTCCAAAAACTGATCACCAGTAAATACACATAAGGAAGTAGTGATGGAAGGCATGGCTTTGTGATCAAGTGTCAA------TTAGTAGCTATGGTAACAGTGGGTGTCAGGGAGTTTGCAGCCTGAGCTAGTTTCTCTGAGGATCATAGAGagcagacaaagagaaaatgaaatgctgATTGTCTCAGATGCCAATTGCAGTGTtcagatagaaatttaaaaggcaattttaaaggagtttcttgtcttctttagactTAGGCTCCAGCCT-GGGCCTGGTGATTACCACAGTAGAACTTCAGAACTAATTAAATGTTCAATTCCTACCAGATTTCTAAGCTAAGAACAGGCTCTAGTTGACCAAGAGTGAGGCACAGAATTGA---CAAAgt-----gaaggacagaaaaagaatctGAGAAATTCGAATTCCCATGTATACTTCC--AACTTTGCAAATAAGACGCAG-CTCCTTGCTGCATAACCCAGATGATTTGGCCCTTGGTAAAATTCTAATTATCCTCATGACTCACTCCTACAATCTTTTATGCCCCAGTGTTCAACGAAAAGAGCTAGATGCCAGTGTAGTTCAAATAGGGAAATGGGAATACTAATCTGGAAG---AAATAGTCTATATGTTCAAA------GAGAATCTTGCCAATTTGTATCCATG--AGTCTAGAGAGCACACATGAGAGGTATTCTAATGTTGTTAGGCCAAGGAACATGGCATA-TAGACCACTAGAAACTGAGTTTATTGAAATACATGTACTAA-------CAACAT-ACAggatttgtgttgttttaaac--------------aGTAGAAAGCTTAGACTGTGAACAGAAGTCAGACTTAGAGTAAGTAAAAGTGAGATGCAGGAATTTGCAGAACTTACTGAATAAAAAAAGTGCTTGAACATTCAGAAACTATCGGGATCAATGCATTCTCTAAAACCCTTTCCTAATGTTGTGTCTAGGGAAACCTGGAAGACACGGGTTTGTTGAAATCTTCATATACATTGCGTGGTGTTTGTGCTTCCAT-AGCTGGATATGATGGTAGGAAATGATGTAATGGAATTGGATTTCCCAATTTCCTTGGGTACACTGGAAGCCTGGCTCA-TAGAACAACAGAGGTAGCTAACTGTTAGCTTAAAAAGAGG-AACTATTATATTA-ACTTCAGAGTCAGGTCC--ATCAGAGCTCCCTCCAAACAGTAATATCCAATATTGTTAATTGATGATAGTATCtctaaaagtaaacaataaatgaGGAAGCTATTAAGATGCTGTTTGATATGCATCAGTGAGAAAATTTGCTAAGTCTAGTAAGCAGAAAATTCGATTCAAGTTGTTATAAAGGATTTATAGTCTTACTTGAATTCTGGATAGAATTCATGTTACAGAATTCAAGT-TGCTGATGGACAaaacgatttttttttttgaggagtatTCTTCAGTATAACTAT-GGTGAATTTTCCTCTGTATTTTGTCCCAATGAAGCATGTAGCATCTTACAGGAGGGAAATCATAGAggaaaaagagttaaaaatcaaCCCTAAGGTTTGCAGACACAG--ATTGTGGCCTTATACTGTTCCC-------TGGAAACTTGAAATACACTTATAACTGAAGCTTGTAAAGGGCAGAAGATAAATGAGTCTTGGTACAAGTCAAACTCATGGTTGTTATTTTTCCTCTGCTGGAATGATCAgcaaaaatatatgcatttaataAGTAAC-AGTTAATCATATTATTTCCTTAATT

a score=54351
s chr3           149984920 3043 + 160039680 TAAACTTTTAAAAATATGTTCACCACAGTACTTCCATGATTTTATCTTCTGG-------------ACAAAATTCTAAAATATTCTACTTCTCTAATATTAAGATACTAAAT-AATCAT-----AGCTTATTCAT--CAAATTGGTAAATAAATCACAAATCCTAAAGTACTGTGTTTAAAAGAACAACAAGCTGTGTGAGAGATTGCAATTGAAAAATCTTTATCATAATATGAAATAGTGTTAAATATA--TTTTAACTT--ATGTTTTCATACTAAAACT-GAGTGACAACATTGTTTCTGATAATGCAAA---AATTCAGTTGGATTTATTTTCTTTTGCATCATAAATATCATATACTGTTATAAATATTA--TATGACAGAATCATTTGTCTTAATAAGTGGTCTGTGAAGAGCTG-AAAAATATTTCTCCAAAAATGTGTCTGAGGTTGTCTGACTTAATGTTTAATACTTTTGCCTAAATTATGAGCAAGTATTCACTTTGTCAAATTTTCAAAATCAAATTTAATTACATTAGAAGACATCCATCATAC--TGTGACATTCTATTATGTCTTCATTTACGTTATTTCCAAAATTCTTATGTAAAAAAAAAAAACACATTGTGTTTCACTCTGAATTAGATTATCTCAGTCATAGCACCATTGTTCATTTTTACAGAGGACTAGATGCATAAGGCACTCCTTCCTTCCTCCACAGTCTAGATCATGCACAATGTAGTCACACTTCTGATTTTATTCAGAGAATAGTCCTCAAACTCAGAAACTCAAACACCTGGCAGGGGGTTGAATGAGATAAAGAGAAGGATGGAGACAGTGCTCAAATTTATATGAACACAACCAGAAGGGTCTGGACGGGCGATGATTGATGCTTTAGGGGCTCTGACACATCCTGAGATTAAAAATTGGTTTTGAAAATGCCAGGTATCTGCCAACAATCTGAGAGAACTAAAGATATCTTTGCTGAGTATTTTGTTGATCAAGTATGATGTGTCAGACTTGAACTTATGTACACTCCAAGAGTCATCAATCTCTCCAAATTTTTAGCTCTCAGGAAAAATGAAAATCATG-AAAAAGTTACATTGAGGCCTGGAAAGATTCTTTTATTGGGATGTGGTTCCCTTTTAGAATAGAATCAATAGGAACAATGTATTTGTT---------GATTCTAACTTGTTTAATTTTTATTGTTTTGTTTCTGAATACACA-TGTCACTAGGGAAGAATAGAGGCCTCCAATCCTATGGCTGATATG-TAACTGTCAGTTGATTAATACCACAGTAATAGACTTTTAAGGTTGGAAATAATTTGGAGACATGTTCAAATGATTAACTGCA---TTCAAAATTAAAATTTTCAAAGGCACAA-----ACCAACCTG-CAGCTGGTTAAAGATAGTCAGGAGA--------CATCATTTACTTTATCAGAAATTggagctagagaaaatacccaaggagctaaagggatctgcaaccctataggtggaacaacatt---atgaactaaccagtaccctggag--ctcttgactctagctgcatatgtatcaaaagatggcctagtcagccatcactggaaagagaggcccatcggacttgcaaact-ttatatgccccag-----tacagggggacgc-----------------cagggccaaaaagcagaag---------tgggtg------ggtaggggagtgggggggggagggtatgggggact-tttgggatagcat---------tggaaatgtaaatgaggaacatatctaaaaaaaaaaAAGAATGTCAAGTGAAACCCAAAGTGGCCTATAAGGTGGATTGCCCTACCCTACTATTTCTGTGTCTTTG-----GAAAAATTAGGAAATATTCTTTTACCCTTATGAGTATAAAGGAAGACAGGAGTAATCATACAGTAATTAACATAGCTCAACAATATAATAGAATCTCATTTAATTCTAACTGGATGGTGAGTCTGGATTATA----CAGTTAAATAATCTGTTATA---CAAGCAAGA-GGGAAGCTGAAGTGTGGGTGAATGGGTCAGAGACTGGGAGGGTGGGAAAAATC----AGAGGCACAGA-AGGAACCCAG-------------ATCAATGTTGATTGTTCTCAGTTAATATGCAATCATTCCACACATAATCAAAAATG------TGCATACAGAATGTGTGTTGCAGCAAATACCTCGTAAAATGTAAGTTCACAATATTAGAGGTCAGGGAAGTAGCAAAGAAGTCT--ACATGTTAGAAAGAAGCCAACAAGAAATAAGTTTTGCTTCATTCCGTTTTATTTCATTGATTCAGCAACGCCAATTTCATTTTGAAGAGG---AGAAATTAGTGTGGCACATTTTTCTTATTCATCATCCACTG-TTCTAAATTCAGTG----------------------TTTACATTTAAATT--AGATATTCTAA--------ACCTCCTCCTGAGTGTTTTCTCTCACACACTAAAATGT--TGTCATGCTGTCTTCActctttcctctctctctctctctctctGACATCCATTTAGTGGACACATAAAGGACACTCTCAGTGAG-GAGCCCTCTCCTAGCTGCTACT-AACACAGTCTCCGCACTTCTGTGCTGTGCTCCTGACCTCTCTAGAGTGGCTGAATCTGCAGCTTTGCTTGGTGTTTTCTTTAGTGTTGTATCTACTTCATCCTCATCATTCTATGCACCATACTCTGTTTTTGTCCAAATGTTGAGTTGTACTATG------CCCTCTGAATTGCTTTGCTCTTCTAT-GTAAATCTTAATTTGGTATGTTTAAATATTTCCGATCATTCTGTCTTGGAAGATAAAGTCAATATTTCATTTCATGACTTCACTG---ATCTGCTTTCACAATAAGGAGCTTGCACT-GGGCTTTCTGATAACAACCAAGCCAACTTTTCAAACATTTCTACATTTTGACATTGTCTGTTCGATGTTGTTCATGTATTTTTATCTTCCTGTCTACTGAGTTGATCCTTGCATTGAAATTCAGGATCTGAACTTTCAAGTGGAATATA-------------TGTAAAATGAATAGAACATTCTGGAAGGCAATGAAGTCATATCAATTTC-----CATCATTCCCTTTATGATTAAGTTCTTCACTGTAAGCCTGAGCTAAATGACACTCATGTAGCCA-----AAAGCCAGCAGTACAAGGGCA
s HiC_scaffold_1 136553712 3083 + 233722169 TAAACTTCTAAATCTACTTTGCCACCAAATGTTCCATTTTTTTGCCACCTAATTTATATCTACTCATGTCATTCCAAACTGTTCTGTCTTT-----ATCAAAATATTAACTTGATCATGCTACAGATAATTCACTACAACTACTTAATTAGTTCACAactcataaataa---tatttaacagaataataaattttatagaaGATTGTCATTGAAAAatctttat---aatataaaatcatgtaaagaatcatttttaacttttatttttttgttctgaaaCTTGAGTG-CAACATTATTTCTCATAATCCAAAGCAAATTCAGTTGGATTTGTCTTGTTTtacatcaagaagatcatatactattataaatatgaaacatGGCACAGTCATTTATCTTAATAAGTGCTTTGTGAAGATCTGAAAAAACATCTCTTCACAAAAGTGCCGGAGA-TATGAGACTTATTGTATAATATTTCTGACTAAATTATGAGCAAGCATTGactttgtcaaaattttaaaatcaaatttaattgCATTAGAAGACATCCATCATACTTTGTGACATTGTATTATGTCTTCATTTGTGTTATTtcctaaatgtttattt-------aaaaacacattgtGTATCACCCTGAATTAAATTATGAAAGTCATAGCATTGTTTTTCA-TCTTGCAgggaaatacaaatataaaaca---tttctttgtgcTATTGTGTAGATTACATAAAATGTGATTATGCTGCAGATTTTATTCATGAAATAG---TCAAACTCAGAAAA-CAGGGAAGCAACAGAGAAGTGAATGAGGTGAGGATGAGGATAGGGACACTGCTCGAactcatataaataaaaatggaa---------------aatatagatGC--TAGAAATAATGACATATCTcaagtttaaaaattgttttttaaaatgccaaatgtCTGCCAATAAAGTGTTAGACCTAA--ATAtctttgtgaaatattttcttgatCAGGTATGATGTTTCAGACCTTAATTTAAGAATAGACT-ATATTAACCACCCTATCCAAATTTTTAGCTCTGAGTTAGGACAAAACTCaagtaaaaaattatatttggaaagtaaaaga-aaatttattggatcacattttctttttagattacAGTTAGTAAATAAAGGGCATTATTTCCATACATAAAATCtaa--tatttaataattctttttctttttattaatagaaaCTTTTACAAGGGAAAAATAGACATATTTTGCAGTATCATTAAAAAATTAACCAATAGTTGATT-----CACAGCAATAGACATGTAAGATTGTAAGTGATGCTGAATTATATTCAGACAACAGTCTAAATAGTTTAAAGTTAAAATTTCCAAAGGTGCAAAAAGCACCACTCTGTCAGCTgtttaaaatcattcaaaacaagagatTGCATCTCTTTTTTCACTACTCATTTGAACTAATGGCAAGTCC-------ACACAGTAATTTATGA---TATGACTTGagtgatttttcagtgttttcagcAAAATTGTGGAATTTTCTCCAAGTTATCATTTTCTATACCAAATAATG--TAAACTAAATATTCTTGATAATGCAATCTCATTAACCTTACTAAGTGGTATGTGTCATAGATAGATAAACAAAGACACAGCTATGCATACATGCATAAGGTTTTAAAGCTGCAGATAAAATTATGGCCGCTACTCATTTGATTAATATGGGAAGATTCATCTGagttattgttttgggttcaATGTACTTTCATGGAACTTTAAATATGGAA------GAGTAAAGCAAAAAAGTGT-GAGTGGAgatgaaagaaaaggaggaggaaga----------------------ggaatttGAAGCAGGGAAAGGGGACACTGCTTGCTTATTCTGGTGA--ATGAACGGGGCC--------CTGCCCAGGGACT---GCAGGTGGcctttataat----tctttttaaagtc---------------tCCAGATAATAACAGCAAGAAAACAACAGATCACAGTCCTAGTATGACATGAAACTGAATTCT----------ATCAACAACTTGAAAGAGATGTATCATCTCCAAAACCTCCAGACAGGAACTCAGTCCTGCTCATACTATGAATATTAACACATTATTATTAATAC---ATTAATCAATATATTATTTAACAGGTTGTATTATATACA--------GTTAAATATAATGCTTTACAgcaattaattttagaaattaagaaatgaattAAGGAATTATTAAATTTTCACATGTTACTGTGGAGCTTTCCACAAaggaattttgtttta-tctgtctTGTCAAAT---------GAAGTGAATTCAATTTTGAATCAACACAGAAATGATGgt----catttttctccttaattttcaATTGTTTCTAAATACAAGGAAGCTTCAGGAAATTCAAGAATCTTCCAATTAAATTCAAGAAATTctaatatttattcctttttcttatgGATTTTTCTTCTCATATTATCATggaatttaaaagtgtttttacCTTGGCTTTTTACTCTAT--------------CATTTGGTGGGCAGAAAAAgcacaatataaataaataaacaacctcCTAAGTTTTAAGAAATGCAATCTCTTCATTTCTGTGATATTTTCCTGTACTCCCAAGGATCACTGTATTTGCTGCTGTGCTTGAGTATTTCTGT-GTGCTATGCCCTCTTTA---TCATCTTTATATCTCTCATGCTCCTAACAAATTCCAATCTGGGGTTGTAGTATGATAGTTCGCACTGAATTGATTTATTCTtccataatacatcttaatttgatgtgtttaaatattttacatcattCTGTCTGAACAGAGTAagtaaatatttcattccatTACCTCTCTAGTCATCCAGCTTTACAACAACGCACCAAAGCTCCAATTTTCAGATAACAACACAACT-CCCTTTcatgcatttctgttttcttacattttgttttcaa----atttatgtGTTCCTATCTACTGATCCGTGGAACTGTGGCTCGCAGTGGAATTCCACATCTAAAATTTTGGAAGGAAAATAGGTGAATAAAAACTATAAACCAAGGAGAAAACCCCCAAAGGAAATCTGGCCACAACCATGTCCTTAGCTTCTATTCTTTGAGGGTTCATCTCATCACTGCAAATCTAAG--AAGAAACTTTCCTGTCATCACCATCATAGCCAGCAGTGGAAGGGCA

a score=83325
s chr3           150003465 5723 + 160039680 [encoded data, 6086 characters]
s HiC_scaffold_1 136569104 5351 + 233722169 [encoded data, 6086 characters]

a score=91165
s chr3           150010587 5723 + 160039680 [encoded data, 6602 characters]
s HiC_scaffold_1 136581039 6203 + 233722169 [encoded data, 6602 characters]

a score=90046
s chr3           150016738 5566 + 160039680 [encoded data, 6180 characters]
s HiC_scaffold_1 136588729 5702 + 233722169 [encoded data, 6180 characters]

a score=7985
s chr3           150021607 174 + 160039680 GCAGGCTCTGGGACAGCACACCTCTGCCTGCAGGCAGGTATCTGCAGATGATATGCTGCAGGTGTTTGCCTGCAGGAACTCATTGAAAGTCAATGCAAATGAGGCCGTTTTCCCTTGCAGAAGACATTAACCTGCAGGAACCTTGTAGGCACAGGTGTATTTTGGGACCATAAT
s HiC_scaffold_1 102991702 172 + 233722169 GCAGCCTCCAGAA--ACACACCTGGGTCTCTGGGCAGTCGTCTGCAGGCGATTGGCTCCAGGTGTTTACCAGTGGGAACCCATTGAAAGTCAATGCAATTTAGAGCAATTTCTCTGGCAGTGGAAATTAACCTGCAGGAATCTGCCCGCAACAGGTGTATTTTAGGGCAGTCAT

a score=20509
s chr3           150022522 1106 + 160039680 TCCATAGCATCTACTCTGGCTGAATCAAACTCTATA--GCAAATGCTTAAAACTAAAGCCTTCTTTAAATGCACACTGGAGTCAAATGCAAGTTATTTTCATGAAATTTAAGACAGCATTGGCGGGGGTTGAAAAGAAGCTACCAAGCCTTAAGCTTATCTTGCAACATTCAAATTAAAATATACATTTGACATTTGGAGGGGATTTAGCTCTGCTAAAATTTTACATGCACGTGGG-TGCTTAATAAATAATTTTTGGTGACAAGCCAGGACCATGCTGTATATAGGGACTGTGCATATGCTTTTTGATATTAATGAAGAAACATATGTTTAACAATATTTCCCTCAAAGCATGGGACATATTGCGTCAACCCTTTAGTGAGCATCCCCTCC--AAAAAGGCCTCCTCATCTCGCAAGGAAAGCGCTTTAACATCTAGGAAAGTTCTCTT------------ATGTGCTTCTTCTTCATGCTTGCCAATAGTGTAACCTTCAAAACCATAAATGTGATAGGGCTTGTGTGGCTTCAAAGCTTCGCGATCTGTCACAGGGCACCTGGGACTGTTCCCCTGTTTACAGTTGGACTCTCATGCAGTTTTCCTCTCTTGACTTTCACAGGGCTTTGAGGCAGCTATTAATAATAACATTGTTTACCAGTATCTGCCTACATCACCACTTTTCACACCTCAGGGATCTTTTTAGTACTATTTAATCAGCCCAAAATGTGATTGCTAAACTTCTCTATAAGGTAAAGTAGATTTAGACTTGGGATCCATGTTTGGAGCCTTCTTCTCAGACTCTTTGGCC-----CTTTATCAATCCATTCTGATTCATCTCAGTTAATTTCCAAGTAGGCTACTTGGATGAGTGCTCCCATACTGACCTTGCCCTTTCCGCACTGAATGGAGACTA------TAGCAA-AGAAAGAGAGGTTGTTATGATACAACTTTGACGATACTCATCTCA-TCTGTTCAGCTCATACTGGATCCTCAACA--GTAAATAGCCTTTAA---TTGAAGAAATATGTT--TTTTGTGGGATGGAGTTGAACACTACTGATGCATATCATAATAATTTGTAAAATAT-ATGTGGAGAAAGAAGAAACATATTCAATTACCTGAGCTCC
s HiC_scaffold_1 136603694  939 + 233722169 TCTACAGTGTGCATTCTTGTTGAATCTAATTGTGTACagtaaattcttaaaaa-ataatctgCTG-----GAACAGTAGAGTTGAATGCATGCGGTACTCttgaaatttaagagaaaatcACTGGAAGTGAGTGAGAAACT---------------TAT------GCATTcgaattaaaatatatatttgacatTTGGAAGGGATTTAGCGCTGCTAAAATTTCATGTCCAAGTGGGGTGCTTAATAAATAAGTTTTGATGATAAGCCAAAAATGTGCTGTATATAGGGATTGAACATATGCTCcatgataataatgataaaatatatgtttaataattttttcatcCAACCTTGGGATATATTGTCTCCATTCTTTATTGAACATCTCCTCCAAAAAAAGAGCTCCTTAActtgaaacaaaaatgttttaaaatctagaaatattCTCTCTAAAATCTAGAAATG---ttcttcttcctgcttcccaatACTGTAACTTCCAAAA--ATATATTGGCTGGTTCCtactttgctttaaaaat--------------------------------------ctttcagtCTAATCATCCTGGAATGT----------------------------------------------------------------------------GTtttccaaacttc-----tctgcctggTAAACTTCAATCAG-----GATATGATTGC-------CCCTATAAAAAAAAGTA---------------------TTGGGACCGTTCTTCCTAGATTC-CTGACCATCCTCTTCCTTGTCCCATTCCATTTCACCC---TTAACTTTTAAACTGGTGACTCTAATTTTTACCCTCACACTATTATTGACTTACCTTTATTGAGTGTGGGCTAGCGCTCTGGCAACAGGGAGAAGTACGGTTAGATAACATTCTTCACAAGACTCTTCTCATTCTG-------AATACTTAATTTTACTCATTATAAATAGATATGAAACTCGGACgcaatgtgtttgttttatgggTTGAATTGGCAC----CTTAAACTTA----AGTGA--TGTAGAATACAATGTAGAGAGGGTAGAACATTATTCAATGCCTTCAGCTCC

a score=34790
s chr3           150035687 3525 + 160039680 aaaaaaGAAAATACTCAGGGTGTTTGTTCTTTCCTACCATATACACTTAAACCCTTTCTTAGGAATGATTGACGATATGAATTCTCAGTTCACATATTTCAAAGGGAAATCATGGTTTTACTTGTTGAACC------------TACATTTATTCATTTAATCTCCAAGCCCCTCTTGTGGCTGCTAAGACACGTTTTCAGCAGGGCTTGGGTTCTGTTTGTTTGCATGTGTGTGAAGGCTGCTTTTATTTATTATTTCAATCATTTCAGCTGTTGATGGCTCATGATAGGACAATTAACAGAATTGGCAGAGTATGTTGAATCAGCTGTCATCACAAACAACGCTTTGTGAAAAAAAAA---GTAAAAAGAATGACGGGAGCGAAGAGGGGTCACTATCCACATAATGAACAAAAATCAGATGAAAGTGAGCATTGCTGGACATTTGATGCACAGAATATTCAAAATCTTACACTATTTTTCAGTATCTA--TTTTAATTCTTAGGAAGGAAACAGAAGGAGATGCCAT------AAAGAAAGTCAAGTCAAGCACATATAAAAGTCACCAGCTTTTAAATATTTATGGCACTCTGTGAAGGGATTCTTGTAGATCACCAATTTAGCCAAAATGGAATGCCAAAGCATCAAGAATTTTCCTCCAGGACTTTTGACCTGAGAGGACTTCTCAGTTTCACTTGGGCTTATGCATTTTAGTTGTCCTTCTCAAAATAGAGATG-ACCCAAAGTCTACTCAGTTTTGAAAACTCAATTA-TAGCTCAATTTCATGAAGATAACATTACAGTTAAATATTAATTCTTTTATTTGTTTATTTATTAGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgtgtgCAGATACTGACAGAGGGCAAACAAAAGTACTGAGTCCCCCGgagctacggttacttgtgggtgtgggagactgacctcacatcatctggaaggcagtaaatgctttttagcatggagccaccccctcagtcccTTAAATAAATACTTCAAATAATTACCTGTGAGCCTATCCTGAACTCACTAATCTGAAGTTTATAAAACTGGATTTTAAATTAAGCTCATATTAGTTCACAGATAATATTCTATGCCT-TTGCTATTTTTTAC----CATCTTCACCACAGCAATTAAATAAAATGGCCCAC-AAAAAATTACAAG----AAGCATTTTCCTAAAACCATTGATCAAACTATAAAACTAGCTCTCACTTTATTAAAATCAAAATGTGTTCCTGCTAATTTTCTTTGTTATTATTTATTCAATGGCGACATAGTCAAG--CAGCACTCTTTATTATGCAATTAATTATTTAT-AATTGAATGGTGTTACAGTGACTTTTTT-CAACATCCTACTTAAATATCTAA-GAAAAATGCACTATCGGACTAAATTGACAGAGA--TAGTAAAG----CGCTGAATCTGCAAAGCATGCAATACTGTTTAGTTAACATCTTGGTCATATGTGcatacatgcctgcacataaacacacagaaataaatgtacatacacatgcacatacaggcacacacatgtctgcacatgcgcaagcacaaacacacacaAATCTGGAGTTTTCTACAGTACTTTCATTTTTGGATTTTTGTTGTTTATAATATCAAACTGTTGTTGCTGCTCTCTTATAGCATATTTATATGCAATTAATTGAGTGGTGCCGATTAAAACCATTCAGAAAATCATTTATCTA-GGGTAGACCTCTGTTGT---AT------TGACCTGA-GGTTTAAAATCTTACATTGCTGGTGTACATGAGATTGAGGAACCAGAATGTA-TGTACAGAAACATGAGGGTCATGCTTAAACATGTGCAACTGACA-GAGCAACATGATCCCAGACATGCCCTG---TATATAGACTTCAAGATAGCAA--TATCTACAGTATTGTAGATATGGGCCTAGtctctctctctctctctccctctctctctctgtctctctctgtatc--------------tctgtctc------------tctctctc-----tgtgtgtctctctctgtctctctctgtctctctgtctctctctctctctctgtctctctctctcATTGAGTTAACCTCTAGAAACTGAATGTATATAGTGTTTTCCTATCAGTATACACCTCAGTTGCTTACCTTTGTCCACACATT-CTAT-TTACATCAAACTCTCTTTTTTATTATGATTTCCATCTTTTCTTTATATCAAAGATTTTCAG--TGGTATTCTATGT-------------------ATATTCTAGGTGATCCACCCATTTTCCCTTTAATCC--ACTTTTCAAATGGTTGCATTTA--------------GACAGTCTGGCTTTTTCAGGAAATTTGCTCTTGTGCTTAACA---------------GAATTTTCTGACAGTTTCATTCCATTCATTTCAAGAATATCTACATTAAATTCCTGTTATTTTTTAACAGCTT-TCATGGGTAGAGCACATCTCTAGCCAATACAAGGTTGCAATAATCTTTAAAATTACATATATCATCACAACTCTTTGAAGTGTATCAAATCAGTAGGACAAATACAGCATCAGCACATATCCAATTAAGTCTTCATTATGCCGATTCATGTCAAG------GACTGAACAAGTTAGT-CTTTAAAAATATT---TGAGTTACTTTTTAAAACTGAAAAGGTGTAGGAATGATATATGTTAACAGAAAAAAAATGTTAGTTCATTCTAAATTAA----CATTCGTACATCAATTCTTTCCATTCCTTCCTGGA-------------------------------------------------------------------------TATTATGA------AAACTAACACCAAATATGCATATTGTATCCTGTGTTCTACTAAACAC-TCTTCTGTTTTTCATGGAGTTTGACATTACGGTATTTCTTT-----GCACTTTCTGAAGATG-----------TTATGTGTAATATTTAAGACATCAGCTCTGGATCCT--CTGTGGATGTACCACTATTGACACTCTTCTTTATTGTCTATATAACAACACATTTCGAAATGATTTAGGAAGCTCTTTGGACCTAAGTTCTGCCATCTATAATATA----TGAT----GTGACAGGTAGTTTTATCTGTGT---ACTTGAAAGTAGTTCTGGATAATAGGAAC----------ACAAACTTGGATCAAGTGGATTTCTAGC----TGTGGGTGTGTCTCATCAGTTGCCATGAAAATA-----AGAGCAATAAAGAAAGATCATCTCCACAAATAGAAATTTGCAGAACAGAATCTTTGAAATAGAACTACAGAATACTCAATGGGTCTTC--------------ACTTTTTTGGGGACTCATGGAAGATTT--ATGTCCCAACCTTTATAATGGTGCAAACCAATTCATCATACCAAA--------GATATGACAAATGAATAGAAAAGAATTGCCAAATGAATGATA-ATTTAGAATGAATGGACATGTTTCAGCATGTTTTGTGTGAGGATAAGTGTCTCAGATCCCCATCCCACCTTAAATAGAACTCTTCAAATCAAATATAAAATAATATTTTCTTCATATTAAAAATGTGGCCATCAGAAT-----TAGGAAACAAATTCTTTCAAAGTAAATATTGGCTAATGTTTCAATGT--------TTCTCC-CATATACTGAAAGCT----------GAAATGATCATTTAC-------------AAGAGTTGTCAGACATTTTGAAATTATTGAAAGGTCCCTGAttcaaatctctcaagaaag
s HiC_scaffold_1 136615991 3327 + 233722169 AAAATAAATGCTATtcaactcttttcttctttc-taccacatacttttaaattattctttaaaaatgattggcagcttgatttctaatttcacataCTTCACAGAGAAATTGGATTCCTTCTTGTTGAACTACACATTCTGTATGAATTTATGCATTTAATTTCTTAGATGCTTTTG---CTATCGGGACACATACTCAGCAGgattttggtttcatttcttt-cattgttctgaATGTTGCTTCAAGT----ATTTAGTTTGTCTCAACTGCTGATGCCTCATTACAGGACAGGTGACAGGACTGGCAGGAT-------------TGCAGCCtcagataacaattttaaaacacaaaatctgtattaaaaatatctaaaataggGAAGGAGCAT----------GCAACTAACTCTCACATAAAA-TGAGCTTACTTTCATATTTAATATGCAAAAG--TTAAGATGTTGC----TTTTCAAATGtccaaatttaatttcttaggaaagaaacaaaaatagatacCACGCAGCAAAAAAAAGGCCAGTCATGTGCTTACAAATCTAAATGAGATTTAAATTTTCAGCCCACTCACTGAT----CACTTGTAGACTGTCAATTTTGCCAAGGCGAAATAACCAAGCACTGTTCTCCTGCTTACTCTGCCCCTTATCGCAGAAGACTTCAAAGTTTCATTTGGGTTCAAACCTT------GGTATGCTCAGAATGTGGATTTGTTTAAATTCCATTCAGTTAC-AAGCCTAAATTAAGAGTTCAACTTCATAAAGATAAAATTGGTGCTAAATAAGAATTGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAATTAACTTGGAGCTTATTCTGGACCAGGTAATACATAGTTT---------GAGTTTAAATTAAATCCATACT-GTCCATGAAGTATACCCTATgaggattattattttttatttagctaCTTCAGTATAGCAATTAAATTAgatagaataagaaaaaattaaaaggaagaagcATTTTCATAAAGGCATTGATCAAACTTAAAAACTGGCtctcatgttattaaaattaaattgtgtTCCTGCTAATTTCCCTTGTTATTATTTATTCAAGGGCTATATAGTCAAATCCAGCCCTCTTTATTATGCAAttacttatttataaaatcaGTAGTGTTACAGTAACCTTTCTGCAACATCCAactaaaatgtttaatgaaagaTGTATTCTTGGTCTAAGTCGACAAAGAATTAGCAAAGATATTGCTGCATCAGCTAAATATCTCATACTGCTTAG--AGTATTTTGGT------------------------------------------------------------------------------TTCACATCCATAA--------------AAATCTG--GTTCTCTTTTCTAAATTTACTGTCAG--TTTCTTCAAATGGCGCATTAAGCTACTGCTTCTGCTGTTTCATAAATGCTTTTTAGGAGAATGATCAGTTATTGACAGTTAAAATCATGCAAAAAAGAGTTTACCTGTGAACAAAATGTTGTTGTTAAATTAAGTATGATCTAACACTTTAAAGTCTATTATTACCAGTGTATGCAAGAGTAATTCAGCAGGCTACCTTAGACAAAGATAGGAAGGCTATCTATAAAGATGTGCAGCTGACGTAATCAATGTAAT---AAATGTATCTGAGATTAGATAGATTTTAGGAAAGCAAATTTGTTACAGTCATAAACATACAATTTGA---TTTCTAGTTCTTCTGGCCTTTTCCACTTAGATAACTACTAGATACGGTGAAGCAGAAGTTTGTTTTATAGGGTTCTAATCTTCCTCCAAAGTATATGCCATTTCCTGATGATTTC-----CACTGACTTTCT-TCCCCCAAATTTTCCCTCAATCTTTTAGTCTTCGTTTCAATTCTCAAGCTA------------------------ATGTTGAGCACTCACTTTTGTCTGGAAATTGCCATCTTCCATCA--------TTCTTA---------------TTTCTTCACATCACAAATCTCCAAACTTGCATTCTCTATGATAAATTCGCAGCAGATAAAATGCGAGGAACCCTCTTCTGTTCCTCATTGTTTCTGCCATTTCAAACTGTCAAATTCAGTAACAAGAACCTCGACAAACT--CTCTACCAGGATTTTTATTGTGATGCTTAATGTTTCATACTCTATGTAAACTTTCTgacattgtattttcatttatttcaaaaa----------aaatctatgttaGTTTT-----GCTTCTAACTGGTATATCCTATCTAtaccaaatataaaattataataatattt-aaattagagAAACCAT---GACTATTTGAGG-ATGTCACACCTCT----CGTATACAGAACTAGTAGATATCCTGTCAAGATTTTGTCACTTCAAGTTATACTTTGTAGTTTGAATAGACATTCTAATACACTGAAAATTGTTCATGAGAGATTTTTAAGAAct-agaaaatgtataaaagatataTG----------GAAAATGACCATTCACAATGAACTAGTAACTATTTGCA---CTATTCTTACCTGTCCTTCCtgtattcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatattagtatggGGTCACAGGATAATCCTAAATATGAAT-TCATACCTTGCCTTTTTcaaagttcattttctgtt---------------aattgcgGGACTTTTTTCACAGGGACTTTTTTCAAATGTCCAACCCACATTTTGTGTAGTCATTAGAACTTAGATTTTGGAACCGAATTACCTACGCGTTACTTCTGGCCATGCTACTCATTGGCTATATAACCTTGCACT---AGGTTCCTTATTAAATTCTCCAAATCTCAGTTCTGTCTTCTGTAATATACAGCTGATTATAGTGACACACAGTTCATTTTGTGTTTCATCTTGGAGGATTTCTGAATGAGGTCAACATTTAAATCAATGAACTTTGAGTAAACAGATTGCTTTCCTCATGTGAGTCAACCTCATCCAATCAGTTGAAGATATCAGTAGAACAAAAACGAGGGACTCCCAGGGGAAGGTGAGCTCTCCAGCACCCTGCCTTTAGACTGGAGGTAGGT--------ATGGCTCTTCTAAGACCTCAGACTACTGTCTTA------CATTGCAGAGTTGAACTTACCAGCCTTCAtaattgtgcta------tttttataacaAATCTCCGTGTATGTGG-GCATATATGGAAATGTGTTCATATTTTTATGGTATATCTAGATCTAGTCTCTGTGATCTAGCA-----------------------TCAAACTTCCCTATCG--GTAAGTGAAGTCCTCAAAGACAAATACAAAATCACACGTACCatacattaaaaatacaataatgaaaatataaataaaatataaatgttt------taaatgtagaCTAAcatttaagtacattttaaattctcaGCATGCACTGAAAGATGTTGATaggagaactgattttttttctaggatTATATGATGGATTGGCAAGCA-TTTAAAACTAATGAAA-------GATTAAGGTCTCTAAAATAAG

a score=40967
s chr3           150043281 3778 + 160039680 [encoded data, 4441 characters]
s HiC_scaffold_1 136621869 4194 + 233722169 [encoded data, 4441 characters]

a score=98368
s chr3           150048657 3165 + 160039680 AGAGATTGAATATTGCTTTGTCAAGAAGGAAGCAAGACATCAAGGCTGGGAGTTGTAAAACTTACTCCCAATGTGCAGGTAGACAGCTAAAGCTTAGGAGCTAGATTGGGGGACATTGTGAAGACATTGGGTGACATTTCCAATGGGAAAGATGTATGTAAGTTG--------CTTGTGAGCTCTACCACTATGTCTAAGGCAAAGATGCAGATACAAGGATAGGTTCAGTTTCAATTCAAGCAACATCTAACCAATAAGCAGAAAGAAATTTGATAAAGCATTATCAGCTAAGGGCTTAGGTGACTGT----TGCATTGATACCAAGTAGGGAATTTTGAATATTGCTTTA--TCTTAACAGTAGTC--AAAATATTATTGGTATGTGGGCATTTTAAATGCTTGTTTTACTTTATGTATTTAAAAGCCTGTGAGAGTGGACAAAACTCCTTGCATCCTATGATTGAAAGAAGG--------CAATTCTGGTACTCTTTATATATTACAAGTGGTTTTTA-----AAAGC--TTT---TCTTGACACATCATGAGTTGGGTTAAAGCT----------TATATTCACCATCCTAGATTCTATATGGGAATAGTACAGGTTTCTCTCATTATACTTATCTGACTAAGGGTATATAATGT--------------------------CATATTTGAGAAAGCTATGGCT--------------------------------------------CAAATAGTTTTAAATTTTCAGTGAAGA------------------CCATC---------CAGAAAATAGACAAGAA-----------------------------------------------TTATCTCAAGGTTCAAGG----CCATGGAGGCAAAG------------GAGAGAAGGAATAGATGAAACCATGGAAAAGAATAAACACTGCAATGATTTGTTTTAAAGAGCTAATACAATGTAAA--TAAGTACTATTTCCATTAACAAATTTTTATTTCCatatatatatatatatatatatatatatatatatataGTCTCAAGAAAACACA--CAAAAATAATATAAGCAAAACTTCAATCCTATTTATACTCTATGGAATTGTTGAGTCATGCATTTTAATAAATATGTTTTAAATCAAATTGATTACAACAGAAGTGAGATTTGTACACTGTGTGTATAACCAATTTTAA-AGGAAAGATAATCGTCTTTGTATAAATGCATCTTTATAACATTATTTTTTTGCTAGTAACCTATTGTTGATATTGGTTTATACTTATCAAATAGCTGAGAATTTGCATTTAAATCAG--------------------------------TAATGTATCATCATGTCTATGGATTAAAAGTTTAGATA-------ACATTTTA-----------------------TTTTTTAAAAAATCTA-------------------------------------------------------------------ATGATGCAGCTCTCAGAATAGTAAGATGCTTAGCTTCTACTGAATGTATTTGCCTGTAAGATTTTGAGAAGATCTGAGACTCTGACCTTTCTATCCCCCAAACTAAGTGGACTTTT-AACATGAGCACATCTGGTTTATGTTCCCTAACCTCTGGCCTTTAAAAGCTTTCTTCCAAATTCACACAAAATACCACTCAGGATTGCTTGACATACTGACCCTTCCCTGTAGGTGGTGAGCTGAATAAAGTGATTCAGTGCCTTCAAGAATTTAACATGCATGTACCCTGTTAACATTA-CATTGTGGGGCGATTAGCACATGCCACACTTCATGCACATGTTTTGAACAATTTGAGTTTTTGAAGTTATAATTGTAAAATATTTTTTTGTCTTCTCTGAAGCTGATTTGCTCCTCCTGTAAATAATTATACTGGTATCATTATCTGGTAATTTAAAACAGGGAGCATTATATTAAAAATGTATGCTTTTTTGGGTTCTTT------------------------------CAAAGCTCCAATGTCATTACTAGGGATAAAGG----CACTGACAGGGTGGTCAACTTGAGTCCATAAATCTCTATGTCCAGTCAACATTTAA-AAACTCTTAGATATTCAATTGAGTTAAGCATTAAGTGGTGCATTGGCTAGGAAGATTTCATGTCTACAAGGCCCACTAATAAAACAGGCCGAGTTATTTGTGTAGACTGTAATTCCTCCTGACTGTGCCTTCCATTTGCCTCGAGGACATACCAGTTAAAAAGTGTTCAGCACACTACACCATGCATAACAGGTAATCTGCCTAATTAGATCCAATAAGGATGCTCTAAGTGAAATGCTGAAGAGTGCCTGTAACCTCTGCTTCACCCTCCCTCTGCACCAGGGCCTCTGAGATTGAAACTCCCCAGCCATTAACTCAAGTGTTTACACTCGAAGCTCAAATTCTGCTTTGCCAGAATGGCTCATTTCACATTTTATAAATCTGTTTTCTCATTTATAGGCAGAAAGTAATTCGTCAATGTTTCT--ATATTTTAGTTCTCAACTTGTTCTGATAGTGAACACACTAATATATCGTTACATTGGCAATCCATAATGCCAACATCACACTGTGGCTGGGC-TGTGAAACTCAGAGATCTATCTAATCAGATTTATATTCATATTTTCAGTGCATTCATTTGGTATATTTCAATGAATTATTAATTAGGACCAACAATAAAATATTATTTTGCTCAGATGCACAGCAATAGGAAAGATACCCCAGAGAAATTTATCTGACAGCTCGAATCAAAATGGCCCAGATTCACTCATAGGTTACGGATGCGACTCAGCATGATACATATTTGCTGATCAAAACCACTCAGTGTGTGTTTTTCGCAGCTTGTCAATGTTTTGTCAGAAGAACAAAAGACAAAGTTTAGCAGT----TCAAGAAACTTCAATTTAAAGATTAGTTTAAAAA-ATGACAGATGAATGCGGATGTTTTTCTGAGAAAATA--GAATTACACAGAACCTTGATAACTATGATTTTCCTTCAAGTAGCATATATACGACTGGAATTGTTACTACTTACAAGCAAACTACATATTATAATCTATTTGAACTAGTTCTATTGATATAAAAAG----ACCACCCATTAACATACTCCCTCCTAATTATTCTTTCCATTCTACTCAGGAAAATACTAAGAGAAGAACTTCATTTTAATCAGTGGCCCA--------TGTTTTCTGATTTTGCACATTAGACTGACGGCCAAGTCAATGC----TATGCATTCCATATGCATCACTAACGTGAGTTGGTGTCTTTCTCTAATCTGTGTACAGACT--TTCCGGTTGGCCTTTCTACAGAATTTGCTTTTCTCAGTCTTATAAATGTCTCAGT--TAAAATTTCTCCAATCTGTTGCTGGCATCTGTCATAGGGATATTTTAGAGACATCAACTCAGGTCTCACAGAGTTTTGGGTAGACCTTGGAACTCTTCAGTTGAGTGGCCAGTGT
s HiC_scaffold_1 136626679 3409 + 233722169 AGAGGCTCAGCATTACTTTTTCTGCAAGTCCCCAGAGTACTGAGGCTCTGAGATATACA-TGTATCCCGAATGTTCATGTAGCCAAATAAAAATCAGGAGCT--------------------------------CTTTTACTAAGGAAAGAAAGTAGACATGCCAGAAAACACCTTGAAGGCTTTTCCATAATATTTAATCCAATGATGAAGATGTGTGTCCAGTTTCCacttaaattcaa--aatattttagcaaTAAATAGAAGTTAAATTGATAAAGTATTGCAAATTAAAAGTTTAAGTAACTTCATTGTGCTATGGTACTAGGTAAGACATTTCAaatattatctttgttttttacattagTCCAAAGATATTGTTTTAATATAGGCATTTGAAATATGTGTTTCAATTTAGACATGTAAAAG---GCAAGAG-----------------ATTTGAAGATCAGAAGGAGAagataaaacaaatcaaatactTTCCAAGCTCTATAATCTTTTCTTAGGTAGAAACCAATTTAACTTCTGAGGCTTGATGAAT-GACTGAAAGTTAACAGGTGATTATAACTGTTGTAGCAGGTATGATGTTAGCATATTACATATAT-TCTCATTTTA-TCATCTTAC--AGGTCATATAATGTGAGTACTGTAGTCCTCATGTCCATGTTATAGCTGAGAAAGTTGAAGCTTGTAGAGGAAGTAAAAATAGTGATGATGTAATATGGATTTGTATCAATTTGTATCAATTCTCCAAGGtggatgtaattattatgtatcacaatcATATGttgatagaaaataaatgaaatacagagcTAAAACATTTTACCTAGGATATTTCAACTAATGTGTAGCTTCATCTCAAATTGCCAGAATAATTATGGCTTAAAAAAGTCTTTCCTTTGAAATTAAGGTTACATGCAGCCA-GGTAACATCTTAGCACTGGGTTCATTTGTTC-AAGAAGTTGGGAAAATGTAAAATCAAGGAC-AGTTTCATAAAGAAATACCTATTTC----------------TACATGAAGAGTTGCATACATAGT------AAAACACAGtctaaaa---------caaaaactcaaagtaATTTATATCTTACAGAGTTACTGATGCATGAATGT-AATaactattttataa------ttaattttagtaGAAGTCAGCATTATGCATCATATGTATCATTATCCTAGACATGGAAGACGTGTGTTCTCATCTCAACATATCTTTACCAAATT-----CTTGTTAATAACCAATTTATGACCCAAATTTATATTTGACAAATAGTTGAGAATTTACATTTAAATCAGGTACTTGCAATTAATATTATGATTGTAATAAATAATTTGGCACCATTTctatagaataaaattttaagtatcgTGACGCATTGTAGGGAATTTGCAGTGATTAAGATGTTTTGTAAGTACTCTATATGTAGAAAAGAATCGTGTACACCGCAGACCAGAGCAAATATTTCATCTAGGAAATAAAGAAGTCGGTGAGGCAgcactcagaaaaataaaatgcttaggtTCCATGGAATGTGTTTGacagtaagatttttaaaagatctaagAGGCTGACCTTCCTTCCCCCCAAACTAagtagactttttaaaatgagcaCATCTGGTTTATGTTCCTAAACCTCTGCCCTTTCAAGGCTTTGTTCCCAATTCACACAAAATACCATTCAGGATTGCTTGACACAGTGACCCTTCCCTGTAGGTGGTTAAGGGAATGAAGTGATTAAATAGATTCAGGAATTTAGCATGTATGTAGCAAGTTAATATTCTCATCCTGAAATGATTAGTAAACAACACTCATCCTGCATAT--TTCAACTACTTTTACTTTTTGaagttataattataaaatattactgtgtttcaC--GAAGCAAGTTTGTCTTTCTTGCAAACAACTGTACTGGTACCATTATCTAGTAATTTAGAACAAAAGACATACTGTTAAaaactaaagtttttttttttttttcttcttcttttctttcttttttttccccccacaaaGCTTc-------ccaggagagaaaaaaagaaccacCAAAAGGGTGGTCAAGTTGGCTCTATAAATCGAGAT-CCCATTCAGCATGTAACAAACCCTTTGGTACTCAATTGAGTTAAACATGAAATGGAGCATTGGAAAGGA-GATTTCATTTCTAGGAGGCCCACTAATAAAACACTCTGAGTTATTTGTGTAGAATGTAATTCTTTCTGACTTCGCCCTCCATTTGCCTCGAGGACATACCAGTTTAAAAGTGTTCAGCACACTGCACCATGCATAACAGGTAATCTGCCTAATTAAATCCTATAAGGATGTTCTAAGGAGAATGCTGCAGAGCGCCTGTAACCTCGCCTTCACTCTCCCCATGCACCAGAGCTTCTGAGGTTGAAAAGCCCCAGCCATTAACTCAAGTGTTTACACTTGAAGCTCAAATTCTACTTTGCCAGAcaggctcatttt-ttttttacaaatctatTTTCTCATTGATGGTCTGTAAGTAATTCATCAATTCTTTTAGATATTATACTTCTCAATTTGTTCTGATAGTGCATGATCTAATATATGACT------GTGGTTTGTACTGCAAAAATCATCCTGTGACTGGAAGCGCTAAACTCAGAG----ATATAATAAGATTTACATGCATATGTTGAGTGCATTCATTTGGTATATTTCAATGAATTATTAATTATGaccaacaataaaatattattttgctcaAATGCACAGCAATAGGAAAGATGCCTGAGAAAAATTTATCTGACAGCTCAAAACAAAGTGGCCAAAACCTACTCCTCGCTCACTCATCCGCCGCAGCGTGGTGCATATTCACCCATCAAAAACACTCAGGATGTGTTTTTCTCAGCTTGTCAATGTTTCCTCAAGAGAATAAAAGCCCAACTTTAGCATTAATATAgagaattttctatttaatgaTTAAATAGGAAGTATGATAGATGAATAACAA-GTTTTTAGGGGAAACTCCTCAATTAtattcaaaattgataatatGGATTTTCGTTCAACTAACATCCATGTGGCCAGAATCATTACCATACAAAACCAAATTGTATATTATGTCTTATTTGATCTATTTCTATTGACACAAAAATTTTCAGTATATCTTATCCTACTTTCTTGTAATCATCCTCTCCTTTCTACTAAGGAAAATTCTAAGGGATAAACCTCATGTTAATCAATGacccatctgttttttttttcttattgcaaACATTAAACTGATTGCCAAATCAATACTACTTATGCATTCTACATTCATTTTTCa----agtttgcttctttttaaaattctaagatgGATTGCTTTAGACTGCACTTTGAAGGCATGTTGTTTCTCTA---CTGTGCAATAGTTCAATAGTAAA---CCTCCAGCCAATTGCC--TAGCAGTCTTGGAGGTACCTC----------ACTGAGGCAACATAGTATACT--------CTTGAGTCACTTAAGCTGATTGACCAGTGT

a score=64239
s chr3           150057746 3587 + 160039680 AATGGCTTAT-TTTATTATTCATTATCTGTGC--TCAAGGCCTTATTTATATTTTGTACCA--TTTTCATCAAAATATCACATAGTTACTTCTTCAATGGCAATTTTCG---------TATGTTTTGTTACCAACATCCTTCTTTTTTCGTCAACCTTATTTCTTTGGTCCTAATACAACCAAGAAACTCACTCAACACAAGTAAAAATCAATGTGTACATCATGGAATGTAGATAGGAAATCATGTGTTTAGTTTTTCACCAAGACAAGTCTTCAT------AGCCCTAATCATATGGAAATTCTAGAACTCTCTTCGATAAAACTTCATCTACTGAGGTCTCCTAATTAAGATTTTT-TATATTAGCTGCTTA-----GTAAAATTT-----ATTATCACTGCTGTAA-GATATCTATACCCTTTTAT-TTATGACTGCACTTTC---TGCCTAAAACTAG--ACATATTTGGAAGAACCTTATCACTAATTCCCTTTTTATATCATTAGTAATACCTACACTT-----------ACAATAAT-----------AAATTCCTAGTTCTTAGATGATATTAAAACTAATCCATATTATTTCAAACAGGATTATATTCACAAAGCAATCTTTAAAACATTCTGTATAAGCTAGGTTTTAAATTTTTCTATATATCAATCTTATAATTATGACTAGATAATACTTTGGCATACAATTTTATGCTTAATTCTTCCATCTTTATTTTTTTCCTTTCACATTTTTTTTTTGAAATTTGAGAGTT---------------------------AGAAGGCATATGGTCTGACTTTAAATGCAACAAAAATTCTATTAAGA----TAGAATTTATGTT------AATAATCCTAGTATATAAAAAAGAATGAGA----AGCCAACAAG---TCCCCCAGATGAGGAGGACAGCACACACAGTGCAGCCTAAGGAGTATCTC-----CAGTCAGATTGTCACTGT--CAAGTGCACC--AATAATAT--ACTCTCATTCTACCCCATTGTTTTTCTGCTCATAGACCTGAGAATTGTGCACATATTACAAAGATGAAGATTAAATTGAAATTTAGAGAATAGCTATAGGTCAATTGTACT-CCCATTTATGTTTAAGGTAGCTTTAGAAAACATTTTCAAAAGCACTGGAAGTCCGTTTTCTACATACCTTTGTTTATGAATTGAGATTTGTAGATTTAGATATTTTCAGAAACCAGTCATGCTCTTCCTAATATTGTGAGTGCATTTAAACAAATGTTTTACTGTTTAAAATTTCCAAGTTTATTAATTTGGTACTTACTATTATGTTAGGGAGGAAAACAGGAAGGGCTTGTTGTAACTCTCCTGTTTTATTTCTCTCTGGGTTCATGGAGATCACCTTTGTAAAAACAATACTAGTTTTCTGTTATTGAGGAACAGTGTTATATTCTATACACAATGTGTGTTAATTCAAAG-------CCTAGAATTAAATGCAAAGCTCTGAATGAAAGACTTAACTTTACAGAGTAAGATCTTAAGGGA-------TTTGTAAATAATCTGACTATTCGAAAGAGCATCTCAGATTTGTCA-TCTTTTCTTGATTTCAAACTCTTAACATTTTAGTCTACTGGTTTTCATTTCCTCTCTCATGAGACTGAATGTTTCAGAAAAGTGACCTTCTAATGTGGTAAATTGAAAACTAACTGCTAATTGCTAATTGTTATTGCAATTCTTGACCTGATCTCAGGAGCTGGGAACCAAACCTCTGTCTCTAGGGTGTAAGGAGTTCTAATGGGCAGCCTCCAAGCTGACAC--AGAGCACATACCAGCAATTGAGT-AACTTTAAAGTGTTACCTTAATGAACAGCATTGGAAATAATGTGTTTAGAAGCTCAAACTGGGTGAATGTACTTTGC-------TGACAGCAGTTAAGTACAGAATCTCTCTATTCATTTACTTAGAGTCAAGAAGCACATTAGTG-AGAAATGTATCAGAAAGTCCCACCCCTTCCATACATGTATAATAGCTTCAAGCTGCTCACAGTTACGTTGTCCCTGAGTGTGGGGTGGCATATGTTGTAGTTAACTGGTCAGTATAGTGGTTCTTGACATGGCACTTTTTTTTTTCTGTTACTGGTAACGACAATGAAAAGGTATTTCCAAGCAATTAAGCCATAACTCCTGCTGGTTTGGAAACCACGAACCTTCAAATTCCCATTCAAATTGTTCTTCACTTACCACTAGCAGGGAAACA---------ATAAAGTACAGCTTGGTTAATCAAAGCCACAATGAAATCTATTGTTAAAGGTTTTAAATGTCTTTAGTATAGGTGAAGTGCAAAACTGTTCACATGGCAAATTAGCTACAGAACTCTACCATTACCTCATTTTCTCTT--------------GA---AGTTTATGACATCTTGGGTTT---AATATATGTCATGACGAATGCCAATAGCCAAATAAATAAAAAAAAAGTTTATGTATCTGGGATT--GGAGAGCAAGGGAACTAAAGAATTGCATCATCAATAAACTGAAC--TTGAGGTTTTGTCAAATATTTTTTATGAACTCTGCATCTGCTTGCTAATTTTAAAGTTAGAAAGGAGACATAGG-CAGGTTGATGGAAATCAGAAATGTACTTCCAGAATGTTTGTGAGTTATTCAATGT--GCAGCCCATCTTCACTCTCACCACAGTCACTTAACCATGTGGGGATTTTTTTACATAGGATTCTGCTTCTTTACCTCC----AGGTACAG-----------GATAATATGAACTGGGTATGAAAGAGTTGTAATCAAATATAGCTTTCAGAGTATTGGGGAGATATATAAGCATAATATATAAATACGTTTTTATTATCATAATT-------TAAATATGT-----CATAGCAGAGTT---ATTGCCAGAGCATGACAACATTGTTGT-------CATTCCT--TGATATTTTTgagc-----tcaca----------------------------gtaac---------------------agagactggctag------ttcatgtgtttctggtatcagcctgtctgcagttacacagtactatggttacaagtatgggtcaccatgcctagccttCAGAAGAATTTATTTTT--AAAGAAAGTAAAATGTGTGGCTTGGATGAGAGGCTCTTAGGATGGAACAGGCCCACTTTTTGTTTAAATTCGTCTAAGGCTT------CCCTTCCAATTCAGGTCATCTATGGCCGTTCTATGAACACTCTCTTCTTTGTTCTAGC------CTTTTAGTTGTTAGCTTTTATATTCTCCAAAGAATGAC-TATAATGAGTTTTTCCTCTTCGTA--TCAAAACTATCAAGTAAACACTGTGCCAAATTGTCTGGAGAACTTT-TGGGATTTAA----TAGTAGATCTGTGGAGAGGAAAGAAAACTAGGCAAGTA------------TGTACTTACAGGGCATTGGAAT--TGTCTTGCAGAAATGCAGTTTAT---TTGAGGTTCCAGAAATAAGGACCAAACATTAGCTGGGTGACAGTCCTCACCAGTAGGTT-CAATGATCCTTGTGAGGGTTCATCATAGCAGCTTCAGGAAGGAGCTAAATATTATCTGTTCCCACTTTCCCTGTTGTTACATTTGCCTGTACTCTTTTAAGAGCTGTAGGAAGTTATTTATCTGTCTTTGAAAGGT----------CTCTGTGAAACTTCAATATATAAAAGGAAAGGATATTGGCTTTTATGACCTC-ATTTCTCTGAGAGATT-------AGGACAACACATGTAGGAAATTTTAATTAATGGTGTACCAAA-AATAAAATGTAAGTGCCTAGTGAGTAGTA
s HiC_scaffold_1 136638442 3665 + 233722169 aatgatctatATTTGTCTCTTGTTGTCTGTGTAATGTtggttttatttcagttttatactCGTTTTTCTTCAAAAAGTCATTTGCATATTTCTCTAATGCTAAATGTCAatgtaataatatattttattaccaaGTTTATTCGTTTACTAtccactttatttctttttacctaAGAGTAT--AAAAATTGATACAATTTAAGTAAAA--CAATGTATGTGttatgaaaatgaaagataaaaattcttATTTGGCTCTCTCTTACAATCAGATATCCTGTTGTAAACTCCTACAATATGAAGATCTTGAAA----------TGAAACTCCATTACTTTAGGTCATTTAAGTtagatttttgtatatt--ttgtccAAAAGTGTATAACTCCTGAGATTCTAAATGCTATAAAGATACATTGAGTCTTTCAGGCTAAGACTTTACTATCCTTTTTATGAAACTAGCTACTTGCTGTGAAAGATTCTAGtagtaaaatttttcttaaatcattAATAACACCTACATTTTTATAAGTGTAAGATTAatgtttgtctttaaaatttctagTACTCAGTTGATCCTAGAAATAATTCAAGTTGTTTCAAACTGAattatatttccaaaataatcattaaaacaTTTCATGTAAGCTATGCTTTTGAATTCTCCATATATTGATCCTATAAATATGACTGGAAAATATTTGGGGTTATTAATTT--GTTTCACTCTTCTGCCTATATTATTGCCTTTGCCCTCCAGTCT-----AGTATGAGACTTCATTAGTCCTGTGCTTCATTGCCTCTGAGGAGGTATGTGGT--GAATTTAAATGCAGTATAG--CCTACAAAGTGTcttggaatttgtttttttgCAAACAATcttaatatattgaaaaatataagaCATAAGATAAAAAGAGGTatttgagaaaataagaaaaatattccc----TAAGCTAACAGACACTCCTTTAGCTGTCAAGAGGGAAGTGTTACAAGTTCTCCGAAATGATACGGACTCAGATCCT---------TTTTTATGACCACAGCTGGGAGAAAAGTGTCCCCAGCACA----TTAAGATC---TTAGGGTATAGTAAAAA---ATGCATGAATGATTCTGCCCATGTAT------------------------------AATCACTGGA--------TTCCAAAGAAC---------------------ATAACTTTAAATC--------AACCAATCC--CCCAGACTTGAACAGGAAGCACTTTTAAGTAAATGAAGTACCTTC----ACATACAA-------AACTGTAGACTTACC-------TGGACCAGAAAACAG------CCTCCCTCAACCCTATTGCTCTATCATTGTGTTAGATTCAGGAGTCC-------TGAATATGTTACAGA---------GCTGAGGATTAGACAGAAATCC---AAACAATA---ACTAACTTAAATGAGTTTCCATTTAATTGGATGCAAAGTGGGCACTGGAAGTCAAGTTCCTTCAGGATA------TAAAGGAAATGCATTCTCCATGTAGTCTAAAGATTTCAAGTGATTTCTTAGATTCTACAGTCTTTTCTTGATTTCAAAGCTTCAACAGTTCAGTCTCCTGATTTTCTTTCC---TCTCGTGAGACTGAATGCTTCAGAGAAATGACCTTCTAATGTGGTAAATTGAGATCTAACTACTAATTACTAATTGTTATTGCAATTTTTGACCTGATCTCTTGAGCTGGAAATCAAATCCTTGTCTCTGGAGTGTAACCAGATCTAATAGGCAGCCTTTGAGTTGACGCAGAGAGCACATATAAGCAATTGAGTGAGTTTTAAAGTGTTACCTTAATGAACAGCGCTGAATATAATGTGTTTTGAAGCTCAACCTAGGTGAATGTACTTTCCTTTTCAATGGGAGTAGTTAAGTACAAAATTTTTCTACTCCTTTATTTAGAGTGAAGAAGCATATTAGTGAAAAAAAGTGTAAGAAAGTT---TCCCATTGGTATATTTTTAATAGCTTCAAGCTGTGAACAGTTACATTGTCCCTAGGTATGGGGTGGCACATGTTGCGGTTAACTGATTAGTACAGAGCCTCTTGAC---GTACAGACATTTTTCTGTTACTGGTATCAGCCATGAAAATGTATTTCCAAGCAATTAAGCCTTAACTCCTGCTGGTTTGGAAGCCAGGAACCTTCAAATTCCCATTCAAATTATTCAACACCTAccactgatagaaaaaaaaaacaaaacaaaacatacgaCTTCATTAGTAAAAGCCACAAAGAAATCTATTGataagtttttaaagtttctgtaGCATGGGACAAATTCAAAAGTGTTCAGATTGTAAATTACCCACACAACTCTAAAATGacctcactttcttttttcataacCCTAAGGATTTAGTTTATGAGGTCTTAGGTTTAACAACATACTTAAAGAAGAAtgtgaacagaaaaataaatataagaaagg-tTATGGGGAGGGGTGTGAGGATAGCAAAGG-----AAGAATG--ATCATCAGATATCTGTACAGTTTCAATTTGTTTCAGTTGTTTAAATGAGCTAAATATCCACCTGACAA-TTCAAAATTAGAATTGCAGCATTGGACAAGTGGATACA----------GTAATTGCCAACTGAT--TGAACTATTTCTTTTTGTCAGC---TCTTTTCTCTCA--GAAGTGAA--AGCCCTGTAGAGACAGggatatata--attttcttttattacttctaAAAAAGGACAGACAAAGAGTGTGATGTTAGATAGAAGGTATGGGAAAGTTTTTCatcaacaaattttttaaaatttttatcagataAATACCTTTTAT-TCTGAAGGCTGTGTTATTTTCAAGATCTCACAAATCAACTTGTTTTAATATCGCAGAATCAAAATTACCTATGCA--GTAGCATTGTACTTTCAAAACATTTATGATAATGTTTATGATCCGGCATCACAACATATCAGTAAGTGGGAACTGGAATATGTAACTTTATCAAAGTATGAAGAGTGAAAGGCTGCTTAGtgatttttcatattctgttcctAT-------TGTGCTGGTTCACAGTAGTG----TACAAGTTTTATT--CTATACATAAACTCTAAAAGTtcctgcttttaaaaagaaagcaaa-----tacatCAAAATGGAACCTCTAAATAGGCAGGTGACCTACTTTGCTTATAAATGCTACAGTAACTTGGTAAGTCTCTGCAGT--AAACTACCAGTTG--ATTCTGTtga-actttcat-tttgttttaacttcATACTTTCAGTTATTAGGTTTT-TGTTCTCAAAAGAGTGTCATGTAATCATGATTTTATCTAGGCAGGTGGAAATCATTA--CAAATACAATACTAAATTATCTTGAGAACTTTCTAGGATCCAACGGGTAGAATTTCTATGACAAGAAAGCACAATGATCCACGTAAAAGATCTCTAGCAAACCTACA--GCACTGGAATCATGTCTATTTGAAGTGCAGTTTCTCAACTGACCACCAGGAATTCTATGTAGGACGTTATCATGGTGACTGTCCTCATTAGCGAATCACTATGACAATTGC----CTCCAAAAGAACAGA-CAAGGAGAGTGAAGTTTGTCATCTGTTGTCAttctttctattgttattttcttctgtgctattctaa----------aaatgttttaattattttcaaaacctTCCCAATTTCCTCTgtcaaatataaatatacaaaagggGATTATTTCTG-TCTGACAACTTTGAGTAccttaagagatttttaaaaagaaaaagaaaagaccagaaTTTTAACAAACATcccacaaaagaataaaatgtgtgtGTTAAGTGAGTGGTA

a score=17447
s chr3           150062924 2663 + 160039680 TAATGTAAAGAATACAGACAACAAGATGAGGATTTACAATAATTACTCCTTTTCTGGTTCCATTTAAACATTTCACTAGCAAGAGTTAACTTGGGATTTCAATTTTAGACATGAAAAACCCTTTTCTAAAATTCATTTTTCCTTACTCCCAAT-TTTACAAATGACTATGAGAAGTTTGTAATCTTTTTGTAATTTCTCTAAAGAATTTTAGGTATTCTTGTAAAATTGCCAAGT-CTGTAGATTTTTATAATATGTCAAACCAATGATAAACAAGCATTATCCCAAACCATTTCCTGATTCCCATGGGACTCACAATGTTTTCTGTCCCA-ATCCATATATGCATTGTATTTTCCTGTGAATATTTCATATCTTTTCTTTTCTAAAATGGGCCATATAAGTTTGTAAATTTCTCTGATTTTTTTTGTTTGTTTGTTAGTGAAGAATAGGTAAAGGGATTAGTCGATGTGTTATCATGAA------------------TATCTTA----ACAGTGACCAATTTCTTTTCAATATTAAA---------TTGAAATTTCTAGT---------CTCACTGTA-------ACAGCACTC------------CATGTCCAC------TATTGTAATTT-------------TTCTTCTCAAGACCATG-------------------------------------------CCTATAagagagagagagagagagagagagagagaga------gagagagagagagag---------------------------------------------------agagaaagaaag---------agagagagagaCTATTACAATTTTATTC--TATTAGAAGAAAGTAGAGCTACAAGAGCCTAAGAGCATCTCCCATCATGTTGTTTGCAATCCTGGACACAAAAATGATGTCTGCAATTTT-ACTCCAAAAATATACTCTAGAAAAATGAACAAATAATTTCCTCTGCAAAAGAAAAATATCAGGGGGGTGG---GGGAATATGGCATTTTACTATCTCTATGGCTATTACTAGATGCTAGAAGATTCAACCAGTGTTTCTGAAAATAAATGAGATTTGTTAATTTCTATTGCTACTCTAATCTTT-----------------TAAAATATATAAATGGTTTATAATAGTAATATATAC-----------AGTAACTACAAATTAGAT--------GGTTGTAATTT--------------ACGTATAGAACA-----------------TGCACATTGCCCT----TTACTTACAA-------ATCTTTATGTTTCAATC------------------------TCTCTTATCtatataaaaattacataattaattatgtttt-----tgattaaaaaattatCATAAGCAACGTATTAAGC--TTAATATCA--------------TTCTATATGGGTACAAAGCATATCTCAGTGACTGATGGACGGTTTAGAGTCAATGCTCTGAGATACAGCCATTTGGAAGATATAGCCTGACTAAGGAGATGTCAGCAGAGCATTCCTGACTGTGGACTTACTCGAGCTTGCCTTGCCCTATTGCACAGCAGTAGCATGGGAATGACACTAGACTTCCCTTAAGGGCAAGCCGCAGAGGTCTGGGTGCCTGTGTTTCC---------------------------CATGTT---------------------------------------------------------CCCAAGGCTAAAAGCCCAAAACCTCCACAACTGGTGAGTGTGGAAACTGTAGGCCCTTATCATAGAACCACGCTGATAGTAACTATGGGGCGTCATTTCTGATTAAATTTTATTTCTTCATTTATGAAACATTGGATATTGTTTCTTCAGCCTGTTCTGGTTCCTCTTCCTCACCTCTGACAA-TAGCTACGCTTTATCTAATCAG--TCACTGAAGGAAT-CTATACTTTGGCTTTTGTTTATGTGTTA-AACTCCCCTCCCCCCACACACAAAATTCTTGGTCAATTTCTCAGTTTAGTGCTTTAAAATTTTTCACGTTTTATAATTACCCATGAATTGTCAAAG-GAAAGGTTTCTGCTCACTTATATTTATTTTGAAGATTTTGCATTTACTCTTTATTAGTTATATTTATGTTAAAAAGGGATTCAGTTCATTTGCAATTCATTTTTAAAAAGAAAAACATTGCGGCATCTAtttttttttttcctgagacagggtctctgagatgtaacccagactgtcctgaaattcactctatagacaaggctgactttgaactcagagagac-----acctgcctctgcatctcaaatgatgggattatagacgtgtgccaacactgcccagctTAAAAGAAAAACaataataatttgaatataaataatatt--taGGAAAATTCATTTTCTTAAAAGTATAAGCAAGTGTTCATGACTATGTTTGTGATATTGCTGGAATTGTTCAACTATGAAGTGGGTTGTTA-GACATGCTTCCCTCAG-ATCACTTCCCAATGTGGTGA----TAATATCTAGTAATCCA-GTAGAATCATATCTTGAGCATATTTTATATGCTATTCTAAATTATTTTCTGAAACACATGTTTGTGGACCTCATT----TGGAATATCAGGAATTC-----AGTACTGGTCCCAGTGACTCTAAGATTTAGCAAAGCATGAGATATA---------------------ACATATAATAAAAGTTAGATGGGAA-AACAACACCGGAACTTACCAATTGTGGAAGAATCAGAATGCGGTCCTTTGAACAAGCTGCTCTCTGACCATGTGCTTTTACTGGGGTGTGGATCACCAC-ACAAAACAAACAGCGAACAAACAATATCTTATTCTCTGCAAT----GGCTTTGCTTCCTCTATGTGTCAAGACAGTTGTAAACAAAGAAA----------------TTAGCTCACCTTATTTTCCTCATG---TTAATATATTCTTCTTAAAAGGTATTCTATTTTAATTTTCACTGATTTTAAA-----TGTATCTGTAAATGT---CAGGTCTACTAGGTGATCTCACTATT-TTTATGCTGTAGTA
s HiC_scaffold_1 136645638 2934 + 233722169 taaaattaaagataaggAAAGCAGGACAAGCAATTGCCAAATTCATTCCTACAATGATTCCATTTAAACATTTCATTAACAAGAGTCAACTTTGGTACTTAATGTGGAGCATAAAGTATCTTGTCATAAAATTGATTATTTCTTGCTCCTTACATTGACATATGGTGCTGAGAAGTTTCTGAGTTTCCTGGAATTTGTATTAAGAATTTTCAGTATTccagtaaaatttcaaaatactaaagCTTTTGATAATAAAGCAGGCTTGAGTAAGACAACC---AGcctaaacattttcaaattttccatttaattcaTAAGGCTTTCTTTTCAAGGGTCATATATGCGGTTGTTGTTactg----tatttta---atttccttttctaaaatgGGATGCATACATCTCAAA-----TAGGGT----------------TTAGTGACAAATAGCGACTAAAATAAAACATCCCAGTACTATGAAAGTACTAGAAACATTTTCCATCTTAAACcacctttattaattttttcttgaggttaaaaaattattttttaacttttttattagcacatgtttgctgTACATGATGACTGCAATTGTAGGAAGTTGGTATATAGACATCATgtattgtaattctcttttttttctgttttttttaatcccCTACCCTTCTCCTACTTCTATGCTTCTTTCAATCCCTGcttcccttcctatttgcaaaagctctgtggggatggaaaagaaaactatttgaaGTTGCTAAAAAGTTATTGTCTCACTTCAAACCACCACATGCACTCTATCTTGAATTTTTTCTCAGAGAAGAACTATCAGATTTTAAAGTGGGAAGCATTTATGTTTTACGTCAACAATGGGAGAAACAGaggttaaaagaaattaa----atcatacaGTATGTCA--TGCAAGACTGTGAATAAAACTAATACCTTAAGTTTTCATACCAAAATTATATgctagaaaaataaggaaatttctTTGTCT-CAAATATAAAGTA----GGAAATGATACGAGAGTACAATATTG---------------TATTTCTAGGAGTCATGTGAATTAACTAGTGTTTCTGAAAA-ATACATGGTTTCTTCATTACTATTAACACATTATTATTTAATAACATACAGAACCATAGAGTATTTAAATGTGTAATAAATGCGAGATAGACTATGAGAGAAAAGCACatacaaaatgaatttaatatcGTTAGTAATTTATCTTCATATCTCAACCTATAAAGCATCATTTCATAAGGTGATTTCATGGTATCCTCCAGTTCCTTTCAAACATATCATTCTAATCcttcactcaaaaaaaaaaaaaaaaaagctaagccTCAGAACTA---AAGGACTTTAAAATTAAATCTGTACTACAGGTATGCAGGAAGGTAT-ATACACTGATTATCAGGCAGTTAAAATCAGGCCTGGCTTAAATTTCTATTTCCGTGCAAAATATGCC------ATAAATGCACAATTTAGTTTTAATGCTATATGTGATCATATTTCTGTAG-----GTCTTATTAAGTGTAGCTTCACAAAACACTTTTGGTTGTTTCCTTACTAGAAGTTG-CTTGCCTT-TTGCACATGAAAGGTATATGAATGATAACAtagttcttttaaaacttttcttcagAAGTTCCTTTGCTTCTATTCCCTGCTAGTGTTGGGGATCCTGTGACATGCATGCTAGAGCAGGTTATTTGTATCATTAgtagctctaaaaggttcgccatcatcATATAGCATCCATGACTAACTGCCCAAAATCCTCCTCCTGGATAAGAATATAGACCGTATTAGCTCACTGCAGAAATTCTCCAGCAACAAACATACACAACTCTTTTCAATTTGattctgcttcttcatttatgCAAAATTCAATATTGTTTCTTCCAAATATCCTGGTTTCATTTCCTTCTCCTTGAAAAGCAGTTATAGTTTATTTGATCAGCATCACTAGAGCATTGTTATTTTTCTACCTTGGTTATTTTGTTATGAGACTCTGCTTTTGGCATAATAAATAATTGTGTTACTTATGAGCTTAGCATTTgcaattttatcaaatatt--------ccATTAACTATAAAAGTGAAATGTGATAGACTACATAACTTtagt---aaaatttt------------------ttatattcttcataggAAGGAA-------------------------------------------GCTTACATTTCTTGCATTTTTATGCCATGATT----AGATAAAAT---GATTGT--TGAGATTCTATCT-----------TGACTTACaatt-------actgtttatttgtttaaaaaattcaaataat----ttgtaCACATGT------attccatattttgaaaatttcataa-aacaaagtgaaatttaattttattcccAGGAAGTTTAA--TTCTTAATTACATAAACACATGTCAGTAAACTTATTTACGATGCTGTGGAGCTTGTTCAAATGTGAGACAGGCAGTTGCAATGAATTACTTTTAGTGTCACTTACAGCCTTGGTAGCTCCTAATACTCAATGCTCTGTGCAGAGCAGTAATCCAGGCATCTTTTGTATGTTCTCCTAGATTGTTATATAAAAT-----TTCCCAAACCGGAGCTTGGTGGAATATCTGAGCATTGGCCAAGTATTTTTCCccacaaaatcaaaatttaacaaaaccACAGTTATATAAACACACAATTATACAAACACACAgaataaatactaaataaaaagaatagtacAGGCA-TAAACAATTCTGGAGTACCCTAGCTAGGGCCATTTACACTATATGTTTTTTGATCATTCACTTTTAATAGATTTTATATCTCCACTGCAAACTAAGC----------CAAAGCCACATTCTTTCCAGTCCAAGGCT----CCCTTCTGGGCAT-------GCTGCAGACAAAGAAACTTTCAACAAAATGATCTAACTTAGTTTCTTTTCCTAGTACTTTTGACATCTTTTGTTTtaa--gctttctgtttttatttgcattgcttTCAAATAGggtgtaaatataaatatttccatcTTTATTTAATATACTCACTTTTCTTTATACCATAGTA

a score=41342
s chr3           150072548 1070 + 160039680 TTATGATATTATAGCTATCATTTC----TTTTTTTTTTTTTTTTTCAGCTTTTAGCAACTTTATTTTCCTTCCATCTTTTTTCC-CTTTGCTCAGGCACCTGCACAGCAGCTCAGGACCACTCAGTGGTGGCTCCAACCCATTCAGTGGCCTGCGCTGTGGGAGCTGCTGACCAATCCTCAGTGGCTGGCTGTGCACTCCAGTCTTCCGTGGGGAACTGCTGGATGGGCACAGAGGGAACCTGCACACCCTCAGACCAGTCGGCCACCTCAGGCTGAGCAGCAGTGAACTCAGGAGCTGGTGCAGTCCATTCACCCTGGAATTCCTCCTTGGTCACAGCCTTCTCAGCAGCAGCCTGCTCCTCCTTCTCAATCTCCTCTGGGTCTCTGTAGAAGTAAAGATCAGGCATGACCTCCCAGGGGTGCTCACGGGAGATAGTACCTCGCATGCGGAGTACTTCCCTGGCCAGCATCCACCACATCAGACCCACTGAGTGAGCTCCCTTGTTGTTGCATGGGATGGCAATGTCCACAT----AGCGCAGGGGAGAATCTGTGTTACACAGAGCAATGGTGGGCAGGTTGACATAAGAGGCCTCTGTGAGTGGCTGATGGTCAGCCCTGGGATCGGTCACCACTAGAAGCCGTGGCTCCCTGAACGCTGCTTGGATCTGGTTAGTGAAGGTCCCAGGTGTGAAGCGGCCAGCGATCGGAGTGGCTCCTGTGGCAGCAGCAAACTTCAGCACAGCTCGCTGGCCAGTGTTCCTGGAGGAGATGACGCTGACATCAGCAGGGTTCTCGATGGCAACAATAGCTCGAGCTGCGAGCAACAGCTTCTCCCAGGTCCTCTTCAGGTTTATGATGTAGATACCGTCACTTTTCCTTTTGTAGATGTACTGCTCCATCTGAAAGTCAAGGTTGGTGCCACCTAAGTGGGTTCCCGCAGCAAGGAATTTGAGGACATCCTCCTCCTTCATCTTCAGGACGTCAAGGGCTCCGGACATTGTGTAAGTTTCCCTTTAAGTTACGATGGGAATCAAGAACAACGCCGTATGGACCCGTCCCCGGGTAGCGCGGAAA
s HiC_scaffold_1  90662036  995 + 233722169 TTGTGATTTCTAGATTattgttttatcatcttttttttttttttttagaaattaatg-CTTTATTTTCCATCACTCTTATTGCTGCTTTGTTGAAGAGTCTGCAGAACACCTCAAGACCTCTCGGCAGTGGTTCCTCTCCACTCAGTTACCTGTAGTGCAGC--CTGCAAGCCAGTCTTCTGTGGCCACCTGAGCACTTCGATCT-CAGTAGAGACCCACTGGATGGGCACAGAGGGCAC-TGCATGCCCTCAGACCAGTCTGCAGCCTCAGACAGAGCAGCAGCAAACTCGGGA-TTGGTGCTGTCCATTCTCCCTGAAATTCCTCCTTGGTCACCATCTTTTCAGCAGCAGCTCATTCTT---TTTCAATCTCTTCAGGATACCTGTGGAGGCAGAGATCAGGCGTGACTTCCCACAGGTGTTTGCGTGAGATGTTGCCACTCATGCACAGCACTCCCATGA-GGGCATCCAGCACACCAAACTCACTG-GTGAGCTCCTTTATTGTTGCACGGGATGGCGGTGTCCACTTCACCAACATGAAGGATAATCTGTGTTAACCTGAGCAGTGGTCGGCAGGTTGACGTAAGA------TATGAGGGACTGTGGGTC-TCCCTGGGATCAGTAATGACCAAATGACAG------CAGAGGGCTGCCTGGATCTGGTTAGCGAATGT----------------TCAGCTATAGGAGTAGATCCAGTG---------AACTTTGGCACAGGCCCCT-GCTGGGGCTCCTAGGGGAAATGACTCCTAGGTCAGCAGGATTTTCTGTGGCCACTGTGGCTCAGGCTGCCAGCAGAAGCTGCTCTCACTGCTACTTCTCATTTATGGTGTAGATCGAATTACTTGGCCTTTTG----------GCTCCATCTGGAAATCCAGATTGGTGCGGCCTAAATGGGTTCCTGCAGCAAGGAGTTTG-----------------------CAGGCTACCAAGAGCTCCAAGCACTGAGGAAATTT-CTTTTAAGTTATGATAGTAGCCAAAAACAGTGCCATGTGGACCCCTCCTTGAGCAGCACCAAAA

a score=42242
s chr3           150072562 1057 + 160039680 CTATCATTTCTTTTTTTTTTTTTTTTTCAGCTTTTAGCAACT------TTATTTTCCTTCCATCTTTTTTCC-CTTTGCTCAGGCACCTGCACAGCAGCTCAGGACCACTCAGTGGTGGC---TCCAACCCATTCAGTGGCCTGCGCTGTGGGAGCTGCTGACCAATCCTCAGTGGCTGGCTGTGCACTCCAGTCTTCCGTGGGGAACTGCTGGATGGGCACAGAGGGAACCTGCACACCCTCAGACCAGTCGGCCACCTCAGGCTGAGCAGCAGTGAACTCA--------GGAGCTGGTGCAGTCCATTCACCCTGGAATTCCTCCTTGGTCACAGCCTTCTCAGCAGCAGCCTGCTCCTCCTTCTCAATCTCCTCTGGGTCTCTGTAGAAGTAAAGATCAGGCATGACCTCCCAGGGGTGCTCACGGGAGATAGTACCTCGCATGCGGAGTACTTCCCTGGCCAGCATCCACCACATCAGACCCACTGAGTGAGCTCCCTTGTTGTTGCATGGGATGGCAATGTCCACATAGCGCAGGGGAGAATCTGTGTTACACAGAGCAATGGTGGGCAGGTTGACATAAGAGGCCTCTGTGAGTGGCTGATGGTCAGCCCTGGGATCGGTCACCACTAGAAGCCGTGGCTCCCTGAACGCTGCTTGGATCTGGTTAGTGAAGGTCCCAGGTGTGAAGCGGCCAGCGATCGGAGTGGCTCCTGTGGCAGCAGCAAACTTCAGCACAGCTCGCTGGCCAGTGTTCCTGGAGGAGATGACGCTGACATCAGCAGGGTTCTCGATGGCAACAATAGCTCGAGCTGCGAGCAACAGCTTCTCCCAGGTCCTCTTCAGGTTTATGATGTAGATACCGTCACTTTTCCTTTTGTAGATGTACTGCTCCATCTGAAAGTCAAGGTTGGTGCCACCTAAGTGGGTTCCCGCAGCAAGGAATTTGAGGACATCCTCCTCCTTCATCTTCAGGACGTCAAGGGCTCCGGACATTGTGTAAGTTTCCCTTTAAGTTACGATGGGAATCAAGAACAACGCC----GTATGGACCCGTCCCCGGGTAGCGCGGAAAG
s HiC_scaffold_1 207928410  828 + 233722169 ctattattattattattatttattttt--atttttagaaactggtattttattttttatcaaccTCATTCCCACTTTGCTGAAGTGTTTCCAGAACAGCTTAGGGCCATTCGGTGGTGGTGGTTCCTACACACTCAGTGGCCTGCGCGGTGGG-GATGCAGACCAGTCTTCTGTGGCCGGCTGAGCACTCCAGTCTTTGGTAGTGAACTGCTGGATGGGCACAGAGGGCACCTGCATGCCTTCAG------------------GCTGAGCAGCATTGAATAGAATTTTAATGGGGCTGGTGCAGTCCATTTGCCCTTAAATTCTTCCTTGATCACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAATTGTAGGCAGGTTGACGTAAGATGCATCAGTGAAGAGCTGGTGGTCTGCCCTGGGATCAGTAACCACCAGAAGACGTGGCTCTCGGAAAGCTGCTTGGAACTGGTTAGTGAAGGTCCCAGGAGTGAAGTGGCCAACAATAGGAGTCGCTACAGTGGCAGCGGCAAACTTCAGCACAGCCCGCTGGCCGGTGTTCCTAGAGGATATGGCGCTGATGTGGGCAGGATTTTCAATGGCCACTATGGCTGGAGCTGCCAGCAGAAGCTTCTCCCAGGTTTGCTTCAGATTTATGATGTAGAATCCATCACTTTTCCTTTTGTAGATATACTGCTCCATCTGGAAATCCAGATTGGTGCCACCTAAGTGGGTTCCTGCAGCAAGGAATCTGAGGACGTCCTCCTCCTTCATTTGCAGGACATCAAGGGCTCCGGACATTGTGAATG-------TTAAGTTACAATGAAAACCAAGAACAACGCCGTATGTATGGACCCCTGCCTGGGCAGCACGGGAAG

a score=5968
s chr3           150072605 221 + 160039680 TATTTTCCTTCCATCTTTT----TTCCCTTTGCTCAGGCACCTGCA--CAG----CAGCTCAGGACCACTCAGTGGTGGCTCCAACCCATTCAGTGGCCT-GCGCTGTGGGAGCTGCTGACCAATCCTCAGTGGCTGGCTGTGCACTCCAGTCTTCCGTGGGGAACTGCTGGATGGGCACAGAGGGAACCTGCACACCCTCAGACCAGTCGGCCACCTCAGGCTGAGCAGCA
s HiC_scaffold_1 136139143 230 + 233722169 tgttttttccccattctgtagattgtctcttacTTTAGCACATGCAGACAGTGCTCAGCATAAGACCACTCAATGGGGTTTCCTGCCCACtcagtggctgagcagagagagAGCTAC-ATTCAGGCTTTCGTGATTGG-TCTGCACTCCTGTCTTCCGTGGGGACCTGCTAAATGGGCATTATAGGCGCCTGACCACGTTTAGGCCACTTTGAGACTGCAAAGTAAACAACA

a score=52940
s chr3           150087671 1229 + 160039680 taaataaataaataaataaataaatac-----------------------ccatatagatagacacata-aatacataaGGGGTAAGAGTTGCTACCAGAGATAG----------CATATTTCATG-------------------TCCATATTTGTAAATGAGCTGAGTTATATATAAAATATTCTGTATATTTCTACATTTTCATTATATTTAATAAACTGGGGTTCTAACAGGTCCAACCTCAGCAACAAATCATTATGATCGTCTTTTCAGCCTCGGTCTCT-CTGTCTCTGTGgataatactttacaataacaaccccatcatcttca-ctcctttggtatttattgaaaggacattaatgctgacaggctcatttagtattaatgtggatgccacaagaacttcaccagaaacaggatttctcccggaattcatctttaattagccaggtcattccttcaaaA-------CTCTATTCTTACAACAGCCACACTTCAAGACATGGCCTCCTGCAAAGCCCATCAAG-TTCATTCTGTCAGAAGGACCACTTCGAAAGGCTTGAGACTATTGAGAGAAAGTTATGGGGGTGAGCAGCATACAATAGACAAGGTGTGGTAATTACCGGACAACTTATTAATAGAAAGCTGAGGTTTTAATTGAACTTCGGTGGTCCCTACAATAGCTTGAATTGAATAAGGAACATGATTGCACTTTAAATTTCTGTGGAGTATAAAAAAGCAATAGCATTAAATAAAAGGCTCAAATAAGTCCTTCAG-CTTTCACAGAAAGCGTTAAAAAGTAAAAGCCACCA-CAATTTAAAACTGTCGTAATTGGTGCCTTAATTGGGTACTATCTTGG-CTAGAAACACTTGCCTCTTCTAAAGTGAATGCA-TTTTTAATGATAAAAATGTGTTTTTTTATTTTGTAGTGTTTATCTGAA-AAATATACATTTTCTAACTAACTATGATTTTATTA--CATTATTTT--CTT--TTTCAGAAT-TGAAGGCAGCTATTTTTTCCGTATAACAGACTGTCAAGGTCAGCCCATTGTTCGCTAGAATAACAAGAAAGTTGAAGTGTCTTAACTAGATTACTGT--TCTCTGCAGTATCATGCATCTTCCCCCAAACCATTGACTGTTGAAATGGAAAAAGTATTTTAGATTAATGTAAATGGGAGGGAGGCTGTTGAATTCACTCTT--CCCTGGTGACCTCTTGCTAACAAATTCTCTTTGCATTTTGACATTACAGAAACTGCTTTTGCTTTGTAACTTAAAGATAGTTTAaaagtaag
s HiC_scaffold_1 136665272 1285 + 233722169 TAGATAGATATATAAACATACAGATATAGGTATCACATACTTATAACATGTCATATTTATATGCACATATGAGATGAAAGGCATAAGA-TTGATATCAAAGGCAGGTATTGTTAACAT-TTCCATGGAATTCAGACCAActcttttttacatttataaataggCTAAATTGTGAATAAAATATTCTGTGTATTCCCAtgtctttattatatttattaaatatggaTTCCACTAGCtcaaatcttagaaacaaatcactatgattttcttttaagcCTCAGTCTTTTCTGACTTTCTGTGTAACAATTTACAATAATAGCCTAATAATTCTCAACGCCTTTGGTATTTATTGTCAGGACATTAATTCTGATGGGCTCATTTAGTATTAATGTGTATGTCATAAGTACTTCAGTAGGAATAGGATTTCTACTGGAATTCAGCATTAATTAGTCAGGTCATTACTTCAAAGTGTTGCTCTTTCCTTTTAGAACAGCTGCACTTCTACGTACTCCTTCCTGCACAGAGCATCAAGGCTCTTTCTAT-AGAAGGGGCACTTCTAAGCACTTGAGTCCATTGAGAGAAAGTTGTAGAAGTGAGAAGGATACAATAGACAAGGTGTGGTAATTACCAGACAACTGATTAATAGAAAGCTGATGTTTTAATTGGGCTTCTGTGGTCTCCACAATAGCTTGAATTGAATAAGGGGCTTGATTGCACTTTAAGTTTCTCTGGAGCATAAAAAAGCAATAGCATTAAATAAAAGGCTTAAATAAGTCCTTCAATTTTTCAGggaaagtgtaaaaaaaaaaaaaaccctattcaTTAAAAACCATACCAGTTGGTTCCTTAATTAGGGGCTATCTTGGACTAGAAATACTTGTATATTCATAACTGAAGGTATTTTTTAacgtttaaaatgtattttttaaattcacattgcttgtctgaagaaatataaattttgta------tGCTATTTGATTGCCCATTATTCTGACTTGGTTTCAGTATCCGTGCAcagtta-tttttatgtgtatcAATGTGTCAAGGTCAGCTTATTACGCTTTGAAATAATCAGGAAGTTTAAGTGTCTTAATTATATTACTGTGATCTCTACAACATCATGTATCTTTATAAAAATGATTGAC--TtgataaaacaaaattactttaGGTTCATATTAATATGTGGG-------TGAATTCATTCTTTCCCCCAAAGACCTCTTTGTGACTAATTTTCTAAGCATTATGGCATTGCAGAAAGTG----TCCTTTGTATCctgaattttattcaaaactggg

a score=21729
s chr3           150097824 819 + 160039680 ATCAATATCACACATGTTATAATTAAAATAGGAATGGTTAACCTAACTAGTGACAAG---CAAGGGCTTCTGTATTTGGATGTTTTAAAGGTCAGAGTA---CTGGAG----TACTTACACTTT---GGGATAAATGATGGCACTCTGGGAGATTAATAGCCACTGTCGACTTCTGTAACCAAGGCCATGCAAAAATGTCTCCCAGAAAGCAATTCCTGGTCTCCACAGAGAAGCATATGCTAGATGCTTGGGGAGTACCTATCAGCCCATCTG--TCTGGGAACTGGCAACTTTTGAAGTCTTGGCTTGCTCCAGAGAGCCTACAGTTAAGCTTCTTGATATTTTCCTAAGAATG-TTGTAGAGCTGTTGATCTAAAATCCATTTATCAAAACAGCTCCCCGAAGAACTATCTTTCCATATACCTAATTGCTATATCTTTTTTTTAATTATGGGAAACAACAGAGACCAATGAAATCTGCATATGGGTCCCCACCATCCAGAGCTAGCAAA-------------------TTCATGAAAAGAAATGTTGGATAAAAGTATCTCAAAAGAATTAATGGTGCTTAAACTTACCTTACCATCTCTACTAACCATAGACCATGATACTATAGATATAACACTTTTACAAATTATCAGTGTGAATTTTGTATCTTTACAAAAGATACAAGATTGTATCTTTTGTCCACTATATCTTCTTTTATCCAGGAATAATATGT---AATTTTACATAGAATTTAAATCATTTCTGTCAGTGATATTCTACATAGTTTTCTTGGAAAATATCTATGATTGAGTTTAC-----AGTCTAATGGAG-TCTGTGAAATAAGTGGAAGATCTACAAG
s HiC_scaffold_1 136675454 829 + 233722169 ACTAAAATCGCACAGTTCACAAATAAAATATGGACAGTTAAACCATACAGATAGCAGTGTCAAAGGTCAGTGTAATTGAACTTATAAAAGTTTAGAAGAATCCTGGAGCTGTTGCCCACATTCTCATGGGACAAATGACGGTGCTGAAGGAGATTAATAACCATTGTCTACTTCAGTAATGAAGGCCATGCAAAA-CAACGACCCGAAAGCAATTTCTGATCTCCACAGAGAAGCATATGCTAAATGTTCAGGTAGTACCTATCTGGCCATCTGTCTCTGCAAAATAGCTTCTATAGGAGCCTTGGCTGGCTCTAGAAAGCCCACTGGTAAGCTGCTGCATGTTTAACAAAGACTGTTTGTAGGCCTGTTGGCCTGAAATCCATTTATCACAACAACTCCCTGAAGAATtgtcttttcctatatttg------gtataatttttttaattacaggAAATAACAGACAGCAATGTAACAAACACCTGGATATCTATCGTCCAGAATTAACAAATGCTCGTGTTGTATGGTGTTTCTTAACAATAAATGATACATTAAAACATCAGCCAGaagtaaaagcttttaaaaataacctt----tttctcttccccatCAAAAATTCTACTACATTTATAACTCGAAGATGAAC--TCACTGCGTATCCCTTATC-------------------CGTGTTGTTATTTTAGTATATC-TCTGTCACCCAGGAATAACGCATAACAATTCTTCATGAGGTTCTTAAGGGTTTGGGAAATGCTTTTACA-GTAGGTTATCTAGAAAAGATAAGTGTGCAAGTCTTTTTCCAAATCCAGTGAATCTTTGTGTCACACATGGAAGACTCACAAG

a score=14797
s chr3           150109491 698 + 160039680 AAAACTTA-ACTGTAGTAGCATGAGTTGTACTT---------TAAAATCATACAAAGGAACCACATTCAGATACAGCCAGTTTAAGGAAGTGTTCAGGCCTATTGCCGTAGATACATGAGAGTAAAACAAAGAGAAATCCCCCAGTCTAACCTAGTGGTTAACATTCTGCAGGC-AAAGAACTGACGACCTAGCTGAGATTAAGTCTGTGACAGACAAGAGATAAAATGCTAGATTGCCCATGGCGAATTCTGGCATGGGACTTGTTCATGGGAGCCAGGAACATAGCAATCAGGCTCAATAAGC-AGAGTTCACGGGTCAATTAACTCATGCCTAAGGTACGTGCTGAGGCAGAGGGCCTAAGGCTAGCAAGTAGCATG-CTTTAAATGAAATCATTTCATATAACCAGAGAAATGATATGAACAGCAGTATACTTTGGAAGCTGGAAGAAAAAAAAGTAGCAAAAACAAAACAATTAAAATAAAATTGAGTTTATCTCATTGCAAA-CTCTCTAGTGGAATGAATTAAAAAAACACTGAACACATATATTAATTGCTGAGGTATGAATCCGGTTTGTTGCAGAA--ACAAGAAATTCAAGATCTTGTGAAGACTCTTTTGCTCTGAAATATTTATATTAATTGATACTTTTAAAGGGCAGATTTTACTCAGACTTTGTTAAATTCCTTTTAAAATTTTTAAAAGATTTCTtt
s HiC_scaffold_1 136684194 667 + 233722169 AAAACTTAtgatatagtaaaatatattttggttgatttttgataaaaaaatgaataagaatcACAATGCG-------CATTTTAAGAAAGGTTTGCAATCTTGTCCTGTGGAAAgacta-agcaaagcaaa-acaaaacaacaaatctaAATCTCTGGTTAGCAGCCagcaagagaaagaacaga--aCCTAG----GATTAAGTTAGTGATAGACAAGAGATAAAATATTAGATTGCCCATGGCAAATTCTGGGAAGGGACTTGTTCACATgaattaaaaatacagcattaaGGCACACTAGGCTATATTTTATCGGTCAATTAATACTTGCCTAAGGTAAATTCTGAGGCAGGAGCCCTCAGGCTACCAActagcatatttttaaatagaatcctctcaca-------agagacaatatgatttgCCACACAT------AGTctgagccaaaatacaccttAAAAGtggaagatttttaattaaa-----tttatttcattgaaaagttccCAAAtagattgaaataaaatttctttaagtaATTGAATTAACCCATGAGTAGTAAATCAAGTTTGATGAAGAAAGATAGTGTACTGAGAATTCAGTAAGGAATGCTTTGATTCTAGGCATTTGC-TTAAATAACAATCTTACAGAA-ATATCTTA---AGG----GTCTAATTGcattcaa-----ttaaaatattacttt

a score=19475
s chr3           150119195 1847 + 160039680 TTATTTAAGTAATTTGATTTATACATTAACAAGTCCATTAAAGTTATTGGAGTAGACCTATTCTCATTAACAACACTGGAAGTATGAAGATACACAATTTATGACAAGGATTGAGATATGACTAAACTATCAGTGGATTACATA---TTTACTCATTGGATACTTC-GTTATTCAAAGAA----AATAATTGTTAAATTTCCTTCCTGTAGTAATATTTATTTCATAATTA------CATGATAACA-TTGCAGTTTAAAATGATTATGTTAACTTTTACATAGTTTACAATTTTATTCATTTATTGTAATATATAtgtgtgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtATACATAGACACATACATAGAGAGTTATACCTAAACTTCATTATTAGAAAGAATAAACAAATTGTGTTAGTTCACTGTTCCATCACCTAGATCATTTCTGGCATATTGTGTTGAGCTTGCAATGGTTACATATCTGACTTAGAGAGTGACTTCAAGAATTCAAGAAAGATTGAAGTCTACATATTACATATCATTGGACAGACTAGTCTAAACAGATATTTTTCCTTGTGTTTTCTCTGCA----CAT------ACTTGCCTTGAAGTAGCCTTAATCTTATTTATCACATTGCTGTCA-TCAGGGTAAC--TGGAAGCTTTAGAAACTTCAGCTCCTAGGTATTTCTGCCAATAAAGGTAATCCAGGAAATAAACCCAACAATGAGGAAAGACCTCGTTC--CTTTGTTCACCAAGGAGTCCTCAC-CCTGCAAGACTGGATCTAAACTGCAGCAGCACAGAGCTGACCTTTAAATCTTGGCTTGTCTGTATCCCATTCCATCTCCCACAGGGCACAGCCTCACTGCATGCAGTCTGTTCCTCCACTGG-------TATAATTTCACTTTGTTTTACAGCTGTTAACCATCAG----CAACACTATCACCACTAAACTGT---TGTGAGATTCAAG--AAGAGATATtatctgtctgtctgtctttgtcggtatgtctgtctctgtctgcttattaatctACACATCGATTCAATACCATT-------CTGAAATGAGAAaaaacaactttgagagttctctctttccccctccctctttttttcttcctttcttcctttcttcctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcctctctctctctctctctctctctctctctctctctctctctctctctttctttctatttttcctatcacAACAGAGCACATTTACATAATTAGTTATCCCTGGATCCAATTACTGTAACT--CTTTGGATTCTGAGACTCCTGCAATGTATTTGCAGCT------TATACAAACCATTAAAGAAATCAGAATACAGGACACACACAAATGGCTGACACTTCGTTATTTCTATGATTTT-ATTCAAAACATTTTAAGCATCTATTTCTTTACATATTTCTACTCCCAACAAACTTTTAGC-TAATTTTAAACTCTACTAAGAGTTAATTCAAAAGGTGTTACTGAACAATAAAACATTTTAGTTCTTTTAAAACTTTTACTGCCCCCCCACCCCCGCCTACATTGTTT-CTTTATGCTGGTATAAACCTACCTTACCCTCTAGTCCATTTTACCTCCTTACC-TCTGAAAGT---------ACA-----------------------------------------------GCTAAGTGCTGTGTAGGGCAAGACATGCTTATGAACCTGTTAATTATCCTAGGAAGTATTTTGGCTTTTATATCTTCTATGTGCTTTTCGAATACATCAAATTTACTATTTTGCTTTGTTTATCATCATTT
s HiC_scaffold_1 136698670 1532 + 233722169 ttattTAAGATAATTG-TTAATGTAGTGAGAAACTTATTAAAATTATCTAAG---ATCTGTTCTCACTGAAGTAACTATAAGCATTAACATACATAATTTGTTCTAGCTATCTAGGGTTAATTA---TATCAGTGCtttaaatacatttaacccagtgaatatttttattatttaatgaataaggaaaattattaaatttctgtC-------AATATTGATTTCCTAATTATCTCATCATAATAACACTTGAAATTCTAAAATATGTCCTTAATTTTTA-------TACAGTCCTACTTTTTAAT-----------------------------------------------------------GAGACAGATCTCAAAA----TgttcaaatgtaataattagcAAAAA-AACTGGATTGTATTATTCTTGTCTATCATCACT--GATCATTTATTGAAATTTCTGCAGAGTTTGCAATGGTTTTA------------AGAATGCTTTAAAGAATT---ATGTTTTTGAAGTCTA---GTTAGATATCATTAGACACATTTGTGTTATCAAAT-TTTTCCCTAACAGTTTTTCTATGATTGCATCAGTTCACTTGAGGTGTAGAAATCTTAATCTTTCTTATCACTTTTGTGTCAATCAGGAGAAAAATGGCAGCCTCAGAAACCTTTGCTCCTATGTATTTCTGCCAATCAATGTACTACCAGAGACAAATGCAACAATaagaacacattttttttaacttttttcatcactgatttatCACTCTTTCATGGCTGGATTTCAACAGAAGTATCACAGATTTTACCTTTCAGTCTTAGCAAGGCTGAATGAAATCCTCTCTCTCAGAGGA-ATTGCTTCCTTGAATTCGG---GAACCTCCATTGACCTTTTCTATAatttgactttgatttat--tttttacctaTCGATAGTCAACATTAACACTG-TAAGCCATAAGTGTGAAAATTAAGTTATGAG-TACTATCAG-------------------------------GCCTGC--AATCATTTATACACCTATTCAATACCATTCTCTTAACTGTGAGGCAAAAATACAA----------------TTTGCCCTTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAACAGAATCAATTTGCACAATTAGTTACATCTTATTGTAACTACTTTATTTACCTTGGGACTTTGAGA--CCTGAGGGGCATTTACAGACAGAAGATATA-AAGCCATGAATGGTGTCAAAAATTGCTAC-----CTTTTGGCTAATATCTGTTTATTCCaatgattttcatttaaaagtcTTTACAGCTCTATTTCTtga-----tcccccccccaaaagagaTTTAGTATGTTCTAAAACTGTATTAAAAGTTAATTCAAGGAGGTTTACTGAACAATAAA--ATCCTAAATCCTTAAGGAccattttt-----------tccaaata-attgtTTCCTTTAAAGTGGTATAAACCTACCTGACCTTCTAGTAATTTTTTACTTCTAACCAACTGAAAGTTAATGAACCACAAATTACACTGGGGAAGAGAATTGGCTTTTTACAAGGAGCTGGAATGTGTTGAATGCTGTG------AGAGAACATTAACAAATCTGTCAATTAGCTCAGAAGATATTTTGACTTTTATGTGTGCTGTTTGCTTGCTTAAGACATCAAAAGAATTCCTGCATTTTGTTTAGTGTTATTT

a score=44421
s chr3           150134713 1834 + 160039680 CAATTTCAGC------TGCAGAAGTTATGA-GTTCTCATTGAAAATTCCACCATCACCAAGCCATATCTCAGT--CCATAGTAGATTGAGGTCACATTTTATGTATCATAGCCAGAAGTCATGAAGTGTCTTTCGAATTTATTTCTGAAATGCTGTAACATATTCATTTGCTTTTTTGGAAAATACCATGTATTTTATAGTTTTT----AATTTCACTTAAGTACTAAACATTTTAACATTTTAA-CATACTGTATATTCAAAGAATT---GTTATCAATTAGAAGAGTTGAATTGAATAA---------------ATTGTGTGTCATTTCATTTAAATCTTATTAGAGCTGTTCTAATAAATATTTTTATAATTCTCTTTCATGAAAATAA----TTTTCAATTGCTTCTTAGCACAGAACCAGTTATTCACAAATAACGTGAGGCATACTTTATGAGTGGTGCTTTGTTTTGATAAATATTAAAGCCTTCATTTACACTAGTGAACAACTAATTTTAGGTTACTTTTGCAATGGTATGGCATGGGTCTTACTAAGATAACAAATGCATAAACCAAAAAATAATTAACATTTGACTTCATTATGAAGAGTTCCATAT-GAGCTTAGG-GTACTTCTATTTCATTTTGTCCTCTTAACACAAGGATAATTATGACATAAAAGAATAAATTCATTAGCATATG--TTATCACTACCTGTATGTAGCAGAGGGGTTTTATTA-GGAAAAAAGTCCACGTTTTTCTAGACCGTTACTGATTTAATCATGAAATTAAACTACTATATTACAA-AATAATGCAACACATAAAAATATTTGCCACTGTAATAACTTTGATGTCTGAGTGGATTAGTCCACCAT------CTCAAGTGGTACCTTTTTATTTCAATAATATTCTTCTTACATATTCAGAGAACATATTTTATAATAAGTAAATGTGGCCATAAAAAAGTTATTATGCAAAAAAAATTATTATGCTAGTGATTGAGACATTCAACTTTTTCTTCACATTTAGTTCTCTAATAAGAGGTAATTGACTGATACTGTTGACTTCCTGTAGGTTTAATTCTGACCAATGGCCAACATACTAATAAATCATAATTTACATACTAAGTATGGCCCGTACATTTTTGTAGAT-TGAGGGTTAAAAACATATCATGTCTGTGATTTGATCCTTTAGTAACCTGATAGATGACAAGCTCACCAACCTTTTTTGCTGGTCAAGAGATGATTGGTT--GATGACTTTTGCCATTGG-----TTGTCATTTTCAGTCGTAAATGAGGGATACCATTGGAAAGTCGTATTATGACCCAGCTAT--ACTACTATGGTGTGCTTATATTGCAAGACGAAATAATACTGCTACACAG-ATACCCCTAAGTACTACTCCATTTATTTTTAAATGTTCCTTTCAGTTTATAAAGATTATCAT-------GATATGTCATGACAATTTTTATAAGCCATGTCAAGAACATGTTTTA------------AATCTTATGCAGCATACTAGAATTCTATGTAGGTAGT---ACATAT-----CTTTAAATGTGAGCTTCCACTGCTGATAAGAGTCAGTGTAAAACAACATTTGGTGTAAAAA----CAACATTAATGGTTGAGCTTCCCAGAACCATGTCTGTT-------GTTCATTTCATGCTTTT-------ATACCCACTAAGATAATAAGAATGC--CAAACCACAGATCAGATCTTTACTGAATTTTGGTCATATAATAAATAAATTTTCAGGTTATAGTAACTGACTAAATTTACACACATAAGTAAAATTCATCTTTG-CTTTTAAGGAAAGTTTTTTTTTTCAAATCTTTACTGATGAGTTTTTATCTGTTAATTTGTCTGACAAAATCTCACATGGGCATATAAGAAGGAAATCAAAACT
s HiC_scaffold_1 136730123 1825 + 233722169 CAACTTCAGCCGTTTATGGAGAAGACAAGATATTATCATTGGAAACTGTACTA--ACCAATCACCTGCCCAGTTTCCACAGTACCTTGCaatcacattttatatattaaagcCAGGAGCAATGTAATATTTTTGGTATTAATTT-TCAAGTGCTTAAACATATGTTTTTGTCTACACTGAAaatatcat-----ttacattttttttggaaTTTCACAGAAGTACTTTCTATTtcgatatttaaaataaaatttatgctcAAAGAATTCTTGTTAGCTATTCCAGAGGACAAATTTGGCAATTACAAGCTTCTTGCATATTGTCCTATTTCATTTAAATCCTATTAGATATGTAGTAATAAATATACTTACAATTCTCTTTcatggaaataaattattttcaattgcTTTGCAGCACTGTAACGATAATTCATAAAGGACTCGAGATGCACTTTGTAAGCAGCCTTTtgttttgataaatattaaaGTGTACACTAATAGTAGTTAACAACTATTTTTAGACTACTATTTTAATGACAGG--------------ATGAAGATAAATACATGAATTGAAAGA--GTTaacatttgatttcattatgaaGGGTGCCGTATTGAGCTCAGAAGTACTTTTCTTTCATATTGCCTTTTTAACACAAGTCTAATTATGACATTGCAGAATAAATTTAACTACAAACTGTTTATCACTATCTATGTGTAGCTGAGGG----TATTGTAGGAAAATGTAACCAATTCCCTAGATTGTTACTGATTTAATAATCATGTTTAACTGCTACATCCCAATAATCATATAACACATTAAAACCTTTGCCAGTATAATAACTTTGATGTCTCAGTGAATTAGGCTGCTATTCATATCTCATGGAGCACCATTACATTTCAATAGTAGTCTGGTTACAAATTAGTGGAGTATGTTTTACTATAAGAAAATGTAATCATAAAAACGT------------------ATTATGTTAGTGATTTC-ACAACAAGGTTTTTC--CCCGGTTAGTCCACTAATAAGAATTAACTGACAGACCCTGTTGACTTCCAGTAATGTTAATAATGACCAATGACTAACACATtaataaatcataatttaaatACCAATGACGCCTTTGAAGTTCACAGAGATATGAGGTAGTAATGTGGAAAGTGTCTGTGACTTAATCCATTA-CAATTTACT---------TCCCACTGCAATTCTCTGCAACTC-AGATATTTTTGGCTTGGCAGATTTTTGTCATTGATAGTCTTTTCATTTGCACTAATAAATTAGTAATATGTATGGAAA-TTGTATTGTGACCTACTTGTAGATCTCTATGG-ATATCTGTGTGTTGAGATAAAAAGATAGTACTACTTGGAATACCTGAAACtattttcaaatatcatttaAATTATGCTTGTCATTTTATAACTATACTTCTGGGGAGAGATATCTtactggaatttttaaaactgtttcccTGAACATGCCTTAATGTCACGCCTTAATAGCATGTAACATACAGACATTTTGAACATGTAGCTCaatatatttgtgttttgtaTGTGAATCATCCTTGCTGCTGAG------------ACTACTATTAGTCTACAGAGTGCCCCCAGCTAT-GTTGATCTTCAAAGA---ATGTCTTTTTATGCAAACTTGATTTGTGTTTTCAATGATAATTCATGCTAACTCTATTAGAAGTCTATAAACTG-----TAAACCTTAGCTAaagttt-gtcttaaaataaatgattCTTTTAGCTAC----ATGGACTACCCTTACGAACATAGATACCTTATTTCCTTGTCATTTATGGAaaagttttcaat---aattttttctgATGAAATT-------------------------TCCTATGtggacataaaagaagaaaataaaagct

a score=19267
s chr3           150148651 813 + 160039680 tAGAAACAATTAT----TAACAAAAACTGTAGTATATGGAAATAACAGGGTAATTTT---AATTCACACATAGTAAGCACTATC---------ACAAAAGATCTCAGTGCTGTT--------AACAAGATGCCACA-GGGTCCAGTTATATCTCCAGTTCTTATGGAGAGAGTTACTTTGGG---AAATTTGGTAAAAAAATCGCGTTTCTTAACTATGAGGCAGGGATAGTGAAACAGTAAATATTTACTC---GATTTGTGAAACTTAAGTGCATTAATCTATGTAAAG-GTTTTTAGTCATCTGTGGAGTTTAGAGATGGATTACCTAA---TGCAATCTATCATCACCATTAT-TTTTCTGCTCTCAGTTACTACTTTATAACTGAGTGGAACCTTGCACATGGGGCATTTATTGTGCACATTACACTATAGAGAATCAAGATTAATTGAACAGTTGTTC-TGGTTTACCTACACTGTCTTAA-CTGCACTGAAGGCTACGGTAAAGACAGAGATCAATATAGACACAGTCTTCCTCTCTACAGAGCAATGTTACTGGGGAGCTAGGCAATTAAATGAGTTGAAGTGAAAGAGGGGGTGC-CCCAAGAGAGCCACTTGTGGATAAAAGTGCTTTAAAAATCAAGTCTTTCCCAGCAGTAATTTCCAAGGTTTGGCCCAGGATTTGTAGAGCTGAGAAAGCTCTCATTAAGAGGTGAGATGCCTTAGTGGCTGTTCTTTTCCTAATCCCATTAAGTTTAAGGAAACATAATTTGAAAACCTACTG--GGGCCATGA--TGAATTATGGTAGGAACC-TGAAGTGAGAAAGAGCTCTTGAAAGAAAGTCTAAGAG
s HiC_scaffold_1 136742156 832 + 233722169 TAAGAATAGTTATCACATAAAAGATACTGTAA------GAAATACAAGGAAGGTTTTGAAAATTTAGATACAGTAAGGaatttctttcaaaagaaaaaagaaatcaatggcTTTCAGGAGATAAGAGAATGTCACATGGAACCATTTCTACCTC---TTGCTAGCTAGGTGTTTGCAATGTATCCAAACTT---ACAGTGCTcagttttcttttatgtaaaGTGGAGATT------CAGACCATGCCTACTCCTGggtatgtgatttttaaatgaattcacCTATAGAAAGCATTTGGAGTAATCTTAGGCATTTAGAGa-aaattccataaatatttttttttttgtcaccatTAGAGTTGCTTTTCTAACTTACGACTTTATAGCTGAGCAGAATTGAGCGTGCTGAGGAGTGATTCTGCTTTCTATGTCATGGA-AGTCTGAATTCATTTAGCAACTATTAGTGGTTTACCTGCATTGTCTGAGGCTGTGCTAACCGCTGGGATAAGAGCAGCAAACAG----GACAGAAGCTTATTCTCTTCAGGGCGGC-TGGCTGGGGACATGTGCAGTGAAATGAAttgaaatgggagaaaaaaaatgcTCAGAGGAGTCAAGTGTGGATAAAAGTGCTTTAAGAACCAGATCTTTTCAAGCAGTAATTTTAGAGATTTGGCCCAGGATTTGTAGAGCTAAGAAAGCTTTCATTAGGAGGTTAGTagtcttagttactgttctttTCTTAATCCCATTAAGTCAAAGAGAACATAATTGAAAAACTGGCTGAAAGATAATGAATTGCATTGCGATAGAAATTATAAGAAGAAGACGAGGTGCTGTGAAAGTTTCTAATAG

a score=77227
s chr3           150151118 2506 + 160039680 CATTGTTTTTAGGATATACTCATTCCTCCCTTCCTGTCCCCATTTCTTATGTATCAAACAATAAGACTTGACTAGTGAGATTAGATTTACAGTTTATGTGAAATATTTCGACAGATAAGAGAGTTACATA--TGGTCAAATTCTCAATAAATGTTGAAGAACAGATGAATTCATAAATTTAAA---AAAAATAGAAGGTTT-----------CCATGGCAATTGCAGTGTAAGCATATGGGTCATTTCAGAGAACACCTACTGCACGGACCAGTGTTTCCAGGAAACACCATTGTTTCTTCAGCCTAACACATTATT-TCTCTGATCCTTTTTTTCAGCACTACTCATGAGAATGTTATGCTAGTAAACCTCAAAATAACTGGAA--GTAATTTAAGTATTTAAGGAAAAAATCTATAGTTAGTTGACAGTCTGTTTAGAGTCCCACCATTGTCCCCCATTCACACGCAAAAAAAGCCAGGAAATAAAGAT---GTGTCAAGTACAGCAGCACTTAAGCCCTGTTGGCTGACGCCCTCTGTGTTAACCTATAACCTCTGGGTGTTTGGATAATAATTTATTCATTAAACCATTAACTCTCTTTCCAGCAGT-TTTCCCTATAAATTTTTAACTGGGGC-AATTCTCCAGGTATCTTCCTTTTCCAGCTCACCCCACCACTTCTCTCTTG-ACGCTGTTCCCACCGTGC----------------------------------GCCAAT----------------CTGAAT---GTTTCATGCTGAAACTCCTTTTTCTACATG---TCAGTTCTCTTAAA-CATTATACAACCCGCTTGAGACTGCACATTATGTACGATAAGCTCAGATGTGC-----ATGTTTTCCT----------------TGGCTGTTTTCTGTGCTTCTCAATAATATGGGGGACGAGTAAATCATCTACCTGCAGTTCAACT-CTCTCCAAGTTCAAATCTGTGGGAAGGCTTGCAGATAC-----------CTTATAACCTCGAAG------TCTATGTCAAAAGCAGGGTTTTAATCAAAGACCAATGAATGACCTGCTCGGTAAGTCAGTCTACATTCGGGAGGGATCGACTGGTGCTTA----ATTTGATATCAGATCTTCGGATCTGTCTTCAGATGGTTGGTATGAGGATATG-GAACACTTTAGCACGTTCTTTTTAAGTGCTTGTGATTATTATCAGCACTTAATGGTTAATTTTCTGTAT-------AAACCTTGGCTCTAGCTGGGTGACATGAACATTATCTTTGTGTAGCTCTTAGTTCTTGTATTTAAGTAGTTGGGATACTTAAAACACTTACAGGCATGAAACCAAATATGCCTTTGTATATATGTATGTGTCCACTTCTCCATGGTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtatgtgtgtgtgtgtgtgtAGAAAGCAAGAAGGAGAGTCTGAGCTAGGTGTTAACCCT--------TGAAAAGTTCCCACTGGAGAAATCACATT---ATTAACCCACTTCCTCTCCCAGGGAGTCAGTA---AATGATGCAGGCT-TTCTGTGTTCTTCCTGTGTCTGTATATTGCTGCTTTGT--CTCTGTGCAGTGGCTATAATTCCTCAACAAATAAAGGTGAACTGGAGACATGAAATAATTTTAGCCAAGTTGATATACTTTGTAATTCTCTCTTATTTTGAAGCAGGTGCCAGGAAAGAGATGATAGTGACATGGAAGAGGAAATCAAGGCTTGGAGAAGATTCCT-GTTTTAAAAAAATAGTTTAAGTTTGGTTCCAGAACAACCCTTAAATTTTGTTGATTTTTGTTCAAGATTATAAAG----TCAATGGATTT-TCCCTCTTGCAGGTATGCCACTTGGAGTCTGTGACAAACAATAGAACAGATATTGAAAAAATGCAGCCAGGTGACAGGTACAGCTATTTGGTTTTTG-CCTCTGAATAATGTCTGGTGACAACACAGATGTTAAACACAAAATATTACAGGGATTAATTCACAGTGCTCTAGTTTGAATCCAAGGTCATGTGCAGTGCAAACAATAAGTTACAGTCAGGCATTCTGTAGTGGCAATTAGAGACCACCTAGGGTGGGGCTGAAACTGAAGGTGCCTCTGACCCTAGGAGGCCGGCACTCACTTCAGTGTATGGCCTCTGAATGCCTTCGCCTCCATATAAATTAAACAAAAGTGCATTTTCTCCCCTTTAGGGAACAAGCAATGCATGCATTAGATCCTGCAGCCTAAGCATTTCCTGCTTCAGAATCGCAACAGAATCTCCACTAAACAGCAATTAGCATTTTAATAGTATTAATAACATTCCTGATTTTAACAATCTGAAGCCTTCTGCTTTTTTATTGATGTCTTTTGTTGTAATTTTGTCTAATAGGGTGCCCAGGGTAGCAAAACATAACCAATTAGAGCATTTGCCAAACAGCAAGGAAGCTGGATCATTTCAATTCTGCTCAACTAAATATAAACATGGTTGTATGTGAATAACATTTCCAGCCAGCAAGACTAAGAGAGACACTGGATATATAAGCCCTAAGGTCCCC--TCCTTGC---------CCAACACATTAGAGGAATTGATGG--TTTGCAACACTAACTTCAagat
s HiC_scaffold_1 136743349 2569 + 233722169 CATTATTAGtcaaatgtattttttccttactGCTTATACTACGCTCATATA---CAAGAAGTATGA--TGCTTACTAAAATTACACTGACtatataattgaaatatttttctgaatagGAAAGTATCAGAAGTGGTCGCAGTCTGAATAAATGACAGAGAAAAGATGAATCAACTTATGGAAATCAAAAAATAAGAGTCTTAGAAATAAGTACAGTAGCAACTGAAAAGCATGT-TATgtctcattttaaagaaaatccttTTCCTTCACCAACATTGCCAGTAAACACATTTA---CTTCAGAACAGAACGTTGCCCTCTCTATTCCTTTTCCTCCATTCTAccttataaagaaatatattaggAGACCTCAAAATCACCTGAAAAGTAAtttcaccatttaa-----aaatatgtacctgATTTATAGTCTATTTAGAA-CTCACC------------TTCCAAAAACAAATGGCAATGTACTAAATATTATGTGTCAAACGCAGGAGCACTTAAGACATTAT---TAAAGTTCTTTTAGTTGACCTTTCACCTCCTGGTGTTTGTAtaataatttattcattaaaCCATTAACTCCCTTTCCAGCAGGATTTGCCTATGAATTTTTAACTGGGGCCAACCCTCCAGATGTCTTCCTCCTTTTACTGAATTCTTAGCCTCTCTTTTTCACCCTGCTCACTCCTTGCTTCTTATCAGCACTCACTAGTTAACATCTGAGAGGCCAGTAGGTATAGCTCTCCACCTGAATCAGGTCTcatactaaaattattttcttcacacAAACTTGACTCTTTTAAAGAACCACAAAAATGTTTCTAGCTTCTATGTGATACATGATTGGCTCACGTTTACTCattattttttcccctcattGTAATTACTAtagtttttttctg-gttttgaaataaGGGAAAATGCTCTTACAACACCCATTtataattcaatttctttttatgctCAAATTCTGCAAATCGCTCCCAAAGATGATCGTTTCTTTCTGTAATGTCTAAGAGAAGACCTAAG--GAAAGCCAGGA---AATCAAAGACCAGTTACCAGACT-CTTGGGGAGTCACTCTGCCCTCT-----------CTGGTAACTATTACATTTATGGCCAAATTTTGTGATCTGCCTTCAAGTG-TTGAGGTGTAGAGTTGAGCACACTTCA-TGCTTTCTTTGTAA-TGGTTGTGATTTTTGCTATGATTT--TTGTTAACTTACGGTGTTCATGTGAAAGTATTTCTC-AGCTTGATGATATGAA--------------AACTTTTAGCTGTAACAATCATGTAAA-AGGACATAAAAGACACT-----------GGTTAAATAT----TCGAAAAAAcaggtgtgt----gtctctgtg--tgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgtgcatgagcgCATGTAtagaaagaaaga------ttttaatcTAGGTGTTAACTCTAGCATTTAGGAAAAGTTCCTgttacagtattttaatttttattaaaacacttCTTTTTGCATGTATTCACTATTTAATAAAGTACactgttttgtgttatttctagACGTTTAAGTTGTTACTATGTTTCTCCCTGTGGTGACTGCATTCCATCAACAAATAAAGCCATCACAGATAagtgaaatcattttgctttagtaaaTGTGCTTTGGAatccttctttattttaaagctgTTACCCCAAAAAAGGTAACAATATAATT--AGAGAACATCAAAGTATGTGAGAGATTCCTAGGgtttaaaaaatggttttattttacttc-agtGTTACCCCTAAAATCTGCATATTTTTGTtccagaaaataaaggaaatgaatagATTTATTGCTTTTATAGACATTCCATTTAAAGTCTGCAGAAAACAATAGAATGAACTTTTAAACAGTGTAGT-AGGAGATAGATATGGCTATTTGTTTTTTGTCCTCTGAAAAATGGCTAGTGACAGCACAGATGTTAAACACAAAATATTACAAGGATTAATTCATAGTGCTCTAGTTTGCATCCAAGGTCATGTACAGTGCAAACAATAAGTTACAGCCAGGCAGTCTGTAGTGGCAATTAAGGACCACCTAGAGTTGGGGTGAAGCTGAAGGTGGCTCTGGCCCCAGGAGGTCTGCACTTACTTCAGTGTACCTCCTTAGAATGTCTTATTGTTCATATAAATTAAACAAAAGTGAATTTTCTCCCCTTCAGGGAACAAACAATCCATGCATCAGATCCTGCAGCCTAAGCATTTCCTCCTTTAGAACTGCAACTGAATCTCCACTAAACAGCAATTAGCATTTTAATAGTATTAATAACATTCGTGATTTTAACAATCTGAAGCCTTCTGC-TTTTTATTGATGTGTTTTGTTGCAATTTTGTCTAATAGTGTGCCCAGGGTAGCAAAACAAAAACGA-TAGAGCATTTGCCAGACAGTAAGGAATCTGGATAGCTACAATGCTGTTCAACTAAATGAGAAAACAGTtgtatgaaaataatatttccag---ATGAGACTAAGGGATGTCCTGGAATTATCAGTTTTGTCTTCCCTAACCCTTACTAGTGTCCTTCAAGAC-TAAGGCAAACTGATAAATGTTCTATAACTAACTTCAAGAT

a score=26561
s chr3           150167561 2658 + 160039680 tatacatacatacatatatacaacacacatatatCTGTATTCAATTTTCTTATCTATTGTATTCACTCTACTACTCTTGATGTTTGCAGGTACTTTTGTTAAGAAA-------GAATACAAAAGATCCCATGTCCTGTGTGTgggctgatgacatggctcagtgcaaagaataagcactt-cctgctaagcctaacaaattgagtttgaaccctgagacctttatggtggaagaagagaattCCCACTTTAGGCCC----------------ATGGAATATTTGTAGT----AACAACTTTGAATCATCGTGATACTTTTAGCTATTAGGATGTAGTATTAAAAATAAGTTCAAGG-----GTTAAAATAA---------AATCACAGTGAAAAATCAGTAATAAACTCCCT--TAAGCTGAAAGGG-ACTTTTAAAAATAATTTTGATCAAAGTATTATTTTAGTAATGAGCTGCTATTTATTTATCCTTATTTGATTTAGACTTTGA--TGCAAAGCACATATTTAAAAATGTTTTATCTTTTCAACTGGAGTTGTATTATTATTTAAATGAAA-AAAATGATGACAGTATACACATATAGACATCACCATTAACAGGATAT-CTTGTACTTATTTTTCCAATATTAAAGCTAAAAGCCAAAGCTTCTTAAGTGTAAATGGGCCTTTCCACTCATTTTCTCTTATGTTGATTAAAGAG-AGAATTTTTAGAAGCAGGAAAATCACAATAAAAACATATCAAAAGCCAAGACTGAAGTCAAATCAATGACCAGGTTTGGTTGATTTTCTACTATATTTAGTTTCAGCATTGATCCAATATGGAAAGTACTCTGCATACTATGAAATCAACACTATG---CCTTTTATGCAGTGGTATGTTAGATGAAATGGTAAATAAACTACAACACAG----AAAATACCAAGC---------TATACTAAATGAAAACAAAAGAATATTTTATTAAACATTGAGATACACAGGAGAGTACAATGGGCTTTGACTCCCCACTGGCTCATTTACACACACACATTTCCTTTCTG-CGATGATTATCATTTGGGAGCAGAGTTATCAGGCTCTCAAAAGAAATGATGTCCTTCTTTTCCCATTTAGATAAAATATTCTGTTcaaatgct-cctgatatcctgatggatatgtgtgtaaatgagccaatcattagtattgcaggtctaacattcatatgatatgttctgatatcagccttttcaccc------ctaaatggactttaagcatgtcaatctgtattaaga-acagtcacccaacacgaggctcgttcataatgaaaatttgggcattttgtgaaattcatggaccacagtaatggcatgaaaatacagagccattttatagTTTCATGTTTGT-GCCACCTTGGTGTGGTAGACAAATGAAGAAATCAAACCATTTCAATTTGAGAACCATGTGGCTTTTATAATCACGTCTATTACATTTCAGGATACCTACGAGTGGGAGTAAACCTTATGGATGAGGA--------AAATGCTGTGCTACTTTTTTGTTACGTTTCCTTGTCAACCATGGGCCCATGCTGCGGAATAGAGTTTGAA-----CTTCTACCTCGCCCATGTGGAAGAGCGGTACAGTGACTATATACTGTCCCGACAAGGTTATTATAGTTGTAATTTACCTCATGGGAAGATAGGAAAAGTTCACTACTTGAT--TTAAG-TACTAAGAACACAAGTGGGTCAAATATCTTATGGCTATTTCAAAATGAAAAAGTAAAAAAATGCCAtttttgatacgatctcctgctatgtaaccccaactggactgcaacttggtatataaaacagtctagccttttcctcacagtgatgttcctgtctctgcctcccatctgttatgatcacagaagtagatttccacTTGGGTTATTTTGAAATTTAT----ATCCCAAACACCTGAGTCTAATTTTGCACATA---CATCAAAAGAAA---AATAAAAGCAATATTACAGAGTTGGAAAACAAGATTTTTAATTTA------AACATTAATGTTTGTAAAAATAATAAGCAAAGCAGTGCATAGGCTATTCAACAAATAACTTTTACCTCTATTGTTCGCAGCACAGTAGCTGAAGGGTTGAC----AGTATAAGGTCTGGACTTTGGAAGTTACTCTATTAGTCACTGCAATTCA-CATAATAATAATTTGTGAACGTTTATTTTGATTTCTTTTACATTTTCCCAAAATGTAATCT-----TTTTCATCAT-----TGT-TGTAGTACTTCT-----------------------------CATA-------ATTCATCCTATTTTAAAAACTGA---------------CTGT----GCTG------------------TGCCTAAAGGAAATAGAATTGAGGATAGGCCCA----TAGTAGGTAGATATAACTGTAAATCTACCAAACAGATACCTATATCTATATATCTTTC---TTTTAGTCCTATTTAATAGTAAAATTAGATTTGCTAAGATAAA-TCAGAATGTCATTCATTCTAGAGAGGAGCAGAG-----ATTTTAAAGAAAGTTCTAAGACTTTCTCTACCCACTCACA-TCAATCCTACTCAACCATGACTCTGACTCGTGTGTGGTAACTGGAAGAGGATGAAGCTCGCTTTTACCTTGGAACAG--GGTTTACACGTTCCTATCCTCTTCCAGTTACTCCATCCAGGAAATAACCTCTCACACCTATTAAGTACATCAAAG--------------AAATTTAAAGACAAGCTATGATTCTATCATTTGCAACATTTGCCA---------AGTGACAATAGGAAAATAAAAAC
s HiC_scaffold_1 136752690 2570 + 233722169 tacatatatgtaaatatatataatatacatatacataaatttaGGAATACAA------ATAACCATTCTGCTActcttattattt-----tactttttttgtaaaataaatgggAATTTAAAAGGAACtata-----------agctggggatttagctcagtg----gttcaagaccttgcctggtaagcatg-ca---TGGGTTTGATTaccagtac--------taaaaaataaaaataaaaacgaaaGGTACtatagatagatgataaataaattgtttattatttagaaaaactttgaattattttgaaacat--aGATATTAGGACTTATTACTAAAAAGTTATTCATGAAATAAGTGGAAGTAATACATGTTGAATCACAGTGGATCTT--ATTCTAAGCTTTTTATTACCATGAAAGAATGCTGTTCTA--TTATTTTGATCACAGTACTATTTTAATCATGGtct--cttttatttgttcttgtcTCATTTGAGctttgaaataaaaggaatatatttaaaattattcatcttTTTCAATTGGAGTTGAATTATTTCTCAAGTGAGCTAAAATGGTGATCATATCCACATACAGACATAATCACTAACTGACAATGCTGGCCCTCATTTTGCCAATATAACAGCTAAAAGCCAAAGTTCCTTAAATCTGAAGGAGACTTTCCAACCATGTTCTCTTATGGTGATTAAAGAGTAGAATTTTTAGATGCAAGCACATCACAGGAAGAA-ATATCAAAAGCCAAGGTTGATGTCAAATCAATGACTAGGTTTAGTtgatttt-tgttatatttggATTCAGCATTGATCTCAACTAAAAAGTGCTGTGCTCACTGTGAACTCCAAACAATGTGTTTTTTTATGTAATGGTATATTCGATAAAA------------TACAGCACTGTACCAAAATGCAAAGTAAGAGAtcatcaaataaatataaacaagaaaGCGTTTGCTTGAATATTGAGA-GTGTGGGAAA------------------------TTGCTCTTTT----------TTGTGTTGTCTGTTAATGTTTGTTACTGAGGC----AACTATCAATTTTGGGAAAAATATCATGCCTTTGCTTTCCTTCTTAGCTCAAAAAACTCATT-AaatgttattttgtctcacaataGGGTTATAGACCGAAAAACC---------TTTtgtaagttaaaaatacaaataacatat-------CCAACATATTTAACCTCATAGTTAAACATACTTCAAACACATTAATTGATAACTGGACAAAATTATCCACAAAATGTCTGTGTTATAATGAAGtgttaattatttcatttaagttATGGAATACTATACTGACAGTGGAAAACAATG--GTTGTGTGTGTTCATGTCTATAGCCATTTGAAAGTTGGA---AAGTTGTTAGGTTGAACTATTATAAACTGGAAAC----------TTATCA--------------------GATATCTTTTAGTAACA--AAATGTTGTAAAAGAGTATCTTTTTCATTTGCT-CAATATTTTCTTGCTA--TTTCCTTTT--ACTAT--------------GAAAAGTAACTAAACCAGTCCTCTGTTTCACACAT----AAACATTGTACA-TGACTGGAT-TTTTCACAAAAAGTTTATCAGAG-------TTAGGTCATAATA--GTACGAAGCATTCACTATTTGATAGTGATGATACTAAG-ACACAGATGGGTCACCTGTTCAACAGctatatttaaaggaaaac-------------------------actCCCTGTTAAGTA------------------------------------------------------------------TTCTATTTCCTA------------ACTGAGGTAAAGGTTCATTAGGGACCTGTCAGTTTTTGTAGAGATCTaaattacttaaatat-attttattcttaaattatcaaaagcaaaataataaaaccaatatT-CATGGTGATAGGATATGATTC---ATTTATCACCTTGTAATAATGCTTCTGAAAGAAAACTATGAA----TGTGTAACCTATCTAGTAAATTAATTTTATCTCCAATCCCTTCAATTCACCATTATACAGATTGATTTTGAATACAGAATTAAAGTGTTT--AGCAAATTCATTAgtctctaaaatttatttttaaaaaattttgataaatcatattttga-ttcatttatatttt---aaaatggtatatatatgtatataccatatatatgtatatagtatatatatatatatgtatatatatatatatatatacatatatatatatccatca-aTTTTGAGGACTAAGTAATTTACCTAAATTTGTTATAGCTGAGTTCCTCAAGAATATCTTGAATAAATGCAACACTATTGCAAATAAACACACAAGTAATTGATACATAGAATTTTAAGTCTATGGAAC---TACTTGTCTGTATTTATCCATCGTGTTCCAGTTCTGTTAAGcattaaaatcaattttagttGCATAGGTTCAGAATATC-TTACTTCTAAAGCAGAAAACATCCtccagtttaaaaataattccac-CCCTTCCATAAATAGTTGCACTCATTTCAAAGCAAACAGGGATCTAATTCAAGGGGAGAAGTTAGTTTTAGATGTAGCTTAGTCTT-CTTTGGTACAGTTAGTCTGATCGAT------GTTTGCTAGTTGTATTGACTTGTTGGCAACTTTTCAGTTACGCTAAGTCCATAATAgttatatttttgtgtgtattttaaagcAAGCTATTA----AGTACTTGAAACAATTGCAAACATCTTTTAAAGACAAT-GGAAAATCAAAGC

a score=37802
s chr3           150171839 1224 + 160039680 GTTCAACATTCATTTCGTGCTTTTTAGAACACAAAACCAGCATACATCGTACATGAAGGTCACAGCTGTT-AAAGCACATTGACTATAGGTGCTTTAGAACACTACTGCTGTGGCTCATTTAGGACTCATCATTGCCCTGAGGTCTGAACCACTGTCTTCTGGTTCTGTAGCGTTTGAAAAACTTGACATGGATATCTGTGACACAAACTGTCAGCTTGGTATGGGAAGAGCTCAGCTTCTCTCATTAATATTAAACTTCTGAGTAGAGATGGGAGTTGTGTTGCTGATACAAGCATTTCTTTTAAGGCTGTAGAAATTCATATATTGCTATTGACATGATAATTGAAGTCATATTCAGTAAAATGAATGATGACG---TTATGCTCATGCATTCTAAAAGGAAGGACAGTGGTGGATCTGAGGAAGGAGATGCATGTTAACGCAAAATATGCAACAACTT--TCACCCTTCCTGAAGAGAAGAGACAATGA-AAGGAAAGTTATTGTGGGCATCCATT-ACTGTCCTAATGAGCAACAAAGGGATTGTGATAAAGAAAAGTTATTGTCAGTCATTGCTAGAGAATATAGCTGAATCGCTACATATTTTTATGACAGTGCAGGCAAGTATAATTTGGATGTAAATCCTGTCTCCAGTGTACCACTTTGTAATGGACTTCAGTTGTACTACATTCAGAATTTAGGATGGAGAGAGACAGGACATCAGATTATTGT-----------CTCTAACAAATCCTAACACAAAACTCCCAGTGACTTCAGAGGACACTAAAAATTGTGGCCAGTATGAGATCTGCTCTTGGCAGCTAAAGAGAAATGCACCCTCCCCTTACTTTGCCTCTTGTA-----TTTTATTTTGCATGTGGCATAAAAATGAGAGGCAAGTTTTATTTTACTGTCTACCTCAACTCAAAGGTGTCTCTTTGAAGTCAGAAATGGGTGGA--ATA-------------------------------------------------------------------TTTTGTAACATTCTAAGT--CATCTCTCCTAACCCCTTTCCCTTTT-GATATATTCCATTCATTTGAAGT---AAAATTTTTATTATGGAAATAAATCAGTTTGAGTGAAAAA--AGAAGACATCATGTTCTGATCAGGTGGATGACTAAATAAATAAAACTCTTGCATTTCTCTATTCCACTATTCCCAGTAAAATTA-GTGCATATATAGAAAGACTTTTCTTCC-AATCTAGTCCATTTACCAATAGCAAATACATAAACTCACCTATCAA---TAGCAAAGCACAT
s HiC_scaffold_1 136756095 1238 + 233722169 GTTAAcctttgctttcttcatttcaAGCAATGATAACAAGCACATA-AGTA-ATGAAGGTCATGCTTTTTCAAAGCACAATGCTGATCGATTCTTTAGGCCAATATAGTTGCTGCCTGTTTATGACTTATTATTGCCCTGAG-------CCA-TGTTTTCAG----------------AAAATTTGACATAGAAATCTATGACACAAACTGTCAGTCG---ATGGG--GAACTCAGGTTCCCTCATTAATATTAAACTTC---GTGGAG----GAAATGTGTTGCTGAAACAAGCATTTCTGCTATGGATACAGGAATCCCTATATTACTATTGACATGATAATTGAAATCATATTCAGCAAAGTGAATGATGAAGATATTACACCCATGAATTCTAAaagaaggggtaaagatagaTC---AGAAGCAAAAGTGTTTTATCACAAAATATGCAAAGACTCAGGCATCCTTACCAGTGTGATGAAACTATGAGAAGGAAAGTTATTGTGACCATCTATTAACATTTCTAACAAGCATCAAAGG------------GAGAAATTATTGTCAGTCATTGCAACAGAATGCAGCTGAATTGCTGCAT-CTTTTATGGCAATGCAGGCAAGTATAATTTGGATGTAAATCATGTCTCTTGTCCCGTACTTT-TAACGGACTTTCATTATACTCTACACAATATTGAGAATGGCAAGAGACAAAAAGTCAAATGTTTGTTTCTGCTTCTCTTCTAAGGACTCTCACTGTAGAACT-CTAGTGACTTCAGAGGACACTGAAAACTGTGGACAGAATCAGATTTGCTCTTGGGAGTTAAAGAG--ATGATACTTCcatttgcttttttgggggtgaGGGTTGGTATTTTg--------gtaaaaactagaaacaattttcatttttct------cttaactCAAAAATATTCCTTTAAAGTCAAGCATTGGTGGATGAtagaggtttctttctttctttctttctttctttctttctttctttctttctttctttctttcttctttctttcatttttttctatgtgcCAACACACCCCACCCTTCTCCCCTTTGGATATATTCTCTTCATTTAAAGTAGCAGAAGTTTTGTTCTGGAAAGAAatca-tttgaatgaaaaaatatatgaagttttaGTCTTGTTAGATAACTGACTAGAGAACCAGAA--CTTGGTTTTGTTGA---------------TAAAATTATGTGCTtgtcaaaacaaacctttcttccaaAACCAAGCTATCCATTAATAGCTAATATTTAAA--AGCCTTTTAAGGTTAACAAAGCATAT

a score=21619
s chr3           150188472 1325 + 160039680 AAAGATACAACAGAGCTTGACCCACCTAATGCTGGATCAGTTTTGTACTTAAACTTTGCTGttaagcctgactgctgggtaaaatcatctagagagcttcttagtcagtatttaaaataataat-gatgcttagacccattctgagaaattgtaatttaattgaccAGCAGTCTAGACCATAGTTCCTCACAAAGATAAGGTTAAAACTCATTGATTTTCTTAATTGAAGGAGTGGTTGTGAATAAAAATTAAGCTATTCAATGAATTTGAGTAAAGAGTAA------TAGAACTCAGGATAAGGGTAAAGTGAAGCTGGCAGGGCCACTGTGTGGCTGTTTCTCAGGATTC-----AAACCCAGGAACA---------AAAGCGAGTGA---------------ACACATTCTAAGTTAGAGCATTTGTATTAGAATATAACTATGCATAGGCAAGCGTGCAGAGTcagctgatgctccttgcccgcggtttccatctttgcaaacttgtctgttctccagaatttatgtgaaaccacaaaaggaatatatatgct--ctttgagattgcacacaggaaagtgcagagcagcagaagaaagaaaaaggaatccttgagccatttattctgaacatggaactggtcctaggttaattttttttt---tctttttaaatgctctgctaat-------ttcaactctagtcctgttaaacaagtgtccctttcagtatgcatttagtgt--atgaattttatactccctgccctcttccttttgctgctgggggcagagacagtgacttccctgcttcacatagctctcgcatctacctttgaagggccaggtagtactacttcccagcacacaatggctgtgatgttccttgtggagaaaatatatg---taaatattc-tctctcaggcatgagttatagcactgttgtttgtaagttcaatgttaatggggttagcactatatattcaa-aaggtgtccttcagccagaatacacattgaaacaggattgttttttgactagttgacaaaaaagttgcataatcagaatgcct-ggaacataatcctgtgtttcaccctgactcaatggctatgcatcttataaa-cagtgttcccagtaaccttgaagaatataaTGTCTAT----GGCAGTTTCCAGCTGTGTGTACAATCATTCCATTTACTGAGTACATTTAAATATAATAATGCTATACACAAtataatcattaactttatatgtctatttggcagcccatactatgtcttggcagttgacaaaaatctgct----ttgggtatgtattt---gagtgtttttggatgagatgaacttgtagaatt-tttgaccaagtaaagcacatagttccccttt
s HiC_scaffold_1 136770217 1253 + 233722169 AAACATATTATGGAA-TTGACACAGAGAGTACAGTGTaaattctgtatttaaatatAGTTCCTAAATCTCAGGGCTTGTTAGAAGCAGCTAGAGAGCTTTCTATtcagtatttcaaaaaataattgatGGCTAGACCCATTCTAGGAAATTGTAATTTAATTGACCAGTAATCTAGACCATagtttctcaaaaagataagGTTAAAACTCATTGATTTTCTTAATTGAAGGAGTGGTCCTGAATAAAAATTGACTTATTCTATAAAGTTGAGAAAAGAGTAACAGGTttggaattaaaaagaaaaaaaaatacaagttaaaaag----CTAGAGGATTTTTACTCAAGGTTCTGctgaaacacagacacacagagagagaaagagagagagacacacacacacacacacacacagagagagag-------------agagagagagagagagagagagagagagagagagagactcattcTTGTTCACGGGTTTC---------TATTTGCCTCATTACCAGGGTTTATTTGTAGTCACAAAAATAGTAATCATGATGCCTTTGAAATCATTTGTGAACATGTTCACAGAAGTGGCAAAAA------------TTTGAGTCTTGTAATAAAAAGCCTGAGCTGA----AAGTCAACCTTATTTTATATCAAATAAGGTGATATGCAACTTTCTTTGTTCATCTTTCATATTG-CAAACAATTATCTTCTTCACCTGCTATTTAGTGTTAATgctttccaaatttc---tcttagttttttgGTTGC---------------TTATTTCCCTACTTTAAAT---TCTCAAGTCT-TTGCTGAAATGTCGTCTTG---GGTTCCCAAACACGAAAAGCTTATGATGTGACTAATGGAAAAAATATACAAGCTAGACAATCTTCATTCAGGCATGAGCGTCACCACTGTTGAGCATGAGTTCATTCTTGAT-GAgtcaaaaatatacattaagtgagattttcttaaaaagaaatacatg-taaaaTAAGGTGACACATTGATCAGTTAACAAAAGTATTATGGGATCTGAACTCTGAGGAATTTACTTCTGTTTTTCACCAAAGATAAAAGATTCAGCTATGTCTAGGCCAGTGTTTCCAGAGAATTTACAGAATATCAGTGCTATAAACAGCAAGAACCAACTGTCTACACAGTCATTA---------------------------AATGATATA-------------------------------TTGGGTGCCCA-----------GCCATTTGGTCAAATAGTGTTTAGGTTGGGTGTGTCTGTGGAGGATGTTTCTGGTTGAGATTGA-TGCTGGAATTATTAGACTGAGTAAAGCAGATGGCCCTGCCTT

a score=43587
s chr3           150192560 1368 + 160039680 TGCTCCTCTCTGTAGATGACCTAATGCAAGGTACAAAAGCCGATCTTCTTCTTTCT----CAGGGCTTTGAAGGAGTTCTTCAAATGCTACTTATGAATAATTTCTAAAACAGTTTATGAGTTGGTATA---GATGAATAAATA-TTATGCAGTGCATGAATGGTAGTTCAAATAGTATTAAATGCATAGATATGAAGT-TGTGTTTTGCCCACTGTTGCTG-GAAAATGGTAGTGTTGTGTTGTTCTTA--AGTTTTAGTATATTAGTCCTAT-TGCTTTGATGTTACATGTGTCCTTCATGCTTGGGTGATTCTTACAGTC----------CCAACAAAGTGTGATACTTCCATCAGAATTTGACTT--AGATCATTCAAAATACAC-----TTAATCTCTTTCTTTAATTAACATTT-TTAGGTAGTAACATAGCAAAATGAAATGCTTTCAAAGGGTACAATTTTCAATTTGG--------TGAATTTTCATCTAGAAGCTTGCATAAAGGAACTAACTACTCATTGT--TTACTTGGAGAGTCTGTTTCTATCTCAAAATGTATTTT---AAACATATACT--GTCACTCAAATCCCGGTTTCTACATTGAATTTGTTTATCGTCACTATAAACAAATGTGGAGCCAAGTGAGGCACTTGgaggaagtcatcagatgtcaacctcaacattttaacaaacacaatttgattttttttattgttgctgcaat-tttgctgcagagatggactaaggttgcgccctttccttttcttataatctatgactcaggacagaggaaggataattaatgcttcgtatagtctgagcaatgctatcagcttttagcagacttattaaagtatggttggtttttaacaacatgctgcttattttcataggctgtctgttgaagctgccatgggttcacaaggtcatataaacataagaggatgtaaatactgtgcgagaatcaaagtggagaaaatgaagaagatcaaagtgatttgatttagagctttcatggaatgcaaggccagaatttgccttcttttcctgaTGATATGAACCATATCCTTTGTAGACTGATGCCTGGGTGGTAGAGCAGTGCTAAAAATATTAATGTATTGAAGTGTT-GGCCTATGTTATTTTAAGCTAAAATAGTAAAGTAAGACTCAAAACTGGAACAAATCAAAACTATGAGAATATT--TTTAAAATAAATCAAAGATCAGAGTCTTGAAGATTTTTTTTGGGGGGGGATAGTGC-------ATATTTTTACAAAATTACTG---TAAGATGTGTATGTTTGTATATTT---------------TAGACTCTTATTAATACATCAATATTAATTAAGGAA-----------GAAGGCATTC-AAAGGTTATAAATTTGTTATGAAACCTGCAAAAGTCTCTGATAAAAATCCAAGCA
s HiC_scaffold_1 136775378 1388 + 233722169 TGTTTATTTCTGTGGTTTCCCTGATTCATAAGACAGAgattacttttcttctttcttcttcattataTAGGAGAAACTTTTCAAGAACTG-------------TCTGAAATCTCTTCCAGTTTGGCATACACAATGGATAATTAATTATAGATTG-----GTgatagat-----------aaatacatacataagcaGCATTTTCTTTGCAGAATTTTGTTGTGAAGTTTCTTGAAATACATAAATCTTATTAGTTTTTGTATATCGAGACTATAGGTTTTGAAGCTCCATGGCTACTGACAACTTGGATTATGCTTATATTCACTTTTACATCCACAAAAGTATGAAATCTATACAAAAATTTGACTACAAGGCAATTCAAATTATTCAAAGGTTTGTCTCTGT-TATGATTAGTGTTTACCAGATAATAGCAAGTCCAACTGAAACTCTTTCAAGTgccacaa-----aatttaaagaaaccaTGAATTTGCAACCAAATGTTTGCATAAAAGAACT------TCACTGTGTTTATGTTGAGAGACTACTTCTATCTCAAATGTTCTTTTCTTATATATATACTAAGTCATTCAAATACCAGTATGTAAGTTGAATTTGTTTATGATCAGTATAAACAAATGTGCTGCAAAGTGA-GCATTTGG-GGAAGTCATCAAATGTTAACCTCAACATTTTAGCAAACACATTTCGATATTTTTTATTGTCGTTGCAATCTTTGCTGTAGAGATGGACTAAGGTTAtgcccttttcttttcttacaatCTTCGactcaggaaaaaggaaagataattaATGCTTGGTATAGTTTTGGGAATGCTATCAGCTTTTAGCAGACTTATTAAAGTATATTTGGTGTTTAAAAACATACTGCATGTTTTAACTGTCTGTCTATTGAAACTCTCATGGGTTCATGAGGTCATATAAACATGAGAGGATGTAAATATTCTGTGAGAatcaaagtgaagaaaatgaagaagatcAAAGTGCATTAGTTTACAGCTTTCATGGAATGTGAAGCcagaatttgacttttttctctgaTGATACTAACCATACACTTCGCAGGCTAATGCATGTGTGTTGG--------TAATA--GTTACCTTACTGAATTGTTCTGCCACTCTTACATTTCCCtaaactgaaagagaaagaattacAACTGGAATAAAC--------TTGGAATATTGGTCTAACCTAGA--AAATATC----CATTAAGCGTTTGTGTTGAGTGGGGAAGGAACgatgaagaaataacaaagaaaattcagCATTGATAGTTGCAGGTTGGTATATATTTTCCACAAAAGGAGTGGAATGTAATCGTGAAATCAGTATAAGTTATGGAACTATAACTGAGCAGGATATTCAAAAGGTTGTAAATTTGATACGagatttagaaatatttctgGAAGAAATCCAAACA

a score=80995
s chr3           150194089 5146 + 160039680 [encoded data, 5774 characters]
s HiC_scaffold_1 136777640 5023 + 233722169 [encoded data, 5774 characters]

a score=18565
s chr3           150200092 788 + 160039680 TGTAATCTCTAATATTATGAATTGTCTTAAAGGATAAAATTACCCTGTACAAAGTTGAATAATTAATGTGTATTTAGATAAAGTAAATTTCTAATGTGAGTCCATATTTTGAAA-GTATGTTTCAGCAGTTTGAGGGTATATGTG----GCTTTAAAATTGACATCCTACAGTTCTATTTTCAGTGTCTTTCTGACAGTGTCTATCTTTATTTATAAAGTGGACAAGAAAACC-CACTGTAGAGAGCTGTCTAACAGCCCATTAAGCCAGAGCTCTTCCACTTGCCATCACTGACTCTTTGAATCTGATGTGGC--ATACTGTGGCGGGCTTCACTGGAAAAAAAAAATGAAGTTCAAAAACAAACAGTATTTATTCACATATTT---TGTG---TTTGGTATGCATTCTGTTCAGAACTAAGTTCTGAGCAGCAGAGAACAAACTTTAAAAACAACAACAAAAAATAACAACAAAAAAATAGATGTGTTTTTGATCACTGGCTTCAG------CCAAACTGTTAGCTTGGGAAAAAGTAGAACTGATAACTTACGGCTCTTAAGTTTGGTGTAGTGGAACTAGTAGAATGCTAAAATCCCACTGGAATTTACAAGTTCTATCTTGAATGTAAAAGAGAAATATTCTGTGTTGTTAAATTGAATAAAAATAAATTAA-CTAGTTCT------------------------GCATGAAAAAGAGT-----------------------------------------TACAACTTCAGTCTTTAAGAATCCATTTCTCATG-GAGGAATAGAAGTCACTGCCTTCTCTGATCCTAGCAGACATCTTTATTGTGAATTCTACACCAATACTCAGCATA
s HiC_scaffold_1 136782609 819 + 233722169 TGTTATATCT--TagtgtaaattattttaaaaaatgaaataatcctCAGGATAGTTGATGAGTGGTTGCATGAGTAGATCAAGAGAAGTAGAAATGAtataaaagactttaaaatatgtatcttgGATGTAAGTGGAGAAATGTACCCAGCATTACAAGTGCAACTGTGAAATGCTGTTTCCC-TCTCTTCCCAACAGTATCtatcaatatttataaaatggacAGGAAAATCTCTCTACAGATAGCTGTCTAACAGCCCATTAAACCAGAGCTGCTCCATTTGCGATCACTGACTCTTTGAAACTGATGTGGCCTAGACTGTGGAGACCTTCAGTGGAGA---------AAGTTCAAAAGcaaacagtattt-tttatttatttatctgcgCATTTTGCTATTCATGCTATTCCGAATGAGGTTCtgtgcagaagaaaagaaattttaa-----------------------caaaaagTAGGTTTCTTTTTGATTACCGGCTTCAGCCCACACCACACTG---GTTTTAG--ACAGTTAGGTTGAGAAGCCGCAGTTCATA------GTGTGGGTTTACCTGGAGACTCTCTGATTCTCACTAGAGTTTAAATGTTTTACCTGAAATGTAA---AGAAGTATTCTGTGTTGTTGAACTGAAAATCAGTAAACAAAGCCAGCTCTATTGGGTAAAAGTCAAGTAGAAacacatgtaaaatatttaaaaatatacattttagttGCGTAAATAATTctgttaaaatacaaaaacagtatTTCAGTATCCCTTTGTTCTATTAGGGACTGATATCATTATGTTCAATTA------CAGACAGCTGTACTCTCTATTCTACTCTAATGACCAGCATA

a score=35701
s chr3           150204120 1511 + 160039680 CTCTGAAGTCTTATCCTCAGAGTTCTG-------ATATACACA-TAGAAAAGAAACAAGGACCCTATTGTTTTTCTTGCATATGACACACTTCCTATTTATATCTGAGTACAGCTTTGGATCTTCTAATGCTT---TTTCAGTG---------------TGTGAGATTTA-------------TAAACACAATTGCCCAATGTGCTATGGTGAAATTGTCACCTTTTCCAATGGATGACACGTTTATTATATCTCAGAACATAAATTTACGAAAGTAAAATATCATGTAAGTGAATGATATCCACCATTTTAAGATGG-GACTAT---------ATTTTTAAGGGAACATATGTTTTAATTAATTAGTTCATTTGTTATTGATGCTAAGTATTAAAACTGG-GGGAAATGCATTGCAGGTAAGAGCTCTATCACTGACCTGT-CCTCCAAAATCCGTAGTGAAGAGTCTAGATCCTAAGAGAATCAGTCTAGGAGAACCAA-----------------------ATATATTTGT---CTCAGGACAAGG------TATACAGTACTGCTGAGTTGCCTAAGACAAAAAACTATTGGGTGAACCAATTTTGTTGACTTTTGGTGATATTG-ATGCTATTTTTCACATATTAGGTACCTGTTGGTAGAATAAAAGTTTGCAGCAA-------CCT-----------AAGCTGTAAATTGCTGCA-CAGTAGGCACTCTGTCAAATGGGAATAA-----TCCTCATTAGTTTTCAACTCATATTTTATTTCAATAATAAGATTTAAGATTTCAAACTCTTTATTTAAAGTTCTAGTT-TTTGCTATCTCTGCCTTTTATAATC-TTATTTTCCATGTCAATATTTGCCTGTGATGAACTATTCTGAAAGTAATTATACAGCTATGAATTACTTTTCTAGAAACGTGTTATACATATACAACAAGAAAACTCAAACACAAAGACACTTCTAAGATGTCTTAGTGTCTGCAAGCTTTCAAAACTTTAT-TTAAATTCTGAATTAAATATTGGTAATGGTTATAGGTGACATAAAACATTAAAATGGGCATTTATGCATAAACAGTCTTATTATCA--GGCATATTTCTTCATATAATTTAATAATTACTCTTCAAAATCATAAAGGAATATTTATGCAAGTGCAATGAGGGC-TTTGAGCCCCATATCATCCATTCTCATGAATATTTATTAACTCAAAGATTTGAACCAACACACCATCCCCTTTTTTCTCCTCTTTTTAAATGTGGAATGCAAGGGCATTCTACTTGAAATTAACATTTGC-ACAATGTCATGATTGAACGTTTACGTGAA-AAAAGTCATGAAAGTCATTGTCTTATTTTCCTGACACTCGAGGTTGGCAACATGTTCTGTATCCCAGATCATAAAACTGTTTAGAAACCCA--AGCTCTTCCTGTGTAAATTACCATTATTTCCTACTCTGCCACAAATATTCCTAAAGAGAATAAAAGGAAAATCTCAAGCCATGGGCAAACTGACATTCTGAAGGCATCACAACAGAAAAAAAAGTTCTTAAATTCTTCTAGTCTATTCCCAAAATTTCTGCCTAAGGCAAGT-AAAATACAGATGGTT
s HiC_scaffold_1 136784878 1561 + 233722169 CTCTTAAATCCTACATTTAGAGTTTTACTCACAAATGTaaacaacaaacaagcaaaaagattCTCACTGGTTTTGTTGCATATTTTATACTTAGCATTTATCTCTGCATGTATCTTTGGGTCttttaatatttgcatttcaGATAAGCCCAGGATAAATTATGAGACTTAAGACTTTAAATTATCAACACAATAGTTTAATGTTCCAGTTTTGAACTAATATATTCCTGATTAGATTACACGTTTGTTATGTTT-AGAACACAAATCTAC-----CAGAATAttatgataatatataatttccACCATTAAAAATTAGTGACCATGCATTGTAAACTTGTAAGTGGA----------GActgattgattttttaatttttgtcactGAGTTTCAAGTCTATCATGTCTTGGGTTCTAGGCATGAacgctaccactgagctataccctcaagAACCATGGTAAAGATTC---ATAATAGCAGAACTGGTTAAgcatttccaggttttttttattctttatgttttatgcAATTGTAAATTCACAGTGAGGAGTCCTTATGAAAtattactgaaatatttaaactaaaaGAATTTTTGGT-AACCAATTTAGTTTACCTTTGGT-ATATCATATGTTATTCTCCAGGTAACATTGGCCTATTGATGGGCTAA---CTTATACCAAATCACTTCCTTGGAATTGGGCAGATTTTAAGGTATTCCAATACAAGGTCCCAGATCAAATGGGATAGAACTTTCCCACATTAAATCTAAATTGATACTAtagtgaaataaaagaatttaagatTTCCAACTCTTAATTTCaagttttttcccttttctagcTCTGTAATTTATAATCATGGTTTTCCATGTCAATATTAGTATATGATGAAGTATTCTGATAGGAGTTATGCAGACATAAATTCCCTTTTCAGAAATGTGTCATA-------------GTGATTTTTGCA-------ATTTCC---ATGTTCcaatatctttaaattttcaaacctttAGATTAAATTTTGACTTAACAATTACTACAGGCTAGAGGTAACATTAGACTATCAGATGGGCATACATA---AAAAAGTCTTGGCATTAAGAGCATATTTCTTCACTTACTTTAATGATTATTCATGGAAATCAtaagagaatatttaaataaacaaagccAGTGCATTTGAGTTCTGTATCATCCATTCTAATGAATATGCATTGATTCAAAGGTTTGAACAATCACa----tcctttctttctcatttttc---atatgAAAAGCAAGGGcattctgtttaaaaataacattaataacaaCGTCATGATTGAGTATTTAAATGAACAGAAGTTGGGAAAATCATTTCCTCTTTTGTCTGG-GCTGTAGCTTGGCAATGTAGCATGTATCTTGAAGAACAAAAACTGCTAAAAACTCATCAAATTCTTCtatata-------ataaattcattttcattgatGAAAATTTTAGAAGTGAGAAACAGG-TAATCTCAAGTCATTGACAAGCTAATAT--TAACTGcaacaaatcaaatgaaaaaatccTTAAACTGTTC-AGTCCATTCAATAAAACTCTGCCTGCGGCATGTAAAAATACGGATGGTT

a score=26611
s chr3           150214598 962 + 160039680 TGTGCTGGACATTTATTTGGAAATTTGAAATTTTCATGTTACC--AGTTGACACAGACAAATTCCACATTATATCCATGTAAGTTATTAAATACTAAATGATAAAAGATACAAATGAATATTCAAATAATT-------------TGAAATAAAAATAGAGAAATTGAAC--TCAAAAGTTTGTTTTAGTTAGTCATATTAAATAATACAAAATTAAAAACACAAAAAAATTTACTATTTTCATGATCTTGACCTATTCAACATC-TAAAACAGAATGCTCCTGTCTGG-TGCCTGAGAATATAACATAGAGGTTGAAAGTGAAATCGTACAGAAAACCCTACAACTGAGAGATAATTAGTGTGTTGGCAAAACTGTCAGCTAAGATTTTTTTATCAGTGGAAAATAAATGAAGGTAGATTTGAGAGATATGCAAATATAATTTGGTGTCACAATACTTATATGAATATCCTTTATCTTACATTTTTGAGAAACTAATAAAAGTAGT---TTTAATTTGCTACTTGTTCTTGATAAATGGAGATAAAAAGTACTCATATGAAGAAA-TCattattttatttaaatatataataGATGTATAGTTGTAACAAATACCATAGCAATGTGCCTTAC--AGTATTCTATCAGTCCAGAGCTCATCAAGAACGTTTGGTTTATCTAAAGCAAAGGACCTATGGAACATACTTAAGTTCC---TTGACAAAGGTTTTGGGCATGAGAACATGAAGATGAGTCATGTGCCTAGGGTTGAAAGTTTGGACAACAGGACttttttttttttttttttttGCTAACTGAATGGTTATGGTCCAAGCAAGCAATCACTAAC--ACATAAAAAAATCCAGAATGTGCAACTTAAGTCCCTTTGCACTGACTTTATAA----ATATCCAACAATTACTGCTAGCTTTTCTCTCTCTAGAAAGCTTTTAAAAAAATTCTACAATTTTCAAAATAATTAGTATTGCAGGTAT
s HiC_scaffold_1 136792466 937 + 233722169 TATGTTGGGCATCTATTGAGTCACTTACAATTCCTACGTTATATAAATTATTACAGACAT-----------TATTCAAG-AAGTGTTTAGGTA---GAcactaaaaagcaaaaattatttttcaacttgCTGCAAAACGTCTGATAAAATTAAACTACAAAACCAGAAAAGTCCAAAATTCATTATGCTTAGCTATCCAAAATAATGGGAAGTGAAAAAAACCTTAAA-----------TCAT-----TCACTTGTTCagcattgtaaaatattttatacctgTCAGGCTGCCTGAcaatgaggcagaaagattgttcATGGAATCTTTCTGAAAAC--TACAACAGAGAGCTAATTAGTGTGTTGGCAAAACTGTCAGCTAAGA-TTTTttatcagtgaaaaataaatgaaggtaGATTTTAGAGATATATGAATATAATTCACTGTCACAATACTCATA--AATATCCTTTCTCTCACGCTTTTGAGAAACTAATAAAAGTTGTTGGTTtaatttgccacttgtatttgaTAAATGGAGATAAAAAGTGCTCATATAAAGGGattcattctttta-ttaaatgtataatataCACCTAGTTACAGCAAATAGCCta--aatgttatatataaaatataatatctaTTCAGAGAACATAAACTGTGCTTGATTGCTCTACGTAGAAGGACTTAAG----AGATTTAAATTTCTGATTGATAAAGCTGTTGAACAGGAAGAATAGAAGATTAAGCACATGTGTGAAGCTGGGAATATCAATTGCAGGGA-----------ATTTCTCTTGCTAATCGAATGTT--TTGCTTGGGCACATGGTGACTAACAAACATATGAAGACCCTGAGGACATAGCTAAAGCCATTCAACTCTGACCTTGTCAAAGCACTTTCAGTGATTACTGCTAGCCTT--TCACTCTGGATAGATTCCTAAACATCTAAAGATTCTTTTAAAT-ATGAATACTTCAGGTGT

a score=70404
s chr3           150227986 3232 + 160039680 TATGAAATGATTGCTTATCTAATTATAGATGTGtttatttttctatttattttatt-aaaatGTAATGCACTAATAT--TTCTCCTTAAAAATATACAAGATTTGGTTTCATTGATACAAACCAAAA----TAAATTTTCTCTCTGCAGCATGATTTCTTAGT----------------TACTAAACATGCTAGAACACAAATTTGTTAGGAATTGTATGAACAATTTCTGAATGCATGA-CACATACCAGC-CTCAAATCCCGTGGTAGTAAGACTTATGAATTGAATGTGTAAGGCATGCAAGCTTTATTCTGTGTTTACCATT-CTATTAGTTAGTAATTATTAAACTCA------TTACATGAACAATTGTATTTTTTCCTTAGGCATTCTTTT------GGTAAATTCTGAAATT-ATAAAATA-ATGAAATAATTAAGTAATTTGAAATGCAACATGAGTTTCTTTTCCTTTTAATTTTTGTACTTGACATTCTAATTACACCAAAATAAAATAATCTATTAATTTTACACTAAATGTTATT-AACAGTATGAAAGTCCTCAAAGAGCCTCCCAGAAAGCAGCCAGCACATAAAATAATAAGATATAAATTGGTGCTGACCTACA-----AATTTGAACACAGAAGG-TCTGCAGAATTTCTA-TGTTATTTGAAGGTAAAACTTTTCCTTGAGATTATTTGAAAGAATTGCAAGGACACTGC--TTTTTTCTTCCTATTTTTTCCACTACCCTTCAACTACATATGTTTCTAAGGACACACTCAGCGA---------GGCCTTATTCATTGTAAAGTTGGAAGTGATTTGCCAATGATTGGATGTGCTAATGTTACATAGCTTGGATTTTATATCACGAAATGCATTTGGAATG----TAAACAAAGCAGATATATGGTCAAAGACTATTGAGGGCACAAATCATTTTAAAATG------ATTAAAAGTATTTAGCCATCTTGCAGGTTTTG------------TTCTATAAT-------------------AAGCAAGTG-------------TTTATGCAA---------ATGTAAT----------TCAACATTAAT---------------------------AAACTGTTTGGA------------------------TGATCATTGCTGTAATGATTTTTCTCTGAGCTGGTCAAAAGTATGTTGTGTACTA-ACACTTT------------------------------------GCAT----------TAATTTGCCTGCATCTAAAGGATTTCTTTCTA-------CTTCCCATTTTC------ATTCACTCTAGGC--------------------CTGATGGAGATACTCTTTACATT----AGCATCTAAAGTCA-----TCTT---------------------------TCATTTATCTAGAGTATTC------TATAATATTTC--TAGAAAATCTTGCAACTTAAAAACATAAATGAGAATTATTTTAAGTCTTGAACACAGCTGAAATGTGAAAGATTGCT--ATTTGATGGTTGTGTCTCAACCTGCTCCTAAAGTTGAAGAAAACAGACAAAAGAGTGTGGTG-GGAAACA---CGGAGAACTTATAAATA-GTAATTACATTTTTTTACATTTTGATATACAAAATATTTGCTGTTCCTTTGTTCAGGAAATCGTCACCTTATGGCTCTCTGTATTTTATACAGACTTGG-GTGCTGTGCTCTGGTGAAGTTTTACTTAAGAGGAGAT--ATTCTTCCGACCTGGTTTTACCATGACAATTAAACAGCG----CTCAAGTAGGAAGGCACCTATTTGCCACTGAAATAAAG-------------AAGTGTG-------GTTCCATGCCT-----------------GAACATCTGTCATTTCCCAGTTCTG--CAGACAGGAGTATACCAGGATAACTGTTGACAACCATGGTCACTCCCTTGCCCAGCAGACTCATGG----------CTTCACAGAATCAGCTTGTAGCCTTG-----AGAAAACTGGCATCATTCAAACCCAGTGATAGCCAAGAGGGCAGCT--GTGGTCCTGGGTGTTTTTCAAAAAAGCTACACCTTAAATGACAGGTGAAGAAAGTAAGCTGGTCAGAGTAATTCTACAAATGAATGGTGTGTAAGA-AGCTTGCATTCAAATGAGCCTCTGTTAACATGAGCTCATGAGTGTGGTAGATGGTGTTT-CCAAGTCACATCAAGGGATTTGCAAAGTGTAAAACTTCTCCAACACA---CTTGGTACT-ACTCCCTATATATTTATGTATATCTCATATATGAGTTTTAGCAGGAAAACATCTTGAAAGGATCTTTGGAATGAAAAGTATATTCATAACATGAATTAAACAAGAGCT-TGTTTGATCTTTCCTGGAGAAAAGTACATTTACATTTTCAAATGTTATCGTTTATGTGAGTGCCAGAATTTGTGTTAGACATTGTAGAAAAGATCATGCTTGCTTGCCAGAGAGCATAGTTTGGCTATGAGTAAAGAAATTTATAAATCCTTTGTGG-ACACA-TTTCTAGTCTTCTTTGAGTCTTTGAATTCCCTGACAA--TTACAAGTATTGAAACATTACCTTGACAGTCATGCCTATGatttataagaaaataaaatcattatttaaagtat----------tat---------------attatttttcatacatatatatgatattat-------------tttgatattattattCCCATCATATATG-TTTACTCTTTATAAATAA------ATACTCAGGTACACAAATCTTGAAAACCTGGATATTATATCTAATGTC----TATTAAAAGATTTAAGAAGTGTAAGAGGCCTTTTATTAAGAAAAGCTGAACCATAAACAATTGTTTTACTAAAACATTTATTTTTATCGTT-TTAAATGAAAAGATAGTTATTTCATTTTTGTGTAGTGAAATAATTACCTACACGTGAAGGTATTTTCTAA-----ATGTGAATAAACTTTACATACCTTT-TAAAAATTCAGCTCACATCAAAAAAAGCTAAATAACATTCAGATTTCTGTGAGTTCTCTCCATGACTTTTACAAGCTTAAAGTTTGGCCCAATGATTTAGAGTTAATAATTTAACATGTTAATAATATTTTATATGTGGATTGTTGAACATCAGCTTGGAGattatttaaatgaatatttaatttttattCACCTTGCCAGAAGACAAAGCATTTGTTTAATTGCCTGATAAAGATGAAAGAAGATCAG-TACAAGTGTTAATG-TAGAAAAAAGTTGTGAAATAAAATAGACATATGAATCCTACATATTGGGC-----AACAAATAAATATTTGTC--ATTCGTCACAATAAACTGTATAGTGCACGTTCTTATTTTCTACTAGGAAA-AACTGCATCTATAGGAGAGATGCAGCCTTTCTAAACGTTCATTCTAATTTGACCCTGTTT----TTTTGAATCTCTAAAATAACTTTATGAATATTTT-----ATTAGTCTAAGACTGTGCACTGAATGGATACCTGACAAATAATACTTTTTTGTATATTCCTTTTGCACTTACTGCCAAGAAAACACTCCAGAGAAG-TTGCCATTAAGGTAGGAT
s HiC_scaffold_1 136805967 3582 + 233722169 TATAAGCTGATT--TTATGAAACCAtag------ctttttttctgttcattttatttaaaatataacatgtTAAGATCATGTccctttaaaatacttttgagtTTTCTGTGTTGATATAAACTAAGACGTCTGATCATTTCTTCCTTAATATGATTATGTTGcaatcaggatttaaaagtccaAAAGATGTCAGAACATACATTAGATAGGTTTTGAATGAATGATTAATGAATACATAAATTCATATTAACACACACACCTAGCAGTAGCAGGGCATTTAAATAGAATATGTAGTCCATGCAAGCTTTTTGCCAGGTATACAATTTCTATTAgtcatttattcttaaatttagaAATCCTCTACttagtgttttatgtttttttaaaacagttttatcAGGTAGATAACTTTTGATTTTCAAAAAGTACATATACTAGTTAATTGATTTGGTAT-----ATAAGAatggtttcctttttattttta------gcgTTCTTATTATACCAAAATATAATAATTCATTAATTTCATACCAAATGATATTCAACTATAAGACAATCCTCAGAGAACCTAGTATATGTCAGTGGATACATAAGATGCT----TACAAATTT-TATAGTTGTACGTAGGCAATGGTAACACAAAGGGATCATTGGAATTTTTAATATGATGTACAAGTAa--cttttccatttgaaaatatgaaagaaatagaaggGTACTGAGgttatttcatgattttctttttgcaaTGTTCCAACTGCATCCTTGCCTGATGATACATCCAAAGGAAGcaatttgttcattttccttgCAAAGATCCAGGTGA--------------------CTGTTGATAGGTAATTCagaatttatgtttcaaaatgtTGTAGAAAGGAAATTAACTAAAATGTACACATGATCAAGCA-TATTATGAAAGTTCATGTTTCTGTGATGGTCCACATCAAATGTCTATGGCCAAATTGCTGGATGTGAGTGgtgtacatgcttgtaatcccagcactcaggaggctggggcaggagaactGCCAAGACTTTGAAGCAAGCCTGAGATACATAATGATTTCAAGACCAACAttaattacatagcaagaccctgtctcaaacaaaaaagatgtggagAAGATCAAAGTAGAAACAAACCATGAACATAGTTAAAGTTAGTAGCTGGCAAACTTATAGAAATTAT-TAATGTACAATATACTTTTGACAGTAAAATATAAGTACAATAATGATCATCACAACATGGTAGCAGTGTAACTCATGTTTACATAAACATTTACTTATTAGAATGCAAATACCATATTTGACAGTAAACATTCTAGTCATTTTTGGGACCAATATGAACTGATGCCAcgaatgtttccatttttaaacataACAAATTACTATGTCTTCAAATACTTCAACAAAGAATTAATGGATCACCCAAAAACAATATTCACTGTTTCTGGTATTTCCATAGaaattctagaaactgaaaagcaGACAT------TGTTTAAAGCCTTGAACACAACTGAGATGAGAGAAaatggttggtttggtgatcatgtcTCAAGCTGTCCCTAAAGTTGTAGAAAACGGA-AACAGAATGAGTTGTGGGAATATACCCGAGACACTATAAATAAGTAattgtatttttc-acattttgatcTACAAAGT-TTTATCGTTCCTTTTCTCAGCCAGAATGCACTTTACAGCTTATTGTATTTTACACTGACTTTGTGTACTTTGATCTGTTGAATTTACACTTAAAAACATATGTATGCTTTACCACTGGCTTTTCCAGACCAATTAATCAACAAAATCTGACCCAGAGAGGGACTT-TTGGTCCTCTAAATAAGGCgacaaattttaaaactgtgaaataaTGTGATATTCCTTAAGGAATTCTCCTTGAGAACATCTATCATTTCACAAATCCGTTCAGATAAGCGCACATGGAGACATTTGATGATCCTGACCATCAAACCCTCAC-----AGTCTGCTGGGCTTTACTTTCTTGTCAGAACCAATCAATGGGCTTTGAAACAAAAACTCAGCAGTAGTGAgattgagagaaaggaaaaaggggatTTTTGTGGTCCAGGATGCATTTCAATGAGCCTAGACTCTAAGTGATAGATGAGGAATTAAAGCTGCTCAGTATAATTCTACAAATGA--GGTGTGGGAGAGAGGTTTCATTCAAATGAGTCCCACTTCTCACAGGCTTGAGACTCTTCCTGATGAGATTCGCTGATTCTCATAAAAGGAAT-ATACAGTGTAAAACTTCCCCAGTGCAGTTTTTCACACTCACTCtctatatgtttatgtatatgtgATATATGAATTCTATAAGGAAAACATCTTGAAAGAGTATTTGAACTGAAAAGTATATTCAGAACATGAATTAAACAAGAGTTCTGTTTGATCTTTCCTTGGGAGAAGtgcatttacattttcaaatgtgaTCATTTATTTAAGTGCCTTAGTTTGTGTTAGACATTGCAGAAAAGATTACACTTCTTTGCCAGGGTGCAGACTTTGGCCACAAGTGAATAGATTCTCAGACAGATTTTAGCACACAGTTTTTATTATTCAATGAAACTTCTAATTCCTTGTAAATGTTGTAATTATTAGAACATGGTTTTGATGAACATCTCCAGGACTT---AAAGTGTAAATCAGTTTTACAAAGTGTGGGTTAATGCTATCATCAAATtgcttcaattattttaaatgaatatccATGATCTGATTCtttgtcatttgttttatttttttatgatcaTCACACTTGAATTACTCTTTGTAAAtaagtgtgtgtatgcatgtgaaCTATTTTTACAA--CAGAAAAATACATCTAATGACTGAGTATTTAAAGTTCAAAGAAG-ATAAGAAGCC--TTACTAAGAGAAACTAAAATGTGAAGACT--------TAGaaaattggtttttatttttggcaaattAATAGACTGTTGTCTCATGTTTGCATAATGAAATAATTGCTCACTCTTG---------TTTAACTGCTGTGTGAATGAACTCTATACACTTTtctaaaaattcaatttatataacagaaaacaaaatgatactgaGG-TTCTGTGACTTCTCTTGGTGACTTTTACAAGCTGAAAGTTGTGTCTTGTGATTTatgtttaataatttaatatattaataatattttagaagTGGATTGTTGAACAT-AGCATGgagattatttaaataaatatttaatttttattcaccTTGCCAGAAGACAGAATGCATGTTTAATTGCCCGATAA----GTGAAAAGATCAGTTAAAAATGGagatgttaaaaaaaagttttaaaataaaagcgaTACACAGATCTTAATTTTGGGgcttcaaaatgaataaaaatttgatgaatatttcatattataaaatacagttcaagt--ttatttttcataaagaagTAATTGTATCTATCT--GTGTTACATACTCTCAAAA---------TAATCTgcacctgttttttattttgaatatctaAGAcaatattatgaatattttatataatgagtCTAGTGTCCTACATAGAATGGATACCTGATG---AATACTTCTTTTCACATG-TTTTTCCACTAGTCACCTAAAATACACTCTAGAGAAACCTCCCAGGAAGACAGGAT

a score=5362
s chr3           150231278 651 + 160039680 ATATTTTAATACTAATATGGAAAGAAGGTGAAATTCAAGGGGGAACTAGAGTCTGAACTACACTCACCATATTTATGTATACGGGATGATGTTTTTT--CTCTTGGCAGAAACTCAGTGATTGAGGGGACAATGTATCACGCAGCTACATACATGCA--CACCAGGACATCATGTGAAACAGGAGCATTGCGTGTTATGGAAGCACATGCAGGG--------------CACTTAAAGCAATGTACTCTTACACACAAAAATTAAGTAACTGCCACTCAAGCTGTCTGAATTCTACACGACACAATA-ACACTACTCTA----TGTAGCTCATAATGAGCTAAA------GATGAGAGTGGAGATCGGGACAACTACTCCAT----AGAATTAGCAAATCAAG--ACAATATATTCCCCAGTGTATATTGTCATTTACACTTT---TCTCTGTGTGTTTTTCTTTCCTATTCTTGCTGTTTAAGCTTTAAAAGTC-----CACAGTGTGTG-TAAGGGCA-----TAACTGAAGACTACCATTGCCAAATCCCTTATTTCCATCCCTGGCC--TAATCCATCTTTTCATGCCCCAATTTTGTCAAGAGTTCATCTC-CAAAATCCAATCCTTTGTATGAAAGATGTAGTTTACATAGTAATAACTTTGAATATTTATTAGTAACAAAGCCTATCCTACAAATAG
s HiC_scaffold_1 136809661 662 + 233722169 ATATTTTAATACTAATATGCAAAGAAGGTGAAATGCATGCAGGCACCAGAGTTTGAAATAT--------TGGTTATTTCTA-------ATATTCTTTGGTGCATAGGAGCAATGTAGAGA---AGCAGGCATCTTAT-AGACAAGTACATACACATATCCACCAGGGGCTTGTGCG-GACAGGAA----GCCAGCTGTAGGAGTGC---TAGAGACCCCTCGCACCCTCAGTTAAAATCATGCACTTTTGCAAGCTGGAATTCTTTGGTTCTTGCTCA--CATGCAGAATTGTATTCTCCAGAAAAGACCCTGTCATAGACCTACAGTGTCTCATGTACCCAAAAGATTGGTGAGAGTTGACA----GGCAAGTGCTACCTTTTGAGAAATTGCACATGAAGTTGTAGCGGGTCCTTTCCTGTCTGTT-TCACctgccttctttatttctttatgctTTTC--CCCCATTCACATCTTCTTAGCTCTGAGAGCCAAACTTAAATTAAATGATGAGGGCCCAATTTGACTGAAGCATATTACTGTC---TTTTTGGTGTCTTTGCCAGGCCTGTGATGCACTTTATCATG--GCAATCTTGTCCTGCTTCCTTTTCATCATGTACATTATTTTGTACATATGACTTCATTTAGATGGTTtcaattttgaagacataaatTTCAAGAAGCCTATCCTAGTAGTAG

a score=38265
s chr3           150232704 1623 + 160039680 tgtgtgtgtgtgtgtAAATGTAGAAAAATATTGTCAAATTATTAGCCTGAAATTATG---CCTGTAACCTCACCTTGAATATTAACTGATTGGATAGAACTG-TTTTATCGTGTTCAGTTGAGTTTCCGACAA-ATGTAGTTTCA---------------------------GTAATTCAGTAGTTTCAGTGAACTCTGT--ATTTG-----------------ATGAGCAGAAAAACCTATAGCTGTAAGAATGA-GAGCAGAGTCATTATTTCATGTCATAAATCATTCGCTTGAGTTGCATAGAGCTACTTTTGTGTTCATTTCTAAAAAATGTACAATTATACTTCTACTAAAAGTGAAAT-----CTTTTTGAAT----TACATGCTTCCCCGTGGGCAAAA-CACAAAGAACAATTTCATGTAAAATGTTTACAGCCAGATGGACTGGTAGAGGATTATCTTTTCCCAGTTCAATCTAAGTCCCGAACTCCCTTGAAGCTTTCACAGCAATATGTCATGTGATGTTTGAGTTAGCTCTTTGAGCTACTTCATGCCTGGAAACATGTCCAGTTAGGGTTTTTGTATCAGCCCTCCAGAGTAATTGTTATTTTTCAGAATCCCCAAAAGAATAAGAAATTGTCATGTCAGTTGTCATTGGTCTTTTTTGTATGTAAGT---GAAAGACAATTGAGGTTCCACAGTGAGAGGCCCTGTTAAAATTTTATGGTAGGATCATTGGCTGCttttttttttttttttttttttATTCTAAACAGAAATGTGAACCACTGGCAAGTGAGCCAAGAGTTTCAAAGTTTGATCCCAGAGCTGTCATTAATTTCCTTTGCTATAAAAAACATGTCACCCGAGTCTTGTCTTCTTCGCTCTTCTTATCAGAACTACCATAAGCTGATAATACTCACTGACTCTTAAGCAGTGAACTAGCATGCATTTTAA--TAGAAGATGTGTGCTTAAAATGTCTG-GGAAAATTGCCTAACTTTTT--AATATATACTACAGAAATGTATTAGATGAACTCATCATTTTTTTGAT-AGATGGTGTA-TACATCTATCACAGAAGATA---TTTTTATTCATGGGATAAAAGGAAGAATAAAGGTATTTTCTTTTGGAGTTTCTTAGCATTCTACACAAAAATTTAGGAATAAAACTGGAGACTCACGTGTTTGTTAAACCAATCTGGATAAGTGTGAAATTGACATTTCATAAAATAAA-TTGCTATTATTATTCTCATATGATTTCCTAAAATTGGATGC-TTTGTGCATTTAATGAAGAGTGGAAGCTCCAGTGGTT--AAATCTATTTAAATGCAAAGAAAATAAATAATTCTAACAAAGTTAACACAAGCACAGAGAATGACAACAGAACACAATATTTGAAAATATTAATTGCATAAGGGGGTCTCAAAATTCATTAAGCAACACTATTGTAGCTTGGTCAAGGGTGTATTGGACTTTTAGAAATGTACATTATCCAATATCTTCTACAATAACTCCT-CTAAGTATCTTGAGAATTCAAACTATTCCTCATGTGACATTCATTCTTTTATAGCTTA-AGCTAAAGTGAGT-------------------ACAAAGAAATTACCAAATTTCAAGGAACATTATGTTAGTGCTGATATACCATTATATAAAATACTCATTGAGCTAGAAACATTTTGTGCTGCTAAATAATC
s HiC_scaffold_1 136810366 1631 + 233722169 TGTATCTGGGTgcaaaaatggggaaaaatcgTTTTACCTTATTGGACTGAATTAATGATCTCTGTAGCCTCAAGTACAATTTTCTCTGATTGGgcagaaataattttatcttattCAGTTTAGTTGT--ACAAGATTTAGTCTCGAGCTATGCAAACCTTACGATTTTGTAGGTAATAATGTCATCTCTTTTACTCTTGTTAATTTacagctttttaaattaaaatgaatagattTGTCTATACTCATGAAAACAAAGGGAATAGCTATCTTTAAGTAGTTTAAGTTATTC---TAAG---Catctaggtttttattttttcttttctaaaaa---catAAATATCCTACT--TAGGAGTGAAATACcgttttcttaaataaaatacacattgctCTATGgaagaattcataaataaaaactcCATATACACTATTTTTAAACAGAGAGACTTA-AGAGAATT---TTTCTCCTGTCCCACCAAAGCTTCCAACTCCCTTGAAGCTTTCAAAGCAAGGAGTCATGTGATATTTGCATTCACTCTTTGAGGTGTTTACTGCCTAAGAACTTTCTCACTTAGCATTTATACACAAATGCACCAGACTCAGTCTCAATTCTC----TCTTGAAAACAACGTAAAAGCATTGTTGCATTGTTTATTGGTCTGTCTTGTTCTAAAGGATAAAGAGAGAATTCAAGTGCTA---TGAAAAGAACGACTGAGATCAAAAGCTA-CATAACTGGGCAATATTTTTAGT----------------TAAGCTTATATGTAAACTACTGGTAAGTGAGCCAGGTGTGTTTGAGTCTAAGGACAAAGTTGTCAGTAATTGTATCTGCCACAATGAATGTGTCATCTCAGTCTTATCCACCTCTATC-CCTTATCAGTAATACC-TGAG----TAACACTGA------CCTCAGAGGGAAAATAACAACTATTTCAATGTGGcaaacatacatttaaaatgtcTGAGGACAACTatctaccctttttaaaaaaatgctagaGAAATATAGTCGGTATATACATCATGTTCTAAAGAAAATGGCTTGTTTTAGTTTTCCCAAAAGACAAGGCATATATTtgtgagtttaaa-aaagaactaaaatattaTCCTTCAGA--TTCTTGGCTTTCAACACAAAGATTTAGGCATAAACCT---AACTCCCACA-TTGTTGAACAACTTCTGATCTTTGTGAGATTTGCATCCCATAAAATAACTTTGCTGCTATCATTCTCAAATGATTCCCTAAAACTGGAAGCTTTTGTGCATATATTGAAGAGTGAAAGCTCTTGtgattaaaaatctatttaaatgCAAAGCAAGTAAATAATTCTAGCCATGTTAATATAAAC------AATG----CAAAAGATAACACTTCAAGCCATTGATTGTGTGGAGGGGTCTC-AAATTCATTAGG-----CTTTTG----------------GTATTGGTCCTATAGAACTGTATCTATTCTAATATCTTCCACAATAATTCTTCCTAGGGAATAAAAGAATTCAAGCCATTTCTCCAGTGACATTTACTCCTTTATAGCTTAGAGCCAAAGTGAATTAATTcttcccccccacacacacacacaaaatcaaattTCAAGGAACAGAAGTTTAGTGTTTATATATagtattaaaaaatactttttgagtTAAAGATATTTGTGGTGTTTAAATAATC

a score=28001
s chr3           150235958 2354 + 160039680 CTTTAGTGATGCCAGTTTATAATTATTAGCCTTCCCTCTAGTCCCAGGTTAC--TGGATTTATAAAGGTGAAATAAACAGTCAGGTAC-------CTGTTAAAATGCCATTTCATAAATTTTTTATTAGTGCTAACTTTTAAGATTCTGAAATATTCATTT-CAAAAGTATTCCTACC-ATGTTTTGAAAAATTTAGACTTTATTATGTAGAGA-------GAGGAGGGTAAATTGACACAGTATTTTAGAAGAGAATTTAAAAGGAAAC----CAAGAATGTTGGCAAGGTTCCTG----------------CTCTGGGTCAAAG-ATACGAATCTTTTCTGTGAAAGGAAATGGAGATCAAGCCAGATTCATATTCGAAAGTTCTCATGGAAGAATTATTTAAATTGCCTAAATAGCCAGCAAAAATTGAG-AATGTTACTAAG----------AAAGATATGTAGATTATTATTAATTTGCCACAAGTATGCCTTAATGTTAATTTATCTAATGAGAAAATTGGGCAGTGGCCTGGAAAGCCTGCCATGAATATGTAAGAAAGAAAGAAATATGAGTCTTTTATTTA------------TTAAAATGTCAGCAATTC-CTAAGATTGCACAACAAAATTGAAATTTCCAGATTACAGAAA-ATATTTTCTACAAAGAAAGAAGAATTGTATTTGTGTGGACACATGCTGCATGCGTGCACACATATGTAAATGCACACCCATACACAAGCAATGCACCCTCAGGATAATAGTTGAATATATTAAATTAT--GAGTTTTAAAAGGAATACTACTAATGGTATAATGTTAAG-TGACTTGGCTGTTGTAATAGTTTATTTCAGATTTGTCAAAGACTTTAATGA---TTGTGTCCTGAATTTGCAACTTTAAAAAATAAAAAGCATTGATT----GTTTTTGGAACTGGTTCT-----TCTTACATGAACTTTACTAATCAATTTCT-ATtccctgtgccttggtttccacaggagaagacaaagccattgatgatgaactgcctcccagggatgtgtgtgagcgttagttaatgtttgtaaagcttcaactga-------gaattggggctgcataatGGAACAGAATCTCAGTGTTGCATGAGCATTTCTGTTTTACTCAATGCTCTCCAAGAGGCTTCATGCCAACTGTTAAAGTTTTAGTTGCCAGGATGGGGGGTTTCTCTTTTAATTTTGGAAAGAAAAGTGAGCATTCT-TGAACATCTGGGGCTCACCTTGGCATAATTCCAGCTGCGCGTCTTTGGAATCAAGCACACGA-AGTGTGATGGACAGCAAACACGGAGGAATTCATATCCAATTTTAAGCCTGCTGTTTCAATTCATAATTTAGCTCACATATTAAACCTATTAGGAAAAGCAGAATATCGGTAACACACTTGAGATTTA-TTGAAGTTTTT-ATGTGAGAAGATTTTGCTTCAAATAAAATCTCATTAAATACATGTTATGGGGATTTGGCCAGCA--GAA----------TGGATTCAGGTTTTGGACAGCTCCATCCAGTGTAGTTTTCGGTA--AAGGCCATATC-----CAAGAAATGCATAAGCATCTAAAGCTAACTTTAT-----------AattcatccattcattcattcattcaAATGTATATATTAGAAGGACTtgtgtgtgtctctgtgtatactatgtgtatatgagtgcatgtatgttctcgtttgtgtgaatgtatgtgCTAAAGTCATAATGTGTCAT-------GTGAAGGTCACAGGAAAGTCTCAGGTGTCCTCCACATTGTT-CCATATAGGTTCTCTTGGTGTGTATTCCAGGGTGTTTCCC---TGGCCTGTGAGCTTCTGGAAATAGTCCCGTCACTGCATCTCATTTCCACGTAGAAGGAATGGGGTTACTGATGTTCAGACTCTGCATCCAGATTTTCTATGTGGGTTTGGAGTCTCTTCCTTCAGGTAATCACAGTGGCATTTCAAGAACTTTTACCCAGTGAACCATGTCCCAGAGTGAAGTTCTTGTTTTGAGTCAAATTATACTTGATAGAGCAGAGAGTAAAGGCAATTAAAGTCATGTTGTATACCTATGAGCATCTGGTAGGACCCACCCTCCATGGCC-------TGTCA------------CCCTGTGT-TGTCACCTTGTGTGTGTGTTCTAGTCACTCAGAGCATGTTTTAT----GAATGAGACTCTCAAGTGCATCATATT----CAGACACAGTTGACATTCTCATTTGTATTGATTTTGTGTGTGTG---TGATAACATCAGGCCATTGCAAGCCAATCAGAATTAACTAA--ATTTTATCAACTTCAAGTAAGTAATGTTCTTTTAAAGATCAAAAT-CTTCTAATAGTGGGTTGCATGGTTCATTGACAAGAGTAGATTGATAAGAGTGCTTGTGATATTTTTTCcacactcccaaaatca------aaggaaaggagggagattgtgaagaaat
s HiC_scaffold_1 136814640 2207 + 233722169 CTTAGGCATTGCACGATAGTAATTAGTAACATTCACATTAGGCTTAGTTTGCAATGGCCCTCTAAAGGTGAAAGAAAAAGG-AGGTATTCAAGCTCTATTAAGATAT-------TAACtgttgtataaatatttatctttaaaattttgtattatctatttgaaaaaatatctgtatttatatttgAGGAAA---GGATTTCA--AAGTAGACAATACATTGGGGAGAATACATTGATAcagtctttaagaaaaaaa-----gaagaaatgttgaaaaaatgtttataatttttcctaCCCTTTGATTTACCCCTTTGAGTTATGTTGTAGGAGTCTACTATAAACAAATACTTAGATATTAGGACAGATTTGTATTCAAAGATATTCACtgaaacaatatttaaattg----AATATCTAACAAAAGACGAATAACTCTACATAGTCATGAAATAAaacatctttatatttttatta----------------------tgtaaaattat--gATGA-ACTCTTACACAGTGAACT--------------------------AAAGAAAAAGTCttagttttttaaataatttgggaCTCTTCATAAACCCAACAATTCATTAAGATATTTCACCTGAAATATAATTCCCAGATTATTGAACTATACTTTTACCAAAGACAGAGGAGTTA----------------------------------------AGATGTATTCCTGTTT------------CTCTCCCTAATATTGTTAGCTGTGTCATCTTACAAGGGTTTAAAAAATAGCACTAATGATTTCTTCACCTGAAGATGACTTGGCCACTGCATTATTTTATTCTGGGTGAAACTAATGTTTTCATAAGGTTTGTGCGAAGAGTTTAGAAGTTTGAAAAATG--------TGATTTTCAGTCTTTTG---TGGTTACAATGATTTTGGATTAACTTCTCTAAATAATTTCTTCTTATCTATGCCTTGTTTATCACAGTACAAGTCAAAGATGTCAGCGATAAATCCCATCCTAGGAATGTTTCTGAGCATTAGTTAATGTTTGTAAAGCCTCCACCTCCATCCTCTAGCAGGGAATGAAGAATGAAATAGAATCTCAAGTTTGTATTATCACTCTAGTTTCCTCCAGTACTTTCTGAGAGGCTTTACGCCAAAAGTTAGTGTTTCAGCTGCCAGAATGAGGGG---CCGTTTCAATTTTGCCTAGAAGAGTGAGCATTCCATAAACATCTGGGGTTCACAGAGGCACAATTCCAAGACAGCTTCTATGGAA-CAGATATGTGAGAGTGTAATGACCGGT-CCCACCAAGGAATTCATATCTAACTTTAGGCCTGCTGTTTCAATTCATAAAATACTTCTCATTTTAGACCTATTaggaaaagcaagctcaaaatGATGTATATAcgatttatttggagtttttaatGAGGAAaacttttacttaaaattaaa-cacattaaaTGT---TCATGAAGATTGGGCAAACATGGAAAAGGAAGGCTGGGATTAGTATTTTGTCCAGTAAATTTTACCTTATTTTGCCATATGTATATTATATCATGGATAAGGAATacacaaacatgta----caaatttgtgtgtggggggggattC-----TAAATTCATTCTTTCCAAAATGTTTCTTAGAG------------------GTGTTTATTATGTGC---CAAGAGC-----------------------------TGCTGAGGATACAACAAGGTACAAAACCAGTGAAAATCATA------TCCCATGTATTGTACATTCTGGGAACACCTAGGAGATC-TAATGTG-atggaatgatttttttcttttggtcctaGGGCTT-------GAATCCAGCCA--------------------------------------GTGTTTACACTCAGT-----GACACCCCCAATAGGCTTTTTGCTTCTTATTTCATG-----ACAGTGTCTTACTAAA-----CTGCCAAGGA----------Taagctcaaatttttttttttattt---ttatgcct----------------cagtttctcaaagtACTGGTAT-----TATAAGCATT--------ACCACCTTTCCTGGCTAATTTGATGACATCTTTATGTAGTCCCTGTGTCTGACACACTCTCTGTATCTAGTATTCAC-CAGTGCAAGTTTgataaaagaatgaatgagtgaCCTACATCAAGGTAGTATAGATATAGCCCAGACCTTCATTAGTATTAATCATATTTCGATGGCTTATTGGCATT-GGCCATTGCAGGACAAtcagaattaaataaatatttaatcaaC-TCTAGAAAGcaattttcttttcaagattaAACTGCATCCAATATTGGAATGCATATTAGACACATATATAGAAATTTATAAGAGTAGTTGAAGTATTTTT--CACACTCAAGAAATTAATGTTCAAGTTAACTAAGAAAGTTGagagggaat

a score=19093
s chr3           150241030 505 + 160039680 ATTTGAAA--CATGTTTCCACCTGTTCTTGAGTGTAAACAGCCTCAGAAGAATAAAAAGAACAGCACTCATTGTCAAATGGACACAGTCAAAGCTGAATTTTGATATTTCCTCATATCTGCCATGAAATTCTGACTGCATTC-ACATTAGTAACACGACTCCATTGATTCACATACATCATGTTATTGGCAAACAAAGGTACCTGTGGGATGATCACACTTTGATAATAACAGCCATTCATGAATACATGAAGACTGCTGAGAATTTGAAGGTTACAGTCAAGCAGATATGAACATGCCTTTGGAGTTTTCTTATTCTTGTAGAAATTATCTACAGAGGTGATCTTTAAAGAATATAAGAATCTTAATGAATTTCAAAACtaa--tattaaatattattttatttCTTATTGTGAAAAAAG----ATTCTAATATGGTCACAATTATCTCATTTGTTACCATTTCTAACTTTTAATAAAACCACTTAAAGACAATTATTTGTAT----AGTATATTTG
s HiC_scaffold_1 136824132 502 + 233722169 ATTTGAAAACCATGTTTACAACCCTGTTTAAGTGTACTGAACCTGAGTGgactagaaaggacagtgttgaTTCTaggacagacacag-aaaaacttAACTCTGATACATTTCCACATGTGCCAGGAAAGTGTGAATGTATTCCACATTTGTAACACGATTCCATTGGTTTTCGTACATCATGTTGTTGGCAAACAAGGGCACCTAAGGGATAAACTCAGCCTG-------------CTTATGAGTATGTGAGAACTGCTGAGAATTTCAAGGTTATACTTAAACAGATATG-ACACGTCCTGAGAGCTTTGTGCTTCTTATTGAAATGATCTGCAG-TGTGATTTTTGAAGAATGTAAGAATATTAATGAATTTGCAAATGCACCTATAAAGTACTATTTAGTTTCTGCTTGTTCAAAAAGAATCACTCTACTactctcaaatttattttattcattacaaTCTCTAAGATTTAAAACAATCTGCTAAAGAAGATGAGTAATATAGAAAGTATATCTG

a score=51828
s chr3           150243690 2583 + 160039680 AGAAAGAAACAAAATAGGCAA--------GCTCAGACTACCAAA-CATCACCTGTGCTCAGTAAACAAAAGCAATTC----ATTAGTTCAGAAATGTTTCACTAGTTCACAACGCTTTGAACTGAGATTCTCATTGCACAAGTAATTTTGTTTCCATAGAAAGAACATTCAGCTTCAGGCATGACA----------------TCACCTGTATGATTACTGGGTACTGGTGGTGTTTAGTGTATGGAATCATATAG-GCAGCTAACCATCTGTGTGC----------CACTCACCACACACAGCTACCTGACCTA---TATCAGAAGTATAATGCAATAGAAAAGCTATGCTAGAGATTGGGCCTGACCCTGGAGTGGTGACTTGGGTTATAGTTGACTTTCCCATAGCCTCACTACTCAATTATACT---------------ATGTAGTGA----------ATGATAGTTCTATGTAAGA--GATGAAATAGTTTCCCAAGGTAGTATGGCTCTTAACATTTGTTTATAACTGATACAAAGAAAAT------TCAGCTTT--TTGGAGTGGCTTCACTCAAATCAGG-AAATCCCCCAAACCTCTATTAATGTCTTTTTTTTTTTCTCTTTCCCTAAAACCAGCTTCATCATCACTAAAGACAAATATTCTGTCCT----GGGTACCAGTCAGCATCCCCAGCAGGTCTCTGGATGCAGCTTCTTCAGCCCTCTCCTGTTTACGTGGATGCCTCTGACTCTTAGGGGCTTCTTCTTCCCCTGAGTCTTCAG-GGCTC-----------CCCTTCCTGCAGCAGATGCTCT-TGTGCTCTGAGGCGTCTCCTCTGCTTGATTCCTCTTAGACTTCACAACACAAA----------TCTGTTTCATGCACAGTTGTTTGTCTTTCTTAGTAATGGCAGACACAAAGAGGCA-ATGGAGAAAAGGGACTAGC--TAGGGGGATCA--GAAGGCGTGTCACTTTGAAGGCTGGGGCTTTTTAGTTAAAATGT---TCCCTAACAACACAG-GCTGGCTGACTAAAGGAAGACACAAGCATTTAGATAGCAGGAACAACAAAACCACAGCCTTTGCTGATTTTCCAGGAGAAAAATCAAAGTATAGCTGAGGGTCTTCTGCTTCCTGCTGATTTTGTTTTTCTAAAAACCCCGTATTGATTTCTTCCACCTCGCAGATTCATAAACGTTATTAAAAATGAATGGCAGGCCTGATGTAAATTAAATGTCAGGTGGTTGATAGGTTTCGTAATATGATTTTTTAAAAAAGTTTAATGACATTCTTGCCTGCTTTGGTGTTAGAGGCATGCAGGACAT-GAACG-CAGAATCCAAGATGACATTCACTAGCAGAACGCATGAGAAATGGCATGCTTGCTCTTTAAAAAATAAGTAAAGGAACGGGGTATCATATTTGTTAGAGCTCGTTCCAATGGCACTCAGGCAGAACCTGGCCAAAGAGATTCAACAAACCTGACCTTGTCATTCTTATTCTTACCTTATTTAAAAAAAAATCTTTATtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgtaaaggtcagaaaacatcttgtggggagtgggttcaccatatacatccacgggatcaaactcaggctgataggtttggtgacaagcacctctcacaatgagatcatatcgcctaccTGTTCATGCCTCTTTAATCAGAAGAAATATGTGACGACTATCCAATCCCATGCTGCTTGAGAAAGA--TACTTATATCAGGCTATAAAAATTAAGATGAAGGACTACACTTTATTAAGGTCGATTATAATCCCTTCAGGACCAATGTCAACCTTTCAAAATGCCACATTCGATGCAAAGAGTGAAAAAAAAAGTTGTTTTATTTGCCCAAAATGGCTTGTCATCTCTTTTAAAGGTCCAGAAGCATAAAAGAAATGT------TGTGTGCTTAGAGGCACACAG-GTTACTCCCAGGCCTTTCCCTTGGCCCAGATGAGTGCTCACTGGACGTAATAACTTCATCGACATACATTTCTGAGTGGATTACACACACGCACCTCATGACTCTAAGTATCACCCCTGGATTTAGTCACTCCACGTGGAAAATCCCCCATTGACCAACGGGAAGAAGCG-----GCGACTTCGAATCT-GAGTCTCGACTAGTTTATCTCCGGCAGCAGACAATTTGTGTTATTTTTACTCTTTGTGGAGTTCGCCCCATGCTGCGACTTGTGAACCAAAGCACCACTTTCA--CTTTCCTGACAGTGCTTGGGGAGGACGCTGGCACACTCTGCCATCTCCACTTAA---CTGTGTACGACTCGCCCCCC-GTGAATTATCTCTGTTGAAttttcctttccttttatcttttttctttttcatttttcattttttctCAG-CCCCTGCTGACAAAACCTGAAAAGGCAACATGCATCCTTAATAGACAGAGCGCCCTGCTCCCAGCAGGGTGACACAGGTACTCGCTGCTTGCACGTGTTCACACTCCTTAGGaagaaaaaaataaccagaaaaaaaaaaaaaacaccaaaaaacaaaaaagcaaaaaCTGTCTTTTCGTCACAAACCAACTGAAAAATATTTCTGCC-TTTCACAGATCTCATCTATTCATCCATGCCAATTATTATTATTTTCTACAAAATGGGAGGGGAAGAGCTACAGCTTTACT
s HiC_scaffold_1 136825816 2365 + 233722169 agaaaaaagcacaggAAGCAATAAGTAAAGCACAAAGAAGCAAATCATCATTTTTGTTCAGGACACAG------TTCTGAAAATAGTTCAGAAGTAATTCAGTAGTTCAATGAGCTTAGACAAAAGAGC-----------AGGAGTTTGGCCTCCTTGCAGGGAACACTTGGCT--ATgcctaaagattttttttttttttttaattttcatgacaaTAAGGTGCTGCTGAG--TTAGTGGGTAGAAGCCAGGAGCACTGCTAAACATCGCTATGCACAGGGCAGCCCCTCAGAACAAAGAAAGACTTGGGCTAACATATTGGCAG------GGATAAAAGAAGGGATACCAGG--TTAGATAAGCCAACTAAATGATGAGAAGGGTGGTA--CACCATGCACATAGGAAGACTGTTGGATTCTACTTGAAAAAGACTGAATATTTAATGGTGACCACGGTATGAGGGCTTTATAGAAGTCTGATCTATGTATTCTCTGTGGTTCCAGGACTTTTATCATTTG---ATAATTGATACATTAACAATCTACAATCAaatttgtttagagtgatttctGTGGAGTGAGGTAAATTACACa------------tttgtctctgcttttcttaGTTATTGCAATCAGCCTCATGGTCATTTAAGATAAGAATTCTATCCTCATTGGGTGTCAGTGGATACCCTCCTCAGGCCTTAGGACATA--TTTCAAATCACTTTCACCATTCAACAGGTCCCTC-----CCTAGCAA--TCCTTTCCACCTGCCTGTTCAGCAGCTCTTGTCTGTACCCCTGTCTCCCAGCAGGTGCTCCCTGCACCCTGTCGTATTCTACTTCCTTGATTCCTGCTAGTCCTGGAAAGACAAAAGAAGCAGAGTCTGTGTCATGcacatttgtttgtctttttaagtaatcaaaagcacaaaaaagcagatagagaagaaggaagagacgTGAAGGGATCACAGCAAACA-ATCACTTTGAAGACTTGAGCTTTTTagtaaaaaaatgtttctctAACAACACATTGCTGTATGACTAAAGGAATTCAGGAGCATTTAgataacaagaacaacaaaacaacaccCTTTGCtgcttttccaaaagaaaa-tcaaagtagtGCTGAGGGTCTTCTACTTCctgctgattttgtttttctaaaa--cgTGTATTGATTTCTTCCACCTCAGAGAttcataaatgttattaaaaatgaatGGCAGGTCTGATTTAAATTAAATGTCAGGTGGTTGATACGTTtcataatac--tttttt--aaaattttaatgacattCTTACTTGATTTCGTATTAGAGGCATGCAAAACACAGAACACCAAAATCCACAATAGTTTGTGctaaatgaatgcatgaataatgaatctcttgcttttt-aaaaataa--aaaggaacagtaTATCATATTTGCCATAGCTTATTCCAA-------------------AGCCACAGAGGCTAAATAACCCCTAGTTTCTACTTATTAGCC--------------------------------------------------------------------AGGACAGAAATCCT---------------------------------------------------------------------ACCTTTGA---------CTTATTGACT-CCTATT--TTCATCCTTAAACAGGATAATTATGTGAGTCATATCAAATTCCTTGATGATTTGGAAGGCATTCCTGGCATCAGGATGGAAAAAGTAGGATGAGGAGTTGCATTTTGC-----------------------AGCTGAAAGTAAACCTTTCAAATT-----------------------ATAAAGGAGTGCTTTTA-TTGTGTGAAATGAGGCATCATGTATTTTAAAGATCCAGAAG----AGGGGACTATGATTTGTATGTATTTAAAGACACGCAGTGTTCTTCCAACTCTTTTTTCTTTGCCCAGGTGAGCATTCACTGGCTGCAGCCAC----TCACtttacatttcaaaatg--tttcatCATGACACTTGATTACTCTAAATACAGCCCCTGGTCCCAGTCACCGCCACTGAAAAGCATTCAATTGACCACAAGGAAGAAGCAAAGATGAAACCCTGACTTTAGGAACTTGACTAGTGTATCACAG---GTAgacaatttttgttattttctctctttgagGAGTTCACCCCATGCTGCTTCTTACAATCCAAAGtagcactttcatttttttctgatgtgGCTCCCTGTGTAGGAAGGAACACTCTGCCACCTCCACTTTAGTGATGTGTGCATTTCACCCCCCTGTGAATTACTTCTGTCGaacttt------------tctcttctcctttt--ttttttatttcttttcagactCCTGCTGACAAAACTTGCAAAAGCATTGTGCATCCATAACAGCCA-AGAGCCCTGTTCCCAGCAGGGCAACCCAGGAGTTCGCAGCTCACACATGT-------------GGTTGATCAAGTGATC----------------CACTCA-------------GAAAGCTGTCTTGT-GCCACAGGCCAAAGGTGAATAATCTTTGCTGTTTCTTGGATGT-ACACACTCACCCCTGCCA-----TGTTTTGgtttacaaaataagaaagacaGCACCAAATCCATGCT

a score=91305
s chr3           150275386 4738 + 160039680 [encoded data, 5216 characters]
s HiC_scaffold_1 136864582 4879 + 233722169 [encoded data, 5216 characters]

a score=47572
s chr3           150282589 3795 + 160039680 [encoded data, 4144 characters]
s HiC_scaffold_1 136871916 3546 + 233722169 [encoded data, 4144 characters]

a score=13353
s chr3           150291197 678 + 160039680 AGAAAATTCAGCCTCATCAATGATGGTAGAAGCTATTCACAAACCCAGCCTTGTTTCTTTAATAAATTGCTGTCAAGCATTGCAAAAGTTAGACCCAATCAAGGACAGGC-AAAGGAGAAGACACACATCTCGATAAATCTTGGAA-AAGTACCGTCTTCTTCTGGAATCACAGACATAAGGGGGTGACTAAGTGTCTTATTTGCATCAGTGGTATCCTTGAGAGGTCTGGAATAAGCCACAGCAATGTAAATCAGGACAGAAGTGC--TTGCCTGTTGCAAGGGCATGTGGGAAGTGGGTT---GTTTACTGGAGAGCATGGATACTTTTGTG----GTCTCCATGGAGAATAATTCTAATCAGA-GAAACAAAAAAACTT--GTTGAGAAAACAGCTCT-GAACTGAAAAAAAAGAAATAAGAATAGAC--------AGCTAGTAGAAAGCTAGATGAGACATTTATGAGAGATTTCA---AGAACAAGATCAGTTCATCCCTCTGAAAATACAGCATCATTCACAAGCTGTGAGCATAAAACGTGAGAGTCTAAG--GACAGTTATACCCTTTAG--ATTTGAAGGCACAGCCAAGAATTCATTAAAACACCTGAGCTGATCTGAATGACAACT--AAACCAATAGGAAAGATTATCATAAAGATGACTGCCCTCACAT--TGTATGTCAAAGGAGTTCCTAGGAAATG
s HiC_scaffold_1 136881311 678 + 233722169 aaaaaatgtagtttcaCCAATAAAAGTAGGAGCCAACCACAACCTCAAGCTTAT------AATAAATACCTGTCAAATACTGGAAAAGTTAGACCAAGCCAAGGACAGACTGAGGGAGAAGAAACAGAGCTCTACAAATCTTAAAACAGGTGCTGTATTCTCCTGAAATTAGAGAGTTAAGGAGGTAACTAAGTCTCTTATTTGCAACAGCAGTGTCCTTGGCAGGTCGTGGATGAGTCACAAAATTATAAATCAGCACAGCAGCACATTTTCGAGTTGCAAAGGC--------AGTTGGTTGGAGTTCGCTGATGGCCACGCCGAGTTCGCTGCTTCGCCCCCAC--AGCACAGCGCTAATCACAGGGAATGCAGTAACTTTATTTAACAAAGCACTTAGAGAGCAGAAAATAAGGAAATGGATATAAATGTATGTAGGGcatgaggaaggaaagaaaagttg-taaggagaaagttgaaagaaaacaaatgcaactCAATCCTATGtaaacaaaatgtaatatatattataaaaagatAATAC-TGA---TATAAGACGACACGAAT-TCCTTTAGTTATTTACGAGAGCAGTTAAAA------------ACCTAAATTGACCGGAGTgctgtttaaaaaacaattagGCAAGTTTTCTTAGGAATCACAGTTCTAAAATAATGCATGTAAAAGATGGCCACAAGGATTG

a score=95014
s chr3           150295313 3140 + 160039680 TCTTCTGGAATACTGGTTCTTTCA----ACCATGAGTGGTCTCTGCATTGTTGTATTTCCATGATCAAAAATACTAACTTTACAC-AATA--TATTTAATGAGTATTTGTAGATTGAATGAAGAAATAAATGGGAAAAAAAAC-AGCAAAAGACCAGTTTTCTAGCCATTGAACTATTTCATTTGCATCACtaaaatatttaaaaatataaata-attttatttatttaaGAACTATTTT------------ACTTTTATTAACTCACTATTTTGGTTTGA---ATAAAACAGCAATGTACTATATtgtgtttaaatgtgtttagatgtttaaatgtgtttagatgtgtttaaatATAATCATACTGTTTTGTCTTTAGGATAAATTCTAGAACAGAGGATT-TAAAAAATATGTAATTATCTAGCCAATAATGCATAATATAAAAAGGCTTATTATTTTTTAAAGA---ATGGATATATTCAAAACAAAATGATTTTCAGTTGAAAGTTTGACTCCATCATTATACTGCAAGTTTCACCTCAACCTATTTTGGGATCACTACTCTGCCTTTAGTCTTGGATTATATTGAATTTAGTTGTATTAGACTTTCTCCAGGCAAAATTCCCCAGTATAATTTGTTTAGGTAAGAAATACAAAAGTGAGTTTTAATGTATATAATATATGACT--CTCAGATAAAAAGTTTTAAATCTCACGCCTAAAAATCCAATAATTTTTTTTTA-GAATCCGAACAGGAAACGTAAATAAG-CCACCCAGTGTGATCCATCCACTACTGTTTGACTGGGAAGTGGATTAAAATCTTAAATTATTGCTGAAGTTATCTACATTAAAAAAAGACCCAAACCTCAGAGCTGAGAGCAATCAGAGCT-CTGGTGTCAGCTGTGCTCTTTCCTATGGAGCTAATCTATGCAAGGAATATTTATCATTTAAACAGTCCTACCTCAAAGCTCAG-GATGGCTTTATGTTGCCCAAAGAA----CTTCTGTCTGACAGTTAATACAGAAGGGAAGGAGAAAGAAAGAGTGAAGGAGGTTATCCACGTTTAGCTCACATTTTAAAATAAAGAGA-------------GCATTCCAAATTTGACATCAACCCTCCCCCTCCCCCTTTTCCTCTAAAACACTGTTTTAGTTTAGAAAGAA-TTTGAAATTGACATTTAAATGGTGGTGGGGCAATTCTCTTTCTCCACCATGCAAGATGGTCTCTGGAAATGTACAATTATGCTGTCATCCCCAGCACTCCACATTGGACAGACTTTAATTATTAATGTGTTTCCCTCAGAGAATGACTCGATCATGTCACAACTCTAGACAAATACAGC-AATGCAAAATCATAAAATATTCACTTGAATACTGCTGAAGTGACAGGAAGTTAATTCTATGAACACTTTTGATATTACCAGAAAATTAGTTTCAAACGCATAAGACTGAAATAAATGTGCTCATAATTTGCTCAAGGGTAACGCTCATCTTGCAATCAGTCGGTGTCTTTTTATAAATGTTACAAGTATTCAACATGGC-TTATGATAAAGAGGACAGCTAATGTAATGTATTATTTGTAGACAATGTTTTACTTGTAAACAGCAGGGAGTGAAGAATCGCTCTCTTAGAAATATTTAAACTCCAATAATATTCTGCTATTCATCATTTTGTTGAACTGAAGAAGTGCTATCAAAAA--------------------AGAAA---AAAAGGAAACAATAA------AAACTTTTTCTTGTAGATAACTGTTCCAGTTTATAT--------CTAAAAGCTAAGAGGTAAGGATTAATAACTT-AGATTATTTGTTGGCTAACATTGAACAAATATGAAGCTTTATGGTTTTTAGAAACTAAAAGAATAATTAAAGAAAAATTCCCTCTTCTGTGTTGGCCCAA--------------AGATGTTTGCATAGC---ATATTGCAATAGTTTGCATGTGCATTCTCATACTTGATCAACTAAAATATTTCTTAAAGGCCAA---CATACTCACTATTTACCACT-------------CTCAAGTACCATCCACAAAAGCTTTGTCCATACATTACTTGATATATAAGAAAACAAATAGAAAAAA--------ATTTTAAATATGAGTTCTCATGAAAAAAAGAATTTTTTGTAAGAAATTTTTTTATTAACCTGAATAAGCTTTAATTGC----CTAAAAT-------TTGCTGTGAATTTCTAGTTAC--------------TGATCCAAGCTAAGGTCACAAGACATT----------TCTTAACACTGTGACCTTCTTGGAGATGAGTTGTGTCTGATGAAAATCTTTAAAGAAAGGCTAAGA-GCCTGTAAAAATGTCACATTCCTAGTATCATCATGAGTGTGAACTTCTC---TTTCTCTTGATGAAAACCTCCTTCCACTTTGGGTGGCCATACACTCTGTCTTTATTATTAAAAAACAACAAGTTTAATTCATACAATTCTACACAATAGGAGATGTTTTGACAGGTTCCTACTATACTACTATACTGGTTTTATCTTTTAAACAAGGAAAATTAAC-ATATTATAAACCTCAGACTTTCTAGACCTTGTGT------------ATATTTATTGTACATGGGA-TATGAG-AAAAATGATATAATTAGCCTTGGGCATTTTTTTTATCTTGTCTGCAAAAAATGATGTAATAAAATA---AGAGAATGCACCTACCAATGAATCATAAGCAAT---TTTTGTTTAATCAT------------TTAAAAGTATAAGACA-------------TACTATCAACCA--------TTATCCCCT-------AAAAGTACTTCCTAAGATAACAAATTACACAGGGAGTATGATTTACTTATGACTGCATAAATGCAAAGGGAAAAAAAGCATGAAACTGAAGGC---------ATTTTAGATGTCTTGGA----TTCAAAAGATACA------AAGGAAAAAATCGATACTTTTCAAATATGTGCTATAATATAACTTTTCCAAG--TTAGTT-GCCTGCAGATTAACATT----------ATTTGCACATATTTTTTCAGGAGTGGTTATTTATTCAACAACTAAGAACTGTGATGTTTAAGTATTGGATCTTGAAAAAAATAGTATACAAAGCACAGTACCTGTGTGGCAACATTGTAGCGATCAAGACAACTATCATGGCAAAGAGG------------ATTTTCCTGTCCCCAGTTGGGATG---GGAAATTTTCAAGAAACATTTAAAATAT----AAGAGTGTGACTGAATGTTAAAGGAGGCA-GAATTTAAACTATTAGGATGTTTAAATTAAAGGGATGGGAAATTCTAGCAGATAAAGAAAATTATGGGAGGATT
s HiC_scaffold_1 136886122 3268 + 233722169 TCTTGTACAATGCTGGTCCCATTAGACCAGCACTTCTGCTCTCCCCACTGCCCTGGCTACAGCATCAAGAATGCTGCCTGGCTATTAATAAGcatttaatgaatatttgaagaatgaatgaacgaacaaatgaaaatataaatgagtaAA----CACTTTCCTGGTCATTGAAAGTTTCTGTTTATATCACTCGACTATTTAATGATATTAATACATTCTATTTGTTTAACAAATCTTCTTTTTAGCCATTGACCTATATTAACTC-CTATTTTCTTATTAGCAATGAAGTTGCCATGAACTACATTATGTTTAAAT------------------------------------------CACTAGTattatctcttcaaaataaacttCAGGAAATGGGATTATTTAAAGACTGTAATTATGCATCCAATGTTTCACAATAAGAAA----CTATTATttctaagaaatatatatatatatttaaaataaactgaagTTCA-CAGAGGGATTAGCTGT-TCATTCCACAGCAAACTTAATTTCAAATTATTG-GGGGTCA------GGCTTCTAGTCTTAGCTTCTGTGTAACTCAATTTTGTTAAGTTTTCTCAAGTCACAAT-CTCAACCATAGTTTGTCTAGGTAGGAAGCACAAATGTGAGTTTTAATGTGTTCAATATATATATgcctcaga---aaattttaaaatctcacttCTAAAAA-CCAATAACTTTATTTTAAGAATCTGAATGGGAAACATAAATAAGGACACATACAGTGATCCATCCACAACCATTTGACTGGGAAGtagattaaaatcttaaattattgCTGAAGTTATCTAAGTTAAAAAA-GACTCAAATATAAGAGCTGAAACCAATCAAAGTTTCTCATGTCAGCTGCACTATTTCCTACAGAGCTAATCTATGCAAgtaatatttatcatttaaacAGTCCTGGCTCAAAGACCATTGATGATGTTATATTGCCAAAAGAAAGAACTTCTAACTGACAGTTTATTCAGCATG-----AGAAGGAAAGAGTGAAGCAGGCTATTTGcatttagctcacattttaaaataaagagaaagtaaaGAGAACGTTTTCCAAATTTGACATCAATCCCCCCCACCCA----TTTCTCTAAAATGCtgttttagtttagaaagaaaTTCTAAATTGACATTTAAATGGTGGCAGGGCAATTCTCCTTCTCTGCTTTGCGAAATGGTCTCTGGAAATGTACAATTATGCTGTCATCTTTAGCACTTCACATTGGACAGAGTTTAATTATTAATGTGTTTCCCTCAGAGAATGACTCGATCATGTCACAACTCTAGACAAATACAGCTAAtgcaaaatcataaaatattcacTTGAATACTGCTGAACTGACAGGAAATTAATTCTATGAACACTTTTGATATTACCAGAAAATTAGTTTCAAACGCATAAGACTGAAATAAATGTGTTCATAATTTGCTCAAGGGTAACGCTCATCTTGCAATCAGTTGGTGTCGTTTTATAAATGTTACAAGTATTCAACATGGCTTTATGATAAAGAGGACAGCTAATGTAATGTATTATTTGTAGACAGTGTTTTACTTGTAAACAGCAGGGAGTGAAGAATTGCTCTCTCAGAAATATTTAAACTCCAATAATATTCAGCTATTTATCATTTTGTAGAACTGAAGAAGTgttatcaaatatatatttttttctgtaactgaGAAACTTCAAGAGTGGCAAGAGGATTTCAAACTTTTCACTTCCAGCAACTGTCGTATGTCTTGTAACCTACCTTAAATATggattaaaaatgattaatatctTAAGGTCACTTGGTGGGcaaaattgcatacattttcaattttatgagGTTTAG---TTAAAAGTCTCCCTCAATGAAATTTACTACTTCAGTATTTCCTCAATCAAAACTGTGCATGAATTTTAACATAACATTATACTGAAAttatttgcatctatattttcACACTTTCTCAGCTAGGAGA--CACTGGAGGTCAAAACCTTGGTCACTGATCACTATTTTGGGTGCATGGGCTGATGCATGAT--GTAAAGGTCACATGtgtaatttatttgttatataactgaaaggataaaaacaatatgTGTTATTCAAAACATCAAt-------ggagaatgaaattattat-atacatgtatatatcactttaaaatatctttcaaagctattttaaaatgcCTCTCTAACAGTGCTTCTCtagctatattttttttatttatagagtaAAGTAAGCTAATCAGATGTTCTTCCTCTGATTTTGAAACTGTTACCTTGTTGGAAGTCAATCACATTTGAAGGCATTCT----AGAAATTCCATCACTCTTGTAGGAAGGTGATACTTC-----TTATCATGAGCTCCAGCATCTCTATTTTCTCCTAATAAATATCTCCGTGAGC-TTGTGTTGTCAC---CACTGTTTCTATCATTAGAAACCAG-AGATGTGATTAACG------TATATGATATGAGGCATCTTGAAAACATCCCactatatta----------tgtat-ttttatacaaacaaAATGATCTATATTTCTATGTCTAGTATTTTCAGATCTTTCATGCTTTCTTTCAGATACTTACTGTATATTCAAGTGCAAGTAGaaatgttataaat---tttaaacattcatgttgtattttctgt-aaagatgatacagtgaaatatttaaaaagcataattatttataaatcat-aGCACTGGATTTAGTTTAATAGTTTTAACTTATTGTTAAAATTGCAGGAAATGagtttttttggtaatgggaatcAAAAGGAGGTTGTATTTTGCATTGAAAAATTACTTCTTGAAATTACAGACT--TGGGGGAATCTGATGTAAATATAAAtgcataaac--------ataaaaatgacaaagttgAAGATCCgtttaaaaactcaaatattgAGAAATCTTTTAAACAATATAATCTTGAAAGCAATAGTTAGAATTTTTATACTAAATGTTTTAACGTTCCTCTCATAAAGTTTAATTAAAACACATGTTAAATTTTATATGTCAATTTTGTGTCAATTTTTTCAAGAGCAGTTATAGG---AAGATATAAGAAA------GtttaagcattcattgtttgaGTA---TGTATTCAAAACCTGCTTTCCAAATAACATCATACCAGAGGCTAAAAAA---GTAAGagtaaaaacacaaatatttctcACTTTTATATCTCTAGCAAGGAggtaaagaaagtttaaaaaag---ttaATACATGGAGAAGATTATGGCATAATGGAAAAGGAGGTATAAATTGATAATGTTTGGG-GTTTAGattaaagaaaaagggaa--atatcAAATAAAGGCAAGTATGGAGAGATT

a score=51156
s chr3           150303214 4817 + 160039680 [encoded data, 5196 characters]
s HiC_scaffold_1 136895124 4693 + 233722169 [encoded data, 5196 characters]

a score=27159
s chr3           150311417 2080 + 160039680 GGGGGCAATTAACAGAGATGCCATCACTAAGTTTATTAATCAGAGTCTGATGTTGACAAGACAAGTGATATCAAAGTATGGAAAAGGTGATTCAATTTGATACCAA-----AACAAGAAATTCACAG----GGGAAGCATATGAAGAAGAGCCAGAGAGTA--ACAACTGTCAAGAAAGAGCAA-AGCCTGCAGCTTTAGGGTA-AAGATGGCTCCTCAGTATCCAGTAGTACATACAATGTATAGGAATGAAATGCCACTGAAGATCAAGGAAAACAGAGTCTTCATTGGTGGTATAATTTGGAGGTCATTTGCTGCCCCTAAAGGTAGATTTGGGGAACTTATTCTCAAGTGTTAAGGTGTTACTAGAAAACCTTTAAGGTATGGATCTACTGGGGGA---TTAGAGTCCAGTAAGCATG-------TCTCTTAGTAACATCAGATTGTTCTTGCTAGTTTCT--------GTGAGAAGAT--TGTCTTGATAATGCTGAGTTAGGAGCA--------------GTCTGCTTCTAGACGTAATTGGTCCT-------------CTGCTGTCTTTTACAATGTGACCATAGTCATGACAGTCCCTCCCTCAACTGAGCAGAGGTCAACACTATGGGCTTGCATGCCTAAAACCTTGTTAAGTTTACTGTTTTCTTCAAGGCTATCCTGCCTCTGATGTTTCAATATATCAACATGAAGATGATTGAAACAATTACAAACAAGGTTTT-TTCCTAAAGAATTTTGAAAGAGTGAGACTACATAATGCTAACAAAGAAAGGTATGGGCTAAGAATCAAACATGGAGGACAAATCACT--GTTTCTCTAATTAGAAGAAATGAGGCACAAA---ATGAAGTTTCGAGTGTATAAAGATAC----------------------------------------------------------------------------------------TGGAGAGTCACAACGTTAAGGAAATTAATGTTGAACTTTTGCAACTTGTCTAGAACAATTGACACAA---------CTGTGTATAGACTTGGA-------AGAAAGACAAAGAAGTGTTAGGAGAAGCGTGTAGGAAAGAGTAGAGACC-----------ACGTGGGAGGAGACAGAGCTGAGAAG-AGAATGCAGAGAAA---AGCTCAAGTTTTGTAAGTTAGCACTAGAGGAATAAGAATTAGTTTAGAGAATTCTGAATAT-TTGTGACATCTCATTTAAGTTCAGAACATAAAATTTTACAGTTGTAATATACAAAACATTTCAGGCTCA-----ATATTAAGTTAATTAAATTATTCCTAGTCATTTAAA---TACTTGATTATTTTTGACAATGAAGAAGAAGTTCCTAAAGCTTATATG----TTGCAGA-AATTCCATTTAAGGTAATTTAAATAA-----------AAACACATGTGTGAGACACAAAGCATAATCATATAAACAGAAAACAA-AACCTG--AGGGAAGAATCAGGAAATAATTATCTGCTGCCCAATTATCATAACAAAATATGTATTTTAAAATGTAAAATGTATTTATGGGTAGAATTTTTCATATTGGG---------GTACATATGAATATATATTTAATTCTACTGCATATAACATTAATCAATAAACA--TCTATGAATTATGGGACACAGAAAAGATA---------CCATAAAAAACACAATGCACTGTGTCTTG-------TAGTTTTAAATAAAAAAC---ATGGATAATATAAATTTAAAAAAACAACTTATTTTTTTCCA---------ATTGGAAAAAAATAGCTTTTATTTAGAGGACAG---AGTCCTGTAGATGTGCTCTAAAGTACAAAAACCAACCCCCCCCCCCAAAAAAATCTTCCTTTCTTTCAAGTGAATTATTTCAAACCCAGAATATAGGAACATCTGTTTAAGGAAAATGGCAAACATCTCAATGTTTGGCAACACAAACTACCCTCATCATAGTACAGAATGTTTTCA-TTTACCTCATACTAACATAATAATTAAAGAATTCTAAAGAGTTATGTTTAGAAAAAGTGATGTGTTTTTGAACTCACTGTACAAAAGAGCTCACATAGGTTTTCCTTTT---------TGTTCATTAGTTTGATTTTAAACTTTTCTTCAGAATTAC-AAATTTCAAGTAATCAGAAAGAAGGCACAAATAATCATGGAAAAGCTGTTCTTAATGATTTGTGTTTGCATATTGAGTTTCTGGGTGGTCTATTGGTTGGACATTGCTTTCCATACTGTATAATTTCTATAATGCAGAATTCTTCt
s HiC_scaffold_1 136902021 2208 + 233722169 GAGATCAGTTAAGTGAGAAGCAATCACTGTGTTTAGGAATCAG-GTAAGTGGTT--CAGTAAGGCTGATATGA---TGTGGAAGATGTGGGT-------ATACCAGCGAGCAATCAGAAA--CAAAGCTTAGGGCAAAAGCTGAGCAAGACCTGGAGGATAGTACTACT----AGAGAGAGCTGTAGGCTGCCATTTTAGGATGGAAGATGGTTCATCAGCTTTCTGTGGTCTAGAGAGCAACTCGTGGGGAAGTACCATGAAAGACTGAGAGAAGTAAG---CTAATTGGGGCTCTGCTTTGGAACT-GCTTGCTCCCCATAAGGCTGTGAGCTGAGAGCTTGGGCTTTGGTGTGAGGTTGAGAAGTGAAACCTGTAaaaggtggggcctggtgggagaCCCTTAG------GTGAACATGAGATACACCCTTAAGTAGAATA----TACCCTTGCAGGACCCTAGTTAATGGTAAGAAGAGGATGGCTGTACGGTTCTGACCGAGCCACACCTACTGCAGAAGCTTCTTGTTTAACAGGTGATCCATCATTCCTCATCTAGTCCCATTACCTGCCACAATGTGACT-CAGCCAAGAAAGCTTTCACCTGAATCAAGCTGACACCAGTGCTGTTA--CTGTGAGTCTCAAAATCTGTGAGCCAAATCTTTGCCTTTGTAGTTAGCTTACCTCAGATATTTCCTTATAGTAAAAATAGGGTGACTAATACAATTG---ATAAGATTTTGTTCCTCAAGAGATGTGA-----TGATATTA--TCATGCTC-CAGAAAAAGCTGTAGAGAGGAACTCAAATTATGAGGGCAGATCCCTCCGCTATCTTTATAAAAGTtgatgagacaaaaataaatgaactat---gtatatatatatatatatatatatatccatctcCATTTCCATCTCCATATCCATCTCTTTCTCTAGCTATAACTAAGTATAATCTACATCTAAAGAGAGAGATAGTGAGAtagagagtaaaagaaagaaagttctaGCAGACACAACTTGTGTAAGGAGGGTGATACAAGGTTATTAGAGGtgggcagacagagagagagagagagagagagagagagagagagagaagagcacagggaaaaggagaaaattaaagaaagaaagatgagaagagagagaggTTAGAAATCGAGTATAGTTAAACATAGTGCAAGTTAGGGAA-TTGGTCTAGGATAAAGAAGAAGTAATTTAGGTCTTGTTAAATATCTTGT--------ATTTCAGCTTGAAGAATAAATATGTAGa----------acaaaactttataaggttATGTGGATGTGCTGTT--TTAAATAACTATTATACAATTAAACGATACTGTTGTTATGTCAACCATGAAGATGTGGAACTGTATGGTTTTATTAGTCTTATAGATACTTTTCTATGATATAATATAAATAACCTGCAAGTTAGAAAACACGAATGAATCACAAAACCTAAACtgataaacagaaaataacaggCTGCCACTGAAGCATCATTAAAAATGTAC-----------TTATCACAATAAGGATTGTATTTTGGAATAGA----GTTCTCACCCGT-GCATTATACATATGATGTGCATGCATGTACATAAATAtgtgtacttttttctcttatcAAGTGAACTAAACTATAAGTAGTTTCACAAATAATA----ATAGAGAAGATATTTATGAAGCTATGCAATCTATAATGCATTCTAAATTAGggagtttaaatttaaaaaaaaaattatacatatagtatatatt-aaaagaataagAT-TTCCATCCCAGTAGCTTGTATTGCAAATTTATAGCTCTTATTTAAGGAATAATGAAGTCCGATGAAAATGTTGTTAAGTAT-------------------CAAAGAAATCTT--------TCAAGAAACGAGGGGCCAATTGAGAAGATGGAAACATCTGTTTCAACAAAACGGCAAACATCTTTAAATTTGGCATCACAAACTACCCTAATCATAAcacaaaatgttttcagtttacCTCATACTAACACAATAATTAAAGCATTCTGAATCATTATGTTTACGAAAATGTATGTGTTTTTGAACCTACTGCATAAATGAGTCCATGTAGTTTTTGCTTCTCATACAATGTGTTCATTAGTTTGGTTTCCAACTTTTATCCAGAATTACAAAATTTCAACTAATCAGAA--AAAGCATAAACATCCATGTAAATGatgttcttaattattt-tatttacatacagAGATTCTGGGTGGTATGTTGACTGATCA---------------TATATCTTGTAAATGGTAGAAttcatct

a score=41678
s chr3           150314538 924 + 160039680 GAGACAAAGGTTGAAAAGTTCCCAGTGTGCTAGCTAGGTAAT-AAGTCCTCTAACTCCAGGAAAT-CACTTCAATAGATCATGAGGCCAACGTAGGAAGGGCTTTAGAAACGGTGATCTTCTGTTCGTTTCACTCTTCAGACAGCCAGCTGCTTTCTAGGCTGCCGCTGTGTTTAGAAGACAGCAATAGAGAATGTCTATTAATGTGACCATACGGGT-CTGGCCCTGCTGCCACTTATTCATGTGACTGTATTCTCAATCAGGCTCACAACTGTGATCCCCGTT---GCATGTGTGATCATAAGCGGACTCCAGGCAAATTGGATGGAATGG----------AAAAAAGCTTTTTCTTTTACATTCAATTTGCTATGGTTATAGAGACCCAATCATTGTATCTTTCATGATGTGTTAAAAGGATTTGAGGTGCAAGGGCTATTGTGCCAAGTGTCATACAGTATTCAGAAGGCACCGTATTGGGAGATTCAGAGTCCTAGAAGTCTGACCACTTTCCTTGATCTC-CTATGGCTCATCCCAT---GCATGTCAAGAGTCCTTGTTCTTGGGTCTCTTCCTTATGGAAAAGCACAAAAGGCAATGCATAACCCATTATTCACACAATAAGTTTTACTCTCGGTTTTTGTCTG---AAAATGAATAGCTATctttggagccaattcctgaagtcataggtgccaggccttgttgtcacttactgtctgaatctgggtaagtcacttaacctctctgagttccagttatcacatctatgaaattgaactaataatagctaacttacagagtaccatgggtcaaatgcagtactgcaagtgagcatg-gatgaacactgcaaagtAAAACGCATTACAGACCACAGTTGCTCTTCTCTGGTACACCAGGTACGGAAAACTGAAATTAGTTCTAT-CATTTCTTTTAAGTAGG
s HiC_scaffold_1 136904731 929 + 233722169 GAGACTGTGATTTGCAAGTACTCAGCCTAGAGGAGAGGGAGTTAAGTGCTGTGTCTCCAGGAACTTCTCTTCCACAGACCCCAAGCCCCAAGTTGACTGAACTTCAAGAGTGACTTTCTCGCGTTCATTTCATGCTTCAGTTAGGCGGCCTCTTAATAGGCAGCTGCTGCGTGGGGAACTCAGCAGTAGAGGACGGCTGT-AATGTGATCGGGTGAGTTCAGGCCCTACTACAGCTCATTCGTGTGATCGTAACCTCCATCCG--TTACAA--GAATTCCCCATTATGGTCTGTGTGATCATAGGACGACTCCGGGCAAATtagatggaaagagagagagagaaaaaaaggattttCTTTT-----------GCTATGGTTATAGAGACCCAATCATTGTATCTTTTATGATTTGTTAAAAGGATTTGCGGGACAAGGACGATTGTGGCAGATGTCGTATAGTATTCATAAGGCACCATATTGGGAAATATAGAGGCCCAGAAGCCCAACCAGCTTCCTTGATCTCTCTACCTCTCATCACTTTGCGTATATCAAGTGTCTCTGTCCTGGTGTC----CCTCGTGAGAAAACACAAAAGGCAATGAATAACCCATTATTCACATAATAAATTTTAGTCTCAGTTTTTGCCCGTGAAAAATGAATAGCTATCTTGGGAACCAATTTTAAAAGTCATAGGTTTGGGGCCTTGTTGTCACTTACTATCTGAACTTGGTTAAGTCATTTAACCTCTCTGGGCTGGAGTTACCACATCTatgaaattgaaataataataGCTAACTCACAGGGTGCTGCGGGTCAAATGCAATACTGGAAGTGGGCAGGTTTTGGAAATGGTACAGTACAAAGTATTACTGACTGTGGTTTCTCCTGTCTGGCACAGTAGGTaagtaaaattgaaattatttccatGCACTTCCTTTTATTAAG

a score=35782
s chr3           150316281 2472 + 160039680 TAGAGGCTGCAAATATCAAGCCCAATGAGAAAGAACAG----AGAGAACTTG-AAAGGATTCACTTGTGACAAGGATTTGGAATACTTGCTAGCCATAAGGAGAAACTTAGTAAAGTGGGGATTAAGTTGATGTTATGAATGTATCATATTTAAAGGATAAGAAGCAACAATAGGTGTTATATGagattcatcagcacaaagtatatatatacaaagtatgtatacacatatatatgcatatatatgtat-atatgtagacTATAGTTG-------TATTTGTGAAAGTTCAAAGAGTCATGGTGCGTGATTCCAGGCACATGAACTTGACATTTTAATTGCTTCGCTGCAAACCTTTCAGGGATACCAACAAGAACATCTTTTAGTGAAGTAGGTTCCTTCATTCTCCAAGTTATTTTTAATCAGACTCATTTA--GTGATTAGTCACCATGCCTAATATA-GTCTTATTTCCTGAAAGTTTCTTTTCTTACATTCTCTGCTAAGTCACTAAAGTGGTCTCAAGTTATAAGCCAATAAAATCA-----------AAGGCATTACCAAAATTAAAAGTGAACAAAATTGTACTCTGGTGTCTGTTTAAAACATGTTCCATTATATT----ATAGTGTATGTAAAAAATTTGCTCTGTATACATTAGTTAAACAAGATTAATTGTTCTTTTT--GCAAAGTCTAACATCTTGAGATATTGCATAAAATGTTGATTTTATTAGACTATTACTGC-CAATGCTTATAAATTTCTTTTTACTTTGTAA-AAACTCTGTCCATCCTATCCTTTGAGGTCATTTGATTAACTACCATTGGTCTCTTATTGAGTTGAGACTAGACTTTAATCCCAAGAAATTGGAATCAATGAAATAACTTTAAAGTAAAAAGTA-----TTACATTATAATAAGAAATGGTTCTTTAATGTACTTGCCTTTCTTTATATACTAACTCATTTGAAAA-TACAG------TCATACTGTAATAAAGTCAAAAAAATTA-TTTTTAATTCTAAAGCACAGATTAGCTGGTAGCAAAAATATTCAATTGATTCTT-------GTCACCAAATGAAAGTAGT-------AATTTAATTTAATTCAAATACTTGAAAATTTGTTTATCCAAT------AAACAGAGTCAAACATGGAAAGTAATAACTATCCCATCTAAAAAGTATATTTCTGCTAATGAAGAATTGACACTATAACACTTGTAGTTCTTGAACAATATTTGGAGCAGTTATAAG-TAAGCAGAGACTAAGCAGGTAGGGATTTCTCTCAATAATGTGTGTTTCACATTCAGTTTTC---------AGAAAACAATTTAGA--ATCATTTTAGAATAAATACTCA-GTTACTGAAAACATGAA-AGGTTTAAGGGATGGAAGATACCTGCATTTCAT-GTTAGAAACCTGTCTGAGTTTCTTCCACTTAAA---AGAAAGTAAACTACAGAAAACCTTATGTGATGAACTAAGAATATTGACCCTCTGATGACTTTGAGACAGAATTCTAGAAGACAAACTTCACCTTGACTATGATTTAAGCTTTCTTTTGGAACCGTGCCTTGACTTTACTGGCGTATAAAAGCTCACATCATCATTTCTAAATAGAGTTTCCACTGTAATGGGTTATTAATATTGCCAGTGCTGTTTGACTGGAAACCTGAGTGGGCGTGAGTGCACTGTAAATTTAACACTAAGCA----TTGACTGTCACCG-AAGCTGCAGCATGAGAAGGAAG--TCCTCACACACGTGCCCAGAGAGTTCTGAC----------TTTTGTTGCTCT-CTCCTTTTGTCTG-----CTCCCACCAAGAGCCTTTTTAAATGTATGTGGTAAGAAGAAAATGAGCTGGCCATTGCAACAGATGTAAGCTAGAATCAGTAAAAGTGGGAACAATGGTTTGTATTAAGAACAAAACATT-TGGGCATCCTTTGTGTGTGACA-CAAGAAAAGACAACATTGTAAGCTATAAAATTCAGTATCTGAACATGCAAATAAGACGAGGTAATACCAGGATC--CTGAGTTAGAGGACTTTTGGCATTGGCTGGCAC-CTTACTCTCTAAGCACACAAT----GTCTCCAATGCTGTGCCAAAGTGAGAAGGACTTTCTGATC--TTGTGAGCATAGCCTGCTTTGTACA-ACTGAAGCTCAGACACATATTGCTCAGATTATATTAATAGAAATTCTTAATTGATATTTGATGAAACA--CAGTAAATAATGTTGTGGTGGGCTTTGTCCCGACAGCAGTCTTTACCTGGGAT----ATTGTAG---AAGATT------GAGAAGAGGAAGGCATTTCCTC-----AAGCCTGAAGTTTTGTTCTCTGTTTCTTTAGAAGTCTGGGGCTGAGCTGTTTCTTCT---------CTATTGAATTTCTTCCTCA-CTTTTATCCTTTTA-CTATAAGTTTTCTAACTTTCTTAAAATAGTTCCAGCACACCCTCTTTCCTCCCTAT------CAGTCTTCTATTGCCATCAGATTCAGGAAACTTAATATCCCTCACTT--CCTTTCATACACTC------ATGAAGGT-TGTACACACCAATCTTTAGGAGTG
s HiC_scaffold_1 136905687 2529 + 233722169 TAGCGATTGGAAATAGGAGGCATAAAAGGAAAGGGAAGCGTAGGAGAAATCGTAAATAATTCACTTTCTTCAAG-CTTTTGATTAGTTGCTAA----AATGAGAGA-TTAG--AAGTTAGGGATAAGTAGCTGCCACCAGTGGAAGACatggaaagaataagaaataagaagAGAGGTTCCGT-----------------AGTGTACACCCTGGAGG----------CAGTGATTTGATTATAACTAtatgatttattaattttgatttccTGGGCTATATGCCTAAGCATAAAGG----TAGGATATAATTCTAGGTATATTCAAATGACTTTTAGCTAGTATCTGTGAGTA---TTCATGTATAC-AGCAGAAAGTCTATATACCAGAGGATATTCCCCAGTTAGTTAAGTTAGTTGCAAATAGTCACAATTATAGTGAAAGGCAAGTATGTTATACATAAGCCTTATTTCACAAGAGCTTACAT-CTAATCTTCTCTACCTTCTATGTACAGCAATCCCA---TAGAAACAAACTACACCATCCCCAAAATAAAAGTGTCATTATACTTATTCGTGAATAAAATTCTTCTCCA-------TTTCA-------TCCATTTTATCTAAAATTGTCTAT---AAAGATCTACTTTGTGGAAGCTTCTTAGTGACTATGCACTgttatttttctgggaaaaacagTATCTTGTTAGTTAGCATGATAAACTGACCTTATTAGCTGGGAAATGAACAatactttgaaatttccttttactGTGTACCAAACATTGTTTGTCCAATGCATAAAAG--ATTTTATTGACCACTAATAGTCTCTTATTGAATTGAAACAAGGATTTAACCACTAGACATTGGTATGGTTGAAATACTTTAAAGGTGAAAAGTAAAGTACTCTGTTAAAATTAAGCACAGTCTTCAAatatatttgcttctttttatttcctcactAATTTGAAAAATGCAGCATTAGTCACAATGTAATTTagaaaatagaattaatttttaGTACTATAAAACAGGGTGGCCTGTAGcgccaacatttttttttttttttgatgctgatACTCATTCAGAATAGAGtgcttaaaagaaattaaattcaag-----aaaaaaatgtttcctcaGTGCTAGGAACCATAGGTAACAGTGAGTAGGAGTAGAAATTCTTTtacaaaaatgagtatctgaTGATTATGAAATGACACAGTT-CTCTCTTCTTTCCAGGG--------AGAGAAAGTAGAAGGTAAGGGAAGAAAGCACAAATATCTTTTCTAGTCAgtatgctgtgtctgatactctGTTGGCTGGTGAGggggagaaaaacaaagattatCACTTTAGTGTAAATATTCATACTACAGATAACCTTAAGAGAAATCAAGGCCagataaaaactatatttttttaCCAGAACACTATCTAAGTTAACTCCCCAAAAGGTGAAATAGTGTTTTATAGAAAATTTGGTCTAAGAAACTATAAATATTGATCCTAGAAGGACTTTGATACTGGG-----AAAAGTAAGTTCAAACTTGACTATAATTTAAGCTTTCTTTTGGAACAGTG-----ACTTTACTGACTTACGAAAGTTCATCTCATTGTTTCAAAACAG--TTTCCATCTTAACATGTTATTAATAATGTCAATGCTGTTTTATTCAGAGGCAAGATAGATGTGGCTGCATTTCAAAGTGAACCCTACGCGATAGTTAACTATTACAGTAACCTACCACAGGTGAAAGAAGCTTGCTGAAACAATAGTCTTCTATTTCCTGACATATATAGAGCTTTATTGTTCTACTAGTGTTAAGTAATAGTTTTTCACAAGAAGGCTTTTTCAATTTATATGGTCAGAAGGAAATGAACTGACCATGGCAACAAATGTAGGATAGAACTAGTAAAAGCAGAAAGCATGGTTTGTATT-AGGACAAAACACCATAAATTCCATTCATGTGTGTTATCTGAAAAAGACAATTATAGAAGCTGTAAAAATCAGGATCTGAGGATAAAAATATGACATGGTGATACAGGGGTCTTTTGAGCTGGATTATCTTTATTGTGGGTTTGAATACTTGCCCTTTGTACTCACGTTCACAATCTGTAATACATTGTAGAAATGCGAAGAACTCTGCAACCCTTTCTGATTGAGGCACACTTTTCTTAGACTgaagttcattcattttt--------ttatgtcAATAGAATTACTTGGCAATTATTGCAAGaagtgataatttaaaaatactgggTTGGGCTCTGTACTTTCAATGACCTTTAATTAGGATTAGGATAGTATGCCAAGACTACCAGGGTGAGGGAAGAGACATTTCTGCTCTGTGCTTTTGAACTTGGGTTCTCTGTGCCCTTAGAA-TCT-GTGCTTGTCTGTTTGTTCTTGCTTTTAACGTTTGAATCTTATCTTCATCTCTTATCCTTTTGCCTCTGATACCTCGCACTTCCCCACAGCTGCCATAATA-------TTTGCTTCTTATTCTGGCCTCTCTTCTGAGGCTGTCTGACACAATATTCTTATCGTCCTTCACTTAATCTCTTCTGCACTCTAGCATCTGAAAGTCCACACACGATGCTCATTAGCAGTG

a score=23071
s chr3           150320606 1365 + 160039680 ATGATCAGAGAAAATAACAGACAAAACAATAGGTTTTATTATTTAGATTTATCATTTAAAATACAACTTCT---------TAGTGCACTCTAGACAATGTACGTATCTCTCATAATTTATTTCTAGTACCATTTTCATAT--AAAATTGAGT---GACTATGGAAGAATGTTGATTTAAGTGACCACTATTAACTCTAAGCAATTGTGTTTGACAC-TGACAATCCTAAT---TATTGTTCAGTAGCTTGTTTATTCT------CCATAACAACTCTATAAGTGTC--TGCTACTAACTCTATGAAATAATGTCAGTGAATTTTGCATTACACTTTT-CTACATGATATCATCTTCCAGTGAAGTATTTTCAGCACCATTTGTGTTTTTGTA-AGATATTTTTGTGCCAGAAATTACTAAAAACTGCCATGTATTGGAAAC-------AAAGGAAAAGAGAACAAATCTGTTCTCTCAAAGAAGGTGTGCAA-ATGATTCATTGAATAATCTGGCCCTAACAGAATGCAGTCTTCCTGGCCTTTGGCAGAGCATAGGGTACATTTGTCTTTGGGAATGAAGTAGGGCAGGAAGTCTCAAGGGCTTATAGAGGATGGAATATCTTA-AACTCAGTGCTACGCAGTTCCCCTATAGAGAACACAGGTGTCACAGAAGAAACAAGCTG-TTAGACTTTGCAAATTCTACATTATTTTTTACTGTATTGTTTTTCTTATTTGATAAGCTGTCAGTGTGTAAAAAGCACACAGAGAAATTTTGGTAGAAGTCGAGGAAAGGAAACAGATAAAATAAAATATCTTAAAATCACTGTGCTGTAATTTGCAATAATGTATTCATATAATAATCTGACTTGCAAATTTTTACGGCGTTGCATGAGGCATTGAGATTTATTTCATAGTGGTCATTGCTATCACTAAACAAACATTCTTCAGAA---TTCAGAAATATTAATGGCATATTCCAATCTTTTCTCTATAACTTCTTTTTATGTTTACATAAT--------------AATGACGACCTTTGAGATTC--AACATCCTATGGGTCTGAGGGCTGAAATGTTTAATAATATATATTATTGCTAAAGATATATAAAAACATAGGTAAGGAGAATGGTAAGGATGAGTGCATTAGATTGCTGAACTGCACAATTGGAAAGCTATAAGCTACATTTTTTTTGTATAAATCATTTAAGTCAACACAATAAACAAACGAGCTG-------TGCATTGTACTGGCAGTACTTAAATTCTAACTTGCCACATGCAGTAGTGGCTGCCACAT---ATTTGGCATTTTGTTCACCTTTACCAGAACATCATGAATTCCTACTGGGTAGTGGTGTTGTCTAGTTATTTGCAC--AAAGTTATAAAATGTATGGATAACTGCTATGTAGAATATTTTAATA
s HiC_scaffold_1 136914707 1356 + 233722169 acaatttGAGAATATGACAGACAAAAGacta--ttattttattgaaaaaaatttttaagtataca-TTTCTGGAAAGCAGTAATTCTTGTTAGA-AATATAATTGTACCACAGTA---ACTTTTAGTaccatcttcaaaataaaaattgaataatggctatgtaaaatttttttcttaaatgatgacta---attttaagtaattttatgtACCACATGTCAATCCCAGTGTTCAATTTATAGTAACTTGGCTAGTCTGAAAAATcatagaaa----ggaaattttaatattattaactCTAAAAAGTGAC------------TGAATTACATTTTTTCTacaataattcat-------------------------atatatatatatatatatatatatatatcctgaaaaTCACTATAAAATACAACacaaccaaaaagaaataaaaaaaaaaaaaaaagaaatctagtccctgaaaggaagaatgaagcatatttttaaaaataatttggcgGTGAATGAACTTAGTATTTCAGGTGTTTGGCAGAGCATAGAAAGCATTCATCTTTGGAGATGCAACAGGACAGATAGTCCCAAGGGCAGACTGATGGTGGAATCTTTTGCAACTCAGCACTACACAATTCCCCTGTAGAGAGTACATGTGCCACAGAAAAGACCAGCTGcttatattttcctaattttagaaatttttctacATTACTATATTTCCAATTTAATAAGTTATAGATACAcaaaaaatacacacagaaatTTATGTAAAGACAGAGAGGTGGAGGCAGG-GAAATGAGATGG-TTATTATGACAATCTTCTGACTTGCTAGCAtctattt-taaagttatataagTCTGAAA---TCATGGAATTAAGTGGGATATTAG----TTTTTTATAGTGATCAATAATATCAATACCCAAAATATATTGACAAATTTTTAGAGCTGTGACTGGGAAATGTAGTTCTTTTACTTCTACCGTGAATCTGTGACCTCACAATTCCATTTTGCAAACAATGA-AACATTTGAGTCTCTTAATATCTTGGGTATTCGAGGAAAGGAACATGTTATAAT-----------TTAAAAGGATGTAAAAGCACGTAAAAGGAGCATATTAAAGAGGTTTATATTATATACTTGAACTACAAAACTTGGTAGCCACTGGTCAT-TTGTGgctgtataaataaatgta-taaataagatttaaaaactttcttCTATTACTCCACTGCCCAGATGGCAGTTAAATTCACATTTGCCACATGAGCTAGTGGCTACCATATTGGACTGCACAGATAGTGCACACTCCCCCTAGTGGAGAAAATTTA-ACTGGACAGTGGTG--ATCCAGAATTTCACacttaaaactgtaaaatttatAGTTGATTACACTGTAAAGTCTTTTAACA

a score=10269
s chr3           150328413 1023 + 160039680 AGGGACAAATAACCTGAAATTGTATCAAGGGCTTCTACCCACTGCTGGTTATTTCTCTACTAGTATAATGCCAATTTAGCCACAGCCCTTTCCTTTGGTATAGGCATATTATTTTAA------------------------------CCCCTAAAACATATATGCAAGAAGGAAAATGTTCTTAGGAAAACAAGTTTAC--TTAGGAAATCATTTCCCCTTGCTTGTAATGGTAAAATACTTACATTCTATGTACCAGTCA--------GCTGAAGAGATA------TCAGAGAAAAAGATACTAATTTGGCCTTTGATTTTTTGATATCTAGTATTCTAAGTCAGTAAAATTGTATATTCTGAAGTGAAGGACTA-GGTATTTTGCA--------AGAATCAAAAAT-------TGCAGGTTTTTAG--TTCACTGTGTTTGG--------GATACTTTTGTTTATAGGACCTTCTCTCACTTTCCCTCCCGTATAGTATTAAGCAAAATC---TTCTGAAGATTGGGTTTGGTCCTGTACAGAAGAACAGAGCCTATATCATTTGTCTGTATCAAAACATCCGTTTCATACTTGGCCTCCGAGGGGGAGATCATCATACGTGTTTACCTGGTTCATTTTAAATTTAAAATGG-CGTGGTGTAGCACTGGAAAATGTGAGTC--AAAACCAAACCAAGTCTGTGCTACTCACAGAGAAAAAAATACATCG-----------------------------------------------------------------------------------------------------------TTACAAAAC-AAATACAGAAG--------TTTAGTAGAATGATAC-ACACTCT----------------------------------------AAAAGATGTTTATT-GTTGCCTAGGGGAGACCAAGTAATGTTGTATACATGTGAGACATATTAGAAAAGAACAAAAGAGATGTTTCT-TAATTTTTAAATTATAATCAAGGGAGATG---AGGAAGCATAAGCGTGAGAAACAAATACGTTTTCAGCTGAATGTAAGATGTGGTAACGTTTATGGGGGTTTCAAAAGGAGAGTAGAGTAAAGGTGGATTTACAGAAGAAAAAA----CTGTTTTAAATACCTTATAAGTAGGAACTCAGACTAATTGGCCTCATAGGGAAGACACTCAATGAAGCTTAATAATG--TTGGATGGAAAAGGAAGCAGCA
s HiC_scaffold_1 136930242 1213 + 233722169 AAAGACAAACATTATCAAACTGCATTAATGACTTCTGTCTGCAG-TCTTCTTTTCTGTAACAATACAAT--TAATTTCCCCACA--CTTTTAAATgtacataaataaattattttaaatgtacataaatAAAGCACTTAAGTTTCAATTCCTAAAACTTGACCTCATGAGGGAAAAAAGTCTctgaaaattaatttgaaagctagaaaatattttt---ttgactTTGGTGATACTGTACCTGTTATCTATAAATTGACCACCATGTTTACTgggaaaataaaaacctaaataatGAAAGCACAGATTTGTCCATTG------------TTAACATTCCAAGTTAGCAAATGGGTGTGCTTTAAAGATAAGAACTactgtatttaaaataatctttaaaagcaaaaataattttatgtagttTTATAGGGCTTCCTAGACTTggtgaaaaaaaata-ttctatttttctggtTTGTTATCACT---------GTACAGTTCCAAGCAAAATGAAGTTCTGAAGACAGAGTTTGGTCATGTATAGAAGACAGATAAATAGGTCAGATATTAGTGTGAAAGTGGTAATTCCATGTTTGACTTACAAGGAAAACATCATAACAATTGTTTACTCCTTTAACTTCTAACATGAAATGGATATAGCGAAGCATTTAAAAATGTGGGACAGAGAACCTAAT--GGTTTTTAAGATGTTCAGTGAAAGAAATCCACTGCAGTTAAATAGTAAACCCACCATAAAATAGCAAGTAATGCCAGGGATATATTCAATGGCACtgcgcctgcccggcaagtgtgaggtggtgagtttgactTTTgataccaacaaaacaaaacacaaaaacaagtaATTTTGGAAGGAAGAGATAACGCTTTAACATTGTTTGCATTAGTAGACAGTATTATCAACTCAGTAAAAAGATATTTATTAGATGCTTACAAGAAGCCAAACAATGCTCTATGAGCTT--GgtatatcagaaaagaaaaatatgactaCTCCCATAGTGTTCAAGTTATAACCAATGGAGACAGACAGAAGGCATAGACATAACAAATGAcagcatttcaaaatatata-aagaggtATTAA-----ATGACAG----AGCAGGAGAGAAAGATAAGAATAGA--TACAGAAGGGAAACATTTCAggtttaagtaa---ataaataagaactcAGATTAGTTGACA-Catacagaaaatac------aattttaataaagACTGGGATGGTGAAGAAATCAACA

a score=21538
s chr3           150330763 3151 + 160039680 TGAAGTAATGAATGTTGCTTATTTCCTAATCCAATCTAAGTTGATGAC---CTCTCTGTCAACAATAGCAACTTGATTGATAAAAAGAG-CAAGGTTCCTATGATCCCTTATTACTTTATTCCCTCTGGATAAATATAGTATTCATTTATCAACACTGTTACCCTCATTTCCACTCTTTTCTCTCATTCTCAGCTTAAATCCAAAATTTA-AACAATCAGATATCAATTACTATAAATGAGTGTAAATATTTTAAGC---TAGATTAGTCCTATAATCCATTTTAAA-ACAGCAATCAGCCTGGTAATATATTACTTACAGCTGT-CTGTTAGTAGCCATCAAACTCTAGATTTGATGGATATTCACAGAGTGCAAACTGAATCTGATTATTCCTTTGTTCTATTCTGTGTGTTTGATACTTTTATTCCATTTTAACACTTTAAATAATGAGGCTAAAAATATAA-----TATATAATTCAACATTTAAATTCCTGTCATATTCATTAATAGATCATCATGTTTGTGCTCAGTGTATGCTATTT-TTCTTAATTTGGCTTTAGATTATTGAGTTATGTAAATATTTGTGTGCATTCATTTATACTACAGAGGCTAAGCACACATCTGTATGAATACACATGTTATAGATTTCCAAAACTTAGGTCA----TTATATATA-ACAGTGAATATTCATTTAGTGCCTAAATAAAGTAAGGCTCAGAATTATCGCACAATAAAAGCAACC--CGATTTGAGAGTCAAGCTTCACCTCTAGTATCTTATACTTTTATGTACTAGGGACAAGATATTTCAAAACA----------TCAAAATCCACTGTCTCAATTAATGAA----TTTGGGTCTGCACACACAGCATAGTAAGCAAAAGGCCTGTTGTATGAGCATAA-------GGATTTGCGATTGAACCCC------CAACATC----------TGCACAAAATTCATGCCTACAATTCCAG--TAGTgccagcctagtgtaaatg---------atggtctagaagtacaataagagactctg-tctaaatattcaggtgggaagtaatgtgtaaggcattcaaactcagcttctgTTTTTTTTCACGCTTATGTAGAAGCAAAATACTCAGC---CCATAGATAAACACAG-----ATAATGAAACAATAGAAACTGCTTCTAATAT--CCTTAAAATGCCCAGCACAACACAGTGCACCA----ACTGAACTTCTGATAATGTCACGAGTT---TGTGAAAGCAGAACTGGGGGTAAAGAAACTATAGCTCTTTCTTAG-----TCTGAGGTATTTCTGCCTTTTCT-TAATTCGTATTGCAACATCACTGTTTAAACCGTATACATGTAGAATTAAAAT-------TTAAATACACAAtttgtttctattctatgtgtgtgg------tcatctgtttctatgtatgtgcacat---gctatgtgtgtgcctgttgc----------acacagagaccagca-gatgacccctggagttggagtaatagccagattggagtctgatatggtctagaggaaccacaacctgaccttgtgcaagagtagtaggcatcgttaacTTTGGATCCTTCATTTAATGTTTTTCTTATGATTTTCTAATGTGTTGGTCTTACAGCTCTACAAAAGAAAATTGTGAAATTCAGGAAACTACTCCTCTCCTTCTAAACAAAACAAAAACACCTATAAAAATTAAGCAGTAGTTTACAGTAACT---ATATTCAACATGAAACACCA-TTTTA-------AAACGTAACTGA---AAAATGAGATTGAGTTAGAGACAGACTTAACACCTCAGGTCTCCAAATCTTCAATCCTGATATGTTCCACACACCCTTCGGATGAGA-GCAATGTA-CTAACTTTGCACTTAATATGCATATTTAAGCCTTCTCAAATTGATCCAATACTCC----AGTTGATGTTCTCAAAGCACA----TTTATATTTTGTATA-GCCTAAGAGCTTGTATTTATCCAGAAGAAAGATTGTT-------------------TTCTAAGACTTCACAAGGCCT------AAATTAGACAGAAGACCAGAGAGCAATGGGTAGTCCACACTGTGTTAGTTTCCATGTTACCT-TTTCGCCTCAGTCCATGGGTTTATTTGCCTAATTATTCCCAAGATGCCCTGGTTTGAAAT--TCACTTTCTACTAATCATTGTTTATTAGGGATCAGGAAGTGCTGACCTTGTAAGCTCTCAGGAGACCCTTTCCTTATTACTAAAACATGGCCATTTCCCCGGTCCTCCACAGAGGAGGCTAAATTTACCAGATTCCCAAGTGGAGCCCTAAACTGAGTAAACAA--AACAATAAAAAAAAA-------TAGGACTCTGAACATCTTCAAGTATGTCTGCCCCTGTAT--------------GACATGGACCTGCCTT----GAATTGTTAACAGAGATG-GGATTTTAAAGTGCGGGTAGCTTTCTGTTTATACTTTAAAATGCTAATAATGAAGTTTGGAAAATTTTTTAAATAAAAGACAATATAAAATGGGTATATGCCAAGTATAAAAGTATAC--TAATATAATTACAATGTTACTTTTATGGTCAAAGTGCGCTATTAA-AAATAATATAGAGGTTAATACTCATATTTA--TTGTTATATTGCATACGGCATTTAATCTGAAAACCAACATCATCAAGAATATCACGAAGTGATGAACCAAACGAATGAATTTAAGTTTTGGCTGTATAAAACAAAGATTTATTCTGATGTCCTCAGAAGGGCAAAGTAAGCTGGATAATAGCTGATTT----ATGGGTCCTTACAACAGTTTGTAGCTCAAAACTTACACATCCTTTGCGCCTGAAAATTTTCATATG-TATCTTTGGAC--TAAATGACTA----CAGATAAAA------------AGGAAAGA------------------------CTGTATTGACTATTGTACCAA-------AAGAAAGTACAGTGTGCAAATGTTACTTTATATTAATGGATCTTGCTTGATGTTCAGGAACATAGTTGTATAAATAATTTGTGTAGTAATTTAGAGTTTACCTATGTATGCAAATAAATGA-TGTATATACAGACATGG---TTAAAAGCTTTAAAGATTATGTAGATTGCTAATTGTTTAAATGAATGAAGTAAAAGACTTGATGTTATATTTCATCCATCTTGCTAAAGCTGGTGGGTAGATACTACACAGCGACACACAGTATTCTTGTACTTAGAGAGCCATAACACACTGTTAATAGAATCTAATAATGTAAGTAATTTATCgtcataattttatttccattgatatg-ataaaatactgagaaaaaaataacaaa
s HiC_scaffold_1 136932502 3139 + 233722169 TGAATTAATAAACATCA-TTATGACTAAATAGAGCTTGAGTTGATGTCTCACTATCTGTCG-TACAAGCAGCCTGATtgttaaaaagaatcaaagattCAATAGGTgttttggccattctttccacT---TAGATCAAATATTCAAATATCAGCAATGCCGTTATCATTTTACATCTCTCCATTTACAGTTGGACTTAGTAGGAGATTTAGAACAATTTAATATCAATTATCCTAGAGGTGTGCAAATATTTTAAGCAAGTAGATTAGTggtttaatccattttgaatacAGCAGTTAACCTGGTAATATAGTGTCTCCTTTTTTTCTATCAGCAACTATCAAAATCCAGTTTCAGTTTATATTCACATAATAGATGTCACATCTAAT-ATTATTTCAATTTATCCCATG-GCTTGGTATTTTCACTCCAATTTTATAGATTACCAAAATGAGTCAATTATATAACCCATTATATAAGTCAATGTTGAAATCTGTAGCCTGTCTATAAATAGAATATTACATATGTGTTTAAAGTGAAGTATGGATTTCTAAATTGATATTTAATTATATCATTATGTGCATATATTTGCATGTCCATTTTGATGATAGA--------------------------------TGTAGATCAGTAAATTTTAAGTGAGGGTTTAAATGTATAAAGTGAAA-----------GCCTTAGTGATGTA---TTCACTTGTATTTTATGA-ATATGCTACCATCAACTTTGGTGTTCCATTCCTTCATTTCAGTCTTAC-CTTAAATGCAC--AGggcagaaaaatgtaaaacaaccTTTAAAGTTAAGATCTAAGATATCCTCCAAAAGAAAGCTTTGAGTTGAGAGATGGGGCCTGGT---CAGAAGGGTTCTGTCATTGGGATAATTTAATAGAGCATATTCTTGGCCTCCTTTTCTCCACTTCCGGGCCACCATGCACTGAACATGTGGCTTT--TTCAAGCTTGGAGCCTGCGTACCATGGATTGAATCCACCATAGCTGTGCAGCAAAGCAAACCTCTCTTCTCTAAGTATT--------GGGTAtcatgttgagtattttgtctcagc------------------------agtgagaaaataaCTAATGCACCATTCAGAATCACAGTCAAGATAATGAAATCATAGAAACCagttttaagataattttaaaaatttaatgtaaaaataatgtattatttgaTTGAAGTACTATAAACTGCATGAACCACATATATGAGCAAAATTGGCAGGTAATatgcataaaatgtattttagggACTTATaaagtatttctgtattttctataatATTCCTTTAAATATCATCACTTACAGAAACTACAGTGATACCTCAAATCCCTATCTCAAATCC-CTGCTTGTTA--ATCAGAAGTGTTTGGCAAACTTTGGCTGCTGCTCAAGAGCTCCACATCAGGTGATGAACATGACAGCAGCCATCTTGCTCACACAAATAACACTGTAACGATCCTCC---TCAGAATCATGGAGCGAATTAAGttt---atgaacca-aggtaccac-----------------------tgtatatcaT--ATGTTTAATCC--Aagttaatgttt-------aattttgta----gTTACTCAT-----TCGAAACCAAATAGCAATGAaattaagtaaattatttttc-ctttacaaacaaaataaaac----------agttga--AGTGATTTACTGTCACTTTCACAATtaacaagaaatgtaaattttatttatttacatttaatttatgtAAATTTGAATAGCATAGCAGTCACATTGAGTAATTCAAGCTTTCAAACA-------CTGCCATGTTCCCTATCTCTTTTAGCTAATATGCATTACGGCTAATTGTCTGCTCAGTAACTTTAATCATAC--TGTTATATTggtaaaatattatgaaaaacatATTTCCTCAATAGATAATTATTTACGTTTCTTAAACGCTTGAGA--TTACATTTATCTA-AAGGCAGATAGTTGAAACCACATTGTGCTAAATTGTATGACTT-----GGTCTCtaggaagataaaatagaagGATAAAGAG---------ATaaacattaaattaatttatatgtgatctgttttcCCTTAGTTCCTGTGTTTATGTGCCTAATTGTTCCCAATGGGgtggaattttaaatattcattttc-acTAATCAGTGTTTATCAGAGATCAAGAAGCACTGACCTTCTAAACTCCCCCAAGATCCTCTCCTTATTACTGAAACATAACCGTTTTCCAAGTCTTTCACAGTGGAGGACAAGCAGATGAGATTCCCAAATGGAAATGTGACACAAGTGCACAaacaacactgaagaaaaaagacGACTAAAACTTTGAACATCTTCAGCAATATTTACTCCATCTTACTGACGGAGGGCAGATATATCTCTACTTTTGTGTAACTGTCCATAGGTTTGAAGGTTTGTAAGTACCCATAAC-----ATCTGTGCTTTTTAATGGTGTAGATAA----CAGAAAACGTCCT-----AAAATCATCAATAAGGAGGTAAA----AACTATAACAATATGCTGTGATGAAATTCCAGCATCACTAGGGTTGCCCACTGGTAGTATTGCTAAGTAAAAGAAAGGGT-ACATGGATGGTAACCTTGTGATACTTCA----ACAGTCATGTTGATGACTGA----------AATGTCATCAAATGACAAACAA------------------------GGACAAAAGGATGTTTTAT----ATTTCATCGGAGAGG--AAGGAGGTTGAATGATGTGTGGCTTCATCAT-GCTATTCAGAATGGTGCGTAA-GGAAAACTTATGgactgtttatttttgaaaatttccatCTTCTATTTTTGAACAACAGGTAATTATGAgtaaataaaaccacaaaactgTAGGAAAAAGCCCTAAAGTTAAAGAATGACTCCCTCTATTGATCTTTGAGTCAAATTCTCTAATGAaatgtaatatgtaa-------tatatccTAATTGTTCCTATTTGATATTCAATTGTATGCCCATATGGACTTCTTTTGTA-TACTTGCAATGCTG-----GTATGCCAACATGTGGCTACCTGAACATACACAGCTTTCCAAAGTTACACACATCAGTTAA--CATTGagtatttaaacataaaaagtaaGAA----GATGAT-TGTTTTACCTACTTTGCTAAA--TATTAAATGAATGTTTCATGGAG-CATATGGTAGATTTTCCCTCTAGGAGGAAGAACAGAC---TCATAGAGGTT-TTAATATAggttgagtatatatatatatatatatatatatatatatatatactatgaaTAAAAAAGGAGCCAA

a score=61655
s chr3           150343715 1671 + 160039680 CAGGCAAACAAAACACAATCAAGAATCACC--GATCCACCACTCAGAAAGGTTCTACTTAATAATGAAATGCATGACCTGAACAAATTAATAAAGGAACAGTAATTTGGCAGGTAAAATAAATTAATTTTACATAGAAATAGCAATGTGCTTCAGGTAGGCTAATCTATCTTACAGTCCAGCCAATATTTCACACTATGATGACATGTATCCATTTTATATTCCAGGGCTGTACTCAATACAGGGAGGGCTATGCTCATTCATCATCCTGGTACCATAATTGTACTTCCCAATTATGCTTCTTTGGGGGGTCTTTGTAAGAGAAATAGTGGCAATAGACACCAAAGCTTTAATTAAAGAGCAAAATATATGAGTGCTGTGGCTGAAG---AA--ACACCGTGTACCATGAATTTTAACATG----------GATGTGGTG--AAGACATGCTATTAATTAAT-TTTTTTGGCCATAGATTGTTTATAGTCTTTAGGTTATTGTGGTTTTCTAAACAGCTTAATCACTTACTTTTGAATGTTACCAGAAGGAGGGAGGTGTGACA---TTAGCAGTGAGAGGAATAAAG-AAATAATGAA-----AATCGATTTACCTCCTTTCCTGTATAACAGTAACCCAGTTGAAAACTTAAGT-GAAGGCTGTCTATCTG-GGGGTTCCTTTAGCTACGCTAAATCCTCTTAACAATATTCATTTGCTCTTA-CCACAGGAGGACCATCTTAGTTTCCACTTCCAATGAGTTCATTGCTATGCAGTACAGACGCCTCTggaaggtagtgttcacttcacagatgaagaaagcaaagagtaaaga-------gacctgttctcttgcctagggttataatataagttagtggcaaaatgcatattaaaatccaagtctccagagtcccagtgctttAATTAGCTTAATAATCCATGCTAACTTTCATGATTGTTAGGGCTTAGGTTTTGGTATTCTT-AACATTGTTCTCAACACCTATGAAAAATGGCTGCCCTTCATAAGGTTAATATGAACTCTGAGTTACACCAATTATGCAAAGCCTAATCTTTGTTACTTATCCACCTCCATGGGTCTTAGAGCAGTTTGGGCATGGTTCCTTATTTTGTATTCAAATGAGCTTTGCT-GACTTCTATGAGAATTTTCCTTTAATAGTATTAACAACAAAACAAAACAATTAATTAAATGTTTCCACGTACAAACTTATAATGAAGCAATAATAATTGTAACTACTGTAATAAAAATCTTACTATTCAGGGACTTGTAGACACCTGCGTCCTCAATAAGAATTGGGAGAGGTA-TTAGTTCTGTAATTTTTTTTTTCAAAAAGATTACAGCCTATGACTGTTTTTTGTTTCTAATGTCAATCAATTTTCTAAATGATTAATTTTCTATTAATAGAA-----TAATCAATCATTGATTTGAGAAATAAAAGATTTATCAAAATTCTTCATATATATAGTTTTCTCTCAGTTCCATTTTTACTTATT-TATAATTCATACTGCAAATCCCTGTATTAGTTTATTCACATAATTATTTGGTTACTATGGAGTCAG---CTAAGGGGAGTAAAATT--GGGAAATTATCTTAAGTTGCATTATAATTAATTTTT-------TAGAATGTCTACTGTACATGAACTTCAGATGTAT--GTAGAGATGAAAAGTTTTTCTCTCAAGATGTATTATAATGAA
s HiC_scaffold_1 136940242 1671 + 233722169 CAAGCCAACCGAACATAATAAAGAAATGCCTTGCTATCCTACAAAGAAAAGTTCTTCTTAATAATAATATGTATTACGTGCACAAGTTAATGAAGGTACAGTAATTTGGCaggtaaaataaattaatttt-----------gcaaTGTGTTATAGGTAGGCTAATTTATCTTACACTCAAGCCCATATTTTAAACTGTGCTGACATCCATCCATTTTATATTCCAGTACAGCACTCAGCAGAGGGAATGCTGTGGTCATTTATCA-CCTAGTACCATAATCTTACTACCCAATTATGCTT-TTTGGAGGCTCAGT-CAGAAAAAACAGTGGCAATAGATATCAGAACTTTAATTAAAAAGGAATATATGTGAGTGTTTTGGTGGGGGTTCAATTACACATTGCATTTTGAAGGTAAATATGATACCTTCATGATATCATATTACATCATGATATTGATGAATATTTTCTGCCCATACATTGTTGCTAATTTTAAGTTTAGTGAAATATCCCGAACA-CTTAATCAGTTACTTTTGAATGCTCT----ATGAAGGAGTCGTGATAAGGTAAGATGGGGGAGGAGTGAACCAAAAAATAAAGCCCCAAGTGATCCTTCTCCCTCTGTG---AACAGTAAATCAATTGAAGAGGTAAATTGCAATCTGTCTACCTGCAGGATTCTTTTAACCGTGttaaatctcttttattttattcatttataattatCCTAAGGATGCCGCTCTTATAGGATATTTCATATTGGTTCATTACTATGCAATGCAACTACTTCTGGAAGGTAATGTTCACTGCACAgatgaagaaagcaaagaataaagaataaagagacCTGCTCTCTTGCCTAAGGTTACATTATAAGTTAGTTGCAAAAAGTGTATTAAAATTCAGGTCTCCAAAGCCCCAGTGTTTTAATTAGCTTAATAATCCATGCTACCTTTCATAATTGTGAGGGCTTAGGTTTAGGAATTCTTTAACATTATTTTCAACACTTATGAAAAATGGCTGCCCTTCATAAGGTTAATGCAAACTATGAGTTACACCAATTATGCAAACCCTAATCTTTGTAAGTTATCTACCTCGAGGGTGCTTAGTGCAGTGCGGGCATGG-ACTTTATTTCTTATTCAAAAGTGCTTTCTTCAACTTCCATGAACATTCTCCTTTTAGACTattaacagcaaaacaaaacgaTTAATTGAACGTTGCAACATATAAACTTATAATGAAGGTTTAATTATCCTAActttattaataaagaaattaatattcaATGACTTCACCATGGTTGCATAGCTAATAAGAATTAGAATGGAAATTTAATCCTGAGACATATTTC-----AAAGATCACAATACATGA----TCTTTATGTGTAAGGGCAA-----TTTTTACACAA-AAATTTGACACAACTACAAAAATCTTATcaacaaatggatttaaaaat-gtatttttatcaaaaattttc-----tatagattcattttcatttggttttgatttattctaaacctcattc-----attctttcactaatttacttaaa-----atttcataaatattgaGCTAATTCCTGAGGGCA-TAAAGCtaagggaaaagattttaaattgtGCTAGTATGATTTTCTAAGTAGCTAATATAGCTACATTAACTG-ACTTCAAATGGATTAGTCAAAATGA------TTTCTCTCAGGATATACTCTATTTAA

a score=28467
s chr3           150351723 2112 + 160039680 ATCAGGGCTGCTCACTTGATCTTGAATTGCAATG-----AAAGTCAGTCCTTAAGCAATTTAAATGAAATTAGTTTATGCACTTAGGCCAAGTGGCAGCCCACTGTGGAAATGGAAA-----------CAGGTCAGTTTCCAGCTGCCATCACATAGGGTGACAGTGCAGATGAGGGACCAGAAACTACATTACAGCCACCTGAGTCAAGACAGACACTGTCAGGCTGCTGTCA-----GAGAAGACACTGGAGCACTGACCTCATCGTGA-----AAGTCAAGTTTGCAGGTCACAAGTTGACTGTTGCTCTCTGCTC---TGTCATTTGTCTACTCCACGGGCACATTTCCTG-GGTACAGTTACCTAACATTTGATGAAAACGGACATTGAAATGGAAA-ACTGGAGTGGTGATGAATTGTATGAGCATTTTGTGGAGCAGTGTACAGTCGACGACGGAGAGTACCCTGAGGAAGAGAAACCTGGGATGCGGTTCTTAAGACAATATTTGACTTCTCAGTGAATTTGCCTAGTTCAGGGCCTTGGATTACTCAAGAGATAACAACTCAGTGGTAGCCTGCGAAAGCTGTGTCACAGGAGCCCTGCTGCAGACCCAATCTCCCACTGTGA--CTTCACAGAGCAGCTCAGCCTAAAACAAAGAAAAACAAATGCCCATGAAAACCCAGC-GAAAGGTCACAGAAAGGAGAGGCAGAACTCATTAATTTTTTTCC--AGGCCCGAGGGTTCATTCTTTAAAATGTGTGCCACATTGGCACGTGCTGTTCACAGAGCGCTTTTCTTTTGTTTGAAAGCTTACCCTCTCCAGTTTGCCTTACCC-AGTG-CTGGCTGCCCTTCAGCTCCATGCCCTGGGGTTAGCTCAAGCAGCCTTGCAAATTCAAAACCAGGTG-ACTTTGTG----------------------------------------------------------------------------------------------------------ATTCAGCCCAG-GTGGGTCTGCCTCATGACAGAGTTTACTCCTTAAATAATTTTATACTGGTTAATTATTCATCTAAAATAGAAGTAAGTGCAAGCAATAGAATTCACATCATCACCTTACTAGGTAAATTCTTTTCTTTTTGATAGCTACAGCATTTTCATTGGAC--------TTTTGGGAAGAATCCCAGTAAATTATTATCCCTGATATCTACATGTCGGTTCAGGCATTAGAGTCAGGTAATGAATTTGAAGTGGTACATACCTAAATTCGGACTTTGTTTTGTCTCCCTCGTTAATTTCTGTCTTCTTTCTCCCTGTCTATCTCCCCGCTCTCCGATCTCTCCCTCTTTCTCCTGTGTGTTTA--GGTGCTTTATGCTTCCTTCACTtgcagaggccagaggaaggtgtcacagcttccgttctgtcactctcag-ctttactccctggggacaggatctttccctgcattagatggtggtaaccaggtctagtctattgtcctgccttagcctctgacagagc-aggagttagaggtgtatgtgtgaccatggggctttgtatgtgggttctgaagatcaaattcCCAAGCCTATGTTTCATGTTT-----TCTATCAGGTAGAGGAGAGGGAAATGTTGGAGAAAAGCTAGAGGAGGAAGATCGTCTAGGGGAGGAGGAGAAGGGAAAGGAAAAGAATAGGCTAAGTGTATAACTGTCCGTTTCCCCACTCACTTAGTAACTAACAGTGCCCATTTAATAGTT--------TAAAGATCTTAAGGACACACATTCAGAGTCACGAGTCTCCAAGTATGGGTTTAGTTTTCTACCCAGGTCTTTA---------------------------------GGTA----------AAAACATTTTCAGAAAATATTCCATTCTATTTATCAGTGGTAT-TAAAAACTTTTAAATGTAATTAA-ATTTTGCCCTTgcaacgtaattagtatacagcatcattatgaaaatactgactcaaaatatt-----ggaattatttccaagtctgcttg-taagtcgtgtttattgagacattgttggcaagcttaatgactgtcattattggcaaaatcaactggtaaaaatccatagatccaactggaagaagtgcagattgcctgcatttgtgatatcttgagattcatatttcatgcttatgcaataataatgcaaatatttt-atagatttctaactgggaggttttgagtttctc--attttcatcagctattcttttatg----aaaatgacttattttaacattt
s HiC_scaffold_1 136945815 2063 + 233722169 ATTAGACCTATTCTCTTAGTCCTCAGTTGCTGTCTATCCAGAACCAGCCTTatgaaaaatgacaagaaattaaatgataaccTTAGATCAAGCAGGTAGCCACTATTGATCTGGGAAGGAGTAGATTCCAAATCAAAGCTTAGTGGCTACTGAGCAGGGT-AGAGTGCAAAGCAGAG--CACATGCTAGGACAC---TACCTGG--TGGGGCAGATATTGTTA--CTTCTTTCGTGTGGaataggagactgaggcacaagtCTTATAATTAGGGCAATGTCAAATTATCAGGCCA-AGGTT-----TTGATCTTAGGTCCATTGTCCTTTATTTTCTAC---------TCTCTTGCAATAGAGTAACCTTGAA----ATGAAAACa-------agatgaaaacacagaaaaaatacccAGTTAAATAGGCTCTT-----ATCTATTCaaacttcaaagagaaaaaaaacacatagaaaaaggCTACGGGTTGGAGTTTTTCA-ACAATATTTGACTTCTATG-AAATTTGCCTAGTTCAGGACCTTCGATTACTCCAGAGATAGGAACTCACTGGTAGACTGCAAAATCTGTGCCATGAGAACAATTTTGCAGATTCACTCTCCCATTGTGACTCTTTCCAGAGCAGCTCAGACTAAAACAAAG-ATAACAAATTCCCATGAAAACTTAACTAAAAGGTCACAGAAAGGAGAGGCAgaactcattaattttttttccagggCCTGAGGgttcattctttaaaatctatGCCACGTTGGCACGTGCAGTTTGCATgatgattttcttttgtattaaagCACACCCACTCCAGTTTGCAATACCCTGGTGCCTGCCTGCCCTTTGGCTCCATGCCCTGTGGTTAACTGAAGCAGCCTTGTAAATTCAAGA----ATGCATTTTGTGGGGGGGggtgagaaagggagagagagggagataaagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaattc--tcCAGTGTGGACCTGTCTCATGACAGCATCTACTCCTTAAATAATAGTACAGTACTTATTTCTT-ATCTGAAACAAAAATAAGGTGAAACAACAACGCCCACATAA-----ATGGTTAGTACACTGTTAT-TTACAAATGGTTACTCCTTGTAAACTGGACGTATACAGCTTCTGTAATGCTCACACTAAACCCCTCTTCCC----------------------caaaaaaggcag--aaagaaaaaaaaaaagtaaatgatcaG----------------------------------------------CCCTG----------------------------------------ATGTTTACTAATGATATA----------------AGACAGCATGGAAAGGATTCATA---TCTGGCCTGTA---TTCAGTCTTCACTTCCTG----------CTTtctat-taataaatga--------------aataaattgttgT-----------TGACGAAGAGAAGAGTTAGAAGCAAGTTAAGCAGCATTAATCCCC-----------------CCCAACTTCCACATCTTATTGTACATTTCTATAGGTTTGGGAGGCAGAGTAGAAAcagaacttgcagca----------------atctttcaACAAAGTATGC-CATGGAAAGGAGCaaaatcagtt-attttaaaattttccttttagcaATAATCTCtccagttaaaattaaaaattcactacttgttatatataaatatct-----atgtGCTTCCAAGGTC-TTTGTGTGTTAATATAATGTTACGTTTGTACTT---TCTATAATATACacgaaaacatgaaataaaaaaggatggggtaaagataaaataaaatgtttttagaa---atgtTATTCTATGTATTCGTGCTTCAGGAAAGCATACAAATTTTGTTAACAATTTGTATTTACAATGTGGTTAA-ATATAA-ATCATCATGAAAATCTTGATGTGAAACTTTATGGCAGGATGATTTACAGATCTGGTTGTTAAGTTCTGTTTATTGAGACACTGTTTATCTGGTTTATGACTGTCATTATTGGAAAAGTCAAGTGGTAAAAATTCATGTCTCCAAGTGGTAAGAATTCATATTTCCTGCATTTGAAAAATCTTGAAACTTATGTTTCAATCTAGCTCACTAGTAATaagaaaattttcattgaatttggCC----AGGGTTTGAGTTTCTCTGATGTTATTCAGTTTCtctttcaagttacaaaatgctATAATTtcgtattt

a score=48054
s chr3           150358213 1676 + 160039680 TGATATGAAAGCTCGGACACATCTTGAAAGTT---TTCTTAAAGAACCAGTCATATTAGAATGGGGATGAC------TATTTCATCGCTAAAATGATTAGACTTTATTTAACCTTAAATATATTAATTGATAACCTCAAATAATCATTTTTA--AAACAT--TAG-----------------ACAAAGTTATATAAATCAGTTGTGACATATTCAGCACTGTAATTCTCATGA---ACACGTCCTACAG-ATGGACAGGAGAAGGGCATCTTTCAAAGGAATCTTTAGCTAATAAAAAAAAGCACAAACTTTCCCAATCTCCAATGTTATCA----ACAAAGAGGTGTATTTTCTAGCTATAAAGAA----GGAAGTTTCTTAGTAAGCTTATGATTACACAAACAATGGTATAAGGCTCCTTTTGGCTTCATTTACCTATTTAAAAATTCACATGATGGTTTCCACTTTACTGGTGGCCAAGAGATGCCATACCAAAAATTCATAAAAGAAAGATAAGGA--AAAAAATCTAAAACTTTCATTTCAGCTGTATGTTTCTCTCATCAGAAAAATTCACAAACTCCCCTGTTG----------GCCAGAGAGTTAATTTCTCTGCCCAAACAGGATGTACAGATTTGCTGACATTACAATATCCCATGTTTCAAGATCCTCGAGGATATTAATAAATTTCTATTTCTTAGGGGAATCTCA-----TATTTTTCCCCAGGAAAGATAACAGATCAGTATTTGTTATCTCAAAATATTAAGGTAattag-tgctgggtga------tttaaaaagcacaatgcagcatttacagca-tccagatacattctgaagcttagaggatgcttacttgaacttttatcaaaactaaggaa-ttttagtgtttgcaaaattgaagttgtaatctcaggggaaagggctatcttgcaagatttctggagcatcatgttgctttgttgaactgaaaatactatgtgcacggccattcggtgctttctcagcattctgTGAATTTCCTTAAAATGAGATGAAAAACCTTGGAAGTGC---GCTCAAAAAGTGCAAAAACCTAGATTTCAAATAT-TTATTAAATGACTTTTG------------------------------------------------------TAGAATAATTTTA----------TAA----TCATTGGTCTCTGTTTTGAAGAAATTATATTCTGAACTTTGTAACTTTTAGCTGTTCATCTGTGCAGATCCTCCACACCTCTGACCTCCAATTCACTGATGCATT-----AGATGGAACAAAGGTCTAGGGAGTACAAATTGACCAATCCCTGGGATTGCATCAGCTGAGTGGAGGTCCAGCACATGGTGAGCGACGGGCCTGATGTATGCGGTGCCTGCTTTAGCAGGCTGTTCAGTATCACATCACACTAC-TCGTTCCTACTTGTGCTGATTGCCTTTTTTTTTTGGTGCTGACAATATAAGTGATACAGATAATTTAAGGGAAGGCCAGC--------------------TGGTTTACACAAAGCTGTCGCAGGAGTGAAGAGCCAGCTCCTTTTGCATTCTGCTTCGACTGTCTTGAGTCCATCTCTGAACCGCAGCCAGCTCCT-GCTGGT-GAACACTACAATGTTGTCATGTCATCAGCTCAGTCAAGATGTTCCAGCATTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTTAAAACTTGCCAACTTGGCTGTTTTCCCATAAATTATATGAAACAA------TATTTTAAAAGAAAATTTAGTTTGTATTTTCCC
s HiC_scaffold_1 136956402 1755 + 233722169 TGAGTTGATAGTTTATACAGATGCTGATAGCTGCTCCCTTGAAGAGT-AATAACAGTAAAATGTGagagacattttttatttcataattaaggCAATGATAACTTATTTTACCTTACATATTTTGATTCATATATTCTAATAAAGATTTCTACTAAACATAATAGTGTACTGAATGCCAAGCACAAACTACTGTA-----TTAGTGagatgttcaacattttc-ttcccatgatTGACCAAGCATACAGGATTAACggtaaa------ttttttaaaggaatgctTAGCTattaaatgaaagcataaacttttccaatttttattattattgctagaTAAAGACTTGTCATTTCTA-----AAAGAATACTGGAAGGtagttaat----------tttctcttctaaatTTTCAGGTCTATTTCAGGCCTCATTTAGCTATTAAGAAATTTATGCTATTTCATTCACTTTCATAATGGCCG-GAGATGCTGCAATATAAATT---GAGGCAAGGATAAGAGTGAAATATCCTTAAATTTTCATTGCAGttatacttttctctcatcaAAGAACCCCAGAAATTCCCCTGCTGTATCAGTAATGCCAGATAGCTAATTTCTCTCCCCAAACGGGGGACACACAATTGCTGATACAACAATACCCAATATTTAAAGATCCTTAAGAATACTAATAAAAACCTATTTCTTGTGGgaacttcaaattttcttttttcccaggaATGATTACAGATCAGTATTTGTTATCTTAAAATATTAAGGTAATTAGCTGCtgggtgaattttttttaaaa-------cgtAGCATTCACACTGGTTCAGATAAATGCTGAAATCCAGAGAATGCTTACTTGAACCacaa-caaaactatgaaaattcTAGTGTTTGCAAAACTGAA-CCACAGGTCTGGGAAGAAGGACTATCTTGCAAGATTCTGAGAGCATCATGTCACTG-GTTGGACTGAAA-CACTGTATGCGGGGCTGTTCTCAGCTTTTTCAGCATTCTTGGGTCAGcttgaaaaaaagatgaaaagattcaGAAACGCTGAGAGCAAAGAG-GCAAAAGTA-AGCTTTCAAAAATCTTCATAGAtgatgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaatatTTTTGGCTCTTTACCTAAGATTCCACTGTTctttattataaacaaaatg-atagtGAGTTAAGTAATTTGTAGTGGCCCACCTGTCttgctcctcccctccctccgcCGTCCACTCCTTAGTCTGTTCGCATAGATGGAGC----TCCTTGGAAGTCTACAGGAATT-----CTATGCTTGCATCAGCTCAGGGGGGATCCAGAGCAAGGTGGGCAACAGGCCTGGAGACTGCAGTGGCAGCTTGAGCAGATTGTGCACTATCTCTTCACGTGGTATTGTATCCCCTTATGT-------CACATTTTTCTGGTGCCGGCAAGAAATCAGCTAAGGGCAGAGTAAGGGAAAGCTGGCGTAGCAAATGGTCTTCTTGCTGGTTTTAACAAAGCAGCCACGCTGGTGGAGAGCCGCCTCCTCTTACATTCTGTTCCTACTGTCTTGAGTCCATTTCTGAACCCCAGCCAGCTCCCAGCTGGTAGCATACTACAATGCTGTCATGTCATCAACCCAGTCAAGATGTTCCAGGGTTTATGtgcatgtgt---------------------------------ttttttaaaacttgccAACTTGGCTGTTTTCCCATAAGTTGCatgcaatagattttttttcttaaaagagaacTTAGCTTCTATTCACCC

a score=25432
s chr3           150364662 1280 + 160039680 TTAACAAAATTACCAAATTAAAAATGTGCAGTCATTGTATTAGTTTATCTAAACAAATTACTTAGGCAAATTTAATTCAAACAATATTTCTAAAACACTCAATCTATAT---TGTATAAAATACAATACATAAAATCTGTAGGAGAAAAATAATGAAGTAAATATTGATATGCACATTATTTGTCCCAAGAAACATACTTGCTAGCTAAAGCTAAATTTTCTGCTA-TCAATTTAGGATAGCAGGGTCTCTTTTATTTATAAAGTATCAGTTTCTAGTAGTCATGTTGAAT------ATTTGAAACAT--------TTTATTTAATAACTAAATATTTTGGTTAACCCATTAGCAT--CTTATA--------TTATCTCAGTTGTAGGGATAAATAGAAAAAAAAATAGTCTG-ATTAA---AAACAGTGAGGGATGTCTAGTGAGTTTTATTCCTTCTACATT----CACCAAATGTACTGTTTCCATCTTCAAACACTCAGAAATAAACTATAATTCTGGAAAAAAATGGTTCTGATTTGTAGAGAAAATGAAACCAAA-AGTGCCTTAACATTTC----TGACTTTGTTTTATGTTTTATTGAATTTGACCATTGATTGTTT-ATGTTTCATTTTCCCAT-TTGGAATGGAATAGAGTCAAAAGATGTCACTCAAGGATTATCTCCTAAATGTAGCC-AGGCTGATAAACATCACACTTGAGATCAAGTCATCTTCTTTTTTTCTCTTTTACCAAAAAAAAACCcaacaacaacaacaacaacaacaaAAATGTTTCAGAGATAATCCCTCAGT-CTTGGTAAGCCGGTTTAATTTAAAATCATAAGATGATATAGAGAATCTCATAAAAATGTTTTATGAAGGCTGATTTTCAAATGGTTCATTTTCTATAAAAATGTTTATGGATTTTTAATAGTCTCTGGAGAGTCAT------TTTTTGAGTCTATTACTTTTAGTGCTTTCTGGCATTATGGTGTCATTTTCATTCAATGTGAGTTTTTGAAGGAGAAATAATCTGAGCTGAAGTCTCTGAAAACTCAGACAGTTGTTCCAATTAAGGGTGATTGCCAGTCTATATTTTTCATGTGAGAGGACAAGTTGCTCGTCATGAATAACATGACCATGATG---GAGTCTCTGCCATATCCACATACTTCCTGTAACATGCATGATGCTCATACATCTTTCGTCTTTTTTCCTTTTCCATAGACTTCCTAATTTTTGTTTGGAAAAGTGATTTATGAACAAGAAAGTTAACATAATCCCCAGTACTAATCAATG--TAGGGGCAAAGTTTTGAGGCACAAAGT
s HiC_scaffold_1 136962941 1234 + 233722169 TTTACAAAATTTCTAtacacaaaagagaagaaaatgatcccattttatttaaataaa--acatag-------------aaattatGTTCGTAAAATATGCGATATATACgaacacataaaataaaagtcatataAATCCCCTTAGAAAAGTGGTGAAGCAGACATTCATACATGCACCATTTATGTGAAGAGATGTTACTGCTGCTTAAAGTTGGATATT--GTTAGCCAATTTAAAATAT---GACCAATTACATTCATTGGTAACCAATTCTCAGCGTTGAGTCAGAACTACATAACTAGAAAAATCATGTTTGTGTGTTTGACTACAAAACCAATGCTTCAGAGTATTAATTTTGCTTATAATTGCTATTTTTCTcatcaatat--atatataaacaggAAAATAGTTTGCAGTAAGTTAAACAACAAAGTCCATCTTAT----CTTACCTTTTCCAGAACGGCACACAAAAAAATCTGT-------------------GCAACAGATTTTAGTTCTC-AAAAGACTAGTTCACAttt-cataaaaaggaaaatcaaataaagGTTTAATATTTTGCATTGCATTTGCTTGATATTTTGTTGTATT-GATCAttgataattttatgttttattattttatattaaaatgaggGAAGAATTAACTTTATTAGTTTAGAATTATCACTTAAGTTTGATAGAATTTGCTAAACATCACATATAA-ATCAACGGatcttccatttctctattttgtca-------------------------------CAAAAATGTGTCAGAGACAATACCTGATTTCTTATGAAAGCAGCTTCATTTAAAGTCTTAAGAAGATATGAAGGATGTtatgaaaatgtttcataaaagctgatttttaaatgGTTCATTTTCTATAAAG-TGTTTATAGATAATCGATTATCTCTAGAGAGTCATCATTTTTCTCTGAGTCTGTTAGTTTTTATACTTTCAGGCATTATGGTGTCATTTTCATTCAATGTAAATTTTTGAGGGAGAAGTAATCATAGTTGAAGTCTCTGAAAAATCCTCCTGTTGTTACACTTAA-GTTGATTGCCTGTCTATATTGTTCataaga-agaaaattttccaCTTTGTGAGTAACTTGGCAATGATAAATGACACTCAACTTTGTATACAGACTT------------ACAAGGTTCATA-------CGATGCATTCCCTCCCCTAAAACACTATTAACCTTTGCTTTGCTaagcattttataaataataaggTACAAATATTTCCCATCCCTAATCAAAAACCGAGGATACAGTgttgaaaaataatgt

a score=6143
s chr3           150370772 208 + 160039680 TAAGAAAGAAGCAGTTAGGAGGTATCACAAGACAAACTTCACTAACTTGAACTTTGTCAGTTTGTAAAAGATTTGCCATTGTCAAGTATTGTCATCTTTGCCTTGAGATTTATGAGATGCCAGTTATTTCTTACCCCTTACTCACAAAGAAAATCAATCACAAGTAGCCATTTATTGGCTTTGGTCGTACACGTGAAACTAGAGAAAC
s HiC_scaffold_1 136970700 183 + 233722169 tgaaaacaaggcaGTTAG-------CACAAGATGAACTTCACTAGTTTGATATCTGTAAATTTGTAAGAAATTCAACTTTGTCAAATATTATATTCTTTGCTTTGGCAATCTTTTGAGACCAGTTTtgatt---------cttgaaaaaaaaatcaatcataaaT---------TGAGCTTTCGTTTTGGAGATGAAATTAGAAAAGC

a score=12109
s chr3           150371980 460 + 160039680 TTTTTATTCTATGATAACTT-----AATTTTTATTTTTCTTATTGTTATATGGA-TCATCTTTAATACCTAAAATT------ACCAACAGCTACCTAAAAC-TGTGACTCAAGCCTTCTAAGTATCAACCTCTATAAATTTTCCTATGTACTAAGAGCTAATACTTATTTTAAAAAACAGAATTTTGGCCCAGAAAACACTTTATTGACTTCAGGCATCAATTCTTCTAGCATTTCTTCTCAAGTGAATCATTCCTGGTGTAATAGATACTTAACATGGTAGTCCCCATGCCCAGAATTGC--------AGGTTTATTCAGCTGGCTCTTAC----TATGCATTTAATGTGAATCTACTTTTAACACTTATGATTTTATTGATTGCTTGACTAGAAAAGACATTGTCAAAGTATGGTGGATAGGTTAAATCCAGCTCACCACattattattaattattattaatttattGCTGAGAAAAGAAACA
s HiC_scaffold_1 136974726 449 + 233722169 tttttatttcatagtAGCTTGATTAAATTCTTCcttctcatattattttatggaatcttttttaattttccaaagtCTCCTGACCAATAGTCATCTAAAACCTGGGGGT--AGATTTATAAATCacactttataaaaattttc-taCCTATGAAGAGataatgtttatattaaaaaGCAGAATTGCAGCTATGAAAGAATCTTTTTGGCTATATACATCACATTTGCTATCATGTCCTCTCAGGTGAATTATTTACAATATTGTAGATATTTGACATGGTGGTTCTT-TGCCCAAAATTTTCTTTCCTGGGATTTGTTCAGCTAAATATTATACAATATGCTTTTAGTATAAATCTGCTTTT-------------------ACTCTTTGACTAG-------GTTGATAAACTCTGATCCATGGGTTAAAACCAACTTACCac-ttact-tttataaatatagaTTTATTG----GAAAACAGACA

a score=36880
s chr3           150378443 918 + 160039680 TGAAAAGTTGTATTTATGAGTAGTGTAAGGAGCTTCAATCA-TACTGCATAAATTTTACATGCTGAATTTGGAATAAGCATTTTATTATGCTGTAGAAAGAATATGGACAATAAATATTTCATGACAACTCATAAACTCTGTTATTATTTGTATTTTCATAATACAATAGACTTGTATCACAAGAGCATTTTTACAAAGATAGGTTTTTCCTTTTGTTTAAAACACAAACATCTATTTTTCTCAGTAAATCAATTTTGTACCATAACCATGCATACCTGATGTGTGCCCTAAATAGCCTGTCATAAAATCAGCATTTAAACTCTTACTTAGTGCA-GAAAATTTGATTTACTAGAATATTTACCTTGATTGCCATAGGAAAATGTTTACAGGGGTTTTGGTAGTGTTAAAATTGCATCTGATTTCTTTGTACTCAAGTGTAAGAAGAATTCAAGGAATAAAGATGAGTAGTTGACTAATA--TGGAGGCTCTACTTTATAGTTATAG----GACACACTGATAACTATACAATGTCATCCATTACCTCTATTCACGTGTAAATGTTAACGGTTTGTTTTTCTTATGTTACCTAGGATAAATTGTAACATTC-TAGAAAAGTTTAGTTGACTTCCTTGTTCATGAGCCCTAATGCTTAACCAATCCCAGCCTCACAGGTAAGAGAAGTCTGTTACTAGAACACCATAGATGAGGATTAAGGTGAACAAAATCATTTTTAAATGCTGCAATCCTTTTTCTTTGTGG-TAATTCTTCATTTTGTGCTTAGTGATTTATCCAACTTATCTGAACTTTGGGTTTAAAGTTCTATGTACATTTAAAAAAATTTTTGAAAATAGATGATTGAGAGCTTCATCCAGGATATTAGTATTTTATATTTTGCCTTTGCGTATGTTTGTTTTTCTTTTCT
s HiC_scaffold_1 136978823 859 + 233722169 taaaaagttaaatgtagGAGTTATTTAAGTATCCTGAATCAATGCTATGTGGTTTTTACATATTGAATTGGgagtaaacattttattatgatGTATAAGGaatatgttcaataaatatttcatgacaACTCATAaactgtattattgct---attttcatAATACAATAGACTTGTATTGCAAGCACATTTATACAaagatatgtttttcttttagtttaaaatGCAG-----TTTTTCTTCTAATAAATCAATTTTATACCATAGTCATGCATCCCTGATGTGTGTCTTTAAAGGCCCTTCATAAAATCAGCATTTGAACTCTTACTTAATACAGGGAAATGTGATTTACTAGAATGTGCACCTTGATTGCCACAGGAAAATGTTTACAGAGGTTTT-GCAGTATTAAAATTGCATCCAATTTCTCTGTGCTTAACCGTAAGAACAATGCAGGGAATAAAGATGAATGGCTGACTAATATCTgtag-----attttatatttataaacatgacACACTGATAAAGTTGGGAAGTCATTAATCTCTTCTACTCATGTA-------TAACTTTCTGTGTTTCTGATggtatataaaataaatcattataaTAGTAGAGAAAGTTTGTTGATGGCATT----------CCTAATGCTTAACCA----------------------AAGTCTGGTATTGAAACACCATAGATCAATGTTAAA--TATGAGAACTACACAGAAACACTGCAGTGTATTTTCTCTAtgattgtttcttcattttgtgttttctgtcttaCTAAA------TGAAC-CTGGGATCAAAGTTCCAAATGATTTCAAAAGGATTTTTGAAGATAGGAGATTGAGAAGTCAGGCCAAAATATACA-----TGTAGATAGTctt--agtaggtttttttttttttttt

a score=44126
s chr3           150394569 3174 + 160039680 AATATAAGTGCTGGTTTAAATGATCACTTTAAAT----GTATTTAATTGGAATAATAATACTGGAAAAGCAGAAGTAAAAACTAATATAGAATATGCATTTGAA--AGCTTGCTTTGGAAAAGGTCAAGTGTTATTTATTTTAAAGGTAAAATTTTTGGTTCTGAAAAAAATAAGCTTCCTGATTTACAGTTTCTGCACTCAGTCTGCATTCTTC-CAGCTCATGAGCTAATTCAATAATTCT----------AATGGTTACTTCTAAAGCCTAGCTAGAAATTTTAATATCTAATGACTTTTGCCTGTGTGAAAAACTTCCTTAACTTTAGGCATGCTTTAATTTTTGCCCATACATGTTTAAACATATTCTATAGACATTTTTTCTTTCTTCACTCAGCAGCTATTTATACAGAATATAAAGCTTAGATATTTTTATCAGGCTTGCATATATAATATTTAAATACATATTTCAAAAATGTTTATATTCTAACTGGAATTAGGTAATGA-------------------------AATGTAAGGAGTTA-AAAATTCTCTCTCAGGTTTTATTTCAAGGCAATAATAATGGCATATTTAATTTGTCTTTGACCAAAACCAAGGACAAAAGACAGA--AATTTATGTCACCAACACACTTAGATTAAAGAAGAAATAGCAATATCCCTACTAAGTATGTTAAATTTTCTGTTTTAATGGTTGGAAAAGGGCACATTTCTTTTCAAACATCTGATTTGTC-ATTGAACTCAAATTCGGTAACTTTTCtttaaatagatattaaaaatatatagttaaaat---------atattatagtg--ttttaaaatttattCAGTGCCATATTGCCCTGAACATAATTTCACTGTGTCAATAATTTTGAATGCAATTAAGACAATTTATTTTTTTAGTTTTAGAAATA-TGTTTTATTGATAATGAGTAGTTTAAAA-TCAATTTTAACCTAATAAATTTCTTAATGTGCCCATAAATAAGTTCAATTGTTTTCATTACATAATCTATCT--------GATCAAAGATACttataattatt-ttaatat--agattatttgttttaacctttataatttttaa-atactgtttttttattttaCTGACATAATC------TTATTTTCCAAACATCAAATGATAATTCATAGATCCCTGGGTCAAGAAAAATACATCTCATGTTTATT----TTTATTCACGCATA----TTGAAATGCTCTTTCTTCTAGCAATCATTATGGAATAATATTTCAAA-ATGCATTT----AAGTTGGGCAGCAATGATTTATGGGTTTTTGAGTGAGCCACTTTTTAACTTCATTTAGCAATAAAACTAAGTTAAATCAGACAGCAGAAAAGACTGCTGAAGTACAAAAAATTACCATGAAACAGCTTTATTCACAAATTTCATGAGAACGATTGCAAAGTTTATTATTTTACAGACATATTTATTAGTTCTGCATTTCACTGAAGATTAGCATTACTAAGAATTCACAGAGTTCTGCTACACCTTGCCACCTCATCTTGTCTCTTTTGGTGTTTTCTTGAAGGTACATTTGTCTTCGCCATCTGTGTCTTTTACTTACCTGTACCATGTCTATTTGTGACGTGGGTTATCAATGAAATGTCACTTCTTCCAATA---TTTACAACCCGACATATGTGAGGTTTGTCTGACAGGGAAAATGATGCACCGCTGAAATGAACAGCAAGCATCTGTATTAGA-----CAGAGAGAAAGCTCCAATGCGGGAAGAGGATCCAAGACTTCTGCAATGCAGC------ATGGGTGGGCAGAGAGGGGTTCCTTCAATTTGTTAGATTCAATATCTGGAAAAAATGTAGCAGAAAGAACCTACTCTGTGATATAAACTGCGTGAGAAGTAAAACACA-----TGTGTGATCTTGTCCTACTTTTAATCG-TATTTTCTTTTTAAGAATAACAAAGTTTATTTTTTATGATTAAGAACATT---TGCATGCAAATGACTACAGCAAAGA-GATGTGTGACCATTACTGTGATAGCCTGTGGGGCACCACTTTCCTCACAGGATGAGTGTAAGTAGG-----------CCACGTAGTGACATGGG------------CAATGA---ATGCTACTTGCTTATTTTTTT----CTTTGAGTGTATTTACAGAG-----ACCAGGATGACG-----ACTCAGAACAGAATCAGAAGTTCACGCTTA-GAGTGTTTAAGTGCAATG--ACCGAACTGAGCACATTTCTCATGCTTCTCAAGACATTCCA-------AATTCTG--GTCTCATGTGCTCATTCATTCTTTCTTATCAGGCAACCAATGC-TGTGCACTGATTCTGCAGCATCCTCACTAACAAATGGTTTGACCCTTTCACAGAGGCATAATTCCAGAAAGATCCACTCAAGTTACATACACATTGCTTTTAAATACAAtgtgcgtgtgtgcatgtgtgtgtatgtgtgtgtgtgtgtgagtgtgtgtgtgtg--tgtTTAGTCATTCCAGAGGATTAACACATGAA-GCTGGGTCACAA-AGACACAAATGTGTAAAT-----TATTCCAATTTTTTACAGTG--------------------TTATTAATTGTATGCAAGAGGTAAG-------TGCCATGGTGTGAATGAAAATCCAGATGCAATCACAACAGATCTATGAGGCTAGCAAACAGGAATATTATGTTACTATGTGGCCATTTCATGATCACAGGTTTGTTTTTGTAA-----------TTACCTT-CATGTAGCTTATCTTCAGT--TGACAGCTATTAAGTGTTATTTTATT-TAATATTTAGTAAAG----ATGCATACAACACTTTTAA--------------TTTAAGAAACTGTAATTTGTGTAAGATTCAGTTGTACATGATTTTAACAGATTTTCATTTTTACTAT-TTTCTGTCATGTGAGCTCTTATTGATTTACAACAAAATGTCATTAGACATGAAATAAAAGCAGCTGAAATTAATTTACATCTGTCATTTTGGGGAAA-AGTACTTTTATTTTAATGGCTTGGAAATTTGGCAGAATGATGTTTTCTAAGGTCACTGTGTGACATTATTTATCATATTACTTTAAAAAAAGCTAAAACTGAAATGTCATTTTATGATTGGGAAAA-AATTAGCATTGATAACAAGCATATTTTTCTTTATTTATTATGGAATTAGAAGAATGT-GCTTTGTATAGTCAGCA------AGTACACA--------GTGTTTGTCTATGTCACCCAACAGATCTATTTTAATTTTCATTTCTTGCCAAATGTG-TCTGAACATTACAACTAATTATCTAGTTAGGAAGTTTCTTGTCGATGGGCTTAAAAGAAAAAGA
s HiC_scaffold_1 136990425 3209 + 233722169 AGTACAGGcaattgtttatttatatattttaaaacaaattattttattcatccaGGAATACTGGAAATTCAAGGACAAAAG-TAATGTA-AATATGAATTTGGATAGGTGTATATTAGGAAAAGTCAACTGCA------TTAAAATGCAGAATTCTGGGTTCTGAGGAAAA--GGCTTATCACTTTACATATTCTGTACTTA-CCTGTTTTCTTCTCAGTAAAT------ATTGAATAATCTTTAAGATGAACAATGATGACTTCCA-----TACCTAGAAATTTTAAGCtgtaaaaatctttatttctgtgaaaacCTTCCATATTTTTATGCATGTTACTCTATTTTCCC-TATAAGTCCATACATTATTTATG---ATTTATTCCACTAATAGTTATCGACTTCTT----------------TCAGATGCTtttct-atgtatgtatatagaacatataaatacaGCCCTCTAAAAT-TTTACATTCTAGCTGAAAGGAGGAAATCAGGTTTATAAAATCAGACAATTCTTTAATGTAAAGAACTGCAAAAGTCTCCTTCAGCTTTTATTCCAA----ATAATACTACCCAGGTTCATCTTTATCTGactgagaataaa-ataaaaatcagagcaattTGGGTCAAGAACCCTCTCAGTctaaggaggaaaaatttatttccctaTTTA-CCTAATAAAAGTTCTATGCTAATGTTTG-AGATGAGCTTGTAATTTTTCAAATggctgatttctccacagagcaCAAATtgagtctcttttctttgaatgaa-----AAAAGTGATAGTTTAACTTACAAATTCATATTGTGTTGCTTTTTAAGTTGTAGTTAGTCCCATATTTCCCTGTATATA-TTTTGCTGTGT---TAATTTTGAGTGCAGATTAAAAAGTCTTCTTTTTTAACCTTAAAGAGAATCTTTCACTGATGACTTACAACCTAAAAATCAGTTCAAATCTAATAATCTTCTAAATATAACCATTAGAAGGTTCAATCACATTTATGATTAAATCAGTTTATGTTCTGGTCCTAAGGCATTTACTATGATTGTTAACACTCAGATT-TTTATCTTAAGCTT----ATTATTAGCATACAGATTTTATAGTGAAATATCTTGATCAGATACTCATCTACAAAATATGAGATACTAATCTACAAATTTCTAGGTCAAGCAAAATATATGCCATGcttactgtctttttttcaaACATACAATTTGAGATACAATTTA----AGTAATTGTCATGATAAGACAGTTTAAGTATGTTTTTGTTCATACTTGGGAGCAACCATTTATGAACTTTTGAGTAAACTATACCTTAAATTCACTTTCTAATACAACTGGGTTAAATCATATAGCCAAAAGGAGCGCTAAATC----AACATTACCATGTAGCAGTTAGATTAACAGGTCCCATGAGTGagtttt---agctttttgttttatgaatgtgTTTATTAAATCTCTGCATTATAGAAGATTAGCATCACTAAGAATTCCCAGCTTCCAACTACACCGGG-TAGTTgggtttctctttttaaatagttACTCCAAATCATGCTTGGCTTCAACATTGGTATTTGTTCCCTATTTGAAGCAGACAGATTTATAACAAAAATTGTCACCAGGAACTGACTTCCTTTGGCACAGCTTCCTGTC--ACATGAGCACAGTTTGTTTTCTGTGACAGTTAATACAccacagaaa-------aagaaacccttgTTAGAGAACCCAGACAAAGAAATCCAA-----GAGGAG--TCTCAGAAGTCAGT-ATGCATCTCTTATTTGACAGAAAACAGAGTAGCTCCTTC---TTGTCAGAGTTAACATCCAGAAAAAACTAA--AGAGAGACATTTCCCTATGAAGATGGTtataatggaaacaaaacttaaaCTTTGTGTATCCTTCTTAGAGTGTTGTTTACTATTTTTTGCTTAATGCTAAAAGAAATCTAtttaaattctcaaaaataatGGCTGCCTCACAAGGACTGAGGGAAAGGCAACCTACTTTCAATTCAATGACAGCCT-TGGAAGGCTAGAGACAACa-agagcaggaggaagaaggaaggaacttTTACAGTCAGGGATATTTGGCGTCTGTACCTCAAAGGACCACGTTTCTTGCCCTTTTCTTGTAAACTTTGA---TATTTACAAAGGAGGCAATAGGATTACATCCTTACCCAGAACATATGCAGAAgtg-acatttattatttttcatattttatgatACTGAATTCGACACATTTTTCACACTTTCCAAAACCTTTCATTGTTCTGACTCTGTCATTTAGCGTCTTCAGTCATTTTTTC--------CATCTGCTGCTTGTCCAGT---------GCATACTCACTGACGGGGGG-----------------AGTATATTAGC----CGATGCACCCCAGTGACATGAAAATTTCCATAAAA------GT-------------TTTGCAAATGTTATTATCTGCCTCATTCTTTGTGTATGGTTGTCAAATAAT-------GAGCAGCACCAAAGTGTTGAGTCACAATCCATCCAACTATGTTGTTATATATGTCATAGTTTTTCATAGGATGCACGGTACATATATTCATTCACTAATTAGACATGTGAAATAAACTACTGCTGCCA-------AGTAACAGTCCATGTGTTTACACTGAAGCCCTATCAGGATAGAAActcagtaaaaaatgtt----------tttttcatgaTTACAGTATTATGAATACAACTTTAAGTCAGTTATTTTGCTGGTAACTTACCTTTAATACTATAAACTTTAAAGTCACATTTTATTGTAATAGCTAATAAAACATTAGGTATATTAAGTCTTTAACTATTACATTGTGCTTCAATAACCTAAGATTTTTTCCTTGTCAGGTTCTAGA-AATCCT-----ACTTTCTTTCTTAGAATATATCTTTCTTATGTGTTCTTattcattaaatataaaatgctaTTACATATAAagc-aaagagattaaaattaatttacagaTGTCTTTTGGCAGAAagaattctttcatttcagttgctTGGGAATTTGATAGAATAAATTTTCATAAGGCCACTCTGTGATGTTGTCT----TTTTGCTAT-ACAAAGTCTAGAACTGATATATCAATTTATGGTCACCAAAATAAGTACCATTCATAACAAGTGTACTT-------TTTCTTATGAAGTTAGAAGAAAATCACTGTGTGAAGTCAGCACCACCCAGTATATATGCCTATTGTGATTATCTATGCTATT--ATGTGTGTATTTAAA-------------CCAAATTTATTCTACAAACTACAATTACTTAGTTAACAGGAAATTTACCTGTCAGTAGAAGTAAAGAAGGGAAA

a score=59016
s chr3           150406985 2333 + 160039680 TATCCTAAAACCTCTTTCCAAACTTTCTAATGC---------AGCAATTG----GGTTTCATGTGGCAGAATATGTTTGGCATGAATTCA------------AAACTATAGTTTCCCAT-TGGCAGCAGAGGG--------CTCAT-----------TGTTAATACACAGAATAAAAGAAACTCAGGATCATGTAGACAGAAAGGAAGCAATTAATTGTT-ATTTCTTCTATCTCAACACTTAGT-AAAACTTAGATGCCAAACTCTACTAGAAATATTTTCACAAAGATAAACATTACTCTCAATAAACATGCATGTTTTAATATTTTAGTTGATGTCCCAAGATTG----TTGTCAGAGA-----ATTGTGCTAGGGAACTGGTGTGTCCTACTAGCTTAATTATGGAGCAGATTCTGTGGCTGTAAACATGAAACATAAACTGTATAAACTGAACTTCTTTGTAGATTTTTCTAGGAATAAAAATAAGCGTTCATAAGGCTAAGCTTATTTAGATTCTTCTCTA-ATTTCAGTCATCATTCCCTAAAATCTAAGACTGTACTGTAAAATGAAATGTGGAACATTTCTCAAAAACCCATGAATATTAATATCCCAACTTCACACTGACCTGTTTCATTGGTTAGAGTTTTGTGCACTAATCAAAGGCAATTACTCTAGTTGGCTACGATATAGGGGATGCATTAATAGAAAGTAGAACAACTTGTAAAGTCAAAGAAGGTGCCGCAAAAATGATGCTTTTTGCAGGAAGGAACTTGAGTAGCTTGTCAAACTGAGGAAAAAAAGGTGTTTTAAGAGTATGGTTTTGGTAATTTAAAATGGAATATTTTATGTGTGTCTTACTGTAAATCCCTTGATGCCTACC--TTTAAAACACAATTGTATATGGTTAATGAATAGTCACATTGATTGTATAATTTTGGGGTATGTCTGAATTATTTGAAAATATGTTCACAGTCTCAAATTAAATTGCACCTTTCAATT--------------------------------------TATTTTTATTTTTGTTA---TGGTTCTCCTCTACATGATGTTGAGTGGCAGT-TCAAA--AAATAGGTAGGTGATTGGACTATGACATTTTTTCACTCTATGAAGAGC-CAAATGATTCAAGG--AAAGGAATTGGCCTTTTTTCCTCCCTGAGTATCCAGCATGAGTGCTTCCAACTATGCACTCCATTAAAGAGTTAGTTTCTCAGA-AGACAAGAGTGTGTTTCAGCTCAGAATACATGAAATCTAACCTTT-CAATT--TTTTCCTGTAATTCATGATGAATGCATTTGCACCCTGAAAGAAACCTTTAAGTGAGCATAAACCGTT-TTATATAGTTATCGTTAGAAAAGACTG--GAAGTCAGAGGGGTTAAGAATCATACTCTTAAAGAAAC-TAATTAGCTATGGCATTTATTTTAAAAAGAGCTAAATCAGCATGCCCAATCTTATGCACAAAGCCATTCATCAGAGGACAGATGGTCCCCTAAAAGTGAAACTAAACAGTTCTTGAAACATGACAATCCATTTATCTTAATGTGAACATCCTCTAGCAGATATCAAAAAACAATCCAGGCAGATTTATAACTTTTCGAGTATAATCTGAAAGCTATTGGCATCCAAAAAAGGAATATTTGTATTTATTAATATGATTCATACTCGTAAATGGCACAGGAAAATGTATAGTAAGTAAAGTAGTTCAAATATCTTGATTTTGTTCAAAACTACATTAATAGAAAGATGACATTTGTCATCAACACTTCTTTATGGTTTTCACTCTGTTACATGACAAAGCTATCCATAATTCTCTTCCAAACATCTCTATCTGCCTGGGTGTTTGCAATCTGGATATGTTTTACTGGGCTGCATGCTTTCATTTTAAGTTGAATAAAAATTGTGTACATATTCTATTTTGTATTTTTAATTCATTCA-----TTtttatttactcaggaagcatttattggatggctgctctgaaatctgccaggaaatggaaataaagacataaatcaatggtctccg-ctctacccttaagcatctctcattctaagaggaagagacaTGGTTCTGTGTAATTATTATACCGTGAAGTAAAAGTAGGAAAA-TGTAGTGAGTGAATAACCTGTTAGAAATATTGATTTATTTTTCCCAGTCTTTAATTCTAAATTCTTCCTTAGTCCTCTGTTTTCCAATCTTTGCCAACCCTTCCCTTATCCTATTAACTAGCTTCTTTGGGGATTCTGGGATTCAAAGATA-ATGTATTATAAAGAAAA----GGGAAAAAGGACCACTACTTTTG-CAAAGGATGGAAAATAAATACAACAAGGA--AGGGTAGAACCTAGCCAGAAAAGGACTGTCTACATCAAAGAGTAGAAGAAGGCAGTAGATAGAGACAAATGTTAGAACACA
s HiC_scaffold_1 137008828 2197 + 233722169 TAATCTAAATGCTTCCATTAAATTCTCTAATACTTTATGTGGAGTAATTTTTTTGGCTTGGTATAGTAAATTCTAATTGGCA-GTATTTATCATAGTTTTAGAGATTATGGTTTTTCACACTGTTGTAGAGGGGAATGGTTTTCATGTATATCACTGTGTTGACACACACGGTGAAAGAAA----GGGTCAGGtagaaatatatgaagcaatTAACTGCTGATTTCTTCTAGCTCTCCATTTAATTAAGAATTAGTTTGTAGCTTCTCTTTTGTATCTTCTGACAAGGATAAATACTTTATCcgagaaatat--attttctgtaattatcaatgatgtttcaaaagagaaaagtatCAGGGAGGTGGATTTTTCTAGAACACTGGTTT-TACCACTATATTACTTATGGAACTGATTCTATAG------------AGCA-----------------------------ATTTCTCTGGAATTAAGAATGGGCATTTATAAAACCAGCTTCACtgatctgtctctctctgtctcactttcAATCCCCATAAACTTGGAACTCAACTGTAAAACAGATTTTGGAAAACT-------------------------------------ACAGATCTATGT----------------------------------------------------------------------------AGTAAATGAACTTAT-------------------------------------------------------------------------------GCGCTTAATGAATACAAATTTAGCAATATATGA-GTAATATTTTGCACATAGTGTACTGAAAATGCCTTCACCATTTCTAATACAAATCACTACTGAAAATGCTTAATGAATTGT-GCTGTGATTGTGTAACTATGACTACAATTTGAATGATTTGAATACATGTTCAAAACCTCAAATGAAGTAGCACTCACCAATTCAACAAATAATATGGATCAATACATGCTAATTGTGTATTACCTTTATTATTGGTAGCATTTTTCTCCTCTGGTTAATGCAGAGTAGCAATATCCAAGCAAATGTGACAGTGAAAATACTGTGATAGCCCTGTACTTCATGATGAATGCAGTTGATTCATGACAGAGAGAGCCGACCATCCTTTCTTTCTCAATGGTCAGCGCATGCACTTGGAGCTCGGTGCTCACTCAGAGCATTAGTTTCTCAGAGACAGAAGGATATTATTAAGTAACAAGCCTATGAGGTACAACctacataattatttttcctacAAGGTCTGAATATTGTATTtgcaaga-aagagaaatctttATGTGAGCATGAACTGGTATTACGTAGGCATC-TTCTCAACAACTACAGAAGTCAGAAGGGTTAAGAACtgcattcttaaaaaaaaataattaactatggcatttatttaaaaaagagctaAATCAACATGCCCACTCTTATACATAGAACCATTCATCAGAGAACAGATGGTCCCCTAAAAGTGAAACTAAACAGTTCTCGAAACATGACAATCCATTTATCTTAATGTGCACATCCTCTAGCAGATATCAAAAAACAACCAAGGCAGATTTATAACTTTTGGAGAGTATTACACATGCACTTGAAATCCAAGAAA-GAATGTTTGCATTTAATAATCTGATTCATATTTGTAAATGGCACATGAAAATGTACAGTAAAATCTGT-gcttaaatattttgattatattctAAACTACATtagtagaaagataacatttatCATCCATATTTCTTTAAGCTTACTATTCTG-----TGACAAAATTATCTGAAATTCCCTTTTAAATATCTCTGTCTATCTAGATGTTTCAAATCTGGGTATGTTTTGTTGAGCTGCATATTCTTACATTAAATTGAAtaataaatgtgtacattttctattttatctttttaattcatgcattcatttttcatttattcagcaaGCAGTTATTGGCCAAATATTCTGAATGCTGCcaggaaatggaaataaagagataaatCATTGATCTTTATTTCTGCCCTGAAGGATCTCACAATATAGGAGAAATAGGCATGTACtcatatcattattttaaattcaaataagaGTTTAAAAAGCGTAGTGGTTGAACAATTTCTTAGAAATGTT-ACTCAGTTTTCT--GGCTTTTGCTTTCACTTCCTCCTAGGTActtcctttttcatccctt--cACTCTTCCTCTTATTCTGTGAGCCAATATCTTCATGAATTTAGACAGTTAAAGATACATGTTCTgtagagaaaattttttaaaaaaagactaaaggaTTTGTTGAAGAGTAGCAtataaacacaataaaaaataaagcagtaccTTGATTGTAAAGGCTTTTCTAAATT------TAGAGGAAGAGAACgaaaaagg--aaatataagaatACA

a score=56196
s chr3           150424267 2982 + 160039680 TTCTAGATTTTTA-------------AAGTATTAAATGATAGTTGCTAATGAATTTCTAAATAAATATGTGTCTTAGCCATCTGAGAAACTCTGACTCTTCCTGTCATTCTCTTCAGGGAGAAAAAATTCACAAAGATCAATTGCGTCTGATAAATACACTGCTTAAGTTCTTCGTGGTGACCAAGTTCCATCCTACAGCATAGCAGCATGCTTT---------AAATAAGTAGAAATTAAGTGTAGTATATTCTAAGAAAAAAAAATACCACAATGGTGATTGTGTTCATGTGT-TGTTGTGCAGTCAGTGTTGTCAAAGTAG-TGTTGGGTGTTTGCTCATT-TAAGGGAAATATATGTAAGAAGGTTTGGTGAATATGTATATGCTTTTTGCTTGTTCAGGCTCAGAAACTGCATTTTAATAATGGATTACTAAGTGAAAATTCATGTATTGTGTGTACTTCAGTTTGGAACTTATACGTACTTGAATGTGTTCAGACAGTTCAATTTGAAGTATCGCTTGGCTTAAAAATCAGAATATTTC--ACAGATGCATTCTGCCTGACTTTTAATCGATGTGTACTGAAACCAGTGGCCTCCAAGCACAAGAGTTATCATTTAATAT-GAAAATGTTACCGACATGGCAGCAATAATCCTATTGCCACAACAAAGATCTCAACCTATAGAATTCTTAGGGGAAAGTATACTGAGTGTTATGGATGATAATGTTTATTATGTAAACTAGATATAGGCTTTAAATTAGTTTCTAAATAACTTAATTTCCTGGCTTATCGGTTA-CAACACTTCTAGGA-GTTTTGT----------------------GAAGGATGTTCATTATGCTT----------GTTTATG-TTTTAATAAAC-------------------------------------------AAGAATTTCTT--GTGTTGAAATTAGTGAA-----ACATA---------------------------ATTCAATAAATATCAGACCTATGGAATGGCCTAATAAACAACTGTATATTATTGAAGTCAGAAGTACATATTCCATGTTTG-GGAAGAACCCGTGTAAACAAATAAGTGATAAATTAACA-----AGTTTAAGTATATTTCTTAGTCGCTATGCACTAAAGAAATAGCATAATTATGCTTACATTGATGCTATACTTCAACTTTTTTTTCAAGTCACAAAAGAAGCTAATTTTTAAGGTTATGGATGTCTAATAAGCATTTGGGGTATGTTTAGACTTCTATTACATATGAATTGTTATTTTAT----TTGGCTATATGTAATATGACAAAAAG-------TACTCAAATGTCATAAAATAAATCTTGCTAGCGTATGAAGGTTTTATTTCTCCATCTACTGCAATGAAAAAG--ACAAAATGTGGAAGTATTTAGTGATTAAAAAATTTAATTTCAGCTACTGAAGATATCTTAACTAGCAAGATTCCATTGATCTACTGTAAAGCTTTGTCAACTAACGCTTTTTTCCTTCAAATTGATTCCCCATTTTCTCTTCTCATTTTCTCAACAATGCACAGCAGGAATCAGTGTCTACAGATAGAAAACAGGATCTAGCTGTAGGCATATGTATAAAACAAAGAAGCCCTGATTAAAGGGGGGAAAAAAGGCTGCTGTTCCTATTTGAACTTAAAATTATTGATCTTGTCAATCAGTTACAAACACAGAGCTCCATTTAATTCTATAACGAGCATTAATGGTACAGGAGCATGGCTGACCATTTTAAAAGTCAAAGGAAT-------ATAAGATAATATATTGTTAAT-TTTTTTATACAGCCTAATGACTGTTAGGGTGTGTTCTATTTCACTGATGTTAAGTCAGTCTAGAGTCCTTTATAATTGGCAACTTTGTGGGTCAGTGTAGAGGTCAGA-CCATGTGTGATAAGAGGGGGCAAC-TTCAGCATGGA---TCTCTCAAGTCTA-CTCTTCCCTTTAGGTAAAAAGAAGAGCATTTAAGTTAAATAAAAAAGATAATAACAATGAGTGATACTAAGTGACTGAGCTGTA-AGACAATTT--TTTGT-AGACTGCTCAAAATAGACAAGTCAAAGAAA------------------TGAAAAATGTGA--------------------AGGTA---------------TCATGGTCATTATTAC----------TTGCCCTGCTG----------GACAAGCACATAAGCT-TTTGGGTGCACATAACACCATGAACCCGTCTTCCACCTTCACTTACATC----CATGATCTGGAGCTCATCA--AAGATCCAGACTCTGCC--------------------------CGTGCTTTCCTTCAGTCCCTGGAAGCATTTTGTTATTCCTTTTCTAGCAGGCTATGTAACAT-TTGGAATGTGCTTTTATTTTAAACACAGAGGGATATGGTCTGATTGA--AGATGTTGTGCATGAT----TCCTGCAGGCAGTGCAGACATGAAGTCCTGAGTGAGTCCCATCCTATTCTTTCCA-TAAAGTCCGAATGAGAAGTCCTGAGGCTGCTGAAGCTCAGGAAGTGAGTGTTCACCGCCAGCAACACTACATCAGA------------CACTTGTGATA-TTCCACCCATGGCACAATAGTCCGTGAGCTTCAGTG---------ATATTCTTCC--------------CATAGCACAAAAGTCCATGCTCCAGCC------GTTCCTCCTGCACTGCTCACCTCT----------CAATGATGCCATTCATAAA---TCTCCTTAATTTTAGTTGATGTAAAATAGAGATAATGTGTGCCAATGAGGA-ACATTTAGAAAGCAGAAATAGTCCATCAGAACATAGCC-----AAGtttat---attttattttatttaaGGGAAGTA-TGATATTATAAA-AATTACCAGTACTGTCAGCAGAGTTTGTATTCAA---------TATAACTTTAAATCTCAAATTCAAGGATGCATT-CTTGAAAACACCCCCTTTAATATGTTTGGTTTT--TTTTCCCCAGAGTGTCTATCCAAAACTAATTTATGTTGATGTCT-------------AGCTTTGTGAATAAAAATAAAATGCAAAACCAGTTCATTGTAGAGGCCACTTATAATTATATACCAGTAAGTGGAAATAGTATAATGTGT---TAAACATTAAGttaaattaaatgaacattttaaaaattaaaataatCTGAGTTGAAGATACAATAATCTGAAAAGGCTAAAAACCTTGGTTTCATAGCACTAGGTAGAAGAAAATTTC-----ATAAATAATTTATGGAGAAAA
s HiC_scaffold_1 137024995 3257 + 233722169 TTCTAGATTGTTCTGAACATCCCACTAAGTAATCAATAATCTTTGCTAATAAATTGTTAAATAAATATGTTCTTTACTCATCAGAAAAAGCCTGACTGTTCTTGGCACTTTCCCCAGTGGGAACATAATGACAAA-AGCAATTCCATGTGATAGCTACATTTGCTAAAATTATCCTTATCAGCAA-TAACAGTTTACTATCTAGTAGAatgtttttttctggaaaaataatgaaaga---------gtttctgtcagggaaaaaaaatac---aataattatCTCCCTCAAGTATGTGTTGT-CAATTACAGGAGTCTAAACAGACACATGGTATACAATCTTTATTAAATGAGTATAGATAGGTCTATCTGGTAAATGTCTA-GTAGCCTGTATTTATTCAACCTCAGGAGCTACACTTTAATAATGAATTACTATGTGAAAATTCTTGTATGCTCTGTAAATCAATTTGGACCTAATGCATACTTGACTGTTTTCACAATATTCAATTTTAAATGGCTCTGGGTTTAGCAATCAGAATGTTTTGAGAAGTTGCATACTGCTGGAGTTTTAATAGCTGCACATCAGAATCACTAGCCTGTATGCACAATAGTT---ATTTAATCTGGAAAATGATGTTGATGTAGTCAAAATAACCCTATTTTTAAAGCAAGAATCTCATTCTGTAGTATTTTTAGGTCAAAGTTTAGTGAATGATATGGACcatatcatttattttgcaaaCAAACTACACACATTAAATTACTTTCTGAATAATTTACttttacatttcatatttaaGCCACATTGCTGGAATGCTTTGTTCATGTGAACAGGAGGCAGTTAGAAGGATATTCATTAAGTTTATGCTTTTAAGTTTATGCTTTTAATAAACAAAAGCATACTGAAATAGTTTAAACAACATTTCAGTGTATATTAAGGattttttcaatattaaaaattttaaacaactaCTTATTTCtgttatgaagaatttttaagcctattaaataaatattagatC-AGAGATTGGCCTATTAAACAAATGTCCTTGCTGCATATTAGTCTTACACATTCTGTGTTTATGGAAAGACCT---------AACAAGTGACAAAAGAATAGCTATAAACTAAGAAATTCCCTCAAGCaccaaataataaagaaa------aaatatgcccACCTTGAAAGTGCatttatgcttttcatt----tctt---agaaGTTAATTCCTATGTGGATGCattctaaataaatatgtaagatgTTTATAGAATTACACTATCTTTAAATTATTGCTTTACTAAATTGTTTATGTGTGTTACAACAAAAAGACATGCTCATTCAAATGTCATAA---AAATCTTGCAtgcttttgaagatt---tttttccaaaaccTGAGATGGGGAAGTcacaaaatat----gtatttacagACTATCAAATTATATCTCAGCTACTAAAGGTATCTTAACTAGCTAGATACCATTGATCTACTCTAAAGCTTTGTCAAATAA-GCTTTCTTTCCTCAAATTGATTCTCCGTTTTGCCTTCTCATTTTCTCAACAGCACACAGCAGGAATCATTGTCtacaaaaggaaaacaggatCTAGCTGTAGGCATATGTATGAAACAAAGAGATCtcgattaaa-gaaataaaaaagacgtCTGTTTCTATTTGATCTTCAAATTATTGATCTTGTCAATCGGTTACAGTCACTGAGTCCTATTTAAATTTGTAATAACCATTGTCATTGCAGTTGTATCATTAACCACTTTGAAATTCTAAGAAATTTGCAAGATAATGTTATGTAATATTAGTGTTGCTTTGACAGTCTATTTA-TATTAGTATGTGCTATCATTCATCAGCATACAATTAGTT---AATTTCTTACAATTAAGAAACCAAGGACTGTGTCTAAAGTTCACCTCCACATGTGCTAAGGGAGGAAAAAGTTCAGCATTGAGTGTCTATCATgactatttcattttcttaggtAAAAGG---------------------AAACAATAAGGGCAGTGAACTGTACCACTGGTCTGAGCTTTACATAGAATTTGATTAGTAAGAATGTTCAATATTGGTGAAATCAAGAGAGGGACAAAGTGTCTTCCTGGAAAAATGTAGATTTCATGAAAATATGTAACAGGTACAATTTAAGTGAGAGTCTTGGTCATCATCACTGTCTACTTTTCATCCTTCTAATCCAAGTGTGACAAATTTCTGCTCTATCTGTAACCATGTGACACCATGTGACAGTGTCTCACCTTTACTTCATTCATATCATGTGCAGTAGGTTATCAGGAAAGCCAACGCTCTGCTTAGCAGGCTAGCTTAGTTTATTTTGGTAGACTTTTCTTTACCCAGTGGAAAACTATTGCTATTCGTCTCTTAAAATAGTCAGTAGCATGTTGAAATACTTCTtcactcaaaatataaaaagatatgtACTGAATAAGCAGA-GGAGCACATGCTCCTGCCCTATGGACTAAACACCCTTCAGGTCTTGATTTCATGACCTTCCATCCTTTCCACTGGAATTTGAATTTGCCATGCTGAGTCTGCTTACCCTTAGGATATGCATGACAATTGCAAACAACTTTGCATAAAAACCAGCATTTTTTGCTTGAGctgtttttatctttcttcttaaaCTTCTTAAACATCAGAGTCTGTATATAAACCCTTTCTTCAAGtttgaggacatagctcagcagcaca-gcacctgcctggtaagcaccaggtcttcagtttgatttttggtaacaaataataataagaataataaattcTTTCTTCTACTTTAGTAATAGTAGTGTAGATTTAATGAGTGATGAAAAGAATAGATTTGGAAATCATCAGTAGCACATaacagcatattttttaaaagtacatgaaattctattaaatattttataattattgaaaTTGTGAACAGTTGCTAGTATCCTTATTA---TTTATGTACAAACTGTGAAGTACAGTTTAAAAGCTCAAAAGCAATTCTGtagcatttgaaaacaa-------aatttgaattgtctctattttcataaaataatacttcAAAAAGCAATTCATTTTAGTATCTTCTTGCTTTATAAGGATTTGTCTATAAAGGTGTAATGCAACATATATTCATTCCATGAACTAAATATGTTTGTCCATTAGTaagtacaatttttttaaaaagtaagtacatgtaacgttaagtgaaataaa-----tggaaat--agattattttaataaaaaatacaaacat-taataATGC----ATCATTTTTCTCAT------------GAGAAAAATCCAAACTATGagtaaattaaagagaaaa

a score=28502
s chr3           150427841 2753 + 160039680 ATAAAGTACAAAACTAGAGATGCAAAA-ATGTTAAATTGAAAAGGGAATAACAATTTGAATATTGAAGATAATGGCTTGCACTATATCCATA----ATTCGTACCAACTCTTCGCAATTTTCAATAGAGGGG--------------TATGTA----TTTTACCAGTGAAGGATCTGATGGCACATAGACAATTCCTCTGGACTGTGgaa--gaggaaagacatgacaccaagggcaaagtgaaagagtagcaggaacctgtaacaggagcatcatgatggcgaaaccacaggacgagacgagtcatttcgaaagcactaaggacaatttaaatataatttcaaagagagatgtcgcagga---gatagtcttcttgctgggccagatggtgtaacattagcagatgacattggaaggactgagctactattttgcttctgttttctcaatcaggataaaaatgatattcaaactgcaaagg-taggaccaacaagggaatccaacactga---aaagcaagagataataagaaagcacttagctgctcag-tgaggtcacattaccagacagagatgcattacCACACCCCTCCCCCCGGGCTGACATCCTGTGTCACTGGATGTCAGTGTCCACCACACTTGGGGAATGTGTC--CATCGTCCTGCCATTTTCCAGGAGAGGCCCTCCTCATCTTTTCTCTGTAGAAATGTGTTCAAGTCCTTTAGCCACTCTGTCTGTCTCTGCCCTCTCGCC--TAAGATCAGCTTCCACTT--AGCTTCTGCAACGAACTTCCCCAAAAGAC-------------------CAAGAGCAT----GACCAG---------------ATTCCTCCTGAAGGGCTTTCTTTCTAGAGAACATGATTCTTTGGGTGTTTTAAGCAGGCTTTCTCATTGCAGCCTTGGGAAGGCCCCTCTGACACCTTCTCTTAGTACTTGATCTTTCCTCGGACCTTGCTTACTGCTCTGCTCAGTGGTCTAG---GGTGTTCCAGTGCATTC--------------------------------CAGCA----GGCTGCCTCTCCTGGCTTGCCTGTGCTTTGGTTCAGTCACTTTGTTTATGCTAATTCTTCTGAGCA-CTTGTTCTTTGTTTCAAAGTAGAAAA-----TGTTTCT----ATACTATGAACTTTCCTTTTTTATTTCTCAAAGTAAT----TGTGATTTATGCATATTCAAATCCTGTGAGCTAAATGTTC------TGCTGACATAATTTTCATTGTTATTAAATAAC-CTACATTG--GTACGTACTTTTGGAAAATCACTAGAAAATAAGGTATT-TTAATATTCTTGATTTGTAAGATTATATTTAGTATTTCTGAAGTAAA---ATTTTTCATAGAAACTTAAAATATAACATAGATTTAATGAGTCAGAATTA-TCTTCTTATTCCCCAGTACTTTTCTTGTATACTAGTCCCTGTAATTGGAGTGAGTCAGTTCtgtatatgcctgtatgtatgcatgtatgtatgcctatatgtatgcatgtatgcatgactgtacttatgcatgtatatctatatctgtttatgtgctttagtccacatGTCAACTCATGCAATTTACCTCATTCTTTTAAAAGTGGCAAAATATTCATTAGAAGCGATCACACCATACTATAGTAGAGGAA---TGAATATGAGCAAAGAAAAGATTGTCCTTCACACAGTGAAGATCTTAATTCGGCTGTGCCTA-------ATTCAGCATGAGGCTTAATGTAAACAGGAGAATGCTGTGGGCTACTGAAATCAATTTTGTTTCTTAACCCACTTGAGTTTTCCCAAAGCTTTTACAATGTAAGTTCCTGTCCTTGGTGACAGTGACTCTATCATTTTAGCGACTTTCAAAAATGTTTTCCACGAACTCTAGAACT----------------------------------------------------------------------------------------------------------------------------------------------GTGTT-------------------------------ATAAAGCATGGACGTCCAATATGCAAGAACT----------TCTAAAAAAGAAGCAGCTCTTCTGCCAACTCGGGACACCATTGACACTCAGACTTCTCTAAGAG------------------------GGAATGCTTGAACTGCATCCTG----------GCTCAAAAATACATGGAACTCACTTGATTGACATGGCCATATATCTTT-ATTAATGAGTAGATATCCATCAAAAAATGTGACTCTAAATAGGCATTGGTCTTACATTGGTTCTCATTTCCAAATCTCTTAGGGCAatatatatatatatatatatatatatatatatatatatatatTTACTGAACCAGT--AGCTATTAAACAGATACATGTGATGCTGAAGCTAATAGAGTGAAAGAATTGTAGTTTGAAGTTATTCTGGCAAGGCGTAATAATAAAACCAACAAGA-ACAGGACAGAACTCGGGA-----------------TCATAAGCAGCTCAGGGGGGCTGTGTTCTGGGACACTGGCAGG-TGCCTTTCTGTCCAGCCCTCAGCATGTGATCCATTGTAGATTATAGTGATATTGGTGTCTGTCCCGTGAGTGGTCTGCCCCATCATCACAATGTGATCCACCATAGATTACATTGAATTTAATGTCTAGCCCTGAGTGGTACTGATTTCA-TACCATTCAGAAAGCAGACTCCAGT--GGAAGGCAGCCTCTCACTTCACATGCTCCTttttagcaggaaaatttataaactgattcatgatttgtgaactacaaggaataaaa-ggaccccacaagtatgtctgatgagaaacagcaacaaaaactgggtatgtatttccttaaa-gggaag----agaac----tcacaaataaatgacagcactccaaatgattgaaAA-------ATAAGGCAAAAAACTGTATACTGTCTGTGGTGGTCTAGATTCATGGATGGAAACTGTCACAACTA----AGGTCACTACACAGTATG---CTAGCACATGGGAAATTATTGAAATGACAGCAAAA
s HiC_scaffold_1 137029447 2881 + 233722169 ATAAATGATAGCACTATGGGAGAAGGATATTCTGATTTAccaaggaaataa---ttcaaatacaggaaataat-------attaaatatatggtACATTAATATCGCCTCGGTATGATTTCCAttaaagagaaggggaaaaggttttatttaattttttcacatgCAGACAATTTTGGGG-----AAAGAACTCGTGAGAACAGTGGAAATGAGGACAGACATATCAC-AAGGCAAAACTGAAATAGTGGCAGAAACCTGCAAAGATAGTGTCAAGGAGGCGAAAC-ACAGTGTGAGCCAAGCCTTTTGGAAAGCATTAAGGACagtttaaatataatttcaaggaaagactCTGAGGGACAGGCCTGCTTCTTCCCTAGGCCAGATGGTGTAACATTAGCAGATGACATTGGAAGGACTAAACTcctattttgcttctgttttctcaACCAGTAAAAAAATGATCTTCAAACTCCAAAGGGTAGGACAAACAAAGGAATCAAATCCCGAGATAAGTGAGGAGATAGTAAGAGAGCACTTAGCTACTTAAATCAGTTCACATTACCAGGCCTGGATCAATTACA-------TCCCCAGGGCCGGGAATAACTTGTGGCTGGG---CTGTGACT----CACCTCGTGAATGTGTCTGCTCTACTCTATCATGGTTGCTGTGGCAGCCTGGGCATTATCGCTTTGT-------TAGTGGAATATTTCATCCAGTCTACTTGGCTCTAGCCTCTCCTCATTGAGTTCC-CTTTTACTTGCAGCCTCCAAAAT-AactgtcaaaaaagaaaaccacacatacacagacacaaagGCATATATGATCAGTCTCTCTTACCTAAAATTCATCCTCAAGA-----TTCTCTAGGGTACA-----CTTAGAGTGTTTCCCGTGAG-TCCCTCAATTTAGCACCAGA---GTCATTCCATCACCGTCTCTTA-------------CCCTGGACCTCACATA-TCCCATGCCCTGTAGTCTAGCTGGCTGTTCTCATGCGCTATAACTTATGCACCACGCCGACCTTTTCATCTGCAGCATTTTGACTGGCTCCTTTGACTCGCTTGGATTTT---TCAAAAACGGTGTTAATAATAATTGTGCTTTGTAGTTTGCTCCAGATTTTGAAGTAGAATAAATATTGTATCTCAGCATCCTCTTGACTAGG-TATCTTGTTTCTCAAAATGACGGAGTGAGATTTACATGTATGAAAACCCTGCAAGCCAAGTCTTCATTGTTTGTTGGGTTAAATTGAATTGTAACTAAACAATTCTGTACTGCTGTAAATACT---GGAAAA--ACCAGGTAATGAGACATCATTAATACTCTTGATTTTTAAGATC---CTCAATATCTTAAAAGGTAGCACACTGACATTATAAAATTCAAGTAGTACATATATT-AGGCAGTGAGAATTAATAGTCTTGTTACCC--TCTCTTTATCATATACACATTTCTGCAATTAGAAGTAATTATTTCAGGGTGTG----------------------------------------------------------TGTAAGTATAT----------------ACTTTAA--CACTTATGAAcaaacataatat--------ttttaaaaagttacttactATTCCATAGTGATGAACATACCATATTTTAATACATGAAAGGTGAAAGAGGAAGTGGAAGAAGTTATCAGTTGCATAAT--AGGCTTT--TCCCTTTGTAcctagttttttattttacattagg---AATGACAATATCAGAAagat-------------ctcaatctttttttttg-----ttgttgttctcttgAAACAATCATAACATAAGCATCTTTGTGTGCTGGGAATGATTTTACAACTTTTGGgactttaaaatgtcttttatattAACTTTGGAACTTAAATTACACAAAATCACAACTCCATTGAATAAAATCTAAAaggaactctctctctctctctctctctctatatatatatatatatatatatatacacacacacacacacacacacacacacacacacacatactgaaatttgtgtttttatttttgtgcagtGGTTGTCTAGAAATGACATGGCTTAGGCATCCAATTTCCAGGCCCTCTTATATCCCTCTGAGACAGAAACTTACTTTCTCCCAAT---GAATTCTTCccattcttaaa-------aaaagaaaaaagaaaaagtaaagaaaatagaaatggttAACAAATTTTTTGTGAGGTTTGTACACAAGAGGAACCAGAAGTAATTTAATCATAGTAGTGATACATTTTTGATCAATTAATAGATATTTACTTAGAAAAATGTCTAAATCTATGCCTCAGTGTTCTATTACTAGTAATTTTCTTAATTCttatattaaaaaagataaacatataaTTATTCA---------GTGAATGGTTAATAAACCTGTGGAGTTAATAAAC---TATATGTGGAGATGAAGAAAACACTCTAATACAATAGCAATACAAATGT-CTCTgatgagttttaa-atttaaatcaacaaaacataaaatagaaatcaaGGGAAGTACACACAGAGAGCTGTAAGCAGTTTAGTGGCAAAG-GCTCAGGAATTGTGACTGACTAGATTTCCGCCTAGTCATCAGCATGTGATCCGTTTTAGATTATACAGATATTAGTGTC--------------------------------------------TAGAATA----------------------TGAACGGTACAGATTTCATTACTGTTGAGAAATCAGATTCCTTTCCGGAATATCGCTTCTCATTCCCCATGCCATATTTTAGCATGGACACTT-CAAATCGAAACAC--CCCAGAAATGATGATCAGTAAAATGGATCTCTAAATCATATACTATGCGAAATAGTTTAAATAAGTAGGTTTGTGTTTACTTAAATAGGAAGTGTTAAAACTACATAATAATTCAATGGTTGTAGT----ATGTTTGAAAGTTTATCTATAATGCCAAAATTCAGGTA--GCTTTAGAAGTTCTCAATTAATGGATAAAATTTGCAGAGACAAACATAACTCATTGCATGGAATGAATTTATCATTTAGAAGTTTcctgaaatgataaagaaa

a score=80901
s chr3           150431068 4685 + 160039680 [encoded data, 5116 characters]
s HiC_scaffold_1 137032400 4856 + 233722169 [encoded data, 5116 characters]

a score=18186
s chr3           150435745 418 + 160039680 AGAGCAAATGTTAGAATTTTTAATGCTCAAAGGCTAAT-----ATATGACTACTCAGCTTACTGAATCTTTATTCT-ATCTCCTGAA--GAATTCTCCATCATACTCTCTCTGACAAAGAGAACACACTATGTTCATTTGACAAGCAATTTGTATTTCTAACTAGCTTCAGAACAATTACTTTTCCCCTAATTGCTAAAATGTCTGGGGCTGTATTTAGATGGCCACACATGCCTGAGTGCACCAGGCCACA-TTTAAAATTCAACCAGCAAGCTTGTCACTGCCCCAATCAATAGTAGGGAAGCACAAAAATTCAGACCACCA---GGCCAGTTAGCCTTCTCATTTCACATCAGCTACAAGGTGCAGCCTGGCAATGTTTGATTTAATTAATTTCAAATTAAAGAAA---GGAAACAAAGAAAGAAAAGAA
s HiC_scaffold_1 137037730 424 + 233722169 agAGTAAAGGTTAGG-CTTTTAATGCAGAAAAGCTAATTATCAGTAGCACTGCT--GACTACTGACTCTTCCTCCTGAGCTCCCTAACCTTTTTCTCTAGCATATTCTCCTTGGCAAAGAGAACATACTCTTTTCCTTTGACAAACAATTGATATTTCTAACAAGCCTCAGAGCAGTT-TTTATTACCTAATTGCTAAAATGTCTGGAGTTGTATTTAGATGATCACACATGCCTGGGTGCATCAggccacattttaaaattcaactaGCAAAAATGTAACTCTCCCAGTTAATAGTAGTAAACCATAGTAA-CCAGACAACAACTGGGT--GTTAG-CTGTTCATAT-ATATCAGTTATGAGGTATGGCATAATGATGTTTGATTTGATTAatttcaaattaaagaaaaacaaaaccaaagaagaagaagaa

a score=34442
s chr3           150454496 1020 + 160039680 ATCAATGAATACAGGTAAGAAAACATCCAG--------------CCTAGTGCCTATGTCTATAGTGTTTATATAGAAAATAGCAACCCATCATCCAATTTTCACCTCTTTTTGCATTCAGCACTTA----TTTCAATACTTAGCATTATTTGGGTAAGATGTCTGTTGGTTTGGAGCCATTCATTTTAAGGTGCTCTCATTTGCAAATGT---TAAATGAATACTATG--AGAAATTTTTCAAAAAGTCGCACAGATGGCCCTCAGAAGAGAAGCAAGTATTATGCTCAAGAAAGATGATAGCTTATAGGCTTCTTGAATAAATATCT--TCAGAATTTTCTACAAGTGATCT------AGATTGTTTACCTGACACACATGGTTTT-GAGCATTTTTGTGAAATGACCTTCTTCAATTGAGGAAGTCACCTTACAGAGAAACTTATCATCACAACTGTTCAGTTTTCTCCTTG-GCCAGAGATTTAAAACCTTACCACAAATACAATGTAGGAATCCCACTGTGAGTTCTGTTCTGTGCTCTCTCTCTGCTGTGCTCCTCTGACATTCTGAGCCAGATCAATCCATCAATTTCTTCCACCAGGAACTGAGTTGCCATGACGTCACCATCAAGTGCAGCCCTGTTCTAGAAAACCAACTGAGCTTGACCAAAATGAGCAGCAATTTATTTTCAACCAGGGATACTCCGTCTCTGTAGAGTTTTAAATATCAGATTCTTCTGCTGATGTGGGTCCAGGCCGATCTATGCAGGGCTAAGAAGGGAGGAG--GAGACAGAGCTTTGTACTCACATTCAGTAAATCACTCCAGCAGTCCAAGTGGGATTCT-CTGCTGCAAATGAAAGGCGAGAGCACATTATTGTTTGAATTTTCAAATAAAAAGGCAAAATCAGGTTTCTTCCTTTCTTTCTTTTTTTCATTAAGGTTCCAAAGAACTGACTGATGA-----TGAATTGataaataaaataataattaatttGGGAATC----AGAATTTTGTGAACTT-GTTGCCAGTGCAATATTTCTATGGGCTCCATATTTCTT
s HiC_scaffold_1 137058556 1010 + 233722169 ATGAATCAATACATGgaagaacaaatataaaagtatCGGTAGCATTTTGTGCTGATATCTTTGATTTCTGTACagaaagaaacaactccaaatacatTTTAGGATATTCTTGAAGTTCTGCCTCTACCAGTTTCAATGATCAG-----------TCAGATGA----TGGTTGTGAGCAGTTTCTCTTAAGATGTTCTCATTTATAAATGTCATTAAATAGATAACGTGCAAGAAATTCAT-----AGTTGGACAGATGCCTCTGAAAATTGAGGCATATATTACATTCCAGACAGATGGTAT-------GATCTTTGAAGAAATCTCTGATCCAAACTTTCTGTAAGTGACCTGACAGCAATTATTTTACCTGAATCATACtgttttagaatatttctgtGACATGACCTGCTACAATAGAAGAAGCCACTCTCTGGAGGCATTTATCATTACACCTGCCATGCTTTCTTTTCACTCCAGGGATTGAAAATCTAACCGCAAACACAACCCAGGAATCCCACCATGGCTCCTGTCCTATGCTCTAT----GCATTGCTCTTTTAGCATTCTGAACAAGATCAATCAATCAATTTCTTCCACCAGGAACCGAGTGGTCATGACATCACCATCAAGCTTAGCCCTGGTCTAGAAAACCAATTGAGCTTGACCAAAGTGAGCAGCAATTTATTTTCAACCAGGGAGGCTCAGTCTCTGTAGGGTTTTAAATATCAGACACCACTGCAGCTGTGGGTACAAGACTACCTATCTACAGACAAGAAGCAAAGGGTAAAGAAAGATCAATGTGCTCATTTTCAATAAATCACTTGATTAATCCTGCTGGAATTCTGCAGCTGTGGGTGGAAAGCAAACGGAGATCATTATTTGGATTTAAAAGTGGAAAagcaaaatcaa----------------tttttaaaaatcaaagttc--agGAACTGACTGATGAAAGAGTGAATATATAGAGAACATTATA---AATTTCAAGatcaaaaaaaattttgccaCCTCAGTCACTTACTCA----TTCTGTAAACTCCATGTTTCTT

a score=31326
s chr3           150469933 1852 + 160039680 GATGGCTGAGGCTCTGCTATTAACTTAGATCACCAGAAGGGACCTGCTCAATAATATTTCCACAAGC----------------AAATGAGCTGACTAATG--TTAACT-------TTCTGAATGGTGT--------------------CTGTGAATGGTATTTCTCAAGATACCTTGGAAGGGTTGGGTATAAAGAATATAGGCATGAGAAAGGCGAATGAGACTAGGTCTAAG----------ATGTAAGA---CACCACTCAGACATCAAATACATGAATCA----AACCCCAAACACGTATGCAGAGAAAGTCATTCCATTTGGAATTTTG--TTATTACTCAACATGG-----------------ATGGAAGATTTTCCTCTCTTAAAACCAATGT---GAAGCACATTGTTACCCTTATAACTGGATCACAACCAGCAAAGGCTCCTTAATCCATCATTCTTTTAGACACATAACATCCAGTCCCAGAAAACAGACATGAACAGAAAAGTAAAGAAGCA--TATTTAGAACCAAAGGCTCTCTCAGGTCTGAGTAATATTCCC---CCCAGGCTCAGTTCTCCACAGAAGCGTAAGATTAGAT-----------------AATGACAATATCATATTATACTT------TAAAACTGTCAGCGAAATGTAGACTATTCACTTTGTGAATTTAAGGTTCTTGATTTGAATGAA-CATTTCACAAAATGCTGGAGAGAAGGAAGCAGAGGAAACGACTGTGCCCCTCTTGGTGAATTACACAGTAAGAGGGATTAAAATTTTAATGTTAACTGAGGAAACCCAGAGAAGTGGAAATGGTCTAAAGAAGAACACTGTCAAAGATTCTCTTGGAGGCTGAATGCCAGACACTTCAAGCTGGGTCCATGCAGCTCTGCCTCTGGGTTTTACTTAAA-TGACATAAAGCCTG---CTGTCTT--AGCTTTACCTGTG-CAACAAAGTG-----------------------CCTGAGTTCCACTTCTGTGTCTAGTGAGATCCAGTTGCAAATACATATGTAATAGTGGTTTTACATAGC-TGCCAAA--CGTTGTTAAAATACAATATTCAATGAAAA--CAAAGTATGTAAATTGATAAATAAGTGATTAAATGACTGAAAACAATCCCAACACCAATAGCTCCACCA----CTCATTTGCCAGAAGTAAAGAAGTTGGGAATTAAAACCTCTGTAAATAGAATAGATGTGTCATAGAATCTAGGCTGATCTAA-TAAGTTCATATAGATATAACTCTATAAATGATACATTTTTACTTCGAATACGACTGGATAACTTTTTCCatttaaaaaattattctattatgatttttatatataCATGTAAGATATTTTGCATATATTAACCCTATTGTCCTCCACTGTCCACCTTCCAGTTCCTACCAATTTCATTCTATCCAAATGTTCCCCACTGCAAGTGATATAACTTTTTCTTCCTTAATGGTTTAA-GAATAGGTCTCTAGAGACCTGTAACAGAGTAAAGTACATTTTTACTTTATACATATTTC-------TCAGATTTGTTCAATGCAGCAATGTCTGTTTTGTGTTTACTGGTAGAGCATAATTCTGAGTTATTGCACATACACAGACAAACATTTCCTCCATCAACATACAT----------GACAAATTTTCAAACTTGC-------GCAGTTATGTTTAT-------CCCATTGTTGGATAAA--------------ATTACAGGGACAAAAATGATCAATATATGAAACTGTCAGTTT-CTTAAAACTTTAAGTTTGGATTGAATATATAGTACCCATGGAAATTAATTTCTGTGTCCATCA-----TTTTAAACTGAAGTA-ATTTAATTAGGTGGCTTTAGTCAATAATTTAACCAATGCTATTTTTTTTTATTTACCACTTACAAAATTT---GCAAGTTAATACAAAGGAAGTTGATAAAAATCATCTAGTATTGTTTGTATTCTATGGCCCTGAAGTATAAAAAGGAATAAAAGACCATCAATC
s HiC_scaffold_1 137070392 1863 + 233722169 GACAGTTGAGGCTA----ATTGTTTTGAATAACTGGAAAAGATGTGTTTAATAAA---CCCACAAGCTCATAAGAAATTATTGAAAGAAGTTCACAAATAAATTAACTCAGTAGCTTGTGAAATGTGTTAATATTTATTAGAAACCTTCTACAAATGGCATT-----------CTAGAAGGAGATGGTGGTAAAACATATGTACA---AACAAGTGTACCAACTCAAGACTCAGTACTTCAACAATGGAAAATCACTTTTCCCACACATCAAG-GCATGAAAAACAAGAACCCAAAACAAGAA---ACGAAAAGGTAGTTCATTTGGGATTGCGAATTTTTTCTCTATGTGTTCTAAGCTTTTTTGTACAGGgagtacttttttttcttaaaacaaacgtaatgaggattttttttttttttataaatagctCACAAACTATCAATGCTTCTTAATCTACCTTTCACTTTGACTGATAACCTTCATCTCCTGAAAATTTACCCCAAAACGAAGTTAAGGGcacaattttttaataaaaaagtctTCTTTAGGGTTTAGGAATATTTACTATCTTGGACACGGTTTTCTCTTGTTGTTTATAATAAAATGGCACTTTCAAGTTTTGAATgacaacatcatattaaattCAGAAAGTAAAACTGTCAGCAAAATTTAAATCATTCACTTTGTGAATTAAAGATTCTTGATTTGAATGAATCGCTTTATAAAATTGCCAAAAGAGAGCAGCAGATGAAACAAAGGCAAAA-TCTTGATGAGTTGTACTATTTggagaattaaatttttaatgttaactAAGCAAAACTGGGG---TGAATACAGTCTAAAGAAGAACATTATCAGAGATTCTCTTCCAGGCAGGATGCCAGGCAGTTTAAGCCAGCTTTCCACAGCTTTACCTTCAAGTTTTATTTAGATTGAAATAAAGCCTGTCCCTGTCTCTAAGCTTTAACAGGGACAATGAAATGTACAGCCTCTTGCTCAACTCCAACATTAGCTCTGTAATTGTGTCTAGTGATCTACATTTCTGAATATATGTGCCGTAGTGTTTTTACATAGCTTGCCAAAGTCACTGCTAGAACTCATTATTCagctaaaaagtaaaataaatgaaaagaaatataaatgtctaaataaataaa--------taacactggTAGCACTGCGGTTACTTCATTTGCCAAAAGTAGTTTACTGGGGAATTGAAACATCTGGAAATAAAACAGATGCAACCTAGAAATTAGGTTGACATAATTAAGGTCATTGAGACTGGCTTCTTTAAATGACACACTTGTTTTTCTGGT--------------------------AAAATCA-------GTAATTTTTAT-----------------------------------------------------------------CCCCAATTCCATT-------------------------------------------CTTACTGTTTTAAGGGATAGGCTCCCAGAGACCCTTGAATCAGCCATGTAGTTTtgcattttaagaatatttctaaaatgtcatATTTATT-----CAGCCACTTGTATATTATGTTTAGTGATAGGTCTTCAGTCTGAGCCATTACAGAATGTTAgacaaatattttctgtgtacatatttatcatttaattaaaaagactTTCAGCCCTGTACATCAGGCACATTTGTTTATTTGGAACCCTCTTATTTGATATATTGTTGCATTGATCATAAcagaaat-aatattatatttatatattactatTAATTTCCTTGAAAACTTAACTTTGATCTCAGTGTATGTTATGTTCTTAAAATAACTTAGATTTAtgcaaaagtttttcaaaatatagcATTTTTAACCAGATTGATTTATTTGGTAA-GTAACCAATATTA------ATTATTTACCATCTACACAATTTTACATTAGTTAATACAAAGAAAGTAGGT-------ATCAAGCAGAGTTCTTACACCACTGTTGTGCTgcctaataggaaataaaagattaTCATTC

a score=68179
s chr3           150479630 2518 + 160039680 AAAGGGTTCCCACCATTTCACTGGTAAACTTGGGGATAGGAAATTAAATCTAGCTGGAGTTT-GTTCAGATTTACAGAAGACAATAGGAGGCTATTAATAGTAACAACAACAAACAATCCCATTATAAGTTCCCTAAAT-CATTAAG-TATTGTTTTCAGTCTAAGGTTAATTACATAGCAAATAGAATTTTGCTTTTTGACAATGATCAGTGATTGCTATAAATTGCTGAATATAACCTTATAAGTTCTAAGTTTCTTTTGGCAGCATTTATTTGATCTTTAACATA-AACTCATTTCTTCTGT-TAGAGTGCTGTCTTGACTT----TCCTATTGACTATAATATTTGATAGTAACATGAAGGAT-TCAAGAAATGAGTTAATGAGtaaaatatattatttattttatactttttaaatCTG--------AGCACATGTGAATTTTCAATTTGTTGCACAGAC-TAACACAGTATATTTTCAATTCATTATTGCAACTTGACTCACAAGAGAAACAT---CATAGAATATTTTAAAGTCCCATTACTGTGAAAATGTATGCAAACTCCC-ATGGAAATATAGACACCACATTCCCTTCATCTGCAGTGATTCATATTTCCATGTGAAATGC---------AGGCTGGACCTCAA-GTCAGTATGATGATG-------AGGGTACTCATTTTATAAAACACGTTGATAACATTTCAT-AAAACAAATCCTGGTGTTAATTTAATGCTTCAAATGACTTAGGAATTTTAAATAGTACATTTGGGTCTGGACATGAAATTTTCCTGCTTATTCCATGAGAGCGAAGGAGACAAAGTAGAGAGGTTTTCAAGAGTTATGAATTAAAGGAGAATTAAACAAATGTACAAGGTATTCGGGTATTTGATTCAATTTAAGGACATATCAATGAGAGGTGGGTACAACATAAGGTTTC---AAGTTCTAAATATAAAATATACATACATACTAGTACACATGGAATGTTAATTTTCTACTCTAAATTACAATTATAGCTTTGAACA------------GAGGGAAAGAAATAGCCAACTAGAAAATGTAAACCAATTTGTCCTGAATATTTTT-CCCTAGTAAATTTTGGAACAG--TCTATGCAGTAGTTTTTTTTTTTTTTTCCTTTTCCTCAAGTGGGGAAGGAAAAT-----CTCTAAAGATTATCATATTAAAACACATATGGCATAAGACCTCCTTTTACTTACCAAAAATATTTTTGACAGAAGAGGGAAAGGGCTAGAATCTGAGAGGGCAATTTGACACGTCGCTTTTAAGTTCTATTACATTGATTGATTTCATAAAATCAGTGAACTCTTTAAACATTACAGTCTATTCACTTATCTCCTTGTAGACTTCACCAGATGGCACCCAGCAAAAGAGGCAAGCCATCAATCACACTGTGTCTTTCCCAGTGCCTCTCCTGTTCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgtgcgtgCTTCCTAGTGCCATTTGCTATGGTGGCAGCTCCACAAATCCATTTTCTAAAACAGTCAGCTGCAGTTGCTTGGCTTCCT-TGACAGTTGGCCCAAGTTTCAGGCACTAG--TGAGAAAAATAAGGTACACTGAATCTTGTCCACATCTTCATATAAAGAATTGTGTGTTTT-ATCAAGGGGGCATGTCATAGAAGACATGGG----------TCTCCATTTGGTGTG--AATCTGTTA-------CAATTCTATCTACAGATATATTTTATGGGCATCTCATCT--CTG-TGCAACTTCA-TTGGGTAGCCTGAATGAATAAAATCTTACATTAAGAAATATCTCTAAAATTCTCACAATATGTACAAATTAAGTTCAAATGTGTCATGAAGTGGCCCATCTGACACTATCTTGTCAGCCACTTGATCACAAATGGCTTCAATTCTCTGATTTACAAATGATATCTGTCCCCCAAAGGACTCTTCTGAAGGGCAATTTTAGGTACATATAAG------------AGGAAAGGA-AACTAAATTCAAAGGAGACATAAAGTCACTTTCTTTAAGTTAATATAAATCTCAA---------------------------CTCTGGACTA-------------CTATTGGTTTGTTCTTAAAACCCTCTTCTACCAGTATGAGCAGATGCTGTTTAGAAATGTTAGTATACTGAAGAGAAAAAAGCATTAAGATCAACAGAGTGCTAGTCA-CTTTTATTGGAATTGATAGTAAATTTACTTCAACTTGTTTAAAGATGCCATAAGATCATTGGGAGCTCTAGTGAGATGCTTGTATAACCTATTTCTGCTATAAATGATCCA-TTTATTTCAATAGGAA-CAAGATTGTTTGAAGGCA-------GAGTTCTGCTATCATTTTGTTATG----------------TGAACAAGAAAATATATTATcttt--------------------ttctatacctataacaaagttaatggttgagggccttattttatagtaaacatagataaacaagagaaagtccacacaaatgtatttaataaattttatctgtgatgggaacattcaaaaaagaaAA-CAGTAAAGTCAtgtgtgaatgtgtgtgcatgcatgtataagcatgtgtctg
s HiC_scaffold_1 137076756 2582 + 233722169 AAAGGGTCTCCATTTTATCA------------GGTCTAGAAGATAAAATTAGGCTTTAATTTTGTCCAGATTTATACAAGACAGTGTCTGGTTATTTCAAGCCCCAG-----AGCAATAGTTctataaattcattaaaaatactaAGACATTATGTT---TTTAAGAATAATTACCTCACTAATGGAAATTTGCTTTTTAACA--GAGTTATAATCATTACAAATTGTTGCATTAAATTTAGTAAGTTTTAACATTCTTTTAAGAATAGTAATTTTATCTTAACTATATGAATATTTTCCACTGTAGAAAATGCtgtcttaatttaaaatttcacccACAATAATATTTCAAATCTGTGTGCATATTCTCAAGAAATGAGTGAAATGTTATAATTAGTTGTCTTCTTATTGCTCTTCTAACACATACTATATAATAtaagtgaattttaattttatagcacAGATATAACCTAACTTATTTTAAAGTCATTGTAGGAATTTGActtataagagaaaaatattcatagaatattttaaagtctTATTACTGTAGATATTTATGTAAATTCCTTATGAAAATGTAGACACAACCTTCCCTTCAGCAGAAATCATGTTTGTTTTCATACGAAATATGTGCAGTAAAGGCTGGAACTTACTATCAATA-GATGACACCTTTCTAATGTACTCATTTTATGAAAAGTATTGATGATATTTCATTGACAAACATTGTGAagttaatttaatgttttaagtaACTTTACCTCTTTTAGCAGTATGTATGAGTATAAacataaaatctttttattttctctaagagGGTGAAGAGGG---AGGGGGATAGTTTGCAAAGGTTGAGAACTAAAGCAGGTTTTAATAAACATACAAGTTATTAAGAAACCTTATTCAAATTAAGAATCTATCAATGACAGGT------ATAATAAGGTTTCCACAGGTTTTATACTGAACCGGCATAGCGGTGTTAGTACAGTTTGACtttgcattttccactctaaatTAAAGTTATAGCTTTGAGCACTGGGGAAtgttaagagaatgaaataatcAATCGCCAAATGGGAAATCACTTGTTCTGAAAATCTTTGCTCAAGAGCTTTTTGGAATAGAATCTATGCAATAAAATTTGTTCCCCTTTTCTCCAGctagcaaaggaaaagaaaataaaagcttttaaaattatcatattaAAATACATGTGGCATAAGGCCTCTTTTCACTTACCAAAAATACTTTTGACAGGAGATGGAGGGGGTTGGAAACCGGAAAGGCAAGTCACTGTGTACTTTTTAAGTTCTATTACGTTGATGGATTTCATAAATGTAGCaagctatttaaaaattatactgtatTCACTTATCTGCTTGTAGTCTTCCACAGATGGCACCCAGCAAGAGAAGCATGCCATCAATCATACTGTGTCTTGCCCGGTGCTTTTTCTGTCCC--------------------------------------------------------------------ACTTTTTTGTGCCTTTCAGAGCCGTTTGCCATGGTGGCAGTCCTACAGATCAGTTTTCTGAAACAGTCAGCCACAATCACTTGGCTTCCTCTGTCAGTTGGCACAAGTTTCAGTCTCTCTCCTAAGAAAAGCTAGGCACAGCGCATCCTGTCCTCATGTTCATATCAATAAGTGTATACTTCAAAAAAAAGGGCATGTTA-AGAGGACGCGGGTGAGTTTATTTCTGCAGTTGGCATGGTAATCTATTGGTTTACCTAGTTTTTCACAATGATAGACT-----GGCAGTACATTTTCCTGTTGCAACTTCATTTTGATGGGTTGGATCAATAAAATTGTGCATTCAGAGGCTTCTCAAGAATTTTGACACTTCTTAGCAATTAAGTTCAAATGTGTCACGAAGTGGCCCATCTGACAGTATCTTGTCAGTCAGCTG---ACAAGTTGCTCCTATTGCATGAATTATAGACATGATCAGTTCCCAAAGGTGTTCTTCAAAAGGGCAAGAACAGT--CATCCAAGTGTCTTATCCAAAGGATaggatatttatatttaaaagagaaa-aaattaacttCTATTAAGTTAATAAGCACTTCAAACATTACTAAAGAAATGCTTGATACTTCTAAGTACTAATAGCTATTATAGTTATTAGTTTGCATTTCAGAACCTATTCTATCTGAGTAAACAGATGTTACAGAGAAATGTTAGTGCACCAAGGTTGAAAA--CATTATG-TCCACAGAATTCTAAGCATCTTTTGGTGGAGAGGATG--AGATTTACCCTGTATCAATGAGTAAAGACATGGGGTCATTTGGAGAAGTAATGGAATGCTT-TGCATCCTGTCCCTTTCAtaaatgtctcattttattttattctaaagctTCTCTGCTTGGATACATtcatctaggtttttttttttttttgttttgttttgttttgttttgtttttttaaggggTATACTTTCATTATAGGAAGAAAAAAGTGACATCCCTTACTTACAGT-AAGTCAA-GGCTGAGGCC-----TTTATGACAAAc--aaattaacaagagaaaaatcataCAACTTCACTTAATGAATTTTATGTGACTCGAAAACTCtcaaaaatgaaaagccaaaaagataaagatatctGTGTTTTCATGGAGAGTCAAGCACATGTCTG

a score=26841
s chr3           150485579 1578 + 160039680 taaatataattGATTACTAAGGTTAAGAGGTGAATATTATATTATTCCTAAATGGAATTCCCTTTTGTCTTTAGAGTAATAC------AAAAATATTAAGAAAAACAGTGTACTGAAAATGTATTTGGATTCCTATAA-GGTCAGACCAAC--ATTTGCCTGAAAATGTATAAGATCTG-CATCCATTTGTATGTATATTTAACATCAAATACACTTGATGACTCCACA-------GTATGCTTCAGAAAATGCAATGACTTGCTTGGAACATTCCTGTGTGATAGAATTTTATGTGACAACCTGGAAGCTTAGAAAGCAGAGTGTTCCAGCATAAGACAAGGGAGGCAAGCACGTGCTTC-------TCAAGACAG-ACTGATGTCATGGAATCCCGTGTGTTTCCATATAACAGGGAACTGTTAAAAACTGTTCACTCAGTATCATCACAGCTATTCATCTATTGTGAGCTTCCTAGGGAACT----GACAATTCTACCAAGAAAATCACATCTTTTGTAGCTGAGAAAATATCCTCTCCGATTTCATCAATGTTAATAAAGTGTGTGTGAGGGAGAAAAATCAACACCACTTAAAGTTAAACCTGAGAACCAAAACCAGATGAAGATACCAAGCAATCATCTAGATCATTATCTGTAAA-CATTTAGTTTATATATTAGATTTTCATTATGATGTTTTTCTGAATAGCTTATTTTAATCATACATGTGTTGT-TTCTGGAA-AGATGTCCACAGAATTG--CTGTGCTCCAGG-TATATGGCCTTGCAGAGAACACTCAGGCCTTG---AGTGGATGACTGAGATCCTGCTGTAACCTCATGTGATCAATTAACATTTACTGAACAGTTAACATGTTCACCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCTTTACCCTTCCTGCTAAAAGAGGAGGCTTTTAGTGCTGATGGCATAGTGGCGGGATAGCTATGTTTAGAAGAATTGGTAGAAAATCTGAAATCTTTTCCAAGCAGAACACTTGCAAGGCCAACCCATTATTTCAATCCCC--GGAGGGATAAAGTGGTCATTTGCATCATTTCTGAAGTGTGAAATGAGAGATATGTCTTTAGCACTGTTTAGATTTCTAACCACATGAAGAATAGCAAGTGTTTTTGTTCTAACACAAAATGAGGACTTAGCATGATTTCAGAATACTCACGTCCTGAGAAAAAGGCTGAAAAACAGCATTTCCCTT--GGGGTT--------------GTGGGACATTTATTTATTTGTTCACTT-TCTCTCTTTTGTTTTGATTTTTCAGGGC---------------ATGCC------ATGTAAAAACATGTAAGAAAACCACAAATATATTCTCCTGAACACTCCCAAGCCATTAAACCAATTGAGACAAATTCCAGTGGAAAGATGATAGCATATGTTATGATTTACAACAGCATCTAAGACATGGTGACAATGATGGGCCACACA-GAAGGACTGAGTATGGAATTACTCTTTCCAATATTCACGTGGTAATCTGTATGGGAGTTTTCATATGTGAAAGGTAATCTAACAGAGAAGTCAAACTACACATTTACACCAATTCTCT------TTTGTCTTGCTGA
s HiC_scaffold_1 137080215 1505 + 233722169 TAACCATAATAAAT-ATTAAGATTAAGAGGTATTAATTGTATTTTACCCTCAAAGAATTTACCACTGGGTTCAGAATGAGACttatttgataaaaaaaaaaaaaaaagtaagttgaaAGCAT---TATGTTACTATCATGATAAAACTGATTTATTTGCAT---------TGAACTCTGACATAGATTAGgttaaa-atgaaacattcaaaACGGctaa--attacaaatataaatgcaTCCTTGTGAAATTGCTGTGCATTACTT----------TGTGTT-TAGAATTTTAGGTAAAAGTATGGAAACTTAGGAAAGGAAAAG---CAGCCCAAGGTCAATGCAACATGCAAGTGGTTTCCAAGTATCAAGGCATCATAGTTCTTACATAACTCACCAAGTTTCTACATTACAGA-AACTATTAAAAATACCTCATGCAGTAATGTAATAAATAC----ATATTCTAAACTCCTTAGATTAATTTATGATTATGCTACTAAGAAAATCATATCTAttgcattttgaaaaatgtcttatCAGAGTTCATCAACACtgataaaatatgtgaaaagag--aaaatcaaCACAACTTATGTTCAGAcctgaaaaatcaaaacagaataaagtaaaaagaaatgaccTGAATCTCTgtctgtaaaataatttatttatatgctGCATTT----------------------AGCTT--TAGCATCTTGTATGTGTCATATTATGAAAGAGAAGTTTACAAACTCAGCCTGGGTTTGAGGGTGGATAACCCC-CGACATACGTACAAGCCTTTGCTAGTGCACAACAAAG-----GCTGCCACCT----TTAATAGTTAACATTTACCGAAGAGTAAACACATGCACAAGTGTTCTTGCTCTTAT-----------------------------------------CTCTACCATTCCCATTAAAAG-TGAAGCATTTAGCAGTGACAACATGGTGCCAGGATGGGTATGgttaaaagaaacaa-aggtaATCTGTAATCTTTTCCAACTGGAGCAAAAGGTATGACAACCCATTGTTTCAGGCTTTAGGGGGGGGTAAAATGATCTTTTGCATCATTTCTGCAGTGTGAAATGAGAGGTATGTCTTTGCCAGTGTTTCGATTTCTCACCACATTAAGAGTTGCAAGTGCTTTTGTTCTAATGTAAAATAAGAAGATGGTGCTATTTCAAAA--------GTCTGTGGAAAGGACTGAAAACTAGCAATTTTTTTCACAGATTGCCCTTATTCCCAAGTGggctgtttgtttatttgcttacttgtttctttttttttttttttttttaattctctttctctcatttgatCCCTACCAAATGTAAAA-----CAGAAAGGACACAAAAGCA------GGCATATTTCCAGACATCTAAGCAAAGTGATGCAA---------GAGA---------------TCTACTTCACAGCAAGACTGTATTTCAAGTAGCAAAGATGGGCCATTTATTAGGGGCAGAGTGTGGAATTAGGCAGTTCGCTACCCAAACAGAAATCCCAGTGTGAACTTTC-TGGGGAAATGATAATCTTATAGAAAAGTCACAAAACACATTTTGACAAGTCATCTTTAAGATTTGTGATGCTGA

a score=23527
s chr3           150492770 490 + 160039680 AAACCGTCGTATTTGAATATGAACTTGATAACCATAGGAAGATAA-AGGGTTCAGTTATGCTCTGCCTCATCTGAGAACTGGACTTTCTTTGTTAGTTGGCACAAATAAATTCCAGGAAGAGAGACTCA--------GATCTTGTAGTCACTCAGATGTCTCC-TTGCTGTCTGACAAACAAAAGAAAATGTCCCTTATAAACACCATTCCTCATCTCAAACAAGCTCTAGCATTTTGTCTTCACCGCATTACTAAGGCAGA-GCCTGGATAGGTTACAGTAATCAATCAAAGTCCCTGTTAAAAAG--------TTATCTCTATTTTAACTACTCTAGAAATTCTCATTTGGGGGATTCAATTCACTGAGCCAGATCAATCCATACTAATGCAGCCATAGTGACCTTTATCTTTATTTTCCTCTTTCAAAAATGCAATATAAACATAAATGAAAGAGAAACCAATTCCCATAAAGTGAGCTGTCTTTCTTCTTTTCTTTCTTGTCACT
s HiC_scaffold_1 137089030 494 + 233722169 AAATAATCTTACTTGATTTTGAGCTTGA---ccaaaggaagaaagtaaaatttacCTGAAATTTGTCTAAACCAAGACCTGGAGCTTTTATCGTAGTAAGTAAAAAGAAGT-------ATAGAGATTCAAGATGCCGGAAATTGCTGTGACTCCTAAGTCTCTACCATTGTCCAATGAACTGAAGAAAATGTCCTTTATAGACACCATTCCTCATTTCAAACAAGCTGTAGCACTTCATCTTCACCGTATTGCTAAGGCAAAAGCTTGTATAGGTTATGGTCATCAATCAAAGTCCctgttaaaaagaattttttttttctctattctaaCTACAGTAGAAATTCTCATTTAGTGGATTCAGTTCACTGAGCCAGATCAATCTATACTAATGCAGCTATCATGACCTTTATCTTTATTTCCctctttcaaagaagcaatataaacataaataaaacagaaagcaatTCCCATAC----AGCTGTC-TTCTGATTTGATATCTTGTCATt

a score=34043
s chr3           150495119 3411 + 160039680 TGTGTGTGTGTGTGTGAGCACCTGTAGAAATGCATATGATTTTAAGTGCGAGTATCTATATAACATTTTATTATGTAACCAA-CATAACACCAGAAAATT--ATGTTTTGGAGTATATTATTTTCCAATTCAGGAAATGTTTACTGAATGTCTGAACTTCTGAT-AGCAAAATATTTGGTACACAATCTTGTCATCTAAAAAATTGAATAGATGGTTAAATAAAACTTATTTGACCAAGTTT-TAATTGAAAAGCCAACAAAAATCTTATATTCTAAAAGACCATTTTGAAAGTCTATATT----------TTATG-------------TTTTAGA----------------------------CACAAATG--------------AATGCAAATTTG---------------------CACAAAAAGAT------------AAAAAAATTTAATAAGGTGTTAAAATGATTTTCCTGAAATAGTGTA--------TATAG---CAGAAGTTCATTTGTG---GAATTAACTCATTAAATTCTAAT--GTTTTTGTTTCATTCTTTCTGAACACCATTCAAAGAGAAAAACAATAACACAAAACAAACAAA-CAAATCTAACCAGGGAAA--ACTTTTAGCATTTAC--------TTTATCCACGCAGA--------------------CATGACCTGTTAATTTCCTTAG-ATGACTATTTTGAATAGTAACATTATGCAAAGGGCTTTAACATGGTTTAAATTTT-----------------cactta-------------gatcactttggacctatgtgtagatacctgtggcatcatcattacaatctatgtagccacacacccaacagctacaaga-gtgaatattgtgttctttttttTATCTCATCCATCCTttttctttcctatcctttttgcttcccttccgttttctcccatttcctttttcttctctcttctcctcacctatcttctcatatcctctatccattctctaccttctcttctattttctctacctttctcaacctccctcatctccactcattccttcttctctctctccttcct--cttctttcctttcctctcct-cttttctacctctGTTTCAGTctttccctcctcctatccttccacctattctttctttctctcaatccctcctctcttcttttccctcctctactttctctcttcatctcccttcctcttcctctccTACCTCTTTTTGTGATAAAATGACTTATCATTCAAAACTTATAACAATGAGttgttaactataaggattactttatatagcaggattatagttctcataattgaaattttatattacaaaatgatctccttttctctcatccaaacttcctggaagttcctgtgagtttaactgagataaatatcttgtcaaagtagaaccaggcagcattggtcttgttttgacttgcttgtttcacattatataaggttatccaggctattatacatgtggtcacaactagaagactttccttcagcttattaactgaataatattccactgtggacatatgtcgcaagatagatccaaacatta--------ataatc-----------ttttatgtctcaattattatgaaccatgtttccatccatagggtagttctagagttggtttacaatagtacttccaaatcttcatgaatagtagttcaaaactaaaataatgagttgtatactagtcttatttttaacatttttaggaatctctgtgatgcttcttttcccacataaaatattcaccattttacattcacaaacaagtgaattcaggcattaatttctccacatctttgccagttccaatctgttgttatttt--taatagtcattatggcaggtgtaaagtgatgtTATTTATTTATT---GTTTCTATTGAAATGGTGCCTCATTATGTGGATAAGAGTTTTATATCCATCTGCATGAACCATGTAAGCCATATTTTGATTTATAT-TCCCCTATGAATTGCTAGGAAAATTTGCCTATTTACCTATATGTTACTGACTtgtcttctgtgagaaatgttatgtttttatgcatatttgttgaatttaggtttctgctcgtgagaagtaaaagtttgttacagactttgggaattaacctcttctcagatatttgacttgaaaattttctcccatG----ATA------TTTCATTTTATTAAGAGTTTTCTATCTGCAGACACTGTGGACTTTG-----ATCTCTTTATATCCTGTCTTTAGGAGCAGGAGCATTGGTGAACTAATTTCTGCAACATAT-TGAAGACATAATATACATTATTGACTGAAATAAAATAAGGGCATTTATCTATAAG---ACTTTACTCATTCTAAACGTCTAAAGTTTCCATATATAGAATATCAGTCATTTAGCTAA--TCCATCTCAATTTGTACAGATAATTAATAGAAATAAATATAAGAATCTTGGTTCTTTGTGACTGCATTAAAAATGCACATATAGGATAACTATAAACC-TTTCTTATTTAGCTG-----TATGTCACATGGTTTCTATAGATAATTATG-TAAGGATTAAATGTATCTTTTGATC-ACAGCTATCAGATTTCTGGGGAAAAATTCTACCAATGAGTTTGGATTCAAACAACTGAGTAAAG-TATT--ATAACAGAATAAAATTCAACATTCTAAAATTATATCCTAGTT--TTTAACTAGTATTTATTTCTAATAAATAATAATGCATCAATTTATT--AGTTTTGT---AAATATCTTAAAATAAGTTCAAATTTATAATTGTGCTTTATAAAAACAGGATTTCAAA--TTCAGCCTGAATTAAGAAAAGAAATGTACAAAATAGACTCATTGTTCACGAGGGTACACGCATTTATAAGCTTGACATGCTTGACTACCAACTT---TTTTTTAAATCTGATTGATGAAATTCTTGTTTCAAAGTACCATTTAAAATGTG-----ATTTCAAACTCCTCTAAGATGTCATCTTCCTAAATACCTCTAACTGCAGTTGGAATATGAATTTGAATCTGAACTCTAAGG-CTTGATTGTCAGGCATGCCAAGTGTAGATAAAATGATAATCATTCAACCATTTATTTCACTTTATTACCATGTTAattcaattcattcaacatttgttgagtgtccattatggggctgtcattatgccaagcactTATAACAAAATTTGTGC-TAGCTATCAATGTTTTAAATTTGTTTAACAAGCAACAATAATCATATTTCAATTTTATACAGCCCATTATTTTTATAGCTCTAATCTATCATTTTATTTAAAAAGAAACATGTCCAAAAGTGGTTGTTGTCACCTATATGTAATTTTTGCTGTTGAAATAATGATAATGATTACTGAGTTTCTACTAGACTTCCATTCTGAAATTTCTAGGGATGACTTATTTATACTACCCCTTTGATTTTTATGTCTAACAAATTTTGAATGCATAGA---ATGAGATGCTAAAAATCTA---ATCTTATAAAAGTGCTTTACATATATCCATGAG-----AAAAAAAGACAAAT-TAGACATATTTGCAGCCGT-TACATAGA-GGagagagagagacagagacagagacagagacagagacagagacagagaca
s HiC_scaffold_1 137091714 3181 + 233722169 tgtgtatttatatataaaca-----------aCATACACTTTTAA-TGCAAAAATCTTTATAACATTTTTTTGCATAACAAAATATGTtaccagaaaattttattttctaaagcatGATTTATGCCAATTCAA-AACTGTTTGTGGGATAGCTGGCATTGTGCTGAGTAG----TTTACTGTGCAGATTTTTTATCTTGAAACCTGTCCTGTGGAGTGATTAAAATTTA---GATCAAATTTACAAatccacagaaatgaaaaatcttatCTTTCAAAAggttaaattaaaaatctatgtTGAGCCAGGTATTATGCAaacacctataattccagaattAGGagagctgaggaaagaggatcaccacaagtctGAGGTCAATCAGCAATACATGTttatttcaaggtcagcctgaagaaCACAATGAGActgtgtttaaaaaacaaaaacaaaataaaaagtaaaaaaaaaataaataaaaggctgtAATTCAAGGTATAGAAacattagtacatatttacacaAAGGAACAGGTCAAtgtttacttaatttttatttcaaaactt--gaacttcttttaaa----aaatgaatagtatttattttgcaaaacaaAGTTGTTCAAGGACATTATTCTCTATATTTGcaaaatgcctttatttttgaaaatcactCTGAGAAATATTGTGCAAAACATGTTTCTTCCTTTGTTATGAATATATt--atgctcttatttttaaaattactttagtgAAGTATAACTGATATGAGCACAACTGCATACATTTAATGTGTACAATGTGGTCGGtttacacatatat----aaacatatgatAGTATTGCTGTGATTTATGTA------------ACAGACATAAGCCGGGGTCCTTGTGTCACTTTTTCCCTTACTCCCTTCCCTT-------CTATTCCCTTcagttcccttcccttccctccctcttctctttctttctttctt---------------------tctttctttctttcttt-cctttttatctttcttttcttgctttct--------------tgctttctttctttcttccttccttccttccttccttccttccttttctctttttcttctctctctctctctctctctctctctctctctctctctc-------tctttctgtctctc-----------------tctctctcgctctctctctctctctgtctctctctctccttttctcttgtttcttttc------------------------------------------------------------------------------------------------------------------ttcctttagtcT-----------------------------TTTAATC-----------------------------------------CTTGTTCTGGCTTGCTT----CACTTGCTAAAATTTCCTCCA--------------------CATTTATAAGGCTtt-------------------aaaatattccattgtgtatctATAACACCATCTACATCTATGTATTACTCTACTTATCATCGCTagaattgtttttgtatttttgcaaTTGTAAATAATGTTGTTGTACATGTAGGAATGCAGAAATCTCCTTATATTCatggtttcaatttttttcagatatGTATCCAAAATTTGATTGCTG-GTTAAATAGTGGTGCTATTTT-AATAGTTTGAGCTATTTCCATACTGTTTTCT-------GTAGTTGCTGCACCAttctaaagaaaaatacacatg-------GCTTTAATTACTCTGTATATTTGCCAACATTTATGTCTTGGAGTTTTGACAATACTGACTG-AACATGTATAAAGTAgcatttcatggtaattttgatttgtattaag-----------tAATACTATTAAGCATTTTA------------------ATAGAGTTATTGTTATCTTCTATATATCCTCTTTGA-------GAAATATTTGCACA--------------ACAcccttgt---------------tcattttttcttgattattttttc--------tttttggtaatgaGTTATGGAATTTACTtacatattttggaaaataactCCTAATCAAATATATTGTTTGAAAACATAGTTCCCTATTTCATAGGTGCTTTtcactttattgattttttttaatcttcagcaattttttaattttgatatatctctttctatttt-tcttcatg----------ttaATTGTCTTTCTGGTGTTACATTCATGAAATCGT--TGTGTCATACCAATTTTGGTAAAATT-GGTAGCTAATTTCTAAATCAATGTGATGTATTCTATGCATCCAAA-TCCACATACTTAGCATTTCAAAAGCAAATCCAAATTCTATCTGAGCTGATGCAAATGTCTAAAGAGAAGATA---ATGAAGCTCTGTTTTGCACGATTGC-CGAAAATCTAAAAAATAGAATAGCTGTAAACAGCCTCTTGATTAACTaaattatatattgcatattttgtgTTGATAATTGAGCTGCaaattacatgtttttttttttttgcttttgtttgttttctag--aaaaattaGATCAACAAGACAGGatataaacaatttaataaaaatatttaatatcaatATAAAActtataattat----ttgttttttaattgtttccaaTAGCACTTATTTGTTGTAAAAAGTAttgtagtattttgttttagttttttttaaaacat-tgaaaataaatctaaagataaaattattccttttgaaacaaagattttcaaatttcattttgagatattagaa--aatgtttgATGTGAACCCATGA--AATGCAGATACAGCGGTTTACAGGGTTGAGATGCTGTACTAGTGACATCACTGTTTCTCATCAGATTGGTAAAGCCACTACTTTAAAACACACTTTTCAATATATCATACTTTTAAACTCCTTTAAGTTTTCAGCTTACTGAATCCTAACAACTTCAGTTGGAATACAAATTTGAAGATGAACTCTAAAGTCTTGATTGTCAGACATGCCAAGtacagacaaaa--ataataa-tcaatCATTCATATTCCTTTATCTCCATCTTAATTCAATTCATGCCACATTTGT----------TTATCAAATGGTCATTATGCCAAGCACATAGTACAAAATCTGCGCTTTTTtatcaatgttttaa--ttttttcacagT---CAATCATGATATTCTGATTTAATGTGGTCTATTATTTATATAGAAAGAACCAGTTGTT---TTTCAAAAGACAC--------------TTACTGTCACCCAAGTGTCATTT----------AACTACCATATTCATTGCTAGATTTCTTCTAGAATTCCATTCTGAAATTCCCTGAAATTGTTTATTTATGCT--TCTTTTATATTTGGTATCAAAAAGAACCTGAATTGATAGAAGTATAAGATCCTAAGAGTCTAAGGAtattgaaaaaagaatttaaatttagtCATAAAATACTAATAAATGATTAAtccaggtatatatatatatatatatatatatatatatatatatacagagagagagagagagagagagagagagagagaaaca

a score=37895
s chr3           150503529 1846 + 160039680 GAAATGTACAACAGAGTTGGCGGCTCGTTCAGAG-TAATCAGAAAAG-TCTAGCTTACTACTTCACATGGGACAAATTTTAAAAAGACTGATTCTATTTATAACATATATCTCTAC-GATGTTAGTTACTGaataatttgtaaaataaaaaaataatttCTGTCTGTAGGGCCACTGGTCTTTTTCAAAATCAGttttataaatatttctaaatatttttttaaCCTGCGCTTACGTGG----ACAGTGGTAAGTCCATCACTAATCAGTTTGCA-TTAGGTATGCTGCATGCCAAG--------GAGGTCACGACCCAGTTTCTCTACTGTCAGCTAAAATAGTCTTTTGTATTCTAAGAGAAATAAAGGGTCCTCATCTTCACCAGAAGGTATCTAATTATCTAAAGAAAAGTGATTAACTGATTATGATGAATAAATTAATCTCTAAGGAGATGCACAAATTCAGACACTTCTAATTAGAATAATTTTCCTGGGACATGCACAAAAAATTCTGTCTACTTATTAGCAATGATTAACAGAACAATAACTAATTTTTGGCAGCTCCCTATAAAATTATTAGAATCACCCTTAGGACACAGATTAAGCAGTTGTAAATCCATATCAAAGTTGTTTTAAAATACATGAGCAAAACTGCCAGGCTGAAGCACAATCTCTATTTCCATTCAGAAGAATTGTCACTTCCACTTGCTACAATGTTGTCATAATCATCTTCATCTTCATTA-----ATTATTGAGAGTGTTCCAGTTGGC------TGGGGGTGATTGACATGTTTTATATGATGAATTGAATGTTGTTTCTTATAGCAGCCTAGTGAATCCTGTGTTAATGTTAAATCCAATTTAATGCAGGTGCTCACTCAAAACTTTATTTTGCCTTCTTTAATCTATCATTTCCCTTTTGTGACACTTATCAATTTTTATCACTAGTGTTTTAGA-TCATTTTTGGATTTT---CATAAACTTTATCACTAGTATATGAAATATTTTTTTAAAATTTACTGAGTAGTTGACATAAATTCATTAATATGTTGAACTATAGTGGACCAGTTACtttaaaaaatatataaaaa---taaaGACAA----AATAGTTCTGATGTGCCATGTATTTAGAAAGAAAAAGAAATTTGACCAGAGG-TTGAAAGAAAATTTTCAACTTCTACTTTCTGCTTCTACTTTGATCTATAAATGGGAGTTGGAATGAGGCAATGTA------AGAATATA-TGTTCTGTGCTGTCT-----------------------GTAACA-------ATATCATCTTCATAGACAGCAG----------AGAATTATA---------CAAGACAGGGTTCAT-------------CATAAAATCATTAGAAATTTAACAAGAACAGAAA-------------------CACTCAGGGGAAA-----------------------------------AACATTTAAAT-TATGATAGCATACTCAAGTGAAACTACTTTGTGTCTCTTTCCAC------CAGTCACGTATATGTCACCTTCTTCATGAATGCAGTAACTTTCTCAATGAGATGATGTCTATGGCATTCATGTTGACTTCTAAATAATGAATGCTCATCAGAATAACTGATAGTTTTTCACGAAACTGAGCCAATCAATCAAGCAGACATGTACAAATAATATTTGTCAGGCTATTTAAAGCTTGTTATGAATCCATATGCACATCAAATCTGGAA--TGTAAATGTGATAGAATAAAGCCAACAGTCACTCTGTGGAGGCAAATAGGTACAGTATCAAACATGCAAGTAGGATCCTTCTAGCGGGTTATCATGGGCTGGGAAGAGCATGAGATAGGT---GACCTGAAGCAAATGCATTCTGTGACACTTACTGGA---GAAC---------------CATTTGAGACC-TGACTCAGCAGTAAAGGAAAAGGATCCGAAGTCTGATGTGTTCTTTAAGAGCCAGCTGGAACCAAGTTTGAACATTCCC
s HiC_scaffold_1 137098991 1952 + 233722169 gaaaaatgcagcAGTAATGATCTCTTATTTAGAGGTAATTTGGGAGGATCTAGTGTGTTATGTTGTGTGAGAAAAGTAGTAGA--GACTGTTCCTATTTGTAAAGCATATTTCTACTAATGTCGGTTACTGAATAATGCATCAAATGAAGAA-TACTGCTCTTCAATAAGGCCACTAGTCTTTG-CAGAGGCAATGTCCTAAATACTTCTTGA---------AGCCTGGTTTTATTTGGTACCACAATGGAA---CCAGCACTAATCAGTATGCAATTATGGGTGCCAGCTGCTCAGAATGTGTTGAGCTGACTTCCTAGTTTCACTAGTGCCAACTAAAGTGGTCTTCTCCATTCTAAGAAGACTAAAGAGTCTTCTTCCCCACCAGAAGCTACTAAATTATGTAAAGAAATGTGATTAACTGATTAGGA---ATAAATTAATCTCTAAGGAGATGca-aaatttagacatttttaaTTAGTATAACTTTCATGGGACATCTA-GAAATGTTCTCTGTTCTTATTAACAATGATTAACAGAACAATAACTAATTTTTGGCAGCTCCTCACAAAATTATTGGAATCACCCTGAGGACTCAGATTAAGAAGTTGTGAATTCATAGgaaagttg-tttaaaaaaaataacaaaaagcaaca-acTTTAATATAAATTCTATTTCTAACTGGAACACATCTCACTTTAATTTgttatgattttgttttcatcatCGTTATTAACACAACCAATACTAGTG-GTGTGTTCTATTTGGTACACCAAATAGATGCTTTACA--TTATATATGATGAATTCAATTTAATTCCTCAAGAATGC--AATGATATCATTGTTGTTATTGTCT-CAATTTAAAGATTATGCaca---agaac---attttatttctcttgatcCA-AATTAACC-----TGAAATTTCTC------TAAGAGTATTGtcttagatttatttttcaattttctccatgaatattttaaataat-tttgaaatttttatttgaattcttgtga-taattatgtttaatttatta-------GAGCTACAGTGAATTTAgtaa-tgagaaaatatataaaagaactaAAGATAATACTTATTATTCTTA-GTGTTCTGTGTCTAGAATG--AATGCATTTTAATCACAGGATTGAAATAATAGT------------CCTTTACTTTTACTTTGATTAGTAAATCAGAATGAAAATAAGG-AATATAACAGTTAGACTATATTGGTTTATAATGATTAAAGcagaatgaaaatgacaaaagtaacaGAGTTAGATTTTATTGCCTTATACATTAGGTATATTGAAGGAATAATaacataaaactaaaacaaaattcataGATGATTTCCActatcagaataaaaaaaatttgtgtacaatgaaaattttatttctcttgttcttCATTAACCTGAAATTTCTCTAATTGtgttattttagattttaaataactGCATTTAAACGTATGACCACATACATAAGAGAAGAtactctgaattttttctttcattgtacaGGCATTTGAATGTGACCTGTTTAGTGAATGGAATTTAGCTATCATTGAAATGATGCCTACAATATGTGTGTAGTTTTCTAAATCCTTGGTGATCACcagaataattaata-tttatcacAAAATCGTCTTAAT-AATCAAGAAGATGTGTGCTAATACTATTTTACAGAC----CAAAGTTTGCCAACACTCCATATGAACATTTGATTTTAAAAGAGTATGTGTGATGATATAAAG-TAGAAGCCATGCATTTAAAACAAACAGGCAGAGTATC-TGCATGCAGGTAACAT-TTGCTGACAAGTTGTTAAGTACATCTTAGAATACAGGTATGgtaaaaaccaaaagcaaatgtG-CATATCCCATTCATTGGAGATGAACTAGAATCAGAAACTACATCTGAAATTGtgac---agagtaaaataaaagaag-taaattttGACATACCATGTAAGAAGCAAGTATAATAAAGCTGAAACAATTTC

a score=28710
s chr3           150544695  987 + 160039680 TTGGTGGCATTGTATAAGGTGGAGAAATCAA--GAGCTGATGTTTTCTTTTCATA---------------------AGATATCTTA---TTGAGAATAAACATTCACA-GAAAGTGTAAGAATATAAATAAG-TGTGGTGGGTCTCATATTGTAT-TTTCACTGTGTACATCTTGTCCATATCTAT-----GTCTAGTTTAAAAT-AAGATTCTGGCCTTGAAGTTCAGTGTACCATTTAAAATTATTTCTATCATGTATAAATAAATGTAGATAAATTTTAAGCCAGGTTTTATGAGGATTGGCCTCTCCGTGTGCATAATAGGCTCTTAGCTGATAATGAAGTTTCCTCTGCAATATATTAAGTCTTTATGTATTATATAAAACTCTATAATGAA-GCATCTAAAATATAGTTATTGTAAGCAGAGTCTGGATAAATGTTTTCTTTGTTATAATTGGTCTAATTTTCTGCCATCATTATTAATGATTTCCTAAGCATCCAATTCTTTCTCACACTTGAACTGAGAAATGGGCAATTTTTCAGGGCTATAAACA-TTTCTGTTGAATTATAACTGCACCCATTATCTTAAGAGTGAACTTTTCCTTAGGGCATAATCACT------------------------CTTTGCAATTATAAATAATAG-TAATTTTACCTTGGCTATTATAAACTGCAGGAAGTCCTGCATAATTATTTTGTCTCTTGACCTATAAATGTTGTCCTACTTGC----TGTCCATTGTTGCCTGTTTGTTAGCAATGTCTTCTATTGTTTATTCTGGACTTAGTTATGAT------ACAATTTCATAAAGATATGATTTAAAATAAAACATACGTGTTGTTTCATAATATACAGACTTAA--GACTATAGTTATAAAAGACTGAGGTGGTAACTATCAATGATAAGCAAGGCACTGATCCCTTAAGATGACGTTTAGATATTCTAGAAAAATAAGTTTACTACACTATGCTGTTTATGATATTTTGAAATTTGTTCATACAGTATGAATGTATAGAAGACTTAGAAAGAAAAGAT
s HiC_scaffold_1 137138360 1027 + 233722169 ttggcAAGATTGAAGAAGATGAAATAATCAGttgactttttatttcattttcatatcaTTGTGTGAATACAGCTAGAGGTTCGTTAATTCTCAGAATGAATATTCACATGGAAGTgaagcagaataaataaaatatgatggaTTCGATAGTATATATTTTCCTGTGCATATTTTTTCAATATCTATTTTATGCcttttttgaaattgaaattCTATTCTTGCATTcaactgtgttttaaaaatttgcttctgTCAAGTATAATTAACTATAGGTAAGTTTTAAACAAGGTTTTATGAATAGCATTCTCACCACATGCAAAATAGGTACTTAACTGATAATGAAGCTTCTTGtgcaatatattta------atatattattaaaaattctatgatGTATGTA---AAAATATAGTTACGATAAGCAG----CAAGTAGATGGTTTGTTTGTTATAATTAGCCTAATTTTGTATCATCATTATTAATGATTTCATAAGCACCAAATTCATTCTTATACCTGGACTAAGAAATAGGCAATTTTTCAAGATCATAAAAATTTTCTATTGAATTATAAGTACACCCATTATCTTAAAAGGGACCTTATCCTTAGGGTGCAATCATTCTGCCCGCAACAAAGATTTTTAGCCTTTGCTAttgtaaataataattatttttatacttactaTTATAAACTGCATAAAGTtctaaaaaattattaagaacCCTGACTCACA----TTACTCAAATCAAGCAGTTTTTATTCCTTAATATATATTAG------CCTCCATTAATTATTCTAGGCTTAgttgtaataaataaatattttgttcaggctatggtttaaaagaaaaaaaa--tcccctttCCCAACAGGGAATATTAATTAATTGGAGCTATTATGATTTGGGGCAAAATCCA------ATCTGC-AGATACTG-TGGGTGATGCTGTAGATTACATACTgtgcaaaaataaatttgcaaTGTAACA-TGCATTtgatattttgcattttgttaatATAATTTGAGAgttaagaaaactgaaaacaaaaaaat

a score=38666
s chr3           150567045 2107 + 160039680 AAGATAACACAATCAAAACAAACACAGCATTCAGCTAAATA---AAAGTCATTTGATATACATAAGAGCCAAAGAAGATCATTTTATTATGGGTCAGATACTAAAAATATAAGCCCTTATA-TAGTTTCTGTAGACAATGGTCACATCTATGCCATT-TTCTTGTTTAAAATCTTCATTTTAAACTATAAATATAATTAACATTGTAGAGTTGTCATTTTTCAC-----CTGTTACAGTCTTTATAAAGTTTTAGTTTTAAGGGCTATGAAAACATGTGAGGTCCTGAGTTAAAACCCCAGAAATGAAAAGTTATATT-----TTCTGGATAAATGTAGCAGAGCTAGAGTAAAAGTATCCTTTTTTTTTC-------CCCTCTCAAAATTCAACAAATATATGAATGTCTAAAATCTTTCGCGGCAGAGCTAAAGGA-TGAGAAAAGCAAGACCTCCAAAAGAAAGGACTACAGAGTAATGCATTAGGTCAAAC--ATGCTTAAGTTAGTGTTAACTTCA-AAGCAACGGACAACAAACATCCTTTCTGTGGAGTATGGGGGAGTGCCCACTATGGGCAACAGAAAGTTAAGTCAACCAGAGGGTAGACACAGG------CCTGA---------CTATGTCCAGAGGCACAGACCCAGGAGGGCAAGGCACTGGATGTGAAGGAGGAA--CTGGCTTTGTTGTAGTAGAGGAAATTTT---AATTCTAGATCC-TGAAAGTTACCAATATTCTATATTCTTTGTGGGAAAA--------ATG------CTAAAACAGTATGAGGTATTCAATTATAAGCAATATGAACAAAGTTACCCAGGCT-CTATGCAAAGATAAATGTAATGTTTCAAAAAAAAAAGTTAATTTTTCAAAAGCTGACAAGCCCACAGAAAATCTGAGCATAGACTGACAAAATGATAGTAA--------TGCATTGTTTATGACACATAAAATGACCTACTAACCAAAATATAGCAAAATACAGCATTAGGTACAAAATTCAACTCACTCTTCATGAAATGTGGTAACTGCTCTTATTATTTTTCTTGGAGTCTTTCATCGAGACACCA-ATAACTTCTTTTCTGAATAGGAGTTAGAAAAATAGACCC--AGGTTTCTGGAAAGAACTGAGATCTG------------TGTCTTCTGAGTCAAGCACCTCACTCAGTACACTTTACACAACGATTTCCTGGACTTGGAGAAAGGCAGCC-TGGTATTTAGATGGCAATCATTTACGTGATTATTGGCTATTCTCTCTCAAAGCTTCC-CAGTGG---ACACTTCACACATA-GAGAGTCCTCGGTAATAGAAGCATAGATCG-GTAAACAGTCCAGTTAAATGCTGTTATAGGCGTATTTCAC--TTTATCTATTCAAACATTGTAAGTCTGTTTTGGACTGGAGGTTCAAACAATCTTTAGACTAT------TTCTAAAAAGTCATTTTCTTTAAGTAACCATCTAAGTTAAAAATAAACTTTTGTCAGCAGAAAAAAAAAATCATTTCGCTTAGTGTTTGCAATTCTCAACTGTGGTAGGACAGAGGAATCAAACTCCATCAATTGTATGATAAATAACCCAAGCTGTGGGATGCTCTGACTGAGGAGGGGCAGGTGAAAAAGCAC---ATTTGCCACAGTTTTACTGCTTAAAGGATAGCCATGGGATTCG-GGTTTGAAGTAAAGGCTACATACTTTAGGTTTGAAAAAA---AAAACTTCTCTTGTTTAGCTTCACTTTGATTCTGGCAGTGAATAAATTCCA--AAGTGCTCCTCTTCCTGAATCCATACAGGTGTAACTAGCTGAA-CCACGGGAACTCAGTCCAGTTCAGCCTGCAGCCTGCAGCTCATTGAA--------ACACCCAAATTGACCTGC-----TTTTTTCTTCTGAAGCC-CAGGTCTCCTATTGGCTGGGGATAGCTATGAGAACACC------------CCAGCTGAATCTGAGCATAAAC--TTTTTTGGGGAAAGGGAATGGGTAGACTTTAA-----------------------------AAAGTGGTCAGTGGTACTTCTGAGTCCAGACACCATTATTTTTCTTTATTGCTTGCAATCATAT--------AGTTTACATAATTTTAAAGATCAGCTG---TACACGTGCATATGTAGACTT--ACAAAACTTT--ATCAATTTGTCACAAGCTTTGGA---------AATATTTAAGTAGATTTGGTTGACTTAAGTCTTAA--CATTTTCTGGACT
s HiC_scaffold_1 137166422 2171 + 233722169 AAGATAGACTGATCAAAACGAACACAAAAATAGAGcaaatatataaattcattttgaa-----aaggGCCTAAGA-----------CTATGTGTCAA----------------CCCTCAAAGCAATGTTTATAGTCATTGTCTATATCTATGCAATTATTTTCATAGTGGCTGTTTACTTGAATATGTAAATTTACCCTATACTGTACATTAGTGACTTCTAATTCATTCTGTTACAAACTTCTTAAAACTCCCACTTCA--------------------------------------------TAAAAAGTTTTTTTGCGCTTGCTTAataaatataacag--ttataataaaattattctctCTTTTGTGCTAAAGACCACTCAAGAT-CAACATAAAC-TGAGT-TTGCAAATCATCTATAGTAAAACTAACTGACTGAGAAAAGCTACATAATCGAAAACAcgtgtttcaaaaaaa---aataggcaaaactcATGCTCAAAT--ATACTCATTTTATCAGGAAATGCTAACATAAATATTGGCTCTGGGGT-CGTGTGCAtacttactatgtaattcagagaAGAAGGTG---TAGGGAAGAGTTACAGGAAACTTCCTAGAGTGGAGTGTTAAGCTCAAAAG-GCAGACACTGAGAAGCAGAGTGCCATATGTGAAGAGAGTAGTTTGTCTCTGTGGCAACAGAAGAGCGTCTCTGAATTTTAAATCCCTGAGATCTAACGCT--TCCATATTCACTACAGCAAAATATTGCGAATGGTTGGCTTAGAAAAGCATAActctttgaaatataaataatttaaagaagatGGCATAGCTTATTTTAGGGAGATCAATATAAT----CAAGGAAACAGCAAAAATTATTAATAGATCAAAACGACACA-AAAATGTTGCCATAGAA-GAGATGAAAATTGTAAATGAATTTTGCGCTATTAATGTTGTGTTAGATGTCTGATTAATCAGACTACTA-ATGATGTAGTGTCGATTATAGGATTTATCTCACTGTTCATGAAATAACACAGGG----TTGTGATTTCCTCTAGAGTGTTTCCTTTGAACCCCGGAGAGCCTCTTTGAATGATAGTACTTAGAAATATACACACTGGGGTTTCTGGGCAGAACTCAGATGTGGATCTTAGTTTATGTCTTACAAGTAAAACACCTGA----GTGAACTTTCCCCAATTATTTCCAAAGCTAGGCGAAAACCAGCTGTTCTGCTTAGCTGACAATCATTTACATGATTATTGGGTGTTCTCTGGCAAAGTTTTCACAGTGGGAGActttttacagataagaaattCATCAGTGATAGACGAATAGATTGCAGACACAGTCTAGTTAAATGCTATTCTAGGGAAATTGCACATTTCATCTATTTAAACATTAGTGCTCTTTTTTGTAGAGTAGGTTCAAATCAGctttagaatataaaatattccaaGAAGTCATTTTGTTTAAG--ACTAGCTaggttaaaaataaacttttgtcaGCAGAAAAA-----CTGTTTAGCAAAGTGTATGTAATTCTCAGTAGGAGCAGAGCGAAGGAATCAAACTCCATCAATTGTATGATAAATAGCCCAGGCTGTAGCACACTGGAGCTGAGGTTGATCGTGGGAGAGAACACTCAGTACACCacatttttatccttt--attaTAGTCAGGGGATTGGTAGTTTGAAGTAAAGGCCACAGTCATTAggtttgaaaaaatatatattgtttttattttagtgtcaCTTTGATTCCAGCAGTGAATAAATTCCAAGAAATGTTCAATGTCCTGAATCTGTATGGTTAAGAGCAACCGAATCCTAGGGAGATCAGTTCAGTTCA----GCAGCTTG--GCTAATTGAAAAACATTGACACCTAGATTGACCTCCTTCCTTTTTTACCTCTGAGGCCACAAGTCTCATATCAGCAGA----AGCAACAGGACCAGCATTTGAGCAGATCAAACTGTGTACAAGCATAAGTGGTTTTTTGGTGAAGTGGAAGGATTATATCCAAGGACAAATAAATAGCAGATAGTATCTCATTAAAATGGTCAGTggtccctcaaaatac--tctctgaCATTTTTCCTTTATACTTGCATCAAAACGtcttctgattttaaataatttcaagacATAAATggcatataaatgtatatgtatgtttaGACCATACTTTAGATGAAATAGGAAagatattttgatttaattttgttactttagTAAATGTGCTTCATTTAAACTTTGAACTGTTTTCTAGATT

a score=17219
s chr3           150581380 725 + 160039680 AAACAAAATTCAAGGTGAGGAGAAGTCCCTATTATGTGTTAGAAT---TGAAAGCA-CAACACAACCAAATGATCTA-CAGAAACCTTCTTTAAATCTATGAGAAAATGGGTATTATAGTTTAGAAATATTCTGATGCAGTCAACATG-------AAATACTAATACCAGACATAATGATGTCATCTTCACCATTTTGTCTACACTTTG-TAATGTT-TTAGTTTTCT---GAGAAAATTGATTTAAATATGAACCACCACAGGAAATCCTAAAAATAAAGTTTCTTCATGGTGAAGTTAATCAACATAGTACACAAAAAATGTTCTGTAGGTAAATATGTATTAA-TATATGACTTAGCCATCAAAT---ACATAGGGTTCTAGCATGGATGGATCCTCTCTTTTAACTCAGGAATAGCACCCATAAGGAACAGGGACAGGCATATTAGAAGAGGTTAATGCCAATTATAAATTTACAGCTTATTACACACTGTTCAAACTAATACAAATACAGCATCATTTTAGCATTGGAACTGTGGCTAAAAGAATTAATCTGCTCGGCATGGAACCGGGTTTATTTAATCAATGTTGCTTCTACTAGAAAAGTGGATTAG-TTTCCTTCAAGACAGAGTTAAAAGTTTTGCAGCTAATTTATTTTAATAAGCATTCTTACTGATGGCTCAAA--------------AAAATGGGTGTGGGTGTTCTAAACAGTAATGAAGCACCAGGAAAGAAAGCATGACTTAAT
s HiC_scaffold_1 137178883 737 + 233722169 AACCAAAATTTCAAGCAAGAAGACCAACATTTTATCTTATGGAGTGACTGAAAGCAACTATATATGCAGATAACCCAACATATTGCTATtctaaaatgataagaaaaagaatataattgaATAGATAT----CAAAACAATCAACATGGACAACTAAAGACTAATGCAAAAAAAGAGGCTTCTATCAT-----TTTTGTCAAAAATCTAATAATGttactaattttcttttgagaaaggtGACTTAAAAATGATCTACAATAGTCA--CAGATacatgattcttctttatagtaaATTTC-TTGATATAACACATTAATTAGAGt---taattaaatgtaaattaaatgcaaaatttaaacatcaaATGTGATACACATTTCTTGCATTCGCAGCTACTCT------AATCAATGATGTTACTgacaagagatttaaa-aaatgaattcaaagagGTTAATGCCAATTATAAATTTATAGCTTATGATACACTGCTGACACCAATACAGGTACAGCAACATTTCAAGTTGGAAAGTGTGGCTAAAGAAGTTAACGCGCTCTGCATGGAACTAGCTTTTTTGAATCAATGTTCCTTCCACTCGAAAAGTGGATTAGCTTTACTTCAAGACAGAGTTAAAATTTTTGCAGCttagttattgt--tttttttttttattaaagagtaaaaggaaaaaaaagcagaaaaagggtacaagtaatataaaatttaaaaaaataaacagtaagaaatcactagttaat

a score=18526
s chr3           150589263 1008 + 160039680 ATAAGATTACAGCACTGA----ACAGATA---GAGAAAAATCTTAGTTGTTTCATACATGGATGGTATATGACATTTTTCAATCATCCCAAATCATACTGTAGGATGCGTTCTTTTATATATAAGATAGCAAAAGG--TTTAAATGAAAGTCGAAATGCTTGATTT-GCTGAATAACTGTATTAAAAGTTTTTCATTTTCTGCCCATTGAAAACATTA-ATTTTTCACCTTTCGATCAA--------GAAATATCCTTATATTCA--TTTTAAATATTCTGATGTCTATAGTTTGGATTTGACACACTCCTATGATTGGCTCTGTATTACTGAATTGATACCTTAA---------TAGTAAAAGATGAA----ATTCAATACTAAT----------AATGTTAATGTACTTTCCTTTGAATGACCCTATATTAAAGAACAC----------TTTGGAAAAAGTCTTTTTGTATAGTTGAAGACGAATCTTATGACATACTGTTTTATATGCATGCATATACATCTTTAATTTAAAACCACT-TCTCATAAAACTTCCTTACACAGCT---AAGTATTTTATTTCTCCTCATTGACTTCTTCCTGGGGATGATTGACAGGTGCAAGTTCTAGTGACACCTTCTTGCATTTCCCCAGGCAGAGCTTGAGGGACCTTCAGGTGCCTCTGGGAGACACAAAATAAGCTTGAGGATCCCCGAATCTCTCTACGTTTATTCACCCGGCTATCACTGCTCTGTCAGAATGTGAGCTTGCGAAAATGACCACGTCT-TATTTGACCTGGAATCTAATAACTTACTTAACTGAAGTCCTAGGAAAGATGGTTGCCAAAGAGAGGATGAGGTAGCCACGTGAATTCTGTGTAAGGAGG-CTTATGATTCTTTGCCTTCTTGCATGTTTACACTAATTCAGCAACAATATATGACACTcat-gctact------gtgtaaagcagtgcagtggggtctgtcttaggttgattcctgactcttgcgatttaacttttgtgaccttgagaacaaactttaatctttttacaagtctttgtttcttctt
s HiC_scaffold_1 137192291 1006 + 233722169 ATGAGATTGTAGCATTCATGTCACAAATAAGAGCAGGAGGCCATAGTTTCTTTAACAGTGAATGctgtataatatttttct-tcGTTCTTAATCATA----AGAATA-----TTTCATATCTGACTTaggaagagaaatttaaataattttataagggTTTTAGTTAGCTGCA-AATTACATTAAAATCCCTTCACTTTGTGTGAGTTGAATTCAtcatgtttctcatttttatttcaataatcaATGAACTAACCTAATATTCAAATCATAAGAA------------------------GAGGCATTCCTGCGACTAACTTTAAACTGTTTCATTTAAACTAAAAATTCATATATGGTAAAA--TGAACTCTATGCCATACCAATTCttaaaagtaaagataaaaaacCT------GAATGTTCCtagatttatgaaaatatttgaaatatttgaaaatattacatttttatgattCAGAACAAATCTTATGGTATGAGGTGT-GTGTGCGTG-AGATACAC--TTAATTTGAAAACACTATCTCATAAAACTGCTCTACATAGCTTCCATATTTTCAATTAGACCCTATTGACTACTTACTGGGCGTGATTGACAGGTACA-------GTAGCACCTTTCTACATCCCTGCAGGCAGAGCTGAAGGGAGCTTCACATGCCCGTGGGAGGCACAGCACGGG---GAATATCTCCAAATATCTCTACTCGTACTAGCACTGCTATTGCTGTTGTTTCCAAATttgaattttccaaaatgaaCACATATATCTTTGACCT-GAATCTATTGGCTTATTTCACTGAGGTTCTTGGGAGGTTGG-GGCCAGCTAGCCGAACATGTTGGCTGCAGATTCCAAAGCAAATAAACCTTCTTATTCTTTGCATCCTTAACTG-ATGCACTAACTCAACAGTATTTTATGAAACTTTTCTCTACTACCTGAGTGTAAATCA------TGGGCTCTGCCTCCAAACGATTTCTGACTTAgttgtttacagttctgtgaccTTGAAAAGTA---TTTAGCTTCACTTGGGTCTTAGTGTGTTCCT

a score=34679
s chr3           150606306 1787 + 160039680 CAATAAATAACAAAAAGCATAAAGTC------TCTTTTCCTTGCTGTTCATGT---------CCCTTTTATACTCAAAGTTACTTATGCCATT-TCCAGGGAGCAAAAAAAGCAATAACTGCATTCCCAATTTGTAAATTTAAACTACAGTTGTTGGGAAATTGCAGTTTCAGCTCTTATGGCTCCATACCCATTGAGTTTGAATTAAAATTTTAAAATATGCATT---TTTAAATGGACAGTTTTTAAATGAAAATAAATAATCTCTACTAGTGAAATGCATCAGATATATGCAAATTTGAATTATGTAATACATATTTCTCAGCAACATACTGATTAAGT-TTGACCAGTACATATGACACAGTTTTGTAATTTGTCGGTGTATG---CTGAGTTCCATGATTATAATTTCTTCACTTAAAAAAAA---GAAGAAACT-------ACAAAAATTTTTTTTGAA----ACAGAATACTAC-AATTCTTATCCCCAGTTGTGAAACCCA-AAAACAAATCAACCTTTGAAGTTCTTGTTTTCAGTGAAGATTTCTGAAACCCTC--------TGTTTAGGTGACACAATATGGCTG-AGACTTAGCATCTCTTCAAGAAAATGGTTCTTCTAGAATTAATC-AACATTCATATGAAGAATGAGATCAATGGACATGGTTT---TAAATTATCGTATCTTCATCTACCATTCTATCTCAGAATAGCAAAATCCCATTATCCTGTCATGGGAAGACTAATTGTAAGCTGATCTAATCCCAAATCCAGGACAGGAATTGCCTCGGCAACAAGACTTCTCATGCTTCCTTGCTATTTCAATGCACATACAAGCACCATCTCTAGATCTCATTCTGCGAGTCTATTTTTAAAATGTCGCTTTAGTTTAATTTCAAAGAGACCAATTAATTTATTTTAAAACTTCACATTAATGTACAGTCATCACTGAGAACCGC-GCTTCCTCCCCAATTATTTTCCTAGTAGAAGCACAAGGTTTCCCAATTTGGGGATCTTTTTTGGCCCTGTTAACAAATGTATATTATAATATGAGTTGGGTTCTCATAACTTTGATTTA-TGGAATCATATTAGCACGTTGTACTTCTTAGGAGATACTTCCCAGATTTTACTTCTTTTATATGCTCCTAA-AACTGTCGGTATTGAAGCA---GGTCTACTTAAAATAGTGTCACTC---TCAATAATAGCTAACATTGTTGATAGATTTCGTATGTGGCTGTCATTGATTTAATCCTAACTTAGAGGCTTTGTGTGCAATAAGTTTAACTCATTTC-TTAGTTCTAGAAGGTGGATGTGATTATCTGTCCCTCCAGTTTAAACGTAAGTGTATGGGAATATGGTGGATTTTAAAACATATCTTAAATTGCAGGGTTTACAGTCTGCTGAAAGT-GACTTTGACCAAAACATTAAGGTTTTC-ACAATTACCCACCACTTGTCAGAATATTCAGCTCAGATCAGTCAACTTAACCAAATTGTGCTGTATTTACAGATCATTTTAATAGTCATAAAAGACTATTATCCCTTTCCCAAGTTTTTCAACATGTTGGGAacgcacacacacacacacacacacacacacacacacacacacaTTCTCTAAGGTTTACTTGTCAT-----AGTCTAGACAAACATTGCTTACACATTGGTCCTGA-----CATTGTGATTACTTGTGAGATATGAAATCGTATCTCATGACCTTTAAGAAAGTTCAAAGACTTAGGTCTTGATAATTTTCAATTCTTTTCCCACACTAGAATTGTCATCGAAAGCCTTCATTTTACTCTGG----ATAAGACCCTGTCTTTCACAG-----TATACATGAACA
s HiC_scaffold_1 137207436 1740 + 233722169 CAATTATTGGTGAAAAGCAAGAGGACAGTGAGTTTTCTCCTTGCCCTGCGTGTTTTGTGCCACCTTTGCATAGT---GGCTCTCTAAGCCATTCTGCAGACAGCAGAGC--GCATTAAATGCATTCATGATTTGTAATTTAAAACTAGAGTTGT-GCGAAATTGCAGTTTAAGCTTGTATGGATCCATACCCATTGAGTTTGAATTAAGatttacaaatatgtattaaGTTTGATATGACAGTCattgaataaaaa-atacaatttgtgGCACTGCAATGCAGCGAAGATATGAACatgtaaaatatgtatgaaatattTCT---CAATATGCTGATTAGATCTTAGCCAATGCATATAGTACATTTCAGTAATCAATTGGGGTGTATTTCTGAATGCTGTGATTATAAAttcttaattcaaaaataaatgggAGAAACTTATTCCAAGAAAAGTTACTTCAGAAAAACACTGAGTCCTACAAAAACTCACTCATAgtcaaaatactaataaaataaatcaacttCTGAGTTCCTGATCTTAagtg----tttttttaatcttcaagTCTAAGATTCAAGCAACATATTTTTGCCATAGATCTATC-TGGCTTGAGACCAAACATGTTCCTGAAATTAttctaacatttttatattgaatGGGGTCAA-AGagataatttaagaaaattagtATGGCAGCACATATTTGTGAACCCAATAATGCTAGAATCACATTATTCTATCATATGAAGTTTAATTATAAA-TCATATAAAACCATATAGAGTTCATGAATTAACTCAACAGCATTGCTTCTTAC-CCTGGTTGCTACTCTACTAGACATACATGCTCAGACTT----TCTCCTCTAATaggccaatttttaaaata----------------------------------------tgacacaTCATCTTAATATAGATTCACAATTGAGGACCACTGTGCTCTCACAAAATATTGatcaaaatgaagcaaatgatTTCCCAGTTTTAAAATAGTTACGATTCTGGTTAACATCACCATATCAAGACACAATATGAATTTTTG-AACTTTCATTCATTAAAATCACAtcaacattttatatttc-------------------ttttacc-------tATACCTTGAATAAATGTAAGCTATGCAGCAAATGGGCTACTTAATTTAGCTTTCATCATGTTATTAATGGCCAATATTTATTACAGATTTGCTACGAAGTTGAAATTAATTTAACACTAACTTAGGTGGCTTCAACACaataagttttaattttctcatcaatTGCAGAAGGCACATGGTATTAT---TGCCTCCctttcaaatataaagaaattgaaatgggATAGAATTTTGAATATGCCTTAAATTACATGGCTCACA-CGTGCTGAAAGTGGGATTTGATCAAAGCATTTACATTCTCAACCACTGTACCCTCCTTGTCTCAGCACTCAACACAGATCAGCTGAGTTAACCAAACTGTAC-GTAGCTAC----CATTTTACTATTTGTGAAAG-CTATGACCCTTCTC---GGCATTTCAGCTTGCCATGAACTAGCCTGTA-----------ATATATACTTAAACCCTGTTTCTCACAAGAGTTTATGCACCATGAGAAAACCTAGACAAACCTGGCTTAAGCACTGACCTTCACTAACCAATACAATTgcttgtaaaatttaaaatcatattttgcGAACTTTAAGAGTAgttggagaat------------atttttgtgttctttcccAAGTTCAAGTTAT-----AAAGTCTTTATTTTGTCCTGGAcgtataatttcttctctttcaaaggTTTTTATATATGCACA

a score=85663
s chr3           150610021 4892 + 160039680 [encoded data, 5335 characters]
s HiC_scaffold_1 137211945 4822 + 233722169 [encoded data, 5335 characters]

a score=17220
s chr3           150614882 395 + 160039680 GGCTCATTAGGAAAAGCAGAGAAAGGTAAGAGACACAAAGCAATGTAATGGGGATTCCGAGTGAAAAGAAAAACAGCAACTGCTTTACAATTTTGAAAAGGGCTGGCTGTTTGCTTAATAATAACAAGCTGGAGAAAAGAAGATTTTCAACAAAAGTGCTTTATGTGGATAAAATCTACTGAGCTGAGTATACTTCAAATCCCCCCAGCACAG---ACTCTCAAAGAGAAAACATTTTAATGTTACCACTTCAAGTATATACAATGCCTTCTTTCACTCAGAAGCCAGACACAATTGTAATAATTTAGTTCT--GTAACCTGCTTCACTTCTTGTGCTATTTTGT-TGGGATAGCAAGGTGAGAGCTAGGCAGATTGGGTGGGAACAGGAAGCTGGTTTTG
s HiC_scaffold_1 137217311 393 + 233722169 GATTTATCAGAATAAACAAAGGAAGATAAACAATACCAGGAAATATAATGAggattgagagaaaaaaaaacaagaaaaa----tctacatttttgagaaaatatc-ctatttgtttaataaaaacaagc---aaaacaaaagattttcAACAAAAGTACTTCATGTGGATAAAATCTACTAAGCTAAGTGCACCTCAAATCCCCCCCCAACAGAAAAAACCCAAGGAGCACACATTTTAATACTAACTCTTCAAATGTACACTATTCTTTCCTTCATGTAAAAGCCAAGCATAATGGTAATAATTTACCTCCTATCAATCAGCTTCGCCCCTTGCATCATTATGCGTAGGACAGCAAggtgaaatccaggaaattaTGGTGGGAACAGGGAGCTGGTTTTG

a score=21368
s chr3           150625695 1206 + 160039680 TATTCTTGGATAAGAGGACTTAGGAGATTTCAAATATTTGGTAATGTTCTAGTTGACTTGAGTTGTGGTTTTGT-------------------TATATACTTTTCTATGAC----------------ACAAAGTTAGGTTAAATTCAACTTATACATTAAATGTAAACACATTTATGGTAAAAGTAATCAAATTACAATAATTACTCCATTATCAGAAAACTTTTGAGGCTGTAACTAATATATACACCCA--GGCCATATTTAATTT----CCTGATGTCTT-----ACCAGGGGATCTTACATA-------GAAATATTAAAACA------------GTTCATTGAGAACAAATTTTAAATA--AAAAAGACTGTAGAGCAATTGTGTATAAATAATAGTAAAATTCACATCTTTTCTACAAAGCAAAGCTAAAATATTTTAAGCATGTCGTAATGTTAGTCAGGAATAACGTCTTAAAGAAAACTATATTCAACTTATGTAATATGTGTTGTTCCTTTTCTCTTTGAAGAGTGTCCTTGGGCTCAAGCTACCCATAAACTGTTGAACATATGGGGTGAATTTTAGAGAAAAAAAATCCCTAGCACCTGGGCTGCAGTCACATTCGAAATGTCTTTTGCGAGTCCCCAGCTGGTAG--AATATCAGTTCTCAAGGAACATGTGATTATAAGTTGGAGTGTGTGTTTCTTGATCCAGACCACCCTGTCTCCCTTGCATCCATTTTCATCCCCTTCTTATGCCTCTGCAATGACACAAAAAATGATTTCATGCTAAATTATACACTACGC-CAAGTGCCTTTCTGTTTGAATTTTCTGCTTCGACTTACTGTATTAAGTATCAGATGTCTGAAGAGTATGTGACCTCATTGTTTC-TGTACGAAATGACACCAACTCTTTTATGTAAAATTTAATGAATGAAACCTGTTACTCCTTCAACATTTTATCTTCTGATAGATAGATACCTTCTCAAATCCATTGAATACTCAAAGTCTGAAAATTGGGAATTTTCTAAGAACTCTGTATAAATTCCATGAGCATAAATGACCTCATTGATATTTTGCTCATCTGCAATTAATTACAAAAAAGTAAAACAAACTGGTTATTTCTGTGGACTCAAAACAAATAAAAGA----------CTCCAA---------TGCAGTTTTGTTCTTAGGGTCCCCAGGGTTGGTAGTTTATATTTCAAATTATCTCTAAAGGTTTACTAAATTCTCATCACCTCTCCCTCCCCTCTCTGTAATTTTAAAAAAAAAAAGT
s HiC_scaffold_1 137225654 1256 + 233722169 TAGTATTGGACAGGAGTAATGAGATAATTTTAGTAAGTTAGCAATGCTTTAATTGACCTGAATGGTGGCTTCATATTAGtatctttgaaagtatatatatttatttattatttatttttatatatgtatatatttatgttaaatATTGCCTTTGATATATATAGAAA---GTTTATATTATAA-Taatcaaga-agaaaaagtaaattggaatcagaat-ttttaaagacaatagaGATTAAAGACTCTCACAGCCTATAGCTAATTTGAACCTTAATTGCTCTAATAATCAGCAGATTTTGTCTCTTGTTCTGCATTATGTGAATAAACTTATTCTTTGTTTATTGGGAATGCATTTTAAATGTGAAGAATACTGTAA--TATTTGTGCGTAAATAATCACACAATTCACATCTTTTCTAGAAAGCAGAATTcgagcatttaaaatatttttttctgttctacagAAATGGCCCACTTGAAAGAAGTATATTCAAGTTAGGAAACGCACActgtctcttccttccttcaGATGTGTCCTTGGGCATTAAGTACTTGTAAACTGTTGCACATATGGGGTGAATTTT-TAGAGAGAAAATCACTAGCACCTGGATTGCAGCAATATTCTCAGTGTCTTTTATAAGTTTCCAGCTGGCAGTCTACATCTGCTCATGGAGAATATATGCTCAAATATTCAagtgctttttcttt--tccagacTA-CCTATCTCC-------TAATTTCTAACCTCATTCTATGCTTCTTCCATGGCCCTACAATTGCGTTCGCTCCATCATGAATATGAAGCACTTGTGACTCACTGTTCTAATTTTCAATGT----TTACTGAGCCTTGTATCACATAGCTGCAGGTGATATGAGCATTCTGTTTCATATGGGGAGTGACATCAG-TGTTACATACCAaatt-----agagtttttttttttttttttaat-ttttatgatctTCATGGTAAATGTCTCCTAGAATCTAcc--attttcaaattttggaagCC-AAAGTATTCT--GAACTCTTTATAAATTTAAT--GCACAaataa--ttaatgcattttttaaaaacaggattcATGTTTATAAAGGTAAAACAAACTTTTGAATTCCTGGGAACcagaacatatgaaaaaaaaattaagtttctgAAACTAAAATTACATTTCTGATTATAGAATTCCTAGAGctgataatttgt-tttaatttttttttcattgttttcctaaaatcatacattttttctttttcttttcactcttttaaaacacaaaaagt

a score=27158
s chr3           150627490 725 + 160039680 TGCTGTTTAATCCGTGGAAATCATCTTCATCAGTTAACATACAAATTATCCAGTAATTGCAAATTTAATGCAGATTTGCTTCAGCAT--GTCATCACAGAGC--ACTCAATTTATTGTGCGA----AACATCCATAGACTCCTTGAGCAGGAGAAAAATCTGTCTTTCGTTTG--TTAAAAA---GAAGGAAAAGGAAAAGGCAAAATAATGCAACAAAACCGAATAGCACTCTTTC-TGTCTCTGCGTAAAGAAGGACCCTCTTGGCCCA--GGAGGTTCTTACCCTAAAGGTGTTTGC-AGGTGACACAAGAT---CCACTCTGGCAGCTTCCCCTGCCTACCTGGAAGGCTTCACAGCCACCTGCGGTTGCACCTGCTGAGAGATTT-ACATGTAGATTCCTTG-TGAATACAAAATCTAGGGCCCAGATTAGTAAAATGAGCCTAATCCTAAAAGCAATTTTCTAAGGTTGTTAAGGAGTTTCCCTAGATAGGAAAGGAATATACTGATACATTTTCTCTTGTAAGTTTTTTTTTTTTTCTGAACTAATGGATGCATAAACAATAAATAAATTGTGTATTGGGACTTAACTTTCTTCATTAACTGACATCACTGTAATAAAATTGCCTAGGCTGGAATTCACCATAGAGTTAATCTTTGGATAAATAGCCAGGCTAAGAGCAAAAGAAAAAAAGAAAAAGAAAGTAAGAAAGCAATTATCTctgaaatcatctctctctctct
s HiC_scaffold_1 137228397 726 + 233722169 taccTTTAACTTTATGGCAATGAATTTAATCACTAAACAAATAAACTCTCCAGGAATTACATATTTAATGTGAATCTGTTTCTGCATAAGTCATTAATAATTTGAATGAatatattctaaaacaaaaacattttgagaCTCTGCGAGGAAGA-AGAAATCTGCCATTCATtgaaaccaaaaatagaaaaagaaaaaaaaaaaaaaaaaaactccacagaaCTTAACAGCTTTTTTTTGTGTCTCTAAAGAAAAGAGAACTCTTTTACCCTAAAGCAATTCCGTCCATTAGAGGTATTTTCCAGATGACAGAGGATTCTCCACACTAGCAGAT-CCAGTGGCAATTTGGAAAGCTTCTCTGCCACCTGCAGCTGCACCTGCTGTGAGATTTTACTTGTGGGTTCCTTGGTGAGTATGAAATCTATTGCTGAGATTAGTAAAATGAGCCTAATACTAGAAGCAATTTTCTAACATAGTTAAGGAGCTTCCCTGGGTGGGAATGGACTGTACAGACAGGTTTTCTCCTGTAAA--------TTTATATGAACGGATGGAtgcataaacaataaataaactgTGTGTTGGGATATAATTTTCCTCATTAGCTAACATTATTACATGAAAATTGCCTAGGTGAGAATTCGCTGTGGAGTTGGTCCTTGGATAAGTAGCGtgctt-------aaagagaaaaagaagaaaa----aataaagcaattaccTCCGAAATTCTGCTTTTCTATTT

a score=22201
s chr3           150641947  995 + 160039680 TAATGTTGTGAATAATATGCCCATGGTGTGAAAAATAT-----CTTTGCAACTGGCCTACTCCCTGCCTCTCAGTCTGTGTGCTCTTTGGCTACCTTTGAACATTCTGAGAGACAACATTAAGAACAAAATATTGA-AGTGCTCCAACACACACATCCTTGCCTGGCTTGTCAAATTTTACATACTTACTTTACAATTTATCTCAGCTGGTATCCCTGACCTGACTCCAGGCTAA-ACATCCAAGAGCAGCATGCTGTTATATTGTAGCATACTCGCCTATAGAGATATTCTGATTGTTTCTTTGAAGAAGGGTATTATAGCCA-AAACAAGGTACCTGGTAAGTTTTAACCTTC-AAGTGCTGAGATACAATTTGTTTTTCTGAGTTTTGTTGTTTGGATAATTTGTTTTATTCTCTGTATAGATTTTTTTTTCTTTTCTTTCTCTCATGGTCTCCTGTAGGGCAAAGGCTTAGTTTACATAAGAC-AGAAGAGTTC-AGATATCAAGTGCT----ATTGCAAGCAACTGGGACAGGTTTCAAATATTCAAAGTGTTCACATCTGCTG----ATGAATAAATTATATAGTTATATATTAACCATCTAACACTAGACATTATACTACATCCTGTACAAATGACTCTCAAGGAGGACCTTCAACTGTCCAGAATACATTTTGGTGTTCCT--------TGGCAATATCCACTTAT------------------------GAGAAAC------CTGAGG-ATCAACAGAACACAAGGCTTACATTGGTCCTCTT--ATTTGATGAAAGTACCCTCTACTTGAGAT------CCTGAAAAATATGTTGATTTTTAAAAAAACTGTAATTAAACATTGCACAACAAGCAAATGTGTGGCACTCAGTGAATGGACATTGGGAGT-AAGATGTGGACTGGGAGACACT-----TATGATTTTAGAG--ACTGATACTGAAACTAAGCATT--------GAAAGATAAATAAGTTCCATCAAAAATAAGATTTTAAACAG--------GTTAGAGAAGAAATCTTGAAGAGCTAAAGATAAAAAAAACATAA
s HiC_scaffold_1 137247795 1062 + 233722169 TGATGATGAGAACAATGTGCCAGTGAAGTGAAGAATACATACGCTCTGCAATTTCTTCATAGCCTACTCCTGATCTTGCATGCTGTTTGCCTACCTTTGAACAATTTGAGGGACAAATCTAAGAACAAAAGATTTAGAATGCTCCAATAAGTGAATCCTTGCCTGGCTTGTCAAATTGTACATACTTACTTTACAATTTATCACAGCTGGTTATCCTGACCTGACTCCAGGCTAAGAGATTCGAGAGCAGCGTGTTCCTATACCTTAGCATACTCGCCTATGGAGATATTTTGATAGCTTCTTTGGAAAACTGTCTCATGCTCAGAGACAAAATAAGTAGGAGGTTttaacctcctaagtgctgaaatacaatgttttgctttgctttttaaaattttgatcactggttttgtttcatttatggcTTCATGTTTTGCTCAGTTAGATTCTGAACTCCTATTGTGTGCAGGCTCAATTTGTGCTTGTCTAGCAGAGTGCAAGCTATCAAGAGTTAGTGACTGTATGCAACCATGAAATGTTGAAAACAT---GAGAGGCAAGATTTGCTGATTTATGGGTAAATTCTTCAGTTGTGTATTATCCACCCTATGCTTAGTATCTTGTATTAATCTAGAGAGGCAATGTGATACCTGGCCCTCCAATCCTTGGGAAttgctttttatgtttctctAGTCTGtgggaatttctttttctttctctaccaATAGTTATATGTGCAAGAAACTGGGAACTGAGGTTTTAGTGGAATATAAGCCAGATACTATTGCTCCTACACTTGTGAAGCTTATATTCTAAATGAAATGATAGCACTAACAAat-tatagaatttt-----aattttaattgcacACTG-----------GCTGTACAGGACATAATGTATGGGAACCAGAAGCAAAGAATTAACCTggaggactctgtagccagggtTTCTGAGGAACTGATCTTTCACTTcagttttaaatatcaaaatgatacataggtt--gtaaaaaaaaaatatccagacAGAAGGGATAGTAAGTGCAAATACTCtgca-aatgaaagaaattaaaaacacaa

a score=41263
s chr3           150647097 1914 + 160039680 AAGATCATGTGTAATATAATAGCTAAAAAT-TAATGTAACAAACTAATGTGAAGATATTAATGGCAATTAAAACTC--GACCTGGAAAAGGAG--AAAGCATCCT-GTGATCTGGGTCTCTGGA-AGATATAT-GAAACAAAAGTCAATAGACTACCTTTACCACTATTAGTTGGGTTTTAGAAAACACTATACACTTTATATCCCACTTTGTTGTTGAGGTGTCTTTCtgtttgtttgtttgtttgtttgttGTTAACAACAGTAAATGTATCCTAAATGATTGAACAT------GGTTGGGTTCTTCAACA---------ACTTGGTCCTTTTTGTATTATATTTTACATGAGAATGAAGGATTCTCTTCACCACCCTCATCTCCTAAATTTATCTTTTCATCAGTTAGCAGG--AAAGGAGGTTGCATGACACCAAGAAAGGAAAAGGACCAAAAATGTGAGATGAATTAATAAATCCTTTTATAGAAATGTGTAGAACATCTCTGCATAAA-GAAGCATGCTTCATTTTTTTTTTAATGAAATGTGTCGTTTATTCTAT---TCAGAAACAATGTCATAATGCTGACTCTGACTTTAACTA--------------------------TCCTATTTTTCTCTGGAATGCATCTTCCAAAGTGTCAGCATTTGG------------ATAAATG------CTATAATGGCACTGTTTTATAACAGGTAATGTTTCTCTTTCTAGAGAGAATGGCATGACGCTGA-TCTGTTGCTTTGGGATCACCTTAGGGGAATAAATTCTTCAAAGGAATCTCTTGGCTCTGGAAACCTGTACTCTTCTCTCCATGTGTTTGCATGCCTTGGAATAATCTCTTCCCCAAACTGGCTGCATCCAGGAACTTGCTGTGCCTCTGATAATCACTCACCTTTCTGCCGTTCAACTTCAGAAGAGAAAAACCACTGT-GAAAAATACCTCCAGTTGGTTGGCATAAGCAATAAAGGGCCATTTGCCACACGGCAGCCACTCCCTAACTGCAAACTTTCAGCTGGCTTATATAAAGCTTATCATAAAAAGACAAAATGAATACTTTATGTGCATAATGCATTCTTTTCCTAAAAATAGTACCTGAGGCCAGTAAACTTTTCCAGGTTGTTGCTGGCTCTGCCCAGTGTGTCACTAGTGTAGGTTGGCCT-GCAAGATTCCGGTTGGCACTACCATAGGGTAGGACAGCTGTTCCCATTTCTTCCCCTGAAGGGGTCCCATGCTTTTCCTGGCAAAGAATTGAAACTTGGCTGACAGAAACCATTTCCAAATCACCAAACATAAAAGCACAAAACAAACAGAAACAAACAAGACAACAGAAATCCGGTCAAATAACTAAAGAATTATATCAAAATCAAAGTTAGTGCAG--AAAGAAACTTGGCATTGCACAATGGAAGCATATATTTTAAATGAAAGGG---TTTTTTAATAGAAAACTT--------TAATGATGAATT-------AGCAAACAATCTTGACATGTTTCACACTTGATTATTCTATTCATCCAGCTGTCACTTCTGAAGATATCTAAGAATGCGCTTACGATTCTTAGCCCTTGGGATTAATAAGGGAAAGATTTGCAATTAACTCAGTC-TTTCACTTTT---TCAGTATTCACCTCATGTGTACAATATGCCAGAACTTAGATTAGTTCAAAGTCCTTACAACTGGAAAAGAACATCTA-TTGACCTCACAGCCTTGGGTAATTAACTAACACAGGCCGATCAATGGATGGGTATATCAGGTCCTACATGTATACCTTTACATAAGAAGTCAAA---AATTCATATTGACCAAAGTTATTAATCTGCAATTGTAGATTATATTTTCGGAATGT-AAGCCAAAC--CCTTGTAATATATAAAGTGATATTTGCAATCTTTACTGAATTTAGTATTTAAACATAAATAATTCTTTTATTTGGATCCTCAGCTGAAGAAGATAGAATAAAGTTATTCAATACAA
s HiC_scaffold_1 137259478 1883 + 233722169 AAGGTCATGTGCGATGTAATAACTAGCAGTCTAAAATTATGTGCTAATGTTGAAGTGTAAATTGTAATTAAATCTCTTGATTTAGAAAAGGAGTCCCAGCACCCTAGTGACTGAAGTCTCTTGACAggtaaatagaaaatgaaaataaccgACCAC----------AGCAGCTATGCTTTAGAAAGCACTGTGCCATGCATAGTCCAGTTTCCTGTTGA--TGTCTAT--------------GACCCCGAGTTCTCAAC---------------CTAAATGCTTGAGCACACATAAGGTTTGACCCTTGAGCACCTCTGAATATTTCAGGCTTCCCATGTAAAATTGCACTTGGAGACAAATCGTTTTCT-CAGAACCCTTACCTTTTAGGGTTGCCTCCTCATCCGTGAATGGCGCAGAGATGGTCACTTGGAGctaggaaaggagaggaaagagaaagcttA-ATGAATCGGCAACTGCTTTTTAAGACAAGGGTAGAAAAACTCTGTGTAAATgatgcattctt---tttttattttatgaattttgtcCTTAACTATATAATTCAGAAAGAAAGTTCTGATGATAGCTCCAGCTCAAGCTAATGTTCTGTAtataactggaaaaatattttatttctcactgGAA--------CCAAAGTCTTTACATTTAGCCATCCTTTTGAATAAATGGttgttatataata----tattatagaAAAGGCCATATTATACTGtccaaagagaatcacaggcagctGAATATATTGCTTTGGGATCATTTTAGGGTA-TCAACTCTTCAAAGGTATCTGCTTGCTTTGGAAATCCTTTTTCCTCTCTACATGCATTCACATGACTTACAATAAAACCTTCACCAAGCTGGATGCGTCCAGGAACTTGCTGTGCTTCTAATAATTTCTCACCTTGCTGCTGTTCAGCTTCAGAAGA-AAAAACTGCAGTGGAAAAATAGCTCTAGTAGTCTGGCATGGAGAAGAAAGCA-CATTTTTCAGACACCAGTCTCTCGCTCAATGTAAAGTTTCAGTTGACTTCTATGGCACTTAGCATTA------AAAATGAAGACTTTA--TGCATAAtacattttgttcaaaatattaataaatgacaCATAATAACtttctgagttttgttcataagCTGCCCAGAGCATCACTAGCTTGAACTGGCCTAAAAAGACTGAAGTTGGCAACAAAACTGGGCAGGACAGCTGTTCCCATTTCTTCCCCTGAAGGGGTCCCATGCCTTTCCTGGCAAAGAATAGGAAGTTggctggcaaaag------------------------------aaaaaaaagaaaaatccac----ttACATGAAGCCA---AAATAACCACAGAATtatgtcaaaaacaaaatcaattcaGCACAGAAAAACTGGCactgtaaaatgaaataatatattttagattAAATTGATAGTTTGTACTATAAATCTTCAAActaataatgataatatataatGCATCATGCAATGTTGACACGTTTCACACTTCATTATGCTAGTCTGCCAACAGTCAATGATGAAGATGCTGAGAAGTATG-TGACTTTTCTCATCTCACTGTATT-TTTATGGATTGATATGAAAGTAgcaaaattatttcacatttcagTAACTATTGACGTAATCTTTACTTCACACAACTTCATTGATAAGAGTGAAGAATTTAAA---GGTAAAAAGTAAATACTTGACCTAAAAGTTTCTTTCAGTTAATTACCAGAGGATATTTTAT-----AATACAGTGCCTCCTACTTACTTAGTTTT-CTTGAGAATTCAAATTGCCTACCTACCGGCCAACGTGATTTGCTTAAAATGGAAGACAAGACACT--GAACATAAAGACAAATTATTTTGCAGTGGGTAAA-TAATACT----------------TTAAGCATTTAtcatcaaataattttatta--tagaaCATTTACTGAACAAGAACGAATGGAGTAACACAATAGAA

a score=19670
s chr3           150650064 2889 + 160039680 AGCATTTTATTTTAATTGTAGTATTTATGTCCTTTAAAAAATGT-TATTTTTGATAATGTGTGTGAAAACAGTTGTTCAAGTATATAGGAAAGTATAT-----TAAATTATTAACAT-----AAAAAGAGCTCTGTTCTTTTGCATTTCTGAGTTGCTTACATACTTCATCATAGAGCTTATTTGG-----TTTTCTGTTTAGACAAGCTT-TCATTGTTAATTAGTAGAAGAAATG--------TGCTTATAGAGAGAATGTACAGTCTCCCTTGTACAATGCAATTTTGACTCTCATGTGTCTGGCAGACTGTGCAAGCATGTGTGCCAAACACATGCACTCTTTAGTGCTGACAACTCATTAATATGATTATTTTGTCAAGCATCTTGACTGGCAAGTCAAATATTGCATCCACGCTCTTG--AGTTGTAAGAAAACAACAGTACAGGGAGGGACCTCTACTTTGGCTCTAATTAAGTAGGA----ATATTATTCAATGATTTTCAAGGTAGTGCATGCTTTACTGGTTCAATAGCACAAATGTGTGAATGAAGATAGATTTATGTGCAAACATGTATATTTATTCAGATTAAAAGATATTATTTTAATCAAATGGTACAAAACTAGAGTCTACATACTTtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCGCGCATGTACATATAAAGATATCTACTTGTGGTAAAAGAAGAGATCATTGACAGCATGGAGTATATTTCTCTATCCCTCAGcaccgtaattttggagaaagtgtgtcgagctgaagcttcagatcaccatttctactagacagtaaatccctcggatcagcccgtctctgcctttctgttattgtaattatacacatgcaatggaaacagcttttccttgtgtgatgagtgtctgaactccaatcctcagacttgtccctcagcccagtacccacaccatcgccccagcccTAAGAGTATTTGTAAGTAATCACGGTTATGTTATAGTTCAGGTGGAAAGTATCAGTGTACTTTCAGTG-AAGGTAAATGAAGAACTAGCTTTGATCCATGACTTAAAAATGGATCATTTGGAAAGATAGAATTATGCACCATGTATGGAAGAGCCACTCTGAGGAAAGCTATGCTCGTTTATGATCAATATTGGTGCATTTA-----GCATATTCCCTTTGTACTTATTAACTATAAGAAAATATGTCACATTTGAGAAGTATCTGGATTGGATATAAAATTGACTAGTGAATTAAAATTAGTGGTACAAGTTGCACTGATAAATCTCACATATAGTCACATTTAATTGTAGAATTTCAGCTTAAGTCAGAGTAAAACAAAATGGAACTCAAATATTTGTTgatggattttttttttgttattttacaaaaggaaaatcaaggaggctgagagtaaattatttggc-aatattacctaacaaatcatggcaggaattctagctgaatgctatttgcccactgtcttctttccactTGTCTTTCCACTTAACTATCAAATTATTAGTTATAAATTATTACACATT--TAAGCTAGTTTGCCTAAAAACATGAATATGTACAACACAATACAAACAGTCATGTTTAATTTTCTTCTATTA--------ATAACATGTGTATTTAATAGCTTTAGATTTCTTTGAACATTAATTATATTCAAGCTAGAGGAAACATGGTTTTGGGGGTTTGTACAAATGC--TTGAAGATAAATTGTGGAGTTTCTTAAGGCCTGTTTCACAAGTGTGTCAAACGTGCCTGCAGCATGATGTTTCTGAGAAACCAACTCCTGTGCATTTAAAGCAAATATGCTGATCAGATGTTTCTAGAAAATAGAGG--------CAACTGATGCTTC---AGAACCTAGAAATCATGCTATTCAACTTCATTTGCCAGTGAAGAAACCTGACCCTTGACATTTATCTTCTCTTCATATACCTAGCGTCAATTAGGATCCCCTTTTGTTTAAAATTAAAACTCTCTTTACTAACCCTATTTAATAA---AATCACATTCATTTTGTAACAAAAACCATTTTCCTAAGTTCCTATGTCTCCACCTTGGAATGTGGACAGAAGGAAACTGAGACCTAAAATAATCATAAG---CATGCATCACCAATGACTAGTGTTTTATGTGGCCTATATTATGTGATTAATAACA-GTAAT-TGCTGTATCGGAGCATGGCAGTGAGACATGGTGGTCATG---ACTGTCAGGGACTAATCTAGCCGTTGTCTTCTCCAAGTGCCCTTTAATTTTTCT-----CTCTCTGAAAACACTTCACAGTCACATTGAAGAGCTATCAAAGGTTATTTTCATTTAGCAGTACTGTGGCCTAACTCTTAACACACTTATTATTAATCTCCATATATTAAATGCACATGAAATAAAAATT-ACAAAAGCAATATGATGAAATCATGATCTCT-----------ATCTCAAGCAC--------AGAAACTTGAAGGAGCTTATTTACAATCACCCAGAACGAAGAT-GCTGAGCTAAGTATGAA--AGAAGCTGAAATTGTTATGTCTCATTATTAGTT----------AGTTTCCCAG--AGGCATTGT-------CTCAGAAGCTTCTCTGGAGTCACACGTGCAGTCTCATGATGCACTGAAGGAGCACAGAGCCTGCACAG-TAAGGACAAGAAAAACCTTTGTCCCATTTGCTTGTTAGTGGTCACTTTAGAGTTTGTTTGTTTTCAAAAACAGAACATACATAACACTCTTTGGAAGAATCAATCAACGTTACTTTTTTTTTTTTTGTAAAAGTGCTGAGCATAATGTTAAGCAAATAATAGTTGTTCCATTAGTAATTATTTATGTTAATAAAAA----------TGTATA-----CATTTGTTCCAAATGGCTGGACTTACAAATGGTTTAG-----AAGATATTGAAGTGAGAAAGATCATTTAAAAAAAGAACATAAGGAAATCAATTACATTCAACAT
s HiC_scaffold_1 137263613 2556 + 233722169 AACAGTTGAATAAAATTGTAATATTCCTGCC--TGAGCATATGTatattaatgatgaaagatata-------TTCCCCATGTAGGTAGAAAGATGTATACGTTtacctttttaagatttttgaacaaga----ttttatttaatgttccAGAAAA----ATGTTCTTGGTCATATTGCTTTTTTACATAACTTTCACATTTAGGCAAGTTTATCCTTGGTAATTACTACTAAAAAGGCCAAGATTTGTTTATAGC-AGTATGTATGTTATTGCTCATAGGATACAACTTTGACTGTAAACAGTCTAGCAAATTCTACAGAGAATTGTGCCAGGAACATTCTTCGCACAGTGCCTGAGACTCATTAATGTGATTATTTTGTCAAACATCTTGACTGACAAATTACATATTACCATTATACACGTGCAAGTACTAAGAACACAACAGTGAGTCGAGAAA--TTTTCTTCAGCCCTAATTAAACAGAACattatcttatt--attattttcagagtTCTACATGCTTTTCAGGTTCAATAAAGCAAATGTGTAATTGAAAATA-----------------GCACACTCACTC----------------------TCAAA-----------------------GCTT-----------------------------------TGAGTGTGC----------------AGACAATTATTT-----------------------------------------------CCTCAGGA-----------------------------------------------------TATACAA-AAATCTCTTTAGTCA---------------------------------------------CAACACATTTTGTTTA-ACCATGAGTGCAAGGATCTAAACCTATAGTCTTA------------------------------------TAAA---------AACCAATCACTGGTCTGCTGAACTGTAGATAGGAGATAACAACACGATTTCaatgaaaggagaaggaagatatAGGTTTGATCTGCGATCT-AAAATGTCTCATC---AAGGGCACCATAATATACC-------GAAGGAC--ATTTGAGGAATGATAAAAGT-TTTGTAATCAGTATGGTTAAATGTAACATCACATAGTTCTTCTATTCT-------TTTAAGaatgattataaaatataatcagtttcttttctaaattttccacttaata--aaaatagaatgagTAGTGTAAATTGCATTTTGGGATACAGCAaatgcatatatatgaatatgaaatACCAACTGAAT---GAATAAAGTAGAGTGGGCCTCAGAGATTTGTaca---------tttgtatcattttatagCTGAAAAATGGAGGAGAAGGCAATTCCATGACTCTACTGGTAGCACAAAACACACCATTGTGTGCATTGTGGCTGGATATTGTTT-CTCTCTACCCTTCATTGCCATTCCTCTCTGTTTTAGTAACAAATTAAAAGTTACAAATTAGTATGAAATACTAAG-TATTGTATttcaacacac-----------acacattagACAAAGACAAATTTAATTGCATTATATTATCAGTGCCAGGAGATGT---TTTAAGAGGTATAGATTTCCACAGACTTCCACTCCATTCAGTTGGCATGAAACTTAGTTTATATCTCTTGTGCAGGCACAGTTCAAGAGAAACCATCTAGCCATTTCTAGCCCCATGCCTGGCCATTCCAAGCACATGTCTAGCTTCTGAATTCTAGAATCCTAACTACTA------------------GTTGATCCAATGTGACTAGGAATGAGACGGTTGGATTTAGTTGGACCTTCTAAATAACCT--Aattcat--tattctttttgttctgtGGAAGAAAAGTACTG--CTTCAACATCTTTC-TCTCTTCATGTAGTTGACA--GAGTTGACTTCTTTTGGgttgaaaagtaaaatttcctTAACTAATTCCA-TTAATAAGCTAGTCGGATATGTTTTGGCTctgaaaatattct------ttcct-tttttctatctttGAGAATAGACAGAAACATTTTATGTTTTGGAATAATTCTAAGGAAAATGCTAAAAGAAT--TCAGTG-GGCATATGAGCCATATTATGAGATTAATAGCATGGAGTGTGCCACATTGGAGTAT----------TATGATAGCTCTGTATATCACCAGGCACTAGTTTAAGCACTTCACCTTGTTAgtattatttaatcttcacaagaAACTTGTGAaattctttcacaatcatatggaAGATCTATCAAAgct--tttttatttactatttattagATTGAGTGTGTACTATACTTCATA-AGATCTCTTCATATTAAATGTAC---AAATATTAACTAATCAGAACACTATGAGTTGAACACTATCTCTATTATTGAGAAATTTAAAGTACTATTATTGAGAAAGCTTAAGTGTTTTGTCTGAGATTACCTAGTAAGCAAATCACAAATCCAAGTTTGAATCCAAGATTCAAATTGT--------AGCATTAGTTACACACCAACATGTTCTTAGTAAAACATTGTGGAAATGCCCAGAGATCCTT----AGTCTGTGGTACAGTTACA--ACACAGAGGAAGAACATAAAACTTGCAGTGCTAAAGGCGGTAAA----CCTGTCTGGTTACACTTTAACTGAGTCATCTaggatcatttatttttcctagttCTAACAAGgaggtaatttt-------aattaatgaa---------tttcGTTTCTATATACAAGCCCAGCACAATGCTAAACACAT-ATAGTTGCTTTGATAATGA----TTAtgttaataaataatattatgcttgtataaaatgaaattaaactaagTGGATGGACCTAGTAATCATTTAGACAAAAAGATATTTAAGTAAGACAGATCATAAATAAGATATAGTTGATGAA--TGATTACATCAAAAAT

a score=15180
s chr3           150653347 370 + 160039680 GGATCAATTTACTGCTGAGCTGTACCTGTGACT-CTGTAATTAATTTCTTTCTCCAAGTGCAAGGCCAAAAAGAGATTTTTA-GTCTCTCAG-GGAGAAAACAGAAGGAGTTACCTTCTCTGTC-ACTGGGCTCTTTCTCTCCATTTATATATTATTTCACTTCATAGAACTAGAAAGGAATAAATGAGCAAAATGAATTTGAAATTGCTAGTTACATTTTCCTTTCACTTAACCTTCACAGAGTTCCCCAGAACCAATTAATTAACCCAGTTTGTGATTGATGTCCTCATGCTGAGTGCTCACCTAAGTCCATTTTGAAGCAGTATTTCTCTCACCAGTGGACAAGGCTGTTCCTGGCCTACATCTTAGGAAT
s HiC_scaffold_1 137268832 371 + 233722169 GGGGCAACTGACTCCCAAGCAGTGCTTGCAACTtcttaaagaaatttatttctttaaatgtcatACGGAAGTGATGTTTTCATGGGTAACAGTGGATAAAACAGAAGAGAGGACCTCCCTTTTCCAGTGGCCTGCATTTCTCCATCTTTACATTATTTCAGTTCcgagaactagaaaaaaataaatgagcaaa-tgaattCAAAATTGCTAGTTGCATTTTCCTTACAGTTAACCTTTACAAAGTTCCATAGAACCAGTTAATTAAGTCAATTTGTGATTGAAATTATCATGCTGTGTTTCcatctaagtactttttaattca-catttctctcACTAGTGGGCCAAGTTGTTTTT-TCCTACAACTTTGAAAT

a score=31185
s chr3           150657991 2700 + 160039680 AGCATTGGAGATCTACCCAGGTAGAGAATGAGAGAGATGGTTAAATTGGCTTTTATATGAATTGGGAATGACTACTAATCATTTGTTTGGGAAGGAGATG---TAAAACACCTGTGAGGTTTACTTAACTTTATCCACAGCTGTGCAACTGATA-TAATCCAAAATTGGTGCAAAAACATGCAAAGTGATTTTATTTAACTTAGATAATTGAAAAACTGCATTCTATATTTGACTCAGTGTAGTGCACCTAAGACAATCCGATAAGGAAAGGTCCGCAGGTACATTTTCATGGCATGAAATCTTCCAAGAGAATCATTAGCTTG------TAGTACAACAGTAAGTTATTTCCTCAATAGGCTTTTACTATAG----CAGCTAGAAAA---CAGCAAGGCAGATTCAACAG-GCAGTGG-----GTACCTGCTGAAAGTGTACATTGAATTCAGGCTATAACTTCACAGTTAT--GTGAAGCAAAAGTGGGTGGATGCAGAAGAAGATAGAGATGATTACACAAATATGGCTTGACTTTTTAACAAACTGCT--TTAACATCTTACAGAAAAAAATAAGAGAAAAAGAAGATAATTTCAAAACCACAAAGAgggcaggtgaaaatactcagtgagtaatgagcctgaagcacaaacatagatatttgaatatggatccttagaaattccatagtgctggactaggcagtgtgcatgtacaaa-gccaatttacctatgacaagaggggagatggagacaggcaaatcctcagaaatgtatgcccagctagcctgttgtgtacagagtggcaatcaagagactctgtggcaaagaaGGCATATTGTAATTACTGTTATTTGATGTCCTCTGACATCCAAAGGGAATGTTGCACATGAATGTTGCATTcatacacacacacacacacacacacacacacacagagagagagagagagagggagagagagagagagagagagTAATAAACCAGTCTTATTTAGTTGACCCATGTAAGATTGTAAAGCAATAATTACAAAGTTCATATTACTGTCAAGGACTCACAGACGTTTACCAATATAGATTTATTTGCTAGAGCTCAAAAACTAAAATTAACATATCATGACAATACCATAGTAACAGTTTCTCATTTTCATAATATGATCTGTTAGATGTTCATGAATT-ACACAACTGAAATTATGATTGTCTATGTATGTCTTGTACTGCAGAACACTATACACACAAAC-TAAATAACTATACAATGGAAGTCTGAAGCTTACCTTCATG-TTATGGTAGACCCTGAAGTCTCTTCATCTTTTT-CCCACTTTCCCACACTTTTGGAGAGAGGATATTATGGTAAATGATGTAAGCTACGTCCTTAATAGTATAATTAAAATTGGGTTGATGTATTATTTTAGTTTTTGATGCACAATGTTGATCTGA--AACTTCACTGTAGGGTGGTAGCTTG-CTGCACTGGTTGTACCAAAC-AGCCCCAGTTTTAGACATTCCAGCCAGGTTGTATTATGCCTGTGAGTTGTTTTATTTATTTTTTTCAACTAAGTGTG--------GTG---------GAAGTGAT----------CTCTGTTTTTGCATGTTTAAGAATTCTGA--CAGCCAAGGTGTCAGCTATCAGGGAAGAGGAGGGAATCCGA--TAAAGAAAGCCC-CAAAAGAGT---GCACAGGAATAAGGAGGAGCTCAAAAGGACAAGCAAAGAGGAATCAAAATGAATTGTCCCCAGGTATGTATCAAGACAGACTTTAGATAACACACTTCCTGAATATACCCA------------CATACCAACATGAAGATTTTCAGCAAATAGCCACACATTGACTCTAACATACAGCATAGGATTGTGAACAAATGAAACACTCGATCATTTGAACCACTAAGTTTGGGGGTAGACAACTGTGCAAGAAGCTATGCTGGGAGAGATATATAAAATACTGCATCATTAACTTAGCTTGGAGTTTGATGTTAAGTATTGTAATTAGGCCAAGTGGAAATGGAGTGGGCTCTGAGGTTGCCACAC-AGTGACTTTTATGTTCACCTCAAGTCAGAGTGATGAAGCATATAATGGATTTCAAGACTTTTAAAATCTACCCTGCATTTCTATCAAAAGAACTCTTTTTATCTTAATTGGGGTTGAGCAAGTATTATGTTTGTAAAATAGCCACAGGGAGCCCTTCTGACCTAGCTTTTGTATAGAAAAATCAGAGTGTGAATCTTAATTTCATAGGCATTGAAGAACTTGTCTTGCTTGTGTGTTTGAATCCAGAGGTGAGCATATATAAAATCTTTTCATAAATCCTTATTATGATAGTTTAAAATGAAAGTAAAACAATGTGCATTTCGTGAAGGGGAATGGCTCCTTCAACTGGTTAGATAAGACAACAGAGGAAAGTGATAAATCA-------CACAAATAGTAAGTAGTAGAGAGTTTCAATATAAAAT--AGAATGCTAAGTTAAATTCAAATTTTCAATGAATA----------------TCCATCCCCTGAATGGTA-------------TACAACTCAAACTT------------AACTAGAATTGGACATATCTAGAAATTGTT-------------TAGCAGGAATAAATCCAACAAACCTGTGTTAACTCAGAAAGAGGAAATACTTTGAGAGCAGTGGGGGGGGGGGGATAGTAATAGTGAAGAAGTTGATCTACAGGT---GAAAGATGAGGCAAGTCTGACAAAAGTAGGGAG-TATGGAG-TCATTGGTTTAGAAGGAGGAAATTGTACAC-----AGCAGGGAATGGAGTTTCACAGA
s HiC_scaffold_1 137270591 2425 + 233722169 AGAATTGGTCTTCTGCTCATGTAGGGAACCC-AGGGATGTTTAAACTGGCTTTTAAACAATCTAGAATTGGGTGCCATGAACTTGTTTGAAGAATAGATGGCACAGTACACCTGTGATCAGTGCTTAAGTGTAGCCACAGCTGTACAACTGAAAATCATCCAAAATGG----AAGAGCGAGAGA------TTTGTTTAGTTTTGCGACTTCAGATGCTTTATTGTGCATTTTTTATCTTACAGTATACATGAGCTGAAC------AGAAAGACCCACAGTTACAATTTTGTAGCATAAAATGCTCCAGGTGAGTATTATGTTTGGTATACTAACACAAAATTGCTTTATTGCCCACAT-TTTATTCACTGTAGTTATCACCTAGAGAAAGGTAGCATAAAAGATTCAGCAAAGAAGTGATTAAAGCACCTCCAAACCGTGTGCCTTTATTTAATAACACAACTtcaaaattcacagtgaa----aagtCAATGGGAGGAAAAGGTTATAGAGGCAAATACACAAACATATTTGGACATTTTAATACACT-CTAGTAAATAGCTTATAATGAATTATAAGCATATC----TATGTTTTGAAAACTA------------------ATGTTAACCAAGTCA---ACCTGATTGACCTATAAAGAAATCTACAG--------TCAGTAATT-----GTGC--AACCATGTTCATTACATGTTCTCATGTCTATTTTCCTA-------------------AATAGACAAAT------------ATTTTCAGCC---------------------CAAACAAGCAAC------------------------AGTTA----TCTATGGTGTT-----------------AATAT--CACAATAGCATTTAATTTA-----------------------------------------GGAGAGATGAATGCAGAGAGGCACAAAAAGT------------------------CCC---------TGTGGTGccataaatat----ttcacatt-----------------------------------ttcatttg-------------------attagtGTGT-------GTACCA-------AGATCCACATGCATAGAAT----------------TCATGAATTCAGGCAACTAGCATT---------TGTGTG-GACTTATATCACAAtaaaataagtagataaatatACTTATCTGAACAGCAGGAATTTATAGTTTAATCACATGCTTATTCATGATGCTgaactttcttcatttctttgcttgtgtttagatatttagagaaaaagaat-----gataaatgacataaa-tatttcattaatagtTAGATCAACACTTGGTTAAGCTA--ATCTATATCTCTG------------GATCTTATTACCAGAACTATATG-----AGATTGTCAACACTGATTTCTCCGAGTGAACTATACCGGTAGATCTTCCCTTTTACTCTCAGGAGGCTTGTGG--------ACTCACCTTTTCCAACTAAATGTGTGCTAATGGTGCTGGCCAAAGCAGTGGTTTGGGTCTGCCTCCAGTCCTGTGTGCTTAAGAACTCTGAGTAAGCAGGAATGTCAGC------GGCTCTGCTGGGAATACCACCTAAAGCCAGCGCGTAAAGGCGTCAGGTACAGGGA----GAGAATTTTCAAAAGACATGTGGAAAGAGAACCATA------GCACCCAGGTGCAAACACGGCCAGACTCTAGGCATTCTCCTATGTGAATAAACCCATCCCTTAGACCACCCGCCAGC-TGAGGAGCATCACCATAGA-CCAC---TCGGCTGTGAT------TATAGGGCTGTGAG-AAATAAAGCATCTGGTC-TTTGAACCAC-ACGTTTTGGGGTGATTTACTATTCAAGAAC------------AGATAACTAAAAGCCTGTATCATTAACTTAGTTTGGCGTTTGTTGTGAAGTACGGTAATTAGATTTGGCTGAACTGGAATGGATATTAAGGTCGACACAAGAGTGACCTTTATGTTCACCTCAAGTAAGTGTGATGAAGCATATAATGCATTTTTGA--CTTAAAAATCAAGCCTGAACTTCTATCAGAAGAATGCTTTTTATCTTAATTGGAGTTTAGTTAGTATTATGTTTGTGAAGTAGCCACAGGGAGGCCTCCTGACCCAGGTTTTgtatag-aaaatcaaagtgtGAATCATAATTTTACAGGTATTGAAAAA-GTATCTTGCATGTATGTTTGAATTCAGAGGTTAGCATATTTAAAGGttttttatattgtctt-ttaggacaatttaaaatgaaagtaaaataatgtgTTTTCCACAAAAGTGAATGCTCCTTTTAATTG-------AGGATAATACAGGGAAAAAATATCTCAAAGTGGGTATAAACTGGAAGTAAAATAGAGTTATCAGATACATTTCAGGGTGGCTAGATCAATTTGAATTGGGAATAAAGAATGAATTCACTTTTAGTATATTCCCTGTGAGATATTTGgaatatatttacattaaaaatttattcacatacgaaatgaaattcagatttaaacagcaagtattattttttctttgctatccgtgtaaaaatcaacaaatatttattgagtcag-CAGAGGGAAGACC----------TGGGTAGAGTGAGATGCTGGTTTTGAAGAGAGAAACTGAAAGGTAGGGAGGGAAGAATGCAGCCTGAGAAGAGAGGTGGGCTATGAAGAACCTTGGTTTAGAACAGGAAACATAAATACGTTCAGGGGAgggataaaatttcagaaa

a score=58919
s chr3           150662392 3466 + 160039680 GAGTGCAATGCCCTCAGGGCTAGCTTTGGATTAAAATGCCTGGTTCATACTATGTCTGT--CTGCACCATGGTCTCACTCTCAGAAAACATGCTGTGTGGTACAGCACCTCACCAGGAAAA----AGGGTATCC----------------TGTTATATCT-------ACCTCTTGC---CTTTGGTTCATTCCACATTTTCAGGTATTTCTAAAAGGCAGGAAGAAAGAG--GCCAAATTGAATTT--ATGTTCACACATTTTGAAGGAAAAGTTCAGCAAGAAAGAAACTTGTAAAGA-------GTTGTTTACAGTTCGGCGTAATAGTCTAAACT--GAGTTGGATAATTTTATACATTTCAAGTAAAGAACATAGTGGC-CTGTAAAGTCTGCAAAGATCACATATTTATGAAGATGCAGGTAATTTTTTAATATCTCCTGACAGGTGGCCTCCATGGATTCTTTGTTAACTACTTCTATATGGCTCCCACTAATTTACCTCATTCCATAGAACTCTTGTGTTTACCTGTGGGTATATCAACAGTTTATGAGTTTGATTTTAAATAAGAATCTCTGTCTTATAGGTTGGTGAAGTTTCTT-----TTCTGCTTTTTAAAATGGAATCAGCACCTAAAATCAATATCCATATTCTCTTTAAGGTTTCATT-TCATGTTCA-CAAAAATTTACACTTTATGAGTCAGGGAGGGAAAACATTTTCATTTTGAAATATAAAACAAATATAAGACAAGCTCACAAACATCTTAAACATGTA-CCAGGAGCAGGTAATGATGAAGAGAGACATGCCTGCTGTAGATTTTTTATGGCAGAGCCTATGACCATTTTTGGCAGTGGAAGTTAAGTATTCAATTGCAAGAATTTAAAAGAAAAATAACAGCCAAGTTCTTTTATAAGTTTATCATGCTTTTGTGAGTTGGTATAAAATAGTACAGCATTTTAACTTCAAATTTTGAATGCATATTTTTT-AGACTTTAAGGCATTAAAATGTGTTTC-----TTAGTTGGTAACGTGCATTTCAGACCAGCAGCTGTTTCTCTCAGCC-TCAGAACCATTCTTCCCACTCAGAGGTCATTC----------TATTGTTGTCTGCATAACAATCCCTTCCAGAGACAGATTTTAAAATGGCTAGATTTGGGTTAATTGTATTATCCATAAAAGACAGAGTACAAAGAGAAAAAACTTATGAATTATCA--CTATATTCTATTTGTTACTTAT---ACATTTGGCTTAAAGGGCACAATCAAATTAATTTTATT--AGTAAGTCATTCCAGAA-AGCATTTAGGCAATGTTTCCACTGATTTCAAAGAATTTCTACTAATTTTGTCTTTTGATCCTCAGACCTCTAAATTATAATAGGTAACAACAGCAGCAACA-ACAACAATAAGAAAGTACTTTCCTTTGTACTC------------------AAAATTCAACTTTATGATTAAATACAAAGAA-AAATGTGATATAGACAAGCAGTAAGATGGATAC----ATGCTCGAGACAGTTGGTGCTCAGC-CTGAGTAAATGACCTCCATTGT-CTAACTGTGAGGTGTATCCAGTG-----TCTGCAATA-GGCTGTGTCATGTGCTTCCCCATGG---CCCACGTGATAAAGACTGCTCATTTGAATGTTTCCATTCAAAACATTCAAGAG---------------------GAGGCCTTTGGG---------ATTTCTAGTGAGTCTCTTTGAAGAG---AACTGGACCCAGTCACCTCCCATTTTTCTCTT--------------------------TTGCTCCATCCTTCTCCACAAGTAAGCATGGTTACACTACTGCACTGTGATGGCCCAC---ATGTATTGAGGC------CAAGTTT-TTATGGACCAAATCCCCAAAGCTATGATAAAAAATAAACCAATTTCCTT---ATAATCTGATCCTCCCACATACTAGCTGTACTGATAGCAATCTGACCACCACAGTGTCCAGATGTA-AGGTTTTGTTCTCTA----------CCACGCCTGTGTCATATGTGAACGACTGATTGAGGGACTGGCCATACAGGTGAGCCACCTGGTGTCCATAAATACATACATGTTTGGTTAATCTGAAATTTT-CTCTTTGTGGAGTTAAAAATGA--------------AAAGTAAAAA--------CTTCTGCCCCATTA-TCAAATTTGGAGGACAAAAATTTAATTTAACAGTTGTAACACTCT-TCTTTTTCAAGCATACTACAGATAATATTGCATGCTACAAAGAAACATATTATCAAAGATTA------------GTAGTTAT----GCCAAGCCCAGTGAAACAAATGTGGCTTTTTTTCTTTCAAAGCAAGACCCAACCACTACCAGTTTGCCAGGTAAAGGTTTCTTTGTGA-GAACTCAGACCCAAAGTCTTAGACAATGGATAAATTGGTCAGGTGTACATTTGCAGTGTTATGAGTTTACGATATTTGGGTTTGTTCAAATAATTCCATGTATCTGGTAGGATTTGTATATTCTGTGATGATTTAATCTAAC-ACAGCTGCGGCAATATAAATTACACTTAAGACTTCACTGATTGATGGTAATCAGCAGTAATCATGTCTTATAATTGCGTTGCATTCGAGAAGTAGGGACTGTTTAAGCCGACTCAGCAACACACCATATAAAGAAGATTATTTGCTACTTCTGACAGCCTCAGTTAATATTCAAAATTGACTGCAAACAATGAGTTTTATT-AATGCATTGTCTAAGCAT----AAAGTTTCTTGATTGGGCCTAAGAAATTAAACAAGGATTTCAAGCCAGCATA-----CAATTATTATTGATCATGTAGACTGGACAACATCTTA--GAAT-TTTTCATGATCCTGAATATGGGTCACATGGATATATAAATCTTTAAAATATGCTGCGTTTCAATTTACATAGAAT--TGTGAAGTGAAATTTGGGGCTATAGAGAAGTATAGACCAAAGGAAAGTGGCAGAATGTTGATTGTTCATTAAACAGGGTTATAAGTCAATAGG-----TGCCTATTATATTTTGTTTAACTGTATAAGTGTATTGAAATCTTTCACTAGCTAATCAATGAACAAAT--------------ACATGGAACTTTTAAAAAGATGACAAGTACTGTATATAAGCTCTTTAGTGCACCTACAATAATGGTAAGTGTGTTGCTTCATGAGTATATATTACTATATTCAGTTGTTTACTG-ACTGACTAGGTTtgaggattgaatccagagcatcacactttatagtcaactgctctactactgatatacacttcagcctcTGTTTATTGCTCGTA-ATTTTAAAAGTCTTAAGGGATGAACTAAGTTGAAATTAATTCATCTTATTTTACCAATATAGGGAAGGCCCCCATACTCTCCTTT----AGCATAACCTTTCATCTTACCTCTAAATCACTAGTCTCACTTCTGTATGTGTTTTCTGCAAGCCCCAGTAAGCCCCCACCTAGAAA-----ATGCTGTCTACTATACCACCAGTGCAGCATTGCTGAA---TTTGAACCTGCACACAAACACCCAA-------ATGAAGCC--TACTGATATTCTGAATGGGATGCACACAGCTGATTTTGAACCTTAATGAACCTCCTGACTCACTGTGACTATAGCTATACCCATATTGGAATAAGAGAAAAGTTAAAT
s HiC_scaffold_1 137273178 3484 + 233722169 GAGGGTACTACCCCAGAGGCTGGTTTGGGGCATAATTATCTGCTTTCTCTTGTGTTTGTATTTGCACACTGCTTTTAATCT--GCAAAGCTTATGTGAGGT-CAGGAGCCTGCCTGGAGAAGTCCAAGGCACCCACCAAGCACAGGGTGGTGGCACATCTTCTTATGACCTCTTGCTTACCTAGGCAGGTGCGAGCTTCTCTGATA---CTCATGGCCAGAAAGAAAGAGCCACTATCTTGTATTTTTATGCTTTcccattttaaaggaaaatt---gtaCACAAGAAccttctgaaaaataatttgttgACTTTACTTTTACAAAACAGTATAGGCTTTGAGTGGAATTATTTTGTACTCTTTATTTAAAGAACATAATAGTTCCATGAAGTAC-TAcagatgaaatatttatgaaaatgcaGGTAATTTTCTAATATCTCCTGACAGATGGCCTCTGTAGATTCTGTATTTATCATCTTTGTGTCGCTCCCACCAATCTTCTTTGTTCCATAAAA-TCTAGTGTTTACCTGTGGGTATATCAATACTTCATGAGTTTGATTTTAAATAAGAATCCATGTGTTGTAGCTTAGTGagagttattattatttttttattttgaaatgtaatcAGTATC-AAAATCAATATCACTATTCTTTTTAGGGCTAAATTCTTATGTTCAGAAAAAACTGGTgctttattttttggaaaaaaatatcatt--ccttttgcaatgttaaaaaaa--------aagcacacagatattttaaatatgcaaCTAGAAACCACCAATGCTGAAGGTAGATCtgactgctataaattttcaaTGATGTAACCTCTTATCTCTTTTGATAGTTAAACCTAATTTTTCAGtgacaagattttttttaaaaaat----ggctattTACTTTGCA--TTTACTAATGCTCGATAAGTCTGCAAAAAGTAGTGCAGAATTTTAACTTTGAAAGCTGAATGCATAGTTTTTGACATTTTAGATCATTAAAGtgcattttcttctttggttgTGAACTGGTATTCCAG-CCAGCAGTTGAT-CTCTCACCTGTCAAAGTTTGCCTTTGCACTTCCGGGTTATTAGcccaaattacattttt-------taaaaatcctttctagAGAATGACT--AAAATGGCCAGGGCTGTGTTAATTGTATTATTCTAAGAAAACTTTACATAGAGA-AAAAAACTGTTGAAGTTTCAAGccacatt----ttgttatctttgcaACATTTAGctcaaggaaaata-ttaaatcagTTATATTGTAATAGATCATTTCAGAATATCATTACTAC----TTTTTAATTAGGTCATAGAACTTATATTAATTGTAGCTTTTGATCTTCA--------------------------CAGCAGTcctatacaagaa-aaaaatgtgtttcccTCTTTGATCTCTGTGTTTAAATCTCAGAGAACtcaattttacaaataaatacagtaaatagATGGGATATA--TGAGTGGTAAAAAAAAGATGTCAATGTTTTTCCTCTTCTATGTTGAACACTTGACAAGctactttcatttttctaactTTACTGAGTTTAAAGTAATGTATTTGTTATACAGCTGAAC--TGCAGTATCCACTGGAGTCCCATGTG--------TTCCCAGCCTGATGCTC---TTAAGAACAGGGAAAAATTTGGCAGCGGGGCCTACTGAGAGGTCTTCAGGTCACAGGCCATTCCTG------CACATGGAAAAGTGGAACCGGAACCCTCCCTCTCCTACCTTTCTATTCTTGGCTCACCATGTAGTGAGAAGGCTTGATGCATCACCCACCTCACAT-----------CCCCGTCATAGTGTCATGCTCCATGGTAGATACCAAAGCAATGAACAAATCAATTATTGACTAAAGCTTTCCAAGTGGGAGCCcagataaac--attttctttttagaagCTGATTATCCCATGCATTTGTTGTCATGAAAGAAAGCTGATT--CACAGTGCCTAAgttcatattctttattttctcaaaggTTCATCCACAC-TGTGGTTTAAGAGAAAGCCTGAACgaacttctttct-----------cttccttttctccacagaTATAT----GTTTGATGAATCTGAGGTTCAactcc-----aaatttaaaataatgtaatagagacttaaaataaaagttgtgtatcttttatttcattcctcATCATTGAGGGGGGCTAACTTCAT--AAAtgtagtaaaatattatttttttcaaatataagagTAACCATACTGAAtattatatgcaaa-atattaGTGAGGACTAAATCACCAGCCGGAAGTCATACATGCCAAATATAGTGAAATAAA---ACCCTTTTACACTTCAAATCAAGACT-AGCCTCTATAG-------AGAGAAAACATATTTTGTAATAAACAGAGTTCTAAAGTATTAGACAATTGATAAA---ATTTATTATGCATTGATAGCATTATGAGTTTACTGTATTTGGGTTTGTTCAAATAATTTCACATATCTAGTAGAAATTGTATCTTATGTGATGATTTAATCTAACCACAGCTGCAGCAATATAAATTATACTTAAGACTATGCTGATTGATTATAATCAGTTGTAATCATGTCTTATAATTACATTGCATTCAAGAGGCAGAGGCTGTTTAAGCCTACTCAGCACCAAGCTATATAAAGAAGA----TTGTTACTTCTGACAGTCTCAGTCAACATTCAAAATTGCCTTCAAACAAtcagttttattaaatttattgtccGGGCATTTAATAAGTTTCTTAATTTGTCCACAGAATTTGAAATGGAATTACAAACCAGTATAAAGCTTAATAACTGCTATTTATACAAA------AACATCTTATTGAACATATTCATAATTCT--------CTTCCATTGAAGTA-AAGTTTTTGCAA------GTGTTTCAGCGTATGTAAAATCATATAATGAGAAAGTCAGGGATAGAGTAAGAAACACGTGAAACAAAATTGACTG-ATGTTGA---CTTATTAAAT-GGGTAATAGGTACATAGAATTTCTATATGTTATTATTATTCTGTCTGT-CATGCATAT----AGCTTAAATTATCTA--CAACAGAAAATTTATATGTCTACATAATATagaatgtgtatatttatg-taaata-tatatgttagGTTTT-------ACTGCAACAATGACGAATTTCGTAC------------CAATGCTATAT---GTCTTTAACAATAATGACAAAG-GTgttatttaaatttcatgtaCCTGACTCT-----------CTTTATTTCTTAGAGAAACACTA------------TGCCCTTACACTTCAAAAATCCAAATAGACTGAATGCTTTGTAACT-CTTGAAATTGTCTCAC------AGCAGAAGCCTCTATTCTCTCCATTCTGGAGCTCTTCCTGTGGTGGTGCCACTG-----------------------GCGCTTACTGTATGCAGCAGTTAGCTGTTGGGTAGCAATGGTTATGCTGTTCA----ATCATCTGTGCCTTCCTATTGAAGATGGTGACACTTTTCCCAAATACCTGAACCTCCCATAAGACCAATATTAACATTCTAAAT----TGCACAAGTCTCATTTTG------AATGAGTTATGGGGCTCATAATGATTAGAATTATAGCCATTTCAGACTAAAAGAAAAGTGAAGT

a score=51359
s chr3           150675805 3218 + 160039680 aAACCCCAAACTTAGCCTTGCCATGACTA-TATAACCTAATCTGTTACCTTCATAGATTTCACACATAGAGCAG-TGGGGGAACACCATCTCTACTAAGAAAAAGCTATCCTCAAGAGAGGGCTGATGTAGAAC--AGGTGGCAAGAAACATCTCCAATGTTCAAACAAGATCTTCCTTGGTGCTTAAGTATGTGTCTTTGGCCAGAAGCCCAGGGGCTGAACATAGTATCC--TGGATGAAAAGAAGCAATCCCAGCA----------------GCCTTTGCTCAGA-TGAAGTG-CTAATTAGCGACACCTGGCTCAGGTAAAGAATGGAGCCATGTGCAGTGCACTGGGAATGAGAAACTGGGTGCAACTG---AGCTCTTGCACACAGTGCTATGACTGCTAGATCCTTCTTCCACTTCTTC---CTGCCCTGTTTCCTTGATGATATTTTACCTTGATGTTTATTTTCAACTCCCTCTAAGATTCCTGTGGAAGAAAAAAAAATATCATTTGGTAATATTCATGACAGAAGAGTTGGCAGATAACACATATAAATCTGTGTCCTC--CCTTTCTTTGTC--------CTGGATATAGTTAGCACACCT------------------------CTGCTTCATT-------------------------ATCTTGCATCC-----TGAATGCTGTGCTTG---------TTCATGCCCAAGACTGTGGACTGGAGTAACTCACCTGTACTGTACTCTCATAA-CCACTTT---AAGGAATTAAAATGTTACCT-------------CAATCCCATATAAATTACTTGAAACTAAATAATTTAATTAAAGCATTATTCTATGAAATGTATTAATCATACAAACTTTCATGAAACAAGAAATTAAGTGGACTCAATATAAATTACTCAGGACTTTATAGATAAAT-ACCATCTGTTTTATGATTCCTATGGAACTTGTTGTTGTGTAGGAATACAATTACATAGGGAAATGGTCTTTGCTTGGTGAAGACATTGCTACTCAACTGTCAACAAGAAAAATCCTGAAATCGATTAAAGTAAGTAACGATAGAGAT----GATAAATGTCTTACCATTTAAGCTATGGGAAATTCAAAGAAGAAAGAAACAGAATGACTGACCTTCCACTAGCCTCTTAGGTTGAGTGAGGAGCTCTCAAGTGTGAAAATAA--------GCCC-----AAATGCTTTCATATTGAGAATGAGTGGACT---GAGTGGGAAAGAGTTTAAAGTCTCAGGCTGCTGATATCGAAGGCTTTCCCCCATCTTGAGAGCTTAACCCTAGGAGCAAGATGCTATAACTTTGTGTCTTACA----AAACACGAGCGTTAATGTAGTGAGGACTAGCTTTGGACAATCTCAGATCCCTCCCCATCCAAGGATTTAGTTTAAAATGGAATCCAAATTATATCTGTAGCAATTGTAGGAAAT-GGAGGGAGGAAGGCTATCTCATctgatcctttgagtgagatagaaacaaatctcttctttgaaactgcattaacttgtatcaagtacccagaatccacttaataaattgCTTTTTGCTTGTGACCAGAAAGAGTTAAGATACGTCTAAATGGCAAGCGGTTCTCAAGCTCCAGGGAAGTCTGAGGTGAGATGGGTTATTAAGAGAAGTATAAGGTGCAGAAGTTAAGGTGGTGGGCACGCATGCCTTTTCAGGACATTTCAGTGATTGGCTAT-TCTGAC-AAATGTACTTATGAACCTAATTGACATGGTATGAAAGATGCTAATTACACA-----------GAACGTAGAATATATGTAAG----------------AGAGTGG---------ACAAAACAAAG-AGAATTTTTGATCATGTTTCTGTTGAGAAATAAACAGAGTTCATGCCTCCATATTTCTTTCACCTCTCCTG--GATGTAGCCAATCATTTCCTTGAAACATCAGAGTTCCAACAAT-CTTGGATGCTGGTGTTCTCTTAGGAGATGCATAGAGAGAGGTCCTCTGTTGCTTATTCTGTCTATGCAATC---AGAGGATGTC---TCTGCCCCTACATCGATCGTTTCC---ATTATGCATCTGAAGAAATTAGTTGTAATAACGTGCTATTAAGATTGGA-TATGTATAGTCCTCTAT-CAAGCCCATCTTTTGACATTTGGAGTAAAAG-----ACGAGCACAGTCCTGCC-------CGGATAATGAAATGGTAATGAACTATTGTATTAAGGTGCATTCCTATTGTGCTTATTTCCTGCTCAAATTCAACTAAGGAAGTAAAAGCAACATGTAATCCTAAAAAAGATAGTTTTATCTGCTGTTCTTGGTTGTTAGACTAATAGAATGGCGAT--GCAACACA----TAAACTTggcttggcagatggatcagaaagtaaaggcacttcctgctcaccccaagggcctaagttttatgtctttgacttatatgttgacaaaagagaaccaatgcctgcatattgtgctgtaaattgcacacacaaacacacacacacacacatacatacGTACATACAAACACACATATACATGCAAATTCACACACATCTAAACaaataaataaataaaatttaaaGGACAATGTTTATAAGCAAGAGTCAACATTTAATATTATTCAGTTATA-ATATATTTGTAACT-TAATAAATTTTTACTGAGGCATCTTACTTGAATGTATTAAGGGAGAATTGAAAATATAAGTGTGTCTGCCAATGTCATGAACCTAAATGTGTGGCACTCACCATCAACAAATAAGAAT-ATGTGATTATACTAAACACCTAATACCTAGCTTCT-TCATGGAGTACATTTTCAATGTTCATTTCTCTTTCTGAGGATATTTCCTAATAAGAATTAGTATTTCCTTCATTATCTA-TAATATAGAATTTATTTGTTAGTGAATTTAGTAATAAATCTTTATTATTCTTAAAATTGGATGAACTTTAGGAGAAATTGACATGTTGTAAATACTTCTATCAATCAAAAATATCTTTCATAGTTCAGCATGATGGTTGCTGCCAGGGTAAC-ATTATATAAAGGATGC----------------------TAGATTTGAATAAATGCCAATCATAGAAGA--GTTTTGTGCTTTT--GCTCCAAAAATTATCTTCAGCTTGATATTCACTGATTAATTTGATGACAACT-AAAAACCCTGAGAGACATGCAGTTTAAGTAGTATGTAAAATTCCTAACCAAAAGTTAGAAATGTCCAGTAATATTTCTGACTAAAATGTATAGCCAAAAGTACTAGT--CTCTCCTTGAAACTCCCCTTTTCCTGACATATCCATTTCTGTTGCCTCCTAAAACTTATATCTAATTAAC--ATTTAAAATTGTATTTTTAacacacacacacacacacacatatatatatgtat
s HiC_scaffold_1 137286574 3217 + 233722169 AGACCCCAAACTCAGCTCCATCAT--TTACTACAACCCCACTTCCCACCT-CACTGGTCTGCTGTGCAAGCCAGATTGTAAAACAGCATCAGGATCGAAGGAAAGCTATTGAAAAAGGAGAACAGATGCCCAACTTCATTAACAAGAAAATACCTTTAAACTGAGAAAGGATTCAATTTTATGCTTAGTTTTCTAT---TGGCCAGAAGTTCACAGGTTTCATGTACTGTCTAGTGATTCAGAACACCTGGTTCAGGTGTTGTTTAGACATGTGTGCATTTGTTCAGAGTAAAGCAACTGACTC-CAGCAGGTGGCTCTGATGA----------CATGTG---------GGTAACGTAAAGCTGGTCATAGATGGCAATTCCTAACGCTCTCTGTAATACTCCCCATCTTCCTTACCAAGTCATTCTGACTGCTCTTCTACCATTATTGTCCT----CTGGATTTTTGATTTCTAGTGTGTGTAAG---CCTAGTGCAAAAGGAGGAGGCTCACTTGTCAAAATTCATTACTGCAGGGCTGAAAATTATGATATAAAAGATCATGTTTTTGTCCATTCTGAGTCAGAGATTCCTAGGTGATTTTGGCATAAATACTGATTTTGAAGATGTTGATAATCTGTTCCACTTGTTCTAATGACAGCCCACCCACCTGTTTCACATCCCTGTTTGACTGAAGggcctgcattttttttttattactactaTGATGAAACTGACTAATTCACTTGCTTGAT-----CATAAACTACTCCgacaagaaataaaactatttctttGTGTAGTACCCACAATCTCACTGAAAATAATCGAGACTGAATAATTTAATTAATGGGAAAACCAATAAAAAGTATTATTCATGCAAAAGGATCTAGAAAAGGCAATAAATGAAAACCAATATAA-TGATTCAGACATTTTCAGATAAAGGAAAATCTGTACCATGTCTCCTGCGAAACTGATAATTATATAGCAGTTTAATTACACAAGAATATGATCAGTGCTTGGTAAAGATATTACCACTTCGCTGTAAATAAGAAAACTCCGGGAGTCTATTAAAGTAAGAAACAAGAAGGGAAAGAGATGAATTGCTTAACATTTGAGCTTTGTGAAATTCAGAGAAGAGTGAAGCACAAAG--TGACCTTCCACTAGCCTCTTTGGCTGATGGAGGAGTTCTTAGGTGTGGAAATAACTTGTGTATCCCCTTATAAACGCTTTCATATAGAGGATGAGGTGTCTCTGAGAAGAGGAAGAGTTTAAAGTCTCAGGTCTCTGATAgagaaagctttcccacatcTTGAGAGCTTAACCCTAGGAGCAGGCCGCTATAACCCTGTGTCTTACATTTCGCACAGGA-----AATGTAGAGCGAACTGGGTTTGGG-AGGCTCAGATCCCTCCCCAGCCACGGATTTAGCTTAAAATGGAATCCAAATTATATCTTTAGCAATTGTAGGAAATAGAAGGAAGAAAGGCTATTTGACCTGATCCTTTGAGTGAGATAGAAACAAatctcttcttggaaacagcattaGCTTGTATCAAGTACCCAGAATCCATTTAATAAATTGCTTTTCTCTAGTGTCTCGAAAGAGTTAAGATTCCTATAAATGGCGAGCAGTTCTGGACCTTTTGGGCAGTACGAAGTGAGATGagttattaagaaaaatatgaaatacaacaGTTAAGGAGG-GAGTA---GTAATTATCCAACG---TTAAGTGATGAACACTGTCTAATGAAATATACTTATGAAAATACT--ACA-GCCATGAAA-ATGTTAAGCATTAAAATTGACctggaaacataaaataattgcaaaattaaTTATTGGAAATAAAGTGGGACAGTGAAACAAGACCAAGCAAAATCTACAAATGAATTTCCATCAGGCTACAATAAGAATTTATGCACATTCATTACTTTGATCTTTCCTGGAGATGTTGCt-tccatttctttgaaatatctgAGTTCAGAGGAGACCTGGAGACTACCTCTGTCTTAAGAGGGG--TAGAGAAAGGTAAATTATTGATGATT-TACCTCTGGGGGCACAAGGGGACATCGCTCCTTCCCATGTAACAGTCTTCTCCCTTCTTATACATCTGAAATGATTGACCATAATGATATCTAATTGTACTTTGATTATGTCTAATATTTACTACAAACCcatctttttacatttaaaatttaaggtaAAATAAACTAAATTCTTTTATAGAAGCAAAGTATAGAGTAGCAGTCAACAATTTTACTAACACATATTCTCATTATATTCAGTTCAT-----ATCTCAGTCAAAGAA--------AATAACTATTATTAATA-----------------------TGGTCATTAGGCTTA---AATTACTATCAgtaatttatgtttaaatttatctttatagAC---------AATAA-------------TCA---------------TTTAATAGCGTTATCTTCTAtaata-------------------tatttatggttttttgaAATACTTACTGGAATAT-------------------------------------TTTACTCCCAGAATTCTACAAAGTTTGAGAAATGTACTCACTGTAATATATGTACAGT-TGTATAGATTATATTCAACATAC-ATATTCATTAGATATGCATATATCTGTagatatattgaaaatatatgtatgtatctgttATACATACATTGAA--------------------ATGTATGTTAATG--------CTGACT---TGGAAgccatttttaagagaaaaaactaaTGTCATAGTATTAAA---ACAGTTTCTAGTTTCTGTAATATAACAGATATTCAA-AATCATACATCTTTCTTAGGATATTTACTGTTACAAATGAA-----ACTGTATTATTTCTTAATATAGTTTTCTTCCATTTGTCAATTTTAT-GCAagcttttatta---taaaatttggaTAATCCTTGAAGGCAAGTGCCTTACTGTAAACACTT------ATAAAAATTGTCTTT-ATATTTCAGAACGCCAGTCACAGAGGGGCtaccttttaaataaatgatgccTTAATTCACAAAGACTGACAATAAGTTT---CAAATGCAAGTAGTTGCAGGACATTTTATAATCATAGGGTGTAGAGAAATCTATTGACTCAGCATCAACCAATTAATTAGACAACATTTGAAGAACTTCAAAAAGCATTCAGTTAAAGTA-Tctgcaaaaattttaaacatactccaaaaatg--cagttttatttctttctaaaacctGTAAAGAGAAATACAACTTATTTTCCTTGGGGTTTGTAGTGCTCAGATATGT-CATTCTTGTTATATTTT-AAGTGTAGTTTAAattaacttatttaaaaatttattctaaatGCCCAGATTTTCTTAAACACAGAACTGCGTAT

a score=34331
s chr3           150679796 1230 + 160039680 TAAAACCAAGGAAAATGATGTCTCTACTCCAGGAAGTGCTTCATTTAGTCACCTA-------ACACTTATAAGTGGGTCTGAAGGTGCCACTACT--GTTTGCATGTGAACCGGAAAACCTGTTAATTCCCCATGCTGCCTCCTTAACAACTTCTTGAGGTCATTTTGTATTCTTAACTGATCCTCGAAATATTTGATTTGTATAGAAGTGGCCCTATAAACTGTCACAGTGTTGTATGGGAGTATTCTGGTAGTATTCCTCTGTGGGTCTCCTCTGAGCTCGCCAGTAAATACTGTAGATTATTTAAGC-ACTTTTGTATATTACATATGTTTGTACA-TTTTATGTGCTTATACATATTTATAAGTTTTTAAAAGAATCATTTTGTTTACTTGCACAGTTCATGTTTATTGGGGAATATATATTTATGAATGTTTTAAACCATGTTATAGATTATATGAATACACATTTAGTTATTTACCCCCAAGCCCTTAGAAATTTCCCCTGCACTAGTTACTGTACAATTTATTTATAGTAAAGGTTTTGCAAAGGGTATATTTTCTAA--------TTTTTCTTCAAATAGACATAAGAAAGACAGGTTCACAATAATTCAGATTTTGCTAATTGCGTTATTTGGGAACCTTA-TTAATGAACACATATATGATGGTGGTGGACTCATTTCTAATTAGAGATGTTTCAAACCTGATCTACAAAGGGTGGGACATTTATAATG----ATTTTATCTTTTGCCAT-TGCAGAACACAGAGCCTAATGAACTCATATCAATAAGTAATTTTT--CTATTGTGTATAA------------------CAAAAGAGatatatatatacatatatatatatatacatatatatacataaac----acacacatatc----tatctatctatCGGATCTACATTATTATAGCATATATAATGTTATATCTTACTTTCTATAAACTCTATATAATTTGATTGTATTTTGGCATGACTTGAAAGGTCTAGGAGTACATGTGAATC-AGGTACCATT-TATTCCCCCTTTCTTTACAGGTAATATTTTAAA-ATTTCTTGTTGTTTAGTGTGTTCAGTAATTTCCCTCCCATTTGCAAGTCCACAGTCTCATACCTGAATTGCACTTCGTGGGTAATTAAAATGACTTTAGGTCTCTGAGAACTGTCATGTTAGTGTATAAATGACGTTAGGTCTCTGAGAATTGTCATGTTAGTGTATTCAATGGACACTTACCACCTCTCATTCACAGTGACTTCGCA
s HiC_scaffold_1 137289908 1213 + 233722169 TAGAGCTGAATAATATAAAAGTGTCACACCATGAGATGCTGCATTAAGTCCtttgtttttatgcttttataaGTTGATCTTAAGGCATTGTTACTATGTTTGTATGTTAACCAACAGGTCCATTAATTCCCTTAGCTGTGCCTTTAATAGCTTTTTGGGGGCATTTC-TATTCTTAACTGAGCCTCAAAATATTTGATTTGTTCAGCAGCGGCCCTGTAACCTGTCACCATGTTGAATGGGTGTATTCATGAAGTATTCCACTGTGGTGCTACTCTGAGCTCTCCAGGAAATACTCTGGATTATTTAAGCtgtttttatatattacatagatctgtacatttttatgtggttatacatatttataagtttttaaaagaatcattttgTTTACTTGAACAGTTCAAGTTTATTGgggaatatatatttatgaatgttttaaGCTGTGTTATGGATTCTATGAATACTCATTTAGTTACTTAGCCACCAAATCCTCGAAGATTTCTTTACACCAATGATTTTAC-----ATTTAAGGTAAGTGCTTTGCAAATTTCATCTTtgtcaataattttttttcttttcaaata---atgaCCGAGATTACTAGATgatactttatattttgtttatagaaCAATTTGAAAGCTTTCTTTGAAAAACACG-----GAAGAGTGTGAAAtcatttctaattaaaaataattcaaa---ggttCTTAAAGTCAGGAACTTTTAAGATGTGGTGTCTACTCTTAGGCCATAAACAGAATACTGAGCTTCGTTCATACATACAAATATTTACTGTTTGCCTATTTTTCAGAAAGCAGCtatgccaaaaacaaaaagagatataaaaatgaa-----aaagatattcaCCTTTCTCCAGTAATTTCAGTGTACATATCATTAAAACTGTCTATTAACTTTAC-TCATAACACAACATATTACGACA----------CCTATAAGTACAGTAtgacttaagaatattttattagtactcGATAGGGCCAGAAGGGTGTCCTACTCTATTTATCATTCTACTTTATTCTCCTTTATAGTTAACATTCAAAAGAGTTCTCATCACTCAGTATTTTCATTGCCCCTTCTGTCCTTTACAAATCAGCATACTCTTATTTGAATTCCTTCCAGCAATGCATTGAAATAACTTCAAATCTCCAGGAAC----------------------------ATCTCAGACACTAATC------------TCAATAAACATGTATCATCTCACATCCTCCTTGACCTAGTA

a score=14773
s chr3           150683981 1081 + 160039680 aaaagagacttatttcacaaatatatcaaattaATAATTAA-----TATGACCAATAGGATCAATGTGATAAAAATGTTAAAACCAAATGAGCACTGATACAAGCAATCTATTTGCACAAGATGTATGGATATTTGCATGTTCACAA------------------------------------TGTAATTGTATG-------CTATAGATATATA-------------TCCATACAAGAGTATGTA-------ATATGTAATATTTTAGTGTCTA-GTATATGTGTAT---------ACTCATAGGTACAGCCTAAGAAATAGGATCAACTGTTGTAAGAGGGCATTCTGAGAAATGATTTCATTCAATTCAGAAACAAT-TGTGGCCACCTGCTGACAATTGA-----------GTCTATTTGAGTATTGAAGTAATATACTGTGCAAAAGAAA--GGAGAGCCAAAACTTAGAACAGATAATTATTAT-----------------CCTTCAAATTTACCATCTTATAGACCTTGAAAAATGTACAGcacacacacacacacacacacacacacacacacagatgcacaaacacccacaTGCTGTC----ATTTGCCCAGGGCCACTTTTTCACCTACAAATATTTACAAATTTTGATATATTCACAAAGATTCTAAACCTGGAAGTTGGTTAAAAACTGCCATTTTCATTTGTCAAGATAGCTCCCTTTTGCTCTTTTCATTTTCAGCTTTTTTCATGACAAATACTTGTCAAATTAACAATGCACTTTAAATGTATAGTGTATTAAATTCAGGATCTATGATTGTTTAGTGAAATAACTGATTGCAAAGCAAATCATACTCAATAGCTTTCATCTCTACCAATAGCAACCAGTTAATAAGTATAGCAAAACAAAGG--CCCAAAATCCAATCTCCAATAATTCAATTACACAGAACAAATTAGACTTAAATTAATTTT---AGAATGCAGATGATGCATGTGACAACACC------------CACCAGAGCCTAAACAATTTCTTCAATAAAGAGGTATGCTTTACAGATAACAGAAAGTAACCATAGTTTACTTAAGCGGAGGAAAGTAATGTAAGATTTCTTTGGCC---ATAATACCAGGTTACAATGGGGCTGCAAGAAGAAAAATAATTGGAAC----ATTCTATGAACTTCAGGAAG----TATGTTTTGTAG
s HiC_scaffold_1 137292862 1112 + 233722169 AAAAGTAACTGGTTTTTTACGCATAAGATTTTCTCAATAAAGACTCTGTGATTAATAGGAtgattaaagtaaaaatggaaaattgggagaaacattattataaataatctgGTAATTATACATGTAcgtacatatacatgtacataaatatgtatgtacatacatatacttATTTTTAGAAATGGTAATTGTATCTTTTTCCCTTTACATATGCACACGAATATGTTttccacacatacatacatagacaaTCATATACAGTACatacatttgcatatatatgtgtatgactGAAATAGTTACGTGTACA--Ctaagaaaatacattaaatct---AAGGGAATATCCTCAGAAATATTTTCACCAgattcaaaaacaagataatccCACCTACTATCAATTGATCTCCtcatatgtttataaaaattcttGA-TGATGCACTATGCAAAATAagttagaaaatgaaaaca-aggttATGTAATTATTTTGTGATGGTATATTCTTTCCTTAACAATAACCATGATATTCACCTTGGAAAATATATGTTACATA-----------------------------------------------GCTGTTCTCAATTTTTACATGCGAAGTTTTCC-----CAAATGattccaaattt--------------aaattttaacattttaaattttttg-----tgtctttttgatgCAGTAAGATTTCCTCCTTTTACCTCCTCCA-----AATGTTTTTCATGACAA-TGGTTGT-----TAATAAtggtttttaaatgtataatgtcTTCAACTTAGAGTGTATGACTGTTTAGTAAGATAATTGATTATAAAACAAATCATATTCAACAGCTTTCATCTCTATCAAGAACA---AGTTAATATATATAGCAATACCAAAGACCCTCAAGTCCAATTTCAca----tcaattatataaaacaaattagtatgaaattaatttttaaaaaatatgtatgacaaatataATGAAAACCATAGATCTTTACACAGGAGCAAAAATACTTCAGTAAGTGAggaaagatg-tttaaaaatactGACATATG-----AATTTAATTAGCCATAAAGAAGT--TTTCAGA-TTCTGTGTCCTGTGAAATGTC---TAATGGTATGGCTTCAAGACAGAAAAGACTGGGAACTCTTATTTCAT--ACTTCTGCATATTCTTATATTCTGTAG

a score=37564
s chr3           150691568 964 + 160039680 AAAAATATGAAATGTCAATCACATTTTTGAGCTGTAAACTTTAATTCCAATCAAAGAAGATCAGTGTGTTCTCAATTTGATATTAGGAGAGTGTGAGATCAATGTTATTGACTTAAGAGGTTCATTCATTATTTATTTTAAACTTTGTTTATTACCC--GTTTCATATAGAAACTAATTATTTAGACGAGGAACTGCAAGTGTCTAAATTAATATTAGGAAACTTAAGTGTTTGCCCTGAGGCAGCAAAATTGGACTTTGTGAGGAAGCTGATCCAAAGTTGTGTGCTACAAAATGCCTGAAATTAGCCATTAAAGGGAAATAATCTACAGCCATTATTTCCCACTGGAGGATAACTAAATGCAAATAATAAAGTCTGCAGTGTCTTCCA---------------CTTTGAGGAAATAGATTTGTGAGTGGCAGCTGTCAGAGGAGCTTGCCTTATTGACACAAACCCTCTCAAGGTCTGTAGTTTGGAAGTTCCTGAGGAGATGGCAGTATCCCCTGTGCGTTCAGGTAGGGCTGCAGCAGTAGTTCCATTATCCACATCTAACAGCAACTCAACAGATAGGAGGCTATGATACAGAGGTAGATGTATGGAGTCTCT--GCAAGGAGGTCACCTGAATATCAAGCAATCT----TTTCACTGATAAAAGCAACTCTCAGTTCTGCTAAGGGGAGATCAGCCAAGGGTTGGGACCCACGCTTTTGAGAGCTAGCAAAGAGAGAGGGGCTTATGGGTC------------TCACTCGAAAT-TTCTGATGGCAACTCTCATTAGTAAAATCTTTTCCTTTTCTTTTTCTGACATTTATGAATTCATTTATTGA--TGGAACAATTTTCTCTGTTTTTCTTTTAACTTGCTAATCAAAACATGGAC-------CATAGCCCATCATCAGAGATATAAGCACTGTGGGAAGGCTCGGTGACACAGGCTAATGGATTCTATATTTAAAA-CAATTCTTTCTCTTCCTGGAAAAA
s HiC_scaffold_1 137300540 981 + 233722169 AAAAGTGTAAAGTGTCAATCATGTTTTTTAGCTGCGTACTATAATTCCAATCAAAAGAAATTGCTGT-TTCACAG-------------GAGTGGTAGATCAATGTTATTGACTTAAG--GTTCATTTGgtatttattttgaagttagtTTATTCCCCAAGTTTCATATATAGACTAATTATTTAGATGGGAAACTACAACTGTCTAAATTAATATTAGGAAAATTGAGCATTTACCCTGAGGCAGCAAAATTGGACTTTGTCAGGAAGCCAATCTGAGGTTGCAAGCTACAAAATGCCTAAAATTGGCCATTAAAGGGAAATAATCTACAGTCATTATTTCCCACTGGAGCataattaaatacaaataataaaggCTACATTGTCTCTCAAGTTTCACTTTTTCCATTTGCAGAATTGTATTCATGAATAGCAGCTGTCAGAGGGGCTTGGCTTATTGACACCATACACTTGAAGCTTCTTACTTGTGCAGTCCCTGAAGAAATAGCACTTTCTTCTGGGGGGTCACCTTTGACTAAATCTGAGGATTCTATGAACAGAGCCAGTGGCAACTCAGCTCAGATAGGGCTCTAAAACAGACCTAGAAAAACAAAGGCCCCAGACAAAGAGGTTGCATTAAgaatacatctttttttctttcattcatgaaAGCAGCTCTCAATACTGCTAAAGTGAAATCAGCACAGGGTGGATAACCATTCTGTTGAAAACC-----AGGTTGAAGGACTGGTGGGTCACATAAGGATAATCACTCAAAACATTTTGACAGCAACTCTCATTAGTAAAATCATTTCCTATTCTTATGCTGACATTTATGAATTCATTTAATGACTCTCAAAAAt----tccagattttttttaacaCCCCATTTAAAACAAGGGAAGAAATGTGGAGTCTACAACTGGAA----TAGCAGTGTGGCAAGACTCAGTGAAAGGGACTAAaactttacaaaattaaaattcattgtttCACACCATACAAAGA

a score=47484
s chr3           150694359 4605 + 160039680 [encoded data, 4901 characters]
s HiC_scaffold_1 137302119 4235 + 233722169 [encoded data, 4901 characters]

a score=50350
s chr3           150704358 4488 + 160039680 [encoded data, 5223 characters]
s HiC_scaffold_1 137310306 4921 + 233722169 [encoded data, 5223 characters]

a score=7234
s chr3           150706824 279 + 160039680 TTGGTTTGATAACACTGTTAACTGTGCATATTTTCTGCTTATGTTTTATGTGCATTGGTGGAGAAGTGA----GAGAGCAAGAAACACTTTAGGACTCGCTTCTGCTATGGCTTGTTTGTATGCCTGTATGCCACCCTAGATATAAAGAACAATCTAATTTGTGCAAATCTTTAGAGAAGCTCTAAGAACATTTTAGTCTGTGCCCCAAGCAAATATTAGCAATTTCTCTTT-TCAGGAGCTGTGAAACTTATAGTCCATCAAATAGATTAAGGGATAAAAGAA
s HiC_scaffold_1 137313228 276 + 233722169 ttgataaaatagcATTCCTGTCTGCACAGATTTCATATTCAGATGTTATCTGTATTAATGAAGAAGAGGTGTTAAGATACAAAAGAAGTTTGAGTCTCTTTCCTGTTATGGCTTAGTTATATGCA--------GTGCTAGATAGGAAGCACAACCTAAATTTTTCAGATATGTAGAAAAGCTTAAAGACCTATCTGGTCTTGGCCTGAAGTAAATGATAGTGATCCAAGTTTCTCAAGCTTTGTGGAGCTCATTCTTCACCAaatataacaaataataaaaaga

a score=41790
s chr3           150735831 1434 + 160039680 aatatggtgtgtaaaaagtaaattaaatataaaaGTAAATTTAAAAAAGAAAAAGAAAATAC----TAAAAAGAAAAAAATCCATTCATAAAGCCAACATTAAATTCTCTGCTTCTAAGGAAAGTTACGTGAAGGGCTTAGAATTAATTATTCATTGCAGGGTTACTAGAAAATACTAA-GATGATTTTTTTCATTTTTTAATTTTTTGTGGTCTTACTACTATTGAAACACCAAAGTGAAAGTTCTCTCTACATTAAAGCCATATACA----------CTTAAAACTATATTCATTTCAAGAAATCTAGGGCACGCATATTTATATTACTTTACATGAAAAGGGAACATTGATTAACATAAATTTGCATCTACTGCTTAAGTATGTAAAACTAATTAATACAACAGAAAACTGTGTATGCAAGATTCACATTGAAGGTCATGCAAAGAACTGAGGTCAACCAAGTCTTGCAAATGAGGAAATCTAACTTCACCAGGGTACTTCCCCCAAAGCAAGTATCATTTTCTTAATGCTTTGCCACCAGACAAAGGTTTCCAAATTGTCTACTCTGCAAAAACAAGTGTCTGTTTCTCTCACGTTAAAGTAAGGGCC--TCGAAAATTCCCAGTGTTCCTCCGAGCACTCTTCTCACAGATCTTCTTCCCTTGAGCCAGTGT-TTAGATGACCT-CCTGTGG-------------CACCAAA----CAAGTAACTAAGTTTGTGTTAACAGACATCCATTACTCAAAGAATGGCAAAAAATTTTCAAAGAAGGATTTGTAAAAACCCTTCACCCTGCTTTTAAATTTTCAGGGCTTAACATGTTTATAAAACAGCCTAGaaaaaaaaaaacatttctttttatttttttaataagttaatctatgaaatttttaaaaaGTGCAACATCCGAGACTATATTATATTTTCATTTTCC-ATTTACAAGGGAAGTTTGCTGAGAATTCTCAGTAAGCACAAACCCATGTAAACTGGTTTCTTGGGCTGCACTGACTTACAAGCCTATGATCTACCTGTGATGAGGAACAGCTGAGTGGGTCATTGGCTGATAAACATATTTCCAGGGATTTTCCTTTTCATTATCTACTGAAATTCTCA-----TAACAGGTTGTTCTTACAAAGTCAAGTCCTGAGTTGGAGCATTTTCCCCCCA----AAATTATA-TTTCTTGTGATATAACTCATCTTATG----TATCTTAGCTCTTGAAAGCCCTGGGTCATGCCCCCCCCCCCCAACAACAACAACAACACCCTGCTAAATATTGAGATAAAAAGTAAGTGTACTCACGCCGCCAACTTTATGAGAACATAGGTTTTCAGCTCTGTTAAATGCTAAGACCATCAAGATTCTTAACAGGAATATTACTTTTGCTAAAAGGT------ATCTTTTAAAACATGTGTTACTATTTTTGGACCTAGAATTTAACAAGTTTTTGCCTTTACTTATTTA
s HiC_scaffold_1 137324566 1394 + 233722169 AATCTGGTGAG--AAAGATGAACAAAGccagttaataaaataaaaacagagcatcAAATTACAGCCTAAGACTGAGAAAATATAGACTGAAAGA---------------TGTTTCATATGTAAATTAC-TGAAGGGTCTAGAATTAGT----CAATATGGGATTATTTAAAAGTACTAAAGGTGGTTTTCCTC---------------------TCAATATtattgaaaaagcaaaatgatagttcctttgaaactaaaaacaaaagcaaaaacacaacCTTGAAGCAGTATTACTTTCAAGGAATCTGGGGCACGCATATTTATAT-----------AGAAAAGAATATCAATTTACATAAATTTGCATCTAATGCTTAAGTATGTAAAACTAATTAATACAACTGAAAATGATGTACTCCAGATTCACATTTAAGGCCATTCACAACACTGAGGTCAAGCAAGTTTGCCACATTAGGAAATGTGGCTTTACCAGAGTATTTCTCCCAGAACTGGGATCATTTTCTAAGTGCTTTGCCCGAAGACAAAGGCTTTCAAGTTGATGACTCTATAAAAACAAATG--CATTATCCTGGCATTAAAGTTAGAGCCCTCTGTACATTTTCAGTGCGCTTTGAACTGTGGTTCTCATTGACTCTCTTGTCTTGGCCGGGTATATTACACTATCTGTCTGTAGCTGAGGAGGCTATCACTAGAGCTGCCATAAACTGATTTTGTGATAGGAAACATTTAGTGCTCTAAAAATGGCAAACAACCTT--AAGAAGGGCGTTTAAAAACTGTCAGCTCTGCTTTTAAATGTTAGTAGTTTAAGCTGTTTATAAAGGAGCCTGAAATaagaaag--------ttttctgttttaagtAAGATAACCTAT-AAAGATTTAAAAGGTGCAACATTTTGGGC---ATTATATTTTCTCTCCCTGAGTTATGAGGCAACTTTAATAAAAAGTGTCTGTAATCTCAAATCCATTTAAAGTTGCTTCCTAGGATATACTGATTTATAGAGC-ATGATCTGCCTGTGATGGATCATGGCCGATCAGGTCATTTGCTGATAAACATATTTCAGAggattttcctttccatttcctgtTGAAATTCTTATACTGTAATGGCATGATCTTACAGAGTTTAGT-CTGACTCCTAAC-TTTTCTTTCTACAAGGAATtctattttctagaaatatagtTCATCCTGTAGAGCTAACTTTGCTATTTAATGTCCTGGCTCCTG----------TCAACTAAAG-----------TGCTCAATATGGAGATAAAAAGTGCATTTAATCAAGTAGGCAACTTTTTGAGCTTATGGGTTTTGAGCTTGATTGGATCTTAAGACCATCAAATCATTTGGCAAAAACTTTCTCTTAGAGAATAAGTTTTGTGTTCTTCCCCAACAT---CATCCATTTCTTGACCTAGGACATCACAGGaagtttgctgtattttttta

a score=20609
s chr3           150751790 510 + 160039680 GTAAAACTATCCCCATACCTTTGGTTTTTGCATGTCTGACTGCTCAACTCAATGAGGGGA-ATTTTATTATTAGAGAAAGCTGTGTATCAGTCTGGTCACAAAGATTTCCTCTCTATGTATGTTTCCAGGGACTTGTTAAAACAGACCCTGGCTGCTAATCTTTAGACTATAAAGTAAGTTTCTCATTAATTCTGCCCTTTTAGCAGCTGACAGGCAATTTGACTGCTTGGAAAACACAGTGGGTTTTTATGACCCACACGTAAGTAACCATA---ACCAGTCATATGTAAAGT--GAAAGCACAAATTGATGGCACTAAAGTAATTTTAGCCAACAATATTACAGGTTATATTTTCAA--TACAA--TTCCCTTTAAGGCCTCAACGCTATCTGAAGGAGATGCTCTCGGTTC--ACTT----CTGTGATGCTTGCAAGTTTACTCACATCATCCTTGTTCTTGTTTAAGATGTTACTTTCTCCTTACTAATGGTTTCttttttattg-gttattttatttattta
s HiC_scaffold_1 137333960 522 + 233722169 GCAGGACTGTTGCTATGTCCTTGGTTTTTATCTACCTGACTGTTCACCTAAAtgggggaacattttagagaTGAGGCAGGCTGT---TAAAGCTGGCCACAAAGAA--CCCCACCACCTATGTTTCCTGGGACTTGTTAAAACAGACCCCAGCCGCTTCTCTTCAGACTATAAAGTGTGTCTCTCGTTAATTCTGGCCTGTTAGCTGCTGACAGGCAATTCAGCTGCTTGGAAAACACACTGTGTTTTTATGACCCACACATAAGTAATCATAACCACCAGCCATATGTAAAACCACAAAGCATAAATTGATAGAACTAATACAATTTTAACTAACAATATTAgagcttatattttaaaactacaaagTCCCTTTTATTGCTTCAAATCTGTCCTGTATCAGTGTTCCAGGTTCAAACTTTCAGTTGAAATGCacataattttacaaaaattgtCCATTGTCTCCTTCTCAACTTTTATCTCTTCTTATATATAATTTACTTTTGATAATGctatattatatattta

a score=26473
s chr3           150764445 1844 + 160039680 TTTTTATTCATCGATTAAATACTCTTTATTTGCTTTTTTTTCAATCTGTGCATATAAATAGTGATACTAT--------------ACTTACAtcttttggttga--taagttttgttttctcctgggtaaagtagaaatgaagaatcatacattatgtgtgtttgaaacttcataaaacatagataaatcagttttcaaagttttagcagcatttttaaatacttattagcaatgtatatgagttccagttgATATTGCATACATTATGATTAT--TTAGCACAATCTATAACTGTATATTTTGTGATTGTATTTCAGTTTCTTAAAGCAGAA-----TAGCCT-TTTATTTAACCTAGTTAAGTAACCGACAC-AAGGCATATGCACAAGTCTAATAGAGAATGAGCTAAACTCTGCATTTTGAATTTGTACCTG------------CTTTAAATTTAAAAGAAATGTAACATTT----TGGGCTAGAGATATTTCATA---GTTGTTA--TGTGATC----AAGTCAAATCCTGCATAGAGAGCATGTA----TCAGGCCTTCCCTGTTTTTACGTGCCAAGACGAAGATGCTGAAACATGCAATCAGTGTACAGA-----GATCTACTTGTGCTGTTGTGCTGTTTTCATATGGCCAAGCAATCCTGCACATGAAAGTCACCAAAAACAACAGAGATGTCAATCTCAAAAACTGTAAAT---GGTAAATATTTAGAAACAAT----AAATTCAATATAGATGGCTCTTCATTAAGGTACTTTGCTATGATTATGAATCTGTCATTTTGGGTTTATTTTTTCCCCTAAGAACAGTAATAAATCCTCTAATTGAACTACATTTACAATAAATTAAAATACAGGGCATGTACAAAGAAAAGCTAAAACATAATTTCAGAACCATTTCTACACTGAAAACCTTTTTACCTCAGCTGCCTTTTTCCCCCCTGGGGGAGGGGGAAAACATGTTTTTCTTAAGGGAAAAA-AGAACAAACGTTTATTGAAGAAAATT-------ACATA----TATATATCCGTAGTAACACAAAGCAATTCAAGAAGTGACTGACTGGATAAAAATAGCCATGATTATCTGCTTAGTCACAAGACAGAA--TGAGGTAAGTATTA----AACACGTGTTTGAATCATTGGTACATGGGGAGAATTTTTCTATCATTGATAACATTGTGAAGAGCTGATGTGCTTAAGTACTAGGCAGGACA-TGATGTT----GCATCATTCCTACAAGTATCTCATGATTGTCAGCA-CCTCTCAATATGTTAATTA-AATCA-------AACAAGAAAAGAGG-TGGTTCTTAGAATAGTGAAAAGCTTTTATCTTACATCCCTTTATTTGAAATCATTTACTAATGGGTGTGAATTCATGGCTTAAAATTTGG--CTTACAAAAGGAAAAGATGCCAATGTACATTGTATCTTG----TTTTTTGCATGTGTGTA-ATATGGGCTGCTTTTCTATCCAGTGACTTTTAAGTAAAGACTTATTTTATTAATACTTTTACA-TGTTAACACAAA----------AGTTCAAAGAATTTGAGTGTGTGGTTCAAAAGATGGCAGATTGATAGAGCTATGACA---------TATAAAACACTGTAAAAGTTTCCAACCATGTAGGACTTGGTAATTTGACAACCTGAGGGTTACATATATAACATA-AATAAGATAATTTGTACCCA-ATATTTTGCATCA----CACAAGAAT----AGAGGGTATATACGTATTTGAGGATTCATTTCTTACTTGTATTTCTTCT-------GTGACACTCCTTTTTATATCATTGATAGGAAGAAGTCATTAGTTAAAAACCAGTGATAGTATATTGTCCGAATGTCTGGCACCAGGTGTATTCTAATTTATATTTTAACTCAATGGAATGTTACAAATTCACAATGAGAACTGTATGGTTGGTGCGA
s HiC_scaffold_1 137351785 1858 + 233722169 TTTCCATTCACAAATTGGAGAATAATTa---gattttttcccaatatttGCATATTATTAGCAAAGTTGTTAGGAATTTTATTCATGTATCTCTTTTTGTGGAAATAAGCCTT-CATTCTCTTGGGTAAATTAGGATTGATGGGTCGTATATTATGCATT-----AGATTCATAGAAGTTTGCAAACT---TTCTCCAAGTTGTTGCA-CTGTTTTACACTCTTATCAACAATATAAAAGAGCTCCACTTGAGATTGTAtcctttttcattaaaattagcaCAAGCTATTCTTATACAATTTATGAATGTGGTTAAACTTcctaaagaaaaaacaattggtctatttttttaaatttatt------ctcacACTAATAGATATACACCAG------AGGTACAGCATTAAAAtctatatatttacttttaaactgATGTGAGaatgtttctaaattttaaa---atatagtatttaaaatataataaaaatctcTTAGGTGTGCTGTTAGGTGTGATTGGAAAAGCCAGCTCTAACCCAGATGTCTTTTCCAACTCAAGCTTG---TGGCTTTGCTTACTAATCTAAAGGTACCTGGGTATGCATTTGGGGTACAGaatattgatttgtttttcctattttgttttcttcttgctttttag-AATTCCAagtataaagataaataaaatcaccAGAGGTGTAGATACCAAATTTTTCAGGTCTTTGTGaatatgtagaaatatttgccaGATAAAATGTATA----------------------GTAATGCTGAAGACTATACCACCTAAGGT--GACAttttaccagaaaaaaacaataaattcagcAACTGAATAGTATCTATTTTACAC-AGAATATAGG--ATGTATGTAAAATAGCTAAGTAGTAATTCTGGGACCATCAGTCCACTGAAATCCTCTTTCATTAAACTGTCTTATTTCTAC--------------AAACTAATTCTTCTTAGGGGAAAAACAGAGCAAATGTTTATTGAAGAGAATTGTGTTTTACATGATTTTTTATACCCATGGCCACACAGAACAATTCGAGAAGTGACTGACTGAATAAAAATGGCCATGATTATCTGCTTAGTCACAGGACAGAGATAGAATTAGACACTACAGGAAAATGTGTTTGAGGAGATGAAGCATTCTAAGAATGTTTGAATCATTAATAATGCTATCAGGTGCTACTTTA-TTAAGCATGTGGCATGACATTGCTATTACTCACATTATTTCTTCTAGTACCATGAAAGTTTCAACGTTCTCTGGGAGAATTAACTATAATCAGTTTGCTGACGTATATAAAGGCCACTTCTTGAGATGatgcaaaacttttttttctggCCCCTTACTCTGAAATC----TCTAATAGGCATGAATTCATGACTT--AATTTGATCCCcacacaaaggaaataaac---tattcaaagaattttaacatttttttgaaT-TGTGTATGTGTTCACTACTTTTTGGATTAATAA-TTTTAAGAGAATTGTGATTT------TACTTGTACACTATTaacataaaaatgttcagcaaTCTAAATAATTTTAGTATAT---------------ATACTGACACAGTTAAAATGGTATTATTTTACAGAACA-TatgaatttctcaaattttgaaaATCACTAGTAGTTGATAACC----GGTGACTTTTATTATATGCAATGAAAAATTGTAGATTCATTTGTTAAGCATCATGAGTGTAAGTCtatggagaggaaggagaag-attCAAGGACTAATTCcttaactgctttttttttttccttaatgaaaTTAC-CCTTGCATCAT---taggaataagaaatgaaaaaggaatcaCTG--GATATATTGaac-----tttgtaa------atatttcagtTCATATGTAAACCCCATGGCATATtataatttcaaagtaaaaatggaaGGGCAGATACaa

a score=28703
s chr3           150768388 1477 + 160039680 TACTAAGTGCCTATA-ATTTTATAGCTTCAAAATCCTGATCCAAGATGGATATCAGAGGGCCAGTTGTTACATGTGCATCATAGCTAAAGTCAAGGTTGGGAGGACAAGCCCTCAACTGTGGTGACCAAGTCCTAGAAATATATCAAG---TTATGATTAAACGC-ATTAGTTAGAATAAGTGTGTTGACTATTCAGTGCTAA--AAGGGAAGTAGATTCTGTTTTTGGTTTATGTTTTCCTGGTTCAGTTTAACATAAGGGATTCTCTGACTGTGGAAGGAATGCAAGAGACTATCCTCTGGAATACAATATATGCTTATT-------AACAAAAGGCT---GCTAAATTGACATGACATTCCGTAAGAAAATTGAAGTGCATTATTAGTTTATTAATTAAAACATACTTCAATAGGGG----CTAAGATACA-TTGTATATGTGTGGCATTTTCAAAAAGTATTTATGATTTAAATTAAAGAAAAT---AAACTGGTTCAAGCTCAGTCCTGGAAGCCATTTGTGCATG---GAGGAATTG--AGCAAGAAG----------GGCCTCCAGGGTGAGACAGAAAGAGAGG------TCAATGCTTTGCTGACGAAAGTAGAGAGAGTTTTAGAAGGTACAATTGGAAGCCTGTATTGGACAAGAA-TGATTAATACCTCCTATGGGCAAGTCTAAAAA----TTT---TGAATGAAGGTAT---------------ATGACTAATTCAAAGATAATCCCAGATAGTCA--------CCAGCAT-----------------------------------AATAGAAGTCAGGGTTAGTTTAGGTAGAAAATGGGCAAGATTTGTAAGACAGTAAGA-----CCGAGTAAGTATGTCTCTAAGCCAAATCAAA--GTGTGGTCCTAATTGATGTAAATCACAGAAGGCCATATAAGG-----AATGCTTTGTTGAGCTCTTGAATGATAATTACATATTAATTAATGGGGACACTTA---AGACTTTTAACTTGAATCTTTTGCTTGGAATTTGCTCAACTTTGAAGGAATATGCTTTCTTTCTAGTCCTAGTAAAAAGTATATAAAAAAGGTTTATTTTACAAAACTGCAATTGGCTTCATACTGGCTCTGTTATTGCTTAATTATGGATTTCTCAAAAAGATTTTCCTCTCCTTTAAAAATATTGCTGTCAGAGACAAATTCTTAGCTGGTTTCTGAATATAATGTTGGCTTCCCAAGCAGAAAGCTAGTTACATGAAATGCTGAAAATTCACCCCTTGCTTTTTCAGTGAAACTATAAATAACAGCTATATTGTGCCTTGGGAAAACAAGTGCAGGCTCAAAACTTTATTAAAAGTTATTTTTTTCCCTTGAACTGCTGCGTAAGTCACCTATAGGCTAAACCTCATAAGTTATGTTTTATCCTTAGCAGACAAAGGGATAGGTAACTGGATTACCCCGCTGTATACTTGTACCCGAAATATCAACATACATATTTGAAGATAATCAAGGGAAACATATATGAGAGGAAG-AGATGGGTGATAAGTCCATTGTTTCTAATTGATATTGTTAAAGATCTAACT
s HiC_scaffold_1 137362052 1494 + 233722169 TATTAGTTGGCTGTACATTCTGTAGCTTTCAATTCATTATCCATATTCAGCAGTGGAACTCTAAATGTTATGTGCACATTATAACCAGCATCA-----TGGAGGAAAAGTTGTC--CTTTGAAGAAAGGTTCTTAGAAACATGTCAAGCATTTCTAACTAACTCCTGTTGGTCTGAACAAGTACTTGG----TTCACATCTAACTAAAAGACTGAGGCATGACTTTAAGTTGACA-----AAGGTACA--TAAAGACAAGTGATTATCTTgttatggaaa-aataaaggaagcg--TGTGTAGAGGA-AGTTTTTGCATatctaggcaaaaaaaaaaactcttactGAATT----------------------TTGGAAAGTATCCTTG--TGACTTTTGAAACTACATTTT--TAGGGgaatactaaaataaaactatacag-------aTTTTAGAGAAGGATT---GATT-------GGGAAAATGGGAAACTCCTTT----TCAGCTAAGGAAAACATTTTcctatgagagaaaaattagaaacaaaaagttCTAGAAAAGGCTTCCATGataagagaaagggagaggaggagctgtATGTTTTTTAAGAGTAGATGGCTAGAGTT--AGGAGGTAGAGTTGTGACTTGGTAGAGAATAACAGCTGAGAAGTATCTCCTGTAGGTAGGCTGGAAAAGATGTTTGTATAAACTAAGGCATGTAGGAAGGAGGAGAATGATTGATTGCGAGAGTCTAACGGAGAGTCAGTGCTGTCTCAGTTTGACTGAAAGACAAGTTATATACGGTAAGTGGGGGGAAGAAAAGTCAGAG--AGTCCAGGAGGTCAAAGAATAGTGTTTGAAATAGAGTCAAAAGGGTTGGGTTAAGTATCTctctaaacaaaattaaatgatggGGCCTTTTCTGA---ATATCCCAG---GCTCTGCTGGGGTAAAATTGCTTCATCTGGTATTTGAAAGAGATTGAGATAGCCATTAACAAAGTAATTTATTGAAGATTCCACCTGGCTTGGGTTGCCTGGATATTGCACAACT--------ATAAGCTCTCTTAGTAGTCACagtaaaagc------------atttattttagagAACTGCAATTGGCTTCACACTAGTTCTGTTACTGtttaattactaatttc-aaaaaagatatttctctccttttaaaattttgctgtcAGAGACAAATTTTTAGCTGGTGTTAGAATATAATGTTGACTTCTCAAGCAGAAAACTGGTTGCATGAAATGCTGAAAATTCACCAGTAG-TTTTCCAATAGAACTATAAATAACAGCTATATTGTGCCTTAGGAGAACAAGTACAGGATCAAAACtttattaaaagtta-ttttttcccttgaaCTGTTGTGTAAGTTATATATAGGA-AAAACTCATAAGTTATGTTTTATCCTGAGCAGACAGAGAATAAGGGAATAGGTTTGTGC----ATGTATCCATTACAAAAATAT-AACATGTATATTTAGGGATAAGAAGAAAACACTCCTCGGGTAGAAAACAAGTGCACAGTAGGACAA---TTTCTAAGTGATAAGGTTAAGCATCCACCT

a score=36939
s chr3           150776696 1478 + 160039680 CTTGAAAATTATGCTTCCTCTGTGAAAAGGACTGTTACTAACAAGGAAAGAAAGCTTGAAAAATCTTACTTAATTTGACTGTCTTTAAAGTGCTCAGCAAAATCTAATCATATTTTGCTCAGGTCATAATTTTACGCTAAGGTTCATTTGTATCTGTTATCCCCGAAGACAACATTATGGTTGATTTTTATTGTTTTATAATT-TACATTAAAAACACATTGTTTTACAGCATTCAAAAAATGATG--AGATACACTTATACGGCAATGACAGTCTCTTCCACATGGAAGCTTACTTACACCAGATTTGGAAA-----ATAGtattatataatatattttaattGTCTTATTTATCTAACCTAAAATTATGACATGATTACAATCTAATTGAGAACCTTACACACAAAAGTCTTGCAGCTCTTGCATGCAGCATGCTGAGAC-TGTGAAGAATAAAGTTTATTTGTTTTTCAAGCTGTAGTTT--TTAGC--AAGCTACTAATTGAAATGAAATCAAGAAATAGCATCAAATCCACACACAACACACGTCCTAAAATAGGAAAGAGGTGGAGTGAGCACGAGTCTTCCTGAACCCC-GTAAAATGCAAATAAGATTGATTTCATCTAAGATTTTAACAGGCAAG-TTTTTCATCGAAGTTCAATTACAAGATTGTCATTTCTCTACACTGCATATTGTATTTACAAAATGAACATTATGAATATTTCAAATAAAACATAAACAGTAACATAATTTATATGCAACATTGTATTTTACTTGCAAAACTGTCAG--TTTCAGTACAGCTATGAAATATACCTGATGAATATCTTTGTATTATTTAAAGTTTATCATAAAAATGAGTGATGTTTATTTGATTATATTTTAGTGTGAAGACAAATGAATAATAAACCATAATTTTTATGCATCATGGAATCAAATCTACAACAAACTTTAGTTCTTACCCTAAATTGCTTGCAAGTGTATGAAATATTGATTTCAGTTGAATACATGTATTTTTAAATACAATATACATTTTGCATCTATTCATTTA--TTCAACTTGAACGCATTTTAAAAACTGTCAGAGTCCAGGTATAAGAATTTGCTCAAGTGCACTTGACTCAATGTGGGTCTAAAGGGAA------GGAGAATAGAAACCAGAAGA--GACTACATTGGCCCTCACCCGAACAGTCACATACTGGTCAAATG---CAGCACTAAGGCTTTCCTTGCAAAA--------------------GTGACTCATTATTGTGGTAGATACCTTTAAATTACAGAGACCATATAACTGGCAAGTGAAACTGTGAGAATGCTCAGAGCATTTACTGCAAAAGCTCTCAAGGCTGTGTTCTGGAACACCAGGATAAGTAGGGTG--------GGCCGCTTCAAACATCAATGTGTCAAATGTTGTGATGTGATGTTTATGCTTATGAATATCAGCAGTCATAGCATCTA---AGTGTAGACAGAGCAAGTATCCATGTAC-AAACTATCCCCAGCAAAGCTCAAAGA
s HiC_scaffold_1 137367984 1415 + 233722169 CCTGAAATTCATACTACTTCACTGA---GAATCGTTAATGGCAAagaaaaatgttatagaaaatcTTATTTAATTTGGTTTCCTTT-----------Caatgtctaat-----ttttttctaatcataGTTTT-TTCCAAGGTTCTTTTTAGTCTATTATCACAAAA---------------------TGTTGATTTATGAttatacttt-------cattattttatagtgTT-----ATTAATGTCAGACACATTTATTTAGCAAtgaca---tattaaaaattatagctgaAA-ACATCAGTTCTGAAAACatcaaagattttataaaatatgtaacaatCAATTTATTAAT--AA--TACAACTTTAATATA--TACAAcctaataaaaattatagtatgCATATTTATCTGAGCATATTCATG--GTATGTTGAAGTATGCAAAGGGAAAAGGATATTTGTTTATAATTGTGCTATTCCATTAACCCAGATTATTGATTAAATCAAAATCAAGTAATGACAGCAACTTCAAATa--acaaatttctcaaaataataaagaagataagCAAGTA--AGTCTTCCAAACCTCCAGTAAAAGTCAGAGAAGATTGATTTCACCTAAAATTTTCAGAGGCAAGATTTTTCATAGAACTTCAATTACAATATTGTCATTTTCTTGTACTGCATATTATATTTACaaaatgaatattataaatatttcaaataaagcaTAAGCAGTAATGTAATTTATATGCATCATTGTATTTTACTTGCAAAACTGTCAAATTTTCAGTACTGGTATGAAATACATGTGATAAATATCCCTGCATTATTTAAAGTTTACGGTAGAAACGAATGAtgtttatttgattatattttagtgctaaaatgaatgaatattaaaCCAAAATTTTTA--CATAAGACAGTCAAATCT-CAGAAAACTTTAGATCTTGTAGCAAATTGCCTCTACCAGTACAAAATGCTGAATCCAGATCAAACCATGAGTTTTTAAgtactacatttattttttatctacttatttatttttaatttgaatgt-ttttaaaagctgCCAGCGCCTAGAAAT-------------AGTATTCTTTCCTTAACCAAACTCTATTGGGAATATAGTGGATATGAAAAACTGTAAGAATGAAAACA---------agcttaaaacttttttaaaggtcATATGATacagcatt----tttttcttaaaagaagttAGGTTAATTGGGTCTGGTAGTTCATGCTCatgataaa-aatttgaaattacagATGCAA---AAATGGTAAATGAACTAGAAATAATGATAAG---CTTTATTATAA-------TAAGCCTGTATTGTGTAC-------ATAACTGTGGAGAACTGTATGACCTTCTcaaatgcagatttttt---tttcctgaggtgaTTCTTATAGTCATAAATA--GACTATTATATCATCAAACTAATGTAATCAGAGCAACTATCTatgctcaaaaatattttcacaagagCTGAGAAA

a score=42744
s chr3           150782386 1514 + 160039680 GGTACTCATTAAATCTTCATTTTCTTCTTCTTTCCCCTGGGGCTGGTAGACACATAAAACTTTTACC-TACATAAGAAAAT-TTGGAACGTATTTATGCTTTAAGTCTGTGCTTCATC---CAACATAGGATGCATACAATATTCTATAACGGAGAAACTTTCAAAATATTCTTAGAAAAGATATTTCAACACAAATCTGaaaatttttaaaagtatattaag-----------aatttattatat------GACATATTCCCTTGTAAATACATATGGATGAAGGCACTTGACAT-AAGAGAACTCATTTCTCCAGGAGAAGCAGCTTCCTTGAAGGGTGCTCCGGATGTGGGTGACAGCCTCAGGACTCCCAAAACATACTGGTGACCTGGATGACGGCTTAGGAACTGAGATGTTAAATTCCTGCTAATGGCCAAAAATTATTTAGGTTAGCAAAAACCTTGCACCATTATGAGTAAATCcagaaggatctaattaacctaggtgattgggtaataggatgatagattaaatttattgtagataagtgcaaagtaacacatatcgggaaacctaatttaaacttcccatgaacactga-gggttcggaattacct-gagtctctgaggtaaaacatttagaagtcattataaaTAGTTCAATGAGAAAGCTATTTAGTATTCAAGAGC------------CAATA-AGTACTTGTAAATATTAACCTTAGTATGTAAAATAATATGAAAAGTAACTCTATGTAGTTATGTGGACCAATGGT-------TAGAGTATAGGAGGTGAT-ATTTTATGACCTTTGTCAGGAAACCCTAAACAATAATTGACAATGTATTCAATTGTTACGTTATAATCAAGCAAATAAATTTGTAGAGTCATT----TATTGAATAGGAGCAGTAAATTCTGGTCTAACAG---GGACAACAAATGTAACGAATGGGTCAGCAAAAACCTCTCTTTGAAGATTCCTTTCAAT-------AAGCATGTG---GTTAAATGGCAC-AGGAAAAATGAGATCTACATTTT-aaagcagtacctttaatatgactc-agaatccatctgttttcaccaatgacgagaatcagtgaagcaggtagctcagcaagatttccagggatcagatatttatacgactatgaataacatctgc---------agctacaccagGGTT--GGCTGCACGACATGAGGCAATCCTTTTACTCCAGAGGTTAGAGAAACCACCTAGGAGATGAAGGAACATTTTATTTCTGTGCT--------ATTAATAAATGATTAGAAGC-AACTGTAACAATTATTTA----AAGTTCTTTAGGATATTCTTCAATGTGTA--TATATTTTTAAC-ATATCTGGGTGATGATATGTATTATTTTAAGTAAAATTGCCAGTGAACTTGAGGAAATACACTATAATTTAT-AGGCATGTCTGACATATGATGATAGAAGTAAACTAAAGAATGATAAATGTTAAAACTGTATTAACATTTTTGCTCTAATTCACTCGGTATATAATTCTTTAGGGAGCCTTTAGTTTGTTCATGAAAGTGTAGAATAATAAAGGTATAA
s HiC_scaffold_1 137381303 1557 + 233722169 GATACTCAttaattcttcatttcttcttccctttccctcagAACTGTAAGCATATGAGAAATTTATCATTTGTAAAAAAATCTTAGAGCTTATgcactcttt---ttttaatttaatttctcaaCATAG----CATTCAA--------AATGGGCAAACTTTCAAAATATGCCctagaaatatttttacatacaaATTTGAAATTCCCTAAGA-TATGCTGAAGGCTCACATAAAACTCATAGAATTTTAGGGATATACTTTCtcatacataaaaatgaattgaGCTATTTGAAATGAAGAGTGCCTATTTCCCCAGAGAAACCAGTGTCACAGCAGGGTGCTCAAGAAGCAGAAAGCAGACTGAGGGCTGTTAAAAC-----TATGGTCTGGAGGGTGTAGAAGATAGTGAGGTGTTAAATTTCTGCTGATCACCAAAAATT---TAGGTTATTGAAAAACATGCAACATTATGAG-GAATCCAGaaggatctaattaaaccgggtGATTGGGCAATGTGATGATAGATTAAATTTAGTGCAGATAAGTGCAAGGTAATGCATATTAGGAAACATAATTTAAACTTTCCATGTACACTGATGGGTTCTGAATTAGCTCGAACCTCTTAGGGAAAGCATTTAGAAGTCATTATGGATAGTTCAATGAGAAAACTGCTCAACACGCAAGAGCATTTAAAGTAGCCAACAGAACACTTGTGGGTATTAATTTGAACATGTTGAATAATATGAAAATGATTACtatgaaattacaaaaatcaatgaTACTCTCCTA----CTAAGCTGTGTTTATTTTAGATGCTTTATCAGAAAACACTAAGGAATAATTGACAGGATGCTCAATTGTTGAATTAAAAGTGAACAAATAGA-TTGTATATTTGTTAAGGAATACAATAGCAGCA--AGACACAAATTTAATAGACCGGGAAA------TAATAGATTGCTCAGCAAACATCT-TCTTTGCTCGTTCCTTTTTATTAAGCGCAAAAAGGTGAGAGGAAGATGACACTGGGAAAACTGAAATCTATGTCTTAAAAGAAATATCTTTAGCACGAATCAAAAATCAATCTGCAGTtcacagtga-aataaataataaggcAAATAGATGAGTGAGATTCTCAGAAATTAGATATTTGTATGACTCTGAATGACACTTCCAGCTAGACTAGCTACACCAGATTTCAAGCC-CACTGTATATATCAGTTCTTTTGCCTTGGGGTTCCAAGACATCATACAGGAGATCCAGGGAATTTTTTCCCCTGcttttaaatataattgataaatGACGGGAATCAAAATGGgacaattatttattttagttactttaaGA-GCCCTTCTAtgtgaaggtttattttttataataactgTGTTGCGTTATatattatgagaaataaaattgCCAAAACAGTTGTAGAAATAC-----GACTTATGAGGACTGTGGtaacaattttaattaaaaataactaaataaaaataaatgctaaaattgTGTCAGCA-TTTTGACATAGTTCATTCATTA---AAATATGTGCTGAGCCTCTAATTTGTTTTGCAAAGTATAAGatgcaaaaaatataa

a score=30276
s chr3           150788980 1969 + 160039680 TGAAGTAATAATTAAAAATCTATAATT--CTTCTAAATAAACTATCCAATTAACTACTGTATCAGTAAACAGAATTATTATTTTATTATGTTCTTTAAGATATCTAGTTT---------------TATATATGTAATATATAGCAAAAAATCACTTAG----TATAAGAACAATATATCTCTTCATTGCAGACTTCTTATTTTTATGATTATTTGTTTTGCTTTTTTGAGACAAACCTACCATGTCATTGAATTTGTGTTCTTTGGCTTCAGCCTTCTGACTCCTGGCTTGTAGAAATATATGCCTAGGCTCAGCTTGTCTCTACAGTTTTGCCTTCTTATTACCACTCTGTTGCCAAAACATCTGAGAAACTGTCAATGAACTGACAGTGTTTATAAGTTCAGAATTATTTCTCTCTTCACAACTTCAGAAATTTGTATTCATATTTGAGCTACCTGATGATTCCCTGACTCATCTGACAGTCACAGTTTCTTTCGTTAAACTTTATTTTCTTTATTTTTCTGAGCTCCACCTTTGCCTTGGTTGGAAGTTCTCATGCACAGGATATTTGTACTTCTA-----------TTCTCAACCATCTTTACTTACATATACT-------TCT-----------------TCTTCTCCCTCCTCACTCCTCTCCCTCTTCTTTGAGGAAAC------------------------------CAGAGATACAATGCTTC----------ATTTACAAGTTTAA--------------------------CAA----AGATTAATAATTGCCACGC----------AATCCTTTACTTGATTGTCACTGGTTTGGTTTGTTTGTAAATTAATTTATTCAAAAGAGAATATTTGCTTGACCCTT-TCAAATCAGGTCTTTCC-CATGCCTTT-------------TTGCTTTTCTTCACACCTTTGAATA----TTATAACTCTACCATGCATGTTCAGCCCCTCCCCTCTGCAGACAGTTTTCCAAAACTGTCTTACTTCATCTGTAATGAACATG-----GGTAA---TGGGAATACcaccatcttcactgtgctcaatcacaaacaaagctagattcctttctcacctagactagaagaataacc-agtcaacaagatgctcttttcattcacatcttat----------tctttacaaagaacacaggatattcttc------taaaattta-----------------catg--taaaattgtgccatgctt--gcttgtgattttgggctgctttcatcatgaaattcaggatctttaatctggtctacaaaactataTTATGGAAAACAGGTGTTGTTCACCATATTTTTGCTCTAATCATATCTTTCTGGACATAATTGTTAGAATCAATAAATCACTTGATATGATAATCTACCCCAAATAATTCTATTGACCTAAATGCCTCTTTTATCTTCCTCACTTCAGGAAATTTGAAAAGGATAACAATTTTGATATTCAAAGTCACCATAAGACAATGCTGTGTAGCCATAGATTTTAATATTCTAGACG-AGGGCCTCAGAGCAAAAGCTGAACAAGCTCCTCACTCACAGGAATATGTCATTGCAAAAACTGAAAGGACAAATTAAA--TTTGTTGACTCTTTAGTTCTTCCTTTTAGCATCTGAATCAATGATGTGATTCTAAGTACTGAAGACCCCAGAGCAATCTCACCCCAAAGTCCCTTTTAGAAACCAAGACA-TAGCAAACAGAGATAAGAGACCTCTATGAAAGATTACCTATAGCTATGGCCAGCTGCCACTTGGCAGGACATTACAGCATGCATGGGGGATTAAACTCTATAAACTCGACTGAATCGAATCAGCTCTCTTAATGGGCCAGAAAATCAACCAGTCTGGGTGAAAAATTCACTTGAAATGGTTGACTGGCAGTAGTTGTGGAAGCCAAGGATATCTGATATTTGTGGAATCCTTAAAATGTCTGAAACTGAGGGAATGGTGGAAAGAAA--CCCAAACTTCTTCTATTCTATTTTC-ATCTGAATGCCAGACA--GTCTACACATCGCC-CAAGGCTGCCAGTCAGAGAAAACTCATTGTACCTAGTCCATTTGCTAATAACATTCTTAAAA--CTCAATAATGCCTATCACTACATAAAACAA
s HiC_scaffold_1 137387982 1985 + 233722169 TGCAGTGatcataaataatttataattgtcTTCATAAAAAATCACCCACTTACTTCCT-TAACAGTGA---TAATT--TATTTCACAATATTCCAAAAGTTATTAAATTTGTCCTTATTCCTTCCTATACATATTTTTCATAG-GAAAAATCCATCAGAACTTACAAgaataatgtatctttt---tttagactc----------taattctttgcttt-------------------------------------tgttctat--CCTCA----TCTCATTCC---------AAAGTA------------------ACCTC----------CCTTCT------CATTCTATTGATAAGACTTTTCA-------TCAgtaaatttata---ttaatacattcaaaattctttctttccttctatcttAAAAACTTCTTA---ATAGTTGAGCTACCTGACACCTTCCTTACTCTTATTA-----GCATTTCCTTTTCTTGCTCTTTATGCCATCAATCTTTGACAACTCCTCCTTAGCCCTA---------TTTTAAGCATTGAATAATTTAACAGCTAGTTTCTTTACGTTCTTGgtctttttcatatatgtattttgtgtgtgtctgtgtgtgcacatgtgtgtattttctcttattctctgtctccttatttcatatatatatatatatatatatatatatatatagatgttatacatatataatttttccaatcttaatgtttaaaattttgattgtGTAAAGTTCTAAATTTCTCTTTCAAGTCCAGACTCATTCTCATAACGCTGACCCCGATAAATTTCTACCTGGTCATTCCAAAtgtaactcattttaaaattgccttttacTAAAAAGAAcacttatttttctattcttaaacCTGCTTTTTCTACaggcctttaaaatttttattttaatttttcttcaaaccTCAAAAAAGTCCCTGAAATTCAATCGTA----TTCTTTATCTCCCTTCTTAAATCA---TTCTAGTCTTATCTCCTTGCAGCTCCACTTCAAAAGTGTCCGATAAATTTGCAAATTTACACCTTTTTATTGCCTTCAGTTCCAAA----GATATGCTCATTTTTCAGCTAGATGAATGTAATAGCCTATTAAATAACCTCATATTTCTATTTGTGTCCCTTACTGCTCATCTTTCCACACAGTAATCAGAGTAATCTTCAGCTAATAGAGTGTAACTATGTTAGTGAATAACATAACTAAGACCATGTCATGCTCCCACTTAGGATTTCCTATTGCATGTAGCACAAAGTCCAAATTCCTTACTATGGTCTGTGAAACTGTAGAAACCACGATATTTGTCCTGTAGC-TATTTTTACTCTAATCAGATTTCTATGGCCTGActggttaaaaataataaatcacacacacccacaccctcacacacacac--------acacacaccctattttGATTTTTCCCATCC--------------------ACTATTCTACAAGTCAAAGCATTTCAAAGGCAA-GCTCTGCAGCTTCAGACTTTACCTTCCTTGAAACAGAGCTTACAAGTCAAACTTGAACCAGCTCTTCACTAACATGAAAGTGTCTtcatgaaaaacaaagagacaaagaaaaaatttgttGACTTTCTAGCTGTTCCTTTCAGCATTTGAATCAATGATGCAATTCCTTGAACTGCAGGCCTAAAAGCAATCTAACTCCAG------CCCTAAAAGCTAAAGCAATATCAAAGA---AGAGAAGACTTTCATGAAGGATTACCTATCACTGTGACCTTCCGCCACTTGGTAGGACAAT-CAACATGCATGGGGCATTAAACTATATAAACTCAGTTGAATTGAATCAGCTGTCTTAATGGGCCAGAAAATCAACCAGTCTGAGTGAAAAATTCACTTGAAATGGTTGACTGGCACTAGCTGAAGAAGCAA-------CTGAAATTCGTAGAAGCCTTAATATGCCCTAGACT-----AGTAGTGGAGGGAAAATCCAAAACTACCTCTTTTTCAATTTCAATCTGAGTGCTTGACATGGTCTAGACTTAGCCTTGAGGCTCTCAGACC-AAAAAGCCAATTGCAATTCTTTTGATATCTATAAATATCCTTTAAATTCTCAGTGGTATCTATCACCATGTAAGTCAA

a score=33601
s chr3           150792036 1138 + 160039680 TACCCAGACACTCCCATACCCTTATTTAGAAGAAATAAATATCATCAAGTCATAATATCCTTGACTGATTAAGAAAGCCACTTTGTAAGTGTTTATTAAACTGTCAAGAAACTTACAGAATTTACTACA---TGATCGTTAGAATAACTTTGAGTCAGGACATATTTGA-TATGACTTAATCATACTCCCTCCAAAAGGAAATAAGG--CTTTGTGAAGGTAAATTATTTCTTCCTGGGTTGGATAT--------------------------------------------------------------GTGTTTATG---------------------------------------------GAGTGA--TCATTCAGCTGTTCCCAACCTTCATTCTGAAAAGGCCTCAGAACACTTCATGATGAATCAAGCTGTATCCTGAATAGAGTAA---AATGAACCACTTCG-TAGGAACTATGGTGTCACCACATCAGCAATTCTTATTG-AAAAGTGTGCATTTCTTATTCACATATTTCAAAGATGGTATTCCAGAGGAGTGATTTTCTCAATGTATTTTTCATCTACAAGCCTTCATTTTAAG-CCTACCACCGTGTGTGTTTTCAAGACAGCAATTATCGTTTTAAAATGTGCAGGTCTAGCTTGAGCTTCTCAGCAAGTTTCTATGCCAAAGAAAACACCAATCCTTTCCATTTACTGAGAATCAATGTTTAATCCTCCTTTTTGTTCTCATACTTATTACAAATCATAAAGAATTCTGAGTGTCAGTTTGATAACTAGAAGCTCCATGTACCATTCCTGCTCCTTATTGATCATTTTGAATTTAAAATGTTGGTGCTTTTTTTTTTCTGGAAGGCAAACCAAAATTTATATTTCACACAGAAAGGCTTTCAATATGCAATAAGA-AAAGTGTATGTTTCTAGGGATATTTCATCTTACCTATTAATATTCATTGCAATCAAATTCTCTAGTTTAATTCATGTTAGTTCCAACTTTAAGATGGGAGAAATGCT--TTAGTTTTATGTAATGAAATCACATACATGTAGAATTCATGGGTGGGTATTTGACTGTTACCTTAAATGGTAAAAATTTTCTAAAATTATCATTCTTTTTATGTTCTTTTAAAGGTATTGGAAAGTTACAGCACTTTAAAAA--TTAGATAGTTATTCTATTGTTT-----TATTTAAAAAATTCCAAATTAATTTGGAATTTTATTTCCTTTTATTTTGAAAAATTGTT
s HiC_scaffold_1 137390411 1223 + 233722169 TAACCAGAAACCATCATCTCTTCACCTGTGGAAACTAACTAAAGTCAGGTCATAATA--CAAAGCTG-TTAAGAAGGCCACAATAGAATAATCCCTGAATTCATCAAGTGACTTATAAGACTGAACATAGTATGCTACTCTAAAAAGTTCTAAATTAAGACAAATTTTACTAAGGCTTAATC---CTCAAccccaaagaaaggaaagatcttatcTAAAGTAGATGTTTTCTTCCtaaattatatattcttttttaacttttttaacggtaccacggattgaactcatgaccgcctgcttgcaaggcaggtgcttatgccactaagctaaatccccaccccctaaATTATATATTCTAAGACGGAGAGACTTCTTACAACTTCACCAGCCTTTCATTCTGAAGAAGCCTCAGAATGCTTTGCAATGAGTCAAGTCCTGTTTTGAGCACAGTGAGTAAATAGTTCATTTTGGTAGGAACTGTATTGTCACTACACCAGCAATTCTCATTTTAAACATGTGCGCTACTTATTCAGCTATTTGAAAGACGGTATTAGAGATGAGCTATTTTCTCAACTTATTTTTCATCTACAAGGCTTCATTTAAAAACCTAC----------ATGTTTAAGACAtcaattaccattttaaaatgtaccacTCTATCTTAAATTTCTCAGCAAGTTTCTcttccaaagaaaatattaatcCTTTCAATTTATTGGGAATCAATGTTTAATCCTCTTTTTTGTTATCATATTTATTACAAATCATAAAGAATTCTGAGTGTCAGTTTAAGAACTGAAAGCCCTATGTAATGCTCCTATTGCTTAttgatcattttaaattaaaaattttagcgGTCTGTAGt---tgaaaagcaaatcaaaatttatatttcacacA-AAATTCTTTCAATGTATAGTAAAATAAACTGTAtgttt-tgggaatattttttactttacattAACATTAATTAAAATGGAGATTCCTGATGAAAGTTTTGATCATTCAAATCTTCTGATGAAGGGAAATCTAGTTATTTTTACAACAT---ATGAAGAACATAAATAATGTGCTGATGGATATTTGAAAGCAgactaaaatagcaaaagtacTCAAAAAGTA----TTTTGTATTGCCCTTTTA----------AAACTCACAGCTCTTTTAAAACCTTAGCTAAAAGCCATACAattcaaaaattctcaacatcTTCCCACTTAA--------TCCATGTTCTTATATTCCTGAAAATTGTT

a score=9193
s chr3           150794832 365 + 160039680 AAATATTACATGTGTATTTGTCTGTTGAGA----GCACTTGCCAGTTGGTTTATCAATATATGCAATTAT--------ATGGAAAATTGGGTAGattttaaataaattacaattttaaatcaagttttaaaaaatttaatttCAATCTCAGTTTTAAAAACATCAT-CATATAAACTTTGTTTCTGAAGAAGTACATGTTTCTTTGAGCCATACATAAATATTTATTTTTAGAGATCTCATTTTTCATATTCTTATAATTTTGTTCATAATTCTTGTCTT---GAGGAGAAAAGTTGACCTAA-GTTTATTCAAGTAATAAATTCAT-------------GAC----ATTTAGAGATGGACAAAATAGAAAATGTAATGTAATGTGATTTTGCAGGAGT
s HiC_scaffold_1 137394043 370 + 233722169 aaatattgcatgtgtacacatgtatCAAGACATCACATTATCCAGT---------AATATGtacaattttctccttttatgcaaattttattacttttagaagaaatt-taatttaaaa----------ataaatttaatttaaat-------gtaaaaaaatcttACATGtcctctttattttgaaaaaatttcat--tTCCCTAAGCCATTCATAAGCATTTATTTCCAGAAAGCTCATCTTTCATAGTCTGATTATTTTGTTCCTAATTCTTatatcagagagaaaaaaaactggcataatgtttatttaaatagcACATTTATTCCTCTTTATATAGACAAGAATTTTGTTGTGGAAGCTATTGAAAATATGATATGATATTATTTTTCTGGGGT

a score=25994
s chr3           150799112 1686 + 160039680 CACCCAGCCAAATGTGTGGCGACAGTTTGGTTCAAGT-CAATTGAGTTCCCTAGAGGGAAATAGACTTACAGCAAGCCTCTAAGCTTCTAT----CTGAAAGAATAAATCACTTCTAAACTTAGTCAATTCCTATGGAAAAAAA------CCCCACATTTTTAAAACAGCAAACTTAAGCGTTT-----TATGTTGTTTCAACTCTTGaagaaaaaaaaagaaaaaagaaaaagaaaaaCCACCAAGAAATCTCTTGGGTAGACTTTCTT-AGTGACATTTTTAATATTGTGTAA-TCAAATACTTACTCTCCAGGGTATTATGTATCTTGTATTCTGAACTTGTGTCACATAAACAAATTGTTTTTCTAATCCATGGATATTTTT-AAACTATATGAAAAGTTCAATCTAATCTGTCTGACATCATCAAATTTTC-TTACTCAAACTTGATTTTATTTGCAAGCGAAACTAAATTTTCAAAGATATAGATTGTTACATGGATAACTAAATTATGAGCTAAAAATCAATATATTTGATATTATTATGGATAATATTTCAGAAAAATCATGTCA-CAAGCAGCCTGTATATTAATCTTGTTTTATTTGTTTTAATATTCCTATTTTAGCCTCGATAATA---TTTTATTTTAGGATAAGTTTCAAGCTGAACAGGTAATGATATGTGAAATAATTTCTCAACATAATAGT----CTTAGATTTTCCTCCTTGCTTGATATTTTTTGTTTATTGTTGGATATTGTTATGCTA-TATTTAAAATTCTCC--------ATACCAATACTTACTTATGCTAGTTTATTTTGATTTAGTCTTAGAAATGATCCTTAATAGAAAACTAAGAAGGATATGTAACTAAATTTGGTCATGAAATTGTTAT-----------TTTTGTATGCATTTTCTTCTTAAGATAACTTTATGATATAGCCATTAAC-CTGCCCTTTCAAGAACTACAAAAGAAAGTTTCACAGGCAATCTGAAGC------CACTAACAAGTGACTCAGACAACATCCTCATGCATTCAACAGTGGAAAGACTGTTTCTTCCATCAGGCAATGAAATAGGATACAATATTTACTGTGTAAATGTACTTTAT--------------------------------------------GAGAACACCTAATTATTTAGATATATTTAGTCAACATATTC--------AATCCAAACAGGCAGAAAGAAAACATAT---------------------------------------------------------------------AACAGATAAGA-------------AAAATGAAGCCATGGGTAAACAAAACAACTGGCAATAGTAAGCCAGAATGTGCTAGAGCTAAAAGCAGAACTTAGATTATTGCATTTAAAATGCAGATTGTGACCATGAATATATCAAGGTCTTGTC------CTGGATTCAGACA-TTATTCTTATCCAGAATTCTAGAGAAAGCAACACAAATT-CAAGAATTGCTTGTGTTGGGGTATAG---GATATTTGAAATAGTCATCATTATGTTCAATG----TTTATTTTATGTGATCA----TCATATTGATTT--CTCTCCAAATTTTAAAA----TACTTTAAATTCAGTAATTTAATTCCTTTTTTTGGAATATTCTTAGCCTTTGTGCCTCTGTGTCATATCAAGG--ACTATTTTTTAAGTATTTACACTGACATATTGTGGAATGACATTTATATTTTTACTTGTTTTAAAACAGAACTGCTTTTGTAAGGAATATTTTCAGGAACAACTGCACAC-TTATTGTGGTGTACTCTCATTTTCACTCCACCCTGAGTATTTTTAAATTTCTTTAACACTGTTCTCTGTA
s HiC_scaffold_1 137407942 1798 + 233722169 CACACAGTGGAACTTGGTGAGATGGTGTAATTCAGGTATAAAAGGTTTCTAGAGAAGATCAGAGATTGATAAGAAAATTCTAAACCTCTATGTATCTGAAA-AATCCACCACTTCTaaactttgtt--ttcaaataaaagtaaaatatgtcCCTACA---------CAACAAACTGAAGGTCTTCTATGTTTGTTGCTTCAATTGTTAAA-------------------------------ATGTTGAAATATCTTGGCTAGGATTTCTTTAGtgacatttttaatattaaataaatcaatTCTGTGGTCTCCAAAGCATTATATGTCTTGTGTTCAGAAATTTTGCCATATAAACAAattgttttt--aatccttttttattttttaaagtatatgaaaAGTTCAATCTAATCTGTCCAACATCATCAAATTTTTATTCCTTAACTTTGATTGTATTTGCAAGCAAAACTGAATTTCCAAAGATATGGATTGTTATTTATATAACTGGGTTTTGAACTACAAATCAATACGTTTGATATTATTATAGTTAACGTTTCAG-AAAATTGTGTCACCAACCACTACATGCATTCATCCAACTTTTTTCCTCTTAATGATCTGGTGTTAGTCTGAATATTAcgtttttattttagaattgctttt---cATAGGAGGACAAAACATGGGATATTATAACAATAAATGATAGCAAAACAGATATATTTCTggataatttaca-tttttatttcgtATTAGTTTTTATAATATTAGTATTCACAtctcttctcaaaagaaaataagttactatgtattttattttactttcatacaATCTCCAAAAAGATCATTATAGAGGGATTAAGAAGAATCATTTACTGAAGCTAATTACAAAATTATGGTTTATTAATTTCTTTCGCATATAATATGTTCTTAAAACAACTATA-AATGTA-CAGTTAACATTGCTATTTCATAGTTTAT----GAAAGTATCACAAATTTTGTGAAGTTCAATGCTGTAAAAATAGCCTGAGTC-----CCAAATACATT---CATTTGAGAACCTTTTTTTGTTACCA---AACCAATTAGTCTCCAATATTTATTATGCGCATGtgtttcatgatttttcttttttgtgtttagaGAAAAGGGAGTAGAAataatagagaataaaaaaacagcaagaaatgaCTAGTCAACAAataccagtaagaaatc---acaagttgataaattacatattgttatcttagaactacttgttcaagttataaaataagGATATTAACTTAAATTTCATTCACATATATACACAGATCATATTTTACATTTGAGAAACTAGATTTACAAAGAAACTAAGTAACTTGTTGAAGCAAGATAGTAAGAggcaaaattaaagaggaaatttagAATATTGTA-TTGAAATGCAGTCTATG--------TAGGACAAGTGCCTGGCTCCTAACTCAATTCACACATTTGTTCCTACCAACTGTTTTAGGGAAATCAGCAAGTGTTCCAAGAAATGTTTCTCCTGAGGTTTAGCCAAGTGTTT---ATATATGCTATTAACTTAAGtattcctttattatattgactcattttttagattgattttattctacaaGTTTAAGTAGTTCTACACTACATTGAG--GTTTTATCTCTTCTT--------TGCTCATTTGTTGATAGTTTGAGGTTTAGCAAGGTAATCATTTTCTCACTCCTTAAATTCATCTATTATG--------TTTAGAATTTCCTGTATTCTTTTAGACAATTCCT----TAAGGTCTACCTCAAACATATACCACAAACATTCACGGAATGTGCTTTCCTTTT-ATTATAATTGGAGTACATTCAAATCTTTTTAGGATTTTGCTGTATA

a score=49204
s chr3           150808427 1195 + 160039680 TTGTAATTAT-GTTATCATTTATTTTGCTTATTTCTTAGCCTC-GTATCACCCAACATGGAGGATAGTGataaatttttta----atgtaaaatttataaaCACCCTTGGAAAGAGAGCAAGGCTTTATCACT-GTGTACTACTTTATTTGG--CCTTTTTGGGTGTTTAGTACCAAGTATTATTATAAGACACAAGGATGTATCTTCAAAAATATTTATTACCTTATTAAGGTAAACTGTCTTCCCTGCTGGTGGACGATATTTTATAGAAAAAAAAAATACATCGTCCTATAAACTTCACCGTTGGAGGCCAGCCACTTTTTAGCTGACAACACCATAGCCATTACTTTCATTCCAATTTTAAGGACAGTCGTAGCAGCACTTCAATTAACCAATTAATCAAAATGATATTCAAGTTTCTGCACATCCAGTCAGTGAGGGTTCTCTCCCTGGCACATTATTTCAAATGAGAGCCACCTCCTGCTATGGTGGGTGTTCAGCTGGCCTAGAAAAGCATAGCACTTAGCACTTTTGCTTGCAATGAGAAAAGTTAACCACACTGACACTTAAGTGACCATAATTAGTCCACTGAGATTAATTTGGGAACTTTGTACCTCTTGTAAGGCCATCGTCACATACTTCTAACACCTTCTAAATTGCGGTAGTTCATTGGTTCATTTTCCAAATAGGGTTCTCAGTTATAGTGTCTAGAAGTTCAATTTTTTTAAAATGAAAATATTAGGTACTACAGAAAATAGTCTCAGTAGAAGAAGGTTCACTGGCAGAT-------GTCCAAATT-CAGTGTTTC-------TGTTTTTATGAAAGAGA----ACATGATCAGGTACAGCACCAAAGTCTTCtaaaaattaaaaataaacaaaaataaaatattttaaaaaGCAGATGTGAAACTACAGAGACCAATAT------------CACTGAATAAAAAAGCAAACCAAGCCTTCCTATTAG--------AATTTCAACAATGCCAGGCATCCAT-TATGATAGAAGAAATGTACAATGAAATCAAGTGAATATCTGCATGA---CACATGTAATATGATAATTTAAACATGAAATTTTATTTTCATGAATTTGTATGTTACTAGAAAAATGCATTGCTGTGTAACTGTTTTGTG-AAGGTTTTACTTTTACGTTTATTGTTTATTGTTAAAACGCAGAGTACTGAGAAAACTTAAA---CTTTAGATACATTTCTCTTTAAAACTG
s HiC_scaffold_1 137419035 1217 + 233722169 TTGTAATTATTGGCAGCACTTTACTTTCTTATCTCCAAAGCTCAGCAGTAGACAACAGAGAAAGTGGTGATAAACCctttataaaatacagaatttgcaAGTTTTGTTCAGAGGAAATGAAGGATTTATCATTCATTCACTATTTTATTTGGGCcttcttttcagttttaatatcaGGTAGTATTATGAAAAGTAGGAatgtttcttcaaaaatatttattaccttATTAAGGTAAACTGTCTTCCCTGCTGGTGGACcatcttttacagaaaaaaa---tacaaaatcctaTAAACTTCACAGTTGGAGTCCAGCTACTTTTTAGCTGACAATACCATAGCCATtacttttattctaattttaaggACAGTAATAGCAGCACTTCAATTAACCaattaatcaaaataatattCAAGTTTCTGCACATCTAGTTCATAAAGGCTTTCCCTCTAGCCCATTATTTCAAATGAATGTCACCTCCTGCTATGGTGGGTGTTCAGCTGGCCTAGAAAAGCATAGTAGTTAGCTCTTTCTATTGCAATGAAAAAAGTTAACAACACTGACACTTAAGTGACCATAATTAGCCCATTGAGATTAATTTGGGAACTCTGTACCTTTCCCAGTGCCATTGCTGCAGACTTATAGCAACCTCTAAATTGCAGTagttcattgtttcattttccaaATGGTGTTCTCCGTTAGAATGTCTAGaagctcaa-tttttaaaaatgaagatcttGGGTACTATAGAAAATAGCCTCAGTAGAAGAAAGTCTAGAGGGAGATCTTATGCCTTCAAATTGCAGTGTGTTTTCACAGTATTTGTATGAGAAAAACATCAAATGGtgacatataaaaacaaaaccttc--GTGACTGA--------CAGAGCAAAACATttagcaaaataaatgtaaaatttcagaTATAAATTTTCCATAGATTTATACAGCATAAAAGAATAACATGCACATTCTCCTCTGCCCAAAGCCATTTC----ATGTCAaggttttacatattttttaaaagaccta-aataaaagcatataaaagtatgtttgaAGTCACACATATAATGACTCctcaa--ttcaaatttta-tttaatgcattTGTATGGTCATA-AAATATATGTGAGTGTGCAATTGTTTTTAACAAGACCTAACTTgca-----atagtttattttaaaaatgcaa-----tgaatATGTTTAAAGTgttttaga-atgttttcattaTGAACTG

a score=25104
s chr3           150815706 657 + 160039680 TGAATTCCTTAAGCATGTTGACAGGAGACACTGTT----------------GTTAGAATTACCAATGGACCTCTCAATACTCAAGACT-GAGAGAATAACAGGGTCTCATTATTGTGCCCAGGCCAAGGAAATTCAAATATGCAGCAGACTTT-AACACCACTGGCATTAGTTATATATTTGTGAAACTTG-TTCTTTAAATGCATTTGTAATGTTGACCTACATAGCCCTTTATTAGAGTAACAGACTATTGAGGTTAAAAACCATTGCAGCTAATAGCAGAGTACTCTTCCTGAACTAATTCCACCATTACAAGACACTTCAAAGGCAATTTCCTAATCTGTATTTTATACTGTTGAAAATACTTAAGTAGTACTCTGCACTTTTTCAAACATTTCCCATTATTGTA-AATTAACTGGAAAATGCTTAAGAATATACTTATCTTAC-ATAGGC---------AAAATGTTGAATTCTAGTCTCATTTCAATAAAACTAGAAAG---GTTCTG-GTTAAACTAGATAGTTAATCATAATAGCAAATTAAAAGCAAGGTTGCTTATATCTTTATAAAGCAAGAATGCATACTTACCATCCCCAAACATAATT-AAGATTATTTTGTGGTAAAGGAA---ATTTGAAACCAGATAC---------TCTGAATTCTCCCTTGTCTTCTTAAAATTGGGAATACAAA
s HiC_scaffold_1 137425913 696 + 233722169 TAAATTTCCTAAGCATGCTAACTGAAATCAGTGTTTTAACCCTGTCTGCATGTCAGGATTACTAAAGGAGATTTAAATATTCCAGTCCAGTTAGAACAGAAATCTC-CTTTGTTGGGCCTAGGCCCATGAGACCCACATATGCAGGAGGGGTTGAAAAAGACTGGCACTGGTTATACATTTCTACAATGCGAGGCCTTAAATTCATTTGCAACATTGACCTACATGGTTCTTTATTAGAATAACAGACTACTGAGGTCAAAAACCACGGCAGCTAATAGCAAAGTGCTCTTCCTGAACTAATTCGACCATTATAAGACACTTCAAAAGCAATTTCCTAATCTGTATTTTATAGAGTTGAAAATGCTGAAATAGTACTCTGCTCTTTATCAAACATTTTCTCATGCTGCAGAATTAACTGGTTTATGCTTAAGAATATATTTATCTTACTGTATGCTTTTTCCTGACACTAGTGAATTCTAAtccttttttaataaaacaagacagCTAGTCTTACATTATGGCAGGTAGTTAATAACAATACCGGAATGAAAAGAAACCTGCTTAAAATCTTCTAAAGT-GTACTACA-ATTTGCCA-CCCCAAATATACCTGAAGATTAT----GGAGAATGGAAAGCAGTTGAAAATAGGTGCAACCAAGCTTTTgacctccttcttttctttctgaaagcaggaaaaaaaa

a score=14005
s chr3           150817056 820 + 160039680 AGTTTTCTAAGCTAACTTCATGTA-------------AATCTTGAACTGTACCAAAACTTTAAAT--------GTTTCAATGTTATTTATAGTGAAGATGGAGTGAGCGGCAGAAACATAATCTAAAGTAGAGCAG--CCAGGGTGTCAGGAACTGCATCTGAGCCT------CTGCGTTCTTAGTGCT---TTCATCCTGAGACTTGGCAGGTTTGAGT-CAACCAATTTCATTTGTGTTTTTTAAAGTTGTTTGATTTGATTCTTTCCATTTGTTACCCAGCTAAGTAGGATGACAAGGTAGTAGTCACACACTCAGCTGCTTTGGGAACCAGAAGCCTCACAAAAATGGAAATGATAAGAGAGTGAGGTGGCTAAGATGCCACAGGGACTGTGCCAAACA----ATAGACAGAGTGACTGACAGAGAA---------ACTACACTGCCCTCATGCTGCCTGTGGGAATGAAGAAAGCGCACTCATT---TGTTCTAATCTTTATAA--------------AGGTATGATGTTTTCT--AGTTGAATTTCCAGAAATGTGTATTATTCCCTATTTTATCAAGTGCTTAATCTATTTCAACT--TGGTGGGTTGTGGTTTAGGATATAAATGCTTAGAAGGTACAAGTAGTTATTTATATCTTCTCACTTTATGACAAACTTAAATAGAAAACACATCTAAATGTTTGTTTATTTGATCTCAATTTTCTTGTCCCG--TAATCAATCATGGTGGTTTTGAGTTTCCAGTTGTAGAAAAATAAATGTCTTA--AGTATTCCTATATCAGAACCTACCTTTTTCCTAAGCCAGAGAATGTAAGCCTCCCTAAAATCTGG----------GGTAGTGATAAGAGGCAGCCCCAAACATCAGTG
s HiC_scaffold_1 137429585 870 + 233722169 AGTTTTCAAAGTTGCCTTTGGGTATTAATTGAACCAAAGTTTCCAGCTATACCAATAATTCAGATTAAACGGTGCCTAAACCAAGTATAAAGTTAGAGAGGAAAGAAGGGca-caacaaaagagaaagaaaatcagaaccaCA----CAAAGACTGCTTCAGTCCCTGGATGCTTGTGTAGCTGGAGCTAGATTCAGCTCTGGACTTGTCAGTTATGAGCGCTAATAACTCTATTTGCTTTGCTTAAATTTGTTCAACTTGCTTCTTTTCACTTGTCATCCAGTTAAGTAAGAACATAAAACAGTAGTCACATACTGAAAAGGTCAGGGGAACAGGATCATCACATAAATAAAACGGGTGACAAACTGAGAAGGTTCTAAAGCCACAGGGACAAGTCGAGACAGCACAGAAAAACAGTGTGTAACAGGGCAGGGGAGAGTACCAATATGCTATTATAGCGGCAGTGTGAATGGAAACAGTGATCATACTAAATTCTCTTATCTTTAAAGGTAGATACACAGTTACATAGGAAGCCTTCTAAAGTCGAGTTTATAAAGATgtgcattatttattattttatcaaatgCATTCTCTACACTAGTTCATAGCAGACTATGATTTTGAATATAATACCATAAAATGGA----TAATAATTTCTATC-GATCacattacaaaaaa-------agaagacacatCTAAAAATTAGT---TTTTGCTTTAAATTGCTTGTCATGAATAATTCACTCTAGTGTTTCT-------TATATGGAAAAAAAGTGATGCTTTATTAATATTCCTATTTCCAAA-CTGCCCATTATCTAAAGCAGACAATGTTAGCATCACAGatctcaggaagctgagcagaTAATAAAGAGAGGGAG---CAGAAAGCAGTG

a score=43706
s chr3           150818930 1440 + 160039680 TACATGTTGGCTCTTTCTCTTTTACTTTTATGCAGGTAACACAGAGTTAGAACTAGGAGAAAACTGTGTCTATGCAAGGATTTGATTGAAAAGCATGTAGGCGATT---------GTCCAGCGTTTA--GGAGTTCATTATCCAGCAATTAA---TGAGGCTTTTAGTCAGGAAGTAAAATGGC-TTGTTCACAATACAGGGCTTTTTACCTATTCAAAACCAAGTCATAAGCTCTGAGTTTTCTTGCTTTGGGCCCTATATATTTATTTTGTATACTTTTGCATACAAACAAGTAAAGAAACATCATGGTTCTTGGGGTAAATAAAAAATGTACATTTCATCAGGACTTGAAAAAAA-------------TCGATTTTCATTTCACGATAACCTCAAATGTGAAAGAAAAGAACATCATTTT-TAAAAATACAAAGTCTCATTTGGTAAATGTTCTTCTCACAGTTACATCTA-TGTCACCATGGAGAAATTTTGCAAAAGGACATAATTCAGAGACCCTGGCAAGCATGATTGTGACACATGGTT-CTTTGTACCATGCAATACATTACAGAGCCTTCCCTTTTCTTGTAGTTTTG-TGTGGTGAATTTTAAGGCCAAGTATGGGATAGATGCCTGGAAATCTGTTCCTTACATCTCACAGATCCGTCCTGGTGGGAAGCCTGCCTGCTCTCCTTATTTTG-AAATCCACAAGCAGCTAACTGAACATAACCTAAGCATGAGATACAGCATGCGAGATCGCCTGCTGCTGCCAATATCACCCCGCCTCTACCCTCCCTGCTCATTTTGTTCTGATCTCTTCTGTCAGCTTTGGACTTTCCTGTCTTGGGTTTATCATTG-CCACCCTCCTTCCACTTTTATTCCCAACTAGGCCCTACGG-------TCTTGCCTGCCTATTAGCACGTGTGATCTCTTCTATGTTCATTTTTATACAGGCAGTTAAATGACTCTGAATGCCTCCTGAAAGAGACAAGCTCTAAATGTCTTTACTTTTCCTTTCTTCCACGTTTGCTATCAGCATCCGTGCATTGTCTACTTCTATACTAAGATACAGTTGCTCTTCTTGCCCAATAAAATAGTTTTTATTTTTTTCATGATAACTTGATGGC-TTTTAGGAATGAGAA---ATTAAATAGAGGCAATCATATGAC--GGCTTACAAGCACGAGTTACTCA---------CAAAT--GTACAGAATGCCATGATGTCGTTTTCCTTTCTACCTGATCGTTTTCTTGACTTGAATCCAAAGACATATTAAGTAATAGATGGACTGTTTCCAGGTTAGATGCTGAT----ACTGTATCACACATAGCTGACATTTGTATGAGTGGGAGGAGGGCTGACTGCCA--AGTCTGAGAGTCTTAGCTGATTGTCAATTCAGTCTCCAAGAGGAACCAGCAAATACCCATG---------TGTCTTTGGTCCTTTTGCAGTTTCATCAGATTTAAGTGTATCGAGCTAATATAAAGCA
s HiC_scaffold_1 137433346 1438 + 233722169 TAAATGTTAGC-----CTTTCTTATTATTATGCATGTAGCTCAAAGTGAGAG--AAGACAAAAGCGTGTTAAATCCAGG-------TTGCAAGCATTTACGCACTTTGCTAAAGAGTTCAGAATTTAAGGGTGTTCAT-----GGCAATCAAAAGCAAAGGTTTTAGTGTGGAAATACCAAGACCTTCTTTATAGTGCATGATTATTCTCTGACTCCAT-TCAGATCTTGAGCCCTACTATTTCTTGTTTTGGgaatatcttatttattttgtgtgcatgtgtataaaaaaaggcaaaaaaa----atgatgcctggg------acaaaatatgcatataaccca-actggaaaaaaaatgaacctgAGTCTCAATTTAGATTTC--TATAACAt-----------gatgaaaacatcatacaataaacataaaacatGCTATT-GGAAAGTGGACATATCTAAATCATATACAGTATCACCGAAGGAAAAATTTGTATGGGGACTCAGTTCTGAGGTCCTGGCACACATGAGCATGACACATGGTTGCTTTGCCCTCTGCAGTGTATTTcaaactcttcttttttattgtaatgTGGGCGCATTGAATTTTCAGGGAAAATGTGGGAGAGAAGTCTGAAAATCTGTTTCTCACCTCTCACATATCCAGCCCGGTGGGAGCTTTGCATGTTCTCCTAATTCTGAAAACCCACAAACAGCTAACTGAACATAACCTAGGCACCAAATGCAGCATCTGAGAT-GCGTACCAGTGCCAAAGTCACTCTGCTCCGTCCTTCTATGCTCATTTTGTTCTGATCGCTCTTGCCAGCTTCTGACTTTCCTGTCTTTGGTCCAGCACCACCCATCCTCCCTCCACATTTCTTCTTACCCGAGCCCTCCTGCTGTATTCTTTCCTTGCCGTTTGGAGAGCATTGTATCTTTTGTGTTCATTTGAATAAAGTCAGTTAAAGGGGCACGTATGCATCCTGTAAGAGTCAGCctacaaatgtctttaatttgtCTTTATTCCAC-TTTGTTATCAGCATCAGTGCATTATGTACTTCTATGCTGAGATACAATTTTCCATCATTGACAAAagaggcttattttattttttcaagataac-tgatggctttttaaaaatgaaaaaagattaaatggaGGTAGTCATACAGCTGGGTTTACAAGCATGAGTTACTCAGGAAAACTGCAAATCACTACAGAA---------------CTTCTTTCTATCTGATATTTTCCTTCACTCAATTCCAAATACATATTAAGTAATGGATTAACTGCTTCCAGGGTAAATGCTGATAATAATTACAGCATATATACCAGTCATT--TATGAGTGACAAGAATGCGAAATGCCGCTAGTTTGAATG--TTGGCTGAATTTCAAATCACTTTCCAA--------AGCAAATGTTCTCGACTTTCTTATGCTTTTGATACTTGTACatatttatcaattttaaatttaaagagctaATTTTTAGCA

a score=39739
s chr3           150823702 1722 + 160039680 taccaaaaGAAAAACATGATAAATAAAAAAGTAAATGAAACAAACAGCTTTATTTTATAATGAAAAAAGAGAAAGAGAAAAACTTTTCACAAATTCAACACATTGTTTCTTGAATAGTAGGACTTGGTAATTGTCATAACCATTTGATTGTTTGGTGTTTGTATTTAGCACTGGTTTCTGTTTGGCTTGGTTTGTGTGCTTTTAGAGTGTTTGAATCACCGT--GCGCAGCTGAGAGCCACTCTCGT--GCTTTCTTATCAGAGCTCACCAAGAAGAAAAACCCTTTAAAGGAACTGAAGATGGACTATTATCAGGCACCAGTGACGAGTCAATCAGGACAGATAAACTCTGAGTGAATGTCGTCTccttttggcagccaagg-aaaaagggaaaatgtggttttcccaaggctgcctgcagacacaaacattcttttggctctgaactgagcagagat-ttaacatgtggtttcttatgttagagacactgaaaagacataatggattgtgtctgcacacaatttcacggaaaatagatattgttcagttgcaaaggctgccattttaaca-------tacatttataattcagtgaagacctttctgtgga-gcctgagatacaaacgtctgtccatgctctccctctaa-cctaac-tagagagctcatagagctcagagaatctgcaggaagagatAAACAAATTGTCCAAAG---AAGCTTTCTC----------TATTGCAGA--AACCTGAAACAAAAAGGAG------GCCAACAAG---GCTGTGTGTTCCTAATGCTGATTGCCTTAATTAAATCCCAGCATCACTTTG------------CCATGACTGAAAATGTTTTTTAAATATATTGGTGTCTTGTGCACA------AAAGCTGTTGATAT-AAACATGAAGATTAAA--ATAATGCTTTGGGAAGAAAATAGGCTTTCACAAATCAATTCCTAATGGTAGC-AGAAAAAAAATAGTACTTGAGTCCACTTTTAATACTGTAGTTATTTGTATAGTATTGTCATAGAAATTCTATCCCAGAAATTTATAAACTAAATTTCAATTTCTTGAATAAAAACCACTTGTAT-TAGTCTTTATGATTTCCATAGCAATCAGTACAGACAATTTACTCTACAATGATACAGTAAGTACTATTTGGCATGACTTAATTGTCCATTCCACTTGTAGAAAATAGCTA--AAAATGTAGTGTTTTATTTTTTATATAATTGAT-----GTTGATGTTTAAATCAATATTTTACAGAAATCATGTTGTAATAAATTTACTCTCTCTTTTAGAAAGATCAAAGTAGCATAACAGCAAATTTATGAAAAT-------GAATTTTTTCCATTATTCTTACTTAAATTAAATATCCTACAATTAAATAAATGTTAAATTAGTTTGAGTTCAAATAATGGATAATGCTGCTGGGTGTAGAGCAAATAACCCAAATGTGCTTGATTCATTATGGAGATGAAAATGGTCTAAGAGAAAAGGAAGGTAAATAATGTACCAAGTGTGTACACACTTCGAG-ATCTTTTAATGTAAAGAAATGTGTTCAATGGAAACATGTAATCATATTATTTAAG-TATATACCAATTCATGGAAAAGTGGAAAACTCAGAAAATACTGAGAATGGAACTGGGGGAATAATCAGATACTTACTAGCAAATGAAAGAAACAATGAG--AAAGAGTATTTTATGACAAAAATAATATCTGAGGGAAAAGTG-AAGTTGGAAGAATAACGTGAATTATTTTAATTCAGAAA
s HiC_scaffold_1 137441985 1703 + 233722169 tacaatgagaaaaatatgagaaGT------------GAGGCTACtgcttttgctttataa-------aaattaaggtaAGCACTTC-CTTATATGTATTGCATTATTCACTGAAGAGCATGATTATGTAATTATCATGTTTATTTGATTATTTAGTATTTATGCTTAGTGCTT-TCTTTGTTTggagttgtt------atttttaagactctGAATCAGCTTCAATACAGCACGAAGCAATTCTGCTAAGCATTCCTTTCAGGGCCTGCCAAGAAGAAAGGCACTTTAAGGGGACAGAAGAATTGCTATTATCAGGCACCTGTGATGAGTCAATCACTGGAGATAAACACTGAATTTATGTCTGTTCATCTTGGCAGCCAAGGCAAAGAGGAAAAATGGGGTTCTCCCAAGGTTGCCTGCAGACACAAACATTTCCTTGGCTCAAAACTGAATGGAGACGTTAACATGTGGTTTCTTATGTTAGGGGCATTGAAGA-ACATAATGGATGATGTCTTCaca-aattttatgaaaaactGACATTGTTCAGCTACAAAGGCTGCAGTTTTAACATTAAACGTAATTCAGTAATTCAGTGAGAACCTTTCTATGGGCCCCTGAGATAATGAAATCCAAGTACGTTGTTTCTTTAAGCCtgacttaaaaaaagaataaagtttagaGAATCtggaggaagagataattatcctGTCCAAAAGACAAACTCTCTCAAACGTCCTATGTCTCAGATGAACCTTTGGCAAGAACTGAACTACTGTCAACTGGGTAGTTTTGAATTTAGaatatttgttttgttaattacAGGTGGGCTCCATTCTGTGGTTTGCTGATTTATGGCCATAAA-AATTGCAAAAGGTGTTG----CCTATGTACACACAAGAAAATGATTCATATGAAATGGGTAGATTCAAATATAATGTATTTGACAAAATAAAAGGCTTCA-AAATCGATTCCAAATGGAAACTGGTAAAATAATAGTCCCTGAAT---TTGTTCATATTGTAGTTATCTCTGTGGTTTTATTAATTATATTCTA-CTCATGCATTCATAAGctaaatttcagttctttgaagcAAGTGGATTTTTCTACTGTTCCTCCCTTTTCTCCAGCAATAATTAGAGACTACTTACCATGGAGCAGTACAGTAAAGGGTTTTTAATCCATGTCGGTT-TCCTTTCCATTGCTAGTCATCATCTACCAAAGAACAGTAATTTCAGTTTCACATAATTGATtctaagttgatttttaaaacaattattactCAAAGTCATACTAAAGAAACTTTACTTCTCCCTTTAGAATTATAAAAGGAGTCTAATAATACATTTaagaaaagcatttgaaaatgttttataagaatcttatttaaaatttat---------ttaaataaat-ttaagataggTTGACTTAATATAATAGAAAATGTTGCTggg-aaagagtaaataaggtaaGCATGAGATATACTTTATGGGAATAAAAATCTTGTAAGAAAAATTGACAAAGAATAATTTATCAagtgta-atatattttaagaattatgaaatttaaatatcaaaatgcagtATAAATGTGT-CTAATATAATTTGAGctacat------------aaaaatgcaaaa-----aaaatgttGAG---------------------GTGTATTTATT-----GTGACATTTACAATGAGCAAAGGAATATCCTACAAGgaccacaa-----aaggaaaaaatatgcatTTGAAGAAAAGCATAGCATATTTTAGTTATGAAA

a score=26273
s chr3           150859663 2433 + 160039680 gtctggcaaaatcattcaacaa------tcttttacagtgaaaacttgactatttttgataatttattgaatatctttgtac--aaaatgtttacaacagaGCA--TAGGAGAGAATAATCATATTTACATTAACATTGTCTAGA---------ATTACAAGTGAGCATCTTACC------------------ATAACAAGAAAACCTTAAAATACA----------TAATGAAAACATTTTAC------AGCATCATAACTTTAAAAATGACAAATTGGGTCATAGCAAGTCAGGATCCTGTACACAAATATTATTCATTGATAGACATTTAATATTAGCTTTGCTTTAACTCTTGGAATTCTAAAATAGTGCGATGCTAATAATGTCATCACTTTCATTAAAGTAGATATAAGAAAACATTGAATATGGTCAGATG-TTCAGGTATTCTTTTCTAAATATGAAAGTATATGCTTG-TAAAACATTTTCATAGTAATTTATATACATAGAATATTTAAGAAGCATGGGTGGAGTGCAAGTGCCAAAGAGAGGGGTTTTATTTACTTTTAGAAAGAGCATTATTATCCACAGCCTGTGTTTGTGTATAAA-AGTAAGTCCAGAGGGTTTGCCAATCGAGAGGCTCTCAGGAAGAACAGATGCTGTGAGGTAGTTCTAATGTGATTCCTTTTTGTGCAGCACATTGCAAATTTGGAATTTGCATTCACATTTTAGTATTTAGAGCACCAGGCTAAAGTGCCATCCTAAACATGCCATTAAGAAACAGCTTGTATAGTCAATGAAGTAGCCAAATGCTGTGACCACAGTCTCTTTGATTTGATAAATTGAGTGCTCTACTGTGAGCATCTCTCTCGTACCTTGTCTCCTTGTCCATGCTTAAAATTAGAAGTCCAATACTTCTACAACTTGCCAAATATGCAGCAGTAC-GGATTACTTCTCAAGTTTTGTCAGGGTAAGTTTTATTTGCCTTTTATCTGAAAGTCATGGA--AAAATCTTTAGCATCAACTCTGAAGGACCTGGTTGAAGACTCTATGTTCCTTACAT-GGTAAAGAGAGTGAATAACAGGTTTTGAAAGTGTTGGTAATATAAGCCAACCCAAAATTCAATAAGCtaaatttcatattttaattataataaaattGAGAAAGAAATAGGAAATCAGAATCTTTCGTTTTTGACAGTATGTAGAATA--AATGTGGCCAATAGTAGTCATTTATATATTAATATAGAAAATATTGCATCATACTGTGTATGATTTCAAAT--ATTATATTTTGTCAAACACAAATGCTTTATCTACCGTCAGTCAGGTTCATTTTAAACTCTGTCAA---GCAAAGGAGCTGAAC--CCTTCCTTATGCTTTTCAAGAGCCAAATATAAAAATTATATTAAGAAATACACAGATACATCACACTTCATATTTTGTTATATATACATTTATGAGCACACACATACATATATTATCATATCACACAGGTAAATAGGCATTTCTATTCAAATTTCAATGGAAAAATTTTTTTTGTACTTGGGTGAAAAAAAGC--TGCTATGGTACAAATTCCTTTTGAAATTGACATTGTGATTTTTTTTTATTAttggtttttcaagacagggtttctctgtgtagccctggctgtcctggaactctctctgtagaccaggctggtctcgaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcgtgagccaccacgcccagcGATGTTGCGATTTTTAAATATACTCTAATTTAAAGAAATT--ATTGCATTGTAT------ATGATCATTGAACAAAAGTGATAACATTGCTAACACATTCCCTAACAT-------AAGGACAGATGTAA--TGGGAT-TTGTGAAAG---AAAGATTTCATTATTGATGTTATT--TAATACATTTAGTGTCTGATTTCCACAATAAAAATTTTTCAAATTCAGTGAAATATTTTAATAATACTTGTATTCTGTCTCAGAATTTGTACTGATAGAACAGAATCTTAATGAATATATTTTCAAGTAGATTTATGAATTGAAATTATGTCAGTGTCCTTTGGTATAGATAGCAGCATGATGTGTCTCTCACTGCTTTGGAAACATTTTTTGAAGAATTGCATAAAAACCCAATTTAACACAAGCACAAAAGCAAACAAGCAG------TTTTAAAACA----------CCTTTTTTTTTTCTAGAAAAATTTTAATCTGAAATGTTTGTTAA--TTATCATGAAAAAGTAAACATTGATTGGAATGGTTTGGGGGATTCTTAACTAAAAC-TAACTCAACATCAAAATTATTATGACTCTGTTTTCCATATCTTCAACAGACATCTTATGTAACAAATTATTGAATACATATAATAATTTTGAAATAACCTGGTAGCAACTGTATTTGT-TCTCTTGAGTC-----TAAAAATGCC--------------TAAGAGTC---------ATCAAACAGTAAGCTGGTCCTTA-TGAGATACTTTAAAAATAGAAGGAATTTTTAACACAGATTA
s HiC_scaffold_1 137485943 2214 + 233722169 GTTGGGCAAAAGTATCTAACACAAAGGTTACTTCACA-TAATATGCTGTATATGTCATATAACTTATTGTATATTTGTATCCTGAAAATATTGGCAACCTAATAGATGGTAGAGCATCTTTAT-TTTATCTTACAGCTGGCTGAACTGCTAAACACTGAAAGAAAGCATCCTGCCTCACATTGCTAGTctgggaaaagataaaaatctcaaatcaaaatcttatttttactgaaaatgtataacttaaaaatagttatgaATTGAAAAACTGCAAGTCTAATTACTGTAAGTCAGAGACCTGAACCAAACTGTT-----------------------TAGCCTAATTTCAACTTTTGGATGTCTGAACTGATAATATAA-ATTCAAATCATCATTT--GATAATGCTAATATAAGAATACTTCCAATGTGTTTGCATAACGCAG---------TCTGAAACTCAAATTATATCTGTGATTAAAAACAGTCAACTTAATTGatataaatgaattatttaaagtG-ATGGGTGGGG--CCAGTTTTCCAGAGACTACCTTTATTTAGTTTT-GAGATAGCATTATTATCCATGATCTGTTCCCATCTATAAACAATAAGGTCAGAGGGTTTCTCTATAGGGATATTGGCAGGAAAAGCAGATGTTCTGGGGTAAGTCCACTGCGATTCTTTTTTGCACAACACGCTGCACATTTTGAACTTacgtttttgttttaaaattcagagaaCAGAACTGAAGTGACTTCCTAAATATATCAATAAGAAGCCGCTTGTCTAGTAAATGAAGTATCAAAATGCTGTGATCatagtttcctttctttgataAATTGAGTACTATAGTGTGAATCTCCCTCTGACACCCTTTTTTCTTAAGCATGCCTAAAATTTGAAATTAGATATGTCTACAACTTGCCAAGAACGAAAGAGAACTGAACTTCCTTTAGGTTTTCTTCAAGATAAGTTTAAGCTGCCTGGCATCTGAAAGCAATTGAGGACAAACCTTAACACGAGTTGAAAAGGATTC------AGGCTGAATGTTccataaataaatggagagaggAAATAATAGA-TTCGCAGGACCTACCATCTAAGGCCAACCCAAAATTCAgtgaactatatat-atatgctgCCAATGGTAACAATCACA----------AAACTTGAATGACTGAATTCAAATTGGGAGTTGCATATTGTTGTGACTCTGTGCAGCTTTTTACTAGTTGATA-ATAATATCTAGCACCACAC-----ATTGTTTCAAACAAATCATATTTT-TCAGCTGCTAATAATATAGGGATAGCCATGCAAGTTAATTATCGACTCCATTCATCTGCCAAAGAACTAagcattattattaatttctttc-----------------ctttctttaagtgaagca--------------------------tgtatatatatttctgaaC-------TACAAATGT------------------------------------------AGTTGGAGAACATTTACTGCACTT-GATATAGAAAAGCCACACAGTAATATGAATAAACTTTGAA--------TATGATTTTGC-----------------------------------------------------------------------------------AACTTAAAA------------------------------------------GAACTACAGCATC-------------------AAATATAAT--------AACAAGTCAAATTGAATTGtacctctcaatgattccttttGAAAAGTGAT------------CCATTTTCTAATATGCAAATGAGAAGCATATGAAGTCTGGAATAttgtacaagagaaaaaaatttacttttgacACAGTGAATATTACATTTACCTAGTTATTTATGTTGCACAATTAGTTTACTTCTAATGAGATTTTTCAACAAGATTCACATAT--TTTTGGCAGTcatattga--------aattttattgtgcagctttaca-----atttataaattatgaataaaacatta----ataatattGA-ATAAGAActatat---tctatattatttctaaacattttgtGAATTCTTTCCAGTGAAATATCCTTAGTACTAGCCCAGGAG--GATAAGCAGTGGAAATTTGGAAATagttacagatttcttttgtctttct-gagaatttttaatttgata---ctgTTAAAGGAAATATTGAAAGATAAGTGATACTTGAAAGAGTTGTTGAAATGCTTAGACAAAACTTAATTTAGTATTGAAAGTATTGTGAGTCTATTTTCCA-AGCTCCAACAGATTTCCTATTTATTATCATGTTCCATATCTATGGCAATGTTGAAATTAACAGGTGGCTCCTGTGTTCATGTTTCTTGAACCTTGGGTAGATCTACTTGGCATCTCAGAAGTAATAGTCAACAAACCAATCAAGCAGTCAGGTTGTTGTTACTGAGATACTTTCATCACACCAGAAA-GTTCAATTCAGTTTA

a score=30943
s chr3           150863571 1464 + 160039680 ATGAATGATAAATGAACTATATGCCTTGTCATGTATTGATCA---TTATCTTTCAAGCAATAGCTCACTACAATAAAAATTT-GAAATCCTGAAGTGATGCAAAATTTATAA------TTGAAATAAACATTTTGTTTAGTTGTAGCCCTATGATTGCCTGTGAGATACTATATATGTTATTTTTAGCAGCCCCAATGTCTGATGTCAGTATTGTGATATGGCAGTCCTCTCATATAATTTTATATTCTTATTTTA----------AGATTACATCTACCTGAACGACATTATAATATGAAACAGAACAATTGTTGA-----------------AGTTCTTG-------------------CAACAGACATGT------------AGATATGCTAGTTTTCAATGTACTTAGACAATGGTTTTGATGAACTCTAGTTGGCTATGACTGTTCTTCTTATCTAGTTTTTCCAAACTCTGATTAAAAAGAAATTAATCACTTTAAAGACAGACTCAGGTATGAAGCTTTCA-ACACAGCACACCAAATCTGATGCTATGATCTTATTTAAGTTTTGAAACTTAGCCAAGTCCATTATTCATATTTATAATTTAAAGAGCCACTGTGCTCTGAAAACATTCAAACCCCTCCTGGTTGTATTAATATTTGATATTTGATTAGGTTAAGATGCAAATGTGAACCCTCCATATGCTGCTGAATTGCATAGGAACAGCAGGTTCCATGTGGCCAGGCCACCTTGGATCTCCCAGTGATAAATATTCACAAACTCTATTAATAGCTCATCATCACTACTTGTGTTTTGCCCTGCCAACCTTAGGGCCAGTGATCAAATGTGTCATGATTTTCTCAACTGCAGAAATTTATGCTCTCAGTAATTATTGTTTTCTGAAAGTGGaaatttttattttaaaaagtaaaaaaaaaaaatCTGCAATATTGTGGGTTCTTTTTTCAATT---AAAAAGTAGATACACAAGTTAAG-----------CAAACTGCAAAGGAAAAT----ACTAATATTTGTTAGAACTGGGGAAAAAAAACAAAAGAAACACACTATTCTACAC----AGTTGCCAGAAAAAAGCTTAGAGAGCTTCCAAT-----------TTTAAAAGCACCTTCATATATATCATATTAAAGTGAGTGCAAAAATATTTTAAAAGGATACCCAAGTAG------ACAAAGGATAATGATTCT-ACAAGAGATGCTTATTTATTTTAGATATTTAGAGCTCGAAAATGAAATCATTTTATAGGGACTAAACATTGTCTACAATAATCTCCTTGCTGAGCAAACGATTCATGAGA----TTGAAAAAAGATGAGTTAAGTC------TGTCTGTAGAACAAAAGG-------ACCAGAAATAG-TTATGATGACCCTTTATTAGACTAATCACTTTGAGTGTTCCATG---TTGGAGGCCCAGCCATCCACAGAATGAACAATTTTTGAGA-------ATAATATAAATGGGAAAATAAAACAAATTGATCAGTCTTACTCTCCCCTTTAATATCCATTTTCTACCCTTCAATGGTCCCCAGTTTTACTTGAGAAG
s HiC_scaffold_1 137489235 1539 + 233722169 ATGGATGAAAAATGAACTTATAGCTTTTTCAGGTTGTGAACAATATTACTGTTCAAATAAAAGCTCACTACACTGGaattttagaaattcttactAAACACACAGTTCATTAATTGTTTTACCATATACTTTGTAAGCAAATATAAGGGTATGATTTAATAGAAGATTATTTATATGCTCTTGGTATCATTTATAACATAAGAAGT--Atgtctttatatg----ttcttttgtATATGTTAATATGAATACTTTAGATGCTAAAAAAATTATACATCCGTATATAGCATTAGTGCATACAAGTCAAAAATAGCTGATTGTAATTTTGTTTGTAAATTGTTAGATGTTCAAtctaaaaacttaaaaaacatttttaaataagttcAGTTATGCTGCTTCTGAATAGAAGGGAACAATGATTTTGATAAAACCTAGTAGCCtgagaatatttttcttctctatgttATCCTCTTTGTGATTAGAAACATATTAATCACATTAAGGACAAACACGAGGA--AAGATTTTATAGAAACTAGAAAAACTAAGAAGCTatgatattatttaaattttgtaaccTAACCAAGTCCATTATTCATATTCATAATGTGAAAAGTCACtgtgttcttaaaatatttagacCCCTTCTGATTGTAttaatatttgatatttgatTAGGTTAAAATGCAAATGTGAACCCTCCATATGCTGCAGAATAGCACAAGAACAATATGTTCCATGTGGCCAAGCCACCTTGGATCTTTCAATAATAAATATTCACAAGCTCTATTAATACCACATCATCACTACTTAAATTTTAACCTGCCAGGTTTTGGGTCAGTGAtaaaatttgtcattattttcacAACAGTGGAAATTAATGTTAGTAGAAAGTG-TGCCACATGAAAGTGAA-----TAATGTTGGGATAATTAAAAGGAAATCCTGTAGCA-------ATTtttttacaaatacaaaaaaaaaaatggataattataggaaaataattctaaaatgtgaaaaaatatgcCCACTAAGACcaccaagaaac-agaaaaacaattagaAGAAATTAGCTCTCCTACTCTCCTAATtgt-----atcactttaaaaatattcatataatagATGGTGTTTAGGAATAATTTAA---ACAGCATGGC-AAGTTAATATATGAAGA--TTAGAAGGCAACATGAATATCAGGCCAGAGAAGATAAAGATTATGACAGGAATAGATTAtcagttt---agtttttaaattacatagGGAAgctattttacacacttaaaatattttagattatgATCTC---------TAAAAATTTTATCAAAGGTTTTGAAGGAAAGTCAGCTCAGTTATATTGAGcatgtgaaataaaaaacacacacacaaaaaacagaacaaaataaaacaaaacaacacctaTAGTCCTGGGATTCATATGTGTTTGGTG--------------AGAATGGACATTTTCCAAGACTGATGTACAATTTACAAAGGAACAGACAAGAaa---agtattttggatttcttctttAGCATCTGTTTTCTACTTTCAAATGGTTCTTCATTTTATCTGAGAAG

a score=60801
s chr3           150869252 4573 + 160039680 [encoded data, 4986 characters]
s HiC_scaffold_1 137501920 4562 + 233722169 [encoded data, 4986 characters]

a score=9926
s chr3           150880943 577 + 160039680 tcGCAACAATCCTCAAACT-CAAATGGAATACTCTGCACTCTT------CCGCTATAGAACGTTTCTTC-TCCCCAGAACAGATGTATCCGGATCTACAAGCATCAGGCTGCTATCTCATTTTCCAAGAGACAAGACCTTAATACTCAGCCTCGGATATGAAGTGGTTGCCAACTTGTTTTCAATTTAGAAAACCCTAGAAGGAACTATAGATTATTTTAAGGGATGTTTTCAAATATCTCTGCCTTCCATGCTTCAATTACACTTCTATAGCAGAGGAGCATTAGTGA---------TTTTCAAAC-TCTCCTCTTCACTCCAGCTACAAAGAGCGACTATGCCCTTGCTCACCTCGCTCTCTAGGAAAGTCTAACTGCTACTTCCATAAGAATATAAAGCTGCTGTT-GTTCTCATTATCA-----TGAAATTTCAAGCTAACAGCTTGAGACGAAAGGTAAATGTTCTAAATGTAGAATCATTCATTTCTTAAAAGTTTGTTTTGCTTTTGTCTAAACTGAGGTTCTCTCTCATTATTGACTT-TAATGTAATAAGCTCAAAGTGCCTGCAAACCAAGTATGAAAGTTAAAATAAAACA
s HiC_scaffold_1 137535097 544 + 233722169 TCACAACCATTCTTTAATTTCAAGTGGAATATTCTGTACCCTTGAACTCCTTCACCAAAACATTGCCACATTCTTAAATTAAATTGTTCTTGATGTATTAACATCAAA----TGTCTCATTTGCAGAGAGAC-----CTCAAAAGCCAGTGGTTTACACAAAGCAGTTGCCATCTTGTTTTCAATTTAGAAAAGCCTAGGAAGCAATATAGATT-------------------AATATCTCAGCCATCTAT-----AATTATGCTG-------AAAGTAGCATTAATAAAAAGTCATGGTTTCAAACATCTCTTCtgaataaaagatataaagaaagaatGCACAATATTTTCCATCACTCgccatgtaaattttaa----attttcataggaGATTAAAATTACTATTAGTAGCTGTTAACAGTTTTTAGAACCTCAGATTAGCAACAGTAATTAAAAGATCTTTGTAATAA---CATAAGCATTTTCTTGTTGACAATT--------TTTTGT-TAAACAGA-CCTCTCATTAATTATTGATTTCTGATATAATGAAC-CAGAGTGCCTGCAAACCAATTATGCAACTTTTACAAAAACA

a score=35338
s chr3           150885430 1258 + 160039680 AATCATTATGGTTTTGAA---ACTTTTAATGCTCCACATACAAATAAATATACAACAAAGAGCTATTTATCATAGAATAGAACAGAGGATATA-------TAAAACTGT--CTCCCAAATACCACAAGAAAGATACAGATCAGGTA------TATTATAGAAAA----AGACTTAGTTTCATATATACTTGTAC-CCAACAATGGCAGTACTATATATACTTGTAGGTG-----TGAGTATTTTGATAGTTTTATAGTCATCAAGAAACAATCTGAATCTTACATCATTT---ATAACCAAAGGA-----AGACATCTTGCTGATCTTTCAGT----------------GTGTGTGTGTGTGTATgagagagagagagagagagagagagagagagagagagagaAAATGTGTGTCCAACACAT-ATAATTAACATTTTATCAAAAAGTTTTGTACTTTATCTC-----TTAATTCTTAAATTAAATGTTGTAATTCATGCGTACCCATGGAAGACAGGAGC-------------AACTCAACATTAGGTGAAGAACTAAATATATTTCAGTATTTGTCACTGCCTAGTTGGCTA----ATATTCAAATCAAAATGAGAATGCTCATGAAAACCAAATGTAATCTAAAGAAGAGCGTCTTAATTCTATGAAATTGTCTCTGATTTTTTAATTGTAAAATGATGTTATTTTATTAGAATAATAAATAATTCATAAGGCAGATATATGATGAAAATAAATCTGTACCTCTGTAGTTCCAAAAAGCCACACATAAAGTTTGAGCTTAATTTTCTTATCCAAAATTTGTCTCTCCTCTCTGAATGATCAGATCATTTATGGTCTTCAATTTGCATATATATTTGACATCATTTATGAATGCTTTATAGCCTGCTGCAAGTGCTATAAGTTTGTTTTATGTATTATCTACAACCCTCCTGCA---CATTGATTACAATTGACCCCAAATC-----------CATTCTCATACTAATGTCTTGGTGTTTC-CTCCCCGTGTCTGAGCATAATGCTCTTTGCAACCATGAGGCTTGATGAGAGTGGCTTGGCACAGTCATGAGATATTTCACTTTTTTTTTTTTTGATTTAGAATAATAGTTGGTGAGCCAAAGGGGGAAAAACATTAATAGCCTTTCCTTTTACCTTGCCAT--TAAAAT---CACAGTTAAGTACAAAACTGGaatttaaatttttctttttaattattgttttatatattttaGGAAATTAT----TAATGGTTGGATAATCAAGATATCTCTAAAAATACATCAAAACACATTTAGCATCATAAAAGATTG--TTTTCAATCTGTAGATGCC
s HiC_scaffold_1 137538318 1257 + 233722169 AATGACTAAGATTTTAAATTGCCATTTTATGCTCCAAATgtgaagaaataaatgg-aaagaattaTATGGCAGAGAAgaagtgagaaaatgaaaaaaaattaaaactatattttccAAATGATACAAT-------CAGACCAAGTGAAAGGTTATTATTAGAAATGGGAGGTACAATTTAACATACACTTGGTCACCAGCAGTGACATTGCTATATA--ATTCTAGGCACACCATGAG---------------ACACACTTCAGGAGGTTATCTGATTCTTACATTAtctcaaacaacaaaaagatatgGAGACTTCCAACTGTTCTTTGAGTTAGTTTATaatgtcatgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtatg----------------------tgtgtgtctaccAGATGAAAATCAacagcatattttaa--tttttgactttGCCTTAAATATccatcttaaaattaaaagttccaatTCATAACCATACCTACAATGCAGAAGCCAAAATTTGAATGAACGTCACATAAAATGATGAACTaaatatatttcagtattttcCAAGCCCTAGTTGGCTAGCTAATATTCAAATCAAAATCAGAATGCTCATGAAAACCAAATGCAATCTAAGGAGTAACA-CTTAATCCTATGAAATtgtctctgattttttaattgtaaaattgtgttattttattagaataataaataattcataaggtTTATATATGATGAAAATAAGTCTGTGCCTCTGTAGTTACAAAAAGCAATACATGAAGTTATAACTGAGTTTCCCTACCCAAAGTTT-TCTTTACTTTCCTGTTGAACTGATTATGGATGGTCTTCAATCTGCATATAAATTTGACATCATTTGTTAATGCTTTATGACCTACTGCAGTGTCTTTAAGTTGGTTTTATATGTTATGCTTAACTCTGCTGCAAGGAGTTATTAACAATAGgcctaaaatcaaaatagagtgAAAATGCACTCTAATTTACTTGCATTACGTTTCCAGTGTCTAAGCATAATGTTCTTTGCCACCATTAAGCTTGATGAGATCTATATGCCATGTTCATGAAAACTACCACCTCCTCTCTTTAAAATTT---------GATTGTTACCCAAAG------AAAAAtcattagaatttttttccattttccaatggTGAAACTAATATAGTAAAGTATCAA--------------------TCtcaatt---------tacatttaaaagaagTATACTGAAATG---GAATAATTAGGAAGCTTCCAGTAATAC----AAGCATAAATAGCatcatcaaaaaataattttccaagcTGCAGCCGCC

a score=25572
s chr3           150890114 646 + 160039680 TCTTCTGTTTTTGTTTTTTTATC-----TTTCCTACATTC---CATTTTCATACCAAACCACCCT-CAACCATTGAGTCCCAGATGGAGTCAGTC-TACCTACAGGACATTTTC---TTCTTGATCAGGTCAGTCAAAAACGTGTGCAGATGTTCAAAATATGACATATTTTATGAGCTTGACATTTTTACTGCATTTCCCCCTCAGAAGTTAATTCAGTTTTACTGTTGAAGAAAACTGTCATTTCCCTATATAAAAACAGCAATTTGCTGTGAAAACGGTAACATTCCTCCCTAGGGCAGAATGGTAGCTAGTGAATCCCTTACAAAAAGAAAGCAGAGATGTGGCATGCTGCTATCATTTTAATGGGAGCAGCCTGTTAGTCCTTCTCCCCCCCCCCCTTTTTTTTCTTTCTCTTTTTGGAAGAGTGGATTTTATAAGTTCAAGGATAAAGCAATTGCTGGGGTGTGTCTTAACATTCCTGGAAAATAAT-------TGCCTTTGTTTTATATTCTGAATATGGTAGTAGACTGCAGAGAAACCACATCAGGGAT-GGTAGTGATGGACCTATTAAAGCCTGTCACTTTTCAAGCATTTATTGGAAAAGATTTGATACATGGTAAATAGTTCAGTCTTTGATCTTTTAGTGTTTTCCATGTTCA
s HiC_scaffold_1 137542749 648 + 233722169 TCTTCTGCTTGCATTCCCTCCTCCCCATTTTCCCTGACTctgccagccccacccccagctgTCCTTCAGCCACCGAGTCCCTGAT----TCACTGGTACCTTGAGGACAGTCTCATTTCTTTGGTCAGGTCAGTCAAAAACATGTGCAGATGTTCAAAACATGATATATTTTATGCGTTTGACATTTTTACTGCATTTTTCCCTCAGAAGTTAATTCAGTTTTACTGTTGAAGGAAACTGTCATTTCACTCTACAAAAA-AACACTTTGCTGTGAAAATGGCAGCATTTTCCCCTAGGGCAAAGTGGTGGGTTGCGAATCCTCT-CCAAAAGAAAACTGAGACGTGACATGAAGTCATCATTTTCATATGAGCTGCCTATTTgtc---ctccattttcttttttttttttttttttttttcagcacagTGAATTTGATAAGTTCAAGGATAAGGCAATTTCTAGCGTAAGTCCTGA-GTCCCTGGAAAAACATCATACGctactttttctttatattctgaaTAGAGTATGAGGAGATAGAGCAAACAGATTAGAGATCTACACAACTGGAAATATTAAAACT-----CTTTCCAAG-ATTCACTTGCAGAGGTAAAGTACTTGACACACAATT-ACTCTCT--CCTCTCAGTATTGTCCCTTCTCA

a score=21036
s chr3           150896038 1046 + 160039680 AAAAGTTATTTTGGTATGACTTGTATTTATTAACATTTTAAATT---------CTTTTAAAAAATTGCCTAATGGTTTATGTTTAGTCCCCTCTGTTATGTT------TAAAGGTTGCTTCTGTCTAGCAAAATGGCTGTTTCCAACCTCATTTTCTTTTAATATAAGAC---AGATGCTTAGAATCTCTACAACAAACTGAATAGGCCATTGAGGTAGCAAATATCATATAACAGCTGTTTTGAGA-ATGGTAGTTCCCATCCTGCTGACACAGAACATGGATTGCACACTTTCTCAAAATCACACATAACTC-TTATAATTGGTAATATGGCTTAGAGGAACCTGGAAGTTGATCATTTGTATGTCAGATTTCAGCTAGCCACATTAGTGGATATAAACAAAGAAAAATTTCCTAAATTTAGTACCTATCCCATTGAGACAT---GGAGGGTAATATTTGATAATGGATATGCTTGGCTAGAGTGTCCAGAAATCTAAGACATGAACAAATGGTTAAACAAAAGTTAAGAAAAAAATTTTAGC-AGACATGAAAGAGAATTTTCTTTTGATAAT---ATTTTTAGCTCATGTTGTGCACTTGAAAGCTCCCAACCAACACAGGCACACACATAATGATTCTCTAGCTTCAGTTATATTGTAAATGAG-TAAACTAATAGCTGAAATTCTTAGGAACAGTATGATTTGTGCAAATGGTTAGTGTAAATTTTACATTTCATATCA-TAGTTTCAATCCCAGGCTCTGGATCTCCTAAGTGGCTGTGATTAACCAGGAGTCTAACTTGCGCCTTCTGGGAGGTCCCTCTCCCTCTCAAGGCAATGATTTTTCATCA-TTTAGTTGGACTGCATCCAGTTTATTTGGCAAAGATTCCATCAGAGCATGCTGTAGCCCA-TGTCCTTCCTTGATAATATGCTAATCACAT--CACGAGTTTCAGAGCTGACTACTGTGCTAAGCATACTCTT--AAAGTTTGCAATGAATGTGTCTTTTTTTATAAAAGAT-ACCCCCAACCTATAACATTAAGAAAACTCCTTATAGAGAAATGCAAGTCttta
s HiC_scaffold_1 137550464 1036 + 233722169 aaaaatgttttccctattattttcatttgttaatatttcaGGCTGGCAAAAGGTTTTTAAATGAGTCCTAGATTACACATAGTCAGT--------TTATGTTAAATCATAAAGATCAGGGATACCTAATGAATACACTATCATTGACTTCCTCATCTT--GACTTCAAACTATAGACAATCAGG-TCTCCACAACAAAGCAAACCAGCCTTTAGGATGACACAAATTCCTCACAGACAGTTTTCAGATCTAATGGTTCTCGTTATCATGACACAAATCATGGCTCATTTACCTTCTCCAAATGACACATAACACATTTTCATTGGTCTTAGGACTCAGATAA--------------TACATGTATCTCAGAATTCTGTTGGGTGTAGTccaaaatgtaaactaaaaaa----cTCCAAATTTAGCGAGTACTCCAGTCATACATCCCTGCATTTGTCATTTGATATTGTACATTTGTGACAAGTGAAACACACAGGCTAACACAT----AAATTGTTTAatgtgagttaaaaaaaaaatcctattgaaACCTGAAAGCCAATTTTCTTTGGATAATGGCATTATCACCTCA-ATTTTCAGGAGGGAAACACCATATTAACTTAAAAGTACAGATAAT----CTCTGGCTTTTGATAATCTTTAAATGAGCTAAGCTAATGCATGAGGTTTTTAGAAA-AGAATAATTGATGTTAATGATTAAT-CAATTTTCAGATTCGGGGTCACTATGTCCAACGCCAGGGTCTTGATCCCCTAAGTGGCTGTGATTAACCAGTGATCTGACTTGTGCCTGCTGGAAGGTTTCCCACATGTCCTGGGCAGTATTATTCCATCAGGTCAGTTGGATTGTATCCAGTTTATTTGGCAAAGATTGTGTAGGACCATGTTGTGATCCATTATCTTTCCTTGACAAAGATTTAATCTTGTTGCAAGAGTATCAGAGCTAGTTATTATGCTTGGCACACTACTGCAAAATTTGGAATGGGTACTTC-ACTTACATGTGAGATGATATTtagcttaag-----aaaaaaaatcttgacaGGGACACATCAGTGTTTA

a score=18965
s chr3           150898420 1235 + 160039680 CTAatttagtaaaatgtcattaaatttcaggcataatgcttcatataacaaaatttattactatttaaaaccttgacagcaatgtgtgaagtgaaataccacttttaaacaatcaattcatcc-ttagcgtgtatttttcctctttaaatatcttgattgt-tgtaattatgctgtaataattatgggcacagtaatggttccttaagtttc---tgattctggttct---tagagatgagaattccaaactgtaatgcgtccatcactgcatgtcagctctttatattttattttgcatgtggcctctgt-actgtttcccgtattgaatatactatatagttacattTTTTGTTCATATGGCAAATGGCCTTGGGTTTTGCATACATATGGAACAGGGGAGGGCTTAGACGTATTGAGTATCAGAGCCGCATGGTCTACTTTGCGTTTAGAAGGGTGATTTTACTTTAGGCAATAGGAAGAAACTTTAGAAGGGCAAGATATGAAAG----------------------------CCAGAGTCCTCA--------CCTATA------------ATATTCCAATCTATAAGGCTTTATATGGTAGCTAATGTGAGAATAACGGGGGGCATTGTGTTCAAAGACAAGTTATTT-TAGATATCCTTTCACAATAGCAGGGATTATCCAC-TGACTGGGTACCTATAGCCAAGCAAT---TCATCACAGTTGTTTAATCAAGATGCAGATTTATAACTATAATTTAAAGAACAGGAAACTGGGGCAGAACTCAGAACCTCGCCTAACCTGATTTCGATGACCATGATTTCAGTCAAACCGCACAGTCTCATGAGGTCATCAATATTC-ATCAGCTCATGTTCCTCCAGCATCCCAAATATACTCAGTCCCTTCTTAATTATTAA-CAACTCATCCAAGAAAATGATGAAAATAAGATCCCTGAAGACGTATAACACAAAGTGACTGGGTGAAGGATGCA------------TGGCAGACACTTTGCTAATGCAAAACAGATAAATTGCACATCAAATTTGTTTCATTTCCATTTCTCCAAAATTGGAAA-ATGACTTCTACAAGAAGATTCATTATAGTAAATATCCATTATAACAAAACAATTTTATGGTCTTTAAAAGGTGATGGCAAGTTGTACATAATGCTTAAAACACTCCAA--TTTAAAGGTTCTCTGTCCCTGGGTCA----------CTAAAAGCTTTCTAAGTGGAACTATGATGATTTC-----------AGCTAAACAGCATATCTC-----CAGCCTTACACTGCACATGCAAAAGATGAGGGAACAAG
s HiC_scaffold_1 137552804 1306 + 233722169 CTCATTCAGTTA--TGTCCTCAAGATTCAATTATGTTGCCTCaaatttcatgatttctttcctttttaaggttAAATAATATCCCACTGAATgtatgtctattttttaa-aatttgttcatccATCAATAGACATTTAGATTCTTGCTATATCCAGGTTATATTGAATAGTGCTGCACTAAACACAAACATGCTAATGAATCTTCCagtcttatttgttttttgttttgtttttagataaaTATTCAGAAGTGGAAGTATTATGGGATGACATATTAGTTCCATGTATCTTGTTTT-CATGGAAATTCCACGACTTTTTTTTGCAGTGGCGACAATATACCCATACTTGTTATATCCCTACCAATAATTTACTGCAACATTTCTTACATCTGAGAATGTGAAGCATGCAGGGGATTTGAGCAGAGAAGTGAGACACtgtgatttatatttaaaaggaTCTTCTTGGCTGCTGTGTTGAGAACAAACTGTAGAGGGACAGGAAATGGAAGTGGGGAGTCAGTTAATGAAGCATTCAAACAAATGTTCTCAAGAAGTAACCTCTATCTGTGTTACCCACAGTTTGAACTGTTAT-TTTCATATTGTAGCTAGCGCAAGGATATGAGAGGAAAGCTAAATTAAAGATGAGTTCTTTGTAGTTCTTCTGTTATAATCCATAATGTCACTTACATGACTATGTACTATGAGCCAATCACTATTTTATTAGAATTCTT-----AAGACATTTTTTTATTACTTCAATTTTGGGGACCAGAGACTTAGACATA-CTTGAATCCATGTCTA-TCTGGT--------CCATGCTTTCAATCACACATCCCAGTATCAGTAACTCTTCAATATTCCATCAG-TCAAGTTCTTTAACCATCCAAGACATA---ACTTCCTTCTTAATTGTTGGGCCACACATGTATGCCAGTCATGTAAACCAGATCTCTGAAGAGG----AGATGAAGTGGCCAGACAATATACACACCTTGTTTCTTCTTGC-----CCTTGATAATgtgaaataaatgcattttctgTCAGCTCTGTTTAATCTCCATC-CTCATAAGTTGGAAATATAACTTCTAGCAGAATATTCATTACTGAAAATATCCATTATAAAGAAATAGTTTAAGAGTCATCAAAAGATGGTAGGAACTTACACATAATAGTTAAATTTCTCCTAGGTTTAAAAGCTATCTTTACCTGGGTCAACCAGTGTCGCTAAAAGCTTTCTAAGTGGAGCTGTGGCAATTACTTTAACTTCCTAGGTAATAAGGGTGTCTCCCATACGGCTTTCCATCACACATGGATAAATACAGGGAAAAGG

a score=47602
s chr3           150904844 2064 + 160039680 TTCACCAGTGGGCCAGGCAA--TAAAGTTAGAGAACTGCTAA-------------AGTGTATAAGTCTTTAAACAATCACTCTTCATGGAAGGTTTGTCTTATGCATCAGGACTCAGAGAGAGAGAGAATTTGGTTTTACTCCTTCTTTAA-------TCAAAGAGAACTGAGAAGGAAATCATAGCATGTGAGGCTCTGTGA-CTGCCCT----CAGCACCATATCTGCCAGGCTCCTGGTGTCCCAG----------------CGCAGTCAAGATTAGAGTTAATGATGGGTTGGGATGCTCTCCAGCCAGCAACACTGATGTCTACTAAAATTTATTGCTCCCTAAGAGTTTATGACAAGGGTCTGGTGAAGCTATCATCAAATCCAATTAAAAATCTTATTTCTTCCATGCTGGGAAAAAAATCAGCAGTTACACCCTTTGTTCCACTGTTGCTAGACCACAGAGTTCTACAGAAAGTATATCTGACACGGTCTAGTCTTAGAACATGCTTGCAAGCAAAAATCTTCTATCCTCATGATCAGACAAGGTTT--------------ATTTATAGATAAATTTGTCTCCTCTTAAACAA--ATAAGATGACAAGAAGTGAAAATGAAGAAAAATAGCCTATCTATTCCT-----GTTCATGTAAACAATC----------AGGACATTTTCTATATTAGAAAGAAAACCAGAATGCAGTGTAAAGTGGGTCAAGAAGGACTGAAG--CTGCACAAATCTCAGGTCTGTCATAATTTACAGGACTGTTTCTGATTTCAAAACTAGCTTTTGAAAAAGGGTCAAAGCAGAATGCCATGTGATAATGTAATTAAAGACATTTTCA-TATCTCAGCAC-----TTGTTTCACTTTTCCCCTTGGAATGAAAACTGTGTAGGCAATTAGTTTAAATTAGGCTACGTGGGGATATTATTTGGATAACAAAAA-TAAGTTTCTCTTTGTAATTAAATTTAATGATGTTTCACTGGAGAGAGACTGAACGAATTTCTAAAACTTATGGTGCTTTGGCCAACTCTGTATTCTGAAATAAACTGATAGAACAAGTCAAATTGTTATTTCCTTGACTGGGGTGATCTATTGAACATGCTAAGTAGATGCTTCTAGATGCTAAGGAATTAAAGGAAGTCATTATTCTCCCAGGATCCTGTAAGTT-------------GCTCATGTCTGTGATGCTAAAATCATGCTC--------------------------AAGAACCATTGCTC-----------CAGCTGCCCACAC------------------------------ATTCCTATCCTCTAAA-GCTTGTTCATGAAATAATCATTCACCAAGAGGAGCCT----TTGTGTAGTATACAGACACAGATGCCTTCATATCC----ATTCAAAAATTTATTATAAATTATGTGGAAAGTATA-TATTTAAAAGGTTTTAGAAGCTGGCGTGTATAACTTTCATCATTAGAAGATATACTGAAAGTAA------TTGATATTTCTATGGCATACAAGATCCTGATTTGATTCACTTTTTCTATATCAAGCTCTTAGAAGCCTTCGGAGCTGTTTTTCTGGTATCACA-------TCTATTGATTTTACTTGGAATAAGTTACTAGATAAATTTGCAGAAACAAGAGACTTTGGTGAATACTTTAA----GATTCCCATCTTCTCTTATTTTCACTAGGTCACATTTTGCAGATTAACACTAATCATTTTGTTTTGCTAATATCGTCTATGTAATCTATTAATTTAAAGGAATAATATACCACAGGACTGTTTC-AAAGCCAAGTGGATTAATGCAATTAATTAACAGCTGGTAAGTATCATAACAATGAACAGGTAACAGTTTATGTTAATGAAAGTAATCAGTCAACATATTCA--GTTTTT--TAAGGAAATTGGGGGTGG---AGTTCAGAAAGAAATACAAATGTCAAATGATTATATTTGCATCTTTATAGCTT-TCTGTGAAC--ATCTGAACCTCTA---GAGTACCACTCCACAGAGAAGAACCCACATGACCAAGATTCTTGCTTGCTGCTATGCACTTTTG----AGACCATTCCTAGGCTTGAAA---------TGCATTGGATACCTTGAAAGGGTCTCTTCAGTCTGAACCAAGAACTAAA------------ATTACATTAACTTTTCACATCTCTGCCCAGTCCTTGCAAT----------GTCTGGTAGTTTTCATCACATGTATGTTTTGTTTATATAAATATT
s HiC_scaffold_1 137556662 2212 + 233722169 TTAACCATTgggcaagaaaaatgaaagttctgGAGTGGCTAACATACTTCACATTACTGTAGCAGTCTTATACTAATTACT-------------GTGTTTCCTGCCCCGGAACC--AGGCGTGAGAAAATTTGGGTTCCCTTTTCCCCCAGCTCTGGGTTAAAGGGAACTGAGGCC-AAGCCAGGGCACATCTGACATTGCAAGCCACTGTATGGCagcttctt-tttccccttccactGGTGTCTCAGGAGTTCTTCTCCTGCCAGTCATCAAGATTTGAGTTAATGATGGGC-GGGATGCCCTATAGCCAGCTTTACTGATGCCATTTAAAAGTTACCACACTGTAAGAACTAGTGCCATGGCTCTGGTGATGCCAAGGCTGAATCcaattaaaaatcttatttcttc-aCGCTGAGAGGGAAACTGGGAGCCCAGCCCTTTGTTCCAGTGGTGCTACACTACAGGGTTCTCGGCAAGGCACATTTGACACTGTCTGGTCTTTAAACTGGCTTTTGTGCAAAC-TCTCCAATCCCCAGGCCAAGCTCTGGTTGTTTTTTTACCTCCAGTTTATAGACAG-TCTTTCTCCTCCCAACAAATAACAAGATAACAAGTaatgaaaaggaagtaaaatagc---TCTATTACTCACGCACCCCTATAGACActctgggaaaaaaaagatatattctaCGTTAGTAGGAAAA-----ATAACTAGTAAAGTAGGACAGGCAAGAATGAAGTTCTCTACATATTGCAGGTATGACACAAGTTTCAGTAACATTTCTGATTTCAAAAGTAACTTTTGAAGAAGGGTCAAAGCAAAATTCAACATGATAATATAATTAAAGACATTTTCAATAAGTCAGCAcctagtttagtttagttttcccCTTGGGTTGAAAACTGTGTAGGCAATTAGTTTAAATTAGGCTGCGTGGGGATATTATTTGTATAACAAAAAATAAGTTTCTCTTTGTAATTAAATTTAATGGTGTTGCACTGGAGAGAAAGTGAACACATTCCTAAGACTTACACGGCCCTCGTCAACCCACTGCTCGGAGACACATCTGTGTAACAGGTCATTTTGCTGCTTCTTT------------------AACATGCTAAGCAGACTCTTCTAGCTGGTGAGGATTTAAAGTAAATCATTTTTCTCTGAGGCTTGTCTGAGTTCTAGTGCTTCTTAGACTGTTTTGATGTTGCTAAAACCTTGCTTTTGTTTGAGTCCTGCTAAAGAATAAGAGGAACACTTTCTAATTACTATGTGTATCTGCATATACATATGAATTTGAGTGTGACACTTCGGAATTATTCATATACATTAAACTCTTCTTTCTAAAGTAACTATTCCTCAACAGGAATCTAggcatgtaaaatatttatatatgtatatccaCACACGCACATACTCAAA-----ATTATAGATTCTGTGTACAGttcattatttaaca--ttttacaa-ctagtatgtgtaacttttataattataaaatgtaacaaatggaaaaatgtttGCCATTGCTGTGGCATAGGAAACCTAGATTTAGTTTGCTTTTTCTAGATACTGTTATTGAAAGCAGATGGAGCTGGCTTTCTAATATCAAATTCTCTTTCTGTTGACATTAATCAGAATAAGTTATTATATA----TAGGGAGGCAAGATTTTTTGATGGAGAGACAGACCTGGATTTCCATTCTCTGTCA--TCCACTAGCTTAATATTT-----------CTGGTAAGTTAAACTCTCCAGTAATAAGTCTTTGATCTATAAATTGAGGGAAATAATACAC-----aattgttttgaaaagaaaatgaattaacatACTGAG--------TATTAAGTAGAGTTATAGCCAACAGTTAACAGTTGATATTAATGATTATAATCAGCTGCTATTTTCACTGTTATTAATAGGAAAACTTGCAGAGGGATAATCGAATGGGACATAC-AGCATTAAATGATGATGCTT--AACTTAGTAAATTCTCTACCAACTACTCTGTCCTTCACAATGATTAAAGGTTCATGAAATGGTTCCCAAATGGACTAGGTGCTTTAGTTctgttgtgtatttttttcccagACAATTCCCTGTTCTGGAAGTATCCTTTCCTATTTACTGCCTAGTAAATGATTATTAATGCCAGACTCCAAATTTAATGTGCTGATTTTAATATGCTGATTTTACAAAGCTATGTCCTCTCTTCCCAGCTGTGCACCTAGCATGCTGATTTTCATCA---ATATATTTTGTTGATAAATTTATT

a score=5603
s chr3           150907592 150 + 160039680 cAACTCTTCTGGCAGGGAGCATCTGCGCACTTCAGGCATCTAGGGAAGAGAATGACTATGTTCACATAATGATAAAGAAAATGACATTGATTTTCAT-----TTGTTATCTTATACCAATCCAGAGTTAATTTTTAATAAACACAACTAAAATTA
s HiC_scaffold_1 104433404 152 + 233722169 CAGCTCTTCTGGCAGGGGGCATCTGCACATTTCAGGCACCTGAAGAATACAATAGCTA--TTAATATTACTGCAAGGTAACCAACATAATTTTCtatgtatattttcatcttataTTTATTCAGAGTAAATGTCTAG-aggtataaataaaatta

a score=24441
s chr3           150910795 902 + 160039680 AATATGTGTAATCTTCCAAAATATCAGTTAAGAGTCAGCTCTTTGTGTAGCAGTTTATATTTGGAACACAACTTCCTGGTCTATATTT-------TTATGACATAGGCTGCTGTTGAGTCAAAGAGTATTTTGATCAAGTTTCACTAAAACAAGTAAGCCTATAAAAT------GTTTAGACCTT----CCCAAGATAGCATCCAAAGTTTT----AGAGTAC---TATAGAGCACTATTCCCAATCTACTATG----ATAATCTGAGTATGTTACTACA----AATTCATGTATAAGAATTCAATATTTATTAGAATAATTACAATGAGGAATCATAGTTCCTAGAATTCTTCAGAATATTACAAATAGTAGCATTATTGATTATGATCAGATAATAAACAGTTTATTTAA--GTATCAGAGTACGTT-CTTATGGACTTTATTACCCATGGAAAAAACTAAAGGAGCAAAGCACGAAAAAAGTTAATATTTTATGATAAGGAGTTTCATTTATTGAAATATTCATTTAATATACATTTTGTTTTATTTAATATTGATATACTTAATAGATGATGTATTTGATC-AAAACTGCGAGCTTAAATGCAGAGTCCTAATTAGCAGGCAGTGGACATAAAGAGGAGAATGATGTGTCTGATTTAATAGA--CTGAACTACATCTGCTTCTAAAATTGATTAGTCTTTTTATTGAGAGATTAATCCATTTCAAAAGGTGATGCATCTTTAATACGAGTTAAATCAAATCTATACTTTCTCCCCCTTAGTCTGCAAAGGTAACGAGAGGAACAAGTTTGCCCTCAAGTGGACTTCAAAGGCAGATCAGAGATTCAAAGAGCAAAAAAACCAAAACAAAGCGGTATCATGAGTTCCTGTGTTCAGATCATTATAGTGAAGGATAAACACCATGTCCTGTTTCTTTT
s HiC_scaffold_1 137562191 913 + 233722169 AGTGCATGTAATCTG--AAAATTTCAGCTGAGTTTC----CCTACTCTAACAGTTTATATTTAAGGCAAAACTTATTACACACTGACTACAGGAGTTATAACACTAATTTCTAATTAAGAAGAAAGTAC----AACAAAGTggacagaaaacaataaacatgGCATATACTCTAGTTTCGTTCATGATACTCAGATTAACAGCTAATTTTCTTAGTAGCATATACATATTGATGACT--TCAAATTCTGATATGggaaatatttaaattgtgtttttgGAGTTCAATTCACTTACAAGGAGTTGCCTTAT-TCAGAGGGATAACAGTCAGGAATCATAGTTTctataatttttcagaaaataataagTCATAGTAATATTTATcatcttcaaaatataaaaaattaacaagatgGAATCTAAACAGGCCACTTATAAACTA----ACTTATTAAGAAAACTAAAAGCCAAGATGACTCATTTA-TTAACCTTCTACTATAAA---TTTCACTTATTGAAGCAGTCATTtaatatacattttgttttattctatattGCTACATTTATAAGATGATATATTTCATCCAAGACTGGGA-TATAAATGTAACATTCTAATTAATAGATCATAAATATTTGGAAGTGAATAATGTCTGTGATTTAATGGAGGCTGTATTATATCTGGTTTTGAAATAAATTGGTCTTTTTATTGAAAGATTAATCCATTTCAAAAGGTGATGCATATTTAATAGGAGTTAAATCAGATCTATACATTTT---CCTTAGTGTGCAAAGGTGAACTAAGGAACAAGTTTGCCCTCAAGTGGACTCCAAAGGCAGATCAGAATTTC--CGGGGAGGAAGGGTGAGGAAAGCTGGGACCATGGCTTTATATAGTCAGATTCACAGAAAGGAAGCTAAATAACATTtcatgttcctttt

a score=16987
s chr3           150919889 483 + 160039680 CCCCACAAA-----CCCCAAT-CTAATTCTGACAGGTATTTTCCTATCTCTGATCATCTTTCCACATTGTATAAGAATTTACTTTGGGTATACACTGGCCAGTATCATTTACTGTTATTTTACTCTCT-------------GAAAAACCAGCTTAAAACCCTTGTTCTCCATTTTGTGAACTTTATATACTAAAATTTCTAAAGGCTTGCTTCATGGAGAAATGAGTTTAGACATAATGAAATTTAATGCTATTTTTGTAACACCTTGGTTAACCAG-ATTTGTTCTGGCTAATTGCACCTTTAAATAATTACA--TTATAAATGAATTATCCTCTCTTAAAGTGATGTCAAAATTATTTTCTAT-TCAAAAATATTAGTTCATTTACTACCTTAGTACT-GAAATGTACATTCAAGTAATTGTATCTATGTGATAATTGATAATTTAATAGCTTAGTGAGACCTGGAGAAGGTCTCA--ATGAATGTAAATTCTCAAAATTATATTGT
s HiC_scaffold_1 137567078 507 + 233722169 CCCTACAAATTTTCCCATAATACTAATTCTCGCAGATCTGTTCCCTTCTCTGAATATTCTACTGTTTTATAAAAGTAAGCATTATGAGTATATGCTGATTGATATTACTCATgttttttttgtattcattattCAGCTAAAGAAATTTTAGCCCAACAttcatagtataatttttaaaatgtctctttaTCAAAAATTCTAAAAGCTTGTTTCATGGAGAAATGAGTTTAGACATAATGGAATTTAATGCTTTTAAAGTAATACCCTAATTAACCAGAATTTGTTCTGGTTAATTGCATTTtctaataattacattttataaatgaattctACACCTTTAAAATGTTGTTGAAACTATTTCCTTTCTCAAATGCACTAGTTCATTTACttctttaataagaaaaatataggtGAAGATAATTGAATCTCCCTGTTAATTGATAGTCGAGTATATC--TAACACCTGGAGAGGTTCACATGCTGAAGCTACATTCTCAACATCATATTGT

a score=13666
s chr3           150930805 508 + 160039680 ATTTTTACTTAAATTTATGGCTTGTT--GTGGACTCAAATCAAATTTTATTTTGTCCTTTTTCCTTTTGTAAAATATCTCATCATGTATCAAAAGAAAATCCCTTTTCTAATTTCT-ATAATAT-TTGTCAAGGAAAA---TTTTTTTGTACATTGCTAGAAGTATTTAATTATGACATCTCAATATAAAATGGACCACAGCAAAATTTGGCATCATTTTATTTCCATATTGAGCAGGTATTTATATACCACACATTGGGAGGACTCATGTGCCATCAGAAACTCATAAAAAGGGAAAAAAGAGTTTATATGTAAAACT--------AAAAAGAGCTTATAGGTT-TTTGACatttttatttttg-atattacaattttttaaattttaCTCATCAGTCTTAAATGTAGCAATGCAAGGTTAGGGGATGTTTTCCCTTTCCTTTCTCTATGGACATTAGCTATACAATTTACACAGGTTCCCTA--TGTTCTACTATTAATAAGATCTAAATGGAAAGATATGTGTT
s HiC_scaffold_1 137569402 506 + 233722169 ATTTATACTTGAAAGTGaagtttattttatgaatt----ttaaaacctattt---catttttacttat-tagATTATCTTCT-ATATA-------AAAATCTCCTTTCTAATTTCTTGCAATGTATtgccaaagaaaaatattcctatGTGCATTGCAAGAGGtatttaattatgattttttaatataaaatggcCCATTGCAAAATTTGGCATAATTTAATTACCAGATTGAGTAGATCTTAATATAACATACTGTAGGAGGACAGACATGCCCTCAAATACTGGtaacta-ggaaaaaataatttatgtg-aaaactaaaaaaaaaaaaaaaaattctagtttaTCTGATATTTTTATGTCTGAAAATTAGagatctttttattctgtttataaCTCTTTGCTGT--TAATGTGGGATGAGAAGtgactggctttttcttttttctttgaatatcagTTACAGAA-CTGCTCATATCCCTTGCTTATTTTGATCTATAGAACAtctaaaatgaaatgtttttgtt

a score=7097
s chr3           150933453 262 + 160039680 aaaCATTTTGTTGCATTTGAAGAGGAAAAACAATTGCTTAGATATCCTATTTCTGTCCATCAGAACTGACCACTCA----TTCTTCAGCTGACTTCAAATTGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCTTGCTTGCCTGGGGCTTCCTATGAGGCTTTGGGAGACTTGTTTTCTCTGATAAAAGTAGGCAAAGTGTTAAGACATAAACTCCTCTGGCATCCCCAAGGCAATG
s HiC_scaffold_1 137571180 218 + 233722169 AAACTTTCGGTAGTGttctaagaagaaaaatactgaCTTATATGCCCTGGTCATGTCCATTGGACCTGACCACTTAAATATTCTTCAACTGACTTCCA---GCTCTG---------------------------------------------GTGTCTATAACTGTTTGCCTGGGGCTTCCTCTGAAGATCTGGAAGGCTGGTTTGTCCTCATACAAGCAGAAAACGGCTGGAAATGTACACTCCTGAGGCAGTCCTAAGGCAATg

a score=30083
s chr3           150942286 2055 + 160039680 CATCATGCACAAAATAATCTAAATTAACT--TCTTTTTCTGCAAAGGAAATGTCCAGATTTTATTTCTGGTCAACTAA----------------CTATAAAGGTCGAATATTGCTACAGCCTTTT-TGTGTAACTTTGGAAAAAAGTTATTTCAGCATTATCACTAATTTATTAGTACAAA-CTAGCTGATTTCCCCAAGGTTCTTAAAATTTGTAAA-AGAACTCAAGGCTTCTGAAGCACAATTATTGGAAAACAAGGGAAAATGCTTAAATTGGAATAAATGCAATAATCTTCATCAGACTTCG---AAAACTACAATCAATTCAAATTGAATAGTCTTGATACAGTAAAACACAAGATGGAAATAAGCTTCCCAGATTAGTAGTTTATGTGTATGCATATAACTTAATCCTGTTTAAAATGACACAGAAACTGTGAAATGGATTAAGGCTTTATGAAAATAAATAATTCGTATCTTAAATCACTAAATCATTTGTAAATCCCATAAG-ATCTCCAGAATATCAGAAGTTCAGAGGAATTTCAGATAAAGTTCCTGTGTACCTTCACCAGCAGGTTTGCTCCTAAATGCCATATAATTTGCAGAAT--------GTGCTGCATCATAGGAAATCTGAACTGATTTCTGGT-TTCAGCCTGCACTGGACTTTG-ACCATGAAGTGACATTGATGGCCAGTTTAGCTATGAATTCATAGCATATATGCTGGGACAGAAGTCATATCTTTGATAATGTACCTTCCTCAAGGGATTTAAGGACAAAGGTAAAGGGGGCTTCTCATATGAGGAAACAAG--GCTGGGTGAGGGACAGCATTTGATTAGGTAAATTTAAA--TGCCTGTTCTTCAAAGAATGG--------------------------------------------------------GTAGA-CAGATGC-AGACTGTTTTCCTGGCACACTCAGATGCCCTGATATAGTTGGTTTGTTTTCTCCCT-CGCTCTGCATCTCAGGGGAGACACTGTTTAATTTCCCAAAGGCAAGAGTCATCTGCAGATTAAAATCTGTGGAGTGTGAGCCCAAACCCATTATCAGGAAAATATGAAAGGTTATGACATAAGCTTTCAAATGAGAGCACCTGTAGACTAGTCATTGTAGTCCCATGTGgggtttagagagatggctagggacacttgaggggttaagagcactgggtgctttcatagagcaggacctacatggcaggtcaaaaccatgggcaactctaatttcagggaccctgatgttcactttgctgtccaccctgcccaaactcctcacaccacatatacatgcatataagacaacaccctatatgtgaaatatatgtaaaataaaCATAGTTGTCTTTTGAAAATGAAACCTTTGTTCTCAGGTTTGTTCATTTTCATCATGTTTACTTTTCATAGAAGCCCATTTTTCAGTCCCATTCTAAAACATGCTTGTACATTTCATGGACTCATTTGAGGAGTCTAAGAGAGGGAATGTTTTATATCCCTTTACTTGTAATA-TACTAGTGAAAGAA-TATATCTCAATAGAAGACAACTGACAAGATAAATGAATTCAA-TCATATGTACTTGATATTTTTCAAAAATTTCATTTTAATTATTGACCAATAACACAGCATTGCACTACTG---------TATGAACATCAATGAGAGAAAAACATTCTTTTTGTCTTTATATCACTTACCTA---AGAACCTTTGAAAAGTTTTTCTCCACTCACTGACAT-AGATTTAA----GATCTTCTTGGATTTATAGAAACTATCATCATAAAACTTTTATTTAATTGTATTTTTATTAAGCAAAACTAATCTAATCCAAAATTCAAGAATTTATAACTAGACAATATAGCTTTATTTTTAATAAAAAAGGAAATCAAGTTTTGTGCCATAAACCAACCCCTTTATTCTATGATATTAATGAGAGATTTTATGAGGAGAGACATCTCACTGCTCCTGTTTCTGGGCTACGGGGAAA-CGCAGTGAAGTTCTCCCTCCGTCCATTTTAG--ATATTTGATTTTCTGCAATTTAGCATCTACAAAAATGACCTGAACTATAAGAGGTTATGTACAATAAAGTTACCCAAATGCTTAGAAATTAAGGATTTTGAA
s HiC_scaffold_1 137581331 1781 + 233722169 CATCATTCGCAAACT---TTAAATTTACAAAGCTATTTCTTTCAGGAAATTGTACAGACTTAATTCCAGGTCAAGTAAAAACTTACTTTATTACCTACAAAAGTAGAACATTGCTATAGCCTTTTATGTTTCATTT---GAAAAGGTTATTTCAACACTATCATTAATTTATTAGTATAAAACTGACTAATTTCCCTaaggtttttaaatttcaagagtaCAACTAGAGGCTTCAGAAGTGCAATTATTGGCAAAGGAAGAAAA--TCTTAAAGTGGAATAAATGTAATAATCTTTGTTTGACTTCTCCTAATATCACAATCAACCCAAAGAGA-------------------------------------------------GCATTTTATCT---TGCACAGAGCGTAA-------------------------GTGAAAC------------TATGATGATCAGTCACACGAACATTTTATTAC------GTGTGTA-----CATAGGTATATGCATA----------TGCATAGCAACTTCAGGTAAA-----TGTTTTACCTGAGCCGC-----TGCCTCCTAACTTCATACAATCTGGAAATTCAGGCACAGGGCTGCATTATATGCAAGTTTTGTGGCTTTTTGGCCTTCAGAATGCTTACAACTCAATACCATGTAAGGGGAT------CCAGAataacaaagaattt-taaaaagcatgtttgGACAGATGTCATATCTGAGGTTTTGTGTGCTTCTCAGTTGTTCATGGAACAC-------GGAGGGTGTGCAAATAAGAAAATGAGCATTTTGGAAAAGCACAGCTACTGATTGGGCAAAATTCAAATTTGCTTTTGCTAAGAGAATGACAAAAACATTGAGAACCTTGCATCTTAATACCTTGGTTCTTATTTAATACCTTTACGTAGAACACATGCTGGGCTGTCTGCCTGCCATCCT---ATG---------GGTTGGTTTGTTTTCACCCTTCCCTCTGAGTGTCACAGTGGATCTCATTTAAATATCCAAGGACAAGAGTCACCTCCTGA------------------------------------------ATATAAAAGTTTATGTC-TAAGTTTATGTTTATGAGAACTTGTA------------------CATATGG----------------TGAGGAtaataaa-------aaaacacagaat------------tAGGAACCAAATG--------AAAGCATTCAC----------TGAGGAATCATAAGGTA----TTTCTCTCCCTTTTG-----ACAGCTTACATTACATTTGT---TACTCAAGA-AATTCCATTTAT-----------------------TAGTGTACTGTTTAAAATGCAA------GTCTAAG---------------------------------------CATTATTGAG--CCATTTTAGAA-------------TTCAT---CTTCTTTAGTGGGTT----GGGGTGAATATTTTTTACCTTCATGTTGATAATAATACAACTGACAGAAGTGTGTCTCAATGAAAGACAAGGTACaa-atgaaggaaaacaacttaGATATATTTGAAagt---cagtattttcattttttt--------ggtaataTAAAATTTGACTattgaattatttatatgaaCCTCA-TTATAGAAAAATATCCTAATT----CTATATCACTGCTTTATTCAGAAGCTTTAGGAAGTTTT-ATCTGCTTACTTTCTTCAGACTAAAATGTGATGTTCTTGACATTACAGAAAAGAgcatcataaaa-ttttatttaatggcaTTTGTATTCAGAAAATGTAATGCAATTCAAAGTTTCAGAATTTATAACTAGAGCATATAGATTTAttgttaataaaaaagaaaatcaagttttGTAGCACAacccaaaatatttactttaagatattaaggaaaaattt-ataaggaaagacattttattgttaatgtttttagataaggaaaaaaatacgGTTATGTTCT---TCTGTTCACTTTAGGGATATTCAATTTTCTTGAATTTGGAATCTGCAAAA-TGACCTTAACTATAAGAGGTTATGCATAATAAAATTACCAAAATGTTTGGAAATTAAGGGTTTTAAA

a score=17295
s chr3           150954739 909 + 160039680 CATAGTCAAAACTCTTACC-ATTTGCAAACACCATGGAGCTAGTGGTTTTTGTTAAAATTTACTTTAATTTCTCA-CTTGAATAAAAACAG---------AGATAGTAAGAATAAAAGGTCTTAGTAAATTAGTATACATGGGCACTCATGCCATCTAAAGATAGGTTTTACTTGCAATTGGGCAACTCCCTTAACCAT----AATCCCAGTTGTATTTCCCACCTTTAAAAAAGAGTCATAAATAAGTCTATTATCTATAAGAAATTGACTCTGTCTGGGCAGACAGCCTGTATGCTTTCAGATAACTTTCAGATCTGCCTGCTTTCTCTACTCTGGCCTGCCTAGGCTACACCACAAATAGCAGCCTCAGCCATCTGGAAGCTGGGAAACAAACCTACTTCTGC-ACAGGACTGAGAACAGTGAT--TTTTGTCTTTAAATTT-TCTGTGTACAAGCACTTCCTCA-----------------CTGACTTCCATGAAACA-CATCAG-----------TGACAGAGAGGGTTCACTCACGTCAGAGTGTAAAAGCCTGCAGGCTAATCAAAATCCAGACTTCCTCAATGACCTTGTCATGTCAGTAATCTTTTGAGATACATTCTAAAAAACACCTTTCTAAACCC-----AGTGTA-AACAGGAGTGCCTGTTGAATTCACTGCAGATTGTGCTGGTAACACCTGTGCTTGGCTCCAG----------ttattaaaaaaaaaaaaaaaataGCTGCTCTTGGAAGTATGGTTGTACTGCAGTTGGTTAAGTCAAACTTCCCCAGAAG--------------AGAATCTGTATACCCAGGAA---CTCAGAATCAACTA-GTGTGGCTAGGGAAATCCTGAAAATTAACAACCAAGAAACCAAA-ACAGTGCACTGGCAGGTGCAAAGGACACCCAAAGCCAAATTACATTAGA-TTTATTCCTTGTCTGGACACGGGA-TTGGCTTTTTAA
s HiC_scaffold_1 137587993 941 + 233722169 CATAGACAAAACTATCACCCATGTGCAAATGCACTAGTGGTGAtggctgtttttaat-tttgttttaattcaagAGCTATAATAGTAACAGGAAGTAAAGACATAGAAAAACATACAGGATTGAGAAAAC--AGATATCTGGGCCTTTGTTCCATCTAAAGATAGCCTTTTCATGCTATTGTACAAATCATTTAACCTCTCTAGATCTTAG----ATTCTTCATCCTTAAAAAGG-GTATTAAATAAATCTATTATCTCTAAGAAATTGACTCATTGCTGGCAGACAGTGTGTATACTTTCAGATAAC-GTCGGATCTGTCTGGTTTCCCTGCTACAGCCAGCCTAGACTACCCCACAAATAGCAGTTCTAACCATCtggaagatacaaaataaacctGCTTCTCCTACATGTCTTAGATCAGAGATACTGTTCCTTTTAAACTCAAATGTGCATAAGCATCACCTAAAGGTTTCTTTAAAGATGATGACTTCCCTGTTCCAGCATCAGAGCCTCTGATTTGATGGTGG---------TACAGCAAGTTTTAAATGCCTGCATATTAATTAACACCCAAGAAGATTCAG----------ATGCAGGTGAGTCTCCGA-CTGTATTTTAGGAAACACTATCCCACACCTGACAGAATGCATAATCGCATAGCGTGTCTCAT---CTGCAGTGTGAGTTGTTAATGTTTGTCCTTGGATTGTGACTGTGATTCTTATTG----------------AGCTATCTGTAAAGTCCTAGGTGTTTAGCAGGTGGTCTAGTCTGGTTTTCCTGGAAGACAATATTAGGAGAAGAATTTGTGT----TGGAAGCTCTCAGGATAATCAAGGTGAAGTGAGGAAGACCCCGCAGGTTAA-AGCCAAGAATTCAAATATGGTGCGAGTGCAGGTGCAGAGAACTCTGGAGTGTAAGTTACACTGCACTTTGTCCCGTATCCAGGTAAGACACCTGGGCTTCTAA

a score=11591
s chr3           150956403 596 + 160039680 TCCTGGTGTTGCTCACTAGACCCATAGGCTTCT-----GAATTCCCAACTAGGATTTCTCCCTAGTCTTTTTACATTGCCCCAAGGGTACTGCCTGCTTACACAAGTCTAGTTCAATTCAGTTCAAACTAACTATGATTAATTGGAA--CTCATGAACTAGGTAAAAACTGG-GTTTAGGAAAACTAAGTCATTGTAATGGTGTAATGACTAAAGAATATGAATTTAAGTGACATTTTTAACAGTACTGCAGTTAGAGTTCCATAAAATTGCTTATTCAATTAATTTAATCCAAGGCACCAATGCAGAAGAGTC-------TGTTCTCCAAAGTCTATAAAAATACAATATCCTGCTTGGGACTATATAATGAACAT-GCTTAAAATAATTGAACAATTCTGAAAAATCAAGTTAGCAGTAGTCTTCCATGCTGCAACTGTCTTACCATGACAGATCTTAGGAGGCTGAGCCGCATGTGCATTTAGGCATAGCTACACAGCTGCTTTACATTGGAAATATTTGTATGCATCAAATAATGAA-----CTGTGTGACAGTTTTTACATTCACCTCAGATGTTTGAGATGTTGTTA-ATAAAAGTACCATAAATATACTCT
s HiC_scaffold_1 137589456 593 + 233722169 TCTGGGTATCACCTAGCAGACACACACTGTCCTTCTGGGATGTTCTGATTGAcatttcattcttgttttcatGGACTTCTCTAGGACAATTGCCTGCTCAAACAAGGATCGTTTAATTCAATTCGAAAGAACCCTAATTAATTGGAATGCACATGTGC-AGCTAAAAATTAGTGCTCAAAAAAG--AATTCATTGTAATTGTATAATGATTCAAAAA-GTGAATTTAAGTGACATTTTT-ACAACATTCAAATTACAGTGTCATAAAATTCTTCATTCACTTAGTCTAGT-----GTACCAATACACAAAACTCCAAAAATTGTTCTCTAAGTCCTACACCAATACAAAA------TTGGAGTTATACactaaagggagaaaaaaataactgactattctttaaaaatcaaattggaAGT-TCCTCACATGGTTTTAATCTC-TACCAGCAAGGCTGTCAGAGTCTTGAACTACACACACTTCTAGAGGCAGCAGCA-ATTTTTCCCCCAGTGGAAAT-----TATGCACAGAAGAGTTACTATTTCTTCATTACAGTTTTTAT-TCCATGAAAAGTGCTGCAGATTTTTCTAGGTCAAAGTGTTAGAAACAcatttt

a score=28171
s chr3           150961033 2105 + 160039680 AAAAAGTATATTTTTATACACATTTTACAAAAGAAAGATG--CTTAATTGACACCCTATTTAA--ATTCAGAAGCAACATGCAGTTGTTCCCAAATGT--ATATGATATAAATATTATTCAATCTGTAAACAGGATAATGCTGGTTTTACCAAGGAAACCTAGGCTTCTCTTTTTCCTGTTCTTTTTTTCTCTTTTA--------CCTTGAGCCT--------------------AACATTCCCTACTAAGCACCtatagtgaattagagatgatacaaacctaaccgttcttccattgagtgccctggtcaattgcccttctcttgaacc--tgacctagttcatatcttgtttttaatgagaatagtg--tagaaatcacatggtgtaattgagcctgagatctaagagctctgaaatactgcactagtactctccaaacattttcttgaggagc-acagcttcaatgaactgggaaggtctcactccaagctaagattacaaatagaagaactagggcactttcatggatagactaatctgagtctctagca-----cttccaataacagctACTTATAACAAGAATGAGCACTATGGGATATTTC-TCCTGTG-AAGCTTCCAGAT-ACTACACTCACAGAAGAAACCAAGTGAAGAATAATTATTTCATGACTGATACTTGTTAAACCATG-AAGCAAAACAGGTTGAAA-ATAATTTGCTTTTGtactagatactagatactagatactagatactagatactagatactagatactagatactagatactagatactagatactagacactagacactagttactagatactaggtactaggtactaggtattaggtactagatactagataGCTGCAATAATTTTAAAGGGTTAACAACAAAATGGAATGTGTTTAAACAAGTGTTCATGTG---TAAGTTCTTGACTTTATCTCAACACTGTGCAAGTTCATGTTAAGTGGATAGATTTATCCCTGCTTAGGTTCTGTGTCAATATTGGCAATGGCTGGCAGCCTACCACAAATGCCACAAATTCT-CATAGGATTTGGTATGATTGCTACTGTTTCTGGAGCAAAGTCA-ACTTCAGTATGTGTCTTTTGTTCCCCCAGGCCCACAAAAAAACATCTTTCATTTTAGTTGAGATCTATACCATCATC-CTGGATCACTTTTTGCTTAATACTTCAATAGTTACTTGGAACTTATGTTTTATTCTGAAGTGAGGAATGCAGGAGAGACCTCAATCACTCAGCTCAAACATCCTCAGATGTATTCAGTTCACATTCCTGTGAGCTGTTTTTATTTTCTGTTTTGGCTTTGATTAAATGAGGTACTAATACAACGGGAAATA-------------GAATGAAAGAACAA------CTGTAAGAGTCTCTGTGATTCACAGGAAGGTAATGAAGAGACACTGGTTAAGTAGAATAAGAAAAATGTGAGAGGTGGTTTGTAACAAGGTCTATTCAAGAGAGCACTGATGGAGAAGGCCTGTCCACTGAAGCAAATGCAATGGAATATTAGAGGTGATGAGGAATTGATACCAGACACTGGGTCTAATAATGATACATGAGCAATGAGGAAACAACAGAAATAACGATAAGCCCAGAGATCAAGCAAATCAGAAGAGAGAAGAGAATATTACAAAAAAAAAAGTCACTAAGATACACAGGTTGTCAACACAGAAGATAGACAC-----ATCAGTTATAAATTTTCCAAAA-TGCGTCTGAATGTAGAATAATGAATCTCAAATTAGTGATTTTGCAACATGAAGTATTTCATTTCAAGAATGTGCTGTTATAAAATTCTAACAGATATTGGAAGTTTTTGAAGAGGGAGCACATGGCTTATTTGGAAACCACATCTGGATAGTTTTCATTTATTTTCATTTAAAGTTATAGCCAAATTCATCTTAAACATTTCATTGCATAATTTTTCAATATTTGAATATGTAGTGGTTAATGTCATGGGAGAGGTATAATTAAAACTTGATTATGAGCTCATTTACAATTAGATTTCTTTTTTATTAAAAAAGCAGAAAC--ATTCATTTTATCAAT-TCTACACACAATTACTTATGATCTTAAAACGT--TGCTCAAAGTTTTGATTTTACTTGAGTAATTCTAAGCTATAGAGAAGGTCGA
s HiC_scaffold_1 137592240 1916 + 233722169 AAGTAGCAGATGTacacatacattttgaaaaagcaAGAGGATTTTAATTGACAATCTGTTTAATGATTCAGCAGTGTCATGTGGTTTCCCCAAAATGTTTATATCTTATAGTTTTAATCCACTTTGAAAATATGGGAATACAGTCTTTATATGGTGGTgccaaa----tcttttttct----tttgcttctcttttaaaagaatgtGTTGGGTTTTATTAAATGGTACAGGAAATAGAGTTTTCAGTTCTGTATCTATGGGCGATGACAGTGACTATAAATTTGGTATGTCTTTCTGTGAGTAGTGAAGTCGAGTGCCCTTCCTTTGAATCCTTTGCTGTCTCTTTAATTTGTCTTGATTGTGAAGAGGAAACAGAGATGTCATGGTAGAATTGAGGCTGAGTGTTGAAGGAGCTGAGATCCTGC--TGGGCCCTTCCA--------CTTGGAAACCTGCTGCTGTGCTGAGATAGCA---CCTTAATCCATGCTCATATTATAGGGAAGGGCACTGAGGCACTCTTGTTGGTACTTCTAGCTGAATTCCTAGCAGGGTGCCAGCACCACCAGCTCCCAAGCACAGGAGTCACCTTCATTGGATGTCCCAGCATGGGCAGGCTTCTGGATGACTGTAGTTCCTGCAAAAAGCAA-TGAAGCATAATGTCCACCTCAGGGATTCAAGGCAAACCACACAGGCAGGACAGACAAAAATACAATTATACTTTCTAAAAGGGA---------------------------------------------------------------------------------ATTTCAGT--------------------------GGTGT--GTTACATGGTAATGGATAACTGGAACAGTCTTGAAGGattaaagacaaaacagaatgtgTTTGAG---------ATGCGGCCTAAATCTTTGGCCTCACCTCAACTCAATAAAATTACATGTTCATTCAGCAGACTCAACCATTTTTAGGTTCTACTTCAACCTTGGCAGAGGCTGAAGGACT-----------CATACATTTTATGTGGGTTCTTAAATTAGTGTCATTGCTTTCAGCTTGATGTCCCAGCACGGCGTGTGTCCTCAACTCCCCTGATCCC-------------TGCTGCTTTAGCCACTCTCTATAGCACAGTTGTTGGACCAGTTTCTcatcagaactctgcagttcatTTGAAACATTAATTATCCTCTGAATTCAGGAATGTGTTTGAGAGTAGA-----------CAAACTGTGTAATATGC-TTCAGGCCCCATTTCTGTAGGCTGACATTATCTACTGTGGTTGCTTTGATGAAATCGTGGTCTGGT-CAAAGTAGAATAAGTTCACGACAAGGTAAGAGAGGGGAATTCAGTCTCTGGGAATCCCTATGATTCAGGAGAGGGCACCCAAGTAG----GGTTATGTAG--------------------TAGTT-----CAAAG------CATGAGA-CGTTTGTGGAGAAGGACAATTGATAAGGCCAGATattcagaaagattaaaaata----------------------tggATCAAATAACAGG----GAGCAGTAAAGTAGTAGAGAGAATCAGAATAAAC---------AAGGCAACTGtcatagaaaatgagaaattgcAAAAATG---GTATTTGAAACATAAACATTATTAACACAGGAGTTACTCAGCAGAGATCAGTTACAAACAGCCCAAAAACACTTCTGAATGCAGAGTACTGAATTTTAGATTTGCAATTT-ACAACATCAAGTATTACATTCAaggaatacatt-ttataaattcctAAAAGATATTGGCACTGCTAGAACGGAGCACACATGGGCTATTTAGAAGCCATATCTGGGTAGTTTACATTTATT----------GTCAGAGCCAAACTcatcttaaatattttgttgCATAACTTTATGTGATTTGAATATGTATTGGGTATAGATCAAGTACCTGTATGATTAAAACTTGATAATggttttccttaaa--------tttttatgatgagaaaaacagaaactaatTCACTTTATCAATATCTA---ATGATTGTTAGTGACCTTAACATTTCATGTTCAAACTTTCCATTTTACTTGAGTAGGATTGAGATTCAGAGTAACTcga

a score=45680
s chr3           150968591 1640 + 160039680 TGAGATTTTGTGGGAA--ATTCCAATCTaagcaatacatgtaaaaaaacaaaacccaaacaaacaaagaagcaaacaaaaaacaGTTATAGCAGTTAGCACAAGATCCTGAAAAGCAGCAAGCTGTCAATGCATGGCTAGAGCTA--GGAAAGGAAGGAGGTCATTTTAAGCCAATGGAACGCAGAGCAAATTATGGCAGACATGAAGGATTTAAATT-------ATCATGCACCAACGGAAGCCAGGTTAGCTCTCCCATCTAACGTGATA-----TAAATATTACTTGATAAGCCTCAAACTGCATATTAAATTTCAGAGCTGACTCTTCCCTTGGG-----TAGTCACATAATGCCACATATATTTTAAGATCGGCGGGTGCACATCAGCTGA--AAGATGTTATGAAATTTGTAACAAAAGCAGTTTTGCTCTACAGATCAGAATCCTGGCTGCCACAGGGATTGGAGT-GTTTCAGTGTACTTTGGCAATTCTTTTTTTATTTTCAGAACTTGCAAGTATTCATTTTCTTTCAAGTACTACAATGATATCAATTTTATAGA--------CATTGTTTATAACATAATCTGATCTCAAAGTCATATTAGTAACTTT---TGCTTTTCAATGCTGGTTACTTTTAT-AGCTGAGCATGGAGCATACTTGTTGAATGAGATTTGTCTATAGACAGGCTTATTATGGCACAAGGGCCAGGGGGCATTCTCTTCTGAGTTTAACCATCTATGGTT---GTCTTTCTTTCTAATCGTTTTATGAACTGTGTCTTGATCATGTAAAGACAAGGGAAATAACTGTTT-CTGTTGTGACACAAAGACAAACTACTTTCAGTTTAAATATACTCCTGGCTAGAAAAATGCAATAAAGCATGCTATCTATTGCAATGCATTAAACATTTTCTTGAAGTGAAATTGAGGAATTATACATGGACACAAATAGTGTTTGTGTGAGTGATTGGATTTCCCCTCCTGGGAACAATAAGAATATTTGAAAATTTTCCAGATCAATGCCCCGAAGTTGGAAAACATATTTAATTTCAGTACATCTGTTAAAGCCTAGAGAAAAGAGAAATCAATATGAAATTCAAATCAATCTATAAATGCACCTTGACCTGGGAATATATTTTGATAGGAAACATGTTCTCACATGCAAGCTCTAATCAGGAAATATCT----------TCTGACTATGAAGAAAGCATTAACTTCTGGCATTAATCACTTCCTCTACCCCCAGTCTATTATCATGTTTGAATCAGAGTACCCTTCAGTTTTCATTGTATGGCTGTTCATACTTTATTGCATGTATTCGCCA---GTATCATTAAGAATGCC-------CTCATGTTAATGACAAACACAGCTAAAACTGTGATTTCTTCTTCCTTTGCAATATGGAGTGGCTCCAACAATTTACAGAAAAACATCATTGCATTTGGGTT-----------ATAAAAAGAAATATGTGAGAAAAGACAATTACTTTGGGAAACATATTGCCCTTGCCAATAAAAGAATATCCTT---CAGGAGTGATGAGTTATTAGAATGCTAAATCTACAAATATCATTTAAAAGGGAAAGAAATGAAATATATTCTA---ATTATAGTAATGGAAATTGACACACACACagagcgagagaga--------gacagagacagaaagagagacagagagagagg---------cagagCACAGGG
s HiC_scaffold_1 137595941 1632 + 233722169 TGAGATCTTTTAGGAACAATTCTAATCTCAGCAATA-ATGGGGAAAAATA--------------------------------TTGTAATAGCTGCTAGTGCATTAAGTTGATGGAATGAAAGCAGTCAGCATACTGATAATactaaaggaaaagaatgaaataataataagctgATGATA-ACAGAATGAATTCTTTAAGGCATAAAAGGTTTAACTTCAGGTGCACTAATCACTAATGGAAGCAATGATAATTTCCCCTTCTAACAAGATACGCCGTAAGTATCACTCGATAAGCCTCAAACTACATTTTAACTTTAAGAGCTAGAGTTTTCCTGAAGATACTCAGCCGCATAATGCTATGTATCTTTTCAGATCAGCTATGGCACATGTGCTGAGGAAGATATTATAAGATTTGTAGCAAAAGTAGTAATACTTTGGAGATAAGCATCCTGCCT-TCAAAGGCAGCAGACTCGTTATAATGGTGTTCAGT-----TTATTCTTTTCTCAaaagttgtaaatattttttctttgtggagTAG---GCTGATactgattttatatatttgtactcATTACTTATGACATAATCTAAATCTGGAGCTGTATTACACATTTTCTCTACTTTCTAATTCTGATCATTTTGATTAGTTGGAAATTGAGCATAAGCCTTGAATGGTatttttctgcaaatattattattattgggtAAGG-CCAGCAGGCACTCTCTTCTGAGTTTGGCCACTTATAGTTCAGTTTTTTCCCCCTAATCTTTTTATTCACTACAACACGATCATGCAAAGACAAGGGAAATAAGAGTTTTCTGTTATGACACAAAGACAAACTACTTTCAGTTTAAATATACTCCTGGCTAGAAAAATGCACTAAACCATGGCAtctagggaaatattttaaacattt-cttgaaGTTAAACTGAGGAATTATACATGGACACAAACAGCATCGATGCAAGTGACTAGGTTTTTCCCTTTGGGAACAATAAGAATGCTTCACAATTTTCCACAATAAACCTCTGAAGTTGGAAATCATACttaatttcattaaatctatTAAAGCTTACAGAAAACCAGAatcattaaaaaatgcaaatcaaccTATGAAG----TTTGTGTGGTGAGTATATTTCCATAAGCCAAGTGCTCTGCCTCTCAAGCctttatatgaaaatatctgAAATCCAAGTTTGACTATAAAGAGA--AGCAATTTTTGACACCAACTACT--CACCACTCTCATGCTAGTGT----TTTGA------------TTTGGTTCTGATTCTG-----ATACATATTTTTCTATATGTGATCATCACATCTACCATCAATAGCACCAGGGTTTTTCATAATAATGacataaagaaatcaaagagtaatttcttttttctttacaata-------aTTACAAACACTTATATAATTACAGCAAAAATGTTGAGATCCCAGactacaggaaaaagaaaaatgctaaaatagataattatttaggaaaaaatat----------attaaaaatgtattcttatcTAAAAACCA--AGTTGCCACAA---TCAGTATATAAGTCCCA--TAAAAAGATACTGAATAAGAAAGAATTTATCtattattgtattt----ttgaaaaagaaaagaagcaagagggaaggaagggaaaatggagggatggagggatggagggagggggcTGAGTCTCAGAGCTCAGGG

a score=31601
s chr3           150978952 2281 + 160039680 AAAATGTGTT------ATTTCTATTATTAGAGTTGTTTTAATCATTACTTACATAT--TTTATATATAAAAGTCTTACTAGATATTCTACTTTAACTCCCATACTTGGGTTTGCATTTAAGTTCTTTGAACGTATACATCTTT---CAGTA---------TAGGCGA--------tttaatttggatagagtctgattattaatgtcgcttgagtgatggctgtttttactgtttctctac-----aaaccattacctaatcaaaggcgctaaaaggactgtat---ttttttctaggaacatcataatcttaattcttatatttaggtatttgatatgcttttgctagtttttaacataatgcaatgtggtcaaacaacttaattctattaaatat---AATTAGTAATGGTC------TAGAAATATTGTCA----ACATTTATCTTAGTGGTT-------AGATATATTTTCTATGA-----ATATTTACATTGATTTAATAATGA---ATACTTATCCTTATTTTATTCAACAAG--------------------------------------------------------------------------TATTTTCTAATATAA-CTCCTTTATATAGTT---------------------------------------------------------------------------------TGTGCTGGACCGTATGCTAGTAGTTATCAAAGTCCCTCTACCACCAGGGATTATAGCATCATTAGTCCTC-TATACATTA--------AGTCAAAATAAATCGTTTCATGTGTCATATAGTATTTTCCCTTCTTCA-TCTCTAATAATCTA----------------------------------------------------CGTTGCTGCTAACATTTCCTGCTTTTTT----------TTCTATAGTTCTGTTCTTCCCCTCCCCTCTTTCTTCCCCTT-----------------------------------AATACCAAATATTAGAATAAAGATA--CAGCCTAATCTACAATCTTCTACCTTAGGGATTCTATT------CCCCAAAACTTAAGATATTGGCTTTCCCTGAATATAAAAACTGGACAATTTGTGTTTCTTGATCGTGTTCCATGTTTTCTTTCTTTTTAACCTCTTCCCATCTGTGTGAATTTTTTTCTGCTTCTTTTTACATACTTTCCT--CTCCTTCTTGTTCTCTATATTTTATTTA-----AAATGACAGA----------CACCACCTTC---------AATTCAGTGTTCCT-----CTACTTCAGTGTTGCAAGCACAATTA--TTTTACTAAGAATGAGAATGCTG-----GAACTCAGTGCTCCAGTATTTTATC-----TGGCGATGTAACTGCCTCTTAGGTGATTAGAACAGGTGCAGCACGAGCAATCATAGCTCCAAGGTTGAATTTGCAATGCATTGTTATGTTGTTGTGTTTCCCATCATATTCTGCTACTCTGGACACTTGAGGCTTTACAGCCATAGTAGCAATAACAGTAAAAAGCATGGAGAAGAGCTATCCCAGGATACTTTGGCTAAATGCTCTTTGCACTAATAACCATGTATTTAAAGTCCCAT-TTCAATCCTTATAGATTGGTTTGGTCAATGCCTGCAGTTGTTATGGAAGCAGCGTTGTGATTTCCTAGAAACTACAAAAGTCTTTACCTTGATCAGCAGCTGTTGGTCAAACAGCATAGCTATCTCTAACAGCAGCTTTCGTGAATGCAAAAGCAATCCCCACAGGAGATCTAAAATGCTGAATCAATTTCTGTTTTAAGATCTAAACCAAAGTAACTGATGTTTGATGCTGCTCTCAAGAATTTTTAAT----TTTTGTGAAGCCCTCAGGGACTACCAGAGAAAGCCACTCAGAATATAAGTGCAATTTATTGTCTGAATTTTATGAAGTCA---AAGTCC----CCTCATTCATTTGCCTTAAAGAGAAAGATACCAGATTAATGATTTTTTT-TTTAATTCTGAGCAATTATGTGGTTTGAAGATAAATGTACCAGTATCACAGGACAGCATCTGTGAAATCTCAAGGAAGAAAA--CATGCAACCGT-CTTACAAATAATTCTACATTTTTACAGGGAAATTTAATGATTTTTTATACCAAATATTTTGAGCAACTCGGGCACGGATACTTTTCTAAGTAAAGGAGAAAATACACCTATGTCCTGCTCTTTTTAACTGAAAGGTGAGACGGGGCTTACACAGA-----TGATGTTCAGTCTACTTACACATTTCACACCCTGTTTTTATTCTTCAGCCATTAAATCA-GAGGAAAGACTGTGAGGAG-------------AAGCCATTAGGTGGTACTGCCATATTAAAAATGGTTGTACAGTTAACAT-ATGAAAAACCTAACTTTAACATAC-TATGGAAGATAACACTTTTAGCCTTTGCAATTGTAACTAGAACACAAATGTTCCTTTATTTTTTTTTTTTCGTAGATTTTAAGAGAACATAAACTGCATTTGTGTGAGAGAATTCAGTGGGTAAACTGAGCCATGTGTGACCATGAGGGGAAAAAAAAGAGATTTGAATCCAGAAATTTTGCATCAATATGTAGCAACTATAT
s HiC_scaffold_1 137603721 2573 + 233722169 aaaatgtattcatgccatttccatttttaagatTGT-------ATTGCCTGTATATAATCTAGATGCAAATAATTTATcagatattttactttaa-----atattt---tctgccctta-------tgaaaatatttttctcttctcaatAGTGTTTTTCTAAGCacaacaaatttttaattttcatgaggtctgattttacttactttttcatgCATTGTTCTCATTATTGGTATATTATCTAAGAAACTATTACC-aattataaattcataaaaatttgtGTCTGTTTTTTCTG--------ATAGTTTTAACTCTTACATTTAGTTCTATgatctgtttta---aattttgtatatacTATGAGGAAACTACACAACTTCATTAGCTTTCATGTGAAAATCAGTTGTTTTCATTTGGTGAAAATACTATTCTAGCCCAATTAATTTAACAACTTCcataaaaata-actttctttaATGTATAGATGTACAGGTATTTAACAGCCAgttattgttattactattttataCAATAAACTAGTCATCAGTTTTACCTATTTTCCATtctgtcttttattgttttttttttttttttttttttttttttttttttttttttaacagagtcTCACTTACATAGTTCAAGCCTCGACCTCATGGTGATCGTCCTGACTCAGCTTCTTGACTGCTGGGAATACAGTATGCACAACCATGCCTGGATTTTGTGTTGGAATTTATGCTAGCAGTTACTAGTGTCCAACTTCTCAGGGTGATCAGAGTTTAATTAGTTCTAATGTGAATTATTAGTTTTAAATAAGATAGAT--TTTTCTAGATCACATATTgttatcaatttttaaatctcTAGTAATCTTATTGAAttcatattcttaattcttattgATATCAACTcttcatttctataatttttgcttctctccttttctgtctgtctgtctctgtctctctctgtctctgtctctctctctctctctctctctctctctctctctctctctttccactcTCTCTTTTGTGGAGAATTCTAGGAAATAGAATCAAATTCATTACTCTCACCTAAGATCCTACATATTCATGACTTTATTTTTCTACCCAACAATTTGATAAATTACCTTCATCCAAACGTGAATACcaagctatttttattattt--ttgtgatttataCTTTCATTATGTTC-------------------------------------TCTTAAATGCCTTCCTTCCTATTTCCTACTAAGTAAATTTTACTAACGATTAAACAGCAAAGTCTTCTGCTCACCATTTCCTCCTAAAAGCATTCGGTGATCACAGAAGCTA--TCAGT----CAAGCATAGTTAACTTTTAGTAACATTGGGATTACAGCACCCGAACAaacttttacaatattttatcaTATGCAGCTCCATGCCTACTTATTAGCTAATTAAAACAGGTGCTATAATTGAAATCAGAGCCACAAGGTTGAACTTGCA--GAAGTcatattttactgctttttatgTTGTCTTCTGTCATTATAGG-ACTTGGGGCTCTATAGAGATGGTAGCAATAATAATGAGAAGGGCAGAGAATGAC-AGCTCAGGACACTACCGCCAGCTGCTCTCTGAAATGACAACCACACATTTAAATTTCAATCTTCAGCTCTCACGCATTGCTTTGGTCGATGTCTGAAGTTGTTATGGAGGCATCTTTGTGATTTTCT-GAAACTATAAAAG------CCTTGATCAGCAGCTGTTGATCAAGTGGCATGGCTACCTCTAACATCACAGCACATGAATGCAGGAGGAATCCTCACTGGAGAGCTAAGCTGCCAGATCAATTTCTGCTTTAAAATCTAAACCCAAGTAACTGGTATTTGATGTTGCtgtt-agaatttttaattttgttttctaaagccCTCATGGATTTTCTGagaaaatcactcagtgtataaATGCAATTTGTTATCTGCATTGTATTAAGTCATACAATTCCTAATTCCTACTTATTTGGCTTTGAGAGAAAGACACCTCTTTAATGATGTGTTCATTCATTTCTAAGCAAATCTGTGTCATGATACGAAAATTTCCCATATCACTGAGCAGTTTTTACTCAGTCCAAGGAAAGAGAACCCATGGAAACATACTCAGTGATATGACCA-----TTGTCTGGAAATTTGACTGAATCTTAG---GAATCGATTAAGCAAGTTCAAAATGATCAGTttccaaaacagaaatattaacaaaagagcCTCCTATTGCCATCTATTAGGGCATCAGAAGAAGCACATACAGAAAGTCAGAGCTGCAGCCCTGTGCTGCTTTTCTCA-TATATTGTTACTCTTCAACCACTGAAGTACAAAGAAGTACAGTAAAATATCTTGTCTGACTCATGTCA--AGTTGATtctggcattttaaaatttttctaataaataagTTCATTATAGATTT--CTCAAACTGACTTATGAAAAATACTTCTTGGATCTTATACAGTTATCATTGGAAGTTAAAATTTCC-----CTTCATTTAATCATGTACTTAAAGAAACTACAA----TAGTTGTATGCA------CAGCCTACATATTGAACTTTAAGCTAGGGTCATGAGCATGATAAAAGTCTTGAATTCAGTGA-CAAGCAGCAACATTTAGAGGACATAT

a score=191934
s chr3           150995698 8963 + 160039680 [encoded data, 9599 characters]
s HiC_scaffold_1 137615576 8954 + 233722169 [encoded data, 9599 characters]

a score=24729
s chr3           151005725 2015 + 160039680 TTAGGAATAATAACTAATGTTAATTATTTGCATGATCAGTGTCAAGGATTTTAATAAATCTGAAAAATGTGACTGATTTTCCTGAGATTTTTGTCCTCATGATGCCAGAACCTATATTTTTACATATACA-GAAATGT-ACGTGGTTGATAATACATAGAACAGGAATCAGGATGGTCCCCAGTCTCACTCTCCATTCATACATGGATGCCATGGAGAAACAGTTCATGTCTAGTACCTATTGTGGCTAAGTGCATGAATAGTGAGAAAAAACTATTTTGTATGG----------TGTCAGAGAAGTGAGGAAAGTGTAAAACTGAGGATTTCATAGAGTTAAAATTAATTCCAAGGTAAAATACCTTTCAAAACAAAAGCCATGTATACATTTTTACAGTCAAAAATATAGAAAAATATTTG---TGTTTGTGGAGAACTGACTACAACATTCAGTACATTTTCCTGATAAAACAGCCTAAGAGGAATTTTCTTGATATACATATATTGATAAATAGTTTTGTTTTCTTTAAGCT-TTGGTATTAAGATTTTCTACAATGTAGAACAAAGAGCAATTACAATAAAAATAAAAAG-----AATATCAAAGATAAA------ATTTGGAGTCAGAACATATAAGCACTGTAGCTTC--------ATAATAAATTAT-TTTAGAGGATGAATAAATGATGTTTACCAAGTGCAACCTAAGAGAAGACAATT------GTTTCCATTTACATAGACGTTGATGTTGAAAAGGAATATGCATAAAACTCATAGCCTTTGAATATCATGGATTTTATTTTGTAT---GGAAAATACTAAAATACATGCCAAAATTTACACCACAAAAAATCTAA-----------AAGAGAATAATTTGCGA----AGTATCTGATTAATAAGGTAGAGAGGCAGAAGAAATGAGACATGCATATGAGAAAGA-ATGTGCAGTTTCTAGTGTTTGAGACAATTAAACTTTCTGCGGAATGGT---GAAACCTTTTTCACGTACACTGCCAATTTTCCCTCAGGTTGTAGGACTCCCTGTTCAGCAGAACTGGAGGGACAAAGAAAATATAAACTGGCATCCATCTACTT-CCCCAAAGATGGCACAAAGTACAAATGGTCATTGCTCAATTTTTTCCTTCTGGTGTATGGTTTCCTACCCTGGTGTTTCACCCCAGGTCTCTCATGCCAATGAGAAACAATTTTAAAAATAACATCTACTGCTCTCCTAATTACCATAAAATCGTGAACATAAAATGGTTGGTATTTTATTGTGAATAAAACTCAAAACCTCAAGTTACAACATAAAAAGAGCGCTTGTGTTACTATTTCATGTGGCCCTAA---TGATGTAGTTCAATTGCACCGTTTAGGGACTGTGCCAAGCGAGTGCTGTG-CCACATCTCTTTGATTGCTAAAGGAGAGGTAGATATGGAAAGGCACAAAGTGCTATGCTAGACCTAC--TCATTCAAACAAACATACTGAAAGGCTAAGATTATAGACTAAATTATGGACGCCATT--CTGCCTCAATGCACAGTAG---GGCTGGCACTCTCAATTTTAAT-CTACCTTTAGATTCTCATGTGAAGAATTTTTATGTCCATGGGTAATTAATGCTTTCAACTCCCTGTGGTATTGTCAGATCCTTTCATAGAGTGGAAACTCAAAAGAA---CATAACCTAAATCCAGAAGTAGTTGTGTGCAAATCAGCATAAAAGGCTTTGTGAGTCTCTGGTAGGCTAATCT----CCCCTAACTG-TAGGTGTTAATCAATGTATCTGAAGTGAACACAGAGTAAACAGTCCCTGTGCCATGTGGCAAGTTGTTCAT-AGTTCAATGAATCTTTCAAATCAAACAACTAACACATGGTAAAGCTAACTTAGGA--ATCATAATAGAACCCTTTCAGCTTCAAGTAAACAAAAGAAGAAA----ACTTAGAGGATTTAAATTACATATACCGGAGTTAAAGAAGTCCCACACCAAGTCTTTCTCAGTTGTCTTA-TTTATGGAAATTCTATTTAAAGGATCTGTATGCACACAAACCAAGAGTAAACTGAACAAACAACACCT
s HiC_scaffold_1 137625242 1896 + 233722169 TTTAGCACAATAATTGAT---AATAATTTG-ATTAACAATGTAAAAG--TATACTATAACTGAAAGATGTAAACaatttttcaggtatttt-atcatcATAATGTCTATATGTGGACTTTTACAAAGCTATGAAATGTTAAATGGTCAACAAAAT---------GAATTac-----tctttaatttgtattttattttatatgtttg----atgTGGAAATTATCTTCCTCTAGAAATTGCCCTGATTAAACACCTGAA-GGTTACAGAA-----TTTTGTATAAAAATCccccaggagagagaaaaaacagaaatgtaaaacaaaaaggaaaacagagttaAAACGAATTCCAACACAAAGGaa--ttcaaaaaaatagaaaaatgt-catGCTCACTTCTAG-------GGAGAAAATTTGGATTGTCTATGGA-AACAGATT-TAATACTCAAAATGTTTTACTGGTAAA-CTGCCTAAAATACATTGTGTTTATAAGTATATATAGCTTGGAAGTTTCATCTTATTTATTCTACTGCTACTAGGCATTCCTAcaatgtatttcttaaa--aattcctttaaaatctatatttttttaaaattaaggataAATGAGCAATT---acttagagaaaataaatgacgtggtttctccttaaaataataaatcatctTTACAAAATG------TTATGTTTGTGAAGTGAAATATAATACGGAATGATTTTTATAGCTTCAAATTATCTTCATGTTTAAGGTAAGCTATGAAATGAACAA----CATATCTTGCAAATAACCTGAGTGCTATTTTGCattctaaaataaatcaaaaattctGCCATA-TCTAAACTAAGAAAAGGCCAgttatttcagagaaaagaaacatttgagaTGTAAATATCTGATAAATAAGGTATAGCAGCGAAGGGAATTGGAAA-GAGGGTGAGGAAGAGAGGAGCAGTTTCTAGTTGTTAAGGTAATTAACCTTTTTTCAGGATCATTAAGAAATGTTTTTCCTGCACACTACTAATTTTCTTTCAGGTTGTAGAGGTCACTGTTTAGCAGAacaggagggagaaa-aaaatgaaagccagTATTCTTCCACTCACTTCAAAGTACACAAAAAACATTAAGGATCCCTACTCA----TTTCTTTCTGGCATGTGTCTTCCTACCCTGGAATTCTCACTCAGGCCTTCAAT-----------ATAACTGTAAAGGCAGTATC------------------------------AGTGCAAAATAGCTCTGACAGTATTTCGAATAAGCCTCAGAATGTTTAATCTAAATATTtaagaagtgttc---------ttttttgcCATCCAAATTTTTGTGTGAGCCAGATGTACTG--------------CAGAGGAATGTTTTGTCCCCACAGGGCTGATCTCTAAAGGA----TAGCTATGTGAAGGGCAAAAGCTCTATTCCTG-CATACTGTCATG-AAACAGAAATCCCAAAAGGctaaaatgatggaataaat----agCTCCAATAGCTGGTCAAGTCCAGAATAGTCATGTTGACTCCCTTAATTTTCGTACCTGCTCTAGCTTTTCACGTGTGGAAGTTCCATTTTCATGGGTTCTTAATAGCTTATGCTACCTCTGA-----------CCTCT------GTGTGAGCACAGGAGGAGCCCATCACAAGGGTCTAGAAATGCTCATGGCTGA---------------CGTGAGAGTTTCTAGTAGGCTAATCTAATCCATCTAGTTGCCATGCTTTCATCCAT-----TAAAGAAGACACA----------------TGTAATGTGATGGGTTGTTGATGAATTCA---GACTCTGAAAATGGAACCAAGAGCCCATA--------AATCTGGGAAGATGACATTATAAC---TTTAGTTTTGACTTACGAATGATAGAAAGGTGATGTAGAGG----AAAGCATAGAGACTGATGTGAGGTAAGT-CCATACGAAAACCTATTCAATTACCTTATTTTGTGGAAGTTCCATTTGGAAGATATTTATGCATAATTATCCAGGAAAATCTGAACAACGAGCCCCT

a score=53853
s chr3           151015346 2556 + 160039680 AATCATTTTTATTATCACATATTCTACTTGACACCAAATAAATGTTCCCTTTCTATCTCAAATGAACCACAAGAAACCATTTGCTAG-----CTATATAAAAGGCTAGCAGCTAAGTTGAACCAATATAATGTCTAATACTCTTTCTGTCTAGATATTGTTACCAGCTACCATGCTCAAAAAGTTCATGCTATAAGAACAGAAGAACAGAAACAAGTCTTCATTTGAATTACATTATTGGATTTGATCAAGAGAGTAGGGTTTTTCTTCACAGAATCTGGAACTTAT--GAGAAAGTGCCATTTCTATCAGCAAAAC-AGATTCAGTCTGTGTATTTTTTCTCTAGCTGCCAGTTTATGACTGATACTTGAAAATGGAGTCTATACAAAACAATAGGTCAACA-GTGTAGTTTT-GACAATGGCTTCAGAACTCTGAAAATGGTTTATTGCTATAACCATTGTTTGTTTATGGCCTCTTTACTCTGTTACTTAAAACATATCCTCTGTTCAGTAAATAATTCTTTATGTCTTACC--------------AAGAGTATTACTAAACTTGCTATAGA-----------GAAAATACAT-------------------------GAAATACCACATGAG---------------------------------------------------------CTTATACCAGACA-------------------------AATTGAGATCA-----------------------------------------------------------------------------------TGCTATGG-------------------------------------TTGAAGTTCAGAGCAC----CAAA-----------GTTATCACTATATCTTGTG-AAACGCAGCTAGAAACTTTGAGTTAGTATTCTAATTTTGCATAAAAGCCTGAGAAAATAAA--------TCATTTGACCTTTATATATTAGATGTTT-TCTGCCAAGTTCAGTCTTTTTGTTTGTAAATTTCTAAAGGCTTTTAAGAGATTAT----AAGTGCAAATGTGTGAAACCTAGAAAAATTTC-TATTCCAACTGTCACCTAGTTCATAGTCACACTAAAGGCCACATTTCAGTGCCATGGAAGTATTTGATTCCTCACTTAAGTATTTTGACTTCATTCCATCCTGACCCAGTTCCCACCACACTCTCTGAACTGCAGGTGGCTGGTTAGTTGTGTAATTACAGTCTCACGGTTGAGGTCTAATACTAAAGACTCAATTTAGTTGTACAAAGAGAATGCAAGATCACCACACAGATTAGCTCTCTAAAGACTTTTGATCCTTTTGTATTTTAATAAAATTTCCAAATGCTATTATTGCTCCTTTTAAAGACTATGTTCCTGAAATCTTTTGTTCTTTACAAGCTTAATATCTGCTGAAGAAAGCTGCGGAAGAAAAAAATGTTCAATAATGGAAGTGCTAAGCC-CCATTCGCATAATCAACTGAAGCTTTCAGTCTTTATCAAGCTATGATCAACTGTTCATTACAGTCTATCCTTTAAGCCCATGCTGACTTCACTGTTGAATTTTCCCTATTGCTTG-TTTTGCTTTGACAAATTTTGTCTCTGTGTGTGCTGACTTTTGGAGGTAATTCATTATTTTTTCTTGT--TCTTTATGGATTTTCTCATTTAATGATAGAAGTAAATTTGACCACACC-CACAAGTAATTAATGAATTATAC---ATA-AATATTGTCTGTAATTCATATTTCATCTATGTTTTCAGTGTCATAAAGTTAAATTTACGTCAAAAAAGCATTTAGTGATTGTTATTTTCTGGAACATATTCACAGATGTATATTCATGCACCTTCATTCTGTTTGTAAAAATAAAAGTCATATTTC---TATGATTTTATATGTTAAAAACTAAGTAATGG--ATCAAAATGACTAG---TCATTGAGTTTAAA-ATGCTTTCAGGCTTATAAATGTATCCATTCACCTACAGCCCCAACAATCATTCATTTGCTATTTATTC-ACGTTATGAAGCACCTTGTATACTGTACA-GATGAACACATACTTGATTATAAACTCAGAGgtctaagttttgatatggtgagaggaaactgtcatctatgaagttcatttccaagaaccacacaacatgtttaacatgtttccaaaatttaacaacatattactgatgttctgatgttttaattttgtagatttgtttgggccacattcatggttattctcattgaagaaatcccacaagtcgttagttacccacatctgAAAGATAATTTGTTTAATATACCATAATTAATGGCTTAAGAATCATGGCAAATAGGATGTAACATGACTGGCCCACTCTTTGTTCTAAATATTTAGcagagatttcggaagggggtgctat--ttgagttgaattatgaagaacacataagaccaaccaggtaaaaATATTTTTAAACACATAAAAAATGAAATCAATATGAGATAGAAAGGTCATCTGCATCAAATATAGTGTTGCCCTTTGAATAATCATGGCCCAGGCTTTGCGTTGATGTAAATGATATGAAACATCACTCTGTTTTGCCATCTATAAGTCTCTGAAAATCTTATTTGCAGC-------TTTCCAAAGCTCTTAAGCTAAAGAGTAAACACACATCGTTGCATTCAGACT-CTTCAGCTTCATAGATATATAGTTTACAGAATAATTTCTGCTTCTAAAGGCTATTAAGAAATTTGGGGAAAGAATGGCCATTAATTTTGTAATGGTTTGAACTGTGTTACTTGTATCATTGTACTAATGATCTACTACTTATGCTTT
s HiC_scaffold_1 137638803 2642 + 233722169 AATCCTTTCTAGTGTCATACACATGACTTGACATCAAATAAA-ACTCCTTTCACATCAGAGTTAAACTATAAATAATCTCTTGCTTGGTCTTCTGCAGAACAGGTGAAAGACTGGCTAGGTCT--TAAGATGTCTTATGATCTTGGTGTTTGGCGCTTGTCTCAAATTACTGTGCTCAAAGGATTCATGTAGTCAGTAACGAAAAAAA---------CTTCATTTGAATTACATTATTGGATTCGA-CTAGGTACTCTATTTTATCTGCTGAGAAACTGACACATATTGGAAAAGGTACGATTTCCATATATAGAACCACAGGCAAAGAATACATTTTTACTACAGCTGCCAGTT--------------GAAAATA---TCTACACAAGACAATAGGACAGAATATGTAATTTTAGGCAATGACTTCAGAATTTCCAAAAACACTGGCTGCTGAAATTGTTATTTGTTAATAGGTTCTTT-----GTTCCTTTGAGACTTTTCTATAAt-----aacaattctttatttttaacctaTAGATACTTGAGGAGAGTACATCTGAACTGCCTACTGATATTTTGCTGTAAAAATATGTTTCTACTCATTTCTTACCTCTCACTGTAACACAATATAGAAAGAGTCATAAATCTAATTTCCTAAAAGTTAGATTAGATAtggataaaaatttaatatttataataggCATTTAATTAAGTGTTAAAAATTAGGGatttgaaatcagaaaatttaAACTTAAGTCTTATCTTCATCTTCTTAAGCTagtgaatcttaaaaaaaaaataaacaagttgtTAGCATCTAAGTGTTCTGAGATGTTGTACAGGCAAAATGAAACACTGAGAAAGTATTTGAAAACCAGGTTATGATACAAATATTTGTAATTGTTCTCACCACATTTTGtggaaatggatttggaaaatgCAATGTCTAGTTCTTATGTCACCTgaatagctaaaaaaaaaagagaactttcCATTTGGTTTTCCTATATTGGATGTTTCTCTGTCAATTAAGCACTTTCAGCTTGTATATTTTGAGAG--TTTTATCAGATAACGATGAAGAGCAAATGTGTGAAGCCCTGAAGATTTTCCTGTTCAAATTGT-AGTTAGTTCACAGCTGCATGAAGTGCCCTATCACAGGGCCAAAGATGCGTTTTGCTCCTCGTCTATGTGTTT-GACTTCATTCCAAACTGACCCAATTCACTTGACACTATCTGAGCTGCAGGTAGTTACCTAGTTGTGTAATTACCATTCCGCAGTTTCAGTTTAATACTATGGACTCAATTTAGTTGGATAAAGAGAAAGCAAGATCCCcacatagattaa-tttttaaaggcttttgatccttttgtattttaataaatttccCAAATGCTATTATTGCTTCTCTTCAAGACTTGATTCCTGAAAGCTTTTGTTCTTTACAGGCTTAATATTTGCTGAAGAAAGCTACAG-----AAAAATGCTCAATAATGGAAATACTAAGCCTTCATGTTCATAATCAACGTGAGCTTTGAATTTTTATCAGACTTTCATCAACTGTTCATTACAGTCTATCCTTTAAGCTCATGCTGATTTCACTATTGAACTTctcatatttctttcttctgctttgagaaacatt-tttgtatgtgttttgactttttgagggattgctttttttatttgtatagatTTTATTGATGTTCAGTGTTAATAATAGTTTTCAATTTAACTACATCGCACATATAACTAGCAAAGTTTATCAAATAGAATGAAGTACATAATTCATATTCTAGTTAAATAATTACCTGCCGATAGTTAAGTTGACCTT-AAAAGGCATTTAGCAAAAGTT-TTTTCCAGAGTACTTTGAATGATTTATCCTCATGTATCTTCATCGCA-ATGTATACACAGccattttctttcaattattattttataccTCAAAAGCTAAATTATTGTCAGCAAAATAGCAAAGATTCTTTGAATcaaaacatgttttt--gtttatgtgtttattcCTTCATATTATTGTCCAATAGTCTTTCACTTGGAATCTATACTGCACTGGAAACCACCTTGGGCACTGCACATGAGAAGGATATACCTG---------------------------------------------------------------------------CAGAAGATGTATCCCAGGCCTTCAGAG---------------------------------GATTTT-------------GGATACGTCCa--------------------------------gtaagata-----atttttaaaataat-------ataaaccaAAGTAACTACCTTAAAGAATATAATATGTGAGAACTGACATATCTGTGACTTTGTCTTCCATAGAAATTAGGGAGAAATTT------GCAATACTGTTATTGATTGGAATTATAGAAAGCACATGCAACCATCAGACTGAGAGAgtgttttgaaactttaaaaaggaaataaata-aagaagtaaagGTCATTTGAGGCAAATATATTGTTGCCCTTTGAATAGCATGGGCCCTGGCTTTTCCCTATTACAAATGAGCTGGAATAGTCCCCTGTTTCACTGTGTGTAAATGTCTGAAAATCATGTTTGCAGATCCGGTGTCTCAAAGGGGCTCAAGCCCAGGGCCAAGC-CATGGCTTTATATTCAGACTGCTTTAGCTTCATAGCTGTGGAGTATGAAGAATTATTTCTGCTATTTAAGgtacttgagaagttc------agaagggTGATAATAGTTTCattagtctaaaatatatttatta-atggtTGTATCATAGATTCACTCTTTCTGCTTT

a score=23246
s chr3           151021753 947 + 160039680 ACACTTCACATAAATAAATACTAATAAC--TAGAAAGATCAGTCT-------ATGGATGGGCATATCTAAGTCATTGTCCTGCAGACTACATTAAGAGGACATACAAATTTGTATTATTTTTGTTCTTCTTAGGCATTCACCA-CATATTTTTCACCG-TCAAATGTACTCCTTTCTAAAATTTTAGAATATGAACAAAAATACCTTATTGTCCACAAAGCCATAGGTGTATTTTAAACT-GATTCTATATCAATCTTT-ATTTTGAAATCTCATAGCTTTGACTCTGGTACAAGTTTTAA-GAAATAAACTTTATAAGTCTCCTGTTCCCAAGTCTCTAAATTGCACATTTTGAAACACTGGCTATTGCCGTGCAGACCGTAGAGATTGAGTGCAAAGCTATAATTCACTTTCACGTTTGGGGCTGTTGACATAAGCCAGCATAGCTTGTTGGCTTAGGGACAGCAACACAACCCTGCTATTGAGTCATGGCCTGTGTCAAACATGAGTAGGAAGAAATTGACAT--GCACAGTTATAGATAACAGTTCCA-TCTCTCTATACTTGGGATATGAAAGAAAAAAAACACTTTCTTTTTTAAACATTCAAGAAAGAGTTCATCTCTGCAAAATTTTACAGTT--TGAAAAGATAGCAATTTTAGAACATTTTGAGAAACTATCAAAT---TTTATACTAAAGGAAAGATAAAATAGAAGGATGAAAAAATACATG----AAATATATGTG--ATTTCTTTCACCTGAAATGTCTTGGGAGTCATTGTGATAATTATCATCTTCCCTTGTATAGGAAAGATCTTTTAAAGAATTAT-TTAGTGAATCCCTGGTTGTCACTGCTGGATGCAATAGACTCATTCATATCCTAAGAAAATTATTTGATTTTTATTTCTTAGAATAT-TTATAAGAGAAGATGGGAATAGAGGGGATGTATA----GAATTATTAAAAGCCTTATAT
s HiC_scaffold_1 137643653 941 + 233722169 ACACTTGATTCCTGTAGATTTTAGTAACACTTAAAGGGTCCCTCTTCTACTGATGAGTTTGTATGTTCAAAGTATTATCTCTCGG-CTCAATTTTGATGAAATCTAAATTTG----ACTTTT--CCATGTAAAGTATTATCCAGCACATTAGGAACAAATAGAATGTAGTCATTTCTAAA-Ttccagaa-attaataaaaaaattctgcTACCCGTACAGTTGTAGGTAGACTTTGAACTTGTTTTtatatcaatcttttattttaagttCTTATAACTTTGACTCTGTCACAGGCTACAAAGAAACACACTTTATAAGTCTCTTGCTCCCAAGTCTCTAAATTGCACATTCGGAAAAACTGACTATTTCTGTGCAGAATATAGAGATTGAACACAAGGCTATAATTCACTTTCGGGTTTTCTGCTGATGACATAAACCACCAGAACTTGTTGGTTTATGAACAGCAACATAACCCAGAGATTGAATTATGGCACGTGTCCGTGATGAGCTATAAAGAATCAGTGTTGGCA-AACCAAGGTTAATAGTCTCACTCCATTTGAGGCCGAGCCATGGAgcaacaaaga--------tttttaaatatttaggaagaGGTTCATCTCTGCAAAATTTCATGCTTTATATAAAGATAACTA-TCCAGAGCCATTTGAGAACATATCAAATACATTTGAAC----------ATAAAATATGGAGACAATGTAAGATAGGCCCCAAGCAGGTCTGGCAGTTTACGTAACTGAGAGGCTTCTGAATCTGCTGAGACAATTATCAGCTTCTCTTCTAGAAGTAGCACA--TTACAGAATTGTATTAGCTCACTTATGCCCCTTACTTCTGAATAT-ATGTGCTTATTAGTAGTGtgaaaagatt-tttcctttttatctc----aaTATGTtttgagaggaaaag---aaggagagaaaatacaatacaaataACTAAAAGCCAAATAT

a score=29601
s chr3           151025723 2981 + 160039680 GGGAATGTATAGGTAAAGAGTTTAGCTGATAGATGTCAAGGAGACTTCTGGAATAAATCCAAGG-TCATTCAAATTAGAAATTTTAATGGTGCATGAAGACAGTTACCATTTTG------AGTTA---TATTTCAGAGCATTTTTCAAGTTTGTAGCTACCTAGGCTTTGATTTGAATCATGGCTTCATATTAGATCCTACTTAACTAA----------------------------ATCTGAATAGCATTGTATTTAAAGATAAAGGCAAAT--TCACTTAATATTCTGTGAGGATTAAATATATTAATGTACACAAATTTAATTTTAAGATGCCACTCGGCATAACATCTGTGGGAATCCCCTTGATGTCATTGCTTATGGATTCTGGTTTAAGATTTTGGCATATCTGCAAGAAGTAGAATCTTAAA-----TCTACTAGTAGAGCACTCTGCTGAAATTG--TAGAATATATAGAACATATTAAATCCTTGACAGACTGGGAAATAGTCTAAGAGGAAGACAACTGAAGATTGGTAGGT----TAAAAACTGTACCTTTCTTCTGTAAATGATTTAATAATCAGTATTTATTGAATAAACAGtaaatatatatgcatataaatatattttatattttaatataaatttataagtgcatatataaatataAAAGTATTTAATTGTGCTTCTATCTTTTACATATACTGCTTGTTGAAAATATTGAATAGTATACCACCTATCAGACCCCACTGA-TCTCAAGATCAAGTTTCTTTATAACCAG------AATTATGTTTGTT----AGACTCCTTGAagagagagagggatggaaagggggagacagagaaaaggaacagaggcagagagactcacagaaagagacatagagaggtagtagaaagattcagattgaaagggagaagaggggagagtagaggaggagaTGCGGACAGAATGgaggagaggggaggggaggggagaagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggGAAAATTACAAGATATCTTTAGTGACAATTATGGGTTACAGCTACTCACATACTTAACTGCCTAAAATAGAAGCAAAGGAGTAAGGACCCTTGCCAGTAATTGAGCTCTTC----CTAGTGCGGAGTTTG-CTCATGTGGCATCAATTTGCATTTTGGTGATTTTTGATTCATTTCATAAGA-----TTCTTGTGCTTTCCTAATGACAT---ATT--GAAGTT-TTATCAACAGTGAAATATCTAAGATTGACCATGCATCTTTCATCCCTGAATAA---ACCATTTGTTGTAATCAACAACATCTGTAGGTTAATTGAGAATTCTGTTCATGATAATGTTAAGAAAGCTGACATATTTTCAATATCAGCTGTCATTACTCAAGCCCAAAGCATAACAGATGTTTGTTCAATAGTTCTCAGTTATGCTATAGATTCATTCAGAACACTTAATATCTAGTCTAAACACAAAA-TTAGTATTGGAAAAACATGCTCTCTGGACCAATGCTGTTCTTCCTGGTATAAGATAATCAATGGTTGCTATTGCTTTGGTCAAGAAGAGCACCAGTTTCACCTCATTGTCATTTTACAGAACAATAAG---CAAT--------ATGAAGAGCAATGTATCATTACAATAGGAAGAGCTCACCATCAAGTTGGGGTGAGATTTCGTCTATAAAAACACCACAGTATCAAAATACATGATACTCACCTATGTTAAACCTCAGATTGAAGGAAATCTCTAAAAGCCTTTAAAGTCTAT-GCAAACTGATGAACATTAAATTTTTTGATATCGATCTAATTTTTTCATATACATTATTTCATTGTGGTTTTTGTG-TGACATACACATGTGCACTTGAATTTGTGTGGGAAACATCTAGGAGTGAGCTTTCTGCTTCTCTACGTGCTTTTCAAG------------GATGGAAGTCAGGT---TGTCAGACATGGCAGCAAGCAACT--TTGTCCAC---AAAGTCATCTGGCTTGCCAA--TAAAGGAGTTT-----------------TATTCTCGACAAGGCAACT--------GCTTATCCATGTG------CCTTCTTCTGTTAACAAATGGGCCTGATAAGACAAGCTTAGTAAATGCAGTTTC-TGATATCTGCTGGTAAAACATTGACTACAGGAACAGCATAGAAAGAATTTTGGAGAAAAC---TTACATTGTCCCCTTCCTTTCCCATTAATTCCATCTCTTCCAAATCTTCTAGGACAACAGTATGTGATTTTAA-----AAATTTGTAAGGGCATTTCAAGTTTCTTTTGCATTCAGGCCTGGAGACATGA------CTAAATATAGTCACATTTCCATATAATATGTTTTTTAATTTTTGCATAAATACTAAGTACTTTATGAGAA----AATATACATAAATTGTGAAGAATA-GAAATCACACTGTTAAAAACT--CAGGCCTAGACAAAATGGGAAAC-AAAGACTGATGTGTTAAAATCTCATTGTCAACTGGAATCAATGACCTTTTTAATCAGCATGGTTAGATG--AAGAGTGCTGTTGGTACCTAGTCAG-TGTAAAACAATATCAACTGAAGCTTGTGTATGAAGCCCAGAAGTCACAGAGATTGGAGAGTTGGTAGAAGGAGCATTGTACACAAGGTAAATGTATAAC--AGACTCCCGGTTTGCACAGACTGAGGAATGAATGGGGATGTGTGGATATTCCATTAGGACTGCAGGACATAGGATAAGGAAACATTGGAAGATGAACCTGAAAGA--------GTAGTAGCTTAGGGAGAGATGCATGGTGCTTGGT-GATTGAAATATAAGGTGTAGAATATTTGCTTTTAGTAATAGTG--CCCCCTAAGATCTTCCAGCTGCA-GTGGGAAAGTCCATGGTCAAAGTGTTGCTTGTGAGCTATTCATC--------TCAAGTTGTATGGACTGAAGCAGAAAGAAATCGGAGGCTGAAAAA-AGCTCTAAGGAGG--TCTTGCACTTACAGTTGACAAATGCAAGCTTAGAGACTTGAGCAGTATAA
s HiC_scaffold_1 137651005 2703 + 233722169 GGAAATGCATAGGAAAATCATTGAGTTGA--------AAGGAGATTTCTGGTGCAAATCCAAAAATCACTATAATTTACACTTTTGAAGGTGCCTAAAGGCC-TTATCATTCTTTCCTGTATTTAGGGTATTTAGGAGCATCTTTCAGCTTTCGAGTCAGGCAGACTTAAATGTGAATCCTGGCCTCAACTCGCATACTGCTTGGCTGACCTTGAGCAATTCATTTACCCTCTCTGAATTTCAATCTCTTcctatttaaaaactaaagaaaataatctctcagtgTTTCATGAGAAATTCATGTAATAATAC-CACAAATT-AATTTTAACACATTCTTGATTAGAATTCCTGCAGGGATCTTCTTGATACTGATGTTCACAGACTACCTTT----ATGGCAGCATGTCCAGAATAAATACCAGTTTAAGACATGCCAATTAGAGCAGAATGTTGATAAGAATGACTAAAATATACTCTAAGCATCAAATCCTTGATATGGTTAAAAGTATACTAGGAGGAAAGGCACTGAGGTTTAGGAGAGACAGGAAGAATTTTACCTGTC-----------ATTTGATAA---------------------------AAATGTTCTTGGaaatactttct-------------------------------------------tattt--ttattcttttatccgA-ACATGGATTGGTTACTGAAAACACTGAACAGAAAACTGTCTAGAAGTTCCTGCTGAACCTCAAAACCAGACTTTCTTATAACCAGTCCTGAGATTAGTTTTGTTCTGGAAACCtct------------------------gagacacagagaaaaa------------------tcaCAG----------------------GAGAGATTCAGAG-----------------------------------GCAAACAGCATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTTCCCAGACACTTAAGTCCCTGAAATAGAAGCACAGGCACTAGAAAAGCTGTAAGT---TCAGCTCCTCTGGCCCGTCACTAAATTTGTCACATGGAAAGTCAGCCCACGTTT-GCTAAT-----ATTCTCTCTAaaagtactgttttttttttttctttagtgacaTTTAATTCAGAAGTTGCTATCAAGAGCAAAATATCCAGAGTTGGCCTCAAAACTTTTCTACCAAAACAAGATACAATCTACACTA-TTGATGACACTTGCAAGGTAATTAAGAATTCTGCTCATGATAATATTAACAAGCCTGGCATATTTTCAATACCAATTGCCATTACTCAAGCCAAAGGCATAACAGATATTTGTTCAGTAATACTCAGGTA-ATCATAGGTTTGTGCAAGACACTTAATATCTACCATAATCATACACTTTAGTACTGGAGAAACATATTTTCCTGACCAGTGGTATTCTTTCAAGTATGAGATAGTCAATGAATG---TTGCATTAATCATGAGGAACAACACTTTCATTTGATTGT-GGCTTAGAAAACAATGATACCCAGTCTATTTTAGTGGAAGGCACT-TGGTACTGCAGCATTGGAGACTCAGC------TTGTGGTCAAGATTCTTCTCTaataacaaaatgata-caaactaTCTGGCACTGTACTATGTTAATCTCCAGTGCCTGGGGAATTTCAGGAAGTTTCCAGGGTTTGGAGTAAGTCAGT--------AATTTCTGAATGTAGACAGAAGTTTGTCCCATTCTTTGT---ACTGTAGTCACCTTATTAATATATTGTTGACCCACTGATTATGAGATGATGACA---AAGAACTGATATTCTGTATTCCTCAACAGTTTACAAGTTGAAACCTGAAAATAGATCTCAAACCAGTGCCTGACTTGCAGGCAATCAGATAGatgttcattgaagagaaaattaaactgtcaattttaataaatttgtgcAAACTAATGTATATATAGTTGAATAGAGAATTTGCAGGAATCTCAGCCACTTGAAGTCTTGTTTTCCTTCTTAAAAATGGATATCATAAAAGCACATACATAAGTGAATTTTTATGAGATGTGAAAGTAAA--TTTGATTGTAGTGACAACACAGAACTAGAGCTTGAGGAAACAGTTTCTagattttctttcccttcttatt-aTTCCTTCTGTTCCACAGGTCCTAAGATCAAACTACATGATTTTTGCATTCAGATTTG-------GTATCA---TTCCTTTGC-TTTAGA--TGGCAGCAGGAAGGTAGTCACATATAATTACATCCttacacaatttatttttc--ttatgaaatatCAATTGAGTGC-TTATGAGAAAGACAGGAAGCATAAG--GTGAGGAATATTAAGTCACA-TGCAACAGGATAGCAAACCTGGATAAAATGGAAATCTTAAGAATGGTTCTCTGAAACCATAAAGCAAATTAGAAGCAATG-----------TAGTAGAGCCAAGTGAAAAGAGAACAGTTTCAGCCTGGATAGTTgagagacagcatc--ttgctgttGGCATGTACAAAGTGGAAGCTGTGCTGATT-GAGAGATGCTAGGAAGGGTGTCACATACAAGACAAA-GTAGAGCGGAGACACCGCGTTTGAACATCGCTAGGAATGCAGAAGAATATGTGAATACTCTGTTTTGGCTGTAGCATACAATACAAGAAAAGGAAGAGTGAt-agtctgaaaaaataaattggtaAGAACTTTTGGAGAGCT--------TTTAATGGATTAAAGTA----GTTGGAACTGTTTTCAGTTAACAATAGAGAATTGTCAAAGATTTTTCAGTTGCAGGTGGAAAAGAGTATCATCAGAAGTTTGCTTGAGGATTATTAGTCCAGCAATATGGAGGTGAATaaactgggaaagaaagagactggAGACTGGGGGACAGTGTTAAAGCAGTATCTGTCAGTTCGAGGAGACAACAACATGCCCATAGACCTGAGAAGTGGAA

a score=4056
s chr3           151027049 115 + 160039680 TGTAATCAACAACATCTGTAG-GTTAATTGAGAATTCTGTTCATGATAATGTTAAGAAAGCTGACATATTTTCAATATCAGCTGTCATTACTCAAGCCCAAAGCATAACAGATGTT
s HiC_scaffold_1 208764727 116 + 233722169 TATCATTAGTAGCATTTAAAATGGTAATTAAGAAGTCATTTAATGGTAATGTTAACAAATCTAGCTTATTTTTTACTCAGATTGACACTACTTAAGACGAAAGCATAATTGATGTT

a score=40008
s chr3           151045404 1389 + 160039680 TTTCAGAGTAGAAGCAAATGATAGATTACAACCTATTCAATAAAGCTGAATGGATTTTTGcagtggttctcaactggaggcaactgttcaagagtacatacttggcaatgtttggtgaT---------TGCTACCATTAG--TAGAAGACTCTCATAAAAAAGACAAGGGGCCAAGTATGATTGAAATCCACCACACTATATAAGA--AGTCTTATACAAGCAAGTCCTA----GTTCAATCTgaaataaaaaaa----gaaaaaaagaaagaaagaaaAATTTAAAATCCTGCTTTTGTTGCCCTTACCTTTTAGACTTA---CATGAATGCCCAACATGCATGAAAACAATG-TAAAATAAC-------ACTTAAATGGATCTACAAGTGAGTAGAGAGGACAGGGCATGTTTCCAGGGTAAAGGTTCCTAAATAAAAAAATTCATATC--TGCATTTCTTTACAAAGAATCCTTGGTTAGTATAATTTAATGAAGGAATGGAATGCACTGAAAACTACAAAGTACTTTTAAAAATCCATTACCTGGCAATTATCTTCATTTAAGGATATATACTTGAAAAGCAG--TCAAGAACTCCGAGATTTCT--TTAAAGCTAGAACTTTGGGAAACTTGCACTTTATTTTGCATGAATTGCTAGCTATAAAAAATAGATTTTTGTTAACATACATTTGTCTTTTAAATTGCTAAAAATCACTGGAGAGGTTACCACACAATCTTCTCTTCCATCAACTACCACTAACAGAACCTTTTTAAACATGACCAAAAAAAAAAAAAACCATAAAAATAATAATACATCT-AAGGGATATTATAAGATCATGATTCCTTTAAGGCTGCATGTGATATCATAAATTGTAGGAGCAAACTCAAGCAGTTTAGTGATAGGAATCCTGATATGAAAATACAGCTTTTATAATCCCCTCAGAGGATATTTTTTGGTCATAGTGGAAACTTTAATCATTTGGAAACACCCTGTTCCTACAGCCCTAG-AAATTACATTGGTCATTTGAAGAAT-AAAAACACCAGGCTTGTGTCTCAAAAGTGAGTTGCACTGATCATAAGAATAAAAGGAAAATGGCAGTGAAGTCATTATGGGTTATACTAAATATGGG-----ACTCTCTCTAAAATAAGAGTTTTGAGAGACATCTACATAATTTCATCTCTAAGAAGAGATGTTACAGGTGCAAATGCAAAGGCACC-AGTTGTATCCTGTAACATCAGGGCCAGCTTTTCATTAACA----TATAAAAGACATTTATAGTCACATGGAATGGTATACTCTTTACACTA--TGCCACTAACTACATAAACAAATGCTTCATGACAAAACAAATAAAATTAAATCATATGG-GTATTGAAACCCTGTATATTGCACATAATACCGTGATTGTGCATCACATTTGAATTCTGAG
s HiC_scaffold_1 137665843 1376 + 233722169 TTTCAgggttaaaataaattatttgcagTAGGTAACTCAATAAAGCTCAATGATTTTTTATGGTGATTTTCCACT---------TGTCCTCCAGAAGATATTTGGCATTCTTTCCAGATACACTGGCTTGCCACAGTTGGAATATATTATTCTAATAAAGTAGG-AAAGGGTCAGGAATGTC---ATTTGATGGCAATACATGGGATAAATTCCCCACAACCAGGACATTAAGTGTCCAGTCCACAATGCCAATACTTCTGAGATTAAACAGCCTGAAAAAGTTA-------------------CTTGGCTTTAAGACTTAGAAAATGACTGCTTAATCCCTGTGAAAGTGCTAATAAAATAACTAATTTCACTGACCTGGATTAAGAATTCACTCCGAAGAAAATGG-----------GACAAAGG---ACAAatctaaaatttcatttcatttcatctctACATACCAATATACTTATCAGCATAATTCGAAGAAGgaatcaatttcattaaaaaatgtgcAGTTTTCCTTA----CAACTACCCAGCAATTATctg----taaatttataaatttgaagAACAGAGTGAAGAACTCTGAGAGGTCTAGTAAAAGCTGGAACTTTGCAAATTTTGTACTTTAGTCCAGAAGAACTGCTGT-----AGGAAGGCGTATTTGTTAAGACAGAATTGCCTTTTAAATTGCAAAAACTCACTGACGAGGT-AACGCACAATCTGCTCCTCCATTATGTACCAGTTGCAAAACTTTTTTAGACAT------AAATGCAGGTaacataaagaataataatatatCTCAAAGGATATTATAAGGCTATAATTCCTTTTAGGGTACATGTAATGTCATAAATTGTAGGAGAAAACTCAAGCAGTTTAGTCATCGGAACCCTGAGATGAAATTACAGCTTTTATAATCCCCTGAGAGGATATTCTTTTGGTATAATGGAAACTGTAGTCACTTAGAAATACCCTGCTTCCGTGGCCCCAGAAAAGTACCATGGTCATTTGAAGACTGAAAAACACTGAGCAGGTGTCTGAAAATCAAGTTGAACTGATCAtaagaataatagaaaaattatattgaagTCATTATGGTATCTACTAAATATAGTGTGCCATTCTTTCTAAAGTAAGAGTTACAAGAGACACCTACATAATTACAGCTATGGAAAGAGATTGTGCAGGTGTAAATACAAAGATACTAAAGTGCATATTACTAAAGCTTAGCCAGCTTTGCattaaaaaatgtatgaaataacTTTCTCACAACAGGAGAAGACATGCTCTTTACATTAAGTGCCCATAGGTAAATAAGCagattttctaggtaaaagaGAATGAAGTTAAATAATGCGGAGTGTTTAAATGCTATAAAGTTCACAAAATATTTCAACTGTAGAG-ATGCTTAAATTATGAG

a score=8800
s chr3           151051178 609 + 160039680 ttcatctcagctccaaattttgtctATCTTTCAAGTGCCACCGGTA-CCTTGAGTTCTAAGAAGCAAAACCATCACCAGGTATCCTTAGCCCTTCTGCTTCTCAATAGGAAAAAATGGCCCTTGTTGCAGACTCCGTGACTTTAAGACAAGTCTAATGTCAAGTTAACACTGACCACTGGAAAGTGGATTCACATAACCTGGAGTACTTTTTCATTAAACTATGCTGTAAGGAAAAGAATTCTTTAATGGACTCATTC-AAAGCACGGAACTCAGCCAT----TCTACCAGTTGTAGATCACATACCCATCTAGTTATACCCCCTTACTCCTCATTAAGCATCCCAATACCCCTATGTGTCCCCAGAAACTCCATTGAACAGTCATGTTTCTAAT-TCCTCAGCTCAGTGTGATTTTATCCGTTCATAATAAAGCTGGGCAAGCTTCCAGC--------TCTCTGTAGAGCCCCATTGGATTTCTACACATTGACCTTAAAAGAATGAACATCAAACATCACAA-------CTGCA-------CTCTTGTGTTCGATTTCTAAAGGCACGGGGCCTCCACAAGGCACCACTGTATAATTTTAGTGATGGGCATATTCATATTCTTCTAACCATACTAG
s HiC_scaffold_1 137672021 599 + 233722169 TTCAGCTCATCTCTGA----CATCTTCTTTTCAAGTGACAGAAATATCCCCAAGTTACACTAACCAAGAATTTTTCCAGACTTTGCTTGATCTT-TGTTTCTCAG--GACAAAAATACTCGTGTTTGAGGGCCACAGGACTATCGGATAAACCTAATGCCAA--CAACTGTTCCCATAGGAGACCCCATTCGCATCTCCTGGTATTTTTACTCAATTAATTATGCTACAAAATCAAGAGCCTCTTATGGGACTCATTTTAAACCATAGAACTTACCAATAACTGCTGCTTTTAACAGATTTTATACCTCCCTAGTTAGGC-----------TGGCTGAGTTTCCT----CCTGTAGAAGTTTCTAGTT-CTCTCTTAAAAATTCGACTTTGTATTCTCCTCCGCTTTTGTTTTTTCTACCTGTTCATTATGATCCTGAGAAAATTTCCATCAAATAATGGCTCCGTAGAGATCCTTTGGC--------------ccttagagaaacagatttttaGTAGTATAAGGCTATGCtgcatttcttcctcttcaaAGCTATTTCTAAAAGTTCTGGCCCTCTAACAGGCACGGTTGTATGATTTTATGGATGGACATTTGCATGCTGCCCTAACTACACAAG

a score=40296
s chr3           151053517 1981 + 160039680 TCTCTCTAGCTCTTTCTTTGTCCTGAGAGTATTTCTTCTCAAATATTTTGAGTGCTATATCCTGAATCAATCAAATTGTAGCTTATGTGGAAAGCCTATTGAAGGAGGCCTCTCCTGATTGGTGTAATAGAAGATAATTACCTGATTTGTCTGTAAAGCATCATCTTATTTTAATAATCTGGATCATGATTTA----TTTTGTTTGTTTGCACATGCATACTTCTGAACAAATTTCATACTTGTTTGTAGTAAATATATTTTAACTTTGAATTATTATATTTATGTTGAGATTCAAACCTATGACAAGATAAATTAATAAGTTTAATGAGTCTGTTATTCTTATTCACCATTATACCTGCAATAATGTAGCCTTAGAAAACTAAGCACTGAATTAGATCAATTATATATGTAAGG-----TTAAAAATTGGGATAGCAAATTCTAGATAATCATGTTGAATCCTATCTTTGCTTTACTTATATGGACCTAGGTAGGAAACTTCTATTTTTCTTTTAAAGTACCGTATCGCAATTGTCATTTTACAATTCCCATAAAATTAAATCTGAAGATGAAGAAAACTAAAGGCTACAGTTAAAGCAATGGGTCATGTCCACTGTAATAGAAATTATTGAATGTGTCCAACCTGAGATGGTTTTTATCCCTCTTTATAGCGAGAAAATACATAGAGTGTTACAAACACGTAGGAAACGGCTTAAATTGTTGAGCTAAAGGCTGGCTTCTTACACTGCAATTTCTTATTTTATCACAATGACACAACATAAAGTTCAGAGCATATAATGGGGTGAGGAG---AAAGTCTTCCAAATACCTGGCAGGCGTATCTTTCAATTTAATTCACCTGTCAGCCCAGGCAATGGTGAGTGAACCTATTATTGGCAGTTCTGTTCCATGGTTACTTTCAAATGTACTC-CTTTCCCATTGGCACAGAA-CAAGTCACCACATCAAACAAGTCCTTCTTACTGTCTCCCGGGATTTATTTCTTGA---TATTTTTAAAGGGAAAATTCCCATCAGAACTATGTAATATATCACGTCTATCTCCTTTCGAA---ATTTAATTT-TGGAGCACAGAAAAGTAATGattttaa---------ttatttaattttcttataaatGAGAGACAATCTACCTATGCTCATATCATTCATCACAATGAAATAA-TTATCTCATTT---------------ATTTTATTTTATAAGACAGAAAGAAAGAATAATGAG------------GATGAGAAGATTCCAAAAAAGCAAAAAAAGGAAATTACATTTCTGATATATCCAGT----CTCCTTCGTCAGAGT-AGACATGAAGTTTACTGATTGAATTACTTCAT-TTTCCATTGCTGTAACAAAATACCTAAGGATGAATTGTTTTTAGAGAAA-GTTCATTAGGTTGATAGCTTAAAGTATCGGTGACTCAAGAGCAGGGATAAAGTTGTAGTTGGCCCTGGTAAAAGTCTTATTGTATA-AAGAACTATGACAGCAGAACAAATTTTAAATGTAT----AATACAGACAAGAAGCCAGAGGGAAGCTCAGAGACCA-TTTTACCCCTTTGTAATAACTTACACTGAGGTCACCTAGTCAGGGTATTATAAAACACTATGAATCTCCCCCCAAAGACAACATCCCTATTTACCTGCCCATACCCGTGTCCTGCAAAGCCCCATGGTCTACAGCTTTC-----------CCATTTCT----------TTATATGGTCAG--------ACTGTGAAGACAATCCCTTTGGAGGCATAATCAATCTATCTATAAACTGTAAGGACT-TCCCTTCCTAGCAAGGACAGACTTTAGTGCCATATAATTCTTAAAAGCTCAGCTACTTGGGGATGTATGCAATGAACACACTCAAGTACAGACA---AAAGCAGAAGCTAGACTGatatatatatatatatatatatatatatatatatatatatatatatatgtaaaactcacgactgtcatacaaatataaagatgatcatatattcagaattctatacaatcca-taat-acagtgcaaaggaagtgttac
s HiC_scaffold_1 137677010 1923 + 233722169 TTTCACTAGTCGTTCCTTTG-ATTAAGAAGATTGTTTCTCACATATTTGTAGGACCATATTCTTTATC---------GTGGCTTAAA-AGAAAGACTTTGCTGAGAGGCCTTTTCCAGTTA---TAGTAGA-GAAAATCAACCAGGTGACATTTAAGGCATCAT--TATTTTAATCATCTGCAT-ATAACCAACCAGTGTCACAATTTTACAAATA--------TGAGTgacttttatgttt---------aaatttattgtaACTTA----------ACTTACATTTAAATTCAAACTTATTCAATTACAATTTAATA---TTCACGAAG--GTAAAGACCATACCTCTTTCACTCTAAAGTGCTAAACcttttgaaaaatacttattGAATTTAAGCAATTACAAGATTAAGAAGATTTTAATGAATGGGTAA--AAATTCCAGATAATCACCTCAACTTTTCCTTGTAGCTTGCTTTAATAGTCACAGATCTGTTGCTTTTGGTTTTAT----AAGTGCGCTGGTACAATAGTCATTTTACAATTCCCATAAAATTAAAGCTGGAGATGAAGAAAAGTAAAGGCCACAATCAAAGTAATGGGTCATGTCTGCTGCAACAGGAATTACTGACTGTGTCCACCAGGTGATGGTTTCTATCACTCTTTATAGTTAGGAAATGCATAGAGCGTTACAATCGAGCAAGACATGGTTTAAATTGTGGAGTTAAGGAC-AGCTCCTTCCTCttcaaatctttattttatcACAATGACATAACATAAAG-TCAGAGCATATAATGgggtgaaaagaataaaattttacgGTCCCCTAGCAGGCATGTCTTTCAATTTAATTCTTCTGTCAGCCCCGGAAATGATCATCGAGCCCATTATTGGCAGCCCTGTACCACGGTCACTTTCAGGCTCCTGCTCTTTTCTGTCTATATAGAAGTTTGCCACCAAATCA------CTCTCTACTCTgtctttatgaatttcttt-ttgagattgttttttaaactaaaatctcCACTAGAACAAGGTG---------GCGTGTCTTAATAAGAAGATATTTAATTTGTTTCGTATGGAAATGTAATCATTTGAGCCCCAACATTTTATCAATTTCGTTATAAATGAAGGGTGGTCTGGTTATGCTCATACCATTCGTCATAGTAAGATAATTTGCTTCATGTGACACAAAGTAAGACAATTTACTTCATGTGACACAAAGTAAGAAAGCTAAGTAGAGAGAAACAAATGAGAGGATTATAGAAAAG--------GAGAATTAGATCTGTGA---GTCCAGTGGCCTTCTTTCCTTAAAGTCAGATTATGGTTTCACTGCTCACTGTAGTCTATGTTTgcactgctataacaaaatgcctgtGAGTGGATCATTTTTGTAAAGGTGCTTATTTAATTCACAACTTGCATTA-------------------GATAG------ATTTGGCTCTTTTAAGACCTTACATATATGTCATTTCTGCGTCAACAG--CAAATGTGGAAGAGATTTCAGAGAAAGGCAGGGAGCTAGAGAG--GGTTAGGGGCCAGGCTTGCTTTTGTATAATAACTCACTCTTTAA-AAACTAACCAGGGTTTTGTGAAACTACCTTAATCT-TTCCCAAGGCCAGCAGCCTCAATGA------TATATTCCTCTCCCACTAGACCCcacactttaaaattttcattaccCCTTACCATTACCACATCGAGGACTATATTCCCAGCGTAAGACACTTGGAAGACGGTCAC------AGAATAACCACGCCAT------------AGCACTGTCTCTTGTTGTCTAGGGCAGCACTTGACACAATGCCA--CACAGAAGCTCGGCTCATTCAGTATGTGTGCACTGAATATGTTCAAGGATAGATAAGCAAAACTGCAATTTGATTGTTAGA-AGAT---------------------CATTTTCCAACAAAAAGCTAAAAGTCATGACGCTCGTTcagatataaaaatgatcacatgtTCAGGATTTTATATAACTTATTAATGAGAAAACCAGTGAGGTGTTAC

a score=71658
s chr3           151065576 4775 + 160039680 [encoded data, 4966 characters]
s HiC_scaffold_1 137686863 4109 + 233722169 [encoded data, 4966 characters]

a score=50456
s chr3           151073848 1663 + 160039680 TAAACAAAATAACACATAACACATATGTTTGAGCATGACTGAGCAAGTTTAGATGTCACATTGtaaaa--aataaaaaaaaatattGTGAAAACATGG------GAA---AGTTCTGGTCACCAA-----------CAGATCCGATATT-----CAAATCAAACTGTCAGA----GAACGATGGTTCCATATTATGTTCATTAATTACCAAGTAATTTCAAAC-----TAGTACATTATATTTTATTGTTTTCAAATTACTCCATATAATATACTTTTGAAGGAGAAGCAGTGAGTACCCAGTCT---------------GCTAACAAGGATTTGCTGACATTTGTTACCATCCCAACATACAGAGATGAGATATATATCAAACACAATTGCATGTGC-------------CATGTGGGAGACAGAAGTTTGGACAATATATCTGTTCCTATTATTTGAC--ATAAATATAAACATTTTATTGAGAAGAT-TATCCTATAATGTT-TGTGCAAAGAATGATTGTGGGAAATAATTTCTGGCCAGAAAGACAAGCTGTAACATTAATGTTAAAGAATGAGACCTCCATGAAAT-AGGCTGAATGGATTAGGCAATGTTTATTGACTAATTGACTGTCTTATC-TATTACAGGCAGGAA----GCAGTCCCATGCAGTGTAAGTGCTCCTACGAAATGTTCAATTTCTTGAGAAATT------GCACATCCACCAGGAACAT---AGCACAGCCCTCTTGGTTAGTGGACACTTTAAAAAAACAATTGTAATTTATTT-AAAAGGCTGTGGTCTCTAATTTTTCTAATTACATATCAGATGAGATATTCATTTTGCCTCCCCAGATACCTATAGATAACAGTCTAGGATGTGTGCTTGCTGCATAAACTCTACAAGCCTCAGCAACATTAGATTGGCACAGAATGCAAAATTGAAA---------ACCTCCTGTAGGTAGCATGACTGCACCTACTTTTTC-AAGATAAACTCTTGAGAATGAAGAATTTTGACAGGTTGGGGAAAAAAAGCAAAAGGCATTTTTCTTTTCAATAGAAAGTACAACCACGGGTGCTGATGCCATTATAGCTTGAGAGCACGCTCTTAGGCATCAGAAATGATCTGGTGGGAAAATGGTG-GGGTTTAAATTCTGTTAACGTCACAGTCGAAAACCAATCCAGAAACTTAAATGCTAGGCACTTCAGTAAAGTATGTAACACTGTACATTGGCTTTGCAGCTCTTGACAGGAAGAACCACACATACCCATCCATTGACACGCACATCCCCTACAACATTGGCTAGATTATAGCTTACCTGTCTGAAATTGTGCTTCTAGCCATGGTTAGAGATATTTACGAGTCAGGTGGGAGCCAGGATGACATGAAGATGAGAGATCTTCCCCTCTTCAAGTCAATTCTCAAAAAATTACCACAACACTTTTATGCTTCTTATTTCT---CCCTCCTTTGCCTCAAGTTCTGTGTTGAGCGCCTGCCCTGCATGATTTTCCTTCTATATTACTTGTC-AAGCCAAAGATTCATAGAAACAATAAAGCAGCAACAAAAGTAGACAGGTTCTGTTCCACAAAGTTTTTGCAATTGGCAGAAAGAAAAGT--GTGAAGTCAGGGTTTTATCCCAGAGGCTTTAGAAAAGATACTGGCTTTCTCACTCTGAATTTGGAAAGTATAAATCAA---GTACAGTGGCATTCATTTGTTATTTATATGAGATTATCTATCACTTTT
s HiC_scaffold_1 137699231 1740 + 233722169 TAAGTAAAATAATAGAGATTTC------TTGAACATGACTAAGCTGGTGTGTATTCTGTGCCATagaatcactgaaaaaaaaaat---gaagacacagCCTAATGAATTTGGTCCTGGTCACCAAATTCTCAGGCTCACATCCAGTACAGGACAAGAATCATGCTATCAGATTTTATTCAATTAATTGGGCTAATACTCATTAGTTATCAAGTTATTTGAAGTAgctataaaacattatttattgtTGTTT-CAAAATACTGACTACAACATAGTTCCCAAGCAGGAACTGTGA---TCCAAACTCACTGCATATTAAAAGTTCACAAGGATTCTCTGATGTTTCATAACAACCAAAGACAGAGAG-CAAGTTGTATGATACACACA-TTACATGTATAATAAAGAGTATATATGAGAGAAACTGACTTTGTATCTATGAATCTTATTCTAGCATTTGGCTGAGAAATATAGAAAGTTTACCAAagaaatctgttttaaaatgttgcttaGAAAGAAGAATTATGCAAAATGATTTCTGGTCCAAAAGACCAAgtataaaatgaaagtgaataggTGAGACCTctgtgaaattaaacaaaatggatcAGATCAAGTTTACTTACTTGTCAATTACAGAAACATATAATGGACAATAAAATTGTGACTCCATGCTGTGTAAGTATTCACATAAAATGTCAGATTTCTTAAGAAACTTGGAAGACTTGTCAATCAtcaatttgaaaatgaaacactGTTGATT--TAGAAGTCTttgataaacaaataaaacttattttaacaGACTATGAACTCTAACTTGTCACGTCACACATCACATGAGTGATTAATTTTGTCTTCCCAGAAACATAAAAGGCAAAGTCAATAATGTACATTTTCTGCACAG-TTATAAAACCATCAGTGTCATTAGGATGACATTGATTATGGAATGAAGGGATTTCTCCATTTACTACCAGTACTACAACTGAACCTACATTTTCTAAGATAAACTCTTCAGCATTAGGAGTTTTGACAGCTCTGAAGGGAACGGAAAAAAGCAGTTTTATTCTCAGTAGAAAGTACAACCACAGGTATCAACGCAGTTATAGCTTGAAAGCATATTCTTAAGCACTGAAAATGACTCAGTGGGGAAATGGTGTGGGTTTAAGTTCTGATAATGTCACAGTAAAGAACAGAGCAAGAAAGTTAAATTATATGCACTTCAGTAAAGTA----ATATTGTACATTTACTTTGCAGCCCTTGACAGGTAGAACCATACCTGACCCTCAGTTGACACATACAACTCCTGCAACATTGGCTAGATTACAGTTTACCTGTTGAAAATTGTGTTTCTAGCTATGGTTAGAAACTTTCCAGAGATGTATGAGAGGCTACATGACACAAAGATAAGACATCTTCCTCTCTTTAAGTCACTTTTCAAGAAATTACTATAACACTGTTACTGTCCCTGACTCTAAATTCTCCATCGCTATAAGCTCTGTGATCAGCTTTTGGCTTGTATGATTTTCATTCCA---TACTTGTCAAAGCCCGAGATTTGTAGAAACAATAATGTGACAAGAAAAAGCCATAGAGCCT-TTCCAAAAAGTTTCTACAACTAGCAGAAAAAATCTTTGGTGGATATACATTTGCCTCTCACA-GCATTGGAATGGATTCTTGATCTCTCACACTATATTTAGTAAATACAAATCAACTGCTACAGTGGCTACTATTGCTGATTTACATGAAAATatctgtaaatttt

a score=45178
s chr3           151076859 1379 + 160039680 TTTTCAAATCGCTCACTGTGCTACCCATTTAATAGGTTTCTACTTTCCCCAAGTTAAAGCTACCTACTACAGTGATGACTGAAAA--GAATTGAGTTTCTGCTTTACTAACAAAA-CTCCCTAACACCATACTCAGAAGAAGTCGTCAAAGTT---ATTAGACCTATGGGGGCATCAGGAATCAATGTGATAACTGGAGAGTGTTATCCCCAAGAATCTTATTTGCGACCTTCATAAGAAAAATCCTCTACATTAAAATCTAATTTCTATCATCAGGGATCAATTTCTCTCCTTTAGGC-AAAATATTCTGCTCAATTCC-CAAAGAATACTACAATCATTTCATAGCCCATTCTTGGAAACATAAAATATAA-GTGTCCACGTACAGTTAATGTACCGGATAAACTGTTCAGGAGAACATGCATGGTCAGGACAAATTTAACAATTTCTCAAAGCATTGATGGGTTTATTCTTTCCTTGGTACAC-AGAAATATAGTTTATTTTCTTGTGATCATTT--TTTATTTGAATGTCTATTAGGAGAAAGACTATGGACATCCAAGAATAACTGTAATAGAAATAGTAGACTAGACGATAACAATAAAATGGCCTTATGTTCATAAAGATTCATGCCTTGCAATCAAACTAAGTATGAGTACATTATAACCTCAGATTGGTTCAACTTCTGTGTCTATGTTAGTCCCTTGGTGCCTCTGATAGGTGGGTTGTGACTTCCCCAAATCACACATATTTAAGTCTCTAAGCCATATGAATTTTATAAACTCC-CAAACAATATAGCTCCCTCTGCTGTCATTAAATCACAGAAGCACAATGTAAATAGAAGGGGTAAAAACA------CTTCAGATATTCTTAAATAAGATCTTTTAAAACACTAGTTCCGGAAATACAAACTGAAAAAATGCATTGCCCCATAACAACAAACCAGACATAAACCC--AGCTGCATAAAAGTGCAGTAATAAAAAAAA-TGACAGAAACTATAAAGGTTTGGATCATAAAATCTCCTTGTTTTGTGTTTCATATTTCTTTGAGATAACCTGCAACTTTCACTGGTAATGTGCC--CATAAAACCCGGAAGTGGGTTATTTGAATTTATTCTAGTGAATGCAGCTTAAA-ATTACTATGGAAGAAATTCAGGTATTTCCCATAATGAAATTTGAAGAACAACAAACACGTGAGACCTC-------------AGATAGACACAGGAACAAAGCTTACA--TCATAAG----CCCAAATCTCCATGCTGAGATCTCATCCTTCCACC-------TGTGTACTTTTGCTTCATGAAAGGGGGTGAACT-----GTGTTTCAGCTAGACACCCCTAATCTGTCAGTGTTCTCAGTCCCTTCTGAGAGCTGGGACAAGCTCCTCACGTACCTAACCACTTCTCAAGC
s HiC_scaffold_1 137707251 1396 + 233722169 TTTCCAAGCAACTC-TTATTCTACCTAATCAATAGTTTTATGCTTCCCCCATATTAAAACTATCTACCTGAGTCAGAATTGACAGTGGTAGTAGGGCTTTTTTTTGGTGTTATAATCTCCCTGTCATCATATTCAGAAGAAGATGTTAGAGCTGGTATAACACACTGAGAAGCACAAGTAGTGAGTGGGACAATAGGAG-----TGGTCCTAAGAATCTCATTTATGTCCTTGACAATAAAATTCCTCTATATTTAAGTCATATTTCTATTTCTAATGATTAGGTTCCCTCCTTCAGGCAAAAATATCTTGCAGAAGTCCTCAAAGAATATTGCAAATA-TGCATTGTCaatgtttgaaaatataaaacctaATGCATCCAACTGAAGTTAACATAGTTAATTAGCTATTCTGG-GATTGTCCATGGTCAGGTAAAATTTAAcaatttcctaaatatttgaaTTGCTTACTATCTCCTCAGTAGACTTGGAATACAGATT-TTTCCTTAGGAGAATTTCATTCTTTCCAATGAATATTATGAGGAA---TAGAAAGTTTTAAGCCTAAATTTAATGCAAACACAAAAATACAAGATGGTGATAAAATTATCTTACATTCAGCAAGATTCACACTCTTCAATCAAGCACAATGGGAATATATTATAAACTCAGGTTTATTCAGTATCCATGTCCCTGT----------ATATAACTGATAGGTGGATTATAATTCCTCACAAACACACATACTTAACTCTCTTAAcaatatgaattttataaactCCACAACCTATATAGCTCCCTTTATTGTCATTAAATTATAAAACCACAATGTaaatagaaggggaaaaaaaaaacatgcttta-CTTTCCTAAAATAAGATC-TTTATAAAACTGGCTCtagaaatacaaaacagaaaaatacattgcCCCACAACAACAAACCACACATAAACTCAAAACTGCATAAAAGTGCAGTAGTAAAAAAAATTGACAGAAACTGTAAAGGTTTGGACCATAAAatatccttgttt---------tattttttttagataaCCTGCAACCTTCAACTGAAATATATCATAAAAAAACCTGGAAGTGAgttatttgaattcattttagCAGATACAGCTTAAATATTACTGCCAAAGGAATTCTTGTATTTCCCACAAATAATTCCAGAGAGTAACGGTACAGAAGAACCTCAATTTTAAGTTCTAGTTATGTAGGGGAGCCATTGCCACATTTTATAAGGGGCAACAAATCCCAGGAATGAAATTAGACTCTTTTACCAggttattttgtacttttgcttcacTTAAGGAAGCTGATTTCCACATGACCCACCAAAGGCCCTTTTATCTATTGGTGGCCTAAGCCCCTGATGAGTGCTAGGAAAGGTGTCTTAC------AATCTTTTCTAAAAC

a score=9868
s chr3           151096942 529 + 160039680 TCCCAACAATATACTTTACCAAATTTATGTGTTAAATACAAGTAAATACTTAGAAAACATTT----------------------------TTCTGCTTCAAAATTGTAACAGAAACTAAATGTTCAG----------------ACCAAAGTACTCTGAATAATTTCTATGCTTAGAGGTAATTTTTCCTTTAATATCCTCATGCTCCCGTATTTCCAGACTTTGACATCTTTTAAAATTTAATTCCATCTCTGAAAAGGAAGCACCTAAATGTTTTTGTTATG--------------------------------------------------------------------------------------------------------------GAAATTTTATCCAGTTTAT-GTCTCTAAGTATGGGCACTTTGGAAT-CAGGGGTC-TTACTTATGTATAAGTCATTCAATACAGAGAAGGTTAACAGTTCATTCATGGATCTATGATTTTATAGTTTGAGGCAAAAGCTGATATTCTTGGCCATAATAA--CTACTTTT---TCAAATACATTTCAGG---CTATTCCCTTTCAAAATATTCTTTTAAATGCTTTTAAGTTTATGGAATGTAAATCATAAA------AAGCCATGATGTACTTTTGATTACTTAGGAAGGACACTCCATCTGATTCT
s HiC_scaffold_1 137718840 682 + 233722169 ttcccacaacatatgtaacca---ttatgt----actgcaaacatgtacttaaaaaatttttaaaattcaagcagTTTCGAAACTACCTTTTCTTCTTCCAAATTTTAATAGATGCTAAACATTCAGGAAAGACACCCACAAAACTAAATCCATTTGTATGGTTACTATGACTCAGTGTA---TACATTTTAACCTTCTGCTATTGTCATATTTCTAGGATTTGAAGACTTTTTGAACTTTCTTCCACCACTTGATATAAGGTacttaagttatttttttttgtctttttcatttttattggtaccagggatcgaactcacgactgcctgtttgcaaggcagccgcttatgccgctgagctaaattcccagccccttaagttatttttattacaaaattttatCCAGTTTTTTGTCTCTAAGCATGCATACTTTTGAAGACATTGCTCCTTAATTATGtataaattatt----atagtaaaagtcaTGAATTTGTTCATGGATCTATAATTTCATAGTTTGAGACAAAACCTGAAGGTCTTAACTAcaataagtttatttttatctgaaaaatatttttggaatctttttatttccaa---atccttttccctctttttaagaATATAGGATGAAAAGcactaaaattataatttatattgtaTGTTTAATTGTTTA-GCAGAATATTCCATTTGATACT

a score=13168
s chr3           151099915 643 + 160039680 AAACTATACTTTGGTTCAAACATTCTTCTATGAGCTAAAATTAATGGGCAATTAAATTAGAGTAGTGACAAAAAGACATTTTT----ACAATTTATTTAAAGTGAAGAAAAATTTACA--AGTCCCCTCCTCAGTATCATGT----GTTTTCAGACTCCTTTAATGTTGCTTAAAAGTAATTAAGTGTATTTTCCTTGGCTATCCTAGCACC-----TGTTTTACTGTGATTACAAAATTTAAATCCAATTTGAATTTTTATTTAGACTTCTGTGTCTACATTTATATGATATCTTATGTCTTATATGTTTATGTTCTGAGAAGCAAATTATCCCTTTGTTTCAATGTTGTATCTTCTATGTTCTATAATTAGAACAAAAGACTGCACATGCAGAGACATTATAAAAACCATTGGTGGTAGAAAAT--TGAACAAAAAAACCAAATA------ATTAGACTCATGTGTGAAATTTTAACTGAGAAAAACTACAGCAGAATTTTAGCATTCTTTAAATTCTTTAAGAGGGCTTGATCACAAGTAAGTTAGACAT-AGACTTCTGCAATAACAAAGTagactgg-----------cagtgtgctagagccagcatgccaaggcttagtaagaatgaatatcaacatgtgacattcaaattacaaaaaccaactttacaaa
s HiC_scaffold_1 137722078 632 + 233722169 aaattatgttttagttAAATAATTC----ATGATTTTAAATTAGTGACCAATTTA-TTATAGTAACTGGAAAAAGAAACGTTTCAACAAAATTTGTTAAAGATTGAAGcaaattttctgtaattctgtcttGGTTGTTGTGTTATAATTTTCAGAC-AATTGAATATAGGTCATATGTAATTAAATACAT---CCTGAACCAGcc-agctgcatgtatgtttgtatgTGGTTATAAA-TTTAAAGcgaatttgcattttcatttagcCTGCAGTGTTT-CATTTATATG---TGTTATTTCTTACATTCTTATACTCTGAGGATGACATTTTCACTTTGATTTAATATTATAACTTTAATATTCTGCAACTACTACAAAGGA---CATATGCATGGGTTTAAGAAATATCTTTGATGGTTGAAAATACTaaacctaaaaacaaaatattgaatattaaGGTACAGTCATAAAATTTAAC-AAGAAAACCTATAAAAACATACTG-----CTTTAAAATT-------GGGAGAAGTCACAAGTAAGTTAGACATCAAACTCGCAAGATAACTCAATAGGctgagaaaaagaactcaacttGTAAGAA----------AAGGATTAATAGAGATAAATATCAA-ATATGGAAACCCAGT----AAAAGCAACTCTACAAA

a score=101492
s chr3           151110386 4098 + 160039680 [encoded data, 4337 characters]
s HiC_scaffold_1 137725370 4097 + 233722169 [encoded data, 4337 characters]

a score=164935
s chr3           151115754 8975 + 160039680 [encoded data, 9580 characters]
s HiC_scaffold_1 137731066 8382 + 233722169 [encoded data, 9580 characters]

a score=42780
s chr3           151126228 1593 + 160039680 TCTGATTGAGAACAGGCTTATTTTTTGAATGTCCACCTTTAATGAACCTCACAAATTGATCCTGTCTGCACTGCATATTAC-TTTACTGAGAACCACCCAAACATCAGACGAGTGCTTCTCCTTCAGGCTCCGCTGTTAGGGGCATCACATTCCCTATTTAGCTGGATAATAAACTTGCTTCCACAAATGGCTAAACCTGTGTTCATATGTGCATGATGAGATTAGTGTTTACGTAAGGGGTCTGGCTCTGCTTACTAATGTGCACTTTACAATAACCTAAGAAAACAAAAACAACCTTTCCACTCCTAAGAAAATGGTAGTTGTGATAATAATTGCAGCAGTTTTAAGCAGCGTTGCTTCTGCAGACTTTACATAAATGCACCCAGTCAGATGCATTTGTATCCCAT-GACTATGAGAGGACAGTTTCTTTATGCGTTCTCCG--------------------TCACTGTCTGTGCCACAGGACTGTGGTGACAGGCTTTCATT-CTGCCTGCTCCAGCTTGGGCTCATCTCTACCACATGGTGGTTAATGTAACCTTGTTCC--TCTCCCGC------------TTCAGCACCACAGAGATGGCGTTTCATAGACAGCTATTTTTACCTCTGTGTGGATGTTTAACTTTGCATTCAGCTTGAGGAGAGATGCCACGAGGGCTTTGTCCTTCAAAGTGTGCTATAATGTTGCAGCTTCCCTTTAAAGTTAATTGTATGCTTCCTTGCCACTGATTAGATAGATGTCTCCTGTGTGTCCATGATAGACCCTCTCC-CTTTACCCTGTTTTGTAGGGTCAAATTGCATACCACAGCTGTTTTGAGATCTTTATAATTCAGAAATTCTGAATGGAGCTCTTAAGGAATCAAAGCATGGAAACATATTGGGACAAAACTGTCAGAAATAAACTAAATACAAAGCAGGAAACTATTTCATGAA-CTA-TCATTTTTCATATATAGAGTGGTTTATGCCTATAACTGCTTTATTGTGTGAAATATAATATCTAACCAGTGTCAGAAATGATAAGATCTTTTCGTGACTTGAAAGGCTTGAGAAAATTAAGATTAAATAGACTGTTATCTGCATTTACCATGAGAATGGATCTAATCATTGTAGGCCAC------TATAAA-AAATCATAATTATCAAAATCAAAGGTGTTACTTCAAAGA---TATCAGTGGTTTGTCAACCAGGGTATATCTATTTTTTTCTGACTAATGGTATAGTTGAAGGTTCAGA----GAATATAAAGTA--AGAAATAAGTCTGA-------ATATATAAGAAAAATAATTTTCAAAGGGGAAGAAAT----TACCAACTATTGTAAGTAATCTGTAGCAGAATTGTTGCCCAAAGGTGGAAGTGGTAA---GTGAAGCAGACATGTGACTGTGAATCCCCGGATTCTCAATGGCTCTGGAGCAGATGCGG--GGTCAGCTAAGGTGAGGATGAGCAGTGCTAAGTGCT----------GACACACCTGCTTAGCAGTTGTATCTGCATGAA--TATTTCTTCCTC-------CCCATTTCCTGAGAGTTTACCTATTGTTTCCCTCTTTGGAGAGCTATGTGGTTTAATGCAGAATTTCAGTTTGTTCTACCCAAGGTCCTGAAGCTGTG----CTAATGAAAAGCCATTGACAg
s HiC_scaffold_1 137739822 1598 + 233722169 TCTGATAGAAACTAGAGCTATATTTCAGAAGCACATACTAAATACAGCCCACAAATTGGACATTTCCATACTGCCCATTATATTTACCCAGTACAAACCTGGTACCAAATTA-CGCTTCTCCG-CACTTTGTTCTAATAGGAACAGCAAACTCCCTATTTAACTGGATAATAAATGAACTTTTA-GAAGGCCTAAATGTATGTTTACACACACAGGATGAGATTAGTGTTTACCTAAGGGGACTGTGTTTACTCACTAATGTGCACTTCCCAATaacctaagaaaacaaaaacaaccttcTCACTCTCAGGAAATCGGTACTTGTGATAAT---TACAGTGATATTAAACAGCCTCGTTT-TCTAGACACTACAGAAATATGTTTGGTTGAGCACTtttttggttcattgtctaggggaGGA---TTTCTTTATGT-TCCTTTGCTTGGGTGGCTGTAACATTATTGCCGTTGACACCACAGGACTTGCGGTTCAGGCTTACATTTCTGTCTGCCTCAGCTTTTGCTGATGCACACCACATGTTGGTTTACCTGACAGCATTTCAGTCTCCCTCCACCCCCAAACATTCAGCATCACAAA--TGGCATTTTATAGACAGCTATTTTTGGGTATGTGTGAGTGTTTAACTTTGCATTCAGCTGGAGGAGACATGTCATGAGGGCTTTGTCCTTCAAAGTGCAATGTTATATTGTTGCTTCCCTTTGAAGTTAATTGTATGTTTCCCTGTCACTGATTAAATAGATGTTCCAAATGTGTCTATAGGCAGCCATTTCTATTTTCCCCTGTTTGCTGGTGTCGA-TTGCATATAACAGCTGTTTTGAGATCTTTATAATATGGAAATTTTGAAAGAAGCTA----------------------------GGGaccaaaataatggaaataaaatcagGCCAAAGTAAG---TTATTTCATAAAGCTactaattttccctgcatagaaTAGTTAACACTGACCACTATTTTGTTGGATGATATAGAAACTATAACTA-CATTAGAAATAATGTGACATGTTTTGAAACTGAAGAACATGAGCAGAGTAA---Caaat------ttttctatattaatt-tGATATCTGATGTAATCACTTTTGACCACAAACATTATAGATAAATGATAATTACAGGAATCAAAGAGGGTGCAGCAAAGATGCTACCATTAATTTGTCTACCAAGG-AAAGGTATGTTCTTGGGGTCACGGGTATCTTTGAGAATACAGATTAGAAATACAAGATAGTGAAAATAAATTCGAAAGAGTCACAAAGAGGAAAAGGATTTTTATAAGGTGAAGAAAGAAGATATCAAAGATTACAACCAAACTCTGGCAGAATTTTTGACAAAAGCTGAAAGTAGCAATGTATAAAGGAGATGTGCGATCAC---------AATTCCAACAGCCTTTGgggcaaaagaggaaaataagc--aAGGGGGGAAGGGAAGTGTTTGGAGCCATGACCCTAAAACATTCCTCATT--------TACATGCATGAAAGTATTTCCTCCTTAAATAcacatgttttctcatttttca-ttatttcctcaCTTTTGATAGAGATA--------AAAGGAGAATGCCATTTTCTT-----CAAGGCTGTGTAACAATGGAGTGTAATAAATAGCAATTGGCAG

a score=135484
s chr3           151129264 7351 + 160039680 [encoded data, 8210 characters]
s HiC_scaffold_1 137741741 7312 + 233722169 [encoded data, 8210 characters]

a score=42125
s chr3           151142977 1499 + 160039680 attttaatttcaatttattttatatttatttgatttatgaaatttaaatCTATCAATTTCAGCAATAGCGATAACTGTAATTGTTCAGCATTAAGCTTTATGAATTCCTTTCCAATGTCAAATACTACCTGCTCCTGGGAGATTCTTAGGACAATTGCTATGATCAAGTACAATATATATATATATATATGAAGTATATTTTTCATGCTATAAAACCCTATGCTAAATTACAAGGTTTTACTTGAGAACTTACATGCATTCATTTTTCACCCTATGCTTGGAAAGTACATTATATTAACAAATAACATAGC----ACAATGTTCACTCATAACTGAATTTCTCCATAAAATTT--GATTTGAAAATAGACACTG----AAACACTTGAGTGATTGGAAATGAAAGAAATCCACTTAGACTGGAGCACTTTATCCTTGTGTATTCTACAGAGGATGCACACAGAGGTCTCACATGCAGTGTCATAGGCAGAGAGG----CAGGCCTTCTGCGTGTCAGTGCTTCTTGATAGCAGG--CAAGATAACTCCTTTAACTTATGTGATCCAAATAAACTCTTGCCT-----ACCACAAGCCCTAAGATATCCTCATCTTCACCATAATCTAGAATTTAGCAGTGTGAATGAACGGGTACAAAAGAACGCAGGTCCTGAAGCCTAGCTCACTGGCTTATGGCAAGTGGTACAAATGCTGCAAGAAA--AGATCTAAGGCTCCTTCCTCAACAACACAGCAAAGACACT-GTTGTCGCCTGCTCAT-------------GTCCTCCAAGGCAGCCGTGGCTGCAAAGGCTCCGTGGTCCTGAACAGCACTGCCTGCGGCACGTTCTGCTGGAGTGTAATAGAATACTGCATCACTGCCGTATTTTTTAAAGGCAATTAATATTTTATTATGCAAAGACTTTTATTTGCACCATTTGGATTCTTCTTCTCTAATTAAATCTTGTGATTTACACAAACAGAACTGAACAGTTCTTTAAACTCTGCAAAGTATCAAAATTAACAAACACTTGTTAAAACGAAGCAAAAGCAACCAAGGGTCCTA-TTTTTGTGGCAGAAACAACTGGAGGTTACAGAGTGAGCTTAT-TTGTCTCCTACCTGAGTGGGGCAGTGTGGCAATTCTGTACAAAA-TACTTCAGGTTAGTACAACTGATAGATAGCCCAGCTCTCTGTGAGGGAAAGGTTAATTCTTTGAATTAAATgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgagCATTTTCATATGCCGAAGTTG------TTGTCTCAATAACCTATGGATAGAATTTTGCATCATAGAATTTACAAATCAAGAATGTGTTTCTAGGAATACCTTCCTCCA--GCTGCATTTGCGGGTTTCTTCT--AGATCAAATGATCAGTCTTTACAGGAGACAGATGCTCATTAGGATCTGAAGCCTTGA---------------TCCCTTT--GGGTGCTAAaagatccctctt--gaatgttct-----------ctctctctctctctccctctctcc
s HiC_scaffold_1 137758838 1476 + 233722169 attttatttttaacttctctttatgctattttctttatgaaaattaaGCATAT----TCTAATAACAATCCTACCACTAATTAGTCAGCATTAAACTGTATA----CTTTCCTAATGTAAAATATTACTTGATCCTTTAAGATTCATAAGAGAATTACAATTATCT-----------TAtcaatatatttgaattatatatTTGAAACTATAGAACACTGTG---AAACGAATGGCATTACTTTGGGTCTTGCATACATGTATGTTACACtctatatttgaaaa-----ttatactaccaaATAATGGATCGATCACAACTTTCATCTAACACTGAagttctc---aaacttttcaattttaaaagaattgctAGTTAAGATATAAGAACGATTAAAAGTCAAA-CTACCCATTTTAATTTGAGCACTTTGCCTTGCTATATTGGACAGCTGGAG-AGTCAGCAATCTCAAGAGGAGAAGCTAAATATGAGAGGTCATCAGGT-TTGTGAGTCACAAAGCTGCTAGATGGCGGGACCAAAACAACTCCGCTAACTT---TGCCCCAAATAAATTCTTGCCCTTTGAAATACAAATCCCTGGAT-------TTTTCATAGCATTCCAGATTTTAGAAGTTCATAGGTACAGGTACAAAGGAGAGTGAGGCTAGAATTCCAGCCAATGAGTTTACTACAAATATTCCACATCTAGCGACAAACAAGACTCGAAGCCTCCTTATCAGTGGTG-AACAGGGATGTTCGCTGCCCCATCCTCACTGGGTCACAAACAGTTTTCCAAGGCCGC-GTGGTTACAGCCAAGTCATGGCACTGTGCTTTGTTGCTTGCAGCACTTTCCACTGGAGTGTAATAGAATACTGGAGCACTATTGTATTTTT-AAAggcaattaatattttattatgcacAGACTTTTATTTGCACCATTTGGATTCCTCTTCTCTAATTAAATCTTGTGATTTACACGAACAGAACTG--CTGTTCTTTAAACTCTGCGAATTATCAAAATTAGCAAATACTTGTTGAAAGGAAGCAAAAGCAGCCAAGGGTCTTATTTTTTGTGACAGAAACAACCAGAGGCTTCGGAATGAATTGATAGTGCCTCTTACTTGAGTGGAGCAATGTGGCAATTACATGTAAAATTACCTTAGTTGAGTAGAACTGATAGAAATTCCAGCTGTCTCGGGGAGAAAGgttaattctttaaat------------------------------------------------------aaataaagccagagTATTTT-ATGTGCCCATGTTGGATTTTCTGTTCCGTGACCTTGTGTGCAGCACTTGGTGTTATGGGATTTATAAATCAAAAGTGGGGTTCCAGGCATGCATTCCCCTAGGGCTGCAGTTGTAGAATGTTTCCTAAGGCCAAATTAATAGTCCTCAGAGGAAAGAGCAGGACTGTAAGCTCCAAGGCCATAGGAGAACATGTCTCTCTCACTTTTGGGATCCTAAATGACAGTTCCTAGGAAAGTTTCAGTGGGTGTgaccctccctctctccccttccaCCC

a score=76602
s chr3           151151194 2782 + 160039680 TCATAAAATTAGCTGAATAGTCT---ACAAAAG--------TTTTTCCTGGGTCGGAG-AAAATAATATGAGGGAACACCAAAAATACTATCAGCCAATTCTTCCTGCAGTTGCCGGGGGTTTAAAAGCCTGCTAGGATGACTTGCAGACTGTTTATATAATAACAGTTTGCAGACCCTTCTAATTTATGAAAT---CTTAGTTTAGTCAAATTAAATAGCTTTATATAAAATGCAATCCAAATTTAGAATTATTCTTACT-----------CCTAAAATCCAATCCAAATGCTTAGTAGACAAAATAGGAAATTTTAATATATTAATTCAATGGAAAGAATAAATGAGC-CCTTTGTTTGATTTTAGACATTTTAACAGAAAGA----GTTCTGATTAAATATAATAAGTAGTACTTTCTATTTTCATTACTTCATGCCTCTTTATTCTTCCCTTCAATTTCTGATTGACTGATTCTTACATTAAAAATCCAATTATCTGTATGCAAGAGTTATCCAAAATATTTGTTAGTAAAATAGGGCAAAAATCATTTTCTTTCTTTAATCTATGTCTCCAAAATGGACAAGGAGGTAGGTCAAATCAAATGTAATTGTCTGCACTGCATTCTCTAATGGACAGACTTTTACACCTTAGACCTAATGTGTATGCGCAGGCCTCTTGAAAATAGCATGCTTTGAGCTAATGATGTGCATGGCTAAATATTTTTACATTGGCATGACatttataaattatattttaatattacaattattttaGACGATTGCCCTCAGTGCCCTTTTATTTTTAGAAAACATGAAGTGTGCCTGGCCCACAGACACTCAAAACCCAAGATGGTCCAAATAGGACTCATTATGTTTCCATTCCCGCCCTGGTGC--AGCTCCTCTCTGGTCCCTTGCTCCAATAATGGGACCAAGCTCCTCCCCATCACACAGGCCAACCAACTCCAGTCACCTTCCTCTCTGACCTCTACTGAACCTCTAAAGCCAATCAACCAAATCTGCTTGAGTTTGACTTTGAGAAGTTTTTGGAGTTTGT------TTTCTAATTCCCAGTCCTCACACCTCCCCAATTCAAGACCTAATGTGTTAAAGACCTCAGGTATAACACAAAACCCTGTTTTCTAAGTTCCCAGGAACTTGGATGTCCTCTCTCCTAGTACACTTTAAACATTGCTAGCATTATCTTTTTAAAACATAGCTGTAACTTGATCATTGAGAAAGGCAAGAGTGCACAGGAAATGTGAAAGAGAAAGGGGTATTGGGTATAAAAGTAAATGCATACAGAGGTCTAGGAGATAGAAGAGAAGGCCCATGGGAGATAGGAGGGATAGACAACCAAAACCATGTGAGAAGTAGGTGACCTGTTACTCAATAAAGTAACCAAAAATAAAATAAAAATAAAGCACATAACTATGAGTGTCACACTACGTGGAAGCTTCGCCACTAGAAATACCATTTACAGACAGGGAACTCTTAGA-TCAC----AAGCAATCTCTATGCAGGTGTTTGCTCTTTGCTTGATTGGTAAATTTTTAACAAT-------------GTCCAAATACATCACGAGCTGTCTAAAAATACTCTTTTCCTTTCTTGGGTGACTTTCTTTTAAAGGCTAATTGAATGTTTACCTTGTCCAGACAGAGGTGACTTAACCTTTTGTCATA--GCAGTTCCCTCCACCATTGGAGGGACCTG--------ATCAACTTTGTTA--CATGAGTTCCTACCAGTTTGCTTGTCCTTCTCTTATAAAGATTGTTATCATCTAAGATAGATTGAAATTTCTCAGACATATGCTTTGCAATCCCAGTAAAAAGAGGCAGGGCTCTTTGAAAGTAAAGACTTTGTCTTTTTGGTGGTGATTTGCATGTACAGAGTATATTTTAGATTCAGGCTTGATAGTCAACATTTT--GCTTATGTGC-AGCCACTATTGATGCTATACTGACTGTATTATAAGGAATAATATTGTTCAGA------------------CTGGCATTTCTATGCTAT-AATGGCAGATAGCAATCCAAAGGCAGTATTAAGAGAAAGTATACAGGCCTCTTGATGTGATAATGGGATTTATAACTTTTTTCAAAATTATATGCTTTAGTATAATTCATCTAGTTTGTAAAAAAAAAAAAAACAAGAacaaatacacagacacacatttacagacacccacatgcagtcacacacacatatgtgtgcatacacacacatataatatatatgtattttatatatatattcaAAAACCTAATGAGGAAAGATAGAGACAGATGGAGTTCAATTGGCTAATTTTCTGCCCAGCTGCCTTGATGAAAAACAGAGATGTTCTGACCCTACGTTCCTGTGTGCTACGCTGCTCAAATCCTCAGCCTTCTTTACTGAACCATTACGTCAAGGCTGAGTGGCCAGGATCTAGATTAGCAGACACCGTTCACCTGCT-GTCCCCTTTGTTCTCAGTTCCTAATGTGAAGGAAAGGAGATCTAAAATTAGACCAGAGCCTCACAACTGAATTGAATTCCTAAGTACACAATTAGATCATGG-GAAATGATTAAATCATTTAACA---TTTTTATGTAGCTCAAAACATAATAGATGCATTTT--AAATTCCTTGCTCTTTCTATACCTTTCTGTACTTTCAAGTTG-------TTAAAAAGCATTAGCCTCATTAAAAAAAAAGCACATTTAACCTTTAAAAATCAAACAGACTGAAGATTCTCCTCATATTAAAATGAAGTGGGAAATTATTTTCATTTTCATGGGTCATT-CAAGCTTCAAATAATTTAATTTCACCTCCTGTTTAAATAGTGTGTGCAGACACATTTACAGT
s HiC_scaffold_1 137766980 2515 + 233722169 ttataaaatttattttataattttttacaggaggattttttttttacttgagtaGAGGTAAGAAAATGCAagtgaa----aaaaactttaaaacgTGATACCTACTTTGGTTTCCAAAGTTTTAAGAA---ACCAGGATGATTTAAAGACTGTTTGCATAGTAACTTCTAATTACGCCCTCTAATTGCTAAAATATCTTTGATTTAATCAAATTCGATAGTACTACATAAAATAGGTTTGGAATTTAGTGTTAATCCTACTATTTACTCTGTCCTGCAATCCAATCCAAATATTTAGCAGTCATAATTAGAACGTTTCGTATAGTAATTTAATGGGAAAAGTTACTGAGCACTTTTGTTTGActttagacattttaaaagaaataagtggTCTTCGTTGTAACATATAAGTCATTCATTCTATTTTGGCTAGTTAAAATCCTTTTATTCTT------AATGCCATATTAA----TTCTTACATTATAAATCCAATTATCTGtaaataagaattatataaaatatttgttggtaaattaag-caaaaataaatttccttttttattccaagCCGCCGAAATGTACA-GGCGGTAGGTCAAATCAAATGTAATTGTCTGAACAGCATTTCCTAATGGATAGACTTTTACACCTTAGACCTAATGTGTATACATAGGCCTCTTGAAAATAGCATGGTTGGAGCTAATGATGTGCATCgctaaatatttttacatcagggtgaca-ttataaattatattttaatattacaatTATTTTAGATGATTGCCCCCGAagcccttttatttttagaaCGTATGAAGCATGCCTGGCCCACAGACACTCAAGACCCAAGAGAATCCAAATTGGACTCCTGATCTTTGCACCCCCGCCCTAAAGCTGTGTTCCTCCGTGTTCCCTTGCTCTAATAATGGGGCCCTTCTCCTCCCACTGGCGCGGGCTACCAAACATCAGTCGTCTTTGGCTCCAACCTCTCCTGACCCTCTGAATCTAATCAGCCAAGTCCTCTCAAGTTTACCTTTGAAATGCCTTTGGAATTTGTCCATCCTTCATACTTCCCGCTCCT------TCTGTGGGTCAGCTCCCAAT-TGTTAAATGCCTTCAGT-TATTTCAGTAGCCTGCTCCCTAA---------------TGCGGTCTATCTCCAAATATGCTTTTTACATTGATAGCCTTATTCTTCTAAAACGCA-------------CAT--AGGAAGGCACAAGTAC--------TATGA-------------ATTGGGGAAACATTT--------------------------------------------------------TTGACAAC----ATCAT--------------------------------------------------------------------------------------------------------------TTTGCAGACAATGAAACCTAAGCTTCATAGCAAAGCAATGACCC--------TTTATTTTTGGCCCTATTCGTAAATTTTCAGCAATACGTTGTTTTCTGGCCCAGCTATGTCACTGGCTATCTACAAACACTTCCTATTTTTCTTAGATAGTTTCCTGTCACTGGAAAACC--ATTACTGCTTTCTATACATTGACTTAAACTAACCTTTGGCCGTAGTGCAGTTCC--TCTCCTTTGAATGCTCCAGAAGATTGTATCAACTTTGCTATTTTTAGGTGCCCAGAAATCTGCTTATTCCTCTCTTATAAATCTAATCACCATCTAATAAGATTTAAAATTGGTCATATAAATGCTTGTTAATTACAGTAAGCAA----AGGgctcttt----gtaaatattttgtctattttgtgattgttt-cataTA------ATATGTCTGGTACActtttatcattaaatatttttaatttttttccaaattaccATTGCTGTTGTTCCCATTATGTTATGAAAAGTAACACTTTTTTAATGTTAGAAATAGCACTTTctaatatttctgtgttttgaatGGGAGATACCAACTTAAATATAGTATTAAGAGAAAATACATAAGCCTCCTTATACAGCA-----------TACATTTTCCATCATATTTTCTATTAGGATAATTTATC---CCTTCAAAAagagcacaaagaaaaaaaaatatgtatat-------------ctcAAAAATGTTGTTAC-------------------------------------------------------TTCAGAAGTCTAATGAGAAAAGATAGAGACAGATGAAGTTCTGGTGCCTAATTTTCTGCCCAGCTGCctagatgaaaaataaagatgtagTGA-CCTATGCTTCTGTATGCTAAACTGTTCAAATATTCAG-CTTCTTTAGCTAAGCATTATGCCAAGGCTGAGTGCCCAGTATCTAGATTAGCAGACACTATTCACCTGCTAGTCCCTTTTATTCCCCATTTTTAGCATGAAAGAAGAGATAtctaaaaatagaacaaatccTTGCACCTGGCTTGCATTCCTGAATATACAATTAGGCCACAGTGAAGTGACAAAATCATATCACACGTTTTTTATTTAGCTCAAAA-ATAATacatgtagttttaaaattacatgcaCTTCTCGTCCCTTCTT----TTCTTAGTtggcaatattttaaaacttttagctGC----AGACAAGTGCACATTTACCC--TAAGAACCAGGCAGTCTCAAGATTTTTCTTATGTTGAAGTGAAATTGAAAATCA--CTCATTTCCATGAGTAattgaaaaaatcaaatgaatccCCTGGACTCTATGTTTCAACattgtgtgcgtgcatgtgtgtggt

a score=58005
s chr3           151181543 1460 + 160039680 TTTAACTGGGATTTATTTTAACTGAGCAAATTCTAGATTAAAGCTTACCTTCTGAAGAAAAAGAAAATAATCAAAGATGCTCCATGAAGCACACTGGGCTTTTTTTTACTTCTGGAGAAT-CTGCTCCTCG-AGTTGATAACAGGGAGGGAAGAATTTCTAGTTCTAAGAAGACAACAGATGTGCCTTTCAAGGTTGATGCTTTCCTAAACTC---AAATAAAGTCTAGAAATTCATATGTGTCTCATTAAGTGCAAATCTGCTACTGTTAAACACACACACTCATAGCAGTCACCTTGAAATTCAAGCAG-GCTCTGAATTAAGCTAGTTAGCAAGGATTGAATTGGAGCACCTTGGATTTTATTTTGATTTAAAGAATACAAAAAAAAAGTTGTAATGTATCAGCCTTGTATTTAATGGGTTTATTCAAATGCCCTTGCTGGATGATGTCTGTTATTTGATCCATTTACTTTGCAAATTTCATTGCAT--GGAAATGGATGTGTAGTTTTCTGAGTTCATGGTAGTTTCATTTTT------CTTGTATTTCTT-------AATTACCTTGTTTGTTTTATGCCACTAACAGGAAGCTGTATCATTCCTATTAGTGTTCACAGGTTGAGGCACACATGTGTCACAAATCCTGACAGTCAATAATTAAAGTATTTAAATGAAGTTGTGCCTGTACTACAGTTCCCTGGTTGAACAAATTTGTAGAGCAAGATTTTATTCTGATCTATAATTATAGCTGCCAGTGACTGGCATGATCCTTACTGAGTCAGATTAATTTACACATTAAGCAGCCATCTGCAGAAATGTTCATAG-ACCTCATCTGCTCTGCTGTGTATCACATGGGAATTCTGAAACTTCTTGGCCACTGGGGAGCTCTCCCTACCATGGTTGCAGGCTTCCAGTTAGGAACGAATTATCCCCAACATTAACATCCTTTTCTTCCTTACTACAAGGTTGCCTAACGACCCAAGAAAAGCTATATAATACTTGGGACCACTAATGGCAGTGCAACTGATAAGCTGAGGGCATCTGCTTCCCTTTCTTTAAATAAATGCCTTTGGCTTTATGTTGAACAACTAACAGGTCTCATGGAGCAGAACAGA--TATCATCATTTCTTTGAAAAAAAAAAGTAAATATCCCCTACATTTGGGCCACAAATAGCTGCAAAGAACACTGTAAATCTATCAGGATG-TTTCTTCAAGAGAAACAAAAGCATACTCACATCATTATATCTTGCTGTTGTACAGCAGGCAAAATTATTTCCCCATACACAACAGAGGTATGTAAGAGAAAGAGAAGAGAGGAAGTTACTTTAGACTCCAGAGTTAATTAACACAGTGATGTTTAAATTATTAAAAGCAATATTCATGTAAAAGGGCTTTAAGTTTATCAGT-----------------------TATTACATTTGTAGCATGTTGAGCAATTAAAAG-TATCTAGATCAAATCATTCAGACCAATTTGGTTAA
s HiC_scaffold_1 137785182 1432 + 233722169 TTTAATTAAGGTTTATTTTAATTGAGCAAAGACAAGATTAAACCTTGCCTtt--gagagggggaaaa------aagatacTCTTCCAATTGTGGCAAGTTTTTC-------CTAGAGAATTCTGTTCCTTGCAGTTAATAGGAGGAAGGGAGGT-TTTCTTATTCTAGGAA-----CAGATGTGCCTTTCAAGGTTGGTGCTTTTCTAAACTCTccaaataaaagatgaaaactcATATGAAtctcattaaatataaatatgcttGCCTTAAAC--------TTTTAGCTGTTACCTTGAAGTTGAAGTAGAGTTCTGAATTCAACTAGTTAACAAGAGCCTAATTAGGATAACttacaattta-----attttaagattATAAA--------------GTATCACGTCCATATTTAATTTGATACTTCA--CGTCCATAATGACTGATGCCAATTATTGAATCCATTTGTTTTGAAAATC-CATTGTGTTTGGATATGGATGCCTGGTTTTGTTTCTTGGtggtagtttgtttttttttttccttgtttttttttttctttaattatcttGTTT----TATGCTACTAACATGAGGCTGTATCCTTCTTATTAGCATTTGCAATTTGAAGCACACACGTGTCACAAATCCTGACAGTAaataattaaagtatttaaataaacttgTGTATGTGATACAGTTCTTTGGTTGAACAAATTTGTAGTGCAAAATTTTATTCTGATCTATAATTATAGCTGCCAGTGACTGGCATGATCTTTACTGAGTCAGATTAATTTACACATTAAGCAGCCATCTGTAGAAATTTTCATAGTACCCCTTCTGCAGTGCTATACATCACATGGGAATTTTGAAACTACCTTGCCACTAGGGAGCTTTTAACACCATGGTTGTAGGCTTATAGCTATGAACAAATTGTTCCAGACATATACATTTTCCCCCTACTTATTGCAAAGTTGCTTAATGATCCAAGAAAAAGGGTACAATATTTGGGACCACTAATGACAGAACAATTGATAAGCTGAgaacttccattttattttctttaa--aagtgccCTTGGTCTAATGTTGAACAACTAACAAGTCCTATGGAGCAGAACAGAGTTACTATCActtctttgaaaagaa----taaatgtcCTTAATATTTGGGCC----AGAGTTTCAAGCTATATTGTAAATCTATAAATATGCTTTCTTAAACAGAGCCAAAATGATAGCATTATTGCTGTGTTAGGCTGACTTTAGAGAAGCAAAACTACTATATCTTCAGTATCAAGGATATTCCAGAAATATGCAAGGG--------ATTTTAGAATCCGGA--TAACGTTTATAATGTAGTTTAAATTAATAAA--CAGCTTTGATGCAAAATTATTTGGAATTTAGAAGTGAATGTTGTTTCAATTTCAGCAATAGTTCATTTGCAGGACATTAAACATTGGAGGGAAAACTAGCTAAAATTATTCAGAGCCACTCAAATAA

a score=36419
s chr3           151202188 1454 + 160039680 AGTTGCTTTAGGTACATTCTTCACACATATTTTCTCCTCTGCCATCACAATCTGGAAATGTTACCTCAAGATGACTTTATAAGACTCCTCTGAGCATTTTAATTGAGAGAAGAAATCAAAGTCTGTGAGAATGA-CTGAGGATAGCCAATCTGTTTACTACAGAAC-AGTAATATTCAACCATTAACACACATTCTCACTTGAAAGAGTAAAAATATGAGCCACAGGCCACAACCACTG----GTCTG-CATGCTGTCTTATA----TGTCTTAATTTTCTTCCATTT-----------AGTATAATGTAAAACTGTAAAGTGACTACCTTGGTGAACATAGGGGGAATGTTTTATAAACTTTGAAATTTATATTATATCAACATGTGTGCTAATTTGTAAAAATAATCAGCTATATTGCAAAAGGAAAAAATTATCATGATGGTCTATTTCCAAA-TTTATTACTGAAATTACTGTTAATAATAGCATGACAAGATAATTAACACCTGCAGAACATTTCTC--ATtgaaagagtacttagaaatattaattgtataacctctgcgacgccccactttacagctagataaa-ccaaagcagaggttaagtgatttctcaaaagGAAAAATATTCTGCCCAAAATTTGACAACATGCCCTCAATATCTTTGCCTTAACCTTAGACCAAGGAAAGATCACTCTTCTCCCTACATCTCTGGGACCAAGAAGGCTGATCGTGACATTAATATAATACTCAACTATCAGTCATGATTACAGTCAACAGTCTACCTGCTGAATCATGTTCAG----------------------AAGTCCTAGTGGAAAATCAGTGAGCTAGATAATTAATTAAAACCTGAGA-------ATTTTTTCCTAATTTGTAGGCACAAAAGAAATTATGAATGTGTTTGTTGTTGCCAGCTGCTATTGCCCTTCCAAATCAG------------------------------------------------------------------------------------------------------------------------------------------GGAAAAGAGGTCAATGGTAAAGTTGGGAAGGGAGAGGGAAAGTATAGATGAGAACACTGTAGGATTCACAGGCCTT-CAG---TTGTTACAAGCCAGCCCTTAGGCGGAGCTGGT----CATCTCAGATGATGTCACTCAGAAGAGGGCAGCATT----------TTTGCAATTCACATTACTATATTTTCCCTTTGGTACTAT--------AAAACAAGTATTTTCCAG--AGTTGAAAATAGACAATTTTTATTGATATCTTGTTGGGACGCCATGATTGAGTCCCAGATCCTGGAAACAAGTTTATGAAATGAGTTATATTTGTCA----------AGGCATCGGTGGCAATGCGATTATTTTTGTCATGCTGTGAACATGTAACATGCAAAAACAAATTGCAAACTTTTGTATTTAATTAAATTTTCTTCCCCAAA--GCTACCACATTCTTGATACGATTTTAGCAGTGAATATCAGTGTAGAATATACAG----AAAAACACTCACACCACATGAATTAGA----AGTCTCA---ATGACAAGATATAGAATAAAGCGGGGTTCACATAAAGTAGAGAAGATAATGAAGTA
s HiC_scaffold_1 137806435 1623 + 233722169 AGTGGCCTGTGCTACTAACTTCCTGTATGCTGTCTTCAttactagagaaaaccagtaAAGCTTCTTGAAACTCTCTTCCTGTTAGTCCTATGGGGGAAAGAATTGACAGGAGCAAGACAAGTTTGTCAAAATAAACTGGGGATTGTTGACCTATTTCTT---GAACTAATACCCTTCAGCCATT----CTCTCCCTCAGTTGGCACAGCAAAAACATTAGC-ACAAACAATA--CACTGTCATATCTGTCATGATATTACATGGCTTTATGTTATTTTTACTCTATTTCATCTTTCTTCAGCATGATATAAAA-TGTGATATGACTATCCTAGAGATTATAGAG---ATGTTTTATAAACTTTGAAATCTACACTATGCTAACATGCAGACTGCTGTGGCAAAACTATCAGCTAGTCTGT----GGGAAAAAATGTCATGATGGTCTTTTTCTAAAATCTATTACCTAAATTACTATTAATAATAGCATGACAAGATAATTAACACCTGCacagcattttttttattttaaaagtactttaaaatattaattgcaTAACCTCTTCAACACCTCATTTTATAGCTAGAAAAAGCCAAAGCAGAGGTTAAGTGAtttctcaaaagtaaaaacatCCTGCATAAAATTTAGCAACATGACCCTGCTACCCATGCCTTAACCTTAGACCAGTGAGTGATCgctcttctctctttttatgtAGGATCAAGAAAACGGAACATGGCATTAATATAATACTCTTCTACCAGTCATGATAATAGTCAACAATCCACCTACTGAATTATACTCAGATAATGCTTCCTGCAAAGGAATAAAGCCTAATGAAAAATCAGCCAGCAATAAAACTAACTAAAATCCAAGACTTCTCCATCTTCTTCCAATTTGTAAGTACAAAAGAAACTCTGAATATAGTT-CTGGTGGCAGATACTATTGTCCTCTAAACTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG----GGGGTTTAT--TAA-----------------------GTAGGTGAGGACAATACAGAATCTTCAAGCCTCACAGATATGATTATAGCCCAGTTGATATGCTAAACTGGCATAATTTCTCAGTTGATGTAATTCTATAGAGGGT--TATTGAGTAAACAATCTgcaattcat-ttatta-attttgcttGTTTTACTGTTACCTAGACAAATAATTCTATTCCATACATTTGGCAGTACACCAATTTGGCTAATATTTAGTT-TTATGCAAAATTTGAGCTCTTAGCCTTGGGAGCAAGCCTGTACAATTAGTTCTATTTAACAAAAATAGCACAAGTCTATGTTGTTATGATGTGATTCTTGTGATATTGTATTCATGAAACATGCAA-----------AAGCTTttacatttcattaaatattttttttcaaaaggcaACCAAGTTCCTGATAAGACCTCATCAGGAAATTTT----TTGAATATGTAGTaaaagaaatgcatttatttattcaatcagAGAATAGTTTCAGCGGTGAGGAGAAGTGATAT-------GGTTCGAGTAAAGTGGGGCAGATAATAGAACA

a score=29959
s chr3           151210609 866 + 160039680 TTTAGTTTTCTTTCATGTTAGTTAGGTTTTATTGTGTTTCTCCCTCAGGTTTTAA-----AAAGAAAATTCTAAGA------GACTTTTCATAATTCTTAGCAAAGTATGATCAACAAAGATTTACAGGG--TTATACACTTTCGTTCTTTTCCTGCAGTAAGACACATTGCTCTTGAAAGTTTTTGGCATTTCAACAACATTTAAGATGAAGAGGAAAATCATAGAAAATGTAAAATAATTCTGTAGCCACTTATTTAAAGTTCAAGACATCATATTAATGATGTTTCCCATGTGTGCAGTGATAAACATGTGAGAGCTAGCAAGAAATCAATGTTACCTCTTGACTGGTGCTCAGAGCTTCAG-GGACCCCCCCTTCCATGGTTGAAGATTTAATAACATCAATAAGTGCTTTTC--CCATCTGAATATGTTCTTTTTTTAATGATCTGAATCTAACTATTTTCATGCTTTTTAGGAAAATTTCTCACTCCGTTTGGATTGTGAAC-CTAAATGGGAAGGTGTTAATGAGGCCATAGTTATAAATGTCACTTCCATCTGGGATGGGACAGTAGTTCACAGCTTTATGAAGTCATAAAAAAATAACTGTCTCAGAATTACATCTAAGACTGGATCGGAGTAAATTTAATCTCTCTACTAGAAGAAAGTATATAGCACTCTTTCTTTAAGCCACTTCATACTGT-CCAATCTCCACTATATGGAGATATGCATAGcacacagagacatgcgcgcacacacac-----acacacacacacacacacacaAGTTGCATAATC-----AGAAAATAATGAGTATGATATGATTCATGGTGGTTTTATTTTAAGCACAGTCTTTTAACCTAGATATAGTGAAATT-GAATCCTTGTTCA
s HiC_scaffold_1 137814856 853 + 233722169 ttcatttttattttgttttgttttg--tttattggagGTTTTTTTGCTGTCCTAGTGGCCAAAGGCAATTCTTGGAAAGCTAGACTTTGCAGATTTCTTAATAAACTATAATCAACAAATAGCACCATGgcattatgta-tttatttccttttctgaagcAAGAGATA--GATCTTAAAA-TTTCGGGGATTTCAACA-TATTCAAGATGGAGAGGAGAAGCctggaaaatgtaaaacaatcCTGCTGT-ACTTATT-AAAGTTCATGTAGTCATATTGATGATATTTACCATGTCTGCAGTAGTAAACCTGTGAGAGCTGGCAGGAAATCAATGTTACCTCTTGTCTGCTTCGCAGCACTACAGAGAATCTCACCCTTGATGGTTGAAGATTTAATAACGTCAATAAGTGCTTTTCCACTCTCtgaatatgtttcttttt--atgattCGAATCGAACTACTTT--TGCTTTTTAGGAATATTTCTCACCCTTCTTGGATTGTGAACTCCATTTGGAAAGCTGCTAATGAGGCCATGGTTATAAATGTCATTCCCATCTGGGATGGGACAGTCTTTCACAGACTcattaaatcataaaaaaaaaaaaa----aaacttacttttaAGAATGAATCAGAGCAAATTTATTTCCTCTCCTGGAATGAAAGATGCACCATTCTTTC-TCATGCCTCAACACAAAATGCAAATCCCCACTC------------CATCTCACCCCAGCACCACCGCATGTAGACTCAGAAGAAACACACATACTCACTAGCTAGCTATGTGATCATCTtagcaaatga--aaaacaatataatgC----------CAGTTAAAGCATAAACTTTGAAGCTGAATGGTATGAAATTCGACTTTTTGTTCA

a score=64780
s chr3           151214994 3668 + 160039680 TAACTTGTATTTGTTGAACTATTCATGGTAGTAGGTTTCTTTGTTGTTTCAATAGCTTTA-TTCTTGATATGGCCAATATTATTTTCTA--TTTGCTTCAAGGTCTGATTAAAATTTGTTTTGTTCCTG-----------TGTAACTTTAAAGattaatatattttcttatttttaaataaaatCAAGTATAacctaaataccaaggatataaa---ttttatcaaattcttattgataggaaaccttcaattaaaagagtgcttcagtatggtttattctataggttaataaggttaatcaaaaaatagggaaaaggattgggccaaatccattt-ataattacaaactcattttattaaatggcaaccAATTAACAGGTAGAAGGATAGGGAATAAGGAGCGGGCATTCCTAGAGTTCTCTTATTAACAAATCAGCTTTATTTAATGAGAAGGAATCATCATCCATCTTTTT------------------CCAAAAAGTGACTATTTCCATAATAAACCTTTTAAGTTCTCCAGTATTAACATTGGTATATGAAGAATCATTCTGGTTTCCTGGGACCTATAAAAAAAAAAATTACAAGTTTAAAAAGTACTGCTGTGCTCTGGCCGGAGA-TTCTTCCCACTTAATACACTACCCCAAAGTAAAGGCAGGAAGTCTTCCTTAGCTGACAGGGATTGATTAAACA--------------CGATAAAATTTGCTCAGAAATTGAGCAGTATTAGAAGGGTAAGAAAATAGTGTTCCAGCTACAAAATCAGAGGAAGTAACAG----TTTTTTGACAC---AGCAGCCTAA-AAGACTTAATTTGGAAGATTATTATTAACTTTCAATGGAAAATTTTGAGACCGCCAAAGACAAAC---AAGTGTATATTTTAGCATGGTGCTGTATGACATGAGTACATGAGAGAAAAATT-TTAAATCTCAGTTATTATTAATAACCAAGGCAAATATTATTTTCCCT---GTGTGACATTTGA-CCTATTACATAGAGCTCGGATTTATTTTCTTCTC-CATATAAAAActctg---------aaacatttggtcagtcagtttaagctaac--acagcatcgtgagaatgttcactg-cgaaatgctgcagaatgcacgtggagcagcaggctccagctcttcccagactatttgctctaattaattcttcatgtctacttcccttggaaaattcaaagtAGAGCTGTATAAATCCAAAATAGCTAAAGATTCGAACTGTAGTTC----------ACTTGGACGGCTCTCCCCAAACATCTGA-----GTCTCTGTAGCTGCTAGGGGTGAATAAAC-------------------------TAtcttgtgaggttctttttcctgcttcagagatga--gactttt--catgtcttcacaggg--aaaggggcagaag-ttctaca---tttgttttataaagctagcta-ccatttatgagggtagagtcttcacgtaaat--tcacctGGAA----------------AACACTAGCAACCCACAACCTAGCTTTCAACATGCAGTTTTGAGAAAGGCAGACACTCAGGCCATCGAAGGTCAGGACTACCTTCCAACAAGGAAGCCATGCTTGATCCTCAAACGGAGGTTGCATTGTGTTTTCCTTCTCAAATCTACCTTCTAGATGCTGCCTTATATTAATCTTGAGTTCAGACTTTTTGCCTTCTTGCCATGATATTAT--CAGAGAGCTTTCAAGTTACATAT-----------CTAATTCTCTACTC---CCATCTTCCTAAGTTAACGATGACAGTGAGGATTCCCAGAGGCTTCACTGATCTCCCATTAGACTATCTATCTCGCAGATTTGCATCCCTGTCCTTGACAAGGGCTGTTGTATCAGGACCACACAAGGTTAGACAAGCATCATTGTTGgctgtgctgtgctgtgctgtTGTCTTCCTGGGAGTGCCA---GCTTCTGAAGCCACCAGGAAGCGAGcagg----aattgccttgaggccaaaatgttgatctcagcataggaccttgaatatgtatgccttttcactttctgtattacaatgttagagccagaagcacagtgagaaaaaaaacgagtgtctggactgatcatatgcctattataaacagtatggcttttttgcagg---atgctgcagtctctcttttaattatctta--ttaaaattactggattccacttctagattctttgga-acaagtcc-cctgtcagtcaaaagga-aggaacccatcctct----taggatggacatagttttacatcttgtgctagacaaaacttcaaaaagccatgaacactttcggctaattcctgtcagacccaacagcttaaaatcaattctactgaatttaatattgttgtctttggcagaagttttcaggtgttaaaatgaacagcactaagtaactccttccagcatgccaattcattttattacttaggagc---tttgttagccagcttattctggGGCTGGCACTCCtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgATCAGATTGTCTTTCCATTCAAATTTTAACACAGTGCTAAGATTT------GAGAAAAGGTATTATGCTCTCAAAAGGTTTTAGGCCCATATATGTTTTTCTGCACCCAGTGCTTTGTGTTCCTTAAATTG--------------ATAATCAGGCTGATGAATTAATGTTTTAGTTCATGAA-ATCATTTCATATTTGTATGTAGGTGAGCACAACAGACTTCTAGGTGATCTAGGAGTAGGTTGGTGT-GTGGTGTGATATTTTAATGTCTTAAGGAGATGGGTCATTCAGTAAACAATAACACAAAGTATTTCTCA-TTACATACTGACGGTAGAAATCTGTTATGGATCCTCTAAA---GGTTACAAGAGAGAGACATCCTTGAAGCAGAGTGCTACTGGCCTGC-----------ACAGCT---CTGCACTTTGACTTAGTATTTTCTCAAGATGTTCCTcaaaagtcaaaatattagacacacaaatggacacacataaacacacacatatacatgttggcatacatacacactcatgtgtaccattgtgcatgcatacatgagcctaaatttatgtgcacacattcaaacaAGCAAAtgtgtgtgtgtgtgtgtgtgtgtgCACATCATTGTCTCTAAAACAAACCATTGTTTAAAATATTCAATATTATGTTATTCAATGGTACTTTTATGTAAAATCCCAT------TTTTCTTCTATGAGT---TTAATAGAGGAAAT-----AAAGAGCACAAAAATATAATGATTTTTTTAATTGATAGAAGACAGGAAAGAAACAAAAATTCCCTCTTATGAAGAATGTGCCCATATGTCTCAGCTGACCTTAAATCATGACACTCGGCAGTGCTTCATCAGATCACTCTAAATTCACCAATATCCTTCTTC------TTTAAAGTTCTGTACTATTTACTCTCAGCAACTT---ATAATGGGCTTAACTCAGTTCATCCATTTTCCCACACTATTGCTAGAGTAATTATAACAA-GAATGTCACTAGGCTTAACTGATTACTACAGATGATTCTGATGAACTGCAATCTTTTCTTTGCCTGCTTTCTGCTCTTGCCACTTGCAGCAGTCTACAGGATGCTGCTTTGATGTGGACTCTCCATCTTGTTCAGCATTACATCTCCAG-ACAAAGTTGGTCTATAAGAGTCATTCACTGTCGATGGCAT-GATATAATACGCCT-----------ATCCATATACCTTCGATCAGTAGCTATTAATCCTTAAAAGACATAA-----TAACTTTTATTGTAAAAACTAAAACTACGGAATACCAAC
s HiC_scaffold_1 137818600 3529 + 233722169 tgattttaatttgttGAACATTGCATTA----AGGCTCACTAATAATTTTGATAGCCTAAATGCTTGGTATTATCAATATCATGTTTTGATTctacttcaaattct----------tttttgagTACTGCAAATCTAAATTATAATCTGATAGTTTAACTTATTACCTTTTCTTCAGATATA------TGTTACCTAAATACGA--GTTGTCAACCATTCTGATgaatttttattgaaagaaaacttGCAGTAAAAGTATTACTTAAATATGAATTATTCCATAGGTTAATAAGgttaatcaaagaagaaataaaaa---ctagccAAATCCTTTTTATAATTACAAGCTCATTTTATTAAATG-CAGCCAATTAACAG-TAGAAGCATAGGGAATAAGGAGTGGGCATTTACATTGTTTGGTTATTAAGGAACCAGCTTTATTTAATGACTAGTAATCACCATCTGTCTTCTTATCTCCATTTTAGGCATGATAAAAAGTGACTATTCCCGT-GTAAAACCTTTACGATCTTC------AACAATGTTATACCAAACA-----AAGGTCTCCAAGATTCTGTAAACAAAAGTGT--AGGGTTAAAAAAGTATTTCTGTAC-CTGGCCAGAAAGCTCTCTCCATTTCAT------CTCAGCAGTAG--------------TCTCGGCTGAGAGAAGTGGATTGATCAGCCTGTTTGAGGTTCAATAAAATTTGCTCAGAAGTTAAACACT-TTATAAaggtaatgaaataaaatttcaattac-aATTCAGAGGAAGTAACAGGGAtggttttaaaattcaaactgcctaataaaatatactttttaagatTATTAT---ATTTCAATGGAAAGTTTTGAGACTACC-AAGGCAGACAGTAAGTATATATTTTGGCATGACAATTCACAACACGA-TAC-TAAGAGGGAAATTAGAAAAGCTCAACTATTATTAATACCAACTATGAAAATCATTTTGTCTTCCATGTAACATTTACTCTTATTTTATGGAACccagctttattttcttcttaaatatcaGAACCCTGTCTGCTGTAAAATGTTTGGTCAGTCAGTTTAAGCTTATGGACCCCATCATGACAATGTTAACTGCCAAAATGCTCCAGATTGGCTCTCCAAGAGAAGGTTCCAATTCTTCCCAGACTATTTGCTCTAATGAATTCTTTATGTCTACTTCTCTCAGAA-----AAACTGTGATTATATTAGTCC-------------ATTTGGGTTGTAATGCCATAATATCTACTCTGA--ACTgtttttaaatgacagaaattcATTTCTGTCATTCTTAAAGGTGGGAAGTCCAAGATGGAAGTATCATGGATTTGGTGTCTGACAAAGGACCCCTCTCTGCTTCAGAGATGGCCGTCTCCTGCCATGTGCTCGAATGGCAGAAAGTGCAGAAGACTCCATAAAGCCTCTCTCTTCAGGGCACCAAGCCAGTCATGACAGTAGAATCCTCATGATCGTGGTCACCTCCAAAAGAGCCCCCTCGCTTAATACTACCATAATAAGAATTGGATTTCTACATGAATTCTC--------TTTACATTCAGACCA---AAG--CAGTAAT------CCATGTGAGAATCTTGCTTTGCCCTCAAATATAgacta-atttttcatattttctcaaa------------ATGCTACCTTA-ACTGGCTGTGTCTTCCCA-GTCTTATATCATTGCCACTACGCCATAGAAAAAAGATTTCATACCACGCATTAttctttatgctttttttctccCCAAACCCTGCTCCTCCATTAAGAGCAATA--CAAGATTCTTTAGCACCTCCAGAATCACACTTGAGCCT-TTGACTTCACAGATGCTCATCAAAGTCAGGGACAGTTGATGTTGGATTAAGATCATAGGAGCCTGGAATAATAGCATCAGCACC-------TGCAATGTTGTCATCTTCCT--TAGTGTCATTTTCCTCTGAAACAGGCGGAAGGCAAGCAGGAACTAACTGCCTTTAGGCCAAAATGTTGAGCTCTGCATAGAACCTTGAAAATTTATGCTTCCTTGATTTCAAGAGTACAGCCTTATTGCCAGAAGCAGaatgagaagaaa---gaatttttggactgatcttattttaattttaagcagttt---ttttttaaaagactatgttGTGGTCTCTCTTTTGTTTAACTTATGTTTAAAGATCTTGGTTTTGTTTCTAGATGAGTTGGATCCAAGCCCACCTGCTAgctaaagggagaaaaaagaatattctgCTGTAGGGCTAACATGGCTTTATATCGTGTGCTAGGAGCAACTTCAAGAAGCAATAAACTCTTTGGGCTAATTACTGTCGGAGAGAACAGCTTAACATCAACTCCACTGAATTTAAAACTGTTGTCTTTGGCAAGCATTGTCAGGTGTTAAAATGAACCGTACTAAGT-ACTCCATCCAGCAAG-TAATTCATCCTATTACTTAGGAGTATGCTTTATAGCCAGTTCATTCTGGTG--GGC-----------------------------------------------------------CAATCAGCTTGTAGTGCCACTCAAAATCAAGAACAATTCTGAGATTTCTCTTCTGGAAAAGA---CatgttctcaaaatattttaggtCACAGTAAGTTATCCTGTACCCAGGATTCTGTGCTCAATAAATTGTCTCAGTTGACTCTATTGT-AGGGAAAACATTTTGGATTTCAATACAAGAATAACCTTTCATAAATGCATATG------------AAGATTCTTGGTA--CAGGGAATA--TCAGTATCACCGTCTGATGTGTTAATTTCTCAGAGAGCTA---CATTCTGTAAAGAATAACACAAGATGTCTGATATTTGGTTACTCTGCATAAAATTCAGTCTTGGTTTCTCTAAATATGGTTACTAGAGGGCACCATTTCTGAAATG------TATTAGTTTGTCTTCCCTAATGATACCTTTACTGTGTCATGgtttagtgttttt------tgttttgt--------------------------------------------------tttgttttg--------------ttttgttttgttttgtgtagtcA-ACATAAA---GAGTACACAAACACATATTCTCA--------------------------------CACACTACTGACTTTTAACCAAGCCATTATTTAAGATATTGCCTATTATATAGGTAAATGCCATTT---TATGAGATTTTATAGGTTAATTCCTTCTACAagttaattactttaaaaaatcctCAACAGCGGATGGAGAGAAaatggttttt---att--------------------------ctctttcttgctGGAAATCTACCCTTAGTTCAAAAGGGAGCTTAAATACTGA-GTTCTAGAGACCTTTATTGACTTACTCTAATATTAGTAATATTAGCGTTTTGAAGATTTGAAGTTCTATAACATTTATTATCTACAATTTGTGATAGTGTGCTTAACTAAGTTAATGAGCTTTCCACAATAACCTCTAATACAAGTACATTAATGAAGCACAGAAAGCTTGACTGATTATTATATCTAGTTCTTCTAAACTGCAATCACT--------------------------CCTGCAGGTCTTTGCAAGTCTCTTTCATAATATTGG--TCTAATCTTG-------CTGTATCCTCAGTATATAGTTAGCCTGGAAGAAGCATTCTTTAAGGGTCTCCTGGATAAAATAAACCTTTAGAGGCTTCAACCATACCCCTTGGATCAATGCTTTGTAATCCTTATGtagcataaataataaatttatagcctaaaaactgaaaatttaggATAGCAAC

a score=114025
s chr3           151218697 5960 + 160039680 [encoded data, 6759 characters]
s HiC_scaffold_1 137822788 6332 + 233722169 [encoded data, 6759 characters]

a score=113556
s chr3           151225777 7230 + 160039680 [encoded data, 7932 characters]
s HiC_scaffold_1 137829254 7114 + 233722169 [encoded data, 7932 characters]

a score=96367
s chr3           151257066 5740 + 160039680 [encoded data, 6507 characters]
s HiC_scaffold_1 137842925 5903 + 233722169 [encoded data, 6507 characters]

a score=35247
s chr3           151272689 1882 + 160039680 TTTCCTCAGGTACCAATTAGTGTTGGTTCTTCCATTTATAACACTCTAACCCTACACTTTTGGATTACAAATGACAGCCACTTCAGACATCTTGAAACCTGGCTGTAACTCTGCTCGCATTGCACCTCATGACCTCTGCTCAACCAGCAAATTGAAGTTTTATGTCCCCAGAGTTAAGTCGGAATAAACTGGAAAATAGAGTTTTCTAGGCTATTAGCGCTAACCTATCTAATC-TTTTGCACAGGGGATTCACCTGAGTTCTGTTATCTCATCCAGGAGCAGGTGTAAATCTTACCTGTTTGCTTGTCTTCTAACAATTCCCACTGGGATCATTGGCATCCACTAACAAAAACCACTGAATAAACAACTCTCCCAG-----------TTCTACAATAAT---AAATCATGCCTTTTG-AATTTACAATTTAACTT--------TTCTCAAGACACA------ATGGTAATTGATTGGAAAAGTTGGCTAATCTTTTATCTAATGCATATAATATGCGTATACGATAAATCAAATTAATTTCGTATTGTTCTTCACCTTGCTTATACACCATTGGAAAGAGGTGTAGTGGTAAGATAGACCTGTTAGGTAAGAAAAAAAATTGAAGA------TAGATTTAGACAACT------------AATAT------------------------AGTTG--------ACATATAA--------------------------------------------------------TAGTATTAATAGAAAAT-----CATTATTAGTGTACCCAAATGAAC----TCAATATATTTAAAACAA----CCAGTCAATCAGACCTCATTCCTGCCGAGCAGCGTATGATGAGGCTGTTTGCGGGGAAAGCACTGCATTTGTGGCTTGGTTTGCTTTTCTTACTATCACTAACCAGCATAGACAAAGCAT-----------TGCTGCATCTCT-----CAGAGCGGTAATATGAACAAGACACTTTGAGGACATTATCAAAGGGAAGTTAGCAGCAACCAGAGAAGTAAAGAGTGGAGGTGGGGCaggcagggagggaaggagggagggagggagagaggAAAGAATTCTTT----TCTAGGCACATACAAGTTACTTCCTAAGCACAGAACATGTTTCCCATATTTTAAGTTAGCAGGTCAATCAGCGAAACACTGAGCCAGAAAAAAGAAACGCATCCTCTACCTATTAGAGCATAAAGCAAACATTGTAAGATCCACTAAACG---------TCCTTACACTAAATCTAG-----TTGCTATTGTTC--------ATTGATGTTACTATTCTGACACTTAACATGGGGCTGATATTTCTGTTCAAAAAGTAGCAGCC-TGGTAATCTGGTAGattttatatat-----------------attatatattttatatatCTCTC-----TCCACACCTAG-CCCAGGGTGCCTA-----TTCAGTGTGCTGAGTTAGTAGT-----GGATGACTGATAAATTCGACC---------------CTGAGATTTGATAAAATTCCCTATTTGATTCCCTATTTGCATGTTTGTCTTTTGTCCAAACTTCAGGAAGTAACTCAAGTTCACCTCAAAGTTACCTCCTCCACAGAAAGTGTTTCTC-ATTTCCACAAAGCAACGAT--------AACATACCAAAATG-----------CCTCTAAACACTAATCTCTTA---------ACCAAGAAAAT-----GCATTTTTGAATTCAAAACTCTAGATCTATTTTTTTCTGAGTATTGTA--TTTTGATTATTTTGAAATTGGACTTTAAATCA-TTTTAATGTAAAAAATTATTTTAATGAGAGCTAGCAAATCAATCAAG------GGTAAGGACAAATTGTTCTTTGTATTTAGTTGAAGACAGTATTTTCCTGttattttattataatttaaaattttCAAACATTGTAATTTCATCACTGTAAGATAGATG------TTTTTATACCTTCAATTTTCACTTACAGTTGTTTAATGAACAAAACGCTCATTTAAAGTCAAATTTATTATCTAATAGAGGAATGTAATTAACAGTCAT--GAACAAAAGCTTATATGCCTGTCAAT------------CTAGAGTAAACTGTAGAAAGAATTTCa
s HiC_scaffold_1 137861356 2103 + 233722169 TTTGTTCAGGTACCAATTTGAGAGGTTACTTTAAATTATTCCTCTTTAACCCCAAGCTTTCGGATTATAAATAATATCCACTCTGGACACCTTGAAATCTCACTGTAACGCTGCTTGCATGTCACCCCATGACCTTTGCTTCACCAGCAAATTGAAGTTTTATGTCCCTAGAGTTAAGTTGGAATAAACTGGAAAATAGAGTTTTCTACATCATTAGTTCTAACTTATCTAATCTTTTTGCTCAAGGGATTGACCTCAGTTCAATTATCACATACACCAGAAGATGTAAGTCTTACCTATTTGTTCATCATCTAACAATTTCCAGGGAAGTCATTGATACCCACCAGTCAGAGCTACTGATGACTAAACTTTACCAGAACccaaaagattataaaataatataaaattgtgCTTTTTGTTGTTTGGGATTTATCTTCTCTAGTCTTCTCAAATGATATTTAGCCTGGTAATTGATTGAAAAAGTAGGTTGACACTTTTTCTAAAGAAtgtaatttaattattatatatctcaaattatttt----------ttcagtgtatctaTACCAAACTGCAAGCAGGTATGAGGAT---ATGCATCTGTTCAGCAAT-GGAGAGACTGAAGACCTTTCTATATTT-GACAATTTTACGTGTTTTCAGTATATAATGGCTGCAaccatcatggggagttggtagaCGTACATAGAACATCTTGATTTTTATAATCCTTTGCCTTTCCTGTTCCTTCTATCTCAGTTCCCTTttaatacaaatagcaaatatttctattattaGTCCCCTAAAATAAACATAGTCaatacatttaaaagaaagacCCAGTT-ATTAAACCACAGGCTTGTCCCAGAAGATGTGGAAGTGTTGCTTCTGGTGGAAGCCTCATGTTCATGGCTTA----GCTTTGTTTTGTAATAGTGGCTCGCACAGAAAGATTGTGAGCTATCACGTGGTCCATCTCTGTAACAATAGTCATCATCCGAACAAAGCTATTTGATAAAAGTATTATGAAGAATTCAGCAGCCAGCGAAGAAGTAAACAGC-------------------------AAAGGGACCAAGTGAGAGACAAAAACATTTTCCCCAGCCCAGACA---ACAAGTCGATTTCCAAGCACAGAACATGTTTCTCATATTCTAAATCAGCAGGGCATACAATGAAACATCCAACCTGGGAAATGAAAAACA-CCTCTACCTAAGAAAGCGTAAGGAAAAACATCT----TCCAGTAATCGAGTAAAGTTTGCTTACACTAAGGGAAAAGGCTTTATTGTGGTTCAGTTAGAGattgtttttaatatacttaCAGTTTACCTTGATTTATTCTTTCCACTCAATATCTGATTCCCTTGATAATAGAGGAGGATTAAAATATTATCATCTTGGCACCTAATACTGTGCTAGATGTATCCTACATAGATGCTCAGTTAATTTCAGGATAGCTAGTTTTTCCAATA----AAGTTGGAAATAAGGAGAATATATAATCAACACGACAGAAAATAAGGTATCGCTGA---TTACTACCATTCCTGCTTAGAATTCCTGTCTGCACTCTTTTATTTTCCCTACTTTGTAGTTATT-TCTAAACTTCAACCTAATTCCACGTCTTCCACAGAAAATGGTTCTTGATAGCCAAGATGCAGAAATGCTGGCAGAATGTCCCACTCTGTGCCCTGTGACTCCCTAATCATCAGTCTTTTAGGATAAGTCACCCAGCCGTTGGTTAGCACTGTTTCACCCAAAATTATAG-------CAGGGCTCAGAATTACAGGTTTTGTTAACATTGAAATTAAATGctaaatgatttttaatgttaaaaagattttgaaaaggaATTGACAAATCAAGGAAGAAAGATAATAAGGACTAA-TGTAATTTACAGTAAATTATGgatattcttttcc-------ttcttttaagttTAAAACGCCAAA-----TGATGTCTTTGCTGAAAACAATATGATGCATTATTTGCAATTTCAGTATTCACATGAAGTTGGTTAATTAGCAGACC-TGCACTTAAATGGGAAAGTCATATTTCATGTAGAAATTGACTTAAAATTCAGGAGAATAAAAGTTGGCATGTCTGTACATTAGTCATGTCTATTAGAgaaatttgcaaagaaaaatcCA

a score=42136
s chr3           151275756 2166 + 160039680 tgtgtgcacacacacacatgcatgaatgcatgtgtatggatgggaGGTGATATATTCTCCGTCCTACTTTGGAAGGTTTGAAAACGAACTGAACCTCTCACTTCTTTTATGTCATTTTCTTGATGTATTTCATGAA--ATTG--------TTAGTATTTTATGAAAAACTTCTCACATTTTATTGTTTAGAATTTCCTTTCTCATTGAACTGTGATGGTGTGTTCTTGGGAC----------------------TTTCAATATCTTTTCCTTCTGAGAGTTACTTCCATGTTCCTGTTCTTTTGCATGTTCTTTAATACCTGGAAATTCCTGGCAGTTTACACTTGTATGTACAAA-GACAGGACAACCCTCCACAGGATAGCATTCAAAATAAGAACAAATGCATCCCCATTTACTTTATGCATTAAACATTTTTCTCCAAATATTCCAGAAAAAGAAAGTTTTTAAATATTAATATCCTGAGTATTTTAAAATAATGTTCTTTAGTTACTTCTATTAATTTTTCATATT-TAGCAATTTAAAAATCTTTAGAGATCTGGGTCCTTTATAAATCCCCCTCCATTTTTTTC-----------TTTCTTTTATGAGATGTGATAAAATATTTTTTCTCAATACAAACTAACTTGTA---CCTGATATAAACTTACACGAAGCACACCTAAATTCAAATAAATAAAATATTGGCAAACAAATTTTCTGAGTTTTAC---ACAGTTTAAATTAGCACAGAAAAAAAAAAT--GTTTCTCAGAACAAGTGGCAGATACTTAGTCACCTTGAACT------AGATGGATCCATCTGAAAAGTGAGACTATTAAAAAGTGGAACC-TTACATCAGACACAAACATCCCACAGTAAAGACACCTGGAATCACTCAACAGA-------AAGGATGCTGATTATGTGCGTGGGTCCAAGCGTTCGCACCCTCTGTGAACCATTATTCTGACTGCTACTTCTAAATCCTTCGCTTGTATATTATCACACATTAGCAGCACCACATAAATGCTGTCCTTGTTTGGCATGATGGACGTCTTGGCTCCACTGTTCACTGTATTCGAGGCACTTTTTCCTCAGTCTTCAGAGCTGCACAGATCCCTTTCAATCTGCTTTTA----GGAAGGTTTCTCACTTAACAGTTTAAGAACACGATCACCCAGAAATTCCCCTTAGCCAT-TTCAAAGTCAATAACATTGAAACAACATTCATAGTGCCCTCT-AACATAGGACCAAATCTATATGACAGCTGTGGTcaaatacttatacaaagtacgtgcgcatgcacacacatgcatacacatacatatacataaacatacacacacacacacaccATTCTAACCATAGATTCT----------GCATG---------------GAAACTTGTAGATGGGAAACCCTGAAGTTTTGTCTAATTA--TTTGATGATTATTGAGACATCATTATGGCCATACTTCCTTAGGCTGCTGTAGGA-----------------------TAAGCTATATGGGGATGCATTATCTCAAACACAGCATTACAAACATAGTGTATTGTGGAACAATGTGATTCCCAAACTTATAAATTAAATAAATTCATTTTAAGGAAGA-GTCAGAAGGGAGT-------------------------------CAGAAG---------AGTCACAAGTAACACCATAGTTGCATAGATCCTATGTAATC----GAGTCCACATAGACA---AATAT-------GAAGTTGCAGTGGAGCAAAGTATTCTCTTTACCCTGC-TTTGTCGATTTCTTCCTCACTCTATTTCT-TCATAGTACTTTT-------------------------------TATTCCTGAGATACCAATA--ATCATCTTTTGTTT-----TAACTAAAATGCAAGCCTTGCAACTGTATTGT----GTATtctctctctctctctctctctctctctctc----tctctctgtctgtcaat-------------------------------------ctctctctt----acttactgct-gAGCTTAGCCTACAACAGTGACTGCTACTTAATCTGTGCTAAGGAAATAATAAAACAATGAGCAAAGGTATGAACACTGAAGAGGAAAGATTTATAGTCAAAGTGATACAGCAGATTTCCTTGAATAACGTCAGGAGAAGCACATCATGTCTATTGGCTTTCTTTAGAAAGCATGGACAGTAAATGAA---TATAGTTTCCCTGAAACAGGATTCTACATTCACTAAAAGCAAATATAAGCTT---TGTCCAGAAAGCAGAATAAAGTA-GGCAAGAAAAATTCAGCCATTAGGACTGAGGCACTTTG----CTTTTCTTAAGAATGCAGTAGTTACTAATATCCCTGAAGGCAGCTTTGAA
s HiC_scaffold_1 137863648 2348 + 233722169 tgtgtgtgtgcacgtgtgtgtgtgaatgctcacatatgtgtgtg--------------------tactaTGATAATTATTAA-------TGTACCTTCtaattttctga-ataattttcat----TACTTAATAaataattacttttgttttaGGATTTCATAAAAAA-TTCTAATATggtatt--tcaaaattt--ttccatATTGGATTCTCATGAGATATTCTCAAGACCTCAGTAGCTTATGTTTATGAGTTTTACCTGCTTATGTTTATGAGTTTTACCTCTATGTTGCAATTGACTCAAATTCTCTTTAATGCCTGGGGATTCCTGGCAGcttatatttgtatgtataaaaGATAGGCCAAATCTCCGTGGGAGAACAttcaaaatatgaacaaatatatCCCTGCTTACTTTATGCattaaacatttttctccaaatatttcaggaat-gagagtttttaaaaattaatatcctgagtattttaaaataatgttctttAGTTGCTACgattaatttttcatattatagCAATTTAACA-TCCTCAGAGTTCTGGGTCCTTTATAAATTCCCTTCTGTCCTTCTCCCAGGAAACTCTTCCTTTTGTGAAACCTTGTAAGATAGTTGTTTGGAATGCAAGTTAATTTTCATGTCATGATTTTAACTTAAACTAAAAAC---CAAGTTTACATAAATACCGTC-------ACTAGTTATCTCTACTTTCCTAGATAATTTAAATTAACACAGATATAAGATGTTTGTATTGTAGGACAGACAAGAAAAGCT-ggttccttttatttcctttaaaatagacCCATATGAAGATACAAGCTATTAAAAACTGGAAACATTATATTAATTGTAAGTGACCCTCAATGCGAACATCTAGAAGTACTCGACAGATTTGCTGAGGAATGTTGGTTTTACACCAGG----AGTTGATTTCACT-TCTGTGAATCACGGTGGTCAATGTTGCCTCTCGATCCATTGCCCACAGGTTATTGCTAACGAATGACACCAC-CAGACACCATCTCCAGTTGGCTTGGTGCACCTCTACGTTCCCTGGTTCATGGTTTTCCAGGTGCTTTTCCATCAGTCTGTAGACCTGCTCAGATTCTGTTGAATCCAGTCTCGTGATGGCAGGTTTCTCACTTAAGGACTCACACATATAACTGCTCAGAATTCCTCCTTCGCCATCTTTAAAATCAGTAAGCTTAAAACAAGCTCAGCGCTCCCTTCTGGACTTAGGGGCAAATACATATTCCAGCTGAGTCCA-----------ACAGTA-----GCATA---ACacatacacagatacacacacacacacacacacacacacacacacacgtcttcAGCCTTGGATTCTCCTCCTGTGGGCATGCAGGATTTCAACCGTGCACCTCGCAGACAGGAAAACCTAAAGTCCCGGATGCTTAGTTTTCACGACCATTGAAAAATCAGTAAAAGCAAGTCTCCATGGACTACTACAGGACGTTgaaatttttctgtcttccttcagCTACATCT---TAAATCATTTTATTCTCAGCATTTCAAAGGGAATATGCTGGGGATACATGGAACTCTCAAAGTTGCAAA-GAAAGATATACGTATGTAAGAAGATACTGGGAGAGAATTCATACTTATGTGGATGCCATGTAACGAGAGCAGACGGGTTTTCCCAGCTACAAGGTA---CATGGTTG---AAAACCTGTATCCTCCCCTGCATCCACACACACAGGGAATCTATGTCTAGAGGTTTTCTTATGTGTGAGTATTCGCatgctcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttatgtgacTGTTGGGCTCCAGATGGAATATGGATTTGGCTCGACATTCAAGAGAGAACACTAAGATTATTTTAAGGTTACATATAAGCAAATTAGGAG-TTTGCAGCAAGATAGCAAAAATATTTCACCCCTGCCtcactttgctcattttttatagTATTTGTGACTTCTAATGTATTGTGGGGTTACAAAAAATTTATAAGCATATGAGCTTCCTCCTGTGCATTCATTGCTCAATCTGATAGTAGAGTAGCACTTGGTGCATCATATATGCTCAGGAAAT-ATTAAATGATAAGTGAAGGAatgaatataaaagagaaaagattcatATTCATAG-------GTTGAATTCCTTTAATGGGTTTGGAGGAAGGATATCATAAACATAAtctttccttataaaatgtaaagagtaaataaagacTAACTCTTCCAAGTAACATGACTCTGTGTTCACTAAAAGAAAATCCATGTTTTCCTGTCt-ggaagcaaaataaagcagGGCAAAAGGGACTTAGCTGCTGGGG--AAGGAGCTTTGTGTCCTGTGCTGAGCTATGCTGTGGTCACTGCTTTTTATCAGGGTAGCTCTGAA

a score=67001
s chr3           151278574 3564 + 160039680 TACTAACCAGTGATCGCAGGGAAGAGTCTC--CCTTGTTGAACCAAGTGTCTTCATTTGTCTCCCTGGAGTACTGTAATTATTAAGAGACATAATGTATGAGGGCATTTTATTCCTGTGTGGCATGATAAATAGTGAGGGTGTTGATTGCAAGGGCAATGTAGATTCTTTTAAATTAACTCATATAAATAGAACAAAGTAAGTATCAGCTTTCTAAAGAAAATTCTCTTTACAGATGATATATAATTTCTTTAAAAGCCCTTAAAAAGATCTACCTGTATTCCTACACTTTTAATCTCATTATAATTTGGTAAAAATGTGTCCTTTAACTCCAGATATCACAGAACGTTATTCAGCCAAAAGTTAGGACAAAAAATAAAAGTCACATATATAT-----TTTCGAGTGTGCAGAAAACACAAGTATCTGAGACAA-------------AAATATTTTAATAAATAGTCAAAGTTGGCACTGGAGAAAGACCTTCGACATAAAAATGTTTTGCCTTCAGGCTTTGGAAAGTATATTCAGCTATTGTTTCATCTGGAATGTGTTCTA-GCAACAAATACAGACAGATGCGTTTACTAATGGGCCTTGTTTCTTCCTTGTTCTCAGAGCGTTCATTT--TTCCATGACGGATGAAGTTGTGTTCTGCAGTTTTATATTCTGTAGACACCCGTGCGCATACACAGTGATTATCCTCACAGTCAGGCAATATATTACTTTAAATAGCCACTAGTATATATCACAATTTCATTAGATG-CCTTTCTTGTAATAACAATGAAATGCATCTATTGGGGAATATGTCAGCAGCCCTGCCTATGCATCTGTCTCCCCTAAAGGGAAATTTTTGCAGCTAAAAGACCTTAAAATAAAATTCAAAAAAAAGAAAGAAAAAGAATTTCAG-TTTTAAAATGTCAAAAGCTCCAGTGAAGTCAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtACATGCCCATTTGTGTGTATTTGTATGAATGTGTAGATTTACAGTTTCCCAAAGCTCAAACAAGAACTCTCAGAGCCTGACTGGATAAATAATTACAACATGAGCAAAGA--AGCTGACATA--------TTCCATT-ACAGTTCTTCACAT-TCCACAGCCTTCATC---ATTCCTGTCTCCTGTGTCCAAAACCTGTAACA--AGCTTCCCCAAATCAAGTTTTCTGAGACACAGACAATCTGAAGTCTCACCCTCCATGATTTGGAAATACCGCAATGTGTCCTGTGTCTAGGCTCTTATAGCTCCCTTTTCTGCACAACAATGGGTTTCTTAAATCAACTTCTTGGTTTCATATTGAAAGTTGTTAGTATGTCTCTCATGAGCCAAATTCAGACCATAAACTACCAATGTAGGTCAATGGTGGCAGA--AAAGTGACTGTCAGCAGCCATTCCTTCTTCTCAAgcttccttcatacgacaaggcagagttaaggaggctgcacaaagaacaaacggcccagtacatgtaaaatatatgggttttggaccatt----caagacaagatttggcgacccTGAATCATTACTATACCTGC-CTCTTAGTTTTGTTGTTTTTGTTTTTTTGGTTTTTTTTGTAAGAGCTCTATAAAACCACTTTGACTCCTGTCTCCTGGAGCAACCCTTGGAGTATCAACTGTTAAATAGGCATTTCCTGTGCACTAACATGTTGCCTCTTAGAGGGAAACATCTCAAGGTACAGAAAGCAGAAAATAATAATGTCTGGAAGTTAAGGAAATCC------ACAGATTCACAGGGTTGATCGTAGAGCAGTGACCGTTTCTAGGAAGAGAAGGTTCCAACTGCAAAAGTCACCTGTCTATTCTGCTGAGAGCTTCCTGGATGTAGGTTTTAAGTGggggtgagctttggggtggtgtagatgcctttgagtcatccttggtcctctaaatactccttcactaataatattccagtaataaactaagatccctaacaaactcaccagttagctaagcaagac----ttgagtggatgcggtt--agtttgcctatcactgttgcctggtccaggatgaagagatattttgtcacattttctcaagaaaggCCACACCCCAATCTCTCCTCAACTCACCACCTTCTACCTACACAGCTGATA----------ATCCTTTGGGGTTCACCTGCTGCTGCTAAGGCCTATAAA------------TAATATTAAGGGTCTTCTTAACTTTTGAAATTGCAGAAAAACATTTACCTGCCTAACTTTACCC----------TAATAGGTCATACCTTGTTTGTGTTAAGATAGCAGTCAAGAGGGCTAAGTGTGTTTGGAGG-------CCAAGAATAGGTCTATTTCACAACTTCATCCATACCTCCTTATTCACCACAGTGTTTCAGCCACTGGTAAATTTCCATAAATCATTGCATAGTTACACTAAAACTAAAGATAACTGACTGAAGTTTGCACGTTGCTGAGTTCTCAGAAGCCATTTGTGTTGGGTACACTTTAGTTTGGGTATGAGCTTTAAAAGATATTTGcttgggaggcagaggcaagagggttgtgggattgaggtaaacctgaatacacaattagactctgtcaaaagaataCTTAAGGTAAACTCAACTTGGCTTGCTCTCTGCATCACTATCCATAGGAAGACAGTG----------TCAGAAGAGTCTGGAGGCAAAGAACTGCCTTGCATTATGAGGTAAATTTTCAAAGctcagacaaaattttct---gaagggtacattttacaagtgaagaggcccag--gagttttaaatggactaatataagtgatgatcctgacctccaaa--------tacaaccctgattaatgaatttccaatgagccatcctctCA-------------------------------------------TCGCTCTCTCTCTAGACGTGACATTTACTCCCAGATAACAACTTCTTTAAAAGTTTCTCAAGAACTTAGATGAACAAAAGACAGGACACGAAAGGACTTTCATTTTCGTATTTATCTTTTTAAAAATAGTTATTGCCCGTTTGTACAATGGCTACTCTGTTTGCCTGCTGAGTCC-TACTCCAACAGTGTCTCATTCATTATTTATAGCACACATTAGGATACTTTGCGTATGGACAGTGCTAGAGAAAACCAATTCTCCTCTTCTTATTGTGTTAATCCTGGATTAAAATTAATGAATTTTATAGCAGAAAGAAAATGAAATAACGCGTAAAGCTAATATGACAAATGCAATGAAACGCAGAAATTTAATTTTTAATACTTCTCATTTTGTAACTTCTTCCGGGAGTATGATGTGATGTCTGCTTTTATTCTGTTATTTCCATGAACCTTGTGGTTAAAAGTTATTATAGTCTATGGTTTGTCTTCACTAACCTAGCAGTGGGGAAGCTGTCCAGAATCAAAATGTGAATTTATCCACAACAATGAATCAGATAGTCTCAAGCCTTCCCATTTACCCTTTGTTCCAGTAACACCCGTGCTCTTCACTCTTCCTACCTGACAACCTCACGTGCACGTACAAGGAACTGGAGAATTTCTTACAGGATTTGACACATAACACAGCTGACAAAATCCAGGTCCATAGAGTCTT
s HiC_scaffold_1 137866211 3110 + 233722169 TGCCAACTGGTAATCACAAAGAAGATTCCTAATCTCTCTGAATCACATGTTCTCATCTGTTTCCCTGGATTGCTGCAATTAC-AAGAGGCATAATGTATAGCGGTGCCGTATTCATGTCTGGCATGATACACAGTGACGATGATGATCATAATGGCAATGTTGATTCATCTAAATTAAGTTATGTAAAGG----------AGTGTCAGTACTCTAAAGAAAATCCTCCTTCTAGGTAA----------CTGCACAAATTGTGAGGAAGATCTCAAGGCCTCCATTTATTTCTAACCCCTTGATAGTATAGTA---------CCGTATAC-----ATGTCACAAAACAA-ATGCATCTAAAAATTAGGACAAAACATTAAGTGACAATATGTGTGTCACTTTTTAATAAGCA--AAACATAAATATCTAACAGAATTTTAGTGATTCAAAATATCTTAACAATAACTTAAGGCTGGTATTTTTGAAAAGTTCTCAACATAAAAATGCTTTGCCTCTAGGCCTTGAAAAATG-----GGCTATTCCTTCATCTGGAGTTTGTATTAAGGCTCAAATACAGACTGATGAGTTTACTAATGGTCCTTGTTTTTCCTCCATTCTCTGAGCACTCATTTGTTTTCCTGACTGATGAAGTTTCCTTGTGTACTTTTATATCCCATAAACACACATGAGCATGCACATTGATTATATTTTCAGTCAAGCAATACATTACTTTAAATAGTCACTCATATATATCACAATTTCATCACATGCCCTTTGCTGTAATAATAGTAAAATGCATCTTCTGAGGAAAACGTTAGCAGCTCAGTCTATGAAGTAGTCTAACCT-AAGGGAGGGACATGCAGCTTAA----cttaaaat----------ataaggaaagaaacaGTATGTTGGCCtctacaatggaaaaa--------aaaatcag-----------------------------------------------gggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcacacg------------------------------------------tTTCCAAAGGAAACCTAAAAGTTCTCAATGCCTGTTGGGCTACATGatcctgaaataaagaaaaatgatttgaaatgTCTAGGCTTTCCTTTGGTTACTCTTCACAtctctttatcttttgttttggtcCTCGACTCCAGTGCTGTAAGACCGTATCAGTGACCACTCTCAAAAAAGGTCCTTGA---ACAG------------CTCTGCC-----------------------TGTGTCCCTT------GCTCTTGCA-CAGTGATTCCTACCCAGCTCCAGATTCCTTTAAACCAGCACTGTTGTTCATTTGAAAGTTTATCAATTTGGCTACTCAAAGCCAAATCCCAACTGTCATTTGTTTATGTAAGTAGACTGTCATAGAACACAGCCACACTTATCAATTATCTC----TCTGTAGCTTCTTTCATGCCACAA---AGAGCTGAGTAGGTGCCATGGAGACCATATGGCCCACAGAATGcaaaatatttactctctggACCATTATAGAAAAACATGTCTCGCTCACACTACACTGACACTGCACTAACTCACTCAG----------------TCGACAGTTTCATTTGTA----------------GCTTCAGCTTCTGCCTCCTA-------------------------------------CCCTGTCTCCTAATCTGGTTT----------------------------------------TAATTATCTC----GGTTTTGGAACTCTTACCCAACATCTTC----------------------------------------AATGTTCCATTT-----------------------------GTCTCTTGGATGCGGCTTCTTTATAA------------------------------TCAATCCATTTTGGTCCTT----TTCTCCTGCAACA--CATATCCCTTGGACTACCAGAGCTTCCAAAT-ACCTGAT--GTCAGCCAAGCCTGACCCCATCCAGACAGTGCCCTTTCAATT---CTATCAGTGTGGTTTG----------------TATTCCTCTGGATT--------------CACATGCTAAT-------------AGGACCTTTGGGAGATATAGTGCATGTTAATGCATTATCGTTTTAAGTTTAACTTATAATA--AAAGTGTGTAAACCTAGCCTTCCCTCATATGTTGTGTTTTTCTG--CTTTGAA-----AGAGTAACCTTTAC--AGTTGAGTTCATTTTCAGTAGAAGTGACAAATTAAAC--TGCTT-TATTAGAATTCCTCTCAAAACAATAAAGTGATTTtggaggatttagttcagcaat-GATTTATTCCAAATTTGCCTTTACATC-CCTCATTTCCAATAGTGCTGAAGATACTGCCATGCTTCTATAAATCACTGCATGTTT--ATTATAACCAAAGAGAG-------------GAACACTGTCA---CTCCTGGAGTCATC-------------CATCAGGTTAGGTTTGAGCTTT------------CTT----------------------------------TAAGCTTCAA---------AAACTTGG------GAGTA-------TAAATTCACCTTG----GTAATATGGATTATTCCTTGCAGTGAGGCAATATGTTTAATCCTCACCAGGCTCTAGGAGCTATTAATTGTCTTGCATTGCTTGGTCAAGATTCCAACTTCAGCTCCAACTTCTTGGAGAAGGACAAGTTGTAGAAATACAACACTCCAGTAGAGCTTTACTTAGGCTG--ATAAGTGATGGTTATGATCTCCAAATCTCTAAGTACAACCttgaatacagaattttttatcAGCCATTCTCTGATgatgtctctgcctctgtctctgtctctgtttgtctctcaggctctttctctttccatctgtGAGATATACATTCAGATAACAACTTACTTAAAAGTTTCAACAAAGTTTAGAGGAACAAAATACAGGACATAAAAGG----TCATTTTAG-------------------AGTTAACACCAGTTTGTACAATGACTCCTCTATTTGCCTGCAGAGTCCGTATTCTAACACTATCTCATTCATTATTTATAACACACATTAGGGGACTTTGAGTATGGACCATGCTACAGAAAAGCAATTCTCCTCTTCTCATTGTGTTAATCATGgattaaaattaatgaattttacagcagaaagaaaatgaagtaatGCATAAAGGTAATATGGCAAATAAAATGGTattcagaaaattaatttttaatacttttcattttgtaacttctGGATTGAGTATGATGTGAAGTctgcttttattctgttatttctctAAACCTTGTGG-TAAAAATCATTACACTATATGATATATCTCCAGTAACCTAGCAATGTTGAGGCTGTCCAGAAATGACATATGAATTTAACCACAACAATGATTCAAACTGTCTCAAGTCATCTTGTGTACCCTTTATTCCAGTAATAACTATGTTCTGAACTTTGTC-ATCTGAGAACTTCATGTTCAGGTTGTTAGAACTGGAGTTTCTTTAACAGCATTAAATGTATATCATAGGTAACAAAAACTAAGTCCA-AAAGTTTT

a score=23417
s chr3           151289383 1221 + 160039680 GGGGACTGAACTAACAGATAA--AGCAAATGTCCACCATGGAATCACAGCACATCCGCTAGTCATTCATTGTCTTTCCTAAATAATACGGTAAGGACAGTCAAGTCGTCAGAATTAAACGCTAATTTCAACCTTCGTATCTGAAATGTTTTCTTCCCCCACATCCCGTC-ACAGTAAAAGCCTCACATTTTGGATGAAGATTATATAGTACA----TGCTGACTTCTTTCGTTTTGATGCAAACTCTTTTCAAATCCATCAATGTACCACTCGTCTCTCTGATTTTTATTCTTGTCTAAATGGATCTGCGGAAAATAAGCCACAATGCATGC----AGTTGGTTCTCAGGGAGCTGGTACCTGTGTTTT-TAACGTGTTATGTTTGAACAAGAACTTTTGCCTAACACTTGGTCACTTACAACACTGCCTTAATGGATGGAGAAGCGGCTCTAACACCATCAGTCACAACAAA--ACATAAGAGAAC--------CCTGGGACAGGTCATGCAC--AGCCTCCCAGAGCCATTTACGCAACTGAAAGTAAATTA-CCTTGAAAGAAAGTAGGAGACCATTGAGACAGCAGAGTTTCATTGCTTAAGAGCACAGG--CTATAGATTAGCTGCTTAGAGAGCATT----CAGTAAGCTTGCAGCTTTTGTCAATGGGCTTCATCTTCATATAACGGACAGCATCAGTTACCAGTTTACATTATTAAGATAGTTACAGGATGCCACACACATTAAAGGACCCCCAGCAATTGCTGGAGCATGGTGAGTGTTGT-TTGATTGAAATACATC--TATAATAAAATTCC--ATGTGCAAAGGAGAAGGAAGGACATGA-CTGA-TAACTGAAGGTG---------GTATAACTCAGCATGCCACACAC--TGACCCTTCAGACACAATGGCTCTATCAAGTC--ATTCGGGGGGGGGGGGAGCGAGAACACAGATGCTTTAGT-------AGTGTCTAACTCaaaaaaaaaaaaaagaaaaaaagaaaaaCTTGTATTTTGGCTGATAA-GACATGAATGAATAATTTTCAGGATAAGTACAAAATTTAAATATTTAATCAGACATTTCTTTAAAAATGAGGGGGGAAAAAGGAGATTCTAATAGGGCTGAAGGAAAGGCAAAAGGA--ATTTTAAATG--CTGTCTTCACAGCAGAGCAACCATCT---TCTCACAGTTCTTGCTG---CTCCTGCTGTCCTGAAAATCTATGCCAGTCATAACAGAGTCAGCCTCAGAACCCATCACATAGCAC
s HiC_scaffold_1 137880734 1202 + 233722169 GGAGACTCAAACAGCAGATCACAGACAAGTTTCCACCATGAAATCTTAACATA---ATTATTAACTTGTTATCTTTACTAAACAAGA----AAGAA-----------TCAGAATGGAACTATAGTGTCAACCTTTGTATTTGAAATGTTTCCCTCTTCCGCATCCCTTCAACAGAAAGTG--------TTTGAATGAGGATTACACAGTTAAACTCTGTTTCCCCCTTTCTTCTCAATACAAATCATTTTTGAGTCTATCAGTTTGTCTCTTGTCTTGCTGATATTGATGCTTGTCTAAAATGATCTG-GAAAAATAAGTCACATTGCACTCTTTGAATAAGT------AGAGTCAGTGCACACATTGTACAAGGGATCGTGTTTGAACAAGAATATTTCTTCAGCAGTTGATCATTT-TAAGA-TATCTTAACTGACAGAGAAGTAACTCCAAGGCGGTCAGCTGTTTCAGAGGACAGAAGAGTACAGTGTCCACCTGTAACAGGTCTTACACAAAACCTCCCAGGGTTATTACAGCAGCCGAAGATAAATTATTCCTGAAAGAAATTGTAAAGCTGGAGA-ACAGCATAG-AAAAGTGGTTAGGAACACAAATTCTATATTTTAGCTgcttcaatggaatttttgccACTAGCTTGTGACCTTGGTGAAAGTATTTAAACTTCATATAAAAGATAAC-------ACTAGCATACATTATTTGGAGGATGAAGTGAATTAGTATAAAGTAAAAGACTTGAAATAACGGCTGGTacatggcaaatattttctttattgaacCATATTGACATAGTACAGTACATGctatggaagagaaaaatgagaagatgaTCTGAGGGAATGATTGTGACACGTTAAATATAACTAAACATATTATACACTTTAATCCACTTTAC-CAATGCTTCTATCATAGCAAATTCCAaatgaaacaa---gagaaaagtaatgttTTAGTACTTAAGAGTGGCTAACTCTA---------------------AATAACTAGTATTTTCTCTGAGACTAAAATGCATGAATAA-TTTCAGGataagaacaaaatttaaatattttatcagacATTT---------TAAAGCAGAGATAAAGAAA-TCTA--AGAGTTCAAGTAACAGCAAAGGAGTCATTTTAAGTTCCCTGGGAATACAGCAGAGCAAATGTCTCTGTGGCATGATTTGTTATGTGTCCTCCACTTCCTGGAAAACC--TGCCACTTGCAAC----TAAGACTCAGACCCCACCCAGTGACAC

a score=58786
s chr3           151291273 5043 + 160039680 [encoded data, 5483 characters]
s HiC_scaffold_1 137882072 5102 + 233722169 [encoded data, 5483 characters]

a score=41123
s chr3           151298082 3999 + 160039680 [encoded data, 4884 characters]
s HiC_scaffold_1 137888121 4589 + 233722169 [encoded data, 4884 characters]

a score=99970
s chr3           151306154 4823 + 160039680 [encoded data, 5411 characters]
s HiC_scaffold_1 137896059 4974 + 233722169 [encoded data, 5411 characters]

a score=8933
s chr3           151314835 234 + 160039680 ATCTTTCCTAATGCAATTTACAAGGAGAGAGGCA--------CTGAGCTCTGAGCTGTGATAGA----GAGTTGCCTGAGGAGCCAACTACTCCATCACTTCAGAAAAGTTGAATAATTCCCATGAAAAATGAGTTCTTTCTGTTTTGATTAAGAAAAGTCCAGCTGAACCCACCTATAAGCATTTATATCAGCTTT-----ACACGGAATGCCATGGTTC------------------AAATCTACAGCATTCGTGTAGAAGAAATTC
s HiC_scaffold_1 137923873 269 + 233722169 ATCTATGCTAATATAATTTActaggaaggaggaaggaagaagatgAGGTGCAAGCTCTGATAGACGGAGGGTTGCCTGAGGATCCAGGTAGCCCAGCACTTCAGAAAAATCGCATAATTACCATGAAAAATGAATTCTGTCTGTTTTTATTAAGGAAAATCTAACCTAAAATGCATATAATCATTTGTGCCTGGGTTCTGGCATGTTGAATGTCATGGGTtaggagagaggagggaaaaaaaatcacaaaatgtgcATAGAAGGAATTC

a score=18771
s chr3           151323619 1203 + 160039680 TTTATAGAGTCTGTCGTATTTTAT-------ATTTCTAGAACTTTACTGAGAA-----GTTTGTTGATATCTTAAAATCTCATATTTCAGACATTTCTT--AAAAACACTACC-AGTGACA---GATCCTTTGCAGA---GAACAATGATGTTTAGAATTGGAGATTACCTATAGCTTAAAAATGATCTTAAATTCTTATTTCC--------------ATATACGGATAACATTGACTGTTTATTTTCAGACTGAGAATTAAGGACCTTAATCCTCTAGTGAATAAGGTATAACC-CTGAAACGTG--TTCCAGTGCCCTTGTTAATCAGGATGTCCTACCCTGAGGACCTGTTCAATGCCTTGTCAAACAATAGACAG--------GCCACCAGAAGCCTGGT------GTGGGCTCTGCAACCTGGGTGTGGTCCCTGGGCTGATTACTCGGC----TGAGTAGCACACTCTGAAAATAGAAAGCCAGCCTAAGTCTGCTGGCTCTGGATTTTTATTGTTCAGTGGCTACAGGAAATCAACTCTGCCCTAATTTCCTACGTGATTCAGTAGGGTTAAATATGAGGGTACAGAGTCTCATGTGACTGACCTTTAATTACATCCTC---AGGATAGACTGCCTGATGAAAACCTTTTTAGCAGAGGTGCAATGCCTGTCAGTGTCAGGGATGTGTATTTTTGCTTGTATTACT-AGGAAAAGCTTATGTGTTCTAAAGCTGTGTTTTGTAGCATGAAGAATGTTCTTAAATTACAAACTATGTTGTTGAAAAATTTTAAGTGTGAAAAATGAAAAAATAAAACTATTCAAAGAAGCTATACCTAGTCATAGCCTAGTCATAGATGACTAACTTGaataaaatataatttatttcta--------tattttt-acttatatataaagttcttaaatttttaaCAGATTTTCTGGAAGCTCCTATAGTGTTAGACATGGTCACTTCAATCTTTGCttataaattttatatatttaaCTAAGTTGGAAGTATTGCTTAATAAGAATGTAAAAAAATTATAAAACACAGCATGTATTTTCTAAGAAAAAACTGGTCATATTGACGGATGGATGCCACTAGCAACATGGCTG-CCCCTGTGGAA------AAGCAAACAAAATAAAAAATATCCAAGCCACGCCATCAGCTGCACAGCTCTTGAGCACAGCTGGAAATGCAAGGCAAGAACTGCCTGTGACATTTTCAGCTAACCCCCACAAAAATGGCAGTGTAGAGATGCAG
s HiC_scaffold_1 137915738 1187 + 233722169 TTTGTAAAAT-TGTCTAATTATATCATCTCAATTTATAGAGCTTTGCCAAGAATATCTGCATATTGCCAACtacaaa----atatttcagatatttttgggaaaaacacaaaagactgACATCTGATCTGTCTGAGGCTGAAACAAATATG----GAACTGGAGAATATGTCAAACTTGAAGTTT-TCTCaaattcatttttcccttcttgTGTGTAGATATACATACAGGAGGAAACCTGAATTTTTAAAGTGAGAGTTCAGTACCTTAATTTTATAGTGAATGTGATGTGACTTCTGTGGCATTGTTTCCACTGCCCTAGTTGATTATGCTTT----------GGGCATTCCGAATGTTTTGTCAAACAATAGATGACTGCTACTGTCCTTGAATGCCTCCTTCTACAGTGGGTGCCATGACCCGGGTGTGGTTCCTGAGTTGATTACTCAGTCTAATAGGCAGCGTGTTCTGTAAATAGCAAGCTAATGCCA-TCTCCAGGGGCTGTTTTTTGACTGTTCAGAGGCCACCGGAAATCAACTCTGCCCAAGTTTCCTATATGATTCACTAGTCTGGAAGTCAAAGGAATGCAGGCAAAT-tgggaaacctc--aacaaactctcaatagtacaaaacttcaaatgagaa-atgtttaaaagaagCACACTCCTTTTTAGTCTCTGGCATGTGCATGTTTGATAATATTAGTAAAGAAATGCTT-----TCCTGAAAC----------AGCCTCA-----------AAGTCATAGGATATATTGATGCAAATTTGCGAAGAGCAAATCTggaaaaac--------------------tgtctaattttacCATAATA--------------CGCTTACAGTgtgtttcatttctaattgtactTATTGTTAACTTGATTTCCAGGTTTATGACTTCTTAACATCTTTCTTTGGAGCTCCGTTATTGCTAGCTTTCACCATTATATCCTCAACCTGTAAATTTGGTATAC----ATATATTTCAAGGACTGTTTAATGGGCATGT-AAAAATTTCTAAACCAGAGCACAAGTTTTCTACAGGAACATTGATAATATTAATGGATCCACGTAATAGGCCAGAAAGTTGACCTTTATTGAAAACTGTAAACAAGCAAAACCAAGGCTGTCCAAGTCACTCTGGCAGCTGTTGACATCGAG-GTACAGCTGAACCTTTGCTGTAAGAGCCACCTCGTACATTTCTACCTAA-ACATACATAGATGTGAGCATGAAAAAGCAG

a score=12453
s chr3           151325736 1040 + 160039680 agtgtatatgcacaggcacacac-acacacacacacacacacacacaagcacatgcagacacatgctcctcttTGCCAAGCATCGAGCCAGCTTTAGGATCGCCGGTTGTTCATTCAGTTATCTTTAGTTCTTTGAGATGCTGCAGATGTCCAAAGCAGCTAGGTCAGCAGAAGCGTTATCAATGGAAAATAAAACTCCTAGTGA--CTTCATTGAGATAAACTTTGCCATTGATACTAAGGCAAAGAAAAAACCTGTG-GTTTTGCATACTCTTTGCTGACTTCTGTAAGAAATGTGATTTCTGCAGCAGTT-TATAACAAGGACTC-CGTGTTTGGGTTGGCTG---GGATTTT-------------------------TCTGTACTTTAAGTTCTCTGTTGATTACACCCTATTAGAAGGATTCGACTTAGATATTGCCAGTCAGGTTTCTC------------TTTTAAA---TGTCTGTCACATCCTCCAAATCTCCTGCTAGCCC--CACTT-----TATCCTTAAAATGCCA----AATCACATTAAAAGAACGTAAAGTGGCT----TTACATATGTTTAACAAATTTCACAACGCTCATGGTTCTTCCGATAT---GAAAACTCTAAATTTGGAATGACA-ATTTTTTTTCCAAAATAAATGCAGTTAATAAAACAATGAGAC------------------ATAAAAGGAAAACATCAAT-------------------------------------------------------------------------------------------------AAACAATAAGAATCGAAGTGGAAGAGGCCCACATTTTCTCTCGTCCTTGGATTGAACCCTTCCTGCAACACTTAGGAGTT-----CTGAGATTTTACATTTACACACAGTACACTGTCCCTCCACCTTTCGCTTCAAACAAAGCCCAGTGTGGACAAACATATACCAGCCTATCATTTATGATATTTAT--GTCATGAATCCT----TTTAAAATCTAAAA------TTGTAGTAGAAATTTTAGCATTAAAAG-------ATACAAAAAATACAATGGAGACCTAAAGAAACTAAGAGAGACTTAAAATAATCTTAAAGAACAGGTATGTTTTCTGACCTGCTCTAAGTCCCAGTTTACCTTCAGCTATGTTAGCCATAGACATATATAATAATTGCCTTAAAAGTTTGCATtctatggg
s HiC_scaffold_1 137918190 1183 + 233722169 AGTACAAATGGCAAGGAGcacaagaaacacacacacacacacacatacacacacacaga-----gttcccATTTGCCA----TCAAGACA----------CACCAGATGCTAATTTAGTCATCTTTGTTTCTCTGAGGTGTTGCAGACATACAAAACACTCAAATCAGCATATatattatcaa-gaaaaataaacttcctaCCAAAGTTTTTTTGAGCTAAACTTTATCACTGGCTCTAAATAAGACAAACACCCTGTGAGAAATATGTATCATTTGCCAGTCTCTGTAAAGA--GTGATTTCTGTAACAGTTCTATAATCACAACTCTCCTACTTAGGCTGGCTGTTTGGTTTTTAACTAGTTGGTCATTGTGGTCAATCTTCTTCCTATAATTTCTTTCCAAAATCTA-CCTATAAGAAAGATTCAACGTCACTGTAACACAGCATATTCGTCAAAAGAATCCATTCTTAAAGCCTGGGTGTCTCATCATTATAA-CTACTACTATTTTTGCACTTCTGTGTATAAATATAATGCCACaggaatagttttaa--------aaagtgacttgGATCCTATAATTTTAgcaaattttttcatgttt-tgtctcttctggcacaaaaaaaaatgtaattttaaaccCAAATGTTGCATTTTCAAAAAGAATCTGTATAATAGAATAATCAAATTAGCCTTTTCCAcccacaaaaaaagcaaaaaacaaatctataaaaatgaattaagattccgggaatttagcttagcagcacaagtacctgcctggcatgcgTGAGGTTATCacttcaatctctggtaccaaaaaaataaataaataacagaattgaGGAGCTACGTCTTTCCCCTTATCGTTGCAACTACAATATTCTTTGACCCTTAGGAATTTCATGCTATGAAACTGCTCTTGCAC----TTTTCTATTATtccacatttcattt--aaaaatactagcTGATGAGAAATATACATGGATGTATTATTTCCAATATTCCTCACCCATGTATTCTGAAActttaaatctataaaattcCTTAGAATAGAAACCtt--taataaaagtttaattttaccAAAAATGTAACAGAGAACTAAAGAAGTTGGGatacat---aaataattt----------atatgtattcTG----------AGTCAAACTTATGTTCCATCTCTATAACCTCTAGATTTCTATAATAATCCTGCTAAAAGTTTGCATTCTTCAGG

a score=185487
s chr3           151328060 6236 + 160039680 [encoded data, 6532 characters]
s HiC_scaffold_1 137919580 5927 + 233722169 [encoded data, 6532 characters]

a score=22114
s chr3           151337816 948 + 160039680 TCCTTTTCCTACTCCTGAAGAAACAATGTCCAAAGTGGAGTGAATCACAGAGAACTTAATAGTGTTACTATATAGCTG-------AGAACT-AAAATTATTAATAATCAACTATAGCAACAGAAAAGCCTCAAATTTACTTCATCTATCCCTACCTTTTTAAAGAGAAAAGGGGAATGAGTATGAACAGTAATCGTACCACCAAGG---ATTTCTTTCTCAGTAAAATATTTAGT-TTCTATATGAAAACCATCATAGGGTGCCTAGAAACAGTTGGCAACCCTTGAAACAGCTCACTGGGTTCATCAAGATCATACTTCACTTACAAACACTGTTACCAGCTCATG-----AAGAAAATGCTCC--AAAATTACCTAATTTTGTATTTCCACTTTAGAAAATGTCTTCCT-GTTAAAAATACAGGAAATGGAAAGGAAATCTCAATGAAATGTAATATTATCTGAACACATAAGGAAAGTTTTCTAAGAT------AATGAATCATTACCCTGTTTTTTATATCTCTGAGGATAGGTAAGATATTTTTCAAACTTTTCCAGATGGTTTTGGGATTTATTATCATTTCATAGTGAATCAACCATTTCAGAGTCACAGGAATGTATTCCCTGAT-GAAAATTATTCATCAACACAACCCCATTGCCAACTCTGC--AATATATAATGTTTTTCACATAAGTTATTTTT-------------------------------ATTTAA---TTCGTTGTTATGATCCACAAAATTCTTGACAATCA-----ATTTGAGTAGCATATCCATTGTATCATTTCCTCACTTCCATTTCTTCATGATAAAAATTCAAAAGTATAGAGCACGAAAAAAATGTTCAATTCAAATATCATTTACTCTTACAATGAAGATTATACCAAGACTC--TTCAGTTTACAAAATCCATTTCAACTTTGTAGGTTTGAA--TGAGAAAATTACATTCCAAGGTATCAACTGTGAGGTACATCAGCTGCAT--TTGCTTT
s HiC_scaffold_1 137928816 914 + 233722169 TCTTTCTACTACTTAtagaacaaaaaaatccaaatagtaagaag----gaaaaatttaataCTATGAC---ATAGCTggtaaagaaaagctgaaaataaatgaaaaaaatctattataattgaagaaattcaaatttgtttc-ttta-------ctattCAAA------------------ATGAACA----------CTCTGAGGTAACTCTctttttcactaaaatatttaGTGTTCTACCAAAAAGTCATCAAGGAGc-------------------tctttgaaatagttcattGACTTCACAGAGATGATATTTCATTCCCAAGGACT---AGCAGTTTACATTACCAAGAATATGCCCCCAAGAaatatctaattttaaatttcagctcAGGAAAATGTCTTCCCCattaaacacagaggaaataaaaaggaaac--------------atatcATCT------------AAAGTTTTTTCATATGTGTATAATAAAACATGACCCAGCTGGTTGTATCTCAGAGGACAAACAAGATATTTCATATCCTTTTACACATGGTTTTCG-ACTTGTTCTCATTTCGGAGTGAACCCACCATTTCAGTATCTCAGGACTCTATTCCCCAATCAAAAATCATCCATCACCACAATCCCATCACCAACTCTACCAAATACACAAAAGACTGCACATAAATCATTTTTGAGGGTCATATGAAAATAACTCTGATTTGAGATTTAAATCTTTGCTATTACGATCTATAAAATTTctgacaaataaaaacatttcagtaac-------ctttagctttgtttttctctcatttcttcataacagaaacattaaaatctAGAGTAC-CAAAAAACACTTAACTTATATTTCAGTTAATCTTATTATG------ATATCAAGACTCTTTTTAATCTACAGAGACCTTTTCAACTTTGtgtgtctcaaattaaaaaaatta-attatgtcTTTTCAAA-GTGAGTTGCATCAACTATATACTTGTTTT

a score=66749
s chr3           151349217 3046 + 160039680 AATATGTTTCTTC-------TCAGGGGATAGCAGCTCAGATTAAATATAGGAGGACATTTAATTTATATGA-ACCTATCTTTAGCAGTAATCAACTCAATATATGTCTATATT---ATGTACGTATATAGCAAGCATTTGAAAATAGTCCATA-----GCTCTATACGGAGAAGAAG-------------------------------------------------------GTTTTT---------GATA--------CAATAAAAAGTAATATTAAGGAGTTGTGAAGGAAGGGCTAAAGTCTTTATCATAAGTGGTATAG-------------TCCAAAGAAGAAGGTGAAACCGTTT--TATGTAAATGAAATGACTGCCAACTCAAGATCAATGGTTTCTACAAAGTTTTTGGTGAATGAAACAGAAGTCCACAGTTGCAGACTGCAAGTA-TTTCTGTGAAATGAACAAAAATTGTTCTTGCTTCAGCAGATCTCTGCGATTGAGTTCATAGAAAGGGAACGCTCTCACAATCGAAATAGTAATGGGCTGTATCGATAACTGAAAGCAGCACAAATTGAGTGCCAACCATACGAGAAGAAAGCGCCCCCAGTTCACCGAGTCAATAAAGATCACAGCGCTCC-TATCATGCTTGGATTGCAGTTATTAATCACACTACCCACTAACAGCAG--------------CTGATGATGGATAATCACCCATGCTATGGTGTCAGGTCTGTCGAGAACCAGGCAGACTTCGGACACATATTTGAGACCCAACAGAT-TGTCAGAATCCACAGTTCTGTACATGCTCAAATCAGT-----TGCTTTATTGTTATTGAATGCATCAAGAGGAAAAACGACAGAAGAACACTCCTTTAGATTTCTTGGATTGTTTTG-AAATTCAGGTGAATTTGTGACACATTGATCATGAACATGAAAGTTATTAGAAGCAATTGTTCCATAATAAAAATTGAGTGCTTGTAACGTGATTATGGCGCAAACATCTGCCACTCATGCAGACAGCATTCTGTAAACCCATCAGCCTAA--CTGTTTTCCCTTCTGATTGTATCAGGATAGCTTGCGGCATGACAGTGATTTGAGTGGCAGGCACCTACCCAGGTGTGCAGTGTTGCATGCTCAAGTTTTGTTTGTGGGAATCATCCCTCCTTGAAAAATGTAAATTTTTAAAGTTTTTTTCTATTGGAAAAAAAAGGCATATAAGGGATCCTCTTACCTTGCTACCTTTTCTCCTTAAAAAGTTCAGGTTTTTATAGTTCCCCGCTTCCATAAATATTTTACTAACTTTTTAAATTGACTTTTTGGTTTTGTAATGAGAAATACCATGAATTATTTAAAAACCCCAGACAGGAGAAATATATGTATGTGCATAGAGAGATAACAATATATAGATATATACACCGTGTAGTACAATAGAGAAAGACAATATTCCAAAATAATGAAAGCGTTCAGTATATGTTTAAACAAGGTTAACAATCTCATACTTACCTTTACAGAAC---ATCCAAAGTTATCTTCAATTTTTTAAGTTTTTTTTTTTCATGGCAGGTTTAATATCTGTCATATGGAATTGCAGGGAGGCGTGTGCTGTGAAATCCTCATTGAGCAAGTTAACATGTCAGAT---TGGAGGGGACTCGTGAGGCCA-----------TCTAGGAGCA-----TGGAATTCCCTTCCTGATATGCCTCCTGACAAAAATCTACCCAGTGTGTTTGTAAGTCATTGTTCCATGCTAGAAAGAAAAAAAAAAAAAAAAAACATATTTTAGAACAAAGCCAGCCTAACCTGCATATACTTCCACAGAAATAAACCACACAATAAAAGTTATCTTAGagctgggcatagcagtgcaagcttttaatcccagcactcaggaggcagaggcaggcagatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgagaaaaaaaaaGAAAAGAAAAAAGTAAAGAAAGTAAAAATTATGTAAAATAATGTATTGGTTTTCTGGCATAACTAATTACTTCAGTTGTTCTTAGAAAGTTTATACTGAAATATGCTA-----ATAAACATGAACACTTCTGTTAACAAAAT--AATTATAATGTCGCCTATACACTGAGATCACTTTGATCAAAGCATGACA-GTTTCCATCTTTGTTAAGACTGAAGAAAACAATCAAACAGAACTGAGAAAGAGAGGAAGCACAGTCTGGGTCACCACTCCTTCCTTCCCATGT-------TCT----TTCTCCTTACATGCATGTGATCACGGGATGGGGTCATGGACCAGACTCTGAAAACAGCTATGGACCTTTATGTAGCTTGGGCAGACTCTGGTCCCTTCCTAATCAGCTCATCCTCTCTCTTCAATTGTATCACTGTTGAAGCTGGTTTCATACATTGTGTGTTTATTCGTCAAGCAGAAAATTGACTGAGGAAGAAAGAGAATTCTTCAAAAGAAGAAAACAATGAACAGTGACTCCCATAGGCTTGGGCCAGAGCTTAGCTAAGGAAGAAACCAGAttccttttctcctttttttttgttttttgggtttttgttttgttttgttctcttttCAGTCAAATAGCCTCAAAGACAAGTTGGCCCTCATGATCAAATGTTTGTCTTTGAATAGTTGGCTGGCATCCTCTGAATCAAGTCGTTAATCAGAGGAATGTTCCAGTGGCTCTCCTCAATGTTTAGCACTAAGAGGACAGGAATCTAGACTCCAATCCAACTCTGTTATTCTTCTGTTTAT---ACTGAGAGGACGTGAGTAATGCCCATTCTTCAGATTCAAGATTCCATTGTTTGAACAATGAAGACGAAAACATCCAGGGAGTTCACTACAGTTCCTACTGACTCATA----TCTTTTACAGTGTCTCTCAGACAAA-CCTTTTTAAGCTTTTTTTGACAAAAGGCAAATAAAACCTTTTATCCACTTTGAGCTAGGA--AGAGTTGAGATAC--AATTGGGTTAAGAATTGTC-----CTTTGCCAATCTTAGGTCATAAAAGAAAACTAGATGTGTTATATGTTTTAAGAAAAATTACATTCCTTTCTAGACTGCAGTTCATAAGTGAAAGAAAGACATTCTTAAACACTCGATCATTCACAGTCTTAATATATTTGTAATT
s HiC_scaffold_1 137935626 2883 + 233722169 AATATATTTCTTTAATCTGATTAACACCTGGCATTTCAAACTAAATACAGGAAGACATTTAATTTATATGAGATTTGTGTCTAGTAGGAACCAATACATTATGTTGTTATATTTACATGTAAATATAATTCCCATATTTGAAGATTATATAGACATAGGATCAGGACAAAAATGAGACAGCAATTGATTTCCAAGACAGTGTCCTCTCCCAAAATAATATTTTGCCAGCCTTGTTTTCAGTCAGTTGGATATACGGTTCCAATGAATAGTAATATTGGAGAATtaagagggaggagaaaaataCCTCAAGCTA-GTGGTAAAGGTGaccacatatttataaatatgaagtaAAACTCGTTACATATGCAAACAATATGACTGCCA------GATCAACAATTCTCAACAGCTTGCtgataaatgaaatagaagacCCC-----TAGGCTTAAACTAACTTTTACAGAATAAATGAGCATGTTTCTTGCTTCACCTGATATTTGCTATTG-GTTCATACAGTGTGGATGATATCACTGATGAAATAGCAATAGACTATATCAATGACTGAAAGCAACACAAATTGAGTACAAACAACATGA----AAAGTGTCTCCAGTTCAGTTAGTCAATAAagatcacagttttccagatcaTGCTTGAATTGCCACTATTAATCACACTGCCCACTTACAGCAGACAATATTGTGCAGCTGATGATTGATAATCATCTTGGGCATAATATCAGCTCTTCCATGAACCAAGAGGACTTGGGGCATGTATTTGAGATCTCACAGATATGTTAGAGTCCACAATTCAATACAGACTCCAATCGgtatcttttttttattagtattgaGTATGCTGGGAGAAAT-----CTAAAGAACAATTCTTCAGATTTCTTAGGTCATTTTGGAAATTCGTGTGAATTTATGACACATTGATCATGAACATAAAAGTTATTAGAAGCAATTGTTCTGTAATAAAAATTGAATGCACATAACATCGTTATCGCACCAACATCTGCCACTCATGCAGACATCATTCCGTAAACCCATCAACCTAACTCTATTTTCCCTTCTGATTGTATTAGGACCGCTTGCGGCTTGACAGTGATTTGAGTGACAGGCATCTGCCCTGGCACACAGCGATGCATA-------------------------CCCTccttgagaaatgtaaatttttaaa-ttgttttttattg---aaAAGAGTTATATGAGAGAGCA----ACGTTTTTGCCTTAAATCCTTGAAAAGTCAAAGATATTATAGTATCCAGCTTGCATAACAATTTtactaactttttaaatgtaCCTTTTGGTTTTGTAAtgaaaaagagcagaaattattT-AAAGCTCCAgac----------tatctat----------------ctacctatctatctatattcCCTATGGTTCAATGGA-AATGACAATGTTTAAGAAAAAGTATAGCATTTGGTACA--TTTA---AAGGTTAACATCTTTACATATGCAttcccagaaacagaaaaaaaattgtttttaaattttaaag----ctctATCCATGTTAGTTTTCTTATATGTCATACAGAACTGTAGTAAAATATCT-TTGTATAGTCCTTACAGAGCACAACACCATGTTAGATGTGTGGGGGGGACT--TGAGGACATTGCTTTTGATTTTAGAAGCAACTGCAGACATTCCCTCAATGGTA---CTCTTGTCAGAAGGTCCTCTGGCATTTGTTCAAACACTTG---------------------ATAGGAAACTTATAGGTTCAAAAGCAATGT--------TCTGTATTT--------GAAAATCTACTATTAGAGAAAAAAGTTTTCACATTTAGCCA----AATTCTATCTATCCTTACTTGCACAAAAGA---------------AATCC----TCCAAAGCCTACATAG----CACAATGAACTTAAG---------------ACAGAGAACC---------------------------------TACAGATTTATATACTTATGTGAAATGTTGTTTTGATATTTCAACAGAACCAGTTATTTCAGTTATCCATATGAACATCAACAGAAAATATATCACCAACATTAATCTTAataacatttttggaaaaatagaGTGACAATATCTTC-ATatacaaaaattacttttattagaataaattatttttctaattttg-------------------tcaaACACAAGTG---GAGAAAAGATGTGTA-TTTGGGT-----TTCTTTTAGTCCCAAATGGTGGTATCTTCACTCCGCCTTTTGCAGATGTAGTAA---------GTCATGTATGAAACATTATACACAACTTTAAAGCCCTAAATGAT--------------GTCCCTTGTCAATAAACTCACAATTTCTCTTCAATTGTATCAA---TTAAATTGGCTT-ATACTTTATGTGCTTATTTCTCAACC----AATTGATTTGTGAGGGAGAAGAATttccacaaaggaaaaaacaatgcaGACCAAATCCAACAGGCTTGAGACTAAGCTACACTAAAGAAG--ACCAAgttcttttgcccttttt------------------------------------gcctCAATTTACTAGCCTC-AAGACAAACTGGCC----TGaccatatttttgttttcctttggatgCTTGGCATTCTCTGAGTCAAAttattaaacaagaaaatatt-taatggatCACTAAATATTTTAGCTCAGCAAGAATA-GACTCTATAAATTACTCCAATTGAGtcattgctatttttattaaatgGAGAAGG-ATAAGTAGCCTCAGTTTTTCTGACTCAGAATCC---TATTTGAACAATAAAGGC-AAAACAACCAGAAGGCTTGCTAAAATGTCTA-TGAGTCATGtgttttttttaca---tttcatagGAAAATCCtgattatgttttttt-----aaaggcaaacaaAATCTCC--TTCATTTTGAATTAGAATGAGAATTGTAAGTCTGAAAAAAGTTAAGAACTATCCTCTTCTTTTCCAGAATtagataattaaaaa----tagatataCTATGTAtctgaaagaaaatt-cacagtTTTGTAGCTTGAACTGGATA---GAAACAAA-----TCTTAAAC-----ATCACTTCTGCtcttaaaatatgcataatt

a score=12987
s chr3           151355079 1129 + 160039680 ATTAACAAATTCACTTTTGTCTCCTTTTACACAATAT-TATTTTCTGGAAAGTGTTTTCA----AAATAAATTTGTTGAAGCAAATTATATGCTATGTTTTTGTGTTTATTTTTATTGAGGGTAATTATCACTCTCT-----GAAGTTTCCCATAGTTTGAGCCAATTTTAGGTTTACATAAGGAGAGTTCCCATGATGGCACAGAAAAAAA-AGGAAATATGATAACTTCTTGATGGAGTCATTATTAACAAAATTCAAACACCATAGTACAGAAGATGAAGCCTCTAAAACAAAGGGCTAATAACTATAA-----TCCACTCAGTTCCTTTAGATTTGTATAATAATCAGTTTTTTAATTAGTGTTGCTCATCCTATGATCACCCTACCCCCCCCCGACACACACACCCCTTTACAATAATCCCTCTTCAAAACTCAAAGGAAACCAAGCACAGGAAAATCACCT-TGTATAATGCACATTAAAAGATACCTCTTTACTAAAAAATG---------GCAAATTTATTGTCATGTATACCAAACTGA----------------------------TATTCTG--------ATCTCTTAG-ATAATGTTCTAA-------------------------AATT-----ATGAACAGTGACGAGGGTCCTAGAGAGATA---TTATAA---------CCATAGAAGAAGCATGGTTTACTAA----TAATTACAACTTCCCAATGCCAAAACCCATTACTATGTGAACTTCCCTCAAATAATTCTGTCACTGGGATATGTTT----TCATGTTAAAGAACAAATGCCAGTGGATAATTTGTTTTCTGTCAAATTTAATATTTTCATAATGAAAACAGCATATCACTATGAAATGAGATATATTTAGTCTGTAAAAATATTTATAAGCTAATT-TCATGGTAGTGTAT-----------------TCCTTTTAGATCTGAATAGAAATAAAT-----------------------------------------------TAGAAAGGACGTGTTGATACTCAGAATTTCAGAACATCAAGTGGCAGC-CAGGATATCCAGACAGAGGATTTTGAAGTC----------------------AAATAGCTCT----GATTTTACAAGTAGACTGCACTAAAGGG-CAGCTATTTCCCCGGGGTACGCATCAGTCTCTCTAAGCGCAGTATTGATGGGCCCTATACTTGATGTGGAGGAATAACTCTGTTAACTTCCCCA-GATGCTGTAGTTAAGGGCTTGAGCTAACTCTCCAATCAAAGTCATAGCCAATGTGAAATGC
s HiC_scaffold_1 137950738 1235 + 233722169 attaataaaat-----tttcttccctCTATGCAATAGATAGATTCTGGAAA---TTTTCATGCTAATTGAATTTATCTAATCAA----TGTGCCAA----------TGCTTTCTCTTAAGGGCAATGATGACCTTTTTACCAAAAATTGTGTAGAGTTTTAAATTAGTATTGTTTAAATCAAAGTAAATTCTCAAAATGGCATATTTGAATATCCTAAATATGACAAATAATTAGAGAAGAAAT----AACTAAATTCAAAAGTTGTAACTTGGAGTTTATAGTCCTACTGATACAGG---AAAAGCTTTATCTAGTTCAACTGAATGGGTGTTAATTTGTA--------AATTGCTAAAATAATGTT--TTGTCCTG------------CTTCACATGTCTTAC---CCCTTTTGCT----TCCAAATCCTGTActtgaa--aaaacaaatgaaggaaaATTATCTCTTTATAGTACATATCAA--TATTCTTTCTGTTCCAAGAATGTTTTTTCCTGCAAATATATAGTCACACAtgtgaaaataaaagtattttttaaaaaagataacaaaagtaTTCTAGCACTTACATCTCTGAACGTGATGTTTTAACCTATGAAAATTCTAAATTGGTGTGAATTTAAAAATGACCtctaaagaagaaaacagagtgataagattaTACAGTTAGTTTCTTTAGAAGAAACATGATCTGCTAAATAATAACTGCCACTTCCAAATgtcaaatttttttattgtataagATCCTCTCAAATGCTTCCAACATCAGAATAAATTAATAATCATATTAAAT------------TGAATAAGCT--TTTCTGTAGAATTCATTATTGTTACGCC-------------------------AGATATActcattcaataaaaatatttgcatgctAATTATCGTGAAAGTATATCTGAGTTTagataaaaatcatgaaaaatgttAATAGAAATATATGCACATTAATTATCATAAAAGTATCATATCTGGAGTTTCATAAAGACCATGAAAAATGTTTCCCTGCTCAGAATGTAGAAACATCCACTGGTAACTCATAATGTCCAGAGAACGGTTTTTGAAATTTCAGTTTATTAAGAGTTTCTCGAAACAACTCTTTTTGATTTGGCAAGCAGATTGCTTCAAAGGGACAGCTCTTTCCCTGGAGCTCACTTAAGTATCTGCAAGCAAGATCTCGATGGGTTCTATATTAGATATCTACTGATTATTCAGTTAGCTTCCCCAGGACACTGTAGTTAAGGGGCTACACTGACTTTCCATTCAAAGGCAGAACTAATATAGAATGC

a score=47636
s chr3           151357114 1750 + 160039680 TTTCCTTCAGTGGTCCTTTTGCTGCCACTCTGATATCTTTCGCAGTGCTATGAGAGATGCTTGAAAAAGAACTGAATCCTTACTGTCT-CAAACCTGAGTGTACCCACATCAGCTAAACATGAAGCTCATTCCTAG-ACCCAAAGAAATCCATCCCAAATCTAGAAATTTCCTGTGAGAGTCCA-GAAGAAGCAACTTCCTACATGAGACTC-CATGTAGGT-TCATATTTTTTATAACCATGA---------AGGATTGTTTTTGATAAAAGTGAATTTGGGTA-----------TGGCAATCCAAGAAGCAAGAACTTTTGTTTTCTGACTAAGAAATATACATTGTAA-TATATTTAAGGCTCCTGCTGTGTGACTTAAAACCCAG-------TTGCATTCTGTCCCTGACAGGCAGCATGGGTTTATATTTATTGAGCACCCCT--TCAGCCTAAACATATTCTACTGTGTAGATATTTGTCTGTGAACAAAATTTAATATTCCTTTCCATTTAAAAATATTTCCATGTTGGTAACATTCTT-CTTAAGTTGTAATGACTTTTTATGCTCAATATTATGTATTCTTA-AATTTTACTATTATGGAACACA-TGCTTCAATGCAATATCTTTTGTGATTATATCACATTACTTAGTGCAGGTGCGACACAATTTATTAAAGCATTTTTCTCTACTTGGACACTAGGTTATCATTTTAAGCCACTATATACCTTTTTATATATTGACTATATGTAGGAATTTCTTTTCAAATTTTATGTCCTGCTGTTCAGAGTCACCGAAGCATTGAAAGGTCCTCACAGCAGCGTGTATTTTATTCACGCTTCAGGTTTTGTCTCATGGATTCAGCTAACAAACACCAGATGCAATGCTATTCATGTTGACACATTCCATACTTCATGTGGAACCAGCAAGGTTCACACAGACATAAATGGGTCTCTACCACCAGGAACACTCACAACGTTAGAAATGATGA---------------ACATCTCACGGCTTTAAATA---AACAGACAATCACTCCCAAAAATAGCCTGCATTAATTGCTCACAGTTTAGAAGGATCAGAATAGAGGCTGTACCCATTTACTC---------------CTTCTTACCGTTGGCCTGGAGTCATTATTACAAGTGTCAGAACAAAGAGATGTTTTTATGTGGGATTTGTTAGCACAGTGTACTAAGAA-GCAGCTCTTCTAGAATCTCCAGAGTTCACCAAA---TTCGTAAATGGGTAATCCTGAAGAATGGTAACTGAATTTAATTTACATGTTTATCTTGCTGTTCAGAATGTTTCTTTGTGATTGT-CTGTGAATATTGT--------AGAGGTGTGAGCATGTTACTCTTACAGAGAAAATTG---AAGGAGGCTATTTCCATAAACCCAG-----TTAAAGGCAATGCGTTCAAATAACAGTGATACGTGTGCTCCT-----------------AAAATGCTAACTGCTTTTTCATACCTAATTATTAATCTTTGTTGGAATTACCAGCAATTCATTTATTGGCTTTTAAGAAAAAGTTAATTTCCTCGTGTGACAGTCTAAATGTCTAGACATACCCA------TGTCACAGAATCATATAGATTAATTTTCTTGTCTCGAGGCAATATTATTTGAAAAGACTGAGGCTGGTAATTATTTTCCATAAACCAAATGCTGACCTCATTTAATTGCCCTTATTTTGAGTGGTAGCACAGATCTCACTTCCATTGTCAGGTCATTATGTCTAGGCCATATGGATCTGTAAGAACCAAGGAAAGTAAATTACTTAACTTATATTAAGTAATTATTAAAATTTTTCTTAGA
s HiC_scaffold_1 137969772 1820 + 233722169 TTTCTACCTCTTGTTCTCCTGCCATTACTCTGACAGCTGGC-CAGTAAGAGAAGAGGTACCTGGAGGGTAGCTGGGTTACTTCTGTCTTCCAGGACAAGTCTACCTTGTGTTGCCTACAACCACGCTCACCCCAGGCACCTGAATAAGGCATTCCAAGACTTAAAGATTATCTGCACAAGACCATGATGTAGAAacgttttaaaagatatttatatatagttaTTAGCACTTTTGTGGCAATGGTTATTTGATAGGCCAACTTTgtgtaaaat---atttaagtaaacaaAAGTATTAGCAATCTTAAAAGCAAAGGCTTT-ACATACAGTCAAAGAAATGAACGTTCCAAATATAAGTAGAGCTTTTGTTATGCAGCTCAACATCCAGGGCTTAGCTGTATTCCAGAGATAAC------CACAATATTGCATTT-TTAAGTGCCCTTGGTCATTTT---CATATCCCACTCTATGTCTACTTTGTTTTAAGCAAAATATAGAacaccttttcatttttaaatatttt----------gcactTTCATTTCAGCAGCAATGGTTTCTTATAGTCAACAttgcatatttttttaaacataccaTTACAAAACACAGTGCGCCAGCCTAGTCAATTTTGCTATTTCATTGTGTTATTTTGTATAGGTATGccacaattt-ttaaagtattttcctcTATGTGGACATTATATTATCATGTTAAGCCACTGGATCCCTTTTTATATATTGGATGCAtgtagaaatttgtttttaaattttatatcctGCTGTTCTGAGGTACTGAAGCAATGAAAAATCCTTACAACAGCATGTATTTTATTCACGCTTCAGGATTTGTCTCATGTATTCAGCTAACAAACACCAAACGTAACACTATTCATCTTGACATATTCCATACTTCATGCAAAACTAGCAAAGTTCACAAAAATATAATTTGGCCTCAGCCATCAGGAAtactaacaaatttttaaaatacaatatatacataCTTATATATTTAACTGTTTTCCACACTTAATATACTACCACTCTTGAAAATATAATGCATTAATTTTTCACTCTTTAGAAGAATCAGAATAGATGTTTTaccaatttacttttttaaaccaatttattttttagctttGGCCTAAGACTGTTGTTCTAGTTGTCAGAACACAGAGAAATGATTTTTTGAGACTAGTTTGCACTGTGCCCCAAGAAGGCAGGAGTCCTGAGTTTTTAAATGTTCAACAAAGGCCCTTTAAATGAACACTCCTTAAGAgctataaataaaactaaattata-actaattttattataaaacttacttttatttaaaagtaacatGAAACTTACTTTTCCTAAAAAGAATGTATAAGCTACTTCTACAAAACAAATCGTCAAGAAAAGTCATTTCATTATGctcagaaattttaaagaaaatgtaatcaaATAATAGTTTTAGCTCTCCTCTTGATGCTGTCTTTGCTCAAAAATGTTGACCTTTACTTAGCAC--AAT-----gcttttgttgaaaatatttgcacttcattcattcacttcTATGGACAGTTTAACTTTCAAACGTGAAAATCAAAATGTATAGACATATTCATATTCTTATTAAAGAATCACATACATTACTTTTAATGTCTCTAGACAATACTTTTTGAAGGGACTTAGGCGtggaattatttttaacaaactaTACACTGACCTAATtt-actgtcattatttttaagagtaacAAAATTCCCACTTTCATTGTTATAAAATTACTTACAGGTTGTAAATGTctgcaaaaaaagaggaaatt----------atttatattaaataattatcaagaatttccttaga

a score=33236
s chr3           151365976 1342 + 160039680 TCTGTACTTCCTGGAAGCTTAAATGCATGGAAGAACGCT-GTCGCTCTCTGC--TGATAATTGCTGTCTTTC----ATTTCTA-GGAGATCGCATCGTTTGTTCGAAGGAAAGGAAGGGACAATATTTCCATGTAAACA--TAAATTATGGAGAATGTATCGGGTCTCTTGCTGAGGACA-TAGGCAAGTTCAGT---CGGGGAGGATGGTGGGCTTCCTGGTGCCCTCCAATGGGAACAACAGGCTTTTGTTGTTACTGCAGTTTTTCCACTTGAGAAAGACAAAGAAGCAGAAAATAGACACAAACAGGGATGTCTGTTTCCAACTTCGAGGTAATTGAGGGGTTGGCTCATTCTGCTGAGAGAGCACCAGAGGAAA-AAAATCCATTACTGGACTGGAGCAAAGAACCTAGGGAGAGGCCAGATTGCCAGAAGTATGGATCTCACACACAGAAAGCAAGCATGAGACAGG-CCCCCCACAGCTTAGGACAGAAGGGCTTCTTCCCTGCCCTGCAGGAGCCAGAAGTGAGACTGAGGATGCCGAACAGTCTGGCCTTTGAGGGGATTTC--GGCTTCCAGATGCCTTGCAGTACTGCCAGGCTGAATTATGTTAATTGAACCTCTTCCTACAGCAGGGTTATTCCAAAAGAGGTCTGCCAGGGTCCAGCTAAGTATGCATGCCGAGAAAGAGAGCACAGGACGCTGCCAAAAAATGTGGAGGGGGTCCACACACCTG-AGCCAACATGCattaattaattaattaattaTTGGAATAATGGTCTCAAAACAAGTTAAAACGTTTCTGCACTTTGAGAAGAGACAGTTTGCTCAGTCCTCATTGCAGTGCTCAGAGAGGGGTATGCCATGTAGCCAAATTTACTACTTAGGATCCTCTCCAATGACCCCTTGCCTTCTGCCAAGAACACCAATGAGGAGTACAGCTAAGTGCT---TTTTATGCAAGGTGACTGGGCTATTCTACACACTCTTGCCGAGCGGCAATGGACATGGAGTGCTTCACACTGCCATCAAGGGA-AGGACCAGGCTGTGGGAAGTTTATGTAAGAAGGGTCCACTGTGAAATAATCAAGAGCCAAGGTTTTTGTGTGATTGCCAACAGATGATGATAGACTAAGAATGGCTGAT-GGTGGGGGGCGGGGCTTGTGGTAGGGGGAGATGCACACATAGGAATATGGTTGGG-----AGCAATGCACACATAGGAA---TATGAGTCACAGCAATGGGTGAGAG--CAGACTGAGAATGGGAGAAAGGAGAAGAAATAAAATAGAAAATCAGGATTAAAAAAATCTGTTTCTCTGCAGGTTTTGGAAAGTATATTCTTCAATTAAATTCCTATATTTATGAG
s HiC_scaffold_1 137977422 1301 + 233722169 TCTCCTCTTTCCTGATGCCTAAAATCATACAGAAAAGATAGTTGCTTTCCACCATTATAACTGTGGCCTTGCTGTGATTTGTACAGAGA---AGCTATTTGTCTAGTATAAAGGAAATGTTCATATTCAGTTGCAATTTGTTAGAATTTGGGGAATAT-TGGGGCCTATTACGAAGAAGAGTGAAAAAGTTTAGCAACCGAGAGCTACGGAAGGCTTCCTGGTGTCTTCCACTAGCAGCTCCAGGTTTTTGCTGTTATTGCAGTTTTTCCACTTGAGGAAAAcaaaggagcagagag-agaggagagcaggGATGTTTGTTTCTGACTTCAGAGTAATTGAGGG-CTGGCTCATTGTGCTGAGAGTGcaccaaggaaaagaaaacccGTTACTAGACAGGGGCAAAGAACCCAGGGAGAGGCCAGATTGCC-GAAGTGTGGATCTCA-GTACTGAAAGCAGACATGAGACAGGGCCTCCTGCTGCTTTGGACAGAAGGGCTCTTCCCCTGCCCTGCACTGCTCAGAAGT-ACACTGCGGACGTTTAACAGTCTGGACTTTGGGGGAATTTTCAGCTTTCCAGATGCTATTTAATGCTGCCAGGCTGCATTATGTTAATTAAACCCTTTCCCACAATGTGGTTATTTCACAAGAGGCCAACTAGTGTCCATCAAAGTGTACCTGcccagaaa-agagaagaaggttCTGCCAAATGA--CCAAAGGGAGCTGGACACCAGCAGCCAGGGT-------------------TCTGTGGGAGAGAAATGTAAGCAC-----GAAACATTTGTGCGTTCCAGT--GGGGCAGCAGACCCAGTCTCTGTGAAAGCCCTGTGAAGGGGACACGTCTTGGAGCCATACTTACTTGTAAGTATTGTTTCAAATGAGCCCAAGTCCCCTGCCAAGGA-ACCAGTGGAGAGAGTGGCTGGATGCTTTATTTTCTGCAGAGCTGCTTTGCCTTTGCACCCACTCCTCCTTAGCGGTGTTTGACATGGGAAGTTTCACACTAGTGCtgagaaatagaacaaaacccagaaaagcTGGGGTAAGAC-TATCCCCTGTCTTCTACACACAACTACAGGT-------GGACGG-----AGATGATGATAGAT----GAGGGCAGATAGGTAGACAGTGTGACTGATGATAAATAGATTGGT-----TTTGGAAATAGTTAAGACTAAAGGAAAGTAAACAAGTGAACAGCATGAATTATGATAGTGAGTCAAAAGTAATatataaaagaggagaaaagaaaggagatgaAATGG-------------GGAAAATCTTCCCTTTTAAACGTTAC-TATCATATATTATTCAATTTAAATTCTGTCCTTACGGG

a score=7339
s chr3           151368384 231 + 160039680 gtTTGATA-CAAGAATGTAAGACCACTGTTCTGCCTCTGGTACGCCTCGCAGGGAGAACAATCAGAACTTTTCCCTCTGAATAAGGAGACTGAAATTGTGTCCCTGTGCAAGAGACTATGTGGGAAAATGCAGAAAATGTTTGGCCTTCAGAGATTGCTCAAACAAAATTAGGACCATGTGAGTTCGTATAA----CACTGGGACAGTAGCCATAAATTTAAATGGCTGAGCATTA
s HiC_scaffold_1 137979776 220 + 233722169 GTTTGATGTCAGGAGTGCAATCATATTGTCCTTTCACTGATCAAAATCCCAAAGAGATCAATCAAAACTTTACTT----------GAGAATGAAATTGTGTCGCAGTACAGGAGAAAATGTGGGCAAACACAGCAGCTGTTTGGTCATCATTGATTGCTCAAAC------AGGAGCATCTGAGCCCGTTTCACTCCCACAGGGATGGTGACCTTAAATTCAGGCAGTAGAACATCA

a score=61037
s chr3           151371585 2831 + 160039680 CTATAAAACATTACAGAACTATAAGCTAGACCCAAATGATCCACAGAAAAGAATACTCTTTCTGAAT-----TGCTTCCTTGACAATAGTGGGCAAGGCCTCTCCTTACTAATCCACAAATTCTTTTAAATTCCCCAACTGCTTTGCCAAAAACCCTAGAAATCCCTCAGATAAACAAATGTAATTATGTTTCCAGC--TTCATTATAAAACAAAATTCCTATCCAAATCAATAATTTCCCAGAAAATATTTACATTTGACTCTTTCTTTCAGGT----------------GTGCATTGTC------------AGAATTTAT-------ATTCTGTATTATCCCGTTTTCTAA----GATTGAGTTTGATTCCTACTCCCACGATGCACACAAGCACAGTCTAGCTATAAAATACCACACCGGGGAAAGGGTGCATCAAGTG-CGAGTGATTGGAAAGAT--GGCTCTGAAATGGAACATAATTATTCACTAATAATCATAGAAA-TGAATTGCAGACACCCAACGCTGCTCTATGCTGCACCAAGGCTTTCC-CTCCATTAAAACGCTCACATAGTAATATAAGCAAGGAATATAG-GTTTTATTAGTTCACATTTTAATATGACATTTATATTCCATTTTCTATTTCACTAGCTGTCATGTATATTTCTATTGTTTCTATATTCCTCCTTTTGCCAATAGTGTTTTTCTTAATAAGA-TTTTTTTATAAAGTCAATTCTAAAGTGTTTTGATGTTCTATATAATCAATTTTCCCCAACTCTGTAATGATTGCTTCATAACATTCTATGGCTGGTTTTTATTGCCTTTGTTTTCATTTATAAAACTATTATCAGAATTGGAAATACAAATGCAAGTATACAGTCTTCCATATTACTGCAAAGATTTAAATTCAGAAGTTTCATGCAGCAGTTTGCAGAAGCATGTCGAT----AGAGCCAAAGGATAGTGATTTTTTTTCTGATGGAATATTGTTTTGATAAAGCAAACTTATAAATGGTTTACTGAAAGGCTGTTGTGATCATGTTTCTGGTTAATAATCAGGGTTGTTAAAGTCTACAAACATCATTGCATTCCAGTACAGCTAGCCAATAAACTCCTGTGTCTAATGATATTCCTAAATCATTTTTTAATAAATAAGACAAAATAAATCAACAAACTACTCTAGTATCTGGTAT-TTTGTTAGATGAGTTTTCATTAAGAGACAATTGAATATAAAACAAATAATGTTTGCATTAAAGTAAAAAGTTTTAAACTCTTAAGTGACTTCTTCATTAATGGTCCATCATTCAACATAGTAAAAAAAATAC------------------------TCATACACACACACTCATGTTGAAAATTGAAATACGAAATGTTTGAAAAACATCATTATGCAG--AAAAGAATACATTATAATCAGAACTATTCTTAGGAG-------------------GACCTAGTGTGCAGAA--CTAAACATTtggctcttaattctgttagattcaatccttcctttacataattacttcttgttatgcca-atctagtatcctgatttaaagttcatggttaatgtcatcttttaatcctagtttaaatggatagaaagagaagtgagtcatagtttaagg--taatgtgaaatgggaacatgatgtagttatggccagctctatacattcaatatgtgcgtgttcacacttgactgcagaagataccatgatgaaaccag----ggctcccttttgtaagccattgtgaaaatgctacacattctaccatataaatgtgaattagtctgtgttttaacaaagctgcctc-aatccagaaaaacataaaaaccattaatgtcgagatttagagaaat---caatctttggtaaagttcttaacagagttcaatcttg----gcttagttgta-atggtatttacatctctataaaaa-ctttgtttactaaagccagatacagagcatggcattttattaaggttgattacttataaacaaacttgtcactaacacggatgctgagtagaatactaggaagtcactcagaatatctctccatcactgtaaagatattcctacactca----cagagcatgtagcaac-tgtgac-ATTTCCTAGTACACAACTTCAGTACCCTACATAACTTGGGAATCAGTGAACTAATTCATTTCCCAAATATT----GCATATTTAATTGAGAACCATT--GCTCTAAATAAACCATA-----------------------CAGTTGTTTCTTG----TAGTCTTaaatatcatagactggataatttccagaaaataagcaaatgtatat-gtaatat--gaaaaatgtggagatagagttcaaaatgcttcacacagcaaactccttgttgatgacaaggatccttccaagttttgtggtagtgcaaagtgttacctagcaaggcagagaaagcttacacggagtcctctttctctgcttaataaatc-cactagtgcaattataggactc---tacctttataatttggtctagtcttagtttactctcagggacTATATGTATATATACATATACATATCACTCATGTAATATTTGAATATTTAAT-TTCTAATAAATGAAACATCTACTCTGTCCAAAGTACTACTGTGATCAACTGTGAAAATTTATAAAAACTGATGTAGAAGAAAATCCCAGAATCTTCCCATCTCCCCTTTGATTGTAGATTATGAGCCTTG-----AGTTGAGAGAAGCTTCTATGTTAACATTCCATTGTCTCTGACTC-------------------------CACATACAAAGCATCTCTCATATTTAAAAATGT-TTAGAAGACACCAGACC------------TGTGGATTTGTGTGTAACCATAAATCTGAATTTTAGAGTCACTTTTGCCCTTCAACTGTGAAACTTTATTAAGAAGGGTAAA-----CATGAAACTAGCTGAACTAACATG--------TGTTCCATGTGGTGTTGTAGGTACTAGAGCATGTA
s HiC_scaffold_1 137981987 2888 + 233722169 CTATCAAA-ACTACAGAATAATAAGCT-GTCCCCAGTGAGCCATGACAATGAATATCCTCTTTAAATAACATTACGCTCTTGACATTATTTT-TAAGGCTTCC----------------------TTAAAATCCAAAATTTCTTTGTAAGGCACTCTAGgtgtttttcaaatgaagaaaaaaatctttcttttaaaaaattcatcctTAAACC---------TTTAACACTgtaatttacaaaataat-tcaaaatctcAAATTCTATTCCAAGTCCTTGAAACAGGCTGTGTACACTGCTTGTACTGATTGTAAAATGTATGCCTAGTATTCTATGATATTTTGTCTTCTAATTCCAAAAGAGCTCAATCCCCACTCCCTAA---CACATATGCATAGTTTTGCTGTAG--TGCCTTATTGGAGAAAGGGCACATCAAATAACAAGTACTTGGAAAGATAAGGTTCTGAAATGGAATATAATTATTCATTAATAATCATAGAAAATGAATCTGAGGCATGCAGTTCATCTCTATGCCATTTCAAGATTTTTCTCTCCATTAGGGGACTCATACAGTAATATCAACAAGGAATGCTGCATTTTATTAGTTCACATTTTAATATGACATTTATATTCCATTTTCTATTTCACTAGCTGTCATGTATATTCTTATTGTTTTCCTATTCCTCCTTTTGCCAATAGTGTTTTTCTTGATaggattttttttataaagtcaattctaaaatgttttgatGTTC-GTATAATCAATTTTCCACAGTTCTGTAATGATTACTTCATAGCATTCTGTGGTTTG-TTTTAttgcctttgttttcatttagaaaGCTATCATCAGAATTGCAAGTGTAGATGCAAGTGTAGAGTTTCCTATATCattgtaaagatttaaattcagaactTTTGCAGTGTAGTTTGTAAAACCCTGACTATGCAGAGAGTTAGAAGTTGGTGA----GTTTCTAATGGAGTGTTGTT---GCAAAGCACGAGCACAAAAAGTTAATTGAAGGGCC-TAGTGATCATGTTTCTCA-TGATAAACA-GGTTGTTAAAGTCTCCTAGTTTCATTATTGTCCAGTGTAACTAGTCAATAAACCAATGTGGGTGATga------taaatta--tctgaaaaattaaggaaaaacaaactgaTAAATTACTCCCGTATTTAGTATAattactaatttaatttttattaaaagacaa-TAAATGCAAGGCAGATAGTATGTACATTAA---------TTT-----CCTTAATTGACTTCCTGAGTAACAGCCCATCATTAAATACTGTCATAGATAGACAATGCCTCAAACACACGTACACAaccacacacaagcacacacatgagaatttgggACAGGAAGAgttgaaaataaattatactgCAGTAAAACAAATATATCTCATGCAGAATTATTCCCCAAAATTTTCTTATCCAGAGCCATAATCTTGGGTACAAAATTCTAGGCTACTAGTTCATGATTACATTATAGTCAATCCCTCctttatatagtaaatattt-ttgtgacatttttattCTCCTAATATTAAATTAA-----GATAATACTTACCAATACTTGTTTTACAATATATATC---AGCTTAACTAGAATTTGAAGAATAATG----ATaaagaaattaagttttta----aaattctgaatattcAATATGTAA--ATTTAGACATGATTTTGCTAGTAACCATGTTGGCATATGTATATACTTGCTTTTGTAAGC------AGCAACCCTGAATATCACA-AATACAAACATAAATTAATTCATCTTATAGCA---TTGCCTCAAAACAAGAGAAATGTAATCTTC-TTgatattttgactttgagaaatgGGCAACTCTGGGTAAAGTTATTAACAAAAGAAAGTATTATGTTTCTTAGATTTGCATAGTATTTACGTGTCCTGAAACATCTGTGTGCATTGAAGCAAGATGCAAAATATTG-ATTTCATTATACTCAGTTATTTATAAACATATCTTTCTCT-ACATGAATGAAAAATGCCACATTAGAACATCAAGCAGAATGGA-ATCAATCCCTGTAGA-AGACTTCCACACACAGCTTCAGAGCACATAGATATGGGTGGCAATTGCCCATTTAGTAACAGCAGTGTCCAGCATGAT-----AACCAACTAGCCCAACACATTGCTAAGTGTGGGTAGTGCATCTAGCGGTGAAACACTCAACTCTAAATAAACCACACTTGTTCTGTTTGCTACTGCCTTCATCTGTTTTCTATTACTATTACTTAATAGCATATACAGGGTAACTTACAGGA---AAGTAAATTTATTTCTTGATATCCCAAGGATGGAAAGTTCATGGTCAAGTTTCTGCTGCTAGCGAGAGCCTTCTTGCTGATGAGGACATGGCAGAGTCCCA-AGTGGTGCTGAGCATCTGATGGTGAGATAGAGCAAGCTCTCCTGG---------TCTCTA------AGATCTCCCTCATGCAATCAGGGACCACACACACCCTCACAACCTCACTGAATATTAATTACCTCCCAAAGGCCGCACCTCCAAATAC-----CATA------ACCTAAGACTTTAGGGATCAATATTCCAACATATGAAATGT-TATTATGGCCAAAGCATTACTCTAAACAATT-------------AAAATTGCTGTAAGAAGAATGGGTTAtactttcttgtc------ttgtttttagtTTAAGAGCCTTGGTTCTGATGGAGAGAAGCTTTGGTGT--AGATTCTGCTTTCTTTGatttcaggaagctgagggatCACTAGCAACAGGCACAAATCGTagtttatcttttgatttttctcagaGGGCAACTAGCCATGTAAGGGGTTTATGGGCTTATGTCTAATCACAAAACAGGAGTCTGAAGATACTCTTATCCTTTAACTGTGTGATTTCAATAACAAGAGCTAAGACTTCAAGGGGCTA--TAGACTACTATGCCAAGCACTGCTCTAAACTGTGCTATAGATATTAACACATGTA

a score=9427
s chr3           151375543 1100 + 160039680 TTGCTATTATTGCTAAGTAAATAAATCACAAATGTTTTGTGTGTGTTATATATTTAGTAA-AATGCTTTTGTTTTAATTCCCTCGTTCTGACACGATTGCTCTGAAATATCTATCTGTTTATCCTCTAGTGCCCCAAGTTCTATGGCAATAATTTCAATCACTGTTGGTTTC----------CAATGCAGTTTGTGATTCTCAGACACACTATATC----TAATGAGGCCCTGGAGCAACTATAGT-------TGAACAAGTCTACA-GATTCAATGGAATCATCCCTTTCTAATTCCTGAGTTACTATTTCCTACATACTAATAATGGAAATCAAATTATTTACTAATAATCTGGCATTTAAAAAATAGCTTCTCCACTACTATAGAGTCCCATATC-AAAGATGAATGTTTCTTCTTTGATAATTTCCTAAATTTTCCAAGTTAGGAAAGAGGAAAGAAAAAGAAAGAAAGAAGTAGGCTACCTTTGTGAGAAGAATAACAATAAACTTAAGTGTCTTGGTCTCTTGATACCACTGCAACAAGAATTCTGTAAGCCAGGAAATGTATACAAAATAGAAATGTACATAGATAATTAATCTGGACACTGAGAAGTCTAGGG-------------------TTGacgctgtatttg---------------gaaaaaagcacatggctaacaaaa------atcgagtatttatttgttatcaggcctgtccccaatgtgacattagtcccttcatgaggaaaaagcatacgtgagcctact-ccatctcacaggtctcactcagcactgctacactgggctttgaattagtaacatatctacgtagaagctttggaagcatattcaaatcctagcaCTAGAAGTTCCAAAACCATCTC--CTTCAGAGGTATCCTATGACAACCCAAACTGGAAGCACTCAAGAGCTCATGCAATATTCATTGACTCATTAAATCAGCATGTGTGTGTAAAGGTTTACCTGTGTTACGGTGATATATCAGTGTGGGATGAGGTGCTGTGCAGCTGCTATTCATACCGTGTCCC-TGCCATGCATT----TGCTTAGAAACAGGGGAGATTTGCAAGAGCAACCCAGTTCTACTATAAAATATGCATGTAAAACGAAAGAGAAAGACTGGGCTAATTCATTAT
s HiC_scaffold_1 137989126 1031 + 233722169 TTGTTAGTGTTGTGAAATGAGTGAATAAGAAA-GTTATATGTA----ATTGATTTGATAGCAATGGCATGGCTTAAATTTA-GCATATTGATACAGCTGCTCTGGA-------------TATGCTCTTCTGG---AAGTTCT-------CACCATCTACCATTGTTAGGTTCTCCCCAGGATCAA--CAGTCTGTGTGTTACTACCACAACAAATCCGAATTATAATGCCACATAGCCATTTGAATGTCCaagtaaattattataaataattccaGAGCATCATTCAT-----AATGCTGAATCACCATTTacta-atatttaaaatggaaattaaactgTTTAATGGCCTTCTTGCATTTTAAACTTAGTTTTCTCACTCTGATAAAGTTCTTTATTTGGAGA-----------------ATAAGTT-----ATTTTCCAAGTTTAGAAAGA-------------AATACAACATGAACCTAc---------aagaagaacaa-aattttaaatcttaatgTTTCATGCTCCTATGACAA-AATAACTC---ACACTGGGAAATttataatgaacagaaatttGTTTAGTCAAAGATTCTG-ACTTTCAGAAGTACAAGAAAGAATGAGGGGCATCTCATTGAGGATCTTCTTGCTATGTCACCACATCGCAAAAAG-GTTTGAGTAGCAAAAGAAGCAACAGAGGA------------CATGTCTGTCTTTGAT---------------TCATAAAGGAAAATATCTCTTGAACTAATTATCTTTTCAAGGCCCTGCCTCTCAACTGTTGCATTGTGAGT-GACTTTATAACACAT-------AAGTCTTAGGAAACACATTCAAGCCAAAGCACTGAA-----CAAATTTCTTTCATCTATATAATTTTCAGATGATAACTAAAACAGTAAACATTCAGAAGTGTGTAAAATATGCATTACTTTCTTAAATTGGTATGCATTTGTAAAGTTTACCTTTCCTTGCAGTGATGTATCATCATGAAACAATGCTGTATGTAGCTACTACATTGATTGTAACCCATGGCCTGCATTTTAATGCTTTATAAAACTCAATATC-------ACAAACCAACT-TAATATAAGATATGTATATAAGGC-----AGTAAGCTGaagataattaaatat

a score=42848
s chr3           151378366 3592 + 160039680 TTTGGGTATTTCC---AAACATATTTTGAGAGTAA-AAGAAGATAGAAATGTC---ATTTTTTGGTTTTGGGGCTGTGGCTAGT-TATAGCTTTTACCTTTTTTTATAAGAATGGGATATATAACATTAGACATTTATTCAGGCCTGTATCCCAGCAGGGAGACTTGGAGATGACATTAGCCATGGGC-TTCTGCTGA-----CAGGAAGCCCCCTCTGTATCTTTATTCACAT---GAGCC--TCTCCCCTCGTTAGAGATCTACTAAAGTGTGTGCATCTGCTCTCCTTTCCAACTTGTTTTCACCACTTTGCTTCAAAAGCATATCCTAAAATCAAAGAAAAC----CTATTCATA------ATTATCTCTACAGTGAAGAGGTGATACTGTATCCACA-AGAGGCTTCTGGCCTCCTCTCCTGCACCTCTAGGGCTGCATGTAGACTGTCCCTTAGTTTTCAGTATATTTTCT--AATAAGCGTCCATGTCAACCAAATCCTGCTCATTTAATACATATTTTATTAGATATTTGAATAGTGAACCAAGTCATTATGTGCTGA---------ATGAAACAATATCCAAAAATATTTCACCATT------------------------------------GCATTCAAACTTTCTGCCA---------AATTTATATTTAGCAAAAA------CGATTaaaaaatacatgaaa---------------aaaacaaaa----aggcaacaaaaaaacaacaacaaaaaaaaCCTTTCCCAAATTTACAGCTAAGTAGTATTGTAATAGCAAGAACTTTCTAAGAATTTCTGGCTACATTCTTTCCAAGAAATCAGAAAGATTCTT---TCAATGTATTTTTATTTTCAAAGAGAAAATCAAAGAACTTTTTGAAAATATGGAACAGAGCAATAAAATGTTTATAATTTTCAATATCCA--CACATGCATGTCGACACTGGGACAAATACTAATCTCTGCTGTATCTCATGAGAGCTATTTTTGTTGATAATACTAAGAAAATA--------TATTTCACAGTGTTGCGCAGAG-----------CTGTGTCA--------------------------ATTCATGT-----ATAGGGTAC----------TATGCATAATTGCTC--------TCTTAATATCCATCACA--------------------TGAGCACTGACATGATAGAGATATAAAC---TCTCCATCACAGATATAGAATTATGGGACTTCTATAGCAGTTTTAGAAACTGTTGCATATAGCAGATATGAACATGAATATAATTGTCTCTTAAGTTCTGTGGAAAATATATTTCAGGACCCTCAGAATATCAAGA-CCAAGAATTCTCCTCTCCTTTACACCAAATGACGAATTACTTACTTATTTTTTGAACACGTCTTCTCTTGAACACATCTTCTATGCTTTTGTGTTTGAAGTATTTGTGTTTATTTATGGAGAGCAATTTAATTGATTTTCAATACAAATACTT---CTATTGTGTTGCTTAG----AATG------------TCTGCATATATAATTTCCAAATATCTTTATCTGTTATTCAATGTAT---ATGTAATG----TAAAATCTATGCATACAGAAGAAAGACATATGCACATGCTGTacacacacacacacacacacacacacacatcacacatcacatacacacaatcacatacaGGAGATGGGGTATATCTCATTTAAAATATTGATTTTCAAGATTACATGGCAGAAAGTATTCA----TGCATTTTCCCCTAGGAGAATAAATATGTCCTACTAATTTCTGTTCTTTTGCTCTAGACTGGACAATATGGGGACATATCTCAACTTTATGAAATAGAGGTCACCATGGGGAGATCCCTCCTGCAGTGTATCCATAAGAAGGTCTGGAATAGCTGAGGGTGACGCTCCAATGTCCAGAGCTGATTTCCCTGGAGAAGGCATTCTGGATATGAAGTTTCTCTGAAACTCACA-TCAATAGCTGAGGGC--AGGAGGTCATCATTAAGCACCCTGTG-TCCATTCTTCAAGTGAACTCCATATAGTGACAGCTATATTTAACCTGGATGTTCTTTCTGCAGCCATCGGGGCTTCTTATTACTTGAAAATGGAATCCAGGGAACTCTTGGATGTGATTTAATAACTGAAGGGATTTCATATT--TCTCTGTTGTTGCCTTATGAATGCACATTTAGAAAAAAGGTTGCTTGTGTGAGTCTAGGAGACATTCCTGGTAGCGAGACACATTTAAGCACGTGCTTACTGTGGTCGACAACGAGAAGAAAATGTACACTG------CCCTCAG--TTCTAACCTTGAAGAAAATTAAACAGGAAAAGGAAGATTTTTTTTCTCCCATTTATCTTTTTGATGGAAATTTTAAGCCCCTACTTCTCCTCTCCTAAATCCAAATTTG---TATTTTGGAAATATACACAATTTGCAAATATAAAGCATTTTCAATCTAGTAAAAA------ACAAACCTCTTATTGTCTAATTATACATTTACTTGC------ACTGGGATGAAAGGGGATGTCTTCTGTCAAGAACATTTTAAGAATGA--TCAGTACATTATGTGCACACTCGTACTGAAAGATAGAAACCAGTAGGCATTATTGTAATTTCTAAGCTTACAAAAAAGAGAGACTGAAGACCTAAAAGTAATGCTTATTCTAAT----CTGAGTAGAAAGGAATTTCTCCAGTTGGGTGGATTTCTGAATGTCACTGTTTGCACTGCAGATTCC---------CTGTTCCACCCTTCACAACTATGTTGACTGACTGATAGTTCTGTTTTGTATTTTTTTTTACAAGTCAGGCTTTCTGAC--AGTGATCCATTAAGATAAGGTATGTTCTTTCAG----CTTCCTGAGATGCAGTCCATAGCAGCTGCCCTTTTCA-GTTTGTTGT---------CTGAGGTAACTGTACTCT------------------GGGGGCAGTATAGCTTAAGCAAA----ATGCCTGACTTAGCCACACAGGAACTTTCTATAGTCAGATTTGTGTCTATCAAGTGCCAAGTGCAGTCATC---ATGGTTTCCATGTTGCTTCTTGGAAAGCTGTATTGGAATGCTGTGAACATCTTTATCCACGAAAATGAGCTAATTTTTAAGATTTGAGGAAGTGCTCATAAGGCTGTAGGAAGCCAC---------------TTTCTGTACCAAAACAGCCATCTCTACTACACTGTGGAGAACATCTCCAAAACTAAAGCAAATCTGCCTC-CCAAAGATCTCTAACATCTATAC---ATCTTACTCCCTTCACTCCACCCTGAGATACTGAATGCCACAGT--------AAGTATAGTTTCTTGCTCCCCTGTTAT---------TGTTTTTGAGAATTTAAAAAAATTCATAAAGGATGTGATTAGTTTTCAAAGCCATGGAGTTTT--CATATTTAGTAGAAA---ACATAATATAAACTATTAACTTTAAACCATGCTGGGCAACATCTATGAAACCTGGCATTCTGAGCCAAA---------------CTATCCAG-------------AGAGTATCA-----CAAG-------------------------------------------------------GCATTAAAATTAATACTGTATTTAATTGATCAGTTAAAATTAATCCTAATTTTGAGTATA-----TGAGAACACCATCTTCGTCTCAATAACCCCCCCCCATCCTGGTGCCTTTTGTTACGTGTGAACAATGCAGGTGCTTAAAACACATTAGGAAAG-AAACGGATGAAATAAGTTCTGAATGCTTTGATAGCAGTCACAGGCAGAAAGAACCACGTGATTGTAATACAGGAGAGAA--CACTATTGGAAATTGAGAAGCCAGGTGACTAGACTACataaaaaatattc---tttttaaatatttttaCTGTAGACACACAGAAATCTAAGTGAATCCTTTA
s HiC_scaffold_1 137990582 3756 + 233722169 TTTAGATATTTGCTTAAAAAAAGTTCagaagacaataggaaaatagaaataaccAAAGCACACCGTTTTAGGACCATTGCTAGAACACAACTCTCAC----TTTTGTAAAACTCAGGTTTTGAACATAAAACATTTGTGTAGCTTTGTGTCCTGGCAGGCAGACATGGGGTGAACTCTAACTCTGGATGTTCTGCTGAGCTGACTGAAATTCTCccatttcttctttgtcatgTTGTGAGCCATTTTCCCATTGTTGGTGTTCTCCAAAAGCATTTACATCTGCTCACAtt--caatttgttttctcttcttactTCCAAATG--TCTTCTGTGAGCCAAAAAAACAACTCTCTTCGTATCAGCAATTA-CAGTACAGTGAATACTAGCCACTGTGGCCTTGCAAAGGGTTCCAAGCTCCTGACACATCTTTCAAGAACTGTAGGCATATTTGCCATCATCTTATAGTGTATTTTCTTCACAGAACATCTGGTTTAATGAGTTcttgcttatttaataaattctctGATGGATA--------ATGAACTGAATCACTATATGAAGAGAAAGTATTATGTCAGTAGATACAGAAGTGTGCTACAATTCAATaccattcattttctcttttaaaaaatttgagaggATTTAAAACTTTGGCAACTGATGTGCAAATTGTACCTAACTAGGAATATGACAATTATATACTGTTTGAAACTCTCTATATGATGGATAGCTGGACTTtaaacaccacaaaaaaaaaaaaaaaaaaag--------------gtagatcaGTAG---------AGAAGGAATTTTTTGAG--TTTCAT----CATTCTTTCTGGGAAATGGGAAATATGCTCAGCTCAACtttcttttattc----------aattttataa--ttttgaaaagatggaaca-agaaggaaaatgattaaaaatgtggAACAGCAGTCATTTTAAGTTCAATGACGTTAAAAGAGCTAAACACCTCTGTGTCTCA---GATGCCTCTTCATTCATAAAACATTGAAACTGATGACAACCATTCCACAGCGCTGCAGGGAAAACCAAATAATTTGTGTAAGGTGCTTTGTATGTTCTGAGTCTGACATCTATGTGTGCCATTGGGTAAATTATGAGTGTATGTGCTATTAGTCAAATTGTGTACTAATGCCTACAAcagtttaatttttctctgtttttgctcATCGTCA--ATAGAGATCCTGATGATTTTCCAACCccaaaata-aatgacataaattCAGAAACAATTCTA-----------ATATCACAAATGTAAACATATGGGTCAGTCCATGGTA---TCTGTGAATGACTGCTTTCAAGGCCTCCAGAATACCAAAATCCAAGGATGCTTGGTCCCtcta------------aaatatttgcttat-----aaaCACATATCCACTTTAAGTCATCT------CTCGATTGCTTATAATATCT--------------AGTAGAATGTAAAcgat-----atataaatatttgttatgcTGTATTACTTAGGGGAAATGACATGAAAAGATTCTGTGTCTGTTCAGTACAAATGCCATGGCGTTTAGCTAAATGTTTCAAATCTGCTTCTGCTTAGATCTATGCATCCAGAA-------------------------CCCATGGACCCAAGACTAACTGTAAATCG-GTATAACAGACCCATAATGA-------------------agccttttaaaaagattttctatCAGGATTACACGACATGAGGCACGTAGGGGTACTTTTTTTccaattaacaaatatttacccttatatttttttctttttctctctagaCTGAAAAATTTGAAGACATATTTCAACTTTATGAAATAGAGGTCACCACTGGGAGAGCCTAAGTGGAGTGTATCTCAAAGCTGGCCCTATCTAGCTGAGGGCACAGTTCCCACGTCCAGCACTGATTTCCCCAGGGCAGGCTTATGAGATATGAAGTTTCACTCTAATTCACACCCAATAGCAAAGGGCAGAGAGGGTCACCATTAACCACCATGTGTTCCATTCTTCAGGTGAGCTCTTTATAGAGACAGCTATATTTAACCTGGGTGCTCTTTCTATGTCCACCAGGGATTCATATTAGTTGAAAATAGAAACCAGGGAACTCTTGGATATAACctaataactgaagaaatttcacatttctctctgttgtttgcTTATATAGCCACAGTT-GGGGGAAGATTGCTCATGGGAGTCAAGAAGTAATTCCTGATCACCAG---------GATAACTGCTTATTGCAGT-GAGGAAAAGGATGAGATAGATACCAGATTGCTCCTCAGAAGTCAATTCTTGAACCAAGTTAC----------TAAGATATTGTGTCACA----------TTTGATGGTGCTTTTAAA-------GGTGATTTTTCTAAAACCAAGTTTAATTTagtttagtga------------------aaaaaaaactcTTACTTTAGTAGAAATTTTCTTCAGAATTTATCTAgatgatttgtatttttattttcttatttactggCAGG---------------TGGGAATTACATTTGCTGATTGAATTCATTTGACTTTGTG---------------GTATGTATATTAGTAGAAATT----TCAATTTAAagcttacagatgag-gaaattgcaGGTCTGTAAGGTATTC-TATTCAAGTAGAGCCAAGAACAAAGGAGGAATTTTAACTCGattcttctctgcttcattatgtatgtttttaaaactacACTATGCTGCTATTCCACTTGACATGACTACTTTGAGTGA-----------ATTATGCCTTTTGTTTCCCAAAGTGGTTGTTTTGACAAAGTGGT-CAGTAAGGTAGGGCA--TTCTTTCAGATCCCTTTTTGTAGCTCAG-CCATTG----TGCTTTTTTgatgttttctgtttccttttgttaaaGTATCATTTCTCTGCTTCATCTTCTGGATGAGGAGATGGTATTGTTTAAGCAAATGTGGTAATTGAATTATGAGTAAAAGA--TTTTTACAGTCATATGCATAGCTACCAACTGTCAATTACAG-CATTGAGATAACTTCCATGGTGTTTTGGGGAAATCAGTATTAGAAAGTATCACCCATCTCTATTCCaaaatat---ctaattttta--ttttagcaaaatattCTAAAGTATATTAAGAGCCACTTCAAAAATAATAAGTTCCTGAACTCAAACAGCTGCCTCTTGTCAAAGGGGGAGTACCATCATGAATTTCGGTAAAATATGCCACTTTGAAGTTCAGTAGTATATGTACCAAGGCCTATTCCCACTGAGAAAGCCTGAGACATGAAATACCCTACTAATAAGAAAAACATAGTGTGTGGTTCTCTTGTTATATTAAATTgagtttttgagattttttaaatgct-ataatTGATTTCACTGGTTTTTATAGATATAGGGTTTTAGCACTATTAATGAAAACTCATATAATAAAAGGTATTCTCAAAAAGAGTCTCTAGATAGTACTTGTGAAACTTAAATCTAAGAGCCAAAACAACTTCTGCATACCTGTGCAGTTAATCATGAGAAAGACTATCAGTTTTCAAGTTTCTGGATGATTGGAAAACATAATTACTTTGGAAAAGAGGTAGACTATTTCTGAGCATTCAAATTAATCCTGTCTTCAGTTAATTATTCCAAATTAATCCAATCTATGATGGTAGGTCTTAAGGTCTCTATCT---AATTAATAATTTTACC----TCTAGTACC------CATATGTTAATGATAAAGATGTTTAAAACATGATGGAAAAATGAATCAGTGAATTAATACATGAATAACTTGATAGCAACCACAGGTAGAAAATAGCACATGATTTCAACATAAGACGAAAGCTACTGTCCCAAACTAAGGAGGAAAGAGAGTAGACTGCAGAACAAGTAATTCTGTTTTCCAGTTTGCCTACTATTGTCTTTGAGAAACCCAGGTGAGTGTTTTA

a score=16844
s chr3           151382452 685 + 160039680 ATACTTC----CTAACCATCTTCACTTAGCTCTTAAAAAGAATAAAAAGGAAGATTATAAAGGTTATTCCAAGGC-GATAATATTAGTGATCTTCCGCTGTGTTCCCTAAACAAGCACTTAAATTCTTTAATCAATAACTTCATGTCACTAGTTGTCAGCAAGTAATATTTTGTGTGTTCGTTTATTTTGAGGGGGAAGAAGAAGGCTA-AGAATTGATAGGCTTAGGCAATTCATCAGCTCTTGCACACAAATGTCCTTGAACTCTCTCTCAATCAATCAATCTGTCAATACTCTGCACATTCTCTGATAAGTGATAGTCATTTACAATAACAGCACAGAGAGGTT----------TTTACGTC-CATAAATTAGGTAGCAAACAAAGCTGAAGGAAATGGCAAGATGCTCCACCCAC-----TGTTAACGTCAC-------TTACACCAG---------------------ATGG---AACAAGAGATTCAAAAAT---GGAGCAACTTCAGTAAAGCCCAGAAATGTAACTGTTACTGAATAATCAAAACCAGCAAGTCTAA-AGTGTGTAAAGTGATACTTAGATACTTAGAATTTAATTCAAAGGAGTTTCGAGATTAAGTTCTCATGAACGCATAAGCTTTTAATGTTAAGCTTTTAATGTTAAAGA---GCATAAGAAACACTTGCTTGA-CCCTAACAGCTGACTGAAGCCAGAACAAGATCTGCATGCACGTAGCAT
s HiC_scaffold_1 137994484 703 + 233722169 ATACTTCTAACCTAAAACTCATCTTTtaactcttaaaaagaa-aaaaatgaatattgcaAAGGTTATTTCAAGACTAAGAGCATCAATCATCTTATGATCTCCTCTATAATTATGCACTTAAATTCCTTAATCAATAAATTCAAGTCACCAGTTGTGATTAAGAA-----------GTCCCTTTGT------AGGGGAGAAAAATGTTGTAAAATTGATGGG-TTAAGTAATTCATCAACTCCTCCGCATGAATGCCCTACAACTTTACCTCAAtaattcattgtgtcaatttactATACATTCTCAGTTAAGTGGCGTTCACTC---ATAATGGCATAGAAAATctccaaataatattttcttcatataaatTAT---GCaactaaaactaaagaaaattgtAAGACATCCAATTTACACATTTGTTAACACGATGCAATGATTAGACCAGGGTGCTCTCATCAGTTAACCTATAGAATAACAAAAGCTTACAAACTTGAGGAACAGCTTCCACAAAGCCTGAAAATGTGATTAGGACTCTGTGTACAGTACTAAGAGTTCTAATAATTTATAGAGT--------AATATTTAGAATTCAATTCAGAGTAGTTTCACAATTCTATACTTGC-AATGAATGAGTTATTA---------TTTTAAGACTAAAAATATATCTAAGAAACAGTTTCTGGATCTCCAGTAGCTAATTAATGTGCGAATAAAATTAGCAAGCAAATAGCAt

a score=9488
s chr3           151383364 344 + 160039680 GCCTGGGTCAGGAGGATGAGC-----ATTCTACACCCCACCCTCTCTCCACTTCCCAGCACATTAGGAACAAGT--TCTGCATTTTTTCAAAGGAAAAGGTGGGGAGACGGAACTTCCTATTTTATAAGAGAAAAGGAAA--CCAAACCTTTAAGGTGTCTGGGCTTGATTTTGATCCTTCCAATCCACAGTTGTCATTTGTTTGTCAGATAGGAAGGAG--TGCACACTGACCCAGGGGAAACC---ACTCCATCTGAATTATGA-CTGGTCTCCACCCCCAGCAGCCACTTAAAAGGGCCCTCTGCACTAGTAAACTATTCAGGTTGACAGAGAAAATCTGAAGAGGAACATGATAA
s HiC_scaffold_1 137995872 355 + 233722169 GCCCACGGCAGACTGATGAGCTACTTGTCCTGCTCTCCAGCTTGTCCCCAAAATCCAGGCCAGGAAACATGAGCAGGCCGCTCCTTTCCAGAGGAAATATTAGGAAAATGATATTTACTCGATtataagagaaaaaggaaatccaTCCACTTAGGGTATTTGGGTTTGATCTTGATCCTTCTGATCTAGACTTGTCA--TATTTTTTAGGTAGGAAAGAAGTTGTACGCTGACTCAGAGGAAAGCAAGACAACATCCATAAGAAGACCTCACTTCTTCCTCCAGAAGTGTCATGGAAGAACCCACTGCTTTAG-AAACCATTCAAGTTGACAGA-AGAGTGAGAAGAGGAATGAGATAA

a score=47256
s chr3           151386158 2009 + 160039680 CTCATAACATGTGAATCCAAATCAGCTGAGGTTACTGGACAAAACCATCTTGGGTGTCACTCAGCA-TCTAAATTCTCCGACA-GGTGC-TTCCCTTCCAG---ACTCTAGGGCTCGGTGAGTCCGTGCTCATGATTCATCCAGACCCTGCTGAGGGCATCTCAGTTTCCTGAGGAAGGAACCAGAACAGCAAGACACACAGCCCTCTGCAGCTGATATGGCTCA----GTGCCTCCTTGGTC---------TCCCTGCCAGTACTGCCTGACTCTCCTTGG---AT--ATGGTACACATCTTACATAGCTTCTCAGGAAATGGAGTCTAGATCCAGGGGCTCTCTGAAGATGTAACATTACTCTTCTCCTTGTTTTCCATATTAAGAATCTTACCT-------GAGAATTATTACTATTTATTTATCTTAGAGATGATAAATTTGA----------------ATGCAGCCATGGCTCTAGTCATATTTAGATCTAAACCTGAATTTCTGAACTACATTCTTCTAAA--ATGCTCAAAGCACATTTTAAAGATCTT--CACTGTTTCAAGGAGTACAAATCAGGTTACAGA---GCATAAG--ACATTTTCCGTTTCCGTATCTGAAGAGGTGCCCCTCCTCTCCTTCTGTCTGTCCTTAGGT---CACTTTCACCTTGT---TTGAGTCCTTAACAAATGGAATTCAAAAGG-TAGCTTTCATATCTCATAGACTCTTTATATTTCATGTAATATGAAAGT-------------------AGATAAGCTAACAGAGACCATCTGTAATATTTACTTACACAT--AAATTATTTGAAAAGATTTTTGCGTGTATAT--CAGTGCTTTGCTCACACACGGTGAGCCACATTGTCACTTCATGTCATCATTTGTCAAATGTCTTTGATAGTGACACCAAGATAATAATTTATAGACTCACCCTGACTTTTGAGAAAGTGTATGTTGTTTTACAACATTTTGTGCTACA-------------------------------ACTCT---GTAACTAAAAGTTTCATAATTTCTGAAAACTGATGCAGAGAAGGACTTGCAGTGTAATCAGATTTAACTTGCAGGTATGTGGATAAAATAACCTTATTGTAGAGAATGCAGAATGATTTTTTATTAACTGTTATTTTTGGCTAATACTGaaaaataaataaaggaatagaagcaggaaaggaaggaaaaaagaaagtgagtaaaaggctggaaataagggaagaaagagatgaaacaagaaaTCGCTTTCACACTTCCTACATATCCTCAATGGCATAATGAGGTATAAAACATAAATCCCTCTAAAA-TACAAAAATTGAAAAGAAAAATAACC-----------------TAAAATACAGTCCATTAAAATCAAT-AGATATTAGAATGCAA-TATAAATATAGTAGATTTAAAATAAATATTTGTTAAGACACTCTAGTAAAATGACTGAGACATCTGTGCTGTAGATTTCCCTTTTGTCCTTAAATCCAGAAT-ATTGAAAGAACTGTGCAAGTCCCCATAAGGAGGAGAACGGATGTGGCCATT-TAATTTGAAAGCACTGGCAAGTGGCTTTCTTCACAGCATTTGGGTGCAGGTTTTATG-GGAGAGCTGAA-CCTGTGAAAACATTGTATGTTGTACAATTGAAAACATCACAGACCTTCTAAAGGAGAGCAAATGTGAAATATGAGGCTATTTCAATCACAGAAAGTTACGCGTAAGAATTTATAGTAATGTAACTTAAATGCACAACTATAA-CATATAATTCTGCACA--CACAGGAACACGTATAAAATACTATAATTAAAACACCCATTAAAATGCACATGGACTTAAAAACCTCACTGGAATTCCACCATTAACTTTTAAA-GGTCTTAAAGCCTCCAGTTCAGCTGTTTAAATAATAGGAGGGCTTGCAATAGGAACATATTAGGTCACTGTATTACAAAAACATACATTTTATATCTCTTTAACGTTGGTATTTCTGGTATATTCTGTATATGAAGCATTAATAGCAG--------AGCTTTAGTGTTATTTTATCTCAAAAATGTCTTTTTATAAACACATGTAAATCTACTTTG-TGGGATACAAAGATCAATAGAAATGTTT
s HiC_scaffold_1 137998246 2027 + 233722169 CTCACTATATATACATCCTAATGAGTTGTACTTACCAG-CAAACACTGCATGACTGTCCCTTAGAGGCCCAGATTCCTTGATGTGGTACCTTTCCTACCAGGTCACATCAGAGCGTAGAGAGCCCACGCTGATGACTCACCCAGA----------AGCAGCCATGCTTCCTAAGGAAGGAGCCAGA-CACCTCGCCAAACGATCCGCAGATGTTGATAAGGTTCATGAAGGACCTTCTTCCCCATTTCCCAGCTCCTGTCTCTGATGCCT---TTTCCTTGGCACATTGATGGTGGACAGCT-ACACAACCTCCTAGGAAATAAAGTCTAGAGCCAGAATCTTTCTGAAGAAATAactttactgttat---tattttcacTACTATAAATcctgcatttctttaaaaaaaaaaaacactttacc---cTCGAAGATGATAACTTCGAGGGTAACTTTAACTAAATACATCTCTGTTTTCAGTTATATAAGGATTCAAATCTTGATGTCTAAATTCCAACTTTACATGTGATAATTTGagca---tttaagaattttttcaacATTTCCAGTGCTATG--TCAGGTTGCAAAAGTGTATCAATTACATCTTCTG----AACATCTAATGAA---TCTATGCCATCTTT---TCAGTTGTGAGATTTCCATTTCTCCCCAGTATTTCAAGCCCTTGacctatttcattaaaaaaactatattttatatttcacagaGATTTCATATTTAATACAATTTCATAATTTTGTACCTGACAGTTTCGGTACACTTTCACAGAGTatatttacagtatttatttatatatttaaaatacttgaaaacatttttgcatCAATTTTCCAATGTATCTATCAT-----------TACATC--CACTTCAATGCACCACTTATTAAATGTCATTAATAATGAACATGTGATCAGAATTTATAGACTgagcctttctttttaaaatatacataatattttcCAAGTCTTGATGCTAAATTTTATTCTTCTCTCAATCACTGCATCATGTATTCTATGGTAATAAGGAGTTTTGTATTTACTGAAAACTAACTCAGAAACGGTGCCACTGCTGTACTAGATTTAAGTTGCAGAGAGGTAGATATAG-ACTCTCCATGTAAAGAATATAGGATCATCTT--ACTAGTTATTATTTTaagttaataaagaaaaa--agtggaggaaaagagtaaaggaaagaagga---------------------------------gaaatagTAGATTACCCATG----CACTTTAACAGTatggatatat------------------atgtataatttagaaccctctaaaaatacaaaaa-------aaaaaaaaaccctttcagGGTATACCAGTAAAGCAATTTTTAAGAAAGTCAATTAGATATGAAAATATAGGCTTATATATAGTTGAT-------GAATAATATTCAAGAAACTCAAATA----GAGTAAGATATCCATAAAACAcatgt---ttttatactttaaacTAAAATTACAACAAAGAAAGCATAAGTCTTTAAAGGATGGAGAAAGGAAGtgactattcttttttaaaagatttggcAAGTCACTTTTCTTATAG---TTGGGAG--GACTCTATGTAGAGAGCCAAAACCTGTGAAAATATTGTATATTGCACCACTGAAAATATTATGGACATCCTGAAAAATAGCAAAAGTGAAATACAATGCTATTTCAATCACATCAAGTTAAACATCAGGATTTGTAATAATGTAACATA--TGCAGAGTTATAAACATATAATTCTAGACAAGCAGAGGAACAAGTATAAAATACTGCAATTAAAATATCCATTAAAACACATACAGACCTAAAAGTCTCCCTGAAATTCCactattaacttttaaaaggTCTTAAAACTGTCAGTTCAGCTGTTTAAAGAATAGGAATACTTGTAATAGGAACATATTAGGTCACTATGTTACAAAACCCTAAATTTTATACCTCTTTAATGTTAGTCTTTCTGGGATATTCtgaatgtattttattaataGCAGAGCCTCCCAGCTTGAATGTTATTTTAGCTATAGAAAGTCCTTTTG-GAACACATGTAAATATACTTGGTTGGGTTAGTAatatcaatgaaaatattt

a score=63135
s chr3           151393890 6946 + 160039680 [encoded data, 7395 characters]
s HiC_scaffold_1 138007950 5786 + 233722169 [encoded data, 7395 characters]

a score=79387
s chr3           151401239 3960 + 160039680 [encoded data, 4236 characters]
s HiC_scaffold_1 138016326 3833 + 233722169 [encoded data, 4236 characters]

a score=45969
s chr3           151410900 1457 + 160039680 TATAATGTGTTCAAA--AATGAAAACATTTTGAAG------TTTATTTAGCATATAATGGGAGTAAATATTTTAGAAAAATGAAATGGAAATCTATTCCTGAGTTCTTATGCTATTTAATTGAATAATATGT---CAGTT-TTATACAGTTCATATAGCTCGAATTCCAGACAGACAGGCAATATGGAATTTAAGAATCAGAGACATTTCAGTATTGGCTCTTAAAGACTTCTATAATTGATTCCCTGTCCAAAGGTTGGGGGTGGGGCTAATATATTGGAAAGAATA--------CAACAAAT-TAAAACA--------CAGTGAAATTTACTTTTATAACAA---CATGGA-----GGATTTTTATTTTTTTAT------TTTTGGCTGAATGACAGCAAGTGTTAGTGTGTAACTGCCAAGGTGCCAAGGTCATTAGCATATAGACCGAGAAAAGAAGACTAGTTTTGGTTTCA----AAAAAATAAATTTCCC-ATGCAACCTGAAATGGTATTCCTGCATGGACTCTCTATTCCTTATTTTAGTAAAGTGAAATTGTGTTTCATTTCAGACCATCAAGAGCCTACCTA-TACATTTTAATAATTACTTTTTGAAAGATTTATGATTATGAACTTGCATCCAAATGGTATCTGAGATATTTATAACTTTTAAAATGATTAAAGAAACTTaaaagaa-------tgggggaagaagaggtaaggagagaa--agaaagagtaatggggtaaagggaagagagcagaaaagaCAATGAGCCTAAAATCAGGCGCATGCGCTTGCCTTGTCTCGCCTTGGGTTCGTTCCAGTATGTGGAGTCTCAGTTGGCAGAATGAAGAAGTAATTCACAGATCCTGCCAATCTCAGTCACACTCACAG-AATGGATTCTGGCTTTCCTAAGAACTCACCAAGAAGATGTGGGTTGGCAGAACCCATGTGGAAATTCATTTCATCTATTTCCATTTTATACTGTCTATCATGCATTTTTGATAGCTAAATGGGA---AAAAAATGGAGTTCACCCCTATGAATTTCCATCAAGTATCATTTTAGCTATCAGTTGTCACACCTGCTACTTGATGCATTTCCATCAATTGACACAATTATATATTTTTTCCAGCCTGTATCATTCCCTGGGGTCTTATTTATTTTGCAATAAATCCAATTTATTGAAAACGTATTCAATCATGTTAACACATACTAAGCATTTGTTTCTACTATGTTTAAATATCCTTCAGGCCGATTAGGGAAGATATTGACTAATAAGACTTTTTTAAGCTAAAATGAGTCACC-ATTTCTGAGATAACAT----GACAACTTGCTCAGCTTTCTTTAGAAACATATAG--CAGCATATCTGCTTAGATTTACACATAATGTGA-------CCAAGCTTCTTAATATCTCCTTATAAGGTCTTCCTAAATTCTGAAACTCTATTAAACTTTTAGAGTCTATCTGTTGCCTCCAAACTTT----GTTAAATTCATATGTCTATTACATTAGCAGT
s HiC_scaffold_1 138024772 1465 + 233722169 TATTCTTTGatcaaatgaataaacacttgCTGAAGATGACTTCCATTTCCTACAtaa-----gtacatattttaaaaagatgatctaCAACtctatttctgaattttcatgtTATTTAAC---ACAGTGTGTGATCAGCTATGATACAGTTCATAAAATTTGAAATGTAGTAAGACAGACATTATCg--tttatatatcaaaaatatttgaatatttatgataaaaattttctACTAATATTTTCC-------------AGAGTGAAAATAATATACTGGAATGAATAACAGATAGCAATGAATCTTAGATAACTTTTCTCAGCGAGCtcaatttaaatagaaaattcatgaaaatttgtaatcttccttttttgtgttttgtttcggTTGAGCGACAGCAAGTATCAGTATTTAGCGGGC------CCAAGGCTATCAGCATGCATACT---AAAGAGAGACTAGCTTTGattacataaaaaaaaataaattttcttgtgCAACTTCAAAACTTTTTCCTGGATGGACTGTAT-----TTATttcacagaattaaaatttttgtgtagCTCAGAACATTGAGGACatatttactgaattttaatatttacctTTTATAAAATTCATGATGATAAATTATGATTAAAGC-------------TTTAGAGAGCTTAAAATCATGGAGTGAACCgaaaagaaatgaagggagggggaaaagaggaagggagagaggcaggaagagaaC--------ACAGAGGAGAACAGGAAA---AATGATCCTGACACCTGCTAGACAAACT-GCCTTTCATCCCCTTCTGATCCTTCAGTCATCTAGTGGTGCAG---ACAGAATGAGGAAGTAATTCAAAGATTCTGCGGATTCTGGTCATTCTCACGGGAATGGATTCTGGCTCTCCTAAGAACTCACTGAGAAGATGAAACCAGGCAGAATCCATGGAGAAATTCATTTcatctctttccattttatacTGTATATCATGTATTTTTGATGactaaatggaaaagaaaaaatgaaattctaacatatgaatttttattaaatatcatGTTAGCTATCAGTTGTCACACCTGTTATTTGATGCATTTCCATCAAATGACacaattatatatttttg-caACCTATATCATTCTCTGAAAACTTATTTACTTTGCAATAATTACAACTTACGGAAaatctattcaaatattttagc----aCCAAATAATTGTTTCCAATATATTTAAGTAATCTTCAATCTGAATATATAAGTCACAGTCTAATGTATCCATTTTATGCTAATG-GAGTCACTGATTTTCACGGTAATGTCCTAGCCATTCTGCTGA-CTTTCTTTAGAAACATACAGGTCAGCACATGCACTTCAATTTGTGCACAATTTCAGGAACTTACACACTGCCTGATAACCCTTCCTAAATCCTTCCCAAATTCATAAACTCCATCAAATGTCTATAACCCATCAGTTGCCTccaaaattttatcatttgaCTCACATATGCATTACATTTTCAGT

a score=34993
s chr3           151417607 1567 + 160039680 gggagagagagagagagagagagagagagTGTCT-CTTTTAACAAGGATGATTTCTTTTGTAATTTTCCTTCCAAATATTTTTAATATAATGACAG---CTTTTCTTTTAGCAAAAATATTTGTGGCATTCATTTCCCAACATCGAGTTATTAAAA-TATGTTTGGTTGCATATCATGTGTGTGCACCATGCTGAGTGAAGCAGAAGTCTTTTCAACAGTTGATATCTGCTTCCTCCTTTTCTGTAATAACTCTCTGTCTTCAGTTAATTGAATTGACAGGGCACCACCCAGGTTTCCTCT--------GACAGTGTTGTTAATCTACTAAAAATACCCTTTCCCCGAGTCAATAGAAAATAGGTGGTCCTTATCAACCTCAAAGAATGACTTAACTGTGTGTGTGAAAGAGCACAAAAGAATCAGTCTCCATCCTTGAAATCTGAGTT-AGAATAAATCCTGGAAATAGCAGTTATTTTATCAGGGAATATGGACCTTGACATTTCTATACTTAGTCAGCTTAACTCTCTGGTTAAGGAAGGGGGAAGAAACCTGACTTAATCATCTCAGCCTCC-AAATTACATCATATATAGCGAGTCTTGAAATGAAAATGTATTTTACCGACCTGCTCCGTGAGGCTTATATCCCTTGCTGTGACAAAGTATTTAGGGAGAGAAAATGACAGATGTTAGGCACATTAGCACAATGAATAGTCACTTCTTCCCCCAGATGAAGCGCTTTTATCACGGCAATTTATCATGAACAAGATAGTGATTTAGGAAGACGCATTAGAACCGCAGCTCATACTGCAAAGTGAGTTAGCAGGAGTGAAGCATGGCTGCCTGAGAGATGTAAGCACAAGCCCTTCAACCTGCATGCATCCGCGGGACGTTTTTACTTCTGACTTTAATATTTTGAAACTGAATATCATCACTTAACACTGAATGAATGAAGAAATATCCAGAGCTCAGAATGCTTCAGGCTGA-GCTAG--AGGCAGGGAGGTGAGCCGTGATCCAGTCAGCAGTGACTGCCCTGTGCACTGCAACTGATATGCTCACATGTTTTTTTTTTTTTATTACTGGACTAATTCGTAGCAAGTATTGATTCAACTGCCTAAACAACTGCTAAAATTTCAACCATTTTT------ATCCACATTCTAGGAACAAGTATGTCAAATTTCCAGAAACAAACATTTAAAACACAGATAATTTATGTTTGATTATGTTACTTATTTATTTTTTATTAATCATTACTAACAATT-TGAAGTGTTTTTTTAAGTCCAAATCTTTCTAAGAAGGTTGCTAGAAGGTGGAGAAGTGTGAACCTTAGAGCCTAAGGGGAGCCTTTGTGAGTCCAGGGAGCCATCCAGAGCTGCCCTCTACTCTTATTCACTGACTTCCTCCTGGAAGACCCCCTCTCCCCCCTTCCCCCGCCCTCAGCTACAAGGACAAGAACCTTGAACAT----CAGG-------AGCTCACTGTTTTCT-GTATGACGATTAACATGCAGTTTGAATACAGTGTAGTCATA-------------ATGTTCAGTAC-CTGTAAGAGAAGGATAGACAACTTGCCTCCGCCTCTGAGAACTCCTCA
s HiC_scaffold_1 138026851 1466 + 233722169 gggaaaaataaataaataaata---atagtgcCTTCTGTTAACAAAGATA------TTAAGAGTTTACctattgcatatttttaatatCATGGCAAAGTTTTCTcttgtaaaaaaaatgttttt--cattcatttatcaacattcacttattaaaaatatactaGAATGTGTACTACCTCTGCAGACTATCCAGAT---------AACTTTTTAAATAGCTGATGTCTGCTTGTTTCCTTTATGGAATTACTCT--GTCTT-AATTTATTGAATTCACAATGTTCCACTACAATCttctcttccaaaaagaaaaatttttaaatatactaaaaatgttttttcttcaaGACAATGGGAAATAGGTGGTCCTT-----CTACAAAGAATTACTTAACTGTGTATG--AATGAGTACAATGGAATCAGT-----GCCTCCCGATCTGAGTTTAGAATAAATGCTGGAAATAGAGCTCTTTTTATCAAGGGGTATGGATGATGACATTTCTATACTTAG---GCCTTAATCTTTCatctttgaagagaaaaaaatactgatcTAATCATCCTAGTATCCCAAATTACATCATAGATAGTGACTCTCAAGATGAAAACATATTTCATGTACCTCCTCAGTAAGGTTTATATTCCATGTTGTGACAAAGTATTTGGGGAATGAAAATGACAGATGTAAGGTACATTAGCAAAGTGA--AGTCA---CTTCCACCAGATGAAGCACTTTTATCAGAGCAATTTATCACAAACTAGACGGTGATTTAAGAGGAAACACTTGAACTACAGTATATAATGAGGAGGAAGTTGGGAAATTTGAAAT----------------TATGACCACCAATCTGGTAACC----TACATTGGCAGAccatttctg---------ttactattttaaAGCTAAGC-TCATCACTTAAAGGATGAGGAAGTGAAAACTAT--GgttctcagaatattttaggCAAATGTTAAACAAGAAAGAAGCTTAACCCTGACTGAGTCAGCA---ACTG-CTTATATTTTGCACTCCATTTTTgcacat-ttatatttcttgaatgatTTGGTTGATTT--------------TTCTACTGACTTTTTCACTgcttaaaattt--ccatttttccagTGAAACACGTTAGACCAAAATCCATGTCTGAGTTCAAGATCCAAGTACTCAAAAGACAGA-AAGTTGTGATTaaatctatt--ttgttt-cattctatgAACAGCTACTGACATTGAGGAAAAGTTCCTTTAAGCCCACATGCATTCAGGAAGACTTCTAGAGAAGGAAAATCTG-------------CTTTGAGAAGTGTGTAGCAGTCC--------------TTCTGTCCTCTGC------TCACGACATTACACATGAAGAACCTCCTCT----------------GTCAGTCTCTGAGAGATGAA--TTAGACATAGCCCAGGAAGTGGTAACTCACAGTTTTTTGGTGCAATAATTAATGCACACTTGATGCTCAGTATAGACATGCTGTGATAAAGATACGTTTAATATACTgtgagaaaagta-aaacaaagtgcATCCATTCTTGAATGGCCTTCA

a score=14763
s chr3           151422246 936 + 160039680 ATTTTGAACTCCCCAATAAGCATAGAAAGAAGTTCCTATACTTTGAATGCCCTCTCCAAATTCCAACAAGAAATGTAATTGCTTTTGTAAGAGTGTGAAGAAATGGATGAAGCCTTAAAGAGGGTATGGGCCATCAGAACTCTGCTCATGAAAGAGTTTTAACATGAGAATACTTTACTGTGGAAGT---CAGCTACTAAAGACTTAAACCTGGTCTTCCTTCTACACATTCCCAGCAGCTCTCTCACAGTGAGCTTCCTGTTGCCCA----------GCAGAAAGCATCTTCTTATTTGTGGCTTAGAAATCTCAGACTTTTTAGCCTTCATAACCATCAAGCAAATAAATAAGTGCCTGTGGGTTTTC----------TTTTAAACAATATATAAATAACAAACAAACAAACAAAATG------AAAACAAAACTGCCTCTAAATCTTCTTAGACAAATGTGTCAAATTCTCCTGTTGTCAAGAAATATTAATATCATTTCTCTAA-----TAGGCTATTTGAAAGGTTTAAGCATGCATTACAGATTATCTGAAAATACTTCTGTGGCAGCTTATAAATAATTTCTTTCTACAAGTGTCAGTTTTTA-AAAGT-TAGTGTTTTAGAAGGTATGTTAAAGTAGTAATATTAACAGTCTCGTTTGAAATTTTATGAGAACTAAAGTGTTAATATTCATAAAGTATATTACAGTTCCTATGTAAAACTCGTTAACTTTAATGAATGTGTA--GATTCCAATAAAAAGGTTAGGCGTGGAACTTACTGAACTGAAAGAAAACTGTTCTTCATGTGCAGTT-ATCACATCACGTCCATATGGGTAAACTG-TAAACAATCTGACTCACTGAGTCGTAGCCTTGCTTGAATTGTTAAGTTAGAGGACAAATT-----------GTCTAAAACACACAACGG----AAATATAAGAACA--------------ATAATTTAATACTTGTCGTCC-CCTTGTAAGTGAATA
s HiC_scaffold_1 138029519 950 + 233722169 Attttgaatgtttaaataa---tttatggCATTCTCTCTGGTTTGTCTGTCCCTTCTGAAATTCATGTTGAATGTTAATTGCcattataataatattaataagtgGA----GCCTTTCTGAGGTGATTAGACATGGG-------CGAATGGA-TATTTTTGTCATGCAAGTGGGTGTCTGTGGCAGTGGATAAGCACTGAAGG---GAGCTGGATCCTTCACCCCATCACTTCTACCCATGCTCTCACTCTGCCATTCCTCCTCCTTGTTATGAATTGGCACGAAGGTCTTCTCTAGCTGTGGTCCATTCGTTTTAGACTAGACAGCCTCTAGAAACTAGAGTCaaat--------------gagttttcatttttaatactttagCCAGTTTGTGGTATTCTGCTGTAGCAGCAGAATGTGAATTAAGACAAAgatgtttctaaattttcttatATG---GCATCGACTTTCC---TTGTCAAGAAATGGTAACACTTTTTAACAAAGTAAATGCTGTATTTGCAAAGATTaatatttcatgtttaaaaaCCAGAACACACACTCATGAAAACATATCACTAAATTCCCTC--CaagtaaatgtttttataaagtgttacattttaaaatgtatgctaGAATAGAAACATTAACAACCTCTTTTGAAGTTTTCTGGGAAGCAACGAGTTAATACTGATACAGTTCATTGAAGTTGCTA---------------ATTTAAAGAATATGCATGGATTCTAATCAAAAGGTCTGGTGTAAAATTTACCCAACTGAAAGCAAGTTGTTCTTCATGTGTAATTAATCATGAGACTTACA-GTGACTGAACTGAAAAACATCCTGACTCTCTGCAATTCAGTCTTGCTTGAaaagtgaaataagaaaacaaactgagTAACATCAGTCTAAAGAGCACAATAGCAACAAACATAAGCATAAATGTCATAATGCCATCATTTAATATTTACTGACTGCCTTCCAAGTGGATA

a score=33232
s chr3           151428879 1140 + 160039680 TTAGTTAATTGGATAACAATACTTACATATGATTTAATGATGAGCTGATTTGATACT-TGAGGGTAGAATTTTAGAAAGA-AGTTGAATAATATGCCTTTAAAATTGCATT-AGGCGAGTTCTTTGAC-TCTATCTATACTTCTTCAAAACTATGCAGTCCTTGACA-GAGCCAAGGAGTTAGG-----GAAAGTCGGGGAAGAACAGACTCATTTGTGTGCCATATTA--CCTGTCAATAAAATCATTGTATAGT-------------ACACTTTAAATTCAAATAGCATTGTTTGTTAGGTGAGAGGATTTTATGTTGACATATGCACAAAATTAATCCCTACATTTGACAGCCTTATAAGTCCTTTGGAAAACAGAAgacaacaaaacaaacaa---gagatttagccattctactgacaaggacaggagggaaatggaacaaaattagtgtatttacaggacaacctttaagaccataataacatagtgcctctcaaatgctgTGGTAATGGACCACAGAAAATGGTAAACAAGAGGCGTCGTTTAAATGTTGTACAAATCAACCTTATCAACTTTAGCTCCCAAAATAAAAGTGGTGCACGAAATTAATTTCCACTTTCCAAA-----------GTGGGTGG-----------------GGGGGACTGCGAACAAAGGACTCACAACTTCAGTGATGTGCAGTCTTATAAACTTTCCAAATGTTCTTTTCCTTAACTTCAAGCAAAACAACTTTTATGCTAAAAGATACAGGGTTTTGGGGAAGCAAG---AGGAGATATGTTGCTAATGACAGAATCCTGAGGTT----GAAATAAAATCAATAAT--------AAATCTGGCTAGTAAT-AATATATTAGTA-TTTCTGTAGGAGCATTAGTGAGTTACTTAATAGAAACTAGAAAA----CACTAAACTAGTATT---TATATAG---GTTTTTTAAGG-------ATATGAAGTTTTATAAATATTAA----TTATAGCAGGATGTAATGATTATCTTCTAATTCAATTAGACAAAATGATATACACACTCTAAATGGATTCTCAACCTTAGGCTTAAGGGTCAATTATGCGAGCAGTAATTAGCTT---ACTTTGGTTTTCAATAATTAAA----TTCATTGCTAACTATCAATGTAAGTTAGAAATCTTTCTGTTTTAAAATTATGCATTTTATT----AAGACTGGTTCATAAGTATCTAGAT
s HiC_scaffold_1 138041693 1204 + 233722169 TTGTTTTATTGGATAATAATACGTGGAGATGGTTCAGGGCTACAGTGATTTGATACTCTAATAATAAATTATTAGATTGAGAGTTCGATAATGTATATTAAGAACTGCATCCAGGTAAGTTGTTTCTCATTTATATAGATCTC---AGTGCTACACAGAACTTGCCACAaaccataaaattatattttaaagattctgataagaatagatttatttttg----acattattcTTCTCAATAAAATTGTTACACCATGAAAATATGAGGAACACTTTAAATTCAA-CACAATTGTTTGTTAGGTATGAGCATTTTGTGATGACAGACTTACAAAATTAATCCATACTGTTGACAGCCTTGTAAGtccttcagaaaacaaaaatacaaacaaaaagcagTCTGAGATTTAGCCATTCTATTGACAAGGACAGTAGGGAAATGGAACAAAATTAGTATATTTAGAGGACAACCTCTAAGACCATAATCATATGGTTCCTCGGAAATGCTATGGTAATGGCCCACAGAGAAGGTTAAACGAGATACATCATTTAAATATTGGGCACGTCAACCTGATCAGTCTGAGCCCTGAAAGTAAAAGCAgtacataaaattaatttcagcTTTTTAAACAAAGCTGAAGGAAGGTAGtcaacaaaaggaaggaaggaagatagtCAACAAAAG----ACAGTTTTAGTGATATGTATTATTGTAAAGCTTTCACATGTGCTTCCTTTCAA----AAGT-AAACCGTTTTTATGCTCCAAAATATCGGAGTAGTGAGAAATACATTTAGTGGAAACATTTCTCATGATTGGAAACTGGTATTATTCAATATATAATAAAGAACAATCATGAAAACTTGgctaatcataaaaatattaatattttcaatagatatgttagctttttatttaatatgaatCAAATTAATGCTACTTAA--AGTATTTAATATGtagctcatttttaaaagaactgctAGATGAAG----GAAAATATTAACTTCTTACTGTGGAATCTTGTTTCTATCTTCtaatttaaatattgaaaatga-----------------gAATCTTAAGCTCAGGATTAAGGGTCAATTATGTTGATAATGATTCAACTGTAACTTTGATCTTTTAGAGCCAAACAATTTCATAGCTAACTAAAAATGAAGTTTAGAAATATTTCCACTTTAAACAAATGCATTTTAATTGAGAAGATT-ATTTGTGAATGTCTAGAT

a score=23045
s chr3           151430815 1380 + 160039680 GAGTGAGAGGCAAGAGTAATGAATGGTTACCCACTGTAACTAA----------ATAAGAGACCGTAGAGATGTGA------------TACAAGTGGTTTGTAAAATAATGTTAA-----ACATAAACCAA------TAAAATAAAGCTACCTGATAGCCTCTTATT--GGTGATGCTAATTTATGAGTTATCTGCCCAAAATGCCAT-ATGATATTGGGACTTTTGAAAGATGAGATGATGACCTTCAAATTTGTCCAATCACTTCATTAGGCGTAAACATGTATTTGCAACCAATGAAGCATCTTAGTACTGTTTATGATTATTTATAGTGTACACTGAGAAATGCTGAAAATTAAGAACCTGATACCCattatttaaaaaaaaaactaaaaaataaGATAGAATACAAAAGATGATCAGTTAATGCA----ACTTAGACTTTCAAAGAATTTTCTCCTTCTTAAGCCAATATCCCTTCCCA---GAGGTTATTAATAAAACATGTTGTAGACGGAAATTAA-ATCTTAGCCAAGTTTAAAGGTGTGTGACAAAGTAGAGAAAGCCTAAAACTCTAATTCCCAATGTGCTTGGAAGTTACAACAGATGCTATCAGGGGCTCTA--GACCATGG--TTGTATCATTCATTTGCTCATCACCAACAATGGATGTGACTTGCTCTTACTAATCAGTTATAAT-------TTTCCTGAAATAAATGAGCAATTGTGACAAATTTTCACAAGATAAAATAAACTGGCAGTTGAAAAACCCAAAGGTAGATCAAGTTTAATCTAAAGTATACTGCACTGCAAAACTAAAGAAATGGTTTAAATTACTAATGTGTCCTGATGGCGTTGGTAA-------------CCTCTAGAGATATTACTCAGAGCAATGGGATGAGCCAG-AGCAATCAACTATGAATGAA-TCAGCACTATGACATGTGGAACGCAGAGTTAAAATGTGTAGCACTATTAAATAGAAAGCTATCT--CACCACAGTGTCTGTTTTAGAAGTGCTGCCCTCTGGAAAGATGAGTTCAGCTGAATATTTGTATGACATGAACAAGGTCCAAACAAAGGAAGATAAATTAATGAAACAATTTGGAAGTCTGATAAAAGGCAAATAATTAGCATAGAttctttcttcctctccctctctcctcctccctccctttcattgctctgtctcttgcctccctcctccagcccctcttttcccactgcctttttctaccttcctttcttTATCCATAAGAAAAAGGCACTA---------TTCCTAAGTTT--------------------------GGGTGGAACCTTAAGGGAGAACTAGCCATGTAGAATAGAAACATGTA-AACTGTTACTCAGAATAATGGAAAGGTGTAGTGATTTTTCTGAAGGTCACCGAACAATGGAGTGACCAGCCGGGGAAGAAACTCTGGTCCCCACCCTTACGTGCAACACTGAA
s HiC_scaffold_1 138043263 1291 + 233722169 GAGTAAATAACTAGAATAAGGA----TTACCTAGTATAaataatattcagaaaataaaaaacca-agaAATTTGGAAGCAAACTTAGTAAAACTAGTTTATGAA-TAATTTTAAcacatatataagaaaaattatttaaattaattctaTATTGTAGTCCCTTGTTTAAGAAATGCTAATTTATAAGTTATATATCAGTAATGCCTTTCTGGCATCATGACATTAAAAGGCT---------ACCCTTAAACTTGTCTAATAACTACATTG-----AAAT---TGTTTGAAG--------------TAGTATTACTTGTGTCTATTTATTATTAAAGATTAAATACAGAGAAAACCTAGG-TGTAATGCCtgtt--ttgaaaaaacattttaaatataaaataaatgacaaatgagTATCAGTGAATGCATTTTACTTAAATTTCCAAATAGCTTTCTATGTTTTAA----ATGTCTCTCCTCACAGAAGGCTATTAATATAACAGgttacaaaaagaaatttatgtctTATTTAAGATTGAACAC-TGtgactaaataaaataa----------ttaattctcAAAACCATATGCAGTTATAAATGAAGTT-CCATGGATTATACAAATCACAGACTTTCATCTTTAATATTCatttcaataaaaa------------------acaaaacatttataatattaaaCTTTCCT-AAGGATATGAGCAGTGAGGG--AATTTTAGGAAGATAAAATGAGCTAGTGATTGAAGATCACAAAACTAGCTGAAAAGTAACATAAA-TACAATGCATTAGAGATCTAAAGAAATAATTTACACTACTGACACTTCCAGATAGATTTTGAAAAGATTTTGTAAGATTTCTAAGGATACTACT--------TTGGACAAGTCAGTGGAAAACCACTCTGAATAAAATCAGTGATATAACATATTTAAAGCATGACAAAAATGTGTAACAC-ATTAAATAGATGGTAATCCAGCATCACAGT-------CTAGTAGTAC--------------AAGAAGTTGGTGTAATAACTGTattaca-------aaccaaaaaaaaaaaaaaaaaattaatgaaatactttggaattttgctaaaaggcaaacaattagcataaattctctctttctt------------------------------ctctgtaaaTCAA--------------------------------------TACCTgactt--------------aaaaaggaaacaaaaagttgGTTCCTAAGTGTATAGATGCTGGTTTATAAATCTTTGTGAACAGAACCTTAGGGGCAAAGAAACTATACAAAACAGAGATATTTGCAAATGTTAACCAGAGTAATGGAATGACTCGCTGATATTTCTGAAGGTCACAAAACAATTGAACAACAAGGCTGGGAAGGAACTTCGGTCCCCTCCCTTCCACACAGTATTGAA

a score=71698
s chr3           151437668 4284 + 160039680 [encoded data, 4801 characters]
s HiC_scaffold_1 138047835 4378 + 233722169 [encoded data, 4801 characters]

a score=56544
s chr3           151449582 3136 + 160039680 TTACTATCCAATTCTAAGTGTGATTGAAATAAAAGAAGTGATCACAAG---TATGAGAAAGAGACATTCTTTCTCTCTACAACTTCAAATCATTTATGTGAT-TTTTGACACTCATAATATATAAAA--CATAGAAATTCTATCTCCATTCACAAAAAT---------ATTTTTTAAAATAGGTTTTAGCATCCCATAAATACACCTAGCTC---------------TAAGAATGACTCT----GTTCTGTTTAGCATCGATGCCATCAACAGGAAGATTAC------------------TGGCTCAGAAGAATG------------GCAAGGA-------ATGAGTTT--------------------AAAAAATTCACA-------------------------AT-ATCTCAGAAATT----------CCTTTCATGACTATATGC------------AATCTGATTTTGTGGGGGTTTTTTGTTGTTGTTGTTATCAAACATCCAAT------CCTTGGTCTGACTTAATATTTGAATTTAAGTATTTCCTAGTCAGCTTCATGACAGAAGACCACTGAACATCACATATAATACACCATTGATGTAAATTT-----CTCTAACATTT----TAGCCGCTCTTAAAAAATGAATTAGAAGCATACTTGTCTTGTGTGAAAATAGAA---------ATT-----TTTCTGGAAATTAAATCCTTAAGCAAGACTGGTGCAATGCTTTGACTTGTTTCACTA-TTTGGACTGTTCTCACTGGCCACAGGTAGGGGAATTTATTTTAAAGCACAATTTCATTGTAGGTACA--ATTACAGTGAAAATGATCCTgagagagagagagagagagagagagagagagagagagagagagagagagagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagaatgagaaagaaggaggaggaggaggggaagggggagggaagggggaggggaagggggagAGTGATAACAACTGGAAT-TAGGGAGAAAGCTCTAGCACCTTATTTCTGGACCTTTATCATGGATGTAAAACATGAAAGTATTGTATATTCAGGTCAGATAATTTTCATTAAAAAAATGTGATTATCTGGAATGACATTGGTCAGACAAGCTCAACTCCTGCAAAGTCGCTTCTTCTGGGATTTGCTACATGGTAATGCTATTTTCCATATTAACAAGATTTTTTTCT--ATACTCTCAGTTCAGATACATGAGTTACACCACCAAGAAAAGTGAATATGTGCACAGATTCATAGATCCACTTTGCAGTTGTGTTAAAGTTCCCAAATAAATTACCATTAAGGCAACCCAGAATGTCAGAAGAGTTCAAACTATGTCCTAGACTAAGGAGGAA-TTAACAGTCGAGATTTTTATTTGCTATGAGAGGAGATGATGACTTTCTCTGGGACGATGAGAATCTAACCAAATATTGTAG-CTAAATATAGGATACAAAGCCGTGTGCCATTTCTGAAGATGCTATCATGGAGAAAACCCAATGACGGGGCTTC-ACACTGTAGTTTTTAGGTACACAGATTCAATTTAGAGATTG-GGTTTGAAAATAAAATTTACTGCCTGAGTGTTTTTGGCTGATAAGAAATGGATTTTGTGACCCTGGTGCACATTAATTGAAGTATCTGGCAATGTGTCTCGACCAGGTTAAAGGGACCATATGTACTTGGAAGCATATTATTGCTTCACATTAAGCTCCCAAGTTGAATCTCTTCATTACCA-TATAAGGAAGCACACTTTACCATCTGGAGAGCTCAAGCTAACACTGCCTACTGCCTAACACCTGAGTTTTATGCAATGTACCATTTATTTTTCAATCAATTTTGAAAATTGATTTTTAAATGTAAGAATGACATTATCAAAGGTTATATTATTTTATATCTTCTAATATtttagttttaatatatttccttgcttttttacttttttattcattcattcattcatttttgcttgtttgcttgcttctttGtttttgaggcgggtttatgttctaactcaagctgacctagaactcattatgtattccaggctagtctcatagtctcaaacccagagttctccttctttagcctcttaaatcctggaattaaagatatgcactactatgcctggctAATATCTTCTAATATCTTAAAAGTTTTATTCATTAAAATATACA----GAATTATTGGCTGATGACTATATTTTCACATAATAAAAGTGACACCA-GTGTGGTATTAGCCATTCA-----CTTTCATAATATAATTCTTAAGATGGATGAATGAAAGTAGTTGCATGTTTCAGATGATAAAATACATGGACTAACTATGTAGTTGCCGGTGTTCTTTATGCCACTTACGTGCTGGCTGTTTTGACAGGTTTTGGTTCTGGTTTAAAGTACAGGGTACAAAATCATTTTAAAAAA-----AAAAGAGCTTG--------AGGCAATGGTGA----------GAATGTAAACTTTTCCCAGAG-GTCTCTCAGATTTGGGGAGCTTAAATGACTGA--GCAAGATATCTGTTCAATAGCTGATAATGTGTATTCCCCTTTTTCTCTTTTGTTTATGCAATAAATATCA-AATGTGGAACACGACCACA------GAGTGACTTCATGTCTCCATCCCTCTGTAAAACAGGTACACATCCTGCATCCTACAGAAGTTATCACCAAAATTTTAATTG-ATTCATGCTTAACAAGTAGA-CAGGCATTAGG--GAGATACACAGTATTTTATGTGTTGTTATTA--CACTGAAATTGACACAGACAGGACATGAATTAGTTTGATAATATTAAACAGAAACTAAGCTGGTTCTAACATTTGTTTGATAGTTTTGCCTTTGTGGCAAA--CTCAATATTCTGAAAT---AAGGGAGTCATATATGCTTTCTGTCAGAAAGAATCTAATCTTATGCCTATTTTCCTGGCACGGTATGAAGGAGAAATTCTG-AGATTATTTCTGGACCTTTATAAACACAGAAACCCACTGAGAATACTAAAGAAAGTGCATCAGGCCCAGCTCTGCTTTCTACACAGTGGTGGATGG-GAGCATCTGCTTGATGAGGCTGAGATGTTTGTTCAACTAATGTTATGTTCATTGCAGCAGCTTTGTAATGG-ATGCCATGTGGAGGAGAATAG---------TGTGTTTTGGACTTTGAATTTCAGTTCATTAGGACACAAGTACGTCTGAGACTTTTCAGTAGATGCATTAATTCTTGTTTTATCGTCAACAATCGCTTTA-GCTCATCCTTTGGAAAAAAATCAGACGGCTGCCTGACAAACAAA
s HiC_scaffold_1 138056922 2860 + 233722169 TTATTATTGAATT-TAAActtgattaaaatgaaataaatgatcaCAAAGGATctggaaatgaataaaatattctttatgcagttagaaatcattttatcaatattttgatATGCTTAATATATAAAGTTCATAAAAAGT-TATCTCCATCCTTAAAAGttatggtttaatttttaaaaataccttttaacCCTGCATAAATGTACTTTACTTCCTCCTATCTTATTATAGCAAATattcttttcattctatttagCACTGCTAAAATCAATTAAAAGATtgcatgtaggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcagtcatgagtttgatctctggtaccgataaaaaaaaaagttgcatgtTTAAGATTGTGGGTTAGGGAAAATGATCTGAGGAGCTGTAAGTGTGACATCAGGTGACTTTCTGCTTCTATCTGTGAGATATGATTTTATA----TCCTGTGTTTTATGTACCATCAAACATCAGATTGGTCCCAGTGATCTCAAATGACAATAGACTTTATA-ATTT----GTTAGCTGCATGGGAGAA-ACCACTGTGAGTGGTACATTGTACAGCATTTATATAACAGTACAGCCTTTAACACTTGGATTAtctattttaaagggaaaaatt--------------ccTGTGTAAGAACAGGATGTGTAAGAATTGTGACTTTCTGAGtatgaaatattaagaaaaaattattgaaatgctTTAGTTCTCTTAACTAGTTTGGTTCATTGTCATTGAGCCTAGGTA--------------------CCAAATCGTTATAGTTAAATCATTTTAGTT-------TCATGTGAGTGAG---------------------------------GTGAGAATTATggccaaa-------------------------------------agaggaaaaaataatgtt-------------------------------------------------------ttgagaACAACTGGAATATAGTCAAGGAACCCAAACACCT--------------------GAATGTAAAAGATGAACATATTTTATATTCAAGTAAAAGAGTTTTCATTAAAAT--TGTGATTATCTCACATGTCATTGGTCAGACAAACTCAATTCCTGCAAAATGCCTTTATATGGGATTTACTGCA--------CTATTTTCCATATTAATACGGTTTTTTTCCTGAGGTCCTATATTTAGgtacataatttatattatcaaGAAATATGGAT--TAGCATAGTTTCATAGATTCTCTTTATAGTTGCTTGAAAGTTTCCAAATAAATTGC--TCAAAGA----CAGAACATCAGAACTGTTCAACCCCATACttattttaaggaagaaattaacacTTTGGTCCCTTATTTGCCATGGAAAGAGATAATGACTTTCTCTAGGAAGATTAGAATCTAACCAAACACTGTAGGCTAAATATAGCATGCAAAGCCTTGTGCCATTTGTGAAAATGCTATCAGGGAGAAAACCCAAGGGCTGAATTTCCACACTGTACTTTTTAGGTACACAGATTTAATTTAGAGATTAtggtttgaaaataaaatttattgtatgAGTGTTTTTGGCTGATAAGGAATTGATTTCGTGACTGTGGTAGACATTAATTGAAATATCTGGCAATATGTCTGGACTAGGTTAAAGGAGTCATACACACTTGGAACCATAGTATTCCTCCACACTGAAGGCAAAAGCTG-ATCACTTGATTACTATTACAAGGAA------------------------CAAA--AAGATTTTTTGC---------------TTTTGGGGGACGAAACATTCCCCTCT---------------ATTG---------TATAGCAAGGAAA-----------------ATTTTATG-------------TAG-----------------------TTAATCTTATATTTA---------------------GTTAGCTCAC--------TATTGA---------------------AAGCAGA---------------GTTTTTCAGTCTTATTTCAGAATGtta---------------------------ttgaatattaaaat-----------agtact---------ttatattttctaatat-ttaaaggTTATAGCTGTGAAaccataaataagaaaatgtgtgCTGGTGAGCACACTGAGACATATCCAAAG----GCTATGTGTTCTTTTAGTTAGTCATTATGTTTTTAGGATATAGCTT-----ACAGATGTTAGAATGTAGGTGTATTTT----------------------TAAC-------TTGTCAGTATTGTCTGTATAACTCAACTGCTAGCTCATTTGA-AGTGTATGATTCTAGTTGCATTTACGCAAGA-AAAAGCGTCTTCAGAAAGAATCAAAACAGTttgcaaaatttataaaatgatcaGTAGTTTCCTGAATGTATACCGTTAATGAAGAGTCTTTCAATTTGACTAAGACCAACCCACTGCCTGAAAGACAATTATCCA------GACAAATGCAAATCtcctgtttacttttcttttctgtagATGATGTCAGAACAAAGAGCTAGATCATGTTTGTCAAATGACTTTATAATGTTGGCCCTGTCCTGAAGAAGCA----------GTTTTAAAGAACTTAATACTAAAAGCATAATTGAAGGCATATTTAACACTTAAAGCTAACGTTGGGAAGAAATATGCAGTGTTCTGtgcattttttttaataattaaagttGAT-CTACCTGGACA-GATCTATGTTAGTGAGAGTAAACAGAAGCTAAAGTAGTTGTAA----TGCTTGATAATTTTGCCTTCTTAGCACATTTTTggcattcagaaataaaaaaaaagttatatatcCCTTGTATGGAAAAG-----ATTCTTATGACAGGTTTCCTGGTGCCATATGGAGGATAAGTTCTGAAGATTATTTCTGGACCTTTACAAACACAGAAACCTATTGAGAATACTAAAAAAAGAGTACAA--CAAATCTCTGTTGTATACGCAGTGCAGGAAGGCAAGCAGATGCTTGATTATAGTGTTATG-TTGTTCAATTAATGTTATGTTCATTGCAGCAATTCCATAATGGAATACCATGTGGAGAAGAATGGtcttttaaatgtgttttctacTTTGAGTTTCAGTTGATTAGTAGACAAATATGTCAGAAAATTTTCAGTCAAGGTATTAATTGTTCTTTTATAGTCAACAAGCTCTTTATACTTATCCTTTT----AAAATCAGAgagttgctttaaaaataaa

a score=20744
s chr3           151475213 579 + 160039680 ttttgtttgtttATTTAAGTTTATACTAGGAATAAAAATTTGGAAGCTTTTCCAATGT-TTTGAAACTGGCTTCTGAGGGGGGAAGGGATAGCTAAATCCAGAGGGAAAC---AGAAATAAAGCAGAGGAAATGACATTTCAGAAAAAATGCAAATGCTGAAACCTAAGGGTACCCACCTGTCTGGCTTCCCTTAAAAAACACAGAAATATGTGCTGTGCAACTGAGTTCTGTCTGATGTCCCTAGCTGAGAGGCCTGCACCTGGCAAGAGCTGGTCCACTGGCAGCCATAGTCGTCAACCAAGCTTCTCACGTT-TTCCTGTACCCTGGGATAGCCAACAAGAACAGATGGAG-GCTGCTGTAACATAAAAAA----CATTTGCTAGGAACCA--GACACAGATGCATGCCGGCCGCAAAGTTGTGTGGAAAGTTTTATAATTTGAGAAATTAATCATAAAATAGAACCATTGCTGAATCAGGAAATGGAATTGCA-AGGACGGAGGAGAGTTTTGATGCTGAGCAGACTCCATTTATGAA--ACCAAACAGTCAACACTACTTTTCAC-CCTTTCAAACAATGAAATTTGTTT
s HiC_scaffold_1 138076237 570 + 233722169 TCTAGCTTGTCt-ctaaaatacaaactaaaattaAGAACTTA-----TTTTGCAAAATGTTTGAAACCAGCACCTACAGCATAAAAGGA---CTAAaccaagaaggaaaacaaaggaataaagtagaagaaatgatatttgaaagaaaatgcaaaagct-aAACCTAAGGGTACC-ACCTGTCTGGCTT----TTAAAACTACAGAAATATGAGCTTTTCAGCTGAACTCAGCCTGATGCTCATAGCTAAGAGGCCTGCACCTGGCGAGGCAGAGTCCACTGGCAGCCTTTCTCCTC-----ATCTTTGCACACTGTTGGTGTACACTGGGACAAGCAGCAACAACAGATGGAGTTCTGCAGTCgtacaaaaaaaaagcacttgCTGGAAACAATGTATGCAGATGTATGTCAGCCATGAAATTGTATGAAAGATCTTATAAgttgagaaataaatcagaaaacagaaccattacaaaatcagaaaacagaattgCGTAGAATTTAAGAAACCTGCAGCAATGAGCAGATTACATTTATGAATGATCCAAC-----ACTCtttttttcacatctttcaaatatttatttttattt

a score=54257
s chr3           151475940 4442 + 160039680 [encoded data, 4808 characters]
s HiC_scaffold_1 138077553 4190 + 233722169 [encoded data, 4808 characters]

a score=90042
s chr3           151481918 5611 + 160039680 [encoded data, 6131 characters]
s HiC_scaffold_1 138085667 5561 + 233722169 [encoded data, 6131 characters]

a score=14918
s chr3           151488110 923 + 160039680 TATTGGGGGAGCCTAACAGGTAATGCTGTGAATTA-AATTAAAGACAATTTTAATTATGTTCTCAGTTTTCTAAC-TCATCAGTCTCCAGAAAACGTCTGT--TGTCACCTCATTCCAGGTTTA---------CTTTTAATATTCTCCAATTC------AAAGGAGACTATTT-------------------CACGGACAACAGAGAAAACAGACACACACAAACAAATGAGTAGTATGATCTTCAACATTGTAAGAGGAGTA----ATCATTGTCATTTAAAACCCTTTCTTCCAACCTTCATTACTCCTGAGATGCTACAGAATGGGCCGAGGCCTTAGCTAATGCCCTTAT-AGCTCTTCTAGGGAGTTTGTAAACACAGTAACTGTAGCAAAACCCAATCCTCAG---TCCTGAGCCCTATTTTTTACCTGTTTCCTATGATGGATTATTCAGTGAAAAACTCATTCTCTGGAAACAATGTTATTTCTCACCAATTTT-GTTGACCATAAGGATTATGCTTGTCTGAGAAGCTACTGTGCAACTCCATCCACTTTCTCGGGTTCTATAGTAATTTTCATTGTTCACTTTGATAATCCTGAGGGAGTTCATACAGAG--CCATAAAGCTAATTTCTCTCAGTATTGTTGT--CGTGTTGTCATGTAGTGCTTCTGATA-GGCAGCTCAGTTAAATCTTAAATGTGACGTATGTAGCAATCGTAGATATTA-GATATCGATTAAAAGAAAATGAAGTTTCCTACTCAG----AGCAAGAAGTGATTCAAGAATACTTTAACATTGGTATGTACTTAAGTGCAGCCCCTCACACATGAAGTGATTGTTGCAGGTGGGCGT-GGTGAG----AGCACTGTGAGTTATATCCAGTCCTCTGGAATCACAGCAAAACAGAAAGTCAGGTACTCCGCTCCCAGGG----TGAGTTGAAAGCCAGCATGGCG-AAATGGGGAAACTTAAGCACC
s HiC_scaffold_1 138094791 947 + 233722169 TGTTGGTGAAATCTAACTTGTAACAT-----ATTATAACTTAAGACT-------TTGtgttctccattttctaataccttTTGTCCCTGGAAAAAAACTGTATTATCATCTGATCCTATATTCATAAGGAGCTCTATTtatctctttgtatttcttacaaATAGAGACTGCTTATTCTGGAAGAAATTTAATTACAAACACCAGAGAAAACCTACATACTCAAA--GATGACAAATAT-----CCAGCTT----AAGGGAGTATAGTATGTATATAATTTGAGAC---TTCTCTCAATACTCATT------GAGATGTCTTATAATAATCCTAAGTTTTCTTGAATTCTCTTGTTAGATACATTATTTAGTCAGTAAACACAATAACTAAATCAAAGCATAATACCTAGGACTTCTG--------TTTCTACCTGTTTTGTTCGATGAATTATT-AATGAAAAACTCATTCTCTGGGA-TAAGGTTATTTCTCACTAATTTTTGGTGTCCTTAAGAATGTAGTATCTTTGAGAGACCATGTGGCTATTTCTTTTTTACCCTCCAGTCCTATAAGAATTTTTATTGTGTGCTATAATAATTCTCAGGGAATTTGAACAGAGAATCAGAAATATATTCGCTTTCTCCATTAGTATACCACCCTGTAGGAGATTGCTTCTGATGTGAAATTTTAGTGGATCCTTAAATATGGCATGACTGATAATTATAGTCATTATGACCTCAATAAAGAGACAATGGAAAACTCCAGTTAGGAACAGCATAAGGCCAAAGCAGAATGTTTTACCTGTAATTCATACCCACTTGCTGTTTTCCACAAATAAATTCACTTCTCATGGAGATTTTGGGTGAAGTTTAGTATCATGCAATCTTTCCTCCCCTCC-GAATCACTGTGAAACAGAATGTCAGATGATCAGCTCTCAAGAGCCCCTAGATCCCAGCCAGAATTCCACAAATGTGGAGACTGATGCACC

a score=10435
s chr3           151492148 299 + 160039680 tccagagactgctccacaTTTTCTTGTATTTGTTGCTCTGAAATCACTAACCACATGTAATATTGTTA-TGAGGAAGCAAACGAGTAGAAG----AACACTAATGTGAGAAATTGCTTCTGAAAC-ATTTGCAGATATAGATGAGTGCAGCGAGTCTTCTGTCTGCGGTGATCATGCTGTGTGTGAAAACGTGAACGGGGGCTTCAGCTGCTTCTGCAGGGAAGGTTATCAGACCGCTACGGGGAAGTCACAGTTCACACCTAATGATGGCTCTTACTGCCAAGGTAACTTATAGCCTTCAATCT
s HiC_scaffold_1 138098296 303 + 233722169 tccaaatgtttttccttgctttcttgtGCAGTTCTTTAAGAAGTCACTAATTGTACAAAATCTGGCTACTGAGAAAATAGCCACTTACATGCAGTAAATTTCATACCTTAAATT--TTCAACAACTATTTCCAGATATAGATGAGTGCAGTGAATCGTTTGTCTGTGGCGAACACGCAGTCTGTGAAAATGTGAATGGTGGCTATCACTGCTTCTGCAAACTGGGTTATCAGACGTCCACCGGAAAGGCACAGTTCACACCAAGTGATGGTTCTTATTGTCAAGGTAATgtacattattaaattt

a score=79202
s chr3           151496527 2653 + 160039680 aaaaTGAGAGTGTTCTTTTAGAGGCTGTGCACTTGAGTTTCTAGATAATGCATACCATAGATATGTAGACATCATCAGGATAGGGATTTTCTAGCCTTTCACCCTGGTAATGTTCCTTATAATCTAGTACTACCACCTCTCTAGCTAATGTAAAGGTCTTCAAGAA-----CAGAGCACAAGGCTCTGTA----CTGACTTTCTTTTCTGTGCTTTGAG------TTCCACATTTTCCTGTTGCATTTTTAGATGAAAAATTGGGAACAGCTGAATTTAAGACAACAGCCTGA-TGACATTTTAAATTAGACTTTAATAGCCCCCTTCCTTTTTATTCTGG---------TAAATGGTACCATGCCATTTTGTTATTTTAATAATCAAATTGTAAATTAAAATTGCAGGTTCATTCATTAATCTAATAGAAAGTGTTTCTAAGATGCCAGAACTTGGCTCAacacacacacacacacacacacacacacacacacacaTCTTTGCATTAATTTAAGGTAATGATCTGCACTATTCAGTTTCTTGGAATCATTCCCCAACCTGGCAGCATATTTATATTGTATTTATAACTTGAAGGCACATTTCACTGCAGTGTGTAAAATTTTAAATTAAGAATATAAATGATGTGAGCCTAAAAACCCAGCACCTTTATTACAGTGTCAATATATAGCTACTAAGAATGTCTGACTTAATTCTGTGCAATTTATTACTTCATCCATACT-CAACTATGATGATTGCATATTA-GAATCATAGTCCAAATGTAATATGAACAAAAGTAATCAATCGTAATAAATCTTAAGAGAGTTGAATCACATAATGTGCTGGACCTTAGTTTTCAGTTAAATCACACCCAGAAATGAAGCTTCAAAGAGAAAGTGGGCCCATCTTTC-TCCTCCAGATTCCTTTAAACTGA---GTTATCATCAGTTCAGCCTAAGACTAGCAGGCAAATAATTTTAAGTGCACTTTGAAAAATGAGTCTTTATTAAATTAGAACTAACTGTTACATCTTAGATGATGGGAATAGATTTGCTGACTTTGTTGATGAATCATGCTACTCAGAAAACAATTTAAGAGTACGGCCCATGAATAACATTTTCAATACTCTGCCAAAATGGATTGGCCAAATTAGAGTTAAGAAGTGCATGC--------AGTCGGTTTGTTCTCTCTTTCCCCACATGATGGGATTTCCCCTGCTCTCCTATATCTTGTTTTTTGGTGTGAAATCACTAGCCACATGTAATATTGTTA-TGAGGAAGCAAACGAGTAGAAG----AACACTAATGTGAGAAATTGCTTCTGAAAC-ATTTGCAGATATAGATGAGTGCAGCGAGTCTTCTGTCTGCGGTGATCATGCTGTGTGTGAAAACGTGAACGGGGGCTTCAGCTGCTTCTGCAGGGAAGGTTATCAGACCGCCACGGGGAAGTCACAGTTCACACCTAATGATGGCTCTTACTGCCAAGGTAACTTAT--------------------------------------AGCC-----------------------------------------------------TTCAATCTT------------------------AAACTAGATAAAATATTTATGACACGTTTGTGAAGTGCCAATGAGCTACAGTCCCAACATCTATGTCAGGATTGACT-TAGGTCGCAAAAATAAATTAAGAAAGGTGTATTCTTTTTGCTTAGTGGAAATGGGAGCACGACGT-TTAATGTAGCTCACATTCATTCTTTCTTCCTTCAACT--------ACTTTCTTCCATTTTCAGTGATACATTATCTATTCTGGAACTCAGATGGATTCTCAAATGTTAAAGGATGCATTTTTAATGTTTAAA----TGAACCAAATCATTCAAGTCAACACGATCAGATTAGGAAAAATGGTTTGT---AGACTCACTGTGGAATGTGTTTTCTTTTTCTGCAGAAAGCATGAATTCAAATTGCCACTTAGAGCATGCCTGCATCGCTGCAAACATTAATAAAACTTTAAAAAGAGTAAGTAGACACTTTAGGTTGAAATATATTTTATTTTGACATTTTGATCTCAGTTGGAAAGTGCTACCAAAGTTCTACTCAAAAA-----GATCAGCAGTTGGACCTCGTGTAGAACTGAAACTTTTCACAC------AGCCATGTAT--GACTTACGTTGCAGATAGAATTAATTC-GAAACTTCCAAAGCATGATAGAAGACTTTATCCTGTTTAATTTATGCTTTTTTTTTCATTATTGCGA---------------GTATTGGAGAATTATTTTCAACATGAAAGGAAGTTGTTGGATAAAATGGTAAAAACACACATAGGCT-CAGATCCAGTACCACATTCCAAGGAGACATCGTTTAATGCAACTAGA-TTCTGTACTTCAAAGTGAGCACTTCAAAGAGCAAATAAAGTAGGACATTCATAAACTTGTTGTTATGTGACCGAGACTGGGGATCACACCACGAGGAGAGAACTCTCAGCAAAGCTA--CTTCCATTTTATCACAAGCTAAGGA--CCGCTGTGGTGGAACATAACCAGAATCAGATTATTAATTAATAACTTCTTACTTTTGATATAAAAACTTGTAAGAACTAATAAATCTAAGTATTGGGAAAGGTTTACTGACTAGGATA------TATGCTGCAATAAGG-AGGCTATTTTCAA--AATTATTTTTTT--CAATTATCCCTTCAAGTGAGCTCTGCTTGTCT-CTGAAGTATACTCAATAATTCCC-AGTTACTTGGGAATTATTTCCAAATAAATTCTTTTTTCATTGCTACATGTCATGATTTCA
s HiC_scaffold_1 138097155 2780 + 233722169 AGAATAGCACTGTTTCTCTAGCAGCACTGCAGCTGGGCTTCTGGGTTGTAAGTATGCTGAATACACAGGC-TGGTCAAAA-GGAGATTTTCTAACCTTTTTTcatgttaat-tcttttaaaatctagTATCAGCATCTTCCTACCTAATGGAAATTTCTTCTTCAAGCCTCCAGAAAAAGATTTTCTGTCAATTCTGATTTTTAGCAGTGTGATTTTAGATGGCTTTCTGggctttcat-ttgtatttttaagtgaGAAATTAGGACCAGATACATTTAAGATAACTACCTCAGTGacactttaaattacattttgattattcccttctttatatttataaaacactACATATATGATGCCat--catgttattttcttaaaaatcaaatttaaacttaaaattatagatttatttattaatcTAATAGAAATTATCTATGAGCTATTAGAGAGAGGGTTTAGGCACACAAAAAC-------------------------TTTACATG----CCAAGTAAGAATCTGCGCTGTGTGGTTCTTTGAAGTCATTACCTATCCTGGCAGAGAGTTTAAACTGTACTTATAACATTAAGGTTTATTTCACTGtagtatataaaattttaaattaagaatataaatgaTGTGAGTTTAAAA-CCTAGCACCTTCACTACGGCTTCAATATATAACCACTGAAAATCTATGActtaattctgt----------attttatctatATTTCATCTATGGTGATCGTATATTAAGAATTATACTA-AATTATAATCTTAACAAAAATAGTATGTTGTAA---ATTTTAAGGGAGTT-AATCACATATTCTGCTACATATTAGTCCTGGGTTAATGTACATACAAAAAT-AAGCTTTGTAATGGAAGTGAGTCATTCTTTCATATTCCAAGTTGCTCTGAACTGAATTGCTGTAATCAATTTATCTTAAGCCCAATTgacaaataattttaagtatatttttaaaattggatcTTTATTAAATTAGGGCT----GTTTCATCATAAATGATGGAAATTACTTTAATGACTTTGTTGATCGATTATCCTACTTAGAAAACAATTTGAGAGTTTGGTGCGTGAATA---TTTTGTATACTCTGTCAAAATAGATTGACCAAGTTAGTGTTAAAAACTATGTACCATTTAAAACTATGTTTGCTTTgccattttccaaatgtt-----tttccttgctttcttgtGCA--GTTCTTTAA---GAAGTCACTAATTGTACAAAATCTGGCTACTGAGAAAATAGCCACTTACATGCAGTAAATTTCATACCTTAAATT--TTCAACAACTATTTCCAGATATAGATGAGTGCAGTGAATCGTTTGTCTGTGGCGAACACGCAGTCTGTGAAAATGTGAATGGTGGCTATCACTGCTTCTGCAAACTGGGTTATCAGACGTCCACCGGAAAGGCACAGTTCACACCAAGTGATGGTTCTTATTGTCAAGGTAATgtacattattaaatttaatgtattttaaaagatctacATAAAAGCCTGGGAatatgactcagtggtagagctcttgctttGCATGtacaagaccctggattcaatcccagcattacaaaaaaaaaaaaaaaaagacaatataaaatatttactatatagtTGGGACGCATCAAAAATCTACACTTTTGAGAAATGTGCCAGCATTTTTTATGgcttataaaaat---ttaagaaaaagtcattttttcttgttaatgAAAGATGTAAGACAGCATGTTTATGCAATTAGTATTCATTCACCGATCCTTTAAATTACCATAGTCTGTTTTACATTGACTGTAAAACATTACATGGTCTGAAACGGAATTGGAACCTCAAGCATTAAAGGGTGTGATTTC-ATGTTTAAAAAGGTGAAGAAAGTCACTGGGATCAATGTGATCAGCTTGGGGAAAATGGTTTTTCTAATactatttatg----------tctttttctacAGAAAGTGTAAACACAAACTGCTATTTAGATAATGCCTGTATCACTGCAAATGTCAACAAAACTTTACAAAAAGTAAGTAGACAAGtt------aaatttctcttgttttgcCATCCTGGTCTCAGTT--AAAATGTTTCCAATGTCATATTCCAAAAAGTGTAACCAGTGGTTAAACTTCATGTACAGATGAAATTACTAACATATAGAGAACTAAATATTGTACTTGCATCATGGATagaattaatttggaaaattacAAAGCATTGAAGAAGACTTTTACACATGTACTTGATG-TTACTTTTACCTTATTCTAAGTACCTTACCTTAGTGTATTGTATATTTATGTTCAACAT---AGAAAGTTACTGAATTAAATAGTAAAAATACACTTCAACTACAGACCCATTCCCCCTTTCTAAGAAGGCATAGTGGAGTGCAACtagatttttttacttcaaaGTGAGTACTTCAAAGAGCCAATAAAGTcaaacattcataaaattattGTCATGTGATTGCAGTTGTGGATCTCAACACAGGCAATCAACTGTCAGCTAAAATAAGTTTCTATTCGCTCACATAGTAAAGAATTTTCTTTGGTTGATTAAAATATAATGCAAATTACTATGTTACAAtttattatttagaatatcaatatCTATAAGTGCTAAGGAGTTTAAATGTTAAGGTGACCTCATTGGCTAAAATATAATTCTATATTGGAGAATGGAAAGTTATTTTCAACCAATTCTTTGTATGAAAATCATCCATTCAAATATGATCAGAGTCTTTGCTGATATAACCTCTGTGCTTCCTAAGTTATTTCCCAATCTCTTGC-AATAAATTCTCCTCTCAGAGCTGTATGTTATGGCTTCA

a score=64757
s chr3           151499976 3307 + 160039680 TAAATCTTATGTGTAAAATCCTCCCACAGAAATGTGA--TTCTTCC--TGTCTGTAACTCACTGTTTTCTCAGATTGGACCCATAACAGAACAGACAACTTTACTCCAAGAAATCTACAGAAATTCTGAGGCTGAGCTCTCTCTGATGGATATAGTCACATACATAGAGATCCTAACTGAATCATCCTCACTACTAGGCCACCCGAACAGCACCACTTCATACAAGGATGCCCACTTCAACTCAACTCTTACTGTGAGTAT-TTAATCTTCAGTGGAGGTGACATTTAAATTGTTTCCTGCATTTCTGTTCAGTGTGATATAATAATATTTTTAAAGGTCTGGTTTTCCTTAAATAGGAATTTGGGGAAACCATCAATAATTTTGTTGAAAGGAGTACACATAAAATGTGGGACCAGTTACCGACAAATCACAGAAGACTTCATCTCACAAAACTGATGCACACTGCTGAGCTAGTCACCTTACAGATCGCTCAGAACACCCAGAAGAATTCTCAGTTTGATATGAATTCTACTGACTTGGGTAAGGCCTGGGAGTAAAAGGTCTGCTTCTAAGCAGGAGCATTTACCAAGC-----CCGACAGTAA--GGAGAAGGTCTTGAT-GTGTT----AACTTACACCCAGGTTTTTCAATGCAGAAATGAATGTTGGTTCATAGCACCAGAGCAATATGAAGGAAGAACCATGCTGACAGAAA-GGCGGATGTTCCCCTGTCTTTATTGCCTCCCCTTTTCTAGTCATGAACTATCGATCATGAAAATTAGCAGAAGGTATAGCTCCCTTCTCAAACTCACTCAGTGATCTCCTG------ACATTAACCTACAATATTTACATTAGAAATTGTGGATATAATATTTTAAAATTTCTCTTTGGAAATGCTTTGCCTTGTGATAACATGAGGCCATTGTAATAATGAAGTACAA--TTTTATACTCTGTGTAGTTT---ACTGAAAAAAATACTAAAGTTAGGGTTAATGTTGAAGATGGTTATGAA-CAGTTCTGAAGAAGCAAAGTATTC--TATGAAGAAATCATTCTATATGTCTATATTATATGTTTGGCTGATATCCTGCTTGACAGTAGTATATTGACAGAATGAATGATCATCTCATTGGTATTCATTACTTACCCAATTTAAGAATGAAAAGGATGAAGTTAATATGTAGGCATACTATGCTTCTTTGTT-TCTCCATAAAGGACATGCTAATGTACCTCCAAAGTAAATTATTACTCAAAAATCTAATTCTGTCCGTGTTTCTTTCAACAGTTAGTCGTATTTACATTGTGGATAGTTAAcaggtatttccaactttttgacattgtggcaagaca-ttgtcatctacaaagctcacactgagaaacaaacaatccagttgcaaaaataggggaaaaaaaccctgaaggttttaactaagttactattttgggtgatgccatacttatagctttt-cttggtgaatactgcctacaggctgtaggtgaggcagacctACAAGACACTACTGTCCTCAGTGCTTTAGGAACTAAGTGTGGATGCTCTTGCCTGTGTAGA-CATTTTCATTTTTTTTTTTTGAACTCAGTAATGATTAGACTATGAACTCAATAGTCAACGGAAAAAAAAAGAAATTCCGAGGTTTCTATTCTTTGGGAGACTGTGCACTGCACTGTC-CAAAACTGAAACGAAAGCATATCCAATGCGATTGTCTCTA------AATTT--AGAACTTACATTGCTTAACCTAATTTTCTTATTTCAGCTCTCAAGGTTTTTGCTTTTGATTCAACTCACATGAAGCATGCTCACCCCCACATGAATGTGGATGGAGGCTATGTGAAAATATCCCCAAGGAGAAAGGCTGCACATGGCACAACTGGTAGGGTTCGAAC-ATCTTAT-----GCATCTTCATGGATTTCTAATAAGTACTCGATATGCACTTGGCTATGTCACAAATAT-------ACAAGCAATTTCCTATAGAAATATTTAA-GATCATATACATGCTATC---TATGTTTATACTTGAGATTTCATTCAGACAACACTACCAAT--AATAATT-----GAAGTTTAACCAATAATATC------CTGGTTTCTCATCATGAAACCAAATTTGTGATTGCAGATAGGAATATGTTTAGTCTTTTCTTTGCATCCACCCTTCCTCCGCTTTTGTATAGTAAACTCTAAGTCATGCAGCTTTAAAAAAAATAAGAGAGAAAAATAAGACAGAGAGTGCTAGTAGCAAGCAATTTCGTGATTATCTAATTTAACAATCTCATTTGGTAGATAATGGAACTAAGGTACAAAGTTAATGGAGTTCTCCCCATGTTTATCAGCAAATAGTTTCGAGCAAAACTAGGAAGGAAGAAGCTAATAAAGAAATCAACTCAACAGACTTTTACTTGTCACCTAACTGGGGTCAAGCATGTTCTTACTATTTTAATTTATATTACCATTCCTC--TCCTCTTGGAGCAATGTGCACAGAAA-ATTTCTCCATGTCCTAGCATAACTTCTGTGGTAGTTGTTCTCACATAGGTAAA--GATATATTACTAAGGGTATACATGAATTGGGGCCTTTTCCC--AGAGTCTGTGG-TAATCACAGATATAAATGAAAACTGTACAGTAAATACACAT------------AAAAACTGGTTTATTAACAGATAGACTTTATTTTTAATGACCATTCTGCA-AGCTAGCCTCGTGACATTGTC--TTTGTTTTGTTTCAGTTCATTTTGTTTTCCATTGCTTGGGAATTTATTTTTCTCTATTCA---TTATCCTCACTGATTT-----TTATTTTTCTGGTCAAAGTAAGAAACATGTAGTTACAAAACAAATGAAAAATAACCATGATGCATTGCCACTGAACCCTTAGCGCTTG-TGCTGCTAAACCATACTGCAATCAATGAAGCATACATATAGTATTTATGAATATATTCACGGAACCTGTTAAACAGTTGAAATTTCAAAGACAATTTTAATGGTGTTTAGAAGTCATGGAAAACA--TTGAAAATACCTATTATGGTGACAAATGATGAAATTGTCACAGAATTAAAATCTCAGAAAGATGCTGACTGATTGTATGGTAGCTTTGTTATGTTTAATGATGGCACACAGAAATGGACAGTTG-AAGGGGGTAATATCAGATCTCAATAAGGCAGACGGAGAAAATGGCTTTTCCTCAAGGTTAAATCTTAAAAGA--AAGAGCAAATAT-ACAAACTGATC-TCACCTCCCAGTGATGTCTGTATGTGATTTCACTTCT----GAAATTCATTAGAAAAGA-------------------------AACACAGTACCATTGGTAGGATTTCAGAGGCGATCAAGAGACACAGA-TGGGTTTTTACATTATTTTGTA
s HiC_scaffold_1 138099964 3056 + 233722169 TAAACTTTATTCTTACAAAGCTACAACAGAACTCTgaattgcttccattttctgtatttc--tttttgctcAGCTTGGAACCATACGAGAACCTGTGACTTTCCTACAGGAAATCTATAGAAATTCTGTGACTGATATTTCACTGATGGATATAATCACATATGTAGAAATATTATCTAAATCATCCCCGTTATTAGGTTATATGAATAACACTATTTCAGACAAGGACACCCTGTCTAATTCAACTCTTACTGTGAGTATGTTTAACTTAGATATA-TTGATCTTTTAACT-TTTCCTGTATTCATGATGAGTAGGGGATTccagtatttttaaatgtcatgcttt-ttaaaataggaatttGTGAAAACCATgaataattttattcaaaaggATACATTTAAAATTTGGGACAAATTATCTTCAAGTCACAGGAAAACCCATCTTACAAAACTGATGCATACTGCTGAGCAAGTTACCTTAAGGATTTCTCAGAACTTCCAAAAGATCACTCAGTTTGACACAAATTCATCGGATGTAGGTAAGCCC--------AAAGGTCAATTTCAAAGCAATAGTGTTTTCCAAACATTTTCAAGAAATAATGGGGTGAGTTTTTAATAGTGCTGAGGAAATCAGTAGTACTTCTGTCAGTGTAGAAATGAATGACAGCTCATATTACAAAAGCAATATGAGTAATATACTCTACTAGTAAAAAGGGTTAGTGACTATATATAACTGTTACATC----TTTCTGACCATG-GTTATC---TTTGCTAATTCTTGATTagtat----------ttaaatacatttgatGTCTTGCTAGGAACTGCCTTGACCAATGATAGTTCCAGTACATTTTCTGGATATGgtatatttaaatttctctttagaAATCTTTTGCCTTTTGATAAGATGAAGCAACAAATATAGTAAATCAGAAAGTTTCCTGCTTCGTGCAATTTCACACTTAAAAATTTTCAGAACCTTGGATCAA-ATTGAAGATAACTATAAAGTCGTTCTGAGGAAACAAGATACGCAGTCTGAAATAATTGTTATGTATATCTTTATTACATTTCTGGGTCATAGCCTGCTACCAGGTAATAGATGTACAAA---AACTGTTATCTCATCAAGATTCATCACTTGTCAAAATTAAGTCTGTAagtattgtgatttaaaataaGATGCTCTGTATTTCTATGCTGTTGATGTATGAAACAGTGGAATGTATTGgtaaaa-aaattatcattc-aaaatttaATTGAATTA----CTCTTTAGATA---------AGTTAAATTATAGATAA-------------CATACTCTAAGACATTAC----AGATACTTGTTTT---------------------------AATTCAGT------AATTTAGTACACCTACCCTTGAG--------TAcgtacatattt------------------tatcttttacttgA--------GTCAACAGAGAATAAACCATGAGAACTCTACAGATATGAAAATTGTcagatttttaatatataaattatactgtCCAAACATGTTCAGagtatgttcattttatttact----atCAGTA------agattttgaa--------------gtacaaaaatgA---------------------TGGGTGA----------AATTGtctctaaac--aaataaaaatg--------gtgaTTATGTATATTAACTAATTTAGAGAACTGATGATTTTTA---TGGTTTTC----TTCAGCtctcaaagttttcttttttgattcatACCCTGTGAAACATGTTCATCCCCAATTGAATATGGATGGAGATTGTATAAAAGTGTTTCCAAAGAGAAAAGCTGCCTACAACTCAGAAGGTAGGATATTAACAATCTTGCATACAGTATATCAGTGAACTTGCAATAAATACT---TATTAACTTGATTATATCATAGGTATTAATATCATTTATGATTTGCTATA-AAGTATATGATGTTTATAAACATAATATCAAATATGTGTA---TTgagatttt----------catttctaataaaatAACTCAAGAGAATTTTAGCTGACAATATCTGACTGCTGCTTCTTCATCgtggatttaaatttgtgat----------------------------tttg-----------------------------------------------------------tgaaaaagaaaaat---ataaagaat-------------------------------------------attttatagataataaaACTAAGATGCAGAGTTAATGGATTTGTCTCTGCACTTGCAATTAACTAGTACAATGCAAAATAGTAGAGGAGAAAGCTGACAGAAAAATCAACCAGGCAAGCTTTC-CCTGTCATTTAGCTAGAGTCAAGAAAAtagctattattttaattta----actgTTTATCTGTTCTCTTAGAGAAATGCACTTAGAAATATCTCTGGGGTTCATAg---aatttttgttgtagtt-ttctcATATAGGCAAATGTATGTATTACCTAGGAAAAACatgatttagaatattttatcaaAGAATATGTGGCTTgtcataaacaaaatgaaaaaatatacaacATACATATATCGTCTCATGTAGAGATACTATTCTGTTAAAagataactttaaaattaaaaaaacacagtgTACATTCATTCTCAGAAgattgtcattttgttttgttttcattag-----------acTGCTATGGAATTTTTTCCTCATTCGTCAATGTTGTCTTCTCCATTTTTCCTATTGTATTCTATGTAAAACTAAAAAACATAAGATTATAAGACAAGGGGAAAACAACAGTCAT--AGTACCACTGAATCTCT---TCTTGTTACCACTATACCATATTCTAATTTACCAAAAGCACATACAGTATTTAGAAACAAAGTCAAAGAAAACATTAAACTGTTGAAATTTCAAGTTTAAATTCAATAATGTTTA-AAGTTGggaaaaagatgttcaaaataCCTGTT---GTGACAGATGATGAAA---------ATTTAATATCTCAAAGCTATGCTGTCTGATTGTATGGtagctttgttatatttaaagATAACACGTATGCAGTGACATTTGAAAGAGAGTAATATGAGCTCTCAATATAGCAGAAGGACAAGATGTATTTTCCTCAAGGTTGGATCTTCAAAACATAGGGACGAATCTAACAAATTGATCATTTCTTCTCAATGAGACCAACATGTGGTTTCATTTATTGACAGAATTCATTTAATAAGACACatgcattatttaaaatacatataatacagTACT-TTAGTAGAAATATGGGGAGGTCCATGGGGCTCTGACTGgattcttaatttgttttata

a score=19586
s chr3           151507225 717 + 160039680 TCCAATCTGAGCTTTTATGATTTCCATA-GAGTATAATGTCTGTCTACTGAGTTTTTGT-----TTTGAAGAGCTTTAATACAGTTTCATGGCATAAGAATC-CACTAACTGCATTTATTTGATTGACAGGCAATGTAGTAGTTGCATTCCTCTGCTATAAGAGCATTGGTCCCTTGCTATCCTCATCTGACAACTTCTTACTGGACACTCAAA---ATGATAATTCTGAAGGAAAGGAAAAAGTCATTTCTTCAGTGATTTCTGCCTCAATTAGCTCAAATCCACCCACATTATATGAACTTGAAAAAATTACATTTACACTAAGTCATGTAAAGGTAAGTTGT-TTTCTGGTATT---GCTTAAAATGATTGTACAATCAGTGAGCTAGGATATACTTTGCTGCTGTTACTTTAATTATATGTGAATTTTAGAGACTATGAACATTGAAAATTAAACTAAAAGGGTAGTGTAGTTTCGATCCTTTCTTCCTCTGAGCGATGGGAACTGAAGCCATGTCTTTCTATTCTAAGCTTGTGCTCAACCAATGAGCTGCAGCCCCAACACTCAACTACTTTTCTATAAAATACTTTGCATTTCGAGTTCTCCTCAAAGTTTCTTGTCAATACTAATGAG-TCACATGAGAAATGTGCTAGAATTAAGCTGTATTCTGCTTTCATTTTTAGTACATTATTAGTTTTGCCAGTTTCTATGCCCATATCTTTAAGAAT
s HiC_scaffold_1 138105448 624 + 233722169 tctaacgtaggactttgtgcttgccagacaagcactatatctgt----tcagtttttatgtttatttcaagatcttaaatacttttttgttttatgagaatTTCACTAAGTGCACTGATTTTATTGGTAGGCAATGTTGCAGTTGCATTTTTATATTACAAGAATATTGGCTCCTTGCTTTCATCATCTGACAACTTCTTATTGGATCCTCAAATTTCTGACAATTCAGAAGAGCAGGAAAGGGTCATCTCTTCAGTGATTTCTGTCTCCATTAACTCAAATCCACCCACACTGTATGAActtgaaaaaataacatttacattAAGTCACATGAAGGTAAGTTGTACTTTTGGTGTTTGGGGTTAAGGTTGTGAGACATTCATAGAAGT-GGACAT-TTTTAATG-TGGTATATTAATTACATGTGAGTTTTAGAATTTAAAAGCA--------CAGACTTAAAAATTATTGGAG------------------------------------------------------TAAAGttgt-ttcaataaata--------------------------tttctatgaaTTA-TCTGTATTTCCGGTGCTTTTTGAAATTTCTGATCAATATTAAAGAGCTTACATATTTGATTCTCTGAAATTGGTCTATA-----CATTAGTTTTAAGTAtacca-taattttttaaatttccat----atat-tttaggaat

a score=64087
s chr3           151508724 2367 + 160039680 TATCTTCTAGGAAGAACCTTTTTGAGCTATTTTCTATTTCATTTTCTTCTTTCTCA-TTTACTTTTCTCATTTTATGTT--TTTTATTTACAAT-AGCATGTAAGACAAATAA---AAATACACATT---GTTTTGGTCAATATTGTATTTTTTAA-----TATAACTAGCAAATGTTTGAGAGCAAATAAGTACTTGCTGAATAAAGACAGATGATGAATGTCTGTAATGCTTTTTTTTGTTTGAA--ATATACATGATGTCACTTGATAAAAATTATCACAACTCAATAAAATAGAAAAAAATGTAACATCATTGCAATCTGAATTTCAGGTCTGCTACAAAAGAACAGGTCTCATGCCATCATTCGTCAGCATTGGTCCTGTGTTCCTATTAGGCGTCATTCTAATCCCATCAGTGCTGCTTTAAATACATACCAC--------------CATGCATTGCTTCTGATGGTTTCCTCTGTCTCACGGATGGGATATCTGTTTTTCAGCTCTCAGATAAGCACCGGACCCAGTGTGCCTTTTGGAACTACTCAGTTGATGCCATGAACAATGGCAGCTGGTCAACGGAGGGCTGTGAGCTGACACACTCAAACGACACCCACACCTCCTGCCGCTGTAGTCACCTGACACACTTTGCGATTTTGATGTCCTCTACTTCTTCCATTGTAAGCCAAGTGTGTGCTTGTGTTCACAGAGCTGCAGCCATCCTTTGTCATCCTTAACTTTTCTCTTCTTACCCCGTGTCACTGAAAAGAATAATCCTTTTATCTCTTTTCCTGGG---TCAACTGTATGGTTAATGTAATTGAAAAGTCTGCAGTttttgtttggtttggtttggtttggtttggtttggtttgCTCTCTGATTCTTTCCGTCTCTTCTAGGATGTGTGTAATAAGGAATCTTTAGGTTATTTCCTATCAAGAACTTACTTAACCCATAACCTTTACTAGGTTGCATG---AAAGACATATCTTTTCATTA-CTCTGGATTTTGCATA----TTTCAATAGCCATTCATACATTTTACT--------------CTCATAATATCTGGAGATCATTCTCTTTATCATTT--------------------TGATGCCT----AATAAAGTTTGGCACATTTTTACCAAATATGCCTTTAATAATGTAAAACCCCA-AAGATTTTCAAATATAAGA-ATATG----GCAAATATCCTTGTAATAGATATTTT-CTTCAGTACTGTTTCCTCAAAGATG-ATGATGATATAATTTCCTTCTTTGTATCTCTGTTTTAATCTTCATCCAGTGCTGTTCTAAGCTTCTTTATTAGGTCACTAATTTAATTCCATACAATGTTGAAGTCTATTACC------------TGTCATAATACATTTGATTGAGGTAGTATAAACTATAAAGACTATTTTCCCCATTGTGTTAAGGGG--GAAACAGTC-CTATTCTTTATGTGAAAATAAA-------CCACTCA------------TCTCCATTTCAGTCTC----AACCGCACTATTTTGGTCCTCCTCACACCCGA-TTTTCTTTTACCTTTGTTTAATGTGTTTTAGATGAATCACCTCATAGACACAAGTCTTGGACTTACCACTGATAAATCTGTTTTAATTAACCATTTTCCCATTACAATGATGAATTACCTTTTCAATATCATGCAACTGATGGTGATAAC-----ATTATTCAGGCATGTACTAATATATACTATGCTCAGAGAAA-AAAAAATCACTAATTATAGTTCTGTTAGCCTGCCACATGATTTATATCAGATTTCTCTGGATACTAAGTAC-----AGGTT--------TTTCTCACCTAAATGTGCATTTTTATTTTTACATTTTATGAACACTTTGATTAATGCTTCCCTGA-----GAAGTTCATGAGGGATTGTAGTCCCTTTGATATGTCACTAAGTCTTCCTCTTAACCACTCTGTCACTGTTTGCCCTTAGGGGATTAAGGATTATAATATCCTGACGAGGATCACTCAACTCGGGATAATCATCTCCCTGATCTGCCTCGCCATCTGCATCTTCACCTTCTGGTTCTTCAGTGAAATCCAAAGCACCAGGACCACGATTCACAAGAACCTGTGCTGCAGCCTCTTTCTTGCAGAACTTGTTTTTCTTATTGGGATCAACATAAATACGAATAAGGTATGCAGCCTGGCCCCCGCTGCACTTTATTCTC-----TTGTGTTTTCTAACCGAACATGTCACATGAACCATAACAAACACCTCAGTGTGGCAGACATGCTAGATCATTGTT-TTACGTTATCTAGC--ATGTTTGATAATGCTAACATATTTAAATGACACACTCAACAGATCCATTAAACAAAGAAATATCCTTCATTAT-ATAAATTATTGGGGAAAAACAAAATTTTATA----TCAAATAAATAC-----CTGTATTTGCATAAGCAATAAGCAAGAACTGAAAAGGGG----TGGAAATGAAGTTTGTTTAATGAT
s HiC_scaffold_1 138108321 2389 + 233722169 TATCTCCTAGGAAAAGTCTCCTTGAACCAACTTccacttcatttttctccttaccagttcatattttttgtttaattatattttcatctcCAATTAAGATGTAAGGTCAACAGGGCAAGtgcctttttccattttgttcaaTGTTGTGTTTTCACAACATGgataaatggaaaatattcagtaaatcATACATATTTATTGCAAAAAGATATATGTTA---TTGTGTAATATTCTGTTCCAAATGACTTACACACATGGTCTCGTTT------AATTGTGACA------TGGGATAGAAAA---TGTAGTATTGTTACAATATAAATTTCAATTCTACCACATAGCAACAT--------CCTTTACTGATTAtaatttgtttta----acttttaagCACTGTTTTAATCATATGTGTGGTATTTTAGatatgagtaaagaaataaagtGCTGTATGtataactttt------tctcttttttccatcagtaaaatgtttctttttcagaTCACAGGGAAGGATAAGACTCAGTGTGTTTTTTGGAACTACTCATCTGATACCATGAA---TGGTACCTGGTCCCCAGAGGGTTGTgaagtaacagattcaaatgaaacCCACACCACATGCTGCTGTAATCACCTGACACATTTTGCAATTTTGATGTCTTCTGGCTCCTCAATTGTAAGACAGTTTTTTACTT-CATACATAGA-----AATCAATCTATGT------TTATTTTTCCGTTTTT--CCTATGTCATTCAAAAGAGTAaagaattttcttattttccttgggTGTGAATagcatatttaatataatttcaatat-TATACTTCTT---------------------------------TAC------ATTTTATCTCTATCTTTTAGGACATATCTAGTATGGA---TTTAGGTTATTTCTAATTTATGATTTATGTAGTC-ATACTATCCATCAGATTACATGTGAAATGAAATCTTTATtcattgtctcttatttttaaacactGCTTTCAATAGtcatttacaaattttattataaggaCCATTACCTTTTGTTATTGAAAGTTCATT---TTTACCAGTGGCAAAGTTCCACAACCTATGTGATATCTGATCAATAAATTTTAGCATATTTACaactaatatatttttcaaattgcagaagcatataaaattttcaaatatggaATATATGTACTATGCATAACTTCATAATCCGTATCTTACTTCAGTAATATCttgtttatattatataattatataatccCTTATTTTATGTCTCTGTCACAGTGCTCACC-------------------------AGATTGTAAATTTACTTCCATACATACTTACAATCCATTATTAAGTTGATAAAATGTCCTAGTAAATctgcatgaa-------agaaaataaagatgatttttttcaggatattaatcAATCAAAGTAGCCTCTATTCTGAACATGAAAGTAAATGGTGTTCTAGttagaaaaaaagtatttcccaTTTCAAAATCTGTGAAATACACCATTTTGGTGTTCTACACATTCAACTTTTCTCATACCTTTGTTTAATGTATTTTAGATGAATCACTGCATAAAAATAAGACTTGAACATActactgaaaaat--gttttaattaatgaTTTTCCCATTAGAATAATGAATTACCTTTCCAATATCATGAAGCCAATGGTGATAACCATATACTATTAAACTATATACTAATAAATACTATgctgagagagggaaaaaatccCTAAAGACAGTGCTGCTAAAGTGCTACATGATTTATGTTAGACTTTTCTCAGTATTGAGgattttcaaaattagaaaaaatttctCATCTAAGTGCACATTTGTAGTTTTACCTTTTATGAACATTTTGATGAATGCCTCACCAAAAAAAGAAGTTCATTACACGTTATAGTTCATGTGACAAGTGGCTGAGTTATTCTCTTAAcagctttattattattttcccttaGGGTGTTAAAGACTATAATATTCTTACAAGGATCACCCAGCTAGGAATAATTATTTCACTGATTTGTCTTGCCATATGTATTTTTACCTTCTGGTTCTTCAGTGAAATTCAAAGCACCAGGACAACAATTCACAAAAATCTCTGCTGTAGCCTGTTCCTTGCTGAACTTGTTTTTCTCATTGGGATTAATATAAATACTAATAAGGTACGTAGACCCTACTactctctattttattttctatttttgcacTTTT---CTAAACATGCATCTTGGA--AAAGTAAGT-------TGGAACCAACATACAATAGAATTTTTCTTAAGCTATCTTTTCAAAGTTTGATAACACTAACAGATATAATCAACCCACTTCTGAG-TCTGTTAACCCAAA----ATTTCTCTTTATGATGAATTAATGGAGTAAATTAAAACTtgggaaactttaaagaaatgcttgttttgtttttagatggGCATTACATAAAGATTGCAGAGAGTGGACTGGAAATAAAGTTTAACTTATGAT

a score=81461
s chr3           151516850 2500 + 160039680 AATGTTTAATGAAAACACATTCCAAATTTACATAGTAATCTTACAACCAGAAGAAATTCTACAATGTATATTTTGGTGAAATGTATTACTAT----TTGTACATTTTCAATTTTGCCACTTAATCAAGATAT------TCACTTTGTTTTATACAATTTAA--GATAATTTACATTCTTTGAATTTTAAAATGGAAAGGTCAATGATATCCAGATAGAAGTCAGTTTAAACCA--CCATATGGTCACTGAAAAACAAATAATTTGTGGAAAGAGT-CCCTAGTGTATCCCAGAACATTAATGCATAAAAACAACAAATCTCAAGA-AAAGTCAAGAAGGTTAATTCTGTCACAAGGTCAGTTGGCACTTCCCATTGATGAAGTGTAGCTCCTTTAAATAAGCCTCAAGTAGAGCATGTTAAAAACAAAGCTGATGAGATATGAATATTGTAGCATGATCAGAGGTGGAATAAAGTGGCATCCTTCATGAAGAACCTTGACAGATGATACAATAATTACA-------AGGAGAATGTTGCTTATGGTTTCTTCTTTTGTTTGTGTTCTAGTTGGTCTGCTCTATCATTGCTGGCCTGCTCCATTACTTCTTCTTAGCTGCCTTTGCCTGGATGTGCATCGAAGGCATTCACCTATACCTCATCGTTGTCGGCGTCATCTACAACAAGGGGTTTTTACACAAGAACTTTTATATCTTTGGCTATCTCAGCCCAGCTGTAGTTGTTGGATTCTCAGCATCTTTAGGATACAGATATTATGGAACCACGAAAGTGTAAGTCAAGCAGACATTGTGAGCATCTGGAAGACGCTACTGAACGT--TCCATGTGTCTTTAACAAGGTTGTTTTGCTATGGTCCATGCAGAG---TATTCACAGATTCCTATCTCTCGCTTTTCAGATGTTGGCTGAGCACTGAAAACAACTTCATTTGGAGCTTTATAGGACCAGCGTGTCTAATCATTCTTGTACGTATATTAAAAATTGCTATTAAAACTTAAGGACTGGATATGGTTGAGGAGAGC-----ATTCCCA--AATCAGGCATGGGGCTTTGC-AGAAACTGATTTTGACCACT-CTGTGCCTGTCGTTTGGTATCATTTAATATA-TTGCATTA-GAATGGAGACAAATACATAACTTCTAAGTGAAAAGCAATTACCATTCATTCACATC-TCCTGGGGAAGGATAA-TTTTTGCATAGCATACAGAAGGAATGTCAGAAGTATCTGCTGTTTTATCAGCAGCGTCTCTGCATCCTGAAATGCTGGAAGTGTGCCCACCACCTGATAATCTGGCATTTCAAATGTTTACGTTATTTAATCTTTTATCGATGATCGGTCATCTTTTAAAATTAGACTGTCATCTTTAGAGTTTTGTCATCTTTATGTACCCTGTCATCACAAAGTGATTTTAAACTAAATTGCAACATCAGAGACAAGAACCTGCTATTTCTCCCAAGCAGACAAGTTG----TCTATTGATAGTCCTATTTCAACAAGGAAGGAGGCCTTTTAATTCCTATTGAAAGTGCTTTCAAACCTACAAATTTGGCAGGTATTATATGTTCCAGTCTGAATAAAGACATTTTTATATGTCTCACGA-CATTTCTGAGTGCTGAAAGTTTTCAGTAACCATTCTGAACATAATAGTCTGTCAATGAACAAGGGAGTCCTGACGAGATGCAAGAAAGGAACAAATTGTCAGAAAAAAAAAAACTCTAAGAATATTTTGGACAACTTTCTCCCATATGATTTGGCCATAAACTAGAC-TCCCTTTT--------CCTTCCTCTCTCTCTTTATTTTTCTCGGATCTTTTATGGTTGGGATGGAATAGCTAACTAGA-AATGGCTGTGTATGCAACGCAGAGAGGTCTGAAGAG---TTGTTTGCTAGTGGTGTGG---------------------AAATTACACTTACTAATGACCACAAACACTGTTCATAATTCTCAGAGTTAGTCCATCAA-ATGTTTTTAAACTACTGGTTAGATATTTACCATAATTATTTGATCTAATTTAATTTATAGCATTAGTATTAT-GGTCCACGTCGTAATACATACCAAGTGGTGTCCAATTTATGTATCTTTGCTGGTAGTTTTGATATGAGTATTTCATGTGAAGATATTTTATGTGTTCT-TTTCTACTAAT------------------ATCTTCTCCACAAC--------GCAAGT------------GAATAATAATTCTTAATGCTTAGATGAAACATGGAAATCTAAGAATTATGATGAAAACAGGAAGAAATGGGCCTTGCTTCTCTAA-----AGAGAGAA-----TCCATAGGATTTTTCTCTAAATGTTGTAAAGTTGCTTACAAATGAAAATAGATAACTCTGACTCTGGGTGAGCG----------------ATCTAAAACTG-----ATTCCTGAAAACTTCCAGAAATG---TAAGTGAAGTCTATCACAATTTTCTAGTTTGGATTGAACAAATCAATCAACCTTCTGTTCGATTCTAGCATGCTAACATTTCCCAGGTTAACCAGATGGTCTGATTGATTAAGAAATAGGCGAGGCATTTCAGGCATTCTCTAAAACTCA-------TCCTAATTATCATGTg
s HiC_scaffold_1 138111861 2562 + 233722169 AATGTTTAACTGAACC-TATTTCAAATTTGCTTACTAATCTTACCACCTAAAGCAACTCTACAAAGGATATCTAGGTAAAACATATCACTTAGCTATTCTATAAATTCAGTTTTGTCACTTAATCAAGAGATATAATGTTCTTTTGCTTACCACCATTTTACCATTCATTTTCATTCTGTAGTATGAATAAAAGAGAGGCAAAATCGCTTCATAAAGTAATAAACCAAAATCAAATCACATG-----CAAAAGATACTGTATTTGATATGTGAGTGATATGGTTTATC-----ACATCA-----------TGACAAATCTCTGGACAAGGGTAGTAAGGGTGATTCTAGTGCAGGATTGAATAATGCTTAACACTGAAGAaccccaaatttttaaaatcagaagta-GTAGTGCATCTTTAAAA----ACTGACAtgacacaaatattttaatgtgagCATACATTTGATA-----GCATAATTCATGGAAAA--------GTTGAGATTTTTATTGTGTACAGTTAAGCAAACATCGcttacagtttctttctttgatt----tctagCTCTTCTGTTCAATTATCGCTGGACtactacattatttctttttagctGCTTTTGCGTGGATGTGCATTGAAGGAATACACCTCTATCTTATTGTTGTGGGAGTCATCTACAACAAGGGATTTTTGCAcaagaatttttatgtctttggcTATCTCAGCCCAGCTGTGGTAGTTGGATTCTCAGCGTCATTAGGATACAGATATTATGGCACCACTAAAGTGTAAGTTAAGATGATTTCTTGAGCATT--AAATAcaattctgtatatattttgcATATCCTTGAGAA-----TATTGCTGTAAAGTAAATAGAAACTtacttatgaattttatttatttactttctagGTGTTGGCTTAGCACAGAAAACAActttatttggagttttataggACCAGCATGTCTAATCATTCTTGTAAGTATATAGAAAATTGTTGTTAAAATTCAAAAG--AGCTATGATGAAAGTGTGCTTAAAATTCCCAGAAACCAggcattatatttttttaaaaaatagcttggAACACTGCAGTG--TGTCATGTGTTAACATTTTACAAAATTGCATTGTGACTGAGAAAAAACAGAGAGCTTCTTAATTCCATGCAATT-TAATTTATTTGGATCCTTTTAAAGAGGGATAAATTTTTGCCTAATGTAAAAAAAGCAT------------TCTTCACTCATCAGTAGTGTATCAGCATACTTCAGTATTGAAAGTGTGCTGACCAACTGATAATCTGGTATTTCAGATGTTtatgttatttaatcttttatcGATGATCAGTCATCTTTGAAGATTAGACTGTCATCTTTACAGTTTTATCATCTTTATGTACCCTGTCATCACAAGGTGATTTTAACCCAAATTGCAACGTCAGAGACAAGAACCCACTATTTCTCATGGGCAGACAAGTCGTAAATATATTGATAGTCCTATTTCAGCAAGGAAGAGGGCCTTTTAATTCTTATTGAAAGTGGTTTCAAACCTACAAATTTGGCAGGTATTATATGTTCCATTctaaataaagacatttttatacGTCTCAAGAGCATTTCTAAGTGCTGAAAGTTTTCAGCAGCCATTCTGAATATAATAGTCCATCAATGAATCTGGGAGGTCTGACAAGACTCTAGAATGGAATGAATTGTGAG---TGCAGGAATTGTGACAATATTGTGGACAACTTTCTTCCATATATTTTGAACATAAACGAGCCGTCTCTTCTGAATTTgcctgttctgttttactgta-tTCTCTTGAGTTTTTGATGGTTGAGAGGGAGCTGCTAAGAGGAGAAAGACTTGAAATGCAGAGCAGAGAATTTTCAtcaggctttattttttaatagcagGGGTAAAATCAAGTACATTCAAAAACTTACACTTCCTAATCAT--GGAAAATTGTTTCTAATTCTCATAATTAATCCAGCAATACTTTGTAAAACCACTGGCTAGATTTCAGCTAAAACAATTTGAGCTCATTTA--TTATAACTCCAGTATTTTCAGCCTCCATGAGAATGCAGACTGAATGGTCTCCCATTTACGCATCTAAACTGGTGGCTCTGCTCAGAGTACTCGAAGAGAAGATGCTCTAAGCATTCTAATTTTACTGATTCCCTCATGAAAGGAGGAATCATCTCTGATACCGTTTTGTGTAAGTAAAAGTTCTGTGGAACAAAGATTCTGA--GCTTGGATGAAAAAC---AAACTAGAGATTGcaat-aaaaca-gaatatgtgAGCC-TGTTTCTCTAAGTAACAAAGAGAAAGTGTTTTATGAAATCCTCTTTGACATG-------GACTTCTACA---------AGACACACTTAATTTTGGGTTATTGCACAGTAAGGTACATAGTCTATAGATGGAATTATGTTTAAAAAGTCTTACAAATTTTCTAAATGAACATCATTATACTGTTTTAGTCTGGAATTAATGGATCAACTTATCTTCTGTACAGTTTCAGTGTGATAGTCATTCCCACGTTAAACAAAAGATCAAGTTACTTAAGAAATGGATGAAACATCTCAATTTCACTTTAAAACTAAATACTACTTGTATttataatgtg

a score=26361
s chr3           151522120 1403 + 160039680 TTCCTTGATAATCGTG----------AACTGATTTAATAATAAAACCACAGTAATGCATGAGGCAACAAGAACGGTCATGTGGTCTTTCTTTGCGTGCTTGATCGCTCTGTGTCCTAGACTCCCAAAAAAATAAATGAGGAGCTTAATGTCAGAAGAGCTCAACTCAGCCAGGGTA----------AATAGCATACGTTATACAGCATCCATTCTTTGGCAACAAACAAAAGGAAAATCCCAACTGATGCAGGAGAAAATCCTATGACTCTCTCATTCTTACCT--TCTGTGCTAAAAAGTCAAACAAAAAGAAAAATTTTGAAACAGGAGTTCCAAAGCCCCAAATCATATGC-ACTAGAATATGTGCGATCAAATCCAGCGCGAGTGCATGTGCGTGCTTGTGTCGATTCCAGCTTTGGAAATGTTAATGAATATGTCACAGCATTTAATTATGGCAA------AATATAATGTATATGCCTGCTATTATCTAGTGTGTG-----ATTTGCAGTATGCTCTGCCAA---AATAGTTAACTAAAACTGACCaaataaaata---gaaatttaat--aaaaataaatattaaGTTTCTAGAAAAAAAGACTAAGTATAAGTTAAGTCACAAATTTAAATAGATAGTGGTGATGGTTTTAAGACCTTGAGTGAGGTACAAGCCTTGTCTGAGGTAT-------------------------------------AAGGATGCTCTGGAACCCTTTACTGTCACCATCAT------------------------------------CTTGAACGGT---------CAGGGGTATCCTGGGCTTCACATCAGAACATAGAATACACAGTATAAATGAGTAATACCTGAATTA-----------TTTCAGCTCTGTT-GCTTTTGCTCTTCTTGGGTAT--GCTCTTTCAAATA------------TTCATTCTCCCCTGATAAGAGTTAACTGCTAAAATATCTGAACAGCAACATATTCTCCATCAGTGATATACAAGCCCTTCCTCGGATATGAAATTATGAATATTAAGCATCTCTTGAGTCCAGAAATGAGAAACTGGTGACCCCATTGATTC------------TATCTGTGATTCATAGCATTTAAACACTTAACGATTGTGACTGTGCATGAAAGGATC-GACAATACTTTTGAA-AATAAGATGGGTGGGAAAGAGACTTCTAAGTCCTTGCAACAGTGAGCTTCAAGCTGCAGATGATTTCCATATTTT---TTCAATATTTTTAATCTTTAATGTTGAGTTCCTTTAACAAAACTTATATAAGCTGCTAGATTCAAGTAAACAAATATAAAAAGGAGTTCATGAAAATTTAGACAACTTTTAAATATAAATTGAGTGTTCCCATAGATATACATTCAGTTATTGAACAATAGGATTAAGCTAAGTCCA-CAAATACTAATTAGGCTGTGTCCACATAAGGAAttt-------------------tttaattgaaaatcgattc----ttctcacatacaacgcatctgactacagt-ttccccttggtccactctgcccagatcccccc
s HiC_scaffold_1 138117492 1504 + 233722169 TTCCTTAGTAGTTATGTGTGCACTTTAATTGATCCATTA-TAAAACCACAGTATTACATGATGCAGCAAGAAAGGTCGTGTGATCTTTCTTAAACTATTTAACTACTATTTACCCTAGATTCCtatcata-taaatgaaaataacaatgcCAG-----CCCAATACAACAAGGATactgtaaaaggaaaaatacatttataaaagcaTTCACTTTTTGACAGTTAAAAAAA-----ATGCACAATAATTTTGAAGACAATCTTGT---------ATTCCTATTTGTTCTGTATTAAAAA-TTAACCAGAA----------------------TTCGCAGCTAAAATTTACATATTAGTAGAATGTGCATCATCAAATATACTCTGTGTGTAACTTTCTGCAtatcttca------cttttaaaatattggtgAGTATGTGGCAGTATTTAATTA-AGCAAGCTATGATTATAATATATGTACCAGTTGTGATATGGCATTTGCTAAGACTCCTATTACCATTTTCCaggggaaaaataaagtaaaac---------aaaatctacAAAACTTAATTGAATAAGTAGCATTTATTTTCTggagacaaa-acaaaatctaagtaACCCTTCAAAT-------------GGCAACAATTTTATGGCCTTAAATGTGGGACAAGATTTCTTTCACAAATTTCTGTGAATGAATCTGGGAAGACTTGTAAACCAGAGAAGAAATCTGCAGAACAACT-GCTATCATTTTCATAAATCACTCCATTTCCTTTATACAGTAAGGATATGCCTTAAATGGTATTTGCTTTCTAGAGGAGCCCCGGTTTGGAGTTGTGCTGTAAAATACCTTTGAGACATGAGTAGTACATGAGCAAAAACTCAACAGGTTCAGCTCTGGTAGTTTTTGCTGCCTGTAGGTTTTTGCTATTTCAAACAAATGTTCAAGCTTTTAATCTACTTTGATAAGTGTCAACTACTTTGGTATTTAAACAGGAACATTTTCTTCATTGATCACATGAAAGTACTTCCTTAGGTGTTTGCTCATTTATATTAAGAATCTCTCAAATTCAGCAAT-ATGAACCAGTGACCC---TGGTTCATATCTGTTATGTATCTATTAATTACTACATTTAAA-ATTTGA-GATTATACCTAACCATGAAAAGGCCTGGCCATGTTATTGAAGAGTGAGCTGCACAAGAAAGAGACTTCTAAGTCTTTGTAA-AGCAAGCTGCAACCTGAAGataatttccataatttctcttcaatatttttaatctttaatacTGCCTTCCTCCAACAAAAACTATGCACTTTATTAGATTCAAGTacacaaatattaaaa--agctTGTAAAAA-TCATTTAACTTTTAAGTAGAAATCAAACTTTCTCATAA--ATACCTTCAG-TATTGAAGAATAGAATTTGCTTGATTGAACCAAATACTAATTAAGCTATGTCCAAAGAAggcattttgctttaaaaattgtgAACTTTCATTAGAAATTAAATCAGGATTCTTATA---ATTGAGTGTTGCTACATTGTTATTCTTACCCCCTTCTTTTCAGATCTGCCC

a score=6545
s chr3           151530337 745 + 160039680 ATATTGAACATGATTCTGAGAACCTAATATTAAGTGTGTGTTTTTATTCAGGCAAAAAATGTGTGAGATAAACATTAATATTATTCATGTTCATGTATTAAGAAAGCAAAACAAAGAGAGCTCAA-AATTTGTCTAGTTATTATCAGGCCTGGAATGGATTTCAA-------GTGTTGCCCTAGGAGCTGTGTGTTC-----------------------------TTCCTGGAA---------------GCTGAATCATCAG-------------------------------------------TAAAGGGT---CCACTTTAAATCTGTATCCTCGCACCTTGAAATCCAGATC-TACTGGATTATGCACATC--ACATT------ATATTGTGTGGAGTATCTGCATTATAAAACATTCTTGAAAAGATTAAAGAATTAAACATGAAAGAAAATTATTTCACACATTTGATATACATTACATCAAGATATTTGAACTTCATTATCTGAAGTCAAAATTTTATTTTACTGCATGTCCATTAATTAAATTATAGATAAGTATAGTCTGTTTTATACTATTATTCATTGTATGCGCATATCTAGGCATGCAT--TTGAAATGCACTTTAATTTCTACTCTGTTTAGAAGGTTCCTGACCTCCAGCCTCAAAAAGATGCATTTAATTTCCATGTTCGCGTGTCTGCGTGGCAG----ACCTCACTGCAGAGGACTGTTTCAATATCCCTTCACACCTTTAGTAATGCTATCTTTTTTTGCCTTTGAAATGACATTTACCAAATTGTTTGCAATAACCTAAACTTATAGAAAGTATACACTTAAATTTGCCACTAGATT
s HiC_scaffold_1 138125816 766 + 233722169 ATATTGGGCAGCATTTTGAGTAATTTACATTAATCATGTAATTTAATATACACAACAAATCTATGAGATAAGCGCTGTTATAGTCAAACTTTATGTAATACAGAAGCAAAATTCAAAGAGTTCAATAATTTTCCCA---ATTAGTAATCACAGATAGAACTTTAATCCATGGgtatgactttaaaaataatgtattctttactttttttctcaaattttggtttgttttttggaagAATGGAGTACATTTGCTGATTTCTTAAAATTCCATATTGTGCAAAGTAGAATTCTCCAGACATTTTTAACTAAAGGGCACATCAACAAAAATATGTACCCTTAT------AAATCTCCATCACAAAAAATTATGTACATTTGCTATTTTGTACACATTGTGTATGTTATGTGTATTAGGGTACAtacttgaaaata-taaagaatgaaaaatgaaatca------ttaacATATTTCA------------------ATATGATCTTcactat-----------aatatattctgtt---------ttaattaaatatt------------------------tattatacattaagCACAGTAATCCAAAGATGCATGCCTgacttg-agtttattttttacttggtTTTAATGGTTGTCGAGCTGCAGCTTCATAAAGGAATCATTAA-GTACACACTCACATGACTGTGGAGTGGAGCTACCTCACTG-GGCACACTATTCAAATGCCTATT----CCTTCAGTAATGCTTTATCACTGTG-CTTTCAACTACCATCTATGGAA----GAGAAACAGTCT-AATTTATA-AAAGAACATAGCAAAGCATAGCACCAGATT

a score=28031
s chr3           151535326 2165 + 160039680 gttcttcctatggggttcaccaaattcagttccatgagatttcaggacttaagccccagatactttgtggttgtttga-aggagtacttcaaacagcctctgcttgtagaggctagacagagactctcacacaagtcac-tttgtcttcaaa------------gccagcatctctg---------ccttcattcctttccttaggtttcatctttcct------gctttctcttctgctagacctcatctgtcttcaaggatcatgtgattaaactgggtcccatgtcattaaatcacagtcatttcatcta---agaatttataaccttgactctacctcaaatgttattttatgcgtgtttatgt-gccgtacctacagatcccatgactacagtacgggaattttggaggagacattttgcttaccacaTAACTCAGTTTTGTCTGATAGGATGTATGGTTTACAATTTGACTGAGGCTTTTGCAGAGATTATTCTAACTGGGAGAAACAATAAACATAAAAATCAAGCAGAAGACAAGGCTATAACCTTTTGATTATAATTTGGTTCATAGA----TGATGGAACATGCTACTTT--------TTCTGAACTTGA--ACCCATGCATTATTTAGAAGGTGTTCTAAGGTTTGAGAA------------------------GGAGTGGGGGCTTTAGATGGGCACACCCCAGGCAAGTAGAAACCTGCTGCTTGTTCACAGCAGAAGTATGTTTG----------------------------------------------------------TCTGGCG---------------------CCAGTT---AATTTAAATGTACTAAAACTGTTT-GAAAGAACGTGTAAGTTGCAATCATGACACAGTCTGAAGTGAGCATGATTTTGTTTGATATG-------ATGAAAAATTAAAGTGTGAGTCTGGAAGGGCTGCGAAAGAAATTTCCACATTCCTTTCGGTGAGAACTGATGATATCAGCATATAGATGGCTTCATCAATTATTGAAAAAAAAAGACTAAAAAAGGAAAAATGACTGATTGAGATGCTGCGTCTTGAACTGCGGGTGTGAAGACCTTTGGTTGAAGGTACCTGAAGGTCTAAATGCTTCATACTTCGCCCTGGCTGTC--TTCTCTGCTCATTCATTAAAATTTTCCTTTTAGGAAATTTAAAGAGTAAAAAGACTGCTAAAAGAATATTTTAAATGGATTATTAAATAAGAGTGTATGTCCCAAGCATTGAAACA-----------CTGACATTAAAAAATAGATCAGTGTATA-------CCACT------GACATGGGCAATGGAAGTTAAATTTCAAGCA--ACCATCTCCGCAGTGTTATTTGTCC--------ACACATTGTGCTCCCTCACAGCTTTCTTTATTCTCTTCTGTATTCCCACACACAGCA-------ACAAACCTTATGGTCACTGTGTCTGACATCTAGGGTTTGTCACACGGTGGTTTCTAAAGCGGTAGGCTGGATTCTGGAATGACAACATAGAACTAATCTAAAATTTA-AGGCAACACCAA-----CAATGAATGTCCATCTATAAGTCCTTAGTTAGCCCTTGTGCACTTGTGAAACTGCTGTTTAGGTACAAATGACAAAATCATCACAAATGACAAAAGAATGAAAGCCAGCTTTTCATGCTCATTTATGTGCTCTTAAACTTTAAGTAAATGCTAATGAG--------AAAATGAAATTATTCACTATGATTAGCATGAACATGTTT-AAAAATTACCCAAGCTCTAAGTTCCTTAAAGACCATATAGTTACCACCCTAAAATGATAGCATTAACAATGTAATACCAACTATTAAATTCAGAATGAAACAGTCTACTCATCATCTGATCTCAAGGTCCTTATCTGTG-GTTAAGCACAAAGGGTTTCTCCATAATCAGA---AATTTT----------TCATTCTATACAGACTTGTTTTAAGGTATAATCTTTTTACCTTTACA----------TTGCTGCACAATCTATTCTTTTA-------------AAATATTTTCCCATCCCATGTAAACTGGAGCA---TTACACTTCATTTCTGTC-CCTAAGCACACAAAGTCACATGC-TTTGGATGTTTTTGGACGATATTGATTTCTTATGTATGGTTCATGAAGCTACACAAAGCCAGTTAAAGACATGT-ATATATTTATGGACAAAATTTTATACAAGTAATATAAAGACATAAATGTGGGCTTTACCACTGGGTTTATGTTGCTGTACCATATGATCCCATGTGATACAGAAATAGTACATTT-GAATAACTGAAGAAAAA----TCCAGGTTATTTTAAAACACCGTTTTTCTG----ACTAGAAT--TATTATTTT
s HiC_scaffold_1 138130585 2293 + 233722169 GTTTCTCTCATGTAGTTGGCAACATTCAATTCCATG-GACTGTGGGACTGAAGACCCATTTCTTTGTTACCTGGTAGACAGGAGT--------CAAACCCTGCTTGGAGAAGACTCTTCTATTCCCTAACACATGGCCCATTTGTCTTCAAAAACAAGAATGCTGCCTGAGTCTTTGGGCTGCAGTTCTTCCTGCCTTTACTT---TTTCACTTGTCCTTCATCTGCGTTCTCTTCTGCTATGTCTTTTCTGCCTTAAGGGGTCATGTGGTTTTACTGGG-CCAGTGGGAT-AACCCAGGATTTTCTCCTCCTTCTAAAGTCAGTATCCTTAATTCTACCTGTAAC---ATCTTGtgcctttttcttttgtcatatgCATAGGTTCTAAGACTAGAGTGCAGACAGTTTTGGAGAGcgatatttttttctgctttccctaatttt-tctGATACCCTGGATGATGAGCTTTGTAGCATATGCATTTGAAGGGCTGAATACAACtggga--------aatgataaaagaaaatcagaagccaGAACTATAACCACTTGATTCTGATTTGACTTTTGAACCATTAGTAGAGTTTACTTCTTTAATAGTGACCCTCAAATTGACAACTAGTGAGCCACCGGACAGG-GATGTAAGGATTGAAAATAAACAGGTATAGCCAGGCACTGTGGTATGGGGCTGTAAAGTGAGCTCTCTACGAGACTGCAGA-----GGTTCTAGCTCAGCCTAGAAATTTagttagtgagatcttgtctcaaaaatacaaagaaaatttaaaataaatttaaaaataaataattctggggatgttgctcagtgtgaagtttCCGGGTTGGAACTGAAAGGTAATAAAACTATTTAGAAAGGTCATATAAATCGTGATCATGACACATTCTTCAATGAACCAAATTTTGTTGGGTATGTGTATAGATGTAGAATTAAAGCATCAGCCTCAAAGAGCTGTAAGAgaaattttctcattcttttcagtGAGATCTGAC---ACCAGCATATAGATGGCTCCATCGATtactga--------gactaagaaaagaaaaatgactgatTGGGATGTTCCATTTTGGAGTCTAAATTTGAAGCCCTTGAGTTGAACGCACCTGTAGGTCTAAATCCTTCAGAATTAGCTCTATCCTTCGTTCACCAGCTCACCTATTAAATTTCTTGTTTAAcg------aaaggaaagaaaggc--------acaGATTTTGAACACACTGACAA--CAGACTGTATG--CTAATCTTTGAAGTAACCATGTATATCTAAAGTTAAGAAGCAGATTTCCATTTAGATAGCTCCACTTCAGAGGAAACAAGGaaatgattttaaagttaaaacaCTGCTTTCTTTCAAGGGTTAAGTGTTCCTGAccttaaatgatttttttctgcatagctattttcagtcttttctgtATTCTAAAGTGCTGCAGAGGATTACAGATCCCAGGTTCTTGGATGAGAAAATGCAAGGCCTTTGTCTTATTCATTCCTG-----------TGAAGTCATCATGGACAACATA-AACTGCTTTTAAACATACagacaaaagtgaaaaataaaggaatgctCATTTATAAGCCATTTCTTAGCCCTTGTGCTTTTGTGGCACTAATGtttacaaacaaataataaaggaATCATAACTGGTAAAAGAAGTGCATATAG------GTAAACATTAATGAGC----AAAATGT-ATTCCATGTTAAGGGGTGTTTTATGAAATAAGGttaatttcagtaatttttct---tatgtttcaAAGAATAACTATGCATTTAA---CTGAGGTATCAAGATGTAGTCACTCTGGTGTAAGCATGGTGCTGGTATCTTTCTAATTGTTCAACCTAAAAGG---CAGACT-------------TTTCTTAGTCATTATTTCTGCGTTAATTTCAAAGTGTTAGT-TATTATCAGAAGCAATTTTTTATTCGTTGTCATTTTATTTGGAGCTG-TTTAAGATCTAAGGATTTATCCTTCATAAACTTCTCTTTTGtggaagattatatatatatatatatatatatatatatatatatatataccatgtaAACTGCAGAGAGTTTTGACTTCATTTCTAACTCTTAAGTACATAAAGTCATGTGTACTCAGATGCCCTTAGGTGATGCTGATTCTGTGTATATGG-TCAT-CAGCTGTTAGGAAAGGATTTAGAATAtctcatatatttataaataa----------aagtagaATGTAAGCA------------------------ATGTTTTGCTGGACTGTGTGATCTAGAGTCATA-ATTTTCAGCAAATTTAGAATAactaaagagaaaacattttgaataattttagaaaatgactattctggtaaaataaaatagtattattct

a score=10377
s chr3           151540697 381 + 160039680 TGCAGATGGAACTATAACATCTGTGGAACTTCCT----------GCTCATCTCAAGCTCCCAAGTTAAACAATGTAAAATGTGCAGCAGCAAAGTCCC-TGACACTGTCAAAACCAACCATGCAATTTACTTGTCTAAGTCTG---------TGACA-AATGT-GTGTG--------TCGCATGA-GTCCTTGGGATTTCTGTTATT----TCTTTACTGCTGGCTTATTGTGTTTAGGTAAAACAGAACATACTACAAAAACAATCTCTTTTTTTTAACATTGGGATATCTCCCCAGGTGAATCTCTTGGCTTTTGGAGTTATCATATACAAAGTTTTCCGCCACACTGCTGGACTGAAACCAGAAGTTAGTTGCTATGAGAACATAAGGTATGTGTTG-TTGAAGTTTACTTCAA
s HiC_scaffold_1 138136961 403 + 233722169 TGTGGATGTGATTGtaatatttgaagaattttcttAAACAAGTTGCTTAGCAAAATCCAGCAATTTTACT--TGCTACCAGTATATTAACAATGTTCAGCGATACTGTAAAACTCTACCACA-GTTTTATTTGTCTGAGATTACCAGAGGGTTGGCATAATGTAGTGTACATACAACTACCATGATATTTTTGGTGCATATCTTACTGAAATCTTCACTACTTGCT------GTTTATATGGATC-TACTTTACTGtaaaaattatatctttttctaa----ttaaatattttcccaGGTAAATCTCTTGGCTTTTGGAGTTATCATATATAAAGTTTTTCGTCACACTGCTGGACTGAAGCCCGAAGTTAGCTGCTATGAGAACATAAGGTAACTGTTTCTTGAAGTGTCCACCAA

a score=84531
s chr3           151541454 3437 + 160039680 ATAACTTGTGGGACTGTAGTGGTTTGGTTGTCTGTTTAAGAGCTAGTTTTCCACCATATTCAAAATATGTATTAGAAAATGCATTTAATACATTTAATAAATTTATAAACATTACAGATTAAATAGCAAGTGAATCCATCTTTTAAAATACACAAACATTTGAAAGAAAAAAGATAATTGTTT----TAAAATAGATCTTAATGGACTGTCTTTTGTCAGACATTTCTCAGAGCTTAGCAAATCTTTCTTCTTA-----TTCATAATTTACATGTTTCTATAATTTTTCCTTTAACTCTCTCTCTAGTAA---GACCTAGTAAGACCTTGAAAATGCTTC-TGAAGGAGCCTCTGAAGTA--------GGTGTATGTGAAGCCAGGGCTGCT-GTATTGCTCAGGATCACTCCTGCATCCTGCAGGCCTGACACCTTTGAGGAAGATTCAGAGTTGCAAGTTAGCAAGTGTTTTAGTGATTA----TCTTCCTGAAGTTCTCAGTAGTCTGAGTCA-------TGCCCTAGCTTCAATAACGTTCAAAATGCTGTGTTTTCTGAGGTGCATTGCTAACACACCTACAGTA----ATGACCCCACTGAAAATAAAG-----------TGTCAGTTGCTTCATTTTCAAAACCATGTCCCCTGTGAGAAAGATTTAATATTGTTTTACTTGAAGTCACTGATAGTTGTTTGAAAATATGGATGCATTAATATATGTGGGCAGAGTTCCTTTAAATTGTATGATATTAGTATTCTGACATGAATTTATTTCTCGGGGTTACTACCTTGCAGAAGCAACAACAATAACAAAATTCTAGACTTATAT-----------TCTACACTTCATCATTATTGTATGTAAAAGTATACCAGAAGCCACTTTAAATGTGATAAACACCAGCTGATGCAAGTCCAAACAGGATGCTCTTCAAGGTCA----------------------------------------------------ACTGTCACAGTAGATACAGAATCAAAGCCTGCACACTGCAGTTATCACTT-TAAAATCCTTGAAAATTAAGTACTTCCATCCAGAAGTAC-ACATTTTAATAATGAGAC---CTTAATTTCTGAAGCACAGTCT--AGATTGAATAGGAACATATTTACCCTCAAGGCTGTTGCATCAAACCAC-AAGCCAGCTATGAGCATCTAAGTCATTTATGACTTTTCTGGTCATGAAATACTC-TTCTCGT------CCTTAACTGGGGGATATGTGGGATGTGTGTGCCAACTGGGGGTTACCTGAACTTGCACGAGTTTT--AACCAAAACTCTTCTAATGCACTCCAGGTCTTGTGCCAGAGGTGCCCTAGCCCTCCTCTTCCTTCTGGGTACCACCTGGATCTTTGGGGTTCTCCATGTAGTGCATGCATCTGTTGTGACAGCCTACCTCTTCACAGTCAGCAATGCTTTCCAAGGGATGTTCATTTTCTTATTCCTATGCGTTTTGTCTAGAAAGGTAAGTA--------TTTTAAAA----CTAATTTATATTCATGTAGCATT--TTACCAAACAGAGAGAAAA--ACTGTTGCCTTGAA-GTGTGACTTTCACCTTTTATGGTCTAACTGTAGTCCattt-taaatatacaataatgattaaaataattttattttaaaatGCCAGCATATAGATGCTCATATATGAAT---ATATCTTACAAAACCTTATTATTAGACCaatataatataatatgatataatataaGCTATATAGCTTATATTCCATTGAGTATATTCCTGT----GTTCAAACAGCAATAG-ACTTCAGTAAATCAAATAGGGCCATTTATTGTGACTTGAAAATAATGTTATGTGACTGTCTTAATAATAC--AGCATTTCTTCTTTTCT-------CTTTCATCAAGATTCAAGAGGAATATTATAGATTGTTCAAAAATGTCCCCTGCTGCTTTGGATGTTTAAGATAAACAATGAGAAGTCATGATAATTACAGCTGCAATGAGATGAAAATTCCAAGATTCAGATAACCTGTGTGGCAAA-------AA----ATGAGCCTGTTTTTATTGTTAGTAATTAATTTCAAATCC---------ATTTT-TCTGTTCACAGTATAAGAGATGTAGTTAATGTGAGATAAAATTATGGACCAGAGAGCTACAGTGTGTTTTCTTACATGACATAGTTAGAGATATGTCAAAAATAGTACTGCAGATATTTGGAAAGTAATTGGTTTCTCTGGAGTGATATCACTGTGCCCAAGGAAAGATTTCTTTCTAACACGAGAAATATATGAATGTCCTCAAGGAAACCACTGGCTTGATATCTTTGTGACTCATGTTGCCTTTCAAACGAGTTCCCTACCACCTTAGTAATGAGTTCCTTTGCAGGAAGGAGAGCATAAGAGACGTGGAGGGGCAGAGTATGAAGC-----AGTGACGAAGGCTTCTCTGACAAGGAATTGTCATTCCAATAAACTCAGCTTCTCTA--AACTTGATGAGAAAATCTCAAGATAAAATAACGAG--AAAGGAAATATATCCTAGCAGTTTGGGAATTGGTCTGA------------AGTAAAAAGCCCCAGATCTAAATTTGCTACATCCATGTTCTTCCTTACTCTTCTAAAACCAGA--GAAAAGCCTTACAACTGACATTATCAGAGATGGATGCTCTTACACTAACATTAGATTTGAGTGTAAAATGTTTTCATTC----CACACAGATTAAGACTTCAAATATGTAGTCAGTAAAACATAGATTTGTCAAAGTATAATACTGTTTATGTCTTTAGTGAAAAGA----ATGTGTGCAG------TATTTTG-TCTATAATATTTTACTGTTATGAAAATTA-CCTTTTAATATTAAATCAGTATACTTGAATACTTTGCTGTTTTTAATCTTACAAATAGTGTAATTCATGTTGCAACAGGCCCTTTTAATTGACTGTACATAAAAGGTCATTATAAAT-TTAAAGTATTGATGAAGTGAATTATAATTCTTTT-CTGATCAGA-AAATACACAATT--AAAGCATTATTTATAACAAATAAGAAGTCACTGAGTGCTGTAGGGGTTTCACAGTGGGTCTAGTTTTAGACTGTTTCTACTATCTCTCAAAGTCTATTGGCTCAAATGTATGGC-TCTATCT--------ATTCTCTTGTT--CAAATGAAGAGGCAGATTTTTTTTCAGAAGTGA-GTCATTGTTCTGAACCTTCCTGAAAGCATAATTCAATCTACTGGACATTGCAATTTTAA------TTCTTGTGCTGTT-GAATGAAGCCTGTCGAGACCTCTCCTGAAAAATGAACAGTCAGCTGGATGAAGCAGCCCTATCGCTGCCTGACCGAGTTGTTCTCTCAGGAGAGACCACTCACCTGTCAAGAAGGG--CTTTGCATTTCTAGAGCCTGTGAGATGGTACACTTTGACTAAATCTCTGGATTTCTTCTGTGCTAAGT-----------CTGTGGCCCATGACTGCCATTGTCATTCTGGGTTGGGACTGTAGAAATAGGATA-TCAAAACCTAGTCTGCTCAATCAGTGGATATGAAACTAT-TGCACGTGGTAGACAGAGTGACCCTCCACAAATATCTGTACGCTCCTCTTCAGAGCCTG
s HiC_scaffold_1 138137394 3519 + 233722169 ATAATTTTAGGAATTGCTGTTATTAAAATAATTGGTTAAGACTT--TCTTCGaccatctttaaaatatataccaGGAAAAGTATTTAATATCTCTAATAAAACAGTACATATCTCAGATTAAGTGGTACGTGAAGCAGTCTTTGCAAATGTACTCCCCTTTGAAAGAGAGATGATATCCATTTAACACAACCAAGGACTTA--GGATTGtcttttctaaaacatttctcaGAGTTTGGTAAATGTTTCTTTCTGGTACTTCTCTTGTTTGACTGTCCCTACAGTTTTTCCTTTAACCCTCTCTCTTTAAAACTGATTTATTGATACCCACCAAATGGTTTGTTCAGGAAAAGCTGAAGTACACTACAGGGAATGTGGGAAAC-AGCACTGTTTGTGTTGCTTGGAAACAGTCCTGTAGTCTCAATACCTTGCAC--------AAGATTTATAGTGGAGATTTAGCAAATGCTTGAtcgattactttttttttttaactctgcaCTATTCATAGTTACATGTAGTATGCtggttttaataaaaatgaaaatg--acttttTCTAAGGCATACTGCTAAAACACCTCCCGTAGAGCATGATTGGACCAAAAATGAAGGCCAGAGTAATCATTAGTTGCTTCATTTTCAAGGCAATGTCCTCAGTGA-AAGGATTGAGTATTGTTTTACTGAAAATCACTGACAAACTGCTGAAAATATGTAAG-AGTACTTTAT-------------CCTTAATTTTCAAGAAATTAGTATTGAGACTTAAATTTAT--CTTGAGGTAACAGCATTGCAaaaacatagatagatagatagatagatagatagatagatagatagatagatagatagtaattttcttctctgtgaacCCTGAAGAGGCCTCCTTTGATATCATGAACATGTGCTGACTCAAGTCTGGATGGTGTACTTTTCAGGGTGACTTAGGGAAAATACTTTCTAGCAGATAGATATATGTCTTACCGTGGGGAATTACTGCCACATTGgat-taaaatcaaagcatacacaTTGCAGT-ATAACagataaaatatcttaaaattaag-----CTGTCTTTAAATGCCACACTTTAATAAAGGAACATACTTCTTCTCAGGAAGCCTATCTTCCCATAGCACGGGGACACA----CCCTAAAGTCTGTCCCATCTCACTGCCGAGCACACTGTCAAACTTAAAGTCATTAATGGTTGTT---GTAATGAATTGCTTATTGATGTAAAAAGCCATTTCCGTATAGTCTGAGGGGTTTG----------GGGTGTCCCTGGAATATGCATGCCTTTTTGAACTGAGACATTCCAAATGTACAACAggtcctgtgcaagaggagccCTCGCTCTATTGTTCCTTCTTGGCACCACCTGGATCTTTGGGGTTCTTCATGTGGTGCATGCATCAGTGGTGACAGCTTACCTCTTCACAGTCAGCAACGCCTTCCAGGGaatgttcattttcttattcCTGTGTGTTTTATCTAGGAAGGTAAGCAGTATCTCATTTCAATAGACTCTATAATGCAATCATGTTACATCAGTTTCCAAATCGATAGAAAATTCTTATTGCCCTGGCTGTATGACTTTTGCCTCC-ATTGCTTTAGTACAGAACATGTgtaagtatttaatcagaa----------------------------cattTAGTTGTTCATTGAGAAATTGGCTTTTTTAAAGGAACTTGTTATTAG--CTACATAA-----------------------ATATAGTTCATATTTACTTGAGCATGTTCCAGTAAATGATCAAAAAGCAATAACACTTTAAAGAACTAAATGAAACTGTTTATTGTGATTTGAAAGTAACATGATGTGCTTGCCATAAttatacttagcatttcttttttttttttttttcttttttcaagatcCAAGAAGAGTATTACAGATTGTTCAAAAATGTACCTTGTTGTTTTGGATGCTTACGGTAAACATGGAAAACTATGGATAATTACAGCTGAGAGAAATTGAAAAT-CCAAGTTGTAGATGACCAATGTGTAAAACTGACTCAATACTATAATCCAGTTATTATT--TACTAGATAATCAAATATTCTGAGCTTGGATTTTATCTGTTTCCAGTGTAAGAGTTGTATATAATA-AAGGTAAAGTTATGTACTATATAGCTATAGTATGTTTTACTACATGACATACTTA------TGTCAAAA-TAATACTGTAGATATTGGGGAAGTGATTGGTTTCTCAAGAGTGATATCACTTTATCCAAGGAGAGATTTCTTTCTAGCACAAGAAATATATGAATGTCCTGAAGAATACCACTGGCTTGATATTTTTGTGTCTCATGTTGTCTTTGAAACTAGTCCCTTACCACCTTGGTAATGAGCTTtgttacaaaaatcaaaatgtaagaGAAA-GAAGGGGCAGAATGTAAAGCGAGAAAAAGGAAATGGCTGTTATGAGGATGAGATGTATTCTGAATAAATTT-GCTTCTCTATCAGATAGATAAGAGGtttttgagataaaataaaaaattggaataaaCACATCTGGCCATTTGGTGAATCATTTTGAACTTAAATTTCCAGTAAAACAGCTTAGACTTCTAtttgctatatttat----ttattta--tttctaatactgtaatataaaactccaaaaatgaagaca------atctatgtttt-----taaaattagattgtgTTATACGGTGTTTCTATGCTTATTTCACTAATTTTAACTTCAGatac-------ataaaatatgaatatgcCAAAATACAATGTCATTTGTATTTGTAGATATAAAATGTCAGATATacagttaaattattttattctatatccTTTCACCATAGTGAAGACTATCCAATCAAAATTAGACTGATATC-------------TTATTTTGAGTTTCAGCAATATTATAGTTCACATTACAATAGTCTcttttaatttactatttttaaaagaatgttgtaaatatgaaagcatttataaagtacattgttattgttttcctgttgagagaagtatacattttaaaaattttatttatgaca---aAAAAATTACCAGGAACTTAGAAATTTTCACAGTGGATCTATTTTCTGACAGTTT-TCCTGTATCTT--------CTTGCTTCAATGGACAGCTTTTATCTGTCCTCAGATTTTCTCATTACCATATAGAAATggtgacttttatttaaaaattatatagttaTTCAGCAACTACCT----ACAAAACTGTGTACACTAAATGGTGTGATCTTAAATTAATTTCTCTAGCTGTTAAAATGAAA--TGTCAAATCTTATTCTAACAAACAAAATGTTCCCGAAATGAAGCAACCCCTCTACCTTTTTACTGAATTGTTTTCTCAAGAATTATGATTCACCTACCAATCAGGAATTTTTACATTTCTAGTAGATCCATAATAATAggttttcattgtattttcttatttcttacatgcgaattattattttttattatggctgattattattttttccatttcaggACAGTGTAATAGGAATGTGATACTGAAAAGCTAATCTATTTAATCAGTGTATAC-AAGCTATGTGTTCTAGGTGGA-ATCATGAGCTTCCACAAATACCCATGTCCTAATCTTCAGAATCTG

a score=54542
s chr3           151547298 1975 + 160039680 AGTTACTGTTAGACCCCTAAGCCC--AGAAAATTCTGCATCTCCACCCAAACTCTCGGTTACTTGATGGGATGGGAGTGGAAGAAGCCAGAGCTCTGGGCGAGAGACTGAGGAGGCTGGGACCAGGCCACTTGCTGCTCCCTGCCTTCTCAGGGCACTTTCCAGA--CATAGCTGTA-----------------------ACTTGTGTCTCTCAGGGTG--GAGGAAGCATGACACCCTTTTCCTCCCATGAGATTCCCACA-GCATTTCAACTCTAAACCATCTTATGAATAT----CATAAGCCTTAGACCAAGTGCTTTATTCCTCTTCTCTTAGTCTTTCCCATAAACTTCTATAACCCACT------CCCACTCACACCATCACCCAAGCAATTCAGTTTAACAAACTCCT---TATTTTTCCATAGTCCCATCCTGTTCACACCATCACACTGAAGTCATTGATGTGAGCTCTCATTACAAGCATCT-CTGCTACTTATTTCTATTACCTAATAGCTTATTCGTTCTTTTT-AGTGGATGAATCTTAGTCCACATTAAGGGTGAACCATAAACACCACAGTTAGTCTCCACTCTGAAATGGTGCAATGGTACATTTGCAGGACTCCAGTATTATTCGGAAATAGCATTGCCCAtgccataggg-tcagtggtggtgccgaaggtgctaaatactaaga-----tatttatctcttgctggatatgaa---------------ttatcaggaggc-----------agcaaatctt-----------------ttaaagaat--------gcccaag-------tgaaaggaagt-taggctgttagagacag--------------------------cactaaagaggattgtgggagtatgcttttcagctcttctctttttaa-----------tttgcttccgggttgctatgaggtattcataaccatgatgta------atgccttcctcactccagacacaatgc-------agcagg-----gccaatgg-atcatggaccaccaactccgaaaaatgagataaaTGAAAAGTGACCT--------------------ACCTCA--------------------------TGACCCT----CTGTTCTGAGCA----AAAATCACTTG---TTCTTGCAGTTATTCAATGAAAAC--TCTCATGCATTTTAGAAGTACAA-AGCTCTTAGGAATTTTCGTCTTAGGGAAA---AATGTTTGTTACTCTTCATGGGTTGCTGGAGTGAGCGAGGTTTGAGATCAGTGGGAAACCTGAAGGT---GTGCATTGT---TAGTATGT-ATTGAGAGAGTAAACATGGTCAGGTTATGGTAGGTTTCTATGAGCTTACAGATTT-TGTAAAATGAGAGGGTTAAC-----TACAACAGATCTCTTCTGGAAACAGGATAATATGCTTCAGCTTTCAACTGCCCACTTGGAAGCACTGCAAATAATAAAATCTATAAAGTATATTACAATTGCATGCACTTAAAAATGAGAGAGAAAAATAATAGGTTTCTTTCAGTGTTGTCCTTGAGAAATATGGTTATGTTTCCTCTTGGGTTGCAATTTGACATATATCAGCATCCAAGGACCAGGCTGATCAACCTGAAAATGATGGTTTTCTTTCTTTTCCTTAATATATTGGAAATGGATCTAAAGGAACCTTCAGGATGCAGGAGGGTTAATTACCCTGGCAGTCAGTTAAGCTTTGGAAATTTTAGGCAGTAAG-ACAGAGCCCTGAAAAAAGACTCCCTACCACCACAGCCTGCTGCGAGGAAACAGTCATGTGTTGTCACCACTGCAAATATTGCTCAAATTACCCTAAACTTCCCCTGATTTTGTGTGCATCCTGGCTCCTGGAGAGAGGCAGTGTGCTGAGAAGGTCATTTATTCTGTCACTTCAGCCCACTCGGCAATCATGACAACTACATCTTTCACTCAATCTAATGCAGAAGGCTTTTCACAGAGACCTTGTGTGACCCA----AGGGAAGTAATTATTCAAAACAATCTTGCAGCTTGCTCTTCTA---GTGGAGACTCCTCTGCAGTAGCACTG-AATACTCCCAAGTCCATC-TTCCCACTCAGATCAATTTCTCAGAATCTCCTGAAGGACTGTGCAAATAAACAACTACCTCCCAGGACTTAGAACATCCCTTTCA
s HiC_scaffold_1 138143655 2154 + 233722169 AGTTGGTGTTAAAACTCAAAGTCCTCCGCAAATTCTGCTCCCCAGTGTAAGTTCTCAGAAACTTCCTGAGATAGGAA-----------------------GCAAAAATGACTAGATTCATACCCAA---------GTTTCTTCCCTCTCTAGGAAATGTTTTAGAGCTACAAATGTATACAGCATCTGAACAGTATTTCTGTTTATGTTCTCTAGGGAGCAGAGAAAACATGACGCACATTTT-TGTCATGGGATTTTAACATACACATACAATTTACA-------ATGAATATATACTATGTGTCTTAGGTGAAGTGATTGTCTATTTTAGTCCATGTCCTTT---TGCACATTGATAATCGATTGCCTACCCTACTTATACCCTTAAGCAGGAAATTCACTTTAACAAACTACCATGTATTCTTCCTACTTTCCTTCCTATTTATATCATTGTA-TGAAATAATTAATATTAGACCCCactaaaataatgtattattagCTACTTTTTTCACTGAAGagctcatttgttcttttttggtgGTTGAGTCATATTCCACACTGAGGATGAACCATAA-TGCTACAGTGGGCATACAATCTGGATTAATGCCATAATACAGTGGGAAG-CATCAGGGTTTTTCAGAAATAGCAATGTCCAAGCCATATTGCTTgattatgttgttaaaaatacGGTGCACtaacagttattattttttttttgatggatGCGGACCCATGTTGACAAGCTTTACTGGAAGTGCTAGGATTTGAGTAAGTGTTCTTCAAAGGCTGAGGAGTTAAAGAGTTCATCACAGCCCATGATGCCATTGAGAAGTAGCAGAGCCTCTGAGAGGTAGAACCCTAAGGGAGAGGGCTAGTTTGTCATCCAAGGGGATTATGGGTATTTAGttttc---tcttctcctcacagCCCCCCGCCATTTTGCTTCTTTCTATCTGTCAGAAGTTGAGCAGCTTGCTGCATCTCTCAGGCTTCCTTTCATCCTTTCACATTGTGTCTCAAAACGGGCTCCAGCCAACAACATCAATGAAAGGAAACCTCTCAAACTG---TGAGCgacaataaaccttttctcaGTTTAAGTACAGCACCTCAGGTATTGTGTTATGGTAACAATAAGTTAACACAAAAACTCTTCTGCACATACGAGAGTCACATTACTTTCTTGCAAGGATTCACTGAAAACCATATCACG-ATTTGAGATCCATAAGATTTCGTGAGCATTTTCATCTTGAGTAAATAGAATTCGAATTACTTGCCATAAACTG-TGGCTTGTGGAGCCATTAAGATCAGTGGGCAATTTGAAAGTACAGGACACTTTATTTGGTGTTTCATTCAGATGTTACACAT---CAGG--------GTTTCATATGATATTTATGATTAATATGTAATGAAAGGGTTAGCATAGCTGCAATGGATTTCTTCCAGTATCAATGTAACATGTTTCTAAATTCAACC-CCCACTTTGAGGCActgtaaataataaaatctataaagtatattataattttatgccctcagatataacagaaaaaaataataggttACTTTCAAAGTTGTCCTTAGGAAATGTAGTTTCACTTCCTCTTGGGCTGCAATTTGCCATATATCAGCCTCTAAGGGCCAGGCTGCTCAGCCtgaaaatgattattttcttttttttccttaatgtatTGGAAGTGGATCTAAAAGAACCTCCAGTATGCAGGGGGGTTAATTATCTTGGCAGTCAGTTAAGCTTTGGAAGTTTTAGGTGATAAGAACACAGCCCT-AAAAAAGACTCCCTGCTTCGGCTGCCTGCTGTGAAGAAACAACTATGTGAGGCCACCACTGCAAATATTGTTCAAATTACCCTAAAATCCCCAT--TTTTCTGTTCTGCTCAGCTCCCGGAGAGCAGCAGTGTGCCGGCGAGGTCATTTATTCTGTCACTTCATCCCACTTGGCAATCATGACAACTACATCTTTCACTCCATCTAATGCAAGAGGCTTTTCTGCAAGACCTTAGGTGACCTAAGAGAGGGAAGTAATTATTCAAAACAACATCGCTGCTTGTTCCTCAAAGTGCCACAGCTCCTCTGCAGAACCAGGGaaatgctcccccatttgttgtTCCCACTCAGATCAATTTCTCACATTCTCCAAAAAGAATGTGTAAATAATCAA----CTCACAAATCTTAGAACTTTACTTTCA

a score=23017
s chr3           151550825 1030 + 160039680 AAATGCCTGTGTTGCTCCTGACATCAGAGAACTCTCGGGGCCCTCTCTCATGGCGCTTCCCACAA-----------AGGGGAAAGGAAACTGATGAGAACACTTTTACAGGAAAATAATCTTATGAATTAGTGAGGAAACCTAAGAAGTTTTAAACAAAAGCCCATTTCAGGGACGCCTCCCCTGAAGCTACACAAAAATGAAAAGGCATCGAGAGAATCCTAAAACAGCATTCAGTGGTAGCTTCAAGCCGATCCTTTTAAAGGGTGATTTGTATGCAACACTTCCGAGTT--------GTACTACAGACTTCTGAATCAG--ATGATCACACCCCACACCCAGCAGGGGCAGCTGGAGAGGACAGCAGAAGAGTGTGAAAATGCATATTCAAAATGTTTTCCTCCAAAACCTCCTGAACAACACAGGCTGTGAGCACTGCCCCCGTCATCACATAGCCTTAGCTGGAGCTTATGTCTCTCACTTTGAAAGGGAAAATA---------------------------------------------------------------------------------------------------------------AAACACTACCAAAGCTTAGCCCATTTGATTTAGGCTCATTAGACTAACTCACTGCCTCACA-ACGCTGAATCTCAATG--TAACTGCTGATGGCAAGTT-CACACTCTAGAGGTGTGAATGTGC-TGAAATGAAGACAGATGGTTACTCTGATTTCAGGTAAATAGTTTTTCAAGAAATGACATTCCAAATGTACTCTGTGTTGAGGGAA--TCAGTGGGAGACCTTTACAC-CATATGATAGTCCAATCACTATGAAAGAACATGAACA-ACCACTTTACAAACAAAAA-TAATAACTGATGTTCACTACATCTCTGTTAAAATAATATAGTAG-GTGTGGAAGACTTCCCTGTCCTGCATTTTGAGAGAGAACCAATATTGTATGAAGCTGTGCATGAAAACTTAGGT--GTCTAAACATTTAAGAT-GTCAAAGAGAAAATAAGACCAACTTTAACTTTACTTACTTGGGA-GTTTGACAATGTTGTGCTATAAAATATTTAGACATAATTTATGTCTCTCTCTTTCTGATGGGAAAGGTAGAAAATTTAACTTCCTTTAAAA
s HiC_scaffold_1 138149211 1126 + 233722169 AAATAAGTGTGCTACAATTCACGTTAAAGAACTCCCAGCTTCCTGCTTCA---------CTACAACAGTGTataagaggagaaagggaaatgaTGATGCTGtgctta----aaaatgaatttatgaatTAATAAGGACAT---AAAAGTTTTCAATGAACGTGGTTTTCTGGGATGCCTCCCCTGAAGCTACACAAAATTGAAAAGGCATCTACTGAATCCTAAAACAGCATTCAATGACTTCCTCTAGTCTAGCCTTTTAATGGATGATTTGTATGCAACACCTCCAAGTGAGCTGAGAGTATTACAGACCACTGAATCAGACATAATCACCCTAAACACCCAGCAGGGGCAAtgggagaaaacagggaaagacTG-AAAATcttacattcaaaatatttttctctgaaactaTCCAAACA--ACAGTCTATGAACATTGCACACATAATCATGGTGTCTCTGCCATAACTCatgattctttcttttaaaagtagaaaagaatcaagatatattatgtacaggtacaaattccctatgatgaatgagaTCATTGTGTGTATCCCAAATGTACCTATAAGATTAattcttaattgtttttaaaaggagaaCAAGCATTACAGAAG-TTAGTCTATTACCTTTAGGCTAGCTAGGCTA----ACTGTCTCAGGTACACTAAAAGTCAAAGTCTAACTAGTGATCTCCTTTTGGAGGCACTAAAGGCACTAATGTACTTGAAATGAAGACACATAGCTGTTTTGACTCCAGTTAAATATGTTTTCAAGagatgacattttaaaagcattGCCAACTAACataaactaaaaaggaaaaagaaacacacacaaaaaaaactga--actaaaaagacacacaaaaatatCACCATAAGGACAAAAAGTAATAGGTAAT------TAGACTCTACCTGGAAAAATACACTTGTGAAGGAAAGACT-------------ATGTGAAAGATAAACAATATCTTTTAAGGATACACATGAAAATACAAACAGGTTTCAACATCTAAGATAGCTAAATACACAAACTAACAAATGTTAACACTTTTTGATTAGAATGTTTACTAACTTTGTATTATAATATACTTAGACAT--TTTATG--ATCCATTTTCTGATAG--AATATAGAAAggtataatttctttaaaa

a score=34308
s chr3           151556999 1152 + 160039680 AATCAGATCATCAGGTTAACTTTGATAAATAGATCTATTTGAAACCTAAGGAAAAATATATTTAGCCTACCAGCGGTCAAAGGACTTTTTCAAACACCAACTACTTTTACAGAATAATTAAGGCACAATGAGCAATACAAAAAAAAAAAGGCAACACAGCACATAACCCTAGGTACTGTTTCAGTTTTTCAAACAGGTATCCACGGCAATGGCTTAT--TCTGAAGAGTGGTTTGGGGACCTGTGTTGTTCTATTTTCAGCTCTGAGTTTTCAGATCTGTGCATCTG-TGTCAGGGTGACTACTTCCTGAATTCCCCTG--ACCCTGCTGAGCTGTAAACCAGCTCACTGCAGCTGGTGCTGTCCTCAGCCTTGTTCTCCAGCAGCAACACGGGAGAGAAGGAA-ACAGGGCATTAGTTCAAAGTTGCTCCTGTGAGTGGGAATCCTTAGGAGTCTTGTTAGGAGAGTAGATGCCCTGAACTTGGTCTCTAGAGATAAGGAATCCATTGGCTTGGCACAGAATGAG------TGTCTGTACCTTAacacacacacacacacacacacacagagagagagagagagagagagagagagagagagagagagagagaTACACACCTTGCACGGAGACTATGGGAAAGATAGCCCCTGAACAAGGCTTTGGGACACTCTGAGTTGTAGAAATGAGCTGAGTGCTCCGGCCAGCAAGTCTCCACTGCAAGCAGTACATCTCCATTGTGCCAAGGAGCACGTCGTATtaatgtgatttgtttata-ttttgtttggctagactatgagcttcttgagggcatgtcttggtcaattaattttatgttcccaatgcctggaacaGTGACTTTAATGAAAGATAATCTAAAGCTGAGGCCACAGTGCC--AAAGGAATGTTTCCCACTGACTAAAAGAGATAAAAGAGTGTGATAATGTAATTAGAATTCACCGTTTGCCTAG-GAGTCCCTTGTTAAAATTTATTATCCTAGACCATACCTGAAATTGTCTTCTGACCACTGAGAAGATAACTTGTTCTTTTCCAACATAATTAAATGATACAAAACTGTTAAAACACATTTCTAAATAGACAAAAAAATAATTTGAGGGAAAA------AAATGGCCACATTTGATCTACTTTCGTTCTCCATATTTCCAG
s HiC_scaffold_1 138163465 1055 + 233722169 AATCAAGGAATCAGGTCAACTTGGATAAGTG--TCTATTTTgc-cctgaggagaactctagttGACAGA---------GAATGACTTTCTTAAATGCCTAGT-TTCTTCCAAAATAATTAAGTCACTAtggacaatataaaaataatga--------aggattTCACCCACAGTAACATTTAAGTTCTAAACACAGACAACCACAGCATTGGCTTAAAATCTGAAGCATAGCTCGGGGGC-TGTGTTGTTCTATTTTCAGTTCTGAATTTTCTGATCTGAAGGCCTGGTGACAGAGTGACTGCTGTCTGAGGTCTCCTGCGACTCTGCTGAGCTGGAAACCTGCTC-CTGCAGCTGGTTTTGAGCTCAGCGTTGTTATCAGGCAGGACTGGAGGAAATAAAGAATATGTCACAGAAAGTCTCAGATTTCCATGCGAACAAGAATCATTAGGAGTCTTATTAGAAAAAAAGGACTCTTAAGTTCTGTCTCTAGAGATTTTGACTCAGTGAGTTTGG----GGATGGGCCCAGGTATCTGCGTTTTAATAAATA---------GCTCCCCCAG---------------------------------------GAGATGCA-----------------------------ATCCATGGTCAATGCTGTAGAGAACTCAAATGTGT-GAAATGAACCAAGTACCCTATCCAGCCTGTTCCCATAGCAGGCAGTGCGTCTCTATTATGTCAGGGAGCACATCGTATTAATgtgatttgtttatatttttgtctcGCTAGACTGTGAGCTTCTTGAGGGCATGTCTTGGTCAATTAATTTTATGTCCCCAATCCTTGGAACAGTGACTTTAATGAAAGACAGTCTTAAATTGATACCACAAAACATGAATAGAATGTTTTCCAATGACTAAAAGACATAAATGAGTAttataatgtaattaaaatttactGTTTGTTTGGTTATTTCCCTGCTAATATCTACTGTCCCCAGTCATATCTGAGATCACACTCTTAGCTTTG-GAAACTATCTT-TTGTCTTCC--------TAAGTGTTCCAAAAgca-taaaatacatttctaa--aattaaaaacaaagtatgCTTGAAAAGTGGACAACTGGTCAAACTGTAG-TATTCTTGCTACCTAGGTTTCTAG

a score=87111
s chr3           151560223 4194 + 160039680 [encoded data, 4880 characters]
s HiC_scaffold_1 138167144 4416 + 233722169 [encoded data, 4880 characters]

a score=106750
s chr3           151565697 3506 + 160039680 TCTTCTAGGTTTGTGGGTCAGGTGATCTCCCAGCTGTCAAAACTCTTCCGATGATATTCTGGCTAAGGACCAAAGCAGAGCTATCCTTGAGAACCTGCTCCTTGCTGTAGTACAGCTCTCATTCACGGTTTGCT-TCTGTGCCTGGGGCATTCTGGGAAGAGCCTGATTTCACCCTGCCAAAGTCTAGCAGCTTCAGGTCCACGTGAATCGTGAATCGCAAACACCGGAGAGCAAT------CAGAAATGCCCAACAGCCCTGCCGCATGAAACCAA-GAAGTTACAGAGGAAAGGTCGGGACGAGGAA-AAGGCTTTACTCTTTCCCATGTGTTTGCATTTGCTTCAAAAAGATTTCTCTTCTT----------GGAAGCTAAAAACCCAGAGCAACCTTTGCTACCAAGGGAACAGCTGCGGTAGCTCTTTGAGGATGGCCCCGTTCCAGAACTCAGGTCTGACAATCCAAGAAACCTCTCTAGCTTTTGGCTCTGAACTGATCATCACACGAAACTGAACGTTCGACAGGAATAAATAACACTCTGGGGCCTGTTGTTTCAGGTGCAAGCCATCCCTACTAAGTTTAAAGATGTTAAAAATCACCTACCTTGGTTGTACTTTCACCATAACCAAAAGTAATACAAATACAGATTTTAACAATCTTTTCAGGGACTTCTGTTTCCACGCACTGGGAGCTGGGgattcacacatataattcccattaacactaataggagttggagtgtgtacgccaaTTCCCTTGTGTTGAAATAAGTCCATAACCATATGGATACTAATAAATACATTTTTAATTCCAGTTTTATGCAGATTTTATGTAATATTTTATACAACACTTAGCAAACTCTTTGGAGACAAAGATTGCTTCTATTAATTCTCACAAACAGAGACACAAATTCCTACAAAACCCTGGTTTTTGTATAATATCCACTTCTTTTATTAGGAAA----AGATTCGCCTAAATTCTCGA-AGCAGTTTTAATCCACCTACCTCGTGTAAAGATTTTT------TAAAGTGTTCGGGCATTTTGTTTGTTCATTTGTTTGCAAACATACCTTCTGTGCATGTCATAGCCTCTTGACCTTGATGAGATTTTTTTTTTTCCTTCCAGGTGGGTGTAATTTTTAAATTGATAAGCATGACACAACCTTTAGACGATGCTTTAGTGCCACCTGCTGGAAGATCCTTTAAAAGCAA-------------TGAATTTACTTTCCTTTCCAAAACTCAGAACTAAATTACCTGGAGACCTTAATAATAGACACAGTAATGAACtaattataaataatattttaaaatataatttCAAAGATAGTTAGAGGAAAAAGAAACTAGTCAAGGAAAAGAAACTTTTCCCGTTTGGAGTTTGGTT---------------AAAGAAGGAATAAAAGGAGAAATTGGTGAGAAGAGACAAGAGGATTAAACAGGATTAAACACTGATGCAATTCAtgtgtgtgtgcttgtgtgtgtgtgagtatatgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATTTGTGATACTTAGAATTTAGGCTCTTTTGGAGTATTTTGTGGGAAATCATTTTTTTTTATTTTCAATCCTCAGATAAGTTTTAAAAGTTTATTGTATGCACATGGAAATAA-----AATCAAGAT---TTACTTCAAAATTCAAGAAAATTTTAGTAGCCAATGTCACATTGATTCGGGATTTGCTAAAAGGGGCTCCAGTGTAAGTACCAAGAGA-CGTGCAATTTAAATAGATTTAAATAATAATAGGGTTGAC-TTTTGGAAATGAAATTCCATCTTAGAAACATATTCAAAAC-AGCACATATGGTGTTTGAAAAAGaaaattaaattttaaaattttaattaCCTTGAGCTCAGTACAGAATAAAATGCTAAGGCAAAATCCTCTCAAGAAACAAGTGTTGATTTATCTGAATTTAACAAGGCAGCTTCTGACAGAGTGCCTGAGTCTCTAAAGACCCCAGGCCTGAAAGGTTGGCTCCT---TGGTGAGAGTTTTGAACCCTCCAA---------------------------TCGCAGCTCGGCCAGGCCCCACACCCACCACCTTCTTGGAGTCAAAAGAAGGGAGATGCATACAGCATTCCCCA---TTCTTGCCTAGAGAAGCAGCCAGAGGTGGAGTTCCA--CAAGAGATTATTCATTGACTTTGAAAGTGAGGATTTGGGACAGGCCCCATTAGGCCCCTTTAAACGCAGTGGCTTCCACTCTGTATCATCACACTGGGCTCCCT--TAACTGGAGAGAAAACTTTAAAAGGCTTTAG--TCCTT------------TCCAGATTTAGTAAACTGTTTCAT----AAATAATAGGCCTTTTATTTTAATGTCACTGGAACCAGAGGAGGAAA--TTTACAAAGA------------------AGAAGAAAAGAAAGGCAC---------------------------------------TCTCTTTCTTTTGTCAGCCA--AACTTGACAAGA-------GAACAAACTAGAACTTTGAGTGTTCAACGTTTTCTAACTGAATTAAAT-ATTTGATTTAAATACATATCTTATTATCCTACAAAAGCACTTTTCACTTATGCATCCCAACACACCTAGAAAGAAATACATGAGAAGCCTTTAATTCTGTCAGCTTAAAGGTAAGGTAGTTACTTCACTATGACCAGTCTCCAAGATGCCAGGGAAATA----TTATAGTCATAAGATATTTAGAACAATTGCAGAATGGGGGGTTATATATTACATTAAGTCACACTGAGATCATCTATCCCTCCCTCCCTCCCTCCATGGTTAG-AGAAACTGTTGGAAAAAGAATAAAAACCTGTTTCTATAAATACCACCAAAGAAGACAGTTAAAATGAATACATAGATTTTTTTGCCCCTTAAACCAGGATTTCAATCATTTTTATGTCTATTCCACAAG-AAAAGCCCTAATATGATGCAGCTCTTTCCACATTCTCAGGTGCTCTAAATGTTATCTCCTTGATGCACATGCCCAGCTTCTATTAAACACTAATGGTGAGACTGCACAGACATTCCGAGGACACAGTAGCCCTGAGCAGCTTTTACTCCTTAGATAGGAATAGGGGATGTGCTTTCAGGATGCGCTTTAGCACTGCAGTAAAATGGACTGTGTTTCCATTAATGTTCCTTGGGAGAACACATTGGCTGGTACTCAAATTATATGGATGGAGTACAAAAGAAATGGGCTTCCAACCATCACCAACTGAATTTGTCTTAAGGAGAGGTAAGTGTTGACTAACTAGCCCCCAGTAGGTGTTGCTGTATGTGTCTC-CATAACTCTGCACCAAACA-CTCTGCTATGTGTGAGAGAGGGTGATCATTAACATTCGCCTTGCCTTGTATACCAGTGA---CCACAAGGGAGAGGTCACTGATGCACAAAGCCTAAATGATA--GTCTCTAAGCTCCCTCGACACTCTGCGTCCGTGTATTCAACCTGTAACAAATCTCCCTACTTCT-CCATAGACGTTCCTGAAAATGACAGAAA--CTGGAAATCCAAAGCAGGTTAACTTG-AAGC-AAAGTCACCATGCTGTGTCTGCCTAATTCTC-CATTCCCTGTCTGGTT
s HiC_scaffold_1 138172265 3469 + 233722169 TCTTCTAGAGCTGCAGGGCAAGAGATCTTCCAGCTGTCAaaattctctcttcactttcCTGGTTCAGTGCCCAAGCATCGCTGTCAATCAGGGACTGCTGGTTGCTGCTGTGTAGTCCATATTTGCTACTTGTGGTCTGGGCCTGGGGCATGC---AAAGAACTCATTTTCACTGGGGCAGCATAGAGCAGCTTCAAGACCAGGTA------GCGTTCCAAAGACCTGGGAGCAATGGTCACCATTGATGTTGAGCGGCCCCACTGTGTGAAGCTGGCGAAGCCGCTGGATAAGGGTCGGGAAGAGGAATAAAGCTCTGCTGTTTTTCCTGTGCTGGTGCTGgcatcaaaaagattttttttttttttttttcatggaagcTAGAC-CCAGGAGCAACCTTTGCTACTATGGGAACAGCTGTAGTACCTCTTTGGGGATGGCTGGCTTCCAGGATGCAGAGCTGGCAATCCTAGAAACCTCTCTAGTGTTTGGCTCCAAATTTATCATCACACAAAACTGAATGTTTAAGTGGAATAAAGAACACTTTGGGGTCTGTTGTTTCAGGTGCAACTTA-CCCTGCTAAGTTTAAAGATGTCAGAA--CAGCCACCATCCTTCTGGTTTCTTCATAACCACAAGCAGTacaaatacagattt--aaaatccTGGTGGAGATTTTCATCTCTGTGCCCTGGGACTTGGGGATTTACACATATAATTCCCATTAACACTAATAGGAGTTAGAGTACGCACACCAATTCCCCCGTACCGTAATAAGAACATAACCATATGGAtactaataaatacatttttaattctgattttatgcagatttaacataatattttatacAACACTTAGCAAACCCTTTGGAGACAAAGATT--CTCAATTAACTCTCCCCAACAGAGTC-CATAGTCACACAAACTCCAACTATTTCTACAATATTGATTTTCTTTGTAGACATAGTTTAGGTTTAACTAAACTATTGGTAGTTGTGTAAATCTATGCA----GTGTTAAGATTTTCCAAATGTAAAATGTTC------------------TTTGTTTGCAAACATAGTTTCTTTACATGGAGCAACCTCATGACCCCTCAGAGGTTTTTT-------TTCCAGGTGA----CATTCTAAAATTGATAGTTGTGATGTAAGCTTTTCACGGTACTTTAGTGCCACCTCCTGGAAAAATCTTTATAAGCAAGAAATACCAAAATTCAATAAATTCACCTTTCCCAAGGCAAGAAACAATTCA-CTGAAGACGCCactaatatttacaattttaaaaaaa----gaaaaagacattaaaaaat------gaaga-------aggaaacaaGAATCACTCCAAGAAAAGGCAATTT-----GTgggattttgctttattttgtttttttgagataagataaagaagaggaaaatagaTTGAAATAactataggaaaaa-------taaacaaggtTGGGACTCATGCAAATGTTTT------------------------------------------------------------------------------TTAGTAATATTTAgtactta--ctttat-------ttttgtggaCAA------TTTTTTA----CAGTCCTAAGAAAATT-------GTTTGTTGCATGTTTAAGAAAATAGTAAGTAGCCAAAATGAATTACCACAAAAATCATGGAACTACAAATAGCCAAGGTCACATTCATTTCGGATTTACTATAA-GGGCTCCAGTGTAAGTAACAGGAGATTGTGTAATTTAAATAGATTTAAATAATAATGGGATTGACTTTTTGGAAATGAAATTCCCTCACAATATCACAATCGAAACAAGCACATATGGTgtttgagaaagaaaattaaattttaaaaatttaattacctTGAGCTCGgtgtaaaataaaatgcaaagataCAATCCTCTGCAAAGA-AAGTGTTGATTTATCTGAATTGAACAACGCAGCTTCTAACAAAGTGCC-GAGTCCCTAAAGATGCAAGGTCTGAAGGGCCACGTCTTCTCCAGTGGGAGTTATGAACTATTCAGCATGGGGACATTATCACTTTCAAGACCTTCCAGCT----CAGGTCCTCTACCCAATGACTCATtagacaaaaaaggaagaaaat--attctgttTCACCCAGAGCTCTCTGCTAAGGAAAGAG--AGCATTGTAAATACAGTCGGAGGAGCGCATACTGAATTTTAATGTGAGAATCC-GGATAGg------tgtgacttttaaaaagaagtggaGGCCACTAAGCTTCATCATATTAGGTTTAGTGATAATTAGGGAAAGataattagaatattttaaatttcttaattgtAACTAATCAAggtttattaaaatgttttttcttaaaataaatgatgTTTTATCTT------GCtggaagcagaaaaaggaaattttaagaagactttaaatatatatatatacatatatatatatacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttggtaagtcaacaactttaaaaagacaaactgaaCAAATCAGAATTTAGAAAGTGAAACATTGT-TATTTAAATAAGATcatct--tttctctccatttttaatg----tatataatCAATTCACACAAACATGGACAAATACATACACAAAGCTACACAAAAGAACCTTTTAATTCTGTCCATTTAAAGCAAGTTTAGGAAGGCCACACTGACCTCTCTTCTAGATTTCATGCAAATAGTGTTTGTACTTGAAGAGTGCCCAGAACAATTGCAAGCTAAGGCTTTGTATATCATATCAAATCATATTgagatcatttat-----------tttttcaacagTTAACAGAAGCTgttggtaaaagaagaaaag-ctgtTTCTATAAATACCACTGAAGAAGAcacttaaaatgaatatat---ttttt-----ccttaagccagaatttcaatcatttttatgTCAATTCCACAAGAAAAAGCCCTGATATTATACAGCTCTTTCCACATTCTTGGGTACTAt-actattatcttcttgatgCACATGCCCAGTTCCTATTAAATACTAACAGGGACTCTGCACAGAGATCCTGGGCACACAGTAGCCCTGAGCAGCTTTCACCCCACAGATACGAATATGGGACATACTTTCCTGATGGGCGCTAGCCATGCATTAAAGTGGGTTATATTTCCATTAATGTGCCTTATGAAAGGAAATTGCCCTGTCCTGAGATTATATGGATGGAGACCAGTAGACA--GGTCCCAAACTATCTTCATTTGAAATTGCTTTAGAAAAAGACATGAACAG-TTGATTAACACTCAGTAGGTGTGCCTACACACATCCCTTTTAGCTATACATCACACATCTTTATTGTATGGAAGAGACAGTGATTA-TATCCTTTGTCTAGATTTAGAATCCAATGGCATCTTCATG--------CTTCAATCTATAAAGCCTAATTGGTAATGTCTCTGAGTTCTGTTTCTACTCTTCTTCCACTTGTTATAACCGTATCAACTCTCCCCAGGTCTCCCACAGGCATTTCTGGAAAtagttgaaaatataaaaatccaaaGTAGACCAGATTGCAAGCAAAAATCACCATGCTGTGTCTGCCGTgttcttgtattttatctctggtt

a score=28036
s chr3           151571115 2538 + 160039680 AAACAAGATGGAAGGAGCTCTGAGTCCCAAAGTGGAAGCCAAAGTAGAGATTTCCCAGGACATAGAAACAGCTTCACGGTAAATGGTTTATCAGTGCAGAAATGTGACCTAGGCACACAGG------------CCAGGCACACAGTGGTGCAGATCAGTGTGGAGAACGTGGGGCCTGAGACCCTAAATGGCT-GGGTAGCAGACAACCCAATCTTCAGCTGATGAAACAAAACTGAGGTATGCATAT---TAAAATAACAGCCTTGCAGAAATGTGTGTTCACTTTATCTTTTGCT---------TAGTGGACAAGCATTCTAGAGGCTTAGGACACTACATCACATTTAGCTTGGCTGCAG--ACACTCAGACACTGTCACACGCACACTTCTTAGGAGCGTGTTGGAAGATGATCCACAAATAGTGGGCTCATTTACTAAGTTTTCTGAATGGTGGTCAACTGAAAGAGAGAATGATGAAAGAAA----TGATAACTTTAAAGACTGTTGACAGATGGAATTTACCTAGTC-------ATAGAGAGGAAAGCAAACACAGGCATTTCAAAGAA-----AAATATGGGAAGATGATCAATCTTATTCGTGATTAATTACATCTCAATTTGAATATGAAATTGAACTCTTTGGCATGCAtcttagttaggattttactgctgaacagacaccatggtcaaggtaactcttataaggacaacatttcattggggctggcttacaggttaaaaggttcagtccagtatcatcaaggtgagagcatggcagcatccaagcagacatggcgcaggaggaatgaagagttcttac--ttcttcatctgaaggccactagaagaagactgtcttccaggcagctaggacaaggatcttaaagcccatgcccatggtgacacacctactcccacaaggccacacctcatattagtgtcactccctgagccaagctcatacaaaccctcacaGCATGTAAGCCTTGCGTGGGAGCTTCAAGCTATGGGCTTAGTCCTCAACCATAGCAGAATGCCTCCAGATGAGTATCAGAAAACACTGTTTAAAAAGGCAGTATTGCATACAACAAAGTCTCTTTAATTAGAGGCGAAAGTACTTCCCAGGAGACTGAACAG--GCTGTGAGTCAGATCTCAGTGACAATGAAAGAGTCGCGTACTGTTGGCCTTGCCTCAAGGATGCTTC-AAGCGTGTTTCTGGGGACAGCTCAGCTTTTATAGTGGAAGCCTGGGGGTTCTTT-TAAAGAGGAAATGAAAGTAGAAAAACAACTGAATGACTAGTGGATGAGCCACCACATTGAGCTACTTCAGGAGCGCTGGATATCCACTCATTGAATTATAAAGGCTATGTGTGTGCTCTACATGTATATAAAACATTCATCAACACATCAAGGCTATTTTGGTTTTCCTTTCTAAGAtttattttttcttttatatgtaggaatatttttttctgcatgcatgtatgtgcaccaaatggtacctgatgttcatgggggccagaagagtgtgctatatgccctggaactggaatttcagatagttggtctactatatgggtgctgagaactgagtgcaggacctctgagagaatagcaagtgcccatcgcacagagctgtctctccagGCTGTTTTGTAAATAACTTTTTCCGTTTTTTTATTTATGAGGCGTATTATCCCTTACAGAGACGTTTAATGTTTGGGAGATTTTTTTTTTCTTTTGTAGAAAACTCttgtcaactttttccttcagagtttctagttttatatcatgcatagaaaagccatcctctatcaaagattctaaaatattcacttctattttcttcaactgttgttggaattttactttttagtatgaaattcattgctccagctaaaattgatttcagtgaagtatggattttcattacaacccctcccccacacccaaaggctaactagttttcttggcatcatttcttgaatagccaacctgttcttcatgaaactgaaatagtacattaacaaaaaatactaaaaa----ttcatataaaaatgaaactggctcaaaacttttcttttctcatt-ttcattctattgatctTGCTTTAGTTCGATGTTTTAAAATATGAATGGAAAGACAAAAAAGAATGAATATAAATGCAT-GGAGCCAGTCCA---CCTGCCTGGGGGATTATAGACTT-----CATCC--ATCTCATGGATGGATACGAAGGTCCACACTGGCAGAGAGAAAACAGGAATGTGTCTGTCCTTCTCTTTGTCAGCCCAATTTAGCTTCAGGCTAGGAA--------CATATTTTGCTTATAAACTTTGGCTTGAGAGAACTACTTTTCATCCAACA--------TCAGTCTATATGGCTGGCATACAGTA---TGTGCGGAAGAAGAGTAATTGTTGAGATAAAGTCTGTGTTGTCATTAACTACATAATCAAACAAAGGTAATTACACAAAGAT-AGTAAGCATAAAAATGGAT-----GGAGA--------ACAGTAACCAGATTCTGCTCAGGACTTTGAAATAGCTATTCA-AGAAACTCT------GACATGTCACATCCAGTCAGGACCCAAGTAAGGATTAGGA
s HiC_scaffold_1 138179662 1993 + 233722169 aaaaaagagggagggaaTTTGTAAATAAGAAGCTGAGGACACGATACAGTTTACCAGTGTCAGAGAAGCAACATCGGATGAAAT-------------AGAAAATGGCCTTAGAGGTACAGGGCCTCTAGAAGTCCAGGCCCACAGTAGTGCAGAGCATTGTGGAGAGAGTGGG-CATCAGAGCACACGTGGCCAGGGGAGCAGAT----TGATCTTACTTGATTGACACAGAAATCAGCAGTAATTGGAGGTAATACATCAATCTTGCAGA-------GGACAGTGTATATTTAACTGGGGGGGTCTGGGGAACAGGAATCTCAGATCCCCTGACTGCTATATGTTATGTGGGTTGGCTATTGGAAAATTCAGAAACTATCAACTATACACACCAGCAGAGCAGGCTAGCAGCAGATTCACAAACAGTAGACTCATCTGTTTAGCTTTCTGAATGATAGTTAAGTCAAAGTTAGAA--ATgtccacaatttttaaaaactgtaaggaTTGTTGACAGATGTAACCTGCCTGTTCTCCTTGGGTACAAAAGAAATCTGAGATGGACACTACAAAGAATGGTGAAATATCAAATCATGTTCAGTTTATGCAGTGATTAAttacttctcaaaacaaacacagaactgCAA-CCTTAGCATGCA------------------------------------------------------------------------------------------------------AATGTGATC--------------------TCTAAGC-------------------TTGAAAGTTCTGATTATCCTTCAAATG-----CAATAAAATAGCA----CTTCTAGGTAGATA--------------------------------------------CCACAA--------------------------------------------------------------------------------------------------------------AGAATG---------------TAGAAAATGTT---------AGGAATATTTCTTATTATAAAGAC---TTGGTTAGAAG-GAAAACGCACCCCAGGA---TGGCCAGATGCTACAACTCAGATCCCAGTGACCATGACTGAGTCTCATGCGTTTGGTCCAACCTCAAGGAAACTCCAAAGAATGTTTC----------------TTTAT-GTGAGGACCTCTGCTTCATTTGCAAAGAAGGACT-------GAAAAACAAGTGAGAGGCCGGTGGCTGAGCCACCAGAGCCATCCGCATAAGGATAGCTATGTATCATCTCACTGAATGGGAAGAGCTGTGTGAGAG-TGTGCCTGTGTG---------CACCTCCATGTC---TCTGTCTGGATCTACCT-------------------------------GAGTGTT---------ACACATGAAAATACACC-------------------------------------------------------------------------TCTGCTCTATAAATG-------------------------------------------------------TGTTTTTCTAGGGTTTTATGT-------------CTCAATTTTATTCATGATAC---TTATTCTTTAcagatatttttaatgt-------------------tttcataggCAGCTCTC-CCAAGCATTTTCTTTATGGTTTCTGGCTTTATATCATGTATAG-AAAGTTATCTTCTAtcaaagattataaaatattcactcccatttttttcaattgttgtcagaattttactttttaatataaaattcatcGCTCTGTCTGAAATTGATTTCAGTGCAGTATGGATTTTCATTACATTTCCCC-------CCCAAAGGCTACCTAGTTTTCTCAGCATCATTG-TTGAATAACTAAGTTGTTACCCATGAATTTCAAATATTATATtgac--aaaattctaaaaaaattttcATAGAAAACTGAAACCAGTCTCAAAttcttcttcctttattattCAACTTTAAAATCTTACCATAGTCCTGT-TTTTGAACTAGAAATTGAAAGAGGAGAAAGGTTggatatgaatatatcaaatttaGTTCAAATTATGCCCAGAGGATTGCAGATTTTTGAGCCCCCAAACCTCACATATGGGCAGGAAAGGTCATTTTGCAAGTGAGAAAGCTCAAAGATGTCTGTACCTAACTTTATCAGCTGCATTCAGCCACAGGCTTCCAAGTTCCAGCCCCGTTCTGCTCA---------ACATGGGAACATTTTCATCCATCTAACAAATAGTTTTTGTTCTAC-TGTGTGGCATGCGCTGTTCTGGGCAG-AGAAGAAAAAATCTTAGGA-------------------AAACAAATAAGCACATACATAAGTTTACACAGCGATGAGTACAAACAAAAACGGAGAACGAGGAGATGAGACTGACCGTGACTAGGGTTTGCTGGGAGCTCTGGTATACCTGAACAGGGAAACTCTGTGAAAGACGTG----GTTGAGTCACAATCTGAGTGAGGGGCAGGA

a score=38807
s chr3           151575167 1292 + 160039680 GAATAGAGAATTTGAATATCTGTGGGAAAGGAA-GACTCCAGTG---AGAATGAATAGTGAGACTGCGTTAAAGCTGAGGACTGGTCAGGCAAGCTGACCTCAAAGGATATCGCCAGCCATGGTTTAAAGGCAGGTTCAGAGTCATAGCTTCTAAGCTTTCAAAAGAGCTCACTGTCCTAAACGCAG-ATCCAATCTGTTTAGGAAATT---------CTTCCTGCTT---ATTTTATTA-TATTGCCATAAGAGAACCCATATTCTAGGGTTTTCTCGCTTGTGCTCCCCCTA---CCAAAGCCACTGTGTCAATAAACAGGAAGGTAAGGCCTCAGCTCTCTGAACAGAAACTGAACTCAGAAAACAGAACTAGCAGAAACCACAGCTGCCTCTATCACTCGGTTGTTACATCTACTGTGAAATTTTTCATCCTGCTATTTCTTTCTCGGGTGCTTCGCCGTCTTTTTATTACATGAACaataccagttaacatctattaacgtcacttactatgcacccagcagtgttctggggccttccacttgtattaactcattgaatcttcacagccatcctgtggagtcagaaccgttattattcccacttaacagatgatggaactcaagtgtagattctgcccacggtcacacagccagtgagctgaggagctgggatttgaatacaagggatatgtctcctgagtctgagtact-agccattatgctgtGGTGAGGCCCCAGCACACTTGTCAAAGATGTCGGGTTTTTGATTGATGCTAAATAACTTAGAGAACCAGCA---GAGAATTATTTAACAAAGACAACTTTCTAATAACAGGGGCTTACAGTGTGATTATTAGCAGGTCTTTTACATTTGGGTT-TTTAGTCCAACTACCCTATTTTTAAAACATATTCTC-TCTGCTTGATGCCGATAGCCAATTTCTTCTATCTCTATGCATTGCCTCTTGTAGTCTAGCAATGCCTTAAGCATCCTTGGAGATGAGTCTTG----GAACACTTCATGTCACTCTTTGATGAGAGGACCA----CACGTTTTACTTCAGTTTGGGAATATTCAAGCCAGTCATCAATGTGCGCAGAGGTGCAGTGGCAATTCTCCTGAATAAAGGAAGAAACCAGAAACAAGTGCCTTTTTGTGATTGACTCACCTACTGCTCCTACTCACTGACTGACTCAGGGCTGCAATTAGG-GAGAATGCTTAGTAATTACCAAGATATTCACTCAGTGTTCGCACAGTGGGTGAATGTTGCCTGGCA-ATGCTAACACATGCCACCTCTCACACTCTTGTCTTTATATTTCT
s HiC_scaffold_1 138181708 1261 + 233722169 GAGTACAGATTTAGAGGATTcgaggcaaagaaaaggctgcaGTGCTTGGAGTTGCT-GTGGG---GCACCAAGCATGGAAGTTCACCAAGCAAGT---------AGAACAGTGTGGGCCATGCTTAGGACAcgattttagattttaaattgatAGGTTTTCAGAAGAGTTCACAACCCTGAACTCAACACTCCGCCTATGCAGGAAATCTTGCAGGAGCTTCCTGCTTTACCTTTCATTAGTACCACCATCAAA--AGTTTTACTCTAGCCTTTTCTTACAGATGGTCCCCCTGGAGCCAAAGACAGTG-----ATAATTAGTGCAGAATGGCTTCTAC--------------CAGAACTC-----------TTTTCCAGAACTGTGACTGATTTTGTCATTCTCTTGTTATATCTTCTGTGAAGTTTTTTCTCCTACTATTTCTGATTTTGGTGTTTTGttgcattttcattatattaataATAGCAGTTAACATCTATTAATGTCACTTACTACCCACCAGGCAGTATTCTGGGGG-TTCCACTTGTATTAGCTCATTGAATCTTCACAGCTATCCTGTGGAGCCAGAGCTGTTACTACTCCCACTTAACAGATGATAGAACTGAAGCATAGACTCTGCCCATGGTGACACAGCCAGGAAGTGCAGCAGCTGGGATTTGAATATGAACAATGTGTCTCTGGAGCCTGGGAGCTTCGCCATCATGCTTTGCTGCATCCCTGAAGCACTTGTCAGTGATGCTGAGTATTTGATTGATGCTGAATACCTCAGAGAACTAGCAGAGGAgaattatttaagaaatacaacCTCTTAGTATCAAGAGCCTACAGTGTGATTATTATTAGGCTTCTCACATGCATTTTCTCTAATACAACAATCC----CTTAAAGCAGAGCCCCTTCTGGCTCATGCC-ATAGCCAATGTCTCATTTTGCCCCATACTTCTGTTCAGTGCCAAGCAATGCCTCAA-CATCCTCAGAGGAGAGGCTTGGACAGAGCCCTGTGGGTCACCTTGAGGTCATAGAACTCCATTCATGTTTTCACTTGTCCAGAAAACACTTGTGCTAGCCATCAATCCAAGCAACACTCCAGTAGTAATTCTTTGCCATaactgaagaaaacagaaacaaatgccTTCTC-TGA-TGGCTCTTCTATTTCTAGAGTTT----ATTGATTTAGGATTCCAATTAGGCAATTATGCTTGA-------CAAGAGAT--ACTCAATGCTCATAGAGCAGATGAATCATGCCCTTCGTATGCTGACAAATTCAGTCtctcacactctc-tctctctctttct

a score=18327
s chr3           151583065 663 + 160039680 AGCTGGGTGGGAACTACATACATAATTTGGTTATTAGCCCTTCTATTATT-TGAATGTTTTAAGTATTACTTAATGAACACAAAGCCCAA----CATCTTGAAACACTAAGTAGCAAGCTCAGA---AGCCCTTTCTTCCCCTTGCCTTTGACCCTTCC----ATTTGT-------TTTATTTCTTTCCCCTTATTCCCACGAACACTGAGTCCTGACTGCCAGCCTAAGAGTATGAAAAAAAGCATACATTTCCGTGGATTTATAGTGTT--------ACTAGTGTTATAAATCTCTGGAAAGGACCACACTGATGAACA--------TGGATAGGCAATTTCCTTGATCTCCAACTATTAAAAGGCTAAAAATATTAGAGCAATTATTCTCCCTTGAATTCCTCTGTTTCCACAAAACCTCATTCTCTAAGCCCACTAGCACTTTATATTCCCTA-AGGGAAGCAAGAACTCATACCTAAATCATTTTAGGAAGTTTGACAGACAGGCCAATTTTCCAAAAGTATAAGG-TTTCTACTAAACTTTCTGTTCAGCTTTTTCTGTTTG-TTGTTTGCCTGTGAGAAAACATGCCAAATGTGCCTCATATATATTGGGTACATGGCACCTAAACT----TCTCCTGATCTCAGC-------TTCACATTATT---ACCTGGACACCATGAGAGTCAGGTCTCCTAGAGCCTGGTAG
s HiC_scaffold_1 138187049 696 + 233722169 AGCTGAGTGGTTAATACATGGATATTTCATACTGTATTTCTTGTATCTTTACAAATATCTTAAGT--TATTTAGTAAGTGTTAAACCTAAACCCCACTGTTAG---CTAAATAATAAATTCAGAGCTATTGctctctttttcttgtctttcctcACTCCTCTGATTTGTCCATCATTTTCTCCTTGTCCCCTGATTCCCACAGATGCTACCTATTGGGTTCCAGGTACAGTG-GTgcagaaatataaacatttc------tctCTGGTGTTTGTCTTTTACTAGTATTGTTAATCATTTGAAAGGATCACACTTAGGAACACGTGTACATGAATAGGTAATTTC-TTGACCTCTAATCACCAAAGGAATAAAAGTATTAGAGCAATCATTCTCTTTTGAATCCATCTATTCCCAGGAAACGCTATTAGTTAAGCCCAGTAG----TTTCATGCCCTGGAGGCAAGCAAAAACTCTCACCTAAATCATATTATGAAAGTTGACAGACAGGCCAATTTTCCAAAAGTTCAAGGTTTTCTATTAACATTTCTAGG-agggttatttgtttgtttgtttctaggtGAGAAAATATGCCATGC-TAGTTCAAAGATATTTCTCATATGGACCTTAAGCTTTCCTTTCCTAATCTCAACGcacattcttaaattatttgcaCCAGGGCACCATTTCTGTCACTTCTCTAAGGACCCAGCAg

a score=29070
s chr3           151604750 1021 + 160039680 TTTTTATAATA-CAAAGGAAGCATGTGATACTGTTATACTACAAGAGAAAATTCTGTAGAACATAAGAATGTTTCATTTTACTGTAGGCTATATTTTAGCCTTT-GACATGAAAACTTGATAAAACATAAAAGTGATTT--ACTGTGAAACAGAAAT-CTGTTGTTTAGTAAAATGTTCAGAAAAGCAGCCAAGAGAGTAGCCTGGTGAACCTCATAACAGGCTGCAATCAGAAACATTCATTGTGGACAGCGTGCTCATTCTAAAGTACAAACTCCAATCCAGTTGATTACTGTTATAGTTTGGTTTCTGACACAATGATTAGCAATACCCATATTTTAAAAGGTTTTGAAAAAAGTTAAATGAGTAAAATATGTGCTTGTAATTAGCAGCGTATTGTGTAACAAAATGGGCTGGGTTGCACCACGGCCACATAATTATTTCTTTAACATGTAAGCTGTCACTTGAAAATTTAACTATGATTTTAGTTGATAAGTGAGTTGGGGGAGGgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagtgagagTGTGTGTGTGCATGTGTAATCTGAAACAAACATACACGATTAACCACAGACATTTAAAATTCTGTAAGTTACCTTTATCTTCACTCAGTGATAATTAAAATACCAACCCCTT--AAAAAATGTCCTGGAGAGCACGCCAGTGTCACCAGCTAT-------GAAAAGAGAGATGGGACGTTTGAATAGTGCAGTTTTGAATGATAGT-TGCAGAAATGGCATAGACTAATGTTGGGACTTAGAGTTCAGTGACCACTGGTGCTGAGACAGAATGTGAATCTAAGGGTGTGAGGTGACATTATCTCCACTCTAGGACAGTGTGCTCAGAATTGAAACAAAAGG--CTGTCATCTGCCACAGCTGGCTAGTGGACCATTTTGGTGCAAATTTACTATGACAGCTTGGGATATAACTCCCTAACCCCATCTTTGTCCCCAAACAATATCGACAAGT
s HiC_scaffold_1 138215482  918 + 233722169 TTTTCATGATAACACAGAAAGTACACAATATTGTTACATTGCAAGAGAACATTCTGTAGAACATAACTatggttcattttattttgggCTATGATTTGTCCTTTTGACATTAAAGCTTGACCCCAAGGTAAAATTATCTTAAccataaaagagaaatacagttgTTCAACAAAGAGCTTCGAGAAG-----------GAAGCCTGACAGACGTCGTGGCAGATTGCAATCAGGAACATTCACTGCAGACAAGGCATTTATGTTAAAATACAAACTCTAAGTTACTTGATGACTGTTACTGTTTGACTTCTGACATGATGATTAACAATACACTTTTCtaagaatattttctcaaaagttaaatgggaaaaatatactCATGTAATTAGTGACAAATTGTCTGCTAAAGTGGACTGATCTGCATTGTGGTCATGTAATTACTTCCTTAAAGTGTAAGCTGTCACTTAAAAATTGAACTACACTTTACGCTCATGAGTGGTTTGGGGAA---------------------TTGGAAAAA-----------------------------------------------------------CATACAGAATCCGAAAAGAACACACAGAATTAATTGTAGACATTAAAAATTCGGTAAATCACCTTTATCCCCACACAATGACAGTTTAAGTACTAGCCACTTCACAAAAATATCTCTGACTCTGTATCAGAGATTCCAAAtaccaaaatagaaaagaaaaagagaatgttaaGAGTTGGTTGTTTTGAGCAATCATATACAAACACTGAATATACTAACATTAGGAAATATACCTCAATA---AAGGATACTAAACTAGAATATACGTTCAGG----------GATACCATTTCTATTCT----------------AATCAAGGTAAAAAGCACTATGATCTACCATAACTGCCAACttgattattttgttaaaaatttactATGGTGACTTGGGAATGATTTTCTTAATCTCATCTTTCTCCCCAAACAACATATGAAAgt

a score=32966
s chr3           151605883 2441 + 160039680 AGGAAATAACGCCAGTGTGAAAACAGTATGTGTAAAGTGAAAATTAAAAACCATTTCCACTCCATATCGAAGAGGTTTTGCAATTCAAAGTATCCTGTATTCAACTTTACACATTTATGCTCAGTTCACTCTTATTTTTACTTATCCCAGTCCTGCCAAGGACCAGATGCACATTAAA----------GCATTAAAATGGGTGAATCACAAATGTCAGCTTCCCTTAGCACTAAGCAGGAGTATTG-CATTTCCCTCACAAGCGATAAAATAAC-------------ATCCTAACCTCTAAACATCTCTCCTCGAGTTATTTTATTTTGTACTTTTATGGAACATTATCATACTTTCCCAGGGTGGTTTTTTTTTTCTTTTTCAACTGAGGACCTATTTATTTGAAGAAAAAAACTATTATCAACggggctggagagatggctcactagttaagagcacgagccgctcttgcagagagaggaacctcagttaggttccagtacccaagttaaaggctcacaaccacctgcatctccaactccaggggaccagtgcttctggcttccttgggtacctgcgcttgtgctcatacacataactttaaaataataaaaaaATCAACTTTTAAAAATATTTCACCAATAATCCCACTTTGGTTTTTAGATTTCATGTATTCGAAATAAATGTTTAGAAAATATCCTTACAGTCCGTATTACTATTGGAGTTTAAGAAAGGTAGAGAGGGAAGAGGAGAAAATTTCAAAGATGAAAAAAAAAAACCAACAACAACAACAACAACTATTTTGCAGTCTTGTGTTT---------TATGCTGACACAAGGCATTTGT--GCTTTTGCTGACATTAGTCAAATTCTAAACAAAACGTTAGACCTGTCCAGCCCTAATTAATCCTAGAGTTATTTTCATCATCTTTTTTATACTGCTCAACCAAAATTGTTTCAAAATTAGCCACCACTTGAAATCACCTTTGAGGTTTTATAAAAATAAAGAATTTCACAAGCCATTGTTATACTTAAA--ATGAAGGAAAGGGGCCAAAATAGTGCTCTGGACCCCAAATTTTCTGCCACCCATTTGTATCAGGCAAAGGTGGCATTTGTGCACACAAGTCATG--TCACTAGATATATTTTAGAGATGCACATTCAAGTCATTTATTCAGGAAGGATTGAGTCAAGACCGCAGAACTCTAAGTGAATCCATGCTGCTTGCTCGACTGCCTTAGACTCACATCTCAGCTCCGTGGGTAGGA---TTATTAAGGATTAAATATGTTTAA-----------------TGCTTCCAAGGCAGA-------------------------CCAATAGGGAGTGAGGCATCAG-------------------AGGCAAGATGAAGTCACAGGAAGCCAAGG--------GGAAAAAACCTTCACATCCTCTCTACCTGAAAGGTTTTGAA---AATGAAAACATCTGATTTGC--------------------ACCTAGGAAAAGCCATTCCAT---TTTCAAAATGGAAGAAAGCTTTGCAGAGGGCAAGTTTATTGGCAAAATTACAAGT-----AAATGTGAGTGTAG-TAGAAGAGGTGCTGTCGGGCACATT------------CCAAGTGGTCAGGCTGTACC---------AGTAGCTTATTTgtggcttctaggctggctctgagaactgtcatagcttctgtcactc---aaagatgataagcttcacttgttttaggcagttcatccctcacacttaaaagcaagataatcac------atttcacctccctgtgat----------gtgacgc----ctcaaaaggcccagtgacacacaa----agtattgctaggttgtggagaagtcacctttagaagttggttaagta-tggtttcctgttttacacacattaacacacacacacacacacacacacacacacacacacacacacacacgagcgcgcgcacgagagagagagagagagagagagagagagagagagagagagagagattcaagggtagtaatgatgtgagggaggaggtcccatgcaataaaca-----aaacatggaggaaaacctgcctatgcgggctccatgcttcataaggagtctcccacaagcagaccatttctgagactcagccatatggtggaaccagccgtatggtggttctacacacgattgcctacttggctgtgttactacagaaatcacaggacttgtctaagacttgggCGATTTAAAAGCACAGaaaaatgaaaaagaaaaagagaaacatattctgatcagaagatgttcaaaccacattacagacatttaagccaagtagac--aaacgcagtgaatgagccaataagatgttgttcaatattgctaagacattaggaaaatacaaattaaagccacaatgagcagga----cacacctaccataattgatagaatT-TAAATGCATCAGTTTAGTAGAAAAGGATTTCAGTTATAAGTGTGTGTGCATCTAGAAATGGGATTAAAATAACTAATGCCAAGACTCACAGAATTAAGGAAGTGTAA-----TCGTTCACCATTACTACAGG-GGTTTTAATAGCCCTAACCCTA
s HiC_scaffold_1 138217127 2164 + 233722169 aagaaataacaccaGTGTAAAAACAGTATTTCTAAATT------------TCACTTTCATTTCATATCCAAGGTATTTTGCAATTCAAAGCACCCTGCATTCATCTTTACCCATGTATGGTCTGCTCAttcttctttttacttctatCAACTCTATCAAGTTCCAGATATacattaaatgtattaaatgtattaaaatgggTAACTCACAAATGTCAGTTTTCCTTGTCACTAAAGAGGTATATCATCTTTTCCCCCACAAGTGATAATATATCTTAATCTCTAAGTATCTTAATCTCTAAGTATATCTCCTTG-----TgatcttttttgcttttatggaaaaatatcataaatttcCTAGTGGGTTTTTTTT----------ACTAAGAAAcagtttg---agagaaaaaaattgata---------------------------------------------------------------------------------acCCTATTT----------------------------------------------------TTCTTTG-------------------------------------------------------------------------------------GGGTTTTATATATTATGtactaaaaata----ttcagaaaatat--ttagagTTCATTAATTTCTTGGAGTTAAAGAAAAATGGAGAGCGCAGAGTATAAAATATCAAAGATGAAAGA--------------------GACACTTACCTTGCAATCCAGTGTTTACAGTTAAACATGTCAACACAAGTCATTTGCTGGCTTTTATACac---agcaaaatttttatttaaacat------------gtccTAATCACATCTACTGCCATCTACATAATTCTACATGTGTTGctcaataaaaa-cattttgaagtcAGCTTTGTATTTTAATTGCTCTTGA-GttgtataaaattaaagaaattcacaAGTCATTGGTTTCCTGCAAATATAAGAGAAGGGGACTAAGGTATGGGTTTCGATATGGAGTTTTCTGTCATTCATTAATATAAGGTAAATACAGTATAAGTAGGTTCAGATCGTGCATTACTGGATATATGCTACATGTGTACATTCATCTTATTAAGGCAAAAACAACTAAGGCATAACTGCA-----------------ATGTCACT------ACTGTTTCAGTGTCAGATCTT-GCTC-------AAGACATTTGTTAGGGATTAAACATGCTTAAACTTGGCATATGTATCTTGaatcaaaaacagaatattttgtaCTTCACTAAACTTACTCTGTAAGGAGCAAAGTAGCAAAAATTGAGGTGAAAGAGGTAGGCAAAAGCAAGTTCATGGAGGTCATTGTAAGTACTGGTAAAATGATTCACTTTGTCTTCTTTTGGAAGATTTTAGATATGATGACAACATCGGAtttacattttaggaaaaaatgtgCAACTTAGGAAAAACACTGTTCTTCATTTCAGTGTAGAACAGAGATTCGCAGAGTTCAAGTTTAAGAGAGGAGAGACAAGTTAAGAAAACATGATTGTGGATAATAGAGATAGTATTTGGTAAGCTGACCCACTGCTACCAAATGATGAAGTGGTTCCTGAATTCTTAGCAATACAGTCACAGCTGCTAGGCTCGTTTAGAACATTTCTGTTG-----GTGAGTCAGAAAAGACAATGAACCTCAATGGATCTTGACAGCATA----TGACAATTAAAGCAAAACTAAATTCAGCACGACTTCAGGTCCCTCTGCTCCTGATACCAGTGACACAGGACGTGAAGCACCACATGATACACAATCAGTGCATTGctgtattacaaaaaaaaaatctctacaatCCAGTTAAGTAGTGGTTTCAAGTTCTGCAC-------------------------------------------------CTGGACCCTATGTC------------------------------------------aaagat-----ggtggtggtggtgtgagGTGGGAATGCTCACAtcataaagagagagagaaatgaggagtAACCTG---ATGGCAGCCCCCTGCTGGACAGGA-------CACAAAGTG---------GAG----AGGTAGATGAGAG----AGTCTTGTAGCAATTCTTCACAAGACTGTCTATCCTACTATATTACAGGGAGAATCA----------ATAATTCTAGGATggtt--------cagaaaaataataaaaaata--------tcaatCCAATTAGAAAATGTATAAAAGGCATGAC--ATATTTAATTGAAGAAGACATAGATATgataaataaacacatgaaaaaatgttctacatcattaagtcattaggaaaatacaaattaaaaccacaatgagatacagTTTTATACCTATCAGAattgctaaaattaaaaatgcatcaatttactagaaaaaa-----aactacaaaggtGTATGTACCTAATAATggcttcaaaataattaaaagggaGCCTTACAAcactaaggaaatgaaaaagacaagctTACAATTATAGTTGGAGATTTTAATATGCCTCACTCCA

a score=21165
s chr3           151609493 2438 + 160039680 AGGCAAAGGAATATTGAAACTCTTCTA-------ATTCCACAGATCAGGCATTAACATAGGAATTCCATGAGCTATGCTCCCCCATATTGCTTCTAGAATAATTATAATCT--TAACCACTGCTACACTACCTAAGGCTTCTATAGGCTA--------GATAACCAGATCAGCATTACAACTCTACTTTCTATTATTGTAATGACACTGCCCTTAGTTCTGACAACTAAGGGCCACAATACAACCCTTGATCCCCCAGAAGCAGCATCAGTGCTGATATGAGAGAGTCTAGTCCCATGCCTGCAGCCCTG-----ACACACACCTTCAAGAATCTCAGGAAAGCTTCTTGTCCATAGGGCTGTTGTGCCCCTTCCTGCCTGTATGGTGGCACTCAGGTGGTGGCACTCAGCT--------------------CTGACATGTCTGTC----TCCTTGACCCAACTTCTTCCTTGCTATTATCCTGAAGAAATTCTGACCTCTCCAAAGCCCCTATCCCTGCTCTGGTTCCTCAGTGACTTGCTAACAGACCTTAGG-ACAAAATATGGATGTCTTTGCCAGAACAAGAAAATTTAATTTATGAACTAAAATATCTCCTATGACAGTAAATTTTCTCACAGCTACGCTTTTCTCCTTCTATAGCTGATCTAACATCTTCAAGATCTACCTCAACACATTTCTCG--TCCTTACTGCCACATAATGATGAGAGCCAACAACTGCCTCAGTTAAAACACTTCTTCCTGTGGCAGACAGTGTTTACCTCCACAGCCTGATGAGACTCCTCTGC--------CTTTGCTGTGTACCCGTAGGAAAGCAAATGGGCTGATGGCAGATA---ATAGGAACGAGTGTCACTCTGCCGGTCATCTGAAGCGTGCTCCTCT-TCAGCTCTTTGTCTTTGTGAAGGTGATAGCTTAAAAACCTTTGGCTTGCTTCGAATCTTGAAGAAAATTTAAAATTCCCAAGGTTTTCAGGTTCATCCCTTGAAATGTCTCCATCCTTGGGTTCATAGCAATATTCTATTTTAAAAACCTACACCCTGAT-TTGGTGTAAAAAAAATTTCAAAATTATGTGCTTAGTCTCTCTCAGGGTTTTGCTACTCTAAAGGTTAGAGGAGTCTGGGACTGGTAATTAATTACACT--TTTTAAAAGTTGTCTAAGAAGACCCTGGATTTACATTGTATTGCCCTTGTTTAACAATTGGGTATCTGAGCCTATAATTTGTT--------TTTCAAAGCATTAACAAGGTTAAGAGAAACCGACTCTTTCCTCAATTACAATTTTTAAGCTGGTTGTATCCACATGCAGTTCTTGCACGAAA-TACAGTAATTGTATTTTTTTACTACTTCTCATTTGTCCTATAG-TGATCCCAACTAACCACAGGTAAACATCTTCTTAACAAGAATGATGCCACAATATCGTATGCTAAGAGTTGGCTTTTGTTTTCAAGCATCACATAAAGAATTacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacTGGAACCTGGGGCATTAAGTTTAGTGCTA-GTTTATATCTGGGACCCTACGATGAAGG-GTCCACACGAGAGGTGAGAAAGATA--GTACAGCAGGCGAGGTTACAAAGACAACTCCCACA---GAGTGACTGCTCAATCTGGCTTGGCCATCTTCTACAAGGGACACTGGGTATTTATATCTCAGAAAGCCTGTGGGTGGGTTGGGGTGTAGAGAAAGTGAGGATATGTTGAAGTTGTCAGAATCAAATCATTTTTGTTAACAGTAAGGAAAAAAAAGAAAAGAAAACTGGGAGATTATAAAATGATGGCA------------AGAAGTGTTCTCGAGCATTTACTTTCTGATAACTATTAAAGAAGAGTTTT--------TGGAACCACA--AGCTGGCACAGAAGAGTACAACCATCTACAAGCATACTTCTGCGCATTTCTGCTCGCCATCCATCTGTTCAGACTCATACTCACGACACACTGCGAATTGGTTCAGCCTATGGATATCATTCCGGAGATTCTCATGTGAACCCCATGTTTGTCTGCACAGGATCCCCTTTGTTGAACCTCTTTGAATAAGTTCATAATTTGTAATGATATACATATTCCTGTTGTGACCATCTGCAATTGCCACTGTAATCTTATTAACAGCTAAGACTCAGAATCTTTTGGGGATGACCTTTCTCTG----------ATACATTTTTCCCAGCtaaataaattttttaataaaatatGGTAATAATTTACCAGAATCCTTATCTCATTTTTCAACAGTATTTTCCCATTA-GACATGAAACT------GCATCCAGGTGTTATCTGACCTCATCTAAGTTGGAGCCGAAGA-GCGAGTTAACCAGCAGAAGTGAGAGGT---------GAGGTGAGATGGGGCCAAGCTACACATTCATTCCCTGCAGCTGG-TGCAGTGA---GTG-AGTCAAGTGGAGCTGAAGCAGTAGGTAAAAATATATCTCCCATCCTCACAAGAA
s HiC_scaffold_1 138220968 2276 + 233722169 AGGCAAAGGACCACT----CATTTCTGTAATGATATTTCACAGGTTAAGAATGAATGTGAAAGTTCCAATAGATAC-----------------------TAAATATATTCTGATAAGCCATTTCATGCCTTCTGGGGTCAACATAATCTATTAATCAAGGTATTCAGATTCAGATAACAGCCTTATTGCCCATTTTGATAACTAAATTGACTGTAACTCTAATGGTTA-GTGTCACAATACATCCTTTGCCATTCCAAAATTACCATTCCTTTGGATGCAAGGGGGTCTAGTCC-ATGACAACAGCTCCACTGGTAGATTTACCAGTAGGGAT-----GGATGCT-CATGCCCACAAAGCCAGTGCTTTCCTTAATCCCT-TATGA--GTACCCAGATGGTGAGTCTCAGCTTTTAGTAGTTAAATACCATCCTGGCATTTCCATCAGACTCCT---CCCAACTTACATTAGGCTATCATGATGA-----------------------------CCGTGCTT------CCCAAAGATAAAATAACAGACTATAAATACCAACTCCAAGTATCCTTA----GATACTAAATCCTGTTTCA----CTAATGAATTTCTCTGGGTAAAAAGTCCTTTCTATGCAGCCTTATATTCTTTTCATACCTTATCTAACACCCTCAGTATTCACCTCAGCACACCGTCTGGTTTCTTGTTTGTACATAGGAGTGAGGTCCTACCATGATTTCACTTAAACTGTCTCTTCCCACA----ACTGTATTTATCCTCTCAA---------ACTCTGCTGTAATGTAATCTTGGTTATCCacctggaagaaatgaaaaatgatgagCTCGGATGTTCAGCAGAATGA-TGTCACTTTGCAAGTCATCAGAGGCACAGAGGTCTCTAAGATTCTCATCTCTAGGAATGGGAAG----ATGGTCCTTTTGCTAGTTTAGAGTACTCAAGTGTATTTGAAATTTC-AAGATTTTCAGATTCATCCACTGAAGtgtcaccattcctggattcagtgtcctattctttttctgttggtT---CCCTAATGTTGACATAAAAATCCATTTGAAGCCCTATACTCAGTCCTTTTTGAAGTTTCatgattc---atatt-------tattttacttacagtaTATGACACTATTTGTAGAATTTATTATAGAAGTCCTTTGGTTTTCATAGCAT-ACTCTCAGCTAGCAATTGGTTGACTGAGATTATCATTTATTATCTGAGTTTTCGGAG-------GAAGTTAACAGAAGCCAACCACTTT-TCAATTAATGTTCTTAAAATTGTCACAGTTACATGTGGTCTTTAAATAAAACTACAACAATCCATAAAACCTACCACTCCCCATTTTCCCTACAGCTCATTCTAATTAACTACAGTTAAA-GTTCTCTAAGTAATGATGGTGCCAATATATGCTATGTTAATACTTTA--TCTGTTACCAATTGTCCTACACAAAGTTCAATA-------------------------------GGAAACA-----------------------GGCCCTGAGGCAAAGAACTTTATGCTACAAATTTATTTGGTAACCTAAGCTGAAGAAGGAGGAAtgaaagactagaaaaataaagcacaaaaggCTGTGTTTTCAAAATGGTGCCAAAGTTTGAATAATGGCTCAATCTGGCTTGGTCATCTCCTAAGAAGGACCCTTGATATTTATATCTCAGGGAGCCT---AGTGTGGAGAGGTGTGAATAAGGAAAGAGTAATTTGTGTTCATCACAACC--------------------AGGAAACAAAGTGAAAAGCCAAAAGGATG---------TGATGGAAATGCCCCTATACATGAATGTTC---AGTAGTAACTATCTGATA---GTGACAAAATAGTCTTCCTCACTATGGGGCCACCATATTTTGCACCAAATA-------CTTCCACAAAGACA------------TCTGCCCAGCAGCTGTCTGTTAAACCTGAGACTGATGCTTTTCTTATGATTATTAAGGCCAGAGCTTAGTGTTTCAAAAGATCT-ATGTAATCCTGATTTTGATCTTTAAGAATTTTCCTTTACCACAAC-CTCAGAACACACTTGTACTTTGTTATAGCA----------TGTCATGATC-----CCATGAACGCTATACTCAAATAAATATC----------ATCATTTTGGAGA----CTTTCTCTgtgattgctttttgttttgtttttagattggcaaa----aaagtaaaagaaaaaatttatttaccaGCTCCTTTATCTCACT-------AG-----TCCCATGAGGGCATTAAGTTTCCCACACATCTAAGTACCACCTA----CATGAGAATGCAGGGAGAACATGTGGGTTTGGGACAGGAATTGAGAGGTCCCCACCAGACACTGAGGTTTTGACAAACTGCAGCTACTTT---TACAGCTGACTGAAATGACAGGTGAAACCAAAAGGATCTGAAGTAGCATA-AAAAACATGtctcaaa---acacaagaa

a score=63703
s chr3           151615702 1823 + 160039680 TAAAAAAGACATCATCTTTCCCTCTGATTGTTGATCTACAGTAAGTATTAAAG-GTATATTAAAATAAAACTAATTTTCAAAATAGTCACTTGACTAAA-----CTTTCAGAAGTGAACTGTGACTG-----ACTAAACAATATGCTGAGGTG-----GCTGAGTTCATTTCTTACTTTCTTTCTCTGAGGTTCGTTAGTCAACAGAAATTTGTTTCGACAGTCTCTGAGGAACTCATGAGCGATGATAGCACATTAGACCAATTGTTAGTTTTG-GAACA--------------AGTTTCAGTATCTTACAGGAAAAACTAATAGATCTTCAGGAAATATC-CAACACATTAACAAC--AATAAACATTT---CTGTGCTTCCAAATACAAAGAATTCCAATTAAAAGTAGATAACAATTGATAAAACAAATGCATTTCAAAAA-GAAAATGTTACTGCAATGTCGTAAAGAAAATACATGATTGCTTTCTGATCTGATTTAATTGAA----------------------------------TATTTTCTACTTCAGG-GTTGTGCTTTGA-CCCAGTAACT--ATTATCTCAACTAAGGACTGGGACCCAGTGCATCTCTGAGTACGATATGC-TATACCTTCATGACTGAACCTAAAGTATGATGTG----TGTAGATATTTTAACATAAATATGGGTTTTACATCAGCTTGTGTTCTGCAGAGAAACAAAAGCAT--ATTACTCA--TCTTGTCCTCATATTTCATTAAATAGAATTGAACAAGCTTATAATTCCAGAGTTTTGTTCTGTTTTCTTTTTCCTAGGTTCACCTTTAGAGAGGGATGATTTATACTTTCAAATAAGAAAGTGTATTTCTGGGGTGCGGCCCCAGCAGTACTTTTAGAAGACCT-GGATGTAAACAAAAAGCA-----GAAGTCACTGGCACAGATCTAAACTCCAGTCTTACTGCAGTAAGGAAATATATCCCATTTGAAAGCTGAAATTACCTTCCTCTACAACTTTTTCAAGCTTTGGAGAAATAATTAAGTTTCATCCCGGGTTTTGCTTATTCATGCAGAATGGAACTGAGACTTTTTTTTTAATTCAGCAGGCTAAATTCCATTTCACACTTTTGCCAGGTAATTCTCAGCTCAAGCCAACCTTGGGCTTGAGGGATTTCTTCTGAGTTGGGCTCAGGGAGACAAAAGAACATAATTTTGAATGCATAACAGTTCATTCCTGTATGAATTCAATTGTACCAAAGCCATACAACCTCAACTTATTTAATCAACTCGTTTCATAAGCAGAAAGCAAATGAAAAC-CAAGGAGTTCATCACTGCTTGATACTTAACATAATTAATAGAGTTTCCTGGCTTTGTATC---AAGGTTCATGTAACAGATATATT----CAGTGGAATTGTATGCCATGAGGACATACTAGCCTTGACATTTCTCATCTTTCATTTAGAATATGTCTTCATTCTAAACTCT-------------GTATGTGAAACCAGCCACCTTGCCCTCT---TAATAAAAGCAACATGACTTAATTTGAGGAAAATGCTGGGTGGCGGCTGGGAAATCACAGAATAATATCATGCTTCATAAAAGAAGTCATTCCATATCTTTATCTACACCTGTGCCTGTATGTGAACCTGCACCTGCAATGATGTATACTTCAAAGAAG------AGTCTGTTTTTCTCTAGTGAGAAAAT-----GTCTTTAAAATGGGTTCAATATTTTCATACCCCTCATAACACACATATTGGAAATAAGTCAGAGCTCAGGCCCAAACAACATGTTTAGAGGTACC----------TTCTAGGAATGAGAATTG-------TCATTTACATTATATTTC--TTTCTTCTTCTAATATAACTATAAAGTTAATTAAAATCATGTAATGAACTCATAAT-AAACTGCTTATTAAGGATCT
s HiC_scaffold_1 138225546 1929 + 233722169 TAAAAAAGACATC--TTTTTGCTGTGATTGTAGAACTACATTGACTCTGAAAGCACACACTATA-TGTAGTTCAGCTCCAAAatagtcactgagctaaatatttctttctaaaatgaatttaaagtacTTATAATAAAcattatgttaaaataaaattgtctattttatttcttatcctTGTT-TCATATGTTcatgaataaat-gtaatttttggaAGAGTTTTCTGAGGACTGCATGATAGATAA---CATATTAGAGAAATTATTGGTTTTGAGaacatttataaacataaaatcttCAGCATCTTCTATGAAAAACTAACAGATCTTCAGGAAAAATTTCAGCATATTAATAATGGAACAAACTATTGTCATGTGTTTCCTAAAATGGAAAGTATCGATTAGAGAAAGACAA-AATTGACAAAATGAA--CATCCCACAAATGCAAGTGGTACTTCAGTGTAGTGGAGAAAAGGAATGatt-ctttttaatcttatttaacTGTAATCTTATTTAACTGCAAACTTATTTAATCCTATTTAACTTCTACTTCTGGAGCTGTTCATGGAATTCAACGATTGTATTATCTCAACTAATTACTGGTTCTCATTGTATTAGTATGCATGACATACACAGGGTTTCATAATTCAATATAAAGTATGGGATAATTCTGTGAATACTGTAATGTAAGTATGGCTCTCACATTTGCATGTGTTCTTCAGGGAAACAAAAGCATCCATTATCTAAAGCTATTCctcacattttattaaatagaATTGAACATACTTGTAATTCTatagctgtatt-----ttattttttggaagctAACTTCCAGAAAACAATGATTTATGATTCTAAACATGAAAGTATATTTCTAGTGCACTGACACGACTGTGCTT--AGAAGAAGTAGGATGCAAACGAAAAGTAACGTGGAAATCACTGGCACAGATCTAAAATACAGTcttattaggaaaagaaaatatatttaatttgaaagCAGAAATTAC-TTCCTCTACAACTTTTTCAGGCTTTGGAGAAATAATTAAGTTTCATCATATGTTTTGCTTACTCATGCAGAATGTAAGTAAGACTATTTCTT-AATGCAGCTGCCTAAATTCCATTTCACACTTATGCCAGGTAATTCTCGGCTCAAGCCAACCTTGGGCTTGAGGGATTTCTTCTGCTTTGTGCTCAGGGAGAAAATAGAGCATAATTTTGAATGCAGCGCAGTTCATTCCAAGATTAATTCAATTGTACCAAAATTCTATAACCTCAGATTATTTAATCAACTCATTTCATAAGCAAAAAGCAAGTGCAAATGCAAACTGTTCAATGCTACTTGATAGTTAACATAATTAGTATAGTTATCTAGTTTTGGATTTCAAGAACTCATACTACACATATTCTTCAGCAGAGAAAAGTTATATTCTTATTGCATGATGGCATTAACATTTATCATCTTTCA-CTAGAATATGTCTTTACTCCAAATTCTGTATTGTGGAGAAGTATATGAAAATAATTCCCTCAATCTCTTCATCATAAAAGCAATATTACCTAACTTGGGGAGAA------------GATCAAGGATCACAGAGTAATATTGTGCTTTATGAAAGAATATATTTCATGTCATTATTTGCATCTCAATCTGTATGCAGATATCTATCTACTAGAATAGACTCTTCAAAAAggctttgtgcttttttttcccctaagaagAAAGTGTTCAGTTTTCAATACAGGTTCAAC-TTTCTGCATCAGTCATAAATCCCCCACATGAAATAGGTCAGAGCTCTGACCCAGA-AAAGTCTTTACAGGCTCCCCACCCCCTGCCCCAGGACT----ATTGCTTTTCTTCATGTAGgttgtttttcattctctttttacaCCACTATTACAAAGTCAACTAAGTTCGTTCAATGAACTCATCATCAAATTACTCAACTAGAATCT

a score=11146
s chr3           151635555 338 + 160039680 atatcatttgaaatgtaaataaagaaaatatctaat------aaaaTA---AAATAAAGTTACA----GGAACAGGTCTTTTAAG-TTGCTTGTGTGTTGTTTATGCTTAGTCAAAGTAATTGTTGCTATCGGCACTGCCTAGA-AGCTTTCCAAATAATTGCAGCTGAGCA--GAAATATCTCCTCAAATTAGATGTCTGCTTGTATAGTCTTATCTCCCTAGATTTAATAGCTAAATGGATAATTTCTCTCTGTCTACATCCTTCTCAA--AGTAAATGGTTTTGTTTCCTTGTGAATAACTACTTAATGCTAGCAACAGCT---AGATGGGCATAAGCTATCAAAAA--ACCTATGCCT
s HiC_scaffold_1 138259515 354 + 233722169 ATGTTATTATCAatccaaattaataaaatatatgttcCCCTAAAAATACTCATAAGAAATTACTTAATGGTATAGGTCTTTAAAAACTACTTCT-------TTATATTTAGTCAAGGTAATTATGAAGATAAGCACTTCCTAAACAGATTTCCAAACAGTTGCAATTGagcatgaaaatatttcttcaaattagATGTCTGCATGTGTAGTTTTATCTTCCTAAATTTAATAGCTAAGTAAATCATTTCTGTATGCCAAT-TCATTTTCCActggtaaatattttttcttcattgtgaATAACTCTTTGGTGCAAATGACGGTTAAGAGATTCATGTGAGCAGCTAAAAAATATCCATACCT

a score=42106
s chr3           151636161 3568 + 160039680 ACAATATTGATTATATTCTGGGCTTCATCCAATAAGCATTTCTTGTTAACCAAATATCTAGTTTGGATTCACAA-GATAGAGCAGACTCATTTAAGACGCATGAGAGAAGAATCATAAAGATAAGACCATAATTTTAGAAAATTTTTAAAAGACCA---TAATCTGTCATCTTTTGCTTC-TTATTATGCT-TTGTAGAAGAGTGGACAAAACTATTTTTAC----ATAAATTCCTATTCATAATGTGGCTCTGAATGCCCTTGTGATGTTC-TATAACAATTCAGAAAAGTCTGAATGACTACTAGACAAAAACcaagtgaagaacaaacaaatatcaaaaattttaactttttaacaaaattaagtaaccagtaagatagtataggtggttcaaaaagtgatcttaaaagccagaaacatatatgaa-aaaagtatg---atgaaataaaatttataaataacttga----caccatttccag----------acttagatagaagtcaattgactctccatctgacaca-TAAAAACATAACATTACCTGACAATAAACATACTCATCCTCTCTCTAGACATGATATCTCTTAGTTATTTACAACTTGC--CATTATAAACTATAACAAA---------AATCTGGAATTTGTAAATCAGAAACATGCTATAATTAGGAATAGTCAAGAGTATAGTCAATATAGTTATTTTGACTATGTTCTTTAGTACATTGTTATT--CGGCCTTTCTTTTTATCCTAAGTTATCCAAGAGTGATCTTCCTTAGCTATTTAACTGCACAAGTTATTCTGGAGATGCTGAGCTAGAGTACCCAATAGTGAATAACTAAAATAGCTGCCCAAATCCACCCCTTTTTGAAAGGGGCCAACCAGACTGCTAAGTCCAA---CAGGACTTCTCTTTGGAATTTCAGATAAATTGCTGTTGTCACCAGAGTACTCACACTATCAGAGACATGGGTGCCAACCAAGAGAGATAGGTTA----TCTTCTAAGATCTAGAGTATACAAGGGGACTTCTGTTCTTCAA-GGAAAATTCTGCAGCATCTATTGTAGGCCCTCCTTGGTAACCTGTTCCAAA--ATCCAGAAGTTATTTTTCACAATAATTATT-TCTATTATCATGCAAATATATTTTATAAAG--------------------TAGGAAAGTCTGTTTTGCCAG-ATATATATATCCA------CATTTCATAACTCCATGTGAAGTAATCTTAGGATCTTAGGCTTTTGAAGAATTTGTAATATGTCACCTATTTTCTCATTGAGAAATAAACATTTAAAGTTCTATATTTT-TATGCCTACATGAGAATCAACAGTTTTGCCTTCTTTTTAAAACTTTTTTACTT-GCATTAGCAAGATAAAATATGCCTCTTTG---ACATTATTTTCTCAGATATGCTGTTTCTGCATGTTTTAGGGGTAAAGCATTTT-GAATTCCATCAATAGAAAGTTGAAACAATGTCTTAATAATTGCCCAAGTATCAGATGCTGTATTATGTTCA------TTGAGCCTATTATTAGGCTCAGTGTTCTCTGTAAAGACAAGGGAATTGGGTTGGAGAATGCCCAGGG-------------CAGACAATGTAATAA-----GCTTGCCCCTCAACACA---GCATCAGAACATCCCT---------GTGCCTTCCACTTAGCTCCC-------------------------AGATCAGGATGACGCTATGTGTCTTAGTTGATGTA---GCAAGGAAAGTAACTCTAGCTTA-AAAAAATAGGAGAA-----------------ACAGAGT----TTTGTTTGGAATATATTTTAGGGAAATAAT---------AGCTGAACGTAG----------------------AAATTTACTATCATAGACA---GATTTATA--AAGCAGATACTCATAAATGATA------ATAT--------------AATAGTACTTAATTTTAAACTCTGGTCTACACtattaa-------aatatgaatacttaatatttaaaat-----ttatttCATCTG-TGTGTGTGCACACACATGCATGTTTGTGCAT-------------------GTGCTCGTGAATACAC-----ACATACACTTACAAGTATGAGCAGAGGCAAGTACTGTTTTTCCCTTTTG----------------------CCATGTTGGTC--------CCGAGGATGGAATTCAGG--------TGAT----CAAGCTTGTGACATGCTGGTCCATCTCTCTGGGCCTTTGTAAAATTTTGTTTTATAATAAT---TGAG--------GGTTTTTTTAAAGCTAGAACATATCAACCCAAGATT-----ACACAGAGAGTGATGTTGACCACATGAGGAAGATAAAAGGTGGACACTCAATTCTTGGAATCTAGAGAATGCTTCCATTGTTAGTTTTTCCTCATTTG--GATCAACATCTATTCTATAGCTTTTATAAATTATTTGACTTTGTTATGAGGAAATTAACATACAAAGTCCTTTATACTTCAATATGACTTGACACCTTTAATCAAGCCTGACTACATTCCTCTTTTAACAACAAAGAGTGGAGTAACATGGATAACATTGACCCCTAGTGGTAGT---------GAGTGAATGCCTCATGGGCACTCCAAGATAGATGAAAGTGTTGGAATTGGCAAAAAAAAAAAAGGGCAAATAACATGTGGACACAACTTGATGACA----AGTTTTACCAA--TTTTGAAAGTTGATGTTTAATTTCTCCTCTTCCAAATCAAATCCCTTTTCTTGACACTATGCGCACTCTCTATGATGCACCCAACACATCTTCCCAAACTCAA----TGCACTGAATCATAATGGGCTGG--AAGAACAAG--------AGTACCAAGGGTTCTTCAAGTGGACTTCAGCTCAGCAAATGA---TGAGGTGAG---------TGATATCATTAGATGCCAGAAAGAAAGCCCGGAAGCACACCAGACATCACACAACCATGCTGTCAAGCAGAAAC------------TCACT-CTATGAGCT---TCATTCCACATCTACCATGTAGTTTCTCAAGT------CCTCGAAACTAGGATGCCATATAGTTAAGTTCT---GCTACTTCTAATCCTAAGGGAACAAGTTAACAGTATCATATA---TAAAAGCATGACA---------TTTCTCCC--CCATTCT---AAAACAGAAAGAGTTAATCTCAGAGGGCAGCACTCTTCAGATGGGCACATATTTCTGGTGCTCAGTGTAATCTGACTTTACTTGTAATATGTTAAACGTTTAATAGATTCGGTGATGAATCTATTCTGAATCTATTAAACTACTTCAGTGCAATT---ACTCTAATAAAACAATTTACCATCTGGCCTTCTTCGTTCTCATACCTTTGCATCTTTTCCCAAATTGATTACAAAAGAGAGTCATTTTCTGCCGTTCTGGATCCTCCCATCTCC-CACATT-AATGGTTGTGTATTAATACATCTCATGAGCTAATGATACAAAGTGTTTAGCAATGCAAATGATCTTGCTGGTGCAATTGGAGAAAATGGTGTAACTGCCATGAAATTAGCAAGGGGCCTCTAATCACACACCATTAGTAAGAGACAAATGCAGAGTTTTACTCTTA---ATACTTCCTAACATAGGTCTTATGGGTGGGATTCCTGAAATCACTCATGTCTTACTGTATGTCACATTAGTTCATAAATAAATTCCCTTAGATTGCACAATGTGGTTTTAAAATCTATCC----TTGTGCCACAGTGTATGTGTGTTTCTCTTTCCATTATCTTAAGGCAAGAAACACACCCCGCACCCTCTAGAATAAATATTCCTGGGCCAACTTTT--ACCAGAAGATTGCTG--GTGcttgattcatgatactgtcactatgatg
s HiC_scaffold_1 138261568 3786 + 233722169 acaacagtaagTACATTATACTTTTCATCTAATAAATACTCTATG--AACAAAATATTTGGTTTTTAGTCCTAAAGATAGAGAATACTCCTATAAGAAATACCAGGCAAAAGT------------ACTATAA----GGAGGATTTTATTAGGAGTAATCCAATTTGTCATCATTTGCTTCAGTGTACTGCTACTTTTGTAATGTGACTTAGGCAATGTGGACCATCAACAATTCTAACTGAAAAGGAGGCACT-AATGTCTTTGGGATTTTTACATGACagatcttaaaa--taaaataactttaacaCAACAA-----TATCAAataagcacatttcaaaaaatttacGACTCTAATAAAATAAGATATCAGATAAGATGTTATAACTAGTTCAAGGAGATAT-TAAAGAACCAAAAACTTTCTGGCATAAAAGGATGTCTCTAAACAAACATTTATAGATAACTCAGAACTCACTTTTTCCATGGAATTACTTACTTAAAAGGTGATCCGCTGAATGTCCACCAGACCCAATTTGAGTATGTGTTCATTGGAAAGTA-------TTATT----------ACATGTTG-CTAATAGTTACACAAAATTTGGAGTATTATAAAATAGACCAAAGACAGTGAAAAACTAGAGCCAGTAAGATGGAAA-GTATGATAATCTAAAACAAT-----GCATA----ATATAGTTATCCATTGGAGATTCTtagatattttgttgttgttgttgtccttGTTTGTTCTGTGTTATCTAACCATGATCTTCCATTGCTCTTTATGTGCACAGATTATTCTGGAGATACT----CAGACTACT---------GCAATGAGAGCAGCTTCCCAGACTAATCGATGTTTGAGTTGCACTTGTCAGGATGGTAAAGTCAGTTCCTGAATTTTTCTCCAGATTTTCATCTGAGATGCTATTGTTCTGCCAGCATTCA-ACTACCAGAGTCAAGAGCACAGCCCAGG---GACAGCTTACACATCTCATATTGTCTAGACAGTGCAGAGAAATTTTTGTTCCTCGACAGAAAACTATGCATTATCTACAGTATATCCTCCTTTGTTGTCTGATTCAAATTCTCTGGGAGCTATTTTACAAAATAGTTCCTCTCTATTAGCATGCAAATAAATTCTGAGAAAAGATCATCTTTTATTCTGCTTGAAAAAGTTAGATTTGTCACCATTTGTACAGTCATTTTAACTTCCCataatttcaaatgaatttat----gATTCTTTAACTCCTAAA-AACTAGTAAAA--------ACTTTCTTAATAAGTTA-AAATCTTCAATAagctttattttatctattttcatgAGAATTA-TGATTTTACTTTCCTTTGTAAA--TTATTGCTTAGCAATAGTAAGGTTAGAGCAGTCTCTCTGCTTGTTCTGTACTCTCCAATGTCAGGATTC---ACATTT---GGCCATAGCATTCTAGAATTCGATCAATAGCCAGCTGAAAGAATGTCTTTATTATAGCCAAAATGTATCATATTATGTTGCATTCACTTCTCTTGAGACTAATACT----TTAGTGCTATTTTTAAATACCAAAGAATCAGATTGGTCTCTGCAcagagacttttattttttttaagagtagaaaaattggggctggggatttaactcatcggcataagcacctgccttgcaagcaggcggccatgagttcgatccccagtaccgacaaaaaggtaaaaaaaaaaaaaaaaaaagagtagaaaaattaATTGAGGAATAAGAATGGGAAATAGGAATAGCTCCTAAGGGACAGGAAAGGTCTCCAATTGGTTTCCAAAGAGCCCACTTTTCTGAGGacattttatagagcaaaaatcACAAAGTAAGTACAACATAGTTTGAAACTATAATCAACCAAAAAGTTTACAAGTATAACTACTTGGTTAATATTGACCCAACATTAGTAAATGATATGGAGGACATCGTTAACCTGGGTCAATAATCTATGGTCTTAG--TCTTGTCTTTAGTCTTAATTGTAGTAGTCTTAg-acttttgttttaaagtcacaCTGATATCATAAGACATCTATCAATACATCTGACTAATTTTTCATTAAGGATCATTTACCAAATGTCCCAGCTGATACAATGAAGAAATTAGCTTTTAAAT---------TGTAAGAAATATGTTTCTATTTggactataagaaataaaaaattaatcattCTAGACAGAGAAGTTTaaagtgaaaattcagaagaaataatgATGTGACAATTGTCTTAAACTCTAGTTTGTGTCTC----ACTGTTTAAAATACCA----ATAATAATATATGAGCAAAAATTAATACTTAAAAAGATAGGAGCTATCAGCACAAACTTTAGGCACAAGCACAGTAATGTTGACTCTATGTTTAAATTAGATGATTAAC-----------TACATCCAGAAAATTCTTCTGTTATTagcatatctttattttttagtcAATCTTTGGcctatgacttttaaaatatatt-----------------atttaacacA---AGTTCTT-------CAATGTAACTATGTTTATCAGATCAA-----------TTTCTCTTGTTCTAATAAATACTATAATAACTTAGATAACATCAAACTCTAAAGGTGTTATGGGTATGGAGAGAATATTTACTGGAAACTCTAAGAAAGATTTAATTGTCTGAATTAGAcacaaatatacatt----aaaatgttttgaaacaaaTGAGTACCAGCTTAATTTTACCGAAGTCTTTGTAGTT-ACATTGGACTTGTTTAC--CCACATCAAATccttttt-ttgacattatatttatttactatgcTAGATCCAGTGCCCCTCTTTGAAATTGAATCCTGCCCCTCTTTGAAATTAACTGGGCAAAGACAAGTGGCTTGAAGTAAGAGGGATTTTTGTCCT--ACTTATAATTAgtgaataaatttgaaattaaaaaatatcataatACTATCAGCTGAAAAGAAGAAG--CTGAGACCATACCAGACAG---ATAAGGA--CTTTCAAGTAAAAATCCAGCACAAATGTCACTACTATAAGATGTATCATTCCA--TCTGCCATGCAATCTTTCTagtaaacagttttaaaaattgcat--caTGCTGTCAAATTCGTTGGCTGTTGTCAGTCCTGATGGAACAAGCTATTAATCTCATTCAAATTGAAATGATCACAGTGAAACTATCTCTCCTTGCCCTTCTGCCAGTACAGAAAGGGATTAATTTAAAGAACAATACTCTG-AGATGGGCAAATATTTCTCAAAGTAGATGAAatcttactgtaatttt--tattccTAGTGTTC-----------TAGTAAGTAT-TGCTGAATATATAAAACAACCTCACTCTAATTTAGCCTTTGACAAAATATTTCACCATCTGGCCTGGTTCTTTCTAATACCTTCATCAGTTTTCCCAAACTGATAACaaaagagaatcatttgatgaattTTTTGATCTTCCTGTCACCTCACATTTAATGATTCCTTATTAATACATCTCCTGAGCTGATACTACAGAACATGAAGGGATGCAGATGATTTGGTGAGTGCAAGTGGA-AAAATATCATAATTGCCACGAAATGAACAAGGGGCCTCTAATTACAGAC-ATTAATAGGACAAAGACGCACAGTGCTCTGCTTACAAAGGTTTAATGACCTAAGCTTTATGGTGAGGATTTCCAGCATTTCTCATATCATACTGTATGTCATATTCGGCAATTAGTAAATTGATTCAAACTGCACATGGCGGTTATAAAACCCAAACACGTTTGTGCTGAtgtgtgtttcttttgctctttacaTTCTCTTATGACAGGAAATGC-CCCTGAACATCATTCTGCAAGTAACACAGGTCCCAATTTTCCATCAGCACTTTGCTGATGTACTGGTATTAAAGTATTTTTCCTAGGATG

a score=85531
s chr3           151642608 2695 + 160039680 tcctcACAAAATTCCTACAGCataaatttaatttaaaatttttatatttatataaGTTCATGTAATCAGAAAATGACAGAAAAGAGGAGAGAGGCAAGGTAGGAGATAGTTCTAGCTTCACATTAAAATGTTGTCTATGCATTTTCAAGGTATA-GCAGAATGCTAATCATACCGGCCTCCAATGATACAGAAGCCCTAGGGACTGAGATACAGAGTCAGGTAGATTTGCAGGGGAACAGGGTTCCAAAT--CAACAAACAGGCTTTCTAAACTTTGCACAGATCATCATGGCATAGACAATAGCCACAACCTTCTAAAGAGAATAGAAGCAGAGACACATTTCTAACCTACAATATTTTTCTTTATTGTTACAGAAAAA--ATTACAGACT-GATTGTTTTAATTTTtatatatacatatgtgtatatatatatgtatatataGTACTGTTCGTTAACTGAATACAAATAAGCATTCAATTCCATTGTACCATGAGTAAGCATC-AATGACATTAATATTGACTTATTTGTATCACCT----TCTCTAATTAAGGAGCTTGTA-ACAAAGTATTGAGTGGCTTCTTGACAAAACGTGTTTTTTTTCACGTTTGATCTTTGTATAAAAGCCCTGGATCCATGGTCCATCATGTTTTGtatttaaaattgaaatatgattaattaatatgatagttaataattaatatGATAAA--GGATTTTTCCCTCCCATGTTCCCACAAGATGTTTCTCATTGAGTTAAGTACTTCTTTGGGGGGCAGGAGGGCTGAGAATCCATTGATTTCAAAAGAAGATCAGCAAGTATATGAGA-TTTTTAGACCATATTGAAAAATGAAAAATTGGACTCCTCATCACTCTTTCCCAAGAGGAAAAGGCTGTCGTCAGCAGAGCTAAGGGAAA-AAACTACTAATGAAAAA-TACAGAAACCCAGG-AGCAGCAGGTAGAAGGATTAGTCATGGTTGTTCTGAAATACAAAAATTTACCTCCAATATTCTGCCAAAAAACACTGAATGATTTAATACAACATGTTATTTTAAGTTTACAAAATACGGGCTTCTAAAGTTTTTTCCCTTTATGCCCTTGTGTGTTTTTTTTTCGAGTTTCTTACCTGGTTCCAGTTTCCCAAGGTCTTTGTAGGGACTGTGTGTTTTAGAGGCCCATGCCAAGATTTACCCACATGAGTCCTATTGACCTTGGTCAGAGCCACGGGGCAAAATCTCTACTCCTTGCTAT--AAAATGAGGTTGCTATTTGTAGCCGTATTTTCATCTGGTTTTGCTATCCCACATATGAAAATTATTTCTCTGGGAGGATTGATTTACTTCTATTAATTATTATTCAAAAATATACCCTGAGAAACAATTGCAGCCAAA-TACCAAACAAATGAAAACAGATGGTAGCATAATCTAGG--AAGGATTTGGCCCAGGAGGGTAAGAGAAAAATA--TATATAATACAAACAGAATATTCCTTAATTGCCTTCAGAAAGTCAACATGCAAAGCA---GCAATATCTTTTTTTCATATTGCTTCTAGTTTTAAGAATGTTTAGATT--CAAAGTATAGAATATATGAGAATGATCCGGAAGTTAGATAGCAAAAG-TAGACTT--TTTGTTTCCTTGGTCACAGTTTCTAGCTCCCTGTTAACAAGCTGAACTCAAGGAAGAATCTTCTAAGTGAATTGGGGAAACTGTTACACCTGAGTGATCAAGGTGAGTCGAAGAACTGCTTGTCGTCTCAAA-------TTGAATCATTCACT--AAAAGTTTCCCCTGAAGCTAGAACAGACcaatggtagtgtgtcttcacagcatgtcccctggagtcctgggttcaattccagtaccacGTAGTCAGTCGACAATGGTGGATGCTTTTTTAGTCTCATCTGTGTG--TCCTCTGCCACAGAGATTAAGACAACTGGTCTAC---TTCACCTCCTCCCTGAACCAGCACATGTGGAAAGATACAAGAGGTTTATCTAATGACAAGATGTTGCACTGAGTGAGTAGGAGTTTCCTTTGTCCTTATTAAAACCCATCAAAAAGGCCCTGCAA-TGAGGGACTGCTCTGGAAAAGCAGTCCTCCC-CTGTG-----CAAAATAAAGATGTGAGGTCAAGTTCACCCGATTTTAATTATTCTCAAGCATCTCTGCCTGAAAAGTGAAGTTCAAGGTCCCCTGAGGGAAG---GCACTTAACACCCTCCCTGCCCCCAACACAGCACAGATTCCCCTCCACACTTAACAGATCCAGATGGAAACTCAAAACATTTAAAAAAGTGTTAGAATGTAATCAAGCATCAAAGTTAAAGTAAATTTTACAAAAAGCACTCAGGCTAACTAAAATTTCAAACCACTTTTGGCACATTTCTTCCATCTCCTCCATTCATTTTGCCAGAAATCATTGACTTAAAAGGTTATGTGA--GTGTATATATTTTTTCCAATGTATCATTTATAGAGAAAGCACTTATGTAAATAAACCTCTGGGAAAAGGAAGT--TTATAATTAAAACACAAATGTGGGTAT-----ATGGGAAATATTGTTTTTTTGGCTTACTACTGt-ttttaaaagttatttacatatattttaaataaaaattttaCATAC-----------CATAGACTCCCAATTTTCCCC-AGTATTATAAAA------------------TAGCATTATTTCAATTAACTGTTGTATTTTCCAAAGTAAAAAATTATATAAAGTACCTGTCATCTCCTATCTTTACA
s HiC_scaffold_1 138267669 2567 + 233722169 TCCTCAATAAATGCCT-CACTATAAATGACACTTcacatttttgtatgtgtgtggctttatattaatattaa-tgacCAAAATAAAGATACAGACAGGGTAGTAAACCTCTCCAGTTTCACACTGAAAGttcttatttgaattttaaagataGGCTTAGAACACTC------CTTGACTTCTATAA-AGGGGAACATACTAAACAGAGCTACAGTGG-AAACATTCTTGGAGATGGCCCAGGTTTCTAACTACGGCAAA------TGCTCACCCTTGAACAA--------GACATAGGTCCTA--taaattctttataataaaaCACAGTAAGATGTACTATTCATGATTCTGAAAGTGATCTCTCTCATCATAGACAAGGCATTATAGGCCCTTTTGTACTACTTGTTCTCTA-----AGGTTCATATACGTAT-TGAATGATGTTCTATT-----------------TAAGCA--------------------ACTAAACATCCAATAACATTAACATGCACATCTCCTTACTACCTGTTTTGTCTAATCAAGACATTTGTGGACAAGGAGCTAAATAAATTCTTGACGTAATATGTTTTCTG--AATTGTGGTCTTTGTTGAGCAGTTTTGCCTTTATTGTCCAtcatgttttacatttaaatttgaaatatat----------------------attaatacGACAAAATGGATT---CCCCCTCACGTTCCTACAAGCTGTCTCTCATTTAGTTAAATACATTC----------GGGGAGCTGAGACTCCATTGATTCCAAAGTGAGATCAGCAAGCAGATGAGAATTTTTAGaccatattgaaaaataaaaaattggactCCTCATCACACTTCCCCAAGCAGAGAAGGCTGTAGTCAGCAGAGCCAAGGGAAAGAAAATACCAGTGAAAAAATATAGAAACCCAGGGAGCAGCAGGTAGAAGAATTAGTCATGGTTGCTCTGGAGTATAAAATTTTACCTCCAGTATACTGCCAAAAATT-CTGAATGATTTAATACACTATGTTATCCTAGCTTTACAAAATATGAGTTTCTgagctttcttcctttaatgcCCCTGTGTTTTCTTGACTCT-TTTTTTAACCTGGTTCCAGTTTCCTTTGATAGTTTTAGGGATAGCAT-TTTTAGAGCACAGTGCCAAAACTTGCCCACATGAGTCCTATTGACCT-GATCAAGGCCACAAGGCAAAATCCCTGTTCCTTAACTTTGAAAATTAACTTGATATTTGCAGACATACTATCATCTGGTTTTGCTATTCCACATATGAGAATTATTTCTCTGAAAGGTTTGATTTACTTCTATTAattattattcaaaaatataCCCTCTGAAACAATTGTATCCAAAAtactaaacaaatgaaaacagatgGTAGTGTAATCTAGGGGAAGCATTTGACTCagggggttaaaaaaaaagaaaggatataatATAGGGAAAACTTTCTTTAATTACCCTCAGAAAGTTAACATGAAAAGTGATTGAAATAAGTTTTACTGCTATTGCTCT--GTTTTATAAACATTTAgatttacaaaataaagcatCTATAAAAACAAGGCAGaccataaacagaaaaaaacagaattagtTTGATCCTTTGGTTATAACATTTGGGTCTCTAGTAACAAGCTAAACCAAAGAAAGGATTTATCAAATGATGTGGGAAAA-TATGGCATCCGAATTATAAAAGTGAAT-----------ttgtaaattaagaaaaagatttgaataactcatttaaaaagtttc----------------------tgttag-----------------------------------------------CCACAAAG-AAGTTTACGAC------TATTGTCCTAGTACTATCTGGGTAGACGCCCCACCACTAAGATCGAAAAGACTGGTCAGTATGGTCAGCTCTTTCAGGAAT----GCATCTAGAAAGTGAAAAACAGTTTGTC-ACTGACAAGACCTTTCACCATGCATAGAGGAGATTCTTTTGTTCTCATTAACATCCACTAAAAAGGC--TGAAAGTGGTGGGCTATTC-AGAAAAGCACACCTACAGCTGTAGTTTATGAGGTAAAGAGTGAAGGTCAAGTTCACCAGATTTGACTCTCTCACAACCATCTCCACCTGCAAAGTTAAGTCCAGGACCCCAGGAGGCAACAACGTACTTAACACC-TCCCAAATCCCTTTTCAGCACAGTTTTCTCTCTGTGCTTA-CAGCACCAGATGGGACCT---------TGAAAAAGTGTTGCAATGCAATCAagcatcaaaattaaaatgaattttatgaacagCACTAAGGCTAACTAGATTTCAAAACCACTTTTGGCACATTTCTTTGGTCTCCTCCATTCATTTTGCCAGCAGTCGTTGATTTAAAAGGTTATGtgaatgtgtatattttttttctaatgtaaCATTTACAGAGAAAGCACTTATGTAAATAAACCTTT-GGAAAATGAGGTTATTATGAGTAAAGCACAAATGTGGGCATATGCCATGGAAAatactgttctttttctttaatactttatttgaaaagttatttaaataaattccaaGCAAAAATTGTACACACACATTTAATATTATAGACGCTCAATTTCCCCCTAGTGTTATATAAAAAGGATGTGAGTACATTTAGCATGA----AAATATCTATCACTTTTTCTGGGGC-AAAGATCATAGGGAGCATACATTCTCTCATATCTTtgta

a score=31344
s chr3           151651049 1229 + 160039680 ATTATATATTCCATTTTTTTCCTCAAAGTTCTCAGAAGTTCTTGGCACACAGATATATATTCATCAATTTATCCCAAATTCTGCAGTTTAGGATATAGTCTATTTTTAAGATTTTTAAAAAAGATTTCTGAAAGAAGTCTCC-AGTTCATCTTTGAGATCCAAgtttggagactggtttgggtcaagtttggagactggtttgggtcaagtttggagactggtttgagtcaagtttggagactggtttgAGTATCTTTTAAGCTGGAGTGACAGA--TGGATCACTGAGACATAGATGAAAGAGGAACAGCAAGCCTGGGAGAGAGGCTCCATCTGACCT-----------CATTCACGCCCCACTCTTGCAAATAACCCAGCTGTGTTGGTTTTC---------CTGTTTGTTTCCCCAGTGAAATACAACTT------------GGTTCTTCTCCGAGATTTTCTCCAATTGCCTAGATACAGCTCAGAATGTGGACAATGTCATAGGTGGGCATGAAGATTTCAAAAGAGGCGTTTCCTTCTGTTGGGCACACAAAATGTTTGGAATGAGGTTATGATAAAAAGTATGCTTATTCCCATTGCGTGACATATTTTGATGTATTCCTAATGTATTCCTTTTCAAAGCAGATCATCTCCAAAGTGGAGGCAGAGGCAGAATGAGCAACAGTTGGTGTTGGACGCACACCGAGTTCCCATTTTTAAATCTCCTCAAAATGCAGCAGAGCAATCTAAAAGAGCAAGTGGCAGGGTTGCTTTTTTAAAGACTACGTATTCTCAGTAGCTACTCTTACTAGACTCGAAATATGCAAATTACACAACACGCAAATTTGGCTACAGCTAGCTTCC----AAACTGGCTAATATGAAAATATTAAATGCATCTGTTTATTCATTAAATGTAGTATTCTCAGT----AGTCAACACTTCTTTAGAAATTGTTCGGCAGCTTTGTATTCAACATCAAGACATATTTAAAATGGTTAAAGAGCCTCAAATATACTATCTTCTACCCATAGCTATGTCTGAATAGTATTTGTCCTTTAAAGTATACACAGTGCCTTTCCAAGCAACATTCTGCTAATCAACAATGGTTTTATTAATTCT--GGCATATTTTTA---TGTTTTA-GCCTTGGCCCTGACTTTCCATAAGTACCTTAGAAATAACCAAGTAAGTGTGAATCTGCCTTGTCATTTTAGGTCAAACAATTTTATATACTGTGGTTATATACTGAGAGGGACTATTCTTTTTTT
s HiC_scaffold_1 138279997 1107 + 233722169 ATAAAATACTTCACCTTTTTGTCAAATTTTCT---GATTCTTTGGCACCCAGTCTTATGTTTATTGATTAATCTCaaattactaaatttaaaatat--tttaatttgaagacTTGTCAAA----CTTGCAAAGGAAGTCTCCCAAATCATCTTTGAAATCCAGATTT--------------------------------TCTGTGTTCA------------------------------------------TGTCTTACCTGCTAAAGTGACATTCTTGAATTCTTGTGACatagagaaaagatgaaaa-------taggACAAAAGTCtaaagtgatcttcctgccaaTTCAGCCACGTGCCAATCTCACAGGTAGTTCAAGTGTATTTATTTTCAACCAAAACCCTCCCATTTTTCCAACATGATATAACTTTTTCACTAAAATGGTCTTATTCTCTGATCTAAGCAAATTGCCTGAATGGAACTGTGGAAGTGACCACAGTGATAGGCG------AAGGTTCAGTGAAAGCTATTTTATTCTGCAGAGTAGATAAAATGCTTGGAATGAGGTCTTTTGAAAAAGTA-ACTTATTTC-ATTGCACTATGCATTTTGATGGATTTGTAATGTAT-CCTTTTCCCAACATCTCTTCTGTGGAGGAGACACAAAGACAGAATGAGCAGCAGCCGTTGTTTTACACACACCAAGTACCCATTTTTAAAGCTCTTCAAAATGCAGCAGGGCAATTTAAAAGAGCAAGCAGCatgattgcttttttaaaaaa-atgtattctcCATAGCTACATTTACCAGactcaaaagatgcaaattataCAATATATGATTTTGGCTAcagctattttctttcaaaactggctaatac--aaacattaaattcatctattcatttattaaatgcaAATATCTTAATATAGAgtcaaaatttcttttgaaaatattcaacAGGATTGCATTTAACATCAAGATACATTTATGGTGTTGAAAAGATTCCA-----------TTC----------------------------------------------------------AATAATATTCTTTGAATCAACTATAGTTCCATTAATTATTGGacacatttttcctttattttaggtCTTTTCCTTGATTTTCTGTGAGTACCTTAGAAATATCCAGGTAAATTTGAATTTTCCTTGTCTACTAaactcaaattattttatttgtttgaattgAAAAATGAAGGAGGATGCGGTTTTGTT

a score=40748
s chr3           151652862 2532 + 160039680 ACTGGTAAACCATGGTTTATATTCAACAAGAGAATCTGGAGTGATTTT-----AAATCATTAAGCTCAGAAAAAAATCAGCTATATGTGGTAATTTCTTTTCTAAAGGAGTTTTG-TTTTTATGTTCACACACATATGACTTCTCAATTAGCTTTCGCCCCATGACCATTCACAAAGAGGTTCACT-GTGTGTGCCTTTGTCATTTTACCATGCTCCTCTGACCCACTGCTGCTCAAGTACATGGCCTTCTACC-------AATATTTAAGTCTGAAT-------AGTATTTGTTTTTCAAAGTGTGCAGTACCCTTCTGCTCACTGACACTCGGG-CACACCTTTCCCCATCATGTGTTCT----------------CTCTGTGGCCTTTTTAGCCCAATGA-GAAATCATT--TTAGAGGATGAGTTTCAAGCATTTGTCCATTTGACTCAAAACTCATGGATTTTTAGCACTTAACATAGGAGGAAC-AAGACTCAATATCTAAAAAAATATAAAACAAGGAAATGGAATGTCTAGTTTAAAAGCCCAGAGAGAAAACAAGGG----GCAGCATGAGTTTAAAAAATGGAAAAGGCAGAGCAGTAAGAAGTGA-AGAAAACCCCAGAGATGAGTCATAGCAACGAGAAGGACACATCGTCATCTGCACAGTATATAGATTCCTTTTTATATACCAAAAATACTAGGCCCTTTGATATCTTCCCAAAACATGAGAATCCAAAATTGAGTCTTCCTCCTGAATTCAGCCATTAGCATTTCATGAGCTTCTGCACACCCTCCGAGGATCTTCCCTCAGGAACGTTAGTTATAGAGACACTTGGCATTTTTTCACAGCATGCACGAGTCACAACACAGACATCTCTGCCCTCAAAATAAATGGATATTGAACTCTGAATAAAACATGTCCCTTTCATCTTCATCCTGTCCTCTTTCTTAGTATGCTGCTCTGTAGCCTGCAGCACTCTTC--ATCCCAGGTTAAAAAGGGATGGACCAAGGAGCTACCTTGAGAAGCAACAGTTTACTAATGGGAAACAGTT-------ACATGCT---TGCTAC-CCGAATTCTTTCCAGGACCCCAGCTC---TCTTATAAACTACACTT----------------CCTGGGTT----------------------TGATCATATAATTGGGGTTTTTTTCCTAAAATAAAATTGTTTTTATTTCATTAAACAAATGTGCCAGTTAGAAAGGCTTATTTCTAAAAGAAAATATGGAAATGTCTTAGTCAAGTGTAGATATGCTCCATTTGGACTGCTAAGAGGCTATTATCACAGTTTTATACACACCAGAATTCT-TGC----TCTTACACAAAGATCACTCTAGCAGATTGGTATGATGGGCAGTTTGTCTCATTTTCTAAGTCAGAAGGGGTCAACCGCCAAAGAACACAGAAAGTCACTGGCACAGCTGCAGTGAGATGTGGA-TCTCCTAATATTTTACTCAGGGATAATTATGTATATACCTACATAGGGTTGTTAATTAAGCACTTGTTATAAGTCAGATGCTTCTCACTGCCTTCTGATGCCCTCTGTCCTGTGACCAGC-TAAATACAAA--------TAAAT-TATTGATGAGCAACCACCAAGTACTACACAGAAACACTGAAGT---TTACTATCATGTTACACTACATCAATAGAAACTGAAGCTTCCCTTGTTACTGAATTATTTGCTCAACCATCTCTCATTATTATTGGCTCCATTTGCCAACATAATGAATTCCATTTTAATTTTACTAAACTCTCAGCTTCACAGATA-CAGAGACACCCCATATTTAAAGTCATCATTTTAGCTCCTATCAACATGCCTAGAAAGAGTAGCCATT---GAGATACATCCCAAGAGTTTGAGCCACTAGTGTCTCTCTGACACTTGTTCACCATATTCC-AATGAATAAATTGCACTTCAAAATGATGCTCTGCACTGTTTGAAAGGAGGCAAAGGTTGTCAGTCCCATTCTCACAGGCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCCCCCTCACAGCCATCTCTCAGTCTCCCTCACAGCCATCTCTCAGTCCCCATCACAGGCATTTCTCTTTCCCTGTTACAGGAATCCCTCAGCATCTCATTTGGCTTTTGCACTGATCTCTTGCTGCCTTCTGTGAGGCTAAATCTTAAATGACCAAAGCATTAATTGTATAAGAATATTTATATTGTATTTAATCCCATG--TTTTTAATGGACTCAAGATGGATGGAATAATGGATACTTTATATAGAAGTCAGAATTTCACATACAAGCTGAGAATAGATACAAAAGAATacacacacacacacacacacacacacacacacaGTCCATGAGATCATATCTCTTCATTAACCTGA---------------GTACACCT----------------TTGGAAATCTATACTGCT---AATCTAATATTAAATACCATATTTTTAAAATGGAAAGAATATTT
s HiC_scaffold_1 138281236 2344 + 233722169 ACTAGCTAATCAACATctcttttcaagaaaaaaagtctGA-TAATTCTTACAAAAACTAatcaacatacaaataaataatctctgG--------TTATTTTCTACGAGGCTTTTGATTTTTATCCTCATGCAAGACTGACTTCTTGGTAATCTTTCACTTTGGAGACCTCCACATTGGAATTCCCCAGTGTTTGCCTTTATCAATTTACAGGATTAATGTGATCCACTGGTATTGAACTGAACTGTCATGTATCTCTTGTAAGCATTCAGTCCTTAGCTAAGCCCAATATTTGCTCTTTAAACTTCATAAAAATGTCCTTC-CATTCACATTCGGGATATATTGTTC---ATCATACCTTCTATGGCAAGGACAATGTCTTTGTGATCTTTTCAGTACTGTGAAGAAATAATTCATTAAAGGATGGATATGAAGTATTGTT--ATGAGGCTTAAAATTTATGGTTTTTCAGCGCTCCCCATAAAAAGAGCTCACACgcaatttttt--------ttaagtaatgGAATGGAATGTT--GTCTAAGGGCTTAGAGGGACAATAAAGGAGCAGTGGAAAgacaagaacaaatggagaagccaaagaaataagaaagaacagaaaacctCAGCAATGCAGTGTAGTACAGTGAAGAgtttatcattacttgcagaatATAGag-----tttttttaaaccaaaa-tattaaattctttgaTGTATTTGAAAAACATGAGATTCTAAAATTGATTTTCTCTCTGGAACACAACAATTAGCATTACATGAGCTTCTGCCCGCTCTT-GATGAATTTTCCTCACTCACATTAGCTGTTGGGACACTTGGTATTTTTTCACAGGATGCCTGAGTCACAACACAGACATCTCTA-CCTCAAAATAAATGGATGCTGAACTTTGAATAAAACATGCTTATTTCATCTCCATCGCGACCTCTTTTTTAATCTGTTGCTCCAATGTCTTCATTTCCTTATGAATTCCAGGATGAAAAAGAATGTACCCACGATTTATC-TGGGAAGCATCTGTCCATGAATGGGAAACTATTGGGAAAGAGATGCCACATAATACACTGAGGTCTTTCT-GGACCTTAAATCACTTCTTAAAGGCTGCACTTATCTGAAATACTAATGTCTGAGTTTTCACAGTGTATCTTTGTCTGGTGGTAATATAatcaaa-----ttttctaaaataaattattttctttttcttgaaatatatg---CAATCA-AAAagcatatttctaaaataaaattaggaaatattCTAGTCAAATAAGAATGTATTCCATTTAGGTTTTT-------TATTATCTC---TTAAAATACAGC----TTCTGTGTGAAATCTTACACAGAATACACTATA--AGAAGGTTAGAATGAGTATTTTGTGCCATTTTTTAAG-----ATTAATAAACTATTAAGCCACATACACAGTCACGAGCTGAATTGCTGTTAGAACTAGAGTCTACTGATCTCTTCTCTGGGTCTATTTATTTGTTCATCCA----------TCAGT--ATCACTGATTATCAGACAGATATTGTCCTGGACCCTAGGTACACCACTGTATTGTTTTTTACTTAACTGCAAAGCTATGCGTGAATATATTAATGAGCAATCCATGAATACCGCACatgtaaattgaaataaattactAACA-GTCAAAATAATTCCAATGAGCCTGAAACTGTCAATGGCATTGACTCATTTTCACTATCA----GTAGTGTTACTGGCTTGATTTATCAAtataatgaatttcattttaattgtacTAAGCTGTAAATTTCCCaaatagaaaaaacattcctTTTTTC---TCACTGTTCTA-CTTCTAGTTAAGTACCTATCCATAATAGgcatgtaagaaataaaccttgcaA----GAAATGCCTTTGTAAGTCTGACACTTGTTCACTGTATTCCAAATTAATCAGCCTCTTTTCAAGCTGACACCCAGCAC----------------AAAGTTGCT----------------GCAAGCTTTAG-----CTGAAATTCTTCTTT---TCTCCC---CAGCACACTGTCGG--------------GTCTTTCAGATTCT------GCCACTCCTCAGGCACCCATACTG---------AGT----------ACCATGCTTC-------------------------------------------------------------------------------------------------------CAGAGCTTTTTCCT------------------------------------------------------------------AGGCTAAATCATAAATGAGAGTAGCATTTATTGAACAGGAGTATTTATATTGCATTTTATTCTGTGACTATTGAACAGTCCCAACGTCAATGAAGTAA-----ATTTCACCTAGAAGCCAGAA-TTCACACAGAAGCTgagaataaaagtcaaaaagaacACTGGACTCCATCCAATCaattaaaatcacaatttatAAGATATTATCTCTTGATTAATCTGACATTGGTTCTTAGTCGAACACTTGTATAGGCAAAATTACTTGGAAATCAAAACTACCCTAGTTCTAAAATTAAatgctgtcttttaaaaat--aagggatatct

a score=71410
s chr3           151662857 5021 + 160039680 [encoded data, 5276 characters]
s HiC_scaffold_1 138285052 4486 + 233722169 [encoded data, 5276 characters]

a score=17470
s chr3           151667882 770 + 160039680 AGAAACTAATATATTAAAATGGTGGAGAAACTGATCATTTTATGCTGAGGTAACTTAAAAAAAAAAAAAGAAAAGCTCACAGAAGAGGGCGA-CTGAAGTA-ACCCACAAAG--GATTA---TCATTGGAGCAAAACTTCAGATGCCTTTCCGGTTTTCATAGAGGGAAGTGGGAGTGGAACTTAGAGTGTCTGAATTATAAAAGAGATACAAAATTCATCTATCGGAAGATTCTAGGGAAT--------AGTTTCCTGGCTTTAGACTAATAGACAATGTTCTACCTTGAATATCAAGGGGTCAAAAAGAGTTTAAGCTtgtgtgcgtgcatgtgcgtgtgcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACACACATATGTGTATGCACGTGCTTCATGTAATAGGTCACT----CTTCAAACTCACACTGCTTCCTTAGCCAATGACTAAACATCACAATGTCTTCCT--TTTCTGAAGAAAGACACAAAAACTCTTTCCTG--GCTATTTCCTCATCATCTCT--------ATGTGACACACCA--TGAAAACACTGGCAGTGCCTCTGGTTTGACTGCTTTTTGGATGTGCTTTAGAATAGAAGTTTCTCACCCTGAACAATAACTGTAGTTCGCTTTATACAACTCC-------TGTAACCAGCCTGCCTTTGC-GTATCATGAAAGACCCTTACC------------TCAGTCTCACTGGGTGTCTTTTCTATTGTTGAGGTTTGAGTGTATCTCCTAGGAACTTAAAATGGGATCAAGTTTGCACTCAAGAAAACAAACAC
s HiC_scaffold_1 138290970 761 + 233722169 AAAAACTAGTAAGTTTAACTGATAGATAAATAGATCATTTTATACTCAAATGGCT-------------AAAGCACCTCCCAGAGGAGGCAGAATTGAAATGGAGTCAAAATGCAGACTAGACTCATTTTAACAGAACTTtagctacttttttgttttttatacaaaaaaagttgaaaaatgctTCAAATATCAGCATTATAGGAGAGAAGCCAAAT-CATCTGTGGAAAGTTCTTAAAGAACTTTCATTCAGTTTTCTGAATGAAAGCTAATGAGCAATATTCTATCTTGAATATAAAAGGCTAAAGA-------------------------------------------GCACATGAGtcttcatgtgtgtgtgtgtctgtgtacacaTCCTTGTTCATAAATTTGC---ATGAATTAGATCACTTACCCTTCAAAAACACACTCTTTTCTAAGTCACTGGATAAACATCTTAATGGTTTCCCACTGTCTGAAGCacagcagaaaaagaatttcGTGAAGTTATTTTTCAGCCACCTCTCCACAGACAGTTGATACACCCATTAAAAACGCAAGCAGTCTGTCTGGTTTGGTTACTTTTTTGATGTGCTTTCTAATAGCTACTGCTTGCCTTTGGCAATAATTGTAATTCAATTTATGCATCTCCAAAATCATCCAATCCTACTTCCTATGCAGTATCACAAAATAACTTTTCTCTTTAGAGTTAATCAGCCTTACATTGTGTGTTTTCCATTGCCTAGATTTTTCCACATCTCCACATCGCTTGCAAGCTGAACAAG--TGCATTCAAGAAAGTAAACAC

a score=13003
s chr3           151679975 508 + 160039680 agTTCCTCAAAGATGCTGAAATTGTCATAGTAGACCTTCACCAGAGGAGCTAAGCAGTTGGCAGTGCAGGAGGCATTACTGATGATATTTAGTGAGT-TCCCTACTTCTCATGATTTAGATCTATCACAAACATGGGAGCATCCACAGAAGTAGCAGAGA----GGACCCTTTTTATCCATTCTTCAAGTGGGGTCCTTCT-TCTCTGTTGTAGTGAAAATACCTGTATATTCCACAACATACTTGCCACCAGCATCACCCTATTTGATGTTGGCAGATCTCTTGCTCATAGAAGGTAAAGACAGTCTTCCCAATGGTAACAGTTCT--TGTTCTCAATCTTGACTATGCTGTGCAACTTCCTGTAGACCTGGTCACACTGAAAAAGGTTGACTGTACAGGTTAGGTAAATAAAAGGACCCCTTATGGCAAAAATAGCTAATTTGTCACATTTGAAGGTAGTCCTGAGAAACAGGTGCCCAGTACGGGTCAATCCAAATCTATTCAGTCCAACCTT
s HiC_scaffold_1  97937336 493 + 233722169 AGTCCCTCTACAACCCCAAAGATTTTGTGGATGACTTTGGCCAGGAGGGTTAGGCAGTTGGTGGTATGAGAAGCATTGCTGATGATCCTGAGATAGCAGTCATACTTCTGGTAGTTCAGGCCCATCACAAGTAACAG-GTATCACCAGAAGGGACAGAGATGCTGAGCTTTTTAGTTTCATCCTTCAAGTGACCCCCAGCTGTCTCCATGGTAATGAAGACACCTATAGATTATACAGCATGTTAAATACCAGT-TCACCCATTTTGATGCTGATAAATCT--TACTCCTGGA-------------CTTTCTACTGGTTATAAGTCTCCTGTTCTCAGCTTTGACTGTATTGCTAAATTTGCTGTGGGTAGAATCATGCTGCAACACATTCACAGTATAACTGAAGTCAATGAAGGGGTAATTGATGACAACAATATCTACTTTGCCTGTCCTGAAAGCAGACTGGATAGCCAAGCACCCAATATGG------CAACATCTATTTGGTCTCATCTT

a score=110232
s chr3           151692017 3267 + 160039680 CCTCTTTCCTTGGTGAGGT------TTCTCATCAGATCTGCCTGGACAGGTGAAGAC---TGCTAACC--AGTCAGAAGATTCACTCAAACCATCAGCAGGTAGGAAAAGATGA---ACAAGCTGACTAGTTCCAGCAATTACATCCAGTGTTTCCTAGTCACCTCTTCCTTGGTATTGAATTGTATGTAACAGACCCGATACAGGGTCAATAAGGACCTTTTAAAGATATTTTGAAACTTCCGGGGCAGATTGATCT--CGTGTGTACTAGCAAAATAACCGCAATACTCTTGAATGTAATGGATGTAATGGATAACGCCTAGAGTTTCAGTTCATACTTACAGGGTCATTGGGACTGAGTTCAGCTTTCTTCACATGCAATATGTGTCTCATAAGGAACAAAGCCGAGAACAAAAAT-AGAGA-TAACTGCAGAATCCAGTGGTGTGAACTTAATCCAAATAGAAGAGCTGATGCTCCCCTCTC--ACCAAATAAACA-CCAGACAGCTACAGATTTGTATTGAAAGGATGAATCG-GTCATTCCGTTTAGATTATTTCAGCATTAAGGGATATGGCTTGTTCGTGCCGCAGATGATCCAGCCATGTGGTCAGGGTAATGCTAAAACTGACAAATGATATGCCAGACTCGAGACTATATGGGCTGTTTTAATTAGAAGTTTATAGAACTCTGAAAAATCTCCAAAGGATTTATTCCTATGAATGAATTTAAAACAAATTTAGAGATAATTTATTAGCTAATATACAGAAGGTCGTTTCATGGCAGCAGGTGGTTTGTAATAATCTCCACAGTAGTTTGCCT---AAGCTGGCTATGGAAGCCAACTCCAGTTCCCTACAGGAGATTATTCATCCTCAACAAAGAACAATCAGGACTGTGCCTCCTTTTGTCAGAGGACATGACATGCGATCAAGTTGAAATCTGCTTCTGCCTGACAAACATTTGACTCTAACAGTACAAACTATTTTTAGATCTGTTTATCTTCTCCCACCATTAATTTATAATCATTTCACTGTCTTCACAGATCTGTCAGT---------------GAAGATTGCAGGAGAAAAAGAGGCACTGTCCAAGGAGAAAGCAGGGAGACAGG--GCCCGAAGACATTGATT-TTGGTAATACATGCGAAAGCAAACTTTCTCCCCCCACCCCCCCGGAAGCATCTT-CGAAGTTGCTCTTGGATGTCAAACCAGT---ACTGTGGAGTCACACTCTAGCTCTAAAGGGGTTAGCATAGATGCGGTGAATTATTTTTAAAATATGCTCTAACGGAATGATAAGACCAATGC-GTGCACA-TAAAGCCTAATGCATTATGTACAGTCT-TCCTTAATAAATGCACTACTCATAAAATATACATCCACAAGTCCTCCTTTCTTATCAGTACAGCAATCAAGCTGAGAATAAGATTATCTAGAAACTCATCTCCCTCCTGTA--------TAATCACATTATCCTCCTTTTAAGTCATGCTCAGATGAAAAG----GGGGAATGGCTTGTTCACTGTCTCATTATATAAAG-ATTTCATATTTACTCTCCTTACAATTCTCCACTC-ATCTTTGTCTCTTCTGTTTCCTGGGATAGGGGAAAGG-------------TTCC---CTAACCCATGAAGTAATATTCAAGAATAATACACA----TCAGTAGTT-----TGTTTAGGTTTACCCTTAAGCATTTGAGAACTCTCTATGTTACAAAGATGGTAGTTTGATTGCTAGCAGATGTATATAAAGCTAGTTCCTGATCTCT-GACAGATTTGACTCTCTATTTG----CTTTGCTATTCATCCCCACTCATCAGACTCAGCACCTTGTAGCCAGTGTACGGCATGCTCTCCCTCACAACCACAGCTCTCTGGCACCGATTGCCCAAAGCATTTCTTAAGCTGAAATCGAAACTTTGTCTTCAGGAGGAAGGTTAGGACTGGATAACCATGTTGTAATTCCTTCTAGTCTACTCTTTTTCATTTGCTAACATGACCTCTTCTTTACTTCTGTGTATTTCTTACCTTG---TACTTTTTAAGCCCCACT-----------TAATTACCAGGTAGTATGAGCCATGGTTTGTTCATTCTTATATACATGGCAGGCATATTCTATGGATTTCTTG--ATGCTGACTGCTCTCTCGCAGAGTGAAAATGATGGTTTATTATGGAAGCAAGGGAAAC-------------------------AGCCTACCCCACCCCAAGTGCAGTATTTTGTGATTGCTTGCTGCCTACCAGCTGACACTGCAGCTCTCTTCAGGACCTGTTAAGGCATCTTTGTATACTTTGCTTAAAAAAGAAAAAAAAAGTCACTTGAGAAGGCAAGTACCAATTTACATGAGACAAGA-CTTCGTGTATCTCCCCACATTCCTTTTTCACTCTGACAAGTGAGACACCACAGGTCTCCTTTTCCGATTTTTATTACAAACTGTGATCCTGCTCGTTTTGAAGGAAGGCTCATTAGTGCCATTG-CTTACAGCACTCCACAGTTCTGTAT-AAGAAAGACA-GATTGCCTGATGCCTTAGTACACCAACCATAATGAACCGCACGTGCATCCTCCCACAGGGCTTGGAGTTCAGATCTTCATTTGC-TTTGTGAAAAAT-GAGAATGAAGAACATGGGCA-TGGAAAATATGGTTGGTTCCTTG-TTTCCCAGTTACAGGACAGCTCCTCCAGTGCATATGTGATGTAACGGGAGAGTATAAAGAGAAACAGTTTGTTCTCATGCAACGC--TGCAGCTTGACTGCTAATCCAAGACAGTAACCAC-CACAGAGGGTCATCAGCCAATGC-CAAGAGCAAACTTATCAAA--GCCA---CACACAGGGTGAAGCACGCCTGCCTTGCAGGACAGTATCCAAGGCATTTCTTTTCATTCTCAAGTCATCAGGTTCCCTTTCGTAACAAGT----------CACCATTTTCCAGACCATATACTGCTAAAAATTATGAGTTAAATGAATTCTTCCCCAACTAATAGAAGTCATAAAAATAAGCCTTAAACAATAAAACAATTGTAATAACTAAGACTTGGAGAGAG--AAGGTAAAATTGTTGTAGT------AGATACAGATC-----------TTGAAATAAATGTTTTTTC--CTCCACTTAGA-ATGAATGTGTTTGTATTTCTGTCTTCAGATTCTTTAATGGCAGAAGACTGGATGAGTTAGAAGACATGCTGA-CCTCACACCCTA---------CTCCCTCTAGTCTACCATCTACTCTATGAGTG-----------ATTTTTGACC-AATTGGGCTACAGTCTTTACCTAATACACACAGTAGTCATTTAAAAGTTTTTTTAAAAAGTCAGAAT-------------TTTCTAGAACTAACTGAGCATTAGGGA-CATTTATATAAAATGGCTTTTTTTTA
s HiC_scaffold_1 138298279 3401 + 233722169 CCTCTCTCAGTGGTGACATGCGCTCTACTGATCAAATCTTCCTATGCACAAGAAGACCTTTGCCAACCTCAGGCAGAATTTTCACTAAAG------GACAGTAGAGAATAATCAGAGATAAAGTGACTCAATCTGGCGATCAAATTCAATGTTTGTCAGACGTCTTCTTCTCAGCATTGAATTGTATATAGCAGATATTGCATTGGGGTAAT--TGACATTTTAAGG-CATTATGAAACCTTTGGGTCAGATTTGTCAGAAAAGTGTAATTCTAAAATAACCTTAATATAGCTTGATTCAGTGGATA-----GTTGATGCTGGGAGTTTCAActcatatttataatataattggGATTGATTTCAACTTTCTTCAGATGCAATATACTTCTCATAAATAGcaaagccaggaaaaaaaattagggaCTCTTTGCACTTTCTAGTTATGTGAACTTAATCCACACAGAAGCCCTAATACTCTTCTCTATAACGTGATAAACCTCCAAACAGCTATGAATTTTTATTGGGAGGCTGAATCATATTATTCCATTTAGATTATTTCAGCATTAAGGGATATGGTTTATTCACGCTGCAGATGATCAAGCCGTGTGGTCAGGTTAATACTAAAACTGACAAATGCTATGCCAGACTTGAGAATATATGGGAAATTTTAATTAGAAGTTTATAAAACTCTGaaaaagctccaaaaggtttATCCTTATGAATGAACTTAAAACAAATTTAGAGCTAATATATTAGCTAATATGCAGACAGTGACTAAGGGAAAACAGATGCCTGGTGATAATTTCCACAATGGTCTTTTTTTAAGGCTGGTTGTGGAAAGCAACTCCAGTTGGCTGCAAGAGATT----GTACTCAACAAAACATAATCAGGAGTGTACTTCTCTTCATCAGCGAACTCAACATGCTATTAAGCTTGATGCTACTTTTGTCTGAAAGACATTT-----TAACTCCACAAACTATTTTTAGATCTGTTTAT-TTCTCCCACTATTAATTCATAATCATTTCACTTTCCTCATAGATCTGTCAGTGAACTTGACTGACTAGAAGATTACAGAAGAACAAGAAGCATTGttcaaagagaaag-agggagagggggagaccAGAGACACTGGTTACTGATTCTGCACACTGGAGCAACCTTTATC------CTCCTTTGAATGCATCTTACAAAGATACTGGGAGGTGCTAAGCCACTGTGACCATGGAGTATCACTCCAGCTATAAAGGggt------------agtaaatt-ttttaaaaataggttctaaaataaagataaatccaGTGCAATTCACATTAACACCTAATGTACTTTGGACAGTCTGTGCTTAATGAAtgcattattcataaaatatacattCAC-AGTCCTCCTTTCTCATCAATAAAGCAATCAAGCTGAGCATAAGATTATCCAGTATTTCAACTCCTCCCGATACCAAGATTTAATCACATTATCCTCTATTTAAATCACACTCagatgaaaagaaacaagagatgaCTAGCttagtattttattgtataaagtATTTCGTATTTAGCCTTCTAATAATACTGCACTCAATCTTCATCTTTCATGTTTCCCATCATAGAAGAGAAAAACATAGCAGCTTTTCCCTTCTAACCCAGGAGCTAATCTTAAAGTATAATATATATACTTCAGTAATTGAGACTGGTTAGAGTTACCCTGAGGCATTCAGAGACTTTTTGTTCTACAAAGATGATATTTTGATTAGCAGTAAATGGACATAATGCTGGCTCCTGAGATCTAAAAAAATTTGAtcctgtgtttgtttcttttaatattcttctcCATTTGTCAGATTGAACAATTCATACCCACTGTAGGACATGTAAGACATCTAAATCACATTCTTCCCGCATAGTTTGCCCAGAGTATTTCTTAAACTAAGATCAAAACTCCGCCTTCAGAATGAGAATTA-AATTGGGTCCCAGCAATGTGGTTCACTCTCatcaactattttttatttagacaaATGACCTCTTA---ACTTTTCTGTGTCCCCTACCTCGGTATTTTTTTCAGGCTTCCTTCTATTGATAAATAATTATCAGGTTAAATTAGGTATA----ATTCACTCCAGTGTACA--GTGGACATATTCTACAGAATGCTTGCAATGGTGA--GAGCATTCGCATAGTAAAAATTATGGTTTATTTGGGAGACAGAGGAGActttaaaaggacaaaaatacaaCAGGAGCCT-CCACTTCCTCTGTCTGGtcttttaggattattt-ttgtGTACTAGCAGACTATACAGCTCTCTCCAGTACCTGTTAAAGCACCTGTGCATACTTTGCcagcaaaag----aaaaagtcatttggAAAAGCAAGCACCAATTTACATGAGGCAAGGCCTTTGTGTGTGT-CTCGCATTCCTTTCTCATTCTGACAGGCAAGAAACCGCAGGTTTCATTTTCCAGTCCTTATTA-AAAATGTGATCCTGGTTGTTT----GGAAGCCTCATTAGTGCCATTGCCTTGTGATGGACCACAGATCtttataaaaaaagatgtgtttacATGGAGGCCTTGAACACCAGCCATAATGAAAGCCAAGTGCATCCT-CCATACGCCGCAGAATTTAGATCTACATTTGCTTTTGTgaaaaatggagattcaagaccAGGAGCATTTGAAAACACAGCTAGCTTCCTGTTTTCTCAGTAGCAGAGGAGCTTTACTGTTGCATGTGTAACTCTGAGGACAAGTGTGGGAAGAAGCAGTTAA---CCATGTAATACTTTGCAGCCAGCGTGTTGAGACAAGACAGCCATCATGCTAGGAATGGCATCAGCAATTACACAGGAGTAAACTTAGCAGCTTGCCAGCTCGTCAGTGCTGAAGTGCTGCTCTTTTGCATG--AGTGTCCAAGGCATTTAATTTAATTCTCCAGTCTTTAGTTTCCCCTTCCAAAAAGATAGTCCAATGGTGTCTTTTTCTAGGTCACCAACTGCCAAAACTTTTGAGT---ATCAGTTTGATGTTAA-----AGAAGTTCTAGAAAT-ATCATTAAATGATAAAAC-GTAGTAATATTTCAGATTTGGGGAGATACAAAGTGAACTTACTGCTATCCAGCAAGACCAAGCtcctttagatttttttaaaaatgtgtctttcCATCTCTAAtgagatatgtgtgtgtgtgtttctcagtATTAGAGTCTTTAAATAGAGAGTGACTCCATGGGATGGAAAACGAGCTGGTCCTCCCATCCTAAGACTATTTTACCTTGGAGTCCACCACTTACTCCTGTGGTGAACCAGATGAAACATTTAACCTCGCTGGGCCATGCGTTTTACCTACCACATGGagctgtcatttaaaaataaagatgaaaa-ccaaaacacaagGCAATGGGTTTCCAGAATTAATTGGACCTCAGAGACCATCTATAccaacttctttcttttca

a score=33461
s chr3           151696981 2812 + 160039680 TTCCTGTTTTCACCATTTCTAATGT-------TCCAGTGACCAGAAGTGGTCtcaagctgaactggctaatgtctcatggttaatatgttatagagacaagat---------tcaaactcGATTTCATTAAACATTTGCCTTTGCAAAAAGAAAATGACTTGCTTTCCTT---------------CTGCAAAATTCTGAGATGTTTGTGCTTGTTAACAGCTTGCTTGTTT--------GAGAAAATGTTTTCTTGGATTTGCTCCTAGGCAGGAGGCTAAGTGAAGGGTAGACTTCTTTGAAAACCCATTGAGTTTCAGCAATTGCAACTTTATATCTTAGATATAGGCTAAGATGTAGTTAGGCAGCTACAG--ATAAAGCAAATGTCTTCAGAG------TCTGCATATTTTATGTATTTCATCTCCTGGTCCT---AGCAAAGTCTCACCAAAGCTTGCATGGTGACATT--GTGAGCTTCTAATTACAA--------------------------------------------------------------------------------------CTCTCGTGAAAGCTTGAAATCAGCCAAAGACAAAAGACTGGACA-TGGCCACTCC---------------CTTCTCATTT---------ACCACTCCATC-----------------------CTGTCTGTTTCCCTGTCTCCTCT----------------GCACTCTGGAGTGCAG---AGTCTTTGATGCAGTGACTTTCAGAGAGGCTACCTCCTCTACTATACCTAGAGTTGCACACAGTAAAGGTGAGGATC------------------------------------TCCTAGCTAAAACAC-----------TCCACAGAAAAAGCTAATATGGTGGGCAAGTATAAAG------AGAAGAGATGGTATTCTTGTAAAGTTTAATACCTGTACCATT-ATGTTGACACCTTAAAGTTTACTAAGCAAGACTAAATATCTGTGAATTGAAGCATCTTTTTGTACATCTGGCGAAGCCTTGGGAAATATTCACCGCTCATTAGCAATTTTAAATTTACAAATGAAACAAGAATTATATTTGAAAAGGATGCAGCATTTTCCCCAAGGTAACTCCAGCTGCATGGATATCTGTATTTCCTAACCATGCTAAATCGACAGTCCCAGGGGGGGTGCAGCTCATTAAATGATTAAATATATCCACATTTCCACATCTGCACGAGAGCCTAGCCCAGGGGAGCCACTGTGCAAACTAAATGAGATGATGTG-AAGTTGCCAAAAGCCCTGAGAAGTCTCCATTGTGAGCACTGACAGAGTCTTCCATAAGCAATGCAAACTTCCCCAGTCCCAGCCACTCTCTCACTGCCCTGCAATCTCTTTCTTGTAAAACTGCTGCTAAATTAGGATAATATGGTGAGATATCAACTATTTTGTTATttggttggttggttggttggttggttggttggttggttggttTTTTTGGGttgttttgttttgttttgtttGGAAATTATAAAAGAAAGCTAACAAATTCAAATTTTTGATATACAGTCAGGAATCCCACAGGTTTGGTAAATCTGGAAGGAATGATAGAAATATGTAAAATATTATGGTACAGACGAAATGAGGCAGAGAAGGTGATGATAGGTAATGAGAAGGATGAGCGCTGGGCACAAACATGAGAAGTAAGAAAGGAAAGAGACCAGGGGAGGCCAGGGGCGGGGGGGGGGGGTTCTGTGGAATCGGCAGGGTCAGGGAGATGGAGAGAGTCAGGGAACTCACTCAAGCATTCTTTGCTCAAAAATACCATGGTTCTATATGACACTCTGTATGCTAATTTGATTTAATTCAAATTAAAAAATAAAGTAGCTTTATCTTAGAAAAGGACATGGTTATGAAAAACTTTAAATAGTATAGAGACACACTGGTGTTTCCTTCCTCTCTACAGCAC---TTAATAAAGATTATCCATCCTTGAGAGAATG--GAACTGAAGAAGTCTGGGT-----TGAGTAGCACAGGAGGCTTGTGCCCAAACCTCAGGCTTCAGAGTCCCTGCGAAGGCATGGCTTAAAGCCAAGGAGAACTATAGGATCTATTGGTAGAAAGGCATGTGCTGTGTTGTCCTTCTGGGGCTATAGAGAGTGGCTTAGAGAAGTGGATAAAGCAACTGCATAAACATGTGGGGAAGAAAGCCCGAGGCTTCCTCACAGAGTTCCAGTGTGTCCCAACACAGTAGTGATATTTGCCAAAAAAAAATCTGTTTGCTTTTCATTTCTCCTGTACTGTATGGGTTTGCAAAAGTAAGCTGTTCCAACCAAAAGAGCCCCAGAATTGGGATGGGAGCGTTTATCTGCAGGCTAACATTACACACTTGATTCTGAGATTATTCACATGCagggctgccctcacccaaggcctaacaggtggtttgaatatctcagcagaggccagaacttggcaggttcttgta----tcatctaacaacacagcatgggtcgttgtcctaggatacagaaacgtgaccaaagggaagaataaggaaagaaaacatcttagtttccatgttgtttaaacttgagatggaaaagaaacagctctgagtgtttactgaatttacctgcagaagagaaaagtaagcatgctttattttcctttcagaaaagccaagtgtgaattcagaaagaaaatttagatcaattacaatgaaacaagttatatatttttcacaaatgaatttata--ctgtaaaattttatgtctgctaTTCTGCAGTTGAGTTGAGTTCAGTTGAGCTCTTTTGTTGAGACATTACATATAAT----TAAACAAAGTAAAATCAGAGCTTTTACTTCAGATTCCTTGCATGTATTTGCCATTTTTAACTCCAATGACACTGCCTTCAATGCTTTATCCAGTCCATAGATATTACTGAAAGAACTGGCCAGATTTTTCAAAAGAAATAGGAACATCAAATCGGTGACAGAATGGTTTTCCAAGGTCTTTATTT-AATTTGAATTTGACACCCTGTTTTTTATTTA
s HiC_scaffold_1 138302705 2632 + 233722169 ttcttatttttactattttagaaATGAGTATGCCAAGCTATAGGAACTGGTCATACTGTTAATGGACTAAGGTCACATGATTAACATACTATGAGGATATGAAAATAGGATATTAAAGTAGGTTCTCATAAACACCAGCATTTGTTAAAAGGACAGGCCTCCCTTTCGCTGAAATCCTGATGAGCTTGCACCCTACTGTGATTTATGCACCTCTGACAAATTTGTCTGTTTACTGCTCTGACAGACTGTTAGTTT----TTGTAGCTATGCATGAGGCTGAATCCAGGATGGACTT--TAGGGTGATCATTATTAGCCTGTATTCAGACTCCTATCTCATGAGTGTTGACTAGAGTGAAGTCAGGCTACTAAAGGCAGAAACCAAAAGAATCCAGCAAAACCCTCTCTCCAGTCTCTGTATTTTATCACCTGGATCTCAAAGTAGAGTCTCACAAAATCCTTTCTAATAAAGCTCCTTTAGTTTTTGATTATAGTGcactctgtctctttgtctctctctctctctgtctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctgagcctCTGAACAAGTCAAAGGGGCAAGCTTGGGTAGTAGACACACTACCTTGTaattaattcttttcattttactgtttcacctctctctctctctctctctctctctctctctctctctctctctctttctcctctctcactctctcctttttctctctgttctacCTTTTGGGCTTTTATGAAGCTTGTTTCTTAAAGGCTGCCTTCTCTTCTGCATTTTGACTCATGCAAAATGAAGCTTAGGATCCCTGGACTGGCATATCAACGGACCAGCAGCTCCAAATCCAAGCTAAAACTCAACTGGGATAACCCATTGTATAAGCAAATATGCTGGG-AAGCCCAAAGTAGAGAAGGAAAGATGGTATT-TTGTGAACTTAAATGGCTGCGCCCTTTGTGTTGATTCCTTGAAGCTTTCTGAGGGAGGCTGAGTATCCATGAATAGCAGCATCTTTCTGTACATCTGGCAAAGCCTCAAGAAATATCCACTGCTATTTAGCAATttcaaatttacaaataaaatgagaattatgtTAGAAAAGG-TGCAGCA-TTTCCCCAAGGTAGCTCCAGCTGCATGCATATCTGTGTTTCCTAACCATGTTAAAACAGCGGTCCCA--GGAGACACAACTtgttaaatgataaaatatatccGTA-CTCCGTGTCTGCAAATGAGCCCAGCCCCAGAGCGCCCCTGTAAGAATGAAATGAGATGATGTGAAAATAGTTGAAAACACCAGTATCTCACAATGATGAAC-------TATTTTTTTGTGATTgaagtatgattt---------------------------------ttttcctctcttcaaaCTGCT----AAGATGGGTGAAGTGGTGAGACA-----------------TGGTTA---GATCCGGTGATTCGATGAGATCTTAATTGGC--------Atggttttctcttccttcctttg----------------------------------------------------tcCCA----------------------------------------------------------AAGTGAGGAGTA----GTGTTGA-----AAAAAAAAGGTCATGTGCTTGGCTTAA-----------------------------------------------------------------------AGGGTC----------AAAAAGTCAAG------------------------------TCCCCTGG------------------------------------TAAAACCACGAAGCAAGG----------ttagaa-----------------atattcaaaataatgtaCGGAGATACT----TTTTCTCCTGCCTCAAAGCCCAGTTTATTAAAAGTCGTTCAGGCTTGGGAGACAGGAGAGCCGAAGCAGGAAGGGCCTTAATGACTGGCCCAGGAGGACTGGTCCTTGCCTTCTAGCCTTA-AGTCCCTCAGAACGATGGACCTAAATCTGAGCAAG------------------AGAGAAGGCTGCACCTTGCTACACCCCTGGGGGT-CAGGGGACAGCATGGCACAGTGAGGAAGACAGCTGCATAGAAATATCCAGGACAAAAGCCGGAGC--CCCTGGGGAGGCCCAGAATG-CCCAACAGAATACTGTGAACTTCC--ACAGCTTCCTGTTTGCTCCTTATTTCTCCTCTGCATCCCAGGTTTGCAGAAATGAACTGCACCAAGCTAAAGATCCTCAAAGCAGGA--GGGAGAATCGATC--CTGACTTGTATTGTACCCTGGGTTCCAGAACCAAACCTATGCAAGGAAGATGCCCCCCAAGACTCCGCGCGTGGCTTGACTGCCTCAGTAGATCCCAGGACAGGACAGGCTCCTCCAATACTGACCTAGGGGCAC----CAGGTCATTGTCCCAGTTCTGAGAATTATgatcaaagagaaggaaaaagagagcaaACAGCTGAATTTCCC-----CTTAAACTTGAAGTGAAAAAAATAC--CTTGGAAT-TTGACTAAA---------AAGAGTAAGAGGGAAAAATGCATT-TCTTACCATCAGGAAAAGTGATTCTAGCTTAAGATAG-AGTCTAAGGctcattacagtaaaaaaaaaattat-ttttgtacaaATGAGTCTCTATTCTATGAATATTGACATCTGCTATACTAC--------TGTGTCTAATAAAGC-----------AAAATTATGTAAAATGAGCTAGAAATATTTCCCTCAGAGATTCTGCTTCAGA----ATGCGTTTATTTT---GTCTGGATTCCAAGAGCACTGGCTCCAATGCTTTACCTAGACCATAAATTTCATCAGATCAATCAATGAGATgttcagaaaggaaaagaaatcttcAAGCCATGGTGAGGATGCTTTCCACAGTATTTACTTAAAGACCACTTTgataactatttttttaatta

a score=18931
s chr3           151707256 1589 + 160039680 TGAAGAAAATTGAG--GAAAGGAGGGATGGAAGAGG--AATAATGTGGGAAACAGAATGAAGAATGGGAACCAGAAAACAATAGCAAGAAACAG---CTCTCTTGACCCTAGCAATGCATGGAACATTTGATACTT----------AGGAATACTTGAAGGTGGACTAAAATCACAGCTGTAGCTCAGGGTGTTGGGATCACAGAAACCAAGAGCATGAGCTTAAGACAGAAAAGACACAAAAATGGGAAGCTGCCAAATTGTTCGCTTTTTTTCCCCC-------CACCAAGCCTCTGGGTCTATCCTGACTTATTAATGCCATCTACTGGTC-TTTCAATTACTTGTTTTCCCAAAATCCATTCTCATTGTTTGATCTGGACAATTTCCCAGTGATTAGAGAACAAATATTGAGGACATTTTCACCCAAGTATTCGGTGTCTTTCTAAAATTATATTCTCTCGAGGG---CGTGGCT-------TGCTACACATCCCAGACTGTTCCAGTAGTCAGACTCTACAAAAATTAATTTCTTCTTT-GAAGTACTCTTATTGTAGAGAAAGAGATTGTGGTTGCCAAGAGA---AAGAAAGCAGAATTGTAGAATTCTCGTGAAAAGCAATGTGGGGGTGGGGAGTCC-----------CTTCTCTGGAA---TTGGAAACAACTTCCGGTGGTGGTCCTTCATCTGGAAATTTGTGTGTGACTTCAACCTGTTGATTT----GCCTTTTGGTTA-TCTAGGCTTTGCAAAAACTAGGAAATGTTTTTCCTGAACTCTGACACTCAAATTCCATGTGGGTTttttgttttgttttgtt-ttgttttTTTAATAACCATTGGCTCTC-TTTTTAATCTCCTCATTTGTCAGGGTATTCTCTGGCTTGATTCATCAAGAATAATAAATGTCAGAATTTTTAATGTCATCCCA--GATACCTATTTAATTCCTGACAATCTACTAGAACATGTGCAGAAATCCAGCCTGGTCTTACAACTACACATAAGCAGGC-TCACTCATTAGTAAGTGTAAAGTTTCAACAGCAATCCTG-----TCTCATTGCAGTCCCCTCTTGACAAGACATTGAGTGATAGTAATTTGTTATTCACACAGGACTAGGATCCATCACTTTCAAGGAGAAAAATCAAGCAATTT---TGAGCAAAAATAGCTGAGCATA--CACA-----GGGAAGCTATCATGTGGGGTGGGGGGGGGTTGTGTGCAagagagagggagagagagggaggaggagggagaggggagacaagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagaTGCAACTATCAAGCAGTTGAGGCTAATTCCAGGCATAGCCTGTCTCCAGATATTTCCACCAAACCTTACTTTGAAAAAAAATCTATCAA------GTCTCCCGAGAGCCATCAATATCAATGCAGATGTGATGCTATaag---------------ttatagctactagtcaaatccaccctcccatattgtttttgtacagtctaccagtatagagtgatttttacatttt----------taaattgtgaaaa-aaTATTATTT----------------------------------------------------CATGAACATTC--ATTTATTTGATTTT-TGTCTGGCCATGTGCAGACTATAATAGCACATCTAATTAGTCACAGCAGAGAC
s HiC_scaffold_1 138311379 1579 + 233722169 TGAAGAAGAGTGGACAGAAAGAAGAGATGGAAGAGGGCAGCGGGAAGAAAAACAGATatggaagcagaggcagaaaaaCAATGCTAAAAATAAGACTCTCTCCTGACCGCTTCATTTCAGTGAGTGTTTGCTTCTTGCACTCATGGAGTACTGCTTCAGCTCAGACTAAATTCAC---TGTAACTCAGGGCTCTGGGCTCA-GGAAGCAAAGAGCACAGGC-----ACAGACAGGGTAGAAGTCCAGGGAGCTTATaaattgttcttcttttttttttctttttttcactgagCCT--GAATTTACCGTGACTTATTCATGCCATCTACTGGCCCTTTCAATTACTTGTCTTTCCAAAACTGGCTCTTGCTGTTTGACTTATACAATTTTACAATTATGTAGGAGCAAATAGTT------TTCTCTCTTGTTTACTCAGTTTTTTTCTAAAGAGATCTTCCTTGGAGCAACCTGTGGTCCTCACACTGGTACAC-TCCAAGTTTCTCTTTGTTAGTGAAATCTGCCGAG-----TTTCTTTGTTAGAAACACCcgt-ttgaggaaaaagagaatataGTTTCTGATAGATGTAACAAAACCACTTTG-AAATTTGCTATAAACAGCTGCCCCGATTTTAGTCTTCCAAAGCTCAAAACCTGCCTTGAGGTCTTTGAAATATCTTTCTGT----------ctacctaaaattcatttggaacattttccaaatgaattaaAAGCATTTTCATAAATCTATTATTAGCTCAGGCACAGA-------CTtctaagcttttaaa---aaaattaatataagttCCTGCACTTACTACTTTATTGTCATTT------CTgctgatttttacttttgaattctTTGTTTATCAGAACATGCTCTGGTTTGAGTCACCAAGAGGCAAGAGtatcaatatttttaatgttattgcaCTGGGGCAAACTTAA---CTGATGATTCCTCTGAATGCAGACAAGATTCCAATCTGGTCCTGTACCTACTCTTAAGCAGAAATCATTCTTTagcaaataaaacatttcaataatGACCTAAGAAGTTCTTTCTACATCACCTTCTTGAAAGAACATTGAGTAATACTGAATTGTTTCTCATTCACATTTCGAATCAATTGCTCTGAAGGCGAAAAACAAAGCAAGttatttccaaagaaaaagctgagaaaaaccacaaaactgagaggctttcttctttcttgatg------------------------------------------------------------------------------------------------------------------------aTGAGACTATTAAGCAGCTGAGGTTAATTCCAGAAACAGATTGTCTCCAAATATTTCTGCAAAAATCCCATCTGACCACAATACTTAAAATTCTCGGTCTCTAGAGACCTCTGAATGGCAGGAATGAGTTGGAGCCCTAAGGCTGGGGTCAGGAGACTACAGTCAGGGCTCACTTATA-CATCCTAAACTGTGTTTGTACAGATTGTGAGTAAAGAATACTTGTTATATTTTAAgtgaagaaaaaattgaaaaaaggatATTATCTGATAGTATATGAAATGTAAAGATCAGCCTCTAATAATAAAGCTTCACTAGGACACAGACATGCCTATTTGTTTATTCTCATCTCTGACTGCTTTCATACTGCAGTAACAGAGCTGAGTAGTTACAACAGAAAC

a score=37209
s chr3           151712404 1508 + 160039680 TTTTTTTTGTCTTTGGT------------TTAGATTACTTTGATGTATCATATAAATTAATGAAGGAAAATCAAGCGGAATGTGTGGGTTATAATTAGACCCCAGGAGTTGCTAGTCTTATAATACTGTGTATTATTCTAAATTTCTGCAATGTATTCCTAGTAACTGGTATTGAGGGACAGCAGCATTAATAAATGTTGTGCAGGGAACATGGCAGAGTTAATATATTATAGGTTTACAAGTTATTGTGGTTCTGAACACAGCTAATTTATTTTGTGAGTGATAGAAAACAAAAGGAGAAGCATGGAATTAAGAGCTGATCAGAGCCATCTAGCCACCAACCTGGCTATCATCACCACCCATGAAGCTCTACAAGCCAGGACCAAGGCCACTCCCCTAGGCAGTCCTGA-CCGAACC---CCCTCTCTTCTTGGTCCT-----TCATTTTCCTGCCT-------------------CTTCCCTCTCTTCCAC-------GTCACATCACCAGTTTTGAGC---CTGTTGCTGCTTGGTCACGTAAGCTGAAACTGAA----------GAAGGGCAAGTCTTGGTTCTCTGGACA--CATCTCTGACATTTGAGCCAACACATCGTGAGCTGAGACCAACTACCTGTATTTGTTACAGTTAGTCATTTTAAATGAGATATGAAAGCAAAATCAACATGATTAAATTTTATCACCTGCTTGGGT----CTTGACTAT-----------GAAATTATGGAGAGAAAACTAAAAGTTTAAACCAAAG----AGAAATCTAGTTCAGAATTTACCGGCTGCTGTGTAGGTTTTAAA--TGTTTATCCTACCACTAGATTACCAACAATACTTTGAAAATCAAATTGAAGTCCTTGGTGCCT-ACAAGTTGTAAACCTCACATTTGAGACTTACACTCTACAAAGCTTTAACTGTACCTCCGATATTTGTAGATATTAATTTTGAGGTTC---ACTTTATAGTACTACAGAACTTCAGACCAAGAAAATAGTTTAGATTAATTTCCTAAAGTTCAAGCTCTTTATTTTGCAAATAACATTGAGGAACCTAAATCTTACAGAAACAAAGAAAC-TAACTTCTGA-----GGCCCTTTAAACAATAAAGCAAAATTTCGAATCCAGGCTCCCAGAATCCTGTGATAATGCTACATCAATTGGGACAGTGGAATCTGGGAGGGAGGAGTGCCCTACATGGTAGAAAATCTTATGAATAATAAGTGTGA--GGTGGAAGGGATTGATTTTGTTAAATACAAACAGAAGTCCGTTCTTGTGCATTACCAGTGGTCTGATTTTTCAAGATAAGCATTTTCCATGCTTATGAAACGCAAAGGAAATTCAGCCCAGATGAGCAATGAGCATTGTATAAATGAAGCAGGACTGGAGGAAAAAAAAAACAAAATTAGAATAGTAAATG-GTAAGTCTGGGAACCT-GGAACTGAGATGCTCAAGTTTAACTGAGGCCATGAAGTAACTGCTGG-TACTAGATACAGATTGCGATCATGGAAAGGTAGGCAGAGGCCTAGGTTCTGGCATACAAGTCCTTGGCATGGCTATAAAGCAGTCAG
s HiC_scaffold_1 138318809 1519 + 233722169 TTTTCCTTGTCTTTGATGTTAGTGGGATATTTGATTACCCATAGGTGCCATATAAATTAAGTAAtgacaactgagaagaatgtatggaTTGCAATAAACCCCTGTGAG--GCTTGTTTTATAACcttgtatattattttaaatttctgcaaTGCATTC---ATAACtatcattaaagaaaaacaa---taataaatgttCTATAGggaaaataataatgttaatatGCTGTAGGCTTATGACTTATACTGGCTTTTGCTGCAGCTGAATCTTTTTGTGACTAAtagcaaa--aaggagaaaacatgaAATTAGCAGCTAAATAGAGCCCCCTAGCCATCAACCTG------ATTAACAGTGAGGAAGCTCCCCAGACTAAGA----------TTCTCAGTGCAGTCCTGTTCCCAGCCTATCCATCTTTCCTCTGTCctcttatttatctttcttcctgtgcATGTGCTCTGTTATTCTCCCTTCGTCCCCACTGCCCAAGTCTCCATGCCAGCTGGGACCTTGCTGGTGCTGTTTGATCACATAAATTTAAACTGGACTGAAGAAATGAAATGGtattcttgcttttctttacaTACAGTCTTGTCTTTTAAGTCCACAAATAACAAGGTGGGGTCATTTACACATATTGGGTGCTGTCAGTAGTTTTGAAT----TATGAAGGTAGAATAAATAGGACTGG-TTTTATATCTTACTTTGATTCTACTTGGCCATAAATTGTGATAGAACTTGTAAATGGAAAACTAGAAGTCGAGATAAAAGTCACAGGAAGACAGCTTGTAACTTACACACTgccaatgactttttaaaagtatttcttccACCATCAACTCAtcaaagatattttcaaaatcacGTTATAACACTTACAACTTCATGAGATAGAAATATTATGTTAGAAACTTATactttacagaattttaaaagtctatcccttatttgaaaatatttatatctagTTTTTGAGATTTGGAGCACT---GAATTTCACATCTGGAAAATA----------AGTTTATAAAGTCTAAGCATCTaattttacaaatac-----aaaaatctAATTCTTACAGAAAAAAACTAACGTAACTTCTAATCACAGGGCCACTTATCAATAGAGCAAATTATTAAATCCAGGCTTCCAGAATCCTATGCTAATGCTCCTC------------TGGAGTCT-----GGAAAAATGCCTTGCATA------------ATGAATAGTAATCATGAAGGATGGAAGGGatcaattttcttaaatataaacgGAAGGCCATTCTTATAATCGACCATTTACATGA-TTTTCAGGATAAGCATATTTT-TCCGTacagaatgcaaagaaaatacaGCCCAGATGAgtgctaaacatttttaaaacaaaatattcctCGAG-----AGGAAGCAAAACTGGAACACTACAGGAATGAGTCTCATAAGCTCAGAGACtagatttgcatttttta--aagactACAAAGTTATTTCAAGTTTCTAGAAAGATATCATGATTGCCAAACAACCGACAGAAACCCATGTGCTGACGGGCATGCTCATGGCACTGCTATGATGCAACTAG

a score=12771
s chr3           151715611 1174 + 160039680 ttctatttttctgaagaaccttgaTACAGGTTCTCCCATTTCAAGAAGTTTACACTTAGCATGGTATAACTGAAAAGAATCCATCACAAACCTTTAT-----------TCATTGGCAGGAAACAAGGGTATATTCTCATTTTTATAGCAATTTGTTTTAGTAACCAATTTGCAAACTACTGGTTTCTATGGAATAATTCTAAATTAACTATAAATTAAAACTTAGGTACCATGACAGTTGAAGCATAATTTTTCTCCTGTTTCATAATGACTTTTC--AAATTATGCTCATGTATA-GTTGGCTTCAAAACTTCATTAT----CCAGATTTTGTAACTGGGAAATCACATTTATAAAAAACACGAGA----------------CATGAGCCCTACCAAATGGTATACATTATATATGCATTCTTCATGAAATCTTCAGGTTGATAGACACCTGCTAAATTTTAAGATACATTAATGTTAACTAAAGTAGCGGTGTGTGAAAAT---------TAAGGCTTTTTTTGCAGCA--GAAAAACTAAATATTAAACAGGAGAAGGTGTTTTCCAGCACTGTCACATGATCAGCACCAATAGCAAATATTCTTCCCTTTAAATAATTCACATATTAAATAACATAATGGCTTTAAATGTTTTTTCAAGAGCTACAAACTCAAAAGATTTTTTTAACAAATATTTTAGCTTAATAAAATCTAATCACACACCCCTTTCCCTTTACTCTCTCCTGCTCCACCTACGTCCTCCCTCAGATGCCCCCTTACCCCTGCCACCTGTCCTCTCACTTTGATGGTTCCTTTTACTCTCTCATAGTTACATACAAGTTTATTCAAACCTCCAAAGTCACTCTTCCTCATCTCTCCACATTGCAGAACATTAGCCACTAGAGGGCAGATGTGACCAAGACATTTAATACATTTCTCAGAAC--CCTTTAAATTTTAACCTGTGTG--AAGTAGTGCCTTTTGCACTCCTA-AGTATATTTTTGCTAAAATATCATGC-CAAATAAAAAGCCCTGATTCTTATTTGA--TG-ATTCAGATTTTAGTCTTTCTTTTCTAGAAGCTATCAAGTGTTATCTGTGTTCTCAATTA-GAATCAGATTAAATTTACATTAAAATGACATAGCACA-TGTGAGTTTGTTATCCCACAAAATTGGCAGTAGCTCTTAGCACCTTGGTCTGTATTTTTGAGGGCATGTATTGATA
s HiC_scaffold_1 138324990 1048 + 233722169 TTCTTTCTCACTGGAGCATTCTGGTGTTGACAGTTCCAT---AAGAGGGGTGGACCTAATACTGTGTAGCTCAAAGGAATTCATCGTAAATGCCCATGAATAACATGTCTATAGTTAGGGCATAGAGGTATGTTTTCAC------AGCAACGCACTATAATGACCACTCTGCAAACTCTTTGTTTCTGCAGAATACTACTAAATGAGCTCCatcctaaaaatgaaagaaaatagcattTGAAGCACAGTGTTT-TCTTGCTTCATG-TAACTTTTTTTGAATGACATTCACATATTTAGTGGCTTCAAAAGTCCAGCATGCATCCAAAAGTTTTTACCTGGGAATCACATTTATAAAAGGCAAAAGTATTCAGTTTATGTATTTGTTGGTCAGAATAAGCAATGAGTATTGTGAGTTTATATTT---ATACTCTTCAGATCTatgaaca--taataaaat--agaatacattAATGTCAACCCAAA---------GTGAAAACACACACCAATAATAAGTTTGATACAACCCcggaaacaagaaaatgaaacac-agaacacACTTCCCAATACTTTCCCATATTCAACACAAAGAACAAGC-----TTCCATTAACTATGGCGTGTATTTTATAACACGATA----------TATTTTTAAGTGCT--------------TCTGTTTGACGTGTTTTT-------GTAAAAGTTA---------------------------------------------------TAGAAGCC------------------------------TGA-------------------gcagtt---------tttaattaaatttcaaaatcccCTCTTCAT--GTTCTCCAGTCTAGAGGGCACTGACCACTAGAGGGCACATGTGACCAAGATATTTAATAAGATTTTGATTGCTGCTTCCAAATTTGAGTCTATTTGGAAAACAGTACATTCCTTAAGCCAGcggtatattttctttaaaattatatatgcaaGACAAAAATACTG--TAGTATTTCAACTGCATTCAACTTTCAGACTCATTTTCTTATGAGGTACCAAG-----TCTAAGTTTTCagttacaaagaaaattatattcgCAGTAAAAAGACACAGTACGTTGACAGTTTCTTGTTATACAGAGTTGAGAACATTTGTCCCCCCCCCATTTTGTGCCCCTTCATGCAGACACTGATA

a score=6042
s chr3           151732008 355 + 160039680 CAGATATATTTGGTCCTAGGGAGGGTATGGATCCTATAAGATCATATCTAATGAGAGTCAGTATTGATCCAACACAGTTCTAGGTCTCAAGCAAAGCATTCCAGTTTAAAAGAAATGGACAAAGGATA---------------------------------------TAAATCATTTCATAAT-TTTCTTTTTTAAAACAAG---------AGTGAAGTTATACGGATCTTCCAAG----ACTGATTTGAGGAAGATATCAGGAAGGAAATAAACAGAGGAAAATACATTCAACCAGTGGGTTAAAGGTCAGGGCTACTCACATG-----------CCAACAGGCTAAAGAAACAGACCTAGCAGGTAATCAACAGACCCAGACAAGAATTGGCCAAGTTGATGATACCGTCAAGCTCC
s HiC_scaffold_1 138332377 408 + 233722169 CAGAAGCATAGAGTTCTAAGGAAGAGACAAAGAATCAAACTTCACATCTCCTAAGAAGCCCTGCTGATCCAACCCAGTTCTAGATTTCAAGCAAAGAAGCACATTCTGAGAGTAGAGG-CCAAGGATACAGTGTGGGATTTTTCAGCAGTGATGATGACGTCAAGGGCAGGTCACTTCAAAACATTTGGTCcttaagaaaaggaaaggaaaagagaactaTTGTGTGTCTTCCAAGTTATACTCagt--gggaagaggaaaggagggaaacgTAAAGGGAGAAAGACATTCAGCAAA-GGGATACAGGACAGTACTAATCACACAGGCAGTGACCTCCAAAGAGATGAAGAA-------TTCCAGGTGTGCAATAGATCTAGGCCAGGAGTAGTCAAGCAGCTGACAACTGCAGCCTTC

a score=15308
s chr3           151739128 382 + 160039680 tattgagggaaattgagtttaagtcacatgtgcatgatcatgcagctgttgagagctcaccgagatgtaaccatggtaatgatccaaaA-AGACTCCCACTTGCAAGCACGATAGTCCTTCATCTTACCCCCCAAAAATTTGCTGATAAGTCCAGTCAGTTACCTTCAGTAGCAAAATGAAATAACACTCACCATGTTTTATCAAGTCTCTTCGAATTTTCTTGATCTTTGCCACCAGCTCAGAAGAGTGCATTTCAAAAGAATTGATATCAAACACAAAAACCACACAGTGAATTCTGTCCTTCAGCAGTGGGTCATGGGTATAGTTCGGATGGTTTGATGTGATTGGTTTCATGGAATCGAACTATAAAATATATAAGAAG
s HiC_scaffold_1 138333896 378 + 233722169 taGTAAGTTGAATTCAGTTTAAATCACTTGCATA-GGTCATACTACTATCCGGAGCTCAACTGAATTTAACCATGGTGGTAATCCAGGACAGATTCAAACTT-CAGTTACCTAAGTCCTTCACGCTATCCAAAAACATCCTACAATAAAGTCTAGTCAATTCCCCTTAGTAGCAAAGTGAGATGAAACTCACCATGTTTCGTCA-TCATCTTCAAATTCCCCTGACCTTTGTCAGCACCTCATTAGAGT-CATTT-AACATAGTTGACATCAAGCACAAACACCACACAATGGATTGTGTCCTTCAACAATGGAGAATGAATATAACTTTGATGGCTTCATGCTATTGGTTTCATGGAATTAAACTGTAATTTATACATGAAG

a score=21992
s chr3           151745139 969 + 160039680 GGAAACTTCTGAAATTAATAACCCCACAAAAGCTCTCACTTT---CCCAAGTTTC-TGTCTTCAGATTTCCTGCTG----GTAAAAATGAACTTAGAGATATAATTCATACAGATGGATATCTGTTTCAC----GAAAA------AAGAGTGCAAACACTTGATGGCCCTTATAATAGGTGTAACAGAGGAATCCTCTGGATATTTAAAATTCCTG---GTGAATTCTCTATTGAA-AGGAACAAAGGAGATTGAGCAAGTGCAGTTTAGC---ATGCTCAAGCAGCAATGTTAGGCCAGAGTTTGAGGT---GGGTTGCAAGCA-AAGCAAACATCCtaaaaaataaattc--atttaaaaaaatatCAGTCGAATCTTACCTGGTATCTGTCAGGAGTGTGGCCCTTTAAGATGTGCCATACATCATCTGTGTGCAAGCCGGCATTCTCACCCAGCCCC-AGTGAGTCACACAGAATAAATGGCAGGGGGTCACTGTCATCCTTGGCCTTGATGGAATATGTCCTGTACTGAAAAGTGAAAGACAACAACCTGAAAACAGCATTTCTTTTTTTTTTTTTTTTGCTATAAATTTAAATAAAGTCTACA----TAAGATTGACTGGCCAAA-TAGTTCCCAATACAGTTAAGTTGAACCGAGAAGC-----CTGGGTAGGCTAAAATACAAGTACCTTGT---CAGAGATTCCATCTTCATCACAGCCCACCAAGATCTGGTGTGTGATGCTGCCCTTGAACACAGACTTGACTGAGTTCACAAAGCTAGACTTCCCAGCTCCAATAGGACCCAGCAGCAGAACTCGTGTTTGCTGAACCAGGTCTCCATAGGGCTTGTAGTCTCTCAGGGCCTGCAGTAAATTACTATGTAACCTGTTAAGACGTAGCAAACATTAAGAACTGACT--GGTCGGCTCAGAGGACCTCACCATGCATCTTCTAATAAGTCACTTCTCTACCCTATAGCGTTTCTAATTAGCAGCTTGCCTTCTTCC
s HiC_scaffold_1 138336411 977 + 233722169 GAAGACATCCGAAGTTTATAATCTCA-GAAAGCTGCCACATTGGCCTCAGGCTCCCTGACCTCAGAGTTTCTGATGCACAAGAAAAACTAACTGTGTGAAGAAGTTTATACAGTTAGATTTCTGTATTATATTGGCAAATTTTTGAAGATCAAATAGCATTCATAGCCTTTACGACAACTATGACAAAAGAGTCCTCCAGATATTTGCATTCTTTGTCAATAAACAAACTTTCAAATAGGAACAGACGAATTTGAGCACATACagtttttttaaatgctgatGCA-----------CTAGAGTCTGAGGTTGTGATCAGTGGGCagaaataagcatttttaaag-taaattctgATTTCTCTGTG-ATGAGCCAGCTCTTACTTGGTATCTGTCACGAACGTAGCCTTTCAGGATGGAGACCCTGTCACCTCTCCGCAGGCCTTCATTATTACCCAGCCTGGAAGGAGTCGCACAGAATAAAGGGCAAGAAGTTGCCTTCCTTCCCACCTCTGATGGGATGAATCCTATACTACAAAGGGGAGAAGGGcaaatttaaaa-----------tcatgtttatttttgttgtacatTGAGACAAAGTCTACAGTAATGCAGTTGATCAGCAAAagtcttttcaaaaataattagtTTAAACAAAGAAGTAGAGACTGGGTAGCCTAAAG----AGTACTTGTTATTCAACTATTCCCCGTGTATCAGAGCCTACCAAGGCTTAACGTGTTCCATGACCTTGGAAGACCAACTTCATTGAGTTCCAAAAGCTCAACTTCCCAACTTCAAAAGAACCCAGTAGCAAAATTTGTATTTAGTGAACCAGATCTCCAT-TGGCTTGTAAGTTTTCATGGAGGATAATAAGTTCTTGAGT---CTATTTACTCACAGC---TTTTAACAAATGACCGAGGTTAGGCCACATGATCT-GCCATGAATTTTCTTAGAAcgtctttcttt-tcctat-tcctCTTTCATTAGCAGCTTGTCTTCTGCC

a score=15217
s chr3           151749120 838 + 160039680 gtaggtttatctgagcaa-----acttaccttcacatcgaaaagcttcacactcctgaaTAGGTATGACATTATTGCGAGCAGTCAGTTGGAGCATTTTACAGATTGCTGAACTTACAATCACAGCTTT------CTCATCTAATA-----GTATAGAGAAATCATTAGTTTTTCTTTTAT----GGAACAATAAATATGGTGAATCTGGTCCTTTTGCACATAGTGAAAATCCAGTCTCTTGGAGTGCAAAAATGGTGATAGAAACATCTTTTCCCTGGAAGCC---CTCTTTCAGGTACATGCCAATAACACACTTTTCACTGTAAACCACTATCATGGTAGGACCTTGATTCTCACATGTGCAGAGCAAATTCTGATGAGAAAACTTCTGCACACTCGCCTTGTAAAGAAGACAAAAACGTTTTCCTCCAAAATAATTCTGCAGGCACTTTTCTTGCTGCCATGTCAAACGAGTTCTCATGGCCATACTT--CAGTCTAGTGGAAAAGCCCTCTTAAAGAGCACAGTCCTCTTTAAACACGGAAGTCTAGAAAGACAC--------ACACAAAGCTCTCATTTACTCCAATTG----TCTCA--TAGAACCCAGGAAACTAACAAACAAGAGACAAACCTGTAACAAG-AAAATCTTTACAAAAATGTTCATTT-AAATAATTGCTTTC-------AATCTTTT---AAATACTCCTGTTTCCAAGCAAATAAGGTAAGTGGAAAGAAAGCTGTAGTGCA--TACCTGTGTGAAGAGTCTGTACCGAGGCTGGCACCGAGGAGGGCAGCTTCTGTCTCAGTGACCAAGCCTGTAGAAAATGAAGAGAAACTTTTCCTCTGTTTGCCTCATCCTG---CTCGGGAAACGAAA
s HiC_scaffold_1 138340120 855 + 233722169 GTAGGATTATCTGGATATGAAATACCTACTGTCACACCTAAAAGCTTCACACTCCTAAATA---AAACCATTATAAACTCcagaaattttaagattttcatgTACATTAGTGCTCACAGACACATATTTGAAGTACAGATCTATCACGaattcataggaaaatgaaaattttgtcttCAAGTCCAGAAACAGTGCAGACCATACATATACTCCTATGTTACACATGGCGATTCCGGTGTCTTGTATTGCAAAGATG-------AAACTGCCTTTCCTTGTGGATTAGGTTATTGCATGTAGACTCTAGTAACACATTTTATAGAGTACACCACTGTTATACT-GGCCCTTGGTTATAACATCCCTGCAACAAGTTTTCTTTAGAGAATCCGTGGATAGTGGTCTTATAGAGAAGGCTAAAGTGTTTTGCTCCAAAATTATTTTGCAGGCTTTTTTCTTCAGACCCTGTC---------CTCACCGACATACTTCGCAATCTAGTGGAAACGCC-----------CACATTTCCCATTAAATATTGGGAAACAgatatgtactttttaaaaaaaaaaactctcaattCTTCCAATTATTGTTCTCAGTTACACtgtataaaactag-aaataag---taAACAGATATCAAGAAAAATCATAACCTAACTTTTCATTCAAAATggttacttctttaaaaaaatttttttaaaaagacatttgtcttcaaataacaaagaaaaacagaaagcaggc---agttCATCTACCTGTTTGAAGAATCCGTGTAAGGGCTGGAGCCGTGGATAGCTGC-TCTGTCTAGATGGCTAGGCAGGAGCAAACTGGGAGGAGAAATGGCCTTAGCATCCTTATCTCTGAGACTCAGGCAATGAAA

a score=4953
s chr3           151769412 259 + 160039680 AAAATCATAAATGTACTTATTTTATCAATACATGAACCCATAGATGAGTTCTTTACTGAACATGCTGTTAGAAAGTAGTATGTAGATGGCGGAAGCAGGCCACTGGTAATGGACCTTGGAAGACTTTATCTTGTCCCCAGCTCTC--------CTCAGGCAC-----------------------CATGATACAAGCAGTTCTGTTCCACAATGCTCTCCTTGGCATGAGTTCAGCTGCCCCACAAGCTCACAGATTATTATGGACCA------TGATCCAAAGTAAATCTTTCTT
s HiC_scaffold_1  31217191 284 + 233722169 AATGTCTTAAGGATGCCAATCTTGTCAACAGATTAATCCAAGGATAAGTTCATGGATGAATGTGCTGTGAGAAGGTGGGGCCTAGCTGGAGAAAGTGGGTGACTGAGGGTGCAACCTAAAAGGGCAAATTTTTTCCCCAGTCTCCATTTTTCTCTCTGCCACTTCCTGCTCAGCTTCCAGGTTGTCATGAGGTGAGCACCTTTCCTCTACCATGCCCTC--TGCTATTGTTTCTGC-------AAAGCT---AGACAATCATGGACCAAAACCGAGAGCCAAACCAAACTTCTCTT

a score=4198
s chr3           151769415 120 + 160039680 ATCATAAATGTACT-TATTTTATCAATACATGAACCCATAGATGAGTTCTTTACTGAACATGCTGTTAGAAAGTAGTATGTAGATGGCGGAAGCAGGCCACTGGTAATGGACCTTGGAAGA
s HiC_scaffold_1  76250665 121 + 233722169 ATCATGGGAATGCTATACTTAATCAGTGAATTAATTCATTAATGAGTACATAGCTGAACAAGTTGTTAGGAGGTAGAGCCCAGATGGAGGATGTGAGTCATTGGGAACATACCTTTAAAGA

a score=5093
s chr3           151769415 258 + 160039680 ATCATAAATGTACTTATTTTATCAATACATGAACCCATAGATGAGTTCTTTACTGAACATGCTGTTAGAAAGTAGTATGTAGATGGCGGAAGCAGGCCACTGGTAATGGACCTTGGAAGACTTTATCTTGTCCCCAGCT------------------------------CTCCTCAGGCACCATGATACAAGCAGTTCTGTTCCACAATGCTCTCCTTGGCATGAGTTCAGCTGCCCCACAAGCTCACAGATTATTATGGACCATGATCCAAAGTAA-ATCTTTCTTCA
s HiC_scaffold_1  31759367 284 + 233722169 ATTACCGAGATGCtaacttcattaaaat-ttaatcCACAGATGGGTTCATAGTTGAATGGGCGGCTAGGAAGTGGGACCTAATTGGAGGAAGCAGGTCACTAGGAGCAGCCCTTTGGGCGATATATCCTATCTCCAGTTCCTTCCTCACTCTGGTCTTTTTATTATCTGCTTCCTAGCTCTCATGAACTAAGCTGCTTTCctctaccatgctgtttttgacTTAGaatcagcca-accatggact---aaaccctctGAAATTATGAGCCCAAATAAcacttttcttca

a score=3991
s chr3           151769416 141 + 160039680 TCATAAATGTACTTATTTTATCAATACATGAACCCATAGATGAGTTCTTTACTGAACATGCTGTTAGAAAGTAGTATGTAGATGGCGGAAGCAGGCCACTGGTAATGGACCTTGGAAGACTTTATCT--TGTCCCCAGCTCTC
s HiC_scaffold_1  33557466 143 + 233722169 TCATGAGGGTGCTAACTTCATTGGAGTGGGAAGGCATTGATGCATTCATGGCTGACTGGGCTGTTAGGAGGTAGCACCTGGTGGGAGGCAGTAGGTGGCTGGGAATGTGCCTTGGCAGGATATATATACTGTCCCTTTCTTTC

a score=4606
s chr3           151769432 317 + 160039680 TTTATCAATACATGAACCCATAGATGAGTTCTTTACTGAACATGCTGTTAGAAAGTAGTATGTAGATGGCGGAAGCAGGCCACTGGTAATGGACCTTGGAAGACTTTATCTTGTCCCCAGCTCTCCTCA----------------GGCACCATGATACAAGCAGTTCTGTTCCACAATGCTCTCCTTGGCATGAGTTCAGCTGCCCCACAAGCTCACAGATTATTATGGACCATGATCCA-------------------AAGTAAATCTTTCTTCAAGTTCCTTTCCTAACCCATTTTGTCACAGT-ATAGGGAATCTTACTATTGCAGTACATAATGACACATAA-AGGTCAT
s HiC_scaffold_1   9853289 346 + 233722169 TTTATCAGTATATTAATCCTTTGATGAGTTTATAGTTGAATGTGCTGCTAGGAAGTGGCAATCGGTTGAAAGAGATGAGTCACTGAGTGTGTGCCTTTGAAGAAAACATCTT-TCTCTGGCTCTTCCTATTATCGGTTTTACCTGGAGGCCATGTATTGGGCAGCTTTCCTTCTCCAGGCCCTTCTTACACAATGTTT--CTTCCTTGCAGTCATATAGATGACCATGGACT-TGGCccactgaaactgtaagccaaataagctggtcttcttttaaattgtatc----aagtattttgttctagTGACAGGGAAGTTGACCAGCCCATTAACTAAAAGCAAGTGATAGATCAT

a score=30604
s chr3           151781819 1622 + 160039680 ACACTTAGGTCATTTTCCTTTGTAAACTGGCCTGGTGACCCTCCCCTGTTTGGGGATGATGCAAAATTTATTAAGGCCCAAGTCCCAGCAGACCTTGA--AAACTTCCCTTGTATTC-------CCTGAGCTGCAGTGTTACAGTATCCATAGCACCA---GATATATTCACACCTGTGCACCTTTGAAGAGATCCATCTCTGTGCCCAGGCTGAGGTTTCCCTGTGGTCTCTGTTCTCATTTTCTGCTAGAGTAAATT----CTACACAAA-CACTTTAGGGGTCACCAGAAGGAAAGG---------------------AGGATCATTTAATAACA------ACAAATATA------AATGA---TTCCAATTTATATGTGAAAAAT-AGTTCCAAGGAGTTTGAATAATAGACTTCTATTTGAACAAATCAAAGAAAGAGGTATTCATTT---ATTAATCAGTGAGTTTCAAATGCTTTGCAA-ATCCTAAGTACAAATTCATTAAGGCTAAAGACTATCGGGTATTTTCTAATTAATTATAGCCAATCTAGGCTT-----TCCTGCTACATTATGCATTCTTATAAAGGAAATATTGGTTACTCAGTTGTCACAGCGCAACAATTAATACGCAGTTTTAATCTGTGGCTTTTAAAATAGCATGCATTGAAAGGAGTTCAGCAAATATTTGTTAGAAGGGAAGGTAGGACATGGGTTTCTC-TAGAGGTGATATTATGTTACAATTTATACCGGGTGAT-----CAGTAGACTGGAACATCTGTTTTGAAGGGCATGGCATGTGGAGATCAGTCACCAAGACATGCTGTTTCTACTGATG-GCAAA-AGACAAATCCTCTATTAAAGCTCTGTTCTACTGCTGCATCTTTCTGCTTGATGACTTAGTGGGCAACGCTACGGTGTGATGGCCCGCCTGTCCTTACAGACAGTCTTAGTGGagctgacgtcaagtgatccatacacttccttatcatggagatgcttcacttcacccaacccagccctttgacaccacttttaaatgttcaaatatgtgagcctaagagggctgtttctcattcaaattgcttcacaTACTTACCAAGCAGAATATACTTTCAGAAAGCTGAAAGCCCAAATAAAATTATGTTTATGTTTT--TATGTTACAGAATAAGTGTATACTTTAGTGTTGACAGGGAAACTCTAAATTATCTCTATCTTAATGATTATTAAACTGCTTCCTAGAACTTTAAAAGAGCTTTACAAGTATCATGCTTAGCTGTGTAAAGTTTTATGAAAGAACTAGAAGT---AGATAATAAAT-GATCatatatatatatatatatatatatatatatatatatatatatcatataAAATCATATGATTAAGGAAAAGGACTGAATAAAGTAACTAAAGGACACCTAAGTGTTTTGACAAAAGTAACAGATTCCAGATTCTGAAAACACAATTCAGCATATGTGATTATAAAACACTAATTAAATATTGTCA-----ATTCAGTGCAGGCCAAAATACAAAACAA--GAATGAGTAGAAATAATTTTATTCAGTTTTTTAATA----TTGCCGTGAAATTGGAGGTCGTATTTTACTAGTTGAAA-----AATACACATGTGCTATTTATTATATGTGGGGTTTTTTTCGTTATCAGTTGTATTGGTTTGCTCCCCTTTTCTCAACTAT
s HiC_scaffold_1 138365555 1564 + 233722169 ACCCTTATGTAATTTTACCTGGTAAA-----------ACCTCTTATGGTTTTTGGGTGATTCAAAATTAATTAAAGCCCAAGTTCTACTGAAACTGCACCATATTCACTTTGGACTAAATCCAGTTTAAACTCCAATGACA-AATATTCCTAACACCCCATGATTTATCCATG--TGTGTAACCATAAACACATTACTCCATATGCCTGAGTTAAACTTTCCCTATTATTTCCATTATAATCTTCTCCTAAACTGATTGATAACTACAAGAATCAGTTCAGATGTCACCAATGGAAATGGGTATATATTAATGTgttacttattattatttattaaaatattgagcAACTCCACAACAGAATGCCATTTCTactttatatatgaaaaattggTTCCATAATGTTTAAATAATGTGCATGATCCTGaacaaatcaaagaaatatgTATTTGTATTATGTTAATCCATGAATTTCA--TGATTTCTAAGATGTCAGGAACAAATTAATTTA----------TACCAGGTATTGttaaattaataaaacccaatatgggtttcaaatttctattgttttctg--tttttaagaaagGAATATTGACCATTCAGGTGTCGTAGGTTAATAATTAATGTGTAGTTTTAAtatatggattttaaaattaGCCAAGCTGAAAGGAATTC-TCAAATCTTTGTTAAGGGGGAAGTAAAGCTCGGTATTTCACATGAAGataatattacattata-tttatACAAGGTGATTACTGCAAGAAACTG-AACACCTGTTTTGAATA--ATAGGATGCAGGGATCAGGGGTCAATCCATGTTGTTCCTACTACTGTACAAATAGCCTGCCCATCAACTAGTGCTTTATTATGCTGCTCTTACTTTATGCCCAATAAATTCATTAGAAATATTAAGAGATTATGATTTACCTTCCATTATGTATGACCTTAGTAAAACTGAGTTCCAACGAAGCATGAACTTTGT----ACTGAGAACTTTTGTTTTAACCAACATACCCAGTTGAGAC--------------------------------AGGG-----------------------ACATGT-----------AATATACTTGGGGAAAGCTATAAAGTCAAATGAATTTGTGttgatgttttgatatattaTACAGTAAGTATGTATTTGAGTGCTGACACTGAAACCCCAAATTATCTTCACTCTAATAGCTGACAAACCACTTTCCACAGCTTTAGAAGAAACTTGGAAATATTA-GTTTATATGTATAACAGTCTATGAAAG---TTGAAGTTAAAGATAATAAATAGGTTAT---------CATATAGATACATATAAAgatataacaataaaatataaaac------atttagtaaaaaataaaaataaaacaactaaacAATAAA-AGATGTTTTGCGAAAAATAATAGATCCTAGATTCTGAAGTC-TAGTTCAATCCATCCCATTACAATATTCTAGTTAAATACtacaatatttatacaaaatatgtCATGGTATGAAAAAatggaattaat-taattaattctatt-atattttaaatactatttacACAAAAAATGGATataacattttcttaattttaaaaactaatataaatGGG----TTAAAATATCTGG----Cttctcattat-----------------tccttttatctcaATTAT

a score=22425
s chr3           151791923 976 + 160039680 aaaattgctctctgagatattcattggaatta---tgaatctctagttgaaactgagaaaaactggcagcttaatattgagtcttccaatccataaat---------ttttccattgattagtatttttaaaaatatcttcaattaacagttatcaatttcaacatataggtcctatatatattttgtcatatttctatgtaaaggggtcattt-tgttgatactattttgaagtgagatttttgtggacttttttaaaatttcaaactctaattgtccatt--------agagatatggtgattggaatttatctgtagatcttgtagtccgtgacattgctaagctc------aactctcagtcctaaggaatgttgtagattttt---CCATGTAGATACAGAGAGAACTGAGACAACTGTGCTTCT--CCACCCA--TTCCCATTTACAA-TGCAGCCCCACGGTCCTCTGCAGCCTCATGAACTCCGTGAGCTTCTCCTCGCATTGCTGAAATAGAGATTATAACCAAT-----AGTACTCCTAAATTTCATCAGTGTGCTTTTGTGTCTCTTGAAGAAGCTAGCAATTGTATTAAAGCTACATGA-TTTGATGAGCAGATCTCTGCACTGTGCCATCCAGTTCTTGTCTCTAAACCAAAGGAATACCAGTCATCCTTGCCTGTTAACTCATATATCAGAGTCTGTCTTTGTATCTCTGTACCTGCCTCTGCAACCTGTTTTTTACTTAATTACATTTA-TAAGAATGATAATCTTTATTCCCAACTGGATGTTTAAATTATCCACACAAATTTTTGTTTTGTTTCATGAGACTAGACAGCTCCTAGATAACCCACCATAATTT-CTGTATTTTCTTCTAGTTATATTGACTGGCTTGGTGGCCTAAGCTTTTTCTTTTCTTTCTTTCTTTTTTTCTGAAAAATGGGGTAAGTTTATAGAAAGCCAGATATAAAGATTCCCAGGTGAGCTATTGCC--TTTACAGGTGATGTAAAA
s HiC_scaffold_1 138379818 980 + 233722169 AAAATAACTTGCtaaaattttgattgggattacattgcaTCTATAGATCAGGTTGGAAGGAATTAATATCTTCATGTTGA--CTGCCAATCCATGAATACAAAGTATTTCCCCAATGActtatatatttacaattttatttcatcattgttCATAATCTTCAACATATAAATCTTGCCCAAATCTTTTTAGATTTCTGTGTAACCTTTTCATTTATGTTGGTTCTATTTT-AAGtggtatttctgt------ttttg---tttcaacCTCTAATTACCTGCTGCTCTTATAGGGAAATA-TGATTGGCTTTTTTGTGTGGACCTCATTTCTTATGACACTGATAAGTCTGAAAAGaagttacagttttaaaaatcttagtaGATATTTATATCATGTTAAT--------------GACagctttatttcttactttccaattttctatttataaatatatccacACTATTCTCCACAAATATCT-AATCCTGTATGCTT-TCCTGGCATTACTGAAATAGAGACTGTGTCCAATGTATTATCATTTTGAAGTTTAATTGGTATGATTT-GTTCCCTTTAAAGAAATTAGCAATGATATGAAAATAGCTTAAATTTAATAAACAGTATCCTCATCTTTATCATGTAGTCCTTAGCTCTAATTCAATATATCACCATCAATCTTTGTTTAT--ACTTATACAACGGCCAGCAAATTTCAATCCTTGTGCCTGCCTTTACATCCAAATGTTTGTTTAATTAAATTTCCTACGAATCATAAGCTTCATTACCGATAAGACATTTAAATTAGCCGCATAAATCTTTGGTTTGTTTGATGGATCTAGATAACTTGCAAATA--CGTACATAATTTGCTATAGTGACTTTTAGATGTACATCTTAACTGAGTAGTCTGAGATTTTTCTGccatcttatttaatttttttaacaaac----tAAGTTCATAGAAAGCAAGTTATCCAGATTTCCAGTTGA---ATTCCCATTTAATGGGTAGTATAAAA

a score=47179
s chr3           151796612 2855 + 160039680 CGTTCTTCTTGTAGATGTTACAGG------TTTCTCAGAACTTACAAATAGTGATTCCTAGGTATTGTTCATGCCTAAA------CTAAG---AAACAAAATCAAATAGTTAAGTGGGTTTTGTTTAA-TGTTTTTAAGAAGCTAAAAGTGGTTTCCTTTTATCTG-TGTTGAAATCATTGGTGCTGCCTACCTGTCGTTTCTGAGTTCTGGAGTATTTTACCCCA----TCCTTACCTGTCCCCTTTGAGATCAGACCACTGCAATACTTACTTTATCGGGAGATGGGTGAGTGAAGATCATCCCTCCAATCAAGGCCTTAACAGCCTGTTAGATGCTCTGCACTCTCTGCCCTCTGGAATGAGCAGCAGC-----CTGTGATGGTGGCTAATTCAT-GTTTGAGTCCTC-----TGAGCCCAGTGACCAAA------TTTCTTACTAGAAAGGAGCCACAGGCAAGGGACACAGTTTTGTGAGGATCACGGCTCTGACATTTG-AGGCTGTTTGATATTATAGTCATCTATAATAGATGATATAGTAGATTACTTGACTGTCCCTACACCACCAGATTTTAGAATCAGTGAAATCTGAACTGTGGTGTGCCTAGG-GAAAGTGAAGTTCAGATAAAAGAACCACAAAGGTCACAGAAGAGTGGGCAGGAAGGAGAAACAAAAACATGAAAAGCAAATTGAAGTTCTTCCCTCCCAATAACAAACAGAAATGAAAATTCTCCTTCAAGAGTCCCACATTTGTATGACTTTCTAAAGCTAACCTCTCATGGTAAGTACTCATCTATGCTGATCATAAAA-TCATTTAAAGTTTCAAGCTAGCTAAAGCTTTTACATAACATGCAATGCATACTAATGCAAGTAGCAGTATATCCATATCTTTTTCATTTACTTTTTTACTACAAGTATGAAGAACACAAAATGCATTTATTCACATAACAACAACAACAAAAACCCCCCAAAACAAAAAACATTCACTTCCTCTCCAATTGAAATGTGTCAGGAATGACTTGAAATCCAACACTATTTACCAAGTGGTAAATTCTTCTGACAACCAGGTGAAGAATTCAGAAAATGTACAGTTCCAGTCTTTATATTCTGACCATAGAAAACAGTTCATTTGTAGCCCTTGGTGGCACACAATGAAGCAGGCAAGCAACTGTCCACCCTGTCTCATTCCACATATTTAGTGAGTACCCTTATTTA-GTCCTAACTTCATACTAGACACTAAAACAAGGCAGG-GTGCCTTTT-AATTCTGAATGTGA--GAAAACTATTTATTACA--AAACAGACATATCCATTTATGTGCA--CATTGACATCTAGGAATTCTCTGCTTCA--TAGACGATTAGAAGCAGAATCAGGTCTTCAGAA------------------TATTTCTATCCC-TCATTAAACCCACTAGTAAGTGTCTTG-----TTCGGGGGTCATACCCATAGCTAATTACAATTCAGTA----TAATCTCTGTATATGCAACCTTGGGAAATGT-GACATGTATTTTATCTCATTTTCATAAAAGATTTACAAAGACTCCAAAA----AGGTTTAGT--GTTTAGTGTTTGTTTGCTTATTAAGATTGCAATTCTCCAAAGGCCCAATGTTTCCATAGACTGTGAAGCTGTGCAGACAACAGTTTACCTCATACAA-----------------------CAGACTATAAATGTCAAAACGG---CTTAAACACTCACACTAGTGAGCTTGTTGGAACTCCTTGTACTGTTTATTTTAATGAATAGGAAAAAGCACACTTTTACTCAG---GCCTATGTAAGTTATCAGAAAATGCATCCTCGATTGCCTACTGCACAGTAAACTG-TATACAACAGCCACTATA---------ACAAACAAAATTTTAGAGTCAGGCATAATATG--------------------------------------------------------CAAC---------------------------TTCTTCAATTTTTTATATTTAC-----------------------------------------------ACTGTGGGTTATTCTCATCAC------------------------------------------------------AAGATCAGTACTTTTACCCTAAAAGTTTGCTTAGATAGTATAGATAAATCTTCCAGAATATGCACTGAATAAACTCCTTGGCACTTCC----CAGAGCTTTGCCTTCGTCACAGGTTGATGTTAAAAGATGGTCTCATTGTA------------------GACATCACAGCAGTAGAGGAACAA-TTGTGTCCATATCAGAGGCTCACAATAAAGAGCCCTGGAGCCTCGAAACAAGTCCCTTCTCAGTGCCTTTCCTCAGTTGAAATGCATGGTCATGTTAACTGCAGAGTTTTACCAACTATAATTAGGGAAGACAGAGACTTGGTTCTTCATGCCTCTGTTTTTAAGATGCCAACATCTT---ATTTCTGTAGAAAATAA-ATCTGCTCAGAAAGTAAGTGAACTGTCGGAAAGTTTGTCCAAGCTTTGAGTACTCTTGAAATGAAAGATGATAACACTTATGTAATGCAACAGTAATCATAAATT-GTAATGCctttttacaatcatatgcattctacatgtacatgcacatacatatacacacatattcataaacactcacatgcatgcacacaggaacacacatacatatatgtatacatatgtacatcacaAAAACCAGCATGTAGCTGTCAGCTTAAATTTAAATTGTGCATGCTCTTTACAACTCCGTGCTCAAGTTACACCA-AAAATCATTGTCTAT-----------------------------TCTCTGATATATTCTCTACATAGGAAT------CAGTTGTGCGATTGATCACTT----GTCTTAAGATTATCACATAATAGT--GTGTATTCCTTTCGAATCACT--ATAAATAATTTCCTTTAAGTCTTCAACAA---GACTTAAACAAATTAAGCTATTAGCTTAATTTCTTTCAATTTACTTAGGAGAATTTACCAAAAGC------AGTAATCATATCTAGTGTAAACTACCAATCAAAAGCAAAAGTTTTTGAAGATAGTATTTTGAGTCC--TAGAATCTGAAGTCATTTTTATAGA--TAAAAACAATTTTGAAAggctggagtgatggct
s HiC_scaffold_1 138429617 2986 + 233722169 CATTCTGCTTTCAGAGATTACAGGACCACTTTTCTCAGTAATCGTGAAGAGTGAATCCTGAATGTT--TCATGTCCAAGATgtttctaagttaaaaaaaaaatttttaatcaaaagaTTCCTGTTTAAATATGAGTAGGAAGACAAGAATGACTTTCTTTTACCCAAGGTTGAAATCATTAGCATTGTCA----Gttctccctgtgt-------------agcccagatgCACTTACCTGCTCCCTT-GACGTCA-CCTGCTTCAAGA--TGCTTTACGGCCCTATGTATGAGTCACCATGA------------------------CCTGGTA------------TCTTT-CCTGCTAGTATGAAGAAAAACGGCAAATCTAATGGCAGTTACCTTGTTACTGGAGCGCTCAGAAGTGACTGTAGTGATCCGAGCGCCCCTTCAGAGTAGACAGGAGCCACAAGTCAGCTATAAACCTTCATGAGGTTGGCAGCACTGAGATTTGCGGGGTTTCAGTTGTCACGGTCATATCTAG--------------GCTACCCTAACCGTCTGTCGGTCACCAGATTTTGAAAATGATCGGATGTGAATTGTGCCCTGCCTAAGTAAAAGTGAGGCACAGGAGAAGGAAACGTAGATGTCATAACAaag-------------------------------------------------------atagcaaataaaaataggatTTTGTGTTCAGGATTTCAAGTTTTATAGGATCTTCCTTAAATAACCACTCTTGATAAACATTAAACCatgtttattataaaaatcaCTTGAAGTTTGAAGCCAGTCAAAGCACTAAAATTACATGAGCTCCACACCAGTGCAACCAGCAACATATACATATCATT---ATTTAACCTTCTAT----ATTGAGAAGAGCACAAAATGCAATTATTCACATAACAGAGA---------------------------ATGTATTTCATGTTTTGCTAAAGTGTATCAGTAATAAACTGAAGTCCAACATTATTTACCAGGTGATAAATTTTTCTGACATCCAGATAAGGGAGAAGGAAAATATAGAATCCTTTTTTTTACACTCTGTTCCTAGAGGA----TCGACTGGAGCCA-TGGTGGTGTAGGTAAAGAC-----AGCAACAGTTTTCACAAAAGCTCGCCACATGTTTAACAAGTGTTGTGACTTAGGTTCTAAGCTCAAATTAGGCACAAAACTAAGGCAGgtttgtcttttaaaatcttaatgtAAACAAACACAATTTGTTACATCACACTGATACatctatatatgtgtatgtatcaaTGTTTAGGGATTTTCTACTTAAGCTACACAGATAAAAGCAACTTTCTGTCTccagaaaaaaaactttaaagggcCTGTTTCTATCATGTAATTGAACCCATCAGTAAAAAGCCTGATGTTTTC---AGTTGTACCCGTGGCTAATTATGAGTCAGTATTCTTTGTCTTTGTATTCATAATCTTAAAACCTTCAGgca---attttatctcattttttaaacaaact-----aGACTCTAAAAAAATAGCTCTGATACGTTTAGCATTTGCTTG--TAATAATATCA----TCTCCAAAAATCATCTGTTGCAATACTATGTGAATCTGCACTG-CAATGCTTTATAGTATGCAGAGCTAGTCAGTTACACATTAGATAAAATTGTGAGTTTTAAAACAGAGTTTCACTCAGCCAAACTGGTGAGCCTGTTAAAACGTTCTGTACTATTTACTCCCAAAAATCAGGACAAACA-ATATCCAATTGGAACACATACGGAAGTTATTGGTGTATGCTCCCTCTATTGATCACTATATGGTAAACCGCCAAACTATAGGCAGCACATAGAATAAGAGAAACAGAATTCAGAAGCCAGGTACGAATTGAACACATTGGTGTGTTCactataattttgttttccttggtagggaaaaacctaaaacaacacaaacacatattctttgagtgttttttttttcaatgttcaATGTCTACTTGGTGCATTTCTCATTGTTttaaggccttttttttttttaatcggtactggggatcaaactcacaaccacgcgcttgcaaagcaggtgcttatgcctgctgagctaaatcctcaaccccttAAGGCCAATTCTATTGCTCTAAAACTATGCCTATGTAACATAGATAACCCTT-TAGAATATGCACAGAGTGACTCCTTTGTTACTCCCCAAACAAACATTTGCATCC--CACACAATGGCA-CACAAGATTTCTTCAGTGCAGACACACATGGCTAAGGTGACACTGTAGCAATAGACAAACAACTCTTGTCAATGGATCAGGCTCCCAGAGAAGAG-GCTGTGGCCTGTGAATCAGTTTCTTCCCAGTGTCTTTCCCCAGTCAAAGCACATGAAAATATTCACTGCAGGTTTTTATCCAATGTGGCGAGGAAGGAGAGAGATTTGCTTCCTTGTGCTTTATCTCACAGAATACTACCACCCTTAAGCAGCTCCAGGAAATAATAACTGGTCTGAAAGTAAGTGACACATCTGAAAGTTCTTCTTCCCTTTAAGTGCTCTTGA---GACACATGAAAACATTTATGCAATTTAAC----ATCACAAATTAAAAATGGCTGTTTTTAGAAATATGCATT--------------ATATACACctacacgc----------------------------------acacacatacatatatacatacatatatacaccaCAATAA--------TAGCCATTAGCTTAAACTAAAAATGTGTGAAAACTTCGCAATTTCATGTTCAGATTACACCAGGAAATTCTTGTTTATAATCCAATTTGTCAAGTATTCATCTAGCATCTATTATGTGCTATTTATAGGAGAATAAACTGAAGCTATGTGTTTAATCATTTactggttttaaaaatatcatgtgccatttcatatgtttctttgaactcactgagaaaatgATTGCCTTC-AGTCCTCACTaattttgcttaatttcttttag---tttgcttaatttcttttagttcattagtAAGAATATTCCAAAATTTCCCCAAATTAACAATTGCAATGTAAACTACCaactaaaagcagaaatataTGAACATAATGTTTTAAGTTTAGTTGAATTCAGAGATTTTCTTGAAAGTCTGACATCAGTCTCAGAGGGCTAAATTAATTACT

a score=70510
s chr3           151800261 4810 + 160039680 [encoded data, 5273 characters]
s HiC_scaffold_1 138432520 4620 + 233722169 [encoded data, 5273 characters]

a score=13306
s chr3           151811491 594 + 160039680 AATCTGAGGCATTTTACTTTTAACTGTGCATTTTACAGCTCTGTGAATTCTGG---TTTCCAGTCATGATGACTGCTATTAAACCCACAGTTAAAATAAAAAAAAATGTTTATATTCCAAATAT----------AGACATAG---ATATTTTCATTCTAATCAAGAAGTGTTTATCATTTATGGCTTAAGCAGAGGAATCACAAGGATCGTGTGTATGAACTGCGATGAGAATCACTCGCTGGAAGTTGGTCACAGAATTAGAAAGCCATTGTTTCTCGAGCAAAGCCCACTTTATTTGACTGTTTACAACACGCCTTTTATAGCAAAAGCAGACGGTACCAATAAGGTGTTTCAGTAAACCATCTGTCCTGAAACACAGAATGTTTTTCCAGAGAGAGAAATTTCCAATTGCCCCAGTGGTTTGTTATTACAGTAGTTTGAAAAGATTGCCCAAAGC-CTTTCTAAGCTTTAGCACAATCATTTGTCATTTGATGGGAACTCTTAATGAAGTGGGTGTCCTTTTAAAAATAAAAGACATCCATAAATTTCAGAGAAACTAAGGATTTGAAAAAGCTATCCTAAGCTA------ATAGACCACATGTACTCTCCACA
s HiC_scaffold_1 138440929 543 + 233722169 AATTTGaggcattttatttt-----atgctttcaaaAGCATTGAAAGTTATGGCTCTTTCCAGTTAGGGTTATTATCACTAAACCCACAATTAGGCTAAAAATAT-TAGCTACACTATAAATACTAGGAATGACAGACGCATTGTGTATCTTCATCATAATCAAAAAAGCTGAAA-----ATACCATAGCCAAAGTAACCATTAGCAGATCATctataaattaaagagaaaacaactaACTGAAAGTT----ACCATATTGGAAGCAAATTTCTTCCGGACCAGAGGAGGACTT---TGAGCGTTTACAACAAGC-----------------AACAGTCCCAGTAAGGTGTTTCACTAACCCATCTGCCCTGAGCCACATTATGTTTTTCC--AGAAAGAAATTCCCAACTACTCAGTTGGT--------------GTTTGGAAAGATTTCCTGAAGCATTTTTTAAGTTCTAGTACA---ATGCATCATTGAATGGAAACTTTTAATGAAATAGGTGTCCCTT--AAAGTAAAAGATATACACATA------------TGAAAGTTT------GCTATCCTAAGCCAGGGAGGGTGGAACACCTGTCGTTTCAGCA

a score=4763
s chr3           151812788 117 + 160039680 tCTCTTCTTTAGTTTTAACTCAACATGGACACTAGTATTTTATAGATTAC---TTGCTGACTTGAATCTTTGATCAAATTTGCCTTTGCTCATGGAATTTTCAGTACTGTAAATACCCAT
s HiC_scaffold_1 138441981 120 + 233722169 TTTATTGCTTAGTTATCAGTTAAAATCAAACCTACTATTTTCTAGATGACAACCTTCTGGCTGAAATCTTTGATCAAATTCACCCTCTCTCATGTAATTTTCAGCATTCTAAATAGACAT

a score=35732
s chr3           151815857 1957 + 160039680 TGGCCCTCCTATCCTGCCTGAGGGGATGGGGTCAAAACCACAGCTCGGA-TGCTTCTCCGTGCACGAGCTCAGACTTGGCCCAAAATATGAGCCCTGGAAACATCGCCCTTACCTGACATCACACTGGAAAATGGCAAGATTAAAAGGCTCTCCTGGAAGCTTATTCTCAGGCCCC-AAGGAGTAATCAA--GACAGTGGTTAAAG---ACTCAGCGCCCTTCGCCAAGACCTTGACACAGTCCACCACAGTTAAGCTATGTAAATAAACATGCAAAAGAGCTTTCAGTGTTAAATTACTTTTAAATCGTGAACACACTCAAGACAGGCAATAGAGACACCTCTG-TATGTGTTTTATAATCATTTCTAAATCAGAAGCATACAGTCGCCGACCTGTGCCCTTCACTCAC--------AGCTGA---------------CCACTCACAACTCTCTTTCTGCCCT--GGAGA-TATCCACAAATATT--GGAAATATTCTTTCTTTCATGACTCTATAAACCTGGGCCCCCCAGTTCTTCCACCCTTTTTTCCATTATATTAATTCT--GTTATTCTTTCTATTATGTTGCCAGGTCTTGTGGTATTATTTGCAACATCAGAAAACCCAGCCTTTCCTCTGAAGTTATGTGGAAGGTATTGTCTCCCTGAGAGGCTTTGCAAATAATACCACAGAA-TGGCCTCACTTAAAACAATGTGGTTTCTC-CAGAAACAAGCAAGAGAAAATAAATAGAGATGGTGCTCTAGCCTTGGGTAAACTCTTTAAT-ACAGAAGACAGAGTGGATTAGCACCCAGACTCCCCTGACT--GGGTTGACCAGCTGCCAGGATGAGATTCAAAACCTCTCTAATCCTAAACCCCCAAAGTCCAAATCCAGAAGAGTAACGGGGTCTGCTGGGACCTCAGAG-GAGAGTTGAGTGCGTTAAGCACGTGCATATTAAAGAGAGAGCCGGGCTATGGCCACAGCTTCTCT-GGCCT--GCTG-TATTTGT------------GGAGAATAAATGTGGGAGGAAATCGTGGGGTCTTTTAACCCATGCAGGAAA--AGAAGGTTCATGAATCAACAATAAAACTCAGAAGGTAAGGACTGTCCTTCTCAAAGAGAA---------------GACAGGGAAGGACTCATTTCAC--AAAACAAAG-GCGATATGAGCCCAATTTCAAGGGCATTGGCCAAGAACTCAGTATCTATTCCCTGTAGGCAGTGGTTCTCAGAAAATGAGTTCCTTGAAAAACCATGGATTTCATGGGTCTTTTATAACAGCTAGTTTTGCCCATACCTCCACAAATAAACTACACATTCCTCTGACATTAAGATCTTATTTTAATCGTATTTTATGCCT----GTCTCATGTGTG-AAATGTC--TCCTAGGTATTTGGTCAGTATTTTTC-ATTTACCACTGAATTTTACTGGAGGATAAAGTGCGACTGTGGCCATAATCATGATTAGGA----TCAGGTAGCATCTTTTATTGGACATTTATGAGGTAGTATGTAAAAACTCATATTACCCCCTTTC--TATTGTTATCCATGTACACTCAAACCT------------GAATTAAAC------------ATAGATTCTTAATAATTAGTCAAAGGATATGT-GTCTATTACATTCAA----AGATGGTAGGAAGAAATTATGCAGCATGCTACAGAGACTCGCTTCGTGGATGAGGAGGTTCAAGCATGGAC-AAGAAGACTAACTTCCTTCTCTCGCTGAGGTAGACTTCGTGAATTCCTCAGCATGGAGTCATAACTGACAGAGATGTT-----CACAGACAGCAAGCGTACGGTTGAGATCTCTCTGCGCATAGTGAGTGTCTGCCAGATGTGTGGTGGGTGAATGCA-AACCAACAGAGGAAGTGGA--------------------------TATGATACTTCCTGTTTCCCTGGGGATGAAGACGAGCCCTTTCATCCC-------AAGCCGGGATGAAGTGATC--GACTCAGAAACCATAGGTCTCTCAAGCCAGAATATGCCAAAGCTAATTTTGGTAGCGCCATCTTTCTTTTTCTCTTCAGAAATAGT
s HiC_scaffold_1 138445740 2031 + 233722169 TGACCATTCTACTCTGTCTGAGA--ACAGTGCAAAGCATGTAGCTCAGAGCATATCCCTCTGCATGAACTGACAGTTGTGCCAC--------CACTG-------TGCCATTATCTGCTATCAAATTATGAAATTACAAAGCTGTAAGGCCTGCATGGAACTTGATTCTCAGACCCCCAAAGAGCAATCAAAAGATAGCAATTAAAGTACactta-catatttaataaataccTTGAAA-AGTTCACCAGAGT---GGTTTTCAAATAAACCTGAAAAGCTGCTTAAGATGTCAGATTATTTTTACTTTGCGAATACATTCAGGATAGACAAAAGAGACACCTTCGATACACTCTGTATGACCAACCCCAAACTGAAGATGAATCATCACAAAAGTGCATTAACCAGTCACTAAGAAAGGTCTAAGTAACCCCAGAAATCCCACCAACAGCTGTCTTCCTGTGCTTAGGAGACTGCCGGCAAATACTCAGGAAAT-TTCTTTGTTCCATGACTGTAAACTGCAAGGCC----AGTTCCATTACCCTCTTT-CCAGTGTATTACTTCTctgttattttttccatcaaGCCACCAAACTCTGTGTTATTATTTGCAGTACCAAAAATCTCAGCCCTTCCTCTGTAGTTATGTGGAAGACATTTTATTATTG-GAGGTTTTGCAAGTAATAGCACAAAACTAGCCTCACATAAAAGAATATGGTTTGTCACAGAAACTAaccagagattttta----aaatgaggcttTGCATTCAGGTAAATGacttaataaaaaaagatactatGGACTAACACCCAGGTTTCTCTGATTAGAGGTTAACTAAT--CAGATGTGAAATCCAAAACCTCTCTCTACCTAAACTACCAAAGTCCAA------------AATGGTATCT--TGGcatcttacagaaaaaaatgatcttatcaaatatattaatatgaAGAAGAGTATCATGAAAAGAAAGGAGCTGGTATAAGCCTACGCTGATATTTACTACAAGTTCATGGGAAAAAGTAAGTGAGAAGAAAGGATGAAGTAATTTAactcaagaaataaaagagaaagtttaTAAGCCAAcagttaaa-taaaaagacaagaatTGCATTACTAGGTGAGGAACCAGTCCCATGATCGGAAGGTAAGAACTCATTCCACTAAAACCAGAGTGCACAGTGAACCCAAACCC-AGGACTTTGTGCAGGAACTTGGCACAAA----CTGCAGATGCAATTTCTCAGCAAAGGTGCTCTTTGGAAAGCCTGGGCACACA-GGGTCTTCTGTAACA--CAGTCCCAATCATGCCTCTCTGAAGAATTCCCCATTTTCTTTGTGGTTATGACCTTGTCTTAGTCCTA-TTTACATTTTGAAGTAGCACATGTGCCAATGTCCATGGTGGGCATTCAATACATGTTTTTCAACTCATCACTCAGTTTCACTACAAGGCCATTTAGCATCAGGGTCATAA-CAGTATTGTTACCTGTCATGTAGCACTTTTTAGTGTGTACTTACCCAATATCACATGAAAACTCATGTGACCTGGCTACATCAGGGTTATA---GTACATTATTACCTACTTTTTCAGGGGAATAAAACTGATGCTCCTATATAGCTTCTTAATAATTTGACAAGGGACATGTGGTGAAGTATATTCAAACTCAGATAGTGGGAA------ATACAACAGGATACA---------TTAACAGAAGCTGAGGTTCAAGTATGGACTAAGGAGACTGGCTTTTTAGTCTCACAGAGACAGCCTCAGGTAGTCAC---ATGTGGAGTCACCACGGATGAAGCTACTAAAGACATAAACAGCAGA-----AAACAAGCTATCTCTGCATGGA-TGGGTGCCTGTTAAATATTTGGTAAGTTAATGCAGAACCAAAGTATCAAATGCAACCAGCTTAAATCCAAGTCAGAGGATTCTGGGAATTCA---TTTACCGAGAATGAATCTGATCCTTTTCTCCCAGTAAAAGAAGCTGAAAAACAAACACCTTGACTCAGGAATCACAACT-TCTCATGTTATAATTTGCTGCACCTAATTATAGTTAgaccttccctttctttctcctcagaAAAAAT

a score=47891
s chr3           151818784 4439 + 160039680 [encoded data, 4958 characters]
s HiC_scaffold_1 138449656 4407 + 233722169 [encoded data, 4958 characters]

a score=44203
s chr3           151827267 3844 + 160039680 [encoded data, 4218 characters]
s HiC_scaffold_1 138466741 3686 + 233722169 [encoded data, 4218 characters]

a score=27413
s chr3           151831798 1058 + 160039680 CCATCATTGGCTATTCACTCTATAACAGCTGGTCAGTGTAATA-CTGCCACCTTAGCAATCTCAGTCAAAGTTAACATAAC-ATCCAATC----GATCTATATCTGATAATCACCCTGGAGACTAAATA---TTTAACTACAAAGATGGCCAGAAAGATTTGCATAAGAGTTACGGCCTGTGAAAAAAAATCAAAATTTGATTT-----AATCCAAAAGAAC----ACATTTCTTGGATAAACGCCATTACATAGGAAATCATCTT-GTCCCTCAGATACTTAATGTTTTCCTCCATTTAAAATTATCACCTGTTTCTGAAGAGATCGTAAAGCAAACGC-TAGCCTTCTACAGAGAAAGAGCTGAATTTCAATATTCCATTGCTCTTCAGGTGCTGACCTGGGAAATG--TTAAAATTTACCATTTGGCTTCAGTATTTGCTCAACTCATCCCTTCAAAATTTAGAACCCAT--TCTGGTCAATCATTTGCAATCTCTTGACATTCATCCTACTTAGGTTTTAATCAACCAGTCAACAAGTATGTATTGCCCTACCAAATTAGAGAAATATGCATAGCAATTACAGGGAACTCCTTCTAAAGTTATACATTCTATGAAAAGAGCATTAAAAGGCATCATTACATATATAAAGGCAAAACAAGGATTACTAAGAAATTGTTACTTGAag---ctggacacagcggggcatgcttttaatcccagcacttg-gatacag---------------ggcaagaagatcaccagatgttcgaggacagccatctccacctagtgagt-tccaggtaaacgtagctcaaaagaccATTTTATA---ATTTTTTAACTCTCAGAG---TTTGGAGTGAGCTTGTTTCTATACAGAGCTCTAAGCTAAAATCCCAGTGTGGGTTCTTGAATTTGTCAGCTGGAATTTTAATTGAGTGAATTTATCTGAGTTAATCATATTCACAACTATGAAACACAGATATGGC--AAGCCTAAATGCTACTAGTAAGTTACATTTTAAACAAATGCCATAGTTATTCTTGACTCCTAAATCTCAATTCCTGAGAAAAGCAAATTCTGTTTTCCTCCTCTGTAAAA
s HiC_scaffold_1 138470497 1052 + 233722169 CCGTCGTTTGACATTAGCTGTCTAGGACCTGGTCATCATGACAGCAGTAACATCAGCAATTTCAGTCAGAGTTCAATTAACTATCTGATTCTTTGACCCAAAAATGACAATTACCCTAGTGATCAAATAGTGTTTAACTACAC---TGACTAAAAATATTAGCGTAAGTGTAGCTACCTT----AGAAAATTCAAACCTGAACTCTATAGGTACAAGAGAACGAACATATTTCTTGGGTAAACTCCATGACATAAGGAGTAATTTttgttcttcatatattttatatttttccccaCTCAAAATGATCTTCTCTCCCTGAAGACG--GAAAATCACACATACAGCCTTCTAGCAAAAGTCAGCTGAAATTCAGTAGTTCATAAATCTGTAATCGCCGActtaagaaacagatttcaaattgTCTCTTGGTTTCAGTGTTTGTTTAACTCTTACCTATAACAGTCAGAATCCATATTCTGGTCAATCATTTCCAATCTCTTGACATTCATACCACTTATGTTACAGTCAGCCagtcaacaagtatttattgctCTGCCAAATTGGCAAAATATGTGTAGCAGTCATAATAAATTCCTTCTCATG-TATGTACTCTAGAAAGAGATCATTAAAAAGAATCATAGCACGAATAAAGGCAGAA--------AC--ACAAACTATTTCTTGAAAGCTCTAGTCA---------ATATTGTT--TCCCACCATGCACAATACAGATATTTCAAAATGATGTCTTCAAGATTACTAACTTAGTAGAAGCAG-----TATATCTAGGAAATATTCAGGTA------------------ATTTTATAGTTGTTGTTTGACCCTCAAAGACTTTTGCAGTTAATT--TTTCTAAACGGTACTGCAAGCTAAATGCTTATTCTAGTTTCCtaaagttttctctatgtattataattaaatcaatttatataatttaattatgtTTATAATTGCAAAAACCAGatattgtaaaaattttaaagtcattaat--gctagattttaagaaaatacaatgtTTGTGCTACAAGTCTAAATCTTAATTTCTAGGGGAAAAATAGCACATTTCCCCTTTTTTTGGAA

a score=102408
s chr3           151833112 4831 + 160039680 [encoded data, 5261 characters]
s HiC_scaffold_1 138472789 4938 + 233722169 [encoded data, 5261 characters]

a score=46179
s chr3           151857179 3943 + 160039680 [encoded data, 4362 characters]
s HiC_scaffold_1 138508151 3924 + 233722169 [encoded data, 4362 characters]

a score=26832
s chr3           151874635 1613 + 160039680 ACATCTCTTTGTCCTACTGGACTCTGCTCATCACATTTATA--ACCAA-----------------TTCTGGGACCCCAATCCTCTGAGGGCATGCCTTCTACTTGAAACAAGTCTTTT-TGTATTCTTGAAGGGAAAAATCATCAAGTCTTATTGTAAAGACA--AAAGACCAAGGAACTTAGCTCTCTCACATTCCAACAAACTCTTTAGGGTGGAGGGGACATGTCATC----AGGGGTAACAAAATATCTAGTTTAAAAATC--ATATGTCCCATAAAGTCGAGTGCGCTCATCTCCCTC------AGGCCCTTCTTTGTCTTCTCTGCTTCCAGTAACAATTTCATTACTCCCTTATGTTTTCTGTGTTGGGAAAGATGGATGTCTACCCACAATCCCATTTTCTGAATGCCAAGACAAG--------AACAATTTGGTTGGTTAGAAACTGAAGAAAATGCCCAGAGAGGAAACAACGGAATTCTTCCCTGGCCAACAAACTAGAG-TTTTCCTACAAGGAGCTGGTAAAACACTAACGAGATGCCTTTTGTTTTTTAATTGCTGTTATTCTGGTTGTTTTTGTTTC-ATGCAACCCTGAATTCTTAGTCACTAACTCATAGTATAAACAAGTGTGTCCTCTGGAGAACACTGTGGAATCAGAACATTAGAATGAACAGCCAGGCAACAACTCTTCACGTCTCCCAGGT-GCACTGAACTTTCAGTACTGGGCACTTGATTTCCTGAGCCAAGAGGAGC----AACTGTTCTCTATCTGTTCAGACTTCTCCTGTCATGTATAGCAGCTCTTGGAACACAGGAGTCTAAGGCCCTGACCCTCTACTATTTAAAACAAGCTTTTTTTATACTCTCCCAAGTCAAAACTATCAAGTCATACTTGTAAAAGatatatatatatatatatatatatatatatatatatGCATCCTAAATCTAAACTTCTACTTGGCAAGTTGTGAGCACACAATGCACACTTTTTTTAAGGTAACTAACAGTTACCTTAGTATTCATGAGTATTTTGATTTTTCCAAATCAATATCAGCTTCTAACTCATGTGTCCTCTAATTTTATACTGAAAAACACTGTGAGATTTCAGACATGCTAGTAACATTTCAAAGGTAGGTTATCACTG-----------GCCACTGCCATATATT-----GTCTCAGCCTTCATTCAGCTGTCTAAAGAGTTACTGAATTACTGGGACACATTG-------ATCAAAACTCAAGAATCATTAA--------TTGTGTACAGTAACATACTAGATACCACAACGCAGTGATACATTTGAGATATAAACTAAAATAGAGGAATGC--CCATGCTTTAGT---------------------------GATGCCAACA----------ATACCAGAAAGAACAACTTACTTAAGAATATAATTC--------TACTTTTATTTATTTGGTATACTTTCATTTTCTTGGCATTCTAAAATCCTTTCTAAGCTTTCATATCTTAG------TCTTTAAAATTCTGCCTCTTTGTCCATAAT--AAATTAATTTGGTAAACTAACCAGAAAAATGTGAACC--------------------TAAGCAGTAGCAACACTGTTCACTGCTCTTGGACATATTGTAATTACTGTAATAA----------------GTATAGTTTTACTGTTCCCATCAGGCACCTCTGCTACCAGTTTTTCTACTGCAAACACAGAGGCCCAACAGCTGATTCACAATAGGAA
s HiC_scaffold_1 138533087 1571 + 233722169 ACTTCTCTTAGGCTTCATAAATTCTGTTCATCCTGTTTGTATCACTAAGAGTGATGAAGAGTAGGTTCCGGGATCCCTA-------------------CTGCTTGAAACTagctttttctgtccttttacaACCTCAAACCAATAAGActtcttataaaatttttaaagacaaattaaCTCAGTCATCTCACACTCCAGTAAATTCCTGCATTTGGG-------TGTCTTTGGGGAGGGGGAAAAGAaggtcttattttaaaaactgatacatCCCATATAGAAAAGTGAGTGAATTTGTCTTTTCATAAAtccctccttcttcctcccc-ttttcaataattcttttaatattcattt-tgtttaaaacCTTAAGAAGGATACACGACTGACTATATGCCCTTTTT---AATGCAAAGATGAACTGCATACAATAATTTGGTTGGttagaaactgaacaaaacatCCAGAGAAGACATAA--GAGTTTTTACCTGACCAACAAACCAGAGGTTTTCCTGTAAGGAGTTGGTAGAACACTACTGAAA-ATGTCTTGCTATTTAAGcgtttttgtttgtattgtttttctttccatgcaACACTGAATTTTTGGTCACAAACTCATAACATAAATGATCTTGTACACTGGAGAACACTGTGGTCTCAGAATGCCAAGATGGATCTCC--------ACTCT----GTCTCACTGATGGCTCTGAAGTTTACATCCTGGACACTGAATTTCC-GACACCTGGGGAGCCCCacactcttctttttctgt--agACTCATTTTTTCCCCAATA----CTCATAGCACACATTAGATTAG--------------------------ATGGTTTCTT-----------------GGGCTGTCCTGTCATATT-------------------------------------------TACATTCTCACTTTAAA------------------TGAGTAAAAAGTG---ATTTAATTTGAG-------------------------aagactgttttatttcttctaattcaTT-------------CCATGCACCATCTAACTTTATACTTAAAAACACTTTCAGATTTCACA---ATTTATAGCATTTTACAATTGAATTTTTGTGGAGGAGGAGCAAGCTTCTGCCACATATTTTCAAGTTTCAACCTTCAGTAAGCTGCATAA----CTACTGAACTGCTACTATATACAGTACCTATATTGAAACTCAAGAAACATCAAGCATCTATTTGTGCACTGCACTGCAGTAG--ACTAAAATATGGCaatacatttgaaatttaaacGTGAA---AGAACTGCTACTATGCCTgtgtattataataaaataaattgtaattataaatgttaataaacatttaataaaatagaaactataattcatttaa-aatataatttacatgtcatacttctttcttccctatatattttt-ttcatttagcattttaaaatcttttctattacctcatgttttagtttaactttttgaaattctACCCCTTTTACTAACATACAAATTAGTTTACTACACTGAACAACAAAATGTGAACATgaccttactttttaaaaagtaagtagtGACTTTATCTTCCACTTCTTTAGAACATATTATAATTATTTCCATAAATATCTGTTTTCAAATGTACAATCATACTATTTCT-TCAAATAGTTTAGTAACTTCTACTTACACTGAACACTAAATGGTCCAACAATATATTACTAATATGAA

a score=10911
s chr3           151879928 1368 + 160039680 ACAATGGC-AATACCATTACTGTAATCCAGATAGTTCTTCCTTCAAGGCCATTTGTCTCTCCTGAAGGCTACCTCCCT-------CAACCTCATGCTTACAGGATTCCTGGAATGAGCCTCC----------------------AAAATTTAGCTATTGCACTGCAGAGATGGTGATGATTGACCAACAGGGGGAACTAT-TAAACTCAACAAACCTCATCACTAATGAA-ACCCTGCAAGCTGTCTGACCTTGTATGAAAAGAACACTGTGACTATGGGCCAGtggaatgtcccaggtaaagggacaaatcatccagggccagtttaggccttttgggaaaatagccagttacta-----ttaacctttgaatccgacctaaaattctcatgacaactaggtaagtgcctaggaatgcattgctcagcttggcagaccattagcttccaccaaccctaaagctgagaataacgtacaataagaaagaaaaaagaaaggaagaaa---------------ctaatagaaggatgtccctgttttgcaggagt-----tgatctactgcgacacatgtggtggtagctgaat--------acttattttcttactttattgttagaataaaaaagttcatataaattctcccagtctagagaacttcattcagaataattgaatccatattgccataccttggatattcatatttcctccaaaataaactacttcttgtattttttaaagcagaga-gtcattttgtgt------tgTAAGTA----GAATTTAGAGAAATCCCAACATATCATAGGAAGGTCTCTTAGAAACA----TCCAGTGGTGATGCCAAGCTCCTTGGCCACGCTAATGTGGAAGGTTATGAAGTATGGCGTGTTTTATTGTTGCTCTACAGTCACTTCTTAATAAGATGTCTGGTGGA-GATATTACTGTTG--CCTACCACAAATCTCCAAATGGAACACAGAGAAAATACACTAGAGGTTTGTTTTGTTGTTGTTCTTCTTCTTCTTAGGTGATTCTCATCTCAGGAAGTGCACAGCATACCCCCAGCATGGTCTT-GAATACTGAAAT----------ACCCAGCTTACTGTGCAGA--AAACCCTCATGCTG--TTGTTATGCCACAGTC----CATCACTGGAACAATTAGCATTGGGATCTTAAAGACCGATTGCCATTTCACATAAACAGCATGTGACACGGATGGTTTTGACAATGTTCATTTAAAAAAACAGCAAGTAGCAAGGTTGAAATGGTTGACAGGTTGACAGCCAGCAGCACTAAATATTTAGCCTCAAGTATCAATC-----ACTGCAGTGACGACATAATTTATTTTAAGAATCACTTAATGTTAAA----AAAATGAAATGAAACGCTTATATAATGTCCCTTAAAGTAGGCTAATCACCGGAGAATTTTCATTTATCATAGTATTGTAggacta
s HiC_scaffold_1 138540769 1349 + 233722169 ATGATGGCTAATAACACGCATATGCTTCAGGGACTTCTTAATTAGTTAAAACATCTCTTTCTTTAAGAATACTTTCCTGCCTACAAAGCCTCGTTTTTGTCAGATCTTAGGAATGAGCTTTCCTAGATCTCTGGGACATGAAACAATATTTGAC-----CTCTGAACACAGTGTGGAGCTCTGCCAACAGGGCAGCTGACGTTCACTGAAGGAACCACATCTCAATTAAGGATCCTGCTGGCTAACTGACCTTGGCTAAGCAGAATACCATGATTGTGGAGCAAAGGAATGTTGCAGGTCG-GAGCCAAATTATCTCTGGCTACTTTAGGCCCATTAGAAAAAca-ctaataatttaaatttttaactttgtatCC-ACATACCATTCTTACAACAGTTAGGTAAATCTCCTGGAATG-ATTGTTAGGCTTCGCA--TCA--AGCCTCCGGCAACCATAAATTCTAGAA--------GATAGCATCTGAATCCTACTGGAAGCTATTTCCATCTATTCTACTTATTCTATAATTTCC--ACTTCGCTGCAGCCTCCCTTAACTAATACCTCCAccaaagtatttgttgaatgtaTTGACACATGATTTC---CTTTGTGCTTTGGCTATAAAGGTTTAAATACCATCTTTCTCTTCAGATA-TGTCCTTCAGGTACCATGAATCCATGTTCCCAGGACTTGGTCACTCatatttagtttagaaaaaactattt-------tctttaagTCACAGATGTTCCTTAACATCAGCAATATAAATACATTGAATTAGCAGAACCTTCAATAcattatgaaaagat-----aaaaacgGTTGTCTCAAAACAAGCCGAAGCTACCTAAC------AATGT------TTGTAAATT------CACTTTCTTAT-------------CCACTGAGCAGGCTACCTCGAGGCCTCCATTCTGGCTGATTTTGTCATAGCTTTTCAGATGGAGCACAGAGATGA-GCAGCAGAAAATT---------------------------------------------AAGAGTATGACAAATTCCCGTAATGGTCTTTGAATGACGAAATCCACCAAAAAGCACATCTTTATTTACCAACTGAAACCTTTTACTGCATCACCATTCTGTACTCAAGGTAATTTTGAAACAG---ACACTAGCATCGCACAGGTCTACT-TAGTACTGGATAAGCAATTCCTAACATGTGTGGTTTTAAGGATGCGTCATTAAAGAGGCAGAAGACACCCAGACAAAAGTGACTGGCAAATTGACAGCCAGCAGCATCAAACACATAACCTAAAGTAGTAGATAGTAGACAGCATTGATGGCA----TTATTTTCAGAGT-ACAAAATCCTATAGTGTAAGAT--AATTAAATCCTGGTTTAATGTCTATGATGATAGACTAATTAGTGGAGAATT---ATGTATAAAAGTATTCTCAGTCTA

a score=31071
s chr3           151883341 1209 + 160039680 CCCatatattcattttt--cttttatttaaataatattatCTCTGTAAACTCTCTTG---TTGGATGTCTCCATGTTAACAGCATAAGATAATATTATCATTACTTCTTACGTACAGAAA---------------------------------CTGT-------TCTCAGAATCTCATTGTA---TATCTTTTTGTATACATATATCTTCCCTAGAATGTGGTGGCAAAAAATACA------------TCTTCTGAAA---AGTTGACGTAGAGTTGGAAGTTTTTGTCTGAATCTCTGCTTATTTCCTTCAGATAATTCCATTAAGTGAACCCCTGAGGTAAAAGATACAGCTGCATTAAGgtttttttgcatgagagagatcttagtagcctagactggccttgaactgcctacctcagtttctcacgttcagggattataggtatgaaccaccacAACAGTGACATCAAGGATTTTGAAAGTGTTA-----TCCAACTGCTCTCCAGAAAGGTTTTAATAGTCTGTT----AGACAACTACTCCTCCTCTTGATAGAACTATTACCATGC--CAGTAAAATTAATTTAATTGATGAAAAACTAAGTAATTATACCTAATTGGATAGACTACTCTTTGGTGGAAAATGA--CAGTGCTTGCAAAATAACCATGTTTGGACCTCAACGTTTT---GTCAGTTGGTTAGTTTGTTTTTGTTCGATTTTCAGAGAACATAGTTGAATTAAGAGACTGGCAACCTATTTGTGTCAAC-AATAAGTATTTGCGTACAACAA-CCTTTGTGCAGCTTTCTGGCTAAAGCAACTTGCTAACAAGATGGAGAAATATACACTTCTTCAGATGTCTGTCAGAGTTCTCCCCCAGCCCTCTCAAGTGTTGCAATTCACTTCGTTTTGCCAAAATCAGCTCATTCTTCAACAACTGTTTTTAATTAGCTATGGTTGGGATAGCGTTTGCATTTTGCCCACCCACCCCCCAATTT-AGAAACACAAATTTCCAAAACAATTACCTATTAAGCTGAACATCTTTGGCTTTTACTAAGCCTGGAGGTGATTTTATTTTTCAG-TCTGTGTTTATTTTGGAAAATTTGTAAATCCATTTAGTTCTGTCTG-GGATCGGATAGCAGAATAAACAGAGGTGCCACTTTCGACAGAACAGTTGTTAGAATCCTGCTCACTCCTTTGGCCATTCTAGTTGGCTTTAACTTTCTGTAGTGCTACTGCAGAAAACATGGAAGTTTACTGAACTTATTCA-ATAATTTTAAAAT
s HiC_scaffold_1 138542453 1156 + 233722169 CCTACAcgttcatctttgacttttaatttaaaacagcTA-CTATGTTCACTTTCTTTGGTCTGATTCTTTCTGCTTTAAcaacaaatta-aatattataattattctttttgtcaagaaaagaattttcagaaCATAACTGTATGGTATTTTCCTGTATAGTTTTTTCAGTATCACATTGCAATGTATTTTCCTATATAAATGTgtcttttaataaaacttttctttaaaaatataaaaactagtGTTTTTGTTGATAGTTAGTCGACATATAG---ACACTTTTTACCTGTACCTCTGATTATTTCTTT-ACATGGTtctgtaaaacaaaacacagaggcAAAA--------------------------------------------------------------------------------------------CTTGTACATATG-------------------TGAAGAATTTTGAGAGTATTAACAAATTGAATTGCCCTCCAGAACATTTTtagctatttcttctctgtgttgTTTCTGTTCCCCATACCAGCACTATTTTCCTACttcagtaaattt--ttt------taaaaaaataagtaattacaTCTAAGTAAGTAAGCCAGtccttgaagaaaaaagaaacagtgctT----AGTAACATCTTTTgagcagaaatatttttttgtttgttgattggttgacttctatttgtatttctgagaAAATGATTGCCTTAAAAGGCCACTTGTATGCTTGTCTCAGGGAATAGCCTTCTGGATACTACTATCCTCCAAGAAGTTGTCTGGCAAAAGTAAAATGCccacaaaatgaagaaatgtacACTTCTTTGGATGTCTG----AGTTCCGCACCAGCCATCTCAAGTGTTGCAATTCATCTTGTCTTGCCAAAGTCAGCTCATTC---ACCAACTGTTTTTAATTAGCTATGGTTAAGATGGC-TTTGCATTCTGCACTCCCCCCTCCTCATTTCAGAAACATAAATTTCCAAAACAATTACCTATTAGGCTGGAAGTCTCATGCTTTTGCTGTGCCTCAGGGTGATTTTGTTTTTTCGCTTTGTGCTTATTTTGGAAAGTTAATAAATCCATTTAGCTCTGTGTGAAGATCAGATAGCCAAATAAACGTAAGTGCCATTTTTGATGGAATAGTTATTAAAATACTGTACATTCTTTTGGCCATTCTACTTGGTCTACTACTTCTTTAGTACTA-TACAGGAAACATATAAAATTACTGATTCTAGTCacattattcaaaaat

a score=83841
s chr3           151891202 3870 + 160039680 [encoded data, 4253 characters]
s HiC_scaffold_1 138549340 4081 + 233722169 [encoded data, 4253 characters]

a score=15487
s chr3           151896203 446 + 160039680 GGGGAAAGGGAGAGAATATGTCAAGTGAGATCTTGTTTTCTCTGACTTGGGCAGCATAATTAATAGTTCAACATGACCCTGTACAGGATAAGGTTCAAATGGT-----CCAAAGCATGTGGTAGAACACCAGCCATCTT-CCAGATCAGCTAC--AATGAGCAGGATTCGCTTGAAACCAGACTTTTGTTTTTAAAAAGTGTGTAGCTGGTACTTTCCAAGTCTAAGAAACTTCTCTGCTATTTTTTCTGGGAAATCTTGTCTTTCCAAAACACCACAAACCACTTCTAGGCCTTCGTAACTGTAGAGAAGTGATGCCAAGTGAGTGTTG-GATTCATAGTGTATAAACCCAAGATAACAATCACAGCAGGGCAGGCGCATGC-AGTGTCAGCATGCTTTCTCAG-TGATTACCAAGAATGAAAACCATTAGAGACACAAGGGCAGCCCGTTTTTCC
s HiC_scaffold_1 138558977 443 + 233722169 gggggaggaagaagagggtgTAATGCGAGGTCTTGTTTGCTTTGACTCTGACAGAGTAATTGATCCTATGATATGACTTT-CCCGGGATGAGGTTCAAGTAGTAGAATCCACAGCATGAGATAAAATAACAGCCATCTTTCCAGGTTGGCTGCTTAAGTAAAAAGCATCACTAAGaaccaggaa---------aaaaaacattTGGCTAGTGCTTTCCACATCTACGACTCACATC-GCtatattttctggaaaatattgCCCTTC-AAGAGACCACAAACCACTTCTAGGCCTTCATAATTATAGGGAAATTATGTCAACTAAGCTTTGAaattcattgtatataaataaaagatgataaTCACAGCAGGGCAACCACACACTACAGTCAACATACTTACTCAATTGATTACCAAGACAGAGCTCTGCTGGAG--GCAAGGCCTTCTCCTTTCTCC

a score=15871
s chr3           151901550 1720 + 160039680 GAAGTCTCCATATTTTAACCATATATTTCATTTAGAACGTAATTCCTTT-TTTTCTTATCTAGACTCAATAAA--CATCTTACATTATCTCCATATA------ATATATAATATCAATGTGCATGACAAGGAGCTGATTTTCTTTAGCCAGAGTTTGGAAAATGTCGTAACATTATAAGCAAATAAATTTACTGTGATGAGAAAGAGACAGCACTGAATTCTCCTCCTGGGGTTGGAAA----CCTGGTATTGTTTAACTGAAGCCATAAAGCAGAAAGATCTGTGTGATTAA----CTCTTAGTAGTATGTGTCACTGAAAACAGAGGCTtagatagatagatagatagatagatagatagatagatagatagatagataggcacatagatacatagatacatagatagacatagatagatacatagatacattagatagatgcatgcatacaaagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatcaatagataAAAACAAACAAGAAACAGCTGGGAAGCCCTTTCCCAT----AAGTCTTGTGTAAGTGCTGAGTGACAGGCACACAAAACTGTGCCAATGTGCAAGAGACCAGCCCTCATCAATTATACATGCAAAA--------------TTCAGCTGCATATACTTTCC------------AAGCTTCAAA-----------------TGGACCAACAAA-ACTGTTAAACAT-TTAAAGGGAG-----------------------------------------CTCTTCTCTCTAGAGAAA-------ACCCCCACGGA---TGGTGAGA-TGAGCCTCTAGACT-AGACGTCACTGCTTAGGAAGGTACGG-----AGGGGTCTGTCGTAGATAAGCAGCTCCAGCCTGCAAAGGTACAGAAGGCAGTGAAGACAGGCATGACCAAGCATTTAAAACGACTCAGATCTTCCTGCGTCTGCTCAAGCATTTAGATTCTTTATAAGATCCCAAGAGACCAAGAATTTGGATTTTTTTTTCCACCACACCTAATAGAAAACAGTGG-AAAGGAAGATTTAAAAAAAAAAATCCTTTCGCCTTTTATGAGACTTTATGGTAAGCCAAAACAAAAACCAGACCACAGACAGATGAGCAGTGCATTTCTGAACATGATGGTTTTTACAGAAAGGAAGGCGC------------------------------CAAC---CTCCGCTCCAGTGTGTCTCGGG-ATGTTTGGATAAACTCGAGAACTGTGTAGCATGCATCTACCACATACCGGCCTCTCTGCTAATTGCCA-------AGTATTCATCAGCTTTC-TTTGAGGAAACCAC-ACTTCTGTCACTGTTAGAATTTTCTAGAGAGATCGCTGAAGGTTCAAAAGTGAGGCCTGAGGGTGTGAGGGGTGAGTCTC-AGCCATGCGTTCC-------------------TCTTAGTCGGACCTGCCCATCTGGGAAAGTTTCTCCCATTGGC-TCAGAGGAGATCATGGTCCTCGTTCAAGGCCTTGTAGCAGCAGTAGGTGTAGAAAGACAACAGGCTGA-GCTCTCTATACATGGACGGATGGCAGACGTCCCTTCCTG---CAGATACCACAGCTCTGAATGC-CCAGCTTCTAACTATCCAACTACGTGAAACCTCACGTCTGAACCCTTACAGTTCAGTTCTTCATT-----ATTCGGAGTG-TTTACTTAGCTGTCAGGCTTCCAATCTGCTTCCCTTCAACATTCT---CTCTGTAAGTCTAGGGCACTGTCTCAGAGAGACAGACTCCCTTCACTTCCATATAAAATAAGTCCCTTCGTCTCCAGTTCTTTTT-------------AACACACGGTGTCCCTGCATATGTA
s HiC_scaffold_1 138562635 1639 + 233722169 GAACTTTCTGTGTTTTATCCAGATACTTGACTTAGAAAGAAATTCTACCACTTTCTTATCTAGACTTCACCAAGTCCTCTGGTATTATCTCTACATCTTTCCCCTGTTCAATAAAAGCATGCAT-ACAAAAAGGACCTATTCTTCAGCAAGAATTACAAAAACATCATGGCCTCATATCCAAAAGAAAAGCTTGTACTGAAAAAAACATTATGATGAATTCTCTATTTAGTGTTGGCAAAATCTCTAGTGTT--TTAGCTGAAGCCATAAAGCAAGCAGAAACGTATGATGAATAGTCTCCTCGATCTATTTGTCACTAAAGACAGAGGCTTTCATA----------------------------------------------------------------------------------------------------ATAAATG---------------------------------------------------------------------------------------------------ACAAGAAA----------GCTCTTTCCCATTATAAAGTATTACATAAGTACTAA----CAATAACATAAAACTATGCCAAATTTCAATATAACAACCCTTAtgaattatataaacaaaaaaatgaagatcAAGCACAGTTAGCCACACTTTtctagatttctcaaaaacttcaaaagaactaggaaaaaaagTGGACTCACAAAGATTTTTACACACgttaaaaaaagaatcttaaaataaCACCCTTCGAGGAGGGTTTCTATAAGGTTTTTTGGTTCTAGAGAAACCAAAAGACTCTGCCAGAAAGTGGTGAGAGTCAGGCTCTGGGTTTAGGCTTTAGGG--TAGGAAGATGGAGCCCCCAGGGG--------AGATGATCAGAGAAACCCTCCAATGGATCATTAG------------------CCCAAGTGTTTGTAGTGTTCCAGAACCTTCTATATCTGCTCAACCACTTAGATTCTTTATGAGGCCCTACAAGAGCAAAGACTTAGA----TTCTTCCAGCTCTTCTAATAGAAAGTAGTGGAAAAGGGAATTttttaatagaatatttttttcttttttatgagctCTAACCGTCAGTGGAAAC-----------------TAGACAAACTGTCTGTTTCTGAACACAACTATTTTTCCAGAAAGGAAGGTACTTAGCTGTCAGAATTTGGGAATAAAATGTGCAACCAGCTACTCTCCAACATTCTGCAAACATATATGTATTCATTGAAGGGCTATTTACTAAGCATGTAACATGGACCAGATGCTGTGTTAATCACTAGTGACACAGTGCTAAACAACCTTCATTTAATGATGCCTCTTTTTCTGCCACAGTCGCCATTTTCTGCAGAGAATA-TCAAGATTC-AGAGTTTAGTCTTAACCTACAAGAACTGAGTCCCAAGCTCCCTGCTCCTACTGAGTGCCGAGAAGGGTCTTAGAGTCCCTTACTCCCCT---CAAGTTGGTCTTAGGGTCACCAAGGGAAGTCATTCTCTTTATTTCAGGCACAG-AGGAATTCTGGGTAAAGGAAGATCAAGTGCTTACTCATTCTGCAAGTTAACAAACTTCAAATAACCCCTCCTACATCAAGTCACCCAGGGCTGTCTACTCCAACATCGCATAAACAGAC-----AAAACTTCACATCTGAATTATTGCAGCTCATTTTTCCATTTCCACATCCAGGGTGCTTTGCTCTAATG--AGGTTTTCAGTCTACTTGCGGTCCACATTCTGTGTTCCACAAGCCCCTGGTGCTGTTTC-------------CCCTATTCTTCC-CATGGGACAAG-----TGGTCACTGGTTCTTCTCTTTCATAACACTGAATATAAGGTGTAATTGCATATATA

a score=30039
s chr3           151908763 1140 + 160039680 ACTGCgatttctcaacatgatggcagtgacatttgggaccaggtaaggtaattcctgtcctggaggatggtggttctgtgtgctatatgatgtttaaaaaataaatcccaggcctctatacagtaagttcctcttacagc---------ccactgccatc--ctgcatctaccagtagtgataccccaaaatgtccctaacagttgcagtggtacactggggcaagtgagagcaaaaaatccctcctctgtgaagaactgttgTTCTGCAGAACA-CAAATCACAGGCATATGGTTCATGTTAAGTCATGTCATGAGTGCAACAAGCCTGGGGCACCACTTACAAGTCTAAGAATCCTGGTTCTCATTGTGTGTTGTTTTTTATTGAA-CAGTTTAACACCATCAAATCACAGGTACATTGAATTCTACTATCTGGT---TGACACCCACACCAACTTTTCCTAAATG--------AGTTACTCAACTTTCCCAATAATAATCTTGCAAAATGTCCACTCTGCTTGTGACTATGTTGTTTGAGATCTAT-TCTTGGGA-TATAGAGTATTTTACAGAAGTGTCCTTTAGAGAAAAACCAAACATGCATAACAAATTAAA---CTCGGCAAGAACTTGAGTGGTGAGTAAACA-------GAGCAGAAGACTCCACCCATCAGAGCCGGAATTGCAGATCCCACAGTACTGTGGACCTAGTGTAGAAAAGTGAAA---CTCATCAATAACTGCTCTTATCAGATCTGATT-GTGCAGCCTCTAGCTTACAGAGTTTCATGC-ACAGTTCTAACTACAGTTCAGCAGGAGCCAGACCACACTGCTGAGGCATTTAGCTGTGCGTAAAGAGAAACCAGGAGATATTTTGCCAGGCCAGGCCAGAACCACACACCCAAAGA-GGCCAATCAGACCAAAA-----GTGTGGAAATGGGGTTTTTGCTATCTCTGTATTTGCTGGCACTGAGTTCTGATCTTGCCATGTCTTTACTCACAC--TTGAGATTATGAAAGTTTAGACTCTTGTGGGATTCTAGAGACATCACTCATACTTTGGGCATCTGGTATGTGGGGCCACTGAGCAA-ATTCTGTGGCAACTGTGTCCCAATTATCCTTAGTGGTAATAGACTTTAGGATTTGGAAGGAACAGCTACAG------AGGACTTTTTTTTTT
s HiC_scaffold_1 138584308 1150 + 233722169 ACTAGGGTTTCTCAACTGGCCCATATTGACATTTTGAGTCGTGTAA------TTTTAGCGTGG--------GATTCTGTGCACTGTAGGATGTT-AAGCAATA--TCCCCAGCCTCTTCTCACTGC-TGCATCTTGCATCATGTAGCTGTCACCACCATCTCCCACCCCCACCAGCTGTCATAATCAAACCTGTTCCCAGACACTGCAGTGGTTC-CCAGGGCTTATGAGGACTCATATCACCTCCTA-ATCAAGAACTACCGCTCTAAGGGACATCAAACTGTGGGCATGTGATTTATCCTAAATAACATCATGGATGTAAGAGGTCTGCGGC-TCACTTGAAAGTTTAAGATTTGCAGCT----TTACGTGCT--TCTTAGTTGAAGCAGTTTAATGTCATCAAACCACAG--ACATTAAATTTTACTACCTAGTCAATAATATCCACACTAATGTTTTCTAAGTGTCCCTTGGAATTATCTAGGATTCCAAAT--TAA-CTTAGAAAATATTCACTTTCctactgaaaataatatttgagtCCTATATCATGGGAATACAGAGTACTTAACAAAAGATTCCATTTAA--AAGACTACACAAATGTAAcaaattaaaattctctttaa-----taaGCAGTAAGTAAACACCAGCATAGGCGACTGGCCACACCCACCAGGGCAGTAATT--AGATACCAAAGGACTGTGGAACTTGACAAGAAATAACCAAGGTCCCCTCAATACGCCCTTTCATCAGATTCAATTCACATGGCCTCAGACGTGCGGAGTTTCACCCCAAAACTTTAAATGCAGGTCAGCAAGAGCCAAACCGCACAACTGAAACACTGAACTTCACGAAAAGAGAAACTGGAAGAAGAACTGCCAGCTCAGAGCAGACCCACGCTTGTGAGGACGGCCAACCCGGTCAGAAAGTCAGCGTGGAAACAGGGTTTTCAGCATTTCTACATTTGCTGGCATTGGTTTCTGATCTTGCCAAATCTTTGGTCACACGTTTAAGCTCTTGAAAACTTAGACTCCTGTGGGATCTTGGATTC-CCATTCATACATTGCTAGCCTGTTATTTGGAGCAACTGAGGAATACTCCACGGATCCT---TCACAGTTAT-CTGAATGGTGATAGACATTAGAATTCGAAAGCAACAGCCACAgataaaaaaggtttttttttct

a score=9340
s chr3           151931425 236 + 160039680 AAAACTCTGCTTCAACTGGTCATCTTT-CAAATGAATGTGGTTGCAGAATTGAGAATAAAAGACTAAAGTTTGCTCTGTGACCCAAATATCTAGACAGCTTGGATTGGTTCTAGGGACAGGTTTTAAATAATTTACTTGGAGACCCATGTCAAAGGAGACCAGGCATATCTGTTATAAGTCCAATTCATATTTCTTCTACATGAACTTAGAGAGGCCTAAAGAATACCTTTTAATAT
s HiC_scaffold_1 138599116 229 + 233722169 AAAACTTGGTTTCAGCTGGTCATCTTTTCAAATGAATGTGATTTCAGAACTACCAACAAAAGAGTAATGTTTAGCCAGTAATCTAAAGATCTGAGCAGTATGGGCTGGTTCCAGGGACAAGTTTTAATTAACTCACTCAGAGTTCCCTGCCTAAGATGACTCG-------TGTTATGAATACAACCTGACTTCTTGTTAGATGAAGCCAGAT-GGCTTAAGGAATGCCTTTTGCTGT

a score=22172
s chr3           151938173 1002 + 160039680 CTGATTATTTTCTCTC-ACTATACATTAACTTTTTATGTTG-----------------------GCACCCCGAAACATGCACTTTGTTTGGCACAATGTAAAGA-ATGGCTCCTATTTTCC-TCATTCTCGCAGCTGAAGACTTA---AAGACCCAACAACTAATAGAGATTTATTTTTACAGTGACCAATTGATGACTCACATTAATGTCACTGACATCATCTAAATAATTTTAGGTGTGTGTATAAGTCACATTGTTTCAACCTAATAGTGTCACAAACTATTTGAAGGAAAAATATAATTTACATTTGTTTCTATCAGA--------------------------------------------------------ATTCCTCAAAACAATCACAGCAGATATTT---------------------------TACATTT------ACTCTAATAAATTTTGAAAGT-TCAAACTAGTAGAAGAATCTTTCCACTGTTTCTTTTAGGTTCAGAATAGTCTATTTCTA-------GATCCTATGGGTGTGTCCTA--------AGAAGTCCATGTTTATCACGGTTTACAAACATGCTGTTCTCATTTGTCCATCACACCTAGAAGAATGTGGTGAGAGGCACACCACATACAGCACTTCTCCATTCAGACTTTCTATTAAAGGAATCATTAA-----GCTGATAAGATACCAC---AGTGAGTCCAC-----TGACTCTAAGCCATTAGTTTCATTTCAAGGACACAT-----TCTAGAAATTTTCCTGAGATTGAAACCACACTCATCA--------------------------------------AAATGAAAACCACATTTATTTGTCGCAATTCTTTCTGCTCTAGTTCTTTCAAGAATCTTCAAAGAAAACTAAAATGTGGGGGTTTCCCCAGCTCTTGTGCTGATGATGTCAAAGCTTTAAGACCTAAATCATGAGAGAAGCAGGAGGAGGGATCACAGCAGGAGGAGCACTCCCCAATGCCTCCACTATCCCTGGAGGTCAGCTTTCTCCCCATGGTCTATGCATTGTATTTCTAGCCCACAATGCATTTTGCCTGCAAAAAATCACACTTAAAA---ACGTAAAAGACAGTGAGAATCATTGTCTTCGCCAACAGCCCAGTATTATATTTTTATAGATGAGTATT
s HiC_scaffold_1 138600321 1157 + 233722169 CTGGCTATTTTCCCTTTACAATGTACCGATTTCCCATTTTGTGTGTTTAATGCTTAGCACCAAAGCACTTCG---TGTGTAGTTTGACCAATATTATGTAAAAATATGACCATTACTTTCCATCATTCTGAATATCATAATCTTATTTGTGCACCAACTAATAATAGAG-CTGGTTTTCATGGTGACTATATGTTGACTCATATTTATATtgccaatatattttaaaaatttttagatggACACCTAAATCATATTTTTTCAATCTAATAGCTTTACAActaatttggagaaaata-ataatttacatGTATTACTGTCATATTTCAGCTCAGTAAATCTTGCCTATACTTcattttatgttaattatctCACACCATATTCTTAATAACtttcctaatatatatatatatatatatatatatatatatatatatatattcttgtagACACTGCTAAATTTGGAAAGCCTAAAACTAGTGGTAGAATTTTGCCATTGTTTACCTTAGAGTCAA-----TCCATTTATACATGATAGATGCTGTGGGTATAGTCTATTTATCCTACAGATACAcattcatataattttataaa---acccAACACATTTATCCCTGATATCTGTAAGGGTGTGGCaaaaaatacac-atacagaaAATTTATGCATTCAAGCTTTCAATAAAAGAATGTATTAATACAAGCTGATATGAGATGATTTTAGTGAATCTACACTTGTAACAATACATCA--AGCTCCATTTAAACAATACATACTGTGCTAGAAATTTTCCTAAGATTGAAACCAAGTTCATGAGTCTACAATCTGCAAAATTTCTGTCTACTTCTTTTGGAAAATTAGAACCACATTTGTTTGTTGTCATTCTTTCTGCTCTAGTTCTTCCAAGACTGTTCAAAGAAACCTAAAAT-TTGGGTTTTTCCCAGTTCTTTTGCTGAATGTCTCATAATTCTAGAACCTACTTCATTAAGGCAAAACAACTAAGAATTAC-------------TTATgcagtttcttcattttccttgaaatttagttttctttctacAGTTTCTGCTCTATATTTCTACTCCAGAATGTATTTTCCTtgacaaaaataatgtttaaaagacAGTTGAAAAACCCTGATTTTTCTACTTCTTGCaaac--------attatattttcatatatgaatatt

a score=21467
s chr3           151941619 836 + 160039680 CAGATTCTTTCTAGTGACTGTCAACTTTTTAAGTCTAGAAGGAGAGGTGCTTTGTGTTTAAGATCTGTACTAGGCTAAAATAGCTTTTACAATGTAGTTGGGCAGATAGTTTAT-------CTTCTGTGACATCTCAGAGTGCCTGAGAGAGGGAGATC----AGTGGGAAGG-CAGTTGAAACTAAGGACATCTGGTTTCACTGCTCCAGCTTGGGCCACAGAAGACAGCCACGCTCTGTCTCAGTACGAC--GCCGT--CCTTCCA--GTGTTCTCAGACTTTTCTCAGAACCCAACACTCTGGAACTTAAAGTCCAAACTCTAAATCCTTGTGGAGAATCCCAGGCTTCAAACAAAATGCCTAAGTACTATTCTGCTGTAGTCAAGCTGTTTCCAATCTACCGCTTTAACAAACAACATTCCTTTTATGTGGTGTTGATGAAGGGCCAGACTCTGTGCTCCTAAGCACTGTTTTTGCAATATACAAGATCAGGTTCAATAATGAGAAGGGATTTCTCTTGC-TTTGTCATCAATAGGGGTACTTTGCCTTC-ACTTGACTTCCTAAACCTCTTCATTTTTTTATACCAGTTTGGT--ATTTATTCTACTCAAGACACCCCAGTATACTATAGGGAAAGAAGCAGTGAACGGAAAGCCAAGAGTCATGA-----------CCTAAACCTGCTCATG------------CATTGACTACAAGTGTg----------------------gagagg----------------------------------aggaatggggagacta-----gaagacaaggag-----ataggacaagaaggaaaaaggagaaagagagggagggagggaagaagaacagaaagaagaaaagggaagggaaacagaaC-------AAAAGTAGAGCTATCTCACTGAAGCTGTCTCCTGAACACA
s HiC_scaffold_1 138611137 946 + 233722169 CATACTATTTATTTTAGCTGTTAATTTGTTAAACCTGAAAGGGAATAAGTTTTGTGTTTCAGAGTTATGCTGaactaaaattgtttttctagcATAATTTAGCAGGCAGTTTATGCTGTCTCTTTTGTAACACCTCAGATTGCCTGACAGAGTGTTCTCTCAGAGTCAAAAGGGAAGTTGGAAATAAAGAGATCTGGCCTCACTGAGGCCCGCTGGCCAGTGCAATACA-CCAT-CTCAGCTTTAGTGTGACTTACCATGGCCTCCCAATGTGTTCCAAGAGTGTCCTC-GAGCCCAGTTCTCTGGAACTTACATTGAAAACACTAAATCTTTGTGGATAACCCACAGCTTCAAACAAAATTTGTAA-CACTGTTAAGCTCAGGAGAAGCTGTTTCTAATCTAGTACTTTCACAAACAACATTCCTTTCATGTGGTGTTGGTGAAGTACCAGATCCTGTACTTTTGAGTACTGTTTTTGCAATGGATGAGATCAGATTCTGTGGTGAAGGAAGGCTTCTTTTACTTTTGTCATTATTGAAGATATTTTTGCTTCaaccaaactttttaaaatttttatcattctaACAACATCCAGGTCACTCTATCCTACTCA----CCTCCAATGTGATATAGGAAGAAACACATTGCATTAAAACTTATGAGCAGTGAATTCTTGTTCTTCTAAGCACCTCTATGACCTTGAAGAGTCTCTGATTCTACCTGTGACTCTTTTCTCCATGTTAAACTGAGAGATCAGACTAGATCCTTGCTTTTAAGTGGTTATCCTGGCATTGCAGAAACGGGCTCTGAAAACAGCAAGTGTCTtctgaaaagaaagggaaaaggaaagattgaagaagaggaggaagaggatgagaaggaaagaaaggtagaGGAAACATAACTACTGAAAGAAGTAACATAATATAGCTGCAGAAAAACACTGAACACA

a score=29348
s chr3           151945494 1447 + 160039680 AACCTTCTAGCAAAACTGTGGGGAAATAAGCAAGTCTTTGCCTCCTAAAAAACATTGAACGGGAGCCATTCAGCACCAAAAGG----------CAACGAAGTGCCATGAGATTGGCCTGGGTTAGCTTACCACGATATAGAAT----------CACACAACCCTGGAAAAAAATCAAGTGGAGCCGCCCTTTCCATGTGAAGCACCGAAGACCCATTCCATCTCTACCAAGTCCCACGGTGGTGAACA-TAAGTAGGAAAGACCTCTGCTCGGTAACAGACGTGACATC-CTGCACTTTCTCAACCTGAAGTGTGTTTTGTGTGCTTAGGTG--GGAAAAGTGACCGATCAGCATCTTCTGCAACTATCCCCCAGGCTTGTACTTCAACTATTTAAGATTTGATCC-CTCTTACAGGCAATAGCAAC----------CTTGTTCAAGGTTCCCAGCAGAAAATT------------ACAAGCGTGAAAGTCAAAAAGCCAAAATAAATTTCTCAAAAAGAAACAAATGCTTCACTGCAGGAAA-GAGAGGACGGGGAGAAGTTGGGAGTTAAAATATAATTTAAAAGATTGGCCCATGTGAAACTCTGCCAAATTTCAAAGAATTGCTTATTCTGCCCT----ATGCAGTCCAGGAGAGAAGAAACCCAGGAAGCTA------------TCCAA----------ATAAAATACATTTGACACAGTGCTCATCTGTGTGAAGGCATTCTAACATGTGAGGAAGGGCTGGAAGGCAGAGGAGATCCTAAAACATGATAAATCACATT---------TGTTTGAAAGGCATCCTGGC-AGTGCATCCCTGTGGCCTGCTGTTTCAGTTCTCTCAATCTCTGCAGTCCGCTGAAGGGAGATTTCCAGGCACCACACTTGACAATGGCTACCAACTGGCCGTGTGGGGAGAATGAA----GTCTGCGCCT-----CACACACGTTAGTGAGGCTCAGCGATTTGGTTGACTCTATCAGATATCTTGGTCAGAAGGAGAAACTGGGAAATCAGACACTTGTTTGGTTTGCTCTGTAGAATGT----------TTAGATAGACTTTGA-----ACTTGTTCCACACCTCCTGTTTTATTAAGAAATTGCCTAAATTGCCTTGGTCTGTAACACACAGCAAGCAAGTGACA------GTTAACCAATTAATCTAT-ACCACCATGGTTCTAGAACACTTATTTTATGTAT-TGTGCCAGTTGAAAATATATGTCTCTCTCATCCATTCATACAAAAGCAA--------CACTGTGTCTAACA---AGACACCAATGTGCTC---ACATGCTGAATAAACAAAAATGT------------AGACAT-ATTTTGCCTCACTTCAAATACTACATGCCATGAGCTTTCTCCCATTTGTCTATGTCTGTTTATGATTCCCCATCTACCTGAAATACA-TGGACTCAGTTCTCTGCCGAGCCAGTTCCCCTCTAAACAAACTCCAAGGTCACC-TTTAGCCCCTCTTGGAGGCCTTCTCTAAGCAGCCTATGAACGCCATCCAGTTTTG--CTCCCTCAGCCTTCCC
s HiC_scaffold_1 138617651 1519 + 233722169 AATCTTATAGCAAAGCT-TGGGGAAACAGTTACCTCTCAGCCAGCTGCAAATT-TTCAGCAACAATTATTAATTACCtaaaaagaataactaaaaacaGGATGTCATGAAATTAGCCTAGATTAGTTTGCAACAATAGTTGATGTATGGTAGCCATACA-CCTTCAGAAACCatcaaagtaaacctttcttcccaTGTGCAATAGTGAAG-----TTCTAATACTAACACCATTTGCAGTGATAAACAGTCATTGTAAAAGGTTGTCATTTACTAACAGTGACCACATCACTGCTCTTTC----ACTTAATTGTATTTTATGTGTTTCAGTGTAAGAAAAATCACAGACCAACCTGCCCTGAAAATGTCACCCGG--CTATCCCCCATGACTCTGAGCTTTACCCTTCTATCAGAGGCAGTCGTGACGTGATCAGCCTTTGTTCAAGGTTCCCAGGAGGGATTTTCTTCACAGTTTACAAACATGAGACTCAGAAAGCCACAA-GAGTTTGTCAAGAAGCCAT-------------CAGGAAGCAAGGAAAAGAGGAGCAGCTAAGAGCTAAAATGTAG----GAAAATCTGCACATGTGAAGCGATGCCAGATTTCAAAGAACC-CTCACTCTGCCCTTCTCATGTACTCCag---agaagcaaagcagaaagccaAATGGGCTTAACCCCAATTCACATGGGATAAAATATGTTTTACAGAGCCTTCATCTGTGTGAAGGTATTCTGATATTTGAGGAAGGAT--GCAGGTGAAAGAA-----AACACATGATAAATCAGATTCTTCACACACATTTGAAAGCCACCCTAGCAAAGGTTTCGTTGCAACACAC--TTTCAGT--CACTATTCTTTGCAATACTGTGAGGCGAAGTTTCCAGGCAAACTGCCTCATGGTGGCTACCAACAGGCCCTCTGGGAGTGATGGACAGTGTCTCTGTTTGCTTCCACACACATGATCCAGGCTAGCTGGTTTGATTAATTTTGTCAGACTTCTCAGTCAAAAAGCGAAACCATGGAGTC---TccttgttgattttgtattggaGAACGTCAGGCTAACCTAAGTTGAACCTTAAAATCCACCTATTGCAACCTGTCTATTTTGCCAG----------AAATTAACTTGCCCCATGTCACATAGCCAATTAGTGGTAAAATTCGGCAACCATTTACAATAGAACCATCGTAGTTCTATCATATTTATTTGATGTACGTGTgttatttga----atgtttttcttttgttaatttgtATAAAACTGATTAGTATGTAGTATATATAAAGCTTAAATAAGACTTTGTTCTTGGCattttgaataaacaaaatggTGTTTTCAGTTTGAGACATCCTTTTGCTTCTGTTCAAATACT-CATAC---AAGCTCTTTCCTACTTGGCTGCCCTTGCCTGTGGTTTCCCATCTGCCTGGAAAATAGTGGACCCAGGTCTCTGCCTGGCCAATCCCCTTCCAAAGA----TTGAGGTCACTAGTTAGCCCCTCTGGAAAGCTCTCCCTGAGTAGCCCCAAGAAGTCAGCC---TCTGACTTCTCTCTGTGTTCCC

a score=18509
s chr3           151959162 521 + 160039680 AGCCAATGGCTTGTGGATCATCATGCCTAAGTTTTATTGTGACTACTGTGATATGAATCTTACCCATGATTCTCCATCTATGAGGAAGACACACTA-CAGTGGTCAGAAACACAAAGAGAATGTGAAAGACTATTACCAGAAACAGATGGAAGAGCAGGCCCAGAGCCTCACTGACAAAACAACTGCTGCATTTCAACAGGGAAAGATCCCTCCAGCTCTATTCTCTGCTCCTCTGCCTGCAGGGGCCATGATCCCACCTCTCCCCAGTCTCCCGGGTCCTCATCGGCCTGGCATGATGCCTGCACCCTACATGGGAGGCCCTCACATGATGCCAATGATGGGTCCCTCCTCTTCCTGGGATGATACCTGTGGGACCAGCTCCTGGGATGAGACCTCCCATGGGAGGCCACATGCCCATGATGCCCGGGCCTCCAATGATGAGACCTCCCGCCTGCCCTATGATGGTGCCCACCCGGCCTGGCA-TGACCTGGCCAGACAGATAAGAGCAGAA----TCTCTCTTTA
s HiC_scaffold_1 106846519 513 + 233722169 AGCTGATGAACAGTAGAGCAACAAGCCTC--TTTTATTGTGACTATTATCAGACATGCCTCACCTATGATTCTCTATCTATGAAAAAGACCCTGTAACAttggt---aaatgcaaagaaaacctGAAAGACTATTATCAGAAATGGGTGGAAGAACAGGCTCAGATCCTGATTGACGAGGCAGCAACTGCATCTCAACCAGGAAATACACTTCCAACTCTGCTCTCTGTACCTCTTCCTGCAGGGACAATGATCTCTCTTATGTCCTGTTTCCCAGGACCTCATTGCCTTGATATAACGGTGACATCCC-TACGAGGGTCCTTCCCAGGATGCTTGTGATGAA-CCCACCTCTTCCTGGGATGAGGCCAATGGTATC-TCTCCTGGAATGAAGCAGTCCATGGAAGATCACTTATCAACGATCTCTGCTTCCCCGATGACAAGACGCCACTACTG------GGTATCACCCTTAATACCCAGTAGTGAGTTGATGAGACAGGTAGGGATGGAAGgggtctcttttta

a score=10146
s chr3           151972764 253 + 160039680 TATTTGTTACTCTTTAAAGACTTATTGTTGAC-------GGACTCAGAAGTAGATGTTCTCAGTGAGGACAGCCTCTATTTCTTAGCAATCTGTTCCTGATGCTTTTCTTTGGCTT-----------------------------------------------------------------------------------------------CCTTCATTCTCCTGGCCA-AAGCTTACCATATTCTGCAGCCTCCTCCTTGTTTTCTTTAGCACATTGTTTCTTCAGAGGACCATATTGGTGTTTGTGTTG---------------CACAAGATGCTGAATCTTGGGTGGTTTGGGCCTGGGCTTCTTATC
s HiC_scaffold_1  79513385 369 + 233722169 TATTTGTTACT--TAAGCATTTTATTTCTGACTGGACTCAGACTTAGAAGTAGAAGCTCTCAGAGAGGAAAGCCTACGTCTCTTGGCAATTTGTTCCTGGCGTTTTTCTTTAGCTTCCTAAAAAACAGAAGTACAGAAGAAGTCAGACTTTTATTCCAGTGAAAACAGCAAATTAGCCATTCTGGTTTCATGGCCTCCCTTATCTCACTCACCTTCATTCTCTTGGCAAGAAGCTTAGCATATTCTGCAGcctcctctttgtttttcttagtaCGCTGCTTCTTCAGAGCAATACGGCGGCGCTTGTGTTGGAGGACACGCGGAGTAACAAGACGCTGAATCTTAGGGGCTTTAGTCCTGGGTTTCTTACC

a score=17566
s chr3           151973008 372 + 160039680 CTTCTTATCGTCATTGTTTAAGGGCTTTCTGACAACATACTAGCAGACATCATCTTCTTTAGAGAAATCAAAAAAGCTTTTGGATTCTGCTGGTCCTTTTAGGTCCCAGCCAAGGAGGCACAATAGGGTCAGTTAGTCCAGGAATCTTCTTCCTTCTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTCTTGACAATAACCAAGTGGAGAATGCTTAGACTGGCATCCACAATGCAGTCATGGACAGATGTGTGCTTCCTCTCTTCATTTCTCCCTGGTCTCCAACAGGAATGCCCCTTACTCGATAGCAGGCATATTCTGCCATGAGTCAAAACTCCTTGCTTCATGGGAAAACCTTGTTTGTCA-TCCCACCGCTGAGTCAGACCACACAACCCT
s HiC_scaffold_1  79514896 544 + 233722169 CCTTTTACCTTCTTTGTTTAAGGGCTTCCTGACAACATATTGGCGAACATCATCTTCTTTAGAGAGATTGAAAA-GTTTGCGGATTCTGCTTGCTCTTTTGGGCCCCAGGCGCCGAGGCACAGTAGTATCAGTCAATCCAGGAATATCTTTCTCTCCTTAGAAGAGACAAATGTAAACAGAAGTATTTCAGTTCAGTAATTTCCTTTGTAACATTGAAATGATCATTTACAAGGGTACTTGTAAAATACACTGGTTAATATGCAAACACCGTAAAGGAAAAAACACCTGTAAGTCATCAACAAAAACTAAACGTGAAGAGCATAAACCTCAcctttttttacaataaccaAGTTGAGAACGCTCAGATTGGCATCCACAATGCAACCTCGGACAGATTTACGCTTTCTCTCTCCGGTTCTCCTTGGTCTATAACAGGAATGCCCCTTGCTCAGTAGCAAGCGAACTCGGCCATGAGTCAAGACGCCTTGCTTCATAGGGAAACCTTGCTTGTCGTTCCCACCACTGATCCGGACCACATAACCCT

a score=5678
s chr3           151973375 130 + 160039680 ACCCTTCACTTCTCACCTAGAACCTTAGCAGCTCCTTCTGTTGCCATGAACTTCTCACAGAGCATATGAAGGCTACCTT-GTCAT-----TCAGTGAGTTTCCAACAGCTGGTGGCTGGAAAGAAATAACTCAGCT
s HiC_scaffold_1  79515840 136 + 233722169 ACCTTCCACTCTTCTCCTAGAGAGTCAGCAGCAACTTCTGTGGCCATACGCTTCTCATAGAACGTACGAAGTTTACGTTCATCATCCACCTCAATGAGTTTCTGGCAGCCAGTGGCGGGGAAGGAGATGTTCAGCT

a score=20253
s chr3           151977376  995 + 160039680 TTGAACTATAAGCATAGTGAAG-----TATATGCTCTATTTCCTCAAAGGAAATTCACAGTAGATA-----------------AAATCTTTAATATCTCACAGAATGGTGCTCCCTTGCTGACTCTGTTGGGAG----TTGAAG-------------CCAGTGCTTTCCACAAGATTTTCTGAAGC-ACTCCTCTCTGCAACAAGTGATGTCTTCTCAGAGAAGGAC--------------CAATTAGTCTCCA-----TCACTGAGCATTTTCAATATAACAGGGACCATGTT----CCTAAAAAGACATGATGCTG--AATAAGATGG---TACAGCATACCCAAGTTT-CCAGAGAACCCATCGGCTATCAGATCACCATGT-TTGATATGAACAAGGGATCTCTCCCCCAAGAATG-----AATGAATTCTAAGACTATTACTGGAATGAAAAACAATCCATCTAC-----TGAGCAGAAGAGGAAA-GCAGGC-----TTTAGCTGAC-CTGAGCTTCAGAGTCAGACATAATGGCTGTCAGATGGTCTGACAAGCCGCACACGTGAGTCACTTA----GACTCAGCCTCCTGAGTCATTCTTACTGTAACAAGTTGTTCTAGAATGTCATACTTCATAGTTTACTTGAGACTTGTAATGATACTACTGCTCTTGGTTAAAATGTTCAAAGGCTCAGTATTCTAGTCCAAGTATCGCTAAAAAAATTTAGTC-CTTGGAACAAACTATTTAATCAGGTTTTTATCAGGCTGCAGTTTAGTCTAAGTCA--TCCCTAACTCATTTGTTTGTTTGTTTTTGTTTCCTCCCCATTTCCTACTTAAAACATATACAAATATTCCTCTCAGTTTCTTCTTTTGTT------TCTTATGTCCCGGGTTTAACTC-TCCACATCTGGAGTTTCAACAGATACCCCTCTGAAAGGACTCTTTCTTTGACATCACTCATCCTCTCTCTCTAGAGACTGCTGTGG-----TTGCTGCAGAAGGAGCTTGAGCCAGTAGAAACCTGAGCTTGAACTGG-----------CTAGTG----TATGGGGATGTGGCCTTGGAAAGGCAAAACCAGAGACATGTTT
s HiC_scaffold_1 138621852 1044 + 233722169 TTGAATTAtaagaacaattaaaaataatatatggcCTAT------GAAGAAAATTCACAATAACTAGAATAGTACTACATGAAAAATCTTTAAGATACCACATAATA----TTTCTTGAGgattttctggaaaaaatttttaagttgcTCCCATCTTCCACTTTTACCAAAAAACACTTCTGAAGTGACTTCTCTCGGCATGAAAGGATGGCTTCTCAAAGACCTACACCCAACCTCCACTCATTCAATTTTCAAGTATTCACAAAGAATGTACAATACACCAGGCACTGTGTTAGATCCTG----GGTTCGAAGTTGGGAATAAGATGAACATACATCCGACCCATGTTTTCCAGAGACTCCACC---TATC---------TGTATTCATCTAGATAAGGAGTCTCTTCCCCAAGTCTTTTTGTAATAAATTCTAAGACTACTCCTGCCAGAACTAGCAATCCACccaaaaatataactaaaacagaaaaagcaggcCTCACTTTAGCTGACTCTGAACCCCAAAGCCAGGCATAATGGTTGTCAGATGATCTGTCAGGCTAGATGCGTGAATCACTTGGTTTGACTCAGTCTATTGACTCATTCTTACTGTAACAAATCATTCTACACTGCCAT--TTCTCAGTTAACTGTAGCTTCATAGTGATACCACTACTCTTCG------CATTTAAGTTGACAGCATT-GAGTCAAACTATCCCTAAAAAAAGTTAGTCACCTAGAAAACAC--TTCAAT---GTTT---CCAGGCTATCAATTCATCTAAGACATCTCTCTaact------tttgatgatttttttcctcttcttgtcCCTAAGTATAAACACAT--AAACACTCTTCCAAATATATTCTTtggttttctcctctttcttcctggAATAACTTCTTCCATACCTGGAGTTTCAACAACCACCCC------AGG--------------CTCACTCGATCTCGTTCCCTTTGGAGTGGTCCGACACACTCCATCCAGCATTTGCCTGAGTCAAAAGAAACCGGAACCGGAACAGGGAGCCAGCAGCCTGGAGTGGATATTGGGAGGTGGCCTTGGAAGGAT-GAGCTGCAGGCTTGTTT

a score=19788
s chr3           151997029 1275 + 160039680 AAGGAGATGTTAACAAACAATAAAAACAGTACTCTAA------------------AGAAAGCGGTCATCACAGCAAACCCTTCCAATACTAAGAGAATAATGAGAGAATGTGAGCAGTTTTATGGCAAAA-CATTC-ATTGCCATGTAAAACTAATTTTCCTCGGGGAGCTTGTGTCTGCTTTGTTTTGTTGTTCTGTTCTGTGTACTTTTAAGCAAAAGGGTGATGATTGTTGTTACGCTCAGTATTATGCAATGAGAGTGGCCTGACT--CTGGGTCACTTCTCTGTCACTCCCAGGAAACTAAATATGA----CCAACAGGAGGGAAGATGAAGAATTCCAAACAGCAAATTTGCTGTTGACACCATGTGGACATGTTCGTAACGtctgatgggagctttgcacttgaatacttgggaagaagcaacattggcagaaggtagtcttccaacagtgtaagcctactacctccagacctttggaaggagtgaaggactg----------------TAGTCACCATATGGCTG--TTCAGCC------CAGCTAAG-TTTTGTGCTGTGCTGTGACCACCCATAAGCATGACTGgatttctgtgctaaaggaa-caggtactgaccctcctgagaaaagaggggaaaggcagagcatagcttgaaaagttctctgcatcttctcactagttctttcacttgaggctacacacacatgcacacacacacacatacacacaccaagtgcacatatacacacacatatgcacacccagttCCA--GATGTCTTGGCTTCACCCCTTCCTTTATAGCTTCTTCATATTGATTTCACCATCTTGACGGGAACCAAAAAGCAGTTTT------TCTCTGGAACATCGT-CTTCACACCTTTAATTATTGCTGGCCAGCATCCAAAGTACAATTCCCGGCTGTCTGCTCTCCTCCCTCACAGTCCCAGCTTCATTTTGCTTTGGGCTTATTTCC-TTCAGACCAACTCTACTGTTCTCTGA---CTCAAGTCTATTTATTGTTTCTCAAAGAAACTCCCCGCCAAGTTTTATGGCATCCCCTACCTCTTCCAACTTCTTGTCTTAACTGAATCCTGGATGTACCCCAAGTACATAA-CTCCCCTGAAACCCGTGAGATGTGGGATGAAGTTC-CCTACATCCATCAGGCTCAGGTGT-TAGGTCAGCCCTCTTATGGAGT---AATGCTTCCATCCAAAATGCTTGCTCTTCTTCCAGCAAAACAATGTATAATTAATTCTTTAGGG--GGTCACACCTGCCCAATTCCTCCTCACTGCTATCAAGGGGCATCCACCCATCTCTCCA-ATTAACCA
s HiC_scaffold_1 138657870 1187 + 233722169 AAGAGGGAGCTAATTAAAGATAAGAAGAGGAATACAATCTATGGCTGTGGGGAATAAAAAGTGGGTATCACAACAAATCCTACAGATTTAAAATGACTCATGAGACA----------TTTTATGCCAAAAACATTTTATTGGCGTACAAAACGATTTTCCGTCAGAGTGTTccggtgtgttttgttttgt-------------gcactTCTGG-----AGGGCAGCAGCTGTTAGTCTGGTCAGTATTGTGTAACGAGAATGGCTTGAAGGGCTGG-------CTCTGTCAGCCCCAGTGAGATAAACGAGAGGAAATAAAAGGAGGGAGGATG----------------------------GATAGCATAGAGACAATACAGCAGCCTTTGCTGCCAGTCTACCAGGGAATTCCTCGCCGAAAAGCG----TGGAAAGAGATCACCTTCCCACAACGCT-GCCCCTTGTCTCGGGGTCTTTGGGAGGAG--AAGGAGTGACAGTCCAAAGGCAGCCAGCTGCTCTGTGGCTGACTTCAGCCATCCCACGGCAGAGCTTTTGTGCTGCTCTGCTCTTACTCACAGACTTCGCGGGTGATTTGTGTTGTGGCAGGTAGGCACTGGTCATCCCAAGGAAATGGAAGAGAGGCAAG-----------AAACCCCCTTGCATTCTCCCCCTGGCCCTGGCA-----GGCTGCACCCCAAGAC--------------------------------------------TGTGGCCGCTGAACCCCACCAACGT----GCCTCACCCCTCATTTTAGAGTTTCTTCAGACTGATTTCTGCTTTTTCACAGGAACCCACAA-CAGTTTTAATTCATTCTGGGAGCCCAGTGCTTCACACCCTTG-TTGTTCTTGATCATCATCCAAAACCTAATTCCT------------TCCTCTCCCGCAGTCACATCCTCATTCTGCTCTGGCCTTCTTTCCATTCAGACCCATTTTACTACTCTCTTCTCCCTGAActctatttattttatcttcaagAAACTCCTCTTAGAGCTTTGCAAACTCCCTCATCTCTTCCAACTGTTTGCTTTAGCTGAATTCTGGAGGCACCCCAAGTACACAGCCTCCTCTACGGCCTCTCAGGGGCCAACAGCCATCCTCCCGTATGCACCAGGCTTGGGTGTCTGGATCGGCATTTTCCTTGGCCCCAGACGTCGCTGTTCAGatcttcttcccttttcccttc--------------cccgCCCTTTAAGGGCGGTGACCCTCTTATTACCCCTTTTCACCGCTGCCACACAACTACTATCCACCACTCCACATTGACCA

a score=19543
s chr3           152004338 633 + 160039680 aataaaaataacaaacctttttaaat-----------------acattattcaaaatatatgtattttaaaattaaaCTTGGTTTTAAAAAATCTGCTTCAAATTTTAACTTTTGACTAATCATATATGAGTCAAAATGTATGATTTAGTTCTTACCATAATATCCAGATACATGGAAAAGAGATTTCGTGGGGGTTTGCGCACTATTAATTATTGCT-GTTTCCTAATCCT-GTCACCCGCTTGGCATATCCACTGGAGTTCTTAAGTAACGCTAAAGAGGGG-ACTTGCACAATCCCTTTTATGAGCTCACTCTCAATTTTTGGCTCCAAGGAAAAAGCATGAGGTGGTCCAGACTGAAGAATTGTTCCAATGAGACCCATCTGCTGATACCAGCATTACAACGCTAACTTGGATGTCAAGGAGGAAAACAACCAGCGTGTTATGTAATGCCTCTTGTCCTAGACACCAGAGGGGC-TGTGC---TCTTAGCACAGGGCCATCCA-----------------TACTATGCAGGTCACCTTACTGTGTGACAATAGCATTTTGACA-------TTTGTCTAACAGCTCTGTCTAATGTCTACTCTTTTTCACAATAAATTCACgaggaagaaatggagaagggaaaagagaaagaaaggggcaagggaaaatgggaagga
s HiC_scaffold_1 138670690 646 + 233722169 agtaaaaatttaaaatgctattaaatCTCTAAaccaaaatcagaaataatttaaagtacatataatttgaaatg----tttgctgtggcaaa--------aaaataaaagttctaacAAGTCATATATTAGCCAAGATATATGTGTTATCTCTCCTTGTAGTATCCAGG---------GGGAAATTTTGATGGAGTATA---ATGTTTAATTATTGCTTActtcttaatttttatcattCTCTGAGCACATCCACTCAAGGTCTTAAATAACCCTAATGAGCCACATTTATGCAATTCCTTCTATGAGCTCACTCTCATTTTTTGGCTCCCAGGAAAAGGCATGAAGTGGTCCAaagtaaaaaattattcaaattaaaCCCATCTGTTGATACTAACATAATAGAGCTAAGTTGGATGTAAAGGGCAAAAACAATCAGGGTTTTACGTAATATATCTAGTTCTAGAAATAGGAAGGGCATGTGTTCATCTTA--ATTGAACTACTCAGCTTTGTATTCAATGTCCACAATGTGGATTATCCAGTTATATTAAAACCTCACTTTAAAACTACATGTTTGTCTATTGTATTTGTCCAATATCTG-TGTTTTTAACAGTAAGTTCccgaagaagaaa--------ggagaaaaaagagagaagggaaaaggaaaaagggaaaga

a score=30533
s chr3           152004979 1107 + 160039680 aaaggtaagaagagaagaagT-GAAACAGTCTGGGACATGGTTATCACTCT-------AAGCAAACGCCCATTTGAAGTGTCTTCATTTATGATCTTGTTATTCAAAACACACAGAAATTTATTTTCCAAATTTAATAAGATTAAAAATATTGCAGCCCTGGCAATGAACTCAAGCAATATGCCACAAGAACAAAG--CCCAACAT-GGATAGC-----AACCCTTCAGAATCACTCACCTCTTCCTTA-----TTTAAGATAAGAAAGTAATCTCTTCCCATAAAATTTTCCTTCTTCCTTTTCCAGTGTTCCTTTTG--CTGG-CAAGACAGTCTTCCAGAATAAATTCTCCTTTCTGACGTCACTGCTCTGGTGTCTCTTCTTCAGAGCTAATGTGTGCTTCTAATGTGTGCTTTAGCTTAGCCTTGTAGTAAGAAAAGCCACTCTATACCAACCTGGAGAAATCAGGTGT--AAAATGGTCTTATGCTGCTGTTCAGAG---CATCAGAGAG----------ACAGCTAGTCATCACTCGATAGGCATGAGC-CCATACTACAGCAAC------CAGCATCCAGATAGAACTTGGAATTCTAAACTGGCAACGGAATATTTTGTGAATGTGTTTTTAATTTTGGTCAGCAGGACACA---GCATCTCCCTAATGGAGCTCATTTTCTCTGTAACCTATGTGTGGAAACCCAGTTCTATGAAGTAGTCTGATTCATCACTCTTTCTCCCCTTAGCTTTTTTTTTTTTTAATGAAGGAGATGT----TACACATATCCACATACATACTGAATGACCAAAAACTGTGTTCTGGACCTGCCAGATATGAGCATGTTTCAAATTAGCAGAGTTGGCATGAAACA-GTGAGCATGTGGAACATGCTGGCCCCCTGTGACCTAACAATTAAATTAATACAACTTGTCCTGTGGCTACAGAAGTTGGATTGAGTCTGCAGAGCCAGAAATGCAATGGTGGCATAGAACAGGCTCATGTGATC-CAGCTGTTACTAGCAAATAAAGTTATGAAAGATATACCAGAAGGTAGAGCATCGAGAACTTAAACTATTCATATGCCCTAG---GTCTCAGGCCAGCA-------GGTAGAGATGTACTTGCTATGAGCTGCAAGAAAATGCAAGAAAATGG
s HiC_scaffold_1 138672304 1118 + 233722169 aaatgaaaatatgggaGAAGTAGAAACAACTTGAAATGTAGTGAGTGctctttctaaaaaataaagttccAGTTGAAGTGT----ATATGTGATCTCAGCACT-ATTATGCACAGAAGTTTCTTTTCCAa---caataaaactttaaatgtttTCCCTTTGCTAAGGAACTAATGCAagatgtcaaagaaaaaaagatccagCCATCAGATAACTTTCTAGCTCTTAGGAATCA---------TCCTTAAtacatttaaactaaaaaaaggatTTTCTTCCACAAAATGCCCCTCCACCTTTAACCCATTTTTCCCTGAGACTGGACCAGACATTGTTCCaaactgtgttttcctttgtggCA-CAGTTTTCTAGCCTGTTTGTTTCTTACCAAACATGCTCTCCTGAACTGAGTTTTCATTTAGCTTTGTGATGAGAAAAATC-CAGTCTGCCAAACCAAAGAAATCAAATTTCTAAAGTGACATTA-----ATGTTCAAAGGTTCACCAGGTGATGTCATCTTAAAAGTTGATTATCACCCAAGAAGAAtaaatgctaaattttaaaaaatggtcacAGAGTCCAGACTGAGCTTTGAATCCTGACAAAATGAtggcatattttataaatatgtttctaATTTTGGTCAGCAGAACACAAGGGCATCTTAGTAATGAGGCTCATTTTCTCTGTAACCTATATGTGGAAACTCAGTTTTGTGAAATACTCTGATTCATCAGTTCTTTTTCCCCCAGC---ATTTTttgtaaatgaaagaaatgctacaTACACATATCCACATACAGATTGAGTGACC-AAAACTTTGGTCTGGCCCTGCTGGAGAGCAACATGTTTCAAATTAACAGACTTGGCATTAGACAGGGGAACATATGGAACATGCTGACCTCCTGCGACCTACCAATTAAATTAATGCAGCCTCTACTATG--TACAAAAGTTCGAGCCAGTCCCCAGATCCAGTAACTCAGCAGTGTTAC----CAGGCTTGCTTGTTAGCAGCTTTCACTGGCAC-----------AAAAATAAGCCAGGAGACAAATGATTTGGAACTTGAAC---CCGAA---CCTAAACTGTCTCA---CAGCACTGGGGTGGCAGAGGTACCCTCGCTGGGACCTGTGTGACAGTGCTGGTAGGTGG

a score=27743
s chr3           152029680 1245 + 160039680 acaGTCACCAGGAGAAAAAGTGTGGAGGGAGGTGGAGATA---TGATTGTGCACAATTAGAGCAAGGCCATCTTCCCACTCTCTAATAGCC-TAACCACAGACAGATGACC----ACACTGTGGTTATCTGCCCTGATAACACCCAGC-----CACAAACCAGCAAA-TGCAGGCAGAAGAGACTTCAAAAGAAGCAAACGAAGTGGCTGGCCCTGCCTAAAAAGGCACAACTCCTGTAAACAAATGTGCTCTGCTTTGAGCATGAGCCACTAAGCAATCCCAAGTAACTTGCTGCTGCGTTAGGTCACTCA-CCCATCAGTGGGGAATATTTTCATTCCAATCAAATAAGAAGCTAATGAAGCTATGTAAATAGTGGTTCCATCACACCACTAACCTGCTATGTTGGGGCCACTCTGAGCTCTTTTGTGGTAAGACTCAAAAGAAATAAAACCTAGAGTGGAAGATGGAAAAGAAGAGGCCCCAACCTTACTCCCTTCCTCAGCAATTTTATC---GCCTCCAAGTCCTGAAGGAATGTGTTTCCCTCAGAGGTCTCATCTCACCTCTGCCACAGACTGAATTCAATCATCCCA---AGTGCCTTCTTGCTACAACTCTCC--------------ACTACAGATTGCAAAAATCTAGGAAACTGGGATCTTCTTTTTTTTTTTTTTTTTTATGTTTTCTAGGT--GCCTAGAAATGTTCTACCTAACAGTTAGGTAAGTGGGTGAGCACTCACAGAAAAGCTGGGGTTGTGATTCAGTGCTG----CAGTATATTA-----CATCCCAGAAT--------GACTATATCTAAGTGATTT-CCTATAACTTAGAGCCTGGGTAGTTCTCCAAAGATGCTATTTCTAAACAG--------------------------------CCAAAGGTTAAGTCATTTTGTTTCCTAGAAAAACAGTGGGG--GTAAAACAGGAAGTCAGTGGCAAATTGGGAAGAAGAAGCTTTACCCATTCCTCAGCCA-TGTGTGGAAGAATATTCTCATATTATCTGACCTTTGATGGGGAAC-TTCCCAAACTGCCTCTAACTCCGTTCCATCCAGCAAACCTCTCTGAATCATTCAAGAGCCATGTTGGTGTGGG---------AAGTTATTGCAGCAATGTTTTTCTTAAATATTGCAAATGTTTCAACATCTCAGAGACGCTGCTCATGGCTTGAGTCTCCTGCATCTGAACATATAAAAATCCAACACCTGAAATTCTT----TAGGTTAAGCAAAACAATTGAGCC-ATCTACGAACTCACCTGCATTTGGACCACCTACCAGTCTGGATAGATACG
s HiC_scaffold_1 138689250 1300 + 233722169 ATAACCATCAAAAGGAAAGTTGCGACAGAAGGTGAAGGGGGAGTGATGGTGATTAGAATGAGCAAGGTCATCTAACCATTCTGTGACAGTTGTAAAGGTCCACAAATGGCCCGGAGATCTGTGGTCATCCGCCCTG------CCCTGCTGCCCCTCAAACCAACCAACTGTACCCTGAGGACACTCTAAACAAAACTAATGAACAACTGAGTATCGCCTCCAAAGACAAGGCTCTTATAAATAAGTGTGTTCTGCTTTGAACACTATCCAGTAAGAAACCTTGGGAGAATTGCTGAT---TTAAATCATCCAGCCCAAGACTAAgtgatgtttttattccagtcaGATAAGAAGTTAATGAAGATATGCAAACAGTGATTCTATGAGACTGCTAACCTGCAGT-CTGAGCTCATTCTAAGACCT----TGGtaagacacaaaagaaatcaaacacagaatgtaagagagggaaataaaatacACCACCACCTTCCTTTTCCAGCTAATTTCTTCACAACCTCCCAGTGCCAACCGAGGAGGGTTGACT-AAATGTGTCGACTCTTGTCC-CCACAAA-TGAATTCTATCATTTCACTTATCACATTGTTATTAAAATTATCCATCTCCTTGACCAAATTGTGAATTATAAACTTGTATGGAAGGgggaaaatcttttat---------------ttttctgagcaaATCAAGCAAGTCCATTCTTTACA-------AACTTGATAAATATTCACTGATAAGCCTGAGTTCAAATTTTATATAGTTTCCATTATACTACCCTGCATCTTGGaatcaaacataaaaagtaaataactGATTTACCCATGACTT--TCTCTGAGAAGTATTGCAGAGAAGCTATTTCTAAACTGGACCTGGAGGCACCCTCAGTCCAAATTTCTGCCTAAGGATTAAGTAGCTTCACTCCCTTGAAAAGCAGTGGAGTTGGAGGATGGGAAGTTGATGGAAGCCAGT---GGAGGGACTTTACCCACTCTTCAGTCATTTTGTGGGATCACGTTCTCATCTGACTTGACCTTTGGAAGACAACTTTCCCAAACTGCTTCTAACCATATCCCATCCAGAATTTCCATCTGAGTCATCCAAGAGTCATTTGCACGTAGGTAGAACAATAAGTTATTGCGACAGTGTTTTTCTGAAGTCCCATCAGTGTTACAACATCTTCACCAGGGTATTTATAGTTTGGGTCTTCTACATCAGG--ATATAGAAGTCCAACATCTGAGGCCCATGGACTGGG---AACAAAAGGAAGGAGCTGATCTATGAATGTATCTGCATGAGAACCAGCTACCAGGCTATGT-GATACG

a score=21546
s chr3           152031562 1725 + 160039680 TTCAAGAGGGCAGCAGATTTGCCTGCTGGCTC-CATGGCATCCCTGGGGTTCTGAAGAGTGTCAACGAGTTGAGCAGATGAGGCTTACACGTTCTAGAGATGGACAGGCAGACAGCCAGCGTGGAAGATCCTGTCTAGAAC-TCCAAGCTTCTCCGATGGGTGGCACTGCCTCTCTCTCCATTCTTTTCCTCCCCATCGCGCTGCT-----CTCAAAACCCCAGGAACCTTTAACCACTTGTTGCTCAACCGTACCTTTGTTTCCCTATCTTTGTTTTCTGAttctcaaaatacagtttccctacatagccctttctgtcctggtgctcactctgtagcgaagctggccttgaatgcacagacagcatctgtcgctgtctcctaagtactgTCCTTATGCTTTTGATCAAGTTATCCCTTAGTCTTCCGAAACTCTGTCACAGCGCATCATTTCTTCCATTCCCGTCTCACTGCCACTCCTAGAAAAGTCATTCTGTGTCAGATCAGACATCTCCTTTTAAAAGGCTGCTGCATCCCCCATGACTCCAGCAAACC-----------------------------------CTCAGGGGTGTGTATGTCCACCTCTGCCCTTTCCATATTG-TAAACCAGTCTCTGTCTCCACTGTTTTAATACACTACACTATGAACTCCTTGAGAATGTGAGCCATTTGTCCcctcctcctcctccttccccctcgtcttcctccttctcctcctcctcctcctcctccttccccctccttctccttctcctcctttcctcttcctcctcccccatcctcctcctctccctcc----cccctcctcctcatctccctcctctcctccccctccttctcccatcctcctcctTTGTTATGATCTCAG------GCAGCCCAGGCTTGGCTAATTTCACTCT-----GTAACTGAAG--ATGCGCTTTGGTGCTAGTA---------ATACAAGATTGCACAACCA-------CACGC-----ACTTTATAAG--------------GTGCTAGGAATCGAGGTCTAATCCGTATGTCAGGTCATAGCCATGCGTTTGTTGGCCTGGTCTAGAAGTTCAAGTT------------CATCTGTTGACACTCTAAACCAGGTAGAAAAGCAGCTCACGGTCCCAAGCTTCTTTGACAATATCATTGGACAGACAAGCTCATAAGCAGGTCAGGACAAGGGACCAGGAAGCAAAGTGACCAGAGAACATGGGAGGAAGCTTAAGTGGTGGGA-------------AATTCCACCCATCAATGAATCAGTCATGGTGGCTTCTGGGTGAGTAAACCCTCAGATGCTTTATTGAGCCCAAAAGTCATTTTGAAACGTCAGTACTCTCTAGAAAAG------------CTATCATTAAACTCT---CTTGAGAGCTTCAAGTCAT------TTTTTTTTTTAGTGCCTCCGGGTTCtggttttcttctgctgctttaatgcacaactacaaagct-gtggctgcaaacagcactgctgtgttatcttgcagtgctggagaaatccaaaacagggtgatgctaacatcaaggtttcagcaggcttgtatggattctaaaggcttacttagg-----atctgcccttgcttctccagtctccagaggcctccAA------GATGCAGAGCTCCTGTCTGCTCCTAGCAAAGGCAGCACATTACCGG------AAcctcctg---tgactcactctcagcctccacctctgtcctagagaaaccatctggttagactggg-gcacccaaatactccaagatacctgccccccacca-----taatcacattggcaa--atctttttctaggtgagacaacatgtccacaggtttc
s HiC_scaffold_1 138691280 1741 + 233722169 TCTAAGCGGGCAGCAGATTTGTCTTCTGGCTCACATCTGATTCTCAGGGTTTTGAATAGCATCGAGGCATTAAATGATCAATTGTTACTCACTCTAAAGATAGACAGTCAGAATGCTAGGATTGAAGCTCCTGCCCAGCCCATCCAAGATTCCTGGAGGCGTGGCCTTACCCACCTCTTCATCCTTCTCCTCCCCAAATCTCTGCTTCACACTCAGTACTTCAGTAACAGTCACCTGCTTGATCTTTGCATACTCCTTCAATTCTCCATGCTTTTGCTCGATTTGTC------CCGTCTTCCT---TGGACCCGTATCCCTGTGTGCTTTTTCT----CCATTCATACCCTGCAT-CACATACA-CCTCCCTGGATAAGGCCTACTCATTTTTTGTAAGTTCCTGCTCAGGCGACTCCT----CCTCTAGGA---------AGC---------------TTCCCCACTC-CTGCTacttgaaagaaagaga----gagacaga-cagacaggg--ggGGAAAAGGAGgatgga------aggagagaaggagaaaggaaaatggaaggaagaaaagaaacagatagtGAAATCAGTGATGCGTATTTCCATCTTTGTCCTTGCCATATCCCTTAatacctctctgtctctgtc-------------------------------------------tctgtctctgtctctgtctctgtctct---gtctttgtctctctctctctctctctgtctctctctctctctctctctctctctctctctctctttctctttctct----ttctctttctctctctccagatTATCATCTCTTCAGGGTGTGGGCCATgacttatttatttatccatcTCTAATTTCTATCTAGACCTGGGCACTGTGTAGCCC---CTTGACAAATTACTGTCTAAGTAGCAAACAGAGCCAAACACTTAGGTACAACTATAGACCCAAACTGAAAAATGTGCATCGAACCCTGCCCCGCTGGTGACTGGGTAAGTGGATGCCAACAGAGCACCGAGagttgaagacaggtttgcat--------aAAGCCAGGGTCTTATTACATTGCCAAGGAGGATGAAGCcagaaagaatcaacagctgCTGACACTCCAAACAAGgtagagaagaaactgaagattCCTAGGTTCTTTAA----GCCATAGTGCAAA--ACCTGGT--GCAAATCAGGACAAG----------------TGACCACTCAACGCAGAAGGAAATCTAGGTGGGGGAAGGGGTCCAAAATAAAATTCAGTCATCAGTGAGTCAGTCACTGTGGCTCCTGGGTAGTTAGACCCTCAGCTGCTTCAGTGACCCAGAATACCATCTTAAAGCACCAGTGCTCGCTGCACAAGACTTGAAATAACCCATCACTAAATTCTAGACTGAAAGGATGGAAACCACATAATGTTTTTTACTGAGAGCCCAC-TGTTCTGGTTTCCTGCTATTGCTTtaacaaataaacacaaagttAGTGACTTAGGAAATCCCCAATGTATCATCATGCAGTTATGGAGAGAGCCAAACATTTTAGCAGCTAAAATCAAAGTATCGACAAGGCTGTGTTTCTTCTTGAGGC---CGCAGGGCCAAGTCTGTCCCTGCTTCTCCAGTTTCTGGAGGTTGCCCACTCTTTGAAACTGGGCTC-------CTCCCAACAGTGGCATCACGGCTTCGGTCTTCACACCTCCTGAACTCTCTCGCTTTGGCCACCTGCTTTAGTCCTGAAAGAACCTTGTGCTTACACTGGACCCATCTACATAACCCAACATAATCTCCTCCTCCCAAGGCTTAATCACACTACAAAGTATCTTTTGCCATAT-AGGCAACATACTCACAGGTTCC

a score=31286
s chr3           152040511 1181 + 160039680 ACTACATAGCTTATAT--CTTCTGAGTGATAATTTCAGCAGGACTCTGTGCCTGACACACCCAAGGGTGTATGAAGTTCTATGTCACTGAAACCCAAAATGTGCAATCTAGGACAAAA----GATGAGACTCAAAGCAGATTATAAAGGACAAAGAGTATAAGA--GACAAAAATATGGTTG----------------------GCAGATGTGCCAGCAT-------TTGACTGCCTACTACGAACATAAAAATGCACAGATGTTGTTCCCATAATCCATCAGAAAACCTGCTGAGTCAAACCTCAGCAAGAGAGCTCCTAGGAAATACTGACTAACTTGAACTAGCCTGGGCCGCATCATTGCTGAAAAATTCATACTCAGAGAAAAGAAAATTAGGGATGCTCTTTATGAGTA--TAAACCAGTAACATAATCCTAA-ACCCTGCCCACCACGGGCTAATGTTTGAAGAATTGCAAACTCTTAACGTTGTGAAATGACAGTAATGAATTGAATAGATTTATTTCCCAAACTCCTGGGTGTTGCC-GAGACATTAAAAGGGTCAAAGTTTGACCACA-CTCAGTACTGTGAGGCAATGATTGAGGGATGTGTGC-ACCTTAGGAGC---ACGGTCATGCAGGAAACTCCAAATTATGAGAATAAACTATTGCACATGCAA-CTGTATTCATGCCAAAATTGACTAGCACTGCTCCAACATCT---ATTCAAAGGCAGCCAAAGTCTCTTCCATGGGTGTATGACTTCCACCAAGCCCAAAAGAAGTCGTGCCAACCTGGGAAAAATACAGGAGATTCTTCGGGATTGGGGAATAG-------AGCTTCTATTGCTGGAAATACATATGAACATTCCAGGATTCTTTCCCCTAAAA---------GCAAGCT---GCACCCAAGAGTTCA----------------------------------ATTCCAGAGTCCATCCAC----------------------------AAATGTTTAATGGACACTCTTCCTACAGCA------------------GTCCCTGAACATGAGCAGGATGCTGAGGAAGTG----------------TATGTGGAGGTGTAGGCAAAAG----------------------------------CAGA------------------AGGACGCAGG------------------------TAGGGCTGAGCCCTACAGGAAGAAAAGCTCAGAGTAGGTGACATGGCTGTGC---CACACACCTGCTACAAGCCACACTGGTTGCTGGAGCTCAGGCACACTTTTCCTGCACTCATTACTTGCTTTTCATCACACAGCCTGTATGTATCCCCACCAGGCTCAGTGCTCCAGGAGAAAATTCTGCTAGGGTGGGGTGAGACTTatag
s HiC_scaffold_1 138697156 1393 + 233722169 ACTTCCTACCCTGTATTCCTTCTATATAATAATTTTGGTAGAGCCATGTGTGTGAGATTTGCAGGAGCATGTCCAGTTCTATGTCAGTGACATCTGAAATGC-CAATA-AGGACAAAAAAAAGATGAggttcaaaatagatgttgaag---acagattataaaatcaacaaaaacatAATTACTTCTGAAAAATCTCACAATGTGTTGATGGCCCGCTATGGGGGTGTTGATTGCACACTACACACTTGAAAATGCACAGATGTT-CCCCTACAATCCACCAGCAAGCCTGTTGCCTCACCCTTCAGCGAGAAAGAGC-TGGTAAACTTCGATTAAATTGAATTTACCAGTGCTACATCATTGCTGAAAAATTCACacttggagaaaagaaaaacgaaGATGCTCTTTACGAGAAAATAAGCCAACTACTGATTCTCAATACCCTCTCCACCA---------GGCTGGAGAATGACAAGCTAGTTGCATTGTGAAACGATACTAACAAGTTGAATAGGTTTGCTTCCCGAACTCAAGGGTGATGTTTGAGACATTTAAAGGTTCCAAGTTTGGCAACAGCTCGGCACTGTGTGGAAATGACTGAGGCGTGTACTCTACCTTTGGAGCCCCACAGGCACTCAGGAAACTCCAAATTACGGGAATAAGCTATTGCACATGCAAACTGTATGCACTGTGACATTTATTAGTGCTGCTCCAGCATCTTCCATCCAAAGGCAGCCAGATTATGTCCCATAGGCATATGACTTCCACTGAGCTGAAGAGGAATTATGCCAG-CTGGAGAGAATACAAGGGGTCCTTCAAAATTGAAAAGTAACACAAACAGCTT-TACCGCTGAAAATAAGCATGAGCACCCTGCAAGTATTTACTCTGAAACATGTAACTGGAGGTTCAAGTCCCAAGGAATCCACAGCATGCTTTTTCTAAAACATTCTACGAATGGTACTCCAGGACCCAGCCGCATGACAACTTTGTTTCTGTTGACTTGGTAAGTGTTTTTGGAGCAGCTTATATGCAACACACTAAGGTCGTACTAGGGTCACAGAGC---TGCAGAACACAGAGAATGTGATCCTCAAAGAGCTGATAGGGAGGGGCACAGACAGGAGGAATCACACAAGTAGGGAACTGTCAGTGCTGTAACAGAAACATCCGTAGCATGGTGAAGAAGCAGGCGTGGGCAGGGGACTGGTGACAGCCAGGGTTGAGCCCTAAAGGAAGAGTTTTCCAGTCCA-ATGAAGTGG-TGCACAAACACACA---GCTGCAAAGCACACTGCGAGCTGAAATTCAGGTACATCTCTGCTATAGTTATTAGTCTGTCTTATTCACTCTGCCCATAT-----CCCACCTGCCTTGGTGCTCCCAGTGGGGACTCTGCCAGGGT-GGGCAAGACTTCCAG

a score=42419
s chr3           152046764 1823 + 160039680 TGTTCATTTGTGGCCAGTGGACATTGAAAACTAAGCTCATTACTGGAGATTC--CTCCTCCTCTCTGTATTACAAAATAAGAATGATATTTGATTATCTCAATTCCCCACACCCTCCTTCCTATGCCTGGCAATCAATAACATCAATATCACCTCTATTCA-TCTACAACCAGTCTCTAATACCTCTTAACTTGTTGGGTTAAGTTAGATCCTTCCCAAAGAGAAGAGATTCTAACATGAAAGTAAAATGACCGGTCCCTCTAGGTTTTAACCTCCATTAGAAAACAGAAAGCTAGAAAA----------CTGCCAACACGTGTAAAAGACACCAACAGCTGCTGTATTGCATAACACTACAAAATAATGTTTTTCTTGGTTTTAAAAAAAAATGGGTGAAATTCCAGGAAGCTTCTAGAATGATTGTCTTTCTGAAGTCAACAATTGTGTTGATGGGAAGTTAAGA-CAAAAACACACATCTGCATTAAGGATTCAAACAGGACTCCCAAGTGAAACATTAGAATTCCATCGGACTTTATGGGGGGAA-----ATATTGTAACTAGCTTGGTAAAAATGTGTATGACTCTGGCCAAATTCAACCACATAAGATTGCCTTTCATCTGAGTGTTTTGGTAAACGACTAG--------TAAAATTCAA-------------------TTGATTTAAAAACAACAGCAAACAAACAAGCATCTTTAACAGTCCCCCAAATCAAACATGTGGT--CTCTGA-CTGCTGACCCCAG-CATGGGACCTGTACGCCATGGTAA---CCACCCCAATTTAGCCATTGGTTTTTTTTTTTTTTTTTTCCATTCTACAAAGTATCCATGAA---TGTATCTACATGCTCTGTTGAAGAAAGCTAGCCACAGGCCACAGCAATGAAGGCTGTCACTCACGTG-CCCTACCTTAAAG-AGTACACATTCCTACCCTCCTGTTCCCATTCTCCCTTGGAAGGATCAGTCACTGTGGAATGATTACTTCACTGTTCTTATAAAATGCTCCAGAGCAATCCCACTTCCTGAAGGAACCACACCCTCGCTGTCAACGAAAGACAACAGGCA-GATAAACAAAAATAAGAAGCTG--------------------TCCTGTGTGAGT------------------------CTGGCCTGTGCTCTTGATAGTACCAAGTTGTAGCTGTATAGACAAGCACATTCATGAAAGGAGCCAATAATTATCTTTAAAATATTTCTCTGTTACCTCTCTTTGGTTTATTTTCAATGTTGTTCTTTAAAACAATATCTTCAAAAGAA-------GGTAAGGATTAAGGAAGGACCAGGGATGGAGAACATGGAAAGAAGTTGAATTGCACATTACATGGCCCATCCCCAAGTTTCAAGGACAGC--------------------------CTCAAGGCTGACAAGGTG----------------AGTCAGTTGTCTATTTCCCACAGCCAACA-ACTAAAGTCTGACAT------ATTTCAAACATGACTCATGAA------TGTGTCCTCACTGCCAGGTTAGTCCAGAGCTCTTGACAATTTAACTAAGAGA---AGAAAGGAAAAACAAAATACCACCATGATCCAAATCTTTTTGTTCTTaaattttgataacattggtatagccaa-aactcatctaggccatagagccagcagccttaggaaaatatccataaaatgtgaaggcat---------atcttcctgactagtcatctatagtaaagtcactacaaaaacgtttctgtaatgagcc-acttgctctttgggattattctctataaaccagtgaagagctgggggaAGGGGagcctccttttgctgaaaaagaaatggttataaatgtaatggctcaac-ataacacccttgaaaagtgc----tataagtcagaagccagcatggaacggctaggta--caactcaagattctaaaagtccaaatccaag
s HiC_scaffold_1 138706270 1903 + 233722169 TGTGAATGTGTGATCCTCTGATACTAAAAACAAAGTCCTTTGTTGGAGGCTAAACTCCCTCTCTCTGTGT---GAACTGAG--TGGTGCTT---TATCTTTGAACCTCATCTCCTTCTCTCCATGAC-AGCAATCTCTAGCAGCAGGATCATCTAAATTAGCTCTATATTCTGCTTCTTCCTGCCCCCAAAATAC--AGTTGA-CTACCTAccttttaaagagaagagatttcaGGACGAATAAAAAGGATCCTACCACTCT-GGTTTAAAccttcataagaaaaataaaaaataaaaaagttgaagAACTTTCCAAAAAGTGTAAAAGACACCAGCAGATGTCTTATtacataataataaaagacaATATTCTTGT--------GAAAAATTTGGGTAAAAGTCCAGGAGGCATCTAAAATGATTGTTATTCTGAAGTAAACATCTGTGTTGATGGAAAATTAAGACCaaaaacacacatgtgcactcaAAATTCAAACACAATTCCCAAGTGAAGCATTAACGTTCCATTGGTTTTTATGGGGGAAAAATAGATCTCCTA---AGCTTTGTAAAGTTTTGTACAATAGCAGCCAAATTCAACCACACAAGACTGTCTTTCATCTGTGTGTTTGGGgaaacaactagaaaaaaaataaagttgaagtTTTTGTTGTTCGTTTCCTTATTTTGGGAG----GGGGAACTTCTAAGCATCTCCACCATCTCCTCCA--TGAGCCTATGGTTCTTCTGAGCAGCAGACACAAGCCGTGGTATTTGGGCCTGATGATGGGTTCTTTTCCAGGCTAGTCACTGA-------------TTTTTCCATTCCACGAAGTGGTCATGAATGTTGTGTTTATGTGCTCTGTTACAGAAACATTCCTG-----TACACCAGTGAGGGCTGCCTCTCAGGCGCCCCCACCTTGTAGAAATACATATCCCT-CCCTCCCGTTCCTGTTCTCCTTTCCAAGGATGGGTCACAGTGGAAAGATTACTTCACTGTTCTTATAAAATA---CAGAGCAATCCCACTTCCTGAAGGAACCACACCCTTGA-ATCAGCAAAAGAGAATAGCAAGGACGCACAAAAATGAGACGCTATGTGTGCACTCATCCTGTCTTCTCGTGAAGGTCAACTTCCTTAAAGGCAGGAAATACTTCTCTGTGTTCCTGATAGTGCCAAG-TACAACTTTAGAGACCAATGAATTCACAAGAAAAACTTACGGTGAAACCCAAAAga----------------cctttatttattttc-atatctttctGTTTAACAGtatcttcaaaaagaaaacaatggaaaagaataaatgaagagaGAGGATGG-----------AGACGTTAAACAGCACTTTATATATCTGACATAGAAGCCTCACAGACAGCCTTGACATAGGCACTACTGTGCCCGTCTCACAGATGAAGAGCTGGAGGTTCACATTGCTAAGGAACTTGTACATGGCACACAATTAAAACAACAGAGCCAGATTTCACACCACTTCCCACTGAGTCCTTGAACTTTGGTGTTTCTATGCTGTTGAGTTAACACAGAGCTCTTGACAATTGAGCTAATAGACTGAAAGAGCAAAAGCCACAT----CTATGA-CAGAAAcatttcattcttaaaatttgATAAAGCTGGTATAACAAACAGCTCATC---ATCATGA----AGCAATCTTAGGGAAACATCCATAAAGTCTCAAGCTTTAAGCAATGAACACTTGTGATGAGTTGTATGTAGTAAAAGAGCTGCAAAAA--TTTATATAGTGAGATGGCCTGCTTTATCAGATTGCCCCCTAAAATCTAATGGCG---TGGGGGagctgtattatttttctattgctaaata-------acaaatttaacaactttttaaaaataccacttgCTAGTGCACCATCTGTGCAAACAGCCAACATGGCATGGTTAGGTATTTCACTCCAGATTTTAAAAGGCTGAAATCAAG

a score=19940
s chr3           152050410 645 + 160039680 CCAGCAAAAGCACTTCCTCCCCTCTCAGTAGCCTGCACTGGGCCATGTGCCCACCTTAGAAACAGTGAATATG----------------------TTGGTTTAAGCCAGCCAGGGTCAACCTCTGGAGCCAG--ATGGGATATCC------ACTTTATGGCTGAAAAAAATACAACCTAACCCAAAAGACAAA---Cagagagagagagagagagagagagag---------agagagaTTGACAAAAGC--CTATTGTACAGAGAAGCTGAAGTCTCCAAGGTCACACGCAAGAGTTTTCACTGCTTGTGAGAAACTA-GTGTTCGTTGTTGTGTAACTTATGGACTCTTCAGTCCT--------------CAGTGTTAGAACCCTGTCTAATTTCCTCATGGTTCAGCAATTAGAGCACAGAGAAGCGATGCAATGTGCCTAGGGATATGCATCTCATTAG-GCCATTGAAAAGAACATTACCCAGGTGTGCTTATTTCTGCTCCAACCCT---GGTATGTTATTAGTACACAATCAGGGTGAATATCAGGCCACGTGATGTGTCATTCCTGTTATTCTGTAAACACAGAGTTTACTTGCAAAAACATCATGTTTGCTAGATTTCTAAGGAAGGCAAATAGGGAAAAAGACTGAAATGTGGAAGAATAGAATAATATCTTTTAATTTGGTTTTAACTCACAGAACT
s HiC_scaffold_1 138729319 679 + 233722169 CCAGCAGA-GAATTTCTTCCCCTCTTGGTGACCTGAGCTGAGCCAAATGCC-ATTTTGGGAACAACTGACAcgctcagaaaatggaaaatactaGTTGGTTTAAGCCAATGAAGACCCCTCTCTGAGGCCAGTTGTGTGATATTCTACACAACTGCATAGGTGAAGCAAATACAACATacccttaaaaacaaaaatcaaagactTTTGAAGAAACTAAGAAATGCATCCCCCAAAGCAATTGACAAACATATCTATTACACAATGAGATTGACTTTTCCCAAGTCATACTCTAGTATTTCCACTTCACATGAAAGACTATGTCTTGGCTGTTGCATA-------GAATCCCTAGTTTTTAGGGTTAATACTGCAGAGTTACAATCTTGTCCAGTTTTCTCATGTTACAGCTATTAGGGCACAGAAAAGTGAAGTCATCTGCCCCAGGACACACATCTAGTGAGTGCCATTGAAGAGACCATTACTGGGGTGTTTTTATTTCAGATCTAATCCTTCTGGTATGTCATTACTACATAATCAGGGTGAGAATCAGACCATATGATTTGTCATTTCTGTGTTTGTATAAACACAGAGTTTATTGACAGGGAAAGTAT-TTTGCTAGGCTTGTGAACAAGG-AAATAGgaaaagagtt----------aaagacagaaacatattttt--------ttttaatttacggAACt

a score=34299
s chr3           152059490 2015 + 160039680 ATCTACTCTGGGTTTTACACCTTAT--CAAAACAGGCAGGAATCC---AATATATATTAGTCTAAAGTCCATGATCTTCCCATTGAAAAATACCACTCCTGAGAAATCGTGGTAGCATTTAAATACAGATAGGTTATCTTTTATTTGAAATCCTGAGTAGAATAAAAAAGAACAGAAATATATACATACAAACTCAAACTAATTACCATCTTAATTAATGTAGAAATACCAGAGATTATTTGATTCTAAAAAGTTGAACATGGCAGAAGAAATTACTATCTCACAGTAATTAAAATATATAGGAAACCCTAGACAAAGGAAGAAGAGAAAAGTTTACTCCTATAAATATTTGAAAAGAGTATCCAAAGGAAAGAAAGAATTCTCTCCTTATTGTCTACCTGAGCCCACCGCTAAAGAGGGGGCA-TCTCGGTTCCTGATC------CTGTTCTTGCTGCTGGCTGATGGAGGCTAGAGTTCACCCTGGAAATACATGGGATTGCCCT-----TAGTTACCAAATCAGCCCTGACACGAACAGGTTG-CTCCTCAAGGCTACTCCAGCTGCCTGACTCAGC------------TGCCAGCTCTCCCTAGCCAATTGGTTTAAAAGAT-----AATGACTTTCAAGAAATTTTCTAAAATCTGTATTTTATCCCATAGAAAAAAGAGAGGCACATTTATTCTCAGCTATGAGTCAGGGATGTGCTGGGATTTGCCATGACCCCCTTGGTGGGGGGGAACAC------ACCTGTAAGGCCTTTTAAGTCATTCTCCTCGGCAGCCCTCC-CGGCCCACGGCCCCCAAAATCATCTGAAGTCCAACTTGGCAACTTTGCCTCACTACATCTAT-GTAGTATATCCTGGAATTATAACAAATGAGCTTATTATTCTCTTACAATAGGCTGAAATCCATTAGGACAACCCTGGTTAATGtccacttattcggt-aagctttcttgagaacctaccatatcccatacaatgtgctaagagatagggacT---gggccagcaagctggctcagtgggtaaaggtgctttagttagactcccaga---atccacctggtggagggaaaacaccaactcactcaagctatccttgtcctccatacaggcaccatgatccacatgcccacacataTGTAGACGCACATACACATAAAATTAGTTACTTAATCAACTAATTTTAAAGATAATACGGATTTTGAAATGAATCAAATGGAGTCTTACCATCAATGTGCCTTCATCTATAAGAAGATAAATGGACAAGTGTTCCACTAATAAGTTTATACTATCAGCAAGCATCTGAGCAGCTGCTGTGACCCTGGAGTTCATTTTGGGTGTTGGAGAAACAAAGACAAAAGTCTAGGCCTCAATGGGGAAATATTATTA------------------ATGTCCAGGAGGAATGAACATC----------------------------CTGAAATGAGCCGTGTGCAAAGGAGAAGGACCTGGCCTGGGATAAACC--TACTCCTAGAAATGAGATGGAAGGACACACAGA-------CACCAAGGGAGACAGCCTGGGAAAGGCAGAGAGATGCCC---------AAGGCT----------------CCCAAGAATGTCCCCCCACGTGATGCTGAAGCTGGAGACCAAACAAGGTTG-AGCATTTCC-TGTGAGATTTTTCCATGTA-TTGCATTCGTGATACA-ATCAGTGAATTATTTATGTGACAATCAAGCCAGAGA---------TGGGAGGGAGCGGTGGTTAGT--------GTAAAATCATCCAAACCCAACCGTTCTGGTGAGAAACGGTGACTCCACTCAGGAAACATCCTTTGGCTCCCCGAGAGACACCAACTTTTCTGAATAATTTGCTTTTGCCCAGTG------CAGTCTCTGTATTTGCTAGGCTATG-GGTTTGTGTTAACTTCACTGATTTCACTTGAGTAATGCTCACAATTAATTAGGCAAGCGCAGGGGCCTTGATGGACTCTGAAACACTGCCAAGCTCTGATTTCCCCTAAGCTAAGGGAAACTTAATTAACATTTCACTCATTTCTAGAAGCATTTCAATTTGCCCTTCTCTAGAGT---CCACCTGTTCTAAGAAGGAGAAAATAATTATAGAT
s HiC_scaffold_1 138744814 1872 + 233722169 atatacGCAAGTCTTCACACTTTACACCAACAAAGACAAGAGTCACCAAATACATCTGACTCTAAA-------ACCTTCCCATTGCATAGCACTACCTCAGAGAATACAAGATACACTATAAACAC-----------------TTTGAACATCTGAATTGAGAATAAAAATACAG-------CACATGTAGACTCAA-----TTGTTGCCTTAGTTAATCTAGAAATGGCACagcaaattaaattcaatatGGTTCAACATGGTAGAGGAAATGATTACACCAAAGTAAATAGAATGCACAGGAACACATGGGTAAAAGTAGAGCGGCAAGGTT--CTGCCAGAAACAGGAGGGAAGCATAGATAGAAGAAAACACGA-TCGTCTCCTTTCAG---GGCTGAGCACATCACTGAGGGAGAAACAAGCTCTGCTCTTCatcatttctctgttcct--ttctggCTGAAGTAACTGAAGACCCACCCTGGGAGTCAATGGGATGAGCTCCGAGATGGTTAGCAGATCAGCAGTGGCACAAATAGTATGACTCATGGAAGTTACGCCAACTGTCTGACTCAGAGAGCAACTCAGATTTCAATTCCCTGTGGCCATTGGATTGAAAAGATTTTGTAATGATTTTCAAGAAAGCATTTAAAGTTCATATTTCATCCCAAGGAATAGAAAG-GATGCATATGCTCTCTATCTTGTGTCAGAAATGTGTCAGACCTTGTGAGGATTCCCT-------AAGGAATACTCACCTACCtgtaatttcttaaaaaatattatc----acatCTTTCTTCTGTCCAGTGTCCA-GTGCTTGTCCATATAATAATTTGACAACCTTTCCCGCTGACTTCTGTAGTAATATTCTC----ATCATATCAAG---ACTTCGTATTCTTTTAGAATATGCTAAGATCCACCAGTAAACTCCTCATAATTATCCATTTATCAGGTTAACCTTTCTTGAGACTCTATTACATGCAAGGCA--GCGTTAGGTAGTTGGGATTCATAGTTAAACAAGGTGGGTC---------------------TTGGCCACCAGATGAATTTGTCTAGTGCAGGAGAGAGAC-----------------------------------------------------------------------------------------------------------------------------------------AATAGAGT--------------------------------------GGACAGATACTTCATTGATAAGTTCAagtcttcaaaaaatatttgaacagCTACTATCTCCCAGGTATTCATATTAAATGCTGGGGATGCAAAGACAAAAACCTGCTcctcaacagaaaaataacagcaCCCAAGTCAAGCAcagaaaaattcagaagaaaagaaagtttaaaattagAAAGACATGAGCCTGTGCTCCAAAAGCAGCTATGTGGAAATGAGAAAGCCCTTGTCAGAGATAAAATGGTGCTTTTGGAAACTCGATGAAAGAACATGAAGAAGACAATCATAAAGacagaaaacc--aaaaaggaaGAGCAGTGCCCTTGGGATCTCAGTCTGGTGAAGTAGTAGCAACCTGAGAATGTCCTCATCTG-GGTGAGGAAGC---AGACCAAACAAGGTTACAGTGTCTCCCTTTGAGACTTTTCCATGAAGTTATGTTAATGCCATGGATTAGTAAATTGTTTACTCAACAAGCAAGCCTGAGTATCaagtgttggggggggggggtgtttagTAGCTGAGGGTAAAATTACCCTAGCAGAACAACTCAAATGAGAAACAGTAA-------------------------TCACTGTTAGACACTTGCTATTGCCCAT------TTTTATTCCAATGTAACACCACTCTCTAT-TTTGTTAAACTTTGAGGTTTATATTGACTTCAACAATTTCACTTGAGTAACACTCTTAATTAGT---ACAAGCACCAGT-CCTTTACTGTCTCTGAAACACTGCCAAGCTTTGCTCTCCCCTTGGCAAAGGGAAACTTAATTAACATTTTGTTAATGTCTAGAAGTGTTTCaattttctcttctctgaggTTTCCCACCTGCtttgagaaggaaaaaatgttcatagat

a score=21743
s chr3           152061973 2155 + 160039680 TTTTAATATTTATTTTGTGTATTTCCTG--------TGCAAATCATCACCTTCCTGGAATTATGACACTTGAAAAAGT---GGAATGCACTAATTCCAAAATCAGAATACAAACACAAATTAGT--TATTGCCTCTTCTCAAGTGAGTCCTTACTGGTAAATCAACTTGAGAAACTTTGGCTACAGTGGAAGA-----------------------TGGCAAATGATATCTTCCTTTTGTCCGTATCCCTGCCCAGAAATTCACAGTGATGGGTCTTCTGAG-----------------------------------------------------------------------------------------------------AGTGGATTTCCAAAAAACGTGTGATAGAATGACATTAGCCAGAACTGCACTAAGGACAGCTCTGCCCCC--GCAGGAGATGTTTCCTGATCTACATCAACAGAAGAAGA-TACAACCATACTGTATTTGTTCAGCCAAACATTGCTGAGCAAGGACAAAAGAAAGGACTG----------TCTAGAAGTTGCATTTCATCA--ACTACCAAAATGATATTTGTTGAGGATTCCAGTTAAAAAAAATTAGAATA----GCCAAGATCCAAAACTGTTGAAAAAGACA----------GGAGATTCTCAAGTAAAAAGTATATAGTTCACTGTTCACTGTCATCTCTTC-ATCCCATAAAATATCTaggtctcatgcatgccatcacagcctctgcaaacccatgtgtgtatctaccctgttgtttctggtagttgctgcttccttggagtcattcattacctctggctcataaaatcatacttccttctcttttgcatccatctctgagctttgagcaaggggtttgatgaagacctcccaattagggcctcatgttccaaggcttttactctccaaacactgtccagtggtgTTTTCTTGACTCTGCAGTTAACTTTGACCATGCTCTCAGTACATCCTGCAGAAGTTACATATCATGTGCCTGAGGTGACTTGTATTATGGTTTTTTTTTTTAATCTGCTGAAGCCAGTGAAGGCAAGCCGAAGCTTTGTTCCTGATAAATTGCATAGCAATCCTCCGTTCTTTGAGCAGCA-------------------TCCCACAGTGC-TGTCAGCACCAGCCTTGTTTCCTCGTTTGCTG-GCTCCTTTCCCTC-CTAAGGGCAGAAAACAAGAGTGTGTCAGAGCCCATTCTTCAACACTTGGGCTGTCATATACTCTCCTCTTGGTTGCTGGTGATCAGACTTATTT-GTTCTTGCCTCAAGTGTGGTCATTTTGTCTCCTGTCCCTCTTCTCTCTTTCAAATCCTTGGATGCTTGC-CCCTCTCCTTCCTTGACCCCACCATGACAGAACTTTCCACACTGCACTGTAACTACAAACCTCCCTCTGC--------TTACATAAGCTCTATTCCTC--TGTGGTGATCTG-----TTAACACATCATTTGGTA--------------CACAGACATGTTTTAGGTAAACACCCTATTTGCTTGTTCCCTTGCTTGACTGTTTTTTTTGTTTGTCTGTAGCTCTGGGTTATGTTTTATAATTTAGCTTTAAGCCACACTTTCTTCTTCGAGGTAGAAGCCTTTTTCTTAAAGACTTGCCTGGGATTCTC----------AATCCAGCTGCCAAGCCTTCACATAAAGGCAATGTGAGCTTCGACCACTCTTCCCCAGCCACAGCTGACCTGGTTCTACCCAGATTCCCTTTCTTCTAACCCAAAGTGAGAAAAAAAAATGTGTCCTTGGACACAAAGGGGCATGACAAGATAAAAGA------AAAACCAGGTCAAACCTGTGTCTTCTATCAGAAGGACAGTCCTCAGGACT-CCACGTGATCTGCTGAAGTCCCCACTCGCAGGGAAACACCC-CTGAGCAAGGGTCTGAGTTGTGCTCT----------------------------------------------------------------CCgtatcatcttgtttgatcctgaaag-tctatgtgtaagagtttgttctctccattttacaaataaaaagaatctaaggtttgaaattgaaacaactaaccaa-------acagccaggtaaacagtaggttagaa-tcatagccaaatctacctgtctctaaagccgatgcCAATGTTATTTTTGCAAAAGCA-TGAACTATACCACAATGGCCTCTAAATACAGTCTACTAAAAGCACCT---------TCTAGGGGTAATG--AAACATAACATCCACATAGAAGTCACCAAGAA-AGGAAAGGATACAACTTGGGGAATGGAGTTAATGCCCAAAGGAAACGAATGACCATTAAGATATAGGAACAACAAGTGTCAAAATTCTACTTAAATGACTCTGTAATGCTTTA
s HiC_scaffold_1 138751690 2149 + 233722169 tcttAATTTAACTTTTAAGTACCTTCTGCATTACTATGTAAATCCTCACCTTCCCAGAATTTTGATACTTGAGAAAATTCTGGAATGTGGTTGTTCTGAT-TCACAATATAAACACAAGTTAGTGTTACTGCTTATTGTCAAGTGAATTCTTAGTTGAAAACTAACTTGACAAGCCTTgcctgcagaaaaaaaaaaggagaactaccTCTGGTTTCTAGAAAATACTattatcttctcagctgcatCTTTCCCCAGATCAACACAGAAATGAGTCTCCTGAGGGTGTGTTCtacttttggggggggtgggaaggtatcagaaattgaacctcgcacttgccaggcaggtgctatgccactgagccgtCTTCCCAGCCTCCAAGAGTGCATTGTAaaaaaaagttgaacaaaacGACAATATCCAGAATCAAAC-AGGTCCTGCACATCCCACAGGTAGATTATGTACCCTCTTGCACATCCACACCTGGACAGCACATCTGTGCCACTTCTGCACAGCCAAACGCTGCTGAGAAAGGAGAACTAAATAAGTTAATTTCCTTTACCTCGAAGTCTCCCCCCACCACCATTGCCAGCTAGAAG------GAGACTTCCAGTTAAGCG---TTAGAGTACTTAGGTATGTTTCAAAAATGTTCCCAAATACACCAGTCCACTAGAATTTCTACAGTAGAAAAGAAAGTG------GTTCACTGCCATTTCTTCCATCCAATAAAATA---------------------------------------------GCAGCAATTCTTATTTCTCTGAAAGT---------------------------------------AAATCTTACCCTGTCCTCAGCTCCACCCAT----------------------TAGATGTTTACCTATGAACTA-------------------------------------------------TTTCAGGTCGCTG--------------------------GCACCATGTAAA-----CATGTC---TGCTTCAGGT--------------------------------------CGGTGAAGGCCAGGTAAAGGGGTCAGACCAATGGGTCAGGCAGCA--TCTCTGCTCTCTGAGCAACACATGGTCCTCCAGAGAGCCTCTCACAGGGCCTATCAGAACCAGACAAATTGCCTTGCCTACTTTGGTCCTTGCTTTCTCTAAGGACCAGGAGCAAGAGTCATTCAGAGCCTGTTCGTGACCACTTGACCCACCGTTCACCTTCCGATTCATTGatcattaaaattttcatttcattcttggCACAGGTGTGGCTTTCTTGGACTCTGCCC-----------TTGAAACGCTCATGTCACTGCACCCTTTCCCCACTTAGCTCCATGATACAAGCGCTTGGCACACTGTAGAG--------GGCTCCTCTCTACAGCACAGGTTTCTGGAGCGCAGCACCTCACTTTGGAGAACCCAGTGCTTGGTTCATTACCTGATGTGTGAAAGTTTCtccatcaatattttttaaataaataacctat------------------ga-----tttttttttgatctATATGGCTTGGTTGTGCTTTATG-----GCCTCCAACCACGCTTTCTTCCCCAAGATAGATGCCTTTAGCTTAAATCCTGGCCTGGAATTCCCTTGGCAGTCAAATACACCTGCAGAGCCTTCTGATAAAGGTATCATGGCTTTCCACTTCTTCCTCCTGGCCATAGCCAAACTTGTTCTATACAGAAACCCTTCCTTC--AGCCCAATTGATAAATGAA----TGGCCTTGGATACAGG-------GACAGagtaaaaaaatgtagaaaatcgGTATAAATCTATTTCTATGATTTGAAATATAATTCT---GCCTGCTACTTGGTCTGCAAAGAT--------GCAGTTCAGCATCCACCAAGTCAGAG---GGATTGTGCTATAATTGagatagatgataggtagatgattgacagacagacagatagatgaaTAGATATTGACAGACAGAATCA-----TTTAAACCTGCCAGCTCTATAAGGGAGATTCTATCatctctattttacagataataaaa--cTCAGATTTGAAATTTAGGTAACTAACCAAAGCTCTTATCTCTAAATAAATG--AGATTACAATTCGCATCCAGGTCTGCCCATCTCCAGTGCCAAGCCCAACACTATTTCCACTACTCCACTTAGCCGTACCACAGTGGCCTCAAAATGGGCTCTATTATCTATACCTAGTGAATGCTctggaaataatgaaaaatatatcttcaaaataaaagacaccaaaaataaaaaagggtaagGGTTGAAAAAT-AATCCTTTGGTCAAATGAAGTTGATAATATCTAAGAgagaataatacaaaatataGTAACCTGGCTTGAATGATTgtgcaacatttta

a score=23074
s chr3           152064125 821 + 160039680 TTAAAGATTCATAGAAAGATACACAATAATTAGG-----------GGTGAAGTTGAGTAACAATCTCTGAAACAG---CTTTGAACAATGCTACTAGAACAGAAAGAACACTGCCCAAGAGCTGA-AGTTAATTACAAAGTTGTAACTGTTTTCCC------GCCTTTTCAAGCACACAAACTATCCCATTAG---TTGGGAATATTAAGTAATCTAAACCAGAAGTGACCAGCATGCAAATGTCCTTGCAACACAAAATGTTCT---ACAACCAGATGACTGAGCAAGATTAACGACAGAGGGCATTTCCACCTGCAGGTAACTTTCTAATGCTTGCCTAGAGAAAGTATCAAACTGTTTCCTTGATCACAAGACAGATATGAGTGGGGACCAAATTCACAGGGAGTTGGGGAAATGATGTGTAAGAAAGAGCCAGTGTTCTCACATACAACTGTGGGCT------TTTTTCATCAGGGTAACTCTGATTGGCCTCCTCTCCCCCAGCT------------------ACTGCCTTGAT------CCAGCCAT--------------GAGTAAGAC--CCCACTCAAACATTCCAGGGGCA------------CAACTCACCACATACTGCACTTCTTTCCTGTGGTGATCA-----CTCTGTGTGCTCCATCCTCCCCAGAAGATGCCTGG---AGATGCCTGCTTACCCTTCAGGTCCTAACCTGGGGGCATT--CCTCACTGGAGAGACCTTCCCTAGCTA-GTAACACAAAGCCAATCTCCTACTTGGCTCAACTAGTTCACTCT-----------TCTCTTTGCCTAGAGCATGCTGGCTGGTTTTTTACAAGGACATACTGCCTACTGAATTTATTTACTTTGACCTTTTCTA----------TTAGCACCTGGCTATTTCATTCATCATCA
s HiC_scaffold_1 138754896 913 + 233722169 TTAATGAGCCATAGAAAGATTCAATATAATTAGGAAAACTAGACAGGTTTTCGTAAACAGGAATCTCTGACATATGATTTTTAAGTAAAACTACTTAAACAGA--GCAACCTACC--AGAGCTAAGAGTCAATTGTAAAATTGTAATAGATTTTCCCACCTTGCTTTCTCAAGCACACAAACTATCTCATTAGCTGTTGTGAATATAAAATAATCCAAGCCAGAAGTGACTAGCATGCAAATGACTGTACGACACAGAATGTTCTCCTGCGATCAGATGACTGAACAAGATTAACCAGAGAAAGCATTTTCGCTTTCTGATAATCTTCTAATGCTTACTCAGAGAATGTGTTTAACTGTTTCCCTGATCAAACGACAGATAAGAGCACAGACAAAATTTACATGGAG-AGGGAAAACAATGTTGAACAAAGAGCCAGCATTTTAATACATAAATCTGAGTTCCTAAATTGAGCTTTTGGTTAACTATGATTTGCCCCCTGTCCTCCAATTCCTCCCTCACACCACCTGACTGCCTTGATTTATTGCCagccattcaaaaaaaaaaaaaaaaaagtccactcACTCAAACATTCCAGCCACAATGACCTTCTTTCGGTTCACTAAACACACCTGCTCTTTCCCAAGCCAAACCCCACTCTCTCTGTGCTCCAAGGTTCCCAACGCATCCCTGGGCTGGCCACCTCCTCATCCTTCAGGTCCCAGCCTAAGAGTTGTGACTCCCTTGAAGAGACCTAGGCTAGCCATGCAGGGGGAAGTCACCCTCCCATGAGGTTC-------TCTCTCTCTATACGGCACCTTTCCTGCCTTCAAAGCACTCACT-TCTCTTTACA--GACATGTTGC----------TGTTTGCTTTACTCTCTCTTGCACAGGAGGCCGAGAACTTTATTATCTCATTCATCACTA

a score=30948
s chr3           152071806 1099 + 160039680 TTCTCTGTTTTTTAACGTGGTTATTTCCTGACTCACTGGTCTCAtctgtctctaaactctaagctctgtggggaccaggactttttctgttccattcttataattccaatcgcaatgagagtttcttgcatatccagagaagacattcaataagggttctctgaaact--gaatCTTACGTCTAAAATCCAAGACCCGCAGACACTAACTCTACACACACCCATGGTCACTGTAATACATTCTTTGGTGCAGAG-TTCACTATTAGGAATTATATGGTGTTTTCTT--GAGGAAGAGGCAAATTTTGTAAGAGAATTCAGTGATCATGA----AGAAAGTATAAATAATGCTACAC-ACTTGATTCTAAGTACTGC-CAATTATGTCACCAGAATTATTCCTCAAGGTCATCTTAACTGACTGATTAGAAAAGATTGCAATCTCCAAGGCTTCTTTA-TGACAAAATACTGTTTTGTGAAGCATCTCCATTAACTTTTAAAATGGCATGTCAGCGTTTTCTTTTATATAATCCAGCAA-GAAGGAAATGGGCAGTTGTCT----TTGCAGCATCACACCCATTAGTAAACGGCAGTGATAAAGCAGGAAGTGG---GGAGGGAAGATTGACCGTCCATAATGTCCCCACACTGAT-----------GCTGTAAGAAAAAACGCAAGGTCTGATCAGCATTATTCACTATAGAATAGCCAAAGCCAAGAGCAGAAAAGATCAATGTCTATGAAATATTAAA-TAGTTCAGATCTGTTGACTGAGATCTAAAATATAATAGGG---AAGAGATATGCTTAATATTTCAGTAAAGATAGATTCAGGATAAATAA-ATGTACAAGTTATTTTTCTTGGTGGGAAAAACCATTAAGCTTTAGTTAACTAAGAGAATAAAAGCGTCAAAATACGAAAAGGTAAATAGATTCATTAATTTAA--------------TGACA--------TTTTGTGGGAATAATAATCAATATCTTGGGGTCTGAAGCCAGGTGGCCACT--AGTTAGTCTACAACCCGACCTTCAAAACCCACATACTGCAAGCCACATACGGGAAATTTGCA-ATGACCTCCCCAACATACCTACCACCCTTTGACTCAA--------AGACTTCAATGAGGAGCAACGAATG
s HiC_scaffold_1 138786447 1142 + 233722169 TTCTCTGCCTTGTATCATAGGTATTTGCTGATTTGCTGATCATTTAAGGTTCCAAAATAGTAATGTCTTGGGACCCAGGAGTGTTTCTATTCCTTTTTCACACTCACAGTACCAAGCATAAACCCTTGTACATACATGGTAGATGTTCACTAAGTATTTTTTGCAAGTTAGAAATTTAAACCTAAGCTTTAAGTCTTGGGGTCCCAGCATCTACATACACCAATATTCACTGCAATTCACTTTTTGGTCCAAAGCTTAACTGTTGAGTGATGTATGATGTTTTCTTACGagaagaagcaaaattttgtaaGAGAATTCAGTGACCCTGGGATGAGAAAGTAAAAACTGGGCTACATTACCTGATTCCAGATGGTGCGTAGATGTCTCAC-ACAATTAAGACTGAA---CACTCAGGCTTACCAACTAGAAGAGATTGCATTCTCCAAGTCTTCTTTACTGTAAAAATAATCTGTTATAAAGAATCTCTATGGACCTTTAAAAAATCATGTCAGCATTCTCTC--ACACAATCCATCAATGAAAAAAATGGGCAGTTGCCTCCCTTTCTAATATCAATACCATTAGCAAATGGTATTGACATGAGGGAAGCTGGCTGGGGAGAAATATTGAC--TCTATAATGCCCCCATACGGGTACTGGAAGACAGCTGGAAGAGAGATCACTCAGAAAAATCAGCATTACTCAGTAGAGAACAGTCAGAGCCAAAAGTAGGGAAGATCAATGTccataaaatattaaagtatgCCAAATTTGTTCACTaagatatataatataataaaaaataagatgtatGCCTGAAGTGTAAATGGAGACACATTCAGGATAAATAATAtgaacaagtt-tttttttaagtggg-aTAGTCTTTAGGCTTTTATTAACTAAT-GGATGAAAGTACACAAGAATGAAAAAGCAAGCAAATCCATAGATTTAAAGTTTGAAGTACATTGATAATGGAGACTTCTGTGGGAA-AGTTACCCAGCTGTTAGGTTCTGAGGCCTTTGGACGACTGCAGTTA--CCTCAGGGATAGcttaaatacatacacacacccaGCCACACGTGTGAACCGTACAGATGATTTGCACAACA------------TCTGACACAAGCACATACACACTTTACTCGGGAGTAACAACTG

a score=25127
s chr3           152088667 2117 + 160039680 AAAAATCTTGTCTATAACAAATGTCATATTTAACCACGGTTAAC----------AGGAGCATCGGG--------AGACAGTAGAATTAAAACATAAGTCACAGGAAGATT-CCCAAGATAAA-ACTGC-TCTCGCTCAAAGCGATGGCAAATTACTTAAA-TATGAAAAATGCCACAAAGAATAAGAAGCTCAAGTGACCGCAGTTAGAACAGTAAAACCTGAATCAACCTCCGGACAGAATTCTATCATAATAAAGATGAAAGCCTTTTCAT---------GAGCTGCAGAGTATTGATCATTAGCTGCCACGAAG------CTTGGCTTGCTTATTCAAGCAAAGAACCATTTAATTCACAATTTCCTGTTTGCCCAAAACTCGTTTAAAAGTTTTGCAGCCACGAATTAAGCTTTAAAATTTTTTAATGCGCCTGTTTAATTTTCTGCTTGGTATGAAGTCGTCTATAATTTTCACAGGATATTAAGCACAATCATTCCGGCAGCGCTCCACCAGTCAG---------CGCCTCTCCGGGTTAGTGGAACCTGGGCTGATTTTGGTAGAATTTGTCATCAGCCTCA-ATA-CTCTCAGAGACACCAAGTGCAGTCCCCAAGGCTCAGAAGAGTAGCTGAGTATCAGAGACACTTTAGCT--------GTCACCTGGCTGTGCTTAAGAATCAGACTAGACAGGCCAGAATGAAGACTACACCA-AACACCTGACAGACCTATCGGAATCACAAGGGAAAGAAAGGCAGCTTCGAGGTGGCAGCCCGTGCAGGTAGTGCCACCTACTGGTCAGACGAGGTAGAAAACAAAAAG---------CAGGGTTGGCCCA------CCTGGGC-------------CATGAAATGAGATAGGCTCACCTGGATGAGCCTACCTGGAAGACAGTTAATTCACTTT--------------------------------------------CATGtattattattgttattattattaCATTTAATGTTTAATTTGATATTATTGTTATT---------ATATTATTATGACAGTTCATTCACT--TTAGATTGTTATTATtatgagtgttttgcctgcacgcacgtttgtgcccagagaccagaattggatatcagatgcccta--caatggagttacacagggtcatgctccaccatgtgggtgctgggaatctaacccaggcactatgaaagagcactcagtgctcttaaccgttgagccatctctctagctcTGAATTAATTTACTTTTTAAAAGACTAATCC----CAACTGACTA-TTGATG-----------TTTAATCAAGAAAAC--TGAAGGAGTGGTATGGTCATAGTT------------------CATAGAGTTCAGAA---TGACCAATTATAACATGGACCTCAT-------TCCAGCTGCC---TTCCCACTCCAGATCCACCCTGGCCCTCAG---CTAAAGCGGGATGCATTGAGTACACCCCCTGACAAGTGGATCACCCCTGAAGGAGAAACTTTTTGGGTTTTAGTCAGTACAGTTAAAGGTAGTTTTATTTGGAGTTTAATAT-TGATGACAGCCTTTCAGATATTCCTTATGTATT----AAGTGAAAAAACAAA-------AACAAAATACCTTGTTCATTCAGT----------CCAAACAACAAAGTT------ACGCA------TTAGCTGGGACCAAATCAATTAAACCATGAGATCACTTACACCAGCAAAGGCATTGTAAGATTGGTAAAGCCAGTTCTTACTTGCCGAGAAATGGTCCCAATCT-------TTGATTTCTTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCTTTTAAGCCATCCTGGGAAGAACACATAGAGCAATGAGTGCACTATTAAATACAAAGTCCTAGCATAGTCGTTACTCACTTCAGTTTTCCTCACCTAAAGAACCA------------AGTAC---TTTTGCAT-CTAAAATCCACCATCTGATAATCTAAACCTGCTGGTTAGCCTGGCCTCGAGGAGGCGGCTCTTTGTTCGGGTAG-TGAGAGCTGTTAGCTGAGTCTACAGCCTTGCTTTCTGGGCCCTCATTCCCTA--CAGCTTTCCTTGGTTGGGTGAT--GTACACTTCACATTGTTCCCGTAAAACGTtaacagagtcggctttgcagagagctgagaattt--gactccaaatcctgttcaagtcctgaatttgccactagctacatatgtgcccttgagcaagtgacttaatttc-ccac--aacctacttttttaaaatatttaaaaatgaggtgaacgttact---caaggggttgctaa
s HiC_scaffold_1 138803974 2172 + 233722169 aaaattcttatttccaataaatgTCCT--TTaacatcaacaaatgaatgtCCGAAGCAGCATCAGGTGATGAATAGAGCGTACAATTAA---------CAAAGGCAAACTATCCCATATAAATACCGTGTTTAGCCCCAACTGTTGATAAATTacttaaaatgtgaaaaacattggaaagaagaaaaagtttaattGACAGCTATTGAAAC-TTCACATCTGAATCAAAGTCTGGACAGAattctattctt-taaaaat-----tcttttcctaaTATGACTGATCTATGTAATACTGattattaaatgttaaaaaaaaacaacttg--ttATTTATTAAAGCAAAGAATAATCTAATTCACAATTATGTGTTTGCTTGAATCTC--TTAAAAGTTGTAGAGTCATGAATTCAGTTTTAAAGCTTTT-AATGTACCTACTTAACTTGCTGCTTGATATGAAATCATTTATAGTCTTCACAGAATATTAACCATAATTGCCGCTGCAGCATTTCCACGCCCAGTTATTTCTTCGCTTCGCAGGTCTAAAAGAACATTGGCT-AGTTTGGTAGAACTTATCGTTCATCCCACATAGCTTCTGGAGCCAT--AATACAATCCCCAAGATTCAGCAAAGAAGTTAGCTGTCAAGG----TTCAGCCTCAGTGAGATCACAGAGA-GAACTCAAAACACGGAATGGACAAATTAGAGAGGATACAAGAATGTGATACCCGACTCGCTATGCAGATTCACAAG--------AGGTAGGATTGAGGTAGCAGCCAAGACAGGCAATGCCACCTACTGGTCAGCAGAGGTAGAGCAAGGAAGGGGTGCATTACGGAATTCACTTATATTATTTTGAGCATAGATCGGCTTTCAGTCAGTGAAATAAGC---ATTAGACCACACTTTCTGGAACACAGTTAACTCACCTTAGAGCCAAAGAGACAAGTGATTTTTTGCAGAGGACAAACATAAACATACCGTACTCCAGAGAAATTTAGAATGATCACTCTTGAAAATGCCACTGTCTTTATTCGGTCTCCCCTCCTACTTCAGAATTCCCTACACTTCTTAAATTGGAATT-CAATAAGTG--------------AATTTTGTCCtctgaaaaaaaatatgatta--attTGTTTTAATCAACACGATTACAGATAGtctaattctgt--ttttaatactGAGGG--------AAGCCCTATAAA--------------TATTCCCTGTT--------------------AACTAACTCAC--------AGGTTAACCTGGTGAAACTGACCAGTTTATGTACAGGAAAAATTTAGTACAGAAAACATTAAAGGAAT-TTATAATCATCTCTATAAACTCACCCTTTTGGCATACAAATTAGAGTTTTAATCCAGTA----ATGGACCTTGTGGTGTAATATAACTTTCCAATTCATTCCTCAGAACTTAAGTATCTCTGAGTTTTTGAAGTGG---TTGATGATAAAATTCCATGATCAAAAGA--ACCTCAAACGCTAACACCATC----------TCCAAACAGTAAATGACA----CAAGAGGCATTTGACATACGCTGgttctttttaaactttctctCTCATACTATCCAAACAAAAAGCCAAATGAACACAGCAATAGCCCTTACTAGTTTTTTGAACCATGAACTAAACAATAATGTGTCCAGAAAGCAAAATATCCACCCCAATCCAAGTCAATTAAACCAGGGTATCACTTTAACCAGAAGACGCTTGGAAAGATTTCTAAGGCCAGTCTTCATTCTCCAAGAAATGGTCAGAACTTTCTGCTCTTAATCTTTTTAA--------------------------------------------TAGTCATTCTAGCAAGA-----------------------GTTTAGCATAAAAAACTGACTTA---ATTACTCATTTTAATTCTTCTAACCT-GAGAGCCACTAAAACCCTCCAGTTCATGGTTTCCATCCCAAGATCTATCCCTTAGTCACTTCTGTCTGCTTCTTGGCCTGACTTTTAGGATCTGTTCCCTTACACAGGCAGAAGAGAACAGTTAATTGAATCTATAACCTTCCTCTCTGGGCTTCCATCCCCTGCTCAACTTTCATTGCTTGAGTGACTAGCACATTGTACATTGTTCTGGTCAGATATTAACCAAGTCAGCTTTGGCGAGAGCTCAAGAGTTAAAACTCAAAACTGGCTTCAAATTCTGTCTTTGCCACTAACCAAATGTGTGCCCAACAGCAAGTGATTTAATTCCTCCACCAgatctgtttcttc---ctcttcaaaGTCGGAATAATTGTTACTTCGTCAAAGGTTGCTAA

a score=35862
s chr3           152091768 2629 + 160039680 GTACATTGCCAAAGGGAGCAAAGATCACAAACAGATG---TTTCTGCAGGTGTGGAGACGGAATGACCTGAAGAACTGACCTTGTTATTAGTCTCCCAGTAGAGGCAAGAGATGAGAACATTCCAGAGGGAATTCTCTTAGTGTGTGCAGCAC---CTGGGTCCAGCTGACACCCTTGGTAACAA--GTGACCTCCAA-ATTCTAACAGACAAGAAGAGGTGATGCTGTTCACGGACACTGGTGCCTTGCATACCCAAGCTCTACAAAGATCACCAT--------------------GACAGTGGTTTTCTGT----AAGACATGGGGAAACTGA------------------------------------------ATTCTAGTCTTCCTGAAGACCTCCAAAGGAGAAACA--------TATACAGCCCCAAG----------------------GAAATTCTCT-------AATTCCTacac-----------actcacac--atactgacacacactca------------------------------------------------------taaactctcgtacattcacattcacacagt------cttactcaaacacacacatacacCAAAAAAATCATAATGATGATAAAAAAATACAAT-AAACATTTCAAATCTAACATCTAGTGACCAAGAATTTATATTTTTGCTATTGTTTAAACTACGATGTTTCCATGGGCCTTCTACTTCGTCTGGTAACTTTACCGGTCCTAAAACACCAGCTCT-CTTTTGTGTCTCCTAA----GTTATAGGCATTT-------------CTGGAACCTCCACAGACGACTCGCTGAACAATTACTAACAGACCACAGCTCGAGCTGAAGCCTATTTTCAAATA-CGCACAACAGAATTAAACGGTCTGTATCCTACGGGCTGCTTGTGCTTCTCGCTAA-GGATTCAAATCGCTCCTGTGCAGGGCGCAGATTAATAAATGAAGAACGTGAACCACAGCGCCGCTCTGCTGTGACGGAGGAG---ACAG--CAAAAAGTAACGTTTTTGCCGAAAAGGACAGAGTTACCGAGGCATTAACCCAGCATGAAAAAGGCATTCCTTCTGGTTTGCCGGAGCACGCCCTC-CTGGTTATCATTTCTGATTGCTGCCGAGGTGCTCTGCATCT-TCCATCTGAGGTACCGGAG---TGCCTGGCCACGCCCTCTTCCGCCTTACTACATGATCTGCGCTGGGGCCGGTTCTTTCCATTCCTCTTACATCCGTGAAATGCCCACGGAG---GCTTAGACTGACATTTCCTCTCAATCTTCTCAATCAAGCAAGGGTCAGAGGAAGGGTGCCGGGCCTCTAAAAGAACAGGTGGACGCACTCTTCCATTCCGCCCTCCTCCTCTACATCCTTCGGG---CAGCCGGTTCCTGGCAGCATTTCCTCCGATGTTTAGGAAACCGAAGACGATTGCTGCTTAAACCACATGCTCACGCGCCAAAGACAGCA---------------TGTCAGA---------TTTTAGAGTAAAAACGCTACAAA---TCTAAGCACTGGCCTGGAGGCCTTAGAAGAGTTAGCAGACAGAGGTTATAGGTGAAGAAAGTAATAATAGTTAAAGGTCTGAAAAAAACAAAATCA-AACACAAATGCTTCTACTTGTCATGTTTATACCTTGTactcatgtacacacacgcacaccggagcacacacaggcccgcacacacattcgtgcacacacaACAATTCCAACCAATTGCTTTTAAGAGCAATTTAAAA-----AAAATCAACCCTTGTTTTACAGAAAATGCCCTACAAACAATGAGTCAGATGAACACCTCCTCCTGCTCATTTAAAAATGAGCACCAAACTTCT-----AGACCTGTGGCAGACATCATCCACGGTCCATTTCCTAAACTCATCCTGTTCATGTTAACATAACAAAAGGAAAATGCTATGGGGTGAATCAGACTCTGATCCTAGTTCCCGTTATATTAAGATTATGAAGAAAGGGGTTCCCTGgagacagttcagcacttgaccacactggctgcttttgaagatgacccaggtgcacgtccaagcacccacgtggcaggtcacaactgcctgtcactccagtcggagagttacagatggttatagattccctcttctggcctccttaagcacttcatgcacagggtgtacaaacagttaagcacatatatgtaacaataaatataCAACTTCAAACATGCTCATAAACATGCAAGATGTTGAAGAAAAATACCCACAAAGCTGTTGTAATCAAGTATTTTATGTGGAAAGAGCCGTGGGTACAAACAGGGACCAAAATCACCTATGTAGAAAGATTCC-TCTAAAAATTTT---AAAGCTTTTGAACAAATATTAAAATGGATCACACTTTA----ATTTACCTTAAACACACTACATAAGAAACTATATTAAACATCATCCATAAATCAAAATTACATTTCGAAGACTGTATCTCATACACAGGAGGCTAAAGTAGAGTTCATAACAGTGTCTAAGACCCCGGAGAAGGCTGCCTGC-----------------------AGAACTGTGGT-CATCTCT-----GCAGGAACACGGGCCACGCCATCATCTTCCTTGTTTCATGTCACTGATGGCTCCCCACACGTCGAACAGGAACTCATCAGGAAAGGCAAAGTCTCCCAGAGTCTCGTCAAGAGCGACAGCAAACTCATCTGGGTTGCTCTTGTCTTTCCCAGCTTCAAACATGGTTGTAGCTGTCAACGATAATGTTTAAGA-ATCGATGAGCCATGAATTAGC-ATCAGAGGGCTGATA-AAATGTTAGCAGGACCATGACTACTTACCCCAAAGCAACACACA
s HiC_scaffold_1 138811532 2561 + 233722169 GTGAGTTGCAAAACAGTACAGAGTTCACAAATACATGGGTTTTTTTCAGGCGTGGGAAGAAAATGAC--GAGAAACTAACCTCATTATCAGCTCAGCAATGGAAGTGAGACATAAGGACATTTCA-AGGAAACAGCTCTGGTATACAAAGCACTGACTGGGTCTACCTGCT--TCTTGGTAATGACAGTGGCCTACAAGACACTTACAGACAAGGATAGTTACAGCCGTGCGTGGGTACAGCT-CTTTACA-ACCCAAGTTCTAGAAATGTCACTGTAGAGACAACATCCCCCGGGAGACAGAGCTCCTCCTCCcccaaaaaaaggagaaatccaTCAGTAATAATAAAGGAGCACACCGGGCGATGTGCAGCTGTCATTCCAGCtcccagggaggctgaagcaggaggatcacttgctTCTCTGCAAGCTCAAGACCAACCCAGACAGAATGGCAagaacttgtctccaaaaaaattaactcaccgggcgtggtggctcacacctgtaatcccaagcactcaggaggctgaggcaggaagatcgttgcgagttcgagaccagcctaggctacaaagtgagctcaaggctagcctgagctgcacagtgagaccctgtctcaaagagacaaaaaaaaaaaaaaaaattaactcatactgaaaa----caatgaaacatttcAAATC------CTAATGCCaaaatctttatattttcatcattCCTTCAACTGAAATATTTCTGTAGGTCTTCTAACTCATCCAATAATTTTTCATTCCTAAAAATATCAGCCCTGTTTTTATGTCTAACAGAGATGATATTAACATTTAACTGGAATTAAGCTGGAATTTCCAAAAGAAAACCATCAAACAAGTACCAACAATACACAGC-CAAGCTGGATCCTACTCTCAAATGGTGggcacagaaataaaacaacccaTATTCTAGACGGTATTT-TGTTACCCAGTGACAGTTTCAAA---------------------GTTATCAAACAAACACTGTG-------GGGTTAAGCTTATGTGACAGGGGAGTGGACGGTGCTAAAAGTAAAGTTTTACCAGAAAACAACAGAGCCATCTAAGCAGTGACCCAGCAGGAAAAGGACACTCCT---GATTTCCTAGAATACTCTCTTACCGGTTATTATTTCTGATTACTGTGGCAGCACACAGCGTTTCTTCCTCTAACTCTTCAGAAGAATGCGTGCTTGCATCATGCTTTGCCTTATTAAATGGTCTATTTTGAAACcattcatttctatttctcttgCATCCAT-AAATGTCAAATAAGAGTGATAAGCCTACCATTTACCCTCAATTTTCTTGATAATGTAAGGTTTGGAAAGAGTGTGTTAGAACTCCAAAATAACAGACTAatatgttttctcctt------ttctcctgcaTTTCCACTGGGGGGAAATCTATTTCTGATAATATCGCCTCTGAAGTTTAG-AAGCTGAAAAGGAT-GCTGCGTAAgtctcccctccccccaaaaaagacttcaatcatagttattttctttcaaaagaaaatatctttcaaagaAAAGTACTACAAAGAGTCCAAAACCTTCACTGGAATGCTTATAAGAGGTACATAAAAGTAGacatgaatgaaaaaagaaataatattttaag-------aagtaCGAAACAAGAACACAAATGGTTCTA----TCCTAATTACCTCTTCTTTATACTTACACACcaacatat------gcacacatgcacacaagcagttacaaacacacacaactaTA----------AGTTCTAAGAGCAAccacaaagaagcaaaaacaaaatcgattttttaacaaag-------aaaaaacaagccaAAGGAAT-CTGCCTTCCCTgaattgataaattttaaaaaagcttttttaaaaaatgtgtaaatcACATT------------TTTTCAGAACATATTCTACTTACGCTAGTATAACAAAATTAAGATGTTATGAGATATGCCATACTCTAA----AACTTTTATTGCATTAAga-------------------------------------------------------------------------------------------------------------------catcattaaaaaaattacaaag---------------cttcTACCATC---AATTACTTAATG---------------------------------------------------------------------------------TGAAAAACAAAGCCCA-------GGTGTA---------TTAATGAGGGAAG------------------GGGACAGAATTGTCTGTGTGGAAATACTCCCTATAATGgcctttaaaaagcttttgaatgAAAGTTAAAACAGatcatattttacataatttatctTAACCATACCACAGAAGCAAATGCATCCAAAAGCATCCAGAAATCAAAATTATACATCAAAGAATGTATTCCATACACATAA--TTAAACCAGAGTTCATAAAGTCGTCTAAGAATTCTTAAGGAGTCACattcttggtttgtttgtttgttttttaagaacaATGGTTCATGTCTTCAGAGCAGGTTCAT---CCACATTAAAATCACTCCTGTCTGGCGTCACCAACAGCCCCCCAAACATCAAAGACAAACTCATCAGGGAAAGCGAAATCTCCGAGCTTCTCATCCAACGCGACAGCAAATTCATCTGGATTCCCTTTGTCCTTTCCGGCTTCAAACATCGTGGTAGCTGTCAATGACAAAGTTTAAAACAATAATCAGAAAGGAAGTGGCGATCGGAGGCCTGGGAGAAATGTTAGCAGGAGGCTGA--ACTT---CCAAAATAACATGCA

a score=7030
s chr3           152095707 880 + 160039680 TTTTTAATAGAAATCTACTCCAGA-CTCCATTGACTTAT------AAGGGGCTCTCCACACTGTACACTGTTT---CACTGACCAATGAAAGGAACCCAAGCA--AGAAAGATGT--CCCTCACTA-TGAAACATCATTAGTATATACCTTTCTAACCAGCTACAAAAGGAATCAAGGGAAAAATAACTTAGGAACTACCATTCAAATCGCCTTCCCACATATTTCT-GCCTTTTTAATAGGATA-AATTTCTAA-ATTCTGAAACTGACAGAATTAGTTTCAAAATCCTATATTGGTATCA--GAAGACACTGTAGGTCCACAGGCAGTTAGCT--GTTGCCTTAAA---GCTTCCAGAAGGAACTGTAAGGCGTGTCCTTGAGTTAGATCAGTCCAGGGGACTCAGCGACTGCCAGAAT-----------CTCAAGGTACTCCATGATAGC-----TTGGCT---------CAGAGCTTAACTTTACAGCCAC-CGAAGTACATTCA----------------TCCTACAAAGACTCTTATGT-AATTGGGTGTggcagtgaagcatgttgatctctgagtttgagtccagcctggtctacagagcaagttccaggacagccag-----------------ggctacacagagaaactctatgtggaaaaac-caaaGTAGGGGAGGGAGGAGGAATGAaggaagagaggacggaagggagaaggagagagagagagagagagagagagagagagagagagagagagagagagagagaggTTCTGAAAGCAAAGAATGCTGGAGATGCAGGTATCAGTCTTGCTTGTCTGTTACATTAGTCTCGCATTTCTGAAGCACATTTCATGCTAATTGTATCTGAACAACAGAAATTCCTCATTTAACAACAGCTGGCATTCTTCAAATATTACTTTCCTTCCTCTTTGCCTCCCTAAGTGACTGATCA
s HiC_scaffold_1 138821149 862 + 233722169 tttttcaggaaaatctattttaaaacttcactgctttatctcaaaaagaaattctttataaTGTGCACTGTTTTAGCACTCGCTGAATAAAAAAACATGACCCTTGGAAAAATGTAATTATCACTAGTAAAATGTTATcattgtacatttttttaaa-aattatata--gttttataagaaaagca-CTGAGAAGCTAATATCTAAATCTCTGTTCCACACATTTCTCAATCTCTTAATTAAATACAACTTCTAACATTCTGAAACTGCTAGTAGTGG-----AACTCCTAAATTGACATCATCGGGAACACTATAATTCTGGATAAAACTCACACAGGTGCATTAAGTATGCCCCCAAAAA-AACTACAGATCACTTTAGCAAGCTGGACCAAG--------------GTCTTCCAGAATTTACTTTTCCCCTTGAGGCAACTTACACTGGCACTGATTGGTTGAAAAGTCACAAAGCACAACTTTACAACCAAATGAAGCACTTGCCAACCAGATGAGCTGCTTCCTAcaaaacaattcattttaattG--TATGCCATTTATGAATAATAGATATTA---TTTAACCCATTTTGGTATAGCATTCTATTTACATAATTTCAAGTTGatgtcatttttaatgttttaatataaa---tttacattaaaaggCTCAGCATAATATATCAATGTAATTTGCattaaaaaatgactt------------------------------------------------------------------ttctgAAAGCCAAGAAAACTAGGCATACAggtaaattattcatttttctgttaaattAGTCTTACATTT-GGAATTATATTTCTTGCTAATCATATCCAAACAGTACAAATTCCTAATTTAATAGCAGCTGATACTTTTCAACTAATCTGTTATACCCCACCTG-----CTAAGTCCCTAATCA

a score=17197
s chr3           152101771 1183 + 160039680 cttccgagccagctctccagctccA---gagccagccatttttgaagacaagatccacctctggatgttttagttataaaaaccacaaatttctcttatttttttcccaccttaaatatagttggaattgtttttttgttttgttttgttttgttttttgctttagttttgttttgCAATATTTGCTACCGGTAGGGTAGCAAGCACAAACCTTAGTTAATGAATCAAGACCTT-GTCATGTTAATAGTAACATTAAAAAATTACCTAGGAAACACCCAGAAATCCTAGTGCCAAG----CCAACTGTTCATGAATTCTGAGTTTTCTTCTCCCCTAT---------------TTCAGAA----------ATCCTATTAAATGATG----------------TACAAGTGCATAATGTAATCAATGATCAATGTAAAGGTGGCACCTCAGGTAGGAAAGCTTTCCATATGTATCATTTATTTATATATTTTCATATATAGTTTAATGCACAGAACATGGTA-AAGGGGACATTATTATTTGCAGTGTCTAGATTAAAATTTTACTAAATTttttgtttgttttttgaggtagggtttctattatgtagttatggctgtcc--tggaacacacagtgtaaaacaggcccgccttgaactcacagagagccacccat---ctctgcttctc-------------tgagtgctg------agattaaaggcatggactacca--------------cacccagTCTAGA----------------------TAAAATTTTAAAAGTGGATTTAGCACCAATATCTCACGGCAAGGGACAGG-GTGAATCATTACTCTTTACTGTTTTTATGTTC--------TGT---TGTACTCCACAAATCCTTTTTATCTTGGAAGTATAACTGGGCATCATTTGTACACGGCACGGAAGTTTTCGTTAACAGTCTTACCTAAGTCAATATCTCGAATCCCCATGTACAGCTCAAGGAGATCATCAACCTTTCCGATTGCCTTTGCCTTGGCTTCAGAGGGCTGC----GAGAAGAGAAAGTCAAGATATT-GCATTCACAAAATAAAATCCCGTGGTGGTCGGAGCACACACAGCAGGAAGT---------AGCTGGCCCA------------TTAGCTAA--GTTTAGTGGACATATCCGGAATACAGCATGACCTTATAGCTAAGTGTAAACCAATACAGTAAATACT--TATAGTGTCAGCATTAAATAGTATGGATTTTTTTTCTTTAAGAAAAAGAAAGAAAAGGACGCCATTCCTAAGCTCCGAACTACCTCGATAGG
s HiC_scaffold_1 138822896 1196 + 233722169 CTTCTGGACCGGCCCTAGCTCTCCGAGTGAGCCATTCATTCTTCAGGACGAGATCGAGCTCTACACTTCTCAGCTCTAAGAACTA-AAATGTCTCCCTTTTTT------CCTTAAAC-TAGATGGA---------------------GTTAGGTtttctggtttggttttgcttttagtCATTTGCAACCGGCAGAGC---------------TAGTGGATAAATCAAAACCTTTGACAGCCTACTGATAAC-------------CTACGAAGTGCCCAGAAACCCAGCTGCTCAGTGTCCTCATCACTGATGTGTCCAGTGTGTTCTTTCTCTCCACATTCCTGACTCACTGTTCAGAGGGCTTCCCTCAACCCAGCAAACGGTGCCCAACTTTCATATCATAAAAGTGCATAATGTAATCTATG-------CAAATGCAGTGTATCAGGTAATGAAACCGTTCCTGTGCACCattcatgaaattattttcaggTATTTTTAAGCCTCCAAAACAAAATGGAAGGAAACATTATTGCACACAGTGTGTAGACTAgga----attaagatttttaaaagcg----GACGTGGCATTCACAC------GTCACAGCTGATCAATGGAACAAAC---------CTGGTCTTCGTT--ACTCTCCAGTATCTTTACGTTTGCTCTTCTTTTCAGCACTCCGTTGATGGTTCCTGTTGAAAAGTTTATTGGTTCTAACTGCAAATAAGCATTAGTTCCATCGAATTAAGAGttttgagactttttaaaatagtaaacctttgcaaaagggaaaaggaccaagagatggaggaggaggaaaggagaggaacat-----------GTCATTGTgtccacaataaatgtaaatagactcataaaat-------attttgaaa---taaatatgcatttttaaaaaatgaaacagta-----------tgGTCTTACCTAACTCAATATCTCGAATTCCCATGTACAATTCAAGGAGACTGTCAATCTTTTCAATCGCCTTTGCTTTGGCTTCAGAAGGCtttagcaaagaaaagaaaaataagatgttaACGTTTTTACACTGCAATCTCTTGGGCATCGGGGCACACTGAAAGGGAAATGAGATACAGAGCCAGTCCACAGTGATGGACTTCAGCTCACTGTCAGGTAAATATATGTAGAATGC------GCTTTCTACCTAAATATAAGTCAATACAGTAAATCTTACTTTAGCATCAGCATTAAGtattatggattttttt--------aaaaagccagaa----actCGGTTCCCAAGGAGTGAAGTACCTAGATGGG

a score=8039
s chr3           152105166 324 + 160039680 TGTAAGGAGTGGTAACAAGCGGCGGTGCTCCTCAGATACAAATGGC-----ACCAGTGTCTGGCCACTGCTTTCTGAAACAGCTCTTGATCCCTTGCCTGTTTCCAGCCACATCCAGTCGGCTTGGGTCCACATC-CTTTCCTTCAGACAGAGGTTTCCTATTTCCTTCCCTGCCATTCCCTCTCAAACCCATCCT---GCTCTACAGCGCATCCCCCTGAGCCAAGGAATTCTTCTAAAATACACAACTGACAGTGTTGCTGCCCCCACAGTTACCACAGAGCCTTCCACGCCCTCACTCATCTCTTCCTCCAGCCTCCTCGCCACCCAGCC
s HiC_scaffold_1 138825780 299 + 233722169 TGTAAGTGGTGGTACCATGCATCAGCACTTCTCCTACACAAACAGCTACCTGCCTTTATCTGTCCACCTCCTGCCAGCTCAGGACT--ATCTATCACCTCTTCTT--CCACATCCACTTGCCT---GTTTACTCCTCGTTTTTATGGGCAGAGGTCCC-----TCCTACCC-------CCTTCTCAAACTCCTCCTCCTGCCAAGCAGCCCATCCCTTGGA--------------CCAAAACACAAAACTGATGGTGT-GCTCCCCCTACAGTTCCTACAAGGCCTTCCACACCCTGACCACCCTATTCCTCCAGCCTCATCACCTCCTAGCC

a score=25508
s chr3           152107849 4189 + 160039680 [encoded data, 4419 characters]
s HiC_scaffold_1 138828718 3579 + 233722169 [encoded data, 4419 characters]

a score=24758
s chr3           152120657 1926 + 160039680 agaGATCCCTTACAAAAGTGAATGGTTGCTGCCATCATGATATATTGCTAGG-------------------ACCTGAGGTGA-----------------------GGCAGCAGC---AGTTTTTAACAAGC-GTCTGTTCTCACCC--GCTCTGCTGT--CCCTGTGTCCTGTAAGTTCCTC-TGTTGCTAAAATTACTCCTTGCAGAAAAG------CTACACCCTTGCAGTGACTGCACAGGCTGAAGGGTccttgtctgaaatcttggggtca-gaagtgtttcagctatcaggttttcagatctGGGGCCAGCTACATGTGTATGATAGGGTATCCTGGG-----------------ACACTCAAACTTTATTGGCATTTCATATACCTCT--AACTCACAACCTGAAGGCCACCATGAACATTATTTTTGATGCACCTGTGTTCTTACTGTGGCCC---------AACCCATTGGGACAGGTATGGGATTTTCCATTCCTAG--TCAGGCCTGGTGCTCAAGAACTGGCAGTTAGGAAACATTTCTGATTTTAGATTTTGAGATAAGGGACGCTTAACCT---GTGataacagctaactattattgaagatttg--atgtattaaggactaccgtaccacttttcc-----agtgtagtc--------ttcacaacagactaatgtggtcaagtctaatcggcatctttacttttggtgtagggaagccaaggcacagaaaggttaagaaa---ttcactcactcgttctcacacactcagcacctggcagagtgacagacctaagtattcATCTCATCTCCTGTCAGTTATTTCATATTTGTCCAGGGTAGTTTATAGAGTCCAGAGAACACAACAAACAAGCCAAAGTATTTGTAG----------TTGAATTTTTTAC------------ACTAAATGTAGCATGAATAGTCGACA---TCATCTTCTGAAGATCTGTGTAGCGTCTctgtaatacgagcacttagaaagcagaagccagggaattggctctgcaaaactggggccagcctggtctacgtagtgagcagcaggccagccagggctacatagtgagaccctAAGAAGGGAGAAGAGGAAGGGAATGCAGGGGTTGTTTTTTTTTTTTTTTTAATGTTTGAAGTTTAGGAAGTTGTGTGATGGAAG-GAGCATTTTTCTCCTCAGGTTTTCAGGGCAGCGTTTGGAAAGCTGAGTGAGCTAATGCAGGGCTGCTGCGTCATCTCCCGCTGTGTCACTCCAACAGTGTGTAACCACACTGTTCCACATACTTAACATCCCATTCTGATGGGTACATGTCGCAGAAAGGAAGCCTCTAAAAGCAGACCTGCTACAAAGCCTAAATACCCCCCAAAATCTAACCCC----CAGATGTCTTAAGAGGAAACCATTTCCTCCCAACTCCCCTTCTGACTTGGAAAACACAGA-----------TCTCCTTCTGGGAGCCTCCGATCTCAAAGGGTAATAGTCACATAT----------CTCCAGGATA----------AGACTCATTTAAGCAAAACAC----AAAGACCCTTAGCCCCAGTAGTTATGCCCACTACAGTTCAAAGGTCTCCTGGGAAAAGAAACTGGTCAGACTGGTCTGGTTTCA-AGAGTCATTTCAACAGGGTTTCAACAGGG---TTACACAGCTGAGGACAGTCTGGGTTTTCAGTGAGCA----GGGGTTGAGCTCATTGTGAAAGCTATGTCCCTTTACACTGGCACAAGGAGAAAGGAAATGAGCCAGGCCCTAAAAAATATCTTTGGAGACGTTGCAGCCAGCACGTGATAAGGGCT-GGCAGGCTGCCATGACAAGGGCATAGAAGACTCCAGCTCAGGAAAGAAAAGC-GGATCAGATAGCAACTAACCAGGGGAAATCACGTCAGGTATGGGGAAGGCGTCACCTCACCC-------TTCCAACAGAAAGAAGTCCTCCTCCGAGCAGCTTTCAGTACTATGGTTTTGCTGTGACTCTCCGTGAGAAACGGATACACGCTAATGTATAATATGCACTATTAATACACACAAACAAACATACATAACTGAAACA
s HiC_scaffold_1 138840742 1786 + 233722169 AGAAAGTCCTTAGACAAATGAGTGGCAGCTACAAGTACGATACACTGACAGGTTTCATTATCCCATATAAGACATGATGTGACCACCTGTCCTTCCAGAATCTAAGACAG-AGCCAGAGTTCTCAACCAACAGTGGGTTCTCAACCCAACTCACCTGCAATCCTGTTTCATGTCGGTTTCTCCTATTTCTAAAATCACTCCTTAAAGAAAAGGCTAACCAACTCTTCTTCA-CGATAGTACTCACTGACTACCCCTTGTCTGAAATACTGAGAACAAGGAGTGTTT---------GGACTTCAGATTTGGGAACATTTGCATATACG-AATGAGGCATCTTGGGTAGGGGCCCGAGGCTACACACACAAAGTTCATCTGTGCTCCGTACACACCTTACACACACAATCTAAAGGTTActttatacagtatttttagtgTACCTGTATTCTGACTGTGACCTCCAGAAGAGGTCACAAGAGATTAGGTGTGGGATTTCCCACTTATCACATCAAGCC-AGTGCTCAAAAA-----------------------GTTTTGGCTT--------GGGGGCGCTCCACCTAAGGTAAGGAGAGCTAACTTTTACCAAAGTGTTACTACGTATCAGGGACCATTCTATAATTTCTTCCATTGAGTTTAATCATTCAAGCTTCCCAACAGCCTGA---AGTTAAATACTATTATCATCATCACTCTCTGTAGGAGGAACCCAAGGCACAGAAAGGTCGACTCACTTTTCAATGTCACTTTATCACACACTCAGTACCTGGTAGAG-------CCCACGCACTCA---------CTGTAATTTGTCTCATGAGC-TCCAGTAAAGTTTGCACAATTTAGAGTACAAAAGGAGCAC-CAAAAGCATTtctgggttttttggtttgggttttgttttcttctttcttggctagaaataatatgaacaataaaaaaaattactttttaaatgtttcagatGTCTGTCTG---------------------AGAAGTCA------------TGTAAAATT-------------------TAAT------------AGCCAGAG---------------------------------------------------------TTTATCTCCTAATGTC--AAGT-----AGGCCCTGCCTTAGAAATGAGCA-----------------------CAACATT---GAAGCTGAATCA--TGAAGATGAGC--CTGAG--ATTTCCAGCTATG----------AATGACTCAC--------TTCACATACTTCACATCCTATTCTGATGGTCACACTGCCCGGAAACAAAGGCTCTAAAACAAGACAGAGCACATCGTT--------ACCAAAAATCTAAACCCAAAACAAATGTTT---------------------CAACTCCCTTCCTCATTGTGAAAACACAGAACTATTTCACTCCTCCTTCTAGAAACTTCCA----TAAAGGGCAATGGTCACAAATTAGACATGTTCTCCAGGACATGTGAAGTCAAGGTTCAGTTCAGCAAAGCCGCATGAAAGCTTCATTGATTTAACAGttcttttt-ctgaaacagaaATGTCTCCTAGGAAAAGGAACCAGTTGGAGCAGTGTGGTTTTGGATAGTCCTTTGGATAG------AAGAGTGAATTTTCATAGTCTTGGGAAATGTAGGTTTTCAGGGCAAACTGCAGGGTGGAGCTCACTGTG---------TGCCTTTTCATTGGCAAAAGGGGAAAGGAGGTGAGCCATGCCCTACAAAATACCACAGCAGACATCCCAGCTGATGCGTGATGCGGCCTGGGAAGGCTGCCACCGCACAGGGCTGGCA-------------GAAGGAAAATCGGGATCAGTAAGCAGCTGAGCAGGAGAAACCATGTGAGCTCTGGGAGAGAGGTCTCATTACACGACAAGTTTTCAACAAG--------------CGAGTCATGTAAACTGGTGGCTTTTTGCTGTGAGTCATAGTAAGAAAC--ATACACATTA---TATTATAGCC-------ATACATAGTCACAAACATTTGTAACCAGAACA

a score=4774
s chr3           152120834 239 + 160039680 ACTGCACAGGCTGAAGGGTc----cttgtctgaaat-cttggggtcagaagtgtttcagctatcaggttttcagatctGGGGCCAGCTACATGTGTATGATAGGGTATCCTGGGAC----ACTCAAA------CTTTATTGGCATTTCATATACCTCTAACTCACAACCTGAAGGCCACCATGAACATTATTTTTGATGCACCTGTGTTCTTACTGTGGCCCAACCCATTGGGACAGGTATGGGATTTTCCATT
s HiC_scaffold_1 207408861 238 + 233722169 ACAGTACAGGTTGAGGATCCATTTCTTATCCAACATGCTTTAGACCAGaattgttttgg---------------attttggaacaCTTGAGCATACACAGTAAGCCATTTTGAGGATGGGACCTAAAGAAGAGACTCATTAgtttcataaatacattatacACACG-CCTGAAGATTATTTTATACACTATTTTTAGTGCCCTTGTGTTCTGACTGTGGCCCATCACATGAGGTCAAGTGTGGAAGTTTCCACT

a score=23396
s chr3           152127146 1163 + 160039680 ATTGCATCCATTGCCCCGAGGAAACAACGTTAGAGACAAGTTAGAAGAAATATTTGTGTTATGAAGGCATCAGCAAGAACACAGGGTGTGTGGGGGCGAGGTCAGGGATGAGTCAGGACAGGTCCAGA-TGATCCTGCTGAGGATGTTTTAGCACTGCTGTGCATGAGGACTTCACA----CATTAAAATAGTGCGCTGAAGCAAGAGAAGCTGGCACATTCTCACAC-CATGGGATGGCCCTGGAGGTTTCACCAAGAGTTGAGACACAGCTGCTGTGGCTAAAACCAGATGTGACATGAAAGAGGGAGTCACTTCATGACGTGGCAAACTCTAAATGTCAAGAAGAAAGTGTTCTGAGTCTGTGAAACAGAGCGGATGACTGTGCTAAGTACCA----CGTCCATAAGAAGCCAACCTCTGTTGCTTGGGTCCCTGGGAAACAATTGTGGTTTGAAGAGCCCCATCAGAAATCTCTCTGCTCAGCACAGTGA------GACAATACAGCATCCGTTGGCAC---AACCCCACCTCCAGCTCCATCCCTGGACATCTGACTCTGCAGAACTTGG-----TTTAGAAA--AAGGTTCTTCAATGGAAAA----------CTTTCCTTTCCCTTCAG-AGTTACTTTCCTTCTAAGTAGTGCTGTCTGTAATATTCTGTGTTCTTCCCTAGTACA----GTACAGTAGACAAGATGGTATGCTAAAAGCACACAGCCCCACAG------------AGCAGTAT-----CCTGCCTCTTA--------------------------------GATAAACAAGGGGAAG----------AAAATGGTTTCTCTTTGTCTGTCTGTCCATCCATAtctctctctctctctctctctctctctctctgtctgtctctctctctctcacacacacaca---caca-cacacacacacacacacacacacacacacacaccacacacGGGCTCAACTTACCAAAAGCCTTCTTGGGTTCTATTAACTGCAAAGTAAAGAGCTCCTCCTTTTTCAATTCCTTTAACTTCTTAGCGACTTCAAAGTGACGCCACCCAACAATATTTTCTCCGTTTATACATTCGATATGATCCCCCACACAGATCGTTTTAACTGAGTCAATGGTGCTGCCATCTTTAATTCTCTGAAAGAGAGAAAATCAATGGTGATAT-CATGTGGAACTGTGTGGCTTT--ACCTCTTGTGTTCCTG-------------------CTGACATATTTACAATGTAGTTTAATGC
s HiC_scaffold_1 138846885 1201 + 233722169 ATTTCACTGGCTGCCCGGAGAAAAGAGCAAAcaagacagaggagaaagagggtTTGTGCTCTGGGAGTGAAGGGAAGAAAACAGGGAGGGCAGGGTGGTGGCCAGGCAAGGGT-------GGCCTGGAATGATCCTACTGAGAATGTTTCCACTCTGATGAACACCAGGCTTCAACTGATTTATTAAAATAGTGCTGGGAACCCAGGG--GCCAGCACATTCTGCCACTCATGAGGGGACCC-AGAAGTTCAAACAACAGTTGGAATCCAGCTGCC-TGACTAGGGGCAGCCAAG----TACAGATGG---CACTTCCAGA-GGAGCCGTTTCGCACTGCCCCATAAAGAGC--------CCTTTAAGACACCCTAGGTAATCATTTCAATCACCAGCGCTGTGTACAATGAGC--ATCGCTGCTGCAGAGGCC---AACAAATAATAGTCATTCACGGAGTGCAATCCAAACCTTCACTGCTCAGCAAAAAGAACACAAGGCAGCATGCCATCCCCCGAGACTGGGACCGCACATCACATGCAGCCACCAGACATCTGGCTTTGGGAGTCCACGGGCTCTTTAGACAGTATTGTTCCACAAGgcaatctgttttctttctttcttattccttTAGTAAATGTTTTCCTT-------GTGCTATC----GTTTTCTACATTCTTACCAGACATGTTAGGTACAGCA-ATGTGTTGATGTATTAAAAGTACAtggtgggactggggatttagctcagcggcataagcgcctgccttgcaagcaggcaatcatgagttcgatccctggtactgataaaaaatgaaaaggaccaaaaaaaaaaaagt------------acatggtaaCACATGACAGTA-----------CTCACTTCCCTTAGGTAAGAC------------AAAGAAAGACATTACAcatcacacgcacacacatgcatgcacacgcacatgctAC---------CAACTTACCGAATGCCTTCTTGGGTTCTACTAACTTCATAGTAAAGagttcctctttttttaattcctttaactTCTTAGCAACCTCATAGTGACGCCATCCAACTATATTTTCTCCGTTTATGGATTCAATATGATCCCCCACACAGATCGTCTTAACTGAGTCAATAATGCTGCCACTCTTAAttctctgaaagaaagaaaattagtggTAATACAAAAACAGAGCTACATGACGTTCGACCTTTTATGTTCTTGAGTTATCATATACAACATCCTGACATATTAACGATGTGCTTTAATAC

a score=14477
s chr3           152133562 667 + 160039680 GTTGGCTTTGTCCTTTCTTATCATGACCTCTGTCCGCAAAGGACCAGTGACTCGTACTTTGAAACAGGCACGTGTTTGACAAG------AAAAAAGAAAATA--GAAACAGAAGCTTGGAATGTCAGAACAACATCTGACATCTAAAGCACTAGGGAAGCTTCCGAGCCCTCCTCTGCAGAAGTAGGCAGGCTCTGCTG--CCTGTACCTGGTGTCCTGAACTTCCCCTGGACTCTCCCACATGACTTTCCCAGCTCAAGGGTTTTCCATTTGGTCACCCACTCCACCTCCAGTGCATTGCTATCTTCTGCAGAGCTAAAAATAACCTTCCGATCGAGCAGGCAGTTAGAGAGGCGTCTACAGC-TAAGAGAACTTCCCTACGGTTGCTTCTTTAACAATGA-----TGGTGCACCAG-------------CAAAGAAATCCGTGATAAACTTGCTGCGCTGCGCAAAGCCTATACTGAATCTtagctcagcgcatagaaat-gccagctctagagtcagactccttgggttcaaatcccgaacctgcccagccttataatttcgaccaagctatttaaccgtcctcatcctGTCTTTGTACT-------------TTGGTAATACTGTCCACCATGGACACATTGCAAAG---TCACACCGAGAAAAGCAGAGACTGCAGATATGTAATGCTTGATTTTATAAATCTCAAGA
s HiC_scaffold_1 138853211 674 + 233722169 GTTCACTTTCTTCTTGGTTACCAGGTCCTCTGTGGCCCCAAGACCAGTGACCAGTAGTCTGAAGCAGACACAGATATGACAAggcattaaaaaaataacacaacgAAACA-CAGCCAGGAACATCCAAG-----GCTAACATCTAAA----------AGCTGCAGAACCCATCTGTGTGGACAGAG-------CTGCTGTTCCTGCACCTCCTGTCCTGTGCTTCCCTTGGGCAACCCCACGTGACGGTCCCAACTGCCAGCTTTTCCATTTGGTCACCCACTCAACCTTCAGCACAGTTCTCTCTCTTGCAGAGCTAAAAATAGCCACTGTGTGCAGCAGGAAGTGGAAGCACCCTTTGCAGTGTGAGTGTGACTCTCTGAAGAGGAGCCGTTCGTGATGACCACCTGGTA-ATCAGGGTTTGAGCAAAATAAAGGCATCT------AATGCCCTGTGTTTCGTGACTCTGTCACCAACTCCTAGCTCAGGGTGTGTGAGTAGCTGGCTCTGGAGTCAGCCTTCTTGAGCTCAAATGCTAGGTTTGTCCAGCAGTAGACCTTGGA-CAAGC---CTAACCTACCCGATCTTATTTTTATACCTGTAACACAGGGGTTGCTAATACTGCCTGCCCTGGGAAAATCTCACAGACTTCAAGTTGGACAGATTGGAAAATG-----ACATAATGTATGATTATATGACCTTTGAGA

a score=17184
s chr3           152136683 1164 + 160039680 AAttgtgtttgtcctggacatatacagacattccttggtc----tctaagcaacgtgatacagtaactatttatata----------------gatgtcataagaggtctagagatgctttaagctatccagcaggatgtacacaagttatgtgcaaa-tgctaagctatttgtattatacacttggacaggcacagattttagcatgctcaggggttcctaatccaaccTGTTTGGacacacacacacacatacacatgcacaGGGGATGGGGATGGCTATACTCATTACAGCGcacacacacacacacacacacacacacacaGAGGATGGCTTGGCTGTACTCATTACAGCAGAATTTTTACTTGGCTATTCTCAC--TTTCATACTATTTTAAACTTTTCC---------TTACAACTCTATATTACTCTTTTTTGTATAAAAACAAAAGAATTAGATTATTGAGATAACTCTAAAGAGTATCTTCTTTaaaaacaaaaacaaaaacaaaaaACCTGTACagctgggcagtgatggcacatgcctttaattctagcacttgggaggc------------agaggcaggcagatttctgagttagaggctagcctggtctacatagtgagttccaggacaggcagggctatacatagaaaccctgtctcgaaaaTCCCCCCCCAAaaaaaaaaagaaaaaaaagaaaaagaaaagagagagagagagaaagagaagaaaagaaaagaaaagaaaagaaaagagaagaaTTTCAAAAAGTTTTTCAAAAGTGTTGTCTTCAAACATCTTTTAAAATAAAAGTGAAA---TACCAATTTGTGAACCCCATCTGAGCTGGCTAGCTCTCCCCGAAGAGAATTTGTAACTCTCTTTGATATGAAAAA---------------------------TTGTCTTTTTTTTTTTTTT----CAAAAGCTTACCTTGATAAAAGCATAGCCCACGCCGTTATCCGTGATGGTGAGTCCAAGCGAATCCTCTGATTTATAAACATTCACTTCCTTTTTTGTGCCTTTCACGTGGGCAAATATGAAATCCTCAAGGCCCAGCTGCCCACCCAGGAGCTTTCCCATGTCAATTTTAGGCGTATTTAAGGTACAAAATAAGATCTGCAAAGAGAGAAAAGAGCCTTTAGATTAGTCTTCAAC---AAAACACCCTGACCACTGATGAACTTATTCAATAAATATGTATTGAATGA
s HiC_scaffold_1 138854312 1040 + 233722169 aactgtatctgtactgaacatgtacaaaCTTCTTTTCATCATGCCCTCAAAAATACAGTGCAACAACTCCTGATACAACTTTACATTTTGTTGGGTGTTACAAGTAATCTAGAAATGATGTAAAGTACACAG-AGGGTACCTACAGGTTATATGCAAAGTGCGATGCCATTTACATAAAAGACTTGCATAATCA--GACTGAAGCATCCACAGGAGCTTCAG-------------GAACAAACTCAGCCACAGCCA-------------GGGGAACAAATGTCCTTGTTACAAC----------------------------------------Cgggttattttcatt---------ttcctgctcCTTAGTTCTTATGTCTTCATACCATCCCCAACTTCTTCCTCTTGCCTTTGCAGTACTGTACTA---TCTTCTGTAATTAACTACAGAAATCACCCAACCCAGATCATGCAGACAAGCA-CTTTTAAAGAACCAAATGAGGAACCCAAAAGTCTGTG--GCTGGA-AGCAGCACCAAGTCCCAGGGACTC-AGCAGACGGGAGGCCACAGACCCAGAAGAGGGAAGCGG----CTGGGCAGTAGGCTTTCCT---------------TTTCAGGAA-------------------------GTCCCG-------CACTCCAG---------------------------------GGGAAGTTTAAACCGAAGCAAGGAAAtgcagcaaaaa--------------tttaaaaacc--------agagaTGACTttggatattttttaaattaaaaatgaaccaTTACGAATTCATGCTTCCCTGCTGA-CCGCCT--CTCTCTCCAAAGGTCGTTTG--ACCCTGTATGTTTTCTTAAAGGCCATCCTCACTTTTGAGGCCACCTGTCGTCTCTTTTGTTGTGTTGCCTTGTGTTCTTACCTTGATAAACGCACAGCCAACACCATTGTCCGTAATGGTGATTCCAAGAGAATCCTCAGATTTATATacattcacttctttttttaGTCCTTTCACGTGGGCAAATATGAAATCTTCAAGACCTAGTTGCCCTCCTAGGAGTCTCTGCATGTCAATTTTAGGTGTGTTTAAAGTGCAGTACAAGATCTGCCAAGAGA-AAGAGGTATTTTAGGTCAGTTTCCATTAGGAAAATATC----TCAGttgtgaatttatttaaaaaat---tatgaaatga

a score=29995
s chr3           152142788  993 + 160039680 AATAATTGAAAAGCTTTCTTTTAATGTCATTTCTGGTAATTTTAAACTATTT---AT----------ATTCATTTCTCTGTATTAT-AAACAGTCATTCCCAAATCTCCTGCCTAGTATTTTCTCACTATAACATACACATTAAATCTCTAGTATTGATTCAAATAGTGCATCATGCTATATACACAGAG-------CCTTAATACCTGTAGT-CACTAGAAACA-----------GTTTCACAGCTTAGAAAAGATATAAAATTGGCAACAAGGCAGACATTTAGAAACATGATACTGTGTGCTTTATTTAGACCCTCATGAGGATATTGTAGAAAGCCCTGCCTCGAACAGGGTAGAACTTTCTATAAATGATTCACTTCTAAATTAGCCTTCCGAGGTCAGCAATGGCAAGCCTTAAATAAAAAGTGAATCATTCTGTGTAA---TCCTTGGCCCACACAACCACTACTT--CCCAGTGTTCCTAATGACTAAAATAGTATGACAAAGGAATTCTATCAAAAAAAGAAAAAAAAAGTCAAATCCATATTTTTAAACCACCAGATGACTTCCCAGAATAACTGAAGGAACAAATTTTTCTGCTATGAGGTCTAATTGAGGGAACTACTTATCCAAGAAAATCAAAATCGCAAGGCAGGTCCTGAG---ACCCAAGAGAAGGGCAGGAGAAC----TTGAGTTTTAATCTTGCCTGTGTGGTCACAACCCAGGCGCTAACCCAGCAAGTGAGACA--------------------------ATGACCTCTCCCACAATATCCCTACAAGGAGAGGAGATAGGTTAGCTTATCCCATCTGAGGAATGT---AAGCTACTTGCCAACTTC-AAGACATCATAAATCAAAC-------------------GGTGCTTCTG--TTTCCTGCTTTCTGAACCAATTGTCTTTCTTAACATGTCTTCCCCCTTGTTGCAGAAGATGGGGAGGAACAC-AGCCAGGCGAGGAAACTA------GGTCAGTAGTTTACATCCTGGCACAGTGGGATGGCATAT-AAGCATTATAGA-----------------------------ATTTGTGAACTAAGCTCTCCAGTCACCA
s HiC_scaffold_1 138867079 1099 + 233722169 aattactggaaa---tactttttaaaacatttcttccagtttaaaaatatcttaaattgactagttaattcatttatttgtatcattAAACAATCACTTT-AAACCTCATACTTA-----------TTATAACATGAGCTCT----CTCTAAGATTTGGTCTAA-ACTCTACTGTGCTACATGCATACAGTGCTTTGCCTTAAC-CTTGTATTTCACTAGCATCATCCAGAAATGGGTGTCACCACTCGGAAAAGACAGAAACCTGGCCGAAAGACAGATATATGGAAACCCGATACCAAGGGCTCTATTTAGACC-TCATGAGAGTATTGTACAAAGCCCTGCCTCGAACTGGGGAGAACTTTCTATAAATGACTCACTTCTAAATTAGCTGCCCTGGGTCAGCAGTGTTAAGCCTTAAATAAAAGGTCAATCACTCTTTGCACGCTTTCTTCTCTGGTGTAGCTCTTTTTTTACCCAGTGTTTTTAATAACTATAATCATATGATGAAAGAATTCCATCCCAACAAG----ACACagtcaaatttatatttttaatctaccCAGTGACTTCCCAGAATAACCAAAGGAATGGTGTTTTTTCTAATGAAATCTAACCAAGGCAATTATGTATCCAAGAAAATCAAAATCACCAAGCAATTCTTAAGAACACCCCAAAAAAGGttaaaggaatacaaatagaTTTTCGCCTTGCCTGTGTGGACACAACCCAGACACTAAACGAacaagtgagataaatcaaatgtCTAGCGCTATATATATATCACCCTTTCCACAATATTCTTGC-AGCCAAAGAGATATCTGAGCTTATCCTGGTCTAATAATGCTGAAGGTTAAACGCCAATTTTAAAGCCATCATAAATCACTCCTATTCCTCCCCGTCAGGAGCTGCCTCAAATTTTCCGGCTTTCTGAATCACTTGTCTTCTTTACAGCTTCCTCCTGTTTGATATTAAAGATAGTACAAAACCTAAAATGGGCAAGGAGAGTGTGGAACAGAAAATGTTTGATATCCTGAAACACCAGAGTGGTTTATAAAACATAATTGATATCATAAGCTGTAATTATTAGCAAAGAGATGTGTGAATTAAGCTTTCTAGTTAACA

a score=10907
s chr3           152170430 564 + 160039680 ATAAGACAATATATACACCATTAAATGACTCATAAGATAAATTTACTATCTTACTTTTCTCAGAAAATATAGCCTCTGATTACATTAG-------------CTTTGAATAAACACACCCCACCCTGCCCCACATCCCCACTGTGGACAGATTCAGTAAGCAAACACTTAGGAGAAAATAAACACAGGGTTTGTTAAATGCAATGCAGTTTTCCTTGGCTTGAAGATAGCATGTTTTTACAGTTGCATGGTAACCACAAACGACCAAAGATGACAGGGAGAGGAAGAAATAACTC--AGCTGAAATTCACATAAAATTTGCCAGGAGTGGTGGGAAATTGAGAATTGACA--TGTGGAGTAAAGGGGACAAAGATGGGATATGAAGCCTGCAGATCAGTAAGGGA------------------AAGAGATGCCTGGGAGTCTACTGCACGACTACTCTCTGTCTGGCTTGGTGCTCACTGTTTCATATGCAACACCTCTGCCTCGACTTGGAGGAAGTGCCGTGTTGTGAAGTTCTAATTACTATGCCTCTCCAAGGTTATGACAAATGAAACATTACAGAGGCAAGAACAAATCTGAAT
s HiC_scaffold_1 138891546 544 + 233722169 acaaaaacacacata-gCCATCAAATGAATTATAAGATGAATTTTCTAAC--ATTCTTCCCAGCAAATGCTGC-TGTAATTACAATGGGGAACATTAGACACTCTGGAGAAACgtgccctcctctccctcccgATC---------AGGAATCCAGCAGGCAAATCCTCGGGAGAAAATAAACACAGGATTTGTGAGCCCCGCTGTGGCTCCCTTGGGACTACAGATAGTGTG-TTTCAGAGTTGCGTGGCAACAGTGAGCAA---------ACAGGAGG-----GAAATAACTCCTAGCTGACActcaaaaaaaa-----------tagtaaaataactaGAAATGGGAACTGTAAAATAGAGAGATTAAAGGTAG---AGGAAGCCTCCGTGTGAAGAAGGAACACAACTGGAGTCTCAGTAAGTGCTTCCC--GAGCTCggtgagcacctactgtgtgtccGGCTTAATGCTCAGTGTTT-------GACTTATCTGCGT-GTCCCTGAGGAAATGCTCTGGCCCG-AGTCCAACCTGTTCTGAGCCTCCAAGGCTgtg-taaataaaaca-caaagaggCAAGAACAGGTGTGAAT

a score=101295
s chr3           152183897 3419 + 160039680 [encoded data, 4257 characters]
s HiC_scaffold_1 138913454 4029 + 233722169 [encoded data, 4257 characters]

a score=15020
s chr3           152186409 584 + 160039680 CTTACCTCCCGTAAACTAATTTTAGCAGTATAAACTATATTTGATCCGTCTCTTTTAAACTTGGGATGTTCTTTGTCTTTAATAACAAAAACAATGTCTGCTGGGATACTATTTGGTGTTTCATCGCCTTCCCTCGGAAAAGTGATTTTGGTGCCTTCTTTCCACCCTTTTTTGATCTCAATGGTGAGAATTTTGTCCTCAGATCTGTAACTCCTTCCGTCAGGATTTAATCTTTTTCGAGAAATCTTCATCCGTTTGGTGCAGCCACTATATATTTCTTCAAGCGATACTTTAAGTTCATGAATAATGGGAGGGTCTTG---TTTGAGACGGGAGGGTCCCACAGAATTCCTGTCTCTTGGATA--------------TCCATTCATGCTGAA---TCCAAAGGCACTAAAGGG------ATCTCCATCTATTTCCATTTCTTCAGAATCTCGACCTCCACCCATCCG------------TCTCCCAAAGAAGATTTCAAAAGGGTTGGAACCTCCGAAAAAGGCTGCAAATGTGGCATGAGGATCTCCGTGGAAAGTGTACCTGAAGGTACCTCCTTGTCCATCAGTACCTCCAGCGCCTCCCTTCAAGCCTGGTGAAGA
s HiC_scaffold_1 178302079 617 + 233722169 CCCACCTCCTTGAGGCTGATCAGGGCGCTGTAGAGCACATTGGTGCCATCCCGGCGAAAGTGTGCATGGGGCTTGTCCTTGAGCACGAAGACGATGTCGGCAGGGATGTTGTCAGGTGTGGCATCGCCCTCTTTGGGGAAGGTGATCTTGGTGCCTTCCTTCCAGCCACGCTTGATGACAATGTGCAAGATTTTGTCCTCGGTGCGCACAGTTCGCCCGTCAGGGTTGAGGCGCCGCCTTGTGATCTTCATGCGCTTGGTAGAGCCGTGGTAGATCTCCTCCAGGGACACCCGCAGCTCATGCACCACAGGTGGGTCCTGCACTTTGCGCCGGGGA-----TACAGAGGTTCTGGGGCTCGCCGAGGACCCCTACTCAGCCCATTGAAGCCAAAGCGGCCAAAGGCACCAAATGGGTCCTCATCTTCATCCACATCCATGTCATCTGGGTCAAAGCCACTGAAGGGCCGAGTGGAACGGCTGCTGGCAAAGAAGATATCGAAGGGGTTGGAGCCACCAAAGAAGGAGGCAAAGGTGGCGTGAGGGTCCCCATGAAAGGTGTAGTGAAAGGAGCCACTGGAGCCACCTGACGTGCCACCGCCGGTCTTCAGGCCTAAAGGGGA

a score=76720
s chr3           152191699 2623 + 160039680 TCTAAAAAGCACTGCCAAGAGAAAACGTAAAGAATTAAGAGTACCAGCTGGTATACTTGAAAACTCTGAAGTCAAACACGATTAATGAGCCTGAATCCTACGGCTTAACACAGAGGTGCACTTGAGCACTCCATAAGATGGAGCCAAATAACCTGCGTTTACACAAGTGGCTTT-------GTGGGAACTCACA-CACCACTC-----------------------------------------CACCTACTCAAGAGTGGCCAGAGTACTGGCACTGTCTCAAGAGCCTGCTCGCTCCTGAGAGGTCACACCACGGCATTCTCAACTGTGTGACCATGGGGAACAGACAGCCTCAA-CTATCCACATCTTGCTTCTTGTAATTACTCACTCACTTTGTAAGAACTTGACACTGTGGATTTGCACGAATTACA-ACCACAGGCAGCAGCATGCTTGGGACTGACCCAAAATTAAAGCAGGAGGAAAAGGGCCCACCACTGCTCTGAGTTGTCGGTTTAGTTTGCTTAATGCATGGCCCTGTTTGAAGGACTTCTAATTAGGGAAATCTGGTGTTTAAATGCTATAAACAAGGGGAAAACAGTATGTTTCCATAGCCACCGTGACTTAAAAGACATT---AGGGGAAGAATAATGCAAAAGAACTTTAG-TCTG-TTTTAACACTTGAAAACCCCAGAACTCACGTGAACTAA--TGCATGGTTGCCGCTGCTGCTGACTGACAATTTCAAAC-TCCTACTTTATGGCCACATTTACGACATTTATGGACATTTATGGAGATGCTGGACAA-----------AATTCGGAATGGTAAAAGGAGATTCTCAAAGGCTACT----------GAGCTCACTGAGTCCTGATCTCAGAAGGCAAGAAAAAAAGTATGGCTGAGGGAAAGGGCAGCTGTCATGCTT-CCTCTTCAGCCACATAGTAAAATTTCCAAAAGAAATAGTTAACTAAAACAAACTCAGTCATTGTTCCAACTAGGTGGCCATTTTGGGTTAgagaaggagagggagggcgggagggcggggggggggggggaggaagagagggagggagaaagagagagagagagagagagagaTCTTGTTCTCCTGGCACAATATTAACTGTTTATAATTAAGCTAAAAACTTGTTCTGGTATTTTATGACATCAGGGAAATTCTTTCCTCTCTAGGCAGATTGCCAAAAACAACTAGAAGCTAAATGCCTGTGCCTTCTGCTTCTACGACACACCACTCCGTCTTGTTCAGTTTCAACTAGCGTCGCTCTAAAAGG--------------------ACAAAAAA-----CTTCTTGTTTTTCTAAATAAAACATAAATGGCCCAGAATTTGAATTGCCGATCTTAAAATTTTAAGTGACTGAAGATTCTATTAATTCTGGCAATAAAATCATTAA-AAACAAAACAGGTTGCATAAGACTTTTAA-ACAATTCATTCACAGGCATGAGAATTTAAGGTTTCTTTTAAAATATAAAATGCTAAAACAATAAGTCTAACAGGAGAATATGAATAATACAATATTCTAAGAAAAAAACCCAC---AAAGACAAACATGACATTTCATTCATAGCT----------CATTCAAATAATCAAGGATTAAACCTTAGTTTTAACCTGTTATTTTTCTTTTTATTTTAGTATGTCTGATGTTCTCATGTAACGATAACCAGAAGGCTGAGAGAGAGAG---AAAAAAAAAAGCTACGATTCAGACACTGCCAAAGGTACAGAAA--TATGCA------GCTTACCTTCTTCGCCAAACTGATCATATATTTCTCTCTTTTTAGGATCACTCAGTACTTCATACGCTTCTGCGACCTCTTTAAATTTTTCCTCTGCTTGAGGAGATTTGTTCTTGTCCGGGTGAAATTTGAGGGCTTGCTTTCGGTAAGCCTTTTTAACATCTTCATCTGTAGCTCCTTTGTCAATTCCCAAAATGTGATAATAGTCTTTCCCCATTTCGAATGCCTTGAAATGAACTTAGATTTCCCTTTGTAAAAGAAAACAGCGTCCCCAGGCTTAGCAACACAATGATCCTGAGAAAATAAAGCAAGCTGGGTATCTTACAAGTTAAAGCAAATCAGCAACTCGGCTCAGCTGTCCAGAGGCA----GCAGGCAGCGTCTC--TATTTAAT----TCCTCCCCG-------GCAGCTCACTTACAGATAAATAGACACCGCA-CGGAGACGGCCT--CAGCTAGACCCTCCCACTTCAACTACGTGTCTCTGTACTTTCTAGAACAGCGAACGAACGAACGCTACAGGACGTCACTTTCCCAGCGGCCTCTAGGCAAAGTACTGAGCTGTGC-CTCTCCTCCTCCACGATTAACTATTCCCTTTCCTTCGTCCTAGCTGTACCCTT-TTATTTCCT--------------GTGGATTTAGCAAACCAG----------------------------CACAGAATGCC------GCAACTACATATACATTTACTCCATTAGAGGTAAAAAGGCAACAGAAATAATTATAGCCATTAGGCATCCCATGTTAAACTGA-TTATACAGTCAGAAAA---GCCCTCAACTTA-CAGTAGGTATTCTAACTTCAATTTCAAGTTACCTAGCTATAAAATGTGCAGAACTAAAATATGAGGTGTTTACATTTAAAATCTTCAAATAATTTGGGTCATTTTCAAAATTTCTGGGGTCTATCGATCTGAAAAGTGAGGGAGCCACTATATAAAATGTCACATGGTAAAAGGACTG------TTATAACATTGAAAA
s HiC_scaffold_1 138919778 2497 + 233722169 tttaaaaaatagttttaacattaaa-atcaagaa--aaatatatcatttggTG-ACTTGAAAATTCTGAAGACATATATCCTTAATAAACCTGAATCCTATAACTTAGT-CACAGATAAACTTGAACAATCAATGGGCTATGGCCAAATACCTTAGATTTAaaactggagttttttttttgatgagaatttacaGCGCAACTCTATGAATTTCTTcgcaaaattacaaaaaaaaaaaaaaaacccacctcaTTAAGAA--ATAGTAGTAAAGGTATCATCTCAGAA--TTGCTTGGTTTTAAAGAACCAGGTCATGGCATTTTGAGTAGCATGGCCACAGGGAACATGCAGAATAAAACCAGCAACTATTTGCTT--GGTCAATATTTACTC----TGTAAGAACCTGACACTGCAGATCCTCA------ACACACCAACATCAGCAGCA------------------------------------------------------GAATTTTCAATTT---------------------------------Ttggaaataaagaaa---------------------gcaaagggCTAACAAAAAGTTTTCATACCTATCGTGacttaaaagatattttgagagGAAAGCTAACAATCAAGTATCTTAggtctaattttaaaatgtgaaaatccCAGAACCTATAGGAATTAAAGGGTTTGGCTACTGTTCTTGTTATTTAGCAGTGTGAACTGTCTTCCTCTCCAGCTGCATTTAC-----------------AGGCAGATGATGGGCAACTCTTCCTTAAAATCCAGAATGACAAAAGAA---CCTTAAA--TTACTCCCCTTTCCCGTGTTCACTAATTTCTGCTTTTACAATGCAAGAAAGTAAGGCAGGGAGAGAAAAGGGAC-GTTGCCCTGCTTTCCTTCACACCTagatagtaaa-tttttaaaagaaatacttacctaaaagaaaatcagtaagtGT-CTAACAAGGTGGCCATTTTAGGTCAAAAA-------------CTGTATTTCTG----------------------------------------------------AGATCCCGTTTTTTTGGCACACAATTA-CTGTTTACAATTAAACTAAAAACTTGTTCTGGTATTTTATGACATCAGGAAAATTCTTTCCTCTCTAGGCAGAATGCCAAAAACAACTAGAAGCTGAATGCCTGTGCCTTCGGCTTCTAAGACAGACGACTCTGTCCTGTTCGGTCTAAACCAGCCTTGCTCTAACAGAGGAcggccaaaaaaaaaacaacaaaaaaaacttctttttgcttttgggaATAAA-TATGAACGAACCAGAATTTGAACTGCCAGCCCTAAGATTTTAAAAGACTGACGGCTCTCT--ATTCTGGCAGAAAATTCTTTAGGAAACAAAACAGGTTGCATAAGACTTCTGACACAATTCATTAATGGGCATGGGAATGCAAGGTTTCTTGAAAAATATACAATGTTAGCGTCACACGCCT-------------GTGTAATACAAAACGCTAA------ATCCCCCTCAAAAGGCAAACAAGGTCTTTCATTCACAGCTATGCAATTCTCATTCA-----TCTGGGAAGAAATTTT----TTCACCTATTATCTGTCTATTT---TTGACATCTGTGGGAACCT-----AATAATAACCAGAAGGTTGTGAAAGAAAgcctaaaaaagtaaataa--ataaaggcagtGCGGAAGAGTCAGAAAGATATGCACAGAACACTTACCTTCTTCCCCAAACTGATcatatatttctctctttttaggaTCACTCAATACTTCATAAGCTTCTGCGAcctctttaaatttttcctctgCCTGGGGAGATTTGTTCTTGTCCGGGTGAAATCTGAGGGCTTGTTTTCGGTAAGCCTTTTTAATATCTTCATCGGAAGCTCCTTTTTCAATTCCCAAAATGCCATAATAGTCTTTCCCCATCTCGAATGCCTTGAAACGAACTTAGCTCTCCCTTTGTAAAAGAAAACAGCGGCCCTAGTCTTAGCGATACAATGA-----AAGAAACAGAGCA----gggtattttaaaagttaaagcaAACCAGCAA-TCAGCT--GCTGTCTCACGGCAGCACGCAGACAGCGCCTCCGTATTTACTGTAATCCCTTCCGCCGCAGCGCAGCTCACTTACGGATAAATACACGCTACACCGGCGCCGGCCTCCCGGCCCGCCCCTCCC------ACTACGCGTCTCCGCACTTTCTAGAACAGCAAATG---------CTCAGGACGTCACTTTCCCAGCTGCCTCTACTCGAGGTACCGCGCCGCGCTCTCCCCGCCTCCGCGGTTAACTATTCCTTTTCC----TCCTGGCGCTGCCGTTCTCAACGCCTACTTAGGCGGCCGAGTAGACTGAACCAACCAGTACTTTAAAACAGAAGGTCCCCGCCCCCCACAGAAAACCCAGAGTGTAATCAC-TACTTATTTACTCCGTTGTAGTTGGAAGAGCAACAAAAATAAT------CATTAAGCAGCCTATGTTAAAATAAGTTACTTCATGAGTAAAAGTGCCTTACACTTATTTTTAGGTAT------CTTAATTTCAAATTATTCCATTGTAA-----------------------------ACACTATAACTTTTCAAAtagt----gtcattttaaaattttgtagagTCTGTCTATCAGACATTTGCATAAGTCTGTAT-Cccaatttcacattttaaaaagattatgaaatttatagcatttaaaa

a score=8871
s chr3           152193371 216 + 160039680 CTTACCTTCTTCGCCAAACTGATCATATATTTCTCTCTTTTTAGGATCACTCAGTACTTCATACGCTTCTGCGACCTCTTTAAATTTTTCCTCTGCTTGAGGAGATTTGTTCTTGTCCGGGTGAAATTTGAGGGCTTGCTTTCGGTAAGCCTTTTTAACATCTTCATCTGTAGCTCCTTTGTCAATTCCCAAAATGTGATAATAGTCTTTCCCCAT
s HiC_scaffold_1 178305315 216 + 233722169 CTTACCTTCCTCCCCATACTGGTCATACAGGCTCCGTTTCTTAGGGTCGCTCAGCACATCGTAGGCCTCTGCAATCTCTTTAAACTTCTCCTCGGCGTTGGGCTCCTTGTTTTTGTCAGGGTGGTACCTCAAGGCCATCTTCCGGTAGGCTTTCTTGATTTCATCTTCATTGGCCCCTGATGGGATCCCAAGAATCTTGTAATAATCTTTGCCCAT

a score=5437
s chr3           152193375 203 + 160039680 CCTTCTTCGCCAAACTGATCATATATTTCTCTCTTTTTAGGATCACTCAGTACTTCATACGCTTCTGCGACCTCTTTAAATTTTTCCTCTGCT------------TGAGGAGATTTGTTCTTGTCCGGGTGAAATTTGAGGGCTTGCTTTCGGTAAGCCTTTTTAACATCTTCATCTGTAGCTCCTTTGTCAATTCCCAAAATGTGATAATAGTC
s HiC_scaffold_1 127994432 209 + 233722169 CCTTCTTTGCTGTATTTGTCATAGATGTCCCATTTTTTAGCATCTGATAACACCTCATATGCCTCAGCCACTTGTTTGAATTTTTGCTCTGCTTCTTCTTTATTCTCAGGA------TTTTTATCTGGGTGCCACGGTAGTGCCAGTTTCCGGTATGCCTTCTTGATGTCCTCAGGGGAGACATGTCTCTGCATGCCTAGAACTTCATAGTAATC

a score=4499
s chr3           152193383 131 + 160039680 GCCAAACTGATCATATATTTCTCTCTTTTTAGGATCACTCAGTACTTCATACGCTTCTGCGACCTCTTTAAATTTTTCCTCTGCTTGAGGAGATTT---GTTCTTGTCCGGGTGAAATTTGAGGGCTTGCTTTC
s HiC_scaffold_1 224593805 134 + 233722169 GCCATGCTGGTCATAGATTTTCCGCTTCTTAGGGTCACTCAGTATAGCATGGGCTGTGTTGATTTCTTTGAAGATTTCTGCAGCTTGGGGGTCCCCTGGATTCTTGTCTGGATGATACTGCAAGGCCAGTTTCC

a score=35613
s chr3           152208550 2779 + 160039680 GACTACAGTGATAGTAATTGGGCCA-GGGCTGGAGCAGCAGGGTCAAAAAGTGCTGGACTT-----CATACACTGGCAAGAGTTAATACGGTCAAGA----------AAAGGCAGGGGCAGGGATCAAGGAAGA-------------GTCAGAGGTGTGAACT---------------------cagtgcctgaagatattttcagttatcacaattggtggtgcttaggagagggcaagtagtg--gccaaagatgctgcggagatattgtaccatgcaaagcatacagccaagaattacccagtccaaagtctctcagcagcattgaggataagaaaccGTAGTCTAAGCTGATCCCAAAGTATTCCATACTACAATACTCACCTTCCCGGTATGCAGTGTTGTAAAAAATGAGAAATGAAGGTC----CTTTCAATATTTAGAAAAA----ATCTAAACGATAATTGGTTATAGG----GGGAATAAAT------AAAACTCTGAATTATTTCAACCAGACATCTAACTAGTATACAAATCTAATTAGTGAATA----AAAACATCAATTACTGATGAGTAAATGCTATTTGCTGGGCAAACTTCCTTAAAAC--------GCGACTGAAATACTCTCATTAGCTAGT-------------------TTTCCTACATATTGCTATGATTAAATCTGTAGCCCAATACCTTTACTGTTTTTCTAAAT-------CCACGGACATTC----------CTAGACAT-------------------CCATGAACAGGT------------------------------------------------------------TAAACAGG-----------TCAAACTGAGCTATCAAAT---GGCTAAGACAGAGCTGGTTTTAAGAAAATCATGCT--GTTTGTATCTGCCAGCACCTGACTTAGTAACTGATAGTGGGT--------------ACTGGACACA-TAGTTTCCG--GCTATCGGAAAGCCAAGGGAACATATTTCTCTCATT----CTAAGATTGGTGTTAAGAAAAATGCTTCTTAGA------CTGAGAGGGGGGAAACGTCATACA--TTAGACAGTCCATTTT---GCCTTTTTCTT-AGCTAAACTGAGAGCA-------------GGGATCATTGTGGCATACTAAGTATAAACAGAATAAAGGCCCAAGAACCCTCATTCACCGTAGTAATTGCCAGCATTAGGCTAGCATGGC-TAAGACACGCTCAGGAATGGTCTGGAGAAACGTGGTTATT-GGCATATATGACAAATATTAGAAACTGCCTGC---AAAGCCAACTAGTCCAGAAATGAAAATTCAGACCATGACATTGATCTGACTACCCGCAGGGGCGCGGGGGGGGGGGTGGGGAAAACGCAGTAAAGCCGGTTTGTGTCAGGAGCATGACACGTTCGTGACATAAGGGGCACATGGTAAGACTGGCCAAAGACACGCAACGCTAGGTGTCTACATACTGGATGTGC----AACACTCACGTTTTTAAAGGACAAAGGGCGGTCATACTTTCACCATCCGCTCGCCCACACTATTTTACATAAGAGACTCAGTAGGCAATCGGCTCGAGAACTAAGGGCCCGGTGGTCTGAGTTCCTCCCCGCTTGTGACCGGCCCGGGTGGAGACA----TGGGCAGA-------------GGCAGCTCGGCGCCCCGGAG--CATGGTGGGCTCCCGCC--GCCGGGCCGCAGACGGTTCCGC-AGCGTCGCCGCG-GACGCCCCGCACGC--CCCGTGCGCGCGGCCCTCGGGCTGTGCGGCCGCGCGACACTGTTGCGT-GACGTCCCCGCCCGACGACGTCAGGCCCCTTACTACGGAAACACGGAAGGACACTAGCTAG-----CTCCCTGAT-CCGCGACGG--------------------CCTTTCCAAGTCCCCTACAAGCGCGGGCGGCACACTTCCCGGG---CGCCACTGCCTCA-GCCGCCGAGGCGAGGGAACAATGGCCCGCACTC-----------GCGCTGCGAGGAGGCGCCCAGAGAGACCCTACTCTCGTGGGAGCCCGG--TCAAGTCTCGCGATATTCTTCGCCCGGCGTCCCTTCTCTGTACCCTCCACCCCCTCTTCACCCCCCGCCAATCGCGCGTCAGCGCTGAAACATCGCGGGATTTCCGTCTGCCAGTCTCCGCCCCTTTACGGCACGATGGTCGTGCAAGAATGTGATAGAGCCTCGACGGCCGCCATCTTCTTCCTTTCTTAGCAGTTAACCGAGAGCGGCGCCTCCCTCCGCGAGGAAACGGCAGCGTGTGCTGTAGCGTGGGTATGGCCGACTACTCCACAGTGCCTCCGCCGTCGTCTGGCTCGGC------------TGGCGGCGGCGGCGGCGGAGTCGTTAACGACGCTTTCAAAGATGCCCTGCAGAGAGCGCGGCAGGTAAGCGTGGACCGACCGCGCGGCGGCTTCCCCTCCCCGA----CCCCCGAGA----GCCGCCGGCGGGGCAGGTCCGGCCCTGCTCGCACTCGC--------------------------GGCTGCCGCCCGAGGAGA-TGGCGTCTTCTCACGAGGGGTCCCAGCG----------GCTCGAGGCCGAGCCCGTTGTCGTGGTCTGAAGCGCCCCCCCCTCCCACGCGCTCTCCCCGAGCGTGGCCTCCACTTccgccccgcgcgcgcggcctcgccgcc--------------ccgTGCGCCCTGCCTGCCCCGG-----CTCCCTCGGCTCCGGTTCCGCCCG----------ACCCAGGCGCGTGGAAGGTTCTGG--------------------GCGCTCAGGTCACGG----CGAGGGCAAGCCAGGGAGGGCCGGCTGCCTGGCTAGCGGTCCCCGCCGCTTCCCGCGCCGCCGAG--CTCTCCACCCTCGCCGTAATTAG------CCTA----ACGTTCCCCGCGGCGTTCACCAGCGAG---------------GCTCTCCCCGGGGCGGGATCTGCGTGCGA---TCCACCAATCCTTTCCCCA----GCTCCAAATGGCCCCGGGCCCTTTCTTCCCCAGCCTTGAGTTTGAATCTGCCTCTCTCTTCCC-AAGTCGAAGCCT---CCAACCTCTTTGTGCTACGTAGG-GACGTACTGTTGCCTCGAATGGCAACCATTTTCCCAGATGAA
s HiC_scaffold_1 138941082 3015 + 233722169 GAGTGCAATGATGGTTATCTAGCTTTGGGATGGTGCAGTGGGGGTGAAAAGGAATGGGATTTAGAACAGGTACTGGCAA-------TATGGTCAATAGGTGTTCCCGAGAGGCAGTGACAGAAACCAACGCTGACCCACGCTTCTCAGTGAGAGGT---AACTTTGCCCTCCAAAGATCGTGTGCAATGTCAGAGGACATTTC---TTGTCACAA---GTGATGTTAAGTAGAGGG------GTGCTGCTAAACACACTAAAAA--------AGCACAGAAGTGAAACATCCCAGCATGCCTCTATTTA--------TGGAggaatccaccaaaaaaaaaaaaaatcttaa---atctttaaaaacccaacaacaaaaaactca---------------------------------aatgcaAGTCATTACTCTCAATATTCACAGAAATCTAAAGTAAACTACAGCATACTAAAAGTTTTGGTGGTAAATTGTATCAAAGTGGTACCTTATGTTGCTCAAAGGTCTGAGGTG-----Aagtctaataa---aatattttaaaaaatcaattactgGTTAATAAATGCCATTTGTTGGGCggactttctcaaaataaaaataggcaaCTAAAAACTTTCTATTTACCAACATAACCAACACTGCTTGCAGTTTCTAAATACTGCTACAATTAAATCTGTAGCCTGATATACTTACTGCTTTTCTAAATACAATttccataaaaatacaaaaagacagctaaaaatactgaaaaattgaCGTGAACTATAAAAaggtaacattaaaaaaaagctggttcggctggggatttagcttagcgcataagcacctgccttgcaagcaggcggtcgtgagttcaatccccggtaccgattaaagaaaaaaaaaaagctggttaGCAGAAAATCATGCTCCACTTGTATCTACAAGCACGGGGCcatttaaattcaaatatatttggatTTAAAACAAGTGAACACAGTAGTTATAGAAGCGATCAGGAAGCTTGGAACACGTATTTACCTCACTTTCTCCAGGACCAACAATGGGCAAACTACTTTTCTGAAAAATTCACAGAAGACAAAACCGCCACAAAGTTTAGAGAGCTCGTTTTTTAACCTTATTCTTTAACTAAATGGAAAGAATGTGAGGGGCGGTGGCCTCACTCTGGTATAC-----------------ACTTCTAAAGCACCTTTATTCGTTCCTGGAACTACTACTGCCAGCCGAGATTTACATAAGATG---TTTGGCAAGGCCTGAAA--------TTATTCGATAACTACAGAGGTTAATAGAAATCGTCCCCCCAAAAATCACTTAGTCAGCGGATGATAATTCAAAAC-TACCTTACACTTGAGAACCCACAGGTGCATAGGAAAACTACTAAGGTA-------CAAAGGTAGCTTGGGTCA-------------------ACAAACGGGCCGCAC--TAAAACTCGCTAGGGACACAGAATGTT--GTTCCTAAAT-CTGAGTTTTTTACGAATAATCACGTTTTCAAAA---------CAGTCATATTGGCATAGCCAACTCATTCACA---TGTTAAATAAAA------------------CTTTGGAATTACGACACCTCTAGACTAACTCCTTCCCCACTTGggacagaactggaaaaaaaaaaatccaggcagAAGTAAAATACAGGGGCACTTTACTACCCTGGACACCAGGCCGGGTTCCCACTAGGCCGGGA---GGACGTTTTCGGGAGCGTCGCCGCGCGGTGTCCGGCGCGCTGCTCCTGGCCGCGGCTC-------------CCTCGCGACA--GTCGCGTTGTCGTCACC--CCGTCGGCGTCAAGCCCTTCCCCATGGACACAAGGAATGGCCTCTGCGGAAAACCCTTCCTGAGATCGCGACCGGTAAAAAGCAACCACTCCTTTTTCTTCAAGCTTTCAACAACT-----CAACCCCAATCACGGTACCTGCCCCAGTCTCAAGCCCTCAGGCCCACAGAACAATTACCCAGCCTCACCCCGACCACGCGCGGAGAGGAGGCGCCAACATCAACCCTATTCTCGCGGAATGGTGAACTCATCTCTCGCGACACTTTCTACCTCGGCTTCTTTCTCAG----CTCCACCTCC------CCCCTCAGCAAT---GCGTTGCCTCAGAAACATCGCGGGATTTCCGTCACTCAGTCTCCGCCTCTTTACGGCACGATGGTCGCACAAGAATGTGATAGAATCTCGGCGGCcgccattttcttcctttcttagcaGTTAGCTGGAAGGAG-----ATCTCTGCGAAG---CCGCAGCGGCTTTCATAATACGGCCATGGCTGACTATTCAACAGTGCCTCCACCTTCTTCTGGCTCCGCcggtggtggtggcggtggcgGCGGTGGTGGAGGTGTTAACGATGCTTTCAAAGATGCGCTACAAAGAGCCCGGCAGGTAAGTGTG----GACCGCGCGGCGG-------GCGCCAAAAAGCTCACGGTAATTGGCGGCCGGCCGTGTAGGCCGCTTTCCCCTAGCGCTTGAGAAAGAGGAACGAGGTGCCCTTTTCGGGCTGAAATGTGAGCAGAGTCACGTTTCCCCCACGTTGGTGATAGCGCTAGAAAACAGCTCAGGTTTAAGCCCTTGGT----GTTAGA-----------CCCCAACGCGTGCTGCTCAGAAAGTGCCCTAAGTCCCCCTCCACTCCAGCAGCGTCTGCGCCCGTCCAGAAGTTAGCCGGACTCCCC-CTTTCCACGGAAGGACCCCCTGGCCCAGGGTCCAAACCGGGGGGGAGTTGCCCAGTCGCATGAAAGGTTCTGGTAATGGTTTGGGAAACCCCTGGGATCAGCCCCCGGGAACCGGGGGAAGGGCAG---GGGTTTGTGATCAAAAAAAGGGGCCTTTCCCCCCTCCGGCCCttttaacccccccccccccccccgcaatcAAAGCAGCCCTGGGCCACGTTCACCTTCACCTCTGCGAGGAAGAGGCTTCGGGGAGCAGCCTTCCTCTGGGCAGGATTGGCGTGTCATTTTCTGCCAGTCCTTCCCTCGTATTTCTCAAAATGGCCCCAGGCCCATTGTACCCGGGGTTTCAGTTTGAATCTGCCTCTCTCTTTTCGGAGTCGTAAACTGACCAGACCTCTTTGTATTACGTAGGTGCCGTACTATTGCCCCGAA-GGC-ACTTCTTTGCCAGATAAa

a score=59082
s chr3           152213832 1814 + 160039680 AAGTATTAGTGGTAGT------TTTAATTA----TTCTTAAT-----AAGTGAATCTTTCTAGTGT-------TTTTAAAAGTATATCTTTTATTGTAGGAAATTTAGTGCTGAGTAGTACATA--AA---GTATTAATACCCTGATTAGTATTCCGATTTT--TCTTTTAAGATTGCAGCAAAAATTGGGGGTGATGCTGGTACATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAAAGACCCTTAGAAGATGGAGGTAAGTTATAGCCAACAAGAATAATTATC----TTCCATGGTATTCATTTGATAAGATTTTCAGTAT------------------TGTTTATCAAGATGATTTATCAAAATACTACTATCTAT--TGGTCTCAGAAGAATAGGATTTTGAAAAAGACAGACCTAGAAAAGGTAGGTATAATTTGAATCTATTGGGAAGTATTATTGTAATAGAAAACAGGTTTTGTTATTTTTTTTTTTTTTTGTCCTGTTATAGGATTATGCTTGCTTTGA----GTTGCACAGAC----TGTTAATGATATAAA---------TAAAGTTATGTTATTTG-GGAAACACTTTACTGAATTTTCTCATTTATTGAATGAGTCTTTGATACTCC---CTTTCATTCAG--------TCAGAATCCACGTC-TAGGTTAAGGTTGG-------------TTGGTTGCAGG-CATCCCATTTTTATA--TTGTTTTAGTGTTTTGTGTGTTTCATATTTATCTTTAAACATTGATTAAAACTGTGGATTCATAGTGTTTTCTCTTTTTAAAAA--TCATCACTTCTGCACTTAGAAGTGTGTAC-TTTTTTATTTTAGTTTTGATGTATGTATAAATTTTGATATTGATATATTTGCCCTTTTGT------AAAAGATTCTGAT--AGCATATAGGACTGACTGTATTTGTGGCCCTT--TCTGGTAATACTTGGTTTCCTTTTGTTTAAGTATGTTT-ATATTTGCAAGTGAGGTTTTTAATATGCAA--GAAAAAATGAGCTAATGATGCTTCAGATGTTGTGTGTAATGTACTCTTTTTATTTTATGTGTAGATGGCTCTTGGACAAATCCGAGCAGTACCACACACTGGGAGGGAATGCCCTCTCCTTTTAAAGGCAGGAATTTTTATTTATTACCTGTGTTTAGTATGTAAATGTGAAATAAGCCAGTGGATTCTTAAATGGACACAATGGTCTCTTGGTTTATGTGTCTGAATTTTTGCTATACAA-----AAGCCTTGAAGTTGGGAGAATAATAATAGTGTTTTGAGCTATAGGCTGTCTATTC------ATATGTTGTATGCATTTTGTTTAT---TTGAGA--AAGGCAATCGTGTGGTTGCTTTGAG-GTTTT-------GGTGTTCTGTAGTGAAATGCTTCATTTGAGAATAATAGAACAGTTTAGATTGAAATTGTCTTGTAACGTGAGCTTTCTTTTTTGGTATAGTTTTATGATCACTGTCAGATTCACTCATCTTTTGATATGTCTGGTTTTTATGTAGTG-------------CTCTCTAATTGTCAGTTCTAGAGTGGATGAAGCATCATTAACCATTAGCATAAGGTA-TTCACCAGCATTGAAGCTAAACAGTTTGTGCTGTATTATTCCAAACTAA--AGTGTCTGT-----GCATTGTTTAAACACAAGAGAATGAAAGAATTT-----AGGTTTTGTGGGTTTTTT--------------------------TTTTTTTTTTAGATTTTTGAGTCTAGGTTGAA--TTGTGTCAGTTTTGATTCAATTGGTAAACCAATATATCATGTATTTTAATA----AATATCATTATTCTTGCTTGGTGGGGGTGGGGAGCTTTGT-TTTTAATTGACAAAA--AGTAAAAGACACTTAATTTTGCAGATCAGCCAGATGCTAAGAAAGTACCTCCCCAAAATGACTGTAAGTACTTTAAGCT
s HiC_scaffold_1 138947639 1904 + 233722169 AATTGTTAATGGTAGTAAAAAATTGAACTACAGTTTTTTAGTTTATCAAGTGA---TTTTTAATGTGATAGTATGTAGCATATATACCTAATAAAGGAGGGATTTTAGTATTAAATACTATATACCAATTTGTGTTGCTGTCCTTAATggtattgtgtttttgttttcttaagattGCAGCAAAAATTGGGGGTGATGCTGGTACATCATTGAATTCAAATGACTATGGTTATGGGGGACAAAAAAGGCCTTTAGAAGACGGAGGTAAGT--TAACCAATAAG--TAATTTTCATTGTTACATAGTGTTTAGGTGAAGTGA-ttccagtatttttattttacggaaacatttttattacaa-gGTCCCCCAAAATTATAAGGTTTGTAGTAGccttgaaagaaaaaga-----gaagagggagaCTTAGATAAGGTAAGT-------------------AAGTTTTGTCTTAGTAGAAAACAG-----------------CTTATTTTCCCTCCTTTAGGATGGTGCCGTGTTTGACAAGTTTGCACAGACTTCTTGTTAatcatacagaaaacaaaacaaaaaatacatttgcTGAGGAAACAATTTGTTGGTTTTTCTC---TAATGAACAAAATTTTTGTGTACTATGTTTTCATTATGTTActattttagattttactttaaagattACAGTTTGAACCCTAGTGTATTTTGTTGCTGATTATAgcacttttatgttttattttagtacgT--TGTGTTTCAGGTTTATCTTAAAACGTGGATTAAGAC-----------agtgctttgtatttttaaaaatgtcgaAGTATCTGAACTTAGAAATGTGCACATTTTTTGTGTAAGGTTTGATATATG----AATTTTGATACC----TTTTtgcccctttttttaaaaaaaggattgtGACCAAGCCTGTAGAA-----TGTATTTGTAGCTTTTTATCCAGGAGTACttggtttccttttatttaaatgtctttcaTATTTAC-AGTGAGGCCtttaatatacaaagaaaaaaatgagctaATGATGCTTCAGATGTTGTGTGtaatgtattctttttattttatgtgtagaTGGCTCTTGGACAAGTCCGAGCAGTACAACACACTGGGAGGGAATGCCCTCTCCTTTTAAAGgcaggaatttttatttattacctGTGTTCAATATGTAAACGTGAAATAAACCATTGGATTCTT--ACGGACACATATATCTCTTGG-ATGTGTGTCTAAATTTTTGCACAACAATCATTAAAGTTTGAAGGGGGGAGAAT----TTAGCACTTC-AGTTCTAGGTTGTCTGTTCTAAGCTCTGCATTGTATTCATCTGTGTAATGGATTAAGATGAAGGTAGTCATGTAGTTGCTTTGAGTGTTTTCTGCTAAAGTTTTATACAGTGAGATATTTTATGTAGGAATAAAGG--CAGTGTA---TGAGAGTATCttataatgtgatttttattttt--gtgtagcTTTGTGGTCATGGTCAGTTACACgcagctttttacatatcagaTTTTTACGTATTGATAGACACCTCACCCCATAAGTCTTTGGTTCCATAATG---GAAGCATCATTAGCCTTTTGTCTGTGACATTTTGCTAGTAATGGAGCT-AATAGTTTGGCTTGTATCATTCTAAAATGATTAATGTTCATTAAGGTCAGTGATTTGATACAA-------AAAGAATATCTTCAAAGTGTCGTGCTTCTTTTAAAtaggaacagaaggaaaaatgtagTTTTTCCTTTAGATTATCG-GTCAAGGTTGAAAGTTTTGGCAATTTTGATTCAAATGATAAACTATTTTGTCAGATATTTTAATATGCTTATGTTGATATTCTTGCT---TGAGTGGGGGAAACTTTGTATGCTTATTGGCAGAAACATTAAAGGAATCTTAATTTTGCAGATCAACCGGATGCTAAAAAAGTTGCTCCTCAAAATGACTGTAAGTATTTTAAGCT

a score=25401
s chr3           152217320 978 + 160039680 TATACATCAGGGAAAGAGTTTGGAGTACGTGGTATGTTTGTCTCA-----------AATAAACTCGAACTTAAGCTTGTTTTTGTTC-ATTTTTTCGTAGCTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAGGTATAGTCAAAA----CTTTTAAAGCTACTTTGCAAGTCTTAGTTGGATTGTATGTA------CAGCCAAGTTAGTCTATAATGCAAATGTCTGCATACCATTTTGTATGTGTGGTTTACTTCTGTAAACCACATTGGGAAAATGGTATAGAAACATTGTTAATTTGGGAAAACAGGTTGAAATTGACGCATTTCAGAAGA----------GGTAAAAT-AAATGTTAAAGTGGCATTC------------------GCTTTGACAGGTGTTCAGTTTCCTGCCCTGCTC-----------ACACATGCTGCCTCATTTAAG------AACCTGGCTGGGCTACTGGGAGA--------------------------CTT-----TAAGATTGGGTT------TATTAGACTGC----TTTTATGTGTATATGTACATTATTTTT-CTGTGAGGAAAATGTTAGTTTCTGTTCTTTCTTAGCAGATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTAGTAAGTACCATTAATACTAAGGTTTTAAGA------CAAAGCATACTTTCAAAAATAGT--ATGAATGATAACTTCTCCCCTTTCTCTACCTTAACTAGTAATTGGCAGAGGAGGTGAACAGATCTCACGAATACAGCAGGAATCTGGATGCAAGATACAGATAGCACCTGGTAACATTCCgtgtgtgtgtgtgtgtgtgtACGAATTACTTGTTGTTTTGTCCAGTTCTTACAGTTTTTTGAGAGTGGCTAGGAAACTCA------------AGTATTTTAAGTTTCTAAATATCTGATATTTTTATTGTATTTTTTACTTAAACTTTTCTTTTTATTTAATTGTAGATAGTGGTGGCCTACCAGAAAGGTCTTGTATGCTAACTGGAACACCTGAATCTGTCCAGTAAGTTTGAAAATGTT--AAGTCTACTTA
s HiC_scaffold_1 138950110 972 + 233722169 TATGCATCAGGGAAAT--TTTAGAATGCTTGGTGTGATTGTGTTATTAAACGTATAAGTAAACCTAAATTT---TtcgcttttattttaatttttgatagcTTTTGGATCACAGTTACCACCGATGCACCAGCAGCAAAGGTATAGTCAAAAGCTCTTTTCAGAAGTACTTTCCAAGACTTATTTGAGGTGTACGTATACATACAGCCAACTTAGT-----------------------------GTAAGTG-------------------------------------AGATACATTTATAATTTGGAAACAT-GGATGAAATTAGCCATGTTTAGAAGAACTAGGATCAGGTAGAATTAACCGTTAAGATGGCATTCCATAAACACTGCTTTGCAGCTTAGGCCATGAGTCTGTTTGCTGCGCTATTTGTCTTCCCTTGACATGTGTTGCCTTATTTAAAGTTCATAATTTAACTCCTTAACTAATAAAGCCATATTTTGGCCATGGATATGTGCCTTCTACCTTAGATTAAGCTAGGTGACATTGGACTTCCATTTCTTAGGT-TATATACAAATTAACTTCATTAGAAGGAAAACGTtagtttctgttatttcttagcaGATCTGTGATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGCTTTAGTAAGTAactttttttgaaagttttgaaaatgtaatcaaagTAATAATTCATAATCTTTCagcaaatg-----tttttgtttttgttttgttcgaCTAGTAATTGGCAGAGGAGGTGAACAGATCTCTCGTATTCAACAGGAATCTGGATGCAAAATACAGATAGCTCCTGGTAAC---------------------------------TTTATTATCTTG-------------ATATTTTCAAAGTGA--ATGGAATTCACTTTGATGAATGCATATTCATGAACTGCAAATGATCGTGATGCTAATTg----------ttaaattttcttcctttttt--ttgtagACAGTGGTGGCCTTCCAGAAAGGTCTTGTATGTTAACTGGAACACCTGAATCTGTCCAGTAAGtatgaaaatcttaaaaatttactta

a score=4550
s chr3           152217973 84 + 160039680 AGTAATTGGCAGAGGAGGTGAACAGATCTCACGAATACAGCAGGAATCTGGATGCAAGATACAGATAGCACCTGGTAACATTCC
s HiC_scaffold_1 191274980 84 + 233722169 AGTTATTGGCAGGGGAGGTGAGCAGATTTCACGGATTCAAGCAGAATCTGGTTGCAAAATTCAAATTGCTTCAGGTAAGATTTC

a score=64346
s chr3           152219635 1794 + 160039680 TAAGTTGGGTTATGCTACGTATTTTTATCAAGATTAATTTGTTAACAGATCAGCAAAAAGATTATTGGACCAGATTGTTGAAAAGGGAAGACCAGCCCCTGGCTTTCATCATGGTGATGGACCTGGAAATGCAGTTCAGGAAATCATGATTCCAGCCAGCAAAGCAGGACTAGTTATTGGAAAGGGGGGCGAGACTATTAAACAACTTCAGGTATTAT--TATATTGTAAAGAATATTATTAAGTCTTTTGAGGCCACTTTTTAT-TGTTTTTACTAACATAT---TTTCATGATATTAATAGGAACGGGCTGGTGTTAAAATGGTAATGATTCAAGATGGGCCTCAAAACACTGGTGCTGATAAACCTCTTAGGATTACGGGTGACCCATACAAAGTTCAGGTAAGCTTCACTTTGTCTCTTATATATAAAGGCTGAGGGGGT---GGACAAAATACGT-----ATTA---AATTTTTTTGACAAATATTCTGAATTGGATAACTTTCTATTATAGCAAGCCAAGGAAATGGTATTAGAGTTAATTCGTGATCAAGGTGGTTTCAGAGAAGTGCGGAATGAGTATGGCTCAAGAATAGGAGGCAATGAAGGGATAGATGTAAGTAAGAATTCTGAGTCAGCAGTGGTTGTATCCTAATCCATGG---GCACTAGTGTT-TTCCTGCTTTGAATTAAATGGACTTGGCTTAACATCATGTCCCTTTTCTTGTTTTCTTCCTTGGGGTTTTTTTATCTTGTTATTTT-TATGATCATTTAG---TATATTTACTTTTATGATTAAGTGGGGATGAGTTTTTG--AGAAATGTCTTTTAAAATATACTTTTACT----TAAGGTCCCAATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAAATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAATTCAGTTTAAGCCAGGTAAGTTTAAGGTATATTTAATGTTCTAAGAATTG-ATAGCTTTTAATCTTGACATTTATAATTGGTTTGTCACAACTTACTCTGTTTTTTTttgttgttgttgttgttattgttTT--AGATGATGGAACAACACCTGATAGGATAGCACAGATAACAGGACCTCCAGACAGGTGTCAGCACGCTGCAGAAATAATCACAGACCTTCTACGAAGTGTTCAGGTGTGATAGGAAATTAACATTTTCAGTTTGCTTTCTTTGGAAAAGTTTTTATCATACCTGAATGAAAAAAATGCCCCTCCAGG---TTATATTAGAATCTGTTGGCAGTGTTAAAATGACTAACGTTAAATTGCTTTAAGGTAAACAT----TTTAGGGTAGATTTGCATAAATGTTCTGCCTTATTTCCCCCAGTGCATGTGAACTTTTATTTCt--------------------atgggtatatgtgccttggcaattgtg--cctatggaagccaaag--gaaatttttctgaagttggttct--ctattatgtgggtcctag-----aaattaaacccaggtcatT------TTGCATGTAT-GGGTAGTCTCCCAA--------TATATTTT---------------AAAAGTGGAAGTTATTACTTAGTTGACTATTTTTGTTTGACGTCATCTCTTAAT--------------------------TTCATTGTTTAG--------------AAATACGAGAGTTG----------------------GGGATAATAAGCTAATAGTTTTATTACAGA--------GTTTAT-----------TTTGTTCTCTCCTTTCTTAGGCTGGCAATCCTGGTGGACCGGGACCTGGTGGTCGAGGACGAGGTAGAGGTCAAGGAAACTGGAATATGGGGCCCCCGGGTGGACTCCAGGAGTTTAATTTCATTGTGCCAACTGGGAAAACTGGACTGATCATTGGAAAAGGCAATGTATTTTAAACTCTTT
s HiC_scaffold_1 138952745 1864 + 233722169 taagcTTAGATATGTTAAACTTTATTATTTGAATA---TTGTTAAAAGGTCAGCAAAACGGCTACTGGACCAGATTGTTGAAAAGGGCAGACCAGCCCCTGGCTTTCATCACGGTGATGGACCTGGAAATGCAGTTCAAGAAATCATGATTCCAGCTAGCAAGGCAGGATTGGTTATTGGAAAGGGGGGAGAGACTATTAAACAACTGCAGGTATTATGCTATatagta------attttaaattatttttaagccagttttcctgttttctttttaatatgtggcttttataattttaacaggAACGGGCCGGAGTTAAAATGGTTATGATTCAAGATGGGCCTCAGAACACTGGTGCTGACAAACCTCTTAGGATTACAGGCGACCCATACAAAGTTCAAGTAAACTTCACTTTATCCTT--CATAAAAGGGTTGGATGTGTTTGGGAAGTCATGCATGGGTAATTACAGAAGTTTTGAGGCATGCTTTCTAAATTGACT--TTTTCTACTTCAGCAAGCCAAGGAAATGGTGTTAGAGTTAATTCGTGATCAAGGTGGTTTCAGAGAAGTTCGAAATGAGTATGGGTCAAGAATAGGAGGCAATGAAGGGATAGATGTAAGTAAAAACCCC-AACCAG--ATGACTATGTGCGAATCAGTAAAATGTGATCATGTTACTCCTTTTTGGAAGGAGAGAgccttaact--------------tttttttctttctgttttggaaaaCTTTGTGTCATGTTTTTCTGTTTGAATAAAGAGCATTGTAGATACTTATAAGAT---GTGATAATTAATTTTTGGAACAAAGCTTTTTTAACATTTAGTCTTATTTGTATAAGGTCCCCATTCCAAGATTTGCTGTTGGCATTGTAAtaggaagaaatggagagatgattaaaaaaatacaaaatgatgctGGTGTTCGAATTCAGTTTAAGCCAGGTCAGTGCA---TACATTTAATCTTGTAAGCATTTCATAGA-GGTAGACTTACTGTTTA---------------AGTTaattcagtttgtttct----------------ttgttttaaagatgATGGTACAACACCTGATAGAATAGCTCAAATAACTGGACCTCCAGATCGATGTCAGCATGCTGCAGAAATTATCACAGACCTTCTTCGAAGTGTTCAGGTTTGATA------CAACACTTC-------CCTCCATTTGAAAAGTGTTT----TCCTTTAAGTCCAAAAGTGCCTTCTTACATTTTTACATTAG--TCTGTCA--AATGTTGTTATTAGT--CAGTAGA-------AAGGTAGACAGAACATTAAGAATTGCTATGTA-------TCTGCCCTAT---CCAGATTgactgtggcttttttttttttttttaatgtttcactgagcatggtggcacaggcct--gtaattctggcactttggagactgaggtaggaggatcactgagtttgaggctggctGCATTGTGAAGCCTAGTCTCAAAAAGAAATGGATATTATTTGCTCATTGTTTTCATCAACTATTCTCTgaagttttctctaaatttctaatttaagattatgaaaagttgagaaaaatgctgtatt---tatttatttttgaagcaatGTATTGCTACAGAATAGTTTgggctggtattgaactcactgtatagcccacaCCTACCTCAAAGTTgagcagtgattctcctgcttcaacctcccaagagtAGATAGACGTTAATTTTATAATGGAAAAAAAGTGTTTATTTCTATGCCAATTTATCTGTTCCCTCCTTAGGCTGGTAATCCTGGTGGACCTGGACCTGGTGGTCGAGGAAGAGGTAGAGGTCAAGGCAACTGGAACATGGGACCACCGGGTGGACTACAGGAGTTTAATTTCATTGTACCAACTGGGAAGACTGGATTAATAATAGGAAAAGGcaatgtattttaaacttttt

a score=4979
s chr3           152219681 168 + 160039680 AGATCAGCAAAAAGATTATTGGACCAGATTGTTGAAAAGGGAAGACCAGCCCCTGGCTTTCATCATGGTGATGGACCTGGAAATGCAGTTCAGGAAATCATGATTCCAGCCAGCAAAGCAGGACTAGTTATTGGAAAGGGGGGCGAGACTATTAAACAACTTCAGGTA
s HiC_scaffold_1 191277959 168 + 233722169 AGACAAGCCAAGCGGCTCCTGGGCCAGATCGTGGACCGCTGCCGGAATGGCCCTGGCTTTCACAGTGACGCAGAAGGCAACAGCACGGTTCAGGAGATTCTCATCCCTGCGTCTAAAGTGGGCCTGGTCATCGGGAAAGGAGGAGAGACCATCAAGCAGCTGCAGGTA

a score=4527
s chr3           152219928 108 + 160039680 ATAGGAACGGGCTGGTGTTAAAATGGTAATGATTCAAGATGGGCCTCAAAACACTGGTGCTGATAAACCTCTTAGGATTACGGGTGACCCATACAAAGTTCAGGTAAG
s HiC_scaffold_1 191279058 108 + 233722169 ACAGGAGCGTGCAGGGGTGAAGATGGTCATGATCCAGGATGGCCCGCTGCCCACAGGCACAGACAAGCCTCTCCGCATCACTGGGGACCCCTTTAAAGTGCAGGTAGG

a score=6995
s chr3           152220456 154 + 160039680 TACTTAAGGTCCCAATTCCAAGATTTGCTGTTGGCATTGTAATAGGAAGAAATGGAGAAATGATTAAAAAAATACAAAATGATGCTGGTGTTCGAATTCAGTTTAAGCCAGGTAAGTTTAAGGTATATTTAATGTTCT--------AAGAATTGATAGCTTT
s HiC_scaffold_1 191282273 161 + 233722169 TACTTA-GGTGTCCGTGCCTAGGTTCGCTGTCGGGATCGTAATAGGAAGAAATGGGGAAATGATCAAAAAGATCCAGAATGATGCTGGTGTGAGGATTCAGTTTAAACCAGGTTGGTGTTGGTGATTCTCGAAGTGCCATAGTGGAAGGAACCGAGGGCTTT

a score=4523
s chr3           152221290 122 + 160039680 CCTGGTGGT----CGAGGACGAGGTAGAGGTCAAGGAAACTGGAATATGGGGCCCCCGGGTGGACTCCAGGAGTTTAATTTCATTGTGCCAACTGGGAAAACTGGACTGATCATTGGAAAAGGCAA
s HiC_scaffold_1 191285254 126 + 233722169 CCTGGCAGTAGCCCGAGGTAGAGGCCGAGGCCGAGGTGACTGGAACGTGGGGGCCCCTGGTGGCGTCCAGGAGATCACGTACACCGTGCCGGCGGACAAGTGTGGCCTCGTTATAGGCAAAGGTGA

a score=6685
s chr3           152222070 180 + 160039680 CTTGCGGTTTTAGGAGGTGAAACCATAAAAAGCATAAGCCAACAGTCTGGTGCAAGAATAGAACTGCAGAGAAGCCCTCCACCTAATGCAGATCCCAATATGAAGTTATTTACAATTCGGGGCACTCCACAGCAAATAGACTATGCTCGACAACTCATAGAAGAGAAGATTGGGGTAAGT
s HiC_scaffold_1 191288124 180 + 233722169 CTTCCACCTGCAGGGGGCGAGAACATCAAGAGCATCAACCAGCAATCGGGTGCGCACGTAGAGCTGCAGCGGAACCCGCCGCCCAGCACCGACCCCGGCCTGCGCCTGTTCACCATCAGGGGCGTCCCGCAGCAGATTGAGGTGGCCCGACACCTCATTGATGAGAAAGTTGGCGTACGT

a score=14934
s chr3           152222078 319 + 160039680 TTTAGGAGGTGAAACCATAAAAAGCATAAGCCAACAGTCTGGTGCAAGAATAGAACTGCAGAGAAGCCCTCCACCTAATGCAGATCCCAATATGAAGTTATTTACAATTCGGGGCACTCCACAGCAAATAGACTATGCTCGACAACTCATAGAAGAGAAGATTGGGGTAAGT---------GTACTCTCATTTATAGCATAGTTCCTGGTAACTTTA------AAATGTACTGTGGGAAAATACATCGTTTCTAATATGAAATTGCAGGTATTGTGATATAGTGTATATACATATATTGACATAGGAAAGATATCCAA-AATACAAGAAccatga
s HiC_scaffold_1 138955619 318 + 233722169 ttcagGAGGTGAGACCATAAAAAGCATAAGCCAACAATCTGGTGCCAGAATAGAGCTTCAGAGAAATCCTCCACCTAATGCAGATCCTAACATGAAGTTATTTACAATTCGTGGCACTCCCCAGCAAATAGACTATGCTCGGCAACTCATAGAAGAAAAGATTGGTGTGAGTAGGCTTTAAATATCTTAATTTATAAC--AGGCCCTCTTAAGGTTATAGCTCAGATACACCATAGA---------CATTTCTAGTCAGAAGTTATAGAtttta-gacataataaataagtaCAT-----CACTGGAAAGATGTCTAGCAATAAAAATAACCTGA

a score=18890
s chr3           152222646 1353 + 160039680 AATTTTACATGGCAGATGATGACATTTTATTTTTTGCACCAAAATTCAAAGAGGGTAAATTTAAATTTGTTATTTAAGCGTAGAAATGGAAGAGTAGTTGGACTTTGAATTACTCAACCATTACATTGTTTGAGTGTCTAGTTATTGTTTATGTTTTCTTTTCCTTTTTTTTTTTATAATAGGGCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGGGTTCCAGGTCCTCATGGGCCTCCTGGACCTCCAGGGCCGGGAACTCCAATGGGACCATACAACCCTGCACCTTACAATCCAGGACCACCTGGCCCAGCTCCTCAGTAAGTACCACATTTGCTTGGTTCTGGGCTTTCCCTAAAGACCTAGGAATTGggggctggagagatgacgatggctcagcagtgcagagcacttgttcctgttgcagagggacctgagctcacttcccagcaccacacgggggttcgcaaccattcgtgacaggttccagggtatctttacagcgacactaggcatacatagctgcatatacatacatgcaatacatgcagaggcaaaacctacacataaaataaataaaGCTGGCTTTTATTAATGGTATTTGTGTTTTGTTCCCCACCCCTAGCGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCGTATCCACATTGGCAGCAACAGGCTCCTCCTGACCCAGGTAAAGGGTAATCTACTATTAATATGTTAGCTTCATTGTATACTGCTGGTCACAGTCCTAAA---CTACCTACTGCATGTGCGATCT------------------------------------TTTAAGGCACT------------------------------------------------------TCCCCTGCAGTATAGGA-TGACACTGC---------------------------TGTC--------------------------------TAGTATGTT----GTGACTTTATTCAT-----AGTAGTTCATATTTATAAAAT------AATGT-----------------------GTTTAACACTACTATGTTCTCAAATAATAAGTATAAATT----ATTTTGTTGCTGATAAAATTAAGGTCCCTTAATTACCAAAACAG-----------------------GAGAGTACATTTAT-----TTTTCTCTCTTATAATCTGGATTT---TCTATAGCATGGTGTTCTCATTATATCTTCCCATAC----TGGTTTTGTTTCTACTCCATCATGATCAGGAATCAACTTGGAAATAG--GACTTTT------TTCTTTGTTTTTCTTTTGTTTTTTCACTTTGCAGCCCCTGTAGTTTGATTCATTTGAAAAGTTTGAGAGAACGTGTTCTGAGTTATAGA------TTTCTACATAGTGTATTTTTTACAAATCAAAG---TTGATTTAGATGTAATT-GCTTTGTTGGATTT-GTTAA----ATGTTTTAATATTTTAATGTATGTTAAATTCATAGGAACTTTTCT--------------------CAGTCACCAAATAACCACAACTTCTATTCATTTAAGAAACAACTTGa
s HiC_scaffold_1 138957950 1351 + 233722169 AATTTTACATGTC------------TTAATTTGTTTCATATGAAT-----GAGAAAAATCTAAACTTCATTACTTAATGACTGTAA--GAGGATAAAATGGCCTTTGAATTATTTGAACAAgactttttgtga--------tttttatgtgtgtgttatCTTGCTTTTTT--------GCAGGGTCCAGTAAATCCTTTAGGACCACCTGTACCCCATGGGCCTCATGGTGTCCCAGGCCCTCATGGGCCTCCTGGGCCTCCAGGGCCTGGAGCTCCAATGGGACCATACAATCCTGCGCCTTATAATCCAGGACCACCTGGCCCAGCTCCTCAGTAA----------------GTTCTAGGTTTT----------------------------------------------------------------------------------------------------------------------------------GGTTTCTGGAGTTTTCAGCAAAGATGC------TACCTAGCT-------------------------------------------TGAGGTAAATAA------TCTTCTTTAATA----------TTGATTTCTCCCCTGCAGTGGTCCTCCAGCCCCATAtgctccccagggctggggaaaTGCGTATCCACACTGGCAGCAGCAGGCTCCTCCTGATCCAGGTAAA--GCAATTTAACATTCATGTGTTCTATTTATCTGCCACTGCT--TTACATTCTTAAATTTCTTCTTGTTGAGTCTACGTTTTTTGGTACATTATCTATATTACTTACTCTTTCAATGGTTTTGGGCACTGCTTCCATACTGTTACGTAGACGTGAACTTTGCTTTTACAAAAgtgttttctagttttctgtacTTTAAAATTGATACAGCAAAGAGCCAAAAGCTACAAAAGTACAGTGTCTCAGGTTTTAGGTACCAGTGCTTGCAAATGAATAACATGTTAATGGTGACATTATCCATCGAAGAatagtt--tatttataaaatgtcttaAATGTCATAACAGTGTCAAATACTTGGGATTTAATTCCTCTAAGTTTTTGAGTAAGA--TATAAACTGTCCATTCTAGtactcttaatttaaaaaaacttcatgCATTAAATTAGTTCATATGTAATAATTGCATGCTGGAACTCTATAtgttattattttctgtattgaaattggaattttaatatataaaataacattt---tgctGTCTTCTCAGACCCTGTAGTTGTTTTCCCTGTCTTTGTTAAAAAGGCATT-CTTTGAAACCAGCTGACTTATAAGTGATTCCTCATTCTACC----TGTCTACCTTTTGAGTCCTCTTTCCCTGGAGTCATTCAAAGAGGC----------TATTCTGAGTTATGGAGTACTGTCTTCATATAGTTTTTTAAAGACTAATCAAAGTAATTGATTTACATGAAATTGGTTTTGTTGAATTTGGTTAAAAATATggtcttat-ttttaaagtaattcacTTTCATAGAAAGTGTGCTCTGTGTGATGACCAAGAGGACTGTCACCAGATAAT--CAGTGTCCATTCATTAAAGAAACAGCATAA

a score=16500
s chr3           152225764 515 + 160039680 AAAAAAGCAAAGACACGGGATTGAGCTGAGACAAACCATTGGATTGGAAGCCAAAAGATCATCCATTTATATACCAGTTCCACCGATCACTAGTAAATTACTTAATACCTGTAACCTAGGAAATTACTTAATTCCCGAGGCTGAAGTTTCTGAACTAA---AAGCCAAGTGATGATGATAA--TACTAGAACATTTTGAAAGTTTCCATTCGCTATTGGT------------AACTTTTGAGCCTATTTGTCAGGAATCACCAAAAAGGTAAGGGTTGGT--------------TTCTAGAGTTTACATATTAACCTTGAAACCGCTCTTTGTTTTTACATTGTAGCCAAGGCAGGAGCAGATCCAAACTCGGCAGCTTGGGCTGCTTATTATGCTCACTATTACCAGCAGCAGGCACAACCCCCACCTGCAGCTCCTGCCGGTGCACCAGCTACAACCCAAACGAACGGACAAGGTAACTACGGTAATGAAAGATTTTATTTCCTATTTTAAAGCTATAGTTTGTGTTTGGATTCATGTATGAAG
s HiC_scaffold_1 138961075 505 + 233722169 AAAGAAAATAGTGCCCTGGAATGGTTTCAGTCAAAGTACTAGATTGCGAGCCAAAAGACCTTCCGTTC-TCTCCTACTTCTGC---TCACTAGT-------------TTGGTTACCTAGGAAAGTCCCTG---CCTGGAACTCAGTTTTCTATATTAATAAAAGCCAT----TCATAACAAATtgttagaaaaattt-aaagttttcatttactGTTTATTGTTTAATGACTGATTTCTGGTTCTTTATGT------TTGCCagaaaggggtgtgtgtgtgtgtgtgtgtgacattatAGGCTTCAGATGCAAGCAttga--------tttgtgttta--ttttagcTAAGGCAGGAACAGATCCAAATTCAGCAGCTTGGGCTGCTTATTATGCTCACTATTATCAACAACAAGCACAGCCACCACCTGCAGCTCCTACAGGCGCACCAACTGCAACCCAAACGAATGGACAAGGTAACTATGgtaactgaaatttttattttttattcaaaaacCTGAGTTTGGGTTTAGGATTATATAGAAAG

a score=9210
s chr3           152228097 160 + 160039680 TGGTGTAGAAGCAAAAGTGCATAACAACCTTCAGAAACTTAAATCTTGTTTTGTTTGTTTGTTTTTTAAAAAGGAGATCAGCAGGCTCCAGCTCCAGCTGGACAGGTTGATTATACAAAGGCTTGGGAAGAATACTACAAGAAAATGGGTATGCTCTACA
s HiC_scaffold_1 138964147 155 + 233722169 TAGTCAAGAAGCAGAAGGCCCCATAGtgccttaaaaattttaatcttgttttgttt-----ttcttaaacaaGGAGATCAACAGAATCCAGCTCCAGCTGGACAGGTTGATTATACCAAGGCTTGGGAAGAATACTACAAGAAAATGGGTATGTTGTATA

a score=335765
s chr3           152231676 6873 + 160039680 [encoded data, 7656 characters]
s HiC_scaffold_1 138971696 7357 + 233722169 [encoded data, 7656 characters]

a score=19157
s chr3           152242567 359 + 160039680 TAGTTTCCAGATTATTACATATATACCAAA-ATGAACTGTAAATACTAGAATAC-----------ATTTTAAGATCAAGATAAT-------------------AAACACAACAGTAATATACCTCATGGAAGTTTTCTGCTTCTCGCTCTTTGATTTCAAGGTCAATTGCTCGCCTTTTTGCTCGCTCTTCTTCTATCTTTTTCTGTACTTCTTTTTCAGACAATTGTCCAATTTTTTCAAACTTGCTTTTTAGATTTTTAGCTTGAATTGAGCCACTCCTTTTTAATTTAATTAATTCTTCATATTCTCTACTCAACCCAAAGCTTTCATTTTCTTCTTCTTCCTTCAAAAGAGTAAGATTTCCAAATGTTGAGTATCAGCAAATTACA
s HiC_scaffold_1 138981059 386 + 233722169 TAATTTCCAGATTATTA--TCTATGCCAGGGATTAACCACAACCACTAGAACACCCCAAAGCCACACCTGAGAAACCAGTCAGCCCTGTATGGTGGCAGTGTCATGTGTGAAAGCAGCGTACCTCGTGGAAGTGCTCCGCTTCTCGTTCTTTAATTTCAAGGTCTGTCGCTCTCCTCCTCGCACGCTCCTCTTCTatctttctctgtatttctctttcaGACAACTGTCCGATTTTTTCAAACTTGCTTTTCAGGCTCTTAGCTTGAATAGAGCCACTTCTCTTTAATTTGATTAATTCTTCATATTCTCTGCTCAATTCAAAAGTttcactttcttcctcttccttcaagaaattaagattttt--atGTTGGCTATCAGCAAATCACA

a score=17669
s chr3           152243819 286 + 160039680 TCTTACCTTTCCCATTTCTTGTCTCAGTTGTTCAAATTCCTGTTTCTCCATTTCTAGTTTATGCCTGCGTTCTTCCTCTGTTCGTCGTCTTTCTTCTTCCATTTTTTGTCTTAATAATTGTTCAAAATTAATTTCTAGTTTTCCAGGAGTAAGAGATTCTTGAGACACTGTTTTATAAATCTCTGGGGAATCATCATCTAATACCtatttaaaataaatatttttttCAGAATTGTGCATACTAAAAAGTTATTCCTTCT--AGACTGGGGTATCTGTGATATGGAGG
s HiC_scaffold_1 138983934 287 + 233722169 TCTCACCTCTCCCATTTCTTGTCTCAGTTGTTCGAATTcctgtttttccatttctagctTATGCTTCCGTTCCTCTTCTGTTCGTCGCTTTTCTTcctccattttttgttttaataattcttcaaaattaatttccagttttcccGGTGTGAGAGATTCTTGAGAGATTGTCTTATATATCTCTGGGGAGTCATCATCTGCtacctatttaaaataattatcacttTT-GCCTTCTATATACTAAAAAGAGAGTATTTATACAAACTGGGGTTACTTGAATAGAAAGG

a score=4568
s chr3           152243825 155 + 160039680 CTTTCCCATTTCTTGTCTCAGTTGTTCAAATTCCTGTTTCTCCATTTCTAGTTTATGCCTGCGTTCTTCCTCTGTTCGTCGTCTTTCTTCTTCCATTTTTTGTCTTAATAATTGTTCAAAATTAATTTCTAGTTTTCCAGGAGTAAGAGATTCTT
s HiC_scaffold_1 138987653 155 + 233722169 CCTTACCATCTGCCGCCTGGCTTCTTCGAAGGCTCGTTTCTCTTCTTCTAAGCGCTGTCTGGCTTCCTCTTCTGTTTGCTTCTTTCGGTTTTCTTGTCTTTGTCGCTCCAGTTCTTCAAAAGTCAGTTTCAATTTTCCAGGGAAAGGCGATTCTT

a score=42866
s chr3           152247927 1879 + 160039680 CTTGCCATGTGCCTTCTCGCCTCCTCAAAGGAACGTCTCTCTTCTTCTAAGCGTCGTCTCGCTTCCTCTTCCGCTTGCTTCTTGCGATTTTCTTGTCTTTGTCGTTCCAGTTCTTCAAAAGTTGATTTCAATTTTCCAGGAAAATGTGATTCTTTTTTGGCC------TCTGTTTCATCATCCTATGCAAAC---AAACTT----GTTACCCA--AAGGGCAAT---------------------------------------------------------------------------------------------------------------------------------------------TGTTAAACT----------------------------------------------------------------------AAACTTTTGATTTATTCTTGTAAAAAAAAATTACCATGACTAATGAAAGACATTTTGCTTCTTTGAGAACTCGGCACTCTTCTTCATATC---TCATTTTATCTTCTTCATGGTTGGTTCTCCCATTTCCTTC---TTCTCTGTCCAGGTCCTCAGGATCCTTTGTTTTTCCAGGTGTTTTGTATGATTTGGCAGGTACCACTGTTATAAGTAGTGAGTCATCTCCTTCCTA---TGTGTAAGATACATAATTAGCATCCATATCCTTAATAAAAATGTAGGTGGTAGGGTACTTCACCTCCATAAGTGGTGA-----ATTACATTGCTGTCAAGGCTATAAAGGacaaaacaaaacaaaaaacaaaacaaaaaaaaaaAACCTTATTCTTAAACTCGTTACTATTAACTACATTTTTCTCTAAACTCACTATGC---ATGAATCAGTTTTACTGAGATCCACTGATGGC-AGTTTCAAGGAGCAGTCTATGATTTGAAAGATAGAATTGATTTGCCTGGTTAAGTAAC-TTACTTTA--GACACTCTACATTAATTGCACAA-------AAGGTGTTGTGCATGTGAGCATACTTCAAACCAATTTGATGGTGGATAGTTTATGGTTAAACAAACAACAAAGTTTACTCCATGATCTGCTTCTCCATCCAAGCTTTTCAGTACTTAATAAAGTAGTGTTTAATGAAAA-----AAGCCATTGAATATTCACCCAAGTGATGTACTAACACTCACAATATAGATAAAACTGTAAAGCATTTATCCTATTAATGATTAAAACAAATTCTTGGGTTTCtttgttgagacaaggtctctctatgtagttctgactatcctggaacttgctatgtagaccaggctggccttgaactacagagatgcacctgcctctgcctccttaatgctagaattaaaaccctgcaccactacacatggctAAATGCATTCTCAAAATCGATTTTAATTGGTTTTATTACAAATTTATCGTTATCTCTTAACTTTTTTCAAAAATAA--AGATTATAAAGTATAACATATGCCCCTAAATTAAAATTTTTCCAACTTTTGTATCATAATTTTAGGCACACCATCAAATTGGTTGGCTGGATTTTTAACTTTGCTAGTTAACTGGGCTGTTTTTATGGCTGGACATTCCTTCATTGTAGTACACACTCCTCTCTACGCTAGTATGTGAAAACCAGAACATGAGCTCTTAGGGACTGTGAGGAAAGAGGACAAATGGTGGAAAGTAAAATCCCTTTTAAAATGTCAGCTTTCAGCAGCTTTAGATGTT------AGTTCAGGAAACGTGTGTCCCT---AAAAGACTCGTGGACGCGGTCTTCATGGCCCAGCCGGGCAGGCAGAAGCATACTTTTCT------------TTGAACTACTTGTAAGAGTCAAAGTATACTCTTGCCTTTGCAAACCATTGACTTTT--------GTTATTGTGATATTTATACTCAG--TAGTGAAGTAAAAGCCTCTAC--GTGTCTCTG------------------TGAACCAGGT-ATTC--AGTGAATG-TTCATTAAAGGAAATGTCTG-TTACCTCTGATGCGGACTCGGTTCCCGTATTGTTTATGTCCTCAATCTATTGAATGAGAATTTCATATCGTTACATTACGTTGAATCTCTGCTTGATGCTTTTAAACATACATCTGAAAAGTAATTTATCCATGGCTTGTGGTAAAACTTC
s HiC_scaffold_1 138987654 1958 + 233722169 CTTACCATCTGCCGCCTGGCTTCTTCGAAGGCTCGTTTCTCTTCTTCTAAGCGCTGTCTGGCTTCCTCTTCTGTTTGCTTCTTTCGGTTTTCTTGTCTTTGTCGCTCCAGTTCTTCAAAAGTCAGTTTCAATTTTCCAGGGAAAGGCGATTCTTTTCTTGCCTGGTTTTCCATGTCATCATCCTAGGAAAACATGAAACCTATCCGTTAGCCATCAAGTGAGATGCCGTGAGCGGaactatttttcctcattttttgttgttgttgttgttgggtatttttgggggggttgcttgtttgtttgtttgtttttgctctggtatgcagttcaggctggccttgggctcactttgtagcccaggttggtcttgaactttcaacgatcctgctgcctcagcctcctgagtgctgggattacaggagtgcgccaccagcCCCagctagaaatattttaatttgttctt-taagaaCGATTTACCATGACCAATGAGAGGCACTTTGCTTCCTTGAGAGAGCGTCGCTGTTCTTCGTATCGTATTCTTTTATCGTCCTCACACGAAAGCCTTTCTTTGTCTTCCTGTTCTTTTCCTGGATCCTCAAAATTCCTCATTTTCCCGGATGTTTTGTATGCCTTGACAGGTACCACTGTTATTAGGAGCGAGTCATCTCCTTCCTATtttatataagatagataattaaCTTACACcttcttattaaaaattcagGTCTCAGGGAACTTTACCTCTGTGATTGGTGAATTTCATTACATTGTTGTCAGTGTTATTATG--------------------------AAAAACGAGAACTTACATATTTTACTAATTACTTTTAG--ATATCTTTCTCGAAAGTCACGGTGCATtattagtgaatcttattgaaATCCACTGGTGACAAGGTTCGAGAAGCATTCAGTTCCCTAACAGGTGGCGTTAACATAACTAATCAGATAACAAAACCGTAGTGACATTGCCAGCTGAATCCCCAACCCCAGCCAGCTCAGGTGCCCGTGAGTGGACTCCGAATCAATTTGATGGTGGATGGATTTTGTTTAAAC--ATCAAAAAGTTTCCTC----ACATGATTCTTTATGCAGGTTTTCAAATAATTAATC---TAGTgtctaatttaaaaaatcaaaccacaaGATAGCCAATTGATTGGT---TAAAAATTTACAATATAGATAGAAATCTTTAGtattttatctatta------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaatattttttcatttctgatttcagtTAGCCCTACTCCA---TTATTGTTGTTTC-TAACTTTTTGCAAAAATCagcaaattataaaatgtaatatatgtcctaaaaat-aaacatttccaatTTATGCAGCTGTGGTTTAGGGGCACCATCAAATTGTTT-----GAGTTTTAACTTTTTCTGTTAGATAAAAAG---ATATGGCTG----TTGGTAGGTGGTGATACACACTTCACTGTCTACACCCATATGAAAACCACAACATACATTATCAGCg-ctgaggagaaaaagaaaagat----gaaaagaaaactacCTTTAAAGTGTTAGTTTTCGACAA-TCTGAATGTTAGTAACAGTTTGAGAAATGCACAGTCTTGGCAGAGGGTCCTAAAGTGAGACTCTTCTAATCTATAAG----AGCAAAAACATTCTTCCCTAAACACACTAAGCTGTAGAGTTTGAAAGGACAGAAGTATAATCTTGCCTTGGCAAAACAC--ACTTCTTTTTTGTagttactgttttatttataataaaacaaattaaataaaaagctcTTCTAGTTTTTCTGAGGTTACAAGATAATGTATGAATCAGATCATTTGAAGTGAGTGTTTCATGAAAGGAAATGTCTGTTTACCTCTGATCCTGATTCAGTGGCCGTATTGTTTATGTCCTCAATCTATTGAATGAGAATTTCATATCATTACGTTACATTGGATTTCTGCTTCTTGCTTGTAAACATACGACTGAAAAGTAATTTAGTTGTGACTTAcggtaaattttc

a score=46023
s chr3           152250923 3214 + 160039680 TTTTACTTTTGTTCACTTTAAACCACCACAAGGC-AACAAAAGATACAGTCGTGTGTTTTTTTCAACAAACATGGAAAATGATACATTTATTTGAGGGGTGCTATGCTACTAGTGTAGTCAAGAACAGACGTTCACATTCAGTTATTGCTGACTTTCACAAGTTAACATTACATAACTGTTTCTAAACTTTTTTTTTCTTTATGTAAAGCAAA-----TTTGTTTCTTCC----TCAGATTTCTTTCCCTGCCTCTTCTCAAGATCCCATCTCCCACCAAGACCATCTCTGTGTCAAAAG-GATGGACTT-----------AATTTTGTCCATCAGG-TATCTTCAGAGTTAACCAGATAAT---------------------------------------------------TCAC----------------------------------------------------CTACAGGGTTTTCCAATGAAATTTTTTTATTCTAATATCTAATATACAAGGTATATTCCTTTTAAAGTCTTTGTAAGATCCTGCAATCTTAGAATTGGCAATTATCTTGGTGATCACT---TTAACC----TTTCTGAGCTCAGGAACACCT-CTCAGCACGGTGGGTTGTATTGGT-----------------------------AAACTGTAAACAAACATT---ACACCATACTCCATG----------------AAGTCATGTTAAATTTGAGTGGAAAAGGTACTTCTATTTCAGAATTAGACTTTCCATATTTATAAGAAGAAGTTACTATTACTACATTGCTGTG-----GTACTCTTAATTTCTTAGGGCTAAAATATTATTAGCCAGGGTTCTATGGCACCCTAC-ATACAGCAAGTGTTTGCTGTAAACACACTGACTTTTTTTTTTCATGAATATACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtTTTTAATTTACTTTTGAACATCCAGTCTTTATTATAGTCAGGCTCACTGAAAGTATAGAAGACTGAAAGATATTTTATATATATA------------------------------CATGGTATACTGTATTAGATGTCACAATT---TATATACTTCAGGATTGTTTATAATCTTGATATAACTATAATCTTAACTCCTATATCTACATGCTTAAAATTTTG---------------------------AGttaaatataatataaacatttaataattctcatt-----ttata-atttGACTTCC----TTATAAAGTTTC----------ACTACAAAATG----------------AATGTT------CACCTTTAATCACTACAACCTAG-------AGGCA--------ACCCTGAAGTCCATGGCGTTCTTCAGATAAGGCTATAAAGCAAAGTGTAGGAAATTCTCAGTCTTCTTAAGGTTAATGCAGCATACATCAT------------TCACCAGCAAACAAGGAGCTGCTGT-GTCCCAGCAGAGGTTATTTGCAAAATTGAAGTTAATGGATTTTTCGGGCATGCAATAATGCCTTATTTGCATTATCACTTTTCTCTTTAGAAAACAATAAAGATGA---ATGGAGCATAGCACATCAACTTAA----Aggagtagagaggctgc----------tcagt----ggttaagac--acctctgcatctctgtgttctcaggacctggct-----------ttggttcctagcaca-------------tacatgatgactcagaactgtctgtaactccaagcccaagggattcaatgctttctgacctctgtggacactgcatgcccatggcacacgagcatataGGGCAGCACTTAGAAATGCTGCTATTGAAAAGCCATAATTGTGCTTTGTAATTATAATTTATGTGTGAAAATGTCCTAAAGCTTTATAAAACTCTCAAAGATACCAAGAAAAGTTGGGAGTATAGTCAGTTTAAGGAATGTAGAAATAAT----TAGTAAGATTATA-CAGAATAAAATATCACTCCTAAGATAGGCCCATTCTGCCCATACTACTGGGCAACGGACGTGAATA----TTTTCCTTTCAGATAATATTTTTAGGCTAGCCACTATTAATAAGTTTATACTGTACTAA-GTATTTTAATTCAGCAACATCCTGATTAGTTCTCGTTTGTTCTGTTAGTTACAGAAATAACCCCCAGTGTAGCATTTAGCACCTACCTGCTCCGCTCTTTTTGCTAATTCGCGCTGTATTTTCCTCTTTTCTAACAGATCCTGCTCAATTCTGCGTTTTCTTTCTTCTTCTGTTCTCTTTCTTTGTTCTTCCTGTCTGTGTTTCTCCATTTCATCGAATTTACCTTTAACTGTCCCTAAACACACACACAAACAAAACAAAAAAAAACCCTTGGATATTTGGTCATGTTTCTTTCTCTTGCAATCTCATTT----------AGTTCTCAAGGCTCTCACCTGTTAGCTTTGGGACATAAGCCTTTTCTATTTTAGGAGAACTTTCTTCCTCATCATCAGAAGCAAGCATTTCTTTAATCTAGGTGGTTGAATAAGTAAATATGAACAC-GTTTCAAAATTAGACTAGATTATACTAGAATAGCCCCTCTGCCCCACA--ctgcagaaga-accctctagggtcccgtgggttcctgaaagcaccgacaatgctaagtcctgtgcatgctgtttttcttgtatgaaaaatatatacatataaaacaatatatattcggcacagtaagagacaaagaacaaataattataaa--aggatagttataaaagtatactgtaatggaatgcatgtaaagcttca--gtttgcctctgggctggatggtttg-----------------------gaccatggttgactgcaggcagcgtaggcagcgagggaccgcagacagggaca------ggggaGCACACGG-AAGTCAGCTCACAGACGTGAAAAGCAGTGTTAACCGTGGTCTATAT-----GAAATGTTAGTGGGAATAATGCATAAATATGAAGAGC----------GTGAACATTTTCACAAGAATAAAATAAAATGACCTCCTGCTTTCTCCTGTTCCATTCTCTCTCTCTAATATATTGTTCTTTTCTTCTTTGCTTTTCGTCTCTAGATCGCCTTTGATTTCTTTCTTCCCTGGCCCTCTGCATGGCTTCAAACTTGTCCTTTACATCTCCCTTGCCAAGCTTTGGCACATAGGACTTAGGGACAGGTTTACATGAGGAAAGCAGAATCTTTGTGTTAGAAGAAAAGAAAGAAAAGAAAGTTTAAAAAGAAGAAATTAGGCAAAGATTAAAAAC-------AAGATACAATAT--------TTAT-----CAAAAGATAGAAATGAGTTTCAACCCTTTATTTGGATCATCACAGCCTGATTAGATATTCTCTAAAACTTAAGT--------CAAACTTACAGAAAATATGAGTGCAGAAATTTTATTAAATCAAAAAATTTTCAGAAATGAAACCCCAGTTAATGTTAGCTTTTTACTGAGGCTGAAGGACAGTAAAATATAAAAATCAGATATTGAACTCTAGCTAAAAAG-----TCCATTTTTTTCC---ATCCTATTATTAAAGATTAAAATT
s HiC_scaffold_1 138991650 3335 + 233722169 TTTTTCCTGTGCTCACTTTAAATCATTATGAAACTGGCAGAAGATGGAAGAA-GAATTTTCTTCAGTAAACAAGGAAAAAGATGAGCTTGGGTAAGGG---CCGTG-TGTCCGTGTAGTCA----CAGAGG----------------ACAGACCTTCAGAAGCTACCAGAAAAGAGCTGCTTCCCAGCTCGA-----AATCATGGAAAGAAAACTCCTTTTGCTTCTTCCCAGGTCAATTCTTTTGCCCTTTCTTGTTTCAAGATTCCTTCCCCCACCAataacttctctttttttaagttaatgggctttaacttaaaaaaaatttgcccatcaagatatctttaaaaataagcagATACTATCAAGTCAGGACTCTACCTCagcagtactctggaggctgaggagggaggatcactgtgaatttagggccagcctgatctacatagtgaactcaagggcagcctgaactacatagggctcaaaaacattttttttattctaacaTCCAATACACAAGTCATATTCAATTTTAATTCATCATAAGACCCCAAAATCTTAGAGCTGATAATT-TCTTGGCAGTCATTCATTCATCCCCAGTCCCTGAAGGCAGAAATCCCTTCTTACAACGCTTGTGCATATAGATCTGTACAACTGGGGTTTGTAAGCCATTTGAGACTCTTGACTATCTTTTCCATCTTTTACTCCTTGTATTCAAAGATACATTAGATTATAATAGACCTGAGTGGAAAATGTACTTAGATCTTAAAATTAAACTTTGCATATTTACAAGCTGACAGCACTGTTAATACTCTGCCCTACCTACACAGCTTTAGTTTAACAGACTCCAAAGTTTATTAACCAGGATTCTCTGGCTCTCTGCCATGTAGCAGGTATTTGGAGTAACTAAAGAAAATGGATATTTTTAAGGAT-----------------------------------CATATTTTGTTTGCATCACTCTCTGAGAATTCTGTCTTCACCATATTCAAACTCACT-----TTTTCAACa-tgcacaattttttaaatttttaatttttctttcttcttttgagacaggatctcattgtgtAGTACAGGACTTG----Aattcaatatgtagcccaggctggcctcaaac--tcacatgatgatcttcctgcctcagcttcctaaattctggaattataggcatgtaccaccacacccagcccacacagacaactaaaaaacaaacaaacaaacaaacccaccactacctatgtatttcatttctgaGGTTGAAAAGCCTCTGAAAATGGTGCTATAAAATGTTGGATACAAGCCAGGAGTgctggctcacatctgtaatc-ctagcacttgggaaactgaggcagggggatcactgtgagttccaggccaacct-------gagctgTATAGTAAG---------------------CTTAatgccagcccaaactacatagtgagattgtGTCTCAACCAACAAA-AAAGAGAGGCTGTCATTCAAGTAT--GCTATTTGCatgtatgaaa-------atgtcacaatCCTGCTATTCTATATAATATATgtgaata-------------aaagaattaaaaacaagccagggatggtggcgcacaactgtaatctcagcacttgggaggctgaggcgggaggatcagtacaagtttgagaccagcctgggctacagagtaagctcagtgccagcctgaactacatagtgagaccctatctcagaaagacaaaaaataaataaaaaataaaagct---------ttaaaaccgaaaaacttaaaaatagactAACCTC-------------------------ATGTACATAT------GCACT---ATTTTCTGCCA----AACGccata------tattttaattacattgtat---------tctctta-----ttttgtaacttacaaa-ata-----------------tataatctatgtatg---tttataatttatattctcataattttatttccttgcaaAATTTCACTGCaaaatgaa--------tgttaaaattaATGACTATGAAATTTGAATAAGTATTTTCACTTAAGATACTGTTGTTAGGTTAGCTGC-ACTAATAGGTTTATATTGCATGAAAGCATTTTAATTAGGAAACATAC--ATTAGTTTTCCTTTGGAAAATTAGTTCCAGAAGCAAGTACCCACTTAGCGTTGAGTATGTACCTGCTCAGCCCTTTTTGCTAATTCGCGCTGTATCTTCCTCTTTTCTAGCATATCCTGCTCGATTCTGCGTCTCCGTTCCTCCTCCGTTCTCTTCCTCTGTTCCTCCTGTCGTTGTTTCTCCATTTCAGCAAATTTACCTTTAACAGTACCTGGGAGTGCATG----------AAAAGAACACTC---GCTGCTTTGCTGGGTTTCTCTCTTCCGTGATTTCATCTACGGTGGTGGACCCCGCTGGCTTCTTACCTGTGAGCTTGGGGACGTAAGCCTTTTCTACTTTGGAAGCGCCTTCTTCCTCCTCGTCAGAAGCAAGCATGTCCTTAATCTAGGCGGTCAGATAACTCAGGGTGAGCGCAGGGCCCAGGGGAGGCC-GATCCTGACAG----------CTGCCCCGCGGCCTGCAGGGGGCGCCCCCCAACACCCCAGGG-----TGGCGGC----------------------------------------TGCAGATTATA-------------------AATGGGCTCAGAAGGGCAGTAGGGAGCCCTCGTTAGGAACCAGACCCATCGTCACCGTCTA-TGAAATCTAAAGTGTTTAAA-CTTCATGAATCGCTTATGACCTGACTTGCCCGCTTCATCTGCTGAGACCAAGAACACCCACAGGTGACT---GGCACCGTAAAAAGCAA--AACCGCGCA-AGGGCCACTGCTCAGTGTGTGCACTGCGAATTAGCTTACGGGTACAGAGA--------AACCGTTCATTCTAGCGACAGGAACGTTGCTGTGAATAGTAAATACTAATAAAGTACAAAGTTGGAAATGAATGTTagcacaagaa-agaagaaaacaacctcctgcttcctcctgttccattctctctctctaatatattgttcttttcttctttgcttttcgTCTCTAGATCgcctttggtttctttcttccctGGCTCTCTGCATGGCTTCAAACTTATCCTTTACATCACCCTTGCCAAGTTTGGGCACATAGGACTTGGGAACAGGTTTAGATGAAGAGAGCAGAATCTT--cgttagaagaaaagaaagagaaaaaagttaaaaaaataaagataggcaGAAAATTAGATACAGACAagaatatgcaatataaaaatacttattgaaacagaaagcagaaatgaGTTTGAAAAC--TGTTTGGAATGCTACAGCCTGATTGGATAATCTCTGCAGCCCCAGTGCgcaaaacaaaattacagaaaatg-----gaagacattGTAGTAACATAAAATTCTTTAGGAAGTTTGGTT----TTATGAGTAGAATTCTA------CTAAATACCAATACAATGTAGCAGTCCAAAACTGAGGTCCACTGAGAAAACAACCTGTATTTTATTGccatatttcattattaattattCAGATt

a score=5160
s chr3           152255264 108 + 160039680 agagagagagaTTT----ACTTACCTCTGCCTTTTGCGAAACGTCATTCATGTTTGCTATATGTGGTTATGTGGTTTGGGGCTGAAGCCTTGTATATTTTTGTACCTGAAAA
s HiC_scaffold_1 138995905 107 + 233722169 aaaaaaaaaggttttaagaCTTACCTCTGCTTTTTGGGAAATATCATTCATGTTTGCTCTGTGTGGTTTTAAGTT-----GATGATGCTTTGTGTGTTTTTGCacctgcaaa

a score=19874
s chr3           152263856 2079 + 160039680 TTCTCATAGGCATGCATAACT------GATAGAGTTTTTAAATACTTTTTATTCTTTT--GGGGTTTTCAAGATAATAGAGCTTTCTCCCCACAAATGGAGCCCGT----CAGTTCAGGC-ACTTGCTTTCTAAGCAAACTAAATCTATTATgtctctattatatacactggctatcctgaaacgagctatgtagaccaggctggcctcaaactcTCTCTGCATGTAGTTACTCTCTACAATGTACACACATAGTTGCCATGCTTTTCACAAATGAAGCCCCAATCTAAAGCTTCAAGTGAGATTTCAGGGCAAAG--TCCTCTCCAAAACCCAGATAGTACATTCCTTGCCTGATGCTAAATATAGTCTTCTCACAATGACATACATTTTGACAATGATCAGCCTTACATGTCAAAAATTTCT--AAAATAGCACAGATTCCATTTTAAGGTAAGCTGG----------------------------------------------AAATCTATTAAAACTGAATTGCATCAAAAGCTGCAAGAAGGAAAAGTAGATTTAAAATAATTGTGTCGC-ACTTTTGCATTGTGCTCTCCAAGTCAAATGCTGCAGGTAAAATACAAAATTGTACACGGCTTTCCTTAAACGAGCCCTCAGAAGCACCAGGCAAAGGACAGTGCT--GagctgggcctcagggtgctggcctgtaattccaactgcgctggaggctgggacggtcacagtcctgcctgccggcactaccgagttcaaggctcgcctggaaaacctagtaaaaTAGATAAGGAAAGAACTTAGAAGCAAGAGAGCTTGCCTAGCAGGCACCAACTACACAGCATGAAATCTGTTTATATTACCACCTCCGCCCCCACGCACAAACAAAAGACTTTCCTTCAGTTAATTATGCACTTTCCCCATACAAACACACCCAAACGCAAAACAAACAAAACAAAAAAACAAAAACATGCAATTTGGATTTTCTTACAGTGGCAGTTCAACATATAAATGAATAATATTGGGGGAAATTTTATGTAGTTCACACACTATCGTGTGACCAAGACAGTCTAAA-----AACTTCGTTTCACAATACCG---GGAACATACTTCTGA---GACTCGTGCAATGGGCCGCGCG--------------GCTCCTATACAAAAGTTGGTTGATG--AATGACGCCCC---------GGTCAGAAAGGTGATTT----CTTCGTGGGGCTTCT--TTTCTCTGCCTGTCTGTCTTTTTCCAAGGGTAGTCACTTTGTGAGGGCATGCCATG-TGCTATTTTTACCACGTTATCTAT-GCTCAACTCCTTGTCCACATTGTGGCCT----TAAAAATAAAACGCTTATC----------TCAAGCCACTGAGCAATCACCTAATCTCTCAATTTGCTCCTTCTTCATTCAGACACACACACAAAGAGAGAGACCTGtatgtatgtgttatgtatatgtgtatataaacatatatgtatatATTACTCTTGAACATCTCACATATGATGCCTTTACTCTGACT---------------------TTTAGA---------------------GCTAGCTG----CTCAACCTCCAAGTGTATCCCTG--------TCTTGGCACTGGGGA-ACAATTTGGAGGCCGGGCATGGCAGCCTAATAAATCCTTAATTTCCCCGCTTCCACGGACCCATCCGCAATTTCTTTAAAATCTCA--------------------GCCACAGCTGGCGGAGTCCGCAGTGGGCACGTGTTGGGTGCCACA-GTGAACTCGCCCGCTCGGACCC----TAGGGGTCCCCGGCGGAGAGCGTACACACATTCGGCTCATGGAAACACTCTCCCCCAAACTCAGCCGCCCAGATGCAGGTGGAGC-AGAAGCGCCCGGCCCGGCGAGGGACCCCCAACCCCCGCAGCCCAGGATGGTCTGGCCGAGCGCAG--------------------------GCCACCAGGAGGGCCCGGAGCCCCGCCGCGTCCgcccagcccagcccagcccagcccTCCTACCCGCCTGCCGCCGCC-----CGGGCGCCGCTCCTCCCGCTCCGCGCTGCGTGTCGGGCTCTGCGCGCTgcccccgccgctcccgccgcccgagcccgctggccgccgcgcgccAGCAGCAAGTTTCCATAAAAGTCCTGGTGCAGCGGCTCCCGCATTCCAGACGGGCCCAGCGCCCGCTGCAGCTGTTCCCGGACCAGGCCAGTCCCCACCCCCACCGCCGCGCAGC
s HiC_scaffold_1 139007258 1957 + 233722169 ttcttttagacATATACAGCTCATCCATATTTAGTTCACTTACACTTTTTATTCCTGTAAGGTGTTTCAAAGATATCAGACCTTTTTTTC-ATACATGAAATGCATATAACATTTCAGACCACTTGGGTTCTAAGCAGTCTAAACC----------CCAATTCATA------------------------------------------------------------------TCTCCCAAATACACAtatttagttttgattttgttcACAGATGAAATTCTAACCTA---CTTCCAGAGAAATTTCAAGGGAAAAACTCTGTTCAAAAACCTAGATAATGCATTCCTTTGTTG-TGCTAAATATAGTCCCTTCAAGATGACATACATTTTGACAAGGATCAGCCTTCCATGTc---actttctcaaaaatagcacaGATTCCATTTTAAGGTATGCAGGAATAATTGCTGATCGCTCCATtccatttgaaaatgaatttaaacataAATCTATAAAAAGTGAATTACATCAATAACTGTAATGAAGAAAACGGGGTTTTAAAGAATTTCGTTGTGATTTTTGCTCAAGGCATTTTAGGTGAGTTGTTGTACGTAAAATA-AGAATTGcatacattttccttaaaattattcCTCAGAAGCATCAGTCTCAAGACACTTTCAGAAACTGGTGCTGAGGAAGAAGAATCTTAAAT-CAGCTACAATGAATAAT-------------------------------CCAAGTTC-----------------------------------------ATTTATACCAAAGATATCTTtcct----------------------taacattttttt------------------------------------ctttcgttTGATTAATTATGCATTTTTTCT-TACTGATACGCAGAAaggcaaaagaatttttaaaaatgaat-----------atttggaGTCTTTCAATGCAGCAATGTAACCTGTAAA-----------AAGTGAA---TTGCGCGGTCCGATTAATCACATGTGACTAAGGCGGCATAAATAGTGAAGCTGATTTAATCACACCGCCCTCGACATAGCTGTGCCATGACTGGCA----GGGCCACGGGCGCCTGCTCCATGAACTCATTAACAGAATTTAGCCGAGGTTGACGATGTTCCCACCGCTGTGGTCAAAGCACTGACTTCCTACTTATTAGCGTTTCTTCTTTCTCTACCTGCC--TCTCCTTCCAAGGGCAG------TGTGCACACGCGCCCTGATGCTATTTTTATCCTGCTTTCTCTCTCCCAACTCCCTGTCCACGTTATGACCTTTAATAAATATAAGATAAATATCCGACTCTTTGCAAAGCCACTAACCAA------AGCCTTTCAGCTTGGTTCTTTTTCTTACGAATAC---CAGTAATA-ACACTCTTCTACAGATGTGGGACGCGT-------TACAGTCAGGCAGGCAGCTGGTGTTTCCAGTCTCTAAGCCAAGGGTCATTCTCCCCAGACTGAGACGCGCGACCGGCAGGGGTCCAGGCTGGGCCTGCAGCATCCCGCCGCGAGCAGAAGCCCCAGACCCCAGGGGAGACCCCGAGTGGAGACCCTGG--CTGGAGACACCGGCTGGAGACCCCTCGTGG---------AGACCCTGGGTGGCCACTCGTGTGGAGATC---CCGCG------TGGACACCTCACGGGGAGACCCCGAGTGGAGATTCCGGCTGGAGAAGCCAGGTGGAGACCCCGGGTGGACGCCACGCACGGACACCATCGGT-GGACACTGCGTGGAGACCCCGGGTGGACATCCTGCGTGGAGCCCACGTGTTCGATCACTGTTCCCT---CCCGGTCCCC-----GCAGACCGAGCTGGCGGCGCGCGGC------GGGCACCCCGGAGCTCCCAAGTCAGCCAGGGCGAGAAGGAGCGcagagccgcggggagcggacgcGGCGATCGCCGCCCGGGGAGCCCGGAGCCCGGCGGGACCCGACcgtc----cccaccccagccctctcTCTTACCGGCCGAAGCCGCGGACGAGCGCAGTCCTGGCCG---CGCGCGG------AGACACTGAGCGCCGTGCGGGCCG--------GAGGGGGC---CTGGACGCCGC-CGCCAGCCGCAAGTTTCCATAAAAGTCCCGGTGC-GCGGC-CGCGCATTC-------------CTCCCGCCGCAGCTGCtgccg------------ccccgccccgcccgccgCGCCGC

a score=23031
s chr3           152275317 1704 + 160039680 AATGGCACGGGTCTACATCCTACATCTAATAA-CGATTTACATAACTGTGATGTATCTACACAGTTACAATCTTAAAAAAGTAAACTTCTTTTCACTTTTTATTTTCTCATCATTAACCTTACTCTAGGCACTTTAATCTAAAAATGCATTATTTAAAAACCCATTTCACATCCTTTTGTACACTTCACTCTTAAAATCAACGCAGCCCACTTCAGGATAAAGAGTCAGTGAATCCAATCCACTGG-----TGA------------AAACATGGTA---CATGGTCTTAAAGCAAAATTAATGAGACCTTGAAAATATATAGTGTACTTGGAAGGTTACT-----TATAATAACCCGGTTGCTCAT----TTATCATAAGGACATAAAATACACTCCCATAGCATTTAAAATATTTGTGTTTTATATC-TAAGAGAAAAA-------TTCCTTTAAAACCTA-----AGCTCAAAGTATGAGTATTTTTAAAATTTATGCATAACATGACAAACTTTTAATGTGATAAACTCTATGTGAGTGATTAAAAGTCTGTTTTGTGAAAGGAGAGAGGA--AATT--------ATCTTACGCTAAA----GTCGGAAACTGTAATCCAGCCTCTAAGTCACATCTAAGAGAGGATACATTTTTAATTCTTTTTTTGGTAAATAAAT--TATATTTTCAAGTTTAATATTCATCTGAGGGAAGATGAGATAAACTACTTCAGGGTCT---------------------CATAACTT----------------------------------------------------------CCAGGACAACAGTAATATCCT--------GTGG-----------------------------------ACTGCAGGTGATGCACCCCAAG--TGTGCGCTGTAAACCGCTCGCT------TCATTCAGGTGCTCTCGCACACCAGACCTCGGTGAGGATGCCTTCTTTGACTCAAATACATTAGCAA-----------ACAGACAAGCTGTAGGTAAACA----CGTCTATTGTCTACATTCTATTAAAGAAGCAGTACCTAAGGTTAAGAATACATT-TCAGGCAAGGTTAAGTACGTTGACGCTAGAAGCCGTAGATTATTACATAAATACAGTCACCTT----GGGCTAGTGTATTCTCAAGGAGCAAAGCATCAAGACGTGTTTTGAGATGACACTGCAGATTGTGGGAAGACAATGAACTC----------CTAGAGCACTGGCTTCAATTCAAGCGACAGTCACAACATAATACGCATCACTTCACAACTTAAATTATTACCTAAGGATTATTAAAAAGTCTCTCTGGATCCATCG-CATGGCTTCAGCGACAAACCTCCTGCATACGTGCAGGACAATCCCCGCCCATCCTTGAGACTGTCCTCTCCCTGAGGCCACGCTGTCAGCCCTGTAGACTCTGAGGCACTCACAGTCAGGGGTTACCCTAGAGCACTGGACAGCATTCTCCAGCCACTTCTGGTCCTTATTGTACTTTGGCTTCTAAGAGCGCAGTGGGCACGGCGTGGGAGTGTCCACTCGTGCAAGTGGTGGCGTGCCTCAGGGCATCTGCACCAAGACAGGTGACCAGCAGCTCCGTGCGGCGGATGAGTAGGTGCGTGAGGTCCTCCGCCAGCGTGTCTATGCTCGAATAGCGCACCTTCTCAAAGTCGAAGATGTCTTTGAGAAAGAAAAGAACTTGATTCTGGAAAAGGAATACACAAGGC--ATTGGCATTTATTAGGCTATAATTTGTTAAAGCTTTGAACTGTTAATACTGGACCAG-ACTTTACACCAggagtcagacatcttagttttggggctggattcacatctcatgggcaaaggactttgaacaagttatttaaccttttg
s HiC_scaffold_1 139016724 1802 + 233722169 AACTGCACGATTCTCCATGTTGTACCTTGTAGTCACTTCACATAACTGTGGTACATACACAAACTTATAATCTTAAAAA-GTAAACCTTTTTTCACATTTGCTACTGT--TCATTAGTCTGAAACTAGGCACTTCaatctaaaaatacattttaaagtaatgCTTTTCAGATCCATCTATGTCACTCACTTCTAAAGTGAATA-AGCCCACTTTAGAAGCAAAA-TCGACAAATACAATTcaccaggaggctgagtcagccACCTCAAACGAGTGAGATCATAATTTAGAAGCAGAATCTATGCAGC--TCAAAGCTTCTAATATACTCTGAAGAGAAGTCTCACTAGAACAGCCCActtgttcatgtatttatcataaagacacaaaatatactttcatatcattaaaaatattt-cattctatatcagaagagaaaaaaaaaagccttcccTAAAACCTGTTTACCATCCACAGtgtggttattttaaaaatatgggca---------AAACTGACCATATGGAGCTCCGTGGGTCAGCGA---AAGGGCCATTCTgcgggaggaggaaggagaaattgtgttaaaattttaagttCAACATCTTCAGGTGTTGGGAGCCAGGCTCAAAATT-Catccaaaaagggaaaaatttaaa----ttaccttaataaacaaatattgtattttaaa--ttaatattcacCCAAGATTACATGAAGTTAATTACTCAAGTCTCTAGTgtaatttagggctggggatatagctcagtggcatggttcctgcctggcaagcacgaagtcctgagtttgatcccagcaccataacaaaaacaaaaacaaaaccctcatCTAGTGTAGCTTCTGAAGACGAAGAattgacagatttttttaaaactacagttAATGGAACATAAAGTTGTAAATTGTAAACTTCTCAGTGTCAGTTCATTCAAATGCGTT---ACAGCAACACTCAAGTACTACAACTTGTTTGATGCCAATACAGGGGTAAGTGCATGGACGACAGCTAAGCAGCACACAGAAAGCATCGTGCGGCATCTAC------TCAGCGCGACCCCACCAAGTG----GAAGACGCTGTCAGGCACCGCTGGGTGTGC-GGCGCCGG--------------------------GTCACCTCCAGCGGCCGCGGGTGTTTTCAAGATGCAAAGCATAAAACCAGCTTCTGAGAGGACA--GCGGGTGGTCGGAGACCTGAGGGCTCAGCGATTCTCTCTGAGTGCTGGCGGCA--CCGGAGCACTGTTCTTAGGAAATACAAACAATTCCG--ACTGAAGTGACTCCCGGAGGAC-ACGGGGAGGACCCT--GGACACACGATCAGGGACCCAAGGACCAGTCCCTTGC-------------------TGCCCACTCGACGCACTGGGCT-TCCCTGAGCCCCATCCTCCAGTCC---------------GCTCCCAGTTATG---CACGCCAG-GCCGTGGCCACCACAAGGCGGCCTCTCGCTGTGCTCACTGCACTTTGGCCTCCACCAGCCCCGCGGGCACCAGGGGGCTGTGGCCGCCCAGGCAGCCGCTGGCGTGGCGCAGGGCGTCGGCGCCCAGGTAGGCCAGCAGCAGCTCGGTGCGgcgcagcagcagctgcagcaggtcCTCGGCCAGCGCCTCCACGCTGGCATAGCGCACCTTCTCGAAGTCGAAGATATCCCTAAGAAAGGCCAGGACTTGATTCTGCAAGAGA---ACACAAAGCAGACCTGCGTTCATCACAGCAGAGCCCGGCAACGGGAAGAATCG-------TGTGCAAGCACCCTGAATGTGGGGGGAAATGCCTGGGGCCCAGCGCTGCTTCCAGACCTCAGTGGAAAAGGGGTCCTGGGAGACTATTTAAACCCTTG

a score=13150
s chr3           152278832 269 + 160039680 ACACAAAAGTAAACAACCTTAT----TTTATTCTTTAAAACAAGGT-TTCAATGGCTGAACATACCTTAAAGAAGCAACATAAGTCATAGAGAGAATTTCTAGGACCCAAGAAGCCCCAGGCTAAAACAGGGCTGACATGCTCACAAATGGCATAAAAATGAGCGAAAAATCCATCTGAGATCTGTTGGGAAACAAAACGCAATCAGTATATTT-TATCTTCTTAAGTTGACTTTCTCTAGTAATGAAACATAAACTGCTAGCCATTATGTGGTC
s HiC_scaffold_1 139020109 270 + 233722169 ataaaacagaataaaaccttaCCCACtttttgatttagaaaaaaatacgCAATG----AACATACCTTGAAGAAACAACATAAGTCATAGAGAGAATTTCTAGGACCCAAAAAGCCCCAGGCCAGGACAGGACTTATGTGctcacaaatggcataaaaatgggcaaagaaccCATCTGGGATCTGTTGGGAAGTAAAAGAGAATCTGGTTATTTCTATCtctttgtactt-cttcctctagTAGACAAATTCAAACTATTATCCATTATATAATC

a score=4769
s chr3           152283777 85 + 160039680 TTACCTTCATCTGTTGCCTTTTCTGTTTCAGCACTGACCAACAACTTGAAGCCACAGCCTAAATATAGACAGAGGGAAAAAAGGC
s HiC_scaffold_1 139022771 82 + 233722169 TTACCTTCATCTGCTGCCTCTTCTGCTTCAGCACGGACCAGCAACTGGAAGCCACCGCCTGGGCACG---CGAGGGGAAAAGCGC

a score=12603
s chr3           152285149 246 + 160039680 TCTGACCATTTTCCATCAGACCAGAACGGCAA-AGAAGGGAAAT-GCCACTTACGCTTTCTTTGAAGGAAGAGTTGAGCCAGCGATTGTTCACTACGCTCTGTATGGATGTCGGTGGGTTTTCTAAATCTTCAAAGGAATCCATTAATATAAAATCCAGAACCACGTCATAAAAATTTAAATTTTTCACCTGTATTAAATTGCAAGATAGCAGTGAG----TATTACAGAGTTCTGGAGTCAAGCctgcgct
s HiC_scaffold_1 139024483 252 + 233722169 TCTTCCCACTTTTCATCAACATTGAATGGCCACAAAAGGCAAATCACCACTTACAGTTTTTTTGAAGGAAGACTTTATCCAGCGATTATTTACTACATCCTGTATGGACATGGGGGGGTTTTCTAAATCTTCAAAGGAATCCATTAATATAAAGTCCAAAACAACATCATAAAAATTGAGATTTTTCACCTGCATTAAATTGTGAATTAGAAATAAATCATTATTATAGAAAGTGGACATAAAATCTGAGCT

a score=10379
s chr3           152287413 318 + 160039680 TTTGCTATCAGTTAAAGAAAAGACAGAGACCCAAAGCCTTGCCT-GTGTGAACACGCGCAGGGCAGGAACAGGGAT--------TATGTCATTTGC-TTACCCCTCTGGCAGCAAGTTCCAGCTCAGTGCTATCCCAGTGATCAGTCTGCTCTAAAAAATTGATCATTTCATCAAAAACATCTTGAAATTTCTTTGGATTCTGCAAAAACATAGTGTAGTCAGAACATACTTTATAACAAGACAAGCCTACAAAATAAGTTACTTTTCAAGAAAGTTGAATCAATTACTCTAGAAAATATTTTCAAATCATGCCAAGAtt-tttcattt
s HiC_scaffold_1 139031826 304 + 233722169 TTTACTGTcatttaacaaaaa--caaagacatgtGACCTTAACTCATGTAAATAAGTGCAAACAAGGAAAGggaataaatattataaaacactTGAATTACCCCAATAGCAGCGAGTTCCTTCTCAGTACTATCCCAGTGATCAGTCTGCTCTAAAAAATACATCATTTCATCAAAAACATCTTCAAACTTCTTTGGAttctgttaaaa--------agaaagaagttattcT----CCAAGCAAGTTTGCAAGAT--TTTATTATCTCAGATAAGCGAATCAC---------GATACATTTTCAATGCAtgccaaatttatttcattt

a score=8501
s chr3           152288998 354 + 160039680 TTTAGTCTTCAGTTAAAG-AAACCAGTAAGAACAAAACTTGCTTA-GAGACATATTTACCTTCCGTGCTTTCACAATTAAAGCTGACAAAATTTTCCTTCCACTTTCAGCAAGGAATGACCTGTTGTCTGCTTCTGCAAGGATTAGCTGAAAAACA--------CCAGTCCACAG-----------TGTGAAAATGAG----------------TGATGTCCCGTG-----------ACACATGGGTGACTGGGCAGTCAGGGCAGTGGATGTGATGCTAAGTCACTACTGAAGGCA--GAGGAAGTCCAGATTCAC--AGAAATGGAGACTTATGCTCAGTGATCAAAAAAGATTCAGGGCGGGTAAATTTGATCTTAAATTCTGTTTCAGACAATTAAATATCT
s HiC_scaffold_1 139032940 398 + 233722169 ttcagcCTTCAGTTaaaccaaaacagtaataa-aagacTTACTAACAAAACAAGTTTACCTTTTGTGCTTTGACAATTAAAGCTGATAAAATTTTCCTTCCACTCTCAGCCAAGAATATCCTGTTGGATGTTTCTGAAAAAATTACCTAAAAAAAAAGGCATTcccaaacaaaagtaaaaaagacatGTGAATCTGAGCAGCTAGCCAACTTCATAGCGGCTCATACTTCTCTATACACAAATCTGTAAC---ACAGTCAGCGCACTGCATGCAGCAGAAACTCAACAAGAGGAGCACGGAGAAAGCACAAATTCACCAAGGCATAAAGAGCTCTTCAAATGTATaataagaaa---agaggaggagagtttcaatttaaa-tctgcttcatataGTTAGAAAACT

a score=17958
s chr3           152290212 708 + 160039680 TTTCAAGCAGC----TCTGTCCACACTTGCAGCATCACAGCATTCTGTCTAGACGGAGTGTGGTAGGCCTGGAAAGGTGTGGGA-AGGACAGCG--AAGTGCAACAGCATGGGAGGGAGAATAAGGCCCCGCCGCTGCAGGCAGAGCAGTGGGGAGAGCTGCCCTGTGCACAGGagggactgcgccagggactgcgccagggactgcgccagggaGAGGCCGGCAGTGCAGGCCGCCTCAGCGCTCACAAGTACCTGAAAAGCCTGCCGGATACAGTGAAGTTTGGCGAGGAAGTCACTGTCTCCCAGGCACTCCAGCATCTCCGTTCTGCATCACGAAGAGCAGAGAGTAACTGTTAGGTTCCAGCCACGAGCAAGTCTCCCACAGACCTGGACCTAAGCAGG-------------CCCTTAATGGAAAGCACATGTC--CTCTGCCACTGGCAGGCTGCACAAAAAT------------CTACTTGGACCAAAAC--GTATCTTTCCCATATTCATAG---CATGATTTAATAATTGTCACACAAAAAACCAA------CAGTACCTTACTAAAGaaataaaataataaaataataGCTGTGAACTAAGCTGGAATGATACCTCAGCACTCTGGAGTAAATTTTTCCTTCTTCAACTAAATGCATAGCTTCTTCGTAGAAAGGGCAGGGACAAAAAGACTCCAGGCTGAAGGTCTGCTGCGCTTCTCTCTGCTCTGCGAGCTAAGGACACA
s HiC_scaffold_1 139033685 691 + 233722169 TTTGAAGCAGCCATTTTTTTGTACCATTGCAACATCAGGATACCCTATTCTGACCAAGTGTG-TGGCACTGGGGAGCCATGGGAGAGGATGGTGGTAAGCGGGCCAA-GCAGGAGGG-----------CAGCCCACACAGGCTCCGCAGCAG-----------CTGCTAGCAGGAGGAGGTAGGGCAAAGCCC-TGCCCTGGTCTGGGACGGGC----TCCTACAGAGCTGATGGCTGCTAGGGCTACAGATACCTGAAAAGCCTGTCGCACACAGTGCAGCTTGGCCAGGAAGTCGCTGTCTCCGAGGCACTCCAGTGCTTCAGTTCTGCGTGAGGAATGGGAGA---CAAACGTCAAACGTCACCCAAGATCCAGCCCGCCCTACACCTGGACTCACACAAGGCTTCATCACAGCACCTTAATGTAAAACACTCGTCTGCTCTGT-GCTTGCAGAACACATAAAAatggtctttcttttttgcttggaccaaaatcattatttttccCA-ATTCTCAGGAACACAGTTTAATATACATCACACACACAGCAACGCACTTTGGTGTGTTTCACAAGGAACCAAA-------------------------GCTGGCACCGTACCTCAGGACTCGAGAGTGAACTTTCCCTTCTTCAACCAAGTGCATGGCTTCTTCGTAAAAGGGGCAGTGGCAGAAAGACTCCAGGCTGCAGGC---CTGCGCTTCCCTGTGCTCTGCGAGCTAAGAACGCA

a score=7085
s chr3           152297082 272 + 160039680 AGAACTTCCTCACCATGAACACACCTTGTCTTACCTCTGTTGCTGAAGCAAAGAGATCTGCTGAGTCCATGTTCATGGCGTCTGGCAGGCCAAGCTCATCCATAGTCTCCCTCAAGCTCATGTCTGTGTCTTTATCTTAAACGTAACAAGGGTGAAAG--TCAGAACTG--TTATTCTTTGTCTCTGCCATGTTCACTTGATATAGTGTGATTTTAGCTCTACTC----------TTTATCCAGACAGCCAGGGCCTAAGGGACACCAGTAGCAACTGCAGTGGGC
s HiC_scaffold_1 139039876 277 + 233722169 AGAACTTCTCCCAGACAGACAGGGCCT-TCCTACCTCTG---CCGAAGCAAAGGAGTCCGTTGACGCGACGCTCAAGGTATCTCGGAGGCCGAGGTCATCCCCACTTCCCTTCACTGTGACGTCTGTATCTTTATCTTCAAAGTGAAAAGGGTAGAAGGTTCAGAAAGGGACTTTCCTTTATCTCTGCCATATTCCACTTGTACAGTTTGGGTCCCGC-CTGCTCccagtctttatttatttagcgTGCAGAGATCTAAAGGGAAAGAGGGACGA----AGTGGGC

a score=13727
s chr3           152305913 1071 + 160039680 AGGCAAACATCAGG---TCCCTCTGTCCCTGGAGCC-----CTCAGCACTGTACTGTATTGGCCAGCACTGAACCTGTCTTGAGCTGCAGAAATGAGGCCAGCTCAGCTGCATCTTGTGGTGTTAGTATACCCTCTGAAATGAAAATTGCGAGGGTT--CATACTGGAGCGGAATCACCTTGC-ACATCTCTCAGCTGCTGTGTAACTCGTACCCTGTCTATTTAGAGACCTGAGGGCATTACTTAAGCCTGCAGTTCAGCTCACTCCCCAAAAACAG--CCCCAGCGAGGCTACTCTCCTGTGACAGTGACTCTGCAG---AAGAGGAGACCAGTCTCACAG--CACCAAGTCTGGGATGCTGGC-----TGAGAGGAGAGGCTGAGGGACTTCTGCTCACAGCCAAGCTTACTCAGGGTCTCTGGATGTTCTATCTGGCTACTTACCAAACCTGAGA---AATGTCTCTCCCCTGGATAGCAGGTGCTTTTTCACAGTTTTTCTTGTTCTCTGTCTGCCAGAGAGTC-------------CCCTTAGAGGAA-CTCTCATTGACTCAAAGCAAAATACAAAACCCCAAGAGACACAAGCAGGTCTATAGAAAGGAGCTCCAGGAAAGAACACTGACATCATGTGCACCAGCCACCCTTCCCTAATCTCCTACAACACATGCATCTCACTTGACATCTAAATACTTTTCTGTGGCTCATTTTTGCTTAAAGAAACAAAGTTCTTGCG---TGACTTCTCTGCCCTCCCTTCTAGGTTTACTGCTATGTGTACTGTTATGCT-ATGCATGTGTCTTCTGTAGCTTGATTCCATGGCACTCTCTGCTCGAGATGCTCTGTCTGTGATCTTCCTGGCAGGCCTA-CTGTGTGTTTTCAGGTTATTCCTTCTATGAAGCCTCCTGTAA-----------GTGTCCAAAGAACACTC-----ACAAGCTT--TTCTTCAGTGTTCCCACAGCACGTATACACATG---------GGCTAGGCTACGCTGCACTGCTTAACCTGCAACGGCTGTTAAACACCAGACTACAGATGACCACA-ACTGTAGCAAGAGCTTCATTTTTCTCCCCCTGACACCTTTTGCCATGTTTTCTATACACAAAGAAATT
s HiC_scaffold_1 139048732  996 + 233722169 AGGCAAGCACCATGACTGccctttgtttttgagaccaggGATTTTTCACTGTACTCTTGT--------------CTATTTTGACCTGCATAAAGAACTTCAGTTAGGCTTCATCTGGGAGGTAAAATACATCCTTTGAAATCAAGATTATGAGCCTTGCCACATGGGAG-GAAATTACTAGGCCAAATTTCTCCTATGTTGTGCAACTTGTACTCTGTATATTTAGGGATCTGAGTATACAGCTTAAGCTTATAATTGATATCACTCTCTAAAAATAAGCCCTCAGGGAGTTTATCTTCCCACCACGGTGATTCTGCAGGGAAAGAAAAGGACAAGGTCATGGCTCATCAACTCTGGGCTGCTGTCCCATGCAAGATGACAGGTCCAGGTA-TTCCCCTCAAGGCCAAGCTCATTCAGTATTTCTAAAGGTTCCATCTGGCTGCACACCAAAAGAGAAAGGCAACATCTCTCAGGCAGTCAGGAGGTCCCAAGTCACGGCTTTTGTTATTC----CCTGCCAGAGAATCTGTATTCAGTACTCGGCTGGAGAAAGCTCTCATTTTTGCCTAG-AGAATAGCTCACTCACTCAAACACTACCA----TGCAAAAATGAGCACGAAGCTGGAAGCCT---------------AGCCAGCCTCCC-------------------ACATCTCTC-----------------------GGCTCACC--------------CCACGCTCTTACGTCCTCACCTCTCTACACTCATCTCCAG-----------------CTGCTCTCCTCATACATGACATCCCCGCAACGT-ATCCAat--cacttcctg---------------------tcccccaggCTGCCCCAGCTGTCCCTGCCCCTGTTATTCCCTCTG--------CCTGCAATGTCCCCCTCTGTCTTCAAGTGTCACTCTTGTGACATCTTTCCTTCTTCATCAATTCCACAGAACTCCATAGCATGCTGTTATGTAGCT--GCTCGACTGCGGCAGGTAACTTTCAATGCCCACTAAGTACTGGACTCCAGTTGTTTAAATGCCGAGGTgagactttcattttt-tccctccaATGCCTTATACTGTGTTTGACATATACCAAGAAATT

a score=11002
s chr3           152317589 172 + 160039680 AAAACCATACAAA--AGTCTAC-----TTACCAGTATCATTTGCAATGGAATTAGGGTCAGATCCCCCAAGGGTAGCCTCAAACTCCTCTTGGAGACGATACGCTCTTTGCAGTAGAGCTTCAAGTTTATGGATGAATTCTGAACTAATAATATCCTACAAAGAAAAATAACAGTAGCA
s HiC_scaffold_1 139063951 179 + 233722169 aaaaccacagaaataaaTCAACCCATCTTACCAGTATCATTGGCAAGGGAATCAGGACCAGATCCCCCGAGGGTAGCTTCAAACTCCTCCTGAAGACGATACGCTCTCTGCAGCAGAGCTTCAAGTTTATGGATGAATTCAGTACTGATAATGTCCTGCCAAGAGAACATACAGCAACA

a score=9378
s chr3           152320555 206 + 160039680 AGAAAAGGAGGCTCTGCCAGGACTCAGGCCTTCTCTTCAGCAGGCCGTCCTTACATCCACACTTTCTTCTGCAATGGCATCTCCGGCTCCCAGTTTAACAGAGCTGCAGGCTTCATCTTCAGCCTGTCTACTTCGAAAAGTCAGAGCTTGTTCCCATCGTCGTAACGCCTCTTCAAATAATTCCATACCTAAAAATGAAAAGCAGG
s HiC_scaffold_1 139064934 203 + 233722169 AGGACAGTCAGCTCTGCCAATAAGGAGGCAGTCTC--CACCCAGTC-TCCTTACATCAACGTTCTCCTCGGCAATGGCGTCACCCGCGCCCAGCTTAATGGAGCTGCAGGAGTCGTCCTCAGCCTGCCTGCTGCGGAAGGTGAGGGCCTGCTCCCACCGACGCAGCGCTTCTTCGAACAACTCCATGCCTGGAAAGTAAGAACAGG

a score=11645
s chr3           152321995 526 + 160039680 GGAAGAGGAAAG------TCacaccttgatttcagcgcaagaatgattttggacttcgggctccagcgctctgagtgaacagactgctttttccttaagcctc--tgtctatgctaaAACCTCATATTATTCTCAAGAAACTGTTACAGCTCATGATGTTACACAGGACAGACAGATGGACACAGGCCA----------ACTTAAAACTACAGTTGACTCTCTGGATGAAATCAGTGGttgtgttctgttttttatcctccacaggctggggctaaaacccagggcactaagcatgccaggcaagttctttgtgctaagcaccccccattccAACTCACTCCCCTTCACACGAAACCTGAGACCACACCTACCCATCAGGTATAAGTTCTCAGGTGTGGTCACAGGAATGTTAACAAGTCTGATGTCATCATCGTCTGCTTTGTCCCAGGAATTAGAATTTCCACAAGCACAACTATGACAGGAGTTAACACTCTGGACCTGAAATGAAGGCCAATGGAGAGCAGTTCAAAA--TCTCTTAGACAG
s HiC_scaffold_1 139068181 464 + 233722169 GGAACAGGCAAGAAGTTCTGACACCT-GATTTTAGCTCAGTCATAAT----GCACTAAGACTGCTGGGCTCTGAgtgaataaatttttgttgtttcaagCCACCATGTTTATGGTACTTTGTTATAGCACcctcagaaaacaaacacaattgGTACGGTAGTATGTAATATGCAGCTTGACTCAACACAtagaaaaaccatttaaaaccatagttgtttttctca--gaacttact------------ttttttactttcaa------------------------attaaatatg---agcatgatattt----taaaattttaccat--------------------------------aGCATTCCTACCCATTAAGTACAAGTTCTCAGGAGTGGTCACAGGAATATTAACAAGTTTAACATCATCTTCATCTGCTTTGTCCCATGAGTTGGAATTGCCACAAGCACAGCTGTGACAAGAATTGACACTCTGGACCTAAAATTAAGATGCACAGACATTATTTCCAAGTTTCTCTTGGACAG

a score=13500
s chr3           152333266 380 + 160039680 CTGAATCAACAGAGTCACATCAAGGCTGTCCTCACAGGACCAAATGGACCATAGCACTT-----TACACAACTGGAACCAGCAGTGGAAGGA-----------------AACAGACTTACCCAGACTGTCTCCTAAGCTTTTCCCATAAGGAAAAGCAGCACGTATGTGATAGTTAAGCTAGTAAGAGATACG---TAAGCAAACACAACAACAACAACAACACATATGCTCTTCTTACGGAGCCCAGGCTCTGGGCAGAGCCCGAGTATCTGCTGAGAAGCCCTCCATTCGGGTAGTTGCAACACTGAGATCCTTTCTCCTTGGTGGAGCTTAACGACAAGGTCAGATTCTGCCGACTGCTGGAGCAACTCGAACCTGGGTAGCAAACACACAGACATCCAAAG
s HiC_scaffold_1 139070965 398 + 233722169 CTGAAGCAGTGCTCCTATATCCAGGCCG-CCTCCCAGGACCCCGTGGACTCCACCACCCATGCAGAGACCCTGGGGACTATCCAGAGAAGGGCACTTATTTGCCTGAAGAACAAACTTAACCAGATGCTGTCTTAGGGTCTTTCAATACT---AAGTTACATGTGTGTGACCCTTAAGCTAACTGATAACAAGAAATAAGTAAACATGAGAAAAATAGCAACGCAT---TTTTACTTACAGAGCCCAAACTCTGTGCAGAACCCGAATATTTACTGAAAAGCCCCCCATTGGCGTAGTTACAAGACTGAGATCCTCTGTCTTTGGCGGAACTTAAAGACAGAGTCAAATTCTGCCTGCTGCTGGAACAACTTGAACCTGTTAAACAAACACACTCATATTAAAAG

a score=6029
s chr3           152333846 296 + 160039680 GTTTCCTGTACT--TCTGGCCAGCTCACGCATTGAGCGGTAGAGCACATGTCAGGTCT-AGTTCCTCTCAGCATGACAGTTCAGACCCTTCTGGTTTCAAATCCCAGTACAGTTAAGATACATGACCT-CGATAATTTCTTCATACCATGACACTGGGTAATTTAGTCATGTTACTATTTTA---ATACATAAA----TGAAAAGAATGTAGAACTGTAGTTGTCAATCATACAACAGATGTAAAAATTAAATAAAATGCTGCAAATAATGCTCGTCTGAGACCTAACAAAATCTCAGTAAATAACA
s HiC_scaffold_1 139072126 264 + 233722169 gtttcCTCTACCCATCTACCCATCCCTC-----------TAGGGCACACATCATGTCTTAGTTTTTCTTAACAAAGCAGTTAAGACCC----GGATTCAAATGC-----------AATTATATGGCCTTCAATCAGTCATT-----------------TAACTTTTACATATTTCAATTTTCCTTATGTATAAAACAGGAAGAATAACATAAAGCTGTAGTCCTAAATTACAGAACTGCAGTGAAAGTTAAATAAAGCACTACATATAGCACTTCATTGAGATTGAATAAAATACCAGTAAATAACA

a score=13627
s chr3           152335244 223 + 160039680 CACGTACCTTTTTCTGATGCAGCTCTCCTAGTGTGCTCAAGGAGGAGGTGCTCGGGTTCCCAGGGCAGCACTTTGCCCTTCTGTTTTCCCCGTCTTCTTTTAAAGTGATGGGCCAGAAAAATCACAGACACAGCACTCACGGCAGTTACCATGAACAGCTTCTTAGCTACTGGTGAAAATTTGATCTGGAAAAAATA--------GTTAAACAAAACAAAACAACCCTCCA
s HiC_scaffold_1 139075393 231 + 233722169 CACATACCTTTATCTGATGCCGCTCTTCTAGCATATTCAAGCAGGAGGTGCTCTGGTTCCCACGGGaagatttttgctttctttttcccacgtcttcttttaaaatgatgGGCCAGAAAAATTACAGATACAGCACTCACTGCAGTTACCACAAACAACTTTTTAGCTATTGGTGAAAATTTGATCTGGAAGAGACAtacttagttttaaaaaagaaaaaattatttttca

a score=8934
s chr3           152337719 193 + 160039680 GTTTACCTGGGAGAGAGAATAATACCAAGACACAGGGAGAGCAAACACTCTAACTGCGTACGTCTTCAAGGAGAACTGTGATCTGCTGACTGTCTCGTCTGACATGTCGCCTCTGTCCAATCTTAAATCAATGAAACAGGA--ATTAATCAGCCACAGGGATTTCTGGGTGC-----------------TTTATCCATGAAAGATGCAAAGT
s HiC_scaffold_1 139081661 211 + 233722169 GCTTACCTGAGAGAGAGAACAGTACCAAGACAGAGGGAGATCGAACACTTTGAGTACTGCCGTCCTCAAGGAAAACTGTGATTGGCCTACAGTTTCCTCTGACATGACTCTTCT-TTCAGTCttcactaaacaaaacagaaacatttattaGCCAGGAAGATTtctggttacttttttttttttttttttttaccagtgaAAGATACAAAGT

a score=6918
s chr3           152340227 734 + 160039680 CGCGCTGTCCCCGTCCCCGCTCACCGCCGTTCTCTCCGCTCTGCGGGCCCCGC---GCTCCGAGCGGTGTGG----TCCCCGGCCCGTCGCCCGCTCTGCCCCGCGCCCGCCAGCACCTGAGCCTCCTCGGTCTCCCAGCCGCAGCCCG-CACCTAGCAGC--CTCTGGCTGCGGGAGGCGGAGTTCTTCCGGGGTCA----CGACGCAAAGGTAAGGAAAGTGGAG-GGGCCGCGGGCGGA---CTGCGTGAGGGGCTACGTGCGAGGCCGCTCCCGCCATGTTTGTTCAGGGCAGTG-GGCTCTGGCTTAGCCTGCTGCTCAGTGGAGAATGGCAGCCCTTTATATAAATAAACCTTGTCAGAGGAGTTGGTAACTTCTTAGGACTATAGGACCGTTCAGAGAATCTGACTAAAACGATGGAGGTTTTTCctataaaaaatggccagagctaaggcgtggtggcacacgcctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcaaggccagtccggtctacaaagtgagttccaggacagccagggctacagagaagccccgtctcgaaaaaccaaaacaaacaaacaaacaaacaaacaTTATTTATTAAAGTAAACATTACAAACACACACCGCACACAGGTGCACAGACGCACATGCACACCATTTTGAGGCCCAGAAACCCATCGTGGATCCCAAATTAAGAATTTCTGGGCTGGAAATGTAGGTCCTTGGT
s HiC_scaffold_1 139084636 556 + 233722169 CGCGC-GCCTCCG--CCTGCTCACCGCC---CTCCTCGCCCAGTGGCCTTCGCCCCGCCCCCCACGGTGTTCCTTCTTCCCGCCCCCATACCTGTC--GCCCCAGGCAAGGTACAGCCCGCTCACGGCTGCCTTCTCTGCTGCAGCCTGGCGTTGAGCAGCGGCGCGGGCTGCGGGAGGCGGAGTTCTTCCGGGGTCAAGTGTGAGACAGTGA-AGGGAGAGTGGAGAGGGCCTCTTAAGAGTTTCTGCGTGAGGGGCTGCGTGAGAAGCAGCTCCTGCCATTTTTGTTAAGGGAACAGAGGCTCAAGTTTTCCCTG------------------------------------------GTCAG-------------------------TGTGAGCACCGGAAGGATTTAAT-------------GCTTTTGC----AAACCTGTCATGAACTA-------GTAACGAAGTTGGTAACTTCCAGCTGTCGACCGGCTG-------------------------------------------GTGAAT-----------------------------CCTTCCCCAGAAA----AACACACATAGAAATTCATAattatta--------------------aaacacacac-acacacacacacacacacacacacacgtacaatGTAAAACTTCAGAAACCAGTCATGGATCCCAAATTAAGAACTATTGGGTTGGTAATGTAACTCAATGAT

a score=17193
s chr3           152357796 440 + 160039680 TGTTAAGATTTTGTAATTAAGTTTT---GGGTCACCTTTTCTGTAGGTTTTGCCTGATTTGAAAAGCCTTGAGAAAGAGAAGGAAAACTGTAAGAAAATGACGACTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACGAAAGAGGACTTGATACAGAAATCTCTCGTAAGTTCTATAGTAGTCACCCCTGAAATTGCTGCGCTCACTTTCCTCTTAAATACACATCTAAGTCAATTAGTAGGGCACTCTGTGT----------CATGTGTAAAAATGTATGTTGTTAC-AGGGAATTGTGTGTGTCTGA-CACACTGACACAGCAAATGTCTCTTGT-----GTTTATTTTCCCAGGGCGCTTGTCAGGACTGTAAAGTCAGAGGACCAAACCtgtgggcgtgcctggaggtatatgtgtg---------------------------gggggtgtgtgtgtgtgtctgtgtgt
s HiC_scaffold_1 139122287 475 + 233722169 TATTAgtattttctaattaattttgaGGGGGTTACTTTTCCTATAGGTATTACCTCATTTGAGAAGCCTTGGGAAACCGGAAAAAAATCCCAACACAATGTCAACTTTTCGAAATCATTGTCCACATTTGGATTCAGTTGGTGAAATAACAAAAGAAGATTTGATACAAAAATCACATGTAAGAT-----ATAGTCTTGCTTAAA----TTATATTCACATT-Ttcctaaatacatttttca-taaattattacTGTACTTTATATTCATAGGTTCCAATTTTTACAATATAGGATATTGCTAGTGAATTGTGTA-GTTTGATTACATAAATGTAACAAatgtcatctttaaaaaaattttttttgtagggTACTTGTCAGGATTGTAAAGTCAGAGGACCAAATCTTTGGGCATGCCTGgaggtatgtgtatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgt

a score=9096
s chr3           152358278 433 + 160039680 taataacaatttttgatgtataa----aataattt--taCATGAGTATACTTTTAAAGCATACTAACTAAAAACTGAAAGTTCAAACTTTGGATGGATTTTAA-TGGAAGTATGCTTAGAGCTTTTAGTAAACCACTCAGGTATGTCTGCATTTAT-CTTCTATTGGAGGTGAGATAACATTCAGTTTGAAATACTTAATCTGGTCTTTGTGCTTAATACCTTTTAATTATGTTATCTGACTATACAAAGTAATTCAATAATTGAATTAGAACATAAAATCAAAACTTGAGTGTCAATACT-CTCTAGTACTGATTGTAAACAGAGTGCCTATGATAAAGT----CCTCCATCTTGCATACTT-CTTATAGAATAGGTGCTCCTATGTTGGCTGCGGGGAGTCGCAAGTGGACCACAGCACCATACACTCGCAGGTAGGTGTGGAAT
s HiC_scaffold_1 139123164 399 + 233722169 TGATAACAAATTTTGTTTGacaataaaaagaatttcatagATCGGCATACATTGA--------TAACAGAAAATT-AAGCTTCAAACTTTGGAAAGACTTTAACTTGTAGTACTACTGCAGAATTT--TGATCCTTTCagatat-------tttatgcttttattagCATTGA--CAACTTTCAGCTTAGGCAGctatat----------tgttta-----ttttg--tgtcttaACTGATTATGGAAAGTAATTTACTCATTAAA------CATGTAATCAAACATt---tgtaaatgtaattttaatgctG-TTATAAATATAG-ACTTGTTATAAAATACTTTCTCTTCCTTGTATAATTATTTACAGAATAGATGTTCATACGTTGGCTGTGGTGAGTCACAAGTAGATCACAGCACTATACATTCTCAGGTAGGTATataat

a score=4151
s chr3           152358641 108 + 160039680 TGCTCCTATGTTGGCTGCGGGGAGTCGCAAGTGGACCACAGCACCATACACTCGCAGGTAGGTGTGGAATTATTGCATA--CATG------GCAGTGCTTGGTGCTGGGGACTGGG
s HiC_scaffold_1 190805116 116 + 233722169 TGTCCCTATGTCGGCTGTGGAGAGTCCTTTGAGGACCACAGCACCCTCCACGCGCAGGTGGGTGCGGGGCGCGGGCACAGCCATGGTGGCAGCAGAGCCCGGTGGTGACAACTTGG

a score=16268
s chr3           152360073 424 + 160039680 TGGGGTAACTGGTAGACTCGGTGTTGGTACTATCCAAGGTT-TTATA--------GTTGCTCTAGAGAACTTTTTGATGTGTTCATGTGTGCCCCACAGTAGCTCTTCTGAGTACATTATTTTTTGTCAAAGGCTGCAGTTCATGATGAGGGC------CTCTGCAGAAATGTTTTCAAGACTATCTAATGGCGGCTCCCTTTTCCT-CCTGTGAAACTCTGTAGGAGACAAAGCATTATCTAACTGTGAACCTCACCACTCTTCGAGTATGGTGTTATGCTTGCAGCAAAGAAGTATTTTTGGATAGAAAATTAGGAACTCCTCCTTCATTACCTCATGTAAGACAGCCTCAACAAACACAAGAAAACAGTGTCCAGGTAAT----ATCATTTAGGTCATAAATGTTCAGAAGATAATTTCAGAGTTTGTT-ATGTGGTTGGGA
s HiC_scaffold_1 139126112 427 + 233722169 tagagTAACTTTTAGAGCAGGCTTAGACATTATATATGTTCATTATATTTTAACTGTctttctaaagaaatatttt---tgttgat-------CTAGATTAATTCTT-TGATTATATTATTAA--ACCAAAGCTAGtagtttttgt---gggtttttttctttcaaaaagtaTTTTCAAGTATATCTAATTTTGATTCGTTTCTCTTTCCTGTGAAACT--ACAGGATACAAAGCATTATCTAACTGTGAATCTTACTACTCTTCGAGTGTGGTGTTATGCTTGCAGCAAAGAAGTATTTTTGGACAGAAAATTAGGAACTCAGACTTCATTGCCTCATGTAAGACAACCTCAGCAAATACAAGAAAACAGTGTCCAGGTAATCAAAATTCTTAAGATATCAAGTATTTAGGTAATGCTTTCAGAATTTATTCATGCAAttgaaa

a score=12013
s chr3           152361811 426 + 160039680 TGTGGTGTAAATGTTATGTAAGTTAAAATTAAAGTGTGTTTTGATAGCATAAGGATTTATTCGAGTTTGTTTTCTTTTTATTATTAAGGATTTTAAAATTCCCAGTAATCCAGCATTGAAAACCCCCATGGTTGCTGTGTCTGAAGATCTGGATATAGAAGTGGAAGAGGAAGACGAGCTGAAGGCTAGAGGTGGG----CTCTTCTGT-CAGTGCTCCTCTCTGCGGCCCTGCCCATTTGACTAGGAAGCTGCATAATGAG---------TAGTTCAAAACAGATGAGAGATGATAATTA-AGGACAGAGCCCACAGACGTGATCTTGTAGACCAGCGTTTGCAGTAATTGCAAACTT--GATTTGTCTGGTGTCACTTTGTCACAGCTGGACTCTCCCTTGTCTTCTGG-----GAGCCTTTAGCCGTTGACCTATTTTTGGGTTC
s HiC_scaffold_1 139128492 425 + 233722169 TATAGTGTAGATGTTATATaagtttaaa---------gtttt-------taaaaatttactt-atcaTATGCTTTTTTTTATATTAAGGATTTTAAAATACCTAATAATACAACATTGAAAACTCCCTTGGTTGCTGTATTTGATGACCTGGATATAGAAGTGGAAGAGGAAGATGAACTTAAGGCAAGAGGTAAAATATTTCTCCTGTGTAACATTCCTCTGTTTGGTACTGTGCATTTCTTCAGAAAACCGTGTCATGTGAAAATTTCCCAAtctagaaatgaaaaggaatggAGATAATAACAAAGAACTCAGAAATCTGACCCAGTTTAGTTGTATTTTCAGATGAAATAAACTTACAGTTTCTCTGGGGTCACTGTATCAAAGCTGGGTCCTA------ATTTTAGCAACCGAGCCTTCAGGTGTTTTGCTAAATTTGACTTC

a score=8121
s chr3           152363894 215 + 160039680 TTTGAAA---TTGTTCTTAATAAACAC-CAAACAAATTGAGTCATTCATGTTTTGCTGAATGGTGACTTAATATTTCTTTTTCACAGGCCTGACAGGTTTGAAAAACATTGGAAATACTTGTTATATGAACGCGGCGCTGCAGGCTCTTTCTAACTGGTAAGTAGTGAGACCAATACGGGTTTTCTTTCTTTTCTTCTCCCCACCCTCTCTCTCTctct
s HiC_scaffold_1 139130863 210 + 233722169 TTTGAAACCGTAGTACTTAACAAACTCTCAGAATAATTGAGTCATGTTTGTATTA---AATGATGACCTG---TTTTTTCGTGGTAGGTCTTACAGGCTTGAAAAATATTGGAAATACTTGTTATATGAATGCAGCTTTACAGGCTCTTTCTAATTGGTAagtaaagaaattaattt---tttattttattttattttatttatttttttggtcttttt

a score=4078
s chr3           152363971 81 + 160039680 TCACAGGCCTGACAGGTTTGAAAAACATTGGAAATACTTGTTATATGAACGCGGCGCTGCAGGCTCTTTCTAACTGGTAAG
s HiC_scaffold_1 190806385 81 + 233722169 TCCCAGGTCTCACGGGCATGAAGAACCTAGGCAACTCCTGCTACATGAATGCCGCACTGCAGGCGTTGTCTAACTGGTAGG

a score=16453
s chr3           152366050  827 + 160039680 ATTTGTTAAACTTATTAGTGATAGAAAGGAGTGACTGTCAGATCGTAAAGGG----GCAAAGACCTAACGGAGAGGTTGACGTGTGCTGTCAATCATTGTG-CAACTGGAAAGCAATGAGAATTCAGCCTTGATCCCACTCTGACATTGCTCTCTTTTTTTAAATTAGCCCACCTTTGACACAGTTCTTTCTTGATTGTGGAGGACTGGCTAGAACAGATAAGAAACCAGCAATTTGTAAAAGTTATCTCAAACTAATGACCGAGTTGTGGCACAAGAGCAGGTATGTACTTAATATAGTTG----TGTTTAAAAATAC-------ATATTATGAGTATGGAAAGAAAG--------TAGAACTGTTTAGAGGGTGA----AACAAATGTGGAA--------------AGGGTAT-TTGCGTTAGGTCACTGCACTGCAATGCAGATGCGGGGGCTGAGGCCATTGCCAGTGTCAG-----CTGGCTGCATGGAGACTGCGGACGCCTGTTCCTGAGATGCAGTGAGCAGAGCCTTCCC---------AGACTAGGA-GAGGAGGCCTACCAG---------CTGCCTGGGCCC--------TGTGGCTTAGTGGAGTGGTAATTATTTG-CATATTAGGTTAGTTTTGCTTTAAAACTGTTTATGAAGTTACATTT---AAAAAAAATATTATGCAGCATGAG--------------------------AGTAATAAAATTCT-------------------------------------------------------------------------------------------TTAAAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACTACAAAAATATCTGTTTAAAACTG-TTTCTTTTTCAGGCCAGGATCTGTTGTGCCGGCTAATCTGTTCCAAGGAATTAAAACTGTAAATCCAACTTTTCGAGGTTATTCTCAGCAGGTCAG-------------------TTATTCCTATAAACTTTAAAttttttgttttttgttttttgtttttttttttg
s HiC_scaffold_1 139132973 1203 + 233722169 ATATGTTGAGCTTATTAAggatgtgaaaaaataaatatgaagctGTGAAGAGAGCAGCAAAAGACCAGCTGTAGGGATG-CATGTGCTGGCAGTTGGTGGAATGACTAAAAGTGAATGAGTTTTAAGCTTTGATTtcactgtctttttg------ttttctaaattagcCCTCCGTTGACACAGTTTTTTCTGGATTGTGGAGGATTAGCCAGAACAGATAAGAAACCAGCAATTTGTAAAAGTTATCTCAAACTTATGACAGAATTGTGGCATAAAAGCAGGTATGTACTTCAtatatttgcctttttttaaaattactcaatGAATAATATAAGTATGAAAGGGTTGCAGCCTTATAGAGCTGGAAAAAGTGGGAGAGGGACAGATAAGGAGGCTCAGTTAAATATGGGGTGTGCTGCATTTGG-AACGATGCTGATATGAAGAAGTTGGAGGAGGGCTTAGTG-----GTCAGAAGTTCTAACCTACTAAAGTCCCTGTGCTGATGCTGCTGAGTTTCTGCAGGAGCAGCTTTCTCACAAGGTGAAAACTAGGCTGTGGGTGCCTTCATGAGTGTCTTCCTGCTTGTGTTCATTTATTGTAAAACTTATTAGGCTGGCAATTGTTTGCCATAATATGTCAATTTCCTTTTAGAACTGTTCAGACAGTTGTATTTTTGAAAAACCATATAGTGGGGCATGATTATTGAAAGGAGAGCAATAATGCATCAGTGATAAGGTTTTATGAGCCCCTGAAATGTATTAGTAGGGAATTTGGAATGAGTCTGTGAAACACAAACACTTTTCAGTTTACCACTTTCAACtgcttttaagattaaaaaattagGGTAACCCACTCAGGATCCCGTCTATCTCTCtctattctgggtttttttttttttttttttttggcaccaaggatcgaactgatgaccttgtgcttgccaggccggtgcttatgccactgagctaaatccccagccctcaataaatatattctgctctttaaaaaaaaaaaaaaattataaagatttgctttaaaaaatgttttcttcctcAGGCCAGGGTCTGTTGTACCTACTAATCTGTTTCAAGGAATTAAAACTGTAAATCCAACGTTTCGAGGATATTCTCAGCAGGTCAGTTTATTGCTTTTTTACCCATTATTTTAATAATCCTGAATAAATTTGGAAAATGCtattagtttttttatttg

a score=5110
s chr3           152366198 131 + 160039680 CTTTTTTTAAATTAGCCCACCTTTGACACAGTTCTTTCTTGATTGTGGAGGACTGGCTAGAACAGATAAGAAACCAGCAATTTGTAAAAGTTATCTCAAACTAATGACCGAGTTGTGGCACAAGAGCAGGT
s HiC_scaffold_1 190806913 131 + 233722169 CTTCCTCCCACCCAGCCCCCCACTGACCCAGTTCTTCCTGGAGTGTGGCGGCCTGGTGCGCACAGACAAGAAGCCAGCCCTGTGCAAAAGCTACCAGAAATTGGTCTCGGAGGTCTGGCACAAGAAGCGGT

a score=27380
s chr3           152368131 603 + 160039680 GTACCTATTTAGTGTGGTACCATACACAGCTGATTCA------TTCCTGCCTCTTA----GGTTCCCTCGGGCATTTGCTGTACACTGGTAATGTGGTTTTGTTGGTGTGCTAGGATGCCCAGGAATTCCTTCGCTGTCTAATGGACCTGCTTCATGAGGAGCTGAAGGAGCAGGTCATGGAAATGGAGGAAGAGCCTCAAACACTAACTTCTGAGGAGACGGTGGAGGAAGAGAAGAGCCAGTCAGATGTGGATTTTCAGTCGTGCGAGTCTTGTAGCAGCAGCGAGAAAGCAGAAAATGAGAGTGGCTCCAAAGGCTTTCCTGAGGACAGCAATGAGACCACCATGCTCATCCAGGACGAGGATGAC---CTGGAGATGGCCAAAGACTGGCAGAAAGAGAAGGTGTGCAATAAGATCAACAAGGCAAATGCCGATGTAGAACTGGACAAAGACAGGGACACAGTGTGTGAAACAGTTGACCTAAACAGCCAGGAGACCGTCAAAGTGCAGATACACGGCAGAGCCTCAGGTAACGATTAGTA-ATCGGACTGTGCAATGCTAGAGT-GTCGTGTGCAGAC-------------TTAACGGTCACTTTTGGAA----CAactcatccacttat
s HiC_scaffold_1 139135894 634 + 233722169 GTATTTCCTCAGCATAGTGCATTACATTAGTGAATCAGCACATTTTGTGTATTTTCCCATAGTTCCTATGTTCGTATATAACAAAGTGGTAACATTATGTTATTGATATATTAGGATGCTCAAGAATTCCTTCGGTGTTTAATGGATCTCCTCCACGAAGAACTGAAAGAGCAGGTCATGGAAGTAGAGGAGGATCATCAAACCATAACTTCTGAGGAGAccatagaagatgacaagagccAGTCAGATGTAGATTTCCAGTCCTGTGATTCTTGCAGCAGCAGTGataaagcagaaagtgaaaatgGCCCCAGAGGCTTTCCTGAAGATAATAATGAAACGACAATGTTAATTCAGGATGAGGAGAACAATTCCGAAATATCAAAAGACTGGCAAAAAGAGAAGATGTGTAGTAAGATGAATAAAGTGAATTCTGAAGGAGATTTAGATAAAGATAGAGACTCTGTATCTGAAACAGTAGACTTGAACAACCAGGAAACTGTCAAAGTGCAGATACACGGCAGAGCTTCAGGTGACCATCTGCGCATTGGATCAT-CAAAATGAGAGTAGTTGTTTGTAGATAATGAGTGCTTAACTAATTGTTATATTTGGAATTTCCAATTAATAGACTTGT

a score=4665
s chr3           152368226 187 + 160039680 GTGTGCT---AGGATGCCCAGGAATTCCTTCGCTGTCTAATGGACCTGCTTCATGAGGAGCTGAAGGAGCAGGTCATGGAAATGGAGGAAGAGC----------------CTCAAACACTAAC--TTCTGAGGAGACGGTGGAGGAAGAGAAGAGCCAGTCAGATGTGGAT---TTTCAGTCGTGCGAGTCTTGTAGCA---GCAGCGAGAAAG
s HiC_scaffold_1 190809761 214 + 233722169 GTGTGCCCGCAGGACACCCAGGAGTTCCTGCGCTGCCTCATGGACCAGCTGCACGAGGAGCTCAAGGAGCCGGGGACAGCGGCCACGGCAGCGCTGACCGAGGCCCGGGACTCGGACTCCAGCGACACGGACGAGAAGCGGGAGGGCGACTGCAGCCCCTCGGAGGAGGACGAGTTCCTGTCCTGCGACTCCAGCAGCGACCGCAGTGAGGGGG

a score=12296
s chr3           152370172 270 + 160039680 AATCTCTATGTTAATTAACATTAATGAGTATGGGGACTATAACTACTTAGTAGTTTCATTTATAATTTTAATTGAAGGTAACAGTAAACATTTAAATT-TTACAGAATCTATCACTGATGTCCATCTGAATGACCTAGCTACGTCACAGATCCTTCCTTCAAATGAAAGTGTTAGTCCACGGTTATCAGCAAGCCCTCCTAAGCTAGGCAGTCTGTGGCCAGGACTGTCGCCTCCACACAAGAAAGGTAAACGGTCCCGTAACTCGGGTCC
s HiC_scaffold_1 139139108 246 + 233722169 AGCCTTTAAATTAATGAGCATTATTGGACATGTGGA-------------ATAGTTTTACT----------ATTTAAGGTAACAATGcaaattttaattattacagATTATATCACTGATGTCCATTTGAATGAACTGTCTACACCACAGATCCTTCCATCAAATGAGGGTATTAATCCACGTTTATCAACAAGCCCTCCTAAATCAGGCAATTTATGGCCGGGATTGGCACCCCCACATAAGAAAGGTAA--GTTTCCTTTACTCAGATTC

a score=18826
s chr3           152373338 716 + 160039680 AAAGGAACTAACTTGATTCTTT--GGAATGTTCT------GTCTCTCAATCCTAGCTCAGTCTACATCTGCAAAGAGGAAAAAGCAGCATAAGAAATACAGAAGTGTCATCTCCGACATATTCGATGGAACAGTCATTAGCTCGGTACAGTGTCTGACGTGCGATAGGGTGAGTATG-GGGTGCCACAGCACAGGACGCTTCTGTCAGATGTTATTTTTAAAAACCTGGA----GATAGGAAGAATTAAATAGCT---TATTGCTATTGTGGACCACGCATGCATTTCT---TGTGTGTCAGTTATACATCAAGTTTCCATGTAGAGTAAAA------GTGCCACCCACATCCTTTGTGAAGG------------------------ACCATGGGCT---------------------CTTTGTCTGTTTTGGTTACATGTAAAGATGAGAAGTTGCTTGGCAACAAGAAATTGTTAACA-GTGCTTATTCTCCCAAGGCTGATGAAATTAGGTATGCCCAGAAACTCTTGTGATCACAAGCAAAAGGCAGATAGTGT-TTTCTTCTATTTGCCTCTG-CAGGTAGCTTGTAAATGATAGATGCTCCAATAATAATGCCAAATTCATAAA---TAAGGTCTTATCTCAAAACATAAATTATCATGAGGATTTGACTAACACCC----AATCCTTCAGGATTTCTTAATTTTTTTTGAG---------------------------------AACTAATGTCTCAGAAAT-----------GAGAGAGATCAACTTTCAATTATTGTATTATAATGTTAAGTC---AAATGTTAAGGACAGTTA
s HiC_scaffold_1 139140442 831 + 233722169 AATGGAActgttttgatctttttaaaaatgttttactattGTTTTTCAATCTTAGCCCAGTCTGCatctccaaagagaaaaaaacagcacAAGAAATATAGAAGTGTTATTTCAGACATATTTGATGGAACAATCATTAGTTCGGTACAGTGTCTCACTTGTGATAGGGTGAGTATGAGGGAGTTACAATACATAAAATTTCTatcaaatattcttt---aaaatctgaaaaatggtATGAAAAGTTTAATTCCTTCCTATTGCTACTGTTGATCACACATACTTTCCTAAGTTTGAATCAG-TATAAATTGACTTTAGGAGCAGAATTCACTTTTTTGTATTAGCAACATTCTTTTCAAAGGTTGATCTTGACCCATCCTTGGACAAACATAAATTATCAGGACAAATTACTTGCTGCTTCCTGTATTTTGATTACAAATAAAGGTGAGAAGTTGCTCAGCAACCAG-AATTGTTAACACACACATAGTCTCACAAGGCCGATGAA-----GTATGCTAGAAAACTAGC-TGTTCACAGGCACAAGGCAGTAAATGTATcttttacatttggttttatttaatgGCTTGTACATATTTGTCATGCTAAGGTTAGGGCTCAGATGATAAAGGTCAGACTTGTAGGCAAAAACAAGgacataaatgaattttttaataacattttaaaaatccctca-TATTTCctaacttttcttaaaattacaGTTTAACTGTAGTACAGTAATGAATATaattaatgaatataaaatgACATGTCAAAGACAAAACTAAATTTTCCATTATTATGTTATACTCTTAAATCTGAAAACATTCAGTAAGGTCA

a score=30314
s chr3           152374511 598 + 160039680 GTTTATATTTGCTTATTATAATAATTTGCTTTCATCTTTGGAA---GAAATCTAACCCTGTAAATAACTGTACTGGATTCTTTCCATCCTGTT-----AAAACCAAACACCTGCAGGTGTCTATAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACT---ATAGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCATGGAGTATGTGAAGAGGTGCGTGTTTACTTTCTCTGCTTGGTTTCATTGATGT-TGATGCTGCTGCTTCTGCTGTACTAGCAGAACACTGCCTTTTTCTT-CTGTCAATGATGTTTCAGGTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTTACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAGGTAAGGAGC--------TTTGC-------TGGCTTTTGTAGGTGGGTCTGGCGCTCCATGTTTGGTCAGTGAGACAGTGCTGTGTGATAC-GTCACGGTGGAGGCAT-CTTCAGTGGCAGCTGAAATAGCATTAGGAAAGT
s HiC_scaffold_1 139142185 615 + 233722169 GTTTGT-TTTGCTTATTGTAAC---TTGCTTTGATCTTTCGTGTCCACCATCTAACCTTATAAATATCTGTGCTGGattattttcatctcatttttaaaaaacaaaacaattttaggTATCTGTAACCCTCGAGACCTTTCAAGATCTATCCTTGCCAATTCCTGGCAAGGAAGATCTTGCTAAGCTGCATTCGTCAAGTCATCCAACTTCTATAGTCAAAGCGGGATCGTGTGGCGAAGCGTATGCTCCACAAGGCTGGATAGCTTTTTTCATGGAATACGTAAAGAGGTacgtatttattttcttt------tttgattgattCCTTAAACTGCTATTTCTGctatactagcagaacatttcctttttctttctgtcaataaTGTTTCAGGTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTTGTAACTTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTAAAAGGTAAGAATCATAATCTTTTTGTTCCTGAATTACTGTAGTAGGTGATTCTAAAATAGAATTTTAGGGCAGTTACATAGTGTTTGTTTATGCTGGCATAGT---GCCATACTACTGTGGAAGCAGTCACATCATAAGAaaaat

a score=7763
s chr3           152374612 183 + 160039680 CCTGCAGGTGTCTATAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTAT---AGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCATGGAGTATGTGAAGAGGTGCGT
s HiC_scaffold_1 190810688 186 + 233722169 CCCATAGGTGTCCACCACAGTGGAGACCTTCCAGGACCTGTCGCTGCCCATTCCTGGCAAGGAGGACCTGGCCAAGCTGCACTCGGCCATCTACCAGAACGTGCCGGCCAAGCCGGGCACCTGTGGGGACAGCTACGTGGCCCAGGGCTGGCTGGCCTTCATCGTGGAGTACATCCGGCGGTGCGT

a score=5426
s chr3           152374888 103 + 160039680 AGGTTTGTTGTCTCATGTGTCCCTAGCTGGTTTTGGGGTCCAGTAGTTACCTTGCAAGATTGTCTTGCTGCCTTCTTCGCCAGAGATGAACTTAAAGGTAAGG
s HiC_scaffold_1 190811131 103 + 233722169 AGGTTCGTGATCTCCTGCACCCCCAGCTGGTTTTGGGGGCCCGTGGTCACCCTGGAGGACTGCCTGGCTGCCTTTTTTGCTGCTGACGAGCTGAAGGgtgagg

a score=8245
s chr3           152378602 298 + 160039680 TTTTTTAATCAAAGTATTGTGTAGTGACTTAACTTT----TAATTAGTGATATGTTGGTATACGTTAATTTTTTATACTAAGAGCTATTTTATTGTTTGATTATTTAGTGTATAAATATATAATATAACTCAGGAATA----TTGTTATTCTGAT-TCTTTCTTGACATTTTCTGAAAGATATTTTTGTGATCCATTTAAATATAATAAGTGTTTTGTAGATTTTTTTAGCTTTTCTTTTTTATCCTTAGGTTGAGGAATGGAGTAAAGTTTTGTAAAGTACAGAAGTTTCCTGAGGTAT-GACTTCA
s HiC_scaffold_1 139145098 269 + 233722169 ttttttcatcAAAGAATTGCATGACTCCTTAAATTTGTACTTACTACTGGTACcttgtt-ta-gtttgtttttcaGAATAAGGGGC-----------------TCCAGTGAATAACTATGTAATACAATTCAGTAGTAAGGATCTCTAGTCTGATACCTTTCACTGcgtttttaaaaagag--tattacgatatatttaaatacac--------------attctctt----ttttcttttcacctttaGGTTGAGGAATGGAGTGAAGTTTTGTAAAGTACAAAAGTTTCCTGAGGTACAgacttta

a score=8694
s chr3           152379433 189 + 160039680 AGATTTTGTGTATCCACCTTAAAAGATTTCGACATGAACTGATGTTTTCCACCAAAATTAGCACCCATGTTTCCTTCCCCCTGGAAGGCCTCGATCTTCAGCCATTTCTTGCAAAGGACAGCCCAGCTCAGATTGTGACATATGATCTCCTGTCAGTCATCTGTCACCATGGGACTGCAAGTAGTGAGT
s HiC_scaffold_1 190813449 189 + 233722169 AGATCCTGTGCATCCACCTGAAGCGCTTCCGGCACGAGCTGACCTACTCCTTCAAGGTCAGCAGCCACGTGTCCTTCCCGCTCGAGGGCCTCGACCTGCGCCCCTTCCTGGCCAAAGAGTGCACCTCCCAGGTCACCACCTACGACCTCCTGTCCATCATCTGCCACCACGGCACGGCAGGCAGTGAGT

a score=7052
s chr3           152380471 178 + 160039680 TCTGACACGTAGCACCGTAACACGCTTTTTCCTGCCTT--ACAGGTGGGCACTACATTGCCTACTGCCGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCACTGAAGTTTCAGAGTCCACTGTACAGAATGCCGAGGCCTACGTCCTTTTCTACAGGT-GACGGGG
s HiC_scaffold_1 190813666 180 + 233722169 TCTGCCCCCCTGCACCCCATGAC-CCTTCTGTTGCCTTTGCCAGGCGGCCACTACATTGCCTACTGCCAGAATGTCATCAATGGCCAGTGGTACGAGTTTGACGACCAATATGTCACCGAGGTGCACGAGACGGTGGTGCAGCACGCGGAGGCCTACGTGCTCTTCTACAGGTGGGCGGGG

a score=10402
s chr3           152380497 337 + 160039680 TTTTCCTGCCTT-----ACAGGTGGGCACTACATTGCCTACTGCCGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCACTGAAGTTTCAGAGTCCACTGTACAGAATGCCGAGGCCTACGTCCTTTTCTACAGGTGA----------------CGGGGAA------CTGTCATGACCGTGGGAAGACTGTCTTCTTAAGG--ATTTGTG-----CTTCTGAGACTTT--CGGGGCTTATGGGTGAAGATTAGAAGTGCTGTGCACGCTCATGAGTAAGAGAGAG---AAGCTGTTTACAGAATGGTAC---TTTGTTCAGAAAATAG-------GACTTCATAGAGAAGCAAAGGGACATAGTGTGTTTTA
s HiC_scaffold_1 139146746 386 + 233722169 TTTACCTTCCTTTGTACATAGGTGGACACTATATAGCCTAttgcagaaataatttaaataagcTGTGGTATGAATTTGATGATCAGAGTGTCACTGAAGTTTCAGAATCTACAGTTCAAAATGCAGAAGCTTACGTTCTTTTCTATAGgtaatctcaatgctgtcttgtGGGTAAGCTAACTTTCCATACCGGAGGGACAGCTTACCCTTTGGGGTTGTTAGTGAGTGACTGCTGACACTTCAGCTGGGCTGCTGAGTAAAGAGGAGGAATTGTTTACCCTCTTTAGAGTAAAATATAGTTAAGATTGTCTAGagaattaaatttgtttttctagaaagtaaaaatgttaaattgTTTAAGAGAAAGaggattgtattttgtttta

a score=30728
s chr3           152381285 2007 + 160039680 AGGATTAGTTTTTACTTAAAAAGAAAAAAAAGTAGACAAAGTTGGAATTAATTACCACATTTCTTCCCTAAAATATTCAATAATAAATTAAGTATGCTATAAAAATCTTTGATACTTTTCAGTATTTTA----AGAAAATGCTAAATACTAGAACAGGAACCAAGAATGCAGCGTAGTGACTTGATCTTCCTGATATCGGATGCCGACATTGTACAGTAGTTATGTGGTACTCACGGGT-AGGATCCAGCGGGACTCCTAGGG-----TAATGCATAATGGTTGAGCAGAAGGACAGAGAGT--TTCTTTTGGAATTCCTTAGGGCTGATAAGGTCCACAGTTACAGTATGT--GATAAAACGAATAATGAAGAGAAGACTCATGCTGTTAGTTTATTGTAATAAAATGTGCATTAAAG-------------TTAATGAAGCGTTGTCCTCAA-TAGGAAGAGCAGTGAAGAGGCACAAAAGGAGAGGCGGAGGATATCAAATTTGTTGAACATCATGGAACCTAGCCTCCTTCAGTTCTACATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATCCATGGAGGTAAGAAATACTGTTAGGTAAAATAGTGATACTAAGTTGCTGTTTAATTTGCAATTAGGAAAGAATCAAGAG-TCTCCTCTCCTGATTATTGTCCAT--CCCCATCTA-----GAGCTGAGTGTGTTTAATTCCTTATGATTTTAGAAATT---------------------GGCCTTGTGTGAAACC---------------------------CAGTTCTGGAGCTAAAGAATACCAAAGA--CTATTTCAGTGTCGGGAGAGC-ATTGATTTTACGTTAG--TCAGTCACATGGATGGCTAATTACAGTTGGGTGAGCTTTCTACATACACTTTCCTTGGTGAGAGCCATTCCTGTG-TGCTGGGTTTAGCTGACATCTTTATC-----TGTAGTTCCTTC------ATGAAGAGCTGAC---TTTTAAAAGTATGGAAGCATATTTAGGATTTGTGAACTGTGCCTCA----------CACTTCACTGTCTGTC----------------CTGGAGTAATAAGTAGTCTTGTGTGGGCTTGTGTTTGGCTGTCCTTATGGTTGGTGA-----CTTGCTAGTGTTAATTATG---------TAGTAAAGCTACTGGGCCTGGAGATACCCTGTATTGTATAT---------------------AGAAACCTAACGTTA-----TATACTTCTG-AATATTCTGAGCGATCAGAGATTGATGGAATGGTTAGTTTGTATAAGATGCTAGATTCAAACCCTAGTGCTACCAAATAAACACACAAATAAAAATACTGGATGTGTACTTCAAAACGTATGCTCATACATTTA----GGAAACACAGTCACTAAAAATTCTTTTCACTTACTTTTTTTTTTTTTTTGAGAGATTTAAGCACATTGATTGAAAGACAGATATGATTGTATGTATAATTctgtaaccc--cagtgtttgagggcctgaggtaggaaaactgctatgagttggaggc-cagcct-----aaactacggagtaagacccctgtctcCGCAGGACTGTGGGGAGGAGCGGGGAGGGTGTGTGGAGGATTGGCCATTTACCATTAAAAATGACTTTATGTGTGAGAGAATACTTGCCTATTTTGAGTAAGCTCTTTAATTTTAAGCACCGCCTTTGAAAGTCATGTAAATATTTTTTAGGTATTCCTCCACGAAAAGCGAGTTATATTGAAGACTTAGTTTTGATGCTGCCTCAGAACATTTGGGATAACCTCTATAGCAGGTCTGTTTTTTAAATCCAaaatcctaaaacaaaataaaaaatcataaaataaatcataaaacaaaataaaaaatcataaaacaaatTGAAAGTAGTTACAGAAGTGTTGAATTATGTCATAAATACCCAGTGTGTTATTTGATA---------------TGTATAAAGGATATTTTTTTCCATAATTTATTCATTCTAAAGTATGGGTAGGGAGATTTTTAGTCAGTGGGG-CTTAGTCTAAATAGTGGGAATTT-----------TTATGATTATCTGT-----AGGAAATACTGTGGTATATAATTTTATGTACCTTATTTAAATGATGT
s HiC_scaffold_1 139147134 1990 + 233722169 aagattggtttt--------aatataaaaaagcaTGCA--GTAACAATTAAGTACTAAATT----CCCTAAAATAGCTAATAAAAGAAATAGTA--CTGTAAAAATGTTTCGAGTTTTTCCATATCTTAGGAAAGAAAACATTAGCTATTGATAGAGGAACACAGATTTAAGTAT-TTAGCTTGACCTTCTTAAAAACATTTGAATACGCAGTACA-TAG---------ACACACTAGTTAGGACACTGTGTTGCTCCTAGGGGTGAATAACACAT-----TTGAGAGGTGATACAACATATATTCCTCTTGAAATTATGAAGGCTTGAAAAGGCACACAGTATTAGTATGTATGCTAAGTCTAATGAGGAAGAAGAAGATTGACCTACTGGTCTaatgtagtaaaaaaaaatttaaaaaaacacgcAGAATTTAATGAATCATTGTCCTTAAACAGGAAGAGCAGTGAGGAGGCACAAAAAGAAAGGCGGAGGATATCAAATTTGTTGAACATAATGGAACCAAGTCTACTTCAGTTTTACATTTCTCGACAGTGGCTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGACTTTCTCTGTATTCATGGAGGTAAGAAATCCTGTCActcaaagtagagaaaaagatTTGCTGTTACTttgtaaaagaggaaagatttaggAGTTTTCCTCTTCCATTTGTTCTCCATTGCCCCATCTGCTGTCCAACTGAGTGAAATTAATTGTGTATGGTTTCAGAAATTCACCATGTCTTTCTAAATATGGGTATTGTGTAGCATCTCTATTGAGTGTATGTTTATTGAGTATCTGTGTTAGAGCATAAGGAGACCAGAGATGTTATTTC--TGTTGGCAGAACTCTTAATTTCATAGCAAACTCAGATATATAAACAATTAATTACAAGACAGTGAACGCTCTGTTCAAAGAATTCTT-ATCTGAGTCATTCTTTTGCTACTGATTTCAACTACTTCTTATATCTAGTTTGTACTGCTCTCATCTAAATAAATAGGGGGCTCTTTTCCTAAGTATGGAACTGTATTTGAGATTTAACACAAAAGCTTCAATTTGTATATTCTTATACTGGCTATCTtaacactctggaaggctgaggcagaaag--attcagTTTGAACCCAGACTGAACAGTTGAGTGAATTAGTGAAACCTCatgtcaaaataaacaataaagatGGGCCAGGAATGCAGCTTGGtatgaag--gccctgtgttcaatctctactattgtagggaaaaaaaaaaagcctaattTTGACTTTTATGCCTCTGTAATGTGCTGTGCTAGT----------------GTTTGTTTCTATAATA---------AAGACCTTTGTAT---------GATGCTTTGATGAAGTTTTATGGTTGAAGTCTCAA----TATTCTCATACATGTGTGGTGAAACCACA-----------------------------------------AGGGATGGGAATATCCTG----------------TATTGTATATAGAaatctaaatcttaaaaatatttctgggccttgggatgtaactcagtggtgaaGTGGATGCTTAGTTtgtataaggccctgggtttaaaccCTTCTCCCC-CAATTCAGTGGGATTGA-----------ATTTCAAGGTTTGTATATTTATCTTTAGGAA--ATCATA-ATTTGAAGGAAT---------TAAAGAATAAG-----------TCAGACCTGAC-------------TAAATGTTTTTCAGGTGTTCCTCCACGAAAAGCTAGTTACATTGAAGACTTGGTTCTGATGCTGCCTCAGCACATTTGGGATAACCTATATAGCAGGTGTGTT-----------------------AAAATGGAACAGTACAGTATTGG--------------GAAAAGTC--------AGTTAAACATGCCTGAAGGGAGACTACATTGTGTCACAGATTCTtcttgtgctgtgctgtgctgtgctgtgctgcttaTGTGGAACATCcccttttcattcatttattc-ttttgaacTGTGAGTAGGGACA--TGTAACTAGTGTGTCCTTAGTCTAGATAAT--TAATTCTAATATTCCTGTTCTGATTATTGGCCCACAAAGACAAGCTATGATATTTAACTTAAAgggcattatttaaaaaatgt

a score=6133
s chr3           152381712 191 + 160039680 AGGAAGAGCAGTGAAGAGGCACAAAAGGAGAGGCGGAGGATATCAAATTTGTTGAACATCATG---GAACCTAGCCTCCTTCAGTTCTACATATCTCGACAGTGGTTGAATAAATTTAAGACCTTTGCTGAACCTGGCCCTATTTCAAATAATGATTTTCTCTGTATCCATGGAGGTAAGAAATACTGTTAGGT
s HiC_scaffold_1 190814021 191 + 233722169 AGGAAGAGCAGCGAGGAGGCGGTGCGTGAGCGGCAGCAGGTGGTG---TCGCTGGCCGCCATGCGCGAGCCCAGCCTGTTGCGTTTCTACGTGTCCCGCGAGTGGCTGAACAAGTTTAACACCTTCGCTGAGCCGGGACCCATCACCAACCACAGCTTCCTGTGCGCGCACGGAGGTAAGGGGCTCCCCTGGGT

a score=11139
s chr3           152384004 287 + 160039680 AGGGTTTATTGTAACTGGGAATTTAAACATTGATCAAAGAGCTAGAAA---TAGTTTCCTAGAACATGTTTTTTTTTCCTGAAGTTGT---GACTTTG-TCCTAAA--CTTCATGCT-TAGGTATGGAGGAGGGCCTGCTGTCAACCATCTCTACATCTGCCACACCTGCCAAATTGAGTTAGAGAAGATTGAAAAACGAAGAAAAACCGAATTGGAAATTTTTATTCGGGTAAAAGAAGTAGCACTTTG-GCGCTGTGGATGACGTCAGCTGAGGATGCTGGCCTGGTG-TTAGCAGA
s HiC_scaffold_1 139150387 299 + 233722169 AAGATTTATTCTTAGTGAGAGTTCAGCCATTGACTAAGAAATTAGAAACTATAGTATTTTGTAGAACAGCAGCTTCTGTTGAGGTTGTCATGATTGTAATTCTGAGGTTTTCATGTTCTAGATATGGAGGAGGACCAGCTGTCAACCATCTGTACATTTGTCATACTTGCCAAATTGAggcagagaaaatagagaaaagaagaaaaactgaactggaaatttttattcgggtaaagaaagtaaaacttttcaaattgCAAATAATGTAGGATAAAGCTAAGGACCTGACGATTAGCAGA

a score=5696
s chr3           152389685 162 + 160039680 GCAGGAGAGGGTTGT----GAGTTCCAGACATTAGGTGCCTGACTTTTCCTCTCTGTAGCTCAACAGAGCATTTCAAGAGGAGGACTCCCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAGGTAA
s HiC_scaffold_1 190816000 166 + 233722169 GCAGGGGAGGGGCGCAGGGGAGAGACTGACCCGCCGTGCCCCGCTCCACCCCCCTGCAGCTGAACAAGGCCTTCCAGGCTGAGGAGTCCCCTGGCGTCATCTACTGCATCAGCATGCAGTGGTTCCGCGAATGGGAGGCCTTCGTCAAAAGCAAGGACAATGACAA

a score=14250
s chr3           152389700 263 + 160039680 GAGTTCCAGACATTAGGTGCCTGACTTTTC-CTCTCTGTAGCTCAACAGAGCATTTCAAGAGGAGGACTCCCCAGCTACTTTTTACTGTATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTAAAGGGTAAGGATGGAGGTAAGTGGCTAACTGAAAGCT-----TATTAGCCAGTTCTTTTGTTTATTAATTTTATGAATATt-----------------------ggatatacaccagtgaacaat--aaaagacccatgctgtcaggcaacccacattctagtTTA
s HiC_scaffold_1 139160624 283 + 233722169 GAGTTCTAAATATTAGGTaattggtttttttctctctgtagcTCAACAGAGCATTCCAAGAGGAGGACTCTCCAGCTACTTTTTATTGCATCAGCATGCAGTGGTTTAGAGAATGGGAGAGTTTTGTGAAGGGTAAAGATGGAGGTAAGTGGTTAACTGAAAAGTGAAGGTCTTtgcaaatt-ttttgtttattcatttgataaatattttttgagtatCTCTGTGTACTTAGGAT-TATACCAGTAAACAAGGAAAAAGATCTCTGATCTAAG---------ATTCTAGTCTA

a score=64237
s chr3           152391551 1930 + 160039680 ATTTGGTTA--GTTCTCCGTAATTTCAGGTATAAAGCCATGTAGTTCTTTGCTGCATTTG---GAAGTGGACATGTTAT-AATCTTTTTATCCTTTTGA-CTTAGATCCCCCAGGTCCAATCGACAACACTAAAATTGCGGTTACTAAATGTGGCAGTGTGATGCTCAAGCAAGGTAAGTTTA------------------------------------------AGACACACAGGAT---------------TGCtttgtcctgagacacggtagcatggcctctaggctgtccttgaatgcagc------ggagag-----gtttaacttgtg----attctgtcttttcttcccaactgttggtattactggtgtatacca------------------tcatgcTTT----------AATATTGAAACT--------------TTTGTTAAT--------GAGTTCT-----TATTGATTAAA-------AAAAAAATAACCAGCT-----ATTATG----------------------------------TAATTTATTTACCTAGTTCAGAAATGGTCAGGCTTACA------------GTAACAGAAAGGGTAA--AAATTTCTTA----------TTTTTAGG--AAGGTTTTAGGGTTGTTGGA---------GCTTGGAAAATGGATCTCTAGACATTTGGAAACCGTCTCCA------------------TATTGTTTTTTATAGCATACAA--------GCTGATAATCTGAAG-GTTTCAGAAT-TCTCAGTCCTCCATAGAGGATTTCT-CTGTTGGATATACTGTAAAA-----GCTATATTAAGATTCATGTTTGTAAATATCATTCTTTTTGCATACATACAATTTTAGGAGCAGACTCTGGTCAAATTTCAGAAGAAACATGGAATTTCCTGCAGTCTATATATGGTGGGGGGCCTGAAGTTATCCTCCGACCTCCAGTTGTTCATGTTGACCCTGATGTACTCCAAGCAGAGGAAAAGATTGAAGTAGAAACTCGCTCTTTGTAGTTCTGAGG--ACACAGAGCTCTAATGAGAAGTTATTCTCAC-----TTGATGCACACACATTCAA-AACATTCCGCAAAGCATGTTGATTCTCTTGATTTTCATCCTTTTTTCTCATTTATTCCTTTGTACTGGGCATTATGGAAGGGTATATTAAA--ATGTTATAT-----AAGTTGGTATATTTAATGCTAAGTAGCTTACCAGAA--TATCTTTCAGTGTACTG--TTTTGAAAGAAAAGGGACAG----------TTGGTAACTAGGT------TCTCTGACCTTTGTTCTACAGGCAGATCCAGCAAACCCTTTGTAGCACTGTAAATACTTTGGCTTC--GATAATGTTCTTATTACTCTAACCAATCATAACTGGCTAAGCTTTTTCATTTCTCCAAAAAGCTAATTTAATTGTATA-TTTTGACATGAATTTGCATAGTAATGAACCTATGTTAAATCCGAGAGTGGTGGTCAGCACATTGTTAATTTCCTAACGCTCAGGAAACATCAGGTGGGTGGGTGTTACTGCTTTTGCACTGCAGCATATAAAACTGCATATTACAATTTACAAAATGTCTTTTTTGAATGTAACG-GGATGTATTCATTTTTAGTGGAATTTGTTACCAGATATCAGTAAATTATTGCTGCTTATAATGTAAAATGTTAAACTTTAGTT-CTGTAGACCTGAATGGTATTCATTAATGTTAGTAACAAGAAAATACCCC---TTAGTTTTAGGCCACTTCT-ATTTTGAGAGCATGAAGTATGGAATGTGTCAAATGAGATTGTTGATAAAGCTGAAACCACTTGCAAAATGATTTTTTAAT--GAAATGCATAAAGTCTTTTTGAATAATAGAGTATTCACTGCTGTTTGCTTGATCATGTGATGTCAAAAGCTCAACTATATGCAACTAC--AAACATGCAGG---------TGACTGAGGGACAGCATTCATGGTGACTTTGC-----------------------------AATGTTGTTAAAACTCATTCAATAAAAATAATTCTAAAATGTATAAACTGAATGTTGAATTTATTTGATAGACTTTTTAAAAAAGGTGTAA---AGTCTGTTAGTATTAATGCCTTTCATTATATCTTATTTGAAAGCATAAGCTAGGAAGTTATTTGCTATAA-----TAACGTTTATTAAACT--GTTTCAGAATGGC
s HiC_scaffold_1 139162071 2229 + 233722169 ATTTGGTTATAGCTCTCAATTATTTCAGGCCCAAAATTACGTAGTTCTTTGGTACATTTACTTAAACAGTGCATTTTGTTaatttggctttctttttaaaCTCAGATCCTCCAGGTCCTATTGACAACACTAAAATTGCAGTCACTAAATGTGGCAACGTGCTACTCAGGCAAGGTAAGGTTGTCTAATATTAAAACTTCTGCTCACTAGTGATTTCTCACCATTAGGAACATACAACCACCAGCCATCTCAATACTTTCTTATCTAGCTCAAGAGTGTAA--Tttgggctg-----ggatgtagctcagtagtagagtgtttGTCTAGCATGTGTAATACCCTAGGTCTGGTCCTCAGCagtaggaaagaaggaaagacagaaaggaagggagggagaagttCATGCTCACCTTATGTCAAATAGTGGAACACAGCTAGTGTGTAATTTTTCAGTCTGAGGAAAAGTTTTAAGGTTGTTGATAGGAGCTAGGGAAAAAAAATGTCAGCTTTTTAAgtatgaagcaggaggatcaccgtgggTTCcaggctaccctgggctacacagggagttcaaggccaaccaggaCTACACAGTGATACTTTgtcccaaaaaataaaaccaaacttttTAAGAAAGACCATTcctgggctggggttttagctgagtggcataagtgcctgcctggcaagcacaaggtcatgaattcgatccccggtacaaaaaaaaaaaaaaaaaaaagactattccTGGCAGCTTATAATGCTACCAACTGGTAATCTACAGTGTTTCAGAAGGTCTCAGCCACCCCTGGAGAACTCATGCTGATAGGTTCATTATGAAGCTTCTGCACTTTGAATATGTAGGCTTATAAACATTGTTTTTTGTACATACGCATAATTTTAGGAGCAGATTCTGGTCAAATTTCTGAAGAAACATGGAATTTCCTACAGTCTATATATGGTGGAGGGCCTGAAGTTATCCTGCGACCTCCGGTTGTTCATGTTGATCCTGATACTCtacaaggagaagaaaaaattgaagTAGAAACTcgatctttataattttgaggCTGTAGAGAGTATTAAAGAGAAatcattttcacttcttttgacAAATATCCATGCAACAACATTCCTTAAAGcatgtttattttcttgacttttcaTCTTTTACCACATTTATTACTTCTTACTGGGCATTATGGaagaatatgttaaaatatgtaatatactaaaaGTTGGTATATTTAATGCTAAATAGCTTATCATAAAGTCTTTTTTGGtgtaatattttttgaaagagaagGGACAGTTGTGATCAATTGGTAAATCAGTAGGTTATCTTTGATCTTTGTACTACATGCAGATCCGTAATATCCTTTGTAGTCTTGTACATACTTTCACTTTCAAAAAACTTTTTCATTACCCTAACATA-CATAACTAATCAATC-TTTTCAGTTCTCCAGAAATCTAATTTAATTGTATAGTTTTGACATGGCTTAGTATAACAAGGAGCCTATTTTAAATTT-AGCATAGTAGTTAGAGAATTGTTAATTTCCTAAAGCTCAGGAAATATTA-------GTGTGTCACTTTTTTTGCACTGCAGCATATAAAATagcatattaaaatatacaaaatttc--ttttgaatGTATCATGGATGTATTTAGATTGAGTGAAATTTGTTAGCAAATATTAGTAACTTATTGCCACTTATATTGTAAAATGTTAAACTTCAATTCCTATACCCCTGAATAGTATTCATTAATGTcagtaaataaaaaagacttaaagTTAGTTTTAGGccacttttcattttgaaagcatGAAGTGTGGAATCTGTC-AATGAGATTGTTGATAAAGCTGAAGCCACttgcaaaatgattttttaatgagaaaTGCATAAAGTCTTTTTGAATAATACAGTATGCACCACTATTTGCTTGATTATGTAATGTCAAAAATTTA--TAT-TCCAAGTACAAAAACATACTGGATTACATTAAGGATGTTGAATAACATTCTTGATGGCTTTGTTTCAGTTTGGGGCAGCTGCTATCATCTAAagtgatattaaaaatagttcaat-aaaatggttttaaaacgTATAACTTGAATGTTGAATTTATTTGACACCGT-------GAGGGTGGAAAGCAGTTtgttaatatta-------ttattgtttcttgCT-----AAATATGCAAATAAGTCTTT---CATAAAGTTTTGatgtttaataaaataagtttttaattggC

a score=5453
s chr3           152395827 235 + 160039680 GCACGCAGCGGGCTGGG---CCGG-------TGAATCCTcccgcccgccggccggccgggTCGGGATCGCTGCAGCGGCCGCGGCCACCAGTAGGTGGCGCGCCGAGCGCCCGGCT-CCCAGCGTCTCAGAGCCGAGGAA-GGAGGGGACCGGAAGGAGCCGCCGCTGCTGCGGGAAGTGGAGGAGCGGGAGGCGGGGACCCACCTGGAAGCGCCGCGGCGCCGCTGTGGCGCTTCCTGCGGCGGAG
s HiC_scaffold_1 139174639 239 + 233722169 gtgcgtggcGGGGCGGGGCCCCGGGGCTCACTGAGCCTCCGCGCGCGCCAGC-----GGGAGGGGGGCGCTGCACCGGCCGCGGCCACAACCAGGCGTTGCAGTGA--GCCCGCCTGCCCGGGCCCGCCCCGCCGGGGAAGGGAGGGGACCCGAAAACCCCCCCCGTCTTTCGAAAAGTGAGGAAGGGGGAAAAGGGAAAACCCTTGAAAGCCCTG-GGCCCCCTTGGGGAGTTTTTGGGGGGGGGG

a score=16874
s chr3           152396310 1197 + 160039680 GGCTGAGGGGGCGGGGAGGCCTGCGGAgg----cgccgggcgcgcgcgcgg--------ggcTCACGTGACGGCCACGT-GACCGGAGGCCA------GGCCGGCTGAGGGCTAGCGCGGTCCTCCGTGGCGTCCGGAGGGCGGCA--------GAGGGCTGAGTTTGGCG----------------TCCCGCCTTTCCTTCTCCCCTCAGACGACTCAGAGGAGGAATCC---AGGGCGGGGAAGGCTTGCCTCTCCTCCCG---TTTGCCCGCGGCCTCCCAG-TGCGAGGACGAACCACACGTTCAAAGTCCCGAAGTAGTGATTAGCTTCCCCCACGCCGCCATGTTGGCTCCAGCGCACGCCCGCCCGCGAGATGCCAGCGGGTCGGTATCGCGAGATCTCCGGACTCTCGCGGGACCTGGTTGGCAGAGCGGTTGCGCTGGATGGCGGAGCCCCGGGTTCTCGGGGCCCTGGGACCAGTAACTCTTTTCCTGCAGGCAAGTTGTCGGGGAggggccggggcgcgcgcccgggcgccgggAGCCTTCGTGCGCGCGCCTCGCCGTCGCCTGCGGCGGTGCAGAGCGGCTGTcgc-gcgccgcgctcctcccgcccccgggcgcccgccacctgcggagac-----ctcccc---gccggccgctgcccggcgc--tcgctcgccg------gcccggaggccgctgccagcccgccccgcc--------------cgccgccgcccccTCTGCCCA--GTTACCCTCTCTGCAGACAGCT----CCACTTTCC---------------------------TGTCG--CCTGTGGCTGCAGAATCTTCCCCCAGTCTCCC--AACAGAACGCATAGCATCTCTCGTGTCCGGGCGTCATTTAGCCACCC---ACTTGTCTATTGGGAAGTTCTCCTCGTCACCCTGGCT----GCTGACAGTAACTTTTGGCAGTGTTTGGGAGGCCCCCT-----CACC--CCTGACAGTACCCGAGGTCAGAATACAATCCTTGTTC------TGTACATGCTGATAAACTCA--CGTCGGTAGGG-----------------ATTGGGGCTACCATTTTTGGTATTCTGGGGTGCCGGTTTTGTTTTGCA----GAAAATAGTAGTGGGTTTGTTTTAACGAAAAATCCCGC-------TACTTCTTAAATTT--------GAGGTCGG---------TCATAAGTGTCTTCATGAGTCAA--TCACTTTTTTCTA--CTTAGAACAGCCACTCACAAGTCAGTTTACCATAT------TTGTTTTCATTTCTTT-----GTATTCAAA-----------AGTATGG------AAGCTACACAATCGGGAAACTAGATAGATAATTCATTCATAGTT
s HiC_scaffold_1 139175222 1348 + 233722169 GGACGGGGGGGCGGGGAGGGCTCCGGGGGAGGGCAGCGGGCACGCGCTCGCTCCGCCGCGGCCCACGTGACCCACACGCCGGCCAGAGGCTCCCACGTGACCGGC--AGGGCTG----------CTAAGGGAGCTGGAGGGAGGCGCTATGTGTAATGGTTGTGCCTGCTGCAAGTTTTCGGGACATTTGCTGCTGCTGTTCTCCACCCAGAGAA----GAGGAGGCGCTCTAGAGGGCATAAAGCACTTCGTATTCTTTTTGAGTTTTACACGT----TCTCAACTCCGTTAGGGAAGCAC-TTTGTAAAGTTCCTAAGTACTGA----CTTTTCCC-TGCCTCCATGTTGCTTCCAGAGGAAGCTCGC----GAGAGGCGCTGGGCTTTGTATCGCGAGATTTCCG-ATTCTCGCGGGACCTCTTTGGCAGAGCAGTTGTCCTGGATGGCGGAGCCTTGGGTTC-CGGGCGCCTGGGACCCGCAGCTCTTTGGAC-CAGGCAAGTTGTTAGGGAGGGGCCGGGGGACGTGC------------------TGTGTCAGCGTCCCCCAATCTCC-AAGGGAGTACAGTGACCCCATTGAGGCGACGCGGAATCCCCGCCC-----TGCGGGCCACCTGACGAAGCGTGTTCTCCCCTCGGCCGGGCGCGCCCCGAGACCGTCCCTCCCCGCCCCGCGCCCCAAGTCCGCCGCGGGCCGGCGCAGCCAAGGGAGCCCGGGACGCTGTTTCTCTGACTTCCAAACATTACTATCAATTCTCGCTGCCTTGGCCATTTTCCAAAGTAGCCCAGACCTGTTAAACGTTTTGTCGCCCCTTCTCCTGCGGTACCTTTCTCCAATCGCCTAGAACGAGACGTGGTCCATCTCTTGCCTCGGGGTAGCGTTT--CCTCCCATTATTTGGCCGTTGCTAA--CGTCCCTGTCATCTGGACTTTGCTTTTACACTAACTCACGGCAGTATTTAGAGGGACCGCTGGTAGCTCCGATCTGACAATACCGGAGGTCAGAATG-AATCGTGCTTTTAATCATGTACGTGCCCATGAACTCAGTTATCAGCGGGGTTCTGATGACTGCTGTTACTGAGGTTGCCATCTTTGATGTTTAGGGATGGATGTTCTAGGTTGAATATTGACATTAACAG-GGGATCATTTTatgggaaattttaaattaaaagtatatCTCAAATTTTGCTATCAaagtttaggattttttttcataaatgaatttG-AAGTCAAATTAATTTTTCTCCAGTTTTCGAATA--TATTCACAAATGAATTTACCATATACCTTCGTGTTTTCATGTCTTTTGTCAgtgtttgaattttattctttggAATGGGGAGTTACATTGCACAAGTGATAAGATAGCTAGGTACTTCATTCACCGTT

a score=6156
s chr3           152410571 227 + 160039680 AAGCAGCTCAATTAAATTTCACTAAGCCCATTTTCTAAGTTGTCTGTCCACCTGTCTATAACAGTGACAAGCTTTCCTGGGCTCACGTTTCTGCTTTAATACCAACTGGCACTGAGACATTACACAAAGGACTTGAGCTTTCTTATCACT-AAATGAAAATTCTCTGAGAGAGGATATGGAAGGCAGTGTGTGCACTGCATGAGATGATTCATGTTCTTAGGAAGTGC
s HiC_scaffold_1 139208080 225 + 233722169 AAGCAGCCAAAATAGATAGCATGGAGTTCATTCTCTCATCT-TGTGCCCACCCACCCATTATGGTG-TAAGACTTCCTCTGTTCGCATCTCTACTTTAATACCAAGAAACAATGAGACCTTAGACAAGTTGCCTGCA-TTTCATGTCATTCAAATACAAATGCTAGTAGAGTATATCAAGAGGTAATTTTCCACATCAAGTGAAATAATGCATGTTCTTAGAAAGTGC

a score=8878
s chr3           152414578 399 + 160039680 GTTAACTACTGGAGAG-ATTTAGACTGGAATTAGGTAGAGATGGAAAAGCCAAGTACAGTTTCTATCCCTATTGAAATATGTTGATATTTGTGATACATAACCTTA----TGTAAAATTCAAAATTTGACAAAAACCAATTTGATGTTAAATGTCTAGTAGTTAC-TTTTAGGAAGTAGAAATGGCAGAAAAT-GAGATGGATTTAAGAGGGGACATTAATATTCATGATCTGGTTTGTTCATTTTC---------TTAGTATGTTTTATAAGTATG------CTTAGAAGACTAATCTTTATTCCAAAGGTGAAAAAAATGTAGGGCTTCCAGAAGCTTAAAAATTAAG-GTTGTAGTACTCTCAAGTTG-AGAATATTGCCGTC--TCTCACTGCCTGCCCAACTCTGGTATTTTACTTTTCT
s HiC_scaffold_1 139210340 404 + 233722169 GTTAGCTGTGAGGGAGGATTTAGAGTAGATTTAGGCAGAGGTGGAAAAGCCAGGTACAGTTTTTATCCCCATTAAAAT-TGTAGTCAT---TAATGTAAAGttctatttctataaaattcaaaaactggcaaaaactagTCTAGTATTGAAAGTCAAGTGTTCATAGATTAAAGAGCAGAAATGGAAGAGGATAGAGGTGAATC--AGGGTGACCAGTAA-ATCAATTATATGATATACTCATTCCTCATGTGTAACAAGTGAGTTTTTAAAGTATATGGTATTTAAAAAGTCAACCCTTtgtttttcagataaagaaac--tcGGGCCTAGGGAAATTT-----TTAAGTATTGTA-------CAAGTCATACAAGAGTGCAGTCATTTCCACTGCCTGactagcttttgtttgtttgttttct

a score=8232
s chr3           152416652  910 + 160039680 TAGCAGATATACAAAAGTACTCCACTGGTAAAATCTCT-----CTGGACTTCACAGTAGTTCTCTGAGGTAGAGGCAAATGAGATG--------TCCAGTTTTACAGATGAAGACATGAA-TGTAGGC-AAAGTGACTGCCAGTGACAGAAAATCAAACATCCATTTATTTGCTACCAAATCTGTTCGTTTtctctctgtctctctctgtctgtctctctctctctctctctctctctctctctctctctctcG-CCATA------------TTTCTGGACCTGTAGAAGGC---CTTACCTTGTGCCTTTGAACATTCCAGGGGACTGGGAGAATAGGGGTTTGTTTGTTTGTTTATGTTTTTGGTTTTTGTCATGCTTTATACCAAATAGtaattttcttattttttttttaaaaataGGAAGTAACTATGAAAGCATGCCTAGGAAAAGTACTTATATCTTTGATCATTATTTTAATGCTTTTTACAATAGAC--------------------TTTAAA-------------AATTATGTATTAA------------------------------------------------------------------------------------------------------------------------------------------AAATGAGTCTAT----TGTATGGCATTTTATTTGATTTTTTTCC-----------------------CCACCAAGCC--------------------------------------TTTAATAATACAAAA-TATTGTAGGATCTTG--CAACTCAGGTTA---------------------------------------------GTTGAGGCT--------------------------------------GGattttataatt-------------aatt-----------tttaataGTAT-TTGTG---CTTATTCCCTTGCTTTGTGACCAGAGCTGATATTTTGTAGGGAAA-ATTGCTGTAGTCTTTCTGAAGGGCTTGCATGTGTCAT--GAATCTGAGGTCCTATAATCCAATGAGCACAGTAGT-CTAGTGTTCAGTGGCAAGTAGCAGAGAAGAG-AATTCTTTGCAATGAAGATTAGTTTTCAGATTTGCTGTTGAATGCTTGAATAGCCCATGAATTTTATTAGTACAGAAAAACAACCAAAGCTTTGTAGCAAGGATCGAATAAAAT---AAGGCTT------------GTTTCTATTTTGTGCCTTTAGG
s HiC_scaffold_1 139216574 1213 + 233722169 TAACAAATGCTCTGAAGTGCCACACAGATGGGATCACTTTGTTCTGAGCTTCACAGT----TCCTGAG--AGGAACTGGGGAGGTGCCAGGGGCTCCAGTTTT-TGGATGAAGAGATAAAGTGAAGGCCAAAGTGACTTGC--TCATAGCCAGTTAAATATTGAT------GATGGAGaat--------tatatttctgtttcttcccaCCTG---------------------------CTATCTTTTTGTTGACtataaaatactattatttttaaaatctgtagaaGATATACTGAACCTGTGCTTTTGAACAGTT-AGGAAGCCAGGAAAATGTG-----------------ATGTTCTTTG-----GTCATGCTTTCTACCAAATAAACATTCAGTTCAGCTTTTT-----AGTAGCAAGTAACTATGAAAGATTGTCTAGGAAAGGTGTTTCTGTCTTTGATCA-----TTAATGCTTTTTATAACTGACTTGAatgtttctcagtttcttttaaaatcaatgcagtgcagttatttatttatttatcttttgtctttttctattggtaccggggatcgaactcacgactgcctgcttgcaaggcaggtgcttatgcctgctgagctaaatctccagccccaattttttttcatttactgaaaCTGAACAGTCAGATACTAGATGAATCTGTAGTGTATataacctttctttttaattttttccaagcttatataaaataaaaaactacaacAAGCCAGaagtggtggcatatgcctgtaatcccagctgctcagtaTGCTGAGACAGGactattgcaagttcaaggccaacttgggccaTTTAGCGAGTCCTTGCCTCCAAGTAGATAAAAAGGGCTTGCATAGGTTGAAGCTCTGCTTACTTGTGCACATGGTCTTGGGTTTGGTCTGTAGTATCTCATAATTTAGGATGTGTTTGGATTGGACTTTACAGTTTAAGAGTATACTGTGTGCCTCATAACTTTGCTGTATGAC-------GATGTTTTCTAGTGACATTTTTCTGTGGTCTTTTTGAAGGGATTTAGTGTGTGGTCCGCATCTGAGA--CTCTAATATAGTCCACCCAGGAGTACCACTGTTGTGCTGCAAATGGT-GAGAGGAGTAATTCTTGTCAGTGAAGA-TGGTTTTTAGATTTGCTGTCGAACGCTTGAATAGTTAacaaattttattagtatatgaaaATGAGCAAAGCtctatagaaaa----gaataaaataaaaaggttttcCAAATGggacttttccattttttattttttgg

a score=14982
s chr3           152419957 656 + 160039680 TTACCCACAAATC-TGTAAACAG------TACCATAGTGACCGTATTTTGATTTCCCTTCACAGATAACAAGTTGTGCTAGTACATCTGTATAAATAATT----CCTGAAGTCTCAGTGTGACATGGACAGTAACAGTGATGACAGATAAATACAGATGCTTGGGAGTGAAGTCCTAGTC-CAACACTT--CAACAGGTAAGGAAAGAGTGTGGCGCGCTCTAAGGCCGGGCG------AGGCAGAAGTAATTGGCT--GGTTT------------GTAAGAAATCTGTCCAGTGAAGCCTGTCAA-----AATACTAGTAGAACTCAGCTTTAAGTACTGGTTCTTTTGTGAAATTAGCGGTAAGAGATACTCTTAATTGGCAAATACAG-TGGGTGATGCTTTCCTTCTAAGAATGAACCC-----------TTCTGAGAAGTGTACA-----GCACTGTGGGCAGAATTTTAGTGCTGTCCCGTGTATTCACAGAGCCTCTGCCTGCTACCACGGTGGCACCACGTTCTAGAGCATGTCCTGCTTTGCTTTGGGATGGACTTCTGGGGAAGGC---AGAGAAGTTATTGGTTGGATCCGTCTG-----AGGCTGAGTTTTCAAGTCA--GCTTACTCTCTGTAGGACCCTGTTTTCCCTGTGTACCCCTTCATCATGTTAATTTAGAGCTTT--AAACAATGATGGAATTTAGGCAGGTTT
s HiC_scaffold_1 139220823 699 + 233722169 TTATCCACAGGTCCTGTAAACGGCAGCACTACCATTGTGACTGTATTGTGGTTTTCCTGCACAGATACCAAGTTGTGCTAGTGCAGCCATATAAATAATTAACACGTGAAGTCTCAATGTGACATGGATGTTAACAGCGATGACAGATAAACACAGACACTTGGGAATCAAATACTAGGCGAAACATTTTCTAcaaggtaagaaaaaaatgtagttttaatGAAGGCCAGTTGGGATCTAGTTAGAAGTAACTGACCAAAGTTTCTTTTTCAGGACTTAAAGAACACATCTGCAAGAACCTGTCTCTTCTTAATACTGGTAGAACTCAACTGTAAGTATTAGTTTTTCTGCGTACCTAACAGCCATAAATGACATTCGGTAGTGAATTCTGATGAAAGAGA--------GCAGGAATGTGCCCAACTAGAAGAGTGTTAGAAAGGGTGCATCCATGTACTATGCCCAGAGACATATTGTAATTGTGAATTTTCTCTA---CTCTGATTGACACCAC-----CATCACGCACTGTAGGATGTAATCTTTCACCATG---------TTTGTGAAAGCCCAAAGAAGAGTTGTCACTTGGAGTCTTTGGtgtaaaaagttaatttttaagtcAAGGATTACTTTTTGTGGGATCATGTTCCCACTGTGGTTTGTCTCTTCCTGTTaatgaaaagcttttaaaaaagtaGTTAACTGGGGCCAGGTTT

a score=32683
s chr3           152422489 1938 + 160039680 TTACCAGGAAGCACCAAAT-CATTACTGTGAAGATGCTGCGGCCTCTG-TGTACTTTCATAGTCAGAGCAAAT-TGGTAGCATACGGTAATCTCCTTATTTAATATCGTTTTTTATCATTTTATTTTAAAGAGAGTCGTTTAAGAGGTTCTAGTATTCTCCGAGGCTGAAGCTGAGAGTCTGAAAGCCTGAAGCTGAAACTCAATTGTAGATCATAGCTCCATCTCCTTCAGAATATAAAGAAAAGAAATAATATTTCCACAATGATAGATCTTTGGTTGTACAGGTAAGTTATTTAGTTCTGCAGTAGAGAAGACACCATTTTATTT--------------TGGTGGGAGGAGATATGTT--------------------------------------GCTTTCCATCGG------------------------------TCTTT---------CTTTAGGGAAAGGACCAAAGATTAAGTATTTTCCCATTTTTATTTCCCAACAAAGAGATAAATGAAATGAC------TGTTGGAATAATTCGAGACCAGTAAGCCTGCTTTGAAAT-GTACATATTTAAGGAGCAATATGAAATGTTTTGACTTCTCAGTTGTCTC----AGCGTATATATTCATGCAAATCTACTCTCTGTCTGCCTATATATCTATCTGTCCTGTCAAGCATCTATTGTTTCTGTCTTGATGACAAAG------GAAATCCAGTTATATATACCTATGGAATAGAATTTCCAAACTTCAAAGCAGTTACTATT---AACCTTCAATGAATTTATTTTAGTGCCTAGGGTCACAGGCATTGCTCTGCTACACT---------GGAGTGAGAATTGTGCAGGTGAAATAACTTGtctttgttaaaagagtttaaggccactctgggcagtgtagaatgttccaggctatccagggctgacgagcaaaatcctgtctcaaaaCCCACATCAGACTTGTGTGGTAAGAAATGCCTGAGC--------ACAGCCTGAGCTGTAGA-AGGGCAGGAAAGT---CAGAGTGGCAGCACGTCTCA----CTCTTCCTCATTTTTTCCTTTGGCTTTGTACCTGAAAATGCACAGGTATTGT---GACCAGTTTCCTATAAGTTGTTCACTCAATAAAAGTAAATAATATGATAAT-------------CATATTGGTGTTGgctgtgcatggt--ggtgcatgccgctcaggagaggcagagacaggcagatctctcttaagtgtgaggcctgcttagtgagttccagg--acagccagggct-----acatag----tgaggccctgtcttaaaTCCAAAATGCTTA-------------TGATGATCT-----TGTTTAGTCTCTCCTGTTTCTTTTGGTTC-TGATCCAGTTATGTG-GGTATGGTCACGGGGACTAGAGGTTTATGATCCAAA--AGAGCTAATGATGTCTTAG--------------AATTTAATAG----TTTTTATAAAAGTAGATTCAATTTTGGGGAAAGGTGGTTTAGTG------------------------------------------------------GAAATC-----------------------------------AGATAAGAGG-ATGTGT-------------------------GGCTTTAGGGGAGGTTTGGGACTCAGTGT-------------GGACAGGCTAAAGGAGTTTGGGTTGGCT-GGCCCTTTCAGTCTCTTCAGTAGTTAAGGACT---------------TAGAAAAATGGGGGAACACGGGACAAAGTGCTGT----ATCCACTGAAGAATCA--CACTCTTCTCTTT----TCTGCAAAATTCTGCGGCTCATTGGTTAGGTGGGCAACATAGGATAGATTTTGGTTTTATTACTAG-TTGGGTTTTGCCCACGTAAAGTGTTAACTCATGGTTTGATTCATGGTTTCCCTTAATTCT-AAACTATACT-----AATTTCTATTACCAAGTGTGTGT-GGCTAAGGTTTTCACCAGCTGTCTCTTATTTTAGTTTATTAGTAAGGTTGTTCCTGAGCTAGTTGGCAAATGGGTTCACTTCTAGTTCCTTAACTACTTCATATTTGACTAGAATATAATTATACAC-CCAGATCTCTTCACCAGATTCTTTAGTGACTGTATTTAGCTAGAATAAGGAAAATTACAGCTTTAGTCTGTACTACTGTGCTAAATAAACAAGCTTAGCAAAACAGTATTGA-AATTTGGTTGGAATAATGTAGACAT
s HiC_scaffold_1 139223285 2104 + 233722169 TTCCCAAGTAGCAACAAAGATGTCACTATGAAGAAATTCTATTTTCTGCTGTGCCTT-ATCATAGGAGTAAATCTATTAGCATAAGttaatttccttctttaattcttttttttattattttattttgaagaaaggaaTTTAAGAGTTTCTAGTATTCTCCATGGCTGAAGCTGAGAGTCTGAAACCCTGATGCTTAAGCTCTATTCTAGA-CATAGCTTCAACTCCTTCAGGATATAAGGAAAAGAGATAATATTTCCACAATGATAGATCTTTGGTTATACAGGTAAGTTATTTAGTTTTGCAGTAGTGAAGAcaatagtttgatttttttttttccccctagtgGGGGAAGACTTATTTTTCTGTTGCCTGTGTGTAAAATTGTATGGTCTGGCTGGCTGTTTATAGGAGTGTGGTGCTCCAGGGAATGGCCTGGGAATCTTGGAATGTGAACCTTCGGGTATGGACTAGAGATGAAGTATTTTTCTA--TTCATTCCCCAA-AAAGAG---GATGAAATGACTGAGAATGTTGGAAT--CTCTAGACCATTAAACCTATCTTGACATCCTAGGTACTT-------------CACTTCTCTTGCTCTTCTATTATCTTTTTAAGTGT---TGTATATTCagatcta---tctgtctgtctacctaCCTACCTA---------------ATTACCTC--TCTCgatgaggaaggaagaagaaatccTTTTATATCAGACAGTTCATAATAGTTTTTAGACTACAGAGAGGTGACTGTTAAGAACCTTAAGTTGAATTACATGGGT-----GGTTTCTAGTTTTCACTCTTTTACTATTAATCTTACAGAGTGGTAATTACAcagttgaaataatt-----------------------------------------------------------------------------------------------ttagaattgtaTGATAAGCATAGCCTGAATATTGTTAAACAGTTTATAttctaaacaagaaaaaaaaataaacatattggTGACATTTCCCagctgctctttcttttttttt--------tttgta--tgaatgCACACTAGTATCATCAGGACCAGTTTCCTGAAAATTGTTCCCTTAACAAAACTAAATATTATGATAGTAAGTATCAACTAGAACATTGGTATTAATGGAGGATTGCCAGGTTCTCAGTTCCCAAAATAAACA---------ACACTTTTGTTGACTGTGG--------TAG-GAGCAAAAGGTTAGAGGCAgtgttttttgaaatagttttttaagattttttttaagtagagaTTGCTAGAACAGTATTTTGTTGTGGATCTTTCCCTGTTTAGTAT----TATTCTTTTTAGTTCTTAATGAACTGATCTGCAGTGTGACCACAGGGGCTGGAAATTCATGATCTGAAGCATAATTGATAATGTTCCAGTTAGATTTGGGTAAAATCtgattgaagttttttttttttgttgctctGTTTTTGG----ATGTGTTTTTGtgtcattgtgcagttcaggctggccttgagctcgctttgtagcctaggctggttttgaactcttagtgatgcccctgcctcagcctcccgtgtgctgggattatagacatgtgccatcatgcctggctgagtTGATTCAGGTTTTAAGGGAAGT----GGATCTGTGTCAGATAAGGAGTGGGATATGGTATAGGATTTGGGGCTTACTAAGAGCAATCAGGCTCAACTTTGGTTAACTACTATTCTCAGTTATGTCTTCCAGTACGATGTAAGGTGGGAAGACCGTCTGTTTAATTCTAGTGATTGATCATGTACTCTTTTCTTTGTAGCCTAGGAAGTGCCATTGTTCGTTAGAT-GGTGGGTAATGTAGGA-AGACTTTAGTCTAATTGCTAGATTGGGTTTTGCTCATATGA-----------ATATATTAACTAATGGTTTCCCTCAGTTCTAAAACTAGAATGATTaaatttctatttccaaatggGTACAGGGCAAGGTTTTAACCATATGTCTCCTATTTCA-TTAACTACAGAGGTATTTCCTTTCATAGTTTGTAAATGAGTTTATTTCTATTTCCTTGGCAGCCCAGTATTTGGCAGGAATATAATTTTGTACTCCAAACCTTTTCATTGGGTTTTTCAGTAACTGTATTGGGCTAGAATGA-GAGAAGAATAGCTTTTGCCTGTAGTATTTTGCT-----AATAAGTGGGGCAAGACAGTGTTGACACTTCGGTTGAAGTAGTATAGACAT

a score=144898
s chr3           152424929 6404 + 160039680 [encoded data, 7040 characters]
s HiC_scaffold_1 139226464 6175 + 233722169 [encoded data, 7040 characters]

a score=35164
s chr3           152445703 1737 + 160039680 TGAGTCTCGTAGGTGCTTTGTTTCACCTTAGATATTTCTGCTGCTTCTAACTTAAGAAGACTTACTCTGCTTCTGATTGTGTAAAACATCAGAC------------ATTTATTCAATAAATTTATTGAGTGTCTACATGCTGGAAAATATGATAACTTG----TCTTAC-----AAAAAAGAAAGCAAGCAAAACAGATGTATTTTTCCATAATGGAGTTGTAGTGTTGTAGTCTATTGAGAAGCAATGTATTTG--GACATAAAGAAAACTGCT-CTGTTGAATACTTTAAGGACATAGCTGCTGCTTCTGCAGTGAATTTGCAGTGACTTTTCA--GATTACTTCTGGGA-----------GCAGTCAAGGCTTTGGG--------GTTCTTATGTATTT----ATAGGTAAAGCCAGGGATTCCAGACTCAGGACATTGTTACCCAAGAGACCCGAGTGAGAATGAGCGAGCGCGCATG-AGTGT-----CTCTGTGACAAGTAGGTAGAG-------------TTACGGGGATGAAGCTGTGT------GTCCGCCGTCGGC------GGGTAGGGAAACGA-----TGCCTCCAGCTTCTCT------CTAAGAACTGAGCATTTGCCCTTATCTTGAATGCTGGGAAAAA----TAGGTTTGTGATAGAAAGTGAGATTTCATATGTGGGCGAAGTAGATTATAGAGCAGTTGAGAACTGTGTGACCTACTACCATATCATACT-ATGCGTGCTGTCTTGTGGCGTTGGAAGCGTGTGCCTTAGGCGTTCCGTTCTCACATTAGTATAGCCAGGAAGTAGGATTTGGTGACTCCTCTCCTCTCCTTGTGTGAAATTACGGAGTTTTAGTTCTTTTTATT--AAGAAGTTTCTTAAAGCTTTGGTTGCTGAAACATCAAAATATTTCTTGTTTTCTGA----------ACTTGTTCAGGGTTCAAGAATTAGCAGCTTTAAGATGGGA-AAGAAGGCCTTGCTTTCTCTAACTAATATTTTCTGACTAGGTACTTCGTAACTCAGGAAGACCTCATTTATTCCCAGTAATATGTTTTACTAAACTCT--CAGGTAACTCTAAAAAGACTGTGTGACTTAATACATAGTAGATGATGACTTGAACTAAGTTTTTATT----GTTGTTAGTAGAAACCTTTAAGTGAGAGTCCTCTCTTTGTCTCAGTTATCAGAGACTGCTACAGACCATTGCTGTACTTGAGGCTCAGCGTTCCCAAGCAGTGCAAGACCTGGAAAGTTTAGGCAAACACCAGAGAGAAGCACTAAAAAATCCTATTGGATTTGTGGAGAAACTTCAGAAGAAGGTACAAAAAGAATGCACTTTGATACTTTTAGAGATTATGGCATATTTGGTAAT---TTAAAATAATTGTGCTTTTTAAAAATGAGTTTATGCCTTAAGAATATTTAATTCCACAACCTGCTTCAGGTTAGCCATATGACTAAGGGCAGCTTTCTCTTCCTCCCCATGTAATG-----CAGTGATATCTGCCCAAGTGAAGAGAGCT----------AAGCTTTCATTGGCTGTTTGG---CAAGAGCGGGTTTGCTTA------TTCTGTATCTGTTCCCCACCCTATTACCCTCTG-------------AGGCCTGGTACAGA------------------GGATTGGTTGGTTAT----------TAACTGCCTTTGTT---------------TGGGTTGCAT--TTGCTACTGAGTTAAATAAGTAAATGCTTATAGGTACAACACAAAAATTTATTTTAAACATATTTAAGGTTATGATAACCAAGTCTATGAAG--AGAAACTGAATTTTATTTAATTCTGTAAAAGACTTTTTTTCTTAGTGTGAAACTG-------------TTTTCTTTTGAAACTTTAATGTTTAACAGCGAA
s HiC_scaffold_1 139260475 1851 + 233722169 TGAGCCTCA-GGTTGCATTGCTTGACTT--GTTGTTTCTGCCG---------------GATTCAGTATATTTTTGACTATGTGAAATGGGAAACCCAAGTCCTTTAATTTGTTCATCAAAAGCGTCAAGCATCCGTAGGCTGGGA----------CTTGCACTTCCCACCAGCTGAGTGAAACAGTAGACAGAACAGATGTGCT----------GGGCTTGTGGGGTCCCGGGCTAGTAGCACACAGCCTATTTGAAGGTGTTCTGGAAACTGCTTCCACTG--TGCCTTCAGGACTTGACCATTTGTTTTAAGGGGAACTTG-GGTGACTTTTTCTTGActgtttttgcaaaatgcaaacaAGCATTCAGGGCTCTTGGAATACAGCGTTTCTATATGTCTGCTCACCTGTGAAATTAGACATTT--GCCACAGGGCAGTGTGAAGGGGGTGGCATGAGGGAAGATGAGTCAGTCAGCAGGTACTGTTGGTGCCGTGAGATTACAGGGTAGTGACCGGTAATCTACTTGTGAGGTTAAAACTACGTTAGCTGGACTAAAATGGGCCCTTTCGGGAAAGGAAGCAAAAGTATCTTTATAGCTTCTGTAAATGCTTCAGAATTGAGGATCTGTTTTTACCTTAAATGCTAAGGGAAAAGAGCAGGCTTG--ATAGAGAAGTGAATCTTTTACATAGG--AGGTGTATAGCAGAGCAGATGGGAACCCTGCGACCTAAGGTCTCCTCTGACTTGTGCCTGCAGA--TGTAG-GTAGGAAAAGTG--CCTAAAGTCCCTTACTCCAGCAA-AGTGTAAC--ACCATCTGGATTGGATGACCCCTCC--------TAGataaaattttgtgatttttgtttttttaattttaataatttctttaatgactTTGTTG--GGAAAGCCAAATGCTTTcctattttcctatatttcctatACTTATTCAAGGTTCAAGAACTAAAAA-TTTAAGATGGGGGaagaaggctttgctttctctaaCTGATATTTTCTAACTAGGTACTTCGTAACTCAGGAAGACCTCATTTATTCCCAGTAATATGTTTTACTAAACTCTTTCAGGTAACTTTAAAAAGACTGTGTGACTTAATA----GTAGATCATGGCTTGAGCTCAGTTTttgtttgctgttgttgctggGAGAGTATA-GTGAGATCTTTCTTGTCTCTGTAGTTATCAGAGACTGCTGCAGACGATTGCTGTCCTTGAGGCTCAGCGCTCCCAAGCCGTCCAGGACCTTGAAAGCTTGGGCAAACACCAGAGAGAAGCACTAAAAAACCCCATCGGATTTGTGGAGAAACTCCAGAAGAAGGTAGGA-----------TCTGTCCTTCCTAAGTGCTAAGGTAT-TTTGGTAATAACTTAagagaatttattctttt--atctgaaTTAGTATTTTGAAAAG------------CACTCCCTCCTAATTTGCCGTACTACTGAAGGCAagctctccttcccttccctgatCTGACTCCCAATGAAACTGCCCCAATTAAACTTATCTCCAGCTGAGaaaatttttcccctttgctTAGAAATAAAAGTAGACACACTTCAAGACTTACTACTTTTGTTTTGGGTTATTTTTCCAcatgaacaaaagaagaaaaaagtgatacaaacaaaaacagtctattttggggctggggatttagctcagcggcataagtgcctgccttgcaagcagacagtcgtgagttcgatccctggtaccgataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaagtctattttaaGGGTCTTTAAGGTTATGATAACCAAGTCCATGAGGACAgagtatacattttatttaat--tgtaaagggcctgatt--ttagtgtgaaaatgcctcttaatttctcttttccttaaagCTTTCATGTTTAACAGTTAA

a score=25506
s chr3           152448748 442 + 160039680 TTTTATTTTGTTTTGTCTTTTTTGTCCCAGGCTGACATAGGGCTTCCATACCCACAGAGAGTTGTTCAGTTACCTGAGATCATGTGGGACCAGTACACCAATAGCCTTGGGAACTTTGAAAGAGAATTTAAACACCGCAAAAGACATACTAGGAGAGTTAAGTTAGTTTTTGATAAAGGTAAGAACCCACACGATAAGAATTTAATGAGGAAAATGTCTTGTAGTGTCCTAATTGAATAATTGTGTGTATGatttgatttttagtagggttgcccgctagaccaaaaagtcctttagatcctaagaaggatggagaatccctTTCGTACTCCATGTTGCCTTTGAGTGATGGTCCAGAAGGCTCCCATAACCGTCCTCAGGTAGGCAGTGTGAGACACCTGAATAGCATG-----------------AAACTG----AACGGTGTGCTGATTTCTGTTCTTAA
s HiC_scaffold_1 139264838 452 + 233722169 ttttgttttgctgtgtctTT------CCAGGCTGATATAGGACTGCCATATCCACAGAGAGTTGTTCAGTTGCCTGAGATTGTATGGGACCAATATACCAATAGCCTTGGGAACTTTGAAAGAGAGTTTAAAAATCGTAAAAGACATACTAGGAGAGTTAAGTTAGTTTTTGATAAAGGTAAGAAATCAtgtgataa-aatttaattagtgAAATATCTAGCAATATCTTGCTTTAATAATTCTG----TGGTTTTGCTTTTAGTAGGTTTACCTGCTAGACCAAAAAGTCCCGTGGACCCTAAGAAGGACGGAGAATCTCTTTCGTACTCTGTGTTGCCTCTAAGTGATGGTCCGGAGGGCTCCCACAGCCGGCCGCAGGTGAGCAGGCTGGCATGTTGGAGTATGATGGTTagagttttaggaaaaaaatggagtaacattttgctgttttgtgttcTGAA

a score=35610
s chr3           152449540 1862 + 160039680 TGTATATATTAAAAA------TTACGCAAAGATGTTTTGAAAAT-TCTAAAG--GGTGTTCTTT------------GAGTATACCCTTGTATTTTCCATTT----ACCTAAAGCCCTTTTTATATGCAGATGATAAGAGGTCGCCTGTGTGACGACAGCAAGCCCGAGACCTTCAACCAGCTGTGGACTGTTGAAGAACAGGTGACACATGCACGCTTCTTGATTCTTTGGGCT--AAAAGGAAGTCTAGACTGTCACAGCGTTGTTAGGCAAGCGTTAACTGTTGCATTTCATTCCTTTTGCATTTAATTTCTTTAAATTATGAGTTTAAAATATTTAGAAGTACTTATAAACCTTTTTGTA----TTATGAATTTTGGGTTTTGAAG----ACAAATTGTTTGAGAAAAAAACCTGGG--TTTGAGAAGGAGGGTAGACATGGATG-----------ATACTCTTAAAA-GCAGCTGTGAGAAAGA--AAAGCCTCAAGACAAGCAAAGCTGTTATCAG-TTGCA-TTTTAATTTCTGTTGTGGG--GGAACTGAGAAGCTAGACTGGCATTCTTGGAACATT-TCCTGTGTGTTCCCTTCAGCTGAA------------------------------------------------------------TTGAGGATTGTATAAAAAGCC--CAGGAAGTTTGATTTTA------TGGATTAAATGTTGTGTGTCTCAGGGTTTTAATATTCACTCAGGTGCTTGAATGACAGATCACGCAAAAGAGGAAGAGTCTCT-----TATTCCAAATCCAGTGAATTTGCATGT---TTTCTGTTAAAGCTGAAGG---GAGTGTGTT-CAATCAAG-AAAAGATAGTTGGGAAGCGGTGTTCACt-------------------gagatgtat-------acagctccactatatatctcctctgacttcttgtgctattttgccactgaattgaatagaagcctttataagggtttttataggtgtctcctctaatctcactttgcctgtggcaccttagcctcctacctggaacggttc-ctaccttgagaatctctaataacgtgatatgacatctagagttgggaaagctttactgTGTTTTGAA-TGAAATGTGAGTGTATTTATTCAGAAA-TCCAGTATTTTAAATGGAATCCTTTATTCCATTAAAATTTGTTCCTGGATTTGGTGCAGAAAAAACTCGAACAGCTACTCCTGAAATACCCTCCCGAAGAAGTAGAATCTCGGCGGTGGCAGAAGATTGCTGATGAACTGGGCAACCGGACAGCCAAACAGGTGATGGGA----------------------ATGGCTGCGGACTGAATGGTAGATGGTTTCCCACGGACAGT------TGATAGCATTGCTAGCTGTAGTGTATCAG--------TTTTAAACTGAT--TAGCCCTGCTTACTTTTGTGTCACTAGCTTGAACAGCATAAGTAACACTGCTTAGTGTCAATGTAAAACATtatgcatgtgcgtgtgtgtgtgtgtaatatatacaaattatatatacacacatgtatttatgtatgtatTGGACCTTGCCTCTCTTGAGTGTTTAGTGAGTGTGCTGACAATGTCCTTTTTTGTTAGACTGTGCTATTGGATTTTGTGGCATTTCATTAATACCATCCCTGATTGTCTTGTTTTCTTTTCTG---TAGTACTGGCAGATAGGGCTTCCTGTGTGCTCCTCGGTGCTCACCAGGAGGAATGATTGCTTAGCTTTGGGATCAAACAAATGGAAATTGACTTGAATTGGTTTT-GTCTAGGTTATAACTTATAAATGTCTTTGATGGCAATTTAAA--------------------------------------AGTTACTTCTTAATTTAATTG------------TTAACCACTTAAAGCATCTCAAATATCAGAT--TATTTCATTATGTTGAAAGAGCCGTCATGTTTCTTTAGGTCGCCAGTCGTGTACAGAAGTACTTCATAAAGCTAACGAAAGCCGGCATACCAGTTCCAGGCAGAACACCTAACTTATATATATACTCCAGAAAGGTAA
s HiC_scaffold_1 139266222 1948 + 233722169 TGTATACATTAAAAAAACAGTTTAC-CAAAG-TATCTTGAAAGGATCCATGGTTGGTGTGCTATTCAGCTATCACAGAGTAGCCTTTGTTATTTTCTCTGTGGAAAAACAAGGCTTGTTTTATGCGCAGATGATAAGAGGCCGCCTGTGTGACGACACCAAACCCGAAACGTTTAACCAGCTGTGGACCGTCGAAGAGCAGGTAA-----GCACACTT---GAACAGTGCAGCTTGCGAGGGAAGTTGTGGCT-----AATGTTCGAAGCCA---------TATTACAGATCACACATTT--------GTTGCTGTATGTgggagtttaaaaatatttacacttaGTTTTTAACCTTTTTGCACATTTAAAGAATGTTGGCTTTTGAGGCTGTGTGAACTCCTGTTGAGAAGGAGCTGGGGCTTTGAGTGGG-GAACAGACATGGCTGGAATAAAATGGATGTTTTTGTAGTACAGCTTTGGGTGAGACAAAAACCAGGAAGCCAAGAAACCAAGCCTCAGAGTACAGTTTTACCTACTCCTGTGGGAGGGAGCTGA-----TAGA--GGCAGCCC-AGAACATTATGTTACGTTTTCACTACGGCTAGAGCTGTTTGTGGTGAAGTTGGAGACGCAGCCCTGTGGTACTAACACTGCAGCTCTAGTAGGTTTAGTagtttattaaaagctttcagaaacCTTTCTTTCAAACATGTAGATTA----TTGTGTATCTTGCAGTCTGTGTAAGACTTTAGAAGATAGGAGAAC----CACACAAAGGAAGGAGAAGCTCTATTAATATCCTGGATCCAAAGAATTCACACGTGTGCTTTTGCCAAAACTGTAGGAGAGAACCTGACACATTCTAGCAGAAGATGGTC----AGTGGAGATCATTCCAGGCTATCAGATATGACAGGATTTATTTACTTACCAGTTTCCTTATGCATTT--TCTGCTTTCTTGTGCCTCTT----ACTGAAGTTGATAGAAAGCTTTC--AGATCTTTCATAGCTGTATTCTCTAAtctcattttctctgtaaaatcttAAGTTCCTAAGTGGAAGTTTTTGTTACCATGAAGATTCCTA-----GTTACATAAGCCCCAAGGGTGAGAAAGGAGTAttatactttgaaataaaatatgaatgtgtTTTTGTAGaaacttttgtgttttaaattgaacacttt-ttttacttaaatttgaTCTTATGTTTGGCTTAGAAAAAACTTGAACAGTTACTCCTGAAATACCCTCCTGAGGAGGTAGAATCCCGACGCTGGCAGAAGATCGCGGATGAACTGGGCAACAGGACAGCAAAACAGGTGATGAGGGGCCCGGGCCCGGGCCCGGGCCAGGGCCA-GGACTGGGCTGTGGGTTTTATACGAGGAAGAATGGTCTCTAGTGTCCTTTCTAGCTGTGGGACACAAGagtggtgtttttaaaaaaatactagcaTTCTGTACTTTTATGttgct--ttcagaaaacaaaa---acttgagtTAGTCTTATTTTGGATCATT--------------------Gcaaaatactaacaaaa-------------------------ataTAGTGGACTTAACATCTcttaaatgtttaataattatGT-----ATTTACTTTCTAATTAGACTGGGCTAT-GAAAGTTGTGACACTGCTTCAGGAT--TCCCTGATTGTCTT---------TCTGAAACAGTATttacaaattgaa---------------------------------aatatatatttagcttTGGAATCAAATGAATTTGAAtgtacttaaattatttttcatctagG------CTTAAAATTATGTTTGTTGACAGCTTAAATTTTTTACACTTATGATGAATTTTAAgttattatattaaattattgcATTAATTAGTTACACAtgtatggtttaatttttttaaactactcGAATATTGTGTGTCATCTCATTATGTTAAAACGATTGTTATATTTCCCTAGGTTGCTAGCCGAGTACAGAAGTATTTCATAAAGCTAACTAAGGCTGGCATCCCAGTTCCAGGCAGAACGCCCAACCTATATATATACTCCAAAAAGGTAA

a score=13418
s chr3           152451914 259 + 160039680 ATATGTATGGTTTTGTACTTTTGATTCTGTTAACGATTTTCC---ACTGTCCCAGTA-AAACACTTGTTTTCTCCTCTAGTCCTCAACAAGCAGGCGACAGCACCCCCTTAATAAGCACCTCTTTAAACCTTCCACTTTCATGACTTCACATGAGCCACCGGTGTACATGGATGAAGATGATGACCGGTCCTGTCTCCATAGCCACATGAGCACTGCTGCTGAGGAGGCCTCAGTAAGTT---ACTTGC---CTGGTTTTTATACAGAT
s HiC_scaffold_1 139270889 269 + 233722169 acatttatattttcatagttttatacCCTATAATGATTTCCTTTTAATGTCACAATttacaaatttgttttttcacttagtCTTCAACAAGCAGACGACAGCATCCCCTTAATAAGCATCTCTTTAAACCTTCCACTTTCATGACTTCACACGAACCACCAGTGTACATGGACGAGGAGGACGACCGCTCCTGCTTTCAGAGCCGCATGAGCACCGCAGCAGGAGAGGCATCAGTGAGTTTTGTTTTGCGTTTTGCTTATTGTACAGAT

a score=13687
s chr3           152455724 304 + 160039680 AATAAATGTCAGTACAAAAATAATCAG-GATTCTGTCTTTCACAATTAGCCCATTTTAATTATCAAGCTAACACTTTTATA--------TTTGGTTTTTAACAGGATGAAGAAAGCATTCCTATCATATATAGGAGTTTACCTGAATATAAAGAACTATTACAGTTTAAAAAGTTAAAAAAGCAGAAACTTCAACAAATGCAAGCAGAAAGTGGGTTTGTGCAGCACGTAGGCTTTAAGGT---------------AAGGAACT----CGTGTGGTTTGTGAAAG-GATGAGGGCTTCTCTAAGCGGCTGCTGGATTATCCAACTCTGAAATC
s HiC_scaffold_1 139273678 332 + 233722169 AATACTTGTCAGTGGAAATGTAATCTGTGCTAGTGTTTCTTGCACTTTGCTAATTT-AATTGCTGAACCAACATTTTTGtgctgtgttgttttcttttcaataggATGAAGAAAGTATTCCAATCATGTATAGGAATTTACCTGAATATAAAGAACtattacaatttaaaaagttaaagaagcAGAAACTTCAGCAAATGCAAGCTGAAAGTGGATTTGTTCAGCATGTGGGCTTCAAGGTACatactacttaaaaaaaaaaccacaatgtgTAGTTTCTGAAGGTGATACAAGATACATTAAATGGTATCTGGATTGATAAATGCTAAAGCC

a score=115618
s chr3           152457598 2793 + 160039680 TTTCAAGCAAATGTTTACTAGTGGCAAAATACTCAACTTTGAGGTGATTGGCTTAAAAACTTCTTGGATAAATGCATGGGCATTTCTCATT--TACCAGTAGT----------------CTGAGCTTCAGT-----GGCTGGACCCTTTATCT---ATTCCACTGGGACTTCTGTCTGACTTA----AGCAAGTGTGTTATATCACAGC----ATGGAGGGAGGGTATGTCTTTATCATATCATGTGCTTCCTGGTAGA-----AAAGAAACACAGCCAAGTACTCTTCTGAGTTTCTG---TCTGTTGCAGTGTGATAACTGTGGTGTGGAACCTATCCAAGGAGTCCGGTGGCACTGCCAGGACTGCCCTCCAGAAATGTCTTTGGATTTCTGTGACTCTTGTTCAGACTGGTAAGTGTTTTAT------------TTCAGAAACAGTAGA----------CTCAAACAGTGAACTTTATTTCCAAACTTGTTTAGTTAGAGTGTAATTGT---TTATGCATTAGATTTTATTCTAAGCAGTTAAAATCTTCCTTAAATCACACCAGATCTCAAGCAACTTTCTGTTAAAACTTTCTGAGAGATTAAGTGGGAAGATTTTTTAATGGGTAAATC---AAAATGCATCTGGAGTCGTGTAATAATGAAATGGGTCTGGAGTCATGTAATAATG-AGATGCATGTCTGTGTGTTTTTTACTTGCAGCCCACATGAAACAGATATTCACAAGGAAGACCACCAGTTAGAACCTGTTTATAAGTCAGAGACGTTCTTAGACAGAGATTACTGTGTGTCCCAGGGCACCAGTTATAGTTATCTGGACCCCAACTACTTCCCAGCCAACAGATGACATGGGAGAGTGTCGTCCGCACTAGTCCTCGTCAACACGCAGCAGTGGCATCATGGTTAATGGTGTGCACGGTTTG-------------------------GACACTCACAGCATGAGAGCTCCCCGAGTGTTCTCGTCCAGTACAGCTCTGCACTGTGTGGCTGTA-------GATCAGCAGCTGAACATTC--CTGGTGAGCCGAGAGGTTCCCTGGTGAGATTTTCACCACTAACCTAAAGCCTTGTAGGTGGTGGTGTTAAATGGGTGAGGTGGAAACAAGAGCACGTATTAATGCCAGAGTCAATTCCAAAGGTTTAAAAGACCTCGGTCATAAATATGATAATGAAAGACAAAGTATTTATATTAAATCAGTTTAGTAGCTTTCAGTTTTGTGAAGATAGTTTTCAGCGCAGAAACAGACTTA--TAGATGAAGTTTTAACCAGTGATGGTGTTTGCTTCTAGGATGTGTACTCTAAAAGAACTCACTGTCTGGTGGTCACTGATGGCCTGTAGTAGACTGGAGCTGCTTAACGGT-TTGATACCTAA---CTTCTAATCACGATGACCTGTCC---TTACCAAGAGCAAAGCAAGACA-----TAGCTGTGGCTTTGCTTCTGTAACCAGCTCATGGGGTGTGAATGTCATGAAGTTGTCTCGCTGATATATTTTT--AATGTCATGTTATATGAGATGATCATGTGATGTGTACAGACTATGTTGAGAAGTGCCAGTGGTAGTAAC--TGTAAAG--TCTGACTCACACC---ATTAATCCCTCTAAAGTACACAGCCTTCTGCCTCTGTG--TGGAGTTGTCAGTACAGCTCGTCAAAGAAAACTGCCTAATATAAAAATCATATATATGGTGATAATTTTCCCTCTTTTGTAGTCTGCACAAGATCCATAAAAGATTGTATTTTTATTACTATTT-AACGAGTGATTAAATGTAGTCTGCACAGTGAGCAAGAGTTCACA---ATTCTTTTTATACTGCTGGATTTTGTTGTGCATCATTTAAAACATTTTGTATGT---TTCTTATCTGTGTATACAGTATGTTCTTGAATAATGTTCATTTGTCGGGAGAACTGTGAGAAATAAACGATGTGGATA-TGTTTGTTTATATCATAGAAAGCTTGTTGTGGATTCCTTTGGGTCAAATTTTGATTTTTTTTCAACAAGTGATAAAAGTAGAATTTATTATTTAAAAGTCTGTTTTTCATCTGT----ATTTGCTTTCTGTTCTTTATAAAGGGTGAAG-ATGTATTGT-----------------------------------------GTTAGTGTTCTCATGTAGCGTG--CTGAAACACTG-------------CACAGTAAGGGTGCTG---------------------------ACTAATGTCCAGATGTGGAA-CCTAAATAGAAGTCAAAATATTATTCTAGTACTTTTTCTTAATAAAATTAAGTACCTATGTGTTGAAACAGGTGGTTTCCAAAAGTTATC----AAAAAAAAAAGATAGTATA--TATCCTATGGTAGATTGAGTATTA----ATACTAG-TCTAGCTTTTA-AAATTGTTTTTTTTTTTCCTGTTTTTAAATTCAGGGAACATTATTTACTAATTTTTTTCAATACTCAGCAAGGTATTAAAATCTACCCTGaatttttttaattaagaaaaatacagaattttaaatatagaaaagagaaa---tttaaataatatattGATTATGTATCACTGGTCATATTGATACAGTCTATTGTACTCAGAAAAGTTGACAGGTTTTTATCTCTGAGCTATTAGTGAAGGAGAGGCAG-----TTGAACGATGTGTCTCT----ACACTAAATCCTCAGTGCACATGCC-GAAGGGCTTCCGTCCATCTG-CAATATGCAGGACAGTTGCCCCTGTC-------------------------TGTATAGAAATAGTACCAGATAGTTGT----------TCAGATCCATCCAGAAGTCCCATAGAGG--TGAAGTACAATGTGGAAGGG---TATGAGCGGTACGGTTGTAACGTCATCAGGAGCGA-ACAAGCCTACTTGAATGCATTTT---AAAGCTG-----------------AGATAGTAATGTGGATT-TTTCCTGTTTGAAGAGAAAATGTCTTTA-TTTGGATTTTTCAGCTCTAAGCACACTGTCCCCATGG
s HiC_scaffold_1 139275504 3038 + 233722169 TTTCAAGCAAACAGTTACTAATAATGAAATGGTCAAGTTTGAGATGATTTACTTAAAA-CTTCTTAAATAAATTAGAGGGCATTGATGATTCTTCCTTGTAATAACGTTCTTCCCCCATCTGAATCTTGATTTTGAGGAATGACCCTTTACCTGGAACTTGGCTAGAACTTGTACCCAGTTTACAGCACTATTTGTGTTGCAAAACTGTTGATATGAGGGGAAACTATCTGTGTG-CACATCATAT-TTTTCTAGCAGACAGTAAAAGAGACACAGTGTAACACTGTCCC-----TCTGGAATCTGTTGCAGTGTGATAACTGTGGCGTAGAACCTATCCAGGGTGTTCGGTGGCACTGTCAGGATTGTCCTCCAGAGATGTCTTTGGATTTCTGTGACTCTTGTTCAGACTGGTAAGTGTTCTCTGCATTTGTGGTCTTCAAATTTGATAAAAACGGAGCTTCTCAGACCATGAATTTGATCTCCAAACTT------CTAAAAAGTAGTTCTACTTTGGGAATTTAATTATGTCCTAGGTGAgtaaagtttt--ttgttttatgccGTATCTTGAGTAGTGTTCTGTGAAAGATTT----------GGATGGGTAAAGCTTTAAACAGGTTTAGCTTGAGAAAGTTTT----GTCATGTGCAGACTAGATGCATTCAGTGCCATGTAATGATGCATTtgtatg-ctttgttttttttctctgcagcctACATGAAACAGATATTCACAAGGAAGATCACCAACTAGAGCCTATTTATAGGTCAGAGACATTCTTAGACAGAGACTACTGTGTGTCCCAGGGCACCAGTTATAATTACCTTGACCCAAACTACTTTCCAGCCAACAGATGACATGGCAGAGCG-CATCCTCACTAGTCCTCTTCGACACATAGCAATGGTATCATTGTTGATGATGTGCA--GTTTGGAAAGGGCCTCTGCTTTTCCTGAATGACACTCACAGCATGAGCACTTCCCGAGTGTTCTCGTCCAGCCCAACTCTGCCCCACGTGGCTCTCCAACCCTGTTCAGCAGCCGAGCGAGCGTCTGGTGAGCAGAG-GGTTCCCTGGTGAAGCTCCCGCC----GCCTGAG--CCTGGAAACGGCGGT-CTAGGTGGGCTAGACGGAAGCGAGAGCACACATTCATGTGAGAGTAAATCCCAAAGGTTTCAGAGAACTTGGTCATAACTATGGAAAC--AAGACAAAGTATTTATATTCAAACACTTTAGTAGCTTTCAGTTTTGTGAAAATAGTTTTCAGCACAGAAACTGACTTCTTTAGACAAAGTTTTAACCAATGATGGTGTTTGCTTCTAGGATCTATACTCTAAAAGAACTCACTGTCCAGTGGTCATTGACGGCCTTTAGTAAATTGGAGCTGCTTAACCATATCGATACCTAATTTCTTTTAACCACAATGAACTGTCCTTGTTGTCAACAGCAAAGCACTACAGGAGGCAACTGTGGCATTGCTTCT-TAACCAGCTCATGGTGTGTGAATGTTATAAAATCGTCACtcagatatattttttaaatgtaatgttatataagatgatcatgtgatgtGTACAAACTATGGTGAAAAGTGCCAGTGGTAGTAACTGTGTAAAGTCTCTAATTCACAACATTAttaattcctttaaaatacaCAGACTTCTGCCTCTGTATTTGGAGTTGTCCGTGCAACTCATCAAAGAAAACTGCctaatataaaaatcatatatatggtAATAA-TTTCCCTCTTTTGTAGTCTGAACAAGATCCATAaaagattgtatttttattactatttaaaCAAGTGATTAAATTTAGTCTGCACAGTGAGCAAGAGTTCACATGCATTC-TTTTATACTGCTGGATTTTGTTGTgcatcatttaaaacattttgtatgtTTCTTCTTATCTGTGTATACAGTATGTTCTTGAATAATGTTCCTTTGTCAggagaactgtgagaaataaactatGTGGATACTGTCTGTTTATATTATAG-ATGCTTGTTGTGACTTCCTTT-GATTAGATTTGGATTTTTCTT--AGTAGTGTTAATACCAGAA---ATTGTCTACGGTTTTGCTTTACGTATATGAGGGTTTTCTTCATGTCCTTTATAAAGAGTAAAGAATATATTATGGGAAAGAGAGTGAACTTGAGAAGATCTGTGAGCCATGGTAGTTAGTGTTCTC-CACAGCATGCCCTGGAACACTAAATCAGGCTGGCTTACAGAGGAGAGGCCGAGGCCTGGTTAAGGGAAACAGTGAGTCATTAATGCCTGCATGTGAAAGCCTCGGTTGGAG----ATTTTTATTCTGG---TTGGTTTTGATGAAAGTAAGT-CCCATGTATTTAAATGGCAGTCTCCTGGAAGTTATTATTGACCAGGATGAGATGGTATAACTATTCTAAGATGGATTAAGTACTATATTATACTTGACCCAGtttttgtagagtttttttttttttcgtgttTTTAAATCTAGGTAACATTATTTGCTAGTTCTTTTCAATACATAGCAGAGCACTGTAGTCTaccttgcttttttaaaattaagaaaacaatagagtTTTAAGTATAGAAATGTGGGAACTTTGAAGTAATATATTGACTAAAGATCACTAAAAATGTTAATATGATATAAT------CGGAGAGTGCGTGGACTTCTCACCCTGAGCTGTTAGTGGGGGGAAGAGAGGACTCCTCCGCATTGTAGCCATTGTGATATTAAATATTAGGTGCATATGCCAGAAGCTCTGCCTTCAGCCTGTCACCAGGTGGGTCAGTAGCACTTGCCGGTAACCTCTTGTGACTTCTGTGTTTGTATAGAAACGATACCAGTTAGCTTTGGAGAATCACTCAGAGTCTTTTGGAGATCCCATAGGAGTATGAGGGATGCTTTGGCAGAGGCCTGTGAGCAATACAATTGTTA--TAAACAGAAGAGACACAAACCCACTAGAGTGTGTTTTTCAAGGGCAGATTTTTTTAAGACTTGTAGGTGGCAAAGAGGATTATTTTCTGCTGGAACAGAAGatgtgtttgttttgtacttttcagCTCCAAGCAAATAGTCTCCATGG

a score=13047
s chr3           152458565 300 + 160039680 AGCCGAGAGGTTCCCTGGTGAGATTTTCACCACTAACCTAAAGCCTTGTAGGTGGTGGTGTTAAATGGGTGAGGTGGAAACAAGAGCACGTATTAATGCCAGAGTCAATTCCAAAGGTTTAAAAGACCTCGGTCATAAATATGATAA-TGAAAGACAAAGTATTTATATTAAATCAGTTTAGTAGCTTTCAGTTTTGTGAAGATAGTTTTCAGCGCAGAAACAGACTTA--TAGATGAAGTTTTAACCAGTGATGGTGTTTGCTTCTAGGATGTGTACTCTAAAAGAACTCACTGTCTGGTGG
s HiC_scaffold_1  54645207 291 + 233722169 AGCTGAG-GGAGCCCTGGTGAAGCTCCCAGTGCCTACTG-----CCTGAAGGCGAGGAT-CTGAGCCGGTGAGATGGAAATGAGAGCACACATTGACCCACGAGTTAATACCATAGGTTTCAGGGAACTTGGTCACATCTGTGGAAACTAGAAGACAAAGTATTTCTATTCAAACACTTTAGTAGCTTTCAGTTTTGTGAAAATAGTTTTCAGCACGTAAACTGACTTCTTTAGACAAAGTTTTAACCAATGATGATGTTTGCTTCTGGAAT-----CTATGAAAGAACTCACTGTCCAGTGG

a score=25885
s chr3           152462561 1499 + 160039680 TGTAACCAAAGAAC-TTAATTTCTTGTCTAGCACACACTAACATTTCTGTTTAGGAAACAGTGGGAGGGAAAAAGAAATATGAAAATGACCATGTATCATGAATACATTAACAACT-TCTCTGTAATAGCTCAAATCTGGTCTGTGGCCAAA-------TCATATAAGTGGATCATAATTTTAACCTATATACTGTGTTTGTTTCT------GTTTGGAATGAAAGCTTTCATATGCTTTCCAGAATGATGTGAGTTACAAATAAATAGAGAAAGAATCATCCTGGCTTCCATTTATTTCATTTGTACATAAATGTTTTGAGGAAAAAAAATGATTTTAAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTGCTCACTCATTGAGGA---AAGAGTCATGCAAACCAAACTGAATGTGGTGGTGACC------GAGTGCAAGATGCAGGGGTTTCAG-AAGACACAAGCAACTCTG------------------CACAAAACACCCACGCTTCACGCTGGGATGCATTTACTCACGGA--GCAGGCCCTTGACACAGGCACA----ACACAGGC-----GCTGCCGGACACCGTGTTCTAGGCGTGCCCTCCCTG-------GCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTAT--GTCAGGGAGTAATTGTCTCAGATCAAAACTACAAGTTGGT-TTTGTCCAGTGAGTGAAGTAACATCATCTCTCATTCTTTTAAATGATCTCTGGTCTCTGGTACTAAAGTACATAATTGCTGAGCCGAACTGCCATGTGGAGAGGAG--CGGCTTGTAGGCTTGGCCAG--------AGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCA----------GAGTGGGTGGGACTGATTGTC-TGGGCTTTGCTCTCTAAGAGAAGCTGATCAATGCCATTTTGAAATATTTCTGTCAGGTTCCACTGGCTTGGTACCT-----TGTATCCCATAGGACATTTAAAAGGCCCACTAGGGCTCCGGGCCCTCTCATGGATGGGAACTGAGGAAGC--AGCCAGTACCAGATGAGGTGTCCAAGCCTGTCCCCATGCTAACAACCCACATCAGGGAGGAACAAATAAGCCCATGAGAAGGAGGAAGCTGTGATGGAGAAATAGGGATATGCTGTCCCTGTG----------TGGTGGATCAGACTGCAGCCGGCCCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTGCT--------------CTTTTCATCCAAAGA------------------------------CGAGTGCCAGAGTGGGGA--CAATTGCCAGCACGAGAGAAAG-----------------------------------GTGGACAGTCCGA--------AGTGTACCATGCATGATTTCCAGAACCTCTCAGGAGATGAGCTGGGAAGG-----ACACAGCCAGCGAGAATGGGTGGGGATGGGGACA---AAGCGAAAGGTGTTACGG----GTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTTCTCCTTCAGAAAACAGAGTCAATAGCTGTGCAGAGCTGAAGAAAAACTTGCTCTGGTGTTCCCTCTGCATTTACCTGTACTTGAAAGGAAAAGAGTTA--TTAACCTTCT-GACTTGCTTT
s HiC_scaffold_1 139280080 1606 + 233722169 TGCAACCAAAGAAAGTTAATTTCTTCTCTGGGGAACACTGGCGTCTCTGTTTAAGAACCTG---------------ATTGCAACAGTGACCGCATATCATGAACACATTACCAGTTCTCTCTGTAATAGTTCAAGTCTGGTCTATGGccaaaattaaaaccatattaaTGGATCGTAAGTCTCAGCTAT-TACTGTGTTTGCTTCTAATTTTGTTTGGAATAAAG--CTTCAAGTGCTTTCCAGAAAGATGTGAgttacaaataaatagaaaaagaatcatcctgtctttgatatattttatttgtacatatccatttcaaggaaaaaaa--gactttaaaaatacaattctgTCCTGGAAATGGATCCTTATTTGCACAAtgattgaagagaaaaaaatcatgcaaACTGAAACGACAGTCTTTTGTACCACAGCAGAATGAATGATGCAGTTATTTCTGTAAGACACA-GAAGCTCTGATTTTGCAACTGATAGCACAAAAGAGAACCAAACTTCAC--TGGTGTGC-----TGCACGGTTTGCAAACCCCTGGAAAAGGCATGGGTGAGACAAGCAGAAGGCTGCACAACACCTGCTTGCTAACATGCCCTTCCTTCCCACCCACAGCCGTTG-GTCACTGTGCCTT----TTCATCTG-CTGTACTGGTGAATGGGTGGACATTGCAAATCAAAACGGTAAGATGGCACTTGTCCAGTGAACAAAATAATGAGTCATCTCATGCTTC-GAATTACTTTTGGTCACTGACATTGT----TAGAGCTGCTAACAGGCATGACCAGGTAGAGAGCAGACTAAGTCACACAGTTACCCCAGTTCTACTAGCCATTAGCA-----GGCAGCATTCCCAGGAGCCAATTTCCTAAAAACAAATGGAGAAGGTGACA-TGATCATCCTAGGACTTGCCACCCTGGAGAA-CTGAGGATTCcagttttaaagt--ttctttcaCATGGGGCTGGCTCCATAGCTCACtgtgcaacccatgg-----------------caagagcCGTGG---------TGGGCAGGCAGGGACGTGGCCGAGCCA-CCCTAGAACAGGCCTCCA--CCTGTCCACGT---AGGGCCCCTCATCCGGGCC-AGCAGGGGAGTCCAGAGAAGGGAGG-------GGTGAGGGGATTGAGG-GTGCTGGCCCCCTTCTGATTAGACTAGATGGCCAGACTCCAGCAAGAACTGGGGCACAGTGGACACAGT--GGCACCACCGTGCTGATAGCAACAGAACAGTgtcagccagggatttagctcagtggcataggcgctcacctggcaagttcaaggttgagagttcgatccccggtaccaaaaaaaaaaataaataaaaggtaacaGCGTGTGAACTGGGGCGGGGACAGGCTGACATCTCCTACTGTACCACGCCTGGCCCCAGACACCTTCCAC---ACAAGCCCAGGAGGTGCAGACAGTGCCAGC-AGGGTCTGTGGTTCACAGGACACTGACGCGA----TGTTAAGGAATGGGCTATTCAGTACGttcctctgtctctccatctggGCTTTCAGGCCTTCAGAAAAGAGAGTCAATAACCTTGCAGAGTTGAAGAAAAACTTCTTCTGGTGTTCCCTCTGCGTTTACCTATATTTAAAGGAAAACGGACAAAGTTAgctttttagttttgcttt

a score=12082
s chr3           152472744 243 + 160039680 GGCGACA-CTTGCCTTCCGTAGCTGTGTTTTCCTCTCGTAGTAGGTGACGACGGGGATGGACGCTCGGTGGTAGGCCTCCAGGCGCTTGGCAATGCTCTTGGCACCGTCCTCCCCCCGCTGGCTGCTCTGGCTTCTCTGAAGAAGGCGGTTAGTCATGGTGTCTGCTGAGCAGTCCATGCAGATCACCAAGTGTGGGTCTCCGATCTGAAGGAG-CAGGGCAGAGCTTGGTCATTTGGGGTTCTG
s HiC_scaffold_1 139290988 242 + 233722169 GGCCACAGCTCACCTTCCGCAGCTGCGTCCGGCCCTCGTAGTGGGCCAGGACCGGCAGGCAGGCCCGGTAGTAGGTCTCCAGGCGCTTGGCCACCGTCTTGGTGGCGTCCTCCGTGGCCGCGCTGCCCGGACTTCTCTGGAGAAGGCGGCTGGTCATGGTGTCTGCTGAGCAGTCCATGCCGATGACTAAGTGCGGGTCCCCGACCTGGAGGGGACAGAGCAGGCCACGCTCA---GAGGCTCTG

a score=6602
s chr3           152478335 128 + 160039680 CTCACCCTTCGTCCAAACTCTTCCCCTTGCTTCACTTCCCGGGGGTAGCCGTCAATCAGGAAGCCCTTGGTGTTGCCCAGGCTGGCCACCATGGCCTCCTTCAGCAGCTCCAGAACGACACCCTACAG
s HiC_scaffold_1 187008790 128 + 233722169 CTTACCCGCCGCTCAAACTCCTCTCCCTGCTGCACCTCCCGGGGGTAGCCGTCGATCAGGAAGCCTTTGGAAGAATCCACCTTGGCCACCATGGCATCTCGGAGCATGTCCAGCACTGTCTCCTGCAG

a score=8310
s chr3           152481523 190 + 160039680 GGGTGTCTGCTTACCGAGGGCACCAGATCTCCACGCTCCATGATGTCACGGATCAGTTTGCTTCTTTCTGACTCTGAGGTCAGTTCCTGGCGCAGGAGCTCACCAGTAGAGAGATGGGTGAAGCCATATTTTTCTGCCAGCTTCTCACACTGGGTGCCTTTGCCAGAGCCAGGGCCACCTTGGGAAGGAG
s HiC_scaffold_1 139293652 190 + 233722169 GGGGTCCGGCTCACCGATGGCGCCGGCTCTCCGCGCTCCATGCTGGCCCTGATCAGCCGGCTCCGCTCCGAGTTCGACGCCAGCTCGGCCCGCAGCAGCCTCCCGGGCGACAGGTGCACCAGGCCGTACTTGGCCGCCAGCTTCTCGCACTGCGCACCTTTGCCGGAGCCAGGGCCACCTGGAAGAGAAG

a score=7128
s chr3           152481532 171 + 160039680 CTTACCGAGGGCACCAGATCTCCACGCTCCATGATGTCACGGATCAGTTTGCTTCTTTCTGACTCTGAGGTCAGTTCCTGGCGCAGGAGCTCACCAGTAGAGAGATGGGTGAAGCCATATTTTTCTGCCAGCTTCTCACACTGGGTGCCTTTGCCAGAGCCAGGGCCACCT
s HiC_scaffold_1 187009607 171 + 233722169 CTCACCAGCGGCACCAGCTGCCCCTTCTCCATGATTTCTGACAGCTTCTTGCCCCTGGCCGAGCCTGAGCTGACCTCTGCGCGCAGGAGGTCGCCGGTGGAGAGGTGGGTGTAGCCATACTTCTGCACGATCTTCTCACACTGGGTGCCCTTCCCCGAACCTGGCCCGCCT

a score=9784
s chr3           152513162 601 + 160039680 TCTTTCTCTTAAGATGGCAGCACGAAACTCCTCAGGCAGTAAAGAAAAACA-TTCACTGTCTTTTGAAAAGCCTTTGGGTTAAGTGTGTTTTGGGACTATTTAAAAGGCTCAATCACATCACCAGGAGCAGTGCACACTCAACTAAAACACCCACAGGTGC-AAAACCAAG--AAGCCACATGCTCCTTCCCATGTCTACAAGTCTCCCAC----AGGCAGCACTTAGACAACAAAGACACACCATGGAGGGGAGAGAGGAAAATG-TTCAGAGAAGACAGAGCCTGTGCGGACTGAAGCTTCAGAAGTGAGGACGCTGCCAGTGAAAA-GCAGGGTCACTAAGGAAGAGAGAAGACTTCCCTTTTCCAGACTAGAGACCA-----AGGCCTGCCCTTTAGGCATGGCTGCCCCCATACAGCGCCACAGCTGTGTACTGCACAGACATTCTGGGCCAAGGGGCTGTGTGGGCGTTGACTGCAGAAACCAATGTATGTG----------------------------------TCTCTAGTTGATGTAAAGA---------------------------TTAATGTGTCG---------ATGCTTCTAATTTTAAATATTCAGAATATAACAGGAAGAAAATAAAAGA---ACAAGGATAAATGAAGGTTTGTAGGTTTTGCAAGCACAC
s HiC_scaffold_1 139307906 652 + 233722169 TCTTTGTCTTAAAATCTTAGTATGAGGCTGCATGGGAGCCAAAGAGCAACAGTTGACTGTCCCT-GAAAAGCCTTTGCAC--GGCGTGTCTGGGGGATATTTGAAAGGCACAGTGGC-TCAC--------ATTCACCCCCTACCCTGCCTGCAGCAGGTGCCAGGGCCAAGGAAAGCAACCTGCTCTTTCCTCCTTCTGCAAGACCCTCAGGTAGATGCAGCAC-------AGGAAGAGAAGTAAGtgtcaggagaaagaaaaggggctCAGGTTAGACA-AGCCCCTGTGAAAGTTAGCCCTGAAAGTCAGGAAA--ACCTGAAACAGTGCAGGATCCTTGTCACTGAGAGAAGGCAGCCCTTTCCCTA--TGGTGACCAGTGGGAGGCCTGGCTTTGAGGCATGTCTGCCAG-GTACAGTTCCACAATTATGCACTGCACAACCATCCTTGGCCAAGGGGCTGAGCGTAAACTGAATCCACTCAGGAATGTTTGTGTTCCCGAGCAACATGTGTGTGGAGAAGGGGTGTATTTCTAATTTGCATGAAGGCACCATATGGGCCACCTGTGGGGGGCCTTGAGGTGACGTGTGAttgaattttttccattttaaatatgcagaa---------gagaaaataaaggatgGGCACAGAT---TGGAGTTTTACAGGTTTGGCGAATACAC

a score=9765
s chr3           152525813 1033 + 160039680 TAAAGCCTAATTAGCAAGTTAGATCATTTGCCAACTATTTTGGATCATTACAATATAGCAGTAGAGAAAGTTCTTGCTGAGAGGAAAATGACCCAGATAAATTTCTTCAATTTTTTTTTTCCAAAGGGAACATACGTTTTGCTCATTGGCCATGCTTTTCTTGGGCATCACTGCCT-GCA-GAGTTTGATACAGAGCAGCTACAGATCTGTGGACCCATGGCTAACGCTCAGCTGTGTTCTTCATTTATTACTTGGAAGGCAGAAtacattcattaccttttctcattgctctgacaaatgtcaggacaagaa-gccaaagggaggagaggtttattt----------tgacccggggcttgggatctatcagaggcaggcaggtaggcacggtggAGGCTGTGCTCTGTGGCTGTGGCAACAGGGGCATTGGTCAGTTCCTTTGACCCTTGGTGAATCTGTGGGGTGGGGAGCAGGGCTCACTTTGCTGTGGCTCCCTCTTCCTTCTCTTTTCATTCAGGCTGG---------GATGGCAGTTCCTTTACTCCGATCTCTCTCTCTGTCAGCAGATCCCTTTGCCCAAAGGCCAGGCTCATCCTTGCCTTCTGCACTTGTAATCCACTCAACTAGACAAAATCAGCTACCACAGGTCATAGGCAAACTCCTGGGCAGGAAGAACTTATTTGCATCTGAAGGAATTTCCGTTCTACACCCTTTCCTTCACTGCTTTGGGTCTGTGGATGACGGAGGGTGAGGACCAAAGTGCAGCTA-AAGGCTGTGGGTGACCA---TGCCTAACATGAAACCCATTATCAGTGATCTGTCAAGATCCCACCAAGTGAAAACTTCAGTGTTTGTATTCACAAAACA----CAAAGACTAGAATGAAAAACATTTAAACAGA-AAATAC-TTGTAGGTTT--AGTTACCTGGTTATCGTAATCTGATCCTGTGTCAATAATCTCTCCAGCATCAAACATCATGGAAGGGTCAAGGTCACTTGAATCTAAGTTTAAGAAAGACACGGTTAGCTGATGGGGACCATCT--GTGTGTTTCTA
s HiC_scaffold_1 139342599  802 + 233722169 TAAAGCCTAGGCAGGCAGTGGGATAGTTTGCCAACTGTTTTAGATCATTAAAATGTAACAGTAGGGACAG-------------GAAAGTGACCCAGATAACTGGCTTCAGTTTTATT----CAAAGAGAACATAAATTTAAGCCCCTGGCTGTG-TTCTCCTGGACTTCATTCCCTTGCAAGGGTTAGAAATACAACAGC---AGAGCCCTGAGTGTGTAGCTCGTGCCAGGACATATTCTTAGTTTACTAGGGGGAGGCACAGAGACAT-----------------------GGCAAACTCTTGGGCAATACTGCC---------------TTATTTCTATCCTAACTAACCTTTGACCATAAACCTTTCCTAATTATCTAATTAA------------CTATCTTTT----------CAAATgggg-----------ttttttga------------------------aacaaggtctcactatgttgt-------------------------tcaggctggccttgaactaatggcaatcctcctactttagcctc-------------------------ctgagtgctgggattacaagtgtgt-----------------------------------gccaccacac-ccagaaactAACTGTT----------AATTAATTT--------------------------------------------TGGATCTGTGAAAAAGGGAGACCAAAGAGTGGAATGGTGCAAGAAATCTGTAGGCTACTACTATGACT--CAGCAATGACATTATCAGTGGTCTGTAAAGATATCAC--agtttgatttataattttaattgtcaTAAAGTATTTACAAAATCTAACATGAGAAGCATCTACGtagagaaatatattttagatttttaattacctGGTCTTCATAATCAGATTCTGGATCCATGATGTCTCCAGGGTCCAACATCATGCAAGGGTCAAAGTCCCCTGAA-------TGAGGAAAGACAAGGTTACCTGATGAAAGTTGTCTGCGTGTGTTTCTA

a score=22653
s chr3           152529431 1004 + 160039680 GAGTCTAGTTCAAGCC-AGGACAACCACGTTTCCTTTCTGGGTGGCTTTTGAGGATAGCAGTGTTAACGATAACACAAAC-ATAGTCAGCTTTCATTAGTCTCCAGTGTAGATGCTGTCTACTTGACTAGTCAAGTGCAGGAAGGTGTGTGGGTGGAAGTGTTTCCCTAATCTCTCACTTGCCTCTGAG-TGATTCCTACAAACT---CCACAGGAACGGAACACAAAGTCTTCCTGAACCCACAGCAGCCAGG-AGCCCCTTGTCCTACTTAGTTTGTTGAATTGGAGACCATTCTTCCAATTGTTTTCAGAAAGTACAATCTGAAGGGCCCTTAAACAACCCAGCGAGTAGGAGCCACGTGCTCGCTCTCGAGACAGCAGCAAATTCATTAGAAAATAATTCTCAGTAGCATCAGAATGAAAAGA--ATTTTGATTA--AAATGAACTTCCTGCTTAGGAGGAAGAGGAGATCAATTATCCTTCCTAATCAAGGGC-TTTGACAGAAACCTTCCTGTATCACTGAGGGATGGCATTTCTTGATACACTGTTGCCACTGGCGACTGTAGTATTACTATATCTC---AGACGAGAGACAAAGCGTAACACTATCAGCTCAG---ATGACTGAATGGTTTGTATTTTTAAAAATACTGGATGCTCAGTGTTCTGGAAACGAGGACTTTACTAATAGCCCAAGGCTCAGCAAATGAACTGGGGAGACAAACACAGGCTGATGCGCCCATTCGGACTATCTTTCAATCAGCACACAGGTCCATGAAGCAGCAGACTTGATTTTCTATCTCAGACGTGACCACAGGATTCAAACTTTTGATTAAAGTAGTCACATGGATCTCA--TCTCCCTATTTTGAGGTTTTCAGTTTATCTTCAGATTTAAAGATATCCTTTTCTTAGATAACAAAGAAA----------------CCACTCCC---------CACCCAGAACATCTGGTGTCTTTTGCTATGACGTAGGGTGGTCTTCAGTAATATTACC--TTCAGGTTGTCTCTGATTTAAGTGGGAG
s HiC_scaffold_1 139347357 1011 + 233722169 GAGTCTCACTCAAGCTGATGACAATCAGTGCTCCTTTCTGGGTGGTTTCTATTGACAGCGTCATGAAAGGTAACGCAGGTTAGATTTAGCTTTCATTTCT-TCCACT----ATTCTCTCCGGGTAACCAGGGAAGTGGTGGTGGCTGCGAGGATTCAGATGCTACCCT--CTTGGCAGCTCTCTGTGGGGTGACACATGTGGCTTTAGCAACATGATTGGAACATAGAAGCCTGTGAAACACATAGCTGCTGGTTGGTTTTCTGCCctacttattttgtttaattGGAAAGCATTCTTCCA---GTTTTCAGAGAATACCATGTGAAGGGCTCTTAACCAGCCTAGTTAACAGATATTGCATATTAATATATGAAACGGGAGCAACATTATTAGAACACTATTTTCAGGAATGAGAGAACAAAAAGATTCTTTTTGTTAACAAACAAATCTCTTGCTTAGGAGACAGAAGAGAATGGAT----TTCCTAATCAAGTGCTTTTAACAGAAATTTTATTCTATCATTAAGGT-TGGAATTTCTTGACACATTGTTGCTCCTGGCAACAGGAGTTTTAATATATCACAGGAGGCGACAGACAAAGGATATCATTATCAGCTCAGAGAACAActga--gctttctttttcttttttcactggtTGTTTGGTTTGCTGAAAAGGGGACCTTTAATAATAGTCCACATTTTGGCAAGGGAA--AAGGAGGTAAATACAGGA-AACGtacacatttttg-tctttttcagtggACAAACCAGCACCTAAGACAACAGCAAGAATTTGTTccttaaaaaaagacagcagg------acTTTTGA-AAACATGATAGTGTGGCTTTCGTTTTTCCCTATTTTGA-ATTCTCAATTTCTTTTGAGGCTTAAATATATCCTTTCTACAGATACCCGAGAAAGGGCTGAGCAGAAATGCAGCACCCGTTAGGGCACACTCAACGCGACTAGTGTT--------GGATGTAGTGTGGTCCTCAG-AGGAGTATCAGTTCAGGTCGTTTCC--TTTAAATTAAAG

a score=10556
s chr3           152533189 318 + 160039680 TAGCCTTTCCCTTCTATTTAGTTTTTTTTAATCTTTATTTTTTGAGTAAGAAAGAACAAGGC-TAAGTATATGGCTACTGTG----------------TCAGAGCTTCAGCCACTGATAAAAGTCCTGGCTCATCTGGATATTGATCTTGATGTTCTGATGGCAA-GGCATGTGGAGACTTACCCATCGGAGCCTCTTTGTTTGGAAACAGCTTGCTGTCGACGGCCACGCTGATGTCATGGAACACTGCGTCTTCATCTCGGTCGGCATCAAACTGGGGGAAACCGAGACAGACAAGTTTGCAACATGAG-ACACATAATCGAGTTGAGTCTGAAA
s HiC_scaffold_1 139356666 334 + 233722169 TAGCACCCTCTTTCTGCATTGTGTTTTGTG--CCTTTGTTTTTAAGCCTGCAAGAACTGGCTGTAAGGCCAGGGCCACCATGAACCTCCCAGCAGCCTGCTGGGCTTCCGCTGTTAATTACAGCCCAAGAT-GTGTGGCTGGTGGTCACAGTGCACTGTCGCCCATGGGATGCGGTGACTTACCCACTGCGGCCTCTTTGTTTGGAAATAACTTGCTGTCAACGGCCAGGCTGATGTCGTAGAACACCTCATCCTCATTTCGGTCGGCGTCGAACTGGGGAAAATCAGGACAGATGAGTTTGAAATGTGAGAATACATAAGGGGAGTAATCCCAAAA

a score=11507
s chr3           152542363 1151 + 160039680 GTAATACTTTAAAGACTCACAGTGCCTGCAGTGAAGTCAGCAGACAGCAGTGGTGGATCAGGGGCCCATGGAATCACTTTGCAGGATTGGGTTTTAAAGGCCTCCTAATCTATTTTAAA---------------ACCTGAGTCACACCTACACAAAGTGGTGGTGGGTGGGGCGGGCAGGGAC-AGTCTGGGTCTGAGA----CACAGCATCCCTGTGTTTTTATTTGGATTCCTGTAGCTCAGCTCTGTGGACTCAAGCTCTGGAGAACTGTTTATCTCTTCATAAAAGGAATTAGGA-CAAGATGTGAAAGAAGACTGGATTCTGGCAGGATTCTGTGCAGAGGGACGCGAGCAGGGCACCGGGAAGCCCTGGACAGCAGAATCAAAGGCTCATTGTCTCCACCTC---------------ATCTCACTGGGAATTCAGATGCCAAGT-------CAACAGGTTTGTTAGGAAAAGTCACCAGAGTAAAGAGATTCCAGACAAGCCTGTTAGGATATTTACAAAATGCCTTAAGAAA-----------------------------CTGGGATTAAAGGCGTGTggaggcagaggcaggcggatttctg-agttcgaggtcagcctggtctacag--agtgagttccaggacagccagggctacacagagaaaccctgtctGGGGGGGAAGGGGGGGGCGGGGAAGAAGAAGAAAAAAAGAAACTGCTTTTAAGTTGAAGCTGTAACAATGTAACTGGGACT--TTTGTGATTGGAATCTAAGAAAGAAGAGGATGCTGAAGATAATCCTGGTTAGCCTTGTAGC-------------------------GTTAGAACT---------GTG------AAAACAGCAGTCACCAGCTCAACACATC--------GCTGGG----AAATACTTCACTGTGATGGTCGTTGGCTGTGTA--TTTTAGCCACTCAATCTCCGCAACAATATTATTTGGACATATTT-CCATCCATGTGCACCCCTGCCACGGGCATGTGCACAGGAACCCCCTCACACACACAAA-----------GGATGCAAAGGAGCCCTggtctggggatgtcactccctattgagtgcttgtgagtacacctaaagctgtgggttcacccccagcactgcaa-aaaCAGTCAATCACTCAAATAAAA----------------CAAAAACAAGAGCCAGGTTTCAAGGGGTTAATTAACCCTTCTAAGATCATTTTAGTGGCAGGGACAGGGGCTGAGCACACTTGTGGCTACACCAAACTCTGAGCT
s HiC_scaffold_1 139360132 1201 + 233722169 GCAATACTTTAGATATTCCTGGTGTCTGGAA-GGACTCTGTAGTTA-CCGTGATGGGGTAATAACGGTTGATATGATTTTGCAC-ATCATATCTGTAAAGCTGCTCAAATAATTATAAAGACTCCCCCCAAAATACCTGAGTGACAT---------------GGGGTTGGGGTGGATAGGGACCGGCCTGTGTCTGAGAAGACCAGAGTGGCCCTGTGTTTGGATGAAGAGTCCC-TGTTTGGCCCCAATGGAACCAAGCTTGGCAGAATTTACTATTTCTTAGCAGAATGAAATAACAGCAAGAGATAGGaaagatatgaacacagacatg----tATATGAAGGGAT-CATGCAGAGCCACTGAGAGCTGAAGACATCTGA--CAAAGCATCACTCTCTCAGCCCTCTGTACAGGATCTCTATTCTACTAGCCATATAGATTCTAGATAGCATCCTGAAAATTTACTTGGGAAAAGTCAACATAAGCAAGAGACTCCAGAGAGAACAGTT-------TTGtgaattgttttaagaaaaaaaattagccaggcctggtgatgttctcctgtaatcctagcacttgggaggctgagacagaaggatccttgcaaattgagactagcctgggctacagtgagtgagcttaaggccagcctgaactgcatagcgagaacctgtctc------------------------aaaaaaaaaaaaaaaaattcccctgcACTTGAAGCTTTAACaatg-agtttgaattattttgctaTAGAAACCTAGAAAAGAAATCTA-ACTCAAGGTAATTCTGAGTACCACATTAgctcagaaaacattttcaagaaTCTTGGTCAGCACCCAACACCAAGCGGGCTCTAAAGCATCAGGTCACATTTCCATTCATCCAGCAGCTACTGTGTGCCAAACTCTGCACAGTACTAGAAATTTGCTTTATACATTGCAACCATCCAATCCCTGTAGTAACACTGTAAAAGAGTCTttgttatcc----------------------------------ccattttacagattcaAAACTGAGTTCGGGGAGAGGAAGTAGCTCAAGGTAGAGGGCTTTCCT----------TGCATGTGCGAAGCCCCA-------GGTTTAATTCCCAacaacataataaataaataaataaccaaaaagtAACAGTAACCCTCACCCCAAAAGTAAAGCTGAGCTCTCAAGAGATTAAATAACAGGTTTGAGATTACGTAAGTGGCAGATCCAGAATCTGAATCCACATCTGTCTGCACCAAAGTGTGAGCT

a score=9266
s chr3           152554955 460 + 160039680 ATAGCAGAATAACAAGACAACATGTAACCAAGGAAGCCTTGGTAGGAGAATATACCCAGGCTGGGGTTCTAGCAGACAAATTTTACTCAGAAATAATAGATTTCTTGCTTCAAGCAGCGCATTACGGATGGAAAAGTTGGTTTTAGACAGAAGATAAAC---AGGATTGCTGTTTGCTTTTCAAATGACCTCAACG---TTTAAAAATGCTAGGAGCAGATGAAGAGTCGGGCTAATCCTGGGCAGGAGGAACTTGACACAGACAGTGTCACCCTTCTCTGTGGTAACCCCAAGTCTGCCTC-----------------AATGCACTCTGGCTACACTTCCT---CTGTAAGCAGAGTCACGCTGGACCCAGTCAGCACTGTCCGACTGGGAGGTCTCTCTGGGGTTTAGGGA-------CTGAGTGGCCA----GCACGGTTAGGCGCTTTCCTATATTGTTCATCTAGGAACGCCTCGTAGACATTGTTCCCTTT
s HiC_scaffold_1 139375436 485 + 233722169 atggCAGGGTAATAAGAAAACAAGTAGCCAAGAAATCAATGTTGGACAAAGGTATCCAGGTGGTGGCGTTAGCTGACTACTTTAACCCAGAAATCATGGCAGTCTTGCTTTACGCAACCCCTTACTAATGGAAATGGTAGTCTTAAACAAAAGGTAGATGAGGGAATCATTATTTGCTTTTCAAATCACACAGCTGCTTTCTACAAGTGCTGTTAGGAGACACCAAGTCCTGCCAATTCTCAGCGGAATGTAACTAACTTTGGCAAAGTGGAAGAGATTTGTTTGGACTCCATG-CTGCCCATAAGGAAGATGCTTTGGGATGCA-TCTGATCAAGTTTCTTCACCTGTAAACAAGACTTTG-GGGGTCCGATCAGTGCTTTCCAACTTGGAAATTTC-CTGGGGTTTAAGAAGGCAGTGATAAGTGTCCATATGATGCCGTTaagtg--------tattttatatttctgaatgCCTAACACAAATTTGTCCTTTT

a score=28281
s chr3           152561846 1263 + 160039680 ATGCAGCTGGACTTCATGTGGCTTATGGTATTACATTGAATTGAGTTGTTTTCTCCTTGAATGACAGCCAGTCATTCCCCAGAAGAGTTACATCATTTAAAAATATTTGATTCAATGCACACCACATCTTACATCATATAATTTTGCTTTATTAACTTCTTTAAACATCTGCTGTTACATTTTGATACTTTGCTTGAAACTGCACCAGCCCTGAGTGCTTTTAAACACTAGGGCTAGAAGCAAGGCATATATTGCTTTGTTTTGTTTTTTCCTTTAAATTGTTTTTTTTTTTTATTTCTCCTGTTAAGGTTTACTAATTTTATTTGTCCAGTGCTAGAGAATACCATATTAGCATAAGTATCAGATATTTATTATTGTTGTTGGTATTGAAAATGAGA------------TCTTGTTCATTTAATGACCACTTTACCAAATTTTATAGATTGTGAAAAATACCTTTAAGTGTATTATACTGGATTTTCCAACTATAAATGGTTTGAAAATTGTAGTATTTTTCTCTTTCTTTCTT-----------------------------------------------------------------------------------------------------------------------------CTATTAATACCCTGCTTTTAATG-------------------------------------------ACATTACAATAGCAGCAATATTT--TAGAATATGATAAACTCAAGTATAGCAAGCTGCCCTTGGCTTATGCGGAAATGTGTGCGCTGTGCCTGTGTT--------TGCCTC---------CCACTATTACTTAAAAGGA--TAATTTTATGCTTAAACTTTACTTTTAAAACCTCAAGAGAAAAGTGTAATTTTAT-CAGTGTCTTTTGGAGAAATCTGTTTGTATATTCATCCCGAGTTTTTTTTTGTTAACTGTTCTGTTGATATTTGTACAGTGATTTTTTTTTCTCTTCCCCTGTGGCACTAAATCATGTTCTAGATAGAAGTTTTATTTGATTATGGGAATGACTTGATGAatgtattcatttattttctcatttttttattttttattttattttctcatttaCACTCAAAAATGGGCT-ATCTGTACAAGAATTTATTTCAAAGCAATAAACATGGAAGTGTTTATATTCAATGCAACAGAAGCCCCAAGAGTCCTGGGATGCTGGCTAAAGGGCTATTATTTTCATTACTAATAATAGCATCATAGTATTTAGGTATTTAATCGTAGGAAGACCTGTGAGACCTAGTGTCCATGTTAATTCTTGGTTAACGTCCAaggaaattgagatctcaagaggttaatgacttgttcacaagtccctaagggattagtggcataacACAATT---ACACAGATAGAAAATGTGATTCATATTCTTAGAGGACATAGCAGTA
s HiC_scaffold_1 139381311 1342 + 233722169 ATTCAGCTGAGTTTACTGCAGCTGATGGTGTAATGGTTTACTGGGTTGGTTTTTATCT---TGCCAGCTCATCATTCCACAGAGCACTgccatcatttaaaa-tacttcataCATT------TGTATCTTTCATGTTACAATTC--CTTTATTAGGTTCTTTA--------------CCTTTTGGTACTTCGATTGGAATTGCAC-AGTATTGAGTATTCATAAACATTAAGCTCAGGAGCAAGGCATGCA--------------------------GCTGCTTTTATTCTC-----CTCCCATTAAGTTTTGGGAGTTTTATTTATCCAGTGCTGGGGAATGCTGTGTTAGTATTAGta---gatatttaatatttccataaatatagaaaaggagaccatttttaaattcttgttcCTTTTATGATCACTTTACTAAATTTTCGAGATCAACACATGTAGTTTTTAGCTTACTGCTCTTGGCTTTCTAACTATAAATCGTTTGCAAATGGTAATCTCTCCACATTTCTCTATTGATGTTCCCccaacttataaaaataacaaaatgagaccaggcatggtagtgcacacctgtaatcccagcccttgggaggctgaatcaggaggatcactgtgagtttgagggccagcctgaaccacatagcaagaccctgtctcaaaaaaccaaaaaacaaaatataaacaaaaacaaaacaaaaaacacccacATTGAAATGGTAGGAATATTTAGTAagatttattgtaataaattatagta--------tcattttgtttgaaaatgtGTGTAACATATCTTTGCTAAGTATAGTGActtaattttaagtaaatgttattttaaaagaaccaattttatgcttaaattt---ttctaaaac--taagtgatta-tataattttatccagtgtctttttgagaaatctattCAAATATTCATCATGG-----TTTTTCCTAATATTTCTACTGATGTTTGTATACTAATGGTTT------TTCTCATGTGGTACTAAATTATATTCTAGGAATGAGCTTTAGTTAATTATG---ATGAATTAATAAGCatattcatttattctc-----tttgcatttttaat-----------atttaggctCAAGTGTGAGTTGGTGTGCACCAGAGCTCCCTTC-TAGTAAGAAACTTGGGGGTATTCAGGCTCAAGATGACAAGAGCCAAAAGAATCTTGTGAAAGCTGCTAAACGGgtattatgtttattattaaCAATAACATCATAGGATTTGAGTCCT---------GTAGGTCTGGGAGAGTT-GTATGTGTGTTAACTTTTGATTAACACTTGAAGAAACTGAGGTCTCAAGATGTTAACCACTTGCTTTAAAG-----------TTAGCagcataaaattaatgaaatacacaACAAAAATGAGTTTTATATCCTTAGGAGAAATTGCAGTA

a score=11519
s chr3           152586156 456 + 160039680 TCCAAACTTGCTGTTATTACC---TGGTTTGAAACCAACTTTCCAAG----------GGCTGCA----------------------------GGGAAAGTCAAAATGTTCTCTCTCTGTCCCCTCTTACCCCGGAAGCAGAATTCT---------------AAAATACCACATAAATGTGTTCTTGGAAGGCTCT--AACCCATGCCAAGAAGGGCTTCTGGTCACATGAGAGACGCAGCGAGGAATAAAAGCACATTGCCGTGAATCAGAGC-CAAAC---AGACTCCTGACTGGAAGAGAGAAGCCCTGAAGCGCGT-GAGACATGTGAATGGAAAGAACA-GGATATTTTCAGTAGCCC-ATGCCTACACCCTCACTG--TCAGCATGGGATGGAGCTTGTGGGTAATGAAATGTGACATGCGAACACACATACGAGAAGCAGAACTGGAAAAAAAAGGGGC----TCTTAGCTCTTGAGAGGAATCACAGAACAAAGCAGAGGAACTCCTCA--CTAACTCAGGA
s HiC_scaffold_1 139395311 512 + 233722169 TCCACATTTGCTGCTTTTACCATTTCCTTTGAAATCACCCTTCCAAACAGCACCTCTGGCTGAATCTTTCCATCTGGAGATCTCTGGGCTTTGGGGAAGACGATATGAAACC---CTGTTTCTTCTTATCCAGAAAACAGACTCCTCAGCCAGCTCCTGGAGAAGTATCATATAA-TATGTTCTTGGAAAACTCTTTAAGTGTTGCCAGGAAGAGTTTCTGGTCATGTGAAAATGCCAGTTAGGAATAAAAGCACATTACCATGAATCAGAGCTCAGGCAGAAGAATCCTGACT-----------GCTCTGCACTATGTAAAGCCACGTGTGTGGAAAGAGTGTGGGTATTTATAGTCTCCCTGTGTCCACATACTCTCTGGTTCGGCATGGGATGGAGGCAGCAGCTAATGAGACGTGACATTCAGCTGcacataaatgatttaaaaa-gcagaaggaagcggctttttttttacttcagaaaaGAACTGTAGAACAAAGC-GTGGCAGTCATCATTTTAACTTAGGA

a score=3612
s chr3           152589002 80 + 160039680 GATTTGGCTGAGACTTGAGTGTGTCTCTCAGATGTTCCCATGCTAGGAGTTTGGGCCTCAGTGTAGTACAATGT---GGtgtg
s HiC_scaffold_1 140311129 79 + 233722169 GGTTTGGATG----TCAAATGTATTCCCCAAATGTTCATATGCTAGAAGCTTGGTCCTCAGTGTAGAGCAGTGTTGAGGTGTG

a score=5845
s chr3           152589309 280 + 160039680 CATAGCACTAAGCCGAATGCTGCAGTTGCTGTC----CCCCTGTCTC----CTACTTTTAGGTTTTGGTTTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGG
s HiC_scaffold_1  67880679 281 + 233722169 CAGGGCAGTAGGCACCCTCCTCAAGTTGCCCTCAGATCCCCTTGCTCAGATCCCCTTTCAGA----GGCTCCCATTCCCTGTGATCCTGGCTCCCTTTCTCTGTGATCCAGG-CTCT-TGCCCTGTGATCCTGGCTTCTTCTCTCTGTGATTCAGGCTCTCACGTCCTGTGATCTTGGCTCCTGCATCCTATGATCCTGGCTCCTGCACCCTCTGATCTTGGCTCCCTTGCTCTGTAATCCAGGCTCCTGTGCTCTGTA-TCCAGGCTCCTGCACCCTGTGATCTTGG

a score=5251
s chr3           152589337 208 + 160039680 CTGTCCCCCTGTCTCCTACTTTTAGGTTTTGGTTTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGG
s HiC_scaffold_1  67880761 199 + 233722169 CTGGCTCCCTTTCTCTGTGATCCAGGCTCT--------TGCCCTGTGATCCTGGCTTCTTCTCTCTGTGATTCAGGCTCTCACGTCCTGTGATCTTGGCTCCTGCATCCTATGATCCTGGCTCCTGCACCCTCTGATCTTGGCTCCCTTGCTCTGTAATCCAGGCTCCTGTGCTCTGTA-TCCAGGCTCCTGCACCCTGTGATCTTGG

a score=5115
s chr3           152589337 186 + 160039680 CTGTCCCCCTGTCTCCTACTTTTAGGTTTTGGTTTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGG
s HiC_scaffold_1  67880775 185 + 233722169 CTGTGATCCAGGCTCTTGCCCTGTGATCCTGGCTTCTTCTCTCTGTGATTCAGGCTCTCACGTCCTGTGATCTTGGCTCCTGCATCCTATGATCCTGGCTCCTGCACCCTCTGATCTTGGCTCCCTTGCTCTGTAATCCAGGCTCCTGTGCTCTGTA-TCCAGGCTCCTGCACCCTGTGATCTTGG

a score=5391
s chr3           152589348 219 + 160039680 TCTCCTACTTTTAGGTTTTGGTTTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGG
s HiC_scaffold_1  67880744 216 + 233722169 TCCCATTCCCTGTGATCCTGGCTCCCTTTCTCTGTGATCCAGG-CTCT-TGCCCTGTGATCCTGGCTTCTTCTCTCTGTGATTCAGGCTCTCACGTCCTGTGATCTTGGCTCCTGCATCCTATGATCCTGGCTCCTGCACCCTCTGATCTTGGCTCCCTTGCTCTGTAATCCAGGCTCCTGTGCTCTGTA-TCCAGGCTCCTGCACCCTGTGATCTTGG

a score=5553
s chr3           152589401 210 + 160039680 CTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGCTGTGTTCTTGGTCTCTGTGTGTTGTGTTCTTGG
s HiC_scaffold_1  67880753 207 + 233722169 CTGTGATCCTGGCTCCCTTTCTCTGTGATCCAGG-CTCT-TGCCCTGTGATCCTGGCTTCTTCTCTCTGTGATTCAGGCTCTCACGTCCTGTGATCTTGGCTCCTGCATCCTATGATCCTGGCTCCTGCACCCTCTGATCTTGGCTCCCTTGCTCTGTAATCCAGGCTCCTGTGCTCTGTA-TCCAGGCTCCTGCACCCTGTGATCTTGG

a score=22780
s chr3           152594693 1140 + 160039680 tttgttccttcttagaatgaggaacaaaatat---ccatggaaggag---ttacagagacaaagttcggagcagagCCTAAAAACTCATTCTTAATTCCACTTTCTAG-ATGTGTGAGTATAAGGCCTTTCCATAGTGATAAGTTAATTATACAAAAATACTCCTCAC--------------------ACAAAAGAACACATCTTTATATGACCTAAATTATTAAAACCTGAAGGGCATCTTTGATGGTTCAATTCTTCTTTTAAGCTTGGGAAGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCAGAATGGAGTCTTGCTCTTATTTTTGTATTTCCATGAGTGAAAACAGTGGTTTTT-CTTAAGCCAATCATTGTAAGCTATTAGAGCTTTCAAAAATACGTCTATTCATTTTCCTCTCTCTTTTTTCTTTTTTCTTTTGCTAGGATCAGGAGATT-------CCACTAGCAAATCACATTACTCTGGTCGACATTATAATTGTGTCTGAGGTAAGGAAACACAGTTCTTTGAAGCATGACTCACTGTAAAGTGGA-------------AAGGGATTCGAGATCCGTGA--ACTCTCCAAGTAATTAA-GCAAAATTCTACCTGCAGTCAAAGTG---GCGCA--CCTTTGAGCTTCCCTTGTGTCTTA--------GCATCAGCTCTGG-------CTGGAAACTTGCTGGGCTCAGAACTTGTCTCGGGCATTCTCTGGATCTCCAGAGTGACTGCCAGAGGGCAGGGTGATATAATTGTTAATAAATATGGGCTTTTCAACTCCCCATGATATGAGGATCAGAGCCAACAGGATCTTCATTTGTGTGCTCTTTAAGAGGCGGACA-ACAGAATCAGCTTTCATAATGT--GGCTTACACAGACGTTGTGAAGTCGAAATCTGGAGTCTTTACTGAAGAGGCTGCTAAGGGGAAAATAAGTTACCCCACTGAGACTTTGTAGGCATAATCATGATAAAATTTGAGGATAAAAATACTGAAAACAAAGAACAATATG-----AACAATTATATTATCAAAATATAAGAGAAACGCAGCATGA-AAAATGTTAAAGCGG---------TTATTTCTGGATTCTAGACTCAGAGTTCtttttaaatttaatttaattttcttttttttaCTTTCTTCTTATTAATCTGAATTCTTCTTTCACAACATCCACt
s HiC_scaffold_1 139412542 1087 + 233722169 tttgtt--ttcttcagaTGAGCAACAGTGTATGTGTTATGGTAGAAACATTTATAGA----AAATggtaagaaaaagcaaaaaaatcattcttaattCTACTAGCAGGCATAGCCAAGCATTTGAATTTTCTATACTAACATACTAATTAGGCAAAAATACCCCTCACTGAATTATATGCCTgaggcaaagagaaaataaaattttttataaaccaAATTAATGGAATCCTTAGGAC--TCttgattttacaattcttttttaaatttagggaAGTTT--------------------------------------------------------------TTTTTG-----------GT-AAAACATTGATTTTAACCTAAACCAATCATTACAAAAGATCTGAGTTTACAAAAATAggtctttcc----------------------ttctcctttaggAGGGACAGGAAATTTACTATTCCACTGGCAGATCACATTATTGTGGTTACAATTATAATTGTATCTGAGGTAAGAAAAAATAATCCTCTGAAGCATGACTCATTTTTAAACAGAAAGCCAAGGATAGAAGGAATTCAAGATCTGAGAGTGCTCTGTAAATAATTAAGGCAAAGTTATCCTAAAAGTCAAAAGGAGAGCGTAACCCTTTCTGCTTCTCTAATATTTTCAGGATTTTGCTTCCTCTCTGGGGTCAGACTGTCAACT--CTGGGTTTAAACACCATCCC--GTCTTCTCTGGACCCCGAGGTCAGCTG-CAGAGGGCGGCATGAGACCACGCTTAATGAACATGGGCTTTTCAAAT-CCGGGGATGCGGGGCTGAG-GACAGTAATGACACCACTTGTGAGCTCCAGAAGTGTCTGCCACACACCCACACGTTCCCTAACCCCAGCCTCACACAGATTCCATGAAGTAGAAACTCGGGGTCATTGCTTAGGAGGCTTCCAGAGGGGAAATCAATTGCCCTGCTGATGTCTTGCACGCCTGCTCATGATGCGATTTTAAGGCAAAAAACCGAAAAGTGAAGTGCAATATGATTTCAACTCTCCTGCTGTCACAATATCACAGAAAAACACTATGAGAAAGTGTCAAAATGGTAACAGGGATTATTTCTGGGCTGTAGAATAATGG------ATAA-------------------TTTTTACCCTCTCCT------TCTCAGTTCTTCACCCCCAACACCCACT

a score=24152
s chr3           152596340 1415 + 160039680 agacaCCCA-------GCACATCTGAGTATacacacacacacacacacacacacacacGTA--------------AATATTATTTATGTTAAAAAGGATGATAAATATTTCACATAAGACAAATAAAAAACAGAAGTAAACA--CTGCCTCTCTAT-CCTTTTGATATTACCTTGAAAGCTGCACACCCC-CAGGCTGTGCCTGCTTGCCAATGTTAAGAAG-------ACAGAAAATAACATGGCATGCATCTGCCAAGACAGATTGGTAGTTGACATTTCTCCCAAGAAATGCCTCCATTAAAATAAGTAGCTGTTGGCATTGTCTTCTGATTCTGTCACTTTG-AAAAGAAATGAGTAAGTAGCTCTCAGGAATGGATCTGCAAGTCCCACACAGAACCCAACACTTGGAATGGAGATACCAGAG--ATGACCAAGCATGTGAAAAATGAGAACCGATGAGCAGGCACGTGTCAGCTTCCTGAGAGGCTTCTATTGTGCCATCGCCCATCATG---AGGTACTCAACAAACGT-AACTATTACTTATTAACACGA---------ACATGGTTTGATTAGACTCACTCCAAAGCGTTTTGGAGCACGGGATGTAGATTCCCATGGAGGTTTTGTTTCAGTGGCACTGAGCAAAGCCAGTTATCAGTTACACTA--ATAACTACA-ATGCACTCATTTAGCCACTAATGAGATAGATATGAGTGCCATATTGAATGATTCTCAAATTGTTTAATCTCATAA-CTA--CATTCCATCATCCTTCTTCTCTGAGTG---CTTCTGTTTAGTGAAGTTAAGAAAC-TGCAGAGGTCTCCAGCCCTGGTTTTTGT-ATCCTGGAGTTGCCCCTGTCCT---CTCCCACCCT-CATTTTACTTAATGGCATAAGCAGCAATCTGTCCTTGCAGCCTAGAGAAAGCCTTTCTCTAGGCTGCGAGTTCTTCCGGTGTGAGAGAATC-AAGCAGGTTCATAG-CAACCTAGTCATGAACAGGTGAGGCGGAGACATGCCCCTCAACGTTCTGATCTATGGACCCCCTAAAAGA------GGAAGGGAGAGGGAGCCAAT------------------------AGAAGGAGGAAAAGAGAA--GTCAATACCACAGCCTCTAGAGTAGCTTCTGAGAGAGAGACTTTTACACCTGGTGACAGGTTTGGTGACACTTCTTTTGAGTTGAGCTATGTTCAATTTTCTCAGTTCGTTTCATAGGAATCGCATAAACCACCTTCCT---------------------AGAATACAGTAATAGCTCTCTCG-CAGAAATCCAATAGAGTGAAAGAATCAGGATGTGAAAGGCCAACCACATGTGGTTGCCATGACGCCAGCAATACTTCTGGTAGGTAC--------CATCTGTATGATCAGAC-------TGAGGTGAGGTGGCTGGGCATTGTTGTC-------TGAGCCAGCTGCCCCGCTGCAGGCTCTAGTTGCCCTTCTTCAACCTG----CTCCTTCTCCCTCTGAGGTATGTCTAAGAGGAATT
s HiC_scaffold_1 139413643 1435 + 233722169 agacacacacacatgtgcacacacaaacatacacacatacatgcacacacacacacacatacaagcacctcaacaaatatttcttgttctaaaaatccttttt----tttttcataaaaaggattaaaagcACAAGTAAACAGACTCCATTTCTCCGCCTTTTGATAAAAACTTGAAAGCTGCTCATCCTTCAGGCAGCGCCCGCTTGGCAGTGTTGAGAAgtgaaatgacagaaaataacACAGTATGCATCTGCCAGGACAGATTTGTGGTTGACATTTCTTCTGAAAAATGTCCCCATTAAAATAAGTAGCTGCTGGTGTTGTCTCTTAATTTAATCATTTGGAAAAAGGACTGAGGAAGTATCTTCCAGAAGTAGGTTTTCTGGTTTCTCCTGGAACCC---------AGTGGATGCATCTGAAACATGACTGATGATGCAGCAGAAGATAACTGATCACCTGGCACATGTCACCATCC-ATGATGCACCTA-CACGATGTCACTCAGCACGCTCATGTGCCCTAGAGGCGTGAACTGTTCCTTAGCATTATTAGTATTTGACATATACGATGATTAGACTCATTTCTAAGTGTTCAGGGGC---TGGTGTA----------------CTGTATCAATGA------------------------TACACCAAGAGAACTACAGATCCATCTATTTAGCCACTCAGGA-------ATGACAGCGAAGCTTTATAAT------ATTAATTAATCTTGCAAGCCAATCATTTC--CACCCTCATTTTATGGATGAACATGCAGTTCAGAGAGGCAAAGAAAAGTGCCAAGATC-CAATCGCTAGCCTTTGTGACATTCAAGGCAGCCCTGGCTTAGCACCCCACACTATGTTTTGCCTAACATCCTATTTATCACTGAGTCCCCACAGC-------------------AAGATGGGGTTTCCTTGCATATATTAGAAGCTGAGCAGGGTTTTGGATAGGATAGGCATGGACTGATTA---TGAAACTGGCAGCCCTACCCACAG-TCTTGGTGTCTCCTGAAAACCTCCTTGGAAGGGAAGAAAAGTCAATAAAGTGAGTGAAAGCAAGACTGGAAGAAGAACGAAGAGAGGAACATCAATAACCAGGGTCACAAAACAGCTTCT----GAAAGACTTTCATGGCCAGTGCCAGGTTTGGAAGTTCCTTTTTGGAT--------TGTTCA-----------TCATTTCATAGGGGCTGTAGCATCTATCTTCTTGTGAATGAAAACAAAGTCACAGGGATACGGGAATCTCTGTCTTGTCAGAAATCCAGTATAATGGGAGAAACAGGAGAGGAAAATCCAAGCATGCATGGTTGCTATAGCACTATGGATACTTCTGGCCAGTATGGGGGAAACTATTCTAAGAGCAAGCATAAGGATGGAGAGAGGCGTGTGCGTGGAGCTTTCTACATGGTGGGCAGAAT-----GCTGAAGGCTTTAGTCACCCTCTGTTACCCCATGCTCTCCGTCTGCCTAGGGGGTAGGTATGATGAGATTT

a score=35561
s chr3           152614270 1801 + 160039680 GAGCTCAGCCTATGTTCCCTGGCTTC-CAAAAGGTGACTTCTCAGGGCAAGTTTTCTCCT-GTAATTAGAGGCATTTATCTTAGGACTCATTT-GACTATGGCAGTGAGGTCACAGGCTGCCAGCCCCACTGTCACAGCCTCCCTCAATTACAGGCAGTGGCACTTCACCTCCATGCAAAATATTAGTAAATTAACACTCCTCACTCTGCATTCATTTGGGAAATCTGCTCAGCTTG---TGAGGAACGTGAGAGGCAGGGAGTCATTAGGACAGCTCGTGATACCTTTAAACCTTGTACATATCATTAAAAACTCTGGCTTTGTTTCTTGCAGTTGGGATTTAGTCTGTGGGGTTAATTTCTTTTATT-ATG-CACAAGGCAGGAATCAGCACTGTTAATTGGTGAGC--AAAACACAACACGCGCGCTCGTacacacacacacacacacacacacacacgcacacacacatacacaTCATAGAAAAATCCACCCCAATGTTCCCAAATCTTTCTTAGAATTCGGTGTCTGTTT-AAGCCAAAAAAAAAAAAAAAAAAT---GACCTCTGGCCCAATAAGTTGTTTCCAGACCAGATTTACAACTCT--GACTTAA------------AGCACAAATCACAAT-ATGAAGA-----CTGCAAAGAGATCACTATTAACTCGCCATATCTCAGGGCATTAAGATGTGTTCACTGAGGCATCCTTAGGCCT----GTGACTGTGCTTCAGTTGTTACATAAACAGTGAAAGAATGGGGTGGGTAGACATCATTTTCACCAAATTCCCAGCGGAATGCACTTGCCCA----CTAGGCAAGA----------ACTCCCATTCTGAGGCAAAGGGG-----CAGAGAACAGGAAAGGGCGGACTGAGGTTGCCGACCATAGACTAGCTTCTAGGTACGTGCTGTGGATTTG-------TGGCACAAGGAACTATTTTC---TGGCCCATGATC----TCTGTCTTTGCTGTGACTTAATACTTAAGTC-------------------------AGGCTGGCCTTCATCTCTGGAGCTGACACTTAGACATGAAGGGCCT-----GATGGCCTTGTATCATCCTTCGTTGGAACACTGAATATCAATGACCTTAGAACCAACCTAGCATGTAGGAAAACATTTACATTGGCACGTGTGTGTAT----GCATGCACTCTATTAAAGGATCAGAAAGATGGACACCTCCCATTTCAACTCTAGCTCTCATTTA---CAAGACAAACCATCAGAGAACATTATGG----------CAGAGTCAGGATCCGTTACCTTTCATAGGACATGACAAAGGCCAACTTAAACATCAACTCTCCTGCCACACCATGCCAACTGCTCT----CTACTGAGGTCACGAGGCCTCGATAAACAGAGAAATGGGCACATGTTGCTTAAAACTACCCATACTGTGGCTTCAACC-----------------------------ACTTTAAACTCAG------------------ATGGTA----------------------------------------------------------------GAGAACTG---------AGACAAGGTTAA--CTCATCCTCTTTCATAAAAATCCAACTAAA-----------------------------------ATGCAAGGTTTTA-------AAAATCATTATTGCTAAATCATGGGAT----ATTACTAGAAACGACTAC-CCCAAAGCCACTCCTTAAAATCAAGATCATTT------------------------------------------CCAAGTGAGAGCATGGGCTGGTTGGAGGTCTGAA-GGTCATTCTTGTGCAGTCATGTCCCCACGAAGCCAACTTACAGTCACGATGAGTCCCTTCTCTTGGAAGTACTTCACTAGTGGGGCGGCATTCTGCTTGAAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTGGTTGGCACAAGCCAGGAACACCACCAGGTCAGGGGTGCAGATCTGAGGGAAGCAGACAGGCAGA
s HiC_scaffold_1 139428344 2013 + 233722169 GAGCTCGGC-TGTGCTCGCTGATTTTTCACACGGTGACTCTCCAAGGTGAATTTCTTCCCCATAATTAGAGGCGTTTGTCTTAAAGCTCATTTTGGTTCTCGCAGTGAGGTCATGGGCTGTCGGCTGCATCCTTCTCGGCTCCCTCAATTAGAGGCAGTGGCGTCTCACCTCCAtgcaaaatattagaaaattaacaGTCCTCCCTCTGCATTCATTTGGCAAATCTGTGCTGCTCGCAATGACGGTCGTGCCAAGCAGGGAGTAATCAGAAACACTGCTAATTCTATCTGGCCCTGCAAACATCAATTAAAACTCCTGCTCTGCACCTCCAGGTTGAGCTTTGGTCTGCAGGGTCAATTTCCTCTTTTCATGACAGAAGGCAGAAGTCCGCGCTGGTAATCGGTGAGGGGAAAATACACAACGAGCCCAACAAAAGATACCCATGAGCACAA-------------------------------------TCACCCTGATTTCCCCGGGTCTTTCTTATTATTTGACATCTGttttaagccaaaaaaaaaaaaaaaaaaaaaagaactctgccATCACAGACAGTTTTCAGATCTGATTTGCAACACTCAGACATGACAATTGGGTCTCAGAACAAATTGCAATGATAAAAAAAACGCTGGAAAGAGATCA----------GTCATGT-----GGCACTACCA-------------GCACTTTTGGGTCCAATAGTGTC-GTGGTTtaattctgagaggctgagcccAGGAATTCTGAGGTCATAGG-------------------AGTGCAGTGGATTTGCCTAGTGTTTGGGAAAGACATCTATTGTACATCCCTGCGGGGGTATGTGGTTCCACCAGGCCACCAGGAGGGCTGTGCAGGGCCTGCTG-TCACCAGCTGCCCTC-----AGCTGCCATGGATTTACTGCCCCTCGCACAAAGGGTTTTCTTTGGATGGCCAATTATCCTCTTCCGTCTCC-CTGTGATTTAAGGGTTGAATCTGACATTGTGGGGCATCGTGGATTGAGGTGAGCCTTTACCTCTAATGTTTACAATTCTAAA--AACAGCCTTAAGGAATGATTCAGCGCCATCCTTCCTCAGGGTGCTAAATACCACTGGCCGCAAAGCAAACTAGCCATTTAGGAAAGTGTTCGTATTTGCATG-GTGTCTCTTACTATTTGCATTGTATCAAACTAGCAGAAAGATTCATGCCTCCCATTCCATAT-------TCGTTTAGGACACATCAAACCCTGAGAAAGT-TTCTGGATCTCATTTCTGTAGCCAGGAGC---------TTCTAGGAAGT---CGAGGTCCCCTTAGAATTTAAAACTACTAGAACACCACACCAGCTGTCACTCAGCTACCACATTTGGAAGattttcaaagacaga-aaatttACAAACTCAGCTTAAAATTACCTGACTAGTTGCTTCAAactaccttttttgtttgttttttagtaccggaaattaaactcaggaccttacgcttgccaggaaggcacttgccgctcagctgtatccccagtaaaattacttaaaaagaaaaaaaaaaaaaaaacaaacctaagaGCTGTTGAATTTTAGACAGGgccaaaatttatcattttttttcaaaaaccaacaaaactaaagcaaaaggaatttttttttctgttaaagcTACACAAAGCTTCATCAGgtcaaaatgattattttttttttattggttctgcATCCCT-----TGCCTCCTCCCCAAGCcactttttaaagtaaacaggacttaaaaaataaaaataaacataaaaacaaaaataaacaggacTGCTAAATGTGAACACAGGCCAGTGAGAAGTCAGCCTGGTTGTCCTGGTCCCGGGGTGTGAGGGTGGGGCTGACTTACGGTCATGATGAGCCCCTTTTCCTGGAAGTATTTAACCAGGGGCCCGGCATTCTGCTTGAAGTTGACGAGTCTTCTCTGCGTGGCCTTCAGGTTATCGTCGGGCCGCCCCTGCTGCTCGGCCCTCTTCAGCAGCCGCTCCTTCAGCCTCTGGTTGGCGCAGGTCAGGAAGACCACCAAGTCGGGGGTACAGATCTGTGGGCATCAGACATGCAGA

a score=14303
s chr3           152628141 628 + 160039680 CATAGACATTTAACTGCACTATGTAAGATGAAACATTTCTGCTACCACTGGCTTATATACCTGAGAGTGATGTCTCCATGAGGCACAAGTGAAAATTAGTTCAGGTGTCATGGTGTGACTCCATCGGCAATGCATGCACA-------GACATGTTCTTCAAACTCATTTCACACTAGTTGAATTTGCAATGTTTAGTAGTGGTGAACAAAACTCGCTATTTTTATGAAAATCAAAGAAATTATTTCTGAACACTCTTGATGGCCATTTTCAATGCACCCCTCAGCGATTTCTGGCACGCTAATCTTTGGTTGCTGTCTCATTAATAAGTGGGTAATTTTCCAAGGCTCTGTGAGCCAACGGCTATTCTAAGAACGGTTCTTTCA-GACTGTGCTGGTGCCG-------------AGACTCTCAAGTGTCACTTGGCCCTGGCAGAAGATGCTGTGACCTTGTTCTTTGTGCCCTATGAGAAAGCTCGAGCAGAGGTGTGATTGATCACTCCCTGTAGCAGGGGACCG----ACAGCATTAACTTGCTGCATTTTTCCTTTCTTGTTGTTGGGAA-ATATGAGTTACTTGGG-AAAAACTAATATGAGATTAAAAA----AAAAAAAAACATCTTTCCAAATGTTTTtcctctctgcccc
s HiC_scaffold_1 139438098 630 + 233722169 cATTAGTATTCAAATATGATGCATAAAGTCAAATATTTCTGCCACGATGGGTTTATACAGGTGAGG----TGGTTCCACAAttgacacacaaaaatcagttatAGTCTCAGTCTATCACCATGCagatgatg-gtgaacatttctctAATATGTTC--CAGACTCG------ATTAAGTGCATTTTCAATGCTAACCACTGGTAGCCAAAAGAC----TTTTTGttaaaatcaaa-aagttacttcCTAACATTGCTAATGCCCATTTTTAATGTTCTACTCAGC-ATTTTTGGCTGGCTACCCTTACGTTGCTCTTCCATTGATAAATGGATGATTCCCCAAGGCTCCATAAGCCCACAGCTATGATACGAGTGAGTCTTCCCTAACTGTGCTGGAGCCATTGACTCAAACCCAGGCTTTC-AGTCTCTGTTGGCAGAGGCAGCAGCTGCCTTTGCTGTATCTTTTCTGTTCTG-AAGAAAGCCAGGGCACAGCAGC--CTAATCATTCC------AAGAGGACAGTTTTAAACCATTAATTTAGCGcttcacttttttcttatttttggaaaTGCATGAATGACTTGGGTAGAAACTAATCTGAGCTAGAAAATCTTTCAAAGAGTTCTCTTTCCAAATTTTCATCAGCTATTCCTC

a score=4652
s chr3           152632363 185 + 160039680 ttaaaaaaaaaaCAGAGAGCTTTAAAAGGCTGAACATGCTTCTGCCTTCATAATAGGCCTCTTAGGAAAGTAAACACTCATTGTGATGTGATGTCTGCTGATGAATACATTCTTGAATCTAATTACAGC---AGTGTTCTGGCTGGCAAGTCCTAGTCCTTTGAGTCGAGATTCAATCGTTACTTGTT
s HiC_scaffold_1 139440123 187 + 233722169 ttgaaataagccTAGCAGAACTTAAAACTTTGAATGTGTTTTCTTGTTCAAAATAGGCCACTTGGGGAAGTAAAAATTCCTTATAATATGTTGTCCTCTGTTCAAAAAGGCTTGGGATCTAACTCCAGAGAGGGTGCGCCAGCAGGTAACCCTCAG-CCTCTGAGACCAGACCCAGCCTCTTTCTGCT

a score=33773
s chr3           152639505 1111 + 160039680 cgcacCATTGTCTAAAGCTAGGTTAGAATTGGTGGCAGGGCTTCCTTCTGACTTTCC-AGGTTAAGACCTTTGGAGCCTTGTGTTCCC----------GGTGGACTGTGACATCCTTGAGG-CAGACAGA---TGCCTGAGAGCTGCAGTTGCTCTACCCTCTGGCTGCTTGCGTCTGCCCAACGGGTAAGAACACAGGTA-AGAGCA----CTCAGGTGCTCCTAACCCCAACCACC---ACTGAAGAGCAGCCTTCCTTCCTAGAGAGCCTGAGTGGAAACCCACCAGGCAAACGGTTCTTGGATTATAGCTCCACATAATTAATGCCTGAGGAATGACAGTTAGTGTTCTATGCCACCAAGCTTGGGG-ACAATATGCTAGCTAGCACCCGT----ACTTAATGTGCACAGCA------GACATGAA----GAATGACCTTGATTCGTGGCTACACAGAGTCAGAAGGTTACCTTT-CACGTCACATAGGTTGATTGTAAAAATCCCATCAGCCCTTTAATTTTAATGGACTTATATTGTATCATAACACATGGCAATAAAAATAAGTGAATAATTATCTTCT---AATAGAATTTCAATATCAAAGTCCAATTATTAGATAATTATAAACAGGCTTCTAAGCCATTAGTTCTAGGGGGGAAAGAATCGAGATTTTATTTAATATTTTTCATCGAAGTGCTAATGCTTAGGAAAAATATTGCATAATTAAAATTAAATCACTCCCCCTTAAAAGCAAATCAGATTTGTCCCCCTTAGGAACAGCAAATCAAATTACAAGTCTGTCAAATCAATTCACTGTGCACAAAGGACAACGGCAGCCTTTGG-GGGTTGGTTTCCCTCTAAATCTAAGTT-------TAAAA-------------------AAAACCATATTTATCTAGTTGAGATTTTTTTCCATATATATATCCACAGTCACCCAAACTCAGAACTGGATCTATTTTTAGGCTCCCTTTTAATGGCAAAACTGACAC-TAAATGATTGATGCTATAGGAAGTCACTA----------------GAAGAAAAG-------AAGAAACACTCAGACCGTCATATACATCTGCTCTGGCAGATCTCGCC--TCTTTAACCTACAGTGCATGATGAATAGAGTTC-ACAAGGCTGTGTGCGTTCAGCAGCCATGGTCCTCCTGTGTACAGTT
s HiC_scaffold_1 139451085 1148 + 233722169 CGCAACACTGTTTAAAGCTAGTGTAGCAGAGGTGACAGGGCTTT-TTCTGAGTCTCCTGGGTTAATGACTTTGGAGCCCAGAGGCTCCATGAAGTCTAGCTATTCTGAGACCTCCGTGTGGACAGAAAGAGTCTCCCAAGGGGCCACAGCTGTTCCA-------GCTGTGTGAGTCTTCACAA--ACCAAGCAT-CAGATATACAGCAGATTTCAAGGTGAGCCCAGTC--AACCATTTAGACTGCAA---------CCTCAGCAGAGAACTTGAGTCAAAGCCAACCTGCTCCCCAGTTCTTGATTTCCTATTCCATAGGACACGTGTACAATTATAAACAGTTACTGTTTTAAGTCACTAGGTTTTGGGCATGATTTTTTACATAGCAATAGTGTGAACTTAGTATATAGGGCAAAGTCAGAGATGAATTTAAGATGATCTT---------TTGTACCAAGTATGGAAATTGCCTTTACACGTTACATGGGACCAT-----------CATCAGCCTTTGAAGTTTAATGGCCTTTCCTTGAATTACAACTcactgcaataaaaataaaggaatagtcATCTTCTCCAAACGCATTCTCAATTTCAAAAcctaattattaaataattataagCAAGCTTCTAAGTCATTAGTTCTAAAG---AAAGCATCaacattttctttaatgttttgcaAGAAAGTGCTAATGCTGAGGAAAAATATtgcataattaaaattaaatcactCTCCCTTAGGAGCAAATCAAATACGTCCCCCTTAGGAACAGCAAATCAAATTATAAGTCTGTCAAATCAATTCGGTATGCAAGAAGGATGATGACGGCCCTCGGAGGACTGATCTGCTTTTATCTCTAAGCTATAATgataacaatataataataataataatagaataatatttaTCTAGTTGAGA--TTGCTCCATACTTACAATCTCAG---------ATCAGAACTACGTCTATTTTTAGACTTCTTTTAAATGGCAAAGCTGGGACAAAAATTATAGATGCTAGAGGAAATcacaactacaaaaagaaaaagaaagaaaaggaacaaaaaaggacAC-CAGACACCTACGTACACCTGCTCCAGGAGGTCTCGCCCTCTCTCATTCCAAAGTGCACGAAGGACGGAGTTCTCCAGGGCTGTGT--GTTCCATGACCACCACCCACCCATGGACAATT

a score=16448
s chr3           152647041 1307 + 160039680 TGGGTGAACTCAGACCCCTGCAGGGACTATGTGAAGGAAGATTATATTGACTGGACAGTGTTTCTAAAACTCTACAGCTCAGAAGAGCGAGGCTGTC-ACTGCTCAGGTATAGAAG---TTGCAGTACCTCACCTGAAGGTGCCCCACCTCACCTGAAGACTGACCACTGTGTGACATGAGTGCCTGGGGCTTAGAACCTGCACTCTCAGGAGGAGCTCTCCCAAGACCCATTTTGGAACTCTGGGCCGTTTACACCTCTGGGTTAGTTTCAACTGATCAATTACTACTTCTTCTTCTTCTTTTTTTTTTTCCCTTCAGGCACAGGAAGGGGGAG--GAGGAAGATGGAACCAGGATGTACTAATTAGTGGGCTTCCAAAGGCTTCCTGCCCAGCAGTGT-------TGAATGTTCCTGGACTGCAGCTTCCAGAGCTCGGCAGTGGTTTCCAGCCATTTGTAGAAGCACAAGA------TCTTCAAACAGAGGCTT--AAGGCCAAACTCAGAAGGCAAGCTCAAAGGGGCACTGTTGTGGGCAGCCTTAAGACCTCAAGGATGCCTCTGATGGTTTAATCGGTCAGTTTGAAAAATAGACTGCAGTAGGAATAGAGTCTTT--GCCTTCACAGCCTCTG----ACAGAAGGAGAAGCACTGGCCTTCCCTGCTATAAATCAAAGGGGGGTTGTTTTTGACAGACCCATTAGCAACCATCACACTCTTCTAGAAGAGCCCAGGAGCGAAGGCTGAGCGGAGAACTACAGAGAGTGATTC--TGGTCTCACCCCAT----CCTGTGAGG------TCATCTCGTTCTTCAAAGGAGAACAC-GGGGATCTTGGGGAGTCTGCACATTAATCAGGAAGCACACAGACTAGCAAAGGCAA---------CACTCGCTGA---------------CCACCCCGCTGGTTCACGGGAAGGTCTGAGAAAT-GATTCAAAATTACTTCCTATGTGGTTACTTAAATTGTTCCTTTGTGTGGTATCCAAAGCCCTAGTATTTTGTTTTCCACCCAGAGAGTCA---TCCTTTGTGTAATCGAACCCTCTGAAGCAAAGGAGCATAATGAGTTGGTGAGGCAGGTGTGAGGGTC------TGCAGAAAGGGAGAAGGAAGCAGTCCTTCAGAATGAATGAATAAACTCTGCCTCAAAGAACACGAAAGAGAA---GTCTGTGCCAGAGACA---------AACCACAAACAC--ACAGTAATTCTATCAAGGCCAGCCAAACATGGAGAAGAATAGGTTA-CAAATGGGCAATTTGTCCATAAT---------GCTAAAAGCTGCAAAGGAACATAGCTAAC-ATAACGGCACAAGGTTTTTATATGGAAAACTAGAAAACAGTATTTAACAA
s HiC_scaffold_1 139454811 1254 + 233722169 TGGCTGGCTGCAGGGCCCAGCAGAAGCACACTGAGAGGAGGCCACAGTGAAGGGACCATGACCCCGACTCCTGTCACCTGGGAGGAGTCGGGCTGCCCAGTGATGAGGGATGGAGGGGCCAACAGCTCTTCACAGGAA------CCAAATCAC----------ACCA---------------GCCTGGTGCTCGGCTCGTGCTTCCTCATAATTGGTTCTTCC----CACATTTTGAA------------------TTCAGGATTAGTATCACCT------CTGCT-CTGCTCAgtcttttgttgctgttgttgttaagGAGCAGGGGGAGGGAGCAGAGGATGGAGGAGACGGGATGTGCTAATTAGTGGGCTCCTAAATGCTTTCCACTTAGCAGCTTAGCAGTGTGACTGTCCCTGGACT-CGACTGACAGATCTTTGGAGTGGTTACCAGACACTT-----AGCAACAGAAACCTTTCTGCCAACAAAGGCCTGCATGG---AACCAAGGAACCAAGACAAGAGCAGGGCTGCCCTGGGCAGCTTTTGTCCTGCAAGGTGGCCTCAAAGGGTTTCAGCATCCAG-----AAAACAGCACCCGGAGGGAGTCTTGTCCTTTGGTCTGCAAAGCCTCAgcggaaaaaggagagaagaccTGGACCCTCCCTCCACAGACTGACAG-----TGTT-------GAGTCGTTA---------------TTCTAG------------------------------GCCACAAGTTGTGCTACCATGTTCTCTTCCCATCAGCCCTGGGAGGGGCTATGGACCTCATTCTCCGACCAGGAACACTGAGGCTTGAAGAGGGTTGGTACCTCAGCCACAA---ACACAG---AGTAAATGCGAGTCAGAACCTACTCTATGGAACAGACATTATACCCAGCTCCACCGGTTCACAGGAGGGTCTCAGAAATGGACCCGAGGTTCCTTTTTGCCTGCTTACTCGAATCGTTCCTTGTCTGGATGTCCATGCCACTAATA--CTGATTTGTCACTAGAGA-TCACAGTATGTTGAGAAGTCAACCC------AATAAAGGAGCACTGGAAGTTGTCAGGGAGCATGTGTGGGTCCTGGGGTGCAGTagtgggaagggaagaagaaaggcag---gaaggagTCTGCTCTGCCCTAAAGGGAATAGAACGGAACTGGCCTG---CAGAGATAGGCAAACACACCCATGAGCACAAACAGTCCTTCTGCAGAGATCCCCTGAGCACTGAGAAGAAGGGGTTAGCAAAATGGCAGCTTGTTCACAATAGAAGCAAAACTATAAATTATCTAGGAACAGAGCCAACAAAAATAGTATAAGATTTTTATggggaaaatgataaaactttaTGTAATGA

a score=24259
s chr3           152652736 1036 + 160039680 CTGAACAGCATCTTAAC----ATAGGAAGCCCAGTGCTTCCTGACCCGGCGAAGAGGCCTTC---AGCCGACAAGGATGATGGCGTAGGATGATCCCAGGTTC---ATCCTTGGACACTACTGACTGAGACTTATTTTAAAGAAATTAAACATTAAAAAAAAACAtttttttttgttttttg-----------------gttttttggttttttt------------------tgtttttg---ttttttttttgtttttGGCAGATGATGTTCAATTTTTTAAAGATTTTCCAAGGAAAAAAACCTTTTGCCAACACACACGAATGGATTTGCCCATTTCAGACCAGAATTCA-----------GAAATGT-----TGCCAAGAAATCATTGTTTGTCCTTGTTGTTGTTTAATCCCAAAAATTTAAGTGAAAAGTGAGACATTATTTTTTAATCAGTTAATAAAAATAAGGCTAGGCTATCCCTAAGGTAGAAAGCTTGCCTAACACATGTGGGGTTCTTGTTCTGTATacacacacacacacacacacacacacacacacacacactcacatagatagatagacagatagacagacagacagacagacagacagacagacagatagatagatagatagatagataAAAGAGAGCAGACAGAAGAGAGAAGATAAAAACCATGCTAGGAGATATTCTTACCTGGTCCTCAAAAGACAGAGCCTGGGCAACATCCCTTGGGAATCCATCAATCACAATGCCTTCTTCATCGGGTATTTGCATCAATTTTTGTTTTATCTCCGTAATTGTTGTCTCCTTTAATACA-----AAGATGAAAATCTACAGT--------GTACTCCA--CGCAGGAGCTATTATGTTTTGCACGAGAGAAGGCAGTCATACAGTCGTACCTGTGGGGCCAGCTCCCCATTGGTGATTATCTTGGCGATCAGACTCCATTTTCTGTTGCTGCTGGCACTGTGGATTTTCTTCCTCAATAATTCTCCCACTGAGATGTACTGGAATCCATACCGCTCTGCAATTTTCAAACTCTGAGTACCCTTTCCACTTCCTGGA-CCACCTGGCATTCAAAATAGGCAAACCCATGA
s HiC_scaffold_1 139464797  862 + 233722169 CTGAACTCTATCTTAATCTAGGTAGGAAGTACAGGACTTCATAATTCCATAAAGAGCACTTTCTTAATTGGCAAGATCATAGGTATAGAGTGAT-----GTTTTATATCCCTGGGCATTACTGAGCAAGGGTTATTTTTa-gtaattaaacattaaaaagtgaTCTTAGGTGCAGTATTCTGAAGTAGAGTTTAGAGAGgtttactcatttttttaataaaaataatgaattctatTATTAggtttatttcttcccttttggcAGA-GACAGTCTACATTTTAAGCCTTTGCCAGGGGAATAA-CCCTCTGCCAAcccattctgatacattttcctgTTTCAGACCAgaattcattaagaaaaaaaaaaagtaaatcttcCAAGAAATC------------TCTTATTTTAAACTCTCAAAATTGTAAGCAAAAAGCAGGTCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA----TGTAAGGAAACATTCTTACTTGGTCCTCAAAAGACAGAGCCTGGGCAACATCTCGTGGAAATCCATCAATAACAATTCCTTCCTCATCGGGTATTTGcatcaatttttgttttatctccGTAATCGTTGTTTCCTTTTACAAACAGAAAAGATGGGAAACCACTGTTAAAATCAGTACCCTGGTAACCAGTGCCCACAT-TTTTGTAGGAAAGCCGTAAATCAGGCAGCAGTACCTGCGGCGCCAGCTCTCCGTTCGTAATGATCTTGGCAATGAGGCTCCACTTTCGGTTGCTGCTGGCGCTGTGGATTTTCTTTCTCAATAATTCTCCCACTGAAATGTACTGGAATCCATAGCGTTCCGCGATTTTCAGACTTTGAGTACCTTTTCCACTTCCGGGACCCCCCTATTGGTCAAAACCAGGAAACCCCCGA

a score=27423
s chr3           152655430 943 + 160039680 CACTCATATGAATACCT-CCAATTCATTATTATTTCTTTTTCCTTCTGTGGCTACTAGGGA--AAAATT--ATTTCCCAATTAAAGAGAATACAATCCTCA----TTTAAAAAAGAAAATATCTAGTTGGCTAACTGCATTAAAGTTTAAACGAGGAAAACAGCAGATTCATAAAATCTTGGAGATATTGTTTACAGGTCATCATAGAGAAGTACTATGATGTTTTAATGGGGATTTAAGAATATGAAATAAGTGTTAAAT---AGAATTCTGATTCTGCTTTATTGAAAAGTGTTCTCAAC-TATTTCCATTTGCCATCCCTTGAAGTTTC----TGCTTGTTTGTTATCCCCCCAACTCGACACTTGCAGATATG--CCATCTAATATTGTTTCTGAAACATAAAT-TTCAAACAAAGTTAGCAATCATGGAGAACCATGATGCCTGCTTTCATACCTATGACAAGAATGATTTTGGGCCGAGGTCTAGTCGGGTCAAAAACCTCATATTCTTCTATCAGCTCCGCCGTCTCCGACAGGTCCGTGTCACTCTCTATGGAAAACTGGTGGATTGGAGGGAGCCGGTCATACCGCCGATATGGAAAGTTTGAATTTTCAGGCATGACTGCAAAAGAGTAGGGTAATTTTGAAAAGGAGAAAAAAATAAGCAGAGGGAAGCACTTCTTCACAGTTGACCAGTTAGTACAGAAA-------------------ATTATATCAACTAGC--CAGTCT--CTGAACG--------AAGGCTTCCTTAGTGGTCAG--------TAACTCACACTTTTAGAGCCACATtgtctcatgctcaa--cacccatggtagcatggatatggtcatagacaatacaaaagtgaatgag-gggccagtgtcctagtaaaactttattgatacagatggatggccggactgcgccACC---TGCATTGAGAACGTGTAACCTTCTCCAGCATGGCTTCATTTTACCTCACGGCCTCTGCA
s HiC_scaffold_1 139469533 964 + 233722169 CATTTAAGTGAGTTCCTACCAATG------tatctattttgcttttggtttaaATTGAGAATAAAAACTCAATTTATTGATTTAAAGGGAAACAAAATTCACATGTTTAGCAAACATTTTTTGGACTCAATTATctatattaaagaataaat----aaaaccataGGACAATAAA-TCTTGAAGCAATCACTTGCAATTCATTATAAAGAA----TATAACATTGTAATGGAAATCTATGAAAATGCAGTGAAGATTAAATTACATTATTGTGACT-TACTTTAttgaaaattattctaaaaatagTTCCATGTATTGTCTCCTGAACTTTCATTTCTATTGCTTGTCATTACCC-AACTAAGCACTTGCAAATTTGGTACAAtccacattttt--------ataaatatgtaaataaaactaGCATTGATAGAGAA------TTTCTGTCCTCATACCTATGACAAGAATGATCTTTGGCCGAGGTCTAGCAGGATCGAAAACCTCATACTCCTCGATTAACTCTGCAGTCTCCGAAAGGTCTGTGTCACTCTCTATAGAAAACTGGTGGATGGGAGGGAGCCGATCATATCGCCGATATGGAAAATTTGAATTTTCAGGCATTACTGCAAAAGAGTAAGATaactatgaaaaggaaaaa-----aagcatgaTAAAACA-TCTTCCACATTTAATCAATTAGGATATGAAGTTTAAATGAGTTTGATTTGTTATTTCAAATGGCAGAAGTCTTCTTAAACGGTCAGCAAATTTTTTCCTCAAGAGTCAGACAGACAATATTTTAGGGTCTAAGAGTCACA--GTCTTATATTCAAGTCAGTCATGGTAGCATAAATTCAGCCACAGACAATCCATAAACAGAGGAACATGCTTGTGTCCCAATAAAACTTTGTTAAAACAGACAGTGAGCTGGACTTGGCCACCTCTTGCACTAA-----CGAAACCTTCTCAGACATTTCCTAGTGTTGTTTGGTAGACTGTGTA

a score=6525
s chr3           152658429 684 + 160039680 ACTCCTGTGTGCACGAGGAAAGAAACTTCTCTCTCT-GGAGATGTCTTTGAGGGAATGATATTTCTACTCT-TCTCTTCTTGAGCTTCTTAAATATTAGCACACCATGACTTTTTCCCACACCATATTCAAATAAAATCTAACTGGGGTCACAAAATCCAACTGA-TGTGGCCACACATACC-AAGAGTCGTTTCCTCCTTTTATTTACTGCAAAGAAAGTTTGTTTCGACC-------TCTTGGTGTGGCTGAAACTTTTGTGAGACAATATTTTTAAATtttattttactatttctttatgtgtgtatgtgtgtgtcaggagttgggtggtaggcacatgtaagtgcaggtgtctgtggaggccagaagggggcagtagatcccctgaagctggaaatctaggcaatggtgagcagccagttatgagtgctaggagctgaagctaggtcctctggaagagtaggcagcagtctcaatcactgagccattttttccaaccTTGTTCAACAATTTTTGAACATAATTTAAAATTTGAAAATATACTTGTCTTGGCCACTGCAAAAGAATTAGTTTACCTTCCCCTGATTGGAGCTAATTCTTCA-TTTACAGACTATTATAC-TCATAACTTCATTC----CATGGAGAA------GGCTGAA---TAGCCCATGGTTTTGACAAACACACACTTGA-AAATGAGATTGGA
s HiC_scaffold_1 139473905 459 + 233722169 ACTCCTGCCTG-GCAGGGACAGACTCTCCTCCCTGTCAGAGTTGTTTCTAAGGGAACAgtatttctactttctttctgtttgtgcTTCTTAAACATTAGCATATCATGACTCTTTCCCACACCACATTCaagtaaaatctaaattga-tcacGA-------CTGAATAAGGTTAAACGGACTTAGGATTTGTCTCCTTCCTGGATTTATCTcaaatggaactgtctccaaccCACGTTTTGTTGATAGAGCTGAAACTTTC---------------------------------------------------------------TGAGGTGGTA--------TAAG--------------------AGAAGGG--------------------------------------------------------------------------------------------------------------------------------------------------------TTTAAGTTTCTAAAATGGAATGAGCTTGGCCACTGAAAAAGAATGGATTTAGTTTTCCCTGACTGCATCTGATTCTACATTTTACATACCATTACACTTCACAACTACATCTAGAGCCTGAAAGATCGGTTAGCTCAAGGTGAGCCCATAATTTCAATAAAcacatatttcagaaaaaaaattaga

a score=33854
s chr3           152659916 845 + 160039680 AAATGAGATTAGAAAACTGTGAATCTGCTCCACACACCACAGCTTCCATTTCTCAACTGTTCCTGACAGTCAAC--AGTTTATTTTTGTCTTTG-ACTCAAATGATAAATCCTTTATATTCAATGGTCGCTTAGTGAATCTGTATTAAATTAACCCTGATAAACCATCCATGCACTTATGAAAACACACTAATATGTGCTCTGTACTTGGAAGCAGTATTAGCAAGCCAAGACTCTGACTAATATAAAAGTGTTGAGTTGTTACATAATAACTACTAATTTTATCTGCATTCAACTTGTGTATTTGGGAAAAGCCTATTTGCAATGTTAAAAATACAACCATCATTCTTAAATGTAATTTATGTTGCAAAATAATGAGTTTAGCAATATAAACTTTTATTACATTTACAGAAAATCGCCTGATAATGGTGTGTTGCTTTCTTCTCCGTATCGAGGGTGATTAGAAGTAGTAGCAGGAAAAGATAAATCCTCCCCCAAA--------------CACTTATAAACCTAGTCATGAAAAGCACTCTCTCCAGTCCGCATGGTGTATTTTAAAGAGATTTGCTCTCCAGTGAGATGCCCATCATCCCGCACACACATTACCATTTCGGAGGAAGGATCTCCGTGATTGTCCTCCATTTAGGGGCGGTAACGTCTTCTTTTCCTGGCTGACAAATGTGTCCCACTTCACCTTGTCACAGCCTCCTAGCTCCTTGACTTTCTGTAAACAAGTTTCCAAGTACTCTATGGGGTCTTCTGGCTTGGAACACATCAAGCCATTGAGCAGGCTCTGAAATACATATGTAAAAAA-GTAAAAATGAAATCTATTTTGACACCAtgtcctagttt
s HiC_scaffold_1 139474351 836 + 233722169 aaaaaaaattagaacagcATGAATCTTCTCCA------------GTTGTTCTAAAAGTCTTCCTAAAATTTAAAcaagttcatttcttttatagCACCCCATTGCCTAATCTATCATAGTCAAGAGCTGCTTAATAAATCTTTGA-AAATTAGCTAGTGTATACTTTATATGCATTTATGCAGACTTATTAATATGAATTTTGGGCTTGGACACATTAATAACAGG---AATCTCTAGCTAATg-aaaactgttgaattgttatgtAATAGTTATCAATTTTATCTGGGCTCTACTCATGTATTTGG-AAAAGCCGATTtgcaat-ttaaaagtaaattcaaGGTTGTTAA-TGTAATTCATTTCACAAAATAATGAAGTcagtaatataaaatttcattaagtCTTTAGCAAACTGCCAGACAATGGTACATAATTTTGTTTGTCTTATGGAGG-TGATTAGAATGAGTAGCAGAAAGAGATTAATCATAGTCCAAGGACTCATAATTTCCCATTTATAACCCTAATAAATTAAATCACAGTCTGTAGCCTCCGTGGTGTGTTTTAAAGAGAACTCCTCTGC--CTAGAAGCCTATCATTCTGTATATACATTACCATTTCTCAGAAAGGATCTCCGTGACTGCCCCCCATTTAGTGGCGGTAAGGTCTTCTTTTCCTGGCTGACAAATGTGTCCCACTTCACCTTGTCACAGCCACCTAGTTCCTTTACTTTCTGTAAACAACTTTCCAAGTACTCCACTGGATCTTCAGGTTTAGAACACATCAGTCCATTCAAAAGGCTCTGAAATACA---ACAAAACATGCACAAgtgaaatatgtttttaaaac-tgtctttgctT

a score=9783
s chr3           152672637 613 + 160039680 TTCCATTGCTCACT-TCTGTTTTTCAGTAGATATTATTTT-GTATT-----GGAGTCAC--------AATCAC-----AAGCAT------TATAGCAGCAAACTTA---CACTGGGGGTTTCCAA------------CTGTTTA-ATGCTCTTTTCTGC-TCGAAAGGTTGTGTAGGAAG----GATACCATCTCTAATCATTAAATATCTG-CGTGCTGAATTTC-TCATGTGTAGTGCTGAAAATATGTCTTC--------TAATCTATTTCCTTCACTAACTCATAACCCATTGGATCATTTAAGTCTGTGAGAAGTTTGGAAGCTTTTTATCCCCTAGAAAAAGCACTAAACA-GGAAGACCT--ACTTCCACACTTTTGCATACACTGTTTTGATAAGTAAGCTCCT-----GGTTAGCAAGCAGTCTCTCTACAGGGTGTCTTTAATTTTTGTGGTCATTGAGATGTATGTGTTCATTTCTTAAATTTGGGATGAACGCAGGACTATGTAATAGTGTGTGACA---CTCTTCAGCCAAAGAGAAATTTCACTATGTTCTCTTTCTTCC--------CTACACAG------------ACTGGACACTTACATTCTATATTTCAAAGATCACCAGGAATTCTCAGGTTAGGGTTTAAAAGACTGGAACGT--CTCATGGTGTCTGAAAGAATTAAGAAA
s HiC_scaffold_1 139483735 680 + 233722169 ttctcgtTCTCATTCTCCTTCTTCTAACAGATGTCATTTTTGTATTTGGGGGGAAACGCGTTATTCAAATCaccaaaaaagcataaaatgtgtAGTAACAAATTCATCCCACTGGAT-TTTCCAatcactctgtcttctgtttgcAAGTTCTTGCTTGAGTCAAGAGGTTGTACTGGAAACTAATACACCATTCCCCTTTATTTAACTTCTGGagtgttgaattttatcataGAAAGCA--------ATGTCTTTCTCTGAATTGCTCTATTTCCTTTACTAAGTTAAAACCCATTGGATCATTAGTGTCTGTGGGAAATCTGGAAGCATTTTGTGC----AGAAAAACACTAAATGTGTAAGACTTTCccttccatgtgtttatgtattcCGTCTCTATATCTGTGCCCCTCACAAGTTTTACAAGTAATCTTGTTAGGAAGTCTTTTGGCGGCCTTTGTTTATTTA---ATGTATACTCTAGTCTGAAATCTGGGGTAGAC-TGGGA-----TATTGGTGTGTAACACAGCTGTTCAGCCTGAGAGAAATTTCCTGGTATTCTAGTTTGCTCACCATCTACTGGGCAGGTGTTTAGCTTAGTTAGACACTGACATGCTG-AACTCAGAAACCATTAGGAGTTTTGGGGAACTGGGTTAAGAATGTGAAAGCTCGCTTAAAACATTTGGAAGGATTAGGAAA

a score=11721
s chr3           152676033 462 + 160039680 ATTGTTGCATTTGGAGTCAACATTGTACTGTATATACATTATATTGTGGGCCATAACCGGTTTCCAGTTTCTTCTCTCACTGGTTCTGGGCTCCTCACATGCAGGGATCATGCCCTAGAATTCTTTATATTTCT-GTGTTTTGGACAATGACTATCCCCAAATAGGCACACATGGGTGGAGGAATGAAAATCCTATATCTATAGCTATTACATCTGTAGCTATACTATAATAAGATGCTTAAGAGA-CAGTCAAAGGAATTTATAATTT-----------------ATGAATGTTCTATTATCCTTTAAATGAAACATATT------GACACTGTTTTAAATCACAGCATGACGGCTTGA----ATTAA--CCCCTTAT-ATAAATTCTAAATTATCTCACAG--GACTATCTTTAGGTGCTAAGAGAATTTAGCTCTAACAGTGGCTTTATAATATCCAGAAATTCAATAGTTTATAAGTACACAACTGAGTTAC
s HiC_scaffold_1 139488092 468 + 233722169 ATTATTGCATTTAGAATCAACTTGCTGCTATCCACATTCCATGATATTaggaaaaatttgtttatagCTTAATTTCTCACTGGTTCTGAGCTCTTC-CAAGGAGGGATGATGTCCTAGAAATCTTTACATTCCTAGTGATTTGGACAGTTCCCATCCTAAAATAGATACCTGTGACAGCAGGAATGAAATATCTGCATTTGTG---------TCTGCAGAC--------------TGCTTAAAAACTCAGAGCAAGTAATTTAGAACGTTATTGTAGTAGGAAGAAgtaaatattctaatattttta----gaaacagaTTATGTATGAAACCTTTTAAAAGTACACCACAATGACTTGAGAAAATTAATGCCACTAATTAGGAGTCCTGATTTACCTTATGGCTATGTATTTTTAGGTGCTGAGAAAACCTAGCTCAAGTAATGTCTTCATAGTGCGTAGAAATACAATGGTCCTTGAATACTCAACTAAGCCAC

a score=17453
s chr3           152676702 1380 + 160039680 GCCTAGGAGTCTGAAG-TGCTATCCCACACACCTGCATCAGAAGCAGCAGATCTTTCCGAGGGTTGACCCTGCCTTATTTTTATGTCTTTACCTTGTGGCTCATGAACAATGCATTAGTAATGCACACGTTAGTC-TCCAGGGATGAGAAAGTCAGACCCTTAGCATCCAAGGAATAGAATGTGATGTTTCTCAGCAGTCGCAAGTCAGTCACGTTGGTGTGCTAGAATTTTTAAAAAA--------TTACCAGAAATCTACCATCTGCTCCTGTTTTTATCTCATCTTTCCAGCCACGTTTCTTCTGTTAATTGTCATTCTGCAGTATAATTAATTAATTTCCATGCTGCTTCTAACTGGGTGAAATTACAAGACTAAGGATCGACCACATCTCTGCAAGCAGTGAGCGTGCTTAAGGAGAGCTCTTCCCAGGTAAGTCAGCTCTGccacagaggccagaagacagtgtcaggacctctagagttggagctatgggtgactgtgctctgctgctgacttgcgtggatcatgggatcttaattcttgactctagaagagaagcaaaagctcttaag----tgct-gagtcatctcttaggtcccTTGTGT-AAAGGTTTGAGTG----CCATCACATGCAA-gtcccacatggtac-------ccattgt--ctatctgcatttaaatttaatatagttaaatgcagctaaatttaaatccaatcagaattttaatttctttgctgaatgagccgcagtgcaaatactcaatagccacgtgtgcccagtggctgccagatGTGCCCAGTGGCTGCCGCATTGCACAGGTATAGAGCACGCCGTTACTGTACTAAGACCTAGTAGGTCTGTATAGAGAACAAATTGCCAATATCATTGCATAGAGCTCCAGGCATTCCATGGTTGCATCCCAGCTTACTCTGTACATATATCTTCCACTGTTGCTCACACATGAGCTGTGTGCCCTGAATTTCTTTGTGTGTTTCTGAGCTTCACGTTGATTCTCTCAGTTAAAATTCAATCCCCC---TTTAAAAAAAAATCAATCCCCTTCTTTC-TTTTCCACTCAGTAAAATATTCCTGAACCACTGAGGCCCCATTTGGAG-----AAAG----TGCCATAAAAGCCATTG-----AGCCTTAATGGGCTTAATTACTTTCTCCTTCAGCcctgt-----------ctcctgcctgtctcctgcct------------TGTACCTTT-----TG-ACCATCTATCGGGCCTTCAAATGTGTCTCCGTGGGTGTATCCCT-ATGCAGCTTGCCATAGTGCTGTGTGTATAATAAATACTCT---AAGACGACTTTAGGAATT----------TCAAATATGAGGTCTATCTTATGAATAGCTATAGTTCCATTGCTTGATGTGCACTGAGTATTAAAATTTACTTGATTCATTGATTTCTAGAATTAT
s HiC_scaffold_1 139489955 1103 + 233722169 GTTTACAGATCTGAAACTGCTAAACCACAAG--TGTGTCAGAGTCAGCAAGCCCTTTTGGGTGATcaaattac-ttatttttctgtttttgctataTGTCTCATGAACAGTGTTTTAGTAATACATGCATTAATCAGCCTAGGATGAGTAAGACATAATCTTTCTATCCAAggaataaaatgtgttgtttctCAA-AGTCACATGTCATTCATGTTAGTgggctagaatttttttttaaatttttttttaccagaa-ttTACCATCTGCTCCTGTTTTTATCTAGTTTGTTTAACCATGTTTCTCCTGCTAATTGTTCTTCTGCAATATAATTAATTAACTCTGATTGTTTTTATGGCTAGATGAAATCATAAAACTAATGACCTAGGGAAGCCACACAAGCAGTGA------CTAAAGGGAACTCTTCCC--------CAACTC--------------------------------------------------------------------------------AATCATCGG--------TTTTGATT----GGGAGAAGGAAACTACCGTAAAGCATTGCTCGAATCATGTCACTG-----TTGTGTCAAAATTTTGAATGGCTACCATTGTTTTCACTGTTCACTGTGGTACCTGCTAGCCACTGTgactatttacatttaaataca----------------tttgatttaaataaaatgaaaaccttaATTCCTTACCAGAATGAGGCACATTTCAAGGACTTGATGGCA-----------------------------------------------------ATACAGCA------------------------------------------------------------------------------------------------------------------------------------------TGTGTGCT------------------------------------TTTTTTTAGTCAATATTTGATTCCCTTGGTTTA---------TAATTAGCTTCCTCCGTTTTCTACTTAGTGAAGTAGTTCCAAACTTTCAAGGTCCAACTACGGGCCTCAAAAGGTTTCTCCATGAAAGCCATTGTTACTCACCCTAATGGATTTAAGTGCTTTCTTCCGTTATCCTCTCCAGAATATTACTTGTTCCTCTATCCTGCATGCAGCTTATGTGTGGACCTTTGTTTCTGTACTGTTCCCCAGTTCCTGAAATGTATCTTCATGGTTGAACCAATAATGGAGTTTATCATGACGTCATGCACAAAATAAATGTTCTCAAAGGATGGGCTGAGAAATTTAAAGTAAACTTAAATATTACTTCTATTTTGGGACCATTTGTAGCCGCGTTGCTTGATGTGCTCTGAAGTTTTATACTTATTTGCTCTATTAGCTTTTAGGATTAT

a score=35261
s chr3           152696913 3879 + 160039680 [encoded data, 4183 characters]
s HiC_scaffold_1 139517278 3478 + 233722169 [encoded data, 4183 characters]

a score=20433
s chr3           152709828 953 + 160039680 AAGATTTCTGAGACTTGCAAAGGACATTTAATAAATAAAAAAATGTACAGTGAAATAAAAAAACAATTAAGAAAAACACATTGCATTTGTAGGGATCTCTCAGTTCAAGAAGAACTGAATCTCCCGTCAGTCAGCTTCGTGTGAAGATAACTAGAGGCTTCTGGGTTGACATGAGAGGATTTTAACAACCTTCCGATTGCTAAAGAGTTTGACATGACTTTATGTCCAGGTCATGATGGCATTTTAATAGCAGCACAAGGTTTTCAAACAGGAGACACTGAAGGGCAGTTGCTCTCCTTTGGC--------------ACTAGAGGCCAGTCTGCAGCTAATTAGCAGGTCAT-AGGTGGAAGTGGACTGTGGCAGAACAACAAAACATTGTTGTTAT-CAGTTCACTGAACAGATGGAAGAAAGGCATTTCAAGTCAAGCCAAA-TGGAGCTGAAGGTGACACAGTATCAAAATTAGACTGA--AACTGGTGCAGATGCACTGGAACCCAGGTC-------TGCTTTAATTATCCTTTTCTGTTCGCATCTTATTCTATTCATACAATTTCCCTTTAGTAAATTTAACCCTGCTCAAAGAAATATGTTAGCTGTTAGATATGACATGATTTAGCCAAATACTTTGGACTTTGGTTGTCATAGCAAATAAATTTTCCTGTGGCAATTAAACTATAGGGTGCAAAGCACATTGGAGGAATCTCAGAGATTGTGATTGGCCCAGATTAAACTCATCTTTTCCACACACATTATTTTCTAACATTTATGTGGTAGTCACAAAAGTATTTTTAATAGATGTATGTGCATTTGTCTTCCAAGTTGCTTCAGGTAAACATTTACCCCAGACTTTA-------------------CCCACTCTACTTCATGTGGTCTCTGTGCTTGAAAGAATGGTAGTATGATGTATTCATTGGGATAGAGTAGATATCCAAAAGGTCTTTTGAATAGCTGGTCTTCTCTTgatc
s HiC_scaffold_1 139538857 884 + 233722169 AAGGTTTTGAAGGATCTCACAACATCTTTAATCAAATTCTCAATGTCCAGCTGAATcaaaat-caattaaacaaaatCAGTTGCACTTGTACCAAATTCTTAGCTCATGGAACAGTGAACTTTCTACGAAATAGCTTTGTATCAATACAACTAGTGGCTTCTTGATTGACATGGGAGA----CAGCAGGCTTTGAATTGTATAAGCATTTGACATGACTTTATGTCCAAATCATTATGGCGTTCTAATTTCATCCCAGGATTCATAAAT-TGAGACTTTCA--gataattgttctattttttccttgaagCAAATTTATTAAGGGTTAGTCTGAAGCTAATTAAAAGGTCATGAGGTGGAAGCAGATTTCTGCAGAGTAAT----TACCGTTGTTAAATGGCCCTCTGA-----TAGGAGGGAAGTATTTCAGTCTGAGTTAAAATGGTATTCAAGGGAATCCAACATCAAAATCAGAACTATGGAATGATACAAATGCACTGAAATGACAGTTACTGccttattttaactatt-tttcctACTTGTGttttattatacattta-aatttgctCTTACTGAATTTAATCTTGCCCAAAGAAATATTGTGGCTATTAGGTATGAAATCCTTAAATCATCTACATTGTGTTCTGATTGGCTTAGCAAACAGCCTTGCCTGTACCATGTAAGCTGT-------------------------------------------------------------------------------------ATATATTTAGTGA----AAAGGTATTTATAGTAGGTTTATGCGAGCTTTTCTTTCAAATTGCTTTGGGTAAATATTTACAACAGATTTCACTTGTATATAAACTGTAACCTCGATCTATTTCCTGTGGTCCCTAGGTTTATAAAAA-GGCACTAT----CAGTCAGTGGTACAGGCCAGATAACCAGAAGATATCCTT-ATAATTGTCCTCTCTCTGACC

a score=11857
s chr3           152714073 393 + 160039680 GCGCTGCTTTACGGCACTCGCCCCGCCCCTTTGCTCTTCGGGGCGTGAGAAGCCGGCAAACATGGCGGCCCCCTGCTTCCTCACTCTGCGGGTGGCTACCCTGGCCGCCTTGGCGCTCTTGTCTCTCGGCAGCTCTGCCGCTGGACACATCGAGGTAGGCATCGGTGTCTGTTGAGGACCGACCCCAGGGAGGACCG------TGTGACTGTGAGCG---CCTCAGGTGCAGGACGCACGGCCCCTGAGGGCAGCCGCCTGCAG-CGTCTTCCCTCCCCGGGCTGTGTTGTGGGATTCAGGACCGTCCGTCCTGAGGACAGGGACCGGACACAGCCTTTTAGAACGCCCTGTTAAGAGTGCGAAGCCAGCGGTGACGAGGGAGGAGGACCCGGTCCTCTGCTC
s HiC_scaffold_1 139543651 390 + 233722169 GTACTGCTTTACGGCACTCACCCCCCTCCAGG----TGCCGGAAGTCTGAAGCCGGCAAACATGGCTGCCACCTATGTCCTCAAACACTCAGCGACGACCCTGGCAGCGTTCTTGTTCTTGTCTTTCGTCAGCTCGGCCGCTAGTCACATCGAGGTAGGAGTCAGATTGTTTTGACGACTGAGTCCTGGGAGGACGGCTGTGTCGTGCCTGTGGGCAGTCCAGCAGATGTCAGATGCACAGCACCGGAGGGACGCCTCCTGCAGTCGTCAGTCTGACTCCGGCTGTGCTGTGGG----AAGTGTGTCTTTCATATGGGTCGG--TCTGCTTCAGCCTTTAAAAAGGACTAATTAAAAGAGGCAAATCTTCGGAGTC---CGAGGAGGACCTGATCTGTTGCCC

a score=12545
s chr3           152716961 1950 + 160039680 GAGTCCTAAATGTTGTTTACCCCTCTTTAATTCTGGAAAATCGTATGTTTTCATAAAATGTGTGTATGTGTGAATGGTCTTGTCTTTATCTGACCCACAGGATCAAGCCGAACAGTTCTTTAGAAGTGGACACACAAATAACTGGGCTGTTTTGGTAAGTATGCTCTTCAAACATATATCTTGGTGCTCACGTTAGATATGTATCTAAACAGTTTTGTGAATTGTGaattaaatttttaaaaataaaatttatCCCTTAAAATAAGAATTTTGATAGAAAAAGAAAGCCCTCCCCCCTCTATCTTTTCTCCCTTTCCCCCTCTCTCCCCCTCCATCTTGtctccctttcccctccctccccctccctctatctattctccctttccccctccctccatctcttctccctttccaactccctccccctccctctatctcttctccctttccccctccctccatctcttctccctttccaactccctgcccctccctctatctcttctccctttcccccctccctcttccTCCCCCACCCCACTttgt-ctctctctga--agaggggacttgtgtagcccaggctggtt-cagactca----ctgtgcagctgaggctg-------gccttgaactgctggcc-cccttgcctctacccctggtgtgctgggtttacaggtgtggccactaTAGAAAAAGCAGCAACTCttttttttttttttttttaaactttattttaaattGACAACAGCTACTAATATTTCTTACTTTAAAATCTTCTGCCAAGTGGTGATTTGTAAATAAATACAAGAATATATTTGAGGTGCTGTCATTACAAAAAACA-------------------------------------------------CTTAC-------AAATACAGAATTATTTTAATGCTTGAAGTGAGTAATTATGTTTCT--CTG-TAGTACTAGTTTATAGATAA-CTATACTTATGCTGTCTTATTGATTTTTATGTTTGCAAG---AAGTGATAGTTGTAGAAAATTCAAATCATGCAGAAAGGTGTAAGAGAAGAAAAGACAAATTGCCTGTGTGACTTTTACGTCAGCTACAAGGGAGGGAA--GTTTTCCCGCTCCACATTCCAGAGTCAGTA-TCTGGGGAAGCCGCTCTCTCTCCACAGAGCCTAGAGCTGTTCTGTGTATTTGTGCATATGTGTCTCTCACACTGGGACTGTCTTCAGTCAGTTCTGCTGCATTGCCTTACCTACTGTGCCGAGGATCTTTCCTCATTGGTGGATATGTAGGTTTCTGGTGTTTTCCAAATGCTGTAAGGGTCTCTGTGTTGGGACTCATTGTATCATTCAGTTCCTGGATGCTGAG-ATCCTAAGTTGGTTATTTTGTTCAGAGTTATGTTGGACATTCTGtttgacattgaggctctcactctgtagcccaggctgacccccgatgcatagcagtccggttccagcttcctcaaagctgggaatgccagcagcagcacct-cacctacctggctGTTCTTAAGTTTGTGAACCTGACTTTTCCCCTCAGGACGGCAATTCGTGGCGTTGGAGCTGCGGGACATGCTGTCCCAGGAGGCTGCGCTTCTTGTTCTGAGCCCAGCTC----TTACTTCATTAGCTTTTCCTGTGTGACTGCTGCACAAGAAATCAG---TGTGTGACTTCCCACAATTTCATTCCTGAGCATGGTTTGCTTACTGGCCTAGTG---------TTTTCTCTACTTTA--CATTTCCCTGCATGGTGTGAATTTATATCTTTAATATAATCTGGATCATGAGTTTGTGTTTGTCATTCCCCAAATAGAATGCACATAAGTTCACTTTTCCTGTATGTGGATCATTTTTACCACCAGAGTTCCATGTAATGGCCTC----TGGTTAGGAGAAAGGCTGAGTCTGCTTCAGGAAAAG-----ACAAAGGTTGTAGACGGTTCT----------------------GAaaaaaatctgccattgggt-gcatatgaagaacacagttctgtttcacttccatctctggaggctggaaagtc
s HiC_scaffold_1 139547555 1647 + 233722169 GAATCTATATTgttctttatc-----tttattttgggAAATTGTGGCTTTT-----------------TCttaatcattttgcttttatttggttGACAGGATCAAGCAGAACAATTTTTTAGAAGTGGCCATACAAACAACTGGGCTGTTTTGGTAAGTACATTCTGTAAAGATTCATCTTGCTGCTCA--TTCAATACGTATCTGGAGATTTTTA-----TGtgactaaaatatttgaaaataaaatttgttttctta------tattttaacagaaa--------------ttctttatttt----------------------------ggtttggcTATCTTT-----------------------------------------TAAATTGATCAcatcaaagaataaaatt--------ttaataatatttctt----------------------------------------------gCCCTTCATTTATCTTT-----------------------------------CAAGTGGTGATCTCTATAAATataagagccaggtgtggtggtgcatggttgtaatcccagcacttgggaggctgaggtaggatgactgccatgagtttgaggccatcctgggctacatc---------atgagttca------tggcaagcctggactacatagca----------------------agaccctgcctcaaa------------accaaaa----------taaaa--------caaaacaaaacatataagtAAACATAACAATCAATTAGGGGTACTGCTGTTAAAGAAAGCATGTTATGAAATGTAGAATTATTTAGTGCTGTCAGTGATTACTTATCTATCTTACTCACATAAAATGTAGAATTA-TTTAATACTTTCAGTGAGTAATTATGTATCTTACTGATAATCCTAGTTTATAAATGCTTTCTATTTAGgctgatatatatttttttctgtttataaaaataaattataattgtagaaaattcaaatta---atagTGTTTTAAAAG-----AAGACAGAT--------TGAATTTcacctcaattaaaaaaaatggaaatgtctTAAAGTCTTACATTCTAGAGCCCATACTTTGATGAGTGCTATCTCTCTTCATATGAACAAGAAA---GTTATAAAGTTAGATACATGGTTTGTTCACTTTAG----ATCATTACACCTGCTTTTTACACTGCCTTAA--GGTATCTTGAGATTCTTTTGCTACTAGTAGTTATGCAGGTATATACTATTTTCTACATGCTGTA----TTTCTATATTATGAAT---------ATGCAGT--ATGGAATCTAAACATCGTA------TTATTTTAGTCACAACTGTGTTGAATGTTCTTATATACATT-----------TTTGTGACCTTGACTGACTTCC-------------------------TCTTTAA---------------TAGAAGTTCCTACACATAAAAATATG-----AAGTCATGGAACCTGA--TCACCATCCAGAATGaccat---------------------------------------------ttctttttctagatcCAAGTCAacaatatattattaatttttc----atgatttctaggcaacaacttaaatttattttagtttacattGTTGTGAGCCTAA----GATTTGCTTATTGgcctattgcttttttttttttttctaatttgaccTTTTTCTCTCTCAGCATGAATTAACATCTTTAATTTGTCTAGATtcacacagttttatttttcatttttcaagtagAATACATATTA-TCAACTTATTTTGGGTG----ATAGTTTCACTGCTAGGGTTCTAGTTGATGATATTTACATGATTAGAAGCTAGAATAAGTTCAACTCAatgaaaaaatgtacagaaaGGGTTGGCTGTCTTACTGTGTTTTCTATGACTGCCAGCATGATACCTGAGCCTGGGTCATATGTGAAGAACAGAGGTTTCTTTGGCTCCCATTTCTGGAGGTGAGGAGGCC

a score=24950
s chr3           152722102 2016 + 160039680 caaaacaacaacaataacaaaGAAACATATTTCCTACCAC-AGGGTAGCTAGTCT------------------GAGATTACAAATGTTTTCTCTGAT-CTAAAGAATCGAATCTTTTAGAAAGAAGGACGCTACAGATGTGCAGAAATGGAGTTGAGCTGTGTTGGGTTGGTATTTGTTTACATTCTGTGTGGAC-TGCTTTCTCCTCAGCTGGGTAATCTTATTTAATATCAGTTGT---AAGAGCCTTTCTTTAGGGAGATTGGTTTTATTGAAAGTT-----TTTTATGTTCTTTGATGTTACTAAGTCTGAAATGCTTTCTTCAGGCATTTCCACAT-AGACTTGAAGTGCGGTAATTCTGAAATCC------GTGCTTTGACTCATAAAA-CCATGTTTTTGTTTTAC--CTCTAGGTGTGCACATCCCGATTCTGGTTTAACTACCGACATGTTGCAAATACTCTTTCTGTTTATAGAAGCGTCAAGAGGCTAGGTATCCCGGACAGGTAAGCCATCTCAGCTGAGTTTAATTTAAAACCCTGTGAAGACAGCTCTTAACTGAGTTGAT--TTGGAAAGAGGTAAAGAGCCCTGATTCTCAGTTTTTGTTGTGGGACATACCATCACGTATGGCGTAGATGTTAACTTAGGGCCACAGTGCACATGAGAGCAATGAGCACTAAGGTAAGAGGATTTGGTAAGCTCTGGGTATCTCCTGTGGTTTATTAGGCGCTTTCCTTGGAGTTTTTTAATAGGTTACTAT-------TTTAAGCAGAAAAAGGACTGATTCTAAACATGTTGATTTATTCATCAGGTTCTGGGGAGTGCTGTAGCCTTAGCTAAGCAGGAACAGGAAA-GCAGATAGTAG--AATGGGAAACTAAAAATCATGGCATGAGCCCAGCCTGGTGACAGGTGCCATGCTGCAGGCTGCTGAAGCTGGGCTCTGTGCTGCACAGTGGCCGGGATGTCTAGAGCTACTTTGTGTTGCTACTGCCTCCTGCTGCCCAGAGCCAACCCTGGCACCCTCAGCTTCTTACTGCTTCT--------TCTAGTACCT-GTTGGAATGCCATGCTGG-------TAGGAGAAT--------------------------------ATAGGTTTGCAGTCGAGTCAATGC-----TGCAGAA-----------TGCCTGGAAGGACGAGTGAATGGGTGAAGGTCCC-------AGACCATGGAATTGGGATTATTACAGCGAGTTTGCTTCTGCTGCAACCACAGAAGGCACAGTTGTCTCAGTTGACGGTTGATTGATTCACTCATTGCCCTCATGGGAGGAGATTGTTCCATGAGCTTGCTAGTGAGACAAGAGTTTGAAACCTGGCTTTTGCGATGATTTTGGTT--GTGACTTCAAAGGCTCAGTA----------CCTGTGACATAGTGCTAATGTAATGGGACCATTGTAGGAATCAAGCC-------AGGAAGCAGAGGTA--AATAAGGTGCTGCCGAGGC--AGAGGACACAGTGCACGGCTTGGGGGTCAGAGGCGCTGTGTTCTACTTAGCAGATGGTTTCAGTCTTAGAAAAGCACAAA----------------------------------------------------------------------------------------CACACAGCTCTGTCCATACTCC-------------------------ATCTCACCTCGGAATCAAAGCAAGCACATGCTATTAGTTACTGCTTCAGTAGTGGCATCTAAGTCTGCG-GAGGAGGGGACCTGTCAGGTAT---------GCAGGTGGACTTCTCTCTTGCTGTCTGTCAGTGCGCCCTTCG--CAGGCAC-----ACTTTGGTTTATAGCTTTGCCCTCTGT-CCGTCCAGAGA-------------CTTGACAGTAG-TTTTATTTGGAAGCGAATGGAATCGTGCTGTTGTG----AGTCGTTAGGACACCCTGCTCTGGCCTGAGGAGATTTGGAGGGTCG-CTGAGAAGCAGAAGGCAGTGACAGCATGTGCTGGTGTGTATGCTGAGTTTATTAAGTTTGCGCTTGAGGTTCTGAAGGGTTTCTTTTGA---GGTGATTTCTATTTCAGATGCTTGTTTGTGGCTTTGATT-ATACAGCCTTTGTTCTAG-ACGTGAATTGGGGGATTCTGACCATAAGAATCTCATACTGCTTATTTTTTTAACAAAGAGAAATTAACAACAACAACAAAAGAGATGGTTTTGCTGTTAGTTTAGTATGGGAAAT
s HiC_scaffold_1 139551420 2146 + 233722169 CACAACTAAGAAAACAAGAGTGAAATGAGTATTCCATAACGAAAGCAGCTAGTTTTCTTCTCAGTTCTGTAAAGAGATTATGGGCATTGTCTTTGATTCTAAAGAATATAATCTTTTAGATATAGGAGCATTATAGAACCACAGAAATTGAGAATAACTAAACTGGTTCAGTATTTGATTAAATTCCCCCCAAATGTGTTTTCTCCGAAGGTGG----CCTTTTGTAATATTAGTTATTATGAAGGCTTCTCTTTACAGAGCTTGGTTTTATTGATAGTTAAAAACTTTATGTTTTTTGCTGTT-TTAAGCTTGAAAC----TCTGAAGAAATTTCTAtgtcatatttaaagaaaaataattctgtaacTTCATGGAATGTTTTGACctataaaaatcatatatttgttttcatactttagGTTTGTACGTCCCGATTCTGGTTTAATTATCGACATGTTGCAAATACTCTTTCTGTTTATAGAAGTGTCAAGAGGCTGGGTATTCCTGACAGGTAAGAAATCTTAATCAGGTTTTAGTTTGAATC----------------TCAGTAAGCTGATCATTGGA-----------------------TAGCTATTATTATAT------TTATCACTTAAGACCATAATGAGAGCTTA-----------TATAAAAGAACAATCAATACTGAGgtaaaaacatttgataaa-gcTTGTTACCT------ATTTATTAAATGCCTTACT----ATTTTTAACTGCAGCAGTATAGGACAATTCCAGTATAAGAGGGTCTTATGGAAAGCCTGTTGATTGCGTCTTCAAATTCCAGGGAGGGCTGTGACCT----TGAAATGAAACAAGAAACCCCGACAGCAGAAAACACGTAGCT-AGAATCATAACATAAAACCAGTGTGCTGACCAGTA--ATGCTGCTGCCACCT--------GCTTTTTGC--CACTGCTGCC------TTTAGAAGT--TTAATGTTGCTGCTTCGTCCTGCTATCTGAATTCAGCTTTTGCTGTTCGGATTTTGTACTGTTGCTAGTTTTTATGGAGTCCTTGGTGGGGATGTCATAGTGGCACAGCCTAGGTGAAGTGCCCATGTGGATGCTGCAAGTAATTGGAAGAATAAGCAGACGGTCTTGTCAGTGTCTGTATGTGGAGGTGAGCTCTGCCATCTAGGAAGATGAATAAAGAGGGAAATTGCCCACTTAGAAGTTCAGATACTAGGTAGCACCCCGCCACCTCCATCTCCGCCCAGATCACGTCCTTTACATTTGGCTTA-TGTATGAGAGATTGATTT-----TTGCTGCTACCGAAGAGCTTTGT---------------ATGGGAGATGAGTTTGAAATGTGCCTTTAATGGTGACTTTGGGCAAATCACTTCACCGCATAAGCATGCTTTCCCCTCTATGGCGTGGTCC-------------CCTTCGCAGGATTCAGATTTGTGCAGTGAAAACAGAGATATGAATAAAATGTTGCAGGAATTGAAAGGAAGCAGTGTGTGACCCAGGA---AAAGTCTATGTA--------AATAGGTCATTTTGGCCTAAGAAATTGacaaaactataatttttttttttgtctttttcctttttatccgtaccagggatcgaattcacgactgcttgcttgcaaggcaggcgcttatgccgcagagctaaatccccagcccaacaaaactATAATTTAGTGCCTGAATTTCATGTAGAAATTAGGGCAGCTagataata----tttctatttaagaAATTACATTGCATTCAGTGTGAGAAAGAGATTGATTTGTTGTACTGAAGAAACAGGTGTAAT----TTTGGCCATTT-TCAGTTGGTCCTAGGTCTAGGTGCTTAGTCCTTTGTTCCTTGACTGTGTCCTGTCTACTCTCCAGAGAGTCATCATGCTGGCTTGGCAGTAGTTTTTATCTGTAAGTAAATTGTCATCTGCT-CTGTGAATCAGTCATTAGGCTGATTTTCAGTGGTTTAAGG---TCTGGAGGATCGTTTTAGAAACAGAAGACAGTGATAAGtggtattattttatatattatgtttattagGTTTTC-CCTAGGcttctaaaaattttttctttaaaggctTGTTTCTCTTTCAGATGATTGTCTAAATTTCTGTTTAATGAATTCATTGTTCTGGAATGTGAACT-GGAAATTTAAACAGTTGGAGAATTAAACCATTTG-TTATGTAACAAATAGAAATCAAT-------ATAAAagattgtgttttgctttttgactACT-TGGTAAAT

a score=22233
s chr3           152738063 2218 + 160039680 TGACAATTCACTTATTTCGAATGAGGAGAAGGTTGAATAGGATT-CTGCTTCTTATACATTAACCATATCTGTTGGGCTTTGGGCTGTATGTAAAGATCACTTTTCTGCAATTCTTT--TGCTAGTCACATTGTCCTGATGCTTGCTGATGACATGGCGTGCAATGCTCGGAACCCCAAGCCAGCCACAGTGTTCAGCCACAAGAACATGGAGCTCAATGTGTATGGAGACGATGTGGAAGTGGACTACAGAAGCTATGAGGTGCGTC-----------CTCCA-TCTGAAGCATGAC-AGCCATCTTTAA-----------ACTCCAGT--------------------------TAGTTGCCGTTGAGCTCTGGTGGGATTCAGTCAGCGTTTGGAGTTCACAACTAAATGCAGGAAGT--------------TGACCAGGACAGTTGTGCTGCCTGTTTCA-ACAGGAAAG-------GTTGGCTTTTC-ATGCTTGGTCTGCAG-------TCTCGGCTTCAGTATTTTTATTTGGCATATTAGTTGTGGATAAACT------------CCCTGACTAACA-AGGACTCCTCTT----CTCATAGGCCTTGTCTAGTGTGTGCC-----CTGTGGGCCTTATGTGCCCAGGACAGTTAAGAACAAAACCGACCACAGGACTGTAAACTGACTGAAGCATTATAAACGAGA------CACTTTTCTGCTG---CCATGTT-TTTgttttgt---tttgtttttaaaactcaattgcatggttctcaggagttact---ttatagatgacaggttgtgccgcag-------ggttaaggttaggcCCATCTGTTTGACATGAGACCACCTTAAGTAAGCTCCCACCGTGTTCTAGTCACCCAGTTAGAAGT-AACATGCTCGCCAGGAGTGGTATTGTGCCATATCTTCTTCCTTAGAAACTTAGTTTTTAAGTTCA---------AGTCTGTTTGGGATTTGAAGCCGTCTTAGATCCTGCTT-CCTTCTCACCAAGCCCCCTGAGGGTGGGAGGCGGTCTCAT----GTCTGCAGAGCT--------------------------CCCACATCAGTTGTCAGAGCAGCCTG-------------------------------------------------------------------------------------------ACCCGGGCTG-------------------------------------------TCAGCCCCT----------------------TTAAGGACTTGTCCTGTTTCTGTGTGT-CTTACAGCTAGAGAGTACTCAAGTTACAGCTGCCCAGAAAAGTTCTGCAGA----TTGTTATGAATGAATGTTCGACTTCT---CATTTGGTCATTTGAA---AGAGTAAAAACATTCCCTACCTTGTGAGCCAATAAGAGATCCTGTTAAAACCCTCAGTATTTTGCTGTGCTCTGAACAGCTTATGCACATGTGTTCATACATGTAAACAGCTTGTACACATATGTTCATGCACATCTTC-CACTCATG---------GTCCAGGGAAAACAATCT-GTTGGAAAAGCTGAATGGATTTTCTGCtttttaattaaattttaaattatGGATGATATATGACTCAACTGTTAACTTTAAATTTATTTTTT---CCCT----ACAACGTTAAACATGCCTTTGAAGAATCCCAGATGCCTGGAAATTTCAAATTGGGACGATCTGTGTAAAATGTGTTTTATAAGTTGAAGATAATCTGATAGAAGTCTAAGTGACACAATTCATCCAA-ATTTAAAGATACATATTTGGCAggtggtggtggtggtggtagtggCATGCCATGTCCTCTTGTGTGACTAATCTGTCATTGACTGAGTAGTGGCACAAATTAGCTG-TATGATGTAACT--AGTTATTTACAAGTGTTTGTATTTTGTGTCCTCCCAAAGAATTACTTGT--------ATAAATAAGTCAGGAAACTTTGAGATCAATTTTTAA-----------CATATAGTATTTAAAATTCTAAATTGAGAATTAAATTATTTTGCTCCAACATAGCTTTTCCTTGTTAGTGTTTAGTCCTAAGGCGTTTCTTCCCATTATgtcttgctgtatagcccagtctggccttggggttcccttctcttgcctcagtctcccCCCAGCACCCCCCCCCATGCTGGGTCACAGGCACACACCCCGCTGCAGGCTGAGGCACTCGGAAGTGTATGCTTAGCTTTAGTAATCTAGTTTTTACT---TGCACTATAATTTGCTTTC----------TGTTTTATTTTCAAATTACGCTGAGTAATATATAGCTAG---------------------GAAGACTA--TTTTGAATATCTTCAGGTTCGATTTCATCTGAAATCTTCTTTCTTCTAGGTAACTGTGGAGAACTTTTTAAGGGTATTGACCGGGAGGGTTCCACCCAGTACCCCTCGCTCAAAGCGTCTTCTTTCCGACGACAGAAGCAATATCCTCATTTATATGACAGGT-ATTTCAGAGTTTAAAGAGTTCTAGTAGATTATATTGAAA
s HiC_scaffold_1 139576507 2345 + 233722169 TGAAAATACACTTATTTTTAATGAGGAAAACTATAAACATAGTTGCTAAATGATAGCAATAAAACCTATgagtttaactttttatttcatttaaagagCTGTTTGCTGGTTTTCCCCACCCCTAGCCACATTGTCCTGATGCTTGCGGACGATATGGCCTGCAATCCTCGGAATCCCAAACCAGCAACCGTGTTTAGCCACAAGAATATGGAGCTAAACGTGTACGGCGATGACGTAGAAGTGGATTATAGAAGCTATGAGGTAAATTGGTTAATCTAGCACCATTTTGAAGTGTTACTTTTCAGCTTTAAGACACTGGAAGAATACAgtggtttcattctttttaatttagcATCTAGTTGTCACTGAGCCTTGATGTAATTTGTCC-----CTGGAgtttatattacaaaataataggTGAGTAAAACTATTATGGCAAGAACATTTCTTATATGTATCCAAGATAGAAAAACCTTAATGTTGGTTTCTCTCTTCTAGCTTTATAGGGAGGTTTCATAgatccattctcttttttttgtgt-----ttggagacagggttttgctatgcagttcaggctggcattgggctcactttgtagcccaaa---ctggtctcagaTTTGCCACAAtccgcctgcttcagcctcccaag--tgctgg----------gattatgggagtgtgc-----------caccatgcccggcatgAATCCATTTTTTTACAGgaaatatattatttgtttttcatatttgatcTAAAATTTTGA--GTTTAGTATTGAGTATCTATTGAGTTAGAAAACATTAATTATGGCAAAATTATAATGAGTAACATAAAATCCATATTTTTG--------CTACTTTCAGtgtttttctgc------atatataaCTATGTAAcagtaaacatttaaattaaaaatgccattatgttaaattttcttcc---ggaacttctttttaaaagtaatagatTATGACtgtatttaaaatgtgaatttttcctAGATAATACTTCCCTTTTTACTAGGCTACCAGA-AGTGAGGCACAATATCTTCTGAGTTTCCAGACCTATGTTTGGAGTATTTTGAAAAGCACATCTATATCAGCTGCTCTGGTAGCctatgcctatagtcccagcgccctgggaagctgaggcaggaggatttcaactTTGAACTCAACTGTGCACTTTAATCTCACAACAAAAAATAGTACTGGGGCTGAATGCCTTgctttcaatctccagtattacaaaaccaaatcaaatcaaacccTGTTTTCCTAAGGTGTAAGATCCTTGAGGATGTGGCCTACATCTCTGTTCACTTGTACCTGGCAAGTGC-----CTGCAGCCTGCACTCAGTGTTTGGCAAATACCTCAGTATCACTCAGAGTGTGACTTTTAGCTGTTTAGTCTTTAAAATGTAGATCAAAAAC-TTCCCTTCCTTATTAGCCAGTAAGAAGCCCTGATAAAATAGCTTATA-TTTGCTGTCCTGTGGTCAGAGTGTA---------------AGTCAAGCAATTTATACAA--GTGGACATGCTCATTGTCACACCCAGGAGCTCAGAAGTCCAGG--AGGTAAGCTGGGTGGAAAAGCTTGATGGGT--------------------------------ATAATATATGACTTAGCTGTTatctttaaatttgcattttatgctctttaagtaaaaataaattttccttcacAGAATCTTGGAATGCTAGATATTTGGTTTTAG--------GTGTTATCAATTTTGTACATATTAAAGATATTCCTAACACAATCTAAGCAACAAAATGCATTAAGCAATTAAAGGTACATAATT---------TGGGGGACTTGTTTATGgaat----tattctttttcataaCTAATCTGTACTTGACTCGGTAGTTCTACATGTTACCTGCCATAATGtagctgaatttatttactaacTTTGAGATTTTGTGTCTTCCCAAAAAATTGCCTGTTAATACAGATTAATAATTTA-TAAACTTTTAGGT-AATTTTCAAAGGCAATACTTTGCATACTTTATAAAGTTTCAAATGTataattgacttttttttctctaaggtagtttt----------tatttagtttttaacaattttt---------------------------------------------------------------------------------------------------------------------------------aatagaAACTT--TTTTGgtgatatatattttaatggatGTACTTTAATTAGGTTTTGGttctttggtgttttattttcag--tatggTTAGTAATACATAGAGAAAGAAGGAATgtttttgaaagtgaaaaataatttttagatttcttcaggttttagttctgt-----ttttccttttttcaggtGACGGTGGAGAATTTTTTACGAGTGTTAACTGGGAGGATCCCGCCTAGTACTCCGAGGTCAAAACGTCTTCTTTCGGATGATAGAAGCAATATTCTTATTTATATGACAGGTAATTTCAGAATTTAGAGA--TGTActtaaatataatgaaa

a score=9723
s chr3           152742473 129 + 160039680 TTGGCTTTCTGTAAGGTCATGGAGGGAATGGTTTCTTGAAATTCCAAGATTCTGAAGAAATCACCAACATAGAACTTGCAGATGCGTTTGAACAGATGTGGCAGAAGAGACGGTAATTAGCAAGTAACT
s HiC_scaffold_1 139581476 129 + 233722169 TTTGTTTTTTACAAGGACATGGTGGAAATGGTTTCTTGAAATTTCAAGATTCTGAAGAAATTACCAACATAGAACTTGCAGATGCTTTTGAACAGATGTGGCAGAAAAGACGGTAACTAACTAGTGACT

a score=25345
s chr3           152744329 2331 + 160039680 TCTTTCAACTTTTAGCTAATGAGGTGGCTCAGAGTTAGATTTTGAATTTTT---GGAGAAATGTTAAAGTACACTGCCAGCACGATCCACCTCCGAGCCTCTGTCCCTTCTCTTTCAGCTACAATGAGCTGCTGTTCATTATTGACACTTGCCAGGGCGCGTCCATGTACGAGCGGTTCTACTCTCCTAACATCATGGCCTTGGCTAGTAGCCAGGTGGGAGAGGATTCGCTGTCGGTACGTGTGTTCTCCCTTGATTCTCAACCCCCTGATATGACGTGTTTTACGAACATGTGTGCTGATCTTAGACGTTG----------------------------------AAAGCAGGACACTTGTGTATTACACCATATCTTAAGGTGATCCTATTG-----ACACTGACTCTCTCCCACGTTCACAGCACCAGCCTGACCCTGCGATTGGAGTTCATCTTATGGATAGGTACACGTTTTATGTCTTGGAATTTTTGGAAGAAATTAATCCAGCTAGCCAAACTAACATGAACGACCTTGTAAGTA-TCTGTTGGTTTGA--TTACAGCACGTGGGTGTGCTGGCTGTAATG-GGCTGTGTGAGGTCTGCTCTTTCCAGGATCCCATGGGTGCTGTCT------TTGCATCATGG--TGTGG-----CTTTTAAATTGTTTTGAA-TTCACCTTTTTATTAATATCTTCTTTGAAAAAAACCTTCAAAATCGTGCTTATCtgtgtgcgtgcgtgc------gtgcgtgcgtgcgtgcgtgcgtgtg-------tgtgtgtgtgtgtgtgtgtgtgtgcgtgcgCAgaggcagag---------gacaacccacagaagttagc------------aggttatgtg---------cttctgcc--------------------------gtgtg------aatttgggggatagacctcaa--------ctcagcttg--ttgggttggt--ggcatgtgcctgtacctgctggatcatcttg-tcTTCCAGTGCTTC---CTTTACCACACATGGCC-ACAGCTTCAGCCCAG-TCACCTTCTGTTCT-GAGGCACTTGGCTGTCATCTCTTATGT----TTATTCTCTTGTCTACTAGGTATATTTTTAAAGTGATCGCTCCGTGTTTTGAAGTTCTGCCCATTCTGAGTGGGTTAAATCAGGTGTTA-CTCTTCCAGGAAAGCTACCCGAGATTTTTCT----TGGGATGTATTTTATCTTTTCAGAGCTTCCATAGAACATAATTTCTCCTTTGTATCATTTCACACAGTCTGTC-TTTTGTTGATCGCAGACATTGAGT-GAAGTCTTTGTCATCTAAGGTGAAGCTCTTGGAAGAGAGAATCTTAACCTTACATAGTTTC-TGTGGCCTAT------------AATTTCTTGGTATAAC---TTGAATTTAATTGAA----TTTTCTGGTCTTTCCTGTG---TTGATTGTACCATTCCAATCCTGGCAGCTTGAGGTTGCTGTTGAGTTGGCACAGCGAGAAGCCGCAGCCGGTGGTTATGTGATCACAGCACTCCTTGCGTCTGCTTACCTGGGTTATTCACCCGTACACATTGGTGTCCTGCTCTACCCTCCCAGTGCCAGTGTGTTGCTTGCACTGCG---ATGGGCTCAGCGTGGCCTTTCC---GTGTTGGGTCTGTGC-AGTCACTGGCTGTGCCTGACACATGGGGCAGACACTGT--GTGCTT-----TCCTGGATGTTAGAAACCGAGTGGCTGGGCAGATGGCTCTGTCCTCACC------CTTCTCCTCAGCAGCTCTGCTCTGGGACCTCCTTGA----GCAGAACAGTTTTGAGTGGCTTTTCAGTATTGAAGGAG----TCCTGCCAAATTCTGAGAGCTACTGCTGTT-----GGCGCCAAGTGTGGTAGGAGGACTCGCTAACACCAATGTGAAGACTATGTATTTTGATGCCTGTTAACTCCTGATAGGGACTTAATATTAAACTTTTATAATGCTAATTTCATTTTTTAAATAGAAAAAGGCACTATCTTCTTTTTCTCCCTTATGAAACCATGCTTCCCCCGAGACCTTCTGCTGTGGGTCACAGAACTGGAGAGGGATGCTAAGGGTGTTCTCCTAAGCACAGCAGCCCTGTGGCCGTTCATCTCACATAGGAATGTGACACACATTTACCCTGAGCCTAAATAAAATGCACCACTGGGGTTACAGAGCTTTATTTTACAAGTTGATTCTCAGTGTTTGGAATGCATGGCATGCCACCTCAAAAGTGTAAAATATGTAT----TGCTCCTTGATGTCTAATGAATTTAAAAATACTTTTCCCATTGAAATTGCATGAGAAGTAAGTAATTGATTACAGTATATATTATATACATATAATCTATCTATCATCTAATCTATTTATCCAGCCATCCAGCCATCCACTCACATACCTAATCAAT----ATCTTGGTTTCTTGCTTACATTTGAAAA-TTCAGTGATGATTATTTTACTGTCTTTCAATAAGAATAATCTAT
s HiC_scaffold_1 139583882 2248 + 233722169 TCTCCAAATGTGCAGCTAATGAAATGGCTAAGA--TAGGACTGAAACATCTAATGGAAGTATTGTAGAGTTGATCAGGAGCATGATTCCTATCAAAGGTGTTTTCACTTTTCTTACAGCTACAATGAGCTACTGTTCATTATTGACACTTGCCAAGGAGCATCCATGTATGAGCGGTTTTATTCTCCTAACATAATGGCTCTGGCCAGTAGCCAAGTGGGAGAAGATTCCCTCTCGGTAGGTGCATC---------TTCTCCATCTGTAAATGCAATGTTTT-----GGCATGTGTAGCTATCTGAAAAATCACTCTGTATGCTTTATCAGTATATACTTGTTTAACAGAGAAGGAAACTT-TATTTTAAGCCTTTGCTTTA-GTGATAccattaaatatatactttttct-tcttcttttcatagCATCAACCTGATCCTGCAATTGGAGTCCATCTTATGGATAGATACACATTTTATGTCTTGGAGTTTTTAGAGGAAATTAATCCAGCCAGCCAAACTAATATGAATGACCTTGTAAGTAgtcatttcatttgattttataactCATAGGTATGCTAACCTTAATGTGATTATGTGAAGTCTATATTTCTTGGACTTTTGTGTGTACTATTTCGTATGTTGAATTGTGGcctgtggggaaccactcagactgcttcaaagctcaaaGCTT--CTAAGGTCGCCTGAGAATGTGACCC---------TGTTTGTCTA-GCACAGGcgcacagtgggatacagttatgtaacagTACAGGTTGTAGCACTTTATACGGGTGTAAATATGAGATAGTGTCCTGTATAAGAATTATGCAATAAAGACCCAGGGGCTCTTGCTCTTGCACTCTTGGGCTCTCTGTTCTGCTCCCTGCTGCCTGCTATTATGGTGGTGTCTTGCACATGTGTGTTATTAACTTTGGGAACTTACTCTCGAAAATCTCCCTTAGGCCGCCCTGAGTGGGCCAAGACTGCCCTTGAAACTGTT---TTGTTTCGCTTTTATATTGCTTCTCTCCTTATTACAAAAGATCAAAAGCTTTAGTTTGGTTCACTTGCTTTTCCAGAGGTAGCTTTCTGTTTTCACTCATTTGTTGCTGCTCGTTTCCCTATCAGATTCAccttttaaat--tcacttt-----------ttttcCCCA-------GGGATCAGACTAGATTGTATTTCCTCCAGGAACTCT-CCCTAGGTTCTTCCCTGATGGACCTTATTTTATCTTATCAGAGCTTTCACTGAACTTTATGTCTC--TGGTAACATTT-ACG-AGTCTATCATCTTACTGACCTTATTAATTGAGTGGAAATCTTC----TTTAATGGGACATTCCTGGAATGGGCAACCTT-ATCTTACATATTTTTAAGTGCCCTATTATGTTAAATACAGTCTTTTGAAATGGTTGGTTAAATTTGGTTCAGTCTTTTTTCCTGATTTGTCTGTAAtcctgatttttctgtttccctctttTAATC---ATATCACCATTGAAGCTGCATTATGCAAAGCTTGAAACAATAATT---------------------------CTGGACTGGATAATTAA----TATATGTCAATGACTTTCACT-CTTTTCTATTA----------ACTTACactttgtccatttgttcaca--aacaTTTCTTGAGTGTTTGGTAAGTGCGAATCACT-----TGCCTTGTAAA-GAGGCAGGTACTGTCCCTGCATTATGGTCCTAGGAGTGAAG----GGGAGACTGAGTAGACaggactgcctcagcctctgggcttCAGTCCAGTAGTTCTGCATT--GATCTCTTTAACTGTACAGAAACCTTTCAGgtaagttttcttttattaaagagattctCTTCCAAAATTTTGAAAGCTACAGTTAGTTATAGGCTGTCAAACTTGACA-GAATACTTACtaac-----tttaaagataatatattttgatgc---ttCAATCTTGATATAAATTTACT-TCAAACTTGTGATATAATA---------TTCAGTTAAAACGTGataata----------ctattttataaaa-------------------------------------------------attttag------tctc------------------------ttcatttccaattttaa--------aagtttacttt-------------------cattttgg------------attttacagatta------------tataatacatgacaTGTCATCTCAAGAGCTTAAAATGTATACATTGTGTATTTTAATGTTTGATGGA-TTAAAAATACTTCTTCCATTTAAATTATATGGCAAA---------GACTaaggaaactttttttta--------ttattcacaGTTTTA-------------CTGTTCagtttttaataaacatttctcaCGAATATTCATCTTGCCCTCCTGCTTccattttaaaacttcaattttGACTATTTTAATCTTAGTCATTAAAAATGATCTAT

a score=23186
s chr3           152747379 1219 + 160039680 TCTGGCCAG-GTTCCTCATATCATACTTCTCATGTCTGTG--GCTTCCTTAGAATGTCAGGTACCACAGTAGAACCGAAATGCTAGTCTTTAGAGCCAGTACCTTATCTTTAGGTTAGCAGACTTTAAAAT-TCCTCTAGTCTAGTGCATTGTTTTACTGGATTTA---AGAGCTGCGTGTATGTGTGCTTGTCACTATTATACTGTTGTTGTTGTTG---------------------------------CTATTTTCAGTTTCAAGTGTGTCCCAAAAGTCTCTGTGTGTCGACCCCTGGACATCGCACTGACCTTTTCCAGCGAGATCCAAAAAATGTCCTGATCACCGATTTCTTCGGAAGTGTGCGCAAGGTGGAAATCACAACAGAGAAGATCAGTTTGCAGTGGGATTCACAAGTCGTGGACAGCAGGTATCATCGT--AGTTATTATTTGGATAGAATTTTTAGAGC-----------AGGTTCT-----------------AAGGGCTGAGGATGGTGTTGGTAAGTAGTT--GTGTTTCTCCACCGTCTTCACACGCCACAG-------GCTTTTCAG-TTCATGGACAGAAGCTGTAAATGTGGCTGGGA--CTGCGGTCACGATTGGATT---------------------------------------TTGATG--TACTAAGGAGTCTTGAGCTCTCCACAACAGTCTGCCATTCAA---CCCTGTTTTGCTGTTGGGA--CTTGGTAATTGGTTAGAG-CTGGCAGGAGAGG-------CGAGGTCACTGTGTAGGGCAGTGGTATGCT----------------TGTGCATTTGTGAGAGAGACTGAGGGAAATTGGCGGAAGATGGGGGTTTGAAACATTTATAATGCTTTTTTTTTTTTTTTGTAATTACTTTTGAAAGGAAAAAAAAAGCCTCATTGAGATTAAATAGTGGTTCAGTTACCAGGTACTTCTGTGGGAGCTATAGCAGTGCATTT------CTAGCA----TGTATCTCTAGCACTGCCTGAAACC-TGGGCTGCTCAAACTCCAGAACACCTTTCTGGATCACCCGTGGCAGCGTGC----------------ATGATGGGATGGATATATAGTTGCAGTACTGAATTAAGAGAAGTAAATTAAAATGCCAGGAAGGATTTCCCTGTGAAGGCTTCGGTGGCAGGATCACATTTCTTGTTTTACAATTCAAAGCCTTA-TTTTATTTGttctttccttttcctttcctt------tcttttctcttcttttcCAATTTCCTATGGCTGTCGGCCTATAAA-ACTATGAAGGCAGCAGATAAGA-------GCAA-----TAGAAATTT--------------GAATTTCATTTCATTTTTAAAACAATAGCT---TCATATCTTaa
s HiC_scaffold_1 139588620 1394 + 233722169 TTTGGCCAGCTTTCCCTTTATCACTGTTGTCATGTCTGTATAGTTTTCTTAGGATGTCAAATATTACAGTGGGAATGAAACTTTAACCTGTAGAACTAGTAACcag-------------agcttttaaaatatgttacagTCTACTACATGGTC--ATTGGATTTAGTAAGTTATACGTGCACGTATTCATCTGtgcatttatttgttgtttttcttaaaaatttattttctgctttttatttgtttttcttttttttcagtttcaagtGTGTCCCAAGAGTCTCTGTGTGTCTACCCCTGGGCATCGCACTGATCTTTTTAAGAGGGATCCTAAAAATGTCCTGATAACTGATTTCTTTGGAAGTGTGCGGAAGGTGGAAATTACAACAGAGACTATGAGTTTGCAGCAGGATTCAGAAATCATGGAAAGCAGGTATTTGCCTTAAGttgttatttgaataaaatattaaagtctCACAATTGTTAGATTTTTATGAAACATTATATTAACAGGTAAAAGTTAGTGTTGGTAAGTAGTTTAACATTTttactctgttttcattttacataGTCTCTCTGCTTTTCAGATTTATGGAC--AAGCTATAAATATTAGTGAGAAGCTAGGATCCAGATAGAGTTACGTTAGCATCCCACAGTACAATGCTGGTAGCAGTGCTCTTGATACTTGCAAAGAAGGCCTAAAGCTTTGCCTGTAACCTGTGATCAGAGGGTCATACTTTTCTGTTGGGGCCCTTGGTAATGCATCAGGGAAAGGCAGAAGAGAGTAAAGCCAGGTTCTCCCTGCTAGAGGATGGATTGTTACATATGAGTAGTGAGTGTGCACACGTttgaaagaattagaaaaatctGTGTAAGTT-----TTAGAACCATACACAGTGCTCTGTTTCTTCCCCTGTAATTGTTTT--AAAGGAAGTATA---CGTTATTAGCATTTATAAAGTCTCAAGTTGATAACCACTTTCTTGAAATCTACAGCAGTGTATTTTATTGACTATCAACTTTGT-TATTTAGTATCATTTAATGCCATTGGGAACTCATA-TCCAGAGAACTTTCCTGGATTACCCAATGCAACACacaaagttttcagttttgaaaatttcagGTATTTCTAGCTGAACTTCTG-ACTGGTagatatgaatttaaaaaaaaaacataaaatctttatgaagatttaaaatg---------atttctgttctgaatattaaaagacttagttttttcttttcattatttctgttgTGATTGAAGAATTTAATGTCCCCTCCCCCAGTTTCTT-TGACTGTTGGCttaaaaagagttttaaaatagcaattaaaatgttatggtgattttttaaaaatttcttgtttaAATAGCAACTTtcaaattgtctttaaaa-aatagctaGGCCATACTTTAA

a score=42034
s chr3           152766203 1917 + 160039680 AGGACCGTAGGTGACGTC-GCTGATCTCGTCACACCATTGC---ACGTAGTCTGAATACTTTCCTGGCAGTCGTTT--AGGTCCTGGCCATTGCGCTGGGTAGTTTTTCCAAAATTGTCAATAAATATTATTT---CCAAAAGT---TCCTTTAGGTATGTGATAAGCACATCTCAGAGTTGTGCTCTTAGGCTAAT---AATGCTTACCTGTGGCACTGGCCTGAGTGTGTGTTCTGATTGCTTTCT---AGTTCTAAAGAAGACGGCACGGCCGAGGAGCGCATGGGACCTCTCAAGTATGCTGAGCAGCTCCCGGTGGCTCAGATAATACACCAGGTTGG-TTTCTGTTTGATTCTTTTGAAAGAAACAC-ACTTTTAATCTC--AGAGGGGAATGCTTTTGTTAGGCTTTTCAGAGTCCTCGTGTTCTGTCTGTAG--------ATGTTGTGGGTACACTCTTCCTACTGCACT--CTACCCTTATGTGAACACTCCCATATGAAGCTCAGTATTGAAAAGAC-CATGCAGTGTAATGCCTGAACTCTTAC----GTACAATGTGGGGTAGTCTAAATTATCTCTTACGGATTAGAA---------AATGCCAGAAAAC-TTAATTTTGAACCACTGTATTGGGT---------TTATGATGAGAAAGCTGAAAATTAGTCATGACCACTGCTGTGCTTAGGAGAAGCTAAGGAGGGGAGGCCATCATGCCTGCT-CTTGTCCACCTTCCCC---AGCAACGGTTGTGAAGGGTAATTGTAACTGTCATGTGGGTAGTTTGCTCATTTCTAGCCATGACGACTCTGTCATCCTTGTGTGTGGGGCTCAGCTGAGAACAGGCAGTGTTGTAAGCAC-CAAGCTTGGATTCTGTGCTATGACTGTGACAGGCCAGACACGTTCTGCCCTGCTGGGCCACAAGCAAGTCACCTCAAATAGTTTGTTGA--------GCAGCCTGTGGGCCT-GCAATGTTTTTTTAGCTCCTCAGAGCTCATTGGAATCATTAGGCATCCTCACATGTCAGAACGCTTCAGAGTTGGTGTGGATGTCAATACTAGGAGGTTCTCT-TACATTTTTTTCCAATCAGAAGAA--TTTTAGTGGCTGTGGGTTGTTAATA-GTGTCAGTTTGAGTTTATTAAAAGAA--AGAGGattttaatttgaaa-attaaatataaaatataaattcatt-atataaGTAAAACTCAGTTTTTAAATACTGCATGAATCTTAAAAATGGTT--AAGTCTGCCCCTCTGGGGCACTCATCTCT-----GTAACCAAGTCCAGTTTATATGTCAGGAATTCC--TAGATTGTCGGAGCTTAAATGACCTAACAGACTGCAAATGTCACATTCAAAATTCTGTCTTCATGCCTGACTCTCAGCATAAATGAGTTAAACAGCAGAGCAGGCAGCAAGCTGG-ATTTTCTCAGCGGTGAGAGTGCGCCTGCACTTGAAGCAGTACGGAGCAGGCAGCAAGCTGGATGTTCCCAGCGGTGAGAGAGAGCGTCCCGCACCTGCAGCCGAGCGCTTTGCTCAGAACCGGGAAGCAGGGAAGCTGCT----GCTGCTCACCCAGAATGGAGCT--GAACACGCGGCAGGAATTAACCTTTAAGACAGCTGACCACAGGAAATGTCAGAAATGTTTTTATA--ATGACAGGAACCAGCAAGCTGCCCATTTTCTATAACCACTGT--TTTGTAGTTAAACACTGTTTGAATTCAAAG-TAAAGGCACTTCACCCTGGTGAAAATGTTTATATTGTAGGGTTTTTTCCTAGTATGAGAGATAGTAGTGATTTAACACTAAAGTATAAGCAGCATAATTAAAAACCTGAATGATCTATCATAAAATCTCACTCTTTAAGAAATTCT----ACATGATAGAGATCTCTTTTTATTAATCAAAATT------------AAGGTGTAGGCAGGAAACGATGCCTTTAACAGCACACGTGTCCACTCCT--CTGTCATTCTTCTTTGT
s HiC_scaffold_1 139606679 1882 + 233722169 AGAACATTAGGTGATATTAGATAATGTTATTACATAGTAACTAAATATAGTTTGAATACATTTTGTTCATATGATTTAAAGTTTTCATTAGTG-----------TTCTTCAAGATTATTGATTAATACTAGTTAgttcaaaaatatacattttaaatatatattaa-taaatttcaggttttatttatttaaatattttacatatttaaaagtaGTATTTGctttagcttttttaaaaattcctttctttCAGTTACAAGGAAGACCAGATGGATGAGGAACTAATGGAACCACTGAAATATGCTGAACAACTTCCTGTAGCTCAGATAATACATCAGGTTtgctttccattttattcttgtGAAAGAGACAAGATTTTTAATCTCTGAAAAATGATtgcttttgttagatttttcaAAATCAATGTGCAGTAGCTGAAAGGCATTTTAGGCTGTCGGT-CCCTGTTTGGGCTGCACTGATAACGGTTAAG-------TTTCATTTGTTGCACAGCATTGAAATGCTACTTGCTCTGTAACACTAGAATTCTTACTAATGTCAAATACAGAGTAATCAGAATTGCCTTTTGTGGATTAATAACAAATcttaattttagaaaactttcattttaaaccATTGCATGTGGTACTTGTTGGTGACAAGGAGAAAGCTGCAAATACAGCATG--TGGCATAATTCTTTGGGGTGGCTACAAAAGAGAGATGATCTTG--TGCTGCTTCCCCCTCTGCTCCATTATCAACCCCTGGGAAGGGTAATTCTAAATGTAACATGAGCA-TTTGCCCATTTCCAATTATAATGACTATACCATCCCTTTATA--------ATCTTAGAAAAGGCAGTGTTGTAGGTACTTAAGCTTAGACTTTGTACTGTAATTTTGACAGCATTAAC---CTCTACCCTTCTGGGCCAGAgtctaataattttaaatgatctaTTGACTAGAGCTGTAGCCTTTAGACCCAGCA--GATTTTTGAGGTCCTTACAGATTATAGGAAATATTTGATGCCCTTTCGTGTCAGAA-----------TTTTATGAACTATAAT--TATTTGACTCTTTATGTGTATCCTTTCAATCAAAAGAATTTTTTAGCAGATAGGTGTTGATAAGACATGCCAGTTTGaacttattaaaagaaacagaggcttttattttaaaatgttggctATAGAG-ATCTTTTCATTGATAT---TAAAATTCCATGACTGACTATCA----------AAAAACAGTCAGAAATTTTCTCCTTCGGGAAGCTTATCTGTGCTTGGTAATCAGGTCCAGTTTATATGTCAGGAATTCCCTCGTGTTGTCAGAGCTTAAATGACCTAACAGTCTGCAAAtgtcacatttaaaattctgtcttcatGCCTGACTCTCAGCATAAATGAATTAAACAGCAGAGCAGGCAGCAAGTCAATATGTTCTTAACAGTAAGAGTG------------------------------------------------AGCAATGAAACAGTTTGT------------------GGTTTATTTCAGAATAGGTAAACA--GAATCTGCCCAGAACAGCTCACCTAGAATAAAATCTGAAAGAGGAAACAAGAATTAACCTTTAAGATGGTTGACCAGATGAAATGTCAGGAGTATTTTCATAGCATGA-ATGAACTAATAAACTACCTGGCTGATGTAACAGCTGTGGTTTGCAGTGATACAC--CCAGAATTGAAAGATGACAGTTTTTGATGCtggtgaaaat-tttaaattgtgtatttttggc----TATATAAAACAGT-----TTTAACACTGGATTATA---AACATGATTAAAATTCTTTAGTACC--TTATATAATTTAAATCTTTTGGAATTTTTTATGCcctgagtttattttattttcattgaacaAAATTAACTCTGTCCTCAAGGAGTAGCCAGGAAAGGTCACTGTCAAGGACAGA-GTCTTCATTTATTCCTGTTGTTAttgcttgt

a score=19760
s chr3           152773779 1299 + 160039680 TGCCACACACTGAAGTAGTGTAGCT------------CTCTGTCACCTAACTGCCTGAGCTGGAAT-----GAGCATGCTTCTTAATACGAACTGAAGTTCTCATTTATGGTAACACTGGCATGTTCGTGCCAGC---GTCCTGTCTTACATGAGAAGAAGGGTCAGTGTCTCCAGTTACAGATCTGAGACAGTCAAGGCTACTTGCATTTCATCATGCCAGTCACA------GTTTGGGTTATGTGTCACTATTTTTTCAGTTACCTCTGATTATAATTTCTGGTCTGTCTGCCTGTCTCTCTATTTATTTCCA----TATTTGATGGTCATTTTGCTTTACATTCAAGATGCTTTATCTG-ATCAGTTTTTAATT------TTCTCATTTTGTGTGTGTGCCTTTCTAAATGTTCCAGTGCTCTA---------------AGTTCATTAACATAAAATGAAGCCCGTGTTGTTGTTGTTTAACTGCATGTCCCTGGCGGGTGTGTGGCTTAAAATGTC----TAAATTGTATGGAATATACACATCTACAGCTAGGTAGTT--ATCCAGTCTACACTATTGCTA--GAGATGTGTGGTGATTACAGATGTGTAGGTTAGGTACGGATTACTCTTTCCCTCTCTGTAATTAGCACCATGTATTGTAATGAAAGCT-TGTAGAGCTTGTGGTGGAGCAGG--------AGGTGTCAGCCGTTGAGATCCTAGAA-----CAGGC---AGAGTTTGTTGTTA-------GCATCTTA---------------------CAGTAGCAGTTGCA------------------------------GGTAAGAA-------------GGGCTGTGCAAGAGCTTAGTCACAGAATATTACCCACAGAGAAGATCTTGGTCCGTGGAAGAATCATTATGAATATGGGTAAAATAATTACAATATTTGTTTTTATTGTAAAGATACGCTAAGTACTTTCATAATGACTGCTGTGACTAACAGTTACTACTTTTATTAAAAATGCTTTGTTGAACTTTATTTGAAAGTCATTCAGTCTGTGGTCGGTTTTTGATGCAAGCAAATAGAGTTCCAAAAAATTAATTTAACTGAAATTAAATTGTTTCTCCCATGAATGGCTTCA-TTTAAGCACAGAGGGGAGTTTTGTGATTTGTTCTTCGGTTGGTATATCTCAAAAGAGAGAGTACTCTAGGATTCAGACATTAAAACTTGAAAGGATTGTAAGGCTTCTCCTGGGAAACCCACAGTGAAGAACTT---------------------AAAAAATAAGAATTTAACTGTGTTTGAACAAGAGAGTACTAGGAGCTGGCACA-CAACTTGCATCTGGAAGAACTCCTGAACCAGTTACT-GCTTCAGAAGAGCTTCCTAGCTGGCAGCAAGCTTTACCCATTGGTGATGTGT--GCTGGGG---TTCCTTGTGAT
s HiC_scaffold_1 139617751 1385 + 233722169 TGCAACAGATCTAAATAGTGTAAGTAGGAATTACTTACTCTGTCATCTAAAT---TGACCAGAAATCACTTTAAGGTGTTTCCAGGTGAGAAGGGAGGTTATCATTCACATTGGAGTTAGTAGTTACATGTCAGCAAAGTCCTATTTTATATTAA--------TCAGTATTACTAGTTACTGATTATTAACATTGAGGATTAACT----TTCATTTTACCAATCATACTTGATGGttaatttatgtat---------ttcatttagtTCAGATTCTGATTTCTGGTAATTTTACAGAaacatggattttttaaaaagattatttg-------ttttacttta--ttca------ttcatatgTATCAGTGTGTAAtcactgtattttccttttttgtatat---tgttttaaTTGGCCAGTTCTACATTCAAGGTTGTCAGTACTTTGTGAAAACAGATTAACGTTCATGTT-----------ACCTTATTTTGTAGGAAGTTTTGAGTTGAAAAATGCCAACAGACATCTTGTGAAATAAACATACTTACCTTCAGGTAGTTTTACTCAATGT-CAACAGTGCTAAAGAGAGATGTCAAAATTATGAATG-GTATGTTAGGTagtaggaatttttttcttttggttagaTAGC--TATGTGTCATAACTAAAATTGTGAAAAGTTTGTAATACAGTAGATTTAATCTATACTTCAGC-attaattttttagaatttttcaggCTTCATATTGTACTTTTATCCTGGTGCATTTTAGTTGGCTAACTGCCTGTAGTAAAGAAACAGTTGTAATATGCCGTAAATCTTCTCTTACTATCTTAGACAAGCATAGAAATAGAAATGGGTTATTTAAGCTCAT-TTCATTGATTA--AATCACATAGAAGA---------GAGGAGAGATCATTATAAGTA-GAGAAAAATGATTACAAGATTTGTTTTTATGGTAAAAAT--GTTagtcatttttataatgatttctgc-acaaaaaataactatattttgTCAAACT--ttagataattttcttttaaaaagaatttagttGGTGTTCT-TTTTTGATACAGATAAATAGAGCACCAAAAA-TTAATTTGACTAAAATTAAATTGTTTCTCCCATGAATGATTTCAGTTTAAGCACAGAGGGAAGCTTACTGATTTGTTCTCCA---GATTCATCTCTAAGAGGAGAAG----CAGGGCTCAGACTTGCACACCTGAAAACATTAGGGTGATTCTCTTGGGAAACCCACATcacagaagttataaaaatcctaCCTAAAAACAAGAAATTGgaatttaactttatttaaacaAGAAGGTAGCAGAACCCGTTATAGtaacttaaatttt------ttccttACCTGTTTACTCACTTAGGAAGAGTTATACAACTAGTGACAGGTGTTATTTATTCTTGATGTGTCAGCTGGTggcttttcttttggt

a score=23329
s chr3           152779608 800 + 160039680 tacaggcaggcaaaaccatcatacatattaaaaataTAAGTTAGGTTTTATGTAAAGGGAATCAATACATTGAAAATACAAATAAACTAT-AGTAAGTAGATAGTGGAAACCAATTATTTTCTCAAGTATTGTAACTGTAACCTTGGTAGATTGTTTTATAATTTTGTTTCTCTAGAGTATAGTATAATTAA--CTCTCATTA--TTCTTAGAAAGGAATCTTGGTGAAATTTTGGTAATTTTCTCTTTGCTTAGCAATAAATATGTATAATTTCAAAAATCCTGTTTAGTC--TTTACATAAATTTAATACTTAGTTCTGTACTC---TAAGTGTTTTGAAGTTATATGGTAATTTTCTC---GCAACATGAAAGGGGGAGTGAA-CCGTTCATAACTCTGAGTGTAGCGTTGCTTAGCTACCCAGCTCTTTCATGTGAAATATTAGA-CATTGTGATAATTGGGAGCCCTTGAGCTTCTGAGTGCTGGTCCCTGACACTGTG-----------TTTTATGTAAGCCGTTCACCTTTGTGTTGGAGATGTTTCTGT---AGGTAAAATAAAAGAAGAGTGTATTTAACAGCAGTCTGGAGAGGGCCTTAACTGTATAAAATTAGTCATTTTAGGAAATGCTCTAATGCACATGAATGAAATTATAAAGAATATTTTAATAGGAGCTTGCTTCAGATACAGCTATACTACAAAATGCTCTGA-GGTACTGATCTGTCACAGGGCTGTA--------------GGGATGTCCAGAATGTTCCATGGAGTTG-TATTAAAATAGCAATCCTG--AGATGGTAGGAGCAGCAGTGGACACACACGGAGAA
s HiC_scaffold_1 139622973 794 + 233722169 tacaggcatgca---ccactatagctgg-aaaattat--------ttttacataaaagg--------CATAGGAAATACACATAAAGTATCACTCATTAGATAGTTGGGA--Agtaattttctgaaata-----attataaCCATAGCAAAtcgttttgtattttttttc---------------taactgaacttttcattaaattttaaagaaagaatctcATTGAAACTTTGGAAGATTTCCATTTGCTTag---------tgtagaaatttaaaaattcagtttctccATTTTACATCGTCTTAATTCTTGGCTCGGTGCTCACTCAAGTATTTTGAAGTTCTGCAGTAACGTTCTCCTAGCAACATGAAAGAGGACCTGGAGCTGCTCACAATCAGAAGCACAGTGTTGCTTGGCTACCTGTCCTTTTAATTTGAAGTATGAGAGCATTTCAGTGATAGGTGGCCCTCAAGCTTTGAAGGGTTTGCTCATGACACATTGCTCATACACATTTCTGTGTATGCTTTCTGCCTTTGTATTATGTCTATTATTATGAAAGGTTAAA--AAAGAGGAGTAGACTTAATAGCAGGCAGTAGAGTACCTTAACTATATAAAATCAGTCATTTTATAAGAAGCTTTAATGGATACAAATGAAATTACAGCATATACTTTAATATGAACTTACCTCAAATATAGCTGTAGTGCAAAATGCAATAATTATACCAGTCTGTCACTTGATTGTAAGTAAAATCATTGTAGAATGTCTAAAGTGTTACAtgtagttgtttttaaaatagcaatattGTTAAATGGCAGCAATATCATTAAACATATTCTGAAAA

a score=18565
s chr3           152780658 535 + 160039680 ATATACTTTTTAAAACAGATCTTGCCTCAAGTTCATTTGTA------ACAACATAGGGCACTGGTCATCTGCAAATAGTGTGTAGGCAGGTGTGTCCCAGCAGTCCGTCTGTCTTCACGTTGGCAG---CAGCCTTTCCTATGGGGCCTTCACAGGGGCCTGGGCA-CCTTTGGGAACCTGAGCTGGAGCTGAAG-------------------CTGGGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGGATTGAACCTTGGGC-TTCAGTTGGCAGAGCCTTTGCGCCTTGGCCATGTAGATT------CGAATCCACTTCCCAAGCTTGGGGTGAGCAATAAAAGCCACGCGC-TGAGTTTGCGGCTGGGGCATCTTGACATCTTGGGCTTGATGGCCTGAGGCTTCACCAGGGCCTTGATGACCTCTGTGCATGCACTCACTGCCCTTCCATTGTTGGCCTGCATCTTCTCCAGGCCTTTCTTGTTGTGCTTCTTGGCAAAGCACGTGTTCCTCAGGACCTTGGGGTCAAC---------CCCTTAAGAGATTCCGTATCTTTGTGACCGGGGTTTCTT
s HiC_scaffold_1    787960 572 + 233722169 atgtattttttattttttttcctgccttggGTTTATTTGTACGATGAACACAGAAGGACGCCAGCCCTCTCCCCCT-GCATGGCAGCCTAGGGGTCACGCCAGTccttctgtcctcacattggcagTTACAGGATTTACTGGGGAGCCTTCACAGGGGCCTGGGCAACTTTTTGGAGCCTGAGCTGGAACAGAAGTTGGAGCAGCAACCTGAGCCTGGGCCTTGGTTGGAG-TCTGGCCTTTA------ACTAAATCCCAGGCATTTGGCTGGCAAAATCTGCGACCCTTGGCAATGCAGATGAAGACATGGATACATTTCCCAAGCTTGGGGTGCGTGATATAGGCAAATTGAATGAGCTTGTGGTTCACACCCATTGGGATCTTGGGCTTGACCTCcctgggctccaggagggtctCAATAGGCTCCGCACGTGCATCCATGGCCTTGGCATTGGGGGCCTGCATTTTCTTGAAGCCCTTCTTGTTGTGCTTCTTGGAAAAATGCATATTCCTCAGGAACTTGGGATTTACGAGATATGACTCTTCAGAGAGT-CATATCTTTGCAATCAGGgtttctt

a score=5822
s chr3           152780689 274 + 160039680 TTCATTTGTA---ACAACATAG---GGCACTGGTCATCTGCAAATAGTGTGTAGGCAGGTGTGTCCCAGCAGTCCGTCTGTCTTCACGTTGGCAGCAGCCTTTCCTATGGGGCCTTCACAGGGGCCTGGGCACCTTTGGGAACCTGAGCTGGAGCTGAAGCTG----GGCCTTAGCTGGAGCTGTGGCCTCTGCCTTGGATTGAACCTTGGGCTTCAGTTGGCAGAGCCTTTGCGCCTTGGCCAT---GTAGATTCG---AATCCACTTCCCAAGCTTGGGGTGAGCAAT
s HiC_scaffold_1 107608221 241 + 233722169 tttatctgtATAAACAGCACAGATGGATACCAACCCCATGCAAATAGTAGCCCAGAAA-----TCACAGCAGTTCTTCTGTTTGCACACTGGCAG------------------------AGGGAGCTGGGCACCTTTGGGAACCTGAGCTGGAGCTGCAGCTGGAGTGGCCTGGGTTTGAGCCATGGCC------------TGGACCTTTGGC------TGGCAACACCTGAGAACCTTAACAATTGCAAGGATACGTGCAATCTGA--CCTGAGCTTGAGTTGGGCAGT

a score=6123
s chr3           152781993 132 + 160039680 ACCGGGGTTTCTTGATGC-----------CATTTTCGGGACTGGTTGTGTGTGGTGTGGTTCTTGGACTTGGCCGTGACTGCCAAGTAACCCGTGGCTCCCGCAGCGCCTGGGACCGGAAGAG--------------CCATATACGTTTTAAAAAGT
s HiC_scaffold_1    788519 155 + 233722169 ATCAGGgtttcttgatgctatttctgTGCCATTTTCAGCACTGGCTGTGCGTGGTGTGGTTCTTGGACTTGGCCATGTCTGCACTGTAAAGCACGGCTGTCA-AGtgcctggaaccagaagaaaagaaaaaagcatttcatgtat-ttttaaaaagt

a score=22433
s chr3           152785112 874 + 160039680 AAATTAATGGAGAGATAAACTTCG-----GCAGGGCTCTTC-CCTGCCGAGTGACTTGGAGGAAGGAGGCGGTTGG-TTGTGCTG--------TGCCAGGGCAG-----------GCCCCTCTGCGGCACGAGCTTCCTTTACAGGATAGTTATCCCATTTGAAGTCTGCCCCTGTAGCTGTCCCAGTGTGGTGTTCACTGGGCCACGCCCTCTTATAACTCATCCACTAAA----CGCTCTCCCATCAGCACATACATTATCTATTGCTGCGTTCTCAGCTCTGAGGT------GGCCATGTTGTCCTTGTCTTGCAGAAGCCAAAGCCGAGAGACTGGCACCCTCCCGGAGGCTTCATCCTGGGGCTGTGGGCGCTCATCATCATGGTCTTCTTCAAGACCTATGGGATCAAGCATATGAAGTTCATTTTCTAAGACTCAAGGATGTATGAGGAAGAATGAATGGAAGACTGCAGCCTTGGAGCAAAACTTAGGTTTTCATATGTTTTT--AAATATGTTGCTTTTGTGTAAATTTGGGAAGAAAATTAGGAAAATTGAATATTAATGAACTTTTGACTTTAAAACATAA--------TATTGTTAATGCACTTGTTTACTGGCCACAGAATATAT------CTTTCATTGTGTTTGTGTGTT--TGAGTTATAGAAAGCAGAGAGCAATGACATTGGAACTTTATGCTTAA----------TTCTTTTTACCCTCCTCTCATTGTAAAAGTGAG-TAGTAAAGGTGTTAG-TTCCCACTAAAGGAAATTACTTCCGTTCATAGGTTTGTGTGTGCTGTCTTGGTCTGTTTATCTATGGACATATGTTCCC---------AACCATACAGAATATGCCATCTCTAATCTTTGGTGTTTACAATGCATTATTAACCTTTCTCCGCCCTC-----GGACATCCTTCAG---GATATA
s HiC_scaffold_1 139630769 921 + 233722169 AAACTCATGAATATATGAATGCCGAATGAGAAGGACTATTAGACTGCAGAATAACTTGGGTGAAG-AGACGGTTGGCTTGGGCAGGCAACCACTGCCCAAGGAATGTGAGCTAACGCTGATCAGTAGGAGCAGCTACCTTTG--GGACATTTA---CATTTGA-GTCCTTTATCATTGCTATTCCATT-TAATTTGCCTAAATTTACTCCTCCTTAGAACACAACCAGTGAAATTTCTCTTTTCCATCAGTATTTGC-CTATCCATTGCTGAATTATTTGCCCTGTTGTTAAATGGACCgtgtt-ttcttgttttgcagAAACCAAAGCTGAAGGATTGGCACCCTCCAGGGGGCTTTATTCTCGGACTGTGGGCACTCATTATCATGGTGTTCTTTAAAACATATGGAATCAAGCACATGAAGTTCATCTTTT-AGACTCAAGGATGTCTGAAGAAGAATGCATGGAAGATGTGAACTTTGGACAGAAATTTG-----TTATGTGTTTTTACAAATACATTACTCTTTTGTAAA-TTGGCAAAAAGTATAAGGAAGTGAAATTTTAACAAACTATTGTATTTATAACATAAATAAAAGTCATTGTTAATGCAAGTGCTTATTGGGCACTAAATATATTTCAggttttcat----tttgtgtgttacaaaaaaatagaatacagaaaCTGAATATAGTGATGGCTTATTTTTGAAAACAGCAGCTTCCCTTTATCCTCttcat-ttgcaaaagaaaattcaCGGAGATATTAATTTCCCACTGACAGAGGTAACTTCTGttaataaatttgtgtgtgtCCTC----CCAATATTTGTATGTACAGATTTTCCTCAAAATGGAGATCATCCAGAATagaatgtttcttttcattt----------tgtattatcattttgtattttccctCTTTGTGGATATTTTTCAGTACGATATA

a score=7960
s chr3           152787523 139 + 160039680 CCCCTGGCAATAGGCA--GATACACCTTGTTTGTGATATTGCTCTTTTGTCAGTCAGGGGCAGAGCACATGGCAGTCC-TTGTTCATCCTAGCTTGTTGCCTGCCCTGGTGGCCAAAGTTGTGTCATGCCTAGGACACATAA
s HiC_scaffold_1 195809929 141 + 233722169 cCCCTGGCAATGGGCAAAGAGACACCTCATTGGTGGTGTTATTCTTGTATCAGTCAGGGGCAGAGTAGATAACAGTCCTTTGTTAGTCCTAGCTTGATGCCTG-TTTGGTGGCCAGAGCTGTTTCATGTTTAGGAcacatga

a score=71155
s chr3           152816500 2570 + 160039680 TTCTTGCTCTGTCCTTCACCCCCTGGGAGGGATAAAACTGCATCTGCTACATGGAAACAAAAGTGTTTC-------TGCTTTTATATTGTGTCCCTGCCCCCCCCCCCCATTTTCTTTTAAGAAAAAGTGTCCTTAATTTTCATGTGGCTTTCCTGCTACCTCCACGAAGCTGTCAGTCAAGGTGGAGGTGAGCTGTAGCTCATTTCCTTTCAGC------TTTCTTTTGT-GTTCTGCCGCTGGAGCTAGAGTCCTCGCTGCTTTTCTGCCCATCTGCACATGCTGCAGCATTTGTCAATATTACATTTAATTTGTGCTCAGAGCACTTCACTAACGGCGAAAACA-AAGCTCGATGAACTTTACCTTAGCCGCGCGTTCAGTCCAGCCAGCATTAGCAAACCTAATGAACT--GGAAGCTTGTCCTACCCAAATGTAGGCCAGTCCTGTTGACTGAACACACTGTATGTTTAGAAACTGACCCTGT------AAAACCCACTTGAAATTTATCTACCTCACGACCCAGTGACTCACTTGCTCTTCTACAATAGAATGAATTTGTGTCCAAGTGTCGATCCAATGCGTCAACATTAAAGAGATGAACACCAAcaacagacatttattgagcgcctattgtgtgcaaggcactgtactaggtatggggctacaaagacaaaggaaagacagcccctgccctcaaggagcttacaatctagtctaacag---acacacatagaaagacag--gacaatccaaggtagcatgtcatactggggcac-aagtagaaa---acggggtCTCTGCCttttattttattttattttattttattttattttattCATTTTTTTGCATTTACATTTTAATACCCTGAGTAGGTGGGGG---------AGTGAGCTTTAACCAAGTTACTCCCAAGCAGTTCCAAGCCTTC----TGGGAAG-TCTCACCTCTTTCCACTTCAGAGTGTCTTCTGGTGTGCGCTAAAAACCCAGGCAATCTGTAACTCTCCTCTGGCCCCACCTCCTCAGGCTTTGGATTTTCATCTAGTTTTGTTTTGTTTTGAGAAACTTCAGAGAGGGTGACGTTTTGTCCTGCTTTGACCAAAATGGCCCTACTTTTAGGAC---------------TTAAACTTCCTCCTC----CCCTGTTCTAGGCCAGTC--------AGGGGCACATCTACCATACCTTGTTTTGTAGTGG-GATTGACTCTGGGACCTACTGCTACTC-------TTCTGCAGGAGGCTCGACACTGAACCCATTCCTTAGACAGGTCTTGAGTTACCAGCCCAGCAGGAATAGCCCAGT-----------------GTTGGAATGACCGATCCAACACTGAGGCCAGAACATTGAGGGCAGAAGGATCTGGAGAAGTAGATGGTGAAGACACGGGG----GCTCAGGAG--AGGCAGGAGGATGAAGGACAAGGCTA--CTCAGTGTGAAATGCTCAGAACCAGAGAGAAACTG-GGACCTTCGTCAGGG-------------AGACCCAGAATCACTCCCC------AGGGCAAACATTT---GGAG--AGGT----------------ACAACACCGGAACACA------------GCA-TGTCTGCATCCTAAAAGAATTTCTACATTTCCCCT--CACTTCC---TACCATTCACTTGCCTTCTAAAAGTTCCTTGAAAT-GTGAAATAATCATGTTTATTTCAATA-TGAGATTCTCTGTCTCCATTCTAATTGAGTTCAGGTGGTTCAGAGATG----CCATCTTTGAAACACGAA-----TCTGGCAGTGACC-----TAAGGGTACCAAGAGGCCACACAAGTGTATCCTTTAGGCACAGGGCTTGGCA-GTCTTTTTCATTTGGTTTTATGAAGGTCTGAGCTTT----TCTTAGGACCTGTGTGTCCCTGAATTGATCCGTTTCTGTGCCCAGTCCGAAGGAGTATAGAGCAGGATGAACGAA--ACAGGGGGCTCAGCTCCCTAACACCCACGTATGCGGAGGGGAATCACACAGCCAAGTCCCCATGCAGCACACTGAATATTTACCTCCTAATGTGCTTTTAATGTGCGCTTTCTTGGGTGAATATTTACTGTAGAATATTAAATGTGAGATTCCTCTTTTTATGGGCCATTTGAAGTGATTGATTCTGTTTGCGAATTCCTGTATCTTTGCCCGTAATGGCTATCTATTGTAATGGCCTCTGCCAAATGTTCTTGTGTTGAAATAACAGAAGCCATGGATCGCCCAGCTGTGGCATCGTATTATTGTGGTCTTAAAAGCTGGGAGGAGGCTGATGATAGCACTGGGGAGAGACGAGAAGGGAACATACC--AAGCCAAGCGAGCAGGGCTCCAAATACCCCGGAACCACTGGGGTCTGTAAGCAGGGTTGTGT----GTCCTGTG---------TATGTTTAATGGTGTTGGGT-GGCATTACGTCGGACGGTTGTGAAATGATAGCGGTAAGACAGGAACTCAATTGCCCACAACCAGGTCCATCAGCACAAGCCGTCCG--CTCTCGGCGTCTTCTTTAATGCAGCGGT-AAAACTGTGACCCAAGTGATCATTTCTTACACTTAGCTACACTAT--------------------------ATTATAGCCACAAGTGAATTTAAAATATTTTTCTGTGAAAGAGCCAAGACTTTGGGCGTTTGGTTGCTTTTTATTCTTTTGAGTATTTGAGGGAAGGAAATTAGACAAA---GGGCGTATCTTGAT
s HiC_scaffold_1 139654454 2640 + 233722169 TTCTTGCTCCCCCTTTCTCCCTCGGG---------------ATCTGCTTCATGGACACGGCAGTGCTTTCTCAGTTTGTTTTTAAGGCGAGTACA-------------CACTTCCTCTTGATAGA-----CCCTCAGTAACCACCAGCGGATCCTGGCAGCTGCTGGGAGCTGT----------GGAGGTGGGGCA-GGCAGAGCCGCTCTCAGCAGAGCCTTCCTTTTGTAGTCCAACTGCAGAAGTCAGAGCCCcagctgctttgctgccttcctgcATACGGTGCAGCATTTGtcaatattaaatttaatttgcGCTAAGAGCCGGTCACTAAGAGTGAAAACACAAGCTTGCTGAACTTTACTCCGCCTGTGTGTTCAGTAGAGCCAGCATTAGCAAAGCCAATAAATTCAGCAACAGTATCCTGCCCAAATCTAGGTCAGCTCCATTGATTAAAAATGTTACAGGTTTAGGTACTGACCCTATTAAAATAAAACCCCCTTCGAATTTAACTATATCACAACCTATTGAATCTCCTGGACTCTTTCAATA-------------CCCAAGCACCAG--------GTCAACATTAAAGAGGTTATGATCAACAACagacatttattgagtgcctattgTATGCAAGGCACTGTACTAGGTGTGGGGCtacaaagacaaaagagaaacagtcctTACCCTCATGGAGCTTACAATCTAGTCTAATAGGACACATATATAAGAAGACAAAAGACAGTACAAGGTAGTATATAATATTAGGGCACCGAATAGAAACAAACAggattt--gtcttttatttacttatgtatt-------------------------ttgCACTGGCTTTTCAATACCCTGAGTAGGTGGGGGGTGGTGGTGAGTGGGCTAGAATAGAGATAA---CAATCTGTTT--GGTTTTCGTCCTAGGACTCTCTTACCTCTTTCTA-TTCCCATTATCTCCTACTCTGTGCTGA--------GTGGTTCACTCCTCCCCGCCTCCCCCACACCCT---GCTTCTGATTTT-------------------------AGCCTCTCAGAGGGCAGC-CCACATCCTGGTTTCCCCAGGACTGCCCTGGCTTTAGCATAGAAAATCTGCACCATGGAACTCCCTTCTCTTTGCTCTTTCCCAGCCCCGTCCCCACCAGGAGGGCGCTCCTGAAGGAGCTCATCCTGCAGCCACAATGGACTCT-----TTCCACCTTCTCAGGTCGTCACTGCGGCAGGCTCTGCTCCAAACCTGTCCCC-AGGCAGGGCTCTAGTT-TTAAAACATGAGGAAGACCCTGGCAGCCCCAAAGGCGGCTGGTTTGA--GATCACACCAACACATAGG----------------AACAAAGTCAGGAGAGAATGATGTCAAAGAGACAGAGTGCTGCTTAAGAGGAAAACTTGAAGATGAAAGAAATGATTGGGTCAGGTAGGAGCCATGCAGAGATAGAAGAGGACGGTGGATCTTCTCTAGGAGGAGGTTGATTTCAGAACTGTAATCATCTCCCCTGTGGAGTCCGGGCATTTTCTGGAATAAGGTCACTCTCACACATGGAAAAATACTAGGGCATGTGCATTTAAATGGCACTGTCTTAAACCTAACTAAGGTTC-AAATTTCTCCTTCCACTTTTGTTTAGCATCCATTTAGCTTCTAAATCATCATTTTAGTCTTGGAGGGGGAGtgtttgtctcaaaaacaagaccaTTCCTCTCCATTCTAAAGTAATTTAGAAAGATCATTAATGGAGAAAACGTTTGGAAAACAAAGGTCATCTGATAAGAGGCGTCATTTGGAATTCCAAGAGGCTGCACAGATTTCTCTTTTAGGTATGCTACTTTGTGCTTCATATTAAGTTGTTAAAAGGAAACACTGAACTTTAAAAGCCTAGGACCTTGGAGCTCCCAAACTGCGCCAGTTTAACGTCTAGCCCTCAGGAGTGCATTCCAGGGTTAGCGAAGCACAGGGACTTAAGTTGCCGAACACCCATTAACGGTAATGGAAATCACACAGA-AAGTCCCCACGCAGTGCGCTGAATATTTACCTCCTAATGTTCTTTAAATGTACGCTTTCTTGGGTGAATATTTACTGTAGAATATTAAATGTGAGATTCCTCTTTTTATGGGCCATTTGAAGTGATTGATTTTGTTTGTGAATTCCTGTAACTTTGCCCGTAATGGCTATCTACTGTAATGGCCCCTGCCAAATGTTCTTGCATTGAAATAACAGAAGCCAGGGGTCGGCCAGCTGTGGCATTGGGTTTCTGGGGTCTTAAAATCTAGGAAGAAGCTGATGACACAGctagggaggggagagaaaggtggGTTACAGAAGCAATCTGACTTAGGCTTCAAATGTACTGAAACCACTGAGGTCTGTAAACATGGTTTGGTAATCATCTTTTATATCAGAGTTATGTTTAATGCTATTGCATGGGTGTTAAGTCCAGCAGTCATGAAATGACAGTGGCAAGACAAGAATTCAGTCGCCCACAAGCAGGTCCCTCAGTACAATCCATCAGGATTCTAGGCATTTTGTTTAATGTTGCAATAAAAACCACCACCCAAGTGATAATTTCCTATACTTATTGGTACCATATTTAAAAACCTATATTAATTCACAAATTCTAGTTCCATGTGGATTTGAAACATTTCCTAGTGC---AGCCAAAACTTTTGAAGTGT-GTTGCTTTCTACTCTTTTGAGTATTTCAGAGGCAGAAGTTACAAAAATATGGAGCTATCCTAAT

a score=53313
s chr3           152819628 2327 + 160039680 aggtcagatagtattcttaccccttggtagctatgcttttccaatattccataagcataggatttgtcaatggaaccacttatatttcaACAAA-TAATCTCTTGGAGGGATTGTGAA-GTAGCCTGTCAATCAACTG--TGCAGTTTACACCCTTCTTCTG-------------TGTATATAAGAAGACTAAACAGGAGGTTGTGCTATGGTAAAAATAAAATTCATTTTCCTACAAACTCAGAAGACACTTGAAGA-ATGAATTCCACTATGTCTTGGACAGCCATTTAATTTTTTTCTTTTTCTTTTTTACTGACTTTAAATAACTCAAGCCACACCACAATAACA-------CTTTGTCTTTGCTGTCTGAATACCTGGACTGTATCTGCAGCTCCACAATGGCGCCCTGCATAATGAATAGTTCTACTTAATGAAAGGGCATGGGACATTATCACTAATTAAAAAGATGGGAAAGAACTGGTG-GTATGAGACACTTTATTCACAAGTCCTGTCCTGTTTGTAGAGAATGCCTGTTCCCTCACG--ACATTAGCTGCTGCCCTCAAGCCTGTCATTAGACACACTAAAGTCCCTTTGGCACGATGTAAAGAAGAGT-CTAGTAT-TTCTTA------CTCTTCTGAGCGATACAAGTTTCTAAAATGAAAGTCTATAGTACTACTTGATCGTGGATTTGAATGGAGAGAGGAGTCCTTCATATTCCA---------------------------AGACTTGCAGCCGGT------------------------------GGGGTGGAA-------CTGTTCTGTGTTCTCAAAACATGGGCAGCTCTTGGCACTGCCTCCACCCCCTGCCCCCAA-----TTTCTCACTTTCTTAAAGAATCTAGGGATAGTAGTTAGGCAAGAGAGCC---CCAGGAGGAGGCGTGATGTCTACCCAGAGGACCCTGACATCTCTACCCTGACTGGA------AGTTTCCTCCTACTGTCAGCCCCAC---------------ATCAATCCAAGTGTC--TAGTCCTCCTATAA----ACGAGAGGCTCTGACTATCTTAGATTTGCAAGAGGAACTCGGGACTTTATC----------CTACATTCTAAGGAAAGGGGAAGTAGAACTCAAAGAGAAATAGCTTGTA-----------------------------------------------------------------TTATCAGTT--------GCTACTGAAGAAAAAGTAAGGG----------------------------------------------------------------------------TATCTTTAAATTTCTCTCATTAGCATCTTTTTGTTTTAATAACACAGTTTTTGGGTTTCAATTTTGTTCTTTTGGA-CATTTATGTACATTAGAAAGTGTTATAGCTGTTTTTGTTATGAAACAGCAAATTGCCTGAAGCAGAGAGGTTCAAACA-ATGTTGCACA---TTTCCACATCAAATACTGATTTCAAGCTAGTAATGGGCATTGTGAATTCAGTAACTCATCAGCCCGATCCTAGCCCATA-CCAACCACCATTCAGGATTAAAGAGTCAGGAAGAATACATTGCCACATAATCATAATCTATAAAAATACTG-CCTAGAGTACACTAAAAAACTCTCAATAAATAAATAGCAGACATTTGCTTTATGAAAATCATT----GGAGATGTGCTCTTCGGAAGC-ATGTCCATACTTTCAGGCC---TTTTACAAATCACAaa----gtctgacaaatgacagagactataggtcaggttaggt-------------ttctgataaaaaagtcttttgacgtgg-gtatctgtaaagaaatgcaactaaaagtggcgggctgctcccggttcagtttcgaaggcaatactcccagagacctggggtgttcctagccatggcagtgtcactgaatcaaggcttcagttgct----------ctttccaagagacaacactcattagcatgtaagcgttctggaat--gtt----------------------CTCTGGCCGCT------GGGATCTGTCCATGGTGCTGAAGGACGCCGCTCTTCTCGGTCACCCATTCAGTTCCCGTTTCCCTGC-CTAGAGTTTAAGTCCTTCCTCTCC----TGCCACACAGCGTGGACACCGCTGTCCACCATGTTCACCCCTCAGAACACAGGCTTACCCTCGGCATGATTCACAGCGGGTGATTCTGGTTTCCAGTCTGGTTGGAAAAAGTGAATGTTGAATGTCCGTGCCCAGTTCTTAAACACCCGTTTCTCTGTAATGAAACGGTGATGACTGCCCTTGCGTCCTCGCTCGTGAGAGAGGTACATTGTACATTCATCGGGTCCTGAAGGCTCATAGTAATGATAGGGTACGGAAGGATGCTTTGGGTCCCTGTGGG--AGGAAAGTGGGACAACT-GTTAAAGCAAA----AGAGAGGAAAATAATGCAAACACCCAAGCCATACCCGACATGGAACACACTTTTTCAGTGTTACTGCAATAAGCTGATAAACACAAACCATATTTCGTATTTCCTCATCAAAAGAACGTCAGCTGATGGGTTTTTGTTTCTTTCTGGTGTTGAAGTAATAAGAAAATGGAAAGGTTTT
s HiC_scaffold_1 139657129 2573 + 233722169 AGGTAAGAGAACATTGTTATGTCTTTGTAACTATGCCTTTCCACATTGCCATAAGAATACGACTTGTTAAAGAG----TTGACATCTGAGCAAAACAATCTTTTCATGTGATCCTAAGTATGGCCTATAAATCAGTTGCATAAAATTTATATCCTTTTTATGCTGATAGAAACATTGTATGTTCAGATTCCATACAGTAAAC-ACACTGTGTTGGAG-TGAAATTCATAGTTCCA-GAACtatgaggaaattttaaaacatgaattccGGC-TGCTTTAGGCAGCTATTTTAGCATTTC-------------ATTGTCTTTTGACAATTCAATCTataccttaaaaataatatgaactTTGTGTTTGTTGTGTGAATCATTGGACTGTATCTGCCTTTC------AGCACTCCGTATAGCTAACAGTACTAGTTAGTGAAAGGGAGTGGAATCTTTGTtctaa----gaagaggaaaaagaactgGTAAGGGAGAGAC-CTTAAATCACAAATTGAGTC-------------ATGGCAGTCTCCATACATAGTATTTGCTGGCACCTTCCAATTTTGCTTTACAGA-ACTAATGcctccaaagcaatgtaaaaaaaaaagcactagtATATTCTTAAAAGACTATTTTTGGACAATATTACTTATTGAAATGAAAATCTATCATGCTAACTGATCTTA-CTTTGTATAAATTCAGTCTTTCCTCGTGTTTCAGACCAAGGAGTTAGTGAATATAATTTAAGATTTGCAGCGAGTCTGAACAGCACATAAGCTAATGAGCCATACGAGAGAGAAACATTTCCTGTTCTTTTCTCCTCATAGAAGGGCAGCTCCTTGCAGTCCGGGAACCTTTTAG----AAAAGTGTGTTTTGCTTCC--AAAGAAGCAGGGGATAG-GTTTAGTCAATGGGGTCTGTCCAGGAGGAAGGGCTTTACCCAC--AGAGG-----GAGATAAGTACT---ACTGGAGTATAAAATGTCCCCAGAATATGGTCCTCACTAAAGTTGGAATCCTATTGTTCCAAATATAAAGAGTCTTCAAACAAGTCTATGAAGGACATACAGAGTTTTAGATTTGGAACAAAACCTAAGAGATCTTCCAGGACAGCGACATCAttttaaagaagaggaaaagagggcTTAA-GAAAAGTTACTTATAACAGATgttactaggggctggggatttagctcagcagcataagcgcctgccttgcaagcaggcagtcatgagttcaatccctggtaccgataaaaagggaaaaaaccaaaaaaaaaaaaaaaacaaaaaaaaaaaaaacaaaaacaaaaaaaaacaaaaacagatgttACTAAAGAAAACTATCTTTAAGGTT-TCTTGTTAGCATCTTTTTGCTTTAATAACa--gtttttagttttcaattttgTCCTTTTGGAGCATGTCTATACATTAGAAAATGTTATAGATGTTCTCGCTATGACACAGCAATTTGCCTGAAGCCTAGGGGTTCAGAAACACATTACACAACATTTTCAAGTCAAATACC-AGTGCATGCTAACAGTCAGCTTTGTGAACACAGAGGCTCATCAGCCCAATTCCAGGCCATTTCCAACCATCAGTGAAGA--GGCAAGTTAGGAGGAATAAATTACCACAGAAtcatactgtataaaaatactggcCTAGTGTGCACTAAAAaactctcaataaataaatattggacATTTGCCTTATGAAAGTCAGTCCGTGGTGATGTGCTCTTCGAAAACCATGTCTGTACTTTCAGGCTGCTTTTTACAAATCACACAAACAGTCCAACAAAGGACAAATGTTATA---TAGATTGGGCGATAGAATACAACTTGGTAGAAAAATGTCTTTTGATGAGGTGTTTCTAtaaaggaatacaaccac---tgttgAGTTGCTT--GTTTCTGTTTCAAAGGCAA--CGGAAAGAGATCCAAACTGCTTTTAGCCACAGTAGCGTCGCTGAAATGAGTGCTCAGTTACTAATGTGACTCCTTTGAAAGTGGCAGCACTCCTTGGGACGCCTTAACTCTGGAATTTGTTGGCACAAGCCAGCTACAGTGAGCCTTGGGCGCGTAGCTAGGCAGCTGTCCATGGTGCTGAAGGAGAGACTGCTTCTCTG-----CTTCCAGTTTCTGTCTGGTGGCTCCAGAACTCTGATGCTGTGGGTACCAGGTATTACATGGTCTGGGCTTAATGATCTTGCATGCCCATTCCTCAGAACACAGGTTTATTCTCCGGATGATTTACAGCAGGCGACTCTGGTTTCCAGTCTggttgaaaaaaatgaatattgaatGTCCGTGCCCAGTTCTTAAATACTCTCTTCTCCGTGATGAAGCGGTGGTGACTCCCCTTTCGCCCCCGCTCATGGGAGAGGTACATGGTGCACTCATCAGGTCCAAAAGGTTCATAGTAATGGTAGGGTACTGAAGGGTGATTAGGATccctgtaggaaaaaaaaatgagataaccAATCAAAGccaattttttgttgttgactGATTCAAGTA---------------AGATGGTA---ACTTTT-------------AATAAGCTGACAAGCACAAA-------TCTTACTTTCTagccaaatgaattttagtaaatTG---------TTTTTCTGGTGTTTATTCAGAAAGCAGgtggtaaggtttt

a score=5748
s chr3           152821526 198 + 160039680 CCCTCGGCATGATTCACAG--CGGGTGATTCTGGTTTCCAGTCTGGTTGGAAAAAGTGAATGTTGAATGTCCGTGCCCAGTTCTTAAACACCCGTTTCTCTGTAATGAAACGGTGATGACTGCCCTTGCGTCCTCGCTCGTGAGAGAGGTACATTGTACATTCATCGGGTCCTGAAGGCTCATAGTAATGATAGGGTACG
s HiC_scaffold_1 187021492 198 + 233722169 CCCTCGGGAGGTGCCCCAGGCAGGGTGGCCTAGGT--CCAGGAGGGATGAGAGAAGGTGATGCCGTACAGCTGGGCCCACGACGAGAAGACCCTCTTCTCAGTGATGAAGCGGTGGTGGTTGCCCTTGCGGCTGTGTTCGTTCTGAATGTAGGTAACACACTCATCCGGCCCCTTGGGCTCATAGTAGTGGTAGGGCATG

a score=23544
s chr3           152823889 1109 + 160039680 TCTTTCAAAGCCTGATG--CCTGAGGGCCCTTCTCTAAGAACAGAAGCTCCTGTCCCCAAGATGCTCCACCTCCCAGCAACTCTCCTTTTCTTTTTCTTTGGAGAAGATCAATACTCAAATGAGTTTAAGAGTAGCAGCTTTCC-TAGGTCAGAGATCAAAGTCTTTTATCAGGAGAGGTGTCAAGTCTGTAGCTCCAACAACAATAAACCTCTGGGCAGCTTCTCCTCTTAGGTTAAACTTGTCCCAGGAAGAGAGGTC-----------------------ACATCAGCCCAGATGCTG--TGCTGAGT---TTACACTTTGTGTGTCTAATAATCCTGTCTC----AGATCAGGGGCTG-------CTC----ACCTGCTCTGTCAGTCACTGCAAGATTTC-------TATCCACCCTAGACCTGGAGTAATGCC---AAGGTTTAGTAGGAAGCATTTCCAGTACAGAAAATTCATGTT--GGAGAAAACTCAGGCTGTAATTGGCCACTCCTTACAAACAACAACCAGGGAGGGGCAGAACGGCTGTCTtggtgagtcctgcatgtaatcttagcacttaagaggctgaagcaggagaatcattgtgagttccaagctagcttgggttatagagtgggaccttgtctaaagcaaacaaaTATCAAAACATAAAACAACAGCAATAAATAAGTAAATTAAAACTCAAACAAGAAAACAAACTCCAAGGAGTAGGTTTATGTGAAATCCATCTCTGCAGGTTCCTAGAGCAAGATTTGGAAAAGGAAGGCTGCCAAATTCATTCTGCCATGCTATTACAGGGGCTAACCTTCTCTTTCACATCAATTCAGGTTTTAAATGTGATTCACCTAGGTTTTAGGCATCTTATTGACATCAATCT-ACTAAGGAAACAATTAGGTTTCTAAAAATATCGTGTGATTGATGTAGTTCCTAGGAATAGAAGGTAATTGGAAGTCGTCTAAAGGATGCGCAG-GATCAATTTCCTTATCCAAGAGGACCATCTCTTTGAATGAAAGCTTATTGGGCTCCATATTGATCACCTAGAGGGAG-ATTAGATTTATGTGTTTGGGTATCATGGTTACACAGATGTCCAAGTGGGCCATTCTTGGAAGTAAAAATTGTTTTTGTCTTTTAACACTTTGT
s HiC_scaffold_1 139660935  948 + 233722169 TCTTTGAGAGCTCGGGGGTTCTGGGGTCCCTTCC----AGTCAAGAGCTTAGTTTCCAGAGATACTCACCCTGCTAGCCAC----CTACTTGTTTTCTTCCAAGGAGATCAATACACAAATGGATTTTAGAGTTGCAGCTTTACAGGGGTCAGGGATCAAAGTCTTTTATCAAGAGAGGTGTCGAGTTTGTGGTTCTGACAGCAATAAACCTTTGGGCAGCTCCTTCTCTTGGGTTAAAGTTCTTCCA-GAAGAGAGATTTACTTTCATCATGTAGCGTCTAAACATTTCTCAAGCTGGTGGCTGCTGCATGAATTAACCTGTACAACCCTCATATGCCTGTGTCTGAAGGACATGTGGCCGAATGAAACTCTGGGTCCTGTCCTATCTAGTTGTGACAGATTTCACTGATTTGCTTACCCTAGAAATTGG--AATGCCTTAAAACTTTAATAGAAGATGTTTTCAATACAGAAAATGTCTACCAGGGGGACAATTTAGGTTGGAACTGACCact-------------------------------------------------------------------------------atgaagga---------------------------------------------------aaaataaacaaa----------------------------------------------------------------atggagtAGAAACCTGTGAGGGAAATCTATGCACATTTATGTAGTGTAATTTGGAGAA----------CCATGCCATACTGCCATGAACCCTCA-GGGTTAAGCTTTTATTCCAT-----CTCATGTTTTAAGTCTGACTCATCCAAGTTTTGGACATCTCATTGGCATCAATCTGGCTAAAGAAACAATTAGGCTTCTAAAAATATCGTGAGATTGATCTGGCACCCAGGAATCGAGGGTAATTGGAACCCAGCTAAAGGATGCTAGGAGATCAATTCTGTTGCTCAGAAGACAAGTTTCTCTGAAGGAAAACTTATCTGACTTCATATTGATCACATAGCAAGAGAATTAAATTCACATATTTGGGTATGTTGATTCCAGAGGTATCCAA-TGGGCCATCCATTGGAGGGAGAGTTCTTCCCGTGTTTTAACACTCTGT

a score=49408
s chr3           152831439 1422 + 160039680 AAACTTATAATAAGTTAAAGTCCCCTCTAGGCTAAAGCTGTTCATGG----TGTGGATGCATCAGCCACAAAGGCTGAGGATGTCCT-GGGGTAAGAATGTGGTCTT--CATTTCCCTAGAGCCTGAGAACTTTCTAGACACACTGCTGTGTTTGGCGTAATGCCCAGCATGTCTGACTGATACTCAGGAAATATTTGAAGAACACAGGAGAATGAACAGTGGCTGT---GTGCCTGGGTTCCTCTGCAATTCACCTACACCAGAGCCCTT----------------------AGAATAAAATGCAATCACCAGCAGCCCTCC----TTCCCCTTGTAGCCCT------CCTTCACCAAGCTACTTTTTGTGTGTCGCTTGGATTTCTTGTCTGAGTAGCCTATGTCAAGAAATTC--GCTGCTTACCTCGGAAACCCGTGGCACTATCACT-----GTGTCTGGGGAGCATGCAGCGCCCACACCTAGCTGCCTCTCCTTCACGGGAGAGCAAGCCACAGTTCTTTCCTGAGCCCTCACCCTGACTCCCAG---------------AGGGCACCATAATGTTTCAGGAAGAC--------CCTTAGGAGACAGAAGGTCATGGAAACAGTCAGTGTCGGGTGAGAATTAGCCAAATTGTGGCAGTGGTGGAAGAAG-AGTGGGCTGCCAGAAAGAC---GCACGATACAGTT---TCATGCCTCGCAGACCATCAGCCACACAGGTGTCATTACCACTCTGTACCTGCCCACCGTTGAGTGTCGGACTCTGCTCGGTGAGCTATTGCCGAGTAGAAGCTGTCCCTGCTGCTTC-TGAAGGCAGCTTTATTAATGCTCACGAGCTAATAATTCCAGCAGGATCAACTCTCCAGTATTCATGATACCTTTGAGATGTCCTTCACATTATGGATGAGATATTAATTTAGTTCCATGACAGCAATCACTCTGAATCATTACTTTGCTAATTAAT----AAGAAATGATGGCTGACAGAGAGCTGTAAACTCAGTAATGTGCTAAGTATGACCGGAAATAAGATTATTAGGTGGAATTTAAATGCTTGGCCTATTATTATCGCAAATAATTTACAAAGGGAAATGAGATTAAAAATACTCACCATAGCTTAGTTTAGAAAGCAATGTTAACAGACCTTTTC--TGCAATTTATAGTCCGTTCAAAGAATG--GGTTTGGCTCCCTATCCGGAGGTGGCATGATTTAAAGGTCTGCTGTACCCAGCATAATACATTTTGATGCTGTCACTGGGGCAGCACAACATTAATTCTGTCCAGCTTTCTGAACACTGATGGGTATGAAGTTTGGTAAGGGAGGGAGGGTGGGGGCTGACATGCTAGCCTGTCTCTGGGGTTTCGATGCTGGCCTCCATGGACAGCTACACAGGCTG---------------------------------TGAACTCAGCATTTGCTAATTACAGCTTTCATCCACTCCTGTCCTTTTATTTGACTTGCAATGAACATTTTGAATCAGATTCTT
s HiC_scaffold_1 139664953 1506 + 233722169 aaaacTGTAACTAGGACAAGAACCAGCTAGGTTGAC-CTGTTTACTGGATTTGGGGATGT-TCTGTC-CAAAGGCCACAAATGTCCCCAAAGAAAGAATACTGCCTTTGCCTTTTTCCAGAGCTCTCAACCTTT--AAACATACTCCTTTTCTTGGCATTGAGT--------------TGATATTCAGGAAATGTTTGAAGAATAGAGTTAAATTAA---TGGCTATCCAGTGTCTAGGCTGTTCTGCAGTTGGTTGCCATCAGGGACCTTTTGGGGACACCACAAAGCatgtaaaagaaaacacttttacaAGAGCCCCTCCAAAATATCTGTTTCAGAGCTAAGAGTCCT--ATCCAGCCACCTATGTTCTGCTGTCCCCATTTCTTGTCTTTGTGGCCTCTTTAGAAAGACTCCAGCTGCACACTTTGGAAGCCCATGGCATAAACATTTGTAGGTCTGCATGGAACATCAAGAAGCTGCA----ATTGCCCAGCTCCGATGAAATGAAGAGCCACATGAGTCCCCAGAACC-TCACCCTGCCTCCCAGTTCAGTCCCTCTCAGAGGGTGCCGTAACATCTCAGAATGGATCATTGTACCATGTGAGATGGAACGCAATGAAAACACCTAGTGATTGGCAAATATTGGTCAACTCATGGCAAAGCTGGAAGAAACAATAAGCTTCCAGGAAGAAACAGCACAATATGTTTGAGTTCTACTTCATAAAATGTCAGCCACACAGATAGCATTACCATTCCACACCTGTCTGCTGT-GGGTGTCTGATTCTGCATGATGGACTGCTGCCAAGGAGGAACTGTTCCTGTTACTTAACGCTGGCAGCTTTATTAATGCTCAT-AGCTAATAATTCTAGCAGAATCAACTCTTTGGTATTCACGATACCTTTGAGATGTCCTTCACATTCTGGATGAGATATTAATTTAGTTCCATGACAGTGATCACTCTGAATCATTACCCCACTAATTAATACTCAAGAAATGATGGGTAACAGAGAGTTGTAAACTCAGTTATGTGCTAAGTATAACCGGAAATAAGACtattagataaaatttaaatgctCGGTCCA-AATTATTGC-AATAATTTACAGtggaaaaggagattaaaaatacaCACCATAACTTAGTTTAGAAAGCAATGATAACAGATCTTTTCAGTGCAATTTATAGTCCACCTAGAGAGAGAAAGGTTGGCTTCCTATATGCATAGGGCATGATTTAAGGGTCTACTGTCCTgagaataatatattttgatgcTGTCTCTGGTGTAACGTGACATTAATTTTCTCCAGCTTTCTGAACACTGATGAGCATGAAGTCAGGTGAGGTGGAAAGGG-AGGGGCTGGTGTCCGAGCTCCTCTGTCAGAACGGGACACTGGCCCTGGCTGAGACTGAAACAGTGTGGCCACCAGTGATTACTGTGCCCCTCTCATAGCCTGAATTTGGCATTTGCTGATGACACTTTTCATTCGC-CTGGTACATTTTTTGGG--ggtaataaaaattttgaatcaaTCTCTT

a score=24237
s chr3           152837599 795 + 160039680 GGCAGCACCCTTCTGAAAAGTCCTTGCTCAGAGTGTCTTGGGCAGACAACTGCTGAACATTTTCAGTGTCAGCCGAGTTGCAGAAGCCCAGAGCTAGATGCAACATATGGCATGTTGACATTATCTTAATTTCCTTTTTAGCATCATTCCATACATTGTCTCCATCTGATCATACTAA--GTCGTGAGGAACTG----TGAATAAGAGAAATGACAAGTTAACTCGCCTTTCATTTGTTTTCCATAATAAATGGAATATTTCCTTGAACACTTAAAGCCATTAACATTTCAATTTATTCATGCTTTTTCTTCCTGGCATCCTAATGGCAATATTACATAATTATATCTGCTCTGTAGCCATCAGTTTTGATGGC----AATGCCTTGCATAT--CTTTTGTTAGACTGTTGATAGAGAAGGCAGCTTGCTTTTTTTATAGCATTCCACCCACTTCTTGAACCTCAATTGTCAAACAGGGAAACAATGTCAGTGAC--GTAAGTGATCAGGAACTGGATGAGGACCCAATctaacacattctgtactcactacatacaaggcactgttccagacactccacatgtgttagcttacttaatccacccacaacactttacagtggattctgtt---atcaacacctccatttctataaatgaggagggtgaggcagagagagatgaggtggcttattcaaggGTGCTTTAGTTTATCCACACTGGGCTTGGACTTTGCAGTCTGGACCTGGTGAAAGGATACCTTTATGTTCCAGGTTTCTCTG--TCTGTGCCTTTCTTTCTCCTGTGTGACTCAG
s HiC_scaffold_1 139669376 733 + 233722169 GGGGGGACCCTTTGGAGGAGTTCCTGCTGATAG-ATCTCGGGCAGACAACTGCTGAACTTTGGCAATGGCAGCTGACAAGCCGAAACCTGGAGCT-GTGGCAACATATGGCACAGGGACATTATCTTAATTTCCTGGTTAGACTCATTCCATAAATTGTTTCCATCCTACTGTACACATAGTCAAGATGAACTGAGTCTGAGCAAGAGAAATGACAGGTTAACTCGCCTTTCAT-----------AACAAATGGAGTATTTCCTTGAACACTCT--GTCATTAACATTTCAATTTATTCATGCTTTCTATTCCTGGCATCCTAATGGCAGTGTGGTCCAATTATATCTGCCCCACAGCCATCACACCTGATGTTGGTAAGTGCCTCTCCCACTGCCTCTGCCACGCCGGGGGTAGGGGAGGCCATTTGC-TCTTCTAAAGCATTCTACCTA-TTTTTACACACAGGGTATTAAGCAGGGAAACAATGCCAGCAGCAAGAAAGTGGCGAGGAACTGGGTGAGGATCTAAGTT-ACGTCCCTCATGCTTGCCACCTTCCAGTCTCTGTTCCAAGCCTGTCACATGTATGACCTTATTCAA--------------TTTGCAG-----TCTGTTACCATCGTCACATCTGTGTCTATACACGAGGC-GCTGAGACGCAG----------------------------------------ATGTGAAGCTTTAACCTTGCAGTCTGGCCC---CGCACAGGTCTCTCTGTGAGGTGCGCTGATCTGCATCCCTATGTTTCCTTCTCCTCTGTGACCTGG

a score=102885
s chr3           152839115 4909 + 160039680 [encoded data, 5529 characters]
s HiC_scaffold_1 139670447 4945 + 233722169 [encoded data, 5529 characters]

a score=4421
s chr3           152840129 103 + 160039680 GGAATCAATCCTACCTGCAGAAGTCTGGGGGCACCATGCCGTAAACATCGATCCTGTCACACAGCTCCAGAGCAATTGTCATGGTGAACCAGCCAGTGCTCAG
s HiC_scaffold_1 187044673 103 + 233722169 GGCAGCCACCTGACCTGCAGTAACTGTCGCTGACCATCCCATAGACCACGATCTCCTCACACAGCTCCAGGGCCAGGATCATGGTGAACCAGCCAGTGCTGAG

a score=5986
s chr3           152840138 128 + 160039680 CCTACCTGCAGAAGTCTGGGGGCACCATGCCGTAAACATCGATCCTGTCACACAGCTCCAGAGCAATTGTCATGGTGAACCAGCCAGTGCTCAGCCAAGTGTTGGAGATCTTCCTGGAAGGAACAAGG
s HiC_scaffold_1 187022626 128 + 233722169 CTCACCTGCAGTGGTCAGGGGGGACCATGCCATAGACGTGCACGTGGTCACACAGCTCCACTGCGATCACCATGGTAAACCAGCCTGTGCTCAGCCATGAGTGGGACTTTTCCCTGTGGGCAGAGAGG

a score=39861
s chr3           152846254 1379 + 160039680 CTGTACCTGTCTTTGCCAGTCTCCTGCTTGAAGAGCTCATCGAACTGCAGCATCCTGTGGCGCGTGATCATGAAGGCCTTCAGCCGAGGCAGCACTTGGCTAAGGAGCTGTAGGTTGTTGTACGCCTGGCCCTTGCCATCCCGGCGCATGTAGCTGCTGGGGCCCCAGAAGATGAACACGGTGCCCTGGCTCACATTGAGCAGGTCATGGCGGTTGCGGAGGATCCTCTGGATGCTGGAATGTGCGATGACCCGCAGGCTCGTGCGGTTGCCCACGTCAAGCCCATAGCCTCGGGTGGGGGCATCATTCATGCGGATAACACACTCTGTCTGGTCGATGTGGGGGCCCTGCTGACTACGCAGCAGATGCCCTGAGCTGGTCACCAGGGCGCAATCCTTGCAATGCATTTTCAGGGGCTGCAAGAC-------ACGAGGAGGAGAAAGATGGCATCAGCCACAGGATTTACCT---CCCTAGGCATCACTAGGCTCATCTCTCCTTTTAACACCTACCCCACCCCCAACATCACCAGGTTACATCCCTGTCTTTAGAGAATGTCTTCTCCCTCTTTCTAAATGCTCTTCCGACCCCCTCAACTTGCACCTGATCATATCTGGTCCATTGCAACTATACGGACCCCCCCTTTCTT---TAAAACTGCAGATAAGAGGCTGTTAGACAAGGGAGAAGG--GGCTGGTATTGAT-------CTGTCACTG--------GCTATACTTAGATACCAGTGTGGACATGTGAAGCCAGCGAGGTGAAGACTGTTGCATGCTT--AGTT-----AGCTTAGAGATG----------------------------GGAAGCCATGAAGGCATACTTTCAAAGCTAGGTCTTTCCCAATCCAAAGCTGGCCCCAAGGCAAAGCAAAGTCTCTTCTGCAAATTGTGTGA---CTGCGTTTGCAACTCTC-ATTCATCTTATTCCAAAGCTAAGCGTTGTCAAGGCCTTCGGATGCTGGGAGAGCATGCTGACCCTTAATAAAAAGTACCATTCAGGAATCACGGGAGCAATGACACGCAGA---------TTCAATACTGTAACTTTGAAATAAAGAACTGAGACTATTTTTCTCATGTAAAGGCATAGGGTAGGACAGAAACCGCAGCGTCTGTTTGCATTTATATA-GTAAG----GTCTCAAGCTCACAGCC-----TCAGACTCTGGAACTG--GATTGCTCAAATTCCTTTCTGAAAACGAACTCCCATGACGCCCTGCCCGGAAAGCCCACGG----------AGACAACTTTGCCGACAGTGCTCAGTCGAACACCTTGAACCAATGATTTTCTTT---AACACCTAAAAGCTAACAACTCTAACATGA-CCTGTTCATGTTTAAT-GGAAACATCTCTTCCTTG---TTCTAAGATAATGAAATTAGAGCCTGAGGCCAAGGCCAGGAAGTTCGAAAGAAAATGACAATC
s HiC_scaffold_1 139677902 1357 + 233722169 CTGCACCTGTCTTTGCCTGTCTCCCGCTTGAATAGCTCGTCGAACTGCAGCATCTTGTGGCGCGTGACCAGGAAGGCCTTCAGCCGCGGTAGCACCTGGCTCAGGAGCTGCAGGTTGTTGTAGACCTGGCCTTTGCCGTCGCGCCGCATGTAGCTGCTGGGGCCCCAGAAGATGAACACGGTGCCCTGGCTCACGTTAAGCAGGTCGTGGCGGTTGCGGAGGATGCGCTGGATGCTGGAATGCGCGATGACCCGCAGGCTGGTGCGGTTGCCCACGTCGTGCCCGTAGCCGCGGGTGGGGGCGTCGTTCATGCGGATGACACACTCAGTCCGGTCAATCTGCGGGCCTTGCCGGCTGCGCAACAGGTGTCCTGAACTCGTCACAAGGGCACAGTCCTTGCAGTGCATTTTCAGGGGCTAGAaggcagaggagaggaggaggagaaggggagggtCAGGAAAAAGGATCACCTGTCCCCTGGGC-CCAGGGGGTT-------------------------ACTTCCAA---CCCCAAGTTAAGGGCCT----------------CTGTCCCTCTTTCT------------GTCCCACTAAAGCTG---------------------TTGT-ACTTCATGGATCCCTACATTATTTTCTAAAGCAGT-GACAGGAAAC-actggaggagagagaaagacagctgACGCTGATTGCTGAACAATGGCTGGGGTCTTCGCTGTTCCTAAGTAACCATCTAGACACCTAACATC---------AAGGTTGTTTTATGGATAAAGTTGTTGGAGCTTAGAGACGCTAAGAAATCTGCCCCAGGATGAGTGGCTGGAGTGATGGCGTCACACTTCCAAAGCTAGGACTTTCTGAATCCAG---TTTCCTGAATTAAAAGTCAGAACTATACAACAAATTGCCAGGACTCTGCTTTTGACCCTATCAATTCACCTCAC----GAGGGAAGCACC-------TATTAGTATACTGG--ATTCATTTTTAGCCCCA--AGTAAGCATTATGGAAGAATCAGATGAGAAGAGGCTTGCAGACTGTAGCCTCTCAATGCCATAATTTTGAAG-GAAGAATTGGGATTATTTCTCCCAGTTAGGGGCAGA------GACAG-----GCTGCACTGGCCCATGTTCATAAATGTGAGGGCAGCCACAAGTTCAGAGCCATGGAGCACATCGAGGAAGTGCAGCCTGGTC---CTCCCTTCCGTGCCTGGAGGGCGGTG--GATGTGCCTGG---TCACATGGGGTGAACCAAGGACAATGCAACCAGCAGGGCTCAGTTCAACCCCTTGAACCAAGGCTTTGCTTTCTGAACACCTACATTCTGACAA--ACAACATTCTCTTGTTCTTGTTTAACAAGAAATATCTCTTAGTGGCCACTAGAAGATAATGCAATGAGAGCTTGCAGCCAAAGCCAACAGgtacaaaagaaaatgacaacC

a score=10992
s chr3           152846256 436 + 160039680 GTACCTGTCTTTGCCAGTCTCCTGCTTGAAGAGCTCATCGAACTGCAGCATCCTGTGGCGCGTGATCATGAAGGCCTTCAGCCGAGGCAGCACTTGGCTAAGGAGCTGTAGGTTGTTGTACGCCTGGC--CCTTGCCATCCCGGCGCATGTAGCTGCTGGGGCCCCAGAAGATGAACACGGTGCCCTGGCTCACATTGAGCAGGTCATGGCGGTTGCGGAGGATCCTCTGGATGCTGGAATGTGCGATGACCCGCAGGCTCGTGCGGTTGCCCACGTCAAGCCCATAGCCTCGGGTGGGGGCATCATTCATGCGGATAACACACTCTGTCTGGTCGATGTGGGGGCCCTGCTGACTACGCAGCAGATGCCCTGAGCTGGTCACCAGGGCGCAATCCTTGCAATGCATTTTCAGGGGCTGCAAGACACGAGGAGGAGAA
s HiC_scaffold_1 187025459 425 + 233722169 GTACCTGTCCTTGCCCGTCTCACCCCGGAAGAGGTCGTCGAACTGCTGCATGCGGGCGGGAGAGACGGCGTAGGCCTCCATGTTGGGGAACGCCAGGCCTGCCCGCTGGA---TGACGCGCACCAGGCTGCCCTGCGGCTTC--TGCATCTTGCTCGGGGGCCCCCAGAAGATGAACACGGTCTCGGGGGTCCGGTTGACAAACTCCTGGGGCCTCCGCAGCACCCGGAATACGCTGGAGTGGGCCACCACCCGAAAGGTGGTTTTGTTGCCTACATCAGCCGAGTAGCCCGTGGTGGGTGCGTCGTTCATGCGGATGGTGCACTCCGCTCGCTCAATATCGGGGCCCAGTTTGGTGCCCAGCAAGTGGCTGGAGCTGGTGACAATCACACACTGGTGGCACCGGGAAGGCAGGGTCTG--------GGGGAGGAGGA

a score=8296
s chr3           152846258 440 + 160039680 ACCTGTCTTTGCCAGTCTCCTGCTTGAAGAGCTCATCGAACTGCAGCATCCTGTGGCGCGTGATCATGAAGGCCTTCAGCCGAGGCAGCACTTGGCTAAGGAGCTGTAGGTTGTTGTACGCCTGGCCCTTGCCATCCCGGCGCATGTAGCTGCTGGGGCCCCAGAAGATGAACACGGTGCCCTGGCTCACATTGAGCAGGTCATGGCGGTTGCGGAGGATCCTCTGGATGCTGGAATGTGCGATGACCCGCAGGCTCGTGCGGTTGCCCACGTCAAGCCCATAGCCTCGGGTGGGGGCATCATTCATGCGGATAACACACTCTGTCTGGTCGATGTGGGGGCCCTGCTGACTACGCAGCAGATGCCCTGAGCTGGTCACCAGGGCGCAATCCTTGCAATGCATTT---TCAGGGGCTGCAAGACACGAGGAGGAGAAAGATGG
s HiC_scaffold_1 187047084 443 + 233722169 ACCGGTTCTTGCCCGTCTCGTCCTGAAAGATCTGGTCGCAGTGGGCCATCATGCGCTCGGTGAAGGTGTAGACCTGTAACCCCGGGTACATCTGCGTGAGCTGCAACAGCGTGCGGTAGGTGCGGCCGCCCAGTGTGCGGTCCATGTGCCTGCCCTGGCCCCACACCACGTAGAGCGTGTCTCGGGCCTGCTGGAAGTAGTGGGAGTAGTTGCGCAGCAGCAGTGGCACGCTCGTGTGCGAGATGACACGCAGGGTGCTGCGCCGACCCACGTCTGCCTCGAAGCCCACGGTGGGCGCCTGGTTCATGCGCAGCACACATTCGGCACCGTCGATCTGGGCACCCAGCCCAGACCCGAGCATCTGGCCGGAGCTGGACACCACGGCACAGCTGCGGCATGGCTCCCGGACCAGCGGCTGCAGgatgaggcagagagaaaggggg

a score=43698
s chr3           152853036 4034 + 160039680 [encoded data, 4427 characters]
s HiC_scaffold_1 139681668 3814 + 233722169 [encoded data, 4427 characters]

a score=4935
s chr3           152863105 153 + 160039680 ACATGGGGCTGTATCCCCCCTT--CTCTGGGGAGTCGTGAAGGTTATCCTGCTGAACCCCTCTCAATGACACCTCCAGAAGTCAATGCCAGGGCTGGAATGAGGCCCCTGAGACAAATCAATCCCCGCTCCACGCAGAGACAG------------GCACGCCTGTGC
s HiC_scaffold_1 139701020 167 + 233722169 ACGTGGAGCCAGAGCTCTACGTGCCCCCAGAGAGTCACTAAGCCTGGCCATCAGAACCCCTTTCAGTGACATCGCCGCAAGCCGGTGCCATGGCTGGATTCCGGCCCCTGCGACAAACTTGTGCCAGCTCCGTGTCAAGTCAGCATGCCCAGGGTGCACACGTGTGc

a score=43347
s chr3           152865154 1194 + 160039680 ATAGTTTTTGTGCATTTATTTTCCATAATATATACAATTGGAT-TGGAATTTTAAAATCACAATATAAAGCACAGCCAGTTTTGTG-GAGTGTTGCTGGTCTGCAGCACGGCTGGACTGAAGCA----AGAGAAGAACTTCCTT----AGCTCTGAGTAAACCAGCTGGTGCCCATCA-------CTAGACTGTGTAAAGGTTTAGACTCCTAGAAGTCTAT--TTTCTGGATGCTGCCACTT------AAAAGACAGAGACCCTAACAGTGCCCC---AAGCGAAAAGTGCACGGCACTTGCTTTCTAT---------CTTAAGGCACA-ATTTCTCCTGAGAAA-TCAAAACTTTTCCTAAAATATTGTTTGG---------AAAGTTTTAACTCCAAGGCATGTGTTAATCTGAG--GGTTATGTTGTGTGCCTGTAAACGTCTCAGCAGCTCATCTT-CCAGGGAGAGG--CAGG-GTGTCA----GCAAGGTGTCTGCTTCAGTGAGGTGTCTGTAGCTACCT-TAATTTTCTGTTTTTATGGACGTGGTGGCAAATGAAAGCTTTCATTAGTATAATTAAAATTCCACTCTCCTCAGAAGAGACAAATGATCCACGCTGAGTTTCTAGGAACTGGCTACAGCCCAGATAGCACTGGGCTAGGTGTGTGTCTTATTAGCTGGAGGGAGAGAGT-------------ACCAATGG---GGGTGTAGCTCGGTCTGAAGGAAGTGAGTGAC-------TGTCTGTATATAAAAGGCATAGATATTCTTATTAGGAGGTCTGATTAC---GATCCTAAAGTTTCCCTGAAGCCTTCTGACACGGGTGAGAGGCACAACCCCGTAAATTGTCAGCATATAGAA-GCTAAGATTTAGAAAGAGGCTTCTACTGTGCATCCCATAAAATGTGTCCCATGAGGAAGATTAGTATCAATCACAGGCTTATTGGAGAGCGAGATGGGGTCCAATGATAACCTGGCACCATCAACTAGAGTAATGGTCTAAGAAGCAAAAGCAATCAGAGAAGAGAATGGA--ATCTGCACAGAGAGACAGAAGTAGAAAGCC-GGGTATAATGGATCACACTGATGAACAGGCGCTGTTGTGCAGCACAAAGGCAGGCGTGAGCGATGCCGCTCCGTGCACAATGGATACGGCCAACCACCCATCTTCGGGATGCCTCCGGAAACAGACCTGCCACCTTCAGAATCCCAGCTGCACACA--GTGGTGCTAAACTACAATGAAGTCATTACCAACCTGAG
s HiC_scaffold_1 139711694 1273 + 233722169 atagttcttgtgtatttattttctgcaGGAGACATAACTGGATCTGAAACTGTACATTAAAACAATAAACCAGAATCAGGTAACTCCAAGTTTTACTGGCCTGCAGTGTAACCATA-TGAAGTATAGAAGAGAGAAGCTTCTTCCTTCGACTTTTATGCAGCTAGCAAAT---CATAAATATAGACTGGGTTGCTTCAAAGTTTTGAATCTCATAGGCCTGTCTTTTCTGGACTCAAGCCTTCCTTGCAAGAATACGCTGAATCCAATACTGCTACTGTAAGCACACAGTGCATTGCCTCGGCTTCCTTGGCCAGCACATTTAGGGCACACATTTcacataaaaaaaccaaaacttttcacaaaatattctttggtctagaaaaaaaaattccatctgGAATTATCTATTACCCTGAGAGGGTAacatt-tgtatttataaatttccTAAGAGCTCAGCTTTCCTGGGAAAGGTTCAGGTGTATCATAAAGCAAAGCTTCTGTTTCAGTGAGGTGTTTGCAACCActtctaattttctgtttttatggacTTGATGGCAAGTGAAAGATTTCATTAGGGTAATTAAACCACCACTCTCCGCAAAAGAGAGAAACGATGCATGCTGGGCTTCTAGGAACTGGCCACGTCCCAAATAGCACTTATCTAGATGCGCAT-TTGTtggctgggaaaaaaaaaacaaaaacaaaaaaacctacagaCAGGGTGTAGCACAAACT------ACTGAATGGCATGATAGCATCTCTGGATGAAAGGCATTTGTATTCTTATTAGGATGTCTGATTACATGGTTCTCAAATTTCTCCTTAAGCCTCCAGAGATGTGTGTGAGTTGCAACCTTGTAAATTGTCAGCACATAGAAAGCTAAGATTTAGAGAGTGGTTTCCACCATGCATTCTATAAAATGTGTCCCAAGAGGAAGATTAGTATCAATCACTGGCTTGTTGGAGAGGGAGATGGGATCCAATGATAACTTGGCACTATCAACTAGAGTAATGGCCTAAGAAGAAAAAGCAatcagagaggagaaaggaatatctgcaaagaaagacagaagcagaaaattagagTGCAATGTATCGTGGTGATGAACAGGAGCTGTTATCCGGGACAAAGGCATGTGTGAACAATGCAGGTTTTCATACAATGGATACTGCCTATTGCTTATCTTAAGGAGAATGGAGGAGACAGAGCAATCACATCTCACAGCTTGACTGTAGATATGGGGGCACCAGGATGTAATGAAGTCATTACTACTCAGAG

a score=22961
s chr3           152867567  977 + 160039680 taggttgcctaggctggtctcaaactcatggggactggtgatcagcctgcctcaccttctctagttgttgggattctggtcacatactaccatgctt-ggatcaaagaacgttcaacaaccactgactga-gtcaacagggtgtccaggctgg--tttccagcagaaGGGAATGCACACCCTAAAGGCTGCAATTGAAATCAGGACAGACATTTCTGGAA-CCTTCTACTACTTATAGACTACAGAGAACCAAGTGCGTAGGCCTGACTTGTCCACAGAGCTGGGTCACCTGCAAGCTCGGTGTGAAA--GTTCCAGCAGGG-----------------TGGGGCTGGC---------TGACGCTCCAGA-TGGTCTG------------CTCAAACTGCT--TCTGACTCGCT-------------ACTCCTACACTTATAAAGATGCAAGCTTCCATAACTTCCGTTCTCCCTTTGGAAGCAATTTCCATCTCAGTGTCATAAGAATGGAAAC--AGGAGAACAAAGCTTA---------------CTCCTGTCGAGTGTCACC---------AAGCACTTCTGTGGTGACAGCAAACCCTATGTCCCCTCTCTCCACTCAGCTGACAAAGCAG-ACCTCTTTCTTCTTTCATAGGTCCTATGTGGAGAAAATAACACGCCTTTCAATGTTCTGTGACACCAAGAT-----------------TGCCCCTAATAAATGACATTGGGAATGTCTGGGTGGATCCGCCCTCTGCCCTGTCACCCAGAGGATGCAATTTCTACACAATGGAACAGTTTAAGGAGGGGTGGCTTGCTCTCCTCCCAGAAGCTCAGGAGAATTAATGTGGCTTCACTG-TTTCCCGGGGGCTTTGAAGAAGCCATCTGTCCAGTTGGCAGAGCCAGGGCCGCCCAAGTCTTTTCTTAGCCTGCGTCCCTGGCTCCCTTCTGACATGTCACACTCATCTGTCAAGTGATCTCTTTGCTGTCCTGTAAGTCAGGGTGGCTCTGAAGTCTCTGCCTTCTGGAAGCC---TGTAAAATCAGACATTAGAAAGTGATAGGGGAC
s HiC_scaffold_1 139714817 1053 + 233722169 tatgttgcccaggctggtctcaagcttttGGGCtgaagggatcctcctgcctcagcctccc-agtagctGAGGTTGTAGCTGTGCATTACCACATGCAGGAGGgaagcacatttttaaaacatggccCAATGCCATAAGCACATCCAACCTGGGTTTTCTAGAAGGC-----TGAACCTTTGAAACACTGTAATTGCAACTGGGCAGGAATTTTCTGGAATCCTTTTGCTATTTA--GGATATTAAGAATGAAAGATGCAGGCCTGACTTTTCCGTAGGAGTAGGCTAATTATGAATTCTGTGCAGAGAGGTTCCTGCACGGCAGCCTTCAGGATGAACTGGAATTGGAGAACCGAGATGGTACTCCAGAATAGTTTGGGGAACTTGTTGCAGGAACTGCCAGTCTGAACCACTTTCAAGCTGCCTTCTTCCTGTAACACTGAAGATGCAGGCTCCCATGGTGACAGCTCCTGGTTTT-ACGCATTGCACTCTGCCATGTGGTGAGAACACAgccgtaaaaaaaaaaagcctagcaCTGAAGAGCTGTCTCCTGTCCAACGTCGCCTGGGCTGCCAGGCGCTGCCGCGGTGGCAGCA----CTG---CCCAGCCCTCCACTTGGCTGGCA--GCAggagctccttttcttttctcgGGTCCTAGCCAGAGACAA----AGGCTTCTTAATGCTTGAGGCCACCAAGCTATGGGAAATACTACTTCCGTCTGTAACAA-TGGCGCTGGGAAGATCTGGG-GTACTTTTGCTCTGCCCTGTCACTGAGGGGATGTGATTTCCACACAAGGGAACTGTTTAAGCAGGGATGGCATTTTTCCCTCCTGGAAGCTTAGGAAAATGAATGGGGTTTCACTGCTTCCCCCAGTGCTCTGGGGAGGTGATCTGTCCACTTGGCAGAGCCATGGCTATGCTGGTCCTTTCTCA------GTCTCTGGCTCCCTTGTGAAATGTCATGTTCATCTGTTAAGTGACTTCCTCACTCTTTTTCAGGACAGGATGGCTTTGCAGGCTTT---TTCTGACAGTTCAGTAAAAAGGAAGACATCAAAGAGTGATAAAAAAC

a score=64554
s chr3           152868915 4004 + 160039680 [encoded data, 4504 characters]
s HiC_scaffold_1 139716660 4145 + 233722169 [encoded data, 4504 characters]

a score=24936
s chr3           152876377 1826 + 160039680 CTGAATCTGCAGATGTGGGACTA-----TACAGAGGGCACACTGTATATAGTATAGTCTGCTGCAC-------ACAGAAAGCCTAAAAATGATTTCATATGCAAAGTGGAAATAAAATATTATGTTCACATAACAAATAAAATAAAAACAAGCTCAATTAGCCTAAGATAgagttatgcaaattgcaaatgggagattgcactcaagttctgc--tccctaaactttccaaagctctggagtcacttagagtctggtataaaatagaagagcCTTGGCCGCATGCCTGGGGGACATCAGTAATGGCTCCTCTGGCCCTAGCAGCACGGGAACACTGTGTTATTTGGGGACCTAATGTGGTGGTGTTTTCATCAGTAACATTTGTGGTGGTGGTGGGGTCCCAATTC---TCTAGTTTGAATGTGTGAATGCCCTTGTATAAGCCAGAAGAAACAAAACACGTAAACAAACAAAGAAAATAACATATCTATGCCTCTTAATTCTGCCCTTAG----CAGCAATATGCCCAGCAACAGAGCTTACCTTAGCTCTGACTACCATTGTTCTATTGAA-GATACTTGGGGATGGCTAGCAGATAAGACAAAGGGCCA------------------------TCCACCTGCCAGGAAGTTCTACGGTGTTCTACCCCCTGCTTCTAAGAGGCCTGCAGCTGAGGCTCAGATACCAAGGTAACTTCTGTATCACTCTAACCAGCACGGGAGCGTGAGGAGTGAAGGGCTTTCTGCCTCCCCAGGGTC-CTGGCATCTGAGCAGCGTGCAGATTTCTTTGGCAAGACAGCAGCAGATCAGCATCCTTCTCACATCTCTTTT-----GGAACTG-TGAGGGGAGTCAGCTTGTCCCCAGGCTGCCGCTGCTTAGAAGA---GCCCAGGAAACCC----TGGAGGGGAGCTAGAG--TGATCTTTAGCATCTTGAAGGATGGGGGCTACTGAGTGTTCAGTCCATGTTCC--AGGTGTTCTAGACCCAA-ATTTCAGACAGTTGTCACACATGGAGCCTTCCAACAGAGGAGACCACAGGTCATGTGGCTCAGTGGACACTATCTCTGGATTCTGGT------TCAAGGGAGGAGGGAATGACACTCAGAGCTGTTAAGGTCTCCTTCCTGCATATCTGAACACCAAGATGGTGTGTACCTACACCTGGCAATGCCATCTCTCTGAACCGTGGGCCATCTGCCCACCTCCTGTTAAACAGCAAGTGGGTCCTAGCTTAGGAGCTGGAGAGGAAAGACACACAAACCAAGCCAACAGACTCATGTCAC----------GGTGATATGAAGAGACTGTGGTCACGAGCATCCAGAGAGAATATTTCCATGCTCTCAAT---------GTA----------GCCATCGCCACTGGCTGGCAGCCCCTTCACTCACTGCTTCTAGCTCCAGTCTAGAAATTAG----AACAGTAAAGGGTGAGGGGATAAAGGCCATTCTATTAAAA---TATTTTAGTATTTTCT---------------------------------------------------------------GCCATG------------------------------------------------------------------------------------------------AAGGAAATTGGCAATTCGTCCTAAGACAATAATCCTCTGACTAGGAAGAAA--------------GCTTTTGGTGGTTGGATGGATTT------TTCTCAGGGGGA--AGCTTCGCCTATAACAAGTCAGGAGGAGACATCAGAATCAAGGCTTGAAAGACAGCCCTGGAGAGAAAAAATCCCCAGCAGGGAGGCCAACTTCCTGTCACA-TGA--AGAACAAAAAGATGCCATTTGTC-----CTGATGTTGTCCTGATGCTGCTGCCTATGGAACTCAGCTGACAGCT--GCCTTATCACGTTCTGCC---GTCCTCCCTCTCCCCA----CAATTCCTCTATTCA-CTTCTGTC-CCAGTACAGAGATGAGCCAGGTTTCCCTAG---TCACCTGGAGGGGACATGTGAC-CCTCTCCTCCTCCTGTG-TCCTGGTGA
s HiC_scaffold_1 139722637 2030 + 233722169 CTGAACTGGCAGACGTGGAATGAGCAGATTTGGAGGGCTGACTCAATACTGCATTAGTTGCTgtatgtacaaaataaaaaattataaaactattgtttatgcaaaacaaaaataaaacattt--------------atataacaaaattaaactcAAGTAATCTAAGA--GAGTGATGTgaataaaaaa-gggagattgTGCACAAGCACTGTAATTCATAAACCTCAAAATGCTCTAGAATCATTTGGGggtatttataagaaaaaataac-tagGCCATCTCCTCACAGCCTATC-TCCATGGCTTTCTGTCTCCTTGCAGCAAGTGGACATGGAGGCGCTAGGGG-----------TGCTGGTTCCATCAATCACATTT----------TGCTTTGCCAAGTCCACTCCAGACTGAGTGTGTGGGTGACCCTGCATGAGGCAAAGGTTTCAAGGTGCATAAA---ACAAA-------ACTAGTCTATGtgtcttaattctgttttgaaaaatcaGTGTTTCTCGTAGCAAAAGAACTCTAATTAGCTCTAACTGTCATTGTCCTACTGAGTGACACTCCCAGGTTACTAGCAGGTCTGGGAGAAGGCTGAAGTTTCCTTCCAGTGAGGATCTGTCTACCTGCCAGAAAGTGGGAGGGTGTGCTGTTCCCTGCTttgcagaaatcaacacaaaaacGTCagacttaaaggaaaatgatcaaGCGTTCTAATCAGCACTGAGACAT-CGGGGTGAGAAAGCTTCTGCCTTTTAAGGGTCTCCAACATCTGACTGACACGTAGATTTTTTGGGGAAGACAGAGGCAGCTAAACTTCCCTTTCAAATATCATCTTCAGGAGAACTGGTGAATTGCATCAATTTGTCCTCAGGCTGCAATTGCTTTGAGAAATGGCCTACAAAATCCAATTTCCCAAGTAATTAGAGCATGATCTTTAACATCTCTAAGCAGAAGAGCAGCCAGGGGTTCAGTCCAGACCCCCTAGCTGTCCCAGAGTCACCAGGTGAAAAGATTGGTACACAATGAACCATCTGAGAGTGGACGCCCTGAGCCACCCA-TTCAAGGGACAGGCTCTCAGGCTGCCAGCGACCGGTCCAGGAAGGAGGGAAACCTTTCCAGAGAGGCCAAGGGCAGCTT-----GAAATTGCAATCCCTGACAGTCTGCAGCCACACCTGGagaaattattgttttaaatccCAGATCATCCTTCCAGTC---GCTAAATACTTACTGAGCACTGG-GTAGGA--CAGAGAGTGCAGCCTGCTGTGTAGAGAGAGTACCGTCACTTCACAGAGAGCCCCGGTAACATCCAGGGACT---------------CAGGGGAAACAAGTTAATGCTTTCAATAAGCAATAAGTACACTTTTAATGCTTTCACCA--AGTTGACaaccttgccattcaacttttcTAGTTGCAG-----AAATTAGGAAGAAAAGCAAAGGGGGAAGGA-----------TcacttaaaagtatattttagtattttctattaaaaaaaaaaaaaaggatccagGCATGgaggcaaacacctgtaatcccagcatttgagaggccgtggcagaaagatcaccatgagttcaaggccagcctgggttccataACAGAGTTCAAGGTCACTCtgtactacataatgagactgtctcaaggaaaaaaaaaggaattggcAATTTGTCCTAG---AAAAATTCTAAGAGTAGTAAGAAACTTAAAGGGACCTCAATTTTCACAGT--GATAGAATTATGATTTCCTCAGAGGCACAAGGATCACCGATAGCAAAGTAAGAGGTGAGACTAAAATTGAGGAGAGAAATACAGCCCTAAAGGGACATAACTCTGGGCAGGCAGATCAACTTCCTGTCACACTGATGAGGACAGGAAGATAGCATTTTACTACAATTAATGTTGTTCATACATTTCTGCCT------CAAAGTTTCCATTTCAGCCTCATT-CATTCTCTCTGGATCCTCTTTAACCCCAATCCCAATTTCTTTATTTGCCTTCTCTCACCAGCACCAAAACCGTGCAGTTTCTCCTGGTTATCATCTAGAGGTAGTGTTTGACTCCTTCTCTATTTCCATGCTTTTGGTGA

a score=50020
s chr3           152880017 2450 + 160039680 TTCAGACTAAGTGAATTACCCTGTGAGAAGCCAGTTTCCCAAGCTGTATGTGTGTAATTCAAAAGGCTATATATATATATCTCCATACCAGGTCAAAATTAAATGGAGTCTTGCCTTTTTAAGAACTGGGGCAATATCTGGAAAAGTCACAAGACAATGTCTGTGTTTAAAGGATTAAATTCCCTCTGTAAATTCCTTACTTAATGGTAAGTAGTCACTGGAGGCCAGATAAGACACACTACAAGGGAAATGTCTCTTGCTCGGCTCAAGTTCAAAGCTGGGAACGCCGCCTGTCTTCCGTTTGTTTAGGCACCCAGAGTGATACCATATGGAATCCAAGAGGTAATTCTAACCTTTTATTCTCTCCTACCACACTGGAGCAAGAGTAAATTGAATCGC--TGTCTGAAAAGAGCCAGCTGTGCGAGTTTACTTCCCTTTCATAGCCACTGCATCTAAGTAGTTACAAGAAAATGTTGCATGGAAATGATTCTAAACTAATTTCCATTCCACACGTGAGAATACCGCCTCCCC-CTGTAAGAGGCTGCCTGTTACTTATGCGGGGCAGAGCCTTCAGATGCTGTCCCCAGGTAGGTAATTCACACGGCGGAGGCTGTTCCATATTCTGCAGTGTATAATTACAAAAGAGAGTTTCATCTTCACACATTTCACACACATTAGTCACGGAACTTTCGATGCCGCTGGATTGCCGATGGATAACTCTGTGAGA--GTGGAGGATTTAAAAGATGTCTCTGGGAACATTCCAAAACTCTAAACTTAAGAA--TTGAAGTTGTCATAAT---------AACC-----CAGTATGCAAGCAAAA-------GAGCTAGGTTTGCTTTATCCATT----------TCTGCACTTCCTTCTGCTTGGTACTGAG-GTAACTCAGCTCACCGTCCTCTGCAAGGGCTTACTGTCACGGGGTCTACTGTAAAAAGGACACAGTTTAATTGTCATGAGGTTGTATTTT-----------------------AAATGCTGTTCACAGAGAACTCGATGCTAGAGACAACCTAAGACTGTTAACTCCAAACATAACTAGCATTAGAGATA----ATTTTATTTCTTTAGTGTAAAATAACAATACAACGTAGAACGTTGGCATAATGCCTACTGCAGAATTCAAAGGGTTGCCACCCTTTGAATTTAGCTGGCTGGGTCCTGCTTAGGAGCATCATAGTGGGTCAGCACCATAGAAGGCTTCCGTGCACATCGGGGGAGGGGGTCTTCCA------------CAGGCACTTTGCATGCAAGGTT--AGGTGTTTGGGACCAAAGCTAGACAGACTCAACGGCTCCCACAGTTATCCCTG--CAGCTCCTCCCAGCCTTG--AATCCTAAGC-CTTTGTGCCCTG----------TTTGTGTGATTGTCCCAGGC-AGTCTTCCATTTTCCCATCAAACACGGAAATCTACAAACTCTGACAAGCCTGCAGTAAAACCCAACCCCCATCATGGATTTTCTACCTGATTTTCTG-TCATTTCCAAGTTTATGTCGTCTCTTTTTGTTTCAAAGTCATCTATCATGAAACAAACAAAAATTCCTTTACTTTGCAATCTGTACTTTGTGGGCCCCTGCCTCTTCC--------------------TTCTCAGGCCATAAGAAT-------------------------CTCTGGGTATTCATGTGACATCCCTGGCACTGACCCCTCTGGAAACTCTG----------------ACATCCTGGTACAGATTCTAAAAGACAGGTCTCCTGGCAGAAGCTGCCTTTTCCACTTGCCCATTGGTGGTGGTCTCACCTGCTGCAGGGCCCAGGTATGAGTTCAACCTCACACTGCGGCAGGCTCTCTTCTCACTGGGAAGTCTGTGGAGACACTAATGCCAGAGCAAAGGAGGATAGAAAATCAGCTGGCTGGCTGCATGT---CCATC--TTCCCACCAGTGCTAGCCTGCGTCCAACTGTACAC-------------------AGCTGGTCCTGGAATTCCAGCCACCTGGCCTCGTTCCTGCCAGTAACCCCAGGGACATGCTTCCAAGCATATGTAAAGCATGGTTAAAAC-----------CATATAACAATAGTTATAAGTCCTTACGTTAAGGGAGTGGATGGAAAACTGTTCCCTTTGCTCTTTCTTCCACATAACCTGATTATTATTGTAGCTGCACACATAAAACCTTCTAATCACAAAACACAT---GTGA---AGTTCACATGTTCACATGCTCAGAACACT-CAGAAGGCATCAGATGGCAGATGTTTTGGGGGCAGGGA-CATGGCTCCTTAATGTTTGCCA-CTGAAAGCTTTATGCGATGGCTGGGACAGAATGGGCACCTTAACACACACTG-------TTGATTGAGAGAGGAAATGGAATGTCT---ACCTCATGTGATCCCACAGTTCACATACAGTGCCACAGAGGAGCCCTCAAAGCAT-----ATGCCACCTAAATTGGAGAACTGCAACTGGTCTAGACTGGAGTTACCCCAcatgcagaggttcaagact---tggccctgaatattagctatgtaaccttgaacCCTCATCTGTTAGGATTCAAGCCCCCAT---TTCTCTGTAATG
s HiC_scaffold_1 139728173 2500 + 233722169 TTCAGACTAG----ATCATCCT----------ACTCCCCCACACTGAGTTTGTATAATTCAAA-GGCCATGTA----------CATGCCAGATCAGAATGAAGGTAAGTCTTGCCTCATTATGAACCAGGGAAGTACCTAGAAAAGTCG--AGTTATTGGCTAAGTTTGAAGCATTAAGTTCCACACATAAATCCCTTACTTAATTATGGAAAAGCACCATGTTTCAGATAAAACACACTGCGAGGAAAA-ATGCCTTCCTATCCTCTATTGCGAGGCTGGGAAATCTTCCTGACTTCCATTTGTTTAGGCATCTAGGGGAAAACCACATTCAACCCAAAAGGTAATTCTAACCTCCT--TTCCCCCCACAATACTGGAGCAAGAATAAATTGAATCACGATGTCTGAAAAGAGCCAGCTGtgtgaatttcctttcctttcacagACACTAGATCTAAGCCGTAATGAAAAAATGCTGCATGGAAATGATTCTAAAATAATTTCcattccagatatgaacacactGTCTCTCTTCTGTAAGAGACCGACTGTTACTTACACAAGAGAGAACTTTCAAATACTATCCTCGGGTAGGTAATTCACAGCGCAGAAACTATTCCACATTCTGTGGTGTATAATTACAAAAGAGAGTTTCATCTTCAAACATTTCACACCTATTAGTCACGGAACTTTTAATGCCTCTGGGTTTTTGATAGCTTACCCAACAAAATGGTTCAGG-TTTTACAGAAGTCTCTCGGAAATTTT--AAACTctaaactttaaaacttttaacttCTAACAATgagggaaaaaaccaaaaacaatgcacaagtgacagaaaagtgaactaaattttctttttctggtgaaGAATGACTCTGCA-----TTTGGCTCAGCAGTGAACATAATTTAATGCTTTATTCATAGTCATAATAGATTGTCATTggatttaa---aagaataatatgtTTTATTCAGTACACGACATTATTTTTCTAACccctctttttccctttaaaatgtcatttctagAGTGTTT--TTATTGTGAT-ACTTATACTTCTTAGTTTCCAatgtaactgggattacagatacctGATCTTATTTCTCTAT----AGATGGAAAGAAAACTCTGAGTTCTGCCAT--------CTTCAA----CCAGGGGT-------------AATTAGTTGCCTGAATCCTATTTCTGAGGGGT-CAGGTACTCAGCACCCTAGGAAATCTC----CACTCCATGGGGCAGGGTCTCCCATGCATGTGTGGTCAGAAGCTTCCTGCGGAAGGTTTCAGGCTTCCTGGACCACAGC------AGCTTAATGATTGCTGCCATCCTCTCCGTTTAATGACGCCC--CCTTGGCATCCCTCAGCACCCTGTCACCTTCGCTCGAATCTCGGTGCCACTGTTCCTAACAAGCCTCCTACCTTTTCTTACAATCAGGAGCCACACGAAATCTCTTGTGTACTTATTGATGTCTCTCGCTCA----GATTCTACTTCCTGAGTTTCTACTGATGCGCAGGGTTAT-TCTTCTCATTGTGTTTTAAAGTCATctactttgaag-acagaaaaatccATTTATTCTGTAATCTTCACTCAGTGGCATCTCACCTCTTCCTCACTCTGCTTTAGCTGTAATCCCCAAGCTCTGCGTGTGACAGCTGATGGACCATCTCTCCTCCTCTGGAGATTCAGGTGACAAACCTCAGGCCAACCCTTCTGGACACTCTTTCTGTTAAAATATAACATATCCTGGTACAAATCTCAGAAGATTACTCTCATGCCTGAGGCTCCTTGCCCTTTTCTGTCCTCTCTGACCGGCTCACCTGCCTAAGTGT---AATATGCTTTCCACCTCACGCCTTGGCAGGTTCTCTTCACACTTGGAATTCCGTAGAGACACTAACcctggagaaagggaaaagacaaaggt-GCTTGTTGGCTGCATCTTTCCCATCAGCTGCCACAAACAACAGGCTCATTGCAACAGTACATGCTGCAGAAAGAAGTTTCaaactgttcctaaaatttaagACTCCTGGCTTTAGCTCTG------------------------CAAGCACGTGTGTGGAATGGTTAAAATCTCCTGCCAAACCTGAAGCGATGGTTGTTAAT-------------GTATGCATGAGCCACCAATCC--TTGCTTTTCCTCCCATTCCACCTG-CTAGTATCACCGCTCCAGGCAGGGTGGGATTTCAACCCTGAAAACATTCAGTGATTGAGCTTAGATGTTTGCACGTTCAAAGCACTGCTGCTGGCG-CAGAAGGTGAGCTTTCGGAGGATGAGGACCATCCCTCATCCACAGTTGCCGCCTGGCTGCCTTGTGCAGTGTCT-----------------TCAGTACATACTGACTCTCCTTTGTTGAGTGA------GGAATGACTCTGACCTTATGTGGGCACCAAATCTGCAGGCTCTGATAGAGAGGAGTCCCCCAGACATGGGAGAGGCCAGCTGTTCTGGAGAACTGCATCTCCTCTGGCTCGGGATTA----GAACACAGTGGTTATTGATCCAGTGCTCCCACAAgtcagctgtgtgactttgg---------cgAAGTACTTCAAGCCTCCATATCTTCTCCAAAATG

a score=66323
s chr3           152883095 3046 + 160039680 TTCTGACCATGTGCGCTTTTTCCCTTAAAGCTGACACGAAAACTAAGTGTAGTGTTGACATAGCCAATA---TTTGGGGTTTGAGCTTAGATGGGAAGAACATGTGTC-CCATAAGCCACTTGCATGGCCATGAGGCCATACATTTTACCAGGAGCTAGGTCAACTTTCTAATAATCTCACCTAGATATTGGGCCCAAAGGCTGGCAGAAAACAAGG-GAGACCATAGCTGCTTCAGTGGGCAATTGTCCCAAGTGCATCTTTCCTTAAA---CTCAGAACAGAATGGCTACCATGGTCTTGAAAAATTCCAGAGAATATGAAATCCCCTCCTACCCATGG--CCCAAAAGAACACTGCAGTGCTATGCTGATTCCTAAAATTTAACAC--AGGTC-CCTTGAGTTGAAAGCGCTA---ACGGGCTCACGGTTTGTGGTGCAGAC-CCGCTATCTCTCTCATTGGAATAAAACTGCAGAAAAAGGTGCTGATCTC-TCCTGAGAGCTGCACTCCCACCAGCT-CCAAGGGGTTTTAGGAAAGCCATGACC-CACCCTGGGCCATGTCATTCTGAGTGGACTTGTGAATGCTGGGGCCACAGAAAAATTCTCACCTTCATGAATAGAGCGGCAAAGTCATTTTTGGAAAGAGAGTCAGTGACCAAATTAATTCTTTTATGGAGCTGTCGGGTTTGATTAAGTTGTTATACCACATTTTAAAACTCATTAGCAGGGTCTATCAGACCATTTTGTAAGTGAGGTTTTTTTTTTTCCCTAGCATCTTTATGTTTACTGTCCTGGAAGAGGTTTCTGGTGTCAATCAAAATAGATGACAATGTTAAACCCTTGGCTTCGTAACATAATTCAGTCCTGGGTGAACCCCGCTGTCTCTGTGATATATGACCTTGCAGGATGAGGCTGATTCGCCTGCTCTCTTCTCTGATAAGAGAAGTATATTTATAACCACACCGT-GCTGCATATGTACTTCACACTGTGTGTTCCAAGCCGAGGTACTTTAATCATAAAGAGATTCTCCCTGTATTAGGTGTAAGTGAAAGAGAAAGTTTAAAAATAGTTCCTTTCTCTCATTCTCTCTTTTGACCAAGCCTTCCTCAAATAGGTTCTAAGTCAGCAAGCTTTTAGTGGGGGGAAAGTCACAATGGAAAACAGAAGGGATACAGCTCTCCTGCTCATGCCTAATGAAAGAAAGAGGAGACAATTGGAGGCATCTGCACAAAGCGGGCGTTCAAAGGGTGTCTCCCAGAACCGAAAGCTAACGAGCAACACAGTGGAG----AGCTGCTTAGCCACGAGGAGCAAGGCCCGG--AGAATTAGGCTTTACACGTTTCTCTAACCTTTAACAAATTCCTCAAGTGGAAATCTCAGAGATTTGCTAGGTAAGTCCTTACCACCATTATTGCTAGTAAAACAAGAAAAATATAAATAGGATTCAA-CCCTCATGTGGCCAAAGATTAGTGTAATGATAGTCTATATTTCTCAC-AGATTAATTAGAGAAAGCTGCAGAGAATTGTGATTTGGAGACAAGGGAGATGTGGTAATGTAAAGTGGGGTCCTGAGGAAGCAGTGTAAATGTAGGCGCATACGGTGTTCA-----TTAGCAACCATTGAAAAAGCT-TTGACATTTCCAATTCTTCTGTACAGAAGGTGGGGTAGTGAAGAAAAACTTCAGCATGGCTCATGCCTTTGAATTTGAAGCCGGCCAGACAAGTGACACAGAAGCagataaagtgt--cacagaggtaacaag----------------gagca-------------gctagagtttgcagggcatcctgagggagtgacatttgagatgcttcttaaaaagtgagtggga-------caagccagaggaaagagggcagggcgtGGCGCTTTGACAGGTCCTGGAAAGGGCTGAGGT-GCCCACTACCTGTGGGTGAGTAAGGAGAGAGAGATGGTAATGCATATGCATTGCCAAGCTAAGACCTTAAAGCATGTGGATTGCCAAGGACATCCGGGAGGTTGCAACTGACAAGAGGCTAGTGGGTACCTAGAGAAGGCAC-ACTTGCCTCAAAGCACTCAAATTAAACACAAGAACACCGTGAGGCAAACACAAGGGAGGTTTCAGACCTGGGTGCAGCAAACAAGAGAAAGATGGTGGGCGTTTTATT-TATTTGGTTGCTCAGAAAAGAGGGTGACAGGGCCAGAATTGTATGCTGGGAAAGGCTAATGGGCTGCAGGAGAGGGTAAACGCACGAAGGTGGGG----------------AGGACCTTGGAAGGCTCTTCAGTGTTCTTGGAAGACGATG-------CTAATAGGATGTGAGAGA--------GAAGGGCCAGAGGTAGAGAGAGCTCGGAGGCAAAGCTAAAAGGCATGG--TGATTTACTTGAAAAACAGTCACTGGAACTCCAGATATTGGGACAGAGTATCAGGGAAGGAAGGCAGAGGTGACTTGTCTTCACTGTGTACTTGAGGCCACCC--ATGTAGG------GTGTGAAGGGTGGTGATCTACCACTGG---ATAGCCCTGGGGAAAGTGACCCTGACACACTGCCAGGCATTGCTGG--TCCCTTTCACTGCATGGGACACTAGGGGGGGGGAACTGCGAATA---GCTTATTGTTGCTTCCTAAACAAAATATC--CCTACTAAACATTT---TGTTGTTAGAAAGCAATACTTAAGCCCACAGGATAA-GACTGGGGTCAAGGGTTAGGGAACTTGCATGGTATTGGGGGCCTGGGGGCTCTATGAGAAGAATGAGCTAA-----CAAAatgtgtacatttaagccgtctgtaa-------agttccatctgaagatgtcctgcagacatccagatgtacaatctaggagt------ccaagagctg-------------gattggaTTGTTACTAGAGAAGATG-CAAACAATTAATGCTAAT---------------------------------------GGAATGAAA-----------------AAGGAAACTCTTCCCAGTGGAAAGAGCAAGAATACC-------AAGATTGAACTAAGAAATGGCACGTTGAAAATAAATATGGAGAGGGTCC----TATAGTGGTGTGAGAATAGCAGAAGGCTATTC--AGATAA-----------------TGTC-TTTCAGATAATGCTCAGTGGGTGTGAGTTTAAATAACCCAAGGTCCTAGCTTGCAAATACGGGTATTTGCCATGTGAGCAT
s HiC_scaffold_1 139731787 3083 + 233722169 TTCTGACTATACGTAAACTT---CTTAAAGCTAACTTTAAAACCAACCCTAGTGCTGAGGTACATAAAAGAGTTTGAGATGTGCATTTGAGTAGATAAGACATGAATTTCCTTAGGTCTCTACTCTGGGCAAAAG--CTCACATTTCTGCAGGGGTCAAGACACCTTTCTAGAAATCTCCTCTAGAGTTTGGGCCCAAAGTCttccagaaaacaaagcaagacttTGTCGCCATCAGCTGGTTGTTGTTGTGAGTGTAATTTTCTTTTAGATTCCTGGAA----ATGACTGCTATAGTCTGGGACAATGTAATAA-----------------TGTTCTTGGATCCCAAA----TATAGCAGTTCAGTGTCACTTGCTGAAATTTAATACTCAGTTTGCCTCAAATGGAGGATGTTATTTGTGGACTCACAGTTATGAACACATAGGTCACATTCTCCTTCAT------------------GAAAGTGTGAATCTTATTCAACTGGTCACAATACCAGCAGCTATTGAGAGGCTCTGGGAAACCCATAACCTCAGCCCATGTCACGTCATCCTGCATGTAGTTGTGAATGTTTTGGCCACAGAGAAATTCTCACCTTCAC---CAGCTCAACAAAGTcatttt-ggaaagaaagaaaatgaccaaaTTAATTCTTTCATGGAGCTGTCGGATTTGATTAAGTTGGtatactacattttaaaactcattaaTGGGGCCTAACAAGGTATTTCATAAGTGAA-------TTTTTTGGTAACATTTTTACATTTACTGTCCCGGAAGC--CTTTTGGTGTCAATCAAAATAGATGACAATGCTAAATCACTGGCTTTATAACGTAATTCAACACTGGGCAAATTCAGCTGTCCCTGTGAAATATGAGCTTGCAGAA-GAGGCCAATTTTCCTGTTGCTTTCActgatatgaaaaatatatttataagcaCATTGTGGTTGTATGTATATTTCACAGTAGGCAT------------CATTTTATACA-----AGTTCCTTCTAATATTAT------GTGAAGAGGGAAATTTTTAGACTGTTCCTTTACCTCTCTTTATCCT----------ATTCCTCAAATAGATTCTAAGTCAGGAGGC-TCCAGAGGAGAGAAATTCACAATTAGAACCAGAAGGAAGATGGTCTCCCTGGGCATCTTTCATGAAAGGCAGAGGAGGCCGTCAGATAAATCTACACAAAGGCAACAAGCAATGAGGGTCTTCCAGAGCTGAAAGCTAAACA-TAACACAATGGTGAATTAACTGCTTAGATACAAGCAGTAGGACCCTGGCAGCATCAGGCTTTGGAAATTCCTTCAACATTTAACAACTTCCTTAAACAAAAATCTCAGGGATTCGCAAGATAACCACTCACCACCATTATTGCTAGTGGTATAAGAAAAGTATAAATAGAAAGCAAGGCCTTGTGTGACCAAACGATAGTGCAACACTATTCCACACTACTCACAAAATTCATTAGAGAAGGCTACAGTGAAGCATAACTCAGAGATGTGGGAGAGATTGTAATGT--TTTATGGTACTGAGAAGGCACCACAAATGCAGGCTAATAAAGTGCGCATTAATTTAGCAGCCACTGATTGAGTTCTTGCTGTTTCCAA---TTTTGCACTGAA-GTGAGATGATAAAGAAAAAGTACAACACAATCTGGGCCTTTGGGGTTTACACTGGCCAGGGAAAT-ACAGAGATGTAATTACCGTGCAGTGCAGAGGTAGAAAGAGTCCTGTGAGATCACGAGCACGGAACAATGGATGCTGGAGTTCACAAAGGCATATGGCAGGGAGCTAGCTGAGACATTTCTTAAGGTGTAAGTGGGGGTTCCTTAGAGACAGAAGAGGGGCCACAGTACATGG--------------CTGTGGAAGGCGGAGGTAGCCAACT-----------------GAGAGCAGGA---------------------GAGCTGAGTTTTT--------------------GACAGGTAGCAATCTGAAGGTGGCTCAGGGACAGCAGATATCTAGAGAAGCCATGACACGCCACATGGCATGCAGACTGGAACTCAAGGCACAAGGGGG-AAACACGTAACAGCTTTCAGG---GCACCCACCAAAGAAGAGAGAGGGAGTGAgagttttactatattttatttttt----aaaaggatggcAAGAGCAAAACTGTGCTCTGGAAAAGA-TAACTGGCATCAGTGAAGACAAAACG--TGAGAGTGGGTCCAACTGGAGACTAACAGGAATAGGGGAGGCTCTTCAG-GCTCTTAGAGGATAATGGGGGCCTCCGTCCGGAGGCAGTAGAAGGGCTGGGAAGGGCTGGAGTTGGACACAGTTAGAAGGCAGAGTTGAAAGACACTGAATCATTCATTCCAGCAACCATAATTTCAATGCCACATCTGGGGACCCGGAGCCAAGGAGGGAATGATGAACTG-CCCATCTTCACTATGGACTTAGGGCCACCTGGATGTGAGACACAAGGGAGAAGGCTGACGAT-TCCTACTGGAATATGGTTTT-GAGAAACTGATTCCTACACAAAAGAAGATactgttgattttccttttcttggaAGAAGTGCt---gattaaaaattatgaatattcatttatt-ttgccacC-AAAAATGATACCGtccaaataaatatatacaatttgttAGGAAACAAAAATTAAGCCTATAAAATGGTAAATGAGTTTGAGAATTCAGGAAA--GGATAGTGTGGGGAGGTGGGAAggttt---aaaataatgatttaggTCTTCAACATGTG--AATCTAAGATGCTCACAACACAGCTAGTT--------AAACATCCAGTCAGCAGCTAGAGCTTTGGGGTAGGAGTTTACAACAAAGAGCTGACCCAGAGAAATAGTTTGGATTTTCACTTGAGAAGAtgtcaaaaaattgaaagaaagaaagacaaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaagaaggaaggaaggaaggaaggaaggcctCCCCAGGAGAAAGAGTGGAACTACCAGAGAAGAAGATAAGGGTAGGAAACCcaagaagcaaaataaagatgggaagaggacagtttatgaaaattgaaaaaggggggggggcggtTTGAGGATAAAATGGTAAAGAACAGTTTGTCTTTTCAGACAATTCTCA--GAGTATGTGTTTAGATAACTCAATGCTGTAGCTTTCAAATCTAGGTATTTGTTCACTGAACAT

a score=16407
s chr3           152888020 758 + 160039680 ccatccctactctttgcccctttcagtcctaaaaagggtaaaggctccttgctatttataaact-tgagcactgaaatgtgccttgacttctttctctgagccctgaaaagatgctcatgtgcccagcagcccctttattaaactctctaatcatctaaattgagtgtgctgtcaggccggtttgctgccaggaAGAGATTAGTTCAGACAATAATTTGTTGCCAGTGACCCATTTTCTACTGG-CTGGCACTGACGAGGAGAGGGGCTGAGGAGCCTG------ATATCAGAAGAGGGGCGTGTCTGCCCAGGCACAGGTTGCTTTGCTTTGGAGTCTGCC-ATCCGCATGGAACCTCAGAGCTGGCACCGTGTC---CTTCCCCTGAGCATCTCTCCTCAACCACTAAGCAGAGAACCACAGAGAGAGCAGGAAGCTGAGGAGCTGCACGGGTTTC-------------TGACAGACGAAGGGACAGAACCTTGTGTGCCTAGATTTCCAGGT-AACTGCTATATGAATTCATGCCCAGAACCATCCATTCTGTGGTGTAGGGGTTCTACAGATCTAGCTGTCACACCGGGAGCAATGCCT-AGGCTGTAGGGACGGGATTCTCACATTGTCTCAGATTTGGACACCATAGAGGGCAGCTTCAGTGTCAAGAGAAACAGTGCTCAAGATAG--AGAGGACA------------------------AGAAGCTCCTGGTATGTGCACATGGCCAGGAAATAAAGCCTTCTGCAGTCTTCTCCACCCAGAAGCCAGGCAAGCAGATGGGAA
s HiC_scaffold_1 139735305 761 + 233722169 CCACACTTTCTCTTGGCTGTTTT-GGAGCTAGAGGAAATAAAGGCCCCCTGC-ATTTCTGGACTCTCAGCACTC-----TCCCTTGGCTGCTTTCCTCAAGTCCTGGAAGAAGGCTCAGAGGTGCACCGGGGTAAAGAATAGTTTCTCTA-TCACCCACACTGCGAGGGCTAGCTAGTAGGTT-GCTGCCAGGGAAAGATTACTTTATATGGTAATTTCT---CAGTGACTCATTTTCCCATGGACCAGCACTGA---GGAGGGTGCTTGAGAAGACTGGGTGGGAAATGAGTCAAGGGA-----------AAGAGCAAGCTGTCTTCTTTCAGAGTTCACCTGTCTGCACAGGAAC-CAACGCCAACATCATTTAGAGCATTTCCAGAGCATTTCTCCTTAGCCACTTAGCAGTGAACAACAGAGACAGC-GGAGGTTCAGAAGGTACACA--TTTCACCCTGACAGAGATGACAGATGGGGGGACGAAACCTCCTGTGTCTGGATATTCAGGTTAACTGCTAT-TGAGCTTATGCTCTGAACCATCAATTCTGTGGTGGAGAAGCTCCATAAATCAGCGTGCAATACCATGAGCAAGGCCCGAAGTTACAAAGAAGATATTCTTGTACTATT-----TTGGGCCACTGTACAGAGAAACTAAAGTGGCAGGACAAGGAATCTTCAAAAGCGTAAGAAAACATCCTTGTGGTGGAGGTGGGGAGACAGAAACTCCCGACACATCTACAC-------------AGCCTTCC-CAGATTTCTCTACCTGGGAACCACCCTAACACAAAGGAA

a score=25100
s chr3           152900465 866 + 160039680 atcttTTTATTA--TGTTCTTAAACATTGCTTTTTAAAATGACTATGTGTGTGTTCATTCATGTGCGTGCTCATGCTCTCACTCTCAATTGCTCACTCACTAGCGCGTGCATGTGCAGTCTATAAGGAAAGTGAAGTCATTAACAGACTCAACTATACTTTCTCTTTAAATAGCAACTTT-AATGCCCTATACCCCTTTATGCCTTTAGGACTTTTAGTTGCTGTTGAAAATAAAAATGCTTCATAGATTTGCTTT----TATTGAAGTTTCCCCTTTAGCATCTGCGTTATATAAACAAGTATTTGTTAAACCGAAGGAGATGATGTTGCCGTACACAGCCTCTGAGAACTGAATATGTCATCACGGTGTTTCTTCAAGTCTTCTTGATGGTTGCAGTAAGTGTGTGACCTTCCTGGGAGCTGCCTGGCATTGGGTTTGGA--CAGTATGGCTTCCCTCCCCAGGCTC--CTCCTAGCGTCTCTTTCAGCTCC-AGCTGCAGGGCTGGGACCAAGAGTGAGCACTGTTTTCAGACA--GACAGCCAGGGGCTCTGAATTTTTTATCATGTTTTCCTAAACC---TTCCTCAGCTCTCCCCCTTAGTTATTCTTCCTGTCTCTCAGCCTGTGTATTTATTTAGTTGCTCCAGCATCTTTGTCAGAGCCTACCAAATAATTGACTTTAAAAGAGCAGCCAGCTATTGATCTGCCTTGGTGGCTGGTTGAAATTTGCCTGATTTTAGACCTTCATTTGCCAGACGTCAGTTGTTTCCCCTGAATCATTTCACGTAGGCA-ACAA-CAAATCTTTATTCAGTGTCTCCTGGAGGTCAGCCTTTGCTCGAGGCACCTAGAGAGATC-----TTGTTCCTACATTCATGGAGACT
s HiC_scaffold_1 139754604 819 + 233722169 ATCTTTTTGttacatgcttttaaaaaatgcttttctcAAAACCAATGTGTATGTTTGTGCATGCA-------------------------------------------------ACAGAGTACA--------GAATTCATTCACAGAAACAACAATGCTTTCTCCTTAAACAGCAACTTTTAAAGCCACACACAACCCTATGC-TTTAGGTCCTTTGGttgctttcaaaaataaaaacacctagTATATTTGCTTTGAGTTACCCAGGTCTCCACTTTTAAATCTATGCTATGTAAACAGATATTTGTTTAAGTGAAAAAGGTGACATTATCGCATGCAGGCACTGAGCTTTGAATATGTCATTAC---ATCTCCTTAAGTCCTCTTGACTAGCCCTGTAAGTCTCTCCATTTCCTCTGAGCTGCTTGACATTTGATCTGGGATCACCCAAGCCGCCCTTTCCTGAATCCTCTCCTCCTGAATCTTTCAACTCCTTGCGGCAGCGATGTGACTAGAAATAAACACTGCTTCCAGACACGGCCAGCGAATAGCTCTGAATTTTTTATCATGTTTGCTTCAACCTTGTTCCTCGACTTGCCCTCTTATTTATTCCATCTGTCTCTCAGGCTATCTGTATACACGGTCACCCCAGCAACTTTGTCAGAGATCACTAAAGGA-TGACTTCAAAAAATCAGCTAACTGTGAATCTGCCTTTGTGGCTGTCCAGTGGTTGCTTTACTTTGGA----TATTTAGCCCTCATTGGTTGCTGTATGTTAATTAAATCACTTAAGTATATAACCAGAATTTTATTCAGC-TCTCCCATGAGTCAGCTTTTACCTAAG----CAAGTGAAATTCAATGCTGTGCCCACATGCAGGGAGATT

a score=13722
s chr3           152905300 1792 + 160039680 TGAGTCACTCTGATGAAAATGCA--AAGTGAGGCAGCAAAGCCGAAGGACACCATGGGTCTGGGTGTTTCTTTGATGCTGATTTATGGAGTTCATTACACAAA-GCATTGATTAGCAATACCTTTTTTCCAAACAAAACTTGATGAACAACAACAGTTAAAAATCAAATGCA-----GACCCTTTAGCTCTGATGACGTAGTCCTAGGCACCAGACCTTTATCTGTCTAAGTAGTATATCAGGATTTTATCCATTTAAAAACAGG--GAGACGGATAGGAA-----CCCGAGTTTAAGACTTCACAC----AGTTGGCATAGCATCT-ATCCAGTGAC----TACTTGTAGCT-ACTTAACTTGCCATAATCTTTA------------TCAAATCACCACCACCATCAACTTATAGATGCGGGTGACAGATTCTTCAAGTAGGAGGTGGGTTTAAAACCCATTCAAATCAGCTTTGTGTGCAAAGTGAGCATGACAGTATATAATGTATGTGACAGGTGTCAGGTCTCCGTGGGAGCTGCCAAGCCTCTGTCTGCGCCGTGTGGATCTCACTCTCGTCTGTATCTATAGAAATAGCTATCACTTACTCTTGCTAGGAACAGTGT-GGGATTT-ATTTTCATTGC---CCTTGTCTCTT------TTGATCACAGC----GTCTGGCCTTCTTCCCCTTTCTCTCCGTTGTCACGGCAGCAATGCCTTCTTGCCAGCATCCTCCTCGGCATAGGAACTGGCACTCTTTGGGGAAGTACCCCACGACTACTGTGCTCACTGCAACCTCTCTAACCCCTTACTATGGAGCCTAGAACTCAGCA-------------------------------AGGTT-------------------------------AAGTTAGAGTGAGCGAGGCACTTCCTCAGAGCTAGTAAGTGATGGAGGCAAGATCCAGCCCGACTCTGTTCACCTGGACCACAGAGGTCATGGTGATTCTGCCAGTTTCCCTGGCCAACCACATTCACCTCGTGCCCAGCCTTCATCCTAAGAGGAGTGAGGTGTGAGCCTCAGACCTGGGTCCTAGTTTTCTCTAAGATGATAGG--AAAGCCA----GGGGCCTTGTTGCTTTTAATTACGTAACGGTTGTGTTGCTTGTGTCAGAATATATAAGTACCACTTACACCCAGTGC-------------TTCCTCTCCTCACACACAACATACATCACAGAC----------CGTGGGAGTCAGCCT------GGACCACTTGAACTATTGTTAAAGTTTAAGGAATTTTGAGGCTGTTGTTTAAATGAAGGTGACATTTGCAAAGAAATAAAAAAATATTAGACGTAATGTAAATCGCAATAGAGAAAAGATAATCTTTGTAACTATTTTAGAGCAGTGTAACACCTAGCCTACTCCCATAAACCATCAGCTGTGACTCATCACGTAAGAGCTGGGAGGGTAGAGGTGAAGGCACATGACCAAAAGACACAGAGTTTAAAAGTGAACGTTTGAACATCATAAAGAATAAGTTTGAAAATGTCATTTATACACACAGGAAAACCCCTTTTCACTTAAAAAAaaaagttaactaaaaatggatcatggatatgga--------cagaaatatataacttgcttgagaaaccatgtgctaagttgttgcacatctaaaactagggtaggtgctctgggacacgatact--aagtataa--aaggacaaaaataaactaactaatgagtcctatttaccaaagtcaaga-actcctgtggagtggaagaagcaagactctccatagtggaacacaa--tatcggtacagactgggatagaaaacttataaacggtgtatctgcaattttctttaatgcagaaaatctaaagggatctt-gaaacccaatggcaaaaacaaccatccacttaga
s HiC_scaffold_1 139761107 1661 + 233722169 TGAATTATTGTGATGAAAATACACAAAGCCGAGCAGGAAAGCAAAAGGGCATCAATAACTCTGATGTTTATTTAATGTGGATTTATGGGCTTCATTACAAAAAAGCATTGATTAACAATAACTTACTTCCAGAGAAAACTTGATGTGTACCAATAGTTGAGAGTAAAATCAACCTGTGGTAGTCTAGGTTTGAAGA-----TTCTAGTT------CCTTAAACTTTTAAACTA----------ATTTAGCCCatgtaaaaaaagattacaatGAGTAGAAAATATGCTAGAAAATAGTA--TCAAAATATGAATATGCATAGTATCTGACCCAATGGCATCATATTCATTGCTGAATTAACCCAC----ATCCTTGTGTAAAAAACATTCAATACACCA-CATCATCAAATTACACGAGGTGGCCACGGGCTGTTAGAATAAGAGGCGGAGCTCAAGGCTATCCCACTGAGCTCTCTATGCAGAGCAGCTGT-------TATAAT-----------GTGTCA-GCCCCAGGGGACATCTCCAAGTCCCCAACGGTGCCACACAGATCTCACGCTAATC-----CCCTAG-----GCAGCCACCTACGAGTGCTAGGAACAGAGCAGAGATTTGAATCCTACTGCATGCTTTCCATCCTTTATGCTTGATAACAACCATAATCCCGATTTTCTAGCGTGCTTCTC--TTGTCAC--------TGTCCACTAGTGACCACAAAGTTCTTCACAGGCA--------------AAAAGTGTC-----ACTGCCTCGCTTACTGCCATTCTCACACTGCCTTCTTACTGAACCGAGAGTTCACCATGTAAGTCCTACTTAGTAAGCCCAGCTTTTGAGGCTTCATgctcttgctttttaaaacttgaatGGAAACTAGGGGTGAATAAGGTCTTTCCTCAAAGCTTGTAAA-----------------ACTCAGACCCATTTCCAATTGACCACAAAGCCCA-------------AGTTGTACTGTTACATTTCATTCCTTTC--------CCTTCCACCTAAGATGAATAAAAGCACAGGTTTAAACCTAACCTTCAGTTTCCT---ACATAACAGGCTAAAGCCACGTCTGGGTCTTGCTACTTTC-ATAATGTA----TTGTGCCAAGTAGTTCAGTATTTGCAAACATCATCCGTAGTCA-TGCCTATGAATCTGTTTTCCCTTTCTAATCCATAA-ATAGATCAAAGTCTACACTAGTATGTGGAAGACAGCCTGTGTTGGGATCA---GATCTATTGTTAAGCTTTAAAACTTTTTGTGA--GCtgtttaattaaaagttaaacttATAAAGTAATAAAACACACTTAAA-GCAAAGTAAATTTCAGT----GAAAAACAATCTTTTCAAC-------AGACAGTG--------------CTGATACAATTGATCATCTATGG--------GCAAAAATTG-------------------------------GAGCcatggttttaaa-----------------------------------------------------------------ttttatgccatataaaaaattaactcaaactAGATGGTAgatataaatgtaaatgtaaaactATGAAACTTCTATAAgaaaacattgaagaaaatatttaggaTCTAGACCCAGG---TGAGTTCTTAGACATGACACCAAAAGCATGAtccataacagaaaaaaattgtat-----------ttcatcaaaattaaaatttttttatgctGTGAAA----------TCCTTTTAAGAGGATGCAAATTGAAGTTACAGGCTGGAAGGAAAAATCTGTAAACCATATCTGTCGAATTttgat--atttagaatatataaagaactcttcaAAACTCaatgacaaaga-aatattttacttagA

a score=23396
s chr3           152910575 3129 + 160039680 GCAAGATATTTCTTTTTGGAAGATGCTTCATGAGATAGATGGTCATATCAATCTCTTTCTAACACTACATGTTTG--------------TTTTCTCTGTCCCCACATCCAGC--------AGCAGCAGCTTATGTGGCCTCCCCGCCCCCATGGGGTTTGAAATCTTCAGGCTCATTTTGACCTTTCAACCCTGATTTTAATTAACCTCTGAGCCTACTGTT---TTAAGACCCATCCCAGTTTT--CCTCCCCTGTCTTGTCTGTCACCAGCTTTCCAATGCAG------------TCTTATCTCCTAACGTAGGTTCC--------------GCGTCTCCCTCACCATATTA------------------TATAACTCATGTTTGCTGCTTTTGTC-ATATAACACTGTCATTTCTTTGGGAGAAAATTTGGCTCTAAATTTCATCAGAATCACTAATTTATTGCCTGTATACAGTAGAAACTTTAAGAGGTCTGGCTCAGTAGACTAGTCTAATAATCTATCATCAAAGAATGCTAGTTAGTTATCTCTTGC-ACCCTCTGCTCTCTTGTCTGTAAGTTGTGAATAATACTAAAAAGTTATACATGCAATTGATGAACTACAATCTGTGTGAAGTACAGTTAGTACACCTGTACTGTATATACAATGACAATCATCAGCACTATCGTGAGCATGTCACT-----GTCAC---TATACTGACAGAGTTTTAGGTTCCTGTATGCCCATGAATATCTGGTGTAGCCT--GGTGGAGGACCTGGCCTGGAAGTCAG--------AGATGCAATATCTCT-CTCACCTCTG-TCCGTGACCTTGAGCCTGTGTGCATGACCTTGGGTTAGTCAGATGGGTATGGACTTGGGGACAGGGCTGAGCCTCTCTGCACTCCTATGATTGAGACTATGATTGCACATTGCTGTTTTGAGTCAGGTCCCTCAGTTTGATCTGGGCTCTCAGTGACAGGC----------------------------------CCATGGACTCGGGCTCAGTGTGGACTACTCGGCCATCTTGGAGATGTATTGGTGAGTGCACAGATATAGGGCCACTGCACTTTGGCAAATG--CTGACTATAGAATGGTTATGGCCTT---CAGTTTATGATCTCAATGGCTGTTTGGGCATTTTGAGAGGAAAATGCAATGCCGGAGAGTTA-CAGAGGGGACACACCTGATGGTTTTTCTCTTAGCTGATTCTGTGGGAGGGACGCCTCTCCAGCTGATCAACCTAGTGACACTTCTCCAA-CTCATCCTCCCTGCAGACACCTCAGGTCACGGGACCAGTGGCCTCAATTACAGAGGCAGGGAGACAGATG-CCAGAACCACA--CGgttacagttggaagagcccttgtctagtctaaacatttgattttacacatgagggaacttcatc-tcagagagaccagaggacagctacaaggtcacagagttagaagtagaatttggCATGGACAGCATAGGTTCTGGAAACCCAGCTGAAAATGTGTCCCACCTTCCCCAGGACCATCCACAAGGG---ACGAAGACA-----------AAAGTGAGCCCCAAATAGG-CAGCATGTAGAACCTTCTAACCCTTCTGGCCCCCAGTCCTGAAATAAGGTCTGATTGATCAAGACTGTTGGGGAAAGCGTTGACGGGAGCTTGGGGAGAGAAACACACTTT-CTAATTCTTCACTCCTGTGTGAAGAGCAAAGCTGTTGTCATTAGGCTGTGTGTTGCAGAATCCTAGAACGGGAGCAACTGGTGCTCGAGGTCTTTTTCTCTTGTGCTTAAGGACCTACTCAGCACCCTGTGGTGGCAGGTCATGGGAGACAAAGAATGTGGTTGTGTTTCCTGAAATGTGTTTCCTGTCATGACTCAGGGGCCCCTCCCTTGACACCAGCTCTGTGAGAGGACAGTCCCGGGAACAAGTC-GGCATGAGGCCTGGCACCTGGGAGGCTTTCAGAAAGCTGGTTGGATGAGCCCAGAAGGCGTCGTGTGTCGGTGACTACATGCCACAGAAGACGCAGTAGAACGTGAATTGGCTCAGCAGTCGGAGCCCTGTAAGACGTGATGATCAGGCCAGTGGAGAGTCTATGCTCTCACACTTGCATAGGCTAGTCGAGTGGGGCGGGGCAGGGAGGGGGGAGGAGAAAGCTTTTCTCGCTTGT-------ATTCTCATTTCAGTAGAGTAAGCACGAATTTGTGGTTCAGTGGTTCCGCCTCTCACTGTGCTTTTCTTCCTCTGACTTCTTGCTCTTAAGTAGAAGTACCAGCCTGCAATTCTGTTGGGGCATTGTGCGTAAGCCGGTGTTTTTCTTCTGTCTCCTTTTCTCTGGAATTTTCTTTTCTTTGGAGAGACATGGCTACTGCAGGGTCTGAGGCCCACAGTGTA--CCTG---------AGGGAGGAACACCGATAAGTGCTGAGGCAGGTTGACCACGGGGGAGACAGGAAGTCTCCCATGGCGGAGC------------------CTGGTAACCAT-----CAAATCCCCTATATCGCTCTGGAATCTTCCTTGCTCATTTGGGGTCAGGTGACTGAGTTGTTTCTCCATCAGTAGACTGTGAGAGTGAGTGTCGTAAGTCACTTATGAACCTGGGCTTGCTGACATGCCTGGTGCTAATGTCCAGCTCTTCCACAGCAACCTCACAGGCTACCACCATATGGGAAAGGGCTGTCTG-ATGACTCTGGTCTACAGTGCAAAGACAACTCT-----------ACCCCTTGGGCCTTATTTGTAACCGAATCATTACCTACCCCACCCTGGCTTTTTATTCTAGTCTACAAAGCCCACCTCATCTGAGGAGAGCACGGAGGC---------------TGGATTCT----GACCGCTGTG-------TCCTCTTGGCTGTCTGGTTTGGGAGTGCAAATGCACTGGTTCTGGGCAG-ATGGTTGGTGGGGAAGT---GGGTGTGT----------CCCCTTACGCTCCATTCTGCTCGGAGTTCCCTGAGCTTCTGTCA--TCTCCGTTCTCTTTAAGTGGATACAAGAAGAAGTTTTAAGGATGAAAATGAAACTT-----------TAAACA---CTGGATGGTTTTGCGCTGTGAACTGTCAACGCTTTAAACTGTTTTCGTAACCCTGATA-------------------AGCTCGGCATTTCAG-------TCATCTCAGAGAGATTAATTTTTGCTTATTTTCAG--ATATAGTTGAGG-TATTTTTAAAAG---CTACAAGTCATTGCTGTTAGGCTGGGGACTTTTACATTATTATTAATCTGGAGGTATGAAATGTATTCATCCCAAACTTTGGGtaattataatgaaattttaaa
s HiC_scaffold_1 139764364 2821 + 233722169 gcaagaC--TGCTTCGTGGCAGGTGGCTCATGAGATGGAGTGT-GTCTGGA-CTTTATCTTATACTCCATGTTTTACAGTCACTTTCCTTTTGTTGTGACTATGTAACTGGTCAAAGATAAGCTTCAACTT--GTGGTTTAGCC--CTCTGTGTAGCTCTTGACTTTCAGGCTTGTTTTGGCTTTTTGCCCTCAATTCCAGT---ACCCAGAATCTGCTCTTCTTTTGAGGTTCAGTTCTTTTATGGCTTCCTGTAGCTTTTCTTCTCTAATCCATTCAGTGTGGAAAAATACTACATCCTTTCTC------TGAGTTCCCCCAGAAACCAGCCACATCTCGCTTGTGACATTACTGTCAAATGTATCTGTCTGTGACACATCTGTGTCACATATATCTACCTTACATCA-CATTT-----------AACTTAGCT-TAAATTTAATCACAGTGGCTAATTTATTGTCTGTACattacaaaaactt-aaaaattctgGCTGAGTGGAAT----------------------GAATG---------GGTCTCTTTCTAGGCTCGGTTCTCTCACCTGTTATCCGAGGCTCATGCT-------CACGTTTGGAATCA---------------TGTGATACTCAGTC---------------------------CCATTATTGGCACTGTCACTGTCATGTGACCTCTGGATCCCAGATTCAGTGCAGAAGTTACAGA---------GTCCAGGGCAATGTGG-GCGCCCTAAGCCGAGAGCCCTAAGCTG--AGTCAGGGGTCGGCAGACCCAAGTTCTCCACTCAGCTCAGCTCTCTGAGCTTCAGC-----TGCCTTATCT-------GCAACCTGTGTTAGATCCTGAAGAGAAGGCTGAGCTCCTTGGC----------------CTATAACTTCACTGTGCTGTGT---GACAAGTCC----GCTTGGGCTGGGCTCCAAGTGACAAGCAGTGCTCTGGTTTCCTAACTTCCTGTCTCTGTGCCCACACCATCTCTCTCATTGGGGAGC-CGGTGCAGTCCTGGTGATCTGCTTGTGAGTACGAAGATACCCAAGCATTTTGCTTTGGTCACTGTACTGACAGGACAAGGATTATTACCTTTCTCAGTTTATGACCACAGTGACCGTTTGAAAGTtataggagggaaagaaaaaaaatcagtgccaTCAGAGGTGACACGC-TGCAGTTTTTCCTCTCAGCGAGTCCTGCAGT-GGGACACCTCTTGAGTTGATCAACCTGGTGACACTGCTCCAAATTCATCTTCTCCACAGACCTTACAGGCCACAAGGTCGGTGACCTCAATTACAGAGGCGGGAACATAGGTGCCCAGGATAACAGTGTGTCACAGATGGAAGAGCCCTTGTCCAGTCCAAACATTCAATTTTACACATGAGGAACCTGGAACTTTAGGGAGGCCAGGGGACACCTCCAAGGTCGTGGAGT------------------------GCAGACATCCCAGAGTCCTGGTTTAGGACTTCTGTTCCTTCCGCTGGTCCCACCCGCACTGGACCACGATGACAGCTCTGATGACAAAATGAGCCCCAAACAAGTCAGCTCAT----CCTCCTCTCCCTG-----CCCTAGTTCTTGATTAAATGTTA------CAAGA---------------------GGAGTCCAGAAAGTGTCATGTATGTTACTAACT-------------------GCAA------TGCCACGAGAGTATGT------------------GGGAGCAGC-------------------------GGCTCAGCAAGTCATTCTGCAAGCAGCGAGGGTAA---------------------GGTTG---ATCCTGA---------------GTGGCTCAG-------------GAAAGCAGCTT---------AAGGTTCCTGACACATGTCTGGAATAAGG--------------------------------------------------------------------------ACATGAGACACA------------------------------CGCTGT-----GTCATGTTTGTTCTCGTGGGAGGT-------------GCTACATGGGC----------------AGAAGGAAGGACAAGGGAGAAATGTATTCTCCCTTATTATGGTCCTACTTATTTCAACAGTATCAATGCGCATGCTTATTTCAGTAGTCTctctt----ctgtgtttctcttttgatGCCTTC------------AGAAG-----------------GTATGAACAGGATGC------------------------------------AAGCTTCCTTTCGGGGGGAGGGATGTTTGTTCTGGGGAATCAGAGGCCC-CAGTGCAAGCCTAAAAGAGTACAGGAGGGAGCTCC-----CTGCTAAGGCTAAAGGAGCGCCAGGGAGTGAGGACACCACACCCGGTGGGGCAACTTGTTGAATCCACGTCTGGTGGTCTTGCTGGCCACCCCTCTCCACCCTCC---------CCCTCCTTGAGTGGGATCCCATGGTTGACCCGT-----------GAAACTTGCAG---GGGTGTCACTGG-CACTTCGGGCCCTGGCCCTGCTGATGTATCCAGTGCTCTTAGCTCTCCCTTTCACAGCAAGCTGGTAGGATA-CACGAT---GCAAGAGGCTATCAGAACCACTCTGGATTTTTGTGCAGAGA-AGCTCTGTATGCCAAACACTCTTCGGGGTCTGTTTGTTACTGAAGCATCACCTCTTCTATC----CTTTTGCCTCTGATCCATCAAACCTACCTTATCTGAGGATAGCACAGAGGCAAGAACGCAGGGCAGGGGACTTTCGCAGATTACTTTGCAGGGGATCCTCTCTGCTGTTGCGCTTACCAATGTGAATACACAGGCACAGGGTAATGAGGTTGGAGGGGAAGTCACAGGCTTATGCTTCCAGCCTCTCTTGC-CTCAACGCCTTCCAAAGTCCTCT---TTTCTTACAGGTTCctgttttgtttaaatatatactAGGAAAGCTTttaagacaaaaactaaaacttccagagtaaaataaatatttttagatggCTTTTC----TAAATGCTTGGcacttttgtatctttttctaaTAATCATAATTTATCTTCAATTTAAACAATtcaacttttcaatttctttttagttgaaagagtttaatttctttttatttcctgttacaTGATagaggacatttttaaaaaagtctagaAGTTATTGCTTTCAGGCTGGCATTCTTCATGTTATTATCAACCTATACATATAAAACACATTCATCCTAAACTTTGGCTCAAGACAAGTAAATTCTGAA

a score=40204
s chr3           152914712 1077 + 160039680 AGACACAGGGGCACATACCCATAAACTTTTGAATGCCCCAATGAGTT-ACTTAAAATGTTAAGATTAA-CAACTAGGACTG-AAATGTTTATAGTCCGGCAGCCACCCTGGACCACTCTTGCAGAAAAGGCTCAGGAAACAATTTGGGTTGAGG-TATTTTTCTTGTCTGACTCTTCCAAACACAGCTTTGTATTAGCGTGTTCAATAAACCAAGTAACACGCTCTCTGCATCACTCCGAGCCATTCTTGACCCTCATTTCATTCTATTTGGAGGTAATTACTTGCTGCTAATGCAAAATGCAAAAGACACCCTTAAATTCAGCTGAATTATTATGTAGATTGGAAACCAGACCTCTCAACTCCTCTCT--------CACCAGAACTCTTTTGTCTACTTTATCAAATAGAAAAGTCCATCTGATTTTTCCCCCCCACGGGAGAGGAACCTTTCAT-TTATAATAACAGCCTGTGCCTGGGACTCTTGGAAGAAAGGGGTGAGCTGCCTGGAGGATGACATCACAAGtgaatgaatgaatgaatgaatgaatgaatgGGTGGGTAATGGTGTAGAGGCTTAGTGTCAGATCACAGAGGAGGAATGCCGGGCTGCAGCCTCCACGCCT---------------------------------TTTCCATACGGCGCAGAGAGAATCCAGGCTTCTGTTTAAGGCCTTCTAAACAGAA----------------------CCTGGGTAATGTTGTTGTTGATCTGCGTCTGGATGGAGCTTT-GCTTATTAACTCATTTATATTCAAATCAATCGTTTCAGTGAACTAAGAGCTCATGTCTGGATTAATAGTACTTACAGTAAAAATGGAGCATGGGTT-TCTCAGCCTCATTCCAGGAATCAATAAGCAAACAACAGTAAAAGGCTATTTTTTTTTTCCATGACTACCTAACTGGCTTCCCAAACATCCTCTTACTCAGAGGAAGGGATATTCTTCTATTGCAGTAAGAGGCAGCGAGCACATGGCTTCTGTTAGGACCAGTGGA-GCTGCG-TGCAAAGCTCAGTTGTCAGGAAGAAAGTTATTTGCCACAGGCCTGAAAAACTTCAGCGGATTCTACCAATCAGGTCTTCCTGAACCAGCGAATCACAG
s HiC_scaffold_1 139767693 1110 + 233722169 AAATACAAAAGCACAAATCCAAAACCATTTAAATCCGCAGGTGAATTTCCTTCAAGTGTTAAAACTAAGCAACTCCaacttcaaatttttattatctgCAAAGTGCTCTGGACCATTCTCCTGGAAAGCTCCCAAGGAA--ATTTGGGATGGGGACATTTTTCTTCCTTGACTCTCCCAAATACAGATCGGAATTAGCATGTTCAATAAAGTAAGTGGCACTTTCATTGGATTACTTG----CATTCTTGACCCTCATTTCATTCTGCTTGGAGGTAATTATTTGCTGCTAATGCAAAGTGCTAAAGACAGCCTTAAATCCTGTTGACTTATTTTGAAGATTGGGAATCAGACCTTCCAATGCTTCTCTTCAAACAGTACCATAACTATTC--TCTACTTTGGCAACTAGAAAAGCCAACCTGATTTTTCT---------GAGGGGAAGCCTTTATCTTAAAACAAGATATTGGTCCCAGATTCAGTGGAGGAAATGGGTGAGTTGCCTTGGGAATGAGGTCAGGAATGAATAAATCA--GAAAGAGTG------TTGGTGA-----AGTATACACTTTCAGAATCTAATCAGGATAGCGGAACA-TAGCTTTTagtctttctatctctctctctctctctctctctctctctctctcactctctctctagTGCACAGAAAATGCAAGCTTTTATTT-AGACATTCTAAACAGCAATTCTAAAATTTAGCCACAGTCACTGGATAATTTTGTTGTTTATCTGTGTCTAGATAGAAATGCagaatattaactcatttaaattCAAATCAATCATTTCTGTATACTAAGAACTCATCTCTGGATTAATAGTATTTACAGT-AAAATGGAACAGGGTTTCTCTCAGCCTCAttcctagaatcaataaa-aaacaacagtaaaGGGCTA---TTTTTTTCTACGAATACCTAAATGACTTCACAGCCATTATTCCactcagaggaaaaattattctTGCATCACAGTAAGGGGGAGAGAATGCGTGGTTCCTATTAAGACTAATGGAGGCTGAGATGCAAAGTTCAGTTCTTAGGAAGAAAGTCATTTGCCACA-GCCTGCAGAACTGGAAAGAAACTTACCAATTAGTCCTCCCTAACCCAA-GGAGCACAG

a score=12826
s chr3           152916284 1194 + 160039680 GAATCACAGGGGATTCTACCAATCAGGTCTTCCTGAACCAGGGAATCACGTGCACTGATGGAC---TCGGCCCCTCACGGCAAGCAAAGTCCAGGAGCATTGTAT-TTCCTGGAAAT-GGAAACGAAATATCTTCCATAAATTAAGAAGATGGCAAG-ACAGTAAATCAAGATTAGACATGTGGGACTGGGCATTATTTATTTTTCGCAGAGTAGAAAATTAACGTCTACAAAGTATAGAAACATTTCAATCAAAAATCAGGGAA-------CAGTGAGTGATTGATAACCCAGGCTCATATCTGT------AGACCATGCTTCCTTCTATGTT------CTTATTTTTCCAGTTCCCGTGACTTTTCTTCTGGTCTATTCAAAACACTGCTTCCCTGCAGCCTAGttttgaaaatcttatatagcccaagctggccttgaacttgcaatgtggtccaggatgattgaactcccgatcttcctgcctc---cacctcccgagtactgggttacaggtgtgagatatcacactctgatttatgtgattctagagggatcaacctctgggccttatgcacacaacgtcagcacttgacaaaccacactacatctctaaccTGAGCACAGCTTACAAATCCTCTCCCTTTGCCCACACAAAAATCACCCCGGGCATTGCCTGCAAAGCACTTG--AGTCCTAGCTAACATTTTAGAGTGTTGGGGCCAGACCCACGCCCAAGGGAGATTTCACAGACACTCGATATACACAAACCACTGCAC----AGACATTTCCCCAGTCACCTTGGTATTGTCATGGCAGCCCCACTGTGTCGGGACAGAATCTAGACTCACCCTCAATTTTCTAAGAAAGCCACTTA-GGAAGGACCAAGCTGCCCAGCGTCCCCAAGATATCAGTGAGATCGA-----TTGAAT---CAGCATCTTACATCTCACAAGATGATCTGGCCTTTGCCTAACTTGCTCTTACT-CAGTTGCTAAACTTCCAA------------------TCCCTCCAGTGAATTCTGGCCATAAAATGTTATAACCATGGATCTAATATGGATACCTGGGAAGAAAAG-------TTGATGGAAAGGCACAAGGGAACA--TTTCTGTGGGAGAGCAATGTCCTCAGATTGGATGCCAAACTGGCAGAGTCTATAAGTGTTAACCTTCAGATCTGCCCTTTCTCAAGGAAGCTGCTTTATAG-CAAGTGTTGGCCGATCTTAAGAAATTGATTCAT
s HiC_scaffold_1 139768753 1053 + 233722169 GAACTGGAAAGAAACTTACCAATTAGTCCTCCCTAACCCAAGGA-----GCACAGTCCTTGACATTTCTTCCTTCCTAAGGGAGTAATGCATAGAAACATCATATATTCCTAGAAACAGGAAATTAATTACCCtccataatttaaaaagatggcaAATATAATAATACAGGCTCAAACATAAGAGACTGCGCATTGGTTATTTTTCATCATGTAGGAAATTAAAGTCTACAAAACATAGAAACATCACAGTGGAAAAATAGGGAATGCGGGGCGGGGGGTGATTTATAACCTTGGTTTATCCCCAGGTGGCAGGGCCCTGGCACATTTTCTACTACACAGcactattttccattttctaaaattattcttcAAGTCTAATCAAAAC------------------AGTTTT-----TTTAACACAGCct-------ttttcatctt-------------------------ccttttttttcctgccaCAAACATCTCCAG----------------------------CATCTTAA---ATGCAATTCATTGGCATCCATTATCTTGTTCTTA------------AAGAACTTG-----------------------------------------------CCCTCTACCCA-------------------GTCCTCTGGAAACCTCTTGGAGGGTTTAGATGA-ATGCAAGAA-GCCAGGGTCAG-----------AGGAGGATTTGTCACACCCTCACTGTGTCTAAAGTACCCCACCCAAAGCTATTT-----GAAACTCTGG-----------------CGCTATCTTAGAACAGACTTCAGGGTCACCC-CAACTTCCACTAGAACCAACCCATATCAGGGCCAAGCTGTCCATTGTCCCCAAACCAGCCTTGGGAACAACAGACTTGAATTTCCAGCCTCTGACCTCTCAACAGATGG-CCAGCCTTTGTGTAAGCTGGTGTTACTCCATCTGCTAAGCTTCAAAGGTAAGGAAAATATGTTTTTCCTCAAGTGAGCTCTGGATAGTACAAGCTGTAATTATGGATTCCAAATAAATACTGgtgaaaaaatgtcttttttctttgaaaaagaaccagaaaaaaggTTTCCAGGGGAAAGCACTTTTTCTAGGCTAGATGTGGAAATTGCAGACTGCTTCC-TGTTTACCTC--AGCCTGCCCCTTTT---AGAAGCTgttttacagatgtgtgccagcaTATCTTAA-CAACTGAGTCAT

a score=34440
s chr3           152917567 1728 + 160039680 ATTCTGCTTAAGATACAGGGGTTGCTACAGTGAACAAATGGACCCAGATCTCTGTTCCTGTGTCCATTTAATCCTTGGCCAAGGAGGAGTTATGGGTCAATACTTGCTGGTGTAAGAACGGGAGTTCAAGGAGCAAGCTCACATGTGCTCAGT--ACTGCAGACACCTCTGATCTCTTCTTCCTC---CTGTTGACTAAGCCCAGGTCCGTCGCCAAGCAACACTTCCTCTTTGCCATTCGGCATCTTATGCTCATCACATCTCTTAGCTCCATCTCGTC-----TTACAAACTATTCACTGTGGACGTGATACTGTAGCCTGCTCTTCTGTCTTTTAGGAAAGGAAAACACTTCT-AAGGAGCTGTTGCTAGTGTTCTCAGACAGAACCCAGGCAC-TGTTGCTTGAGATT-CGGGCACCGTACATCAGGGGAAGCGCCTCTGTGTCCTACCGGGATGAAAACTGTTGCCTTGGGCAGCCTGGGGGTGACAGGACAAATACCAGGA-GCATGGTCCCCTCTGTTCTTTTGATCTGTCCACCTTTGGGGCCTTGTGCTGCTCAGCACATGACTAGTAAATAAATCGCCTGCTGGGCCTA-GGCTCTCC-------TTTATGTGAAGTGTGCAAACCTCACC----CTTAAAGAACGTGA--TTCAGGGATTTTTTTTTTTCACTTCAGAGAAACCCCATGTGGCT-GAGATGTGAGCTCACTGAACCTTGGCTACTCACAGGCATTTCTATTCTATCA---GTTTCTATGAATTAGACACATTACCTTGTCACAATTCTGAGCTCAAAACTCAATTTA--CATATTAGAGCATCATGAAAAAAATATTCTAGTCCATAGCTCCTGATGCCTTTATCTCT----GTTGATATGGGGAAATTAGCTTGATTCTTTCCCGGATTTTAACCAAGGGCTGACTTCTGGGTAGGGCGAATCCAGACAACC-TAGAAAATATTTTAGGAGTGCAAGCTCTGTGGCAGAGGTGAGTGTGCCTGGGCCTCACTCTTCAGGGCTGGGAAGGCCAGCTTGGCTAAATACATTCCTAGTCAACTGTACTTTCAACTCAGTCTAATGTCCTTTTTCAATGCCATGCCTTGCTATTTTAATATGGAGGTCCCCCCTCCTCCACAATTCCTGAAGTATCACCCTGAGTAGTAGACAAGTCAGAACTTACCGTTAAATAGCCTAG-ATGCTTGCAAATTGGCCACTGGATGGTGAACATA---TGATTCACAGATATGTTAACAACACATATAGGTGTGTGTCCGGGGAGCTG--ATTtagcataatgggttaagcctacagacttcagagccatgctgggtttgaaccccacctctaccattaaagttccctgaaaatggggcaaattaattaacctgtctctagctcagtttttccatgcacaaaatggaaatagcagcagcatttttcagactgatatgaagaagaaattaat------actcagatatttagagcagtAGACCTCAGTAAACAGTGCCATCGATAGAGAT---CAAATGGTAAAAACCACCTGGTACTGCCTGTCATGCGCTCTCTCTGAGAGGCCATTGCT-------CACTGTTATAACTTCAGGGAGATGTGAGAGTCATTCTTCACAGAACTGAAGACGGCCTCACGGG-GACTTTTAAAAGGGTGGCTCATCAGATTGCCAAGT-GTCTGCAGCAGACCTG--------AAGCCGCTGTGGATCTCAACCCGGGCCCTGCCTAGACCTGGGCTCTGGAGCAGCTGCTCCAGATGTC
s HiC_scaffold_1 139770257 1702 + 233722169 ACTTTGTTCAAGGCATTGGGGCTATCAAAGGAAACAAATAGACATAAATCTCTGCCTTTATATGCATTCCATCCTCGG-----GAGAGGTAATA----AATAATCACTGGCATAAGAGAGG------AGGGGTTAATCTCACTTATTCTCAGTTCACTAAATACCTCTCTGTACTCATCCCCTTGGGGCTTGTGactaaacaaaattctttatccAAGAAA-ACCCTCTTTCCATCAT-----AATTCATG----TCACATTTCTTAGCCCCAGATCGTCGTGACTTATAAACTATTAGCTGTGGATGTGACACCTCagccatttattttctcttttacaaaatGTAAGCAGTTCCGAAGGAATTGTTCCCCGTGTTCTCAGACAGAACCAGGACACGTTTTCCTCTAGATTTCTGGCTCTGTATATCAGGG-AAGCACTGCTG---CCTACCAGGATGAAAACTATTGCCTTGGGCAGTCTTGGGGTGAGAGAATCAATGCAGAGATACACAG--ACCTCCTCTCTTTTGATCTGTCTCCATTTGGACCCTGGTGCCACTTCACACAAAACCACTAAATAAATTAACTTCTGGGACCACAATTCTCCTGCTCCTTCTATGCGCA-TATCCACACCCCAATTCTGCTCATAGGATGCAATGTTCAGGTACTGT--------ACACCGAAGGTCTCTCATGCCATTAGAGATGTGTACTCACCGAATCTTGTTTATTAACGTACTTTCATATTTGATGAGTGGTTTGCATGAATTAGATGCATTACCTTGTCATAACACTGAACGGAAACTACAAACTGACaacagcaaagca----aagaaaaaaattctggtgAAATTCTCAAGCTACCTTAGATTCTGATGGCTGGCATAGCG-AATTTGATGGCTTCCTCCCCAAACTGTTGTAAGGGCCTG----TTGGCTTGAGAGTGCCTTGCCTGCCTTTGGAAATGCTTCAGGATTGCAAACTTTGTGACAGAAGTCAACCCAGCTCGGTGTCATCTTCCAGGATGTGGAAGGCTGGTTGGGAAAAGGATGTTCTT-------TGATCTTTAATGTCAACCATACATCAAGTTTCAGTGCAATGCCGTGGTGCCTTA--GTGCATTTCCCACTTCTT--GCAAGTTGAAAAATTTAACTCTG---AGCGGAGAGATCCATGCCTTTAGTCAAAGAATCCGGAATCTTTGcagttttgttacttttaaactAACTTGCCTTCAGTTATAGACAGGTTAGCCATGCACA------------CGAGTAACTGCAATCTAGCATGACTGACT----------------GAACTATCCT-GGTTTTAATCCCATATCTGCTGTTGAGTTGTCTTGGAAATcaggcaagttacttaacctctctttAGCCAGAtatcttcatctgtaaaatgggaataacagCACCA-ACCTCAGGATACTGTGAGGGACAAATAAATCAATCCCCTAATATCTTTAGAGCAGTGAGATTCCATCAATGTTAGCTGTGACTGGAGTGTGCTAGTTGTGAAAAACAATTAGTACTGGTTAATGAG-GCTCTTGGTGAGTGACCGTTTCTACTTTAATGCTGCTTTCCCCTTGGAGAGAAAT-CGAGTTGTTAATTATAGGATTTACGATGA-GTCACAATCCACTTCTATGGGGGTAGGTGGTCAGGTTGCTAAGTAGTCTGTGACAAATTCAGTGGCAGTGAGCCACTGTGGATCTCAAGGAAAGTTCTGTCTTGACTTGGGGT-GGGATGAGCTTCTCCAGATGTC

a score=42408
s chr3           152922036 2523 + 160039680 TAACAGTGATGGGCCTGAATGTT----CCCGGACTCTGAACACTGTATTCTCT-AGGTCTGGCCACTCTGGCTGTCTTTTCAGCTGCTGCCCACAACCACT---TAAACTAGCATGGTCTGCAGTAAGGATGATT-TTATTTAAGGCTCAGGTGGCCCATGTTGCCCATGTTGTTAATATTCAAATACAAGTGTT-AGTGAAACCATACATATGTAACCAACCTGCACCAGCCTGGTGA-------------TCTA--CCTTCTGATTTCAGGGTTTCACATACATATACCCACACGTAACTGAGGGCTAGCCATGAGTGCCCCATGCTTCAcccatggggaaggtcctatggttcacaccattttgcagataaggaccttgagtgctggagtggttaagcaacttctgcataatcccccagctCACACCCCGTGACTCAGTTTCTAGGCAGTCTTACACTAACTGCCAGTTCCACGTAGGTAG----CAACTCTGCCCTCATAAAGCGTCGATCTCCCATGCGCCAG-CCCAGCTCATGATATACAGGAGGTGATCAGCAAATACTGTGGGATGACC--GAGAGTCTAATTCAGATCCCTCACTTGAGGCTACTACTATGTAATGTATGGATCACATA----GTCTTCTCACTAATCATGTGATTCATGACAAGGCCATGGCCTTCTGAGTATGAATAGATGCTcatatacaacacacgtgcatataaatacatcatataagaacacatgtgcacacaggtatatcacatatacaacatgtgtgcacacagatatatcacatgcacaatacatgtgcacacagatatgtcacatacacaacacatgtgcacacagatatgtcacatacacaacacatgtgcacacaGATCCATCTATTTCACCTCCACTCCTGGAATCCAGGGACATCAGCTCATATCCTGTTGACCCTTGTCTCTGTCT--TGCATAAGGGTCATTCATTTCTAAGTTACCTGTCCTATGATACAGGGGTAAATTCCCTGGTTTCCTTGGTATCTCTTATATAAAAGGCATTCCCATTGGCTGATCTGATCTTGGTTGGCTAAAGC-----------------------GAGTGGCTGT-AGGTGTAGGAACTACGATTAGCTCTCGTGATGCCCCTGCCCTTTTATCT----GCAGTAATGTTTTTCTTTCTGGTCACTGGTGCTAGCTCCATGTCAATGTGTTCCCCAGACCCAACAGAAGAGAAGTGGGAGGAGAGACGTAAGAGTGTCTCAGCGGTGCTCAACCAGCTCACGCTAGTGCCAGGCAGTGCGAGCTATCTCAGTAGAGTTGAGAGG-TGTCTCTGAGATGACAAGGATGCTACCCAGCCTCCCATCACTTCCAGGATGCC---------ATCAGGAAAAGACGCCCCTCCAGAGGAAATGCCTAGCTCTGTAGAATCCAGGAGGGCTGCTTGTTTAGTAAATATTTCATCAAGAACATTAGCTGTGGAGTTTGGATGCTTAAGTAATGCAGATAATGAAATGTAAACAATTAAAAATTAATAATGTTTGAAATGTTAAGCATAATTAGGCAGGCAGCGTGTCAGTAATGAGGGGGTCCACTCGTGGTGACTGTCTATCCATCCACTCTCATGGTTGTGCTCCAGGAGACATAACCTGTCACACGGCCCAGGAATCGTTCTAGGACTCAACCCTGTG-CACGGAGTTGTGGGTATGCGGGATCTGCGGCTGTCTGCTGGCGGTAGTTCCCCCAGCGTGGGCAGCT-TTACATACAGC--CTGCATGGAACAGTGACTGGTGTGTTTGGCGAGGGGCAGAGGAGACTGTATAAA--CATTGCTGGAAAGCACCCTTCCAATCA-AAGGTGCTGGAGTTGAGGCAGGGGCGTGTATACGTTTATTTAGCGAGTCATGTGGTGCAGACGGGCTCTCTGGGGACTCGTTCCATTTATCCTTTCCTTCTGCTCTGTGCTCTCATCTTCAATCATCTCCCCTTTCTTCTCCAGTAGCTACTTTTCTTCAGTCTAAAAATAATACACTCAAGTGTCCTTCATCTCACAAAGAGAATTCTCTTAACATGTCTCCCTATAAAGGCAGCCAGCCTTCCCCTCTCCTTTCATTCCTCATCAGACTTCCTGGAAGAATGCAGCACATTTCTGACTTCACT------CTCCCTGAATTTCATTCCCTGGTG-GAGCATCCAAGTGctctgtctctgtttctgtctctctgt-----ctgtctctctctctgtctgtctgt-ctgtctgtctgtctgtctgtctgtctctctttgtctttctgtctctctgtgtctctgcctctg----tctctctcGTCACCTATGATGTCTTATTGGTTGAGCCAGTGACTTCCCTGTCCCCACTCTGAGGGACTGTACCCCATCCCTCAGAAATCCTC-CCCTTTGATCTCAGCCTTCACATTTTTA--CAATGTTCTTTTGGCCT--CTCGTGACCAGTTTTTAGGTTTCTGGTCTA---------AGAACATTTCCCCCTTAGTTCTTTACTTCTTCACACAGGACTTGCAAA-TAAAATTTAACAGAGACAGGATAGCAAGCACGTGTGTAAAATGGAGAGGAGACGCTGAAG
s HiC_scaffold_1 139773712 2251 + 233722169 TAACAGTAGTATGTCTGACTATCATTACCTGAACTCAAAAAGCTGTGTTCTTTCACATCTGGTCACCCCAGGCATATCTTCTGCTTTTGTCTCCAACTGCTGCTTAAACTAGAGCTCTGCTCAGGAAGGACAGTTCTTATTTAACATTCATA---ATTAAAATGCTAATTTTGTTAGGCTTCAAATACGAGTGTTTAGTGAAACCATACATGCATAACTAAGCTGTGACACCCCAGTGAAGCCAGATGTAAGTCTGGGTCTTGTGATTTCTGAGTTTTACGTGCAGCTGCATATGAACAATTAAA---TAGCTATGA-----CCAT------CCTATAAGGGAGGTGCCAGGATTATTCTTATGGCAGAGGGAAGGAAACTGAGGTCTGGAGTGGTTAAGTGACTTCT---------CCCAGGTCAT-------------GTAGCTAAGCA------------CTGCAAATTCCATGAAGACAGTTTTCACATTTGTCTTGTTT--GCTTTTATCTTGCAGGGGGAAGGCCCAGTGTCTGGCACACAGGAGGTGATCAGTAAGTAC-GTGGGGTGTCCCTTCGGATCTAATTCACAGCCCTCATCCT---TTATCACCACATGCCTTACAGATCACATAATCGGCCCTCTTGATGATCTTGCAATTGGTGACAAAG------------------GAACAG-TGCTA--------------------------------------------GTGAGTACAGGTGGATTA-----------------------------------GCACAA-------------------------------------------------------------------------------------CTGCTTCTACTCC-TGCCTGAAAACCAATGTAAACAGTTCATGTTCTTCTCACCAGGGGCCCTGCTTACTGCACAAAAGATGATAAAA-CTAAGATACCTGT--------------------TCCCTTGGCTTCTAGG---CTAGTACTAGAAAGGCATTCTCCCTGGCAGTCctaattcagctttggtagtgcTTGTTCTGGTCCATCAGTCGGTTGAGTAACTATCACTTATAGGCGTGATGAAGAGTTttcatcctgcctctgccttttgaCCACACAATAACAATGTTTTGCTCTCCAGTCACCGGACCCAACGC----TTAGTGCATTTTCCAGCCCTAAGCTAAGAGAACAGGGAAGAGAT-TTCAAGAGAGTCCCA-TAGCACCCTGCCTGCTGGTGCTAATGCCAAGCCGAATGAATCACCCCATCAGAGTCAGCAGGATGTCCCTGAGCTGAAAAGGATGCCACTCAGGCTTCGGCCACCATCAGCACTCAGGTGTGCAAAGCAGGAAATGCTCGCTGTGAATCAAACATGTGTAGTTCTGTGGGATCCAAGAGGACTGATTGTTTAGTAAATATTTCATCAAGAACATTAGCTGTGGAATTTGGATGCTTAAGTAATGCAGATAATTAAatgtaaacaattaaaaattaaaaatgtttgaaatgttaAGCATAATTAGGCAGGCAATCTATTAGTAATAAAGGG-TCCAGTGTTGCTGAATCTCTG-CTAAGGACGTTCAGGGCCTTG-TGAAGCAGCAAGAGCCTACAATGATTTCTAG---TTGTTCCAG-ATTGACCCCCGTGTCACAGCTTAGTGAACCC-------CTGAATGCATCTAAGGGTAGGAACTACTACAGT-CAGGCATCTACTACAGGGAGGAGCCACACAGAG-ATTTACGGGGGTGGttgaagagggg-agaggagattCTAGAAATACATTGCCAGAAATAACACTTGCAGCCAGAAGGAGCTCGAAATGAAACAAAGATGAATCCACATTTGTTTAGTGAATTATGCAATTGAAATTGGCTCTCTGGAGAGCTGTTTCACTTATTCCTTCTTTTCCACTTGCTCTCTCATCTTCAATCATTTCCCTTTTCCTCCCCAATTGCTACTTCCCTTCGGTCTAAAAATAATAAGTTCAAGTATTTGTCATCTGACAAAGAGAATTCTTTCAACATGTCTCCCCACAGAAGCAGCGggtctcctctccctctttcttcccaCATCAAACCTCTCTGAAGACAAACgcacctcccctcctccccctagTAGCTCCCTAA--------CTCTGGGGTGGGCAGCT--GGGCCCCGTCCCCATGTC-------ATGCAAAAGCTG-CTCTTACTAAGTTGACCAGTGCTGCCCTCCTG-------GTCTAATTCACT-------------------------GGCCTCAGGGGACCTCTCTCAAGATCT-------------------------------------CACACTCACAG--------CTCTGTTCttctgaaattctctttctttgATTTCAGCCCCAGAATTTTTATCTAATGTTCTTTCTCCCTTGCTAATGATTAGTTCTTA-GTTCCTGGCCTGCCCTTCACTGTGATCTTGCCTGATAAGTTCTTTCTTCTCTATCTAAGTGCCTGCAAACTAAAAATCAACTGAAATA-GCCAGGAGACATAAATGTGGGA--AAGGGTAGAAGTTGAGG

a score=80600
s chr3           152927314 2191 + 160039680 TTTGGCTATTTTAGCAGAGAGTTCAG--TGTTTGACGAGTCA-----GGTGATTTCTGGTCTTTGCTTTAGTGACAGCTCTC--CTCAGACCCTCAGCTTCATCTGGTAAGAAGTGACCGGATGGATTTGGGAATGCTTATTGTTGAGCATGGGAGAAATGCTAAACAT--GGCATGTCGAGGAAATCAATC-TAATACGCATATATTAAGAGAAGCAGGGCTTAATTGTACTCGTGGCTGCACCAGCAGGGGCTGGAGAGGG-CTAGGCTTTATAGGCACCCACTGTTCTCTGTAAC--TTGAATTAAAAGGCATCAAAATGCCTTGGTCTACTGG-TTGCTCTAGGCCTTTATTGGAAACCCTGAGTGTTTTTCTATAGATCCTAGCACCAGAGGTC-TGTAGTTCTTGTGATAGCTTAGCAACCCAAGTTTTTGAC-CTGTGGGCAA-TTTCTCCTCTACAAGGGGGAAAAGAAAAGAAA-------------------------TTAACCAAATAATTTAAATC-TAACAACAAAGTAATAAAATGCCAATTTCATTCTGAAGTTAATGGCATTACTTCAAGTTATTTAGCACTTCGTAGCAGAA-TAACTCGCCAACCTGCACTTTGCATATACATATTTATTGAATTCACCAAGAGTGT---------------GCTCTGCACATTGA---------CTGCCCATGATTTGTGCCTAAATAATAACTCCTGAATAGAACTCACTGCTTTATGGGTCTTTGGTGGGATTTTTGAAAAATAAATTCTGCACAAGGGGTGGCATTAAAAGGGAAAAAAAGAAATATAATGTGATTTTCCTCCTATGCAGGCACAGCGTTAGCTTCCTTTTATTAATCCGAGCAATGAAAATCACTTTGACACATTGTTGTTATTTATTATTTATTTT-CACATCTTTCTTTAAAAGG-CGGGGTGTGTCCATTTTAACACACTGCTAGAGTCTTCAGAGT------------------CTGTGAGACTGAGTACACAGAACCAAGCCCAGGACGACACGCTGCGGAGCCAGCTCCTCACGCAACCA-----------TGTTTATTGCGTGCCCGCTGGCCTGGAGTGCAGAAGTAACTCCTATTAAATTAGCAATCAAGCAAAGCAAAGCTTGAGTCACAGAACAACCCAAAGCACAATGGGATGAACGTGGTGACGGCCAACTCCTTGAGTGCTGTGTATAGCTTTTAAATGTTACCTACAAATTTATAATGTCCCTGATTAGCTTGAAA-TGTCAAAATCGTAGCTGAAGACCCCACAGAGGATTTCTAAAGGGCGAGGTGcctttcctttctttctttttctttttgctttgctttcttcttttccctcctctAGATTCGTC----AGAACTAGCTAGCAAAAGCTCCCCGCTTAGCCTGCTAATGACTATCAGAAATATTCACAGTGTTCCCTGGGTTTCTTCTCTTCTCGCGTGGTCAGGCTTTAACATGCAGTCCTTAGTCTCAGCCTAATTACTCACATTTGAAGCGGGAACCTCACATCTGTCACAAAGCTCTTAGGCCACTTTTAGGAAGGCCTTGCTGTCAACAACAGGAAGTGGGAGGAGGGGTTGGGGGTGGACTCTCTTATCTCAGACAATATGTGGAATTGCACCTGACTGACAAAGCCACTGAAGAAGCTGG-TGATAATATTATTACAGTAGCTACCATATGTCTTACATCAAATGCGGCTCTAGCTTTATCATTTTCACTGGGGCTCTCTAGAAGGAGATGGGAGAGAGCTGCCGCAG--------AGATCT-------------------GGCTCTCCACTGAAATGCAGGCTTCCTGCTCCTCTATAAAGGAAACAACTAAAACTCCATTTGCATCAAGAACCGA--GAGCCCTAGGTTAATTACAGGTAAGGGTATGTTTACATTCCCCAGGGCTAGCTACTGACAGGTTTTATTTCTGAGGGAAAAAAAAAAATGCTGCTGCAGTTTGA-CTAAATCCACAGGTCTTTTTTTTTTTTTCCACTCTTAAAATTCTGTGTGGCCGAAAGGAACCCATCACTCAAAGATCTTTCAAAGGTAACCTGGAAAACCTTCATTTTCCAGAGTCTGAATGCAGTTAGAGAACCCAAAGTTCAGACCCGGAAGCCTAAACAAAAGAAGACATGGGAGGTCGATACCTT---TGTGAGGCT---CAAAAGAGGGCGGGTGGCCTCG-GGGCATGATGATGGTGACAT-----AATCGGCCAA------TTAAAACCTTGAGACAAAGTCTGAGCCATACAGGTGCAGAGCCCAGGATGCTGT
s HiC_scaffold_1 139779692 2262 + 233722169 TTTGACTACATTAGAAGATAGCCCAGAGTGCTTGGGGCCTCACAAAGAATCGATCCTGGTTGTTTTCTTACTGACAAATGACAGCTCAGATTCTCAACTTCATCTGGTAAAAAATTA-----TGCTACTTCAAAAAGTTCTGATCAAGTATACATGAGCTGTTACACACAGGGTCTGGCTTGGAAATCACTCCTAATCAGTGTAAGCTCATAGT-GCAGGATTTAATTTTGTTCTTGGCTGCATCTTTAGAGCCTAGAGAGAGTCTGGACTTTGCAgacatttaataataaatataaccCTTGAATTAAATTGCATCAAAATGATTAGAATTACCACCTTGCTGTAGGTCTTTTACAGAAATCCCAAATGTTTTTCTATAAATGCTAAAGCCAAAGGTCCTTTCATTGTTGGGCTAACTTGGCAATTTAGTTGTTTGACATTCTGGACAAGTTTCCCctttacaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttagaagtaGCCAAG-AATTTAAATCATAGCAACCAACTAATACGATGccaattttatttccaaattaatGACATTACTTCTAGTTATTTAGCACTTCATAGCAAAAGTAAATTGCTAAACTCCGTTTTACACATACGTATTTATTTAATTCAATGAGAGTATATGAGAGTATGCTTTGCTATACTCAATGAATATCACTACTACTGATGATTTGTAGCTAAATAATAACTCTTGAATAGAACTCACTACTTTATGGGTCTTtggtgggatttttaaaaaacaaattctgcaCAAGGGAtgacattaaaaaggaaaaa--tcccCATAATCTGATTTTCCCCCTATGCAGACATTGTATTAGTTTCCTTTTATTAATCTAAGCAAT-AAAATCACTTTGACACACTGTCAttacttcttatttattttacacatATTTCCAAAAAAGGATTTAGGGTATCCATTTTAACATGCTGTAAGAGT-TTCACAATTTGGTTCCCTAGAAACAGCCGTGAAATTGAATATATATAGCTAAGCCCTGGCTAACCCACTACAGAGCCAATTCcttctgtgaaaaataaataaaagtgtttaTTACATGCCCAC-ATACTATTCTGCTCAAATAACTTCTATTAAAGCAGCAATTAAGCAAAGTCAAATTTGACTTATGAAACAACTGACAGCA-AATGACCTAAGAGTAAGAACAGCCTAGTCTGTGAATGCTGTATACAGGTTTTAAGTCGTTCCTACAAATTTGTAATACACTTAGGGGACTCAAAAATGTCAAAATCATAACTGAAGCCCTCACCCAGACTCTCTAAAAAA--GAgtgcctttccttcttttccttctc-----------ccttttttttttctcccttcaagACTGCTTGAGGAGAAC--GCTAGCAAAGACTTCCCGTTTAGCCTGTTAATAACTATCA-AAATATTCACAGTACTCCCTG----------CTCTTCAGATCGGCAGGTTTTAGCATGCAGACCTCATTCTCAACCCAATTACCTGGATATGAAGCCGGAACCTAGCAGCTGTCACAAAACACCTATACCA-TTTTAGGAAGGCATTGCTATCAATAACCAAAAACGGGGA-------------------TTTTTATCGCAGACAATATGTGAAATTGCACCTCACTGACAAAGCCACTGCAGAAGCTGGATGATAATATTATTATAGTAATTACCATATGTCTTACATCAAATGAAACTCCAGTTTTATTAT---CATTCAGATTTTCCAGGAGGAGATAGGAGAGAGCTGTCACAGTGAGACAGAGAGCTTGTCCTCTATTCAACAGTCAGCTCCCCTCTGCAACAAGGGCTTTTTATTCTATCACAGGAAATACAATTATAACTCCATTTGCATTGAGAACAAGAGGGGCCCTAGGTTAATTACAGGTAAGGTTCTGTTTACATTCCCTGGGGCTAGCCACAGCCAGATCCCATTTCGGAGGAGAAAAAA-----GCAGCCCAAGTTTGAACTAAATCCACA--------TTTTTTATTCCTCTCTTGCATTGCAGTCTGGCCAAAGGGAGCCTGTCACTCAGAGATCTTTCAAATGTAACCTCAGAAGCCTTCACTTTTCAGAGCTGGAATGCAGTCAAGGAACTCCAAGTTCTGAACCCAAATATGAAACGAAAG-----ATGGAGGTTTCAGACCATCCATACGAAGATGGGGGAAACAGAGACAGTGGCattgtatgtattatt-tattagCATCCTGCAATCAACTAAGATAGCTTAAAATC-TAAGATAAAGTAGAAGCAATAACAGT--AGAGCCCTGGATGCCAT

a score=11658
s chr3           152932920 602 + 160039680 AATCCTTCCCCAAGTTAGATGCTTGAGCTTTCATTTTTTAAAAAACATTTCTTGCAAGTCACCTACACACAGGAGCAGGGAGCTGTGATCATGTAGAAGAAAACGCCTTCGATGTTTGCCATTTATCTTTAATCCTTTTCCCAAAGAACCTACTAGAAAATACTGTAATTAATTCATCAGAGTTTCA--CTCTTCCCTCCATCTATTCTGGGGGGGGGGGAGATGAGGGTAAGGAAAAAGGAATCATAATAATAAGCCATTAAAAATTGACCATATGCATTTACAGTGACTACTACTGCTAGTCCC----AAATACGGATTATATATAAAGCTGCCATTTAAGGA----------------------CTTCACAGGGCAAAAGACTAAGTGACCGGCGGATTTATTGATGCAGAGAATG---CTTGACCT-GCATTTTGCAC-----CAGAGTTGCAAGTGATTTATACATACAAGCAACGTCATATCAACACTGTCAGTGAGGTGCTACTATGGTGATGC--TGACTTTGCTAGATAATAAGGCCAGAG------------TTGGAGTAAATGGCCAAAGGCTACAGAAGCAGTGGGGAGCGATCAGTCTTAGAAG------GGTCAGCCTGCCTCCTACCCT-AGCCTCTTTCTTTCC
s HiC_scaffold_1 139786013 615 + 233722169 AAGCCATCCAAAGGTTAGAAGCTTGAGTTttcatactttggg-----tttctttcaAGGTAGCCACACAAAGAAACA-----------------AGAATCACACAACTTGTAGATCTGCCATTCATTCAGCATCCTTCTCCCAAGAAGCCTGCTAGAGAGTCATGTAATTAATTCATTTGAATTTCATCCCTTTTCTTCCATCTGTTCT---CAGGAGGAAGATAAGGGTGGGTAGAAGGGAATTAGATGAATAAACCACTAGAAA-TGTTCACTTCCTCAGACTACAATTGCTACTACTGTTCCCTGAAAACTACAGGTTATTTACAAGGCTGCTATTTAAAAACATTACTTCTCTACTAGTTCTGCCTCCCAGGGTGAAAATGCAAGTGACCAGTGGATTTACTATGGTACACAACAGATCAAGACCTGGTACTCTGTGCAGAGGTGGGGCTCCGAGGGATTTAAGCTT-------TTGCCAAAACAATAGTAT--GCTAGGGATCCCT----TGATCCTTTGATTTTACAAGATGCTAAGacaaaagaaatcaagacatACTAAGTAAATTTCCAaagcc-----aggaaggaaggag-gctCAGGACATGAAACAAAGCAGTCAGCCTCCACTCTATGCTGAGTCTCATTCTGTCC

a score=16688
s chr3           152934940 1191 + 160039680 TGACGTGTTAGGCACGATTTAAAGAATGCCAAGTGTTCCCTTTCAGTAA-----CATTTGCCAGAGCGTGATTCTGGCCTGGCATACTATAACGGGAATGGCTGTAACGCATTACGTCACACAGACAGTTGGCAAAGGATGGACGTGTGAGTTCAGCCTTCATGAGGAATCCCATTAGGACAAGGACGTTGACCTTTGTTTCCTGTTCGCTCCCTGCTCTGAGGGGAGGAGGGAAGCATCTGAGCTCCGGGTAAAACCTGAAACTATTCTCTCTCCTTCCTTGGTAGTGGACATGGCGCAGGATAAATAACT-----ACCAAACGATGAACAGGAAGCCTGTCTCAGGCTTGCTCTGCCCACGCTTACTCAGGGTATCCCCATC---------------CCATCAAGC-----ATCAAAGAGGGCACCACTCTTCACATGG--CTCCGAACTGGTCCTCACAGTACACAGTTGATCTTCTAAAGGGCAGCGTGACACCCAGTGTTTACAATTATGCCAGAATCACAAATAAGCAACTTTTATAGTTTCAGGAACAACCTCTACGGAT-AACTCATTAATCAAACATAAGTGCTTAGAGAATGTGATAATGCCATACATTAGACAGGCATAAAGGAGACGGTGACATTTTATTCTTGCCAAGAGGAACAAAATGAGGTAGAGATGATTGGAGACCC-ACAGTTAGGGGTGAAGAAAAAAAAAACATGTCGCATCCCATGAAAACAAA-------GGCACAAAGGAAGAACATGGAGGCCCCATTGCAAACACAAGGCCGTGGAAC-CGCAGATTGAATGTTATGTATCACAGT-TCTGTCA-----AGAGAGAGAAT-----TCTCCACCCGGGGCTA------------TTTTTCTCAATATGCATGCATGCTTTTACATTGTAGAG-----------------------TTGGTCCTTGGTCAGTCTTGATCACTTTCCCAACAGTGACAAGAGA-AAAGTGGTCTCACTTGGCTGTTGA------------------GTGAGGACCACAACTCCTCTGTGTTTTCCGCCATCCCCTCTGCGCTCTCTGA-----------TCCAGCACTATTTATAGTCCTGAGAGGCTGAAA--GTCTGTCCGTGCGTGCAACAACAGAGAAGCAATAGGATTTCTAAAATACA-TTTGTGTATCCATTAAAATATTACCTGAGAGTCTTTAAGGATGTAGGAAGAGACACGT-------CTTACAGGCA-----------------CAAAGCCTGAAATGAAATCAT-TAGGTACTATCTGAAGACATTACGATCTCTATATA
s HiC_scaffold_1 139787756 1259 + 233722169 TGACACAGTTGATATGGCGTCAATAATCACAAACTTTGCCTTTTGGTAAAAGCCCCGTTTCCAGAG-GGGATTTTGGTGTGGTACA-------GGGCAATGCTGTAATGCATTACATGACATTAAAAATCAATCAAGGGTGAAAATACAAGTACgga----atgaaaaa---catt----ttaagctGTCACCCTTTCCGTTCTGTTC----------CTTAGTAGAA-AGCGAAACAACAGATCT-------AACCATGAGGCTGCGCT------------GGTACTGAA-GTCCCCCAGTGTAAATCACTGAAGCACAGCAAAGTGAGGCTGGGGCCTCGGTGGGGTCCTCTGGGACGGAGTTCTTCCAGAATGTTCCCATCAAACTTTGCTGTCCTCCAATAAGCCACATATTGAGAAGATCACCACTTTCCACTCTGAACCCCAATTTGGGCCCTACAACATATGGTTAATGTCCTGGAAATCAGCAGAAGTCCTGAGGTGCACAATGATAGCAGAATCACAAATAAATGGCTTTAACAGATTTAGGAATTATCTCTATGGACAAACTCATCAATCACATTTAAATGCTTGAATACTGCACCAATGACATTTATTAGACA-ACATAAAGAGAAAGGCTGCATTTTATTGTTGCCAAGAGTAACAAAA-GTGGTGGAGATCACTAGGGACCCTAAagttaaggat----aaaaagaaaagatctcaTTTCCCATTAAAACAAAAGGGACTAGCACAAA-GAAAAACCTTGAggcccaattaaaataccaagtCTACAAAACACACAGGTTAGATGTGCTG-----CAGTCTCTGTCACttacaaggaaaaaatatttctccCCCCCAGggggaaaaattaaattcttatcTATTAATAAAAATCCCAATTTTTGTGTTAACAAGAATCTTTTTCAAGACCTCACAACTGGACCTTTGCTAAATCTCTGTC-CTTTTCTAACAAGAATAAGGGGTGGAGAAGTCTCACTTTGCTTTTCATCTCCCTTCTCTAAAATTTTGAGAACCAGTGGtactttactttt-----cttcttctgctCACCATCTTACTATACAGCAGTCCAGCACAAT------TATTGAGAAACTGAAAAGGTATAAACAAGC---CAGTAGCCAGGAAATAATA-TAGGCCTAAAATGTACtttgtgtatttctttaaatattttcacaaaatttttaataacacacacacacacacacacacacacatacacgaacACAATGCAAAAAAGACCAAAGCCACATGTAAAAATATATAGGTATTATTTAAAGGTATTAACATCCATGTGta

a score=17744
s chr3           152939172 683 + 160039680 acatgcatacaagcacataccacacacacacaccacatacacacgcacacacCTGCTTCCCCAACCCTGCAGCCATCTATCTCTCTC-CTCTTTAGTATCACAGTGGGGCTGATTCCCCCCACTCTGTTTTGATGCTCATCTTAGTATGCTCACGCTGCGTTTATTTGACCATGTTTTCTGTAAGACTTTCACTCGATACATTTGCTAAGGGCCTGGAGTGCAGCATGTAGTAACTTTGCTTTGGAATGGCACATTAATTT-------TTAAAGCGGACACATTACAGTT-CTGTGAATATCTGTGTAGTATTTACTAGATGTGACAGTGCATGGTAGGACCTTGGAATCACGCTTTTTCCA-------TCATTCTGTGTCCAAC------CCAGAAGCTGA---------ACCTCTGCAGGACTAG-----AGACTGAGTGATAACTTCACTATTCATGTCTAGTTGGC----AACTCATGCCTCCCATCTGGGCTGCTCCACATCCTGTCCCATGGCTATAAAGTTCATATCTACCCTTCTCTGATAGCCCCCCTAGCCCCCATCTTCCTTATATCTTTGCTTTGCATTATGTCAAGTTCAAAACtttaaaactcagcttctttc----gaaataagtgtagactctaatacagttctgaagaagagtacagagagcctgtgttatgctacactaacattccttgctagtagcaccttgcaaatg
s HiC_scaffold_1 139791477 692 + 233722169 ATGTGGACACAATCACA---CATACAcgcctgccccctcccc-cacacACATAAATTAAGTCATCTCAACAGCAATCTGTCTCTCCCACTCTTTGGTATCACAGCAGGGCTGATTTCCCCTACTTGGCTCTAATGCTCATTTTAGTACCATCACGCTGTGTTTATTTGGCCATGTTTTCAATAGGATTTTCATTTGATGCATTCACAAAAGCCCTGGAGTGCAACAAGGAACAACTTTTCTTTGAAACGGggcaatatttttaaagagttgaAACGGATTCATTGTGGTTCCTGGGAAAACCTGTGTGATATTTATTAGATGT--TAAGAGATGGGCATATCCTGG-ATCATGTATTTCCAAAATATACCCATTAAATGTCTAATGTTCTGCCACACATTCATGACATCTGTCCACTGCGGGGTTGGTGACCAAACTGAGTAATCCTTT---TATTCATCTCCACTGGGCAAAAAAATAATACCTTCCACATGGCTTGCTCCAAATCCCAACCTGTGGCTTTTACGTCTCTA-ATATCCTTTCCCGATCTGccac----------tctttttgttttgtttccttttcattatgtcatat---aattttttaaaataaccttttttcccttgaaataacCATAGACTGATGTGCAGTT-----AAATAATAGAGATGGGGTGCCTCTTAC------AATACTCCCCAATTGTAACAACTTGCATATG

a score=42467
s chr3           152946732 2028 + 160039680 ttttacGTTTAAGTTGATAAAAAAATCATATAAGTGTTTCACCAATTACCAAACTGATGATTTAGACTAGAAAAAAGTA------AAATCCCCTTATCTTTGTCTCCGGGGAAGTGTTAGGTTGATTTCTTTGGGCAATCAATGCCGACAGCTAGCATGCTACCCTCTGGGATTACTATATTTATGTGGCTTGTATTTTTTCTCAAAGATCAAAAAAAATCATGTACCTTTAACCACAGCAATTGTGACAGTGCGT-ATCGCTGCCTGCATGTTCTAATTCCATGATTGCATACATTTGCACAAATTATATAATAAGATGCAATTATGATAATTACAGAGGAATAGGCAACAATTGAAAAAAATTACAAAGTGCCCCTAAAATAACACTAAATTATAAGAAAACCAGCAGACAAACCAATACACAAAAGGAAAGTGTTTGAAGATGAACCCAACTGTAAACCAGCAAGCATCCCAGTGAGAAGTCGTTGACTGAGCACACTGATAGGCGTGCTACGGCAGGACAGACCCATCTAAGGATAAAGT-----------ATTTTCATTACCGT--------GTGAATGGTTAACACCGTGACTTTCCAAAACATATTATGACAAGAGAACCCTTCTCCTCGCTTATTTCTTATTGTTACTTCAAAGACAAGAGGAAGGATAATTACTACAGTCATAAAGCACAGACAACTCTATGGAATTTTAAGTA-GGATGAGCTGGCTCCACTGTGATTTTCTTGTCTTTTTCCCTATCAGCACCGTCTCCAAGTGCA--TATCATGTTCAAGGATATATAGCCTGAGAATCTTTGTCTAATA---ATTTTCTTCTTAGGAAAATCACAGCCGTAAGACAAATGACGTGGCTCACACATTGGAGTCATCTATAAATTGTCGC-----GTGTTTTATTTACATCCCAATTTCTCACTTTGCTTTATATTTCAGACAAATGTCATTAATATAAAAATTGGGGAGCTTGTCTCTTTGGTTTC-TTGTGCAGTTATTTTATTGAATCCGTGGCTACATCTTGGCAGACCATGACAATGAAAAATTAACACCCTGACAGGCTAG-----AATTC--TTCACAAAGCAACTTAGATTCATCTCCACACTGTCCTTTTTCATAGTCCCTGCCTTTTCTAAGCACTGAGCTGAGTTTCTTATTTACTATATATGCAGTGTTACATGGTAAGCCCGTGTGCTGGGGCTTCCCATCAACATAACAcccactttacagatatggaaact---------gac----tccttatggagagatatgccagaggttacaaagtacttgagtcaaaatgtgaac-----cagtcaacagttttg-----tgacttcaagcagtgcACAGGTTATGAGGCTGTGGAGGTACAAGGTCATGCA------GCTCCAGAGGTGCAAAGATGGATGCAGCATGGCGGCAGCAGAGATGTCTTATAAGTAACAGAGACACAGACAGCCACGATCTGAACAGAAAGTTCTGAGATGCCTGAAGGTTTTTACCATGAGACCAGGGCAGCACCAGA-GCCCTCTTAGGGTGGTCCCAAAGATGCTCTATGTATTTTATACCCTGGA----AACAGAGTTTTAAAAAACACTGGGAAGTGATACTCCA-AAGGCAGGGTGAATCAGATTCCTTGATTGTTCAGACTAACACATAATCACAT-ACATATGCTTTCAGGTTTTCAGGGCAGTGATGCACG---------CGTGAAACCAAACGTACACTGATTAGATGATTAGTGGTAAAatgtatttatt------acagcagatggtcattaagcatcgtccctgggtcagtcactatgcaaggctgcgagagcgtgagaatgagtaa--ccaggaagtgcct----gcctttgtgC---AAGTGC---ATACTCCTCCAAATAACCCAGCGGAGCATGTGCTGTATTGTGAAAGG------AAGGCAAGGTGTTacacacacacacacacacacacacacacacacacacacacacGACAGCTCCAAGCACAATGGCCTAGAGAAAGGAAGACCTAAGGAGATGTTGTAGAGGA-TCAAGTGAAGAGGAAAGGCAAGAGCCTAGTGTCCGGTGCTAGAGAGGAAAATGC
s HiC_scaffold_1 139798914 1961 + 233722169 ttttatgttttattgga-------aTTTTAAGAGCATtttgccagggattgaactggtAGTT----ATAGAAAGaggcacaaaacaaaacctcttatctatatataattaaaatagttTGGTTGAATTCTCTAGGCAATCAATTTAGACAGCTAAAATTCT----CCTGAAATGActacatttccat--ttttaaatttttttcaaagattgAAAAAA-TTATACATCTTTAACCAGTGCAATTGTGACACTGCATTATCACCACCCGCATGTACTAATTCTATGATTGCATATATTTACACAAATTATATAATAAGATGCAATTACAATAATCACAGAGGAATAGGCAACAATTGAAAAAAACTACAAATTTCCATtaagagaatactaaaagatatgaaaatcatcaaacaaaacagtaggaGAGAAGAAAATGCTTTAAGATGAACCCAGCCATAAAACAGTAAACAATCTAGGAAAACACTTTAGTCTTAGCAAATTGAATGATGCTTTACTGGGAAACTGAAGT-cctaa----aaagtttttctttcaaattttcctCCTGGTTGAATAACATGAATGTTTAGCAACATGACTGTCCTAAACATATTATGACTATGGCACATTTTCCCATGGTAAATTCTTC---TTATttca-----aagaggaaggaaaattaCTAAGATAACTAAACACAAACACCCGTATAGATTTTTAATTATGGAAGAGCAGGATTTGTTATGATTTTCTCATCCTGTTTTCTGTAAG--TTGTCTTCAAGTGTACCTCCCACTTTCAAGGAC-TACAGTGTGAGAATTTGTTTGTaggatttattttccttctaggAACA-AATATCTGTAGGACAAATTGTACA------ACATTTGGTTCCCCCATAAATTGTtacatattgtattttatttatagtcCAATTTCTTACTTTGTCTTGTATTTCATGCAAGTTTCATTCATATAA---------AGTttgcctcttttatttctttttgcaatTATGTTGTTAGATTTGAGGCCACAATTTGCT-----------------AATTACCAACCTGACATACTGGAAAGAAACTCAGTTGACAAAGAAACTCagatatttgttca----------ttttattgtatttgtagTTTTAATATACTGTGCTGATTT--------------TACACAATACTTCAGGACCACCTTGTGAAATGAACTTTTCTAGTAGCAGAATCTCCATTTCACAGATACAGAAACTTGAGGGTTGGACAGCGTGAGTATGGAGAGAGTTATCAGAGAGTACAAAGTTGTTGAACCATCATGCAAATTGGCATAGTTGAAGCATTTAATGACTGACTCTCAATTCTGCACCAGAAATGAGGTTGTGAGGGTACAAACACAGACACGACTTGTTCCCTACTTG-----------GTGTCTTAGC-----CCTTGATGTCTTACAAGTAACA-----ACAAAGATTCAGTATA-AAATGGAAAGTGCAGAGAGACCTGAAGAGTTTTAGTAAGAAA-TAAAGCTGTTTTGGATACTTTCTTAAGGCAGCATtag----gttttttgt-tattgtacCATACAGCACACCGCAGTTCCAGCACACACTGTGTGGTGATGCTCTACACTACCAGATAAAGCCCAttccttaagaaataaaattaacatgtcatttcagaaaataaaatttcagtttcttagaGCACTAATGAATGGCACAAAATTGTAAATTTGTTAATTCACTGATGACGTGATCAGAAGAGTAATCTAGGCATTCACTCAGGAACAGAGAAGTATGAAGTACTGGCACTGGGTTACGTGCTAGAGCAGACTGGGAGA-TgcaagaatggataaagaaaagaagcGCCCTTCAGATTTGGGGCTCAGAGCGCTCAGTACACAGCTACGGGGCCCATCGGGG-----GCTACA---TGAAAGGGGATCAGAGGCAAG---------------------------------------------AGGAAGTCTCTGAGCCAGATGTGCCAGAGAAAG--AGATCTATGCAGATGTTATGAAGTAGCCAAGCAAAGAGGAGGGGTAAGATCGCAGCGTGTGGAG-------GGAAACTGC

a score=17063
s chr3           152951625 1007 + 160039680 acacacccagTTTCCCAACACAGTTTCTATCTTTGAAAGATATTCTTGGCTCCAGCTGCCAATCAGAAGTACCACCATGTGAGTCTTCTCAGACCCACA---------CAAAAAACGATCCCAACCTGGTGGGACAGCTCTCTACTTAACGCAGGTTTTCCTCTAAAACTTGACACT--GATTGCCATTCATTCTCTTCTCCCCTCTTAGACAGGCTTTCAAGAATAATTATCTGATCAGGAAGTTCAGAAGTTCAGCTATTATTTAAGCTGCCTTTCTTAATTCAAATTCTGACTTCGCTCCA----TAA-AAGACAGTCCCACTACATTTCCTCCTCTGGGGAAATGGTTCCTGCGCGAGACACTTCTATCA------AACTCTGCAGGGAGGAGCCTGAAGAAGGACTTTCTTCTAGATGCTCACAGAAGTCTTACTTTG----GGGAACAGTGTGCCTCTTTTATTACCACACTCTCCATCTTGAGAGTGCTTTCCACTTGCCTGGGTTAACTACCCAGGAGACACAAACTTTATCAAACATTTTTTTTTCAAACATTAGCTTGGGGATTTGTGTTGTTAGATAAGCACTTAAAA-CCATTTTCTGCTCTTCGGTTAAGAAATAGGAAACGACAAG------TGTGGCTTTTCTACCTCCAAGATGAGATGAGCTTTCAGGTAGTTGGGTCACGCTAACTTTCTGCATACA--CAGGAAGTCAAGTTGA---TTAGGGAAGGTCACAGT---GGACAGATTCTATCTGAACCAGCTCCCCACAGCTAAAAACCCACCCCCTGCTCTGGGTACGAGCACTGCAGGCAAAGCAGAAGATGACACAAGACTCATTCTCCTTGT----------TTGCATTGATCAAACAAACCCAAGTGTACACTGTTGCAGTTCTTG------TTTTCTGGACAATCCACACACGAAGCCCCAGTTCGCAAATGACTGGTATAGGAAACAG-GCTTTGTTTTAGGGGAGCAATTCCTCAAAACAGAACAGACATTTTGTCTTCATGAGTAGAAAAGTTGTGCTTAACTATAAT
s HiC_scaffold_1 139805060  999 + 233722169 ACACACCTTGCTTCTTAAGAGAATTCCTGTTT-------ATATTCTC--------TTATCAATCATCAGTGTCTTCTTATAATTCTTGTCATGTCTGTATTCAACTATCAAAAAATTAT---------GAGGGA-AGTACTGCATTTAATGATGGTGTTCCTGCAGAATTCAACATTTTAAGTGGCATTAATTCTCATCTCCCATCTTCTACATACTTTCAAGAATAATTATCCAACTAGGAAGTTTAAAAGTTCAGGTATTATTTTAACTGCCTTTCTCAATTCAAACTCTTCATCTTATCCAACAGTAATGAAACATCACCACTTTATTTTTCCCAAGGAAGAAGTAATTTT----AGAGACA-TTCTATCAACAAACAACATTGTA---AGAAACC----AAGTGGCTTTATTTTGGAAGGTTTTGGAAAGCCCTCTTTGTTTCGAGGTCA---TGTCACTAATCTTGCAACATTCTCCATCTTGAAAG-GATTTTAACTTGGCTGTATT-ACTGCCCCGTAGAAAAGAAAGtgtccag-------tttttaaaatattatctaaaaatttgttgttgttatgtgaGAACTTAAAAGTCATTTGCTCTTCCTCAAGAAAGACACCGGAAAAGGAAGGACTCATTAGGGTTTTTCTATCCCCAGAAT--GATGAATATGCTTGAGATTGgatcactttgttttctttcatgcaaTTAGGTCATCGAACTCGGTCCTGATGAGAGCACCAGTCTATAACAGCATCTTTCTCAGTC--TTGACATTAGCTCAAAG---AACTGCTGTGTTGCAGGGAAAAACTGCAGCAAATGGAAGAGATGA---ACGTATCACTCTCCTTGCCCAAATTTTGCTGTATGCATCAAATCAACTGGAACACATCCTACTTCCTTTGCTGGGAAGACTTTCTTGATAACCTGCCCATGAA-CCCCAATTTGTAAAAAACTGACTTCAGAAACTGAGTTTTATTCTATGCAAATAACTCTGCAATACAAA------GTTTTATCTTTCCAAGtggaaaacttatttttattcattat

a score=23473
s chr3           152960345 760 + 160039680 TCCATCTCTTCT--AGCCTTTTGTGCCTCTTCTGTGTCTCAGTACACTACGTCCATCCTCCTCTGACGTGACA-CTGGAACCTGAGACCATCTGTTCCTctttccttcctttcctttccttcccttCCTGTTAACACACTTTTACTAAA-CTCTTCCTCCAGGCAAAGCTGTCTTTTGAACACTGGGCCTCTAAAGCTACACAATCCCTAGGGTAG--ACTACATTTTCTTTTCCATTGTGAGATTTCCTGTGCCTGCCAAAAGCCCAGGTATAAATTAAAGAGAGAATGCATAAATGATATTTAGAATGCAAACCCTTCCATCTAGGAACCGCGCACGCTTCGGGCGATGGTGATAAATCTGAATGCCCCGGCACAGGATGTTTGTTGTAGAGAACAAACAGGTTATGGTGAACAAGGGACACGCGCTAATTCATTCCGGGGGAACTGCCCATGAAGCAGCCAGCGGCATTTACTACCAAATTGCACATTAAATCCCCTCTCCTTTCTTTGCAAAACTGCACAGATTGAGGTTAAAAAA------AAATAACGAGAGTGATTTGATTGTGCGTGCATGCCCACCATGTTTACTTTATGTTGCTTCCTTTGCTGCCTAAAGAGCTCTC------------------------TCCTGCATTTATTCTGTATGAGTTGCAAGTGGCGTTCCTTCTTAAGAAGCACAGGCAGCGTGTGTTCCTCAGACATGGC---------TTCTGTGCTCTGCCTCATGCTTGCAG-GCTTCACAGAGGAATCACATCAATTCGGGTGGAATATTT
s HiC_scaffold_1 139817542 771 + 233722169 TTCATCTCCTCTTGAGTCTTCTGTACCATTTCTATGGCTTAATGTGCTACTTCCATCTTACTCTGGTATGAAGGACGGAAGCCaagtctgtccatttctctgtccttccctcctcttctttccttccctcttaaTACACTTTTAGAAAATCATTTGCTATATGCCAAGCTATCTTCTAAGCACTGGATCTTCAC--TTACAGAATCCGGAGGGTAGGCACTACATGATTTTCTT-ACTGCTAAATTCCTTATGCCTGCCAAGACTGTGGGTATAAATTATAGAGTGAATGtataaatgatattaaaa--gaaaGTCTTGCTGTCTAGGAACCTCAGCTACTTGGGGATAAAGTCATAAATCTGGACATTCCAGCACA---TGTTTGTTGGTGAGGACAAACACGTGACGA-GATCAAGGGACAAGCATTGATTCGCGT-GGGGAAGCTGCCCAAGAAGCTGCTAGAGGCACTAGCTACTAAACTGCATGCTTAATCC-----TCTTTCTTTGTACAACCAGACACATTGAGATaccaacattttttaaatagc--------ttTGATTTCTTGTGCAGGTTTTATATGTGTAATTTAAGTGG-TTCCTTTATTGCTTAAAGGACTCCCGGTACAgggaatttttcctttctttccaataTTTCTTTTGTATCAGCTACAAGTGTCTCACCTTCTATAAAAATAC-----TCATGTGT------GATGTGGCCAAAAAGTTTTCTTTGCTCCACCTCAAATATGTAGCGTTTTACTTAGGAGTGGGATTAATTTAGGTGAGATACTT

a score=6548
s chr3           152967075 389 + 160039680 TCTACGCACATTGTGATAGGTATGAAGACTTCCATAAGGAAGCGTACTAAAATACCAAGGGTAATTATGTTTTAGTGAGAAATTCATGAGTAAGGCTTAGTTTTTCTTTACCTCTGTCACGTT--------GCCACGCACACCCACATA--TACTATAGGGAAAAGACTGATGTTCATTTTTTTTTTCAAAGTAAGCAA-----------CCTGGTTCTT-TTTCCT------------------GGTGTATGGCTTCCAA-----------------CAGAAGGGACTCTGTGTGCTGTACTGTGGTCTACAAGAAAGGTCTGGGTGAACTGCTGTTGAGCTTGTGTGTCCATAGGTTGGCATAGAAACCTAGGAAATGCATAGAGGAACGCCTGGCTGCTCTCCACCCTTGAGACCTTCCAGAGGTCTCACTGTTTTGTGGATT
s HiC_scaffold_1 139823854 418 + 233722169 tctgtgtgtatcttGATCTATGTGCAGACCTC--TAAAGAGG----------TATCAATAGTGACTATGTTCCAGTG-GAGATTTATGA---AGactcatttttacttttcccttttgtCATTTGAAGAAGACAATGAGTACTTGCACAGCTACAGTTAGGAAAGAGGTGATGTTTACTTTT-----CAAAGCCAGCACACTCTGGCTGTCTTGGTCCTCACTTCCTCTTTGATCTGCTGAGGTGAGAGGAAGGCAGCCAAGCTTTCTCATCCTTTCTCATCGGGAGCTCACTGAG-------GTGGCCCACAGGCAGAGTCCGCAGGGAATACTGATGAGTTCTGGAGTTTATACAGTGGCACTGAACCCCAGAAAACACATAAAGGAACATCTGGCCCCATTCTATCCTTCCATCCTGCCAAAGGTTTGGCTGCTCTGTGGGCT

a score=39267
s chr3           152968800 1631 + 160039680 CCCCTTTGGGGATGTAgctttcaccagacacc------caatgacc-------atcttagattcctccctgcacagctgtgaggaatg----tctgctctttataagtattcctatgatccaggactctattataagagcacaaacgAGGC-------ACCATCGCCTGCCATTGCTGTAGACTCACTGGGACAAGGTACCGTGCTTGCCTACGTTGTCCTTCTCTGACATCGATGTCTGAACTTTGGACTTAGGAATTCATCACGTGGTGAGCCTACATCAAAACCCACCCATGTCTGG-GGCAGGAGTATGACTCCTCAGTGTCTGGGGCAGGAGCATGACTCCTTGGGGTCTGGGGCAGGAGCATGACTCCTCGGTGTCCATCTGTGGCAAGTGTAGGTAGCACCAGGGCTGAGCTTCTCTCAGCGTGGCTGTTGCTGAAGCAGATAGGATGGGAGTTCCCACGAGTTCCCACAATCCTCATCTGCCTTCCTGCAGCCTAGAACACACACAGACCATTACCACTTTTTGTGCATTCCTTGTTCAAAACTTGTACAAGTTGAATAAAACTGAAGAGAATGGGTT-TTATGACTTTTGGTGTGGAGTGGGAGTTG---------CAGGTAACTCAAGACACCTTGCATATGTCCCCGA-AGCCGCCTGGCAGGTGCAAATTGCTGAATAACTCCAAATATGGGCCCCATAAACCTGCCGTTCATTTAGATGTACA--GTATGTGTTTGTGTTTCCAATCAAATAAATGCCATTGGATGAATTAAGACCAAGGCTTCCTCTTGACAATTTTTTTGTTACTTTATGGCCAATTTCTCTCTGATGAAACTAGAATAGAACCTTCCCTTTCCTCAGATGTCGTTAACAAA----GGTGATTTCAAAGAATGGTAATTGTTCTCTCTATAGCTAAATGGGAAATGAGAGGCAGGAAAACCACCCTTTACCTTACTCTATGAAAAGCCCGTGCCTGGTAAG-------------------------------------------------TCTGCC-ACCCCACAGAGAAGC-GAAACACTATAAAGTCCCCAG-AGTCCCTTCACTCCAGGTCCCACCGATTCTGCTGCAGGCGGGGAGCTTAATTCTCATTGTCACCAGCATGCATTATGCTGTCTCTGCAGACAGCCCGCTTCAGCCCTAACCATAACATCACGGCTTCCTGTTTTGCTCAAGTCGGCATGAGGCATTAAGATACACAGAAAGGTTCAAAATTAGACAAAGTTGAGCTGCCATCTGGGATCA-TCTGAGACTCTT-TCGGCAGCCATTGAGAGGCAGTCTTGAACCACGAACCTTCTACAGTTGAAGAAGCTGTATTCCGACTGTCTGAGCATTC-----TAGGTGGCAAGCTCAGAATCTTCACGCAGGCAGAAACCCTAGCTGTCTTGATCCCCTGGCTGCCAA----------TGTCACCGACGCTGCCCGTAGCACTAGCGTGCTGCTGTGAGCAGCAGGCTCTCTGCCCTGTAACCAAGAGCTACTCTAAT---CACTATACCAATGCCAGAACGACCTAGCTGAAACACACATCTGAGGTAGTTGCTTCTCTACCTCAC-----------------AGTGATTTCGGGATAA-ATCCAAGCTCTGCAGCATGTTCACTGTCCTATCCAATCCTC-CAGTTACTTGATATATGTTTCTCTGCCTTTCCCTGTGGATGTGAGTCTCAGAGTTGGGGGGGTCA
s HiC_scaffold_1 139824865 1638 + 233722169 CTCCCTTCCAGATGCAGCCCTCACCAGTCACCAAGGCTCAGTGGGCTGGGTGGATCTTGACTCCCAGCCTCAAGAACagtcagaaataaatttctgtcctttataaatttt-----------aaattctgtaatagccgtataaaataaacttaaaaaataatcccTT--CACTACTACAAGCTCATTCTGTCAGGATACCTTGTTCAT-TGTGGTATCTTTCTCTGACACTGATTTCTGAACTTTGAGAGTAAAAACCCATTGCATCTTCAGC-TGGGTCCCAAAGCACCCACATTTGTTAATAAAAGCA---------------------ATAAGCAAGATTCATTAGGG----------------GACCTT-------------------------------------GCAGAGCTGTCCCCA-------TGTGGCTGGAGCAT-TGGGAGTGGGGACCACATAAATTCCTATCTTCCATTTCCCTACCTCTGTGTTCCGGGACGTAATTGGCAAATGCTCACTTTCCACACTTTCATCCTTCAAAGCTTACACA-GTGGAATAAGAATGAAGTGCATGCGCTCTTATGATTTTCAGTA--GAGTGGAAGCAGACGCCACGTCAGGTAATGAGAGACAACTTGGATACGTCCCTGACAGCCATGTGGCAAGTGTGGTACCACCAATAACTCCAAATATGCATCCCATAAACTTAAAGTTCATTTAGATATACTATGTACATTTTTTTGTTCCCAGTCAAATA----CTTTTGAGTGAATTAGGAGCCAGGTTCCCTCTTGACAAATTTTACATTACTTTATAGCCAATTTCCTTCTGAGGCAAGTGGAATGGAAGCTTTCCTT------AAAGTTGTTAACAAACTTAAGTGATTTAAAAGAATGGGAATTGCTCTTTCTATAGCTATGTGG-AAATGAAGAGAGAGGAAACCACTTTCTCCGCTAAATTCCAGCAGATCTGTACCTGGTAAGATTTATCATGGAACAAAGTCTCCCTTGACAAGATTAGCCTAGAATAAAGTCTGCCCACCCCACTGTAGAGCTGTTACATAATAAAGTCCCTGCCAGCACATTTATTCCACATCCTACTAGCTCTGTTGCAGGTAGAACACTTAATTCCTGTTGTCACCATCATGCATGACAATGTCTCCACGAACAGCTTGCTTGAGTCCTAACCATAACACCACTGTTTCCTGCTTTGCTCAAGTCATGATGTGGTATTAAGATGCACAGCAAGGTTTGAAATTAGACAAAGCTGAAGTGCCATCTGGGATCAGCCTCACACTCTTGTCACCCAGTACTGAGA-GCAATCTTCAACCACAAACCTTCTGCTGTTAGAGAAGCTGCATTTCAGC--TCTGCACAGACACAGTGGGGTGGCCATCCCAGAAACCAGA-GGGGGCAGAAATCTTAGGTCTCTGAATCTCCTGACAACCAGATGCATCTCCTGACACCACTACT--CAAGATCACAAGAGT-------TTACTAAGTGGTTTGTTTTCCTCTAAACTGGAGCTACTCCAACTCACGCCATGCCAAAGCCAGGATGATCTA-TGGAAACTCCCATCTAATAGAGATACTCTTctaatttactctttcaaagctttcttaaaattttcaggaCAACATCCAACCTCCATAGCATGTAAATATTCTTATCTGCACTGCACTGTAATTTGATGTCTGTTTCTCCATCACTTCCAATAAATATAAGTTTCA-AATAGGGGCAATCA

a score=13472
s chr3           152970475 1796 + 160039680 TTAGGTACAAGGTAGGCACATG----CATATAGCAGACTAAGGAACAAGTGCATGTTGTTTAACAT-CTCTGCAGGCTAACTTAAGCCTAGAAGTTACAT------------AGCTCACTACAAAGAA---------------------------------------CCTAAACA--CATCCTCTTGCTTCAACATCTGGTCCACCATT-TGGAAGG---------------TCTGTGTTTTCAAAAGATTCAGAAATTAAGCCTGGG---------TATGTAAAGTCTTTCTTCCCCCATTTATCATTTTTGTCCATTCTCATGATTAATGAGTCTATTAGCCAGGTTTATTCAAATATAACATAATCAAATGCGGCATGATCACAGCTAGACTC----------------AACAAGGATTTACTGAGATTTG-ATACTTACAAGACA-------------------CAATATGACTAAATTATGT-------TTAAGAAGTCGGGCAGACAAGACTGGGAGACAGGTGAAGAAATACCAATGGAAATACTATGTGACAAAAAATGTGCACAGC-TACAAAGAATAGCTTGGCACTTGCTAGGCTATAT---TGCTAATACAGCCAAGCATAGTACAGTAGCATTTCCATCAGCAATGAAGTCCATACACAG-GGCTGGCCCATAGGATCATGTGACCAGGATACTGTCTTGTTTGCA------TAAGTACATGCTGTGT--ACCAAACAGCAGAATTCTCGGGGTCAGGTGCCCTTGATTTCCCTTACTTCTGCTCTgggcagggcctggtgtttgtcccattcccctttctctgtagtaccgactacatagtaggtgctcaTTGTATATGAGATGAGGGGACTGATATGGGCGGTCTAAAGGAATGTCTCCCTCCTTTGCATGCAGGTTTCTGGGGGAACTTTAGAGAGAAAGCCTTGGTCGGGGTCTTAATAATTAAATCTCTGGCAAACTGAAAGAACACTATTTCTTCCCAAAAAAGATGCGttttcattttaaatatgtgcatgtgcctggcgtcagtatgtgctcatgtgcacctgagtgcagtt---gcccacagagacgggaagacagtgtcatagcctctggagctggagtttacaggctgctgtgagtcacctgtgtggatgt----------------ggaggcccaagctt--gagtcctctgcaagagcagt--gcccgcttttcacttgtgagtcatctcCTGCCCATGGAAGGGTAGTTTCTGCAGAAGGAACAGCAGATGTGTGTAGGTGAGCAAGCTGTGCTCCCGGAGTGTGTGGAGCCTGAGCTCAGAGGAGCTGCAGGGGTTGGGGCTGGAGAAGTAGGTCATGGAGCCCCTGTTGGTCTTCCTAAGGGGTGTGAGCTGGATGCTCTAAGAAATGGGCAGGCACTGGAATGGAAGCTTGCAGGGAACATAAGCCAATCTGTAAGTAGAAATGCAATAACACAGGTCGGTCATTTGAGATGTCCCATATGTGCAATTA-ATTTTCAGAATATGCTTCTTATAAGGAATAATTGTTTAACTCGGCACTTCAGACT---GAGAACTCTCAGCATCTGTGTGC----TTTTCAGACACCGCAGATAGCTCCATCGTCACAAAGACAGAAAATAATAATAACGAAGTTTCCTTCCCATTCTGAGCTGCAAAAACTGTCAAGGTTAATTTCCTCCCTCGTAGTTTTTAACAGGTTTCTTGTCTGCCTGGAGTAATTCAGAATAGGCGTTCCATCTCAGAGGTCAG-GATAGGCTATGGGATTTGCAAAACGACAGTCCTTCAAACTCTTGGTTGGCTGGGTCTCTAGATAGCACCCTCTTTCCTACTGGGGAAAAGGTAATTTCACTGAATGAGTGGTCAGGCTGTAGCATTTCTGCATGTCATTAACTACTATACTCCCTTTGGCCTGAT
s HiC_scaffold_1 139826961 1607 + 233722169 TTGGATATACAGTATGAACACAGTATTATttagtaaatgaagaaatgaataaataccatTTAACCTTCTCTTCAGATCACTTCAGGTCTAAAAGGTATGTCATTTACCAAGGAGTTCACAAGGAAAAAGTGTGAGCACCTGCCTGTCTCCTGTGATACTATACTGTTCTGAAATATGCATCACTGCATCTCCACAGCTGATCAACCATTCTGGGAGGGTCATCCAATGCTGCTCTGTATTTAAAGGGGAAACATAAACTAAAGATAGGCACACGGCATATATGAATTCCTTCTGCTCTCATT-ATCATTCCCATCTTTTCTTATGATTAATGAGTCTACTAGATAGATTTGCTCAGATCTCT-----TCATATTGTACATAATCACAACAGGACTCTGCCAACCCAATATTCAGCAAAG-TTCACTGAGCTCTGCACACACGAAAACCAGCTCTAGATCTGAAGATACCAAGACGAACAAGTCATGTCCTTGGCTCAAGAAG----GTAATCTCCTCATGGAGTCAAGCAGAGGACAAATAACCGCAGTGTTACATGAACGGAGGTGTACATAGTGTACAAAGAAAATTTTAGCACTTTCCAAGGTATAGCTATTATAATATAGTTATGTGCAGCATAATAACATTTTGATCAACAG----ACCCATATATGGTAACAGTCTCACTAGGCTTTGT---CCAAATGATGTCAGAGTAACACAGGTTTAAGTACATTCTATGTTTATGGGATGACAAAAT-----------------------------------------------GGTCTAGTGATG----------CATTTCTCAG---------------AATGCATCCTTGTGGT----------------------TGAGTAATGCATGAGTATATTTATTTCCTT-----ACTGGTTT----------------------GTCATAGGCAGGG--------ATGAAATCTTTTG----------------------------------------------------------------------------------TCACATGCCCCTTGGTGCATTTCTAACACACAGAGACT--------------CAGCCAATGTGACTGGCTGATAGATGCAG----GGGTGGCCTAAGTAAATGTCAGATCTACTCTGCATGGAGGCTGGACCTATAAAAGCTTTAGAAGGAACACCTGAACCAGGTTTCA---GTGAGTTAGTTCTtg----tgaaa-------------caaaggaaaagaggTACCCTGTGAGACAGAAAGCTTTGCTCTCAGGGTGC-TAGAACCAGCGCTAATGGGAGTAGTGGGAGGTGAGGTC------------CAGGCAGGCTCTGTTGACCCTC------------------ATCCTCTTGGCAATGGGAAGCCGCTGGAC-----GCACTCAAGGAGCATAACCTGATCTCTGAT------------------GGTCAGTCAGTGTAGGTGTTCCATGTTTGCAATTAGATTTCCAGAATATGCTTCCTCATAAAGACAACTGTTTAAAT--GCATTTCAGATGCTAGAGAA-----------GGTGTCCCAAATTCCCAGGAACTACACA-ATCTCCTTaaccaagaaaagagaaaatg-tagt------gTTTCCATTTCATG-TGAGCTGCAAA---TATCAAGGTTAATATTCTTTACCACAGGCA--AAATGGTTTCTTATCGGCCACCAGTAATTCTGAGTAAATTTTCCATCTAAGAATGGAGAGGGAGTCAGTGCTAACTGCAGAACGGCAG-------AAC----GGTTCACAGCGTCTCCTGGTGATGTTTTCTTCCC-ACCATGGAAAAGGTAATTCAGCTAAATGAGTGGTCTGGTCGTGAAATTTCCTGAAATAATTAAACATGACACCCCCTTTGGCTTGAT

a score=94587
s chr3           152973644 4737 + 160039680 [encoded data, 5042 characters]
s HiC_scaffold_1 139828552 4406 + 233722169 [encoded data, 5042 characters]

a score=162210
s chr3           152979778 5347 + 160039680 [encoded data, 5702 characters]
s HiC_scaffold_1 139834062 5380 + 233722169 [encoded data, 5702 characters]

a score=15857
s chr3           152986589 560 + 160039680 AGACAGCTGGAACAACATGGCCGGGATTTGAAGCTGGTATGAGTGAAGCAGAGAAGGGGAG------TGTGGATTTAGG-TGTCATCTGTATGATACATCGTGGCGCACACAGTTCAGGTGTTCTGTTGGGCTGAGAGGCAAGACTCGAGCCATGAATATGGAGGGATATGATCATCTG--AATGAGCCAGCACA-----AAGGAGAA-TCCCAGACCTGAGCTCTGAAAGCTTCAAATTTCATGTGGCAAGGAAAGGACTTGTGAATACCAACCACAATAC------------------------TGTCATTTAGGTGGCTGATTATTTCTGATTTGGTTGGATTCTCCATGATAAGGCAGTTAGTCATTTATGTTCACAAAATACTTTTCAAATTCTATTAACATACCAAACATATTTAATCATGTTTATTTCTGTAGTTATCGCTGAACCTCCCTTTCAAACTATATTTTTATAAGAACTGGGACAATGCTCCATTGCTCTC-ATATCTCTCAAGCCTACCACAAACCTGAGAATGGTAATATTAATCACTCATGTCCA-CCATCTATTACTTTGT-----------------AGCTTTACATATTTTAAATCAT
s HiC_scaffold_1 139841671 609 + 233722169 AGGCAACTGGGAGGAGGTGGC-------TGAATTTCCTCGGGGTGGGGCGGGGAGGGGAAGCAGGTGTGTGGTGAGAGGATCTGCTCAGCCTGAGGTATC-TGGAAGTTGCTGCTCAGAGACAGTGTTGAGCTTGGGTACAGAACTGGCATCACAAGGAGGTCTGGATGTGACTGCTCAGAAACAAGTCAGTGCACAGAAAAGGAGAAGTCATAGACCTGAGGCCCGGATGCTCCAA-TTTCAGATGCCAAGAAAATGAATAGTAGCTTCAGTTCAGGATAACAGTAAGTGACGATCTGAACTTGATATGATTTAGGTGgctgattattttcattttgaatggaTTTTGCGAGCCAAGGCAGTTAGTCATTTATGTTCTCCAAGCACTTTTCAAATTCTATTATCATATAAAGCATATTtagtcacatttatttttctatttattgttgATCCTCCCTTCTAAACTATAAATTTTCTGGAACTGGGACTATGTCTTATTACTGTCTATATATACTAAACCCAGCACAAAATTGAGGATGATAATATTAATCACTAGCGTTTATCTACTCCTTACTATGTGCCAGCATTATTCTCAGAGATTTATGTGTATTAACTCAT

a score=24776
s chr3           152995801 2796 + 160039680 ACACCATGTTGGAAAACAAGTATTCAATACAGGGACCTTCAAGAGAAATTCAACCTACATCACAGCCAAAGCATTCTTCTTCCTGCAA---CTCTTCCTTGGATG-CTTCCTTGAActcctttgtacagacaaggaaactaaggcatatactggcatagcgatttgcccaagc-acatataatttatgtggcaTAATTAATTTATTAATGTTT--ACCTTGGCACATAATAAGCTTTTATACAAAGCCTTTGCAGTTATTTTTGTCA---CTATAAAATAGCTCTCCCTGAGGCTCACTGCTCAGATTAAAGTCGGAGACAATCCTGTTGATGGATGAA-----GAAGCTCAGATCTCTTCTCCCTCCCCGAGGAAGAC-ACTGAGCCAGATCCCTGGGAACCAAACACAGCTCAGAATCC--TGTCCTCCCTAAGGCAGATGGAGGAAG---------------CAAAGTCATGCT-CTCAATCCCCGTACAGCACTCTGCTTGCAGGGTCTCACATGTCTTATTGGCTACTTGGGAACGACCTCTCCTGACCGCCTCCAACCAATAAACCAATAAACAGTGCATCTCCCACTGAACCACAAGACCAAGGCCATCACAGCTCATTTTTGGGCTC-ATTTTTATGAGATACTGTCATGGGTCCATCATCGGTACAGCAGGATGCTTTCACCTTAACGTTTATATTTACATGCCAACATAAAGAGTTT-CAAATTGTTGTTTCATTTGTTCATTCGCTAAACAAACACTGTTAGACAACAAAGAATGAACAAGACATTGTGCTAGGATGGGCTGAAGATACCAG---------TCACCCATACTAATGTCTCCCCCTTCTCTGACACATCACGGGACATCTACAGGTGACTAGTCCCACT---------GTGTGCAGCACAGACAACCATCTCACGCGGGCACTGCTGCCCTCACCTAGGCCAACTTCTG------TTGTGCATTTACCTTTCT-----------------------------------------------TTGCAATCATCAGA----------------------------------------------------------GAATGCTGGGGTCTCTTCTAGCAGAGGGTCTCTGAGGGGACCAGGCTGCGGCAGCAGTCCTTGACAGCTTGCTAAG---TCAGTAGGATTAACA-CAGTAGGTCAGTTGCCACCTGGCACAGGCCCAGAGCACAGCAGACCCCTAACCCCCTGTGATCTC-ACTTTCCCTGAAGGGTAGGGTGGCTGAAAT-AAATACTACA-GGTGACTCA----TTGTG----GTTCCACCCCAAAAAGCTCAGATATATAGAGGCCATTTCTTCCCTTTGGTAAGTTATCA---AATAGAATTTATGAACCTTCCAATTCATGGGGTGGGAAAGAAGCCTGTAAGATCGAGGCAATAAAACTCCATTCCCATAACTTTGCTCA-AACTTCTTTCAGCCAAATTTTT--GTAACCTAACAATGTTTTGTAGTTGTAAAAGTTATTTCCACAGTGGGCATT---TGGTACGGTG-GTTGGTGCTGTTCCACACTG----TAGCTAGACAGACACATTACAGAGCAGAAGGTTTAGGCT--GCGTGTATAAACACGGAGCCTGGGTGCACATGC-CTGTAAGTGAAAAGACCAAT-------------GACAAGGACTGA---GTCCTCACTTAT----------------------------------CTTGTCCTAAGTGTCCACGGAG---GTTCTGCTATGTGACGGCAGCATGCCCTGCATGGGTAGCACCAAGGCTCGGGTTTCTCAGATGACGATGGGCAGAAATGGCT----GAGGGCTGTGGCATGGAGTGTGGAAGCCTCACTAACAGCCATGTTTGTGCTGCGGCCACAACAG-GAAACAAGAGCAACCAATCCACATGTG--AAAGTACAG----GGTTGAGACTGaggtatgaggaggccaaaggactggatgacaggcactcaga---gatagcttgctgtgcttagaaaccctaagaagacaggtgacacagtg-----------acattgagaaagatgaggatagttctgggggacat----------tagagggtacattataggccaagcctttatttcctgtgatctggttgggag---------------gattaggttcggctagtttcagtcctc--aacacaggctgtgtgcatg-----tgcccctaggtgtctggcaccaagtcttgtcatcattaggacaagcggataACATCTGATAGAGAGAATGACTGGTACTCAGAGCAAAActgtaatcttagcactcagaggga-gcaagctgaga------gcatctggatttcaaggacacagtggctatataggcaggccctgtctcaagaaaacaaaaCAACCCCACACAACAAAAACGGTACCACAACAGGGAGAAGTAACAGCAAATGGATATAAATAGAAACAACAGACAAAGCGAAGGTCGCCGGGACCACTTGCACGTTCCCACAGTAGCTGCTGCTTGTTGTCTGTGGGAAGTGGTCAACTGCTGGAAAAGCAAGGCCTTCGATAGTAAAGCATCAAAATACATAAAATACAAAAGTACAGTGTGTACAGATGTGTGGGGCCAGGGCAGCCAGGAAGAAAAGAGCCTTCGGGTAGAGGGATGGTGCCCCTTGGTGCAGGAAGGCTGGGGAAGCAGCTGGCCAGACTTAAGTATGTTAAAAGAA------------------TGTGACCTCGATGACCAGGGAGTGC--------TGAAGCATCCAGAAGGGGGCAGAG---------------GCCAAGTCATGGAGCTTGCCTGCTTAAGTCTGT----ACTTCATTACTTCATGTTAAGA----CCAGTGGCAGAGGAAGGAAAGGA--------ACAGTGATTTTTGTTTACTTCCATTTGGTTAAAAAAAAAAAATCCATCCCCCTAACTCTGCGCTGTTTCAGAGT------------------CATCCTTGTAAGACAAACGGC-TGATGTGCTCAGAACTTTTGGGTATTGTGTGAAGGTTGGTTACTCTTTTATTCCTAGGGATTACAGACCCTTAGTGGTCTCTTTATAGTGCCAACCCAAC
s HiC_scaffold_1 139847246 2856 + 233722169 ACACCATGTTGGGGACCAAACCTGTGACAACATAACCTT------------------------AGCCAAAGCACCCATTTTCGTAACAGTCCTTTTAGTTAGGTgacattattttcttcctttg-acaCATAAAGAAACTGA----CACACAGGTGTAGTAGCTTTTCCAAGTTGCATAGTTTCTAAATGGTAG--------TGCTGGTATTGGGATCTCAGCACATCATAAACTTC-ACA-AAAGTCTTATAAATTATCATCGCCATTGCCATAAAAT--CTTACCTGGAAGCTCTTACCTGTGAATGCAAATTAGTGCAGCTCTGGT-ATGCACAGAAGTGGGAAGCCCAGTTTTCTTTGGATACCTCTGGAGTGACCACTGAAACAGCCCCTTGGGAGACAAACACCATGCATAAGCCACTGGCCTTTTTAAGGCCagcagagaaaagcaaagaacagaaaatgaagacaGGCTGATGGATCTCTATCTGGCATGTCATGTGTTGCGCTTCCTATGATGGACTAGATACTT--------CTTTGCCTG---TCATTCCACAAATAAACTCCT-------GCGTCTTTTA--GGACAAT--GACCAGGAGCATAACAGCGTGTGTCTAGGATCTGCTTTTATGAGATCCAAAGGTGGGTACAATACC---ACATTCAGAGGGTTTAGTATTACCGTTTATCCTAAAATAACATGTTAAACTGTTTGAAAATGGTTAATTCGTTTGTTgagtcattcaacaaatgttgaTGGAATGCAAAGTAGGAATCGGACATGGTTCTTGCACTGGCCTGAAATACCAAAGCAGAAGTTCAGCCCTACGTGCGTTCACCCCCTCT-------GTCTTGG----TCT---TGTCCCTTGTACCACCCCCCATCCCATGTGCAGTCTGGACAGCTTCTTCCT--------TGCTGCACCTCCTTAAGCCAGCTACTGCCATCTTTCCCCATGTGTCTTTCTACACTCTGGAATCTTCTATCTTTTACCCAAGGCACCTGGTGTTTGATTTGCTCCCTTCAGAATCCCCCTCCCCATGGCTGACTCCTCATATGAATGGTTGTCCCCTTTCAAGTCCGGCAGGAAGCTGGGCTCTTGTTTCACAGGGCCTCTCTGAAGG-ACAGTGCTGCCATGGC--TCCTCC----CTTGCTGGAGTCTCATGAGGCCTGGCCTCAGTGACTCAGGTCACACCTGGCCCAGACCCCGAGCACG-----CCTGCAGTGACGTATGATTTCCATTCTTCCCGAAGAATGTGGTAGCTGGCATGAAATACTGTGTGATGGTTCACAATTTATGCATTGTTATACATCAAGGA-CTTAAATATATGGaggtcattttttccttttg-taagttATCATCAAATAGAATTTATGAACCCTCAGATTCATGGGGTGGGAT-GAATAGTATAAAATTGAGGCAATAAAGCTCCATTCC-ACACTTGCGCTCAGAACTTCTTGCACACACATTTTTTTGTAACCTAATCATATCTTCTGGTTGGAAAACTTATCTTCAGTTTGGGCATTCGCTGATGCGCTGTGCTTGTGTTGCTTCATGCTTACGTTAACTAGTTGTGTAGACTGATGA--AGAGAGCTTTGGCTTTGCACGGGTGATCTGGGGGGCTGGATTTACATGTGCTGTGGGTGGAAGGGCCAATTAAGGAGCGATGAGATTCGCACTGAAGTGTTTTCACATGTGGCAACTTCTGGatcaattaattaattgattgtCTTTCTCTCAAGCATTCAGTGAGAGGGCACACTCAGGAAATGGT--CAGGCCAGGAGCTGATCACACAAAGGTGAGAGTCCCTGAGG---CTGTCAGCAGAGATGGTTCCAGGAAGGGCGCTGTGAGGAGTGT---AGCCTGGT-----GGGGTGTTCATGGGTTGGTGGGGACAAAGAACCAGGAGCAATCAACTCACAGGTTTTACAGTGtagcttttgttattatttaggTACAATGAGACTAA--GAATGCTTGAGATGATGTTTGACATGATGCTTTGTTATGCTCTGAAATCTCCAAAGCAGGGGCG-TGCTGTGCTCTGGGGGCCACCTGGGAAAGGAGCAGGGCTGGTCAGGAGGTGGCAGAGTGTGTGTGGAAGGGACACTATGAGTCAGA--------GCCTGTGCTATGGTTGGGAGAGGCAGGGTAAGTGGGTTTAGGACAGGATAGTTTGAGTAATTGTAGTGCGTTCTG-GAGCATGAGGGCTGTCCCTGGTTGTTTGG---------------------------------------------------TGGCTGGGACTGGG----------TAATTATGGTA----GATGGACGCAAGCTAATACAGGAGGTATCTGGG------------AGTGGATG--------GGCTCTGGTTT-----------------------------------------------------------------------------------------GTTGAGTTGGCTG--ACCAAATGTGTGCTTCCTCTGGAGTTGTTG---GCCGTCTCTAGGAATTACCTAACCCTCAGCACTGCAAAGCTCAAGATgtcaaagtataaaaatatgcaaaaca-aaaagtttagCAAATACAACCAAGTGAGGCTCGGGCAACCAGAAAGA---GGGACCTAAACCAGATGGTAAAAGGCC-----TGCAGGGCAGGTGGTTCAACTTGTGCAAATGTTTAGGTATGTGAAAAAAAAAGGATGTGTTAAATATGTGTGGGCTCTGTGGTAAG--AATGCAATATGAATAAAGAGACCAAATAGGAAGTGAGTGTCCTGGAGGCTTGGCCAGTTTATGAAGTTTACCAGCTTGAGGATGTTACAGTTTATTTGCAAGACAGTAGGGATAgccaaaggagaaggaggaggaggaggatggtgaCAATGATTTTAGTTTACTTCTGTTTTGT--------GAAAATCTATGCTACTAAATCTATGCTACTTAAAAATTAATGAGGTTTCACATTTCATCTTTGTAAGATAAACAACGTGATGTGTTTAGTACTTTCAGTGGTTGTGTAAAGAATGTTTACTTTGCCTTTCCTGGGGATTATAAATCCTTGGTGTTCTCTTTCCAGCACCTATGCAGC

a score=12860
s chr3           153009059 2123 + 160039680 CCCTCTGCCTCCAGGACCCCCGAAGAGAGCTCCCCACTAGGCAACACTACCCTTCAGCAGTACACGCATATCAAGATGCCTCAGATAAGTGC--GCGATACTATTTTCCTTTCTTCTCTACAAAT-----ACAGTTGACAGAGGTCAGCAGTGGGTGGGTTCTTGTGTCTAGTGGCATTTTCTTCTGTATGGCATAGTGGGATAAATACTGGCAGCCATTGCCCTTGGCCATGAGAAGTCATTGAGGTATATCAAGTAGGGGAGGAACAAGAGGAGAGTCTTTTTTCAGGGATATTCTGGCTTC--TATTCGGAGGAGACAAG--AAAGAGAAAGG----GCCCGGAAGA---GTGG--AGGGAGGCCCACCTTAGAGCACAAAGCC------------GAGGCACCTCT---CGGCTAAGGCAGCCTGTGCCAGAGG--CAGTGTGGAAGAGGCAGGCGGCAGCTTC---TAGAGGGCCACGCTGCTGCACGCACTG--------------------------TTCCCAGAGGCTGCGTCCTGCTAATGCGGACGATGCTGAAGATGCATCTCCCAACTTAGTTTTCATTTAGACGAGTGTGTTTCCACTTAGGAAGTGTAGATACTGGAGACTCGGTGGTGCTTTTTGTTTATTTATTTGTTCATTTATTGTTTTTATTGTGGTTTGTTTCTTTTCTTTTAACTTGGATTTAAAT--CACTGGAGATCTAAAACAATTGAGTAACTCACTTTTAAATTTTTACAAATATTGACTAAAAAAGCATCCTGGTGCCTC-TTGAATGCATCCTTTGTATCAAGCAAGAATGAATATA---------TATATATATACTACCT----------CCCATCTCTGTCTTCTCTCTCTGTCTTctctccctccccctcccctccccctccctctccctactcccccCTCTCTCTTCTGGACCTGCCTGTGTCTAAGGGAGGCAGACTTCCAAGACACCTTCACCCTGTTTTCCTGGCTCTTCCCCCAAGCAGGCTTATGGAGCCTTAGAAGAGATTAT-------CTCTCTATAACAGGAACACTACGGGGGACACTATGGTGTTTCCTCTTCTCAGCACAATTAGGGACTCTGAC----CTAACCCTGCTAAGTGGGTCATACCAACT----------------------------AGA----CATACC-----AGAGATTTCACTGATCTTGACCTCGTCCTGGGCCTTTAGGAGGCATGCCTGAGGGCTGTCAT-ATCACTGCACAGAGAAAGAGAACCAAGTACCT-----GGTACCAAATA---------------------------------------CCTTGTTCTTGGATTCATCTCAAGGATGCACAGCAGTGTCCTGGTCTA----ATTCCAGTCTGGGGACGAGATATCTGACTGTCACCC--TGTTTTCACTCCTCTCCTTTTGGTGTTCAGAAGTCCGTCCTTCAATCCTTC--CATCTTAGCATGACACATGGCTACAGGCAA-CCTGTGAAAGCCAGCATCCCCAGGTGCCTGGCAGCCAGCTGTGGCCAGG-CTCTTTAAAGGAACACAGGCAAAGGCAA---AGTGTGC----AGTGTCTTT----------AGATGTTCTTG--TCGTCGGTG------TTCTGCCTTCCCACGGGCTGCCAATGCTTCTGAGATAACTGGCTCTATGGCCAGGCCCACTCCGTTAGAAATAACGAGCCCTTGTAGCCCAGGAGGGAGAGGTTGACAGTGGCCAGGGAATTCTAGAGCATGATATGATTCTGCAGTAGGGTTAACTTAGAGCACATCTGAGCATCACCAGGCTTCTAGAGCATCAGTGTTTTCAAAAGCTGAGAGGCAATGATATCCTCTTTACAAGTTTCGCTCACCCTAGCTTTACTGGCCCTTCACTTCAGAGGGTTAGCAATGTCC-----ACTCAACGTGGGCTGTCCAAACACACAGGCAGACAAGAGAGTGGC---------------ATTGTTTAAAACATGCTTTGGTGGAAAGAGCTCTTTATCTGCA-CTAATGTTTAAAGTTCTCCTTTAGAAACCCACCACTGCCCCACACCCCCTCTCAAGGCTTCATGGGAATTTTTCTGCCGCTGGGAT------------------TCCAAGACCAGGAAGAGTCTGTACTTTCACTCTCAGTCACCTGCAGACTAACAAATGAGCCCAGCAGCCACttcacaga-------------caggaggcttcctgct---------------------------agc--atgagctctgtgttcttgtcagcttgtgagtccttcagaggaggtgggaaggcaggcagagagatgcagtgcacacaatgggctgtgcatcacagatgaggaaa
s HiC_scaffold_1 139857501 2085 + 233722169 CCCCTTGACTCC----CTCCCTATGA---CCCCATCCTAGAATCTGCTTCCTTTCAAacctacaaataaataaagattcC-CTGACAAATATCTGTGATGCTGTTTGCACTTCTTTTCCATAACTTGTGGGAAGTGGACTTAAGTCAACACTGGGTGAGTTTGTGCATCTAAATTACGTTCCTTTTGTGCATCTCAGTGGGGAAAGCAGTGACAGCTACTATTTTTGACTGTGAGAAGACACT----------------AGAAAGACTCAGAGGAAGG----------ATGATGCTGTGTGATCAGCATGTGGAAGAATCAAGGCAAAGAGAAATGTACAGCCAAGAATACAGATGGCAAGGAAGGCAC-----AGAGGGCAGAGTCCCTTCAGAATTGACAGCACCTGCAAACCACCAAAGTGGCATGGGTTAAGAGCACACTGAGCAATTGGCAGATTTCAGATTCCGATAGTGGG---------TGCACTCCCTGGGGAAGGGGACACCCTAGGGATGTCTTTTCTCCAGGCTGGGAATTGCTGATGGAGAAGATACT-------TGCTTTCTAGCTTGGTTTTCCTGTAGTGGAGTGTGTTGCTA-TTGTTAAGTG----GACGGAGGATTC-------------------------------------------------TTTGGTCTCTTTTTTCAAACTTGGCTTTGAATTCCTCCTGAGAGCCAAACTAATTTTGCAAGTCATTTCAAAATTCTTTCACATGCAGAGTAAAATGTTA-CTTGGCATCTCGTTAACTTCCTCCTTTGCACCAAGCAAGAA--AATATGTTGTTGAATTATTTAGGTAGTTCACGGAGAGAGAAAACAGGTCAGTCTTAAGTGGACATCACTGATCTGT--------------------------------------TTTATTTGGGAACAACCTGAGTCTAGGAAA---AGATTTTTCCCTCATCTT--CCCTTTTTCATTG--TCCTCCCCCATGCAGGCTCACATGGACTGGAAGGGGATATTAGTCCTGCCCTCCCTGACACCTCCCCCACTGGTG----------GCTTTTTAGTCTAAGGAAATGCTGTGAGACAGACATCTCTGACCCTCTAAAATGAATGATATTGACTGCTCTTTGCTGAATTCATTTGGTTGGTGAGATTTTCATGTCTACATGGGCATCTACCAGCTCTGACCCTCTCCCTGGGCCTACCATGGACACTTCTGGGTTCTGTCACAATCAGTGCATCTAGAAGGAGAAAGAGGTATCTACTGAGGACCTACATAGTGGCTGGACTTCATAGGAATGGACTCAACCAGACCAGTTTTAGTCCTTGGATTTAGTGCAAGGATGCACAGTAGGG---TGGGTTATTGTGTTTTAGCTCATGAAAGAGATAGCTAACTTGCTCCCAGTGTTCTCGTTCCCCTCCTCTCTGCATTTATAGAGCCCTAGTTCAGCTCTGCCACATCTTA-TGGGGCACATAGATACAAGCAACCCTGCTAAA--------------------GACAGCTAAGTACGTCCAAGTCCCCCCAGAGGGGTCTAAGTAGAAGGGAATTAGTTTCCTGTTAGTTTCCTTTGTGCTTGAGAAATGTGCTTGCTTTTTCTGTgctcattttctgctttttcacaGGCTGGAAGTG--------------GGCACCATG-------CTGCT------GAAATA---------TGT-----------------TTGAC-------------------GGCATG------------AGCAGGGTTG--TTCCCTCACATCTGAA-ATTGCTAGGCTTCTGGGGT-TTTTTACTGTAACACATGGAGAAGTACCAGTAGTC-ATCTAAGGGCTCTGTTCACCCCTGTTTTCCCAGTCCTTTAGTTCAGTGGTTGAGCAAGCTTCCAAGGACTCAGCCAGGGCTGTCCTAACACAGAGCTGGACAACATGGGGACACCATGCAGGAACTTATTgcttaaaa-------------aaatacttatttatgTCCACCTGCTGTTTGAAATTCTTCATTTCAGATTCA---------------TTCCCTCAA---TTTAGGGGACTGTTTCTTATTCCAGAGTGAAAATATATCTTGGTTGTCCAGAACTGTGAAGATCCTGAAATGTTAC------TCACTTGCAAGCTGACAGATTAG-CTAGTTACAACTTCATAGAGGACAGCAGGAATCACGAGACTCCTGGCTCAGAGACAAGGGACTTTACAATCGTTAAGCCAAGTAGCGCTGGCTTCCTG--GGCTCCTCAGTCCCACCAAGAAGATATGGAAGAGGCCTAGGTGAT---------------GGTTTTGCATCAAAGATGAGGaaa

a score=40018
s chr3           153014018 4055 + 160039680 [encoded data, 4516 characters]
s HiC_scaffold_1 139864572 3801 + 233722169 [encoded data, 4516 characters]

a score=9985
s chr3           153018214 490 + 160039680 ATTCTTGATTACTTTCCAGAGAGTTTTGGGATGGTAGCCAAGC-ACTTACAGGAGATCTGAAGCTGCGAAGTGCTGGTACC---CACTTCCTGTCATGGAGAGAGGAGGCAGAGGGGAGGGGTCAGTGAGGGAACGAACAGGCTTTCCTAAAGTCCTGCAGAGTTCTTGTTGGTTTCTGTGATCCGGTGCATTTCC--------GTTCAGGGAGACAGCCAC-CATCCTTATTAGGAATC-TCCTCTTGCTTTAATTACTCCAATTAGGCTCCCTCTGCCCACATCCAATGAATTCATTATCTGTATATTAATTTGTGGTGACTGATGAAA-GAGAGGG-CGCCCCCATTAAGATATTAGCTGAGCTTGGCTTTGGATGGCTGGCTGCTGAGGTTGgttttttgttgttgttgttttttgttttttta--tttttgtttttAGCAAAACTTTTCCAAGGGGGCATACATTGTTCTTATGATAAGAAGACCAAT----GAAAGTGTTTACTTA
s HiC_scaffold_1 139869227 468 + 233722169 ATCTTTGATTATACCTCATACAGTCTCCACCTGGCTGTTACGCTGAATAGAGGGGATTTAACATCATAAGACGTTGGTACTAGATATTTTCTGTCTCAAGATGAAAGAACAGAGGTAAAGGAT--GCAGGGGCA-------GCTCTTCCCAGTACCCGCTGTGCCTTAGCCTGTTTCTGAGGCCTGATGCATCGTCACTGATGAGTTCAGGGA--CATCCAAGCATCCTCATTATAAATCCTCTTTTTGTTCCAGTTACTGCAATATAGCTTCCTTTGCCCACCTCCAGTGAATTCATCATCTAGGtattaattcat--tccatgatgaAAGGAGAGGGACATTTACATTGA-ATGCAATCAGCATTTACTTTTAGATAGCAGACTG------------------------------TggtctatttaattttttgtttttagcaaaaCATTTCTAGAGAAGCATGTATTGCTCTTGTGATAGCAAAAATAATtagcaaaattatttattta

a score=41497
s chr3           153019540 3369 + 160039680 TAAAATGAAAATGGAGCAATTTACTCTTTAAATAAGCATAGAAGTAATCACATTTTAATTTGCCTTCTGGGGGAGGATTGTGCAGGCTTTTA-CTGACGTATAAGTCATATTCTATTTAGAGAAATGTTTTATTAAGGGAAAGATATTTGCCTTCAACTTAGAATTCAAACAAAATGAGACATAGGAAG------AATGCACAGTGTCACTGGTGACCCCAT--------GGTACCTTACGGTTCTCTAAAGCCTGCAGTGTTAACAGGATGAACTTTTGGCAAAGTCTGACTGAAGGTGGTCCCTTGACGTGGATGAAGAAGAGGCAGCTTGTGAGGCTCTGGAGCTCACCACTGATCGGAGGCCTAACGG---AGACCCACAGCAGATGAAGAAC----ACGGAAGCGCGGGACCGA----CAGGCTATCCAGCCCAGATG--AAGAGACTTGGATGCACTCAAAGCTCATATTCTAACTTCAGATTCGAAGGGAGTGTGAGAACTTTCTTCTAAATCCAGTGTCTTCCCAGCAAAAGATGCAAGCACTCAACACATTAATAATTTGGCAGAGATGGCCACTGGACTC-AGATGTGCACAGGGCAAGCTGTCTGACTCTTCCTGAAGGACCTGTGGCTCTGTGCACAGCACAGGTAGGCTCGGCTGTGTGAGTCTCCTGCTCTCATTTAATG---TCACCTTCTAGATGGGACAAGGATGGTTGACATTTCCTCACGCGTTTTCACTGGCAAGAGCAGAGCAGAAGTCATCAGTGGCGTTATCTGTCCGAAGTCAGTACAGTGAGG--GAGCGAGTGATGGTGGCTTTTGGC-CCTGCACTTTGTGTGAGAAAGGATGGAAGTTATCTATAGTGTGTGTGGGGACTGATTAGAACAAAAGACAGGAATGAGGCA-----------------GTCTTC-------------AGTAGCTCAGTGCTT--TCTTCAGCCTGCCAGGGCCT-TAGCCAGCCCCAAACTGTGGCACCCAGGGTTTCTGAAATCTGAATGCCAATGTTGCTGCTTTCTGATCCCAGCCAAACATCCCTTGCACCATGCAGTAATTCACTTCTCGGGATTCCCCACCAGGGTGGTTCAGGCTTGGGGTGGATTCAGGTGACCAGGTTTGAAGCCTCACTCTGAACCTCGAGACTGTGAAAAGTGATCTAATCTCATAGCATTGTGTTTTGCATCTTTGTAA-AGAAGCTAATTATG-----CTCTGAGGTCGTTGTGGAGATCAAGGATGCTGACCTCATGCATACAGATGCAGGCAATTCCCGTTCTTAACTACACGGCATCCAGAAGCTCAATCT-ATCTCCAACCTCGCCTGCCTTGAATAGCCTCCCTCCAGTTTCTTCTTGTCTCTCACTATCTCCAACCTCGCCTGCCTCTAATAGCCTCCCTCCAGTTTCTTCTTGTCTCTCACTAATACCGTTTGCTCACTGTGCTCCGACTCACGTTGC-TCGGAACTAGTTCGACATTCGCGCCCTGAAGCTTTCCCAGAATGTTC----AGGAGTCCCTTTCCCCTTC-----------------TTTGGTGTCAGGGTCTGGGGACTTCAGTGAA-------------------GAATCGCCTCTGAGAAT---------GAACTGTTGCAGCTCAGGGGCTGATGTCTCTCGTCTCGCCCAGTCACCGTGAG---GAC--TGAGAGAACCTCACA-----AGGCCTGGGCATAGCTAGGTGAGGGAGGCCCAGGAGCCGGCTGGTTCTAACGGTGCCA--------GGAAGAACACTAGCTGGCAATAGCC-------ATGCAGATTTTATTCCTAAAGGTCAAAGG---TGGGCACAGAGCAGAGCATGCGGTAGGGATTTACTGTT-CTACTTAAGAACCATCTGGAATTCTCAGGTGAGAAGGTCTCTGGAGCTGCACCTTAGATCAAAGGGAAAGAATGCTTTGTCTAAATAGCGACATCAGAT-------CAGCATGTGCAATGAAGATGGTAGCAGCTGGTTA-GATCCTTCTTCTAGCTCATTTCTtctctccttccctccatctctccatccttccttcccttcacctctctcccctgccttccctctctcttcctatccttctctcccttcttccctccacagctctccctcaccctaactttctatctcttcctttctccttccttccctctctccctccACAtctcttcctctctcttcttcttctcttttatcctctcctccccccgcccctTGAAAACTGCTTAGGTAGATCAAAAGATTCTTCGGTTCATTTATCACATCGATTTCTATTCTTAGATGTGAAAAAAAAAACCACGAAAGGATTACAGAAAGTTAGAGAACAAAACAACAG-AAACCATACTGAATCCATACTGAATCCTTCCAGGGTAGTAAGTAGAAAAATATAAGCCAAGAT--GTCACTACCAACTTAGACTTAATTAGCTCATTAAAACTGAAGTTAAAACACCAAGACTAAAGTAGCAGAGTAGAATGTGTAGG-----TGACACTTGTGGTCAGCAGGACCAACCTGGACCACAGCAGGGAAAGCCCAGGGAGAAGCTTGCTTCCTGCGG--CGGGTGCTGCCCACTGTGGGTCATCTTAGCAGAATGTTCCCAGGGCTGGCAACTCCCCCCCCCCCCCCCCGAGAAGCAGTGAGGTCTCTCTGAATCCTCAATTA-ATGCTTGTATACATTCTGGTTACACATTAATTTTGGAT-AATGTGACAAAGATTACTAATGGGTCATTAGTATCTGCAAATGGACATGGGGCCTAGTAACTGTATG---TCACAGGGTTTGTGGAGATTCAACATGACA-TGAATGTGACCCTGATGATGTTGTTGGCTGCCACAACACAAAACAGACATGT--GTTATT--TTTTTATTAATTCA------------------------------------------------------------------------------------------------------------------CGTAACTTTATGGATTCTAGTGGGATGCTACTGAGCCTTTAACCTCCTCTCTGTCTTCCTCTCATACTCCAGATACACCA-ATGGCTGTGTTTCCTTTATGGTTCTCACCCAGGCTTTG------------GCTTAGA-AAGAATAGCACCCTTCAGTCTTTCCTGTGTTTACTATATTTGTAAATGGCTGTGATGAGCCACATACCATGCATTGTCCATCTGAGGAGAAGGGACAGCAGAGACTCATG---CTATGGTGCAAAGCTCCAAGTAACTGAGAGCTATTTTGGGGTGTGGATGGCCG-CTGGCTTTCCTGGTTCAGCTCTATGATCTGG-CTGGAAACACCTTTCTAAATGAATTCCCATTGTGGTCTGGTATCCTGCA-TATATAC-ATCAGATCAC--TGTTTCTCACACGATCCATGTGCTTCCCTAAGGCTGTTGTGTCCATTCTGTTTCTTCTATTTGGAAGGA-ACTCATTTGTGGTTTTAGAA---ATAGGTTAGTCGTAGCCTCCCCCATGAACTCTCATTAGGACCCA----CCTGACAGCAAGCTCCTACTTCCTTCCATACATACAGCAAGCTATCTTCTTGATAAGTAATAGA----TGGATTATTAAGTCAGTT
s HiC_scaffold_1 139869711 3304 + 233722169 TGAAGAGAAAATAGAGC---TCACTCTCTAAATAAGTACACAAGCAactatattttaatttgctttcttgGGGGAACAAATGAAGGCTTTTAATTAATGTGTAAGTTCTACTTCATTTAGAGAAATATTTTGTGAAGAGAATGACATTTgctctcaa-------ttaaaaaaaattaagacacagTGAGCTCCCAGACAAACAGATTCCC----AATCCTGTCCTTTATGGGCTTCTTACATCTCTGGAATGTGTGCGACATTAGCTAAAAGAGATGTCAATGG-GTTTGGTTTATGTTGCTACTCTAAGGAG-----AGACAAGGAAGCATATAAGAGCTGGGAACTTGCCAGTGGTGAGTGGATTAGTAGGAGAGAGCAGCAGTCAGCGAAGCACGAAAATAAGAGTGCAGGCTCTAAACTCAGGTT--CCTTCCAACATGCCAGGAAAACCAGAGCCACTGAAACC-----------CTTTAGTGTCCAGA-----------------TTCTGAATTCAGACTTTACCTAAGAGAAGAGATAAACACCCAAGACATTAATAGTTTTGCAAACTTGGCCATTTGATGCGAGGAGCTCATAGGCTGAAATA----ATTCATCCTGGAGATTGTGTGGTTTTATGCGTAGCACAGATGGATGCACCTGTGTGAATTTC-TGTTCTTATTTAATGCTGTTGTCTTTAGGATGAGAAATGGTGGGTTGACATTTTCTGATGCATTTTC-CTGGCAAGACTTGAGCAGAAATAATCACTAGCGTTATTTGTCTGATGACAACACAATGGGGTAAAATGAATGATGACAGCCCTTGGCACCTACACTTTG-GTGAGAAAGGATAAGAATTTGCTCtaacagaagaaatatttaattaaaatgaaagccAATGTTCAAGTGTGtggattgttctttttttcttcgtCTAACCATAAAGATTATTTAGATCTTGCTCTGCAGTCTGTCACAGACTGTAGCCAGTCTCAAGCCACAGGACCCAGTG-------ATTATAAATGTTAATATCATTGCTTTCTAAGCTCAGTCAAAAATCATTTAGGAACGGCACCAGTTCGTTGCTCA-----------CAGTG-GAAGCAGGCTT----TGAATTCAAGTGGCCCAAATTAAATGCTGGTTTCTAATGAGGAGACTTTGAAGGAAAACATAGTctcactgaattttatttttcttctttgtaatagGTGCTAATAATAATCACTTCCCAGATAGTTGTGGAAATAAAATGTGATGATGTAATGCACCCCAGTtaagaatatttttgcttttgtattc----ttTCTTGAGGCTTAATTTCACCTCTAATGCTATCAgccttg--------------agacatttctagtaCATTAGCATCTT--ACCT-----------------------------------------TTACAAATATTCTTTATTGATTGCATCTGCATTCATATTTCTTCAGGACTTTTAAAACATAGTGTATCTAAAGTCTTTCTGCATTGTTCTGCTAGGAATTCCTTCTTTTGCCCAACTGCCAGTGTGCCTTTAGCTGATAGAGTCTGAGGACTACAGTGGAGTAAATAGTTTCAGAATGTGATTGACCTCTAAGAATTACACTGTGAAACTACCACAAATTGAAGGTTGGTTGTACTTGCCTCATGTGCTTATTGTGAGATAGATCATGCAGGAAGCTGTCAGCCTGATCCCCAAACATGGCTCTATATTAGTGGT---GATGTTGGTTATGTTAGACAGTGCCAAAGTTACTGGGAAAAcaataatttctaaaaaataaatatgatgcaAAAATTTCCAATCAATGTTTCAAGTAATAGCTATAGGATAGAGATTACAAATAGGATTTAAAATGATTGCTCATGTACTACCTGGAATGCTAGGTAAGGAAGGTTTCTGAGACCGT-------------GGGAAGGAAATCCACCACTGATCAGAGATGGCAGATGTGGAAGGAGAAAGTGGAATG-----GACAGTAATTATTTACTAACCGTCTTCTAGAGAA------------------------------------CCCTCTTTACCTCTCTTCC---------------------------------------CCCTCcac------------------------------------------cctttcctcccttcctc--------------------cttctttcctttcattctttca-------------tgAGTCCTACACCTGTATATCAGAAGATTATTCAGTTCACCTA----------ATGTGTTCTTA-CTGTCCAGGATAAAAATATTCTAGACTGACCAAAAATTGGAGAAGAATGAAATAATGAAACTTAC--------CATTAAGT--TTTCAGTGCTATTATTGAAACGTTATAGGCCCAAACCAGTCATTGCCAATTTTGGA--ATTTAACccataaaaattaaagtaaaaacaatgagACTAAAGGAACCAGActggaaaagcaggaaaaatgcCTCTTGCAAAC--CCTGGTCAATCAGGGCAATACTAAGGGTTCCCTCACAACAACTTCTTCTTATGAGGTATGAGTTTTAGCTACTGTA----ATCCACACAGAATGTTTCAG-------------------------CCTGAGATTAGGCCAGGTTTAGTTGCATGCAAATTTAGAAGCTTATGTAAACTC----TACACATTAATTTTAATTGAATGTGAGAAAGATTATTAATGACTCAACAGTACCTGTGAATGGACATTAGCCAtaataattttgtgcatttatAGAGCTTGTGGAGGAACAATAAGATGTTAAATGTGACAC---TAAGGTTATTGACTGGC---ACACAGCTCAAGCATGTAAATTGTTAGTCATCATTAATTCACACAATTTTAGGATTTCTGgctgctgtctttttttcttttgtggtactgaggatcaaactcacaaactcacacttccaaggcagatacttatgccactgagctaaatccctggccacaaTTTTAGGGCTTCTAGTGAAGTACTACAAACTCCTTACATTCGTCTCTATCTTCTTATGATACT-CAACTACATCATTTGAATGTATTTCC-TTATGGTTTTCATCTAGATTTTAATAAAACATATCGCCTGGAGAAGACTAG--CTTTTCATTCCTTTATATGTTTAGTATTTTTATGAATGCCTGTAATGAGCC----ATCATTTAATGTTCCATTGGGGAAGAGAATCACTA-----CCATGACACCACGATCCATAGCCCTAAGGCACTAGGAGCCACTCTGAGGTATGCATGACTGCCTGACTTAGTCTGATAACTTCTGTGATCTGGCCCTGAACTatctttccaaatgaatttcc----tAAAATGGCACATTGCACTATATACAATCAAGCCACCGTGTTTCCTCAGCAATCTTTGTGCTTTCCCTCTG-TGttgtatacattttatttcctctacTTAGAAATATTCCTATCTGCACTTTTAGGAAACACAGGTTAACTATAACTTCACTTTTGAAATCTTGCTGTGTTACAATAGTCTGAAAGCAAAGTTCC-CTTCCTTGCATAGTTATACCAGTCTGTATT-TGGTCAAGGGATGGATATTTGAATGATTAAATAAGTT

a score=34820
s chr3           153023763 1997 + 160039680 tccagttttgttattctgctgcacgacttcaagcaagtgactcaattttctaactgtaaattggaaataaaaataagttcctaagccatagggtCCCGAGGG------------AATCGATAGGAAGCTCTTGGCA-----ATTATTGGGTACCTGGAAGGAAATCACTCAGTGTTAGCTCTTAACCTTGC-ATGTTCTGAACCTTGA-------ATTCTTCATAGAGTTGTGAGAGTTTTGAATC-------------TAGCTCTTTGGGTCTACCCTT---GGCAGATAAACATTATAATTTTATGCAAATGTAAG-----------CCTGGAGACAATTTGGAGTATGCAGAAACGCAGCTCGTGG-----CAATTAGCCGGTTCAGACTGACGAATCACCTGCTTTGCAGCTGGGCCCTCTCT---AGTCCTACACTGCTGTTTTTCAGGTGTACATTTTTCACACTTGATGGTCATCTCCTCGAATTTCCTGGCAATAGTTGAGACCAATTAAAATGCAATTAATAAGTGATAACGCCAACATCAAGCGGTGCT-GCTTGTGGAAGAGGCATTTGGAGAC-AGCAGCTCAGCAGGCCTGTCATGTTGGCAGAGCGCGCCGGAGACTGACTTCAATG-TCTTTGAAAACTACTGAAATGCTTTCCTCCGAGTGTCACCAATAGAACACAAGGTGCACCACTGCATTGCACATTGACATGGTGCTGTTTGCATCAAATTTCCCTACCTGGGGACAAACCACACACATACATACAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGTAGCAACAGATGTCATTCACTACAATGGGAAACTTGGATTCTGTCCTTTGGAGAAACAAGTA-AGACAAGAGGATGCCATGCCATGTTCTCATGCAACACCACAGAGGGCGTGAAGCAGCAC---AGATCATTCAAGGGTGCTGTGAAATCACTTTACACCAGGTTGTTAAGCCGCATCCCCTGT-GTGCTTT-CAGTT---AAGAAGAC---AAGACTAGACAGTGGTCAGGTGAACTCTTTACAAAGT--------ACGATGTTTGAACTAGGGTTAAATCATGACATGAAGAATGGTCACAGGGATGGAACCTAGATAAAGAAACATTTGTGA------TTTAGCTACAGTGTTTGCATACTCTTGGGGTTTGGGGGGAATTTGGGGGGTTTTCTTGATTTGGGCCTCG---TACTCAGTGCTCCTTTCGAATCTCAGCATTACCCTGGTACAGTAAGTGAATTGTATGGCTGGTGGAGTTACACTGAAACGCTCAATTCTACTTTTATATATCAG----------------TTAAAACCTGCTCCT---------GGTTT---GTAAACTTATGGGCCCTTAACAGAGGTTAGAGGGAAAGGGAATTGTATCCCGAGAGCTCAGGTCCATTCATGTCTGTTCATCTGGAGATTCAGACAATGGAGGTAGCCCCCCTA--------------------------------------------GGTCTTTGTGA--ATTGTTAATCTGTTCACCTG--------CGTTCTTCCTATGGCATAGATTCTACTCCCCCTTCAAAAAGGAAGACACGAAATGGACTTTGTGGTTACCTTTAAGACAGAGTT--TGTACAGGGGATGTGCTATGTGTCTATATAATTAGGGCGTGGCTGGAATGTGTCTGCTGGAGACAACCTC------------AAGC----TTCACCTACACAATCACTTCCTTAGAGTCTTGCATGTCAGCCCGTGAAAGGCCAGCTGCAGTTGGGA-AGGAAACTTGAGC--TGTCTTTCTTAGGCAGTACATACCTGATGTGAACTACAGAACAAGTCCAAGAATGGCAGCAGTGCTGTGTAGAGTAGTGCTGTGTAGAGTCAGCAGCCAGTTTCTCAAACTCAGTGCTATTGCTCCTTGCCTCATCTtatgaaggccaggttggtccaaagcttacaatccatgtcccttagcctcttgaattacaggcgtgtgTATCAACATTGAACTTGTTATTGTTTTGTTCAATGTGATTCGAAAGACTTTAGCCATTGTTATAAAGCAAGAAAAAA------------------------ATAAATAAAACTGAGTTTTCAGAGACGACATGAAATTCATGTGGATAAAAGTCCTCATAT
s HiC_scaffold_1 139873571 2001 + 233722169 TCTAGCTTTACCACTCT-----ATGACTTCAAGCCAGTTACTCAGTTT-CTACCTATGAAATGGAAATAACAATA-GTACCTACATCACAGG-TCCTGAGgattaaactaaaataataaatattaagctCCTGACATGATAACTACTGGGTACCTAGTAGGAATTTACTGTATATTA-------ATATTGCCATTTTCTCattagtgattttgttgttttccatATATCTGTAAAAGATCAGAGCCAGTGCTAGTTTTGTAGTTCTCTGGATTCATTCTTCTTGGCAgagaaatattataattttacacAAGTATAAAAGTGGAGGCCATCAGGAGACCATTTACAGTATCAGGAAATGTGGTTTGTGGACATTTTATTACCTTTTTCAGATAAGCCAGTTCTCCAATTGGCAGCT------TCTCTGTCACCCCTGCTCCCCTCTCTTTCAGTCTCACATCTATCACATTTGATGGTCACCTCCTCTTGTTAGCTGGCAGTAGTGGAGACCAATTAAAATGCAATTAATAAGTGATAACTCCAGTGCAGAAGGATGTTGGCTTGCAGCAGAGGCGTTGGGAGACGAGCAGCTCAGCAGGCCTGTCGTGTTGGCGGAACAAGCTGGAAACCCACTTAAATGTTCTTTGAAAACAACTGAAATGCTTTC--CCGAGTGTCACCGATGAAGCATGAAAAGTAGAACCAAAGAGCATATTGATGTGGGGCTGTTTGTAGCAAGCTTCCTCGCTCAGTGACAAAACCATcgcttatgt-------------------------tttattttatagtgtgcatgtatatttaaggaaCGTTTGCCCTCCATGGTAACAGGAATTCTGGGGAGTGTAAGCTGGGAAGAAAAGTGCAGATGAGAAGCTTAGA-GCCTCATCCTC-TGCAGCATTACA-AGGATGTGAAGCAGCATGTGAGGTCAGTCAGAGGTTCTGTGAAATCAGTTTGCATGAAGTACTTAAGGGATACCACATTTGGTGTTTTACAGTTCCCAAGTGGACTGGTAGGTTAGACAGTGATTAGGTGCATCCCTCATACAATAGAACTGAAAAATGTTAGAGTCGAGGATGAAACAGGACAGGAAGAAACATCTGGGAGAAGAGCCGGAGAAGCAATGGCGTTTATGGGAGTCTTTTAGTTGGCGTGCCTACATGCTCTGTTTTTCTCAGAGTGGTTCCAGGTTACACCTGTATTTAGGCTTCGGTCTATTCAGCAGCCCTGCCTACTCTCAGAAGTGTTCCAGTTTATGCCATAAACTATGTGGCTCCTGGAGTGAAGCTGAAATGCTCAACTTTACTCTCATCTGCCAGGAAAGAGCAGCATGAACCAAAACCTGCTCCTGCCTGCACCGGTTCTGAGTTATCTCATGGAGATTTAGAAGAAGGTA-----AGAGACTGTTGTGTTCT-----CCAAGACCCA----------CTGATTTGGTTACTTAGGCAATACAGATGACACGTCTAGGGCTTGCAAGATAACCAAATGTGTTTACACCAGATGCAAATTTGGTCTTTGGGAAGATCCATCATCTGTTTGGCTGGACCCTCCTGCTCGTTGTGTGACAGAGACGCTGCTCCTTCTTCAAGGTGGTTGTAGCAAGGTGAATCATATGGTTGACGCTAAGA-AAAGTTGCTGGTCAAAGA-------------CACCATAATT----------TTGATTGT-----CTGGTATCAATCTCTCTCTTTTCAGAAAGCAGTGCTCACCTGTATAATCATCCCCTTAAGTCCCTGCCTGTCTATCTAGGAGGCTCCATTGCCACCCAGGAGAGAAGAATTTAGCTGTGTCTTCCTTTGGGGGCATATAT--------ACTTAC--AATGAGTCAGAGAATGCTAACAAGGT------------TCCTGTGTAAGAAC--------GTCTTtgaaac------------------atttcaattttttaagtc--AGTTGTT---AATTTTAC----------------------------------------TCAACATTGTACCGG-----GTT-----------------AGAGGCTCCAGCCATTGGTGTaggacaagaaaaagaatttgaagttaTCATGAATGGATATAAACAAAACTGAGTATTCAGAGATGACATCAAAATTGCATAGGTAGAAGACCTAATAT

a score=38921
s chr3           153027788 1741 + 160039680 CTCTGTTTCCTCAGAGATTCAGCTAAATGCCCGTAGGCAGGAGAACCAATCAATAATCTACACGCTGGGCAGCAGAGAAGATGGCTGACATTGGGGAAATGCTTCCGTGGGGACGAGAATCAAAATGTATCAAGGTGCCTATAAAGCTAACCACAAAAGAACACCCAGGGT-CGACTCTGCTTCCA-TGGAGTTCACATGGGCAAAGCCAAGAGATGTGTATTTTAGGATGGCATGCATACAGAACAAAACTAATCATAAGACCTCTG-----TCATGAAGAGAGACAAGTAGAGTCAGGGAGAAAGATGTCAAGTC--TTGCCGAATTAGTAACTTCCTTT---CTTAAAAGGCTCAGTGTGTGCCCGTGAGTGTTCTGTCAGCTATTTTTGT-----------TCACTAGGCAGAC-CTTTCTGAATGTATGAAGTATCTCACAAAAAAATAAAAATGTTTAGAGGTTTCCAGCTGGCTGCGGACTGCCATGAACCGATCTGGGCAGTCCAATTATTTCCCTATTTACAGCAGGATTTATACTTTTAACTTCAGCTCATCCCTGATCAAATTTACTGAACACAGTCTAGTGATCAGATTAGTAACTCTCTGTGTATTCTCAGCCAATCCCAACCTCAGCATATGCATAATACAATCTTAATGACCCAGAACAACATATTTAGTCATCTAATATAGGCAGTTTCCCCATTAGCAGTCTCATTGGAAATACCCCAGTATGTAATTTCTATTAGTGGTTTTATTATGAA-TTCCAGCACGGCCTGCTTGGGGCTGGACCAGAAACTAGATTTGATGATCCTGACGAATCCTGCTTGGTTGCTGAGGCCTTTCTCGATGCCTGAAGGCAGAGTGCGTTATTGCTTCTTTCTGCTCATCCTTGTAGCATTTCCTCGTGTTTAGCACAAAACAGAAAGATCTGGCATTATGAGGAAGAAAATGGATAATGTATGGAGAGCTCCTGAGAACCACTCATGGACATCAAGGCATCCCATGCCTGTGT---CATCTGTGTCACGCGTTCTTGCTTTTGTTCATCTTATTGTCTCTTAGGGTC-----TAACATGTATCTCTTAGGGTGTGACATGTATCAGGTAATGGCTTATGCCTGCTTCCCTCCTATGTTTGTAAACTGGAAGAGGGTGGGAAGCCTATTTCATACATGCATGAATGCATGCATATTTTCCTGGTGTCTAA---TAACATTCCTAATAGGTATTAGATACATGATAAATAT---TTTGATTTAGCTGTAGTTGTTCCT---------TGGTTAGTTT------------------TTTATTCCTCTGACT-ATCCtggac-------------aaggctggcctgtaactcagagaagtcatcatcttgcctctgcctcttgagttccaacattaagggcatgttctagcgtgcccCTCACTGATATGTATGTATGTTTGATTTGGTTGAAGAGAATTACAGCTTTATGTTCTTTTAAATTTTAGGAATTTTTTCCCCCTTTAGATATGTTTAATGTTTAGA------AAGGTCTTTGGAAT-------------CATCTCTGGGGCAAGGAAATGAATACCTGGATTACTGGTAGTCATCACTGTATCTCATTGGATGATATTGAAGAC--------ATCCAAACACAAAATGGCAATTTAGCCTAACGATCTTAATTGGCTGAACTGTCAGTTCTAGAATCGGGCAATGTTG-ATTCCAGGAGACAGAATGAGTGTTTCAG-----TGAACTGAGCAGACAGGCAGAACAAAGAGTGGACTGCTCATTTCAAAGTTGCTTCCCATCTAAGGCAGACACGAGGAAAGA
s HiC_scaffold_1 139876344 1718 + 233722169 CTTTGTTTACTTAAGTATCCAGCTAAATGTCTGTCGAGGGGAGGCTCCAT-AATAAGTTGCATGCTCCACTGTAGTGAAGATGATCAAATACAGTTAAATGCTTCAGCATGGATAAGAACTGAAA-ATGTGAAGG--------AagcaaattacagaaaaatatgcaGAGTATGATTACACTTTAAGTcaatttcaaatatacaaaagtGATCACTTTATATTTCTGGGCTACATACATATGTAATAAAATGATTTCTATGACCCATAATTCTTGGTGGAAggagggaaataaaa-aatggagaagaatttcaatttctttatgaAATTAGTAATTTCCTATGATCTAAGCTGGCTC----TGGGCACATGAatgtttatttagttatttttatatctcCACTATTCACTATAGATATgctttttgaaaatatgaaatgctttatgagaaat--aaattttttaaaagtttccagCTTGCCCCAGACTGTCATCAACCGATTGAGAAAGTCcaattatttccttatttatagctgGATTTATACTTTTAACTCAGACTCATCCCTGAGCAAATTTACTGGGCATGGTCTAGTGATCAGATTAGTAGCTTTCTGGGCTGTTTTAGCCAATCCCGAC-TCAGCATATGCATAATACAATTTTAATGACCCTGAACAACATATTTAGTCATCTAATTCAGGCAGTTTCCCCATTAGCAATTTCACTGGAAATCCCCCAGTATGTAATTTCTAGCAGTGACTTTATTATGAAGTTGCATTGCTGCCTCCTGGAGACTGTACCAGAAACCAGATTTGATGATTCCAACAAAtgttactttttccacaaagaCTTTCACAGTGCCTGGAGGCAGcat---ttgcttctcctttctgttcaTCCCAGTGGCCTTCCCTCGTTCAGGATGTCAAGCTGATAGGT-TAGCGCGGGGAGGAACAAACACGCTAATACACTTACAGCTCACACTAAGCCCTCACAAATATTGGCCGTTcttctgtttgtgtttgtgtttgtattaT---TTCCCG-----ATTCATAAAATTGTCTTCT---GCCCCTATTAGAATGCACACCACA--GTGTGACA------AGGCTGT-GTGTACCACGATCTCCCTCTGCAGTTTACACAGCGTGTGAGGGAGGGCAATGTGGTACTTA---------------GTCTGCCTCCCTCGTCCCTAAAACTGCTGTGGCTAGTGTGTAGTAGGCATGGAATGTACATCTATTAAATTTAgttataatcatttttatgaatttatggtcctttttttgagacagggtctcactttgctctttgggctggtcttgaactcactttgtagctcaggctgatctccaCCTTGCAAacg--attctcctgcttcagtttcctgagtcctaggattacaggcatgcaccaccacacc----------------------------tgg------------------ctatactCTTTTGCAATGTAGG----------CTTTTCACATGCATCCAGGGTCCCGGGCCCTTGAGGCTCCTGGAATTTGTGTCCCAGCCCATCTCC------AGGAAACA-----CTGCAGGACTTGCACTTGTC-------CTCTTTGGCTGTGATGAAAGGCTTCCTGATATCCAATGACAAAACTGCAAGTTAGTTTCAATATCTTAATTGGCTTTCTTTGTAGTTTTCGAATCCGATGACCCTGTAGTCCATAAAGTAGAACACGGGTTTCAGTAGGATGAGGTGAGTAGAAA--CAGAGCAGAGAG-GGTTTGGTCATTTCAGCGTTGTTCTCTCTGTAAGGCAGGAGTGGGAAAAGA

a score=4401
s chr3           153035774 75 + 160039680 AAATTATTCAGAAGTCCCTTAGAGGTTCTGAGAGTGATAGAGAGCATGTTCTGTCAATACTTCAGAAAATACGGG
s HiC_scaffold_1 139884990 75 + 233722169 AAATTATTCAGGGTCCCCTTAGAGGTTCTGAAAGTGATAAAGAACGTGCTGGGGTAGGACTCCAGGAAATATGGG

a score=24169
s chr3           153036034 1004 + 160039680 CATTGTCTGAAAAGAA-----CAAGCAAGGACAAAGCTCCAGGGTCTCTGTCTAAATTCCACTGAACCCACCAAGTGTAGCAGGACAGGAAAAACAACCCAGAAGGCA-----GTGGAGACAGAAG--CTTCTATTTCACAGCCGTTCTCAGTAAAGACATTAACAATTGGGCAAAGTCCTCGACCACTTTACTCACAGAATAAGCATTAATGAAATAATTCAACCTGAACGAGGTGCTGTTTTATGGCTGGTAGATGT-GGCCCACCTGTATGAATTCACTGAGCTTATTTAATGCCCCTT-TAAGATGAAAGATGGTGTTGGTTTGACATTAATAGCA---TCTCTTGATGCTGAGGTAATGTCCCCGTGGATTGAATGGCATTGCTCTTTCTGTAGATGGAGATTGAGAAGTTTATTCTGAGAGCTTTGCACTGGGGATGGTGCC----ATAAATGTTAGCCCCAGAATG----------------TGCATCGCCACGGCCCTTGGCTTTGCAGGCTCCCAGGCTAAGGATGGC--------------TTCAGTGGCCACCACAAAGCTCCTGGACAGGAAACCGCCTACCTGTGCCACAATTAATTCAGTTTTTGAGTCGTCTGTGCTGCTGTTTTCTATTG-GTGCTGCAGTTTGCTTTTTCA--------CCTTACAACTGCACTTCT--TTGAGTCTGGAAA----AGCCTCTTCTCTGGAGAAATGATCAATT-GTGGGAACACTCCAGTTGTGAAATTATTCAGGGGTCCCTTAGAGGTGCTGAGAGTGATGGAGAGCATGTTCTGTCAATACTTCAGAAAATATGGG---GCAGGCAATACAGGTATTGATCTTTCCT--GCAGACAGATACCTGTCTAAATTCCACTGAAAATACTTGCTACCCCTAATGGCTCCCAAACTTGTCATTTTTCTACTGCTTTG-GGAACAGATTC-ATAGGATCCCTTCTTATACAG--------------------ATGACGTCTGTATAAGGTGTGTGTTCTGGATAAGGTTCTGGG------------TTAGCCTGG----------GCCAGCTGCAGCTTTAGTCAGTAAGAGCTGTGTGACACTG
s HiC_scaffold_1 139884245 1098 + 233722169 CAGTGTCTGGAAAGGGTCATTCATCTAAGCACATAATTCAAGGTGCTCTGTCCAAATCCCAGCATAGCCACTGACGATGgcagaagaagaaaattagagCTGATGGTAACATAGTGGGAACCACAGGACCTCGATTTCCTGGCCTTCCTCAGTAAAGATGTTAACAATGGGACAAAGTTATTGGCAACTT-GCTCAAAGAAAGAGCATTCCTCCAAGAATCCAACCTGCACACCGTGCT-TTTTAGGGCCTGTACATGTAGGTTCACCTATGTGAATTTACCGTGCTTGTTTAATATCTCTGGTAAGATGAAAAACGATGCCTGCTCAGTGCTGATAGCAACGTCTCTGGACACCAGGAAAGTGTCCCTGAGGACTGAATGGCG--GCTGCTTCTGC---TGGTGACTGAAAACTTTGTCCTGAGTGCGTTGCCCTGGTGACAATGCCTGTCGCAGGCACGAACGCCAGAGTGCATGCTGATGGACCCCTGCACCGCCAGGGACCTCACCTTCATGGGCTCACTGGTCAGTGATGACCCGTTTTAGAGGATTTTGTCAGCTGCCGTTAAGCGGGTAGACAGGGAACTGT-TAACTATCCCG----TATTTCACCTTACAGGTCAGCTCTTGTGAAGCTGTCAATTCCATATCCTCGTTTGCTTTTTCAAATCTGTGTCTGCCTCCTGTGCTTCTCTTTGAGCCTGAAAATCAGAGCGTCC-----AGGACGATGACAGATTTATGGGGACACACTGGTTATCAAATTATTCAGGGTCCCCTTAGAGGTTCTGAAAGTGATAAAGAACGTGCTGGGGTAGGACTCCAGGAAATATGGGAGCGCAGG--GGACAGGCATTGATCTTTCCTAGGCCTCTGATTCCCCATCTATAAGCT-CTGAAAGTGTCTCTCAGCCCTAATGTCTCATAAATCTATAATTTCTCCTCTGCTTTGAGGAGCATAGCCTTTAAAAAGCCTTCCTATTCAGGCACACATCATTTGCTCATTATTTTCTCTGTAAGAGAAGTGTAAGCTGG--CAGGTGTTGGGCAGAAAATAGCATTAGATTAGAACTCAGGAAGCAGATTGTAGCCTTGATCAATAAGAGCAAAATGGCACTG

a score=49951
s chr3           153039497 1131 + 160039680 cccactttacaggtgaagaaaacgagactgaaacaaattaaacaatctgccttgaggtaacCCGGACCATGCAATGCTGAT----------CCCAGTATTGACCCTACAATGTTGAGTGTTGCTTCATAAACACTTAATGCAAGATCCCTAGAGTGAGA-GCTAGACTACTAATGTATTCATCTTCTACCTTGTCTTTTTGTGAATGGAAAAAATGACAATTTTATTTGCTATCTAATGGTCTAATTTTTTTTTTGAGAATTGAATTTAAATGATATCATCAATCACCTAGCCAGATAATATATGGCTTCAGGAAACAAAATTAAAATG----AAGCAGTTAAGCATCTATTTTATTTTTCTTTCAGATTTTTTTTCAGAACCAGTACGAGGTG----------CACCTGTT--------GTGAAATGCAGTGTTTAACTTGTTCTTTC-----ATGGAGCAAGTGTTCATGTCAGATTCAGGTTCTGCAGATGGATTGTGCAGAAATGAAATGTCAGGTTTCTTATTCACACATCTAATTTCCTTTTGACCTCAGAGAATTCC-CAAATCTGATGAGATGGAGAGGTAGGGAGATGAGAAACATCAGCTGCTCTTAGATAGAAGCAATGAAGctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctccttcttctTtgtgtgtgtgtgtgtgtgtgtgtTTTATGGTATCTATTTGGCAGTTACTAAATGGTGGTCTCAGAGACACCCATATGTCATGCTTAATTAGGGGCTATAAATGGGTCTTCAGCAAATATTTCATTAAAACTAGA--TTTCAAGCAATAGAAAAATATTATACCCAAGCTCTAATGGCAAATACTTCACAAAAATACTACAGAGAAATAGGGGGAAATGACTAATATGCTATATTATCCCAGTTTT------AATTAGACCCATAGAATGTTAAAATGAGAAGAAAGCTCAGAGAGAAAGCAGCTGGGAGGTA-AGAACTAAATATgcatttaaataaatatgcttcatttcatacccacagcattggtagacggttggaataa---ttattattttacatgtgaggatattggg----tggaggggccttctaacttgcccaacatcacagatggataaagcaagaaaaggattcaaacctgggctcttctggttt
s HiC_scaffold_1 139887474 1080 + 233722169 cccactttacagatgaagagaCTGAGGCTGACTCA-----------CTGCA--AGGGCAA------------AGTGTTGATTGCTCTCCACCTCAAGGGTGATTCAGCCCCAGTgctcatcattttaaaaagacttaCTGTGAGTTCCCTAAGGGAGGATGCCAGACTTTTAATTTACTcatct---accttttctttttgtaaatggaAAATATGACAATTTTATTTGCAAACTAATGGACTAATTTTTTT---GAGAATGGAATTTAAATGATATCATCAATCACCTAGCCAGATGATGCATGGCTtcaggaaacaaaattaaaatagttaaagCAGTTaagcatatattttatttctctttt-gctcttctAACAGAACTGGAATACAGTAGATGCACCAACACCTGTTTATTGTTTGCAAAATGCCatatttaacttgttcttttctttaattgAGCACGATTTCATGTCAAATTCAGATTCTGTGGATGGattgtttagaaataaaatgtcaagTTTCTTGTTCACGCATCTAATTTCTTTTTGACCTCAGAGAATTCCACAAATCTAATGAAACTGCTAGGTAGGGGAATGAGAAGAATTGGCTGCTATCGGGCAG----------------------------------------------------------TTTTCTTCTTTATGCAT---------------TTTTATGGTATCTATTTTGTAATTACTCAGTGGTGATCTCAGGGACATCCATCTGTCATGCCTAATTAGGGACTATAAATGGATTTTCagcaaatatttcattaaaaatgaaacttcCAAGTAATAGAAAAATACTATTTCCAAGCTATAATAGCAAGTGCTTTACAAAAACATTACAgagaaaaagggggaaatgaATAATACACTATATTATCTCAATTTTAATTAGAATTAGACTCATAGAATGTTAAAATGGGAAGAGAGCTCAGAGAATGAGAGGCTGGGAAGTAGAGAACTAAACATCCATTCAAATAAATATGCTTCATTTAGTACTCACAACATCACTAGAAAGTTGGAATAATTCTTGTTATCTTACATATGGAGAAATGCGAGCCTCAGAGAAGCTTTGTAATTTACCTAACTTCACACA-GGAAATAGAAAAGCCAGTACTAAAACTTCagtttacttgattt

a score=32678
s chr3           153054193 5226 + 160039680 [encoded data, 5585 characters]
s HiC_scaffold_1 139898363 4524 + 233722169 [encoded data, 5585 characters]

a score=22507
s chr3           153062269 1528 + 160039680 AGCACATGCCACACTCCTTCATGGATGCATGCTTGCTTCTCTCTCTCCCACAATGCACTGCACAT-GGAGGATGCAGTGATCACATGCTAAGGGGATAGTTGAAGCCAAGCGGAGACCAGATCCTG--GTGCAGAAGGAAAGAGAA-CTGAGCAATGTGACCAGATCTTTATTTCTGATAGCTTTGAGA------------GGAGGGCTGACTTAAAGGGG---CAGGGGAGCGGTAGATGGGCATTAAAAGAAGTG--TTTTAAAACCTACTTTACAACTTTACAAAGACCCTTTCCAGAAGAATCTTAAAAAT--AATGACCAATAGAAACAAACCTCTAGGGAGGCAAATATGACCCAACTTTGTCTCATATTTCTTACATGTGTGGAACCCCAAATCCTCATGAAGACTTGCTCAACATGATTGTATGGGTGCTTAGTGACTC-TACCCCTCTCCTTTGGTCCCTGGCCCACCCTTCCTCTGTCTCTCTCCTTTTTGTTGGCACACTGCTTGAAGGAAAAAACAACTCCCAATTCCAATTCAGCCAGTTCTCAAACAACTGCACAGCACACTTCCACCGAGTTGCTGAAGATTCTCACAGTGTCTAAGTGGCTCACTCTGTTGACAGCTCTTTGGCTTCTGAAATCAAGCTGCTCTTCTCCCCCAAAAATCTAAACTCTTAATCACA--CTTTATCTTTTCATGCCCAGCCTCATCTCCACTCAACAGTTGGTCCATTAGACGAGAATTGTCTTTTAAATGTT-ATACGCCCCCCTTTGC-CTCGAAATCCACTGGAACAATGAACGCCAGCCACTGTCAGTCAGTCCTCTGCTTCAGTGAGAATC-ATCAACGTACTGAACTTTCTGATCAGTACTCTCTGGCTTCTGTTTCTTTCAATGGAATGGCTTCTAGATAATTCAAGCGCTACCAGTATATCAACAAGGAAGCGTGGCATCTCCCCTCCCCCATCAGACCCA------CCTCTCAGTGCTCCTCTCCACGAGGGAAGCCATTCTACTCTTAGGGAGCCAAGGTGTAATTCTCAAAGCAAGACCTTGCACTCCTCCCTGCTTCAGGACAC-------CTGGAGACCCAGCTAATGCTTGAGTCTGCTTGGCTCTGTATTTATAGTAACTTTTT--------------Tagcaag----------------------------ccccaggattctctt-----------------------------gtctctgcctccccaacactagggttacaagcaca----------------cccccatcacttggat-----ttttttacat----gaattctggggaccaggctcaggtcttca------tacctaaaaggcaaacactct-------------------cctgacat------caatttcccagccc------cGTTTTCCCAGGCTTGTCCTATAGAGAAGCTGATT--CATCTGGCTGAGAGATGCTCTTCCACTGGCACAGAGACAAAACCC---CTGGCAGATCTTAACCTCGTACATAAACGCTGTGCCTTATGTTTAAGCTCTGCAGACCCTTGCCTTTCTTGCCTT-TCTTACCTATGTTTTGAGCTATTTATTCTCTTCCACCATAAAGCCAAGTCTTTATCATCTGTCGGGCATGCTTACAAAGTACATCTCAGTTTACTAGGTGTAGCAGG
s HiC_scaffold_1 139904402 1609 + 233722169 AGCCCACACCACGCTGTATTACGAATGCTTGTTC--------CTCTCCCATGATAGACTGCTTACAGGAGTCTGTAAGTAACGTGTGCTACCTGGATGTTTGAATCTGCGTGGGGACCAGATCATACAGGGCATAAGGCGTGAGTATCCAAGTGATGAGACTGGA-----GTTTCCCATGGTTTTGGGAATTGGAGGAGTGGGAAGGCT---TCAAAGGAGGGCAAAGAAAGCAGCAGA-aggtattaaaataaattattttgatgaACTACCTCATG-CTTCACAT---CTTCTTTGGTAATCACCTTCAAGAACAAATGATCACAAGAAACAG---TTAAGGTAGGCAGATATGGCCCAACAGTCTTGCATATTTTTTGCAAAACATGAACCCTAAAGCCTAAAGGC-ATTTCTTTAACCTG-TTTTACAGTAAATAAATTGTACGTTTCCCTCCCTTTTGGTTCCGAGCCCAGCGTCCCT-TGT-TGTCTCCTCTTCCCTGGCAAACTCTCT------AAGAACTCGTTCT--TTCCAACTCAGCTGTATCTCGTGCAACGGCAAACTATGCTTTCACCACTTTCCTGAAAATTCTCACATTGTCTAAGTGGTTCACTTGGTTGACAGCTCCTTGGCTTCTAAAATCATACT----TTTTCC----AAGATCTGaaatattaattgtattttttctctttccatgccCAGCCTCATTCTCACTCCACAGCTGATCCACTGTGGTGAAATTGCCTTTTAAGGGTTCACATGCCTCTCTCTGTGCTTTGAATCTAGGGAA------AACAACA-TTACTGTCATTTA--CCTC----CCAATGAGTTTTAACCAATCAATCTGACTTCCAAATCAGTATCCCTTGGCC----TTTCTTTCAAATGA-----------ACACCTCAGATTCTACCCAAATTTGAA--------TGCCACATCTCCCTCCCCCCATAAAGCCTATTCATTCTCCTCACCCTTTATTTCCATTAATAAAATCATCACACACTAAATTAGCCAAGGTGTAATCCTCAGAGTAA---CTCATGCCTCTTCTTTCTTAGTCTCACATACATGCTCAAGTCCCA-TTAATAGTCAGGTCTGGTTAATTATATCCATAGAAGAACTTTTCAGTTATTCATCCAATAAGAAGAATTGTGAAAAAGTGATGCTGGAAACACCCCCATCACCATCATCTGAGCAGCAAGATAGCCCGAGCTGGAGAATCTTCCTCACCCAGATCCCAGGGGTCAAGTCCCAGGGGCCAGGTGGCTTCCTCCCTTCTCTTAGGTCACTATTTTTCAGATTTCCAGATTCTAAAGAGC-----CAGAATTTCAGACCAGTACCAAAAGTGCTGGCACTTTTAACTCAGACAGTCTCAACCCAGGCACCCTATGCATTTCTCCAATGCTGAGTTTGTTTTTTCAAGCTTATCTTCTAAAAAGATAGGCTCGCAGCTGGCTTGGAG-CATCCTTCCACTAGAAC----ACAAACTCCAAATGGATAGGTGTGTCCAGCATAATTCAATGGAGGGTAATA---ATAAGGTCTGGGGACCTTTGGCTTTCTTGACTTCTTTTAACCCTGTTt---gtgtgttattttcttcttcaatAAAGCCTACTCTATAACCCTTGTCGTGTGTCCTGGAAATATGTATCTCAATTCATTGTACATACTAGG

a score=35547
s chr3           153064590 1696 + 160039680 TTTGTTATAGATAATATTCAGAACTAAA-ATAAAAATAAATGCAAGCTTTCATTACTAAATGATGAGTGTTCAT--TTTGAGAAGTGTACCATTAGGTCATCTCATCACTGTGTGAACATCATAGAAGACAAACTATGACAGTTATAGGTTCTACCA-----------CCTATGAGGGCGCTGTGCTGCAC-AGGCAGATGCTGGCTGAAGTATTACTGTGTGCAGTGTGACTGTATACAATTAAACACAAACCAAACAACAAAAC-AGCAAAGTTCTAATTAGCAA--------------------------ATAGAAAGACATA------CTTTGAATATTTCTGTGTTCTTTCATGCATTTCT----GTATCATAA-TTCAAACTAGTCAACAAAGGAA---------TGCTGTTTATTTAAGAACACTGTTCATAATGGTATCTGGGAACAACAGG--TTTGTGACTTTTTTCAGAACAGATAGATCACCTACTTATCTTGATTCTGCCTGTGGATTAACCACTGTCTGCCAGTCTTAAAGAGCCACCCCT-GTTCCCCAGGAGGCGTTCTTCTTCCGTTGA-GATAAGGTTGTCATTATGGCATGTT-----------TAAATACTCATTCAATCCAGTTATTCCTGGAATTG-GAACAGGAAAGTGACATTTCAAGTTATATTTGTTTTTAAAATTTTTTTTTGAGAATATATTCATGGTCACAAGACAGAACCAGAGGAAAAGCATGAACCAACCCATCCCAGCCATTCTGAAATGGCTTAACCATAAACCAGGCTTTCTATCCCAGGTTCCATTATGTCTGAAATTTGGATGAAATTCTGTTCAAACTCCAGCAAGTCCTCCCTTCTTCTGGACCATCATTGACAGTGGACCATCATTGACAGTGGACCATCATTGACAGTGGACCATCATTGACAGTGGACCATCATTGGCACTGGACCATCATTGACAGTGGACCATCATTAGCACTGGACCATCATTAGCAGTGGCTGGCCTTTACTTGACATAAACTA------TCACTTAATGAATTGATCTCTGTCATTTTCTTATAAACCAGAAACATTTAA--AGGGCTATGTTATCTGAA---------TTCCATG--------TCAGGGTCTCAATTTATTGTCTACCTTATGAAACAAAAATCACGTTGTGGGGAAATGCGTTTCACTTCAGTTTTCCACTAGAAAGAAGAATGTGTGTTGCTCTAGTTGTTAAAAGAATTTCATGTGGAGTTTGTATGAATTCCATGTAGGGCAGCTGTCATTTGGCCATTTGGTAGTGTCATGCTGACCTCACACTATTAAATATACTTACTAACCAATTTAAAATCAGAACCTGTCACTTTAGGTCAAGACTGTAAATTATGGCTAGAGCGTTTTGACTGGTCTACACAG--TCACTTCTTTTGAAAGCAGCATTGAATACTCT---AAAATGAGGCAT---ATATAATTACTAGAGTCCCATGGAATTTTACCACTCTGGACTGTTTTACAGTTAGCTAGCATAATCATTTATTTACAAAATGGAGCCTACTGAATATTCAACTCCCCCACTGCGTCCAAGTGGCCATAATGTAACCATGAGCAACAAATGTGGTGGTAGTGGAGTGATCCAGAGCATATGTCTGCTTCGTTTATGGCTCTTGTCTGTTTGGTTTTGTTTTCTTCTGTTTGG------------GGTCTCATCAAAATGGGGAAA-GAAATTCAAGCTTTTCTGAAAGAGCTTTTATGTCCCAGGTTTGATCCCTTACTTTCTCTGCCTTAAAAGTC
s HiC_scaffold_1 139906317 1647 + 233722169 TTCTTCATAGATAATATACAAAGCTACATATAAAAGTCAGTGCAATCGT--GTTGTTTAGTGATCGGCACACACAGTCTGAGGTATGCACCCCAAGGGAACTGCATTATCATGCCAGTGTCACAGACCACACACTAAGACATCTATG----CCACTAGCTGACCTGGTCTTAGGGGACCACTGTGTTATAGGAATCTGATGTTGAGGGAAACATTACGTGGTGCAG---GACTGCTtgcaat-aaatataaacaaaactatgGAACCAGTAAAATACCAACGgacaacattattttaatttgaaagatCAGTAACAGAAAGACAAAGCTGAGCTTCCTATGCTTCTAATTTCTATCTTTAATCTCTTGGTgtatcttaaatttaaaatactaaagaAGGTAAAGAGGTCAGTGCTGCATACTTAAGAACGCTGTACATAATGTTCTTGAGaaacatcaaaattttatttactacttTGGGATGTTCAGACCACCCATGTACCCTAATTCTGCCTGCAGTCTAATCATCATCTGCCAGTTTTAATGAGCTGTCTGTCAGTCCCTGTGAAGCTACCTTGTTCACTTGAAGATAAGGTTATCGTCATAGCATGCTCAAATCTGCATTAAATGATTACTTAATCCAATTATTATTGGATTTGTGAACAGGATAATAATATTtcaagttactttttttcttacacATGTTGT-----AAAATATCAAAAGCCTTGGCCCAGAGCCAGAGGAAGTG-----ACCACCTCA----GACCACGTTGAAATCGCTTGGCCACAAATCacattttttgtcattgtttcctTTACATCTgaaactgagaagaaaatttaCACAGCTCCCCTAAGAAGCCCCCTTTAT---------------------------------------------------------------------------------------------------ATAGTGTCCCAGGAT------------ATTATT---------TGGCCTTTACTTGGCATAAACAAAGCATTTAACTTAATAAatttgtcttagttcattttgTATAAGCCAGCAATACTGAGGGAGGGCAAATTGCTCTGCACAATATTCTTTCCGTGATTTTGCATTAGAGTCTCAATTTATTGTCTACTGTAAGGAACAAAAATCAcattctaataaaatatatttttatttccattactgCAAGAAAGAAAGGTTT-TGTCATTATAACTGGTAAAGTAATTCCATGTGAATATAACA--AATTCAGTGTAGGACAATTGTCATCTTGCCATTTGAAAGTGTCATTCTAATCTCATATAATCAAGTACACTTACTAACCCATTAGAAGTTGAACACTGTCTCTTGAGGTCAGGGTTATAAACTGGTCATGTAGTATTTTGTTTGGACCACatagaattatttc-tttaaaatcagatttgaatggtttttaaaaatgaagcataaaaTGTCTGTGCTAGTGT------GGGCCCTAGCACTCTGGGCTGCTTTGTAGTGAGC--------TCATTTCTTCACAGAATGAAATCTACTGGGTATACAACACCCGTACTGATCCACAGTCACC-TCAGGGGACCACAGACACTAAATATGATAACAATTAAATAATCCAGAGCATATGTGTCTTCCATCTAGggttcttg-------ggtttttttttcgtttgtttgtttgtttaacatCTTTCTCATCaacatcaaaaaatgaaagacaagtttctttgagaaa--ttttgcattCCAAGAGTG-TTTCTCACTTCCTCTTCCGTGGAGACC

a score=76010
s chr3           153069891 4363 + 160039680 [encoded data, 4760 characters]
s HiC_scaffold_1 139911015 4149 + 233722169 [encoded data, 4760 characters]

a score=35003
s chr3           153076221 3181 + 160039680 AACTTCGGTTAGATAAAGGA-AACACAGAATCTTTAAAAACACACATAGTGGGGTATTTCTGACAAGGTAGCAGCTGAGTTTTAAAGGGAAGCAGAGATTTGGGGAGTCACATCTTTCCACTTTCCTTTTCTTCCTTTCCATTGTGGCTCCTTCTGTCTTCCATC--------CGCTGATACTGAATGGCATGTCAGTTCTCAGACTTGTCCAATT--------CCAAGCAGTCAGAGGGGAT-----GATGAAGGCGGAAAGGCTTTAGTTGCCCTAAATTCCAACCTTGGTTTTAGCTGGACAGATTGGCACATGCTTGCTATCCCCATACATACTAAGAACGTCAGATCACCAGGGCAGAACATCTGATAAATAGAAA-TTGAAGCTCATCGCC------TGACTAAAAGTTTGTATTTTCTGAGATCCCCCC-GTGCCTCTTTATACATCAGAAGCTTCCTTGCAAGCTAGGACTCAAGTACATCAGAGCAGGA----GAGACTTA----------ACAAGCCTTTTAACTTCGCTGTTTATG-GCTGACTTTGAATTCCCTTTAGGTTTAATCCTTAGAAATAATATTGCT-------------CTGAAAGATTTTGCAAAATGCTGGTCTCCTGACTCCTGTTATGATGGTGTGGGAAGAAAATACCACGCAAGGGGAACTTTCCCCTTCACCCTTTTCTCGAAATGAATGAAATGTCCTTTAGACCACTGGCAGCATCCTTACTACATC----AGAGTCAGAATTGTTGCAGTAGAGCTGGAAAGAGAAAGAAAGGTCAGCTGAGGACCTCCACTATCCAAACCAA--GCTAAAGTGCACAGCAG--AAAGAAAATTTGGAAGGCAAAATTGTTGAAACCAAAGAGAA--------GAGGTGTGGGGCATATCTCACTGGTAGAGTACTT-------TCAGAGCCTGTACTTTCAATGGCTCTCAGCTCAATTTACTGCAGAGAGATGGGGTGGAATTAGTAATCACAAGGACAGGCCTCAGGTACGTATGAGGACATAAAGATCATGACAGGAT--TATGCTGGAGAAG------GAAAGCAGCAAGACCAAGAAGTCTGT-------GCTCC----CAGGAGATTGAACTGGGGCTCACTGAGCCCTG---------------------AAGGGGAGTTGAAA----------------------------GTGACATAGGAGCCAGGCTTAGAGAGAGAGTTGCGCAGAG---TCCTCGCAGAAAAACTCAGGGCAGAGGAA-AGAGATAATGATAAAAGAC------CTCTCAGAGCCCTGCCATGGAAGGCCTCCTGAAAGC-GGATCAATCATGCAGAGTACCATTTTGAAATTACTGCCTGTCGTCTTAGCTACGAACCCCGTTAGCCCTTTGTGCTTATTGG--GGTCCCTTTTCCTGATAGAATACAGCCAGTC---------------GTCCATCAGAAATGTAGCTCTGTGTTCGTCAGAAGCGAGCTGTTGCACATAGCCATTCCTCT---GT--------CTTCGAGCCCCTTACCAGTTCTTAGTGCCTTTTGTGTGGTGCTAGGGGCTGTGGAATCTCAAGGCTCAG-GCGTACTGGGCAAGAGCTCTGCTGCCCAGCTCGCCCAGTGCTCACAGGT--------CTTCTGAAGGAAGCAATGCTGGTGTGTTCAAGAGCAGTGTGGAAAGAGGAGCCTCTGGGTTGCATGGGGGGG-----------------GGGGGGAGGGACTCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTCATGAGGGTGTTCCCAAGCTGCAGTTCCAGTTTTGACCAGTCCCACAGTATGTCTGACTTAACATAATC-CATGCATGGAGCACACGTTTACAGCCAACCCTAAACCAGCCATCAGTCTATTTACTG-TGGAGGAAAGTTAGAGAAGGCATGGCTAGATGAAGCACCCAGGTACTAGAGAAGGCATGGTCGGGCCCTAGCTGGATTTAATGAAATTCTTTCCAAATGGTGCAGTCTGTTTAAGGGAGAACTGTTGTCAG-CATGGGCACCTGGTAGACATGGAAACATGCCAGTAAGTGAGTT--------TGTATTTCCTCTTCCTTAGCTGTAAATTGTATC-----AACTCATTTAATAGTAATTCA----GTTCTTCCTGAGATTAAAGGAGGTTTTTGTGGGCTCCGCCCCACACTGGCCGCTCGTTGGTCTGCTTAACCTTTGCATTCAAACTTCCTGG-TATAAAACC--------GCTTTCTGTGTCCTTGACTGTTCTACCTCTCTGTTTCTGGGACCAGCGTGTGCTTGCTCCCAAAGCAGAATTCTCCCCGGCTTAGCAGTTCCTCCTGCGCTCTTGGGGACAGCTGCTTGACGGTGACTATGTGGGAAGCTGGAGGCTGTCCAGCTCCATT-GGCAGAGACTAATCATTTAGAATGTTTTGTTTCTTTCATTTGTTTCTCACTCTGCATTgaagaaaaagtagaagaaaaagaaaaagaaAGCTGGAAATGTGTCTCCCGAGTGGGCCGTAGAGGTAAGTGTGTGGGCAAAGTTGGAGGGATGGGACCAGGCACACGCACCCTCCCTGCCACCTGTTAGCTGAGAAATTCATCTCCTTTCTCTTCTGTGCTTTGTTCCTGCCATCTGCTGAGCTATATTAGTCAGGTCCCTGCGGTTACACAT-ACAGGAACTAACTTGACCTCACACAAAGACAAGGCATGATTGAGAATACAGGGACCTTTTCCAAAACCCACCATGGATATGAACACAGGT-AGTCtccatctatctctctaccatctaccatctgtctaccatcta-actatccatttatctatctatcatctatctatctatctatctatctatctatctatctatctatctatctatctatccatctatctatGATATCTTTCTCTATTTT------TACCTTTTTTAATGTC-----TATCTGCCTCTCCTGTGTCTAGAT---TTCCTATCCAAGAAGAGCAAGGTGCTTATACACAGCACCTAACTCCAGATCTTAGAAATCACTTAGCTGATGAGCTGGGCTCTTCACAGTCCTGGTCCCTTGTCTGCCCCGGAAT-----ACCTCAG--TGA--------------CAACT--------------AGGTATCTAGCATACGTTTGCTGAGAAGATCCACTTCTACGGACCGAGAGGCCATTTCTGAAC-AGAGGAAGTAACTGCAGATTGGGCAGGCTGAATAGATCCCCTCACTCTGGAAATGACCCATACCACACCCAGCTTTCGTAGATCCTTTCAGTTTACTGTATATATACATTTGATATAGAGAATATGCAATCATTGTAATTATTCAAGGCTGTCCA-CTGC-CCTAGGCCAAATTCCTTTGATGAGTGTCACTATAATTATACTAGTCACGAATCTCTATGTGTCCACAT-TTGGTATTTAAGT
s HiC_scaffold_1 139918205 3344 + 233722169 aactttaattAGATAAAGAACAACATAGA-CATTTAG-------CACAATGGTATTTCTCTGATTGAGATGCAGCTGAgttggaggagagag-aaagggctAAAGactggctttttcttcttttccctccttggttttcttctttacattcttttccctttcatcttTTTTAGCACTAATGTTGGAGGACACCTAAGT-ATCAGACTCATCATCTTTTAGAAGACTGAAGAATCAAAGGGGACCCCAAGTTGAAGG--GAAGGACTCTAG----------------CCTTGATTTTACCCTGAAACACCAAAGCATTCTTACAGTTATCACA---ACTAGC----TTAGTTCACCAGGGTAAAAGATCTGGGAAGTCAAAACTTGGAGCAAAATTCCAGATAGTGGCTAAGAATTCGCATTTTCTGATGTCTCCCCTGGGATTCTTTGTACATCAGAAGTTCAGAGGAGAGCCAAGATTCAGGGAATTCAGATCTTGGTTACAAAACTTTGGCTGCAACTATTAGccttttaaatttcctctttacGTGTCTGTTCAGGATTTTCTTTATGAACAATCTTTAAGAATaatattactaaggttttttcCTCCAAAAGATTTTGTAAGA----AGTCTCCTGCTTCCTATTAAGGTGGCACATGAAGGTAATGTCAAGGACAGTACACTTCTGTCTTCAGCATTTTCT---------TGGAATGTTCCTTATGCTGTTGGAGGCATCCACACTGCCTTGAAAAGGGTGAGAATTTTTGTAGCAGAAATGCAaagagaggg--------gccagggattt---------agctcaatggcataagtgcttgcctggcaagtgcaaggtcgtaagttcgatccctggtaccaaaaacagccaactgtgaggctctgggttcacttcctaggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcacgtgtatgtggtggagggaa---ggaaggCATTGCGATGCCCAAGGACAGTTCTGAAGGATG---AGGGACCTAAA-ATCATGCCAGAATGCCTTATTGAAAAAGAGACTGGAGAGAAGTATAAAATGGAAGCTTGGTGAAATAGCTCAGTGATAggatgcttgcctggcatgcacaaagcCATGgttttgattcccagcactggaaaagtaaataaaaataaagaagtatatgaataaataaataagataaaatagaatTTGAACTTAAGGAACAAGCTGGACAAGGATTTCCACTAAGATTGCTTCAG--TAGGGGAATGGAGAGGGCCACAAGAGACTATTGTCTCTCAGG----TGGAATGG--TGCCTCATGGACGCCAGACTCATTATGTAAAGCATC----------------------TACCAGCTA-----------AGCCTTTGGTGGGGGCTGGTGGGGTCATTTTGGTGATGACTTCCAGGCCACCTGCTATTGGTGGTTTGTCCATCAGAAGTGTGGCTTTG---------------AACTATCCCAATGGGGCACTCCCCTCATGTTTCAATCACTCTGGGACACCCACCAACTCCTTGTaa-gtgtgtgtggtactagggatc-----atttgagggccttgcacatgccaggcaaatgctctgcctctgagctcttGCA-TCTTCTTAGGTGATGAAACCTTTTGATGCAGGTA-----GGTGGG-----GGGCAGTGTGGAAAGGAACATGGGTGACTTACATAGTGGAGAACCCCACCCCAGTTgtgtaaggaatgtttcactgaATTGACCAGAAGTACAAgctctgtgtctttttaatctgGAAGCTTTAGGCCTTCTTTGTCCAGGCATGTTCTATTGTAGGAGACAACCTTTTGAATATGTTGAATAGAGAAGCAGCATTCTGGTTTTTCATATGTTAATATCACCTTGTATTAATATTCACCTGGGTTGTGATAATTAAGAGGACATTTCCAAACTGTGACACTGATACTGATGATCTCCATAGCACATTCAGTTCAGTTCAATCGCATTCATCATGCATGTGTTAAGTACCAACTCTGAACCAGCTGTGAGACTGCGTACTGGTGGTACCAAGTTA-AGAAGCCATG-----------CTCACACCTACT--------CACGGTGCAGACCCAATCCAGCTCCGTGCGACTCCTTGAAGATACTGCTGCTTATCTAAGATACA----TAGCCAGTCCAGGGCAACTGGGAGACACAGACACGTACTAACAAATGAATTCATCCTCTTTTATTTCCCCT--CTTAGTTGCAAACTGTCACTGCCTCACTCATTCAGCAGTGACCTACATAGCCTTTAACAAGCTTGAAAAAGGTAGTTG-GTGATTGTTTGTACTTTCCCCACTTCCT----------ACCTTGTCATTTGAACTTCCCAGCTCTAAAGTCCTTTCCAAGCCTCCTGGGTCCCTCAGTGTCCA------CTGGCTCCAGGGAAAGCTTCTGCATGCTTCCAAAGCAGAATTCCTACTGGCTTAGCTGTTCCCATTTAGCTCT-GGGAGCAGCTGCTTGAAGGTGGCTGAGGTGGTAGCTGGCGGTTGTCCAGCTCCATTTGGCTTAGACTAATAATTCAGAAGGATTCGTTTC----ATTTGTTTCTCATTCtgaattgaa---------------aaggaaaaaaaca--tgaaaatttgtcTGCTGAGTAGG--ATGGAAGGTAGCAAGTGGGTGAGGTTGAAAGAATGGGACGGGACAT------CGTCCCTGCCATCTGTTAGCTGCGAGATCCAGTTCTGTTCTCCTTTGTGTTCTGTTTCTGCCATCTGCAAAGCTGTATTAGTTAAGTCTCT-TGGTTACACATAACAGGAATTAATTTGACCCCTCTCAGCTCAAATGGATGTTTAAGGATATGGGGATCTTTCTCAGAACCCAA---GGGCAGAAAAACAAGTGAGCCT---------------------------TGCGAAGGATTTAGAGTAGGCACCAGAAAGTCtcggatctttc---ctttcctgctctct-------------------------------CATCTTCTcatgattttccttttctttttgggaGGGGCTTTTTTCTAGGCTTTAGGTATATACTGCCCATGAGTTGAAATGTCTCCCTATTC-------------TCCCCGTA-AAAGCACCTGAATTCACGTTTAAAATTGCATTCAGCTGCAGAGAGTGACAATTCTCAGTTACAGTCCCTTGGCCATGTCTGACTGGTTAGCTTCAGGTTGAGGCTTATCTCTGATCAACCCCCATGAGAGGGAAAGAGATACAGTATAAACTCGAGGAGAAAACTTAATTCTGTGCATAGAGATGCAATTCCCGAGTAAGGAGAAATAATTGGGAGTTGAACACATTCGTTAGGTCCCTCGTTCCTAGTGGTGTGCTACAGCA----CAGCTT----------TTCCAGGTCATTATTTAGAAGCTTTTGTTATAGGGAAGACGTGGTCACCTTCATTCTTCAAGGTAGCCAAGCTGCACCCAAGCCAGAGTCTTTTAGC-AGCAGCACTGGAATTCCACTAGCCATGGATCTTCATGTGGTAATATCTTGGCCTCTAAAT

a score=34993
s chr3           153083279 3174 + 160039680 CAACAACAAAAATAGGCACCTTTGGGG----GTAGGAAAGAGTATGGTGCTTAGAAACGAAATGTTTGATTTTATTTTCTCTTTGCTTGTGAAAAT---------GTTGCCACAACACTGCTCTATTTCCATCCTATTTTCTCTCGCACAGCA---------------------------------CCACTGCCTGGTTCATAGACGCCAGAGAGGTTG---------TCTCAGAAATTCATTCTTCCTTGAGCTTGTAACAGGTTT--CCACTTGAGGAGGGCCGTTAGAAGGGGTTTCTCAGCAAA---CCCCCAGGGAGCCTGTCGTAGTGGGACAGATCTGGAGAACAGCCTAGCCCTCTAGGAGGGAATCGCTAACC-TCTGCCTGTGTTCCCTTTTGTTCCTGG----------TCTC-------CTTTGCTGTGGTTTCCA-GGCAGAATGTACAGTGAGTGTTGAGTTGAGTGTAGAACAAACAATTCCATTTTCTTTGGAAGGCTCCTTGGG---CTCAGTCCC-CCAGGAGGACCAAATCACATTTCAGTAGCTTTCCTGAGGTTCTGTGGGGGAGGGGAGACAAAATGGCCTTTTCTTGTTGCACGTTTTATTGTTGTTTTCTAAATACAACAGAACCTCCAGCTGTATTTCtgtgtatgtctttgcatgtacgtgtgtgtgtgcgcgcgcgcgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtgtgtgtgtatgtctgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgCATGCACTCGAACACTTAAGTCCACTGTTGTGGGCACGCAGAAGAAGAGCTCCTTTCTTCCCTTACTGgtgtgtacgcatgtgtatttacaaatagaggcaggattaaccttgggtggtcttactgtccacctcatcttttgagaccctgaacctcgccaatttggctaggctggccggccaatcgactaggatttttaaaatatgaattctgggaactgaacgcaggtccttatgcttccagg-gcaagctcctcaggaccgattaccatctccctagcAACGCAATGGGCCTTCTTTTAAGGCTTCTAGAAACAGCTGCATGGGTGCTCAGACAGACTTGCAGCCTCTTTGCCTGGTCTTTGTGATCCAGCACACTGGCTTCAGCTCAGTCAATCTTCCACCCTGATTAGTAGCTGGTTCATGTGGGTACCTGTTATATGTGGACGCCA---------------------------GGAGGGTGTCG--------ACTTCTTAATCCTATGCTGTGTAACTAGAAGGGCCGGTTGAAGGTTGAGTAGATGTTTGAAAAACTGAACAAACAAACAGACT-TAGTCTTCCATCTGGCTTCAGATAATTTACATAACACTGGTGCCTCACCAACGTTCATATAACAGCTTTCTCCTTTTCTCACCTGGGTCAAGCGAGATCCCGGTCTATTTTAGTGGCCCCGCCCTGGGCTGGCTCTGTACATCTCTGCTCTGTTGCTGCTCCACTTCCCTCCTTTCCACAGCAGGATTGAAGACAGCTCCACAGGGGTGGTCCTATTACGGATATTTTCTGATCAGTTCCAGTTCTGAATGGAGGTGGTGGCTCTGTGGTGTCTGCTGTGAGTCCACGGGTTAAACCGATAATGAGCCTGTCCGGACAAATAGGCCTGCAATTGTTTTAGCCAGGCCAAAGGAGGCGGGCCAAGAGCCAAGTACAGATGCTGCAGAGAAGCAAGCTGCCGGGAGCCCACAGCGCGCGGGATTAGTGAAATCACCCGTGCTCAGCTTGCA-CCAGGAGCTAAAGCGGCTTTGGGAAAGGCATATGGCaaaaaaaaaaaaaaaaaaaaaaGCCAGAGTTAATCGCAAAGTCAGGCGTTCAGGAAAGCAGCATCTGTTGGAAAGAAAGCGTACAGCCACTAC-----AGTGACTT---------TGCTCCTGCTCCATCACACAGGAGGATGTGCCCAGGTGGATTAGCAGGGTGACAAACCACAGAGCTGCCAGGCCCACAGG----AGGCCCCAGAGCCCGTGACCA--CTGATGCACAGGCCCGCGGCAGCCAGCTGTGGCTCTGATTA---ACTGCAGCAGCATGGGCAGCTCTGGGGCCTGGCTCCATCTCGGTTTCCTTCCACGCA---CGAATCAGCCACTGCCAGGCTGTTG----TTTCCTCCCCATTCGACCCGCACTGCCAGGGATCAACCAGAGCCTGCACTAGAGTGCACAACCTCATTCAAACAGCTTTGGCCAGGTGCCAGCATCCTGCTTTGCGCTCCTGTGTTAGATAATGAGGGCTCCTTTGCTCCGAGTT--CTGAGTCCATCAGTGTTGCCAC--------------CCCTGAGC--------------------ACTCCCAGAG--ACCAGGAGAGAAGCAGGGCTGATGGACGGCCAAAGAGGCACGTTAGCCTGCCTGGAATTTGTTCTCTCAGTTGGTAATAGACAAATGACCATGATTTAAACGTCTTCGGCCTTTCTCCGTTGGACTGCTTGACAATACATCTGCTTGTGTTTTCAGAGAGGTATTCCAGGCATACCAG-TGGATGAAACGGAGTTGCTTATGAAAATAGATTCCCAAGT-GACCTATAATGGGGAAACTCTTGGTTTAATATAGTTTCCTT----------------------TGTAAATCCCATACAGATTCAAAGCTTGGAAGAT-ACTGGCGTGCCTT-TGGATGCCTTTAGTGGATAGGACATGCAAATCTTCCCGGGTTGTCTTT-----TGGCCTCAGTCCTCTTTTCTGGAAGATTAATtgatatggattgaattacatcttccaatattcagagattgaagccctaatttccagtgctctggcatatggttacaaagacaagcgtgtcc----------agctagttaaaaagaggt-cagactctgacaggctgaaagtctagagtaata---cagctgtgtctacagaaaatggaacactggcacatagaagcacaca---gaggggggtgcctgt-aaagactgaagtcaTTCTGCCCATAGCCATGGG-ACCAGCAGATTCTTAGAGGGAGTTCTGGAGCAGGGGAGAGGGAGCCCAGGCCCTGACCCTTCCTCCACCTCAGGCTTCTCATCTCAGGAACT-TGACA-------------------------------------------------------CAGTAATGGAAT--TCCTCA---GAGCTCTTTTGAGGAACCAAGGCTGCTT----------------AGCAGTGACAGCAGTGTAAGAACATAGCCACAGAAGGTTAGGAGTTT---ACAGTCAAAGCTCAATTAAGATTCTGTGCGTGTTTCT-GGGACAGTCAGCTCTGGTTACATCCATGGGATTTTACATTTAAAAGAAA
s HiC_scaffold_1 139924600 3003 + 233722169 CAGCCACCAAAATGGGTGGCTGTGGGGCgggagagggaaaaataaagt---cagaaataaaaa---------tatttt------gtttgtgaaAATATTATGAATGTTGCCAAAACCAAGTGAGATTTCTACTGTGTTTTACATCTTGTAGCAATTCCAGTGCCTAGCATCCAGCACCCTTGTGAACCACCCTCTGGTTCACAGATCCCAAGGAGGTTGCATATTTCGTCTCAGAAATTCGTTCTTCCTCGAACTTACAACATGTTTAGCCTCT----GAGGGCATTCAGAAGGAATTGCTTAGAAAGAGCCCTGCAGGGAGCTCGTCATAATAATACAGTTTTAGAGAATACTCTAGACCTCTTGGAGGGAATCACTAACCACCCTCCTgtgtttcctttcccttctggATCTCCAAGCTCTCTGCAgtgctttggtttggtttccaAGGCAGAATGTACAATA--TGTTA--CTGATTGAAGAACAG----TTCAGTTTTATACAATAGTCGTGTTGGGTTTCTCTGTCTCACCAGGAGGACAGTACTATTTTCCCATAGTTTCCCC-----------------------CATTATGCCCCT--------GTGCGTTTTGCTCTTT------------------ACCTTC--------------------CCTGGAATGGATGGGGGCG-----------------------GCAGGTACACACACGTCCTTGTCAAAGCAGGTCT---------CATCCACACATg-------------------------------------------atgtttcttc-------------tttaaat----------gaGCCAGCAGAGAACAAAC--CATGCCTCC-------GTGTGTGTCCAGGTGCACATGTATGC-GATGCACG---------------------TATGCGGTGAGTCCTTTGAGG----------------TGTGGC-------GATGGGGAAGAAAACAGGATTTTT---------------------------------------TTCCAGGTGCGAGCTC------------------------------------AGACTTCTC------CTTC--------ACTGCCTGCTTGACTCAACAG-CCCACGGCCTCTGCGTCT------------CCAGCTCTGATTTTTGGGCTCAGCTCGTCGTTTAACCTGCTAAGCCGTCGTTTCATGTGACTATGTTTGGGATTTAGAGGACGAAACTGAAAGCAGCAGAAGTTTGCTTCGGAGGATGTGACAAGGATCACACCCCGTTTTTATG-TGTGCA--TGGAAGAGTTCGCTGAGAG------AGTTTTctttacaacaaaacaaaacaa-agactgtATTCTCCCATCTGTTCTCAAGtgatttattcaatatttatttcttattgaaATTTGTACATCGATATCCACGTCTCC--ACCTACCCAAAGCTAGTTGCCTAAC-AGATAAATGCCCCTGCT------TGGCTCTCCCCTTCCCTGCGCTGCAAGTGCTC-ATCTCTCCCCTCTCCACCG-AGGCCTCAGGACCGCGCCACAGGTGTTGCTCTATTTAGCGTATTTTTCTATCAGGCC----TCTG--TGAATACGGGACCTCTGCAGTGTTTGACATGAGTCCATGG-CTAAATTGATAATGAGCCTGTCGAGACAAACCGGCCAGCATTTGTTTTAGCCAGGCCAAAGGAGGTCAGCAAAATGCCAATCGCAGCCACAGTGGTGAACCCAGCTGCTGAGCACGGACA--GCCCCGGATTAATGAAATCGCAGGAGCTCAGCTTGTACCCAGGGACGAAAGCAGCTTTGAAAAAGGCATATGGC----------AAGGGAAAAAAAGCCAAAGTTAATCGCAAAGTCAGGCGTCCAATAAAGCAGCAGCTGCTTGAGAAGGAAAGCACAACCGCCGCTGCGTAGCGATTTCAGCTCCGCTGTTCCTGCTCCGTGGAGCAGG-GCACGCGCAGAGCCGGATTAGCTCCGCG------CAC------GCCAGG-GCGCAGGGTGCAGGGCACAGGGCCCG-GGCCAGGCGGATGAGC--GCCCTCTCCAGCCAGCTGTGG-GCTGATTACGGGCGGCGGCAGCCAAGGGAGCCCT--GGCCCGGGT--ACCCCAGCCCTTTCTCAGGCGCCCCGCAAAAGCC-TTTCCACGC-GTTGAGCCTCTCCTGCCCATCC-AGCCGCGGTGCGCGGG-----------------CCCGGGCGCGCGACCTCATTCAAAGCGCTCTGGTAGGAAGGCAGCCGCCTG-GTTGCTTCTCCACATTTAAGGACG-GTGCCCCTTGGCCACTTGTTTCCAGAGTCTGTCATAATTGTCACGAAGAGCTGTGAGGTCCAGAGCTTTGTTAACACTCCTACTGGCCTCCCAAAGACACCAGAAGAGGCGGGAGGGTGAGGGGCTGTCACAGA--CTTGCTGACCTGCCTGGAATTCACTTGCAAGGTT-GTCCTAGAC-CTTGACCATGG--TGAGAGTCTTGGCGCGCTCTC----AAACTG---------------GGCTGCGTCTTCTGAGAGGTGTTGCAGGAACACTGGCTGGCTGGAAATGGTATCATTGGGTAAGTAGATCCCCAAGTCAACTTGGATTTGAGAAACACTGGCTTTCATAAAGTTTCTTTGTATTGTTGAAAGCATTTTCAGTGTAAGT--------GGCTTAAAATCTGTAAGATGGCTGATGTGTCTCATGGATATGCATCATAAATAG--TTTGCAAAACTCCCctttttccctttgcagagggGCTTAA-caacattttttgaaaagtatttgaTACAGGTTGAATTATATCTCCCAGCATTCATATAGCAGGACTTAACTCTCCTGTACTTCAAAACTTGGT--CTTTGAAAACCGCGACCTTGCAAAAATAATCAGTTAAGTAGTAATACTAAGTTGAGTAGGCTAAACTCTTAATGCAATAGCCCAGGTATCCTTATA-AAAGGGGAAGATTTGAACCGAGTGACACACATGCAAGGAGAATGCCACTGGAAGTCTGGTGTAATTGT---CACAGGCAAGGGAACCACCAGAAGCTAGGAGAAAACCTT---------CAAAAAGAGCACAA--CCTAAGATTTCCTGC-TCTTGGGCTTGTAGTCCCCAGAACTGGGACAAAATCGATACCCACTGTTTAAGCCATTGGTTTGTGGTGGTTTGTCCTGGCCGCTCCAGGAAGCTAATCATTCTCAAGGGAACACTGTCCAGGAACACAGGCTGCTTACCAGGTCTCCAGGAGAACAGTTCCAGCAGTCTGAGAACACACTCCCTGCAGTTTAAAATTCTGAGACGTTTAAGGTTCAATTATGATTTTTTGTACACTTCTGGGGAGAGTTAATTCTGACAGTgttggttttagtttgcattaaaaaaaaa

a score=18083
s chr3           153108720 2386 + 160039680 TGAGGTTCAGCTGATACACTGTAACAGTCCAACAAGGACAGTTATCTGCTGGTTCTGTGGTTTCTGACATGGTTCTGGACTACTCTCAGGGAGCCTGGGTAGTGGCAGGTACTATGGCTGCCACT-------TGACACAGGCTGTGGAGCACTGGGTTACTGT--CAGCCCATACTACCACCCTCTCAGGCAATG-ATCCCAGATCCCAGAACACTGGTGGTTATCAGAGCAATGTCCAGAAGTGGGGAGTTCCACATCCTACTTGGCATGGTGAGAAAGGTGCATCCTTAGTCTCTCCATTGACAGGCATCATGTTTTCAT----GGGATCTTGCTGGGACCAGAGCATCAA-GCCTCCTCGGCTTTGTCTGTAGATGCTTTGTGATTCTAAGC---ATGTAGGCTGGA------CCTAGAGTGCATCTGGTTCA---GCCCTCTGTCACCTGA--------TCTATTTTAAAGAGCTGCATCTGTAAGCTCTCAGGACACTGAGAAGTGCATGTGGACAC-TGCAATATTGGCAGAGCATCATACAAATAGCATC----TGTATCAGGAACAATTGTGTATAGATACCACCCAAACATCTTTAAATGGC-ACACCATGGTGAAAGTTGTGACCTG----TGGAAACTGTAAAGTTTTCAGTGAAAAAGCTCATTGTCATTGGCCATTTCTCATCACTGGCTTTAAAGCTGGAGACATAATACAGA-CAGGAACCACAGGGCTCTTGGATGTGAACTCACATGGCTCTATGACATCGTCAGTGTCCTTTCATGTCAAGGAA--CTGGCAGGCATTGCTCATTGCTGATGAAACAAG--TCACATTTGTATTGGC-ATTCCATT--GCTATA---------ACTGAGACTTGACTGGTTCATA--AAATGGGTTTT----TCCTGGTGTGATCTGGTTTGGAGGTGGATCTGCTTAATCAATGGGATGACTTCAAGAAGTCATGTACAATCCAGACTCC-CCTGCCCTTCTGCTTCTTAC---CCTAGTGTCTGA----CTCCCTTAGGCTG-TGATTAGTAGCTTCCCTTCTGGGCATTGCATCCA--TCCAAGAAGAA-AGGGAGTGCACTGGGGCAGTTGGAAGCAAATGCAGTGTGATTGAATGGTATCATGTGAATCTTCCATTTCCCATCAGGACGGACAGGAATTTTTCTTAGACATTTTCTTATttttgtttagatttttgtaacaagatcttgctagatagaccagaatagcctggcgcatgtggcccttctctctgaacttttcagttcctggataaagtcagtgttccacctctatacctgactAGTTTTCCTAAATTCTGAGTCAAGCATATTTCATGTCTTCGGCCAGAATAAGAGAATTTGGC--CACTGGTTCTATTAATAAGAATGTGAGAATTTGTTTTAGGTTAGAAAACTGGTATCCTGTCCCCCCTCCCCAGGCTATAACATATAAGATACAATCTCCTCCCAAGTTCATTATGTCTTTTGTTACTTCAG-TGATTCATTAGAGAGGCTATTTTTAAACCCTTGATATATAAAGCAGATATGACCAGCTTGGGGCTGA----CTATTGATGGTACAG--CCATTGGATAGAAATTTGGCCTTGGTTTCAGAGGCTTTCTTTGGCTTTGTCCTCTACCACCCTATGAATTGTGATAAGTGACAGGAAGAGCAGAAGGAAAGGGCCGGATTTTTTTTTTCTCACGC---ACCTCTCCACCTCCAAAGACATAATGCATCCCATACAGGAAGAGCCCAAAGGAG-ATCTTTGCCGATGTGTGACGTGTGCCAACAGTCATGGGTCTGGGATCCAGCACTGT---------GCTG-----ACTTGAG-----GATTTAACCTTCTTATGTTTG-TTTGTTCCTTTCTCTAATATGTTGGCAGTTTTTGTGCAAATGCATCTCACGGGGCCTCAATGAAGGTTTAGTAAGAAGATATATGATAAATATTTCTAGTCCGGAGGAGGTATTTACAATTTACATGCTATTTTCAGTTTCATTATCTTCTCTAACCCAGTTCCCATCTG-TACAGCC----CCACTCCTGACCTTTGCTTCAGTGATAGCACACATCATTCATTAAGCCCACCTCCAGGAGATGGATGATGGAAACTCTGCAATTCATAATTGACCTAAGCTTACGCAAATGATGTGTGGAAAAGCTTGATGGCT-------CTGAAATAACAGGCATGCA---AGCCTTCTTTATTTATATTCTCCACTTTGTTCCC---AAAAAGTGTTTAAGGAGGTGAGGAACCTGCATTGTTTTAATCTATATACTTTGAGAAACACATGCATGCCATCG-TTATAGATGGTTTAAAGATAAATGT---GTTTCGATTCCCAGAGGAAATGTTTGTGAGCTCTCTGAAGGCTTTTAAAGATTGGGAAGTGAAAGGAAT------GGAAATAACGTAAAGTATGCAAA--------------GTTAAACAAGGGAAGGTTTCAAACTCTAAAATGg
s HiC_scaffold_1 139940524 2157 + 233722169 taaatttcagttgATGAAACCTGA-AGCCCAA----------TCTCTGCTTGTCTTACTAATTCTGGCAAAGGTCAATACTGCGCTCAGTAGCCCTGAGTGGAGGTGCAAGCTATGGCTGACTCTGCAGCAGCCACTCAGCCAGCAGA-CACTCAGCTCCTGTACCAGTTGGGACCACT---------GACAAAGTGTTGCAGCTCTCAGAGGATCTGTGGCCATCA-------------------------CCAT---CTGCCCTGAGTGGCGAGAAATTCAAAGCTTTAATCTCTTCTCTGAGAGGATCTCTGTTCTCATCTATTGGATCTCAGCAGGACTAAGACATGAACGCCTGCTCATGTTTGCATCCAGATG--GTGTGAATCTATACTTCCTGTAAACAGACAGATCTCCTCGGAGACAGCCTGTCCGCATGCCCATCATCATGCTACATATGCGTCTGGTTTTAGGCATTGTGTTTCCTGTATCTCAT-ATACCTTTAAATGAGTGCAGTCATGTGTCACATCAGTGCAGCACTACACGAACAGGATGGAGGCACACAGGGAACAACTTTGTATAGACATCAATGAACC--CGTGAGAGAGCTACTCTATTCCTAAAATTATGATCTACCAATAGAAATTTCTGAGTTCTCAGTTGAGAA-CTCG--GTCACAAATTATT-CTCATTAACAGCATCCAAAAT----ACAtagtacaaaacaaaagccaaag---tTCAGGATCAG-------------TTGTGAGGTTTGCAATGTTCTTTT-TGTCAGAGAATGCTGGTTTGCACCTTTCGTTACTGATAAAACCAGGATTGCATTTATATTGGTGATTATATTCAGCTATATGTCACAGAAATACAACTTCAGTGTTTGAAAGGAATCgggttttatttttctactgtacTGAAGTGTGGGGATC-ATAGGCTAGTGTCACAGAGACACTCCATGATGTCATGGAGTACCCAAACTCTGCCTACCTTTCCACTG-TGACATACCTAGGGCCTGGTTTTCTTCCTTATGCTGATAGATGGGTTTTTCTCCTCTAGCCATCATATctaattccaagaaaaacaggTGGTGAGGTGAAGTGATTAAGGATAGACAAAGGGTAAAAGAGACCCGCTGGCTGAGTCTGTCTTTTTTTAT----ATGAAAAGCaat----------cattttc---------------------------------------------------------------------------ctaaactcttga----ctgaataaatt------------tttat------------------------------------tttcatatctttagTCAG------------TGACTTCATTGACTCTGTT--------TGTGAGAAAT------------GGAAGGGGGT--------------------------------------------------------------------GGTGCTCCAGATGAGCCATTGCAGaagttattttgaatttct--attaAACAAACAGATA------GCTGGACTCTGAAAAACTTTTGTTGGTGCTGTGCTGTTGT---GAAATGAGTTATAGATCTCAAAGACCTTATTTAGTCTTCTTCTCTATTAGACTAAGAGCTCTGG-GAGTGGTAGGGAGGTCAGTGGACAGGGGAgggtctttatttttctctttttaaatttttcc-----cacgCATGTACTGCATTGTACTCAGTAAGATCTCAGAAGAGCATAGTTAGTGAAGGCTGA-GTGTGTAAGCCA--GTAGACCTGGGATTTGGGACTGTCCCTGGTTGGCTGTAAGAGCTTGAGCATGTGATGTGAACTTTGCACGTCTGCTTTTTTCCTGTGTCTGGAAAGGTGACAACATATGTGCAAGTGTGTCTCAGGAGGCTGTAGAGAAGGTCAAGTAAGATGACATATGATAAATATTTCTGGCATGGTGTAGGCATTTACAATTTGCAAAGTGGTTTCCGTTCTGTTGTTCCTCTTGACATTTTTGTCCTTTGACTCAGCCAGTGCCACGCC-AATCTGTGGTGGAGTGACACCA-----GGTTCACTAAATTCACTTC-------TGTATAA--------------------------CCAAGCTCGCCCACATTTTAAGTGATGAAGCTTGATATTTaagtttgaagaaataaataGTGTGTAGTGAGCCTTCCTTACTTATAACATGCATTTTTTCCCCCCAGAAAAGTAGTTAAGGGTGTGAGGAATCATTGTTACATTAGTCTGGATATTCTGAGAAACACATACCTGCAGTAGTTTATAGAGAACTCAAAGGATAAAGTACCATTTGGACCCTTGAGGGGAAGGTTGGAAGTCTTTGTGAAGGATTTTGAGAATATAGAGGAACCAGGAAtatagggggaaaaaaactaaACACCAAAAATTTGCCACAATCTTGTTAAGTAGTGAC---TTTGAAACTCTAAGATGG

a score=12137
s chr3           153114235 712 + 160039680 GTGTGTTCTTCTCAACCTTCCAAAGACTCGGGAGAGAAGTTT----TGGTTTAA-ATTTGGAACATACCTGGTAGA-CTCTGAGTATGAGATCCCTGGGTGTATGTAAGATATATTGCTGGCAAAATAACTAGTTTAATC----------AATAAAATTGATAAAATCATGAATTATATACTCTAGCTATGCTTCTCCCTAACATATACTTTTTAAAAAATGCACGGTTGTTGCTGTTAAA--TGTTAAGTGCTA-------CCACT---------------GTAAGTCTAGTACCCTTTGGAAAACAT-CTTGCTGTGACATC--TTGCTGTTGTGCTTTGGACCTTACCCCACCTGTGATCCTTTCCTTAGGTGGACTAAAGGCTGTAATAGATAATTTACAACCCAAACAAAGATGTGTGAGCTCATGTGTGAAGTGGGCATACTACTGATA------CGGGAACTACAGGTATAAAACC--ACCATCTTAG---AAACTGGGCATCTGGCTCCTCTATTCATCTGATCACTTCCTTATTAGCACTTCAAAGACATGAGAAACACTTGTG-----TATTTTTAGGTTTTTGTATACACCATATGACT--AAGCCTTAGAAAATTCGACCATCATGTTCTGGGGGGCCTGGAAGCCCTTTATTAATTTTCTTCTCATGTCTAACTCC-TACATTA--TACTTTAGGAGGTCTTTTCAGACTTCAGCCTGTACCAGAGAGCCATTCTCAGAATCTCCTGAGGATTCTAACCATGT
s HiC_scaffold_1 139944205 758 + 233722169 GTGTTTGCTTTGCAAATTTCCAAAGAATTGTAAGAGAAGTTTCAGTTGGTTCAAGATTTTCAACATTCCTGTCAGAGCACTGGGGATGAAGTTCTGGGGTCAATATTGGACACAACACCAGACTGGTAGCTCTTTGAGTCCATCCAAGGCAATTAAACCAATTAAATCCTGAGCTGGATGTGCT------GTTTCTTCCCAG--TATACATTAAGAAATATACATAACTATTGATATGAAAAATGTTATGTGTTAGCTAAAATCACTTTCCCTCTATAAGTGGTAAATACAGCATACACTGGGGGAAATTCTTAGTATGCCATAAGCAGCT-CTGTGATTTGGTCTTTATTTCACTGGATAATTTCACCTGAGGGTGTTTGTAGTTTG-GTTACATGAATTGCGACC--ATTGACAAGATAACACTTCTAGTACGAAGTGGG-GTGCTCTTGGTAACTTAGCTGGGACACCAGATGTAAAACTGTACCGTGTCAGGGAAACCTGGGCATCCAGTTCCCCTATTCATCGGCTCTCTCCCTGATAATCACTTTAAAGACTTGAGTAATacttaagtttgttttttttttttttttgtatcaaccATATGATTTCAAGTCT--GAGTGTTGGCATACCTTGTTCT-TTCTACCTGGAAACCCTTTAGTATCTTTCTTCTGATACCTGACCCTATGAATTAGCTTATTCAGGAAGCTTTTATAAATTCCAGAAT-TATCAAATGATTGTTC-CTGTCTTTCTTGAGAATtctaaaaatat

a score=13618
s chr3           153120635 1636 + 160039680 GCTGAGACCATGCAG-----------------CCTGGGTTTGGGGCAAATTAAAAATAGATTTGTTCCAGAGACTCTGAGTACCT--CTGGCAT------ACATTGGCAGTGCTAGGCACTCTGATGCCAGCCTAGGCGTTGTCCATCAGGATCCTGGAGGTGTCGGGAGGAAGGGAGCTTGATTAAGTAGGGCACTTGGTACTGTCAGTCATTTGCAGT---GGTtgtttccaagcacagatggagctaggtgctccatccctgttcatctgggctctctcttctatgcttgctttcttgatcaatggcttcagctg--tgctggcttcagttccttacaa---ttctctctctggtggaagtcttcaggcccaagcttacctctcagcactctaggaaccaagtagaaagaactgcccttttttcaagaattctcaggaaTTGCAGTGGTCCATGAATCCCAGAGCCAGTCACAGTAGCCAGTGAGACGTGTGT--------------GCT-------------------GGGGAGGACACATGGACCCCTTTTCAGCCCT----------------TCGGGCAAAGTAAACTGACTTCCTAAAAGAAATTGGTAGGTTGTGGTTTAAAATGGCAAGAATACTCTTGCTAATTGAACAATG---TCCATAAGTCAGGAGGCTAAGCCTGTGTTGCATGTGGTATCTAATTTTAATCTTCACAAAGAATGTTAAGGAC-----ATTATCAGTGTTGTTTCTACTTGACTCTAGCTCTGGAAACTTGTCTGAATCATCgcattagtttttctccttgtggctctgacaaagtacctggaagaagcagcttaaggaaggggggtgtggctcacagcatgacggtgacaggtatcatggtgggaaagccatggtgggcagctggtctggaagcagaggcagatgaatgctgaagcttagttggctttttccttttgcttccatcagggattccagcctagggaatggcgccacccacatgtgggctagatcttcctgtgtaaacttgcctaacctagaaaccctgcaagacgagctcagaggcctgtttccatgatcattctaaataccatcaagcagacagtccaggttaccagtcaGAATCCTGGCAGTCTTCTGTGGCTTGTCAAGGATAGAGTGGGGTATTGTATGAGGACTAAGTGCATTGTGGGAACCAGGGAGTAGGAGAAAAGTATCAGGGAGGGGCCCAGGCAGAGCCAGATGGAGGCAGATAAGAGATGTGGGGCCAACGTCTGGGCAGGACCACAGCATCTGGATAAAGGGGGAAACACCATGAATCAGTGGAGAGTGCAGTTAGTGTCAGAGGGCAGAGCAGGACCAGGCATTCTCAGAAGAGCAAG-CAAAGACAGCGCCATCCCAAACTCGGAAAACTTGGAATACAGAAGTCAGTGAGGTTTGTAGAGTC-----------AGATATAGCTGTCACGATCGTTTACTCCC-CTGTA--CAAGTTAGAGCTGAGGATGTACGAATGTTGCCG-----AGAATTCAGGTCACATGTCTTCTTGATGCCTCGCTGACATGTCTGTGGAAGCAAACAAACATTTCCCATCTGCTTTTTGGTTTCATTCTGTGGATCAGGATTA--CTGTTTCCAGACCCCTCCCTTCCCTGGCACGGGCAGAGCTGTGTGTAATTATGTTCTACTTGAGTAGAAAACA----GTCAAAATTCCAGCTTCAGCC
s HiC_scaffold_1 139949891 1338 + 233722169 gctggggacatgCAGGTCCAGGCCCTGGCTCACCTTGCCTTGGAGTGACTTAGCAACAAGTTAGTTCTAAAGATACTGAACACTTGTTTTGCATTATTCAAAATTAATAGCACAGGGCATCGCCATGGAATGGCAGTCTTTGCCCATTAGTATGCTGGATA-GCTGGGAGGAGGGGAGCTTGGTTCATTAGGACTCTTTCTATGGCCAGGTATTTGGAGTTTTGACTATTTTCAGACCCTTAAAATATCAGGTGTTGCAAGCCTAT-AATCTGGActctct----------tgctctctttctcAATGATTTCAGCTGATTTTTTACTTCATTTCCAGCAAAAGTTTCTCTTTCTGCTGGCAGTCAACAGTCCCAACCTCACATCTTACCACTCAGAACACCTAGTGGAAAGAACTTCCCCTTTCCGGTAGTCCCCCATAAATAGCAAGGATGCACCCGTCCTTAAGCCAATCACTGTAGCCAGTGGGACACATGTTTCCATTTGATGTGGCTTGTCATGTACCCTAAAAAAAGGGGGTACATGAGGGTTTTCTATCAGACCCATCTAAGCCAACACACTAAAGCAGAGAAAATCAGTTTGCTAAAAT-------TGTGTTATGATAAAAAATAGTTGTAAT---CACATTTATTGAATAATAAGATTCATAAATCATGGTATGAAA--TGTTTTATGTGCATTATCTAAC---AATTTTCACAGAGCCTAGTGAAGACTTCCGATTAT--------TCTCTTGTTG-CTCAAGCACTGA------GGTTAAATCAT--------------TCCTCG-GGCT--------------------------------------GATGTGACT------------GTAACAGGTAGGTTGTGGGGGAAATAATGA----------GCCAGGAGCCAgggcacagtgcaccctg----------------------------------ggga--caGGACGGGGGAATGGAGTCA---------------------------------------------------TGCTAGAAGAACCCAGTGA-------------------------------------------GGGTCACCAG------------------------------------------GAGAGGCTGGACAAGGTTGAGGCACATTCT---------------------CAGTGTCATGGAGGGA--------------------------------GTGTGGA------------------------------------------------------CAGTGGCCAGC------AGTGACAGAAAACAAGTCAT--TCAGGC----TGGGAAGGGAGTGTCAAAGATAAACCCACCC--AACTCCAAGACTTTG---TATAAGCATCGATGGACTTCATGAGGCCTTGCTGAGCTAAGCTATTGTTGTCATGGTCATGTACTCCCTCTGTAAGCAAGTTAGAGCCAAGTG-GCACAAACATGGAAGGAGAGAGAATTTGAATCGTGTGTCCTATTTGTACCTCACTGACAAGTTTATGGAAGCAGTCATACATTTCCCACCTGCTTTTCAATTTCACTCCATGAATCTGCATTCTTTTATTTACAGACCTACCCGTCTCCCTCATGGGGCAAAATTGTGTATAATTATGCTGAACTTGAGTTGGAGACATGTGATTATGATTCCAACCTCAGTC

a score=40481
s chr3           153122690 1418 + 160039680 GGCTGTGGAATGAGAAGGTTACAGGAAACTGTCTGTCCTTGTGGTCCTTGGGTGGGCAGGAACAGGGAGCCTTTGCTCCCATGCAGATAGAAACCCTTTGGAGCAAAAGTCCTCAGAGCTCT-GATTGTTGAGTACTGCTAGGCTTATCAACTTTTAGCTTCACAGCCTGGAGACAGGCCCCTCCTCTGGAGATAGGCTCCTCCCCTAGAGACAGACCCTTCCCTTGGAGACAAGAACTTCAAGTCTGTGTAGGTTTCCCTCTCCTTATTTGCCCTCAATTGATCATAACAGCAGCAATCAAATCCACTTCACCTTAATAAAAATGAACCGGAGAGACTCGTTCTGTATATCCCAACACCACTTGTCCAAGTGCTGATTATTGATCTGAAAATAGCCGGTGCTTCAGCCTGGTAATA-TTAGCTCATTTCCCCCACTTCAGGTTTCAGTCACAGCCAC-GTTGCCTACTCTGGAATTGCCCTAGCAGAACGAGATGATAGTGGACAGGCCAGAAAATCTCTCCTGGGTCAACAATTCATCATGATGGAAATTGCAGACGCTCAAGTATGTTCTGCGAGCAGTTAACAACCCAGGCGTTTCTCTCCAGTCCGTCACATGCCATGGGCTCACAG---ACTCTCATTGTTAAATTCAATTTCTTCAGTATGCCTGGTAATTATGGTATTGAGCGATTGATTTTGCATAACCGCATGACCTAGGCTGATTCGGATGTCATTACTGTGACAGGG-GCATAACTGTGGTTGCAGCTGATGGGCACAGACCCTGAGAGAACTGCCAAGGAAGAAGATG-TTAAAGTTGTCTCAT---TCTTCTGGGGAAGCCATTTTGCAGATCCTT-------ATGAACACTATAGGTATCTTGGAA--------------GTACGAGGGCCATGGCTACTTTCACTGTTGCT---CAATTTCCGTGCTCCCCAAATCATAATGTTTATTGGCAGGCAAGGTCACTGTGCAGAGG------------GAGCCTTTTTAAGGCAGAGATTTTAAGCTCTGTGTT----CTTTTATTTTACATTGGACAATAAATCCTGTCATATTCTGCTCTACTATatcctattctattccattccatctcattctattccattccattctattccatcccattctattccattccattccgttccattccgttccgttccgttccgttccgtcccgtcccgtcccgtcccgtcccatcccatcccatcctatcccattccaacccattccatcccattccattcGTGTTTTCTTGAATGCCTAAGCATTTGGAACTCTCTGCTAGGAGATGCATGCTCTTGTGATTTGTGTATACCTTGTCCCTGTTGGTGTTTGAAAGTGCCAC-AGTGTGTTTCCTGGGGTAGGGATTTCATTGTCAGCAAGAGTTCTGCTCAGAGAGCCATGCATGGTATCATGGTGTGTTACTGTGTCCTC
s HiC_scaffold_1 139951272 1216 + 233722169 GGTTATGGACCGAGGAATTGACAGAGAACTTTCTGTACTTGTGA------AGCGAAGAGAACCATACACTATTTTCTTTGCTGC------------TATGGTGAAAGATTCTCCAGgactccagagtgctgagagagACTAGGGCTG--ATGTGATGGATTCCCAGC----------------------------------TGCCCTGGAGAGgagccctcctttt-------------tc---tctgggtAGGCATCTCTTTCCTTATTTGCTGTCAGTTGATCATACCAGCTGCAATAAAATCCACTTTGCCTTAATAAAAATGACCCAGAGAGAGTCGTTCTATGTATTCCAGCATCACTTGCACAAGTGCTGATTATTGATCTGAAAACAGAT-GCGCCTTAGCCTGGTCATGTTTAGCTTCCTTCTCCCACTTTGGGTTTCAGGAATAGCCGCAGTTGCCTACTCCGGAATCACCCTAGCAGAACGCTATGAGAGCAGACAGGCCAGGAAATCTCTCCTGAGTCTACAATTCATCATAATGAAAATTGCAGGGGCCCAAGTGTGTTC-GCCAACAGTTAACAACTCATGCTTTTCTCCCTGGTATGTCATATGCATCAGGCTTGCCGAGAACTCTCATTGTTAAATTCAATGTCTTCAGCATGGCTGCTAATTATGGTATTGAACAATTGATTTTGCATAACCATAGAGTCAAAGCTGATTTGACTGTCATTatcaagaaagggaaaatgacaGTGGTTGCAGCTGGGTACCAAGGTCCTTGATAGAACTGTTAAGGAAGCTGAAACTCAAAAGCATCTAATTCATCTTCCACTTGAGCTGCTTTGCCAGTTCTTCATTGTGAAGGGAGAAGTAGATATCTTGGGAACGACAACAAAATGACATCAGGGCCACGGTGACCTTTGCTTTTATTCTGCGGTTTCCATCCTCTTCAAATCACAAAGTTTACTGGCTGACGAGGTCATTTTGCCAAGGGCACGGAGCTCAGAGTTGTTCCAAGGCAGGTACATCAAGCTGTGCATTCTGCCTCTTATTTTATTGTGGAAAATAAACCCTGTAATATTCTTTTCTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAGAGGTTTATTGAGTGCCTGCGTGCTTTGAGAGTTCTGCTAGG-GCTGTGGGTTTATGTGATTTGTGTacaccttgtttctgtttgtgaTTCAAAGTACCACTAGGATGTTTCCTGGGGTAGGCATTTCACTGTCAGCTAGTTTCCTGCTC----CACTCTGT-TGCTGTCATAGTGTGCTATTGGGTCATC

a score=23244
s chr3           153127669 1948 + 160039680 TCTAtattagaactatactttttgagttt-atgctgtgaggtgctgaattttgctgcattccttcaagtgttagtgggctttattcctggatgtagtaaaataacttgg-attaagcttctttaaggctt---aattttacattttgGGAACACACAGAACTGTCCTGGGTTGGGGATGGCCATGATGCAGAGATGCCACCCTTATGGATGCCAACCCCTGCCCGTTTCATGTTCTCTCTCGGCTTTCCC--------------------TCCTTTTGGCTTTCCGCTAGGCCCCCTGGGAGCTCTGAGTTGTCTTCTGTCTTCCTC-TCTCGGCAGGGGCTGCAGATTAGGAATGTGTGCTCTCCTGCAGGTGTGCTT--CCTCTGCAGCAGGTGT---GCTTCCTCTGCAGTCCAGGTCTGGGGAGCCCTCTTCAAACGGTGTGAAAGCATCTTTGTGCTGTTGTCTCATCTCTGTTGTTCAGGTCGACACATCCTTGCTATTTGGAATCTCTAAG-------------CTATAAAATATCTCTTCTCCA-CCTAGCAAACCTAAGGATGGAGTTCGCTTCTCTGTGTCTGGACAGAGGCCTAAAAATTCACCT----GAAAGATGGGAGAAATTCTCAGACACGCCTCGTTCATCTGCTTTGTTTGTTGTTTTAGTTTTTGGCAGCACCAACTT------------AAACTGTCCA--TTGCCTGTGGCTGAGAAACAGATAATC-ACCTGCTCCATCTGACTTTCTAGTTATTCA----------GTTGCTCGAGTCACTGATTCTCCTTCCAGGCCAAAAGCAGAACCCTCCAGGGAAACTCATTAGCATAGATGTG-ACCCCTCTGGCTTTATTGGTCCTTTGGTCAGCCATTT---------CTCATACCTTCCTTCTGCTTGGATACATTTTAACTTCTCTCAAGTGTTTTCTGGTAGATGTGGTCATGAGGAGG--TGCTTTTAAAATCTCTGCATGCCAAAAATTATCCCATGTTTCTTTCATTTTTTGGCTTAGCAagacagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatggatagaAGTAGATGATC--TACACATATCATTCTAATTCTTCCATGAACCTTGTATTTCATGTATTTTTGTTGttgttgttttcgagacagggtttctctgtgtagccttggctgtcctggaactcactctgtagaccaggctgacctcgaactcagaaatctgcctgcctctacctcctgagtgctggcatttaaggtgtgcgccaccactgcccggttCATGTAATATTTTTAATGGCCATGTGCTGACAGCCTG-CTTTACATCCTTA-AAGCATTTAGAGATTT-TGTGTATCTCAAAACTCAGGAATGCATCTATTTCACAAACCAAATC-CAGTTGTTTTAATGAGAGGGGAATGGAGACATTTG--TTTAAAATCTAGTACTAAGGA--------AAACCCATGAAAAGCAG-------CCACCTG----------------CTTGCCTGCTCA------TTCTCTCCTGCCCTGGGCTTGCCTTCATTCCTGTTATTTCCATTTGTGTCTTCTGTA-TATTTTGAACTTCCTCAGACA----------GCTTTTGTCT-ACTGTTGTGAGACACGAAGCCCTGGGGTATAAGCCTGGGTTACTTGTT-----AGCTATCATTTCTGTTCTCCACAGACACTGATTCAAAGTTTTATTTTCCTCATAAATAACTCTGGTTGTCAGACAG-----------TCATAGATATTCATAATTCAGTATATAAATGTTCTGAAATTGGATATCAAC-TTATAGTTAGGTCACAA---------------------------AGTTCCAAAGTGGGGGTGCCATAGACGCCCTGAAAAATGCCATTGGCTGTACGAATTCATTCAGGGTTTCAGT----------GAGAGACATTGTC-GCTGATGATAGGCCAAGGGGGGCACT-TGATGGTCATTTCCACTGTGTAAATTGTTCTCAAATTATATAATGTCATGCAAACTGCAGGCATCTTCTAGAAGGCCA-----GTTGATTACAATCAGTCAAAGGAGTATTAT
s HiC_scaffold_1 139956875 1813 + 233722169 tttttattagaactagacattttgaatttcatcatGTCCCGTGATGGATTTTGCtatatttccttaaatattattGGGTTTTGT-ATTAGATACAGTAACATTACTTGGCATTAAGTTTTTC----GCTTTGTGACTTTAGATCT-----------AGTGTGGTCTTTAGTTGAGG-TAACTGTCTCCCCGAGTGACCTCTCCAATG---------------CCATTACGTCTTGGTGCTC--CTTCCCCCAAGGTGGTTGAAACACAGCTATTCTTGGTACTCTACT------CCTAGAAG----GAGTCTTTGTGTGTCcctctcatctctgc-----------------------tattcttcTCCACAAATTCTTGCCATTTGAATTATGCATTAAATTGTCTCTAAATTCTAAAACATGta------ccccaggggctggggatttagctcagcggcataagcgccttccttgcaagcaggcagtcatgagttcgatccctggtaccgataaaaaacaaaacaaaacaaaaaaacatgtatCCCCCAATTTAGAAAAATGGGTGAgacattttgcttctttttgtccAAACTGAGGCCTGGAAACCAACCCTAAGAAAATACTTGGAAAATCGTAAGAcac--------------------------ctaaaaacaacaacaacaacaacttttAACTAGAACTAACCTGCACAACTGGCCAATAGCTGA-AAACCgatattttatgtattctgtctGGATTTCCAGTTATTTAAAGTAAGATTGTTATTCCAGTCTCTGATATGCAATCATGGCTTCA--CAATACCTTC-----------ATTAACATAGATGTCCACAGCCCTAGTTTTATTGGTTCTTTGGCCAACACTTTTTCTATTATCCCATGCCTTCCTTCTGTTTGGATCTATTTTAATTTCACTGAAGTGCATTCTGTCAGAAGTGGTTCTGGAGAGATTTGCTTTCCAAATCCTTGCATGTCTAAAACGATTCCGGCTTTCCTTCCTTTGTAGGCTTGGTGA-----ACAAATCTGT-------------------------------------------------GTTCGAAATAGATACACCTTGAAGACATCGCTCTATTGTTTTCAAGAATCTAGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGCATAAGATTTCTGATAGCAGTTGGCTGACAGGCTGTTTTTACCTCTTTAGGAGCATtgagaattttctgtttttcttggaaCTCAGAAGTACATGTGGTCTATGAAGCAAAGCACAATTGTTTTGATGGGAGAAGGATGGGGAACTTTATTTTTACAATCTGGCATTatggagtaaaaagaaaactgcagagaACTGTCTTTCCTCCCCTGTGGATCTTTCTGAATTCTTGCTTACACAGAGGTTTTCTCTGATGCCTTAGGCCTGCCTTGGTCCTTGTTATTCCCCCTT-CACTTCCTGTCTTACTCTGAACATCCTCATCCAACCCGATTAGGCTCTCTCCTGGCTTTTGTAGGGCATCAAGGCTTTGGAACAAAGCCTACATCACTTGTTTAGTAAACAGTCATTTCTATTGTGCTTAGAAAC---------ATCttattttccttataaaaaaTTAGAGTTGTCAGACAGTTAACTATAACTTAAAGGTTTCCACAGCTCAGTGCACAAATGTTCTGAAATTAGATATCAGCTTTACAGCCAGGtctgaaaggaaaaatgtttcagGTAGAAATCCCAGGTCTAAAATGTGGATGACATATACTTACTGGCAAATGTTATAGcctataaaaattaatttgaggCTTAAATAGACACAAAAGAATGATATTGGAGGGTGATAATGTATCAAAGGGAGCATTACAATGcccattttcattttgtgaatcATTCTCAAATTATGTTATGTCATCAAAGCTACAGCCTTCCTTTCGAAGGCCACAGTCATTGACTAAGAGCAGTTAAAATGGTTTtat

a score=23629
s chr3           153133339 606 + 160039680 ccggTTATGATTCAGTTGCCCCTTTTGTGCATTG------TTATAACAGCTGTACACATCtacaacccttctgaaagcaacatggaaactcgaggcaagagcagtggagatggccacaggc--tagcacaggaatgtcaccttgagga--atgtctccaaagacagtaattc-acaaaatcaggagatctgtatgcagggaagtgttcattagagcagctttataatatcaacaacaaaagtcacagagaaacaatatatgtctaa--cagttgtgaaactgtttagtaaattacagaacatttagtctatggaatattattcagtcattaaaattataattatgaaaatcacaaaagataaagaaaaatgtttatgctatgatgttaaaagcaaacagtggaattaaaatattatgtgcattatgattgcatctg-ttaaaaatGTGCTCGTGAGTGGAAAGAAAATGTGCAAAACTTTATACGGCTGTGTTGGCTTGGAAGGCTTTCGATAAGTTTC----TCCTTTTTCAAATTGTGCTTAGTAAACGATAGCTATATTCTT-ACAAAATACACTGGAAACAGAACTACCCACAGGAGATAAAAACATTAAACAATGAGGCA
s HiC_scaffold_1 139959621 618 + 233722169 CTGGGTACATTTAAATTGGCACTTTTCAACAGTGCCAATTTTCAATCAATTGAAAACCGCTATAGACCTCTCAAAAGCAATAAAGCAACACAAAGCAAGAACTGGAGGGAAGGTCCTGGGCCTTAGCTCAGCAGTGTTGCCATGGGGAGCATGCTTTCAAGGA--GTAATTCCACAGAAGCAGAAAATCTATAAGCAGGAAAATATTCATTATCCCAACTGAATAAAGGCTACAA-AAAACTCTCAGAGAGGCCAAATATGTAGAAAGCAGTTGTGAAATTATTTAgcaaattataaaacatt-agtctgtggagtattattcagccattaaaATTGTAATTATGAAGACCGTGGAAGATACGAAAAAATGTTTATACTCTGATGTTAAAGG-AAACAGTGGAATTGAAATATTATGCACGT-ATGATTGCATCTGATTAAGACTGTGCACGTGAGTGGAAAGACAATATGAAAAACTTTATGTGGTTCTGTGAGTTTGGAAAGCTTGAGGGTGATGTCCGCTTCCTTTGCAGAATTGTGTTTAGTAAATGTTAAATACATGTTTAATAAAATGCAATGAATAT-GGACGAGTCAAGGGAAACAAAAGCAGTAAAGAGTAAGGTA

a score=44210
s chr3           153137571 2251 + 160039680 cacatccacacacacacacaca--aacacacac--GACATCAAACACCTTGTGTTTCTCCAGGCATTTATTAGGTTGCTTTTGTGACATCTGAAGAGCACAATTCCTTCTGTGGCTTCCTGTTCCTCTCCAAGA-TCACCTTTGAAGAATGGACTACATCTGGGCAAAGTGTTTCTTCTAACAAAAACAAATTCACTTAGAATTGTCTAAATCTCCAAATCTCTCATTTCTACAAACGTGCACTTCTTT--TCTTTTAATAGAAAAGGACGTGAGAGTTACTGAAGTCA-------TTTTGTAAAAT--GCGGGGAC------------CCTTGGTCAGTTCCATAGCTTGTGCTCTGCATGGGTACAGATCTAAAACAAGAGGTTGTAGCAAGTTCTGCCACTCAGTGTGGCTTGCTCAATAAACACCCA----------------------------TGGTTGGAGTTCC-----CTCAAAGACTCAAGGAAGCTTTGCACTCGAGAGTGATGAGTCCGATG--------------TGCGC-----TGTCTTTGGTCCTGTCAACCCTCCCTGACATCCTAGGCCTAAGGAGAAAGCAAGCAGGAAGCTTACCCTCATGTATTCCTACTTCATGCCAAATCCATTCTAGAAACATGTGAGGACTTATTAGCTCATCTTAG---TCACTGAATGAAGTCTAATGACAGCCGCTCTCTGATCCACAAATCTTTTTGCTGCTTC-----TTTTTTGGTAGCAGCCCGTTTTCTGAAATATGTTGCCATCAAAAGATCAGCTGCTTAATGAGACAGGTAGGAAGCCTGTTTCCAAAGAGGTGGGTTCTTATCTCTTC-AGCATTTGCCAACGATTTCC-TAGCCATGC-AGTCACTTTCTTCCTGGGTGGCTCCTTTGACTTCATCAGGAAATG--CTGCTCTTTGTTAATCTCACAATATGGCTTTCTTATCGACCCTTTCTACCCCTTGCTTTCCCTTTTCCCATCTTGCCTATTGTGTTCTGGGGAGATGAGCAAAATAAGATGTATTTTACTGTATTGCCTTGAAAGAGAATGGTTGTCAAAATAACACCACTCC------TGTGTCCCTCTCTGAAGT-------------GCTTCACTGACAACAGCAAATGTTTGTTCTTGCTAAGGCTGCAAACCTGGCTCAGACGAGATG---CACAAGAAACATTACTTAGCTCTCATCAGCAGCCACCAAATTATATCTAAAGCCACCAAATTGTATCTATTCCTGTTATCAAAATGTAAAAGAAATACCCAGACATTTCATAGGCTTTTTTGATACTGTAGAGATTTGGGAATGGGTCATTTTGATACTTAGGGTATGACACATA--------CCCTGAGTTTGTCATAT-TTTTTTCTTTATAGGAAACTTATTGGTTCCAATAAACTATACATCAGGGTTAGGTCACTTTTGCAACTGTTTCCAGG---TGTTTTGTAGACAG-CTTACAAGTACGGAAATGTGACAATGGAAGAATCATTTCCTAGGTCATAGTTTCTCCTT-------GTGGCAAATGGTTCTCTCTACCTGTCTGTTCATGGAAGCATCTAGATTT-TAGAGATTTATCTATCATTTGCTGTTTTATGAATATGGCTATCCCCTTTCACTGTTTATAGCAATGTTCCCATTATAGAGATGATGAG---GAATCTCTGAGAGCAAATTCTGGACTCAGTTCTGGTCAGCTATGACTC---------------ATTTCCTGTGGCTTCAGATGCCTTCCCTGTAGAGTGAGACTCTT--AGGTAC-----TCATAGGAGGTCAATGGAGAGAAACACATCTAATCCCATACTTCAGGGGCAGGA-AGACACCAGACACTTCATAAATTTAGTAATTATTTTAATAACATCAGGATAGTGAACATAGGGGTAGATGTTTGTACAAAAATTATTATATAGGAAAGGAggtggtggtggtggtggtcgtgg--tgatagtggtggtg-gtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtggtgatggtATCTTTGAAACCATGAACTGTGTTAGGGAAAGGCTTCTATTGTATTTACCAAAGAAGAAAAGGGGGGCATCTACTTTAAAATAGAGGAGATTCCCCAAAGAACACAGAGCTAAAATGAGTTGGACAAAATTACGCTGCTAATCCAATGACTGTAAAAGTTATTTTCATCTTCAGAGGGAAATAAAAGCTAATGCAATAAATGGCGGAGAAGTAAAATAACCTTGAAAGTCCCTATTAACTGACAAGTGTGTGATTAGAAAAGTCTTTAAAAATGACTTGGGAACTAGATCAGAGCTTTAGGGTAATGTTTGAGTTCTGAAGGAC-ATGAGAGGTCTT
s HiC_scaffold_1 139967480 2220 + 233722169 CACTTCCCCAAACCTCCCCACCGCAACACACACTGGAAGCCAGACACCTTCCATCTCTTAAGGAGTTTCTCAGGTTACTTTCGTAACATTCGAGGTCTCCAAGTCCTCCTATGATTGCTGGGCTCTTTCCAGGACTGGACTTGGGAAACTGAATCATACgtggtttctgttttctttctcatggaaa--aattcagtttaaatt-------tttctaaatatcttatattta---acatgcatttttttggtcttttagaaAACAAAGATATGAATGAGATGTAAGTCAGCAATACTTCTATAGCGTAGGTGGGGACTTACATCAGTTCCCTTTCTTAGTTTCACCAATTATAATCTTCATAACTTTATAACTGTAATAAGTACTTCTA-TAAGCTCTgccatttaaaatagttta---aataaattACCACAATATTATCATAATGCCAATATTATATTGGTTAGTGGAACTAATGCCCAATGATCTAAAAAAG---TGCTTTTGAATATGCTAAGTACACTGGAGGTGATAGCTcttgcatatatttttctttagatatgtcgGTTCTCTATGATATCTCAAATCAAAAGAGAATTT-----GAAAGGATACTCTTTTCTTGAACTACTTTATACCAAATCCTTTCAGATAACTTCCAAGAATTGATTatctaattttatctttctttgaataaattccAGCGAGAGCCACTCTATGATTGACAGATCTTTT-GCTAATTCCTCTCTTTTTGGTTAGCGGTTCCTTTAT--AAAACTCTTGCCACAAAAAAATCACCTGCCTAATGATGCAGGTAGGAAACTTATTTTTAGGCACGTGGAtgcttgttttttctctctttctccaatTATCTCTGCAACCATTTTAGGCACATTCTCCCTGGGTGATTCTTTTGACTTCATCAGGTAATGTGCCTCTCTTTGTTCCTTACACAATATGGCTTGCTTATCGAAGCTACCTATGCTGGGctctttcttttcccatcttaGCTATTGTATTGTGAGCAGACAAGGAAAATTAGATGCATTT-ACTGTATTTCTTTGGAAGAAAATGCTTGTCAAAATAACACTATCTTGCTGTATGTATCTCTTCCTGAAGTCACACAACTGACTGCCTTATTGACAACAG--AATGTTCATTCTTCATGATGTTGAGAAGCCAGTAtaaccaaggaagaaaaaaagaagcatcaTTTAGTTTTCACCATTAACAATCAGA-------------CATAAAAT---------------------------ATAGGGATACTAAGATAGTTTGATGGGGTTTTCAATATGGTAGAGAATTGGGGATGGGGCCCTTTGGTAGAAACTGTATGACCTGTGTATGTGTTCCACATGttcatcacctgttttttcttcacAGGAAAGTTATTGGGATCAATAAACTATAAACTGCCACTAGGTCCATTTTATGGCTATTTCTTTGATCTGCTAAGTGAGCAGGCTTACT-GTGGGAGGAGCTGGCAGTGGGAGAAGTCTTTCGGGGGTCA--ATTTTTCCTTTCGATCTGTGACAAGTTGCTTTTCTCATCTGACTACCCAGGGAATGGC--AGATTTCTCAAGAGTTGTTTGACATTTACT----------TCCAGTTAATCTTCTTTGATGTTGACAGCAGCAGCCCCATTAT-GACAGGGTCAAATCGAAGCTGGGAATGCATGTTCTGGACTCAGTGGTTATTGGCTTAGACTTTgtgcaagttatttaacctctcatagtcttaatttctttatctgtaaaatgggaataatgaaTGTACCTACTTCAGTGAGAGTAAATG---AGAAA-ATTTATAAACTCATATAGTACAAGAAGGAGATGCAATAAATAGTCCACCACTGT--TAGCTATTACAGT----------CAATGAGCAGGCAAGTGGAGGGATGTATAATAGTAGTTATGTATCAA-------------------GGTCGTGGACTGATTTTTGTCACGTGTGGT------------------------------------------------------------------ATCATGAGCCCTGTTATTAGA--GTTCGTTTTGGGCTCACTAAAAAATGAGA--------TCTATTCTGAAATGTAGAAGGTTCTTGAATAAACATGGAGCTAAAATGAGTTGGATGCAATCCTAATATTAATTCATTGACTGTAGAAATTATTTTAGTCTTCAGAGAGAAATACAGGCTAATGCAATGAAAGGAAGTGAAATGAAATAACCCTGAGAACAATGACTAATTAATGAATAGATGattagaaaattcttttaaagcaCTTTGGGACCTAGATCAAAGCTTTTGGCAAATTGTTGAGTATTTGAGAACTATTAGATGTTTT

a score=64115
s chr3           153140514 1862 + 160039680 AAATGTATTTAAGAAAGAACTTAGTCTTTATCCTGAGACCCCACCAAAGCAAGCAAATATAACCCAAGCAAACGGAGTGCTCAGCTGTAAGCAGGAAGTT---AAATTCCATACCATCTCCCTCCCCACCTTTGTCTGCACACCTTCCTAAATAATACTATCCATCACAGCAGGCAGATGAGCTGA-CCCAGACTGCAGAAGGAGGCAGACCTAGAGATGAGAGGCCATCATAGGAGGGCTCTCAGTTATGATCATGA-GCACCGCAGGACATCACCCCATCAACACTGGCTGGGGGAGTTCTCATTTGATGAGAAAGCCACACAAA---GACA--------------GATCGGTGCTGCTGAGGAAAGCATTAGAGCTCAAGTGTTAATTTTCTTGGTGAAATCTTCACTCCGT-----------ATGGGAATCATGGCGCTGACCTCAGAGAGCA-TGCTCAAACCCATGGGAGGATCCA---------------GCCAGGGTCCTTTCTTTAGTCTTTCAGTGAAAGCAACCAATTTGTGAGAACCATTGTACTTTGAGACATTCTACAAAA-GGGCAGGGCAAGGTGGGGGAACAGCTGGGTTTCTGAACACATGAAATGAGTGAAGATCTGTCTCATAGGGTTCTCACTAACACTGAGAAATACTTTCAACAACAGCCATGGCCACTAGGGCGCTGTAATGACATGCCCCATTATAAAATGTAACAGTAAAGCAACGTAGGAGTGGAAACTTAACAATTGAACATTTAATGGCCACAATTACGGCAAAAGAATAATGAACCTATTAGACAGGAGAACGGGCAATTACTCCACAGCTTATTGGAATACAGCTGTGAAAAAGTAATACAGCCGCATACTTAAGAATGGTTATTAAAAGGGGATAATGCATTCTGTTTACACCGACAGAAGCAATTTTTCTCCTGAAATGAAATGGCACTTTTTGGCTATCAGACGTATGAACTCAGATATGATGAATCCCACTCTTTAAAGGTAATGCATTTTCAGATCTGCCTTTCTAGCTATAAATGATGTCTCCA-TAAGACCATAAGGGTAAGATC-ATTTTAGTGGAAGAAATGGAAGAAGATGTCAAAAACAGACTTAAAAACACTAAATAAATCACCTAAAGAAAGGGAGGGTACATTTTAACTGATTCAAATGACTGTGATAAATTAAGCCTGTATGAGTTCAA-------------CAACAAGAGGTGTTCTGAGCAGCGG-GCACTCTTTGGCTTCACCGTTTTGGTGTTCGGGAGTGATGGGTGTGTCCCATTAAATCTTCAGTTGGAAATGCCG-TAAACACAATTTATGTGGGTAAATTCGCCTGGTGATACATCCTTACACATGTAGCTATCAGAAC---------CTACCAAACAGGGGGTTATCTAGAAATGACCGTCCAGTCAAGTGGTCGAGCAGAGTACTGGAGTGCCATTGAAG----AGAAGGATGCCAT---CAGCCGCTCTCGACAGGAGGAAAGCTGGACTTAG----TGAGGACCCTGACACCTGCC---AGACTGATTTCAAA---GAATATACATTCTTTGAAATGTATATTTGAAATGTGTGGCCATTTTCAAGGCAAATTGGCAGAGCATGAAACAGAAGTCTAAGCTATTCAGAATACTTGAAAATCATGG----TCTATGGGAG-------------------GTTGCCAGGCCATGGAGGACCA---ACTCAAGTCACCTACAGCAGAGGAGGAGG--CCTTCATTTTGAGTCTTTACACAAGGAAAGGCC----CACGGTGTACAGTAATG-CCATGATTGGGGGACAATCTTCTC--AGAGAAAACTCCACTTG-----------------CTTTCC-----ACCGTCCAGTCATTCTACATGGTATAATTAGGGTATAGTGA-------TTGACTGTGAGCCTCAATTTAATATGGAAAATTCTGGTGAAGGAATGTTTCTGATGTTCCAGTCTGCCTTTT
s HiC_scaffold_1 139969691 1935 + 233722169 AGATGT-TTTATAAAAGGCCTT---TCTAATGCTGAGAATCCA---AAGCAACCAGACAAAACCCAAGCAA-------------TTATAATCAATAAGTTTAAAAATCTCTTATCACTCATCTGTCCATCTTGGTCAATAGAGCCTTCTAAA--GTACTATAAACCAC--CAGTCAGAATAATGGAGCCCAGACCACAGCATGTGACA--TCTAGACATGTCAAGCGCTCAT-------TTCATTGCTGTGAGCATCATGGATCATAGGTTAACAATCCCGTAACCCTGATGGATGTATCTTCCAATTGATGTAAAAGCCCCACAAATCTAACATGATGTAAAATAAGGCTGAGTGCT--TGAAAAAACCATTA-------AGTCTTAATTTCCTTAGTGAAGTCTTCCCTCCGTCACCTTGTTAGATGGGAGTCCCAGCATTAAGGTGAGGACTCAGTGCTCAGACACGCTG-AGGGTCCATCATCACAACTTGTAGCCCACCTCATGTCCTTCAGCTTCTAGTAAAAGCTGCCAATTTATAAGCACC----TGTTTCTAGAAGTTCTAAAAGACAGAAAGGGCAGGTTGTAAGGGCAGGTAGATATctgaacaaataaaa--actaaaa---tatttcacagaaaactcaTTGACTTTTAGAAATACTTTGAACAATAGCCATGACCACTGGGGTGCTGTAATGACATGCCCCATTATAAAATGTAACACTAAGTAAACGTGGGAGTGGAAATTTAACAATTGAACATTTAATGGCTGCAATTATGGCAAAAGAATAATGAACCTATTAGACAGGAGAACTGGCAATTACTCTACAGCTTATTGGAATACAGCTGTGAAAAAGTAATACAGTAGCATACTTAAGAATGGTTATTAAAAGGGGATAATGCATTCTGTTTACACTGACAGAAgcaatttttcttctgaaatgaaaTGCCGCTTTTTGGCTATCAGACATATGAACTCAGATATGATGAATCCTACTATTTAAAGGTAATGCATTTTCAGATATGCCTCTCTAGCTGTAAATGATGTTTCCACTAAGACCATAAGGGTGAGATCTTTTTTggtgaaagaaatggaagaagatgTC-AAAATGGACTTATAAATGCTAAATAAATCACCTGGGGAAAAGTGAGCTAAATTTTAACTGATTCAAATAGCTACAATAAATGAAACAGCTACAAGTTCAAAGATGAGGCTTGTCAAAAGAAGGTGTTCAGAACAATTACATGATCTATGAAATCACCATTTTGGTGCCCAGGAGTGATGGATGTGTCCCATTAAATCTTCAAATGTATACACTTCTAAGCACAATTTATATGGCCCTCTACACTTTCAGATCTATCCTTCCAAGTGTAGTTATCAGAACTCTCGAATTCAGCCAAACAACAGGCTGGCTGAGAACAATCATCTAGATAAGGGGTCAGGC-----ACTGAAGAGCAGCTGAAGTGTAAGAAAAGTGTCCTAGCTAAGCGCATTTGACAGAACGGAGAGAGGGCTTAGCCCTTCAAGTCCTTCACATCTACCCAGAGATTGGTTTTGAAGGGGAAGACACATCCTT----GTAGCAAGGTGCCATTTCTAGCCATTTTCTAGTTAGATTGGAGGAGTATAAGATAGAAGTCTAAACTGCACAGGATGC-TGAGAATCTGGAGACCCCTGAGGTAGTGCTCTGGTTTATCCCTCTGTTCCCTGGC-----AGGATCATATACTCAAGTTATCTGAAAGAGAGGAACAAACTCTTTTAGTTTGCATCTTTC-------AAAAGCTTAAACAGTGTTTATAACAATGAACATGATT-GGGTACAAGCTTCTCTGGGGGAAAAATCTACCTGAAATTCAACTCAGGTTCCTTTTCCTGTTACTGGCCTATAATTTTATGGGATATCATTGAAGCATGATTACCAGGATTTGATTATGAACTT--------TCCTGAGAATTAGGGGGTACAGATGCTTCATCTACTCTAATTTGCAGTTT

a score=15586
s chr3           153143133 1377 + 160039680 AACCTTCTCTCCATC-AAGTTCAAGATAACAGGAAATGA---GAACTCCAGCCTCTGGGGGGAGCAATACAAGTGGATAGTGAAGGTA---GCCCTGGATGGGGTTACCATGTG---TCCAGGGTTGCCTCTGCCTCTGTCCTGCTGATCTCCCCACTGCTGCACATATTCC------TTGGTCTTTTCTGTAGGTTCCTATGTGAACGTTGG---TCTGCTCATTGTGGAAATACTTTGTATCTCTTCTACTTTATGATCCAGTTTGCTTTTAGACCT------------CCATCTCTTGATACAGCCTTTCCTGGGTCTCTGCTT--GCTTTGCACTTTCTCCACCAATTTCCTACCCAGTTTAAA-----------ATTCAAAGAAAGAGCCTGGCAGAGGCCCTGGTGTAGAGCAGCTTG-CAGCATCTGCTCCCTGCTCTCCTGGGCACCATGGTGGAAGGAAGGAGGAGACAGCAGCCCCTCGGGGACCTGGGGTGGGGT----GGGTTCGGGTCGAGTGGGGAGATTGCTTCCTCAGTGTAAGCACAGAGGTACTGAAATGTGAACTTCTGGCTTCTTTGATCTGATCTTACAGATGGTTCAGCAAGAGGTGAGGAAGGCAGGTCAGAAAGAGGGTA-CCATCCCACGACTGTGCATGTGTGTGCTGTTTCAGACAGAACCTATTGTGAAGTGAAACACGGAGACTTTTTTGAAAATACCTCAATTACTTCATGAGGGATGTAATTATATTACTCTGTGTGTATGTTAAATTTTCTACATTGTTAAGGGACA---------ATATTTAATATATGTGTCATGATTTGTCA---CTTTATGTACCTATACCCGG----------------AGGATCAAAATAAAGGA----AAGTAAAAAAATGGGGGAAAATAATCTATGTTTCTTTCTGTTTCAGAGAAGCTCTGAGGAAAGAGAGAG-GAACAGAGGAAGGGACAGGGATGAAAGGTAAAAATGAGAAGGAACAGACAGGCGCTACTTTCGTGCGTGGATGAAGAGACATGGTCCGTGCTTCTTATCGATCTTTTTGCCCTTGGTTTCTCCTCTACCCC----------AAATACAATGGCCCTCATTTCCTAGTGCCCAGCTCTATCCTAATTAGCTTATGTGAATTAAAGTATGCAGAAGAGACTGTG----TTCCAC----ACGTTTCTAAAGGCTCTAC------CTGTCAGACGCACAGTGCCAAGTTCCCTGAAGCCAGGACTTCACATAGTA---CCTTGCAAGGGTTTCTTCTATTGA--CAAACTCAGTGAGTTTTGAAAGCATGGAGCACTTTAGCATTCCTCTCCAGATATGCACAGCTATTCAACAAACAGCTCTGCTGCCCACGGCTTTCCCCGGAGACCATTTGGATAATGAATTGGCACCGTTCCCCCCGACTCATCTGTCCCAAATGTTTCATAGAAACGCTTGACTGGTCTAG
s HiC_scaffold_1 139971642 1381 + 233722169 AAACTTCTTCCCACCCAAGTGCAGAGTGATGGGAAGTAATACGAACACCTTACTTCACAGGGCCTGCCCAAAGTAGGTGGAAAAGGCCTGTACCCTCCCTGAGCCTCCGTGGTGCATTCCAGTGTGACACCTGCC------CTGCTCTGATTTCAATGGCTGCTCAGGCTCCAGGTTTCTTGCCCGTCCCTCAAGTGTCTCCTTGGACTTTGGGTCTGTGCTTGATACCAAAGTATTGCTCATCTCTCCATCTTTCTAATCCAGTTTGATCTCCAATTCAGTTTCCCTGAACCAACTATTGTTATTTCCTTCAGtgaatttctatttttgatttgCAGTTAGTCAGTGAAT--CTtaacacatgcaaacacacacacacacacacacacacacacacacacacacacacacacaaagaaactcAACGGGA------------------GGGCCGCAAGGTGGTCAGGAGAAAGGGACTGA-------CTGATTGCTAAGGTGGGGTCAAAGCataggggaagagggagggactTGGT----CAGCAGGAATGTAAATGTACTGAAATGTAAGCTTCTGCCTTCTGAAATCTGATCACGTGGACCATTTAGAAAAAGGCTGGGAACATGGATTAGAAAGAGAGCAGCCCTCCTTCCATCTCAGACTTGTGCACGGTTC---ACAGTGCCTATTGTACAGTG--------------------AAATATCATAATTATCTTATGAATAGTATAATTACATTGCTTTGTGTGTGTATTCAAATTGTCAGATTGTTAAATGAcaacatttaatatatttaatacatgCATTCTGAtctgtcatttctttattttcctatatctgggtcctcaggaaaaaaaagagacaaaaaaaaaaaaaacaagaaagaaaagaagagaaaatattctaGACCTCAATAGATTTCTGAAAAAtgctggggaaagagagagagaaaggagtgggaaagaaaaaaaaaaagtaaaaat-ataaaaactaaagggacAGCCCTTT------TAATTGAGGTGCCAATG--------------CAATCCCTTTGACTCC--TCTTTCATTCACCCCTCAAACCTTAAAAtactctttcttttgctttctggtGTCTGATTGCAACCTGATGAACATACCCAGATGAAAATACGTGGAAGTCAGCATGCATCTTCCATGACAACAGTCCAAAGAGTTTTATTATCTACTGACATATGCAGTG-GCCAAATTTCCTG-ATTCTTGACTTCACATAGTAAATAATTGATAAATACTTTTTTAGGAAATCCAAGtcaatgcattttaaaagaatagtgCA--TTAAGA-TCCTCCTCAATTACTTGCAACAAATCAGTGAGCATCT---CTGCCTAAAGGTGTCTCCATGGGACATTTG--------ATAGGAACATTTTGCC---------CTCTCCTGAATTTCTCATAACAATGTCCCACTAATTGAG

a score=55923
s chr3           153145192 3824 + 160039680 [encoded data, 4607 characters]
s HiC_scaffold_1 139978362 4431 + 233722169 [encoded data, 4607 characters]

a score=25586
s chr3           153163165 1204 + 160039680 AGCATAGTCCTGTCTGAAT-CTTCTAGAATGCCTATTCCTGCAGCTTCGGCATTCTAGAGAG------TCAACATGTCCACAGGGTGACA-GTAAATTCCACTGCCGAGAAGTCAGTTTTGACCATGGTGAGCCCCTCTTTTATGCCCATTTTGAAATGAGGCTGCTGGCCACCCGGTGACACTGGGTAAAATGCAGTT-----------------GAGTACTGAA-----------AGCTGGATCAGAAACG---AGAAGCTCAAATGGTTTATGGCATCCACACTTG-CCTGGTTATCTT-----ATGGGTGGGCAAGATGT----TTTTCTTTACCGCTATTGAAGGGTCATAATGTATAGTCCAAGCTTCATGCCCCACCCCC----AACATCA----------TAACCAGAAATCCAACTAAGGCAAAGAACGCAAGATCAGTTAGCTCCCCTTTCCTGGCACTATATTTATTGTCCAGCTAAACCAAAAATATAACTCACAGCTATGTTCATAAAGGTACAG-CTCTTGAAAAATTAATTCCCCAACAGAAG-TCAATCACCGCACTTGTC---------------------------------TGGACCTCTAAGATGAAGCCCTCCTTGACCTAGATCACATTAAACAATGGATAGACATATTAATGCAGTTGGCTGATCATGCCCTGCACCATCCTCCCAAGTCTTTGACT----GGTGATCAGGCAGGTTTCTAC-----CGTTTCCTGTGGGGCCACCTAACCCAGCCAAATCAC---TATGTGATCTCAAAAATAACATCTCCTCTAGCCAAAACCAGTCGCTATAGCAACATCCCAAGGATGCTTTGTGTTTCAGTCAGTCACCTCAGGTAACAAGTCAGCTGATTTGCCTTCTGGCTTTTCCC---------------CTAGC------------AAGGATGAAAAGGCCT-ACACCGGACATCCCAGTTTGACTGCAGAGAAAATA---ACCTGTTCAGAAAATGTCCTTGTTCCTTCCCAGGGTCAAAGAGGCTAAATTGGAAAGGAAATCCA---GACAGGCAGCGGCCCCAGCACAGTA-CTCTGTAATAAGCAGGACAAGGAGGGTGGCTGCACAGAGTGACAGTTTGGATGGGTTGGAG--AAAAAGTAGAAtctctcaatctctctctctctctctctctctctctctctctctctctctctctctctctctTCAATTAAGAGAAGTTGAGGAAATGGGTCATCTCTGGCAATGTGTCTTGCAGCTGGGACAGACCATCCCTTGGGGAAAAGGCTATCGACTTTTTGCTTGGAGTGTTCAGTACAGCTTC
s HiC_scaffold_1 139996308 1262 + 233722169 AGAATGCTGTTGCCTGAGTGCTTCTAGGACGCCAACTCCCCTTGCCT-GACAC-CTGGAGAACTCTCCTCCACCAGTCAACAGTATGACTTGTAAATCCTTTCTCCAGGAACTCATCCTTAACCA-GATGA----CTTCTCAAGCCCTGTCTTCCCATGAGACAGCTGACTACCTGGGGATGCTCGTTAAAATGTAGTTCTCTGGTCTCAAAGTGAATGTATTGAATCTACTTCTGAGGTTGGCACTGTGAAGTTAAGAAATCCAACCCGACTAGATCATCCACATGTGGCCTGGCTGTCACTACCAACAGGGCAGCTGGAGGTGGTCTTTCGTTCACAGCATTTAAAATGTCCTTTAGT----TCCACCGCTCATATCCTTCTCCTTCTTAACACCAGCAGCAGCACTTAACAAAGCTCTGACTAAGGCAAATAGCCAAAGATAGCTTAGCTCTTTTCTC-TGGCACCCTGTCTG----CCAGCTGAGCTGGAGATATAATTCATGGCAGCAATCCTGAAGCTGCAAACTCTTGACAAATTAATTCCATAACAAAAAATCAATCATGGCACTTGTTGCCGGCATACATAATATTTTGAGTTTCCTGTCTTGCACCACTGAGACGAAGACCTCCTTGACCTTGAT-ACATTATAGAGTCTGCTGATACATTACTGTAATCAGCTGGTCACCGCATGTGTCTTCATCCC---TGCTCGGCTTCACAGTGATCAG------CTTTACGTGCCTGCTTCCTGTGGAGCTAC-TAACGCTAccaaattaccattatttgatAGCAGAAAGAACACCTCCTCTAGCCAAAAATAGTAGCTACATCAACATCCTGAGG---TCTTACGTTTCAACTGGTCACCTCTGGCGATATGTCAACTGATTTGCCTGCCAGCTTTTCCCTGAAAAAAATATCTGCCAGCCAAGAggtaggagaggaaaaaaaaccctcacacTGGAAATCTCAGTTTGactgcaaagaaaataatcacttGTTCAGAAAATACCCTTGTTCAATCCCAGGGCCAGACAGGCtacatgggaaaggaaaagtatTGAACAGACAGCTGTGTGAACGCATCAGCTATATCGGGAGTGAAGTTCACAGGCTGGTGACATGGAGTGACAGGGTGACTGGGgcggagacaagaaacagaactgGTTAA-------------------------------------------------------AATT-AGAGGAGCTGAGGACCTAG---ATTCCAGACAATGCCAACTGCAGTTGGGGCAGAAGAACCCTCAGGAAAAGAACTGTCGATTTTTCCATTGGGTTGCCCAATCCATTTTC

a score=34970
s chr3           153164988 1724 + 160039680 GAGCAGCACAGAGTAGACTCTGCCAGGGGTGTCCTCTTAGCTGCCAGGAGCAGTCCTGCCCATTGCCTCTG-GGTTATTTGCAGATAAAGCAACAGCTACTTGAGCTGTT--GGGTGGCTGGTGGTCCCAACTCCTGAACTGGACCCTTAGT--CTGGTGTCTGTGC-------------CTGGGGCCTAAGCA-AAGGACCCTCTGTGAGTATGCTCATGAAA-GCAAACACCCAGAAAACACACCAGGGACATAGATAGCTGAGCGCCAAATGAGATGGCTCATTTTCAAAGCTCTTAATTTGCTATTTTATAAAGTGATCTTGTGGCAAGGAAAAAAAAAGAACTAATTAAGCATTTCATTATCTGACTGACACA-------ACGCAGTGACAG-------------------GAGAAACATCTGTCCCGCTCTAAAGCCGAGAAGTCCACAG-CCAGGAGAACATCTGCAGATGGGGAGCTT-AAAACTCAAAGTAGAGGAGACCTCAA------------------GCCACCAGGGAATAAACTCTGCATAAAGTTTGCTCTCCAAATGTATACAAAGAAATTATGATTCTTGGAGATAATGGCTCCCCTGAACACAG----GAGCCTGTTGCAAGTGACAGTGGTCTCATGAAACCCAAGGA-----ACTGGAACTCACT--------------TCATGTTCAAGGTTCTCCTACGT-TCTTACTAACAAGCAATTAAACTGCTGAGAGGACAGATATGTGTGGGCCACAGGGGCATGTCTGTTCCAATTCTAGTGTGTTCTAACTCACCCAGGCTGCATCTTTGCTTGCTGGAGGAAGGTTGGGTGTTGAT---AGAGTTGTCTCTGCATTTGCATAAACCGGCTGCAAGAGGCAGGGTTCT-TCCAGCTAGTGGGATTTCATAGAGAGTTCCACTTAAGCCCCCTCCA-------------TGAACACTAATGGAAAATGTACTACTAACATTACTCCTGTATTCTG---CTCCCCAGAGCCAGGCCACTCAAACGCACATAAGAAGATACAAATATCTGACACAG-------GTGTTTCCTTATAAAATTAAGATGGTTGATTAGT-CTGCAATACAAAGAATACATAAAAGGAAGAAGAATAAATAAAAGTTATTTATACTCTCATGTCAGTGAGAATTAACTGGCACACTTCCTGATGGATTACAGGCCCTTATGAAGGACTTGTTAACCCTTAGCATGCTTGAGGCCTTTCCTTTGAGCTCCAGCACTGCAAAGCTATGCCTTTTCTCAATCCTTTCTCTGTAGTGTAGAAGAATAGCTGATCTC-TGCATATCATTAGGGACATAAGTATCTATCCATGCACACAATCATGT---TGGCTGCTCAGAAAAGTGCTTATTTATTTCCTTAAAAAAACGAGGAGGAGTTCTCTTTAGACTTTTTCACTCATATTTTACCTGGAGGTATACGTGTTGTTTAAATAAAGCTCGGGTCACACTGAAGCTA-CTTTCTGCAACTGTGCTGTAGGAAACTTTAGCACTAGATGACGAATAATTTCTGAAGTCGTC-CATAGTCCTTCATCAGAGCTTTAGCTGGAGACCTGGCAAT-CCTGTTTGGCCACCAGTGAGAAGAAATTTA-ATAGCTTTTA------CTCTTTCATTCTTTCGTCCACTCAATAACAATTCTT-AACAATCAACACATGCTAGGTGCTA-CCTAGATATTTCCACCCTATAAAGGCACAACATTCTTACCGTTATGGTGCTTCATCTGTCATA-GAAGAGACAGATGA---AATTAAGTTTGATAAAATATT--TGAAGACGACAGCACCATGGCAGAGAG
s HiC_scaffold_1 139997621 1715 + 233722169 GAGTAGCCTACAGTGAGCTGGGCTGGAAGTATTTTCTCAGCTACCAGGACCACCCTTGCTGCTTTCCTAGGTGgttatttataaatgaaacaaaatatcctcAGGCTGCTCTGGAGGGCAGCTGGTTTGACCACC--------ATCCCCAGCAACTGGTGCCCATGCAGAAGCTTCCTGTCTGGAGTATAACAAGAAGGGAACTTTACGAG-ATTTTAATTAGACAAAAACATCTAGGGGACACACC-TGGACTTAGCTACCTGAGTGCTAAATGAGATGTCTCATTTTCAAAGCTCttaatttactattttataaaatgatcttGTGGCAAAGAAAA-----GAGCTAATTAAGCATTTCATTATCTGACTGATACAACAAAGCACAAAGTGACAGTGAAAAAAAAGCCAGCACTGGGAAACATCTGTCCCACTCTGACAC--AAAATTTCACAGCCCAGGACAGCATCTGCAGccggaagttttaaaaaattgaaagagaggAATCTTCAAATAGCATGTTAGAGAAATGCCACCAGGGAATCAGCTCCTAGTGAAGTTTGCTCTTCAAACCTGTACATAGAATTCACTGCTCTTAGAAATGATATTGCACCTTGCTACGGAGGAAAGCATGTTCGAGTTGGCAGTGATTTAATGAATACAAGGAAATTATACTGAAATTTACTGTGTATTATCTTTCTCATGCTCAAGGCTTTCCTAAGTATCTAACTAACGAGCAATTAAGCTGCCAAGAGACCAAGGATGGGTGGG-CAGTGGTAAAAGGCTGCTCTTGTTCTAGTGGTTTACGAATTGCCTAGGGGATCTCCTTGATTGCTGGGGGAATGCTGGTTGCTGATGTCATAACTGTCTCTGCAATTGCCTGAACAGGCGATGAAATTTGAGACTCTCTTTAGTTGGTGGAATTTTATAGGGGACTTCATTGTAGCCTTTTCCACTCATATTGCAGTTGGTCACTGTCAGAAAAGG-----------CCGTTCATATGTTCTGAAAATGTCCACGGACATATCACTCAAAATCACATAAGGCAATA-----AGTGCActcagtttcattattttttattataaaatta--atagacGATTAGtgcagaaatacagaatataCAAATGAGCAAGAAGgaagaatataaacaatttataatCCTAGGCCAGGGACAGTTAAGTGGCATGGAGCTTAATGCGTGCTAGGCacttaagaa--atttattta--------------------tttatttttggtactgggactt------------------------------------------gaattcatgatctcatgcttgcca--aggcagatg-----ctatgc---cactgagctatatccctggcc-cccagaaa------tatt-------ttaaa---------------------taaatattttccttcattcttttaatGCACAGGCATccactgtttaaataaaaattatataatattgtaCTTAGTTTTCTGCAAGTTGATTGTA-AAAACTTTAGCACTAGATAGTAAATAGCTTTCCAAgccattaaatatttttacataactgTTTTGTATGACTGCGTGGCATTATCTATTTGGACACTTCTGTGGTAAAACTTATACAGCATTTAGCAAGCTATTCTCAATCTTTcatccattcaacaaatatttttaaacaattgttaTGTGCCGAACTCTATTCTAGAT-TCTTCATTGGGGAATGG-ACAAAATTCTT-CATTCAAGGAATTTCAATTGTAGTGTGGGGAGACAGATGACACAATTAAACATAGGAAATAAATGGCGAAGATGATTGCACCAAAGAAGACAG

a score=26859
s chr3           153167452 2668 + 160039680 TAGAGCCTGAGTGAAAGTAGAGACCAGagac-agacagacagacagacaTTTCAGAGTGGTAGATGTGCAGATAGGATAAGAGTGA--GATCAGG---GCAGT--TTAAGTACAAATAGAT----AAGGAGAATCAAAAATTTGGATTCATTCCTACACCACCATGTCCAT-GGGAGACGATGGGGAAGCACACCTAGGGAGTGATCAGTGAGTTTGGAGGAGCC--CCAGAGGCACAAGGTTCAGG----AGAAACAGGCAGAGCAGCTCATTG--------------GCTAGTGTTGTAATCACTA-TGCTGAGAGCTCCACGTAG--------GGACAAAAAGCATGCTCTCACAAGAA----------AGGAGCTG---TCC------CCTGCCGTTCAGCAAGTGCCTACTGGAGAGCACTCTCCTAGG--Tcccccttgc-caggagcccctgtgtaggtacagtatgtataaatgtacacggtagccATTAGT--CAATGagtgggataaagacca---------------aagaa---caatcgttgaatttaccactgtgggtgtgagcaatgaactcggctgggatcat-ttgttagatgg-tggtaacaagaaccca---gacagacaccgagagtctaagaactgagagcaa---aactggagac--tgaatatcaacaactatttggaggaccttttcttcaaagaggaatgaaaga---agacagtagctggtaggTAGGATGCTGTCTCCAAGGGCATGGAAGGATGGCAGGTTACTGTCATGTTCATGGGAACCAGCCATTCCATTGTCTCTTGCCTGGAACAC---AATGACCCCATTTCTTGCTTGCCTACCATCACCCATGCATCCTGT-AGCGTTTCTTCCAAAGTTTGCTGAACATGACTTTCCCAAAATGCAAATCACAAAGAGTCATGATCTCATGGCATAACACTTACACTC-CATCCACGGCCCTCACTTGGTGCCGTAAGATCCCTCT-----------------------------------------TAGTGAGCAACC-----------ATCTG--------------ACTTCCCATCACGTGTCCTCTCCTCCGCCGCGCAGCTGCAG------TCTCGTCAGTCTCCAGTCCTC--CTCCACA---CCACGTGTTCTCCCAGCCCTGGGCTCTGCCTTTGACCTTCGCTGC--------TCTGG-------AGCTGCCAACCCCTCTCCT----------------------CTGCAAT-----------CAACCTTCCTGGTGTGTTCTCTATCG-----CTTACTCCTGCCACCGGGGCTTCTGCCTTGT-----------------------CTCGCCACGTCACAGTTTCCCTGTCACTCTCTGTGTT-TGTCTCTGCTTCTT-TCTTTAACATACGGCT----GCCTGACTGAATGCACTTTCTTT----GATCTGCCTTCCCCACAACAATCTAGACAACAATCTAGTTCCCCGAGACACTAGCTTTATCTCACTTCCCACATTGACCCCTGGCCTGTACAATCATGTCTGACACATAGAAG-TGCTCAATGCGTGTGTTCCAAATCAATGGATAGATGAATAATTGAAACAGTACTACCATTAACACACCAGATCCTTAAATGCTGTCTAGTATAAT-GCAAACATGGGTCATGGGTTTGGATTTAGTGAGGCCTCTGGGGAGAAAGTAGAAAGGCG-----CATCCGCGGCCTCCTTG-ACCTATGATCTGAAGATGTGCTTTCAGAAGGATGAGGGCCTTCATATCAGTCAAACCTTTTCGATTTTTAATTCAATGAACAAATAGTGGTAGAAAACAAAAGCAGAAACATCTCCTGCCACAGGGCTATGGATATCAGCAGATGTCCAAGGCTCTGGGTCAAGGGTGTCCCATTACTTGCGAGTCTCTGTGGATTTTCATAAGTTGTTACATGTCTCTGGGCTGTAGCTCCCTTGCTTTCTATGTATAATTTTGTTTGtttgtttttgtttttgtttttgtttttcgagacagggtttctctgtgtaaccctggctgtcctggaactcactctgtagaccaggctggcctggaattcagaaatccacctgcctctgcctcccaagtcctgggattaaaggtgtgtgccaccaccacccggcGTATAAATTCTTTTATTTATTTCAGTCGCCACATTGAATAAGGGCCAAGTGAGATACTTCAGATAATGCTGAACAAATGCACATATGTATTTTT--GAATTAATA-AAGGTGAGGGTAACCCATGGGGAAGGGGGAGAGAGGTGTGTGGGGGGGGAGAGATAGAATAGTACTGCTACAGCCTATGTGGCACCTGGCACTTTAAAATATGTCCCCTGGGAAGAAAAATGAGACTGTTGTTGAGGCTGCCATAAAGAATCATTTCAAAAGTGATATTTTCCAACTCTAATAAGTCTGTGATCAGACAATCAGTTTCTGGGACAAAGGCCACCGCTTTCCACTGAGTGACCTGGAAGCCTGTACCATCCATTTAATGTCAAGAGTGTGCAGACGTAAGCGGTTTCT-CCCTGCCAAGAATAGGAAATAAAATCACGGCGTGGGGGAGACT-GACATGCCCGTCTAGGTGACCACAGAGACCCCCGCCTACAGAGGATCTTCTGGACGCACCACCGAGCAGCTGGCAGACAGTCTCTGGGGTGACCGGAGATGGCAATTTAAATGCAGCATTTGTCTCTGTTCCACAGAGAGAGGAGTATGCAA--------------CATTGACAGCCAGGGTGAGGGACTGTTCAGGGCCGCCTGTTATTTTCTGTCCTCTCGGGCACCATATTGTTTTTCCTCATTGTACTCCAAGCCCCTCTGTCCCCTATCACCTTCCTCCACTTACTCACTGTTCTGCCCCATTGCCT
s HiC_scaffold_1 139999526 2635 + 233722169 TGAAGACAGAGTG---GCAGAAATAAGAATCTGGGCAGA-ATATAGAAGTTTAGAAGTCCTGGATGTAAAGATAGTATCAAAGGGAAGGAACTGGATGGCAGTACTTAAGTGTGAGTGTGTGAGAAAGAAGAACCCAAAGGGCTGTGGCATTCCTACATTGATACGTTCACCAAGAGAAGACAAGAAA------CCAGGGA------AAAGTACTGGGAGGAAAAAACTAGAGATACGGGGTCCTGGTAGCAGGGAAAGGCAGGAGAAAGGAATGCTTAACTGTGTGAAGCTGTTAATGTGATCACTGCTGCTA----CTCAAGATAGTGCAGTCAAGATAGGCAGGAAGCCCTGAAAGGCACCCTGATTTGGGGAGATGAGTTCCTTTAATCCTGCAACCGAGCAAGTGC--ATTG--------TCAACTAGGCCTCCCCACTGCATCAAAGCCCAGGTTTAGAT----TGTGCACGACCTCACATGGAGACCCTCAGCACTGCTGAGTAAGATATGGACTATATCTTATCCATATCAAGAGAGTTGATCACTGAATTTAGCAATGTGGAGGCCTTTAACAATCTTCACAGGAGGCATGTTGGAAGAGGGGTGATCACAAATTCACAAGTGTTAGAACCCAAGA-----AGGATTGAGAACAAGGGAATTACAGACAGTGAATCTAGATAGCTCTTTGGAAGAGATTTGCCTCAAAGAGGAGCAGAAAACTAAGGCAGGAGCCGGTAGG--GGATGAGGGGCCAACAGAAACCGAAGAATAAGAATTTGT----ATGCTGACGGGAGCCGTTCACGTTTCCCTCTCGCACCTGGACCACTGCAATGCCTTTCTCACTCACTCCTTTATACTCATCT-TGCACCTAACCACCATTTCTTCAGATGTCCCTTGAGTGTGACTCTCCTAAATTATAAATCAAATAAGGTCATGGTCTCTTCCCATCAAATTTTGAGGCATAGTCAGGGTCCTGGTGATGATCAGTGAGGCCCTTCTAGGAtatctcttcttcagagtgtcCTCGCTCTCATCCTCCCCAGTATGCAGCCCACGCTTGCTCACCTGCTGCTTGTGTCTCCACATCCCA-cacgtccccccccccccccagggcttCTGCACGGGAACTTCCTCCTGTCTGAAGCCATCTGCTCCACAGTTTTGCTTCCTTAGCTTGCTCAGGTTTCTACGTT--AACATCACTTCAAGCCTTGTCTGACCAAACAGATTACTAGGCTTACTTTTTAAAGTAGTATTCAGATAAATTCTGGAATTTCACATAGTTCAAGTTTACTGTATTGTTTCACATAGGGAAACACAATCCCATGACAAAAATGTCTGCAATGTACGTTATTCCCATTATTATCAGCCTGACCACCTTGTGCGCTCCCTCtcactttctattttatttccgtGCTTTTTGTCTTCACTGTTCTCCTCAATACCTGACTTTATGTATTTCCTTTTAACAATCTGTCTCCTGCAAAACA-------------TACAATTCCATGA-AGATAAACTTTGTCTCAGTTCACATATTTGCTTTTGGCTTGTGCACTAAAATATGGCATTTAGAAGGCATTCAATAAGTTtatgtaaaagaaatgaagatatgaGTAACTGCAGGAATACTGTAATTTGCATTACAAATGCTTACCTGCC-TTTATTGTGTTTGCATTGAAGGACCATAGATTTGAGCTCTGTTTGGCCTCTAGAGA---AGCAGagagttttgtatcatttttattcaacTTGTACCCGTGTTGTAAAGATACCTTATTCAAAGTC----AGCCTCC-------TCaaaa-tttaggaattttaaaagaatgcaaaca-agtaggagaaaataaaaccacagatGTCTTCTGT-----GGTAGTGGA--------------CAGAACACTGGGT-----------------------------ATG---TTTTAGAAGGCGTCAT---TTTCAGTGCTGCTACT-------------TGTTTAGTGCTGTGTGATT--------------------------------------------------------TTCTGCAACTCAC---------CATGTCTCTCTAACATTTAGG-----------------CTCCTAA--TCTGTgaaaaagaatat-------------------------ctcttctacTTAACTCA----CCTCATGGCCTGAGGGCAAGCAGAGATAGCTGCGATGGTGTTAAATGAGTGGGCGTAAACATTTTGCAGGATGAAAAGAAAGTGAGGTCACTccacagggaggggagag-------------------gacaCAGA---GTTCTCCTGTAGCATCTGCAGACTCTGGCTTCTTAAAATGTGTCCCTTAGGAAGAAAAATGAGATTGTTATTGAGACTGCAGTAAAGAATGGTTTCCAAAGTGGTATTTTCCAACTCTAATAAGTCTGTGATCAAACAATCAGTTTCTGGGGTAAAGGCCACCACTTTCCACCAACTGACCTGGAAACCCATATCATATATTTAATGTCAAGAGTGTGCAAGCTTAAGCAGTTTCTGCCCTGTGAagaacagacaataaaatcgggCAGTGTAAAAGAGTAGACACCCCCACCTAGCTGGGAACTGAGAGGCAGACCTCCACATGGCCTGCT-GACACACCACCTA--------CAGA-------------GACCAGAGGTG--------------GCACTTGTGTGAGCTGTGAGAACAAGGGAGCTTCCAGAAGAATGTGGGTGCCAAAGACTGCAGGAGATGGGACCAGCTCAGGACTCCTTTCCTGCTTCTCTCC-CTCTGgcacctttcctttctttattctcctGTTCCA---CCCTCTTTCTGTCATTGTCTTCCTAACTCTAGTCTCT-TTCTG--TCATTGTCT

a score=27843
s chr3           153171600 735 + 160039680 AATGGACTTAGGGGGTAGGTGAATGCTACAGTCTCCCAAACACCAGATGCAAGCACCCCTATTAAGTTCACAGTTTGAGAGAGATGCATTTTCTACCATG--CCTCATATCAATAGGTCATGTAGAAAAAAAATTCATCTTGGCTAGGTCCAGTTTCATAGTTGAAACAGAAATCTATCAGCCCTGACGTCACCTGCAGGGCATAAGGTCACTGAGCAGAAAACCAATCTGGAGAACCTGACAAAGCTGGAGAAAATTACC-CCAGCTGCATGAAAAGCAGGATGAATTTCTAGAA----TATTTTCATTTTTAGAATGTGGTGTCTAGCAACGTACATAACCTTGGGAGTCTCACCTCCCAGACGTGTGGCATGGCCCTGGCATTGGCATGTATAATGTTAGAGCCACTTTGTCAGAGAGAAATTCATCTGAGGGCTATTATATTTTCCTGATATTAAGATTAAAAAAGAAAAATATGGGGGTGGATAAGCAAAAGAAGCCTCATATTTCAATCTGCGAGAGATTGAAAGACATTTTCCAAGGCGAAGACTTTTTCTAAGTTCTTTTTGTTTAAATAATTTGTTCTCCACCTACGCTTTCAAAGGCTATTTTGGTTGCTG---GTAAGTTTAGAAAAGTTTTCAGGGCCTCCTTCTTTCTTGGTACAACCGACTTCTATAATCACAGTATAGACAGCTGTTATCCAGATGCACAGCCCAGGTGTTAGGTAGAAACAAAATTGTA
s HiC_scaffold_1 140007617 735 + 233722169 AGTAAACTTGGGCACAGGGCAAAAACCAGAATCCCATAGGTATCAGGCAGATGCACCCCTATTAATCCTGTGGCTTGTGGGTGATACAATTCCTGTTGTGTTCCACATTTTAATAGGGCATGTGGAAAAGTA--TCATCTTGGTTACAGCCAGCTGCATAGTTTAAACAACAGACC--TAGCCAGAAGGTCACCCATGGGGCTTAAGGTTGGTGATTGGAATATCAATCTACCGAGCCTTACAAATCCGGGGAAAATTACCATCAGCTGCATGGAAAGCTTGATGAATTTCAAGaaatatcatttgtatttttggAGTGCAATGACTAACACCCTACTTAACCTTGAGATTATGATTTACAGGACTTACAGTGTGGTCC-AGCATTGGCAAATATAATGATAAAGCTGCTTTGTCAGTGAGAGATTTATTTGATGGCTATTAAGTTATCctgatattaaaattaaaaagaaaaaaattgtaggcAGGTAGGCAAATCAAGCTTTGTATTTTGAGCT--GAgcatttgaaatacattttctaaGGCAAAGCATTTTTCTAAGTtccttttgtttaaataaattgtCCT---CCCACACTTTTGAAGGCAATTTTGGTGGCTGATTATCAGTTCAGGAAATGTCTCAGTGGCACAGGTTTTACTTGATCAGTTGTACTTTGCAATCATCTTTTATAGAGATGTTGTCCAGATGTGCATCCTATGTGTTTGGTGAAAACTGCAATGTA

a score=44815
s chr3           153176324 1430 + 160039680 TGAAAAGGCATCAA-TATTAAGGCTTTGCTTCAGGAATGTTCTTGCCATTTTTTTTTGCTCAGCCACCCCTTCCTTAGGGTTCTATCTTTTAAAGGGGCGAGTCAGAGACCTTCTCTCTCTGCCACTAATTGTGCAGTGCCCCCTGCCTGTGGTGAGGGTCAtggcctctctgctgagactgccaggaccggatgcgattcctgccaattgcatggggagtctgtgT-GAGAGGATGGCCTG--AGAGAGCGCTCAGCGAGGAAGCAAACACTGATTATTTAATTTGCATTGTTTCCTCACGAATTTAAAGAATCTCCCTTCTGAAAGGA-ACATGGGGCAAAATGGTGGAAGACACAGCAGCTAGAGCAGAGGGGAATAAACACTGGCTTTTAAGAATAAGG--AGGAAACGCTCACAGGAGCAGGAC---TCGTAAAACACAATGTTATTTAAATAATACTATATTTCTCCTGCCTTATCATTCTGATTACACTCAACTAATCTACAAAATTGAAAGGTAATGAGCAGTATTTCCTTAAAGCACATTAAATAATAGTGTCAAAATGCAAATTTATTCATTAAGTATAGATGAGTATGTTAAATATTCATGAGTTGTTGCTCTCAGTGTGTAATTAATGCCATGGTCTTTGAGTCCAGAGTGGTGTGGGGATGGCGAGGGTTGTGCTTCATCACAGCTGCAAACTGATACCAG-CCCTCAAATATTCCCGAGGACAAAGGTTAGGCACCTATCCGACCCCAGG------ATTTTATATCGAATGTTCTTGGAAACACAACTATGGGATGGCTTTAGTTTCATTTTTCAAACTTCTGCTGTCTGATCGTCTAGGTAGGAAATAAG---TCCAGGTTTGAAGAAACTCTTGTTTGGTGGAATACCCTACACCCAGAATTCCCTTTTGTTTGGTTTTGACCTCAGGCAAGTGGAAGTATACTACAAAAG----------TCTCTCTTCTAAGCAGGAGATGTCATGTGTTTCTCTGTTTTGACCCTTTGCTCCCTCTCCCCTAAGTGTAGTCCTTTCATTTGGGGGAAGAGCCCTTGGGTTTAGAATCTTTTGAAAACCTAGTCCA-TTTTCTGTCCATGGCCCATCTTATCTAAGGCCACATGGAGTCTGTCAATCACTCCATTTCTTAAATGACTGGTGCGCCTTATTCTTGTAGACTCTTGTAGGCTTCAATCACAATGTTTGTTTGTTTTTAAATTTACTTCCCAAGGTATTC--ACCGGACCTTTCCTTTTGATTCAGTTGTATATCCCAAACAAACCTGCGAGGACAAAGTAGCAAATAAGACATT-TATGCTTCTACCAAGAATCAAAGATGGTCTGA--TTCTAGTATTTTCTAAATGTATCAATATACATTTTAGTGTTCTGAAATTGCAAACACAGACAATAGATTCTTTTGATGC-------TTAGCTTATCAAGAATTAGATA
s HiC_scaffold_1 140019080 1388 + 233722169 TGATAAAGCAACAAACACAAAAGCTTATCTTCTGTAATATCCTCGTGAGTTTTCCTTAG------ACCCAATGCCCAGGGG-CTCTCTTTTGCAGAGA-AAATCAGAGACCTTCTAGGTTTTGCACCAATTCTGCAGCTCCCGCTGCTTGCTGTGCAGGTCGAGGTAGCCTTGCTAAGACT-CCAGCTCAGGGTGCAACTACTCTCTAGTGCACTGCGATGTTTTGTTGTGAGGGAGTCCTGCTACAGAAcacagagagggaagaaaaacactgattatttaatttgcattgtttttccATGAATCTAGAGAAATTCCCTTCTGCAAGGagagctgaggcaaaaagatt-aagACAGAAT-GCCAGAATACAGTGAAATAAACATAGTTgcttaaaaaaaagggaagaaaaaactcacagGAGCAGAAACAGTcataaaaaa-aatgttatttaaataatGCTATATCTCTCTTGCCTCATCATTCTGATTACATTCAACTAAT-TACAAAATTGAAAGGTAATGAGCAGTATTTCCTTAAAGCACATTAAATAATAGTgtcaaaatgcaaatttattCATTAAGTATAGATGAGTACGTTAAATATTCATGAATTGTTACTCACAGTATATAATTAATGTTGTGGTCTTTGTGTCCAGAGCACTGAGAG--CTAAAAAAGTTGTAC--CATCACCTTTATAAACTGATACTAGTCCCTGAAATGCCCCTCAGGGCAAAGGTTATGTACCCAGCAGCCCACaaactgaatattttatattgcattttaatAGGAACACAGCTATCTGGTGACTCAAGATTTGTATTTTCAGCTCCTACTATCTGATAATCTaggtagaaaataaatatttcagacttAAACTTCCACTTATC---CTGAATATATGAGATCTGAAATTCTC-TTTGTATAGTTTTAACCTT-GCTAAGCAGAAA-ATACCACGATTTtaccttcttctctttcttctctgaa------------tgtttgtttgtttga-----tttcttttttttttttaaaactcagtctTGCATTTAGGGT-GGAGCCCTTGAGTTTACAATCTCTTGAAAACATAGCCCATTTTTTTGTCCTTGGTCTATCTTCTCTAAG-------------------TCATTTCTCTTCCTAAATTACTAGTAGAC------CTTGGGGGCTCTGGTAAG--TTAAATACACCCattcatagtatttttatttattttctaggtTACTCTAACCAGTGTTTAGCTATTGTT---GTTG-ATATCTTAAGAAAATCT-------CTGAGTAgcaaatgaaaaatcatatttttataaaaaaaagctgtgattgtttaaatttttgctcttttgtttgtttattaataaACTTTATAGTGCTTGgaaattttaaagacaga------attcTGTCTGTCCCAATTCTTTAGCTTATTAAGAATGAATTA

a score=22627
s chr3           153181068 1220 + 160039680 ATACCATCAACATCAAGGAGGAAAAATCAAGAATGTATCTGCTCTCCTGTGACTGTCTGTGGTGCGAGAGGGCAAGAAAACATCTGTTTATAATTGGAGTCCCCAGAAAGCTGGGCCATAAACAGGCAAGGAGAATTTCAGGATGCCCTTTATCATTGTCAGTAAAAATATTGATGAGACAA--GAATACAGTGTATCAAGCATTGAAATAAGATCGAGTCACTGTGAAGGGCATCTCTTTGAGATGTCGTTTTTGTCCTGAAAATG-ATGGTGGCTACATTGATTCTTCTGGTCTTGCTGTGCGATGGGGC--TCA-------------------------------------GGCAGATGTGTTCGTTTGATTCCCCGTGGGAAAGCTAAGCAGGAGTTGCTTGGTGTCACACAGGGAGGctgacctttggacattgtgacccgaccttgccatctgcaaagttcattctcagtattcctgcaattgGCTcacacacacacacacacacacacacacacacacacacacacacTCTAGCACAAAATAAAACAACAATAACAACAACCACAGTAACAAAAGAACTCATTGTGTTTGAAACAAATCCCAAGCCTTATACTGGGCTGTACTTATAGGTTTCATGGGATGTTTGTAGAAGAAGGAAGCAAGTGGGGA-----------------TTATTATTACTATGTAATATAAAGGTGTTTTAAATATTTTTAGAAAAGATCTAGATTATTTTTTCATTTTAA--CTAGCACCTATTTTGGTAACGTACCTTCT---------GATT------TTATATTGCAAATGAAAATAGATATTGCCAACTGTCACCAAAAATGAATATTTTAAGTCTAAGT-GTTCAATTTAGTTTTACCTCTTGA----GTCTAATTGACCATTTAACTTT----TTGGTTTCTTCCTACCATATGTAAATAATTCACACAGGGGCGTGTGGAAGGCAATGATTACAGTATTGGCAGAT-AAGTGTATTGAGTTCAGTAAGGGCTGAGTTCTTGTATTGATCTTCCCACTTCATCACATCGACAGCTACAGCAATGAGATAGCAGAGCATCTGAAGGCGGGCTTGAGGGATGGAAATTCATTGCTCAGAGTCACACATTTGAGGAACAGCAAATCTGAAAGTCTTAGATTTCTCAGCTGAAGAATGGATTGTTTCCTAGATTCCT-TTGATTGTTAGCATTAAACAAGGAAGTAGGTGAAAAGGTCATAGTGGCAACTGAGTCCAGAGTCAGTACCCAACATGTAACTGATAAGCACCA
s HiC_scaffold_1 140023958 1057 + 233722169 ACACCATCagcaacaagaaa-caaaatcaagaatGCATCTATTCCTTTGTGAATGTGTATGGTG-GAGAGGGCAGGAAAGCAGCTGCTTAAAATTGGAATCATCAGAAAACAGAGTCACGA-CACGCACATTAAGTTTCAGGGCATCCTTTATCATCATCAGCAAAATTATTAGGGAGACAAAAGAACCCATTGTGTAAAACACTGAAACAAGATGGTGTCATTGTGAAGGACATCTCTTTGAGATGTCACAAAGG--ATGAAGATGAATAGTGACTGCATTGATTCTT----TCCTTGTGGGTTGTGAGGCCATCAATGCCCAAGATGATAAACAAAAGGCTTGCTAGGTGACAGCAGTGGTGTTTGTGTGCTCCTCAGTGGAAAGGCTGAGCTTGTGTTGCTTGATGTCACACGG-------------TGCAGGTTGTGAAGTGGGCTG---------AGGGTT--------GTGGACCTGGATTTTCCTCAAACAGATGT-----------------------------------------------------------------------------GGAAATGAGCGTG------------------------------------------------------------------AGGAAGCAGGTGGGAAAGAGGTAGCTGTCTGTTTAATTATTATTCAGTGATCCAGGGGCATTTCTACTATTTTTGAGGAGACTCTGGATTATTTACTCATTTTCAATCTGGCATTtgtatttatatcttattttctccCATCTtagatttttctattatatttcaaattaaaatgactATTGTTAACTATTGCC-ACAATGCATAGTTT-GGTCTAAATAGTTTGACTTGCTTGTATATCTTGGATTTATCTAATTGACCACTTAATTATATACTTGGGTTCCttctattatatataaa-aattcacataGGGGAGGGTGGAAGGTAGTA---ACAGCATTAGCAGATGAAACTTATTTGGCTCAGTAAGAGCTAAGTTCTAACATTCAG----CAACTTTTTTGTGTCTCTAGGTACAGAAATGAGCAAGTACAGC-TCTG------------------------------------GTCATGTATTTTATGAGTACTAATTctgaaaa-------------atctgaaaatgtgatttttt--tggaTTCCTCTTGATTGTTAATGCTAAGTGAGATACTATATGAAAAGCTCA-AGTTATAGCT-----CAATGTAAGTGCCCAGTGCATCATAAATAAGCCcca

a score=25293
s chr3           153186307 697 + 160039680 TAGGTAGTAAATTTCTAGGAGACAGGTATACTTTTTACTTGTAACACCTTGTCCTAAATACTGCATATATATTCATAGTTCCTGACAGTATTAATG-ATTTTTTATTGGGAGTCTCCCAATGAAAAAAATGAACACTAAACTCATTTTATTCAGGAGTTAAAATTTCACATAAAAATCCTATTGAAGAGTCATTGTGATAAATGAATATAGACTCAGAAAAGTGAGCCAGCTAAACTCCATAAAAGTTTTAAAATGATGTCAGTGAAGTCAGACATGGAAATGCTGAGACCCTTTAACTGCCTGGGATTGATTCATCCTGCGTGAGATGGGTGTTCTTCT-GTGGCACTTTGATCCAATGTT----TGTTGTCAGAGAGCAGAAACCTGGAGGTCTC-AGGTGCTATTCTGATTTGGATCCAAAACCATAATGAGGTTTTGATCCGTTTCAAGAGTGAGGACTTGTCTGCAGAG-ACGGCAGCAGCCATGGGAAGCAGAGGTGGTAATGGC----CATGGAATTACTGGCCTTGAGCCCAGTGAGGGACAAACCACACA----AGAAGTGTGGC-TAAAAG-----TGTCCACTTCGAGCATCTATGCATTGATTGCTTGGTAGGC-------TGTTTATTTCATTTTTGTTCTTCATAAAGTATTAAGTTTCCCGGATTGTAACCTTTATATTTGTTAGTCATTTAAAAGAATATTTTTAATGTT
s HiC_scaffold_1 140028657 688 + 233722169 TAGGTAGTATATTCCTAGAAGGCGGGCATACTTTCTACTTGTAACACTTTGCCCTACATAC-----ATGTCTTCATACTCACTGattgaattaatatattttttattgg-aGTCtcctataataaaaaaataatgctgACCTCTTTTTTTACATGACTTAAAACTTCACACAGAAATTCCATCCAAGAGTCATTGTGACAAATGAATATAGTTTCAGAAAAGTGAGCCAGCTAAACTACATCAAAGTTTTAAAATCGTGTCAGAAAATTCAGACCTAGAAATTCCAAAAACCTTTAACTCCCCAGGACTTATTCATTCTGCATGAAATAGGTGTTCTCCTAGTGACACTTTGATCCAACATCCCCATGTTGTCGGCGTGCAGCAGCCTGAAGGCCTCAAAGTGCTCCTCTGATTTTGATCCAAACCCATAATCAGGTTTTGATCGCTTTCAGAAGAGAGGCCGAATCTCTGGAGTCCAGCAGCAGTCACGAGGC-TAGAGG----AATAGTTCCACATAGA--------CCAAAGGCCCCGGAAGG------CCTCACATCTGACAAGTGTGTTGCAGGAGCTGTTTgtccacttc---tttctttcctttatttcaccAATTGGcatagaaatatttat----tctttatttttcat---ttattaattcttttgagtTACAGCTCTTGCTACTGTGATTCATT---AAGAAATTCTTTAGTGTT

a score=24075
s chr3           153190834 2259 + 160039680 CTTCTTTTCATCAGGAGCTCCAAGTTGTCACTTTGTGTTCTCAAGTTGTGAATATTTTCCATCCTTTGAGCTAGAAAGAAATTCTCAGTTTCATTGTAGCTGCAGGTGGTGTGGGTATGAATGGAAAAGCTACCTGTGTTTTCTTTTCTCTGTCCCGTTACATTGTTCCAGCTGTGATATAGACAACCCTGGACTAAGTTTCAGTGTTCATTTGAAATGTTATGGTTTGTTACTTTTAAAAATAGTCAAGCTACATTTACTT-CGTTTTTACCTATCTCTTAGTAAATATTTGTTAAATGGATTACTGAATTGTTAGTGTCAGAGAAACATTATTTATTATCACATATC----ACTAAATAATGTATAACTATTTTGTCTGCTTTCACAATCTTGCCATTTCCAGTTTACACACAATCTTATATATGTGT---------GTATATGTGTGTTTTGAAGTCTGCTTTTTAAGCTAATTTCAATTTTTTCCTTTCTGTC---------------------------------------------------------------CAGTAACTTATGCCTTTTTGGTTACAGCATTGCTAACAT---ATTAATTTTTAAAATCTGAAGGAATTCTTCCTTTTCTCTTACCTTTCTGTCATTTCATAACCTACACGGTTTCATTGTATCTGTGATATTCAATTCACAATATGGGTTTTTTTTTTCTGTTT-GAAAATAAAATCACAGATAATTCATGCTT-GCAATCAGTTTGATTGCTTTAAGTTCTACTGAGTACTAAGGCCATACCCACTCCCCAGACACCTTCCTTCATGGCCACTC-ATGGCACCCTCTGCCTATCACCACATGCTCTCCCTTACCCGTGCAATATTCTCTCT------------------TAGAGAACAATTTCACctctccttccctcttcctcctccacctctc--tctctgtttgtctctctccctcccttgctctctcATCTTTGTAAATACTACTCCAAAGGATAG-GTCTAATTACATGCAATCTACCAAGTTATATGCTGTATTCATTACCATCTCTTTGTATTTTGATAAACCCAGTTCATAACCATTCTTGGCATAAGGAAATACTGAAAATTTGCAAAGCAA--TAAGAATAAAGAAC---GGATCTGTTAGtctctctctctctctctctctctctctctctctctctctctctctTTAGAACTTGCGTACCTTTCCTC--AGGTTAAAGTATCA--TTTATT-------------CTTTGCCTCTTGTGGTAATGAATATATGTGATAGGCATCTTATAA---AGGGTCCCAAGATGATCGTG-----------TCTTCTGCTCATAAAAA---------------AATAAAACTTGCCTCAGCATTGCAAGGGTGTCATGTCTGGGACTAGACTGTGGGATTCGCTTGCTAGCTGTCTCTCCTGGGATGATTTTCATAaaaccagcttcaatattgacaggtatcctatgga--gactcagcctccagctgagacccatcacagagctcagcatagccaatggtgtaagactggaggt--gttcatctgcgtggctggccttcctgggacatttcagtcctagttaacaccttgcttgcagctctgtaagaggcaccaggacaaaggACCTTT-TATGTCATTGCTGTGTAGTTGGTCCATAACAACTGCAGTTATATAACCAATACGTGTGGAT---------------------ATCTGTTGTGGAGCAACAA-------CACGTAGGGATAGCCACCCGATTTTTTTGTGCATTTATTTGTGCATTTACTTCTCTACATATTTCTGTCATCATACTTTTTGTATCTTAACCTACTCCGTGTAGATGACT-CTAACTTTTTATCTGTA----TACGCATACCCTGAGTTTCATAGTTAAAACTCTATTGTCCTATATGTTCCTCAAGGTGACAATGTCCAAAACTTAA---AATTCCACCTGCTTCTTCTCCTCTCTTTGCTGCTTTGGGCAGTTATATCAACGTTTATTGTTTAAGCCCAACACTTGGAATTGTCCTGGATTGATCTGTCCTCCCTGTGATATTCCTAAGCAA------AAAGGTAGCATTTCT------------------ACCTTTGTACGCGGTAACCGTATGAT--AGT-TAAACTCCTTATTACATACAGCCTGT-GGTCTTGCGTGGTCTGC--TCTGGTTGCATTGCTTTTCCTTTGTTCTATCTAAACC--ATCATCAGCCTGCAGGTCTGTGGGTTCCTACGATTTCTCCCAGTCAGCTGCTGT-CGCTTTTTCCATGTTCTGGAGTGTGGTGCACTTCCAACTCTTC---ATGACTTCTCCTGTTATATCT----CATTCTGCCATGCTTGTCTCCTACATATTCCACCCCCTCCATTCACCCCCACTTATCACTCCCACTGCAGTTCAACCCCCTTTCTCCAGGAAAC
s HiC_scaffold_1 140031911 2250 + 233722169 CTCCTTTTGGCCAAGAGTTCTGAATTGCCATTTTGTGTCCCCATATAG--AATATTTTCTATTACTAGAGTAAGAAAGGAAATCTCAACTTCATTTTAGCCATAGGTGGCACAGCCC-------GAAAgctctttatttcactttttctctATCTCTTTGCCACATTCCATCTGTAATACAGGTAATCTAGCATTAGGCTTGAATGTTAATTTGAAATGTAATAGTGTCTTATTTTAAAACTGTCTCAAACTTCTTTTACGTAAGCTCTTAACTGCGACTTAGTATGTAGTTGCTATATGGATCAATGAACGATTGGCACCTG----ATATTGTTAATT-TAGAATATCTGAGATCAAA---------------------GACTTTAAGATCTTGCAAATTCTTTTCTATAGTCAGTGTTATCTACATGTTTCACCCTAATTTagctctcccttcctttcttccttccttccttccttc-cttccttccttccttccttccttcctccctccctccctccttctctctctctctctctctctctctctctctctctctctctgtagctTACAGATTCCTGA-AACAGCATTCTTGACATCACATCAGCTTTAAAAACCTGAATGTGTTTGTCATCTT-TCTTGTCTTT-----ATCCTGGAACCTACCCAA---CAATGCATTTGGGATTTTCAAGCCACAACATGTG---TCTGTTCCTATGTAGGAAGCCAAATCACAGACAACCTGTTCTTAGCAACAGACTTTACT-CCTTAACTCTGGATAAAGATTGAATTAAtacccttc---------cctttcttcctacTCACTCTACTACACCTCCT-TGTATGACCACAACCTCCACTTGAAATTTGCGATACTCTTTTCACTATTCATTTGTATATATGTAAAACAGGGTAA-----CTTTCCCAAGTCCTCCTTCgccttttgatttttgttt--------------------------tccttgtaaagGCAACTCAATGGGATTGCTTCTGACTTGATTCACTCTTTCACCATGTACACTAGATGTAT--ACAACTTGATTTATTTTGGTCAGTTTGGTT-ATGATCATTCTTGATGTAAGACAATGTGGAAATTTCACTAATCAACCTCAAGATGGGTAATCAAGGCTTCGTTA-----------------------TCCTTCTCTTTCATCCTTACTGTttagaatttgcattttttctctcttagattctagtgtcatttttattgtggaagcttttattttgcctttt----------agaGATGTAGTAGGCAGCTGGTAAGGGAGGGTCT---GACGATCCTGCACTTGCACAATTTCCTccctttaaagaaaatattctaaccCCAATAGAA--TACCTCCACATTA-AGGGATATCAGGTCTCTAATGATGCCATG--------TTGTGAGCCGTCCT-----------------------------------------GTGTAGTAAGGACTAAAGCATCTTCCAGCTAAGGAAC-TGACTGTGTTCAGC--CGCCA----CATGAGGTCAGAAGTGGGTCCTTCCACA-GGTGAGATTTCAGATGAGATGTGAGCCCTAGTTGACACCTTGACAGCAGCTCTGTGAG-TTCATGGAGGAAGAGAACCTGTATATGCTGTGCTTGTATTTCTAGCCCACAGAGACT---GTGACATAATAAATCTGTGTTAATTTAAACAGCTAAGTCATGGTAACTTTTTGCACAGCAATGGAGGGATCCTAACAGAGAGGATCCTTCAATTCTT-----CATGGCTCTCTG-ATTT--TTCTGTACATGTTTCTTGCACAGAACTTTTCACATCCCATTCTCTATTGTGCAGATGACTCCTAAATTTGTGTCATTAACTGGACTAGTCTCCTGAGCTTTATACATAAAGTTTCA--GATCTATATGTACCTCAGAGTGACTGTATCTAAAAGTTAACTGATTCCTACCTGCTTGTTCTAGTCTATTTCCTATCTC-----ATCCTCCCAAC------TGGGTAAGCCAAACACTTG--------------TTGTCTCCCCTCTCTGTGATCCTTTTAAATGACCAGTCAAGTCTAATATTTCTTCACTTAGAACTTTTCCACCCCTTGCAAACATTGCACTTATAATCAAGTCCAGCCTCCTTACTACATGCAGCCGGTAAGACTTGTGTGATCTGATGTCTGATCACACTG------------TACGTTTAAATCTAACAATCAACCTCCTCCTCTTACCGCTGCAAT--TTTCCTCCAACCAGCTACGCTAAAATTTCTTCAGATTGTGAAACTTGTCAGAGTTTT-GCTCTTCATTATGACTTCCTGCGTTACACTTGCAATACTTgcctctgctttccttcttcACATCCGCTTTGCTACATTCACTTCTGCTCGTCA-TTCCGGTGTGTTGAACTCCACTTTCTCCAAGAAGC

a score=55993
s chr3           153194114 2113 + 160039680 gcacaACAGGTGAAAGTTGGGACAGAGATACATTATGAGTTTTGCTTCT-------------TTAGCTCTTTTAAAGACAGGGATTGGATGCACATAGCTGTCATTTACATTAGAAAAGTTTCACTGGAGCTCTGCA--GACGAGTATACACGAGACCTCCTCCGTAAGAAAGGGATCATCAGAATAATTCACAGTCGTGCTAACTCCTAAAGCTGAGCGTGAATGCACATGGAGAGCAGTAA-----GATTAATGGGTCTACA--GACGAAAGTGATAAAA-AGATGCATATCTGCACCTGC-TTGTGTCCACCTTTAATGTTGTTTGAATTCACAGCTT----TGAAATTCCTTTGAGAAGTGCTGTTTGTTCAGAGACTACATTTAAATATAGGATCAGAGGCT---CTGTGAGCCCAGCCCTCCAACCACCATACCTCTTCCCCTGCAGCAAACTCCACAGCAGTCGGAGAGTCATTCTGAGCACTGCTCTGCATTGCATGTATTTTCATTTCAGTTT-CATAAACACCTTCTACACCTTCAAATAAGCACTGTTCTTGTGCAAGATGCTGCTGCCAGAAAGCTTCCTTTTTGTGTAGATGAAAGCAGCTCTGTGCCTTAGCGAGGGTCTCCTGGATCAGCCGCGACATCATGGCAGTGCCAGCGGATGCTTGGGATGCTCTTCT-GGGTTCCAGGATGTCCTGGGTCGCTCTGCAGCTGCAGGGGGAGCACTACCAC-------------TCTACTA------------------GCAAGGGCAGCTTGCAAACCAGAGCCGCTGCTCCATATGCCCCTTGGACCTCTGTGTTGTGTACAGCATTTTGTGTCCGAATTACTCTTTTGTTCACTACCTT------AGTC---TTGTGCCTATTTG--GAATTTTAATGAATTGTT---AACTCTTTGGTAAATGCCATAAAGAGA--CATGGCAACATTCTCATCTATATA-TTCCCTAAACTCCCATGCAGGGCCAAGAATTTAAATATACCTACGAGACATTTGTTGAGATGATATTTTCTTACGCAGATATTGTGAATGACTGGGACTAATTCCCTAGTAATATACTAATCAT-ATTCTAAAGCTTTCACTCCGGTTGCATTGCCAGAAATACTATTAAGCTCCTGGCCTATCCACTTCTCAACACTGAGAAGACAGGTTTGACAGAACGCGATGATTAAAATGTTTAATGTTCAATTAGCCTTCTCGGATCGCGTCTGGTGAAGGCACTGGTAAGCAATTTAAGTTTGTATTATAGTGAATATTGTTTTACAGAAGCCTTAAGAGAGCACCTTGAAAAGGGCACTGCTGGCTTGAAACTTAAAATATCCAAAGCATCACTTAGGAACTACGAAGTCCAGATAAAAGGACTATAGTGGGGGAAAAAAAAAAAGCGAGTGGCACAGACTAGAAAACTGAAAAAGGTGATACAACAACTCCAAATGAAGGATTCATT-TACTCTAGCAGAAACAAGGAAAAGGTGGTCAAGGTGAATGACTACTAAGTTTACAGTAGTCT--------ATTAACTTCCAATATTAGGAATGCTGGGGAACTAGCAGTAATTTTTCTGAGCTGTTACATTTCAAAGACACATCACAGTAGTAAGTATATAGAA-------TATAGAT-----TATGAAATGTG-ATGGATTTCCATCACTGAGAAGCCAAGAATGTATGCTGTGTT--GAGTATTGTGGGAA-AAAGTCAATGGTAGGCACTGGCAGAGTTAGGCGGGGGCAGGCATTGTTAGTGCCTGGTGGTTGTAAGAGTGTGCACTGACTGTCATATGT----CAGAAATGCAGGACCGATCACTGCACACAAGTGGAGCAAGCTAGGTCATCATCAAACTCTGCCACTGCTGATCAGATACTCCAAG---------CACCCAACCC-------TCTCAGGCTTGTGCTTGGCAGAGCTT----------TCAAATCTTGCTCTTCCTCTCAGGGGATGGCATCC----TCTTTCACAGAGCCAGAGAGGCTTCTAGAAGAAGACTCAGTAGT--GTAACTCCAAGTCT--CTAGTCATAGGAATCACTGAAGAATGAGTGGTCT----CACCAGCCAACATTTTACCCAATGTCA-----CCTAAAAGTCCACA--CTGACTTCAGACTCCTTCAAATG--CTTCCA--AGTAAAATCTGAGATGTCACCCATTAGCTCTGGTCCTGCCTAGTCCAGTCACAGAGTTGAAAACC
s HiC_scaffold_1 140037462 2200 + 233722169 GCAAAACCAGTAAAAATTGAGACAGtagcatattattattttttactttccaaGTTTGTTTCTTAGCTCCGCTGAAGTCTTCAATTAGATGCATATAGCTCTCATT-ACATTAGAAAATTTTCATTCAGACCCTGTGTGGATAAGTATAGATGAAACCATC---ATAAGAAAAGCATAATCAGGATAATTCACATTCATGGGAACTTCTAAAGCTGAG--TGAATGCGTATCAAGAATAATAACACAAGACTAATTGATCTACATGGATAAAAGGGATAAAATGGATCCATATTTACACCTAAATTGGTTCCACGTTTTATGCTACTAGAATTCACAGCTTACTTTGAAATGTCTTTGAAAGGTGGTATCTGTTcaatgaatacatttaaaaatagtgcCAGAGTCTTGACTG-AATCCCAGCCTCCC----------------------TAGCAAATTCCAGAAAAG--GTAGAAGAATCCTTGGCATTTTACTATActatgaaatttttcatttcatttttcaaaaataacctctatattttcaaataaatgctgCTTTTCCTCCAGACACTGCTGTCAGAAAGCCTCATCTGTGT-TAGATGAAAGCATTTTTATGTCTTGGTGGCTGTCTCCTCTATGAGCCATTTCAATACAGCACTGTTAATAGGAGTTTAAGATATACTTCTTGAGAGCCGGCATGTACTGTGTTATCTTG-------AGAGTCTGAATTACCCTATAGGTATATTGGTCTATTACTTGCACACATACAAAATGTGATGACAATTTTTATATCTGAACcatcattttctttgcttcttatGCCTCTGTATTACATATGAAGTTTTTTGTTTGCATCACTCCTGTATGCATGGCCTTTTTCTCAGTCACCTTGTAGTTGTTTGTGGAATcttgatgtattttttaaaactttttcacaaACTCCATAAAGAGAAGCACTGCAGCCTACTTATCTATGGACTTTCCAAAACTCTAAAGCAGTTCtgtgaagtttattttattta-gtgaTATTTGCTTAGATGAT-TTTTCTTGTAAAGATATTAATATAAACCAAGAATAATTCACTAATTATGTGCTCATCATTATTGTTGAGCCTTCACTCTAGTTGCATGGCCAAGAATACAATTAAGCTCACGGCCTATCTAAGTCTCAGTATTCAGAAGACAAGCTTGACAGTGTGGGATGATTAAAATGCTCAGTGTTCAATTAGCCTTCTTAGAGTAAGGCTAGTAAAGGAAAAGGCAGGTGATTTAAATTTGTATAATGgggaatattattttataaaaactgtaAGAGGGAAATTTTGAAAGGACATTGAATGCTTAAAGCTTAAAATATCCAAAGCATTATTTTGAAACTACAAAGAATAGATAAAAGGAATACA------AATATATCAAAAGTGAGTAGTCCAGACTAGAA----GTAAAAAACGCAACAA-AATTCAACATGCAGAATTTATTGTAATCTAGCAGAAAT-AGGAAAaggtgaaaaatataaatgattcctAAATCTACAGTGACATTCATTATCATAAATTACCAACATGAGGAATGCCATAATACTA--AATAATTTTCCTGAGTCACTACAGTTCCAAGACATATCATGAtagtaagtatataaaaatatatccatatattttcatatgaaatGTGAACTAATTTTCCCTATTGGGAATCAAGGAAGTTATACTTTCTTTGAAGCATTATGAGAATGAAATCAGTGATAGAAAGTCACAGAGCTGTG--------------ACCAGTG--TGGAAGTGTAATGAGTGTACTCCACAAATCCAGTGTACCCCCAGAATTCAGGAGTTACTTTTG-ACATGAACTGGGTAAAATTAGCCATCACCAGAAATAGACTGTTTTAAGAGGTGGCTTCTAAACATGTTTCCACTTAGACCAAGGTTTTCCAAAGCTTAGTctctttagaatttattttaagagTTAAATCTTGCCTTTGCACATGGTGGGT-ACATTCTACATATTTCATAGAAGTTTAGTGGCTTCTGGAAGGAACCTTGGTGGCTATTGAACACAACTCTACCTAATGAGAGGGTGCTCTAAAAATGAGGTGGTCTGATCTATCTGTAAATACATTGCATAGTTTCAGTCATTTTAAACATCCACATTCTAATTTTGGACTCTTCCAAATAGCCTTCCaatataaaaatctgaaattccATTCACTAACTTTAGTTCTATTGCATAGCATCACAGAGCTTAAAATC

a score=27629
s chr3           153196248 1801 + 160039680 TCTCTTACACT--TTCAGTGTTTCTGACTCTTGATGCAATGTAATTTCTTCTTCCCTTATGATCATGGCCATTGTGAACCTATACCTTTGCTTTTGAGTAAATTTTCATTTTTATGTGGCTTTAAATTATAGTGACTTCAACTGcaatagaaacatgggaaaaaaaatccaggaagggcagattcatgaaagaagaaatgtaaattaccaatatatatgcaaacatgcaatttccatagtaataa-attagatgccaatt------aaaagtcaatttctttgcatatatgaagttggcaaggatgaaaaaaaatgCCTTTATTTG-AAAGGTTCAAGAAAGCAAGCACTGTAGTATGTTGGTACAATAAAAGAAAAAAATCAGAAAAATGTTCAAAAATTCATGAACAGCAGTGTTTACCGCATAGACAAAATTGAGAAGGG-GAAACTGTTAGGTGGATTATCAAGGAATGTTG---GTGAAGATGGTTTAGAGGAATTTAATGATATCAGGAGAAA-----CACAATTTCTTGCTAACAAGACAGAGGCGGTTATAGACCACTACCACCCCATCCCCGTGC------------------ACACATAT---ACACATACAGGACAGTGTACTAGTGGCCATCGTATTTTCTGTCTTTTACATTGTGTCTAACAATGAAAACATATTACTT------AAATAATGAACAAAGATATACTCAGCAGTATATCTTCCA----CCGTCTGAACCCCATCCCTCACCATTTTCCCTGCTGTTTGCTCTGAGATCCTCGGGTGTTGG-GGCCTTTCCCGTGGG----GTCTCCTATTAGA----------------CGCTTTGGCTGAGCACTGACATTA--TCAGGCTCTTGTGTCTCTTGAGCCTACGTACATCGGCCTTGTCTCTGTTCCTGTTCAGGATCACTCAGTCTCTGAACTCAAATTGCACTTTTGAATGTTTTTATGTTTTTTCTTCCATATTCAGCAGCCATTCATAGCTGTGTGATTACAGACTGATTAGTAAGACATTAAATCCTTTCCCAACATTAGCGCCCTTTACTCCACCAGAGAGTGT---GTGACATTTCCCGCCTTCCTCAGGAGGGAGCAGAGCCATCACAATCAGCTTCCACAAAAGATGTCTAGGCCAAAGTGCAGCAATTTGAAGTAAAGCTGCCACTCAAGATAAAAGACCATTCTATGCAAATTCCA-CAAAAGATGTCATGGTTCTGGGGGAAAGGTGAGCATTGTGTGGAAAGTTTTAGAAGAATATTCAGATTGTCAAGTGCTTCCCTGGACATGGGAAATGGTGCTACTGAAAGCAGTTCTCAATTATGAGTAGACAAATACACGGTGCCTAGTGGAAGGTGCTGGCTGGTTC--TGTGCATCCAAGGCTGGTAT-AGTCAGGAATCACAGCCCAGCGCACAGAAATAGGGATGCTCCCACCCTGGTTAAAGTGAACAGTTTACTCCTGGGTACCACCAGAGCATCCCTTATTATGGATACAGATCCTAGAATAGGCCCCTCTCATGTCCTCCACATATACCAAGTGAC----ACCAGGCACTGCAGGTTCCTATCC-----AAAGATTTCCACCTCTTCTGaaaacaaaaaacaaaaaagaaacaaacaaaacaaaacacaacCCCCTGCCTTTCCTGCCCCCCGACCCCCGACCCGGCAAACATCTGCAGATTTCTTTCTCCGATTCTTTTGCTTTTAGAGTTGCAGCTAACCT--CTCCTGGGGAAACGAAGATTATTTACAGGCTACCAC-TCAAGCAC-------TTTCCTGCAAGACTACAGAGTGCCCTGTTAGGCGAAAAAGAACACGAGATGGGATGCAAGATTCTATTTATGTTAAGGGGAGAG
s HiC_scaffold_1 140045511 1725 + 233722169 TCTATTAAGCTGGTTAAATGTTTCCAACTCCTGGGGTAATATAATT-CTAGTTCTTTTATAATGGTGGTTGATCTCACTATAGTGCCCCTCTTTTGAATGAATTCTCATTTGCTTACATCTTTAAGGTATGCCAACTCTCAGt---atagaaaaatgg---acaaaatatataaaaagta-attCATGAGGGAAAAAATGTAAATTGCCAGTAAATATGCAAAAGTTTAATTTCCATAGTGATGCCATTAAATGTTAGTTTTAGACAATAGGC--TTTTCTTGCACATATAGAGTtggcaaatatgaaaaaaatttgccaTCTTGGCAAAGGCTTAAGACAGCAGGCATCACTGTATGCTGATGTCATGGAAGAAAAGAATcagagaagttttaaaaaattcatgaacaaaactgtttaccATATAGAGAAAAGTGAGAAGAGAGGAGATGTTAAATAGATTATAGTACaatgtagcttttaaaaatattttaggataattTAAAGATATTCAGCAAAAGTACTTACAGTTTCATTTTAAGGTGACAAAGTAAGCTATGACACATCatcatataatgtatatattattaataatatttttagaaaaatattagaagaatACCAGGCAGTATGATACTGGATATTATAGATT-TATCTTTTATGT-GTTTCTAGCAATGAAATCATATTACTTTTAGTtagatattaaatgaaaataagtttttaaGGA---CTTCCAGAAGTGGTATGA---TCAGTCCTGATCA------CTGCTTTTTTCCTATGTGTCTTAGGGTATTAGTGACCTTTTTAATGTGCTACATTTCCTGTTAGAGTTCTACACCTCCAAATATTCTTCATGACTATTCCTATTAATTCATTCTCTTGTCCTTGTTGAGCCTGTGTGTTTC--------TTCTGGTCAAGTTTGGCTCCACTGAGCT------CTTACATCATGCAATTGAGtacttct-tatttttctgttgctccACAAGAACCTTGCATGGC---------ATAGAT------------------GCCCTCATTCAGAACTAAAGCCTTTT-CTTCATCAAAGAATGTAGAGTGGACCTTTTTGATGATTTCAAAATGGA----ATTCTTCATTATCAGTTTCACTCAAAGATATTTTGATCAAATTGCTTCAATTTGAAGTAGAATTGCCATTATAGATGAAAGACCATTCAATATAAACTTAACCCACATGTGTTATACTTCTCAAGAAA---TTTATGTTTTGTAGAAAATTCTGGAAGATTGTACAGACTTCTAAGTGATTGCATAAGCAT-GGACATTGtgtgtttaaaaagttttatcaATGGTAGATGCAAGAATTCTCACTGTATGGTGTAAGGGGCT-ACTGGTATAACTTGCAT-----GCTTGTATCATTGAAGAAATTTAATCATGTCCATAAGGATAATGAGGTTGCCACTCTGATTA-----ACCAGTACATTCCTGTAAAGCACCATGAGA-----TATTCTTAACACCAG--CTAAAACTG----CAATAAAGATATCCACATCTATGCAGTTACTAATACCAGGCTCTACAGTGTCTTGCCTTTATAACAAATTTTACATTGatctggaagaaaa---------------------------------------------------------------------taaacactGACAGAATCTCTTCTC----TATTTTGCTTTTAGAGTTCCAGTTAATCTACCTCATaggtatatttaaaaaatttataagtgAACATGTAAAGCACTTTTGTTTTTCCCATGACAGCAAACAGT-TTCTATTAGGTGAAATTGAACTTCagc----ataaaaaaatttatttgcattAAAGGGAAAG

a score=203902
s chr3           153198089 9061 + 160039680 [encoded data, 9956 characters]
s HiC_scaffold_1 140049404 9090 + 233722169 [encoded data, 9956 characters]

a score=4874
s chr3           153205386 186 + 160039680 TGGTCGGGAAGCACGGCATCAGGACAGCGTCCAGTTCGGGTGTGTGAATACTATTCTGTGCTTCTTGGCCCACTTGGCAAACACTTTCTTCTCGGTGATGAACCTGTGTCCCCCATACGGGGCATGTTCATGGAGAAGATATTCGTTACACTCATCTTTC---CCTTGTTCATAGTAGTGATAGGGGAC
s HiC_scaffold_1 187043601 187 + 233722169 tggctggcaaTGGCAGCTACTGGAC--CCTCCAGGACGGATGGGCGAACACGATCGGCCTCTTCTTGGCCCAGCGTGAGAACACGGCCTTCTCGGTGATGAAGCGGTGGGCGCTCCGTGGGGCGCGTTCATGTGCCAGGTACATCTGGCACTCGTCCAGCCGGCCCTTCTCGAAGTAGTGATAAGGCAC

a score=5314
s chr3           153206607 135 + 160039680 GCGATCTTACTTGCAGTAGGTTTCATTTATCATCCCGTAGACGTGGATACTGTAGCAGGCATCCATAGCCAGGATAAAGGTAAACCAGCCAGTGCTGAGGTAGGAGCCAGACTGGACTCTGGAGGAACAGAAACA
s HiC_scaffold_1 187044677 135 + 233722169 GCCACCTGACCTGCAGTAACTGTCGCTGACCATCCCATAGACCACGATCTCCTCACACAGCTCCAGGGCCAGGATCATGGTGAACCAGCCAGTGCTGAGAAACGACCCCGACTGTCTCCTGGGGAGACAGGGACA

a score=74445
s chr3           153211603 3371 + 160039680 TATACTTACGACAGTCAGTTCCTTTGAGACCTGACCTGATT-----TGTTTCCAGGTAGACA-----GTTCATACTAATTAGCCCCAAAGCCTTCCTCAACATTATGTGTTGTGTTTGAT-CTGCCTGGGAGAAGAGCTC-CACTGCCCTAGTGCCCTGTCCTACAAACAGGGCTTAATTAGGTAGTGACATTATCTCTCTTATCA-TCTCTGGTATTTTGAGCCTTGAAATGTCATGGAATTTCCTACCTATAGTAAATGCTAAGGTTTCCACAAGGGTTTTTCCTCAA-ATACTCAGAGTTAATG------TTTCTCTGAAAT---GTCCAACCTGGAAAAGTACAAGTGCTAGCTGAGCCCAGGAACTCTTCCAAAATGACAGCCCAGAGGTCTGAGGTCTTAGAGcaatgcttctcgattttcctaaatgctgtaaccctttcacacatgttcctccttctgtgatcccccccccgcaaccataaaattattttatcattacatgctactgttacaaatcataacgtaagcatatggtatgcaggatatctaatatgtgacttccaaaggggttgtgacagattgagaatcTTGGCCTTGGAGAAACTCACTAGCCTTTGGGGGCTGGCTCTGGTAATTCATATAGGAGTGCCACTTACATGCCCTCCATCTGTAGCATGATATGTATGAACCGAGTGTAAATCAGACCTGAATAGACCT-TTATGGTTCAATATTGACAACAACAACAACAACAAAAAGACAATAACTGGTGTACAGGGC-TTATTCATGTCTT--AACTCACAGAGGTCTGG-GATAGATAGGCATCCATTGCCTT-AGAACTTCTTAAGTCTCTTC-AGGGACACATATGACATTACAGTTTGTCACTCATGTGCACAGCACTACGGACCAGGCTGGCTGGCCTTCAGCCATAGCAGTGTAGCCAGCTCCCCATATTTGGGGATCGATAAAAACAATTATCACCATCTACAAATAAACCATCAAGTTTCCCACGGGGATGATAA--AGGAATTTAGACCCTGATTCAGTCTGATTGGGAAGCTTAAATTAATGCTGCAGAATAATGAGGCATGCAGAAGGAAAGAAAGGAAAGACGGTTACCAGGAAGCTATCAATCATGT--TTCCACTGGACAGACTCTGCATCCCTCTGCTCCTTGGTAATCAAGATACTTACAGTGTGGAAGCCA-CTAAATGGACTTGCTCATCTCTTAGAAAAATGATTCTGTCAGTGC--TGATCTAGTACATGCTGGAAGGCATACCACTTAAAACAT---CTCTCCTCTACTTTATTACTGATGAATATATAAGCCACTTTCCTCTTTTATGTTCTGCTGTTACTTGTTACCTAAAGGCCATGTCATAAATAGATGGCTTGTTATCTGTCAAAGTATTATTTACTTATTTATTTTCACAAATTTCAATATTTTTGGCCAT-AGCAT-CTTTCCTTGTCTGTGTCTCTG-----------ATCTGTCTTTTCATTTCTGGAGACAC-TTGTGATGAACTTT---------ATCCTGT--------------------------------TCTGGATACATTCAGTGGAGGGACTGAGAATTCCAACAAGATGATTCCTCGAAAGAAAACTGGGTAATGTTGAGTGTCTGATTTCTTTCTTGCTCAGTTTCCTGGACTTCCAACACCATTGCTTCAATGGCTTAGGTTTTGAG---AAGAAGCTGACATTCTGATGGAC------------CAGTAACTCTCTCTAGGTCAGTCTTGGTG-CACTTTGGATGACAGAGTTCTTTGTGTGGCAATGGCTGGG-----------CAGCCCTGTGTA-GTTTCACTTCTCATGGTCACAGGTTTTCTTAAGAAAACAGCAGacacacacacacacacacacacacacacacacacaACCACCTTCTGGTTTAGGATA--------------CTCTCTGGTTCTAAAAGGCTGAGTACCCCTGGGAAACAGTTTCCATTCTGCCTGATTCCTGTTCCTCTGCCACCTTTCAGATCCCAGCCTACCATCCTGCTTTGTCATCCTTTCCTGACAAGGCCATCTGAAGCCACTCATGCTTGACCAATGCTGGATTCCTGTCTGAGCTTTGAACGTCATCCTAGGAACCATCATGTGCAGTCAGACTAGAGCT-GCGGGAAACATCTTGGTCTTCAGTGGGGAATGTGTATGGAGGAACAGAACGAGAGTCAGAGGAGTACATACGGATGGAAGA--------------------CAGAAGTGTATTGGAGCTGCTTCAGCTCCT-GAGTGACCTTTGACT--AACTCTGTGGACTCCATTCTACTTCATCTTATTTCTTCCATGAACCAATGAAAGCCAAGC-TGGGGCACTCAAAGCTAATCTTTCAAAGGCATAAAACAGCTCTCCTATTGTTTATTAAAGC-TGAGCAAGCTCAAGGCCCTTCTTAGAATG----------GGAGAGCATGCTATTGCCTG------------TCTGTTATAATTAAGAGCAAGGGGAGAATTTTTTTTAAATTACTGATTAATCAGTATTTCATGTCTTGTTTTAACACGGTTGAATCTCAGTTCTCTCATCAAAAACCTATA-TGACAGGATAAATAACAGGACC--------TTTCCAGATACTTTCCTAGAAAGAAGAAATAGATTACAGAATACAGATTATTCAA-----AGTATTATTAAATACTCCCATTCCTTTCAAAAGAACACAGCAAATGAA-------ATCAACAACAAAGAGCCTTGGCAAGCAAGCTGGCTT----CCATCAGCAGTACCCTGGGATCCAGTCTGCTGCCATGAAGCCAACCTT------------CTCTGAATATGAAGA---TGTCGGCTCTCTGTAACCTGTACAGACTTATACATGGCTCCACAGTCTGAATTCGTGGAAACGGCAAGGAGTTTGC------TGTTAACACTGGACATCTGTGCCCTCCATCCATGGGATAGGCCCAGCA--CATTCTTAGGTGGTAAGCTTTTACTACAAATCAGGCAGCAGGGTTCTTAGCTTAGGCTTGAATCATTTGCAAATGGGTGTAAACATTTCAACTGGATAAAAACATCATCTCCTGGTTGGTAATTCTTAAGTGAATATACCAGGTTAAAAAAAAAAATCCAAGGATGCAAAATGATGATGAATGGACCACAGGTGAATGGAGAAGGCAGTAGTCAACCTCAGAAGGGGACTATGCTCCCC--CTGGTCTGACAGTGCATAGTGTCCATGCTTATCAGTACACACATAGA------------------------CTACCCT-GAATCAG--GGGCCCGCTGAGTAGCAGTGACTGCAGGAACACTGTACAAATGAAGCAAAA---GGAATG-CTGTGTTGTTTTCTAAATGTACATTTAAAAGTAAAATGGTAAAGCTC--AAAGATATGATTTATAGCTGCTGTGGAAACAGAAGATACCCCTCACAAAAATTACCCTGTTCATTCATCTCAGAAATTAAAAGTTTATTTTGTTCTTACTC--AGGCTTTAATGTTCTTTCAGTAGGAAATGCTGATTTCTGGGGTTCCATT
s HiC_scaffold_1 140062735 3247 + 233722169 TACACTTATGACACATGATTCCTTTTAAATCTACTCTACTTCATTTTGTTTCTGGATAGACACAGCATGCCATACTAATTAGCCCAAATGCTCTTCCAAA-------TGTTGCGTTTGATTCAGCCTGGGAAGGGGGCTCACACTGCCTATGTGTCCTATCCTAAAGCTAGCACTTAATTGGACAGCTGCACTGCCTTGCCCTCAAGCCTCTGATATATTTGGCTT----ATGAAATGACATTTCCTACCTACAATACATGCTGGAGCTTTCAGTGCAGCGTCTTCTCAAGATACTCAGAGCTATAGAGATCCTTGCATTGTAATACTGGCTAATTTGGATTAATGTAGG------------------ACTTTTTCAAACAACTAGCCCAGCGATCTGAAA----GGAGCAC---------ATTGGCCTGGATACCATGGGC--------------------TCTGGGA---------------------ATTTTTTTGTAGTTG-----TACCCTTTCCAACCTTCCC----------------------------TGTGTGGCT---------------------------------------------------GCCTGTGTGAGCTAG-------------------------------------------------------------AGATGAGTATAAATTCTGTCCAAGCAGAGCTGTTAAGGTTCagta------------gaaacaacaaaaagatga--acTAATGTTCATGACATTGTTTATACTTTTCAGTTTGGAGAGAACTAGTGATAGCTAG----TAAATGCCTTGAGGAATTCTTA-GTGTCTTCTAGGGTCAAGCATTGTCTTGTAATTTGCTGTTCACATGCATGGCACTGTGTA----------------TTAGCAATAGCACTCTTTATACCTTCC-ACTTTTGGGGATCGATAAAAACA-TTattgtcatccacaaataaaCAATTAAGATCCACATAGGAGTTATAAGCAGAAGCTAAGCCCCTAATACAGTAAAATAGGAAAGCTTAAATTAATGCAGTGGAATAATGAGCCATGTAGGGGAAAATAAAGGCAGGAATGTTACCAAGAAGTGACCAATCATGTGTTTCCACTGGCCAGGCTCTGCATCCCGCTGGTCCTTGGTAATCCAGAT---TACAGCTTGGAGACTAGTTAAATGGACTTGCTCATCTCTTGGAAAAATGATATTGTCAAGACCTTGATGTAGCCTATGCTCAAAGCCATGTCACTTAAAATATGATCCTTCTTCTAGTTCattatggat-aatgtacaaactACCTTACCCCTTGATGACCT-CTATT-CCTGACCTCTGAAGGCCATGACATCAA----------GTTATC-----------------CTTATTT---TTAATTACTCTTAATGTTTTTGATTGTTAGCATACTTCTTTTGTTTGTATTGCTAGTTATGAAtatattctttttctcatttctggaaATAAATTGTGAAGCacttttctcttcctatcttGCAAGCTGGACCCTTCTATGAGTGACATTTTCCCTTTGCATAATTTCAGGAAAGTTACTGAGTGATCTGAAATGGTTACTCTTCAAAAGAAAATGGGATTATATTGAATACATTATTCACAGGATGCTCTGCTAATTA----TTCAACACAATTACTTTAATCACTTGGATTTGGAACTTGAGAAGCTTATACATTGCTGGACAAAATAATGGTTCAGGGTTTCTCACT--TTCAGCACTGTTGGTATTTTGAGTGAGTTAATT--TTGTGGGGGGAAGATAGAAGTTCTATGCTCCTGCCTTTTGCATGTTTTTCTCGTCTGAGTCACCGGGATCCTTA-GAGGACAATGGATTCCTTGACTCCCA-------------------AGCCTGCTTTTAGCTTTGGGCAGTTTACTCCAGGGCATCCCTGACCCTAAAAGGTCAGGTTCTCCTAATCTACAGCTCCTGTTTTTCCTACCAGCTGTCCCTCTGCCTTTCCTCA---TCCAGCCTAGCATCTTACTTCTTTCTCCTGTCCT-CCAAATCTATCTGAAGCCTTTCAAATTTGACTAATACTAATCCACTGTCTTGTCTTTCAGCA-CATCCCTGGAATCAGTAAATTCCCTTGGGATATACCCAGAGGGCAA------GATCTGCAATGGGGTAAGTGAA-GGGGAAATGGAA---GGGTCATGGGGGAACA--AGGATGAGGGGTTCAGTACTTTCAGTCTCTGCAGCTGCATGTTTG---TGCCACAGCTCTTTGGAGGGCCTTTGGCTCAAACTTCACAGTCTCAGTTCtactgtttctcatttctttcatgaACCAATGAAATCTAAGCCTGGGGCACTCAAAGCTAACATTTCAAAAGCATAATAAA----------CATTTATCAAAGCCTGCAGGGGCTCAAGACCCTCCCAATAATGAAGGTTTATTGGAGAGCACAATATTGGCAGCAATTTCTAAAGTCTGCTACACTCAGgagtaaaaaagaa-----tttaaaaaaaagaattaatcaaTATTTCATGTCTTGTTTTAACATTATTGGCCCTCAGCTCCCTCATCAATATACTACACTGgcaggataaataaaaatagcaaagtaaGTTTGCAGATATCTTCCTAGGAAGAAGGAATACCTGGCAGAATACAGAttattcaattaaaaatgttttt---ccccctgtttttttttaaaagcacatggATAATGAAGGAATGCATTTA-AACAAAGAGACTCTGCAGGAAAGACAGCTGATGGTTATCAGTAGCACATTGGGATTCAATCTAATATTGTGAA-CCGGTCTAATGGAAGCAGAACTCAAAGTGTGGAAACAATTTCAGCTGTCCTTGAGCCATATGTTATTATACATCACTTGATACTCTGGAGCTATGGAAATGTTCTGGAGTTTGCCCATTATATTAACACTGTATATCTGTACTATCTATCAATGCGATATGCTTAGTAATTATTTTTAGGCAGCAACAACTTTCTCCAAATCAGGCAACAGAATTCTCAATTTTGACTTGAGTCATTTgcaaatggacaaaaaaatt-aaaatggataaaGACATCATCCTATGCACAGTAATTCTTAAGAGAATATACAG----AATGAGGGAAATCCAAACTtgggaaataatgaaaaaaagaccaTAGGTAAAT--------------------CTAGAAGAACATTGTGCTGCTATGCTGATTGGTTAATGTAAAAAGCTTGTGTTAATCAGTAGGCAATTGGATTGTGAATATAACAAATTGTTTTCCTGCCATAGAATCAACAGGACCCTCTGACTAGTGATGAATGCAATGTAATTGTACAAAAGAGGCATAATAAGAAATGATTGTGTTCTTTTCAAAACacacatttaaaagtaaaatggtaAAGCTCCTAGTGGTATGATTTATGGCTGCTGTAGAAATAGAAGATACCACTCACAAAAATTACTCTGTTCATTCATCTCAGAAATTAAAAGGTTATTTCATTCTTGCCCTTGGGCTTTAATGCCCTTTCAGGTGGAAATGGTGGGTTCTAGAATTCTACT

a score=50447
s chr3           153225639 2853 + 160039680 AAATCACAAA-GTGTAAAATGGGAAAGAAGTGAAAAGTTTT------AAGGAATTAAGAGCATTCAAACCTTGCT-CTGAGGAATGGATGTTTTCTGGTTTCTGCAGCAAACACTTGTCTGTAGTCGCAGGTGACT--ATTGTGGGAACAGCCTTTATGTGCTTCCAGGTGAGACGTTGGAACTGAGAAACTACACGCTGTGTTAGACACAAAATCAATACTGTGTGATTCAGCCCCAACAGCATGCCCCAGCTCTCTCCTGCATCAAGTATTGCAAGAAAG-GATGCAACAACAAAATCAAAATTTTCTCTAATCAAGGGAAAGGAATGATTTTTAGCTTTTCAATCATCAAGAAAGTCAGAGGAACTCGGAGACCGTTAAAATATTGAAGCCATGC-AGATCTTAATTTCATATTACAGCCTCACATG----AAAGAACTTCATTTAATTATTT--ACTTCTACTTTGTGCAGCACTGTAAATACATCTGTTTTTAATAAGTATGCTAAACACTGGTCTAGATCTGTTAAGCACAAGGATCTATGGATAGATGGATGGGTGTGTATATATTGGGGGGTGGAAGGGtggatagatggatgggtagatgggtaagtggatggatgtttggttggtggatagatggggggatgaatagctgaatgggtatgtggatgggtaggtaagtggatagatggttgaataggtggttaagtggattaatgagtggatagatgggtgggtggatggatgatggatggatggGTTGATGGAATGAGATGAAAGAGCTTCTATGAACTAAGGAGACACCTGAGGTCAAGTAGCCAGAAGGAATGAGAGCTAAAAACTTGGTTCCTTAGGTGACAACTTATAGGGGCCACACAGTAGGCTGACAGAACTTGCAATGATGGTTTAACTGTGTCCTTGGAACATCCCTGTATATCTTTAGACACACCAGAGACTCTCTGTTACACCATCAATGAGACTATATCAGCTTCTTATTTTTGGCATCTGCC----ACACTGTAGTGAATAACTGGAGGCTA--TAAATCCCAACCACTTTTCCCTGTTGTCTTAAAAGAAATGCATCTAGTATTTGACCAGAAAATTGCCTTGTATGCAGTTTGTATTTCAGACACAGCTATGTTATCCTTAATTTC-------------------------AGCAGAAATAAAGAGCACTTTAATAGCTTACTTGTTTCTTGT----------------AATCCCTTTGAATATAAATATGTTAGTGTTC-ACACTTAAAATGTCAAGGT---------CATTATTATAGCTTGTGAGTGATGGGGC-AGGAGAAATACAAGCAAGGCTTGTATACACAAGGAAAAAGGAGAAAATTCACATATCCATCGCCTGTATCACACATATATGGATGTGTATGTGTGTTATGCTCACCTGGAAAACAGGGATTTATTTTTTCCTCAACTCATCTACATGTCT--CATTTTAGAAACACATCTGTTGCACAAAGACAGGATGAGCAGCACGCATCTG----------------AACTTATTTAACCAACAGTGCACTCC-TAACGAACGCCTAGCGCATAACAAGGGGCTGGTGCCATGCCTTTCATTCTGAAGTGACTCCTTAGT------AGGAAAGAAGGCACACAGGCACCTTTGTGTGCTTCTGTGCCTGGACCCTTGGAG-GACCCATGAAGTACTTTGTCTGCCATAA---GGCTTCTATGACCCAGGGAGGAATTATTTTCAAAGTGGTCTGGATACTCGGATCCCCCCGCCCCACAA-AGACCAGAGATGTCAACTGCCCTTGCAGCAATGACTCAAAGAACATGTTCT-AAAACAGGATCAATATTCTTCAACTCTGTTCCTGGAAGGTGAGTACCCACAATTCACCTGTCTCTGTTGTTTCTTTCCCCCA-GCCTCTGCCCTTGTCGCTTCGTGTTCTTCTCAGCGTCAGAGGCTGTGTGCCCAAGGAGAAGCTCTATCCCCCCGCCTGGGATTCTATCATTTTCTGCTTCCCTGGCCTGACTTTGGAGCTCCCCTCTTCTTACGTGAACTCTAGTGACAAAGTGACAAGAGC-AGGAGTGACTGCCTCTGGGCAGAGTGAACCGTGTGCACTGTTAACCCTCCAGAGCAGCAAACATTTGTGCTTAGCCATAGTGAGGGAAAAACGGAGGTGCTTGGTACCTCACCAGT-AAGAAAACCAAGCCAGCCGGGGATTCTAATTACAAGCTCACTGACAACCAGGTGG-GCTGTGCATGTGGTTCATCTCTCTCTTGGCTATTTTATAG-AAACATTTCACATTTAGAGAATAAAATCCTCTGTGGCCATTGGCATGCTGCGCATAAGTTGTTCCTGAGCCCAGAACACTATGAGGTATTTTCCATCCCACCTTCTCAACCCAGCCTCACAGGGATA--CAGGACTCTAGAAAGAGACA----GTGTATAGAGGCAAAACCAATAGCACAACAATTCCAGTATC--TCACAGACTCAATGACAAACTCAACTACAAA--------GTGCACCAACCAGCAGTAGCATCTTCCTCTGTGTGTGGGCG-GCTCCTCTCCAGGTATGCATGGCTGACCTCACACGGGGAAGGCTGTTGGCATAACACTTGATAAGCCCGTAAGGTAGAACCCCAAGCCAGCGTGGCATGCTGGTAGGTGTTACAT--AGGAG-GGAAAGCAGGCAGTGTTGAGAA-ATAAGCTTAGTAAGGGTGA----CTTTCTTGACTGATGGGGTTCTCAGCATCTTCCTATAGACTAATGAACAAGAGAGTCTACAAAG----AACACACTCCATAACATTTCCTTCTGCTCTTTCATCAG--GGAACTTACCCTTTTTCCATCACCATTCTCATGGACTGACCTTTGGAAGAAGACTTCTCTGGCAGACTGGACTGTTGTCATT----------TTTATTTTTGATCACTCTTGTTATTTTAGTAAATAA-ATGTA
s HiC_scaffold_1 140071307 2608 + 233722169 AAAACATAAACGTGGAAGGTGGGGAAagaattcaaatttttttaaaaagaaaaaaaaaaaaattgaagcacTGCTACAGAGAAAT--ATACTTTCCCATCTCCTTGCCCAGTAGTCTCCC--AGTCACAGGTTACTTTATTGGGGAAACAGCCTGCATGTATTTCCAGGTGAGGTGCTGGGACTGAGAAACTGCTCTCTGAGTCAGACACAAAATCAATATTGTTTGATTCAGGCTCGACAATTCATCGTGGCACTTTCCCACATCATTTCTTTCAAGAAGGCAATGCAACAGGAAAATCAGATTTTTCTCTAATCAAGGGTTAGGAGTGATTTTTAGCTTTGTGATAATCAAGGAACTTCAAAGAACTTGGAG-TTGGCAAAATGCTGAAATCATTCAAAATCTGATTTTTGTATTGCA-----ACATGCTGCAAAAAtcttcttttgattattttgatttttaatatgtacaAGACTAGAGAAACAACAATACTTAATAAGCTTACTAAACACAGGCCTAGGATTATTAGGTGGAAAGATCTCTGAATGGATG---------------------------------------------------------------------ATTTAGTTTATTAGTA---------ATTAATTTCT--------------------------------------------------CCCAGTAATTCACC---TGGATAAATGTCC--------------------------TTATTTGAAGGGGAGGGAG-------TATGGAAAAAGGAACCA------------------------------------------GTTTCCTA------------------------------CTGA------TTGCCAT-----------TGTTTTCCTTTAACA------TACAGCTTT--------------------------------------------------CTTACTCTTGGCATTCATTCATAGCATTACAGAGAATAACTTAAGGGCATCTCAATATGAGCAGTTTCTTCTTTTTGCCTCAAAAGAAATGCATCCAATATTTGATTGGAGAATTGTTTCACGTGCAA-TTGTGTTTTAGGCAGAGttagattattttcatttttaggttTTCCAGCATATGAAGAAAcaagtagagaaaataaatac-ttattagGTTAATAATTCTTAGtacaaataattagaaaaaataattcttagtacaaaaatattaatatttgaaatttaatatgTTGAAATATATGAAACTTTTATTACACCTTGAGAGTACCAGCACAAGAAGAGGTAAAAGTTAAG-TTCTAGTTGTAAGAAAGCATTGAA------ACATATTTATTGTTTA------------AAGGGTG---------attttatacaaatggaaaaca-gGATTTAGTTCT--CTCAACTTAACT-TATGCCTCACATTTTAGGAGCACATCTGCTGGAAAAACTAGGGGCTGGCAATACGTATGTATCTGCGTGACACATGCCACACATTTAATCTTCAA-GCACCATGCAACTAGTGCTTG--GCATGACACAAAAATTGTCTTCCGCTTTTCATTGCTAAGTAATCCCTACATCAGCAGAGAAAAGGCAGCATATAAACATCTTTGTGTGTTGTAGTGCCTAGGCCCCTGAGGTGATCCATGGAGTATATTGTCTGTAACAGTTTGGC-TCTGTGACTT--GGAGAAGTGGTCTCAAAAGTGGCCTGAACACCCA-----CCTCTCCCCTTAATAGACCATCATTACCCATCATCCTCTTGGCGCTGCTTTACAGAAAGTGTTTTGAAAGCAGGGTGAATGTTCATTGACCCTCTTCGTGGGCTCCCTGGCCCCACAAGGCACCTTGctttgtccctccctccctctagGCCTTCCTATTTGTCACCTCACTTTGTTCTCAGCACTGAGGACACCAGGTCCACGGAGAAGCTTGATTCTCCTGCCTAGGATTCTATCATTTTCTGCTTTCCTGACCTGACTTTGATGCTTCCCTGTTCCATGGTGAA--------GAGGAGTGACAAGAGCAAAGAGTTATTGCTTCCAAGCAGAATAGGCTGTCTGCACCGTTAACCCTCTGGAGCAAAGAGCAATCGTGTTTGTGCATAGTGAGG--AAAATAGAGACACTTGAAGCCTcatcaggaaagaaaataaagccaacaGGGGAATTTAATTATAAGCCCACTGACAACCAGTTAGCACTGTGT-TGAGGCTCATTTCTCTCTTggctattttatagaaaatatttcaaattaagaaaataaaatc--ctgtgATAATTCCCATG--ACACATAAATTGTTTCAGAGCCCAGAAAAATATGGAGGGCTTCCCAATTCATATTACCAATCC-TCATCACATTGATAATAAAAATCCAAGAAAGAGCCAAAAGGCGGA-AGAGGCAAAA--AATGACAGTACATTCTCATTTATAATTATAGGCTCAAAAAC--CCTCAATTAAAGGCTGATTTTTTGTACTAAATTA----AAAAGCCTACTCCATGGCCAGGCACGGTCTAGTccagaaatgcaagaaaaatttaatataaggagAGCTATTAATGTAACACTTTCCATGTGTATTAGATTGACCTCAAAG--ATGAAGGGATACTAATATGTATCATATGAAGCAGAGGAAAACAGGGAATGCTTACAatgaaaattcaacaaaattgACTGCCTTTCTTCACTGCTTAACTTCTCAAGATCTTTC-AGACACTAAAGAGCTAATGAATTTACACAAAGACAATATGCTTTGTAGCATTTCCTCACATTATTTGACCAGACAAAAATTACCCTCCCACAATT-TCTTTCTCATGGACCAGAGTGTGGAA-AAGTGTTCCCTAGCAAACAGATCTGATAGAACTTAtgaattcatttaatttatatCAATC-----ATTTCAATAAGAAACATGTA

a score=51262
s chr3           153234362 2423 + 160039680 ATTGCTTCCTGAGCCAATGGTTTAAATGCTTTTACTCTTTAATTACATCTTTGGAACCAAGACCCAATGTCCCAATTTCTCTATTGATCATAAAATAACC-CACACTTCCTTTAAATTACCT-GCTCATCTCATTTAAGTCTTCCTAGAGCTCTAGTAATGTCCTAAGGAACACTAGGAAATAAAAT---GGGAAAAGAATCCAAGGCGGAACGTGAACCTTCTGTTTACCTGGCAGAGACGTCTCTGTAGGGTGTGTACCAGCCATGGTGCACTGTGTGCATTTTGTAGACATCCCTTTTCAGGAAAGTGTTTAGCAAAATGGCATTTGGAAAAATACATTAGATAAATGGCTTCTGAAGTAGTGTTCTAATCTAATTATTAAAGCCAATCCATATTCATAAGTTAAAGGCTGGCAAAAATACTGCTTTGGTGCATTTATTTTATAATAACCTTGATGTGTTCTACAATGTCCCAGCCAGACACTTCAAGGCAGGCCCAGCCTGATTCAGTCAGCACAGTGAAGCACTCGTGGGGTCAGGAGCGCCTCACACACTTGCTGAGGCAAGCATAGGCATGTCCTGGGAGCCAACACTGTTTGAGGGGAAGGAGCAAGGGAAGGTGAGCAACAATCCTGTGTTA---------------TCAGTTCCAATCAAGTTGTGTGTACCCAGAGGTGGCTGGAATACAGACAGGAGTAAGGCTG--GTATGA--CGTCACTGGAGACAGGAGAAAGCGATCTTGTTTCTAGACTGTTTTCtctcagtctgatacccaggttgctgtagcaa-----------------catgtcttaggaacaacagccatttatttttcaaaaatctat--------ggttggaggtctatgtgcctg-atctctgtgctttagtaagggctttcttcttcagtgtgcacactgctgacatcttgtagtgtccttccatgctgagatggaaaagaataaagaaagctctctcttcattccaaagacattactctcactcatggcagggGTGGGGTGGGGCGGAGCTGTCTTCCTTTATTGTACATCTAATCCTAATCCTATTCTAATTCTTTCCCAAAGACCTGACAGCCTCATATGATAACTTA--------------ATGATAAGAATTTTGAAGGTA----GAAATTGAGTCTATAAGATATACCTTAAGAATTAACCTTTGCTCCAGAATTCATTTTCATGGCAAGTTATTTCTGTTACCACTA--GGTAAGTTTTCCAGTATGAGAGAATAGACAGAATATATACGATGTAAAATTGTAAATTCTGAAAACTA--TTTTAATGATCATGATCTCATTGATAT-------GCAATA----------GCTGAAACG-------------------------------------------ATGAGAAACG------------ATGGAGCAATAAAATAATCAAGCAACCTATTTTATTATAATTGCTAAGATATTTCAGGTAAGTCTTCCTTTTAGAATGAGGGTAtttttttttttttttttttttACAGAACACTTAGCTCCTTTGCAACATGAAATGTCGGGAATACTACCTTTACAACTGGCAGAAACACAAAAGCTTCTTAAAAATTTCAAGAAATCTTACAGAAACCTTTCGGTTCTTTGCATGCGGAAGAGAATTAC--CAAGGAATTTATTTTAATGGGAACAGCTAATGAAAAAAGAAATGAGAAGTATTAATAGTGTTTCTTCTATCAAATGTCTGGAAATAAACAATCATAAAATATTCACAAGGGGGAGAG--GTGCAATGAACCCACAGCCATGGGAGGAGGGCAGAGGCAGAGGAAGCAGAAGCAGCTGCATTACTGTGGGAAGTAAATATTTCAGA--------TCTATCAAGTTGTTT-CTCCTCCAAGGAAAAATAGAGAGATGCCTACAGCGTACTT------------TTTCTTTTTGGAATTAATGTTCATCTGAGCGCAGAAGGGGCGGAGGGCAGGTGTCGG-TGTAGTTGGAGAAACCTCCTCGTCAGGTCCTCCGATAAACGCTCGGTGAAAAGAGGCCTTTTTTGCGGATCTAACGGG--CGCAGTACTTGTTTTTTAATTTGTGAAGCAGGGATGGCAGGGATGAGCAGTGGAGAC-CGTGCTTGTCTATAAAGTGAAGCGGAATCTGAGTACAGCCACAATC---GGCAGAAGGATTAGTGGAGGTTTGATATGGCGCATTGCTTCCCCCTATCACTGAACAGACAAGAATAGATACAAAACCAG---TTTTTGATCCAGGAAGATTGCAATAGGATTAGAATTCATATTTCTTTCCCAAGACCTCACCATCTGTTTCTATTCTGAACCTGTGAGCAACACTTTGCAAA----ACATTTCCAAGCTCTCATGGGCTGAGGTCCTTCC-TCTGTACCTGGGCATAGCTCAGAGTTCTAAAAGCAGTGGGGGCAAGCATGGAAATGGGCGTTGAAG------AACGTG-GGATCCTTGCCCTCCCAGAAGCCT--------CCTGTGTGTTGAAGAAC---CATCTTGATTGAGAACACATTTGATAACAGCCCTAAACGTAATGCTTCTGTCC
s HiC_scaffold_1 140079662 2487 + 233722169 attgcTTCCTGAGTTGATTCTTTAAATGCATATTATCTTGA-----------TAAACAAAGACCCAATGTCCAGATTCCTTT--TGATCTGAAAATAACTATATACCTCTCACAAATtaccttattcattttatttaatttttactatttttccagTTCTATTCCAAAGCATAATAGAAAGAAAACTCAAAGGAACTGGAATTAGTGAACACAAAGAGCCTT----TCTCCTGAAAGAGAAGACATTTGAGGTGGTATCTTGGCTTTAATACATCTTGCTCATTGTATAGATGACTATTTCCAGGAAACTTCTCAGTGAA-TGgcatttggaaaaatatattaGATGGATGGCTTCTGAAGTAGCATTCTAATCTAATTATTAAAGTCAATCCATACTCATAAGTTGAAAGCTTGCAAAAATATTgctttaatgcatttattttgtaataacctcgacatgtttttaaatgtatcagACAT---TTTCAAGACA----CAGCAAAATGTACTCAGAGAACTGAAGTAC-CAGAGATTCAGAATAGATTTACATACTGGGTGAGGCAAAAGCTGGCATGCACTCAGATCCAAGATTTTTTagaggggag------aggaaaaagaGCAAGGATCCAGTCTTACTGGTGGCCACATGCCCAGTGCACAGCAGAATGCAGGTTCTCAGAGAAGGCTGGCCTGAGCATGGGGGCGGAATTGAAATATAactcttcatctgagaaagggGAATGCAAACCCA--TCTGGACTACCCTGTCTGGGTtg-------aggctgctgtaacaaaaacaCCATTAATTGGGCAT-TGCTATGAACAAAAGAAGTGTATTTCTGGTAACTCTGGAGGCTAGAAGTTTGAGATCAAAATGCCAGCCTAACTGTGTCCAGGTGAAGATCCTCTTCTACA---TGTAAATGGC---CAGCTTACTGGATCCTCACATGCT-AGGTAGCAGAGCAGGAAGCAAGCGCTCTAATT------AGGTCATTCATTCCAATTA-------GGTGGACT------------CTATCCTTGTGAGCTCATGTAATCTTA----------AGTATCACCCCAAAGTCCC-ACCTCCTGATATTAGTACACAGATGGTGAGATGTCATCATGAGAATCTTGAATGTACACCAACACTCAATCTGTAACATCTACTATAAAAATG---TCCTGTTCTAGGATAGATTTGAGTATCTGTCTGTTTCT----CAACTATTGATCAGTTTTCCAGTTTCAGATAAtgaagaaagaatataggacATAAAATTGTATACCCTAACAATCACGTTTTGGTGATCATAGTACCATTGATATCAGTCACCCAATAATAAAATATGATGGAAACGGAAGTATTTATCCATATTTATTAAACACaaattcacccttcccatgaaAAATGGGCTAAAAATGAAGGAagcaataaaataatcaaataaccCACTTTACTTTAACTGCTTGGAAAGTCCAAGTAATTCATCCTTATAAATTGA-AATATAGGTTTTACATGTAGCT-----AAAGCACTTAGCTCcttttcataatgaaaattttataatagt-TCTTTACAATAAGTCCATA-Gctaaagctaaaaaagaaaaacaagaaatc--ataTAAACCTTTCAATTATTCGTACAcataagaaaattacagaaaataatttattttaatgtgaacagctaatg-aaaaataaatgagaagtaTTAATGGCATTTCTTCTATCAATTTTATTGAACAAAACAACCAT-AAATACCCctaagaaaaaaagcaatgaaatgaacctataacaatgaaaaaa---cagaagCAGATAACACTAATAAAACTGGATTACTTTTGAAGCTAAATATTACAGCACTCAGGTTTTATCAAGTTACTTGATAACACAGGGAGAATTAGTTAGA----TACACTgtatttagattccacatattttTGTCAGAAAGTCAT-TTCATACACGTATGGTAGA----------AAGTGTTTGCTATTATTGAAGAAATACCGCAATCA-CTTTTCACTTAAACACTTAGTAAAAAGAACGCTTCTGTGTCAGTCTAACAGAGCCTCagcatttatttcttaatttgtgGGACACTGGC-GCAGGAAAGAGCAGTAAAGATGTGTGCTTGTCTGTAAACACACCTGACCCATGAGTGTGGCAGAGACCCGTGGAAGAAGGATTAGCGAGAGTTCGAAAAGGTATTTTGCTTTTTCCCATGATTGAATACAATGGAGTAGATATAAAA--AGGTTTTTTTCAACCAGGAGGACTGAAATAGGATTAGAATACATATTGCTTTGGCAAGGCTTCACCATTCGTTTCGCTTCTGAATCTGTAAATGGcactttgcaaattccatttCTCCTTG-TCACCTGGACTCCAGTCCTTCTGTTGGTACCTAGGGACA-TTCAACCTTCTAAAAAT--------CAAGGATGCTGTTGGGGAACCAAAGTATACAATGTGTGAATCCCTGCTGTCCT-GGAGCCTGACTGGCACCTGCTCAGAGAGAATCTGTCATCTTg-ctaaaaaattatttgtttataacTCCAAGCTGAATATTTATCTCC

a score=23744
s chr3           153237396 3405 + 160039680 GCCACTCCTGC--ATGCTTCTCAAACCCTGCTTGGCTGTCCCTGGTTAATGCTACAGCAGGCCTGAATCCCAGCATAGCAAGGCACCAACCTAAAACATAGGCTTCCTAACTTTATCGTAAATTTCCAGTCATCTAAATGACCCAAGTGCAAATGCTCTCGGTGTACGGTCTTTTGTTTCAGTGTACTACAACCCAGAGTCTCCCAACCCCTCACT-GCAAGGTTGCATATTTGTTCTTGGGGCTGACAAAGTAGGATCCAGTCCCCGGTCATCATCATGCCCAT-CTGGCCCCCACCCAGTTATCCCTGTTTGAGTTCG---------TTTGATC-ATCTGTCACACAACTGGGGACATTCAACTCTCCATGCCCGCCACTCTTGAGCCCTCCTGGATTCATGTCAGCCACAGGAAGTGGCT---GCTTCTCAGACCACGCTGGGTGCAGAGCAGTC----AGGGGATCTT-GCCTTCACTGC-ACTTCACTCCCTTTAGAGTT------ACAGTTTCAAGTCATTGTCAGGACACTTG----------------------------TCCAGGTTCTCTTGCTAGCCTGCTTATGTAGGCACAGCCTAGGGACTGT--CTTCCTGAGCCCAGCAGGGTTGTCATGACTCCTGTACAGCAGTTGTAAGCTGTTGACGAGTTTTCGATGTCCTAGAGACTACCTGCATTCACCATACATAGTAGATATAAGCTGTTCACTTACATCACCTGGTGGTATATAGTAGATATATGGTGGATATGAGTAGATATGAGATTTACATCACCTGATGAGCAGGTATAGTCTGCCTGCAGTCATCGCTCATTTGGAAGCTCACTCTGTTCACTGGTCTCTTTAATAGGACCAA-TGTCACATTTTAGTCCCCCCCCCCCATTAATTTGAT-CCTTTGAGAGATATCATGGTGGGTTAAATGTgggtcagagtggatgaactcagaccccggtgacagcctttactactggtgtgacaatggcctctctgaaccccactctcttcacctgtaaagagatactacagcaataataccaacagaggcata-aaagttactgcgaagacaaacagaattaatctatccagagcgcttagaacagtacctacaaaacagcatatgctTCCTGGCATTTATTTTTATCTTCTGGAGATCATTAGATGACTCACAGGCTAAGAAAAGCGCTAAGGAAATGCTAGAGAGGACGGAGCAGCTTGCATGGGAAGCGAGGTAGG----AGCACGCGCATTGATCTGAGTGTAAAACCCTAAATGCAGTAAGCGCGAGGAGCGGTGTGTGGGAGTGGTGGATGTCACTCTGGAGTCTGTACAAGTCCCAAGGTCCACCTCAGAGA---CAGCAAGCAGACAGAAGAGGGTAGGAGACAAA-------------------------AAGCCCAGAAGACTGGGTTCCTCTGC--CTTCCTCCTCTGGGA-ACAAACCATAGGGCTGGAAAAAACCTGGTTATCAGTGGTGCACTGTTTGGCAAAAGTAAGGCCAAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgtgtgtgtctgtgtgtgtgcgtgcacgtgtgtCAGGCTACACtgtgttagtgtgtttaggctcctctaatgaaatacttcagcctgggtgggtcataaacaacaaaagctatttatATGGATCTGTCTCATTTACTGtttgctgttttgag--acagttcacatgtagctcagactgaccttgaactcactatgtaa--ccaaggctgaccttgaactccagactttctggcctctatttccctgcgttggcattataggtgtgctaccatacccATATTACTTCCCACAGGATGGGAATCCTGATATAAGCCACCAGCAGGTTTGCTGCCTCAGCAGGTTTCTTGTCAGCCCTCTTCCTCTTAAGCGGTGTCTTCTTTGTGGCTGGATATGCTGGGGTTTCCTCCAGCCCCCTTTAGGAGATCACTCTAATCCTGGTCACAAGAGTTCTGCCCTATGACCTGTCTTCCAGTGTCCTGGATCTTGCTAGCATCCCCTTGGGGCAATGGGACTTTAAATACTTGGAGGGGGGTAAACATGAGGGCAGTGTGGGCTTCTCTGGGCTTCTTTGGAGGAGAATCTTCAACTCCTAAGTGGACGGAGCTTCC-ACCAGGAAGGGACGGAATCTAATCGCCATGCCTAGCACACACAGGGGAGCAGG------TTATTTACTGAATAAATGCATCGC---CTGCTCCAAAGTGACTGCTTGT---------CCAGGCT--CTGTGGACTTGGTTGGAATTCTTGCTCCCATGGCTCTGTGCAGGAGTGCCTGACAGGCTTCCTCGTGGGCCACGAGGGGAAGCCTACCCGGAGCCCCACACTTTATGCTGCTTGACTCAGGCTAAACCATGGATTTCCTTACTTCTCATTACTGAGCCCAGAAA------GGGCTAATAATCA----GCGAGGCTAGCAAAGCTCTGAAATCCCATCGCAAGTTGGAAAGGGAAATGAGTGTTAAAATCATCTTTGA----------AGCGATACCCATGGCTTCACA-GGATGAACATGGTCATTCAGAATGGA---CAGGTCTACAGGAAATCTAAGCACTTCAT--CCAGCCCAGACTGTGGAACCAGGACAAACCCAGCCAGGCACA--TACCTTCTACCCATCGCAGAAGGCC-TAAGGACTGTCCTGACAGCCTCACAGTGGGTCTGCTCCCCAGCTGAAGTGATTTCAACTTGATTATGGCTTAGTGAGCCTGCTCCTCCACTCTTGATTACCCCCCCTCCCCATCT-------CTGTATGTTCCTCATTTCCAGATGTAGTTTACTGGTCTAAATCATTTAATAAAAGGACGATAGCTGCCATAATTCTGATGAATACTGGTGATAGTACAAGAAAGCAGAGGTTTGTCTACATAGC-TATCTT-----TGACAGTGTTTACAGAGGCATTTTGCAGCCAATACTAAACCACAC---GTCATACCTTTTTTTCTTTCAGTGTTGTGTCCATCTTTCTATCCCTGGACACCGACAGAGCTATTGTCAGTGCCAG--CTTGTGTCCAAGGCAGAGACTCTCATATGCACGGCACACA--GTCTCTGCCTCAGAGAAGACTGTCTACATAGGCAGACAGAACCGGAAAAAAAAAAAAAAAAACAATAATTCCACATAAGTGAGATCAAAGAGGCTCGGGTAAGTTATCACACAGGAAGTAATTAACTTTGCTTGGGCAGCATGGGGGAAACCAAAATCCAAACAGAGATCCCTACAAAACATTTAAGAAGTCTGCCAGGCTCC-TGATAACGAGCCAGGTCCAGAATGCATGAGCTCATCTGAACTGGATAGATAAA--CTGGGTGCAAAAGTGGACCAGTTCTCAGCCCTGGCTGCTTATAATAGTGGTGA--------GGAGAACTCC---------CCCTTCAGGGA---------------AACCAGAGTCCCTGAAGTGAGGCTCAGTGTAGCACACTGGAAACA-TCTTTCCAAATGAGTGTG
s HiC_scaffold_1 140083639 2938 + 233722169 GCCACTTCTGCTTCTTCTCCTCTAACCATGCTAGACCATTGCCAGGTTAGGGTACAGTGTGGCTGATGCTCAGGAT-GTAA------AATCAGATGTGTAGACACACATCCCTTAAAACATATATCC---CTTTTATTTGAAGCAATTGCAAG------CAACTCAGGGTCTTGTCGGTCAG----------CTCAGATTCTCCTCCTCCCTTGTTCTCAGAGCTGCATATTTGTGCT---------------AGGACCTAGTCCTAGGTCACTATCATGATTGTGCTGGCAAACGCCCACACAGCCTTGTTCTCACTAGGTCTCTGGTCTCGATCCATATAACTCACAGCAAGGAG------ACTCTGCAT----------CCTGTGCTTCCTCAGCTGCTTGTGAGCT--------TGTCTTGGGCTTCTAAGATCCCCTCGGGTGTAGAGATACCTACAAGACTCTCTTAGGTTTCTCTGCCAATTTGCTCCCTTTAACCTTCACTGAAAATTTTCAAGTTGTTACCCAAATGCTTGCTACAAAGAGTGATGGAAACATTTCCTTTCAGAATTCTGCTGTGAAGCTGCTTGGGTAG-TACAGTGTAGGGAGCATTCCTCTCTGAGTCCTGTAGGAT--------CTCCAGTAT------------------------------------------------------CTACACATGGGAAGAAGAATC----------CTCCATCTG------TGCAGGGATTTCATTATGGCAGCTAGCA---CTGACCTTTTACTCACTAGAAGA-------CAGCATTCCCAGGGTCATA-----------------------------------TTAATAATATTGAGCATTGCATTTCAA----ACCCCCCAGTTCGTTTGCCATCTGGGAGAGTTAGCTGTTTAGTACAGGCTTTGGCCAGCCCTCCTGGGCTCAAGTCTC-----TACCCCTTACTAGTTGTGTGACCATGGCCTCTCTGTGTCTGGGTTTCTTCATTTGTACATAGGTATTACAATAATAA-------ATAGCTATGTCAGGCTATTGTGAAGATGAAACGAATT---TTATCCACAGCACTTAGAACAGTGCCTTCAAAATAGCACATGCTATTTTGcacttatttttatcttctggCAATCATTAGATGAATCATGCTCTAA-AACAGCTTTAAGGAAATggcaaaaagaacaaataagCCTGCACAGGAGGTAAGGTGGGCAGTGACACACACAAGGATCAGCTTATAAA-CACTGTGTGCAGTAAA---GAGGCCATGTGTATAGAAG--------GACTCACTGGATCCTTGACGGGATCTAGGGTGTTCTGCAAAGAGAGAAGCAAAGAGACAGATG-GGGCTGGAGACAAACGTATTTCACAATTTAGAAAGTGTCATGAAAAGATGAATATTCTCATTTAATACTTTCTTCTCTGAGAGAGAAACCA--------GACAAA---TGGCCATCTATC-TGCTGTGTATGGCAGAAGCAAGGt-aaagtg---------------gtgtgtgtgtgtgtgtacacattcatatacatatgtgtgtc----------------------------------aTCTTGCTTTGCTTAGGCTCCTGTAAC------------------------------------AGCTCTT---GTAAAACAGGCTCACAGACCAAATGGT-TTCTGAGTGACAG---AAAATTATCTCTGACTACTCTGG------TTGTGCAAGACCAGAGGT---CTTGATGTCC-----TCATGACCTC-ATCTC-----ATTGTCTTCAAGGCTCTGCCTCCTCACCC------------------TGGGAGTCAGGAT---------------------------------------------------------------------TTCTGTGTATGGATTTTCTGTG------TACAGACAC-------AAAACACTC------------------------------ACCCATCTGTGTGTGTCT----------------------------------------------------------------GGGCTGTGTGTG-----------------GGAGAATCTTCTTCCATTGCTATGTGGTCATAGCTTCCcaccagaaagagaaagaaacctaCCACCGC------CATAACCAGGGAAACAAGCAAGACTTATTCCCTGAATAAATAAACTGAAGACGATTCCAA--TGATTGTTCAGAGAGAAGCACCTGGCTGGCTGAGGTCCTG-TGGAGCTTCTCCCTTCTCCAGAGCTCTGGATAAGTGAGTGACAGGTCTCC--------CACTAG-------CTGCTTAGCCTGCTTTTGCTTATGCTGTTAGATGCAGACTAAACTACAGAT---ATGACCTTTGATTAGTGTCCTCAGAAATCCTTCACACTAGTAATCTTTGTGCAAACACAGCAGCACtt---------------agtgaaaaaggaaaaaga------aaaccacctcTTACAAAGAACTCAAGAATAATTATGGGCTCACAAGGATAAACATGTTCATTTAAAGCTGAATTCGGAAGTAAAAGAAACTAATGCATCTCGTGTTTCTCTCTACTGGTAGAACCCAGACTCGGCCAGCT-GGCACGGGTACCATC---CCATGGACGGGGACAGCACGGCACGCTCTGGT-GTGCGGCAGATGGGCAAAGCTCTAGCTGATGTTATTTTAACTGTATAACAGCTTAATAG-----------CACT---AGTTACCCCTCA--CCCATTTGATGTGGCTGTATGT---------CCAGAAATGATTAAGTGGCT--------------AAAGTTTGATAGTTACCATATTTCTGTTAAATACCATTAAT----CATGAAAGTACAAACTTACctttattgaatattttggaATTAAAAGTATTTGGCCAAGaagattccccccccccccagaggaAACTAAattattccttttatctttttagaTTTCTGCTCACTCTTGCTTCCTGGGACTCTTACTGAGGAACCCCTAGGTGAAGGAATTGCATTCCAAGCTGAGCCTCTCTCAAGCAAACCAGACATGGTCTCTACCT---GGAAAGCTGACTAAATGGGGAGACAGGC---------AATGGAAAATCATAATAATTCcacataaggaaaataaaagaggcaTGAATGAGTTATACAAGGGGAAGTAATTAATTCTGCTTGGGCAGCAGAGGGGAAACCAAAGCTGCCTCTCAGGTCCTTAAGGAATGTTCCTGGCATCTTCCCGACTTTGTGTTGATAAACCAGACCCGCATTTCAAATGTTTATCTGCACTGAAAAGATAAACCCTGTATTTTCCAATGCAATGGTTCTCAGCCTTGGCTG--------AGTGTTGGCATCCCCTGGGGAGCTCTTGAAATGAGCGCATGGGGGAACGCACAGGTCAATTAATCAGACTCCCTGGAGCGAGTCTCAGTCATGGGTACTTGAAAAAGTGTCCCCAGATAATTCTG

a score=17766
s chr3           153242091 748 + 160039680 TGTGTATCTATTTCCAAGTGCTCACCAGGCTGAGAATCTGTTCTCCGGTGTGGGCACTTGCATCTCCAGGTAGGCACTA-TAACCCTGCTTCTGCTGAG------------------------------------------------AACATGGCACTGAGGTCTGAAAAGCTGCCCAGTCT------------GCCTCTGTTTCTCCTCTGTGCGGGGCCTGACA-GCGCCCGTCAACAGGGACATCACACTCGTTA-GGTTTGTTAGACAAAGGGCAGGGAGACTGATAAATGATTCCTTGATTATTTTCTCTCTGAAATAACTCTTCTGTCCCCGTCCTCAAGTTACATTTAGATAATGAATGGAGGGCTTAAGTGTTTTCCTGGGGAATTATTTAGGAGAAATCGCATTGACGGTTTTAATTCTCAGCAACTGCGAGCGGATATGCATTTAAGAAACAGGAAGATGGGAACAAAGATTCTGTGTT-----TCTGCTCGCAGAGCTATCTTAGTAAAAAACAGATGGCTGCTACCATGTTCTTTGTTTCTTTGTAAGAGGCTTCAGTCCCTGACAACCCAAGTTAGCAGGTATAGGTCTTATAGGTCATACTCCTGTAGCCCCTGAGGGAAGTGTCAGAG--GCAGGATGTCTCCAGGCACCTACCC--------TGGTGTGAAGAGGTCAGCTCATGAGAGCTAATTTGTCCAGTGAGAATGGCAGGCTGCAGGCATGCCCGGGCA--------------GAACCTGTTTG----CAAGGTCTTCAGAGGCTGGACAACAAGGATCAGGAACCTGGGACACAGACCG-TGGGGACGGACAG
s HiC_scaffold_1 140088925 819 + 233722169 TATAtgcttactttcaaatgtttgctgtaacaaaattttgttttctgccatgg-catgcagaactccaggtAGATGCTAATAACCTTGTTGCTATTAAGGACAGCAAATTAGGAATTAACAATGCAACCACACAAAATTCTAGCGATAACATCACAATTAGGTCTACAAAACAACAcagctctttttttaaagaatctttgcTTCCATACTGTACTTTGCCTGATAAGCACTTGCCAACAAAGACATCATACTAATTACAATTTGTTATACAAAGGGCAGGAAAACTGATAaatgattcattgattatttccTTTCTGAAATAATTCTACT---CTTGTCCTCAAGTTACATTTGGATAATTAATGGAGGCCTTAAGTGCTTTCCCAAGGAATTATTCAGAAGAAATCGGGTTGACAGTGTTAATTCTTAGCAGTTCTAAGCAGATACCCATTTGA-AAAGAAGAGGAT-GGAGTAAATATTGTGTgctctttgtgtgtgtgaaagaATGTTCCTTTTAAAAGTAGATCAGTGTTATAAAACCCT-------CTTTTAATGTTCTCCATTCTGCACCATTCTAAGTGA-CAGA---AGGCCCAACTTCCTCTTCTCTCTATGCCCACAGAAGCTGTGCCAGAGAAGCAAGAGGTCTCTCAGCATTTATCCAGTTTTCTTGTCCTGAAGAAGTCAACACAC---AACTAATTCCTTCAAGGAGA----CAGGCTG--GGCAGGAGCGGGAATTAGGGCGGTGAGGGAAAGTGAGTGGGTTCACCATCGTCCGAGATTGGAAATTAGTGATTAGGAGTCTGGCATGAAGACAGATGAGGGGTGACAG

a score=24585
s chr3           153245358 1740 + 160039680 tgtgtgtgtTCCAGATGAAACAGA-ACTGTGCACATATATTCCATGACTCATTCAAGTTCC---AGTCAAGGATGAAACTCTGGGCTGGGCACGACACTTCCACATGCAGGCTTCTTGGATCACAGAGAATCAATCTCTAGCTAGTTTGAAACTTTAAATAAACA-------CATTATTATTCGCTGTTTTGTGCCTACTAAAATCATTAACTTTAAACATGAACTT-GAACATACAAGTGTGTCTACAGAGGGCTTTTCTTTTTTGGATCTCTCCACTCCGATTGGAAATAAGT----ATTAACTCTATAGCTGAAATATCCCTTATGAAGCTCTGTGCGGAAGCCTGGAGTCGGGCAATAGAGAACCTAAGCCTTGTCTTTTCTGTATCCTGCAATTGTGGTGTAATTCCCAGCGCGAGTCTGAAATAATTAAAAATGTAATCTGATATTTGCAATTTAATGAAACCTATCTGACAACTGGGTATTGAAGAATTTACTGTTCCATTATCATATAGCCTTCTTAAAATCTAATCCATG--TCTCCTACAGAAGAGGCACATTCTTTC-TCTTAGCAGACACTGAAAATTAATGGCAGATGAACTTTATTTCCGCTGAGCAGCTGTTGAGAACTTCAGTAAGGCACGAATCTTCAGTACACAGGACTTGCTTACTGTttgttttatggcgctggggttggaattccggctcttgcacaagcaggatgagcattctgctattaaggtacatccccagccGTGTTGCACAGGGTTCTACAAACCCCAGTTGATATGGAACAGAAAGGCA------AATAGATGGACAAATGGGTACAAAGTGGCTACATAA----AGT------------CTCTCTCTCGAGC--CTTGCTGATCTTGCCCAAAACTGCCAT-TGGAATCAGCCAAAGATGGTTAAAAATGCATCTCAAAGTGTGAGCAAAACGGAAGGATG-TACCAAAGACAAAGT-------------AGGCCATGCAAACAGCGTCTCCAGCCTGCTTCCTACTTCTCAGAGACAAAACAGGAGCTATGGTTTTCTGCTTCCCCAAGTCTAGTATGGAGGAAGAGCAGTGTACCCAAAGATTTCTGGCTGTCGAGAATGAATTCACTTCTACtt--caagacaaggttttataaaaaccacaatggccatgaacccattacaaagcccccgatgaccttgaacttctgttcctccctccttctcctcccaaaggaggagattacaggcatggaatgtcacgcctgcttttatgtgaagcccggggttgaacccaagaccttctgcagctaagtaattcctctactgactgagctacatctcagcccATGACTTAGTTCTTAACTCGTTGGGTACGTGACCACACAGTTTAATTCTGGGGAAATCTTACTCTTTTAAAGTTAATTTAAGGTACTCTTCAGACTAAGTTAGCATTTTTCCTGCCCCAAGCACATGTGTTCTTTTAATGGGACTTACACACAGTCCAGCAATTTGAAGGAGTA------AGTCCCCCTCCTTGCCTGACATGTTGCGTCATATTAATACTGAATTTTAGATGTGAACTATTTTAGTGGCCCATTTTCTAAGC------CATTCATCATCAGGAGT-CTGCCCAAAGTTAGTACATTTTATTCTGTATTTAATAAAACTCT---CAGGTTTTCTCTCTTGGAAAGCAGTAATGCAAA-CAGGTCGGGGCACATTAGTTCTGTGGGCTAGGCAAGTGTCTCTGTACT----------GAAGGCCTTCTGGGCATTA-GAATGGTCTGTCTGTCAGGAAGCA
s HiC_scaffold_1 140091564 1438 + 233722169 TAtgcattttccaaagaaaataaacaccaaGTTC---TGTTCGCTAACTTGGTCAGGGTCCCACGGTCAAGGATGAAAGCCTGAGACAGTTACTGGAGTTTTGCATATTGGCTTCCTGCATTACAGAAAACTAATCTACAgtccttttaaaacttgaagtaAATGAGCTCAGCTTTATTATTCACTGCTAAATGCctaagaaaattattaattttaaacatgagttaagaaaataggaatagatccACAGAGGCTTTGTCTTTTTTG-ATCTCTCAGCTCTGATTAGAAATAAGTCAGAATTACCCATGTTGCTGAAATCTCCTCTACATAG-GCCATGGGAGTGCCTGGActttaacaatagaaaatataaGCTTAGCTTCTTCAGGAATATATGACTGTCAAATAATTCCCAGTGTGAGTttggaataatttaaaaagtaatttggtATCTG-AGTTTAATGAAACATATCTGACAACTGAGTATTGAAGACTTTACTC----------------CCTTCTCAAAATCATAGCCCTAGTTCTCCTGCAGAAGAGACACATTCTTTCCTCTTGACGGACACTGAAAGGCAACGCCACACAAAACGTGGTCACGTTGAG----------------------------------------------------------------TATGATCCTGAG--------------------------------------------------------------TGTGTGG---AAAGTTCTGCAGACACCAGTTAATGGGGAGCAGAAACACAGTTCTAATTTGAAGGCAGAAGGGCCACAGGGGTGCAGCATAGCAGGGGTGAGGGCGGGGCACATTTTCCAGGGCTGCTTGCTGA-CTTGCCCTCAGCTGCTGGGTGGACTGAGTCAGGGTTGACTAAA--TACATCCCGGTTTGTAGGATGAAAATAAAGATGATACTGAATTCAAAATGAATGAGAAGAACAAACCAAACCAAGAGGTCCTCCAAC------------TCTTGGGGAGAAAAGAAGACCTGTTTTTCCCCACTTCCC-GAGTTTCTTATGGGAAAAGAGACATAGGCATGGAGGGGTGATGGTGGCTGGGAGGAATTTGTTTCTAATTTGCAAAATA-----------------------------------TATGAATGCCCAGTTGACCT---ACGTCTGATC------------------------GGATCTTGC-------------------TGTCTTTA------------GATCTAATGTAAG-------------------------TACTG--TTAACCACAGGTCAG----TGTTTCTATTCTTTCCacgttg-----------------ttt-------------ttttattttttta-------------------------------------------------------------tcttttaatattacCCAC---CAGTCTGACAGCTAAGAAAAGGACTCTGAGAGCTGCTTTCCCACCTGACATGCCGCATCATATTAATGCCGCCTTTCATACACAAATTATTTTAATGGCCCATTTTATAAGCTACTTGTATTCATTGTCTGGATTCCTtacaaaaattatcaaattttattc-----ttaataaaACTCTCCCCAGGCTTTTTCGCTCATAAGGAGATAATGGAAAGTAGACCAGTGCACATTTATCCTGCAGGCCAGGCAAATTTCTCTATGTCGTGGCAATGGGCAGGCCTTTTGGAGGTTATAAATGAGCTGCTTGTGTGGGTGCA

a score=96929
s chr3           153247820 5356 + 160039680 [encoded data, 6004 characters]
s HiC_scaffold_1 140094206 5476 + 233722169 [encoded data, 6004 characters]

a score=33503
s chr3           153253198 2302 + 160039680 AAGAAACTTTATGTTTGTGTAGCCTGAGGAAAAGTTTTCTTATATTTAATTCTGCCCAACGGAGGATGAGTTTACA--CTGTCCCAATACGCTCTGTAGCTCTAG-GATGATAAATGTGG-TGGCCATTTCTTTGTCTGAGTTAATACATGAGGAC-------------------CAGAAATTCTTAGACATTCCTTCCACAGAGTCGTCTGTGTCTTTCTTCTGGAGTCTAGATGATGTTGTCATTGTTTAAATAACAAAtgtgatggttactcagttgtttacttgtcacagtctagagtggcctgggaagagtctcaa----ggaaggattgtgtagatcaaggtgtcctag-gggcatgtaaggggagttgtcttgattccttgttccctggggtgggaagccctgtctgctgtgggcggcgccagttccttggaaagaggatgcgcttccccctatattga---cagaccgtaaacctggggttgtgagctaaacgtgaccctttctacctttaactgctttgtcggagcatattatcacagcaatggggaaggaaacaaacataCCTAGGAATGCCTTCATTGCTCTTTATGACTTCGTCAGCCAGGACCT-CACACTCTCGGGAACATTTCCCGTGTGTGACTGCTTTTGTGGCGAG-------------------AGGCTCCCAGAAACCGGAGCTCCGTGGAGAGATCGCACGTTACAAGCACAAAGGAAATGAAGGTGTAAATGCAAGT---ATAAGTGTCTGTTTGGCCACTT--AAAAGAATAAAGATAATCGCTACTAAAATTTAGCGTAGTATTTCACGATGACATAATCACGTCTC-TTATCATCACAGCAGAGTCAGTACGCCAAACACTCCCTATGAGCACACTGCGACCGACACACC------------CTCAAGCagtgggtttacata-----cttactatttggtctgggcttattcg--ctagccctgc----cagaacgaacaaaagg-cttaaagaggttttagcaaataacccacaggttg-----accaaggaatagtgtccaggccagtacatagacatacataatgaacaactggaggaa-----cacgtcc------cagatctc--ctagctctcgatgccaggatgaaaactgtaatgatttgccctgataaggtctaaaccatttgaaaattattcaggaga---ctaaaatacaaatcacatgcaccttcacactaactgat---cctaacccaaaacgtccacgtgcctaagacaattaattagtgatgacagggtatgtacgcctat-----atgcaggaaggaagacatttgccaaaatATGGCTTTGGCAGGAGTCAACTATTTTAGATCCATGAAATGTCAATTTTATGGAATATTCATATGTTCACCCTCATTTACTGGAAGAAAAATGTTCAAATTTT--------TGGGTGTATGAGCAA-AAATAATTGTACATAGACTGATGGTCTGAGGAAGAGGAGCGTTAAGAAGCATGGGTTTGGGA--CAGTGTTTAGGGAACTGT-------TGTTTC---ATTCTGTACG---CCTGCTATGTGTATGAAAAACTGATACATTATATGTTATAGAAGCATTGCCCTTTGTGTG---------------------------------TTACA-TAAGGGGAATGCT-GGTATCTTGAT-GACTGAGAGGAACTGACTGGACCGGCAGCTACGACTCCTTCCTTGACTTCATTCTGCAGTGATCCATCTAGGGAATCAACGTTCCCTTTGAATAAACAAAAGCTTTAAAAGAAACTATCTTTTCAG-----GGTGGTTATAGAGAATCTCAGTGTCAGTGAGTGGAAGATGGGGGTTGCATGCTCCCCTTTGAGGCCACGAGGTAATTAAAAAGCAATATTCAGTGGCCTTCAGAACATCTCTCTCCATGAAGTCTCTGCATGAAACAACTCAGGAAATCCAAAATAGACAAATCACACAAACGAATCAGAAAGAAAAGAAAAAGATTGATAAAGCAACTTTAATTCTAGTCAGCTTCT-----------GATCCACTAAATTATTTCAGTCTTTTAAGTGGAAATTCCC-TAATACTCCAAAGCATGAGTTTTTATTT---GTTTCTTGCAAAAGAG--TCTGAAGGGCTCACAGGGAAGGGTCTTCCATTCAAGGGAT--GGTTTCCGTGAAGCCTTCT---TCAATGGCTCTGGGAAATGTGAGCTCAACCTGTTTC-------TGAGATAGCCTGTCTTGCTTATCAGCTGAATTAATTCTCATTTATACAGCACAGAATCAAAACCCAGA-TTGTGTCTCCAATGAA---------ATGGGTAACTGCTTATTCGTCGGTTCCTTCAGCTATTGATTCCTCCAGCAGTTAGTCAAGTGACAGCTGAGTTTCAGGCCAGGGTGAAGACACAAA--ACCTCAGCAGCCTGCCACTCATGACTA-AGGACCGCCCACAG
s HiC_scaffold_1 140100220 2332 + 233722169 AATAAATTATATTGTTGTTGAGTTTGA---AAacattatctatttttaatatattccagCAAAGGAATAATTTGCATTCTGTGACAATAAGCTCTGTATCTCTAGAGGTAGCAAATTTGGATGGTCACTTGTTAAGCATGCTAAATATATATAGGTAGTGTGGTCATTTTATAGTCAcaaattctttgaaatttcttctatagAGACATCTAAGCCTTTCCT---GACTCTGAGTGAGCTTGTAGTTGCT---ATAA----------------TTAATTGATTCTATGTGAGCTTCTAGTGACACTATGTGAGATCCACAGCTAGGTCAGAAATGCCTAGACCA----GTGCTGGCAAACCTTTAAAGATGAGTATCCAAATT------------------GCAACCC--------------AAAGCCCATTTATTGAAAAATG------------CCAACATTGAAATTAAACCTCAATAttcaggttttagtttagaaaaaaccaCCTAC-Ccattaacatcttt---------tattttcaaagaaa----------agcaaat---------------ctcAT-GTGTGTTATGGGTTCATCACCCCTGGCCTACACAATATTTGCCTGATTTTCT-----TGAATACTTGTTTGGGGGGTTCTAGGAACCCGGCCACCATGCTGTGAGAAATTGAAACCACACACAGAGACCACACATGGAAAATATAACCAAAATTAAACATAAACTTCCATTTACATCCATTTTCATTTGGAAATTTGTAAATGACT-----TAAATTTTGCTaaactttaatattctgtt----aaaaaaaaaggcaCCCTTAGTCATCCACATGTCAGAGTTAACGTGCTAAACATTCCCTCTGAAGATACTGCA---GATACTCTGACTTAGGGTGTCTGATAAAGCTGGTTTATCTATATATCATATTATTTAGCTTTGATTTATTTGAATTAGTCCTTCATATCCAAATGGGCAAGGGGGCTTA----GACTTCTGGAAAGAAGCCATACCCTGTGAAAAACCAGCAACAGTA------CAAGCACAGGGACATG----ACAAGAAACTGCAGAGCTGATCCACATCCAGGGTCCAGATTTCAGCCAG-TGGCAGTGCCAGAGGAAAAACTGTGGCTGTCTGGTCTTCAGAGAACCAAACAATTGAGCTATCATCCAAGAGATGACTGAAATGCAGAT-----------TTAGATCATTTGATTGACCTCACCCGAAGAATAATTGTGCCTTGATATATCAATTAGTAatgatattttatacatatttgttaCTAATGAATGAGAATAGAAGActgcagaaatataaaaatgccaGTGCTCCACTAGTTTTGACCCTCCAAATGTCAATTTTGCATGAT----------CCAACTTAATTCACTG-AGGTTAAATGCTCAAAAATTACTTACCTTGGGGGTGCGACCAGTGAAAAATTGTACATAGATTACTGATTTAAGGAATAATATATTTGATAAACATGGATTTAGGAGGAAGTGCCCAGGAAACTATGTAGCTTTGTTTCTTGACTGTGGATGTATCCTGTCATAT---TGGAACACTGATATGTGGCTTGTTAGGAGATTACTGCTTTCTTTGgggaataaataattttattataacgcATGGAGCCTTTACAATTAGGGTCGTTCTCAGTACCCTAATAGACTAGGAGACACTGACTGGAATGCCAATGAGTATGCTTTGCTTGACTCCATTCTGCAGTGATCTATCTAGAAAATCAACATTCCCCAGGTAAAAAACAAGGCTTTAAAAAGAATGATCTGCAAGGGAGCTGGTGGTTATAGAGAATTTTACTGCCAATAAAAAGAAGATGAGGATTTCTTGTT--CCTGCGAGGCCGTGAGgtaattaaaaaacaatatttagTGGCTTTTAGAACACCTATTTCCATGAAATCTTGGCACTAAACAATTCAGggaaatcagaagagataaatcaCCTAAAcagatcag-----gaaaaaagaaatggataaagCAACTATAAATCTATGCCACCTCTACCTTCTTCAGGTTCATTTAAGTTATTTCACCTTCTTAAGCACAAAATCCCGTAACACTCTGTAGCACGTGTTTGACTTTGGAGTTCGTTAGAATTGAGTATCTGGAAG----ACAGGAAATGTCTTTCCGTACAAGGCACAGGGTCGTGTTGATGCCTTTTCTCCCAAGTGGTGTTGGAAATGCATCCTCCACCTGCTCCTGCAAATTGAGGTCCCCTG--------ATTGGCTCAGTGGGTTCACAGTTTCACAGCACAATATCCAAAACTAGATTTATGCCACAAACTAAAAGGAAATGATGggt--ttgtttattcatctgtTCTTTCGATCACTAATTCACTCAGCGATGATTCAAGTGGCTACCATGTGCTAGCCAGtgataaagacacaaaagagtaCAGCAATTTGCAACCTGGGGCTATCAGACCATTCACAG

a score=52977
s chr3           153259752 2870 + 160039680 AAATCGGGTAGTAAACAAGAGCAACTAATTCCTGTTAATTGAACAGTTGCCACACCCCA--CAGTTTCTAAGGATACTTGGAACGAGTCCTCTCTACTTGTCATTTTTGA-AATGTGGAAAATAATTAGTTGGC--TGTACTTACCCACAGCT--------AAACATATTGAAACTTATGAGCAAGAAGCTTGGAGGCAACAGTTAGTGTTCTCTTTCTCTAGTGGAACAGAATAAGGCATGAACACTAG---AACGCTGCCCTCCTGAGCTGCAGGCTCTGTTAATACA-------TGG------GGGAGGGGAAGCAGGGGATCTCACATTGCATTTTGCATTCCCACTCCTGAAAGCACCCTGCATAATACCCCTTGCAGCTTTGGGAGCACTGATGCTAAGTATCTCTCCACTTTCTATGTCTTTGTGTGTGTGTGTGTGTTTCCA-GATATTCATGCAACAGCTGGGGGCAGGGAGGAGGCATGCCAAGTTTTCAAGGGCTATGGGGAAAATGGATGTTTTTATGATATGATTTATAAATGATATTATATCTATGAAACTTTAATGTTTTAATTTTGGCGCACATGGCATGAATTAGTGAGCCAAGATAACTATTAGATACTCATTTTCACAGGAGCAGTTCCCAGGAAAAGATAAAGGGGTCA---CTCCTGGCGAAGATTACCTTTCCGGCAGA--GACACAAGCAACCAGAGCC-AGCCTGGCCCTCCTGGTAAAGCAGCACAGCTGCAGGAATCCTAATAATTTCCATTTCACAACGGTAAAATCAAAGTCAGAGCAATGGGAAGATGAATCACAGT--ACTTGGAC-----TTAATGCGGG-AAATTGGGGAAAACAAAGTAGA-CAAAGAAGAGTGAAGGCACTT-AGAGTTATTTACATAGAACAATTCTCCTTTTATGTTAACCCATCTGATG---AGCTGTGCAGCAAATCCACAGAGGAAAAGAACTTTGC-ACAAAGCCACAATTTGGTCTTTGAATTACAAAAATGTGTT---------------------------------GTTTGTCTTCTTTTGTTTCATTGTTTCACTTTCTCTTCCTCTTAAGTTTAGGAG------GCGGGAGGGT------GGAGAGTTACTGCTGCTTCCGCACTCACACTGTATCTAGACTAGCCTAGACTAAGACTTGAGCCTGCA-----CTGGCTGGGGTCTCCCAGGTTAGGGAGGAGGGGGAAAGAATG----------ATCAAAGA----------------GCCAAGGGATTCCATGTGTCTGAGCTCCTAGACTCTCACAGTTCAGAATGAAGGGAAACCAAAGGACATCAGGAATAAACTCCATGAAGAGAC-GGAGGCCTT------GAATGGGCCCTGG----AGAATGTAGAAA-----------------------TCGGACAGCAT--------CAGATTT---------CAGATGGAAGAGGTAATCTCC--ACAAGGGATCCTACTGGATAAATGATGGT--ACTTGGAAAACAGATAACAGGCATAATTAGTGGTTTCAAAGAGGGCATGTTACGTATGCAAATGGACTTCTTGGGCCATGAGAAGC--CACACTGCTCA-GTCTGCTGTCAACCT--------AGGCTACCTGGAATTGTCCCCTTCTGGTTTTCCTCTGGGCCAGTCTCCTGGCTGATTCAAACTGATCGAACAGCATTCAAGAAAC------TGCTCCAGATGACTGG--AAAGTGTAACTGATGTTTTCTTCATAAACCAGAGTTGCA----ATTCTGTATCTCGGGGGACTAATATTTTGACGCTTC--AGGGTGTTATT--CTGTCTGTGTCTGGCTGCTACACAGAAGGCTGCCAGAACCATCCTCCCAACCTcccacccccacccccaccccGGTCTAATAGCCTCA-AGGCAACAGCTAGCATCAATTATGG-CTGAAGAATAAGCAATCAACCCACAAGAAGCAATTCAAATGAAAGATAAAATTGTTTC-TGGATATTCTATACTATCCAAACTTTGCTCTACAAAGAGACTGGAGACCACTGCATTCTTCAGGGTGACTCTGGGCACCATTAAATCCCTTCCCT-GGCCTT--------CCACTGTCTAAGTAAAACCCCACCATGGTCTGAAAGACCCACTGTCAAACAGCTAC--AGCCCTCCCTCCCCCATCCTCACCTCATCTGACCATCTCCTGGGGAGGAGCAGAG-AATTCTTTTAGCAGAGTGGACTAAGGTCTCCCACGCTGGCT-TGCTTGCCCTGGCCACCTGTTCCCTGGTTAGAGAAACCGTCCTC---CCCACCAGCCTTCTGTTGCTTGTCTCAGACTAATGATGATGTATGGGGCGATATGTTCTTCCTAATTATGAAAAGTGCTGTCCATTGGTTGCAAGATTTTTATTTGATATTTTCTCAGAATCTTGGCTAGCCTCTGTGCCTTGGGGCCCTTCAGTAAAATTAGATCTCAGAGCCCCCATATGGGATGTGACACACAGCTTTTAACCAGGAGCTCTTACTTAA--AAAGGAGAAGTGAGTCTCCACAGATAGAATTTTCCACTCTGCAACCCACATCCCAACCAAGCCTGAGCTTCCAGACCTGAGGAGTCAATCCCGGAGGCTACCACTGTTACCAATCCACTTCAACTGAGCCCGAGCTTCCAGACCTGAGAAGTCAATCCCCGAGGTACCTCAGCTCCCCCTGACACCATACCATTGACCTCTGTTACTTCCCTGTGGATTCTTTTTGTCTTCTGCTCCTTCATACCGCGACACCCCAACCAGTGTCTGTGGG---TTAATTCCAACCCCCAGCATCATGTGACAA----------------TGATGTCTCCTCTGCT---CCCTTATTTTCATCAGATCTCTCT-GACAGCTTGTGTCTCAATCCAC---ACCCATGTATGTGTCTATGCTACAACTTTAGGCTCTCGTGAGGTCTCACTTGGAATACAG--AGTAGGTTTCAGCTCCTTCCTAGGTGCA-----GCTGCCCTCCTGGTTTCCCCGAACTCTTCCCCATTTATTTCTATACTCTCCCTTCTGGATACCTGCCCTAAAGTGC
s HiC_scaffold_1 140105985 2904 + 233722169 aaaaagggGAGTAAACTAGGGCAGGTTACTTCTGTCCATTAAGCTGTGGTCAATGCCCAATCGCTATTTTAGGATATTAAAAAAGCATCATCGCT----GTCAATTTTCACAATGCAGCAAG-----AGTTGACCATCTACTTCATTATTCCTTTGTCTCAAAGCATATTGAGAAATTTGGAGAAAAACCTGGAAG--AATGGTAGATTGTCTCTTTCTCCAACTGAACAAGATAGGacataaaaaataggaaaacggTGCTCTCAC-AGCTGCCTGCTCCGTGAATACAGTTCTGCTGGCGTCTCTGGTTGTGATGCTGTGT--------TTGCAGCTTGGGTTACGACTCAGGGCAGCAACATGTACA------CACACAGGGACAGGAGGACTG--------TGCCTCATTGCTGTGTACATGCTGGTGCTAATGACTTCTCTGCCACGAACTTTGAGCAAAGGCTGG----AGGAAGAAGACCTGCCA-GTTTTCAAGGCCTATCgg-aaaatgaatgtttttatgACATGATTTATAAATGATATTATATCTATGAAAttttaatgctttaattttggCCCACATGGCATGAATTAGTGAGCCAAGATA--TGATGGGGCCTCGTTTTCACAGGAGCAATTTCCACTAAAAGATTAAGGGGCCATAGCTCTTGCTAAAGGTTATCTTCACAGCGGGAGGAGGCAGGTGACAGAAACCTAGCGTGGCCATTTCTGCCACAGAGTTCCTCTGGAGGAATCAAAAAGCTTTCCATTCTGTGCTCTTGtcattaaaatcaaattaatggGAAGAT-AATCACGTTTTACTTGGATAGGATTTAATGAGAACAAATCATTCAtagcaaaacaaatcaacaaagagTACCAACAtttgaaaagtatttaaataCTGCAA--CTCCTTTTTTGCTGTTCCTTATCATACTTATTTATGAAGGAGGTTTACAAAGGAAAGGAACTCTGCTGTGATCTTAGATCTTAATCTTTGAGGCATTTGAGTCtgtttctatttatatttcattttgtcttactgatactgtttttctctgtttttttcttcgcttc--tttctgtttctgtcatGTTTGggggatttttgagacagggtctcattgtgtagtacaggctggctttgaatctgctctgta---------gcccaggctga-ccttggacttgcagtcctcctgcctcatcctctcaagt----gctgggattacaagcatgtccCATGGCAATCAACTATTTCTTCTGGAGGTTTGTTGAGGGG--CAGTGTATGTTGGCTGCTG------CTCAATCAGCACTGTGTGGTCAC---------TCTGGATTAAACACCCAGACTAGACTGGAGATCTCCTGTCAGAGTTGGTTTTGGTCTTACGgtgtagggagagagagagagaaggcttAGCGCTTGAACAGCATGAAGACAACAGATTTTGCAGCCCCCAGAGGACAGAGGGACTCTCCTGGCAGAAGATCCTA-TGGACCAGCAGTGGTGAACAGTGACTGTGGATAATGGATGTGTTTGGTAGTTGCAGAA---GCACATTATACACACAAATCAGCCTCTCTAGCTATGAAAGCCTTCTCATTACTTATGACGACTGTGAAAATGTTTCATCAGGGTCCCTAGAATTCAC---------TTTTTTTCTGA-CAAGTCCCCTGTATATTCTAAAGCTATGAAACAACTTTTATAAAACAGCATCTACTCTACAAGACTGACTGAAGTCCAACCGATGTCTCTTTTCCAAATCTGAATGACATACCAGCCTGTGTCTCAGAGCACCACCATTTCAGCTATTCCTGGGCTGTTTTTACCTGTTTGTGCCTGGCTTCT-------------CTGGCATTAGCCTGTCAAGAT---------------GCCTTGGACTAACTGCAGAACGGGGAAAAGCTATCATCAATTATGGACTGGAG--TAAACTATTAACTTTGTGGAAGCAAATCAGATGAAAGCCTAATTTGTTTTGTGGACATTCGGGGCTATCACGACTTTGGTTTATCAAGAGATACAAAATCACTTCAGTTTCCACAGTGTGTATGGGCACCAAGAATTTCTGTCTTTTGACCTTTGTTGGTGCCTCTGCAAGAATAAAAGCT----------------ACCCACTACCAAGTAACTAATAATTCTTTTCTCTGCCA---------CATGTGGTGATCTCCGGGGGAGCAGCAGAGCAATTCTTTGAGCAGAGTTGCCTAAGGTTTTCCGAGCTGGCCCTGATTGCACTGACCACCTGTTTGCTGTTTAAAGACGGCTTCCTCTCCCCCGTCAACCTTCTGTTCCCTGTCTCAGACTAACGATGATATATGGGGTGCTGTGCTCCTCCTAATTATGAAAATTGCTTTCCATTGGTTCCAAGAGTTTTACTTGATATCTTCTCAGGATCTTGGCTAGCCTCTGTGCCTTGGGGTCCTGAAGTAAAATTACATCTTAGAGCTCCCATATGGGATCTGACACACAGCTTTCAACCAGGAGCTCTTATTTAGGTAAAAGAAAGCTGAAGCTGTAAAGA------------------------------AAAGAGGTCTGGGCT----GTCCGGTGCAGTTCAGTCC----ACCACCAA----ACTAGGCCGTTATAACTGAAGAGAAGTTTCCAGGCCT--------------CAAGGCACCAAACCGTCACTGGTAACCATACCATCAACCACCATCTCTTCCCT-CAGATTTCCTCATTATGCTGCTCATACACAATGGGACCTCT---CCTGTGGCTGTGAGAGCTACACCCCAACCCTC-----CATATGTAAAACCTGAGAGTTACTCTTGATGCTTCTGCCACTAAGCATTAGTGATCATTAGTTCTTCCTCCACACCTTCTAATCTAGTCCACTGAATCTATGTGCAATCTGGTGCT-TTATTTTATGCATATGTGA-TTCTCACTGGGATTATAGAAAATAGAGAATAATTCGCTTTTAGTTGCACACTTGCTGCCTT-----TACTCCTGTTCTCTTC---------TTTGACACACTCTAGTCTAAAAGATTGCTCTGAAATAC

a score=58311
s chr3           153263617 4275 + 160039680 [encoded data, 4530 characters]
s HiC_scaffold_1 140109170 3789 + 233722169 [encoded data, 4530 characters]

a score=83492
s chr3           153276102 3533 + 160039680 ATTTATATTTCATAGAGATAT---TTTTATAGAGGTATTTCATAAAAGTTTTA-AGTCCTTATTGATTTAGGATGGGCAGTGCTAGATCAGCCAACCCAAGCACACGTGGTCCATGAGTGGCTGACTT---GGCTCTCTGCATTCA---------------ACTGATGACTTCTGCAT----------GGCCCAGCCCTTC-----TGCTC----TTTACCACAGGAAATGGTTCAGGTTTCCACCCACGCCCAGACAGAAGACATGCAGTGACTTAGGCTGCCTTGACCTGGATGAGCTAGCAGCATGACACTGGACTCTTGAAGAGAAAAGCAAGCAGCAGGGATGGTTTCCCTCCATTTTAAGAA---------------TACCA--AATGCAAGAACAGGGTTTTCACAGCTTGAAAAA------TCTAAAGC----AGCTTAAGTGGTAAAATATGGCTCTAATCAAAACGACTCAGGGTTGAACAGTGAACCTGGCAGCCTCTGGCTACTCAGTATTGTTTCTTGTGAGAAATGTGATATTCAGGGTATAACCTAACCTGCAACTATAAATAATACGCAGGGCAGAAGGAACCAGGAGA----TCCCTACACACCAGTCCAAGTGGTTCTAATTGTATTGTACCCCAAAGAGGAGAGTAATTATGTGGGGGA----GCATGGGATTTCCCCCTGAAGCAATCAAGCATC--------------CGCTTCAGCCAATGCTGACTCACTAATAAAACTGCATCTGTACTCAACCGT---------TTATTTTGAACGTGCCCGTTTTTTGATTTGCCTATGGGCCTTCCTTTGATTTGTCCGAGCTAATTCATCCGCAGGGCCAACACAGGC--TTCTTGAGTTGACTGGACTCTGACCCTGTTTGTCTAGCAGATCCTCTGTACTTGTCCAAACAGGTGACTTTCCATGTTCGGCCTCGCTCGTT-CTGCCAAGCCCGAATCCATTTTCA----GGAATATTTCCTC-------TTGCATTTCCTGAACTTGTTTT-CAACAATACAGGAAAA------TGTGTGATGGAGAGAGA----ATGTGCAGG--GGGGCAGCAGCGGGG-------GTTTTCTCCTGCCTTGTTTTTCGCTGCCTTCACTTCAAACAAGTGTGTGTTTAGGCGGCAGAGACAGCAGCG----TGCAGCC-TTCATTCATTTCCCT-AGAGAATGGCTTATCAAGTGCTGAAAATACGAGCTGTTCTATTCTGCAAAACACACATCAGATCCTTTGACAAGCAGTAGTCATTACCGTGTGTTCTATAGTTCCCTGCCTGGAAAGTGGTCGGCGGACAAGCCATCCCCTGGGGCGGCTTAACCCCGTTTATTCATCTCAATTTTCCTCTAGGTTTCTAGCCACAAAAAGaaaaa-aaaataaattaaattaaCAAAACCCATTTGGAAAATGAACCTTTTGCGGTGGGTTCCAGGAAGCATTTAATTCAGGCAA-GGCTGTGCCTCGCAGAGCCACCCACACGCCACATG-CCGCTGCTTTGATGCATGGACAGTGGCAGCTGCAAACCTGAGATCTGAGGC------TCATTAATGCATCTGCATGCTGAGGAATGTGCTGTATGTCGAGGTTTCCACGGCGACTGGACTGCGCATGGCCTATTCTCTGGAAGGAGGAACCTCGGTCTGCTGTCACTGG-GGGGTAAGCATTACTAGCGAGCATAGAACAGCTGCAC-ATGTGCCAGAGTGGGTGTCAGTCCACACACTGGTTCAATACAGTGGAGCCCCTGTTGACATTCCAAATTACAATGAGAAAGCCCGGG-TCTGTAGACAGCTCTCACGCTGAGACA----GAGATGGTGTGCAAAGAGAGTGCCAGGCGGAAAGTGTGTACGTGACACAGAGGAAGGCTTGGCTACCAGCCTTTC-ACAAAATTTCTACAGATGGAGATGGTGTGTTAAAACACCACGAGTTGCTTTTCATACCAATCAGCCGAATGTTCAGGAGAGAGGTGTGGGTGTACTGGAAGGA---CAGGATTCAAATCAG---GCCTCTGCCACGTACCTGGGCTCTGATCTCGAGTAAGCCACTAGCGATCTCTCAGTTCTGCAAATAGAATGTGAAGACACTGGCTGCACAAGGTAGCCTACAAGAAACAGTGGCACAGTAGATGAGGACCACCCTCATGCTCACAGGGAGTGAACCGAGTATCCTGCCAGGTGGCAGGCCAACAGGAGAGAAAATTCCAGCCCTCCC------TTTAAAGTGTTT-TCCTCATCTTTGAT--CCCAAATTTTTCCTCCCACTGTCCTAAGAACCCAAGGC--CAAAAAACAATCTTCTTATTTTTGTCACAGAAAAGGAAGTACTGGGGCACAAACATGTAACATTATTTAT-CACGGGAAATACAACACAAACTC----------CTATGGTCCT-TCATGAGCTGACACTAGCAAACTAGAGGGTGTGGTCAGCCGGTTTCACCTTATCACAGCCTATGGACTGATAATGAAGTCCCACGCCCACTCTGG----GCTGAAGGACTGTCAAGGTAAATAACAGCAATTCGCAGGAGGTTCTTGCGGATGAGAATATGAAGA--TCACTAGAGATATCCATATCCCACAAGTGCCAGCTTGATTTGATTTGAGCTGCTGGAAGAATATCTTTGGGA------AGGAATTAAAGCTGCAGTATTATTAACCAACTTCGCACTCAGATATCACTGCGTCTGGCGGAAACCCTGCCTTGTGGTGCTGCTTTGAAATGCTTAATTGTATgaggaggaggaggaggaggaggagaaagagATGACAGTTCAGAACACTGTTTCGTTAGTTCTAGTGTGTCATTAGAAACGATCTTTCATTTTTCTTATTTTTTCCAGAAAGATGTCATAAGTAAATAGCAACTAAAATCCCCTCCTGTTTCTTTGATTGTTGTTCTCTTGTTGATACTCTACTTTGCCAGTCATCTCAGAAGCGAAGCTGTGATTGGTCCCATGAATATGTATAATCTGAGAGTCTACACTAGCTTGCACGGTATATTAAACCTGCTATTGAAATTCCCACCCAGTGTATTATGGTGCTGTGAAATATGAAAGCCAAAATGAAGAGGTATCATGGCTCTGAACAACATATTCAATTTGATCCAGACAGCCCCTAAAACAGT-------GCATCTCTTTTGCTCTCCAC-----ATAGAGAAATATGGAT-TTATTTATTAATATCTTTTCTCCCTCTATTGTCCCAGCTTCTTGCCTTCCTTCACTGTCATTTTGTTTCTTTCAAGATAAATTTGTTGGACAAAGTGGGCCATGGAGTGGT---CTGGGATTGCCTGAGATACAGCAGGATGCT------TCAGTATG--GAATTTCCTTTGCAAAAATGAGGAGCCCTTGGGTCATCTGGAATGAGT----------------GGCTACTTTGTGTCTGGAGTTATTTCCCATGTTGGGTTCTCAGCAGCCAATAGACCAGACCTTCAGCATAC--CACACATTCCAATGAAGGAGGCAGAAAGGCATCCTGATAACTGAAGTACCAGGAAGAAGGCTACTATCAGAAGGGATGGAGC-TGGTGAGGCAATCATGAGGCC----------AGTGCCTCGATAGCCCTTTGTGCTTAGGTGACATTTGAGCAGGGTA-TGAAGGA-----AGAGACAATTTATAGGATGGTGCAAGGAAGAGTCCACTGGGCACAGGAAGGGCCCTGAGGCAGGAG
s HiC_scaffold_1 140117429 3591 + 233722169 atatatattccAGGAAGGTATATGTTTTGTAGAGATAGTCCA-AAAAGTATTACATTTCTCACTGATTTAAAATGAACA---TTAGTTTAACCAACACAAGTGAACACTCTTCATAGATGGCTGGATTCACTACTCGTTGGATTCACTACTTCCTAGATTAAtccattatttctgtattttacagTACGGCCCAGTGCTTCCTCAGTGTTCCTGCTTCATTACAGAAAATGGGTGGTGCTGACACCTAGCCTCAGACCGAAAATGATCCTCGATTTGGATTGCGCTGACAGAGATGAGAT-GCTGGAT--CACTTGGTTCTC--AGAGAAAAGTAAATGTGAAAAACCGATTCTCTTAATTGCATGAAATCCCTCTTCCCCCTTACCACAAACGCCA---CAGAATTTTCATGTCTTTGAAAGAAACTTTCTGATGCTAATCGCATAAATGATAAAAT-----------------GCCTCAG---TGAACCATATGCCCTGCAGCACCCAATCACACTGAGTTGTTTCTAGTGAGAAATCCGATGTTCGAGTTACAACCTAACTGGTACCCATAAATAATACACTGCCAGAAAGGAAGTTGGAAGAAATTTCTTAAGTGCTGTCCTAGGCTGTCTTAATCGCGGT-----CCTAACAGGAGAGTCATTATTTGGGAGGATGCGTGTGTGTTTTTC-----AAGCAATCAGGTTTTTCATATCCAGACAGCACTTCCTCCGAAGATGACTTGCTAACACAGTTGCATTTGCAAGCAGCATtaacatgattttattttgcatgtgTCA---TTTAGATTCGCCtaggagttttgttttgatttgtctgGGCTAATTTTGCAGCAGGACAAACCCAGAAAAGTCTTCAGTGGTTGCGACTCACACAAAGTTCGGCTGGCAG---CCCTGTGCTTCCTGAAATAAGTGGCCTGCCATGTTTCTATTAATTCATTTCTGCCAAGCCAAAATCCAATTTCAAGCTGGaatatctcctcctcctccttgcatTTACTGAACTTGTTTTgtaccaatacaaaaaaaaaaaaatatgtctggGAAAGAAATGTAACTTGAAAGTAGAGAAACCAgtagggtgtttttgttttgttttgctttgttttt-gttgtcttcactTCAAACAAATGTATGTTTAGGCAGCACAGACAGCGGTGGGTGTGTGGCCCTTCACTCATTTCCCCCAGAGAACAGTGTGTTAGCTGCTAGAGA-AGGGGTTACTTTACTCTGCAAAACGCATATCAGGCTCTCTGACAAGCAGCGGTCATTAAGGTCTGCTTT---GTGCCCTGTTC------TAGCAGCCTGGGATGCCATCCCTTGGGGTACTTTAACCCCATTTACTCTTCTCAATTTTCCTCTAGGTTTTTAGctataagaggaaaaagaaaagaaattaaattaacagAATCCATTTGGAAAATGAAGCTTTTGTAATGGGTTCCAGGAAATGTTTAGAGCAGCCATTGACTATGACCAGCATTTCCACTCA-ACCCAAGATGACTGGGGCCATGATGCTTTG-----GGC-----CAAACCTG-GATTTGAGGCCCCAGCTCTTGTGGACACCTGCACGCTAAGTCATGTACCCTATG-AGAGGGATGCACAG--ACC---CTTCCCATCGCCTCATTTCCACACTGCAGAACCTCAGTGTGCTCTTGATGGCTGGGCAAAACCTGCCACTGTACATGGGGGA-TGGCACTGTGTGTCGGAGTGCGTGTTA-TCCATG----GGTTTGATGCAGTTGGGCTCCCGTAGAGATTCCAAATTACAATGTGACCACACGGGGTTTACAGGCGGCTCACatgctgagagacagagagatgttTTGCCATAAGAGCATCAGGAAGATAGTACACACTCCATGCAGAAGCAGGCTTGGCCGCGAACCCTTCTGGAACATCTCCGCAGACAGCTTGGGTGTGCACAGAGGATGTGAATTGCTTACCATACAAATCAGCTCAGTCACTGGCAGGGATGTGGAGGGGTCCTGGAAAGAAGGCCGGACTGCAGTTAGAGGGCCTATCCTAAGCACCTGTGGCCTGATATTT-GCAAGCCAT---CTACTTCCATACTTCACACACAGGGTACAGTGACAC---------------------AAGATGAAGAGATGCAGGAGGCCAGGGAATGCCTGGTCCGCACGGTGCGTGAACCAAGCCCTCTGGCATGCATGTGAGATACAAAAGTTAAAAT---AGGATTCCTGTGGAgtttaaagtatttctttttttctttaatttctcaagCTTCTTCTCCTACTGTCATCAAAAGTCAAAGTagcaaaaa-------tcttatttttagacTACAGATGGGACTACTGAGGCACTGAAATACAGGGTTATTTGTGTAGGGCAAATATCACATACACCCATTAGACAGCCCGTGGTGCTATTCCAAATTCACTTTC-CAAGCTTCCAAGTTGGGGAGGCAGGTCCCGTCCTAGAACATGCTCCATGTTAGCTACAGAGCTCGAC-CTCCCTCAGGACTGGCTGAAGAACTGTCAAGGTAAATGCCTCAAATGCACACTGGGTTCTTGGGAACTATAACACAAAACATCCACAAGAGAGATCTATTTcccataagtgcctgtttgatttgatttgggcTGCGCAAAGGGTATCTTTGAAATATCAAAAGCCTTAAAATGGCAACGTTATTAACTACCCTCACATTTGGA--------------GTGG-----CTGCCTTGTGGTGCTgcttgaaaatgttttattgtatgaaaggaagga--------------aaaatataactCTTCATAACACTGTTTTGTTAGTTTTAGTATATCATTAGGGAAGAActttcattttgcttattttt-ctagtaaaatgTCACAAGAAAATAACAATTGATA---CTTGccgtttcttttgttattattctCCTGTTGGTACCTTACTTTGCCAGTCATATCAGA-GTAAGGTTGTGATTGACCGCATGAATGCGCATAATTTTAGAGTATATATCAGTTTTCATGGTACATTCAACCTGGTACTGACATTTCAATTGGATGTGTTATGACGCTATAAAACATTAAACTAGGAATCATAGGGTATCatgattttaaataac--atttaatttgGCTCAGAAATCTCCTGAAAAAGGTACAAAAATATCACTTTTGCTTTCCAtgaataatggaaaaatattaatgCCCTTTGTTACGCTCTCTCCTTTC-----TGTCCTAGCTACTCCTACCCCTGAACCTCCCTT---CTTCCATTGATGCTTATTTATTGAGTGA---GGGCTGTGTGGTCATCGGCTAAGATTTTCTGAGA-----CAGAATGCTCAGTTGCCAGGATGTAGAATTTTCTGTGCTAAAACAGAGAAATCCTTGGAGAACTGGGGTGAGTTGGCATTGACCTTGGGGTCTACCTTGTGCCAGG------------TGCTGGGTATTT-GCAGTGCATAAAGTAGACCCTTCTCATGTGATATACTTTCCAGTATGGGGACAGAAAAAGCACTCTGACAACATAAGTGCTAGAACAATGAATACAACAGGATGTGAGAGAAAGtgatgaagaagacaggaggacTTTTGTTTTGCGTGGCCCAACATGGCCTTCTGCCTAGGTGACATTTGAGTAGGGTGCTGAAGGATGTGCAGGAGTGAGACACAGGGCAGCTCAGGGGAGAATCATC---------GCAAGGTCCTGAGTCCGGAG

a score=26740
s chr3           153281452 2087 + 160039680 TTAGTCTAAATGTCTTTTGAGGATCAGAAAGGATTAAGAAAGTAACTTTTGCTGAATATTCTTTCAGAAGCTGTAATAATAAATAAAAATTCTATGGACATTGTTTTATTTT-CTTTGGAGTA--TGTTTTTATTTCATATATGT--ATAAGAAAATGAAAT----TCCACATTGAATGGCTAAACAACATGGCTTCCTCCCCTGGGTAAATTAAATAAAGCAAT-TATATGA-----------------TTATTTTAGATAAACATAAACTGTTATTACTGTTATGATAGTTGGTAGTTCTATTGCTTTGGGGACACAAAAGATAAATTGGTTTTTAAGAATGCCTGGTGTggggctggagagatggctcaatggttacaagcatggacagctttgtcccagaggaccggaattcagttcccagcatccatatcaggtggctcacaaccacctgtaactacagctccatgaattgacattcccttctgggcttcatgggagcctgctcataaacccactacatacacatgaataatgaaaaaaataTGCCGGACATTGCTCCCGGGGTGTGTCTGAGTCATGAAACCTGGGTGTTGCTGAGTCATGGAACACTGAGTCTTACCTTACTTTGAGACACACTGAAAGAAGGGTGCCTGGGTGAAAAGAGCAGAGGTTT-AAAGACCATTCCTGAGACAGCCGGTGG-----GGCTTCTGGGGCATCCCCACATAAAACAGGCAGTGAACACCTGCCTCTCCAAATTCCAATCTTTGTCAGCACGTGGTGCCACCAAA----------AGAGGCAC---------AGCTTCATCTCTGGCACAAGGCCAGCCATCCCGTCTTCCCTCTGGTGGCTCTCTCACCGGGTGC----AGTGCAAGGTTGTCAAGCAAGACTGAAATCTGATTGATTTCCCACTGGCAACCAGCCACACTGCTGCCTGGACTATGCTTTCGTGAAGTTAGCTAAATATTTAATGGAATATTAAGAGAAAATGTCTGTCTATGTAATGCAAACATATTGTTAGGCTGGCT-GAAGGGTCGTATCTTGATTAAGCTGAATGTCAGGAGCATCAGCAATACTTTCCCAGGATTCCCTAAATACGCTCTCAGTAGACACTCCACACAGCACCAAAGCAGCCCTGCCTTTCATGTACAGCTGGCATGCACCACGGGGGAAGAGCTGGGCC---AGCTACGCGGTGCCCGATTCT---TCTGTACATCTGGCTGACGGCTCACACTTCTAAAAATACAACACTAACTCGAGAATTGGTCTTTCTGACCCTCTTTGTACAAATATTTATAATTCTAGAATGTGCGGCAGATCTTTGTCGTTTATTAAACAAACGAAT--GTCTTCAAATGTCGTCATAATAACAt-------------------gtctatcttgacaagacagaactaaagcctaca---ggtagaggtggcagacaagtgaattttgcttcaaacagtagaattctttaaAGCGGTTCTCTGGCTTCTGGGGCT------AGGAGACGGTGGGGAGATCCTAGCTCTATCTTTTGTT------TGTTTAATATAGa------cctgat------atagacaat------------------------------------ttctcaataaggc------------------------------------------------------------------tctcttccaaa-gtgattct--acgat-------------------------gtgttaagctgatag--------------------ttaaagt-----------tgcccagcataATCAC---ACTGTGAAAGACTCACCATAATCTCATGTTAGGGCATTTTCT--TCAGCCC-------GACCTAGTCATGAACCATTTGTGTCCATTTCTCGTTTCTGCTCCTGCTCTCTGGCCACGTCCCAGGAAAGC----------CAACCTTCCAAGGCCTCTATAATCTCTCTATTCTAGACATGCTAAATCCACAGAGTCTCACAATGCATGCATTCCTTTGCTCAGC-----------ACAATGTTTTCAAGAGTCAGCT-------------CAGTTTTTTGTTTGTTTTGTCTTTTAGC--------------TTACAT-----AATTTCAATAGA------atagccatgtaggtggcttacattctttggct-ccaaggatacttctgatatcaacatcc-tgtgttgataaatttctgcatagatgtgttttcatttttcttgaatcagaattactaagctacatggaaactttctctgtaataatttgaagaatggttagact--tcttcagagcag-tggctcactctgcatccctaccagcagcatgagacgtctaggtttctccttcctg
s HiC_scaffold_1 140124433 2160 + 233722169 TTAGCCAAAGAATCTTTATGGGGGtagaaggga--gaaaaaata---tttgctgagCATTCTCTTACCAGCTGTACTAATAACCA----TTCCAGGgactttactttatttttctatggagaaaacatttttgcttcatattttctcctaataaaatcaaataaaacatatatCAAACAGCTAAACAGCACGGTTTTCTCCACTGGGTAAATTAAATAAGACAATATATGTGAAGTACTTTGTAACTATACCATGCTAAATAAATgtaaactattgttattattgttattgttattcctT-TACTGCTTTGGGG-CATAAAAGTTAAATTGGTTTCTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGCCTGACTTCACCATCAGGG-------------------------GTTGCTGAGACCTAAAA-ATCCAATGTTATCTTCCTTTGGGGAATAATGAAGGAATTATA--TGGGTAGAAAGAACAACGTTTTTAAAGAAAGTGTCAGAAATAACCAAATGAACATGACTTCTTGCAATACCCCAGACAAAAGAGGCAGCAAACACTTGCCTCTCTGGGT-CTGGCTTTTGTCAGTGCACAGAGTGACGCAAGCTTCCAAGCAGATGCACCCACGTTTTAATCTCATCTTTGGCTCAAGCCTAACATTCTTTCCTGCCTCTTCccagctctcctgcctgcctccttTAGGGAGATGTTGCCAAATAAGATTGAAAACTCATTGATTTTCCATTTTGATCCAACTACATTGCTGGCTGTATTATTCTTCAGTGATGCTAGTCAAATATTTAATGGAATCTTAAGAGAAAAATTCAGTCTGTGTACCATAAACATACTCTTAGTTTGCCTGGAAGGGTCACATCTTGATAAAGCTGAATTTTGGAATCCTGAG-AGTATCTTCATGGTATTCCAGAAAGATGCCTTCAGTCAACACCCCACATGATACCAAGGCACCATGCCTTTTTTTCCACAGCCAGAAGCTATTTAGAGTGAGACATTTGGTCCAAACCTCCATCAGGCTAATTCCTTCATCTGCACATCTGAATCACAGTttaggttttcaaacaaagatGGCGAATCTGACACTGAGTCTCTCTGACCTTTCTTGGGCAGACCTTTACATATTCGACATGTGCAACA-ACATTTATGGcttatgaaataaacaaataaatatttcaacattAT-ATAATAACATATAACAAAGTTATATAATAGCATATAATAACAAGACAGAATTA---CCAACATGTGGTGAATGTTGCAGGCAGGTGAATTATGTCTCAAagagtaaaatcatttaaaatgattCCCCAGCTGTGCAGACTTAACTCAGGAGATGGCAGACTGA-CATGGCTCTGGTGTTCTTTAAGAAGTGCTAGTTACAGAAAAGACTCTGATGACTTGGGAGACAGTCCGTCTAGTTACTGCCATTCTGTCTCTACTGTATCATTCCCAAAACCGCTGTGCAAATTCAAGCCCTGCTTATCATTTCTCTGGACTATGTTTATGCCTATATCTATGGTCTCAGTCTCTTTTGACTGTGATTCTTAGGgatctttctctttatttccttgtTAGCAGTGTCACTGTGATATAACTCACGTAAGTCACCCACTTAAAGCAGGCTCCGTGGAGTCTAGAATTTTTACTGTGCTGTGCGTTCATCACCACAATCTAATTTTGGAGACTTTTCTCATCATCCCAAAGAGAAACCCTGT----AACTATTTGTGGTCACTTTTTACTCTTGCTCTGATTTCTCGACCTTGATTGCAGAAGACAATTAACTTACAGTCTTGATAGATTTGCATCTTCTGTCCATTTTCTATA--------------AATCATATAATATGTGGGCTTGTGTGTCTAACTTGCCTCTTTTAGCATGCTTTCAAGATTTATCTACTTATCATTTACCAGTATTTTTACTGCCAGATCATACTGCATTGtgtgaaaatatcacattttaaaaatctatttgacAGTTGATAGACATGTTGGTTGTTTACA--CTCGGGTTGCTAAGAATAATGTTGCTTTAAACATTCATGTACACAT---CTTGTGTggatatatgttttcatttttcttgaagtagAATTACTGAATCCTATGTAATCTCTATGTTTACACTTTTGAAGAATGGCCAGTCTAGTTTTAAAAGCAACTGGGCCATTTCATATAGCCATTAGCCAGGTATGAtgactcagtttctccatcttg

a score=50161
s chr3           153283828 2454 + 160039680 tgttttagtttgctgttgctgcttacacttctcgtctcgcgcatcggaatctgctgcgtaagtgaagtgcatgaaaactgatttctttatttactgctggttggttttttacctttagctcttgtaatttgctgt-------------gtta--ttttgtgcaccacttgacacagggatccaaattcttttgttcttcatgtgcttatg-----atattaacatcattcactgggatgatgatttttATATCACA------------------------------CAAATATCTTTTGTAATTTACTGTC---TGTGGCCATGACTCTTAGACCTGGGCTACGTGACCTTCATCTCCAGAAG----------------------------CCAGGTCTCAGCAGCTCCGGT----------------------------------------ACCAGCTTAGCTTTGG--------AGAATCCCTCCAGGCAAGGAGCTGTCTGTCCCACCCCAATGCACGGCACAGCTAACGTAGA-AAAGCCCAGAGCGGCTGTACTGCAGCGCTCTGTACTCGCCTACTTTGCATTTATTGACATTTTGTTCTTTAATTACTTCAAATAAC-----ATGTATTTGCTTCACCTGATTG----GATTATAATCTTCTCGAGGATTTCCAGCGCCTTCCTTTCATTT-------TTGTGCCTGTT--AATGAACTATGTGGCGCCTCTAATAAGCTGGCATGCCTGGTGCCT-------------CTTTACATGATTCAAGGAAGCATTTATTTTTAAGAACACTGAGCCAGCGCctaggtgtgctggtgtgcacctgtaattccagcacatggaaataggggctggaagataaagaatttaaggtcgccctgggttacagagagaactggagactaacctgagctatgcccctgttcaaaaaaaaaaTCAATTAATAAAAAAAGAATATGTGTGGTGTTTTATAACTGACAA------ACTGATCTGTTTCCATTTCAGAGAACAGACAAGATTTACTTTGCCAAATAATACCTTTGTGTGTCCTTGGACCGCTTA-TACAGCTTTCCGAGGCTCATTTTTTAATGG------------------ACCTTCAGTATCTTTTCT-GGACAATAAACAATATAATAACTATTGATGATTGAGTGACCAGTTGCACACAATATCTGCCCTGGACACTCCACAC----TTCTCCCTTAGTCTTTCTGAGCAATGGGGGTGTTTTTCTTAGTTCTCA--------GGGTA--CCAGTGATTCCAATGTTGTTTCCCGTCAGGATACTGAAGAATACTCTCATTAGCCTATTTTGAGTTTAATAGTGTTCCCCCAGGTTTCTAGCTCTCTTCTAGTAAGTCTAAATTCACACAGAAGTGTA--------ACTTTTAAAAAGCACTAGTTTCTATGTCAAGCCTATGTCAAGCTACACATTTTAAAAATATCAAGTTTTGTGAACTGCACGGGGCTCTTGACTCTAG-------CCAGCCTCCGGCACAGGAAGCGCTCGGAGCAGCTCATTGTCTCCATCAGGAAGGAGC---CCCCCACT----------------GACGGGTTCTTCTAGCAGGCTTTAGGT---GGGATTTTCCTTTTTTTTTTTTTCCATTTTTTATGGTATACTTCCTTAATTGGC--TTTCCCCCACTGTAGCAGAACTTTTGGGTGAAGATGAGTATCTGGAAATCTAATTACACACCTTAACTATAGCCTGAGATGCTTCGGCTTCACAGATGCGCTTTGTCTGTCAAACCTGAAGACAGTTGGCAAATGCAGGCCATAAAGGTGGAGATTTAGGGCCCACCCGCCCGTGTGAATTGTTGCTGCCTTCCTCTGTTTATTACTTCACAGTTAATCAAGGAGA-AAATCCCAGGAGGGCCGCATCTTTTCCCCTATATTCTACACAGTGAGGGGAGGGGGC-AGGAAAGACTCGCCTT----TGTGTTTCTAATTGAAATAAGGTGTTTGGTTCACAAATCCTTGAGTGAAGGAAGAACACTAAATGTTCTAATCAATTTCTGAAATCTCTTTTAAAGTCAACAGAGCAGGTCATCATGGTATTATATCTATGTGTACACAATCCTTGTA-TACAGTCATTTCTCAGTAATTGCATGC------------AATTAATACTGATATTCAGAAACAGAACTCCTTAGCAGCCACCCACACCATATTTTGACACTAGCTTGGCATTTTACCACTGCAAGCAATTCTA-TGAGATTACTTTGGAACATCAGAGACCTGATAGTAGAATAGAACATAGTT-CTTTGCTGAGTCTCAGAGGCATAAAAGATTAAATGTACATAAATCTCAAAACAACATAATCACCAACAATGAAGAAAAAAAACAAAGTGGCTTAAACCAGATAAGCATTCATCACCATGAGGCATCACCCCTAAACTCGGGACAACTTCCAAGAAGATAGGCCCTCCGGGTTCAAG--ACAGCACTTAGTTGCCTTATGCAGTTACAGACATAAGTTCTAAATGATTCTGGATACAGGAGTCTCTAAGTCTGTAAGATAAAGTCTGACATGAGTCATATCCTCAGCAAACATGG-CACCAA----------CCTGTTTCCCTAGACATCTTTTGCCGAAAAATACGT----TTCACATGTCTGTGGAATATCTGAAAAGGTTTA
s HiC_scaffold_1 140127209 2459 + 233722169 tatttttttttattgttgttgcttg--------ATGTCAAACATCAGAAATGATTGCCTAATTCCAGGTCAGAAAA------TCCTGTATTTTATTCTAAG-AGCTTTATACTTTTAGTTCCTATATTTAAGTCTAAGGTTCACTTAAGTTAATGTTTGTGTATCACGTGAGGTAGGGATCCAACTTAATTGTTCTTACACATGCATATGCAGGTGTCCTAGCATCATTTGTTCAAAAGGTGATTTTTCTTGTACATTAATCTAAGGGTTCACTGGACTTCTTATTCAAATTTCCTCAGCAGTGTACTGCTCCTTATGGCTGTGGATTTTAAATTTGGACTTTGTGAATCCCACCCCCAGGAGATCTTTCATGAGAAACTTCACTGTGTTCTTATCCTTCAGCACCTGCTGTGATCCTCTCACTTATTTGCTCACACTCACTCCTTGGAATCACTAACTTACAACTGATAGCAAGAAGAACCCTTTATGTAAAGGAGTTACCAATTTCAACCTAAT-CATTTTATAGCTAATGGGAATGAAGTCTAAAGAAACTAAGATTCAGTCCTTACTATTTGCCTACTTTGCATTTGTTgacattttgttctttaatta-----agTAACTccttgtgtatttgttttatctGACTGATTAGATCATAATTTTCTTGAGTATCTATAGTAACTTCATTTCATTTGATATTTTGGTGTCTGttgcattaaaatatatacttactCTAATAGGCTGACATTTCTATTGTCTTCCTAAATTGTCTCCTGATATTATTCAGGAAAGCTTTTACTTTTAAGA-----------GCATCTAGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTATAACTGGCAATAATGAACTAGTCTGTTTCCATTTTACCAAAGAGACAGGATTTAATCTTCCAAAAGACACATTTAGGTATGCTTGAGAAAATTACTAGATTTTTGTGAACTTCAGTTTCAAGCTGTAAAATAACCTAAAACCTACCTGGTGTGTTTCTTCTTGGGTATTAGACAA-------GTGCTTAATG-TTTAGTGACTGCTTGTACATGGTGTCTGCCCAGGCAATGTTAATTAATTTTATCATATAGTCATTCTGATTACTAGAAAAATTT--CCTGGTTAGCATCCGTCATGAGCAGCACAAGGACtgaaaagtatttttgttttcatccaCTGAAGCAGGTCTTCATCAGCCC----TTAGTTT-----------CTCAGATTGCCAACTTTCTTACAAAAAATATAAAGGcatagaaaaacacacacaacaaaTACCTAACAACCAATGGTTTCC--TCCCACCCCACATCAAG--GCACATGTATAAAGAAGCTGGTTTCATTAACTAAGTAAACCTTGTGGTTCCAGAGAAGGACAACCCTATGTCTAAG--------------AGCATACTCTCTCCATTAAGAAAGAACATTCCCCCATGTAAAGCATCGTCCTTAGAAGAGTTCTCCCACCGATTTTCAGGTTTAaggtttttcctcttctttttgaagC------TGAGTAAAGCTGGCTTAATTGGCATTTTCCCCTCCTGTAGCAGAAGTTTGGGGAAAGGATATATATCCAGAAATATAACTAGATATCTTAACGGTAACCTGAGAAGCTTAAAATTCACAGGTGTACTTTATCTGTCAAAAATGGAAACAGTTGGCAAAGGCAGGCCATAAAGGTGGAGATTTAGTGTCCTACTGC----GTGAATTGTTGCTGCTTTCCTATGTTTATTACTTCATAGTTAATCAAGGAGATAACTCCCAGGAG-------TCTTTCTTCTTATATGCTACATGATGaggggggaaggagaaaaaatacTCTCTTTGTAACATATTTCCAATTGGAATAAAGTATTTGGTTCACAAATCTTTAAATGAAGGAAAGGCATTAAATGTTCTAATcaatttctgaaatcttcttt-TAGTCAGCAAACCAGGCCATCACATGATTATCATTGTGTCTGTACAGTTCTTTTAGTACAGTAATTTCTCAGTAATTGTATGCTTATGTGCCCATAATTAGGACAGCTACTCAGAAATAGGACTGCTCAGCAGCCATCAAAACCATATTTCTGCATTGGCTTTGCATTTTGCCATAGATAGTCATTACACTGAAATAATTTTGTGACATTGAAGCCCTAATTATTGAGCAGAACATAGCTGCTTTGATGAGCACCAAAACTACAAAAGACTACATGTATATAAGACACCAAATGATGCAATTACCAAAGATGAATACAGCA---AAAGTGACAGGAA-GAGATCAGGA-CCAGAACCATTTTATAGCACCCATCATC---------CTTTGCAG----CATGCTCCCTGTGTGCAAGGAGCAGCACCTAGTTACTCTGAGCAGTTAAGAGCTTAGCCTCTAAATGATTCTGGATACTGGGGTTATCAGGTCTTTAGACAAATGGCCAGCATGATGCATCTCCTCAGCGAATAAGGTCATTAGGGGATGTGATTATGTTGCCCCAGAAATGCTTGACTGATAGATTTGCAAAGTTCACAAGT-------ACATCAGAGAAGACTCA

a score=34389
s chr3           153291840 1171 + 160039680 TGATTCATCTACTTAGAGAC-CATGGCTAATCT--GAAAGTGGAGC-CTCCCTTAGTCCAGAGCTGCAGCCTCCTGCACCCACACCCAGGTACTGGCCTAGGT-----TGGGTGTGGTGGTGAATTCCTGTCTTTTTCTCTAGTTTGACATAAAGTAAATTGCCCTGATAGGATTTAACCAGAGCGTAGCCAAGCATGACCCAGGCAAT-CCTGGACTGAAAAGGTTTCTATTTAGTTCTCTGTGTGTCTAAATAAGAAGAGGCGACTTCACCGCTGCTCAAGAGTCTGACTTGA---ACAACACAAATCCAGTCCCTTTAATCCTGTCCTTACTGGGACAAGCCAAGCAAAGGGCTGGCTGATGTTTTAATGTGTGTGTGGTTGGTCGGCTTCCCAGATACTAT-GCTTTTTGGCTTTTGA------TTTTATAAGCTGGTATTTACCAAGCACCTGGATAGGCACGATGCCAGGTCAGGCAAGCAGCCCGTGCCTTGGGAAGAACACATCTACTTTCACCTGGAAGAAAAAAAAATCTTCATTTT-TGAGTATTCTGCAAGTTTCCACTTGGCTGTTTTAAAACGGCCCTGGCTCTGTCA----------CCAGTCTCT-TTTTCTCTTCCCGTTAGCTCTCTGCAGCTAACCTGCAGGGAT------------------------CATGCTGTCCTTCTGCTCCTGAGTTCATCCGCTGACGTTACCATTGTCTGCAGCTCCTCCAGATGGCAGGGGCTTTGC--------TAGCGACGAAGCTGGGGCATAGCACA-GGTGACAGGCG-GTGTTTGGCAAGGCTGCCCCCATAGGAGTCATTATTGTGTGTCCCTCTGCCCAGGTAGTCTCACCGTGTGCTGGCGCAGGCAGCCTTCCAGTCTGAGTAGG-------------TTTGATCTGTAGATCTTGGGGCCTCCTGGGCCTACTTTGGCATCCATGTAAGCTAGAATCTGCTTCCCAGAGAAA----CAGTGTTTGGATTCTCTTTGTACAGGTATAT---TCTTTGCCTGGCCTCTTTCAAGTATTCATGAAGTTATTATTCCCTG-CTCCATGCCTCGAATCTCAGAGGCCATTTATATGTTACATC---TGCCCAAAATGCTTACAGTTATTTTCAAACTGGAGTCATCAGTGTACTCCAAAAGACAGCAGCTCCTTCCTTCTTC------------------------------TGAGTCAGGCCCACA-GGGCAGCAAGGGTATAT----GGGCGGAGCGTCCTGGTCCTCT
s HiC_scaffold_1 140136112 1239 + 233722169 TAATTCAGACACTTTGATATTCACAGTTGATTTTCAAAAGCGGATCTCACCCTGAGTTTAGAAGTacaactttctctgcctcctcctaG---CTCTCTAAGGTAGCCCTGGAGAGGGCGATG--TTAGCATCTTGTTCTCT---TTGACATGAAATAAATTGCAATGATATGATTTAACCAGAGCCCAGCCAAGCATGTCTTAGGCATTCCCTGTGCTACAAAggtttctattttgttctatatTTGTCTGAGTGAGAAGAGGCAACTTCATTGTTG---AAGAGTCTGACTTGACTCACCACACAAATCCAGTTCCTTTAATCCTGTCCTCACTG---CCAG-TAAGGAAAGCACTGGCTGACTTTTTAGTGTGCTTCCAATTGGTCTACTTCCCAGATCTCATCCCTTTTTGGCAAATGAAGGTGGTTTTATAATATAGTATTTACCAAGCACTTAGCTATGTAGAATGCCGGTTCAGGCATGAAGCCTATTGCTTGGG-AGAAAATGTCTACTTTCATCTGG--------AAAATCTTAATTGGATAGGTATCCTGCGAGTTTCCACGTGGCTATTTTAGAACACACCTGGGTATTTAATATTAATTTCCAggcctctcccttctcttccctttggcTGTCTGCAGCTAAGGCATAGCTATTTAATCCTTTTAATCTTTCATCAGCATCCTTTCTTTGGGCTCCTGGATTCATTCACTGTTGTTGCTGTTCTCTGCAAACCT---------CAGGAGCTCTCCCTGTCTTGTAGTGGTG-----GGGACACAGTGCGTGGTGCCAGGTGCGGCTCTGTTAGAACTGTCCACAGAGGACCTGTTATC-CGCGTCCTTCTGCACCGGCAGCTCCAACCTGGACTTGC-CTTTCATCCTGCCAGACTGCGTGCGTGGCTGGCCTGAATCTAATTTGCACGCTACCCAGTCTACTGGGCCCACTTTGTC----------------TTTTGCTTCCCCGAGAACAGCTCTGTGTGTGGATTCTCTTTCCCCAGATGTATCGGTCGGTGCCTCGCCTTTTTCCAGTGCTCACAAAGTTATTATTCCCAGCCTATGTACCTCAAGTCTCCAAAGtcgttttcattttatttctgttgcttgAGCTGCTTACAATACTTTCCAAATTGGAATCATTAGCGAGTTCC-AAAGAGAAcagcttctttcttttccatcccAGTCATGAATAAGGATGCTAAAATAAGAGTCAGACCCACATAGGCACCAAGAACAGATTCAGAGGCACAGCATCTTAATCCTCT

a score=18836
s chr3           153293898 1440 + 160039680 ACACAAAAAAAATGGGAGAAAAAGGAAAAAAAGGAAATAGAAACCAAGGATATTGAAATTTC-----CAGGTTTTCCGATCTGCAAAATGGTGCTGAT-TTCTAATTTACAGTTAAGGTTTGTGTGAGCTGAGATTAAAGCAACAGGAAGTGAAGTTCATGCTGCAAA-TGCTAAGAATATTATTGCTAGTCACAGCTGCAAGTGTAATAACACGACTGTTATTGTCATCATTATTACTATTCTGCATTATTATGAATGTTATTGCTCACACTGAGGCTGTCTGATCTGGCCTGTCATGGACAGT-----GGTGCAGAATTCAAAAACTTGT-----CAGTTCAGTAGATGAGAAAGCCACGGGTGGTAGTGCCTATCCTAGGGTGGACAGGGAGATGATACTGCCTATCATCCTAGGGTGGACAGCATCCCCTGGAGTTGCTTCACAAATCTACTAGGTTCCACTGTGCGACATTGTCATGTATCTCAGAG-----TCATAACTGTCTA-------TAGGATCTGGGGTCCTA-TAGAGGGGCTGTGGTACTCAGACCTT-----------TTCGTCAATTCAGAAACTACAGGTGTTATCTTAACTT--------------GGAGTTGGAGTGGGTTGAGACAAGATTCTCTGTTTCTGAAG-GAGGTCATCCCTGCCTAGGGTGTTTACAGAAACCCCGGGGTCTGTAGCACAAT----AAAGGCCTG---------------------------AGAGAAAGGACTCC----------GTGCTATTCACTT--AAGGCTGATGCCATCTTCTTTCTCGT-------------TTCTCCTTTGTGGCTCCTTCATAGCTGGTCAGCAGGTC---CACTGTAGTCTGGGCTTTGA-ATGTTACAGTTTACATAGTGTGTAACCCCATGAAGATGTATCTCCATGTATGGCTTAAAAGACTACTGATATGTACACATATGTATTCCGATTATGTATACAGCACTGCTACATGTATGTCCAGCAGCAAAACACTCCTTCATGCTTCCAATG--------------------------------------------------------------CCCTGTGTTCTCCCGCCTCATGTCT----CTCTCATGCACAG--------ATTTTAAATGGCAACTTGATCT---GGCCCCAAGTTTAAGAATCATCTTTGATAA-GCTTTTCCTCACTCCCCTC-----ATCCATGGGTGGGCG-AAGAAATCTGAATTGCAAAAGAACCTTCAAATTCAACTAGTTCACGGCACCAGGCGAAACCTTGTCATATCGAGGCCATCCGTGCCCCATCACAACGCTCCCAccctttctgctcctgcttcccgccaagccactcctcagtagcatccagagaaacctttcaaaacaccaatcctgatttgaattgtttaattgcattctattactcttacaatgaagttcaaagtcctcatagtggcctaaaaggcactgcaCAGCCTCAGGTTCGTTAAATGCAAGCACAAACTGCAACGGGGATAATTTCCCTAACACTCTGTGGCTCTCTAAAATTAACATGTCCAGTGTTTACTGACAGCCAAGTTTGTCTCCGTCAGAGCACCT
s HiC_scaffold_1 140137659 1517 + 233722169 ACATAATTACAATGAATGCAAAA--ATAACGATGAAACCTTTACTTGGGATGTTGGCCTTTCAGCCTCACTCTCTTC-ATCTGTAAACTGGCACTGATATTCTAACTTGCAGTTAAGGTTTGCATAAGACGAGGCACAGACAGTACTCCGAGCAGTGCCTGACACAAAGTGctaaaaatgttattaataataataactgtaAGCATCATAATAAAATTAGTATT----------------------ATTGCTATGA------TCTCCCACATCAAACCTGATTAATTGGGGCTACCTTAGAAACTCTTAAGTGGGAAAATTCAGAAAGATACACCAGCAG--CAGTAAGAAAGAACACCATGGTAAAT-GTGGGTATTGCAA--TAGGCAGCAAAA-------GACATTTATGCAAGTGTTTAC----TTTGCTGAA-------TACAAATA-ACTAAGCTACAATGTG-AACAGTCTGTGCTGCCTAGGAGGGAAGTGATAGCATTGCAAGACAGGCCGGATCTGAGGTTCTACTGGAGGAGCTGTGCCACTGTGACTTTCAGTCCTGTAGTAAATTGATTGAGAAGCTCCGGGTGTGTTTGAAGCATCTAGGAGGCTAGCGAAAGCTGGGTTTGGATATGATCTGATTTGCTACATCAGAAATGAGGTTATTCCTGCCTCGAATGGTTGCGGAACCATTAGGGTTTGCAACAAAGTTCTCACGGATCTGCAACCCAGTGACAGCGATAAGCAGAATGGAGAAAGGATTTCATGCAGCTAAGTGCCCTTAACTTTAAAGCCTGATACTGTGTTCCATTTTGCAGGTGTAAAAATGTCATCCTTT-----TCATAGAAAGACACTCTGAAGATTTCTCCTCCCAGACTGGGGctcaacatattttaaattctatagtGCTTATTCCTGTGAAACCTTATCTCCTTCCACGGCTTTAAATACCACCGATATGCTGATA-----ACTCCAAA----------------------GTGTGTCTAGCAGTAAAACACTCCTCTAGGCTTCGGACAAATATATCCTCCTTCCTTTCATATCACTCAGGAGCCATAAATTTAACCCTTCCCAAAGGGACCTCTGAGTTTTCCTTCCT---GTCTTGGTCTCTCAAGTTCAGTAGATGACATATTACATGACAAGTTGATTTATTGTCCGGGAAGGTAGGAATCATCCTTGATAGCTCTGTTCTCCACTTCCCTCCTATTATCTATCAATGAGCTTCAGTAATTTTaactcaaaaatatatttcaaatcaaACTTTTACTAGTCGTCGT------CCTGGTCATATCGAA----------TCCCACCAAATTGACCTCACTCCTCCTGCTCTTGCAGCCT-CCAGTCCCTTCCCCAGTGGCATAGGGAAGACTCTTTTACAACATTAATCTTACTTAAAATTCTTCCATGATATTCTGTCACTTCTAGCATGATGCTCAAAATCCTTATCATGGCTCTCGAGTCCCTACATAGTCTCGAGTTTGTTAAGTACAAGTACCAATTTCAAAGGGAAAGATTTCCCTGTCACTCTCTGCCCATAGAAAATTAACGT------TGTATGCT---------CCTTATGTCTGTCAGAGCACTT

a score=36690
s chr3           153295817 1761 + 160039680 GTAATTGGCTACTTCTATCTCC---CCTTCTAGAATCTAT-ATCCTTAAGGGCATGGGTTCTCTACAGCTC-TGTTTCATCACATTCTCCAAGC-----------ATATAGACAG-----------------------------ATAAATAAATGTGGTTAGTGCATGATC-AGAGCTGCAAACATGCACATAGCTTCACCAACCTTTGTAAAACACTGATTAGAAAGAGATTTCATTTCCTGGTCCCTGAAACTAAAAGGTCTTGGAATGACTGCTTTGTATTTGAAAAAAATGTGAATTCATATGTACCCTGGGTGTGATCAGGAG-------GGCTATGCCGATAGCCTTTCAGGGATT--------------------CA--CAATGGTGGGTTGCTTTTCTGTTCTCTGGGATGGATCACCTTCTTTGGTCTAGCTCTGAAGCTTATGAGCCCCAGACTCTAATCATGGCTCTGGAACTCATAGCTGAATGCCAGACAAGGGAAGCGTAGAGATACAGAGTATCTACCT--CAAATGTACGCTTTGCATTCTAGGAGGAT------GTAGCAGCGCGCTGGTGTCTGACTTGATTCCAAGTTACAAAGT--GAAAAGT-TATTAGAAGTAACCCTGATCCCACATTCTACTTGACCCTATGGCATCCGAGTTCATCACAG----TGGGTTCTCAGTCAGAAAAGCAAGGG-CTGGGCCAGCCCGTCAGAGC-ACGTTCCCAGCAGAGCCTTGCATTGCAGCACATAGGTTATTACATCAAATTAT-TTACTGAGCTCCAGATGTTTCGGATCCCGACCTTCCCTGAGTAAGTGGCTGTCCAAGACAGGCACTCGTGTCCAAA--CAATGCAGCCGGCACTTAACTGGAGGCTTCCGCAGCTGTCGAATGTTCTCCGGTGA-TCTGAAATCGCTTTTCATCTCTGTCACAATCACACACAAATGGGGCATTTCCTCTCTGTGTTGTGATTAAAAACTCAA----AAGAACTTCTGAAATCATTACCAACTTTTCTGGGGCTGAGTTGTTCTCCCGAGCAGCAAGCTGATTGTCACAT-------TATCGGCATTTGGAAAATGGCAGCATTCCAGA-CGTGCCCACGGAAAGCAAGACTGGGACATCACAATGGAAGCAGCGG-AAAGGAGGGTAGGGGCGAGGCCCAGATGGCGGCATTTCCCATCAGACATCGGTGCCTCTCA-----GGGCTGCCACATGCAACTGCAACCCTTTAATTGGATTGTGGCATTCCATTAATATCGAGGACCGCTGTCCCTAATGAGC-----------AAGCAAACAGGAGGTAGCTTATCACCACGCCTCTCATGTCTAACCTGCCTATCTACTAAGTGGGTATTATTAGGAAAGAATTAATTGCATTCCTGTGCGTACCGCTGAGTCTGAGTACACTCGGTTCTTAGGGACATGATTACTTGAAATAGCTGATCATTTCAATTGACTACTGAGAGTAGCTACCAACCATTAGATAAAAATGGTGTGCAgtgtgtgtgtgtgtgtgtgtgtCCGTCCCAGACAAGGGAGATGCGTTTGATATTTGTACAACTCATGTTAGAAGACACAGTAGCC---------CCAGCTTTTGCCTGCCACAGGTAATCCCCTAAATTAGGATGTAAAT-AGTGGAAGTAATCTTTTCATAGCAGGGCCTGCATATTGAGCACTTGT--------------------------------------GTCACACTGGAACCTGGTATCAGTCTTGTGGCACTGCTCACAGCTTGGATGTGACAATGTAGGAGAACATTGGCTTGTCTCTGAG-------------AGCATAATGTTATATGTTCTAGATTCACACTTGACAGAGAACAGAGAGCCC-AGCCATCCTT----CCAGCTTGC----CCTTCCAGCTTGGACAt
s HiC_scaffold_1 140139205 1853 + 233722169 GTAACTGTGTAGTTATACCACCTGACCCACCAGACTATGTGATACTTGAGTATGTGGGTCATATGCAGCTTATTTTTCATTACATTCTTAGGGCTGCTTTAGTAGCCAAAGACAGTACACGTTCAAAAGATATTTACCGAATTTACAAATGAATGAAG--AGAAAAGTATCTATAGTTACTAAAACGAAAAGG---TGATCATCCTTTGTAGGACCTCAATGAGGGGAAG--TTACTTTCTtagtttctgaaatccaaagatctGAGAAATACTGCTCTGTGCTTAAAAATGATAC--ATCAATTTG-ATCTTGGATGTCACTAAGAAATGCTGAGGTTTTGCAAATGGCCTTTCAGAGCTCGTGGGAGGTGCCAGTAGGAGCAGCTAGTGATGGGCTTGCACTCTACTGTCTGGGATGGAgc---------ggttttgttttg----ttatg---ctttgtttctgttc--tgctctgttttgtttggtatAACTCTGAGTGAGGG---TCTACA-ATTCAGTAAATGTACCTGACACTCATAAGTTTTgtattctaggaaaaaaaattagtgacattatttttttgtctgatttttcaaTAAGAtctaaagatagaaaaatatagtTAAGGTAAAATAATGCCCATTTACCCACTGGCTCTACAGTCTCCTAATTCATAATAAGTACTGATGTATGAGTTA-AAAAGCAGGATTCTAAGCCAGCCAATCAGATTTCCATCCCCAGTGGTAGCTTGCATTGTAGCACTTGGATTGTTACATCAAACACTGCTGCTGAGACCCAGATGTTCCAGCTCCTGACCTTCCCTGAGTGAGT------------------CTCCTGTCCAAAAACAAAGCAGTTGGTACTGTACTGGAGGATCCCTCACTTGTCAAATGTTCTCCAAAGAATATGAAATTGCTTGTCATCTTTGTCAAAATTATATCTGAATGGGATGTTTGCTATCTGTATtgtaattaaaaactcaattaaaagaaattttgaaatcatTATCAAGTTTTTCAGGCATAAGCTGTTTTGTGGGAAAGCAAGCTGTTTATAGCTTAGGCATTTGCTAGCATTCAGAAGATGGATGGGTTCCAAAACTGGCCCAAGGAAAGGGAGAGATGGGGATCAAGGTAAAAGCAatgataaaagacagaaaaagcaagccGCAGACCACAGCATT--CTGTTTGACAGCAATTCCTCCCATTCTAGTATGATCATGTGTAATTGCAATTCTCTAATTGGATTGTGCCATTTCATTACCATTGAGGACCACTGTCCCTAATGAGTCTTTTCAAAATGAGCAAACAGGAAGTAGCTTATCATTATGGCTCTCATTTATAATGTGCCTATCTATCAGATGGATATTATTGGAAAA--ATTAATTGCAGTACAGTAGATATCATCAACTGTAAGTGCACTTGGTTCTTAGGAAAATGATTAGCCTAAGTGGCTGATCATATTAATTGACTACAGAGAGTAGGCATCAGCTAC--GAAAGAGACCAAGTGCA---TATGCACAACTGAACATGAAACTCTCGG----------------------TTGCATAGC---TGTTGGATGAGAAAGCAGCCATGCCTATGCCAGCAGCTGGTTAAGCCAGACAGTTCCTTAAAATATGACATAAACAAATAGCAGTTATAATTCAATAGCAGGCTCCCCTTAGTGAGCACTAGCTGTGTCCTAAAGATGAGGCTACACACTTTAAATTCATAGTCACACTTAATCCTCACATCAGTCCTCTGAGATATCACATAG------------------AGAACAAATCAGTTTGATTCTAAAATGGGCCCCCTTCATCATAAGGTTGTACATTCTAGATTAAGGCTCACTAGCGAAAAGAGTCCCTGAGGCATTTCTATTATTAGCTTGCTCATCCTATCAGCCTGGACAT

a score=36554
s chr3           153303129 1301 + 160039680 TGAAGTTGCCTTCCGTCCTGTTGTGGCGTATTAAAAAAAAAGCGCTCATGAtgccaacaccgtgtccttgcacttccaggtctcagaact-atgaataaaggaacgtcttccctctcaattgacccagtctcaggcattccatgatggcaatagaaaGCAGGTTGATGCCACCTTGCTCCCCGAGGAGGCTACAGCAATACCATGGGGGAAC-TTAGCCCGTTGGCTCTCTGTGCAAGGCATTT--GAAAGTTTGCTTCCACATACCAGTAGCTCCTGAAAGCAGTTAACTGGGTCACTTGCTCAGCTTTCCTTAGTGGTAGATTAATTAGCCAGCTGTAACTCCCGGATCTCTATTTTTAAATAATGACTTGCATAAATCTCCAAAGACAAGAACTCACCACTGGTACACAGCATAATCCAACAGCTGCAAGTTATTATGCCCAGTGGAAATTAAGTATCTTTTAGGGAAATCATGTAAGATCTCATGATAAATATGAAATTAACCCCGGCCACCTCTGCGACCA----------------------CGTCCTAATGAACAAAGTCCCTGGGGTCCTGAAGTGACAGTGGAATCCAC--------GGAAAGG---TAATCCTCTATGAGTATGTGAATA--ACAGAGTCTTTGTCCTTGGTTGGGAGAGAAG--CTGGAAACCCAACACTGATGAGCATGCCCACAAGG-TTCTCCTTCCACTCCACAAACCCAAGGT----CAGAGGCACGCTT-----CAGGGACATAGACAAACCAACCACTTCATCACTCAGTGACTT-TTGTCTCAGCCC------CTCAAGTTCATGCT-CTCTTTGGTCAAGGAC-ATTACATTCTGGTGCTCT---ATTGTTTTGGTAAGTTTTCAGTTAATCAGGTTT----------------TTGGCTTTTCCTTCTCGCTCCCCCATTTTATGTTTGGTTTGGGTTTCCATAGTTTCCCAGGGTTGGGTGTTTGAACAATGGGTT-----TGGAGCTCAACTGTCTACACAGCAAAGGGA---AAGTTTGCCAGGGCTAGGACAAATACCTCTGACAA----CATTTTGTTG----CAACAGGCCCTTGTGTCTGAGGCACCGTTCAACACGT-GGAGCCATTTATAGATGATGGTTTTAGCACAACAGTGGTCAAA--ACTGTTATGGCCTCCACTTGAAAGTCATGGTCTGTAGGGTTGGTTACTTTCA-----------ATGCCAGTC--------AGCATAGGAGGGA--------------GAAAATACAATGATGACGCTCGCTGTTGTTCTTGAAGGCTTATGAAGACT----------ATCCCTGATTTCCTGCTTAAG-------GACTAAAACCCCAGAACCCACAACAAGAAGGGGGTGGTACTTGAACACCAGTGATGATGTCTGGGGTCAGAT
s HiC_scaffold_1 140147292 1397 + 233722169 TGTGGATGCCCTTGCACCTTCTGCCAGGTAATGACATAAGAATCCTCAAAATGTTGCCACCATGGCCTAGAATTTCCCAGCCTCCAAACTCACAAGCAAAATAA--TCTTTCCTTTGAAT-GACTCCATCTCAGGTGTTCtgttacagaaacagaaaacttaTTAA-GTCACAT----ATTCGCTGAGAGCACCACAAGGCCACGGAGATGTGTTAGT---TTAATTATTTGTACAGGACATTTTTGAAAGTTTGCTTCAGAGTAACCATGGTTCCTGAAAGCAGTTAAGTGGGTCATTTTCTTAGCTTTCCTTAGTGGTAGATTAATTAGCCAGCTGTAACTCCCGgatctctatttttaaataacGACTTGCATAAATCTCCAAAGACAAGAACTCACCACTGGTATACAACACAATTCGGCAGCTGCAAGTTATTATGCCCAGTGGAAATTAAATATCTTTTAGGGAAATCATGCAGGATCTCATGATAAATATGAAATTAACCCCTGCCACCTCTATGCCCATCTCATTTCTTCGCTTGCCTGCTATCCTAATAAGCAGTGTCTCTGGGGTCCTGAAATGACAGCCGAACTGGCAATATTTAAAAAAGGCATTATTCTTCTATGAGCATCTGCAGAATACACAGCCTTTGTCCTTGCTTGGGCTAGAAGCTCTGGAAATCAAACATCAATAAACATACCCAATAGGCCCCTCCTTCCGTATCATGAACCCAAGGTCAGACAGAGATACTTTTAATTCCAGGGATGTAAACAAACAAAGcatttcatcattt--taatttgcTTCCTCTGCCAAATATGCTCAAATTCACACTCCTCTTTCCTTCAGATCTAATACATCCCGGTTCTCTGtcactttcttctttatttataagCT--CCAGGCTTCAAGGAACATGTGACCTTTGCTTTCCCTTCTCGCTCCCCATTTTTGCATTAGGTTTGGCTTCTGGTCATTTGAAGGGGATGTG-------ACACTGAGTTCTTAATCAGGCTGAAC------CACAGTAAAAGGATTCAAG--TGCAGGTTGTAAGTGACACCCCCTGGCCAAGCTGCATTTGGAAGGGTCCAACAGTCCCCAGTG---------ACATTCTGCACCCAAGGACCACTCGTAAATGCATGTTTCCTAAAAAGGAAGCTCACATGCTTGTCATTTCCACCAAAGGGAGGACATGGTTCAT----CTGGCCACTTCCAACAAAGGGCTCATGTCAGACCACTCTGTGGTTTGGGCTGGAAGTCTTTCTCCATGAGGGTTAAAATGGTA----TCCTTAGGGTTCCTAAGTTATTGTGAAGACTTGTCTAACAAATTTCTGATTTCCTGCTTGAGCACCCatgatcaaaattccagaa-----gaggaaaaagaagcagcaccTCAATGCAGGCATTATAATCCTGGGTCAGGT

a score=41802
s chr3           153305074 1737 + 160039680 GAAGCAGAGTAAAGC-----TATGTAAAAGCA-ATCGGAGGTGATGT-CAACATAGTCCCTCTGTCTGGAGAGGTTCGTCTCCACTCCAGCTTGTCACTGAGGAGTGAGGGGGGGGGAAGAATGCTGGCTTACTAGTTCTCTACATTGATAATAATATC-CCTAACTGTACATGCCC--CAGTATGGCTCTGCTGTTCCCAGGGAGAGCTGACAGCTCCAAGGTGGCCCGGCAGCTCAG------------CAGCTCAGTCCAGGACTGTCTGCAGCCAGGACCCTCACCTTGACCTTTGACCGCT-ATGCTAGGAAGTTAACATGGTTCCTACCTCCAGCTAATAG-TGCCCTCCCATCGCTGAACTGAGTCCACCTTATCAACTTTGTGAACTTCAGTCTTGGGCATAAAGGTCATTACTGTGTTCTGCACCTGGAATCACACTGTAATGAGGCAGATCACATTCTCTCTCAGTCAATGAGGGGG-AAAGAGGCACACAAAATGGAAATTACTCCTCAAATGACCTTGCTAGAATTCTGCATCTGGCTGGCACAGGCTCTATCTGGATGGCCAGGAACTCATGTTGCAGCTTTGCTGTTGAACCACCCAGCCCAATCCCATGTTGGCAAACATGCTACTGTGGAGCATATGTCCCCAG-CCATCAGCGGTGTACAGAGGTGACAGATCCCCAGGGCAGCCCCTGTGATGTTTACTGAATCACTGCCACTTTGCTCTGGGCAGCTTCTAAACTTGACAGAACAATAAAATGTCACCCGCATTTGCATTCAAAAGTTATCCCATGTTTACACATGCTAATAAAAAGGAAAGCTTGCCTCCTGAGGAAGGGGCACGCTTCTTAATCAATTTTCCAAGAGGCTTGAGTGTGAGACCTGTTCTGCATACATTGCACACACACCCACATGACACAGGGTGGCTCGGTAGCACTGTTCCCCT--------------------TCAGAGCAGATAGCCACTCTTTAGGGCTGCTGGCTCCAGCCGAACACTCACCTTCCTACAACTGCCTTATATTTTTTCTCATTATCTAGAGAAATATTCAATGAACCGGTAAATGAATTAGCTACATAAATGGCCAGAATGGTACCCTGTGACTTTTCTTCCTCCTTGATTAATATCTATCCCCCTCTTCCAGCTCTGAAGCCTTGTTCTTTTAAGTAGAATGAAGATTTGGGGGTCATTACATAGGGTCTGCATTTCCAGCTCTG-CACATCACTTCTGAGGTTACCATGAGCGGGCACTTAACGCCTGCAGTCCTCAATTCCCTTGTCCAGAAAACAGGCAAATCACAGTGTTGGTCTTAA----TAAGGATTCAAGCAGCACCAGTGAGAAATCCGGTGC-AAATTCTTTAAGAGAAACAAAAGGCATGTGTCTGCTGGCCCTCCTAACCTGAAAGGGATGCTGGCCTGTGTGAGCAGAGCAAGGCATGGGT-CTAGGGCCTC---TGC--CTGGAACAAACTAAAGGCCCCATAACCCAC----ACTTCTCTTTTGCCTCAGCTCATCTCTGCCAAGTGCCATGA-TTTGGGCTACAACTATCCTTTCTTCATTCATCAATG---TTCATCTCTGCCAGCTCCAGTCTCTCCTTCTTGTGTCAGGAAGCCGGAGGGCAGGGTGTTGTAGGGTGTTGTAGCCTTTGCTTTCCGATTTATCTCC-----AGTGTTTCAGGAGACTTCATGGTCTG------CGGATTTACCTATTTATCTTTGGATTCTATACATTATGATCTATACACTATGAACGGCTATGTTCATCTCTATA
s HiC_scaffold_1 140148690 1647 + 233722169 GAAGCAGAGGAAATCAGAAGGACCTAAAGGAGGAGCAGAGCTGAGGTTCATCACAGGAGCCCCGCCTGGGGATGC-CGTCTCC---CAAG---GTCACCAGCGGGC----------------TGCTGCTTTATCAGCGGTCTACCTGATAAAGGACTTCACTTAACTCCCCAACCCCTGCAAGATCCCCTTGTCTTTCCCAGTGCGAGGTGTAAGCCTCAGTGTTACTGGAAAATTTGATGTTCCTCTTTCCCTCTGAGTCCAGTCCTGGTTGCAGCCGGGGCCTTCACCTTGACCTTTGACCTCCCAGGTGAAGAAGTTAATAGGGTTCTTGCCTCCGGCTAATAGATGCC-------------ACT--------CTTATCAATTTTGTGAACCTCATTCTTTGGCATAAAGGTCATGATTGTGTTTTGCACCTGGAATCATACTGCAATGAGGCAAATCACATTCTCTTACAGtcaatgagggggaaaaaaagcacacAAAATGGAAATTACTCCTAAAACGACCTTGCTCGATTTCTGCATCTGGCTAAGAAAGCCTGTTTCTATACATCAAGAAACTGATCTGGCAGCTTGATCATACAGCCCGGCAGCCCAGTGCCATGTTAGCAAACACACTATCATGGAACATATGGCGTAAGTCCATTAATAGTGTGCACAGTTGATGAATTCCCAGTGTACCGCTGGTGATGTTTACTGATTCACTGCCACCCTGCCCCAGGCTGCTTTCAAACATGTCAGAAAAATATAATG--ACTCATATTTGCATTCAAAAGTTATTCCATATTtacacacactaataaaaacaaaagtttgcTCTTTAAGGAAGGGGAACACTCCATAATCAATTTTTTAAGAGACCCAAGGGGTTCGCATGTTCTGCATATATTGTACCTTGG--AATATGACAAAGGCTGGCTTTGTGG--CTTCTCACCTGTGCTAAGGTAGATAGTAACCTAGAGCAGACAGCCACCCTTGAGTACTGGTGGGTCTTGCAAATCATTCAGTTCCTAAAAGCTAGCTTCAGACTTCTCCTAGTACCTGAGGAAATAT------ATCGGGTTCTGGAGGTGG----------GGGCTGGAAGTTAGTCTTTGG---------------GATTA---------TCCCACATCCA--------------------------------------------CATTATTCAGGATAAGAAGTTCTAGTTCTGAAAAATCACCAGTAATGTCATAAGAA--AGTCACGTAACATCTCTGGACCTCAATTCTTTTATCCAGAAAATGGGTGAATGACAGCATCCGTCATGATTCTTTAGGTTTCAGG-------AGACAGAAatccactttaaaatattttaagtgaaacaCAAGGCATATGATTATTGGTCCACATAA-CTGGGAGGGATACTGGGCAATGCGACCAAATCAAAATGTGGGGACCAAGGACTCAAATGCTACTGTTA-AAACTAACGCCAGCAGAACTCACTCCAATCTTCCTCTCATCTCAGTTCATCCCTGCTTGATTTCACACTTTTTAAGAATAGCTGTACTTTCTGCACTTGGCAATGAATTTGGTCTCTTTTGACCTCACTATCATATTATT---------ACCCAAAGGtaatgctgtt-----------tattttttgcttttaaatccaGTCCCCATTTAACATTCCAAGGGACCCCTCAGACTGTCCCTCCTGAGTCACGGATCCATTTTACCATGAGAAGTACTATGACTGACTTAGCATGGA--GTTATGTCTACCCCTGTA

a score=40860
s chr3           153307668 1613 + 160039680 GAAGAGTGAGAAGCTCGGATTTTGACTGTGAATCTTTTCTTAGGCACACCAAAAACTCCACGAGGTTAGTAA-ACTGTCTGTCTTACTCACACGTCTATAGAGAGGCTGC------------ATGACCAGGCTGGGAGGAGTAGAGATAATTAGGATCAGGCTAGACTC-------AATGTCTGAACATCATTCAAATAACTGTGCTGCTGCAGATAAATATGCACATCCATTTT-CTGAAATACAGGAAAGATGCATAATGTTCAGGTGCCTAATAACTCGGCTGCTAGTtaatcactcccgacactcagatagcacttcaccttctaaaa-catttcagaatatgttgcctcattaatccctaccatgtccgtgcgagccaggcCCCGCCTCTGATCTCCCTATCTTCTGGAT--------------CTAAATACGTGATGGAGAAGAGAAAGGAAGTACAGA---ACTGCATAACCAAGCGAAGGCGTACCAACATCCAAGAACAGCAGTAAGTCAGAGGCGGTGAGCATGGAAGGGACAGCCCCTGACCTGGCGGAAGCTTGCCCTTGGC---GCAACCTTCAATA-ATAAGATCGGTATGATATAAATTATTCACTTCTGATTGGTTAAACTACAGTAAAGCAGCAATCCGGCAGCATCTTCAACACCAAAT----GCCTGGTCTCTACTCACTTGACCCTCCTGATGGTCATGTCCACTGATTAAGAAATGCTTTGTGTCATACATTTTAATGATATTTGTATACTTACAGAC-------------------CAACTCCTGTTTTCTA-----------------------------------------------------------------------------------------------------------CTCGAGGATAAATTTATAGTATGATATAAGTATGATGGTTCTACCCACATCTAATTACATATTTCTTTGTGTTTGT-CATTTGAAAACATGCCTATTCATCCAATGACATAAAAATTGG-----------ACTCCCATGCAGGGCACATGTCTGGCTGGTAAATACTCGTCTTTTCCCACACCAGCTCATGTGGCTCAGCTCATGT-------GGCTTGCTCA---------------GACTCGAG-AGCATAAAGAGGAAGCAGTACAGGCCAATAATTT---------TGAGGTcaagttctagaatgaggaagaccttggttcaaaatgattgac---actgctccttacct--------ggagagttgctcagcctctctcggt-gtgtttccatggggaggagaggctgtcaaacctacctcagtaaatt-caatgagataaaataataatcacacgcttagggcgatgtgaggcacacagcaaatgcttaGAAAGTAAATATTATTAGCTGTCTCCAGGCTTCCTTGATATTCTCACTTTCAATTCTGAGGCATGATATTGAAACTACCTTAAAATGATAACGCTTAAGATTCTAGAT--GATTACCTATGAAAGAGGAATATACTGTGGTCTGTGTTAACACAAAATGATCATTTCCCATCCAGAATGCAGCCAGAAATTCTCTAAACCACCCAAGGGGTCCGATGCTTGTAGTCAGCAGTTGGCAGAATGATAGGCAGTGTCAATCCT---GGGCAAGGGC-CGGGTTGGCTGCTTTGTCTAAGAAGATTTTACATAGAGATTTTTATTTTGCTTGTGC-ATGCTCACTCTTCTTGGGGTGTATTCTGC---------------------------TTCCTTTGGATGCCCTAGAAATCCGAGTACCGAAACAATCAGCTCAGCCACTCAGGAATACTGCTTGTTCAC
s HiC_scaffold_1 140151046 1824 + 233722169 GAAAAGCAGGAATATTTCATTGT-ACTGTGTGCCTTTTCTTTGATACACTGGAAACTCCCCAAGATTAGTAATAGTGTCTGTCTTACTCATAGTTGCATAAATATGCCACCTTAAGGCCCACATGACTGGTATGAAAAGAGCAGAGATAATTAGAATTGGGCTAGACTTTTATTTGAGTGTCTGAATATCATTCAAATAATAGTGCTGCTGAAAATGAATATGtacattcatttttctgaaattcagaaAAGATGCATAATATTCAGGTGCTTAATAACTTGGCATCTAGTTAATCA-TGTTGACACTTATATAACACTTCACTCTttagaatcattttaaaatatgttagttCATTAAGCCGTACAACATCCATGTGAGACAAGGAATGTTCCAGATA---CTATCTCTTAGATACTACAATGTTGTGTCAGATACTTGGTGAActagagaaggaggagaaagataaACTTTGCAGGGAAACTTATGCAGAC--------AAGAGTGACAGAGATT-----GGGGTGAG--------GGCCATCCTCTAACTTTGTAGAGATTTGACCTTGACAAAGGAATATTCAACATATGATGTTAGTATAGTA---ATTATCTACTTCTGATTggttaaaatgtaagaaaacagTACTAGACCTGCATCTTAAACATCACATTTCTGCCTGTACTCCAATCACTTAGCTCTATCAATGGTCATTCCCACTGATTAAGATATGCTTCTAgttataaatttt---tgtatttgtatatttacatTCTAAGCTCTGTTTCTCACCTCAACTCATGTTTTTTAGAAATAAGTactgccagggctggggatttagctcagcggcataagcgcctgccttgcaagcaggcggtcgtgagtttgatccccggtaccgataacaaggaaaaagactaaaaaaaaaaatcaaagaatta-acaactgctATGTTTTTAGCCATATTCAATTAtaaattactttgttttcttgtgtCTTGGAGCACTTCAAtgaatagaaaaagataaaaatcagtaCCAATCCAGATTACTACAGAGCATATGTGTCTGGGTAGTAAAGAATCACCTTC-CTAGTAtcagctcattctgttt-tctcaaGATACCAAAGACTTCTTTAAAAGGTAGTATATAGGACTATAGTAGCTAAgaatagtagtagtagtagctACTACAGTAGCTAAGAATAAGCTCAAATGCTCGGATCATGTAGACCTGAATTTAAACTGATTGAACTAATTACTAATTATATAACATTAGGCAAAATTGTGTAATTGCTCGAAATTGTGTTTTCACAGGA--------CCtcagaagctatttcaaagaactGTTGCAAGATTAAATAATCACTGCAGGCTTAGCGTGGTGCCAGCAGTATAGTGAGTGCTCAGAA-GTAAGCATTATTAACTGTCTCTGGGTTTCTTTGATATTCTCACATTCGATTTTAAGATATGATATTGAAGCTACCTAAAAACGATAAACCCAGGAATTCTAGACAGGCTTGCCTTTGAAACAGGAATATGTAGTGGTCTGTGTTAACACACAATGATCTTTATCCAGCCAGGCTGGAAATGGAAATGCTCTAAATCACCCAAAAGGTCAGATAGTACTTGTCAGCAGTTAGCAGACTAATATGCAATGTTGACCCTGGCGGGCAAAGTCAAGGAATAGATGATTTGTCTAGGTTGAGCCTACA---------TTTTTCTACTTGTACTCTGTTTCCTCTTCTTAGAATGTTTTCTTCATTGCATTTTACCTGGAGCAATTGGGGGTTTTTTAGAAGCCCTGGAAGTTCCAATAAGTACATGATCACTTTACCTACCCTTGAGTGCTATTATTTGAC

a score=64125
s chr3           153309437 4906 + 160039680 [encoded data, 5280 characters]
s HiC_scaffold_1 140153537 4532 + 233722169 [encoded data, 5280 characters]

a score=9167
s chr3           153315095 321 + 160039680 ATTATGCTGTAATAATATGGCTTT-TAAGGGTGGAATTTTTAGAAGTATTGCTGAGAAATTCTGGTCTCCAGCACCCAGATGTGAGAGTGTGAACTCTCCCCAAAAGGGAGGTCTTTCTAGGTGTGTCTTTCTCCCTCTGCCTCAATTACAGAG-AAAGGCT--GTTGTTATCGCTGGGTT---GTTTGTTGCTGATTCAATGGGGATTCTTATTGG-GCTGATTGAATAAGATGCCACTGCCAATACTTTTCAATCAAGATCCTCATACACAAACATCAGCAAATGCCAATGAACTGCTGAATATCCAAGGGAACTGCAGCAGGGAGA
s HiC_scaffold_1 140159389 315 + 233722169 attatgctgtga--atgtggcttTACAACATGGGagttctgagaagtatctatgaTA------GATCTGCTGTGCAAAAATGAGAGGCTATGAATTTGCCTTAAAGAAGAGCTTTTCAATGACAT-TATGTCTTCCACTGACTAACCCCTAGAACAAAGGCTCCATTGT-----CTGAGTTTGCATTTGCTGATAGTTCAATAGAAATTAGTATTTGTGATGAGCAAATGAGGTGTCACTATCAATACTTCTCAATCAAGATCTTCATATACAAATATTAGCGAACATCCatgaattattaaatatttgaagGAACTCTAGCATGAAAA

a score=14638
s chr3           153321190 462 + 160039680 ATTATCTCATCCGTGCCACCTAAGAATTCATTTTATCCTAGTACTTAACATTGAGAGGAAAATTTAATCCATCTGAAATCATTTATTCACATTCCCAATCTGAGTAGCCTATTGATTCGGATATTCATTTCATGATACTCAAGAGGCTTT-GATGTGCAGCTCTCTCCACTTTAGAGTGTCCTCGAATCACACACGATTGTGCTGTCATTCAAATGGCAAAAAAAAAGGCAGTCACACCACA-AGCAAAACCTTCCTGCTTGGTTTAGTAAAATGTGGCAAACACTGGCTGCTTGCTGACTTTTTGTGCCCAGCCCTGTGCAGAAGCTGGAACTAAACAAAATTCCACCGT----CCTTACTTGGGGAAT-------AAACAGCCAAACTTCCCGGGAAGACCAGAAGTTGGAGGGGCAACT--GCCACCATAAGTCGGGGCAGCAGCAGGAGTCGGCTTCAAGGGAAGGCCCGAGG
s HiC_scaffold_1 140164670 467 + 233722169 ATTACTTCAAATATATCATCTAATAATTCATCTTGTCCCACCACTTAGTGTAGAGAGGAAGAAT-----CATACGAGATCATTTATTCATATCCCTAAAATGAATAGTATATTGATTTTGATACTCATTTCACAACAGTCAAGAGGCCTTAGATGTGGAGCCCTTTCTACTTTTAAGTGTCCTCCAATCACTCAGGATTGTACTGCCTCTTGAATGGCAAAGAGACA--CAGTGACACTGCAGGGCAATGCCTTTCTGCTCGGTTTGGTTGAGGGCAGCAAACAATGGATACCTG--GGTATTAGGTGCCAAGCACAGTGCCTGAgctggagagaaa-aaaaggaaactgtgTGCCCTTAGTTGGAGAATCTTGGAGAAAGAAGCATACACATCAAGCTGTCTGGTACAGGGAGGAGTAGTTTAGCAGGCTGGGGATGGAACCACAGCAGGATGCAGTTGGAAGGACAGGTCTGTGG

a score=21878
s chr3           153322776 1937 + 160039680 tgtgtgtgtgtctgtgtgtgcatgtgtgtctgtgtgtgtgtCAAGCCTCATCCCCCACCCCACCCAGTCTCCTTCTCCTTGGTCTCTCAGCTCGCTCAGTGCTCATATCATCCCACACATCCGGAGAGTGTGC-TGCAGTCTCTGGCCATGGGCATCTAGACTGCAGAGTCTGCATCTTCCCTGTGTTCTCCTTCCGGGCATACC-CACACCACCTGGCACAGATGCCTGAAGATCTTTTCATTTTGAGCGCAGTCTGAACTATACAGTATTTTACACACACTATTTTTGGTTCATAACCATGCTTCAAACATGTACAGAAACCAAGTTCAGTACCAACATCCATTCTACGTT-CCTGTCCAGAGCATCGGTGTGCT-----------------CTTCGTATTCACATGGAGATGTCTGACTCCAGTGTGGAAAAGCCATTCCTCACCAGCCTTCGAAATCAGTATCAGCAGCAGGCAGCTAAG-GGAATCTTCTGCAACTTAATTATGCTCTGCACAGTTTGGCCTAGCTCTCAATATGCATCCTTTCTAAATGTCCAGATTCCTGTTTGAAGGACCAAGGAGGACAGGATGATGCTACAAAATGTTCCCAGATTAATCACAAAACCTGGAAACATGGTCCCTTCCATGGCTAAAAATGTGTCTACACTGATAACTAAATTAAGGG-GTTTAGGCTCGGAGAGTAGACTGAGTCATTCAGAACGGGGGTCTG-TACAGAG-AGGAAGGGAAAAGGAAAAGCCAAAAAGGAGCCAGGAAGACAGAAGCAGAGATCAATGAAGTGGCGCGTGAGCAGAGAAGGCAGGAAAAC-------------CTCTTCTTCCTGTGAAAGGGAAAGAGACAGATGCCCTCAGCATGC--CCAGGAAGTGCCCAGCACTGCCAACCCATCGTGGGCATCTTCCTT----------AGAGGATAAATCCCTTCCACGCTGAAGCACT--GTTGGTCATCACAT---AGAGCAGCAAGGAG-AAACCTGACACTTCCCCAAGTCAAATGCTATGGTCAGTCCGGA---CACCAAG-------GGGCCCTTTGATAG-GATCTAATGCCCCG-GAAGTGTCCTTATATCCTAAA-TGTTAAAATCACCATAGTTCTTATATTTT----------CTAAGCAAATACTGGAATAT--AGCCAAACAACTAGAATACTAGGCATCTCTGCCTATCTCTCTATTTTGAATATATAttttactttgctttatgtgtgtctgtgtgactctatgccacctctgtgggtgtctataaggacattgggggtgttgggtgatctgggagctacaggcaatagtgaactgcttagtgtgcatgctgacaaacttgggtcctctggaagggcaggaagcactcttaaccgctgtgccaactctccagccccATCTCTGTCTGCTTCTGATGCAAGGTCGGTCCATGCCG-GTTTCTGCATTCCTGCAAACAGGCTCTAAGTGCAAACCAGACAGGAGCGTTGCTGACTGCAAGCCTGCTCTTTATCCCTGGCATCCCTGTCCGTTGGCTGTTCTCCTGTTTTCTTTGCATCAGGGAATAAATGGCACTTTCTCAGA-CATTCCATTTCAAATCTATTCACTTCATATCAAAAATTAAA--------CTGTTGGGGTTTTTCCCCCGGTGAAAACAATTCCATTCTTGCTTCTCAGCTGAGTTTAAAGATGGAAAGCTGTTCAACCCTTAGACTCTTACATTAGAAGCAACCTAGACCTAGAAAATGTTGGCCTAGTTAAGGTATCCATTCTAAATATATATTGTCCTCACTACATTGACGGTCCAAGCTCACCATCTGGTTATCCTGGCAATTTACATAGATTTTTCATGTGACAGAAAATACTTTCTTATTGGCTCTTACATGAGGA--ATGCCCAGCATTTGAGACCTCTGTTGAAAACGTT---------CCTAACAGCACAGCAACAATGCCTCTGAAGTTGTAAGG----AAGAGTGGGGATGAAAGGAAATGGTGACA
s HiC_scaffold_1 140166132 1744 + 233722169 tgtctgtgtctctctggctGTATGCTT-TCTGCTTTCACTTT----CTCGGGCCCTCCATCCTCCAGGGTCCCTCTCTCTGGTCCCATTGC---------AATCCTATCAT-------ATTGTGATATTGTATGTGCTATCTCTGGTTGTGGGCTTGCAGATTGCAGAGTCTGCATCTCATTTGCATT-TCCTTCCTGGCATCCAGCACACCCCATGGTACAAAGGCCC-AAGATATTTTTGGTGACAGTAGAAATCAAAGGCCACAAGATTTTACATATACTGTTTTTAGCTCATAACCATgctttaaa-atgcaaagaaatgaaattcagtGTGAACAGCCAGTCTAAATTTCCTGTCCAGACTCTTAGTATGCTGTGAATTCAATCATGTCCTTTCTATTAATGTTGTAGTCTCTAAC------ATGGAAAACCCATGC-TATCCAAATCTCTGACTTAGCAGTATCAGATAACTGTTGAGCAGAGCCCCCTTTGTTTTAATTGTGCCCTGCAGATTCTGGTTCAA---TCCAAATGCACCCTCTCCA--CCTTCAAAGTGACACTGAAATGACTGAAGA------------------------TCCTTTCTTTCCCCCAAGAGGTGAATTCA--GCACCTTACACTACAAAAAAGGCCCTTTCAGTTGTAACTCAGTTAAGGATGTTGACTTGCCAAAAGTACACAGCGTTGTTTAGGCCTAAAGACTAAGACAGAGCAAGAAGGGCAAGAGAAGATGTGAAGCTGGGCTCTAAGGCCAAAG-----------TGAAATGGTGAAGATCCAGGGACTGCAGACAGCCTCACCCTGGCTCACACTGCGTGCTG-GtaaggaaaggaaacagaatcTCTCACAGAGCTTCCAGAAGG--------AATGCCAACCCATTTTAGACTTCTAACGTCAGAGCtgcaagaaaataa-tttgtgGTGTGTTAAATCATTAAGTTTGtaataatttgttacagcagtagGAAGTGAACATG----TTCTCCAAGTTA----CCATCTTCGGGACAAATTACTTCCAGTTTACTTGTTCCCTTTGATGTCGCTCTAGTACCTCAAGAACTGCTCTTACATTTTAAAGTGTCAGAATTAATGT-GTCTTCCTATTTCATGATTCCAACCAAGAAATTGCTGTACTATCAACCAAAACAACTCTTATATTATAAAT--------GTCTATTTATTCTTAACGTGAACTTCAATTTGATTCAAG--------------------CCACTTCTTCGAATTCCT-----GCCATT-------------------------------ATTCTTGAAATGC------------------AAATTGGATAAT-----------AAATGCACTC---ACTGCTTGAC--ACCCTTCAGTTCATT--------------------------GtccattttgtgtttttgtattcAT-----------------------------------TTGC----------------CTATGTCTTTG------------------TTTTAGTCTGAACTGTTGGAACTGAGTAGTAAATGACAGCTCATCAGGTCATTGTAATTCAAATCTTTTTATACTATAACAGATCCTGAAGCACAACTCTGTTGG-----TTTTTCCAGAATAAATAATTCCACTCCCATTTGTTGACTGAACTTAAAGATGACAAGTTCTTTAACTGTTAGACTGTCATATCGGAAGCAACCTAGACCTACAGAATTATGTCCTATTTAATGTATGTCATCTAAATGTGTACTGTCCTTAGTAAATTGACACTCTAAGTTCACCAGCT--TTATCTTGGCAATTTACATGCATTT---ATGTGACAAAAGA-ATTTTCTTATTGGTTCTTAAGTAAGAAATATGCCCATTGTTTCAAA-ATCAGCTGAAAATTTTCAACTTTTCCATAACATAAAAGAGACAGTATCTATAAAATTTTAGAGCCTAAAATAAGAAGATGCAAGT-AATGGAGACA

a score=12736
s chr3           153325883 578 + 160039680 GAAATAATGGA----AGTGGCATTTCCTTGATTCCATTAGGTCCTTCCTGAAGGAGCCTGTCGGAGCCTGGCTGTAAGTCATTTTTCTTTATTTCCCTAGAAACACTCACCTTAAATATTTATTTCTGTTCCCTTCCAGTCATGCTCCCAGGCTCAC-TCCAGTGTGCCAACATTCATATCTA-----CTTCTGCTGACTTCTAGTAATTTCTCCGTGCTCTTTCCTACAGGGAGAGGT-GACAGCCAATAGCTCTTATGACATGATCTGATTACTGTCATCTGATCCAAGCCTCCTTAGACAGACTGCCTACAGCCTCGTCTTCTTACT----AAGATGCCTCCCTGAGACGTCTCTCAtttatttactttgagacagagtccctctaggtaaccctggctggcctggaattcacagaggtcggcctgccttgcctcccgatgctaaggctaaaggtaaatattaccCCCATCTTTCTAGTAAGGTGCTGGCATTTTCTTAAGCTATGCATGCCCTGTTGGAAGGGAAGTATACTTACATACCCGAGATCTGTTTGCCAGGACACAGTCAGACTCAATAGTTGCTCAATATT
s HiC_scaffold_1 140169550 473 + 233722169 gaAATAACAAAGAGCAGAGGCATTTGCTTGCTACTGCTCATTTCTTCCTG-----------CCGGCCCCGACTGCatgccattttt----atttccctgGAAATGTTCGccctaaatatttatttctgttccCTCTCATTCATGCTCCAAATCTCCCCTCTACTAGGTCAACATTCATATCTATTTTTCTTCGACCGATTTTCAATGATTTCTACATGGTCTGCTCTATATGCATAGGTTGACTGCCAGTAG--------ACGTGATCTGACTGCTGTCATCTGATTCAAACCTCTTTAAACAAATTGTCTGCAGCCCC--CTTTTCACTGCCAAGGACACCTGCCT-----------------------------------------------------CTGGCCTGTAACTCCCA---------TTATTGTTCTTTT----------------GGAACAAAACACGGCAGTCTTTC-----------------TTCCTTGGGCCATAAATGTGCCTTGGGAAGGAAAGCATAGGACTATATTCTAGATATATTCCCCAAAATAAAGCCCAACAGAATAATTACTCAATATT

a score=6908
s chr3           153327955  893 + 160039680 CTAAACTTATGGAAGTTCTTGCCTCTTCCAAAATAAAA-TCCTCAAAT----CACACTGAGCCTTGCCCATCTGGACCTCA--CAAAGGCCTACGTGTGTCTATTTATAAAGTGAAAAATGGCCGCTTCCTGTGCATCAATAGCAGATGTAGGATAAGCTCCATTTTGATTAACTGTCTAAATATGGTTTGACACATATGCCTGTGTTTTCCAGTACTGGCCCTGGTTGCCCTTTTCTTGACTAAGTATCCTATTCAACACATCATTTCT------AAGCATT----CTTATCCTTG------AGAGTGTTTGGACACACTA---GGCACAGCACTCTTCCAATTCGGGTTCTG-------------------------ATGTGA---------------CTTTG----TGCTGAG--------------------------------------TTCCCTATGTTGACACTGTTCTA-----GGAGAG---------------GTGGGC---------------------------------------TCTGCA---------TCTCCATCATCATCATA------GTATTG---------------------------------------------------------------------------------------------------------------GGTCTTTCCATTCTAAGATGGCAGACTTAGAAGACTCAGA--------TGGCATGATGTCCCTCTATAGAATCACCGGAATGAATGTTCCCCAAGTGTCCATG---TGCACCACACTACACGTGTATATGGATGGCATTTAAATCACTGTGTACTTTTGAATGCCGTGGACTGCATGTATACGCATAATGTATACGTGACAGACATGTGTATACATGTATACACATGTCTTTCCCATCAATTCT---GGCTATACTGGTTATCCATTC---TCTTCCCTCTGTTGTTTGCTCAGTACTACAGTGAGCTGTACAGCCATCCTTCTTTGTCCATAGTATGTCAACCTGGAGTCTCAGAGTGCAACCTTATACAGAATAAAGACCTTTACACAGGTAATGAAGGTAGGGACCTTCCAAGGATATCGTTATGGATGAATGTTAGCACCCAGTCCAGTGACACGTTCTT-----AGACGAAGGAACAGTCTC--CAGGATGCCCAGGAAAGG
s HiC_scaffold_1 140170980 1152 + 233722169 CTAAACTGATCAATGTCCTTGCccctttagaaataaaaattctcaagTGAGACTGACTGAGTCTTGCCAATCTGAACTCCAGTCTACATTTTACTTGGCCctatttatgaag--aaaaatgattatTTGTGGTGC--TAATAATTGATGTGGGACACACTCTGTGTTGATTACATGTCTAAATGTCATCTGACAGATTgtcttatgtttttaaataatagattTGGATGTTTATTTGTTGCCTAAGTATTTTAATTAACATGCTACTTACTACCAAAAGTATTAACACGTCTACTAGGTACCTAAAACATTTGACCACATTATCCAATAAAGCaccattt---tttgtgttttgtttgtttttgtctagtAGAAGTATAATGTgaagatttttgtcttttctttgggTCTGCTGAGCTACAGTATGAGAGAGATGGACTAGAAGCctcttctctttctgtccttGAACAATGCTTTACCTAAAGAAAGCTAGAAAAAATGACAGTGGGCATAATCCTACTTAAAAGTTTCCACACATCAGAATACCTTTCTGCagtctaaaattttttaaaataatcaaacacCAAGTATTGATACTAATAAGGAGTACTGCTTAACAGTGTAGAAAATAATGCAATTCTAACAATATTAAAACTTCACTTTTAATGTGATCTATTATTTTGCCGGGTCACAATTTGTATTAAGCTCTTTTACATCTAAGACATCATATGAAGAACACTCAGAATAACATGTTGCATAAACACTTCTTGCATAAACACT----TACGTGTTCTTTCAGCATCCGTGGGGTGTCCTGTATTATGAGAGTAATTGACCTTCATTTGAA---CTGTGTACATTTGAATGCAG------------------GTTATTTGCATGGAAAATGAAAGTGTA---------------ATTCTTCACATTAAGTATTGAGGCTTGGTGgaccattcattcatttgtttcctcagatgttctttcgGTTCTGCAGTGGGTTGGATTGTAGT--TTCTT--------GCAAATATACTAGGAA-ATCAGAATGTGACCTTATGTGGAATAAAGATCTCTGAAGAAGTAATTAAGGTAAGGATCTTGAGATGACATAGTTTTAGATTAGGGTGAATCCTAAATCCAATGAAAAGTTCCTTTAAGAGCAAAAGAAGCAGACATAGAGAGACACACAGGAAAGG

a score=33353
s chr3           153334213 1229 + 160039680 CCTCTTTGTATCCCTTGTTTCACCAACTTCTAGGCCTCTTTCTTCTTGGTTTGTGGATTGGCAGGCTGGGAAGGCTCCTCAAGACTAACAG------------------------CTCCCCACACA-----------GGCTGCCCACAGTTATGCGCCACTCCTGGCCAAGAATGCAGAACCCCTTTATTTGAATTC-----------------ACTTATCTCCAACTATTCCAGAGATGAC----------TCCTCTGAGAATCCCAAATAAGGCTTATTAACAATCATGGACAGGTCTCCCAAAGAAGGCAGACCATCTGGCCCCTTTGGCAATGATCCAAATTGTACACTTTAAAAATGAATCACCACCCAAATAAATGAGAAATAAAGTAAAGACTACTGAACTTGCCAGTTCCTTTATGCATATGAAGAAGTGTTAGCCTACAGACTGGCTCACTCTGTCACAAGGAAGGCTCCCACCTGAG-CCACA--AATGAGCCAGCCTTGGAGGGCAGCGACTTCTGGGTACAGACATATGGAAGGGTCATTTGTTTCTCATTTGCTCGACAGATAAGAATATGGAAACAGTCTCGGCCCATTTGTTTGATGGGCCTCCTAAGCCAGTGGTAAACAAAGCAATACAATTAG-TTTGGCTAGTCATCATTAAGAAA--GTCACTGCTGGGACCCAACTTAATGACACCTCTCCCTCCACAGGAATGG---CTTCTCCA--TTGGTGGTCTGAAAAGTGGTAATGGGT-GGGTGGGAGGGAGGCA---CCCAGACCGTGTCTATAGA--CTCAGAAAGCCCAGTGCATATGGGAGTCACAGCATAAGCTTGTGCTAGATGCCCTTCCTGCCCTGCCACAAAGCCTTTGGAAGCTC-TTTAAGTAAACCTGCATTCTATAGAGAGCTCGGAAATATAATAATCCTAGCAAACCAAAACAATCATTAAAGATTAAAATG---TCTAATCCTGTATTAAAACATAACCAGAAGGTTCTACAATGCCTGGAGAAGGCTCAGGTGATACACCAAACCACCCTGGGAC---------------ACCGCCTTCGCCCTCTGCCTTCCAGTCAAACCTCTGACACATCATTACTAACAACCAATT----CTCTGTGAATAAAGGCAATCCAAAGAAGCCATGACCTGTTGAACTCCCAGAAGACCTGCTCTGACAGTCAACTGGGAGAATCCTTCATTTTGTTTCTCAGTACTTAGGTCTCCAATAACCCTTATCTGCATGTTATGTGGGTTATTTTATATGAGTGGAGGGACCATTCA---CACCTTTCCACTTGCTACTCTT
s HiC_scaffold_1 140178473 1249 + 233722169 CCTCTTCAGATGCCT-----------CTTCTAGTTCTTTCTCCTCTCAGTTTGGGGAGCAACAACCTGGGTAGACCCCT-AAGACCAACAGAGTCCAGCAAGCACAGGTTCTTTTCTTCCTGCACTCCCTGGAAGTTGTCTGCCCATCAC-ATGCCTCCCTCTTAGACAGGATAGGAGAGATCCCTTCTTTGAATTCCTTTGGTTTCCATGATGACTCATTTCCCTCACACCCAAAGATTATGGCTCCCCCTTCCTCACAGAATCCAAAATTAGGGTTATTAATACTCATGACCAGATCTCCTGAAGAAAGCAGGCCATCTGGCACCTTTGGCAAGGAATCAAATTGGGCATGTTAAACCCCTACC----CCCAATTAAGTGAGAAATACAAGCACAAATACCAAAATTCTCAGTTTCTTCACCCATCAGAAGAAG----------CAGAATGGCTC---CAGCCTTGGAGAAAAGTCCCATCTGAGGCCACATGGAGCAGTCATCCCTAGAGGGCAGCAACTTCCGA-TGCAGACATATGGAGAGGTCATTTGTTTCTCATTTACCCAACAGATAAGAATATGGAAATAGTCTCAGTCCATTTGTTTGATGGGCCTCCTAAGCCAGTGATAAACAAATCAATACAATTAGTTTTGGCTCATCATCATTAAGAAACCTCCACTGCTGGGACACAATTTAATAATACCTCTGGCTCCACAGGAAAGGAAACCTTTCAAGGCTGGTGGCTTCTCTAGGGTTACAGCATCACGGGAGAGGCAAGCAGCTCCCACATAGTGTCCACAGGACTCCTGGGGGTGCTGTGCATCTTAAGGTC-CAGTAAGAG-TGGTGCAGGATG--------GTCCTAT----ATGCTCCTGAGAATTCATTTGAGCAAATCTGCATTCTGTGTGGATTTTGGAAATACTACAATGTGAACAGATTGcaacaatgagtaaaaattaaaatgacatctAAACCAGCACTAAAATCTAAACAGAAG---CCAGAGTG-CTGGAGTGAATTCAAGTACTTCTCCCACACTCTCTGTGATCGTGAGAGCTACAGAACAGCTTtccgcctcagccttccagctgAATCTCCAGCATATTCTGACCAACAAGCAGTTAATATTGTGTAAACGAGG-----CCTGCGAA--CTTCACTTTGTG----CTTACAAGGCTCTCTTTG--GGCCA--TGG--------------TTGCTGCTCAGtac---aattttaaataacatcTGTCCACTTCTTGGATGGGTTGTTTTATAGGC----AGAGAATCTTTATGGCATCTTCCCACTTGCTCCTCTT

a score=100778
s chr3           153338877 8380 + 160039680 [encoded data, 9212 characters]
s HiC_scaffold_1 140180837 8071 + 233722169 [encoded data, 9212 characters]

a score=82309
s chr3           153354690 5160 + 160039680 [encoded data, 5576 characters]
s HiC_scaffold_1 140195483 4949 + 233722169 [encoded data, 5576 characters]

a score=43946
s chr3           153360548 3244 + 160039680 accttgcctttaaaagaATCATCTGAAGCATTGATAAGCTCAACTGTTATGTCAAATGCACCTTCTGGCAAAGTCCACAGCAAGA-ACAGAGGCTTCGAGGACCc-agtgggtg---gaatccttgagagttagatggtgccagactcagatctcagctctaaaaattacc-tttgtgcatct-tgggtaagttactaattctcccttggcacgtgacctttctgcctacacaacacaagtcagagccattccatagg----ctgtgagtattaaat-----gatacc-taaaggttttattgtgaccctgtctcatgacatacagtgcctggcacacagaaggccgtgaataTGGGGCCACTA-ACT-------CTGCTCCTGCTGTTGCCGGGAGTGGGAATTATTAGCTCATGGTCATTctccctttcttcttcctccctccccccttccccccctcTATGG---CTGTAAAGCAGGAACCTGCAATCAATTTGTCAGAAAGG-ATTGACTTCTCTTGCCCTACATCAAGTCTCTTCTACTCCAGAATATTTAC--CCCGGCCTGTCCTGAAGCCCACTGAACCAGGTAATTAACAAGGAAGGTTCTGGCCTAGTCATGGGTCATGATCAACACCACTCACAGTGGCAAATGGCTATTGAGCTTT-CACGTATCAATAGCTCAA--------AGATTTGGAGGATCCAGGGGTTACGGTTCTCAATACCTTTCCACATTGATTAACAGG--TGCTTCCTGGAAACATATAA-ACA-TAAATATGCCTCTTGAAATTGTTTCAACTCTGTATGGCAGAAAATGAGCTAA--TCTATACCAGGAGTGTTGAGAGGTCCCAGAGGGAGAAGTTCGAGCATGCTCAGTGAGA-----TCTCATTAGTGAAACAGATGACCTGGGAAGATGCAGGCAGGAGAAATGAAATCGCCCAGACCA-----------TGTTCCAAGCCTGGGTACAGCAGGAGGCAGCGGGACGAGAATAGGA---ATTA------TGTGATCGCTGGGACAGG----CAGAGACGGTTGCATGGACAGGATGTCCAAAAGGGACTGTAGCTTTCAGTGGAGGACACATTCTCCTATCTCCTGCC-----AGTGTGCTGATAGGGTTTTGACAG---TCCCCATGAA-AGCCCACAGCAAAGACCAATTCTTCTGCACAGAAGTCCTTGGAGGTAGGGAGAGGGAGAGGTCTGGACCACAGAGCAGCATTCCTTGTAAGGAGCTTCATGGCATCGCAAGGGATTGG-TCTCTTCCTCACACAGGCTGGCTTGGTCCCCTAAGTGCCTGCTGT-------TTTTTATAAAGCAAGG-------TTGTGGGCAgggctgga-----gagatggcttggttggtaaagtgtgt----accctgcaagggtgatgatgtgacttcttttctctcctcagctgggactggtcacatgcactgggaagggagacattcccaaggctcctgctgctgggcagcctacttcaccagcactaggctatcaagagaccttgcttcaaaaactaaggtgaatggcttctgaggaacaatactggaagttgacctctgtcctctacacaTCTGTACTCATATGTATAGACACAACTTCACACATCTGCAACATCACCTAAacacacacacacacacacacacacaaacaTGAATGCATGTGCGCAGACCC------AACCTCAAACAATGAAATGG---------AAGCAAGGTTTCC-CGTGTGCCCTGCCACGTCTCTAGGTACCCACGTGACCTTCAG--TCCTGGCA-GAGCCGAAGCCA-GTGAGAGCCTCACCCCA--CTGAGTCCATGCTGATCCCCTGCTCT-------CAGAACTGCGCTCCAATCGAAGCCTGTTTGCTCTGT-AAGTGCCTGGCCTCGCACGGCCTGGGACAACAACAGCAAGGGAACTAAGC--TGAATccatcaaccgaacccaaccacaaaccagacagaagacatccctgggctgcagttcaaatag-tcggcctatcagggatagaggatg-----gtacaaaggcccagagagggcctggggagtggtggtgggtaaatggaaaaccttcaTCCTGCCCACAGACCTAGGCACAGTGAATTCTAGCCTAGGGATGAGAAAGTATCCAGGTCAAGACATACTTTTGAG----------------TTCACTTGTGCAGGCC-AGTGTCCGGCACCAGTCTAGCTCAGAGAGAGCT-------GAGGCCTGGCCCAGGAGGGGCGGCTCTGCTTCTCATTCACTTCAGTATGAGATTTCTTAGGCAGAACATTTTCAATTTGCTGCTCAGCCGATCAAACGCTTGTCTTCTCAGAATCGTGGAGAAACAGGAAAAGAGACCAAGTGACAAAAGTTTAGCATGGGAAGTCAAAGCTGTCGTGTCTCCAATGGGTTGTGCAAGGCTGCCAGGCGCATGGTTGCATCCCCGGCAAAGGTTGCCTTCTGCACTGCAGGCTGCTGCTCAAAACCTTCCTGAATTCCATTGGCTGGTAAAAATGGAGGCCCCACAGTTTACCTAACACAACAGGGCTAAGCTGTGTGCTAACATTTCAAGGGACAAATTCAAAGAAGATGACAAAATGACATTATTCTGCAAAATCCA--ATTAAACTCC---CATTAAAATATTTAGAAATCTGT---TTTCCTTCATATTAATTTCTCTGACGtatttatattttaaaataaatGCACTGGATTAAACTTTATAAATAGTGGTGGTGATTTCTACAAAAGCTTTGACTTTAAGCAGGGCAAGGAATGTTTGAACACAAGTCACAGTCTGGGATGTCACTTAAACAGTATGTGTCCAAAAGGTAATATATTTTGCATAGCTATCTAGCACACACAGAGATACGGACTAGGTCCTGTGCTGCATGCTAAGCGTGCCTTCCACTCATGAGCTGCACCC-CAGCTTCTCCATGTGAAATGTTAGCTTAGGGTGCACAGTATTCAGACATTCT-CAGTGCATCGTCTTGAGTGAGCATTCCAGTGGGTTCTGAGGCTGGGAGGTGGCTCAGCT--GACTACACCCTAATGGAA-----GGAATTCAATCATTG--AGTCACATGTGA-------TTACTTAATTCTCCATCTGAAACAA---TGCTGTATCTTTCTAT---GTGCTCACTGACAAAATGAATCCTCTTCTGCCTTTCTTTTTAAGGGAAAAAAAGTTATTCCGATTGCTGTACACTAATTGAGTTTCAAGGCCCACTAATGTGTAAGTTCTGATAGCTTCAAAAGGCCTGCTTCTGCTTCGCTCACACGTGATAGCCAACTGCGGGGAGTAA----GTTCAGGGTAGTTT---AAGGGACAGTGGGAACTGGATGACATAGCAGAATAAGCAATGTGGTCATTTCTC
s HiC_scaffold_1 140200651 2978 + 233722169 acactgatttaaaaaaagatgtctgAAACTTTTATAA--TCAAATGTTGTGCTAAATGTAACTTTTGGCAAAGTCAATGCCAAAACAAAGAGGCTTTGGGAGCTGGAAATGGTGTAAGAACCCTTCTGAATTAGGTGATGTTGGGTTCAAATCTTAGCTCTGAAAATCACCAGTTGTGCATTGGTAATTAAATTACTTACCCTACTT-----CATG-CCTAGCT-TCTATAAAACAGAGTTAAGAAGGACTCCACAGAGTCATTGtgattattaaataaattgataCTGTAAAGATTTTCATGTTA---TGCCT-ATGGAATGCAATGCCTGACTTACACTGTGTAATGAACACATGGACTCCATACTAAAGTAACTGCCTTTGC-ATAACCAGAGGTTTAAGTTCTTACCTTATCGTTTT--------------------------ACATCACAACTAAAATGGGAGTCATAGAGTGGAGGCTGGCAACCAATGTGTTAGTAAGGTGCTTAATTCTCTTGCTTTCCTGCAAGGGTCTTCCTC-CTGGGACATTTAAGACCAGCTCATTTACAAAGCCCACTGAAGCGGGTAATTAACAGTGAAGACTCTGACCTCTTCATGGGTCATGATTAACATCACCCACAGTGGCTAACAGTTACTGAGCTTTTCAAATATCAACTGGTAGAGATAAAACATATTGCGAGAAACCAGAGGTTGTGgttttaaatacttttctatATTGATTAATAATCCTGCTTCCTGGAAACATACAGGACAGTAAATAAGTCTTTCAAAACTGTTTCAACTATGTAGAGCAAAAAATGAGCTGAGGCTTACATCCAGAGTGCTCAAAGGTGCTAGAGGGAAAAGTTTAAA-GTGGTCACAGGGAGGTGTTCTGCCTTGCTAAAGTGGGGATTCAGAAAATTGTGGGCAAGGGTAGCAAAACTGTGAGGGACAGTGTGTTATGTTACCCCAAGTCTGTTAACAG-----Ggcagaagga-gaggaaagggtgcattactttcttctcattACTAAGAAAAAACACCGAAaactagggaaggaaaagtttattt-----ggttcatagttt---gtggaggtttcagtctataatggactggctccaaagcaaggtggcatggaAGAGACAGCAGTTCCCAGgagcaggagacagcaaaagcaa------caagacaaaa--------aaggggggagggtgcaagctttttttc------ctccctacattgtaag------caggctaccacacTGGgtggggtgtagcactcacaccatctctctG----CCCTTGGCTTCTGCAGGATGAGGatttttacaaagtgaggaccctggccctgtGCTGAGTTagacttctaaactgctcaagttaacacaatgtattAACAATCACAAAGGAAGA-----------------------------GGATTAGTCC--TGGAATATAAAGACAAACA--------ACTGCTGCTTTTGG-TAGTCGGATTAAGTA----TGAGCCACCCTGGGAA-GTGCTGGGAAA-----GGTGGTTAGGTCATGGAG--------TAGAGG---------------------------CCCACATG------AACAAATTCATGC---TGC-----------------------------------CTACCAGAAATGGGTGGGTTCTCACTCTTGTGGATCAGTTACCAAGGCAACAGGTTATTATAAAGCAAGATCACCTCTCATGTTTTGCCTCTTCCTCAAGCTTCTTCTCTCCCTTCAGCTTTCTGCCATGAATTGAAGCCACACAAGACCTTCTTCAGAAGCCCAGTGGATGCTGGTGCCATGCTTTGGACTTGTGGAACTGTGTGCCAATTAAG--CTCTTGGTTTAATGAATTACCTGGTCTAATGTATTCTATTACAGCAACAGAAGATGGACTAAGTCATGCTTCCTCTGGCTAATGCCAAGGGAAAGCCAGGCAGAAGAGAGCCCAGGGCAGCCATCCACGAAGATCAGTCTCTCAGGCA-----GATGCCTACATGGAGAGGCTCACAGTGGACCGGAGA---------GGCCAAATGGGGAA-----------------------------------TCCAAACTCGCAGTGGGAAAGC-TCTAGACCAA-ATATCTTTTGGAGCACAGATTGAATCTCATTCATTTGTATAACCCCAGTGTCCAGCCCTTGCCTAGTTCAGAGTAAGCATTAAACAAATACCTAGTTCAAGAAAGGCAACATTGTTTGGTATTCACTTCAGCATTAGATTTTTCAAGAAGAGCATTTTCAATTTGCTGCTCAACCGATCAAAAGCTTGTCTTTGCAGAGTCatagagaaatatgaaaatagacaAAGTGACAAAAGTTTGGCATGTGAAGTCAAAACTGTCTTATCTCCAATGAGCTGTGCAAGCCGGCTCCGCACATGAGTGCGTTTCCCAGCAAAGTTGGCTCCTCTGCAGCAAGTTAAAGTTTAAATCCTCTATTAATGCCATTGGCTGATATAAATGGAGCCCCCACAATTTACCTAAAGCTGTAAGGCT----TTTAGGTTAACATTTGAAGGAGCAAATTCACAGAagaatatgaaatgaaataattctaTGAATTTCAGTGTTAAGCTCCCAGCATTAAAATCTTTAGGACTTTCTGTGTTTCCTTCCTATTAACTTTTCTGCAGCATTCATATTTTAAcac-----------------cttttaaaataat---------------------------------------------tggaTGAAGAC-----------------------TAAAC-------------------------------TAGTTA----------------------------------------------------------------AACTGCTCTTGCAGCCCCTCCATGTAAATTGCATCATTAGTGTGCACAGAAGCCAAACACCTTGGAAAACACTACTGTAGATGAGTATCCCAGTGTGACAT------------TTGCCCTGCTTGAAATATTCCATAATGTAATGCATGGTACTTAATCAGTACTATTGATATATTGGCATCCTCTATTTAATCATCCATCTGAAACAAAGGTTATGCACTCCTCTGTCCCATGCATGCTGGTGTGTTGCATTCTGGTCTa---ttatctttaaagaaa--------atgCTGAGTGCCACTCACTAAATTAATTTTCAGTCTGACTAATGGATAGGGTTCTATGGTTTTAAAAGGCTTGATTTGGCTTAGCTCATATGCAAATGCCAACTGCAGACAACAAGAATGTACAGGGTAGTCTAAAAAGAAACAATGGAGGATGAAAGAACTAATGAGGAAATCAGTGCAGTCATTTATC

a score=56262
s chr3           153365107 3850 + 160039680 [encoded data, 4283 characters]
s HiC_scaffold_1 140204296 3939 + 233722169 [encoded data, 4283 characters]

a score=25210
s chr3           153380054 2609 + 160039680 AAATCATTTTGGTGTGCAGATTCCTGAA-AGAGATAGGGAGAGATAGGCAGGAATTGTAAGAGGCTGGGGTTCCTCTGAGTCTGTGAGCCACTCTGGAAACTTGGCCGTGTTCCCTATAGGATTGTATAGATGGGCAG-CAGAAAGCG--------CCTAACTCCAAGTCTGATGATACGACAGAGCTTTCCATCCCAGTCAAGCTGGAGGCTGCTGTCATTATCTGTCTTGGGGACTGTATGAATTTAACAAAGATGGGTCTGCTTTAGGCTTAGGCTTAGCTGAGATGCTTGGATCTTATAATTAAAG-TGTTTTTCAGTCAATGTGCTAGAAGCGAGCCAATGCTGGT-TTCCCAAGTTTCATTTATTTTTTTTTCCCTCTGAAAAATGGAGAACTTCAAGAAAGAGAAATTTTGAGTAATCATAATTATGACAGTATAGA--TGTCAGAGATCACAGAAGGAAGCCAGGGAGAGCTAGTAATTTGAAGAGAAACAGTAAAGT-CTCCAGCACAGTGGGAGGACATTTTGATCTTCCTTATCAGCTGTAGGTATGAAAAAATGAAGGCTGAATTCAGCAGGAGTCTGATGCAGAAGGAACAGCTAAGTTGTTCTGACTCTGATTTTTGAATCTTACACTCAGTTGAAGAACTATGTATTCTGATTG-CAGTCGGTTCATGCAGGTTAAAATTCCAAAGCGGGGGAGGGTCATAGAGAG---------------GACAATGTCAAGGGTCCCCCAAACTCAGGCACATTGCTTGGGGGTATGAGACAGACAGA-----------GGATGCCCACTTAATAGCAGGTTTGTTTCTAGG----AATGGAGGGAAAGGTATAATGTGTTTTCAGTTGTCTGAGCAGAGAGAAGCATCCGACAATGATGCCCCCCACCACCACCATTGACCTCAAACCACATCTGTTAAAGCCCTAGATGAACTCTGT-ATCACAGA-------------GCAGAAGTCTGTGGAGTAAAAGTAAGCTGAGTGAATTCTGTCCAGAAAAGAAGGCCAGTGGAGACC-----------------TCAGAGAGA----CAAACCAGAGACCCACTTGCTTTC-ATTATGGACTTTGATCCATCATTTG--AGCTGGAAGCCTATCTTCTTATTTTTCTTGTTGGAAAATGAGAATTCTggggttgtggagatgactcagtggttaagagcacttgctgacctcccagaggatcaagatcaattcccagcacccaggtgtgaaatctcataaatgcctg-tGCCACAGCCACATGCACATT---GGCAAATGATATACTTTTTTTAAATGTGAAGTTAAGTGTGTGTCTCTACACTGAGAGAAGAGAAACTGGAGTGGGGGAAGAAAGCATTTCTGTAGATTTTCCCCAGAAAGAAGAGGGAGTGTCACTCAGTCACTGACTAGTAAAGGGGACGGACATAAACTCAGTTCATGCCAATTTACCTAAAACACACAGCAAGGGTCTCAGGCTC------CTGATGTCTCTGAGTCTTGTCTAACCAGTCACAACCCTTGTCCCATGGAACTCCCCATCAGTGGTTGTCATACTGGATGGAAAGGACTTCAATGAGCCCACAA--ACCCTGACACACTCACGAGTGAGACAGCAGCTAAGGGCTATGTGGGGAAACTGAGATGATTTG--ACATC--TGGAGAACAATAGTTTTCAGCAGTTTTGCCTGAGAACGAACAGAATTCAATGCTTAGGTTTGTGGGTATTCGAAGTACAGAAGGG------------TCTATGGATTTAAGTTAGATTAGTTTAAGATCTTGCTGTAAACTTGTATCTTTCTCTATATTCTTT--CTTGCTAACTCAGG-----CATGGGATTTTCCTGTGGCTCACTTAGCACTTATACCTGACTCACTGGGTTACACAGATGCTCAACAAGGATCATAtttaatccattatcatcatagtggggagtatggtgatgtgtgctggaaaagtagcccagagttttacatccagatccacagacaacaggaagagagagagagagagagactgggcctaccttgggtgtttgaaacctcaaagcccactcccagtgacagactttctccaacaaggccacgccttccaatccttctcaagccatgccactccctgatgacctagctttcaaatctacaagcctagggggccattcttattcaaaccaccaAAGTGTACAGCATATTGCTCAGTGTCTGTCTCCAGT--GGGCTTCATCAGAATGATA--------------AATGATAAATTACAGGTGC-TCACACTGTCAGAACTTCTGGTTGAGAAAATGGTCTTTCCCTTTCATTTAAGATGCGATAGTATGCTGTTTTCTCAATTCCCTTCTACTTCTAGAACTTTTAAAAAATAAGAA--TTATCTTGC-----------------TGCCAGACAGAGACTCTCATTAAAAAAAATAAGTTTAAATTTTCCACCTTCTTAAAACAGCA----GTAAAATTAATCAATTTTAGTTTATGAAGCTATTACATTCCTAGGTGGTTTGAAGTGAAGGTTTACAGA---AATGGACAAAGGAAAATATGTTTTTAATCCAATAAAGTCCTGTTTTCTACAAAGGGGGCTGGGGCAGTGTACCACAGGCATCACGGCCATCATGGCTTTGGAATAATCTTTGCTTTGAAAGTCTGGTCCATGTTTGCC-TTGCTGATGAAGCACACACATCTCTATCCTGGCC
s HiC_scaffold_1 140214363 2304 + 233722169 aaataattttgtttcaaaagttataaaataaatatggggAAAGATGTCTAGGAATTGCCAGGAGACGTGGGTCCTC-ATTCCTGTCAACACTTCT-----CACAGTTCTGTCTCATATATTGCAACAGAAtctggcaggcagaaggcagaccCCTCCCCAGCTCGAGGCTAGATGGACAGAGGAAATCTTCACTGTCAGCTGAGCAGGATGGCACTGCCTTTACTTGTCCCGAGCACTGTTTGCATT-AATAATGACAGGTCTGCTTCTGGCTTTGGTTTGCCCATGACACTGGGATCTTCTGGTTAAAAATGTAGATCAGTAAATGTGCTGTGATCAAACCAAGGTTTGTCTTCTCAAGACTCC--------------------AGCAATGGAGA-CTTGGAGGAAG-GAAATCTTGAGTAATCCTAATTATGGTACTACAGAGCTGTCAGACATCACAGAAGGAAGCTACAGAGAGCCagtaatttaaagaggaaaagtaaaattCTTAATCACAGTAGGAGAGCATTT-GATGTTCTTTATCAGTCACAGGTGGGAATAAATGAGGGCTAAATTCAGCAGAAGTCTGA---GAGAGGAAGAGTTAA-TTGTTGTAACTCAAAGTTTTGAATCTCAAATTCCATTACAGAAATCCATATTCTGATTGCCAGTCACTTTGTTCTGgtgaaactcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggttcccaAGTGACAGTGTCGAGGTGCTTACAAAGCCCGAAACCATGCTTGGTGGCATAAGACTACCAGGTTTGGTAAAATTGGTTTTCATCCAATAACTGATTTGTTGTTGGAGACTAATGCaaaaaattgtgta---tatttttgGTTGATTG-GCTAAAAGAAGTACTTGATACTTTTTTCCCAAGTCCACACCATG-------------ATTCACTAAAGCCTGAAATGAGTTCTGTCACCACAGAAATAGATTGCCATGGGGACCTGTTTCGAGTAAAACTAATAT-----AATCAGCTCCAAAGGATCATGCTAATGAACGCCAACAATAGTGCCGCTATTCCAAAAGAGTATGAGATCTGAAAATCACTTGATTTTGGTTGCAGAATGTACTTTATTATTTGCAAGGTGTCAGGTTGCTTTTGTGTTTTGGTGGCAGAAATGTGACAATT---AGTCTCTACATCTACGTTAGTAGGTAGAGGAGAAAACTGA---ACAGGAGGAATAA-ATCAACCTGGAGCATA-------GTATTTCTACAAACTCCTGATG------------GTAAATTTAGGGTAAACTAACCATTAAGTTTTAAGGAGAGGCTAGGTAGAAATTTATTTCGTGGAAGA--AGAAACTGCAGCGGG----------------GTTAATTTCTC-----------------------------------------------------TAAACCTGGT--------------------CACATACGAGAGGTCCCAGTCTCTTCTTTCTGATA---CTGAGT-TCATCCCAGTTGTCACACCACTGATCCCAT---------CGCCTGCACTTATCACAGTGAATTGGAGGAACATAAATAAGTTCACAATGAGTCTGATA-ACTGAGGAGGCAGAAACCTTCAAAGGACtatttagagaaattaaaatgtttgggAACATTGATTGAGACTAGT-GTGTGTAG-AGCTTGACTGGAGACAGAATTAGATATGATTTTAATGATTTTGGGTGTTATCAGTACAGAATGAGCAAATATGTGCGCTCCGGAATTTAACTGGGCTAGAATACTGCCTTGCC---CACATG---ATTTCCCTATAGTTCTTCCCCCGGTTGCTTAGGGAAATCACATGATCTTTCTGCTACTCAC-TGGCAT----------------------------TGCTC-----------------------------------------------------------TAAAGTAA-------------------------AGATAATAG---------------------CTGTTCCTGCCCTGTGAGGT---------------------CAGTTAAA------------------------------------------------------TGATTACATG------AGAT------------------------------------AAGGTATATAATATACTGCTCAGTCGTTGGCACAAAGTAAGAGTTCAATA-AATGATACTCATTATAACTGTAATGAT-GATTACAAGGGCATCAC-CTCACAGTACTTTGGGTTGAGCAAATCTGCGTT--ATTTCA--CAAAGTTTGATGGCAtgttgctttgtt--tctctttctactGGTAGACCTGTTAAAGGGTCTGTCTTTTATCCTGCTGTCTCTGCCTACTGAGTGCCAGACAGAAAGTCTCA-TggtaaaagtatatttaaaatttccatttacttTAACTAGTAAGTCATAAAATTAATCCATTATAGTTTATGAGGCTATTATGTTCCTGGGTGGTTTGAAGGTAAGAGTCTAAAACACAATTTGCTAAGAACAATAAGACTTTAGCAC-GTAAAAttctattttctagaaaaaataaaggataaaccTGCAGTGGGTGTT---TTCATC------TTAGTATACTTTCTGCTTTGGCAGCCTGGTTcctgtttatcattctttatgga--cTGCGTGTTCCCATCCCGGCC

a score=14985
s chr3           153386902 1280 + 160039680 TAATATTACTGGCTAATTCATTCTATAAGAAAGTGACAG---CCCTTTAGGCTTTCAACTGCTACCCAAAGCCTTAATAGCCGGCAGTTCCCTAAA-TGAGACACTTTGATGGGCATTTAGGTC-TTCAGAAATTACTACCATCCTCAATTGGCTGTCCTTTAATCTACCTTTGAGCTGTGTCCCATTTCATTATTAGCAGTTCGAGCTTAAGTGAGTTTGGAAAATTACATATTGACAAAGAAAAAATGTATATTTTACCATCTAAACGCTTTTTATGCAAATGAGATTGGATTTCAGATATCATTCAAGGGAGCTTTTTAAAACGAAAGGAATGATCTTGGATTTCATTCCAGGTTGAGGACTTCAAAACAAAGGTGAGGTAGAAGGCAGTGGCAGGTCTGATATTGATTAATAACCTCT------GTGTTCTATGGGAATT----TATCAACTGAAAATAACTGACCATAAC---CATGGACA--TCAGCTCTG-----------------------------------------------------------------------------------------------------------------------------------------------------ATTGTGGGGTGATGCCGAAACAGTGGCCTGAATGACATGGGAACTCAGTTTTCCCAAGAGGAAAATCATTCATTTCAGGGGATTTATAGTTAGGGCTTTTTCAGCTTTAGCTAAATAACATTATTCAAGGAGAGGTTAGCAGGGCCTCAAGAGAACGTACTTCACACACCTTTAGATTTATCCAAGTATTTACCCAGAATCCAGGGCTGCTGTCGCCTACGATGTAGCATCTGGATGCAGGACTACCCTGGGCTCCT---GATCTCCCTTTAACATCTGTCTTGGCACGTGCCCACAATGTGCACACTTCTCGCTCATTTCTG-TGAGAGTCACCCTTGAAGCGCCTCACCTTTTGATCTAC-CCCAGATTTGCTGCACACCCTATCTTTTGTTTCCAC-----TTACTTCATCCTTTGCTTCCCTCACATATAATCTAACTATGTTTATTAAGTG-ACGGTCAGGCAGTGTATTTGCTTAAAGGGTAGCTAGATGCATAGTTTCAACCAGCTCCTTGCCAGACATATTTTAAATGTTTCC--TGAACTGAGAGCTCTGCTTTC-ATTTTCAAAATCTCCCTCGAATGAAATGTGAAATCTAATCTCAATTCCTAAACAAATTGAT-TATTGGGTAAATGAGTTATTAA----CTTTAAAGACAAGGAAATTGTGCTATTGAGGAAGAAAATTG--CAGAGTATTAAATGCAAGTCATCAAAATATATGTGGTGGTGGAAAGTCATTTCCCAATGACAGCTTGCAGTATGCAGTTCATAAACACACATCAGCCTGTTTCAGTGAA--------------------GCCCATATGATGGTAGGAA
s HiC_scaffold_1 140219058 1290 + 233722169 TGATAATACAGGTTAATTCATTCTAAAAGTG-GTATCAGTGTCTCCTTAGGCTTCAATTCACAACACAGTGCCTCAGTGAGCAGCAGTTTCCTAAAATGTGATA-TCCGATGAGTCTTTGAGTCCTTCAAGAATTACTGCCTTCTTCAGCAAGTTGTCCTTCAATCTGTCTTAGAGCTGGGTCTCATTTC-TTTCTAGGAGTTTCAGCTTACATGAATTCAGAAAACTGCATATTGACACAGA---------------------------------------------------------------------------------------------------GTCCTCATTCCACACTGAGGACTCTAGGA-AACGGTAAAGGGTAAGGCAATG---AGACCGTTACTGATTGATCTTCTCTCTATTGATCTTCTGTAGAAATTTAACTATCATCTGACAATAATTTACCAATACTCTCAAGAACATGTCAACTCTATTTTTTGGGTtgctttgggttttcttttccttttttattagcacatgttgtGATACATGGTAAATGCACTCATCGTGGCCACCGCTACACATACACGTCGGATCTCAATTCTCATTACTTCCTGTCCCTTCTCTTGGCATCCTATCATTATTTTGAAGTTACACTGAAATATTGGCCTGAATCTcatgg---------------aagaagaaaaacattaattttaaaggcATTCTCGTTAAGTCCTCTGCA-TGTTGGCTAAGTAACACTA------------TTACTAGGGCTTCCTCATGACACATGT--CACGTTTTTAGATTTATTTAGTTACTTAGCCAGCTTTCAGGACAGGCCTTACCTATGATTCACCATGCATGCGTGGGAATGTCAAAGGCTCCTCCAGAATGTCTGCTCACCTTTGCTCTGGGA---------AATGAGCAGaagtgttttttatttctgaagaaagAGGTGCTAGACTTTTCCCACCATTTGCTCTAAGCACATATTTACTTCATATATTATTGTTCTTTTATGCACATGTTATTTGACTGCTTGTTTGCCTCACAAGTAAACTAATACTAACTATAATATGTACTTTCATCCCACATGTATTCTTAAATTAGTTTTAGATTCATAACTTTA-----------------------TTGGATATTTCCAATCAACT-----CACTGATacctatctttaaaat---------attaag---------taatcCATATGCCT-------TTAATATATTGAAACAATAAACTATTGCCTCTCTTTTAAGATAAGGAGAGTGGAATATTGAGAAACAAGGTGAATATGAATGCCAACTATGAGTTACTAAAATGTACAATGGTGCTAACAGTCACCTCCCAGTGGCAGCTCATAATATGCA--TTATCCATATACACCAACCAATTGTGGTGAATTCAATACAAATGCAGTTCTGTTCATATGATGATAGGAA

a score=38219
s chr3           153392571 825 + 160039680 TTTCTCACAAGGCTGAGTCTTGCCTTGCAAGCTTTCTATTAGAGATAGACCTTGCCGCACT--AATGTCCCCA-ACACATGATTGCAAACAAAATATAGCCCGCGTTAAAGAAGTGCAGAGATGTTGTTAAGCTTAATTAGATGTCATTGTCACACTTTCATTAGCTATTAACATTATGCAAAGATAAACTAATACAAAATGAGTTCTTTCATTGTGACATAATTATAATTTTAATGGTTACACCATGAACATTATAATTCAGGGCATATTTTCAATTTTCCCATTAGTGGGCAGTTACTTATAAGGGTTCCTATTATGATCTGTCCACAGAGACCAGGTTATTAATGCCCCCATTTTCTACACTGATGAGGACCACAGT-TTGGAATCAATATGACAGTCACAAGGCAGATTGCAGAG--ACATGGAATAAACAGGAGAATGACTGCCATG----------CTCAGTGTGCACCTGAGGAGGTGGCGAGGTGGAGTAGAAGACATAAGAGATGACCATTCTCTAGGAGAGATTCTGATTTCCATGGTTTCTTCTGGGCTATTT-TCCCTCATTTTTTTTCCTTTTGTGGCCTTAAGTCCTCAACT-TCTTCTAAGACAGTTTC--CCATATAAAATATTCAATAGCCTGGGCTTTGAAATATGTCTTAAACGGTTTTTATCATGCAGAGAATTAAATTTTAAAAAACCACAGAGCCATTTCTGGGGAAATTTTTCAATGGTTCAACTTCAGGATTGTGTGTGAAGTAGAAAAATGCTGATGGACAG--TGATTCGCCTCTGAAGA-GGCGAGGAGCGAGGGAACTGTAAGCAGAcagaaggtagagg
s HiC_scaffold_1 140226239 827 + 233722169 ttttgcagaGAACTGATGGTTACATTCAAAG--TCCCATTCAAGATAGACTTTGGCTTAACTAAATGTTTCCACAGACACTATTTCAAGCAAAATATAGCCTGTTTATAAGAAGTGCAGAAATGTTGTTAGGCTTAATTAGATGTAATTGTCACACTTTCATTAGCTATTAACATTATGTAAAGATAAAC--ATGCATACAGAGTCCTCTCATTGTcac-taataataattttaatgattatatTATGACCACTATAATACAGTGCATATTTTCAATTTTCCCATTAGTGGGCAATTATTTATAAGGTTTTCTATTACGACCTGTCCATAGAGGCCAAGTTATTAATGCTTCCATTTCCTA---TAATGATGACCACAATGTTGAAATCAATATGATAGCCACAGGGAGAATTGCAAAGTAACATGGAAAGAACAACAAAACTACAACCATGAAGCAGTTCATTCAGCACATGCCTGGGGAGATTTCAAGTTGG---AGAAAAAATAAGGTATTAATATTCT-TATAAGAAGTTCCAGTTTACAAGGTTTCCTCAAGTATATTTCCCCCTCATTT-------TTTTATGGTTGAAAGTCCCCAACTCTTTTGTAAGACAGTTTCtatcatataaaatattcaatagcCTAGGCTTTGAAAAATGTCTTGAACAGTTTTCACCATGCggagaattaaa--ttaaaatcccACAAAGCCATTTCTGGGAATTTTTTTGAATTGTTCAATTTCAGGGTTGTATGTCAAGAAGGAAAATGCTGATGAACTGTATGATTTATCCCCACAGATGATGAAATCTGAGAGAAATTTATTAGAACAAAGGCTGAAAG

a score=47060
s chr3           153395503 1643 + 160039680 AAGCCCCACAGAAATGCATGgacttctggcagagtcactacatttgttttgatcttagcttttcttgcctgtaaaataaatgcgctggactCATTTTTAGCTCCCCATCTCCT---------CCCCCCCTTTCTCTTCGCCCACTAGACTTGTTTGtggagattcttgagctat-----atatgaaatctcagaaagttgagcagggatagtttaatttttccccctcaataca-gaacctgactgaaacatttgccttccaggcttttgagcagaactatattgtttcaatatgggctccctagttaccagaatttctgatggaaattgtatttgtcttagatttaggaaaacagaaaaacaaattaaatgctaactagcaaatacatcatttctcacaaatcacaccattcaaagcataaagttcactttggaaaaGTCACACCAAGGCATACTGCATTGCATGCCCCTCAGCCCGA-----AGAATCTCAGGGACTAGGTTAGGTCAGGGCATGAGAGATCTAATCCTAAGAGAGCCTGGCTAACACTGCTTCTAGTGTTAATGAGCTACCATCCCTCAAAGCCACATCACTCCCCTCAAGGACTGGGTGAT-GCTGTGTGTTAGGTTCACTCTGAAGGACAG-GATAGAGCGTCGAGTCCATCCGCCCTTGCCTAAGTC----TCTCATAGAG------------------TAAGTGGAAATTGCAACTTGTCACACAGTAGTAAATGACATCTGGAAAATG-GAGTTTGATGCCCAGGTCAGAGAG--GGGTGGTAGGgggtgttgccagggaagggctctctgacaaggtgtcatctgagtcaaggcctaagagaataaatgaaggagaaaactcctgcagcta----tctggagATGTCCCAGAAGTATTGAATTATGGGGTCTGTGCTTTTCAAAGTAGGAACATGATTCATGT---GCATTATCATAAGCTTTACTTAAGCTAACATATTTATGAGTTCATATTCTGGGCAGACGCCGGGCTT-TAGAAGTACATGGTCTTGATTTCCTAACGGGTCTGTAGGGAATTCAGATGCAATCTCTAGCCCATGGATTGCCCATCTGTGAGGTAGAGCCTAGACTTCAGCATAAGACttcttttttttttttttttttttttttttGCCTCGAGAATCCATCTCGGCTCACTGCATATCCTTGGGGGCAGCATCTTTT-TAACTCACGCTGGGATTTGCTTCGTCTTGGCCAGGTTTCTCAGCTACTTTCACTTCCTACCTACTGACATCCTGATGAGTGTTATTTATAAATATTAAAAACAAGGAGGTGAGACCGGATGTAGAGAACCTGCCTACACATGCCAGAGCCTC-----------------AGCCAGAGAACGTGTCTCAAACATCAACAGCGCCTCTGCATCT-GGACAATGTCTGACACCTACTTATCACCCAGGGAATATGTGCTCGGGAGACATCTGCAGAAGGCATGAATGAAGCTACTCTCTGAGCTGCCTA--TCAAACCCAG--GAGCGCCCCTCCTTAGTAGAGGAGCTTAGTAGGAGTGCATGTG----------------GGTGTGTTAGTAAGCAGGATGCTCTCTATCTTTGATGAGAAGGGAT-GCAGCTGC---CTCAGCTCCTAACAGACG-------------------CTTGAATGCTTGCATGTGCACAGACCCTTCATAGAA-GCGCACTTTAGAAATGGAAGccatat
s HiC_scaffold_1 140228086 1666 + 233722169 AAGCTTCATCACAAAAGATGTGCTCCTGAGAAAGTCACTAGTTTCTCCCTATTCTTGGGTTTTCTTGGttgtaaaatgaatatattgGGTTCCTGCATGA------ATTTCTTTACAGAGAACTCTGCGTCACTAAGGGACCGATGAAGCTGGCAATTGAAATT-TTGAcccatgggaaaaaaaaaaaaaagaaaagtcaatcaggaattatttattt------acttaatacaTAAATCTTATTGAAATAGCTGCCT--CTGTGTTTTGATTAGAATTGTATCACTTCAGTGTAGTCTTCTTGGTTATCAGAATTTCTGATAGTAGCTATACTTGTGCGGAATttagaaaaagggaaagataaaTTAAATACTACTTT---AATGTAC--TTTCCTGTAGAATACATTTTTCAAAGTGTAAAGCTCACAgagctaaaattataaaaaaggacaccagagggaaagg-----agacagagaggtAGAATTTC-----CTAATTTTTG--------------ATTTAAGCCTAAGA---TCTtactaatattttttata---ttaatgaatGAACAATCTTAAACA----ATCACTGAAAACTGGGTATGAGTGACAGCCAGGATTCAGTTACTCTTTGAGTGTTTGAGATACAGCACTGG------------TGGCCGAAGTCCCATTCTCATGATGAGCATGACAGAAGGCTGATAGAAGCAAATCCTAGTGTATCAGGTCACAATCAGTGAGATAAACAAAAAGTGATCTTGAGAAGCAGGTTGAGGGATCAGGTGACGGAGGGTATTGTCAAAGAAGGGCTCTGTGATAAGATGACATTTGAATCaagaccaaaaagaa---atgaaggagaaaaatcaagtaGATAGACATCTGGAAGGGATCCAGAAATACTGAGTTACAGaatacatgttctttaaaataggaaaatgattCATCTTCTACATTATCATAAGCTTTGCTTAAGCTAACATATTTATGAGCTCATAGTCTGGGATGACTCCAGTTTTATAGAAAAACATGGTCCTGACTTCTTAACGGGTCTGTGGGGAATGCAGGTG-AATCTGGAGCCCATTGTTTGTCTGACAAAGAGGTGAAGCCTGGACTTTGGCACAGTACTTATTTTTCC-------------------AGCTCAGGAACACCTCTTGGTTCACTGTACGT--TTGTGGTCAACATATCTTCTTGTTCAAGCTGGGATTTGTTCTGTCTTGGCAGGGTTTCTCAGCTACTCTCCTTTCCTACCTACTGACAGCCCGATGAGCaggatttataaatattaaaaataaggagGTGAGAAAGGATGCAAAGAATCTGCCAACACATGCCAGACTCTCCACTGAATTATCAGTAAAGCCAGAGAATATGATTCAAGTATCAGTGGAATCTCTATGTCTAGGACAACGTCTGACACCTACTTAACACCCAGGGAA-GTGTGTTC-AAAGAC-TCTGCAGCAGGCTTGAATGAAGCTAATGTCTGTGCTGCCTATCTCAAATCAAAATAAGAGTCCC-CCTGAACAGAAGAGCTTTGCATGGATGTGTGTGGTTGAGGGTGCACGGTGGTATGTTAGTAAACAGgatgttttctatcttttatgaGAAAGCATGGCAGCTGCTCACTAAGCTTTTAATAGAGGAAGTTGCTAGCATTACATTTTTGAAAGCCCCTATTTGCATAGACCCTTTATAGAAGGCAGACGTTAGAAATGGAAATGGTAT

a score=45464
s chr3           153397593 1153 + 160039680 agaaaTGGAAGCCATAGATGATCACCAAACCTCACTTGCACTACAAAGTTGTGCCTCTTTTTTGTGATTTCTGGACCTGTGGATGTGCTGACAACCGAGTTAACGTCTCTGAAGGAGGGAGGATTGCCGCCTCTCATCGTCCCCCTCGCTATAATTTACATGACTTGATGGAATTAGACTGTTATTTTCATCACGGTGATGTGCAAAATCATAAAATGATGTGTATTTTGGGAACACCTAATTAGTTCTCCTTAGTCCCTGTGAGGTTTCAGTTATGGCTCTGAGCCACGAGAATATCAGAGAGGTCTGTGCATCTTGCCTTAGCAACCACA--GAGACAGTCCAAGGACTTGAAAGGAAAACTCCCATAGAAGGCAGG-GGGGACGAG-ACTCGCAGT-------------------TCACACC------------GTGCTGCCTGCTCAGAGGCC---TTTTATATCACATTATAAGGGATGAATTTACAGCTGAAGCCTCTATTAATCAT-CTCGATGGCAGGATTACAGACACGGACACAAAAAGTCCATCTCTCTAGTCACAGGCTTTTTTTTTTAAATCAAAAACATTAACTAATATTGATCAAAC---------------TTTGCTGTAGCATATAACCAGCAACTGAAGTGAGAGCCGCATTTCACATACAATTGCCAGCACCTTGTGTCACACTTATAAATAATGGCCCGCTCCTATAGAGCACCATCTGCTTGATAGAGGAAAATGTGCGTCGTAATTAGGAAATTCTTCTTATTATTTaatatttattgaacagccacaatgtgcctggcaGCAGAAACACCAGAA--ACTCTCTGCCCATCAAGCATCCACCTGCTCGGGAAGTAGGGTGTGCCAGTTTTACTGCAGTTTCTGCTCT--------TCTTATTTTCTGTATTTGGTCCAGGTGACAGAGCTGCAAGTAGCTCACGATT------------TCCCCTAGCTAGGGTAGGATGCTAAGCTCTTGGATGGCTCCCACTGGAGGTCAAGAGAAGGAAAGCGGCAGAGGCATGGCAATCTCCACGGAGCACAAACAACTGAGAAGTGCTCCACTGATGGAAGTTCAATGCTAATGCGCTCCTAAGTGGAGCTGAC-GGTATCTGTTGCAGCCCAACGGA-TGA----GGATAAACACAACAGAAATACAAAACATGGCTGCAGGtggtgtcaactgtcaacctggcaaa
s HiC_scaffold_1 140229735 1204 + 233722169 AGAAATGGAAATGGTATCTGATCACCAAATCTCACTTGTGCTAGAAAGTTCCGCCAGTGATTTGTGATTTTTGGAAATGTGGATGTGCTGACAACAAAATTAACTTCTCCAAAGAACTGAGAATTGCCTACTCTCATCATCCCTTTCACTATAATTTACATGACTTGACGAAATTAGGCTGTTATTTTCATCGGGGTGATCTGCAAAATCATAAAATGATGTGTATTTTGGGAACACCTAATTAACTCTCCTTAGTTCCACTGAGGTTTGAGCTACAACTATAAGCATTGCAAATCTCATAGAGGTGTTCACATCCAGTTTTAGTAATCACGATGAGACACTCAAAGGActtgaaagaaaaatgtcttcaGGAATCATGCAGTGATGAGAAATCAAAGCAAATGGTGGGCTTATGCGATAAAACCAGGTGTATCCTTGTGTTGCC-------AAGCCTAGTTTTGCATGA-AGTACAAGAAATGCGTTCATGGTTGAATCcagtattaataataaaaaacagcagGGTTAAAGACATATACACGCAAAGTCCG--TCTCTACTCGTAG--------CTTTTAATCACAAACATTAACTAATGTTGATCAAGCTGTTTGATATGAAAGTTTGCTTTAATGTGTAATCAGCAACCAAAGTGAGAGCCACATTTCCTAGACAATTGTCAGCACCTTGTGTCATGCTTATAAATAATGGGCTATTCCTATGGAGCGCCATCTGCTTAATAGAGAAAAATGTTCATCTTAATTAGGAAATTCTtcttattatttaacatttattgaacaccCACAATGTGCTTGGCAGCAAAAACTCTAGAAACACACTCTGCTCACCAAGAGTCCACCTGCTAGGGAAATATGATGAGCAACTTTTATAGGCATTTCTGTTTTTaacatacttttatgtttttttttt----caggtgacAGAGTTGCAAATGGTTCGCTTTTGGAAGGGTCTTCTCTCCTAATTAAGCTGGGATTGTAAGCCATCAGATGAGTTATGATGAAGACAAAGAGAAGATAAAGGGCAGATTAATTACAATTGCTGAGAAATCCATG----TGAAATTTGCTCcattgttagaaa-aaaaaatgaatgtaccCTCAAATAAAAGTAACTGTTACTTGCTAAGAACTGACAGAGTGAAACTgcagaaatatatataaaataaagaacatg--taTTGGAAATGTCACCCGGAAA--TAGCAAA

a score=98458
s chr3           153399312 7105 + 160039680 [encoded data, 7786 characters]
s HiC_scaffold_1 140231121 6984 + 233722169 [encoded data, 7786 characters]

a score=25982
s chr3           153407940 2542 + 160039680 GGTGCTGTCTTCTATGTCCTGGTAACCAAATGAG--------GCCAACTTTCTCTCTATAAAAACA-----------------GAA------GATAAAACACCACCGTTTTGTAACCCTAATAAGCTCTTGACTCTAGACAGTTACCATT-AGTGTTTCTA-CTGTAAAAAGAGGAAACTGTAAGGAGTACTTC------CTTGACAAGGATCACATGATGCTCTTGGCAAAGGAATAAATACTAATTGGATCTGAGTCTAGGCATTCGTTCTCAATGCATATAAACCAACGTGGAAGAAATAACATG-AGGTGAAGTTAATAAAACTAACT------AGATGGTAAAACACCCAGGCGGCTGGGTTTCTTCAAT------------------------------------GAAAAGTGG------------TGTAGG-------------------------------------GAAATGGCTTCACTG-----TAAATACACACACTGGAACTACACCATGCAATTATCATACATGGACCATATGCTAATGC----------------TTGAATCACATGTACCAGACAACTGTCGACCACTGCAAGCCAAGGAAACACATGATGCTATCAAGG--GCATGTTTGCATTTCCATGTACGATGTGGGT-------TTTTCTTttgtcttttaaa-acacgcagtgatatttaaagatggaacacaatgaggtgtgaagtttgctttaagatactgcttggggaagaagacagtgtgtggg----atacatctgaac-taagTTAGTCACTCCTCAGGCTGAGGACTGGCTCTACGGAGATAAAG-GCACTACCAGCCTCTGCTCTGCGAGTTTGACATTTTTCTTACAACAAGTTTTTAAGAGATATTGTTGATGCTGAGAATCTGGCTATGTTTAAGAACCATTACTGCAACCCAAACCTCAGTTGAAATCTCCAAAACACTCGAAAAAGCTGGGATGGCCCTGAATGTCTACAACCCCAGAACTgattcctgtgagccgttgctcagtcagctttgccgaaatcatacgctctggctcaagaaaagaccgtgtctcaTCCAGTAAGTGACCAGAGTTCTACCTCTGGTTGCCACCTGTGTACATGTGTATAACACATATCCACATATTCA--GAGATACTG---CTTGAGATTT---GTCACTGTGTGCCAGAGAACAACAGGAATCATTATACTCAACACACACAA---GGCTAGATTTAAGTCCTGGTGGAGATGGAAGCCTTTGAGGCCATTGAGGCCAACAGCAAGCTGAGCAGCCTGATTCTACCTGTGCATTTTAAACCCTTGTCCGTGGTAGCTAGGGAGATGACACTaagtagaa--aaggaaaaagaaaaagaaaaaaaagaagaaAGATGTACCATAAAATCATTTGACGTTTAA--AAGAAACTTAGCTTTTGTAAC----CCCATTGATTGATAATCTGCAAATTAACTTTGCCAA-------GATAGCACTAAG--------------------CAGCTTTTCCCATCATAGACA--TAGAAAACAC-CTCCCGATGTTACTTGC---CGATTGCTCTACAA-CCTCACATCTGTTACAG---GGCCTCT--GGAAGCTCACAGTAAAGGCCAATATGCATGAGCTC-CACGACCAAACAGCCCACTAAGTTCTTCTCTGATACCCCCCAAATGATCCCCAGGCGTATCGTTGTAACTCAGGGATACCCTAAGGGATAGCTGTAATGAAAAACCAAATACAGCTAATTAATTGCATTGCTCGGGGCTAGTGAGAGACCAGAGGTTTCAGAAGCCCCTAGAGGATGATCACGTTTGTACAGAATGG-TGCCACATGTGAGTGCAGTTCTTGCAAACACCAGATCTGCCTATCTCCATCGCCCGA-------CTCTTTGAATGGCTTATGCCACACTAATTTAGATCT---AACCTTCAAGGTTCTTCTTGCAGAAGAGGGGCTTCTGT-------------TACAGTGTTGCTCTGTTTTGCATT-----TCAGGTGAAGCTGT-ATTTTAAGGGCTCagaaggaggaagagagagagagaaagagagagaATATGAATGAATTATGCTATTTATTAAGAAAGTTGAAAAGGCACTCTTTTGGGTGGAAGTGGGGGATAGTGAGCTGGAAATACAGACCACCAAAACCTCCCTGCCAAGACTGGTAGCTCATAATAAGCACTGAAATTACACCTGGAGACAGCAAAACCCA---GCTCCCCACAAGCACATGCCCA-ATACTTATAACTTCCTATTCAATAATATTGAGTAGTAAAAGACAGGCATGCATATTAAGGAAATCAGAATGTTGGTACTGCAATTAAACTTGAAGCTCAATTTATTCATGGTATTGCACAAATAAGCAAAATTCACATATAATTCAAAACTCCAGGCACAGGTTTTCTGATCTT-CTTCGGCAATTCTTTATTAGCGAGAAACATCAG--CCAAGATTGATCGGTTTGTCATTTTGCTTCCCCCACTTGTGCTGGCTGTCTTTGTAAAGAGACAGAAAAACCAG-----CAGATGATAGAGCTGCCTGAGAGGCTTGGCTATGAAGGAGCTAGGAGAGGAAGAGGAAGATGG--GGGAAGGGAGGAATGA---GAGGAAGGTTCAAGAAAAGGGAGTCG-------GGACAGGGTCCAGGACAGGAAAGCATACACACACACACACAAAG-GAAATTTGGGTTTTAGATAAATGGGTGAAGGGTATTTATACTGTATATCTCTTTaacaaca
s HiC_scaffold_1 140239336 2379 + 233722169 GGTCCTGTCTTCTATCACATAGCAACCAAATGCATACTAGGTGTAAGCTTACTCT-TCTAAAACCACATCAGctgatagatgagaaaactgtgaTGAAACATCATCATTTTGCAACCATAATAAAAGACTGGATTTGGACAAAGATTTTTTAGTGGTTTTGGACATAGTAAGAGAGAAAACCAGATATTATTCCTGTAGACTTGCTA--GACTATCTTAAGGACCTGGCAAAG-----------AATTAAAACTCAGTACAATCAAAC---CTCAACACAGAAATACTAACATAGAAGAAATACCATGGAAGTGTAATTAGCAGATTTAGATTGCAGGAAGTGCTACAAGACTT--GTAACTAGGTTTTTTTAATAgcagagtgaaggaggaggagaagggatggGAGGAGGAAGAGTGGAAGAATAAGAGGTGGAGGAGAAGAggcagaaaggagggaggaagggattGAAAAAGAAGTAGCTCTACAGATTGAGAAATGTA------GGAA--ACAGCAGTTAATTACAACATATGAAATTTATGATAATCTGCATTCAAATGAATTGTTAAAGTATATTAATGAGACAATTGGAGAAATTTGCTAACTGGCTAAGCATCTAATGATGTAAAGGATGCATTGCTG-ATTTTCATATAGGACAGTGGCATTGCAATTTTTGGTTGTCTTTCAGAGATATATACTAAACTTTTATGAATGAATTATATGATGTCTAAGGTTTGCTTCATGACAATGTTTGGAGAGGCAGGAAGGGTATAGATGAAACAAGACTGAACATGAGTTAATGATTATTTGATCTAAGTAGTAGCTATACAGAGGTTCAGTACACTACTAGTTCTTGTTTTATAAGTTTGACAGTTTgctta-------------agaga-------------------------------aaaaattatt--------ttaaaaattgtttgaaatTTGTCAA-------------------------TGAATGTCAGGCACCATGGGA------------AACCCTT-------------------------------------------AGACAGTGTGTC-TTTAGTA--------------CAGCTCaggtt-------------------aaaatataaatttaaattatcatggGGATATCAGCCTTTGATATTTTATGTTAGTATTTGTC---------CAG-----ATTCTACTTAAATCATCCATTCTGCCTATTTCTAA---------------------------------------AACACCAGCATAGTTATCCT--------CTGTCTGCTTACAGCACTC---------AGCAAAGCAAACACCAAGCAATAGActcagtgtaaaaaaaaaaaaaaaaaagcaagag---tgcATCATAAAATCATTTCAGCCTCAAGAAATATACTTA-TTTTGGTAATTCTACCAATGGAATGATACT-TGGAAATTAATTTTACTAAACAAAGTGAAATTGCCAAGTAATTTTCCCACTGTACAAACAGCTTTTCTTATCATGGTCAGTTAAAAAACACTCTCCCAGAGCTGTTCTCACTCAATTTTTGTATAAGCCACACATCTGTGACAGTGTAGTCTCATAGAAAGCTCACAGCAGAGGCCAACA--CATTAACACATAGAAACAAACATCACACTAAGTTCATCTCTGATACCCC--AAATGATTCTAGGGCATGTAGTTATGACTGGAGGATACCCTGAGGGGAAACtctaatgaaaaatcaaatacatctAATTAACTGCATTGCTCTGGGCTAGTGAGAGACCAGAGGTTTCCAAAGCCCCTTAAGAATTGTC---TTAATATAGAATGGTTGCTACA--TTAGTGCAGTTTTTTGAAGTACTAGACCTTCCACTCTTTTCAGCCTTATGGCCTTCTCTTTGAACAGCTTATACTACAATGATCCAAATCTAAGAATCCTTGAGATTCTTTTC-------ATGAACTTTCATAGTAAAATGGAACTATAGTATGGCTTTTTCCACCATTCATTGTTTTATGAAGCTGTGAGCTTTGGTCCTCAGAAATAGAAAATGCTA---------------AATTCAAATCAACCAACATTATCAGTAGGAGAATTG-------------------------------------------------GCTTacca-------------aagatttttaaataaacaccaGCATTGAAACTGTACCTGAATATACCAGAAACTACTCTTCCTCCTCAAGATGATAATGATATAGTTAAAACTTTACATTTGACGATACTGAGTAG----------------ATTTTGAGGCAATCAGAATG-----------------CTTGAATCATACTTAATTA-------------------------tcacaaatcatttaaaattttagccaCTGGTTTCAATATCTTCCTTTAGCAATTCTTTACTAGAGCTAATTGTACGTATCAAGAGTGCCTGGCTGGTAATACTGTTCTC------TTTACTGGCTATCAttctaaagag---gaaaaacaagggGGAGAGATGAGGGAGCT----------------CAAAGTGGAGCCAAGAGAGGGAACTGGAGAAAGcagggaaggagaaaatgaagcGAGCAGGCCTGAagaacagaaagtagaatggttGATCAGGGAATATTGGAGGAAAACAAATGGATGtaattaaaaaatgcaaagtgGTTTTTGGATAATTGAATGAAAGATATTTATGCTTCCTTTCTCTTCAAGAATA

a score=47697
s chr3           153410959 1502 + 160039680 AGTAATACATAAGTTCAATACAATATTCTGGTTAGTGTATTGGATACTAATGTGCAGCATTCAAGAACACAG----GGTATGTATG-----AAGCTGTGCAATCACTAGGCGGTCAATAGTCTGTTCTATCTCTCGTCTCAGAGGGGAGAA-GGAGCCACAATTTTCA----------------TGCGTTAAAATCCTGAAATTCCTGAGTATTTCTGTAGT---------------GAAGACTTCTCCA--AAACAAAAATCCAATTTAATCAATATCAAACTGAGCTACATAGGAAGAGACCTAAAGACATCCTAGAGAACTATCCACCATTTCTCAGAGCCTCAAACCTATTAAAATGGAGAGAACAGAAGGCAG---------AATCGATGGGACCTCTGTGTTGGCTCATGACGTAATCATAATGATCAGAAACACTGAGTGGTCTATTTAAAAAATAACTCCGTTCACTTGACAGCCGGCAGAGGGACTCGGCTAAGATGCACCATAAAAGACAGTAAAAGTCGACTAGGCTGTTTGAGAGGACTCACCTGTCCTTTCCAGTCTCATCCTTAAACACTCTATCGCAGTGAGTCATCTGCTGCTCTGTGGTCACGTAGATCTGCGCATCTGGATAGGCATCAACTGTCTTCTTTAACATGTTGTACACGATGCCATTACCATCCTTCCTCATGTTGCGGAAAGGGCCCCAGATAACATAAATGGTCCTGCTTGCTTCTTTGAAAAAATAGTCAGGATTTTTCAGCAAGAGAGGGACACTGGTATGTGACACAACTCGGACCATTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGGTTGGGGCGTTGTTCATTCTCCAGATGCAGGATGCATGGTCTATCTCTTCCCCCACCTTCTGCCCGACCATTTGACCTGAATTTGACACGATGGCACAGTGGTTACAGTTCAGTTGCAAAGGCTGAAAAAGAGAAAAATGAAGAGT----GTGGT--------CCCAT------GAGTGCTTGAGGA-ATCAAAATGTCATTAGTGTACAATGAATGAGTGTGGAGTTATCACTGACACATCT---CTATTCTACAGTCTCTGCTACAGGTGTAGCCTTTATTGGACCTGTGCTGTTAT----TAGAAAAGTAAATACATCCTGTTGGAAAGATGACTTGACTGTCTGCATCCCTATGTTAGTTCAAAATCA---TGTGGAGAAGCAGTCA------TGCC-----------------TTTTCTCTCTAAAT-----GAGGAGGTTTA---TACATTTAGAACCATAGTTTCCAGT-----------------------------------GATAAGAAAGTATGAAGCTATT-----TCTAGGATAAGGACAGTGGCTATAAAAGAAACTCCAGTG----GTATATACCAAGTCATGCATTTTGAACTTTGGTGCTATGTATGCAAAGAGTAGGTGGCAGCTGAT-AATACTATGAAGAG---GACACA-GACGAGACCC--------------ACTTAAAACAGCCCGAGTC---------TTATGCTGATGTTTAAAAGTCC--CCCAAGTCATCCTATTAATGTGCCTCTGGGCTTATGTTGGTTTTACATGGACAAGGTAAGGCCTCTCTTGAGAACATGGAGAGAACACGCATGCAGTTG
s HiC_scaffold_1 140241733 1654 + 233722169 AGGAATGCATAATTTCAATATGGTATTTTACTTAACCTATCACGTACCAAGTTAGGGTATTCAAGATCACAGCGTCGATTTGTGTGCTCCAAACTTGCCCTCTTATAAGGGAATCAATAGCTCGTTCCGTTTGTAGTGTCAGATTAAAAAATGGTGCCACAATTTCCAGAGGAGTTTAGGTCAGTGCTTTA---TCCTGAAGTTGCTTAAGATTTCCATGTTTTGAAACAGAAACCCGTAGACTTCCTCTTTCAGCTGGAATCCAATTTAATCAATAGCAAATTGAGCTTCATAAGAAAAGATCTAAAGATATCTTGGAACAGTACCCAGTGTTACTTGGAGCTTAACACCAATTAAAACGGAGAGAACAGAAGGGAGTGTAGGTGGAATTAATGGGACCTCGCGGCCGGCTCACCAAGTAATCATAGTAGTCAAAAGCATGTACCAATCAGTTTAAAGA-TAACTCTGTTCATTTGATAGCTGCCCAAAGAGGTCAACAAAGATCTAGCTTGAAAGACAGTA------GGGTAG--CTTCTGAGAGGACTTACCTATCCTTCCCAGTTTCCTTCTTGAAAATGCCATCACAGTAGCTCATGCGCTTCTCTGTGGTCACATAAATTTGGGCATTTGGATAGACATCAACTGTCTTTTTCAACATGTTGTAAACAATTCCGTTGCCATCCTTCCTCATATTGCGGAAAGGGCCCCAAATGACATAAATAGTAGTGTTTGCTTCCTTGAAGAAATAATCAGGATTTTTTAGCAAAAGAGGAACACTGGTGTGGGATACAACTCGAATCATCGTCATGCGACCAACATCTTCTTCATAACCCTTGGTGGGGGCGTTGTTCATTCTCCAGATGCAGGAAGATCTGTCTATCTCATTCCCCACCTTCTGTCCGACCATCTGGCCTGAGTTTGACACTATGGCACACAGTTCACAGTTCAGTTGTAATGgctggaaaacagaaagagaaagaaggcaaGTGGTGCATTTCACCCATTCAAACAAACCCTTCTGGAGAACAACACCGTGATATTGCCTAACTGCTGAATAtggaaatatttctgaaataagtATGCTAATCTGTAGTCTCTGCTATAGG--------TTATCAAGACAGCACCACGCTTCCATGCAAAAGTAAATATATaccatt--aaaaatcatttaaacttCTGTATCATCATGTggcaataaaataaatgtgtgagAAAATAGTCAGTTGTTTGCCATTGTAAgtggtaatttttgtttttttcaattctaCAATGGGCTTTGTGCTACATTTTCATCCTGAATTTTTATTATGCCTATTGGGGAGTAGCCTATaacttcaaacaaaataaagagatatgtaAAGATTTGCTCTCAGTAATATGGTGAGCAgctataaaagaaacagaaaagaaatgtagACATC-AGTCCCGTATTTTAG---TTAGACATATTCATGCTTAGCTAAGAT----GCtgataaaaaatgtgaaaagtccAACAGATGACGAGGTTCTGAAGATTgccagaacccagaactgcatAAGTCTGGAAAATATTACACAGATTCTCAACAATTTTACCCAGGTCACCAGGTTAATTGGCTTTTGTGCTT---TTAG-TCTAGATGGGTGAGGGAAGGTCTCTTTTAATGACTCGGGAAAGGCAGGCACACAGATG

a score=4537
s chr3           153411459 397 + 160039680 ACCTGTCCTTTCCAGTCTCATCCTTAAACACTCTATCGCAGTGAGTCATCTGCTGCTCTGTGGTCA----------CGTAGATCTGCGCATCTGGATAGGCATCAACTGTCTTCTTTAACATGTTGTACACGATGCCATTACCATCCTTCCTCATGTTGCGGAAAGGGCCCCAGATAACATAAATGGTCCTGCTTGCTTCTTTGAAAAAATAGTCAGGATTTTTCAGCAAGAGAGGGACACTGGTATGTGACACAACTCGGACCATTGTCATGTAGCCGACATCTTCCTCAAAGCCCTTGGTTGGGGCGTTGTTCATTCTCCAGATGCAGGATGCATGGTCTATCTCTTCCCCCACCTTCTGCCCGACCATTTGACCTGAATTTGACACGATGGCACAGTGGTTACA
s HiC_scaffold_1 187025461 394 + 233722169 ACCTGTCCTTGCCCGTCTCACCCCGGAAGAGGTCGTCGAA---------CTGCTGC-ATGCGGGCGGGAGAGACGGCGTAGGCCTCCATGTTGGGGAACGCCAGGCCTGCCCGCT---GGATGACGCGCACCAGGCTGCCCTGCGGCTTCTGCATCTTGCTCGGGGGCCCCCAGAAGATGAACACGGTCTCGGGGGTCCGGTTGACAAACTCCTGGGGCCTCCGCAGCACCCGGAATACGCTGGAGTGGGCCACCACCCGAAAGGTGGTTTTGTTGCCTACATCAGCCGAGTAGCCCGTGGTGGGTGCGTCGTTCATGCGGATGGTGCACTCCGCTCGCTCAATATCGGGGCCCAGTTTGGTGCCCAGCAAGTGGCTGGAGCTGGTGACAATCACACACTGGTGGCA

a score=33715
s chr3           153415900 1594 + 160039680 GAAAAGAACTTGCATATCACCTTGAC----------AAGCTGCAGCAAGCAGCACGAAGATCAGCTACCAAGTTAGCGGAAGTCCA----Aagtggaggaatacattaggactcgtgaacatagg---ttctagaccagctctaccacaaacATTTTCTTAAATAAAGGCTCAAGAGATTGACTTTG-GGGATCAGGTGTGGT-CTAAGGTATTTCTTTGTCC-TTTAGAAGCCAACACTCTTTCAGACAGCATGGACAAGTAC---GATCTTTTT------CAATTTTTGGTAGGGCTTGACAGCCATTACTCAGGCATTA--CCTACAACC-------ATCGTGAATCATGCTC--------ATCGTGTCTATTACACACCGAATGTTGCGTGGTTTGCTCTGAC--ACCACCACCGTGCACACGG-GCAGCGTGATCACATCCCACTGTTCATCCCAACAAGGTCCTTAAGTGGGCAATAAAACCATATTTGGGGTACAGCCTGCACAGAGGTAAAAA-----------TCATCAAGAAAAGCTTTGAATGTGTCCTgtaaaatgtgacaatttgcattggatttcccagccattagaatgaattagccagttctgctgTAACACGGCTTCATTTAGCTAATAAGAATCAGCAGGCTGGTCTCACTTGACAATTGTAACCTCTGAAAGTGATCCATTTAGACATCCCAATCTGTTCCATGACAAC--GCTGGGAAGCCACAGCTGTGCAGATTATGAGGTCAGCAGCTGACTAACAACTCAAGGGCCAACAGTGGGGCCAACAGTTTGTTGTTTATGTGAAAAATATGTGCGGGAAGGAGAACAGGGCTTTCTCTGCAGTAGCTTTGGTTGTAGATGAT-GTTTTTACTAACCACATCTTTTCACTGTTGACTGGATGACTGCGTCACCCTGA---CTAGAGTCTTTAGAGACTTCCTCTGGTGCGTCATTGGCCCCAAT----CCTAGCTCGCTGA-CTCCTAGGCGAGGC------------------ACGTGCTCGGAGCTCCACTGGCCA---------GAGC-------------AGAATGGCAGAAGAACAGGAGCTAATATGTAACACCTTCCAAATCAGAATCGGACGCTCCAAGCTGCCAGAAGACTTGG-AATGATGTCCGGGATGCATCCATGTGTTTGAAGGAACCGTCAAACTACTACGATCCATGATGAAAGGAAAGAAGAGGCCACGTACTCGTTGTTGGCCAG--TCAAGACCTGCCTCGCCTGGTCATCCCTATCTCTTTTATTAGCTCTGTCCCCATGTCTTTTGATCTCAGCTTTCTTTGTTAAGGC--ATTGCTGCTTC-TCTGCTCGTTCGT---GTTTGATTTGGGAGGGTTGAGCACAAATGTAGTACACACGTC-TCCGTGGCTTTGTTCCACCTCAGTAATCAGTGCCTCTCTCTTCCTAGATCGAGAGCCTGGATTTGTC-------TGTTAAGACTTATCTGG-TCCAATTCATCAACCTTCATCTTAATTTCAAATT---CTTTTCAGTTGAATCATCTCTACTTTTTTTTTTCCATTAAAAATAATACACCCTTGGATTTTGTTTCCTGTATCAGAACATCTTTTAGAATCTTTTGCTTGGGTGAAGAACACCAGATAAATTTAACTAATCCCTGTCTGG-CAGCTATACTGCTGTTAAAGAAAACCCACGAGTG
s HiC_scaffold_1 140245866 1634 + 233722169 GAAAGGGACC-----ACCACCTTTACTAAGGATTCTAAACCACCGTAAGAAGCAGCTGGTCCAGGTCTCGGCTTAGAGTAGGGCCACTCAAGGTGGGTGAGCATTTTAGGACAGTTGGAAATGGGATTTTATAGTTTAATGCCATAGCGAAGGC------AAATGGGGG-TCAAGAGGGTACCTTTTTAGGGTCAGGCATTGTTCTCAGACTGTTCCTCACCCATTTAGGATCCTAGATTCTTTTAGGAAATAAGAAGGAACACAGAGTTCTTTCTGCCAGGCTGTTGGTGGCAGGGCCTGACCAC-ATTACACATAGTTGAGTCCTTCAACCTCAGCATCCCACAAATCAAGACCTAGTTTAAATCGTGTGTGTATCAGATCA------------CCCACTCTAACTTATCACCAAGAGTCACCTGGTGGAAAGAGGGTGCATTCCACTGACTGGTGCAGAAAGTTGCTACTTTGGATGATAAAAGCTTGTATGTGGTGGAGTtcacaaattgaaaaaaaagaatcaggactAGGAAAGATAAAGCCTGTATGTGCTCCTTGCAATGTGACGATTTGCACCGGATTTCCCAGTCATTAGAGAGAATTAGCCAGTTCTGAGGTAACAAGGCTTAATTTAACTAATAAGAGTCAGCACACTGGTCTCAATTGACAACTGTAACCTCTGAAAGTGATCAATTAAGACATCACAATCTGTTTCATGACAACATATTGGGATGCGGCAGCTGTGCAGATTATGAGGTCAGCAGCTGACTAACAACTTCAGGGCAAACGCTGGG---AACAGTCTCTTGTTTATGTGACAAATATGT----AATGCAGAAGCATGCTATAACTGTGACAGCTTTGGGGGTAGTTGGCAATCTTAATTTGccccctttttcttttgttctctcgTAGACCGTGCTGTCGTGAAGGCTGGTGTCTCAGAAGACTTCTTAT-TTGTATATCTGGTCACAACGCTGCCTGGCTATCTGAGTTCCTAAGTGAGACCCCAGGGGATGTGGCTGAATGTGACCACTGCTCAATTTGTCACCTAGCTATGGGCACCATCTTTTAAAAGTATGGCAG-AGCACAAGGCCCAATGAATGAAAGATTGCTAATCATAATCGAAAGTTTCAGTTCAC--GAAGAGTGGGCGAAGGCTCCAGGGATGTATACGTACGTTTGAAGGCATCTTCAAACTTC-ATAAGCCacgataaaatgaaagaaatagccAGGCATAAATGGATGGCCTGACCCAAGAGCTGCCTTATCTAGCTATCC--------TTTATTG---------TTATACGTTTTGATCTCAACTTTCTTTGTTAAAATAGACTGCTGTTTCTTCAATTCATTTATACGATTCGATTT-GGAGGCTTGCTTGAATTATTATTCCATATTTCTTCCCAGGCTTAGATCTGCCTCAGTAAGCAGTTACTCTCTTTTTC-----CAAAGAACTGGATTCTCCAAACTTTTGTGAAGATTTATCTGATTCTGATTTATCAAGCCCta-cttaattttgaattttcctttttggttgaattgtctc-----ttttttctgctttcaaaaCA-------CTTTGGTTGGGCT-------TAGGCATgtctacaaaga-----------aagaaagaaaactacaaatattCAACCAA--CCTATCTGGACAGCTATGTCCCTGTTAAAGAATGCCTACAAATG

a score=67409
s chr3           153419979 2319 + 160039680 CAGCATGTGTATTTCCGGTTTCCTTCCTGTATTAAAAGCATGTGTATGTGACAGGCACAAAACTGGGTT--GCTTTTTAAAA-GCAGAAGACTGCAAGCACAGGCGAAGAAATTCCCTGAGAA----GGCCCCAGGCTCTAGAA-----AGGTGAGAGGGAGGCATGGCATGCGTGTTCTTCTATCTCT--GTGAGTTCAGGGTGCTGTAATAAG------CAGCCTTGGCTCCCTGAGTTTATACAATGTGCATCGAGTATGGAGACTTGAGACGTCACTTTACCAATGCATTTCCAAGTGGATCCTCGCTTGGTTAAAATggaagcggaggggaagggaaggaagg---gaagaagagaggtgacagaagt--------aagaaagggaaaacaggaagaaatggagagaagtaagggagggaggggttagggacggagagagggaagaagggaagCTAATAGGTCACTTGCCCTTACTGGCATTTTACCTGTAAAGAGCAGCTTTTCTCTTTCAGTTAACCCTTCCACTTCCCTGCTCCTGCCTGCCTACACCAAACCTTACATGAGTGTGCACACACAGGACATACCTGCTGTCTTCACCCAGGTGGGTGGGCTAGCTCACTTCACATGAGTGTGCACACACAGGACACACCTGATGTCTTCACCCAGGTGGGTGGGCTAGCTCATTTCACATGAGTATGCACACACAGGACACCCCTGCTGTCTTCACCCAGGTGGGTGGGCTAGCTCACTTCACATGAGTGTGCACACACAGGACATACCTGCTGTCTTCACCCAGGTGAGTGGGCTAGCTCACTTCACATGAGTGTGCACACACAGGACACCCCTGCTGTCTTCATCCAGGTGGGTGGGCTAGCTCACTGTAGGCTATCTCACTTTTCTAGGTTTCCTTTCATCCTCCTCACCAACCCTTCTGG---AAAGTTCCATCACT----CTTCTCCCAGTGTGAGCTGGGCGGATTGCTCTACCCTTTTTGAATGATAGATTGGGACAACTGCCAGCCCTTTTACATTTTAATCAGTATGAAGAATGAAATACTTAACCTTTACTCTTTTCCC-TCCGAACAAGCTTACAGACA------------ATTAAAATCTGTGAAATAAAACCTACAAACCAGTGTGGTTTCCCCAGCAAAAAGGAATAGTCATGGATGAAAGGTCACCTGTCAGCGACTTCCAGTCATTAAATCTCTGCATACATCACTAACATCGCTCAGTGGAAAACAAAGGTCAAAACATTAAATTATGAAACAGTCAGGATTAGAAAAGGTCACCAAGGAACTAAAGGAAATTTGACCAATGCTGTGAACGCCGGGGCCTAGCAGCAGGCAGAGAT-GGTAGGGAAGAGACTCGG----AGAGAACTCTCACCCCGCTCTCTACCTCAGCCCCGTGCTGGATAGGAATTTCCATTT-ACAGCTTGGAACCTGAAAGGAAACTTGTCCACATCAAATAAAAACAGGAGCTTCGATAAATATTTCAGGACAAAGAACAAAAAAACCAAAAGCCCTTCATGCTTGAATCTAACCAGCAGCCTAAATTATTAAAAGCACTGCTTTGCACAACCCTAATAGTTGCTT-CATTTCAGCTGAAGCAACGTGATATTAAGATGGGGAGACAGGGCCCT-ACTGCACCTTCAGTGTCTTCCAGGACAATTAGGGACCAGATGACTGCTAATTTACTACTTTAATGTTGAGACAAATGAGACCTTTGCT-TTCATCAACCAATTTGAATGAATCAGAACAAAGCACGTAGGACAA-GCCCTGGGGACAATCTCT-CTTTCTGCTGTCATTTACGGCTTC-----------ACATCTCTAGAGTTTTAGTCTTAGAAGCCACACCACACACAAATAATGACGCCATCAGGGAATAGATTCTGCCTTTCCCCTCCTCCGTGTTCTTT-AAGGCCCTTCAAG-GGAGGGTACAAGAGACGCATTAACAAGCTGGCATTGTTTTCATTGCTTGACAAACTAAAAAAATGTATTTTAATTCTTCTTCCCTTGTTTCAGGAGTGATTAAGCAAGCTGTTTCCATCTTCTTTGAGTAACCT---------------CAGTGTGCCAAGAACTGAGAAGATTGTTCTAGGGAGAAATCCGCTCAGCCAAGCCAGGC-TGCCAGGCTCGGTTCCTC---GTCCCTCCTCAAAGCTGCACCATACAGCTCCTGCAGCTTCCAG-AGCTGTGGGTTTAAATCACCCGTGACGAGGAACAGCACATAAAGATACAGATTTGATAACCCGCTGTTTGGCTCCAACTCTCTCTGGATTTGGGATGTGGCATTTGCTTTGGTTTCTACCTGGTGGCATTATATCGAGACATAAAACTTAATATGGGGCTGCATAAAACTGTTAAT
s HiC_scaffold_1 140247993 2106 + 233722169 Caccatatgtatttttatttgtatttc---attataaGCATGAATTTTTGGCACA---AAAAATGAATTCTGCTTTTTAACATGCAAAAG----CAAGCACTGAGGGATTAATCCCCTGTGAATGAAGGCCCTCTGCTCCCTGATCCTCCAGTGGGAAGAAAGGTGGATAGGTACCTTCTCTTATCTCTTAGTAAGAGCCTGTGGCTTTCCTATGATTTGTTagctttattttcttgtgtttaaacAATATGTTTTATGTATGCAGACTCTGCAAATCAATTTAGGAGGATATTACCAACTG-ATCCTTTcctgg---aaagggaaaggaagggaagggacaagaaaacaagaggaagaaagataAGGGAAGAGGAGGGCAAAGAAGGGGagtggagggaaggagagagagaaagaaaagaagtgagag---agaacatagagagagagagagaaa---tgatatGTCATATACCCT------------GCTTATCAAG------TTTCACCTCCCACtca--cttttcactttt-----------------------atttaatatGTATATAGTTAAATAAT-CATCACTG-TGTCTTc-------------------------taaattaaacacacacacaca---------------------------------------------cacacacacacacacacaca------------------cacaca---------------------------------cacacac--------cctgctaTTTTCCATTAACTGA-TGGGACAGGTCACTCTCCA-----------------------------------------------GGGCTAG------------------------------TCTTTTTCCTGTGCCTTACCAATCAACCTGGGCTaatgccccacccccaccccttctTGAGGTCTGAGCCTGACAAATTGCCCTGCTTTTTTTGAGTGATGTATTGGGAAAACTCCCAAGCACTTTACATTTTAAGCAATAAGAAGAATGAAATGTTTaaccttcatttttttcctgtatgaaTAAGCTAATAGACAGTAGAATATACAATTAAAATCTGtgaaataaaacttacaaaatagCATCGTTTCTCCAGCAAATAGTATTGGCCATGTACAAAAGGTCACCTGTCAACTAGTTCTAGTTATTAAATTTCTGCATTTATCATCAAGGTGGCTCCATGGAAAACGAAGGTCAAAGCATTAAATTATGAA-CAGTCAGGATTAAAAAAGGTCaccaaaaatctaaa----atttagcCAAACCTCTTAATTCTGTATTCTAGAAGCATGCAGGAATAGGCAAAGATGGGACACGATAGCAGACAGCACTAATCTCTCTCCCCACCTCAGTCCCATACTGAGAATGAATTTCCATTTGatgtctcaaaatctaaaatgaaactTGCTCATCTCAAACAAAAACGGGagcttcaataaatatttcagaacaaAAG--------------------TCATGTTTGAATCGAACCGGc---ctaaattattaaaaacattgtTTTACACTACACTAATGCTTGCTTTCATTTCCACCataaaaatgcaatttaagaAATGGGCTATGGGACACTCAAGGTTCCTTAAATGCCTCGCAGGACAATTAGCAGCTCACAGCTCACTAATTTACTACTTTAATGTTGAAACAAATGAGATCTTTGCTATTCATCATCCAATTTGAATGAATCTGAACAAAGCAGGTTGAACAAAGCTCCAGGGACACACTCTTCAGTTTGCTGTCATTtactcctctcctcttcctgaaTGTCTTTAGAGTTTTAGTTGTAGAGGCTTCA----ACATGTATAATGATGCCATTGGGGAATAGATTTTGCCTTTAGTCTCCTTGATGTTCTTTTGAGGTCTTTCAAGTGAAAGGTACAAAAGACGCATTAACAATCTGGCATTGTTTTTATTgcttgacaaa-gaaaaaaatgtattttaatttttc---ccgTGTTTCAGGAATGATTAAGCAAGCTGTTCTCATGCACACTGAGTCACTTTCAGCAGACCTCTGGCTGTGAGCAAAGGATTCTGAACACTGTTCCAGAGAGAAATCCACACAGTCCAGCCAAGCCTGCTTGTCCATGTTCCTCTTTGCCCTTTTACAAACCAGCATCTTCCATTTAATGTAGCTTTCAACAGCGGTATGTATAAATCACACACTACGAATAACAGCACATAAAAACACAGATTTGATAACTTGCTATTTGGCTCTGATTCTCTGTGGATTTGGGAGATAGCATTTACTTTGGTTTCTACCTGGTGGCATTCTATCTGAACATAAAACTTAATATGAGGTTGTGTaaaaatgttaat

a score=22933
s chr3           153423683 1084 + 160039680 GTGCTTCTTAAGCAAAAAC-TTTAATGTCTATGCCCAGGCTATCTGCATGCTGAAA------------ATGAGAAGATTCTCATGATCTGTACTAT-CAGA-TGAGTGAAAGCCCTGTGAGTTTTAAGAACTAGA-ACTAAGATTTAGATATAATATTTAT-CTGGCTTTGGAGTCCCCAGCTCCTTTACTGGTGTGGTAATTATAGTTTGAAATCCTTATCTTGTTTGAATAATTATTTTAAAACTATGTTAAATCTTCTCCTAGATATCATGGGTTACTGACCCAGTAAATGAAATTACCGAGCCCACAGTATTTTTAATGCTTTAATGAAGTGGTGTTCTAAAATGCGCAGTCTCTGTGACCATGAAAAGCATATCAATTAGCTAAAACTGAATATTG-----------------------CCAGAAACTAGACAAACTGGAGATTCTACTCAGAGTTTAGAAGACCCAAAATGAAATTA----AAAGCTGGTTATGCACAGGGCAATTGAACTCATACACTG---TGCATACT--------------CTCAGCCTTGAGAGC-AGTTACAG----GGCACTTCCATCCTTTGCCTGAGACACATACATCCCAATGCTTCCCACTG------------------------------TTCCCTG------TGGAGGCT---------AAGGCTGAGTCACCCACCACTGACCATTTAACCCTTACTGTTTGCTTCATCTCCTGG----------CAGAGGTAAAGGG--GCAGGAAAGCTATGACTCTGCACCCACAGATCAGACTTAGGGA-------------GCAAACT--CCTC----CTTTATCATGTATCTATTCCAAC-CA---CAGCCATCTCCCACTAAGCAGTGGGGAAGCAGTCATCAG-AAGTC-----------CTTCCATTTAACATCCATGTTAGGAGGATTCAGTTCCTAACCCTGTGGGACACATTCCAACCACACCAGGGGCTTTCTTGGATCTGATCTCCAAAACTCTTGGGAACTCAAAGTTACTCATGAGTGTCATGTGATGATTCTGAT---GAGCAATGGGGGCATTAATTAAAGAACTGAA--TGCAAGGC-----------GAGTGCTGAGGAGCTGGGAATTGGCAATTCGTGAGCCAATACCATTACATCCTAAAGCAAAAGTGGGCTCCACAGAGCTAGGCAGATAGGGTGGCTTTATAGACA-GAAAAGGCTAATGAAGGCAGAAACA
s HiC_scaffold_1 140255864 1183 + 233722169 GTGGCTTTTAAGCAAAAAAACTTCATGTCTATGCCCAGACTAGATGCTTGCTGTAGTTTATTTCAGGTCTGAG----TTGTTGTGATCTTTGTTATTCAGAGTGCTTAAAATCTTTGTG-TTGTTAAGAATCAGATATTAAGatttaaatataacatttattCTTGCTTTGGAGTCTCCTATTCTTGTGCTGCTATGATAATTATAGTTTGAAACCCCTTTcttatttgaataattatttttaaactactttAAATCTTCTTCTAGATATCATGGGTTATTGACCCAGTAAATAAAATTACAGAGCCCACAGTATTTTAAATGCTGTAATGAAGTAGCATTCTAAACTGCTCAGTCTTTGTGACTATGTAAAGCATAGCAATTAGCTAAAACTGAAAATTACCACCCTTCTGTTACCCTGAACTCCAGCAGCTAGAGAATCTACTAACTCCACTCAGAGTTTAGa----tcaaaaagcaaataatacaCAAATGATTATTCACAAGTTGAATGAAGCAAAATGCTGGGTTGAATACTGTGATGGTGATGGCCACAGTATTAAGAGCAAGTTTCAGTCTTGGGAGAGTCTTAGTCCGTTTGCAGCTGCTATATCAGAATGCCTGAAGCTGAGTAATgtagtaaaaagaaacagaaatttattccttACAGTGCTGGAGAGTGGACAGCTGAAGGCTGAGGGCCTCACATCTGGTGAT-------GGCCTACTTCCTACTTCTCCAGAGCCAAAAGATCAAAGACAGAGGGCACCAGAGTTGATGTGA----GTACACAGAAgtcagagatagagacagagacagagacacagactggCCTCAGTGTTCTCTCAGGTACCCAGCGCAGCGCAGACCAGCCAAACCCCACAATATAAT--AGCATCATTCACTAGCAAGACACACCTGATCACCACCCCGCAACACCACTGCCTGGAGGTTTAACTTTCCAACCCCGAGAGACGCATT-CAACTAA---------------------GTTCTCCAGAGTTTGT-GGAACTTGAATTT----ATGACT---ATGTGATAGTTTTGACAAAGAGCTATGACAG----AATCAAAGAACAAAAAGTTCAACACACTTGGTTTCAAAGTTCTAACTGGCTTTG-ATTAGCAATTCATGA--------------ATCTGCAAAACGACGGATGTTCCAGTGAGCTAAGT-----GGTAGATTTTCTGGGCAGGAAAAGgctgatgaaagaaaaaaca

a score=51238
s chr3           153429139 1509 + 160039680 CACCTCTC-----AGTTGTAAGGTATTGATCAATAATGAACTGCACTATT-ATGAACATAAGCACTCATA-ACGT-TTTTATAAGGGCAAATGGGGCCTCTCCGTCTCCAGCAC------------GGGGTATCAACACGGTGAACTAAATTGCTCCGTTTCAGGTTCAGCTCTCAGTTATTTTTCTTAGGAAATGTTAGCAATAAAGCCAAATGTGTCTGGGAACACATCATGCGCTTGATACCTTCATTTGTCTTTCTGGCATAAGTCTACTTCATGGGAAGATGCTGCTCAGGAAAACGTCAAGGGG-GAGACATCAGGGGCTGCTTTGGG-TACACAGAGC------------------AGGATAATGAATGTAGAGGAGGAATTGCGAATCAAGTTTTTCTCCCAACTCATGGCGAGAATCATGCCTCAGATCTAACCCTCCCACTCCACTCCCCGACAGAAG-ACACACCAAGAAAACACTGGGAACACAGTTCTCAAGTCTGACCGACAAGCTTCAAAAGACAGTTGGGGACAGTCTACCAGTGGTGACCTGTCTCGTCTCCATG-CAA--GGCACTTCTAGGTTGTTCCGCAACACAG-------CATTTGGTATCTTCCAAA-AGATAAACTATTCTAA-AATATTTCAGAGGAAGCTAACTTCAGGATGGAAT-CTTGGTTGGATGTTAG---------------------------------TTGGTCTTATTTT--------AAGACTATGAGCGTCCCCTTCGGA----------GACCACCCATAGCGGTGGGGTGTGTAATGAACG--GGAGAAAACGACTTGAGGACCAGGCTCCTTCTCTGGAAGAAGTTCTAGCATGTCCACATTAATAATGGGCTGACAGCTAGACGTCAGGACAGCG----------------CAGGCCTTGTGGTGCTGCCTCGG------------------CCAGCTGCAGGTTAAATGCAGTGTGGCCAACAGCTCCCCGAGCTGAGTTCAGCCTCTGATTTCTCACCAGCTGACACGTGCTCTCGGTTTCTGGGCTGCAGCATCAGGTCAGTCAACAAAAACATACTGGATAA--TGAATGACACTGTCACCAAACCCCAAGTTCCAACTCCCAGGCT--GAATTCTAACCTCTAATTTACTCCCATCCCCAGCTGGTCAGGCCCATTATTTAATGAAGTCTCTCTTGGTTGTCTGTCTATCAAATTATTTGTATTCATGAAGAGAAAGCGATAAGCCAAAATGCTAATTATCTATTTTTTCTAAAATAAAAGGTCCATGCTAAGAATGATAATGAGTTATTAAAATAGCCCTTTTCATCTGACAGAATACATCTTAACAGGCTCTCCAA--CTGGGAGATTTTCATTGCTGGACAACTTAGCAAATAAAGAGGGAGATGTTTACTTTCCAACTTTTCAGACTTCACCAGCATTGGACATTAGC-TTTGAGATGTGAATGCTAATGGGAATAATGAGATGAGTTGGGAGAA-----------AGAAAAGGATACCATG------CTTACTGCACAATTGGTTAAT-TCAGC-TTCTTGCAAGTATGTGAGTCTGAAATTGCTgttatcacctggga-tggttctaccccctaggaaacactgaacaatgtctgcagactttt
s HiC_scaffold_1 140258929 1654 + 233722169 CACCTATCTGAGGAGTTACTAAGGATTTATCAGTAACAAATTGTGTGACTCATAAATagaagcacacatacacacatttcaCAAAGGGAAATACGGCCGTTTTATTTCCTGCATTGTATCATAAGAGGGCTTTCTGTAGCACACATAAAATCATCCTGTTTTGATTTTAgctctgtgttatttttcttagAAGATGCTAGTAATAAAGTTAAATGTGTCTCAGAACACATCGTATACTTGATACTTT--------TTCTTCACACAAGTCAGCTTGGTAGAAAAATGCTACTTAG-AAAACATCAGGAGGTAAAATGTCAGAAGCAGCTTAAGGATACACAGAGCTAAGGCATCTGTGTGAGTCGGATAATGAATGTGGGGCGTGAATTGTGAATAAAATCCTTCCTCCAACTCATGatggaaataatttctcagatctAAGTTCTCC----CACTGCCCCACAGAGGGAAATCCTCAGCAAAAGCCATGATCT--GTTTTTAACAATGCTCTGCAAACTTCAAAAGGCAGCTGAG---ATTCCAGTAATGGTTACCTGTCTCCTCTGTGTGACAATTGACAGTTCCAAATTGCTACCCAA-ACAGGGAGATGCATGTTgtttttgagaaacaaaaagattaccgtaagaattttaaaaaggaaactaatTTCGAAATAGATTTCTTGGCTGGGTGTGAGGAAGACtgttctcaaaatataaaatgttatttgtgggccttttttttttaaaaaaaaaaaaagagggtttGTTACGGATATTACAGATAACTACAGATGGCAGTGAAGTGTATAATGTATGTGGAGGGGAATGGTTCCAGGCTGATAGTTTTCCCCTGGAAAACTTTCCTATTCTTTCACATTAATAATGGGCCATTATCTAGAAATTGAAGCAGCGAAGTCCAAACACCACACGGGCCTTGTGGTTATGCTTTGAATGTGTGTTTACAATTATCCAGCTGCAAGTTAAATGCAGTATAGCCTATGGCTTCCCAAGCTGAGTTTTGACTTTGATTTCTGGTCAATTGACTTGTGCTCT-GGTTTTT-GACTGCAACATTAAGTCAATCAACAAAAATATCCAAGATGAATGGGATGACATTGCCACCAGACCCTGAGTTCCAATTCTTAGGCTTGGAAGTCTAACCTCTAATTTCCTCCAGCCTCAAGCTGATTAGA-CCATTATTTAATGAAGTCTCCCTTGGTTGTCTGTCtatcaaattatttatattcATGGAGAGAAAGTGATAAGCCAAAATGCTAATTatcca-tttttctaaaataagagGCCCATGCTAAGAATAACAATGAGTTATTAAAAGAGCACTTTTCACCTACCACAGCACATCTTAACAAGCTCTTTAAATCCAAGGAGTTTTCATTGCTGGACATCTTAGTTAATAAAATGGaagatgtttattttctattcatttagaATTAACTATCATTGGGCACCAGTGTTTTGAATTTGAATGCTATTGGAAGTaatgagaaaggaggaggaaactCCATTCTTTAGAAAGTGATTTAAGGAAAAATCCTTTTACTTTATTGGTTTTTGTCATCATTTGTCCAAGGACCTAGATCTAAAACAGATCCTGTCACCTGGCAGTGATTTTGTCTCAGAGGGGACATTTGGTGGTGTCTGCAGACTTTT

a score=29310
s chr3           153432443 977 + 160039680 GTTTGGCTTCTTCGACA------AGAGAATGAGGC-AAAAGAAACGGGTTTATTTTCTAGGCAAGTTTTTGTTTCCTTGGCACACGGAGCCCTGGCACTGAGGCGCTGTAAGGCACACAATCATTTTGAGTTGGCAAAGCCCTCTCAGCCTTTCAGGTCTCAGCAGCCTGGCTCCTCTGAGCTCTGACAAAGCCACCAACAGTTAGTCTTA----GGAGCCAAGAGCCCTTGAGAGGCAGCCATCTTCTCTGCAGAGA--TTCTTTTGTGCTCTATTGCTTATTACTAAAAGCTGGATAACTGGGGCAGAGGTCACAGAGACCATTAGCCAAGCTTGGGAATCGAAAAGGATCCTA--TGAGAAAAGCATTTAGTCACCAATAGCATATCAATGGTGTAGAGG-------GGTCAACCATCTCTATTAGCTAATGTCAAGGTCACTCTCACTGGATCAATACCTTTTATTTCTAAAGTTATCTTGAAGAGAAAAGATAATAATAGCTTCAAAA-----TTTATGGAATCATGCACGTTTATTTATGTGGAGCAGTGTGTGTATCCAAAGCCCATGTATACTC--AAGAAGTATGCATTGGAATGAAAGTTGGCTCTACCAAAGC------AAACACATAAATAAAAG-ACCATAGAACCACCATAAATCACAAATTGTTCCTATAAATAAGAGAGCTCAGGGGAATCTATCAAAGCCCCTTAAAATAAGAATCATATGC--ATAACTGAGTTTGTGTTGAGGGAATGGGGTTACAGGTCACTGAGCTACACTGATGCAGAACGCTAGCAGATTATTCATGGTGGGGAAAGCAACTACCCAGCTGGGTTAAATCACTCGGTGTTAGGAGAAATTAAGTTACGTGCATTCTTAATAAACGGAACAGAGAGCTAAGGCTGAGTGTGCAAATGCCGCAGAAGCAGAGAAGTAAATCAAATGCACAAAGCAAATGCA-CGGAGCCGGCTGGCAGTTGGGCCCTTCGCCTTAG-----CTCCCCAAA
s HiC_scaffold_1 140261595 975 + 233722169 GTTTAGCTTTTTCAACTCTTTCTGGAGGACAAGTCCAAGAGAAAACAGTTTATTTCCTACATAGGTTTCTGTTTCCTTGGCACACAAACTCCTGGCACTGGAGATCTGTGAGGTACACAATGGTTTGGGGTTGGCAAG---CTCTCAGCATTTCAGTTCCCAACAGCCAGTCTCCTCTGAATCCTGCCAAAGGCACC--CAGCAATGCTTACTGTGGAGCCAAGAGCCCTTGGGAGGGAACCATCTTCCGTGCAAAAAACTCAATATAGGCTCCATTAGCTA-----ACAAGCTGAATACCAGTAGAAGAGTTTGGAATAAACTGTAGCTATGCTTTGGAATTTGAAC-GATCCTAGTCTTTACAGGATTTTTGTAGTCAATATCATATCAGTGATGTAATGTCACAGCCAGGCAGCCATCTCTACTGGTTCATAT--------CTATCATTGGATCAATA---TGTCTTTCAAAAGTAAATTTGAAGATTAAAGTTAATAATATCTATAGAAAAGGGTAGAAAGGATTATGAACATTAATTTACATGGATTGATTT-----TCGAAAATCGatgtaaaaccaaaaaaaaaatttgtgagaATATGCAGtagtttcaggaaaataaaacaaaacacacaaagaatAGCACCAGCTAAccaacataaataataaatcatttctataaataaatGAGC-CAGGGAAATCTTTCAAAACCCATTTAAACAAGAATCATATACATATAACCAAGTTTGTGTGTAAGG--TTGCATTGAAGgtcaataaaatacaataataggAAGTGGTAGCAGATTATTCACAG-GTAGGAAGCAAATATCCAGCTGCTTTAAATTTCTGGCTATTATGAAAAATTAAGTtatgtacatttttaataaatggtccCCATAAC----------TGTATAAATGCTGTAGAAGCAAAATACTAAATC--ATCcagaaaataaatgcatttgagATATTTGGCACTAGG---CCTTGCTTTGGGTGGTTTCCCCAGa

a score=34600
s chr3           153434594 2514 + 160039680 CTTGTCTGTCAGTCTCCCACCAAACCCCATACTTCTGGTAACAAAAACACACAT-GTAACAGCACCCAGGACCCAGCAGGCATTCAG------TCAGCATTCTGAAATTCATAATGTCC--------AGCTAGATGCACCGTGCCAACAACACAGGTTAAAGGCTCAGACGTGTTTACCAACAGTGTGGTTTCTGCAT-GTCACCCA----CAGTGCTAAGTCGGG-CCCACTTCATTTGCACAGCATGTGATATTTTTCAGAGCATATGTCTTACAG---TCTAAGTGCACTGACTTGTGAGGCATCTTCAGAA---TGCAGAGCCCTTGGGTCAC------GCAGATTT-CCAACTTTCTACTGAGCTAAGAGTCAGGCATCAAACATACTCTGCGTACTCAGCTCCCAGGCCACACAAACATATGTCGAATATAGATGCAAGTAGATCTACCCACATTTAAAAACACACCTAGCCAGAGATTCCTACCAGGAATCT--------ACAGACAGTCTGCCACTGAGTATGTAAGGGCTTAGCCCCTGACACCCTTCCC--------------------------------------------------------------ATCCTGGA---------------------------------------------------------------CTTTTCAAAAACTGCTTTTGTAACCTGCATTTTACTTTAACA-TCCAAGAGGGCTAATATGAAATTTCAGATAAAGAACCGTATTGAGTCAGGAGGATTCAATCTATAACAGGCTCGGATTTGTAATG---------------------------------------------------------------------------------------------------------------------------AAAAAGGCTATGACAGCTGCCGAGGAGAGGCTCGTGGGGTTTTCCTTATTTAAGCCGATTCCTTCAAATGGGCACCGTGAAAAGGAGA-GATGGGTCTGAAGACCGAATATATAAGATGAGGATAGAATTAGATTGTCCATTTACTGACAAAATTGCAGAATTGTTTTTCATGTGAGTGTTTAATAGAGAAATGGAAAGGGGAGATTT---AAGTACTATTAGAAAGATGCCTAAAATGTAACTTTATACTGAAACTTTAATCTTGATAACAATTATGGGTATgtgttgtagcacaacctgtaagagaagcacttagaaaactgaggtcagatgactgactgcttcaagcacaaggctagcctgggatcagatgactgcttcaagtgtaaggctagcctgggATCAGATGACTGACTGCTTCACGCACAAAGCTAGCCTGGGATCGGATGATGGTTTCAAGTGAAAGGCTAGCCTGGGATCGGATGATGACTTCAGGTATAAGGGGTGAGATGAGATTCTGTCTCAGAGCCAAACACTGATAATTGATTAAAGTGATCAAATGGTGTTTTTATAAACACAAAGAAACTCTAGCATCCCACACGATGTCTGACATCTGACCAACAGTTACTAAACATTTGAACAGTCACCAACGCCATGGTGCTAAACACCAAGCAAATGTGTCCGTGAACGAGCTCACTATCGTGGGTTGAAGGTTTATTGATATCATTAGTTGATGAAATCTAGACAATTTTTAAAGGATTGGCTGTCAAGCCACGCTTCCCCAGGACTGGGGACTGGATAATCTTAAGCCTGCCATCTTAGCCACTACCAAGGAGGCTCCTTGAACACGCAGGATCATATGGAGGGGAAACGTG------TTTAAAAGGAGGCACAGAAACAGGACTCTGAATAT---AGATGAAGCCCAGCGCTGGGGTGGGAAGCAGGCTTCTCTGAGATCATTCCACCCAGAGCCCAGTGTCATAGG-CATAATGGAGGCTGCTAAGTGTAGGACTGGGGTAGCGGAGGGAATGAGGAGGAGACAGC---CACAAAAAGTGCTGACCCCT-TCTGCAGTGAGAGCTGCGTCCCTCCCCACAGCACGGCCATGGCTGTC---AGCGCCGCTCAGAAATGAGACAGCCCC-GTTTTTCAAAAGAGTAATAATGAAAAAATAAAGTCCCGTGGAGCCAGTCCTCCATCAGCTCTGCTTATAAATTCATAGCGCAGCATGGAGGTTATTAAAATCCCGTATGTGAAAACCACACATGGCACAAAGAGATACGGATTGGTGCTCCGTGGAGATAATGCTATCTAATGGGCAAAACAAGTCATGGGGCCCCGTTTTTATTCAGACTACATTTAAAAGGGGCTCAGCATCCAGTGAGTGAGCAGGA-----TGGCAAACCATACCCTCCCTACC--CCATCTTATGGGTTAATAACTAGGATGT-AAGAGTAGAGCTGTTATCTGCCCAAGTCTGGATATCCCCATGACACTTTTTTTTCCTTGCTTGGAACTACTTAAAATGGAG-GGGCTGTGAGCTTCTGCAGCAGGCTTGACCCAGAGT-GAGGGCAGGGCAGTCCCTCCCTCCCTGCTC----------AACCGGGGACTCTAGGAAGGC----TGAGGTGGTAATTTCTGG------GTCTGCCTGGGACTTAACTGGAGACCCA--------GAGCACCCTGGCCTGTACTTTG---TTGTTGGACTGTTTATCATTTCCTAGGCAAAGACTTTGCCTGTCCAAGGCCCTATTACAGAAAAGCGCAC-----------------------------ATGACTCATAGTAGCCA-------------TGATGTGCTAAGGACAGACTGCAGCTCTCAGATGCTATTGGGAAAAAAATGAAG-------------TAAGAATTTTCTTCGTTCCACAGACCACC---TATCCTTTATCTGAGATTTCCCA
s HiC_scaffold_1 140263233 2581 + 233722169 CTTGTCAGTC--TCTCCCAATAGACCCTAAATTCCTTGCAAGAAGAGAATATTTTGTTCCTCCACT--GAATCAACAACACTATCAAAGTACATCATCAAACTAGAATGTAGAATGCCTGAAAGTAGAGTCTAATGTGCTGTAAATATTGCACTAGCTAAAAGATCGGTTGTGTTTACCAACAGAGTAGTTTTAACACCATCATCTAATATCAGCATTAAACAAGGTCCCAATATCTTTGCATACCATGTGTCAATTTT-GGAGACTAtgccttaaatatttttaagtgaaggGAATTCTGAGAAATTTTCAAGAATATGGAGACCTCTTATGCCATTGTGGTATAGGTTTATCTACTCCTTATGGAACTGAGAAATAG---------------TG-----TTACTGCCTGAGACACACAAA-ATAAGT-GTGTGTTCATGAGAACATGTGTgaacatatttcaaaacataccTAAGGGCAGATTCTCATTCAGGGTCCCCTGCTAAACAAATCATCCTGAAGTAGATACGTAAGGATCTGACCTCTGATCTCTTTCCTGTATTGCAATTTAccaaaagttgtgtttttttgtttttttgtttttttttaacttttttccgatcccggagatcgaactcacaacctcacgcttgctaggcaggcgtttatgctgctgagctaaatccccaacccctacaAAAAGTATTTTCATAGCTTGTATTTTACTTTAACAATGCACGAGGACTAATAGGAAATTTCAGACAAAGGACCGTTTTAAGTTAGAAGGGTCAAATTTGAAACAGACTTAAATTTGtaatataaaacaaatggaaGGGGACCAtagagggaagggagaagaggatAAACAATTCAGATGTGTGGTGTACATATACTGGTTCCCCTGGCCCATCTAGTCATTCTATACTACAAATGTACTAACTAAAAAGGGCTCTGAGAACAGGAGAGTCCAGGGCCACAAGGTTTCTTTTATTTGAGCAGGTTAGTCCAAACTGGGACCATGAAAAAGGGAAGATAGATTTTAAGGCCACAAACAAGGGATAAAAATATGGTGGGATTATCCATCTACatacaagattataaatatatttttagt-tcCTCGTTTAGCTGAGACAAGAAAAAAGgagattttaaaagttgtattagAAAGAAGTACAAGGTAtacttttcaatttcaattttaat---gaTAAGAATAA-----------------ACAGC---------AAGCTTTGATAAACCCATgg--aaattattttgttctt----------------------------------------tgtaaaacTC--------------------CAGCACCCAGTACAATGCT----------------------------GATAGgc-----------------------------------------------------------------ccttaataaatatttg--ttgaataaatgat---------agcaataataataactaCTATTGCATACTGTG--------CTGAATAGC--TTATAGAAAAATCCACCAATTAACAGTCCTGCAGATCTTAAGAGGAAGTTAG------------------CATTGTCAT----------TATAAAGACA-----AGTAGACGAAATCCAAACCATTGCTCCAAGATCAGAGGGCAAACCAG-----------------------------------CAGCCATGTGCAGCACTAGCAAG----TTTCTCGAATGTGCAGGATTTGATGGAAGAGAAATGTGAccacatttaaaagaa------------------tgaaaatgtcagACAAACTACAGAACAGGAGAGCGG-GCTGGCTTCCATGTACCCAGTTCACTGAG-GTACAAAGCCACAGGGTAATGTGGAGGTGGACAAAGACAGG-TTGGGGTGAAAAGGGGAGTGGGGGGAAATCAGGGAGCAAATACAGAGCTTATTCCTCTCCATAGTAAAAG-TATACCTCTCGCCATAGCATTGCCAGGGCTGACTGAAGAGCCTTGCAGAA-TGAGGCAGTCCCTGTTGTTCAAAAgagtaataatgaaaaaataaagtcctGCGGTGCTTTTCCTCTATCAGCTCTGCTTATAAATTCATAGCGCAGCATGGAGGTTATTAAAATCCCATATGTGAGAACCTCACACAGCACAAAGAGATACGAATTGGTGTTCCATGGAGATAATGCTATCTAATGGACAAAACAAGTAGTAGGGTTTCATTTTTATTCGGAGTACATTTGAAAAGGGCTCAGCATCCAGCCACTGAGCAGGGATCTCTGACTGTCCAGAgcatctcctccttccttcctatgGATTAATAAGTGGGACATAAAGAGTGGGGTTGTTATCTGCCCAAGTCTGGATATTCCCAAgatacttttttcttcat--ttgcaaCTATTTAAAATAGAGCAGATTAAAAGCCTCTCAGGCTGCTTTGAC----AGTGGAAAGCAAAGCAAATC--TCCTCCCTGAACCTTTAAAGGGCATCGGGAGCACCAAAGAGGCAGAATAAACTCATGACTTCCGGTCCAGAGTGCACCAGAGATTGACTGGGAGGCACAGGAAGTTGGACCACCATTTCTTTCTGgttggctttgtttgtttgttt---atttgcacAGAAGAGGCTTCTTCTTCTGAGTGTTCTATTAAGGAAATTCAAACTGGTAACATGAAAAGGGAAGACAGATTTGAAGGCCAATAGTAGCAAACGCTATCTTATTTAATCTGCTCAGAATAGACTACAA----AATAGGCTGTTGCTAAAAAGCTACAGGTTTTTTTTAAGCTAAGACTATCC--CATGACTTAGTCTACTGAATATACTATATCTGAAATTTGCTA

a score=33678
s chr3           153454616 2560 + 160039680 GTGGTGATAAAGAAAGGCTTTTGTTTCAAATAGCTGCATGATATTCCGTTATACGGTCAGGTCTTGTTTTACTTAAAATCAATCCTTCCTCTAC-CAGAAAACATGGCCGGAACAAAAATCAGACGTTGTGTTTGCTCTCGATTATTTTCAACATTAACCGATGCTCCAGAGGAGCCAGTGAACACCAGATCCCTTTTTCTTTCTAACCATGACAGGCCCAGCACACCCCATCCAAG---TCTGCAGAGAGATGCCTCAGGGTCCCGGCACTGGGCTCTCGTGAGCCAGCCTTGGATGCTGCAGACAT--CACCGTGTGCTGTGCCATTC-TGCCGGATATGCCGAGTGGATGCCCATTTGTTTGCATGACTCTGGACTGGGGATGTAACGTCACCTGGCTTGTCATTCTTACTTTCTTCCAGTTTTAGGCCTGCAATTTT-CCTTAGC-AAAGTGAGCTTATCTATAATTTCCTTCAGAAAGTTTCTTTCCAGTCTAGAGACACAGTGCCTCTGCATTCTCTGTCAATTTCTTGAATACCCCCTGTTCTCAAGCCACCTCTCTCTTGTCTCCTTCGTGACTTGTCCTCTCAGAAGGAGGAAGTTGTTTTTTCATAACCCCAATTTGACAGACAATTCAGTCAGAACTCTGATTCTTCTTTAGCCAGT------GGAGGGCAGGCATCTAATCTGTCCTGCAGGTGTGTAAGCTTG-------------------AGCCCACAGGTGACAGGGGCACCTAACAGTACACAGACATCCACTAATTCTCCTCTCTCTTCATGGATGACCTCTGGTCAACCCTGTA-------GAATTTACAGTTTAAAGAGAATATCAGCCTGCAATCAATGGAGAGCGCTATGAAAAGCGAGGAAGAGGGGAGAAAACAAAAGCTGCCCACCTTCCAATGCAAAG-ACGAAAACCGAGCAACAACAGAA-GAGTTTCAGATGGCT---CATTTTGTTTCCATTATCTAAGCTCCAACTCAGCTGTTACACTGATCCCTTGGCTTATATCTATAAAAGCACTAATAAAGAAAGGTCACCATACCTCGACACCACACAAAAACCCATCTTCCCAGGTCCAAGATGACAAGCACGATGACCCATCTTCTTAGTGTGGTTCTGGTGAGCAGATTTCACATCCTCCTGCTTGTGGGGCCAGCATCACCAACTGACTCATCTCCTCTTCACATAAGCTTTTAGAAATGTGTCCTCtgtgtacggctgttttgcctacatgtatgtctaagcacatgcgtgcacctcatgcccccagaagccagcagaaagcatctgatccccgtaactggagtcgcacatggatgtgagtggccacgtgggtgctgggaatccaacccgggtcctggagcagaggagccatgctcttacctactgagccacctctccagcccTCACGCAGATAACTTCTAAGCATCTTTCTCAAGTATCTAGCGGGTGTTCTGTGCAATGCGTGTAGTGAACT-GCGTGAATCAGGAACAATGCTTCTTCTTGGAAAGGGTGTCAGTATTGA----------CGTGCTAGAAGCCTGTTTTATTAG----------------GACTGTAGAACGTGAGCAGAAATTAGGCTCTGGGGCTTCTCTTTG-GCTTTCCTTCTGTGCATCGTGTTATACAGTCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTATACAGTCTTTGCAGTCTCCATTACATGCC-GCCTCTGTCTATCCCCAGCCACCCTTACTCTGCAG-ACAGGACTAACTGGAATGTCTGCTCGGTCCCACCAGGTGAAGCAAACCCATCAGTGTGAGCCCCACAAGTGCTTGGTGGAGGATGCCCTCGTGTTTCTGCACGCATTCTTTAACACACCCAAGCATCACATTTATTTTTCCAACAGCTGCTGCATATTGTGCAGACTTCTTAATTAGCTAATGCTCGGCAAGCCCTCTGAAGATAAAAAGCCCAATAGAAGCTCTAAGTGTTATTATTACTCTGACAAAAGAGCTctctctctctctctctctctctctctctctctctctctctccctctccctctccctctccctctccctctccctctccctctccctctccctccccccctctctctGTCTTTTTACCTTGGCTCCCCCAGAAATGTATGAGCCTGATTTCTCTCTAACTAGCAATAATCAGAGGACAGGCTGCATAAATCACA-GAGAAAGAACTGGGGGATTCAGTTCTGGCCCCTGAAC-CAGGTAACTGGGCATCCTGGGT-GTTCCTTCCAGCCCAGATATAATCAT---TATCTGCCCAAAGGAAAAGGGTGCC-AGGTTGGGGGGCAGTCGGAAAGCACAGTCTCGGGCTCTAAGATGCTGTCCTGGGAAGGAAAA----------CACTTGCTTCCCTGCAAGGACTTTCTGAATGTCAAAGCTGTGTTTGTTTCTTAAGGCGGAGTCAGGAGAACAATGCAGGTATTTAGGGATCACAAACGATGTCCTTGGATACAGATGACCATGGCTTCGATATGAAAAATGATGCATCTAAGTCAAACTTACCAGGCAGGTGTCTGTTTCCCTTCTGTATTTCCAAGAGAAAAGACTGGAAGAGAAA
s HiC_scaffold_1 140277064 2077 + 233722169 GTAGTGATAAAG-----CTTCTTGCTTGGATAGCTGCACAGTAATCAATTATATAGTTAAACTTTGATTTGCTTAG--TCAGTCCCTTTTTTccacagaaaaaat--------------------------tttttttccaaatatttcctaTTATAAGCAATGCTCTAGGTGAGCCAGTGATCACT-GATCTAATTTTCTT-CTGAACATG------TCAGTTCACCCCATCCAAGATTTCCCCAAAACCATTGCTT--------GGTTGTGGGCTCCCGGAAACC--CTTTTAGCCTTCCAGCCACTCCACAGTGAGCCACCCCCTGAATTTAGGGGGTGCTGAGTGCACCTATACTAATGACCATGACT--------GTGTTGCTACATCACCTGGCTTCTCCTTGTTGCTTTACTCTATTTTGAGGTCGGTAATTTTTCCTTAGTGAAAGTTAACCTATTTATGAAACCCTCCACACATTTTCTAT--AATCTAGGTGTAttattccttt--attctttctcaaTT----------CCTCTCTCCTTTA-----CTCCCTGCCATCTCTTTACTGCCCTTCCCTCCCCCACGAAGAAA--TAACATTTCCTAAACCCATTTGGACAAGCAGCTCAGCCAAAGGTGTAATTTTCCTCTCTCCAGCACATTGGAAGGATAGTGCTTGAATATGCCTCGCGGGTGCACAGAGTTGTGAGACCAGCATGGCGTGCAGCCTAATGGCTGCAGG--CACTTAGC----CCTTGGCATCCTCTGATGCCTCCCTTTTCTCCTGTCCTCCTTTCTCTCA-CCCTTTACTACTATGGATTTACCCTCTAAACAGAATAGCAGGTATAGCTCAATGAATGCTACTGTGAaaaccaagagagagg----aaaagaaaagttggCTACCTTGCTGTGCTTTTCAGGAAAGCC------CAACAGAAAGCCTTTCCcattgttgtttattttgttttccttaga-aAGCTATCACTCAGCTCTTGCATTGCTAAGTTAGCTCAT------------------------------------------------------------------------------------------------------------------------------------TGCCGCTAAGTGGGCAAG----------------------------------------GAGAAGAGTTGTCTGGATTCAGC--------------ATATGTGTCAACACTGGTG----------------AAAATTAAGGGTAAAG------------GTAAATG----------------------------------------ATACA---------------CAGCAGACCTATAGTCAT-----TTTACCCGACTCTC--------------ATAATGTTTAAATCTATGTGTCCAGTACGTGTAGGTTG-----------------AGTGAATTTGGATAAACAAGTGAAAATGTGTGTTCTTGGATATGGGGTTTTCTTAGAACATCTGCACCATGTCACATGTCTGTTTCATTAATGTAGTGTATGTCTCTGATCATGAAAGTTTAATAAAAAGTAGGTGATGATGCTTCCTTTTGAGTTTTCCTCTTGGG----------------------------------------------------------GTGAATATTCTGTAGCCTTGCACCATTCCATTACACACAAGCCT-----TATCTCTAAGCATTATTACTCTGCACCACATGACTATTTTAGAGG-CTGAGCTATTCCACCAGGTGAAGCAAACAAATTAGACAGAGCTCCACAGCTGCTTGATATGGGTTGTCCTCATGTTTTTGCTCCCATT-TTTAATACACCCAAGCATCgcatttattttttcaacagCTGCTGCACATTGAGCAGACTTCTTAATTAGCTAATGTTTGGAAGGCCCTTTGAAGATAAAAAGCCCTATATAAGTGCTAAGTGTTATTATTACCTTGATGGAAGAGTTCTCTTCTTCT-----------------------------------------------------------------------------------------------------------TTGGCTCACGGAGAAATGTGTGAGCTTTCCTTCTCTCTAACTAGCAGTTCTCTAACTATAGCTTACATAAATCACAGGAAAAAGCACTTGGAAACTCAGCTGTGACTCCTGAATACAGGTGACTGGGCCTCCTGGGGAGCGGCTTCTCTTCCTAATGTAATCTTCGCTAAGCACCCAAA-GAAAAGAATGCTGGGGCTGGAAGGTGGttagaaaacacattttcagCCTCTAGgatgctttaaaaagaaatgaaaatactaataGCACCCTCTTACCTGAAAGAGCTCTTTGGGTGTCAAGCCTATATTTCTTGTTTTAGCTtgattttggaaaacaaaacaaatatctgACAATCATAGATTATGTCCCTGCAAGTAGATAGTTGTGCTCTAGAGATGAAAAATGATTTACCTGAAACAATTTCATCTGTGAGTTGCCGCCTCCTCCTCCCTATTGGCAAGAGGAAAgatgctaagaaaaa

a score=24311
s chr3           153458445 824 + 160039680 GCACGGCGCTTCATCAGCCTGCTCTGCGCATCACCAAAAGCTTTCGCCTCTGCTTCCTGCTGCCAAAGCCCACAAATAG-ACAAGGATATGCTCCGAAGCCTCACATGCCAAGTTAAGAACACATCTACGGGGTCATCCGTGCCTGAGGCTAGGAAGAGAAAAGCGT-GTCTGGTACTCAGTGT--GGGCTTCAGGTCACATCTCTGTGACCGGAGAGTCTGTACTCAAGACCAA------------CTCTAGAA----GGGATGAACCACCTCGCTCCCCTGGAAAAACAGTAGCCAGAGAGG-GAGCTGTTCCTT-aggagagtttgtttgtagctaacaga--ggataaattattcaggagcaacagccttgtgagccctgtaattactgccaagtaactgagactattgacctacAAAATGCAGATCAAAACCCAAATCTGCATTTCAGACAAGATTCCTCTCAGGATCTAGCACACTGTGCTGCCCAAGTGGCTGCTTTGAAAACCAAAACAGGAAGCAGAAAATACTGTCACTCA---AAAGATGTCACT--TAGGGACAAAGAGGAGCTCAGGTGCCAGAGAATAAGAAGCCCTGGGCTCAGCAGCAC-----------------ACCCTCCCCAAGCAGAT----TTACCTGTACCAAAC------------CCAGACTCCAGGGCTCAACTC--------------ACAGCTTTCTGGCCTCCTA---GGGTCGTGCATGTTCCACATCTGCTCTGTAAATCCTGTGGACAAGCTTTCCTTTTTCTAGACCGGCCTCTCCACCACTTCTCCCCAGTCTGTA---TTGTTCCCCCAGTCAATGTCTGCCTCATGCAACTTCCTCAGCGAACTCTT-TCTTTCCAATAAAAATAGAAGCA
s HiC_scaffold_1 140280302 894 + 233722169 GCAGGGCTCTTTCTCAGCCTGCTTTTCCTATC-TTGAAAGCTGTAGTCTCCACTTCCTGGTGCCAAAGATCACTTCCGGCACAAGGAAGCACTCAGCAGACTCATGTGCCAGGATAAAAACACATTT-TGGTGTCCTTCCTAAATGAGGctggaatgaaaacagtattGGTTACTACCCAGTTCTCAGACTGCAAGTGGAATGTCTGTAAGGTAGAAATCTGCACTGAAGATCAATTTTGAACAAATCTCTAGGAACTGGGGACAATTCA--TAGCTCCCCAAGGAAAGCAGGGGCAAGGGAAATGAGAAGCTCAGTGATGAGAGTTTGTTTGTGGCTAATATATTAGATAAATTATTCAACAGCAACATCCTTGGGAGGCCTGTAATTACTGCCAAGCAACTGAGCTTGTTGACCTACAAAATGTAGATCAAAGACTAAATCTGCATTTCAGACAAGATTCCTTCCAGGCTCCAGCAGACTGGGATGCCCAAGTGGCTGCTTTG-AAGCTTGAATAGGAAGCACAAAATATTGTCACTCACTCAGAAATTATAATAGAGGGGAGACAGATTGGTTCAGGTACCAGAGAAAAAGGA-TCTTGGACTCTCCACTGCCCTCAGGTGACATCAGAATCCTCCACAAGCAGACCCAACCACTCTTTCCAAAAGGTCTTCCATTGCCACCTTTTAGGGTTCAGATTTTCTCTAAATGTAAGCACTTGTGAAGCATCTCACACATTGCCTGCATTTCCTGTCTCTCCTCATGAACTcctactgtta----cttttttttctagaat-gccTTTCCACCA-TTACACCCAGCTTCCAGATCTTTCCTTCTAGTCAATGTCTGTCTCATGGAAC-TCCTCAGGGAAGCCTTATTGCTCCAGTTAAAGTTTAAGTA

a score=36980
s chr3           153467357 2529 + 160039680 TAAGCAT-GTTAAAAACAGAGTATTTCACAAACCAACCAGTTTATAATGCCATAA------GGGGTAAGTAACTTTGAAC-TGAACTCTATGGAGAATAATTCCGtaaattaatttttttaatttaaaaaaCATGCGGTATCAAAAGAGAAGCCAA-----GGACTGGGTTTGAAGCAGCAAGGTATTGATGTTTTCTAATGCTGGAAGCTACCA-TTCCCATGACCA-CAGACACACTGCCAAGGATGAGGACAGGAAAGAGATCATGGGGAGGGACTAAAGGACAATGAAAAAGA------GAATTAGACGATTATAGTTATCAACACATATGTCAACAAAGTTGACACAAGAACTATAACCACAAATTAAATTAATGAACCTAATCTTCAAAGAACTGAAGGCAAAATAAATAGCT------CTGTCAATTTCTAGAATGCAGAAAACTGAAAGGATTATGACTGTCATTACTATACAAG--CTCTAGAGCTCATTTATACAGCCACATTCACAGCCTTCAACAATTCTT------AGAAAAGATCGCACTTATATGACCAGGTATGGTTTGTTGTTGTTGTTGTTTTGTTTTTTGTTTGTTTGGTTTTTTGGTGTAGACCTCTGAGCCAT-GCCATTTAGCTCATATAAGCA--GAAGCCATCACAGGAAGCAACACTTGTGGCACTGTAAAAGCAAAACTGTGCACTTTACCCTCAACATGTCCAGCAAGGAATCTAATCTCAGAG----TTCTTAAAGGGACAGGCTGTC------------GTTCCCAGCTCTCCTTAACTCTGTAGTAATCACTAACCATCCATTTTCTGTGGTTTGTTTAACCCATTTGCCAAACACACTCAGCATCTGTTGTTAGAACTGTAAATGGTTGTTTTCAACACCTTTTAATTAT-----TTTTTATCTGTTTAAAGGAATCTTTGCTACCAGTTTCC------TCAGGAAATAACAATCTAGGATAAGGAGCTATAAATGatgttaacttgatacagctggggacatctgggaagagaaacctcaactgagaaaatgccttcatcaaactgacctgtggtcaggcgttagggcattttcttgactaatgatgggtatgtgagaactcagcccgctgccacccttgggcaggtggtctcggactgtaagaaagcaaaatgaacaagccatgaagaacaagccagcaggcatcactcctccacagcctGAGAGTAGTAAAAAGTAAGCCATCTCCCCCGCCCCACCcccttacctctctttgctttgggcgtgatgttttagttcagcaatagaaactaagacaAATGATAATGAATTTCCAGAGTTTTCAAGTGAATTCAAATAGTCTTCCTTAATTTTTATAGAGAGAAAACCGAAAACAGATCTCATTTAAATGCTGTAT-TTTCAAATTGCACTTAGATAAAAATAAAGCCATGACAACCAATAGGGATGAAAAACCCAGGTATCCACAGGTGTGTGAAT-GATAATTTACGATACAAGGAACTGTTGCTAAG--CAGGAAAAGAAAGAATTCTATCC---CATGAGACAATG--TGAACTGAGAGGACTTCATGTCGAATGGAATCTACCCATCCTACC----------------TTACACACTG-ATGCTCCCACGGAGGTGAGGCTGC------TGGCATATGTGAGGGAGGGGAGAGCAGAATGGTAGTTGCTGCAGT----GTGGGAAGTGGAGGAGAGGTGCTATTAAAGGGCTAAGCTGCAGTGTAGAGCACAGGACAGCTCTGCAGGAAGTAACAACAAAGGCAACAGGTGCCCAGCACAGGGCAGCTCTAAAAGACTTAACAATGTGAACAAACCAATGTGAGTGCAGCACAGGACAGCTCTGCAGGCAGTAACACAGTGAACAAAGGCACAGGACAGCTCTGCAGACAGTAACAATGTGAACAAACAAATGCAACAACATTACTGAGATGTGCACTGAATGTGGCTAGTATGACAGAT--TCAGTTACA------CTTTTAAAACCACCATT--ATAAACAGATGTGTGACATGTTTC--TTCATTTACACTTCATTTGTCATTCATTTGACAAGAAGTCAGAGCGCCACACCAAGGAACCTCCACCCTCCCTCCTCTCATTAGCCTCTGGC-----------TCTTTTTTCCAGAGAAGTGAAA-CTTCTGTTTTGACAGGATTAAATGAACTGGAGTATGGGAGAGGAAGCCTTTAAATTTTCTTTGAAACTGAGATGCTAACTCCCAGAAGGCCAATGAGGTTCTAAACCCGAAGCACCCACATGGCGATCACTGTTAATAACTCACATACACACACCAGACAAATTCCCTCATCTGCTTACTATGCATGAGTGTGTGCAATTATGCCCGCCGTGCAACACACAAACCATACACTGCAGAGCAC-CCATCAAGTTAATGCATAATGTAGTCTCACATGGATAATTGATAACT-GAATATTGACTAGCTAGCAGAAATATGTTATTTCAACACTTTGTATTTTCATTATTAAGCAAGGAA-----GCTGGCATATATATGACTACATTATTGAATGAAATAGCTGAAGTGGAAGATATTTGAAATTGAGGCCTGAACTTGCTCATTTTCAACACCACAGC
s HiC_scaffold_1 140285874 2076 + 233722169 TAAGCTTAGCTAAAAATTGATCATCTCACAA-CAAATtggtttataaggaaacaataaCATGGGGTAAAGagttataaaaatgatttcagtGAAAAGGAATTTAACAAATGCATGTTTCATATGAGGGAAGCATtcaagat-aaaaaacaaacaaaaagttggaCTCAGTTTGAAATACCAAGGCACCAGCTTTTCCTGTTACAAGCAGTTTCCAATTTTCACCCCTAACACATGTATTGCCAACGATTA---CAGATAATAGAAGGTCTGGAGGGAC-AGAATACGATGAGAAGAATGACTGAAAGTAGAATCTTGTGTTTATCAATGTGTACGTCAATACAGTTGATGCAAGAACTGTAACCATGAATTAATTTAATGAGCCTAATCTTCAGAAAACTGGAGACCAGGTAAATGGCTGTTAGCTTATCAATTTTCAGAATGTGGAATagttgaaagcctac-attgtcaTTATGGTAAAAGGATTCTAGGGCTTGTTCTTACATGCATACTCACAGCCCTTGTAAATTcatcttaggaaaaaaaatcataattatgtTACAAAGCATTGATTTTCATTGGTG-----------------------------------GGACTTCCAAGCCATAGTGACTTAGCTCATGGAATCACCTAAGTTATC--------CCTTAATTATagcatt---aaaacaaaaccaatccgCTTGCTCAAAGGAAGCGTGAAAAGAAATGTGACTTCAAAAAGTTGTTTTAAAGAGATAGGTTTGCTTAAATAAATCTGTTCAGAGTTTCCTTTA----TGTGGT--------ACAGTTCA-TTTCTACAGCCTATTT-TCCTGTCTGTCAAGTACatctaatatttaattttagagaTTTAAA----TGTTCCCCATAC----TGAGTATCACAATATTATTCTGTCCAAAGAAatttttagttctattttttttaaaatcagaaaataacaatctaGAATAAAAAG-----------------------------------------------------------------------ACTAAAGTGac-----------------------------------------------agaattt-------------------------------------taagaa-------------------------------------------tttttca-------agagtgttaaaatat--------------------------------tcttcatttt-----------------------ataga----agGAAAATTGAAAATG--------------------------------------------------------------------GATTTCACTTGGGAACTATATATTTTCAAGTACACATAGCTAAACAGAAAGTCACAACAGCCAAGAGATGGAAACAACCTATATGTCCATAGGCAGATggatccataa------ataaaatgaaatgttactCAGCCCAGAAAAGGAAGGGACTCTCGTCAAATACTAAATCATGAATGAACCTTGAGGA-Tttatgttaaatgaagtaaaccaggc--accaaaaaaaaaaaaaaaaaaacatatagtaTGATCCCACATATATGAGGCATCTAAAATTgacaaattcatagaaacagaaaggagAATGATAATTACTGTAGGcaaagggagaagaaaatgaaagctgCTGTTTAATGGCTC----------TAGAACTT----------------------------------------------------CAGATTTAAAAGAT--------------------------------------------------------------------AAAGTTCTGGAGAGCCATTC-------AACCATGCGAATACAC-------TTGAAACTGCTGAGCCATGCacttaaaatggttaagatgTTAAATTGTATGTTACacgttttcttttaaaaacacaattaaataattaaaaaaaaaacaaatccaagGTCGCTTACATTTACTTTATTACTCATTTCA-GAGAAACCTGAG-----GACCATGGAACCT-TGCCTTCATTCCTTTAATTAGCCTCTAGCTCTCTCTTTAGTCTCTCTTTCTTAGACACAAAATCTTCCATTTTGATGGGATTAAGTGAATAGAAGTACAGGAAAGG-----TTTAAGTTTTCCTTGAAATTGAGATGCTACCTCCCAGAAGGCCGATGAAGTTCTAAACTAGAAATGTACACTTGACGACAACTATTAATAAGTAGGTTATAC-CAACAGACAAATTCCCTGACCTGCTTATTATGTATGAACATGAACAATTATG------------CACATATACCTTCCACTGCAGTGCATGGAATCAAATTAATGCATAGTATACTTTCACATGGATAATTGATAACTGGAATATTGATTAGCTAGcagaaatattttatctcaacactttgtattttcattaCTAAGCAAAAAAAATAGACAGGCATGTTTATTACTAAACTATGGAGTGAAATAGCTGAGATAGAGGATATCTGAAATTAAGACTCAAACTTGTTCCTTTTCAACAGAGCAGC

a score=47356
s chr3           153472497 1428 + 160039680 TTTTTCCTTTTCCCTCCTGCTCACTGTTATGTCCCCAGAGCTTGGGTACAGATAGTCCAGCGCATGGCAGGCAG----TGTTCATAATCTCTTAATCAGTTTTGG---CCTCTACA--TCTGGATCCCACCAAAAGCTACCTAACTAGATCAATTTTCCTTCTACAAAGACAGAAGT-------ATGAGTCCAGGAAATAAAAATGATAGTGGGCAGAACCAAGGACTATCCGGGATACAGAATCCAGAGCATTTAACGAGTTAATAAATAGCCAGGAGAGGATAGAAGAAAGCCAGAGATGTGAAGCTGAGTCTGGTTTTCAGGATGAGTGATCTGGAAAGGCGGGACTTGTAGGCA------GTAACACCCAGGGACCCTG-TCAACCAGCAGGCTTGGAATATCATCAAGGAAGT-CTAGAAACTGGTCAACTTTATAATTATAATTTCCTATGAAATATGACTTCAC------TCCATAATGTGTTATTTTGTAAAACAGTGAAGAAGCTTGGTAGACCGCGGCATTCCAAATCACCACTGGA-ACGCCGACAGTGCCCACGCAAGAAGCACTGCCATATGGGAAGGCAAGACAGAGCGAGGCAGAACAAAGGAAAGCTGACTTTGATAGATTAAACTCCTGACTTGATAAATGGTTCATGCAGATCAGCAGCGAGAAGGCCTGAGAGCCAACAAGAAGAGCCAAGAATAACCTTATAGTTT--AAGACTGAATGAATGATACAG--CCCTGACTTTGGAAAGCCCTCAGCCATGATCATGAAATATGTATCAGAAGCACTGACTGGATGGCTGACGTGTGAAGTTTCCTCTTTGGCTGTGATGAGTTGTACTTCTTTTCTGATACAGAGTGAGCCAAATTCATAGTATGGATTCTACATTTTATAATTCTTCCAGTATAAATTGTTTCAAACCAAGCAAAATCCCAAACACACTGTTTCTTGGTTGGTAGAGAAGGTGATAGTCTATAAGA-GATCTGAGCCAGCAGATTTAGGCTCTCCATCACGCAGAAAAATCACACGGCAAAACTCACAGTGGAAGAGAAAGCCACTG--CACAGTACAGGCATAGCCGAAAGGAAAGGCATTAA-ATGGAAATTATCTTTCATATGAATACACACAATTTCCACTTGATTTATCCACAATTGATATATATTATTCACCAACTGGAAAAAAAAATAAAAGCATTTCTTTCAAAGAATGCTCACTGGTCCAAAGCTT---GTGGGT-------------TGTATTTAAGAAAATTTAACAGTACATCATTTGTATTG--AGAGAAAATCATCCATGGGGCTATTTTTTATTTCATCCCAAATAATTTCAAATGTAAGAGGGGAGCGGAGGTCAGTATGGCTTCTTTGCAAACAGCTAAAGGCCAAGCAATCATTATCAGCCAGATATGGCACCGTGTTAACCCTGTTT--TTAAATTAATACttctgttaattccttga
s HiC_scaffold_1 140294628 1410 + 233722169 ttttttcatactcTTATCACTCACTGCTATATTCTCAGAGCCTAGA---AAAGAGCCTGGTATATGGCAGGCAGGCAGTGTTATTAATTCCTTAATTCATTGTGGATCCATGTAGAATTCTAAACTGGTCCAAAAGCATCCTAAACGGATCA-TCTTGCTTCT-TGAGGACAGCAGTCAGCATCACAAGGCCAGGAAACAAAGGTGATAGAAGGTCAACTCAAGAAATATCCAGGAGATACAATGCAAAGGATTCAACAATTCAATCAATGTTTGGAAGAGGGGAGA-------------------GATAATTTGTGTTTTCAGAATGAGTGAGTCAGAAAAGTGGGGctactgggaaaaaaaagaagaaatcagaaatactAATGAAGAAACAGATTTGAAATATTATAGTTAAGGTTCTTGAAGCTGATCATCTCTATAATCAT---TTCCTACAAAATATCACTTCCAATAATATCCATTAGATATTATTTTG--AGCAAGTGAAGAAACATGATAAAACCTTGCATTctgaataacttttttttaagtCAACAGTGTACACATATGAGATGGTACCATATGGGAAGGCAAGACACAGAGAGGCAGAACAAAGAAATTCTGACTTTGATGGATTAAACCCTTGACTTGATAAATGGTTCATGCAGATCAGTAACAGGAAGGCCCAGGTGCCAAcaagaaaagccaaaaataatCTTGTAGCTTAAAAGAGTGAGTGAATGAGACAGCACTCTGAGTTTGGACAAGCCTCAGCCGTGATCATGAAATGTGTATCCAAAGCATTGGCTCTTTGAGTGATACGTAAAGCTTCCTCTTTACGTGTAGTGAgagtta--ttttttctattatagaGTGAGCCAAAGTCATATTACAGAGTCTACATTTTATAATTCT---AGCATAAATTGCTTCAAACCAAGCAAAATCCAGAAGACACTTTTGCTTGGTTGGTGGAGAAAGTGGCAGCCtataaaaggaaatgaaccaGCAGCTTGAGCTGCTTTATCA--CAGGGAAATCACAACACAGATCTCAAAGTGGAAGAAAAAATGACCAACTATGCCTCAAAAATAACCTAATGGAAATACACAAAGATGGAAATAATCTTTCATGggaa----------------tttatttctttgctgtaaatatatattattctccagttataaaaaataaaata-----tttattaaaagaatgtTCACTGGTCCAAAGCTGCTAGTGGATAACCTTAGGGGtgtttttttaagaaattctATCAGTATGATATGaccactgaaagagaaattaatcCATGGGG------GTTGTTTTAACcctaattattttgaatttaagcAAAAA---GGAATCTACATGATTGCTTTGGAAACAGCTACAGCACAGACAATGCCAATCACCCAGCTCTG-----ATGTTAAGTATGTTCCATCAAATTCACAgtt------atttcttaa

a score=38089
s chr3           153481529 1277 + 160039680 GGAATTCTACCCTTCCCCAAGGCGCATTTAGGTTAGATCCCTTGTTAGTCT----------CCAGTGCAAGG---CCCCCCAGTGGTATCTGACTTATGTAATGAAATCTAAGTAACTGCCCAAG--ACTGGATTCTCTTCTTTAAAAAGACATTCAAGGTCTGGAGGTTTTATTGGGAGAGAACAGA----------------GCGCTTCTCCTCCACTTGCTCTTCACTCTTGCACGCTCTGCCACATGCACATTTGTTTCTTTTGTAAAAATTTATAAAGAGAAGCTCAAAACATCTTTGGCTTTGACTATGACATTTCTGTTTTAAAGCAGCTACTTTGATGGACACATCAACCATATGGTCTAGCGTATTTTTCAGAAGACCCAAGTATTGTGTAACAGAGAGGAAGGCT----CTTTGTTAGTT--TGAGGCATGGGTTAGTACACGAAGCAC--------AACACAGACACATTC-------CACGGAAGCCTGACTAGACAGAAACTTCTGCACACAAAGCTCCCGAGACCTCAGAGCCCAATCTCACTCTCAAACCACCTCTCCATCTATGTGCATCATCCTCATCTGCTTGGGCTGCATAAAACTGGCACCAGCAGTTTCAAAATTCTTGGTTTTCAGGAAAGAAAGAAGATTAGAAAAATCTATCACGCCAAGGTAATTTCAATTTCTGCAGCCTCGCTGTGTCTCGGGAGATCTCAGTCTCACGTGGTTTGGGAGAGGGGTGGCTACACCCGGCATACAGAGCTTCAAATTAGAGTGAGTAAATGGAGACTTGGCTGCGTGCTTTTGAAAGGCTGCCAGGCTCTGCTCAGCTGTCTTTTCTACATCAACTCTCATGTGCGAAGGAAATCAGAGAGAACAAGTTGCTGAGAACGATGCTCTTCCGCATGTGAAATGTACAGAAATCACAGGTGGTCTCCCGGACTAAATTAGACTTTCAGGGTAAATCAATAGGGTCAGCAAGTGCGTGAGGCAATAAAACT--AGACCAGACCAGTCACGGCTAAATAATAAGTTATCCCTGT--------CAATGTGGAATCTTAGAAAATAAATGGCGGAGGCCACTTTCCAAGCGTACTCTGTATGGGCTATTTTAATTGGCAGGATGCTCTAAGAATAAAATTCTCTTCATGGCAAG----TTCTCTCTGAGTTTCTAGAGCATAGATTTTGAGCACCAATGGGAGAAGGGGGTTTTCTCATTGTACA---ACTGGTAGCGT-----------GTATTCAAATCCAATGTTTACAGA----TCTCTAAGTTTCAATCTCATTATGGGGCTTCTCAAATAAAACTCAAGCACACATTATAATCCAT
s HiC_scaffold_1 140305902 1306 + 233722169 GAAACTTGGCTCCTGCACAAGGTTAATCTAGATTGGATCAGCAGGGAATTTACAAGAGAGGCCAGTAGAAGTTGTCTCACCACTGGCATTTGCATTACTTAATGAAATAGAAGTAACTATCTGAAGcactgaattgttttcttaaa--------ttgaaGCATGTGAGTACaactagaaaaaaacagaaacatcatgggtcattgctattttttttc-ctgaatcttCACTGTTAGATTCTTTACTG--TGTATATTTATCT---Tcataaaaat--gtaaagcaaagATTAAAAC--TAATGGCTTTCATTATCAAATACGCACTATGAAGCAGGCACTAGGGTAGGTACATTAAGCACTCAGT-------ACTCTACA-----------TGTAATGTCATAACCAGGAAGGCTAACACTTTGTTAGTAGATCAAGATTGATTTAATAAATGGAGTACTTAAATCGAATGAAGATACATGCTTATAGGCATGCATGCATGACTAAACAG---CTGCTGGATGCAAACCTCAAGAGATTCCAAAACTGCATCTCTGCCAAAAACCACCTCCACACATACATA-ATCAT-----TCTGCCTGGATTGCACAAGATCAGCAGcaacattttcaaatttctcGGGCTtcaggaaggagaaaa-attagaaaag-ctaTCACACAATGATAATTTCCATTTCTGTAGCCTTGCTCTGCCTTGGAAGTTCACAATCTCCTGTGGTTTGGAAGAGTAGAGGCTCACCCTGGCATGGAAAACCTTAAATTAGAG-GAATAAATGGAGACTTGGCGTAGTGATTCTGAAAGGTTGCCAGCCTCTGCTTAGCTGCCTTTTCTACATCGATTGTCATGTGCAGAGAATATCGGAATGTAGGAGCTGCTGGGAAAGATACATTCACAT-TCTGAAATGTACAAAACTCACAGGTAGTCTCTCACACTAAATTAGACTTTCAGGGTAAATCAATAGGGTCAGAAAGTACACAAGACAATAAAACTACAGACTAGACCAGTTGCTGCTAAGTAATAAGTTGTCTCTGCCAGCAACACAATGtagaaagttagaaaataaataatggaggCCATTTATCAAATACATTCTTCATGGGCTATTTTAATTTCTAGGACTCTCTAAGAATAACGTACCCTTTGTGGTAAACACTTGCTTTCAGAGCTTCTAATTGGTAAGCGTCTGAAAAAACTAGGTAAAAAAAACTATCTTCTTCCATGATCACTTCTAGAGTTCACAGAGAAAgtattaaaatcaaatatgaccAAAGAATTTGCAAAGATCCATCTTTGTTATTGAGATCCT------AAAATCAAGCACGAATTGTAACTAAT

a score=19026
s chr3           153483783 1442 + 160039680 AGACATGTTCCACAAGCAT---GGCCATTCTGCCCTCAGCAGACATCCTTTGTCCTCCTCTGGCATGTCATTCTAGGTGTCT-GCATTGTGCTGATCAGACCCCACAGCCATCAGAATGGTGAGCAGAGTAAACGTCAC-GGTTTGCTGGCATCCTCAGATATCTCATGATAGAGACACAAATGGACTAA--------GGCAGATGGCCAAGTAAATG------------AAAACCTGTGTCAGGTGTCAGCAACAACTCAGGGCGTAGAGTAATGATTCGGGCACAAAGGATGTGGA-TACAGGCAGGGAGG-GGAGGAGACAGGAAATGCACATTCAGAAACGTGATGGTGGAGGGCTTCTCCATAAGCAACATGATTCCAAACCAGACCTTTCTGCAACTTGTATGTGCTTCTCTACCATAACACCAT-GTCAGCAT-----CCTCTACAACACTTCACCACT-----TGTGTGTGATTCACTCACATGTTTACTGGCTTCTATTACATCAACGAGTTCCAGGAGGCTCAATACAGGTCTTGTCCCCTA-------GCTTGGCTCCTAGCTCAGTG-TCTGGCATCTAGTGGCTACC-------ATACCTCgg-----------atggatggatggatggatggatg---------------------------gatggatggatggatggattggatagg----------------------tgggtgcatggatgaatgggtgg-atgtaggaatagatgaaaggatgatagatggacagatggttagatgaatgAGAGAGTGTACCTCATAAAGTCAATTCTCACAGATGCCTTAAACC-------------------------ACTTTTCATGATCACCTTTATGGCAGAATGCCAGGGAACCATACTATTTCAAGGCACTGGCACACTT----TCAGTATTTTAAGCAAATAAAATGCAAAAACTCTCAAAGGGCTTGGGAGATAGGATCACTCGTATGGACTGTCTCTCCTCTTTGTACTCCACAGGCTTTTGCTACAGATCTGGATTGGAAGGAAATGGG------ACAGAGATTT---CTGACCTTGAGGACAGG-ACAGTGGCACACACAGCAG---------------GGATCGAAAGACTGCCTCCTGCTCTCCATCCTGGCTGCATGCCTGGTT-ATTTCTGGCTTGGACTACTTTCCGGAGCTTTCTAGGAT-----TCGGGCTTCTGTGCAACTCATAACACATACTGATTTGACC--CTTTTTATTTTTTTCCCACATCTCTACATTGGGAGTTTCCCATCCTGCTTAGCAACCCTTCACTTTCCCTTTATAGATGCTCCATGCTG-AGAGGCAGCAGCCATGAGGG---AGGTGTGAGGAAGGCGC------GTGGCTGGAGATGCCCACTTCGCTTCTGTCACTAGGCAGGAGAGGGAAGGCTGCT------------CTGCTTGCAACATTCTGAG-GCGTCATTTATCACAGGAACTACAGAGAATCTGGAGGAACTCATTTGGGGT--GTATAATCTAAAAGGATAGCCTGAATTAGTAAGAATAAAAATGTGTATTGCTTGCACACAGACTCTTCAGCATAGAGAAAGCTGAGACACAC
s HiC_scaffold_1 140311317 1578 + 233722169 AAGCAAGCTCCCCATGAATTTGGTCTCTTCTTTACACAGCAGATTCcctttctgtttctatgctgcATTGTACCAGGGGACCAGCACTGTGCATATTGGACTGTCCAGCCACCAACATGGTGAG----ACAAACTTGACCAGTTATCCAGTAGC---AGGTCTTTGATTACAGCAATACAAACATACTAATACATGGAGATAGACAACCAACCAAATGCACAAACATGTTAGAAAATGTGTAAGATACTAGTAACAGCTAGG----CAAAAATATGGTGTGGGGAAAAGGAATTAGAAATATAGTCAGGGAGGCAGGGGAACCAGGAAATTC-CATCCAGAAGCATGG-AGTGAAAGTGTCCTCTTTAGACCATGTAACCATAAATCAAAATCTCCCTTTATAAACATGTATTTCCACACCTTCCCAGAATAGCCAGAGTGAAAATTGCTTCCATTCTTGACCTGTAATGATATGCCTAGCTCTGTCTCACCACTCAAGTCTCCGATTAAAT-------TTCTA-----CTCTATCTGAAGTTTGCTCCCTCATCCTTTGTCTGCATCATAACTCTGTGCTTTAATACCACCTCTCTTTCTTTTGTAACACTTCGACAATCTGCAGTATAATCGcatatttgtttatttgcttatctGTCTCTCCTGTCATTTACATTATGAGTGACAGGGAACCTGGGATAGAATTTTGTCCCACACTGACCTGTCCGGTGATTAGCACAATGTGTGACATGTAG---CAGATGTCACAACGCTA---------ATGCATAAATGAATGGAAA----CACCAGTTGAAG-CAATGCTGATCAATGCCTTAATTCCTCTGCAAAGACTTGCTTTGCAGTTACTTTTCACTAGCACATTTATCATGTAATACCAGGAAATCCTGTTGTT-CATGGCATTAACATGCTTGCTTTTAAggctttaagaaaataaaaggcaaagaatATCAAAGGATTTTGAAGCCAGAAGGAGGTGTTTGGTCT-TCACTTCTCTTTGTACTCTGTAGGGCATTTCTGTCCATGtggaggagaagaaaggggaCATATCACAGGCATTTGTTCTGACCTTGAGGACAGGCAAAGCTGCCTGCATGCCAGCATTTGACAGGCCACAGTTCCAGAGAGTTTTTCTAGCTATTCACCCTGGCTGCATGCCTGGTTTATTTCTGGTTTGGACTACTTTCCGGAGCTTTCTAGGATAAAGCTTCAGCTCCCACAGAACTC--AGCACATGCTGAtctgatttgctttttatttt-----catttctccagaTTTGGAGTTTCCTGTCTTGCTTAGCcttcatttattttcctcttagagTCCTTCTGAGCTGCAGAGGCAACTGACTGGAAAGCACAGGT-TACATaagggacattgctgtgggtgAAAATGTCCATTTTACTTTTGTGACTA--CAGGTATAAAATGGCCACTTCCACACTCagacaactttgaagatatttagtgtgtctttt----caaaaaatagagaaagcatacaGAAGCTCAT---GGATTAAAATAAACTAACACGATAATC-AAATTAATGAG---CAAAATGTCCTTCAGTTACAAATGGATTGTTcagcataaagaaggataaggtatgc

a score=25608
s chr3           153487221 581 + 160039680 GTCAAGCCTC-AGAGGCAACATCGGTCCAGGAAAGTGGCATTCCGGGAGCCTTGTCTTTATCCCCACTTAGGTGCCTGTCATTTACAATTCAGGACTATGGCTGGAA-GCATTTGGCTGCGCTGAGCACAAAGTGTTTCCCCATCTTGCTGGCAAAACATAATTAACCAGATGACAATGGCTTTCACACGCACACTGATTTCTCTAATTTCAAGTCTCCATTACTAAATAAATCAACAGCAGAATTCTATTTATCAGCAAATGCCTCCTCTCCTGGTAGACATTCTGTCCAATATATTAATCCTAAAAGAGTCATACTTTCCCTCGGCTTTGCATAGCAGTCCAACCATAAACAAGTTAATGGCCACAGCTTCAC-----GTGTGACTCCTGTGT----------TAATGCTCCACACAGGGTGGTTACTGGTTTTGCTGACTGTAAGGCACAATGAAGTCAGTAGCTGGTCCACTGAGGACCATGTGGCTTGGCCACTACTTGAAGAAAGGCTGACAGTGCTGCTTTGATGG--------------TCCAGACACGAGCCACCTTGCAC---AGCCCCGTGGAAATGA----------CAGAGGGGCCA-GTCACTCTACCTCCA
s HiC_scaffold_1 140314000 613 + 233722169 GTCAAGCTGCTGGAAGCGCTGCCCGCCCAGGAGTCTGCCATTATGGAGTCTTTATCTTTATCTACATTTAGGTGCCTGTCATGTACAATACAGAACTCTGGCTCAAACACATTTGGCTGCATGAAGCATAAAGTGCTTTCCCATCCTGCTGGCAAAACATAATTAACCAAATGACAATGGCTTTCCCACACACATTGATTCCTGTAATTTCAAGTCCCCATTACTAGATAAATCAACAGCAGAATTATATTTATCAGCAAAAGCCTC--CTCCTGGCAGactttttgttaaatatattaatCCTAGAAGAGTAATACTTTCCCTCTGCTTTGCAAAGCAGTCCACCCATAAAAATGTTAATAGCCCCAGCATCATTTTCAGTATGGTGCTGGTCTATGAGCCGTGTGGTCCCCGGGGCAGGGTAGGTACCGGCTCTGCTGACTACAAGGTGCAGTAAGA--AAGAGCTGCCTCACTGGAGGCCCTGAGCCCTGGC-----TCTGCAGGAGAGCC--CAGTGCTGGTCCCGAGGCTGCCAGCTCCTTATCTGGACACAG--CACCCCTCACCTTAGTCCTTCGGAAAGGAGAGTCTGGGCCAGAGGAGACATATCACCCCACTTCCA

a score=36164
s chr3           153488875 1789 + 160039680 CTTCCAGACCAGCATCT-CAAACTCTAGAGTCCCCCAGGGCTTCCCAGGCCAGCATCTGGCTACTGACCGGGCAGCTAGAGTGCCAGGCAGGCAGGCGTGAGTGACAAGTGACAGGGTGATGCTCTACACTCCTGAGCTGGCCGAAGCCTAGCCCTGGATTAAGCAACAATGAAGGAGAGATACAGAAGCCAGGTAGCTGAGTCTGAAGACTGGAAGCTAGGCTGGGCTCTGCAAGGGA-ACCTGTCAGCTCTCCAGCTATGAGCAGATGTCCCTG--TATGTATGAGAAGTGAGTCTCTGTTGCCTGTTCTCTG-GCAGCCCTGGGTAGGCTGGAATCCTGGGCACTCCC--TTCAATCACCCACAGA--GCAGTGGAGGAAGGCAGCTGT-----GGAGTCCCATGGGAGGAGAGGGAGGTTGGATGG-----CCTCTCGGCCTCAGGGG--------------GGCGTGGTCCTGGAGTCAGTCCTCTGGCTGCTTTCCCTTGCT--------TCATATTGCTC-------------------------TCATCAATAACTATTGATAAATGAAACCATTCTCA---------TATATGTGTGTGTACTGCCTCA---TACCAGTATTTACCA-AGGGAGGGAGCTGAGATGTT--TG-GGCCTTAGT---TCTTTTTATTTTGAACT--ACTTTTTAATGACTCATTCTCCTTACCAACACAATGGGCTTAATAGCTCAATG-ATTATTTGGGGGCATTT----TAAAGTCCAGAGGGGA---TGAAC--GTTATAAGTTTCCCAATGTGCTGAGATTCCATCGATGACAAAGAGCCAAATGGCACAGCAAGTGCCTGGGTTATAACAAAA---GATACTGTTTA---GAATTGGAGGCTTCTAGGCTGAC----TGAGGTTCCGTTACAGAGAAAA-ATGAGAG--------GACATTCGCTAGCAATGGAAATACCTGTCTGGCAAGTCTGTATGATTCAGAGAAGTATGTCTGGGATCAAGGTTCTATTCTTGCAATGCATAATTGAAATGATGCCAAGA--GTTCGGTATTACCCGGCTCTACCTTGCTTCCCCTGTGTGAATGCAATCTACCCTACGCTCCCCTTGGCAAGCTAATGGCACTCTGAGGAAATCCACAGTGAGAAATTACAGCCTCCTCCTGGCCTTCTGGGCTGCCTCACGCATTTTAATCTTGGCCTCCTGACAGAAGGGCTCTGGGAATGTGACCCTGTCCTCCATACTTGCTTATTATCCTTCTTGGAAGCATGCGCCCTTATTAAAATCCATGGGATCGGTTCAGCTGCGGCACGGCTGGCTAGCCCAAATTGGAAAAA----ATGGAAATAGCAAGC---AAGAGGAAAACAATTTTACATCCTCCTTTGGATCAATAAAATTAATATTTTTCATTAAGAATAAATCATTCTCCTTGCAACATGACTGGAGATGTGTGGACACCAATGCAGACTGGAATACATATATATAATCGTAAGACATACTTGTTTGTTTGACAAATATTTCTGGAGCATCTACATTGTGTTGGGCAGTGTTTGTCTCTTGAAAACACCATTGAAAAAGTGTT-----ACAATCCTTAGCCATCTC--------TCTCCATTGAGAGAGGTCTTAGGAAGAAGCCTTCTATACCCTAAGGATC-------ACATGTAGGTGCAGGCATTTTTATCAAATAGTAAAACTATGTACACCGTCCTGGGATGAACTAATAAAGTCAGAGAGGAACTAGCTGTCATCGAGAGAAGCACGTTGGAAGAGCTGGAGTCATA-AGTGACTGAATATA------CCATG-------GCCTTGCTTTAGGATGAAGCTGGGCCATCCCAAATGGCACCCCTCCTGAGACCCAGATCAGCCTGTAAATCTGTGGCTCTCTCAGGAAGTTCT
s HiC_scaffold_1 140315107 1857 + 233722169 CCTACGGGCCAGCAGCTACAAACTC-ATAGTCCCGCTGGGT---CTGGGCCAGCATCCAGTTGCTGACTCAGCAGCCAGAGAGCTGCTCTGG-------GAATGCAGAAGAACA------TGCTC-AGAATCCAGGG--GGTCAG--------CCTGGCATGAGCAGAAGCAATGGGAAGGGACAGAA-------AGGAGAGGCCTGAGATTGGA-----GGCTGGACTCTGCGGGAGAGACCTGTTACCCCTCCAGA-GTGAGCAGATTTGAATAATTAAGGCTGAAGAGAAAATGCAGATTCCCTCTTATCTGTGCAG---TGAGGGCCCTGCATTTCTCTGTGCTGCCAGTGCATACGCTCATCGGCTGCTTTCAAATGCAGCAGCTGTTCACAAGCACACCACAGAC--AAAAGCAGGGTTAATGAAAGACCCCCTTGGTAGCCAGGGTCAGTTAGATTTCTGACTTGGCTCCAGAATCAGCCTTCAGAATGTCTTCCTTTGTTGACTTTGATCACACCACTCATCTTTTCCGGTCTCCTACTTTTCTTGGCTAACAATTAAGGATAAATGAGCTCCTCTTTACTGAGTTGCTAGATGC-TATGAGCTGGGTCACGATGTGAGGATTTAACAGAAGGAAACCCCTGAGATGTTGCTGCAGCCTTCGTGAGCAGTTTAGTTTTGAATTCAGTCATTCAGTGACTTAGCTTCCTCACCTACATAATGCAAGTAATTTCCCAATTCATCAT------GAATTTCTAATGAAGATTGAACAGGAACATGACCTTATTGTCAACTCCCCAATGTGCTAAGATTCCATGAATGGCAAGGAGtcaaatggagaaataaaggcTTTGTTTGTATCACAAAGGGATACAACTTCTCTGCCCTGGAGACCTCTATGCTACTGTTTTGAGACTCATGTGCACAGTGAATGTAAGGGCAAATCATGACAAtcattagagaaaatattctatGCCTGGAGTTTCtataaaatactaagaaataagTTTGGGATCAAAGTTCTGTTGTcggaacaaataaatgaaaagatgccAAAACATTTCAGGATCACTGAGCTCTACCTTGCTTCCCTCATGTAAATGTAATCTACTCTGTGTTCCTCTAGGTAAGCTAATGGCACTCCAAGGAAATCCACTGTGAGAAATTGCAGCTTCCTCCCGGCCTTCTCAGCCTGCTTGTGCATTTTAATCTTTACCTCCTGTCAGAAAGGCTTTGAGAATATGACCCTGCCTTCCAGACTTGCTTATTAGCCTTTCCAGAAACATGAGTCCTTATTAAAATCCATGTAGCCTGGTCAGCTATGCCACTGCTGCTGAAcccaaattaggaaaaaaatatgaaaacagcAAGCAAAAAGAGGGAAACAATTTTATATGCCCTTTCAgatgaataaaattaataatttttatcagtAATAAGTAA--CTCATTCTAGCTTGGTTAGAGATACATGATCAGTCAACCTCTCTGCATGCAATCATTTTTATTGTAAGATATAC----TCATTTAACAAACATCACCTAAGTATCTACTATG---------------GTAACTGGAAAACATAATTGGAAAAGGATGTACTAACAGTCTCAACTAATCACTTGGTTGGTTTTTGTCGATGTTGGTTTCAGGCAGAG---CTCTATTCCCAAATGATCTTTCAAAGCAAATAGATGCAGGCA-TTTTACTGAGTGGTGACAA-ATGTAAAGTGCTTTGGACCAAACTGAT--AGTCACTAGAGGATTGGATGAGGTC-AACTAAGTGCTTTAAAAGAATTGGAGTAATATTATGACTATATATAACTCCCCTATGTAAATCAGAGTTACTTAAGAA---------GTTCTCCAAATCTACTGATTTTTTGGGACTCATCATAGCATCTAAATCTGTAGTTCACAAAGCATGGTCT

a score=74576
s chr3           153491058 4781 + 160039680 [encoded data, 5679 characters]
s HiC_scaffold_1 140318692 5389 + 233722169 [encoded data, 5679 characters]

a score=65253
s chr3           153499514 5775 + 160039680 [encoded data, 6678 characters]
s HiC_scaffold_1 140326820 6086 + 233722169 [encoded data, 6678 characters]

a score=18900
s chr3           153507214 426 + 160039680 actccaaaatttgatccacaAATATTTAGAGAAATCAAGGGGTTTTACTATCTACTGGCATGTTTC--TCGTGAGTGTAAATTCACGAAATACTTTATCCACGTGTTCCATCTTCAGCCTGTGACAGGCACTTGTGAAATGATTAAC-CCATACTGCAGAGTTATAGAATATTAAGTGACAGCTAGACATAAAAGTGAGGAGAGACAGGAGGGAGGCAAGCTCTTCTCTAAAAGACACATTTTAATACAGGTAATCAATTTATCAGGACACTCAACAAATTCAAGCAACAGAC-TTCCAAAAGTTAATTTAAAACCAATTAGAGGATACACACCAAGAAAGACTCTGAGGAATTTATATATTATTAATGGTGCCTCCCTT--AACCATAAAGGTTTAATAAACAGTCTATAAATCCAGGAGATACAAAAATA
s HiC_scaffold_1 140337398 427 + 233722169 ACTCCAAAATCCAGgccacaaatatttaaaaaaatgaaagaatctt--TGACATTTGGAAGGATTCCTTTGTGGGAGTAATTTGTGGGTACATCTTAGTCACATGTTTCATTTTCAGCCTGTGCCAAGTACACATGAAATGGTTAGCACTCTACTGTAGAGCTAAAGACTATTAAATGACAgccagaaataaaagtaataaaagatgaGAGTGATGCAAACTATTCTCTAAGAGATACGACTTTATATTGGTAATCAATTTATTACGACATGCAACAAATTCAAACAATagacactttaaaaattaacttaaattcAATTAAAGGATAAACATCAAGCAAACCTCCTAAGAATTTATA---TGTTAATGGTTCTCCCCCTCCAAGTTTGAAGGTTTAGTAAAAAGCCTGTAAATCCTGCAGatattaaaaca

a score=52450
s chr3           153508636 2107 + 160039680 ctAGCCTAAGGTACTCTTCCTAGCTGCCAATATTCAACTACTTTCTCTCTCTTGGGACACCAATTGGCTATGAAGATTTAAAAGTTCAGAGATTGAAGGGTTTAAATGGTTTTAACCCTTTTAAATGTAGAAAGGTGTTAAATCCCATTATCTCTGCAGCCACTGCCAatgttaaaattcagcttggcttttttttttttttttttttttttttttttttttttttttttttttttttttgctgcaggtctaaggattacAGAGTTATAAAGAGA--CAAATGCTTTTCTCGGGTTCTATAAAGAGCTGTCCCCAACTAGGTGACCTACAGGAAATAAAGCCAGCCAGTTCTCCAACCGGTGGCCACTGATCAGAGCATCTAAATGGAAAGCTATGCATGTGAAGCTTCAAACCACCAGGAAAACAGGTAATTGCTTCCCCAGCTCCATAGGAAGCCAG-GGATTTGGCGGTTTGATGTGAGAGGGAGTGAAAGATTTCAGACATGTGTCAG-AAGTATCTAAGAATAAGAAAACAGAAAATGTTGTCAGGGACCCAAAAAAATTCTCATTGGTACAGAACAGGTACATGTGATGACTCAGAAGCCATCTTGCTCCTACTGGAAAACAGTTGCCATGGTTACCCTC------CTAGGTAACCCTCTCAGGTCTTACCTCTTGGGTCCTCACATTTATGTATCCATAGTGAGTTCGAAGAGGCTGCCTGAATGTGTAGGGCAAAGGGATCCATTTGGTCTTAGGCTGTCCAAAGCAGTTCAGGAGCAAAGGGAAAGTCGCATCATTGACAAGGCGCATGGCTAGCAGCAAGATGCACAGGGCTATGAAGCTCACCACAAGCACGGGCTTCCTCTGCAAAACAGTGGAGAAGAAAGGCAAGGAGAGTGAATGACCTCCAGCT-----CGCGCACCAGGGGCGGGGC----ACCCCTCTC----TTTCTCTCTCAGAAGAATCAAAGGATTCTCCCTTTTAGGATATTTCAGCCCGAGCAGGGGGAAAAAAGTCATTTGTCAAGCGGGTGGCCT-----TTCTGTGCC---AGTGGCAGGGAGCAGGCAG---AGAGTTCGTATACTCTTCTAGCCTTCCT-----CTTCCTTACCTTTGCATG----------CTCCTGTTCAGT-TGAAAACCTCAACTCAGACATTTCCATCCAGAGGCCACCTTTCCTAACCCCCCAGATCCTGCCCTATCACCAGCCTTTCACCAGCGACCTGCCAGCCCCA-GCAGAGATAAAGTCCCACCCTCCTCCCTCTCTGCTTTAAAGGCATTGTTGCTGCACTTTCCTCAGAGCATAATTACAGCAATTCCTTTTCTCTCACATGCTTCCCAGTTCCTGAAGCTCTAGGATGTGCCTTGTCACATGACTCTTCGTATCCATGCCTTCTGCATAGTATGACACCTTCAGTCACACAGGCACGCAGCAAACAG-TTGAGAGAAATTCATAA--------CTCCATCACATCCTGGCTGACCCAGCTTCATTCCCACCTCACACTTCTGAGTCTGTATTTAGTGGTTTCTAGCCACAGAAAACTTCAC-----------AATGTAAATTA--GAAATTTTAAGCCC------CAGAAGAGGGAAAGACAGCACAGCAAATCGCCTAAGAGCATGTCCCCTGGGTGTTGT--------------GCTGGCGCTCCTGCATCTGTCTGGGGTGAGAAAGGGTGCGGATACAATACTTGAGACCGAGCTTGATAAAACACACG---TTTGGATTGGTAGAGACATGTGAGCAG----ATCTTTGTAGATGGGAGGA--ACAAGAAAACATGGCTTGTTCTTAGGAACCAATCAGTCTCTCTTACCGTGCAGAACACAGAAGGAAAGCTATAAGCATAAGTGATAACTACAATGAGCCACCATGAGTACCAGGGTAAGATGTGCACTCTGAGTCCAGGAGACAGCAGAGAGCCAAAGCAGACTCTGCATTGTTGTTCACTTGTTCGGTCTTTCTAAGGGTGAAGGCTATA--CCGTCATGGAGGCTCAGAATTGAGGGTACTCTGGAGCAGACGAAGTAAGGCAGTTAAACACGAGTAGG---AGTCCACTTGGTACAGATAGAGGTCTTGCAAACAAAGGACGGAAGTGGAGCAAGCAGTGGAGACAAGTAGTAGGTGAGGAGCCTCAATTTAGATGGAAG
s HiC_scaffold_1 140338308 2013 + 233722169 CTGGCACAGCATGCACTTTTTAGTTGTCAATTCACCACCACCCTCTCTC----GAGCCACCAATTGGCTACAAAGATTAAAAGGTTCAGTGATTATGGGATTTAAATGATTTTAACCCCTTTAAATTTGGAAACCCTTTAAATCCCATTATCTCTGCAGCCACTGCGA--TTTGAAAATCAGCTTGG--------------------------------------------TCTTTTCTAGCTCCAGGTCTAAGGATTACAGAGTTTTAAAAGAGTGCAAATGCCTTTCTAAAGTTCCATAAAGAGCTGGCCCTAACCAGTCAACCTACAGAAAATAAAGCCAGCCAGTTCCCCAGCTGCTAAGTGctgatctgaaattctaaatggAAAGATAAGTATGGTATGCAACATACTACCAGGAAAACAGGTAATTGCTTCCTGGACTCCATATGGAGCCAGTGAATTCAATGCTTTGATGTGGGAGGG-GCAGCAGACTCTAGACCTGTGTCTGTAAGTGTCtaaga-tgagaaaaaagaaggTGTTATCAGAGACCCAAAGAAGCTCTC--TGG-ACAGA----GAGTATTCAGTGATTTGGGAGCCATCTTGTTCCTAAAGCAAAGCCGTTACCATGGCTACCCTCTGAATCCTGGGTGACCCTCTGAGGTCTTACCTCTTGTGTCCTCACATTGATGTATCCATAGTGAGTTCGCAGGGGCCGCCTGTATGTATAGGAGAACGGTATCCACTTTGTTCCGGGTTGTCCAAAGCAGTTTAGTAGCAATGGGAAATTCACTTCGTTTACAAGGCGCACAACCAGCAGGAAGAGGAATGCTGCTATGAAGCTCACCGCAATTGCAGATTTTCTCTac-aaacagtaaaaaagaaaaaaaaaaaaaaagaatgactttcAAGTGAAAGTAATCGCAGAGGGAGGTTCCTTtatccctctctctttttcttttctaggagG---AAAGGATT-TGTCATTTAGGATATTTCACTT------GGGGACAGAAAATAAT-----AACTAGGTGACCTGTTGGCTTTGTGCACTGGGTATCTGAGAGCAAGGAATGTAGTATTCGTGGACTTTTCCACCTTGTCTCTGCCCTTCCTTACCTCCTTATGTAGCTTGCCACTCCTCTTCAGTATGGAAAATGCAAGTGAGATAACCCTGACCATCGGAACCCTTTTCAAATTGCTCAATCCCCTCCCCACCAC-----------------CTCTCCATCCTAATGGAGGGGAAAGGACCTACCACTCCCACACTGGACTTTGAAAGCATACCTATCGTGCTTT-TTCACCATGTGattatttatgtgatttttcttccATGTAACTGTGAGTTCCTGAAGAACTGGCAGGTCCTGCATCATATTACTCTCTGTATCCTTGGGACCT---TAATACAGGACCTTACATAGTACAAGCACTCAACAAAAAacttgagtgaaataaatgaatgaatgtattcTTCACATTTGTGCAGACCCAAAGTCATGATGA-TTCATGCTACT-ATTTTATGTCTGGCATCTATTATGGCCAGGGAACTCTACCTGTGCTGAAGAATGTACAAAAATAAGATTCTAAATGCTACCAACAAAAGAAGGAAGGCTTTGATGCCAAGCAGTTTAAGAACAT-TTCCCTAAATGGTCTCCCATAAAGTAAAAGCAGGAGAACCT-CATCTGACTGGGGTGGAAGCAAGTAGAGAT---GTGTTTAAGACTAAGCTTGATAAAATGCATGAGTTTCAGACTAGTAGGAATTTGTGAACAGAAGTAACTTTCTAggtaaaagaaagacaaataagcA-----------------------------------------------------AAAGCTGGAAGTGTAAATG---------ATGTATCCCCTCAGATACCAAGCTCAGAAGTCCTCACCGAATTTCCTAGTTGATGGAAAGTCAAAACA-Actat---------ttgggttgttttgttctgCTAAAGGTGGCAATTGTAAGTTATAATCAAACATCAGTGATAAAGATATCTTgtagcagagagagaaa-------------aagtaagtCTAATCCAATTGCTTAGGACAGAGGT------AATGAGGAACT--AGTGCAGAAAAAGGTGGAAAAAAG--GCaggagagatg---caaattagatAAAGG

a score=17224
s chr3           153516738 413 + 160039680 ACTCTTGCCAACAGGAATGCTCTCAGAGAACAGGTTCAGAAA---------------CCAGCTCTAAGTAGGTTTTGAAACATAGTGTGTCAACATATCAAATTCCTAATTCATATGGAAAATTAAGAGACTGACACGGTGCATAGTAATTATACTTACTTTGAAATCAGTAATTGTGGACAAATTTAATTCATTTCCCCTAAATCTGGCTTTATTCCCAGTATTAGAAAGACAGATACTAGGGAGACTTGG-TAGCAGGGAGGGAAAATAAAGTGATCCTCCTG-CAGTTCTCCCAGACACTGGAAGCC-----TTGTCTTAGTGTGAGCA-TTCACAGGCACCAC-GTGATGAAGTAGGCGTGGCTTCTCGCCTCAGCTCCGTAATCCCATAGAACCTAGACCC-------ACCCTGCTAGAAGGCAAACTGTTTGGTGGTT
s HiC_scaffold_1 140346932 440 + 233722169 ATTCCTACCAAT-GGAATGCTCTTACAGAACtagttcagaaattttaaaagatggtacCAGCCCTAAGCAGGTTTTGTAATGCAGTCTGTCAA--TAACAAAATACTAACTCACATGGAAAATTAAGAGACTGATGTGAAACATGGTAATTACATTTACTTCAAAATCAGTAATTGTGGACAAATTTAATTCATTTCGCCTAAATGTGGCTTTATTCCCAGTGTTAAAAAGGCAGCTACAGGGTACTCTTAGTTAGCACTCAGGGAAAACATAGCAATTATCTTTCCCTTTCTACTAGAGAATATCAGCCACCCTTTGCTTTATTGTAGGTAGTTTGTAGGTACCAAGGTGATGGAATGGGTGTGTGTTCCTTTCTCAGCTCCACAAT-CCATGATCCTTTTATTCAGGGAAGACATCGCTAAACGACAAAATGTTTGGTGGTt

a score=26291
s chr3           153521621 1782 + 160039680 CCCTCTTGCAGGACTAAGTT-ACCCTAGAAAAGAGA-----CACATATCAAATGGCTTTTCACTAAAACCCAAGCAGAGTTTAGTCA-AGCATGGGTCCCATGGTAATAATAAGTAGTATTGTTCTAAGAATAGTTGGATTTCTAAGTAGGACAGTTGT-------AGATTGAATTTAG-------CTGGCAGGAAGCTAAACTGCTTCTGCAACTTAAAGAATAGGAGTATGAATAAGAATACTTATGGTGCATCTACGCGCCCGCAGCAGAGGCAGAAATACAGCCACGGCTT----GGCAAGAGTTT-TCCACA------CGGCCATTAGCCAGTGCTCA-----ACAATTTTTATCACCATCAGGTCAGCCCATGTGCTATTTACAAAACTTGCTTGTCATCTCAGGCTGGGTGTCTAAGT-GCAACTCAAACTCAGCAGTT-----CAAATTCCCA-----------CCATGTCCACTCTCC-CTCCTCACCCACATCGTCTCTctgagtagcggccacaagccctgcctaagagttagaacctcagc--tctatgtaccagctccaggatcttggacatcttaattctatctgaacccagatccttgtttgtaaaatcaaagggatgttagacaaattcaaccac----taacacc-----------------------cttcTTCAAACCA---------CACTGAGCTCCT------------------ACAAGAGCTGGACCTGTAGGGCATCTTC-----TTTCCCTTCCCACCTCTTTCTCTC--------------------------------------------TTGCGAAGTTGTTCCCGATCCTTCAGGA-------------------------------------------TAGCAATGCCTGACTATCACCCTTCTATCATCATCCCCC-----AATTCAGCAAACAACCCAATAGCATTCC----CCTTCTTTCTTCTCAAAAagacatcattaatcaaccgcagcaccatt-cccctaaatcaggatacaaactcagaatcctttcagcacaa----tagacaggagtgacaacggtcagatt----------accacgcaatgt---------ggaac----AGGCCTAAGGCCTATACCTTAACACATCT-TACACAAGCTGTGACCACAAGCCG---CACTGTTCCCTCTCTGGGTCTTGCTTTCCTCATGTATATATTCACTT---------------TTGCAGCATCTGGTGCCTCCACT------------------------------GCTGACATTACTAACAAGGAGAGGTCCAAGCACAACACTGCACAGGGCTTCCCTCCGGGG-CCAGGCCAGGGACTTATTACAGAGTTAGGCTTGAGTACAGATACACTCACCAACTCAAGCTGGTGACTACATAAC------AGAGATGGGGTGAGAATACATCATCTTCTATCTTAGCTGAGAGTAACCGTGAGTGAGGCCACTCAC-AGAGCCTCCCTGATTGCAGCTATTTGGTACCTACTGAGAAAAAGTTGG--AGCTAAGATATAATTTGCCCTTTTAACCCTTGGATGAGGATAAACCTCCATGCATTTTTCTACCTGGTTTTGTACTGCAGATTGTGTT--GTCCTTCATCTAGACGGAGCGGGATGTGCTAATGCACACAACCGAGCATCTCCCATGATGCCCTGGC-CACCACAGGGGGATTTTAGGTGCCTATGGAGCTAGTTTGTCAGAAAC-----ACTGTATAGGAAATGAAGCTACAGAAGAGAGGGTAACTGGGAAAGCTCACTGGATGCATCTTTTTTAAAA-TAAGGGGGAAA---TCTCCTTTCAGATCTCACACAGGACTGCATAAAGATGAAAATTTGTCTGGAGATTATTTTGACAATTTCATAAGCCAAATATTCAGATTTATTCAGTATACATTATCATGAAAATACACATGAAGCTGCTTCCCAGGGAAGAATGACAAACAG----CTGTGAAGAAACAATGTCCACTTCTCCTCCTTTAGAAA---------ACGGATTTGGCTGCAGACAGGTGAAACTGTAG
s HiC_scaffold_1 140351077 2037 + 233722169 CCCCCTTGTGGGTCAAACTTGAGCCTGAATAAAAGAATACATACATATTAAACAATTTT--GCTGAAACTCCGGCCGAGTTTTGCCACAGCACAGGTCTCGCGGTGATAATAAATTTCACTGTGCCAAGAACACTTGAATTTCTAAGTAGGACAATTTTCCTATCAATTCTGGATTTAAGATTGCATTGGCAGTAATTTGAATTGCTCATACGACATAAAGCATATTAGTTT-------ATTACTTAAAGT-CTCCGGTGCTAGGATAACGGAAGCAAAAAAAAGATCTCCACTGTTAAAACAGGAGCTCATGCACATAAAATCTGATATCAGCAATCTCTCTCTGATATACTTTTTATCAAAACCCCATTGGTCAAGGTCACATTCCAATAGCTTCCTAGCCATC-CAATTTGAAAGTTTTAGAAGCAAGCCAAATTCAATAGTCACATCCAAACTCACAAGCCTCCACTCCTGAGTGAGTTCTCTGCTCCTCACC-ATGCTGTCCCTCTAGGGAGCTGCTGTGAAAGTTAC------ATTAGAGCCCCAGCAATTAAAATCTTAACTATAGGACCT-GAgcatcttaattctctttgacTCTGGTTGCCCATCTGTAAAATCACAAAGAcaccatgaaaattaaataatgaaataataccGAAAGGGCTTGGGTACAGCTCAGCATCtggaaagcagttaataatcattaatttcctttttttaatccttATACCATGTTACCTACACGTGTGATTCTTCATCAACtgtattctttccttcttttctccctcaagAAAACTTAGCCTTCAAAACTAAAACCCAAAGGACATTTGATCTGTGAAACTGT-CCTGCCCCTCCACAACGATTCTAAAACCCTTTATTCTGACCGAAGCATACACTGTacctaggaatttttaa--attaccaATCAACCTTCATGATTCTGGAAAATTCAGCAAAT----CTATAGGTTGACAAGCTCTACCTTTTCCCCAGACAGACTCTGCTAGTCA----CAGAATCATTTCCCCTGAGTCAAGATAGAAGTCCAGAGTCTTTTCAACACAAATTCCAGGCACTAATGATACCAAGTTAACTCAGTAACTAAATCACTCAGTATTTAGACATTAGAATTTTAAGGCTTCAAGGATGTGTCTCGACACATCTGTACTCTA--TGTGTCTACAAGTCAGACCATTGACCTCTCTCTATGCCTTAGTGTCCTCATGTATATATCTGCTTGAGAACTCCTGCTGGTTCCTAAATCCAATGGCTTCACAAAAGTGACTCAGGGACCCTGAAGGGCCAGAGCTGGGCTCACTAACCAGGAAAGTTCACCACACAGCTCTGCACAAGGCTCCTATTCAGGGTCCAGGCACATTTCTCAT--CAGAGTGAGGCAGGCCTATAGA--CATTCACAAAGTGAGGCCAGTGTCTAAGTAATTGAAATAGAAATGGGGTGAGAATTTGTGATCTTTCAACTCGGCAGATAGCAGCTG---------CCACTTACCAAAGCCTACCTGATTGCAGCTATTTTGCACCTGCTGGGAAAAAGTTTGCAGAAAAAGAGATTATTTCCTTCATTAACCCTTCGCTGAGAGAAAGCCTC----------TGTAgtcaatagaacagaacagatagGACTCAATCTCCTGTGTAAGTGGATGCTTATGGGTTAAC-CTTACAACTG---------CACGAAGGCTTGCCGCTCTCTCCGGGAACTGTAAAAGTCCACGGAGCCAGTTTGTTGAAAACTTGCAGCCTTATTGGAAATGGTGCCCATAAAGCAAAAATC-CAGAGACTTTTCATTCTCTGCATATGTCTTAAAAATAAGGGGAAAAGAATCTCTTTTTGTATT--GTATAGGACAGCATGAAGATGAAAATTCCTCTAGAGATTACTC-GTTGATTCCCTAAGTCAAATACTCAAATTTATTCAGTATACCTTACTATGAAAATAGACACAAGTGAGTTCCTCAGGAAGGAACTACCAATAAGTACTTGTGAACAAACATGAGCCActtcttcaaattaaaaaaaaaaaaaatacagattcagTTGGTAGGAGGCTAGTTTGTAG

a score=33863
s chr3           153525177  981 + 160039680 AGAAGAGAAAAATCACCTGCATACCCTTGTGTTTCCCCAGTGCCTAAGCACCA---CACC----GACA-TCAGACAACAAACAACTCTGTGATTCCTTAGAAACATCCTTCCCCACACTCGTTAGGTAATTTTCCCAAAGCATTAAGTTGGCCCATATTTTTAGAATATTTTGACATTTTCA-GTGTTTTATTTTTAGGTGATATTCTGCAAATCAGATTTTGCTCCTGTTTTGACAAAGGCTTTTTCTCCCTGAGAAACACAGAGGAGCAGTTCAGCAAGGCAGGGCATCTTTTATCTGCAAAAGGCCTGCCTTTCAGGGGAGCAGACACTGGTGGCAGACCAGAGGCAAACACAGGCAGCATTTCCTA-ATGTGAGC--AGCCAGCTCTGTCCCATGGGATGA-ACAAGCAGCAACATACGTTATTCCCATGTGGCACTGAGAGCGGGTCCCAAGTACTTCTGAATATATCATTTTTATTGCCTTTTACACTGAGTTACTGTGAAAGAAAGAAGACTTTTGTGAGGACTCAAAATCAAAATAGTTTAAGAGCGTTTAGACTCTACCTCCAGGATATAAAGCAAAGCTTAAGAAAACAAATTATTCAGTTGAGGGACCACAGATGCCTCTCCCTGCTGAGCAAGCCCCACCACAGGAGGCAGATCTCATAAAATATTTACAGTGACTTTCACGGAGAGTCTATAGAATTCCTTCTAGGGTTCAGGAGCTCTGTCTCTACGGCTTTGGGACCATCCTTGTCCTCAATGATATTTACCCTAGTTTTGTCTCCTGGGCCATCCTAACCTTATCTCATGCACCTCTTGGGATTTATCTTAAGACACCCCCAATGGAATAGGTCACTAAAAGTCACACCTTCCACCAATCCTAGGGAATCCTGT--------------------------------------TGGATGTATATCATTTCTTGCAATTCTAGGGCAGAAGATTTTAATAGA---ACCCATCTGTCAGTGTAAAATGGGATCTGACGAATCATGGTATCTT
s HiC_scaffold_1 140353612 1010 + 233722169 AGGAGAGACAGGCCATCTCCACACCATCTTCTTTCGCTAGCACCCAGCCAACAATTCACCCCATGATGCTTGGAAAATGTATAA-TCCACATTTGCTTGAAAATAGCATTCGCCAAATTCATTAGGTAATTTTCC-AAAGTGTGAAATTGGCCCATATTCTTAAcatattttgacattttcatgagttttatttttaggtGATACGCTGCAAATCAGGCTTTGCTCCTGTTTTGACAAAGCCTTTTCTTCCTGAGGAAAAATAGATGAGCAGTTCACAAAGACAGGGCAGCTTTTATCTGCAAAAAATCTGCCTTTCAGCAGAGCAGACAATGCGAGCAAAACGGAGGCACACGCA--CACTATTTCCTATATGTGAATTGTGCCTCTTTCCTCCTGTGGGACACTGCAAGCGGCAAAATAGTATATTCCCATGTGGCACTGATAGCGGGTCCTGAATACTTCTGAATATATCACTTTTATTGCCTTTTATATTGAAttactgtgaaagaaaaaatgctttcatgagaattcaaaatcaaaatactttAAGAGCTTTTAGGCTCTACCTCTAGGACATAAACAAAAgcttaagaaaacaaataattctaGGAAGGGATAACAGGCACC-ATTCCTGGTGAGAGAGGGCCCCTTCTGAAAGGAGACGTCATTAAATATTTATGCTGACTTTCAGGGAAACTGCA-AGTGCTCCATCTGTGG-------GCCTTGTC-CTGATGCTACAGAACTTTGCATGCAAAGGACAGAATTTCCCTGGGTGCTTCGGCCTGGGACACGTTGACTCTGCCC--GGTCCTTCTCAGGTTTGGTGTCTGATCCTTCCTTAGAGCATATTTCACTAGAAGT------GTCCATCCATCAGAAGGATTCATGTTAATTCATTCATCATCATAAGTATACATTCATTCATCATAAGTATACATCGCCTCTTGGTTTTCTAGG---TAAATTTTTAGTAGATTTCCACTTCTTTCCATATAATCAAGAATTCCACCAACCAAGGTAtgtt

a score=47803
s chr3           153530062 1532 + 160039680 CAGCGTATTCAAATAAAGAACAACACACTTAGAAGAACATCCAGAGAGGTTTTTAACTACAAAGAACCACGCTACTAGCACCTTGAAATGCGAC-CTCAGTCTCTCTAGTTTGAAATACCTTCAAGAAATTCTTTGGTATCAAAGAACATACCTATTTCTGGTACTTTTAAGCTATAATTGTTCAAGCTCCCTGGT-GGGAAAGAAATGAAGTCTATCACAAAGAAAAACATCTCAATAAAGACCTCCA---AAAGAGGGAGAAAGCTCTCACTGGCTTGCTGAAAATACTCAACAGAACTCTTC-----CATAGCTAGGGCTGGGGCCACAGCC-AGAGAGGGGACCCAAG---TCAAGGGAGGAGCCAGGAGAGAATCA-------TGTAACTTCGTCAGTTCTGAACAAGTTCAA--------GTTGCTCAGCACAAGTCATAG--------ATTGTTT-----------AGATTACAAAGGATATGAAGAAAGTGGACTCCCTTCCCAGGACA-CTTGCCTTCCTAGAATGGCAGACAGGTACGTTAACTTCCCATAAAT-AAATGCCTAAACACACCAGCTACAACCAT--CTCCCATAAGACACTATCTGCTTCCTTCATGTGCGTTGAACTTGACCTTCAAAGCCCTTGAAACACAGAAAAGAAAGGTCCTCTTTTCTGACATTTATGAGTGTTTTTCCTGCTCGGCTGCCTTTTACCACCAG--AACAATAGACGAAGCA-TGTAGTCGGAA-CTGCTATAAACACTGACGCATCACGGGAGAGACAGACGGTTTTATTCCAGGCAGGTTAGAGCCAATCTAATCAAATCTAATGCTCTCCCTCTCTAGAAAGCCTACTACTATGTTCAATTTATTTTTTTGATTAGAAGTGCAACATGATGGGCCTCTGCTGGACCACAGTTAAACGATACTGAGGTTTGCATTTTCTCTATGAACAACT-CAGATGAAACATTAGGTTTTAAAGA---------------TAAAagaaagagagagagagagagagagagagagagagagagagagagagagagagCGCAAGCAAGCAACAACACACTCTCATACTAAAG--------TTAGAAGACACCAAGGGAGATGTGTCCTCAGTATCTGTT-------GACTTTGAAAATGT----ACTATTTCTATTCGAACTGATGATAATATGATCCTGAGAGAGAGATGCCCTGGGTTCTGGTCTTCAGAAATTTGAGAAAAAGAACTTTTTGAAA--ATATCAGTTTGAATCAGCAAAGAAGGGGCTTTTCGAGTATTTAAATAC-----------------------TGTGACTGAAGGATGGCTAGCGATGCCTTCGGTAAGGTACGAAGAACTATTTTCTTTCCATTGAACAAACCAACAGTCCC-CATCAAAACAGGGCATTGTTAGTAAGCACCCAGCAAGACTACATGGGTGCCCCGACCAG-TTTGCATGAGGGACCAACCTGCCTT-CCATAGCAAGTTTTCACTGAGCAAGAAGCCAT-TCTGCTCCTCCCACTGCCCCCTGAAGGCATGAAGTAAAAACCCTCCTAGCACAGCCCGACACACCCTCTGTCCTCAGGCAACACCGTGAGCCTGTTAGGCAACAGCAGCCTAT
s HiC_scaffold_1 140358905 1559 + 233722169 CAACATCTCCAAATAAAGAATAACACACTTGGCAGAACATTCAGAG---CTTTTAACTGCAAAGGGCTATGCTAGTAGCACCCTGAAACATAACTCTGGGGCACTTCAGTTTGAAAAACCTTCAAGAAGCTCTTTGATATCAAAGAATATACCTATTTTTGGTAGCTCTAAACTATAATCCCTCAGGATCCCTGGCAGGGGAAAACATAAAGtctcataaggaaaaaaaattctcaataaagacTTCtagacagaaaagacaaatacTTTCACAAGTCTGC-AAGAATTTTTAGCGGAGATCTTCTTCTGCCTGGCATGGTGTGGGGcagctaccaaaaaaaaagaaccaaggtATAACGAAGGAAACCACCAAAGAATTACTGTACCCATAACTAGATCAGCCCTTAACAAACtaaacatcttcctttccttggCACAAATTATGGGAATTTGAATTATCCTACCACCTAGAAGGtagcaaaatatataaagcacatAGGAT--CTTCCCAGGATATTTTGCTTTTGTAGAGTGACAGACAAGTCCATTAACTCCACATATATCAAAAGCCTAACTATGCACGTTAACAACATGCTACCCATACCCATCATTCTGTTTCCTTAA-GTGGGTTGACCTTGACCTTCAAAGCCCttgaaatgc--aaaaaaaaccCACTCTTTTCTGACACTTACAAGTGTCTT--CTGCTTGATTGCCTTTTACCGCTTGGAAATAATAGTGAAAGTACTGTGGATGAAATCAGCTATAAACATTGACAAATAACAGGAAAAGAAGACAGTTTTATTCCAGGCAGGTGAAAGCTAATCTAATCAAATctaattctctctctttct-gttagCTTACCACTATGTTCAATTTA-GTTTTTGATTAGAAGTGCAATATGATAGTATTCTCTTGGACTGCAGTTAAATGATACTGAggtttatattttcctttcaaaCAATTCCCAATGAAACAATAGATTAtttagaaggttttttttttcttaa-------------------------------------------------------caagaaaaaaac------ttCTTATAGTAAGGATAAGTTCTAAGAGGACTCCAAGCGaaac-ttttctcattgctttttttttttaaactttgaaaaggTACCAACTATTTCTATTCTAGCCAATAATAATATATGCCTAAGAGAAAAGTGTTC------CTGGGcttcagaaattttaagaaaaagagctTTTGAAAGTATACTGACTAAAGGCAGAAAAGATGTGACATTATAGGCATTTAAATACTGAATAATGGGAACAATGAGACTTGTGACTGAAGAATGGTTAGCAATTCTGTTAGCAAGGTGCAAAgtgctattttcttttcattgaacaAATGTACCTTCCCTCATCAAAACAGAGCTTTCTTAGTGAGCACAAAGCAAGCCTACATG---GCCCCAAATGGATTTCTATAAGTGACCAATTTGCCTTCCCCTCAAACATTTCCATTGACGAGGAAAACACATTTGC----CCCACTCCTCGATGATGGTACAAAGCAAAACACCTTTATCTATGCCCATGCACAGACT---TTCACGTGCAGCA-TGTAAG-TTATTAGGCAAAGTCACCCTAT

a score=31973
s chr3           153536018 1282 + 160039680 gccccCTCTCAGTGCTTCCTTCAGA---TTAACTTCCTGAGATGG-------CAAAAGACCGATACAGGCAATGCTTGGTAACTGGCTACAATGAATAATAATCTAAAGAACTACCTTGGAGGGATCACAAAATAGCGCTGTATGGTT---TCCTCCATGAAA---CTAACTCTTTTGACAATAAATCTCCACCAGCAACAGAGCTTGCTCAATGTAAGGCTGTAGGCCTGAGAGAGATTACTAATGAGATGAGTTGTCCACTGGTTTAGGGAGGGACACAAGACCCCTCCTGTCTCACTCCTTCTCC--GTCTCATCACTCCAAGTGCTATATAATGTGACATTCACACTTTCCTGAAGACGTTCCAGGCACAGATTGCAC-TCCCTAATCAGCAGATTG-TCTTTCATTTTCTTACAGACTTGAAAATTAATGATGGCTTCCTTTCATGAAATTCTTTTTTTTTTCA---------ATGCTGTATTAAATGAGAAGGGGAACGTGGGATAGCAAGGACAGC-TTCCTGTTTTCTTCTTGAAGCCCTGTGCCCTTGCCA----AGGCTCCTCCAT-AGCT------------GCAGCACCAGGAGGGGGCTTGAGACGCATACACTGACTTAGCACTAGCTCCTTAGATCTCTGACAGCCAACCTGCTCCTTCAGGATCCAGA--CTTGGGATCCTGCCTGATTCCTTTACGTCTGTAAGTCCTCCTCAGTTCACTCCTCGCAGCACCCTCCAGTGCTACTTCCGAGCTGGTAACTGGTTCATGGGGAGCTCCCTGGCTGGGCGGTGGCGCTCAGAGCAGA-AGAGTCAGCTGAGCTTCACGCCCTGGCCAGCATTAGCT--------ACACCCGGTCCCTGCAAGAGGGCGCATGGTGCCCCTCGGCTGG---GGCACTGCAGTCCCAGAGCAACCTAGAGTTCTGATGAGCT------------------GTGATTTTAATTAAGAAACTATTTCAGCATGCCGTTGTAAAATATTCAAGAAGGCTCATCAAAAA-----CGGAGCTTTAGAAGTTTCCGGTTCTTGCTGGGCTCCAGGAACTGCTTTTATTTCGAGGATGGTGATCCAC------CATCCATTGC-GCTT---CTGCTCGAGACGAGCC-------AGGGTATCATTCTGCTT------GTAGGCCCC--TCTTAATAATTCAGGCACTA--CCCTGCTGATATTTCTCAGCCTGACCTTTTACATTTCAGCCACAGG----AAGGGAAACCAGGCTGCTAGGCCCCAGCCAGGTGGTAAATAGGTTGGGTCAGGCA-CCCCATGATTTCCCGCCCTCCCATCATTGTCACTCAGGATTATCTACCTCATGAAAATGTAGTGCCtccttccctc
s HiC_scaffold_1 140361947 1348 + 233722169 GCCCATTTTTAATGTTGCTATCAGAATATTAAGTTCCCGAGAAGGTTCACTGCTCATTACTGGTTAGGGAAATGTTTTATGACAGAATACAA---------ATCCTGAGCATTATCTTGGAGGGTTCTCAAAACAGTACGGCAAGATTCTTTCCTCAGTGAAGTTGCTAAGTCTTCTGGTTATAAATCTCACTCAGCAACACTGCTTATTCAATTTAAGGCTGCAAGCCTGAGAGAGATTAAT---------CGTTGTCCACTAGTCAGGGAAAGAACGCAAGATCTA-CCCATCTTATTTCATCTTCAGGTTTAATCATTGTAAGTGTTATGTAATGTGACATTCACACGTTACTGGAGATACTCAAGGAACAAATTGCATATTACTAATCAGCAGAtcgttttttcatttttgtgcaggctttaaaattaatgatgtcttatttttattaaa--------tctttaaaaaaataacaagtcaTATTAAGAAAGAAACTGAACAGGGGAACGTAAgtactcctttcctttcttctccct--ctctcgtTGTCTTTACCATTTGATGCTTTTCCCTGAGCTAACCAATTCTAAGCAGTGCTGGAAAGAGGCTTACGGTGCAGCAACTTATTTTGCTTCGGTTCGTTAGATCTCTGACAAGCAACTTGCTCCTTCAGGATCCAAAATATTCTTTTCCCACTTGATTCTTTCATGTCTGCTATTCCTCTTTAACTTAGTGGTTGCAACATACTGGGACGCTATTGCCAGGCTGCTAATTGGGTCCTGGGGATTGTCCTGGCTGGGCTGGGGCAGCAAGGCCATATTTGGCTGGCTGGGTTCCAGGCTCTTGCCAGCATCTGCCCAGGGAGGGTCCCCTGTCACCGC-------TGCAGGCTGCCCCTCCACTGGGGTGGCACTG--GCCCTGGGGCA--CTGAAGTGCCCATCAACCCACATTGCCCTACTGCTGGGGATTTTAATTAAGAAACTATTTCAGTATGCCATtgtaaaatattgaagaaatCTCATCAAAAAGAAGCCAGgctctctgaaaataaaaattttagc-agGCCCCAGGAGccccatttattttaaaatacgaAGTTCACTTAACGCATCCCTCTCTGCTTTTCCTGCGGAAAACATGCCCCCTCCGAGGCTATTATTCTCCATCCCCGGGTGACCTTCATCCTCAGTAACTGAAGCCTTATTTCTCCCTGCCATTTCTCAGGGGGGCCTTTCAAACTTCAGCCGTGGGTGGTAGGTAAGACGAGGTTGCTCTGGCACCACACCACGGTCAGGAGCATGGGCCGGGCAGCTATATGA--TCCATCCTCCCCATTTGACTCACACACAGCTGACTCCTTCTTAAAA-------GCCACCTTCCTTC

a score=18844
s chr3           153538532 1950 + 160039680 CCTGAGTTAACAGATTTCTACTTCAAAAGTAGACAAGAGTGATTCATG-------GAGCAAA-------------------------------GCCAGGGCACAGAGCCCACCAAAAAAAATCTGACTTCCATCTGTGTTCAAGACCAGTGCCCCGTGCTGCTGCTCAGAAAAAAAAAAAGAAGGAAAAAATGTGTCCAAAATGCTTGAGAGAAATATCTGGCCTCACAGAGG----GAGATCAATGGAATTTGCCCCAAATGGGGCTGTCAGCTGTTGGTAGTGTTTGTAGCAAAC-GCAGGTGAGATTAAA-GGTAACAGCACCAGGGTGTACTTAGCATGGGGTCCTGTAAACACAGGCTTCGGGAACATGAGAGGAGAGAAAGAGTAAGCCTGCATTTATTGGAGTTTGTGGCACTGAAAAAGTTAGCTT-TTAGACAAGATGAAAATA-------CACAG--CAGCATGTGACATGCTTTAAAGGGAGAAGGCTGGTTCTCTGCCACACCAAGACAGGTTCAAGTCTCACACCTTTCTATACCAAGGGAATGTCATGGGTGTTTGTTCTTCAGATTCCCACAG-TGAGCCTGGATCACTGGTTACCTGTGCCATCCCATGG-CCAGGACCCTGAGTGTGGAGCTCTCCTGCCTGGCTCTGCCCGCTGCCCTTCCTCACAGCCCCTGGGTCTTTGCTTACTCATTTCTCCACATGGAATGCCCTTGTCCCT------------GGGTGAGACCTCTCAGATTGAAT---CTCTGAGAGCA-------------AGCCAATGTCT---------------------TGTCTGTCTCTGTCTCTTAAAGACCCCA-AAGCACTGCCCTTT-----AGAACCTCTTAGCAGCACTCACGAAGCCATTCCTGTGTGT-------------------------ACATG---TGCTGCTC-GGGCATAGATGCTGGGCCTGTGT-----ATGCATGCTACTT------CTGTG--------------------------------------GATGTA--------------TACTATTGCTGTACC------CGTGTATGGATGCTGTTCTAAttttttt---------------------------------------------------------------------aagatgtatttatttacata----------------------------------cgtacact--gtagca------gtcttcagatgtaccagaagagggtgtGCTTCTCTTTG-------------GGGCAGC----AGCAGGCCAGAAAAGTGAGGCTCTCACACTG-----------CTACCCCAGCTGTTAGCAGCTCAC----------AGCTTGAAAAGTtttct----gcctccatttctccatctataaaatgggatgaatagaagcattctcccacaaagc--ctgtaataactgaatgTGGTCCAGGAAACAATGCCATCTGCTGTGCTGTGCTGTGCTTTACAAAAACACATGAAGTCAGGA---GAGGTGTTAGCAGACATTCTTCCTGTGAGGGCTGCATGGGAGAA--------CATTAAAAGGGCTGACTTTTAATCGTGCTTAAACTCCTTAGCTGTCAACAGCACA-TTCCCACAAG----------AGTGGGAATTCCCACATTGCTTTGGGAAGATCTATGATT----------GGGCAACCAAATCACTCGTCCA-CGGTGGCGACTAGAAGATGCCAAGTGAGCTATGAACCCTCTAAACATAAGAGCTCCTCAAACCTTCTAGAACCATTCCGAAACAACTGTCTGGTTTGGAACGTGAAGGAAGGAGGCCTCAG--TCGCCACGCGCGT--GGCTCTATTCATGATGGGACGCGTACACTGCTCCACACCTCAATGACGCTGGCAGAAGAAAAGC------------------------------AACTTGCAA-----TTCC----------------------------------------------------------------------CACAGCCAAGGAC--------------------------------------------------AGAACGTGTGAACATGGCCTG-----GAGATGGCACCCTGGTCACAAGGACCCAGC-ATCTGCATCTTCCTCTCCAGTCTGGAATTCTCAGCAAGGCTGAGACAACACTAGGTCAACGATTTCTGCTTTTGAG----ATTATTATTGATTT-TTCCTATAACT-TCTCTGGCAAGGCTGGAAGAGCAGAACTCAGAGCACGCTGAAGCACACGTGGTTTCAAGTGTGAATGGTTTTATTTCTCTCA-GCCTCTCGAAGTGCATT--CTG-AACAGAGTCTATCTTACCAGGACTCTTACAAACTGT-GCCCTCCCTCCTACCTGTAACTCCGCAGAGACAATAAGGGTGAAAGGATCTGGGTGACTTCCAATCAATT
s HiC_scaffold_1 140364740 2408 + 233722169 CCCGAACAAACATCTTCAGACTCCAAAAGCAGA--GGAGTAATCCAGGCATAGACGAGCTAACACCTTTTTCTAGACTCCACAAACACAAAGTGCCAGAGCCAGGATCCCAACCCAAACAGTCTGACTTCCATTTGTGATCGTGACCATGGCCCTACGCTGC--CTCAAAGAAAA----------------TGTGCCGGAAAGACC--AGAAAAATACCTTGTAtctcagagaaagagagatcaaTGGAGTTTATCCCAAGCGACACTGTCAGCTGCTGGTGGTGTTTGTAGCAAATAGCAGTTGAGATTAAAAGGTAACA-CACCAGGGTGTAAGCAACACAAAGTCTTGTAAACATAGGTTTCAGAAACACAAGTGGGAAGAAAGAACAAACTTGCTTTTATGGGCGTTTACGGCACTGAAAAATAcagcttcttagacaagacaagAATATAAATAGCACAGGACTGCACGCCACATAC---------AAAAATCAGACTTTTTG-------------------AGCCCCAC-CTGCCATATACCAAGTGAGCATCCTG-----TTGTT-TTCTGTTCCCTGTAACTGAAGCTGGGTCAGTCGATATTTTTCCAACCACATGGCCCAGGACTCCCAAAATAAGTGCTTTCTTCCTGACTCCTCCAAGCACCTGTCAT--------GTGAGTC-TGACCCACATGACTGTGCACATGCGGCATCCTTCTTTGTTATCAACCAATGGGAAGCTATTTCTGAGGGTCAATTTGCTCTTAAAGCAGCTTTTAGTGTGCGACCACTCTCTGTGGTGAGCACTGACTCAGTCTGTGTACCACTGCTTCCCTGAGCCCACACAagtcctttccctttccccaagGCCT------ACCATATTCTGTGTCATTTCCGTGCATGGTCTGTCTGGGAGGCTCGTGTCTCACATGATTTGATGTTCAGAACATGTGTGTTAAGAATACATGGAGGGTATATGCCGTTTTGTAAACTGCGCAGTCAAAAAATTGGCCCACTGGATAAAAAGTTAGCATGATGTAATCAATAACATAATCAACATTTCAGCACCAAACTTCCAGAGtgatttttacagtatttttttttctttttcctaaatctTTGAGATACACAATCATAACTTAGGCCACAGGCTATGGAGTTTATAGCACCAAAAGATATAGCTTCTTAGACAAGGATTAAAGTCCTGGCAAGCAGAATAATCTGCCCATACACCCAATAGTGACTATTATCTCCATATATAGC-----AGGGAGTGCTTTCCTATGCTACTTCCCAGCTGGGCAGTAGAGAGCAGGCAGTAAGAGGATGTCTCCCGGGGTGGCTGGTGGTTCTAACCCCAGCTCT--GCCATGCACAAACCAAATGAGCTTAGACAAATTACTTCAGGTCTCAATTTCTTCATCAATGAAATGGGGTTAACAACCCTCTTCTGCTCAAAGGCTGCTGTAGTAATTAAAAATGGTGCACAGAATAATGTTGTTAGCTGCATTGTA------TTTGCAAAAGTGCATGTGGTTAGAAAAGAAGGCACTATCAGATCCTCCTTATGCATATGtagcatggaaaaagaaacacCCACTCTATGGACTAACTT---AACAAGCTTCAGCTCTTTGGAAATCAATGGCACACTTACCATATGATGGTCACCAAGTGGG---------CTTGCTTTCATAATGACTGCTATTTAGGCTTTAAAGATGATGGAGGCACTCTTTAACCTGCTGCTATCAGAGGATCTTAAATCAACTAGTACTCTTCTAAACAGATGAGCATCACATAACTGCTAAAACAAATCCAAAGTGATTGCCACTACTGGAA-GGGCGGGAGGAAGAGATCAGGTTTATTGTGAGCATACAATCCCATTTCTGATGGGATTTATGCACC-CTC----CTTCTATGCTGGTggcaaaagaaaagcagaaaaataatctGCAGTTGACACAAAGGAAACTTACAAATGACTTCCACGGTCCTTAATTCTCCTAACTGCATGAGTTTTCTCCATAATGATGTCGGACTGCAGCTCTGCCTGACTTCACAGGCAGACACACGGTGTGATCATTTGTGTAAGATGCGAATGAGAATACTTTGGAGAAGCAAGAACATGTGGACACTGTCCTCCTCCAGGCCGGCTCCAT--TTCCCAGGCCCTGGCTGCCTACTGTGTCTTCTTAGCTCAGAAAT--TCATCAAGGCCAAAACAGCTCTGgcttaataattttt-cttttaaaaaacattattatcAATTTCTTCCTACAACCATTTCTGGCAAGATGAGAAGACCAGAATTCAGAGACAATCGAAATACAcatgttttttattataaattat----tttcactgAGGTTTCCTGTAGCGCACTGACTGTAATGGAGTACATCATGCCAAATCTTTTATAAACCATCATCCATCTATCCACTCCCAATTTTCC--AAgcaataaaaatgagagaaactatGTGACTGCTCATTAACT

a score=4944
s chr3           153542867 478 + 160039680 TTTTTGCCTCACAGGACAGCAAGG-----CTTGTCTTTTCTTTACACTGGGAAATTAAGGTCTAAGCTTATGATCAGAGTTTCAGGATAAAAACAAGTTAAAGTTTGTGCT-CTGCAAATTTTAAATCCAGATAAGGCAGAAAGAATTCTCCCTGTGAGCAGGTCTGGTCCATGGGA---------------CAACTGACCCAGGATGCAGGCAGAAAGCCGGACTGGGCTCTCACAGTCTTTCCTTTCTCCTGGTTTCTTTCTGGCTTCTT-GCAGAGCTTCTGGAA--AAGGTAACAAAGCTATAGGGCGATCTACCTGCTTACCAGCAAACGTGCACCGGCTCGCCAACAGGA-----CGAGTGCTGCA---------------CCTACCATCAGTTCTCTGGAGATGCACTGGT---------------GTTGTACGAC--------------------GGTAAAGCTCG-TGTGTCTGCTTGGAGTCCAGGCAGAATAATGACACACAGGGTGA-CTACCCGTAATTATGATGCCTTCGCTGTGATCATCCATA
s HiC_scaffold_1 140368162 519 + 233722169 TTTATATCTCATAGGTTAGGGTGGTAACTCTCATCTTTTCCTTATGTTGAAATGCTAAGATCTAAGTTTCTGGTTAGGGATTCAGGAAAGAAATAAGCTAAC-TGTGTGCTCCTACGTGCTTTAGTTATGGAT-------GAAGAGTTCCCCATGCAATCAGGTCGAGACTGCTGGACTTTGCTTTGATACGCAGCTAAC----GATGTAGGAAGAATGCTGA-----------------TGttcttttgtctgtttcctgtctctctcATCAAAAGAGATACCAAGATGCAGGGAGCAGGGTGGTGTGGTCATC-ATCTGTCCATCTACCAACATGTACTTGTGccccatttttgtttctttagtgcTCCATTTTGGCATGAGTTGTCCAACACCATTTCTCTAAGGATGCCTTAGCATCTCAtctttattgattgattgactgattatatatatatttctttgtttagcTTGCCTTATCTGCTTGGAGGACTGGCAGGAAAATGGCATATGGTGTGAGCCATAAGCAATTA----------GATATGATCACCTTTA

a score=43807
s chr3           153544104 1659 + 160039680 TTAGACATG-TCACCTGTA-ACTGTGACATTCGGAAGCCTTACATGAACATCTTTAATAATGGCT-----------CCCATCTTCATCCAGACTGTAACCTCAAAAGATGGACTCTAGGCTCGATATTTGGTTCTTT-AACTTGTTCCTAGAATAGTCCTAATTAAAAGATCCCTCCCCCAAA----TCCCCAAGTGTTTTTGCTATCTCCCTAGGAAATAGAATGAAACAAAATTCATTTTCCT-CTCTACCAGCAATGCTTGTAAACTG----TACAAATCCCAGGAAGACCATACATTACATTTATCTTAATGTTGCTAATTGGGCCAAAAA--TGTTATTTGTTTCTTATTAAGGCTTTGAAAA-CAAGTAAATTTTACCTGTTCAATAG--CTTTCTTATCTATTCCCTTTGGTCCCAACAGAATAGAAAAGAATTTTCAATGGGGCCTTGAAAAATGACTTCTTTCTTTTGGAAAGATTATTTGACAGTGTCTGGCCCCGTGCCTTCCTTCTGGTTAttttttctttctttctttttttttttttCTAATAACCACGAGCTCTTCCTGGTTGCTTTTACTTGCTAATGGATTTTCTTTCCCGATCATT-GCTCTTACCTACATACACATGACTTCTAATGTCCTTCTGGCCTAATAGACTTGTAA-----ACAACTTGCCTTATCCAAACCCAGAGGAAAAAA--TAAAATCATAAATTAAATAATGTTCACAC--------------------CCTTTCCGTATCTCCTGCACATCGAACGCAGTTCCCTTGGCTTCCCCTTGGTTTGAACCTATCATAAAATTCTCATCTTCCAACAAGCAAGGGCACAG-AGGGATGGACAACAAAGAGATTAGCTGCCTACTAGCATATTCATGAAGGT-----CTTGTGTACGATCATGAGAAGTCTGTAAGTTACTTATAATCTCTGCAATTTACAAATATTCAGATACCCTGGTGTCTGCGGAGAAGACGCCCACATGTTTATTTATTGCACAG----------------------------------------AGGCAAAAG--------------CTGA----TGTTGCTGTTTTGGCGTCCCTTCCCTTCC-------CAGCCCAGATCAAGGACAACACAGAAGCCTTGGGAGAATTGGAGACTTGGTCCAGGAGAAAGAATCGGAACACTTAGAATCATTAAAGG--TTGTAAGATTAATCTCTCACCCTTAAACTTAGGCAGGAGATACACAGGGT---GACACAGGG-----CAGTTTCACCAAATGAGCCCTATTTCCCCTTGGTTCCTAAAT-------GGTCAGTCCTGACCCAGC---ACCTTTTCCCTAAACTGAAAGTATTAGAGGAGCTAGCAGGA------CTCTGCT------CGTAAGATACCATCGGCAAGTTCTGACC---AAGTTGCCTGGGTGTGGCTGAGTTGGTTTCAATATATCAATCACTGAATGGTATCTTGATGATTTC-ATCAGACAGAAGGGGACCTTACCTATTCATCTCACCAC-TAGTACACTGATTCTCAGTCTAGGCTAAGGGGGAAATGAAGTTTCTTTATTTAAAAGTCAAATTTTTACTTTTTGGTATCACCAACAAATAGTAATGAATGTTT---ATTAGCT-----------CTTTCCTGACTGTGCTAGAACATTCTTGGGCACTGAAGACAGTCGAAGGTTTCTAGGGAAAGGGCTGAGGGGA--TGAGAGACTCAAGAAGTGAAGCATCTATCCTGGGCGTTTTACACCCTAGCTCTCCCATAAGACACTGTAGCAAGAATGAG
s HiC_scaffold_1 140368662 1766 + 233722169 TTAGATATGATCACCTTTACGTCTTTAGACtaagaaaagataaatgagaaaatttaacAACAGTTATCCCCCAAACCTTACCATCGTCTACATTTTATCCTCAAGAGACAGTTTGTAAGTTTGATATTTAGTTCTTTTAACTTGTTTCTGTAATAGTCCTAATTAAAAagtctcccccccaaaaaaatccccAAGC-TTTTTGTTAACTCCCtaggaaatagaataaaatgaaattgatttttcttctttatcagcAAAGCTTGTAAATTGAAGGCACAAATCCCAGGAAGCCAGCACATTAAATTTATCTTAATGTTGCTAATTGGACCAAAAAAATGTCCTTTTTTGCTTATTAAAGCTTTGAAAAACAAGTAAATCCCACCTGTTCAATCATACTTCATTATCTATTTCCCTTGGCTCCAGTAGAATGGAAAA--ATTTCCAATGTGTTTATAAAAAGAGAATTCTTGCCTTTAGAGTGATTATTTGGCTGTTTCTGGCTCTAAGCTTCCCCT----------------------TTTCCACCTTTTGCTTAGGATGATGTATactctttatttgtttttatttgttaaagGATTTTCTCCTTTAATCCTTTGGTGTTACCAACA---------CTTCTAATTTTCTTCTGGTCTCAGAGACTTATGATATGAGCAATTCACTTTATCTAAGACCAgaggcaaaaaattaaaattataaatctaaCAGTGGTAATACTTTAGAGCATAAATTTCTGTCCTTTCAACGTCCTGTGCATCCCTAGCTCAGTTCTCTAGCCCTTCCATTGGTTTAAACCAACCATAAAATTTTCATCTTCTAACAATCAAGAGCACAGAAAAGATGAATGACAAAGACATTAGGTTCCTAATAACATATTTATGAAGATTCCTGCATAGGCACATCCATATGAAGTCTGTAC-TTAGGTTCAACCTGTGAAATTTCCAAACAATTTGAATTCC-----ACTAAAGAGAAGGcaccaaaatatttatttattggataGATATGATCACAATTATTAGAGAGTTTACTTCAGGAGGCTCAAATAAAAGAACTATTGAAAATCCTGAGGCGGGTGgctgtattttcatttccttcctcccATTTAAGAATCCCTGAAGAAG-----CACAGAAACCTTGAGGCGAATGGAGTC-TGTTGTATGGAAAAGAATCCAATTATTTAGAGCCATTGTAAGACATATAAAGTTTGCCCCTAAGACTTAATTGTAAGCAGGAAATCAGCAGGGGCAAGACATAGAGAAATATAGTTGTAC--AGCCAGAccaggttttcctttttttctaatttcaaggAAGGTAGTCCTGACCTAACTTGGTGTCTCCCCCAAATTGATAGAACAAAAGACACCAACTGGATCATGTCTCTGCTAAGACACACAAAAGACTTTCAGTACGTTCTAGTTCTAAACATGCCTGAATGTGCTTGAGTGTATTTAAATAC-----------AAAGGTTctattataatttcaaataaagaaaatgagttatAACCAATTCAGCTGACAAAGTGATACATCAAAGCTCAATGTGAATTA----GAAAGTATAATTTCctcttctgaaagaaaaa----aaacttttgata-catcagaaaataataatatatgttttaaataggCTTAGAGGACTAACATCATACACTGTCCTGGAACACTCTTGGAAACTGGAGGCTG--AGAGACCACCGGGGAATTAGTTGAAGATAAGTGGGAGACCCAAGGA--GAAACATTACTTCTGGAGGTTTCATAGACTGATTTCTTTATAAGATGGTTT-GCAAGAATgag

a score=31491
s chr3           153547087 2691 + 160039680 TAATGGTGTGCC---AAAGAGTCAACAAGTCCAGGCCATGTGTGTAAGCAACCCTTCAAAAATCCCTCATCAGGCAATGTA-CTGTGCAGCAAAGTGAGGCT--GGGCCTTTCCAAGGACTAGATGTATGAAAGTGAGCCCACTACACTCCTTAAAGCACAGCCACGATGGCTTGGGAGACATTTCTCTGCAGACCTGCCTCGAGCCTTTGAGTTAAACAGAAAAGCACAGTCTGTCTCCTCCGTGTCGTCTTTCGACCCTTCTCATGG-------GGCTCTTGGTTCTACCTGAATCTCATCTGTGTGCTTTTGAATACTCC--TTGTGCTCTGTGCACAGGAGGACTTcacacacacacacacacacacacacacTGCTGAGTGCACTGGACACAGCCTGTCCCTG-CAGGCAACGGGCATCTCTGTCCAGCTTTGCTGTTGACAAGCAGCCAGGGCCACAGCCTGACACAGCTCTC----------------------CACTTTCTGTCACTTACTTGCTACTTCACTCTATTAGCACAGAAAATGAGCTCATAATTAAGTGTGCTTTTTGTATAAGATTCTTCTGTCATGCAACCTACCTCAAATACCAGAATTGGCAGAGTCAAGAGAAAAATCTATACTGAGTGGATGGCAGTATCCCAAGGGCAATGCTAGCGTCTATTGAATGCAATGGAGAAAACTCACTCTGAAGAACCTGCATGCAAACATTCATCAACAGTGTTGTGCCTTCCAACTCACgtggcttt-----------------------------------------------------------------------------------------------------------------------------------------------aagcatagcttca--------------------------------------------gaccat---------------------------------------------ttttgcttcaggt------------------------------ctctctctgcagagcaggacaatgacagtaagtcctcaaaggtttatttggtatgaatgcatcacatttacgaggttcttagatgagtgtctgacacaaagtcagacttaagtaaatgttCAATTAATAAATacacacacacacacacacacacacacatacacacacGTTGTTAGTGATGGGAGTTACCCAGTGAGGAGGAGCGGGGAGTTTTCCATACACATCTTCCTGTCAGACACACTCACATGTACCCTCACCCATCCAGACACCCTCACCCACAACCTCACACATAACCTCATTTCTGGGTGAGACATGCAAAGAGGGGTCACTGACC-CATTTTAGAGA-----ATCATGGGGCTCATACAGAATCAGTTGACT------AATGACAAAGCTAGAATTTGAGGAGCA-----------TCTGAATATTCACACAACACCGTGCACAAAACATAACTAACAACAGAAACAGCTACAACCAGCCC---CAGTGCTCATGGACAGCCTACTCAATATTCTATCTGTGGTCACCACAACAGGGATGTAACCAAAGGTCGTGGTCCTCGCCCTGGACAACAGCAGGTATAGATTTATCTCTCTAAGTGGTGCAGTAGGTGGGTTTTTACTCTAAGAAAGAAAAGCTGAAATCACTATGTAAGGAACACAACCTATTGATCTGAACTGGAAAGGACGTGGTGGTTCCATGGCGAAGGTGGA-GACAGATGAGGGCGGCTGTCTCCAAGATCCC---TTCACTTCATTATCAGTGGTTCTCCGCTAATGAAATAAA-----GGGATCTGAAACCGTTTCCAACCTGCCAGTTCACGTGA-----------------------------------------------------------------ATACGCACGTGTG----------------TGCAtgtgtg----------------------catgaatggctgtatgcttgtcaccgtatgtgtctggaggacagaacacatcttcacaaat--tcattctcttctgccatgtgggtccta-gagattaaattcagataatcaggcttggtggcaggtaccttcacacactgagccacctcgcc------------aaccTGCTT-------TCAACTTCTGACCTAGAAAGTCTCTGATGTGACACACAG------TGACTGGGGAGATGGAGAAGAGGACAGAAGAGAAAGAGAATGGGACAAAGCGAAAAAGGGGAGCAGGAAAACCA-----ACTGCCTCCGGTGG--------------------CCACCAGCAGACAGCTCTCTGAACACCATGGCTGTGAAGCCAGCTCA-----------------------CAGCCTCTGCCCTGAAAAGCC----AAG---------CATCTCTTTCCC---AAAGGCTCCTCTTTCCTGTCCCCTCCATC-CATCACCATACCACCCCCACCCCTCCCATGCTCCGCAGGC-----CTGTCTGATAGATAGCAAGAGGGTCTTCCAGCAGG---TTCCACCCTTGAGGATCACAGATGGTAAGGTGGCCTGCGGCCATC--CTCACCGACGAGCACTGGGCTCAAGTGTCTAGGCTACATTCAGCACA--ATCCTTCCCAGCTGAACTCACACAGGAGACCATTCAGAGCCGTGAGCTTCCTCTGGTGTTGCTGTCACAGTGCTCCATCACTGCCTGCTTAAGGAAACATTAAATGGATGCCAGACAGGCCACTGCCTTACATATCCAT-CCCCTGCAGAGCTGTGCGGACCAAAATTCAGCCTAGGAGATGCATAGTTCTTATGTGGGCTATCTG-CACATCTGGTATGCAAAATCCCCTCTCTGGGGACCAGATGATCTCCTCAGCCAGGAGGAGTGGCAAGAGGGGAGGGATCAGGTAGTTATCAAATGCCTGCTGACTGTGGAGGACGGATGAAAGATGCACAAGATAAGGGTCCTAATCGCAAGGTCCTCCTTG-------GTCACTGCCTTTAAAACTGCTGAACATCCTCCTCGCCCAAGGGCAG-----GTGTGAGGGCCAACCCCCTGCTGTCGTgaaacacaga-ggtctcaaat-cccggttcaccat--atacatcagctttgtgactacatttatgttatttggctttactaacccttggcttcctttca
s HiC_scaffold_1 140371716 3072 + 233722169 TAATAGTGGGCCGGTATGGTGGCATAGAATCCAGGCCATATGGATGGACTCACCCCTGAAAACTCCTAAATTGGCAGAATAATTGTGTAGCATCCTGAGGTCTGGGACCTTCCCAAGgaccaaatatatgaaaataaggTGCAGAGTGACCCAAAACCACAACCA-----GTTTTGTAG---TTACTCT-CAG-CCTGGCACTGGCCTTCTGGTTAAACAGAAGAATGCTGTCTGTTGGACAGATTTTGTTTTCTGACGCTTTGTCCAGCAAGCCCGGCCCTCGGCTGTAT-----GCCCAGCTGGGTGCCCATGAACCCCGCAGCAGCACTCCCTGCAGGGGAGGCC------------------CCCGGCCCCACTGC-GGCTGCAC--GGCAGAGGCTCTCTTTGGCAGAC--TGTGTGTCTGTGGGCAGCTTGGCCACTGAAAGGTAGCTGGGATTGCAATCTGATACCTCCCTTGGGTTGGAACCTAAGGAGAATATATTTTATGCCATTCATTTGCCACTTTactacagaaacacagaaaatgaacTCATAATTAAGTGTGCTTTT-GTTTAATGTTGTTTTTTCCTGAGGCCT---CCAAGAGAGAAAATTTGCAGACTCCAGAGAAAAATCTATACGAATTCTAAGACAATATCTCA-GGGCAATAATATCTtcagttaaa----acagaaaaaataatctcattaAAGTGAGCTCACAAATATTAGTTtgtggctttgctctttactatcCACatggccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttactaaggACTGAACTCAAGGTCTTCGTGCCAAGCCACATCTgctgtctctttttttatttttcatcttgaaCGGGGTCTTGTTAAGTCCCTAACCTGCTAAGGCATGgcatcactaaattgtccagcctAGGCTCAAATTTAGGATCTTCCTACATCAACCTTCCAGTGTGCTATGCTGATGCACACACTCCACAACAGCTGGCTCCATGTTGCTTTGGGTGATTTAGTAAGCCTCCTCATTCTTCAGCCTccctgtctgtaaaatgggatttGAGTAATAAATCCTCAAAAGGCTATTTCATACTACAGCATTGTATTTATAATGTGCTGAGATCAGGAAATGGTATGAAGTATGCATTAGATGATTACTTGATGGACAGATATGAACATGCATACCACTGGGCCCAA----------------------GGAAGTCACTCCATGGCAAGGAG-----GATATTCAGTGAGCAGCGCTCTGCTAGCTGATTTCGTGTGTTACCTTAT--------------------------------------TTGTTTCTGTGATCACCTTGCCACTAGTGACCACTGATTTCATTTCAgagggaaggaaactgaggctcatatAGAATGGAGTGACTTACTTAAGTGACTGAGCAAGGATCTGAGCAGAGGTCCAGTGGAGTACAAATCTCAATGCCACATAATGTGCTCTATATTAACAGTGACAGTCACAGCTAGAGCCAACCCTGCCACTGCCACAGGGCACTGGACCCAATCTTCtgtccctgttggccacagt-----------caaAGGCTGTGTGCCTCACCCACGACTGAAACTGGTACAAATTCAGCTCCCCAAATGGCCAAGCAGATATCCACTTACC---AAAAACAAGTGCTTAAA-----ATATAGGAGAGACAGCCCATCAACCCAGACTAGAAAAGATGGAACAGCTCCAGGACAAAAATGGCTGAGTTTTGAGAAC----------AAACTCCCATTTTACCCAAACAAAAAGTAGGTATTGACTGATAAAATAAACATTAGAAGTCTGAAGCTGTTTCCAACTTCTCA-TTTAGGTGATCAGTGATTCAGAACTTAgtgaaggaagcagagaagatAAAGAGACAGAGCAACAGAGAGAAAGAATAggcagggaagaagaaagaaaggaagatgcaTATAGGGAAAGACAATAAGAGAACAAAATATGAG-AGCAACATGAGAGGCGACAAAAGGA---GGAGGATAGACAACTGTTTATTGAATGCCCACTTTCCCCAAAATTCTTTATCCTAAGAAGACATACACAACTCACCCAGCTGGAAAACCTGGATCCCAACCCTGCAACTCAAACTGCATCCATGAGGAAGAGCTTGATTAGGTTTGTGAACTCCTTCCC--------ATTTGATGCTCCTCACAGGTAGCATGCCTGGGGC--------AGGTGCCACACT----------TGTGCCAGAGC-CCCAAGAGGCACAGGGAACCCCTGCACACTGCCCTCCGTAGAGCCCCTACTGCCCAGACAGCAGCTGGCAGACA--TCCCCAGGCACCATGATGCTGAACCAAGCTCAGTGCTGTGCTGGCGCGGTTTCAGCCACCCCTGCCTCCGAGAACCCATTAAGGATTCCACTCATCTCTTCCCCCAAAAGGGCTCCTCTTTCTCATTTCTCCTGCGGCAACATCACACCAGGCCCTGAGCTCCAGGGCCCTGCTGGAAAGTGCTGGTTGATTGATAGCGACCGCCTCTTCCAGCAGAAGATTCTACCCTTGAGGATCACAGATGGTGAGATGACTTGCGGTAATTTTCTCACCAAAGAGCACTGGGCTCAGGCAGCCAGGCCATATTCAGCAGAGAATCATTTCCAGTGGAATCCACAGAGGAGACTTTTCACAGTCTTAAGCTTTCACTTGAGTTGTCATCAGACTTTCCCATCACTGActgtttaagaaaatatttaaagggcTCCACATAGTCTGCTGCTTTACAATTTCATTCCCCTGCTTGGCTGAGAGCATCAAAACGCATTCTAGGTGAAGCATGTTGGTCCTGTCTGCTATCTGTCTCCTCAGGTGTGTGAAAACCCATCCCTAGGGACTAGTTGTCCTCCTTAGCCAGCAACAGTGACAAGAGGGGATGGATAAAGTAGTTTTCAAACCTCAGCTGACTttagagg-caga-gagagaggcacaTAATTGTGCTATGGAATGGATAATCTATTCTGCATTGTAGTCAATGCTTAGGacatt-ttgaacattttccttGCCTGAAGGAAGGCACAGTGTGATGGACAGAACCATTATGGAGTGAAATGGACCTGATTTTAAATGTGGGGTTTATCATCAACACATGCGCTTTGTGACTGAG--GAAGATACTGGGGATTCTCAAACCTTAGCTTCCTTTCA

a score=20630
s chr3           153555916 846 + 160039680 GTACTACCTCTTGCAAATCTGCACAAAACAGGCCAAGATTCCAATCTGTGACACAGGAAAAGCTC-TACCATTAAATTTCCCAAAGC-------------GGGCTACC-------------------TCTATGAAGAAAGCTTTCATGA-CATAAAGGTTCAAATACAATCTGCTACATACTGCCCTTATTA--ATTAATAAATAATGTATCTTAGTATACTGAAGCTATGCAATGAATCTTTCTCT--------TTG--AACAAGAAACACTCCTGAAAGAAACCTGTCACGAGCTGAGAAGTTAGGCTTGCCCTCAACAGTATTGTAAAA-GCAGTCTCCTTGGAGCATAGTCAGCCTTG----AGAGACTCCCTCAGCCAATTCCCCCACTCCACACACGGCAGAGCTTT-----CCGCACTGTG-GGCTCAGAGCAGGAGCTTT--------CCAGTCTAGTAATGGTCTTCTGCCAGGTCCAAA-TCACCC-AACACGAAGTTTGGTATTCCCTGACTTGAGAGTTTCTGTTTCCACAGAAGATAACTGT-GGTAAACTGCTTTACCAGAAACT--CAAATCACCCAGAGTTTGTCAGAAAACACAAAGTGCCCTGGAAGAGGACCCTCCCCCACCGGCATCC-TTTCAAGCACCCATTTTTGCATTTACCGTTTCCTCACAGGATTGGAAATCAGATGGAGAGGACTGGTC-----TAGCTTTTTAAAAATAACGTCAGGATGCTATGAGAAGGGAATTGAGTTCAGACTAGAGACAGGGTGACATTTTTCTACTGATTGAAGAGGGTCGGGCTGCAGCGATGGCGTTCTCTCGTGGCCCACTCAAGGCTGT-GAATTGCTGACTTGTGAATTCCTGATGGGAAATGATGA-TAACTGGAGAGGAGGCTGATCAGAGA
s HiC_scaffold_1 140376560 901 + 233722169 gtgtaatttcttGCATACCTGGGTTA--CATATCAAGATTCAAATCTGCTACTTGGGTGATACCCACATGGTAGAATTTCCCAAATCTTTAAATTTGGTTGGACAACTGCTTGGTAAACATTCATCTTCCTTAAGGAAGGTTTTTATGGTCAGACAAGTTTACATGTTGTCTGCTACA----ACCCCTGTGGCTATTGGTTTCCCACGCACTTTAGCGTATTAAAGCCCTGCAATGACCCCTTTCCTGAATGTCCTTGCTAACCAGCA----TTCTGGAGGAAATCTGTCACAAGCCTAGA-GCTGGAACTGCATTCACCAATTTTGGAAAATACTGTCACCACAGAGCAGAGCCAGCCTCTCTGCAAGGAAGCCAAAGGATCATTCCCTGACAGTGCACAACGTGGGACCCTGGGCTCTGCATTTTGCAATCCAGAGAGAGACATTTTTCCATCTCTAGTGAAGCAATGGCTTCCTGCCAGCTCTGAACTCACCCTAAGATGAAGTCCAACATTACCTGAATTTGAGCGCTCTGCTGTCACAGTAACAAACTGTTGGTAAAAGGCTTTACCAGAAACTGATAAATCAC--AGGCAATGTCAGGAAA------ATGCTC-GGAAAGCAACCTCACTCCATCT-CATCTGTTTGAAACACCTGTGTTTGCATTTACTGTTTGCTTCAGAGACTGGGAACCAGATGGAGGAGATGGGGAGGGGGTAGCATTTTAAAG-TAATGTCGGAATAATATCAGAATGCAGT-AAGTTCAGACTAGAGAACTGCTGACATTTGTCTATTGATTGAAGAAGTTTGGGCCACAGAAATAGCTTTCACTCATGTTCCACTCAAGGTTCCAGAATTGCTTACTTGTGGATTCCTGATGGGGAGAGATGAGTAATGGGAGAGGACTCTGATCAGAGA

a score=43503
s chr3           153561539 3592 + 160039680 AGGAAGAGCAGAGGAAATGTTCATGTGATAAGCAGAGAGGC---CCACAACACA-----CTTTCCAATAGGAGAGGGGCTCCCTTGCTCTAGGCATCCAGTGAG----ACATGAGAGGGTCAATCTCTGGGAAAAAAAATGGTAGCCAGGCCCCAAATGTAGACTTGGCAGCACTCACATAAAATAGGTCAGAGGAGCATGAGTTCATCTGTGTTCTATGTGTAAGTCCTTCACCCCATGGGCTATTCCTCCAGCCTATTTGCTGAATTCAGGCCCATTAACAAGAAGGTTAATTTCTCTTTCATTTCTCAAGATTAATACATTCTCTC----------------------------AAAGAGAAAAAAAGGGTCAAACTCACCTCAAACCCAGAACTGCTCCAAACAGCTTTTG----ATTGAATCTCTTTC---------------AAGTGTGGACGTATGCTCTGTGCAAAG------GCCTCACTGAGACTGGGCATCCTCAGCTCCACCTGAGCCCCAGGCCATCCTCATCC-CTACTCCAAATACCTAACTCCCAACCAGGAACCAAGGGAGGGGTGGCTCAGTTCTTA--------------------------------------AAGTTAAAGGATGACGAGAGATGGGAGAACCCAGTACAAAGTTGGCTACTTTCCAATATACTAAAAAATTACATCCAATGGTAGAATTTAACACAAAGGAAAAAATACAGGTGCATAATTTCAAAACAA----AATAATTTTAATTTCACAAGCCCCTTGGTTCTTTGTGTGTGAGCGATATCTTCTCACTAGCAATTCTTTGGGGAGTATTGATGTTAAAGTCCCCAAATCTCTCATCTATAAGGATCCAGACTCAGCACAAGGCTCC-TTGGGGAGTGCAGACATGGGTCCAGGGGGACATTTCTCAGTACAGCAGAAAAAGAGAGCACCCGTGCTGAATGTCA-GGCACAT--AAACATTTTGGTCTGTCCTCCACAGTCTGGTGATCGGGGGTGGGGAGGACTCAATAGCAAGATCCAGGAATCTAGAGTATGTCTGCAGAGTG-CTGGAA-----------TCTTTAGAGAAG-AGGAAACTGAGGtgttgttgttgttgttgttgttgttgttgttattTTTAACTTGCAAAATCAATTGACAACTTCTGCTTACCAC-AAACGATACTTGGTCAATGACAACATATGTC-GACCTAATCCTATGGGAGCCATGTAGGACAGTCAATTCTGTGACGAGTAGGTGGCTCCCCTAAGAAGCCTGAAAGCAGAGGGTGCTAGAGGCCCGGAGGCTGATGTGATATCAGTATCAGCCTGGAGAGGCCACCAAGTAAGAGAAATGAGATGCTGGAGAGATGTCTGGCTAGTAAAATGCTTGCTTTACAGCACTACTAGCTGAGTCTAGTCCAACACttgttttgttttgttttgttttTAAGATGATTAAGGTGGCACCGGGGAAGTGTGTTCAAACAGACAACTGGAGTTCCCAGACCAACCAACCCAGCTTACTTAGCAAACGCCAGGCCAATAAGAGCCCCTGTTTCTAAACAACAGCAACAACACTGGTTAGCACCTGAGAGAACCAGGTCTGAGGTTGTCCTCTGGCTTCTACATGCACACTCGTATACATGTCTGTCCTCAAATACATGAAAGCACATATACACAGAGGGAAAAGTATAAACAACGTACATCATATATACATGTACTACATACATACCCAtagctgcccatacctttaaaatgtggcatttacataagcctcagattctgacttcctttgaaagatttgacaacaaaggctcctcattcctgaatggcCCCAGT-------GATGCCAACTGTATTCTGGGGAGT-------------------TGGG--AGTTATTACATTACTTGCCGGGTATGTGCAAACATCCGGTGTAGGATTATACTCCATGCAACTCCTAAATGGACTGGTGGAGACTTTGAAAAGATCAACAGCAAAGAGAAAGGGGAA-------GAAGATACTGG-AGACAGACTCAGGC----------CCCACGGCCTTCACTGCACGATTATTAATGCTttgctagaggtgagctctaaacttggatctgagattcctcacagcTGAATGGAGCTTACAATCTTGAAACGAAACCAGAGTCAGATTTCCCTCTCCTTCAGGAAATACAATCTCACTGTGCCAAAGTCATCAAACTGCATAAAAAAT--------------TAAATATGAATCAGGGCGATCCAAGGCATACAGAGTGCCTTACACTGGGTACTCTACAGAGTAACTGGAGTGGCTCCCTACCAGTGGGTCTGGAGGCAGTCCT-----------------------------CAGCGGGGCCTCCTGCTCAGGCACAGCTCTCCAACCACAGAA--------------------------------------------------AGGACAACTCAATGGTGTCT-----ATACAAAACGGAAGGGACTG---------GGAAACCCATCATTCCTGATAATACCCGAATTTCTAGCTCGTCTCGTCTTCTTCCCACTAaattactttactcttcgc-----tgtaaccgaatatttggaagaagtaactcaaaacaaagtggcttcaagtttgggctcatgatttaagaaggcaagaatccattctggtggggac-----ggcgagactgactctttggagggaggagcaagcatgag-gcagggattctctgtatcagaccaggaaacagaaccgagggaacaaaggttttcctcttccttcctcctttcccccaag---cccatgagatgaaaccgcccagctttagagtgggtcttcccacctctgtagactcctcccaggatctt---ctcctacatgattccagatcaagttgacaatgtagatcaaac--atcacaCTTTTGGAATTATTTAATAAATTTGGGTTGCTCTCAAACTATTCC---AAACATTAAGCAAGTTAAAAGTAGAAGGCCTGCTGGCGTGCTGGGCATAGGGACTTCGGCATTGTGGTGTGCTGGGCACAGGGACTTCGGCATTGAGACCTTGGGATCTAATTTCCTTTTTTCTCTTCAAG-ACAGATCACTCATGTATGGCTGGCTCT---------------AGACTCCAG------CAGGC-TACAAGACAGGACTCAGAAGGGAACGGGTCCCTCTCATTGTGACA-TCTGTCCTCCAGCATGTTACAA-GCCCAGTGCAG--GATTGCTTTCCCTCGCTCTCTCCTAACTCAGCATCAAATGCCACTGAGATAAATTCTAGCTGGCACTCAACAATCCCACCCTTATTTCTACATGTTTCTGCTGTGGAGTTTCATGTGGCCTGGGTGAAATTAACGGCCAAACCCATTTGGCAAAGCAAAACAAATCTTGAATTAACAAATAGCCCCGCTGCTGCACCATGGTTTATTGGAGGAAGAAAAAATAGAGTTTGTGCATTT-GCTCAGCTCAATATCTTATGTGTATCAAAATGAGGAACAAAGAGCTCCTCGCGTCAATAATGGAATTTCAAGCAGCCGTGGGGACAGGACTACAATTTTCTCTCCTACATAAATGGAAGATCTGTGAGTTCTGTGGGGAATAGAATCTTTCCAGACGAATCAATTAAAAAATTATAAAGCATTTTGGTTGCTGAGTCCGGCGGACGTGAGAATGTCCCATCCTCCACCTTCTCAGTGACATGGAGGATAGAAAGT--GAATCTTTTTTCATGAGATATTGACTTCATCTTTATATCAAAGCAGCCATGGCCATTATAGAGTCCGCTGGTATTTC----------AGCGAGGATA---CCAGTCAGGGGAGGACTTACACAATATTGGCTGCATTTAATT
s HiC_scaffold_1 140384732 3318 + 233722169 aaaaagacttggggAGACTTTTCCGTGATAAGCATGAAGGCGGTCCACAAAGAAGAAAGCTTagcaa-aggaaggaaatttaTTTTCCACAGCCAGAAAGTAAGgaacagacatgaggatcaatttataaaacaaacaa-ggCTGACAGGCTTCAAACGCAG-CCTGGCACTGATTCTATGAAACAGGTCAAAGGTGCATGACATCATCTATGTTCT----TTAAACCCATCTTCCCTGGGGACTATCCCCAGGTCTGTTTGCTGAATTCAAACACTCTGCCAGTAAGAT--------CTTTAGGTTTTCCAGAG-GATATATTCTCTTCCACAGGCTAGAAAAGGtcatcctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctgagctGATTCTAAAAGCTTTTGCATAGATGGATCTTTTTCTATCAAATGCAGACTGAATAAGGACACGTACCCCTTAGAAGGTGACCAGTCTCACTG-------------CCTGCACCAGCTGCCCCCCAG-CCATTCTCGTCCTCCCCTCCCTGTCCTTGACCTCTCATCA-------ACTGAAGAGTGGCTAAAATCTGGTCATGACTTTTCTGATTTCATAGAACAACACCATCTAGAAATAAAGGGATAAACAGAGATGACAGGAGCTATTTTAAGATCACCAACTTTCTGTTTTGTCAAGTAAATACATCcca-------attttg------ggaaaaaaaataagtacatCATCTCAAAGTGAGTTTAACAGTattaatttaatgaaattcttG-TAGTTTGTATCTCAGACAAATTTTCAGAGGAAGTAGTATTTGGGGAGTATGGATATCAATGATCCTAAACCTCGCATCTGGAGTCATAAAATTTCAGTGTAAGGCTCCATCAAGGAGCATGGGTGTGATCCTAACTGTATGTTTCACATTAGGGCA---AAAGAGAGAGCTCTCTCTTGAAGTCACAGCACTCCAGAACAGTTGAGTCGG--------------------GGGAGAAAGACAGATTCATGAGATAAGTCTGGGGTTTTGCAGGGTGTCTTCACAGTGTCTGTAACATAGTCATGGTCCTCAGAGAAACAAGCAACTA-------------------GCTTTCCTTTGTCTTATTC----CTTTCAAAATCCTTCAGCAGCTATTACTGATTAAGAAATGGCACTTGACACGTGACCAAATACACAAGACCACATACTAAAACAGCCAAGGTGGTTG--CAATTCCATTCCAACTGGATAGCTACCAAGCAAAGCTTTAAGTCAGATGGTACAAAA----------------------CAGT-------------------CATGCAAAAG------------------------------CAAAATG---------------TACTacc--------------catatatttttttctaggttGC--------------AAGGGACACCAAGAAAG---------------------------------------------------------------------AAG---------------------------------------------------------------------------------------------Tatatgtctgt----------atgtgtgtgtgtatgcaca--------------------------ttcaTAGCCCTGTGCTT------------TAACTGACTAAGCTTAAAATTTGTGGCATTTACCCAAACCT-----TCTGATTTCTCTAGAGAAGTCTGGCAGTAAAGAGCCTGCATTCCAGTGTGGCCATAGCTTTAAGAGAAGCTA---------TGGAGAATCTTACCAGGCCCTCATCCCTGGGTTGATTATAACATTGCCTGCCTGGTACCTGTAAGCATCTG-TGTTGGTTTATACTC--TGCCCCTGCC-------TTGAAAGAAGCTTAGAAAAGATCCATAgcaaagagaaaggggaaagcaAGAGAAGACACAATTAGATGAATTCAGGAAAAGTCACAACCCGCAGTATTCACTACACAGCTCTGTACACTTTGCTGGACGTGGGCT-GAAATTTGGTTCTGGACTTCTTTGCCACTGACCACAGTTCACAGt-gtgagataaaaacaaaatcaagtttTTATC-CTTTAATAAAATGCAGTCTTACTATAGTAACAACATGAAATCCCATGTAACATGTCTTgtaccccttcccatttgaaaaagacctCCCTGTTCCctat----cctcttttattttgctctttat-gtgtaatttg---ggtttctta--------tatgaGAGAAATCATGCTAATTTAAactcatgtatttcacttaacattatagcctca-----aggtacatccatttacctataaaattggAGGGagtggggaaggggaaagggaaaagggataaaaaaggaattgaagaaaaaatggaaagttttttgcaaatgagaaggggaagagactaaaaaagaatgaagatgtgttatgcatG----TGCACAAACT-------------------------Ctccataattttatgtattgcagacatgta--tgaata-----aaaaagaaaagaaacatagagTGACACAAGGC---AGCACAAAGTGCCAAAATGCATGGATC--------TGGGGACAAAGTGGCCAGAGTAGCCCCTGGTGGGAGCGGGTCAGGAGGAGCACTGAGA-----------AATATAAGATACAGATCTGGCAGAGCA---------------------------CCCCAAGGACTGCATATGGGAAAAC------------GAGATTGTGTCAAAACAACAGGAGGA------CAGGATATTAAATTCATTCA-GCCATCAGGTAATGCCCTTAATTTCTAGCAAATCTACTTTGCTTCCTGAAGTATTTCCTTTATATGGGTTGTTGTGACACTACTATGGGAAACTCTAAGCTAGTTAAAAATGAAATGCCT--------------CTTAGAGA-----------------GCAGTGCATAAAGACCTCGGCTTTGAGACTTAAGGatccaatttctttttctctcttcaaatGAAGATCACTCATGCAAGGCGGACCCTCCTTGTTTCATGTGGATACTGAAGGGAAAACTGGCATTCTGGGCAGAGCTGAGAAAGGAAAGGGTCCCATTCACAGAGGCAGTCTCTCCTCCTG---GCTACCGTGCCCAGCACAAtagattgcttttgcttttcctcttttacatCTGCATCAAGCATCATCAAGACAAATTCTAACAACTACTTGACAACCCTGCTTCTATTTCTGCATGTCACTGATACACAGTTTTGTGTGGCCTGAGTGAAATAAATGGCTAA-TCCATTTGGCAAAGCAGAACAAATCTTGAATTAACAAACAGCACTGCTACTACTTCTTGGTTTATTAGTGGAG--AAAGAtatattttgtgcattttattcAGCTCAATATCTTATCTGTATCAAAATGAGGAACAAAGAGCTTATCACATCAATAATGGCCATTCAAGCAGCCATAGAGACAGGACTACAATTCTCTTCCCTACATAAATGG-AGATCTGTGAGTTCTACAGGGAATAGACTC-CTCCAGACcaatcaattaaaaaattataaagca-gtTGGTGGCTGAGTCAGTAGGACATGAGAGCATCACatatttcctcttctcttctatATTG----TACAAGGTTGGAATCTTTTTTCATGAGCTATTGACTACTTCCTTATATCAAAGTGGCCACAGTCATTAGAGACTCAGCCATAACTTctgtagaacaaaacaaaaaaaaatcctatctAGGGAGAATTTACAGAACACTGGCAACTTTTGATT

a score=37732
s chr3           153568231 1258 + 160039680 TTCTGCAATATCTACCATATATAAATTTAGTAAACTTCTATTAAGGCAATAAACATAAAATGAGCCTCAAAAGCACGAGCAGTTCTTCTAGCACGATGGACAGGGATCTTGTCTGGCTGGAACCAAGTTTTGGTTTGGATTCTCAGAGCTTCTGGCATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCCACCTCCTACTGTGTTGCTCCACTGGAAGCTACCCTATCTACCATCTCAAAGGATGGATT--AGTAAACCATTCTTGCAAGGCA-TTTGAGCAACTCACAGAAAGAGATGTTTGAAGTACAAATTATTATTTTTAAAGGTTTCCCAAGAGCGGGCCAGCAGTTACTACAATTACTATTCAGTGAAGAATCT---TAAGTGCACACAGCAGACACGCCTGGCGAACTCAACTGTTTCCATGGGTCTTAAAGGTTTAAACTAATCACACCTGTATGGTTTCTGAAGATAATCTGATGGCTATAACATACAGAGATAGATAGCTTCATTACCACAAATGACTCCAGAGCA--ATCCAGGAGAGAGGAAAGCCGCTACTGTTATGCAGATGTTGCTGCCTAGAGCTAA-CCCAACTCCTTCCTGACACCTTGGCTG---GCTCTAAGTAATAGGATTTCAGAATGTTACTGACTGGCTAAGAGGGTTTCCCATCTGTAAAATGA--------GAGAGAACTGCCACTAATCTCTCCAGCCTTAGGAATGCACAATGGCTTTTGTGGTTTGTACAAAATAACAACAGTGAGAGTCATATCCAAGTCATA------------CAGCCCACCCTTATCTCTGTGCTTCCGCCACCCTGGAGGCAGTCTCTACACTGAATACAATCTGGCTGCCCAGTGACTCGCAGTGGCTGTTCTTGCTCAAAGTTCGCCCTAC----CTCAGCCACATATCACTCATTCCAACATCCCATTTAGCCACAAGAACCAATCAACAGATAAAAGATGTTGGGGAAGAAAAGTGCTTCCTTGGTCCATCAGAAGAA-----CTTAGATCACGAGCAATGAGTGATTCTAACTCATCAAC---AGAAATAGCAC--CAACTGCCAGGGTC-----------AAACGTGGTGTCCAGGTGAGCAAATACATTTACCCAGCGTTGGCTAAAGAAATTCAACACTAGTGCTGAAAATTGA-------TGGGTGCAAAGGGCTCTGTCTAACTTGAAAGATCAGACATTCTGTCACCTTCACAGAGCTTCAGTGTCATGCACTGTATTAGAATTCTGCAGAGAAAAAGAGCCAATATCCATTGATAAAACAGCAA
s HiC_scaffold_1 140389637 1240 + 233722169 TCCTACTGCTTCTATTTCAGAAAAGTTTAATGAGGCTCTACTATATCAGTAAACATGAAATAACTTTGGCCAAC-TAAGATGTTATTCTAACGTGATGAATAAGGATCCTGTCTGAGCAAATCTGGGTGGAGGTTTGGGTTCTAGGAGCTCCCCACAAGTGGGAGT--------------------------CCCTGCTACT----------------------TCCAGATGCCATCTCACAGGATGGATTTAAGTAAATGATTCCTGCAAGGAACTTTGAACACCTCACTGAAAGGCAT--TTGAAGCACAAATTATT---TTTACAGGAGATATGAGAGCAAGGCAGTAGTTACTACAATTACTGTTCAATGAAGAATCTCCTTAAATGCACATGGTAGATGTACTTGGTGAACTTTAGTATTTTTGTGACTCATAAAGGTTTAAGTCAATAACA--------GTTACTGAAGTTAATTTGATGACTATAATACAGAGAGATGGATAGGTTCATCACTACAAATGAACCCAGTGCAGCATGCA-GAAATATTAAAGCTACTACTACTATGCAGATGTAGCTGCCTAGAGCTAACCCCAACTCCTTCATGACACCTTCCCTGTTTGTTCTGGATAATAGAATTTCAGGTTGCTACAGATTTGCTAAGgactttcctcatctgtaaaaggaaGGCAATGGAGGAAATCCCCATGGCTCCTTCCAGCTGCATGAGTACACAATGGCTTCTGGAtgttatgcaaaataacaacagtaAGTGCTTTATCCAACTGACAAAGAACTCCTGGCAACCTCCTCTTATCTCTCTGCTTCAGTTACCTTGATTGCAGCAGTTACCTTTAATAAGATTCATCCATCCAGTGTCTCTAAGT---TGTTTTAGTTCAAATCTCTTCCTACCTTGCTTGACCAAATGCCATTCATCGTAGGATACCACTAAGGCCCAAAAGCTAATCCACAGatgaaaggtg--aaaaaaaaagagtactt-cTGGGGTCACAAGAAGGGTGACTCTGAGAT---AGGGAATTACAGATTCTAACATATCAACTTTAGAAAGAGTACAGCAACTGCCAGGGCTGAACATTACAGAAACGTAGTGTTCAGAGGATCAAA---ATGTCCTCAGCAAGCACC-AAGGCATGAGACACTGGAGCTGGGAAACAATTTCCCTTTGCCACAAAGGTATCTG-CTA--TTTAGAGTATGAATAGTTTGTCATTTGCACAGATCTTCAGTATTATGTGCTGTGTTTG---TTTCCAGAGGAATAAAACCAATGTCAATCAATGAAAGTACAA

a score=44919
s chr3           153571065 2034 + 160039680 TGGAAAGAGAATATAGAACCCAGCATCAACACATTACAAGTACTTAGCGAGTGGGAGCTATGACTTTAAACTATTATCTGATTGCTTTAGAGATCAGCCTTAACTAAAAACAGAAACCCTTCTGCAGGCTGACATTTAAAAGGCCACCAC-ACAAAGAACACAGACCGGCTTCCAGGAAGGTACTTGTGAAAGCGTGGGCTGGCGAATCAACGGCACGGGATGTTCTCTTCCAACAGCTTGCCATTTCAGCATCTTTCGATTAGGCCGACACATGGTGCTCTCGAATGGCCCAGCTTCCCTCCCACGTTTGCAGACCAGGATTATTCTAAATAGGAAGC-CAGTCCCCAAAACCTCCCACTTGCCGCCAACACAGGTCAGCCACAGGATTGTGTGCAGTCAGGCTGTGGAGCAGGTGCGACTACCTGTGTGAAGGTCACAGCCTAGTTATTTTATGTGTCA------GTCTGAAGATAAAAGCAGAC----------AACAATG-------------AACCAGTCTGCACTCTCCCC-----------------------------------GTGGAAGGAGATTGTCTTAAATTTGGGAAGTGGTTT---GTCACTGAGATAACCTCAGCTACCCTGCAAAACAAAGCAAATAAAC--AAACTCGCTGGAAGTGAGGGTGC-------------ACACTTGAATTCAACTCTAAGGCAGACGCAGTGCTGGGCACT-GCTGTTCAGTTACTTTGT-CTGTCTTCAGTA-GACACCGGTCATGGCGCCCTTTCTCCCTAGAGTCCTCCCCACGGTGATCTATAAACTGTAAAGTGCTAGTGCTTTAAAATGATTTTAAAGCAAGCCCTGGAATTACATTAAGGGCTTGCTTTAAAA---TGATTTT-------AAAGCAAGC-----------------------------------------------------CCTGGAATTACATTAAGGGCTT-ATCCGAGCCAGAAGGAGGCTGATGATGGTCAGGAGGAACCGACGCAGAAGGGTCACGTAACCATTTCCGGTCGGCAGTGGAGCCA-------------CTCCGCCCCCT-----------CTTACCAATGAATCCCTGTCCATATAGACCTCAAAGTGCTCAG---CCTGCTCGCTGTCTGCGGGTTTGGCCTCCTG----ACCAGACGTTTCCATTACCGCAGCTGC--------TGTTTGTAAGCGTGTAGCAGCCCT----GCGTCTTA-----ATGCTTCTCA-CCACACGCTTAATTTTTTTTTCTTCTCCTAGAAGAAATTATGGCCATTTCGGCTGAGTGTCCCCATTCTGTATTCTTTCAGAGCTCGTATTCATCTTTTATTTTCCTGAATGAGGTTTGGTTTATAGCATATAAGATAGGAAAACAGGATTGAAAAGGCTGGGAGAATATAAATCTTCCCTTGGAAACAAAATGCTCTCAGCGCATTTTAAAGACTTCAGAGTTTTTTTGACGCCCTCA-TTCACTGGAGAATTTTGGAGGAAGTAAAATCCGAGAATCCCTCTCCCTCTTCCCCCCGCCACTCCCCTATCTCTCTCTTTCACACACACACAGAAATAAAA-----AAATTTAAAAAGCCAGCCATATAGCCTGATTATTCCAATGTCTTCCAGTACACTGTGTGTTCCGTCAGACACTCCATGTTGGAAAGGTTTTCCATGTCTCGCTGGGTT---TGCACATTCCTTTTTTCCAGCCAAAGTTCAGATACCTCGAGGACAGAG-CTACACCCTAACCATGCGGTAGAGGTCT------ATTACATCATG----GTGG---TCTATTACATCATGGAGGTCTATTACATCATGGATCGCTT-------AGGCAAATCCCAGAG-CTCCACTGGTGTGGGTACTCTGGGACTCGGTGCTTTTCCCAGGCTACCCCACTCCAGAGGGCCCTTCATGTCACCATAAAACTGATTTCTTTACCTAGCCACACAGGAGGACAAGATCCTCAATGGCTCTAGACTAGTCTTCTGGATATAAACACACCAATG--AAAAAGCTGTAGTTTTCTTCATAAGCTAAGGATGTGAGGACCTAAAGGAGCAGGGTTCTGATGACAAAGC-------------TTAAAGATGA-GCAATTCGGAAGGAAGGT--GTGTTGTAATGTGTAATCCCAATGATGTTGTTTCTAGCACGTTC-AAACAGCAGCCAAATGAATGGCTCCATCCTCAGAATGAAATA----CATTTTAT
s HiC_scaffold_1 140391789 2170 + 233722169 TGTAAGGAAAGTGCTGAGAGCAGTGCCAGCACACAGCAAGCGCTCAATAAGCAGTGGCTATTACTTTAA-CTATTATCTGATTGCCTTAGAGATCAGCCTTTCCTAAAAACAGAAACCCTTCTGCAGTGTGACATTTAAAAGGCCACCACCACAAAGAATACGCTCCGGCTTCCAGGAAGGTACTTGTGAAAGCGTGGGCTGATGAATAAATGACATTTGATTTTCTATTCCAACATCTTTCCATTGCAACATTTTCTCATTAGGCAGCCACATGGAGCTCTCAGCCCACCCAGCTTCCCTCCCAC--------------ATAGTTCCAAATGTGAAGCGTGGTCCCCAAAGCTTCCTGCCTGTC-CCATCGCAGATCACCCACCG----GTGGCTTCTCCTGCCAGAAGGCACATGAGGTAATTAGCTAGAAGGACACAGCCCAGTTATTCTATGCTTCATCAAGGGAATAAACATAGAAGCAAAATGAGAGCATGAGCAAGGGGAAGAATTTGCAGACCGGTCTCCATGCACCCCCAAAGGTGCTCTCTCGGGTTCTAGACCAATTATCTAAGGAAGAAGACTGGTTCACATCTGGGAAGGGGTTTCCAGATTTTGAGACAATCCTAGCTGCTTTGAAAACCACAGCAGACAAATAGAAACTCATTAACAGTAAAAATGCTGCTGCTCCAAATTCAATTAAATTCAGCTTGGAGATAT-----GTACTCAGCACCAACCTCTCACAGACGGGGTGTTATTTTCAATACCACTTAGGTCATGGCAACCATTTCTCTTGCACTTTCCCCGTCACTG------AATCTACAAAGTGCTGGtgcttttaaagtatttaaaaggaGGCACTGGTGTTAAGTGATGGGATTGTCCAAGAAGCttaattttcattagaaaaatgatCATGTTAGTGGTGGTGATGGTAACATCTACCATTTGTTCAGCACTGACTAGGTATCAGGAATTATTCTAAGTGTTTCACCCAGGGATGCATGTAACAGATATTGTACATGGAACAGGGACACAGAGGGGTCGAGGAACCATTTCCAGTCTGTGGTGGAGTCAAGATTTATTCAGGCACTCTCTCCTAGTGGTTAATCCTTACCACTATGTTACCACCCAATTAGGTTTCAAAGGCCCTGGTCCCCTATCCAGTGCACCCAGcactggtttcttttgtcattagaCATCCCCATCACTGCAGCTGCCTTTGATTTCTTTGTAGGTATGTGACAAAACTTTGAGAATTTCATTCACATGCTTCTCAcccaaatgtttaa---ttttttcaaatcctgaaagaaatcaTGGCCATATCAGCTGAGTGTCACAATCCTGTATTCTTTTACAATGTgcattcatcttttattttcctgaatgaGGTTTGGTTTGCAGCACATAAGACAGGAAGACAGGATTGAAAAGGCAGGGAGAATATAAATCT---CAAAGAAACAAGACACTTGC--TACATCTGAAAGAGTTTAGAG--TTCTTGATGCTCTTATTTtacaaggaaaaactgaaaaaagtaaaGTTTGAGGG------------------------------------------TCACAGGCATACACAAGAAGACTTGCTGGGTTTTCCAAGTCTGCTGTGTAGCTTCGTGATTTCAGTGACCTCAATTACATGATGAACTCTG-----CATTACATAGAATTTGAGCCCTTCAT------TTGGGCTTGCTGCATTTTCCTTCTCCCCAggtcttcctttcctcccttgagAAATGAATCCACATCCTA--CATGTGTGACCGGCCTTCTCCGAGCACCTTATGTACAGTGGGACTCAAATAC-------AGTTTAATTAAGTCAGAGATCATTTACATTTCAAGCATACTCTTAAGCCTCTGAAAAAATCAACTTTCTAGGATATACTGCCTT--CAATATTGCTTCATCCCAGGGGAACCTTCAAGTGACAATAAAATAGATTTCTTTCCCCAGCCAAACCTGAAG-------TCCTGATGGCTCTGGAATAAGCATCTAGATTTAAACTCATCCATGCCAAAAAATTCCCATTTCGTTCAAGAGCTGAGGAAATGAAAA-CTGGAGAAGCAATATT-TGATGAGAATGCCTGGTCATCTAATTTAAAGATCAGGCAATTCTGTAAGGAGGCTAGTGTC----TTTATAAACTGAAGTGTGTCATACCTGGAGAGTTCTTAATAGTTACTGAATGAAGACCTTCTTCCAAGAAATTGAACATTACCACTTTAT

a score=45635
s chr3           153575032 1717 + 160039680 gctCTCCCTCGCTGTACATCAATTGTGAAACCAGGACTCACTTTAAAAGCT-------TTCCTGGGTAAATAGTGAATGCAGGCCAAAGAAATGTGGA-CAGAGAAAAT---------AACAAAGCCAGACAA-----GAATAAGCGGTGGGGAGAT-GCCGAGGTACAGCAGTAACACCACGGGCCACCCATCCTGAAGAGCA-GGCCACAGAAACCTGAGGAT-GGTTTAATTAAACCATTTCTGCCTAAACTACTGTTTCTCCAACCCAGCTTTGTTCCAGAGTAAGTCACAGTGGTGGTTAAAACTGTCCAGGTTTAGATTCCATCCCAGA--------------------------TGGGAGGGGACCCCAA----------------------------------CACCCATCCAGGCTTTAGAATCATGACCCT--CAGCCATCTGGATGTCCTGATGTGAATTCTCAGCCAACAAAGTCTTGTGCAAGGGATGTCTTTAAATGGAGAAACGTCAAGACAT-----------ACGCTCTAACCATATT-----------------AAAGGACCTCT-GACATCCAAGGAAACGAAGTGTCACTTTTTCTTTAACTTGAGGATTAAACCACAC--TCTGAAACCTTGATAAACATGACACGGCCACGCAACATTCCCCTGCA-CGGTTCTGTATTCATA-CGGATAAGAAAATCCTTGGCTTTCTcataataaataggtgccttctgacaactgtcaaattttctcattgcttagatttggagattcaacaaagccagttgccaggcagacatcaggttttgtgagattccctcggagT-----TAATGAGCCTGAACTCAGACAA-ACGCTCGA--TACTGTGGATACCTCGCGTGATAGCGACTTCAACACCTACAACCAGGCGTGT--------CGTCTGTGAAAACCCTGTTTGCTGTGTCCTGTGTAAAACTCA---AACACATTTGTTTTCAAACCTCCTGGAGACACATT-----CTCAAGTAACTGTACATGCAGAGACTGTATGCACCCTGACAACATACTACCTCTTTGGAGATATGTGCTGCCTTCCTATGAATCCATACTAAATACTAAAGGAT-TTTTCAAGTCTTACTTTAAAAAAAATTCGACCCTAAGCATGTGTACCCTACAAACTCTCACACACATATTTTT-------AATTGTCTTCTGGTTCATACTTGGTTAATACAACTTAAACTCACAGAAGCAGCCGGAGGCCACTCACGATCCTGCCTTCACATACACCAACCCTGTAGGAGAGCTACTTGTTCA-GTAATTCCCTTTGATTTCCATTGCTATCCTTTGTGCCCATAATGGGGTCTCTTGCTGCCTCTGAATTTCACTACCTTTCTGTTATGAACAAGAAATGTTCCAAATACCTGGCCTCCTCTTGCATAAGGACTGTCTTTTTAAATTACTACAATTTTGAAAAGTGCCAAGCTTTTTCGATCTATTTAGCAACAGCACCTCT-GAACAGCAGAATGGGAGGG-GGAGGGGCTGTTACCTTTTCCCTTTCCTATTTCAAATTATAAGGGTAATTTAACACTTGTCACAACAAGGCAGCCAGTTCAGAGATATATATGGTGGAAATACGTTTCAGGTTTAAAGTGC-------------CTAGCA--TTATCTACTTTCACTTGTGCTGGTTAGGAGTTCTTACCCCGTCACAACTTCTCCTAATTTCGTATTAGCAAGCGCTGCCATTGAT--GGTCTTTAGAAAAA-----GTTACAATTTTGTTGTTACCTTGTATCTGTTTA-CTTATTATTTAGTTT-----ATAG-ACTTTTCTTTCCTCAACTTGTATTTGATCTTTATtatatttcccct
s HiC_scaffold_1 140394417 1873 + 233722169 GCCCTTTCTGGGTTTGTTTCAATTGTGAATCTCAG-CTCTCTTTAGAAGCTACCAGCTCTCACTAATGAGCAGTGGGTCCAGGCCTAAAAGACAGAGATCAGGCAAGATTCATTGTCCCCAAAAGTGGgacaatgaaagaataaatggaaGAGAGATTACCGGAATACA-CAGTAAT--CAGGAGCTACTGTTACTGAAAAGCACAAATAGAGCCACTTGAAAATTAGTTTAAATAAATCAGTTCTTCACAGATCAGTGCTTTTTAAACCTGACT--GCCCTAGAATTGGCCATCATGCTTGTTAAAAATATAGATGCTTGAATTTGACACTAGACTTACTGAAGCAGAATGTTGTGGGGTTGGGAAGGTACCCAAAACTATATATCACAAGGCGCCACAAATTAATCTGATGCACACTCTGGCTTTAGGGTAGCGATGCTGTAAGCAACAGCTGTGCCATAGTGTAAATTCTTGTCAAGATAATTCCCATAAAATGAATTTCTT-AAATTATGAAATACCAAGACATTTCGATTGGTGATAATAAAACCATATTCATGTAGCACATGTCTTAAAGCACCTTTTGACATCCAAGAAAATGAACTGTCATCTTGTTGTAAATCTGGGGATTAAACTATATGTCCTGAAATCTTTGTAAACATGATATTATGATGCAGTACCTCCCTGAAATAGTCCCGTACTTGCAACAGATAAGAAATGCCCCGGTTGAGTCATAATAACTAGCTGCTTTCTGACAACTGTCAGATTTTCTCAGAGCTGAGATTTGGAGATTCATCAAAACCAACAGCCAGGCAGACATCTGGTCTTATAAGTTTCTTTAGAAATATAATCAAGAGGCCTGAATATGGACAGGATATTCAAAGGACTGTGAATGCCTCAGATTACACTGATTTCAACTTTTGTGAC-AGGGATATTTTTTCCACTCCCATGACAACACTGTTCCCTGCATCCTGTTTATAGTTTATGTAGCCCTTGTTTTCTCAAATCTcccagaaattttttttaatcccaaGTAATTTTA--TTCAGA-ACTTTAGGGACGCCAA--ACACACCACTCTCTCGGCATTACCTGCTGTCATCCTACCAACTCATAATAAACACCAAAAGAGATGTGCaaatcttacttttaaaaaa--tgaaaacaaaaaacttctattCTAAACATGCGCacttatcctttttttaaaaaaaattggcttAAGTTTTATATTTGGTTGATACAATTTAAACTCACAGAAGCAGTAGGACGCCACT------------TTATCATACACCTACC-TGTTGGAAAGCCACTTGTTCCtgtaatttgcttttatttccattaCTATTCTTTGCACTCATAATGGGGTCTCTTGCTGCCTCTGTGTTTCAGTGCTTTTTTGTTATGATCAAGGAATATCCCAAATATCTGGCCTTCTTCTACATAAGGATTGTCTTCTAAAATTACTACAATTTTGTAAAGTGCCCAGATTTTGCAATCTATTTAACAATGGTTCTTCCAGAATGGCAGAACTAAAGGGAGGGAAGGCCattaccttctttcttttctttgttaaacTACAAAGGTAATTTAACATTTGCTATAACAAGTCAAACAGAACAAATATATACaaagtagaaatatatttttaagctaaagtacaaaatttttattgttaaaattttacataGTTTTCTTTGAGCTCAGTTTGGCATGTGCCTCCTTTGCAGTTTTTCCTAAGTATAGTTTAATATGTGTGGCTATTGaccatgtttttttaaaagttttttttaaatttttactattgGCAGAtatcactgtattttattttttcacttccaTCATAGAAATTCTCACTGTAAGAAGTATAATTGGCCCTTATGATAGCtacctt

a score=37402
s chr3           153579711 1727 + 160039680 TCAGCTGTGCAGGGC-CTGTTTGCAAC-TTGGCAGCATTTTATTCCCGGTAACATTTTACATCTTTCTCCAAATAAGGCATTCAATTGATTCATTTTGATTTGAGCTTATAGAAAAGTTCTACTGCACAGATAATGTAAAAAGAGCAGATAATCCAAAATTTGAATGCAGATGGCCTGAG--AGCACCACATTCCCCATGAA-TTTGCCATTCGGCTATCATTTCTTTCACATCGATCGTGCACTGAAAATATTTTTTTATTTCTCCTAAAGCACAAACTACCCTGGGGGTGAGGGGGTGAACTGGGACAG-GTAATGACCATGACTGAGGCCATAGGTGACATCTGCTACACCACATTTACAGTGGCCACTGTCTTTAGACTGATGGAGCTTCTGCAATAGGCTTTAACAGGACAGACCCACCCAGAATG------------CTAGCTGTCATGCAACCTACATC---------AACAGGGCAGTTATCAAAA----CTGTTTCCC--------------------CTGAGCTACCACAGCAAGGAACAGCACACAACGCCCCTCCCC---------TTTAC-----------CTTTATGAAGTTAGTAACTGCAACTTGGTG-TGGTTTCTTGTGTAGCTCCTGCACCGTGTGTTTTCGTGGTTTGGACTCA-ATTACCTTACAAAGGCAGGCTCTCCTGCCATGCCCACAGGAGCATCTCCACATTTCCTATGTGGGAGGCTTTTGGATTCATCTGTGAATTGCTAATAAAAGCCAATCATATCTCTAAACTCAATATGTTGAAATTTTATTTTCTGGTATATCACAGGGCAACAGCAGCTGAATGAGAAATGCAGGGGGTGGGGTGGGGGGTGTGATAAGACCAAAAATCTTACGGGCTCGGAGAAGCAGTAATGAGCTTCCCAAGGTCTGTGGGACAGCCTTGAATTTAGCTTTTGCAGAAGGTTGAACCTGGTAAAATAAAAGCTGGCTATTGTCTCTCCCCTACCACATTGCCACTGTCAGGAGGGAGCGATTTCTCAC-AAAACAGCTTTTGAAATTTTACCCAATGCTAACTCTGCCCACTGCTTACCAAAAATGGAAACAACACAAGAGAAAGATAATTGTCATTTTCTTCTCTCACAAAAGAGACTTCTAGCAAAGTGAACAGGGGGCAGAAATCAAAAACTCTGTGTGCACCAGCTCTGGCATCCTGATGAAGGGTTAGTCACTAATCCCCTGATGGTTACTTAATTGCAGCTAAACACAGCACCACCCAGCTTAAC-------------------------------ATTCCCCTCAGAACCGCTCAGGTCTGGAAATAGCAACTGTCCTCAAAGCACAGGGAAGAGACACAC-CAAT--CCTGCTGTTAGCCTCTCTCT--CCACAGCATTTCACGGCTGTAAGGTCTCCTGGGCACATTCTAACAGTCCCTTCCACTTCCTGCGTTTTCTGCAGAAGCACAAAAATGCCAGCATTTGCCAAGGTCTTGAGGAAGAG----------------------------CCCCTCCAGACCCAT-CTTCAATCACAGAGAGCTCCCAGTCCATCTAGCAACATTTCCCTCATAACCACTGGTTTAGTCATGGAAGGGTTTTGAATTAAGACAGTGA---------------GTGCTGACCACT-----CTTCCACAGACTTCCACTGAAG-----------ACACAAGGAACTGGCTGAGATCAACAGC----------CCAGAACACTGCCAACTACA-GAGTCAGAGGACT------GAACACGTGCCTGAGTC------TTCATGG--AAAATGTTTGGCTTCC-----TTAGAGTCTTTGTAGCTAGGAGGGATAGCTAAACTGTATGGCAGTATAGTGGCCA----TAATGCAACT
s HiC_scaffold_1 140396624 1838 + 233722169 TTAACCTTGCAGGTTACAGTCTATAACCTTTGCAAGATTTTATTCCCAATCTCATTTTATCTGTCTCAGCAAACAAGGATTTcaactgattctttttttatttgccCAGTAGAAAAGTACCAAAGCACAGAtaacacaaaa-gataaaacaatgtaaaatttgCATGCAGATGACCTCAGTAGATACTGCTTTTTCTACAAAATGTCTCATTTAACTGCAATAT-GTTCACAGTGACCCAGTATTAAGTATGCTTTATATTCCTTGTCAGCACACAA--------------GACAGGATTATTGAGGGCAGAGTGATGACATTAACACAAGGAGTAGGCAGCATCTGTTCCATAAATTCATGGGAAAACATTGTCTTATAGCAAAT-----TCTTACGCTAGACCCCAGCAAATCAGACCCCACCAGAATGGAGTCACTCATGCTAGCTGTCACACAGTTGACACTGAGCTCAGAAACAGACCTGCTTTCTAAAAAGTCTGATTCACAGCAGCCAGTCAGAAGGGGTCCCATCCACCTCAGCCAG-AATGACAACGAACTCCCAACCCCAGGGTTTATTCTACACCCAGAAAAGCCTCCTGAAGTAACATGATGCTACCCGCTCCTGGTTT-------------TGCACTGTGATATTTCCTTGCTCCTGCTCAGACTACCTT-CAGAAACCCATTTTCCTGCTGTGTCCA-GGGGgcaccttttcatttctta----gagTACTGCTGGATTCAT----GAACGTCTAATAAAAGCCAATTAGATCT-TAAACTCg---tgttgaaattttgttt-ctgacACATCATAGGGAAA-GTCagcttaaaataaaattcaggacA-------------GTTGTAGGCCTGCAATTCATA--GGCAGGGAGTGGTGCTAACTAGATTCCTAATGTctctaggatggccttgaattgaGCCTTTGCAGAAGGTTGAACCCACTAAAATAAGAGCCA-CTATTTTCCCTCCCCTGGCATTTTGCCATTGTCAAAAGGGGATGATTTCCCACGAAAATAGCCTTTGAAATTTCATCCAACGTAAACTCTGCCCACTGCTTACCAAAA-TGGAAACAACACGAGAAGAAGATAATTGTCATTTTCTCCTATAATCAAAGAGACTTCTAACAAC-TGAAcaggggagaaaaataaaaagcatagcaTGAAACAGCTTTGCGATCTTGATGAAGGCTGAGTCACTAACTCCACAGCACTGCCTTCACTGCAGCTAGGCACGTCACCATCCAGTTTAACACTGGTTTTCGTCCTCGTGCATTAGAGCACTATTCTCCTCTGATCCACTTAGGTCTAGAAATAGCGACTGTCCTAAGAACACAGGCAAATTGCATGCTCAATGGTATATATTTAGCATCTCTATAGCCATAAAAT-----GGCTTCAAGATATTGTAGGAGCATTTTCATGATCCCATCCA------------TCTGCAATAGCATAGAAA--CAGTCATTTGCTAAGGTCATAGAGAAAATTATTAGAATGAGAATCCAAACTTACAGCCCTTTCCAGACCATTACTCCATTTGGAGAGGGCTTCTACCTCATTTCCCTCTGTATCCCTCTTAATTGCTAA-CTGGCCTCTGATGGGCTCTGAG--AATCCTTTGAAGGATCCTAAGAGCTGTGCTTcacacttcctccttccccagaATCCCACTGAAAGTTGAGTCAGTGCACAGGGAACTGATTGTACCCAACAACACGTTACCTGCTGGAGTGCAGAAAACTAAGTAAGTCAGAATGCTCTGCAAAAACAATTGCCTGTGCTAAAAGATGCCTGGTTAGAATGCCTGGTTTCCCTGCTTTGAACTGTGTTCGGCCA-AATTTATAGCT-AACTTTATGGCACAAGGGTAATCAGTGTTAATGTAACT

a score=54017
s chr3           153582002 5429 + 160039680 [encoded data, 6610 characters]
s HiC_scaffold_1 140398566 6267 + 233722169 [encoded data, 6610 characters]

a score=20750
s chr3           153589652 746 + 160039680 CCAGGACTG------GCATGAAACAGATCCACCACAAACATCTGCCCA-GTGCCAGCAAAGAAGGACTTCCAAGTAGCTCAAGATGGCCGCCTTAGCTGTTGGTGTTTCAAGAGGCCAGGC-ACTCCTGCCTGCCAATCGCCTCATGCTGTGCTGTGGGCATTGTCTCGTGCATTTTTCATTCTCCATAATAGCTTCTTCTTATCATGCACTTTATTGATCTGTCTGAGCAATGAAATTTATTATTTATTAGATTTCTGTAATAGCTTTGCTCCAAAGA-------GGGATATGCAGGGACTCCAAGGCAC-AGCAAGGAAGAACAGCACAAAGGATGCTCAGAGCA-GGAATGGGGAAGACCACGGTTCTACTGTGCAGGCTGGAAAGAAACTGCAAAGGA--AGCCGCTGCCCTCAGAGAGATG------GGAGAAGCTGCAGGA--------GCCTGTGATAGCCTGTCTCAGGCCAGTCCCTCCTCCT--------GGGCTT-------GTCTGACAGGAAAACTACCAGGGAAAGCACTCTGAGAAGCTAAGAGCGCACCTC-TCTGCTAAGTAGCATTACTCCATAATAATTAACCAGCATCAATGTGGCTCATTCACAAA-CAGGAA---------ACCCAGGGAAGGGGA-CAGAGAGTTGACTGTGGAAACCCTCCTCTACTAATGAC---AATGTTC-TCTACGGTCAAGGCCTGCCCGTACTC-------------------------------------CCAA--GACTACAAACTCTGAATTCCCACATAGACTGAAACACATTCATC--------AGCCCTAGCAGGTGAGTGGGAATTCAAT
s HiC_scaffold_1 140408430 838 + 233722169 CTAGGACTGCACCCTGTAGAGAAAAGAGCTTCAGCAAAAAACTGTGTGTGTATGAACACATGAAGGCTTTAGAATACCCCAAGATGGCCATCCTGG-TGCTGGCATTTCCAGACACTCGGCTCCTCCTAGCTGAAGGTTGCCTCATGCTGTG-----GGCATCTTCTTGTGCATTTTTCATGCTCCATAATGGCCTCTTCTTATCATGCATTTTATTGATCTGTCTGAGTgatgaaatttattatttattagatTTCTGTAATAGCTTTGCTCCAAAGAGCTCAGTGGGATACGTAGTGAGTCCAAGGCAAGAGCAAGGAAGACCAAAACAAAGGAAGCACAGTGTGTGGACTGGTGAGGA----AGGTAGAAAGCGCAGGCTGCGAAGAAACAACAAGGGGACAGCCACTGCTCCCCAAAAGTGGCCGCCAGGTAAGGCATCTGGGAGATTTGTGCCAGTTCCAGCCAGTCTCTG--CACCCCCTCCTCATCCACGTGCAGGTTTCTCAACAGTATGACAGGAGAA--AGTATGGAAAGCACTTTGAAAAGATAAACGCATACTACAGATGCAGAGTAATGTAATTCCATTATTATTAACTAGCATCAACTTAATTCATCTTTAAAGCAGGAAGTATTTCATATCTAGTCAAGTGAAGTGGAAAGCT---TGGAATATCTGTCGTCTCCTAGTGAATGGCATGCTCGTCTACACAAAGGACCAAaccacattcattttttttccacatGATAAGTGCGTAACAAAATTTGCCAAACAACTCCAAATCTTACATTCCCATTTCAA--GAAACATATTCATTCTGTCTGGAATTCTAGTGGGTGAGTGGGAGTTCTAT

a score=12708
s chr3           153591436 410 + 160039680 CTACTCACTCCACGGTCACTAAATTAGAAAACTGCCACTATTTTAAAGGAGTCATTGTCATTGCT----TTGTGTCTGCTTAATTAACAATTCTGATGGAACAATCGAGCTTTCTTATTGAAAAAAAATTATGGTAGAAACTTGATTATGCAAACTTAATATTTTATACAGAAAATTGCATTTACATACAGAAGCTAAAGTAAATAGTTATGAATCTTTAAATATTGCTTCATTAATCAAAGCGCTCCACAATCAGGTTGAGATTAAAGCCCTGTTTACATTCGTAAACAAGTTTTTCGAAGCCTCAGCCACACCAAAATCACTCCATCGCTCATGTTTTGGTTCATCGATTTGTAAACTTTGAATACTAAAGATAAGGAGTGAACTCTGATGGCAGGTGTGAAGATTGGAGGG
s HiC_scaffold_1 140410473 403 + 233722169 CTGTTCCCTAAAAGTTAACTAAGTCAACAACCTGAAATTCTTCTGAAGAAATTATTGACAAGATCAAAATGATATCTATTTAAGGAATAGATTTCAGGCAAAACCTGAGCTTCCTATTT---AAAGAGTCATAGTGGAT-CTTGATTACACAAGCTCAATACATTATCTAGAACACTGCATTCATATACAAAAGTTAAAGTAAAAAACCATGAATTTTCAAATGTTCTCCCATTATCCAAGGAGATTCACAATCAGCGTGAGATTGTATTCTTG-TTATAGTCATAAACAAGTGT---AAAGCCTTAGCCATACCAAAATCAGT---TCACCTAAGTTTCAGTTTACAGACTTACAAATTGGAGACACTGGAGATAAAGAACATGCTCTGCAAGTTTTTACAAAGATTAGAAGG

a score=20333
s chr3           153593061 1133 + 160039680 AGGGATCTTCTCAACTGCAGCTCTAAGAAAGAAACTGCAGCCTTCGCTGACATCTGGGGACAGCATGTTTACTCACCTGACAATCACAATCACAAATGTGCATCTGGACAGTGACATTGG--GAATATGCCTTTTCCCCTCTG-----------GAACAAAACATGCTTCCTCCCATGAAAGTTGGTG--ACCACAAGCTGTGTCACTAAGTCTTGGCACGCCTTCAGGAAGAAGCCAGGGCTTAGGCCCTGATAACACGGGTTTACCCACCAGCATCTATGTAAAGAACCTGGCCCATCATTATGCAGTCAAGACAAGGGGCCTGTCTCTGAG--------GATGGGTTAGCTTCTGATGGTCCAGGTGGGGCCCTGCAGAGGACTCAAACAAGGAAGCTTTTCCATGTAAATTTGATTGACTTGCTATTGTTGTTTATATACTCTGTCTTCCATGGATCCTTTGGGAAGCAGCTAATGAGACAGCAACCACAGGCCTGATAAATTAGTCCCAGAAACTCTAGTTTAAAAACAAGACTGGCTACTCGATTCCTTCAAAGCAATCTCTGAAAGCAACG---CAGTGATTCTCATGGCTGCCTCTGTTGACTACAAAATGTACTCCGAAAATTGAATTTTCTTGGAATTGCTACACAGGGAAACTCAGGTGTGGAGCCAG-TTTATAGACTGACAGCCGGGATTCTAGGAAGGAGGTATGGGAAGATGCAGAGCA---GAGAGCTCAGCAGATGGGCACCTGCCTTCTTGCCG---------------TACCAAGCACAGATTTCTGAATTGCTTTCTGTTCCCCGGGGAGA-CCCCTGAAATCCCACTGGGAAAGAGCAGCCC------------------TGGGCATTAAAG----------------------CAGAAGGA--------GCTAGTGCTGGTCC--TCTGCTTAG------------------GGATTCCCCTACACCACA-------GGTTGGTTGGGT----TCTGGTTGG--GGGATTATTcagtcctg--------------------taggtctaacccagggcctcatcaatgcta---agcagaaatttactccagagcacacattccccagATAACAGTGCAGTAACAAAGACAGGGTCTCTTCT-CAGAACTGGGAGGCACAGCAGTGTAGGGGGACGCCCCCAATCTGATTCTGGGAGAGGGTGAAGACAGAGGC-------TGGGAGGCTGAACCCCACCTGGAGGGACACAGAAGGTAGGAGGACAAA
s HiC_scaffold_1 140411893 1229 + 233722169 AGGTCTCTATTTACATACAGGTCTAAGGAAACCATCCTGGCTTTCATAAGCACCCAATGTGGGTGTATTTTATCACTT------CACACTCACACATGTACATCTGGAAAATCATATTTGTGGGgtaatctttctttcttctaaaaataactctgaacagattttgtttttcccta-gAAAGTCAGGGCTACTAACAGTTGAGTGGCTGATTCATGATACTCCTCAAAGGAGTGCCCAAGGGTCAGGTACCA-----------TTGCTCCCTGG-----------AGAAGCTGGGTTGG------------AGGAAAGGTGGGCTGCATTTGGGTTGGGAGGGGGAGGTTAGCT-CTGATGGCCTAGGTAGGATTCCTCAGGGTACTATGTAAAGTTA--TTTTCAATGTAAATTTTATGGATTTGCCATTAATGCTTATATTCTTCCCTTTTCATAGACCCTGTATGAGGCAG-------GAAAATTAACTTATTCCTGATAAATTAGTCATTGAAATCTTAGTTAAAAAGCCAAC---actattaaattatttcaaaacaaccTTTGAAAGCAACAGCAAAGTGTTTCTCATGGCTGCCTCTGTTTACTCCAAAATGTGTTTCCAAGATTGCATTTTCTTGGAATTGCTACAGAGAGAAACTCAGGTGTGAAGCCCGATTTATAGAAAAACAGCAGGGGAGACTAGAAAGAGGCCGATGAAGATGGGGAGCATGTGGGGCTTCTGTAGAGATAGGAATGGCCTCTTGCTATTATTTGTCTGTGTCTGCAAAGCACAGAGGCCTAATTTGTTTCTCACTGGCCTGGGAGAGATGCTGAAATCCCACTGAGACAAAGCAGCCCTCTGGCAATTCTTCTTCATGGATATTAAAATGTGACACCCATTATTCCATCCCAAAAGCATACTTTTGATTAGGCTTGGTTTaatctgtttggtttggttttggttccaTTTgattggtttaatttgcattgagttggtttgtttggtttgctttgtttggtttggacTGTTTGGTTTGGGGTGGTTTGGGGTGGTGtgatggattgaacccagggctttatccATACTAAGGAGCAGAAGTTTCTCCTGGAGCCTAGTT----CAGCTAAGCATGAAGCTAAATACATGAGGCCCAAGATGCTAGATTGGGAAACAGAGGAGTCTCGGAGGA----GCCAGGCCACCTTGAAGGAAAGGTgcagaaaaattcacaaaaaagaaaggcagagaaccACCTGAAAGGACAGGGAGGATCAGGGGGCAGA

a score=35324
s chr3           153599879 2042 + 160039680 CTCCATTTCACAACCAGAGTCTAAATAAATAAGTGCAA------------ATGGTGAAATTTAATAACGCCAGACTCACGCTTTCCCCCACCAACTGATTACAATTCAGGAGGTTCACCTAATCATAGCTACATAAAATTAAATTATTTTGCAAAGATACTCAGACTTCCAGTGTATTGCCAGAGGAACCCAAAAGCTCAGCTAATAAATTAAA-GATAATTGGAAAATATTGTAGACCTTCCCCCATGAACAACATTTAGGGATTTTTTTTTCATCCTTCGTACCTTCATTCTATTCAAGGTCCATAACCATGGCTTTTGAACACAGCAAGA---GAGTGAATACAGACTGCTAAAGGCACAGCGGAAGGAC---------GTGTGGCCCTGACATAAGATGTGCTATGATCTCAAAGTGTTCGGAGGTAGCTGGTCCAACTTCTCATCTTACCGTGTGCAACACTTACTCTTTAA-GGCTGGAGAGGAGTCACTGCTGAAAAGTCACTGCGTTTTCATTAGAAAAAAAGATAAAGGACCAAGTAGCT--TTGTCCCCATTATTTC-------CCAGGTCCTGTTGTCAGAGTAAACACAGGTGC---AGAGCCCAGAGCTTCTGAGACCACACTTCTGGAAGCAAGGTGGAGCCGGTGAGTGAC--AGTCAGCTCACATC---CATTTCTCGGCCTTTTGAGGGTGATGTGGCAAAGAGTTTTCCTTTTCACTATTACTTTTTAGTATATATTTTTAAGAGGCT---GGCCTTTGGTCTCTGCTACA--TGGGCCTCTCAGCTCCT--TTCTTCCGAATCA----------------GTCACATGAAAGTGCCCAATGCATGCATTGACATTTAGCAGCTCGCTCCACCATGCTGACCTTTCCATACGAGGAAGGG-AAGTAAGGACCATGAGCATCACTCTCGGGTCAGCCACAGCCGCTCCAGGCCTAAGGAAGAGGCA-----CTCGGGAAACAATACCCACAAGGGACTGCCTGCTACAGAGATGATACACTTCAAGTGTGTTCCTGCACAGAGGCCCTTCCTGCTTAACCAGGCCCTGCAGAAGCACACACCAGCCAGCCTGATGACAGCACGCCAAGGCTGGTTTCTGA----ATGCTCCATCCAG----------------------------Ccacagactc---atggctggcagagaagtaggaaagctttaccctaacataggaacctgcctcagaggtgctcagactggaggctggaggcaggtggTACAGGGAA-TGCAGCTACTCTGATGGGCC---Aggttgtctttagctagtgcgtggggaagaaaaaaagaaaaaaga------aagctaccaactattaatcaagaactggccatctagggccaatta-ttcagaagttattgtttggctactattattagaCACTTAACTGAATTGTTA--CTGATTTCATTTATGCCTATTATACAACA-----GCTAATGGAGTATTACATCATAGGTAAG-GAccctgtggctgtgagacaggtcactatgtagtccaggctgctcttgaactcactgaaatctgcaaacttctatttttacacgtgGGTAGCACCATGATCTGTTGCTCTAC--------TTAGCCATTCCGCCCTCAATGAAACCAGAGCGAGTG-CATCTGCA--ACCCTGCTG---GGTCTAA--------TGGTAAA----GCCGGAAGCTCCCTTCCACACCCACCAAGCC---TTCTCTGTTCAGGTATCTGTCGCAGTTTATCACATCATAATCAGCATCAGCATTGAGGCTTAGAAAACTCT---GACAGGCAAGAGCCCCTCCAGG--CAAAATCATCACTTACGTTGTTTCATTTCATACTTATAAACTAATTCTTGGCAAATATTGGATCAAAATTTACTGTCAGCTAAAATAAAAAAGAATAAGCCCATATTCTGTGTGTTCTGATCAGAGAAAGTGCCTTATATTTACAGAGAGAACAATTTTCCCAAATGTGAACCAAGTAGACTATTTGAGGAATGGATAATTTAAAA--TCGTTTATAAGACGGCTC----------------------GCCACTCTTCCTACTGGGTTTCAAAATGTGCTGCTGTGGATTAGTCCCAAGAATAGAACGGAAGTGAAAGAAAATGGTAAGTCAAGTCAGACAG----AAGGCAGAGCAGAAGCAAACC
s HiC_scaffold_1 140417343 2020 + 233722169 CTATatttcacagctgaattctaaataaataaatccaagcCAAATATCATAATATGAAATTTAATAATGCTGAACTCACACTTTGCCC-ATAAACTGATT-CAGTTCAGTAGCTCGGCCTCACCAGAActgcataaaatta-----ttttgaaaaactacTTGAACCCTAAGTACGCTGCCAGAGGATCTCTCCGGCtcaactaaaaaaacaaaagataatttgaaaattatgGAGATTGTTCCCCATGCACAATACTTAGGTATTTTTGCTCCTCCTTTT---CATTCATCCTATTACGGTTGCATAATTGCAG-TTTTAAATTCAGTAATAACAGAGAGAACACAGG-TAATAAACTCAATGCAGAAGAAACcaaatatagtatttttttaaaaaaagg-atgatcAGATATCAAATTGTTCTTAGGCAACTGGTCCAACTTCTCACCTTAACATTT---ATATGTACTCATCAAAGGCTTGGGAGAAGTCATTGCTGAAATGTCATTGAATTTTCATTAGGAAAA--GATAAAGGAACAACTCACTGGCTGTGTTTCTCACTCCTGTGGTACTGGCTCCTGTAACGGGCACAAACAAAAGTACGGGAGAGTG-AGAGCTTCTGAGCCCACTCATCTGTAAGCAAGTACTAGCCCTTTGGTGACCTGCTAAGCTCTGATCTCCCACTTCCAAATCTTTTGAAGATAATGTTTGAAAGGATTTAGCTTTATACttttacatt--aatataaa-----aaaATGCCATCGGCCATTGATCTCTGTTGCAAAGAGGCCCCTCTGCTCCTGCTTACTTGGATTCACAAGACAAGGTTCAGCGTCACAAGGTAATACCTAATGCATGCATTGACATTTAGTAATGCACTTC-CCGCCCCGACCTTTCCACATAGGGAACTGCGAGTGGGGGCCACGG-------------------CACAGTT-CTCCAG-CATAGGGAATGCGAATGTGCCCAGAGCAATGACAGCCACACACAGCTGTCACCTACAGAGACCACAGAATGAAACAGTGCTCCCAGACAATATCACTTTCTGTCTAACCAGGCCCTGCGGAAAGAAACGACAACCAACCAAATGAATGCAAGTAAAGGCTATTTATTCAGATCATGCTGCAGCCAGGAAGCCAGCCGCGTTATCACTTGTGTTTCAGCAGAAGCTGGAAGGCAGGCAGAGAAGTGAGAAAGGTTTGTCTTGAAAAAGCAAA--GCTTCAGGTGTACCCTGAGGAGAGGCTGCTG------GACACAGGAAGCTGCA--------GGTGGGCAGAGAGGCTTTTCCTGGCTGGTCCTGGGTTAGATCTGGAAGGGAAGGGATTGGAGAAGCTGCTGGTCAGTAATCAAGTCCAGGTTTCTTGGGACCAGCTCTTTTAGCAGTGACTGTTTAGTGA-----GCTAGAGA-----------TGGTAGCCTGGCTTCCTGAAGGCTGACT-CACAGCAAGCTGGCTACCTGGGCTGTTTATTGCAGCTAGGAGATGCTGTTTTCACTAG-CAGAGCGCTA-------CAAGCTGTGGGT-----------------CAACATTCCATCTTTGTATG------------TGATCTG--GCTGTGCCTGCATCGTTAGCGTTCCAGCCCTAAGTTAAACCAGAGCAGGTGTCATGAGCATTATTCTGGCGAGCAGTCTAATTTGCACCTGATAAACTCTGTCTGAGGCCAGCACCCTTCCCCATCCTGCCCTATTCCACATTTGGGGTCCTATCAACTTGCAACATATGCGGATGACCACCAGTACACAGGGCT------CTCTTCCTGCCGGCATGAGCCTCTCCGGGCCCCAAACCATCATTTGTGTTGCTTCGTTTCAAACTTACAGTC---------------------TCACAATTTACACTCAACTAAA----------------------------------------------------------ACAGAGAGAACATTTATCCTAAAAGTAAACTAAAGGGGATATCTGAGGAATgggtaatttaaaaactaatttgtaAGACTGATCTAATACCGCTAGAGCTTGGAGAACCACTGG---TACTGGGTTTTAAAATGGACTGCTGTGGTTTGACCCGAAGAACGGA--GGAGAccaggaaaagcagaaaataaagtcAGTTAGTTATACAGTAGGACAAAAATGGACC

a score=20815
s chr3           153602826 1354 + 160039680 GGAGCAAATGCTCTT--ACAGGCACCATGATTTGACTTGAGTTA---------CCGGGGAAAT-----AGGCTTTTAAACCTCCAAACCATGATGTCCCTAAGA---------GGTAAGCAAGGTTCTACAAAGTGTTGCATTTCCGCTTTCCAAAGAGAACACACATCCCAGGCCAGGGTGAATATATTTTGCTACAATAGACGTCATTCTGCCTTGA-GTCCTGACCTCAAGCCTATGGGGCCTGAAGCATAATTGCAGCTGACTGGGGTTTGCCCTCCAGATATACACTTCGTTAATGAAGTCATGAAATTATATGTTCCACAAATGAGCATTAGCACTGCAGGTTTTAGACCATTTCCCACTTCTAAACACAGATCCTAGAAAGCACAACCCTTGCTAGGCTAA---AGCACAGGTATTTCCCAGCTTTTACACATAGTCAAAGTTGTAAACTAGTTGTGAACAGATGATGATAAGCAGGTAAGtagatgatagatagatagatagatagatagatagatagatagatagatagatagatgatagatacatggatagTTTACATATACAATATTAAATGGATTCATGAGAACAAATAATACTGG-AATATACTAGTGACTTAGTAGATGATGCTGGCTATTACCACCACTTGACATTT-TGAAAAGCAATAATgaggccagccaagattgctctgagaagagtgcttgcagctaagcctgggaacatgagtttgattccagggaactacatagtatctagcgagaacttgttcccacaagttgtcctcagaactccatacatatcatagcatgTATCTGCCTTCTCcacacacatctatgcatacacacacgcacacacatgcacacacacaAATAATAGAGACAAAGATCACTAGAAATTTTCCCCTAGTAAATTTTAAAACAGAAGCTAGATACTTGCTCACCCAATCACTGTCA-GATGGCAGACTATACTTCTGCTAAAATCTTTTGCACTGGGTGAGAATTAGATAAAAATCTGTGTCTAACACAATGACACAGTCACACACATCTCAGGTCTAAAAGCCAAAACAC------------------AATTTGCAAATGTTTGCTGAGTGGCCCCTGTGCTGAGCAACAAATCGG-AACAAAGATGCAGAGGTGGGTCAAGGCAG-CCCTGCCCTCGGGTGCTCCACTGGCCAGAGGGAAACAAGCCTGCACACACAGGGGCAGCTTTAACTCCACAAGATGAGCAGTGTGAGGCAGATGGATCTAGAAGTTC-CAGGAATCTCCAATGTGGGAGTGATTGACTGCTCAGGCAGCAGTCAGGAAAGGTGAACCCTCAGCCACGGTGCCCACACCAT----GCTCGGTGTTTACAGACGTTGTCCATCTCAGTGGCTCAAGGTCA
s HiC_scaffold_1 140419622 1077 + 233722169 GGAGAAACTGTTCTTTTACAGGCATCATGATTTAATTCACAGCATACTGAAACCCGAGGGCATTGCTTAAAGTTTGGCACCCCTGAACTATAATGttcttaaaaattctaaatggCAGGCAAATCTCTGTAAAATGGTCCATTGccacattttaataagaaaactcACTTTAGTTCAGAGC-AGTGTATTCTGCTACAATAGGCATCTTTTTGCCTTCACGTCCTAACCTCAATTCTCTTGGGCTTGAAGCATAATTACAGCTGATTGGTGTTTA-CCTCCAGATACACATTTTGTTAACAAAGTGATGAAATTAAATGCTTCACAAATGAGTACT-----Tgaaggttttatatttttttctcc--ctaaatgAAGACTCTAGGAAGCACATCCCTTGCAAAAGGAGCTTAGTACA-ATATTTTCCAAGTCTTCCATAAAGTCACAGTGGTAAACCTGTTG-GAACACCTG------------------------------------------------------------------------------TAC----------TATATATACTATACTCTATGATTTCATCAGAGCTAATAATACTGGAAACATCCTACTCAGTTAGCAGGCACTGCTG---ATTACTGTCAATGAATTTTTCTGAAGAGCAACAAAGA-----------------------------------------------------AGTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGTTTTCCCT--GGGAATTTTAAAAGGTGACATTGACA----CTCATCCAGGCAATGTTAGGGTGGAAGACCAAACAGCTACTACAATACATTCCAGTAAGTAGAATTTAAATATGGACATATGCATGAGACAATGACACATCTGCATTTATCTACAGATAAAAACTCTGAATATCCTCtacaattttaattaattttgcaaATATATACTG-------CCTGTGCTGGACACCAAGTTAGTGATAAAGATACAAAGATAGGTAAATACTGTCCCTGCCCTTAAGCACTTCACTGTCTAGGGGGAAATTAAACTGGACAAACA--AATAGCTTTAATACTATGTGATAAATGCCACAAGATAGATTGATCTGGAAGTTCTCAGGCATCTCAAATGAGAATGAaattaattctttggggaaagtCCTGGGAAAACTGACATTCAGTCATGGTATTTCCACCATTAGGGCT---TGTTTATAGCCGGCATCCACTTTGATTGACTGGGGCCA

a score=45246
s chr3           153605232 1835 + 160039680 AAGTCATCCCAAGTAGGAGACATGGAGGGGAGGTGGAGGGCTCTGGGAAAGAACACGAACCCCACAGGACAGTCATCTTGTCTCTGAGTTTCCCCAAAATGTCAGGCTACATGTAAGTC--AGACGTACTCTAG-----AGACAAAGCGAATTCTC--TTTCAGAAGAAACACACAACATTAAGACAAATTTCAATATTCCACGCTGTCTGCTACCGGCGAGACAAGAAGGAAAGCCCCAATTGGGCTGCTTTATCCCCGCAGGCTGGGCGCAGCTGATTTACTTTCGCTGAGATCATTCATCTATCAGGGCTGAAAGCATAAATGTCAGGGAGGCCATAATAAATGTGTACCAATAAAGTCATTAGTTATGCCTCCATACCACGCAGAGAGGAGACTTTATCAGCCGTCATGAGCATTAACTAC-ACAATAACACTGGAGAAACGCTCTCTGTG-------------CGGGTGGGTGAAGAGAG-----------------TCAAGGAAGGGGTACTGGGACCTACAAGCGCTCTCAGTGGGTTCGGGAGA-CAGTGGG--CTCGGAGTGAA---GGCCCCTTTCAGATCATAAATGCAG--TGTTTTCACACAG--------CCTCTTAGATCACTCTGTCATTGTTCCCG------------------AGACACATGTGGCTTATTAGCCGACGATTGCCCCACATTCCCGAGAGCTATTATCAAAGTGATACGGTTCCCATGCTAAACCAGCATACATAAACCAGCCTCCTTAGACCAA--GAAGC------------AGGAATGG----CAGGATAA----TGACCCGGCTGA-GCTGCCTTTGGTGGCCTTAACTGTCCCTGTAGAGAGCGG----------CGAATCTTCCCGTTCCCCGATGGGTCTGTTTCCCCGCTC-TGTGTTTGCTGCTGT--TCTCTTGCTTC--TTATCAATAGCTAATCTCAGAA-----------------------AAAAGAACTCATGCTAGACTCAAAAGACACAGCTGAGCCTCTCGGCCCCTCACAGGAGATCCAATTGAAGGCCAAAGTCACCGGGTTTAGATTGGGAAATGTGCACTGTCCACGCACAGGACGAGGGATGATGGAAGGCATGTCCCCCGGGGAAGAAGGTGTAAGATTCAAGTGTATGGTTTCAAGAAAGCT----GACATCC--------TTTTTTGTCTCCTAGCATGA-AAATGTTG--------AGGTAGTCTGAAAAACGATGCT-------TCTTTGAATAAGCAGGTG---AATACTATCCATCAGGAGAAAAAAAAAACATAAAAAAACAGAATTAAAAGAGAAGTCCTCAGAGGAACACAAGTATCACTATGTTGGACGCTTCTCAGCTTGTG-TCCCAATCCACAAACAAGGGAGCAGCCATCTGTCCTGGTACCTCCCTGCTCCACAATACCAGGCTGGCATCCACACTGCCTGAAATAAACTGTGTTTACCATCTGAGTCTGCTCCCATCATGTGATGCCCAGGTTACTACCAACTACATCTCCAGAGGACCACAACCAGACCAGAGCGTTCTGCTCTACAG------AATCCACTGTTCTTTAAGAGAAAGATGGAGGGTGTAAAAATCTAATTTTAACACACAGCAAGGGCTATCCTGTCACAAAGAACTTT-TTATAGGGCTGGTTTGGGGAAAATCTT-----TCTGCCCGTGTAAGTCCTTTGTCCCTTTAGAGATTTACTAAGAAGCTTTTAACAACCAAAATCAATCTCCGACACTAGAGATCTTTTGTTTCATAAAATGTAGAGGTATTTGTTATAATCTGTTTGTGTTCAGGAGAGAATCGATGCGCCATTATTTAATGTAAGAGACCAAAATATTTCAACTAGGGGACAAGCAGCCAGATGTCCAGCTTACAGAAAATACTCACGCCAAGTCCTAGC-ATGATGATTCTAGCACTTTGGCTCTGTATGTTTACCTTAACTCTGTATGTGT
s HiC_scaffold_1 140421191 1931 + 233722169 AAGTCCGCCCAACCAGACCACAGGAAGT--CGTCAATGGTCCCTTGGAAAGCAAACAGATCCCAGACAAGAGGCATCCTGTCCCTGCGTCAGCAAGAAATGCCAGGCCAAACATCAATCCCAGATGTACTTTAGGTGACAGACAAAGTGAATTCTTCTTTTCAGGAGAAACACACAACATTGAGTCAAATTTCAATATTTCACGCCCTCCTCTCTCTGCCAGACAAGAAGAAAAACCCAGAGCGTGGTGTTTTATACCCACAGTCTGGGTGCAATTGATTTACTTTCATTGGAATCATTCATCTATCAGGGCTGAAAACATAAATGTCAAAGCAGCCATAATATATTTGCACCAATAAAGTCATCAGTTATGCTTTCACACAACATAGAGAGAGGACTTTATTAACCTTCATGAggattaaatacaaaaataacattAACGAAaatctttttgtggttttctggaCAACTGGTATGTGGTGGGAGGGGAAGAAATGAATGAAGCAAGGAAGTAATATGGGG--------GGGTCCCCAGTGTAGACAAGAAAGAAGTGGGGTTTTGAAGGTAAAATGGCTCCTATGAGACCTTAAATCTTGTCTGTCCTCATACAGGACACTGTCCTCTTATGCCAATCTGTCATCGTTTCCTCTCCATTATGCAACTCACAGACACATGCAACTGATTAGCAAACTA-GAACCTACTTTTCCACAAGCTATTATCTAAGTAATATTATTTCCCTGCACAATGACAAAACATTAACCAGGCTCACTAAATCCAGTGAAGCATGCAGCCGGTTAGAAACGTCCTCCAAAATAAACAGTGGCATGGGTAATGTGGCCTTTGGTGGCCTTCAC-ATTACTGAAGTAGGTGGGTATGGGGCaggatttatttctttctttaatgggTCTGTTTTTCTCCTCATGTCTCTACTAGTGTACTTTCTTTCCTCCATTATCCGTGGCTAATTTAGGAAACGGACTTTGGGTACATTTATTCAGACAAATACGCACTTTCCTTAAAAAACACAA---------TGAGCTCTTCACAGGGGACCACGCCTGAAGTTAAA--TAACAAGTTTCTACTTGAAATTTCTGACATCCTA--TACAGAAATGAGGACTCGGGAGGATTTGTTCTTTGGAT-AGAAGATAGAAGAATCAAGTAT-TAGATTCAATCACATTGTGGGACATTTAGAGGCTGTTTAAAGTCTTACAATATAATAAATTTTGACTGCATCACATATACTTTGAAACTATGGTGGCTTTGCCTTTGAATAAATAGGTGGCCGATGCTGTTTCTCCATAGACAAA------GTGGGGAAGAGGCTTTGGAAAAGTATT------------GCAAGCCCTACTGTGTTGGCTGTTGCTCAACTATTGATCCCAATTCACATACCAGGAAGCAGCTAGCCAT-CGGGTA---CCCTATCCCACAGTGCCAGGTGGGCACCTACACAGCCTGGAGGAAGCCACACCAACCCTCCTGGGTCATTTCTGTCATCAGATACCCAA---AATACAGACTACACCTCCAGG----------------AGGGTGGCTTTCTCTATTGTTAAGAGATTCACCA-CCCTGATGAGTCAGTTGGTGAG----AAAATTGCATTTCAAGACAAAGAAAAGTCTTTCTTGCTATCCAGAATTTTACAATTAGACTGATTTagggaaaatattatatgattatCCACAGATGCTCATGGTCTCCTTATAGATTTACATAGAAGATTATAACTACCAAAATCAATCTCTAGAACCAGAATTCCTTTGTTTCATAAAATTTGGAAGTATTTGCTATAATCTGTTTGTGTCCA-CAGAGAATCaatgtattattatttaatatacaAGAAC-AAATACTTCAAC-------CAGGCACTTTGTTATCCAAATTACATAAAATACTCA--CTGAATGAAGGTAATGTTGATTCTAATACTGTAGCTCACCAAGTCTACCTTGACTCCACCTATGT

a score=44370
s chr3           153610286 2307 + 160039680 GTGAGGAACAAGGAAATAGCTGAGAGAGAAGACAGGATGA---TTACCCCACCATGGAGC-----------GCGAAGCTGGATATGCCTGCCTGTGCTGTGTGAACACACGTC-GTACGCCAGGAGCCAAACTGCAAATACCAAACGCTGTGAGCCGCTGAATCCACTCGAGTGATTCCcgaggcagaaatcagcatctccattttgcaggggaggaagcgactctcagaaggatggaagcgcagagcttgtctctatgc-----cttactcagccgtgcgactttaggcaa-cacactgcattgaaacccaaggcacagtttccccagccaaaaactggagctaacaatattaccta--catcctaagatttctaaatggattaaGCACCAAGGGCACATGAGTGCTGTAGTCCCTGAGATAGTACATGCCACATATAACAGAAGTTAAA-------------ATAATTAAAATAACAT---CCGTGAAAAGACTGCAGCAACAACAGATACCACACTGTTGTTTTTTTTAAACGACAAAC-CGAGGTTCAGGCATAGCCCTGTCTGGTTCTGAAGACCTTAGCCTTAGTTCAGACATTTGTGATGTACTCGGTAGGTAATCAGAATGGAGATGTAGCAGGGGGATGGGTTCAG----GGAAGAGAATAAAGAAGGGAAGAATGGATGGATGGGTAGGAGGAGGATGCAGAGAAATTAAAGCTTAAATATTTGATTAATACTGCTATATGTGGCGGTAAACACATAAACACTCCATCACATTTGATCTTTCTTGCAGAAACTGGTGAGTAGCCTCCCTTCATGTATGGGTGGTAAGGCGTGTGTTCC-TGAATTCTTCAGATCAG-TGCTTTATTGAAGATActgttttctgtaccactgtatctccagccacaagcacaaactctgatgcacagaaggtactcaaaataaagagctattgGCCAAGTTTTGGCAGGGGGTTCTCAT-GTACCCTGAGCACAGCTACTCAAGTGTACAAGCATGCACCATGTACCAGGGATGCTCTCCTTACGAGGTGGGCACAGGGCTGCTA-------TGCTGCGTTCTCTATATGCACATGCAG----AGCCACACCCAGCTCCA-ACCTTGAAGCCAATGGTAAA---TATATTCTCAAAGCGAGGGCTCCTGATAACC-AGGGTCATGGGATCAT---------AGAAAGGAAATACTATTTGCGCTAATGCTGAAAAGCCCAGAAGTTCC-CCAACATGGGATCAATGATATTGATGTTCCCTAGACAACAATTCAGACCACTACATCGTGCCAAACAGATGAGCTATTTGACTCATAGTACCTTTTCAACCTCCTTTCTGGACTGCAACTAGAGGAAAAATCTACTTCTGAAAGTAAAAGGGATTTAAGATCCCAATTTAATTTCCTCTCTTCCTGGAGACGcacacgcacacacaaacattcacacacacatacacacacacacacacacacacacacatacacacacacaaacattcacacacacacacacacatacacacacacatatacacacacatacacacacacatacacatacacacaaacattcacacacacactcacacatacacacacacacacacacacatacacacacacacgcattcacacacacatacatacacacacatacatacacacacacatacacacacacacacacacacacaaacattcacacacacacacacacacacacacacacacacaTAAAACAAAGTAACGGGTTTTCTTTGAAATTTCTGCCAATAAGGGAGTATTATTAAAAGAGGTAGAGAGGT-TTTAAATTTTTCCCACAAGGTATTGAAAG-TGCTAGTCAGATTTCAAAGCGTCTATCCTAGAAGACCTTTGAATTGATGGATTTAACCGTGCATGAAATTAAAATGAGGTGTTATCTTAAAAAGCTAAATTTATTTTAGTACAATTCAAGGATTTTAATATATGCCCAAGGCTGACTGTTCATCACACGTGGCATTTTAAAAATAACAAAGGATGATGCTAATA-TTTCTGGCCTAACAAGATTTCTAATTTATGGAGCAGGGACACCCTAAAGTGCCACTAACTTGTCCTCCCAC-ACTATAATTGATGACAAAGCGCTAATTTTTATACATCCAAGAAATTAAGCCTCACTTTCTGGTGCATTATTGGCCTATCCTGGATACAAAATGGCGATGAAGAAACAAATCACCCTGCAGCTGATTTGTGGCTCTTCCGAACACATAGGATTCTGTGCAGGGG-TGCTTGAAGACAGCTAACAGTCAAGAAAGTTCTGGTTTTAGGAGATACTGTTCCCACTTTATGTGGGGGAAAAGCAAAGAAGGGAGAAAC
s HiC_scaffold_1 140426563 2001 + 233722169 GTGAGGGGCTAGGAAAcagctgaaagagaaaaaaagaagcagcttATCCCAATTTAAAGCTTTCAGATGAAGCAAAGCAGAATCTGCT---CTATACTGTGCGTGCATGTGTCTATGTGGCAGGAACCAAGTTGCAAATGCAAACTATTTCGTTTCATTGAATTGTCCCAACCAAATCCCATGGCAGAGTTTAGTACTGCCACCGAACAAAGGA-------AATCCCAGAATGTTCAAAGCACACAGGAAGTCTCAGGTCGTCTACTTCCttcactgtgtgaccttgggcaaatattttacataaaatctcAAGGCA---GTTTCTTAGATGAAAACGAGGAC-AGTAATATTACCAAATCATCTGACTGCTGTTAGATG--TTAAATGCAAAGCACACACAAATCACATGCTGCCTCATACACTAAGTG--ACTAATGGAGGAGGCAAAACTACTGGTTATctatgataaaaataacaaaaaccataATAA--TTGTAATAACAACAAATGCAGC------GTTATTTTGTAGTGACAGGTGTAAGATTTAAGCATAGGTATGTCTGATTCCAAAAGCTTTGCTCTTAACTCATACATCTGCTATACATTACTTAGATAATAAGAATCAAGATATAGGAATGG-ACAGATCTAGCAGAGGAAGAAAAcagtgaaggaaaaagagaagaaaatagggAGCAAAACAGGCAGGCAGGAAAAAG-GCATATACCCGAAACATACTGATATATGTGAATATGAATAAATtaatgc--------atataattttc--tgcCGAATAGTGGAAACAGCTTTTCTTCAC-------TAAAAATTCACGTGTTGTGTTGCTTTTTCAGGTCAAATGTTTTAGTGAAGATATTGTTTTCCTCCCCACTATCTCTCCAACCTCAAGCACAGAATCAAACATGCAGAAGGTATTCAATATAAAGATTTATTGACTGCATTTTAGCCAAAGATTTTGATTAGAATAAAAGTACAGCTACTTCAGCCTGCA------------GTACCTCTGA-------ctcaggcaggaggctgaggccttCTGGAAAGACTGAAACTTGCTGGGTGAGGTCAAGCAATCACAATCATATTCAGCCCCACACTTAGGAGTTGATTTGAAAATTCATATTTGCCAAGTGAAGTCTGCAGGGAGCTGAAAAGCACTCAGTCACCCTACACGGAGGAGAAAAGTGTTACCTAGGTTAAGACTGAAAAACGGAGATATTCTACTGATGCAGGAATAAAGATACTGCTGAAAACTGAACAGTAACTTAGACCATCTCATCAG--CTTACAGATAAAATATTCAATTCACAAAGCTTCCTCAATCTCCTT-CTGGCctatgattaaaagaaaaattgacttCTAAAAACAAAAGCGATTTAGGATCACAATTCAATTTCCT--CTTCTTgagaa-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------aaatacacaagaacacaaaacaaaatatc---------ttaaaattttcatcAATAAAGGAGTGCTGTTAAA-GAAGTAGAAAGATGCTTACACTCTTTCTATAGAGAGTTAAAGGGTACTATTATGATTTCAAAACAT--ATCTTAAAAGACCTTTGAATTGATGGATTTAATCatgtatgaaattaaaatgagGTGTTATCTTAAAAGGCTACATTTATTTTAGCACAATTCAAGAGTTTTAATATGTGCCCATGGCTGATTGTTTATCAgatttggcatttttaaaataacaaaggatgatgctaatattttttttcctaacaagATTCGTAATTTATGTAACAGGAACAACTTAATGTGCCAGTgatttctcctcctgcaactgttATTGATGACAAAGCACTAATTTTTACACATTGAAGAAATTAAACTTAGCTTTCCTACATATTGTTAACCTTTACTGTACCCAAAGTGGCTCAGAAGAAACAAATAGCATTGCAGA-AAGTTGTGAATTTCCTCCCTACACTGGATTTCACTCAAAGGCTGTCTGAAAGCTGCTAACAAT-GAGAGAGTTC-GTCTTTACAAGATGCTGCTCCTGCTTGGtgtgggag-aaagaaaagaagaaagaaac

a score=15752
s chr3           153613795 689 + 160039680 AGGCAGGCGCATGTGAGCTCATCGGCCCACCACACCTTTTGAGGATGC-----ATAGGGCAGAAGCTTGGTCCAGAAAACACCATCTTTCATTTTATTTTAACAAAACGTGTTTGTCTAGAAGCCTTTCACTATAATTAACATAGGGGAGCAGTTTTCCAAAATGAGGCTGAGATTTCTGGATATAACAATTAGGAAACCATTTAAGGGGCAAGCTCCAAAATATAATCATTGTTAAGTGAAGTGTGGTTTTTCTAAGGGTAGCAG-GAGACTCTTTCACGATGATCCCTGAGTCCAGATGGAGAGAGAGGGTCTCGCTGAGCTGTAAATGCTGCACTGA-CCCGGCTGGGTAGCTTTAAGAGTGACGGTCCAGTCAGGGAAGGTtgagatgaactgttcatctgtccccaccccatccaaactccctgttgaaacaataattcccagtgactatatttggagcctgggctttgaa-agatctaagttaagactaaatgagttcattactgtggggcccaacccacaaagaccaggggcttt---ataggaggagacatgagggaaggccttcttcaacacaaagacgccatcggggacacacagattaggtgaaaagaaagaagagagaggacagatttggccacacctttt---ctgtaacttctagtctccag--ccatgtgagagaaa--------aatgtatacactt
s HiC_scaffold_1 140434157 650 + 233722169 AAGCATGGGCTTGGGGGC--ACTGTCCTGCTGAGCCCTTCGAGAACGCTTCTCATGGGACAAACGC--GGTCCAGAAAACACCA------ATTTAATTTCAACAAAATGAGATTGTCTGGAAGCGTTTCACTATATTTAACATAGGGGAGCAGTTTCCAAAAATGAGGCTCAGGTTTCTGGATATAATAATTAGGAAGCTGTCTGAAGAGCAAGATCC-AAGTGTAATTATTGCTAAATGAAGT---GTTTTCCTGGGGGTGGAAATAAGTCTCTATCATG--GCTTCCTGGGTTTCAATAGACAGGAAAGGCCTACCAGAAAtgttactgttgttttaattCCTACTGGAAATGTTTGAATGAGCAGGTCCAGCACAGGAGGGTTGCTGTGTACTG---AATTGTGTCTCCCTCCCCCAAAC---------------------------------------GCATGAACTTTGAAGAGGT---AGTTAGAATTAAGTAAGGTCCTAACC-TGGGTCTCCAACCAATTGGACTGGTGGCCTTAGAATAGGAAAAGTCACTAGGGATGCATATGTGCAGAGAAAATACCTCat-gaggacacagagagaagTAGTCACTGATGAGCCACAGAGGCCAATCTGAACCCACAACTTGAGCTTTAACTTATCTACTCCAGaaccataagaaataaatttctcttaatGAATCCACTT

a score=10010
s chr3           153615477 609 + 160039680 aAGCAGTCGCTTCCTCT-----AGTCCACTG-----GTAGTGTTTTGTTACGACATGTGTGCCAGGTCCTCAGATGAAT--ACATACACAGGCTCAGACTATGCTAGTACTGGTGTCCTAGCAAACATGACACATTCAGTTCAAGGCAGGGAAGGTCAGAGGCCTCTGAGGG---AGGGAAGACATTAGAAAATGCCCTTCAGA-GGGAGTGTGCTACTGTTTTGGTTTGGTAGTGACAGAAAAAGCATTT---------------------AAACTAAAAAAATGAAGGTTCTCACAGATCTAACACAAGCCACAGTGAGGCAAAGGCAGCTATCAGGCCATTGATATCACCGACTTCCAGAAAACCCAGTC-CTGTTGCAACTGTTGTTTCTGCTCTGACCCACACAGG--GGAAACTGGAGGCCGGCTG--------CTCAGCTATTCCTGGGATGTAGTTATCCCTGACACAGAGCTGCTTGTATTTAACTTGAGGGACATCGACTCTGACTCAAAGTCA-AAACCAAAACAAGGACCAGACTAACTCTAGGGAAAGAAGAATACTGGTGGATCAGAAAAGGAGAAGCAGGAGCCACGCGGGCTGAAAACAGACCGTAGTTCTGACCTCACGCCTCCTA-AAAGTCAAGCACCAC
s HiC_scaffold_1 140434776 631 + 233722169 aagaaataaatttctcttaatGAATCCACTTAGTCTGTGGTATTCTATTATGGTAGCCCCACCAGCTTACCATAAGAATGAACACATAAAATCTCGAGCTATGTTAACGCAGATATTCAGGCAAATA-GACAAATTCAGTTCAGCATGGAAAAGATCCAAG---TCTCAGGTTTCAGAATAGAGGGCAGGAAACCTTGACTAGATGGAAACATATTATCACATCCATGTGATAGTTAAAAAAAGAGTGCCCCCAGTacacaggagggaaaaaaaacctgaaaaattaaGGTTTGTGCAGATCTCAGATA--TTTCAGGGAGGCAAAAAAGGCTGTCAAGTCAT-GCTATCCTTGACTTCTAGAAAACGAAGTCTCAGTCGCAGGCCCTGGGCCCTCACTGACCAA-ACAGGCAGGAAAATGGAACCAGGCAGGCAGAGCCCTCACCCCCCACCCTGGAAGAGTTA---CTGTCTTAG-----TTTGAATATAACTTGAGGGGCAGCAATTCTGACTCAAAGCCAGAAACCAAAATAAAGCCCAAA-TAGTTCCCTTGGGAGGGGGAGACTGATTCAGCAGCAAGGGTGAGCCA-----------GACTGAACTTAAGCAGCAGCTCTGACTGCAAATCCTCTACAAAGTCGGGAACAAC

a score=44771
s chr3           153619677 3334 + 160039680 GGTCAGGTCTTAAATTCAGACATAATGCTTACTACCAGACTC------------CTTCTGGC----GTTCCTCCTGCCCTCTGTAGCCTAGAGAACTAA--GACACCGGTCTCGGCTCTCTAAGGCCCATAGCAGAAGAAGCACAGCTATTCGTGTC---AATGGTGGCACAGCATTGCTCTCTGTGCTGCTTCCCAATAC--------------CACTGAGGTATCATGGAACTTCATCACAGAAGGCCTTGAAGTGTCAGTTTATAATCTCATTTTTCAGTTTCCCGCAATACAAGCGCCGAGGTTCCAAAGACTGTGTCTTGCATTTTCTCATAGC------------TAGCACCGAGCCTTAACATGAAAG-AGCGCAAGACATACTGTTAGAGTAAATGAGGGAT-TTCTAAAGAGAGGAG-TAATGCAAGACCCGCTCTGGGAGGCTATAACGGCACCGGGCATGGCGAGAAACACGGAGGCAATTTCATTCAATTCCAAGATGGAAAATAATCCTGACATTCACTGTTGGGGGAATCCACGCTCTAATCTCCGTTAACGTCCCTCGTGCTTAATCTGTCAGTCAGCACATACAGATTTAGTACTAACTG-CAGGTATTCATTCTCAATTCTTGGAAGCATAAAGTCGGCAGCTTCGGGTAATACAGCTGTGGAAATGCTCTGGGTTTCTTGGGGGCGGGGGGTGGGGGGATGTAGGCACTTCCGTTATTTCTCAATGCTACTGTAGACCACTGTAGACCTCCTCTTTCTCATCTGCAGCCTAAAAGCAGCAGCAAGGGGCCCATTCGTAAAAGCACTTT---CCCTCCCAGGCTGCCTGCTG-------------------------GGTGTCT-----------------GGAGGG----CGCGACACCAGGCTCTCTCCCTTTCCACATCTCCTCTGTCATAGCCACTGCCCTTTCGGCCCAAAGGTCAGTCTTCTGTAGGTCAC-TTGAATCAGAGGTTTACCGGTGCTCTGGAGAACCATGGGCAGGATGGGATACTGATGGGGAGCTGTGGT---------------GGCCTGCATGCAT------CAAGACAGGAAAGG----------------------------------------AGAGGCTG--TGGACCCCTGAGTAGAT---------GCAGCGTTG--------------TCTACCGT---------GTTAGTAGGCAGAGCATCAGGAAGA-----------------------------------------------------------------------------CTTGGCGCTCTTCAC----------------------------------------TGGGGTGGAGTAATGCTGAC------GCACTGAGGTAGTAAG--------------------------------------------------CTGAAAACACAGAGCTCT------------------------------GGGAGAGCCA----------------------------AGCTGGCCAACCCAGCACACAGCACTCTGACGCATGCGCACCCCAGCCCG---CATGTGTCCTAGGG--------------------ACAGTGTCTCCTCTGCCCTTGAGGACCC--CACAGACCAGGGAGCAAATGATGA-ATCATGTGTAGCAAGAGATG-------------GGATGTTATCCAATGGTTCACAAGCCCTGCGGG---------GTCCTCAGCAGATCAACGTGCATCAGTTCATCCGCCTCA-CTGAGGAACCCTGTGAGGTAAGGCACCG----CCTGCCATAGCACAAGGCGATCTGGAC-AAAGATGAGGCGTCA----AGGCCGCTGTCTCCCACGGCATCACCTCTCACTCG---TCCTGAGGAGCCCAC----AGCTGGGGCTACCAAATGG-TATGAAAAG---------------------ATGAGAAG---GTTTTCCAAGGTCAATACTGATCTCCCTACACCCTTTGGGAAAAGCCCACAGACGGCTGCCTGGT-TTAGCGTTACA---------TCTGCAGCAGGAAATGCTGGCAATAGTGGCCTCCAAAAAACACCATGCTCCGATACCCAAACTGACAGCTTGTCCCTGGG--------CCATCCCTCCTTATCGCCGTGGTTGAACAGACAGGATTC--CCACCACGGC----------------ATTTCTCCCAGCTTCTCACTGCAGACTGG--------ATTTGAGAGCAGACATTAAGGATGCAGCTCTCATTTCCAATTCCTCTACTTCAGAAGTGCTGATAATTACAAGAGGAGAGAGAATCAAGCATTTATC-TTGAAAGTACATGCACAAAGCCATAGTGGGGGAAAAAAAAACATTTCTAAGAATCCCTACACTCTAAGGACGTATATGCTAGTATAGAGGCATTTTCCCACAACTGTAGCAATCATAACCCAGAGGCAAGAATGGCCTAGGATACAGAGAAGGACCCTTCCTTAAAAAGTAAGAtgtcgccttgctgacggttggtttggctgatctggaagctggacaaatgttctcttcctccctctacattctgtacacgtccctcttgaagctggacactcagaagaggactaattgcc--ccaaacacagcagggccagcatccagtcaaggg---cacacaaatggctgctctctcctgttagaacctccgaacggttctcaaagAGGGGCGGGCACAAAGTCTATCTGAATTACACTAAGTACTGATCATGTTGACCCATTCGTTTTGTTGAAATGTTGGGT-AGTCCATGCAGCTCCCAAGAGCTTT------------------GTTCATCCATGCAGCTCCCAAGAGCTTTGTTCTAGTTCTCTCGCTCAGGGCAGGCTGTTTGCGCGTTGGCATCACCTTGGGGGCAGGGGTTCTCACCACTCAGAGATTCTG-TTTAAGGCAAC--------------------CTGAATGTGATCTCTATTGACCTTCTTGCCAGCTCCACTG------------CCAGCATCTCAAGCTCCCTCTAACATGTTCTAGGCGCTCCCCAGCCAAGGCTGGAAGCATCCTTATTCTTAAGCAT--GTACCGAGACTCAACCCAGCACTCACATGCAACTGGATTTCATTAAGTGCCCTCTGATAAACAGTAAAACAATTTCATTTTAAATATTCTAAACTCCCATTCTGCAACTTCCCACAAATTAATCAGAATCAATAAAGCTTAATTGAATGC--AACTTAGCATCCTCAGA-CCCCATAAAGCTGCAGACTGATGACTTCAGGAAGGACTCGCTTCCTTGACAGGAAATTTCTTCACAATTAAGATGAAGTGCAGAACACTCAGACATCCATATTTAACACTAAGGGCCCAAAGGCCACATCAGTGTACAT--AATAAATCAGCATACTGGAAACACAGAGCTCAGAGGCCAC------------ATCTG---------------GATGACAGACAAGTTTCTCAGTGGAAAAAAAAAAATGAACCCATCTTAACATCCAAGACCTAACGATTTTTTTGGCATAGAACAGTATCAATTTAGAATGGGGAGTTGATTCCATACCCACAAGCCCTTACTCAACGCTGTCTCTC-CCTTTCCCCAGGATTCAG-TGAGCTCCGTAACACGTCTGACTAGGGGGTGTCATTTCCAGTCAGGAACAGAAGAGTCTAGAAAGGA----CAGG-------AGGGAAAACGTCACTCTCACTTGACCCAC-GGCTAGAGCGAGC------------CTTTGTTCA----TGTATCCTCTTGGGACCTTATAGAGACCTTTCACAACGAAGTTCATGAAAAATGTTAGGTGGGCAACATCCAGTCCTCCATATTTAATACC---AAAGACCCAAAGGCCATTGAATATATGAGTCATCTATATGTAGGCATATGcacacaca
s HiC_scaffold_1 140438845 3739 + 233722169 GGTCAGGATTCAGATCCAAAAATAACTCTC-CTGCCACACTCTTTGCACCACCACCTCTGCCACCAGACCCCACCACCCTGCACAACCTACAGAATTAAACGCTACCAGCTTCAGCTGTCTT-GGCCAACAACAGAAGAGGCCCAGTTGCACTGATCCTGAAAGGTAGCCC-----TATTTTCTGTGCTG-TTCCCTGTACTTCAAAGGTCCTTTCACTGAGGCATGAGAAAACTTCATCACATGGGGCCTCAAAGGATTATTCTGTGGTCTCCTTTTCCTGCTTCTTGAAATACACACTTCAAGGTTGCAAAGACCATGTTTCACACTTTGTTACAGCCTTCTCAGGAGCTAGCACCAAGCCTCA-CATGAAAGGAGCTCAAGAACTACTATTTGAATAAATGAAGGATGTTCTAAAGAGAGGAAATAATGTAAGAACCAATTTGGAAGGATATAATGATGCTGGCTATGGTGAGGAACATAAAAGCAATTTCATTCAATTCTGAGATGGAAAATAAGACTGACATTCACTGCTGGGGGAATCCATGGTCTAATCTCCTTTAACGTCCCTAGCGCTTAATCTGTCACTCACCACACACAGATTTAGTGGTTACTGCCAGGTATTCGTTCTCAATTCTTTGAAGCATAAGCTCAGCAGCATTGGATAATATAGCTGTGGAAATGCTTT----------------GGGAGGAAAAAAATATACGCACTTCCATTATTTCTCAATGCCATTGTAGATTTC------CCTCCTCCTTC------ATAACATAAAAGCAGCAGCAAGGGGCCCATTCATAAATGCACGCTAACTTCTCCGAGGTTGCCGACTGGACCAAACAAGGTGGTCTTTTAAAAGGGGTCTCACAAGGTGGTCTTTTAAAAGGGGTCTCATTTCACTAAGGCCTTTCTTTGTCCTCATCTCATCTACAATGGCTATTGCTC-CTCTGCCCTGAGATCCATCTTCTGGGGAGCACAGTGAACCGGGCACTGACCTGTATTT--GGGGACCCTGAGCAGGCAGTGAGGCAGATGGGAAGGTGTCATCTGttccatttctgggacaaaaatgCCTGACAAACAGAACTggaaggggaaaggtttattttggttcacagtttcggAGTTTTCAGTCAAAGGTTGGCTGGCTCCCAGAAAAAACCATGAGAGAACAGTGTGGCAGGGAACAGCTGCTCAACCCCTGGAagccagaaaacagaaagagca--aggaagaGGCGAAGAAGATGGGGAAGCATAGCCTCACAGGCACACTCCCAGCCAGACACACCCCAAAGAGGGCTGACTGATCTCCTAGGCGTCTTTCAAGCCAATCACATTGGCAGTCAACCTTCACCATTACAGGAAGTGCAGTGGCAAAATGGCGGCCTTGGGTTCCTGTAGGATCAAGGGGTCTTTTCTTCCACAGCAGCCATTTTCTACCATGTCAACATGAACATTCAGAAGACACTGAGCTCTCTATCCAGGTAAAGGGACATTGAGATGCTGATGAAAgacaattaattaaaataatttcatacacATGTAGGGGGCTGACTCAGCACATGAC-----GATGAGTGCTGATCCTTGGCCAAGCCTTGTGCCAAGGGGCTGGGAATGGAAAGACGAGAACAAGGTCTTGTCTGCCTTCATGGCCTCATCACTGTGTAGGAAACAAAGGATGATGGGAAGATTAGCATGAGAGGAAGAGGGAATTACAGATGTTAACCCTTACTGAGCATTCACTGTGTGTCCCACACTGTCATCGGCACATTTACCTGTGTCAGTTCATTTAGGACAGCAGAAAGACCCCATGGGGGAATGTGCTATGATTATATAATAATCTGAGGCTACTGGGACTCAGGAAAAAGTGCTATGGGAAGCCAAACAAATCCTCTGTAACACCTTTCACTCGATTTTCTTAAGAGTCTACCAATAGCTGTTGTTCCCAAACAACTAAGAGAAGACTATGGGAATAAAACTGACAATGAGAAACACATCCTCCAAGATTCCTACAAAT-TCCCCCCACCCCAAAGAAAAAGCCT-CAGA---TTGCCTGATGCCAGCATTGTGATACACAATCCTCCTACAGGGAATATC--CAGGAGTGCATTTTTGGAAACACTGCCCCTGTATATCCGGACCAGCAACTC-TCCCTATGTGCACCCTCCATACCATCTTGCCTCCAGCATTGAACAGAAAGGACTCTACCACCCCAGCTCCCCCAGGGTACCTGGTTCCACCTAATTCCTCTCCACAAACAAATGAGGCTTGCTTATAAGCCAA-ATCAAGTGTCTCATGCTGTATTCCAACTTATCCACTT-ACAATTCAAAGTAATTCTGACAAATAAGAGAATCACATTTTCATTAATGAAAATACATAC-----------------TGAATAAAAGTATTTCCAAGAATTTCTGTACTTCAAAAA----------------------------CACAACTT--GCATT-------------------TGAATTAACATACCAAGCATAAATCTT-----------------------------------GTCTGATTTATC-------------AATGTTTgttactt---tatatattctaatca-gtctttgttgtttttatttgc--------------attggcATTTAAGCATAGACTTTCCTGTAT----TTAAAAGTTTCACATAAATCACTTTTCTCCCCTCCTTGA----CTGTATTGATCT---GGAGAG-------TAAGGTCTCTCCCATTGATCCTAAACCCTCCATATACTTAAGAATTA--TCACTTACAAAATCGACCAAATCCAGCCCAATCCCCAGAGTGTTTTATTTACACTGATTTTAGATAATTCATAATGCTGTCCAGGACTCTGAACAAGTTCTATTGCACAAGGCA--------GCACACTGCAAACA-CTGGTGGATAGTGG---TCACCCAGAAGAGTTTCTGATTTAACTGAACCAAATGCTATCTTCTCGGAACTGAGTGTGGCCATCACTGACCAGAGTGCCACCTCCATTGGTCTGGCTGTTACTTGCATCTCAAGATTTTTCTGACTCTATTGTGAC--------ATCATGACTGAGAATGTCCTATGCCTTTGGGATAAGTCCTAGGATCTAGTACAGCATGTATGTAGAATTGGCTTTCA-TAAGTTTTGTATAATATATGAGAAATTG--TTCATGTAAAATATTCTAAACTCCACTTCTACAGCTCCCCACAGATGAGTCAGAACCAATAAAGTTTAATTGCACGCTAGAGTTACTACACTCAGATTCCCATAATGCTGTAGGCTGATGACTTCAGGAAGTCTTTCCTTCCTTGCCAGGcaatttctttattattaagaTGAACTGAAGAAGATTCAGGTCTCCATATTTAGCATCAAGGGC-------TCACATCAATATACACCAAATAAATCAGTACAGTGAAAATACAATGTTCTAGCGCCACCAGAGATGgctggtctgtgtgtgtgtttttaagacTATACTTAGACTTTTTACTG-------AAAAGCAAATTGATCTCAACATCTGAGACTTAACAGTTTCATCAGCACAGAACAGGCTT--CTCTGATTGTACA---CACTTCATGCTT-CAGCCCTCTCATCCATGCTGAGTATCACCTTCACTTCGGGTTCAGACAGGCACACTCACAGTTCCCATCAGAGGG-----CTTGCTGGAAGTGACAGGAG-GTCTAGGTGGGGGACCTAGGCTGAGATGAGGCACTCTTCACTCTCACTTCACTCTCAGGCTAATAAAAGCCAAGGCTGAGGGCTCTGCCCACCTTTGTGTCCTCTCAGAGCTTCACAGAGGGCTTATATA--------CAAAAAAACTTT-------GCAATA--------TTTGTGTTCAATACCTTTAAAGCCCTGAAGTGGATCACACACATAGGcacactgtgtgtgtatgtgtgtggacACA

a score=32413
s chr3           153627398 885 + 160039680 ACTGAGTAGGGTTTGTCAGGGAAGCAGAA-TGGTCTGAACCTCAGGAGATAACCCACCTTGAATTAAATGTAGATTTCATTTTGTCCAATCGTGGGTTTTTTTTTTCTATTTGAATACACAAATAAGCTCTCATTTAATATAATGAAGAACTTTAACACTCCCAGTTGGGATGGCTGTAAAT-TTCAACTTGCCTTCTCCTTCAGTACAGATGGGACACATAAATTAG----AAATCCAAGGTTGCCAGGCCAGAAAATGTAAGGCTTCTAAGGGTTTTAA-TTCAAGTATGTGCTGCTGAATGCTTTCTCTATTGTGTGGAAAAGTTATGAAGCGTCT-GTTTTAATTAATAGAGCATAGGAACCATTGCTGAAATTTT-AAGCATGGAATTTCAGCACGCAGCACAGAGTTTCCTTCTAGTCGAATTAGCATATGGCCACAGGACTCAATTCTGAAATGGTCGTGATAAATCGCAGGCATTTAGAATGCAGTGGCTCTTTGCTCCATGTAAATAATACATTAGAACATTCAAAGGGCAGGTATGTGGAG---------CTCAATAAAAATGTACGATATGTGCAGCGATGC---TATCCAAGGCTTGGCCATACAACATTATCCCACTT-GGAAATGGCTTCACAATCTGTACAGT--------------------ACCAGAGTGGCTTTC--CTAGTGTTCCAAGGCAGTTCTACCACCCACCAACTC-AAAGGAATTGTCCCCAAG--CCCAGCAAGTATTCTTGGCTCCAGGGATACAGTCACATTATAAAGTC-CCTACATAATTCAGTGGTCTGGGCCAGTGTGTCAGTTCTAGGATGGGAGAGCACCCATCTTTCAACTCTAGATGTTATCACTCAGAGCCTCTGCTTCAGTTACATCAAGGATAGATGGGCAAATCTCCAAAAC
s HiC_scaffold_1 140446527 912 + 233722169 ATTGACCAGGGT--ATCAAAAAAGAGGAAACTGCATTAAGTTTGAAAGATAGCTCACCACAAATGCAATGCAAATGTTATTTTGCCCAGTCACA-------TTTTTCCATCTGAATACACAAGCAAGCTCTCATTTAACC-----AAGAATTTTAACTCTCCCAGTTGGAATGGCTGTAAATCTTAAACTTCCCAATTTCTTTGAGACAGATGGGACacataaattaggaaaaaaattaagattgcCGGACCAGAAAATGTAAGGCTTCTAGGGgttttaaattcaaatatgagCAACTAAGTGCATTC-ATATTATACAAAAAAGT-ATGAAGCATTTCACTTTAATTAATAGAGCATTGAAACTATTGCTGAAATTTTGAAGCATGAAATCCAAGCACATGGCACAGAATTTCCACTGAGTTAAATTAGCATATGGCCACAGGACCCAATTCTGAAATAGTCATGATAAATCACAGCCATTTAGAATGCACTGGATCTTAGTTTCATGTAAATAATACATTAGTACCTTCAAAGGTCAGGTATCTGGAGCACATACCActcaggaaaaaattataaaacatcgCACGATACTGATGTCTGAGACATGTTTATAGAACACCATAACCCTTCAGTGATAACAACACAATCTCCAAATTAAAATTGTTATTACCTTTTCATCAGAAGAGCCTTCTACTAA-ATAGAAACACAGATGTACTGATCATTGGTTCAAAAGGAGTTTTCCTTAAGGAACTTGCAAGTGATCTCTGCCTGGGAGATATATCTCCATTACAAAACCTCCTACATAATTCAACAACCTGGCCCA--GCATTAGTGCTGTACTGACACTGACTCTGTCTTCcatttctgaattttataattca-aatttCTCCTTAGGTTACACCAAGGATA-ATGTGAACATCTCAATAAC

a score=29254
s chr3           153633572 1094 + 160039680 ATGTGTTGAACAAAGTTGAACAGAATTAAGTAGTTTAGACAATGTCCACAAATATTTTAGTTACCCGGTGATTCAATCTGCAGAAGTGATGCTTAGATGTAGTAATGAAGTCATCTGCAAAAGACAAATTTACTGGATCCATCCAGTTAGCCAGAATGCAAATGCATGCCACAGGTAAAATATGCATACACACCATAGCCTACGCTTTCATG--------GGACACA---CTGAATCCCAAGTTGGTAATTACAAAGCCACAGGATGGAAAACAAC---------TTGGATGAAGAA-CTGTGCCTCTGCAGTATGATGCAGTCATCAGTTGTGTGTTCTAATCAAGGCAGTAATTGATTCTGAGGCCACTTAGGAT--GCATGGGTGTTTGGCAGAATACTGTCCACAATATTAAGAAGAGGAGGAGAAA-------ACTGTTTCCTGGGAGTTGCTCTCAGAACTAAAGCTTTAACAAGAGATTCAATGGCTCGTTTTATTTCTTTACAAAACTCAGGCTTggagcccacaagatgtctcagtgagtgaacctaccttcccagagactttagttcaatccctgggacccacatggtaggagagaacctactcgcaagttgccctctgatctctaatgtgagccctagcatgcaagatgcatatgcacacacGATATGCAAATACAGATTTAATTTAAAAAAAAAATCAGGCTTGAGGAAG----------AGGAAGGAAGGATGGATAATGTTGTTTCCTTGGAAACCAAATGTGCTGTTACTGCAGCAATGTTCCTCGTGAATCGTGGCCCAGAGGGTGAAAATTTTATTCATTTGCTTAAAACTGGACAAGGACAATTTAGAACCCAAATAATCGTGGTCTCC--GCAATTTCGCAAGGAACTCC--------------AGTGGGGGTGCTGCATATCTACTCATAAATCTGCAAAGGAATGCAAGGAA-GCCCCCCAGGAGGTCACAGGAAGCAGTGGACGACCATAATGAGTTATCCACACAATTTCCAGGGGAGGGATATAAATAAGTACCGCCAGGTAGCTGGCTCTCCCGCTCTCTCCTGGTCCCTTCTCATGACCCTGAGCACACAGCCTAGTCCTGGAGAAG-AGAGTTTGCAGGAAGACT
s HiC_scaffold_1 140457723  963 + 233722169 ATGCATTCAACATGGTTGA-CTGAATTCAGTGGTTTACACAATGTCC-TAAACACATTTTGTAAGCTGTAGCATAATCTACAGAAGTGATGCTtagattaaaaaattaacttaGCTGGAGTTTAGAAATTTATTGAAACTATTCAGTTAACTGGCATGCACATACATACTgagaataaaatattcatatacaCTGTAGCCTACCCTTTACTGTATTCCCAAGCCACATAACAGAATATCAAGTAAGTAATTATAGAACTATACGACAGAAAATAATCAGGGTATTTTGGTTATAGAAGCTGTGACTCTGAAGTATGATATATTCATCTATTGTGTGTCATAATGAAGGCAGTAATTTATTTCAAAGTCATTTAGACTTTGAAATGCTATTCTGCAGAAAAGCATCCAAAACATGATAAAGAAGATCAGAAAGAAAACCATAATTTCATAGGAACGAGTGCCAGAACTAAAACTTTAACAATAG------------------------------------------------CAAGAGGT-----------------------------------------------------------------------------------------------------------------------GGCAAAGGcacattc-----------------tgaattttaaaaaaaactcaggcTTGAGGAAGTAGGAGGGGTGGGAGGGAAGGATGGATA-TGCAGTTTCCTTGGAAACTAAATGTGATATTATTGCAGCAATAAGCCTCAGGGATCATTGTTTAGAGGGTGGAAATACTGCTCATCTGCTTAAAACTGGACAAGGGTAATTTAGAACCTAAATAATTGTGATCTCTAGGAGAATCCTCAGGGAACCCTAAAGACTGCTGTAGAATGAAGGTACCAT-TACAAGCTCATAAATCAGCAGAGGAACATAAGAAAGGTCCCCCATGAGGTTGCGGAAAGCAGAAAACCTCCATAATGAGTTACACGTATAGTTTCCAGGGCATGGATATAAATAGGCACCACCAGGCATCCTACACTCCCTCCCAC-CTTGGTCCTCTCTCATGGCCTTGAGAAAGCTCCACAGTCCCAGATCAGCATGTTTTTCAGGGAGACT

a score=87296
s chr3           153640567 4539 + 160039680 [encoded data, 4992 characters]
s HiC_scaffold_1 140461744 4437 + 233722169 [encoded data, 4992 characters]

a score=25408
s chr3           153645648 1156 + 160039680 TTGTTCTGTTCCATGAAGTCATGTGAGATCCTAGGACACCCACGGTGAGTGCTGATAGGTCAACACCTGTCTGTAGCCTGCTAAGAACTGGGAGCTGCAGATGAAAGATCCTGGCCAG--GTCCGCCGTGCACAGTTTACAGTATCAGTTAGGGCTCTAGCTGACTTCACAAGGGTATGGTAGACAAACACCCACAAAACCACACTTGAACGCCTTTAAAGCAGTCGAAAGAACAAGTGCCCAG-------------ATGACACAAGAGAGCATG----CCCAGGAA--------AGAACAGAGTGAAGCTTTGTC--TGCACAAGCTAAC-AGGCACAGTGGTGAGACCCACTTGACGGTGTGGCGGGCAATC-TCATCACCAGGCAGCAAG--------AGGGCGTGGAGACCCACAGGGGCATACCCAGCCCAG--ACGAGATGAAGCTCTGCGTCAGTCTTCCTTGGTTCTGAGTCATTACTTCTAGGGAGGGAAGGCATTAAAAAAACCTTTCAAGCCACAA-CCACACATCTTAGGGAGATAGCTAATTAGAATTCACCCTTAACTGTGAGAGAATTAACAGACATTAAATAATCATTATTTATAATTGGAGAATCAAGTTACCCAAAAGGGGAGTAGG----CAAGCTCAGATTGCTTTGCTTAATGTTTAATTTACGAAAATGGAAGGGTATGTGGTTCTCGAAAACAATCAATAACTTCAGTTGCTAAAGTCAGAAACCTTAAAAGTATCTTTTCTTCCTAAAACACCTACGTTAAAACTGTTCTGTTATATGCTTTGTTCTAGAAAAGGGGACAAAAAAAATTTTGATTATAAGTAG-CAACACACAGGACA--AAGCCTTTCCTGAGCTCTGGATTGAGTGACTGAGGGAgggagggggagggggagggggagggggaggggaggagggagAAGT----TTTGTCATTCTTAGGGCACAGCACTCATGAGGTCTTCTAAGTCATCTCATTTGTTTGTTTATCCTACTTT-----TGTTTTTCTTCCTAGACGCTCCACTTTCTCTCCTAAGGGAGGGAAACCTTCAAACCACCTTCCATTCTCTCCTCTCCTGACAGGGTA-CCTCCCTGGCCAGGCTCGCAGCCGATAACTTGGTCTT-------------TCTGG-------AAGCTGATGGGTCAAGCCAAGACATAGATTAAATAAGGCCTCATATTTTCTGTATTGCTC
s HiC_scaffold_1 140466327 1167 + 233722169 TTATATTATTCCAGAAAGTCATGTTTAATCCTCACATACCAATGCTGATGGGTGACCAATCAATAAAATT----AGCCTATTATGCATTAGCAGTGCTAGAcgaaaattattttttagtggTTCTCT-CAATCAGTTTCTACCATCACTTAGGATTAGAGCTGTTTCTACCAGGACCTAGAAGACAAATATCCATAAACACACATTTTAATCTCATTAAGACA----CAACGAGAAATGTCcaaccacattttttttaataaacaagtGACTGTGGTGTCCCAGAAATGTATCATAAATCAAAGTAAA-CCCTGACAGTGCAATAACTAACCAGGAGCAATCCTGAGACAGA------GGGGTGGTGGGCTCTGGTCTTTATCTAGCAGCAAGCCTACGAGAGGCCCCGGGTATTCTTTGGAGCTTTCACAGCCCTAGCACAAGATGAAATTCTGTGTCAGTCTTTCTTGGTTCTGAGTCATTAGTTCTAGAGAGGGAGGACATTAGAAAA-CCTTTCAAGCCACAAACCACACATCTTAGGGAGATAGCTAATTATAATTCACCCTAAACTGTGAAAGACTTAACAGacattaaataatcattatttataATTGAAGAATCAAgttactcaaaagaaaaaaaaaagacaaagctcAGATTGCTTTGGttaatgtttcatttaaaaaataaaaacagtatgtaGTTCCC-CAAATGACCAGTAACTTTTGTTCCCAAAGTTAGTAACTTAGAAATTATGTTT-----AGGGAGTAGCAATGGTAAAACTAT--AATTAGAATCTTCATGCT-TAAAAGAGTAC-----ACATTTTATCCACGTATAGCCCACGTACAGGATATCTGGTCTGTCCTGAGATCTGAA-AGAATGGCCGAAGGA------------------------TAATGGAGCTTACACGAaagttctcttcctccttttcaacGCAAAGCATTAATTTAGGAGACTTAAAGCTTTGATTTAT---TTTCCCCTATTTTATACATCTTTCTCATCTTATGCTCT--------TCTCCTAAGGATAGGGCACC-TCGAATTGTCttagttttgtttctctctcaacTGGCTGTCCACCCTGGCAAAGAGCATCGACAAAGTCCTACCTTTAGGATAGCTGACCTCAGGGAGTTCAAAGCAAATGAACTGAGCTGAGATACGGATGAAATAACAGGTCATGTTCTCCTTACTTCTC

a score=20663
s chr3           153648475 706 + 160039680 ctatctcaaaaacaaaaatcaaacacagtaataatgataCCAAGGGAACAAAGGACACAGGGTGCTTGGGGGTGAGCTCCCCCTGATGTCAGCTCCCCCTTCATAATAGT--CCAGAATATTCAGCTGTTGGCTGCTCTATAAGAAACAGTCTATATCCTGTTGCTTTAGAACACTTGAAATCATGTAAATTATTCCTGGGGAATGTTTAAAAATTCATGTTATTTACTCCTGAGAGGCCACAGCAA------CATCTTTCCAGACTGCACCAGACTGTTCTGCGGATGATggggggtggaggggagtgatggggcgggggcgggggggggaggggggTTAATTTCTGAGATGCAACAACCCTGCTTTGTGCTCAGATCAATAAAAGGAAATGAGCTACTGTGGTTTGCCTGCCACCCC--------CTTCCCCCACCGTATTCACAGTCCTGAGTGGATCAAAACTCCATTTGTAAATTAAACTAGCTTGTCTGGTACGGGAACACAGCAAGCCCGTGAGCACTGCAAACCAC-----------ATTCTCTGAACGGCACATCTCCC------------------TCCCAGGCCAGAGAAGAGAAAAATAAGCCAGCAATGAACAGGCCCTGTATACCCCCAAGCTTTACATACG--TCTTCAAACAATTTCTTTTTTAAATGCTTGTGTTTCCTTCTCTCTAC-------TTTATTACTTTGACCTGTGTTTT----AAAACAAAACAAA---------------GACTGATGTCCA
s HiC_scaffold_1 140467900 719 + 233722169 ctctctcaaaacaaataatGGA-----TTAAGAACAA-accaaagaaata-------cagaattctTGGAAATGCATCCCTACAAACA-CAATtctatcttcctatttttttccaaACAACTTGTGAATTTGATCTATTATAAGAAATACTGTATATCTTGTTGCATTGGGACACTTTAAATCATGTAAATTATTCTTGGAGAATGTTAAAAAATTCATGTTATTTACTCCTGAGAGGCCACAACAACGCCTCCATCTCTCCAGATTGCACCAGACTATTTTGTGAGT------------------------------------------CAAAGATTTTAATTTCTAAGATGCAGCAGCAAAACTCTATGCTCAAATCAATAAAAGGAAATGAGCTACTGCGGTTTGTCTGCTTTCAACTGTACAGCTCCCCCCATACTTATCACAGTCTACAGTGTATCAAAACTCCATTTGTAAATTAAACTAGCTTTTCTGATAGAAGAATGCAGCTAAATTATGTACAGGGCAAACCACACTCATGGCTTATTCTCAGAACCACGAATCTCTCCTTCGGtgcctctttctgtccttggCCAGCAAAT----GcataaaccaataaaatcagGATTTTACAGAGTTCAAAGCTTTATGggagattttttaaataattctttttgtaAACTTTTTTGTTCCCTCTTGCCAGCAGCACAGTTTATTACTACAAccttcattttctgaaaaataaaataaaataaaaaaggttaggGACTGATTTCCA

a score=34556
s chr3           153655140 2995 + 160039680 CTCAGCCCGAGTGTGCTGGAGAGTGTCCTTATGTTACTGGAATTCCTTCACGGCAGGAGCTGGGGTGCAGAGATGGTTCTTAAAATGCATCCCAC------------TTTGGGGACTTGTGCTAAAACAAAATCCCAGTTTGTACCAAAAGTATGACTTTAAGAGTGACGAGAGTGCCCTCTTGTGGTAAGGACTGAGAACTGCAAGCA-------------ACCCTGTG----------ACTATTAAGGATATTAAGTTGGGA---------------GTTTTCTCCTCTTC------ACATTCTTG--GTGGCCCGACAGAGGAAACCAT----CCTTGTAAGTACA-GAAAATTCCAGCGGGAAATGGACAAATCTATCCTCGGCCAGACAGGTCCAGGTTCTGTTTCCCTTCT----TATGAGCAGTCACCTTTGAC------------------AGAAGACCACAA-----------------GCTGCTG--------------CCCCAGTGACATTGATCGGGACCTCAACGACTCTTGACACCAGGTCGAAAGTCTTTACGGAACACACCAAAATGGCAAAGAGTTGCTCATTTCTG-----AGGGCCACCCCGTCTTTGGAGGACAAAGAGATtagatagatagatagatagatagatagatagatagatagacagacagacagacagatagGTGGTGGGTGGATGCATGCATACATATATTTCCTGAAAGTCAGCCTCCCACA------------CAACAGAACAGGA--------------CAACAGAACAAAGAGGACATGGAACACGACTCACCATGCCCTGTCTAGGTCACTAC-----AAGACaaatttttttttttaaatccaaatttttttttaatCCAAACAAAGCCACCAGTTTTCACATGTAAATTATTTATTCGGGTAAGTGATGAGACAGAAGCCGCATCAACAGTAAAACCAGGGTGCTCTGTGACGACAGGGTAAGACAAGAGGAGC----------CCCACCCCAAGTTTTATTAAAATGAATGTGGAGTACACCTGGCTGGA-TCCCTTCCCCGTGCAGGCTC----TTGGGATGC---------TGTGATTCTAATTCACAGAC------GCTCTCTGGCAAGC--CCATGTGTTTTCAAGCCCTAGAGAGGTAGAAA-------TGTGGAAGATGCAACTTAGTTTCAGCTATTCCTGTGACAGCCAAAGGG----CCAGCAGAGAAGACAACCCCAAAGACAGTCGAAGAAATGCAAATTAAAGGAAGGCGGTTGGCTGCGTTATGTGCCAGTGAGTTGActtgataacctgagatccacacctggaacccatgcgacagaaggaaaaaaacaattcccaagagctgccctctgaccttcacacgcacacctagaagaagcatgcctgcatatcctgtacacacGATTTTTTAAAAGGATCATTTCTCTTTTTCACAAAAGAAATGATGCACTATCGCTCTGCACTAACCAGAGAGGTAAATGAAAAAGCTTGATGTC-CTGGCATATCAATTACAGAAGACCCAAGGAAAGAGACACTAGAAACCACCTCTAAGAAAAGGCTGAAATATTCTTTCCATTCCAGGGCAGAAGTAGCATCCAGTGTCTGCAGAATGTACGT---TATCTTAAGACCCAGGCCCTCCCTTCTGAGAATTCCAAAGCACCGTTTAGACAACTTTT-CTGAGACCAACGTCCCTTTCCCAAAGGGTCATGATGGCTCACAGACT-----TTCCCCTTTGGGCTCCAGGTGCATCAGAGAAAGAAGACAGAACTGAAAATCCAGAAACCATTTAAGAATCAGACCAGGATCGGGTAGACCCTCCAGAGCTT------------CCAGCAGACATGGC--------------AAACCAGCAAATGCCATGACTAGACACAAGATGGCTGACCAGGCTTC----CAGTCTCACAGGTTAAGAACTGTTCCCAATCA-------------------------------CAGGGCTCGTCTGTTTGACCCA--TGAGCAACACCATCCTGTGTGCCTTCCTAGTGTAGACTCCACAGAAGCCTCACTGTCTACCCTGCGGG----CTACACAGAGGCTCCACACTGAGAACCGC-AAAGGACTGTGAGCCTCTCTGAATCTACAAAGGAGCTCACCT----GCTCTACAAACAACCTTGGC-TTGCATCTAAATGA------------------AGTGTCTAGAGGCTGTGCTCTCCCAA------CTTAGCCCCGGA-------CCACAGCATCCTGAATAGCATTGCCCTTAATGAGCCACGGATGAGACAATGGCTCTCAGGCTGCTCTGGCATGGACTCCAAGCTTCCTTGGAAAATCAAAATGCCAGAAGCCCAAGTAAACACTTAAGACACAACAATGCCAAATAGACATGAATAGCAAATACCTCCAAAAATATGAGCTTCTCAAGAGACATTATTTACGCACTCTGCCATTTTTTTTCTCTTTCTGTGGCTCTCAAAGAGGATTT-AATCCTCTGACAATTTTTCACTCAGAGAAAGACAAAGGAGCCCACGGTGGAAGGGAAAGCATTGCTCCATGAATCAAATCCAGTCTGCCTCATAAGTCACAGTGGATCTACATTTCTGTTCTGAGTAACGA-TTGGAAAGAGGGCTACAACCGTAGTCAGGAGGTCTGACTTGTCACCTCAGCTCAGCAACTGACCAGTGGTGAGGCACCAGCTTCCCTTCTGAGGTCTGGTCTCACTGGCCTCACGGATCACCTGTCTAG-----------GGCCCTCATAGCT----CATGGCCTCAGGAATGTGGCAGAGGGCTGAGTGTTCCACTCTAATGTCCTCAGTTTCTGTTATGTGGGT-------------------------GCCTCTGCCCATCT----CAGAGGCTCTA-GGCTGGTGAAGCCTGCACCC---ACAAGGCAGGATAACCCAGAGGCTTCCACCTGCCTGGACAGAGTGGAGTTCCAATCCTCAGCAGGGTCTGCTG-----CTGCAAGGATTGCTGGTCCGGAACACACCCTCTCTGGTCTTCTGTCCCACTCCTCTCTATACAGTTTTCTGGTACTATCGCCCACAGCAGGCTCTTGAACTAGAATC---CTTTGGAAGAAATCCAGATTGAAATAGAGACAGCATGGCTTTCTAGCAA-----------------------------------TCCACTCTGT------AACACAAGAACTAGTTCATTTCTGTCCAGAGCTGACCCCAAAGCAACCTTAGGGGGA----AAGCCTCATTTTAATACGGCTCTGAAGCTCT--GGCTGATTCCTGGTGGCTCTCAGCGATG
s HiC_scaffold_1 140478478 3036 + 233722169 CCCAACCTGGAAGGGCTGGAGAGTG-AGTTCTGTTCTGAGCGCACCTTGAAAGTGATAGCTGAGACACAAAG-TAGCAGTTA----GCATCACACAGGCAGTGTGCTTCCGGCAACATCCTTGAAGAGGCAACCCCAGTTTTTCCCAGTACTATTGCATTGAGAGTGACGAGAGTGCCCTCTTGTGGAAGACACGGGTCCCTGCATGCAGGGTGCAAACTCCAACCTGAGTAAGCGGCGCACCATTGG------TGAGTCAGGCTCCTGCACTCTTCCTGTTGTCTTCCTTCCTCGTCGACATCATTGCAGTGGTGTCCAAGGGAGAACTGCTTGCCCTCAGCAGCACATGCTCATCGCCACAGGAA-TGGACAGCCCCGCTTTCGCCTAGACCGGTCCAAGATCGGCTTTACTTCTGATCCATGGGCCTCCGCCCTGGCTTGGAACTCATCTTCATTGAAAAGGCCACCATGGCAGCAGGGTGCGTGGCTGCAGGGTTCAGGGCTGCACCCAATTGACATGCACATGGGCCAGGCCAGCTCTGGATGCCAGGCAGAGGGGCTC-ACGGAACACAGCAAAACAG-GAAGATCAGCCCATTTCTATGTCAAGGG--GACTCACCTTTGGG---CAATGAGACCA-------------------------------------------------------------------------------------TTTCCTAAAACCCAGTAGCCCAGAGCATGCATCAGCCAACGGAAAGGGAACGGTGAGGGGCCTCAAAGGCACCAGCCTGACA---GACATAACTAAATGTCCCCTGTCTAGGTCACCACTCTAGAAGAGAAAACCATTTT----------------------ACGCAGACAAAGCCA----TGCTTACATTTCAA----------GAGTCAGCAATGCAGGAAAAGCTATATCCACGGCAAAGCCAGAAG--TCTAACTTGAGAGGGTTGGAAGTGAACACCTTTGCCTGAACTCATTCCAAGTGTTA--AGACTAGACAGG-------CCTGGTTGGAATCCTCTCCTCAAAGGGGCTTGTAATCAGGATGCAGCCCTGGGTATAATCTGTGTGCACAGACAGGTGAGCACTAGAGCCAGAAACACTAGGTCCACAGGACTCACAGGAGCTGCAAAAGCAGCTGTGGGGAACCTGGCTTAGGTAAGATTAT--CTGTGGCAGCAAGAAAGAAAGCCAGGGAAAAGGACATTACCATCACCCTTCACAAACAGGCGAATTCACAGAA---------------------------------------------------------------CATGCAATAG-----------------------------------------------CACCCAGGAGAAGCATA-----------TGTACA---------------GAAATATTT-------------AAGTAAGGATGGTCTATTGTTTTCCACCAATCAGAAGggcaaaatgaaaaattagacaCAGCCAACACATCGGTTCCGGATGATCTGAGGAAAGAGACACCCAAATCTACTACAAAGGGAGCCTAAAAATGGTCTTCCCATTTCTGGAGACCAGATGTACCcaataccttaaaaaaaaatgtgcatatCTTACAACATGGTAATTCCCTTCTGGGGATTCTAAAATAAGATCTGGATAATTTTTTCCAATATGAACATCCTTTTTCCAAAACTTTGTGAATGATCATATAGTAGGAGTTAAACTTTTGGATCTGcgtaaataagaaaatgaaagaaaaattcaacagCCAAAAAGCGTCTAAGAATTAGGACAAGTGTCAGTGGATTCTTCCAATCTTATCTTCACTTTCCCAGTAGAACTGGCCTGTGGTGAATCCCAGTCCTGGAAACTTCTGCATCAAAGGCAAAATGGTTGGCCAGGTTTCTAGCCAGTCTCAGAAGATCAGAATTATACACAAGCAGCTCCTTTCCAATGTAAATGTTTACCATCTGcaggggttgtttgtttttgctggGTGGCCAAAGTCAAC------ACCCTCAGTGTGTGGAACCT--------CTCAGGCTCAGTCTTGGGGGGGTGTCACACAAACACTTCCCAGTAAGCATTACCGAAGGTTTATGCGCTTCTCACGGTCTAAGAAAGAGTCCACCTCAATGCTTCATAAACAATCCTGGCCTTTCATCTAAAGAATTCACACAAGACGGACACCATGTCCACTGGATAGAACACCTTAGAAGTTGCTTTGCTGTGAGgtttcctcctccatctcctcaaTAACCTGGACGGTAATGAGC-ATCTTTAAGGTGGGGGCTGCCAAGCTCTCCTAGAATAGATCAGCAGCGTccttggaaaaacaaaacactagaagcccaagtaaacactgaagacatGACAATGACAAAAAGACATGAATAATAAATGCCTTCCAAAATATGATCTTCCTGGGAGACTTTATTTACATACTCAGCCATTTTTCTGCTCTTCCTCCGGCTCTCAAAGAGGATCCAAACCCTGTGACAATTTTTCACTCAGACAAAGACAAAGGAATCTGTGGTGGGCAGGGAAATATTGTTCCATGAGCCAGGTACAGTATGCTTCATAAATCACCACAAATATAAATTTCTGCTGTGAGTAGCCAGGCAGAAAGAGCACGGCGGTGGGAGTCAGGAGCCCTGGA-TGCTTTCCCAGCCCTGCAGC----------CAAGACCTCAGTTGTTTTCTTGAGCTTTGGATTCTTTCTCTGTGTAGATAA--TGTCTAGATCCCCACCGAGGGCCCCGTGGGTGTAATATGGCCTCACGCATGCAGCAGAGCACTCCATGCTCCAACCATATTCTCTCAGCCTTTGTCACTTGAGGGACACTTGACAGGCCtccagctgcagccccagcctctcTCTGCCAGGGGCTCCCTGGCAGGCAGAGCCCTCACCCCATCCCAGGTGGGGTAGCTCAGAGG----CACCTGTC----------------ACACTCTT--GCAGATGCCCCCAGGTGTCCACAGGCATCATGGGCTTGAAATACATCCTCT---GTCagcttcctctcccctcccaggCCTGGCTAGGGGCACT------------GGAATCTTTGCCTCAGATTCTGCTTTGTGGGGAACTCAAACTAAGA-AGGGGTAGAATGTCTTTAAAGCAGAGTCTAAGTCCTTTCAAGTGGCCCATCTTTGCATCTTTAATCTGTCCTCACGATATGGGAAGTAG-ACAGTGTTCTTCAGGGCTGACCCTAGTGTAAACTTCAGAGGATGACGGGCCTGATTTTAAACTCTCCCCCAGTCTCTCCTGGTGGTTCCTCCTGACTCCCAGTGCTG

a score=12363
s chr3           153658970 436 + 160039680 TGCCGTCGGCCTTGCCTAACACCATTAAGGGGGGAATGTAAGCTGGAACAGAGTGGGAAAGGTTAAAGAGGAACGTTGAGGCTAACTTGAAAGAATCATGGCTTTCACACCAGAAACTGGGCAT---AAAAGCAGCTCACCAGGCTGGTGACTGATGGAGCCATCCTGACAGGAACCACAAAGAGGCTCTTAAAGGGAGTCTGTAAGAAAGCGTTGGATCAGTGGAGCTGTCAGACC--TGAGACAACCCAGCC-----------------------CAAATGCA--GTGTGCCACACTGTCCTGCCACTGTAGCTGCACGGGTAGGTCACCC--TTTCACCATGCAGCACCTCACTCGTGAGAGCAAGCATCTCAGGCTAGCTCCAGCCCGCAGACAGACCCTTGTTCTTTAGCCTCTTGCTGTGTCCCTCAGCAAATGTCACTCAGCACACCAGACAAGTCCTGGA
s HiC_scaffold_1 140482869 438 + 233722169 TGCAGTTGGCCTTGCTTGACACCACGAAGGAAGAGA-GTAAGCAAgaacaaaggggaaaaggttaAAGAGGAAAGTTGAAGTTAACTTGAAAGCACTGCGCCTTTCACACCAGAG-CAGTCCATGTGAAAGCCAGCCCACCAGGGTGGTGATTGACCAAGATGCCCTTACAGGAAACATAAAGACGCTCTTAAATGG------------------GAATCTGCAGAGCTGTAAGATCTTTGAGATAATCCTGCCGGGCTCTACCTTGTGCAGAGAAGGAAATGCAATGTGTGTCACACCATCAGCCCAGGAGAGC----------AGTCACCCAGCTCCTGCTGGCACCATCCCACTCCTGGGGAGAGAAAGGCTGGGTTGACCCAATCCCCTGGGGAGAGCCCTCTCCTTAGGAATCTCATCTCATCACTCAAGAAATGTTGCCCAACACCACAGGGAACCCCTAGA

a score=39137
s chr3           153662213 2105 + 160039680 GAGATTCACAGAAACTGCAGGGTTCTGGGACATAATTCCCACCAAGGTTAAATTCTCAAGAAAGAAAGATACCGAGACCAACAGACTAGTTTGC--AGGAGAA--AATAGGAGG-----CATTTCTTATTAAA-AGCAGCAGCAAGCATCAGGCCCTCCCCTGGGCTCACCTCCAGATTCCTCTCCCAGAACGGA--CAGGGATGGAG-CCTCCACCTGCGAGG---CTTCACTGCTGCTCATGAGCTCTTGAAGGGGTATCAACCCCACACCAGATATTGTAAAACACATTCTCAGAATGAGTGACTGAATGGATAGAGAATAAAGCTGAGCCTTCTAACCCTGACTGAGCTCCAA--GCGGGCCTATGGATGTAAGGA--------ATAAACGCCC--------AAGTGCCGGTTTCCGGCT-CTAAATCATGAGTTTGGAAAGGGCGTCACCACTCCTTGAAGATGCGGA------------------GTTCACTCTGCCTCCCCCT------GGCCTCAGAGCAGCCATCC-TGACCCTGCTCTGACTTTCCTCCCTCAGTGAGGCCAGGGAGCCCTGTCTTTATCCTCCCTCTCTGTGATGCCCC--------TACCGCTCTGCCACCCGCAGAGGCTCTTGGTGCA-TTTTGCCAGAGATG--GTGACAAATGT--GGGTTCAGAGCTTTGAAAACTGGGTTCATCTGCAGAGCGCTGT-AGATGCTGCGTGCTGCTCTGAGTGAGTACACTGTAAAGAGAGCCACTCACTGAGT--------AACTGAATGGACTGAGGTAA---GGAGGTGCCCGGGAGCTAGAGTTCAGGTCCTCATGTGCGCATGCTCTGTACCGCATTCAATACTACCAAGGTGCAGCCCTAGGGAGACAGACAGGAGGTGGAGTCTCAACATTGCACCTCTGAAAGTGTGAGCCCAGAGAACCCGTGACCCCAACTCAGCAATCAGGAAGCGACCAAGCAGGCTGAGAGGCCCGCCAGCCTGGCA-----------TCTCCTCAGCATTACTCAAGCTGCCCCCAGGCAATGAGCGGCCCCCTCA-----CCCAGGCCTCCTCGGTGGGCACC--------------TCAG---CAGTGAGAGGCTCCTTCCCTCGGTAGCTGAAGCCACTTGCTGGTGGAAAAGACT----TTCCTTTCAGACAAAATCTCCACACTGGTA-TTAGGTTGTAATTCTTCTTTCCACAAGTTTGTA-CTCAGCAT-GGAGTGGGCTGAGAAGAAACGTACTAAACTGTTTGAAATATGTTTGTGAACCATATAGGAGCAAAAGACAGAG----CAGAGTTTTTTGCTATTGTAGTCCAAGGGAACAGGTCCATAGATGCTTGGGTTTTTG-----ATTGTTTCAAGTCTTCTACTGGGATAT-------------------------CCCTGAGGGGACCATATGAGGAAAAAATAGGTGTAGTGAGCTTGCCTATTTTCTCATGTGCTTTGA---ACACCCAT-----------TTCAGAT------------------GTGCTacacacacacacacacacacacacacacacacacacacacacacacCTCAGTGGAAAGCCTTCACTGGATCCTGC-TAGACAAATACCATTGCAATCACTTAGTAGGACTTTGAAAAATAAGTTTGCTAATGGGACTGCCAAGCAACTGAAGAGAAATTGCATGTTCTAAAAGCGCTATAAAAATTCTCTTCTCTTTCAGGACAGAAGACAAGCTGGTGGTGAGGGAATTACTTTTTAAAGAAATCTAAAGTTCGTTTCAAACCCTTTTCTGCCAAGATCCA-----TTAACTGCAAAAATAGGTTCCTTCCCAGTGCCCCAAAGCCTGCCATGAGGTAACAGCCTAAGTTCAATTTCCCTAAAAACTGTTTTCAA----AGAAATCACTTTATCACTAGCTTAGGCATCTAATTTCCTTGTGATAAGAAAGTAACCCCCC-----------TTCACCCTCTCCCTGCACTGGCTACAGGCCAGCATTTTCAAGCGGAGGGAGTCGGGGCTGTAAAGGCCGCCTGTTCACC-GACCTAACCCTCCTCCTCA----ACTCCCTG-GGCTCCAAACCACCGGCTCCTGACGCTGAGGTAAACTAGGAACAGAAAGGAAGTGAGCCCTGTGGGCCAGGAACCCAGGCCTCCA-CAGTAAGATCTGCTGATGCTGCTTGCCACATAGCTCAGGCTAGCCCAAAATGTC---------ACCCCGCTGAGTCTTTAGAGCGACTGCAGGTGCCCAGATAAAGTACTTAAGAT
s HiC_scaffold_1 140488499 2232 + 233722169 GAAATTCCTTGGAGGTACAAGGCTTCAGAGCACCATTCTAATTATGGTAAAATT-TCAAGAAATGAACATTCCTGGA-----AGTACAGTTTGCTTAGGAGAATCAGTGGGGGGGGGGAAATATTGTATTAATTAACAGAAATGA-TGTTAGGATCTACCATGGGATCAC-TGTTCATCTCCCTCCTGAGATGGAGCCAAGGTCAGAGATCTGTTCCTGCCTATTTCCTTCCCTGCCGATTACAAACTTGTGGAGCAGTGTTGGTCCCA-GCTAGGACCTGATAAATACTTTTT--GAATGATT-ATCAAATGAAT---GAACCAAGCAAAG------GGCATTTATTGAGCTCCTATGATTGGCTActacatacaaaaattaaaaagatacacTCCCTGATTATAAATGGTTAGAATCTGTCTTCTTAATCAGTCATTTGGAAAGAAAGTTACAGATTCTTGCTGATGAGAGACAATTGATGTTCCGGTTgttccctctccctgccccttcccTTGGCCTCTGAGTAGCCATTCATGCccctgactt--ctttctttccacag--AGACTAAGAAGC---ATCTTTCCCATTCTTTCATTTCATGCCCAAAGACATGTACCATTCTCGAGCCCAT---GCTTCCCAGTGAGGTTTTTCTAGTGGTAAAGTGAGAAGTGTACGAGTGCAGGAGTTGAGAAGCTGA-CTGACTTACCGAGCATTTTCACATCCTGGACGCTGCTCTGAG------CAATTTACAGGGACCAGTGCATTTAGTTTTCAAGCAACTGAAAGTCCttaatttttttggtggtgctggacAGTTA-ACCTGGGGCC-----GTGTGGATGCTA---ATCACGTGCTCTGCCACTAAGCTGCACCCCATG------CTACGTGGGATAGCATTTTCAC----CACCTCACAGA---TAAGC------AGACTGAGGCCCAAGGTGGGCATTGA-----TGGCCAAGTGGGCTTAATGCCCAGGCCAGCTGGCACAAGAGCCCCATTTGTTCACCATAACCCCAGCTGTCCCTCAACGACAAGG-----CCTCAGGAAGCCCAGTCCTCATCCTACCGCACCATCCAGTCTCTGTCTCAGGCACAGAGGAGATGCCTTGCCCTAGGACCCGGCTATCACACTCTGCTGAGTAAGACTCTactttttttcaaacaaaaactCCACAGTGATAATTAGACAATGATGTTTCTTTCCAGAACTTTTTATCTCAGCACAGGAGTGGGCCAAAAAGTAATGTACTGAATTGTTTGACAAACATTTATGGAATATacaaaggcaagagaaaaaaacaacacagtGGTTTG-TATCATATTTCAAAGTAACTATT---TGACCactt---tttttgcaaatatt-ttttaagttcttttctaGGACATAgcgttttgttttgctttttgtttccacAGAAGAGACCACTTGAAGAAAGAG--GGTGATGTAGGCTTGTCTATACAGTCATGTGCCCTGACAAACACAGATGGACAGAGGGATAcacatagagacagacagaccatggtgccacacacacacacacacacacacacacacacacacacacacacacactgcag----gaAGCTCAGATGGGCCCTGAGTAAGTAAGTGCCTCTGTGATCACCTAGCCAGGCTTCGACAAATGAGTTCGCTAATAGGGCTGTCAAACAAGTGGCAAGGAACTGCATGTTCTACAAGCACTATAAAAATTCTCTTCCctttaaggagaaaagacaagCTCATGGTAAGgagattactttttaaataaatccgAAGTTAGTTTGCAACTCCCTACTGCCAAGATCCATTTCTTTAAGTGCAAACATAGGTTCCTTCTCACCGACCCAAATTCCTGCATA----AACAGGATAAGTTCCATGTTcctaaaaattgttttcaaaagcaaaaatcgCTATATCACTAGCTTAGGAATCTAATTTCCTTGTGATAAGCAAgtaatcccccccttttttttttcttccttttcctttttctggttgCAGGCCAAGATTTTCAAACAGAATAAATCAAAGAAGTAAAAGCCA-GGATGCACCAGATCCAATCCTTCATGTGAGATGACCCAATGTGGCTGGCAGTGATGCGATCCTGAAGCAGATGCCAAGT-GGAAGAGAAAAGGAGCCAGGCCCCCAGACACTGAAGCATGTCCTCCACCAATGAGCTCCACTTATTGCTCTCACCG-ATACCCAAGACTGGCTTAAGTGGCCAAAGACACGATTCTTCAGTGTCTTTCAAGCGACT----CTTCTTGGATAAGGTTTTCCAGGT

a score=16518
s chr3           153664482 1517 + 160039680 CCTAATGAATGCTTTAAGTGGAAAGAAATCTTTAGTGTTTCTGTTTGT----------TTCTCTTTTCTGTCGCTCATAAACCTGATTCCGACTCCCTGTACAGAACGCAAGCTTCAATCGGCAATGCTTTTCCCTTTTT----GTAAAAAGTGCATTCCATCTCGTCAGGTCTTGACTCCCCTACTCTGACGGTGATGCTGTACAAGCTCAGATGGCTAAAGAGCAGAGCATAGGCCCTCTGTAAGGACCCGATGCACAGAGGGCCTAAGGCACTGTCGGAAGGACTATGTTAAACCCTAAGTCTAGCACGGCAGTGTGTGAAGGCATCTGCCAACTCAGCATAGCACAGATGGGC--------TCACCTCCTCCATGGGTTACAGA----GAACACCTC-TATAATCCAGGGGAAGGGACAGC-CTTGGAGCTTCCCTCACCATGGAAATGGTT----AGATAATGCTGTAGCT-AGCACCATGAAA-----CACAT------GGGAGACAGCTAATCACCACGCTTTGGACACATGCCAGC----CGGTACTGTT---AAGTACCCACTGTCCAGTTGGAAACCATGTTTTCAAGCTATCAGTACCCCCAAATGTTCTCATCTGGATTAAATAAAGTCACTGGGTTAATTAATAAAG-----------TCAATGACATCATCCTGATTAACTCAAGTCATTGACTACTTCAGGAAATATGTTGTGGATAGCTAGCTATTCAAGTTACCACGTGCATGAGAAACAAGGCTAAACTC-TGTTTTTCAGGGTCTAATTGTGAAGTAAGAAACACAGAAAGACATAGGCAATTCCAATGTAATCTGA-AATCTATATGCTAAAGCTAGCCCAAGGATCCACGGACACGAACAGCTAAAACTGGGGT--GAGTGGTAAGCAGG-AGCTATCTTGCATACAAAG-TAGCAGGAGCAGACCAATCCTACCAGGCTCCATGCAGGCTTCATGTGGCTAAAGAAAGGCTGGCCTTCCTCCTCCTCCCTTCAGGGGCACTGCAAAGACAGTTCTAAGCCAAGGGGTGGGGATCGGGGTTTGTGGGGCACAGGGGGGTGAGTCCTACAAAT--TGCTGATGAGAGATAT-GTGAGCACCAGGCAGCCAGAGGGCAAAATTGCTCCTTGCTGGAGAGCTCTTGATGCCCAGCTCCTCAGAGCACCAGATTAATCTCTT--GCCATCAAAATCAATA-------AGACAAGAGACAGACAGGGGAAGCGTGCACTCCTGGAATCAGAAAACTAAAATTAAGCCAATTATATTGTTCAAAGGCCTGGATAGCA----ATAAGG-----------TCCACC------TGACGTGAGCGTTTA-----GAAACTGGAGGAAGCGAGGGATCTGTGGTCTGCTCCGTCATCCAGG--------------TACTCGTCCAGACAC----CGAGGATACAGGTCAGGCTCATGCCTGAATGAGAG-------CGTCTGACTTGACTCTGATTTCCTCGGCCATCAGGACAGACA-GAGCTGAGCGTCTGAGAGCC---ATGGCTGCAGACAGCATCATTTATAGGTGAGGAATCTAGAGTTTAGAAAAGGCCGGTGTCTGGCTCGCTTGCTTGTGTCCAAACCAGAAC
s HiC_scaffold_1 140492113 1531 + 233722169 cttATTAGAAGCTCTAAATGACAAAAATccccaagtatttttttttttggtctttttatttttatttttgccacaaATAAACATGCTGGTGACCATCTGTATAAGAAAAAAGCTTTAATCGTccacatattttgttttaaaaaagaaaaaaatgt--------ttgttggGTCTGAACTGACCT---CTGACCTGGATTCTCTACAACTTCAAATGACTTGAAAACA-----------------AGTGTCATGAGGCTTGCTGGGCTTGAGG-----------GGGTTGCATGACTGTCTAGTCCTAGTTTCCTGGTTTCTAGGGTCACCTCTCAGTCTCACCCAGGGCAGATAGGAATCGAATGTCATTTCCTCTCTGGGTTACAGACAAAGAGAACCTTATCTAATGTGGGAACGGAGACAGTTCTTAGAAAGTCTC-CACCTCAGAAATTCCTGCCAATGCAGTGCTACAGCTCAGTTTTAAGAAAAGGATCACACTGGCTAGGGAGAAAGTCTGTCCTGA-----TGGAGACACCCAAGCACCCTGGTGCCTCTCAGAAGGACGGGCTGCCCAG-----------------AACTTCTCAGCAT-----AAAGTACA---------GAAATCAACTCTCTTGGCTACCAGAAAAAGCTCTCCATCCATCCCTGTTTCCATCTGGATTAACACAAGCTGCTAATTAtatcaagaaataatttttgacaAGTTA--CAGGCAAGTTACCAAGTAT-CAAGCAACAAGACAAAGCCCCTGTATTTGAGGCCTTTAACCCTGAGAAGGAGACTCAGCAATAAACAGCCGATTCCAATATAATCCAACAAGCACTGTGCTAGAGGAAGTACAGAGATCAATGA----GAGTGGCTAGAGATGAGGACAGAAAGGTAAGCAGGGAGCCACCTGGTTAGCAGGGGTGGCCAGGACCAACGTAACCCGTCAGCCTCCAACCTCGCTT-------------------TGGTGCTGCCCCTTTTCTTGCCACTCACCTGACAAAAGCA-----AAGCCCAGGGGCACTGCCAGGGAA--GCCACCCACAAACGGGCATGTGCTGCCCATAATGCTAACACAATACCTTGTGAGCACCACACAGGTAGAATGCAAAGCTTCCCTGTGCTCAGGAGATCTTGTTACCTACTTGCACGGCGCATCAGATTAATTTCTTTCACTACCAAAATCAATAGGAGCTGAGACAAGAGACAGACAGGGGAAGCATTCACTTCGGAAGtcagaaaaccaaaattaaaCCAATTATACCGTTGTAAAGCTGGGTTTTCATGGTGCAAGGCACCGTATGAATCAACCAATGATTGATGGACTCATCCAATACCGGAACTTAGCGTAGCGGCGAGGAGGGGAGATGCTCTGTTGTCTGGAATTGGAATTGATTCTATTCCTCCTTGAGTTGGGTGGGGATTCTGATCTTATTCA----------AGAGCTGTTCCCATCCTCTTCTGCTTTCACTTACACGGACACTGAGAGCGAGATGAGCACAGGACTTTAGAGCTAAAATGTGAGCACACAGCAC--TTTACAGGTGAAGAATCTGAGGCCCAgaggaggaagaaactgaggcagctgGCTAGTGACAAAGCCAGAAC

a score=39167
s chr3           153673009 5326 + 160039680 [encoded data, 6127 characters]
s HiC_scaffold_1 140503150 5336 + 233722169 [encoded data, 6127 characters]

a score=16501
s chr3           153679224 544 + 160039680 ATTTGCTACAAAGG--ACCCAAAG----TGTATCTGGTTGTCTGTGATGCCCCTGACTGAGCCAGAGAGCCCAAAGATTTGCTGAGGGCC--CGTGGCCCCTGAGAGGCCAATTGTCTGCCCAAGTAG------------AGCCAACGCTATCCACCCCTAGATCTCACAGGGAGAGCCACACTTCCtgtgaccttgagcatgtccttcagtttctccaagcttcagtacctcctgaaaaagaggcgaaatcttgtcttcccc-gGGATCCAAGGAGAATGACACTCCACGCAAGTGTTCACAGTGAGCCGCTAATGTAAGGTATTTGTTACTGTGATAAGTTGGTCTCTAACCCATCGGCAATGGCAGCTATTTCTCACGGAGACCCTTCTAAGCCTTCTGTCACCACAAAGCACATTATACCCTGCCAGGCTCCACGGA-TGCAGAGA--ACCGTTCAGGACAACAAACGGCTACAATTTTCAAGGGAGCGCCAGATCACTCCGGACATATCCAGTTAATTGAACCACAC-AGACATTCCCACCCTTTG------------TCTGACACTCTTCCCCAG
s HiC_scaffold_1 140509749 538 + 233722169 ATTTGCTACAGTAGTAAAACAAAGCTAATATAACTGGTTCTCTGTGATGCCATTTTTTAAGCCAGTTAGT------AGTTCCTGGAGGTCATTCTGGACTC-AAGGGGCCCATTGCCCTTCCAAGTAGCAATCACAAGTGGGCAGAAGAAAACCA-------ATTTGA--AGGAGACAAGAGCTTCAAGTGACCTTGTCCAAATCCCttaatttctcttaatttc-------tcTGAG-------------CTTATCTACCTCTAGGACCCAAGGAGA----CATTTTATGCAGGTGTTCAATGTAAGCCATTAACATAAGATATTTGTT-TTCTGATAAATCAGTCTCTAACCCAAAGGCAATGGTAGTTATTTCTCAC--AGACTTTTTTAAGTCTTCTGTCTTCACAAAACTCGTTATAGCCCATCAAGCTCCACAGAATGCAGAGAGTAGCATTTAGGGCAATAAATGGCTATAATTTCCAAGGAAGCACAAGATCACTCTGGACATGTCCAATTCATTGAACTATAAGGGAAAATACCACCCTCTTTGGTCTCATGACTCTCACTTTCTCCTCCAG

a score=37030
s chr3           153681280 3157 + 160039680 AAGGAGATTTCAAACTCAGCTTTCTTATAAAAAAAAATTTACCACTGAGCAAGAGAAAACAAT------AAACTATATTCTGATCACCAGGAGATTTGAACAGGAAATGTTAATAATCAAAAAAATAAATGATTCGGAGAAAACACAGAGCCTTATCAACCCTCTCATATTCACAGGTTTGAGGTTGGTAGCAG-TGTCTAACTGCACCTTTTACAAATTCCATGTGTCCTC-GCATGCAAATCCAGGGAGCCAGCGACTGCTGTTTGTCCTCTGCAGTGGCTAGGGCAATGCAGTCAACATAGGACTATGGCACAAGATGAGGCCTGGTCTTGCACCCCAGACCCAGCAGACTGGGCCTGACCGAACAAACTGCCATTCATTTGG----------------------GATTACCTCTCCTGTCTCCAAACCTGCTTTCTGGAGTT-GGTAAGGCCGGGAGGATGCTTACCCGATGATGTTCGGAAGCTATGGACACAGACTTTGGAGAAGGCAGACTGAAAAGCCACAGACAGCACTTGTCAAATTCTAGGTGCTG--ATAACTCCTGCACATAA----TATTATCCAAAACCATTGCTACCAGTCGTTAGACGCTGAACACTGCTAAACACTCACTGTGTG----ATAAAG--TGTTTCTGTACTGAACCACGTCCCCATGAAGTCC-CCTTATCAA------CACGTCACCATCAG---AGCACTGAGATTCGGAAgggccagagtgtagcaatgttggcggagtacttccctaacatgcctgaagctctggggtgctgccctcagcagtggctaacttgggcaccacggtgcatgcctataatcacagcaccagggagataagaggaagaggaggatatgaagttagggatatcctagactacatagtgagtctgaggcca----gcctgggctactgctaagtaaataaagaaaaaaaaaAAAAAAGAAAAAAACAGAAGGGTCAGATAAC-TCGCTTGAAATAGAGTATACATACAGTTCCGAACGCACAGAACTGTCTCTAGTTATTAACTACCCATTCCGCACTGTGGACCGATCTCTAGTTTGTCCATCTGTAGGCTAGACGTTCTCAAAGCTCACCCACCATTGGTAAAGAACACCCATCCAAATTTCCAGGCTGAGACCAGTCAAGCACAAGGGACCAT-CTGTGTGCGAAGCTGCT--TGCTGTGAGCTAG--ACAAAATCAGGA----AGACAAGGCTGGTGAAA-------GTGAGCCACGC-TCTGGGTGATGGTAACACTGCTTGCTGTTTACACCACCGCCTAGAAGGACCAGAGTTCTGTGGGCACTGGAGCAGGACCTAGCTCTTCCTG--TGCTTCACATGCAAAGCCAG---------GGTTCGCAC----------TGTCTGG----GCGTTCCCGCTTACACAGTA-CGTTCCTCCCGGC-ACGTCTTCACTCTCAGGAAACATGAGGTGAGCCTGGCTTTTCCCAACCCTTGATATCTTCCATCTAACTCA----ACGAGAGACCTGCTGGGACTTTAGCAAGCTTTCTGAACCTCCGCA-TCGTAAGAGAGAACTGAGGCAAGAGTTATTGGAAACGTCTGCA-----AACATCTGCATA--CACAGGAAATGATTTGATCTTGGTGGTAGGCACTTCCAGTC---------CTGGGTTACGCAGGAAGCAAGG------------AAAGAAATAATATTACCATGTTATCCAGTCAACACGTGGAT----TCTGGTAAGATCTGGAT---GAGCCTGGAGCTTCTGGAGGTCGCAGAAAATAT---CACCCCCCCCCAACCCTCCAAGTTTCAGCTCTTGTTTTCTTGGTGGCCTTGCTTCTTTTCTC----TCTGCTGTCCACACTGATAGACAGAACACACCCCCAACAGCGCTTCTCTACC------ATCCGCTACTT-CCACTAGCAGGCAAGAAGCCATGCTCCTGTCTCAAT-CCAATTCTGATATTCC-AAGAAATCAAGTATGAAAAGTCCCTGGATCAATCAGCTATGGTTG--------GGAAACAATCAACCCATATCTGTTTCCATGCCAACTACGGAGATGAAACAATAAAGAAGAGGTCTCCATACATTTCCAGGAGTTTCCAATTTCTCTTTCCAGAAGGAGAAATGGCCAAG--------ATACATAATATGTGTCCCTACTATAAGCA--------------AGGCACTACCTGAATGGAGAGGAAATAATTCAATTATAGAGCTCAAAGTTTTCTCTGGGATCCAGGAACTTCAGGAACAG----------CCAGCCCGGCTCCTCCCTCCTCCATCCATCACTCAGCTCCAGGCACTGG---CAGGCTTCATTCCCTCGGTGACACAGTTTCCTTCTCTGACCAAGGCCTCCACATCAGGCCAGCCATATTCTGTGTGTCCCCAGACCTGACCATCTTCCCTTAGCCTCTCTTCCAC-------AGAGCCTCCCTCCAGCCACTGTCCTGGGCCAACCAGGGTCCTGTGACCACTGGAggctgagagggctgagagggctgagaggC--CAGAGCAGATTTGCCTTCCTTCGCTCTCATACAGTAAAACTGACAGGGGCAGAGTCTGTCTTTCCAGTGAAAACTCAGCTCTGCAGAACCTCCACATCAAAGTCTCAAGTCTCATGTAATGG--GAAAAATAATAAAGTGCATTTTCAAGAAGaaaaaataataattaaaaataaaCAAGTGAACTAGACCAACTCCTTAACTTTCCAGGGTACAGAATATACAA---GGGGACATGGCCTAAGGATACACAAGCCACCGCCCACACTCCATTTTC-AACGCAGAGCACTGACCTAGACAGGAACCAACCGGGAGGAGATACACGGGGCAAGAAGCACA-CTCCACAGGCATGAGGGATACTTTGTTACACCAAGGCAACC-TGAAAACAAAGTTAG-CTGTGGTCC-CCAGGCAGCGGCATCCCTGCCAACAGAGATGCCAGGCTCACACTACCA---CCAGGGTCCTACCCCAA-CAGGCCATCA---GCCACTCAGCTGAGAAACAGCCATCCCAGAACATCAAGGTCCTCTTTCAGCTACAATCAAAAGCCATGTCTCTAGCCAGCCATCACTCAAGACCCACAGGCCCTC-CTACATGTAAATGACTCCT-------------------GCGAGTTTGATATATGTTAGGGATGCATGTGGCAAATTTAAATTCTTT-CTCTTCAGTTGACA-TTAAACGATAACAACGACCACCCCAAATTTGTCATGAGTCATGCTAAATGGTAAAGTGGGGAGA------TCCCACTTTATACAGCAACACACCAAAATATATTGACATGTA-AAAATATA
s HiC_scaffold_1 140511305 3050 + 233722169 AAAGTAATGACAAACACAGGTTCCTTG----GGAAAATATGTCATTGAGCATGGGGGAATACTTTAGTAAAATTATATTCCAA--AACAAG-GATTTGCACAAGAAACATAGGCACTCATAGCAA--AGTAATTTGGGAAAAACAAGGGGCCatataaatatttccatattcACAGGTGTGGGGTTGGGTGAAGACCTCTaactgaaccctctgaaaatGTTACGTGCCCTCTGCATATAAATCAATGACATCCAAGAAAACCCCAGGTCTTCGGTA----------------CATCGAATTGGGATTAGAGCCT----------CTGGGCTTGTACCC-AATTCTTCCAGACACTGTCTGACCTTGAGAAAT--CATTTCTTTGGCTTCTGTAAAATCAAGAGGCTGGATTATGTC-AAGGATTCTTAATCTGCTGTCCAGAGACAGGTAAATCAGGAGAGATATTTACCCCTTGAAGGTTTAAAGATAGGGATACAGGCATT-----CATTAGGTAAAAGAGTCACA---AGTGTTTATTAAAATTTAGGCATTGTGGTAACTGCTTTATCTAACAGTTACTATCCATAAAAATTGCCA------------------ATACT--TAAAAACCTACTATGTActtcataaatattatttagGAATTGTA--ATATTCCCATGAACTAGGCACTATTAATGCCCTCATTTTACCAATAAGAAAGAGCCGAAATTCAGAAAGATCAGA----------------------------TAACCTGCCTGAAG----------------TCA------------------ACCAATGTGTA------------------------AATAGCAGAGACAGGA------------------ATTCCACAC--------AAGTCTGAATCCATGCAGCTTGGTCAAATCCT-------------------------------------------CTACATTACATTGCTTCCCAATTAGCTCACACAC-----------CAGGTAACTACC-CTAGTTGGTTATCACAC----CACAGTGTGGAACTGTCTTTGATTTGGCCATCTGTAAGCTAGACTTTCTCCAAACTCAGCAGTGGCTGGTAGAGACTGTTCACTCAAATT---AGG---AGACC---------CAGGAGGCCCTGCCTTTTGCAAAGTTGCTAACTCTGGGAGCTGAGAACACAGCAAAGGCGCCAAATGAAGGTGGTCACACTTACACATAAGCCACATATCAGGTTTGTGCTCACACTATTT-CTGTTTGTACCACCGTCAAAAGGCAGTA-AGACCTGAGTGCACCATA--AAGACTCAGATCAGAGAGAATGCTACAggtaaaaattcatttcttactTGGTTTTCACATTCATAAATTATCTTGCTCAGAGTTTCTGCTTATGCAGCAGAGTTCCTTTCTACTACATTTCCATTCTTTAGAAATGTGACATGGATTTAACTTCTCTCAACCTTCTGTATCTTCAATCTAAACTAGAGGACGATGGACTTCCCATGAATT-AATAAGCTTGGAAGACCTTAAAAATCAGAAGATGGCTATGAACCACAA-TTATCACATATACCTACACAGAAAATATCTGCAGATCCAGAGAAAGTAATTTTATACCAGTAACAGAAACTAACATTGTACTGCTGGCTAGAATAAATAgcaagtgagattttttttttttagaggaatACTGTTTC---ATTAT-------AGACTTGGATATATGTTGGAAATATCTTGAGCCAGGGCCTGGAACATGTGGCGGACCCA-AAAATACAcgtactctctctctctttttatggTTTCACACCAAATTCTCTCGGTGTAATTGCTTCATTCCTCCACTTCTCCTCCTCCAGCCAGAAGACAGAAGAAGGCTCCAACAGC--TTCTTCATTTTGTAGGTCCTTTGCTTGAAACCTCCAGGCAAGAAACT---TCTCTTTCTCAATTCCAGCTCCAATACCCCCAAGGAACAGAGCAAGAAAAGCCCCTGGATCAAACAACTGTAGTTGTTACAAGAGGAACCTAAAGCCACATAGCCACTGCCATGGCAACTACGGAGGAAGCCAAATACAGAAGCAGTTTCCAGAA----TGGAGAGTGTGGGGT------------AAGGAGAGGTGGTCCAGGCGCAGGCAAATACAGTATGTCTCCCCTCTGCATTTGTCTTcttgttttttgactttttccttaaACGGGCAGAAATGTCTAGTTCATTGA-CTCTAAGTGCCTGCCACAGCCTCGGAGCCTGGGGACCTGGCCCTGATCTCCAATCTGTCTCCTCT-TCATCTGCCCA-CACTCGGTTCCAGTCAGTGTATCTGCTCTTGATCAACTCAGTGACAAGAGCTGCTTCTCACATCAAGGGCTCTGCACCAGGTCACCTGAACTCTGT----CCCTCCATCTGACA--CCTCTCTCATCCCGTCTTCTCCCACTCTGACGCCCTCCCTCCAG----------------ACCACAGCACTG--ATCAC----AGCTGCAATGAATGACACGGCCAGGGAGCTTCAGAGCTGAtgcctttttctttcctatcacACGATAAACTTAATAAGGACAAAGCCTGTCTTTCTAGTTTGTGTCTAATGCCACAG----TGCTCAGTACAGTCCCCTGCAGGAGCAAATGCTcaaaaaatacttaa---tattttcagGTGAAAAAA--------------TGAACCTGTGAACTAGGCCAAATCCTAAGCTTTCAGATGCA-ATAGTATTCAAAAGGGAGGAGTGGCCTAGAATCAAATAAAGTGTTTCTCACACCTCATTTTCCAACTCAAAACACTTGCTTAGGCAGGAACCAATTGGCAGGTGAT-----GGCTGGTAAGGACAACCCCAAAGGCACAAGGGACTCTTTGTTAcaccaaggcaaccctgcaaaCAAAATCAAACTGTGGCCCATCAGAAAGCAGAGTGCCTGCAGTCAGAGAAGCCAAGTACATGTTCCCATCCCCAGCGCTTTTCTAAAAACAAGCTATTATTAGCCACTCATCTGAAAACCAGAAATCTCAAAACATCAAGGTCCTACTTAACCCAAAATCAAAAGATACATCACCAAATGGTGATTGCTGAAAACCCACAGCTCCCCGCGAAATGTAAATAACTCTTTCTGTGGTCTCAATACTAAGTGGCTTTGGAATACGATTG----GCATGTcgtaaatttaaattatttccttttgaattgacatttaaaaaatgacataaa--aaatgaaacaactcaTGA---ATGCCAGGTGGTGAGTTAGGGGTGGCGTCCTCCTAGTTTACTTAG--ACA-AGTGAAATGTATTGACATgtagaaaatata

a score=7999
s chr3           153686176 587 + 160039680 CCTAACAAGCAATCCTATCTCTGTGGTCACATTTACTGTTCCCTGACAAAAACAAAGACCAATTTTAAAGGACAGAGGACAAAATACAACCAGGGCCATTATATTCAATGACAACAAGACAGA-ACACCCTGTTCACTACTGGTCCCAGAGGTGTGGCTGGGCCTCAG--TCTCAGCATTGCCTGGACCCGAGTCTCTTCCATCAGTCCTGGCAAACCTAAAAGCAGAAGCCCACCCATCACAGGCACTCTCCGGTTTGTCCGACCCTGTCTG------TGTCCCCTAAGAGCTTCTTCTTCAGCTGTACAAGTCTAAGCCCATAAAAGAAATAAGGGACTTAAATATGTGCTCTACATTTGAGTAAAATGTC-TGCTTTGGATTCATG-------------------TAGGACCTAAAATGAGAG-------------AGAAGGCAAAAAGC-CTTCCCAGACCACACCCCCTGGGCCTGGTGAAGGACATGCCATCCCTGTTCTGGGAAAGAAATTGGTAACAGA--ACACACAAGTCATAACTTTCAATCTGTGTAACTGCCACAGTATGCAAGTACGGAACCTGATAAAGCCACAGAAGCCACTGTGGGACCTCTTACTCTACCTAAT
s HiC_scaffold_1 140514433 574 + 233722169 CCTAACAAGACATCCTTTATCAGCAATCTTGTTTtcactt---gaaaaaaaataaaatccaattctaaaatataaactGTTGAATACC------GTCTCCATATTGGCTACCAGGGATGTGGACACTTCCTGTGTTCTGC-AGCCTTTGGGCTGT-------CTTCAGGTTCTCTGCTTTGCT--GATCCAGTTCTC----------------AGCTCCAAAAGTGGGA-CCTACCAGTTATGGACATTCCCCAGGTTGCCC--CTTAATTTGCTAATTTTTTCCACGGAGGCCTCTTCCTCTGGTGCACAAATTAAATTTCTTAA------TGGGGCACTTA--TATGctgtttaaatttt-gtaaaattccatattttgaaatcaggGAAAAGAATTTGTTTAAGGTAGAAACTAAAACTGGAGGGCAAactccaaaagaagaaaataagcactTCTTCCATCACTC------AGATTTGTG--GGATATATGGTCCCTGTTCTAGaaagtaaattgataattaaccACACACAAGTCATGATTTTCAACTTTTATAAATGCAACAGTGTAAAAGTACAGAACAGGAT---GCTGTGAAAATCATGATAGAACCCCTCATTCCAACTAAT

a score=8859
s chr3           153687960 216 + 160039680 TACTGTTTTGCAACAGAGGCTT-TCTTGTCATTTCCAAAGCTAACATCCACAAACAAGGGAGTTTCTTGTCTCAGAATGTCCCTCAGAAATCACCA-CAACAATGGTGATCAAGAGAGCTGTCACTGAATTACAAGTGGCCACAGACGAAAGCCAGGAA---------------CTGAAGT---CAGATCACCCCTGGCC-AAAGGGGTCA----------CTCGATGAGGTCACCGCATCATCTCA
s HiC_scaffold_1 140515116 246 + 233722169 TATTGTTTTACAACAggaatttcttttgtcatttccaaAGCTAACTTGCACAGACAAAGGTGTTGTTTGTCTCAGCATTTTCTTCAGAAATCCCAGGAAACAATGGTAGGCAAGGGAGCTGTCACTGAGCTGCAACTGACCACAAACGAAACCGAGAAATCATGTTCTCTGTCTCTGAAGCGGGCACACAACCTCTGACTGAAAGCAGCCACTGCTGAGAGCTACATGAGGTCACCACAT-GTCTCA

a score=32947
s chr3           153688212 2898 + 160039680 CCTTCATTTTCTCCAAGAATCTTGGAAATAGCTCATTATTTTTGTTCTACCACAGAGTTCTGGTTA-GCAAATAAGGCCTCATAATAGTGTCATCTGGAA-TCTC-----------TATGTGCCCTGGCCCTGAAGATGTAATGA-GACTGGCAAGATCGCCCCAAGCGCCATATTCAACAGAAGCATAAGTCAGTGAGGCACGAGCAGTACTTTGGGTGAGGCTACGTTC-------ACCTCCTCCAACAGGACTGCTCAAGTTTGCAGTCCATGCTTGCTACACCTC------------AAGTAATCTAGACACGGAATGTCAGTGCTCTCCCATTTATacacagacacacagacacaca------------------cagacacacgcacacacata-cacacgcacacacGTCATTCAAAAAGCAAGTGTGAGTAAAATTTAGACTTACTAATAAATGTTAAGTCAAAAACCCAGGTGGCAATGCATAGTGAGAACTGAAAACCTCACAGACAGCCCAGCCT-----------------AGGAcagtgcttctcagccttcctaatgctgtgaccctttaacagttccta-------gtgttgtgctgaccccccaaccacaca-------attagttctgttgccacttcacagctgtaattttgctactgttatgaatcgtaatgtaaatatctgatatacaggtggtcttagtgacc----------------------cctgtgacaagactgctcaagcc----accacaggttgagaaccactgATCT----------AGGATTGCCTCCCTGGTTCATCAGGACCCTGGG----CAGTGTTTCACCATTTCCCTACACTCGATCAGTGCCCCCCAGAGACTGATCCTCTCTGTTGGTCTGAAAACTGGCTGGCCAGGCCTAAGAACACTGGTATCTTCTCCTCCATACCTGCCTAGAGTTGAACAG------GCATCTTTAC---TCCTCATGGATAA--GATAATTCACCTCTACCTGTGGCTTGGGTTCACCCACACAAACTTTGAATATTTCTCATCACAGTATAGCCC--CAGACAAGGCATACAATCTCCAGT---GGGAAAAGTCTAGCATCCACTCTAAATGTA----TACAACCTTTAATTTTTCTTTGTCTGCTAGG---CTCTGAA----AGACCTTTCTGGGGCAGCCTTGGTACTCTAAGGTCACCCACTGCTAGGTATCTATCTTCTGTCTACACAGCCTGTTTCCATAGGGCTCAACTTGACCCTTG-GACTCTCAATTGTACACAGCAACt-aaagaccatctaacacagctttctcatttta-aaaagcccagtgagctggcacccccaaagccagagagcatgagtaagtagcaagct-gaatc-cgcaagaccc---catctctccCAGGACAGTGGTACTTATGGTGCTTCTGCATCCG----CTGTTCTGTGCTCAGGCTCACAGTG---ATGCA---CAATGAAGCGGCACACAGGGCTCCATGCT-GACGTTCATGTGAGTGCT--GGTTTCTGCCTCCAT-GCAGAGAAGGCCAGGTCTTCTCGTTCACAGACAGCAATAACT-CCCCAGGGAGTATCAACAGCTACGTTTCACAGTGTCCTTCATACTAAGGTGCATAAGACAGAATGAATAATCTCTCTCTTTTCTGAGGACACCATTCCAGGGAGCAGAGGGACACGAAGCATATAAAAGAGAAATGGAGAAAATGAAAAGGAATTAGATTAACCTCCTAGAAGGCAGaaaaaaaaaaaaaaaaaaaaaCAGAGAGTGAGGCGTGGTCAATCCAGAGAGGTTCCACCCAGACCTCCAACCGACAGGGGAACAAATTAAATGTGCATGAACGTTCTCGGCTCACTGCCCAGACTTC-----------CGCAGAACTTTCAAAAAGAACGTGTGATGTGGGACATGCTCA-GTTACTGTCCATTTCCC---CCAGTGGAAATTTACCTTAATAATTTGTTAGCAGGGGAAATAGTAGAAGTGCAGTCAACACGATCCCTTCCTAAACCTATGCTGGAAAGATCAACTCCTCAGCCCTCCCCTGCGCATTCCGACTCCACAACCCAACTCACAGAGTAGCTGCCACTTATCTGCTTTCTCCAGCAGCTCCTAC---------GTGACTCAC----------------GAGGGATGGCCCCTCTGCAAGTATGCCTGCAAGCCCTGGCTCTGCACAGTACCCT----AGCAGGCAGAGGGTGCTGGGAGCAAGCAAGTCAGGTTGGCCTGAGAACTGACCCACTAGGTCAGAGGAAGCACCTCAAGATACGACAGAGTGGATAAGGACACAGCCAAATGGACAGGGGACATAAGAGATTCTGGGAAAACAGAACTTGGCTATTTCTCTATACTCAGAAATGTTCTGTAAGTTCTGTATGTGCTCCATACATTCTAGAGTAATGTCCAG-CAGCTCTGGGGACGATGAATCCCTTCAGCTGCTTCTGCCATAGCTCTTTATAACCAGCAGCAAGGTCCTCGCCCTTCTCAGCTCAGCAGCAAGGTCCTA-GCCCTTCTCA-----GCTCAGTTTACTGCAGGCTTTGGTTTTCTTCAAGGAAACATGATGCCCTTCTACTTGAAGAAGTCTCCAGTTACTCCTGAGCACAGGGAGGGAGCAGGGGGCTCCTCCTCCTTACTGTGACTAGAAGGAGCATCAGCACACACCA--AAGGGGCCTCCTC-TTCTGCCATCAGC-AACTCCTGTTTATGTTGATGGAAGCC-------------AGAGCTGCTAAGCTGCAA-------GTGAAGCCAGGGTGCAC-----TGTTCTCTGGGACCACAAGTTATACACCGCTCCTCCCAGGAACACAAAGGCTGCACCAGATCTGTCAGAGAAACTATAACTCATCTAATTAAATAATATGAAAGCAGAGGCCTAGCCTGGTAGCTTTCTGATTAGCTGCCAGGCTGATTCAAGCAAGGTGTTCCAGAGGGAATGCTCTTGGATTTCAGATGCAaaa-ttttcattgaattcagacaaacacacatccatgcacacacacacacatgcaccatctgtatatacatatatgcatatatactcacat
s HiC_scaffold_1 140515748 2754 + 233722169 cttttcctttctgcaA--ATTGTTGAACTAGCCCAT-------------CCACTGGGTTCTAGTTTTGTAACTAAGACCTCGCAACAACGTCATTTGAAAATCTCCCCCAGGTACATACCTGCCTTGCCACTCAGGATCTAGGAAAGTTTGGCTAGGG-ACTGCAAACTCCATTTTTAATGGAAATAGAAATCACTAAGACACA--CAGTGTTCTAAGTGGGGCTACGTTCCCCGCTTACCTCTGCTCACAGGATTCATC---------GGCCATCTCTGTTCTGCCTCCCCCACCCACTGAACTTACCTAgacatgaaatctcagtgcttttCTCAGCTTTCACAAAAACA-ATCCActcaatgctaagtgaaataaatcagacacacaagcttaaatgtcacatg-----atgtctctta-----catgagaaagtcaaatt-----------gtaattttaagagcaaaatgaaaggtaATAGGATGTAGGGAGG--TAGAACTTTCTCAGACGGAAAGGGGttcaagagatgaagggagaggagagg----------------aatgggGGG------TGAAAGATGgaaataagatgtgttatgtacaggcACCAGCTTCACACAGGAATATGAAcactgt----actgcaaacatgca--cttaCAACAATTGTGAGTAAAATTTAGAGTTACAAAAGAATAGCAGgtcaaaaaaacaagcaaaaaaaaaaaaaaaaaaacagagcacaGCATTACACTAACTGAAAATCTCACATTAAGCATTACGGTTCCCAGGGCCTGCAGGGTTTCCTTACTGCTCTTTTAGAAAACAAAGTATCCACTCTGCCACCATTTCCCCaaattc------tccctctc---------tccttcctctt----------ctttct--------------acACCTCTGTCTACTTTTCTGCCCCTTCCCAGAGCTGAACAAAATACAGAATCCCTTCATTTTGTCATGTACAAAAGATCAACAATATTTTTGTGTGACTTGGGTCC--CCACACTATTACTGG-CATTTCACCTTCTACTCTAACTGAGCTATCATGGTAT-TAGTCCACACCCTAAGAGAAAGTCTC-------TGCCAAATGTACAACTATGACATCT---TCTCCTTTGTATTATGGGGGTATATGGACCACATACCACCACAGGGCAGCCTTGTTATCCTAAGACCACCTACTGGTGAGCACCTCCAATCTGTCTACACAGTCTGTTTCT-TGTGACTCTGTTTTGTCCTTGTGACTCTGAGGTCTAGAAGGATACTTACAGATCATCTAACACCACCTTCTCATTTTGCAAAAGGGCAATAAGCTGACATTCTCAAAGCCACAGGGCA--AGTTAATGACAAGCCAGCATCGTGCAAGTTCCTCTCATCATTCCCAGGACAGTGCTGTCTAGAAGCCTTCCGCACATATAACCCCTCCTGGGCTTAGAGTCTCAGTATTAATGCAGGTCACTGAA-----AAACAGGACACAATACCAGAGGTACATGGTTATCTTTGGATTTCTACCTCCTTCATAAAGGAGGCCAGGTCTTCAATTGTATAATAAGTAATAAATGCCCCTGAGAATATCAGTATCCAGGGTT---AGTG--------ACTGAGGT---------------------CTGTTTGTCTCCTGAGAACAAGATTCCAGAGGAAGAAAGGATGTGGAGACTATCAGGGC---ACTAAGAGAATGAAAACCAGTTACAATAAGCTCT--GTGGTCAGAAGGAAGGTACAAAAGGA-----GCAAGTG-GGCTCGG-CTGCCTGGCAGGTTTCCACGCAGACATTCAGCAAACAAG-----CAATTAAGCTTCTGTGTTTACCCTCCGCTT-CTGCCTGGTCTTCTCACAGTCtgacttagaattttaaaaatgaatgtgaaaTCTAGTACACGTTCAAGTTCCAGTCACTTTTCTTTTCCAGTGGAAATTTGCCTTAATAATTTGTAAGCAGAAGAAACAATAGAAGCAAAAGCAACACAATCCCTTCCTAAACCTACACTTGAAAGAATAC---------------------------ACTCCCCAGCTGAATCCTTAGAG-AGCCACTGCTTA---ACTTTCTCCGTGGGCTCCTACAAGCCGGGAGAGGCTTCCCTTCTCGGTTTTCAGGGAAGAATAACTTCACCAGAAGTGAACCTGGGAGCCCAGGCTCCACCTGAGGCCCTCCCTGGCAGGCAGGCGGTGC------------------------------AATGAC------------AGGAACCACA---------------------GAAGACACTGGCAAA------------------------GGGAAGATGAAACTTG-CCATGTCTCC------------------------TTGGATGAGA-----ACATTCCAGAAAAGTGCACAGGCAGCTCTAG--ACAAGGAGCTCCTTTGACCAATAATGCCAGAGCACTCAGCAACAAGTGACAAACGTCCAGCCCTT---------------GGGTTTTATACTCTTCTCACCTCAGCTCAGTGGACAGAAGACTTTGGTTTTGGGTATGAAAATACAATACCACTGGAGTTCAGGAATTCTGTAGTTGATC---ACTGCAGGGAGTTAACAGTGGA------------AAAGCAACTAGgtggaaaatcagcaaagaaaagaaaaaggtatccACACTGTGTAATCAGCCAACTCCTATTTATGTGGATGGAAACCCACCTGTCAAATAAGCGATG-TAAACCACAATAGCAATGTGAGGCTGAGGTACCCAAGTTTCCTCCCTGTGTTCCCAGGCTCCAAGCTGT-----------ACACAAAGACTGTACCAGATCTGTCAGAGAAGCTATAAATCATCTAATTAAACATCATGAAAAGAGACTCATAGTGTGGCAGCTTTCTGATGAGCTATCACATTGCTGTGAAAGAGGAACCCCA-AGGGAAAACGTTT-GATTTTAGATGcggaatttttcattttctacgGACGCATAAACACACA-GCACATAAAca-------------tatatagacacacacacaaacatacgcACAT

a score=22931
s chr3           153697964 940 + 160039680 AAAATACATATAAAGTAAGTAAACAGGTTCACCGAGCAAAGGGCCCGGTGGCCAATGAAGAGACTGAAGCTACGC------------------GCACACAGTGTTTTCACATCAATATTCCAAGTCAAGTCATCAGAAAGGCCTTCAGGAGCTAATTTCTAACCTCCCAAAGCAGCGAGACAAACGCAACAAGCTGCGGAGAAGGTGCGAAGCCGAAA---CCTGAAGCCAGAGCATTTTCTTTTCCCTGT---GAGGTTTGCCAGATTCATAAG--AACTACTTTCAGCAGGAAGATCATGGTTCAGCTCTA-CCTCCCTCCCGGAAGACAGAAAATGAGTTGCC-CTCAGCAGACATTAACAACTCTATCCGCTTCCCTCCA-GAGAAAACTGTTGCCTTCCTTCCATTGTCTCTG-CAAGTTGGTAGCCTCAGGCATGAGTCAGGAAAAAGGGACATCCCACTGT-CCGCCAGCCTAGGTGATGGTTACCTAGAGAAACAAGCCCTCCATCAGCAGCCCCAGCAACTCCCATCTGGCC---CTGACTCTATGGACTG-TTGGGCATCACTACCGCAGGAGAGTAGGTGAAACGTCAGACAACTCA------ACCAAGGCCAGCCATGGTTTGATTGTGTCAGAGTGTCACCAGGGCAAATCTCAGGGTGCTGTGGCAAAGGC-TAATACATTTACAATACGCTCAATTTCATTCAGCCTGGAGGAGAATGAAAGATTGGAAGCAAGGGTGGGTGGAGAGGAAAACACTGAGAGGAGAGACCAAATACATTC---AGC---CTGCTTCTCCTCCACTCAACCCTGGAGGACCAGTGCCTTCCCATCTGGCACAGGAGGAAGCAGCCAGTAAGCATCTGCCACAGGGCACGTGC----TCGAGAGGGGGTCTGTCAGTCTTCATCACACAATAGTGCTTGCTAGGAGACAGCTTTGTCTTCACTTCCCAAGTGGAACCTGAGGTTTAGCAA
s HiC_scaffold_1 140528450 942 + 233722169 aaaacatttaaaaaaaaaaaaaaaagcttcagggAATGAAGGACCCAATAGCCAATTAC-ATACAAAAGCTACAGCATTGACTATATTAGCCGACAAGCAAGTTTTACACATTAATATTCcaagtca--ttaaagaaatggCCTTTGGAGACTATTTTCTAATCCTCCAAAGcagtaaaataaatgtaataagctGCCGAAAAGACAGGAAGCCTAACAATCCTGGAGCCaggacatttttttccttctcttcgaAGGCTTGCCAGATTCATAAACTGAGTATTTTCAGCTAGAAGTTCATGTTTAAGCTTTATCCACCCtctctaaaaacagaaaattagctgccattcaaaagaaattaacacCTGCATCTACTTCATTTCAAGAGAAAattgtttctttccctc-----tccctggtAACTTGATGCACTTCTGCATGCGTCAGGCAGAGGTGACAGCCC-CTGTGCCACCAGGCTAGGTAAACGTTGCCTAGGTAACCAAGCCCTCCACCCGAGGCGCCAGCTCCTCCAAGCTGTCTGGGTTGGTTCACCGGGCAGAGTTGGCACCACTCCTGCATGTGAATGGGTGA---GTTTAAAAACCCGCCACCCACTCTGGCTGTTCATGTTGTGATTATGTCAAAGTGGTAGCAGGGCATGTCTGAGGGTCTCATGGCAAAGGCGGGGCAGGAATAGGAGACCTCCGATTTGGTTCCGCCTTGAGGGTA--GACAGACTGGAGGTTGGGG-GAGTGTAGAGGAGA--------AGGAAAATTCATAAAGCTTCTAAAGCTTTCTGCCACTCTTGCATTCAA--------GATTAACTCCTTTCTCTT-----CCAAAGTAAAAATTCACTGGACACTTGTTATGTGCCAAGCGCTTTATTTAGAGcgtctcatttaatctt-----cacatttGTCCTTACCAGCAGGTAGCTCTGGCTTTATTT--TAAGTGG-------GGTTCAGAAA

a score=7506
s chr3           153701921 373 + 160039680 GAAACCCTCTTCCGTCTCTCTGTATCCCACTTTACAACAAACCATGAAAAGCTAAGAGGCAGTTCCTCATAAAACTGTCCATAAAGCTGTGTGTGGTAATTAAGCCCCACAGTCCTCAG-CACACACGGCGCTCAGTGGCACTGGCTTGGGGACTCACTTTTCTTT-------ACAGCTTTTGGGGCTCATTTTCTCCCCGCTTTCTGCCACTAAA---GTACAAAACAAATCCCCTACAACACTTCCACTGTATTTCCATCTATTGCCAAGCTGCTGTCATTGACCACA-GCCATCGTCTC-CAGTCGTCAGTTCTTCACTTTTGCCACCTTACAGAGGTGACTGAGA-----CACGTGTGTGTTGGCCCAAGGAAGCTCAGATTCTAAG
s HiC_scaffold_1 140531571 350 + 233722169 GAAACCCTCTTCTATCTTTCTGTAATTCTTTTTACTGCAATTCATGAAAGGCTGAAGACCAGCTTCTCATAAAACAGTCCATAAAGCTGCCCGTGGTAATTG------TCACTCCTCTGCCGCACACAGCCCC----------------AGAGCCTGCATTCCTTTCCCATGCACAGC----aggttcctttctcttttc---ttctcccattGAAGTTGTGCAAAATAAATAGGTTACAGTGTTTCCACATTATTCCCATCCA------------CACCAGAAAGTATATGCAATTGTTGCTCAATCTTCAAATGTTGACATCTGTCCCCTTACAAACCTAATTGGGAAACTCCATGTATCTGTCGAGCAatcaaagtacaaaaacaaag

a score=6018
s chr3           153703234 230 + 160039680 CCAGGTTTGAGACCCAACACCAAGATGGAAACACAATCAGGCATCCAGTGCAGCAGAAATATGTGAGCTTTGGCCATTAATTTTTAAAAGTCACGCCATGAAACTTAATAACTATACATTAATATACAATTACAAAACCACTCTTCGCTTTGCCAAGGGATCGAATACACAATCTTCTAGGTAACAAATTCTCTCACTCAATTCTGAGTGACTTTATAAAAGACTAGTGC
s HiC_scaffold_1 140532434 214 + 233722169 ctaggttcaatccccagccctagaaaacAGAAAGGATCAAGT-----TTATATCAAAAA-GTATCAGCACTGCCTATTATGTTTTGGAAGTGAAGCTATAAAAC--AGAAGTAAGACATTAATATTTAATTACATAATT--------CTTTACCAAAAGATTAAGCCTATGATTCTTTAAGGAACAAACATCCTTATTCAGCTCTGAGTGACTTTATAAAAGGATGgcgc

a score=6862
s chr3           153708911 120 + 160039680 CTGCCCCTAGAAGTGTGGCAGGCTTGGCTGCTGTGTCACATGGATGTCAGTAG----------------AGGCTATGTCTATGCTCAGTGTTCTGACCTATGGACATCAGAAGGATTAGAAGCCTAACTCTCCTGG
s HiC_scaffold_1 194511548 136 + 233722169 CTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCCAG

a score=9648
s chr3           153711680 800 + 160039680 GGATTCAGACCCTAGCTCCTATTTTACTGGTAAAACT----GCCTTAGCAGAGCTGACCTCTCCTAGCCTCAATGTCTCCATCCACATGGGATTC-ACCACTGTGCCTACCTTATG--TTTCTACAGAA-------------GCACAAATATTGAAGCCCAACAC----CATGCAA--------------GCAGACAGTGGGTGTGCCA-----AGGGAAA-------TAACTTCCCCCAGACAGCATGCTctctcatgctctctcgtctcctacttctctgctcttctctcctctcatcCATG----TGGAAAAAAGTCATGCGTGTATCCTTTTA-ATATCACGTATGTGTGTATT-AGAGCACACGTGGAATAAAATACTGTGAA---TCTCAACTGTCAGCTCTTGATAGAGAAACCTAAAGGGGTGACCTTTGCATGCTATTTCCTTCTTAAATTAACCTTTTTCAGGTTAGCATACAAAGTAAAGGCTGTTTCTTTTAATAACAGTTTTGATGCCCTTGGTCAAAAATGGAAGAGAAAAAGAGCAAACCGCAAGTCCACCAAAATGCCAGGCATCACACGTAGAAATCTTAGATCAGATCAGGCCAACAGCCAGGCTGCTGCGGAGGTTAACCAGCCTGGTGGAATTGAACAGGCATCAAACCAGCCAAAGAAC-CACAGGGAAGCCACAGGAACCACAGGAACGGAGAGAGGTGGTCCTCAGCACT--GGTGAGAGAGCAGAAGGGAAA---------------GAGGTCTGGTGGTGATGCCTCAGG-ACCACCCACCTCAGGGGAG------------------------------------AACAGGGCTGAGAAGGGCAGC-------AAGCAA-----------AGCCAAGTCAGCCTCCTA--CAGGGAACAGCTGTGAGA
s HiC_scaffold_1 140536380 879 + 233722169 GGATTCAAATCCCAGCCCCTCTTTTACTAGTAGTACCTACAACCTTGGGGAAGCTAACCTCTCTAACTCTCATTTACTC-ATTGGTATGGAAATCTATAAGAGCATCCACCTTAAGAGCTTGTAAAGATTAGGTGAAACAATACACAGATATAAAGTCCCAATGGGGGGTATGTGAAAGCAAAGTGTTCGGCAAACATTGCCCGCATTATTACTAGGCACACAGACCCTAAATTCCCCCAGGAAGGA------ATCA-GATCTTCTATCTCCATGGTCTCTGCTC----CACCTCTCACCCACAGCACTGGACAAA-------TAAATTTCCTTTAACGCATCAC-----TATTCACTGAAAATAAATAGGGACCAAAGGGCCGCAGACTTTTTTAACCTACATATCT------GGAAGCCTATTACAGTGGAGTTCGGTTGTT------CTACAACAGAAACCT-----ACAGTGGTGTACAGTTTGGGTACCATTTCTTTTCATAA-GGTTTTAATAGCCTGGATCAaagattaacaagaaaaaaaacaaatcttatgTT-ACCAGTAACTAAGAAATCACA----GAATTCTTGGCTCCAATCAAGCCATCAACTAGGCTAC---AGAGGTTAAGCAGCATGGCAGAGTTGAACGGACATCAAACCAGCCAAGGAACAAATAATGAAGCCACATAAACCATGG----AGAGTGAGACATTTCTCTACTCCCAGCTGGAAGAgtaggaggaaaaataaataaagcagctACAATAAGGTGACCGTGGTTCAGGTACTTAGTGCCTCTAGGGAGTGAATTTCCTcccagaaacagagacaaaggaaGTATGGCAGGGTTGAGAAGGTTagcaataaaaaagcaaacacaagTAGCAGTAAAGTCAGCCTCCTGGCCATGGCACAGC-GTGAGA

a score=41966
s chr3           153713764 2698 + 160039680 ggagcttgtgggggacttttgggatagcattggaaatgtaaatg-aaataaatacccaatttaaaaaaagaaagaaaaTAAAATGAGCCATGAAACAGGTTAGCTGTGTCTTGCTCTACACGAGAGGAAGTCTGAGAGGCCAG--CCCAGAGGCTC---CCAGAGCTTTCTGTCACTTATTAAAATATCAAATGAGGCTGTGAATGACCGACTTGGAAAGTTCAAAGCTATCATCTTCCGCCAGCCTTCACCTTTTCCTATTCTTAATCCCTTAGGTTTTCATCTTTTTAAATATGAGGCCGACTAGGTCC-TAATTCCGACAGCAAACTCCAGCAGGACAGTGTTAACTTTTATACCCAGAGCTAGTAT-----------------------CCCTCACTACA---------------------GAGTCATGATGGCACAGGACAAGGAGG----------TTGACGTACACCTCAC-TGAATCAAACCCCATGGCTTAGAGTCACCATAGACTGGTTTCCCTGAAAAGGATGAGAAAGGGCACTAAAGAAGGGTGGTGGATTTC-----CAGCCCCTCG-TGCGGGACACAAGAGCATACACAGGCTTTTCAACAGCCATGTGGCCTGTGCGTCCCAGCAGTAGAGA--TGTAGAGATCTCAGCAGGAGGGAAACCACACAAGGCCATGGCACTTGGTCCTGGCCAAGGCATTTAGAA-CAAGTTGTACTTAAATTACGAAAGAGACATGAATTACAATGTC----CTTCTGAGGATTTGTGGGTTCGAATCTCCGCCCTGCAGCCATTCTACATTAGCAGCTCCTTCTCGAGCTGGATGT-----GGTAAGACTTCCCAAAGCACAGCCCAGAGA--------GGGCACCACTGAACTCCACAGGACTCACCAGAGATGAACAACAGCagaactccaagtgctcaggctctaccacacacggacagaaagaatgagaaattctggggtgg--tcctggccacttttagtgtcctaagccctttgtggagttctgCT--AGTTCCACTGGAAAGCACTGTGGTCTATTGACCTCAGGTCCTGTGC------TTCGGCTGTGACTTCCAGCCCCATAGATGAGACT------GAGGAGTTACTC--CCTTGCTAAGCTTCAGTCCCCCTCCCT------TTGCAGTGCTTGGCTCTCTTGCAGTAAATGTGGACAGCAT---TTACCTTG-----------CAAGGGCTGATCGGATGAAG-GAGAACCACAAAGCCCATGGCTTGATTCACAGTGCTAACAGAAGTGGAGGCAACTCAGAACAgagctggcacagtctatctgtaatcagatccacagcatccttggtgttgtggatgataccatccc-atctc----tgctcacctctgccactgaccagcagtggacgggacagagagacacgaagcagatgggacagagaaaatgtagcaatgttctaatacagctagtttaagacacc--aaatgggaatatcacataatttttggtgtcatgaagccttattggcctttg-attttttgtaagctattaa--tgcagaagtcattctt------------------TGGGGACCTGAAGTCCTACGTGCCCTGGCCTAGCAGTCTTCCTTTAGTTCATTCACATTAAGCTCTGTGAACCAGAGTCTCCCATCTGCGCCATGAAAGCAAATGCCACCCACTCTGACAGTTTTCTGT-AAGATAAACATCTGGAAGGATCTGAAAGATTGCCTGGCACAGACACTAGATAAGATTCAGCAATTGGCACATACTGTCCCTGCTACGTGGTCACTCTTGAAAAACTGTGAGCATTCTCTGACATGAGAGAAGAAGCCGACGCGGGACAAGGTGACGCCGCGAAGGTGGACATAAAGCAG-----------CCACAAGCACATGAACATGTTCTGCA-CACCACAGTACACGGATCTCTGAGATAGA-GCTGAATGTACGTGCACACA---------------------AACACACAAAGGAACTCCGA----------------------AAAAAGGCAGGGTTTATCCTGTATATCCAAATTGTTCCTTTATGTGCAACAGCCTCCTGGAGCAGTGAAACAAATCAA------GAGCGTAAATCCTGCCTCTGACCTTAAAGCCCTCAGGAACTCACACCACCATACTGAGACCAAACAGCAAACTTGCACATCCCACAGAGCAGCAGACCCTGGGGAGAATTCACAGCTGCACAACATCTGGGAAGGATTTGGATCAGTTCCTGCAGAAAC--------------TCAGATGAGATTTCAAGGGCCGCTCAAAGGTTTCCAAGTGTCCCCGGGTCAGGCACTCATGACCTGCTTATATCCCGCCTTCTTTTCCTTTCTAAGAATCTGACCAGCATACGTACCTCCGCCTTG-GTTCCGATCTGAGGGTGTGAGTCCCTTACACAACTCTCATTGTCTGAGCCCTGCAGCCTCTCT-GCTGACGAGGAGGACTG--------------TGTTGACCACAGGAATGGTCAGTAAACAGGTGTGGCTGTTGGGCACTGAACCCTGGCGAGTACAACTAAGAAACTGCACTGTTC-GCTCCATTTCATTTTAATCAATTCATAATC----AAAAGCAAGGGGCTCCAGCCAGCTATTGGAAAGC--------------------------AGATGAAATCTACTT-----CTTTAAACCA-------Ttaaatacaggtcaaaaatatctaagaaaaatttagccactgaattgaggcatactgtaattgaaaaatatactctgaattt------tgaatatgcaaaagcgtcataacatttcattaataattacatactggtcatatactaaaatgaagttggttttgatagttttggttaaataaaatatactacataaattctacatgtgtcttttttttttaatttttag
s HiC_scaffold_1 140537458 2815 + 233722169 GGGGCGTGGGGGTCAC-----AGATAAAAGTGGAAAAGTCAGCACAAAGAGACACATAATCAGAGAAAGGCACAGGAGTAAAGCGC-CTACAGAACTGCAGAAGTCTATTTCCTTCttcaca----gaaatttaaaagaagagattCAATAGGCACTTGCCAATGCGATTTGTTACTTATTAAAATCCCAAACGAGGCTATGAATCatcaacatgaaaaaaaaaaaactatcatctTTCACTAGTCTTTGC-TCCCCCCAATCCTAATCC-TTagataatga-ctttttaaatatgAGACTGACTCAGCCAATAATTAACACTGTGAATTCTAGCACTTGGGCATTAACTTTCATGACCAAAACCAGCACAAAAGCTCATACAAAAGTAGATACCTGTACCCCAACTTTTCTGTGTTATCTAGATGAGAAATTTGGGGACAGGAGACAGAGTGAGAAAAGATTTGACATGCAGTCAACAGGAACCAAATTCATTTGCTTAGAATCATGATAAACTGGTTTTCCAGAAATGCATGAGTGATGCCACCAGCAAGGGGTTA---ATTTCTGTCCCTGCCCCTTGCTGCTAGGCACAAG------------CTGCTCAGCATGCATGAATCTCAAGCCCCATAGCATCAGAAAGCTTTAAAGAGAACAA-GGGAGGCAGACATCAAATGATTACAATACCTAA--------AATGTAGGCAGAAATGTACTGGACTTAACTTTCTAAGCTGACCTAAATTTCTA-GTCACTGCTTTGAAGGATACATGGGTTTGAATCTCTGCCCTGTGGCTTCCATAACTCAATGACTCTTTCTTTAACTGGACATAACAGGTTAGGGCTACCCAAAGCGCAGCCCACAGACTGGCATGGGGCATCATTTGA-------GGGCTGGTTAGTGAAG----------------CAAATTCTTGGACCCTGCCCCA--------GAGAGAATCATTAACTCTAGGAGGGCATCCTAGCAATCCCTATCCTCATAAGCCCTTC-TGGGTTCCTACTGCAGTTCAAGGCAACGGCCCTGTGGTCAGT--ACCTC---TCCTAAGCACAGACGTTGGGTCTGAATTCCAGCCC-ACAG-TGGGACTTGGGTGGGGGGATTACTTGTCGTCTCTGAACCTCAGTCTCTTCTTCCACATGGTTGCTTCATTCAGCtct------gaaaatatcaaaaatatccCTGACATTGACAGCAGAAAGCTAATGCTAGCCACACAAGCCAAGACCTACACTGCCTGTGCCCTGGTTCTCATGGTCTACAGCAA---GACCAGTCCAGCATAGGCTTGGCAAACTTCATCTGTAAAGAGATACACAGTATCTCTGGCTTCACCGGCCACAAGGTCCCCATCTCAACGTCCCAACTCTTGCCACTG---------TGACATGAAACACAGGCACCA-------GGAAATGAACACAGTTAGCTATGTTCCAATAAAAAT-GTCTACAAACCTGGAAATTTGAATTCCATATCACTTTCCAT-TCATAAAGCcttatttttctttggattttttttaacccTTTAAAATGCAAAAGCCATTCTTATTCACAGTTCTGTCCAGGGAGAGTGTGTAG-CTTGCTTATCCTGGTCAAATACTCTCCCATTAGTAAAGTTATA--AAGCCAGATAAGC---AGTTTCCCAATTGGTCAGATGAAATGAGTACTGCCCAGCCTGTAGGTTTGCTGTGAAAATGAGCATCTG----------------TACTTGGTA--GGCACCtatgatcattataaaaatgaaatat------------------ttgctgATGAAACACC---AGCACTCCATGACGTAAGAAAAGTGGTTGGAGtacaacaaaac-agaatgcaAAAGTGTAGGGAAAACAGAGCTGTTCGTTTCCCAACCG-----ATTTGCTCTACAGAATCATCAGACATGCATCTGTTTGCTTGTTGCTCTATTTACATACACAAATAAGCagtgaaaaataagcaaaacacacaaagGAACTTCAATCACCTTACTCTCTGGACtgaaaagaagacacagttaattCTGAACGACTAAATTGTTCCCATATGTGCACTATTCTCCCGGagcaaagaaacaactcaaataaaaGTGTGTAAAGTCTGCCTCTGACTTCAAAGCCTCCAGGAGTTCACACTACCACACGGAGACCAAAGAGCCAACTCACACATCCCACAAGGCAGCAGTCCCTTGGGAGAATTCACAGCTGCACAACATCTGGGGGAAATTGGGATCAGGATATGGAGAAACCTAGGACCTCATTTTCAGATGAGAATTCCAAAGATTATCAAAGTTTCAAATAGGTCCCTAGTTCAGGCACTTAATACTGGTTCATTGTGTATCTTCCTGTGTTTATCAAGAGTTGAAGTAACCTGCATGATCTCTCCTTGTGATCCGACCTGGAG--ATCAATTTTTT------CTCTTCATCTCTGAGCCTGGAAGTTTCTCCAGGTGGTGAGATGGATCAATGAATGAACATGCTGTGGAACA---GAGTAGCCACCAACCATATGTGGC-ACTAAGCACAGACACCAGTGTGGTATCACTAAGGGaccacattttttaatttaatttcattttggttaatttatattttttaaaaaacctgataCTCCACTCAGTGATGGAAAAACGTTTAAAGGCATGAAGCCCCTTGCATATGTGAAGTtaccttttttactttaaattagtAAAGTCTAAATACAGAGCCAGTGTTTCTGACAACAACGTGACATCTGAATTGAA----AGCTTAACTGTCACATATACACTGGATTTGAGAACTGCCTATGAAAAGGc-------tatttcattaataattttatgctgattaaatattaaaatgaagat-aCTGAGCCTATACTGGgtgaagaaaatgtgttat-ttaattcTACACATTTTCTTCTTATGTGGCTCCCAG

a score=15936
s chr3           153728543 535 + 160039680 ccCAAATGTTAAGTTTTTAATCAGCATTCATAAGTTATTACCAAGTATAGCAATGAGTAGTGGTTCACTTA-------CTAAAGTCAAAAGCAAGAAATGCTAGGATAAACCTAGACCAGAATTTT-ATAAACTAGGATTAACAACTGCTGCTTTGGAAGGACTACAT------------AGAAAAGCTTTTGGTTAGAAATAAAGACAGGTTCTGAATCTGCCAGGGATTGGAGGTACAGCCAGATTTGTAGGAGGTGGGTAGGAAGAAAAATGTAGCTAGGATA-TTTTTGTTTTAAACTGGGCCAAACACCAAGAAAAGCTTAGGCTAGTCTATAGGTATAATCTGATTCTCCAACTTCTTAAATTATGTAATTT--ATCCAAGAGCACCTGTTTCCAAAATTATTAATAAAACAACAACAACAAAAAAA----AACCTGTGGTCAGATGCTCTACCTCATTTGACCCTCCAGCACC---------------------------------ATGGAGACAGGGCATTGAACTTAG--------AGATCAGCCATCTTACATCTCACAGTCAACTGGCCAGTGTGTGGGGAACTCACCCTCT
s HiC_scaffold_1 140550000 571 + 233722169 CTCAAATGTTATGTTTCTTGTTAACACCCACAAGTCATGCCCCAGTATACCAAGGAATAGAGGCATATTTATATCAATCTAAAAACAAACTCAATAAATTCTAGGATAAATCTGAACagaaatttttgcaaaataatattaattgtTGC------AGAGGgactgcaccaaaaaaaaaaaaaaaaactttttggatAGAAATAAAAGTAGGTTCTGAATACACCAGGAAATGAAACTACAGCCAGATTTGTGGGAGGTAAGAGGGCAGGAGCATGTGGCcaggatattttttgttttaaaacatgcaGAACTACAGAAATAACTTGGTCTAGCCCATAAGTGTGTCATAATTTTCCAAC-TCTcaaataatgtaatttaaaaccaAAAGATTTCGCTTGCAAA-----------------AATAACAGAATGGGTGCACCTTGCAATTAGATGCAATATCTCATGTGATTCTCTAGTACCTGTGATGGCCCATATCATCCCTGGTTCGTAAGAGAGGAAACAGGGATTCAAACCCAGAAACTTGCAGGTCTGCCATCTTA--------ACCCAGTTAGCCAATATGTCAGGGATCCAGTCTCT

a score=46326
s chr3           153730413 1976 + 160039680 CTCCAAGGGGCCAACTGCCCTTTGGGATGAGAGCCTAGAGTCACTAGTACCTTC--TTGACTTCTGTTGTTCCATCTTCAAGCTCAACCTGGCCTGTCACCACGGAGATATCAGCATGCCTTGGGACT-------CATGAGGTATCAGAAGTCTTGAGCTAAATTTTGCCATTTAAATTCATTTTGTTTCATTATAAACATGTCCATTACCAAGTAGTAGTTCTCA-GAGTTATAACATACAGTTCCCTGATAGAA------TTAAAAGGCAGACTCTCTTCACTTTTCCAATTTCACCCTGCACACACattaatttaatatatttatt-ttCAGTAGAGTCATTTATTAAGGTTTTAATTGG-TCTCAAACTTTCCCATGTAAAGATGCTAAATGAATTCCAAATATAATGAAAGTCTCCTTGTcttccctcccctcccctcccctcccctcccctcccctccccttcccttcccttcccttcccttccATAAGTCACACTTCCATCAGGG-CGGACTG-AAGATCCTTTAGGAGGTGTTATGAGAAAATCATTCTTTTCTATTCCAGGTCAACATAG-------------------------AAACCATCTCACCCTTAC-----------------CTTTCCACATCCGAAAGCAGGTGCTTCCTCTATGTCTATAGTCAGACGTGTGGTTATGTGTGCACATGTGCCCGAGGAC--ATGTGGCTGAAC--CTTTAAGCCACCTGTTCA-TGGTAATATACTGGTAtttatttttatttcatacatataacatgtcatgcttgcat---gtgtgcatgtacaccctgtgtgtgcagtgcccaccgaggtcagaaaaggttccctaaagctgcaatt-acaggtggttttgagccaccatgtgggtacttggaactaaattcaagtc---ctctgtatgagctgcgagtgc---tcttaacttctg-agccatttctccggcccTGCTCAACAAACGGTCTCATCTCTTCTCAAAT---------------GACAA-------------AAATCAAAAAATATTTTCACATGAACTAATTAGGGAGAACAGAAATCTGTTTCGTATTAAAAGATAAAATTCTAAAATGAATACTCTTTACCGAATTTTCATTACGTAGAAGAAAGAATGCAGCTTTTATCCAGATCTGGTTTTCTTGAGGAATTCCTCCCTAGGATTCTCTTTTAAATATAATCAATTCAAAGTCAATATGGCCGGCGGCCCTGGCCTGTCGTTTACATTTGGTTTGTGTTGGATTTCTCCAGAGC----------TCCATAATTACCCAAGTCTGTTACTTTCTCCCCGAGTTTCCCAGCGATGATTT--CTTTTGCTGTGAGATGCTCTCAGTGT--GTTTCACTGC-----TCTTAGATTTCCCCTCTTGGGAACAT--GCTCCCTGCAGCGTGCTTCCCTGAAAATACTATGGGGAAAATTTAATATTTAAAATGCATTCATGGTGGGTCTGAAGAAGCCACCTACGG--------GCAAGGGTC-TCACTGCT--AAGCTAAACCTGCACTT----TGAGTCTTGATGGAACCATTCTTATTTTTCTGAAGTGGCTTGGTATCGCAAGACCTCTGGAAAGGGCAAAGATTTCTGGTGATTCTTCATGTCTG---------------GGGATTCACCTTCAAAGGTCAGATTTTGTGTATGGTTCCGTGCTATTCTAGGAAAGGTACAGGAGCAACAC-CAATCCAAAGAAGGAAGGGCCAGGGAGG--------------CGCTCAGAGGAGCCCACGGA-GTGAGCTGTGTTACTGTAAGTCAGTTCCTGTCCTCCA-----AACCTTCAGTGGC-TTCCTTCATGTCCCAAGCATGGCACACTGGCATGCCTGCCACATTCCTTTCCACCACTCTT-CCCATTATTCTCTTACATc---ggggattggcaagccttcccaggaaagagccagacagtaaatattaggctttgcaagccatttggtctctgtcacaactcctcgctcggctctgccattgctacaggaaagcagtggaagacataaacaaatggctgatggctgtgtgccaaccaaactaaatttaagcacgctgaagtgtccatcccata
s HiC_scaffold_1 140551571 2037 + 233722169 CTCCATGGTGCCA-----TCCTTGGGGACAGGTCCTGTCAGCACAGCTGCCTCCCGTGGGCTTCAGTTGGCCCATCTTCCC-TTCCTGCAGGTCTTCCTCCATG-AGACCTCACTCTGCCTTCCAGCTGACACATCATGGGATAT------------ACAGCATTTTGCTCCTTAATGCATTTTTGCTTCATTGTAAACAATCATATTACCAAACAGT---TCTCAAGAACTGTAACATAGATTTCCCTGGtagaaacagaattaaaatgcAGGCTCCCATAACTTTTCCAATTTCATCCTGCACAcatattaatttaatatattcAATATTCAACACAGTCATTTATTAAGGCTTTAATTGGATCTCAATTTCTCCCATCTAAAGATGCTAAATGAATTCCAGAGACCATAAAACTCTTTTTG-------------------------------------------------------CCATTCACTACATAAATTACACTTCCATAGGAGACTGACTGGAAGATCCATTAGAAAATGTTATGGGAAAGTCATTGCTTCACGTTCTGAGCCAGAataggaaatgattttttttttcttgctggaaACCATTACATTGTCACAATTTTGACTTAGGAACTTCTCCATATCCTAAAGCAGGTAT---CTGTCTGTCCACATCGACATATGTATCTGTGTCTTCATCCGTGCCCAAGCACTGCTGTGGCTGTACTCCTTTAAG-----TGTACACTCATACCACAATGATGTCGGTGGCT--CTGAAGAGTAGATCATTCCAAAGTATCATCCAGTCTGCATTCCCAAGACTTGAGCTTACTGCAATTTCAAATCTTTACAGAATTCTGCA--CCACAATTCACCATTACCCCTGACTCTACTGATACTTATCTGGGACAAACTCCAAGGCAAGTTATGCATGatttaaaattgcatattttaaatattatatctaTTTCCC-------ACTCAGTAA-CAATCTCCCTTCTT-TCAGATCTACCCTTCTTTTTGGAAAATCCATCTTTGCccaaataaaaaacttttttcaaatgaatcaataaaaaatGACA--AGTATGTCTTccattaaagggaaaaaatttataaTTACCATTCTTTACCTAATTTTCATTATGCA----AAACAGCGTAGCTTTTAACCAGACttgtttttcttaaagaattcCTCCCAAGG--TTCTTTTTAAACTTAATCAATTGGAAGTAAATATGGCTGGAAGCACTGGTGTGTAGCTTGAATTTGGTTTGTATTGGATTTCTCCAAGGCTATTGAAGGTTCCATGATTAATTGAGTCTGATTTTTCTTAACCATCTTTTccagagtttattttctttttaatatgaagTTCTTTCCATGTGAGTTTCTCTACCTTTGTCTTAGATTTCCCCGCTTAGTGAGGTCGACACCCTCTTACGTCCTCCCTTGAAAATATTAGAGGGGAAATGTGGAATTTGAGATATACCCATGTTGGATCTGATGCGAAAACTCACAGGAGGAGATGCGGGGGTCAGCAGTTCCCAAAGTT---CATTCATTTGgcctgagtcttttt----ttttttttttttttcacagatggTCTGG-ACCTCAGACTCTCTGGAAAGAACTAAGATTTGGGGTAATTCTTCATGTCAGTTCCAACACCTTCCAGAGAATGTTCTCCAACCCTGAGGTCTTATATCTG--TCTGAACCGCTCCAAGAGAAGTCAGAGAATAACATGCAATCCAAAGAAGAAGGGGCCAAGGCGGAGTTACTTGATACACTCCCTAAGAAGCCCCCAAACATGAGGGATGTGATTGTAAACTGGCTTCC-TCCTCCATTCTGAACTGCCAGGGACTTTTCTTTATCTACAAAGCTTGGTGTATTGCTAGACCTATCA-AGTCCTTTCTTTGGCTATTGCCTATTTTTCCCTCACAACAAGAGGGGTTGGCAAAGTTTTTCAGTCAAGAGTTAGATAGTAAACATTAGGCTTTGTGAGCCATTTGGTTTCTGTCACAGCTT----CTCAACTCTGCCATTACAGTCTGAAAGCTGccacagaaataaacaaatgggTAATGGCTGTGTGCCAATAAAACCTAATTTATGGACACTGAAATGTGTATTTCATA

a score=38823
s chr3           153734013 2694 + 160039680 TATCTGATCCTCATTCCAGTTTaaaaacaaaaacaaaaacaaaaCATGACTCTGTGACTTGAGCTGTGATCTCTTC---ATTCGCCTGCCCACAT-TTTATTTTCATTAAAGTAAAATGAATAGAATCTTGTGTATAAAATCTATTTT-GCCTGATAGATGAAGAGACCTAGAT-TTTCAAAAGCATTAAACATTTA-----CTGAACTTGCAGCTTTTACTGACACTTTTATAATTAAGAAATA---AGATGTTACACACTGAATAATAGCGTGTTCTCCTTCAGATCCATTCTCCCCTCCACGTGGCAAGCTCAGCACTATCTAGAACAAGCAT---AAGATCTAAACAGCATTAGACAAATGTCTGC-TTTATTCTTTTTCATCAGCTTACACTGTAAAATAGCTATCCACATCTGACTCCATTTGTGAATTGCAATAAAATTCTGCCGGTTGAAAGCAGGTG----------------ATAGACGGTAAAT-----TGCCTC----------TTTCCGTCTAAGCCAGTTTG----TCTGTATTTTTAAGGGAAACACATTCATTGATATGATCATTGGATGAAACCTCAAGTTA--TGAAAAAC------CCACATTTGCCTCCATATAGTGAA------AGGCTTAATATGTGTGCACTTTGGTTTGGTTTTTC--------------------------AGTGT----TTTTGATGTTAAT--------------------------ACTTCATTTTACCCATTCATTCTCT-TGTAAC---AATCTTTCCCTAAT--TCCACTTTAAATTTAACAAGAAAATTAAATGCCACGAGGGGATATTTTACCTTGAGAAAGTGCTCATTTGGTTCACGGATTTGTCTGAATAAAACGGAAACACTCGAAGTGACTGACAAGATTTACGAAGAGTGTGAAATTTT-------ATGGTAA------------------------AGCGGTCCTGGT---AGATGTGAATGCGACTCCGCCTAGC-----------------------------------------TCCCGCGACCATGTT--------------------------ACCACAGAGTAA-----------CATAAAAAGGGTGACTGTCC----TGGGTTATGCTGGGGGTGGGAGGGACTCTGAACCTAGGCGAGCCAAGCCTTCT-CAACAGGCAGCTGGC----------CTGCCTCTCCTGA---------------TGCCAAGGCTGGCAACTGTATCTTTTGTCCTTCAAAAGTTAACAGGCAGAAGCAATCT--ACCTCTGCTCACAGACACCTGGAAACATCAAACA-CAGCATGGCTCTGCCTCTTGTGGA--GCCACCCTCCTCACACAAAGCTAGAAACTGT-GATCAATATAACACTTAGTTCACATACTCAATAAACTCAGTCAAGTGGAAAATCACATAAAAGACATTCATGAGGGAGTGCTGGATGGATGTGAGCCGCCCCAAATAATTTGTCAATGAG-------TTCAAAAA---------TAATAAGCAATTTTAAACCATTTCCAAATTTAATATTTATTATTTCTCCTTCAGCCCTGGGCATTACATTCCAT-------TAAAATATGCTCCGTGCATTAAAAATGAAATGCTTAGCCATTAATTTT--AAATATCCTTTATTTTCCTT----CCATTTTCTTCTGTGTCCCAGCCC-CATCCTTGATGTCTTTCTCTTGGCCAGAGACTGTGTAACTTAGCACTAGGCG----GCTGCATACACAGTGGTGATTGT-CAACTAATAAACAGACT------ATTCTCTTTTCCACGTTCTGGGTGCTCATGGTTCCCCGATAGGTTTTTTTTTTTCTTCTATTGAGCTTCTCTTAGCATCCTCCTTGTGTTCTCAACA--TTCAAAAACTCAATCACCTTTCCCAGAAAGGGACCAGGGACAGTGAA---AGCATGGGGACCTCTTTCGCATCTCCAACTCATTCTATTCAAGGATACAGTGCTGACACAGACCCAC---TGCCACACAAATGTCCAGCCTTTCCTAATGAGCCCCCTGAATTGTACTTCGGTGTTAAACAAGATGGGACTGGCTGGGTCCATCTTGGAATAACGAAAATC-----TTATCGGGGGAGGAATTTTGTGGCTTCTTTAGAA---CACAGCCCCCGGGGCTCTGACCATGCCAGCATCCCCCTCTGCCT--AACCTGAAATTCCTCTTACTGCAAATTAAAGCCCTTCTGTTACACATGACTC-ATTCTCCACTCTCTCATCAGCCCCACATCCCACTTGAATGTGCCACCCTCTCTCAGCATGGCCCCTGTAAATCAGTGTACTGTGTTCCgtgtg---tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTGGCACTGAGT-TCTGATGTGAGCCACCCAATAACTACTCTCCA-TCCCCTTTGG-GGTGAGCATCTTCCTTCTCTCAGGCAGCTCTCATCTGCAGCCGTAGGGACAG--AGTGACTTCACTGAACGTGT-----GTGATGTGTTGTGGGGTCAGCTGAAGGGCAGTTTCTAGGAAGCAGGTCTATTCAAAAGACAAGCCAATGTTGGCATCGACTGGGGACAC---GCTAAA--ATGCATCTGAGAGGGAACTCCCACAGGATCCTCAGTGCCAGAGATGTCACCATGCGCCCGACCACTA----AATCACCTGCAGGCTGGTGTTCAT----------TCTAGTGCTG-TGGTATGAGCTAGGAATGGAGGGGAAATATGCGCTTTAGGGAAGGGTTTGTCTTGGATGACAGCCACGACACACTGTCTAGTGAGATGCCCCTGGACCCTTGCAAAGATTTCTTTCAGCTCTGTCCTTCAGAAAGATAAGCCCAGATACCCCCCTGTGTTCGAGATATT----CCAAACCCCAAGCTGACTGGACCAAT-------AATCTGTCTCTTAATATGAAATGCAAGTGGTGTGGCAGAATGGGGATGAGAACAACGCGCAGAAGAA
s HiC_scaffold_1 140556213 2923 + 233722169 tATTTGATATTCATTCTAGTT--------------------AAAAATGACTCCATAACTTGTGctatgatttttttccagtttgttccactccatctttatttttattcaaataaaa--------atctc----CAAAAATCTGTTTTTGTCTAATATTTTAAGA--TCTAGATGTTTAAAAAGCATCAAACATTTAAATAACCGAGTTAGCAA-TTTGACCAAC-TTTTCACaattaagaaatagtaagaagTTACATACTAAATAATGTCATGTTCT-----AGATTAATTTTCCCTTCCAAATGGTGAATTCAGCAATATTTAGAACAAGCACTGCATGatctgaatt---tcagaaaaatgtctatatcccttttcttttattatcttacATTTCAAAAGAGTTATTTACATCTGTCTCTATCCTTGTACTGTAATAACATTTTGCCATTTTAAGACAGGTGCAAAAGAACTAGGGATATAGCTGGGCAAGGGATGTACCTCAgacacacagtgcctgcctg-gcaagtgcgaggacCTGAATTT------GAGTCCCA---------AtaccaaataaagaaaacagtaagatagGTGAAAAATAGTAAACCATCTCTTTCCCCATACACTACACTCTGTATTTTCAGCACAGgtatgtttttaactctttcttcttttaaaccaTCCTTTGCCCCTCTGAAGTTTaaactttttatgtttattttttgtacctggaatcaaactcaggacttcatacttcccagacaggcgctgtgccactgagctatatccccagtcctcaagtttaaacttta---aaaacttaaGTCACATG-GTGGACGTTGCACGTTTAGAAAGT----ATTTGGCTCAA-----TATTTGAAGAAGATGCAAATAACCAAAGTAATACCTAAGATTCATGAAGGGCCAGAAAGTTTTTCTTCCATGCAAACTAAGAAATAACCTACACATTTTTAGGACTCCTATTTAAAGATATGA----GGCCCCTCCAGGCCAGAGACGTAAGACTATTTTTCTTATAGTTACAAGATTGTTTCTTGCCACAGTTTTTGCAGAGGCTATGAATCAGCATTTGTACCATGGCCCAAGGCCCAGAtctcacaaaaagaaagacaaccCACTATGCACTGTGTTTAAGATGAAA---ACCCTGAGCTTATGAAACTCAAGTCTTTTACATTGAGCAGTGGGCAAATCAGTCCCTGGCTCCTTAGGGAAATACCCTTTCTCTTCCAAGGCTGGTAGTTGTATAGGA-ATCTTTGATAATGTAG--GATAGACATATTCTGTACTCCTGTTCAT-GATGTAATGAAGCATTAGAGATCCACTGAGAACTGTCTCTTACTAATAGTAACATTCCTTGAACACTGACCATGACTTTAGATAGATATA-TACTCTGCACATACTCTTGATAACTTTAGACATCTGGAAAG-CATATAGAAGGCAGTTAGTCATGTTTACTGAGTACATACGAgttgtgtaaaataaatt-ttaataagcataatttttaaaagcagaaatagtaataaataagTCAAAAGAATATGCAAAGTCTACAATTATTATTTCTCCTCTAGCCCTAAGCATCATATTTCATATTCTGTTAAAACA--Ctgtatgctttaaaaa---attatttacccaCTGAGTCCCAAAACATCCTTTATTCTATCTTTAGCCATTTTCTTCTG---CCAAACACACACGCATACTATCTTTCTCTTGGCCTGAGATTACATAAAATATTACTAAAGGTTTTGCTATGGAGATGGTAGTAACTGAATTACTAATGAAT-GACTTAACTGATATGCTTTTAAACAATTAAGGTGCTCATATTTCCTAAACAGGCTCTTCCCTTCTTA--ATTACatgtctcctttc-ttttctttctttttgcaacaAATTCAACATTTTACTTCTCTGGTCCAAAAAGGAACCAGACTGAGTAAATGAAGTAGAGTGTTTTGTTTGTAAAatcactctatttttttttaacaatacaaAGCAGTCATGTAGCCCTAGATGCTACACAAAGCTAAAGCATGTCTTCAGTAGACCTCTGAATTAACTTTCTGTTTTTACCAAGAGGGTATTAACTCAATCTTCCTCGAAAAGAAGAGAATCCATCATATTTTAGCAAGCAATTTTACAAATTCTTTGAGAATCTTCAGCCCCAGTGATTCTAACCTTGCCAATATCCTCCTTTATATGAAACCTGAAATTTTTCTTGCAACAATTGACAGTTACTGTGGTGCGCATCGCTCTGATTTCCAGTCTCTGCCTCGCCCTGCATTCTGCTTGAATTCGTCACACTCCTGCTGCAGCGTGCATGTACATCTGTGCGCTTGGTGCCTTGGGCCCTGAG-------------------------------------ATGTGTGTATCTGGCGTTGAGCCTCTCATGAGAGACATAAAATAAACACTCTCCAGTCCCCTTCGGTGATAAACTTCCTCCT-CTTTCAAGGGTCTCTTGTCTGCGTC---AGGGAATGGCAGTGACATCACTGACCATGTAATGTGTGCTGTGCAGTGGGGTCAGCCGGAGGGTAACTTCCAGGAAGCACGCTTATTCAGGAGCCAAATCAATGTTGGCATTGAGCAGGG-CACTTAGCAAAATGATGCATTTGAGTTGGCATTTCCGTGGG--CACCGGTGCCAGAGACTTCAC---GCACCCACCGGCCATGCTCACAATTGGCAGGC-GGTGTTTTTTGGGGGCATCTCAAgtgtttcctttataggtcaggaac--agcaaaagaaagagaCTTAGCCAAGAGCTCATCTTGCATGAAAGCAAAGACGTGCTGTCAAATGAAATACTCCTGGAGTCTT-CAAAGCTTTCTTT-AGCGCTGCATTTTAGAATGGATGTCCCAGATACTaggatgtttattttattttaaggctaAAACCCAAGCTCACCATAGCAATTAGCAGCCATCCTTTTCTCTACCCAAAATTGGGGAGGGGT-GCACCATGGGAATAAGAACCAcatacaaaacaa

a score=9074
s chr3           153736906 502 + 160039680 CTCTCTAATCACGCTCCTG-AGTGTGCTGGGTTATCTCTGGCAGCGCACACTCAGTACATGCAAATTACCGCTTGTCTAACAAATGGGTGCTTAGCAGTTCTACAAAGTGCTCTGACAACCCAAGAATTAGTAACACAGTC-AACCAACTCGCACATCAGACCAACACGA-CATAAGTAAATTATACACTGGCTAGATGGCTGGTTGTGC--------------------------------------------------------TGTGTGTGTCTC---CTTATGTAGG-TCGAGGTTCTCTGTGAGTGGGAAGGAAG---------------------------CAGGGGCGTCCAGTGAAATGCGTGACACGCCATCAGAACGGA-TGAGCCCCGGGAAGGCCGTAAGCTA--GAAAACACTGTTGTGTATTAACATGCAA-----------------TTTTTGGGGGGGGGGGTTGTGTCCCTGTTCCGTTAACGCTTTTAGAACAGTACATTTTGCCTAATGGTTAGTGTAACATTGCAAATAATCCA---------AAAGATAAACAAACACAAAAGCCATTTTAAGTGTACAATTACCAAGGCTGCATCTCAA
s HiC_scaffold_1 140560561 593 + 233722169 CTCTCTGATCATCAGCCTGCAGTGCCGTAGGT---------CAGCAGGCAACCAGCAGCTGCAGATTACCCCATGCCTAACAAATGGGTATTTAGCAATTAAGTAAAGCACTGTGTCAACATGAGATTTAATGACATGGTCAAATCAAATAACATATGAAACAAACACAATTATAACTAAATTATATATTGGTTAGATCCTTaattgctctctctttctctctcactctctctctctgtttctctttctctctctctctctctgtatgtgtgtgtcttaTGTTTGTGTAGGACCTAGGCTTCCTGT-----GGGAAGaagttgtatcttttctttctttgactgCTTTAGAAAGGCCAAGTAGTATGTAAGGCATGTAATGAGGTCTGATTGTGACTTTTAAAGACCCTAAAACATTGGAAATACTATGGAGTGTTATTCTATAGATCAACTCAGCTGTTTCTTTTTG------------ATGTCCTTGATTT-TTGATGTGTTTAGAATAATACAAATTGCCCATTAGTTAATTCAGCATTGTATACaataaaatctcatttaaaaataaacaca-atgaaagGCATTTTAAATGCATAGTGACTTGGGCTGAATCTGAA

a score=35787
s chr3           153738226 4729 + 160039680 [encoded data, 5301 characters]
s HiC_scaffold_1 140561258 4714 + 233722169 [encoded data, 5301 characters]

a score=13677
s chr3           153750734 548 + 160039680 tctttaaaaaaataaaTAGAGCACCTAAATCTTGAGGGGAGATCTGCAAAAAAGCCATTTGTAAAAGTTATCACTTTCCACGGCCTT----CCTCGCCATCCTCGCCAGACCTGTGAGGCGTCCAGAACACTGGGAGAGTGGCTTCCAGAACAGCACAGAAGAGCACCAAACTCCAAATCATG-AAAATGGGAGGAAAA--CCTCCCAGGGTAAAAGGATTACTTTCCATC-CCGTGAGCGACGACCCCTGCATCCCAAATCATCCCATGCAAAACCCACCTTGTGGAATGGAAATAATTAACAAAAACAAATATTAAACAAGCAACAGACAGGAGCAGCAGACACCCAGCCCGGCCTCTTCTGGTTTTATGGCTA---TTCTAAGTCTTCAGTTAGATATAAACATTCTTGTCCCCAAATGG-----AGGGACAAGA---------------AGGGAATTATTCTGAAAGAAA---TACTGAAATT---------CTATTAATCATAGAAGAGAAAAATGAATAGTTAGTAGTTTGAGTT-TTTAACACAAAGAG--AAGAAAAAGCCACTGAAAACTGGAACTTTAATTAAA
s HiC_scaffold_1 140569305 542 + 233722169 tcttttaaaacatt----gAGCAGTAAAGTCTTGAGGGCAAATCCTGGAAGAAGCCATTTGTAAAAATTAGCACTTTCTATAGCCCTGTCATCTCACC--CTTAGCAGAACTCATTAAGCACCCAGAACAC-----------------------CTTGGAAAAGCACCAAATACCAAATCatgaaaaatgggagaaaaaagatTCCCAAGGCAGCAGGATTGTTTTCTATCTTCCCCAGCATCTGTTTTTTTGTACCGCCGTATTTCATGCTGAACATCTTTCATGTAATTCCAATAATT------AGCAAATATCAAACGAGTAACAGTGAGCAGTAAACAACACT--------TCTCTGCTGATTTCACTGCTATTGTTCCACGCTTTCAGTAAGACATAAACATTCTTGTACCCAAATTGCCAGCAAAATTAAGACTGCCTCACCATTAGAAAGAATTATTTGAGAAGAAAAactactgggtttttttttttccttttaatcataGAAGAGCAGCACAAGCAGCTAGCCCTGTGAGTTCTTTAATaagaagagcaaaaagaaagctatagaaa---------ttaattaaa

a score=17330
s chr3           153756239 833 + 160039680 TAAAAGTATTACGGAATTGAGTTTATCCAGAAA------GCCTATCTAAGAAACCAAGGTCCCTGTA-------------AGAGCCTCCAAAGTTGCTTGGATTCATCCTGCCTTATCACACAGACTGGCTTTGATTCCCACTCACAAGAGACA---------CTCAGCTGCCTTGTGAGGCTTCCTTCTTTGATAGGATAGTTAAAGCCTACATCATTGTACGTTCTGGCACTAAAAAGCCATTTCAGCAACTTCATGCGTGGACCAAGGCTCTGCATCCCCTGAGACAGCTTGatcagttatggtccatctggctagcagtaaaagaagcccagtggtgttaacaatagggaaatttattatcttgca---agggaagtctagagggagTTAGCCACTCAGTGCCTCATG----GATGGTGAGCTTGCATCTTCTGAATGCTGCTGGACCTCCCCCTCTGCCAGCATCATTCCTGGATGCATGGGTGCAGGCTTGCATCAGCACCACTAGGGGGAAGAGCAGGAACCCTCCTCCACAGTTCTCT--CTTAGGGGTACCCCTGGGAACCCCTCCAG------------CCTCAGCCACCAGCCAGA-CTGTGTCACATGACCATCACTGACCCAGACATGAGTGAAGG---GCTAGTCTGTTTTTGCCAGTCAGGCCAATGTATGGACCTGAGATGTAG------GCATGAAGTACATAGCTGGGGGGGAGGGGGGGCGGCGGCAGGGGAGGAGAAgatacctaaaca---aagagttctatcagg---------aaaagaaaggtagactgggtgc---caagtaggaa----ccagtctg-------tcTCCTCAAACCTCAGGCTTCTA---CTAAGGGCATCCTAGAGACCAG-----GGACTCCAGCTCTGATTTGGCCC
s HiC_scaffold_1 140579409 846 + 233722169 TACAAATACTATGCAGTTGAATTTATTCTGAAATTGAAAGCATTCCTGAGAAATAAAGGTTCCTTCAGCCCAATTTAAGAAGTGACACTGAAGTCTGTTGGACCACCCCAG----ATCTCACAGATTCGCTTTGATTCTTGCCCTAAAATGGCATGCACTCATCTCAGCTGTCTTATACAGCTTTCATCACCGATAGAATAGTTAAAGCCTACGTTACTGTGAGTTCCAGGACTAAAAAGCTATTTGAGCAAC----TGAATCAACTCAGGCTCCA-GTCCCCTGGGACCATTTTATCAGTTATGGTCCATTTGGCTGGCAGTAAAAGAAACCCAGCGGTGTTAACAATAGGGAAATTTACTATCTCACAAAGAGAAAAGTCTAGAGGCAGTG----ATTCGGTGGTTTGTACGGTCATGGAGAAGCCAGGTTCCTTTAACCCTGTTGTGCCTTATCCTGAGGCTG----------------GTAGCCACAGAGCTGCAGCAGCACC---AGG-------------------CGTCACAGCTCCCTCACCTAGGAATACCTCTTCTGTCCTCACCCGGCACGCTCTGCCCCTAGATCACTGCTCAGAGCTGAGTCACATACCCATTCCTGAAGCAAATATTAGCGAGGGGATGATAGTATGCTTCTGCCTGCCAGCCTTACCCCTGGGCTGGGGTGGTATCTCTTCCCACAAAACATAT--------------------------GAGGAAGAAAGAGATGCCGAGATACATAAGGCTTCTGACAGGATGGATGGAAAAAGAAAG---GACCTGGTGTAGGAAAGTGGAAAGGGTTCATTTAGAGTCGATTCTTTTCAAAATGCAAGTTGTTCAATCCAAGTAGGTTTCAGAGACAGGGAAGTGAATTCCAGCTCTGGTTCAGTCC

a score=32727
s chr3           153770813 2045 + 160039680 GGGACCAGAAGCTACAAAGGACGGTGGCCCCGGCTGCAGAC-ATGTGACTC----------ACCATCCTAATTC---AGTTGAGGGCAGCTATTGAGT-GGACTGGTCACTTCTAAGGAAGTGCTT-AAAGGAAC----TCTGTTTCTTAAAGGAAATCTTTGACCTGTGTGTTAGGGTTCCAGTGACAAATTT-TCTAGCTGCACATTGAAGG---ATGGAAAGAAaggtgttgtttgctttctgctatggtatacctgttacacagaggctg--cagggagaagctatacataa---gtaatttgctgaaagcaaggctgtgcagccctcctaccaggcttctct-----------------cctggcatttctcttgtccaggctcaGCAGTTACAG--------------------TTCATGCCTTGG--------------AACCTATAACTGCTATAAACAACTTCCTAAGGAGCCCCACCCCAGTTTGATACGAAAG-CTGAAGATTTGATTGCTTAAAAT------------AGTCTCCATGGCAATTATATTTACAGAGGGAGAAAGACAAGATTGAGATGGGGAAT----GTCACCCAAACAGCCTTTGAAGTCAATTTTGTAAGC-TGGCATTGAAATAGATGGTTATAGAGCCATCTTGAATGAGTCCCCAGGCCAA-GAGCAGCAGCG--ATCAACACACCTATGTGCTGGCCCACCCTCCCTCACTGCTCTGATG----GTGAAGGTCTCTAACCCCAGCAG-TTGTGTGTGCTGATGGGGTGGGCACAGCTGTGGAAATAGCCACAGCCTAGCATCCCGGTTTCTGTTTGCGTTCAGACCTTAGGATGTTCTTCATCTGTTTAAATTTCTG----TCTGGCAGAAAGATAAGCTTATCTTTTAAATTTGCACAATAAGGACAGTGTTCT-TGAGATCTCAAAGTTAGGGTCA--GAGACGTTAGTGATTCAGAGGCTGCTGCAACCAGACATGAATATGTTGCAAAATGTCCATGGCCTGGGCACAGATGCTGTG---GTGACCTAAACTTCATTGgagagagagagagagagagagagagagagagagagagagagagagaTCAATTGCCT----TGTCTAGTTTAAAGTGCTTGTTTTCAAGCTGTTCCTGTCGCAAGAATGCTG--TGTCCTGTCTTAATGGATGACA-GAGAGGAAGATGGCATGGTAAAAATTGGTGGATCCAGAAACCA--TGTCTACGAATTCCACATTGTAGCTTTCAAGTTGATTCTAGGCT-GCTGGAAAGAAGCTT-TCAAAGCATAAAGTC----------CTGTCCCTGGAACCCCTGAGATGGGCTTGTGGGAGTTGAGGTTTCCTCAGTGATTAGGACAGTCACTGCCAGGAGCCATCcctctgtgttcagtcccaaatccaat--ggacaatcttactgtagttcacttgacctctgagtaacattaaacTTGCTGGGTTTGGAAGCAGAGTGGACATAGGAATAATTTGCTGTGCGCACACACATGCGCACAGAGGCATTCACCACAGCAGTACTGGCATG-AGTTTGG-------GATATTAAATACCTATAGCACATTAAGACTTAACCTTGAAGAAAGGGGGAAGGGGT--------TCTGACGGAAGGGAAGGAAAGAGCTTTAGAAGTCAC------AAAAGTTACCAAGACTCAGAGTGTTCATAAGCTATAGTCTAAGGTCCGGCAGAACTCAAAGGAAGCTGGGCTGCATAGACAAAGAATCCACACTGCTCCCCATAGCTTGCTGTGCCCAGCAGTGTG----AGGGCACACTGAATTCAACCACAGTAGCT-TGATGCTGCAAGAGACAATGGGTAAGGGGTCTG--GCATAGTATCTATGTTATAGTAAGACCAAATGCATAGGGTCTTAATTGTGTTTAGAAATGCGTATCAGGGCATAAGGGACTTAAATGGAtc-tacagg------tttcttccaggtgtttattgcttctgctgtggctggagcacttcagtctcaggtagcctggtccactataggagacctctcataattaatagcccttctgtaagttgacccaaagcctctccctctacagaccctacccatctaaccatgtctaaccatgtcttcatacaacaggga----ttctagtactcagagac--------agtaaccttcccctctactcaca
s HiC_scaffold_1 140589614 2026 + 233722169 GGAGCCACTAGCTGTGAAGTACAGTGCTCCTGGCTGCAAACCATATCACTTCTGTCCTGAAGCAATTTTAATTCTCCAGTTGA------TTGTTAAACAGGCCTAGTCATTTC-AAGGAAATGCTTCAaaggaatattttttgtttttca-------tctttgatttGTGAGTTAAGATtcctgttttaaatttgttttgccaAACATTGGAAGTGCGTGGGGGAGGGCGTATTATCTG--TTCTGCTACAATAAGCCTGCTGCACTCCAGACGACCAGGAATGGGTTATAAATATCCTATAATTTGCTGGAAGTACTGAGGCACAGCTTTA-TGTCaagtttttcttattgtttttcaaaCCTCCTGGCATTTCTCTTATCAAGATTCAACAGCAGCAGGCCCGTCGCTCTTGTGCCCATTTATGCTTTAGTGCAAGACTCCAAAAACATTTCACCGTTGTAGGTAACTTTCTAAAAAGTTAAATCTCTGTTTAACGTGGAAGGTTCAAGGTTTGCGTGCTTGAAATTCTTAGTTCAGCAGTCATTGTGGAATTTATGTTTGCAAAGGG-GAAAGACAAGATTGAGATGGGGAGTAGGTGGCACCCCAGTGGCCTTTGAAGTCAATCTTATAAGCAGGGCATCCAAATAAATGCTTACAGAATCAACTTGAGTAAAGCCACAGACTGATGACCAGCAGCAGCACCGATGTATCTCTGTGCTGACCCGCCCACCCTTCCTATTCGGCTAACAAGCAAAGATTTCCAATACTGTCAGACCGCCTGTGCTTATGCGGAATTCCCTGTGATAAGAACAGCCGCAGATTGAAGTCCCT-TCCCAATTTGCAGTCTGGCATCAGAATGGTCCTCATCTGTTTAAATTTCTGACTGTCTGGCTGAAAGATAAACTTGCCTTTTATATTTGCCCAATCAATAGAATGTTCTGTGAGAGCTAAAATTCAGTGACATGAAAACTTTTGTGACTTCAAGGCTATTTCCACTAGACATGCTTATCTTGCAGAATGTCCACAGCTTTAGCATC-ATACTGTGCTTGATACCTACCATCCACTGCAGTGGGGG-----------------------------------------TTGCTGAAGATGTTGACATTGAAGTGCTCACTTTGTGGCTTTTCC-ACCTCAAGGACAGTGCATGTCTCATCTTAATAGATGACAGGGGAGGTTGGTGGCATCCTAGAA--TTGTGAAAGCAGAGGTCACCTGCCTAGTGATTCCAAATCACAACTTCACACCTGGTTCCAGGCTGGCTACAAAGTAGCTTGTTGGAATTCAATGTCATCAGCTTTAATGCTGCTGGG--CCATGATGTGGGCCCTGGGCATCTGTGACTCCTGCAG-----------ACCATTG---------------CTGAATTCAGTTGCTCACTTGATACAGACAATT---ccgtcactatgtagccctgcaGGTCCACTAAAGCTTTCTGGGTTTGTGGGCAATTCAGACAGTAGAACAGACCACAGCAAATACATGCAACCGggtaacaaca--aaacagagcaaaacaaaccaGCAACTTGGCTTTACAAATGTTAAGTGGCTaaa---------------------aaggagggggaaagggaTTAAGGTAATTTCATGGGAGTATAAGAAAG----TTTAAGGCTACTGAGTTAAAAATCACAAAGACTGGGA------------------------------AGAATTGCACAGCAGTT------------------ACTCACAGTGCT----AAAA-----------CATCAGGGTGGGGAAGGTCATGTTCGATGCAG-TGCAGTGTTTGTGTTATCACGAGAG-TGCTCTGCTAGTGCTCAGCTGAGTAGGACCTAAATCACATTAGGGACCA----------TCTAAGTCACATTAGGGACCATGTGTCACACCATAGCAGACTGAAATCAGTCATCCAGACAGCATTTTCTTCCAAGTGTTT----TTCCTGCTCCTACTTGAA-----TAGCCTGAGATAGCCCACTCCACTTTTAGAGAGCTCTAATAATTAAGAGCTCTTCTGTATACAGAGCTAAAATTTGTCTTTCTGTAGTGTCTACCCATCTATCCATGTCTAATTACGTTTCCACAAGACAGAGAGCTTGTCAGATATTCAGATACTTACCAGGTGGAACATTCCCCATTTTTCACA

a score=13506
s chr3           153773563 737 + 160039680 GGCTACCTGATCTCAAGCCGAGAGAGTTCTGCCACACTCGTCTTTCC-ATACATTTCACCTTTCCCTCCACAGTAGCTCCTGAGCTTCAGAATTCTCCCTTGAGAACTACATCATTCTTCCCACATTCCACTTCTGACAG----CTTGATTTTGGACTGGGATGTTCCTGGAAATAAACTTCTCTTTGTTCTGTCAAAAAGGGATACACCCTAT--------ACTGAACCTACATTACCGAGCGAATTCTTGCCAGGCTCCAGAGTGCTCAACCTCTTCACAGAAGGACCATTGACAGCCCAAGCGTCCTGAACATGGTTTTCTGAGC-TCCATTATGTT----------------------------------------------------ATGTTGGGTA--ACACTTGCTCCTCCAAAAC-TCACACTGTTATATTTCCCTGCCATGCCAAGGTCTCGAAGCTCTGGACCATTATCTAGTCTGTGCACTACAGTCCCAAATCATTGTCACCGGCCAACAGAACTGTCAGGGCAATG-----cttctcttagtcattaataaagttgttgaagag---taatatcagtgatagatcttttgagcatgcctacgaaatttctagccgtaggatgacatttacctgttagaacatgccttctgggcatTATATCGTAA-AAACTGATGAACTAGTAAAGTAGCCAAGTAAAAATA----------TGATTGAATTATACATAAAATGAAGGTGGAGGGAAACGTAGAGAAGCCTGAGAAACTGTCACAGTAGAGAGGACATGGAGAAGACATGAGCACTGGGTAC
s HiC_scaffold_1 140591915 776 + 233722169 GGGCATCTGATGGGAGACCGAGTGGGTTCTGTCCCTGTCACTTTCCCCATCCTCTTCATACCTCCTTAGACCACAGCTATTT-GCAACATCGCACTCCCTTGAAATTTATTCCATTGTAATCACATTGTATTTGAGACTAGATATCTGATTTTGGACTGGTATGTCCCTGGAAATATCCTTATCTTTCTCACATGAAAAA------CTTCTTATGCTTCTGAACTGAATCCA-ACCTCCAGGTTATATCTTGTCAGGCTCCAGGGTGCCCATTCTGGTCACAAAAGGAGCCCTGATAACCTAAAAGCCCTGGGCATA---TTTTGAGCATGCATTCTGTTAAATCACACCTCCACAGGTAGTATATTTATGGAAGTGGCATCCAGCATGTGAAAGTTGGGTAATACATTCATCCTTACAGAACTTTATGCCGTCAGATATCTCTA-CAT----AGTCCCTGTGGTTCTGGACTATTATCCAACCTGTTTGTTTCACTTTCAAATGTTTATCACCTGCCAACATAATTTGCATGGCAGCAATAGTCTTTTCTAAACCATTAGTAAAA-tgttgaagggaaaaaaaatcagtgacagGCCCTCAAGGC-----------ACTTCTACCCATA----TACATT---------GATCACACTCTCTAGGTATTATACTTTAATGAGATTAGGAATCTATAAAGTAATCAACTGAAAATACACTAAAGACTAAGTGAATCAT--------TAAGGCTctgaaaaaattaaggaaaatctaTGAAACAATCACAGATCAGAGAAGAATAAGGAAACATAACAATTAAGTAC

a score=17889
s chr3           153776053 693 + 160039680 tacaaatgccata---GCACATCACCT----GAAGTATT--AGGCCAGCCTGCTAGTTACTATGTTAGCTGTAGACTGCCTGGAACTCAAATAATTGTCTGAGAAGTGCAGGAAATTCTGTTGTAATTGCCAGACTTCC---ACTCTGCATCCAGCAAACAGTCACTCCCAAA--------CTGCTTCTGCTTGCCTTCATTTTAATCCAAAGCAAGCAATTAAGGCATTTTCTCTCTGGAAGACTTCTAATGAGTAAATTTCCATTAT-TTTAATCACAAAATGTGAGCTGGCTTTTC-----TTAATGGATTTTGTCTTGT-GTTGTAGATATACATTAATGTTGCCAGGGTCAAGTAGAGCAGAGCCCAGTGAAGACAGGAATTGGCCAACTTCCTCTCTTGGTGCACAAATTAATAAATGCAAGAAGAAGCCCTTTTGGTCCCAGAGTTAAAAAGGACAAAAAAAGTCTGTAACTCTAGCCTAAGCAACTGGGACTAGACACTCTTTATA-TTAAATGGAATTGGATTATGGATACA-ACAAAAATGTGGCAAATGTGATGAGAACT----TAGTGGTTTTTACAACTATATAGTAGGTAACTCACTGTACC--AAACCTCGGCGTAAACACTAAACAAATACCCCATTTAGAACGAagggattatttgcccttttccatagaagaaaaagcctgatgctcagagacactcacatgtccaaaat
s HiC_scaffold_1 140594179 713 + 233722169 TATAAACTCCATTCTTGCACATCATTTTCTAGAAGTATGTGAGGTGACTCCCCTGTTGATTAGTTGGATTGCAAGCTGTCCAAGACTCAAACAAATGCAGAAGAACTGCGAGAAATTGCTTCCTAACCGTCAGACTTCCTCCACGCTATGGTCAggaaaca--caatcacaaagcttgtTGCAGTTCCCTTCTACCTTTGTTTTAatcaaaatcaaataattaaaaaatgttcTCTCCGGAAGACTTTCAATATGTAAATTTCCACTATCTTTAACCTCACAGTGTGAGgtgacttttcctttcttaatgaATCTTGTAATGTTGCTGTGGGTATGCATTAATCCAGCCATGGACAAGCAGAACATAAACCACGGGAGCCAAGAATCAAGGAACCGCCCCTCTCAGTACACAGTCTCCTAAGTTCAGGGTATAGCCAAAATGGTCCCAGAATCAAACAGCACAAGATAA-TCTATTACCCTTTTTGAAATCGTGGggattaaatattatttatattttaatgttaccATCGTATACAGACAGAGGCAAATGTAGTAAATTGGTTGACAACTTGAATGGtggattttacaaatgt------tatctttTATTATGCTCAAAACCCTGTTTTCAATAT------ATTACTCCATTTAAAATAATGGAATTATTAGCTCTTTTctatacatgagaaaatgtgGTGTTCAAACATGTAAACTTGTCCTAGAT

a score=4432
s chr3           153779447 221 + 160039680 AACATACCAAAACAACCAGAGTTATTGCTCTGAAGAATTTTTATGCAAAATATACTTGTGGGAAAGTACATTTCATGACAGAATGCAGCATTTC-TGCCTCCATTACTGAGTCTGCTCAACGATAGCCTTGTTAGGCACCTGCTATGACAATAACTGTGTCAGCTAAGGAGCTGCAGAAAACCATGGTTGCCTATACAAGCCTACTGCCATGAAACTGAAAA
s HiC_scaffold_1 140597153 204 + 233722169 AACACACCCAAAGAGCCAGTGTATTAGCTCTGAAGGATTTCTCCGGAAAATACATTAGTGGTGAAGTGTCATTTTCAGTGAAGTGCAGCATTTTGTTCCATCAGTACTGA---CGGTCCAC--------TGTCAGGCAA-------GACATAGACATTGAGACACAGGTAGCTGCAAGAAGCCATGATGGTGAGCACATATAGACTGCCACGTATCCAGAGA

a score=12381
s chr3           153780540 274 + 160039680 AAAACAGGAGCTCACTAAATATTTGTTGAATACTCTCAATTAAGTGATGTCTATTTGCCGGCTTCATGGCCAGGGATTTCTAACCTGATGGTGACTAATAGTCTATCTAGTACAGACTCACACCAAAATGAGCCACTTTGGAAATGCTTGCAGCTGCCACAATGACAGATGCTAATTTAGGTCACAGATGTTCTCTTTTTAAGTATGCATAAATTCAGTCACTGTAATGCTGTGTCCATACTGTGGTAGTTGTTAAGATACATTGTTCAAggct
s HiC_scaffold_1 140598064 269 + 233722169 AAAACAGATGCTCAACAAATATT-GTTGAATTCCCTCAATTAAATGAAATCTATTTGCCCGCATCATGGAGAGGGATTTC-AATCTGCTCCTGGCTGATGGGCTGGCTTAGAC---CCCACAAGCAGATGAGCAGCTTTGGGAATAGTTGCAGCTGTCAGAGTGACAGATGCTAATTTAGGTCacagaaattttgttttgaaatatgtgcAGATTCCCTCAGTGCCATCCTGTAGCTATGCTGTGATGGGTCTTAAGATAAAATGTTCACAGTT

a score=24310
s chr3           153781675 2460 + 160039680 CCCAGGGATCATCACATTGGGGGTCAGAGGGG-------------ATAGGTGACGAAGGAGGGAAGTCCAGGCATACAG-AACACACAGAACAGGG---TAGAACATTACATACAGAGAATG-----AGACATTTACCACTGCTGCCCAGGAACTCCAACACAGGCACTGATAAACAGGAAGGATTG-----GAGAGATGAGCAGGAAGCAGTTCCCAGAGACCCAGCACGACG--CTGAGTCG------GGGTCTCAATCACCACCCAGTAGGAAACTGGTAGAAAT-CACAATCGCAGTGTTTAAATGAAGAGCCCTCACATATGTATTTAAAAATAAAA-ACCACCCCGA-GGCTAGGT--AGAACAGGGATTGGATCACC--------AGGCG-------------------TTCCAGGTTAGGTCACGGTTGT----------GAGGACATGAGAGTTATAGCGGTGATTTTGCAGGAATTGATG----------AAATCTAAGACAAACCT--GGCCATCACCCAAGGAAGCCAAGATAAAG--AGTTTAAAAATCTAAGGAACCAGCAA--GGCTCTAA-------------TAAGATTAGTCTGAAGTAACCTCTGATCACCAGAGTTGATGATGGAGG-----ATGGAGAG-GGAGGCTGCAGACTCATGCAGACCACAG----GTTTCAGGCCTCCCTGAGCAGCAGCGTAAGGCCCCCTGCAGCATGGTGTTTAGGTGTTAGCCTTCCCAGGTAAGAGATTCTCACCAGCTGC-CACAGGGCTGAGACCCACGGCAGCAGGAACCTGGGAACACGAAGCTCCCATCTCCCAGCATCCTACCTGTAGAGTGCACATGATGGGAACTAATCACCCTGCTGGTGGACAAACCTGAAGGGATGACTGGAAGTTGGTA-TAGGA----GCCAGGGTTCAGCCAG---------TCTCT-----------TTGCGGAAAGTGCAAAGGTTGAGAACTAGGGTTAGGGCGGTTTGTTAGCAGTGACAAAGGCTCTTCCCTCACCCAATGACCCTCTTAGTCCCATGC------------TGCCTATAGTAATTCCT--CTGATTTCTTACTCCTGCCCCTCTCTGTAGAGCAGACTATGAACTGCTCTGACCTCTGCAGTCACGTGACTCTCGTGCTGATGTGTGGATCAATGCCCAGGAAATGCTTTTCTCCCGAGAAGCTTCAAGCACCTCAAAG-TCATC-AAAGCAGTTGAACAGCTTCAAGGGCTCCT-GAGCCTTGATGTGGTTGGGAC---AGTG---AAAGC------------CTGATTCCTCTGACCTGCCCAGATGTGACTGAGACAGGATCCTGCAGGGCAGGGTCTTATTGCTGTTCCACGTGTCCTATAGCTGGGGTTCCTCAGCACATCTGGGCTCCCCTGACAGAACAAAACTG-----CTGTGGATTTCTAAGGATTTCCTTCACTTTGTGGTACCGAAGGCTGACTCCGT-AATAGCTCTGAGTCTCTGGATTTAAAATTCATTCTTACTGAAGACCTGGTGTGACGCTGGGGCTCAGGGGGAGATAA----ATATTTAGAGGGAGAGAAACCTGCAGAAGCCAT-CAAAAGGCTACATAAGTTGTGTGAGGAATTTTATCTTTGGCTGTGTG-------AGAATCAAAGATATAAATCTGTAAAGAATGTCGCGGATTTATCATTTTATCATCCTCCTAGGGCTGGAAATGCTGCCATTGTATGGGTTCCTAacacacacacacac--acacacgcacgcacacacatgcacacacTATGCAACAC----TCACAATGCAAGTTCTCAAGACAGCAAGCA--------ATAC------AGCAACCAAACATAAGGC-------------AAATTCTTTCCAGAAAGTACACACAAG--CAGAGACACACCC---TGAGTTTCAACTCGAGGCCAAT--------GTAAATATCCCAGGCTCTG--------CT------------------------------GAGGACCCCATCTAGTTCC--------CAGCTAAGGGACACTCTGCCTTGCTTTTAGGCACCAGTGAATGCTCTGGTTGGTGACATTATCTAG-CTGAGTGGCCTC-------------TGAGAGCGTGAC--AACAGGGAAGTGCCAGTGACTACACACAGTAT------AGCCA--CATGGATATAAAGCACGG-----------ATTCTAGAAAGGCTATCTCGGCACTCGACACACTTCCCACGGGAGTGGCTGCTGACTTCCCATGAGAGTGTTTTCAGAATCGACTTTGGAGTAAAAGTACATAAAGCTGGAGGCAG-GAATGGAGAAAATCCTGTGGAATAGCAATTTTGAGAACATAGAGGCTGCTTGGTGGAAAATACCAGCGAGGAC-----ACAATACAATTAATAGGAGGTAGTTCCAGCTGGCTTCTGTGAGGGACTGGCCAAACCTCCGCCAAACCTATTATCATGGTGGGGACACAGAGCCCTGGAGCTGCTTTCAGTTTTTCCAATACTTTTAAGAGCTGAGGTCTTGCAATAACAATTACAAC--------------------------------------TTAATTACATGT-AACAACA-CTGCAAAATTAATTTTGTCTT-------TTTTCACCATTAGGTTCATTTCATGTAGATGCCCAGAAAAATTATAGTGTTTACAATCTAT-----CGTGTCTAATGTGTGGATTCAGACATTAATTTATAGGGTTCAGGGTTTGTAGACTGTAGGACAGCAATGCACAACCCCAGG
s HiC_scaffold_1 140599310 2701 + 233722169 CCCAGTGACTGTCACACAGGAGTTTAAAGGGGTAAATGCAAGTTCAGTAGTGGCGG-GAAGGGAAG----GGCACACAGCGGCAGATGGAAACAGGCCTTAGAGTGTT---TGCAGAGGGAGCTGCAGGCCGTCCAGTTCTGTTGCCCATAAAGCCCAGCACAGAGggaggaaaacacagagaaatgcACAAGGAAGATGGGCGGGAAGCAGTTTGTGGTGGG--AACTCGTCGAACTAAGTCGTGATCAGGATCTTGAAACTTACTCTACAGTGAAATGGTTGAAAAATGCAACTAAAGTAGATAGGTAAAGAATTGCCATGGCtatatttaaacaaaacataTTACACTGGTGACTGCACCAAAAAAAAGGATTAGATGAATGTGTTAGGAGGTGGAGAGATGCCTAAATAAGATTCTGAACTAGGGCATGGTTGTCAGCTGTCAGGAGGAATCCAAGAACTCAGAGGTAATT----AGGGCTAGATACAGAGAGGGAAGGTCCAAGAGAATTCACAGACTTCCACTTGGGGGA--CAAAATAAAGTGAATTGAGAAGTCCAAGGAAATTGCGATAGGCTTTGGATCTTCTACACTTCAAGGTC---CTGAAATTCCCTACAATTATGTGAGTGTTTAGTGGAAGTGGAGACCGAGAGCGGAAGCCAGACACTTCTGTGAATTCGAATGGCATTTCAG--CTCCATAAGCAGCAG-----GGTGCATGGCAGATTGGAGTCGGGGCTTCAGTCTTTCCAA-TGTGAAATCTACACGGGGTAAATGCATGCCCACGAGATATGGCATCAAAGGTTTAGGGACACTGA---CACATCCCTCAACTTCC-ACCTGT-GCGTGCACAGTCTGGGAA---AACAACAGCCTGGCAAACAGGACTG------CGTCCGCAGCTTTGCACTAGGACAGTGCCCAGTTTGAACCAAGACGTTATCTCCCTAATGCCCCGCATTCTGGAAGG----GAGCTTAA-----ATGGTTCAGAAGGTTTGTTCGCAGTGGCACAAGCTCT-CCCTCACCCTAT-ACCTGCCAAACCCCATACCACCTCCAGAGATGCCAATATTAAGTGCTTGCTAATTCATTA-TCCTTTCTCTGCTAGCGGAGGGCACCATTAACCGTTCTGACCTCT------------CCTCTTCACTGATGCTGTGATCGATGCCCACAAAATAGCTTTCTCCTGAGAAGTTTCAAGCACCTCAAAACTCATCTCGGGCAGATGAGTAGCTTAAACTGCTCCCAGAACCTCAATGTGGTTAAGCCCTGAGTGTCCAGGGTCTGCAGTCCTCACTGATTCCTGTGATGGGGACACAGATAACAGAGACACAGCTCCTTGGGG-ATACCCTTACTGCCTTTCAGC-TGTCACCCGGA-GGGGCTGCTCAGCAAGTCTG-----CCCACACCCAACCAACCTGCCAACCTGAGTCTTTCCATTGATTTCCATCCCCTT-CAGCTTTGCAAGTAGACTCATCAAATGGTTCTGGACTTTTGGCTTTAAAAGCCATTCTCACTGAAGATGTGGGAGAATGTTTTTGATTTGGCTAATAAAATAATGTAGCTGGAAGGAGAGGCACTTGTGGAAAACATCCAAGAGGCTACATAAAATGTAGGAGGGATTCTACAATCAGTTATAGGTTACTCTAAAGCCATTAATATATATCTAtaaaaa-------------aacagttt-ttataTTCCTAGATCT----ATAGTGC--TTGCCTGGTCTTCTGACAAGAATGTCTACCGGACTATGCATGTGATCAAATGCAGAGGTTATTGAAAGCATGAGCAGAATAGGGACTCATACAACAGTCATTAAATTTATGATACTGGGGAAGTGAAAGAATTTATGGTGgtattttatagaaaattctTTCCAGATAGCACTTACAAGGCTGGAGACAAATCCAAATTATTTTTGACTCCTGGCCTATCATTCTTACAAGATAAGCCAGCCACTGGACAAATTCTTTCCCCTCTCCCTGTGTTTGGCTATTTTAGGAAAATCAGACTTAGCTCTGGGATACACAACTAACAGACACGTTGACATATATTTAATCACCTGTAAACGTCTCAGTTGGTGAAGTGATTTTGACAGAATGTCCCCAGCCTTAGACTTGTAAAAGCGTAAATGAACAGCACAGTAGCACTGGTCACAGGCTATTTCGGGTAGGCCAGGCAGAGTCCCAGAGCATGGAGATTGCTAATATTTTAGAAAACCTCAATTGCCACAGAGTACACTT-TCATGGGTATATTTTCTGCATGCTC----------TTTTGGAGTCAGTTTTAGAACCAAAGT--CTGAAGTTAGaagcagaaaaaggagaaaatcctGTAGA--AACAATTCCAAAGATATAGTGGCTTCTTGTTGGAAAATGTGAGAGAAGCCCACTGACAACCTCCTTACACAGAACCA-CCCATGCTGGATTCTGTGA--------CAGAACCTATACAAAACACACT-------TGCAAGTAGAAAGTAGTgcaactcttttcttttttgcttttgtcttttagaCTTGAGGTCTTGCTTTTCCAATGAAAACAAGTTTGTGAATGTTCATACCCTATTGAGGATATGCTGCTAATTACATTTCAGTAACATTTGCAAAATTAATTTTCCCCCAGTGTCGTTTGCACTGCAAAGAGC--TTTATGT--CTACACAGAATAATCATCAT-TTTACAACCCATTGCTACATCTAAAATCTACAGACTCAGGCATGAACTTACAGGGCTCAAGTTT---------TAGTCCAGCAATGTAGAAGCCTAAG

a score=44690
s chr3           153798804 3054 + 160039680 aatctgctGTTTTCTAGATAAGC--------AACATGCTGTTCAGGACTAGCTGCTAACA-------GCATTCTGAAAGTATCCTGATTTATATCACAAAT-GTATAGATTCCCAAGTTCTGAGAGACAGATGAG--AATGGCGTCCATCTCTCAGGCTTTGGGAAG--AACAGCTGAAAGTA-----ACC--CTGAAGTGGAAAGTCTTCAGTTGGCATAACTCAGTCGAGAGTGGCTGGCcaggagctctgtttgaggtgtcctgaatttaagatatccacaaaatatccaagctgggcataacagtgaaca---tctttctgtttgaatctgtagcttgggagaaaga------tagatattcta--------gtcatcacagtgcagagagaactg-gagaaattagtctcatatggtcacag-agggaatgtgtttagagaagaaaataggGTGGTGGCCAAACCAGGAACTACTCTAGCATGGTAAGATACTGAAAAGGCTCAGCTACCAGGGCAGGAAAGGGTGCAAAGAGATG-CATCCAAGTGACA-----GGCGTACAGGT--GCTTTTGA-------------TCCCATACGAAGGCATGATGCCCA---TCCCCCAAGTTCCACTGATCATGTGACTTAGAACATGGACGCCA----GAAAGAAGTTCCCCAATGGCTATGCATGGTCAGAGCCATGCTAGGAGACAATATGACGCATTTACCAGGTCAGTTAAACTGGGGTTTGGCTTAAACTCGATGCTAACTTGCTTTGTGACTTAAAGGGTGTCCTAGTCATAGCCCGCCCCC-TTTCAATTTC-----TCGTGCCCAAGTTTT------TAATCCTTTATT------------CATCCAGGCCAGTGTGACAATGCCGGTATTCTGGGAGGCATGCTGAGTGAGGAAGCCCCATGGTCTATGGGATCCT-CTTCACTGTTCTCCAAAGTTATGTTTGAATGCAAAGCACGCAACGAC--AGCTGTGTCCTTAAGGTGATTTGTTGAGCTCTCAGAGTTAGAAATGTGACCCGGGATTGCTCTTAACATGCGCTTGTTTGTTCGTTTCCGTGTTtgtgtatctacc--ggcaccacggtctgctctagctctgggtctatgacgatgagtgagacacagtccttgtccccaagcaacccgcaacccaacagaacaacagtcaggtgaccaaaattataTATG--ACAGTGATGCATTC----------TTCTGTTGGC-TCCTGCAGTAAGCAAGGGTTGGAGAAGGCTACTGGGCCATGGCTGGTGAAG-TTGCTCACACT-ACT--TCGATAAAGCCCATTTGAGACAGTGAGATAGACAGT-GAGTGGAAACCCTTCATTTCCATCCATTTAGAATA-----------CAGATGCTTTACAACCCCGCCCCTCCTGGAAACACTTAGATTCCCTGACAATTACT-------TAAATGTTTCCTGACTGAAGGGTGCATTTT-GTCCATGCAAAATAGTGCAGAAAAAATT--GGCAATAAGACAGCAGGAAAATTAAGGTGCTTAAAGCTCCAAG-ACAAACATCA-GACATCTACCTCCCGGAGCACCTG-CCCTCTCAGACACCTTGCCAGCAACAGCACCCACCGCAGAGCCCCCCAGGGCTCCCTGAGATCCTGCAAACCAGCACTATTCTGGTTCGGTACTTCTCAATAACAAGGCAAATATTGTGCTCATTTACAATTAAATTCCATCAGTACTCACACCAGA---AGGATGAGGAAGCACA-------AAACAGCCTGAGGGGGCCCACGTATTTTCATTTTCTTTGCCTTGTTCATGAGTGGTTACTTT--TGCTGGGAAAGCAAGGTCCCATTAAAACTGGGGAGGGACATTGCGTCTATTTTTCCCAGGGCCAGGACAAGAGGGGAGGGAGGAAGCTCTAGAGGGAAGACTCAAAACCGAAAGTCCAAAATGGAAAGG--AAAGGAACTTTAAAACTATTTGATTgggctggagagatggctcagtggttaagagcactgactgctcttccaaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatctcccagtgtgt-ctgaaggcagcaacaatgtactcacacataaaACTATTTGACTACATATACACAGGGCGTATTCTCCGTTTCCCTTTCAAGACTGTGGGGCAGCTGATTCTCCCAGCAGATAAATTCTCAACTTCCAGCAGCCAAAGAGGGTTGATAACGCTCCTAACTGTGCTCCTTAGCTCAGACCATGCTCAGGGCTTGCATAGGGGTCAGTCTTTTTAGGAAAATCGTTTTCTCTGAGTACAGAATT-CCACTGGAGCTCGTTAAATTGG----CAGTTGTGTGATTTGCACACATCTTCTCTTGGTTAGATTAGGGGTATTCATTCAATAAGAGTTTGAGAAGGAAGACTGTGTGTTTCCTTTGAAAAATCCCATGCGTGGTCCATTCAAACAATCATGCTCTAAATTGATTCCTATGTCCGACCTATGTGATTTTCAAATCTGTTGAATAGAACTCAAAGAATGAAATTTCTTTTGCCTTTTATGCATGGTTGCAGATGAGGTCTCCATTAAGACCATTTT--AGCCTGTAGAAAAATTTAAATAGTGCGCTAATAATAGCTAAGTTCCAAGCACAGACCATTAGCACTGACCCTAGGCAAAAACAACATACAGTCAGTGCTTCAAGAAAGCAACACTTCCTCCTACTGTTCCAAACCTGCTTCCACACGATCATAGACTATGTCAGAAAAGCAGGCAtctctctctctctctctctctctctctccctctctctctctctctctctctctctcAGTTCAAATGATACTGTTGTAA-AGTCTACGTGACAAAAAATGC-TCAGAACCAAAATTCTTGGATCCAAGTTCTTTAGCCATATAGCTCACTAGTCTGAGTAGGCTTCCAAGAAATAGCAATTGTGCCAGAGCATATAGCCAGGAGGACAGGACCAAGCATGGAGTTCCAGCGATTCCAAGAGAGCCATCTGCTCTGTCTCCCCCACAGTA------------GAGAGCCTCCTGTCCACGGTGGCCCCGTTTGAAAGTTAA------AGCAAGG--AAAATGGCAGGAT------GTGGCGAGATGTTAGTAGTT---TCCCTGTGAACAAGGATGTGCTGAGAGTT----------------GGCATAAGTGATAC-TGggagc
s HiC_scaffold_1 140620525 2889 + 233722169 AACCTGCTTTGTTTTGGAGAAACCTCGGTTAAGCTTGTTGTCCAGAATTGGC-AATAACACTTCTTTTCATTCTGAAGGTACACCGGTTCACACAATAAATTGTATGGACTGCGTGAGTTTCAGAGACGGAGGAATCAAGGTTGCC------TCAAACTGTTGGAAGTGAGCAACTGGAAGGATGAAGATCTGCTGAAATGAGCAGTCTGTAGTTGGTAC----CAGTTGAG-GAGTATGGTCAGGAACTGAGTTTTGGATGAGTTACATTTAAGATAACCATGAGATACCCCAGT---GCATAACAATAACTAAGTGATTGTTGTTGAAGTCCACACTTTGGGAAGAAGGATGGACTAGAGATACCACCTTAGGAGTCATCAGCATGTTGAAGGTACTCCTAGTGCCTAGactaatgggctcacaggagggaATGTACT-AGAGAAGAAAACTG------------ATCATGGACTAACTCAACA-----AGAGACTGAGCAGGCTCATCTCCTGAAGGAGGAGAAAAGCCAACAAAATATCATCTTACAGATACTAAGAATGTGAAAGTccgttttttaaaaataatgtgcttCGAATATGACACTGTTATATCAACTTTCCCAGAAATTAACTTGTTAGTGAACTTTAAAAAGTTTACAACAATCTGGAAGAAATATTTGCATTATTATATAAAATCAGAGAGACGCTGAGAGATAACATGATACATTTAGCAGATCAGGAAATCTGGGGTG-AGTTTAAACTCAATGTTAACTTCTCCTGTAAATGAAATTCGGTCATAGATGTAGTCAATCTGTGTTTCAGTTCCCTCATTTGTG---AAGTTTTAGGCCTTCACCATTTATTGAATGTCTACTACATACAGG-----------GTGCTGGTA----------------GAATGAATA-----CAGGAGATGTGTGACACTGCGTCACC-----------------CTGCATGTTACCTACGCTACAACCAAGTCTTGCAC-----------------GGCCTCAGAACC------------------TTCTCTCAAC--------------TCATCTTCAGGTACAGATTTTCCCCTGGGTGCCACATCATGCCCCAGCTctgaaaatacaaagataaataagacACAATCCTTATGTGCAAATATTTCACAATCTAATAGAATGatag----atgaaaaaatatatatatgtggtaTAGATGCTTTCCTAATATTTTTTCAGTTATCATTCTCAACTCAGCAATGGAAAGACCTAGTTATGGAACTATAAATGATAAAGCTTTCTCATACTTACTGATCAATTTTATCTATTT-----AGTGAATTGCATACTAGAGAGGAAAATTTTGTTTCCCATCAATTTAGACTagttaaagaaattgaattcTTGAAAAGTC------TCCTGGAAACAAGTTGATTCCCTGACAACAACTATTATCTTAAATGTTTCTTGACTGAAGGGTGAATTTTTGTCTGGGCAAAATAATGCAGAGAGAAGTTGAGGGAAAAAGTGACAAGAAAATTAACGTA-TTAAAGCTCCAAGTACCAACATCATGACAACTATTTCTAGGAACACTCATCCCTCTAAAAT------TCAGCCACAAATACCACCTTAGAACTCTCTGAGG--------GATTTT-------------CTCATAGTTTGACCCTCTGGAATAATAAGTCGAATGTTTTGTTGATTTACAATTAAGTTCTATGAAATCTGACA--AGATTTGAGAtaagaaagcaaatgaatgaaagtaCCCTGAGGAAG---AAGAATGCTTATTTTCACAGTCTTTTACAGATGCAGTGATTTTGTTACTGAGAAAGCAAGAGCTCATTACAATTGGACAGAGACAAAATGCTTGCCTCTCCAAGGACAATGGCAAGAGGGGAAGCAGGAAATTTTGGAGGAAAAACTAAAGA-------TCCAAAAcgtaaagagaaaatgaatccAGAAACTAATCAGCTGGACTAATAAG----TACAGAGGTTTATAACAGT------------CAAAGTGCTGacttttga------------------------------------agtttttattgAAAGTATCATTgatg---------agagag----------agggaaagagagagag--------------------aaactgagagaGAAA-GATTCCCTAGAATCCCAAATTCTCAATTTTCAACAATTATAGAAG--------------------TGTTACTTGACT--------------GGATTATGTACCTATAAAActgtttaagaaagaaaaattct--gagtATAGATTTTCCATTGCAGTTTGTTAAATTGATGATCAGCTATTTTTTTCATCCAGGGCTCTCCT--GTTAGACTAGGGCTGTTGATTTAATGTGAGCTTAAGAACACAGATTATATATTTCCTT-GAAAAATTTAATGCTTGTCATATTCAcacaatgacattttaaattgatttctgAGGCCAAcctatataattttcaaatatgt-gaCTAGACCTCAAAAAGTGAGATTGCTTTTGCCCTATAGGCATGATTACAGATGAAGGTTCCATTAAGACCATTTTTCAGcctttagaaaattttaaatgacacCCTAATAATAGGTAACTTCTCAACATGAAACATTAGCACAGACCTTAACCAAATACAGTGTGTATTTAATACATCAGGAAATGCTAACGTTCTGTTCTTTCGCTGCCCCTTCACccaaacaatgagaaaaactATTACAAAAACAGA---------------------------------------------GTCTTTATCTCCCAGAACTAACACTATTTCTATAATGGTCAATGTGAC--AAAATGCTTCAGAAGTAAAATGCTAAG---------CTTGACTTGCACGGCCCATGAGTCTGCCAAGTCTTCCAGGAAATAGCTGCCATTCCAGTGTGCAAAACCAATATGATAAAGAAGAGGATGAAATTCCAAAGATGCCAGAATGACCATCTGCCAGG--GCCCCCATACTAACCTCTTGCAATGCCAGATTCCTAACCACAGTGACCCTGTGTGGAAGTGAGGGAAGCAGCAAGGGTGAATCGGTAGATTATTAGCATAGCTAGATGTTGGTAGCTGTAtctttagaaacaaaaatatatacacaattcATTGGGGCTTATGAGGGCATAAATAATACATGGGAAC

a score=11128
s chr3           153802989 743 + 160039680 AAAATATTTTAATGTGTAAATGCATAAAGTGTATGAAATCTTTTGTTTATTGAGACAGAGCTGAATTTTCTGGACCAATATTTCAAAACATGC--AAAATAAG----------ATTCAATAAATAAGAAGTTCCAGGCATTTTGGGGACACAGGGGATTCTAAACGGAAGTCAAACA-CAGACCACTTAGCATCATTTTCCGACTGAAATTTTTCTTTGGTGCTGATGTGACTTAAGATCTGTTGCAGATTGAGTCTGGTCTAGGTTCTGTACTCTAGAATGAGTGTACTT-----------AGCTGGGGAACCTGCAAAAATGGTGTATGGCTTTCCTTGTTAATAAATATCAGTTTATTGAGGGCTCTTCTATGGCAGCAAAATCACAGAGCTGTGTT-CCATGTGGGTGGAACAGACAGCAAGGACTTGGCAAGACT-------------AGACTTCATCTTGCT---TTGCCATT-----------------------------GTGGGGACA-------------------CAGACAGGCTGGGAGG--CCACCATATGCAG------AAGCTGGCCTTTCCCTGAATCTTAC------TCCTCTGTCAACGTCACCTTCTGTCCTGAAAGACCCAAT---TCAAAACTGATTCTTTATAA---AAGGATTGAGACAAACATCCTTAAAGATGCATAAAATCAAATGCTGTTTG-AATAACCTGAGAAAATTGTGTTTTAATTTTTGATAAAACTATCCTGATGCTCCTCATGGAAATAGCTCCAAGGAAAATCTTGTTAGAGGCCTCTGGCTTCATGGCTC-AAAACAGAGG--TAAGAGACCAAAAAGA
s HiC_scaffold_1 140627190 796 + 233722169 aaaaagttttaatgccTAA---------GTGTATGGAATCTTTTATCTATTGAGACAGAGCTAAATCTTCTGGATGAACA-tgaaaaacatgcaaaaaataaaattttattttattcaatgaatAATCAGCTCCAG-------------ATAGAACATTTTAGATTCAAGTCACGCAGCCAAATACTCAACATTATCTCCCATCAGAAAATGCATCTGGTCGGTTATGAGATACGAAATCTGTTCTGGG-------------AGATTTTGTTCTCTAGCATGAGTGTGCTTGAGAGAAAGTAAGATGAGTACAGGGAAAACATGG----TGACTTT--TTGTC-ACAAATGTCATTTTGGTGTGGAC------------ACAGGCTGAAGGTGATGTTTTGCTGCTTTGGTGGAATAGACAGCAAGGACTCAGCCAAGTTGTCTCACCATCTGAAATGTCATGCTGCCACACTGCAAATCCAAGAGAGAGCCAGCACGTGACAGAGCCTTGAGAACAACTCATCTGCTCATGTCCCCAAGAAGACTGGGTGGCACCACCGCCCTCAGGCTACAGGGCTGCCTCACCTCCGTGTGTCACCTTTGATCACCTATTAATGTAGTCTTTTACAGTGAAATATctcttttcttaaaagtttttattaataAAGGAAGGATTGAGACAAGAATCCTTAAAGGCATAAGtaatcaaatattattttcaaacatCTGAGAAAGTTG-----TACACTTTGACATGAGCATAGTGATAGTTCTTGTAAATATGAATCTAAGGAAGAAGTCAGTAGCAATTTCCAGCCCTTGGTCCCTAAAATAGAGACCTCCAAGACCAATAAGA

a score=7139
s chr3           153806401 363 + 160039680 ACAAGAGGGAAAGGAGTACTCCTG-AAGGTTAGTATGCCCGG---GCCCAGCCCCTCTGTCTGGATTAGCATACTTGGAGGAGGAATGCTGGTAGGCT---GAGCTGGCACGGAGCCAGGTTTCCTTGACAACTCGCTCTCCATATCTGACAGCAGGCGCCACCTGCTGTCCACACAAAGCAAGCACAACAGGCGGGCA--TCCTGCTGGAAGTCTATGAGGGAGATGCAGGTGTATTATTTATGCTGGCAG---------AGGAAATGCCCAGACTGGAGTGAACTAGACAGGACCAAAAAGGCTGGAACCAG--GAAGAGGTGTC--------------TTCTTGCCCACACGGGATAGGTGGGTTGC-CATGAGTGACCGTGATGTAACATACCT
s HiC_scaffold_1 140628870 390 + 233722169 ACAAGAAAGAAGAGGACAGTTCTGGAAGGTTAGCGCGTCCCGCATGCCC--CCTCCCCTTCTGAATTAGCATCCCGGGAGGAGGGGAGCCCGCCCGTCCTGGAGCTGGCGCCAAGCCTGGTTCCCTTGACAACGGACTCTCCAACTCTGACCCCACGCGCCACCTGGCGTCCACTTTAGGGATGTACA----GAGAATAATTGCTGAAGAGGAGCTGTTAGGCCGA-AAAGATACATTTATGGAGCAAAAAGGAAGACTGAAGGATACGCCAATATTTGGATGTAACAAATAGAACCAAAAATATAGGCTCCAGCCGATGAGGTGTTAAAACTCACGTATATGCTTAACCGtatgagattaa-gggcagcataTGAGTGTTTGTAATGTaacttaact

a score=7325
s chr3           153831176 145 + 160039680 TTGCAGGTGTGGCTGCTGTGTCACATGGATGTCAGTAGGTGGCAGAGGGGAGAGAGGCTATGTCTATGCTGAGTGTTCTGACCTTCAGACATCTGAAGGATTAGTAGCCTAACATTTCCTGAAAAAAAGTGAGCCTGAGACCACC
s HiC_scaffold_1 194511563 137 + 233722169 TTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC--------AGTGCCCTTGCAGCCACC

a score=33150
s chr3           153833160 2613 + 160039680 agagagagaaaaaaatgctcactccacggca-gctgcatagagaaggaag-caaggaaCACTCAC---------------GCAATGACTATCCTCACTAGAACCAAAAGTCACCC--aaaggt--caccgccctctggtgtcactgaaagctggggaccaagcctttaccacatgggtat-tctgggacagtcatccaagccaCAGCAAAACCCAATGGC-----AGGAGCAGGGTTCTGTATACATAA----AGAGTTCTCCATGAAAAGTCTCAAGTCTTACCTGAGAGAGGAGTCTGGGGGAGTCTTTGGGATAAAGCTCGGAAGGACACTGCCTGCCTAGAGAGCTGTGTTTCATGCACACATTAGAGCGCACAGCTCATTAACGCACCAGGCCTTGCTTTACTACCATTTTCCAACATC--------------CAAGAA-AAACAA---TCCAGGCATCTGAGTCGCCAAGA-----AGCATCTTATTCCTATCACCTACA---------AGGAAATGCACCGA---GATTGCCTGTCTTTCCTGACTGCTTCTGGTCTC-CCTCAGCTTTTCAGGGAAGCACTTTTAAA--GGTGTTTCAAGGACAAACAAGCTCAAATCTGATTATTATTTCTTTTGACAATGCTTATTAAAAACTAGAGAGACAGAGACCCTGTCTATTTCTCATTTCGGCCGACCTTGTCATTTTCTAACGACATCAGCAAGAATAAAGCGTTATCTGTGCCAAAGGTAACATTATCTTTGCAAGAGGATATATTGGAGAAATCTCTTGTCTGGTAACTTACACTTTTTTATCATTATGCTGAGAAGCCAAGGGAAAGAGTAAAGATTAATGTTGGTCAAATATAGTTTCCTTTCAAGTCTACCTTGGCATCTACACTACTGAGATTTCTAAGGCATCTTCAGTACTGAGATTTCTAAGACAAAGGCTTATATTAATAAGCTAATAGTAATTTTG----------TCTTGTCCTATTTTGTGTGTGCTTGTGTTTGAAGGTACACTAgtgcgtgccggccagaagtcagagtcaggtgtctctcttaatcactct---gcatcttattatttgagacaggttctttccctg-aaccttcaggacaggaattcagccagagcaagtcctggc---------tatccccctgtctccatttcccagcactgggtttgcagatgcaccaccacagcccgatt--tcaactgagtgctggggacccagat----tcaTACGGTATAGCTGAACCATCTCTCCATCCCTAATAATACATTTAATGTCAATTCCTCCAAAAATGCTAGATATGATGAGTCTATATTCTGCACATACTTTGATATTCATGTCTGACA----TTTCATTCTCACCAAATAAACAAACAAAAAAGCCAAGGTTGTGAATTAAAAAGAAAAAAAGTAAT-----TTGGTCAGGCAGACCAAGCTTGG-------AGAAGGTCCCCTGCCATCCACGGGTGGTGTTTACTGGGGAAGCCCTGAAATCATTTTC--TTCATCTACAAAGTGGGGATGGTTTTGAGCCTA--CAACATCtatatgtatgtgtgtttgtatgtgtgtgtgttgcatatatatTGGCTCCATTAGCTGAAGAACTCCAATT---------AATACAACAGAGTGCTAAAGTCTAAGAGGCAGTGgggatcagtg--------------acac----agctca---------------gtggttaagggctcagactgttcttgccaaggacccgaatttggttcctagttcctacatcaaggtggatctga-------------------tacca-----ctgacctgcactggagtggccacacccatttacagacaca-catatatacacacacaattaa---aaaaaaTTAAACGAGGCAATTAGGTATTTATTGAGTAAT------------TTGTTAAGTACAATTCTCGGCACATGCTAATATAAA-CACTACACATTGCCACATTGCCTTTCTTGTGACCG--ATAATACATAAATTGTTTTAGCCGAGTTGAAATAAAAATATCCCAACATTATCCTCTTGGATTCAAGACACAGAATAAATATCATAGTATTGATCAAAGCAGTTTGTCATCTATCTCATGT-CCTTTGTTGTCTGAGTTATTTGTTTTGATGAGACTACA----GATAGGATGGACTTCAAATCTGTCT----TTAGTTATTACAGCAATGGAGCTCATGTTGGCTTATTACAGTGTCAGTAACTTCAAGGTCAACTGCCTACTCTTCCTTTCT-----TACAGATATTTTAGGTCATTCATTTTT-AAAGCTGT-ATTTTCTAAAAATAAAGCATCTATGAGAAAAAATAGCAGCTCAATAAATAAGCTGTCCAATCAATGTGGTGGCACTGACCT-GCGTTGTAG-GAAGAGGCGATTACTTTCTATTCAATGTTCTTGTGAAAAGTGCACA--------GTACGGACAGAATATGATGCAAAATGTATTAAATGATCCGTTCA----------TTCCCAAGCAAAACCAGAGAAGCAGAAGTGGGGGGCTCACAGGAGGGGCGGGTAAGGTAGATGCTGTGCGTGCCTTTCAGATCCTGACTCAGCCCACTAGTCTtgggcagcccatttatatcaggcattgtggttagcactaagt-------atgtaaaagtgaaataaacacattctctgcccttgagctcacagCTTACACTCCACCCTTTGTGGAGTCC---------AGGGCTTGATGAAGAAA------------CTG--AGAAAAGGACTGAGTGGAG---AATACGGTCAGCGTGGTGAAGAG-ACAGGGAGGAGGAAG
s HiC_scaffold_1 140671777 2624 + 233722169 AGGGTGGAGGAAAAATGCTTACCACGCAGCAAgtaggaggaagagggaagacaGAAAAGGCTCCCAGCATCCCTTCAAGGGCAGCGATGTGACTTCCTTTCATGAGGCTCCACCTTTAAAGGTTCCATCCTCTCCCAGTAACACCACAGACTGAGAC---AGCCTTT--CTCATGGACCTCTGAGAGACCCTTGTCCAAACCACAGGGAGACCCAacggagaaggaggagaaaaagcacATATAACTAATCTAATAGTTCTGCATGGA---------GTCTTGTCTTAGAAATGAGGCTGGA--AGTTTGTGAGACCAAGTGCAAAAA-ACATTTACCTCCTAGAAAGctctattttatttatgtcttcggACACATAGTTTATT--CATATCAGAACTCCTTTAACCAGCGTTTTCCAACACCttggaggagagggacaggaaGAAACAAATGTCCCAGAGTCTGAGTTATTGAAAGTGAAAATATTCTACTTCTATCAC--ACAGCACAGAATAAGAAGTGCACCTAAACGATTTCTACTTTTTCCCAACTGCTTTTCATCTTACTTTAGATTTGCTGGGAAACTCTTTTAAAAAGGCACTTCAAGGGTGAACAAGTTCCAGTCTGATTGCTATTTCTTTTGACAATACTTATTAAAAACTGGAAAGAAG------TTGTCAATTTTTCATTTGAGGTGACCTTGTCATCTTCTAATGACATCAGCAGGAATAAGGCA-TATCTCTGCCAAAGGTAATATTATCTTTGCAAAAGGATATATTGGAGGAATTAATTGTCTAGTGACTcataattttttatctttgtaccacaaaaccaaggaaaagaaTGGAGATTCATATTAGTTACGtatattttcacttaaaatcCACTTTGG-----------------------GGACCTATCAATTA-------TACTATGGCAAAGATTTCTATTAACAAGTTAATAATACTTTTAATATTAATGCCACTATCATCTTTAAGGAGTG--TGTGTTC-CATGCACAATGATATATACCT-------gttatgttca----tttttttaaagaattctcagggatatagctctgcggcacaagtgcctgcctggcaagcacaaggtcaggcattcgatc---------cctggtataaaaaaatatC------TCACAAAACCCTAGGAC----TCTCAAAATT-----CCAAACCCTGATTGATTTATTAAATAACATGGATTCAGCCATCACCATAGGGTGGGAGCTGATTATC-------------------------TGTCATTTACCAC-------TTGTGTATGATAAG--------------------------AAATGTatgacatctttttctttttccccacttaaa-aagcagaa-----atagttGTGGGACCCACAGTAAAAGCGTGatgatgattaattttatgtgtcaa-cttggcTGGATCATAGGGTCCCCAGAAAT------------TTGACTA----------AACATTATTTTAGGTGTTTCTATAAAACAG----TATATTGAGCAAAATTAGCACTTAAAATCAATTGATTTCGTA---GAGAAAGTTACC----------CTCCTTCAATT--AGGCCTCCTCTTCTTCACTGAAAGTCAACAGTTGACC---TTCTCCCAGGTAAGAGGAAAAACTGTCCTCTTGGCCTGTGCACAGGGAGCTCAATCTTTCTCCTGCTTGTGCATTCAAACTGAGATTGATCATTCTAGGATCCCAAGTTTATTGAC---------CTTTAAACTGGAACCGGACCGTGGGCTGTCTTGGGTTTCCAGCCTCCTGACTCTCCCTGCTATGTTTACACACATGTACACTCCTATCACGGACACACATATAATTTGGTTACAAAACTCTATAGGGTCACAAGGTCTACGTGAGGTGATGGAAAGAAGTGGTTACTGAGTACAGCGCCTGGTGGAGAGTAGCACAAACCACCGCATGT-------TTGCATTTCTCAGAAGAGTCACAGTACATAAATCGTTTTAGCTTCTTT---ATAAACATATCCCAGCATTGCTCTCTTGGCCTCAAG--ACAGAGTGAATATAATAGTATTGATCATCCTTGCTTATCATTCTTTTCATATGCCTTTTTTGTCTGAATTATTTGTTTGAAAGCATCTATATTAGATttgtatgattttaaaacatatctTGAGTTGGTTATTAAGTCAATGCTATCAAAATTGCTTTATTACAGTGTCAAAAATTTAGAAgtcaattatttcttttctcttttcttatatacagatattttaaattcttcatctttGAAAGTTCTCCTTTTCT-----CAAAGAACCTGTTAG-AAAAATAG----TCAATAAATAAG----TCAATCAATACAGAGCTATGAACTTAATGTCATAATGACAAGAGGATTACTATCTATAAAATGTTCTTTGTGAAATTATGCAATCAGAGGATACAGAAAGAACATGATGC-ATGTGCTCTAAATGACCTGTttacaaaataaatcttcccACTAAACATAAAAAATTAGATACAAGGGTTCC-----------------TATAAATATCATTTATGATGTTCAAA---CAACTTAGTTCACTAGTACTGCACACTTATTTTGTGTTGTGTACTGTATTTGTTAATCAGTTGTAGGAATATAAAGTTGAATGACACATGCTTTCTTCCTTCAAGGATATTACTC-CATCACGTTCAATGTGGAGTCCGGAGTTGTAGGAGCTTGAGGGGAAGAAGTCAGCTTAACCTGGAAGATAAAGATGCAGTGGAGAACAACATGGTCATAGGAGTGGAGAGAAAAGGGTAGAGGGAG

a score=30361
s chr3           153839999 2678 + 160039680 TGATCTCCCGCAGAGACACCCATTGATTTCCACTGCAGGTTATTTTGCCCAGTGGCATTAATTCCTTT-GACTACACGACCAGCAATTCAAAAACAAGAGAGTTCAAATTAATAATGTTTTACTGTG----GTCTTCAGAGTCCTTTA--GTCGGAGGCGCCTTTGCCTCAGCTAA----TTTGTAATGGAAATGAAAGAACCTGAAAAGTCAAAAGTTATATCCTGACCTGGTAAATTAACTTCATTTAAATCACTCTGACTACAGGAAAGAGCAGACCTTCTTGCTTTGAGGGCAAAAAGAATCACAATTTGAAATGTCATTTGCCTGGGCTAGGCCTATCACATTGAGTGGTATTTAAAGATTGCATCAAGATAGCTTCACACTGAAGTATAATGGGAAAGTCTGCACTGGGA---------------------AGGGGAGGAGCTTTAATGCTACTCACTG--GGAAATAGTTCCAGGGTCAGGACCAGTCCAC-AACTTTAC-TTTATGAAACAGCTTTTCCCTGGAGCATTAA--AACCTAAAAAGTTTTCCAACGACTAATATAACACTTTTTATGTAAAAACAGGGT-GATGTGATTAGAAAATGGGAATTTAAAAATATTTGATTATCGTG-------GCTGGCAATGAT---GATTTGGGGTTAATAATTATCTAA---AAGAGGCAAGATAAAAG--CTTTGGGGCTTAAAAATATAAAGTGTGCTAACAAGCAAGGGCACGCAGAAAAAAGTCAT-TTTTCAAAGAG-------TTCTCTCA--CACTTCGGGTAGGTCCAGCTAAAATTCTCTGGCCAGGTCAATCACGCCTTCTTGTCATACACTAC-----------------------------CAAGGCAAG------------------------------------------------GCCATGCCCTCTGGAGACTggtgagc-tctaggttcatgaagaga--gaccctgcatca---------------aaaaataagg-----tagaa--------------------------agtgatag--------------------------------------------------------------------------aaacagacactgga---------------------tgtcaacctctggctgccacat-----------atatgcacaGGCAAGTAAGTACACACATGCATCCATACACACTTCTACCACACACGGGCATATACacag------------------------------acagacagacagacagacagacagacagacaca---tagagagaGAACAAAAAT------CATTATAGTCTATAAT----------ATGCCCAACTGAAAACATATAACACTAAATA--TTTTTATTAAACTAAGCTA-AAGGATAATAAAGGG-GGGAAAGCTAGCAGCTGAGAAGCTATTAAAAGCTAATACTAATTGTAAAAAGTAA-----TATTAGGAAGGTCAGAAATCAAAACACTAGTGAAAAAAGACAATGGTTTGGTTTATTTTAATGCTC-------TGGCTTAACTAGTCTCTTTCCAG---------------TGTCTTCTATGTCAAGAAACA-CCCCACTCTCTTCTTTTGAAATGGTATCT--------GTTGGAGATGTTGGCAGGAAGGTAATTTCTTTAGAGAGACTTCGCCGGTGCTCATTCCAGTCTGCCCTACTTTGTGTATGCTTCTGTAACATCCCAGA---ACAGCACTTTATGTGCTCATTATCTGCCTCGTTCATTAGTTT-----------------------ATAGTCTTGTTGCCACTA---------------------------GTGGAGATCA---GCTTGAACCAAACTAGATATATAAAGTTAATACAGAAAGAAATCCTGGGCCAGTGA-----AATGGCTTAGAGGGTAAAGTG----------CTCCCCACAT----AAATAAATA-------AATGTGGTAATAATACAAAAGATATCTCAACAAACTCTTCTCATTTTTAACAGCAGTAAAACTGAGTGGAATTCTGTCAGCTATGGGACAATATTCAAAGCATGGTGTCCTGggagctagaggg------------------gagggctctgcagttaagagcaccagctgttcttccaaaggcattggttcaattcct---agcactcacatgatgcttacaaccatctgtaaacacagttccaggggatctgaggtcctcttctagtct--ccttggtgaccagacatgcacccgatatacattcaggcaaaacaccaatatgagtaaagcaaa--gagaaaTG-------------AATGGGATTTGTATC----ATCACAGAAGAGTGGGGAATTTAAGACATGCAGTCCCATC---ATCTC------CTGTCAGTGGGCCACTGGGTAAAAGGTCACCTGATGAAATCAATACAGACAAACAAAGATATTGGCTGAATTTAATACATGTGCCTGATGCGCATGCTTGATT-----AAGCAGGCCTGGCTAAGATCACACTTAAAAAGGAAACGGCAGTAGCAGAGGTCAGCATATAGAGCCTTCCGTCCTCACCACTCTCCATCCACAGGCAGTGGCTACCTGAGGCACCAAGTGGAGGA-CCTAAAGCTTCCTCCAAGTCAGCAGGAGACAAGTC--------------GCCGTGTG-CCCTGGAGGAGGAACAGGACTTCTTTGGCCATT--GATGTTTCTTTGGAAagataaaggcaaagtaaggaatgttctagcaatggctgtttaacactgccttgaaatttctacccag-----taagcaaggcaggaac---------cagaagtggatataaatcttccctgacc-------tcaaaatgccaaaattatttttattttcagatgacactgtttctggggaagatgcaaaagaagaaactagaaaagaa---tatggttaataagaaagcctagtaagatttctggtaattaaatccatacaaagaattcaagtattttttaacatttcaacagtgaacagctag---atatatgatggaaaaattccattccaactatttactaaccatataaagtacatagaaacaaacaaatgtatggagaaatgtatcaaggttgttgatgaaggaaatcatggaaACTCT
s HiC_scaffold_1 140703394 3072 + 233722169 TAATCTCCATCAAGAACTCTTACTGATTCCAATTGCAAATTATTTTGTCCAATGACAGCAGTTCCTTCAGCCTGTATGATCAGGTATTCAAAAACAAGAGAGTTCAAATTAATAATGTTTTACTCTActctttcttcaatttcttttatagtcagttgctcttttttccccACCAAATGATTTGTAATGCAAATGAAAAAATCTGAGAAGTCACGAGTTAGATTCTGACCTCTTAAATTAACTTCATTTAAACAGCTCTAACTACAGGAAAGAGCAGACCTTCTTGCTTTTGGGGTGAAAAGAATCACAATTTGAAATGTCAGTTGCCTGAGGCAAACACATCACACTGAGTTGTATTTAAAGATAGCTCAAAGCTAGCTTCACACAGAATTATAATGGGAAAG---GCACTGAAATCATCTCTTTTCATCTGTAGTAGAAATGGAATGTTAGTATTTCTTAATATTAGAAACAATTCATGGGTCTATAACAGTCCACTAATTTTACATCCACGTAACAGTTTTTCT---GTGTATGAAACAACCTGTAAAATTACCCAATTACTGATATAAA----CTGGCATAATAACAGTGTAAATGTAACTGAATGATAAAATAGAGGAGAAATTAATTTAGCATGTATTTTCATTGGCAGTGATTAAAATTTGTAGTTAATACTTATTTAAGGGGGGAGGTAAGACCAAAGGtttttgaagtttaaaattacaaatcaggaaaataagccat----ctcagaaaaaatatatagttttaaagagaaatagCTTTTTCCAGCTACTTTAGGTAGATTTAG-TGCCTTTCCCTGGTTAGGCTAGTGACATCTTCTCATGGTACATCCCATTCTAAAATATGGCACCAAAAAGATGGttaagggaagaaggaaagccaCTCACTTCTCCTCTGCGTGGGACAGACACCACCATCTGCCATCTTCTCT--AAATTGGTAGGTGTCTTGCTGTGTGCACAGAAGGAATGAGTATCACACTGGGACCCCAGGAAGAATATGGACACCCAGAACTTGCTAAGTTGCTCTTCAGTTTATCAGTACTAGACCTTACTGTTTTGTCCTCCAGTCACTTCCTAATACAATCGATTTCCCTGATTCTTTGACTCTTCATTtccataaaatttatattaaagaaaTGCGTATGATTTTCTCTTGTTACCCTTTTGTGGCAGGATTCTCAGTCATGAATTGTGCAATGGGGTAAGGAAAGACA-------GTACTAATTTTTCTCCTACA---ACACATATATGGCCTTAAATTATTTGCTAAATCTTTCTTATTCCAAAAAGGAAATCAAGATGACAAGTAGAGATAatttaga-aaagaacaaaaatatatcaaGTTAAAAGTTATAATTAACTAAATGACACTCAAAGGAGAAAGTATAACCCCACATATTTTTTTATGAAACTGAACCATAAAGATAATCAAGGACAGAAAAATTAGCACTCAGGAAGGTATTAAAAATTAa-------ggtaaaaagtaaaacattgttagtaaaatcagaaatcaaagtatgattgaaataaaacagaaaatttttttaTGCTCCTGACCCTTTTTATGGTTTCCTTTTTCTGCCTCAAggtattttcataaatatattttcaatgtgGAAAATTATTCCTATTTCCTTTCGTCTAAATTATATTTCCTCACTCTTTAGAAATCTTGgtttaaa--catttgttttagaGGTGC--CATTGATACTCATTTGAGTTAACTCT------TGTGTTTTTCCCTAATACACTGCATTCACAGTGCTTTA---ACTTTTTCACAGCCT-GACAATAAGCTCCACAgggcaagaaacacatctgaataATTCT----CCACTATCCCTCTCCTGCCTGTCTGAGGACTCTGTGAATAACAGGGGATTGGATC--------TGTATTGAATCAATGCAGA---------TGAACCAATGAACGGCAGTAGTCTTGGGAGCAAATAGACAGATCTGAatccacaaattaaaaaaaaaatacacaaagaatgGGAAAAGGATACACCAGGTGT-TAAGtagattttctatatttcttatgG----GTAACCTAacgtaattattttttaaatctcactaACATCA----ATAATTTCCTGGAAGTGTgcaagtaataaaaataacataaaaataacccAACAACCAGAAAGACTAAAGTTTTTCAGTATAATacttataaaatttctttaaactttcaaatga----------------taaacataattttataaaa---------ctagCATAATTTAACTTTGTAAACTAGATA------CGATAAATATGATACAAAAAAATCTTACTAATTCAAGCTCATTTATCAATGTTGCGAGGCTTTCAGTGAAGCTTTTCTCAGGAATTTAAAGAGGGTGAGAGATTTAGGA-----AGGCCTAAAGAGATTTTAGGAAGTTTTTAGGAggtcaaaggggaaaaaatcatgtgatgaaaaccat--agatctagaaaaattttAATCTAATTTA--GCCTATTGCTGTTCAAAAGATTTGATTAGTTCAAATAGG------GAAGCTCACACTTCATAGATGAGAGAAAGATG-AGAGGCTGTCATAGAAGGTCCTT--TCCTTGCCACATT-----------CAGTTG--ACCTGAAGAACTATATGAAGAATTCTTAAACTTCAT--GGCTcagcagaaaacagcacaaagaTCAAATTCTGCCATGGGATTCTGTGAGAGGAAGATGTCTTGCT--GCCATGCAGACGTTGCCTC-taagggcaggaagaaagcaagaaatgtCCT---------TATTTAACACTGACTTGGAATTTGTAGCCAGTATAATAAACAAGGCAGGAAATGTGATCTGTACAAGTGAATCAATGTGCTCTGTAACTATtgtaaacaaagaatgaaaagtatttttattttcagatgatatcATTTTCAgctaa-acatgaaagaa-aaactgaaaaagaaaagtaaaactattAAGAGAGC--AGTAAGAATTGTAGAAAtcaaatacatacaca-aatacatgTATTCCT--ATAGTCCTATATTAAATTACCAGTTAAAACAGGGTGGAAAAa-tccatttc------tgaaaaaaatcataaaattcctAGGGATAAGCa----tattattaaatgtattaaggatctaaatgaagaaaa-cattgaAACTTT

a score=4382
s chr3           153842891 150 + 160039680 CTGATCTGAAAGGGAGACTTAAATAATTGAATGTCCATCTTAAGTTTCTAGATAGAAACACTCAACATTTAAACATCTTTCAAAA------------GATATTAGTTCATACATCAAGTATGGTTATAGATGAATATG---AAGATTCATCATGATATAAAAGTA
s HiC_scaffold_1 140706467 163 + 233722169 CTGACTTTACAAGGAGACTTAACTAAGTGAAAGCCCAGCTCAAAATTCTAGATGGAAAGATAAAATATCTAAACGTCGCTAGAAATTTTATCCTCTCTGTCTTATTTCATGCTCCAAGCA--GTTTCAGTCAAGCATGGGAGAATTTGACcatgacataaaaaca

a score=27542
s chr3           153844089 657 + 160039680 GCTCTCCTGCATGCCATTGCTATCCTTTAGGTTTTTC--ATATGTCACCAACTTCACAACCGCCTCAGGTTTCTGACCCGGGCTGATGACGGCTCTGCAGGTATTGTGATGTCACCC------------TGCTGCCTTCCCTCTGGCTGA-------------TGAGGGGCACGCCTGCGTCTG-GAGTAGAGCCTCCCACATTATC-AAGGCCTGTGACTGAGGAATGGCAGCATGACTGCCCACCGTGCTCTTCCTACC------CTTAAGAAGCAATGAATAACTCTTCTAAATTATGCCGGAAGACGTCTTTTCCAAGAAGCAATATATTCTGTAACCTTGTTGACAAGATAGTTAAGCGGCCCTCTCTGCAGTTTCTGGGCCAATGGGGATACCACTGCTATGAACCCAGGATTTACAGAACCCTGGCAAAAATCCTGAGGTATGTTGACTTGGACGGCTTTGACATACTCCTCACGGACTATATTGCTTTTGTGGAAAAGTCAGGACACCGTTTTGAACTCAACTTTAACCTTGAGTTTACTGAAATATGCGTGAATACCATTCTGTACTGGGTTTTCGCCAGGAAAGGTAATCCTGACTTCGTGGAACTGCTTCTCAAGAAGACGAAGGACTATGTCCAAGACAGAAGCTGCAGCCTGGCGCTGATATGGAGGTAA---TCTCATGCT
s HiC_scaffold_1 140721974 674 + 233722169 GCTGTCCCAAAGGCCATTTCTGTCCTGTATGTCTCTCTCAAATGTCACCAGTTATATACCAA------------AACCCAAGCTGATGACTAAACTGCATCTATTGTTATGTCATCCAGAACTTTATGATAATGTTTCATGTCAGACTTTGTAGGCTACAGTTTAAAGGGCAC---TTTGTTTGAGAGTAAAGCCTACCATGTtatctaaaaaatgaaactgaaggatTACTACACAACTacctgtgattttatttattgctgATGCCTTAAGAAGCCATGAGTAAACACTTCAAATTATGTCATAAGACTTCTTAT------GACAACTTGTTCTGCCATctcattgaaaaaattattaagaaaccCTCCTTGCAATTTTTGGGTCAGTGGGGATACCACTGTTACGAACCTAGGATTTACAGAACACTGGCAAAAATCCTGAGGTCGATCGACTTGAATGGCTTTGACTTGCTTCTTGCAGATTATATTGCATTTGTGGAAAAATCAAGATACTGTTTTGAACAAAGTTTTTATCACGAATTTACTGAAATATGTGTGAATACGATTTTGTACTGGGTTTTTGTCAGAAAAGGTAATCCTGATTTTGTGGAACTGATTCTCAAGAAGACAAATGACTATCTTCCAGACAAAGATTATCACCTGGCTCTGATATGGAGGTAATACTCTtatact

a score=30024
s chr3           153847028 1592 + 160039680 Atcagttttggacataacagtttgagctgcccagggaatattcatgta---------gagatgtgcagctagacaCATAGTGCCATCTTTGAAGTCTTTGTTTCTACATCTAATCGGTTATGACACCTGT-----TGGTTCTGTCTACCTGCAAGCAGTGACAAATATGGGCGCCTGCACTGACCTAACCTTGTCCTACAATAAGCAGCAGCATCTCCCCCCCCCC------CCCCCACTGTGAGATTAACAAAGCCTTGCTGCTCCTACAATC-CAGGTCTTGTGCATATCCATTCCATTTGAAGCCAAAGA-------CTTTCTCTAGCAGCATGTGAGGCTCCTCACAACGTGGCTTGCTGTCTCCCCTGGCCT------------------CAGCTTTATCCTTTGATCAACACTGACGCCCTTACTCTTC---CTTCCAGGAACCCACACAGTGATATAGT---TAAGTGTGTTCTCCCAGCCTCTGTGCAGATGTAACCTTTCTGTAATGTCCTGTCACACC---------GCTCCTACATCTT------CGGTATGCCTGCTCTACTTACTCTATTCTACTTTATCTTTGCTGCAGGGTTTATCTCCGTCACTATCTTCTTCAGTGATAGAGGCTTGCTGG----CTGTGCTGGTCCTG-ACTTGT-CAGTAACTGAC------------------------------ATAACATTAAGAAAGACAGCCAAGGGTTT-TATTTCGTTCACCAATACA-----AGTACCTAAAACTGTAGCTATCACTTTGCACGTATTCAATATTTGTTGAAATAAATGAAGAACAGTTGAAATTACAGTTATGGATGAAATTACATCAGAATGACCAAGTCAGAATTGGTCAATATGGCTAACACACCTTGTTAGACACCGGGGCCATGAAAGGGACAGGAGG-GACCTGTGACTGGACTGACCAGGAA------------------------ACGAACC-----------------------------------TTCAACAAACTACACTATGTTAAACAC--CAGAGATTGTACTATTATAAA------------------------CAACAAAAAAAGGAGAATCTAGAAAAAATTAGAAATCCGTGTATCTACAAAGCAAAGTCATCC-TCTATGTGTCTGTACAGAAATATTATGCCTCATTTCGTAAGCATGTGTGACAAGCTTTCAGACACAGAGGGCTCAGTTCATTAACCTCACATTTAAAAACC-AGTCCTGGCTTTGCCTGCCTCACTCCATCCACGTGAGCACTGCTATAATTAACTGTCAGGGCAGATTAAGCAGAGTTTGTTTTACAGTTCCATACTCTTTAAACCCCAGGATTAATCACACACATCATATGGATACAGATTAGATGTTTAAATCTCATTTTAAACCTATTTGAGTTTTAGTCATGTTTTCAACACTTTTCAATATTCATTAAATATCTCCTAGATAGTAA------------ATGTTAATACACTGGGGCCTACTGAATCTTAACAATGGCCA--------CTTGCTCTGTCCTAAGATTCCTGCGTTCCCTTACGTGGAAGGAAAAGTCACATGCTTTCTTAAGAACTAGCAAGATAAAAAGAATTGCATTGCCTCCTAAAGGTTTAAATAAGTATAAAGTGCCAAAAATCTTATTAGGATTGAAATCAAATTCAA--TAAAAAGCATGTGATTGACCCCCTAC---AGATTCAGTATTA---TAGACTCTCATAGATACATTTGTTGAGTGAAAACCACAGTTACTTCCCTT
s HiC_scaffold_1 140727776 1712 + 233722169 ATTAGTTTCAGACAGATGAGTTTGCATTGCCTAAGAATTATCCAAGTACCCATGACTAAAATAGGGGGGTAGATATACAGTGGCATTCCTAAAAT----GCTTTTGCAATAAATCCGAGAT--CATCTACAATACTGGTTCT------------------ACGGACATAGCCAATTCCACTGCTGTCACCCAGTTCCAAGCTGAatagtttcttttcctgtttcacaGCAAACCCTCAACAAAGGACAGGTCACACTACACTTTTACCAAAAGCGCCAGTCTT---------TATCCCATCTAGAGTAAAAGGTGATATCCTTACACTG--ATCCCTGAAGACTCCTC-TGATGTGCTGTCCCGCCTCCTCTGGCTCATTCCTACTGCTCCCCACCCGCCTCACCCTCTCAGCCACAC-GGCCCCCTTATCCTGCAGCCCTCCAGGAACATCCTCTTGCCTTCAGTCTTTGTGTCTCTCCTTCTAGTCTTTGTCCATGTGTCACCTTTCAGTAACACGCTCTCCTCCTTAGTGAAAAACGCCTTCATCTCACCTCCCAGCACACCCA---TACTTAccctgcttt---ctctgttttccacaGCACTTATCACCTGCA--ACCTAC----------AAAACTCCCTGGTTTGCTGTGTTCGTCCTTCATATGTACAATATTTGACTATATATTACTTATATAGGCATCTCTCACTATAACAC-AAGCCAGATGACAAAGGCTTTCTATTTTATTCACTGATATGTCCTGAGTATTTAAAACAGTGCCTGGCATGCATTAAGTATTCAATagtttgtaaaataaatgaaaga-agttGGAGTTATGATTATGTGTGAAACTGtatgagaaaaatca-gtca---------aata---cAAACATGCATATTTAGGTGTTCAGAGCAGGAGAG----AGGAGGCTGTCTGGGA--GGACTGAGCAGCAACAACCGAACAATAACAGATCACAGGCGAACGGAAAGATTGGCCTAAAGAGTAAAGGGAAAACATAGCTCAAGAAAATCTACTATGCTAAACATTTCAGAGAAAA-ACTGTTATAGAGAAGCATCCTTTAAAGTTGTTAGCTAAAAACCAAAGGAGAAtgcataaaaaattcaaaataactatAGCTTCAAAAGTGAATCATCCCTCTGCATGTCTATGTGGAAATATTATGCCCTGTTGCATAAGTGCACAAGACAGGCTTTCAGATACAGAGGGGTCAGCTCATTAACCCCACATTTAAAAACTGATTCTTTGCTTTGCTTGCCTCACTCCATCCATATAAGTACTGTTATAATTAACTGTCAGTACAGATTAGGCAAGTTTTAGTTTATGG-ACTATACTCTTT-AACATGGGTATTAAT--CATATGTCATGTTGATACagatt--acttttaaatttcattttaaacctACTTGAGTTTTAGCCatgttttaaacatttctcaGTATTCATTCAATATCTTTTAAA-GGTAATGTCAATTTAATATATTGAATCACTGGTGTCT-CTAAATCTTAACAATGACTATGGTATATCTTGTTC---CCTAAATTTCCTGAATCCCCATAATTATAAG------------GCTAGCTTGAGAACTAGAAAGGCCAACAT-GTTACATTGATTTTGAAAAGATTAAATGGCTGCGTATCACCAAAAATCTTGCTAGAACTGAAACCAAATTCTAGTTAACAAATATGTATGTGAGTGCCTACTGTGGACTCAGCATTGTTCTAGGCATGCAGAAATTCAGTAGTAAAAGGCAAA----ATTTATTGCTCTT

a score=41556
s chr3           153849956 3695 + 160039680 [encoded data, 4213 characters]
s HiC_scaffold_1 140733294 3662 + 233722169 [encoded data, 4213 characters]

a score=28273
s chr3           153856952 1954 + 160039680 TCCAGGACCACTTGCTGCATTGTAAAGTGCTTATCT----------CCACATTTAGGGATGCACTGACTAACAAGTTTTCTTTGATTCCCAGCACCATTATATTGAATTCAGAGTCATTCATGGTCAGAATTTGGAGATACCAAGTTGAGATGTGGTTAAATCATAGAGCATT---ATGTCAGAATAGAATGCAAA-------------------TGCTTAAAAGAACC--------------TTTTCAGACCTATTCTTTATTATATATTTTTAAGCTAGAATACTTCTGTTAACCTTCTAAACATACACTTAATAGCAAACT---ACAAACTTAGTCTGACTTCACA-----GTGAATACTGTATTAT-------TTTTCTAACA---AAAACTTTTATTTAAAAATTTGTCCCTTTTGAAGCTATTCCAATGAATATTTTCCATCTAGAATTCATAGTAGGTGACCATTCTGAGGTTAATATACTATAATTTTTAATTAAAACATAAAGCTGAGCAACTA----------------------------------------------AGTTGCAACCCCTGTGC-ACACCGTGT-ACTGGTCACTCCTCAGTCTTCTCTGGAAGGCCCACAGCCCTGGGAAAGTCCCCTGCATATTTCTTCTTGAGGTTACTCAGGTATGTCCGTAACCTGTCTGGCTCCAACTGAGAGTTTCGGGCGGCCTGGACAAGCCTTGTGGCAAGATGGTACACAGCTCTCTGTCTATCCATCTCAGGGGAACTCCTTTGATTTTGCTGTTATCaaa-----atatgaaattaaaatttaaatgc----atatttaattt----atattttGGTATTATTTTATCTTGTTTCATAGAAATA--GGAACTCAAGGTCTCATA-------------------------------------------------------------------------------CACACTT----------------------TAAAGCATG---------------------CTATCCTGGA---------------------------------------------------------------------------------------------GAATTAAATTTCTCATG-AACATTTACTACTTTATGAA--AGTCTCATATCCTTGCAAATGAC--ATTTAAAGAAGAAATCCTGTTACTCAGTCAAATTTATAAACAAAATACCAAAAAGTAACAGAAAACTCAGCAGAGAGATGAGTCTGCAAACATATTTGTTTT------AAAGGCA--GGGACTAACACTGTTCACTGCTATGCAGTGA-CACAGTTGTAAATGTCACCCAGGGATAAGATGAGA--------CATCAGAAAGCCAC------CTGCCGAAGA--------ATACAAC----AACCATTGTAGCCTAAAAGAAAATATTGCCTA---------------TTTAAAAATAAACATCA-ATGGAGATCTATAATTATGGCTGGT---TCTTAACTATACTTAGTAATATC-aaaaaataatatataaaatataGTCCAATAAGACTTAAA---GATTGGAC----AAGAAGCTAGATTTTTT--------------TAACTTCCAATTTACATCTCTGACTGAACTAGATAAAGAAATCAACAACTACAACCCTAATAACTTA--GAAAGACTTAGTAAGTTTCCCAGAAGTATTATCTCTTAAACTCTTTCTTGGTGGTAGACAATCCTCTCTGTAAATATATTTTCCCTTTTTCCACCACAGTAAAAA-GAATAAAATTCAATACGACAATAATAAGATAGTCATATGTTTAGTC-------ATCCATTTGGTGCCTTAATTAACT---------ATTCTTATTTATATAAAAGTTACTGGGTGTGTTTCAGGCACCAAAGCTG----TTTCTGCACCTTTATAGGGCACCATCATGTACAGCTAACGTGATAACGGACCTCAAGCAGCTTTGTACACTCAGTGCACACGGCCTG-CTATATGCACTTGACTGTGGTAGTTAAGGGAAGGTCTGTAAGAGGGA---GGGATGCACAGTTCTCAGAGAAGGCACGCTCACTGCCAGCACAGACCAGGA-ATGCTTACAGATGACAGAGAATCTAGAGCCAGTCTTGACTGATAGAAGTGCCCAAAGTGGAGG-GTTCTGGGTAGACA--------------------AAGAGCTAAAGTAGAGACC-TGGAACACAATCAGG----------GAGATGAC----------ACGCGACAGAGATGCAAATTATGTGAAACTGACGTAGGGTCAGGGTGGCGTAAGCAAAGGAAAGGAGGCTCTAAAGCAAAACTGGGCAGAAGGGAAAAATCTGTGAGCCACCAGAGACTGGGGA
s HiC_scaffold_1 140748666 2353 + 233722169 TCTAGAATTACTGTCTGCATTATAAAAtacctattttttttattttcagcctttagaaatatattgaata-taaattatttttaatgctcAGTGTATTCTAACACACTTTAAAATCATTCAGTGTTAGAATTTGGAG---------TAATAGATTTTTAAGTCATAGCATATTCTTACTTCAgaagaacatataaaacacacagatacacacgCATTCACAAAGACACCACATCTCAACTAAGTTTCCAGCCTTAA-----AAGAAAGGTATTGAAACTAAGGTATATATAATAACATGTTAAAGTATAACTT----GTAAGTTCAAATAAACTCAAtgtgaattttcataaatgagaaaaatgtggtacatcatacttttttaaaatgaaagatatttatttaaatagttcTCTTTTATTAAGA----ATAACAAACAT----CATGTAggatatataa---atgaaaatactga-----------TATAATTTtcaattgaaatataaaatttagaaaatattttcttttgctctcaGGAGATAAATTCTAGATTCCTCATATTAAAAGATATTATTTCAATGCTATAATATGTGAATTATTATTCTTCAGCATTTCCTGGAACTTGCGCAACCCTGGATAAATCTTCTTCATATTTCTTCTTGAGATTACTCAAATACATTCGTAAACTGTCTGGATCCAATTGAGAGTTTCGAGCAGTTTGAATAAGTCTAGTTGCTAGATGGTACACAACTCTCTGTCTTTCCATTTCAGGGGTACTCCTTTGGTTCTgctattattaaaaatacataaaaattaaaaaaataaatactatgatTTTTAAGTTGATCATAGTTTAGCACTATTCTATTTCCTTTTATAGAAATATGGGACTTCAAGATTAAATAATACTCTTAGATAAATCAGCTCAATTCAACTAGCAAAAAATACATGGTAAGACTAAAGaaacagccagctgtggtggggtacacctgtaatctctgcatTCAGGAGGCTGGAGCAAGAGGGTGaccgtgagttcaagactagcctggggtacacagtgaccGGAAGGCAACGCTAAactacactgtgagaccctgcaaccaaaaaaaaaaaaaaaaaacaagaaagaaatagtaTTTGGATGAATAAAATTCCTCATATAACTCTTACTACTTTATGACATAGTTTAATACTTTTGAGAATCACTTATTTGTGAAAAAAATCCACTAAAAAGATCAAATCCCTCAACATAGTACCAAAAAGTAATA-----------ATACAGATAAGT-TCTAAAAATACCTCTTTCATTAAAAAAGGTATGGGAAACAGCACAGCTTGTGCCTACACAGTGAGCATAATTTTAAATGTCACCCAAGGATGATACCATGTTATCTTCCATTTTAATTTCTCATCATGCTTCTAAAGAGAATTTATATATAACAATTAATTATTGGAGGCT--AAGAGAACACTGCCTGAAGgacaaagtacattttaaaaataaacaacataaataGCTTTTTGAAAGTAGCCTTCTAATCTAAAATGTACTTAAGCATACCTATGCGATAATATTTAAAACAGGGATGTTGAAGACCTTTAGTTGTTTGGTCCTTGAAGAAGTATCATGATTTGGAATACAGGTGAAGAATTTTTAATTCATACCTTTGTCTGAgctacacagaaaataaaatgttttcaaccTTCACTGTTTATGGAATGTCTTAGTgaattttccagaaataaaatcCCTTCAACTATTTGTCAATAACAAGcaattc------tgaatatttttctacttt---cacTATAGGAAAAATGAGTAAGATTTCATTAGGTAG-AACAAGATTATCACATATTCACCCTTCATCGAtctatttgatatatttatcaatTACCAATTAAACCATTATTTCAATTACACCTC-------TGTGCTGGGCCCCAAAGCTTGTGCTTTTTGTGTCTATAGAAGGGAGAAAACTGTATACTTGACATAATAACAGAACCCAAGGAGCTTACAGTCTTCTGCTGAAATGGCTTGTTTATACACAGTTGACCACAGTATTTACGAAAAGTCCCATAAGAGAGATACAAAATGCAGAG--------GAAGGGACTCTCATTTCCAGCTCAGATCAAGACAGGGTTACATAAAATGGAGTATGCTGAATGAA-CCTGATGGATAGAAGAGTCTAGAAGGAAGGTATTctggataggaaaaaaaaaaaaaaaaaactagaagaggCACATTAGAGACCATGGTACATAATCAGGTTGAAATAATGAAATGGCAAGTAATTAAACATGACAGAAATGTAAATTATGCAAAATTTAAGTGATGTGATGAAAG----ATTGATGTGATAATGATCTTTAAGCAAA---------AAGTAACAAACTTTAGAGTCAGCTGAGAATTGGGA

a score=7433
s chr3           153860880 107 + 160039680 TTTTTACCAAAATTTGCCTTGTAATTTGTGTTGTGATGTCTCTGGCATCCAAGACAATCGATGACGGAAGTGAGGAGGCCTCTGCAGCTTTTAATCCTAAAATTACA
s HiC_scaffold_1 140753454 107 + 233722169 tttttaccAGAATCTGTCCTGTAATTTGAGTTGAGATTTCTTTGGCATCCACGACAATTGATGGTGGAAGTGATGACACTTCTGCAGCTTTTAATCCtagaattaca

a score=18903
s chr3           153863301 927 + 160039680 TGTTTTGAGGTCTACGTTTAAATTCTATATGCAGTACCATAGTTCTTTTCTTCTGTGAGTCCCCTGGAAAGTTTGTAAGTATACAAAATTGCATCTTTATTTCTTGAGGTATTCTTCACATGCTGAACTTCAAAATGCATGTTTTCTACATTAAGATACAGGGCATCTAGATGGCATAGTTCCAGGAAATGGGTAGTGAAGAGTGTAAATGCCTACAACACATAACAAACAATGAGTGTGAGTAC-TTTTAAATGATCTAGAAAA------CTCAATTATTTAAACATAACACATTAATTAGCTTACCTTTCCAACTAGCTTGACAAAGAC--AGGAGTAAAACCAGTATCTCAGAGATGGACATGTTCAGGTCA---TGGGTTTTGAAGTTTAT------ATCCAATGTGCATGTGTCAACTCTGTTTGCACTTGCACAATGTGTTATGTGAAAGAGACTgtcaggcatg-----gtagtgtatacctttaatcccagcactcaggaggcagaggcagacagatctctgtgagtttgaagctggtctggtctacatagaaagtccagga-cagacagggcta--cagagagaaaccatct-------ctcaaaaT-ACAAAGAAACAAACACTATGTTATGTGAAAGC----------GACTACATTCCACA--GTAAAGGGATAAAG---GTTACAGAGGTAAGGCTACTGAGAGAGGTGCTCACTTCTTAGGGAGGCACCACAGCTCTGCTGCCCACATCCTCACTGCATAGCTCAGCTGCCCACATCCTCACACACTTCCCTCTACACTGTA----CACACTTCACACGAAGTCTCCT------GCAAGGACTATCAGAACATGGAGTTAATGC----ATTATATTAGGCATTT-AAATTCTCAAAGGTTTTACTTTATGTTTGTTTTCT----------------CTTATTTTCTTTTTTG---GTGCCAGGAATTAAATCCAAGGAGAAATtccctgagcactt
s HiC_scaffold_1 140754658 936 + 233722169 TGCCTCAATATATAGGTTTAATTTCTGCATTCAGTACCataattcttttcttctgtaaGTCCTTTAGAAAGTTTATAGGTAtacagaattgcttctttatttcttgaGGTGTTCTTTACATGTTCAACTTCAAAATGCATATTCTCTACATTAGGATACAGGGCATCAATATGGCAAAGTTCCAGGAAATGTGTAGCAAACAGTGTAAATGCCTAAAATATATAAGACA-ATTGAATATTAGTGCTTTTTACATGAACTAAAAAATCCTACCTTAGCTATTTAGACCTAA----------AACTTAATTTTCCAACTAGCTTGGCAGAAACATAAGAATAAAACTA--AAGTTGAAGACTAATATGATCAATCTATTTTAGTTCTTGAACTTTTTGAGGGgaagtactgggaat---caaactcag---gaccttgcac--------------------ctggcaggcaggcgcttgtgctgttgagctatatccc--------------------cataccaatcaatgt-attttaaaacactcCAAAATTTCATATTCAATGAAGTAGCATATAATTATATTCAGTGAAGTACCATATAATTATGTTAAAAATGACACAGGAAAGAATAA------ATCTAAAAGTAAACCTTAAGAAATACATCTGAAGATATAAAAAGATGAAGTTTGTCACAAAAATAAAGCTATTAATTGAAGCAGTCATTTATTAGGGAAA----ATAatccatatacacacatataca-tatata---catacacatataatcttttatattttactcaactttttaaaatctcactttgaaaataatttctctcCCTATCAAACAGTTTTGGAAAGTGGAACCAATGTGTAGATTGTATTAGGTGCTTGAAATTCCCAAAGGGAATGGGtgatttctgtttgcttttcatcatttggttgcttatttatttacttggcagcactagggatcaaatccagggcaaACTTCACCGAACTTTT

a score=6933
s chr3           153864806 113 + 160039680 ACTGCCCCTAGAGGCATTTCAGGCT---CTGCTGTATCACATGGATGTCAGTAGGTGGCAGAGAGGAGAGAGGCTATGTCTATGCTCAGTGTTCTGACCTATGGACATCTGAAGGA
s HiC_scaffold_1 194511547 116 + 233722169 ACTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGA

a score=41169
s chr3           153865600 2975 + 160039680 tataaaatagtttt-tcatt----ataatGAATCATTGTGGACTCTTGTTTAAGATAAAAAAC-----CTTAAAGACATTTT----CATTTTAATTATGAAAATGTGCTTTTATATTTCTCATATCTGAGTATATTATAAAGTCATATATGAAATAATTTTCCAAATTAGCTTAATAACAGAGCAAAA-----TAATTTTTACAA--GATTTGTGGGAACCTGTTTTCTTTTGGGTG------TTTTGTTCTATGGTGCCTCAGAGATTATTACATGTAGAAACATGCTATCTTCAGATTGACAGATTTT-CTAAAACATGTAATATG--TAACATCTTCATATTTTGTTATTCAATTTGATTAAATTAAAACAAAGTGACTTTTGCATTATCTGTAAGTCTTA---------TTTACTCATCTATATCCTGTATGCACAACAGTAATTTTTTTTTCttttggtttttcgagacagggtttctctgtgtagccgtggctgtcctggaactcattctgtagaccaggctggcctcgaactcagaaatccgcctgtctctgcctcccgagtgctgggattaaaggcgtgcgccaccactgcccggcAACATTAATTATTTCTACTTTCACCAGAAATGAAACAAAAATTCCTGCAGTGTGCCTTTTTGCCCAAAACTGTATTAAGAACTAATTGTGGGTACTGAGACAATCCAATCATGTGAAGTGCA-TGAAACACAG--CATTTAGAATGAACACGG---CTTACCTTTATGCTAAGCAGGTGCTCACAGACAGCATAAGAAATTCCAATCCCTTCTTCTGTATTAGTGCCTCTGCCAAGCTCGTCAATTAATATGAGTGACTTGTCATTAGCATTATGGAGAATATATGCTATCTGGAAGACATAATTTTAATACTATTCATTATACCCAAGCAA-TGCTGTTCTCTTAGAAAAC---AAGTGAAATT--GGTCCCTTTATAAATATGTCTGAAATTTATTTTAATAGAGAAATCCTGCTGAGCAGAAAATAACACAGCGCTTCTCTTTCAGACAACCTCATAACTAATAATTCCATTCAAATGGCTCATATGTAAATACAGACATCTACATATGTCTGAGGCAA------CAAAGCAGCATTATCTACAACATGAA--------------------GCAGCACATCAGTAAACTAA-TGCTTAAATAAGACGCAAAGATGGCTGTTCTCTTCTCCACAAATTACCAATCACCATCACACAATGTGGAAAACCAATTCAAAATATATTTACTTCAAAACTTACATTTGC----------TAAAGACAGAAA-AAGATATTAAGAAAAATA----------------TGTTTGTTT----AACAAATTTAAATCCATGGCC------AACAAACAAGACTTAAATTGATAGAAATT---CTTTCCCTCTGGGCAATAGCAACCTCTTTCTCAAAATATAGAATTTCACTCAACTGTATTATAGTGAATTAGCTTTTTATGCAACAAGGGATCTATTTAAAAGATATACTTCctaggagataaaggcacacagctgtaatccagcactgagaaaggcagagacaggtggatctctgtgagtctgtggccagcctgggagggctatatacagtgatatacattctcaaaaataaataaaTTAAATAAAAGGCATGCCTTTATGTATCTAGACTACTGATAGAATCCCCACAGGCACTCTATACATACTAAGCAAATGTATAGGTT----------TCCTTTTGTTTGTTTAACCTCACTTTCTATGACACATCAGAAAAGAAACCTAAGTGCACAGTGACGCACACACCCTT-CCAAACACAGATGTTCCAAGTG--------------CTCGGCCTT-AGACACAGGCAGGGTTTGCTCAAATAAGAA--AAGGAAGGGTACACACTGT-------------------------TATGGGGAGG-----AAGCATCTCATTC--------TCCCTTGT----------------------------------------------------TTATATGGGCAAAA--ACAATGATGTTT-AAAGCTAAAGGACAATTGATTCT--ATGTAAAAACA---------------------------------------------GTCACTGCCTTCTGACAAGCCTGTCTGATATCCTATACAGAAACTCGAAAGCCCAC--------------GGCAG---------CTGCCTAGAGCTGTGTATTCTGTGAAGCATCAGCTTCCATTT-CACATAGGACACA--TTAGGGCGCTGTGTCTGACTGCCCTCTGGCTCTC---AGGAACTAAAGTGCACCAGCAAGTCTGAATGC---------------TAGGATCGTTAATAT--------------GCTTCTAATAAAAGGGAAGTATTGTTTCATTACCTCTTTCATTTCTTTCATAAACGTTGATGAGTTTGTTTCAATATCATCATCAGTACTGATTCTCGTAAAGATCTGTGCAGCAATCCTAAAGGAGGCGTATTCTGCTGGGACATAGGAGCCTGTGAAATACAA----GAAGCACGCCAA-----------------------------------------------------------------------------------------------GTGTTTTAGGAAGCCAGGTACCAACAGCA-CTGCGCTTCTCA-------------------------CACAGAATGCTGTAGGTGGAGTCACAGAGCGTGG-CCTGGCTCTCT-GCTCACTCCATAAGCTAGCACA------TAAACTC-----------CCTTTCTCACAGGGGAAGC--GAGTGCCTGTGGCACCTGCCATACAAGGTTGTGCAGAAACCCGACTGA-----TGCTCAGTCACATCAGAAAGAGAGAGGTCACTTTAACCTTCA-GGAAGGGTTAGCTTATACAGGCAATGAATAAATAAT----ACTCAAAAGAGAACAAAGACAT---------------------GCTTACGAAGCTCACAAATGAAATCTGAAAGAAATGTGCGAGGGTCAAGTTGATGAAA--ATCACTGTAAAACACAAACAAGTTTGT----------CTGTACAAACATGCAGAAATATGTCCAAAGCAGGACAATA--AAAACATGTAACCAAAGAAGGATGAGTTACATTT------CATGAGTCTATTGTTAT-------GCTACTGAGCT-----TTCTAAAATACCCCCCAATTGATAGCAGATCTGACTG-TTA----ACCCATTTTTCTATGTAATGTGACAT------TCTAACATCATTAGACAAAATA-AGCAA---TGTAGAATGGGAAATATACCTCACAGAGCCCTGTGTAGGTAAAA--GTGATATAATGGGAGGGAAAACACAGTGAAATTAGTCCTGGATCTAGGGAAAAAGAAAGA-TGGAGGACAG-GCCTG--TCTGAGGAATAAAGACTCACTGGAAGA
s HiC_scaffold_1 140758159 3191 + 233722169 tataaaatttttttctcattctatataATAAATTATCACAAACTCTT----AAGGCAAAGAACTCCATCTTACAGACATTTTAAGGtattttaaatatgagaaaatatctccatttttcacatatgtatgtattttgaatGATC-TAAAAAGACTGATTT-ACAAATTAGTTTAAAAGTAGAGcaaaaatcattgttttatatGACTGATTTgttaaaaactgttttctttaaaataatgaaattttatacTA-GGTATCCTAG-------TACAT-------TAAGTCATTTGTGACATCACAGACATTACTGCATAatgaaaagttattaaaatagtCAT--TTTGCTATTTAATTTGATTAAATTAAAACCAACCAATCTTTaccttatttgtatttcttgattttctcctttccttatcTATATCATGGGTTCATAC---TAATTATTCTTACCTTCAGTG---------------------------------------AGAATTCA---------------------------------------------------------------------------------------------------------------------AGTACTAAAACATAAATGTTAGACGG-----TTTTTACCTAAAGTTGTTTCAAAAGTTATTTTTGG----TG-------CCATACATTAGAAAAGGACTAAAACTTAATCCATTCAAAATAAATGGGGATGTTTACCTTTAAGTTCAGCAGATATTCACAAACAGCATAACAAATGCCAATGCCTTCTTCTGTATTAGTACCTCTGCCAAGTTCATCAATTAATATGAGTGATTTGTCATTAGCATTATGTAGAATATATGCtatctggaaaatataattttgctCTTATTCATTACAACCAAACAGCTGTCACTATTGtagaaaaaatgaagagaaactcAGTCTCTTTTATTAGTTTATCTGAAACGCATTTTAATAGAGAAATCCTGCTGAGCAGAAAATAACTCACTGCCTTTCTC----AAAATCTC-TTTCTAATAATTCCAAAAGAACAGAGGATATATGTAGAC--ATATGCACATGTATATGAGACAAAAAGAGTAAATAATCATTATCTAAATTATTGATGTTTtagatatagtaaaataaaacaaagcagtgactCAACTGTTTAAATAAACCACAAAGATGGTCATTTTCTTCTCTGCAAATGACTAATCACTATCATGGAATGCTCAAAGCCATTTCACAA---ATTCACTATCAGATTTACTACCACTCTATAGcaataaagaaggaaataaaatttagggGAAAGTATCCATGTCTTAGTAATTGCTTGCTTAccaaataaatttaaatctttaaCCACAAAGACTAAGTAAAAATTAAACTGATATAAATTCTCCTTCTTCCTTGAAAAATATTAACTCCTTTCTCAAAAGACAGAATTCTACCCA----CGTTATA-----------TTTAACACAATA----GTaactttaataaacattttacct----------------------TTCTCTAGGACTAAG--------------------CTCCTTGAA-----GGCTAGAATTG--------------------------CTTAAAAATGTA---------------------CCTCAAGCACCTAGCACATTGCTAT-ATTCCCACAGACACTTGACA-ATATTAAGTAATTATATAAATCATGTGACAAATAGTTTTACTTATCTCCTCTCAGTTT----------GCAGAAAATTA-------TTCATAGTGACCCAATAATTCTTATTTAATACAATTATCCCAAGAGTCATACTTAATTCCCTTAGTCTTCAAGCCTACTCAATGTTTTATGAGATCAGAAATAGGGAAAGATACATACTCTGGAATAGAAAGTGAAATTCTATGTGTGTGAGGAgggtactagggattaaattcacagccttgcccttgccaggcagatgcttatgccactgagctaaattcccagccctagaaaattaaaattctatggTAAAAATTACaaggatttttaaaagccttcgaacaattaacttttattttaaaaacaagcctAAGAGGAGCAATCCATACAATGCAAAATGGTACTGAATATATCATTGTCTTAGGAAAAGCCTTTTAAATATTCCATATA-AAACACATAAGCACACTTTTATCATTCAATAACAttagcttttcctttttaaaattatattttcag-aaaatattgacTATCATTTCCACCTAAGACAGAATTTAGGAAGCTGTCTTTGACTGCCCTCTGGCTCCCAGAAGGAGTATAAGCTCATCTGTAAATTTTAATATACAGATAGTTTCTTACAGGATAATTATCATTAacgtaaaatttaaatattaacgtaagaaaagttttgtttgggtacctctttcatttctttcataaatgtTGATGAATTTGTTTCAATATCATCATCAGTACTGATTCTGGTAAAAATCTGTTCAGCGATTCTAAAGGAAGAATATTCTGCTGGGACATAGGATCCTGTAAAATCAAAAGTCAAAGTACATTGAacaacgttttttttttttttttgtacttggaatcaaatttgggacctcacatttgccaggcagagactgtcccactgagctatagacccttaaatgttttttaaaaatacaagtattaACAATGTCTGCACTTCTTAGTTCATTTATCCAACTGTGAGGCTGGAAAGAACAATGGATGTGGAGTTAGAAAATTCGGTCCCAACTCTATCACATATTGCATAC-CTTGAACATTACTTTAAACTCTCTCAGTCTCGTCTCTGTCATTATTAAAGTAGGAATTGTTGTCCTACCTACTGCATGAAGTTATTTGGAAGCTCAAATAATATAGTACATGCTTACATC--------AGAGATTATTTTAAAtgtggtaaaaattttaaatgatatacttaattaataaacaattaaaatataataataaataataacattcaaaataaattttgaagggAACTCATAAAGTTTATAAATTCAATTTGAAGCAATGCTATTAATGCTCAACTGATAAAACTATGACAGAAAGATATATTAGAAACTGTTATTAAACTgttattaaaatatgcaaaaatat-ccaaaaacagaataaaagtaaaacttttaatcaaaagaaaaaaagataaaattttcacCCACAAGACAGTTTTTACCTGAAAAGCTCTTATGCTAATTAATCTAAAATATTCATCTTTTGAACACAAATCAATCTGATTAATGTATCTATCTCTCTACATAATGGGCTATAAAAGGCATATTATTgtcaaaaaatatatagtaaaacaGTTGAACAAGAGAAAAACATCACAAAATTCTGGATatataaaatgatgaaataacTGGAGCCAAAA-ACAGCCAGATCACACTGGGTTTT-----AAAACAAAGACTGAAGAATAGAGCCTAACGCTAAGGAACAAAAATTAGCaggaaaa

a score=26275
s chr3           153869528  937 + 160039680 CACAACTGGCAACCATGCAGTCAAGT-ATAACTTACCGATCTGGGCCATGATCTGACAAAGTGCAATCTGCTTTAAGTACGTGGACTTTCCGCTCATATTTGGTCCAGTAATGATTAGAACATTACTCCCTTCTGTAATGTAGGTATTGTTGGCGACAGGTTTCTCTGCAGATATTTTTTCAAGAATGGGATGCCATCCTTGTTTGATTGCTAAAGTGTCAGTAAACTCTGGTCGAACTGAAAAGAAGGGGAGGGG----TTAAAGCTGAATGTATTTATATTTAAATATATTGTGGTGTGCACATAGGGGCTGACATTAGTTATGTTATGA-ACCCAATTTGGGACAGTAAGTT------ACCACTCTACCCCAAACATATGCCTAAATTTCCCTTAATTGTAATGGTTATA-ACTCATTATTTTTA----ATTATTTTGGGA------GAATGTAGTTCCTTTTCACTGCCCTGGGTTCCAAAACAACTTATGAAACAT------CTGTAAATATTAAAAAGAACCATATGACTATTGATAATATCTTCAAAA--TAACCAGAGACTCCTCTAGATAAAGGGCTTACCTAGGAGGCCTACACACTGCTTCACAGCTAACGCGTGCTCAAAGCAAAGTGGAACTTAACCATGGAGCCAAAC---ATAAAAGTCATATTCTGTCCTACACCCTTGAA-----------------------------ATGGAGAAAGCCAAATACAAAGGTTCTGTTAGTTCATAAAG-------------AGATCTCTCTGGGTAGCATCTG-------------AAGG--------------------GGAAGCTACACTATTGCACACTGAGAAATGGACCACATGGGTAAACTTTAACACACTCATCACAGATTGAAGATGGTACAGAAAAGACCAAAAGTATCTTAAAAAC---TGTTGCAATTTCAAAATTTAGATATATT----TCTCAAAGTAAATATAGTAAGTTATTTAATAATTTACAAAACAACTATTAGACTAGCAAAC-CCTgagctgggg
s HiC_scaffold_1 140764909 1038 + 233722169 CAGAATTggtaactataaaataaaatcagaacttACCAATCTGGGCCATAATTTGACAAAGAGCAATCTGCTTTAAATATGTAGATTTCCCACTCATATTTGGCCCCGTTATGATCAAAAAATTACTGCCTTCAGTTATATAGGTATTGTTGGCAACTGGTTTTTCCACAGATATTTTTTCAAGAATGGGATGCCATCCCTGTTTGATTGCTAAAGTATCAGTAAACTCTGGCCGAACTGAAGAAAAACACAGGAGGTTTttaaagattaatatttttatacctaAAGA---TGTGGTATGCATAGCTGGGCATACATTAGTGATTTTATCAGGGTCAATTTGGGACAATAATATTAATGCATTATTTAATCCCAGATCACCACCC-AATCACCTTAAATTATAATGGATACATTCTAATCACTTTTACTGTATTCATTTCAGAGAAATTGAATTTAGCTCCTTGACACTGACTTGAGATTCAACACAGCTTACAAAAATTTCAGGCTTGTATAGATTAAAAAAAGCCAGGTAACCACTgatgttatctttaaaattttactacaGAACTGACTGTTT-----GCTCACCC---TAacttaaacattattttaaatttggcatgctttgcttttaaaatgaggCTTAAGTATAAggcaaaaccaaataaatataatTCTCTGTCCTACTCTATGGGAaaactttttctaaaatgaaatttcagaggATAGAGAAAATCAAGCACACA---TTTGCTGAATTATAGAAACAAATAATGATCAGGTCTGTATGGACATTATTTGTGgtagagggaaaaaggaagagggTAGAAAGACTAGTGAAAACTAGAATGCTACCCACCTCTAAATCAAATTCAGGGATAAACTTGAAAACATTCAATATAAAAGTAAagttatttggaaaaaatataaagagctTTTGAACCATTCATTATATTTTGGAATTTATGATCCCTTTCAATCTAAAATTAGACA-ATTAAATCTCTTAATAGTTAAGAAAACTACGACTAGAATAGCTGATACCTAAGGTAAGG

a score=20107
s chr3           153871709 1017 + 160039680 tttttcgtgacagggtttctctgtatagctctggctgtcctggaactcactttgtagaccagactggcctcaaact--cagaaatccacctgcctctgcctcccaagtgctgggattaaaggagtgcgccac----catgactggGTGACTTGCCAATTTTT---AAAT--GAATATTATTTGAATTTAACTTCAAATTTTTGGA----GATGAATTTTTATTGtatttttatgtttgggtgcttctgtttgggtacatgcatgt--gaatgcagcacc-ctaggcagccaggtgtctgtccagg----gggaagagttac-------aagcagtggtgggtgctggaaatcaagcttgggtgctct--------ggaagaggggtatatattcccagtcacagaac-------------------------catctatccagcccGCTAAATT-----TTTTTAAATGGTA----------TAATTACAATCT----CTATTGTGTGACTTAGTTTGGGTCACAGACAAGAAACTA--TTTCAAGCAAAAAGAGTAAAATATGTATAACT--TATATAAAATTCAGTAA--GATACAAACTTCAGTCTGTCACCTGTTTTTCTTGTAAAGGCAGTGACTCACCGTAGTCAGAAAGAGTACAGGCATGCGCAAACGACAGCAGCATATCCAGCATGGACACCGTGTCAGAGAGCTTGTACAAGCAGTGGATGTGCTCGTAGATCTCACTGAGCAGTTTGCACACTATCCT-GAAACACATGTTAGCCAAGACATGATGACGCTCCTCAAAAGGACATGTGCA--------------CGTTTTAA-----CTGCTTG-AGAACAATAATATTCAT-----AGCTGTGCATTGTAAG-AAAATCTAATGTCTGGCTGGCTCATTTTAGA---TAAAATATTGATATCTCAGTTTATTGTCACATCTACCAGGTAAAAAATAATCCATCTTC---TATATTCA-------TTGTTGAAATGATAGCC-TCATTAAATA-TAAGCAAAACAGACATTTTCAT--ATAAATAATGTGCTTTAGAAAATACAAAATATTTTATATAGATATAATCAAGAACTCAT-TATACACACATCTTATCTGCTAACAATCT
s HiC_scaffold_1 140766928 1090 + 233722169 ttttttgagacaggatttcagtatgttgttcaggctggtcctgaactcactatgtaacctagcttggcctcaaacttgcctcaatcctcctgcctcagtttcccaagtgctgggattgcaggcatgcaccactcaCCATAATTGGTGCccatacagatttttttcaagttaGATTTTCGGTTGGACTGTTGAGCAAAGTAATGAGCAttgaggagttttt------tttttaactttg-------ctgTACAAATAGTGGAAGGTTTGAGTGCTGAGCCATTCAGCAACTGAGGTTTCACTTAGGACCTGCGCACTGTTTCTTTGAGTAATCAGATGTGAACTTTAGAAATTCGGATCAG-TGCCATTTTCACCAAGAAGACAGCTTTGCAGTCTTATttgaaaaacttcaaaatttcttGCAGTTCTTTTTCATCTGTCAATTTC--Taagtaagtaattttttaatgttagaagaaattttaaggataattttattctattttgtg---taTTCTAGACCATAGGCAAAAGACTACATCTCAACTAAAGTATGTAAAACATTCATaactattatataaaatttttgaatgGAAATACACTGAAGTATACAAA--ATCTTTATTCCAAAGAAAGTACCTTACCATAGTCAGACAGAGTGCAGGCGTGAGCAAATGACAGTAGCATATCCAGCATGGACACGGTGTCGGAGAGTTTGTACAAACAATGAATGTGTTCATATATCTCACTAAGCAGTTTACACACGACCCTGGAAGTACATGTTGGGTAAAACATG-CAATGCTTTTTACAAAATAATATCCAACATCATTACAAACCATATTAAACTCTTTGCttgaagtaaaataatatttatggttAAGGTGTGCAATATAAGTCAAGTCTGCCTTTCAGTTATCTTGTTTTAGAGGTGAGGAAATTGAAGCTCTTGCTCAATGTCACAGCTACTTAGTGACAAAGAATCCACATTCTGGTGTATTAACACCATGTTTTTGAAATGACTGCCTTtattaaatattcagaaaaaca-----tttcattaataaa--------------------------------atagatTGAATCAAGTACTTATACTTGGACAGTTCTAATCtgctaataattt

a score=29678
s chr3           153873177 1782 + 160039680 TTGAATCTGTTTTGAAAGCCTAAAATTTCCACTC--TATCTTAGTCTACCAGTTCTAAATGTTCTGCCTCTCCTAAATTCAAAGCTACTGTTCTGTGGATAAGAAAAGGGCTGGCACTATTACGATGCTGCCTTAGAA----TAACAGAGAGT--GAGAAGCCAATG-CTCACAGACCACAGGAAAAGAACAAGCTGAGTTAAGCACGTGGCACAC-AAGCTTTGCACAATGGCGCAGTGCATCATGCACAAGT----CCTGGGAATCCAGCTAGCTCTCCCAGTACATCTCCCCTCATGCCTTCCAGGAGGCTCATTTGTTCTCAACCCAACAGCAGACTTTCTTTTCTAACATTCACAGTTC---AACTG-CTGCAATCAGACAGA--GCCAATTAATTAAATCTAT-TATAATTCCTCAAACTAAACCAATTTAATTCTGTACTCAAATACTTCAAATGTTCTTACATGTAGGTCATGTGATAGATTTCTCGCAAAGACTCTTGGCATCTTTCATTCATTTTAATTAAATCTGCTGATGTAAAGCTATATGAGTTTTTCACTTTAGAAATCTGT-AGGGAGTTAA--AAAGCAATGTTACGCTATGTGTACATGCACATGAGATAAAACATACAGTTCATAGGACAGAAAGGTAAGTGTTCAGGTTAACCACTTTACTTTCTAAGATAAAGTATTACAAGGACAGTTCTAAATACTGTCTGTGAAAAATAAGAGCAAGGTTATATAAAAGATAAAGAAAGATGTTTCTAACTCAGTCTCCCCAGCAGACTGA-----CTGGTAAGTTCTGAAATGGTCTTGCAGAGAGGTTAGAAGGCTGCATCTCAT-CAGCAGGTAACGCACGTGATGGACAATAGGGACCCTCTGTGACT------------CTGACTCTCCTCAGCCCTTGTTCCCTATCGGAACC--------TTACTCAGG------GTCTAGCTCTGTGTAAGACAGTATTT--------------------------------------------------GTGTGCACTGCTTGTGTGTACTAGAGAGTAAATGAGCACACA-----GGAAAAAGTACTAC-----AGTCACGGCGTAAAACCACTACAGAAAAGAAACATTTCCCTACTGCAGACATCCTCAGACCTCTCATAGGAAAATAAATCTGGAAACTGTGTGAAATAAgaggctggt-------gaggtgcttcagcaggtaaaaagaactcacacctgaactggcgacctgaggtcaatccctg--ggacctatggtggaaggagagaac-------tgactccca---------------------------caagatgtcctctgacctccaAGTGTCACATATAAAGCAATGATATTTAAATTTTTAAACAAAAGGAAATGCAGTGTTTCCTAAATTCTTTTGT-------CAAAAACATCTTTTGGACTTTGTTTCTTCCTTTGCCTTTTGCCTCCTCTGGTTGTCCCCCCAGCCCGT------CAGTGTGGTGTGGCCTGCTC-----------------------------------AGTGGGATACAGTGGCAA----AGCCATGTACCAACA------------------GAAGCCTGGAAAGTC-------TACCGTCAATCCCACAAAGCCAGGATCAGCCATTTCCTTGCCACTGCA-AGTTAACCTTAATAAACTCCGAAGGAAGCTGGTCACTGGAGAGTGCAGCGCAGTCTGTGGTCATCTGGATGAAGAACCCCCGTGAGGAGCTGAAGCTGGTCCGTAGGGGAAGACTGTACTTCTCTGCGAGCTGTGCTATCATTCCTAGGGGCCAGAAA----CCAGGAAAACAAGAATCTCCTGATGGGAA-ATTCCCCTGT--------AGCCATAGGCTCTTTACCTATTATCTTATACACAAACAAGAAAGTATTCTTAGGGTTTTTTTTAAACAGTAAAAAAATGTTAATGTCCAAAAGATGTGGAAAG-TACCTTTAAA
s HiC_scaffold_1 140768048 1965 + 233722169 TTGAAACTGTTTTGAAATgccaaattttctctttattatttgaGCTAATCAATTCTAAACATTCTG----TTCTAACtatattattattctttcaggAGCAGCAAAAGAACTGGCACTACTGTGATTTTGCTACAGAGATATTAATTTAGGGTCTGAGAAATTGAGGGCTTACACTACACATAAAAAGAAGACACTGAGTGAAGTCCAAGATATGCCAAATTCTACATCATGGGGACATGCATATTAGAGAAGTATAACTTTCAATGGTACTTTGTTTTGCAATTAGATTTGCCTTGAAGT-TTCTGTGAGGTTTATGGGTCTTTATCACAATG--ATACTTACTTCCCTACCATTCATAATTCTATAATTATCTGTAATCAGAAAAAAAGTCAATGGGTAAATTTTATCTATGGTTCCTTACATTAAACCTATTTAActcaatattcaaatatttcaaacgTTCTTACATATAAGTCATGTGATAAATTTCTCTCAAAGATTCTTGgcatctttcattcattttaattaaatctgTTGATGTAAAGCTGTAAGAATTTTTCACTTTAGAAATCTGTCatgaaatcaacaaaacaaatgtcaagatatatacacatgtatatgaaATAAAACACA-GGTATATACAATATAAATGGACATTTT--GGTTAATTACTTTAATTCCTGAGATATACTATCATAATGAATGTTCTAAATAATACATTC-----ATAAGCAGATGATAGTTTCAAAGG-ATAGCAAGTTATTT-TAACCTA---TGCCAGACAACATGAGTattttgagtaatttttaaatattgttgcaGAAATCTTTAAACAATACATCTCATATAACAAATAACATGCATGATAGTCCT------CCATATCTGACTTTCACTCAATCACTGGCCCCATTCAaccctt--tctttattttatccaTCCCTCTTTGCTTAGtaactctgtctgtctgtctgtctgtctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctgtgtgtg-tgtgtgtgtgtgtgtgtgtgtaaatttgaAAGCTTTTTTGTCAAAGGTACCCCTTGGAAGTAAAGACAGCAAAG-ACCAAAGTGAGTTAGAATTTCCCAA--GCTGGTATATT----------GTGGAAAAGT-----TGGTA--TGTATGCAGAAAGAAGTATTTCCAGCCAGGGGTGCG-CAGTACttagaaggatgaggcaggaggatttctg---tgagttcaaggccagcctgtcttgtctcaaaaagaaaaagtatttctaTGACTCAAAGATTTGGAGaagtttgatttaaaaattcaagGAGATTTCTTTACTCCAGGACTC-CAGGAAAATCTTTAATAGGAAAATGTATCTGGAGAAGTACTTACAAGACTGGgcaattttttttataattcattaaaaatagcTTACAGACTTTTtgtcttcatttatctttt--tttctccaccCAAACTCCTAAACTGTGGGACAcaatgagttttgtttttctccaagaAAGTTTCCAAATTACTTTTAGGATTACATGGGTGGATTGGAGTAGGAAGAGAAGCAACATACACACATTCAGAAATTTGGCATATAAAGCCCAAGGAGTTGGGGAAACACAGGTATAACTACAAAACCAGGAACAATAATTTCCTAATCACTCTAGAATGAACCTTGATAAATTCAGAAGGAAGCTGATCATTGGGTAACACTGTATAATCTGTAGTCATCTGGATAAAAAATCCTCGAGCAGAGCTAAAACTTGTCCTTAAAGGAAGATTATATTTTTCTGCAAGTTGTGATATCATTCCTAGTGagcagaaagaacaaaataaaaccaaaggatGTTAATAAGAATATTATTCTTTCcatttaaagtcatcatattttt--cttgtattttatacaTCAATAAGAAGataatgttatttttacttt----------aaaatttttaatatccaGAAGATGTGGTTAGATACtcttaaa

a score=28818
s chr3           153876623 1766 + 160039680 TTACCTGCTATGTCGTCCACTATCTCTGTGTATGTCCTCCTGGCTATGTCCAGGAACTCACTGATGTTAGAGCGCACTGCATAGCACTTCTGAGTCCGCATGTTCAGGCAGCCCTTCATGTACCTTGCATCATCATTTATCACTGTTTTAATCTTATCAAGTATTAGCCCAAACCTAGCATTAATACAAAACAAA-AACAGGTAATAAG-CAAATAGCCACTT----------------------TCACCGTTAATGAAACCAAA-CCTTTGTTGAGAGTTATTTTACAGTAAATAATTAACAAATGTTTACATTTATCTAGATTAAAGCTATCCTTGCCTCAATTTAAAACTATTTTTGCAGCCAGGATTACTCAAAAATGGTATGAGATGACCAAA---------TAAATTTGCTA------ATGGGCACACCTCCCAAGCTGTGCATGATCAGCACAGCTGTGAGT---AAATACAGGTTCACTATCAGCACGGCCCCTGATGAACTGACAAACAATTCTAGCTCCCTCTTCCTTCATCCCACATGCACTTAGGCCATATAGCAAGGGCTGTATTAGACAGAGTTAAC------AAACAAACATA------TCCCCTTCAGTA--------AGAGGC----CATGTGCTGTGGGACACAA-ACAGGAGCA----TACAACTACCAGTTGACACAGTAATG--ACAACTACACAAGCCACAGACT--GTGACATCAGTTTACCTAGCTTTTCAAATATTCTGTTCTTGAACATTACATTTAATTAAGTTGGTTTGATTATCAAGTTCAGCTTGTGGCATAATGAAGGATGCAAATCTTCGATCAACAAGGCAACTTTTAAACATGATAATCTATTTGGTCAAGAACCATGGT--GCTGTTGCTAATAATTTAACAATACTAA---------------TTGTTTTTAGAACTTGTTCTATACTCATAT---CTATGGGATT----------------TGTTTTTCTACATTAGCTCTTCAGTGATTTATCAAAAGAAAAGGCTGTATTTCCATACATGAGTATCCCCATCAAGAAGGGCTATAAAGGAAGCACTGGTCATTAGTACAAGCAGCCACTGTGCTTTTGTCCTGCT----CACAGGATTA--------ATTTGTAACTGATAG----TTAATGAG--TTCTTTGAAGAAACTTAGATAGTTAtttttgagagaggatctcagttttcctggaacttgctatgtagacaaggctgcatgaacccacagagatccgtatgcctctgcttcccaagtactggcagtaaatgcataccaccacgcccACAC-CAACTAATTTTTCTATAGAAGATACAG-------TTAAAATT-GTTATGATC---AAGAATAGAAGTATGATCTATTAGTA-------GGTGACAA--ACCTATGGTCTTCCAAGGAGCCATAGTAAGCTCTTAATAGGGGTGTGCTACAGTTCTTTAAGGTGACCTGTTAAA----AAAACAAAA-----TTACAGTCAGCAAGTCATGGCACTACTCAAACTCAACACTTGGT---------------ACTCAACATTTGATCAAATGC--TCTTGCTCCATTTTCTCATGTTTATTCTCATGAG---ATTTCAGACATGAATGAAGGTGTGGACAGACTGCATCTTC---------CCATAAAGTCATT-----CACCACTTCAAGGTGAAGATTTCTGTTTTTCTGTCTCCCAAA----TGACATCCAACTTCTTACTAAGGTAGGCACTGAAACAGCCGCTGCTGTACACCTTACGTTACCCTACAGATAATTTCAATATTTGGA----------------------------TGTATATATTTATAAATG-AGCAGTTTCTCCCTCCCCATACAGTAGAAATGGGATTGAGAACTTTCTTCT--TCAGTGGGAACTGCGAATGGGCACTAACTGAACAAAGGGCAGAGGAGGA
s HiC_scaffold_1 140772091 1855 + 233722169 TTACCTGCTATGTCATCCACAATCTCTGTATATGTCCTTCTAGCTATGTcaagaaattcatttatgttAGACCTCACTGCATAACACTTCTGGGTCCTCATATTTAAGCATCCTTTCATGTATCTTGCATCATCATTAATTACTGTTTTAATCTTTTCAAGTATAATTTCAAACCTAACATTAAGGTAAAAAGAATTATAGTTTATAAGTCAAAcaactatttaaatttataatatgtTATATGATTCATGTTAATGATAGCAAATCTTTTGTtgaaagctattttgaaataattaagcattaaatattt-tattta--catgttaCAACTGTGACTATATCAGGTTTAAATTATTTC----ATCAGGATTAGTCTAAAATAGCATGAACCCTCCAAGAGTACTTCTAAGATctgctgatatatatatatatatttcccaagTTATA-ATACTGATTTTGTctgtgaatataaaatata---tcacta-AAGAACTGTTTTT-------------ACAATAGTAGCTTTGTGTTTATACACTCAGTAAACACT----ACATGTAGCTAGGGTTTCCTTAGGCAGGGAGAACCACAGAAAGACAGCATATGGCCCTCGTCCTCAGTACTGGAAAGAGAAGCTAAGCACATATTGT--GACACAGCATAAAAGCCGTGTTACAGCTA----TGAATAATGAAATGCAATAATTAGGCAAAACAGAAACCTGGTAACACCTATTTTcctaaacttt------tccttttttt----cttatttgtaattaACCTGGTTTCATTAAC---TTTAGTTTGTGATCTCTTTCA-GATATCTGTCTTGAATCAATAAAACTGTCTTTAGa----------------gtgaagaaataagataaattATTGCTCAAAACTTAACAATATTAAACTAGACTTAAATATTAGCTTTGAGGACTGGAACTTTA-TCATGTTCACTATGTAATCCTAGGACCCAAGTCAGTGTCTACAGATAGTAGGAGCTCAAT-ATTTACTAAAagaa----ttgtatatttatttagaattatC---------------------------------TATTAATTTTAGTTACCTTAGGACTT---TCCTGATTTACCAAAggataagaatatatatttatatttttaagtcttttaatgGGAAgtcattaaaaaaggaaatataaaaattctccCTGGAG--TTTAATTTTTCATGCTATTCTCATTGTATTTATCACATTTATAAGACGAATATATAATTATAACTTTA----------ATGAACAGTTTAAAGAGTCTCCTTAGCCAAAACTCAAGTAACTATTCCACAGAATATaatgaaaatctttaaaatcagGTATGATCAAAAAGAATAGTAATCTGATATTTTATCAACACTGGAATGACAATGACCTCGTGTCTTCTAAGGAACCATAGTAAGCTCTTAATAAAGGTGTGGTACAGTTCTTCAGAGCAATctgttaaagaataaaataaaaagtacttatGTATAACAAATTATGACATTATTCAAACTCAGCAATTCATTTCATGTAATATCACACTTTATGGTTTACCAAgtactttcttgttttattttctcatttttgtgcacataaaaatatttcaggtaTGCAC----GTGAGGATAGACTGTATCTTCATTTTCCAGACAAAGAGTGAATAGTGCTACATCTTCACTCTTacgatttctatttttcttgtttccaaATTGTTAATATCTAACTACAGACAGCAGTGGGTATT-ATATAGCTACtgttgtatat------ttaaaataaatataatcctGAAATTTGGGATAGAAATatattaaactttaaaagttctttgtatatttataaatacagcAATTTCTCCAT----ATACAGAAAAGgcag------gaattttatttttattaatggaaACTATGAGTGATcactaataaaacagaaaaaagaggagaa

a score=11413
s chr3           153879243 339 + 160039680 ATATATGTAAAGGGA--------GAAAACGCACTATTCTTACAACTT---CTAAGTTTAC-TTTTTTCTAAAGAAAATGTCTAAAAATAGTATTTTATATGTTTTGTGCAATA---CACATGTGAATTACCTTTAAAGGCTCCACAAGTTCCAATGTATGCTTCAGATAGATCAAATTTGTTATCTTTGATTCAGCTGCGTTAACCTGTCCAGATAA-AAAACAAATGTAAACACCCTAAGT-TTCAATTCAGTGATGGG-TTTCCTCTTGGCCAGTCAACTTCTACGAATAATAATATCCCATAGAATTATACATCAGC------------AAAGCCCAGATAGTGGTTAGAAATTACTGA----CCATAAC
s HiC_scaffold_1 140775407 360 + 233722169 atatacataaagagaaaaatacagaaacagcACTATTCCTACAACTTTCTCCAAGCTCAAATTTTTTCtacacaaaaaatttt----taatgtctaacatattttatataatatatcaCACATAAATTACCTTTAAAGGAGTTACAAGTTCCAAGGTATGTTTTAGGTATATTAAATTTGTTATCTTTGATTCAGCTGCATTAACCTGTtaagaaaataacccaaatggacataacataaatatttaatacacAAATGGGTTTTCCTCTTGAACTTT---CTCTTACATACAGAAGAGGCTC------TTATATATCAGCCTACCCAGGATGCCAGCCTAGCGAGGGATTAGAAATTACTGATCTGCCATAAC

a score=17385
s chr3           153886793 372 + 160039680 AAGTAAATAATCAAATGTGCTCACCTGACTGGAGTCCAAAGAAGAGCTCCTCGTCCTGCAGCAGCTCCTGGACACAGTCCAGCCGCATGCTGATCGTCTCCACATCAACCAGAGGCTCCAGGATGTTGGAGCGCAGCCTTCGGCTCCCTCCCGCAGTCTTGGTGTAATTTAAAACACCGAAGAGAGTGTGATTACTCCTTCCAAAAGATAAG-GTGGGAATCTTATTAAGGAGAAAAAGAAAAATCC------TTTTCCTTTTAACTCTG-----AAATAATTCTATAATCTACATCAATGATGCATAAACTTTATTATACAGTCAAATTACATGGGGATTCTAATTCAGTAAGTCTGAGTTAAGGCCT-AAAAGATACATTTTG
s HiC_scaffold_1 140798274 381 + 233722169 AATTAGGTAAT---ATTCATTTACCTGATTGAAGGCCAAAAAAGAGTTCTTCATCTTGAAGTAGTTCTTGAACACAATCTAATCTCATGTTAATGGTTTCAATATCAACTAGAGGCTCTAATATATTAGAACGAAGTCTTCTACTCCCTCCAGGAGTCTTAGTATAATTTAGCACACCAAAGAGAGTgtgattatttctttgaaaacataaGTGGAGGAATTTCATTAAGTatacaaaaaaaattccaagacAATTGCATTTTAACTTTGTAATTAAATAATGCTATAAT-TACATTAGTAATTCTCAAACCTTATTTTGCATGCAAATTACAAGGGGATTCTAATTCAGTAGGTCTGGGATAACACCTGAGAATCTACCTTTTG

a score=17357
s chr3           153888493 704 + 160039680 AGTTTTGCTTTTTGTTGGTTTGT-------TCTTTTGAAAACCTGGTTTTG-TGAAAAATCTGACT---TCAGAAACAACACGGCGATGATTT--------------------------------AAGTGTTTATTTACTGTTTCTCCACCTA-TAATTTAAACAACTTTCAAGCAACTAATCCCAGAAATTGACGACATGAAATTTAGTAAGTCAGGAGAAAACGTCAGGTTGTCTTACCTGTAGTCCTGGTTATTAACTAACAACTCCAGGTTTTGGGCCGATGATGAATCTATCATGGCTGTCTGCTCACTACCTTGGAAATAAATCTTTAGCGATTTGGGTGCATACACTGAATTCTGAATGAATTCGACATACTTTAATAAAGCTGCAGCAGCTGCAAGGCAGTAATACCTGTGA-GTGACC-ACAGTACAACAGTGTCAACTTAGGGTAAACAA---------ACAGAGAGTAGTTCTTA----AATCCAA----AGGGGAAAAAAAGACATTGAGAATGAAAATTTTGGAAACTAAGTAAATAATATTAGATTGCTTTAACAATGGATACATTTTCATTTGtttt--aaatcagtctagtctagagctgcctggaatccaccaaaccttgagcatcatccttccaagtgctgagattacagatgagagccaccatgctccgctAGAAAAGGCAGCCTTGGAAGTCTGTCACTTTCAGGATAGTATACTTTAACACACTGCTTATTAGAAGACAACATTCagc
s HiC_scaffold_1 140800635 685 + 233722169 AGTTTTGAATTGAGTTGTTTAATACAAATATCTATTTAAGACCTGGTTTTGGTGAGACATCTGAGTAGTTCATCAATAATG-GACaatgattttttttggtctttttcgttttttaaaagactaaaaatgtttattcaatatttctccatcaaacaatttaaataacattaaagTAACT--TTATAGAAAAATGTGACACAAAAAT-----ACTATTGGAATAATATT-GAATGACTTACCTGCTGTCTTGATTATTAATTAACAATTCAAGGTTTTGAGCTGAAGCTGAATCTATCATGGCTGTCTGCTCACTACCCTGGAAACAAATCTTCAGCGATTTTGGTGCATAAACTGAATTTTGAATAAACTCAACATATTTTAACAAAGCTGCAAGAGCTGCAAGGCAGTAATACCTGTAAGGTAACCAATGATACAATAGTGTGTCTTCAGGATAAAAAAAATATTGCTACAAAAGGAAATACTTATTTCACTTTAATATTAGGACAGTTAAGAACATTTGAACAGCACTGTTTAAATTCAAAGTGAAAAA-------------GTACAATGAATGAATGTaccttatttttgaaaaacagacaaata-------accTCTAGCCCATAAAAC-----------------------------TGACAGA-----------------------AATAGTCAGTTT---AAGTCTATCACTTAAGGGCTAATAGGCTCCCAAAAATCACCTGTTAGAAGACAACATTCAAC

a score=13213
s chr3           153889834 461 + 160039680 AACTATGTCTCTCTTCTGGGA-CTCACATTTCTAGCATCCTGTAGCCAATCAAAACTTTTCACTATGAAGTA---------AAACTACCATAGCAATAAGTTAGAATTCATTTGGAAAAAATCTAACTTACACCAGAAATGTACACCTTATCCATAGTTTGAGTAACCCTTGTATGTCAGTAATAACTGA-ATGTGCGTTTGAGCCAGGTACTGTCCTAGA-GGCAGTAATACAA---AGAACACAG-----AGAAGCTGCTGTCCATGGGGAAGCGGC--ACTGGACAGC-----------------TGTACTCACCTGGACTGCACCTCCATTAGCACAGAACTGAACTCAGCTATGCACAACTGCTCAATGTACTCTAAGCCCTTTGTTTCGTTGAAGTATTTCCTTTGGACTGTAGTGAAATTAACGTTCTGAAAAGAGatttaaattttaaaataaatcattaaatGGCAAGTTGCCA-TTCAATACTGATCTCTT
s HiC_scaffold_1 140801578 450 + 233722169 AactgtatttcacttatgagctcTCACATTTCCTGTATTATGTAGCTAG-CTGAGCTTTTCATTCAAAAGTACAGTGAACAGAACTATTAGGGCAATAGTTTATTATAAGTTTGGACAAATTCTA---------------------------------------------TATAAATCA--AATTACTAATATAGGCTTATGAGCCAGGTACTTTTCTAGCTGGTAGAAATACAGTGGAGAACACAACAGATGAAAGTCCTTGCCCTTGTGGAAACCCCCCACTGGATGACATTACTTTCCTCAAGATGGAACTTACTTGGATTGAACTTCCAGTAGGACAGTGCTGAATTCTGCTATGCATAGCTGTTCAATGTACTCTAATCCTTTTGTTTCATTGAAGTATTTCCTTTGGATAGTAGTAAAATTAACATTCtgaaaag---ttttaatttcaaaatgaaaattttagtgGCCATGTGCTAGCTCAAAACTGCTGTCTT

a score=15863
s chr3           153896670 507 + 160039680 ttTATCATCTTT-----TAATAACATTTTAGATTTCAATTTGCATTAATTGA-----------------CTACCTTAGGATTTTAAATA----GTCACACAATTT-------CTTTTTGTAATATTATGACATGTATTCTAAATAAATAATTACATTTTGAATGTTACC-AGAGTGAAAATATCTTACCTTAAAATTTTCTGTGATCAGAGTAAATAACTTGGTTGAATTTCCCACAACACAAGCAGTATTTGACATTATTATTTCCAAAGGTGATAAAACTTGGAGTTTAGTGATCACCTGAAATTGTTAAAATGATCATTTTCTAAATGTAAGCAGTTTCCAAAGTAGTTTTATATCCTAA----AAAGTAAA-----------CTGTTGAAGTGC-ACAGATAAA-----ACTCAACAGTCTGAATTTAACGT---TTCAGTCAAAATATATTTTAAATGATATACTAAATATCTATACCTAGGT----ACAAATTTAAAATACCAGAAAGATAGGTCATGTTTTACTCATTTATTTCTAGAAGTTTAAACTCAAAATAAATCTAA
s HiC_scaffold_1 140806221 549 + 233722169 TCTATCATTTCTGATATTAGTAGTTCCTTAGATTAGGATTTGTATTTATTGAGTCCCACTTTAGGACTCCTACTTTAGGACTCTAAATATACAATTACTCAAATTATTGCTCCTTctaataatattataaaacatattttagataATTCAAT------TGAATATTATTGAAAGTTAATACTGTTTACCTTGAAATTTTCTGTGATAAGAGTAAATAACTTGGTTGAATTCCCCATAACACAAGCAGTATTTGACATTATTATTTCCAGAGGTGATAAAATTTTGAGTTTAGTGATCACCTGAAATTgttgaaata---atttcttaaatataagc---TTCTTAAACATTCCTAAAATATAAGCTTAAAACAAAGAGCTTCGTCTTTCTGAAAGTACTTCAAATTAAttcatagacaataaaattatgttaatatgtatttaatcaaaataaatttctaatagCATATTAAATGTACATCCCTATATTCTAATAATTCTAATATTCTAATAAGA------ACATATTAAATGTATATCcctatataaataaatgtaaaat--atctaa

a score=11564
s chr3           153897279 260 + 160039680 CTTACCTTTGCATATGTTGTATTGTCTGCAAACTGTGACAACATAATCTGTGGGCTTTTTAAATCAATGCTTGCCATTCCTATCTCGCCTCTGGCCAGCCCTCTTCCTTCCACCACCGCTACAATGACTGATGGGGCGTGTGCAGACACCGC---AGAGGATGTGGCTGGAGACAGGTGGCATGAAGAACACATATG---AATGTTACTGGTTGCATATAGCTCCTTCATGGAAGCTATATGCAAAGTCCTAAGTCTAGTGGTTCT
s HiC_scaffold_1 140808318 263 + 233722169 CTTACCTTTGTATACGTGGTGTTGTCTGCAAACTGGGAGAGTACAATCTGGGGGCATTTTAAATCAATACTCGCCATTCCTATTTCTCCTCTGGCAAGTCCTCTCCCCTCCACCACAGCTACAATAACTGACGAGGAATGTGCAGACACTGCAGAAGAGGAGGTAGCTGTGAAgagtttttaaatacaaaatgtataaGCAGTTCTAATAATCATTTCTAATTCCTTCACATAAGACCT---CACAGCTCCAAGTCTGGTTATTTT

a score=17059
s chr3           153901173 498 + 160039680 AGAGAGATTTCCCTCC--------TGGGTCAGAAAGGTTCAAATAACACAAGGTTGCATTTATTAACAAACAAGAATGGAAATCTCATAGGCATGTTAGCCTGCCCTGAGGTGCACAGGGGTCAGTGA-TATATGCACCTTTCCATCCTTTCTATCAGTGGTAGATGAACCTCAAATGAGCTAACCACCCAATTTTTAATTTATGAAACTTTAAAACATTTTAAAAGATCATC-----------AGTTTTACCTGAATATCCTACTTGTGGTGTCCAACTTTTATGCCCTGATCTCTGGGGATTTCCAGCAGATAACGGAGTTCTAAATGTATGTGGGTAAGTGGTATCTCGTGCAGAAGATGAGCTTGTACCAACAGGAAAACTGGATGCAGCTCTGTGTATAGCATAAGATCTTTTGTTTCCAAATGATGAACCTAAGTTTGA--AATTTTATGATTAATTCTTAATGATTAGCATTAAGGaattatatattaatttctaaaatttatatattgtcta
s HiC_scaffold_1 140816989 477 + 233722169 AAAGAGATCTCTTTCCAATGCTTTCTTGTCAGAATGGTTAAAATATTATTGATGTGCATTTAGTA-CAAACAATATCAGAACT-----------------------------------GGGCCAATTAGTATATTTATCTT--AATAATCCACATCAGTTTCAGAT-AACTTCAAATGAACTGCCC---TAATTTATAATTTACAAAActttcaatgtttaaaaaaaatcactgcaatTAATCTATTTTTACCTGAATATCCCATTTGTGGTGTCCAACTTTTATAACCTGATCTCTGAGGATTTCCAGCAGACAATGGAGTTTTAGGTACTTGAGGACAATTAGTTTCTAGTGCAGAAGATGAGCTGGTACCAAAAGTAAAATTTGATGTAACTACATTTGCTGCATAAGATCTTTTGTTTCCAAAGTGGGAACCTAAATTTGAACAATTTAAGAATTAATGCTTAAAGATTAAAATTACACAATGATGTATTAATCGA-AATATTTATAAcatatcta

a score=25688
s chr3           153907445 780 + 160039680 ACTAAAGATCTAAATACAACATATTTATTTTACAATAC------TTATATAATTTATC---ATTAAC---ATATGATATACAAAATATTAA--------GTCACGTCTAGGTTTGATAAACACTTCAAATACAGCAGTAATTCATATTGCACA--CTACAGCA-----TCTCTCCCATCTGAC--------TAGCTCACTAGCTCAGGCTGGACATTCACCCTCTGAAGCACCTCTTCTGGCATACAGAAGACAGGGCTAACAGGCTTGATCTGCTCTTCTCCCAGAAGTGACAACCCAGCAATGCCAAATAAGGTATGAAAGGGATCCACCTGTGGGAAGTTCACAAACATGGAAAAGGCTCAATTATCTATCTGTCCACAGTGAAGTGTATCTTGAATACCACTTTAAAAGTTTTCTGAAGACAAGTATTTCTAATACTAGACATAAACAATTATCACTACAAGATATTTCTATCAGCTCTAGCCTTTGTAACTAA------CACATTTTAAAAAAACACCCAAGGTAAACCCCC------AAGACAACCTTTGGACTATTTCTTACAGGGCACTATTTTTAGTGCATTAGAAATGCCTATAACCATGAAAGTCAATCAACAATGAAAAACTGCAAA------------GCCAGAATTGTACTGACCATATCTCCTGGTCTGTCTGCAAATCCTCCCGTCTCTTCATCTTGACACGCTAAGATGAAACTTCGAAGCTTTTCTCTGTCAATCCAATGAAGTCTCCCGATGATCTTTAGGGAGGCCAACACCCACCATGAATAGCACACATCTGGTAACTAGAGAAGGGGAAGGGGGAG
s HiC_scaffold_1 140819554 763 + 233722169 ACAAAAGCTGaaaatacaata-atttattttacaatatgtataactatataatttattcaaattaatttaacacaatatacaaaatattaacaaCAGTAGACATTTTTAGGTTCAGTAAgcactttaaaaacagaaacg-tTAAGATGGCAAAAACTACTACACATACTTTTCTCCATCTATCAACAAATCTAGCTCACTAGTTCAGGGTGAACATTTACTCTCTGAAGCACTTCTTCAGGCATGCAAAAAACAGGACTAACaggtttaatttgttcttctcCCAGAAGCGACAATCCTGCGATGCCAAATAATGTATGAAATGGGTCCAcctat------ttaagaaaaac--aaaagg-------------------------------attt---aCACTACTAAGAAA------TGAAgacaactatt---------------aaaaaaaaaccatttctAAGTATTTCTGGCAA---TAG-----GTGataaatttcttcatattttactaTGGAAGTAATGGTAAATACTCCTTTTCAAAGCAACACTTGCATGGCCCACCAAACTACACCACATCCACTTC--TGCAAATCACTAGAACCATGAAAGTAACCcatcactgaaaaaaatcaacttaatCAAACTTATCAGAAATACACTTACCATGTCTCCTGGCCTGTCTGCAAAACCTCCagtttcttcatcttgacatgCTAAGATAAAACTACGCAGTTTCTCTCTATCAATCCAATGAAGCCTTCCAATTATCTTTAAGGATGCCAAAACCCACCATGAATAGCACACATCAGGCAAct-gaaaggggggggggggag

a score=51232
s chr3           153908780 2144 + 160039680 AGATAATACCTTCTCGGGTCTTCCATTGAGTCCGCCTGAGGGCAACTGCCGCTCACAAAGCCACCAACCAAGTAGGTCGGAGTTCACTTGGTGCAACTGACTAGTTATGGCCAGGAATCCTGTGCAACAATAGATCTAAAATTACAGACATAAAGTACACAGGTATAGTTT---AACAGTAAA--TGACAGACACTACCAAAATTACTAAAGCTCCATCTTTGTTATC-----TCAGGTTGTATTAGTAGGTTCAATGCGACAGTGGAATGCTATACTTATGC------ACAATGTTCTCTGC----------ACTGGGTAAGGTTAG-------TTCATCTGTACGAATA-------AGGTCAGGGTCATGCCTC--------CAATCCCAGCACGTAGCAAGCCCCGAGGACAGCCTGGA---------CTACACACACAGTAAGCCTCGAGGTCAGTTAACAGCACAGAAT-----GCAGACCCCACA-----TAAACAGACAAATGCCAATAAGGAGCACTGGTGTTTACTTAGG--------GTGAAGTTGTGTAGACCCAGCATATACACA---AAACTCAGTGAGAAGGTGTGGCCATTCACAACACAAAACCCCTATAAACTTTAATTGCAAAATTACCTGCCCAGCGTGAGATTCAGAGCCTGGTCTGCACCCAAATCCACCATCAAAGTTCATGCAGGACAAAACAAACTCAATCGCCTTTTCCACATTAATAGCATCAAGCTTGCCCTATGACGAGAAAGGAAG--------CAGCCTATTACAGCTACCTAGTACTCAAG--TGTTTAATTCGGTCCTTTAATGCAACA---GTCAAAGCTTACCAAAAGAGCCAAAGTTGCCACCGCACAAAATGAGAATCTTGTATCAATTTCTCCTAAAAGACAAAAAGAGCCAAGGCAGACATGTAAGTGCTACCAAGTCACCTAAGAACAAAACCCATT--------AAACTCCCCAAAGTCAAGACT-----GACTATGCTCACTAGGAGGCAGTCCCCCA---------ACTTCTGAGGAAACCAGCTAGGCAAATA--GAAAGCAATAGCC--TAGT----AGCTTGCAAGGGCCCAGAAAAGAAAGGAACCTATAAAATGGCAGGAGTATATGCCTCGCCCCCCATTCGGGCTAGTAATTT--AGTAACATAATCAAA---GCCCTGCTTTAAAAAAGG-----TTCACATCCCACAAAGCAGCTGGTCTCA--GGACTGCATTTTGTTCCCCCCCA-------GATTATCTAAATTAATCAAAGGAAA----AATTTCCATCTCCCAACTCAAGATATTTACTAATTTGACAAACGTTTAGAGACCTCCCC-----AGGTCTTTACCTTCAGGGAAGTTAATTATTATTGGAGATAAAACTTGAACCTACCTTATCTTTTAGTGTGG----------------------TGTGCTGACA-AGCCAGCACGGGGCATGCTGGGACTTCCAGCAGGCCATTTTATTCCAGTTAGACCAACTGCTTAGTGGGACCTGAAAAGACGGAACAACTTGAA-------ATCTTATGATTACTACCACCAAGACAAAAGATATTCTGAGTAGGAGTAGC-TGACAAAAACTGCAATCTGGTCTTACCCCAAATGTCTCCAGCAAAGGAGCCATCTTCTTTCTGTAGGCTCTGAACATAGGCCACGACCTTATCTACGTTGATAACATGAACACTGTCATACAGAGTAAGAATCTG-------AAAGACAAGCGGGTG-----------TCACAGGTTTGTCCTGG--------------ATCAGAGTCACC---------------CACCAGGCCCTCTCAAGCTTACTATAAACTTCTTGTTCCCTTGATAAGGTAAGAA---------------------------------------ACAGGTA----------------------GGGCTTTAACTATCCTCTGGCTCTTCATTGAAACCAAA------------------------------------------------------------------------------TTTGAACTGGACTGTG--CTTCAATTAACATA----------------------------------CACAAGGAGTTCACCT------TCCAAGGTCTCAGTGTAATTT-GTAACTTGCATCAGGTTAGCATTCAGCTAATACATGCCATGACATCACTGACCTGTGGGAAGTAGCCTTTGGGTGGTCA-------------------------------------------------CAGCAAGTGGCA-------AGGTTTCACAAGGGCTCACCTGGACAGCACTGAGCGTGTACAGAAGGTGGGGGTCGTGCCCAATGCTAGCACTTATTCCCCCACACTCATGCTGGCACGACTTGATAAACACCAGGATTTCTTCTCGGTTCATGCGATGAAGCTGTCCCATGAGGTCCATCACAGTCAGGCCCCAATAGACGCCGCTCATTCTCAGGTATTCAGACATGCAGTATTCCTAGG--AGAAGCATCTCAGATTTGCCACTCTGACTTT
s HiC_scaffold_1 140821420 2482 + 233722169 AAACAATACCTTCTCTGGTCTTCCATTGAGTCCACCTGAGGGTAACTGTCGTTCACAAAGCCACCAACCAAGTAAATCAGAATTCACTTGATGTAACTGACTAGTAATAGCCAGGAATCCTGTGCAACAATAGATCTAAAATTACAGACATAAAGTACATGTGTATAGTTTCTTGAAAGTAAAGGTGGTAACAACTATTCAA-TTACTAAagctattttgtatttaaacatgGTCAGAATCTCTTCACAGCTT--ATTCAAAACTG------TTTACCTATGTTCTCTGACATTAAGATCTGCTTACTCATAGAGCAGACAAGGCTAGAACTGAATTCACCTAAATGAACATCACTAGAGAGctaggatgtggctcagtggtgtcAAGACTGCTGTCTAGCATGAtgtgggggtgggtgggggttTAGCTGCCTCCCCCAAAGTTA---TTTCGGTTAACTATTATCCTAGTTTTCTTTGCTTGTGTCAGAAGTACTTAACAGGGTAATgtatattataaaaac----atttccTTAAGTAACAATTACACAATTTTTCGGTACTATCCCACACACAGTAAAATTTACTACAAACACA-GTCTATTTTACATTAATAATCTCTATAAA--------------TTACCTGTCCAGCATGAGATTCAGAACCTGGTCTGCAACCAAATCCACCATCAAAGTTCATACAGGATAAGACAAATTCAATTGCCTTTTCCACATTGATAGCATCAAGCTTGCCCTATAAAcaaaagggaggggaaaaaaaaccccacta-aatTCCAGAGTATTCATGGATGATGAAATCA---TTTCAATGTAGAATTTATCAAAGCTTACCAAAAGAGCCAAGGTAGCCACCGCACAAAAAGAGAATCTTGTATCAATTTCTCCTAAAATG---AAAGTGTCAA--CATACATGTTA-------CTAGTCTTCTGA---------TCATTCATACTGCAAGTTCCTAAAA---AAAACTTATGCAACTAT-CACATTAGGAAGCACAATCTCAGATGTCTTTATCCCTAAAGAAACTAGC-AGAAAACTGTCAAAAGTAACTGCAAATAATCTCAAACTTACAATTATATCAGAAAGTTAAGAAACTGAAGCGAAACATTAGT---------------------------TAATTTCTAATAACATAAATAAACTTACCCTATTTTATAAAAGTAGATTTTCACATCCCATGAAGCAGCTGGTCTCTCTGGCCTGTACTGTGTTCAGCCCTAAAGCAGAGATTATCTACATTTACCAAATAAAATCTGAGTCACTCTCTCCA---TCAAA-----Tagtaattttgtaaaaattttttatttttcccttttagcatgtttaatttta---aagttacCCAATATGCGGGGAAAATATTTCACCTACCGTATGTTTTAGATTGGCCCCTCTGTTCCAGTGCTCCTGTATGCTGCTATAACTACCACAGAGCATGCTGGGGCAT-------------TAACTCCAGTTAGACCAGCTGCTTAGTGGGACCTGAAAAGATGAAA-AACTTAAATCTGCTCATCAACTGGTCACTACCA--AGGCCAGAACGTTTTAGTATTAAATTTAGGGTAGCAAAGACTA-AATCTGACATTACCCCAAATATCTCCAGCAAAGGAACCATCTTCTTTCTGTAGACTTTGAACATATTCCACCACTTTATTTACGTCAATAAcattaatactatcatacagagtaAGAATCTGTAATATGAAAGACAAGTAATTTAGTAAATAACTTTTCAAGTTCATTCTATTGCTATGCTAACTTGTCAAAGGAAACACTTCAGTTTAATATTGTCAGCTATTCTCAAAT---ATGTAGACTATATGgttattcaataaaattaaaacattttagcaatatttccaaacatttaaAGCATTTTTCTACATATAAACTTGGCATTCTAAAGtacttggattttttttattttttc-ctttttatcggtaccgggaatcgaactcacgactgtctgcttgcaaggcaggcgcttatgccgctgagctacatacccaggcCCAGTACTTGGATTTTTAAACCATAATGTGTACATCCattaatatcaaaataaaaccaattatttCCAAGTCTCATATATCAAAGGTAATTAAACTAACTTCGCCAAGGTCTCAGGGTAATTTCAGAATTCACATCAACTGCACATTCAGCTAATACATGCCATGACATCACTGACCT-TGCAGAACAGGCTT-----GATCAACAAAATTTATTCTGTCCTCTTCCTAATACAATTTCAACTCCTGACTCCCAGAAAACAGTATCAAGACAGAATTTGAAAG---TTACCTGGACAGCACTAAGAGTGTACAAAAGATGAGGATCATGCCCAATGCTGGCACTTATTCCACCACACTCATGTTGGCACGATTTAATAAAGGTCAGAATTTCTTCTCTATTCATGCGATCAAGTTGTCCCATGAGATCCATTACTGTCAAGCCCCAATAAATGCCACTCATTCTCAAGTACTCAGACATGCAGTATTCCTAAAATAGTAATTTCTTAAATGGGTTACTTTGAATTT

a score=21688
s chr3           153911582 667 + 160039680 TACATCAAGTTTAGGTAAAACCTTTTCAAGGTCTCAGCGTAATTCTAGAGCTAAAGTGTTATGACACATCAGCG--AATTCAGATAATACATGCCAACACATCATTGACCTTCAAGGTTTTACCCCAGACAGAAATGAGCAAACCCCTTCTA---CCTGCAGCCCTGCACTTCCGCCCTTTATGTACCAGCACATGACTGATGTGGTCAAATACCAACCTCTGATATACAAGGTACACCTATAATACATTTTAAATCAGGCCTCTCAATTAGTATTATACAAGTAAGTATTATACTTATTGCTGTTAGTCTTAGAAACCTTTCAACAGAAAAAAGAATCATACGCACATAATCATCTTTCTTTGAGCCATAGGAAGCAATATAATCGGCATGCTTCTCCAGCAACAGGGTGTCAGGCGCATCTGACTTGATAGTAACGTCTTTCTGCTGTGTGCCCTTCCAAGAAAAAAGCA------------------GAGATCC--------------CATTCACCATCCGG-----AAATCGTGACATCTCAGACTCACACATAGCCAGATCTCAGTACTTTTTTTCTTTCAGGTCTCAGAGTAATTCTAGAGCTAAAGTGGTTTATAATCAACTTTAGATTCAGAATACATGCCAGCTCATCATTGACCCGAA-------------TCTTGACGCTTATCTTTTGAGTTATGCCAGAAATACACACT
s HiC_scaffold_1 140824038 643 + 233722169 TATTTAAACTTCAGGTAAACTCATTTCAAGGTCTCAGCGTAATTCTAGAGCTAAAGTGTTATTACACATCAGCAGTAAATCAGATAATACATGCCAATACATCATTGACCTTGAAAGTATTACCCCAATTATAAAGACAGGGACCAATTTTGTATCCCAAAATCCTGA---TCTACCCT------------------CTGCTCTGGC--AATGCC----TCTAAT-TACTGGGAAGATC---AGTACAT-----------------AAATATTGCCCTAC------------TGCTTATACCTCTTTTTACGAGaagctttttaatataaaa-----ttatacatacataatCATCTTTCTTTGACCCATAGGATGCAATATAATCCGCATGTTTCCCCAGTAAAAGGGTGTTGGGTGCATCAGACTTGATAGTAACATCCTTCTGTGGCGTgccctttcaaaataaaaagatgtgttttagCCACATTTTATATCCTGCTTCTTAGCATATATTCAACACACGGGAAAAAAGCAGTTAAATGT---ACTAATACTTAACCAAATTCAGGTA-------TTTTTCAGGTCTCAGAGTAATTCTAGAGCTAAAGCAG-TAATAATCAACTTTAGATTCAGAATACATGCCATCTCATCACTGACCCAAAAATTACCACCTGCAtttgatatttattctttcagtcaGTT---AAATAAACACT

a score=7519
s chr3           153922262 815 + 160039680 TTTTACTTCAGTTCCTTTTAAAAGTCCTATGTGTAAAACACAAATGGGTACAGCAGCCCAAGGGTTTGTACAAACCTGGAGAGTCAGAGAAAAATAAGTTAAGGTTAGCTTTATTGAATTATTTTAAACAAGACAAATAAAATTCTCGTTCAGTACTA---AGATTCCCAGAAAAGTTTTAGTTTTATAATGGGAGAATATGAATATAAACTTTTTACTCTTTTGTGCAAAACAAAGCAAATATAATCAAAATTATAAAATTAAC-AGTTCAGCACAGAAATGCTGCTATGTC--------ACAGTCTGAC-GTGTCCAA--TCTACCACAAATTTTCAGTGTTTATGTTAGAATCATGAGTTCT-----TCCTTGACAAGCCGCCTTTCCTGTCACTTGAAT-------GAACATTAAAAGTCCAGGGT------------------------GTTTTTCCATTTTAAGTGATCAAAGAGCAAACTAACACAATTCGGGGCTAAGGACCA---ATCATTGTCCAAAAGCCAAACCTATCT--AGAAAGGGTCACCAT---------AGAGCTGAAGACAGGTTCCTCCGCCATGGGAATCCGCTGCACAGATCCAAACTCGTCTTTGATCTCATTTCCTTGGGAAGACAGTAAAGCCCTTTTCCC---CTGAAGCAGCAACAGT--GCTTGGAGCTTAGTTACACGAGGGTGATGCAT--------------CGTTCA----------------------------ATAGTAATTCCTGTTAATTTTTATACTTTTCAATGTGCTCACGAGCTATGATCAGCCTCTGAATTTGTGCAGTACCTTCATAAATCTGAAAGATAAACAC-AATGGAGTTTAAACATCTG-----------------GATTCATTTGATGTCTC--------------AGCTCTACTGTAGCACCAAATTGA
s HiC_scaffold_1 140837750 865 + 233722169 ttttatttcagttccttttcaGAAT-------GAAAATGGCTACTGTATACAATAGATCAAAAGTT-ACACAGAGGCCAACagtcatataaaa-taatttaaggcAAGCTTTAGTATTTGA----AAATAAAGCCAATGAAATGTGGACTCAATAGTGTCCACATTTTCAAGAAATTCTT----TTATGAGGTAAagcta---------------------------------aaagaaaattcattccaAATTGCAAAATAAATTCCCTTGATACAGTAATACCATTAAATCTTTGGTAAGTTGTTTGACAGTATCCAGATCCTGTAGTGTTTTCTAACTGTAAATTTTAGAAC-----ATTCTCTGAATTCCTGATAAGCT-CAATTTCTGTCACTGGAAACTTACCAGAATTCTAAAATATTACTGTTATAGAGACACAGATGATACAATGGTTTTTCTAGGTTA--TGATTACTGAACGA-------TAGT--GGTGCTAAGGACAACATATActtttaatgaaaacaaatctgttttaaaaaaggaaaatcattgTTTGTACAAAAGTACAAACTAGTC---------TTAGAATGAGCTGCATAGATTTATATAAG---------------CATCAGAACAATGTTAAagccctttctcttttctgaagtACAGGTAGTCGACCATGTGCT-AGTTTTTCAAGAATTATGTATGTTTTACAATCTCTCGTTTACAGTGAATCATCATGTTTTTTAATCTCTACAGTAATGTCC--TAACTTGTATACTTGCCAATATGTTCACGGGCTATAATGAGCCTTTGAATTTGGGCAGTACCTTCATAAATctgcaagaaaaatataaagggaGATTAAATATCTACAGTACACAGACAGCTTGATTTATTCAATAGTTTGGATAATAGTGTTAAGTTCTATTGTAGTATTAAACTGA

a score=23663
s chr3           153929523  979 + 160039680 agATTACCTCCACTAGCAGCTTTCCAAATGTCTTCCTATCCAGGGCATACTTCGTGGCTTCGTCTAGAGCTCTCTGGGCTAGCCCGACAGCGCCAGCTGCGACCTAGAACATGATGAGCATCACGTGAAGCAAAAATTCACATTGTCATCAAGCCACACAGCTTATGGCCTGATTCC----------AGCGAAGGAGTACACAGACAGGAAGTGACGTC--------ACTGGGGCGGGGA--GGAGCGTGCTTGGGTTTATTTTTAAATTACAGGTAACGGCAAGG-CTGGGA------------------ATACAGAGGGCATGTTTGGCTTTCAGTAGAGCCTGAGTTTATCCCCATTGCCAATCAGCCAATCAATCAATCAGCTAACTGTGAGACTGAGGCTCACAGCCTAGT--GAGGTCA-----TTG-CTGTTTAACCAGGGA-GCCTTCCACGG-----ACCCAGGCTAAGTGAGTAGCAGAATACACAGTGATC-CACAACCAACAGGAATGATCAACACAAGGATGAA--------TTTTCTGGAATTCTAGCAAAGAATATTCTA-----GAGCCTGCTAAATTCGTTTCTATACTGAGCAGTGAAAGATGAACTACACACAGGACAAGCAACAATCTCCTCTCCACCATTACTAAAATAAGGTAGACATTTAAAAAGACACACACATACAATGTTAAAATAAACC--TAGTCGCTGAAAACCACAAAGGTCCCACAGAG-TGATCGG---------CTTACTGTAGGTCTGGTTCTATCAAAAGCACCCATTGCGATCTTGAAACCTGCTCCTTCACCGATTAACACATTTTCCTTAGGCACTCTGACGTCTTCGAAAGCAATTCCTCTGGTGTCAGAGCATCGCTGGCCCATGTTTAGTTCCTAGAGAGAAG---GTCGCA---TAAGAAACACTTAGGAGTTACAGCACTGCTGGTGTCAATCCTTCCTTTGTGCCTTTTGAATTTCCTAAGGCAG--------------GGCCTGTTGTGCCTGCCCCGTGAGTTGAGCTTCCATAGAATCCAAACACTCCTGT
s HiC_scaffold_1 140842513 1027 + 233722169 AAGTTACCTCCACAAGTAACTTTCCAAAAGTTTTCCTTTGTAGAGCATACTTGGTAGCTTCATCCAAAGCTCTTTGTGCTAATCCAATTGCACCAGCTGCTACCTAG-----GATTAAGTTTAT---AAGCAAAAGTTTGTGTTATCTTTAAGATATACAGTAAATAGTTAGTTCCCTAAGATTCAAAATTAAGGGCtatataacaagaaaataatCTATAGCTTAAAGTAAGACAAACACTGAAACATGCT-------ATTTATAAATCGTAAGTATGGGCAAGGGCTGAGATGTAGATCAATGGTAAATACACATGTAGCATGTCTG---------AGGCCCTGAGCTTGACTCC--TAGCACTGGGTAAAAAAA------AGGTAA-TGACAGACACAGGATCACAGCCAAGACAGAAGTCAGTCACTTGTCTGTTTAACAAGAGAAGCCTTCCAAGGGAAATATTCA-------tgagtgaagaaataaaaaataagcacataGTTAACAGGAATGATGAAATTAAGTGTATAGTATACTGCTCTCTGTAGATCTAGCTGAAACTACATTAATTTTGCATTtgctaaaattatttctataataagcagcaaaaa--gaattataaatataa-aagtaatactATCTTTTCCACCCTTACTaaaataaggt------ttttaaaaacacaagcacacaatgttgaaataaaacattatttaatgTAACAGATGAAAAATCTATAAAGATTATCAATTCCTATTACTTACTGCAGGTCTCGTTCTGTCAAATGCTCCCATTGCAATTTTGAAACCAGCTCCTTCACCAATTAAAACATTCTCTTTAGGTACTTTTACATCTTCAAAGACAATTCCTCTTGTATCTGAACATCGCTGGCCCATGTTTAATTCCTAACAAGAAAATTATcgtattttaaaaaacacct--ttGTTTCATCAGTTTTAGCTTTGGTAATTGTTTGATGTCTTTGTAAGTATTaaaaacagaggcaaaaatcTACGGCCggtaatacttgttttataaggaaaacatcaataaaatatgGATACACCTAT

a score=13264
s chr3           153932821 602 + 160039680 GGTGTTCTGCACAAAGGTCCCATCTTTCAAAATGACTT-GAAAGATTT-----TTCAGTGACATGTAAACTATGTCCCCATATCATCAAGACACAACCAGACTTTTGTTCCAAGTTAG-AAGTATTTTCATCAAAGGAAAC--AGGTAAGAACCTTGACATTGACAGTTGGGATTGTACGTATGGAGGTTAAGTGGAAGAAACACGCTGTTTACCTTTTTTCCAATATGTATTCCCGGGGTGTCGGCTTCCACAATGAATCCAGTAAAGGCTTTACTAGCGGGTACTTTAGGATCTGGGTTAGAACGTGCCAACAAGAAATACCTAACGCACACAAACACACAAGGGTGGCAATAAGGATGACGAACAAGACTCCTTAACTACTATCTCAACTACCGACCCCA----CCCCggtattaccatccccacttaacagaagaggacatggagaatcagttgggtttcaaagcttgcacaaATGCCAATTTTCCTGTGTGGACAGACTGATTCATCCA------TCTCTCTCTCCACTAAGGTGGTATTTGAGTTTGGGGGAGGGGGGAGTATGAGTTATTAGTAAAGGTTCCTTCTGC----AAAGAGAGTATGAAAGTAAAGTATGT
s HiC_scaffold_1 140849959 573 + 233722169 GGTATTTTG----AAGGACCAATCATTCTAAATAACTTTGCTCAATTTAAAACTTCAGCAACATATAAAGTATTTCATCTGAT-atcaaaatgc---tttatttttattccaaCTAAACAAATACTTCCTCTAAAGGATGCCTAAATAGTAAT-TTGACATT--TAGTTAGAATAATACCTGAGGCCTTGATCACTGTTAAATAcacattttaccttttttccaatCTGCACTCCTGGGCTATCTGCTTCCACAATAAACCCAGTGAAAGCTTTACTTGCAGGAGCTTTGGGATCTGGATCAGAACGTGCCAATAAGAAGTACCTGATGCAAACACATACATGATGATGGTGA--------GTAATCAAAG-----TGATTGCTGTCTCAGTTAATCCGCCCAATACCCCTATTATTGCTACTCCCATTTTACACACAAGAAAATGAACAATCA----GGTTTCAAAACTTGTGAAAGTCATATACCTACTATTTGGAGGAACTTGTATTTCCACCAAGGTCTATGCCTTAACTA-----TTATTT------------------AGCATGAGTTG-AGGTAAAAATTCCTTgtgttttataatataatatgaaAAGAAACCATAT

a score=13791
s chr3           153936080 396 + 160039680 AGATTAGCTATTTTTACTGCGCTTTACACTTTAGACTT-CTTAAATTAATCTCGAAGAAATAGCTCAAGGGCTTAAAA-TAGTTCATGAGTCACCGAGTTATTTATAATCTCCT----ATGGACCTCCCAGTTTTAAAACTATAGGTTGTTTTAAC-TGAGAAGGCTTAATAATAAAAGAAGAAAGGGAGACGTGGAAGGTACAGTAATGA--AGAGGCCTACCAGTTGGCCTTTCCCCCGTTGGTTATCCACATCTTCTGGCCGTTGATAACATACTCGTCACCCTTCTTCTCTGCTTTGGTCTTAATGGCCGCCACATCAGAGCCTGCGGAGGGCTCTGTCACACAGTAAGCCTTGGATATCCAGACACAAGaaaaaaattaaatgttaattattaaattGTG
s HiC_scaffold_1 140851130 379 + 233722169 Agagtaactatttttatt-----ttacaaattaaactTACTGGAATTAATCTGATATAAATAATTCAGGGGCTTAAAAATAGTTCGGTAA------AATTGCTTAGAATCTTCTTTTCATgaacttggc-tttttaaaa----aagtggtttaaaaataaagattctgaacataaaaataattaagaaata---------taCAAAGATGGCCAAAATCATACCAATTAGCTTTTCCTCCATTAGTGATCCACATCTTCTGACCATTAATAATGTActcatctccttttttttctgctttcgtCTTTATGCCAGCTACATCAGAGCCTGCTCCAGGTTCTGTTACACAGTAGGCCTTGAATAtatggaaataag-agaaaactaaatGTTAAGTATtaaattttg

a score=12810
s chr3           153937692 998 + 160039680 ACATACTCACACACATCATTGGCTGCTCCGTCATCCTCCCCAAATACTTCTTTTTTTGTTGATCATTTCCAGCAAGAATCACAGGCATTTGCTACCAAGGGAGATTAACATTAAGACGTCGAGATATTTAAATTAGTTACGTAGATTCAGAAAACCACAGTTCCACGAATAAGAACTACCTGCCTCCCATAAAGAAGTAAACTTAT-GAACTGGCAT-----TTGCTCTGAACGAAACGAGCGA-----------GAAGAACACAGACTAACATGAGCTTCTCC------------------------TTGAGTTATAGGTGGGTGGGGCTGCTTA-GTGACACACAAGCGTGGTTGACAGTAAGGAGATCACAGA-------------------------------TTAAATTTAGGATATGTGACACGGTCTGCACGACGAGCAGGCCTCCTAGATACTGCTCAGTTCATTTCAGCGTAGTAACTGAGCAGCAGGCCGAGGGGATGGCTTCCGAGCTGCCGCCAAAGAGTACAGTTTCCTCACAAGGACACCCAGAACGGCCAGTATGGGAGACAAGTGAACCACAGTGATCAAGCTATAGAATCACAGCTCCAGGCCGGCAAGCCAGTCTTCCTT-----ATAGTTCTTACAGAGATTAACCCAGCTTCACGGTCGGTGTCTCATTAACAGCCCAGGTAAGCGATTAGCATTTCTCAAATGGTAATTTTACTTATTTTGTACATATGCACACATGtatgtcta-tgtatgtgtgcacgagttacagctct--------cttctggaggccagatgacaccttgggggagtccgtagtctccttccatcacacgggccccagaggtggaactcagaccatgggggcgcctttacccactgagccattccaccagccccATGATAAGTGATTGTCTTAGTGACTTACCCCCAAAGAATTTGCTTCAATAGCAGTTTGCACCCCTGTACACCCATACGCCAACTCTTCGGTAATTAAACAAGCATCGAACGTTCCCAGGCCAAGGCCACCTACAGCGTCAGAGTGTAC--GTAGCACGTTATAATAT
s HiC_scaffold_1 140854642 925 + 233722169 acacactcacacacatgatTGGTTCCTCAGTCATCCTTCCCAAGTacttcttttgttgttgattATTTCCAGCAATAACAACAGGCATTTGCTGACAATGAAAATTGACATTAAAAGATCagattatttttataacatatgTAAATTCTGACA-CTACAACTGAAATCAAAAGAACTACC-----CCCACCAAAGAGCAAGTTCAAAGAACTTGTATGTATTTTGCTTCTAAgttaaaaagccaaaaaccatGAGGAAATACATGTGCTAATCTCAGTATATACATAttaagtatatacatatacatattaagTTACATGGAGGACTTGCTGGTGATGCAACAGATAAAAGTCTACCACAGTAAAATGCTCAAATAaagcattacatttttttttttttataaagcatTACATTTAAGACATGTGACATG--CTGCTC-ACCAACAAGCCTCC----------------CGTTTC-----------------------------------CTCAGGACTGCTCCCTAAG-------TTTCACCAC---------------TGCCAGCAGGGGTAGCCAGACAACT----TGATCAGCTTGT-GAATACTGGCTTTAGGCC----------TTGCCCTTGGCTAAGAATTCCCACAG---------CAGCT--ACAGTCAGAG---CAACTACAGCCAAAGTA------TACAGTTTCCCCACAAGGACTGTTAAGAATCTGGGTAATGCAGACACCAGAACAAGAGCTGAACAAGCCTTGGAATCAAAACTCCAGGCTTTACTGCTGAAgcttatat----tctttaaaaaaactgttttgtCAATCAAGGGTACTTAGCTACAAGGTGAAG---AGAACAGTAGGA--------------------------------------AACTAGTTTTCTAAGTAACTTACCCCCAAGGAATTTGCTTCAGCAGCAGTTTGAAACCCTGTACATCCATACGCCAATTCTTCAGTAATTAAACATGCATCAAAAGATCCAAGTCCAAGACCTCCTAtggtttcaaaatgttttaaaagccaATTATAATAT

a score=15144
s chr3           153938685 580 + 160039680 AATATGAAGAACAACTCAATAAACTCGAAACCATCTAGACAGGGAGA----TGCCTGTGCTCTGTGCTGAGTGAGGACCAGGCTCCTCCGAGCAGGCAAGTTCTATGTTGCCAATAGGGAAACAAAGGCAGAAAGCCTCTGAATGGCAACAACACTTTAGAGAAATGGGCGT-----------TTTCATTTTTGTAATTTTCGGAG-----CAAACGTGTAGGAGGCTTACCGCAACTTTCCGGAATGTGCGCGTTGATCAAGCCGAGTTCCCAGGCTCTTTTGATGAGAGGGAACGGGTACTGAAAG----GAGAACAGGTACAGCACACCTGAG----------CCTAGGCAGGCTGGCCACCCAATCTCCTGGCCATACACGA-----CTTCCCCACTTCCCCGGCAACCCG---ATACCCACCTCCCCGCTTTTGTCATATTCCGGGGCGACGGGGATAATCTCCTCTCTGGCAAACTTGCGGGCAGTTGCTTGAAACTCTTTCTGCTGTTCCGTCAACTCTAAGGGAACATTATTTTGAGAACATCAAAAAGAGTTCATCAACACTGAGTTGAAGAGACAAGGCCCATGAAGCTGTTCTGCAGAGGTTTCTATCTAT
s HiC_scaffold_1 140856136 596 + 233722169 AAAATCAGGACCAA---AGTAAGATTGGAACcagttaaaaagaggaaaaagtgccTGT---CAGTGTTGAGTA-----CAGGCATTTAAAAGCAGGCAAATATTATAATCTGAATGGGGAAGCACCGAAAGCAAGCCATTTACAGTCaacaaatgtttaaaagaatgagtaaagtttcatatatttctttttcatatctaTTGGGGGATTAAAAATGTGATGAAAGATTACCACAACTCTGTGGAATATGTGTATTCATTAAACCAAGCTCCCAGGCTCTCTTAATTAGGGCCACAGgatactaaaagaaaagaaaaagggaagaacagagttaaaatgtatttatcatttaAAGTTTGAGCACATGATCTCATAAA-ATATTTGAGATGTCTTTCTCATT-------AAATATGTGTATACTTACTGCGCCAGTTTTATCATGTTCTGCAGCAACTGGGATTACTTCCTCCCTGGCAAATTTACGAGCAGTAGCTTGAAATTCTTTCTGCTGTTCGGTCAACTCTAAGGAAGAGTTATTTAGGaaacattaaaa------cataaaaaatgagttGAGAAAAGAAGTCCTATAAAGCCA-TATGTAGAAATTTGTAATTAT

a score=7688
s chr3           153941784 247 + 160039680 GGAGCCAACTGTGGGCGGTG-TCTGCTCCACTCATCAACAGACATCAT----GTTACAGACACAGCCCAGGCAGAC----CTTCAAGTCAA-----AGGGAGGGACACATACCAAAACTAAACCCTAATCCGGGCTCCTGCTTGTGAGCCGCTTTCGAGTGTTGTGTTCGACACTCAAAATGAGAAACACTTCTCAGGACCTGGAAAA--------AAAATAGATATAATAAGTAAA-----CTTAATAACCTAA--ATAT---CAACCAAATGCAAAA
s HiC_scaffold_1 140858901 279 + 233722169 GAAAACATCTGTGGATGGTGATTGGTTCTACTCTCTGAATGTCATTATCAAGTTTACAAACACACTccagaaatatgtattttaaactcAACAGACAGAACAGAACATATACCGAAACTATATCCTAATCCTGGTTCATGTTTGTGAGAAGCTTTTGTATGTTGTGATCTCCACTGGAAATGAGAAATACTTCTTAGGACCtgtaaaagacaaattaaaatacatttgataAATTAAGAATCCTATTtaacctgatgatataggcaactcaatttaaaa

a score=12954
s chr3           153972555 1259 + 160039680 TAGATTGTATGGGAAGCTGTACTTA-------GGAACAAGAAAAGAAAAATGTGAATTGGAAGTGCTTTGGACTATTAAACCACCTCTAcagtgtagatttaaactcatggc-----------------catcctcgtgcctctgtctcccgaatgc---ttggatcccagacACTAGTCCCGCATCTGCCACTCTTTTAAAGCCC-TGACTCCTTTATATTTTCAGATTAGCCCTAAACTTTAGCTTTTCCTGTTGCCTGGGGGCAGTAGCAGGATATACCAACCTGCCCCTCGTTAGCACCCAGGAGG-GGACAGTTC--CAGGGAACTTGAAACTTTGCCA--GTAGGCCTCCTAACCAGAGCGAGAAA---------GAATGGGACCCCAGGGCCTAAGTTTCTGTAGGAGGTTAAGAAATCAGGGCACCAACTCTAACCCAGATAGGCAAACTTTATTTGCCTTTTCCTGGCAGCTCAAGAAGCGATGCT-GAACTCTCAAAATGAAGAGCCTTGGGACCCGAGCAAGGTCACCTGC--CAGGGTCTGGTGACAGGCCATTTGTGGGAATTCACTTCTCTTTCCCTGCAGGTCCTCCAGCTTAACATCTTCCCTCAGGAGGACCAGAAGTAGCTGACACTCCAGCGCATCGCCCAG------GTGTGATTCAGGGT---------CTGCGGAGGAGGACTGCTC------TTTTAGGTGATGGACAGATCCTGTCTCAGTCAGCTGGGGACCCCGGTGCCCTTGAGAAACAGGAATGCCAGACTGGGGTTCAGTCCAACAGCCCCCTTGAATCCTGCTGACTG---------------------------------GAATGT----CCCTGCCGTC---------CTCAGCCGCTACCAACTGTCGCTGGACGAGGGTGCCGTGC-CAGGGCTGGCGGCGCCCGTGGGACGGAGGGCTCGGCGAGTGGGGAGGGGGACGCGTGGGGAGGGCGGGCGCGCGATCGAGGGAGGTGGGCGCTGGGTTGGCGCTCCGGGGACCCGGCGCTGCGC-CTCCAGTAGAGGCGCCGCACAGCAGAGGGGGCCGCCGTGGCCGCCGCAGAGCGTGCGGGGGCTCGGTCTGGCGGCGGGCAGCTGAGGGGCGACTGCGCCCGCGCAGCAGAGCCGAGTGGAGTGGAGCGCGCAACCTGACCGCCGCCGCCTGGCATATGCCATCACCGCCACAAAGAGCTCGCTGAGCTCAG-GCGACGG----------------------------AGCTCCCGGGGCTGCGCGGC-ACAGGAGGCTCTGCGCGGCGGACCCGGGGGGGAAGGGACCAGACTGAGGATGGCCCGGAAGAGAAAGCCCCCCAGCAGCCAGGGTGAGTCCTTCTCGTC
s HiC_scaffold_1 140890131 1234 + 233722169 TAGACTGGATTGGGAACTGTACGTATCTaacaggaa--ggaagagaaaggtgtTAACAGG--GTGACTAGGAATTAGCAACTGCAT-TATGATGGACACTTAGTTCCAGTGCAGAAAAATAGGCTtttgcctcctcctgcctcagtggc----aTGCCAGTGGTAACCCCTACTCAACCCCTGT---CACCGTACTTTTAAAACCCGTTGCTGCTTTACATATTCAGGCTAAGCTTCCACTTTTGCCTGCCCAGT---CTTGGAACGG--ACAGGTT---CCTGCTTCTCCCTAATGGGCACTGGAGAGGAGGACTGCTCATCAGGAAGAGGGAAACTTTCCCAAGGCAAAAACCTTACTCAGAGAGAGAAGCCAAGAGGCAGATGGGACAC-AGGAAGGAAGGTTCCACGGAAGGCCAAGGGAGGACTTCTCCCGTTT----CTAGTTACGCAAATATCAGAGGGCACG-------AACCCTAGGGGAAGTACTTGTGCTCTCAGG----------TTAGGGCCAGCTCAAGGTCATCTTTTGCGGCGTCTGGCCGTGGGCTGCCTCTGCAATTTAATTTCTCTCCTCCATCAG--CCACCAGCatcctctcttttccc----------------ttctccacTCGAGCGCGCCCCTGGGCTCACTGCGTGCTTGAAAGTGGGGCTCGCTGGCGGAGGAGGGTTGTGCAGGGTAGCTCAGG-GAGGGCGGGTTCCCATCCCAGTTCGCGCGAGTTCCTGG----CCTATGAAGCTGGGA-----GCCTTTGGTGAA----------CCCCCTGCGTCCCGCCGCCTGCGCAGGGGCTGCGGAGCACGAGGCTGGCAGGCCGAATGCGGGCTCCGGCCAACTCGCGCAGACCCGCCCGCTTCCAGCCGCAGATCCCC-ACGCTCCCACGCGCGGGGAGGGCGGCCCCGACGGGACAGCGG--------AGTGGGGAG---------TGGGGAGGGCG----------------AGGTCGGCGCGCGGCGGGCGCTCCGGGGACCCG-CGCTGCCCGCTCCAGCCGCGCGGGTGCACGGCGGCGGG-----CCGCATCCTCGGTCGCGCGATCGGGGG-----------------------------------GCTCGCGGAG---AGCCAAGCGTCGCCGAG-GCACAGCCC-----CGGCCCCCCGGCAGATGCCATCACAACAACAAAGAGCTCGCTGAGCCCCGCGCGGCGGCGACAGCTCGCCCGGAAGCCGGGGCGCCAGCTCGCGGAGCCGCGCGGCCGCGGGAGGACGCGCGCGGGGGGTGTGGGAGGCGCGGGGCC-----GAAGATGGCCAGGAAGAGGAGGCCCCCCAGCGCCCAGGGTGAGTCCCCCGCGCC

a score=16425
s chr3           153974246 2580 + 160039680 CAAGTTCTGCATCCATTTTCTTAATCTTCCCATCC--CTGGTT-GTCTGGCTGTCTCTCTCCCC-----------ACCCCAACCTATTGTCAAGGG--CCTTGCTACTAGCCAGATCCTTGT-GGGCTCTTGT--CCAGACGGGCTTGGACTCCAACTGGGTCATCCCCCTGTTGCTTCTTTGGAAATACATTTGCCAAAAGTTGGAAAGTTGAGGGGTGGAAAGGATGCTGGAAGGTTGTGGGAAGAGCTTGTTGCTAGGGTAACTCGAGGCACCTCTGCTCACTTTG-GGCGAAACCAGGGAAAACCTGCCTCCTGCTTGGCTCCCATCAGCCCTGGGGAACA-GGTGCGCGGAGCGCAAACTCAGCGAGGTAGTGACTCGCT---GCCAGATCCTTCCCTGGCTGCAGCACTGGGGACAGAGGGAAGGGGGTGACAAGGCACCAAGCAGCACGAGAAGGGCATGCATATACAGACAGGAACC---CGAGGGTTGTTTCCAGGAAGAACGATCAATGTTTAAAGTTGGTTTGCAACGCAGTGGACCTCATAGCCTGTGGGACAGAGACTCCTTACACC--CCTTGGGGTTATCCCTTGGGGTC----ATCCCGCGGTGAGAGCTAGGCCTAGGATG-----AAATGTGTTGC--------TTTGGACCACA-GCAGTGCAA--GGACCTTGGGTTTGCTTCTTGTTCTT-----TTCCCTAGTTTT-----TGC----------------------------TGGGGATTCCAGTTTACTTAAGTGCTCT-GCCTGGATGTCAG-----------GATTTTGAATGGCTTACTGGAAAGGGTTAAAAATCATCATCCGACATTCTCCA-GAGACGTTCCTACAA-ACACTGTGGGTATCTCATTGTTGAAACTGTCACCTGCTGACAGCAATT---------GTACTTAAATGACTTTCCTTAAAAGCACTGTGACTTCTGGTCAGCAGCGAGGCCTTAGACCTCATAACCCCGCCCCCATCCCCCACTGATGA------GTCTTTCAAGGCCCTCT-GTGAAGGCTGACAGAATTTATCCATGC-AAGACACTTTTCTCTCCTTGCCACATAGCAAAGAATTCGTGTAACCTCCGATTGACAGGGTGCACACTCTACA-----------------CTGTATGAAGCCATATGGCACCACCGAGCCAAACAGAAGGACTG--TTTCAGCACTGCTGATGTTGCTCTCTGCTGGCAGGAAGGCAGTTCTTACCCACCCAGACCCTCGCAGACCTTAAATGGGCCATGA-AAGTGCAGACTCTC---------------ATTCTACAGTACATGCTGGCTGGGAAAAATCTCACTCTAGGAATGAACCTGCTTGGCCAAGGCTCAGAAAGATGCAAGTGAGGCAGAAGGAATGACGGGGGAGTTAACAGAAGAGATGTGTGGAAAGACACAGCCCCTTTCTGctccctcttcttcctcactccccttcctcctccctcttcttcctccttctcctccctcccttctgtccctccctccctcttctccctccctctcccttctccctccctcccttcttcctcccctttcttcctcctccccctcttctccctcATCCCTTTTCATCTTCCCTTCCCTCAGAACAAGCCACTTTGGTTTTTGTCTGTCAAGAAGGGATAACCCTTTCCAGAGTAAATCTAGTTTGACAGTGAGATGCTTGCAGGACAAGATTAATGGAA-CTTGTCATTTACACATTAACTGTTGATCCAGAAACACAAATAATCAGACTTTCCCAGGACACACGGACCCAAGAAATTTCACCACAGCTTTTTTTAAAGACGTGATTTCTTCACAC--AGCTTTTCTGAAAGGGGAAGTTGGC----TCCGGTGCTCTCAACTCCTGGTTCTC------CCCGCTAATGATGAAGTTCTCGCTTTCATTTTTGGA---TTTGGAGAAT--------------TTGCTATTTCTTAGAACAAAAGCAG--CATTAAACATCCTTTGTGTTTCAAGTCAGCAGGATTTGT--TTGCCATCTTAGACGCAGATGGACTCAAACCTGGAAAGTTGTcatccatacacccacgttacgtctgtctgtccatccatctgtccatccatctatctaccatctatcttcttgcttcttgagacaaggttttactatgtaactcaggctggactcaccatatagccaagtctagccttg---aactcaaggcaatcctcctatctcagcctcccagctgttgggattacaggttgggaactgggccagtcttccgttttacctttcaagggaagaactGAACAAAAGCCCATGGCTACAGGCTTACTGAGCTGATGTAAGACCAACCACATCCTACCATTCACCTAGTAGAAATGGAAACGTGTAGGCTTCTTCATGGTGGTGGTGGTGGGGTAGGCTGCTGGA------GTGCCGAGT------ATCTTAGCACTATTCCCTTGCAGTACTGGCTG-CCTTTTATCCGAGATGCTTCTCTGCTCTGC--CTTTGGGGAGAAGTCA--TGCTGGAGCTTTGGATAGCCATGGTGCCTGCTGACTTCTGGAGTCCTAGCCATAGAGATGTCGCATCTCCATCATTTGGAGGCCAGGAAGAGGGAAA----------TTTATATGGACAGAAGAGTCGGG-CTATCAGCAGGCTTTACCAGGGAAACAGTAGTGCTCAGTTCTAATCTCTCATCCTAAGAACAGTCTTTCAAAAGGGCAAATGGAATTTT
s HiC_scaffold_1 140891820 2303 + 233722169 CAAGTTCCGCATCCCTTTCTCTAGCTCCCCCAGGAGGCTGGTCCATTTGCCTTTCCCTCCCCTCGAGGGTCGGGGACACCGGC-TGCCGCCCGGGGGTCCCTGCAGGTCCCCACAGCCTTCCCGGGCTGTCGTGGCTAGGTGAGCCGGGACTCGGGCTCTGTGGCCGCCCTGTTGCTCCTCTGCGTCCAGGGCTTCCGAA-GTTGGAAAGTTCAGGGG-AGAAAGGTTGGCAGCGGGGACCAGGCAGAGCTTGTTGCTGGGGTGACTCGAGGCCACGCCGCAGAGTCCGAGGCGGGACACGGGA-------------GCGGGGCGTCCGT-------GGGATATATGGGGAGCGAAGC-TGGGTTCTGGCAGGGACCGAGCCGCCCTAGCCAGGGC-GACGCTGCCTGCAGCGC----GGCAGAGAGATGAGGCCGCCG-GGCACT-----GCGCGCGGGGAGGACGGCTGTGCATCCAGGAACCGACCTGGGGCGCAGCCGAAGAGTGAGGGGCGGCCTTTGAAGATGGATCACCCCAC---GGCCCTGCTGGCCTGGAAGATGGAGACTAGTGACGCCAGCCTTGGGAT-ATCAGAAGAGATCCGTGGCTCCGAGCTAAGAGCTGG----AGGGTATTAGTGAATATATAGCAGGACTGACTAGGTCTCCAAGCAGCGCGCTTGGTTttggcgtttttttttttttcttcttgcttcccaAGTCTTGCTTGTGCGAGCTTAGCTACACTCTAGAGGTCACTATGGGGACACAACTTTATCTTGTGGCTCCAGCTTGCAATTTAATTGTTGCAGACGACTCAAAATAACTTACTGGAAAGGGTTAAAAGCCGTGTTTCTTAATTCCTTGCAAAACCTTACTACAGGACGCTGGGGATTTTTTCTTCCCGAAACTACAACCTACATACAACATTTCATTGCAGCGTATTTCCACCGCTTTT-TTAAAAGGGC---------------------AGTCTTTAAACCTCTGAT-----------TCCCCCATTAATTAATACAGGTCTATAGAGGAAGACGAGtaaaaaatgagagaatataATCATTCTCAAACACTTTCCTTACCAtgatatataa-aaaaaatgaGCCTTAGACCACGTGGATCTGGTGCATTAGGTACAGTTTTGGTTTGCTCCTTTTTTATGGAGTCGAGTGGCAC--------------GAAAGATTGGATTTCAGCAGGGCTGATGTGCCTGTCCGTTGGCGGGAATACATTTCAAGCCCACCCCAAACCTTGCACATTGTAAATGGTCCGTGattagtacatttttttttttttttttttgcagttttacagTACATGGCAGCTGGAGACAGTCTAACCGTAGAAATTAATGGTTTTAGTAGAAGCACAGAAAGATACAAAGGAGACCAAACTAATGAGCTCTGAGCAGGTGTCCGATATTTGGTGAACAAGACACCTTCTTTGCACTCCTGCCTCCCCCTAAGACAc--------------------------------------------------------------------------------------------------------------------------------------------------------------caagaaatttttg-ttttgtatgtcaAGACGGAATcgtattttcttaaatatatttaatttgataGTGATATA-TTGGGGAATATAGCTAATAGAGTTTTGTCATT---------------------GAAGTGTTAATAGCCAAGCT---CCA--------AGTCTCAAGAAATTTCATTGTAA--TTCTTTAAACATAAGGTTTTCTCATGCTatgtttttcttaaagaaaaagttaCCTTATTTTGCTCCTATTGACTTGTGTTTCTCTCTTCACCCCCTAAAGTTAAA--------------CTTGGGAGTTTTTAAAAGATcagttcatttattattattattttttagaacaaaaaaaatccttcaaGAATCCTTGGAGTTTC-ATTTAGCAGAATCAGTTGTTGATATTTTAAA-GTTGATAGAAGCAAACCTAGGAAGCTGCAATCCATTGACTTACCTAG------------------------------------------------TTTTGCCTTTT---ATGAGG---------------------------------------------GCCGTGGGTAATTTAAGGCCAGACTCACATTCC--------------TGGGCT---GGATTGGGGTGTGGGGCATCCCCAGGATT--------AGAGGGAGGACT---------CCCA----TACA---TTTTGTAGCTG------------------CCCACAATT---------------------TCTAGGCTTTTT--TGGATGT----------CAGGCTACTGGGTGAACTTTGTTGGGTAATAAAAGCTTAACACTATTCCA-CACTGCATTGATTATCCTTTTATGGGAGCTGCTTCTCAGCAACACTGCAGTGGGGACAGACCATTTATTGGATCTTGTGACAAGGCAGTCTCTCATTGACTTGTAAAGTCCCCCCAGTAGAGGCTGCACATCTATAACTGTTAGGAattggccaaaaaaaaaatgcattttcttaATGGGGGCATAAGAATAAGACCTGTTGGTGGCATTTTTCAAGGAAATactaacatttatttataat-----atctaaagGACAGCTTTTCAAAAAGGCAAATGGAATCtt

a score=10326
s chr3           153982752 493 + 160039680 ATGGATCTTCTTGAATGTTCTCTCCACCTTAAACCTTTCTGATTAGAAGATGGCCTGATATTTAGGGATGAT-TAATTAATGACAGATTATTTTAAAGCCCTTGAGCATCTGTTCCCACCTCCATACTGTCTGTTTCTTTATCA----------ATGAAAAATA----AAGGGTTCCTGGACTTCCAGGGCTTAGTGTATCTCTCACTACCTTTCCTCTGTCCTCAATGGGGCTCTTTGGGGAGCAAGGCAAAAGAACCTCAAGCCCGGAGTCCCCCAGAG----TGGGGCTGGCCTTAGTGACACTGC--CACAATGTGTTTGTGACATCACTTTATTTTCGTAGTGGTGAGAATC----------CGTGCGTTCGTTCACCATTGAC--TTCTTGAGGAGCAAAGC-----AGTGAGAGGTGAGTAGGAT-----GACATAG----------------AAGAACAACTTATGCCTGCAAGAGGTGTACCATTTACAAGTCCAGAAACACAGACTATACATAGGTGTATGTATGGGCCTACAAACATGTGT
s HiC_scaffold_1 140895713 510 + 233722169 ATGGGTTTGTTGGATGATTCTTTTCACCCTAAACATTTGTGAGTAGAAAATGCCATGATATTTAGGGAAGATATAAATAAT----GGTTATTTTAAAGCTCTCCACTGCCTCCTTCCACCTCCAAATGGTCTGCTTCTTTGCCAAGGGGTGATCATGAAAGACATACTAAGAATTTCTGTACCTTTAGGGCTTTG-----CTAACTCCACCCCCACTTTGCACTGCAAGCAAATCTTTGGGGCT---------AGAA----AAGCTGGTAGTACCTCAGAGACTATGTCAGTGGCCCAAGTGATACTGTAACACAATGTGTTTATGACATCAGTTTCTTTTCACAGCAGTGAGTGTCATAGATGGTTAGCAAGAAGACTCAGTATTCACAGTTGCTGA----CAAAGATACAGGGAGAGAGATCAGTGAGGTTGCTCAACAtagtctgtattttttaaaaaatgaagattatTACTTGAAGGTAGTGTA-----TATAAGTCAAGaaatac-------acatatgtgtgtgtgtg----tacaagtgtGTAT

a score=17192
s chr3           154000742 529 + 160039680 CTATGTGCCTTTACGACCATCTCATCCTTTTG---------TCCCTTGAGTTATTATAGGAGCATTTTCATTATAATTTTGAAATTACATTTCCCATTGCCGACAATGCAGCATTTAAATTGTGGCTTGTAATAGTGGCATTAG-TGGTTGGCATTTTTATTTCTTTATGGTAGAGGACCCAAATGACTTAAGCCTTTTGAATATAAGCCAGTTCATTTAGCTAGGTCTATCA-TTTTTTAACAGCCGAGATTCAGGGTGGAACAGTTTTAATAGACTCTCTGATTGATTTTTAGACAGTGAACTTTGGGTTTTGAAAAACCTCGAACATACAGTTCAGTATAAGATCTGAGGCCCTCTTCTAGTCCCACCTCCCAGTTTCTCTTTTAAGCTTCTATCTCTAGGGCTCATGTTTCTTGATTCTCTTTCGGAA---CAAAGATAAAACCACCAGAGTCTTAGATGTTGAATTTTGCTCTTTTCATTGGTCTTCAGGGACTAGTCTGCTTTACTTTTAAACAGACAAAACTGAATAATAGCACTT
s HiC_scaffold_1 140910949 486 + 233722169 CTATATTTTTCTAC-AGCATCTCCTCCCATAGGCTACCATTTTTTGTGAGTTATTATAGGGGAATTTTCATTATAATCCTGAAATTACATT-CTCATTGCTGACAATGCAGCTTTTAAATTGTTGGTCCTAATAGCGATATTAACTAGTtggcattttcattattttataccaGTGAACCAAAGTGACTTAAGCCTTTTGAGCACAAGCCAGTACATTTAGCTAGTACCATCAGTTTTTTTAAAGCTGAGAGAGAATGTAGAACAATTTCAACAGAGTC---------------GATGATGAACTTCGGTTTCTGAAAAAGCTTGGTCAAACAGTGTAATGAAAG-TGTTAGGTTTCCTTc--------cctcc--atttctttttaaagactc--------atACTAAtgctttttgattcttttatagTAATGAAAAGATTTAATCTCTGA------AGGTGCTGAATTTGACTGTTTTCATTAGCCCTTGGAG---------------TCTTAAATTGGCAAAACTGAATATTAccattt

a score=12572
s chr3           154005012 595 + 160039680 CTAAATTATTCCTTGTTTTCCTTCTGGGTGGTTGATTGAGATAGATGGATTTGGATTCCTTTTTTTTTTCTTCCATTTCTGTGAAGATGAATGAATTTTGGCTTT--ACAATTTTTCTTCGTTAACAGTCTGTAGACTCATTTCATGTGTATCCATTTGTGTATCCTGTCTCCTCTAACTAAGTGTCATCTTTTAAGAACATTTCCTTCATCTTATGTTCTTTGAAAAGCCTTCCTAGGTTTTAACCTTACACATGTGACCCTCCACAAGAAGTGTAATTAGTGGGAAAGGCACCTATTAAATGCATTAGGTCTGTGAAAGGAGAGCATTTGTTTAAAATTCATGAGAGAAAGGCACACATTTGTGTAAGGAACAGGTTAGGGGGAA--------------TCTGCTCAGTGACCCACAATTCATTCTTACTCTACGTCTGCGGCTGTGAATGTCTACGTCCAGGCTCGATCCGGCTGATTAGTCAAGGAGATTTTTGTT-----GTTGTTtgctgctgctgctg--ctgctgctgctgttgTTCTGAATTG----TCATTGCCTGTTATCCAAACAGGACACTGTTCCCCTGGTAACCTGATGGTCATAATTCAGAGTCCA
s HiC_scaffold_1 140912269 602 + 233722169 CTGAATTAATCTTTTTTACTCCTTTGTTTGACAGACTGAGATAGGCTGAGt-atatctatctatgtatttGTTCACTTATTTACATATAGATAAATTTtgacttttaataattttctttttttaa-agtatatag--tcATTTCAGATccattcttttgtatat----tttcatct--ctaAACCTTGCCTATTGAGAAAACTTCTTTAATCT---GTCATTTCAAAAGCTTTCCTAGGTTTTAACCCACTGAATATGACTCTTGACAAGAGATATAATTAGCAGGAAAGACATCTCTTACATGTACAAGGTCCATGGAAAAAAGGCACCGTTTTAGCATTCACGATCAAGATGAATGTATTAGTGTAGGGAAGGGAGTGAAGAGAATTCTGTTGAACGATTTTGCTCAGGGA-ATAGAATTTATTCTCATTCTCCAACTCTGacta-aaatttacatattttagtcAAATTTAGCTGATCATTCAGGTATTTCTTTAATTCTGAATTACTTTCAGATGTCATTGAAATGTAGC-----ATTTTCCCAATTGcgttccattctctctctctctctcttttttttttttttttgataaactAGTAGTCGTAATTGAGAGTCCA

a score=10114
s chr3           154008637 321 + 160039680 TGCCCACACCAGTTTAAAGTATGTAAAAATAATTAAAACTTTCTAATAATTTTTGAGTATAATTACTATAGACATCTGCTACCTTCGTGTTATAGATAAACAGGGATGCTAATTAAAACAGCATGAGTT--AGTTGATTCCATAGAGCCATCTGAATACTGTCTGAGTATCTTACTTATAATCC-AGTTATATAT--------GAAATATAAACCATCCACGAATGACAGAGGGAGATAATGGGATGCTAGATTGTTTTT-AAATTTCTGCAATTTGTTATAGTGCTGGAGTGAAATTC----AATTAACTATTTAAACTTG-TTTGCTAATAACTTT
s HiC_scaffold_1 140915635 313 + 233722169 TGCCTCCACCA-CTAAAACTATGCAAAA-----CAAAGTTTTCTACTAGTGTGTCAAAATAATTACTATAAACATCTGCTACTTTTGTGCTATAGCAATATAGAGGTGTTAATGAAAAAAGTACTAGTTTCATTGGATCCCAAAGAACC------ACACT-CCTGATGTTTTTACATATGATCCAAGTCATATATAGCTAAAAGAGGTAAGAA--------GAATGGTAGAGGGAGATAATTGTGTGC----CTGTTTTTGGAATTTCACTAATTTATTATGGAGCTTGAATGAAGTTCTTTGAACTAATAATTTAAACTTGATTAGCTGATAACTTT

a score=13005
s chr3           154010288 467 + 160039680 AGATACTGATGGAGGATGTATCACGT--AGCCACACAGGTTACTTTTTGCCAGTGAGTCTTAGCTACACAGGTTCAGCCAGCTA--------ACATCTGTGGTACCAGGCACTCCATAGCTCACCATGATAAATGACTACAGTTTCAATGGAT-ACTTTGGTACCAAGTGGGCTAACAATA---TGGGCTGTTATA------------ACAATTAGAGAGTTCATAAATTGTTTA-CTTTTAAAGAATCACATATGATCTTGAAGGACATATTTCCTGCTAGCTCACAGGAAATAT-TTTATGTATTGGCACAGCATTCCTACAAATAAATATTTTAAAATGAATGGCGGACATACTGTTCACTATTGAGTAATACGTTTGCCAAGTCAGTGTATACAGAGTTCATAGTCAATAACACGATTCATTTATCACTGGGCAGTTGGTCCCAGTAGAATTAAGGACATTATACAAACC--TATTTCttcattaatacaatg
s HiC_scaffold_1 140921729 489 + 233722169 AGATGCTTGTGATAAACTCACCACATGGAGCTGTTCAGGTATTCTTTTGCCAATTACTCT-AGTCATACAGAGTCCACAAGTTATCTGGAGAGCTTGGGTTGTATTGCGCACTGTATAATT-AGCAAAACAAATAAGCACAATTGAAGTATACCGTTTCTATATTAAGTAGAATAGCATTACTGTAGACTACTCTATACCTTGTGCAAACAATCATggaattaaaaaattgtttagtttttaaagaattacaAATGAATT---GGGCTAAGTTTCCTACAAGCTCATAGGAAATGTCTTTATATCCTGGCAAGACATCCCtggaaatatatatttgtaaatgaaTGGCTGACATAGCATTAACTGTACAGCAATACATTCATCAAATCAATACAAATGTAGTGCA--GTCAATAATATGATTCATTTGTCACTTGGCAGCTGGTCCCCTCAGAA-TAGGCACATTATAAAAactagttttttttcctttctacatTG

a score=12956
s chr3           154047975 1101 + 160039680 ATGGACAGATACAGTATTGTTAACATGCTTAGG-----GAC-GACTATTTCAATATTTCAAAAGTATTTGCTCCTCAGTGGAAGG-----ATAGCAATCACCTCAGAGTATAAGGTGGTGATT---GTCGCTGTGCATGGTGGATGGCATGTGTACACTCAATAAGTGACTATCCACAC-ACGAT--------------AGCCATGGCTTACCAATGGCTA--------------AGACCAGCT------------TGTGTGGCTTAAAAAC--AGCACTACTACCCTGCCTAACCTTGCCTTGAGAA-AAAGACTTCCTCAGGGCTAGACAAAGCTAGCACGC-------TGCTGGACTCAGGAACCAGGATGCGGCTGTAATTTGGCAGTTTCCTAGGCCATGCGATTGTTTATTCAGTTCTTAACTCTCCTCTTCAAACATTAAATAATGTAGATGACACAGCATAACTTCCCCCATTGGAAATAAAATCCTATTTTCATTGTGGCAG-----Gaaaaaaacaaacaaa--caaacaaaa-aaacTCCCACTAATTACTGCTTCTGTTAGCTTCTGCTGAATGTCAGGTTGTTTCCAGGTCTTTTGACTTCGAGCCGAAACTGATCTGTGATTTTTTCTCTTTAGCACTTATGAGTCAAATTCTTTGTCTTTGAGTCTTTGAGTCTTTGCTCAGCCTACTTAATGAAGAGTTTTATGTTTCATTTTGGTGCTGGGGCTCAAACTTGGGAGCTTGTCTATCCCGGGAAACTGATCTTTTACCGACTTGCCTTCCAAGGTCTGTCTTTTTCTCTGTAAAATCCCCTGTTGTGGGGGCAGTTTATATACATACCATGAA--GAAAAC-GTGTTGATTAGAAATCTGTAGCAAAGTC-TCCACAGTATAACAAAGGTCTTGG-----ACAGA---------AGGATGAAGCTTTCCCACTC--------AGAGCAGGGCAACAAAGCCAGAGTCACCAACTGTGTCCT-CATTGCCAGCCGCAAACATCAGCAAGCAAC-AATTGACCTGTGAAGCTACACTGGCCTCTGAAATAAGGGAAACTCATCAAGAACAGTGACCAGGGATTTATACAGAACGAACAGAAGGACATGTGGGCAGAATAGACATTCTAAGTAAACATCTGTATTTGT------TGTGGTTTGAATGGGAAATGTTGCCATTGGC
s HiC_scaffold_1 140960334 1059 + 233722169 ATGGATAATTGCAGCGTTATTAACATACTCAGGCTTAAGACAGattgcttttgtattttaggattatttgctcatctgtaaaaggTACTAACAATAATTATTTATGGGC-TGAAGTAAGAATTAAAGTGGCAGAGAACCCCAG-TTGTATGTATCTGTTCAATAAGTGGTTGTTTTCATTATGGTTCAGAGAGAAATGCAGAAGTATATTACAAGTGGTTATGTGAATATGAGGTAGACTTGCTGTAGATTTGGTTTATGTGATCTGAGACTGAAGTGTTACTACCATGGCTGACAATACTTTAAGAGCAAAAACTTTCTTGAAGCTG--TAGAGCGGGCATGCCCTGGAGTGCTGAACCTTGACACACTCATGTGAAAGCTGCCTAGCACCTTTCCAGGCCACTCTTTGGAAAATTCACTTTTT-----------TTGAATATTAGATAACATAAAGGAGATATCACAACTGTcattaatgaaaataaaccaTTTCCTTCACAGTGACatccattaaaaaagaaaaacaaagcaaaacaagacagacatCCTCCAGTTACTGCTTCTGTTAGCTTCTATCTAATGTCAAATTGCTTGGAAGCCTTTTGACcttaatttaa--------tgaaaaattttctctttagcCTTTATGAGTCAAAATCCCTAGGCCTGACT-------TATTAGTTCAGTCT-----GTGAAGacatttacttttgatttt--------------------------------------taatctcattttt-----------------------------------------------------ggGGCAGTTTGTATACATACAACAAATGGAAAACTATGTTGATTGGAAATGTGTAACAAAAACATGGAAAGTAATGCAAA--TCTTGGTAAAAACAGGTCTGTTCATAGGGCACTATTTGCGTACTTCCTAGAGGAGAGCAGAGCAGC--AGGCAGTACTACCTGCCAGGCAGTACATCATCAGTGGAAAAcgttaattaataataaaattatctg-GAAGCTG-GCTAGGTGCTACGATAAG---AACTTATCTATAAGAGTGACTaa----ttataaagaat--------tgaaaactggGCAAAATAAAAAGACTAGGCAAATATTTACACCCATGAGTAATGTGATTTT--TGTGATATGGTACAAGTGAC

a score=9827
s chr3           154049646 586 + 160039680 GGTAGGCTTGGCCCTAACATCTAGAGCAGGTCACTGCCTCTTGCTGTATCTCAGTCTGTGCTATTGCTCCTGTGACTGAGGAGAGGGCATGGG-GGGGCACCCATATCCTGTACATAGATCTAG---TCAACATGTAGCCCCAGGGCAGCAAGGA--AATGCTCACATCAGAGGCAAAGAAGAGAAGACTTGGGCAAAGTATTTAGCACCAAAAACTGCTTCAGAGAGAAATAATACATTTTGCTTAAA-CTGATGTGAATT------GTTGTGTGCTTGCTACAAAGCTCACAGACATTTAACTTGGGTTTTCAGGCTGGCAGTGTCCCGAGTTTGCCGCTTTAGC-TAAGTGGAAATGCCTCTATTCCCTTTCTAC----------------------GTCTTT----------------------------------------------AGTAGAC-------------------------------------------------------------AGGAAGTCATTACAGCGTGTCTTAAAAGCACACCCAGGATTTATGCGTATTAACA-TCTTAATTTTGCTAAGTGCCATGCGTCTGGCTTTTACTCTCCTGCTAGGAGA-TGCTTGGAAAATGACATCTCATTATAAAAGTTAGGAATTAACATCATAGATAGTA-TTCCATAAGCAAGAACCTGTCTTCCTGTAATCTACATTTATCTGTAT
s HiC_scaffold_1 140961623 703 + 233722169 GATGAGTCTGGTGGTGGAACTTGGAGCCAG---CTACCTCGTGGTACACTTCTGCATGTG-TACTGTTCTTGTAATGGAGCTAAGCTTGTGGAAGGGGCAGTACCGGTGTGCATAAAGGTCTGGAGTGCCACATGGGTc----agacaacaaagagaaatgttaaGA-CAGAGATAACCAAGGCAAGACTTGGCAAAAGT-TTTAGCCTTGAGAACTGCCTCAATGAGGAATACTAAATTTCATGTGAAGTTGATGTGAACTTCCAAGGCTGTGTGTTAGCAACAAAGCCAGTAGACATTTAAATAGGATTTTTAAGCTGACAGTGTCCAGA-TTTTCTATGTTAGCTTCAATGGGAGTGCTTCAGTTCActctttatttgtttctttgtttgaaagAAAGTCtttgttggggctggagatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccagtaccgataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaagaaagtctttgTAGCATGTCTT-AAAGCGTGTGGAGGATTTATTTATATCAGTATTTTTAACTTTACTAAATACCA------------ATGTTTTTCTATTAGGATATTTCCTAGAAAGCAAAATGTCATTGTACAGTTTAAGAATT-ATATCATAAATCATATTTCCAGAAATAAGAAGCTAT----TGGTAGTCTGTGTTTTTCTGCAT

a score=31624
s chr3           154051800 1947 + 160039680 GCAGG--CTGTCTCAGTGTTCCTTCATGGCTGTGTGGCAGGTGCCTCAACAAAGGATTGATT----GTCCTC--------------TCTTCCTTTAAGGATGAGTGGGGTTCATTCTCTTGGGGTGAAAGGTCTG--CAGATAGTACCCACTGCTGGGACCTTGTGAC-----AAGTGACACAGCGGCTAGCGTGTGTTAACTGTG--AAGTCACACTCTGTCGTTGGTCATCATGATGGCTGTGGTTAGAGCAGA----------AGCAGGCTCTAGCTGTGTGAGATGATACTGGGTTTCTTCCCCTCAGAGAAGCAGCTTCAGTTACCTTATGCTTAAACGGAGAGGTGGGATAAAGACAGGAGGTGGATGTATCAGCAGGTAAGGCGCACTTTGGCAGGGC----TCATTTTAGCTGTGTCACAAAGATGACTGTG--ATCTAGT-----TGATCTAGAAAGACATTCTGGGAGAGTTATAATCCTAGAATGTGTGGGTCATTTTCACGGTGATGGAACAG---------ACAGGTTGGCAGGCTTTGGTTTCCCTCAGCTCTTCCTTATATCCTCTCAAATGTGAAT---TTTCATAACATTTAAATTTAGTGATAAAGCCATTTTCAAAAGAGTCCTTTGTAATTATTAAGGGAAA--TCACCTTTAAAACGACAGCT--GTGATGCGTGACCTCAGGA---GATTGGCACCCAGTTTCTAATAATAAG---TTTTTTTGCCCTCTCTTTCTGAAACAGCAAAGTTATAATAGTCTGTTTTGCCTATTTCCAGTCACAACACATTCTAGGTCTAGATAAATAAACTGAACTGGAAAATAACAGGCTGATCAACC-TGTCTGCCACTCTCCTGAAAGCTGTCATTTTTA-ATTTCAGTATTATATTCATGAGCGTTGATATGAAGGCCCCTCTGTCAGAGCTGATCGTCTCATGTTTTGATTGGAGTA----GGAATATAAATCATGAATTTTAGAAATAGATTAAAATCTAAGGGCAGGAATTCCTGGATACAAAATCATGAGGCTGGTTCTGCCACtgtgtgtgtgtgtgatgtgtgtgtatgtatgtatgtatgtatgtatgtatgtatttggtgtgtgcatgtgtatgtgtgCAGGCATTGGCATGTGCCCGTGTGAGTGTGTATGTGGTATGTATGTggtgtgtgtgcagtgtgtgtacatgtggtatgtgtgtgtgcgtgtgtacttattagcatgtgtctgtgtgtgtggtatgtgtATATGTTTTGTGTGTGTGCCACACACACTATGTTTCTTAGCATCAGTTTCCTTAGTTTTAAGGAGCAAGATGGTTATGTTACATTAGCCTGACACCCGGGTGTCCCCTTCATCGAATGGTCTTGTCA-------TGTGTTTG--TGGAATGCTGAGCAGGGAGTGT--------CTTTAGGCCCAGCTGGC---AGGACGGATGGGCAAAGAGAGTGAATATTGA-CCTCCTGTGAATTTGATAGCCTCTGGATAGACTAACTGCTTCTTTCAT-----------TTCATTTCATTATTTTTCCAACTCAGGAACTGTTCTTAAGGTTGTT-----------------GAAGACTGAAAGCAAGGCAGCCCAGCCTTTGAGACCACTGGGC-AAATCCGAGCTGATGTGTGTCAAGGTGTAAATTGTAAAATGTAAATTGCTGTGTAAAGTCTATGAGGGCGTTGTGGGTAATTACCTGTGAGCTCTCCCTACTGTTTCCTTTAGGGTCTGTTTTCCAGGCAGTTTTTGTGGCATGAGTGGCACTACCTCCCTCTGTGAATTCCTTAGATAATACTCATTCCACTGACACT--GTCAGGATG--TCAGAGCTAAGCTGTGCCTTACACACAGTAAGCGA---GGGCATTCAGACCTCTACACTCACAGAGCCGCGAA-ACGCAGTGCTCAAG-----GCATGGAAGCTGACCTTGAGCAGGACAGAAGGAAAATGGGTTGAGAGAGAGCCTTTAAGATCCAGAACAGAATTTGAGTATAACACAGAATAAGACGAAAGCACAATTTGGAACAAGAAATG
s HiC_scaffold_1 140971401 1841 + 233722169 GCAGGTCCTGTCTCAGCATCTTCCCTGGGGTTGGTGGTGGGTGTCTGCTAGAAGGTGTGCTTCTGTGTCCTCgctgtcttcttcctccttcccttgggTTCCGCTCAGCTTCACCTTCTCAAGGTGAAAGTTCTGACTTGACAG-ACCCACTGCTGGTACTGTGTAGCTAGCTAAGTAACATAGTTGCTAACCTGAGCTAACTCTAGAAAGTAAAGGACTCTCAGTTATCATCCAGGTTGCCGTGGTTAATGCAGACAGTGCCAGAGGCAATTTCTAACTGTATTAGACAAT----GGCTTAT----CTCAAAAAAGCAGCTTCAATTATAGCATGCCTAAAACACGAGA-GCAATCAAGATAGAAT-------TACCAGTCGGTGAGGTGAAATTTGACAAGTCAGTTTCTTTCGAACTGCAGTGAGGAAGTGCTTGTAGCATTTAGAAACTATGATTTGGAGGAGGctctttgaaaaattataattctAAAATGCTGGCATAGTTTTCATGGTAAGGAAATAATCATTATTTATAGAAAGCTAGATGTTTGTCTCCCTCAGTTCTTCTTCATATGCTTTCAAATCTGTATGTTTTCCATAA-ATTTAAATT--ATGGCGAGGTTctgtttaaaataatgttttgcaGTTATTGAGGGAAAAATCACCTTTACAGACTTGACTCAGTAGTATGTTATTTCAGGATTGGATTTAAgcccagtttctattaatgaagactattttccttttctttttctaggacaGCAGAATTAAAATGATCTGTTTTGTCTATTTACAGTCATGGCACACTCTCagtatagataaataaatagaacca-aaaataacaggttaacCAACCCTGTCTATCACTTGACTTATAGCCGccatttttttgtttcagtgTTACATTCATGAGAATCAATATAAAAAC---TCTGTCAGAGGCTTGCTTGTCATGTTTTGATGgctttaaaatggaatttaaatacTGAATTTCAGAAATGAATTAAGA----GGGATAACAAGTCCTGAACACAAGGTTTAAAGGCTGATT------------------------------------------------------TCTAGCTTTGGTTT------------------------TGGCAC--------------------------------------------------------------------------------------------------------------CATGTACGAGTCTTG-------ACCAGTCATTTAAAATTTCCTAGcat--gttttctgtgttttcagaaGACAGATGGTTAGAGTAGGTCAGCATGGCATGTAGGTCTGTCCTGC-TCTACCAGCTCTGATAAACTGACGGTGTTTGCCTGGACTCCTGCATAGGAAGGGTAGGAAGTCTTGCAGACCCATTTGGACAGAGGACAAA-GGACAAA-AGAGCCAATTTTGTTCCATCTGTGA-CCTACTAACTTCTTTGGTGATTTTCTGCTTCTATtgtgtgttttataatttattc--ttgtTTCCCTCCCTGAGGGAATGTGCTCTTCATCGTTTACTTAAACATTTCTTAGAAAATTAGGAGAAAGGAAATATAGTCTTTGAGATTACTTGGTGAAAACTAGGAAGATGAATATAAAAGT--ACTTTGTAAAATGCAAAGTGCAATGTTTATCATTTGAAAACAACATGAGTAATTAC-GGTAAGATTTCC-TATTGTTTCTTATAGGGCTTTTTTCTCATGGAATTCTTATTGCATCATTGATGTCACCTCTTTCAGTAAATTACTTAGAAGTAACTCATTTCACTGACACTAAATCAAGATAATTAGGTGTTAAATTGTGTGTTACAGATAGTAAACAGTATGCTTATTCAGGGAACTATAATCATCAAAGAGTAAACAGGGAATATTAAAGAGTTAGAATGGAAATGGAAATT-AACTGGGCTGACTGCAGACAG-------GAGAACATTTTAGGTATGAAAT--AATTTGA--ATGAAGCAAAATAAGACATCAGTGCAATTTGAGACAGCAAGTG

a score=16954
s chr3           154062166 963 + 160039680 aaagagagaaagaaagaaa-----gGGAGGAAATGACAGCC------------ATTGTAGAGGTGGAACACAGCACAAACATTGCATATGAGGCTAACTCACAGTGACACA---------GAGGGCTCACAGGTCAGC-------CTGGAGAGGTGACTAATGGATGGTGAGGGCAAGTTCA--GCCTGAGAGGGCCTCGAGGACACTGATTCAAAACAGGGATGCTAAATGGACTCTTTA---------------AAAGC---TTCTCGCTGAAGAGAGAAACGAAGGTAAAGTGAAGGAATTAAAACCGTTCTCTAGAACAGTCCTTACTGATTAAGAGGTGGCAAAGAGATAGAGGAATTTGAATTCTCACACAGAGACAGATGTGTTTGTTT-TGGCATTCGTCATTGTCCA--GTTGAGATGGCATGCTTAAGTTGGGAAACCC-TTCGAAAAGGTGCTACGCTGGCTCTGGCCATTTTATTTCATAGTCACTTAACTGAGGGCCATTTGAATG---TGTTCTCTCTGTGCCACACA-GGACATGTCCG--CCTAAGGTGCATGAAGAGGAAATACCTGGGGGATGTGATCCTGTCCAGGCCAAAGGATCTGAAATAGTTAACACACTACTTGGGACCCACCCACACCTCTTCCCATAAATAGGCCAATATGTTTATGGTCATACATATAGGTTTAGAGGGATGGGTGTTACTCCCTGGAAATCCTCAGAAGTTAAGTCTCTCTGGAAGACATCAAGT-GTTAATTGCATGTTAAGGACCAGATTTAAGGAGAAATTGAACTGGATGCAAAAATAGAGGGCTTTCT-CCCCAACCCCAGAAGG--CACAGAAACATCAGCTTAAACCACATGGAATTAGTATTTTTGTAAGTTAAAAACAATTGACTGCTTACTGACAGTTTCACAGA------------------------GGCCCTGCTGCCACAAGATGGAGGCCACTT-TTCTACATATGTTTGAGATCCTATTTCCT----TCTG-TACCTTATTGTAGCAA-----GAACCCACCAAAGCTAAA
s HiC_scaffold_1 140988886 957 + 233722169 AAAAAGAGAAGCTGAGAAATTGCAGGGTGAAgttgagagttttaaaaagaaagagtgcaaaggtggaaaatgacaaaaacatttCATGTAAGACTAACGGAAAGTGCTGCAATGTTACATGAGACACAACAGGTCAGCGAACAGCCTAGAGAGGTGTCTAATGGCTAGCGAGGGTAA-TCCATTGACTGAAAAGGTCTTGGAGCCAttgattttcaaaagtaaaattaaatgaattcttTGCCTCAGTGCTCTCAGAAAGTACAGTTTTGCTAAAAagagaaatcaatttaaaatgaaaggaGTAAAATTGTTTCTTATAAATGT---TGCTGGTCAATAAATGGGACAGA--------AATTTGAATTCTCATATAGGGCCAGATAGGTTTTCTTCTAGGATTAGT-ATTGCTCAAGGCCCAGAATTCATTATTAGGCTgagaaatccattttaaaaagtattgtgtTGGTTTTGCATGTTTTGTTTCCAAGCCATCCGATTACAGGCCATTTTAGTGCTTTATTGTTTGCATGCCAGAGACTGACACATCTGGTCCTTATcagtaaagcaaagaaaaacatcagGAGGACAGTAGAAGTTATGACAAAAGAACTGG--TAGT----------CTT----CCCCTCCCCACCT-----------------------TCTGTGGTCAGAT----------------------------------------------------TCTCTCATTGTTGTATGAGGTAGAAAATTGCATGTCAAAGACAGGATTTAAGGAAAGATTAAGCTGGATACAAAAGTAGGAGGATTCCTATCACCATCTCAGAAGGAACAAAGAACcattaaattaaagcatataaaattactgtttttataGGTCAAAAGCAATTGAC----TATTGGCAGTTTCATATAGCTCACCTTAATGTATGTAGATCTGGGCCTTCTCCCTTAAGATTGGtgtaatttcttttatatttgtttgtttttctgtttcctcaggtctgttttcctATTGTGATGAGGAATGAATTCattatagcaaaa

a score=7417
s chr3           154075661 445 + 160039680 ATTTGTTTTAATATAGAAGAGATAGTATAATGGTTATACCAGATCTGAGGGAAAGGAGGCTGAGAAGAA-AGACATCTCTTACATTCAGTGCCTC----CTCTGCTCGCACCGTATTCTTTTTGTTGTGTGACAGCATGATAACCCTTCCCTCGGTGCAAGCAGAAGACTGGAGGTGTCATACGATGGCTGCATTGACTTGTCTGGGAATGT---------CCTTATAAGTTGTCAGCACCTCAGAATGTTGATGTAATAAGTGCACGGTAGCTGAAAGGCGAGGCTGTAAGAATGCAAATCAGCACAGAGAAAATTAGAGGTGAGGTTCAAAGAAGCACAGAGCTGTGAAGTCTTACCAAGTAATGTTTGGTTTTACTAAACGTTAAGATGCGAAACT-CAGCATGAGCCAAACGGTATGTGTGGAGTTTCCTAC--ATTAACTATGACAAGGTGTAATCT
s HiC_scaffold_1 141001955 409 + 233722169 ATTTAGTTTAGTAAAATAGATAGATTAAAAGAATTGTATCAGAT-TGAGGGGAAGGAGACTGAAAAAAAGAGACGG---TCGTACTCAGTGTGTTATGGCTCTGCT-------------TTTTGATGTG---------GACATCACTTACTTCCACATGTGTAGA------GCAGCCGCGTGTGACAGCTGCGCTGACCAACCTTGAGATCTAACAGGTAGCTTTGCAAATTGTTA--CTCTCAGACTCTTGGTGGGACCGACCTGTGTTGACTGGAAAGCCAGTAAATAAGAAG--AGAGCTGCTTTGAGAGGCTTACAGGTTAGATTCCAAGAAACATAGAGCTTTTAAGTCTTAGCTAGTAATTTTTCATTCTACTAAATATAGAGAAGTGATACTAAAACATG-----------------GGATTTTATTGCATATTAACAGTGATAAAGTAAGATTT

a score=46568
s chr3           154080332 3139 + 160039680 acacatgtgagcaatttttgTTTATGCACTAAAGTACCCTGAGGTAAG-GGAAAAACTTCaaattaataattttaataaaaGCATATTATACACATGCATGCAACAATATCTTTTTATCAACATAGAATTATAAAATATGTCTAGTACTCACAAAGCTACCCATGTGGCTCAGCTGCCTCATGTAAATTGTCAGAAATGGTTCTTTAGAAGGAAAACGAGAAAGACTAGAACAGAAAGTTCTGTCTCCGTATTAAAATAAAAACGTGAACATACTGAGAAGCAGGGGGAGATTATAGCGTAACTCTCCCTAAACTCTGTG-TGGCTGCTCAAGTCGTCACATCTTCAGTGTGAGCACACAATGGTAAAAGTCACTCA--CCTTTGCCTATT----TTGGTGACCTAGTGTGGTTACCTAGTGTACCACCATGCTCTG--CATCATGG--TGGCTTGGCTGAATGTTACACTCCTGTAATTTTTTTCTGGCCACTCCCACAGCCACACACACACACACACACCCTTAAAAAAAAAACTGACATAAAATGATGGCAGGCTGCTCACCTGTCTGTCTCACGGGAGAACTTGTTTTATAAACAGACAATTGGAAT---GGGCCTGGCACTCCAGAGACTTGTGGGAGCCAATGCTGTCTCTGAAGAGAATGCCATTCCTGGACTGGGCTCCTGGGCTCTTTAGTAGAAAATGCTTAATATGCA---ACATCACTAAGGAGAAGAATTAATTCCTGTTACCCAAGAG----------------GAGATGCTGTGGAGGCTGTGGGC------------CTTTTGTGCTTATTCTTGTGGCTGCGGCTGCGGCAATGATCAAAGCTATCGACAATAATACCTTTTGGTCACCTAA--CAAATGTCACAGGGTGTTTTTTAAATCTCACCGGATTCTCAGAGTTAACTTTGTGTCATGGGCGAGAAAACGATGAACCAGGGAAGG----------TAAGGAGAGTGTGTGCGCCTGAGCTGACTGGGGATGGTTAGACAAAGTTGCTGGCTAAGCAATGACCAGACACCC--TCCTAAATGTCCCAGCCGCGCTTGGACTACCACACTGCTTACACTT--TACATTTTTAAGCCAAAACACTATTTTGACTGTTTTAAAGGCAGGGC--TTCTCTTTGAATCAATGTGCAGGACCCAGGGAACTTAAGTTTTTTCCTTAAAAAACAGAGGGCTAAGAATGTAGCtgaggtcccgagtgtgccctctggcatcacgtgatgccagccgtggtggcacacgcctgtaaaccagcactgagcaggtaaagcgaagggaacatctttggttatgtagtttgagaccagtgtaggctacgtgggacttgttctcaagacgtactaaaactaataacagagaggctgtattttaTCTTTATCTTCTTTGTGCTTG----ATTAGTCTATAAGTGTCC-----ACAGTGCCGCC-AATGCCATACGTGACTAACTCCATGTCAGTTCACATTTCCCACAAGCCTGCGTTTCAGTACAATGCTGAGTGCTAAAAGAAGGTCCTAA--GATAAACACTTGCCATGTGTGCGCGCGCGCATTGCATTGTGTGCCCTTGATGA--GTGTTTTGCA--CATAGTAGCTCTGCTCTCGCGGGCGGTGGGAGACAG------CACAGAATTTTGCCAGTTATTTGTTGCATTAAAATTGATTGCTCTTTCCTCCATTGCTTTATGCTGACAAAAACTATTGTTG-CAC-TCACTGGTATCCAGGCATTGATTGTCACATTGGAATTCAGGTCTTGGAATCCGTCGTGGGCATTATTTCACCACAAAGAACTTCAGGAACGCTGTTTTCATTGTATTGGAACA-------ATCAGCCTTGTGGTTGTGACTCGAGC-----AGATTAATTTGGGGGCACATATGTGCC-AGAGAGAAAGCAGGGCTTTAAGGAAAACTATAGAAGTTAATTATTTTGCTTAAAAT-----GCCCTCTGGCAATGCCGTTCTTTACTGGTAATTGCTGTCTCTC-ACACCTGAGGCTTTCGATTCTGATAA---GTCATCAGAGAAGCGTGACTTCTCAAAAAGAATCTTTGC-CCAAGAACC--AAGCGTCAGCTCTTTCAGATGTCTGTCAGTTTACTAATGAGTCTAACAAAACTGTCACAGTCT--TCCTGGCCCACAAGGTTCAGTACTGCAAGATCCTCCTTCTGGTGG-CATCGTTTGATCATGCTCCTTTCAATGTAGAGAGAAAACGGGCGGGAGAGTGCTTTGAACTTTACAGACTGCTTAGCGGACATGAAAGGATTGCCAGCATTATTGGTTATGTCTACCAGAGTTCTCA---TAACGAAGGGAGGCTAACTTAAAAGGGAGGAGAGATCTTCCACCTTTAGATTGGTGCTAGCTGGGGGAATGTG-------------AGCTGACAGGGAAATATCAGGTCTATTGTCTG--TTGTTACTGCCTTTCAGGCTCCCAGCACTTGGCAAAAGGGGATGAAATTGAGGGACCACAGAGGAGACAGGAGATAAGAGGGAAATAATACCTAGAAAGACTTTTGCTGAGACAGGCTGTGAAGATCG------------ACACCTTGGCTCTATTCATCTGTGCTTACGTTACGTCTCATACTGTTCACTGA-ACCA--GATTAAAATCTTGGACTTAATTAAATG-------CTCAAGAA----CCTGTCTCAGGATTGATATAAGCTACTGGCTTTCCGAGGTTCCTTTAACACTCTAAATTTGGGTTGGGTGAGGCAATGGAATCAAGAAAGGGCACGCTGGGAGGCCGCCGTGTCCCTAAACTTGTCT--GATAGGTCACA-ATATTGTCATG--------ACAACCCCACAACGCAGGGCAGGTTCTCCTCAGTTTACACACAAGAACAAGGCAGCATCAAGATTTAAAAGCGTCAGTTTAGGGCAGGCCATACAGCTAAGCAAGCGGGGAGGCAGCACACAGGACTAAGTCCTACCTCCCTCTGT-----TGTCCTTGGTACTGCACCTACTGCAGTGACTTCTCAGTGAAAGGCTTAT------TGATTTGGTATCTTTG-----------TTACCACAGTAATTTCCTCTGTTGTCGCCAATAATTGTGTTTATGAAAGATGAAAAATGATTAAACTTGTTTTTGCAAATGAGCACCAGTGTTTATAACATGTATAATATGTATTGTACATAGAACCCAAAATTACCCA------ATGACTCTAAGATGTTTTATTTCTAATTCATATAAAGTGAAGAAAAAAAAAATCAATGAAA
s HiC_scaffold_1 141007327 2996 + 233722169 acaaaaatgagCATTTCTCATTGATACAATGAGAAAAACTggggaaaatagaaataatgtatATTGATTATTTTAACATAACTTTGTTATACATATGCA-ACATCAA-ATTATTTGGCCAATTTAagattttgaaaagtttt--------------------acatAGCTCATGTGATTcataaaagtta-caaaaataaatctttaggaggagaa--aaaaagactggTACAAAAATTTTCTCCTCAGTGGGCAGGCAAAA--GTAAATCTAC----------GTGTATATTAAAAAGATGCTCTTTTTGAAGTATCTAATGTTCCCTCACACTTTGCCATCTACAGTCTATATGTACCAAAGCAAGATGCATTCAGACTTTTGTCAGCTCTCGTTGGTGACTCAGTGTTGCTGT----------ACCATGCTATGGGCACCGTGGGTCAGCCGAGCTGAACATTAC---------------TATTGGGCCTTCACATAG--------------ACATATTCTTTCATTGTAACCTAA----GTATTATGTCAGGCCAGTACTTTAGCGAGC--ATTTGAAAACttgttttacaaataaataatctgaataCAGCATATTGTACTTCAGAGATTTGTGGGCATTAATGCATTTTTTGAG--------TATTCATGCACTGAGATATTTATTCCACGAAT-GCAAATTAATACTATGCATTAATATTATTATGGAGAAAAATTAATTGACATTACTTGAGAGACGTTCAGAAAGAGTTGAGATAATGTTCAGCTTTTCAGGAATACCCATGTGTTTTCGTAATTATTCTTTCGGCTTTGA-----------ATAAAACGTAACGACAATCATACCTTTTGTTTATATAATCCTACTGTAATGTGTACTTTTTTA--TCTAATTTAGTTCTTAGAAT-AACTCTGTTACATAGGCAAGAAAAGAATGAGCCATCTAAGGAAATTAAAACTCAGGAGAGAATAAACGATT--------TGAAGTTTAGCAGAGAAAGTTGCTGGCCAAGCCAAGCCTAGGCCCTCACTCCTGAGC-TCCTGGCAGC---------AACACAAGCTTTAAACTTGTTCAACAGCTATGCCAATGTCTGATTTAAGCTACTTTTGAAATAGTGTGATTCTTTCTAAATCAGTTTATAGGCcaaagataatttaaatttttatttttaaaactagagaTCTTGGAATAAACCTT------------TATCCTCTT----------------------------CACGCATGAATACCAGCTGAGATTTGGCACTGTTAATGATTAATTTTC----------TCTGAGTTCAG---------------ACTTTCCATCAAGCCACAGTGAAGTCAAATAC-----TGCTGGTTAAAATCATGCTGTTGGACATGCAGGTGAAATTAGT---TATCTATCTTTTGAGCAGTGCTGTTTAATCTTATAC-TGCCAAATT---------TTTGCCTTCTTCTCTAG----------------------------AAAAGCAAGACATAACAGGCAAAGAAATGCCA-------------------------GTGATTTTGAAGACAAAGGTCTGCAGCCAGAGGAGTTCCGTG-----GGGATGTGTGAGGCAGAGAGTGTACAGAATCAAGGCGTTTCCTTGCCGTGTCAAACTTG----------------CTGCCTT-TGCTATTAGAAACTGTTGTTGGCATGTCATTGGG--TAACGTGATGATTTTCACACCTGCTTGTAGAGCTTA-AATCTGTCTTATGCATTGTTTTATCAGAAAGAACTTCAGTAAGTTTATTCTCTTTGTATTGGAAtagaattttattctctttatataTGAGATATTAGCTTGTTAGACCCATTTTTGG-CACATGTGTGCCCAGAGAGAAAGCAGGTTTTCAAAAAGAACTA-GGAAGTTAATTATTTGCTGTATAATTATTAAGCATTTGGCTTTGGCATTATTCATTGGCATCTGTCATTTCTTTATGCCTAAAGCTTTTGATTCAGATaacaattcattaaagaggcaCAATTATTCAACAAGAAACTCTATGTAAAGAACCTGAAGTGTACACTGTTTCAGATGTCTATCAGGGT--------GACTAACAAAACCATTATAATCTCTTTATGGCCCATGAAATTCACAGCTGCAAGGCTTTGCTTCTAGTGGGCAATACTTAATCTTGGTTCTTTCCATTTAATGAGGAAATGGATGTGAGAGTGCTTTGAACTTTACAGAATGCTTAGCAAACATT-AAGTATTGCTATCATTATCAATTATGCCTACCAGAATACTTACCCTAATAGCACAAGATCAGCTTTAAAATGAAGCAAGATCTGCTATCTTTAGTTTTGTGCAAGTTAGGGGAATGTAATAAGAAAATGTCAGTTAACAAAGGAGTATCTGATGCATTATCTATTTTGTGACTGTCCTTTAGGCTTTCAGTGCTTGGCAAACCAGGATGAGATTGAGGAGGAGCAGAGAAATCAAGAGATGAAAAGGAAATTGTGCCC-TAGAGACTTTCGCTGAGAAGTgctggaaagattttttttttttgtctcactcTGGTTCTATTAATCTGTGCTTGTATCATGTTTTCTAATGTACATTGGTGTCAGTGATTGGAATCT-----TTTGTTAAATGTACTTTTCTTAAGAGAAACCTTACCTAAAAATCTATA----CTACTAGTTTTCTAAGG----TTTAATACTCCGAAGTTaggatgg--aaagaaagagaatcacT--TGAGCATTTTAGTAA--------ATTTCTAACTTTGTCTTAAATATATTGTATATGTTGTTATGATATTGCCACAACTCCACAAAGTAGGGCAAGTTCTGCCCAATTTGTGTAAGAGAACAAGGCAGCttcatgat---aaaatttta-tttatgcgACACTATACA-CTTCCTAAATGGTGAGCTAGCATTTACCACTAA-TCTTCTCAGATTCTTTCAAAATGCCTTTTACCCTGTGTTGATGGTACTAACTTTAAAGTGAAACACttgtttttaatgcttttatgtttttaaagtctTATGCTTCCCAGTGTAACTTTCTCTGACTTTGCTAATAACTATGTT-------GAgctaaaattaattatttcatttttac-aatgagCTTCAG-------AGCAATTAAGGTATATGCTGTAACAAAAAGCCTAAAGCGTACATTATGTATGTTTCTACTATGGCTTATTTACCTTTCAAGTGaagtaaagtaaaaacaaaacaaggcaa

a score=71183
s chr3           154086469 8216 + 160039680 [encoded data, 9039 characters]
s HiC_scaffold_1 141022492 7475 + 233722169 [encoded data, 9039 characters]

a score=17357
s chr3           154096944 474 + 160039680 TATACAGTCTCATACAAATGGCCAGTGTTATAGGTGAATTGATTAAATAAATATGCAGGGAAT---------------------TGTGCATTTATAAATTAGTTCAGATGTTCCAGTTCTATTAAAAAAAATCTTGAAGGAAAGGGTTCGTTTTT----------TATTTATTT---CTTTCTTTTTAA-----GATATTGAAGCCCTGAAAAGCTGAGCTTACATTTTGTGAATATGTTTATTGTTCTAACCACATTTCAGCTACTGGCACTAGGCTACAAATTGCCACTCACTCTACATAAAGTT----GGAAATAGACAGGCCACCCGGCAGCAATGCAGACTGCTTTAATGATGGTCTCTCTTACAATACCACTTCTTATTAGCATAATATTACAGATACCATTTGTATCCAGAGTTCCAGAGTTCAAGAACAAAATGTTCTGAGCTTCTGCAG-CAAGGCTCTGTCCTATGGAC-----AGCACAGGGAATGTGTATTCAGTGCGGGTGACTCATGTA
s HiC_scaffold_1 141032055 518 + 233722169 tATAAAGGGTCATACAAATGAACAGCATTACTTGTAAACTAGTT---TAAATTTGCAAAGTAAGAGTGTGGAAGAgaccatttatttgtatttgtaaacCGAGTCAAACTTCTCAGTTACATAAAGAAacatttaagaagaaaagttTCATTTTGCCCATGACTGTGTTTgtacaagttttatttttaaaagcagatgtTCAAAGTCCCCAGAGCTGAGTTTatgttttatgaatatatttattgtctTAATCACATTTCTGTTACTGGTAGTTGGCTA-GAATTGCAAGTCATTCTAAGTAAAGTTAAGTGGAAATAGGAAGGCAATCCGGTGGTAAAGCAGAGTACTTTAataatgctttcttttaaaatatggctTCTCATTATCATAACATTTCAAATCCCATTTGTAGCCAGAGTTCCAGAGTTCAAGAGC-AAGCATTCTGAGTGCCTGCTGTTAACTCTCATTCATACAGAAAGAAGAGCgcagaaaatatgtatttagtGAGGCTGGTTTATGTA

a score=16624
s chr3           154097897 1065 + 160039680 GTCTGCTGACTGTCCTCCATG--------CCTGTCTCCCTCAAATCTACCATTGGTGATGCTGTTATCAGTGATCAGCATTAAGTGTATGCTCTTC--TGACTGAAACTCTGCAGCATTT-CGGAACCTATATGATG--CTGGAGCTCTTAG------------GACACCAGTGCCCTCCAA-TAT-CTGTTTTTTCCATTCCCTTTGCTCTTGTGAACAATACATTTGT--CATGCTGTGT-ACCCAGCAAGTCTGGGACACTTGTTCTCAGGT---AAATCACACACAACACACCTTTTTACCTGTGAGCTTTCACTT--CTAGCTTCCCTCTTTGGCCAGAAACATACT---------------TCTGTTTACACCATCCTCTGCTTATTTCTTCCTTACTTCTCACGACTCCAGTGA--------GTTCTCCCCAGC---------TAGAGTCCTCCATGATTGCACCTGACACATGATATTGAAGTTCTGTTTGTATTTTGGGCTCTCTTACCAGGTGGTAAGCTTACAGAGGGTAAGTAAGGACCAGGTCTGTGTCCCTGCATCCT------------------------------------------------------------------------TGGTGTTGGGTGCAGGGTAAGTGGTCAGCAAACACTTCTTCAACTGACCTCAAGGATGTGCCCCCGACTTCCTTATAACCAGCCTCATCTAGCACCACACGCCTCACCCCA--TCAGGCAGCTCAGAGAACGTCTAC-AGTTTCTTTAGTATTCCATGCTGACTTCCAAGGGCTTGCAGGAGGATGCTCTTCCAAGAGTCTGGGAGTCCTTCCCTCCTTCCTTGCTGTGCAGTCAGTTACTAGCTACTCTTTTAGATGGTGGCTTGTCTGGGATGCATCTTCCTCTA--AAAACTCAGTTC--TTCCTTGAC-----AGGTCAGACCAGGAAATGCAC-TTTATCTTCTTCAGGTATCTCCTGTGACCACAGCCCAGGTTAAACTGGTGGTCACTTGGGGGACTACTTATCTTTATTC----CTAGCCTGGGAGTGCCACTGCCTG------CTACTGGGTCTATGATATGGTAGAAATTTgagagagagggaggggatgaaggaagggcagagggagcaggtaaagaggaaggagGACATAGTTTTTCTTCTTATTTTGAGAAGAGAAAGAATTAAAATCTT
s HiC_scaffold_1 141033645 1150 + 233722169 GCCTTCTGATTGCCTTCCATGGCCCCAGGCTTGCCTTCCTCAAATCCATCTTCG---ATTCTGTTA---ATGGGCAGCCTAAGTTGTATGTTTTTCCATGATTGAAACTCTTCAGTAGCGATGTTACCTGTGGTATAGCCCCAGGTTCTCAGCAGCACCTCGCCAATATTAATTCCTCCCAAGTATTCAGCCCTTTCCTTTCACTTTAGACTTCAGACCAA-ACATTTGTTTCATGCTTTGTGACCCAGAAATCCCGGACTACTCATATTTGGGTGCCATTTCACATACTAGGTCACTCTTTGCCTCTGAGCCTGAACTTAACTA-CTTTTTTCTTCTGCCAGAAtcactttgttaaaaaaaaatattcctttgtCAGCATTTTCAg-gtatatttttttcattctttataattCCTGAGGTTTTTTCTGCTTTCCTTAGTGTGAGTTGGTAGTGTTCTCTATTATTCCACTTGTTAAAGAATGTTGAAATTCTGCTTATATTTTGAACTTACTTAATAGATGGTAAATTC----AGTGAAGCTAAGGATGATGTCTTAGTCTTTGTGTCCTCAGAAACCCACAAGGGATGAGAACAACAGTCCCTGAGGtggacacacacagacatgtcATAACCTAGAAGTACAGTATTGGGTACATGACAGATGCCTTATAAGCGCTTGTTGAGTTGACC-AAAGGATGCGCTCCTGGattcttt---tctaatttcattttgtgCTATTTGCCTCCACTCAGTTAATTCATTTCTGGGAACACCTTCTGGTTCCTGTGGT--------CTACTTTCGAAGGGTTTTCAGGCTGA-----TTCTAACa----------cctttccctctcctt---tgtgCAGTTAGTTATTATCTGCTCTT-----TGACAGCATGACTTAGACACCTCGTATTCCGGTAAGGCTCTGTTCCTTTCCGCTACCGTTTAGGACAGATTAGGAcactcacttttattttcttaaatcatCTTCTATGATCCTAGCACAGTTTATATGGAGTGTC-CTTCAGGGATTATTTGTCTTTCTCCCTGACTAGACTGGGACCTCTGGTATCTGTTATTACCACTATGTCTATTATATGACAGGAATTTAATAAAG-----GTTActtaaagaaagg----------------------agaaagaca-gTTATTTTTTCCTGCATTGaaagaaggaagaatttaaatttt

a score=48256
s chr3           154107574 2138 + 160039680 TGTGCGTTTGGAGCACATGTCAGTCCAGCAATGTCGACTAGGCAGAACAGGCTTTCCTCTGCTCA-----CACTCCAACACACTCTATTCACCATGTGAGTTGCCAAAGATACTTA-AGGGGCTAACTGAGCCACTTTCATTGTGGGGTAAGGAAACTGG---GTGGGTTGCAAGAATATTGTTTCAGTTCAGTTTAAGTCAAAACTACTTTG----TGAAGACATTCCTTAATGAAGCCTCATCTTGGGGAGGTCCAACAGACAGCATGGGGAACAGGGTTCATAAAGGGCTTAGAGCGATTGAGTTGA------------TGAAAAAATTTAACCTTGATTTAATGCAAATTGCGCAGAAAATTGGAGGAGGAGGACTGGGGAGGGAATTCTGTTTTTAATATTGACGTGAACTGGGTTGACATTCACAAAGCCCAAGTGGGGACTGTCTGCACTCAGGCAAGAATAAAATAATGTGAAGAATGTTCTAAAAACTCTAC-------------------CCTGTA---AAATAAATGGAGCCTGAGACACGTATGTCTCTGTCCTGG-------------------------CTCATCTTTGAGTTACAGATTCTCGTCTTAGGGGCTGACCAGTTCCTCCCTTCTCTTCAGACATTGCTTAGTGTTATTGCTTGGTTTCTGCTATGTCATCAAAAAATCTTGTATATTTCTCACTGGACATGAATTAATAATGCTTTACCTGCAACACGAAGAACTATTAAGGTGATAAAAAAAAGACAATGAATCTATTTCAGCTCTCCAATAAAAAAAACAATCAAAAACC--CCACTCCTCCCCCTGACTGGCCTACTAGTAAATGCAGAAAACCCTGCAGGATTTCTTCA---AGGGTCACATTAAGAGTCTATTAAATAAGTAAGTTAATTAAGCCTTGACATTCTGAAACAATCCTGAAAAGTTCTAATTAATTTTTAAAC------------GTGACGTGAGCCCTCAACACTCTCCTAAAATATCATCCCCCAATCAATCCCAGATCACACTGTGCAGTGA---GCTACTGGTTTCTTTGCAGTTAGAAACATAAATCTTTGGTCTGGACAGAAAGTGTTGTAGCCTGAAGGG---AAAAGCCCACTGAGGTTTTAAAAGAGTGGCCAGAATTGTTAATAGTTTTTATTGACTGT------TGGTTATTTTGTTGCCTTTGCCTTGATTGTACACCAAGAGAAGGAAGCTAATGTATTTAACTGT----ATACTTTGTATTGAGC---TGTTTACCAAAGGTTGTAGGATTGACTTTTTTGATTGGGTAGATTTTTTTTTCAATTCTGT-ATAAAGGTTTGAATATTCACCCCAATAGCACtcttttctttttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacactccaatagagggagtcagatttcgttacggatggttgtgagccaccatgtggttgctgggatttgaactccggacctttggaagagcagtcgggtgctcttatccactgagccatctcaccagccccAATAGCACTCTTAAAGTCTGTCCTTTCAGAATTCTACAGCACTGATGAATAGGAACCCCCTCATCCCTGCTGAGGACTCAGACAGTCTCTTCCTTGCTACTCCTGTCTCGGTCACATGTGTGGGTGTGGGAGTTACAGTAT---CAGAATAAGAGGCAAGCTT--TGAGGATA-GGAGCAAGGAGCTGAGCGGCCTGGTCTCGGTGCTGGTGAGTTTCTGAAGTGTGTAACTGCCCTCCAGAAAATTCTGCCTCATCT-------------------GCCAGTGAGAGATTTCCTGacctgctcattaaaaaagcaaatccatgagggtctattcaattgactgaatcaaattctctgaagatggtgtctggaa-tttgcattttTAAAAAACAAGGTGCAGAACTCCATATTA-----------AACCCT------AAGTCTCAGTTGGCTGATGTGGT--AGAGAGTCATCCCTGAAGAG----ATCTCTCATCTGTCAACATCTCTAACAGTTATTAGTGGAGACACATGAA---TTCTCTTCA------AA----TCTGGACCAGCCAG-TCTTTGTTCATAACtgtcttaggacctttctgctgctataacaaagcactacagactgaacagcttataaagaagaggaggttcacatccctcacatttccagaggc-aggagcacatgtttagggatacagtgggcttggtgttaggagaagtgatgctgtgtc
s HiC_scaffold_1 141051420 2037 + 233722169 TGAGTGTTGGGAACCTGGGTTAGTCTTGCAGAGGATGCTAAGGTGAAAGAGCTTCCCTTTGTTTAGTCTGTGCTGAAGAGATCACTCTTTCCCATCAGAGTTGC-AGAAATATTTGCAGGGCCCAGTGGAGATGGTCTCAGTGTGGGTAGAAGAAATCGGTTTATGGTAAAGAAGAGCCTCACTTTGGTTTAATTTCCACCAAAACTGCTTTGACTATGAAGGTGTT---TAACAAAGATTCATTTTTAGGAGCTTCATCAGGCAGCATGAGAAACACATTTCATAGAGGTTTTAGAGCAATTGAGTTGAGAGCAGAGTTGACAAGAAAACTTAACCTTGATTTAATGCAAATTGCTCACCAAAATGAAGGAGGAGGGGTGAAGAGGGCACCTTATTTTCATTATTGACATGAACTGGCATGACATTCACATATCCTAAGTGGGAGCTGTCTGcacacagac-agaagaaaatgaag------atattgTAAAAATTCTATGTTGGTGAAATAATTCCCGCCTGCACACAAAGGAATGAAATTTGAAGCAGACATTCCTTTCTATTAGGAAATAAACAAGCTGTACTTTCGAACATTTACTTGAATTACATGTTTTCATCTAAAGGACTGACCTattcctcccttctcttcagA---TGGCAGTTTTTATTGCTTAGTTTTTGCTACATCGTC-AAGAATCTTGTGTATTTCTCATTGGACATGAATTAATAATGCTTTACCTGCAGCACAAAGAACTATTAAAGTGAT---AAAAAGACAATGAGTGTATTTCAGCTcgccaataaaaaa------caaaaatccactcCTCCTCTACCCCACTAG---ACTATTAAATGCTGAAATATCCACAGGCTCTCTGCAGAGAGGGTCACATTGAGGTTCTATTGAATAAATAAGCTAATTAAACCGTGACATTTGAAAACAATTCTGAAAAgttctaattaatttttaaacaatatcaAAATAATGATTTGGACCtc--acattcttttaaaatatcataaccCAATCAATCCCACAATGCATTATGCCACAAAAGGCTACCGATTTTCTAATGGTTAGAAACACAGTTCATTGGTCTGGATATCA----TGATAGccagaagggggaaaaaatccatTGAGATTTTATAGaagtgaaaagaatttttaatag-ttttattgaCTCTCCTTAgtatttgctttatttcctt---CTTGATAGTATGTTGGGGAATGGAAA-----ATATTCAACTgcaataattttttgt-ttaagcTGGTGTTTACCAAAGATTGTAGGATTGACTGTTTT--TGGCAAAAGCAAATTTTTCAACTCAGTGAAAAATGTTTGGAT-------------------CTTTCCTATGAAATTTCCACT----------------------------TGTTTTCTGAC---------------------CTTGGCTTCACCTAATTGTGA-----------------------------------------------AGACAAGTGACC---------------------------------------------------------AATTCTTACTCACTGGTTAAGA------------------CCGTGGAAT-----------TTCTTTGTGATTGATACCTGTGTGAAATTTGAATGTTTGAATGGAACTGTGCGCACAACATTACAGGAGAGGTTGGGGAGAATACTGGGGAGGAAGCTGA--------ATCT--------GCAAGGGCCTAAAAGCCTGAGCTGCCTTTGCTACATTCTTGCTTCATCTTGCAGTAGGGTTTCTCACCACCTGTGTAAGATTTCCTGCTGTGCTTGTTACAAAGGGAAATGTGAGGGGTCCCATTCAACCTATTGAATTAGCTTCTCTGAGGATGGTGCTTACAAGTTTGCATTTTT----AACAGGATTCAAGATTTCATGTTATTTAAGAACTGATCCCCTGAATAAAGTCTAGGTTTGCAGGTACAGCTGAGATAGCCTTTTCTGAAGAGTAATAGCTTACAGTTCCCAACA---CTCATAGTTGTCAGTGGGGAAACTCATGCCTTTCTCTCCACCTCATAATGTTTCAGGATCAACAAGATTCTTAATAATGACTGGCTTAGTGTATTTCTGCTGCTGTACTAAAATACCACAGAATGACTAATTCAT---GTAGAGTAGATGTGTTTTTCTCATAGCTCTGGAGCCTGGGAGTTCACAACTAAGGTGCTGTCAGGTTTGGTGTCTGATGAG--AATGCAGTATC

a score=21638
s chr3           154111022 1419 + 160039680 CCAGTACTGGGAACATTTATTAAAGAAACATGTCTTCTGTTTTGGTATGCTTTGGAATTTACTGTGTAACTGCATCCCTGTGGGAAGCTCTAATTTAGATTGATTTGTTTAGAAGCAGTAAATGATCATTTATTTATAGAGATCAACATGCAGTCTGAGTCTAAAACATGTTTGTTTAGAAATTAATGAAGGTAGCAGGGTGGGCTGTTAACTTTTACTGATGAGAACTAATGAGGGCGTAGGCTCAGCTGGGGGGAAACTTGGTATGGTCCCTCAAAGAACTTT----------GCAAGCCCCGTGCT--TCAGTGAAGGTGTGTGTGTGGGGGGAGGGGGGGACAGCTAGGGATTTCTGCTGGTGTG----TGTGAGGAATGGAATCTGCACAGCTAA---GGGTATTTATCGGAATGTTCAAGCTTGTGG----------TCTAGCAGACGAAAACCATG--GAGCTGTGCCAAGTCATGGCTGGGTCATCCCCTTGCCCTGGCTATAGATGCT-----------GGAAGCTGTATTGCTACTGTCCTCCGTGTTACCAGAACAGATTCCCCTCTAT-TGTGCCAC-TTGTGCTGGGACCTCAAGCCAAATCTCTAGTGACTTAAGCTTTCATTC-------------------------------------------------------------------------------AGGCAGAC-ATTTGGTCCCTTAATGTAAGGAATCATCCAAATATAGGGAAAGAATTCAGATGGGGGCCAGCCAGTGG--------TGGAAG----GCAAG--------------GTAGAGATGTGGTTTCTGCACTGACAGTTCAATGGCTGTGCGGG---AAAT-GCTCACTCTCTTGTCTC---TTGGTGATTTCTTTTCAG--AAATTT--ATCTAAAAGATTTTTTTAAACTTTGTCTATATTTATATAGTTAAAAGTAAACACCGATTTGCTAAA------ATCACTTATTCTAGGTAGGTACTGAAAGTTATAGAACAAAGAGGCATGGAGTTTT---CTCTCCTGTTGCTCAGGTAGAGTTGGGGAGGGGCGTAGGAGTGATGCATAAATAAAATCAGAGGTGGAACAGAGAAAGAGAGAGAGTTCATGGAAGCAGACATGACCGGTTAAAG--TTCAAAGGGAT-AGGTGTCTGAGATGAACATTAAACATGTGGAGGTGGCAGAAAAACTATGTTACACGACGAAA--------AGACAAGAAA----GGCAGTGTGGCTGTATTTAAGGATCAGCAAACTACACTGCTG-TAGCTATATAGATAGGGCAGGAAACCCATTCTA---CCAACTGACAGATGAGTCTTCTGGACTTTGTGGTCCAGGGGTGGTGGTCTGGTTTTCTGTTCACAATTATCAAGGAACT-----------------ACTAGAGACAAATAGTAGAAGCTCAGTTATAGTTGAGGAAAATCAATCTAGAAAAACTGTGTAACTTG----------GAAGAAACTAGAGTCAGAGAAATTACTTGGGGATGAGATAATCTAAAATAAAGATATTAAGGCCCTACTATGAGTTTTGAGCTAAAGTCAGTATTAAGAgcgaagaca
s HiC_scaffold_1 141059203 1538 + 233722169 CCAATTCTGGTGGCATTTATAGTAGGAGGCATTTTTGTATTTTGGCATGATTTGAATCTCATAGT--------ACCCTCATGGCAAGCTCTAATTTAGATCAATTTGTTCGGGAGAAATAAATGATAGGTTATTTATGGAGACCAACATGCAATCTGACGTTAAAACATGTTGGCCTAAAAATTAATGGAAGTAGAATGGCAGGCTGTTAACTTCCAATGATGAGC-------AGGATGCAGACCCAGCT-AAGACAATCTCGCTGTGG-CACTGAGAGGTCTCCTAACTGGTCAGAAAGCCTGGCACTGATCAG-----------GTGCCAGTGAGGGGGAGAGCAGC--ATGTTCTCTGTTTGGCTGACGATGACAGGCACGGATTCAGTGGATGGAATCTGGGTACTAACAGAGCTGCTGGGAATTCTGGGGAGTAAGCCCCAAGCAAAGGGTAGAGATGCAGAACTGAGCTGGG----AGCTGGACCCTGCGGCTTGTCTGGGCATCGGTGCTACTGTGCACTGGGACGCTACGCCACTGCTGCCATTGGTGCCACTGGAGTTGGTTTTCCTCTGTGCCTGCTGCTTTGTGCTGCCAGCACATTTTAAGTCCTGAGTGGCTTCAGCTGTTTGTCCAAGGGCTACGTCAGGTGCCCATGCTTGCGGTAATAGAAACACCAGGAAACTGAGTTTGCTCTTGAGGTTTATAGTGAGAGGCAGACTCTTCCGTCTTCAGATCTGAGGAATTGTCCACTTGTAGGAAGGGAGTTCAGATGATACAGAgccaataaaacatttttaaaaaccccacaaatGCCCGCTCTAGCTGCTTAGATATGGTTTT----CTGCCATACCA----CTTTGTAGGATTAAATGGCTCCTTGTTCTgtgtcaattttattattttctttcagatagaTTTACATCCAAATGACTTTTAACTAGCTCATTCATA--TACTTAGTTGAAAATAACTATTGGTTTTCTGTAGCATGGAAAGCCTGTTC----TAAGTTCTTagagctataaaaataaaaatgatgtattcCTGGCCTGTCCAGGTGCTCAGGTTGACTTGGGGAGGGGTG-AGGAG---TTTGTAGGTAAACTCAGAGGT------------GAAAGACAGCTGATGCAAGCAGACAAAG------AAAGCCTTCAAGGGGAGAAGGCATCTGAGA-AAACATTAGACACatagaaatggaaggaaa--cacGTTACACTTTGGAaaagatggcagaggagaaaatGGGGTAATGGGGTTGTA-TTATGGAGCAGCAAGCTGTTTAACTGACAGCCACAGAGATAAGGCAGGAAATTTCAGTTAGGCCCAGATCATGCACAGCTGTTCTTGAATT-------------------ATTGGATTTCAGTTCAAAGCCATTAAGGAAATAATTGGAGTTTGCATTGACTAGGTCTATGTGATAGAAATCTAACTGCGATTAAGGAAAATGAATc-agtaataatatataaaatgaatagaaagaaaagggaacagagaaagagaagtta---AGAGATCAGATAATTCAATCCAGGAATATTATGAATCTAAAGTAAGTTTTGAActaaaatacacatgaagaatAAAGATA

a score=18443
s chr3           154113260 1069 + 160039680 AGAACAGTGTATGTAGATCTAACACAAGTTTCCTAATTAAACTGGCCTGTCTGCTCAAAAGCAATTGCATTCTGGAGAAGACAATCATCTGTGCTTCCTCTGTCTTCCCTT----AGGCCCCGTCCCATGATTGCTGAAGGAATTCCTTCAGAATGAAATACTTCTGCAGATTTATAGACTCTAGGACTCTGCCTCTCGATCTACCATCTGCCACTTCC------TGCAATTAATTCACCCTTTCTCTCTA---TTAATTGTTTTAGCTTACAGTGTTCTTTGCTATTCAAAAATCTTTTATTGTTCTACGAATCCATCAACTAGCAAATG-TTATTGACACCCCTCTTCTCTGCCTGGTGCTGGGGATGTGCAGAGACTATGGCTTGCTCATCCCAGCTCAGTCTTGCTTGCTTCTT----GTGTCACACACTCTCCTTGCTCTG-CTCTTGTCTGACCGTCCACCTGCTTGATACAGCAAAGTTGCTATCTAGTCTCAACTTTGGGACATGGTATGCTAAAAGAGATATGGGACATA-----AAATTTTAA------CAACCT----GGAAAGAAGGTGAAATGTTATTTGAAACAGTGAGCTT-gttaggtatggtggcccatatctgtcatcccacca-tgtgggacatgggggtaggaggatt--cggttccaagccacctttggctatgtagcatctttgatgccagcgtggacaacagaaaacattgtcttaaaacaaacaaaaCAAGCA-------------AGCtaat--aaaaactaattaattaaattt----attaaG------TGTGCTTAGTGGAACAGTATTATTATTTTCAGTGTTTCTTGCCACCAAAGAGTTTCAGTTTTGGGAG---TGT-----GTGTTTTCC---TGCTTGTACTTTTCCAGTGCATTGTGAAGACTTAGGTTGTCTCTGAGTTGGGTAATG-----AGTGTGCTCATTGAATCCCTCCCT-TGTAAGTACCTTACAAGGAAGAAATAGCCTTAAGAGCTTATAACATAGGACCACATTCCATTC------CTCCAA-----------ATTTGGTTGTAAAATGAGTTTCTTGACACTTTAATATTCCA------ATCTTTTTTGGTGTTCAAATCCAAGGCTGACACCCACAAAACCAGA
s HiC_scaffold_1 141062505 1108 + 233722169 AGGACAAACCTTGCAGATCTGAAACAGGTTTCTTAATTAAGTTGGCCTGTCTGCTTGACAGCTCCTgggttcctgggaagataatTGTCTGCAtagactctgtcttttcctccCAAGCCTCCACCCCTTGGCTGCTGACAGCGTTCCTTTAAAATGCGATGCTTCTGCAAGTTCACACTCATTGGGGCTCCACAGCTTTATTGAGCATCTGCCACTTCCACATGATGCATT---TCCCCCACATCTCTCTGATTTTAACCATTCCAGACTACCAAGTTGTTCACTGTTC--ATTCCTTTTATTGTTC----AACCAATCGACCATCAAAAGCCTAATAAAGCTCCTTATGTGTGCACAGAGC-------GTGCTGGAACCCTAGCTGTCCTCTCCCATGTCGGGC-----TGCTTCTGAGCAGtgctttgttgtctttttcctgtgCCTTTTGTGTCCTCTTTTACCTGGTTAATACCTT-AATCTACTGTCTACTCCCAAAT-----------TGTGCTTAAAGAGCTATAAGagataaagataaattttaaataaggaaatttaaaggaaaggaaagtgaaatcggattttaaaaagtgatcccAGCGGGGCAAGGT-GCACTCACCTGTCACCTCAGcaccgtgggaggctgaggcaggaggactgcaaatgtGAGGCTtgtctgggaaacttagcaactttagtg-----------------agactttgtctcaaaatgaaaaataaaaatgggaccGGGGATACAGTTAGTGCAGAGGCTATGGGTTTAACCCCGAGGATGGAGGGGAGTTGAATTTAATGGAacag--ttattattttaaacactttCTACTACCAAATGGTTTCTGTTTTGGGGGAAATGTATTTAGTATTTTCCAGTTGCCTGTAATTTtgaagtggatttt-----ttttg--tgTATCTTTGTTATCTCCTGACCACAGTTGGCTCACTAAATTCTTCACTGTATGTGTTCTTTACAAGAAAACTACTACAGTGAGACACTG-AACTTAAAATCATACTCCCTACAGTTTGATTCAGGAGAACATATtatttgaaagcaaaat--ttttcttgacattttaacATTTCATCTTTTGTCTTCTGAGGTGTTCACACCTAAGGCATAT-CTCACAAAACTAAA

a score=21578
s chr3           154114778 1752 + 160039680 ttcTCTGTTAC----TCATTTCCCTATCAGTATGCTGAGGCTCCTGCTGTTACAGTGGGGGGATTTCTAGTAAGATATGATGC--TGCATCAGATATTTAAAATTGTAGTGGGGGAAAA-TATCAGAATATGGCAGAGGCTATGGGGGCTCTTTCCCAACCTCTGTAGGTATAGCACTCTTTTTGAGAATGGTTAT---------GTGACTGTGGTGATGCA-------CAGGAACAAAGCAATGTCTCATGGACACAGAGCTTTACGCATCCAGACG------------------TTTGAAGCAATGGGAGATA---AAATACTTCCTTCCCTTGCAGACTGTG----TTAAACTCGGGGATGCACAGTTGCTCTTAGCGGTTGAGGAGGCA---TGAAAAATACCAAAGCTTAGTTCACAGTCCCAGGGGATACA----CGGGCTTCCTGCGCAACGACACCTCTGCCCCTCGCT-GTTGTGATTGCTACTTACAGCCTGGGTAACAAACCGTAGGAAGCTAATGGTGTTTTAAATGGAAAACAGCACTTCATTAGGACTGGCTAAAGGGTTCTTGGCAAAAATTCAACCTAATAAGTATGCAAgtgtgtgtgtgtgtgtgtgtgtgtgCTCAGCAAAGTGTCTCACAAGCTTTCAGG-GGTGTCACTTGTCAGTGCAAATCCCCTTTGACAGCTGATAAACAGTAGGGAGCAGGGCATGGAGAGCTGGAGGCAACTCTGAAAGGTGAGGCTGGTAGACCAGTAGACCGGCAGTAGAAGTGGTCAAACCCCACACAAGATGCTTCTTCTTTACAGCCTTATTCCATTGACCCTTGTTAGGAACCTGAGTCTAGAAATAGGCTAACAAGGgagaccggggaaatacctcagtctgcccagtgccaccttgcaagtatgaggacatacaccttatccccagcacccatgaaatagccaagcctgggccgtgtcacctgcgggtctctggggctcataggccagccagcctaatctaaccagtgaacagcagtgagccctgattcaacaaacaagatg-aggaataccacccatggttgacctctggcctcatatacacatacatacTAACCCACAGACATGCATACTCCTCCCAATAGAAATAGGACAGTGGAAATATATGCTTTGGAGGGAATAACCAAGGGTTAGGCAGTAGGTTGAAGATATTGGCTTTCTTGTT-TGTGCCAGATCAATACTTAGGATGGCCACAGCTGA---GGTAAAAGACTCCTTAACCAAGCAGACACCCACCTAATTTAATTCCAGT------------GGGCATCCCACACCTGGAGGATACTTAGATCCTGCTGTTTTCTGAGGAAGCCTGACCTTACTATGCAGTTGCTAAGCATTGTTTTACAGGGAGCGCATGAGATTGCCCCGGGCGGGCGTGAGAAATTGCTGCAG------------------------AAGATACTGTAGCTTTCTGCTTTCCCAGGCAGCCAGAATAACCCAGCACTCCCCAGAGAATGC----------------------------TTTGAGAAGGGAATCAGGATTTAATTTC---------AAATAGCTTAAGACGTGAGGATTTTCAGAGCAGAGCCAACAGAAGGGAAGGTTCTACTGCTTGG--CTTTGCTGAT------------------------GGGATA-AGGC------ATTTCTCATAAGTGGGTCTACAGTAGAACATGGTTGTGGTTACTGGAAAGACTCAGAGTCAATATCTAGACTCAAGTTCCTGCTGTGCCAGTCAGTCTTTCTGC-CCCTGGAGAGATTCTCCTAG-TCTCTGAGCCA-GCCCCTTGTCTGCAATCAGAACAAATAAGGCCTCCTTCCTAC-----------------ACTGTCAGACATTCTAATAACT
s HiC_scaffold_1 141063619 1659 + 233722169 TTCTCTATTAACTTGTCGTATCACTGCCAGTGGACTCCAGTTCTTGTTACTG----GAAGGAATTTGCTGTGGAAAAGCAAGCaatccaacaaatatttaaaaccctcttaaggaaaaactttaaaaatatggtaGGGAGTG-GGGAGCTCTTTCTTAATTTGTTAATGTATAAC----TGTTGGGTAAAGGTTGTCAGTTCTGTATGTTCAGGGTTATATAATATCtttagaaacaaaaccaaacctc-tgcaggcaaagcaa-aagcaaacaaacaaaatgttgtGGGTAGAACCTTTAAGCAAACAGATATATTAAAATTCTTAAGAATTCTGGGAAGTGTGACCCTAAGTATTTGAAATGCATGACTTTTATAAAAAGATGTGGAACCAAAGTGACACATACCACTCTCAAGTTCAAATTCTCTAAAGACTTAACAATGAGCTTCCAGCAAAGC-AGACCTTTTCTAACCGCTTGATATCGTTGCTTCCTATACCCTGACCAACAAACCGTAGGAAATTGATGGTGCTTTAAATGGAAAACAGCAGTTAATTATAACTGGTTAACAGGTTGTTGGCAAAGTTTCAGCATAATGGGTACGTGAGTGTTTCTGTGC-------TGCATACTGAGCAAGGCCCATCCCAGGCTTCCTGGTAGTGTCACTCAGTGCTATGAACTTACTCTGACAGCTAGTGAACAGATAAGTGT----------GTTCTGGGAACAG----GAAATGTGGAACCGCTAG--------------------------CAATTTCCAAGCAGGATGC------------------------------------------------------AAGGCAAATAGAG----CCTGGTACATATT-------------------------------------TACACTGAATTCC--------------------------------------------------GGCTTCTTTGGTCA-----------TTAACA---GGATGGTAGTAAACT---------AAAATAGGATGCAAAAATCCCATCTCT--TAAAATTCTTGACTCATAGAC----CTTTGTCAGGTTATAGG----------------attagaaatatttgaataaaaatagacCCTTTAGGGGAAATAATCCAAAGCTAAGCAGGAGTTGAAAAATATTAACTTTCTTGTTGTATGTTAGATCAGTATTTCTGCTGGCTGCAGCTGAGTTGGTGGAAGACACACAGAGCAGGCAGACTGACACCTAATTTAATTTCAGCACCCATAGGAAAGGGCAG--------TAGGAGATGTTTGTGCTTCATTGTTTGCCGAGGAAGCTTGACCTTACTAAGCAG---------ATTGGTTTACAGTGTGCACATGAGCTTGC------TGTGTGAGAGAAATTGCTACAGGTGCTCATTCCATCGAGTACAGACAGAGCACTGT--TTCTGTTCTCTTCCAGGCAGCTTGAATAACACCACCCACCCCAGAGAATGCTGTCTTCCAGCCTACGCAGAAAAAAGCGTTTGAGGAAAGAATCGAGATTTAATGCCAATGAATGGAACTAATTTAAACCTTGAGAA-TTTCACAGCAGGGAAAACAGAAGGG-AggctttactattttgttttttgttggttttaaatTAGCCATAAAGGTGGCAGAAATAGAGGCGGGCTGGTTTCCGCGAACTCAGTCTGTAGTAGAACACAGCTGTG--CACAGCTACAACT-ACAGTCAGAATCTGAGCTCAGATTTCC-CTTTGGCA-TTAATCATTGTGCATCCTGGAAAGATTCACATAGCTTTCTGAGCCACTTTCCTTACCTGTCCATGGAGCAAATATGTCTTCACTCATACACTTACGGTATCATGAAACTGCCACATATTCTAATAGCT

a score=10165
s chr3           154127207 641 + 160039680 tATTGGGAATCACTTTTAAGTTTGGGGTTCCCTGTATGGCTGATGAATTCCATT---TCCTGGTCATTTTCTACTTCTGCTCTCAC--CCTTGCTACAGGTCATAGTGGGGAGT--------GAGAGGCATACGGG--GAGACTGCA--CTTTCTCATT-CCAGAGAAGTGCTGGTCCTGGATA-GAGGAGATGGTCTTG----AGCATTGAGTTCTTCAGGATGGTGTGACT------GAGGGACATCTGTCTTGGA----------CTGGGCACAGAGAAACTGGCATTTTTTTGCTGTTGTTAAGTTGCAAGTGAAAATA---AACAGTGCTTTGTTAGGAAATCTGTGCTGCCTTACATAGCAGCTTAGCGGTAATTGCTTCTTTGAAATTTATTTGCAGCACGGCACATTTATTGT-CAAATATGTCTTTTTATTTACTTCCTCTTGTCTACCACCCATTGCCTTGATGTCAGAGCTTCTGCGAAGAATTGGTATATTATGTTTATCTCCTTTGAGATGTCTTTTAAATGTAGTTGACATCAATGTGGGTAAAATTCCCACTTACATCCTAAAAT-TCAGAGAA---CGGTAT-GCATACACTATTGTGTCAAAGGCATCTA-----------------GGGCAAATTAGACTTGGACTTTTGAACCAGGGGTAAATTAATGAAAATGAGGAACATTAAAA
s HiC_scaffold_1 141102650 684 + 233722169 TGTTGAGAATAA-TTGCAAGTTTCTGATTCTTTGTGTGACTGTTACGTTAGATTGGCTCCTTcctcatttctatttttctttttgtttctttgccacACACTATTATATATAGCACATTAGAGAGGTGCGTATGGAAAGAGATTATAGCTTTCTTCACTGAAAGGGCAGAGCCCATTCTGGACAAGAAAGGATGGAATTGTCGAAGCACACATGGATTGAATATGACATGACTTGAGATGAAATGAATTGGTCTTCAGTGAGCCCTTTCTTGGCACAGC-AAattgac---tttttgttgtttttaaataattaatgaaaagagGCAATAGTG-TATGTGAGAAAATATGACTTGTCTTATAAATAAGTACAACAATAATTAGTTTtgtaaag---aattacaa-atggcacAAGTATTGCACAGATACTC--------TTATTTCCTCTTCTCTGCTACCCATCGCCTGGATGCTATGATTTTTGCAATAAATATGTACTTTGTATTCCTTTCTTTTGAGATATCTTTCAAATGCAGTTAACATAAGTGTAGATCAATTAAGgaatttcattctaaaatattaaacaaactcACTATAATTTACACTA-AGTATTGAATATATCTGGTAAACAATTTAGAAATGGAAACATTACACCTGAGTTTCTGAAACAGTGATGAAGCAATG---ATGGAgagtattaaaa

a score=9553
s chr3           154132337 399 + 160039680 AAGATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAGATCGGCAAACGTGGAATGA-AAAACTTCCATAACATCCAGGTTGATGGAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGAGCCTTCAGAATTGAAATCAACTTTCCAGCAGA----GTATCCATTCAAACCACCCAAGATCACATTTAAAACAAAGATCTAGCACCCTAACATCGATGAGAAGGGGCAGGTCTGTCTGCCAGTCATTAGTGCTGAAAACTGGAAGCCAGCCACCAAAGCTGACCA---GTCCCTCA-----------CAGCACTGGCGAATGACCCCCAGCCTGAGCACCCACTCCGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAAAAAAT
s HiC_scaffold_1  42821641 408 + 233722169 AAGACAGTGAGCAGCAGGTGTGGGGCGAAGGGATGTGAAGA----------CCTGCTATGACAGAACTGTGGCCATGGTGAGGCCAGGAAGACTAATTTCTTGGTGTGACATTGGCTGACTGTTCTTGCCAATCCTCCATGTGATAAAGAGAACTTCAGGACTGGAATCAGCTTGCTGGTGCATTCTGTATGCACTCAAACCTCCTTTGATcgcatttaaaacaaaaatcacatatgTCGAGAGAGATTAAAAATGGCATGTTTGATTATCAAGGATGTGCACCAAAAATCGAAGGCCAGTGGCAAAAAGTGACCAAGGGTCACCAAATTTTAAAGTTAGGCACTGGAGCTCCAGTTCAATTTGGTGCATCTCCTCTGGCTAACCTGGATTAAGAATACTTAAGTGTCCATAAAATAT

a score=4383
s chr3           154132415 185 + 160039680 CAGGT--TGATGGAGCTAATTTATTGACTTGGCAAGG---GCTTATTGTTCCTGACAACCCTCCATATGATAAGGGAGCCTTCAGAATTGAAATCAACTTTCCAGCAGAGTATCCATTCAAACCACCCAAGATCACATTTAAAACAAAGATCTAGCACCCTAACATCGATGAGAAGGGGCAGGTCTGTCT
s HiC_scaffold_1 182674739 190 + 233722169 CAGGTCCTGTTGGAGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGATAGCCCCTATCAGGGTGGAGTATTTTTCTTGACAATTCATTCCCCAACAGATTATCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAACATTTGTCT

a score=21901
s chr3           154137533 1874 + 160039680 aatagaatagctgttcatgtggtatttacactgttatttccttgatatctcagtggtattataagtaacctatgtgcatagattatgtttaggggacaatacatatatatcacatgcaagcattatgcagctttctttgag---acctgatgcta-caggtttgagtactgcatggagtactggaaccagcctctggaggatgctgaagaagagctgTAGGTCAGctgacccactgacccactgacccactgacccaTTGTTGTGTGTTAACATTCATGGGCTGGGATTTCTTAGGGCAG-GAGAGGTGG-TGTAGAGTACTAGCCATTAAGCTCTGAACATAAATATTTGTTTGCCCTTTGTGCTTTTTCCTAGAAATAACA-----GAGTC---TGAGGATCAAGATGTG-GGTGAGTCAA---------TCTACGTTAGTCTAAGAATCCTCCATGATAGTTTCTCCAGTCATAGATATGTCTTTTCCCCCCCAAA-----------TCTGGGGATAACTAAATGTTCATTCAGAGAAAGGTATCCTTTTTTG---------GCTTTTCTTT-GAATTGAAGTCTCTCACTGTGGAACTGTAAATATTTCCACCAGGAAGAGCATCCCACAGCCACCATGATTATGTGACT-CTAC-TCCCCTCCCTGCATCTTCCAATTTCCA-----TTTTAG-----TTTAGGGCTTTGGCATGCAAGGAGTTCTGTTCAAATCTCTTTCCAACAGTGATCTCCACCGTCAGACTGTGAAGACCCTGGGAGTATC--TCAGTCCTTTGTGTGACAAGCTGGCTAT-CATCATAATTGGCTGCATAGACCTGGGACTTGTACTCGAAGT-GTGGGT-TTGGATATTGT-CAGCTGGGTGGCTTCCAGCCTATGAAATACAGATCTCAAAGCCTGTCCCAAATTAACCGAGTCAGAACCTCCATCCTCGTAAGATTTTCAGAGGCTAACGTGTCACTGGAAGTCTGAGCAACACTGAATTCAGGAATGCATCTCTCCTG-TACACTCCTACTGCCCTGAGATGCAGAGATGGAAACTT----GCTGTGTCTTCTGACATTTACTTGGAACCCAAATTCTTAACTAGAAGT----TTGTGTATGGAGTCACAAAGTTAAAATTTATTCTGTCAGTAATCTGGAAATAAtaaatgtgttcactatgggaataaatatgttaaataataattaaattaattaatttcactta---ttttga---tgtagtaataaactaaaactttacattgtacccgagaaacacacacaattattatttatctgtt-aaaaTCATTACAATTCTAAAATATGATTATATATGCATTTC-TACCTCTGTTATCAAAGTTCCTTTGTTATCTTTTGTGCACTTTATCTATCTAGAGTCTAAATGTTGTTCTCACACTT-----------------AAATACCATTTA---------CACCT------------------TCAAATTTTCTTTTCTTAAAC-------TTCTTAA-------TTTGGTCCCATATGATTCTT------CAAGGCAGGGGATCAAAACAGAGGTTATTATGTAAAA-------------TTCCA-------------GACATTGAGATTGGAGATAAAAAGATGAGAGATGATAATGTGAAAAGAAGTAGATGCCAACATTG-----TCACCAGACGCTTACCA--TTATTCTAACTTAAAATGGACCATGAGACAAAACATTTCACTTTTCAATAAAG-GCTG-GAGTTCTGCCTTCATTCATAAATC--AGCCTCGCAATTAGGAGAAAGCAATTAGGTCTGTAATAAAATCCTCCTCTTTCTGACAAGGTTTTTGAGATAAATGAACCAAGGACGAAGAAGCATCGTATCTTGGTTATAAAATCGTCTAGGGATAGAGGGACCCTTGAGTGAGGAGTCTCCTTGGACAGTCAGGAGTCCAAGG-GCAAGG-CCAGCAGAGGTGTTGCCCCGAAGCTCTGCCTCTTTCTCGCAGGAGCCACCCACCATGAGCACAT
s HiC_scaffold_1 141099000 1913 + 233722169 AATAGAATAACTATTAACATGACATTCACa---------------tatattag--gtattataagttaTCCAGATGTTTAGAGAATA---GGGAGACTATATACATAGGtcatatgcaaatactatgtgaTTTTACTTAAGGGAATTGGGTGTTCTCTGACTTCGATATTCACAGAAGTCCTGGAACCAGTCTTC--------------AATCATATTAGTTCAGC------------CAACTGATCT--TAAGTCATT-CTGGGTGTGAG---TCCAAGAATAAGATATTTTAGGACAAAGAGAAATGGATATGGAGTTTTAACT-------------CATAaagatttatttgccttttgtgcTTTTTCCTAGAAAAATCACCAGAAAGTTCCTTTAAGAAAATGGTGTATGGTAAGTCAGAGTGTGAGCCCTGAGTTAGCATAAGACACTTGCACATTAGCTTATCTGGTAAAAAACACataatt---ctttcaaaatattacaTCTTCTAAGTA-ATATGATTGTTTATTAGAAATTGTGGGTCCTTTTTCACGTGGTAGAGTTCTGCTTCCTAAAGGGATTCCCACATT-TGAGATTGTGCAAGTACCTCCCAGGAAGAATA---CAATGCTCCTATAGGTGTCTTATTACCACATTGGCCCCATACATCTTTTATTCTTCAGACCTTTCTAGATCAACTTAGGACTGTGACAAACACAAA-TGTTATTCAAATTGCTTTCCAGTAAAGATCTCCACAGGTAGATGCTCTTAATGCTGAGTATTTCATTCAGTCCCT----------GCTGTTTGTTCAGCTTAGCTGGC---------------------CTTAATGTTGTGGGCATCAAATATTTTGCACCAGTGTTG----------AGAAAATGAAGAGTCATTGCCCTGTCGCAGACTTCCTGAATCAGAATCTTCATTTTC-CATGATTCCCAGGTGACTCAGTTCAGGTGACATTCTGAACAGCACCGGCTTCTAGAGTTGTTCAGGCTTGGTGCACTTGTACTGCCCCTAGATATACCAATACAAATTTCCATGCTGTGATATCTGACATA-ATTGGTATCCCAAGTGCTCATTTAAAAGGATGATTATGTATGTGGTGAGAATGTTAAAAACG----tattaggaaattttaaattatacaattaTGAACT---GGGGTTCATA-ATTAGGTAAATAGTATATTAGTTGGCTTGACTGAAACTTTTAACAGTGAATTTGTAGATCAAAATTTCATATTGT--TGAATGAATATACTCAATTCATACTTATCTATTTAAAACAAATGCATTTATAAAGTACAATGTTATATGTGTTTCCTATCTCTGTTTTCAGGGCTCCATTATTGATTCTTGCATACTTTACTTAGttacattctattttttctttcaaaatcccTTCATGTTGGGGTCAGAGatacagcttagcagcacagcacctgcctggcgaatGCAAGGTTCTGACTTttattcctgatacaaaaaaaccCTCAACATAAATTCTATtctctgatgtttttttttttacaagacaGAG--TTAAGCAATGTAATATTTTGTAAAAGATATTTGCAAATTTCCATATGTAACTTTTTAACTTTAGGGTTGGG-----CTAGGCGTGAAATACATAT-TGGAGAACAGTAGAAGCCAAGCTTGGTAGCTCATCAGAAG-TTATCAAATTGTTCTGCCTCAAAGTGAAtagtgaatcaaaata----aattttgatcAGTGTGATGTGagttatgttttcattcatatgCCTTGTCTTCACCACAAGGGTAGAATAATTAGATGCATAATAAACTCCTCATCTTTATGACAAGGTTTTTAAGATGAATGAGCCAAGGAAGAATGAGCACTCCACTTCTTATATGAAATTGTCTAAGGCAAGAAGGACCACTCAGTAGTGCTTGTGCCTAGATGGACAGGGGTCAGAGGAGCAAAGTCCAACCCAGGAATTTTTCC----CTTGAACCCTTGTACAAAACTCCCATCCTCCAGGAGAACAT

a score=15741
s chr3           154141154 650 + 160039680 ATCATTTGTATCTTTAGTATTGTTAATTTTATGACACCATAATTTTATCTAACTAGACTAATTTTATGTAGACTGAATGGTATTTT-GTGATGTGTCCTCATTACCAAAATGCCAAGGTTAAAATATTCTATAATTTTAATTGC---TCTTCTGTCCCACTCAATCATGATGTCAGTGTTAGCTGTAACTGTACCAATAAAAAATTATTGTAAAAATAGATTTGACTTCA---------AGTGTGGCCC-------CATCTCCAGGAGTTAGTGTAAATGTTAAGGAAAAGGACATACTTCCTGAGGCGAAATCTGTTATGTGAGGCTGACTTGTGGTTCATTAGGAAAGTTCTCTGCCTTTACCGTTGAGCGTATACTCCATATGGCAATACAGTATGTTTTTCTCTCTCAGAGAGGGAGGGCTGCCTGTTGGCAGAAAATGTAGCGATCAGAGATTC-CTCCTGTGTGTGATAAGGAGCTGTTAGAAGGCTTAACTAATGAGAACACAGTTTCCTGCAACTGTGTTATTAGTTTTCTTACAACTACACTCACTCTCTTCACTTCTTATGGGTTAAGTCACTGAAGAGTACACACCCCTATTGGTTCATTTTTAAAATGGTTTGGTCTAG-TGCCTAATGCTTTAAAAATTATTAAAATCAGATAAAGTAA
s HiC_scaffold_1 141077372 637 + 233722169 ATTACTTATATCCTTagcattct--gttttattttctcatggtgATACTCACCTGATCTTATTTTATTTGtgctaaattgtatttttattgaataTCCTCATTGTCAAAATGCCAAGGTTAAAATGTTCTGTAATTTTAATAACACATTATTTTCCTCTCTCACTCACGGTATCAGTGTCAGCCAGAGTTATAACTATTGAAAATTCTTGC-TTAATAGATTGGACTGCACATGGAAATAGTGAAGGCCTTAGAGGCAGCTCCAGGAACAAATGTAAATTTAAGGGAAAAGGACACATTTCTCTtggcaaaatattttatgtaaatttgaCCTGCTATTCATTGGGCAAGAGCTCTTCC-TTACCTTTGAACTTTTATATCCAATGGCAATCCTATCTGGTGTCCTCTCTCGGGTAGACA-GACTGTCAGTAGGCACAAAATATTGCAATCAATTTTTTGTTCATCCGTGTAAGAAAGAGCCTTTAGAA-GCTGAGTGAAta-----acagcaaccaaaaaa-----aaatgactcTCTTACAGCTAGATGTTTCATTTTAGCTTTGGGGAGGTTAGTTTA------AGT---------TATTGATTAGTCCCTGAAATAGTGTGGGCTATCTGCCTAA---CTTCCAAATAATTAAAA-CAGATGAGGTGA

a score=8135
s chr3           154143918 451 + 160039680 GAATATACATATTTACATTCTGTAGGAGAAATTACCTATA--GATTTTCCAACATGAACCTTTGGCTGTCTTTGCAACAGGAAAACGTGCTATCCTGGTAAGCTTGCTATCCCAGCCTGAGTCAGACCCAGCAGGAGGAGAGATAAAAGTG---ACATAAAGGCGATCTGATTAAGT-AGAGAAGTTCCAACAAGTAGATGGGTAAACTGACATTCCTTCTGTAGACGTCG----TTCAGCTATAGATGGGTGAAGCTGATGTTCTG---GCCTGAATACCGAGAGCCTGCACTTCTTTCCTCTGCCAAGCACTAAAGCATTGTCCATAACTTTAACTTCAGCAGCCTTGCCTGCTTTGGGCTTCCAGCCTTGCTTTAAGTTCCAGGAAGGGTCACGGAGGAGCAGAATTTCCTGCACACTGAATGATGTCAGTCAGAAAACTCTAACCTATTCAAGTAGTTCT
s HiC_scaffold_1 141117540 452 + 233722169 gaatatttatatataaactaTGCATAAGAAGGTATCTCTAATGATTTATATGCACAAATCCGTGGTCATCTTCTCAACAGAAAACCGTGCTTGGGAAATAAATATGCCACCCAAGACTGGGTTTGTCCCAGCAGGTGGGGAGAGAAAAGGGGGTGCAAAGAGCAGa----attaagtaaaagaaattcCAATAAATTAATCATTAAAGTTACACTGCTCTTTCTAAGGTAGTTATTTCAGATGGAGATAAGTTTATATTACATTCTGGAAGTATAAAGAcccagaaatt--atttcttttctctt---agtcTTGAAGGATCATTTATCACATTAATTTTAAGAGCTCTG-ATGTTCTTTGCT--AAGCCTGGTTTAAAGCCTCAGGACAGAGCATCATAGTATGTAATTTTCCATTCATTTCAGGAAGTTCTTAGTTCATTACTAACTTACACAAATAATTCT

a score=22239
s chr3           154163376 1095 + 160039680 AATGAAACTAAG-GTATGGGGTGAAGTTTTAG---------CCCCTAGGTTAATTTTGTTCATAATGTTATTTTTGTGGAGAAACGATTTCCTTTAAAAGAAAATC-TCTTTCTGGATATGTCTGGCTAACTGGTCTTACAATTTCCTTTCAGGTGAACAGTGTCAAATGTGCATACAAGAATTGAGTCAATAAACTTGCATTATTTTCCTTAATCGTCATAAGTTATTGAAGCCAGGGTAGTTGGTTTGTATGAGGATAGCACACTCACTCTGTTAACTACAGTAACAACTAGCTTGCT--CTCTAATAAATGATATT-AGTGATTCTATTATCGTAATAA-TCACATGATCAAAAATCAAAA-----------GCTTATAAAA-TATGATCTAATTTTA-GTTTTTAAATTTCATTTT--------AAATGGGAAATGTAAATTGTATTCA-CCAGCTGAGCCATATGACAGAGAAGCTCTAAGGCTCTTCATCTGGCCTCTGTGTCTCTTTATTCTGGAGATGTGATCA----------------------------------------------GGGAAATAAAAACATTTGCATCACAATACAAATTCTGCAAGCATGC-AGGGTAGGATGGAGCCATTATGTGCGAGTTGTCCATGATATATGAGAGCAGCTAAATCTTACTCTTTCACAGAGAAAGTAGAATATTCTGAGCTTAAATATAAAGCAACCAGGACTTGCAATCAGAAG-----------GCAGGTAGACTTGACAATGACCTTTCA-----------GCCTGCC-TCTCATGTGGTGATGTACCTACTACAACAAACAAAAAGGGAGCCTAAATACTTTAACATCAGTTTCAACTATCTTTAATGTAAGAAGCAGAAAATTGCAGGATCAACAAAAGCTGTTAGCAGCTTTCAGTCTGCTTTTTCT----CTCTACCTA--TGAAAGATCACCTGTGGTTTGACA---------------GCCAACTGGTC--------------------------TGCCTTTCCATCCTCTATTACATATTGATAT-----ATGAGTGAGCTAGAGTATACCAGCATGcccttctgtgcctcagtattcccacttataaaatggcatgatgataaagggatatttcacagaaata-tgggagcat------------taagtaaagaaagacagt--------acagcTCAAGAAAATTCAGTTCACATTATGTTCTATCTGGATCATTGTGGAGTGG
s HiC_scaffold_1 141141639 1243 + 233722169 aataaaattaaatgttttagatgattttttaaaacaaatttcttatGGGTGAGTGGTAGTTgtatcattattttgtttgagaAACAGATGGCTTTGAACGAGAAGAGTCTTTCTAAGCATGATTGCCCATTTTATCTTGCCATTTGCTTTCAACCGAGCCCTGTGAAATCTGTACCCAAGAATTGAATTAATTA-CCTGGACTGTTTTCCTTCGTCTTCATGAATAATTTCTAGTAAGGAAATCGCATTGTATTAGTGCA----ATGCGAAGTGATAACTGTAATAACAAATATGTAGCTGTCTCTTATGAATGTTTTTCAGCGATTCCATTGTCCTAGTAACTTTGgtgatcaaaaatcaaataaaattaagatgcttataaaaatattaactggctttaagtttcttcttttcatttttttaagtaaaaaaaaaaaaatgaattggcTTTAACTAGCTAAGCCATCTGACAGTGAAGCACTATGACTCTTTAGCTGGCCTCTCAGTCAATTTATTCCAGAGATGCAATTACAGGGCTTGAGGGCCCCTGTGAAAGCATTGCCTTGGACTGATttgtaggaaataaaaat-tttgcatCACAAAACAAATGCTGCCTGCACATGGGGGCAGGGTGAAGTCATCACTTTCCGGCTGTCATTACTAAAAG-GGTCAGTTAAATCTTACCATTTGACTGTGGTGTTAGTGTATTCTCAACTAAAATATGA------CAGGCTTTCTAATCAGAAAGTGTCAGCCTTGCAGACAGATTTGACAGTGGCATTTCATTTACATTGCTATATGCCTTTTCACTTGGTGAGGTGCGTATCACACC---CACATTGGAAGTTTGCCTAGTTTTAAACTAGTTTTGCCTGTCCTTAATGTAAAAAATGAGTGATTACAGGATCCATTTAAACTGTTTACC-CTTTCAAACTGTCTTCCTTAAAACTCCACTCATCTATAGAATGACTTTAAGATTGTCAAATGAGTGACTTCCTGCCATGTGGTCCAACACAGACTTTGAAGTCAGATTGTTACCTTTCAAACC-------CACTTTGACCTCAGGGCTGCATGAATTAGAGGAAATTAACTCACCCTTCTGTGCTTC-----TACTTCTCATCAAATGGACTAATAAT---GGCAGAACCCACAAGATTATTGGGAGCATTAATGGTCTTAATAATTATATAAGGACGGTTGCCTGGCATAGTTGATGGGAGTACAGCTCACAGTGGGTTCTACCTGGAACTGTGCAGAATGG

a score=52197
s chr3           154168539 5869 + 160039680 [encoded data, 6591 characters]
s HiC_scaffold_1 141147471 5776 + 233722169 [encoded data, 6591 characters]

a score=8680
s chr3           154178317 1051 + 160039680 atttgccccaaagcccctctcgacaaccccactttccatccactctctgacatgc----taattgcatttactttataatatttatcatctctgaag---acttctttttctagattacatcataactgtgttgtcacggccatca-ctctgtgagaa-caaggaccttg--------agtgttttgttccctgG----AAAAGTCTCTTGACATACAACATCCATTTGTTGAACAGTGGAATGAACTGTCGTCCTGGATTCAAAATGATGGAGGGCTAGGAAA-----------------------GACAATGGGCCATTTAGAAAGCCACTTCCATGACCCAGCTAAGAAATGATTAAAA-------------------CCTGGGGGAGAAGAGAGCTAAG-ATTAATACACAGGTAA---GAATCTACCTGGCTTTGGACT-----CAGGCTCTGTGTGGAGGAGAGGCTGGCAAGGCATTGTCTGAGATGTGGAAACACTTGCTGTGCTCTCGGAGGTGAGGAGGCTGGGGCAGCAGGCA-----------------GGCAG--AGGTTCCTGCACTCCCGCATTGAAGTGCTTATCTGAGGAAGCCTGGCTATGCTTAGGTACCTACCAGATATGTAGAAAGAA--ATCT-----------AAATATATGTTGGAAGCTCTATG-GACATTGCCTATTTCTTTTAACTAAACTTTCTAAGGATAGGGGAATCTGTGGAAGAATATTAAAGTCCCCT-------GGAAATCACCTCATTTCCTCTAAGTGATA----ACGCTGGCTCACCTGTGAAAGCCTTGGCCAGGGGTCCCTCCTGGAGTGGGA----------GCCTGTGTAATACTGCGCCTTACACCACCAGTGTTTCCT--GCTGGCTCCCCCACTGCTCCAT------GGGCTTCTCTGAGGCCTGTGTGTGTGAGAGCCagggagggagagagagagggagggagggagggagggagggagggagggaAGCTTTGACTGTGTTACTTTCTTCACCCAAAATTCACCAGTGATCTC-CACTGCTTCCCTTTGACTTTTAAATCCC----CACCCAGTCTTGAGCAGAACATGTCCAT-----------ATTTtctcttttcctccc-----ctctccctctcccctcccctcccctcccctcccctcccctcctctcctctct
s HiC_scaffold_1 141156942 1101 + 233722169 ATGTGGCCAAGAGAACTTCATGACAAACAAGTTTCCCCTTCACTCTCTACCAAATCATTTAGTTGTATTTACTTTATAGAATTTACCACTACTGAAACtcactttgtttctttgtgtaCAAGATGAGTGTCTTATCTAGAATATAAGATCCTTGAGAAGCAAGCACATTGTTTTATTCACCACTGTATCCCATGGGCTTAGAAAGCTCACGACACATGATACTTATttgttaaacaaatgaatgaggtACTGTCCTATGTATGAAACTGCAGATTGATTGGAGAAAACAGAAGTTGATTAGAATGCAGGCAAAGGACCATTTAGAAGACTAGTCCAGGGACTGAGCTGAGAAATGATTAAAACCTGGACTAAGGCATTGCCCCTGGGATAGGAGAAAGCTAAATGGTAACAGGAAGGCAAATTGAATCAG---GGTGTAGGACCTACTGTATGCTAAGTAAAAGAGAGAAACTAGCAAATT-CTGCCCAACA---GATAACTGTGGCTGTATTCAATAAAGTAGGGAACTCGGG--AGAAGGAACTGGAATGTGTCTACAGGGCAAATAAACTCATGAGTTCAAATTTTGAAGTTTGTATTT---TGAGTTTGG---------GGTGCCTATGGCACATTTAGGTGGAACTATCTGGCGGAGTTAGAAATACACTTCTGAAACTCTCTgaaacatt---tatgta-tttaacTAAAGTGTTTGA----AGGGAACTTTTTGGAAGAACGTTTAAgactaataataaaaaaaaagtaaattattt-ttctgagcaATGTTTCCTGATGGCCC-CTGGCGTGAGCTT----CAGGTACCTCTCCT---TTGGGATCCCAGAATGGTCTGTG---CACTGTGTTGTAATTCGT---TGTTCCCTTAGCTGA-----CCACGACTCCACTAAGTAGAGCTT---TGTGTATTGCATCTGTAACTGTC-----------------------------------------------------TTGATCATGTCATTTTCCTCATCTTAACTTCACCAATACCTTCTCACTGCTGAAGAATGACTTTCAAATCCCTTGGTGTGATGTTCAAAGCTTTACAGATTCATTGATATATGTCATTTaatctctttctgcctctgtctctatctctgtctttctctctctcttccttcccttcctgtctcagctctcT

a score=20615
s chr3           154183831 991 + 160039680 TCCACGGTGTGTGTCTGAACTTGTGTCCTACTCACTGAGGTGCTTTGCTTCATTACTTCCCACGTTGCCATGGTTGGCTTGGTTGAGCAAAAGCC-CTCTGGTAGCACTGTGGACAGCATGGCCCTGGCA---GACCATGGCAC--TGCCTCGATCTCCATGCTACTTACTTA-----------CATCGCGATTTGCTTGCCTTAGTTAATGGAACTGTAGATGC-AGAGCAAACTGATGGAAGAACTACGACCTGTCTGTGTGGTGGGAACTGGAAGATCTGGATTAAACCAGCCTTATCCAGAGCAGAAACATTTTTCTTCG-TTTATTTTGAAGATGGTTTACAACTCATCCTTAGACCGCCTCATTATGTCTTTCAGAAACA--GTTCTCAGAGAACGACTAATCAAGAGGTTGGGGGGGGGGCGGGTGTTGGGAACACATTGGGAAAAACAGATGTTTGCTATTTAAAGCTCTGCAGATGATTGTTCATTCTGTTTCTGGTGAAAAGACGTTCTTATCCACTAAATAAATATATTGTCTTTGAGTGCGTGCCCTTCTGTGTCATGGCAGTGGGGCATTTTCGCTGCTGGCGTTGGAAATGAAAATGTTCTGC--------TCATTTTGCACAATAGGGAAG-GAGGGTGAGGAAAGCATCGGTAAAT-TCACTCTTCTCCACCTGCCTACCACGAAGCAGGTGAATGGGAAGGTGCTGAGGGATT----TTGGGAAATACTACCAGGCTGCATGTCCTTGGAGGTCAACAAGCATAGCCGAGTT----------TGTAGGAACACTAAAGCTGCGATCACAGGTAGATATAAATGTGAAGATTTTAGC----------------CAAATGGAAAGAAGTGGGAGAAAGGAGCCGTACCCATGATTACATACTACACTGACCTGGGAGAATTTAAAGGAATAAGCATTGTTAAATATTT---ACAAAACCAGATTA-AATAATTACCCATTCAATTAGCAAAGAACTTTAGAGTTTTTTTTTAGTTCAGCTCCCTGTTTATGGGAGGAATAA
s HiC_scaffold_1 141169589 997 + 233722169 TTCATGATGTGTGCACGCATTTGTATAATGCTTACAAGGATGCTGAG------GACTTTCGA---------GTTTGGCTTAGTCAAGCAAAAGTTGCTTTAATAGCTGCACGGATTTTGTTGCCATGATATAAAACCATAGTTTGGTGTTTTCATTTATCTGCAGCCCATTTGTCATTCTATATCATTCTTCTTTGCTTGCAGTGTTTAACTGAACTATTAATGTGACTGCAAATTGTTGAAAGAATTATTATTTGTTCATATTA-GGGAGCCTGTGGATGTGGCTTCA-CTATCCTTACCGGGGTCATGAAtagtttccttctctttgtttGGAAGATCATTTAAAACTCATCCTCAAACAGCCTCCTTATGTCTCTCAGAAATATGGTTCTT---GTCCAACTACTCAGAAAATT-----------TAGTGTGTAAAGCACGTTGAGAAAAACAGATGTTTGCTATTTAAAGTGCTACagatgattgttatttctttttctagttgaaAGACATTCCTTGCCACTAAATAAATGTATTGTCTTGAAGTA----------TGCATCACAGTGGTGGGAAATCTTCACTGATAgtcttagaaatgaaaatgttctgcTTAGCTATTCACTGTGCACAGTAGGCAAGTGTGGGTTAGGAAAACACCAGTAAATCTCTCTCTTCTTAGCCTAAC--ATAAAAAATAGGTAATGGAAATGGCCCTGAAATACTAGCATGTGGAAAGACTTCAatg-ggcatttttaaaaaaaccctcaaaattgGTTTGGTTAATTTTATTGTTTGGAGAGATTAAAATTTT-----CAG--ACATATAAATGTTACAGATTAAACACCTGATCCATATCATCAAATCGGAAGGGGC-AGAAAAATTAGCCAAAGCTTTAATTATTGGTTTAATTCAGCT--AAGAATTTA---GAAGTAGTATTGTTTAATACTTTTGTTGCAACAGGGTCATAATAGTTATCTGTTTCCTCCACAAAAAATCTTAGAG--TTTATGTGGTTTAGCCTCCTGTATTAGGGTGGAGAAA

a score=23153
s chr3           154188407 780 + 160039680 CTCCTTTTCC---TCCTGGTTA--AGATAAACTTATAACTGAAAGACCTTAATAAAGCTAAGAATTTTCT--------------------------GATTGGTAGATTTTGTTTGTGCTCATGCTGCAAACAAGATTGAACTACAAAAGC-TTTGCAACAAAACTCAACAAATGTATATTAGTGTGGAATTATGTTTATAAACCTTTCTGCCATCCGAGTTGATCTGGCATCTATGGCAAAGTTCATTCCCCAATCTGCTACTCTTGTATTCACAG--AACGTGTTTGCTCAGAGACCAGGGACAGGGAGGGAAAGGAAAGATTGTATTTCTCTTTGGTGCAAATATTAACATTTCTCAACGTACACGGGAGTCTGTGCAGGATCATCTAACGCTAAATAAAAACCAGCACGGAGCACTCTTTACCAGGCTCGCTTCTAAATGTCAGCTTGGCTAGACCTGTTTGCGGG-TTTCCTTATTTGATAGT-TTGATGTGCTTGTGA-CAACGGAGCACATTCCTCTGAAGATTTGCAGATCTGTAGTTATAGAGAGACTGTGGGATGTGGCATGGCGGGGGAGGGGTTGTTGGCAGT-ATCATTGGTGT--GAAATTGAACTGGGTGTTTACAATGGAGGGTGCTACGTTAATTTTAAGTATTGGTGCTAAAGTACAGGACACAGGCTTTGCCCTTTATATTACTACAGAGATCATCTCC-CACGTCTGACAGGTGCCACAAATGCTGTGGAGACCTTGCAAGAGGGAGGACAC-AAAAGCTGACACTGGCTATGTGCCCCAGGCTAAACATGAGGCTTGGGATA
s HiC_scaffold_1 141175742 805 + 233722169 CTCCTTTTATAAGTATTGattattaaataaatctataa---acatatactaatacagCTGAGAGTTTTATTCATCCTTTACTATCATCTGTGAGTAGATTGATAGCTACTATTAAGATCCACACTGcaaataaaactatattaaaaaaacctttgcaacaaaataaaaaaaaaacttatcaaCCTGGGattatgtttataaaattttctaaCATCTGAGTTGATATAACATCTTGGAAAAATGTCATTTCTTG-TCTGCTGCTTATGTATTCAAAGGGAATGTATTTACCTGTGGTTTGGAGGTAGGGCA-------AAAAATTGTATTCCTCCTCTGTACAAATATTAATGCATCTCCAAATACATGGTTATCTGTACAGAATCACATGGTGCTaaataaaaatcagcataatACCCTGTTCACCAGCCTAACATTTAAATGTCAGCTTGGCTAGATTTTTGTGAGGGCCTTCCTTATTTGATAGTCTTGATATAATTCTTAGCAACTAAGTATGCATCTCTGAAGAGTTATAGATTTGAAGAT-TACAAAGACTTTGAAA----ATATGGCATGGGGAGACGTGTTGGCAGTGAGAGTTGGGGGCAGGATCTGAATTGGGTATTTGGAATGGAAAATGCTAGATTAACTTTAAATATTGGT-CTGAAGCAAAGAAAGCAGggctttggctttgttttttgcGAGGGCTCACCTCCTCATAAAAGACAGTTGCCAAAAGTCACAAGGAAATTTTGCAACAGTGGAGCCACAAAAAACTGATGCTGCCTGGGAATCATGGACCAAAAATAAAGTCTAGAGTA

a score=41234
s chr3           154204777 3429 + 160039680 AAATAAAACCCACTTGATGTTGGAGTATGATAATGTCTAAAAATATTT------CACAGAAGAACCAAGAGAGGATAAATCCTCAGAGCTCTAAGGGAGAGCTT------GCTGTGGTGCA----CTGACTCCCCCCACTCAAGTCTTTGGTTGTTCAAATGCACCTGTCCTGCCTTTCGGAATTGCTAGCT--CCAGGACGCTTCTTGCTTCTTATAGTTGCTGCCTCTCTTTCCCTCCGT--TTCTGTGTAGTGAAC--------TCGGGATGCCTTTTAATTCTTCATTCCTTTTTTGTCTTCAGGACTTGTACGGACGTTTTATGCTGTCTGATCTTCCTACTGTTTATTTTGGGCTACGTTCTGTTAGGACTCTTGGGTGAGTAACCCCAGTTATAGATGATGTTTCCTGTTTGTTAGTGGATTAAGCAACCCAGTATCTCATTTTCAACAAGAGTGGTTTCC---------TTTGTTATTGACTGTTATCTTCTCT---------------------GGACCTATTTGGTCACAGACACAATATAAGATAAACACAGAACAGAGTAACCAAATGCAAGCCCAGGTTAAGTAGGTAAGAG-AGCAACAAAGAAGGAAGGAA-------------------TTTCTGCTTTTTCATTCTCCTAAAGAGCTGATTGTATCTGTGCTGTTGCCTGCTATAAGAACTAGGAGCGAGGTTTGCTGGGGTGATCTATAAACTTGCTTATTCATAAACTAGCCAAGGATAAGGGGCAGCGGTTATGAATTTCATCAGGCAATTCATTGTTTCATTGAACCCTATTCTTTCTCTGCCCTCCAAGGA-AGAGGCTCgtttttgttgttgttgttgctattgttgttgttgttAGGGTCAAGATTTTTCTAGAATACTAAAACAAAGAAGTGGAGCACATAAAGTTACCTTAAGGAAACAGCCTAGAAAGAAA-ACAAAAAAAAAAAAATCATGTATTTTTCCTTTGAAAC--ATTTTACAGTTGTAGTCACTACACTAGACTGTTCTGCCAAAAGGTATGAATCCTGCCTTCTGGGTATTGACTTAAGAAAATGTGATTTGTCGCTGTTAGGGTAAGAGCTATGGAAATCAGATATTAGC-----AACGATAATT------------------------ATGAAGAGGCTTGAA----------------------------------------CGGTGCCACGGAACACTAT--------AGAACATTTTG------------------------------------GTCTTCATTTTTATCCTCTAGTAAGAGAGGTGCCCTAAAGATGGTACTAAGAAGCAACTCCCGAAAGGTAATCTCCATGTTACCATGC-CAACTATTCAGAATCGGAGAACTCAGAAG----------AGGAAAATAGGG--AGAAGAAAGTTTTACAGGAATTA--ACACAAAAGCAAATACTATGCTTTTACTAAGTGTC------------CTTGTTCTTATTTTCACGTTAGAACTCCTAAGCATTAGGGCAGACTGGGCACACCCTGTAGATTG-------------------AACACTATAGAGTATTTT------CACTTACAAGCCTGC-----CTAAGTTCAGGGCACATTTTTCT--ATCGTA----TTTGGCTATTTTTACTTATTGTCATATAATTTAAATGTGTTGCATGTGAGG-GGAGGATTTGAAGCTAGGCAGGTCTAGA-TTCTTACACTGTTCTGTGGGGTAGAGAC-----ATCTATTTAACTTATTCACT--CATTGAGAAGACAGAAACACTCTCGATTTTCAAGGCCAGTTGTGAGGGACGAGCAG--CAATGTCTGCACACGTCAGCAGTGCTG-GTGAGAGTCCTAGACAG------------------TGCATAAATAACTTAGTTGCAATCAATTT------GTTTT---AAATGAGACTTACAGTGTTGTCTTTATTACAATGCATACAAT---------------GAATGTACACAG--GGACTCCCCCAAAGGTGCTTGTTAGGAGAGGAACCTTTCCA-TGCAAGGCCTAACTCCACAGTAGGTTGAGTCTCCTCAAC--------------------------------------------------TATAGGAAACGCCAAAGCTGCCTATGTCCCCGGCAGGCTCAGCAGAGGAGGGCCCACCATAGTTCCTTGTGAACCA------------------TTTTGGTCAAAATCTCCAGATTCAATTTGTAAATAGTTTAATTTCCACAGG-AAGTTGGAGACTAAATGTTCCTC----AATCGAACTCAATATTCAACATTAA--ATTATTCAGC------ATTTCTTGCAAATTAATCCTGATGCTGATGCTAGTAT------CAAATGACTCAAGAAATTCACTAAATATCCACATACTTACTTTATGCCTCAACTATAGCTGGCTTTGTTGGTTTGATTTCAAAATGTAAACTTAATCC--CTGCTATATTTAATGCTGGGCTGGA-TAAGATTGAAGGAATACAGTTGGCTGGGGTGACTAGACGTGTGGAAGATAGCTTTAACACGTAAGAATGAACGGCTTCCCTTGAATAGCCACGTTCACTGCCGTGGTGACGTTGGGAGCGTGGTGGTGCCGGCCTTCTCTGTTAGACCATGGTCCTCAC-GAATTATCTTTTATCCATAATCTTTTCAT----GAGTTTTAGCGTGTTtattagttaccttctggttttgtaataaaacatcacactcacggcaactcataacagaagagcttattgtggcttatggttctggaggataagggagtgaagcatggcggcaggaagcagagaaactcacctctcagcaggagcccaagcagagagaaagcgggaagcttcccccccccccccccccccccccccccccgtgtaaactctcaaagccctcccactggcatgggcttcttcctacaatgatgcaccagctaaacctccccaaatagcaccatcatcttgggggccaagtgtttaaatatccagtcctaaggggacatttctATTTCTCACAAAAAAATTAGTGGGGAAGACCCTGAGCTTTGTGCTTTGCTGGATGTGGCCAGCAGAGGTAATACTTGCATGTGAGAAAGGCACTTAGCATTCTGCTGATAGAAAGAAGAATCTCT-CCAGAGTGGATGTAGAGGCTCTGGGTGGAAGGAATCCAAGCTGCTTGAGTGATCACA-TGACATTTATGATAATGGCGCTCTT---CCCTTCTTCACTGTGGGGGATTGAACAGCAACTGCTGGTCAATTATTGCAGTAACTAGAAAATAAGAATAGGAATTCTTGTTATGCAAGTTGATCTCTGTAAACCTTGGGTTAACATTATACATATAAAAATACCACGATT------TTCAGTTTATTTTT--------------------------CCAGTTGAATGGGTTAGTCCA---------GTACTTAAAAAGTACCTCAACTTGGAGCCCAAAGTCAGTTTTGGTTT------TTGATGTTTTCCTGGAGTAATTACTCTTATTAGCTGAGAAGATAGATAGGGG---TGTTTCTGCAGATAAGCCCAGAAGTTTGTGGTCCTACTGTGAGAAACCCAAAAGTAATGAAAA----ACTTTCTGAAGATGGGGTGAGGAGTCTGAGCTGGGCACCCATGGTTAATGCCCTCTGTTGGAGA-----------------------TTTCTGTCTGAGAAACCTCAACTGGAAGCCAAGCTTTTCTTTAGATTTCCAACTCCTCAGATTATGAGCAAAACACAAGCACATTAAGTCAGTGTACCTGAAGGAAAAACAGCCAAGAACCAGA
s HiC_scaffold_1 141198770 3417 + 233722169 aaaaaaaatctacttgaTGCTGATATACTCTGCTCTCTAGAGATATTTGTAAAACACAGAAG---CTAGAAGGAAT---------------TCAGAGGGAGCTTTTGTAAGCATAGATATATAACCTTGCTATTGCTACAAAAGTCTAGGACTACAGAACTATATCTGATCTACTGTTCAGGATTATTGGATATCCAATA--------GTGTATTACTGtcatcttttttctccctttctgtatttttgtgCAGTAGACAAATCATTTTGGGATCACTTttaatcctttcttctttttctgtctttaggaATTGTACAGATTTTGTGTGCTGCGTGATCTTCCTAGTGTTTATTATGGGCTACATTCTTTTAGGACTTATGGGTGAGTAAATACAGGTATAGAC--TATTTATTGTTTGCTAATGAGACAC-TAAATCAATGTCACAtttgaaacattattttcttcCTGAAGTCTTTTTACTATTACTTGTTATCTTTTCTGGTTAGGAATACTCCTTATCAGGACTCACTGGGTAgcagacata----aaaataaacacaga--agttTAGTCAAATGCAAGTCAAAgttacttaagtaaatgcaattacaaagaaggaagaaaagagctttttaataataatttttatcctttaaattcTATTAAGCATCAAATATTCATTTTGCTATTGACTA--ATAAGTAGTAGG-GCTAGATCAGTTTGAGTAATATGCCAGCATGTCTTTCTATAAGCAAGTTAAA---AAGAAGTAACAATTaagaattttacaaaataattcatTGACATA-CAAGTGTTCTATTTTCTTTGCCCATGAGAAACAAATACTC--------------------------TGTTATTGTTAGggtaaatatttttctagaaagtgaaaacaaaataaagaaaaccagaTGTTTTATTTG-------GACTTTTAAAGAACTATAAAAGAAACTGGACTgcatattttta---ggaaaatgatttcaCAATT--------TGTATTACAC-ATTTTTCCCAGAGACATAAGTACTGTCCCTTAGGTATTAACTCA-------------------------GTTGAAGGCTGTTAAAGTCAGATATTAGCTCTAATACCATAATTAATGGTACCGAGTTAATGTACACAATGTATTAGCATAAAGTTGTGGGTTATTAAGGGAAAAATGTAAGTTTCTTTTCCCCCGAGTTAATGTACACAATGTATTAGCATAAAGTTGTGGGTTATTAAGGGAAAAATGTAAGTTTCTTTTCCCCAGTTCTCAATTTTATCTTCCAATAAAGGAAGTACTTTAAGAAGAACAATTAAGAATAATCTCCAAAATATAGTCTATATAATACCAAACAAAACTATATAGAAttggagaattaaaaaaaaattaagacaaaagaatagggaaagagagaagaataaaagagCATAAGACACAAAACTAACTAATATACTCTT-CTAAATCTTTCAAAACATTTGTTGGTtcttacttaaatattttagtttgtaAACATTAAAGTAGATAAAGCACAGTACATAGTTTATAAGTTGGATGTCatttataatacaataaattttCTTATACAACAAGTAGAATTTTACTTCCTCTAACTTTGGGACATATCTTTCttggttttataattttgattatttttact--ttattatagaATTGAAATTTGTTGCTTAAGAGTCAGAAGATTTAGAATCAGGCAGATCTGGAGTTTTTAACATATTATTTGGAGAAAGGACCAGATAGTTATTTGACCTGTTTTCTAACATGAAAAGTACAGAAATATAC----CTTTCAGGGTTC-TTGTGAGAGTTAAATGGACTAATACCTATTTCCACAAACCATGCTGTATATTAGTACTAGGTAGTAATTTACTTCCTACCATTGTATAAGTAATCTAGATGCtctgaattttaataaattttcaaaaatataatttatcttgTTGTTTCTATCAAAATCTATAATTTTACTTATTGAAGTTCGAATGCACATGGAAGAATTTCACAAAAATTTCATCCT------GGAACCTTTCCATTAGAAGATCTCGCTCCGTAATCAGCCAAGCCTCTCTGCCGAGGCCCAGTGCTGATCTCATGTCACACAatggcttttttctttctattttgttggAAAATCC----CTGCCAGTGTCCT--GTACACACAATGAAGGCGTGCCTGCCACCATTCCCTCCAGAATAAGACAAGaaatttgctttttctgtttaagATCCTCAGGTTCAGCCTGTAAATACCTTAATTTGCATAAACAAATTGTGGGAGAAATGTTCCTCAGGGAAAAAAACT--ATGTTTGGTGTTAAAGATTATTCAATTGGGAGATTCCCCAC----TACTCTTGATGCCATTACTTAAACTTaaaacaaatgatttaaaaaaatcactaaatat--aAATACTTTCCTCAT--CCTGACTGCAAATAAGCTTATTGgcttgattccaaaac-caaacTTAATTCTTCTGTTATATCCACTCTTGGACTAAAGGAAGCTTGGAAGGAAATGATTGACAAAGGTTACTGGaagcatttagaat--ttttaacttATAATCATACATCCCTTCATTGGAGGAAAAATG----ATGCTGTGTTGG-ATATGTATTCTGGCAAGCTTTGCCATTTTTGTTAAACCAGGACCTTCACAGACTTGTCATCTAGCCACGATCTTTTCATCTGAAAGTGTTAGCA------------------------------------------------------ATAACAAG-------------------------------------------------------------------------------------------------------------------------------------------CCGTGT----------------------------------------------------------GTCTCCCAAAATA--------------------------------------TGCTGAGTAGACACT--------------------------------------GTTCTTTGTTGGGTTGAATATGGCCAGCCAGGGTAATACTTGAATGCATGAAAGTCACTTAACATTCAACTGACGAAAAGCAGAACCTCTATTCAAGTAGATGGAGTGGAGTCCGGTAGAAGGTAATCAAAT--CTTGAaagatcaaactcacatttatgcTAATAGCCCTTTTTTGTCCTACTTCCCTGATGG--------------CTGCTGTTCAATTATTGTACTAACTAGACAA-AAGAACAGGCATATTTATTATGCAAATTATCTTTTGCTCTCTTTGCATTAACATTATGTGCATAATATCAGCAGAATTTTAACattcaatacatttttatttcattttctttctaaatggaTAGCTAGTTGAGCGGGTTAGTTCATTGATATCTTTACTTAGGGAGTGCTTGAAATTGGAACCCGAAGTTAGTTTCAGTTTCATTTGTCAATCTCTCCCAGCAGTAATTATCCCTACTAGCTAAGAAGATAGGAAAGTGACAAGACCATTCATATAAAACCTGGAA--------CCAAGTGTGATGAGCACAAGCCAACTGGAGAAGCCACTTGTTG-AGACCTGGTCAGCAGGCTCAGCTGCACCCCAAGGAATAATTAGCCTAGTTTGAAGGATGACTGGTGCCCAGTCAACATCTGATGTGTGAGAGACCCCAAGGCAGGGCTAAAC-CTTCTCCAAACTTCTGACTCCCCAAACTGAGAACAAAATACAATGGCATTAAACCAGTGGATTTGTGGGAGCAGAAATCAGTGAGCAGA

a score=25992
s chr3           154210615 751 + 160039680 ACACTTCTGTT--TTGTAAGTCTTCCGTCTAAAAAGGGCGTATTTGGTTTCTGACTGAGATTTGAGCTGGTCTTTAAGCACCGGATGGTTTTAACTTTTTGTTGGGTTTTACTGTGCACATCTGTGCTTG----CAAGAT-----TTCTTGAAGTGTTGTTAGCATAAGAGGGACTGGCTTGTACCCAAGGACTCCACCCTAAATTCAGCCCTGGGTGTAGGAGTCCACCTGTGAGGTAATAAATA----TTTTCTCACCCAGGCCCCGG---AGACAGCTGCTTCCCCATGCGTTTCTATGGCAGCTCTGTCGCCATTGAGGATCTTCACATTCAGCTTCATGTGTCCTATTATCTGCTCCACTGCATTTGTAAATTGCTCGTGTTAAAGAGCCATAAGCACAATCTGACAGGCCTGTTCCTCACATGTTAAAACAGTTAAGTTGTACCTTTAAGGGGAACACACTAATGATGTGAGAGCCAACTTCCCTAACCTGTGCCCAAGGACCAAGGCCGGCCTGAGCTGCCACTAACATACTTATGGTTAGTTTTTA--------TGTCAACAGTCAGGTCTGAC--CATTTTCTCCTTGGCAGAGGGCTTTCGATGGCTGC---TTCTCCACTCCA--CTAAGAGCACAACAGGTGCACGCTTTGGGAACCTGGAAAAGTCAGAGAGGATGCTAGATAGTAGC--------------CCACATTCTCCAGGACGGTCAGGGATGCACATTTCC-TCAAGATGAGTGATGAGATCATTTGCCCAAATAAGGCTTCAACTGTC
s HiC_scaffold_1 141204674 774 + 233722169 ATACTTCTTTTGCTTAGAAgccttc-attttaaaagaaaacatttagttt-tGACTGTAACTTGAGCAGCTTTTTAA-CTCGAGGCAGATTTTACTGTTTGTTGTGCTTTG--------ATTAATGCTTGTTTTCCAGATGCTATTTAGTGAAATACTCTTAGCATAGGAAGGTCTAATTTGGACTCAAGGACGTGACCCTAAACTCACCATTGGATGGAAGAAGCCACCTGTGAAATgataaacaatatttttcttaTCCAGGCAATGGGCTACAGGACTGCTTCCAAAAATGTTTCTATACCAGCAGTGTCATCAACACAGATTTTCAAATTCGGTATCATGTGTCCTATTATCTGCTTCATTGCATTTGTAAATTGCTTGTGTTAAAAAGCCATCAGCACAATTTGGCAGGCCTGTTCCTCACATATTAAAACAGTTAAAATGTACCTTGAAGGGATACAAAATAATGATTTGGAAGCCGACATTCCCAACCAG---CAAGTGTTTAGGGAATGCCTTTGCTGCCCCAAACAGATTTGCAGTTAATTTTTAAGTGTCACTGCAAGCAGTT-GGTCTAATCACATTGTCTCCTTGACAGAGGGCTTTTAATGGCTGCAATTTCTTGACTCAAGCCATAGAGCACCACAGAAACATGCTTCGCAAATGTTTGAAAATGTGAGAAAATGTGAGATGATAATACTTGCTCCTAGAACTTCATGTTCCAGGA-----GCAGACATACATTTCCTTTGTTATGGGTGAATGGG-----TGCCTGAATAAAGTTTCACCCATC

a score=54238
s chr3           154221349 2914 + 160039680 TGCCTAATTCTCGGTTA-TAATTACTTAGAAAAAAATGGTTAAACACTTTAAGACAAAGCTAAAAGAGGTACATTAAGACATAGAGTTGAAAAAAGAAAGTGTTGGATAAATCTATCTCTCTTGCTCTTAGGCTTAGCCAATATGG-AGAAACTGAGGCACCGAGA---CAGTGTAATGAGGGTCTCGGTGAGTGCTGGGCACCCCAaagtcattacacagc---------------------tccttatacttcactttcttcattctggagaataagggCAGGAAGCCA-TGGTGACCAAGAGCTACCCA---------GATCTCACAAGATGGAATTCA-AGGTGAAGCTGatttggcctctgagacagtag--agtgaagtagacaaagggagccttcctgg-tgcttaa------cac-tgaacagagaagcatgggctgatgaGAAAGA-TACCTAGCAAAAGTCCCTCTTCCTTAGTGTCGTCATCTTTTGGAAAATTGATTTTTTTTTTTAATCATCTCTGGTCACACCAGTCACATGTATAAGGGTGATTGGATTATAAGGCAAACTGTCAG-TCCAATAAGTGTGTGTTTGGAGATGGCCAAGCAAA-GTTATCAGA-GCAGAGGACAAAGG--TGTGTCTTCATCTGCA-------------------AAGATG-------GGCTTTTAAAGACTGTGTTGCTGAAACTGGAGAAGGTGGAAAAATTCAGTTACAATAAACAGGCATTAGCTAACTTAGTG-ATAGATATTACTTTCTA------TAGGGTCTAGCTGTCAGGCCAAGTTTTATAATCCACATAACAACAAACAAAAAAGGCGACAAACTTGTGTGAAGC-AGAGCCAAGCATCTCCATAGAAAAT----GCTAGTCCTTAGTAT--ACCGAGGTCAGAGGTGTAGAGTGCTTGTATTAAGCTCTGAGATTATCTGGCAAA-TACTTGGCGG-TCTTTACTGTG----GGTTGCTTCTGC-TGTGCCCTTGTTTGCCTTTTGAATGCCCTATGAAATCAGAGAT-GCTGCCGAATTT-----------TGCAGT-------------GTTTTT-------TTTCACTTCTGTATAACCCCCCAAAGCATTACCTCATTCTGCTTGGTGCAAATCTATCAGCGCTGGTATGAAGTCATTTCTGCTTGAGCTTTAGAAAAGGCGTCTTCTTTTCCAAGTGAGCTTTTGTCTGCTtcccccctctccccctcttcctcctcctccttctAATAACTGTCATTTTCTCTGCGCGTTACCTCATGTTTTGGCTGCAGCCCAGATGAATCTGGAGGGGA---GAAAAGCATGCTTTCAGACCAATTCACGCACATATCATTTTTCTTTTCATTAAGAAATTACTCTTTGAAGAAAATCAATAATGTTCTATGACTGAGGGGGAAGAGGTGAGTGTTGCCCTGGCA-ATTCGAATCTCTCAAATTAGACTGCTTTCAGCCAGATGGTGCTGATGGGGAATTTGTCCGTTTTTGTTCCCACAGCTTGGGCCCATGGTGACCCCAGGAAAATGGCCTATCCTACGGACAGCCAGGGACATTTTTGTGGCCAGAAGGGAACCCCCAATGAGTGAGTATGGCCACCTATGTTTTG-----CATGGTTTTACTCTCTAAGCCGGAATGTACA---CACATCAGCCT-AGTCTCATGGGACCTGGTAGGCAGGCTGAGACT--CAGGAGGAGGT----TTCTCCTGGCTCTTCTTACAGACAGCTGTAAGTGGTTTGGAGATTTTATGCTCTGCATCTCCACTC-TGAT--------------------------------TAGGGAAAATAAAATTA-AAAGTAAGGATGGGACCAGCAGCCATATTTAGAGCATGCCCTTTGGATTGGGCTATTGTGCGGCCATATTGAACAGTG----GTTGAATTGCCTATACCATACTGCTGTTGGGCTGTTTTTGCTATAATGTTTACCTAC-AATCATTCTGACTTTTGTAGTGTT-------CCTAG--GTCTTCAATGAT--------CTTTGGGGGCAATTTGACAACTGTGGACA--------GCACGGGAGGGGGAAGCGGGGGAGGTGCCCAATGTCAATCATAACAGAGGTGTCTGTTTTTGAAAGCATGCTTTCTATTTATTTACCT-AAAATAAAGCAAACAGACAAAACCCACAACTCACAGTTTTAGAAAAACTTTTATCCCTTTCTCAGGGTCCATTTCT-TTCTTTCGCCTTCACTAATTGGGTTGCTGCTAGATCTTCTGGCTCTTTGCAACCTGTTGAGTTTCTGG---CTTTGAATAGCTATG------------GAACAACGAAAGT------CCCATTAACAAGAGGGTTGC------------------AATAGAAACACAA-----TCCAGAATGCTCAG-TTCTGTGTCTGTAGTGCCACCC------------------------ATTACTGAGAACGTGTTATGGCAAGAGATGGATCGATTCATTAAAGAGCTGAAGAATCCACAGGCAGAATAACTGCAGAGAAACCAGAAATCCTAGAAGTTGGAAGAGAGAGCAGGACACCCTTATGATCATATCAAGGCAGATTTGGGGAGTGC------TTGCCTACAAAAAGCCTCTGTA-TAAAGACACCTCAACTAAA-----TTTGAATCCAAGATATA--AAT--GTATTTTAACTTT-----------------------------AGAAAACAAACAAG--ACAAAacacaaa--------cacgcacactcaccacacactcacactcacacaccacaGAACTCACAAGATCCTCAGGTACTTTTAAATGTG----ATTTTTAACAGGTTTTATATAACAAGTCTTCCAGGCTTGATCCCCTGACCCATTTACGTCAGACAAAGAGGTGGCCCCCCAAACTGCAGTATATAAACACTATCCAGAAATGATCTTGCCTAACAGACTATTTACTCCAATACAATGTCTGATAAAGATTAGTTTGAGATAGAACAGATT-TCAGCAATATGT-------GTCAGTTCTGGTCCCTCCATCTTCTGAAACCTAACAGACCCCTTGGGGAAAGTGCCCATGACTTCAATAACCAATTCTGTTCATACTGC---TTTCTAGTTGCATCTGTGTTATCATCGTGAGAATATCATTTGCTTGTATTCCTATAGTTCTTTTTGTAATTTCTTTTTAT
s HiC_scaffold_1 141210079 3097 + 233722169 TGCTTATTTCTGAATTAATTATTATATAGGAAAAAa--------caatttagaataaaaataaaagaga-----------atatttttcagaaaat---------gataaaattctctttttt------aggtgTAACCAAAATGTCACAAAGTAAGGTATAGAAAGAACAGTTAAAGCAGTGTCT--------------------AGAGACGTTATACAGTAAACATGTCATGTAAATGCTTTATTTACagtccattttctttattctgggaaataaagacagaaagataACGGCAGCAGAGAGCTGCCCAAATGATTCAGATTTCATAAGAATGCATTAAGAAATGAAACTGATTTGGCCTTTGTGACATTGGTTAAAGAATTAGACAAAGGAAGCTTTTCTGGGTGCTTAGATACTGCACGTGAACAGAATGGGTTGGATtgatgagaaaaaatattcagaaaaattcctcttttcatattaaaattcTCCTTCAGAA------------TTTTTTATCTTCCCAAGTCACATGGACCACATACATAAGACTGATAGAATTATAATATGAGCTGTCAAATCCAGTAAATGTGGGTGAGGAGATAGCTGGGCAAATGTTGAAAGAAGCAAAGGACAAAGAGATATGTTTCTATGTGCACAGGGAGTGTTAAAAGACCAAGATATTTCCCAGATTTTTAGGAATTGTGTTATTCAAACTGGAAACGTTAGAAAATCTTACCTAGAATCAGGGAATATGACCCAATCTAGTCCATAGCTAttactttctgaatttttataGTGTAGTTGTCAAATCAAGTTT-ATAATTCTTG-------GGGAGAAAAGAGTGATA----TGTTTAAAGCTAAAGCCCAGCACCTTCACAGCAAATCAAATCAAGTCTTCagtttttaagaaatacaaaagtattttatatttgtattgagCTTTGAGATTATTAGGCAAAACATATGGTAACTTTTTATTATGCATTTATTACCTCTGCATTTGCAACTGTTTGCCTTTATAATGTCACATGAAATTATATAGAGCTAGTCAATTTGAATTTGGAATTGTAGttcctgtttaaaaaatttttaaatggttttcatttatgtataacCCA--AAAGTATTACATCATGTTATTTGCTGTCAGTTTACTAGCTCTGCTATGAAGTCATTCACTTTTGAACTCtacaaaaagtatatt-tttgCCAAGCATGCTTTTG-CAGTGTGCCCTCTAATTCACAATT--------------TAATCAATGTCATTTTCTAAGTGCATTACCTCATGTTTTGGCTAGAACCCAGACTGATCCTGAGAGAACAAGAGAAATGTGCTTTCCAACTGATtcatccatattttattttacttttcattaagaaattactctttgaaaaaaatc--------ttcatggCTGAGGGAGAGGCAG-GTGTGTTGCAGAGGTGGATTCTAATAGCATAAATCAGACTGCCTTTGGCCAAATGTTGCTGATCGAGTTTCTGTCCTTTCTTGTTCCTCCAGCCTGGGCATACGGTGATCCTAGGAGACTGACCTTTGCTACGGACAGCCAGGGCCATTTCTGTGGCCAGAAGGGCACCCCCTATGAGTGAGTATAGCCA-ATGTGCTTTGTGCACCAAAGTGCAGCTGTGTAAACTGGAACCTAGAAATCACTTTAGCATGAATCTTACTAGACTTCATAGGGAGACTGAAATTTACAGAAGAGGGTCTTCTTCCCCTG---TTTCCCACAGACATCTGGCAGCATCTGGGAAGTTTTATGCTAGGTGGCTTAAGGCATGATGTAAtaatcatgcagtattttattAGAATGCACAGGAACAATAGAATTCTAAAAGATGGATCAGGCCAGGAG---TTTTTAGTGgccttgttttaaaatactttattagcAGACCAGTTTGTGAGGTGCTACATAGAA--GCTGGTGCAGTA-----GTTTGAGTCTTTTCATCACAGAACCTTCTGATGAATTAGCCTACCTTGCAAAGTGATGGGCACACCCAGAAGTCTTCAGTGCTCAGCAGGACTTTCAGGGAAACTTGACTTCTATGGTCAATATCCCCATATAGCTGGGAaaagtt-----tctttctattgttaaTCACAACAGAAGTCTCCATTTCAGAGAACAAGGTTTATATTTCTTTACCTGAAAATCAAgccaccaagaaaa---caaaaactgcagttttagaaaatgttttgtttttttctcctagttcatttctcttctttcttttgaacC--TGAAGTTGTTGCTAGATCTCCTAGCTCTTTATAACCAATTCAGTTTCTAGAAAAGCTGACTTGTGAtgataaaaaaaagcaaacaagcaaaataacACCCTCCCTAGCAGAACTACTACtgccaaaatacataaataaatagaaaattaaaaagttctaGAACACTTTGATTTTGT---TCTCATGCCATTCCCAGACAACTGAATTATTATCAGAGTTACAGAGA-----TTAAAACAAGA--------GATTCAGGAAAGAGTTATCAAATTT-TATGCATTACCATTTTAGGCACTCAAGGAAATCAGGTATTTGGAGTAAGGAGAGAAAAATCCTTA--ATCATTTCAGGGTGAGTTTATAGAAGACAAATTTATTCCTATAGAAGGTCTCCCTATTACAGACAAGTGGactaaattctgttttaattctaTTTATGGTAATTCTTGTTTTAATCTCAGTAACTTGGAGAGTCTTGGATATTGCTGAGAAAACTTTCAGGCTATAAAGGGCAAAGAAAGTGCCATgtgtggtta-aaaaaataaaaagaaagaaatcgtACAAATCTctaaatcttt-gaaatttttaaaaataggccaTTTTTAGAAGGCTTATAACAATAAATTTTCTGGGCCTAAACCAATGACCCACTTACTTTGAACAAAAATGTGACAGTACAaatttcagtacataatgattacttaGAGACAGTCCT--TTAACA---TGTTTATTAAATTATAACTTATAATAAAGTATA-TTGGACTCTAAACAGATTATCAACAATATATTATGATAGTAAATTATGGAC--------------AATAAAATAGGGTCCCTGAAAATTATGTTCATAATTTCAGCAGTTGATTCTGctgatttttttagtttctgGGTTTGTTTGCATTAC--TCTTGAAAataacatacttttatatttccCTA-CTAGTTTAACAATTCCTTATAAT

a score=10683
s chr3           154226054 1300 + 160039680 GCAATGAAATGGACTTTCATGTAACTTTTGACCTAGGACTAG---------------CTGATAAAAATGTATTTATTAAAGTAAGGCAGGAAATAATGTGCATATTTCTGTGCCAGGATGCAGTAGGCACATCTCAGGATGAGTAAAC---------------CCAAGTCAGGGCCACGCTCTGGTC--AGTGTAGCCACCGGGGTGATTGTATTTG----TGCTGTGATAGCTTTGCAGCTGACCCTGGATTCATAATACGTAGGAGAGATTCCTCATAACTAGGCGCAGA-GCCTTGTGTTGAGAGGGCGTTGTCATACCTGGGATAGTGAGGAATCCTGACTTTTATGCTTTATCTACTCCCAGTGGGAAGGACTGTGGGAGAAACACTGATAGTTTCCTGAAATTACAAACC---AGATTTAACCACAGCTTCAGAGGGCACAGAAATGTAGCTACGTGTAACTGTGTAACTTTCTCTGCA---CAG----GGGAAATTGCTCACTACGTTTGGCTTCAAGGCCTGTTAGCTGG----TCCACTAGAAAGCAGGAATTTGGTTGGTTGTGGCTCCACCTTCTGGGTACTGCAAGAACTTCAGCTAACAAAGATTGCTGGGAGGGTTTTCAACAGAGATTGTGCACAGATCCCTGACTGGGAAAGAAAACAACTTTCAGGTCTCCATAGAACTGTTCACAAAATGACGACTGTCCCACAAATCTGTTCGAATACGTGACCAACCCCAATCCTCCTATTCGATTTAATTTTTAAATTTTGCA-TGAATTTGGACATAGATC-------------CTGTGTCTCTA------GAAGGCATCTGGTA-------GACCAAATTTTGCCCCaatttttaaaatttaaaataaCTATATGTACT---TGAAAGCAAATT--ACATGGTAATGAAGAACCTGTAACAAAAGGAGTG------------GCCACCCACCTTGA-CATTTTGCCCATAATGTATTCCACAATGTATACTCTTTCCTGTCTCA-GGTTTAGT---TCCGGCAATTTAATAAAAGCGTCTTTTGGTGGTGTTCTTATTCTATTAG-------TTGATACTTTGTTACCTTTAGGTGGTATCCATTGATAACCTGCCCTGGAAAAC-------CAACT--------TTGTTCCTCTTTTT-ATCCACACGCCC---------ACGTCTGAGCTTAGATGGCTTTCTGGCCCCTTTCAGTAGGATATTGATAATGTCCCTCTACTTCTTG-TCCT----AACTTGA-CAGTGTCTGGGATCCTCTTTGTGCAAGAGAGTGATATCCCCCCGCCCCCACCATCTTCCCTCTGGTTTTCCTTTTCTGTTCCACTATGCAGTTTCTATATTTACTTTCTCCTTTGCGCGGTCCACTTTGTCACCATGCACACTTAGTGTT
s HiC_scaffold_1 141216506 1315 + 233722169 GCAATGGAATTGGTTTT------ATGTTTAACCTAGGCTTAAAagtgttgaacagaactgatagaaaaaaatt-attaa-gtagTGTAAGTAAC--TGTGTGTGCCCCAGtgccaaaaggaaattcatatatATC-TGATACATAAACAGTTTAGGCTTATTCCCAACCCAGGGGGACATGCTTATTCAACTGTAACCATTAGAATATTTGTACTTGGTATTGGCGTGATGGGGTCAT-GCCCATCCTTTATCTCCCATCTCTGGAAGAGTTTCCCTATAACTGAACTTGAATGCTGTATTTAGAAAGGGTACAATAATATTTAGAACAT---AGAATTTGACCTTTTATGCTTCATTTATGGTGAGCTAAAGGGACTCCCAGTGCTTCACTGGGAGTTTTCCAGCATGTCAAGAAGAGAGAAGAATCTGAGACTTCAGAGGA---AAAAATCGTGCT---TGTGGTTGT--AACTTTCTCTGCCTTTCAGTTTCAGGGAAGTCCTCATGACATTTGGGTTATAGACTTTTTCTCTGAGAGTTGCACTAGACAGCGAAAACCTGGTTGGTTTTGATGCCACCTTCTGGCTACTACAAAAACTTCAGCTTACGAAGG-AGCTGCTAAACTTTGAAACTGA-------TGCAGCTCCGTTACC---AAATGAGACAG-------------------------ACGAAAAGACCTGTGCCC------TTATTTTGAATAAGGAGACAAAAGAAA---------CGAAGAGGACATGTATGTTTTGTGCTCAGTTTGGAAGCTGAGTGACACAGTAACAGTTTTGTCTTCAGTTCACGGAAGAATCTCTCACAAAAATGGCAAGAGTGGCCCACAAATCT----ATTTAA-----------GCACTCCGTGGAACCAGTTTAAACACAGAATAAAAGGCTCCAGAATAAAAGCAATGTTCTCCCCCACCGCCACCATCCATGGTCTCTTCACTCACGATTTATTCCATAG---ATCACGTTTTCTCTCTCAGGGTTCAGTTCATCTGGCagt------------tatttttgtataattttaaatc-ataagGCTACTCTTTATGCTTTATTATCTTCAGATAGCATCCCCTGATAGCCAGCTTTGGAAAACAGTGATTTAACTCATTTACATAGTCTCTTTTCTTGATCCTCGTATTTAGCAGCCAAACTACTGCACATAGATTTCCTCATGGACACTTTAAATCATATACTATTA-----CTTCCACTGCTTGATCCTGCTAAGCTTGGTCAGTATCTTGACTCCTCTTTTTGTAGGGGGATATTATGCCTC--------CtacctttctttccatttttctttgctcttctatCTTTTACTCCCTGTGTTTA----TTCTTTGACAGGATCAAATGTGTAAACA-GTACATCTAATGCT

a score=21882
s chr3           154233233 1082 + 160039680 ACCAGTTTCTGAATCCTCTGAAGAGCTTAG-AGAAACAATGCTAATTCCCCATTCATACATCCAGACATGGACCCTGGAGTTGATAAGG----GGAGGAAGCAGGACCTA-------CAATCAACACC-CACATTTTCCTTTTGTTCCCTAAAATTGAATAGCTGCCT-----GAGTCCAGTG----TCATCTTGGGTTCTTTCCACATCACTGCAAAGTAGGCAGGGCTGGTGTGGTCTTCATCTCCCT------ATAATCGAAATGTAA---------------TATCAACTGACAGAATAACATTCCATTGAAAGCTCATGA-------------------CTGCCACTTATTATAATTTGCAATAGAAAGTGTA------------------------------------------------------------------------------ACTACTGTCTATTT-------------TTACACCACTA--------CCGTAATACATGCTT------------------------ATGTTAAA----GAAATCCTTAAATACAAAAATTAAATGAAGAAATATAATCCCCAAACTTAGATATAATGATTTCTTTTTGCATATAATTGAATACTTATTCCTATATGTATTTCTATACCAATACATAGTAAAATAGTATTTTAATTATCTTTTAAGTAAGCTCCTCTCtaaaataaatatattattaattttCCTT--CTATTAAACATGTGTGTCAACCTCATTT-CCAAGACAATACAATCATTTGCCTCGTG-----------------TTATACAATCTCTTGCTGGTGAACAATTT----ATTTCAACTTTTAATAATGACAAAACAGTTTTGATTGTTAGGCAA-TGTAAAGGCAGTGTGAGAATACGTTGCAC--------AGAAAATGGAGCTGACCTTTAAAGGCAACGAATTCAACATTTTTGTGGTTTGGTGTGC--------ATTCCTACCATCACTGAAAAGATTTATTTATGCTTTCTTTTTTAAAAACAGGAACAAGACAGTTTTGTTTTACTTTAACATCTTTAGATGTACCAGTCCTTCTATGATGCTCCGGCTACAGTGCTCTACCACACAGGTAAGG--CCGGCCGCCTTCATGCTGGTGTTAGCAGTCCCTAACGGGCTGGGTGAGAAGATTCAGAAATCCCATGTCGAGTC-----TGTGTGCAGTAAGAAAATGTAAGCATCATGTCATGTTCATTTACATTCAATCAAAGCTAA----AGATAAATTATGTCACAGTGACTAGGCAACTTCAGTGA
s HiC_scaffold_1 141220841 1285 + 233722169 ACCTATATCTAAATCCACCT-----CTTAGTGGGAACTATGCTAATTCCTTGGCTCTGTATCCAAACACGT------GAGTTCTCAAGGCCAAGGAGGAGAAAGGATCCAGAATTTTCAGTAAACACTTCAGATTTTATTTATGTGTCCTGAGGTTGGGCATTTACTTCTCGTGAGTCCACTACACATTGTCTTAGGTCCTCCCAATACCACTGTGAGGTAGACAGGGCTGGTATTGTCTTCATTTGCATGATGAGAAAACTAAAATGCAACCCCAAACAGTGGTTTGTCAAATAACAGAGTAGAAGTCTATGCAAAGCTAGTGGTTAATGATAGTCAGTTACTCTGCCATTAACTGTAATCTTCAGTAGagaaaataccaataaaattatgtatctcttttagatttttttgttttttgtttttttcatttttatcggtactggggatcgaactcacgactgcctacttgcaaggcaggcgcttatgccactgagctaaatccccagcccatacctCTTTACAGATTACCAAAGTATACAATGTTGAGTTGGGAAATCCATAGAGacacaaaa-aactaaacaaatataa-CCCAACATTCAAATATAATACTTTCTCTCTACATGTAGTTTATTACACCTTTTTATAT--AGTTATAATCAAGCATATCATAAAA---------------CTCTCTAGTAAATGGtttcttaaaattaatgtatggttaatttttcttatccattaaaCATATCCTGTGACATTATTTTCCATGGTAATATAATGTTCCAATTCATGAATGTGCAATTTTGTGTTTAACCAACCCCTTGCTGATGGACAATTTGATTAGTTGAATGTTTTACAATTATAAAAAGGTGCT--CTATTAGACAGCTGAAAGAGGAGTGTGAGAATCTGTTGTATCAGTCTAAGGAAAATTAAGCTAATTTTTAAaggtcataaaataaaaatatttgagatctGAAATATTACAGGATATTTCTGTGGTCACTAAAAAGATT-ATTTAC----TGTGTTTTCCAAACAGGAACAAgactactttgttttattttaacatgCTAAGATGCACCAGTCCCTCTGTGGTGATAAACCTACAGTGTCCTACCACTCAGGTAAGGAAAAAGATACCTCCCTGGAGGTAGTTGTAGGTCTGAATATTTGGGAATAAAGTATTCAGAAATTTGGT-TTGAGTCCTATGTGTGCGTGGTGGTAGCACACAAGTATTATCCCAGTTTTGCTTATATGCAATCAAAACTAAGCTGAGattaattattttagaattgtTAAAGAAGCTTAGTGA

a score=23465
s chr3           154234657 1430 + 160039680 agagaatatctatggaatgaacgaGCCAGTAAATCAATGAACGGCCCTCTTCCCATCCT--------------TTCCACTACACAACATA-----------------------CAACAAAT--------TCATGCTTGGTAGTT-----TCATAGATGTTTTCCTAGATTATTTAGGACATATATGTATATGGTGTTACATAACAAATGTGGTATTTTAATCTTCAGTACAACTCACTCTCCCAGGTCCACAATCCTTATTTATA--ATAGTGTTGAGTC-ACCTGAA-CTGACATG-GTAACAATGA----AGAATGGTGTTGAAAGTGTCCTGTGAAATCCATAG-GAATCACAGCTCAG-CAGAATATGTTGCAGCTGCA---------GCTGTGCACTCTGCATTGGTTGGCCCTGCAATAGTGTATCCATAGATCAGAGCTATCTATATTCCATGCATAATATTTTTCTCAATTGGCAGTATGGTCC------------TAAGCCCTTGAATAATGGGCCAGCATCAGTTTGGATACCCAGCTTCAGTGTGACCTTC----TTGACTAATTATAGCTTGATTGCTTCTAATCAGCATCTCATTTGAAGTGAACAACTTGGTCTGATAGAGGAAAAGAAGAAATATCAGTTGCTATGGTTTTGTGGTTGTTGTTTTA--AACTCATTTGTCTTTTAATTGAAGTTCATTATGACTCTCTTTGACAAACTACTTTTTTTCCATTTAATTGCTTTCTTCTTCGTGTTGCAAATGCACCA-GTTTGTATGTGTAGTATACATT------------------GTGTGTGTATTTGTAAGTGTAGA-------ATTGTCAGGGTCT-CAGAGG-----------------------------------CAGCA--------------------------------------------------------------------------------------------------------------------------TCTTGCATT----ATATGAATCTCAAGAGAATATTGACTCTTTGAGTTTCCTCTTTAATAAACTCAGCAAAATGT---ATCCGTCTTCTATCTTCCTCCACATTATGAACCAAGAGTCAAAGCTATCATGTCACTGAGGAATCTACTAACCTGTTCATGACTTATTCACCCTAGCTCCAATCAGAGTGAACTTTTTCCATTCACACTGATAATAACTTTGACCTTCTTATAAAACATGTGGACGTGTTAGATGCTGTCAGTGTCTCTAT------------ATGCAGCTTTAAGACATTCCAAGCTTCTGCTAGAG-GTATATGAGTGTGTGTGTGTGTGTgagagagagagagagagagagagagagagagagagagacagacagacagacagacagacagacagacagagaagtgcatatgtatatgagtagGTGTAAAGGAGAATCTTGTGGAAGAGTGGATGCAAGATGGCTTGTCTTATGCTGTCAAACTTTTAGAAGGCATTGGACTCCTGTGGCTATCACACAACATTACTGTGAGACATGAGGTATGCATTTAGTT--CTCCT-ACTGAGATG----TATGGCCAACACCAAGTGCCCTTGTAGACAGTAGAAACAAG--TCAAAAGGTGTGAAAG------CAGCTCACTTAGCAGCCGTGCTTTTGCC-------------GAATTGCCAGTAAGaacaatcacca
s HiC_scaffold_1 141225371 1581 + 233722169 aaaaaaaaaatatggacttAATGCATTaataaatgagtgaattaatATTTTCCTACTCTCCATTAAGGAATTTTTCCACCATATTACACAAATCTGTCATTTCTATGATGAGACAAAAAGTCTTGCACATGATGCTTATTTGTTGTGTTTCATAAGTGATTTAGTAGATCATCTT-----------------------CATAGCAAAAATAGTGTTTTAATCTTCAATGCAAATCGCTCTCCCAGACACTGAATCTTAATTTATATTAGAGTGTTAAATCCATCTGAATCTAAGATGTAAAACAGTGATTAAAAAACTATATTCAGTGTGCCCTTTGTGATACACAGAGAATCAGAATTGAGTCAGGATATATTTTAGTTGCATAAAATTCAGCTTTGCATT------TAGTCTGCCATGCAATGTTGTATGCAt------------------------gcattacatttttattaaccaCCAGCATAGTCCAGACATGTGTCATGAGCATTTAAAGGACAGACTGTGATCAATTAAGGTACTCAACCTCAATGTAACCTTCATTTTTGGCTAATTATATGTTGATTGCTACTAATCAGCATACTATTTGAAGTGAACAAATTGGTCTGATAGAGGCAAAGAGTATAGAGctgttgctgtattttt-----------tttagcAACTCATTTGTGTCTGGAATGAAATTTGATATGAGTCTCTATAACAAACCACTTTTTGCCACTTTAATTG------------TGTTGCACACAGAGCACTTTTATATATGTAATAAGaagtctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaacccAAAGACTTTCATGGTCCACAGagatgaaaggagaaagaagggatgGAAGGAATGGAGGACAGCAAAAGAGActtaagatgtgttgtgtgcatgtaccagctccccacaatcaATGGAATCcttatgtactgcaagcatgtactagtagaaaatgagagaaatttccTTGGCCCCAAGGATGTAAGTTCTTACATTCCTGACAAAAAT---GAGAAAGCATTGATTCTTTCAGTAATGACTTTTATAAATCCACTGAAACAGCCAATAGGAAAACTATCTTTCACCACCTTCTAAGTAAATAATCAGAGCTTAAATGTTCTACATATATCTCCCAACATGCTAATGATTTATTCAGCTTACTTCCAATCAGAGTGAACTTGTGACATTTTCACTGGTAATAAACCTAACTTCCTTCCAAAATATGTGAGCATGTTGAATGCTGTGAATGTCCCTATGTAGTTTTTTAGATTGGACCTTGAGACTGCCAATATTTCCTCTAGAGTGCATGAgattgtacatgtgtgtgtgactgaaaaatgggaaaa-----------------------------------------atgcagGTGGAGGTGTGAATGTG---GTGAGTGGTTGT--------TTGTTGTGTCAAAACACCTACAAAATA--------------------------------ATTGGATTTTTGCTGCCATCAGTGAGGGTAAGTGTGAGATTTGAGGCCTCCATTTAGTCAGCACCTGACTGACCTAGCATTGAGGTCAACG-CAAGGGTCC-TGTGTACTGCAGAAACATGACCCAAAGGATGGAGAAGAGATGTCAGCTC----AGCAGCAGTGGTTTTGCCTACCACCTATGGGGCTCAGGCAGTAAGAATGATTACCA

a score=31080
s chr3           154238839 4459 + 160039680 [encoded data, 5057 characters]
s HiC_scaffold_1 141227855 4246 + 233722169 [encoded data, 5057 characters]

a score=39649
s chr3           154247269 2153 + 160039680 TTCTATTACTTCCAAACAACTATTTCCTGGCATGTCTCCCT-----TACTCACCAGA----ATACCACAGTTTCACCATGGACTTATTTTATAGTTTATCACCAAGTGGAAGGGTATAAAGGAAGAA----GGACA------ATGTGGAAAGTGTTCCTACAGGGAAAGTTGTAAACTGGGAACTGCTCACTTCCTTGAGCAGAGA---ACAATACTCTGGATTCTGGAGACATACAGGATGTCTCGAATGGAAAGTCCTGACTGGGCCTCAGCTTTCCTCTTTCATATGAAATCCTTAATGAAAACCATTGTTTGTACTTCTTAGAGCCGTA-----TTTGTACAGACAGTAAAATGGAATGTTCTA-GAGTGATTTCCAACAGAAATAGCTCCCATCTGGATGTTCATGTTGTGTTGCATACAGCACACCTGACTC---TGTTTATTGTGGGTTTTATCTCTAGCGGCCTGACTGTTGCCATGGCACTGAGTTGGACTTTTTTAATACTCCTGAGGTTCACAGCTGGGTTCCTCTTCTGGTTCTTCATATTTGGTGTGCTCGGAATTATAGGATACGGTAGGTAACATGCCTCTTAAAGTTGCTGAATATCAGAATAA------ATTTTCCTAGTCGTTAGCAGTTACTGGAAAGCATTTACTTGCCTTAGACTCAATTAGTT-------TGCATCATAAC-TTCACAAAATGTATTTAATTTCACACATATTTTCTTCATAACTCTTT-TTGTCATTGTCTTGAAAACAACTCCATAAGAAAAAGCTCCTCCTTTCCTTAGCAGTCTTTGGACTCAGGTCTTACAGGAATTG-GGAGGGGCAGAAAAGGCCATTTTAGATGAATGAAAACATTTCAAACAGTTAACCTT----CCCCCATAACTGATCTATTGACAGCACCCAGGTCTGCACAGCTGCA-TAGCTTGATCTATTTTT---TATCAGCTGTGGCAGTACTTTTAAT-------------CAGGACTTCATAGTAGTCACTCCCCATATTGAGGCATGGCCCTCT--AGGCAAGCACACTAAATCATACTCACTGGATGAAGGATTCAATTC---------AATTCAATC----------TCCCCAGAGCTGTGCATCTCAGGCCTGATGCGAACAC-TAAAAAAAGAAATTCAAGTG-CTCGCTCTGGGTGGTATAACA-TTATAGACATCTGCGTTTGGCCTTCTACGCAGCCCATGGGACGATATAAA-------GCAATTTATATTC-AAAGAATGATTTCCCCCACACCAGGATTCAGATTAGCAACACAGTATTTATAATAGTAGACACCAAAAATAACCACCTCTTATTTCTGTTCCTT---GAAGAGGTTTACATATTTTATAGCAAGGGTGTG--GGCAGGTTCACGTTCAGTACCTAGCCTCGACTATAGCCCGGCTTTGTACTGTATAACCGAGTAACTATGGAAAACTTTCTGAA-GATGACAAGACCTAGCTCCTATATCTGTATCATCACTCCAATGATGGACTCTCCATCTCAGAAGATAGAAAGGATTAAAT-----AATG------------ATCACAGGCTGCC-------------AGAAGAGTCCAGACATGGTAAACGGTCAGTACTGGTTACTG---------TCATTACCCTCAAAGACCTTCTAGTAAACAGTG-AGGCTCTCCCTGGGCATCTCTATTTGCTCC-ACTGTG-----------------CCTCTGTGCTTCCTCAT--GCACAGCCA---GACAAAGCCAGGGCCTTACTGATGGAGGAGCCTGG----GAGCTGCTATGCC---------------------------CTCGTCTT------CTCATGTGCTCCTACCTGGA--------------------TGTGCCCCTGGAGACTCTAGATGTGTGCTCCAGTCCCTCTTCGGTTGTCATCAAGGCAGAAATGGAGTCAAGTCCACCATTGATGTCACTGACTTGATTCGAGCAGCAGGAG---TCTGGGATTG--TGCAC-CAACCTTGACACTGTGA------------ATGGGCAATAGATGCAAAGTGCAAACAAAACCACTGGGCTCAGCTACCTATTGACTCCCTAGGCAGTGCTAGCCCAACA--ACTC-ATGGCATGGCAATTAAGCTTGAAAGCTTGAAATATTCACAGAGAGGAAATGTCCAATTAGGTTGTGAACAGTAAGTAAGTGAAACTGGATGTGACTGGCCTCTGTGACTGTCTTGGACAACTGGTTATCTAC-TATCATAGAAAACTAAGCAATCTTAGTGATAGTACCAAATTTTACTAAAGCATAAAAACAATGTGGATGTGTCATAGCAAATAGATTAAAAAGTTAAACTGT
s HiC_scaffold_1 141236056 2293 + 233722169 TTCTTTTTGCTTCAAAT--CTATTCCCTTCTAGGCTACCGTGCAGCTAGTCACCAGATAGAACAGCACAAGTTCATCCCGtgtatatttcataatttatcaGCTAGTGTGTAGGTGTGAGGGAGAAAAATTGGACATGACGACTATGGTAGAGAGGTCAGCATGGTA-GTTGGA-----GGAACCG-TATTTCCCTTGGACAGTGATGGATAGTGCACTG----CTCGGCACACA-AAAATGTCAT------------CTGCTAAAACCTC-----TACTCTTTTGTATGAAGGTCTTCATAAAAGTTATTGTGtatatttcttaatattataGATCCTTTAGCCA---AGGAAAGTAAAATACTCTAAGCAtcattttgaagagaaaacagGCTTGTTTTGCTGTTCACGCTATGGCATGTTTAGCTCACCTGACCCCTGTGTGTGTTGTGGATTTTTCCTTTAGTGGCCTGACGATTGCCATGATCCTTAGCTGGATATTTTTGGTGCTGCTGAGGTTCATAGTTGGATTCCTCTTCTGGTTCTTCGTGTTGGGTGTGCTTCACATTATAGCATATGGTAGGTATCAC-CCgccaaaaatttccaaatatcagAATAACCCTTTGTTTTTCCACCTGGTACCAATTCCCGGAAAACATTTACTTGCTTTggatttaattattttctccCCTAAATCATtacatttacaaaat-tatttcatttgtcaTGCATTGTTCCTGTAACTTTTTGCTGTGTTACTTAAGGAGATGGTGCTGTCAGGATa--ttattcttttccttcctaaGCTTTGGTCTCACTCCCCATGGTTATTACAAAGTAGTAAACAAATTTCTTTTAGATGAGTAAAAAA----CAGACAactcctttttaaacttttatatctGAT-------CAGAGACCATTTCTGCGTGTTTATATTAACAGGATCTGTTTTTCCCCATCAGCT----TAGTACTTTTAATGCTGGTACTGTCACGTATTTTAATAATTGATACT--TCATAATGAGGCACCACCCTCTAGAGGCAAGTATTCTGAATTACAATTATTGGCAGAAGAGTTTTATTTCAAGGTTGAAATGCAACCCTAACTGCAGCCTGCTAAGCTGTAGGGATCAGCTACAACGTGAACTCTTAAATGAAGGAATTAAAGCGTCTCCCATAGGAAGATATGCTATTTATGGCAGTTTTCTTTCAGtcttcaaaaaacacaaaaagaatgcAGAAATGTTTGTGAGGATTCTACTCAAAAGAATGATTT-CCCCATAACACACTTTGAATTGACAACATGAT-TTTATGATATTAGACACCAAAAATAACAATCTCATTTTCCTGTCGCTCAGAGGAGAGCTTTGTGTATCTTAGCATCTGAATGCAATGGGAGCTCCAGGCTCCACAGTTAGCCTGGGCTCTAATGCAGTTCCGCCGTGAAGAACTGGGTGGCTACAGAAAAGTTTCCTAATGATTATAAGACATGA---------------CATCAGCACAATAACAGTGTCTCCATCTCAGAAGATTGgaaggaataaaggagaaaatgaaacactTGTACATCTAAGAGTGCTTGGAACACAGTAAAAAAGAAT-CAGTTGAAAAAAAAGGTTA-----GGTTACTGTTGTCTTCCTCATTGTCCTTGAGGAAATTCCAGGAAGCAGTTCAGGTTCTGCCT-----TCCTTTTCTGCCCCTGCTGGGCAGCTACTTCTGAATCCCACCTGGGTTTCCTCATAAGCACAGCCAGGTGACAGAGCAAAAG---------TGGGTCAGTCTGGTAGAGAACTGCTGTCCCTAAACCAACCAGAAACTCCACAGAAAGCtttcctttaaaagtttttgtgttCCTACTTGGAACGCTAAGTAACCCCTACCCTTTACCCCTGGACAGTCAAGGTATGTGATTCATTCACTCTTTAATTGTCATCTAGAAGGAAAGGGCAT--AGTCTGCTATTGacttcactgatttattttaagaAGCAGAAGAAATCTAAGCTTGGCTGTGTGCAGTTTAGATAATGGGAAAAGTGAGAAAGATGATCAATTTATAGAAAGTGCACATAAAACAATCAATTTTAGCTCCCTGTTGATTCCATAGCTAGTGCCAACCCAGCACTACCCAATCGTGTAGGAATTAAGCTTG-ATGCT-------TTTATGGTGGCAAAATGTCCAGTCAGGTTGggaaatataagtaaataagatTGAATGCAGCCAATCTCTGCATGTATCTTGGACAACTGATTTTCTGTGTATAACAAAGAGCCAGTGATTTCCTAGGGCAAT-CCA---TTTACTAGGAGGTTAGAG-AATGTGGCTATGTCACACTATGCAGA-AAAAAGGGCAGGCTGT

a score=20650
s chr3           154249968 1451 + 160039680 AGTGGTAGAGAGGGCCATGTGCATAACCAGATGTGTTTCCCAATGCCTTGGATAGAC--------AGAGCAAAGGGAAGAGATTCTACACAGTAAATG---AGAC----TGAGGAAGAAGAGCAAGCGAAGAAGATGATTTGGGAAA--------TAGTGGAGAAGTGAACTTA--GGTCCTATAAGATAATAAC-ATTGCCCAATTTTTAAGATAAAAC--ACATAGCTAAGATATTGGACAAAAA-------GAGCATGGTTGCTGAGCAACCAAAAGGCCCTTG-AGTTTTCTCGTTAAATATC--ACTCTGAGCCTGACTACCCAGCACAGGGTAAATTTCCAAGAGAGATTATAAAA--------------------------------ACGGAGTG-------------------------------------------------------GCTGGCAGTGAAGCAC---AAGGAAAAGAACACGTGTAAATAAAAACAGA------------------------------------------acgaaaattgtcaagccagattaaaatgtgtacatgggagttagaactgtatgctatttacaaacttcacagaatgtgcaaggaaacacaacagttaaaagcgaaacaatgattttaaaa-ctagcagttatgaaaagagatctatagtagctataataatatcagagaaaatggaatttgaaataaaaactattag-----gagaAGGACCAGCTCAATTCAAAACAAAACCAATCCTACTTGAAT--GCATCTGTTAATATACTCAAGATCTGTCTTC---CTTATACAA-------GATAAATCAA--------TAAATAATAAAGTGGTACTGGGTCTAAAT------TAGAGGATATCAGTACATTTTCTT----GGGGAGAGATGTACTATAGCATATTAAAATAGTCCTC-TTGGTGGATGTTAAGGTTGCGATAAG-------CACCCTGAAAGCCAAATA-------------------AATCCAGAGAGCATTCGTCAGTCAGAGTAGCCTAGTAACGCTATTGTAGACAAACATGATTCTAACTCTGT--------------------AGGCACAGCCATGTCAGGCACTTTTATGTAGGCCTGCTTGAAAAGCATGTAGCTTCTACTTGAGAAAATAACATTGTATATTGGTCT--TTCCTCTTCCTTTCAAGGAATATGGTACTGTTTTCTGGAGTACAGCAGCATTCAGCAGAGGCCACAGTCAACGTTCTGGATGTATGGCTTCGGGATTCAGAGGAGAGTAAACATGTTCTTTCACTTGAAGGAGACCTGGTTTTCAATGAGTGAGTAGG-TTTAAGAGCCACTTTTGTTAAAATGATGACAATGGGGAACCTTGTTCGTCCAAGAGGAAGCTCGAATTTGATGCGTCCTGGGATCCCTCAGCGATGGCGTAAATGACTTTGAGCTTTATTACCTATT-GGTTTATTTGT--CTTGTGGAAGGACAATTGA---TCTGCAGAGTATGTTAATAGATGCATTCAAGTATAGAACTTGTTTTGTTTTTAGTGAACGGGAAAGTTGCTATGATTGTATCGTGTCATCTAAGGGAGCA---------------CTGTTAGAAGAATCCTAGGCCAGTTGCCATTAATTTAAAATGGTTTGATTGTGGGGATTTATGGGTGCCAATCT
s HiC_scaffold_1 141241240 1618 + 233722169 AGTGATGGAAAGGAAGATGGTTGGGAACACATTTATTTCCTCCTGGGTGGGATGGAGTTGTGAAGAGACTGAGAGAAAGGGAAACTGGTCCATAAAAGCACAGATGTTATGAGACAGGATAATGGGCGAGGAAAAGGAGCCAGTAAACGTGTCAGTAATGTGAAACCAACATTACCGAAATGAGATGATGATAACGAGTATCCAATTTTTGGATTAAAATTTATGTGACTAACATATTGAACAATAACCATAATGAG-ATGACTGTTGAG-----AAaaaattcttatatttctttcttaaaatattcaactttaaacttcattatt-aGCGTACAGCAGATTttcaaaagtaattataaaagaCTAGACAGCgccaagcaaaagagaaaaaaaatggaatgtaAATAACCAAAATATGATGAGTCTGTAAAAGTCAAGAACCAGAAGCAAATTCATGTAGACAGTGGAATAAGGAAGGCAAAAGAAGAGAGATAAATACAAACATACagtacattaaatgtaaatgtattacatttacCAATTAGAATACAGAAATGGTCAGGTCAGATTAAGATATGCACATGCAAATTGGAGCTGTATGCTATGCACAATGGTTATACAACCCAAAAGAAAGGATAACATTTAAAAGTGAAAGGATGATTTAAAAAACTAACATTTATTAAACAAGGT-TGTAGAAGCCCTAATAAC--CAGACACAatagattttaaagcaaaaagtATTAGCAATAGAAAAGATTCAGTTCAGT--AAAACCATACCAATCATAAAAGGATATGCACCTGTTAAAAT----------TGCCTTTACATTCACAGAATTACAGGGATAAATCAGCAAGCCAGTAAATAATAAATTGGTTCTGAGTAAGACTCTCCCATAGGGGAGATTTTAACACTTTTTTCTACTGAACAAATTACACCATAATTGATTTAACCAGTCCCCACTCATGGTAATTAAGGTTGTTGCTAGTCAAGGGCACACTGACAATAAGATATTGCCAGTCATATAGATTAAATACCAACAGCTTATATTAAACGCAGTAGCACATTTAGGCTGTTA-ATGCAAATAGGATAATGACTATGTTAATAGGAATCTTCCCTCGAGGAAATGACCATACCGATCTGTTTCTTATATGTATGTTTAATAAGAAAGTAGCTTCTAtctcagaaaa--atgttttatattaatctagttttctttcttttcaaggaaTATTTTACTGTTACCAGCAATACAATAAACTTCAGAAAAAACCAGAATCTTTGATAACTCTTTATAACATTGGGATTCAGACTAATATGACCATGTACTTTCAGTTGAAACAGACATGGTTCGTATTAAGTAAGTagacttttaaaatgaattttgttaAAATTGTAATAATGGGAAACTT--TTTATCTAAGGGAAACTTTGGGT-------------GGA---------------------------------TATAACCCACTAAATACATTCATCACTAATGTAACTACAAGTAAATGTCTGTAAACTATAGTAAATGAAAAATCCAC------------------------TGA---GGAGAATT----------TACTGTGTAATCTAAggaaacatctttaaaaacatcttttttaaaaacatctcaaGCCTTTTGCCTTTAACTTAAAGTGGTTTGATGATGGACATTTGTAGACATTAATCT

a score=24065
s chr3           154254653 1412 + 160039680 AAGTCACCCCGAACAAGTCCTTTCTGTTTCTCAGACCACAGT-GCCAGCTAAGATAGACAATGCATAGTCTGTGTAGACAAACATTTGAACACATAGATAGACTCTGAATGGTCTGTGTGCACACATTTCAACATGTATATGTTTGCAGAATGTAAGAAATGAAGTACTATATGGA-GTTGGCTGTACTGTAGGTTACATTTTTCTCAG-GTGGCTCACGTGTTAATATTACTGA----------TTGAGAGG-----AATCACCGTAATTCCAGAATATCAACTGTGTGCTACCCATTGTGTGTGCAGGAT-CTGCTTTTCTAACGGACAAAGTGCTGGTGCTTGAGGGCCT-GGCTATACATTCTGTATGTAAAACACACTATTCAGACACACTTAATACCCAGGGCCACTCTC---ACTCTAAAACGTTATGAAATAAACCGT----CTTTTCTAAAATTCA------------ATAATACCTATAGTTTGAAAACTATTCCAATAGGTCACTTAAGAGTAACCTGTGCAGGCAGTGTTTGAATGAAGAGCAGAGAAAACACCCCTGGGAAGCCAA---CAGACCCTCCTCATGGAACAGTGGAAAC--AGTTGTTAACTACCAAGAACCAAATGATTTTTAATTGTATTTAAGGACTATTTTAACAAAATTGCCATATTATTA---TAATAAGAGTGCCAC----------TGGTTTAAACAGCTGACAAGCTGTTGGTTAAACCCCCCCCCCACACACACACCTTAGAATAAACGAGGCCCTATCATTATCCCCTGAAA-CTACTGATTTTCTGGATTTATTTCTTAAATAGTATGTTATTGCATAGTTTACTATAACTCAACTCACGCCTTACAACCTTAA--------------------------GTGTCTGTGTATGTGTTTA---AAGATTAAGGACCAGTATCACTGTGACGGGCTAATAGATT----AGGGGG---GCGTG--------------TAAGATCTGGAATAAGTGG--GTCAGAGTTCAGAGTAAGCTTTTGGACTCTTGGCAG---CTTAAATTCAGAGCGCATAGGA--AAGGACAGAGGCACTGTAC--AGTG---AGGCAAGCCAGCATGGATACATGTGCTGGTGCATTTGATGTGCGGATGCCCTTAGTATTTCTCCTTGGCAATATCAAACGAGTGTGTGTTTGATCTGGAGACAC-TGATGAAGCAACCACTTAAGAGCTGCCAGTGACAGCT---------AGCTAGGGCCACTTTACAAACTGTCCCTTGGGGAAATGTCCTAGAGGGGA------AAGAAAAAGGAGGAAAGTGTCACTTCAAAGGGTTTGTAAAAAGTAAAAGTGGAAGAAGTAATCACATAACACAAGCCTCTCCGCCCCAGGAGGAGTGGGTGTGGGATGCCCAAGGACAGAGGGGGAAAACCTAGCTGGTCCTTTGCTAAGACAGAG----TGAACCACACTGTGGAAAAGTAGCCCCACACC-CAGTGTCTGCAGTGGAGGC---TGGTCCTATGTTTTG
s HiC_scaffold_1 141247926 1459 + 233722169 AGGTCATCACTACCAAGTCCTTTAATATTCTCAGGCCTCAGTTGTCA--TATGGTAAAAACTGTCAGGTCTGTGTAATCGCATTTTAGAACACTAAG----------------TTGTAGatacaaa----------------------------agtaaacaaaattctCTATAAAAGTTAGCTATGTTATAGGTTATATGATTTCCAGAGTGGGTTGCATGTGAATATTAATGACAGAACTATTTTGTAAAGCTTTAAATTATCATAATTCTATGAAGTCAGTTATATGCTATT-ATCATTTCTACAAGAGGAAAATTTTCTAATAG-CATGGTTC--ATTCTTGGAGTACTAGGCTATACATTTTGTATATAAAGCTCacaattcagaaacatttagtacCTAcaaccattttttttattttaaaatgttatgaaataaACAGTAAGTCTTTCCTAAGATTCATATTGAGAGGCAAGAACACCTATAATTTCCAAATTATTACAAAAGGTCACATGATACCAAA------AGGTATCATTCgtggaagaaacaaagaacacaTTCCTGTAAAGCCAAACCCACACTTTCTACACAGAATGATGGAAACTAAGTAGTTAAGGGCAAagcatcaaattatttttaatcatccTGAAGGGCTATTTTAACAAAATTGCTATATTATTAGTGTAATAATAGTACCACCTGAAGCCAGTGGTTGAAACAGTTAACAAGCAGTTTGTTAAACTCTCTCTTTTCCCACA---------ATAACTGTTACCCTATCATTATCCACTGAAAACTACTGATTGTCTGGGTTTACTTCCTGACTAGTGTGTTTTTGTGCAGTTCACTGTAACTTGCTCCACTTGTCCTGACCCCAATTGGGTGTGTACATGTGAAtacgtatgtgtgtgtgcacgtgtgtatgtgtgataCACAGCCAATACAAATGGGAGGGGCCAATAGTTTTTTCAGGAGATACAAGTGGTTAAAGACCAAGATAAAGGCTGGAATAAATAGAtataagaacataaaataaactaaaaaatactcaaaagacACTTAACATCAGTAAACGGAGGATTAATGAGACAAACAAGGtatcaaatgcaaaagaaatctGTCATGTCCGAATAT-CTGGAATGATAGA-----AGAGTTTCCTAGTAATTTCCAATAGTTATATCAAATATTGTTGTGCTTAATTCACTGTCATATGCTGAAATagtcatttaaaataagaaattagaaactcaGCAACTGagctggtgac-cattataaa---tctTTTGAGGAAATATGAAAGGAATGATTACCTAGGAGAAAAAGATAAGGAGTCACTTAAAGAGGT------GAGGAGATGGTGGCA-AAATGATTAC--------TGCTTCCCCAC----AAATTAGTGAGTGAAAGTTACAAATAGGCAGATAAGAAGGACTT-TTTAATGCTTCGTTTAAAATAAGGAGTTAAGTTGCATCATGTAAAAGTCAATTCTCATCACTCTGTCTGCACCAGAGACCAATGgac--atgttttg

a score=8384
s chr3           154256483 145 + 160039680 TTTGCTTCATTTCAGAGCCATTAGCTACCTTCCCAGTGCGTTAATCTACCCAGTTTTAACCTTCATCTTGCTATCAATCTGCATTTCCTACTGGGCTGTGACAGCCGTGTATCCTTTGTCAATGGACTCCTCTTATTATCATTTT
s HiC_scaffold_1 141249381 145 + 233722169 tttgttttatttcagagcCATTGGATACATCCCAAGTACGTTAGTTTATCCagctttcactttcattttgctcttgatCTGCTTTTCTTACTGGGTTGTGACAGCAGTGTATCCTTTGGTAATTGACCTTTTTAAACCTTATTTT

a score=49574
s chr3           154257544 2667 + 160039680 CTCTTTATAGTTTTATATAACTCAGGGCCTGCTCAGTGCAGCTGGCCTA--------TGATATCAGTCTCCTAGGAAGGTAATTCTTAGAGAATGGGAAGAAAAGACTTTTAAAGCTCATTTCTCCACAGGCTGTGGATTATTTTTATCCTTTTCTTGTCTGTTTATTTTCAATTTAATGGTAAATAGTTTATCCTTAATCA--TTTGTTCAGTTTCTTGGCTACATCAGGGGTACCAATATTCAAAGTTATGGTCCCAGCGGGGCAATGTATATATGAAGATGAAACTTGTGACCCAGAGGTGAGTAATAGAATC-----------CTGGAATAGCTA------------GCTTATCATG----------------AAGCTGATACAGGG----------------GAA--------AGATGCAGAAAGAAAGGGGGTATTATATTATCA-GGAAGGCATTGAGAACAGCAAACAGGACAAAG--------------CTCACTTGTCTATAATACACC-TTAGACGATGGTATGCACTAATTAATGAAAGCACTAATG----TAAGAGTGTATTAGGACGAGAGATAGATGCACAGTGTGGTAAGAGAGATAGGTGCATGTGA-TGGAAACAAGCT-CTTCCCAGAGTGTATTAAAGAGTTCTGTAA--------ATTAACATATCAGAGAAGTGACAACCAAAAGTTATGGGGGGGAAAAAGACAGAATATGCAATTGGGGGCCACGAGCAAAGATAAGAACTGCATTTAATACCATATTTTCCTTTTTACTTCTGAGTACAGATTTTTCCTTATACTAACATTCCCAAAGACTGCCCCGGTGCATCGTGCAACTTTGCTTTCTATGGCGGAAGGAGCATGTACCACAATTACATCCTGACCTTCCAGGTCTACAACCTCTTTGCCTTCCTTTGGCTTATAAACTTTGTCATTGCGTTGGGTCAGTGTGCCCTGGCTGGTGCCTTTGCTTCCTATTACTGGGCCATGAAAAAACCCGACGACATCCCGCCATACCCACTCTTCACTGCGTTTGGGCGAGCAGTACGGTAAGCTCCGTGCTAACCCTCGCGCCCCTTTGCTCCCTTACAGTTTGTGCTCTGGTAGTCCTTCTTG--------AATTCAATTGACAAAATAC-TAATGAGTTGAAAATATGATTTGAGATTCTTGGATGCCCCTTGCCTTCTCTGGCT--ATAGCCACAGCCTTGCAATCCCTTGCCTGGGTCA---ATGTCCTAAAGCCCGTATTCCAAGAGACTGG--AGGAGATAGAGTTGGGTGACAAGGGAATT--AACTTATGTCCCTATTGATCAAGTCAA--GTCCTCTTTTAGGAGAACAGAATATGGGCTATATGGAAAGGTACT------TGGTTTCAAACCTTCTGTGGAGGCCTCTATCAATTCGAATAAGAGATTATAAAAAGCCCTTCCTGTCCGCTGATCCACTTTACCCGTGAAATTGTTCAAGGGGCACCCCATGCATGCAGA---ACAACACTTTATCTTCCATTCTGTTTTTTCTTCGCCTAGATACCACACGGGGTCTCTGGCCTTTGGATCTTTGATCCTTGCATCCGTTCAGATGTTTAAAGTGATCGTAGAATACCTGGACAGGAGACTCAAAAGTAAGTTTCCGGGATTGACCGTCGACCTCCG---TGGTGGTGAGAATGGGATGGGGTGGGCGCATGGAGACCTGTGGAC-TAATGTGGGT--CAGGATGGACAGGACTGGAGTTGTAGGGATTTGAATGTATTTTGAAACACAGCCCAGGAGGACTGGATAC-----------CAAGAGGAGGGTGGGAAAGGTGGGGAAAGGAGAACTATCTATCCGGTGTCCTCATGGTCGACCTTGT-------------GAAGGCAGGAGAAGCACATTTCAAGAAGGA-ATTAAGAGTTCTGCCTTAACATATTACTGCCGAGGAGTGTGGTAGAAACATCAGGTGTGCAGTTCCAGGTC-----------TCATCATGGTGA---------------GCCACAGACATCAATCTTCATACATGGCATACGCAGTCTACAGACACACGGGCTCTGCTCACACTGTGT-------GGTAATC-----------aaacggagca-caaagttggagggctcacatttcctgactgaatttcccgatttaagacaaaatgatagccaacaaaatagggggtggtttgggggggcgaatgaatgactagacctgaaatagtatgtggaccccacacacctcaactctaacatttaaaactgtctgatggggaaagactactcagcttaatggtgatgaaaaaattggaatgctcaaatgtaaatgcatgaaggtggacccataattacagtaaat----acaaaattaacccagaacacatcaaagatctaaacataaggggcaatgctataatatttctaggaaaaaaagacataagaaat---ctttacgccatcgggacttgatgacaatttcttgatttttcacaccaaaaaacacaaagaagggaaaagtaaattggacttcgtgaaaatgaaaaacacccgtacatcaaaggaacatcagagtaaagagacaacccgcgtagtggggggaaatagtggctgataatatgccagataacgctggactcgaatccagaacacacacggagctcctgccactcgataccaaacaggaaaagttcaaagatggcctgaggag------ttg---agaagagatctcatacagaccaggatggtcgacaagggc-tgggaagatg--cagtgtcattagacagggacacacaaaccagaaccacaccgtgatggcaccgcacacccattaggatggacattgaa
s HiC_scaffold_1 141249718 2680 + 233722169 CTCTTCAAAGTTCTGACTGTTTGGGGGACTACTCAGTACATCTGGCCAAAATTATCTTAATCTAGGCCTGACAGATGGCTGAATCATAAAATACAGTATTAGAAGATTTTTGAGGTTAATTTCTCCATGGACTTCAGAGTTAGTGCTTTATTGCCTTGTCTGTTTATTTTCAATCTACTGTAAAAT----TATCCTTAATAGAGCTTATTCAGTTCCTTGGCTACATCAGGAGTACCTGTCTACAAAGTTTCAGCCCCAGAGGGGCCATGTGTACATGAAAATGAAACCTGTAACCCCACGGTAAGTAAAAGAAGCTTTCTTGTTTGCTTACATAGATACAGAAATCTACCGCATGTCATGTGCGATTGTAGGAGTCATGGTGAGATAGAGTTCCTATCCACTGCAGGAAGGTTAACTAGGTACAGAAGGGGAGACCGAGTCAGGTGATAGCAGAGAGCACTGAAGTTAGTGGGCAGAACAGAGAGAAAGCATTATCTTTTGCTGGGACTTTTTACACTGTCAGAGGCTGGTATG-----GTTGATGAAAACactaataaatttgaaatttta------------atggcTGC-TAGTG-------------ATGAGCATATGACTGAAAGTGAGATATTTTCCAGGGTGTATTAAAGAATGATTTGGTATGAAGCGATAGTAGAT-AGAAGAGTAACTGTAAAAACTAA----GGAGGAAAAGGCAG------------TGAGTTATCAAC-----TTGAAATGGCCTGTAATATTCTCATGTCTATCTT--TTCTGACTACAGAATTTTAATGCAACCGATGTTCCCAAAGAATGCCCAGGGGCTCTCTGTAACTTCGCTTTCTATGGCGGAAAAAGTCTGTACCATCAGTACATATCTACTTTGCATTGGTACaatatatttgtctttctgtggctTGTAAACTTTGTCTTTGCATTGGGTCAGTGTACCCTTGCTGGTGCCTTTGCTAGTTACTACTGGGCCATGAAAAAACCTGATGACATCCCATCTCTTCCCCTTTTTACTTCATTTGGACAAGCAATACGGTAAGTTTCATGTTAAATTCTGCACTCATTTCCTCACCTATGTTTAGTGTGCTTGTAATTCAGTCTGGGCTGGCTAATTCAAGTGGCAAATTACATACAAGGTCTAAAATGTGATTCAAAACTCGT-AATATCCAATAGCTTATCTGGTTTCATAACCacagttttaaaatcttt---ctaaTCCAATCATTTACTAAAG----------ATGGGAGTGGGTATGATATCGAATGAAAGACTAAGGTAATTCAACCCTATATCTTCATTGATCAGGTCAAACATcctaatttatga------aatttatgatAAAGGATAAGACAGTTGTCTAtgatttaaaaccacttatggagaCTTTTACCAATTTGAATAAGATCTTTTGAA------------------GATCTTCTTTACCTG-AAAACTGTCCAACTAGAAACCTGTTaaataatagtgaaaatattttaactttgttCTCATTTTATCTTTGCCTAGATATCACACGGGATCCCTAGCATTTGGATCATTAATTATTGCAGTAGTTCATCTGTTTAAAATGATCCTAGAATACTTGGACAGACATCTTAAAAGTAAGGCTTCAGAATGTATCTCAGACTTTCAGACTTATATAGAGAATAGATTGGGATGGGGGGAGGGGGTTTGATGACCTTAAATTGGGTACAAGGGTGGTCAGCAAAGAAATGGTCAAGTCTGGGATATATTTTAAAGAGCAACCCAAAGAGACTTGTTAAATGATTGGCTGCCAGAGGAAGGGAAGAGCAGTGGTGAA--GGAAAGCATAAAGCTGGTGT----------GATCCTATATATGAAGATACAGAAGCCAGGAGAAACAAATGTCAGAAAGGAGGTTAAGATTTCTGTTCTACTGTGTTATTGTTGAGACGCACAGTAGAGATTCCCAGTAGGCAGCTCCATGTCTGGGGCTAAGGTCATATTGGTAAAATGTAAATGTGGGTGACATTGCTGTaagtcttttta-atgaaacatatAGT-TGTAAACACATGAACTCTGCTGATAATATGCCTTGAAAGATAGCCAAAACCATCTGAAAAGAAACATCAGAATTAGAGGATCAACACTTCCTACC-----TTTCAAATTTAACACAAAGCTGCGATAATCAAGAGTGATACTGGCATAGG-------ACAGACACATAGACCTAGAACAGAAT--------CTCAGAATAAACCCCTTACACATAAAACTACTCGATATGAAAAAGTCACTCTTTTtaa----gctggaaaaactggaat-----------------------------cataattatactaaattaaattaaagttaactcaaagtggatcaaagatggaaatataacaaataatactataa-aatgataaaagtataggaaatgaaaaataaattggaCAGGATC-AAACTTAAAAACA-----TTTAAGCATTAAATCAAAGgatgagagagagacaagaggaaggagga----ggggggGGGAGga------gtgaggaagaaaaagagaaggatggAGAG---ACCCATAtaatgggagaaaatact---tgaaaata------------------ttaagtgaaGAATTAATAAAGAACTTCTACAact-aacagcaaaagaaaaaaaggggggaaagatTTCAGTAGACAATTTTGCAAAGGTGATATATTATAAAGA----AATGGCCAATAAGgacatgaaaagatactcagtATCACTAGTCAT---CTgagaaatcaaaaccacaatggaatactacttcaCACTCATTAGAGTGGCTATAAAA

a score=7665
s chr3           154261274 122 + 160039680 CCTCCCACAGAGGCTCAGAACAGTGCTGCTCAGTTCCTGCACTGCTGCCTACAGTGCTGTTTCTGGTGTTTGGAAAAGATGGTGAAGTTTTTAAACAGAAATGCCTACATCATGGTAAGTAG
s HiC_scaffold_1 141253110 122 + 233722169 CTTCTCACAGATGCCCAGAGCCACACGTCTAAATTCCTGAAATACTGTCTGACGTGCTGTTTCTGGTGTTTGGAAAAAATGGTAAAGTTTTTAAACAGAAACGCCTATATTATGGTAAgtag

a score=12207
s chr3           154262406 887 + 160039680 TTACTTATCACCACAGTGGGGTGGGGGCCGGAAATGAGATTTGCATAGCCATGGATAGAAGATTC-------AATTAATTCACCTACCATTA-TAATGCA--GAGACTTTTAATTAATAAATCT-TCATAGTAGAAGGGGTTGGATTTCCTTAGGAGTAATTTGTGTGTGTTTGTG-TGTGTTAACAATAGTCAAACCATTTAATACC-TACTACAGCCTAA-TGTTTCAAAGATAGAATC---CCCTGAGAGTTGACCAAAAAAAAGTCTACCCTACATACAGCACTTGGCAATCCTCCTTAG--TGTCCATG-ACCCTACAA----------GTTCTGTGGGATCCACA----------------CCAGAGAGTTCCTGGGCATTCCACAAACCCAGATATTAGAAAACGT-----AAGGTTATTAGTATGGAAGACAGCAATGAACGTGTGCACTCCCTAATGCTGGATGGTGCTGGGTGGTG------TTAGTTTGTGCT--ACTAACAAGAGCTTCGCTCACTTTCCTTAGATTGCATTATATGGCAAAAACTTCTGTGAGTCAACAAGAGATGCTTTCTATCTGCTCATGAGAAACATTCTGAAGTGAGTAATCGGGCTGAAGGCAGCCATAGACAATCTGGTGAGAGGTGACATGAGATCTTTTGCTTGTAGCTATCTGGGATGTTTCTGGCCTTATCGTCCACAGGTGTTACCCGTTTTAGTTTGGTAGATTTTAGTC--------AACATTCATTGCTTTTCATATCTTAGAATTATGGCTCCCCTCATCTTCATAGGTGGCCACATATTTTATTGACTCTTTTGCTCAAGAAGTTCTCCAGACGACCTACATTAGCAGGTTCTTGGTAC---CCATTCCCTCCTCTCAAAATGACTGTGAAATTAGTGTGCAGAATCTGAGGACAC------------AAGGTTCAGGATGCCTTtgtc
s HiC_scaffold_1 141254137 915 + 233722169 TTGGTTATTGTCAGAGTGACACAGGGTCTGGAGATGTGCTTAGAATAGTCATGGT-----GATTCTAATACACATTAATTTTCTTCCTGTGAATACTGCATTGAGCCTTTTAATCAGTAAATCAAGTATAGGGGAAGGCTTTGGATTGCCTTCAGAGCAAATT-------TTAATGCTGAGACCACAATATTTAACCCATTGAACAATAGACTATAGCCAAAACATTTCAAAAGCAGAGTCAGTCTCTAGGATTTGA---AAGATAAGGCCAGCTTCTGTTGAAGGCTGCCTAATCCCCCAGAGCCTGGGGATGCACCCTGTGATAAACACAGTGTTACTAGTGACCCACAGTTGTGCAGATTGGAGACACACAGTTCCCAGACCTCCCACAAACCCGAATGGTGAAAAGAGGCTGGGGGAGGTATCAGTAGGGATGACAGGTAT-----TGTTATTGTCCTGTCATTGGGTTAGATCGTCTGTTGATCCTCTCAGAGCAtgctgaaattaaaataatatcaattGTCATCCTCAGATTGCAATACATGGCAAAAACTTCTGCATGTCAGCCAGAGATGCTTTCAACCTTCtgatgagaaatattttaaagtaagtaaTCAGGCTGAAAG-------------TTTGTCAAGCCTCAGCATTCTATCCTTTACACACTGCTATCTGAAGTACTGGTCACCTTTTTAGGTACAAATAGTG--TGTTTTAAATGGAGAGAATTATGTCTCTCTCTTATTATCAATTTGCTTTCAGA--TTGGAGTTTTCATTTTCCACCTTGGTTTTTATCCCCACTGGCATTAT----CCCTCTACTTAAGAAATGGCCC----------CATCATCA---TCCTGAAACTGACCATTGCCCCCTCCCAAAAACGATGAAGAATAATTGGGCAAAatcagagcacacacacacatctgtagGATTCAGGGTGTCTCCATC

a score=32046
s chr3           154263840 1794 + 160039680 CCATGTTGATGTCTTGTATTTTACAACTGTCAGACAGAATTTTACCAAGGACATAGCAAAGTGAGGCCATGAGCTTCTGCGTCCTACAGATCCCCAGCACTGAGTG-TGTTCCCACGCTGACCTGTACTTTCTTGTCTCCCCTGATGCTCAGAGTCACAGTTACAGATGAAGTCACGTACTTTGTATTACTCCTGGGAAAAGTCCTGGTTTCTGGGATTGTAGGTAAGTAGTGTTAACAGCATGGACGGAAAGCTGTGGAGAGTT-----TGGAAACTGCCTTCTGCTACAACAATCTCCACAACCTTTCTCAGTATGTGACTCCCATGT-------------TCTGTTCTTTCTATGTAGGTGTCTTGGCCTTCCTACTCTTCACAGAAAGACTACAAATAATTGTAGATGGACCAACGACTTTAAATTACTACTGGGTCCCCTTCCTGGTAAGAAATGGTGGCTTCGTC----------------ACAAAATCCACAAAGGGTTTGGCAACAGAAATGTGTTCCTTGGATTTTGAAAGGCTGGG----------AGGTGCCAGCTAGG--CTCCCTCACAGATGTGCTGGAGAGGAAGAGGGCAGAC----CACGTCTCTTGGTAGCA-ggcactgatacctgtagagaggtctcaccattgtgacctcactacctcccaaaccccttctcttc-agccctatcacgctgagaattggggctttaatgtaagtgttggggaag-------------------cagttcagtctatggAAGCTTAGCACCACTCATGTCATGATCATTAGAGAGGGAAACGTAAGAAAAGAAAAACAGAAATAGGAAAAGCGGTGGGCATTATTTTTCTTAATCTGTGCC---------CCTCGCCTCCTGATTCAGATGCTGAGTCCCTTGGAAAGGACTACTCTGTTGATAAG-GTTGCGTGGAGAAGGTTTACC-GGGTGCATTCTCATGAGATTCACTTGTAAGGAAGTAAGGAGAGCTA-GGCAGGACAACAGAAGCTGGCTCACAATGCACAATGCTGTCCCCAGATAAAATGACAGGACCTTCTGGAGAAGAAGCTGG--CCTTGTGAATCACATCAG-CAGATGTTAGCCAGGAGCCAGGTCCCGAGATGGGGCTCTAA---CGGGTGAAGTGGTTCCCGACAGGGAGGGGATGCCTATGCAGAGAGATCTCTGATTCTTCTCTGTAGCCAACACTCCAGAGCTCTGGGGTGAGTGCATAGACGGGTGGGGAGAGCTGCGTGGAGTCCTGCTGGATCTGTTACAGGGAACTAGCTCTCTTTATCTGTGTGACATAGACGCTTCTTCCCCCACCCCCCCAACCCCCCCCCCCGCCCCCCGTGTCAAAGCA-GAGGCACAGAAAGGCTGAGTAACT--TTGA------------------AGACCCAGGTAGTGCATACTCTTAACCCTTTAGACTCTATTGCCTTGATGTGTGGGACCTTAAGGCTGAGGT-------------CCTTGGGGTAGGTACTAGGACCATTGGTAAGAGGTGGTCATGTGAGCAAGCACATTTTTGTTTTTAAATCTCAGGACAGCATTCTATCATACAATCAAAGGTGTCGGTAT--GGCAGATATTCCCAT-CAGAATCCTCCAATGCTTTCTCATCCCATCCTGCATTTGGAGTTGCGTTATTGCTGCTCTGAGTGATGTCGCTTCTCTTCTCTGTCTGTTCATAGACTCTTGTGTTTGGATCTTACATGATTGCTCACGGATTCTTCAGCGTCTATTCAATGTGTGTTGAAACCATTTTCATCTGCTTCTGTAAGTATCCAGTGTGTA---------TGTTTGGTGAAGGTAAAAATTCAGTTG----------CCTGCCTGGCTTGGTGATTTACTGTTACCTAGCTTCGAATGCagag
s HiC_scaffold_1 141255175 1850 + 233722169 CTATGTTCATGTCCTGCATGTAACAATTGCGGAGCAAATTTGCAGCAAAGATGCATCAAAATGGTCTCATGAGTTATTTCTTCCCCTCAATATCAAgtcataaatgctttttaaacaCAGTACCACACTTTCTTTTTTCCACAC---CTCAGAGTTGCAGTTACGGATGAAGTTACACATTTTGTATTACTCCTGGGAAAACTTCTGGTTACTTCATTTATAGGTAAGTGGTAATAA------AGAGGGAAAACTTGACAAGATTCTTAGTAAAAACTGCTTT--ACTACAAAAAGCTGTGTACCCTTACAAGGTGTAACATGCACTTGTGCACTTGTAATCTTCTGCTTTCTCAATGTAGGTTTGCTGGCCTTCTTACTCTTCACAGAAAAAACGCCAGCGATTTTGGGAGGACCAACATCTTTAAACTACTACTGGGTCCCTCTGCTGGTAAGAACTGGTGTCCCATTCAGTTGAGGCTGCTATAACAATACCACCAATAGG---------AGGAATTTATTCCTAAGAGCTCTGATGGCTGCACTATCTCATTAGTTCCTGATGAGGGCCTTCTTCCCAGAGCTCAGAGGGATAGAGAGACCACACCTTTCACGTCTTTTCTTACAAGGGCATTGATCCTTTCATCAGGATAGGACCTTCTTGATGGAAA-ACCTCTCAGAGGACTCACCTTCAAACTCCATCACATTGGGAATTAGGGCTTCAGTGTAAAATCTGGAGATGTTTTTTGGGGGGTGCATCACAGTTCAGTTCATAGCAACTGAGTACCACTGATTCTAATGT-ATCGgagatat-tacatattttaataataagaAAAGTAATAACGTTAGCTGACAGTATAGGTCTTACTGTATGCCAGCTCCCATCCTGCCCTCCGGATTGGGAT--------CCTTGGAAAAAACT--CCTGAGGCTAAGTTTTGCACACAAAATCCTCATTAGGAGGTCCTGTCCTGAGATGCATTTGTAAGGAAGAGGGGCAGGCCAGGGCAG--CAGCAGAAGC----------TCTACAGCTGAGACCATAGATGTAATTCTTGGAAGTTCGGGCAAAGGGACTAGACCTTTGCAAACCACATCAGACAGCTGGTCACCACACACTAA--CACTGAACAGGTGTGTAAACTTGGGTGAGACAGCTCCCCTGGGGAGGGCAATTCCTAGTCCTGGAAGCAGCTGAGTC--AGCAGTCACCTACGTTCCCCAAACTAGGTATGGGTGGAGCAGCTA--GGAGAGATCTGGGTGGGTGAATGCTGCATCTG---CAGTGTATAAACTCTCAACA----CGTGACGTAAGTGCTGTCATTCACATTCTCCTCATCCCTGGTGCCATC-------TTAATGAAGGAGATgtagagaggttaagtaactggCTGAGAGCTCAAGCCGTGATTCAAATCCAGGCAATATGTGATTATAATCCCTTACGCTTTACTCCCTGGCTATCTAGGATCCTAAAATTGAGCTATTTTGCTTGGCCTTTTGGGGAAAACAGTAGGA-----------AAATGGACATGAAACCTAGTACCTTT---TCTGTAGATCTCAGGACAA------AGCACACAAAATTGTGCATCTGTATTCTGAAGTCTTTTCAACACATAGTACTTCAAAGTTTTCTCATCTTGGCTTTCGTTTACAGCTGCTTTATTGTTCTTTAAACT--TGTTG-GTCTCTTCTTTACCCATTTACAGACTGTCATTTTGGGATCTTACCTAGTTGCTCATGGCTGCTTCAGTGTCTATACAACGTGTATCGAAACAATTTTCCTCTGCTTCTGTAAGTATTTGGTGTGCAGGGTCCCCTTGGTAGATAACTGTAAATGAGAAGGTGACGCCGACACCTTAGCTGGCTTG--GATTTGTTGCTGCCTGTCTGCAACTGCAAAG

a score=89148
s chr3           154267543 4203 + 160039680 [encoded data, 4774 characters]
s HiC_scaffold_1 141260072 4473 + 233722169 [encoded data, 4774 characters]

a score=28636
s chr3           154273969 1108 + 160039680 AAAACCACATCATGGAAGGTTCTAGAATCACCTGGGATAACACAATGC-ATTTAAACTGGTATTAGAAAAAGGGCGCTGTACAATGAT-CCTTACCCTC--TTTAGTGTATGGCCAGCCAACAC-CGTTCCAATGTGTATTCTTTTGCTCTTATAA-TGGAGCCTCAGGAAATTGCTCTTAAATTCTAACCAGGCAGAGTATTTATCTCCATTATTATCTGGTTCTGGATTGAGGGACATGCTTTATAGATCAGTCTTGCTTGGAATAAGATATGGGGACACAATTGAATGAAAGTCATTACTGCAGTCTGTGGTG----------TACCTTAACCTCTTTCCCAGTTGCTTGCAAATATTACTCGTGCATGTTTGTAC----------TTTTAAAATACGGTTATAGGGTTACAATAATACAGTGTAATAAGCCATTAAT--TAAAATGTATGA--TCAATATCTCA-GAGGCACTGAAATCCACAGATTTCTGTCTTATAATCTAATTTTCATTAACTTGATTTAATTCGGAAAAGAATTATATATAAAAATATATCAGGAATAAATTATTTCTTCAAAAATTATTTCTCAT---ATATGTTTTTAATCTTGGAGCCAAAATGGGGATTGCAGACGTTTCTCTCAGGCTCCAGCTGAGTTGCTGGGGAAGCTCAATGA---CATCAC--TCGGGGAAC---ACCAGTCCCATTAAGACAAATTCAAACCCCCTCACTCAGAGTTAGTTATG-------CCATCCAATA--TGAGTATCTGGATAAAGCCACAGGTAAAAAGGTCTTCTTACAATTTGCCAGGCCAGAGTGAAGCATCTCCCTGTTC-ACTGATGACTTCCCAGTTGCTTAGAAGAAAAGTTACTCAAGGCAGCAGAGAATCTGGGGATGTCTTCTACCATGGCGTCGTCTCTACAGA----GAAAATGTGGGCTGTTGTGTTGACACATTTACAAGCAGTTGATTAGA-TTTATGGATTGAAGTGACCAAATTCTTTCAACTTAACTGGCTCTCTCTCTCTCTTTCCatatatatgtatgtatatatatatatatatTTTTTTTTC------TCCACTGCATGAATCATAATGATGTAGGCAAGTGAAGAAATCGGGAAAGCCCTTGCTAATCAAAAGTAGGTCTAGCA
s HiC_scaffold_1 141265265 1094 + 233722169 aaaatcacatgaggaACGTTTGTATGG-CATCTAGGGAGACACTGTGCTGTTTAACCTGATATTGGAAAGTGGACTCCAGGTAataattccttatttttcttttagtatctaGCCAACCAGCACTCATTACAGTGTAtgttctttcacttttacaagtGGTGGCTCAGGAAATTGCTCCTAAACTCTAACCAGGCATAGTAATTATCTCCAGTATTATCTGGTTCTGGATTGCAGAATATGCTTTATAAATCAGCCTTTCTTGGCACAAGCCATGTGGACAAAATTGAACCAAAATCATTATTGCAGACCATAGTGTATGAAATGATATCTTAACGTTTTTCCCATTTTCTGGCAAATGATATTCTTAGATATCTGTacattattatgtttttaaaatgtacctaTAGGATTACAAGAAcaaaattcaataaatgtttcataatgaaaaatatcaatGCAATAGACCATGCTCCATTGAAATCAACAGCTCTCTGTATTACAATCTAAATCTCCTTGTCTAGGTCTAAC---AAAGGAAATTACATGTGAG---ATGTTGGTGTTGAATTACTTCTT-------------TCATAGAATATGATTTCAGTGTTGGGGTT-AAGTAGATATTGAAGACTTTTCTCTCAGAATC-----ATGTTACTTCTGATCCTTAGTGAATCTAACACCTTTGAGAAACCAAGCCAATCCCACAAAATCAAACATGAATTCTTTCATTGATGAACAGTTGAGTACCTTCTTATCCAAGGCTTGAGCATCAGATTGATGTCATAGTC--ACGGTCCTGCTTAC-ACTTATCAGGCTGCACTGAAGTGT-TCCCTGTCCTATTTACAACTTCTCAATTGCTTTGAATGAAAGATAATCAAAGCAGTACAGAGTCTGGCCCTATCTTCTGTCATAG---TTTCTGTGCTGAGTTGGATAATAGGAACTGTTA-AATGAGATATTTAAAAGCAATtgattagattttattatttgaa---acc----------------ACTAgctttctct---tctttaaatttaACTCTTTG---------------ACTTTTTTCTTGATGCATCTGCTGGATGAATTGGAGTAATTTAAGCAAATGGGAAAATTGTGGA------TGCTGATAAAATGTCCATCTACCA

a score=18977
s chr3           154275432 1818 + 160039680 AAAAACCTGTGTGACTTCCTTTTCTTCTGACCCCTTGCTGTTAAGTAGTGCAGTGTGCC--CAAGGTGAGGAG-GCTTATCAAAGGAGAAAGCTGTTTGTCAACTGTGTATAAACAAACATGGAGCCTGGGCTTGCATCATTGTTAAAATAATCTTGGGATTGCTGTGTGCCGCATTCCTCTACCCAGGTGACTGTCCCTGGCTGAGTGCAAATGTGCACAGAAAAGACCACAGGTGAGATGCTGGGCAAAGCAATGGAGTCCAAGTGGGGAACAGAAA-CCCTAACAA-ATACAAAAAAATCTCCAGGGCAA--CAATGAAGGCATCG-------------GGTGCCTTCTGAATGTCACCCGTGGGCCTATTGAAAAAGCAACTCAGCAAATTAGAAGCCAGTAATTAAACAAATGCAAACAGTTCTCAGA--ATCTAATGAACAGCTCGGAGCAGACTGTGTTACAATAAAGCTAATCACTTGGATGTATCTAGCCCAAATAAACAACATAAAAGAATGATACCCTAATCTGGCTCATGGTTAAGGAATT-TAAAAACATCCTCCCCTCTCTTGCAG------------AGCAAAATATTTGCTGCCACCAAA----GGTGTG-TCCTCTTCTCTCTACACCGGGA--GACTCGCTTTCTGCTTTTCCCCCTCTCTGCCTTTCTCT---GCCTCTGCCCACTCTGGCAAGGCAGCCTCTGACTCTTTCGGCT-----GCTTGTATCAC----TTTCAGAAGGAAATGGAGGTGGGAAGGGAAAGGAAGAAATG------AGGACTCGGCCCAGGAGCACAGATGGCACTTTGGGCTACCAAGTCCTGCTTATGAGTCCTGAATGACTAGAGG----CGTCCAGGAAGGCCAACCAAGGCTTGATGGTAACAGGCTTAGAGTCAAAGCAGATGAGCTTCTGTTCCAAGTGTTGTCTGTCCCACGACTGTGTGGCCA----------------------TCCTTAGCTGAACATTGGCGTTAA---CCTTTGCCCTGTGCTAT-----------------GCTGTG----------CCCGTTCTTGAAGGCCTGGC----------------GGTGATTTGAC--ACACTCACCCTGGTCCTGTG---CAGTAGATTTGAACCACA------------------------AAAGCTGA----AGCCTCCCTGGGCTGTCACCACAAAAGC---------TGGAGA------------TGTCACCCTGTG-CCAGGCTGGAG--------AGATGGGAAGGTG---TGCCCCACCCTCTCCAAAGC-TCATCCCAAAGCCAGCAGAATTCTTTATCTGAGCTCGAGTTCTTGAA-CACTGGTGAC-----CAGCTCCCCTAAATGG-CAATGGACGTCTCTCTGGGATCTCAGGCTCTGAGTGGACTCCTGCCTCATCTCCATATCTTGCCTTCTCATTTTAACATCTGG-ATTAAA----CACTGGGT-TTGTGAAGCCAGTGAACTAGG----------ACTGCCCCTGAACCTTGGCTGGTC------------------CCTGAGCAGCATCTGAAGTCAGTGCTGTG----TGGGTGACTATAGCCTCGAACACTCGGCCTGCCTTCGACAC---TTTGTACTTCTGGAGGGGATTTCTCTCTGTGAACCTTGC------------------------TGCAGGGATTTGCTTAATTCTGAGTCACAGCTCTGCATTGCTAGGCAAGAAGCCCTTGCTGAAGAGAGGTTGTG-----------GGATGAGGGATCAGCCCCAAGCCTCACA-GCGAGGC-------------------------------------------------------GAGGAGAATCCTACCTTAGAACCAATGTCCTTTCCTTTTGGGTGGGTCCTACATTTATCTTTCGGTGGCtgagtgtgtgtgtgtgcacgtgtgtgtgtgtgtgtgtgtgtatgaatgtgagtgtgtatgcaagagagagc--------ccttAATCCGTGCTATTTAAATAAGCATAGTGTTTATTTCGATTCTCCATGGAAACCGATGAACAGACAAATCATTTTGCCACCTATCACCCTAGTTCTGAGATAACATAGTGTTTT
s HiC_scaffold_1 141266366 2032 + 233722169 AAAAAC--AtggtacattttttctttctgaagcgCTACTGTTAAGGAGCCCAGTATGTTAACAAGATGGGAAAAGCTTATCAAATG-GAACAATATTTGCATGCTACCCAAAAGCTAATGTGGAACCTGGACTCGGTTCATTGCTAGAATCACTTGGGAATCTC-------CACAGTCTTTTCCTGAAATAAATGTGCCCTGCTGCATAAGAATCTGTG-AGAAAAGA------------TGTCCAGAAAAGCTTTAGTGCCCAAGGAGAGAACAGAAAATCCTAAGGATGTATAAAGAAGTTTCTAGTGGGATTCAAAGAAGGCAATGCCACAGGAAGTGAGGAGCCTTCTCACTGTAATTCATGGATATACTGAAAGAGAAACTCAGTAAATCAGAAGCCAGTCATTACAcaaggaaagatatttttttaGTCCTCTGGTAAACAGCAGGAAGTggaacattttataataa----aatcacacaaatGTATTTAGCCCAAACAAAC----------AGTGATGTCCCAACGTGACTTATgattaagaaattataaaaacatctGCCTCTTCTTTGCAGGGCTCTCACGTTAGCCAGAGCTTTGCTCTTGTGAAGAACTAGtgtattctttttctctccacATGAAGATGGATTCTCTTTCACACTTTCTCATTTCTTGCATTCCACTTTGGGCTCTTCCT------------TGATCTCATTTTTCCTTGACTAAGAAAATTAAAGTACAAGGCTTTTGAAGGAAATGGAGgtaagagaggaaaagcaagagTGCAAACAAAGTCTTTGCCCAGCAGCCTCATCTGTGCTATGGA-TGGCATGGTCTAAGTGTGCGGTCTGAAAAAGCAAATGGTACAGCTCGGTGATACCGCGCAGAGGCTGTCGGCAGGAGCTTTAGAACCAGACC--GTGAGAAGCTGGTTGCAATGTCATCCTCCACCTGAGACAGTGACCAGGTGTTTAGTTGCTCCGAGGTCTTCTTAGCTGAAAACTAAAGCTTAGTTCTTCCTCCCAGTGATGTTAGGATAAAGCCTAAGAGCCATGTGAATGATAACCCATATCTGAGGGCCTGCTCCATAGACATGCTCTGTGTGTCTTGGCTGGTACTGGTGATAGTCTCTTGGCCAAGGAGACTTTGACTTCATTCTCCCCTTTCTTCTCCCAGGGGGTAGCTGACAAGGGCCTCCCTGAGAAACTA-GAAAAAAGCTTCCCAGTATTGATAGCCTCCTCCCCCCATCATCCTATATCCAAGCcagagtaaataaaaaatatgtaggTGACATGCCTT-CCATCTCCTTAGCTTCCTTCCAAATCTCCCAAAA---TTTATGC-AGCTTGAATTCTTGCGTCACTAAGGACGCAAGAATTCTTTTTGAGTAACCCATAGGAATTTTACTGAGATTTCAGCTT----------TCCTGTCTTtactat-taccttcttttttaattttaaattctggcATTAAATCAGTATTCAGTATTGTGAAGCTTGAGAATTGGATGACATTTCTACAGATTCTTGACCTTTACTTGTTCTCTAAGCAATGGCGAAACCtgaataacatttaaatttaatgttgCATAACTGGATGATTGTAGCCTGCGATGCTGAG---GCCTTAGATATGCACTTCCATGTCTGGGGGCGGGTTTTCTCTGCTGACCCTGTTCCACACAAGTTCGTACAGTGCAGTGGAAAGACTTCCTTTATTCTGAGTCCCCAAATGGAGTTGCTAAGCAACCAGC---TGCTAATGAAATATTGAGTTTTGTCCTCAAGATGA-----CCACTTTGAGTCTCACATGTGGGACTCTTGTTTTCCTGTGGCAGACAAGATAGCTTTACCAGTCTTAAATAAAATCAGCAGAGGAGACACCCATGTTAAAAGCAGTACTCTTTTTCCTTCCATGAGTCTTCAATT--GCTTTTAGTGAcc--------------------------------------------ataaaagacagaaaacagaagtgaACAGATATTATTTTATGCCATACTGTTTAAGTAACCATAGTGTTTATTTCAACTCACCATATAAA--AATG---TGGCAAACC-CTTTGCCACCTATAACGTGAATCTTGAAATATCACTGTGTTTT

a score=40776
s chr3           154284221 1698 + 160039680 TTTGCATCTTGGCATGTTTCC-TCACAGAAGGCAGGAAAGGACATTGCTGATGCTGTTTCCTAAGGATAAAGTCTCTCTAACTGGATG-CTCTTGATCAGGTTTGAAGCTGAGATTTCTGTCCAGTGGGGTTGAGT---CCAAGGCATGG----------CTGTGACCGGCTCCCTGTCTTCAT----------------CTGAACGCTGCCTGCTCTCCTGCTCA-CATTTCCTGGTGAGATATGCTCCAGCTGTCGTTCCCTCAGAAGGTGCTGGCACAGACAACCTCCAAAATAACTCCATTGG-----GCTGGAGACAGCAGGCCTTGCAAGGGCTGGGGGTGGGGATGGGGAGAC---CTGCTTGTGGGGACCTGCATTAATGGCCTTGTGGATTGCCTTGGTTTTCCACACATCTGACCAAGTCAATTTCCTGTGTTGGACCTCTTTCCATCTTCT--GAAACCCAGAGCTTTCTGCTCTTCAATCTTGGCCTGGCTCAGTGGGTGATGGATTTTAATTTTT--CTGCTTAAAAGGTACCAAGTGTTTGCCTGCAGGAAGGAGCCCAGAGCAGCGCCAAGGGAGAGACATAAAGTTTAA-TTCTTTCCAAATGATAGAATTAGGTCGACTTTTTTCTTCTCCACCCCCTCTCTCTTTGTCTTTAATTTATTAAAACT---TTAAATACGCATA--ACAAAACCAACAGTTTAAACATAAAATTTTATGATGTTT--AACAAATATAACCA-------CTGCCACAATTAATTCTTGT----AATCCCTTTGAATAAAACATTAAATAAGCATGTTAACACTTCCACTAACATCATAGGACTATTATTAGCCCAAGAATTGGTTGTTGTTTTTTTTTTTCTGCTCAGAAGGATTGTGTTAGTCATTAAGACATTTTAAACATTGTAATGTTCTGTTTACACCTAAGAGAAACTTCCAGTTCCTGAATACACAGATATAAATAAGCAAGATCAACACTTCTGTGCTCTAATACAATTGGTCCTACCACATATACCTTTCAAGTCCTCCCCCACGT--TTGTCTAGTCTGAATGACGTCTGCACGGTTTGTTTTAAAGAATCTTGATTTTATTAGTGTATTTGAGCAGTTATTTATTTAGAACAAAATATGTGGTATCTGTTTTAGTCACTGTGTTTACATTCCAGCACTGGGAAAGCAAC-CTGTGGAAACAAAAGAGAGAGAGAGACTCAGATGTCAAGCTCGGCTGTCACACACACTCAGTTTCCAGCCTGAACAGAGAATAATTACAGCAT-AGCAAGAG----AGAGAATCTGTCTACAGTGTGGTCATCAATGCCAGAGCCATA-GGGAGGAAAATAACCCTGATTAATGAACCCTAATCTGAATGATTCAGGATGACCAAACAACCCCCCCCCTACCCCCAGGCAG-----TTTACACAGTGTGGAGCTCAGAGCGCCAAAGAGACTTGGTTTAAAGTCTTACTTGGTACAGA--GTTTCCGTAGCCTATCATTCCCCCAGCCTCTCGTTCCAAGggaccca-gct--aaatggaatccttctctgaaatgattcctttgactctccagggcagactcagccactcccttgtctatccctcccgtggctcctagggttctacactttttgagccatggccactgataaca---tggttatcagtctgacttccttcttgggct-------------aggagccacctgaggtggaccgtgtctcttcaatctgtatgcagccctagcaaagaaactACTTGTTAGT
s HiC_scaffold_1 141273621 1695 + 233722169 TTTGCCTGTCAACGTGTTTCAGTAACAGGAGACAGAAAAG-ACACAGCGTCTGTTGTGTTGCAGGGATCAAGCGTTCTTAACTGGCTTTCTCTGTCTCAGCTTTGGAGCTGAGGTTTCTGTT-AGTGGAGTAGGGTTTCCTCGGGCTTAGATCAAGGGCTCCGGCATCTGCTCCCTCTCTCTGTACCGAGGAAGCACTTTCCACGCACCACCTGTGCTCCTTTGTAGCATCCTTGGGTGAAACGTGCTGGCACCGCATTTCCCTGAGAAGGCGCTGGCA--ACCACTCTCCGAAATAAATCC--TGGCAGCTGCTGAAAGCAGCAG--------AGGGC--------GGGATGCAGAGGCAGACGCCTTATAGGAGCCTTCATTAATGGCCTTG-GGTTTGCCTTGATTTTCCACACGTCTGACCAAGTCAATTTCCTGTCTTGGATCCCTTTCTGTCTTTGTAGAATCCCTAGGTCTTTTACTCTTCATGCTCAAACTGGCTATGGGGGTGAtcgattttaatttttttctgctgaAGATGTGTCAGGTGTTTGCATTTTGGGAAAGATCCAGATGGGTATCCAGGGAAGGACCTAAAGTTTACCTTTTTTCCAAATGATAAAATTAGAAG-------------TCTACCTTCTCTTTCTTacctttaaaaaagttaaaattattttaagtgggCCTATCATAAAATCAACCTTTTAAATgcatacttttattatttttgaaacgTGTATAGTCATGTCACACCACCATACTTGggtccttttaaaaattcctttgaacaaaatattaaataactatGTTAATATCTCAACTAACA-----GAACGATTATGAGCACAAAACACC----CTGGCTTTTTTTCCCCACCAAGGAGGATTGTACTGTTTATTAAGACATTT-AAACACTGTAACATTTTGTTTATCTCCAAAAGAAACTTCCAGTTCTCGAAAACACAGATAGAAATAGACAAGATCAACATTTCCAGGATCTAATACAACCAGTTCTACGATGTGcacctctaaatttctttttttctttcttgtttagtATAAATAATGTTTTGATGATTTGTTTTAAAGGATCTTGATGTTATTA----CCTTGAGCAGTTACTTATTTCATGCAAAATAGATGATATCTGATTGAGAAATGGCATTTACATTTCAGAAGTTGGAACATAATGTTGTGAAAGGAATATAAGCAGAGGCACACAAATGTCAAGCCCAGTTCTT-CAAAT-CTTACTTTCCAGACTTGGGAGAAAGTGATCATCACATGAACATCTGGCTAAAATAATCTGCCAGGGGCTCCGTCTCCAA-GCCAAAGATATGTAGGcagaaaataata--gattaacacaGAATAATCTATATGGTTACAAACAGtgaaacaaa---------agtcaaaaaaagGTCCATTTTGATAGCTCTGACCTTtcagttttaagaaaaacatttttttctctttatttattaaagACCTTTTCTCTACTCCATCATTTATTTGGTGTCTCACTTTACAAGACTCACGCCAAAAATGAAATCCTTTCTTGAGA----TTTTCTGAATCCCCAGGGAAG--TTAACCGGATCCAT-------CTTCCTGC--------ATATTGAACACTTTATG------------TCACAACAGTCTGTTTACaagtctgtctgtcttcctgggCTGTCTTTCTCCTTGAGGAAGAGGCTAGAATTCACCCATTCTT----ATTTTGACAGAGCCCCAGCAAAGAACCAACTTGTTAAT

a score=16952
s chr3           154287208 398 + 160039680 TTAACAGCCAGCTTTCTCTTTAGAAACTGGGTTGATTAAATGCAAGAAAACAGAGAAAAGATGAGAAAACCTTGACTTTC-ATTTGCTTTCTGGTATCTTCTTTTC-TTTCTGCAGAGAGAAAAGCAGCCTGCTTATGTTTTGATAATACTGTTTATCTGT-GGATGGTGCAAGCAGGAGCCAGCTGTTTCCCATAAAGCTATCTTGGGAAATCACACCAGAGCTGTCCA-GAGAGCACATGCTATCTGATTCCACTACCAGGGGGTAGTGCCTGCTGAAATGCTGTAGGAGGGCTTTCT--AGAACAGGCCAAGATGTCAAGAATGGTTACTGCTGACAGATGCCAAAGTCAATGTGAAGTACATAAAGAAGTGGGAAACT---CTTCTCTCGGAGGGAGAACGGA
s HiC_scaffold_1 141276615 401 + 233722169 TCAATGGCACACTTTTTCTTTAGAAAAGGCCTTGATTAACTACAAGAAAACAAAGGGAA--TGACAAGATCACAATTTCCTGTTTACTTACTGGtgtcttgttttcctttattccAAGAAAGAAGCAGCCAGCTTACGTGTTGATAATGCTGATAATCTGTCAGATGGTGTGGGCAGGAGTCAGCTATTTCCCAGAAATACAGCTTAGGAAATAGCAATGGTGCTGTCCATGATGGCACATGCCCTCTGATACCATTTCTAGGGGGTAGTTTCTGGTGAAGTATTTTAACAGGGGTTTCTAGAGAACAGACCAAGATGTCAGGAATTGTTAGGACTGATGCATGCCAAATTCAATGCGTACTAagtaaaga----ggaaaatgaaattctctttgagggaagaagga

a score=21160
s chr3           154292418 1879 + 160039680 CTTTTCTTCAAAAGAAGGAAGCTAGAAAGAGACAGAACGCTGGCATTTGGAGATTTCCAGGGAGGGTTTCTAGCCGAGAGTTATTTTAAGGCACAAGCAGGTAGTCTTGTGAAGACT--GGAGGAACTTTGCATCTCACAAG-GAGGCCAAATCCCTGAGGATCTGCTTCTGCAGCAGAGTCCAGATAGTTTCTCAGAGATGCCAAAGCAGGGGGCCCAAACAGGCTTAATCCTGCTCCTGTGTCCAAAGAAAAGT---CATGAAGGAGGACAGGGACTCGGGGAGGAAAATGAGAAGATCTGATGAG-TGACTCCTAAGG--CAT-CCGACATCTGACAAACACCGAGGCCCCGAAGATGACGCAAAAAAAGTGACATTAA----TATTCCAGGCAGACGAATTCCAGGCACATGCTCAGGAAAATATGTCCCAACGACATTCCTGCT-GAGCCTCAG-----TCTGCTCGGGAAGATGATG-AAGTTTCATACCCAAAACTAGGGAGAATGAAAGGAAGCTAGGATGCTGGGTGGGCAGGGGAGGGGCACAGGTGTGTGGGGGAGGGGTCCTACACTAGGTGCTTCCCGA---AGCCTCCCTGCTCCTTTCACTGTGGTTGGAAGACGGACTGTGGCAAGGGACTTCAAAGGCATTCAGATGA----------CAGTT------------TGAGACT----TCTTTTACCGTGTGTAACCTGGGCC-TAAGTACCTAGCCCAGC--------------------------------TGACTTTACAAAGAG--------------AACGGGCCATGTTCTCTGCTTACGACAGGGCTACT-ATTGG----------------------------ATAGTCACACA-------------------------------GGGCACAAAGATGGGACTGAAGTGTTACTGCCAGAGAGCTGTTTTTATGCTTCAAGAGAC-ACGGA-GAAGGAGATTTTTACAAGAGCTGGGAAGAAATCTCTCTGCTTTAAAGCCCCTCT----GAGCACACCTG-----TCC------AGGTCCCCTCCCCTCCAGGAACTCGAATCACGCTTCTGTGGTGGGGGCTCAG-----AGTACA-------------------------AACTCTCTATT--CTGTCTGCCAA-----CACAACTTAACACGCT---------CCAACTCTCCTTGCTGC--TCAGTCTTTCCATGCTATCTCT---TGGAGAGGAGAAAAGG---AGAAGTCGGAGAAA-----------------CTTCAGAAGACATCATCTGGAACCTGAGGCTG---------------TCTGACC---AGTGAACCC--------------CCCCTCCC-------------------------------------------CATCTTTAC--------------------AGTATAGACATC-----GTCTGGAACCTGAGGCTGT--CTGACCAGTGAA-------CCCCCCCC--------CCCCATCTTT-----ACAGTATAGACATCGTCTGGAA----------CCTGAG-----------------------------GCTGTCTGCC------CAGT-----CAGCTCAAGTGTAGAGTGCA-----TCAGGAGCTGCCTCACACCTGCTTGGCTTC--TCTTCTCTTAATGCACAGGCACACCTGT-GAGCTACTTTGCTTCGTCCTTACTGGCTCCGTCTGGTGAGGATAGACTCTGATAACACCACCTAGGCCCCACCACGATAGTTGGATACTCCACCACCACCTAGCCCTCCTCCCCCACTTTGGAAGAAGTGG-----TCTGTACCGAGTATAACTGTGCAAACAAAGAGCA-----ACGAACTGTTA-----GGCTGTGCCTCTA-GTCACTTAGTGACTCAGAATTCCTACCTAAAAAATAGAAAATGAGCTTGAGCCAATGTCTCTGGGATTGGCCAAAACGTCTGGATATTTGGAAAGACTCAGATGCTGGGTACCAAATACACCCATCCTCTCCAAACCACTGAGTC-AACCTTGGCAGCCAAGAGATGCCAAATAGCATTT-AGTCAGAGATTTCATGGGATTAAAAAGAGTCAGTGAAAGGAATTTTGCTATAAACAAAATAAGTCCAGTTGTTTGTTATGATTTTTGAACCCCCAGGGCCagttaagttctcagcgtgccttggttggttagcttcccacgccacctgcctgccattctttttaagtcttcagtgtaacatatgt-gctagatcggggctgaagaga
s HiC_scaffold_1 141282309 2199 + 233722169 CTTCCTTCCAAACAGACCAAGCTGAAAAGAAGCAGAATGCAGAC---------TCTGACGTGAGGGCTTCCAGCTCAGAGCTATTTTAAGTGACAAGCAGGTAGCATCATGAAGACTTGGGAATAGCTTTGTAATCCTCAGGCGAGGCTCAGCTGGCAAGGAATTCCTTC---AGCAGAGCCTACGCTGTTCCTCAGAG----TCAGGCAGAGGGCCtgaat--tcttatttttgtttccatttctaagGAGAAGCTGGCAGGGAGGTGCATTTGGATTCAGAGCACCAGACGAAGGGAATGGATGAGATGATCTCTAAAGACCATTCCAGCCTTCTGCAAGCACGGAGGGTGTGAGGATGACA-AAACAAAGGGAGATTAAAAACCATTCAAGGCTGGAGAAC-CCAGGCAGAAGC-CTGGAAAATATGTCCCAGC-ACATTCCTGCTTGAATCTCAGAATGCTCTGCTAAAGGAAAAGATGTGCATTTCAAACTCAAagttatggaaaataaaatgaggct-----GCTAGGCTGGGGGATAACGTCCAC-------TGGCGGAGA----------CAGGAGCTTCTCTGTCCAGCCGTGGTCTTCATTTCACCGCG------------ACTGTTAGAAGCAGCTTCAGATTGGTTTGGATGGATGCGCTCCGCAGTGGCTACCATCAAATGACCCTACGCTCTCTTGAAATCTCCAATTTGAGCCATGATTACTAGACCCAGACTTAAATGGCAAAATCACAAATTATTTAACTGTGACTGTCGGAATAGCTCAGCAATAGTGTAATGGCCCAATGTGTCTGTGAGCAGCAGTGCAAATCATTGGGATAAGCTGGGGATGGAGTTTGTCTTACACAGTCATGAAATTAGACTGTAGAAATCTGCTTAATGAATAAggacattaaaatgaaattaaaatgttattgcaAGAGAAGAATTCTTGTGCTTCAAGAGATGACAGATGAGGAAAACTTTGGCAAGAGCCAGAGATGAAACAAGCAGCTTTGTAATTATTCTTCCAGAGCATCCCTGAAGTTTCCGGTGTGAGATTTCTTACCCTACACAAACACCAATCATTCTGCCAAGCTGTTGGCTCAGCATTCAGTGCAGGAGATAAAGTCACCAGCATtggtgaactttttagagactgagtgcccaaactgcaccccaaaacccacttacttataGCCAACTGCCAATGTGGCAGTTAAACTTTACTATCTGATTCTGGCTGCTGAGGTGACTTGGCTCACATGCCAGTGGAAAGAGCTCTGTGTGCCCACTGCTGCACACAGCATGCGTGCCATAGGCTCGCCACCACTGCTCTGTTCTGTCCTTCAGCAAAGCCGCAGACTCACGATGCTTCTCCCTCTGCCACTCGGTGGCAAAGATGGCTTTCCTCAACCTGCTTAGCATCATTGCTTTGgtggaaagaagagaagggaagagaaatctTTCTGCTTgggggctgaggatgcagctgaGTGGTGGAGGGCTTGCCTTGCCTgattgaggccctgggtttgagccaCAAGAAAAATATCCTGCGAAAGAAAGTGTTCCTTGAGATGTGAGAGCGCAGATGTCTGAAGGCACTGCTGCCTGCTTTACCTCAGCTTCACCATCTTAACAGCAGAGCGCAGTCCGTCAGCATTAGCCTGA--------TGGCTCCAGTCTTCTCTCAAAGCCCA-----ACTGGTAGAGCTACTTCCCTT------TATTGACACCC---------GTTAGTCTCT-----------TTAGGC------------AAGGGATTCTCATGGAGTACACAAGATTCTTCCC--ATGTTGGAAGAAGTAGAGGCATTTGTGCCGAATGGCACACTGagtatagaaaatatatatatatatttttaaagttggcTCCATCTCTTTGCCATTCACTGGCCCAGCTATTCCAcctgaaaattagaaaatgggCTCCAGCCCATGTCTTTGTGACAAGCCAAA-TGGCTGAATATCTGAAAATATGTGGTTGCTGGGTACCACGTACTCTCATTC-----AAACAAATGACTCTCATCTTGGCAACTGAGGGATGCCAAATAGCATTTCAGTGCAAGATTTCATGGAATTTGAAACAGTCAACAAAAGGAATTTTGGTGCAAGCAGAATGGATCCGATTGTTTGTTACAATTTTTGACCCCCCAGGGCTGGTTTGGTTCTGAGGGT------CTTGATTTGCTCCCTAGCCaatctccctcc---tctctctcaaTCTTTGCTGTAACATATGTAGTgatggtggggtgggggaga

a score=15836
s chr3           154297176 949 + 160039680 TGAAAACTAATTTTGTGATCTTCACACTAACTCTAGTGATCTGTGGTCATGGATAACGAGGAGAAAAATTTCCAAT----ATCTAAATCTGAAGACAAAAAGATTTCACTGTGTAAAACTCAGGACAGAAATGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGAGAGAGAGAGAGAATATGAATATTTCTCTCCAAAATTAAAAGTCAGCAGAGCTT-TCCAGGACACAG--AGAGAGCAGTG-----GGCATTCCCATGCAAAACTCTTGG--TTCTCTGAGGACTAATGGACCAACGTGAGCTGATGGCCCAGCACAGGTGCCATGGGTAAAGAGAAAGAAAGGCCTCA--------GCCACATTAGA----------CAAGAGCCA----------GTGAGGAGGCTGCACACTGTGGCCACATTTACACAAGGAAAGCCAAGTTGAAGATTTGAGCAATTACCCCAGTAACTACAGGCTGGGGAGCCAGCCAACTTGGGCAACTCAGATACAAACATGTGTGCTGGCTGCTTCCCTCGCCAGAATTACTTGATAATCACCCAACTGTCTGTTTTGCTTAGATAAAGAGAACACGAAACAGGTCTGCATTCGAGGCAGCGACCTCCCATGGGCCACAGTGAAGTGGGGAGGTACAGG----------------------GTTGTTCCCAGGAGCCCGCCTCCAGCTGCACGGAGGTGTTAGCCA------------------CATGAAAGACAGTGGGTAGGTTCTGGGGACCCTGATGTGAACAATGCC----CTTCCCACAAAATTAAACTTGAGACAAAC--------------TTAAGAGGGGAAA---CCTAAATGTGTTGTCCAGACATAGTTTTTGAGG---------GAATACGGGATGCACGAAAGGCAACCGACCT-------GTATGGGGCAGG-------------------------GTTGTTGTGTGAGCTGGGTTTGAACTGTCTGTCAGGTTAT---CCAGGAAAGGACA-------AACGGAAGAGAGGAGCCAAGGGAAGGGGAACTTTGTCCTCCTC
s HiC_scaffold_1 141286889 983 + 233722169 TGAAGCACATTTCTGTGGTTTTCCCACTG----TGGTGGCTCACAGCCACAGGTCACAGGAA--AGGATTGCTGACCGGAGGTTAAACC-----ATAAAAAGTTTCCATTGTGTAAAACTTAAACCCGA---GGTGTGTGGCTGCATGTGTGTGT---------------------------------------------------------------------------CAGCAGAGATTGTCCAGAGCCCAGCTGGGAAACAATGCTCAAGGCCTTCTCACGGCA---TCCCAGCCTGTTCTGAGGATGAACACAGCAAGGTGAGCTGATGGCCCAGAACAGCTCTGGCGGGCCTAGTGACAGATCAGCTCTATGCTTGGAGCTATGTTAGGTAGAGAAAGGCAGGAGCCACTCAGCAGAAATGAAAAGACT-----CTGTGGACACATTGACACAGCAAAAGCCAAGTGGAAGATT-GAATAATTATCC-ATAAACTGCAGGCTGGGGAGTCAGCCAATTTGGGTAACTCAGATAAAAACATGTGCCTTGGCTGCTTCTCTTGCT-GAATTACTCGATAATGGCCAAACTGTCTATCTTGCTTAgctgaagagaacaagaaacaggTCTCCACCCAAGG------CCTTCCTGCGGCCACAGTGGAACAGTGGGGTGGAGGAGCCACCGATGGTGGGGAGGATAGTGCCCCTCTGAGCCACCTGCAAGAGGCCCAGAAGAGTTACCCATGGTACTGTAGTTAACCTTGTTAAAGTAGTTACCTCTGCTCAGGTGAACC---CATGCTCAGTGCTGGAGCTACTAACTCAAATAGACCCTATTCTAACATTTCTGAAAATTGTTCAGAGAGGAAAAGTCTAAGATATGTTGTGTAGAGATACTGTTTGCGGCTAAGATGCAAACACGGGA-----GAAGTTCATCCACGCTGAAGTGGGTGTGATGCAGGAAACAATGAGAGAAGACTTCCTGGAGATGGTGTCTGAGCTGGTCTTAAGCAA--TGAGGAATTATGAGCCAGGGAAAGAAAACTGGGGAACGGAAGGGGAAAGCCAGGGAACAGTGG----TGGCTTCCTC

a score=18259
s chr3           154299035 1027 + 160039680 CCTGCCTCTCTTTCCTTTG--GTCTCCAACTCCTCCACTTCTACCCTGCATAAACTGAGCATGCTCCTGAAAGCTGGGGCAACAAGTTTCTTCTTT----------------------------CCCAGCCTCACAGGTGTGGAGAGCCTTCACAAGGTGGCCATTCGATGACCTTGTC------AGAGTTCTTCTGATCCCTTTCCAAATGTGCATCCATGACCT-CTCACTCAGGCTAGTGCCAAGATATGCCAAGGAAGCTGTGGAGCTATCTGTGCCCTCTGAGACAGGGCCCATCCTGAGACGTGCCTTCCCTCTGAGACAGGTACCCACTGCCATCATTCGTGTACAGAGCTGTTTCCTGAAAGACAAACGATGAACTGAAAGGGCTGCCCACAGCCAGTCTCTCTTGGGGGAGCCTCAACCAAAGACAAAACGTGTGGTTCAGGATCACGTTGGCAACAGAGCCAACCCTTTCTAGTGTGTCTGAAAGAAATGAGCTAAGAACTAGTCG--------TGGTTCTCCAGAGACTTCGCCCTGGTTCCTGGAAGTAAATATTTTGAAATTGAATTTGTAACAATGTTTCCATTTTTCGAATATGGGATCACAACTACTTGGGTTTT---------TATTTT---TACAAACATTCAAAACACC----CCAGTAAACAGACTTACAGACTTTTTTTTTAAACTCAAATCACAGAGGGCGGTAACACCTCTACTTGACTGAAAACTCTATTAAGTTGGAGATGCGAGTGTGTGGACGGTGAATCTATGCTTTAAATTCGAACTGAGGCTGGAACAAGAGAAGGGCA----AGCCTGGGGCGCTCGCTTGCTGGCAGCTCAGGTTCCTCTGTGGGT-TTAGTGAGATGAAGGAGGGAG---------------------GGGACAGGGCAGGGCCTAGTGGATTGCCCATGCTATAGCAGCTTGTCCTCACTGGCCGCTTCTCCTAGCCCCAGCTCCACTTCCAAACTAAGGAATCAAGTTTTTAAACAGTCTTTTCTATTCGC---TTTCTTGCCATAGCTTCATAGAA---GCTCTTTGCTATTT-GGAAAACAGCATCAAGGGAGGCTAAATCTTC
s HiC_scaffold_1 141288198 1044 + 233722169 CCAGCCACACTGCCCTCTGTGGTCCCTGGCACCTCAGCCTGCGCCCTCGGTGAGCTCGGCATGATC-TGTGGACCTGTGCGCCTGTCTTCTCCTGCTGCCTGACTCGGTTTCACCAGTCTGTCACCTATCCTAACAGGGGCGGGCGCCTGTCATGGGGT-----TTGGAT--CCTGGTCTACAGCAGCATTTTCCTGATCC-TTCCCCTACGCACTTCCATATCTGACGCCCCCAA---AGTGCCAGGCTCTGCTGCAAAGCCTGAGAAGCTGGCTTTGCCCATCCAGACATTGT-------------------------------GGTTTTTACTGTTCTCGTCACTGCACCAGGCAGTGTTCTGACAGACCAGTGACGAAGGGGGACGACTGCACATGG----TCTCGCTTGGAGGAGTTTTAACCAGAGATGAAATTTGTGGTTCGGAATCACGCTGGCAAAGGAGCAGACTCATTCCAA-GCATCTGAAAGAAATGAGCTAAGGACTACTCATGGTTCTCTGGTTCTCTGGAGACTTCATCCTggttcctggaagtaaatattttgCAACTGAATTTGTAACAATGGTTTCCATTTTCAGACATGGCACAGTAAGTCTTTGGAgcttaaaaaaatatgttttgtgtGTGAATATTCAAATCACCTCTGCCAGTTAAAGTACACAAAGAC----TTTCTACACTCAGGTCA-----GGAGGTGACACCACTGCCTGACTGTGTAGCTCTTTAAGATCACCTT-------------CAGCAAAGTGATGTTTTCCATCTGAACCGAGGCTGGAATATATGGACACCACCATAGATCATGGAACTCA-TTACTAGGA-CAGATGCTCCAGCGTGGACATTGGTGAAAAGAGCACATGAAACCCTGCTCCTGGGCCTGCCTGAGGAGGAGCA-GGTCTGGCCAGTTCCCAGAACTCCCGCAGCTCAGCCTTGGTGTCCCTGTCTCCAGTCACCAATCCCCCCTCCAAACTATCCAG-CAAGTTTCCCCCATATCTTGTTTATTCACCATTtcctttcca---cctcataaaacttTCCTTCCGCCATTGAGAAAAATAACACCAAGGGAGGGTAAGTGTCC

a score=97052
s chr3           154304244 4149 + 160039680 [encoded data, 4462 characters]
s HiC_scaffold_1 141292683 4040 + 233722169 [encoded data, 4462 characters]

a score=26678
s chr3           154311440 1621 + 160039680 TGTACCTGCTATAATGCTGTTCATCCATGACCGAGATAATCTTTCAAGACGTGAATGAGATCAACAAAGGG-----GTTAGAAGCTCCCAGCT-----GTGC-----------------------TACCTACCATCCATGTATGAGTGCAGCGCAGTCAGCATCGTCCCATCCTGGGGTACGTAGGCAGAATAAGCCATTTCTTCCAACATGGGTGGGGACAGCCTGGAGGAGGGGACAGCTGTGACGGGGGCTGAGGAAGAATGGTTGGGACTGACGTGTTTCTTATGGCGGGCCCTGCAGTTCTGAAACCACACCTGCCGGGGAGAAGAGTGTGCGGT-GAGGTCACACAGCAGC------------------TTCTGATAAGCAGCCTGAGGCACACA-----------TCCTGACATCCATCCACAGAACAAGCTTTCCAAAAGGCTGCATATAGGACTGGGAGGCCCTgaagccatggggttggttcatcacctgcctcacagaaactgtgtgtggtggtgcatgcctgtaatcccaacacctgagaggaggaggcaggtagataatgaatttgccaccccataggaagaacaacatcaaccaaacagatgtctcagggactaaacaa---ccaaccaatgagtatacatggagggacccatggctccagccgcatatgtagcagaggatggtcttgttggacatcaatgggagaagaggcccttggtcctgtgaaggctcaatgccccagtgtaagggaatgcaagggcgggg------aggttggggtgggtgggg-------gagtgggggagcaccctcattgaagcaggg---------ggaggagggatgggatagagggttttggggggtgggggaaactgggagaggggatatcatttgaaatgtaaataaagaaaatatccaataaaaattgattaattaattaattaattaattaaaggtcatttctggctgtgtggaaagctagaagccagcctgggatgtgccagattctgcctcaaaaaGTCCTAAGAAGTTCAAGGGTTGGAGCTAACATTGTAGTTCAATTATTATTACAAGTCCTTTCTCCCCAGCTATTAGTCTCTGGTGATTTCAAGGTCTATTCTATGCTAAAGAAGCATCTTTTAAAAATAGTAAAGCCTTGAGAATTTCAGAAACATGGCTCTAGTTTTACTATTGG---CATTTGGAAAAAGCAGAAAACAG--GAAAGGTCTTTTAATCAGAACTTAAAAAGAAAGTGCTGT--------TGTATTCTTAGACACCTGCTGGATGCATTTCAAATCCTTGTTCGAATTATTAAAGTCCCTACTGGGAACTCACAGCTTTCTACAAAATTCTTGATTGAGCCATCCCAGTCACATTTTAGCCTGCTGAGTGCAAGCTCTCTTAGTGAGTACACAGACTATTTCCTTCGAAGCACACTAAGGTCAA-CTCTATAATAAGAACAAACTAGTCGTATTTAAGTAGAATGAACTACAAACACACCCAACTGGT--AAGGCCTCATAAGAAACAAAGTACCAACCACTCTGCTATCCTCTCTATTGCAGAAATGA-AGCAATTCCAGACTGGTGAGG-------CCAGATCGGGGTACCTGAGGCCTGATTGCTAGACCATATCCAGAAACTAATTTGTATGTGGGAGGACAGTCTGTCATGAGAGGCAACATACAGAGTTATTCTATCAA
s HiC_scaffold_1 141298922 1354 + 233722169 TGTATAGTCTACAAGGTTCTTCAGCTACTAATGAGGTAATATGTCAATCC-----------CACCAATGGGCTCCTGTTACAAGTTGCCCGTTACTGAGTGCGGAGTCCTGCTTATATGTCGGGATACCTACCATCCATGTAACTATGCAGTGCGGTCAGCATC---CCGTCCTGGGGCACGTAGGCAGAGTAGGCCATCTCTTCCAGCATGGGTGGAGACAGCCTGGAGGGTGGGACTGCTGTGACCGGGGCAGAGGACGAGTGATTGGGACTGACGTGCTTCTTGTGGCGGGCTCTACAGTTCTGAAACCACACCTGTAGGGGAAAACAGCAAGGTGTCTCAGCCACTCATCAGCCCAGGAGGGCGTCACCCACTCAGCTGAGTGG--TAAAGAACACAGCTTCCAGCGCTCCTACCCCTGGAGCACAGAATAAACTTTTCTAGAAGTT-----------CGGGAGACAGGAGAGGAAT-GGTTTGGCCCA-----------------------------GAGTCATGCTTT---------CACTTCAGAGACAATAGCTCTCTGGTAACTTACTT------------------------------AAAAGGTGACTCA--TATTAAACTAGTGGTGGCCAGGGAGTGCACatggaag---------------------aggaagcagaggaggaagaggaaggacat-----gaagaagagg---------atgaggaagc---------------aggaggaggcagagatgaGGTGGAGAAGGTGGTGGTAGAAGAGGACGAAAAGAGtgcaggagca---------gagcagagaagaatcctggaggaggaa----aaagaggg----gagaaggggaggagacTGGGAGGGGGTGGA-----GGaggtggagagagggagga--------------------------------------------------------gggggagaggagagaag----------------------------------------aggagaggagagggaggag----------------------------------------------------------------------------------ggaggagag------aggggaggcaggagctcaaGGATTCCAGATAAGGACCCTTGGTTTTACTACTggtttcagggggaaaaaaaagaaagcagaaaaaaagctttttaatcaggactttaaacacacacacactcacctgaATATATTCTTAGAC-CCTGCTGAACTTATTTCAAATGCTTGTTCAAATGATTAAAATCCCTACTGGGAACATGCAGCTTTCTACAAGCCTCTTGATTCAGTCATTCCATTCACATCTTAACCTGCTGCGTTCAGTCTCTTTTAGTAAATACACAGACCATTCCCTAAGAAGCATGCCAATGTCAAGAGCTATAATAAGAA-AAACTAGTACCATTTAAGTAAAATCAAATACAAACACATCCAAGTGGTGAAAGACCCC-------------CATTGACCACCCCAATGTCCACTCTCTTGCAGAAATGACAGGAGTTCAGGACCAGCGAGTTTTGCACCCAACTCAGGGTACATGGGGCTGGACTGCCCAAGCGTCCCCTGTGTTTAACTTCTATGCCAGGGGACAAACT----------TCACCACATAGTGTTACTTGATTAA

a score=6603
s chr3           154316733 111 + 160039680 GGTTCTCACCTGTATGACACGTCTGCTTAAGCCTGTCCTTTCTGCCAGTTTCTGGAGGGTCTGTGCATCTGGGTTGTTGTCCTGAGCGAACTGTGCTTGCATAACCTGTGG
s HiC_scaffold_1 181847874 111 + 233722169 GATCcccacctggatgactctccgGCTGAGGCCCGTCATGTCCGCCAACTTCTGCAGAGTCTGTGCGTCGGGATTATTGTCCTGAGCAAACTGCGCCTGCATAACCTGCGG

a score=12930
s chr3           154316738 1968 + 160039680 TCACCTGTATGACACGTCTGCTTAAGCCTGTCCTTTCTGCCAGTTTCTGGAGGGTCTGTGCATCTGGGTTGTTGTCCTGAGCGAACTGTGCTTGCATAACCTGTGGTTGTTTTTAAAGACAGATGTCGGGAGCAAACAGTTAAA-------AGCTTGATCTTTTGCATTCTGATGGTAGAACAGATTAA--------------------------------------------------------------------GGCACACAAAGAAAAACGTGTTG----------------------------------------------------------------------------------------------------------------TGTATTTTGGTATTTGAAAATGAATACAGCGA-----ACACAAGTAAAAGAA-AGGCGTGCTTTGTAAATT--TACATGAACTCTTATTCTAAGATCTTTAAAAATTAACCGCCTGGAA----ACTCTGCCCCTCAGCTCTGCCATTAGAGACA--CTACCCTCT--CTCCACCCAGTCTCAGAACTCCCAAAACACACAGGAGCTGACTCTCCCACCCTTGG--CTTCCCA-TTTGTAAAATATCCCTGCACT--GGGACTCAACAAAAGACTCAAGTCCCACCATAGTTATCTCTAGCCTCTGTGGGTCTCAAC----AGCCTCAAGGGCTCTTACATTGttttttttttttttttttttttttGTTGTTGTTGATCTACAAACAGTGCTGCAGAGATGGATTACAGCATAGTGCAATGATGCCACTGCTGTGGGGTGGGGAGGGGAAAGGAAGGGGACGGTGGAGGGTGTTTGCTTCGCAGGAAGCAACCTCTTAAGATCTTAAAAAGGAGAGACATACTTTAGTCCATGCAACAAGACCTTAGCAGAGTCC--ATCGATTCAGAGGGGACATTCTGGAT--------------TGATACCATTATGCCAAGTGCTGTGACATATGTACATTCATATATGGTGGGG-----GTAGGGGGTCCTGATCTTAAGTTCTTAAAAGAAAAATATAGAAATGCCAGTCATCCTCTCTAATTAACAGTGATGGAAAG---------------AGGGAAATGAACCGTCGAG----------GTCAA-GGCTTTTGGATCCTGGGATGAGGGACTCATGAGAATCCAGTAATT-------TTGAATTTTATTATGTAAAGCCAGTCAGCTGAGGGGAATATGAGATAA-AGA-----------------TAATTAACTAAAAATAGGGCATTCAGTAGGCTGTGCTTGTCAGTGCAGTACCCACTTCCC--CACTGTGTTGGTC----------------CCTGCTGC--------CCTAAAT------------GGTGTG--------------------------------------------------AACTGGTGAGC-------------------ACCCACTTCCTCACCCTGCTGC------CCACCT------------------------------CCCCCAGGCAGTGTGAGCTT----------------------------------TGTCTTGGCCTGCTCCT--GCTGGCGCTGGCCGGCTTTCTGTCTCTTCACTTGTCACAAGGAGACCAACAGCTTACTTTGCAAAGT-CCCTCACTCTGGCTAGGGAAAAGCATCCTTTTGCATTGCATTACCCTCCTTAGTGGGTAGGGGGCGGTGCGGCTGCATTCTCTGCTTGCCTGTG--------TTGCCTGTGATGCAATGTACTCTT-------CAGTGGAACCTTGACAATATGAGGAAAGTCTCAAGAGCATGGAGAAAAAGT------------CCAGAAACATTTTGAGACTG-CAAATGACCCCCTCAGTTAAGATGCCACGGGTTAG-AACTCTTCTAGAATCAAGGGCTTCTAGCTTCCCATCTAAAACTGTATTGATAGATTCATTGTAAAAGGATTATAGACTTGTTCTTATTTTAAGACATTGGAAAA---------TGGACTCC----ATATCCCTTCTTTCTACCATTCTTTAATCCAAGGGGCTGCTTT--TCTATCCAGTTGTGCTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTGCTGACTTGGGGGTAACATCCCAAAGACAAATGGCA---AGTGAATTGATCATGT-------CTTTAATTTCCCAGGAAGATCAAGCAGAAGGGATATTTGGGGATTTGCTCCCAAG-TCATTACTGATTAGCTGGTTTAAAAAGA-----------AAAAGACC-----------------------TCTGGAAGTAAAAGTTTAATAATAGAACCAACATACATTTAGCAAAGA----TATCCATCAAGGAAGGAAATGGAACTTAAATCCACCCTGGCCATTAGGAACCAGAATTATTCTAAGGAAAATAGGGCACTTTGCTATTCTTTTAGCTAGTA
s HiC_scaffold_1 141305161 2334 + 233722169 TTACCTGTATCACACGTCTGCTCAAGCCTGTCCTTTCTGCCAGTTTCTGGAGCGTCTGTGCATCTGGGTTGTTGTCCTGAGCAAATTGTGCTTGCATAACCtgtgatttgtttaaaaaaaaaatgtgggctGTAAATCATTAAAAAGACACAGCTCAATCTTCTGCATTTTGAt-gtggaagaaacaaaagacacaTATAAGTGAATGTGACACAATAATGTCTCGATTCACGATCACTTCTGTTTGTGAATAATtcggttcacaaacagaagcatttggcaaaatttagcTTCCATTTGTAAACTCTGCCTCAAGAGAGGAACACAACCGTGGCCATCTTTGGTagaattgtggaatgaattaaattAATGAACCGAGGTACTACTACACTTGCATATTATTATTTGAAAACCATCATTGAGAAGTATATATAAGTGAAAAAGTAGGcaaattttgtgtatttatacACAGGCTGTTTGGTTgagatctttgaaaaataatccACTTCAATATGAATTCAACTCTCAACTATGCTGTTAGAAATAAgctccccttttctttctcccattcTTAGAACTCACAAATGAAATGTGTAATATGAATCCCATttataatttttcccattttgtcaAACTTCTCAGCTTTAAAAAACTTAATAAGATATGAAAACTGTATAATACTTATCTCCAACCTTTACTAGGCTTACCTACTAGGTTGAATGCCTGCAAAA-------------------------TAATTACTACTGATCTGCAAAGAG-------GACAGGGATTTCACCTAATGGTGATGACTCCCTCATTTCATTTTGATGA------------------------------TTCTGTGAATGAA-----TATCTGAGATCTTAAAAGGGGG--------CTCTGTCAATCCCCTGAGAATTCACTGGGGACTAAACAAGCTCACAGGCGAC---TTGGATGTCAGCCTGCAGCCTGTAACCACCATGCCAAAGGCTG------------------AGATGGTGATGCCAAAATAACTGTGCCTGTTCTtacttccctggaagaaagattcGGACATGCTAATAATTACCTAtcataaaagagaaagggaggagcacaaaaaaaggtaGGGAGAAGCACC--CGAGTAAATCACATGCCAACGGCTCGGCACCCCTCAGAAGAGGGAACCACTATGG--CAATAAGTGAGATACTTCAATTTTATCACTGAAAGTCAACCAACTGTGGGGAgtattagaaaacagaaatgctgtacttttttttggtttttttgagacagggtctcctgt--gcaattcaggttggccttgaactcattttgtagcacag-gctggtctcagactcgcaacgatcctcctgcctcaacctcccaaatattcaaattacaggtgtgcaataccacatctggctaaaaaaaaaaaaaaaaaaaaaaagaaaaaaagaaactgatgtaCTTTACAGAATGAGAGTGAAGCCTGGTGTCCCATACAATTGCACTTGGCCACATGAATGGATTGAGTATCCAACCTATTTAAAGACCTTAAGCAGGGCTGGCTTCTCTACCCTTCCCATCAGAAAAAAACTACCTtccttctctgctctgctctttatatGGCACTATC-----TTCTGCCACTGTAATTGTCACAGGGAG--CTACAGAGTGCGCTGGCAAGTGTACTCTCCATGGCAATGG----GTGTGCTGTTCCTTGACA-----------------CAGGGAATG-------CCCATTCTTTACCTCCCGGGAATCAAACCCTTCCCGCCCCGCAGTTTGGAGTTTGTAACACAGTGAAACC-TGACAATGTGAGGAAAATCT---GAGTGTGGAGAGAAAGTTAAGGATTGTTCCAGGAAGCTTTATGAGACTGACAAATTACATTTTCAG-TAAGATCTCGCTGATAAGTGACTCTTCCACAATTACATAATCCTGACTTCCAGTCT---GCTATGTGTATACATTCATAATGAAA-----ATAGACtt----ttggtttaaaaaatgaaaaaaaaaattgcctgaaCACCTATAatcttcctatttccttttcTACTGTA----AATGTGTTACATTAATGTCTCCTATGAAAATAGTGT-TGTTTATATGTAATTGAGCAT----------------ATAATATCCCcaagagaaaaaggaatgagaaatataattatgtttttgtattttagtttttcaaaaag-----tCTGTATGGATACTTGAAGATTTGCTTGTAAGATCATTACCAACaatctg--ttaaaaaaaatctgttaaagaAAAAACCCAGCATGCTTTTCACAAATGAGTTTCAGATTGACAAGTTTAATAATGGAACCGAGTTACATTTAATAAAGGAATTTCTCCATCAAGGAATGAATT-----TTAGATCAGCATGGATTATTTAAATTGGGA--TATTCTTTTGAAAAAGTAgtactcattaattctttttaatggta

a score=118230
s chr3           154319583 8730 + 160039680 [encoded data, 10015 characters]
s HiC_scaffold_1 141308221 9021 + 233722169 [encoded data, 10015 characters]

a score=11087
s chr3           154322238 253 + 160039680 ACCGTTCTCCACTTCTCTCTTCAGATTGTCCAGCATGCAGTCAAAGTGCACTCTACAGAGGACCTTCTCCTCCACCAAGGCGAACTCCTCTCCCGTGGACAGCTGCCTCTTGCAAGAAAAGCAGGCAAAGCAGGCCAGGTGATACACGTTGCCCTTGGCCCTGCGGACCCAGTCAGTCGAGTGGATGTGCCTGCCACAGCGGGAACAGCGGGTCCCATACCGTCTG-GACAC-AGGAAGGAGGCATGGTGAGGTA
s HiC_scaffold_1 181850851 255 + 233722169 ACCATTCTCCGCAGCTCTCTTGAGGTTCTCAATCATGGTGTCATAATGGATGCGGCACAGCACCTTCTCCTCCACCAAACCAAACTCTTCACCAGTAGACAGCTGGCGCTTGCAGGAGAAGCAGGCAAAGCAGGCAAGGTGATAGGCATTGCCACGTGCCCGTCGCACCCAATCACTGGCATAGATCTGTCGGCCACACCGGGCACACTTGGTCCCAAATCGGCTGTGACACAAGGGAACAGGTACAGGTTGGTA

a score=5677
s chr3           154324532 165 + 160039680 GCAATATACCTGAAGTAATCGAGTTTACAGAAAATGTCTTTATCCTTAATGTAGCAGCTCGTGTGCCTTCCCAGGGACGTTCTGCAGACACTGCAGGAGAGACAGCGGACATGCCAGCATAAGTCATTCACCTGCAAGGGGAGAGGGTGAGGGTGAGCAGCCCGG
s HiC_scaffold_1 181859399 164 + 233722169 GCAGCCTACCTGAAGTAGTCCATCTTGCAGAAGATTTCCTTGTTCTTGATGTAGCAGCTGTTCTGCTGCCTCAGCGACGTGCGACACACGGAGCACTCAAGGCATCGCACGTGCCAGATGAGGTTGTTGACCTG-GGGAGGAGGGGGAAATGGGGGTCAGCTTAG

a score=128917
s chr3           154328754 7292 + 160039680 [encoded data, 8105 characters]
s HiC_scaffold_1 141317747 7245 + 233722169 [encoded data, 8105 characters]

a score=62381
s chr3           154339849 2446 + 160039680 GCAGGTGGCTC----------AGGAGGAGTCTCTAAGGA-TGTGGGCCTGGCCATCCTTCTGGAGTGGCTCAATCTCATTCTCTCGGGAGAAATTCCCTGGGGCTTGCCTATCTGGCCTTAGTCCCCTTGCCAATCACAGCTGCTTGGCCTTTGGTACTTTTTAAATAAAGCCGTTCAATTCTGGGGCGAACGCTTGTAACTTGATTAGACACGCGTGTACAGTC---CTAAAGGGGGCGTGACGTGTGTGTGTGCGCGCACGCGCGTGT---------------------------TTCTTCTAGGCTAATGAGACTATTGTTTTGTTCCAAAGATGGAGAGGGTCCTCAGGGTGCTGAATTTCTTAAGCTAAATCAAGAATTTATTTTCCCTTCGTGGAATTATCTTTTTAC---TAGATTGAAAAACCACGCTCTTAATTTTGGTCACCTCGAGAGAAGTTTAGTAATAACGT-ATGAGCAGAAGCCAAAGGGAAA-ATTTCTGTGC--------GCCAC--CTTTAAT---GCATAGAAAGCTTCAGTGGAGCCCGGGGTTTGACAGGG-CACTC-TGTGTTCATTGCTTGCTTTTCT----------------GGCTGGTGAGGGTGTCGTTTCTAATGCATATC-TCTGTTAGTCGTTTCTGCTTGGTACGGTGGTCATTTGGAGC----ACATCTGTTCCCGATCGCTTTCCTCTGTCGAGCACACACTATCGTGTTAGCAAGATTTTGCACCATCTGTTTAAAAACATTCTCGCTGGTGCTATTTGATGCCCGGTTGAACTTTCGCCAAACTTC---ATTTTATACTGTTCCCTCGGTCCAGATCATATAAAATACACTTTAATGAAATTATGCTTTTATACTTGCTGACAGGCATCAGAAACACATTTGCCCAGGTCAACAGCAGTTGTGCTAAGTGTTACAGAGGAGGAACAGCACTGAAACATTACAGTAGTAAAGATGCTG---GAGAGAGAGGTTTAGAAACAAAGCTATAAAATTAAGATGAAATCATCACCCAACAAAACAGA------GCACACATTTGGGGGGGGAG----GGGGTTGGATATTAGGGGACAGACTA----TCTGGGCCTTTATTGGGAGCTAGTGC---------------ATATTCCTGACA----------------------------------ATTAATGT-------------------ATTTCTTCATTATAAGCATTAAACTTAGGAATTTTATTTTTTGACATTGTGCCAAGGCTGTAATAACTGGTTCACAGAATAATAAAGTACAATGGTCCTGTAATGTGATTATGTTAAATCTATTTTGAATGCAATGTAGAGGCTATTGATCTTATCTAGCCAGGTATTTATTTTTATCTTGAGGTCTCTCACAAAGGTT------------------TGAGCA--------------------------CTTCAGCGCAGACCTA-ACGCGACATTTCAAAACCTATTCAGACATGTATTGTTTGATAGCTGAGTATTATGTC-TGGGAATGGAATAATTGTGAGGCTGTATTTGGAAGGAGAATGTGGATAGAG--------------------CTTTGCTAGAATGCTGCAGTCCTGTGCTCTCTTTAA----CTGGTTTGTCTACACCAAGGT-----AAAGCTTTAAAATGCTAAGTTTTGATGGGGGTCTCAGTTATGACTC---AGACAGCAGTCTTGAGAATCAAATGAGTAAGCTTTTGACCCTGGTGTCTGATGATCAGCGTTCTGACAG----AAACGTTTCCTTTGATGGACATCTGCTGAGA-------------------------GCAGGTTGCTTGGCTCCCTTGTTACCTGGACAACAGGCAGCTGTGACTTAAAGATAT--CTGCAAAATACCAACTCAGCATGT---AAACTCCCTCACTTTGTTTACTCAAGAAAATGCTTTTTTG-CCTTGATGTACATAATTTCTAAAGTACAATGTATCTATGATAATGTAGGTCACTGGTATTATTTATAGAAGGCATATGGAGTTGAATACATTGTTAATGTGAGATGGATCTGGTTACAAAAGGAAAGAAGCCTTATAACATCCCTGCCTATGT-GTACTTTTAAAAATTATTAATCAAGATCTCTATTTTCACTAAGGAGTTAGTTTGGATGTGTTGAAATGTAACTTACAGATTTTTTTTTTTTTTGGTAAAATAGCCAATGTTAGTAAAATGCAAATCCTACGAATCTTCACATGTCTGGTTCCAATTAATCTGCTTAGACTATTTAATGGATAAAATAACAAACCTGATTTAGCCAATCTGGAGTTCTGCACCAATTTTCCATGGGCCTCTTTAAGGTTTAATGCCTTTTCTTACACACG-TTAATTCATGG-------CTTAGAGGACCAGGATTGGAAAAGTAAATAGC------TATTTTCATTTTATCTCAAAACAT----CTTTGGCCTTTACAGCAGCTGGAGAGGGAGTCCAGAGACAACTATCGATTACTACTGAGAGAGTGAAGGCGAGCTATGCACATATTTGTATTTGGGTTCAATTCATTGGGTTTG-TttgagtgcctacaaggtaccaggtggtccagatacaagagtaatacatgggtggtcttgattctctgaaaattccctgtccagagggagcccaggcaaagacataattTGTTGATACTTTCAATTCT
s HiC_scaffold_1 141328293 2615 + 233722169 GCAGGTGGCTCCCTGTCCTGCGCGAGGATCCTCGGAGGGCTTTGGGTTTGGCTGTCACT---GAG------AAACTAGGCCTCCCGGA------------GGGCCTGGCTG---GGCCTTAG-CTATGTGCCA----------------CTTTGGTACTTGT--GATACAGTTGTGCAATGCTTGGGTGAAGCCATGCAAC--GATTA-ACACGTGCATCAAGTTAGTCTAAAaggaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcatgcacaccCATATTCTTTTGGGCTGATGAGA----TATTTCCATCTTAA-------ACGATTCTAGGTTCCCTGAAATTCTTATATTAAATCAAAGACTTATTTCCCTTGGATGtgattagtttttaaaacatggaTT--AACATTACCTTTTTAATTCTCACTACCTTGATAAAGATTATATACCAAATTCATAAGGGGAAGCTAAAGGGAAATATGTCTATGCTTTTCCAGGCTATGACTTtagcctggaaaaaaaaaaatcagtagcatttcttaTTTGACAAGGACATGCgtttgttcagcatttctttttctcctctttttttctctttcccttccaggGCATCATTTCTAATGTACATCCTatgtttattgtttctgtttggtACTGTGGTCATCTGGAGCTCACACATCTGTTTCTGATCGTCTTCCTGTGTTGAGCACGCACTATTGTGTTAGTAAGATTTTACACCATCTGTTTAAGAAAATTCCTGCCAGTGCTATTTGATGCCCAGTTGAACTTTCGCCAAACTTCTTCATCTTGTAATGTTCTCTGGGTCCTGAGCATATATAATACACTTTAATGAAATTACGCTTTTGTACTTGTTGACAGACATCAGAAACACATTGGCCCAGGTCACCAGCAGTTGAGCTAAGTGTTGTGTGGGAAGAAC--------AATATTAAAATAGTAAAgatgttgaaaaagaaaaatatttggaaacagaacCATTAAATTAGAATCAAATAATCACCCAAATAAACAACTGCtctgcatatatacacacatggaATTTTTGGCCTGGATCTTGGGAGCTAGGGTATAGTTCTGATGATTTCTTAATTATAAATACTAAACATAGGACTTTATAGTTTTGACATGACTCTATGAGTGTAATAGctaatttgaaaaatactgatgTAGAATAGCCTTGTAAGGTGAtttcttaattataaatattagacATAGGAATTTATAATTTTGACATGATTCTATGAGTATAATAACTAATTT---GAAAAATGATGTAGAATAGCATTGAAACATGGTTGTATTG----tgtattaaatgtaaaata---attgtggAGCCTAtgtaaaaaagtaatt-ttttaatcttGTAGTCACTCAGAAAGGCTTTCCACTGTTATCCAATGTTAGTACAGTAAGTGTCActcctttctgtctcctttaAAGCAGAGCTATTTATGACATTTC-AAGCATAT-----CATATATTATTTGCTGGCTAAGTATTTTTCAGTAACAGTGGATTATCTAGAAGGCTGTAATTgtcttgaaaatgtaaatattgacAGTATGTGTTCAAATATCCTTTTTTAAAGTGCAGCA---CTTTGCTTGATACAAGGATCTATTTTGTTTACACCCAATTTGtccaaagctttaaaaatatgattttcca---atattttagtTATAGGACAAGAAATATCAACCTTAACACTTGGGTAAGTAAGCTGCTGACATTCACTACTGCAAATCAGCATTCTTCAAGTTCAAAAAGTTtccttttattcatattttcccaAAAACAAATGATCACATTCTTCCCTAGACAGACTGCTTTTATTGCTCTTTAATTACATA--------CTATGA-TTGAAGATATGGCCATTAAATAATACTTCAGAATATATCAAACGTTCT--TTTTGTTGATGCaggaaaacaaatttctgtttttaatgtatttaatttccaaa-taaaacatATCCATTGTGAAGTGGGTAATTGACATTAGGTATACAAGGCATTGGAAACTAAATACCTTGTTACTGTGAGATAAATCtattataaaaatgtaacaaGTCTT-----ATTTTTGCctccataaaaatttaaaaaataatttatcacgaactatattttctttaaactgCTAATCTGAATATGTTGAAATATAACTCATAAGATTC--------------AAGTAATTGATGTTACTAAAAAGCAAACCTTATGAATCTTCACATGCCTGGTTCCAATTAATCTGCTTAAACTATTTAATGggtaaaaaaacaaacctgattTCGTCAATCTGGAGTTCTGCACCAATTTTCTGTGTGCCTCTTTAAGGTCTAATGCCTTTGCCTACACATATTTAGTCCATGGAGGTGGTCTTAAAAAACCCAGAGTGGCAGGATAAATAACTAGATGTAGTTtcctgacaaaacaaaacacagtattttTGCAGTTTCATCAGTTAGAAAAAGTAGCCTCTGAGGAGTTTCAATGGTTACT-----------AGAGAACTCTGTGCATGCTTTT-TGTGGGTTCAACTCATCCAGCATGTTTTGGGTTCCTTC-TTATGCCGGGCATTGGGGATACAAGAGTAAGACATGGGTGATCCTTTCTCTTAGAAAAGTCCCCATCCAAGGAGGAGACTGATAAAAGTGAAAGCAGCTCATCTTATCAGTTCT

a score=7793
s chr3           154345881 280 + 160039680 TCTTCAACGTTTGGAAAAGAAAGAGCTATGGACGTCATCACCCAACGCAGGATGGTTCCACAGACTCATCAAAATGACAAAGATTGAATGCTTTCTTCTAAACTCTTGTAATTCTGAAGTTTTCATTTTTTATAGTTGT--TTAATTACTGCTGTTGATAACTGGCATTTTGCATCCAATCAAAACATTTATAAATTTCAAACAAGCTTTCTTTACTATTCCACATGGCCTTTGACTTCAAACGTGCAATTTAAATGCTGTCTTTTCCTTGAGCATTCTCAC
s HiC_scaffold_1 141332579 261 + 233722169 TTTTCAAAGCTTGCAAAA-------CCATGACACTCATTTCCCAAAGCAAAACTAATCCATGAAATTACTGAAATtgcaatg------tgttttgtttttaaattttacaattcTG-------CATTTTGCAAACCTGTGACTAATTGCTGCTGTTAATAATCCACTTACTCCAACCGATCCAAACCTTTGCAGGCT-CAAACAGGACTTCTTTATCCTTCCACTTCTCCATCGACTTTTAAAGCCTACTTTAAGTGCTGCCTTTTCCATGAGCATTTTTAC

a score=36260
s chr3           154361792 2202 + 160039680 AACCTGTGTTCATTCATGGGCTCAAATCT-GTGTAAGTAGAGTAA-------TTCTTGTTTTAGATCATGGTAAGTAGCAACGTGTTTGGAACAAATGAGGCGTTCAAGAA------AATCCTTAAGATATAGAGTATTTCTAGATTGGAGTGTTCTGTAGTTAATGAAATTATTTTCC--------------ATTGAGAGAATTCTGACAT----AACTTAAAAGCATGCCTGGG-TAAAGTATGATATCCCT-GTATGCAGGATAGTAAGTCTGAGGGGA-GATAATGAGAATAGGGTGACTTATGTCAAGATGGTCACAATAGGGAGGTT------TAATCGACTCTGCATTTTCT-AATTCTTTTACAGTGCCTACCTCATTACTTTCATAATTGGAAAATCAAAGACACTGGATTTTTTTGGTAAACAGTATTTCCAAAGGTTCCACCTTTTTTTTTTGAAAAAGT--GGTCCTCTTAAATGCAATAACttaaataatataatatatatttCTTATGAGTTAATAATCTCAAGAGTAATAA-----------CAGCTTTCCA-TTTCAAGTCAGAATTTTATCGGTAGATGTTGCTTTTC-CTCAGAACTTAAATCAGGGG-----TTTTATAGAAGCATATAATCTTGTTAGTAAAAAGTAATTGATGACTGTTACCAAGGAGAC-CCTGGATCCCATTGTTCAATAACATACTCACAGGGTAGCGTGCTGAATCAAGAAGCCAAGTAAACGAGGCTGCCGCGTGGCTCCATGCTTCTCATCACGGCAAACTTC-----------AGATGTCAGGTGAACTCAACATTTATAACTACCACAGACCTCTCTG-----AATTTGAAGGAGAGTTTGCAGAATTGGGCTGCAGT-----------------CTCCCTCCGGCACCTGGAAGGACACCCACAGCAAGGAGGTACCTGCAGGGGCGTCAGG---GCCTTCAG--AAGCTCAGTC-----------------AAGCCCTTTGGTTTTTAAACTTGCTTG------GTATGAGATCCACCCTGGAAAACGGGGACACAGACTCTCAAA---ACTAGTTACTGTAGGTTGTAGAT-TCCTTAGCAAAGATCAGTTCTGACTCAAATAACCCATAA-------GGGGTGCCTGGAGAGACCGGT------------GTCT------TTGAGCTGTGTGTTAGCAAAGGCTTTATCACAAACTGTCAGGC-TCTTCCATGGCTGTAAGCA---GTAG----GGGATAAGCTGGCTCATGAATTTGGAGGGGTCAATATGGAGAACTATGACACTCTTGCTTTTAAATAGGTGACTAAAAGGGAGAGTTAGGGCAAAGCAGAAAATAAAAGCGTTTGAAACATACAATGACATTTTTTGTTCTCATGCTGAAAA-CCCTTCTTAAACAAAGACATGCATA------CAGGGTAATCCCAA---ATCTCCCAGTTAGCAAGACTTATCAGCTGAAGATCACTAGAATTAAGTTCCTCATTTCTTTTTCCAT-----------------------------------CGTGTATTCATAT-----------------------AGCTTAGCTAGGCAGGA---GTGCCTTCCTGCCTCACCTGATGCCCATGTCACAGGTTAAAAAAATGCTCAAGTGGGCGTGCTCATCTTTGTCCTTTTGAATGGAATAGCTCTATTCCTTCTGGAAGGGGAATAGTTTCAGATTGTGGAGGC-CCACGAGTTCATCGTTTATAACTGTCTAAAGGGGGACATGCACAGAAGATTTATTTATGGTTGTGTAACTCAAAGTTTTCCCC------AAATTTGGTTTGGCTACAAAAGAGTAGCCCAAGTCAATTAAAAAAAAAAACCAAACCCATCCACGACCCCTTCTCCTCCAACCCCCCACAACCTTCCCAAAAC-------------CCCCTCAACCAATTTTGTGCATATGATATTTCCCTTGAGGTCTTAATCGGTTTAGTCTGTAGGATTTCCTCTTTGGTGACATTATCAGAAGAAATTACCCTGTTTCATTACCTACGGTCAATGAGGTCTGACGGGTTTTCCTTCTTGCCGGTCTGC-AATGAGTGGAGGTCGTGAGCAGCTCTCTGAAACAGGAAGGTGTTGTCTAGACGTGGCCCTTTGAAGTTTCCTTCACTTCCATCTTCAGCTGAC--TGAAATTTCTTGTTGGGG---GGTCACCTACGTTAAATCCTCAGAGTCAGTGGATGTTGGTGGACTGTT-TAACTATTTACTGGGCAGCCCTGTCGTGGAAGAAAAC---------CTGTGGAATTTGCCTGGAACTGATTCGCTGTCAGTCCTGGGTGGCCCTTACCCAGGCAGTTATGTTAGGTTAGAGAGAAAGCAGAAGTGggggagaaactggggagaagccggggagaagctgggaag
s HiC_scaffold_1 141343124 2336 + 233722169 AATTTGTGCTTGTT----ACCTCAAATTTTGTATAAAAAGTACaacttcattttgttgtttt---tcatagCAAGT-------TATCTGGAGCAAGGACCCTAATCCAGAGGAGATGAATAATTAAGATACCAAATATTTCTGAGCTGGCGTGTTATGTAGctattaaagttatttttctgaagaaatttACAATTGGGGTAATTCTGAGATGATTAAATTGAAAACATGCCAAAAATAAAGTAGGTTCTCTCTTGCATGTGAAATTGTACAtggaaagagaagacagaaaaaatagaatgaaatgtgTCAAAATGTTGgtgatttctattttcttccttaaatgttttcatatttcctCAAAATTTTCACAGTACCCATCTATTTACTTTTATAATCAGAGAAACATAAAGGATAAAATCTTT-AATAAGCAAGTTTTCTAAAGATTTC-------TCTTGGGAAAAAATTTATTAATTGTAAAGATAATAACTTGGATAA-ATACTACATGT--ACTACAATTTAATAACTTGAAAGATACTAATTTAAAAGTGTCAGCTTTTAAGTTTCAGATCAGA-CTTTACCAGCGGAGATTACTTTTCTCACTTATTCTAAATTGGGAAAGTTTTCTTGTAGAAGTGTTTCATTTCATTAACAATAAATAATTGATGATTGATGGAATTTTGATACCTGAGTCACATCGTTC----------------GGTAGCAGGAAGA--CAAGAAAGCAAACAGCC-AGGCTGTGGAATCATTTCATGCTTCTCATGAAGTGAGAGTCCCAGACTATGATGGAAGACTGTTTAA---AATAGTCGTGCCTATTG------TGTCTGGGTCTATTTTGCAGGAAAGTGTGTAGATGCAGGTTTTGGTGTGGAGGGGAAAGGGGGCTCTTTACTGTCCCAGGGTGAG--------GCGTGGAGATATC---AAGAGTCCCAAGTAGGCCTAGAGTCAAACTAAGCCTAGAAACACAAGGGGCACAGCCC----ATGTTCCAACA-GCATAACGAGTGTGTGTGACCCAGC-TGGGAAGTAGATGGACAGGCCCACTGATGAGCTA--CACCGTGGGCTGTACACATTCTTTACCAAGAACAGAATTGCC-------ACCCATCGAACTGCTGGGATGGCTAGCATGATCAGTCTTCTGCAGCCTGTCTCATTCATACAGCTGCAAATCACTAGATTCCTTATCTTGGAAGGTCAAAAACCCTCCATTGAT-TAGACATACGTACTTCCAGAGTAAGACAGCCCACCAAC--GCAGTGGTCCTTATAAAGGACGGAGACACTTGTGCCTTTAAAGTGGC-AGTGAAAGCAAACTGTaagcaaagggagaaaaaaaaataattgaagacacaaaacaaagttt---gtcttcattttaaaaaatcctttccaaataaaaatataaatggagtCCTAGCATAAGCACAAGACATTACTCGCATATGACAGCTTAACA--TGAAAATTACTAGGATTAAACTCATTTTTTCTTTAGTCACACTGTTCATAGATGAATGAATGTGTGTTATAAACATGTGTGTTCATACTAAATACATATTCGCACAAAATCAGGCTAACTAATCACAAACTGTATTTTCCTGCCTCA---GAAAC--ATACAGTAAGATATAAAA--TCTCATGTTACCTGaatcaacttttttcttttaaa-aaaatacct-tgcTACTTTTGAAAGCA-CCTGGTTTCTGATTGTGGGGAAGCCAAGATTTGAGAGTTCATAAATATCT---------TGTAAAGAAAAGACATATCTATTATTACATAtcacaattttttctctttctttacattttctttttctttata-gaaaagcctaaatcaatttaaaaa------tctcCCCATCCAGAACTAATCCTCC---------CCACGACCTTCCCAAAGCGGGGGGGAAAAAACCCAACAACCAATTTTGTTCACATGATATTTCCCTGGAGGTCTTAATCGGTTTAGTCTGTAGGATTTCCTTTTTGGTGACATTATCAGAAGAAATTACCCTCTATCATTACCTATGGTCAATGAACTTTGACGGGCTCTCCTTCT--CCTGTCTGCTTCTGAGGAAAGCTTTCAGGCAGTTCCCTGAGACAGGAAGGTGTCGTCTAGACGCCACCCTTTGAAGTCTCTTTGGCTTCCATCTTCAGCTCACCGTGTGCCTTCATTTTGGGGGGAGGTCATCTGTCTGAGGCACTCAGCGGCCGCTGATGATGCTTGGTTATTATAAACATTTACTGTACCGCTTTATTCCAGAGGAGAAATCAGGCAGGCAATGGAATTCGCCTGGAATTCATTCGGTGTCAGTCTTGGGTGGCCGTACCTCAGATTGTGGCTTCAGGCCAGTAACAAAGAC------AGGGAGAAGCTGGGATGAGGACCTT--GAAATTGGGAAG

a score=19650
s chr3           154367403 637 + 160039680 acacacacacacacacacacacacacacacacacacacacGA-----------ATCTTAACCACTCATGTGATGTCACCTAGCTTCGCAGCATTCTGAGCCTGGAGGAAGTGCTCTTTGTAAAACCCATGGCTTCATCTGGTAGTAATTTGTAATTTACCATGTTTTGGGCTCACAGCCAGGTCAGCTATTGCCAAG--AGAAGGCAGCCGGGAATACAACTATTATCAAGAGAGGATTTGG-AATGTACTGAATGAAGCAAACTGAGACAAACTAAAACAAAATCTAGGGAGTGGTGGACTCCCCTAAAAGTTATCTGCAT-----CTACAGAAGGAAGATGG--------------------------CCCAGGAGATCTAGCTGAGCCCCAGCTCT----GCCTGGGGCATAGCAAGTATC-------------------AGTCGGTAGGCCTA-TTAATTAGCT---------GGAGTAGATTTCCTCAAATATTTTAGGCAATGGGATTTCTGACTGGGAGATCTGCTGGTGCTGGTGGAGTTAGTTCTTCCCCATGTTTTAGCAGTTTGGGATGTAGTCTCTCATAAGCTCATCCCATGGACGCATT---CTTCAGAC----TCAACACAACACATAAAGCTGTAACAAAAAGCATTT----AAGATCTTATGTAGACCTGATAA---GAAGTTAAAGCATTT-AACTATGAGATGATAATTTA
s HiC_scaffold_1 141347668 709 + 233722169 acacacacacacacacacacacacacacacacacacacacgatctcCCTGTGAGTCTGAATCCCTTCAATGATTTCACTGGACCTCAAAGTATTCTGAGCCTGGAGGAAATACTCTACGTAAA-CTTGTAGCTTCATCTGGTAGTGATTTGTCACTTACCATGTTTTGGGCTGATGGCCAGGTCATTTTTTGCCGAGACAGCAGACAG--GGGAATAAAATTATTATCGAGAATAGACTTGGAAATGTACTCAATGAAGCAAACTGAGACAAATGCAAACAAAATCTAGGGCATAATGGATTCCC--AAAAAATAACTTAATGGgggttagaaaaagaagaggatctAATTCCTCCAGTTTAAATTTGCTCCCATGATCCCTCCCCATGCCCCAGTCCTTGAAATATCAGGTATATGAAACATCTCTTTCATATAAAGACTAATGTCTTTAAATCTATTTAATTAATTGGACAAGTAGGAATAGATTTCCTCTAACATTTAGCTCAACTGATTTTATGACCTGGAAATCCACTCATG----------TAGTTACTCA------TTTAGTagttttaagtgtaatttctagcaGTTTTATCTCTTGAGCTCGTTATGCCTTAGACTTATTCAATAAAGTGCATCTGCCTGTAgtacaaagaattttaagaaaaagacatCTAAATCTAATAAATCAAGGACAGAGCATTTCAAGTGTTTGAtgatcatata

a score=17924
s chr3           154376230 716 + 160039680 TATTTTGTGGGTTGTCAGCCATTAATTTTTTGGGGGGGGGTGTTAATAGGCTATGAGAAATGATTTGGGAGGATGATATGTTAAATGAGAAACATCACAAGAACA--CATATATTC-AGATTTCCAAACCCACATGGATAT-----GGGGAAATGTCTTGCTTTGGGACGACCCAGAA-TGACGTGG-CAAAGATGGGGAAATATCCTGGATTCCCAGGGCACTTTATCTTCTTGTCACCAATAGCCAAGATATGCTCAAATACTTTTTTATA-TATCTTCCCAAAGCGACTATATATTTGCATTGTTTCAAAATATAAATTACTATCGCTGGAAAGTTTAGAAAGTTGTTGGGACCTGGGCCAAG-GAGGGTGTACCCCAGGGATAACAATAGCAAGGCATGTTTTACTTTAAAAAGATAAGGAGAGATTAGAGTTTCCTTGTACTGCTCTGTATTAGTGTGGAGACCAAAAGA--GAAAAATAACTGATAAAT-------TAAATTAGCAGGAAAATGCCCCATTCAGTAATGTAGCTTGCCAAATGGATACTGATATACATGGAAGATTAGTGTTTTTAGGTGTTGGGGTTAGGGTTGAGGTTTACCAGGAGGGAAAAGGATGACAAGGGGAGAGAGAAACCAAGGGATAGGCTGCAAACAGCAGAGATGGAGCGAAGAAA------------CAATACTGACAAGACGCATTCCATCCCTAAATGAAGGTCTTCACGGCAAAGCT
s HiC_scaffold_1 141354910 719 + 233722169 TATTTTGTAGACTATGGGCTGTGAAATTGATGGAGAGG--TGCTAATAGGTTATGATCAACGATTTGAGACGATGCTA-gtgagagaaaaaatatttacagagcgGCCACATATCCTAGAACTCCA--CCCA---GGATGTCTTAGAGAAAAATGCCACTCTTGGGGACCTCCTGGAAGTATCATAGACCAGGATGAAGAAAAGTTCACAAATCTCTGTACACTTG--TATTTTGCCACAAGCAGCAAAGATACAGTCAGAGAattttttttgctctcttctaaaaatgaagatgtatttgtattgttTCAAATGCATAATTTTCATCATTGAAAA--TTGAGAAGGTGGTGGGATTTGGACCATGTGTTTGTGTACAT--------GTGATAAACAGACATggtgtactttaaaaaaataatgagagaTAAAAGTTTTGTCATATTTCCCCATCATAGCACAGAGATTTAGGGACAGAAGAAGAGCTGATAAGTGATGTtttaaatcaatggaaaaatgcCTGATTCAGTAATCTACCTTGCCAAATGGAGGCTGATATACAGAGAAGATTTATGCTTTTA------GGGGTTAGGGTTGAG---TGGGAGTGGGAGAAAGGATGTGAAAGGGGAACCCTAACCAACAACT-GGCTGCAGATCGTTAGGAGTGTgccaagaaagagagacagagccaATATCTGGAAGATTCATTCCAAACTAAAATAAGTATCTCCACCGCTTAGtt

a score=25078
s chr3           154380894 1256 + 160039680 aaaaagaaGTTTAGCAGATGTAGTTCCAGCTGCCTTTCTATCCAGGAAGTTTTAAGGACTTGGAAAC---------CTCCACATTGT-GGATGTAATGTTGCTGTAAGTTTGTTTATTATGCTGACTCTCTGGACCGTTCCATTATTTATTATTCTCTGCTTTATTTAGAAGGGTTTAACCTGTGTATAGTTCAGCTGTACTCTTTGTT-----AGTAATTACAGAATTTTCTTCGGTTTATAAACATGAACCAAGGAG---GGGCAGGGCAGTGAAAAAATTTGATGTTTAAAAACCCAGGTTTAAGTCTCCGGCTAGTAAGTGAGTTAGAAGAGACAGCTTTCAGGGGGAAA-----TGCCTTGTTTCTTCTCCTCT---GAATGCTCAACACTATGACTTTCAAAGTCCTAATACTCTCTGTTACTAGCTTCTTGTTTCTTTGTTTTTTTGTTTTTGTTTTTTGTTTTCCTTGCAAAGAGAAACTGAGTTAAGAATAAAACAAAAACCATCACATTTTTCTTCTTAGACT----CAGAGGTT------TGAG-CGGGAACACAAATCTAAATGAAGGGCACAGTCACATGAAGGGGA-AAGAGGAATTGGGTATTCCTTCTGCTTCAAGCACATGCATGGCTGGAAGCGTCTAT-----GCTAACA-GAGATAGCTCTAGCTGTTC-CTGTATTCACCCAT-GACAGGAC----GGATCTCCACGGAACCGTCTAATATAACA------------------CAATACATA----------------------------------------------AAAGATAGAGAGTAAAGGGTGGTGGCTGGACTGC----CCGGCCTGCTTTGCAGCTGGTGAACCGGGAAGCACTGTGAGAGTTTGGCTTCCCCTTCTTTTTATTTGAT-------------------TCTCTG------TCTTGCCTTGCCTGTAGGCCTGGAGAGGCAATCAAGGCTGAACAATTGGTGCCTTCTCATCTCAAGTGAGCAATTTGCATTTCTGAGGATCTCCAGACAGGCTTGGGCtttttttttttttttttttttttttttttttAATTTACTGAGGCATCTGCAGATTCCAGGAATGTCCCTTCTAGGAATTCACCTCTTCTTTA-TGGGGAGGGAGACTG--TACCTTGCATACTCCCAAGAAACCCATGGCACCCAAGCTTGCATTAAGTAAT--TTCTCATT-------CTCTGTTATTACCCCTGATTTCA-----TATGCTGTT-----GTTATCTGACTATTTGTCTGGATGTTTTCCTTGAGAC-----AGACAGGC------AGGGT-------GGAGAGTGGGAAACCCGCCTCTGATCTGCTCTGTGGGGTCAAGGCCAATTATTTAAAAAAATAATGtatgtttgtttttaaatt
s HiC_scaffold_1 141358243 1375 + 233722169 AAGTAGAAAGTTAGCTTTTGCTTCCTAAGTTCTGTTTCCACTGATGAAGTTTAAAATACTTGGAAATGGGAGACATCTCC-TATTGTCGGCCGTGGTGTTcctcttcatgtgtttattatgCTAACTCCCTTGCCGattctattatttattattctcAACTTTATTTAGAATGGCTTAACCTGTGTATAGTTTAGCTGTGTTCTTTGTTTGTATAATAATTatagatttttcttctgtttatagaaaagaa--aaggagatggGGAAAAGGGTAGAAAAAAGTTTCAATTTAAATaccatgtctttatttttcagctAGCAAATAGGTTAGAGGAACAttattttagggggaaaaaaggcactttgtttattttcttcccaaGGATTCCTTATGCCCTAAACTCAGAAGCTttaatatccttttttaaaaaatcact------------------------------cttTTCTTGCAAAGAGAAATCGAgataggaataaaataaaaatcagcatatTTTATtctacagaacagaacagaatttgCACAATAAGATAGGAACACACATCTCAATGGAAGTTTTCTCTAAATGAAGGCAACAATTAAAAGCTAGTATTTCTCCTGTTGCT-GCACGTTTGCTCTCGGGACAGACTGTCTTGTGTTAATAAGGGGTACCACTAACTTCTCACGGCACGTATCCATTGACAGTGCTTTCGGAT-GCCACAGGACAAAATGGTACAACGATATGTATTCAGATTCATCAATGCCTATGAGAAAATCATAAGCAACAAAAAGCAACAGAGACAGTGAAGTCACAAGGATTGAAAACTATGAATGGTCTCTGCTCTGTAATGTCTGCTTGCTTTGCAGATGAGGAAT--GAAAACCCTGTTGGAGTATGGCTTCTATTCTCCTCTATGTGTTACTTACTTAGACtcctttttccttgaaggatTTTTTCCTTGCCTGTAGAACCACAGGAGCAATCAAGGCTGAACAATTGGGGCCTTCTTGTTTCAAGAggctaatttgcatttctgaggATCTCCTGACTGAATTAAACACCTTT---------------------------CTAGCCTAGGCTTCTGTGGCTCAAAGGAATGTTCCTTCTAGAAATTTACCTTACTTTTAGCAGGGTAGGATATTGCCTGGCTTTGACACTCCTCAGAGACAGGAGACACCCACGTTTACACAAAgtaattgttttcatttgctcAGTGCTTTGGTCACTCATACATTCAGAGTCCATGATCTTTCCTGGTTTTCACATTGTTTATATGAATGTATTACCTGAGATTAAGGAACCAGGCTACACAAgagctggaaaaggaaatttgcaAATATGTCTTTAATATGTTCTGACAATTTGGGATCAAGCACTTTGTATCATTCTGCatgtcagtttcttcatt

a score=34547
s chr3           154385230 963 + 160039680 TAATCTTTTCATTTTAATGATTAAAGTTGCTTCAAACTTTTGAGTCATGTCATGGCACATGGACTGATTCCCCTGAATCACTGAAAGTGCATATGGATAAGAACCTAGACTGGTAAAAAAGTTCTTATTTATAAAACTATCT---AAAATATTAAAATATCGCAAACAAGATGTTCACCTATTTTCTGGGTCAGAAAGTCAAAATTTAGGATTCATTAA--GTCAGAAG--AATTGATTGAGAAAATGTTCCTAATTTTTAAAAAAGGAAACTTCCAGGTTTTGTTGAGTCTATAGAACCTAATTGTTTTTAGAGACAAAAGGCAAACTTTATTTAGAACATTAAACACACAAA-------AAAGACCTGTCCACACCCTGTTTACTCAACTTAAATTGTCGCCCACGAATTCA--CAAAAGCCCCCCCCCCCAGCCATCACTGTTCTCTCTAGTGAACACTA------GCATCCTTGTGAAAAATTGGAAAACAAGAAACAGCAT--TTAGAATAAACC-AGAGAAGATTCTGGAATAGATAAGGCAGAATGTTTCATT--------TTCATTTTTTAATGTAAGGCTGCCCGAACTGACTGGCAGCATCATTCCCCAAACGGTGGCCCC-TAATTATTTCATCATGCAG-GGGAAATCCTGGTAGGTCAAATATAAACAGCCTGAGGCAGGAACCTCTTCATCGGATACAGCCTGACATCTGACATCTGCAGGGCCTCCTGCAAGCCTGCCACAATTAACCGGGAGGCGCAGACAGGCACGGATGC-CAGGGAGTTGGGAGCC--AGGCAGCTT---GGAGCAAAGGGCTTTCCCGACCCAATATGTTCCCGCAAAGACGAAGCGGTGACAGCAAA-GGGTGACAGAGCTCCAGGGTACTGGACCTTTGTGGTCTT----TTCCTGGCTGTTTTCCAAGATGCAG-AGGCTGTCTCTCCTGTCTTCCCCC-------AATTCTCATGTATGCATAATTCCCCGTGACTTTCAATG
s HiC_scaffold_1 141361831 982 + 233722169 TAACCTTTTAATTTTAGTGATAACATTTGCTTAGAATTTTTGAACCATGTC--TGTGTATAGAATAATTCCC-TCAAGCATAGAAATTATATGTGGATACGAGGGTACATGGGCAGAAGAA--CATATTGAGTTAACAATGTTAAAAAATATCACAACACTATATACA------TTATAGATACTTTGGGTCAGAAAGTTAGAAGTTAGAATTCTGTAACAgtcataaataaaatgatttagaaaatattcttgattttttttttttgccgtaTCCAGATTTTGATG--TCTATAGAACCAGTGCGCTGTAAGAGGCAAGACACAAACTTTACTTAAAA--TTCAAtacataaggaaaaagaaaaacctctccCCACCCTTACTATT-GACTCAGATTGCAATGCAAGCATTCAAGCAAAGGGCT-----------------TGTATTCTCCAGTGAACATTAAAATTAGCACCCAtgtgaaaattataaaagcaaGGAGCAGAATGTTCACAATAAACCTAAGGAAGATTCTGGTACAGATAAGGCCCGaagtttctttctattttttttctttgttaatgtaATGCTGTTACAACTTACTTGCAACATTACTCCCTGCATGGCGGCCCCCTAATTATTTCATCATGGAGCAGGAAATCCTGGTAGGTCATATATAAACAGCCTGAGGCAGGGACCTCTTCATCTGATAGAGTGTGACATCTGACATCTGTGCAGCCGGC--CTAGCCTGCTACAATTAACCAGGAAGCGCAGACATTTGCTAATGCACAGGCAACTGGGAGCTTAGGGTAACCTGGAGGAGCAAAAGTCTTTCCTAATCCAATAAATTCCTATGAAGATGAGGAAGTGACAGCAAGTGGGTGACGATTTTCTGGGGGTCTGTACCTTTGTGGTCTTTCTCTCCCTGACTGTTTTCCAAGAAACAGCAAGCCATCTTTCTTGTGTTCCCTCCCCTTGTAGTTCTCATGTATGCATAATTTCTCTTGACTTTGAATG

a score=35977
s chr3           154387105 1116 + 160039680 GGGCAACAAGTGGCTGGCTGTTGTTTCTAATTAGAGAAAAATTATTGCTAGAATCAGGCTTGTGAAAGATGGTTCTGGAAGAA----GTATAAGATACATCAGAGAGGGGAGACAGCTTTGCTAGGAAGCCGGTTTGAAGGCTGCT-GCAGGAGGGACCGCTGCCTACACTTG---ATTTCTTCAGCAAATAAAAGCCTTTCCAGT----GAAAAGAGAGAGCTGCAGGGTTTGATGTCTCCCTGGTGTCTTAAGCCATGCTGGTGTGACTTCCATGTTAATTTCTCTAGTCCCTCTCCCTCTTCTCTCCT--------------------------------GAACCATCTGAAACCAGCAATGACTGAAACCACGGCCTCTGG-GGTTAACAC-CTGGGCCAGAGCTCCAGTCATCTCAGTACCTTCCAAGTAGAACACTTTGAAGTCCATGCCCTGTTAGTCATGATATCACAGGTATTTGTCCAAAATAATCACCAGTAGATTTGTTAGAAAGAAAGCTGCCTAACAGGCAAGGATTGGGAAATACAGATGGTCCAATTTGAATTGACTTAAAAAAAAAGTAAGCAGAACAAAAAACAGCCTGTAAGTCCTGATAAGATGTCTGCAGGGTTTAGAACAA-GCATGCTGTATTAATTATTATTATTCACTCTGAGTTGCCACAAGTGTACACAGTACTACATAAGCAGTTGACAGCACCAGAGGAAGAATAATACCCCGGCCACGGAGTGCTTATAATTTATGTAAACACATCCTCTT-----GTTTTTCTAGGCTGTATCACTGAACATTGAAATTTCCCTTACTTTGTTCATATTCATATTTCAGCCCTGGTTCTTATATAAACTAGAAATGAACAGTTTTGGGAAACAGACATGTTTTTCCACAGTGGTAGTTCTTTTCCCCAAGACAAGGGCTGTCTTACTGGGAATTCTGGGAACAGA-AAGCTCCTTGGGTGGGGTTTGCCTC--ACACATAAAATGGGAGTTATGGAGTCTATTTAAGG-GCTCTGGGTAGCAATGGTGTCAATGATATGAGTCCTTTGGACCACTGACTAACCACATGTC-------------AAAGCCTTTG-CACCAAG-----TCCTTTTCTACTGTGAAG----AGAGGACACTGAGTGAAAAGGATCAGAACCAACATTCATTGTTACC
s HiC_scaffold_1 141363589 1131 + 233722169 GAGCAATGGGTGGCTTGAT----TTTcttatgaaaggaaaagtattgCTGGAAATATATTTATGTGAGATTATTCTGGAAGAAAACTGTATAGGATTGGTTGGAGAGGGCAAATCG--TTCATCAGAAGTCAGTTAGACAATTGTTCACCTAGAGAATCTCCACATTCATTCGCCAATTCCTTCCACAAATGAATGCCTcaggaggttaaaaaaaaagatatctttaAATTTTGATGTCT---TAGTATTTTAAAGGACACTGGTATGGCTTCATGGTTAATTTCtctatttcctctttcttctttttcctccacccatttccccatttttttctacatttctgaGCCATCTGAAACCAGAAATGACTGAAATCACACCCCTTGGAGGTTAGAGCTCTTGGCCTGGACCCCAGTCATTTCAACACTATCCAAGTGGAACTCTTTGAAGTC-------TGCTA---ATAATGTATCAGATATTAGTCCAAAATAATCACTAGTGGGGTTGT--GAGAGAAAGAAGGCTCGCAGGAAAAGATTGAGAAATACATATGGTCAATTATGGACTGACTTTAAAAAACA-------------ACCTCGGCTTCAGGAACCTGATAAGAAGTCTGTGGGACTCGGCACAAAGCATGctgtattaattattattattcactCTGTATTGCCACGAGTGTACACAATACTATGTAAAAGTCTGACAGTGCTGGAGAAAGAATAATATCCTAGCCTTGGAGTGCTTATAATTTATGTAaacacattcttttattttgtttttctaagttaTTTC---------TAAGAGttatatt--tttgatcatattCACATT-CATCTCTGGTTCTCATATAAACTAAAAGTGAGTGGTTTTAGGAAGCACACATGTTTCTTCCAAATGATAACTTTCTTCCATAGGAGCAGAGCCATCTCACCAGAAATTCTGAATACAAACCCACTCTTTGGCTGGGGTCC-CCTCGTACATGTGGGATGAGG---AGGGAGTGTATTAAAGGCCCTCTAGAGACAAAAGGGGCCAG----AAGAGT----------GCAGAATTAATAGATGTTTTACTTGGTATTAAAAGTCTTTGTTTTCAAGAGTATTTTTTTCCTACTGTGAAAGCCCAGAGGAAGCCAAGCCAAAGAGGTCAGAGTCAGCACTTACTATTACC

a score=13324
s chr3           154391728 557 + 160039680 cacacacacGGCTGTAGCATTTCCAGTGCTGTATAAACAATGCTGCCTGGTTTCTGAAA-TTCATTTTGCATACATTACACACATTGATATTCAAATATTCATGTGGAGTCCACAGCAAG--TGCAGTGATTATGACCTCAACAATCACCTTAATTGGCCCGG--CCTCTCCAAGAGTGCACCAGGAG--------CCGTCCTTC-TGGCTGCTGATTTACAAATTTGTCCTTTCTTCCTCTCCCTTTTCCCTGTGATCTCAAAGCTCCTTGC-TCTATTAGGAACCACAGTAAGCAAGTTGGGAATAGGAGGAGTTGTGGTCTCAAAAAGTGCTGGTTACACTCCTACTTTGTGAAAACTAGGGGTTAGCACCATGGATTTCCTTGTAAAAATTCCTTGGGATACATTTGGTGTGTCTTGGTTACCAGCACTGTTGGTGTTTATTAAAATTATTCCTCAA-TGCCGGCTGTCGACACCGG-GCTGTCTGTGCCACTACTCTACCTTGGCATGAAAGTGAAGGGACACTGTCAGGCTGGGCAATGTCTGCCTCACAAGAACTGGGGGTCTGGAA
s HiC_scaffold_1 141367423 517 + 233722169 CACAAGCTAGGCAGCAAGATTTCCAATGCTGTGTAAACAATGTAGCCTGGCTTCTGAAAATTCATTCTGCATATATTATATGCATTGATATTCAAATATTCACATGAACTTCACAGCAAGCTCACAGTGATTATGACCTCTACAATCACCTTAATTGGCCCAGCCCCTCTCTCAGAGT----CAGGAGGATGAGCTCAGTCCTTTGTGGCCCTGTGTTTacaa------ccttttt---tctttctttttcctatttgctCGGAAAGCATTGCAGTTGCCAGTAACTCTAGGAAGCAGGTTGAGGGTAGGGTG--------------------------------------TGTGACAATGAGGGACAAGTACTGTGGATGTGTTTA-GGAAATTATTTAACATGGCTTTTGCCTCTTCCATGAAGCAGCTAGATCAGTATTTAGCAAAACTGCAGCTTAATTAATGTCTATAGAAACTGGAATTGTTTGTCATAGTACCATGC--TGATACGAAACCAAAGAAACACTGTGTGGCTTTGTTATCCCTTGTTCAGGAGCA---AGGGTCTTGAA

a score=14428
s chr3           154401824 801 + 160039680 TTTTCTGGGTTTCGC-ATGTCTGCAAGTTTCTCTCCTTAGTCATAGCATGTGCTTGACCTAGGGAGCATGCTAGACTTAGCCCTACGTGTGGAGACAGTGGTAACTGGAGCTGAT-GTAGTAGATCCACCTCCATCTTAAGTGGGTGGTTGTCTGCCAAAG-------CCATAATGACACTTTCA-TGGGTTCTGAAGCAAAGGAAAGGCAGTTTCTTCAGATACCAGAGGATGCAGCTACTTCCGGCATTAGGGAGGA-------CAGCATGGTACCTG--------------TTGTGGGT-----------------AAATATCT------AGGCTCCAGGGAAGATCTTCTTCCAAGTTTCTGACTCCATGAGGGAAGGTTGG----CCAGGCTGTCAGTTC--CTGCTACAATT--------AACGCTTGAGTTTTAT-TGTCAGTGTTATGGGCCACCTGGCTACAGGGAACAATGCATTCTTAAGGAGCCGTGTTGAAAGCTTTATGGCTTTGAGCCAAGCTGAGAGTCCCTGAGCTTGAGGTTATTTTGTTTTGAGGAACCAGGAACTTGAAGAATGTGTAACAGTCCATTCCACGCCACAGACCTCAG-GTCATCATTGTTGACATAACATTGAAATGGAGCAGCCACCTGGGATGTCAAAGCCTTTGCTTCAGTGGGGTTTCCATGACGATCAACTTCAGGTGAGAGCTTGATTAA----------------GATAGGGTTGCCAGCATCCTATTTCCCACTGGCGAGAAAGCTGGT--TTTACTGAAGTCCAAGGGCATGGCCACATCAATTTTAAGGTCTATGGTTTGCAGGTCCATTTCCCGGATCAGTTGTGATTTCTGTTCTATATTTGGTAGAG
s HiC_scaffold_1 141374773 851 + 233722169 TTTTCGAGGTTTTGCTATGTCAGTG-GTTTCT-TCCTGGGTTATTATGTACATTGGACTCCTGAAGCATATTA------------TTTCAGGATACAGTAGAAGCTGGGATTATTTATAATAGATCT-------TAGGAAAAGGATCATTATTTCTTAAGGTAACTTCCTCTGGTAGCATTATCACTGGATTTTGAAGCAAAGGTT-GACTATATTTTCAGATAACAGAGGATA-AATTATTTCC---ACTGGAACGGAATCAAAGTAATGTGTTATTTGCGCAGTTTTCAAGATTGTTAATTTCGAATGGATCCAATGAGATATCTGATAGCAAGTTCttgaattcatttt-ttcctaattAGTGCTTGCATGcaggaaaatttgaaaacaaaaccatcatTTCTACTATTATAGTTCAACCATAGACAATGAAGTTTTGTGTTTTAACAGTATCAGCCACCTGGTTACACAGAATAAGCAGTTCTTTTAGGATTGTCATGAAAGCTTTATGGATCTTAG----GCTGTGA---CCTAGGCtgagagttatttt-ttaaaaagaaataggcacTCAAGTCACTTACCATTCTTCATCCCGTGTCAC---CTTCAATGTTATCAATATTGACACAATGTTCAAACATATGAGCCACTTGAGATTTCAATGCATCTACTTCAGTTGGTTTCTTATTACAGTCAGCCACAGGTGATAGTTTGATTAATGTGATACCACTCCACGTCAGGATTATTAACATCCTGTTTTCCTTTGGCAAGGAAGTCAGTGCTTTGCTGAAGCTCGAGGGAATGACCAAATCAACCCTAAAATACCTTCTTTGTGGGTATAGCTCATGCATCAGTTGTGATTATAGTTTTATATCAGACAGAG

a score=6498
s chr3           154410333 302 + 160039680 aAACAGCATCTTATCATGAA--TGTCTGAAAGTCTGT-CCATGTACTGGCACATGACATGGCTATCATATTGAAACATTCAGTGCTCACTCCAATCTTTATAATGCTCTTTTGTTTGCATTTTCCTTTTTAGAAATTCTAGGTCATCTGCTCACTTTTGCTGAGTCAGCGGACATACCTATTACTTCAGTACTAGGTGATATCCTAAGCTGAGACTCCCTACAAATCCACTGTTGGGGTGCTGTCTGTGTTTCAATATTAGAGTGCAGGCCAAGCTTGTGTTTTGCTGATTCTGGAATTGGCGCA
s HiC_scaffold_1  40483306 305 + 233722169 aaatggcactgactcatggagcTCCCTGAAAACATTTGACACTTATTGGGAGGTGATATTATCCATATATGAAAGAAATTGGTGTTTATTTCAATATTAATAATCTGGCTGTGTTTGTGCCTATCTTTACAGAAATGCTAAGTGAGGTGTTTATTTTAACTGAATCTTTTTCAGCTTCCACTGTTTCAGCACTAGCTGGAGCACTAAGTCCAAGTGCATTGCAAGTTGATTATTGGTGCGTTGTTGCTGTTTCAATACTCAAGGACAATCCAAGCCAGGGTTGTATCAAATCTGTAGTTGGtaca

a score=7920
s chr3           154410356 698 + 160039680 CTGAAAGTCTGTCCATGTACTGGCACATGACATGGCTATCATATTGAAACATTCAGTGCTCACTCCAATCTTTATAAT---GCTCTTTTGTTTGCATTTTCCTTTTTAGAAATTCTAGGTCATCTGCTCACTTTTGCTGAGTCAGCGGACATACCTATTACTTCAGTACTAGGTGATATCCTAAGCTGAGACTCCCTACAAATCCACTGTTGGGGTGCTGTCTGTGTTTCAATATTAGAGTGCAGGCCAAGCTTGTGTTTTGCTGATTCTGGAATTGGCGCATTGTTTATAATGATTAAAGAGGTATCTCAAAAGGATAGTCTGTCACTCTAAACATCTATGGGTGGCTAATTTGGCCTATATCCA------------------------GATACCTTAGAATTCTGCCTTGTAGAAGATATTGCCTTGAAGGGTGATGTGTGCTCCTATGTAGTTGCTTGTGA--TGGTT--TACTTTACTTTATTTTCCCAGAAAGATAATTATCATTATTATTTTTATTATGCTTGGCATTGCAGGTAGTGGTGGAATGTCCATTAGGTGGCCACTGATGC-----TTCTGATGGGCCATACACCAAGATCCCCACAGCCT--------------------AGGACAGAATCAAGGTCCACACTGCTGTGGGATGTCTGCTGCTGAGATGGAGTCAAGGCCTAAGACTGTTGCAACTGCCCATGAATGATTCTGGTTTGTATAGAAGATAGCTTGACCAGG
s HiC_scaffold_1  87042695 677 + 233722169 ctgaaaattttgatgcttgtTAACACACAAAATCGCCTACATTTTCAAAGATTAGATAATTTTTCCAAACTCTGTAATCTAGCTATATGCCTGGC-------CTTCAAGAAATTCAAAACAGTCTATTTATT----CTAAACCTGTGGACA---CTGGTATTTTAACACTAACTGGAATTATAGGTCCAGGTTTGCCATAAGCCTTCTTTTGGTGTGTTGTCACTGTGTCAGTGCTAGAAAGCACCCAAAACCTG-GATTTGCT-------------------------------CCAAATCTGCAGTTCAGCAAGGTAGTCT-TCTTTATAAGTTTCCATCTGGGACCAAATAGGTCTACATACATTATCTATTGTCATTTATCTGTTAGGCATTACATGATTCTGCCTGGTTCTGGGACTCATTATGGAGTG------ATGGTCTTGGATTTCTGTATACGACTTGGCTCCTACTCCACTTCTTCCCTTCCAGCAGACAATTATTATT----------TTGTACTGG---CTGGAAGAAATGTGGGCACCCTCAC-----GGCCACTAGTATAGAAATTCTG---GGCTACATGCTAA---TCCTACAGTCTTCTGAGACCAGTGCAGTACAAGGGCAGAACCATGGTCCACACTGTTGTGCGATGACTTCTGCCAAGATAGACTCCTGGCCTGAGAGCATTGTAACTGGCCACAGGTGATGGTGGCCAGAATAAAAGTCCAGTTCACCAAG

a score=5482
s chr3           154410398 629 + 160039680 ATTGAAACATTCAGTGCTCACTCCAATCTTTATAATGCTCTTTTGTTTGCATTTTCCTTTTTAGAAATTCTAGGTCATCTGCTCACTTTTGCTGAGTCAGCGGACATACCTATTACTTCAGTACTAGGTG----ATATCCTAAGCTGAGACTCCCTACAAATCCACTGTTGGGGTGCTGTCTGTGTTTCAATATTAGAGTGCAGGCCAAGCTTGTGTTTTGCTGATTCTGGAATT------GGCGCATTGTTTATAATGATTAAAGAGGTATCTCAAAAGGATAGTCTGTCACTCTAAACATCT-------------ATGGGTGGCTAATTTGGCCTATATCCAGATACCTTAGAATT-----CTGCCTTGTAGAAGATATTGCCTTGAAGGGTGATGTGTGCTCCTATGTAGTTGCTTGTGATGGTTTACTTTACTTTATTTTCCCAGAAAGATAATTATCATTATTATTTTTATTATGCTTGGCATTGCAGGTAGTGGTGGAATGTCCATTAGGTGGCCACTGATGCTTCTGATGGGCCATACACCAAGATCCCCACAGCCTA-GGACAGAATCAAGGTCC-------ACACTGCTGTGGGATGTCTGCTGCTGAGATGGAGTCAAGGCCTAAGACTGTTGCAACTGCCCATGAATGATTCTG
s HiC_scaffold_1 106730599 536 + 233722169 ATTGAAGGATTAGTCATTTACTGCAGCCTTTCTAATCAGGCCTAGTTTGTGCTT--ATTTCCAGAAATTCTAAGCCAGCTGCTTATTATATATGATGTAGT---CATATCCACTATTT--GTACCAGATAGCACACATGCTATACTAATA--------GAGTCTGCTATTAGTATGCTGCCAATGTTTCAGTGACTGAGGGCAACACAAGTCCAGGTT-----GGTCCCAGATATACTGAAGGTATACTGTTCAGAATGAATAGGGC---------AAAGAATAATCTGTTcccacaagcatctgcctggggCCACCATAGGT--CCAAACCAGCCTGTGATCAGGCACCGTGGAATTGTGGCCAGCTCTGGGTAAAATATC----------------------------------------ATGGATTTACCAACCCCATGATCCTA-------------------------------------CACTACATGTG---------TGGCCACCAAGTCAC-ACAGTT--------TGTGTCATTCTCTGGG---CCCACAGCTCACTGAAATCAGCAGAGTTTTGAGGAAGCCCTGCTATGGGCTGTCTGTTGTTGAGGTGGATTCACAGCCCAAGACTGTTGTAACCACCAGCAGCTGATGCTG

a score=4547
s chr3           154410401 639 + 160039680 GAAACATTCAGTGCTCACTCCAATCTTTATAATGCTCTTTTGTTTGCATTTTCCTTTTTAGAAATTCTAGGTCATCTGCTCACTTTTGCTGAGTCAGCGGACATACCTATTACTTCAGTACTAGGTGATATCCTAAGCTGAGACTCCCTACAAATCCACTGTTGGGGTGCTGTCTGTGTTTCAATATTAGAGTGCAGGCCAAGCTTGTGTTTTG-----CTG-ATTCTGGAATTGGCGCATTGTTTATAATGA--TTAAAGAGGTATCTCAAAAGGATAGTCTGTCACTCTAAACATCTATGGGTGGCTAATTTGGCCTATATCCAGATACCTTAGAATTCTGCCTTGTAGAAGATATTGCCTTGAAGGGTGATGTGTGCTCCTATGTAGTTGCTTGTGATGGTTTACTTTACTTTATTTTCCCAGAAAGATAATTATCATTATTATTTTTATTATGCTTGGCATTGCAGGTAGTGGTGGAATGTCCATTAGGTGGCCACTGATGC-TTCTGATGGGCCATACACCAAGATCCCCACAGCCT---------AGGACAG---------AATCAAGGTCCACACTGCTGTGGGATGTCTGCTGCTGAGATGGAGTCAAGGCCTAAGACTGTTGCAACTGCCCATGAATGATTCTGGTTTGTATAGAAG
s HiC_scaffold_1  43213584 544 + 233722169 GGAAGATTGAGGGTTTATTCTATTCTCCATGATCTTGCTTTGTGC------CTCTCTCCAGAAAGCC-AAACAGGCTGTTTATGTTCTCTGAGCCTGTAG---TAC--ATTACTTGAACACCAGATGGCAGAACAGGACCAGGTTTTTGGCATGTCCCCAGGCGGTGTGTTGTCACTGTTTCAGCAATAGAGGGCA--CCCAGGCTCTGGTTTGTCCCCCTGCAGTCTACAGGTGAGGTGTTATTTAGTATGAATTTGAGGGAGCACCTAAAATGGA-AGTCTGTCCTCAGAAGCCTCTCC------CTGGGCTAGGATAGGCCCAG--------------TGCCTC-----AGGCACAG-------------------------------------------------TTACTTCAGAGTCACTGAGATGGAACCA-----------------------------GTGGTCCGGGATTGGATGTCACACCTGTGGCCACGGGCACCTTATGCTTTGTCACACATGGAG---CCCACATCCTGCTGAGACCAGCACAGCACTGGTGAGACCAAGGCCCACACTGCATCAGGTTGCCTCCTGCTGAGGTGGACTCATGGCCCAGTTCTGCTGCAGCTAGCCACACGTGATGCT-GCCTGAATAAAAG

a score=31692
s chr3           154417955 1437 + 160039680 AAACACCTTTGCGGAACTCAAGAAAAACAAAGATGCACTTACAAATGCTACTCGTGGAGATGTTGCCTGTGTGGACTGCCTTAGGGTAGACACTAGTAAGCACGGTTTCTTC-TCAGGAGCTGCT--GACATTGTTCACCGGTACCTGCTAT---AAAATTTGTCAATTTAAACTGAGCGTTTTTTCT-------TTACTCTTTTGCTTTTCTTTCATTTGAAGTAGGAAAAAAAAAACTATTTTGT-----------AAAGGTTATCTT-----------GGATAAAGATACTAATAAGCATTTTTTTAAAAAAAGACCTCCGTTAGGCTTTAGCTAAGAAGCTCTGA--AGGATAATGAAAAGAAACCAAAGAGTGAGATAAATGTTGTGAACCTGCCTTTTCTGACTC----TGCCAGCAGCCATATCTGT--TGCCTGTCTTCCCCATAGAGCCTGCAA------AGCAGCCGAGGGGCCACCAGGGTGTGAACTCAATCTGTTTTGGAAGTCTAGAAGATA-CCCAT---------------------------TCCTGAAAGCA----ACAGATGCCAACTATGAAAGCCAGTCAGGTTGCTTAGCTTGC-ACCTTAGTCCTGTGTCTCCAGCCAGTTGGCCTGCTGCTGGCCTTCC-----GTTGTGGGGCAGTCACAGTGTGCACCCATAAACGGGAGAAATTGTAACTGGGCTACCCAGAAGCAGTG-TGTACAGCTGCCTCCCATCAGAGTTGCAGCCAACCAAGCCTGCAGAGAGATTAGCTGCTATAGATGGGCAGGTTATGGGATCAACATTTTCTGACATTAAGCCCTGCCATGTGGTTGGGGCTTTGCTTCCCTTAGCCAGATTTAACCCCAGATTTTTCCTCTGGGTGTTCCACCAGCCTTAGAAACCCAGAGGCATGCACTGTGGCAGGAT------CCATGCATGGGTTTTTTGTTTGGTTTGGTTTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAATAACTGGGATGCAGATCTGTAGGCTCCCAAAGGGAGGAGG----------GCAATGGTTATGAGTACCAGCTTTGGAGGTGAGTCAATCTGGTTTTGAATTTTGCTTTCAACATCTATAAGCAGGATGACAAGTCTT--GTCTGCAAAATGAAGACCACATC-TTCCCAGGGAATATGCAAATGTTTAAGCTAATAAAATATATAAAAGATTTAATGTATTATTTGGAAACTATG---ATTTCATTACCTATAAGGCTC--------CATGATAAACTGCATAAAACATTAAAATAATCTAA-TAGGTTCTGGGAAATTATAGTATGTTTTAATAACTTCACAAATGGCATTGACCCTAGGTGGAAAATGTTACTTTAATTGGTGAATCAGAAAAGTTCATT-CAGATGACTTAATCCTA---ACACGTCATGGTTTCTGAAATTGTGTTTATGG--TGTTTCAGTCATTGGACAAACTCGTAGTTTATCTTCAGATTAGGTAGTgcagggcagtggtggcacacacctttatcc
s HiC_scaffold_1 141394872 1464 + 233722169 AAAAATTTTTGCCTTGctccagaaaataaaagatatgcaTTCATATTTGATTTCTAATTATGTAGTACGCACACACTGTTATGACTTAAAAACCag----catattttcttcattaatggCTGCTTTGGTGTCATGTGGAGATACTTACTATTTCAACCAGTAGCAATTTGAA------GTTTTTCCTCCTACTtttactcttct--tttcttttcatttgaag----aaaaacaatagTGTTCTATTTATAAAGACTAAAGGTCATTTTCAGGTTTTGGTGGATGGaaatagtaac---------ttttaaaaaagacatctatTGGGATTTAGTTAAATAGTTCTAAGTAAGCAAGTGGACAGGa-ccaaagaatgaaataaaagtccTGAGC-TATTCCTTCCGATTAGTGATGATGGGCACCCTACCCGCGATAGCTGTTCTCCCATTGGCAGCTGCAATCTCCTACCACACA------CACAGTGGAGTAAA-GCAATCAGATTTGGCGGGCTGTGTGTTAGCCCATGAGTTTAGCCATGGAGTGGATGGGATTTCCTGTAGGCAGCAGACAGACTCCAGCTCTTAGTGT---TCCATTTGCTTAGCTTGTTCCCTTCGTCATGTGGCTTCAGTCATTTGGCCTATAAGTGGCTGATCTCAGAGAAGAGGGGCAGTCACAGTC--CCTTCATGCAAAGGAATCATCAAAATCAGGCTACCCAGAAGCAATCCTGCACAGCTGCCTCCCATCAGAGTTGCAGTCAACTAACCCTGCTGGGGGATTAGCTGCTGCAGACAGCTAGGTTATTGGATCAACATTTTCTGACTTGCAACCTCGCCATGTGGTGCAGCCTTTACCTCACTGTGCCAGATTTGACCACAGATTTTTCCTCTGGGCTTCTCGCCAGCCTTTGAAGCCTGGAGGCTTGGACTTTGGAAGCATTCACCCTCATGCACAAGTTTTTC----------------TGT-------------------------TGTGCATTTTAATAATTGGTATGCAGAGATATGGGCTGAGAACAGAGGGAGGTAGTTCCTGCGCAGTGGTGAGGAGTACTAACTTTGGAGTTAAGCCAGTTTGGATTTGAATTTTGGTTTCAGCATCTCTGAGCTGGGtgactattttttcttctataaaattgGGATGATATCTTTCTTATAGATTGCAAAAATGGTTAAGTGAGT-TAGTGCATAAAAGTCCTGACAAAGCG---GAAAACAGtaagtattttattaattttaaggtTCTATAGTATCATAGTGGTTTTCCTGACATGTGGAAAAAATCCAATTTAGTTCTGGCACATGATAACATTTTCTAATA-----ACAAACTGTACTAATTATGTAGGATGCATGTCACTCTTATTGATTAATCAGAATATTTCATTCCAGATGACTAATTCCAAAGCATAAATTGTAACATTTGAAATGTTGCATATGGCACATTTTACCCATTTAATAAATTCTTAATATATGTTCGGATTAGGTGTTA---------GGAGGCACACAGTTTAGTTC

a score=30890
s chr3           154421749 736 + 160039680 TTTTTGTCCCTAAATATTGGGTGTTTAGCAAGAAGTTCGAGATGAAAAATAGCAATGCCAGCGACCAGTTAGGGAAGTTGCAGCAGAAATAATTATACGAGCTAGCTTCTGAGAGAGGCTTGCCCCTGTGTACTTGAGCTTCTAGATGACCCTTGCAGTAAAGTAGATCCTAACTTGATCTAACTCGACTGTGGCTTTT--AATACCATATACAAAGAGAAGTTTAGGCTATAAATGAATGATTGTAACTTACAAATGGTGTAATGGGG-AAACACACAGAGCCAACATGCTGAAGTGTTTTCTGTTATTTATACTAAACAGTTACAGAAATTATACAGAGGTGGGATATAATGACTGCAAATTACATGCCTTCAGTAATCGTCTTGTTCAGTAACCTTTATCCTTTAGTACGAAGAAATCCGTTTTGCAGAAGTGGGATGGGAGTAAGAAAAAGAACCAAAAAGTTCAGTCTGG-------------AGGTAGGGGTGTGTGT------GTACTG--------------TTAGGGAGAATAAGAACTCTTGCTTCTTTGTCCCAGTACAAGGTATCTGCATGCCTTGCTTTCTCCCAACTTTCTTTTACCACTCTTGGTAATGTGGCTTCTATTTTAAGTAATTAAATACTAGATC------CCCCTTATTAATTCCTTTTTTGTACATAACAAACTTTATGGCAAGCTGATGGGATGCTTGATAACAGCTGGAAGACAGAGGCAGAGCCTCTTCTCTCTCCATACAGTGAGCCAGG
s HiC_scaffold_1 141398579 733 + 233722169 TTTTTGTTCCTGGATATGTGATGTTT-----------CAGTGTAAGAACTAGCA-TGCTATTAGCAAGTTATGGAAGTTGTGAGAGAAATAATTACAGGAGTGAGCTTCTGAGGGATGGTGGTTT-TGTGTACTTAAGCTTCTAGATGACCCTGGCA-TGAAGTA----------TGTTCCAATGAAGCTGTGGTTTTTTTAATACCACATACAAGAAAAAGTTTAGGCTAAAAATGAATGATTGTAACTTACAAACGGTATAATGGGGGAAACGCACAGAGCCAACATACTGAagtgttttctgttatttatgcTAAACAGTTATAGAAATTATATAGATGTAGGGTATAATGACTGTAAATTATATACCTTCTATAATAGTCTTATTCAGTAACCTTTATCCTCTACTGTGAATAAATCC-TTTTCCAGAAGTGGGatgggaggaagaaaaagaacccAAGAGTTCAGTTCAGACAGCTTTGGATTAGACAGTATTGAGTATAGCTGAGTGCTGAGTGTCCTCTATGTTTGGAGGAAAtatgcattttt-ctcctttggactAATAGAAAATACATATATGCCTAACTTTCTCTTAGGCATCTTTCTTCATTCTTGATAATGTGACTTCCATTTTACATAATTAAATACCAGGTTATTTTGCCCCCATTTAAGTCC-TTTCTGTGAATAACAGA------AGCA---TGGGGGGCTGTTTGGTGTCACCTGGATATGACAGATAGTTTTTGTTCTCT---------GTAAACCagg

a score=8084
s chr3           154424516 216 + 160039680 TTTTAATAAAAATATTTTGCATATTCAAAAA-AGAAGTTTACAGACAAAATAGAAACCATTCTT----TATAATTATCCCCTCCAAGTACCGAGGGCATGTTTTCACTCAGCCTGTGTGATCATCAAAGAAGCCTGGATTTTAATGAGATAGGTATCTCAGAGATGAAAAGATTGACAGGCGCAGCCTCC-----TTTGCTCCTGTGTCTGGCTCACA-ACCCAAGT
s HiC_scaffold_1 141399821 227 + 233722169 ttttaagacaaatattttgtgttttcacaaacagaagtttagagacaaaataagaaacatttttatCTCACAATTATTGTATAAGGGCACCAAGGTTATGTTTTCACTCAGCAAATAAGATCATCAAAGAAGCCTGGCTTTAAATGAGGGAGGCATTGCGGACATCAAATGGTCAACAGAACCACATGTCACGTGTTCCCTCCCATGTCAGGCTTTGAGATCCAAGT

a score=50958
s chr3           154428690 3896 + 160039680 [encoded data, 4358 characters]
s HiC_scaffold_1 141404432 3924 + 233722169 [encoded data, 4358 characters]

a score=24112
s chr3           154440767 1102 + 160039680 TCTTCTCTCTCCTCCCAGAGAGCTCAGAATCAAAGAGCAGGCCCTCTGCTAGGAACCCATCAC---ATTCATCCTAAGCTGTGATTTGAAGCCAGTTCCCGGCCCTACAAACTTAAGACAAAGAGTAGCCCAACCAAAGTGCAAGCTGTGGGCAATTAAATGGCTCTCAAAACATCAGGCTGCCTCTTAGAATTCTTACCCACAGCGAGCACACCACATTCTATACCTTTGCTCTACATGTAGCCTCTCTGGAGGCATTTATAACCAATTACTGTACGTTCAGGTCTGTCAGAGTGCTGGAGTTAATGAGTCTCATTAAGACCTCCTACAAAGGAGTGACACACACACACAGATCCCTGCCCATCAGAGGACCTCTTCTGGTCTGCTTTTTACAGCTGACAGGCAGTGGTAAGATGATGAGCTGGGCCAATCTGACAAGGGTGGATAGAACTTGATCATTCAAACCCATTCAGGAGGTTTACAGAAGGCTCACA----ATTGCCCTACTGGGCCAATTATATGATTCTCCAAGATCACAATTATGCACGG-AGTTTTTTGGGGAGAAGGAAGCCCACAGAAGGATGTCCAATTGTCATTTT----------AATCT---------GGGCCACTGTATAGGCCTCCTTAACCTACGCTCATCTCCCTGCTAAAGTTAAGTTGCCAGTTCCCAGGAGGCACACTTCCAGATAAGACAGTGTGGGTAGCTGG-TAGAGGGAACAATCCACATACTCTTACCATTTTCTTTTTTCAGACT--GCAGTTCTGAGCTTGGCAGCA-CCATAACATACTTACACACTGGACAGGGCTAGCTGCACCATCCATGCATGGAGCAGG-GAGCATAATGAGAGAGTTGAGCTGTAGCC-AGATGGAGTTGTGCCCAGGTGGAGGCTGGCAAACCTCCT---------------GGGCCCATGG----TTCAT----------GGCACCAAATGGTAAAGTTGCTCTATCCATGTTGCCAAA--------CCCAGTGGCTTGGCC---------CAGGTAACTTCTGATCTGGCACAAGCTGGAGTGATCTCAGTCTGTGGGCAGCCAAACATGGCACTC-CACAGAGCA-CACACATAACTTGGGATGGTTGTGGTTTCCAGGC-AGCCTTCCAGGACTGATATATCCCGTTCAT
s HiC_scaffold_1 141418359 1114 + 233722169 ttttctctctccttctgg----------------------gCCCTCGGTTAAGAACCAGTCACTCTCTCCTTCTtaagctataatttgaagctagTTCCTGGTCTTGCAAACTTAAAACAAAGAGCAACCCAAGCAAAGAGCAACCTGATGATAATTAGATGGCTCTCAAACCATTAGGTTGCCTCTTAAAATTCTTACCTGCGGAGAGTACACAACATTCAACACCTCCACCCCATATGCAGCCTCTCACTAGGCATTTATAACCAATTATCTTACATATGGGTTTGTCAGAGTGCTTGAGTTAATGGGGCTCATTAAAACCTCATGTAAGTAAG------GAACTCACAGATCCCTGCTGGTCATAATGCCTCTTCTGGTCAGGTTTTCATAGCTAACGGGCGATAG-AGTTTGACAAACT-AGCAAATCTGAT--GGATGGATATAA-TTCAGAGTTTAAAACCACACAGGGGCTTTATGAAAGCTTCACAGGCTATTGCT---CTGGGGCCATCAGAACTTTTTCAGAAATAAAGGGTATCCTGGGTAGGTTTTTGGAGAAAGAGAAG-TCAAGGAAAAATATCCCATGGTCATTTTCTGGTATGTCATTCTATGGTACTGGGGCCACTTTCTAG--CCGCTCCATTTCCATTTCCCTCCTTATCAAAG----GTTTTTGGTCATGGAGAG------CTACAGGAATGGCC-TCTGAAAACTTGACTAGAGAGGagaattctc-------------tcctctttttcagATGTAGAGGGTCTGC-CTTGGAGGTAGACTGAATATGCTTGCACATCAGGCTGTTCTAGTTCCTCCTGCTATG-GTAGACTGGATGAGCAGAATGAAGGAGCTTGTGTATAGATGAGAAATACCTGTAACCACTTGGAGTCCAGAAGCCTTCCTAAATTGGCAGCAGAAGAGTCTGGggcatttttattagaaaaacagGCATCTATAACTGGAGCTAC---ATCTCAGTTTGCAAAAGATGGGTCCTTGAAGGTCGTCCTGATTGTTACAGGTAACTTCTGAGTTGACATAGGCTGGCATAGACTCAGTCACTAGTTAGTC-AGCATGGTGCACACACTAAGAGTTAGGCATAGACTGTAATGA-AGGGGTTTCCAAACTATCTTTTCAGAAGGTATGGAAGCCATTCAT

a score=21046
s chr3           154452174 1117 + 160039680 AGTCCCTTTAAACTCACCCT--GAGGCTCCAGGTTCAAATTCTAGCCATGGCACTTTA-AACTCAAGTGAACGAACAGAAATTCCTT--TTCATTTGAACTGTGATGGCTTCATTTGTAAA-TAGTATTAATAGCACATCTGTCTCAGTCATCCATTACAAGAAT-AAGTAAAATCTGCATACAGAAACGTTGGG----TCCACACTCGAGCCAGATCCT--------AGCATGCTTTCCCTGTCT-----------------GTTAGTGAAC----AGAGGAATGAGAGATGGCTCTAC-----CTGTTTTCTGCCAC-----------AGTAT-CTGAGCTGGTCACTCACCTCTACTGTACACTCTGA-----CTTTTTTCT--AAGGCAGAGATGAGAAATGAGATACAGGATGTTTTGAAGGAGTATGGATGACTCAGTTTTGGACTAGAGAACTGGAGTCTCCAGAGTAGGGAAGAAAGGGGCAGAGAGTATAAGGAACAACATGAGATCATAACAGATAGACTTCCGACCTATCATTTTTGCTTAGGCAAGGCCTGGTCTGCAACTTTCACACACAGAAACATGTCGAAATGCTCAGATTCTTGTTTTTGACGAATGTGTCAGTGACGGGCCTGTCTGGAGTTCTTCTCTTGGCTCCAGGGTAAAGAATTCCAGCCAATTTCTTCA-CATAAAAGTTCAGCTTGAACTTTAAGTCCCTACCCACAAGAAAAGTCCATCCAAGATTTCACATGACTGACATACAACGTTTTCAGATCTGTTCAGCTGCATAATCATAGATTTTT------------AACCACCATGCCACAGTCCCGGATTCTTTGGGTCATGGTGTGAGTCCAGCCAACTGTCATGGTTTTTTTTTTTTTTCTTTCCTATGAATTCCTCTAAAATAAATTATATGAGTATCCAAGTTCTCAGAGCTCATGGTAGACACTAGTGTCT--GGTAACTGTCACTTTCCTATGGAGAAGAACTTCATGACCCCAGCACTCTGT--CCACTGGGGAGCT---------GTCTATCTTTTTCTGATTCTTTATCTCTTTATCTCTTTTACTGTGGGTTCTTTACTATGCTGAGAGCCTATCCAAACCTCTTCCCCACCCTCTTGCTTAA-CTTGACACAAGCCCTGCAGCCTACATGT-CTA-----TAAGTGAAGAGAGAGAAAACAGGCAG
s HiC_scaffold_1 141433802 1115 + 233722169 AatccttttgaagttttcattgGAGAACACATATTCAACTCTTAGCAATAACACTTAACAAACCTGGTAGTCTAAGAGTAATTCTTTGACTTCTCTGATCCTTAGtaacttcatctgtaaaatgagatgaatagcatttctgttttagagAGTTATTTTagggattaaataaaaaatatatgtgaaaCAGTTATGGGATTCTATGCAAAAGTTAGAAGCTTTCTGAAAAGCATGATCtctatatataattattaaagaaatcaGTTAATGAATTAATAGATAAATAAAGCAGGGAATTAAGTAGGATGTGTTCTACCACTTTAAATCTTTATTATGTTGAGCTAGTTGCTTAA---------GCATTTTGAGTATCCTTTTCTCTGGAGAGCAGAAGTAAAGAATGA--------------------AGTATG------------------TAGAGACATACA---------------AGGAGGTTGGAAGAGATTATAAAATACAATCT-------------------TTTCAGCTTACC--TTTTGCTCAAATTAAATCTTGTCTGTGCCTTTTGAATATAAGAACAGGCTAACATTCC----TTCATGTGTTTGACAAAAACATCAGTGCCTAGCATATCTGAAGTTCCTCTCTTGGCTCCAGGGCACAGAATTCCAGCCAATTTCTTCTTCACAAAAGTTCAACTTGAACTTAAATTCCCTACGCACCCAAGAAGCCTCTCTAAGGTTTCACATGACTGACATGTAGCATTTTAAGATTTGTCTGACCACATAAGCATGGATTTCTAAATACTATGTGAAACACAATGTGAAAGTTCTTGATTCTAGGCTTCCTGGGATAAGTCCAACCAACCTtcaag--------tttgtttttttcctgttcattctGCCAAAATAAACCACC--AATTGCTAAGGTCTTGGAGCTTATTATATGTACTTGCATCTCAGGTATTTGTCCCCTTGTTGTGATTAAGGTTTGCAGGATCTGAGCACTCTGTGgtcacttgttatttttttttttaatctactttaTTCTGATG-GCtagctatgttttgtttttctttggagcTCTATATTCTGTTTAGAGTCTACTTAGATAtcattttt-tcctctgtcttAGCCTCAATACAAATTGTATAACCGACAGGTACTAGAAATTAAgcggaaaaagagaaaagatgtag

a score=38893
s chr3           154460445 2778 + 160039680 TTTTAGGACATTAAATTTTAGGGTTGTTTGTTACACAGCTGAATCTAAGAGAAGTATG-------GAGAAGTTTGGTATTATGTGGGAGAGCTACTTTTGTTTTGTTTGTTTTTAAGCTTCTACTGTTACTGCTTTTCAAAAAAAAAAAACCTTGACTCTGAAATGT--CTTCTCTACAGTGATTCTATGTCAGACTTCCCTTCCTTTGCAGGCAAAAAGATTGAGGCAGAAAGGGAAGGGGCTCATGTCATTTCATAAGAATCTTCCTCCTT-TCACTAGA----------------------TAAATGTTTCTATGGGCTGACCAC-AAAAAAATCAAAGGAGCCACCTTCCTGCG---------TACAGGCAGTCATCCGTGCACAGTTCATGTGAAGTGCATCAACAC--CCT-----------AAACTCAGTGGA-CCTCAGTTTCGCAGGTTTGAGTCCAGACTGAAGAAA-CACCTTTTGTTCGAACAATATGGTCACAGTTAAATATTCCTGGGAAGTA---------------------TCTGAGGTCTGTTACCCATTTGTTTAGTGACAATCCTGAAATGAATAAACTTGAGGGTCACATACTAGGAATGCTAGCCCTGAGAAGGGCTGCTGTAACTCGTCTTAATTGTACAACCACACATTTTAACTGCTTTA--CAGAACGGCTTCCTTGTGAAATCAGCAGAGATAACACTCTATTGTCATGGGATGTGGAAGTCTGAATTTATTGTGGGAGGTTTGGTTGACTAG---CAGGGTCACTAGGG----------------------------------TTCTATTTTCTTTT------------------------ATTCTCTTTAAAATCT--GTCACCCCACATATCTTA---------CAACTCCTTCCAGAATATGTGA--GGATCAATACTATTTCATACAAGCTCCT--CTGTGATCTTTA-AGCTCGGCTTAAATGCAGCATGA--TTGCTCT----TCGTGGAGCTGGTACAAGGAAACAATAAATGTAGGAAGAA-TTCCTCGTCGACAGCTGAGAAGGCTACC--TCTTCTCAAAGCAGTTGGAAGTGTCAACATTATGCAGGGCTTTGCGGTTGTCTTTAATCTTTGGATCTCAAAGCACCTTGCACACAATTTCTGTTAACACACAAAACCCCATGAAATG--TTCGTTCTCCTAAAATTTCCCTTTACACGG----CCTTTTCTAGGCA-ATGGCAGTTTTAAGCGTCCTTCACTGAGGTCTTT-AGAATTGTAAATGAACAAAGAGG-GCTTGATCTCTCTCTTTGCATCATGATTTTTGTGTCTTACGTGGAATGTACATGCCTCTTGATCCTGTCTTCACCCACTGAACACCCGCTTCCCTGGATGCTTTGATATAGTGAGCATGTCTATGACGCTCAAATCCTAGACAGGTGGCAGTCTGTTTGTTCCTTAGATGTTAGGGACAGGATTTGGAGATAGTTTATTAATCTTTTTCT----TAAGTGTCTGAAGGATGTCCGTTGAAG-CATATGGAGCCGATTCCTACGAGGCACGGGTTTAGCTCTGATTG------GAGTCCTCGCAGGCTAGACTGCCTCC-TGAATAGCATATGGGAACTTTTTCCTTCTGTTTCTTCAAAGACAATGATTGAGAAAAAAATGAGCTAACGGAACATTCAGCTGAGGCGTGCTTAGGTA--CAGAGACGTACATG----TGTAGAACTAACTGTGAATTTTTT-------AAGGCACGGAGAGTTTTTCTTTTGTGTATTCATCGACCTAAATCCAGTGGTTAGATGAATCATGTTATTATAGTAGAATGGTTTGTTTT---TCTAACTCTCTAGTTTATTGTTAGCTTTATTTCTTTCATTGGTATTTAAGGATCTGATTTTTCTCCTGGAGGATGTTACAAACTATTCTCTTGTTTTCTCATTTTGAAATA----TGAATTCTGCCCATTCCCCCAAACTCTGTTCTCAGG-AAAGAGGCATGCGTTTGTTGTATTAACCCTTAACAAACAATACATCTCAGAGTAA-AAGGTGCCATGACTGACAGAGCAC----ACGGTTTTAGTTCAGATATGTG-GTGGGCAAATAAGCTGTATTTAGGGACACAGGAACTTTTGCTACATTTCAGAATTAATCTCGTAAGGATTTGCTTACGTACAGAACCACTA----TTCAAAACAACATTTTGGATAGGAAATCCCTTTATATACTTCAGGC---TCAGGAAGCCAGGCACCGTTATTAC-----TGAGTAATGTGAACGC-------------GTGAGTCCCGGGTCTGATAGTTCCTGTTGATAGGTTGGCATCTGC-CCCGGCAGCTTCCCGGT--CAGAGAGTTCTAATACCAA----------------------------CACTCTAATGTGATCAGGAAGCAAAAGGACTTCAAGGCCCAGACTGTT---------GCAGCCTCAGTTCTTGA----------------------------------------CCACTTAAAAAGCGAGGCTCCTTTTTCTTCCCCTATGGCCATGTTATCTTTACAAGAG---CACACTGA-------------AGCCTTTAGCTCTGAACAATGATCACGAATCAATGCTGTGCACAGTATCTATGAGCAGGTGAACTGACGGGGTAACGCACCCATGTGGTTTACGTCTC----------------TGTTCTCCGAGAAAAACATCCAGCGTCTAATAATTGGGTCTGGTTGCTGTAGGGTTGGTCGGTGTTATGTGAATAATTGTGTCTAATTGC---TGTAGGGTCGGTTGGTGTTGTGTCGGATGGCACTTTCTCTGCGGATGGACAAAGCTGAGGTCATAAAGGCTTCTCTAAGCCCCTTTCC--AGAAGAGCAAAATATAATCATCTTCCAGGAGGCTGG-----AGGAGAGAGAACTTGCTTTCCACGTCCTCCCC-GTGGATAGTGATGGGTTGGTCAGGTTTCGGCTCAGCGGCCCTTCAGGCGTC----CTGCTCAATTTACTGCTTTCAGTGGT-----------GAATCTCCTTGATATGCACTTCTTCCTTCTGATGGATCTgagagagg
s HiC_scaffold_1 141444874 2963 + 233722169 TTTTAAGATGTTGAATTGT-GGGTAGTTTGTTACTCAGCAAAGTCTAACTGAAATACACCAGCATGAATCTTTTGTCACAAGCTGCGATGAAAAGTTCTATTTT--TGATTCtttaactttcattttcattgctgttgAAAGATCCA----CTTGTCTCTGAAGCGTTCCTACTCTCCAAGGATTCG------------------CCTGCAG------AGATTCAGGCAGAAAAAGAAGAGTCTCATGTCATTGCATAAATGCCTTCCTGTTTCTGGCCAGGGTCTCTTTTTCAGTCTGATTACCAAATGTTTCC-----CTTACAACTAGAAGGATCAAAGAAGCCACCTGCCCCTGGGGCTGTGGTTTAGCCAGACTTTTATGCACACAGCATGTGGATTGCATCAACACGTCCTGAAATGTCCAAAAATTTGCTAGAGACTCAGTTTCACAGGTTTGGGTCCAGACTAAAGAAATCACCTT------GAACAA----GCAAGAGTcag-----tctgagagagagagagagagatggagcaGCAGTCTGAATTCTCTCATCACTTTGCTTCGTGTGAATCACG----TAAAAGAGGTGCAGTCTGCACCATTCCTCTGCTTTCAGTGATGAAAATGACTGTAATTTAATGTAATAATAGAATCATGTATATGAACAGTTTTGACTTGAACATCTTCCTTGTGAAGTTAGCAAAAAATGAA-------GACAGGGGTTGTCCGTATCTTTATCTGGTAAGCAAGCGTAGGTTGGTAAGGCAAACTGTCACTGGGTGAGAGTCCAAAAGCATGGATTTgatgtttatttcttctatttgctTCTTGTGTAATCTCAAGCAAATcactaacttttttttaaatcttagctgcctcatttgtgttaagataaaaataactacCTCTGGAATatatgaaaggataaaaaaaaat-----caggcatcTTCCTTTGATCTTTACATCCTAACTGAAATGTAGTGTTACATAGCTCTGTTTTCAAATTGATAGCATCAGGAAGgaataaatatggaaaaaaattatttgacaaCAGCTGACACAGTCACTCATGTTCTCACAATTTTAGGGAATGTGAATACTTTATATAGCTTTACAGTTATCTTTAATCTCTGCATCTCAAAGCACCTTGCAAAATTCTTTTATTAACACATGAAACTCCGTGAAATACATTTGTtcccattttatttccttttagacAAGGTACCTCTCCTAGACATCCAGCAAATGTAAGTCTATCTTACTAAGGTCCTTCAGAATTGTAAATGAATAAAGAGGTGCTTGATCCTTTTTTATGC--TGTagtttttgtgtcttatttaaaatgtgtaagtCTCTTGATCTTGTGTG-ACTTTCTCAAAGACTG--TCCCTGGATGCTTTGATGTAAGTACCGTGCCTATGAAACTCAAATCCTAGACAGGTGGCAGTCTTTTCATTCCATACTGGTTAGGAACAGGCTTTGGAGATAATTTTTTAATCTCATTCTCCCATAAGTGTCTGAAAGATGACAATTAAAACCACGTGAATCAGATTCTTATACTGTCCAAGCTGAATTCCGGTTGGAAAGAGAGCCCTTGTGAGCTGTGCTGGCTCCTTGACTAGCATGTGGGATCTTTTTGCTG-GATTTGCTAGGAGACAAAAGTTGAT--CTAAATGACCTCATGGGACTTTCTGCC-CGACTTATTTAAGCAATAGGAAATGTAGCTGTTGttgctaaatatattttatgcttttttcctCAAGGGATAAGGAAAGCTTTACATGCATTATTTTGTCTTGCTAAGTGAGTGAGCTAGATGAATTGTGCTATTGTGTTAGAAATATTTACCTTTACTCcaaatttct--tttgtca-tatcTTTTGGCATCTGACTGATA--TAGCAATCTGCTTTACTTCCTGT-GGATGttccaaa-------atttttttctcactctaaAATAGATTCAATTTCTAACCATTCCCTTAAATCCAACTTTTAGATAAAGAGATGTGAAT---TTGCATCCACAGTTAAC-----ATATATCTTAGACCAATAAAGTGCCTTTCTTGATGAATTTCTTAGGCAGTTTGAGAATAG-TATGTGTGTAAGAAAAGACA----ATTTTGAGATGTATGATCTTTGGATATCGCTCA-----AACTATATAGTCATTTACCTATTTATAAAATTAGTGGTGCTGTAAAATCTTCTTTTACATAGGAA------TTATTTATTGCAATCTTTTTAGGGAGGGAGACTGAAGCATAGCACAGATGGGTAATGAAAGCATGACACACTTTTTAGTAAGCTATGATTCTGGTCATCAGTGTTCCTGTCCCAATATCTGCTTTTGGCAGTATCTTATTAACAGAGAATTTTGACAACAATGCAGGTGCTTTGATTATATAACCAAAGCACTCTGA----ATCTGAAGGTGCCAGCACTTCA----CCATAGTGATTTTTGCTGAGCAGTTTC--TTCTTTAGTGCAACACATGTTTATGGTAAGGAGCTTTCTGCATCGATCCAGTTGAAAAATGagtcatttttctct-------tgatttttttttctttctgagagagacacacagacatacacagacAGAGCTTTGAATTCTG------------------ATAGTGTGCATAA-GCCTACATGCAAGTGAAATGAGTGTTTAAAACA-CTATAATGTTCACTTTTCCTACCTGTGTTGGACATGTTCTCTAAG-----TCTTCAATTCACAATCA----ACCTAATTGCTGTAGGATTGTTCAGTTTCAGTTAG------------AATTACACTTGCACGGACG--------TCTTCCAGAG-----TTTGTTCACAGAAGACTTAAGCAGAGGTCAGGCTGGCATTTCTAAGTGACTTTCCGAACAAGAGCGTA--ATTGCCTCTTTCCAGGAAACTGGTATTCATCaagaaaacttttcttttcatgtcTTCCCTGGTGGACATCAGTGGATTTATCAGGATATGGTTCAG-GATCTCtcagttttcttctctgtattatTTGCTTCCGCAAATAATTTCCGCAAATAAAGTTTCTTTGAATTGCACTG-----TTTTAAGTAATCTAACAAAGG

a score=65988
s chr3           154466996 3682 + 160039680 [encoded data, 4283 characters]
s HiC_scaffold_1 141452151 3841 + 233722169 [encoded data, 4283 characters]

a score=35225
s chr3           154482923 2385 + 160039680 AAGAGAAGATCTAAAACGTCTTTTATTATCGGATAATATTT-TCAAGTGTCTTGGAATAAATTAGAAGTGAACTTTCACCTGTCTC-TACACAGCTGAGGGCCTATAGGTCTCAGGCTTCAGGGAGCGTCCATGGCCTCTTCACATTATACCCTATTAA--GGGTGTGCTCGCAGTTTGTTT------------------TTATAGCTTAATGTTCATCATGCCA---TGAAGCTTATCAGTATACAGGGTTGGATGGGAGTCCCTCAAAGACAGAATTTATGGATGTCATTTCCTG----------------CTCCAAGTTCTGGCCAAATAAATGAGAAAGTAAATGAAAAATCAGTTGGGCTTCACACTGCCCAAAGAAAGAGAGAGCCAGTGTGTGCTATGCTGTTTCTGCACACTTGAGTTGGGGGGTTTGCGCTGGCTAAGAAATGTAGCTGAGATGGTGTGTGTTGTGCTATGCATGGAGACACAAGGACTAGATGTGCACCCTTCTGATACCTGGCAACAGGGGGTAAGTAGGGACAATTACAAACACTGGCTGTTGCAGATACTCTGAGTAGGTATCTACCAGGTCCAGACAAAACAGAAAGAAGCAAGTGTCTGTGAGATTTACACACACCCACACACACCTCACAGTGTTCAAGTCTGGGGGCCATCATGAATACTTTTATTTTTTAAATAATCCAGTAAGGTTTACAGATATACAGATAGTCTCTTTCTGGGAAGATAGTATAGTTGTTTTGTTTATAATCCAGTAAGATTTACAGATAGTCTCTATTTGAGAAGATAGTATGGATGCTTTGTTTATAATCTAGTAAAATGTATAGTCTCTATTTGGGAAGATTGGCGTGGACTAAGAGGAACTTACTTGGCAATGTCATTT-TAACTAAATAGTATTTTCAAGGAAAGTGTCCTCTTTTGGTCAT------CTGATCTTAAAAAGCATTGAATCTATGAAAATGTTTGCACAGATTTTGCTTTCCCCACTTTGCCCATGGGAAAGACTTACCT-----CCTCACATCTGTCCAG-GTGTCAGGAGGCTGCACCCTTAACCTGCACTGACCCCTTTTGAATATGAGCTGCAGATATACAGAGAAATTTTTTTAAAGTATAGTTTTACACAGCCCCCAGTTTGCTTAATGTGGTGCTTAATTAATACCATTGCAATTCCTCTCTATATTTCTGGTGTAAATAAACCTTTAAGCTATGACCAAACTTTTGATTGCACATTGGGAAAGCTAGGAAACTGT------------AGtctctctgtgtgtttctctctctctctctctctctctctctctctctctccctctgcccctctctctggcactctctctctctccacacaccacacacacatacacacacacacccacaccacaccacacacacGTTACTCATTTCAACTCTGGCATTGCCTACTTCACCTGCATGTCC-GTAAGTCTGTATAAAATCACAGTGAGTCCGTG--CAGTACTTGCTATCTGCTCTGCCAAAGTTCTGAATTAAATTCTCTCCAGGAATGTTTCTGTTTGAGTTTATTGTTTCAGGCTAACGAGTGTGCCTTTAACTCAAGGCACAAACACGGGCTGAAACCAGATTATGTGGCCTTAAACCACATAGCAGTTTTCCTGGTTAAATCTGTG---GCTGTTTGAGTATAGTGTGTATAAAATAATCAAAACTCTCTGGGGGAATTATACGTTTCTACAACGATTTGTCCCT-CATAGCAGTTCAGATC-TGCTCAGG-AGTACAGAGCTCAGAAAGCAGTTGGCTTAATTCACTGTACTCATTATAAATAAAAGTTAACACTAAACCCAACAGCTCATAA-GTTTCCCTTACAAACTGGGCTTATATAAAGCAGTAAACACAATGTAGGATTCGTTAGGTCTGGGTGAAC-CATAATATAGC--------------------------TAGAATTCAACTTGGATCAGTGCTAGTTAATTCTGGAAGCTATTAAAACATAGGG--TTATAGACTTACTGATAAATATGTCAGTTAGAAACATATTCTATGGGAACAACTCTTAATTTATGTCTCTGCATGTTTGTTGGCTTTCAGGGAGGTATTATTGATTTTTCTTTTAACAGAA--------TCAGGATTAAGGAGAGATCTTCTTATGCTGAAGTGATCATGCTCA------------------------TGGTAT--ACTTAATATATAGCAAACGTGTAT-TTGAGTCAACTTCCAATAATGCATTGTATATTACAAGGTCATTTATTTTAAAA-GCATTTGGCATGACACAATGGAAACTCACTCAGAAAGTCTGTTCCCTAGTAACCAGATGGCTTTCCTGAAAATTAGTTCAAAAGCAAAGCCATCCCATACAGCACCAACCCTATTCCTGTGCTGTTAATATCTATCA--CGTTTTCCATAGTAAA-------GATTACTGGTAAACAAGTTGTTATAATCCGGTAACTATGGAGTAATAATAAAT
s HiC_scaffold_1 141471418 2154 + 233722169 aaggcAAGA-CTAAATAATCTTTTAGTAACTGATAATATTTCTCAAGGATGTAGAGATAacttaaaagtttattttcacttatttccTACAGAGCTAAGATCTCCTAAGTCTTATCCTTTAGA-AGCCTACATTGGCTCCTCAACTTGCTCCCCAGTCATTGGGTTTCTTTCTAAGCTGTTCCAATATGGTCTATACTTCTTATATCCTAATATTAACTACAGCACACTGACATTTTCCAGGATATGGGCAAGGATTTAGGCTCCTTACAGCAAGAAAATA---GTGCCAATGCTTGGCATGTAACAGGCAGTTAATACGTATGGATCCAATAAGTGAGTAAGTAAATAGGAGATCAAT-----------------------AGAAATAGTAAGTAGGCACC--TCTGTACCAACA---------------GTTCATGCAGTGTACAAAA----------GTGGTGTACATTACACTGTGTTCGGGGAC-----------------------CTGA--------AATAAGGGGAAA-------------CAAAT------TGTGCTTCATATTCAGGG----------CCAGGATAATGAAGCACAGACAGA-------GTTTGGACGGACTCCCGATGTTCTC---CAGCACACGGGGCTCAGAGTTGGGGGCTAGCATGGGTG---------------------AATTAGGGCTGCA---------------------------------ATGGGTGTTTTGTTTGCAATTCC--------------TAGC----ATTTGGGGA--------------------------------------ACAGTCTTTGCTTGAGAAGTTTAACATGGAATGAGGAGTTTCTGTTTGGCAGATCCATTTCTAATTCACTAGAATTTTCTACGATCCTATCTTGCTTTTGTTATGGAAGTCTGACTTTTGAAAATAGTGAATACATTTAATAGTTTtcacg--tttttcttt-------ttttctttgttaatatctTATCTAGTTCCATCTCATCTGGCTAAAGTGTTAGGGGGCTTCTTACTTCGCCTGTACAGTTCCTTTCTGACTATGAAGCCCAGATGTATGGTTA--TTTTTTACATGTATGCTTGC---CTGGCTCCATTTTTCTTAATGTGGTGTTTAATTGATACCATCCCAGTTCTATTTTACATTTCTAGt-caaataaatgtttgt----ttaCTATGCTTCTAATTCAGCGCTGAGAAAGCTAGAAAATGGCTAGAACCAGGAaaatgtgtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---------------------------------------------------aaatgcagCGGAGCAGCTCCTATATATGAGGCA-ATGATACACAGTAAAACTTTGGCACTGCCTG-GTCACCTATGTGCCCTGTGTATCTGCCTAGGATCACAGTAAGCCTGTGTGCAACATTTACTGTTGATACTGCGAAAATCCTGAATTGAATTCTTTCCAGAAATGTTAAGGTTTGAGTTTATTGTTTCAAGTTAATGACTCTGCTTttcattcaaggca-aagaaaggGCTGAAAGCAGATTATGGGGCCTTAAACCACACAGCAATTTTCCTTGTGAAATTTTTTTTCGCTGTTTGAGCTtagtttgtataaaataatcaaaa--cactGTAGGAATTATAAGCTTCTAAAGTGTTCTATCCCCACAGAGCAGTTTAGATCATGTGTAGGCAGTTTAGGACTAAGAAATC---------------------------------AAAATTAACACTAAAACCAACTCTTTGTGACTTTTTCTTTGCAAGTTGAGATTATGCTAAACA-TATATAC----TAGAATTCATCAGTTTTTGCTGAACTTTTAATTTGGCTGTATAATGGTGGTAGGTAAAAAGTTTGGAATCGAACTTGGATAATTTCTAGTTTATTCTGAGAATCATCAAAACATAAAGACTTGAAGCCTTACTGATAAACATTTtggttataattttattttatg-----aaatcttaatttccatttttatatacCTGTTGGCTTCTGGGACGATATTATCAGTAATCTTTATTTCAGAGTTGTTCATTTAGAACTGAACAGAAATTTGTCTCTTTAAAAGT-ATTATGCTCAGATATGAGTTTATTCACTCTTTGCTgacataaatttaatatataataaacatatacAGTGTGTGAATGTTTACATATGcat----------atagtaatttattttaaactacAGCTTATACAGTACAGTGGAAACATACTCAAAAAGTCTTTT--CTAATTAC----TAGCTTgcttgaattttatttcaaaagcaaa--------ataaagcaaaatacct-TTCCTACAGGTTTAACATCTATGGATAATTCTCTTTAGTAAATGGGTTGTATTACTTGCTAATGA--TGTCACAATTTTATAACTACTAAATAGTAACATAT

a score=21025
s chr3           154495015 1536 + 160039680 GTTTATGAAG-TAGTGTACCTGGTA---GTTTGGTGCAAAGAGAACTCTGCCTGGGTGCCTTGATCTTG---CCTGCAGAACAG--AAGTTCTAATATTAATTGCCAGTGAC-TCTCTAACCTTCTAATCCTTGACAAC--TGGGT----GTTAGAA-TAACTTTGAATTTTCAAGCAGAGCATGGTCTTAGTGTTCT------GAATCCAGGGAAACTA---TACTGTCTTTAAAAATTAATTTACCAGGTTTTAATGGTTAAGTTTTAAGTAGCCTTTATAGAGAAGCTGG--CAGATTC-TACCTGTGTTTATAGTGAGCTGGCTTTGCTATTATGTCGGTGTGATGACAACGATGACGATGACCATTCCATCTAAACTATGGCAGACTGTACAGCAGTGTATCATTTGATGGAA-TCTTGACAAGGGGACTGGGCACACATGGTGTGTGCACGACTTTCACCTGCATCTGGTGAGCAGAAGCTTACAGAGGGCTCAGTAGTGAAGACAATTTATTCATTTTGATGAGGACCTCATTTATAACAAGCACAGGGCAAGATAAATGCAGCCCACTCTTTCATT--TCTTAAATGCTTTTACTTTTCCTTATTTCACAAAATATTTTAGGAAGTAAGATAAATGAATTGATTATGAACGATCCTATTACTTAGAAAGTGGTTAAAAT--TAGTGAAATTAGCTCTAAGTGTCATCTTAGTTGAATTCTTC-AATAGCAACCATATGAGAACATGTTTTATTATGGTGGCCATGTTCACCCCATAGAAATTGA---------------TACACAGTTTAAGAAGCTAAGGCAAATTCATCTGGCTGCAGAT-------------------------------TACATATGTGCACACA--------------CATATACATAATGTTTTACGTGACTCTCCCAATACCATGAG------CTTTATACGTACTCAGTATAAAGACTTTGACAAGGAACTAGTAAAAAAATGTATACCAAGCAATTTGTTAGGGCTATTCCATCAGGACACCCCTG--CAGTGAGGTTCCCCTTAATCAGGCCTTAGCTGTAACTTTGAATCCCTTTGTTGTCCTGGCTCTCTGGAGCAGGTTATCTTTTGATGATTCTATACCTCCTGCTTTATACATCCAGAAT-GGTCTGAAGCTATATGTGTAAAGGGGACCACATCTGCCCTTGCTCATGTGAGCGAGGC----ATCCTTTCTCACTTAGGCTTTGGACAGATTTGTCATCTCCACACCCCAGTTCAGTTGGAGAAGAGTAAAACAGGAAGAGACTTTGATTAAGGCCAGATATTTCTTACTTTTAAATAACTTGAAAGAAATTGAACTTGGAAAGGGGAGAAAATGTCATCTATT-----GGCGC-TTTCAAAGAGGAGATCATGCCAGA--------CAGCTGGGGTGTGCATCG---ATTCATCTTAATCTCCACTTGCCTTTATGGTTGTTTGTTTGGTTCTCTTATCACCATTAGGAAGTGTTGTGCTAATGGTGATAAAAGTTTGTCTTTTTACTTGAAGAATACTTTATTTAGATTAACATTGCCTTGATAGAATTTCATTCCACATCTTAATACAATCAGGGCATTCCTGA--GAATTTATTTATTCCTTCCC
s HiC_scaffold_1 141491955 1526 + 233722169 GTTTGTGAAAATACTGTAATTTGTAAATGATTAGTGTAAAGGAAATTCTACTTGGTCTCCTCAATCTTGGCCACTTCCGGCCAGGAAAGCCTTAGCATCCATTATGAGCAACATCTCTAACCTACC--TTTTAGGTCACAGTGGGTAAAGGTTAGAAGTAACCCGCCCTTTTCAAGTCTAAGATAGATCACGTGTTCTACTTCTGTACTCTGAGAAGCTGCTTTACTATTTTTGCACTTTAA------AAATAGTAACTATCA----TTA--CAGACTTGGTAAAGCAGCCAGGATAGATTCCTACCTGTACATGTAATTggctctttttattattattctttta-----------aagaccAGGCCCAGCACATCTGGACTATGGTGGAATGTTTAGAAGTGTATCCTCTTAGGAAAATCTTGACAGCTGGATTTGGTGCACATGTTACACATGTTACTCTTACTTCCATCTGGTAAACAGAAGCCGAGTTAGGACTCACATGGGAGAATGATTTATGCATTTTTGTGAAGACTTCATTTATAACATGCATAAGGCAAGATAAA-GCTggtaagttatttatttattttgaatatttctacTCTGCCTCATTCTCCAATG-ATTGGAAAAAGTTAGGTAA--GAGTTGA--ATGATCtagttaattatttaaaaatatgttggaATCACAGTGAACTTAA--CTACATGTTAATTGAATTGCATTTTTCAAATAGAATTTATATGAG---------CTTTATGTCACCTGTGTCCActcagagaaaattaaataaagatttttttgtgtgtaactTAAGATGCTAAGGGAAATTCCTTTGGTTTTAGAGTTTTGACGTATAAATACACAtgaaatgtgcatatatatgtgtgcacatgtttaggtatatgcacatatataa--ttttacGTGAGTTTCCTGAACTTTGGAGttatccttttttctttgctCAGTATGAGTGGTTT---AAGGTGTCAGGAA-------------------------------ATCACACCAGAACACAATTGAATAATTGGGTT--TGTTAGTAAATTGTTGACCATGACTCCTACTCC--TTACTGTCTTG---CACTAG-GCAAG-TGTCTTTTGGTGATCCT-TGCTTCCTGGTT--TACGTTCAAAACAAGTCTGAAGC---ATGACTTA--GTTACTA----TGAGTTAATTTATGCATGCGATACCCAAATCCTTGATCACTT---TTTTTGAC-GTTTTATCATCTCTATGACCAGGTTTGTCAGGTAAATAG---------------------TTTAGAccatttatttcttgcttttgaaCAACTTAAAAGGGGTCTGACTGTGAAGAGTCAGAGAA-GACAACTGTTCCTTGAACACTTTTCAGAAAGTAGAACAGATTAAAGCCCCCAGTATCTAGGATATACATGGCATGTTCATCCTGGTCTGTAC-TGTGTTTCCTGatgcttcctt--tcctctttctatcATTAGTGAGGGATGTAGAAAAACTgtcaag-------tttttaaattaaagcaGA-TTAATTTAAATGAATTCTGTTTTGAGAGAATTTCATCCCCAACCTGAAAATAAT-GGATTATTATctactgtttttatttatcttttccc

a score=33465
s chr3           154506496 1510 + 160039680 TTTTACATATTT-ATTCTCATCATGTGATGACCCTAGTTCTCTGCATCCAGACCTCATCAA----AGTAATGCTTAGCT------------------TTTGAATAAAAGAGTGAATACCAAAGTCCTA----------TGTGATATAGCAGGCTCTCACAAAGTTCTCTCTCCTTTCATGTCTTTAGCAAAAATCAGTTGAAATCTG---------CAGTTTTCTATCCTAAAGAAAATTGGATGTTAGGTAAGTATCTTTTGACGAAATTACCTTGATAATTGGTTGCCAGGTGTTTACGCCTATATTGACT----AGTGACCAAATTCTTAGGTG-GAGTCAGGGTTTTCAGTATAGCAGACTTCCAGCTGTTCAAAGGA----------------CTATGTAGCA--------------CTTCCTTAAGCTGGACCAGCATCCACGAATCCTTTATGATGCACACTGTTTAATGAAAGTCCAGTTTGTATTTTAATGACAATAGTGATCTCTAAAACAGATAAACATAAAATAAAAAAAGACTCTGGAGGCCCGTTGAGAGAAAGCAACCTTCCG---CCCTCATGTCCACGAGCGCGCAGCAGCCAGCCTGATTTTGAGCCATTACAATCAGCGAGGTACTCAAGCCCTTTCTCCATCTGCCCTCCGCAGCAGCATC-AATTTTCTACCTCTTATTCCCGAGGTGATCTTGAGAGAATTGCAGAGAAGAAGACAAAAGCTGTGTCCCATTAT-----CAGACGGCTGCAAGGATAGGTTATCTCGAGGGAAGTTGTCGCGTCT----GCTTCAGGCTCTGGTGGAGTTCACAGGTGGCTGTCACTCTGTCTGGCGAGGCCAAAAAGCCTCCTGAAATCTTGGCCAAATTGCTTTCTTCACTTACCGTTAAAAGCCCAGGAGCTGAGAGTCTTCA-ACTATGCACGCTTGGGATTTCCAGCACGTGAAACTCTGGCCTGGACAGAAAATCC---TTCATCGAGTCTGTCCATCTAGTCTCTCCCTGGCACCCTTTTGTC-CTCCAGCTCTGACAGCCGTCAGATCAATCCTCCTAAGACACGTTTTGTATGAAGTCATACTTGATTTTAAATTCTTTTACTTTCCCATAGTCTTAGTACAGCCTGTAGTAGTA-AAATCTGACC--------------------------------GTCCTAAGGTGTCTGTCTAGCTTTTCCCTGGTTGTTTTCTTGATCCGTGT-AGGACCAGCAGCAT-GTGTAGACCCTGCTGGGCTTTCAGATTCTCAGTGGTT--CCTTTCTGT-CTCTGGT--CATACAAGAGTCTTTTAACTCTTATCTGGTAATATTTTGCTTACATTATTCTTCATGATATTTAACCTGAGTTCCTGTACTCAGGAAT--------TCCTCCTCTAAGTGGTTCTGTTTTATTTCGT----AAATCGAAAGACAGTAAACCTTA---------TCTTTCTATTCCTGCAACATGCCTCTCCTATGGCAGGGTATAGAGAGGCAGTTATCAGGATTTTAGAAATAAAAGCAGGAATTTAGTGGAGGAGAGCAAT-CAAACACATATAAACTTATCTCTAAAAATAATCTTGGAATCTAGTC----ATTACCTCCTTTAATATTCAAAACAA--CCTAGGAA
s HiC_scaffold_1 141494881 1630 + 233722169 ttttacatattttatttttgtcatgtgatA----TTATTCTCTGTGgctgtttttcctcatttatgGTAACATTTTGCTGGCAGGGCTGTTGTGAGATATGAATGGAATAATATGTACCAAATACCTCCCAAAATACCTGGTAAACAGTAGGCTTTCAAAATATTTGAGTGTATTTTGCTCCTTAAGTAAAAATTAGTTGAACTTTAATcctctttctatattttattccAAATAAAAATGGGGGCTGGG-AAGTA-ATCCTACCAGAATTACTTAGAGAAGTGGCTGTATGGTATTTATTCCCATATCCATTTCACAGCAACCAAAGTTTGAAATAAGAGTCAGTAATATCTTTGTTACTG-CTTTCTGATCATCAGGGAAATTTTGACATTCTTATTTGTGAAGCAAAGCAGTGTAAAAGCTTCCCAAAGCCTGACCAACACCTGTCACACCTTTGAGATGTGTATTGTTTAAAGAGAGTCCAGTCTGTATTTTAATGGCAATAATGATctctaaaacagg-------------aaaaaagattcTGGAGTGCTATGTAGAAGAAAACACCGCACATGCCCCCTTTGCCCGGAAGGGTGCAACCGCC---CTGATTTGAAGCCATTACAATCAGCGAGCTACTCAAGCCCCT-CTCAGCCTGCCCTTTTCAGTAGCCTCCAATTTTCTACCTCTTATTCTTCAGGTTATCTTAAGTGAATTGCTAGAGAGAAGACAAAAGGTCCATCCCATTATATGCCTAGCATGCTG--AGGCCAGGTTA----AATGGGATCCCTAGCACCTCAGCATTTCACGCTCTGGTTTAGCTGACAGGTGGCTGTAATTCTGTCCAGCAAGGCCAAAGAGCATCTTGAAATCTTGGTCAAAGTGCTTTCTTCACTTACCCATTAAAATCTAGGAACTTTGGAAGTTCGTACCATAGAAGTATTAGATCTGTATCAC-TCAGACCCTGGCTATTCCAACAAATCTGCATTCTTCTCCTATTTCCATCTAATCTCTCTCTGGCACTGGGGTTTCTCTCCAGTTTTGATTGCTGTCACAGTCAGCTTCCTAAA----GTAGCACCCCAAGTCTGACCTCGGTTTacatttttttgctttctgttaaTGTT-GTACTCTATAAAGTGGCACAAATCTACCCAGAATTTTTTCCTCTCATTGTATTCTTTCAGGATCCTCATAcatctgggaaatatttccctgGATCTTACCAACCCCAGAGTCACTGCCAGAAGCATGGTGTGGTCTCcctttgcttttgaaatccacAGTACTTGGTCTCCCTGCACCCTAATTGCATATCAGAGACCTTTTATTC-TGCTGGAAAACATTTTGCTTATACACATCTCCGAGACATGTTACCTGTATTTCTATAGTTATGAATCATGAACACCTTTCCCTAGtagcttcttctttctttttctttgaaaacaaaaggCAATAATCCTCATAGAATTATTCTTTGCTCTCTGGACACGTGACTTTACTGCAGCAATTGAAATGGTGTTAGTTATCAACTTTtcagaaagtaaagaagaaaattggagaagaaaatatatatacatgtgtataaatttatctataaaaatattc------TCTAGGCATCAATTATCTCTTCTAACCTTTGAAGCAAGCCCTATGAa

a score=62399
s chr3           154509022 2940 + 160039680 CCCTCATGAAGCAGCACTAGAATTTCCCGTGCACTTGCCTGCTTTTTTTCCCTTTAGGCTaggagttgacaaactccaacaaagaactatactgtaaatgttttaggttttgcaagtcataatgtccaccccagctactcagctctgttataatagcatgaaagcagccaaagacttcatctgaccaatcaatgcatcatattctaataaaactttacttatgaaatgtagccagtgggttga--atttggcttacgagAGGAGAATTAAGCATCCTTT-----------TATTGTATCCTGACTATTTTGCACAATAATGTAGACATTTGTTTAAGGAATCAGAAGGACTTTATTTATCTCTTCCTTGCCAGGAAAATGGAGTTATTCAAGTAAT-----AACACAATGCTATGTGACTCAAAAGTTACTTTCTGTCCATTCCTCCAAAGCATCTTACAGTCCTTTTAA---GTTTTTATTTGCTCCCATTTTAGTCTACCGTTCCTTTCAAAGGCTCTACTCAGCTTCTCT-ATGCATCCCGAGTAGCGAGTGGCGAGGTGCTTGCTGCAGACATGCGGAGCTGTGGTTTCCTGTGTGCTCTACTG-CTGAGAACAGGAGC---AAACACTGTTCCCTCTGTGCCTGCAGCAGAGACAGAGTTGCACTGAGAGCAAGCTCATGCCTTGTTGATCAATAAATCTGCTATTTATTGACTACTCCTGTCTTTCCGCAGTGCACTGACAATGGG-AAATACTGGCTTATTTGAAGAGATATCATTTATTTAGATTCATTTAATGGGGTTTCATGGGGCTTCTCAGACATAGTTATCTACCTCAAATTATGAAGGGGAAAG-AGGAGGTTCACAAGGA-TTTGGCTTGTTCCTTTGCTAGGTAATGAATATAACATGGCG--GGGGTAAACAGCTCTGTCTCTGGCAGCCGCGTCTTTTAG-CAGACATCGTCAAGATGTGCAGGCAGACTAGCTCAGATACCTGAACTAATCCCTGGGAATTCTCATTACTCCTGGGAATATTTGAAAGGAAAAGAATATAACAGGAGAGATGTCTG-ACTTTTAAAGTGGCCTCAT--GAAACCATAATTACTTCCACTCTTC----------------CTTATGTAGCAATAGGCGATTTTTAGTTGGAATTGAGTAGTGCCAAACCCCAAAGATAG---------------CACATACTATTAACTGGCCACTTGGGCCAGACAGAGGG---AATAAGTTTGTCTTC-CTTGTGCATAGGTCTGACACAGA-----ACTAATAGAG----CATTGAGACGGAGGCCCTTTTCAGGGCCAAACAGGCTTTTGACTGTCTTTGAATTGTAGTAATAGTCTGTTGCATATT-------------GAAGGTA-----AATGCAGAGC-------------------------------------------------------------------------------------------------------------------------------------AAAGAAAGAGGAAATGGTTAACGAGAAGCGGAA-------------------GGAAATAGAAAAGTGAAAACAAAGTCTGGGACACAGCAATTAT--------GCAGTAAAATAA---------------------ACATGAAATGAGAATAAATTATGAAG--------------------------------GAAGTTCATTTTGGTTTC--TTTaacattcttctagactagatagagttagttattccccttttacattcaaagaaattggcctgcaaag-gattaagtgatttaatcacacata----gaagcagagaagcctggccatggatctaggctgttctaattctaagAGCAGATTTCAAATGTAGGAGGAATGAATCAGATTAGAGAGGATATTACTTTGGGCT-------------------GAATTTCTTCA---TAGTAATTAGTATAGTCA-TGACATTATTAAAGATAGAGATCAACTTGTAAAAAGCAC-ACATTCTTACCCTGGTCAGACAAAGATATACAAATAAGCATCATGGTGGTGGGT--ACTTCAGTCTATCTGTGG-GCTGAAACGTAGCC--CAGGGATTTCTTTTAGGAT-CCCCTACAAGACACATGGATACA--TTCTTCTGTTTGGTGTTTAAAAGTTGTATCTCTTTCTACCAGGTTCAAGTCCCCCCTACCCCCTCTCCCAGCCCCACATCCTGT-------TGGTCTCCCTTTTCCAAA-GATGGTAAATTTCCAGGCTGACAAGGTCTCAC------ATCCCACCTGCTTCCCTCGGTGTGACCCAGTTCTGAATCCC----------ATGTCGTGTTTATTTAGATATGTCTTGGAAACACTGCAAGTTTGTGTTCCTGTTTTCTTCACTTGCAAATTCTCACTCAGGATACCCATACA-AAACTGCT-CTTCACAGCTATGTAAACAATTACCTAACCACAGAGAACATTGCAGATACAAATCCCAGATTCAGGTATC--TATAGTAGGCGGTGTGCTGGGGCTCA--CATCCTGGACTCT-CTGCCCTCTCCCACATGGAGATGGTGTTCTTTGTTTGCACAATACCTTTGTACTCACGTTTTCTGCCCTGTCGTCTCAACACGTGGCGTCTGTTCCTCGGGCTCCCATCAATCACAGAATAAGGAATTCTTTCATCTTGTGGTAGATATTTAACATTTGTCTTCTGATATCTTT--------AGTCTGTTCCTCAGTTCC----------CTGGTCGCAGGGAAGGG-TGGCCTTGGG-TGTTACTGTCATTACCACCTTTGTCTGCACTGCTTTCTGCAAGGTTTTCAGGTCATTCCTGGTTCGCAGTCAGCGGAAGCATCAGTCTGGAAGGCCTTGAAAGTTATGTAAAACTTGCAAACTCAGATGAAAATATTTT--TTTCCCCGAAAGGCAAAGCAGTGACCAGGGGAGACTGATGTGGGTGAATTCCAAGAATAATAAATAATAAGTGTGTTCACGGAG-ACCAGAGC---------------------CTCCCCTCACCCGCTCTCTGGCCTCTGTCAGCATCTCCACATTGCTGCTAT-----TCCCTGTAGAACTCCAGGATGGTGGGCATTGGTTCCTAAAGGACACGTGTGTTA-AAGT-GGGAAGCCTGGATTCACGACATGCATG-----------GATAAATCTCTC--AGTCGCCAAGGTTATCTTTCCAGCTGTACAATGGGACCAATGAGTCCTGGTGACCTGTGTGGTCTGAGAAAGGTAGGAAGGAGAGAAAGCAGAAGCGATGAGAAAA
s HiC_scaffold_1 141501981 3249 + 233722169 CTCTCATCAAGCCATATTATAATTTCCTTTACTCTTGTCT---TCTTTTGCCTCTAGAGTAGGGATTAACAAACTGTAG----GGGCCGGACAGTAAATAGTTCGTGCTTCTCAGGACACATTCTCTGCAGCAACTACTCAGCTGGGTCATTATAGAGTGAAAGCAACCAGAGATGATGCATGACCAAGGGATAGA----GGCCcaataaaactatatttataaAA-GCAGGCAGTAGACTGGGGATTTGCCTCA--------GATGTATatattctctccctctctcagtaTTACATACGCAGCTCTTAGCGCA-------------TTCTATGAAACACAGTAAGAATTCCAGTTGTTTA---------AAGAAAATGGCCTTATt---gtgatcagaaaaaaaaaagttgtgtaaCTGAAAAGTTACTTTGTGtatattctttcaaaataattttcaggcttagaatattgtttttctttgctcccATCTAAATTTGGTGCCCGTGTTAATGGTTCGATTCATTTTCCCTTATTTATTCTGCACA----------------------CAAACACACGACTCAGTTGTTTAAGATGCACTTTCCTGGCTGTGAACAGGAGTGGTAAacactgctttctctttctgtgcctcTGAGCTGGAGGT-CCCTGAGATGAAGTGTGTGCACTGTGGTTATTGGAGTCTGGTATTTATTGACCATTCCTGTCTCTCTGCAGGGCATGGAATTTGGGTAAATGGTGATTCATGTGCAGAGTTATCATTTATTTAGATTCATTTAATGGAGTTTCATGTGGTTTCTCAGCCATGGTTTACTTCCCCGAATTATGAACGGGAAATCAGGAGGTTTACGAGAATTTTGGTTTGTACCTTTGCCAGGTAATGAGTAAAATATGGTGTAGGGGTGAG-AGCTGTGTTTGTAGTAGTCACATCTTTTAACCAGACATCGTCAGGATGTTGAGCCGGATTTGGTCAGATGAACAAGTTAATCCCTGGGAAGTCTCATTCCTTCTGGGGttatttgaaggaaaagaaacataatagaaaagatccttgtatttttaaagtgaCCCCACAAAAAAccataattatttccatttttcccataTTTAACCATCTCTTACGTAGAAACAGGAAACTCTTAGTTGATTTTTGGTATCAATCAAATCCAGAAGTGAAGGGGATTTAAACTCTATCTGCCCTTAACTGACCACTCAGGCCACATGCAGGGGAAGATGGGCTCACCCCCACTGGAGCAGAGGTCTGATGCTGAGGGCTGCCTGAAGAGCTCACCCTCAGCTGGAACAAGCTCTCAGGGCCAGCTGGGTTTTCAGC--TCTATGAACTGTAATCAAAGACTGTCATCTAGTCTAAGAGAAgttagaagataacaagagtgtagagtgaaaaagagagagagggagagaacggtggaaggaaggaaggaaggaaggaaggaaggaaggaaagaaggaaggaaggaaagaaggaaggaagggaggaagggaggaaagaaggaaggaaggaaggaaaggaaaaaagaaaagggcaggaggtaaaaagaggagggaaggaaggaaggaagaaaacggaggaaggagagggaagggaaggaaggaaagagaggaaggatggagggaggcaggaaaagaaggaagggaggtgGAGGggagcaaaaggaaagagaaagaaagaaggagtcCCTTATCGGATGCTTCATAGAGTAAattgtgaaatatatttttatttcagttcagcAACCTTCTGAAC----TGCGATTAATAATTCTTCATTTGCAAATGGAGAAACTGCTTTTCAGGGAGACAAAGTGAGTGGGTCACACCTGTACTGTAATGGGGAAGCCAGATTCTGAGTCCAGCTCTTTCTGATTTTGGAACAAAATGTAAGATATAGGAGGATTGCAACAGCT--AAGGAGACGCTTccttggcatttttttttctctttcaatggtatttttttcctttagtaatTAGTGTAATAACTCATATTATTCAAAGTAGCAGTCACTTTACAAAAAGCACAACACATACACCCACTTTAT----AGTTGTGAGAACAAACA----GTTAGTGAGTGGACTT-AGTTTGCCAATGGAATTAAAGTGCCACCGTCAG-----TCTTTTAGGATGGACCCAAGAGCTGtacaaatagatttttttctgttttgaatgtAGAAGTTCAAT-TTTTTCTGCAAGATTTAATT--------------------------CATGGTGTTCTTCAATGGCCTCTTCCTCCAAAACGGTGGCAAAGTTGTAGGC-AAAAGAGTCTTCCACGGGGATGCCACCTGTTCTACTTGGCATAAGCTCGAGCTATGCCACTGCTGCGTTaatattgtgtttatttatatatgcCTTGGAATCGTGTCGAATTTGCATTCATGTTTTCTTGCCTAGCAAATTCTCGCTCATGATATCCTACCAGAAACTACCACCTTACATTTATGTAAACAATGATCTAAGCGTGGAGAATGTTTTAGATACACATCCCAGACTCGGATGTCTGTGTGAGAGAAGGTGCCCCAGAGCTCGCCCACGCCAGACCCTGCTAAACTTATACATATGGAAATA--CTTCTTTGTTTGCATAATACCTTTGTACTCacgttttctgttct---gtttcaacACATGGAGTTAGTTCCTCAGGCTCATATCAATCACTGGACAAGGAATTCTTTCATCTCCTGGCAGATATTTAACATTTgtcttcacattttttttcttcatgatgTTCTTCCTCCATTTCAAAAGAAACACTAATCCTGGAGAAGAATTGGCCCTGGGTtgttattgtcattattattgttatccATATTATTTTCTGCCA-GTTTTCAGGTCATTCCTAGTTCGAAATCAGAAGAGGGCTCAGACTGCAGGAAGATCAATGGTGAGTAAAATTTGAAAGCACAGAGTAAAACACTTTGGTGTGTTCACAAGGAAGACCAGAGAGAAGGCAAGGGGGATTCAATTGAGGTCTAAGAATGGC--------AGTCTGTTTGCAGAATGACAGAACTCTGAATCAAGTTTTAAAACACTCAGTTCACCTGTTCTTTGGCCTCTGTCATCACCTCCACAATATCATTATTATTCTCTCTTTTGCGAGTCAGGGTCATGGACATGCGTGCTGAAAGGACAGATGAACTACAAGTCAGGGACCCTGTGTTCA--ACATGTAAGTTGGCTGCTACGAGAAAtcacttaaaatctttgagtttgtttcaccAGATGTAAAATGGGATCAATGACATTCAGCTGCCTTCGCCACAGGATTAAGATGAGGTAGAAATCTTGTGGAAGCATTTGGAAAA

a score=20025
s chr3           154525400 2490 + 160039680 AAAAAATTACTTATGAAATAAGTAGTGAACTTCATCATCCACT-CATTCTTAGGATTCTTCCAAATGATCTCCA--TTTTTGACATTTGTGAGGGGCACCAGGGGCTCCCTCTTGACTTTCTCTTCTT--GTGCAAAGCTAGCTTT-TTTGGGAGACTTGTTCTCTTTTGGAAATATTCAATAT-GCTTTCAGAAAGAGCCTGATT-TCCCCGTGGAGCTGCAGT------AACCAATATCACCGTGTGGTTC--CTAGTACTCGAGAGACACAGTCACTACACGCCC-TGCAACGCATACCTCACCTGGTCTCTGCACTAGTT-AATGGGGGAAATCACATTAGGGACTGAGAGCGTTGGGTTGTAAACC------CC--------AAGAGCTGGAAGAGTCCTGTGCAATCTGGTTATTTCtattttttttttattttaaatGTGAAGAACATGAACCTCCCAGCGCCACAGCCACAG---CTTTGGCCAGAATCCCTTACATAGCAGGCTCACTTCCTGGGCTAAGTCCTCATCCTCTTTCATTCAGTCTTTATCTGTCCTCTTCACACCTGGCTACTCTC----------------------------CTTGG---------ATGCTGATTTTGGGTTCCAGGAAGGGGTGGTTTCTGAGCTCTAATAATGGAGACTTTTCTCAGCATCTGCTTGCCTGTGCAGTGGACAGGGCCTGAGCTGGGAATAAGCTGTGGTCCTGGTCATCATTGTTTGTTTTGGGCCTCCAGGACCATTGTGCTTTATTGTGTTGTGGAAAACAATGGGTGGGGTGG----GGTCTTTATTCACATCCCAGCTGTGTCACTTTGTGTGCTTTTTTTGCACATGCCCTCAGATCCTAGTTGTGTCATATACCTGTGCCTTTGGATAAACTTCTTAAATTGTCCTAAGATTCCATCTCTGCCCTCCAGAAGCTGAGTTTCATAAATCCACAGGGTTCCATGCTGATCACGAGGCATGGCGTTCCTAACTGTGGGAAAGCACTTCATGGCTGCTCTTTCTCTCCCCGCTGGTGCTCAAGCACCAAGTCAAAACCAGAAAACTCTCAGGCACTCTGAACCTTGTGGCTTTCTTACCATAAAGCTCATGTCAGTCTGTCTAAGAGCTATATGTGAGACAGACAACTGAGTGGCCACTGCCCAGGTATCCTTCCTTACCATAAAGCTCGTGTCTGTCTGTCTAAGAGCTATACGTGAGACAGACAGCTGAGTGGCCACT-GCCCAGGTATCCTTCCTTCCACAGCTCATAGCAAGTCCAGTGGCAGTGTGG-ATAGAAGTCTTCTAGATGGATTTTTATCCCCAGCTCTACTCTTCCTCAGCTACCATCCCTGCCGTCTTCCC---CCACTGGTAAAAGTGATGATCTCTGCC--ACAGTCCCCAAGTCTTCTCCATTCTGCCCTCTCCTGGCTACCGAGTGTTCTGTAGCCTTGACCACTGCTATCAGAACCTGCTGGCAATGTCCAGTGCTGAAGCTCCCGGGTGCAGCGCCTGTCAGC-ATCTCAGTGAGCTCTTGTCATCTCTGGTTCCTCTTCCCTGCTGCTGCTTTTAGCAGGACAGGGTCGCTGCTCTTGCCGCTGGAGTC------------AAGC--CTACCCCTTACCTGATTTCTAAGGCT----------ACCCTGC------ACTTGAGACACAAGCTTTTGGACTCTTTTTTGAT--AGCT----ATTGGATAAA---------TACTACCAAAGAGAGTTCCATGAAC----TCAGTAACACCAAGCCAGTT-GTGTCCGGAGTAGGGACTTA-CAGGTCAAATTCAGCTCCATTCTAGTATCAATTCAAGATCATCTTAGTATCAGGTCAGACACTGATTCAGTCTCTAAAT---GTCACTAGA------------------------AGGACAAAGAAACAAACAGCAAGTTCTTATCTGTG--GGTGACTTGTCACAAGTGGGGGTCCATGTTCTTTAAGCTTGGAGTTCAGTGGT-GATTAAC---------------TATATAGCTACTGATGACTCGGGG-------------------GAAGTGACAT-TGTGGTTGTGTTGGGGACGATAGCA-----------TCTTCAGACAGAAGGATGCACCTCAAATCATAGACTTG---GGGAGTGACACTGCACCATCAATTCCTAC-------AGTTTGGACTGTTCATGAACAGCAGCT-GGTGACAGCAATTAGTAACAGATGGCAAAGAGCACTCACTGTACATCCAGTGATCTCTCTATAGGATAATTTATGAAAGATTACACTTAGAGTAACTATGCACATAGAAACT-----GGCTCTCCATTT--TTGTTGGGTTTACCGATAT----------GGAAGGATAAACAGAGTA----------CACTGCCAAAGACATGTGAGC----------TCAGCTATGATGCCA-----------------------GACTCTGCAAAGAACAGGAAGGGAATCCACATACTATATCCGACTTCCCGGGGCACCAACCTAGAA-ACCCCATCACCCTGGGCTGGAAGTCCCACTGAGTGC--------------------TAGTGAGGAACCTGTGGGTAGACACACTATGTGCTGTGATGTTTTCATTCAAGTGTGATT----------------ATTAATATTTAATGTCATCTGTAGGTAAACCATGTGTCA-TTCATTCTAAGCAAAGATATGAAACA-TTTACTCCATC-TTTGGTTGTTACACATTTTC
s HiC_scaffold_1 141516874 2488 + 233722169 AAAGAATTATCTAGTAACTAAGAAGTGAACCTGGCCTTCTGTTTCATGCCCTTCAGTCTTCCAAATTGTCCTCTGTTCTTCGATGTCTGTGAGG--CGCTTAATGCACCCTCCTAGTCTACCTGCCTTAAGAGAAAGGTGAGCTTTCTTTGGGAGATGCATCTCCCACCCAAAGCTGCTGGTGTCAGCTCCTGAGGGAGCCTCATCCTCCCTCTggccctgcagtcccagcacccAA---CACTGCTTGGTTCTCCCAG------------ACAGCCACCATCCTCCCATGCCACCAATACCTCACCTGGTTCCTGCAAGCGTGGAACAGGGAAAACCACATTTGGGAGGAAGAGTGTTGGGTTATAAGCCGAGGGGCCGGGGTGGGAGGAGCTGGAAGAGTTCCAGACactctatttgtttttatttttt----attttctgtgtgaaaAGCATGTACCTCCTGGTACCACAGC-ATAGATGCTGCTGCCAGAACTCCTGAGGCCCTCGCTGCATTCCTGGGGCTGAATC----------TCAACTCAGTAATTACCAACATGCTTTACACCAAACTGCCTTCAGAGCAGGGGGCCGGCAGGGCTCAGACACCTGGTCAGCAGCTACACAGTTGTTGCGTTTCAG----------TTTCAGAGCCCAGAGCCGGGAGACTTTGCTCCACATCTGTTTCCCTCTGCAGTGGACATGAGATAGACAGGGAGTGGTCTTCCGTGTTTGTGGTGATTGTTTGTCCTGGGCTCCC-----------------------TGAGGGCAACCAAGTTTGGAGTTGGTCAGATTGGTGTTTAAGTCTCAGCTCCATCACTTC-----CCTTGTGTGCAC-----------TCCT---------------------------GTAAATCACTTAAATCTTTCTAAGATCCA--CGCTAGTCTATACAA--CGGGTTTTATCAATTCAGGATGTGCACCACTGATAAGAAGATCCAG-GTAAATAATGAAGGAAAGGAATTCAAGAGATGTTCTTTCT-------CAGTTGTTCAAGCCTCACGTGA---------------CAGACACT----------------------GATGGAGTTT-CGCTTGTTCCTGGAAGTGCTAT-----------------------------------------------------AGCTC---------------AGAACTGTAGGTAAATGAGGCAAC----TGGTCATTCTCCCACACATCCTTGTTTCTACAGCGCTCACAAGTTTCAGTGTCTGTGGAGTACAGAGATCTTGCATATTAGTTTTTATGACAAACTCCATTctgctcaatccccagcctctgccacCTTCCCACTCCTTTGG--AAAGTAGT--TTTCTGCCTGCTTGTGTCGACGTGTTCTCTGTTCTGTCCACACTAGGCTGAT--GTGTTCAGCCACAGCGGTTACTGCTGTCAGAGCCTGTCACAAATGACCAGCTCGGAGGTG--CAGGTGCTGTG-CTGTCAACTAGACTAATG-GCGTTTGTCATCACTTCTTTCACTT-CTTGCCACTGCCTTTATCAAGATGGTCCTGGAATTCCCATCACTGGGCTTGTATGAGCATGGAAGCCTCTGTCCTTTAGGTGGAGCCTAGATCTGGACTTTAGAACTCTGCAAAGGAACTGAAGACACAAGCTTTCAAAGACTGAGCTAATGAGGCTGATGAGTGTATAAAAGATGCATTTACCTCCCTAGATTGTACCTTAAACACATTCAGTCTTGTTCAACCAGCTGGTACCAGGAATTGGGTCTGAGCATCTAAAATCCAGCTCTTTTCTACTAAAACATCTTTATC----TGGCATCAGTTGAGGGATTAATTCAGTCTCTAAATATGGTCCCTGAATCCCAGGTGCAACTGACCCATCACGGCATGTGGAAGCAAATAGCAGAGTCTCA-CTGAGGCGCCCATTTATGGCAGGTGCAGGT------------AGTTTGTGCTTTCCTGGCAGGTTAACTCTCTTACTTTGGGTTATATAACTGGGCATG-CTCTGGGTTTGGGAACAATTGTCAATGAAGGGAAACGTAAAGTTGCGTCAAGGGTGATAGAGAGACTTCAGGCTCTTCAG-------------CCCCAACTCACAGACCTGCTATGAAATTGCACTGAACAAT---TTCATATCTGGAAGATCTTGGACTATGCA-------CATCTAGGTGGTAGCAATTCATAGCAAC---CTTGGAGCATGGGCACCAGACTGGAAGA-------ATA-AAGAATGCACGAAGGATTAAGCTT----TAAGTAGAAGCAGAGAAACTTATAAAGCTCTTCATTTAATTACTGAGTGCTCTGAGAGATACAacacaggaaaaacaagaaaaataaaacaatttgcaCTGAGAAA-CCATGTCAGCTACTTGGGATTTAAATACTATACCAATACAATTTATTCTTCCAACCAGGACTCTTTTGAGAATGAAAAGGAA---CA-ATATTATA----ATGTGCCCGGGCACCAACTTAGAACACATGATCAGCCAGGGATG-----TCAAATGAGTACAATATTTCCAATTTAGAAAATAGTGAGGATCTAGC-AATAGTTACCCTGCAT------ATATTCCCAC----GTGTGACTCAAAATTCACTGATTGATTATAGTTTAA--TTAACTGTTGGTCAACTATGCAACACTTAATGCCAAGCCAAGATTCAACTCAGTTCAATGAACCTTTTTGTTATCACATATTTTC

a score=78658
s chr3           154528699 3028 + 160039680 CAAATTTCACATAGGGAGCCTTGACTCATTGGACTATAGCTCAGAGACAATACTTACC------AACCCTTCCCCCACTGTCTCCCTCTGTGTGTGTGTAAG-TTGTGTCATTGTGAAAGATTATTTCTGCCATTTGCATACAGCATGATAGATGATAATTTGAGAGAGCTGAATAAAGGCAGCGCCGTTCCAATGGC-GTACTACAAAG-AACACTTTGCTTTTGGTTTTGAGAGTTAGGACTTTGTACGAAGCTCAGC----ATATGGCGTCC--TGCCTCAAGTCACTTA-TTTTCTTAGCTCAGTGGATGGTTGTTCTTCTGAGCATCTCCTTAAAAGTCAGCCATGGATATGACAGATGGAAAGACAGATCTCTGTGTGCATCTTTGGGTGCCTGCAGCCAGCTTACAGGAC--------------------CCTTCCTCACGTACTGAGGAATGCCTCTCTGC--ACGCATGCATCGCTGGCATCCTGCCACTCCTCAGGCGG-----ATTCCTCATGGGCCATGTCCTTTCTTTCCCATTTCTAATCAGGGTCTGATTGGCTTCCTGGTAACTTGACTCTCCAATGTGTACAAC-------ACAGCCCACAATCCCCCACCC---------ACCTTT-TCTTGAAA----CGGAATTTTTAGAAATGCTGTAT-TTTTCCCTCCTAAAAGACAAGGGGAAAAAAT----------CAGAACTATGGTCTTTCATGATTTATTTG-----------TGGTTAAGTAGAGCCTGCTA------ACATTGTTAGCTTACGGCAGGTTGATCTCTGTCCCCTGTAA-ATGTCAGTGGCTGGCTGGATTCTTTTTCCTTCTGGATT-TTGATAAGAGAAACCACTGTGGTATGGCAGTGAGTAAAGAAACTA---CTTTTTGGTCTACC-AAGATCAAGAGTAATTATACAAAAAGAAAAAAATGCTGTGTgaggcagtatagatgacagataagaagatttgctgttcccacagaggaccgtgtggctcccagcactcatgtcaggtggctcacaatcacctgtaactccaactacgggggatctgacacctacctctagtccttgtggtgtgaacatgaatgtacccacacatagacattgaattgggaataaaGACCTTAGACCAGAGCCTCACCCATACAATGGGAAGCAAAGATAGAAAGTTCTGTTCCTCACTTATCACTAGTCAGGAAGAATTAGAGTACTTGGGAGAAAATTGAAAAGCTATGGGGCAAAATATTTTCATGAGTACAACCTCTCCAGGTGCTGA-GGGACTGAAGCCATCAGACCTGGAGGGGGTATCAGCATTGACATTTCTGAAAATGCGCATGAAGAAATCTGCATTGATTTTAAATGGCATGCCACTAAAGCCTCAGAAATAATGCATGCTTTTCCATCTTCTAGTTAAGATGGAAAAACATGTGTTTCGCTCACAATTTTGTCTAGCGGGGAAATGTGAACTCCCAGCCGATTGCAGTCACATGCAGGCCCCTTT-CTTAGATTGCTTTCAAATAGAAGCGTAACATATGTTGTTCTGT--GGAAGA------AATAAATAAATAAAGTGAGCTTTTACGATGTTAATTCCTAATATATAGGATTATGGGAAAAAGTCATGTTGCTTAAAACAATCCATTGTTTTCCCTCTAGGTAGATTCATGGGGGTCGGGGTGGGGACAAGTGATGACTTTAACCCTGGCATATTTTGTGCTACCCCATGGGGCCTGCATATGTTTCTGAATAACTTTCCTCTTTCAGGGTAGAGAGAGTCAACCTCAATAACCACATTAGGAAGAATAATAGGCCAAAGGCACATGTGTTGACAGATGTTTC-TACCCCGTGGAAAGAAGATAGAGGAAATTAGATGATGAATTTT--AGGGT-----------CTGAAGCCTTTCTG-------AAGTATTGTA-TTTTCTTGAGGTCACCGAGTATGTGTTGGCTGCCTTTGGCAACCCTGGGACGTCCTTGGAGTGT--GTGAGTGAGCTCTTGAATTACTCCTGGGATGGACTGCTGACCAATTTGTCTCCACTGGCACTTGGATGCAAAATTAGAAACCAGG--CCTCTGAGCAGCACTGTGGCCTGCGCAGGAACCCTGTGTGATTTATCCTCACTCATTTTCTCCGCTTTCCATGCTAAAATATTTTTACATGGTCAATAAATTTTGGAGACTGACGTTAATAAGATGAACTGTGGAAGAAAATATGAGACTCTGAGTATTTATAAGAATGTGGAATTGATATTTTCGTT--ACTCCGACAAGCTCTGGGCTTGAGGGATCTATTTGAATGAGGGCAGCTACTTTAATTTGGATAAATTGCATAATGCATCCTGAGAACCAATGGGTCTCGGGCCACTAATAATCACAA-----------GGGTGTTTAGTGGT-----------------------------TAGGACATTTCAGAGAAAGGAGGTGGCATCCTTG-AATGGGTAAGGTGCATC-------------------------CTTTGGTATTGAAAAACTAACTTTAATGTTGGCCTGAGGTGACTGTGGGTCTCCATCA-GCCAATGGTATCTAC----CATCTATAAACTCCAGTGAGATCTGGACACAGGTTGCTTGAGCACCAGATGAGAGGGTAAGTATTGT-AGATGACCCAGAGATGAAGATGTTCTCT-------------------------------------------------GTACTTGCAATACTATGC------AAAATcacac-acacacacacacacacacacacacacacacacCCTTTTGAGTGCA------AGATACAAGGATAATCAAGGAAGTAGTG-TTTAGGTTAATAAGGAACAAC--CATTAGAAACTTAGGTTTTGTGCTGTGCTTTCTAATCTATCAGCTTCACCTAACAGAAGTCTCAGGGTGACATTGTGACCCTAAAAC-----AGGCAGGCATGTTCTGGT-TTGGGCTGTGGACTCTGTCCT----TTTTAGCAATAACCAGAAACCCCAAACCTCTAAAGGGCTCAAAGCCCC------AATG---------------AGCAAGTCATTAAAAACCGGAAGAGAAAGCCGTCACCAATTGGTTCAGATACTATTGATT---------------------------------------ACATGATTTCCAG-CCTGAGAAGGATACGGTACTTCCTGGACTCTATTATAATCC--ATGCTG-CTCTTCTGTACATGCCACTTTCCTGAGCACAGGACCTTTGGCAGGACGAGTGCCTGGGTTGTATGTGACACTTGTG
s HiC_scaffold_1 141519719 3108 + 233722169 CatattttataaagagaaattaCCCTCA--GGACTGTATCCCAGAGATGACACATGTCTAAATAAAGTCATTTGCCA-----------TGGAAATGTATAAGGCTATTTAACTCAGAGATGTCACATTTGGTGCTAGCAAAAGGCATG-----tgacatgcagaaaaagctgaaTAAAGGCCACATTGATCCTGAGAccatattagaaaacaaaaatttgctCTTGGTTTTAAAAGCTACTACTTCTTAAATTACTCAATTGTTATGTAATATACAATGttccaactttttaaattttctcaggtCAGTGGAT---CGTTTTATTGCCTATCGCCTtgaaaatcaatcacaaacttgaaagaaataaagataaatctCCATACATCTCTGCACATACGTGCAGCAAATACCTAACACATGGTTTTCTTACCTCTATCCCTTCTTCATAAGTGGAATGAAGCCTCTCTCCTTACACATGCAGTGCTGGGATCCTGTCATTCCTAATACTGTCCACATTACTCATGTGGCACATGTTTCATCTCTCCTACCTAATTTGTGTCTGATTGTCTTCTTGATAATCTTATTCTTAAATGAGTATTGCTAAAATAAAAGCCTAAATTTCCAAACTCTTGCAggcaacttttattttgaaaatagcagAATTATGGAAAAAGCTTTGTCTTTTACCTCCTAAATGCAAAAGTAGATGAATATTTTTCTGACCTAATAATGATCTCTCCTGGTTTATTTGCAATATATTAGTGATTAAGTAG---CTGCTACATTGAACATTCTTAACTTGTGCCAGGTTATTTTATGTCACTTGAAACATCTTAGTAGCTGAttggtttctctttccttcttgagTGTTGATAGCGAAGATTATCATGATAGCACAGC-AGTAAAGAGAATAGTGTTCTTTGATCTACCTGAGATTAgcagtaaatacataaaaa-----------------------------------------------------------------------------------------------------------------------------------------tactctTATTCCTT----------------------------------------------------------------------------CAGCAGGAATTGAGGAGAGAGAGTTCTGTTTCTCACTTATCGCTAGTCAAAAA-AATTACAATTCTCAGGAGCAAATT-AAAAGCtgggaggaaaaatattttcaagagtaTAAGTTCCCCAGGTGCTGAAGGGATTGAACCCATTTGATCTGATGGATGTATCAACCctgacatttgtgaaaatgagCATGAAGAAATATGCACTGATTTTAGAAGGCATGCCTCAAAAGCCCAAGAAATAATGCTGAACTTTCCATCTCTAACTTAAGATGGAAAAACATGTGTCTTGTTCACAATTCTGTCTGT--GGGAAATGTGGACTTCCAGCCAATTGCATTCACATGCAGACCCTTTTTCTGAGATTGCTTTCAAACGCAAGCACAACATATGTTGTTTGGtctgaaagataaataaatgaataaataaagcgAGCTTTTATGATGTAAATTCCTAATACATAGGATTATGGGGAAGAGTCATGTTGTTTAAAACTATGCCTGGTTTTCCCTCTAGGTAGATGCACagggat-ggggaggggagggttAGCAATGTTAACCTTTATGCGTTTTATGTTTCCCTGCGGTGCTTGCATATGTATGAGAACATCTTTCCTCTGGTGGAGTACAGAGAGTCAAGCTCAATAACCGCGCTAGGAAGAATAATAGACCAATGGCATACGTGTTGACAGAGGTTCCTTACCCAGTGGAAAGGAAATAGAAGGAATTAGATGATGAATTTTTAAGAGTTGAAGCACTCACTGTAGTTTTTCTAAACCACCAAATACTGTGCTTTTCCTGAGGTCTCTGGGTATGTGTTGGCTGTCTTTGGTGACACTGAAAAGTCCTTAGAGTCTAAATGAATGAGCTCTGGAATCGCGCCCATGATGAACTGCTAACCAATTTGTCTCGGCTGGCACTcgaatgcaaaatttaaaatgaaggtCTTCTGGACTTCATTGTGGCTTGTAGAAGAGCACCGAATGATTTATTCTTGCTCATTTTCTCCCCTTTCCAcgctaaaatatttttacatggtCAATAAATTATGGAGGCTGACATTAACAAGATGAACTGTGGGTGAAAATATGCAAGCTTGAATATTTATAAGAATGTGGAATTGATATTTTACTTTCTCTCCAACTAGTTCTGGACTTGTGGGATCTA-TTAAATAAGGGCATTGGGCTCAATTCAGATTAATTTAATAAGAGGTCTTGGGGAATGATGAATTGTGGGctattaataatgaaaaaatggaaaagtgaaTATTTAATACTAGGAGGAAAAGTGAGTACTTGATACATACGAGGACATTTTAGTGAAAGTGGGTGACGTATTTGTAACAAGTAAGATGCAGCGCTCTTCATCCCTGTTTTGGAAAGTCTTTGGCATGGAGATGCGGAACTTGAT----ACTTGATG----CATGAGT-TCTATCGTGGCAATGATGTCTACCTATCATCTGAAGGATCCAGTTAGTATTTGGCAGAGCTCACTt-aggagcaga-gagaggagaaaaattgCAAGATATCCCACTGCTAGAGGCATGCTCtaaaaggaaaagtaaaggaaattCAAAACAGTCAGTCACCGAGACTGGAGAGACCTGAAATGTTCTACTTGGAGAAGATTTTATGATatactgagagacagaaagagatttCCAGATACtttgagaaacaaaacagaaataaaaagatcatCAAGAAATGACTATTTTAGGCAAGTAAGGACCAATAGCACTAGCCAGTAACATTTTGTCC--TGCTTtgcattccatttattt------atttatttttcaagactGTGTTATGGGATAAACATGTCTGAGGTGGTCCT-TTCTGATGTTTCGTCATGGACCATTTTCTGcacttaaagaaataataataaa---cattccTCTGTGGGATGCAATGCTCCATCCTAAATGTCTAGGCAGGTGTCAGGCAGGTAATTAAAAATGGGAAGAGAAGATGTTTGCTAAACACTTCATACTCTATTGATTTATACTTAGATTCTGCACAGTCAGTAATCTGGAAATTCCATGTGTTTTCCAGTCCTGAAGAGGATCCTCTATTTCCTCCAATCCCCTAGGATTtaaatattgacttttttttaGATGTCATCTTCCAGAGCCCATGAATACTGACGTGGCAGGCACCCGGAGTAGAGGGAATCCTTGTG

a score=4538
s chr3           154531758 87 + 160039680 GCTGGACAGGTTTTGTAGATCTGAGAAGTGGACAATTTTAGCTTTTAGTATGTGCAGAAGTGGGGAGGCCACTCTACCCCTTTCCTC
s HiC_scaffold_1 141523062 87 + 233722169 GCTGGACAGGCTTTGTAGATCCAAGGAGTGAGTAATTTCAGCTTTCAGCACATGAAGAGGGAAAAAGGCCACTAATCCCCATGCCCC

a score=16486
s chr3           154532855 965 + 160039680 AGAAATGGCTGGGGCCAACTCATACTCAGGGTCTATTATGCTTTTATTAGCAGAAATGGTGGGTAAA-TGTGGGCCCTGTAAAGCAATTTGCCAACTGTGCACTTACAGCTAAATTGTTTAAAGTTTCAGAACCCCATTTTCATTGCCCATAAAACAAAGGTGAAAGAACTTGCTTTTTGAGATATATTTAAGAA-ACAAATGTAGTAACAATA--AATTGCCTGGTGCAACTTTAAGTGCTCACTAAATACATTAAGTAAAAAATCTTTCACAAAGTAACTTTTCATTATAACC--AATTTTCCAGATGGGATACAATTGTAAAGCCCCCAGAACACAGAGAGGAACCCAAAAAGCTATAGCA-AAATAATAGTAGCAATTGTAGTTTTGCTCTTTTA------TTCTGAGTCCACTTAGTTGGTCATATTGTCCATGTTTTCTGATGAGAA--CAG----GCAGAGATTAAGCAATGTGTCAACTTAGACTGAGGCTGGGATCTGAATCTTGGCAGAGCGGCAAGGGAGATCAGTTATTTCTGAAAGTG-----TAAGAAAGATATC--------CTGTTACCCTTCAGCTTCCCCTCAAGGCCCAA-GCTGGGGAAAAACTGA------------TGATAACGGCCAGTTCTTCTACCAAGCCAGGTCATTTCCCAATCCTTCTGGAAAGGAAAACAGATTCC-TGCAGGTTTGGGGAACATGAATTCTGCTTAGGAGAACGT-TTCCTGCTGTGCCTTGGGTCTTCCTATGGTTTCAGTCCTAAGTTTTCAAGCTCCTTGGCAAAGCTCCGAACCTGAAATGTGCAGGCGTCAACAAAGATTTGAAGTGTATTTGAGAGCCCAAGCAGAAGACTTCACCTCCAGGGCCTGTTTTAGGCTCAAAGGGAACCTGAAACACCTCTCAGGATGTTACTGTAATT-TCAGATCAATGATTCC--AGATTTTTAGTGTGTGCCTTTGCCATGACATTACAGCTGTGTGTCCCCTTTC
s HiC_scaffold_1 141530161 972 + 233722169 AGGAGTGGGTGGAATCactttattttcagataataCCGTGCTTGTATCAGAAGAAAGAGTGGGAAGGGCTTGGATTTTTCTCATCCATTTTCAATCTATGC--TCACAGTGAAGTGGTTTAGTTTCCATGGACCATGCTTACATCATCTGTAAGGGGAAGATAAAAG------CTTATTTTGGCACACAggagaatagaattttaaaaaagatgggaATTGCCTGGTACAA-TATAAATACTCAGTAACTATAGTGTACAGAAATTCTCTCCCATTGTaactttatattattattttaattttt--------------tttcagagggTCTAAATGATAAAAAGGAT-----AACCTTATAGTATACACAATAATAGCAGCAAAGGTTAGGCTCACTTAATTCCCTTCTTAATAAGAGAAGTAGGTAACAATTTTGTCATTCTTAGATGAGGAAGCAGCAATGGAATGATTAAGGGATACATCAAT----GCTG--GTTGGGAT-------TTGGCAGAccaagaggagagaaaaatgatcTCTTAGcataatggttaaaaaaaaaaccaacgaTACTTGTTTCTATTTGACCTCCCTTTAAGCCCCTATGGGGGAGTAAAACCAAGTGTAGTATATCTGATAACAGCCAAACCTTCCTGTAAGCCAACTCATTTCCCAATATTTCTGGAAAGTAAATCATATTCTATGCAGTTGCATGTGATATTAACATTGCTTTAGAGAAAGTCTTTCCGAGATGTCTGGGATTTGTTAAGaattttagtat--aattttcttGTTCCAGATAAGGGCTCCTAACCCAAAATGTGCAGGCTTTCATGAAgctatgatttatattttcaaactGAAGCATAAGATGCTACCATTGGGAACTATTTTGGGCTCATCGTGAATCTGAGATGTCTATTTGGTTTGCAATGTAATTATTGGATCCATGATTCAAGAGATTTTCCTAATGCATCTTTCTTGTACTATTACAGCAATCTATCCATTTCC

a score=13205
s chr3           154540131 776 + 160039680 GAAAAATCGTTTGTGCAAATGTTTTGTTTGCTTGATTGTGCCTGCTTTCCT-CTTGCA------GGGTTCCCCCCCCCCCCCAAAGTCCGGATTTCATTTACAACTTGT----------------------GACTAAAACTGAAACTTGTGAACTTCGGGTTCTGTTTTCAGGATGCTACCATGGCTTTCTTTAAGAGAGAGAATGCATGAAACTCTTTTGCATAATGATGAAGCTTAGTTTCGTTTCTAGATAA--------TCATTCTT--ACCGAAAGGATAAAC-TGTGGAAAGTGCCATGTCCACAGAAA-GTTCTTTTTGGCAAGACAGCTCCAGCCTGGGATAG-------CTGGAGTTCCCCTGCACATGAGGCCAAGTCTTGGGAGGGTCAAGTAT----ATCCCCAGGGAGCCCAGGCTCATGGAGAGTTGCTCTCCAGATGGTTTCCAGAGT-AAGATGGAGAGATCCCCTGGAGGACCCAG-ACCCCAGGTTTTGGCAGAGAAGGTTGTTTCTCTAGTG-------GAATGGAAGCAGGCCTCGTCCCAGGCTGCTCCCTCTCACACACCTCCTAGACCCTCCGAATGACAACCCCCAGCACTGCCTGCCCGAGGAGGCTCGGGTCTTCC-----ACAGCAACAGGCATTTTCCAAACAGATTAGA----GTCTGTGTTTTGTCT-GAAGCCTCCTCTAAGACCTAGAGGGAGTCCAGAGCACAGGCCTGGGATATGACATCGCAGCCCATCTGGTGACAGGATCCAGGCCCAGGTCTGCTGGAGCTTTGAG-----------AGCTGGGGAAGAGGGAAGGGAGCCAGGTGCAGCTGAGGAAGGG
s HiC_scaffold_1 141534120 774 + 233722169 gaataatctttgttgttactgtttt-----------tgtgcCTGTTTTCCTGCTTGTATACTGTGAGTTCATCTCTTCC---AGTGTTGAGTTTTCATCTataacttgtccaaggtcacgcAGTGGTTCACTGGTAGAACTGACATA---GAAATTCAGATACTGTTTACACTAGATGGTGAtcactttctttaaaaaggagaCTATGTGATACTTATTTGCATCGTTACT---CTTGGTATCATTTCTGTGTAAAATTGTTATTATTCCTTGgccttaaaaataaacacatgcaaaGAGCTGGATCCACAAAAATGTTCGCTC--GCAGGACAGTCCAAGCCTTGTCTTGGTTGGGCATGGGGTTTCCTTGGCCGGGAGGCTAAGGGTCAGAGGGGC--AGTACTGGAATTCTC-------CTGTACTCCTGGAGAG-------CCCGATGGTTTCCAAAGTTAAACCTGAGAGAGTTCTCAAAAGATGCGTTATCTTAGGCTTTTGCAGAGAGCTCCCCTTCCCCTGCGCCCCAACACAGAGAGGAGGTCCCCCACCACAGCAGCTCC-----ACACAGTGCTCA---CCTCTGAAGGATGATCCC---------------------------GTCTTCCTGCTGAACGCAGTGGGC--TTTTCAAACAGATTAGACAGGGTCTGCGTTTTGTCTCTAAATCTCCCCTGGGATCCCGCGGGAAACCAGAACACCGGCCTGGGATTTGAAACTGTAGCCTGGCTGGTGACAGGAACCAGA---------GCTGGGGGGTCGTGGCGAAGGGGCTAGCaagagaggaggaggggcagCCAGGTGCAGCTCGGCAAGGG

a score=66579
s chr3           154543071 6359 + 160039680 [encoded data, 7156 characters]
s HiC_scaffold_1 141542656 6359 + 233722169 [encoded data, 7156 characters]

a score=96371
s chr3           154550278 1875 + 160039680 TTTCTCCCTTAAAGGAAAATCTC-------AGAGAAGAGAGAGAAATAACTCGCACGTCTCTTTTTAATTAAGCATTTCGCCCTTTGAAGTTAACTCTGATTTTTTTCACGTTGGTGATGTAATTTATGTAAATAATCGTCTATCTATGGAAGGAGCGCGTCTGTCAAAAGCTGAAATAAAAAACATCCGTCATTTTGAAGTGATTAACATTCTCCAGATGTCTACATCATCAGATTTCGGGAGTTTCCCTTTGTTGTGATAATGACACAGTACCCAGAGCGAGAGTGTTTACTTTTTTGTATGGGTCAAACGCAGATTTTTCACAATCCTATTAAGGCATGCAGTTCATTGTAATTGTGTGTGTAGATGAAAGCATATTCTGTTATTATTATTCCTCTTAATTGTAAACTGCTGCTGGTAATTTTACTGTAAAAGCTCAAACAAAAGGAGAACACTTGAAAGGACCACCACTCCCCACTTATGTAATCAATTTATATATGTCAAGTTTGTACTGGGATGGTTATTCCCTTCTGTTACCAGACATGTGACATGCTACCACCCTGCAGCTCCGGGCCATGCACGCATGCCTACGGGTCCCTGTGCAGGCTCCTTGGAAATACAGTACATGTCGAAGATAATGTTAAACGACAGTGCCAAACTTGTTCCCTTAGGCCTGCTTGACCCCGGGGTTCAAGGAAAAACAGGAATGGTTCCGTTTACCTTCAGGGCCTGAGCATCTTCACAGTGGACAGATTAGACTTGGAGGCTTGGCAAAGGTCCCTGGAGGCCCAATTACCCCTGTTAGGGGACCCGCTGAAGCATTAATGACATATAGGCACTTCATTCATAAAGTCAGGCTCCACTCATGTCTAGCATTACCCTCCTCCCTACCCCCTCACCCCCACACATCCCTGCTGGCTTCAGATCCAAAACGCTTGTAGGGATTTATTAAAACCGTTTGACTGGGGCACAAACTGAGTACACGCTTATTAGGTGCTACCTAAATGTGGGCAAGGCTGAGAGGGAGGTCTCAAAT---------CCCAGCTCAGCCTTTTAGAGCTGTGTTAATTAAGAGCAAGAGATGCAGACAAATTCCACGAAGGCTGTTCATTAGTAATAATCTCTCTCTCCTCCTTGTTGT-----TGAGCCCCCTGACGTGCATGCCTCGGAATTTCACGTGGTCTGACTCCAACAATGGCCACACACCACTTTCCTCTCGGATATATGAATGACAGG-AGGAAGTGCTTCCTTTAATATTCTTATGGTAAATCAAAGCACTACAAAGGTGAGGCGGTGCCTAGCCAG--GTAGAATGC--TTTCTTAATACTGGACTGAGCTTTGGTCACAAGCTAATAATTAATAGTTACCATCTGCTATCCCTTGTACCCAACC-TCAAATCATTCTCCATTTGTATTTGAACACACACATTTCTTTTAATCATTCCACGGGCATTTAAATACTTTGATAAGCCCCAAGTTCCT-AAATGGTTCCCAATCAGGCCCATCTGATGTGGCCTTTAAATAAGAACTTCATTAAAGACTGAATCCCTGTA--ATAAGTGGCGGAGGGCTTGAATTCTGAAATGGGAAGCCAGGGACCGGGGC---TTTCCATGTCACCCTGTGTGAGCATCAGAG-----TCTGCAGCTTGCCCACTAATATTGTCATCC-CTGCCCTTCTA-GAACAAATGTAAATGG---CTTTTGCCA----AGGATGGATGTCTTAACCCTTCTCTCTGTGTGAC-----CCTTCCAACATGTTGAGTGCCAAGTCCAAGATCATCTTGGGAGTCTATAAGCCACTGCTTCTCTG-----TAGGAAAAGATGAGTTTCAGGAGTTTTATACATTATCACCTTGCTTTCTGTGTGT-TCAAAGGCTCCACATTGTCTTGAAT---AAATATGTACA
s HiC_scaffold_1 141549136 1893 + 233722169 TCCctcctttaaggaaaaaaaaatacaaagagagaaaaaatagaagta-----CAAGTCTCTTTTTAATTAAGCATTTTATCCTTTGaagtta-ttctgatttttttcacattgATGATGTAATTTATGTAAATAATCATCTATCTATGAAAGGAGTGTGTCTGTcaaaagctgaaataaaaaacatcCGTCATTTTGAAGTGATTAACATTCTCCAGATGTTTAAATCATCAGATTTCAGGAGTTTCTCTTTGTTGTGATAATGATATAGTATCCAGAACAAGAATGTTTACTTTTTTGTATGGGTCAAACACAGATTTTTCACAATCCTATTAAGGCATGCAGTTCATTGTAATTGTATGTGCAGATGAAAGCATATTCAGTTATTATTATTCCCCTTAATTGTAAACTGCTGCTGGTAATTTTACTGTAAA-GCTCAAACAAAAGGAGCATACTTGAAAGGACCACCACTGCCCACTTATGTAATCAATTTATATATGTCAAGTTTGTACTGGGATGCTTATCCCCTTCTATTACCAGACATGTGACATGCTACCACCCTGCCTCTCGGGGCCAGGCACGCATGCCTCTGGTTCCCCTTGCATGCTGCCTGGAAATACAGTACATGTCGATGGTAATGGCAAATGACAGCTCCAAACGATTTCCCTTAGGCCTGTTTGACCCTTGGGTTCAAGGTAAAACAGGAATGGTTCCGCTTACCTTCAAGGCCTGAGCTTTCTCACTGCTGGCAGATTCAACTTGGACGCTCCAGAGAGATCCCTGGAGGCCCAATTACCCTTGTTAAGGGACCTAGTGAAACATTAATGACATGGAGGCACTTCATTCATAAAGTTGGGTGCAGCTCTGGTCTAGCGTTACTCCTCT--------------------ACACCCCTGCCAGTTTCAGATCT-GAATGCTTGTAGGGATTTATTAAAACCGTTTGACAGGGGCACAAACTGACTACATGCTTATTATGCGCTACCTAAAtgcagaggaggctgggagggggGTCTCAGATCTCCACGTACCCAGTTCGGTCTTATAGAGCTACATTAATTAAGAACAACAGATTTAGAGTAATTTCTCAAGAACTGTTCATTGGTACTAATGTCtctggcttgtttgttttgttcattaaTACCCTGACATGCACTTTTAGGAATTTAACGTAGTGTCATTCTATCAATAG----ATCACAATTCTCTATTGAACGTGCCAGCGGAGGGCAGGTATTTCTTCTGTTGGTGTTTGTATGAGAAATCAAAGCACTCCAAGGGTTAGATGATGCTGAGTGAGACACAGAATACCTTTTCTTGGTACTGGGCTGAGCCATGGTAATAGGCTAATAATTAATGGTTACCATCTGCGATTCCTTGTATCCAACCTTCAAATCACTCTTCATTTGTATTTGAACACACACATTTCTTTTAATCATCCCATGGCCGTTTAAGTACTTTGATAAGCCTTGGGTCCCTAAAATGTTTCCAAATCATCCCCATCTGACAGAGGCCCTGAGTTAGAACTTTATGAAAGA--GGAAGCATGTAGCATAAGTGACAAAGGGCCAGAGTAGTGGGCTGGGAATCCAGTCACTGGGTCCCTTTTCCTTGTGA---TGGCCACACATCAGGGAAAACGTTGGGGTGGGTCTACCAGGa--gtcttcctcttccctcccatgAACTCACGT-CGTGGTCTCTTCTGTCACGTGAGCGTGAATGCGTCAGCCTTTCTCCCATAGAGCCCTCTTCTTCCCTCCATTTAGAAGGACA--TCGGGGAATATCCTGGGA-CCTGGATATCATTCTTTTTCTGGATTAGAGATAATGATGTCCCTCCATACTTTCATACATCTGAATTTTGCTTCTTCTGGATATTAGAGGGTCCACATTGCCTTGggttaaaaaaatgttca

a score=20704
s chr3           154558284 639 + 160039680 cctctcttcaaaggtttcagggttggctccactaatccatgtattttcctgcttccgaagttgtctgctcc--ctttgccattcttgctggctttatgatttatgcctatttattagaacgaagaataatgggcttcaggaaagaattgactgcaaatgtgt--gctcagtgcaccatttttaacTTGCAATGACGGCTTGTAATTTACATCATTGATTTCATGCAGTATCGCGTTTCATGTTCCACCCCATTT-TAACATTTCATGACTTTCTTCCCTGAGAATGACAAGACGCTATGCTGGGACATCAGT-----------CCCCTCCATGTG-ACCCAGCGCCTCGCATGATCAAAAGAACCATGTCTCTTGGTTCTCTGTGTTTTATTCTTCCTTTTCTTAGAGACATGCCATCCCCTACACATCCAGCAAAGGATTAGGGGCTCTGTGCTTCTATATCAGATATCTTATTACACTCCAGACAGCTGGCCCTTTAAAGGGTATTTTTTGG---GGTATGTgcagtgtagggaaatggcaattgagaaaactggactcaaaattctcctgtttaaaggcagaaagactaa-ctttgagtccctaatctacttcttatacttgctgtgtgTTGTGTCTGAGGCCAATtgtgtgtgttt
s HiC_scaffold_1 141557812 633 + 233722169 CCTTTTTCTCAGTGTTCGAAGTCAGTCACCGCTTGTCCACGTATTTTCCAGCTTC-AAAGTTG-CTGCTACTGCTCTCCTATCTCTGC---CTTGGTGATTTATGTCTGGT--------AGGAAAATAATGAGTCTCAGAGAAGAATTGAACGCAAATGTGTATGTCCAAGCCATCATCTCTAACTTGAAGTGATGGCTTGTAATTTACACCGCTGAGTCCATGCAATATCGCATTTCCTGTTCTACCGTATTTCTAACATGCCAGCTTTCTCTTCTTGAGGAATGATGAGATGTTACACGGGAACATCACTGCCTCTCAGCCTCCCTCCATCTGGACCCAGCTCCCACCATGATCAAAAGAACcgtgtttcttgtttttgta------atttttttttctctgaggaaCATTCTGTTTCCTAGACATCCAACAAAGGATTATGGGCTCTGTACTTGGGTATAAGGTATCTTCTTACACCAGAGAGAGCTGGCCCTTTAAATG--ACGGTTTGGACAGACACACGGAATGCA--TAAAtaataaaggagaggaaaaaaag-agaacccTTTTGTTCAGGGTCCAAAGAACTGATTTTTGAGCCCTGCATCTACTGTT--AACTTACTATGTGATGTCTATGA-Tctaattgtcttttttt

a score=59045
s chr3           154561694 4482 + 160039680 [encoded data, 4830 characters]
s HiC_scaffold_1 141562370 4151 + 233722169 [encoded data, 4830 characters]

a score=94336
s chr3           154567048 5479 + 160039680 [encoded data, 5919 characters]
s HiC_scaffold_1 141567039 5088 + 233722169 [encoded data, 5919 characters]

a score=3763
s chr3           154575393 114 + 160039680 AATATAAAAAT-TTAAAAAGGGTCGCTGAAAAATAACCAGAGAGGCCATGACACCATTAGTCACAAAGCATATCTTAGAATTCTTGGTTCTGGGAATCTTGTCGTCTTGTCAGGA
s HiC_scaffold_1 141578955 113 + 233722169 aaaagaaaaatattttaaagttttgctaTAAAA--AACAGAGAGGCCCCATCATCTTTTGCCACAAAGTGTATCTTGGAATACTGCATTCTAAAAATCTGGGTATTCTGTCAGAA

a score=13219
s chr3           154579526  955 + 160039680 CCTAAGCAAGCTTAGAAAAAGCTACCCCCATGTGTCTCAGCGGCT--GCTAGCAGCAAGCTCTGGT-GGTGAGAGACAAAGTAGACAGAAGGCACAGGTATTTC--CCTGAACAAAATACTCACGTGTATATCAGTTACTTTTATCCACACGGCCAAAGCAAGAGGAGACACTTGTC---------CAGGGCAAGAAATGCAAATTCTGAGCTGCCCTGTAA----GAAAGGCTCAGGGTTGGA-GTGAGGT-TGTTCCCATGGCTCCAACTCGCATGCTCATGATGCTGAGGCCACCTCAGAGAAGAAGTAACCTTGCTTTTCCTATTTGACATAAAT--------AGACACAGGAAG------------CTTTACGTTTATTTGTAGAGTGACTCCTAATGTGCTTAAAA--AGCAGTCTTCAGAGAGCAAACA-TACACAAAGCTACTTTGAAAAG-CCATTTACACTTA-------AGTTTCTCTAAAA--CAGAGAAATTAACTCTTGCCT------------------------------------------------------------------------------------------CCTGTA------------GGGTTGATGCCC----------TCAGCAAGCCTTGATA--CTCTTGTAAAGAGCAGCCTTATACCGTGCACCAGAGACGACACT----------------GTGCCAGGCCTCAGTCGTCTCCCAGGAAGAGTGCAGCACTGATTTCCAGGCCATCACCGTCTTCC------AGCTCCCTCCCGTTGTCTTCAGTGGTCGATGGGCCCTGCGCTTTTCCTTGGCTCCGCCTATTCTTATGAGTACAAAGTGGGTTATTTCTCTCTTTGATCTTGGAATGTGAGTTTGAAATGGTTTCTCGTTTGAGAGCATGTTGTAGGTAGTTATAAAACCTGTAACGAATTAAAT-ATATGGTTAAATAGATGAGTATTTTGAAAATGAATGACTGAAACCATCCTCGAACTGGTCCTCTGTTTCGAAGCGTGACAATGTCGTGTTTTAACCT-------TATAAAGTCA----ACCGACTACATCTTTCTTTGCCTTCATCACTGTAAAAC------------TGTGTTTTCAACTCTTTAAGAGCAGCACT
s HiC_scaffold_1 141586986 1135 + 233722169 CCTGATCAGGCTCAAGTAAAG-TGTGGTCACTTGTTGCAGAGACCAGGCCAGTGGCAAACTCTGGTCTgggagaaataatagaaaaagaaggTTGAAGAATTTTGTCCTGAACAATAA--------GAGTATCTGTTG-TTTTATTCAAAAGGttcaaaaagagggaaaaactTGTCACTGGACTCCTTAGCAAAGGAAGCAGCCTCTGACCTTCCTCTAAAAGCTGGAGGCTTCAAAGTTAAAAGTGAGAAATATTACTAACATTTTTACTTAAATGTCCCAAATGTTAAAGTTGCCTT-GAAAGGATATTGTACTG-TTCTCCTGTGTCATAGCAGTGAAACCTGAAACACAAGGAGAGGTactaaaaattgtaattttattttt---gcgATTTGTTGTATGCCCAAAATGGGCAATATTTAATCAGCAAACAGTAtacaaaggtatttttaaaaggccACCTGTGGTTGCAAAATGGGCTTCTCCAAAATTCTGAGAAATTAGATCTTGCTTTTCTGACAGGAACACTCAACAACTAATACACTTGACAACtaaaaactgttttatttatttatttattgtcccaacaatcgaactcaggaccttgtaactgccaggcaggcatttgtgccactgagctacatcaccaggcCTACAAAAGCTCTTATAAAGAGCA---TTATAAAATCTATTACAAACAATATTCGATCAAAATACTTCAGAATTAAATCTTAGTAATCTTCAGGGAAGATAGTACCACTGATTCCTAGCTCCTCATAGccctccttttcaatttctttttcattttcttcagggCTACATTTTCCTTGTGCGTtggctgtgtttctttctttcttaggagAAGAAgatggtttatttttctctttgatcttGGGATGTAAGTTAGTCACTGTTTCTCTTTCCAAAGCACGTTGTAGACAGTTGTAAAACCTGTGAAGAATTAAATCCTACTGTTTTAT---CATGTA-TTTGCAAATCGATGACTGAAACACACCTGGAAC----------TTACAAAATTTGACAATTTCTTATATTTACctttataagtgtaaaataattggaGGGACAGTATGTTT-TGTGTCTTTATCAGGGTTGGACTAGGAAAATGAAtgtcttttcaattctttaataATATTGCT

a score=23004
s chr3           154583835 653 + 160039680 CACACACAGAGAATGGGGTGTT------------CTgagagtggctggtgctcagaggatgtagtttctgttcagga-----ggatgaagg---ttctgaaggtgg--atggtgatggttac-taatcatgtgaatgcacgcaatgccattggttacaatggtaaatttc-tgttacatatattttaccacagtaaaaaaGATAAAAAAAAAAAATTCAACTGCTGCAAACAGACTCAATTACATTGCCTTTCTGATTTCTTTATTCTTAACAATATTATATGCCAATATATTCAGCCC-TTTATTC--TGTTTTATTTAATATT---TTATTACACAGCTGATGAAAAGAAGAACATGGTTAATTTC-TTTCTACTCAGGGCCACAT---GGCTTTGTGGGATCCAGGTCTTAACCTTCTGCTAACAGACAC--CGAAACCCTTCCTCTTGTAGTCA-GAGGCAGACCTACAAACTTGGAGTTTTCCACCTGGAAGTTGTTATGTATGAAAT-ATCTTACAGTGTC---TGTCAGTCCCTGTCTCTTCCAGTCTCCAAATTGGCTCTTTACAAAGCAGGCCATGCTCCCTGGA----CTGTCCTGCCTAGCTCCAGACACTGCAGGCTCTCCGCTG-TTCTGTTGGCTGAGTCCCTTCCCACAGAGAAACAGGCGTGGGAACTGC--GCTTCATAAGCAG
s HiC_scaffold_1 141593650 692 + 233722169 cagagacaaaaaataGGGTAGTGTTTACCCAGGGCTGGAAGTG--TGGT--TGAATGGGTACACAGTCTGTTTACGATGAACAGATGAAAAGCACTCTGA-GATGGCAATGGTGGCAGTCACATAACCACGGGAATATTCTTAATGCCTCTGGTTAGAATGGTAAATTTCATGTTACCCATATTTTACCacag-aaaaaggaatttttaaaaaaatcccaccACTAGACATAGATTCAATAACTTTGTCTTTCAGAATTCTTTATTCTTAACAATATTATATGCCAATATATTCGGCCCTtttattctatgttttatttaacattttcttattACATAGCTGATGAAAAGAAGAACACGCTTAATTTTAATTCCACTCACAGTCAGATGGAGGTTTCATCTGATTCATGTCCTGACCTCTTATTAATAGACACAAAgaaattcttcctcttgtagttagGAATCAGAACTTCAAACTTCTTCTTTGTCACCTGGAAGCCATTATGTGTAAAATGATTTTCCTATGCCTGGTGTCAGTCTCTGTCCTTTCTAGTCTGCAGATCAGCTATTCAC-AAGCAGGC--TGCTCCTTGCAGGCCTGGCCCTGAGCAGCTCCAGCACCCGGAGGAACTCAGCTGCCCCTCCTGTGTGCGCCTCCTCCTACTGAGAAGTGGGCTTAGGGACCaatgttttcagaagcag

a score=22374
s chr3           154585216 1254 + 160039680 CCCTTTCGCTCCTAGGATCAGGAGTTCTGTGCCTGCATCTGGC------------TGCTCCCTGAGGAGCC--CTAATTTGCTCGCACACTCTGAATCCACACGCATTCTTCTAATCAGGATCTTAAGACACTTTTATCCTTCTTTAATTTTTCCCTGATTTTATATGATGAGCCTG-CTCTCTTGATAGCGGCATGCAAACTATCATCTCAAAACACATTTTTGAGTCAATGGATTTAACTCATAATTTGATTTTATGGTTGGTGAGCATGGCTCAATTAACTTTGCCAGGTGTAGAGTTAGTTGATCTTGTGCTATATTTATAAACTTGTTGGAATTCAGGGCAGAAAACACGAGAAACTGAACGGCTGCTTCCTGTGGTATTGTACCCACTCCCACAGCCCAGTCTACCTGGTGGACAGTAAGC-TCTGTGGTGG------TGGGTGTCCGTGCGCAGATCATGTCTGCAG------GTGCCAGCT--------------GCCTACCTGAAGGCTTTGCTTTGGTTAGATTGTCCATGCTTTGTGG---------CAGGATTTGTCATCAATTTTCCTAAACCAGGAT-----------------CCTCAGGCTGCATGCTGAGATGACAACTGTGGTAAGGAATCAGCTGTCCCCAGCCCCCACTCCAGTCTGGTACAGGTCACACAGCTCCCTAGGGGAGGTT------------TCAGTACCTCTAGGAATTCTAGCCTTCAGAGTTGTGAGTGGCGAAG------GAGGAAGGGCTCCCTGTTC-TGCGTCCACGGCAGGTGC-------TGAAGCCTATCATGAA--------------GTATACGCTACTTAAT-GATGAGGGCAACTCTTCTCTGAGGTG-GCATCTCCCCTAAGTTACTGATGACACAATCAAAATACAAGAGTGTCGTGACAGACCAGGGCTGAGTGACTTGGTGGGACAGGG--TTGAACCCAG-GCTG-CTGTAGAGACTAGGTCC--------CACTGT-----TGTCACTGGCACCTTT-GTCTTAGCTG---CAGTTGGACATCTCTAGGTAGTTAGGGGGTTCAGGCAGGCAAGACAAGGCACGGGCTCTTCTCCAGTATAAAGACATGACTCTGACATCAATGCAGAGACCCACTAACATGAagacagacagacag-acagacagacagacagacagacaTCCTGTCTACATCCTGCACTGAGAGCAGCCTGAGGGGCTGCTTTACAGGTCTTGAAGAGAGAGGCAATGTAGATGGAAAGAAAAATGACTGACCGAGAGATACTTAGGCAG----TGGTGTAATGTGAGACTTCTAAAAGTGTGGGGAGAAAGAACAAGGGAAGTTACATAAAAATGTCCA
s HiC_scaffold_1 141594549 1291 + 233722169 cccttttctacaTTAGAAGAGTAACTCTTTCTCTGCATTTGGCAGAATACACAGCTGTTCCTAAAGGAGCCTGCTAATTTGTTC--ACTTTCTGAATTCATATGTAATCTTCTAATCAGTATCTTAAGACACTTTTacccttctttaatttttccctgATTTTATATGATGAGCATGGCTCTCGTGATAGCAGTATGCATACTATATgctcaaaatatatttctgagtCAATAGATTTGAAGCATAATTTGATTTTACAGTTGGTGAATGTGACTCAATTACCTTCACCAGGTGTATAGTTAGTTGCTCTTgggttatatttataatcttgttgaaattcaagaaaagaaacagagaacacTGATTCACTACCCTCCCTGTTTTAGCACACGGTCCCACA------CCTAACAAATG--TAGTAACCTTTTGGAATGGCACGATTAAGTGCTCATGTGTAGTTTAAGTCTAGGGTCCAGTGGGTTGGCTGGGTACTCTCCAGAGCTTACCT-AAAACATTGCTGTAGTGCAAATGTTTGTACTTAGTGGCCCCATTtccacagtttgt------tttttttcaacCAGGGTTCAGCTAAAAATAAAGCCCTCATCCT-----CTAACACATCCACTGATATAATTAAT---TTCTCTCCAATGC---TTCTAAAATGGTACATATTATATACCACCACTGGGAGAATTAAGAAAATACTCTAATTACTTTGGTGAGTTCTATGGTTCAGA----TGAGGAACCTGGTCTTGTGGTTATAGGTTTATTCTCCATGAGCCAGCGGAGAGGGCTATTCTATGACACTCATTATGACATTACACTCATTATGCACATGGGATCTAATGGATACTAataattattcttcaaaatatgCTTTTTCCAGGAGTTA----------AAGAAAAATGGA---------------GCCAAG---GAGTAACTTGGTGGAATCAGGATTTGAATCCAGTTCTGCCTCTGAAAATTAGTTCTTTTCACCACACTATGCCACTATCACTGGTACTTTTGGTCTTGGATGATTCAAAAAAAAGTAT-TAGGTTTCAAAGAATTTTAAGCAGACAGGCCAAGCAATAGATTCCTTTGACCCTTACAGACATGATTCACATTTCTGTGTG-------------ATGCGGCAAATCACACAGTAAAGATACATA---AGAGAAACATCCTGCC-----------ACGAGTGAATCT-----GGCTGCTGCAGTGGTCCTGAGTAAAGAA--AGTGACAGCAAGCAGGACACTGGCTGA---AGAGATATTTAGGCAGTAACTGATGTGGTGTGTGGTGGCCATATGTGTAAggagaaggaaaacaggaaatcatA-AATGATATCCA

a score=18884
s chr3           154587348 620 + 160039680 TTAACCTTCCTTTCCTCCGTAGGACAGAGATGAGTATCTAAGCAGTCTGGACTATAA----------GGACATGCTCCCCAATTCCAAGTATGACGTGGGCAGATGCGAGTAACATGGGAATAAATAATTGACTGTACCTCCCAATTCTTCTCTTGTTTTCCTCCATTTTCTGATTTGCTATAGTTAACAGGAACTCAATATATTCCTCTGTCACCATCAGCTTTCCCTTGTGGGTTAATGGGACTTCCAATCCATGTGTACCCCGGACAGCCTGGAAT--AGGTAGGAGTTTAGACGTGAAG--------AACAGAGCCTCTGAAG-----TTGAGTCAAGTCCCAGTCAGGGCTCGGTTCGAACA--GTTAACTTCCGTTACAGCTTGTAGGCCCTTGACCTCATGGAATTTA--TCAACCTCAAACCAACCAAAG-GAGATGAAACAGACTTCTGC-----------------------AAGGACAGTCTATACATCCTTTTTCAGAGAAGGAGATGATATCAAAGAATTTAATAACTTTGTACAGTTTCAATCTCACTATGGCTTAG-AAGCCTTAGCACATGATTTAAAGAACAGAAATAGATGA---CACATCAACA---------GAGGCCTCAAGGAAAAATGAGTGTCTTGGAGCAT-------CTGCGTGAGCTGAGGACGGC
s HiC_scaffold_1 141596466 672 + 233722169 TTGATCTTTCCTTTGTTCATAATAAAACTACAAGCAGATAAGCAATTGCGACTGTAAACTAAAGACAGTACATATTCAT-AGTTTTAAAGATAACCTAGGCATAAAGGAGTAGCATT---------------TTTTACCTTCCAATtcttttcttgttctcctccAGCTTTTGATTCGCTATATTTAACAGGAAGTCAATATATTCCTCTGTCACCATCAGTTTTCCCTTATGGCTTAAAGGAACTTCTAAGCCATGTGTACTCCGGACAGCCTacaaggaaaaaaacaatttagATATAAAGATTTATGCACCGCAGGCACTAAAGATAACTAAAGAAAAGGTCCAGCCGTGGCTGGGTTTGAACATGGTTCAGCTGCATCACAGTGCATAAGTCTGTG-CTTTATGATAATTAGGCTGAACACAGTTGAACCCAAGTAAGGTTAAATAGATGTTCCCATCATATATAGTCATTTCTAAAGAAAGGCATTCTCTACATTGTCTTTCA-AAAAGCAGATAATATCAAGGAATCCAATAACTTTTAACAGTTTCAATCTCACTATGGCTTAGAAAGCTTTagtacacaatttaaagaa---aaataaatggaaccATAACAACACTGCATGGGGAGATCAAAAGGGACGGATGGGATGCCGGAGTCTCCTAAGGCTGCCTGAGCTGAATACAGC

a score=10609
s chr3           154591068 415 + 160039680 CCAATGGCACCTTACCAGCATGGTCTTCCCTCGCTTTCCCACGGTGATGCCAGAGTTCCTGAAGCCAGAATCAATTGCCACTGAGTGCTGTAAGAAAACATAGCACCCTAGGTTGTGGTGTGCCAACAAGCCAGACCCTCAGCTGAGTCCCATCGGTGGCAGAAACAGATAACTATAAACCCACT-----------GATGTGCTGGGCTGTGTGGACTGCGCTTCAAAGCC--ATCACAATGCCTGTTACACACACCCCAAGAGCAGCCTTGGAAACGTCACCAACAGAGGGTAA------------------CACAGG---CTCTGGCCAGTGACCGCAAGCT----ACGGCTGATGACCA------AACCATGCTAGACAGAAGCAAAC----------------------TTCAAACAAATGAAGCGATTTCTCTAAGAAAGGGGAAAGCTCCCTT-AGCATCCTTTCCAGTCCTGAAG
s HiC_scaffold_1 141598877 473 + 233722169 CCGAAGTTGCCTTACCAGCAtagtctttcctttctttcccactGTGATGCCAGAGTTCCTGAAACCAGAATCAACTGCCACTGAATGCTGTAAGAAAATACAGCTTGTTAAATTCGGATAT-TCAGCTACTAAGGTCTTTTGTTCAGTTCTTTAAGGGGCGGAAATATA----tatacaccccccccccccattaagGTCTTTTGGCTT---TGGAC-ATGTTTAAAAGCCCTATGAGAATTTCTGTTAGAGATACCAGATTTCCAACTTTAGAAATGTCATTGAGGAAGAGTAAAACTAGAATTCAACAAAGCACAGAGACATCTGGCTGGTGACTATTTCCTTAAAGCAGAAGATAACCAAAACACAATCATGCtatataaaagtaaacaaaaaaacccccaaaatgcTCTTTTATATGAGAGGGATGCTTTCTCTAAGTAAAGACAGAGATTATTTCAGCATCCTTTTTAATTCTACAG

a score=7320
s chr3           154592816 1138 + 160039680 CTGTGATCTCTTCACCACTTCTCCCCTCAGGCTGTCTAATTCTT----GAGCGGCCTCATCACTCTGTTAATGCAGAAGCTAAAACAT--TTTGACTCTGTCACCCTCTCATGTTCTTTGG---TGTCCTCTCAGGCCATGCCACCACACTCCAGGACACTACAGCTGAGCCCTAATATACTGTGGCAGAACTAGGCTCTCAA---AGTACAGTGCGCCAAGCCT--------TTGCAGCTAGCCCTTGCCTGAC----------------AAGGCAACCA-----GACCTCTTCTGGCCTAGAGGCCTCCATCTTCCTCTCTCCTCATCCCCCCTCCCCTCTATGGCCTGCTTCTTCTGCTCTGTGAACACACCAGACCTTTCT-TGCTTCTGAAACAGGGAACAC----TCTAATCTGCTCGGAATCTTCATCTCCCAGCTGCAGGCCTAACTCTGCTTCGTCCTTTTCAGTCTCAGCTTCAGGGAGT-TCTTCAGAGCAGCTTG------------------------------------------------------TGAGCAAGGACTGCACACAGC--------------TCTAC-------CCGGATGCTCTGTGG-CTCATGATTTACTAA-------------------ATTATGTT------------------------GCAATGAGAC--------------------------------------GACTCTGCATGTAATGGAGTAAAAGGTGTAG--GTGAGCAGGGAGAC--CTCAGACATGCAGTTCTTGAGCT-CTCGTCTAGAACTCAGCCAGAAAACCAAAGACACAGCACTGTGAAATCCACATGAATCCTCCCGCTGAGGGAGAC--------CGCGGGCCAGG-------------TGTGGGTACTCATTTTACTTTCCCAGAGATGACCGGGAGTCCCTACTCCTAACACTTGACATAAATAGCTAGACCAAGC---AAACATATGAGAACAATTAAGTCAAAACA-----------TTAG---CTGAA-----TCAATCAACATTAAATAATTTT-------------------AAAAGGTGG--CTTAA-AGCTTAAAATTA-----------------ATTCTACTGAA--AGACATCTCAATTCAAGAGCAAGTTCAA-CGTCTTACCAGGGTTTGTGCGTCCTGCAGTGTCCGGCATTGCACATGGAGGATAAAAGGTTCAAACTTCAAAACAGCTTCGCTGGTTGCACCCTTCAGAGCTGCCATCTGAGGGAACCAAGGGTCAG------CATGAGGTGCGGCTG-----CCCAGCCCTGTCCTGTCAACCTGTTCTCCCACCCACCTTCTGCTTCCTAGACATTCTAGCTCTCACTACC--CACTCTG--TCTGAGACATCTGCGTCCTCTGCCCTC
s HiC_scaffold_1 141600527 1374 + 233722169 CTGtgatttcctttcctcctcccccttgGGGC-----AATTCTTCTCCAGGAAACCTCACCATCTGACTGACTCAAACACTAAAATATACTCTGAGTCCATCCACTTCTCACCTTTTTCAGGGATATGCTCTTAGGCTACTTC-CCAC---CCGGTGCACTGTGACCGAGTCCC--TGTGCTG-AGCAGAACGGAGGTTTCCAGATAATAAACCGCATCAAGTCTCATCCCACTGACAATTAGCCTTTCACTAACTTTCCCTTGCACTTAGAAACCAATCCATAatgacctgatcctgtct-----cccctCTCTTCTACTTT--TGGTCCACTCTCCCCTTTCCACCTCATTCTTTCCGTTCTGTGAGCACGCCAAGCACTTCTCTGCTTCTGAAACTGTGTATATAACTTCTCACCC-CTTGGAATGTTTACTTTCCATTTGTAAATTtagctctttctgttccttttaagTCTTGTCTTAAAGAACCCTCTTCGGGGAAGCCTGGTCTAATGGCCACTTTTCATGCTATGCTCTATCTCCGGGTTGCTGTATTCCTTTTGTGGACATTTTGCATCCAGCAGTTATTGTCCTTATTTACAGTACAACTGTTTGTTCTGTGGTCTCCTAACCTCCAGAGGAAACCTGATGGTCTCTCATCTTGTTCATCTCTGTGCCCAGGTGCCTAACACACTGGGACTCCATGCATTCTTGTAAGTGAAGGCTGTGATGTAATTTAACTTTCTATGTAAACATATAAAAGGTATAACAACAGATAGGGGAATGAAACAGAACCACAACTAATCACATGTTTACCTAATACTcacttaaatgaagaaaaatg-----------aacttaTATAATTACTTT---TGAGGCAGACTCTTGCCACCTTGGCCAGACTGCCCTTgcatttgtg-------attctcctgtctcccaATTGGCTGGga----cta----taaaat---acataaaatgctgAAGTAAACTTCAACCATA---GAAAGGTCAAGCAGAAACAGAAACCCTAATTTGGATACTGAAGTTTGCCAGTGATTATCAGGTACTCTTTTTTCATAATAGTAAAAGTAACAAATAGATCTTAATGGATAAAAATTAGGACagtaaatgtgtgtatttttcaaGATCAGACCTATAAATGC-----CAAGTACAAACACTTTACCAGAATCTGTGCATCCTGTAGCTGCCGACACTGCACGTGAAGGACCAATGGCTCAAATTTCAAAACTGCATCGCCACTGGCTTTCTTCAGAGCTGCCAACT----AAACAAAGGATCAGTGAGAACATCAGGCACAAGTGTGTGACTCAGTCCTTCGGTGACACTTTGGATACCATGTCAGTTT----TTCCTAGa-----tagctgtagataccttcagcCTACTTCTGTAATAcctttttcctctgctttc

a score=15054
s chr3           154594037 1564 + 160039680 ACACGAGAATGCTGGAACCAGCCACACCT--CTTTGTGTCCACTTCTCTCCTTTCCTCATTTCTGCAGAGGATGGGGCCGGATGTCCACAGGGACCCGGAG-GGAAGGTCTCTGCCTGGTACAACCTTCCCTGTGCTCACT-------CTGCAGGCTCAGAGACGACACACTGGGCACAGCCATGAGCGTGTCC-AGAAGGGATCGTGGTAAATGATATACT-CTTATTTCCAACATTGAAGCTAGCAA-------GGCAGAGTGAAGTCCCTTCTTCTTTTATATTTTTTttaccaggttgcaaagttattaaataacagagctgaa-tgtgagatttgaacccagTGAG--------CCATG---------------------------------------------------TGCCCACCCTCACCTCTGTGCTGC--------------------TGAAGAGGCA-------------------GGCCT---------------------------------------------------------CCCTGC----------------TGAGTTGCAGA--TCACTTTTTAACTTA------AAAACTTACCACATCGTCTCTCGCACACGGTTTGTGTGTGACCAGCAGCCAGCAGCAGTGTTGCTTCTGAACTCCAGAGCCTTCTGTGCTCTAAAATGACA-----GACAACTCAACTGTAAA--ACTTAGCAAGATGAGTACATTTGCATTGTAGAACATGGT--GGGCATTCTTAAGTTAGTACTCAGAAAGATGACTGAAAAATAATTCAGTGTATTTTGGGTAAAGATAACCTAGGAGAAAAATCAATTCAAGTAACTT---AGGGCTCAGATGGTAAAAGTACTCAGGTGTCTTCAGAAACAGGGGCGTGCTTTTGGTTTGCTTCTGTGTttgtgttgtgctgctggggatgaaacccaagatcttatgaatggcagctgagcacacctaccctgggtcacaAGCCTCTCTGGGCATGTGTTTGCTGGAAGAAAAGGATGAAGGACTTATATGTTAGCAGTATTTCACCATAAAAAAGTGAAAAAGGGAGAAGGCACCTCCT------GTAGAACAG-GGTGGCTAACACTACGGAAGGCCGACCATTTGCT---GACGTCTGGGATGGGCACACCTTTCGACATGTTCCTCACCACT-ATGGAAATGTAT-TTGAGATCCCTAAAGTAGACTGCATATGCAA-------AGCAGCGAGGAGCAATGTGTCAAAGCTCTGGAGAGGCTGTCATTCCAACAGCGACCTAAAC------ACTGCTTCTTTGCAAATTCTAATCGGTATATACAGATCCTTCCCTCAGAGT-CTGCAAAGGGAGAGCAGAAAACCACACACATGAAGACCACCGCATCTCTACAA--CAACCACGCACACAAAG----CTCTGGAGGCTCCT-------CTGGGAGCTGGTGGGGGAAGCGTGGGCCCTGAACGACCGGTTTTCATAGTGAGGCTCTAGGAACATGG----GCTGGCTGTTATAAACAACCTCCGAGCCAAATGAGTGGTTTATGCTTAGCAAATGTACACAATGTCACACCACGACTTGGAA--------CATCTCTGGCTTACCTATGTTTTCTCCACCCTGATTTTTTTTTTCACTTTCCTTCTTTTCT--AATAAAGCAGAGTAAAAATAAATAGCCACCAAGTATAA---GATACATAAGCTAGACAAGGTTCAGAAAGCATCCTATGACAACTCAGAATGGACAGCCACTCTTAAGTGGGCACTGTGCTTGTCTGCA
s HiC_scaffold_1 141603708 1642 + 233722169 ACATACGAAAACCTGAGCCAGCAATGACTGATTCCATATTCTCCTCTGTCCTTTC----TGTCTATATAAAATGGAATTGAATTTCTAAATTCGCCAGGAATGAAAAGTGTCTGGTTAATACAAACTAATATAAACTCATCTAAACACCTgaatttaggaaaataaataacCGAGCACATATATGAAGATTTCCCAGAAGCAATTCAGGTAAGTAATGTACAATTTATTTATATCAGTGAGGCTAGCAAACGCACAGGCAAAGCTAATCCCCTTCTCCTTCAATTATCTGTTT--CTGGCTACAGAGTTATTAAATGACAGAAGTGAAATTCAAAATTTGGATCCAGTATGTCTGATGTCCATGAACTTTCTGCTATATCCAAAAGAATGTGTTTTGTTGAGTCACAGTAAGTAATGCctgcatacatatttatacttCCACTTTATCTCTTCCAACCCTGAAAAGCCATCGTAATGAAAGCTTTCTAGGCTTTATAATCTTCAGTCATTATAATTATGCACATAAATCACCTTGAATGTCCTATTCTTTCCATGCATATTTAAAGTAACTATGAATTTAAAAGTTTACTTATAAATTTACATATCAAAACTTACCACATCCTCTCTTACACAAGGTTTGTGGGTAACCAGCAGCCAGCAACAGTTTTGTTTCTGAATCTCAAAACCACTTATACCCTACaacaataaatacaataatttaaTCATACAATACCTGTAAAAATAAGTA------CAATGCAGAGCATATTAAAGGC-Ttcctaaattaataaatttaaatgttaatg-aaaatgaTTCA--ATATTTTGGg--------gcacaaaacaaaaatgaatcaaaataacttgacatgattttaaagataaagatattta-atattttctgaaata------tgatttt----------------------------------------------------------------------------------ttataAGC---------------------AGAAAAGAATTATAAGGGATTT-TACACTAGCAGCATTT------------------GAGTTGTATTGTAGCTGTTTTATTGGTAGGATAGCACTGTCCAGTACTGCACAAGGcctatcattctttatagatatctgtgctg------ttttttaaaactttcctggCTTCTGGTGGACATACATATTGAGATTTCTGTATGACACTTCATCTGTAGTCCCACTGGGAACTAGAACTAAAAGTTCAAAGTTTCAGGAAGGCAAAGATCTTAACATTAACTGAAGCCAGACAAATGTTTATTTGCAAAGTTCTATTAA-ATATACAGATCCTACCCTTAAGATACTCGAGAGGGGTTCCAGGAAACCACATGCACAGAAATCACTATATTTCTACAAAGAAACTATTTATACAATGGGCCCATGGGAGGTCACTGTCTGGCCTTGGAACCAACAAGAGTTGTGTATCTCTTGAGTAA-AGATTTTAATAA------CCTATGTACTGAGTTATGCTGGCTCCTATA---AACCTCAGAGCCAAATGCG-GGTCCACCCTTACCAAGT-TACAGGACGCAGTGGCATGATTTGGAAACGAATGTCATGTCTGGGttatc----ttttgtgta-------ttttttatatgCTCCAAATCCTGTCTGAAATAAGGCACACTAAAAATATAT---CACAAGGtataacataataaataaaatgaaagaggtTCAGATAAAGTTCTGAGCCAGTTCAGAAGTGGTCATTACTtccaagtgtg---tgtgtgcgtgtgca

a score=18680
s chr3           154596843 2519 + 160039680 GGGCCTCACCCCGTCCAGAAGGAGGATGCGCCCTGCGCAGGAGCTGGTGGTGAAAAACTCTTCCCGCGAGTTCAGGAGCTCCACCACCTCCACCGCGTCCTCGTCCACACTGCCCTTGCGGCTAAGGTCCGCCTTGCTCAGACTCTGCGCCTTCCACCGGCCGAACTCCGCGCTACGGTCCATGAGCGAGCGAGCGAGCTGGGGTCGGCTTTCTGCTCTGGAATGCGCCTTCTT---CTCCATGGGCGCAGCCATATTGCCGCCA-CGGTGGCCGGAGAGGACCAAAGTTCCCCATTGGCGCAACCAGGAGCAAGACGTGCGCCGCCAGACCGTACAGGCGTAAACCGAG-AGGGGGAGCCTAG-CGAAGTTAGGGAAAGCCAGCCCACCTCTTTCCCCACAGACCTTCTGGAGCTTAGGAGGTTTTGTTTCCTACTCTAGAGGAGGGTAAGTCACCCAGGA--------CCGCAAGC-----------AAGGTCC------TACTCTTGTCTGCCGGGA---GGCttttttttttttttttttctttctttCAAGTTCTAGGCTCCAGGAGATCTATCTGCACTGGAGAACTGC----------ACAGCAGGCGGCCGGTGGTTCCGACTGGGGTAGCTGCCTACTGATGCCTGGGGATTTCTGCCGCCACCCAGGCACTCGCGCCCCAACTCCGGGTT--------CACAACTTCCCAGGTGCAGGTAGAGGAGGTCTGTGTTCTGTCCTCCGGTGTGTATGCAGTGGGCGTTGTTATTCCTATTTTTAGACATAGTGGCA--CCCACCTACAGTAGTCTTCAaaagaaagaagagagacctagagagagtcagagacagagggacacagagagggacagagttagaaaaaCCTAATACATTGTTAACTACATCTTGCGCATTTACAGTTCCCAGAGTTCCTGCCTCAGTCTTGTGACCAGAAAAGACCTGTTAATGATTGAAAGTGCAGAGGCCACT---GTGTGGACTTCGTGTCCACCTC--------GAGCCCCTGAAGCCACCATAAC-----TCCCCGCTGGCTCCTGCCCTAGGAAATGCAGCTTGTAGCAAGCAGCATTCTGTCACACTGAAGCGGGGCCTGCCCTGTCCATGAGATGCTGCAGGGGTACAGAGTGATC----AGTGTGAAAGCAAGACCGTGACAACATCATATAGCCAGAAGACTTGGACTGG-----ATACTTTAATTTTCATCATTTATTCGTGTTTCCAAGT----TAATAGTAAGCCACAAGCTTCCATGAGCCATTCTGGAACAGTGGCAGTACATTTTATAACTATGAGGCCTCTTTTTTAGTCTTCATTTAAAACTCTCTCTAGAAATCAAttttattttattttgctcttttttccacaccgtgtgtattcctggtgcactcaaaggacagaagagggtattagatctcctgggactggagttagaataggtttcgagcctgagtcaccaagttggtgctggaaagccaaatgaagccctcagcaagaggataacaagtgttccttgccgctagccCTAACCTTGGCCCTCTGCACTTCATTAGTAATATGTCTTTCCTCTTGAGTTTGAGAGTTGACTCACTAACTCTATGTTAAGATATACATACGTCTAACATATCCCCTACCCATTTAACTTTCATTTAAACCA-ATGAA-------------TGAGTTTCAATCAGT-CTAGAGGAGGAATTTTTAACTGTGTATGTCCTAGAAATAAAAAGTA------------------AAATAAAAA-TAAAACAAGGTACTATAAA------CAGTT-TTCACAACATATATATGATAGATAGAAAAGCCCATTTAAACCATAGCATAGTTAACAAAC-CAAAGAaactaggcatgatggtgcatatactaggaaagctgaggcaggggagttatccagagctccagaccaacc---tggactacagtgtgagatgctCCAAAGTGGCAGAAAGCTCCTCCTTGTCCAGTGTGAGACCATGAGTAACAATAAAGCTTACATTGTTGCAGCCAATCCCCACAGGTAGCCTAGACTAGACA----ACCTATACCATCAGGGTAG------ATTAGCTTTCCCTGTAGAACCATGTCTTTTATGTTTCTACTGTATTTCCCAATTTGTAGGCATTTGAAGAAT------ACCCAAGTAGACGCCTTTATTAGATAATATATGCCCCAGCCTATAGCTTGGTGACATTTCATACCCAATTGCTCATA---------------CATTCCAGAATTCATTTCAGAGGCATGAAGGACAATCGATGCCAACATTTCCAAAAGTGAAGTTGGAAGATTCTAAGTT---AAGGAAATAAAATCAGCCAACATTTAAGGCACTGAACTTGGGTTCTAGCCCTGCTGTGACCTCTGTGACCTGCCAGGGTTTCTGAACCTCTT-CTAACAAAGGCAAAGGTCGTCTCCTTCATAAAAGGAAGGCTGGCTTTTTAGTTCTGCATAGCATCTTTTCCCTTTGGTCTTTTGTAAAGATAATAAAATGAATGG----------AGATTTAAAAACTATGCTTTTTTAGGAAAAGCTCACTATTATGAAGGCTTAAGTTCATAACTGCTGTTAGTATATCATCCTATTTTATTCTTGTGGTTCTtgtc
s HiC_scaffold_1 141607167 2187 + 233722169 GGGCCTCACCCCGTCTAGGAGGAGGATGCGGCCGGCGCAGGAACTGGTGGTGAAAAACTGCTCTTGCGTGTTCAGGAGTTGTACAAGGTCGACCACGTCCTCGTCTACACTGCCCTTCCTGCTGAGGTCTGCTTTGCTCAGACCCTGCGCCTTCCACCTCCTGAACTCTGCGCTGCGGTCCAT----GCGTGATGGAGGTAGAGTCCGGGCTCTGCACTTTCCCGTACCTCCTCCCGCTCAATGGGGGCAGCCATGTTGGAGCGAGCGGTGGCCGTCTAGGTCCAAACTTCCTCTTCGTTAGGCGTTCGAGAACTTCTTGGCTCTCAGGGTAGCAACGGCCTTGAGCGGGTAGGCGGAGTCTTGCCAAAGTTGAAAACAGCCTGTCCTCTCCCTCTTGTGCAGTCCAAGGGAGCCATAGCAGGTTGTGATCCCTGCTCTGGAGGCGGgtaagtggttttaaaaaagGCATCCCCGAGCTGTTCAGGTTGCAGGTCTCCGCGATGCCCCTA-CTGTTGGGATGGAGCTAGATTGTGTCTGCGCCTCTTTCCTGCAGCCTCT------------GTCTGTCCGCTCTGTGGACCAGTGTCCAAGGAGACCGCAGACCGCAGCTGTTCCTCCCTGG-------GTCTGCAGATGTCTTCCGCTCTGTGCGGGCCCACATGGACGGAGAGCGCAGCCCTGGGTCACCGCGTACATAATCCCCTGGCTGTCGACTGGGGTG--CTGTATCC---CTTTTGGAGAGCA----------------ATGTATAGTTTCAGTGACCCTGCCATTCCCACCTAGAagaatcttagaaaaaaaaaaaaaaa---taggacga---------------------------------------------AATGCCCTGCGA---AGATCT------------GTTTGCAGAGTTTCT-----------------AGAGGAGCCTTGCTA---GTTGAATGTGCAGAGGCTGCTAGAGTTTGCCCTGCTGGCTCGCAGCTGAGGGCAGAGTCTGCGAGCTCAGCAGCACATTCTATCCTGCTAGCTCC--------------CAGTTT-TGGAGAGCAGC---CCACCCCACTGCACCCCAAATCACC--GTCGA--AGATCCTGTGGGGCTTCGAAATGATCCCTTAGCGTGCTC-----CCCCCCTCCACGTCA-ATGGCC--AAGATTCAGACTAGTGAAAAGATTTgagtcaaaaaaatttttttaaacatttaaatttactaatCATAAGCAACATGCTCACAAGAGTCGTTTTTAAGCAACAACAGCATGTTTTGTAATAATTGCTTTTGTTTccaagttttcagt---------------------------ttttattttaattttcttttgccattttacTTACTGCTCTTGCA-----------------------------------------------------------------TCATCA------------------------------------------------TGTGCCTTTATGCTGGCTTT------------------------------------------------------GTGAACTTATTCattctgtattaaaataaatg-----ctCACATTTTCCCCTAtcgctttattttcatttaaatcacATGGACTCAAGTATAGCCTGA---TAGATCACTGTTAGAAAAAGAATTGTAAGTTTTGTAGCTCCCACACTTGTGAAGTATGGTTGGCAAACTTTcagaagtaaaaagtaaaaccagTTTATTTAAAAGTACGCATTTGGTCAGGACAAAGGCCTGATGAATA-AAAAGTCCTCTTGG--CACAGTTTAATTTACAAACACAAAG-------------------------------------GGCAGAGAAG------------CCTGACCTGTCCATTAGGCTGC------AAATGATTCA----------------CTGTTTACTCAGGGTGCTGCA--GAGGAAT----CTGCTTGTAGTTTTGAAGTTTATCTTCACAAAGCTTCTGTGCTAGGTACTATCCCTAaatta-cagataagaaaattattaattttcctACTAGAACTGTGACC----TATTTCTATTAGGCTTCCTGATTTATGAACCTTTGAGAAAGTGTGAACTCTGAATAGAAAACTTGATCATAATATATGTGATCCTCCATGTAGGATAGTTAACTGTCAT-CTCTGTAGCTCAGAATCTCATGCTGTcatcattataaaaattatttctaagaacT------TAATCTATGCTAGTACTCCAAAGACTACATTTAAAGGACTGTACAATGGGAAGGGTGT-GGGTTAGCAAATATTTAAGATACAAGACTTGAATTCTAGCTCTG-TGTAAC--------CCTGCCCAAATCTCTTAACCTCTTGCT-----------GGGTATTCTCATTCATAAAATGaatggtgatttt---------------atttttt-------atttcttcataaaataacAGGTTTAATAGCATATTGCTAAAGGTGAAAGACTgttgtttttcagaaaaagaac-------ttAAGAATTA---TCCTAATTGCTGTTATTTGgttacattattttattctttttgtaattCTC

a score=6426
s chr3           154602945 185 + 160039680 ATTCCCTTTGATACAGTGAGAGTGTTATGAAGCAGATGATGAGACTGTGATTGAGTTCAGAGGTAATAAGTGTAGGCTGGAG--CCATCGGAACGCAAAGGCTCAGTGGGGAATGAGATTAAGAGAAGCAAAG-GGTGGCTGGTGCTGCCAGGACCAGG-CTGCCTCTCTGCAGAATC---AGGATAAAgtg
s HiC_scaffold_1 141609348 187 + 233722169 attCTCTTTGATGTGGCTCCTGCATTAAGAAACAGATGATGATCTTGTAGTTGAGTTCAGAGGCAGTGATTGTAGGTTGGAGATCAATCAGAAT-----GGCTCAGTGGGAAATAAGATGAGGAGGAGTTAAGTGGAAGGTAACGCTGTGGAGACTGTGCCTGTTTCTTTACAAGCTCCATAGGACAGAGTG

a score=60238
s chr3           154603704 3914 + 160039680 [encoded data, 4507 characters]
s HiC_scaffold_1 141610873 4017 + 233722169 [encoded data, 4507 characters]

a score=10262
s chr3           154611118 467 + 160039680 TGATGCTTATGTGGAA--GAGCACAGCACTGAGCTCAGGAAGTGCTCAGCTGAACTGCTGTAGCCTTCCCAGTGTCCTCA---TGCAGTTGAGGGGTGTCTTCTGGTGTCCTT---GTCTCCTTGAGCGCTTCTGTTCTCACGTTTCCTCTTGATAAAAC-CTGCATAGAGATTCGCTGT-TAGAGCTGTGCTTGTGAGACACTGAGCTGGAG------------ACATCCACATGGAAATGATGATTTCTCAGTGGAAGCTGGCACTGTCAAGGTCCCAGCCATCTTAGCCCAAT-----TGGAATCTCTTTTTCAGAAAGGCGACAGGGTCTTCTGCTACAGCACCGTCTCTGGTGGCTACGCGGAATTTGCTCTTGCAGCCGATGACACTATCTACCCCCTGCCCGAGACACTGAACTTCAGGCAGGGGGCTGCCCTGGGGATCCCGTACTTCACGGCCTGCCGAGCTCTGTTCCACAGGTGAGGTGGCAC
s HiC_scaffold_1 141616009 475 + 233722169 TAATGCCCATGAGACACTGAGAGCAGTGCCTGGCTTTGGGAGACCTCAGTGAAA----GGGACTCATACCACTCTCATCAGGATATGCTTTAAGGGCCTCTCCTTTTAACTTTCCCATTTcccttcagttttcttttcattggtttCCACC-AATAACACATTTCATAGCACTCAGtactctaaaattatttttatgagattATGAGATGTAAGAAACAACATGTACATATGTATGGTGGTAACAGTTTTGCTGTAGAGGATTATGC--------------CCATTCTGATGCATTATAAATGTGATCTCTTCCCTAGAAAGGTGACAGAGTCTTCACTACCAGCACCATTTCGGGGGGCTACGCAGAATATGCCCTCGCTTCAGACCACACGGTGTACAGGCTGCCCGAGAAGCTGGACTTCAGACAGGGAGCTGCCATCGGCATCCCCTACTTCACTGCCTGCCGTGCTCTGTTCCACAGGTAAAGGCACAC

a score=7424
s chr3           154613434 510 + 160039680 AACTTGCTTGGGGACACTTGGGGATTTCTACCCTCGAGGACACATGGGCACGAGGAACTCCAGTCCC----GGTTCACAAGTTCCACCA--------ACACACAGGGACGGCAGCTA------------AGCATTATAGTGTGATCCCCGTGCCCAACACAGCCTCAGGCAGGTGACAGATGCCCAGTGGCATATCCCCAGTG----GGTACTGCATAGACAGTCTGTGTTCATTGC-------AGCCGTGGGG----GCCATCATTGAGTCTTGGGGTGAGAGGACATTTGGCTCCATGTTAGGATGCAGCATCTCTTTGGGT----GTTAACTGAAGCAAGGGTAGAAATCCCTCACCGATGATGGGATGGCAGCTCCTGG-CTCCTCTGAC--CAAGAGC----ATGATTACACCTCTGCTTTTTTTCCT---------------GCAGTGCCCGTGCTCGAGCTGGCGAAAGCGTTTTGGTTCATGGGGCCAGTGGAGGAGTGAGTATCTA---------TTCAAGTTTGTATTCAAGCGAGCATGGAGTTATGGGTCTCACGTGATA--------GTTCTTGAAATC
s HiC_scaffold_1 141618597 560 + 233722169 AATTTGCTGGGGTAAACT-GGAGATT-----------------GTGGGAATGAAAGAGTCCAGTTCCTCCAAGCCTGGCAGCTCTACCACATAACATACCCACAAGCACTGCAGCACCCCTGTCAGAACAGCACCAAGTCTTGATACCAGCAcccagcacagggcctggcaTGTGACTGCTGCAGGGAAACACCTGCAGAATGAAGAGGTGATGGGGAGGTGCTCTTTATCTGTGACTCTGAAGAGCCTTTGGTATTTGATCCCACAGAGCCTGG-----AGAGTATCTTGAGCTT----TGAGGGTACATTTGCTCTTCGGGTAAGTGTTAGCTGGAATAAAAGTGGAG-----TCCTTGAAGATAGTGCAAAATTACTTGAACTTAATTAACTTCAAAAGATAAGGTGATGGAAcctatgcttttttttcctctttttttttttacgcAGTGCCCGTGCAAAAGCTGGAGAAAGTGTTCTGGTTCATGGAGCTAGCGGAGGAGtaagtatttatttatcttttttatgtttaaatttaaaagagcTTCGATTTGGAGGTGTCACATGACAATCAAGctgtttttaaaacc

a score=36444
s chr3           154614275 1583 + 160039680 CTTAATGCCACGAGGCTTT---AAGATGTAG-CTGCTAAGTAGAATCCGTGGCTGAT------GCATTTCTTACTTAATAAATTCAGCAGACCACCTCATAAAACAATTAATGTGGTAGGTTTTCCACCTGTGCTGGGAGTGCACCAAGA----CTGGCCTTGCCTCTGCCTTCACGTGGCATAGTTCTTAGAATTATGCG-----GCCTTTTAAGCTGTCCTAAACATTAACAGTAGTTGTTCCGTATTCCTTTAGGTAGCAAAATAAGGCTCATTAAACCTC-------------------------------CCATCCAGTGAGTGGTCAGCTTTCCTCCTATCCGGGTTCCCTGTTGTGCCAGCAGGCTCATACTTTTATGGTAACCAAAGGGTGCACAGTATATAGCTGTGTCCTCAACACCACAACCCAAGGCTGAAAGTGTCA---CTAGTTGGGGAAAGGACTGAGAACTCAGCACCTAAGCGC-TCTAAGGAGTCCCCAGGCATAGCATTGTCAGA---CTGCTCAAGCTCCTCACTGCTGCTCATTCTCCAGGGAGCATGGAGGAGAAGCCAGAGTTGTGCATTTGGAATTCACTAAG-------------------CCAGCAC---AGAGAGACACTGCAAATGTCGGAGACAA-----------------AACCAAGG--GCCTGCGGGGCGATGGCTCACCTCCAGGGAGCTGG---------------------GTGTTCTAGGGACCACATGGAAAGGAGTAACTCATTACCCAGCA-----TGCCCCACATAACGA-TGATAGCGTCCTGACAGTATGGCTCTAC-------AGTGGCCAGGTAACTCAG---AAAGTCAGGCTGCCGTGTGTCTCTATAGAGATGAGCTTCCTTATGGCACATCTGGCTTCCTCAGCGACTCGGAGATCAATCTGCAGGGATTTCACATGTCAGACTATTTACCAAGAAAGCCCAAAGTTGTCTCTGTAGGGCTTGAAAA-----GACAGCTAAACTC--------------ATTGTTAACCATCTCCAAAG--GCTGGTTTTGGATGAG-TTCAATTTAATCT--AATAACCGAAGGTTTG--AAACACACGTGTTTATTTAAATGGCTATGGTTGTCTAAGAG----CCTTGTGCTCTGTAGAGAAGAGAGATGTTCGTACAGTGGAGAGA---GAGGGTTTAGAGGAAATCCCTTT-----------ACACTCCTGAAGAAAGCCCTGCCACTTCAAAGGGATTGGTTTGCTTTTTTAAAAGGTAAAATCCAAACTGCTGGGTTTTGGAGCTGGCTGAGTCTGCTAAATCCT-GGCTGGCCGGGACAGGCTGGCGGCCCA-TGTGTGGATCGCCTCTGATCCT-CCTGCCCTATCAGAGGGAGACAGAACACTGGCTTTTGCCTGGCTTCTGTGTGTGCTTTCCGTCCTCACTTAATCCACATTCTTGCTGGATTATGTTGTGGGTTTAAAATGGCGT-GGATTTGCGAACACAGCCATTGTCCCAGTACATTGGTGGGAGA-GTCTCATTTTAGTGTTCTTGAAATAGATTGGAGAGAAATAACTGGCAGAAAATGCCATGCAATCTCTTGAAAAAATATTGTGAATCTAATTGTTGGCAAGAAAACAGCAGCCAGAGCCCTTTAGAAA----ACTGAGAGACTTTGCTCAAAGAGAGCTTTAGGTGAGATGTTTGCGTTAGGTCTGCACCTTAGAATGTGATTTTATTA
s HiC_scaffold_1 141619190 1706 + 233722169 ctttctgcagtgaagctttttaaaaatgcagtcttCTGAAGGTGATTCTTTGCCATTAGTTTAGCATCTCTTGGTTAATAAATTCAGCATAC-ACCTCATCAAA-GCTGTGTGTATTAGGCTTTCTGTCTAGATTGGGTGTGGACCAAGATAAACAGgccttgtttttgcttttgagtaGCATCTGTTGCAaggatatttattttagaattttaaacagTTGTAAAGGTTACTGTTAATT---CCATATTCctttagaaaaggaaataaggCTCATTAAAGCTTTACCTGTGTTGCCCCAGACAGCATGGCAAAGCCACACTGTGAG-----atccccctcccttccctgcttGCCTGCTGTGC--------------TTTGATGACATCCATGGAGTACACAGTGTTCAGCTGTGTCCTTAACACCACAACCCATGGCTTAAAATGCTAATGCTGGAGGAGGGGAGGACTCAGAACTTACAAAATAAGCCCCTCGTGGAAATCACCCTGTGCAGGCCTGTCAGAAAACCCTTCAAGAAACGAGCTGCCAGTCTGCCTCTGAGGAGCTTAGAGGAAAAGTTAGAGCTCTGAGGTTGGACTTTAACAAGAAATCCACATGACCTCTATCCTGTGCCTGGCAGAGGCTTTGGAAATTTTGGAGACAAGATTTCacattgtttcaaaacaaagctACCTAGGGCCAGACAGCTCACCTGGAAGAAGCTGGTTAACCCTTTGAGGGGGTTGTATGTTCTGAGGAGATGGTGGAAAGAGGTGACTTACTTCACAGCAGATTATGCCCTGAATAATGAGTGGTAGC---CTGGAAATGTGAATTTATCTCTAAAAGTGGACAGAGAATTCAGTCCATTTTCACCTTTTGATAGCTTTAGATAGAACTCAGCTCACT--------ACCTGTAGACCCCAAATAT------ATCAATTCTGAAGGATTTCACAGATCAAACTATTCACTGAGAAA-CACAGGATTGTCCTGAGGAGACTGGAAAAAATATGACAGAGAAACCCTGTCACAAGCTCCTCTTGTTTAGAGTTACCAAAGAGGCTATATTTGGATGAGATTAAATTTAACCCCAAATCACTGAAGGTCTGTCAAAcacatgcatttatttaaattgttctgGCTTTGTGAGAGTTGACCCCATGCTCTGTA-AGAAGGGAAAAATTTCAGTAGGAAAGAGACTGAAGAGTTTAAAGAAaatctctttttattctctttacccTCTTGTAAAAAGCCCAGGCgcttcactgtgatt--------ttttttaaaggtaaaatccACA-----GTGTTCTGGGGCTGGCTGAATTTGTTAAATCCTCGGCTGGTGGGGATGGGCAGGCATCCTGGTGTGTAAAGCACTTCTGATCCTTCCGGCCCTGTCGAGGAGGGAGACAGCGCTGGGTTTTGCCTTGTTTCTGTTTGTACTTTCTGTCCTCCTTGAATTCAGCTACCTTTGGGATTCTGTCGTATGTTTAAAACAGTGTGGGATTTACGAGCACAGCTATTGTCTGGACGTTTTGGCAGGCAATGCCCTACTTCAGCATTAGCAAGACAAGTTGAAGCCAAACAGTTGACAG-CAATGGTGCATAATCTAGTGAGAGAGTATTGCTGTTGCAATTGAGGACAAGAATAAA-----CAGTGCCCTAAAAAAAAGCTAttggaaaacttaa---aaatagaggATAAGAACATATACTTACATTAAATCTTtagtttaaaatgtgattttgtta

a score=16620
s chr3           154618415 641 + 160039680 AATGTGGAGACTATGTGATGTCAGGGTTATGT---TTTGTCTTTCAGGTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAGGTACACTTTTCTACAGTTT----AAGGTCAAACTTTGCTTCTGGGAGACTTACTTGGCTTTAAAATAAGTCATTTTAACAACTGCCTTCTTAACGAGTTAACATGATTTTGCTTAGTAAGTAACATTGTTT-CTGTTTTCATATCTATATGTTCTCTCACCCCTATAAATGTTTTAATTGATTTAAAAGGACAGGCATCTAGTTGTCCAGATTTTGCTGCCATGCTTGTAATACACTTGCGAATTAAATGAGACGGAGCCTTTCTAAAGTC-------------AACTGAAA------------GATCACGTTGTAAGTAAAGCTTGCAGCTACAAGATGCTCATAGTGCAGTTGTTAAGGATGTGAAATTCCCATTGCACTCGAGGTTCCCAGAATTACAAACCAGATGTACCTATCCAGGAAAGA----TGCCGCTTGCTAATGGGGTCCTTGGGTACGGATTATCACTATTCCACCCA
s HiC_scaffold_1 141623435 605 + 233722169 AATGCAGAGAATATATAA---CTGggttacatatatttattttttaggttgGATTGGCAGCATGCCAGATTGCTAGAGCCTATGGCTTAAAGGTTTTGGGGACAGCTGGTACTGAGGAGGGACAAAAGGTCGTTTTGCAAAATGGAGCCCATGAAGTATTTAATCACCGAGACGCTCATTATATTGATGAAATCAAGGTAAAATTTTCTATAGTTTTACAGAAGTTGCACATTTTTTATTGGaaacataaatgac--------------ttttatcaacTTGTTCATTAACCAATC--------------------TTAACGTTACTTGCTTCTTGTATGCCTACATGTGTTTTTGTGACTATGTGTGTTTTAATTAA---------ACAGCCGTTCACTT-CACAGCATTCACTGCAATTACTATATTGTG--TGTATATTAAAT-----GTAACCTTTCTAGAGTCTTATAGCTATACAGACTGATGTTCTTTAATGCTAATCACATTTTAAGTAAAGC-TGCAGCT-----------------TTGTATTTACAGATGTCATGTTTTCATGACAGGTGAAAATTCAGAGAATACAAACTGGATCTCTCTAGgcaggaaataaattttttatttattacctGTGTTCTTGGG-AGGGATAATTACTGTCTCATTCA

a score=33520
s chr3           154621465 2372 + 160039680 TCTTTTACCATGCAGATGTCTGTTGGTGACAAGGACAAGGGGGTTGATGTGATTATTGAGATGCTGGCGAATGAGAACCTTAGCAATGACCTGAAGCTTCTGTCCCACGGAGGACGGGTCGTCGTAAGTA----TGACTTCAGCACCGTGAA-TTTCACCAGGGCTCAAGCCCGTTTTACAGCAACCTTCAACTGTGTACCTGTTGTTTCCATGGTAGGTTGTTGGCTGTCGAGGTCCCATTGAGATAAACCCAAGGGACACCATGGCAAAAGAAACAAGCATCATTGGGGTCTCTCTCTCTTCTTCCACCAAGGTAAGGAA--------------------GGGAAGTTCTGACTGTGCTGGTCAGCAGACTGACAGTTTAGTCATGCTAAGCTAGGTCACCTGGCTGGAG-----------AGGTGGCTC----------------------------GTGCGAGCCGCAGTAT-------GGAGAGGGAGCACTAGTCAGTTACAGCTGTGTCAAGACGG-------------------------------------------TACTTCGTATACTAACACTGTCCCAGGCATATGCAAATGA------------CAGAGAATTAAA----GTGTGGATCTGGGAAAACTGTCAATCTTCAT--ACTTGCAAGGGGACCTTTCGGG-----------------------------------------------TCATGTGGTCCACTGCCAAGAAACAAATGACTATAAACACACACTTTTGTTTTCTTCCAATCCCTTTCCTCTAGGAGGAATTTCAACAATTCGCAGGCCTTCTCCAAGCAGGAATAGAAAAAGGTTGGGTGAAACCTGTGATAGGTTCTGAGTATCCATTGGAGAAAGCAGCCCAGGCCCACGAAGATATCATTCACGGCAGTGGGAAGACGGGGAAAATGATTCTCCTCTTATGAGACCTGTGTCACTGGGCTCCTTCTTCCTCAAG------TCTCTGCACCACCATCTTTAAACAGT--------GTTATTTGATTGAG---GTTCACGTATTAAAAACAGGACTT---TAGGGAGTAGACACAGTGAGTGACATAATTGCAGAGAGCAGGTGTGCCCAATGGGGTCTGCGTGCATCACAAAACTCTTTTCTTCCTTTTTCTTCATTTTCTTAGTTTGGTTGGATGTttttgttttgtgcttgagacaggatcattctctgtagttcatgctggccgtgaactcacagtgatctttctgcctcagccgtctaaatgctgggataatcagtagtgatgcacactaccacacacagctTCATCTCAGACCTTCTTGTCTGA-------TTAAGTTCAGACCTTTGAATAAAATGTACAAGTTCAAAATGGTCCTCTACTGACCTTCCTGGGCTCCCAAGCCTGCTACTCTTTAGGGAG---TCACCTGCCCCCTCAG------CCATGGCTGTCTTGGGCCCTGAAGACTTTCTGGGCTGAAAAATAT-CCTTTTAAAACTAATGTCATCT-CAGTCTGTAAGCCTCTGGAAAGCTTCGGCAAAAATGAGCAATA-CTTGGGAGACCTCCCAGTCAGCTTTCCTAACATTTTTGAGAATATCAGAATACTGCATGCCGGTCACCAGCCACCTGTAGTCTGGGGGGTCAGCAGCCACCTGTAGTCTGGGAGGTCACCAGCTACCTGTAGTCTGGGAGGTCAGCAGCCTTATCCTGGGTCTGTG--GTCTTCAGTATGGTCACCCATCAAATGCTTCATGGTCACTTA-----------------TAGTTTGCTGTAT--ATGTGACATGAGTCTCATAGTTTCACTTAAAATTGTAAGTTCACAAATTTAACATGTTAAGACCTGTCTGCTTTGGTTTTCATAGTATCTTAACCTGGAGTAAATTCTGTAGAACACTGAAGC----CCTTGTCTGTCTCGTGTGTTTAACACAAACCTCATTTCTGCATAGCTCCTG--ACCCTGTGGC--CTTATTACACCTGCTCTATCCTGGAATTCTT--TTAGACTAAATGGAAGGACAGCCTTTTAGAAATCTCA-CACCAGCATTATGTCCAAGGAGATGATGGTCGGCTATTCACTTTTAGTAGTGGTTGGTTACTCACTTTTGGTGTGTTTTTCTTCAAACGAACACATCCTCCCATTTCTACACCCCGCCCCCCACCCCCACCCGTTTCCACATCCTTCTCTTTCACATCGTGTGGCGGATTGTCTTGTTCCATTTGTTCTGTAGATAGAGTAGCAGGTTGTAGTCTGAAGATGGACCCTTGCCAAGTAGTGAGTAGACA-TCATTCCTCATGTATTTGAGGGATAGCCACTGATGGCTTGAGGTGTTTGCTGTAATCATAGCAGTTTAGCTATTAACATGGTCTATGCTCAGCCACCATTTATCTTACTGGTTAAC-TGTCCTATAAAATAACACTTTAG--CAAAGTTTCAGGAAGACAATATCTCATATCCTTAGAGTGGGGCTGTAAGCACTTCCTACA-TGGAGGGCTCTTTCTTGTGTAAAAAGATAAAGATGTGATGA---TTGAGTGGACAGCTTGACCTGTTTGCACACTTGCCT
s HiC_scaffold_1 141627136 2288 + 233722169 TTTTTTACTAAACAGAAATCCATTGGTGAAAAAG------GAGTTGATGTGATTATTGAAATGTTAGCTAACGTAAATCTTAGCAATGATTTGAAACTTCTGTCCTGTGGAGGACGAGTGATCGTAAGTAAAGTTTTCTTTACCACTTCAAAGTTTCACCACAGTTTAACACTATTTTGCAGTAATCTTTAACTGCAGGCATATTGTTTCCATGATAGATTGTGGGCTGCCGAGGTTCCATTGAAATAAACCCACGGGACACCATGGCAAAGGAGTCTACCATAAGTGGAGTTTCTCTGTTTTCATCAACGAAGGTGAGAAAAGAAGTGATTTGGATAATTTGGTAATTTGGTACTTTAAATGTCAATAGACCAAAAGTTGG---AATTGAAGCTTACTTATCTGACTAGAGGAAGTAAGTAAAGGTTATTCACTGGGTAATAGAACAGTCTAATTTATAACGTAAGTCAAGACACTTGAGAGAGAAAGGGAATAAT-GTTAATAA--------TTAAGatgggggaattttttttttttttttttttttttttttttttttttttttttttgtaaactaaCATTCTTCCAGGCAAATGGAACTTAACGGTTATCCTTCAGAGAATTATGTTTTATGTAGTTTTGGACAAGTTTACAAGAGTCACAAATTTTTAAGAGGCTCTTTGTGGTATATTTCTTAATTCTGAAGTTTTTTTCAGTGCTTCTGAAACTTAAATCATATGGTCCACTGC-----aacaga------------------tttgtttt---------tctttctcttaggaAGAATTTCAGCAGTTTGCATCCACTATTCAAGCAGGAATGGAACTTGGTTGGGTGAAGCCCGTGATTGGGTCTCAGTACCCACTGGAGAAGGCTTCCCAAGCTCATGAAAATATCATTCATAGCAGTGGCACTGTTGGAAAAACGGTTCTTCTGATGTGATGCTGCTTTTGTGGGCTTCCAGCGATATTAAGTGAttttctttcctccatcttcTTTACATTGTCACTAACAATTATTTGATTCAGTGAATTTGCCTTAACAAAAcaagatttttctttaaagcaaaGATGGTGG------------------------------AGTAAAGTTTATG---ATGGTAATCATTTTTAGTGCCTT--------CTATCTTAAGTCAA--GGA------------ATCATTGCAATAGGA----------AAGAACATGGTAGT--------------------------------------------GGGCACTTGGCATTGGTgta------------------catttcagaaattcttaaCTGATACTTGCTTAATTCTGTGCCATTGACTGAAACATGCTAATTCAAAGTAAGACT---------------GATTGCCAAAACTGCTAATCTTTATTAAATGCTCATTAATCAGTTCAGATTAGCCCATAGCTA-ATTGGACCCCACAGACGTTCTGGACCAAAAAAAATCCCTTTTCAAACTAATCTCATTTACAGTT-----ACttacaaaga--------atgaataaataacatcCCAAGAAATTT----GTTGAGTTTCCTAATATTTCTCTAAACAGTGGAAAATTCACTGC--GTTA---------------CTGGGTGATTGTCAGTGACCT------------ACCATAAGTTCTCTGAAG------------GCAGCAGTCTGTTGAGTCTATGAAGCTGGAAAGAGAGTCACCAAGCAAACATTTCATGATTGATTAGATTTTCAGAGTAGATTTAGTTATCTTTTTTGGTGTGATGtgagttaaaaattttttatttaa----caatttCACAAATTGGACATATTAAGA-CGATCTGCTTTTG-TTTCATAACACAATAATCTGTAATAAATTCTACAGAGCAATCTTGTGTCACCTAGTTTGGCTT---TATGTAGTACATGCGTCA------CATTACTTCTGATACCTAATGGTTGCTTACTAATGGTGTCCTGTGTTGGAAGCCTTCACTAAACTAAGTAGGGGTATAACCTTTTAGACATCTTGCCATCAGTGTTATGTCCAAGAAAATAAGTTTTggtgatttattt------------------tcatttt-----tgtttttcatcatgtGAACACATCTTCCTGGTT-----------------------------------------TTTGCTGCATTTCCTGGTTGACGTTCTTACCTGATTTATTCTGTAG--AATGTAGAATGTTCTATTTTGAACAGAGTCCTGCATTGA-TAGT--GTAACCGCTGATTTC---TGTAACTGCAAGGTA-TCAGTGGTCTCTAGCTCTGTTCTCTG-ACGCATGTAGTTTTTGCCATTAGcattttctatattcattcactGTGTCTTTTACAGGTCAAAGTACCCTGTAAAATAACATTTTGGGCAAAAGTTTCaaaaaagcaaagattttaaTCTATAGACTAGCACTGTATGTGCTCCTTAAAGTGGAGAATTCTTTTACACGCACaatgataaagaaataataattctttaaaaGTCAGCATAA--TGTTTGCACATTGGCCT

a score=38242
s chr3           154631884 2411 + 160039680 CTCAGTCCCCTCTGTTCAT----TCCTTTAGAATACGTTGGTCTAATGTCTC--TCAGGAC--ACACCTAGGCTTACCTAGGCTGGTCACCAGAAT-AACTTAATTATCTAGAATCACCATCCTCTGTACAGCAGCCATTCACTGAAACATAACCCCAAATGAAACCTATAAGCTGCCT-CAACTTCCACC--TTCCCACAGTTCATCCCACTTGCACACGCTATT-CCAGTAGCAGGATCCGACAGACTTCCCTTCCAACTTACCCTTCTTTCTTAGGGTGTCCCCTC------------TCATGACAGGT-TTCTCCATTTGTCACCATTTCTCCACATAAGCCTGGAAGTTCATCG-TTAGTCAGCGTCATGATTATCTGTGCATATCTCTGCTGTCGTATCCAGAAGATGAACAGGACATTTCTTCTGTCAGGAAGATAGGCAGGAGGTGTGCATAGCCAGCCACCAGCCTCCACCCAAACC-TAGGTGGAAGCAAATGGTTGTTACCGGTCAGA-GATAGACCTGGTGGACTCCAGTGGGATAAGCAGTTTGTTGACTGGGAGGAATAGATATCCCCCTTCCTCATTTGCATTATTTTTATGCA------TATGGCCCTGAGGGTTAGACCCAGGGACCACACAGGATGGGCACGTA-GCCCTAAAGGGCTATGCTGC--TCTGATCCCCTG---TTTTTGTGCTGG----------AACCCAGTATGATGGATATGAACTAGA-------------AGATCAGGCA---GAAGGGTGGGTTATGGGTAAAAGATTATGTAGACTGGGGGCAATTTCCTGCTTGTAACAGCTTTCTGACTCCATTCAAGGAGACATGAAAACTGTAGCATCAG-GCTTATAAAGAAACTATTATATTAAAATGCAGTCATTAAGCAAACAATAAATAGAATTCCAATCACATCACAGAAGGCCTGGCAGCTATGGATGTACACAGATTTGCATATGCATTGTAAAGTATGTGTAAAGTTTGGTG------CATGGGTGAAGAAGTTGGCTTACTGTAGTATCTAAACACAGTTCTGGGTACTTACTGTTTTCCTTCAGGGAAAACCCCATTTTTAACAGTTCAAAGACACACAAAAATGGATTTAAATAACTATAGTAAAACAGTTCATTGCAACAGATTTTT-CATTTACTGTTTTGTTTGGATGAGGCA-GAATCTACTTATCATAACCTGATTCAGTTTTGGTTTTTTTAACTTTAC-ATTTTTAATGATCTAATTCAAACTTATATTCTAAATGCTGGAATTACATGAGACAGGTCAGCAATCATTTTAAAAATGTCAATTCAGCTTAGTAGAGAAAA-GCAATTGATGTGCTTTGGTGACGACTTC-ACTTGTTTTCGCTCGCTGCATTAGAGCTTGCAATTCTACTTAATTGGCATGTAATTTAATTGCCACATAAGTTATTTAATTATGCGCCATAAATGGGAAGTGCTGTTTGCAGG----CATATCTCTTTGTTGAACTTTGGGATGCCAGCTCTTCCTCCAGTCTCCTGCTCATCTCTGACCCATTTCCCTTGGTCATCTG--TTGGCTGCTGGCTTCCATGGCACACTAACTGATTTTGTCATTGTTTCTAACCAGGCATGCGAGTATATG---------CTTGTAT-----TTTCCATTATATTCTGCTAGCAAATATACAGCAACATGAAAATTAATGTTCATCAATAAGAATAAAGGCACCAAAGCC---TGCATTGTTTCTTAAATGAATTATA--ATCTTTTT-----GGCTTC------AGGTCAGCAGACTGTACAGGCCA-CTCTTTCTAAATTCTAGCTTATTCCCTTGGAAGGTTTGTCATGAG----GCTTCCACCGGGAA-GCTTCCCTCGGTTCACCGAGGCTTAGG----------TTTCCTCTCTTTAAATACCAAAATAA--CAGGGTCAGA-GGAAGTGGTATAGTCTCCCCTTC---------CTAGGAGGAGTGATTATGGGCC------------------------TTGTGTTACTCAGT--TACATCTGGTATAGTAAGCACTCGCTTGCTCGGTTGTTAGGGAAAACACACTGGCTAAGGC---TTATGACTCTACATCAT-CTTGGCAC--ATAAAATAATTTAAAAAGAACAACTTTAGTTGTCTCTTATAAATATTCTGTAAATAAAGATTAAATGAGTGGGTGGGTTCTGGTTGTCTGTGGACATGCCTGACCCCACTGTTCTGTTTGGTTCTGTTAGGGATTTGTCTGGAGAATTTTGTCTCATATAAGGAAGAGACTAGTGCCTGCCACAAAGAGAATGGTTTGGTAGGCTGGGACAACCTCTAGCATCCCAATCCGACTAACACTTTCCATA--------AAATAGACattaattgtttgacaaacatttgtcaagcacctaccctgaccca-gcgctatcctgtggctg----attaacagatgtcagtcccatgttcacagcgtctgcagctcagtggagagacggGAATACAGG-----GAAGG--------------CTTTAATGCTG-------AGACGATACAGAAAGACACGGCAGAGGAAG
s HiC_scaffold_1 141636548 2476 + 233722169 CTTGATCACTTCTATTTATGAGACCCCTTATTACGCCTCGGGCCGGTGGCTTAACCAGCTCTAACATCTCACCAAGCCTGAGGTGGTCACTAGAATTCCCTTGATTACGTTGAATCACCATCTT-TCTACAAAAGCTTCTCACTGAAACCTTATCCTGGACGAATCCCGTATTCTACTTGCAACTTCCACTATTTCTGCTATTTTACTTCACATATGCAAATCCTTATCAGTAATAAAAT-----AGCTTTCTCCTCCAGTTCATCCTTCTAATTTAGCATTTCCCTGCCTCTTTCGCGGCTCATGACATTTACTCCCCATCTATCACCTGCTCTTTGCATTAA---GAGAATTGATCACTTGATTAGCTTTAGGATGATCTGCATGTATCTTTGTTGCAGTATCTAGAAGCCGAGTAAGATGTTTTTCCCTT---GAAGCTAAATGGAATGTGGGAGTAACTATTCATCCGATGTCAATCAAACCATACGTGAAAGCAAATTGCTCTAAAC---CACACAATAG---TAATGAAAAGGAATGTGACAAGCAGTT-ACTAATCAGGAGACGTGAATACTTTTGTCTTTCAATT---TAACTTTCACGCACCCATGTCTTGTGCTGGAGGCTGAACCC-TGGACCTCACACACGGCACATGTATGCTCTACAC--CTCAGGTGCATTCCCAACCCTTAGTATTTTTGCTCTGGTGCTTAAAACAACTTAGTATAAGGGCTAAGAAGTAGAGTGTTGCTAGTAGAAACCAGACACTCAAAGAGTG----------AAAAGATTATGATGATAGCTTAGATTTTCCTATTTCC--CAAATTCCCAATT-------------------AATTTTAGCGTGTGTGCCTATATAGATA------------AATGTGCACACTtaact---------tgaaatttaaatttcctcACCGAACACATAG-AGCTATG----CACATGGGTTTATACCTTAACAATAGAATA-----GACATTTGATAGTGGATCAAGTATGAAAAATTGAGCTTTATGTGTTACCAAATGTTACCTTTGGGTATCTGCTATTTTGCTTCCAACAAAAC------TTCAATGCctaaaagaaa----gaagtgaaatttaaaaaaaatgg-aaaccaatTCATTAcaacatttatttacatttattattttgtttggttgaaACAAGAATGTACTTTTCTTAACCTTATGCA--------TTTTTTACCTTCAAGACTTTCAGCAGCCAAATTCAAATTTACATTCTAAATACT--AATAACAT---ATGTAtcagtattaatttttaaaatgccaattcAACTCCacggaaaaaaagaaattgatgtgCTTCAGTAATAACTTCCACTTGTTTTAACTTGTTACATTACAGCTTGCAATTCTATTTAATTGGCGTGTAATTTAATTGCCACGTAAGTTATTTAATTATATACTATAAATGGAAAATGTTGTTTATAGGCAATCACATCTCTTTGTTAGAATTTGGAGTGCTAGATCTTCCT-CAGTCTTGTGTTTACATGTAAATGCTTCAAGCTGCTCATTTACTTTACATGTTGGGTCAGAACACATACTGACTGATTCTGTCGTTGTttgta---aggtgtgtgtgtgtgtgtggtgtgcacatgcatatgtatttttgctatattttagTAATGAATTG--AGAAAGCCAAGTTTTAATCTGCTTAATAAAAGATGAAGACACAAAAGTTCAGTGcgttattt-ttatagaaatgatcCTATCACTTCACACAGGCCACTAGCTGAGGCCAGTGGACCTTGCCCTCTATCTTTTGACTAATTCCCCCATATTCCTCTTGAAATTTTACCTTAAGTGTTACTTCCACTAGGAAGGCTTTTCTGACCCTATGAACGAATaggtgactttttcttttttttccccctgtaacAAAAGAAGGCAGAGTCAGACAGAACTAGAatatcatctttatctttcttaatttAGGTAATGTAATGTAGGGCTCCAACAGTTTAACTTTGGAGAGAGTCAGGTTTCTTGGTTGTAAATCAGAGATAAT----ACATAGTTATTCCATGTTTACTAAAAATGTATTAAACAAACCTTATTATGACTTTCAACCATGCTTTgtatggagaaaatatttgaaaaa-------ttttgcttcattttattaagTATTAGTAGAGAAGAGTTGATTGAGCAAATGGATTATGGTTATCTATTGACTTGCCTAGCTCC-TTGTCCTGTTTATGTC------GCATGGGCCTATGGATCACTATTTCCTGAAAGGGAGAGAATAATACCTGTGACATAGTAAGTGATT------------ATTAAATCTAGCTTTCtaacataagcaaaatttttcataACTACTTCAAATAAATATTACTCATCTAACAAGTGTTTCTTAAACACCTgttctgagccaggcatggttcTGCAGGTGGGCTATAAATCTGTGCTAGTTTCTGTTGCATAAAATTTTTGTGTCAATGGAAAGAC-TGATTACAAGCACACAAAGGTACGTTCGTGTCAACTTAAGTGGTGGTGATAAGAACTACACAGGAAGatgtggaagaggaag

a score=20760
s chr3           154646711 1171 + 160039680 GACTCTTGAATGTAAGGATGAGGAGTGGCCACTCTCAAGTATTTCGGTGCCATTTCAGGGTCTGAATCAAACCAGATATTCAT---GAAAGACAGGTTTAAAGGA---------------GGGTGACATGGTCTGG----TGTAGCTTTTGTGGCTTGCTAACaaaaaaaaaaaaaaaaaaaaaaaTCTTTATTTATTACCAGCAGGTGGCGCACTAGCCTCACGTTTTAAA---------------TCTCCCCAGCTTTGTGATTTTTGTTGTAACTCACTAATTGGGCTGTTAAGGGA-GGAGATGATAATTTAGGCACTGTTTACAGAAGAAAGCTGATTTAACCTTCAGCTTTTCTATAAGCGTTTTCTTTTTT--CGATCGCAGCGTTCCAACCGAAATTTGCTAAAGTAAAATGGAAGACCTCA-ACTTTAAAAAATGATTGGAGTGAAATGAAAATATAAGCTAGGGCATCAAGTTAGGAACA-GGGGCGAAATGTGAGTCGTGAAATCAACACTTCGGGACGGTAATGGCACCATAGCAGCTACAGCCACACACCACACAAGCAGCTCCTCG--------CAAGCAAAACGCAGACCCCCGTTTGTGACTGAGCTGGAACACTGAGGGGATAAGCAAGGCTCTGA--ACGCAGTGCGCCTTCTTTGCCAGC-TGGCGCAAGTTCCGAAAACTAGAACCCGG-GCAAAAAACGTTCCACCACACATCACTGTGAACGCGACCCG-GTGACACTTTCACAAACTGAGAACCAGTGAAGACAGAGAAGCAAGTAAAAAAGGAGTGGCCTGGGTTGACAGATAGTCTTTG-ATGCATG-AGATATGGGTGGGGGGGGGGATAATTCTC----GAGGAGAGAAAGTGATGGGGCTCAC-------AGTCCCCGCAGCTCAGGGAAGTGAAGCAGAAGTTG--TCCTGACAGCTAACGGTGCAGGGCATGCCTGCCTGCGGGCGCTGCCTG---TGTGGCCAGGGCTGGATGTGCT---CTGCTCGAAGTTTGT--------CTACATTTGAACATGAGTCCTTCAGCAAAGGGTATCATGA---------GAGACAGCGCCTTTAAGCCAGCTT--TGTTCTTAAA-ATACTTCATTAGCATGAGATAATATTAGACATAGCAACACAGATAAAAACAGA--TTACGCAAAGAATAGCAATACTTATTTGGGGAAAACACC-CAACGGGAGTTTCATGTGTCACAGTGAACTGTGGGCACATTCAAA
s HiC_scaffold_1 141643596 1194 + 233722169 GACTATGGAATGTAAGGATGAT-ATCTTCCACTACCCATTATTTC---------TCAGGCTCTGAAATACGGCAGGTAGTGGTTGCAAAAGATGGGTTTGAAAGAATGAAATCTTTTCAAGAGAGCTATtgtctgaaatttgtttttgCTGTGGTC------------------GATGAAATGCAGTCTGA---TACTTCCAGCAGGTGTCGCACTAGCTCTatctttttatcttgctttttttttttttttttggcttt-tcagCTTTGCTGTAACATATTAATTGGGCTGTTATGGGAAGGAGATGATAATTTAGGCACTGTTTACAGAATAAAGCTGATTTAACCTTCAGTTTTTctatgaacagttttttttttcccaaatgcaGCATTCCAACTGAAA-TTGCCAAAGTAAAA-GGAAGACTTCAcatttgaaaaaatgattaaagtgaaataaaaattcaagatagTACAGCAAGTTAGGAATGCAGGAAAAAATGTAGAGCACAAATTCAACGCCTCTAAGTAGGAAT-ACACAATAATAGCTGCAGCCACAC--------AACTGCTTCTCTCTACTTCCCAGAAACAATGCACACTGCATTTGGTATTTGAACCAGACCACGCAATAGAAAAGCAAGGCCCAGAATATGAAATATGCCTTACTTAAAAGAGTGTCTTAAACTTTG--ACTTATAATCCAGTATAGAGAACTTTTAAT--CATAGCCTTTTGAACATTAGGTGTGTAACACTTTTGCAAAATGAGAACCA--AAAAATAGAGACACAAACAAGAAAGGAGAA---------TGTAATTAATCATCGAAAGTATGAAGATA-----GAAAGTAACAATAATTCTTTGAATAATATAGGTAGGGCTTGGGTATATGTTATTGAATACTGGCAGCTcaggatagaaaaagaaaaagggaatccTGGTATC-----------AGAATCCCTAGTTATAGGCTCTCAATACACTAGACCTAAGGTTATATGTACCTAACCACTAGGACTACGTATTCCAAATTACTCTGAAATTTTCCCCCATCTGCAAAGGGTATTGTAAAGATCAAATAAGTTAATGTGTGCAAAAGTACTTCATGTTCTTCAGTCTGCGATATTAGCATAAATTAGTAGCAAAGGTGTCAACCTAAATGAAAACAGAGTTTCTCCAAAGAATACTGAC-TTTTTTTGGAAATTGCATTGCCATAGGAATGT-ACAGGTCATGGTAAACTATGGGCACCTTCAAA

a score=45791
s chr3           154648724 1689 + 160039680 CCACAGATTCCCAGTGAAAAGATCCTCTTGAAGACGTTCAGTGATGTTTCATCAGATGAAA--------CACCTCTT--AGGCCTTT-CAGGTACAGGCAAATGAGG---CCCATCT--------------------ACTGCAGGGTCACTCCAGATTTGGAAGACAGC----------------------CTTGCCTTGAGTAAACCTGGTAAATATTCACTGAGAAAATTGAAATTAAAGTGTGTACTGTGCACCAGCAGTGGTCTGTAAT-CTAAGGTTAT----TTCAATATATGCACAGACTTGTAAGTTTTACTGTGTCTTTCAGTTTCTATTTAAGGAATAAGTGGACTTAGGCTGCGGATGTGTGTGGTGCTGCAGGCACACCTTTTGGCCGGCACGGGCTTTGAGAGAGCTGTTAATTCCAGTGAACT---TCTTGCTGGCTG-GGTAAAAAAAAAAAAAACAAAAAAACGGGGAAATAAAATAGGCCCAA---TTTTATTTAGTTTACACTGATAGACGTGAATCTAGCAAGAGTCCACACCATTGAATCCTTCTTAACGTTTCCTTCCATTCAGACTTAGGGTTTTGTATGGGTTATATGTGAAGTATTTGCTAATAAAAGAAGCCAAACAGTGTAGGAAATTAAGCTTTGCAACCCCTCC--CCTGCACTGTTCAAGCTGGGATCCGAATGCAAACACTGAGGGGATATTAGAAATCCATGCAAGGAACTGTGGCTTTTAGAGATTGTCTTCCTGTGCTTCTACGAGCATTCATTATTTCCTTGGCTGTTGAACTGACTCTATATTCAGCTACTAAACAC--------------------------GCTGGTCAAACGTCCTGCTCACGGCTGACAAGTAGCTCCGTTTCCTGACAACATGACCAGCACTGTTGTTTGATGTTCCGTCCGGAGCAGAATTAATTTTCTCCCAGGAGGTCCCGACGGTGAGATAGATCGCACATGCACAGGGTCCACCGGATGGTGGGGCCGCCTTGCACATTGGCATTTTATCTGTAATCAGATACTTTATCGACACGGATCCTG----TCAATTCCCCCCAAATAAGTTGGCTTTATTAATACAGGTTGCTCTTCCTT-TTGCAGTAATGAGCTCCACCATGGCCGGCTGCTCAAAGAACCAGGAAAAAGCAAAGCCCGGGATCTGTCATTA------------CACAGGGCAGGGGAATCGGATGCGGCTTTTAACTCCAGGCCACTGATGCTAATTCTTGGTAGCTTGCCTGACTTGCCTGGAGCAACTGAAAACATCAACTTAGCTTTATTCAGGCTAATTATCAGCCTGTGCAGTGGTCCTAAATTTGAGAAATGATTGACAGCCTGATACATATTCTCA---------------AGTTCACACTCATTAGCACACAGTGTCTCAGGTCTGGTCTGCCCCCAAGACATGTATGGAAGCCGGCAACCCACTGAGCTCAGACAGTGCTGGGAAGAAGGACT-------CATCCCTTAGGTGTCCTGGGCTCTCTTC-CCACACTGTCCGCATCTGCATAGAACAAG--------------GGCTGGGTGTGACCTGGTTTGACCTGCATCTGTGCACAGAGGCAGCTTAGTCTAGACACTGTCTGTTCTGAATCAGCAGTCACTTTATCACAGGGCTGGGTCTCTTTGTTGATGAATTCCTTTGAATAACCAAGTG-TGTTGAACATTTGTTACATTAAAaaaaaacaaaaaacaaaaaacaaaaCTATGTGTGAGGGTTGCCCATCATCGTCCTTCCCATCTTAGAAAGCC-TGACACTTGCTCT
s HiC_scaffold_1 141645596 1794 + 233722169 CCAAAAATTCCTGGTGACAATTTTCTTTTCAAGATGTAAAATAATTTCTCATCAGACCAAGGTTATCTGTACCTTTTGTAGACCTTTTCAAGTG-ATGCAA-tgagaatttctatttttcattcaaaGGTTTCTTTGATTACAAGGCAAAACCAACTGTGGAAGATAACATTCTAAGACAAAAATACTAACCTTAACCTGGATAaactcagtaaatgtttattgaatgaagTAAGATTGGGCCCTGTTCCAGGAAATACTATAAACCTCTATTTCTAAGGTTATAGATCTCAATATATGCACAGAATTAGAAATTATTTCACAATCTGTTATTTCTATTCAAGAAATAGTTGGAT-----CAGCAAA-ATATATTGTCATGTATGCATGTGTTTTGAGGTGCATTGGAGTCAAGATTCTTGTTG----TAATGAACACAATTTGGTTAACAACAATAATGAACAATAAAATAGTGAAACAGAGAAATGAAA----CTCGAGAGTTTTATTTGGTTTCTATTTCAGAAAGTAAACCTACCAGCATTGCATACCCTTAATTCTTTCCTAACATTTTTTATCAT-----CTTTGACTTTTCTGTAGATTATACTTGAAGTATTTGCTGCTAAAAGGAACCAAATAGTGCAGGAAATTAAACTTTTCATCCCCTTAAATTTGCAGACATTTAGTT---ATC---ATACAAATGCTGTCAGAATATCAGCAATCTATGCAATGGATTATGACTTCTATAGGTTTTCTTG-TGCATTTCTGCAAAGCTTCATTATTTCCCAGGCTGTTGAACTGACACTATATCcagttgggaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaagccagTCAAATTCTGTATCAGTTGCTGATTAGTAGCCCTATTCCTTGACAAGGTTACCA-CACTTCCCTTTGATGTTTCATCCAGTGTGGAATTAGTGTTGTTCCAGGAGGTAATGGAAATGAACTGAGTCCCACATCAACCAAACAGGCTGGACAGCAGAGCAGCCTCGCAC-TTTGCTCTTTATGAGTAATCAGACGCTTCATCACCACAAATCCTGCCTGTCAAGTTCCCCCAGATAAGCTGGATTTATTAATACAGGTCGTTACTCCTTGTTCCAATAATGAGCTCCACCACTGGTGGTTGCTCAAAGAATCACAGAGAAGCGAAGCAGCAGAATTGTCATTAGAGAGCACACTTCACAGGCAGTGGGAGTGGGATACAGCTTTTGACTCTGCACCATTGATGGTAATTTTTGGTTGCTCGGCTGATTTGCCTGGGGCAACTAAAAACATCACCTGAGTTTTATTCAGGCTAATTGCCAGCCTGTGCAGTGGTCCCAAATTTCAGACATGATTGACAACCAGACATGTATCCTCAGGTGCGCAAACTTCTGGTTCATGGTCATTAGCATGCAGTTACTCTGG-CTGAGTTGCCTCAGAGATGTTCACAGAGGCCCGAAATCTGCTGAGTCCAAACAGCTCTGGGCAGGAGCAGTGGCACACTGTCTCCCAGGGGTTCACAGCTTTCGCAGCTGCACTGATGATCCACGCATAGAGAAAGCTGGACAGTGTGGAGACCACGGGCGACCTTGTTTGACGCCCGTTAGTGTG-GGAGGTGGCTCAGGCTGGACACCATCTGTCCTGCCTTGGCCACTGTATCATCCTGTGACTGTCATTCCACATGGGTGGATTTTTTTGCATAGCTGAGTGCTATCATTCATTagctaagttaaaaaaaagttata---------------taaatccTGGTGCTGCTTATCACATTTCTGTTCACTTTAGAAACTTGTAACACTGTCTCT

a score=13646
s chr3           154650856 909 + 160039680 CCATTATTTTGTGCCTGTCATTGTTTTGGGGCTTCTAATGCTTTGTTGTACAACTAAACCTGTGATAAAATTAAAATCCCCATAAACGAGCTGCCAGGAGGTGCATCTGAGAACACGGTTG--ATGTCA-CAGGTGTGCCAAATG--------TTACATCTTTGTCAGGAAAATAGACTTGAAATTGTATAGCAGG-GTGACTTTTCCT------------------------GGGGCGGAGGAAAGCTGCAATTCGTAGGTCT----CTGCTCCTTCCCAAGAATGGATTTCC---TGCTTCCGGATCC-CAAGAGACTCCTTGTACCCGCTAG----GGAAAGCGTCCTCACCACAGAGGCTCCTGTTGCCCAAGGAGTGCTTCACCCAGCCTTGGCTTTTCAGTGGAGAGAGGGCCACAGCACCATCTCTGCAGTGCTTAGGACCTGATCCTGCCGTTTCCTCAGAGCACTGCAGGAAAGAA------TGTCACTGTGGTCTAACTTCCCACACTCTTAGCAGAGCCTCTCT-GTCTACTT-----TTCTTCATCTTCCATCACCCAACACCGGCCTCCCGTTCTC---CATGGAGACATGGCGGAA-GCTTGAGCTTCACCCACCCCTTTCCCGTCCGCAG------------TCAGAACAGCAGAGTTCTGTCACGTGGTTTTGCTAGTTGGAGGCAGCAGACAAAATTCTGACCAGGGATATTTTTTGTTTGCCCTGTATAGTG--TTGtaaaaattagaatgtttcacccaaaccatctggattttcagcttctttgtaaaaaggagaagatgtgTTAGTCTTAGAAGGTATTTCTAGAAGACTGTCAGCAGCTG----AAGTGCAGCCAACTTTGAT---GGCTGTGTGGGAAGAC-ATCGCCCTCCAGCACCTTCTGCTTTT---CCAGCTTTGGCATTTGACTTCTTGCTTGATACTGTAAAGAAGAAGAAAAGCTTTCCAGATCAGA
s HiC_scaffold_1 141647528 939 + 233722169 CCATTATTAACTTTTTCCCCCCACTTTGGTGCTTCTAGTGCTTTGTTGAGTAATTAAACTTGTATTAAAATCATAATCCCTATAAACAAGCTGTCAGCAGTTACATCTAAAAACGCGATTGACATACCATCAGATGTGGTATGTACTGAAGCCTTATAACTTTTTCAGGGAAAGGCACTTGAAATCGCATAGTAAATAAGACCCTTTTTTTcacagtctgaaaaaaaaaaaaaaaaacaaacaaaaaaaacaagctaAGGATTTAAAACTGC-----CACAA-----GGTTTCCTGGTGCTACTCTATCCTTGCTACACTCCTGGGACCCTTCAGACCTGGGAGGTTCCCTTG--AGGGGAAAACTTGTTGCC-------TGCACATCAGGGCTTTGTTGCCTCA----------GGATGCAGCAGCCTCCC--AAAAGCTTCA----------------TTCCAGAGAGGATCTCAGGGAAGAGATCCTCTAGCACGATGATGCAGCCTTCC---------TCAGATCTTCCCTAGGTTACTTCCCGCTTGCCTGTCTTTGGTTGCTAAGAGATATATATCTGTTCcctcacagagagacagagatgaatgCTCAGgcttcctgccctccctacccTTCTCTGAGGGCCAGGCTTTCCAGATTAGCAGAGTCCAAACCTGTAGTTATA--AACTGGAAGCCACTGGGGATGTTCTGATCAGAGGTACAATTTGTTCGCCTTgaatagtgttttttaaaaattag-acatttCACTCAAAACATCTGCCTTTTTGGCTTTGttggaaaaatcagaagatacGTTAATTCTAGAAGACATTTCTAGATGGCAGCAAATATCTGAGCCAGAAAAAGCTGAGTGTAAGACAGGCTGTGCCGTGGGACTGCCACTCCTTagggttttgtgtttttctcccacatttgttttttgatttctgGCTTAAAAGAATAACAAAGAGCAAAAACATTTCAGATCAGA

a score=27931
s chr3           154652795 1203 + 160039680 CTGGGGGTGATGGGCC-ATGGTTACACAGTCACCGTGTCACTGAACGACTCTACACATAGTTCCCAAGATGGCTGAAACAAACATCTGTTTACCATGTGAACCGATATTTACTCAGATACCTTGATATCTCATATGTGAGAATCC-TTTTCTGAGGCTCGATTAGAAGCAACTTGCTTCCTAGGCAGCCACCACTGGCTGAACGTGCAGTGCCCTGGCTAGTATCTCACGCTGTCTTCTAGGTTGGTCAGCCATTAACCCTTTCAAGCCCCGTCTATTTCAAGCGTACCCCGAA---CATAACATCCCCGCAGAGGAACCAAGAATTAGCTGAGATGCC-TGTTAGGACACAGGAGGCGTTAGGTTTAGGTTTGCCGTCTCAGCTGCCACCC-----TGGTCCTAAGTTGTTCCTCCCTAACCACCCTGCAGGGGGCAGTGTAACACCGGGGCTGACGGCCA--ACCAAGGCGGGggtcctgacttagctgtgtgtgtgacttcaggcaaagtgcttcaattccctgcttctcagaatcattctctgtaaaaaagctgaaaatgatagtatttgagtttaagatgagacctgacatttaaagcgtttggcacagagcctggcCCTCGTTGTGCAC-CAGCATTGTTTTTTCGG--GTCATTACTACCATCCTTCATAGGGCCACGGAGGTAGAATTTATTAGCTTCGATGATGAGGCCCATGTCTGTCCCCCCAGAAATCTGGACA----GTCTCTTTGAAACACTCCTTGCCACTGTCCTTGTTCTTTTTGGTGAT---TGAAG-GCCTTCAGTTTAGTCGGCCTGAGAATAAAGAGTGGCTCTTCAGCAGGGGAGGCAGAGCGGGAGGCAGAGGA---GGGATAGGAGGAGGGATAGCCACAGAATTCCACCCGACTCTGGATCTTTTTAACCCACAGTCTCCTGCTGATTCCTTTGAGATGGGTCCTCCCCCAAATTCTAGGTATCTGGTCACCATCCTCCAAAATAACTGGATGGCTTTGATCCTGTCCTCTCTATTCTAACCATCAGCTTTCCCTTTAACCAGTTGATTGGAGA-GGGGTGGCTCAAATCACAGGAGGCTCGGAGTCTCTCTCCTGATGGTCTCTGTA---ACACTGGCCTGGTTATCCCATCACTCGGGCATCTGTGCCTCCTCCT-GCAGTCTCTGGATTCCTTCTGGGTTGTCAAAAGTGAACTATAAAAGATCAGG
s HiC_scaffold_1 141649787 1172 + 233722169 CTGGGAGTTAAAGTCTGATGTTTTTCCAGTTTGCATATcacaaaagtattttatattgGGTTTCTAAG-CAACTAAAACATCTAGGTCTTTCTCAAATGAACTGAAACTTGGCCAGACATCTTGATATTTTATATGGGTAAATATATTTTTGGATGCTGATTTAGAAGCAACTTGCTACAGGGGTAGCAAC-----ACCAGATTTAGAACGCCTTGGTGGGCATCTCTGCTTATCTACTGACTCGGTCAACCATTAATCTCTTTGGGCCTAGCTTTTCTTATCTATATCATGAAGATAATAATACCTTCCCCCAGGAATCAAGAATTAAGTGAAATATTGTGTGTGGGTAGATAAGTACT--GATTCCCTCCTATTTTTTTGGAGGACACTCACAATTTGTCAT---TTGCTCAACCCCAACTTCCCTGCAGGGGACAGTGTGACACAGAGGCTGAGAGCCATTGCTAAGGAGGGGTTACC-ACTTA--CAGGTGTGTGACTTCAGGAAAATTGCTTTAATTCCCTGCTTCTCAGAACCTTTTCCTGTAAAAAGG-TGGAAATAATAGTATTTGAGTGTACGATAAGACATGACATTTAAAACAGCTGGCACGCAGCTTGGCACACAGCATGGATTCGgcgatttttttttaattgtcattaCTACTGTTCTGGGTACTGTGACTAGATTAGAGTTTATTCGTTTTGATGACAAGGCCCACAGCTGTCCTTC-ACAAACCCAGACACAGCATCTCTTTGAACTGCACTTAACCGT----CTTGTTCT----GGTGATCAGTGAGGAGCCCTTAGTGTACTCAGC----AAATAAATAGCTCGTTTCcagcagagggag--gagagggagggaaaggacaCTGAACACCAGGTCAGTGAACAGTTTCATTCTTTCCTA---TGCATTTTCTT----CACAGTTTCTTGCCAGTTCTTCGGAGATATGTCCTCCTCCAAATTCTAGGTGTCTTGTCTACGTCCTCCTAAATAACTAGGTTACTCTGATGCTGTTACTCCCAGTTCA-----------CCCTTTTATCCAGTGGACTCCCGACAGGAAGGCTT-------------CTCTGAATTGCCTCCTCTGTGGTCTCTCTGCTCACCCTGCCTTAGTCATCATCTCCTCTAAGTCACCATGCTTGTTTCTCGCTGTTTTGGAGTACCTCTTGGGACTCTAGGGATGAAC--TGAATTATCAGG

a score=9062
s chr3           154655454 693 + 160039680 GATTTTACTACTGTCACCC--TGGGT--TTCCTGTAGCACTCAGGTACCGGAGAGTTGTCCTCAGTTCTTGATGTCTCttaaaagccccactgtttggccatatttggagttggtggaaaccttaagatgtggggcctggt-agtcaccttggggtgactcagaccttgcccag--------------gtctttcctttctcttctcaactctttcaggtcatgccatggagggagaagttttgtcccaccatacactcctgacc--------------------------atgacatgtgatttaccTGCCCATGCCCAGATCCAGAACAAG-----TCCAGGGCAAGCATCTTCTCCCCACA------CATCTCAG-CGCTTGTTTCAGTGAAAAGAAGCTCAGAGGCAGGCTTGCTGTCGTCACTTACCAGTCCAGAACTCTGTTTTCCCCTTTGCAGTTTCTTTGAGGCCTGTTTCACAACATCCCTTGA---CTCATCTTTTATCA---CAAGAGAATAT--TAACTGAGACTTTGTGATCTCTCCAATAACAACAACGCTTTTGTTAA-------TCTTCATGCCCTAAGGGTGACAGCGTTAGCCGAGCAATTTCTAGGGGAAACATGCTTCTTGGGAGAATATTTAAGTTC-ATGAAAAACAACTTAAACTCTTTTAGGGTTGCTTTTTCATATGAG----------ATAATGTAATAAATTCCAAGCCACGTTATCACTCAATATGTATTCCTCAAGGACCTTACAA
s HiC_scaffold_1 141653532 739 + 233722169 GGTTTTACTGCAGTTGACCAGTGGGTAATCTCAGTA-TAGTTTGGTTCTGGAA---TGTCCTCAGAT-TCAGTGTC--------------CAGCTTGGTTGTATCTGGAGGTGACGGAA-CTGTAAGAGGTCAGGCCTAATTAGGAGTCTTTAGATTATTGGGAAAAGTCCCAGAAGGGCATAGAGAAGCTcaccccttctcttcct--tcctttcactgCCAGCCACAGGATGAATACTTTTCTCA-GCCACGTGCTCCCCACCTAGTGTGCTGCCTTACCCCAGGCCAAAAAGCAAGGGACCTAC-TGATCATGGACTGACTTACAaaatgatgatttaaaaataaacattttgctttgaaagcttactatttcaggtatttctttTATTGACATGAGATT----GGCTAATGCAATCTCTTTAACTCCGAGTCAACAATTTTATCTTCCCCTTGGTGTTTTCTTTGATTCCTATTCTGCAAAGTCTATTGGATTCCTATCTTTTATTATAACAAGAAACTCTCATAATTCAGATTTTGTGTTCACTTCAAtattgacacttttttttttaaaaaaaagcttttatgCTACCAGGATGGCAATACTGGCTAAATAATTACTAGTGAAAGCATGCTCGTTGGGAGAATATTTAAGCCCTATGAGAAA-GCTGTAAACCCCATTAGAGGTGCTTATTTACATAAATCTCAGCTTCTCAatactaaaaat--------gtattttcatctaATCAGTATTTCTCAAGGTTCCTATAA

a score=27952
s chr3           154660134 941 + 160039680 aattcttgtttgatggctgaacaaaaacaatcagacactgggcggaacttagctagcaagccccagatggccagtctc---CTAGGATGGCCTCTAA--GATTGGATGGGTGAGCCCATCACTGA------------TTGTAGAGA----CCACGCAGCA------------------CTGTCCTGTGCTCCTGCCTCATGACAGCTCCCTCAGCGTTTGACCCTCA-CTCCCAGCCCACAGATCTTTCTACAAAGCAGAAATATCCGTAT----GTTCTCTGATGTTACTGGGCACATCTGGGGGCTTGTTTTCTCAAAAGAAACTG-AGATGACTCTAGTGACTATTTGGTCTTGAAATCGTTTAATTTAGTTTTTTTTCC----------CCTTCCCTTCATTCCCTTACCCTTTCTCCATAACAGAAATTAACATAAAAAATTCCTTCTGGCTAAATTCCCAATGCATTTTCACAGTGAGCATTTTCTGAAGTGAAAATTAGGGGCTTCCTCGCAGTTTTCATCAGGGATGTGAAATGGTGTAGCTCACGGGGGTGGAGAACTCAAG-CCCGTTTATGAATTAATGCGTGCTGGTAAGGGGGCCTGTCTC----TAGCCTGCCAGAGGACCCTTTTCTACAAACTCC--AGCATACCATCAACGAGTTTTATTTTCCCTTTTCATTCCATCACTGAGACAGTGTCATTTGGTATTTG----AAGAAATTAATTGGCGC---CCATGGAGGGCTGCACTGCCTGT-----GCTGTCCCTAGGAATGCTGGA--------ACCTCGGGTGCACTGTAGGGTCTACCTCTACTCCCTCCACCTCTCCATCTCCAGCCTCCCACCCCTCCA--TCTTTTCTAGCTG-AATCTAATGATAAGGAACAGTAC-TGCATCCTCATAAAGACTCGGAAGTCCAGTGCAGCAG-GAAAACACTTCTGGGAAAGGAGCAGCCTTCTGCCCATCTCTAG--------ATCTGGTTCCCAAGGCAACCTTGAATTCTTCAGTCT
s HiC_scaffold_1 141659085 986 + 233722169 AATTCTTGCTTGCAGGCTGTA-----ATAAACAGGCACTGGGCTGCACTGAGTGAG--AACCATAGGTTACCCATCCTGATCTAAAACAATCTCTGATAGGTCAGATCCGTGGTTCCCTAGTGGAGCTCCAGTTCACCTCAAGAGGAAAGCCAACCAGCAGGTTAAATGTACTCctgcctttcctcctcttctgcttC---------TCTCCATCTTCTGACCCCCAGCTCCCACCTCAAAGGTCTTTCTACACAACAGAAAT---CGTTTTAGAAATTTATGACACAGCTGCAGACATCTGGGTGCTTATTTTCCTGAGAGAAAATGCAAATAACTCCGGTGACTATTTGGTCTTGAAAcagttgaatttattttattttactttattttttctttttctttattccctgCTCCTTTCTCCATACtagaaattaacataaaaa-ttccTTCTGGCTAAATTCCCAATGCATTTTCACAGTGAGCATTTTCAGAAGTGAAAATTAGTAGCTTCCTTGCAGTTTTCATCAGGGATGTGAAATTGTACAGCTCACAGGGGTGGAGAACTCAAACCCCATTTATGAATTAATACATGCTGCTGAGGGTACCTCACTCTCTGTAGAGTGCC-GGGGAATCATTTCTACAGAATCCTAAGTATCTAAATAgtgtatttgaattttctttctcattctacCAGTGAGAGAATACCAttttctatttggaaaaaaaaatgaattaatatgaaACAAGTAAGACTT--CTTTCTGTAAGAGGTGGTCTGGGAGACTGAGGGACTGAAAGCACCTGGAGAAAATTAT---Gtctctctctcatccttc--------------------cccttccctccaatTTTTATCCAGGTGAAATCCAATAATTGTGAACATTAAGGGCAACCTCAAATGGGACCCATGGTCCAATGTGGGAGAGGAAATACAT-GGGGAAAATAGT-GACTTCTGTC--TCTCTAGTTTCAGCCATCTGGTTCCCACAGCAGCTTTGAACCCTTCAGTCT

a score=78536
s chr3           154662992 5036 + 160039680 [encoded data, 5479 characters]
s HiC_scaffold_1 141660679 4969 + 233722169 [encoded data, 5479 characters]

a score=40797
s chr3           154672473 2167 + 160039680 aCCTCCCACCCCTCAGTGCCTGGTACCGACTGGGATATAAAATCGATCATTTGAAACTGGTGATCCATTTTTCTTTGACTGCTATTATTTTTCTGAAACAGTTATAAACATTTATAAATTAACAAAAATACTGGGGGAGGGGTCAAAATGCTGAAGGAAAAGAAGGAACAGCAGGGAGCTAAACCGGTAACATAAATTGCACAAAGCACGCATGGAACAGCCCTGCAAACTGTGGGTTTCCAACGGGATAGGATCACATTGTTTTATAGTTGCCATTAATTTGTCGTTCTCTCTGTGCGATGGGCTATGATACTCCTTATCTGTGGTGATTATGCGCCTTTTGTATCGCGCAGTTCCTTCTCTACATGGCTTGCTTCGAGATATTTACAGTAATATCATCTCTATTGTTTAGGATCCAATAAAAATAATCTGTGGTAAATTAGAAGAACAGATTTAGAAGGAACTTCAAATCGCTGGGTACGAGGGACACAAGTGGTTTTTAATTTTCCTTCCTCCACTCATCTGTATTTTGAAATTTTGTACACTTTGAGATGACAAGAACAAGGGAGAAAATCAACGCGTCTTTGAAACCCTCCCGTCAGTGATTACAGCGAGCATTTTGTTATATTATTTCCACTCCGTGTCCCTACCATTTACCTCTGTT------------TTGACAAAACTACACTATTTGAAAATCTGTTTCTCAACTG-ATTTAAAATTACACCAA-----------------------CATAGCATCTGAGTAGTCTTTCCATCTCCCATGTAAACTGCGAGCCCTTGTGATAAGAGGCCACATCTCTCTGTGTCTCTGGGG-TTCACCATATCGCTGCCACTGTGCTTTAAAATTAGCTCAGTGGTTGCTGGAAGACTTCCTGAACTTCTGGGACTAGAAGGTAACAGAAtgtgtgcgtgtgcgtgtgtgtgtgtgcgtgcgtgtgtgAtttattttggctcac----------agtttaatgctgtaggccaccatgagaaagaatcatgggtgctggaggaagaggcagctggtcacacagcatctgtggccaggaagcagagagctgtgaatgctggcgctcggctccgcccactttcccctttctgtgcagttcagcaccccagctcaccgtgctgccttatattttaaggcagggcttctcattcttaattaactgaattcccaaaccttcacaggcctgcccagagctttgtttccttggtgactctaagatcAACCATCACACAAACAGGCATTTA-TTATGTTCCAAGAGTATAGTCACGCATGCACTCAAATGCAGTTCCCTGAGCATC--TCCTGTGTGGTCG--TGCCACATTCAGGAATTGCTATGGCCTAGAGACTCTGTTTTCTGGAACCCATCTGAGATCATAAAAGGCCTGAATAACAAGTTTGGGGCATGATTTAA-AGCCAGTGGTCCTTGCTGAACCTTATTGTCCTTGGGCAGC-CAGAGATCCCGT--GTCAGGAATCGCTTTGGCTGCAAACAGGAGAAAGGAAATCAAGTGGAGACTCAGGCCACGACAAAAGCTATGATTTGTTTTATCTGCGGTATACATACAGGTGATTAAGGTTTTTATTACTGTCAAGACTTGGATTTGTTTCGTAA----------------------------------------GTCTTGATCTCTGCAAATTTCTTAATATTTTTCTGATAGCAAGATATAAAAATTAAATTCAGGCattatattttattttataaaaCCAGCACAAGTATGAAG-GGAAGTGATGGGCCAGGAACACATTCACAGGATATTTTC-----------AGCATTTTTT---------------TTTTTTTTGTGGTGTGTTTCATTAACCATAACTGCGTCTGTGGATATACTCAGATACAAGGAAAAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtTCTGACTCTACTGGGGAAGGTAGACACAGGAGGGAAGACTGGGAACGGTCTCTCCTAGACAGCT-CAATGTCTACCACAGAGCTATTGTTATTGGCTGGCTGAGATTGGACTTAGATGGTCTGAGTTCTGGACTGTCAACCTTGCCACATAGGAGTCATGTGACTCCAAGCAGATT-TGTGATTGCTCTGAGTCCTGT-----------CTCTGGGAGGTGTATGT---------TTCTTACAAGTGGTTGTGACCAATTGGGGTGATAGTACCTTTAGCACAGAGCCTGGCTCATATGAAATGTTAATAC-TTGGTG-CTTGGTTCTT
s HiC_scaffold_1 141667347 1983 + 233722169 ACTCCCCACTTCT-AGTGCCTGATGCTGATTGGGACATAAAAATGAACACTTTAAGCTGGTGATCCATTTTTCTGTGgctgttattatttttctataatagtcataaacatttgtaaattaatgaaaattctTAAGG------CAAAATATTGAAGGAAGTGAACAAACAGCAGGGAACTAAACAGATAATATAAATTGCACATAGTAGTTATGAAACAGCATTAAAAACTAAAGATTTTAAATTGAATTGAATCATAGTGTTTTATAGTAGCAGTTAATTTGGCATTCCCTATGTGAGAAGGATtgtaatttttcatatttgtgaATGTTATGTGGCTCTCATATTAAGA----CATTCTCTTCATAGCTTGCTCCAAGATATTTACAATattattgtttctattgtttagattcaaataaaaataaactgctgT-AATGAGAACAGCAGAGTGAGAAGTGATGTCAAATTTCTGGGTTTCAGAGATACAaatggttttctgttttcctctttgtaCTCacccatattttgaaatttcct--aCTTTGAGCAAAGAAggacaaagaagaaaaccaaaac-tgCTTGAAATCTGACTATCTATAAATA-------GATTTAGTTA---GCTTTCTACTCTATATTCCTA--GtctatttcagtttttaagaatATGTTGACAAAGCTAAactatttgaaaa--tgttttaaaaatgtttttaaagtcacACCAATGAATACACATAAGCATTCCTCTCAGAGTGTTTGAACTATCTTCATGTCTCCCATAAAAATTGCAAACTTTTGAGAGGGTGGGGACTATGTCTCTACATCTTTGGGTCCTCGCTGTATCTCTA-GGCTAAACCTTAAACATAGCTTAATAATTGCTAG-----------------TGGGCCAGGGAGGTA-------------------------------------------GATTGATGGTGGAACACTTCCCTAGCATGTTCAAAGCTGGGTGCT-------------ATCCCCAGTcctagaggaaaaaata------------------------aaagaaaagacaacTGTGGAT---------------------------------------------------AACTTA-----------------------------------------------TGAATTACTAAAAGTT------------------TCTCCTATCTTAGTGAC---------------------------CATTTAGTGACGTCTCCACAGTATAGTTACTCATTCACTCAA----TATTTTCTGAGTGTCTGTGCTGCTTACTAAGCTACTACACTAAGTCCTTATTAT-TCCCAGAAATGCATTGAACAGGAATTCTTCTGTAAAAGCAGAAGGAGTGAGT------TTTAAAACAGGTTCCAGCAGTTAGTGAACTTCACTGAGTTTTGCTGTCCTTGGGCAGCATAGTGATCATAGCAATTAGGAAATG-TTCAGCTACAAGTAAGAGAGAAGGAAACTCATATACCCTAAGG-TGTAACAATGCTTCCTGTTTATTTTATCAGTAGT-TGATTTTAGATGATTACATTTTTTAATAATATCAgggcttcttttatttttttaaatgttcagaatTGAACCAAAGGCCTGTTCTCAGGACTTGGGTCTTTATCTCTGaaattttcttggcttttttATGGTAACAACATGTTAACACTAGATCTAGATATTATAT----TCTTATAAAACCATcccaaggaaaaggagaaaaagttggACTAAGTAGGCacttctaaaattatttctaaaagtacAAAACATTTCTTGATCAGTCCAGTAGACTTTCATT----CATGTCTCCTTGACCTTAGCTGTAGCCCTGGACATGCGTAGCTATGAGGGATAGTGGAAAAGAGTGCTTGAGTCTCTA-------------------------AACTGTAGTGTGGGACATAACCaagggacaggggctggggaacGGCTTCTCAGAGCCCACTGCAGTGTCCATTCCAGGGCTTCAGTGATTGGTTGACTGGCAATGGACTTAGATTTTTTGA------GATTGTCAGTTTCACCCCCTAGCTGCTAGAGGACTCCAAGATAATTGTACAATCTTTCTGATTCTTGGGTTTTTCATTATTCTGGGAGACATATGTCCGTGCATGTTCTTAGGACTAGCTGCAACAAAT--------TAGTACATTGAGCACAGGACCTAGAACATAGTAAATGTTAATATGTTAgtatcttggtttct

a score=13985
s chr3           154676367 302 + 160039680 tttttttCTGTACCACATTTATTGTTTCCAGCCACGAGGCTGATAAATACCTCTCCTGAAGACATATTGGCACATAATAGAGATTTGATGAATGGCAGCTACAGTGTA-TCCTTTTGGTCTTTGTGGAAACTATATATTGCCTCAGCTTTTAGACTTTAATTCTTAAAGTATGTCAACCAAAAATAAACTAAGTATATTGTTCAAAACAAGAGGAGGTGTATCCAAGGTGATAGGGAAAGAGGGTGAGGAAGGAGTTCACAGTTCATGCATTACCCTCTTCATCAATTGGACTATTTTTCTTT
s HiC_scaffold_1 141670769 302 + 233722169 TTTCTCTGtgtctcactttcttttttcttaaaaataaggctTATAAATACTTCCTTTGCAGGCATCTTGACACATAATAGAGATTTGATGAATGGCAGCAGTTGTGCCTTTCTTTTGATCTTTGTGTAAAGCATATATTGCTTAAGTCTTTACAATTTAATTCTTTAGCTATGGCagccaaaagtaaataaaatatacagttcAAAATCAACAGAGATGTCT-CAAGCTAATAAGGAAAGAGGATGGGGAAGGTGTTTCCAGTCCATAAATCACTTTCTTGTTCAATTAAACTAATTCATTTT

a score=55736
s chr3           154682201 2927 + 160039680 CCCTTTGCAGCCTCCGTACAGGTTAGTCATTCACTGCACAGACTTCTCAGGGTC---CCTTCTCGAGGCTA------CCTTCACAGACT-CACTTCAGTTCAGCGGTGAAAGCAGAAGGGTCCTTGTTC---ATGGGGTGGTTATGTCAGCATGT--------GTGAAATGAGCACTCT-----TATGAAGA-------------GAAGGCTAATGGTGCATTACAGT-TAGCTGTGGGAATTATTTTATGAAATGCGTGTTGTCTAGTGTGTTTCCTGTGTGTACTACACAGTTATAAGTAACTGTTCAACAAATGCTCCTGATAGGAACGTTTGCTTTCTAGAACTCCCCATCCCTT--ACCTTTCCATTAACTGCCTCATTAGCTTCTCTTACTCTGAGTTCTTTTTTTCTGTTAATGCATATTTTTAAGTGGTTGCATGTTTTGTTATTGTTGTTTTTTTGCTTTTTGGTTTTTTTTTCCTGTTTAAAGACATAGAAGGCTTAAAGGAGAAGATCTCAGAGCCATACAGCACACATTTCTCGGAGCTGGTGTGTCCCAGTCAGATTGCCACACAAGGCTTCCTATTGGTTGATCTCTGAGCACTGTCAGGCAGGCTGCCTTGCTAGATGCTGGCACAGTTGGAGACCTGGTTT---TTAACTAGTCATTTCAAAGCACTATATTAAGGCTATAAATAAAATAATATTATGGCTCGCCTCTGGATGCATTGTTACAATATGCTGGGATAAATTGTAAATCAATATTTAGCATAATTGTTGAGACCTGGCAGGTTTGGATACAAATAAAAAGTACTGTGTGATGTAATACATAGAACACTGGAGTGGAATCAGCTAAATCA-ACCCTACAAAGACGCCGGCTTCAGAGACCTGC--TCTAATTCTAGTTGGCAAGAatatatatatatatatatatatatatatatatatatatatatatatataATAAAAGGCTTGAAATGAATTGACCTTCATGT---TCACTGTCCTGCATTGGTTTTTCTCCAATTTTCCTCAGAGGGATGTAT---TTCATCCCCACCTTCAAGGAACTTTGT-TTTCCAAAGTGGTTGTGTA---------TGCTTTGCA---AAGATGCATCCTCAGTGCTGTGGGCAT---GAGGACCAC-----TGGAACATTCTGCTTGCTAGTAAAGGCAGGGGATATGCAAGAAGACATCAAACATTTCCTCCTGCCATGAGGCTATCAGTTATTGCTCTGCAAT-GATGAAA-GGAAGGCTCTGATCTTCACCTGCGACTTCTATAAATGATACAAATATGCACCTACGGATTAGA-CAAGATATTTTGTTGCCATTAACTGACCTACTCATTTACTGGGTG-----------------------GTGCCAGGCTCCACA-------------TAAGAAGGGCTATAGGAAGGAGCCCATAGAGATC--AAGAGCC--ACTGAGTATTAATGAGCCTTACTCTGGTAGAAAGTC------------------------AACAAGTACTGTTCTATGGCCACTCCTGGCATAGTCTGGCTTG---ATTTTACGTCTTTGATTTGTGTTCATCAATAGATCACACTCTCTTTTAGAACTTTATATTCTCTGACTGTAAAATGATTGGGCTAGCTAGATCCTAGGTGGCCATTTATGAATGCAAATTTTATGTGCAAATGATGT----CACAATACTTCAAAGTAAATATATGTTCAGAC-----ATGAAAATAAGTCTTCCACAGCAGGAA-----GTAGGCA-CTGGCTGCTGAGTGTCAAGGGAAGAAGTCGGGAGTTCCCCGGGGGC------CATGTGTGTGGGTGTGGGGGTAGGACTAGCTCTGACCTTCAGGTTTCTGGTTCTTAGTC------TGTATTAATTTCATCAAAGTTTTCATTAAGTAGGAAGC----AATATGGATTTCCCTGCTGTAAATAGTGGCAGAAAAGTTATTGTACATCTTAAGAGGT--GCTGTCTGGTCTCATATTTACTATATATTCTCACAGTTACATAACAGTCATGAAATTTTCAATAATAGAAAACTAAATTCTATGGAATGGAGG-----------------------TGCCGTTTTGTTCTGCTTACTGATACTACTACTCTCAGCTGTTTAGTTTGGAGATGAT-ATTTCAATTTAGACACATTTA---CTTCTCCATTAGGAATCTTGATGAGATTCTA-ACCTTAGATTTGGTAGACTGAGAAACACACGACAAGTT--CGTTCACATGGAGCTAGATTTCCA---------------------AATAGACAAAG-GAGAAGTATTTGAGTCAAGGAACAGAGCCTTTCTGCCGTTG-ACTACAAGGTAATGCACAAGCAGAGAAACCAGGGCAGTCTGAGCTTTGCTTAACAAGCCTTC------------CTTGATTCACAAGCTGCAAGCACA------CTGGCTGGACTTGGAAGCCCAGGAAGGCAGCGGAGG------------------------------TTTGTCAAGACCCT-CTTGAGCATTCTCAAGTTCTACAAATTGCAGATTTAGTGTCATCTGAAACACAAAGCACCTCTCAACCAGACTTTGCCTTCTTATTAATAAAACTGTGCTTGTTCACACAAGTCTCACTTGAATCTATTCTGTTCAGCATAAAATA----CACCAGTTTTCCCAGGCTGGTACGCAAGGTAAACCTTCCCTTTCATGGTAATGTAATTAAATACCTTGCATAATATTTTTTAATTGAAATGTATATG-AAAATGATTCTGTACTTGACATAATTTTTATGTCCTTGT-ATGAGAGATAGGGAATAGGAGAAGAGCTAGATGAGTCCTTAGGTCAA----TGCATGGGGAG-------TGTCAGGCAGAGGTCCATACACTCTTGTCC-------------------------------------------TGAGACATATCGCCTATCCCATTATGCATATCATTA----TGTGCTGCTAATctggattttcaggaaataaaa---agtcttgatttaaggtatttgtcaatttctgtggtagaaatctacccacaaagtc------caggctaccaatatCTTGAAATTTTCTCAAAAAATTTAATACATATCTCATGTGTCACTGGGTGAGAACACACTCCAAGAGACTGATGTTACTAGGTTTTAAAGTATTCCTTTTTATCTTTTATATTTATTTTATGAATAAA
s HiC_scaffold_1 141675417 3117 + 233722169 CCCTGTGTGGGCT--ATGCAGGTCAGCTATTGATTTCTCTAACCTCCCTAGGTCATTCCTTCTCTGGACTGAACTCCCCATCACAAAATATGGTTTAGTCCAATGGCTAATCCTGAATGGTTTCTGGTTTAAATCTAATTCTTCCTTTTACAAATTATAGCTAGTAATCTATGCACTCTACCTTTATTAACACACCTTCAGGGAGGGAGAATAACAGTGT-TTACAGGGTTGTTGTGAGAACTAAAATATGTAGCATGTGTTATAT-GAATGTTTGCCGTGTGCATAGCATGATAGTAAGTA----TTCAATAGATGCTTGTCCTGACGATGATTGGTTTCTAAATCTTTCTTGCCTCTGCACCTTGCCTTTAATTGCCTCATTATGTTCTGttaatttgaatattatttttctgttgatgtatatttttaaatggcc------------ataaaggtttttttttttttt----ttttttttttgcttaaaga--tagaaaaattgaAAGACGTG------------CACAGCATGTCTTGCAAGGGCCAAGTGCCCCCCA--------------------CCTCCATCATCTCCTTTCTGAGCACCGTGAAAC----TCTCTTGCCAGCAGTCAGCACAGTTGGAGACCAGTTTTGTTTTTACTAGTCACTTCAAACCATCATATTAAGGCTATAAATACAATAATATTACAGTTTTCATCTGGCTGCATTGTTAGGATAAGCTGGAAGAAATTGTAAATCAATATTTAGCATAATTGCTGAGATCTGGCAGGATTGgatgcaaataaaaaagaatgaagaatgtaATATA-AAATCGTTCATATGGTATCAGTTCAATCACCCCCTATAAAGTGGCAGACTGCAGTGACTTGTGGTTTAATTTTAGTTGGCAA----------------------------------------AGAGTTTTGttataaaggaatgaaaaataattgaCCCTCGTGTCAATCATTCTTCTGTATTTGCCTTTCTTTGAGTTTTCTCAAAAGGACATACATGCTTTTCTGTATCTCTGGgaacctttttatttctaatgcaCTTGTGTAGCACACTGTTActtgacaaacaaaacaaaacaacaaaactgagaTTGTTTGTAGGATCATACACATGGAGCATTCGTATTGTTAA-ACAACCAGAAGACA-ATGAGAAGGTTTTTGATCCTTTTTTGTTTAAACTGATTGT-AGTTATTGTTCTgaagcagaagaaatgaaagattaTGATCTTTGCTTGTGGATT---TAAAAGA-ATAGATATGTATCAAAGAATCGGAGCAATATACTTTGTTTCAATTaactgatttattcatttattcaataaacacCAGGAAAGTGTTTACTGTGTACAGGGCTCCATAATCCATGCCTCGGTGAAGGGAACTG-GGGTGGAAACTTATGTGAATCTGAAGagcaagatgaaaaagaaatgaaagtaattttGGTAGAAAGTAGTGAGACAAGGATCCTGGGAAAGGGATGGGTCCCCTTTGATGCAAACCACTGTGACATTCTGGCATGTTCTTTTTGAGTTTTTGCTTTGAATCTGTCAATGAGCCATGCCTACTTTTGCAACCTCA-GTTTCCTGAATAAAACATTACGGAGTTGACCGAATCTTAGGTGATCATTTCCACATGTCATTTTCATT----AATCACATTAAGCACAGAAGCTCCAAGTAAGTATGTTTTCATACCACTTAGAGAACCTAGTT--------CAAGAAACTCTGTCAACATTTTACTTCATGGGGTTGGGAGAAAAGACT--GACTTCTCCCGAGACATGCATCATGTA---GAGTGTGGACTTAGAA-----TTTGAACCCAAATTTTCTAGCTCCAAATCATATCATTTTTTTATTGTGTCAAAATTTACATCAGGCAGGAGGCAGTTAATATAGATTTCCCTGCCTTACAT----GCAAAAATATTATTGTACCTGTTTAGAGATAAGATATCTGGTCTCACATTTCCTA-ATTTTCTAACCTTTAAATAATAGACATGAGATTTTTAGTGATGAAAAACTAAATTCTCT-AAGTAAATGCTACAGTTCAACTttgttatttttggtattttgctGTTCTAGTTAGTCAGACTATATTGAGAGATTTTATTTGGAGAAAttaatttcaatttaa--atttttaaagcttcTTTACTAAGAATCTTGCTGATATTCAAGGTATTCGACTTGGTTGTGTGGCTTCAGTgtgatgagtttctttttttgtggagCTGGACTTCTGTATATTGTTGCATATTTGTGTAATGGACAATGAGAAATGCATTTGAGTCGGGGA--AGAGCTCCATTACTGGTGAACTGTGACCTCACATGAAGGCAATCAAACTCCTCCATTCTGTGATCTGTAAAACTTGCCTTCCCAATAAAAACACTTGATTTATGAGTTACAGAAACATTTTACCTGGTTTTTATTAGATGCCTGCCTTGGCAGTAGAAGACCCTCCTTGAAAACTATCAGATCTATAAATTGACGGAGATCCTCCTTGAACACTATCAAA-TCTATAAATTGCAGGTTTAGTGGTTGTTGAAATGCAAAGCACCTCTCGATTAGGCTTTTCATCTTTAATAATAAAACTGTACTCATCCCCATAAGTCTCACTTG-----ATTCTGTTGAGCATAAAATGGTGTAATCAGTTTT-CCAGATTGGTAAGTGAGTTGAACCTTTCCATTTATGGCAATGTAA--AA-----TTGCATAAAATTTCTTGATTGAAATGCAGCTGAAAAATGATTCTTT--CTGCCAGAATCCTTATGTTCTTTTGAAGAAGGATAGAAAATAGCTAAACAGGTACATGAGGCCTTTGGCAAAATACTGCATGCAGAAGATGAATTTTCAGACAAAATCTATTAAATTCATGcctctgtgtatttatttatatgatgAATCATGCTATTTGTTCCCTGTGCTACATCTCGccacttacttttaaaatttaatcagtgGTATGCTGGTAAATTGGcttttcaggaaaaagaaaacagctctGATATGTAATGTTTGCCAAATCCTCTGGTATAAATATTCCCATGATGTCCAATTTCAGGCTATCAATGCCTTGGAAAATTCCTGAAAAATCTTA-ACAATTGTCTTGTGAGAGCTAGTAGGAACCAGTTCCAGCACACC-ctcttagtaatttttaaa-tatacttttgtgtattttctaaTAGTTTTATGCATAGA

a score=154088
s chr3           154691375 10127 + 160039680 [encoded data, 11255 characters]
s HiC_scaffold_1 141680401  9758 + 233722169 [encoded data, 11255 characters]

a score=87238
s chr3           154702790 4353 + 160039680 [encoded data, 4857 characters]
s HiC_scaffold_1 141691100 4604 + 233722169 [encoded data, 4857 characters]

a score=131457
s chr3           154707657 6495 + 160039680 [encoded data, 7084 characters]
s HiC_scaffold_1 141695735 6686 + 233722169 [encoded data, 7084 characters]

a score=51084
s chr3           154719846 2530 + 160039680 GAACTTAAGGTGGAAAATAACAAA--TTCTTCAAATCTTTATCATTTACAAAAATCAAAGCCAAAATCTAC---AGAGACCTGGAAAGGAGTGTATTTGGTAATGCTTTTGATTTTTGGAAATTGTATACAATGACTCTATAAATATTTTGTTATAAGGTGCTTAGAATTATCTCTCTCTGTTCTTTGTATTGTAAAATCATATGGGAGCAGGAAGCCCCCTGGGGAGA-------CACTTA---GTCCCTGTTTCCTCTATTCTAGGATCCTGGAAGGATTTATAAAACAGCGCCGCATAGCAATGCAGTTATCACAATGGTCTATTTTGGGAAAAATGTGCACCTATCTTATGATGACATAGACTTCCGAGATGAAATCAAGATTTACCAACAGCACTGTGGAGGAGAGAACCTTTGTGTCTACAAAGGGAAACTGCTTGAGAAAGGTACAAATGAATGTAGGA------AAAAAAATCTTGGGTTAGTATTCCAGATAAGCTGTTGTTGAC-ATAATATCAAAATAACTTTAACCACTTTGTGAAATTATTCACATCCAGGGAATTATAAACCAGCTGCCTAAGAGTAAATCTAGATTCACAGCTCCTTGATTGAAATGGGAACAGCGATTGCACTTGCAGATTGTAGGAGAAAGAACTTGGAGTGATTTAACCTGGTAACAGATTGATTTTTGAAACAGATATATATGATCATTAAATGTTTTAGAAATATGCTGTCTCAGACATTGCAAGTTAACTATTTGGTTTTCCATAGTGAATGATATCACAGGTAATCAAGCATAAGAGAAAAATTACAGATTGGTAATTTGTT-----AGAATACATGGAGGCAAAAATTGAAGATTCAATAGATTCCATGATGAGTCACACCTAAGTAA--TGATGTAAAACATTTTTAAATGCCCATTTTAGTA-ACTTGTACTTTCCTTTGATCCTAAATCCATATCTGTTGGTATAAGAGGTTTTTATTA-ATACA--------TATTCCCACACACTGTATTGTAGTGTTTCCTTCAATATTTAGTTTAGTGGGGCAGCAATGGAAAG-AGGCATGCTTACAA-ACTACATTCTTTCCTTGTTTGCATAGGAAAGTCTCTTTAGGAAGCTCTGTT---AGTTTTCCTA---ACTATATAGGAAATC---AAACAGACTGAGGAGCTGAGAAAG-------------GGTGATGTTGGTGCACATGGAATTATTTTTTTCTTTGAAATCTCTTTCTCCAATCAAGAAGAGTG---ACTCTAATAAAAACAGCCACAAATATAACAACAGATTTGGTGATTACAAGTTTTAAGCCTCCCC---------AATAAACAGTGCCGCTGGAACATCAGCTTTAAGTTAAAGTAAAATAAACCATGGCTCTCAGTTTGTGGAGAACTGTTATCATTTTTACAGATTTGTGGAATGTGGGAATTCACTCAGGTGTTTCTCA----GTCA---CATC-CAGCATTCCTTCCCATCTCTTCGTAGATGAGGGAGGGAAGATGCCCCTGAGCTGGGGTGGCTTTTGAAGG----ATATCC----CTATAGCTCTGG-CTAGGTGGGGTGGGGACTATGGTTCAATGCTACCTCAGCTTTCAGTAGCCAAAGTGCCAACCTTTTCCTGAAGGGAAAGGTATGAA--TTCCAATGAGCTCTGCATGTAGGGACAG-------AGGCACACACCCTTATCTTAAACCAAGCAGCTCGGACACGATTGTTTTTACAAGTATGTTGTCTGGGTGTTAATTTATGAGAATCAATGAAAGTATCTATCATGTAAAATTAGAATGCTTATGTTTAGGTGTCTATGTTTAGACAGTTTGCTGGGTTCTGTATCACACTTGATTCAACAGCATGTATACAGAACAGCTATTTAG----TGGAGAAAGTAACTTTCCCAAATGAAA--------TCTTATTTGGGTGGC----CTAGCAAACAACACATGGGGTGGACCAAGAATGCAGACCCCACAGCTAGC-TGAGGAGGGTGCTACTGGACAGGTGTTATTTTGTGTATACACTGATCCTGGGTCTCTGTTGA---GACACTGAATAATCTTACATAACAGCTTGGAATGGGGACTTAAATA-ATGGATTCTGTCCCTGCTGTAATGTAGTCTCCCCTTA-GCTTGATCAGTCTGAGAG-AACTGTTCAAGACTGAAGAGTGGCTTTGTTAGGAGCTACCATGAGGTGCAGCAGCCAGAGGGATTTATCCAGGCTATCAAAGATCTGTCTTC-----------AGTGGTGTGTGATTCTGTGAAACGAGAATAGGTTTT----AGGTTTCCGTAGAGAATAAATAAAAGCATCCGTTTGTACTTTTGGAATAGCTCACTCGCTGAAATGTGGCATTTGTTAATTTTTTTTGCTTCTTGAAAATTAAGAATAACAATAAAGATGATGGAAGAATGGGGCTAAGAGCATCCTTTTAGTCCCAAAGTAATTCCCAGTGCTTGTTGTAGTCAGGTTTGTAAAGTCTGAGGCACAGTGAGCTGCTTTA---ATGCACCCACGGAGAGCCTGGCCTGTTTTCACTTCTCATAAAGACTGCAGTATC-TTCCAGGCACTCTGACTTGCTGTGTGTATCCTTTCAA--ACAAAGAAGCTTTAGCC
s HiC_scaffold_1 141712247 2484 + 233722169 GAacttaa-----aaaatgacaaactttCTCTAAATCCCCAGCATTTAAAGACA-CAAAGCCAAAATCCATGTTAGAGCTGTTTAGAGGCATCTATTTTGCTAAGGACTTGACTTTTGGGGCTCCATGAAATTGATACtttgtacagatttttaaaagctatttacaTAAAactggccatttttattttattgtaatgtCATATGAGACTAAAAGACACTCTGATTAGAAGGTGATCACTAATAggcctcttttgtgtcttttctaGGATTCAGGAAGAATTTACAAAACATCACTGCACAGTAATGCAGCTATTACAATGATCTATTTGGGGAAAAATGTGCACCTATCTTATGATGATCCATATTTTCGAGATGAAATCAAAGTTTATCAGCAGCACTGTGGTGGAGAAAACCTGTGTGTGTACAAAGGCAAACTGCTTGAAAAAGGTACATGTGCAAGTTGGATTTCTCCTAATTGCTTGGGGTCAATGTCATAGATAAACTGTTGCTGATAATAGTATCAAAATGACTTCAATCACTTTATAAAATTATGCATCTCCAGGGGTTTATAAACCAGCTGCCTGAAAGTAAATCTAGATTTACTTCCCCATGATTGGAATTGAAGCAGCAATTACTCTTGCAGATTGTGGAAGAAGAAATTTGGAGTGATTTAGCTGGGTAACACATTAA-TTTTGGGATAGAGatagatatctttaaaatattgccCAAATAGGCTGTCCCTCAAATTACAAGGTAACTATTTGGCTTTCCACAGTGAATTATATGATACAttat----tctaagataaaaataacagaTTGGAAATTTGTTGTTTAGAGGTGTGTTGAAGT-AAAATCACAAATCCAATAAACTCCAGGGTGAATCACGCCTAAGTGAGTTGGTGCAAAATTTGGCTAAATGACC-CTTTAGTATATTTCTTCTGTTGTTTGATTGTAAATC----TGTGTCAGAAAAAGAGATCATTTTTACATACAATATAAGTTATGCATATTTACTCTAGCAT----TTTTATTCAAGATTTAGTTGCATTGAGCactggtgaaaagaaaacacatttatggTGTTTTAGTCATTATTTCCTTGCTTAAGAAGCTCTGTTGAGAGAGTAGTATTTTGAGTAATCATAAGTAATATTTGGGAAATCTTGACATAGACATAGGCATTAAGGAAGGAGACCTAAGGAAGGAGACCAGAACACACATGGAAGAA------------AAATGAC---catcaatgaaaaatatttcacacCCTAAATATAA-------AACTGTAACTACATATCTAGGAATTACATATTGTAAACCTCCTCATCTACAGGAGTAAACAG------GAGAACGCTGGTTTTAACTTAAACTAAAA-----CATGATGCCCAATTACTCTAGGAGCAAT----TTCTTTCAATCTTG-----TATGAGATTTCTTT------TGTCTCATCTTGTCAAGGCATCTCAGAATTTATTGCC------TCCTAGATGGGAAAAAGGGTGGACTCCTGCATTGGTGTGGGTCCCCGAGGTCACATATCCAGAGCAGGAGCTGTGTCCTTGATGAGGTACAGGACCTGGCTCG--GGTGCATCAGCCCCAGGTAGCTCC--TCTCCGCACTTTAATAATGCGAGAGGTGTGGAGCTCCTAATGAGTTT----GGTAAAGATAGCAATGTAATGCATACACTTGTTTTTTGAAAGA----------------------TTACAA--------TTCAGCTCTCAATTTAGGAGAATTATTGAAA----CTGACAGTGAAAACCG------------------------------------TCCTGGGTCTTAGATAATGCTGCATTCAATGAGATACATCTACAGTATGCATTTGGCTGCTGGA-AAAGTAGTAGatgcaaatgaaaagaagaagCCATAGCTAAATGACTTTTTTGGTAGAGGACATACTCTGTGA--TAAGAGTGCGAAAGCTA-AGCGGGTGTGAGGAGGGAG---------------------GCATGCACATCTCTCCTGGGATTTTTTTGCAATGGCTTGGGAAATTCTTGAACACTAGCATGGACTGGAGACTTAAACATCTGAATCTTGTCCATATGATAATTTTGTCTCAGCTTGCCCTTGATTGCTAGGAAAGTAATTgttcaaaattgaaaatttggGTGgcttggcattgtcttgaggtTCAGCCATCTTAGCAGTTCAGCTGAGCTGAAAACAATCTGCCCTTTTGACAAATCAAAGTGTGCTCAATTCAGTGAAACATGAGTAGGTTTTTAGAAGACTTCGGTTT----TAAGCAAAGGACCTTTATCATATTCTTGGAAGAGGAAACTCATTAAAATGTGGCAGTTGCTAAATGATCTTgcactttt---attaaaaatagcaataaa-attatttaagaatgCAGC---AAGCCATTTTGTATTACCAAAGGAATTGATCTTGTCTGTGGGAGGGAGATTT-TAGAGCCCAAGCAAAGGCTGACTGCCTCCTCTGTATACATATGAAATGACTGA-ATATTTTTACCACTTGTAAAGAGTATAGTTTCtttccagatatttttatttgccaTATTTATCTTTatgatggaaacaaaactttggcC

a score=13896
s chr3           154727376 468 + 160039680 TTTGTGTTTGATTCCAGACACCTTTCAGTTTATCTCCAAGCGTCACCACGGCTTCCCCTTCAGCCTCACCTTCTTTCTGAACGGGATTCAGGTGAACAGGATCAGCTCCTGCTGCGAGTTCAAGCACCGTAGAAGCACCCGCCTAGGAGGCAAGAGAGGCTACTTCGGGTTCGTGTGTGTGGAGAAGGCATCTCCTTGCTACAGGTATGGGAGCA--TGACCTTTGCTAGAGAGGACAATGCCAGGTTTTCCTCC-----------------ACTAATGCTTTTCTTTGCACAGT-TCTCAAAGAAAATCA------ATCAGTATA--------------------------TACAACC-------------------TTATAAGACGTCAAGCAGATTCCCAAATGTGTTAT---ACAGATG-AGATAAAAGGTGGTGACATTTTGAATTCTGTCTCACTTCTCATCGCTTACCTCATACTGCCTTAACTTTTACCTCTGTGGGGAGAGGAGCCAAATTTTCATC---ATTTCTTTCTTGTTATT
s HiC_scaffold_1 141720291 535 + 233722169 tttttttttcatcccagAGACCTTTCAGTTCATTTCCAAAAGACACTATGGCTTCCCCTTCAGCCTCACCTTTTTTGTGAATGGCATGCAGGTGAACAGGTTGAGCTCCTGCTGTGAATACAAGCATCGGAAAGGCTCCAGGCTTGGAGGTAGACGGAGTTACTTTGGGTTTGTGAGCGTGGAGAAAGCCTCTCCTTGCTACAAGTAAGGAAACACTTTTCCTCTGGCGGAGGG--------CAGGTTTGCCTGCCTTTTTCTTCTGCTCTTACTCATGCGTTTATTAGTGCAATCTGTTAAGCAATATCAGAATGTATGAGTTTAGATGACCTGGGATAAATGATGTGCACTACAACCCTGagtatttgtatttaaattataAGCTATCACCCAGATCTCCAGATATCTTATATCACAGAGGTAAGTAAATGTTGGGGTCCTTTTAAAT--CATCTCTGTTTATCTCCATTTCCGTGTGCTACTTCAA-TTCTGTCTCTGAAGTAAGCAAATAGAAGTTTgcctttgggtttttgttttgctttt

a score=19676
s chr3           154731434 593 + 160039680 TTTGAGCGTCAGTAATCAGAACCATCATTCTGAATTACACTCAGAAGTGAAAGAGGGAGTCAGTGTTG-GGGGAGC-CAGATGTTACTCACTTTGT----CCAATTCCCTTCAGCAGATGGGCTATAAAACGTCTGAGCTTTCAGCAGGGAGGCCCCAAAGCCTTTACACAG-CACAGCATACATTCAAGGTAGCAGCGAATCACAGGCTCTAGACC-CTGGATTTGCGGTTGCCACTGATCAAGGAAGAAATGTTTGCACAGAAGGCAAGGCTAATAATGACACCCTGTGAAGATGTGTGGCGTCGTTATCCCAGGGTACGACGCACACTAAGCACATCATCGTGACGGGA--AAAGCCCTCATCATACTTAATTTGGGTGAGATGCTTGGC-TCCCACTTCCTCTTGTTCGACAGCTTGATCTTCAGCTGGAGTGCAAATCCTCTCAGCTCTGTCACGCAAGGAGATGCTACAATGTTAGGTGATAGAATGTGGTACTTCTTGATACTACCATTTTGAAAAAAACGACCAAG--CAATTACCATGCTACTTGAAGACTCAAGATGGCTGAAAATTCAGTATAAACTTCAGATTAAGAAATTGTC
s HiC_scaffold_1 141723910 583 + 233722169 TTTCAGCTTCAGTAATCAGAATCAACACCTCAAATTATGCTCTGAAGTCAAATAGGTAGTCAGTGACGAGGGGAGCACAGATGTTAGTCACTTTGTTTGTCCAATTCCCTTCAGCAGATGGGCAATAAAGAGTCTGTGCATGCAACAGGGAGACATCAGAGCCTTTACATAGTCACAACATAAACTAAAAGTAACAGTGTATCAGAGGCTCCACATCAATGGATGTCGGGTTGCTACTGCAAAGGGGAGAGAAGCTGGAACAGAAGGCCAGGCTAGTAATCGTGTTCTGTGAAGTTGTATGACACCTTCATTCCAAAGAAAGCTCTGTGCTAAGCACCACATCATCCCTGTCTTGAAATATTTATCATGCTTAATAGGGGTGAGGTGAGTAGAGTTTTATTATCTTATACTTTATAGCCTGGT----AGGTTGAGTGCAAATCCTTCTAGCTTTAT-------GAAGA------AATGTGAAGTGCTATCACACAGTTCTT----ATATTTGCTTGTTGGGAGAATTTATTAAAATCAATTCCTGTGCTAGTTGAAATCTGGAGAT-GCTGAAAG-TCAGTGAAATCTTCAGTTTAAGAGATTGCC

a score=26376
s chr3           154733112 2442 + 160039680 TAAAATTAAGAAT----TATGTTCATATACAAGATTTTCatattaataaaaataaaattgtttattttaaatCAGTCTATGAAAACAGGTAGCATA---TTTTTCATAATTTT----ATTAGAACATGGTACACATGTTATAAACT--TGAGTTATAAAGTTTATGACTCCATCAACCTAC-TATACAAGTTAATAAAGGCTTCATGCTGGTATTTCTCACAGGTGCATTATTGCAATGGGCCTTGACAGAAAACCATCTTCAACGAAACCTAAGAAGGAAAAGATTACTGAGAAAAAGGAGGAGCCACCAAACAAGAGTCAGGGAAAACTGAGGAAGGACAGAATGAATGCACCATCGAAAAGGAACGAGATGGAGAGGAAAGAGTCTTGTGTCTCAGCTGCATTTTCAGCTGAGGAAATAAAATTAGGGGTCAAAGAAGTGAGGACGGCTATTGAGGAAATGGAATGGAAGGGGAAGTCAGGACGAGACGTCTGGGAAGAGGACCAGGACAACGCTGTTAAATACGGTAAGCCAGAGCAGCTTCCCTCGTCGTTACTGCTG----------TCTCACGTCGTCATAGT------------AAGCTGTGCACTGTAGCTTGGCT------GTAATCTGTAGGCAGCC--------ACGGCCTACTCCTTTCACTTTGTCCTGCGCTGTTTTGAGGGGAGGCTTCCTGGCTTCGGAAGCGTGAGGTGCTTGCTACAGGTATGAA--GATATAAGGAAGTTTCTGTCCTGCTTGCCAGAGCCAAGATTC-----ACACCCATAGAGAGC-CTTTGACCAAGTAAAATTGTGTCTATTTATTTAGTTTTTGGACATGATTGCAGGAGTGACATTGGTTGTCCA--------------TTTTGGGTTTGGTAAGTACAATATACATGATCATTTGGAGCTAGAGGACTTACCT-TCTAACAGCAGCTTGTACTCAGTCAAAAGTCCTAGAGTCTGTCTGTCCTGTTTCTCTACCT--------------------------TTTCCTCTCTCTTTCG-------TCTCCCTCTTCCCTTCTTGACTCCTCTCTCTACACATCCATATGTACACAGACGCAAG------CACACTGAGAGACATACACTCACACACCTGCGCAGTGTAACCTAAAGTGATAGTAACAAGAATAACGTCGTCGCCAGGCTCTGAGCAGTGCGTGTTGCCAGACACTTTCCCCACTCCCTCCGCTCACTCTCACCTACGTGGAAG--CATGCTCCTCTCTCCATTTTACAGTTGGAAACAGGTCTCACTCATGTGTAGACAGCATAACAGAATTCCAATCCGTACCCATGCGGATCTACTCCAAACTATTGAATC---------------ATTTACTCTGTACCAGTGTTCTCAGCTATTACAAGGCCACTTGT-----GATC----------GTGTGTTCCCTTACTTCTTGAACACGAAGGCTGGATTAGTGGAGTAGTAGCCACAGGTTCACATTCTCTATGGAAGTTCTGGCTTC---AGAATCCTCTTTCTTACATTATGT---TGCTGGACAAGAGTTTCAGAAATCCTGGAGGAAG----------TCCCAGCGCTCTGGGTCTCGTG--TGTTGATGACAGAGATAATGTGGCTATTTC------ACTCCTAATGCTGGAACCCCACTCTCTTCTCTTTATGATCTGCCCTAGC-TTTCTTTCTCCTC-TGGATGGGGAATTTTAAGCCATCAGGCATCGTTGCAGCAATGGCATAGA-----------GCTACTTCCCAGTGCTTTCCCTCATAAGACATGGGGCT---TGAAAAGGATAGGCAATGGGAGGC-TTCGCCGCTTTCCCTTGTTTTCCTTTCACCAACATGGTTGT-------GCTGT------GACAGT----------------------------GGCCTTTACCTCAA----GGTTGCTA---GGCTTTAACCGCCAATTC-CATGAAGACCCCAGGAGAACTGGCAGCA----AGTCACACCTCTCTGCCTGGCCTTGGCTGATCAC---------ATAGCCGGAGTG-GTGTTAGGAGAGATTCTAGCAGATGCAGTGCTCCACATCTGTTCACCCAGTGCCCCTCCTCTTAAAGTGGGTATTTGAGATAA--CAATCTAACT----GAAGA-ACTTGGGATAGGAG---AGCAGACCTTATGAA-AGGAAGGATGCTCAAACACTCACCACCAGGTCATTCCCATTTAAGCCATGAGTAGGTGACACAAAGGTATCTCTTCTTGTGTTCCAATGAAAACGGAA-GGCTG---GTGGCTGATGGAGGA-CTGAGTTTT---CCTAGGGGTGATGAGTGGTTAGTACAGCGCTCTGGCAGGGTTGAATTTTTATGTTTTGAGGGGAAACATAGAAGCCTGTCAAAAATAAGATGCAGGGCTCTTTCTGTT------TTCCTTGGATGCCCCTT-----------------------------TCCTGTCCCTGGCCTGACTGTGGCCAC-TGTGCTGCTCTGGTTTAGAGTGAGGTCCTCTAGTAACCTGAATTGCTCCCAAA-----CAACAGCACTTTAATGTGATTTGTCCCGTTTAAGACCAGCTCTTCCACTGCCCCTTGACAACC-TTGTTAGTGCTGATTCAT-ATGTTCCTGATG-ACCTATAGATCATGGTTTGGGTTGAGTATTGCTGCTTCTAAT
s HiC_scaffold_1 141727306 2586 + 233722169 taaaattattaatatgttgTGTTCATGTATGTGTTTTTAGTGTCAATAAATA-------GTGCATTTTAATTAA---TATGCATACCAGTAATATAGTATTTCTCATAACATTCCCtattagaa-----taaatattttaaaagctatggGGTTATACTGTGT---------------TACATGTGACAGTTAATATCTACTTTATGTTCATTTTTTCCATAGGTGTATTATTGCAATGGGCCTGGACAAAAAACCATCTCTACTGAAGCCTAGGAAAGATAAGAGCTCTGAGGACAGAATGAATCTGAGAAATGGGGAACAGAG---CCTGGGGGGGCCTGTAGTGAACTGGATGCCAAGAAGAACTGAGACCGAGCAGAATAAAACCTCTGTCTCTGCCAGTTTCTCAGTGGAAGACATAAAACCAGAGGTCAAAGAAGTGAGAACTGCTGTGGAAGAAATggaatgcaaaagaaaatcagGACAGGATGTTTGGGAAGACAGCCAGGGTGATACCTTTAAATATGGTAATCCATAACAGGGTTCTTTGACATTGCTACTGCAGTTAGGGCTTTTCAGCAGTCATTATCAAACATTTTCAAGACTGTCTATTATGTGTTGTTTCTCAGGGGGATCTTTAGAGAGCTCTGTTGAGATGGAGGGATTCCTGACCTGTGTTGTCAGCTGTTCTGTGTGCAGTCCT----GCCTGGGCAGCT---GTTGCTGG-----GATATGAAAGGGGACAGGGAGTTGACTG---TGTCAGCCAGAG---AGGTCCTGTCGACTTCCAAAGAGATCATTTTGACCAGATAGAATTTTGCctattgctttagttttt-----ttttttttaatgt-actttctTTGTTCAAGTCAATGAATAGCTTTGGCATTAGGCAGGTATAATCTCTATGATTGCATGGTGATAAGAGTATTATATAACTAAAAGCAATT--GACACAGGCTTGGGTCCTGGAGTCcatctgaattttttcttttgctttcttttttctttttagtcctcttggtttcttctctctctctctctctctctctctctctctctctctgtctgtctctccacacaaacacacacatacatgagagagagaagacagacagacagacacacacacacacacacacac------acacagacagatagACACACG-----------CACACAACTTTCCACACAGTATATTGCCA---------------CCATTTGGT-------------GTGGTAGGTATTACTCCTCCCTGCATTTTGCATCCTGAGA-------AACTCAGGAAAAG-CAGC-------TACTTGGGTTCATACCCAAGCTGGTGCACTTCCAAGTCTTAGATTTTCACATCatgtacaattttctttttccaagagGCCTCA--TAGTTGTGGGTGATGTGTCCAAAGATCAGAGAAATGTGAGTGCCCCTCTTCTGCCAGGAGACAAAGCCTGGATTAAGGAAGAACAGCCCAGAGGTT-GGGTTACGTGTAGAACAGCTGGATTCCCAAATATCTTCTTCCTCACCTCCTCTTACTGCTGCCCAGCGGTGTCAGAAATCTGAGAGGATGATTACAGGACCATCAGAGCTCTGGACTTTGTGTTTGTTGATTTCTGAAAAAGTATGACTATCTTAAAAAGATTCCTCTTTTTA----CCCATTTTC-CCTCTGTATGAACCTTACTagtgtttttttcttatcttgggttgagaattttaaaataatgg---tagCTACAGCAATTGCAAAGACATCCACATGGAATGCTTTTGTGTGTGTTCACTTTTAAGGCCTGGAGGTTTATTAAATCCATGACAAATGctagtctttcatttttgtcataaCTTTTCCTCAAACCAACATGGTTGTTACATGGGTTGTACAAGGGATAGTCTTCGTGCATATGATGCAGCATTTTCTGAGCTCTTTCTTTGGTGTTGGCTGCTAATGGGCTGTAAATGCCCATTTGTATTAAAATTCCCAGAGCAGCAGGAGTACTAGGGCTTTGGCTGTCTGCAGAGCACCCACTGATGTCCAGCAATGAGAAGCCAGAGAGAAGGGTAAGGGAGA---GGGCACAGGCAGC------CAATTGGT-----ATTGACCTGGGTCTCATGAGTGGCATGGAAAGCAAAGCAATTTACTCTCTAGAAGAGAAATGGGGTGTGGGGCCAGAAAACATCACAAAGAGGAAGGACACCAGGAAGGATGCCACTGGTTTGTTCACATCAAAAGCTTGGGTAGGCT-CCCAAAGG-AGCATGCCTTGTGCTGTGATGACCATGGGATGGATGTGTGTGGCTGTTGGAAGACCTGGGATTTAGATATGGGGGTTA-GAAGGGTGGGTGGAG---TCAGGCAGCCTTGGATTC-----TTTAGAGAGAAAATGCAGAATCATCTTCAAAATAGgatgcagggatttttttttcctgtggttcattacatgttctttcaattttatgctctattttaataatataacttTAACTGCATCCTAATGGTGGACACTTGTACTGC-CTGATTTTAATCAGGTGCCTCTGTGAAAATGAACTACTGTCAAAGGGGCAAATAGTGC----AGGCGATTTCTCCTGCTTTATGACA-TTCTTCCTCTACCCAGTTACAACCACTATTGCAGCTAATACCTGGTATTCATTAGACACTTGCAGTACAT------AGTCAAAGATTATTGCTTTTAAT

a score=64201
s chr3           154738020 1590 + 160039680 TTTTTACCTCAATCTTGTTTTCACAAAGGTGACATTTTCTGTGGATAGGACACTCGTTTCT-------------TTGATTGCAG-AGGGTGGGCAGTTCTCAAGTCCATTACCCAGGAGGCCC-----CACTG-AAGAAGAGCTGAAGTGTCTCGTAACTAAAACACACAAAAATTGGGAACCTTTTATTTCCTTCTATCTTTTAGCTTGAGGATAATTGTTTACTTGCTTAATTGGTTCTGCATGAGAGCCTGTTGCTGTCTGTCTTCAGTCTGCTGTCACTTTGAGATTTTAAG-TTTGGGTGGTGAATTAAGAGGAAACAATTAAATATGAAAGGTGAAAAATTATAACCACGAGAGACAGCTGGAGTTTATACGATGTGACAATTTGCTTTCCCTGGTACAAATTTGCTCTGTCCCTGTAGGGAATGAAGTAAATTCGAGGCTGTGACAGCGTTGTTCTATTTCGTA-GAGTTTTTATTCTTGAGTTGTAATTATTCTGTGCATTGTAGGAATGAACACTTTACACGGTTCCTGCTCTGGCTTAGCTCTAAAATCATCTTTAGAGCTTTGCTCATTGTCCATTCGGCTCTC----AACATGCTATTCACAG-GCTATCTCTCAGGTCCTTTGGATGTGATTAATTGAATTTTTCCACTTCACTATTAATTAGAGTGATATCCAAATATTTTGAACAATCTTCATATGAAATATGACCTCACTGGGTCTCTAGATTAACTTCTATTATTGTAACCCTGTTTTCCTCATTTTTAATTTACTTCTAATTTATTCTTTCATATAAAGCTCCCCCTTTTCCATT-TGGTCACCGTGGGT-AATGGTGTCCATTTGTAAATGAGCCTTTATTAGCTTCCAGCCTTGTCATTTTGGGCTTCATTTCTTTT-TGTGCTGTTGTGTGTAGCTGATTGCGGTCTTTGACCATTGACTATTAGTCATCCCTGTTTCATAAATGT--GTTAAAAAGCAGCAGAGAAAGACCCAGGAGCCAGAAGACAATGGAGCCAGAGATCCCATTAGAGTGAAGTAGTTGAAGCTCCCAGGCTTCTGTCTTCATTGTTACACTGAAG--CTTCTTCTTTCAGACTATGAAGAAGATTTTGAGGTAGATGATGAAAAACAAGACGAGAAGGTGGATGAAGATGAGGACCAGGCTGATGACCAGATGAGTGGAGGATCCAAGACACCCACCGAAAGTGAAAAAGACAACCGGAACCCCGAAAAGAAAATTGAAACCTCTTCAGAGAAGGCCC---------ATGACAGTGAGA---ATGAGGATACTGGATGCTCGGACAGCGAA---GAGGATGACAGACAAGGCAGGTGGCAGAGTGT-----------GGTACA--------CTG----TGAGGGGAGCTC--ACCTTTCCT-----TTTAAGGAAGACAGAT-------------------GTGTGACTGCCTAACCCAAGAGTCCCAGCCAGCCACCCCTCAGTGCACTTCTGAATTGCAGAGTTGTTTCTTCGTCAGCGTGTTTTCCTTAGTTTG--GGGAACTTT-AGCAAGATGTCAGATTAGGCTTGTGGTGAC-----------TCAGTTAAAAAGTTACT---------------ACATCCTTTTATCTCAAAATATTTCAGTacacacacacacacacacacacacacacacacacacacacacGCCCTCACA
s HiC_scaffold_1 141731174 1693 + 233722169 tttctgcttcaaCTGAGTGTTCACGA-------------TATGCACAGGGCATACATTTCTAAACTAGTTTTCTTTTACTGCAGCAAGGTGGGTCACTTTCAAATAAAT-GCCCTAGAGGCCCTAGCCCACTGGAAGGGAAGCCAGGATATCTAATAGTTAAAATCCACAAAA-TTAGgaacatttattttacttgtaatttttactttaaggGTAATTGTTTATTTGCTTAATTGGTTCTGCATGAGAAAATTTTGCTCTTCCTCTTTGGCATGTTGTCACTTAAAGATTTTTAGCTTTTGGTGGAGGAAAAAGGGGAA-CAATTAAATATGAAAGGTGAAAAATTATAGCCACAAGGGACAGCTGGAGTTTATACGATGTGacaatttcctttttctgctaCAGATTGGTCGCACCCCTGTAGGG-ATGAAGC-AATTTGTAGCTGTGACAGGAACATTCTATTTTGTAGGAATTTTTACACTTGGAAcgtaattattttattcattgcaGGAATGAATAATATATATGGTTGGAATTCTGGCTTGGGTATAGAATCCTTCCTAATACCTT-TTTAATGTCCGTTTGTGTCTCAAAGAATGTGCTATTCAAAGTGTTACTTCTCAGGGCATTGGGACTTGATTAATTGAATTTTTCCACTTCACTGTTCATTAACTTGATATCCAAATATTTTGAACACTCTTCATATGAAATATGACCTCACTGGGTCTCCAAATtaactttcattattataatcctgttctcttcatttttaatttacttctAATTTATTGTCTTGTGGCaagttcttctttttccattgtgGTCATTGTAAATGGATGGTATCCATTTGTAAATGAACTTTTATTAGGTTTCAGTCTTGTCATTTGGAGGTTCATTTCCTTTATATTCTCATATATGTAACTGGCTGCAATCTTTGATCACTTACTGTTAGTT-TCCATGTTCACTAATTGTAAGAAAAGAAGCAGCAAAGAAAGAACAGGAGGAGATAGGATAATAGAGTCAAACTTCTCATTAAAGAGAGATGTGTTAAGTACCAAGGATTCTATATTCATTCTTACAGTGGAGATTTTCTTATTTCAGAGTATGAAGAAGATTTTGAAGTAGATGACGAGAAACAAGATGAGAAAGCTAATGAAGA--AGGA-CAGGCTGATGATCAAATGAATGGAATATCAAAGTCACCCTCAGAGGATGAAAAAGATAATTTAGGCCCTGAAGAAGAGAGCGCAATCTCGCCACAGAAGGCACCGGATGCTGATGACAGTGAGAAAGATGAGGATGATGGATGCTCTGAAAGTGAATTGGATGAGGACAAGCAAGGCAGGTTGCTTAGCGTATCATGGAATAGGCACAGACACAGGCTGCCGCCCAGCGCACCTCCtacttttcctttatattttaataagataattTGTTAAGGGAATGTGTACAGTGTGGTTATTTAAGCACAGGGTGCTGGTCTGTAAGCTTGTGGTACACACCTGAATTACAGAGTCAGCCcttagttc-tttctctttcttagtttGATGGGAATTTTCAGCAGGGCGTTAGGCAAATTGGGTAGTGACATACCTTTGGTTTGGTTAGATAATTATTCTGCATGTGCCCCAAATTTCCTCTTATGTACagatgtgtgtgcatacacaaacacacacacacgcgcgcgcacacacacacacacacacacaca

a score=50601
s chr3           154740162 6765 + 160039680 [encoded data, 7699 characters]
s HiC_scaffold_1 141732991 6589 + 233722169 [encoded data, 7699 characters]

a score=37726
s chr3           154748128 2444 + 160039680 AAAAACCTTGGTGGTTTATAGATCATTTTTTTCTTT--TATTATGATAACACAGAATGCATTGAAAAAGTGAACAA-------TTTCCCCTAACGTTTGTTAAAGATTTTATATGGTTATTTCCCAATATAGTTCCATGTCAGCTGATAAATTCAGGATATAACAAAAATGTTATCATTTTTTGTTTTTGTTTTTGTAGATGTTAAAACCATGTCATCAATCTCATCTAGAAGTCACCCCTACTCTAGCGAAAGTGAAGACGATTCTACAGAGGTGGGCGGGGAAGCCGACTCTGT---CAGCGAAGAGGGAAGCTCCAGAAGTTCCTCTTCTCAGGATCTGCGGGAAAATGATGACCCAGGAAAACCACACTTTCCAATCGAGAAGTACTTGGAAACTGAGATCGAAGAGCAAGAAATCA------CCGAGGGGCATAACGGACCTTGGTTGACCGAGCTCAGCGGTATGCATGTTACTGAGGGAAAACCAACTATGGGAATCCAAGCTTTATCGGAGAGTGAACACAAGGAGCCTAGGCGGGTGGCTTCTTCAGAGGTGAGGG------CTAAGAGTCAGCT-----------------------------CCAGAAGGAAGCAGGCCTCCCTGGGGTGGAAGAAGAGGGTAAGTACAGCCCATGAGGTGACATGCCGCTGTACCTGTGCATGGAAGCTGATT-TGGTCATTGCTACTGCCAGAGCAATCGG---------CTG-GATGATTCTGGAAGGATTCTTTATTTCCC-TTTCTTCTTGTCAC--------------------AGAATTACACATGTATTTTCAGCTTGCTATTTCCCTTCTATTGCATTTT--AAAAATCACTTCGTCATTCTTAAATAGCTTGTTTCCTATTTTCTGTAAATTCCTTCCTATGATAATTCTATCTCAAGAATCAAATAAAACGCAATGCATGTATGAAGTCAAAGATTTGTCTGGCCTTTTAGAGATTAATACTAACATTGCTCTTTGTTCTGAATCATGTATACATTTGTATGTGCACAGCTCACATGGATGGTGCTCAGCATGTCTTATGCATGGCTGTACATTGGATATGAACTCACTACAGCTCA---------TAAG--------CACTGCCATCTCTGTCCTAGGG------GAAGCAGCTATTTCTTAAGAGGGTC----ACACTGCTGAGAACTGAACAGCCAAGGGCAT-------TCTGCATTGGGTCAGGTGAGGTGGTTCTAGAGTTTCTAGAGACTT-CTATTATTTCCCTGTCACTGTAACTTAGATTTGATA-AAAAATATGAAGATCCTCCAAGATATTTCAATCTTCACTCTTAAATATTTCCTGACTCTGAGCTCTTTCACCA-TCCTGGGGGTTCCAGGGTACATGGGCAGGTCCTGTTTGAAGAGGGACATTTAGGATGCAGGGCAGCATGTCCCCA--GGACCACAGATGCATGGGCAGCCACAGGCTGCTGCCACCTCTCAGAAGCAAGTAGGGGACTGAG---CTGAGTGTGTAGACAGGTGAACTATACCTGCCTGACAGCTGCTTCTCAAAGAGCACCTTGAACTCTACCAGACCTCCAGGTCCTGCCCTTCCCTGGTTGCCCCTCCCCCTGACTATGCCA-CAGCCATTCTTCAGGGTTCCACGATAAATTTGTTTCACATTTTAATATTACAAAGTCCAGCTATTTTTTTAAA---CTTTGAGTCCTATTAATTGCTATACT--TTTTAGATCTTTAAAAGTAGGAATAGTTTGTACTGAACAGTTATCTTCCTGTTGAACTGTTAATGC-AATCTTGTAGTGTATC----ATGTTAGTATAGCCAAAACAAAAGTGTAAGGGAAACTCATACC---AGAACATGTTAAGAAGGGT---------CAACGACGGG--GCTAAGGTCATTACATATAAAATCAgagagagaaaaggaaatggaaaatgatgaaattacattataatctcaagaTCTTTTTAAAAAGGAAAGCAAGGTTTCATGAGGACTGTGTTAAGGCTGGATTCAAGTTTAAAGGTGGGGACACAAGGCAAGGTACTTTGGATGGGTGGGGCACAAGGC----AAAGTGATCTGGAT--TGGTGATCTACACAGGGACATGACCTGCAAGTATGCCCTCAAAAGTAG--GTAGTATAAGCTAAAAATAAGCTATAAAAGATTTTATACTTTTAAATGGTCCAAAAGACCAGAGGGATTTAGTTTCTTAGGCCTATC-----------------------AATCTTGGCCCTCAAATTATTCTACAAAGAGTACTGACATTTCAAAAGGA-TTTGTCTTATGCAAACTAAAATTTCTATTAAAATATTCTTGAAACACTTTGATAAAAATAATTAAAATCTTTGATCTTGGATTTAGTCATTATATTCTGGTATAGTATAAC-----AGATCTAGGAAATTTAGCAAGTTACTAACAAGGAAGGCTGACATGTgggctgaggacacagcttaatagttcagagcttgcccagagcatggccctggatttgagctccagcattggaaaaaCACACA----GATGTGACATTGATTTTTGTCATTA----------TTTTAATTTC----AGAAAACT
s HiC_scaffold_1 141739799 2404 + 233722169 AGAGACTTCCATAGTTCGtagattacatttttctttggtgTGACAAGTACGTGGACTATATTGGAATAGGAGATCAGAACTTGtttaactatatattttttaaag-cttgATATGATTAC-------------------------------------ATACAACAATAATGATGTCacca---attttatcttttatagatACTAGAAGTATTTCATCAACTTCATCTAGAAGTTTCCCATGTTctagtgacagtgaggatgactCTGCAGAACTGGGCAGGGAAGCCCATGCTGAGCACAGCATGGAGGAAGATGCCCGAAGCTCATCTTCTCGGGAGCTGAGTGAAGATGACGAACCAAGAAAATCCCACCTCCGAACCAAAGAATTCTTTGAAACTGAACTGGAAgaccaagaaataagaaaagcagaTGTGGAGACCATACCCCTGCCAACAGAGGAAAGCTGCGGGAACATtctaaaaggagaaatggagagaggaACCCAGGGCATGACAGAGCACTCATCTGAGAAGTCCAGGAAAAATGCTtgtgaggaggaaaaggaaaaggctcAGGGCCAGCTTTGGCGAGGAAGCCCTGCCAAGGCGGAGGCCAGGAGG--GCAGGTGTCCTTGGGGTGGAGAAAGGCGGTAAGTATGGCCGCTGAGTTGACTTGCTGTTGTCCTCATGCATGGAAGCTGattgtggccattttcactgccAAAG---TCGGGAAGCACCACTGTGATGATACCCGGGGGACTCAGTGCTTCCCATTTCTTCCTGTCACGCAATCATACCTGTATGTCAATGATCACACCTGTACGTTCAGCTtgctgttttcctgctgttgcattttaaaaaaattatttgataattcttacat--tctgtttcttattttctgt-aattcCTCCTTGTGGTAATTCTATCTcaagaatcaaataaaatgaaatgcgtGTCTGAATGCAAGGGTATGTTTGGCCTTTTAGCACTTAATGCTAGCAATGCTCTTTGTTATTAGCTATATATGCATTTGTAGACCCATGGC--------ATGGTTCTAAATACATATGATAACTCATTGCCC------------CCTACAACAGCCCAGTCTTCTCTTGAGGTAGGTTTTATTACCATTTCTTTTCTGAGGATGAACAATGAAAATATGGCTTGAAGAAGTCAGGTAAATTGTTAAGTACATAAGGACAGAGGGCTTCTGAAGATTTGCATTCAGGCTGATGAGTTG----CAGAGTTTCTAAGGATTTCCTATTGTATCCATGTAATTGAGATTT-GCTTTGAGATAAAATTGTAAACATCATCTA----ATCTCAAGCTTCATTTTGTGTCCATCTCTGAAAATGAATTATCTCACAATTCCTTGGGGTTCC----CACCTGTGCAGG-------------------------------------GTGCTCCCATTGGA---------CGTAGAAGGCTGAAGAGTGTT-----------AAAATAATCAGGGTGCAGAGTCTCTGA-CATGTGGAAGGCTGG---ATGCCTTTCT------TACTTCTGAAGGA----------------CAGA--------------------------------------GACAGGATCAGTGGTCACTCTTCTTAGttctgagaaaaatgt-tttcaaattttcgtATTATAGAACTCTGCCTGTGATTCAAAAACTTACGAACTCCTCTAATGTCTCTGGTTATTTTAGACCTTTGACAATTGCTATTAACCCACTGGAGTCTACATTTTTCTGGTCCACCATTGATACTAACCttgtactatatttgagccatcATCATCACTAAGATATATGT-TAAGAGAGAGTTCTTcccataaaaaatgtaaaagaagattTGGCACACCAACAAAAGGCAGAGTAGCTATCCATGCATAAAATCAGAGAAGGTACA--AAATGCTAGAGAGAGAGGTTTCG--GTTGGTTAAGGATACCTT-----------GCAAGTTTTCATGAGGAACATGCTTGAGAAGGAC-----TTTAAATAT-CAGATACAA--TTATACAATTTTGA-AGGTGGGATACAGCACAATAAAAGTATTTCAGATAATGGTATATGACA-AGGAGCATAACCTTAAAGTAAGTTATAAAAAATAGCTCTAGTACaagataagaat------------tttttttgtttttaaatggttCCCAAAGCCCTGGAAATTCACTAT-TTAGgcctttcctgaaaaaaaaaatctgttaactAACCTCTTCCCCAGAATTATAAAGGAAAGACTTTCAGC--TTCAAAAGGACTTTGATATATAtgattcaaaattattattatataatattttaaatacttttat-aaagtaaTCCTAATCTTTGATCTTGAATTTCATTGTTAAATTCAAATAGATTATACTGTGTAATCTGTACACAAATTGACcatcttttaattaaaaagataaacgGATAGAAT--GGCTATAACTCAAT-TCTCTCTGTCTGCCTTGTGTCAGGCCTGAAGATTGATCCACAacatagaaaaaacaaagatgGGGAGTTAACACTCAGTATTAACATTGACATTATTATTCTTAATTTACATGAGAAAACT

a score=12518
s chr3           154753752 605 + 160039680 AGACAGAA---------GTGAGGTCAGAGAGGCAGACTTACAGAACACTGTGCAGTACTCATTCTGCCATGGGAAATATGTTCACTGGAAATTTAAGAGTGGACAGATGACATGATCAGAAAGTTTAAGAAGAATGACGCTCACCATAGTAG-GGGGATAGAATTTGCCCTTGAACAGCTGTGGCCTCGAGTTTGTAATTAATTCTGGGTTCT-GTGGGCCATACTTCAATGTCAAAGGTAACGCCAGAACACGTCCACCGTGGAGGCACATGATGTGAGGTGTGAGTTTTGTCGTGGTGAGCTTTTGAGACGATAAATGATTA--TCTATAAAGAATGATCAAGACACAAAGATACTCTCCAAGGTGACTGTGGGCTGAAACTGGACTTCAATATGTCTTCACTCTATTTCCATGAATTTTTGATGATTTAAGGGTT----TTAGATCAAACCATTGGCATCATTTTCATCTGC---TGTTGAG---------CATCTCAGTAGTCTCAGTAGGCTTTAAGGTGGGGACAGTTTATTTTGTTTC---TCTAGCAGAGGATAAGGGGGGAATTGGAAACATCTAAGAAAAAGCAGAAAAATCTGGAGAATACCAGTGCAATCAGTGATATGAGCTCT
s HiC_scaffold_1 141747073 607 + 233722169 AGACAGAATAGTACAATACGAGGTTATAG-GACCAAGTTAGAGGTCACCAAGAGGAAGTTACTCTAACACAACAAGCTTTTCTACTGGAAGGATTTAAGCCAACAAACAGCATGGTCTGAAAGTTTGGGAGAGATTATCCTGGCTACTCTGTTGAGGCCAGCATTTGTCTTTGAACAGCTGTAGCCATGAGTTTGTAATTAATCCTGAGATCTGGTGGATGATGTTTCAGCGTCAAAGGGAGCACAAGAGCATCTTTACTGTGTAGGC--------------------TGTGTCATGGGAAGCTGTTGGGA-GATAACTGATTGGTTATACAAAGGACGATCAA-ACATGGGGATACTTTTCAAGGTGACCG-GAACTTGGAATAAACTTACACATATCTGTACTCTGCCTTTATGGCTCTCTCATTGTCTTaaaactgaagttaaaaaaaatccttggcaaaatttaaaaaggcaaaagttaaaaaaagaacccTTGGCAGGATTCTTAGCATGTTTGAAGACAGGAAGAGTTTGGTTTGTTTCAAAGTAAGCAGAATAGAATGAATAAATTG--AATGTCACTGAGAATACAGGATA----TAAAAGAAACAGTGCATTCTAAGTTATGAGCCTT

a score=52209
s chr3           154755357 3776 + 160039680 [encoded data, 4393 characters]
s HiC_scaffold_1 141751750 4116 + 233722169 [encoded data, 4393 characters]

a score=17286
s chr3           154761226 1058 + 160039680 CACTTTCATCTATCCTGCATGCATCGTTCAGAAGGATGAGTAACACAGTAAATACTCAGAAACC-----CAAGCGACCTTTCAAAGACATAGCAGACCT----------------GGGGATCCTGATTCTCCAGGGAGTCTTACATCAGAACTTGTGAGATACTTCAGCGGTGTTGTAGGAATGTTGTTTATGTTGGACACTGTCTCACACCACAAAGTCCAGTCTCACTCTGTGGTCCTGTTTTGACAAATTCA--TTGATTTCTAAGCATAGATGGCATGTAACCCAACATGTAATACAAATTGGCATCTCTACTAAAATGCCATACCTCAACAATAAAGGTTTTTTTTTTTTGATGATTGAATCTAACCAGAGATGCTTTAACATATTGGGGTGGTATGTGATATATTTGTTATGTCTGGACAATGGCTCCATGTCTCAATGTCTAC-TGAG-----GTAGAGGTAC------------------TCTTGATGTTGTGGGAGGCTATGAGTTTGAAGACATGTAAATACTTTTCTGCTTATTTTGAAATGTTTTCTTTCAAGTATTAATATTTGAAATGAAAG--------TAGGGTATAT-TGTGCAT---TGTAATTGT--------------------------------GAGATAATGTATTGATAATAAGATATAAGGGTAGTGGGGAGTGTTGTGTTTGCTCACTTC-AACATGCCTGATGTTCAATTTTTATATTAATGT-------------GTCCATTACATTTGAAAGCATTTCTTTTCACAATGAAGGAAAGGCATTTTCCAATCATGGTCCATGTT---GTTAACAACATCTTATCAACTGAAG--------GTTTGATATATAACTTTAGTGTCCCCCTTGATGACATATAAAATC------TCATACATAGCCTATAAAATTCTATATTTTATTTTCTGCTTTGTACACATTTATCTAAGTGACCTATTTCTCATATCTCTCTTTTCCTCTCCCTCTCCCTTCCCACCCTGTCTCTTTTTGTGGCACTGAATGGAAATCTAGGGACAGAGGAAAGAGCAGCCATCAGCGCAAATGAGCAACCAGAGCAAGATGCACAAGAGATGCACACACTGAAAGAAGAAGCCATGAAGAAAGATGAATCTTCCCAGCCTGAGGATACTGA
s HiC_scaffold_1 141756085 1096 + 233722169 CACATTTCCTTAGATTACATGGATCATTCAAGAATATATGTTTT-cattaaataataagaaattaatttcaaGC--CTCTTAAAAAATGTA-CTAACCTATATAGGTGATATGTAGTAGACTTGGATTTGCCAGAAAATCATTGATGAGCA-TTATTAAATACTTCAA-----------GAAGGTCATTCATGTTGAAAATTATCCCAGACTACAAAGTCT-GTCTTCCTCTGTGATCCTATTTTGCCAAAGGCAAATCCATTTCTTAATGTCGATGGTAGGTATCCTGACCTGTAATACAAATTGGTGTCTTTAGTAAAGAGTCTTTCTTTGAGCTTCAAAG------TTTTTTGATGACTAAATAAAGATATAGTAGCTTTAAAATGTGGGTGTGATATATGATTCAATTACCCTCTCTGTGATATGATTGTGTTGTTGTATGTTCACATGAGTATCAGCAGAAATATAGTTAGAAAACAGTCATGTCATGGTGCAATAGGAAATGATGGctttaaagaaaattgaata---------ttattttattgcatttttctgtTAGGATT-GTATTTCAAGAGAAAGGAGGATGTTaggatgtatgtatgtatgtgtgtaagtatatggaaagagaaagagacagaaaagagagggagagagaatttattgattttaaagCATCAGG--AATGGAGAGT-TTTCACTTGCTTACTTCTATTCTTTCTGATG-CCTACCTTAATATTAATGTATAATAGCAATACATTCATCAAATGTGAAAGCTTTTGTTTTCATAATGAAAG---GCCCTAATTAAATCATGGAGACTATTATAGTTAGTGGCACCTTAGaacc--aagtttgcattgtttcataCATAATATGCATG-CCTCCTTGATAGCATGTCAATCCATTGTGatgtaaatattacataaaattatatgtaacatctcctttgtt-------ttgattgaagtaacct------------tgtcttttcat----------------------tttatttttgtagcatCAATTAGGAACTTAGTGATGGAGGAAAGGGCAGTGCTCAACTCAAACAAGGAATCCAAGCAAATTACACAAGAAGCACATGCTCTGGAGAAAGCAGAAACAGAAGCTGATACAGGTTCCCAATACCAGGATGCTGA

a score=51851
s chr3           154762785 4024 + 160039680 [encoded data, 4369 characters]
s HiC_scaffold_1 141757130 3973 + 233722169 [encoded data, 4369 characters]

a score=63333
s chr3           154766983 3669 + 160039680 TGGCACAGAGAATAGACAGATCATTTCACCAGGAACGTCAATAC--ATCAAGC----TTACCGCCTGCTTCTTCCCATA--------ATTAGAAACTGCATAGAGTTTGGGGAGGGTGGACTAGAAACTGCTGTTATAGGAAACCCTGGAGGTGATTCTAAAGTGTTCCACAGCCTAAACGCTGCTGAGGTAGGTCATTGGTTACAACAAATCTCATCTTGGTTGCAAAGCAAATCACAGGAGTATTGTCAAGTTCAT--------CTCTGTCTCCGTTCCTTTCCTGATCCACATGTCCTCCTGTGTGGTC-----------ATCTGAAGGAGATGATAGTCACCATAAAAATGATGAAGTCACCCTGCAGCTCACTTCAGT-ATGGTTGTGT-GCAGTGTATTTGGAAGACTTCCCTC------TCCCCACTGAAGAACAAGTCAATGGAATCCAACCACAGCCTCCCTGCCCCATGCTCTGTGTTTGTGACTGAATATCATCTGCTCCACATGTGGTTCCACGTGTTACTCACCCACATTACTGTGCCTT-CTACAGGATTTGCCCCTGGTGTTGC------CCCTCTGCCACAGAGCACTTT--AAACACAGTACTG-ATGAGAAAGATTGGAAACTCCTTAATCACTTTGAAAAGCGAGTTTTGTGCGATGTGTTATATGGAAATTGCATTGGATTATTTTTATACTTAACACCTTCCATCAGCCCAGCCTGTAGTGTAGTTCTACAATCTGCATGTGGGTTTCACTGTGAAATTCAGTGTTGTGATGTTTTGATTGAGTAAATTTTATCTCTGCAAATATTACACCAATAAAATT------ATGCTGAGCAAAACTGATTTCTTCCCCATAGTTTATTCATTATTTAA----------AACAATACATCTGCAGGCTTGACA-----------------AAGAAGAGTTGACTTTTAAGAAGTTTTGTGTTATTTTCTTGTAGAATTTGAATGACAAGAACAGATAAACGAGGG--CAGCCTTATTGGGCGTTACTTTTAAGTGTGTGGGTTTGCAGACTGCCTGCCTTCATCTGCACCTCCTAGATTCCTGGGGTAATGCCAGAGAGGAGAGTTATTCTCACCGCTTTATCGACAAGCATAAACGGAGGTCAATGTAGTTAAGTGCCTGTCTGAAGTTACAGTCAATCTCAGGTCACATAGCTTCTACCTTAGACTAGCTTTGGA--AATACCAGACACTATGTCTAGGAAG----ATTCTAGATTAGGACACTAAGTGTTGGTCTCCACATGTTT--------CTGTTGAAGGAGACAATATCTTACTAATACATCTGCAAACAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtgtTTTCATCCAGTGTTCACCAAAGAACAAGGAGT--TTTACATGGTTCAGG-----AGATGACAGAAGGAAACCTAGGAAGAATTGGGCTTTTCGATTGAATT--TTGAAGAAAGCCTTTCCCGTCACTTTATAAACTTCACTGAGGTAAATTTACAGCATAGGTGAGTTCTCTGCCCTCCTTATGATCAATAAT-TTGCCACTCTTCGTGCCCTTGGAAAATGATTGTTTGAACAAAGAAGAGAAAATCTCTAAGGA-ATGTATTTAGTGGGTAAAATATTTGAACAGGCTCAAGGAC-GCTCCGGAGACGTTGC-TGTGACCTCGGGTAATATTTCCTTCAGTCCTTCT-CTACACTCAATTTTGTCA------TGAAAAAGAAATTCTCTGTCACCATGGTTTACAGAAGAGGCACGAGAG-AATGGGAATAAATAAAGCTGGAACTCCTTAAGAATCACTTCCAAACTAACCTTTCAGAAACCGTTCTACCTAACCCTTCCCTGTTTTC-TTCTTTTGTTCAATTTTCTTTCTCCAGATACACCCAATGATGGGATAACTATGCCCCCACCACAATAACCAGGA-CTCATGTTAAGAGATGAAAGTGAGGGTAGTTGATAAT-CACGttttttttttcttttttcttttctttttttATAATTTCTTCCAGACCGTTAAGACTCTTTATCCATCTGTGTGACCCTTACAGTAATTTGCAATATGGAAGTATACCCATTTTTAA-AACGAAAAGGAGATA--CAGAGAAATTCTAAG--AGACAACCTGCTGCC--GGGCTATCTGTTTCGCAGATGTCTCTTGGTCTTTATTTAGTGCATACTCACAATT-GAAGGTGTAGTAAGGACTCATATATGATGGGAGAAACCTCCTAGGTTATCAGAAGTCTGGGTACTGTGGTAACAGAGATACCTTCAAGCTGTTGTGAAAACACTCCGTGAGGGGAGATGGTTCTTTTCTTGG--TTTATTGCCAAGGCTGG------------ACC------TCATTGTGTTAGAA---TGACCTCAGGGCCAGTCTGTGGTCAAGGCCATC--------CATTATACTTTC--------TTGACCACAGAGGCTGAGTCTTTACCCACTTTCT-ATTTTACTGTGGTTTGCTGGTCATCG-AATGACCCAGTTTAGACAAAGAGATG---------AAATGACATGCACTTCATGAAGgactagctttaatgaatggttaacagaaccttctggaa-------tagctgcaggtattttcttcccacaaaactaattgaggaccagactgaaccttcagctgacactgtattaaaaaa-------tgttttgtagtagtttatttcccagtgaatttagttaaattagccacggggagtttctatgaagtgtgttcctgaacaatgctacaagctccagcatatccttccacttatc------atgtgatatgcataaatgttatgtttttacatctataaaaataaaacaccacgtggataaagtctatgctgagtactctcattctagcagtcaataatgtttattcacagtcacataaactaattaaaaatataagtcactcattctcagagataaaact----ttgaagtttttatgtgtgatgtttattaaaatttataatgcgtgtatgtgatcttgatcaaatgtgaacttctaataattccaatggt-gcttaatctagaagaaa-tttaatacaaaaagttttgtggttgtagggattttttttaaattaatatttaacatatatattagtttagtggagagaaatg-tgtcaggaagagcattaaaaaa----agagaatagagagagatactcagagcacaagattctgtttgcagagtggggtggaaatataagtttaaaagaaagatacaat--attttcctaatgctaaagcaaagcttagacgtgttcctttgacaatagatgTCTGAGTTCAGGGTCCCCAGGAAGTGCTTCAGTGTTTGTGTGTTTGTTGGGACAGGCTTTGACAACAACACTGTGGGCTAAAAGAAAAGCTGGGGTGTGGCACAGCTGCTGCTA------CAGCTGCACACCTCACAGCCACTTAGGGAAGCCACAGGGCAGCAATGGT--GTTGTGGAAGGGA---CAGGCCTCTTGTTTCCCAC----CACAGTC-CAGT---CCCTCTTCAATC-TTGGTTA--GGTGCTTCCTGCAGTTGAGAGCAGCACCCATGAAGGAATTCATATCT-----CACCCCCAGCCCAGGCAGCAAGGGACCAAATGTGTTCACTCTGAGGGGGACTTCACAGTGGAACCCCAAAGTACCCATTGCATAGGTGAAACTGATATTGAGTTGCTATGCGACCTTGA-TGCCATGACTACATGAAGAACAGAGCCATGAGCATATTATCATACAAGGTTCTACTTTATAATGTTT--GAAACCATTTCTACCATTCCTATTTAAATGT--GAACAAATTTAGATGTtg
s HiC_scaffold_1 141762700 3623 + 233722169 TGGACCAGATGTTGGAGTGGTCATTTAATGACGATTATCAGTATCTACCAGAaattgtttctggtttcttcttcTCATACCTGTGAAATTAGAAACTG------------GAAGGGT---CTAACAGCCTGTGATTTCACAAGACCTAGCAGTAATTCTGATGTATACCAAAGTCTGGAAGATGCTCTCAGGGACTAttggtggtactgaggatta--------gTCAAATGAATTGTTGAAgaattgtgaattttattttcctctctttgtcttctctcttttttctgtatctcttttctctttcttaatttcCCTTTTACTGTCTCTAGGAAATGGTAATCATTACAAAACAGACAATTTAACCATAT-GCTCATTTATGTTATGCTTGTATTAGAGTGTATATGCAAAAGTACCTCCAACCATTCTGTCTTGAAGTATTATTCACTGTA---CATCGAGGGTCTCTTT--CATTTGTCTTGT-TCTATAAGTGGATTATATCTACTTAACatctaatttcatttatttggggGCTGTATTACTATGGAGCATTACAGTATTTGTTCCT----TTGCTTCAATCCTAATGTTACAGAGCACTTTGAAAACATGGCACTTTAAGAGAAAGATGGTAAACTTGTTAATCACATTAAAAAGTGATTTTCATACAGTGTGCTAAATGAAAATtgcattgaattatttttatatttaacgcATTTCATCAAAAAGTCTTGTAACATCATCCAACAATCTGCATGTGGGTTTAACTGTGAAATTCAGTGtt-tgatgttttgatt---------ttttctctacAAATACTATGCCTATAAAATTGCTAGTATGATCAGCCAagctgttttttc-----tattttcttcattattaaattaataaataaataatttgtttacAGATATGACGTGTGAATTGCTTTTTTTGGCAAGACTAAGCTTGTAAAATCTTTTGTGTTCCCTTCTTACAAAAGTTACATtataa-aacagacaaaaggaGAATTAATTTTACTGGGCTTACATTTTGATTTGTTATGTATTTATACTGCCTGCATTCATATACATCTCTCACATACATAGGATAATATCATACAGAAAGGTTATTACCACTATTTTATAGATAATT--------AGTTCAGTGCGCTTAAATG---------GACCACAGTCAATGTT--GTCTTCCAATTCCAAATttgaact-tctttaaaataatcacgtatatgacttttaagaagAGATATCGGAGATATTAAGATAATGCGTGAATCGCTACTTGTTTATTGTTTACtggtagaagaaataaaatctcatTCAT--CTCTG----------------------------GTACTTGTGAAAGTGGAG--------------------CAAAGAAACAGAGGTTATTTAaacacttcaagaaaaaaaatagccaaaGGAAATGCA-GAAGAATGAGGATTCT-ACTTGAATTTCTTGGGTTAAAACTTTCCTACGGTTTTATCAACTACTGTGTGG-AAATTTCAAGTATAGATGAGTTCCTTAACCTTTCTATGATCAATAATATTGCCACAATTATTGCCCTTGGAAAATGATTGTTTgaacaaagaaaaggaagccaCCAGGGAGATTCATCTAGTGAGTGAAATTTTCTGCCAGGCTCAAGGACAGCCCAGAAGAGACCGCTTGTGACCTTGGGTAATATTTCCTCCAGGGCTTCTGCTCCATTCAAGtgtgtcattttctttaaaaaaaaatttgctgtCACCATGGCTAACAGAAGAGGTACAGGAGAAAGGGGAATAAATACAGCCAAAACTCTTCAAAAGCCACTCTCAAACTCac--------------tcctcct--tttttccctttgttcattattcctttcattcttccttttaacATCATGCCCAGTGACAGAAAAGCTATGCTCT--TTGAAATAGCTGGGAGCTCACTCTGAGATACAAGGCTGA--GTATTTGAGAATGCATG-----------------------AGACTTTGTAATTCCTTCCAGAAAATCTGGACTGTTT--------------------------------------GGGAATGCTGCTTTTTACTGGGGAAAATGAAATAGCAAGAGGGTTCCCAGGGCAGATAAGCTGGTGCCAAAGTGTGTCTCCTTTTCAAGTGTTTCCTAGTCTTTATTAAATGTCTACTTATAATTCGAGTCTGTGCCGAGGACTGCAACATGATGGGAGAAATCTTCCCGAGT----------TAGGTACAAACATGACGCAGAGAGCTTCCAACTCGTGTG-ATGTGCTCAG-GAGGGAAGATTCAGCTTTCTGTGGGACTCTCTGGAAGGGCTAGTTGGAAGTGCCCACCTCCAAATCACTTTGTTTGGAAGTGGGCTTCAGAGCTGTCTGGTGGAAAAGGCCTTCCCTGTTGTCAGTAAACACCCCTCCTGCATTCATGGCAGAGCCCACGCCGTCATTCACTTGCCAACTTTCCTGTGTCCCTGAGGTCCCCGCGATGGTACGAATGAGAGAAAAGAACAATTTGAACCAGGTAATAAGGGTTGAGAAAAGGAATAACTTTAATTACTGGATGACAAATCCTTCTGGAAGTCAAGGCATCTCCAGTGCTTTGTTTTCAACAAAACTAAATGAGGATCTGATTGCATCATCAGCTCATAAGCcattaaagtcttttttttttttttttgcattttatcagTCTATGATTTTTAGTAAACTCTTCAGAAGAAGTT--CAAAAAGAGCCCTGCTACACCAGAGGAGAAGTCCT------TCCTTCCCCTGTTCTGATTTATATGATTTCTGTAGA-ACCATAGTTttatatctataaaaataaagCTCAGAATGGA--------AT----AGAACTTTCGTTCTAGCAGTA---AATGTTTGCTCACATATATACAcactaattaaaaatagaaacca-ttatctccagaaatgcacttccacttttattttttatgtacaatatttatcaaaatttataatgtatttatGTCATCATGATCAAATATGCATTTCTGGTAATTGCAAAGATCACTCAGTCCAGAGGACATTTTAGCACATAAAGCCTTATGGTcataggca-ttttttaaaatgaaattttaatgcaTATAGTAACTTCGTGGCAAGAAAGGATGACAGGGTGATCAATAAGAGGCTTCGAACTATTAAAAAATACGACGGTAGCA-AAAATTATGTGGGCAAAGCAGAGTGGAAATGGAGGTTTAGGGAAAAATTAACATGAGATTTTCTAATGCTGAAGAAGAGCTTAGTCACACGCTTTGGAAGATGGAGACCCAG--CCAAAGTGTGCACGCAGGAAT--------------TTTCCTGGGGTGGCCTGGGGTGG------TGTGGGGCTGAGGGAAGAATG----ACTGCAGATTAGTTGCTAGACAGGCTGCTGCGCATCCCA-----------GAATGGCCCAGGGCTGGGAGGGCCAAATGCAGGAAGGAGGCCAGGTCTCTTTGTTTCCACAGCACACAGCCACAGGGTATCAGCTGTAATCTTTAGTTAAGGGTGACCCCTTCCCTCAAAATCAATTCTTGTGGAGAAACTTATGTGTGGCAGCACCC----TCCAGGCAGCCAGGGAACGAAGGTGTTTGCTTTGCAGGGTA--TTGGGGTTGATTCC--AAGCACCCACTGCAAAAATGAGAGTGCTATACAATGGTTGTAGCATTTTGATTGCTTTGGATCTA-----GATAGAGATGTAAccattttatcttaaaatgtcCTAATTCAGGAAGGTCTAGAAATTGTATCTGTGTCTTCTATTTAAATATAGGACCAGTTTTAGTTGTTG

a score=23504
s chr3           154773754 1021 + 160039680 ccAAGTTGCCTCTGCATGTTTGATGGTC---TTCTGCTGGC-GTTAAACTTTTCTACCTCTTGTCATTTTATCTAAAGTGTTGCTTTAATTATTG--------TAGTTACCACTAAAGCAGGCCATTATAAAATCGGTGCTTCTGGTGTCTGGAGTCCTGACCA-TAATCT------GCCTGTATAGTTTCTTACTTCTGCTGCTTCTGTTCTCTGGGGCTTCTTAGACGTGTGAGTG----AAGTGAATTAAGCTTAGTCTGCGGATGAT----GCTGTCCTTTATAGTGCAACACTT--AGTAAACCTTTCTGTCACTGTGGGCTCAAAGCTTAATATCCAGTTTCAATGTCAGCTTCCACCTGCCTTCAGCACAACCTTGATTTTCCCTTTCTGTTTATCCATATTACAGCTGACTCACGCTGTCTTTCCCATATTCTACTT--GAACTCTTTATTTTCTA-------------AAAAA-----------------------------------------------------------------------AAAAAGCAAGCCTTTAATATAATACTTATTTTAATAACATCACTTACTTGAAAACTAAGAGAATCAATAAATTT--TCAAGTATTTTTAAGCACAAA-ATATTCATAAATTCAACTTTTCCAAGAGGGAGATTT---TTGATCGTAAAAATGCTGGTAGTGGAGAA-------------GGAATGAAAAACTGAATCTTAAATGAGAGTTTAACACAATTGTCTTAAAATGGTTGTGAAGAGATTTTAACATCTCAATGGTCTTGTTATTGGCATTTAACACAG--------TAATTCTCCTTTTAGTGGCATTTAAAAA-GTGATGCTCCTGTTAGTGCCATCTCTTCTCTTATTTCAACTTCAAGGAAGAGTTCACAGATGGGTCAAGGAAACATTTAAGTTGTTTGAAACTTTAGAGAGCAAAGAAAATAAGTATTCCAGACTGAGAAACCATTTTTCTTCCACCCCTGTTTTTATTATACCTCATCTG--TTGCCTTTGTTAA-------AATGAGATAGGTTTATGGACTCTTGGC-----------------TCCTCTAAGACAA------GGGCTGTCtttgtgctgttgtaacaaaagtct-tagatttgttaattatgccaatgtacttctattt
s HiC_scaffold_1 141769445 1158 + 233722169 CCAAATCTACTGTTCATTTCTGATAGTCATGTTTAGTTGGCTGATATATTTTTCTATGTTGTATCacttcatttgaaatttttctttaaataatacattTGCATAGTAACTGTAGAGATTTTCTATCATGAAA--GGTTATTCT----------------ACCAGTAAACTCTTACAGGTTGTGTAGCTAGTTATTTCCTCTGcttttcattcaagtggtttgtTTCTCATTTGAATGTATGCATCAAATCAATATTAATTTCTGGATAATTTTTGCAGTCTATT-TAATGTACccctttaaataaatatttccttcattGCAGGCTTGAAGTCTAACCTCTAATTTCAATACAAGAATTCTATCAATTTCAAGGCaatcttaatttttcctttgtgtttatccaGGTcactgtgggtt-------ttatttttattttttaataaagagttttttatttcctgcaaGTTTGgcaataaaaattttcaagttgTATTCAGTTTCTACATGCATTTTAATGGAAAACCTTCAAAACACTGAAGCCCTTTATTACAAAAGGCAGACTTTTGAcacaatctttaaaataattacatcatttaattgaaaattaaaataatgaatatttttcttcgCATATACATAGGTATGAGCAGATCTGTAAGTTCAAATTT-CTAAGAATAGGGTTTAGGTTGAGGGTGAAGATACCAGCAATTGAGACTAGATTTTTTTCTGCAACTAAGAATT----CTTAAATGGTAGTTTCACACAATTGTCTTAAAATGGTTGTggagagattttaaaattgcaatgCTGTTGTTAGTGGCATTTAACACTGGAAATCTGTAATACTCTTTTTAGTGCCATTTAAAATTGTAATGCTCTTGTTAGTGATATTTCTTCCCTTATTTCAACTCCACAGCAGAGTTCACAGATGGGTCAAGGAAACAAGT-AGTTGCATGAAACTT--GAGAACAAAGAAGGTAGGCATTCTAGCCTCAGAGGAC----TCACTCCAcgtttcctttttttctactttatttaacTTGTCTACTTCAGGTCATGCAATGAGATGGGCTTACAaagtcttttcaaaatagctgtaccaAGTCCTTTTAACCAGGAGAGTGGACTGGCTTTGTGAT-TTGTAACAAATACCTGGAGACTTCGAATTTATTCCTCCGTATGTCTACCT

a score=31986
s chr3           154775639 823 + 160039680 GTGACAGCAAACGTTCATTTACGAGCTGTTTGCTCTGTGATAAGATCCCTGTTCCATCCAGCAGTGTGGCAGGCAGCCCCTGCGAGTATGCAGAGAACCTGTCATCTTCTTGTTGGAGACCCAGACAATAGCTACTTTAAAATCAATGGTGTTATTTTTGCAGTTTTTAATG-----TTTTACAAATAAAAATAAGGTAACTTAATGTGGTAGGAAAAGAGGACATCATGGGGTCTACAAATG-ATGAGGAATCAGGACTTTCAAGGCTGTAAAGCAGTTTACATCAAATTGTATGCGATTAAAGAAGGGTTGCCGTTTTCAC-AGAAAAGAACTCATGAAGGTTTGCAAG--CTCTTACTGTCTGGTCAAGGTAGCTCTGATTAATTGCATGGTGTGTTTATATCATGATTAATCACAAGTAATATAGCAGTGATATTTGACAGGAAAAATTGCCCACGACGAAGCTTTTCCCTATGATTCTTGAGTTGTATTAATATTTTAAATCAGTTAACAACTTAATGGGTAGAGTAG-GGAAAGCAACAAGCTAATTTAGCCTCCACTAGCATCTCCAA--GCATCCAGTACCTGCTATTCCACATTCTGCCGAATTTTCCATTTGTATTAATAACTTATTACTCCCATTAAACATGCATTTT-CCCTAAAGCTTAATGTTTCTTCAGTGGAGACCAATTAACAGGGACAGTCTCTGC--AGCCAGCCAATTATTTTAATTACTGGAA-----TTTTAAAATTGTGCTTGCTTTGCATAGATTTGACCAGCTGAACTTGTCCAAAGAGTGCATTAATTCCGTGTTCCAAGACATAGAAGATTTTCAG
s HiC_scaffold_1 141771873 820 + 233722169 GTGACAGTTAACATTCAGTCCCCTGCTGTGTACTCTGTAATGAAATCCCCAAGTGACCTAGCAGGGTGACAGGCAGCTG-TATGACTGTGCAGGGAACCAGTCATCTTCTCCTTGGAGGCACTGCTAATAGCTACTTTTAAACATATCTCATTATTTTGATAGTTATTAATGCCACATTTTACA--TACAAATACCATAAATTAGCACCACAAGATA-GATAACTCTCTGGTGTCTAcaaaaacaagaggaaacatgGCTTTTAAGG---TAGAGTGCTTAACATTAGAA-----GAAGATAAATAAGACTCTGTGTTTTAACCAGGTAAGGACACAT------TTGTAAGTACTCCTGTTTGCTGTGGAAGGTGGCTTTGATTAATTGCAATGTATGTTTACATTG-AATTAATCATTTTCCATACGGTAGTAACATTTGacag--aaaactacaaataaagagatatttttctgtaattccagtgctgtattaatattttaaatcaat-aacAGCTTAATGGATAGAGTGGTGAAAAGTAACACACTAATTTCCCTTCCACAAGCAACTTGAACAGTTTCCACTActctctgttttacattttgcaaAATTT-CCATTTGTATTAATAACTTATTACTTCTATTAAACATACATTTTTCCCTAAAGCTTAATGTTTCTTCAGTGAAGACCAATTAACTGGGACAGTCTTCTCTTACCTagtcaattattttaattactagaatttcttttttacaatgtGCTTGCTTTGCATAGATTTGACCTGCCACACTTGCCCAAAGGATGCACTGACTTTGTATTCCAAGAGATGGAAAGATTATAG

a score=74701
s chr3           154780381 5048 + 160039680 [encoded data, 5505 characters]
s HiC_scaffold_1 141776019 4901 + 233722169 [encoded data, 5505 characters]

a score=23948
s chr3           154786031  997 + 160039680 cAGGCCTCTCATTTCTTGAAGCTAGCTGATACTTCATGCCTGTATGAAATTCTAGT------------CTGGCGTTAGTG----TGTTGATTTCATAACAGATGCCATTAATGACATCTTGTTACTAACACTAAGGGGCTGCTCAGGTAAAG---AAAGC-CCAGCCGAGACAAAGGAGACAGGCTAGCTAACCACATGCTTCA----------CGCTTTAATA----------------------AGTCTGTCTGAAAAGAGGTCCGTTCAGTGGAATCCCCGTTAGAATAAGCGGCACATACATCTGAAACCATGTTCTAGACCACCAGAGT--CTTTAATCATAGAATTA-ACAACAGAGGTAACAGGAGA----TAAGGCAGTGAACA-TATTTTAAATAACCCAACCGGAGACGCTCAAACACAAGCCCACATAGTTCCGTCTACGAATACATAAGGATCA---GCCCAGCCATCTACACAGACTTGAACCCCACCCCCAGGCAATTAAGGACTTT--------AAATATCAAACTAAGAACAGTT--CCTCATGCACGGTCTATATCTGCTCCTTGGTACTTCATGCTCTGA--GCAATTGAAAGCCTACCCTGTAGA--AGGGAATTACGTGAGCGCAGAATAAGCAAGACGACTTGAAGAGACCTCAGAGGGCAGAGCATTATAATTGGAAGTGAGCCTGCCATGGATAAAATCACTGCTGTCAGTCTGATGGGAAAACTCCCCTTAGGTGTATGTCAGAC-CTGTCAGTTGCCGTCCTCAAAGCTGCCACTGTTCCGGCGGGAGTGGAGGTGCATCGGGCTCATGGGATCAGACACGTAGCCTGCATCAGAAAAGAAGTTCAGTTATTACTTATTGACCTTCCAGCACTTCTCCCTGCTTTT-GTAACCAGTGGAATCCAGTGCTGCACACAGCTACCAGACTGT-------CCTTCTAGATCCCTGGGAATGAAGACTGGA---TCAGAGTCCTTG----GGGATGCTAAGATTTAAAATGGAAGCATGGAGTTGATGCCAGATGGATATCCATGACTAATGTCCGCTTTGAA--TATGCTG
s HiC_scaffold_1 141780913 1067 + 233722169 CAAATTTCTCTTATCTTGAAAGCAGAAAATATCTTAAGCCTGTGGCAGATTCTGGTATAGAAGATCACTTGGTATCAGTAGGGATGTAAATGACACAAGAG----CATTTATG-----CTGTGCCAGGTAGCAACAGACTGCATAAGTAGAGCACAGAGCACTTGGTATGACATGGAAAGGAAGCTGGATAATCAAGTGCTACATTTCTGCAAGCTTTTTGATATAAAAAGTTATTACTCTTTACCAATACATCTGAATGAAGGTATGCTCAGTGGAAGTcttgctaaaataaa----atacacttctGAATCAATTTTCTATGCAATCAAAGAAACTTTAATCACAGAGCTGGACACTTGAAGCAAAATAATGAGTTTAAGAAACTGAACAATCTTCAAAGGAATCAAACCAATGGTTTTCAAACATAAGTCTACAGGATTCAGACTAGGACACAATAATGTTCAAGTGCCCA-------CCACAGACTGAAGCCCTCTCCCCATGTAATAAGATACATTTGTGTTCCACTTAGAATGCCAGGAACAATTTTCTACACATATATTCTGTCTCAGATTTTTGG-ATTTCATTCTGTAGCCACAAATCCAAGCACAACTTGTATAGTAGGAAATTAAGTCAGACCAGTATAAACAAGCCAATTTAAGGAGAACTTCGAGGGTAAAATATTATAATTGGAAGTGAGCCTGCCATGGTTGGAATCATTGCTGTCAGT-TGTGGGGAAAACTCTCCTTAGGTATATGCCAAATGCTGTCAGCTGCTGTCCTCAAAGCTGCCACTATCCTGGCAAGGAGGAAAATACATCGGGCTCAGGGGATCACGCACACAGCCTGCATCAGAAACAAAATTCAGCTATTCCTTACCTGCCACTAAGGACAGCTTCCTGTTTTTCCTGCCCAGCCTGACCCAGGGCAATGCACAGCTGCCGGGCTGTGTGCGGAGCCTCTGGCT-CCTATGTACAGAGCCTGGACTCTGCGAGTAGCTGTAAAGCGATACcaagaatttaaaaggaaa-agagaggtgaCAGCACCT-GATATATGTGATGGATGTTTGATTTGGAGCCATGCTG

a score=11464
s chr3           154792549 586 + 160039680 tgtacactcatattcacacaattcactcatattgacacacTTTATTAAGCTTGAATATGACTGTAGAGTTATA-AAGACTTCAAGATCAGAGTTAGAGTCTAAATAGCACTTTAAAGTTACCTATCATTTCTGGTTATTATAAAATACAAAAATGTCTCCCTCACTACCAACACGAGTGAGCACCACCCTCCCAGGAGTGATTTCCTTGATG---------TCTGT-TACTTACCATATTTGTCAACAGCTGAATACTGGGCACCTCTGTTCATTTCCTCCAAAGACAGGCCTGGATTAGTGTGTGTCCCGACACTAGAAAACAAATGAGACACAGCTTTACATGG-GGTGCTGGGCTCATGAAATGTCATAAAACACAAAAATTCAGTCACACAGCATAGATC---------CCAAGAAATGTCAACGCGAGGTCAACGAGATTCGGTTTTATAA-CATCTTGTTTGGGATGAGCTCAGGACTGGTGGACTGAGTTAGAACTAAGTCCAGAGTCTTGTTCTCTTCCTCATTGGTTATGGTTGCCAGC-GTGTAACCTGGGGGA---TACACTCTACCTGAGGCTCAGTTTTTATATTTGTGCAATAAGAGA
s HiC_scaffold_1 141784850 576 + 233722169 tatacacacacactcatgca---cacttACA----CACACTTTAGTAGGTTTACAGATAACTCTAG--TTACAGAAGCCTTAAAGACCAGAGTtagaatttgtata----ttttaagacATTCTTTTTTCCTAGATATTACAAAATGCAGAGTTTTCTCCATTGTTATCA-CATGAGTACATAGCACCTTTCTAGGAGTAGTTTCCTTAGTAAATCTAGGCTCTGTCTGCTCACCATCCTTGTCAATGATTGAGTACTGGAGACTCTATGGCATCTCCTCCAAAGACAGCCCTGCAGGGGAACATGGTCCAGCACCAGAAAACTAA----ACACAGAGTCACATGGTAGTGACTTGCTGATACAGTGTC-------------TTTTATTCACACGCTAGAGACCACTCCCCCTCCCAGAAATACCAAAGTGAAACAAAGGCGTTTTTATCTTACAAGTGTATAGTTGCAGAAAAATTCAAACTTATTTGGAGAAAGTGGGATCCAGATGTGAGCTACG-TCTTTTCTACATAGGTTACAATTTCTAGCAGCAGAATTTTGGGCAAATTTCAGCCCAGTTGAGCTCCAGTT----TATTGacacaatgagaaa

a score=20977
s chr3           154793876 2517 + 160039680 TCTTTGCTCAGGACTTAGGCAGTTCTTctcctaattggtctcttggctttcacccctgtcacagagcgatacgttcttctcatattttccatggtgttcatttcaaaatataaagcaggttaagacatctgcctgcttaaacctc-ccagtgggttcctagttcaTCTGGGACACAGTGAAAATG----CTCGGCTGCCTTCAGCAGATTCTGC-----CTCCTCTCC----------AACATATTCTCCTGCTCTCCATAGAAGCCTCTGACCTTCAAGCCCTTCTGGCTCCAACTTGGAGCCTCCACATTGCTGACTTGCCCTCCAGCACTTCTTCCATAGGACCCAGATCCTTATTTGCAGAACATCTGCCTTGCCTTCCCCCACAGCAGGCTC--TTCTGTCATGAAAACTTCATTTCATTCGCTGCTTTCTCAGCCTCTTCTCCTCTGATGGCTATTCCAAAGTAGCCTGTCTTCTGGTGTGGTCATTCCACTTCATGATGGCATCATTTATTTTGGAACGTGTTTGCTACCTGCTTA---TGTATACACTGACAATTACATTTTAATGTACAATaaagcagg--------------gactaattt-------cttattccctgctattccctcaactctcagagtcact-ttggcacatagaaggagcccaaccaatagtgttgaagaattgaatAAATGATCGAATTCTTAAATGATGCG-------TGCCACTCAATCCT-TACTCCACTAGGTACATCTGTAGCAAAATCCT----TAGCTCAGCCTG-CTCCCACTTGCCCTGGGTCCTGTAGGTCAGAGGCTGAGCATTCCAAGCATCTGT-ATTTGCTTTCTTTGAGTCTTATAGTCTACTGTTCTTCACAAGGCCCCCTGGCACCACATCGACACAAGTTTGGCCATAGTAACTGACATTAGATTTTTGAATCAGTCCCAAGAATTCTGTTCCTCATGACTGTGGCTAAACTGCTCGCCCTGCTTGCATGTGTATTTGACATCTCATTTGCCCCTGAGAGGAAGCAGGGTGTGTTATGGCTGAGAGTGGGCATTCTATATGTTTAGAGTAGGGATGGGCATTCTATATGTTATGCCTAGGAGTGAACATTCTATATGTTATAGCAGGGAATGGACATTCTACATATTGGGGCTAGGGATGGGCATTCAATATGTATGGTTAGAAATGGGCATTCTTTGTTATGACTAGGAGTGGACATTCTATATGTTATGGTAAGGGATGGGCATTCTATATCCTATAGTTTAGTATGAGACTTCTGTGTGTTATGGCTAGGAGTGAGCATTCTATATGTTATGGCTAGGAGAGGGCATTCTATATATTATGCCTAGGGATGGGAATTCTAAGATGGACTGCTGGAGTAGCATTATGTGTCTTTTGCTGGTTACT-------CTGTGACAA-----TAACTGTCTTACGACTAGGTCATGCATCTGCAAAGAGGGAGGC-AGAGAAGACT--TGAATTAGGGGGTTTACTGTGAGAATTAAA----------------AGCTCTT----CCGTGCTAGAGTTTAGGAACTAGTCAGTAAAAATTGCTTGTGATTGGTATCCTTCCAGGTC-------AGTC----TGCTCTGTGAAGACCCCTGGAGA-----------------TGGCCTCTACCTCTCCCACACCTTCAGCACTCCACGCTGTA------ATCACAGTGCTGCCGTGATTCTGCTCTGATATAAAATTGCCTGTATTTGTATACTATTGAACTCAGCTACATAGAA------TGGGACCAAGACC--CTGTTCAATATTGCTGGACTCTCA-GTGACTTCTTCAG-ATTTTACCATCAAAATGAAATCAA----GTGTTAAATAAAATCAAGTGCTTCAAAGTCGTAGCTTTAGAGAAGTAAGAGTT--CTGAAAGCTAACATCAGCTCATACGTA------------ACTGCCTTAAAAATAACAGCATCGCTAGGTTCTTTTCCTTAAGCTGCAAAGAA--------AGTTTCTCAGAGGAAGGGAATGATT-----GAAGAGAGAATTCTATTGATTCAAAGTATGACAGAGTC--ACCTCAATCAACAGTAAACGGTAAACAGCACACAATTCTGG-CTACAGACTGTTG----ATTTACGTTTT-----AAATTTTACTTTCTTGTTTCAGTATGTCCATGTGGTCTTGTTGGGACTGTAGCACCATTTAA----------GCAATGGGCTTTGTGCAGTAGTCTTGGCAACAAGACAGTAATGGGGAATAAATACTTTATCACC-AAATGGCTATCTGATTTCCTGTGAATAAAAGCCTATCTCTAGGATGCCCTGGGTGTTCAGTGTCTTAATGCAGTTCATGCCAGGGAACTTAACCTTC---TCTAGGAGATGTCACACCCACTGGCATTGGACTCTTCTCAGATGACAGACAGATGGAAGCCAATCATACTCAAGCCAAACAAA--AGAAGAAACTAGACCCTGATCAACAAAGCTAGCTCTTCACACCCATGCACCCTCGACCTTCAGCAAGGTTTCACAGGCGTTCA--GTTTAATTTGGGTATCAGGACTCAGGACTCAGCTGAAGTAGTGACTACAAAAACATGGCTGGTCCAG--CGATGCAGCGACCACA--AAGCCAATGCCTGTGTCTGTGAGCTCATTGCAGGTAAG
s HiC_scaffold_1 141786945 2410 + 233722169 TCCTTG-TCTGGACTCTGTCA-TTTGTCTCTTAGTGGATCTCCctgctttcattcttttccctATGTAGCCTGTTCTTTATAGATCACCCAGGGtaatcttttaaaagtatatggTGGGAGAAGTCATTTACCTACTTAAAGTGCTCCAATAGCTTCAGAGGTTACTTAGAGTAAAATGCAGATGAGTGCATAGGTGCTCTCTCCACCTTCAACTCATGCTTTTCTCCGTGTTTATGAAACACTTTTTCTAGCATCCTCTCTGTTCCTAGGACCCCCAAATTCTTTC----CCGGCTCAGAGATTTTGTGTTGTCAACTCTTCCTGGAACGTTCTTCTTAAGGAGCCCACATCTGGCTGTGCTGAACCCTTGACCTGCCTTCAAATAGAAGTGGCTCCGTGTCATCCTTCAGGTCTCAGTTGAAATGTCACTTTCTCATGGATGCTTTGGCTGACCACCATCCGGACATGCCCACTCTGT----------ATCACATTGCATCATGGTACTTCTTTCATAGCGACATGAAGTCATCttgcttaatttatttatact--taacTGTAGTCTT-TGTACAAAGCAGCATGTGTGGTTTTGTCAAGTGTGATTTTGTCTCTCTTCTTCCCTGCTATATGCTTTATATGCAGAACAGTTCTTAATACATAGGGGAAGCCCAGTGCACTGTGTTCAAGGAGTTAATTAATTAACAGTTCCCTAAATGATGCCACCCCCCCATCACTCAATCCTCTGGTCTATGAGCTAGTAGTGTAAAACAATCTTGCCACAGCTCTCCCTGGTTTCCTCTTGC---AAATCCT-CAGGTCA-------ACCTTTTAAAAGCTCTGCcatctactctgcttgtgttctGGAATACTTTGTTCTCTGCAATTTccc-----------------------tgtctat-----ctatctatctatctatctatctatcta------tctatctatcat--------cta----------------tctatctatcttctatcTATTTTTTCCTCCCAAATTCAAGCCACGTG------------GATTGGATTTTCCAGACATCTC-------------------------------------TGAACATTCTCTTCCTCATGACCGCAACTGAGCTAACATCACTTC-----------------TTCAGCGTGC-TGGTT------GAGCTTACTTACCCCAGGCAGGAGGTAA-----CTTGGTGTTACAGTGAAGAATAAACATGCTA--------------GCACCAGACTCC------------------GTGAGC------------------------------------------------------------------------------TAATTTTCTGGGTCCACTGTTTACTACTTCCTGACCTTTGACAAATTATTAGCTGTTCTACATCTCAGTTATGCAACCATAAAAAAGCAATTGAAACAGGACTAATGGGTTGTAAGGTTAATTATAAGAATTAAAGAGTCTGTAAATTTAAAGCACTTTGAacagtgctggcattctgtcaACACTTAACAAGGGTTACGTGCGTTTATTATCCTTCAAGGTTGACTCAAAGTCATCATTTTCTCTGAAGCCCTCTTGAAAATCTCCCCAGTCAGAACTGACATATTCCTGCTCAGGACCCTGAACTTACCCTGTCATAGTGTAAATCCCAGCCCACCTTGGAGTAGATTCTAGAATAA-----TCTGTATTTGTGTGCTAGTGAGTCCCATCACATAGAGAAGTCTTGTAAATCAGACTTGCTGTCTAATTTTA---GATCTTCATATGGCTTAGTCAGTACTTTATAA--atagttaaattaaaaatgtgttaaattcaacaaaattattcaaaaatgttcATTTAGAAAAGTCAGATTTTTCTGAAAGTTAACGTCAGTTCACACTGACTAATTCACTTTGTTACCTTCAAAGGGATTGCCTCTTTGGACTTACTGCCTTAAGGTGTAAATAAGAACACTAATTTTTTCAG--GACAGCAATGTTTaccaaggagaaaaaaag-taCTAGCTTCAAGCCAGACATGGTATGATCTCAATCAGCATGAAATAGCAAACCATATTCATTTCTGATCAAGAGACTGTCAcgcaatacatattttttttcaaaataaactttctccTACTGATG----CATATAAACACATTAGcactctaatttcttttaatttcttctgtactGTGTGCTATACACAGTAGTCTTGGTAACaaggagaaaacaggaaataaatattttatcatttaaatggCTATCTGGTTTCCTAGGAATAAAAAGCCATTGTCACACTGCCCTGTGTGTTCCCTTGCTGAACGCAACTCACTCCAGGAAATGTAACCTTCCTGCCCATGAGATGCCACACAT-CTGG-----------TCTAGTATAACAAACAGATGGAAGCTAAGCATACCCAggtcaaacaaaacagaggaaaCCTGACCCTGATGGGTGGAAATAGGTGTTCTCAGGCAGCCA-----GACTTCTCCACATGTTCCACAGAAACCCAGGGTGTAAGAGACACACCGGGACCTCTG--TTTGCTGAAGTTGTGGGCAGAAACATAAGGCTCATTCAGGAGGGTGCATCTGCCCCATGAATTTAATGAAAGTAAATGTGAACTCATGGCAGGTAAG

a score=63903
s chr3           154798492 3957 + 160039680 [encoded data, 4439 characters]
s HiC_scaffold_1 141790659 3989 + 233722169 [encoded data, 4439 characters]

a score=29442
s chr3           154803613 1094 + 160039680 CCTACACA-GAGAAAGATGATGTTTAGCGAGCCTAACTAATTTTCTCAGGAGT-TATAGCGTATCAGCGATAGAACTTGAATTTGATCCCAGGGCCATATGAGCCCAAGCCTGTCAGCCATTTCTTTAGACCATGGGCGGTTGCACATATACATAAATAAAAGTCATAAGGCCAATTTTATCAATGAAAGATAAAACCAGCAAGTAGCTA--AGCATGCACGGAGTCGTCCATCTCTTCTGCTTCTGGATGGAGGGAAGTTGAAAGTCCATCTTTATTGGGTTTATTTCCCTGGGTTCCTTT-GTGTAAGTTCTGATCTCTGCAAGAAATTCCATGTTTCTTTGTTCTTTATGACAGGCCAGTCTGAACGAGAAGGGCTTGAAACTCCCTAAACTCTTTGAACAAGAGGAACATTGATCTTCACAAATCATTTGAAACACCCTAAGGGAGGTTAAAAATTACAAG---------CATTGTATGTTTTTG---------TTTTTGTTTTAAGTGA-AGGTACACCAAACCACTGGGCCC--TGCTGCCTTACTGCACGCTAGCAGAACTTTGCTCGTCCCTCTG---TGCATTCTGTGCTGTCAGATCCTGGATAACAGAGTAGCACGGTATTG-CCAGGATCCTTGTCCTCCTG---ATGTTCTCTGCAGACGTGTAGGGTTGATAATCCCATCCCGTTTG-----------ATGTTCTGTGACATCTCTTTGAATCCTGGGCAACCCAGGGCTTGACATTTCCTGTTGATAC-ACCACTGCTC---TAGCCTTCTGTGTTGGTGGGAACATGACTAGGTTTGGCAAGAAGTGCTTAGTGG-CTTTTGCACAGCTTGATCGTGATGGCAACTT-----TCAGAGTGA---AGCCTTGATATTTTGCACAGCAGGAAGCCTACCCCT---TCAGAGCAGCAACTACACCTGCATACCTGGTGTCTG----GGTCCTAGC--ATGGAGCTCACAT--------GCTTAC-----------AAAATGACTTCAGGCGCACTGAGCTTCTGGTCATCTCTCCTGCCTCCTCTCTCAGCATAATTTCTGTGTGTAGGTC--AAACAGTAGATTAGGATTACTGTGTCAATTCAGACTAAACTGGGTTTTCAATTCCACCAACTCCACAGTCTATGGGGTACCTTCC
s HiC_scaffold_1 141797598 1150 + 233722169 cctatACATGAGAAGTTTAAGGTTTAGAGATCTCTACTAGCTTGCCCAATGTTACACAGTTTATAAGGGATAAAACTTGAATTTGAACTCAATTCCAAGTGAGCCCAAGC-TCTTAACCACTTCTCCATACTAATAGCCACTGGGTggttacataaataaaaatcaaaaagccaATTTTATCGACAGAAGATAAAAGCAGCAACTAGATAGGAGCCTAcagagaaatacatattttttccccTGTTGGATTGAGGAGGGTTCAAAGGCCATCTTTGTTGATTTTAGATCTCTGAGCTCCTTTTGTGTGAGTTGAGATCTCTGCCAGAAATTCCATGTTCCTTTGTTCTATACAACAGCCCAGTCAGAACGAGAAGGTTTTAAAACTCTCTGAACTCTTTGAACATGCAGAACATTGATCTTCAGAAACTTTGTGAAACACCCTTAGGAAGTTACAAAATTACAAGCAacgtttccattttatttatttatttatttattttttgtattaagCGAGGGGTGTACCAAACGTCTGGGACCTTTGCTTCATCGTCGCGAAGCACCAAAGCTTTCCT--TCCCTCCGCTCTGTCTTGCTAGCTGTcagaatctgaaaaacaaaacggTGTGATGTTGCCCAGGTGCCTTGTCTTGTCGCACAGCTCCTCTCCTGTTG-GTAACGTGGGC--TCCTACCTGCTCTGCCACGAGGTGCCTGATCCGAGGTGTCTTCTT-ATCCCGGGGTGACCCAGGGTTTGACATTTCCTGCTGAGCTGACCACTGCTCCTGTAG----CTGTG-TGGCAGGAACATGAGTA--CATGCTAAGAAATGCTCCGCGGCCTTCTGCACAGCTAGACCTCCAAGGTCCCTTCTGTATCAGTGTTATTCAGCCTTG-CAAGTGGCACCGAAGGACACTTCTGCATGACGCAAGACTGGAGCCATGCTTGGTTA-TTGATCTCTACTGTAGCCCTGGCAGACAGGGCTTACATACTGCACCACttacctattttaaaaaagatggatTTGCATGGGCTGAGCCCCTGGTCGTCTCTCTGGCCTCATTTCTCAGCTCCAGTACTCTGTAAGGGCTGGAAATAGAGGGTCTTGGTCATCGTG-------------GGCCAAGTTTCCAGTCATAACACCTCCACA--CTACCTGCTGCCTTCC

a score=36531
s chr3           154806008 1597 + 160039680 ACAGAAATCACATGCAGAACTC-------CTTGCCTTTGTGCATACTTAGGATTCACAAACACTTCAAATACGATCAAGTATG-------ATGTGTGAGACGGTTTGAAATCATAACATTGATTCCACCTAGTATTCCTTCATTTTCCCAGCAGAAATGGGGCAGGGTGTTGTATTTAAAATCATTTTTACCATGAGAGAACTGTGGCGAGGATGGAGCATGCCACGTGCCTAAGATTACCTATCTTAAGTTGAGACAGGAGGGAAACTCCA-------------CTGTGATCCACTGTTGAGAGGCTCTATGGGTTGCTAGGCTA-CAGGAAGCCTTGTGAAGGGTGGTAGGGGAGGCCTGGGATCCTTGTAAC-CATGATTAATCTGTGTCTTCAGATTCTAGT------------CTGGAAGTCAGACATTTGAACCTCTGGATGTGGGTTTCCACAATCTCTGCATGGTGCAGGCTTGTATTTGATGTGTCTG-AGCTTAGTCCTACATTCCCTCTACAGGCAGTTTCTCCCAAAGCCAGGGACTTAGGCAAAATGAGCACTGGTTCAGAATCTGGGAGAA----TAACTTCAGTCTATACTTGGGCCAT-----CAATACCCCAATAGGAAG------------------------------------------------------------------------------------CGGACAGTGCTGATTCTA----------------TC-------------------AGGCAA-----------------CTCTGTGAGATGC-AGCTATTCCAGGATGCATCT--ATACAGGGTGGAGGGAGAA----GTCACAAATCTCTTACTGTAGACA--TCCCCAGCCACCTCTCTGGAAGCGTACCTCTCAGT--GTCTTTTAATGTGAGACCCGGATGTGAAAGGAAGTGGTATCTGGGGACTGG-TAATCGGAGCTGTAGCATGTTCCCATAGGAACGCTAGGC-CTGAGCTTCCTTCCTTTGTTTATGCAGGCTTGCAGCAGCTGCCGCCTTTGGATTCTGGCTTCT-GCAAGCGGAGGCAGCAGATCCAAGCACAGAACCACCCTGACGGTCTCTCTTTGAAGCTCTTGAGTCCCCAGCCATCTATTTGTGTCTGGCTCTGATTCATCATGGGCCTGAATGCTTCACCTGCTATATCAAGTTTCCAATAGAGCTTGAAACAGATTTCAT---------AAAAAAGGAACAAATACTGGCCAGCAAATCTCAGCGTGGGAGATTTG---CAGGGGGAAGGGTAGGAAATGAGGCTGATGGTAATTATTTGCGGTCTTCGATTACTGGCGGATATTGATATACATATGTCCTTCATTTTATTTTATTTTTGTTCTACTAGGGTATCAGCCACCTGCTTGGAAGATTAACAACGGCTGGACGCAGACCTAG----------GGCTTTGGAGGAGTTATTATTCATATCAGAAATGGCATTATGAATAGGCTAGCATGGATTTTAAAGAAATTCGTACTTATTCTCTGAGATAAAAGCACTTCACGTTCAAGCAGAAAGAGCCAAAGACATAGACTCACTCAGTAG----CCATCTATTCCTTCAGCGGCGCTTCTG-TTCCCTTATTATAGAATTCATCATGCTTTGCCGAAATGGCCTGCTCAC--ACTGTGAGGACAGATACTGGGTCCATCCTGCTGATCCCTT-------GGCCTTAAAAACATTCGAATTTCAGCAATAACTTTCTAGACAAAAGAAGGAAAAGGGGAAGGGAAGAAGGGATTGAAGAGATGGTAGCACGTG
s HiC_scaffold_1 141800607 1792 + 233722169 ACAGACCTCACACCCACATCTCAGTGATACATGCCTTTGCACTGTCAGAAGTTTCCTAAAAATAACAGTTGGGATAATGTCTACACAAGCATTTTTGAAACAAC---AGAACATAACGTTTATTTCATATGTACTTCCTTACTTAGTCTTCCCCAAAGCGGGCagggattattatttt------ttttttccgggAGGAAACTGAAGGGCAGACAGGTCAAATAATTTGCCCGAGGTCATCTGGCTC---ttaagagagaagagaaagatcagATGGGGACCGTGCTGGGACTCCCTGTTTTACCGCTCAGTGGA--GCCGTCCTAGCAGAGAAAACTGTGATCGGCTGCTCTGAGTACACGCGGTTCTTCTCTCTCATTAGTAATCTGGATTCTCAATTTCCAGTGGACAATTGGGCTTAGAATTCAGGCTTCTGGTC----------AGGAACCCAAAACTTCAG-ATCATGCAGTGTTGGGTTTTCTGTGTTCACAGTCTCATCttcaattccctgtacaaa-gTTTTCCACTAAAGCCAGGCGCTGAGATAAAAAGACAACTAATTTCAAACctaagaaaaacattaattttaatctCGATTTGAGTCACATAGACTATATTCCAATCACAAAAACATTATCTGGAACTGCTTCTTTGGATgttgcatgcacgcacacacacacacacacacacacacacacacacatacacaaacacacacattttagATACTAAAAACAATAACCACTTTCTGGAGTATatgaacaaaaaagacaaattctctctttttcatgttttgaaagATGTGAAATCCCTCAGGACTCAGCCTGCTGTATGGTGTAGGGAGAACTTGATCATGCAGCTCCTATTGCAAATAGCCCCCCAGCTCCATCCC-AGAAATGTGCCTCTTGGTCCACCTTTTAATGTGAGACACTGAGCTAAGAGGAAACTGCACCTGGGGACTGAATAATCAGAACTGCTGCAGGTTCCCACAGGAACGCTAGGCACTGCCTCTGCTTGCTTTATTTATGCACATTTGCGGCTACTGCCTCCTTTGGAATCTGACTCTTAGCAAGTGCAAGCCACAGCTCCAAGAGCAGAACTGCCCTAAATGTCTCTCTTTGAAGTCTCTGAGTCCACAGCCTTCTCCTTGTGCCTGGCCCTAATTCTCCATGGGCCT-----------CTGGTTTACTGAGTTTCCAGTAAGACCtgaaccacattttttttttttttaaacaaatgaatattACCTGGCCAGTGAATCTCAGCATGGGT--TTTGGAAAAGTGAGGAGGGTAGGAAATAAATTCCATGGCAATCATTTCCTACCAGCGGTGAAGCGAGGGATCTGATGCACACATCTCTCTTGTTTGGATTT-CTGTTGCTCTACCTGGGTCTCAGCTACCTGCTTAGAAGATTAACAGCAGTTGGATGTAGAGCCAGAATTACTCTGGGCTTTGCAGGAGTTACGCTTTGTAGCAGAAATGTCATTATGAATAGACGAGGATAGGTTTTAGAGAAATTCTGCTTTACTCTCAGGAATCAAAACACTTAATATTTAAGTGGAAATAGCTAGAAATATTCACTCATCCATTTATTCCTCATATATTCATCCATCAGAGTTTCTGCCTCTCTTATCATAAAATTTATCATGC-TTGCTGAAATGGCCTGTTTGCCAATTCTGAGGCCGGGGACTAAGTCCATCTTGCTGATTCCTCTGTTCTGTGTCTGGAGTACAGCAGGTTTTTAGTAATCATTTGGTAGAcataggaaggaggaaagaaaatgaaaatggattcATGGAAATGTCAACATTTG

a score=18648
s chr3           154808737 661 + 160039680 GCCTATTCTTGTAGCTTGCTCTG-TAAACCCTCCTGCCACTCCCTGGACATGCCT-GTGCCC---CTAGCGCTGTGCCTTGTTCACCTGTGAGCGCAGGTGCTTA--ATGTGTGTCAGTGAGGGGTAGATGCCAGAAAATTCTTGACAGTAATTAAGCATCCTGGGGAAGAAGCTCTGTGTG-AATTGGATTGTGTGAAAATTCTAATGGAAGTTAATGAGGCCTTGACTTACTTTCTGACCTGGGAAAGTAGGATAATTCAG--ATCTTTTATTCCCATCTGTAAAATGGGATTAATGTTACTAACCTCCTTAAAAGGAATTATGTCTGCAGATAGA--GGACACATTAAAAATTACCCACAGGTATAGAAAACTATTTCTATGACAGATAATGAGTAACGCCTGCCAGATGAGGGGCAGAAGGGGAGGCAGGCTATTAATAATTTCCACCATAAAGAACCG-AAACAATTGTCGTTGTA----GTTTTGAATGGCTATC-GTGCTTTCTTG-----CTACTCATGGGGCCACATGCAGCCAATATCATCTTCTTGGCCTCT-----TGTTG--AATTTTGACTGAGG------TTTATGAAG-AAATGGTATCAATTGTAGACTTAAAAGCAATT--TTATTTTGGAGAACTGAATATAT-GGCCACTTTATATA-GCAGAATATAGTGACCCTGAATAA
s HiC_scaffold_1 141805755 683 + 233722169 GTTTGTTCTTCTAGTGAACCCTAACTGATCCACCCACTACTTCCTGTGGAGACCTTGTGCCAGTGATGGCTCTGTGCCTTGCT-ATATATGGGATCAACTGTTTGTCACATGCATCAGTAAAGAGCGAATGCCAGAAAATGCTTGATGCTAATTAAGTGCCCCAGGGAAGGAGCATTGTTTGAAAttggataaaagaaaaattctaatgaATGTTAATGAGGCATTGATTTACTACCTGACCTGAGAAAATATGATAAACCAATTGTCTTTtattcccatctgtaaaatgggatgaaTGCTATTAACCTTCTCTAAAAGAATTACCCCTGCCGATACATTGGACAC---AGAGAGTGCCCACAGGTGTTGAGAATAAGTCCTGTGACA-ATAATGCACAGCATCTGCCAAAATAGG------------GGCGAGCTGTCAATAACCCCCATTA-ACTGCACTGCAGACAAtggtgcttttgttttgttttgaaatgtcaTCAGTGTTTCCTTGTAATTCTGCACATGAGAGCACGTGCTGCAGATATT-TCTTTTAGACTTCTATCACAGCTGGAGAGCCTGACAGGGGAAGGACTTTCTGGAGAAAATATTGTCTATTGTGTGCTTAATAGTTGCTGCTAATTTTGGAGAGCTGGCAACAGAGAACATTTTATCTATGCAGACTCTTCTGACACTGGACAA

a score=41332
s chr3           154810291 1882 + 160039680 TCTACACAGGATTTCCATTTCTGATGACTGATGGACAGAAAAGAGAAGGGCGGCAGCTCTATTAGGATGAGCCCTCT-GTTGATGCTCCTCCTGTTCGTCAGTTCACCCTCTCCACAGCAAGCACTTCAGCACAGGTCCAAATACAACCAGTAGCTGCT--TGCAAGTGCCATGGGGCCCTTCCAGTGTGTCAGCTTATGGACCTCTGACAAATGCAGAGCGTTGCGGAA--AGGCTTTAAAGCATTTGCCCCTGGCCGTTCGGTCAGAATGAATGCATTTATTAGCTGGTATCTCATCCTTGGTGGCAAAAATAAACAAGGACTAAAATAATCTGGTCATAAATGCAC-------------------TCTGCTCCATGACTCATGCAGAAAGCTGCTATTCTGC-TGTGTCTGGGTGAGTCTGTCTATGTAAATGTCCAGAAGTCTTTGAGA----AAACACGGTTATCATTAACTGCCTGACAGCCTTTCCCAGGGAGAGC-AGGCAGGCACTGCTGCACCAA-GATAACTTTATTTAATTAGTTGCTAGAAGATTATTTACTTGCTTCA-TAAAACAATGGCCTGTCAGTAAGAGACTCTTCCTGCTTTTGCAGATGTGTCTGCAGCTCCTGAAGTCTTTACAGATGCATCTGAAATAAGCTTTCAGGTGTCCTTTATATGAGCATTTGACAGGATAATAGAATTAGATTTGCTGAATTTCACTAAACTCTGAAGTAATATGTCACCAGCTTCGCTTACTTTTCAAAAAATATTTCTCTCTGGTAATGCTCATCAATCTAGCTCTTCAAACCCTAAACAGGAGCCTCTGAAACAAA-AGGATGGCTCCATCCGTTAGGCAACTGACAGGAAGTTAAATAGCGAACCGTCCTGGGTGTAGTGACAAAGGCACTGGATAAAAGCAGGCTTGCTTAGATCTGGAG----AGAGAAAGGGGCGAGGGGAG--------------GCAAAGAT-----GACAGATAC---AGAATGCATGGCTCACCACACAGGTGGGGAACTGTGAGGATGGTCTCGTTGTGCCCCTGTGCAGAGGAGCATCCGTTGGCTCTCAGCAATGGCCAGTGTCC---TGCCTTCACC-TTGCATGCACTCGCTCTAGTCTGGGTGTTTATTTCTCTGGATTAAAGGGTTTTATTCACTGAGAACGATGATGCGGCCTTAGTGTGTTTCTGAGTCCTAGGGTGACAGCTCAAG-----------GAGTGAGCAAATCAGAATGCCCTGCATTCACAATCAAGCGGCTCCTCCTCCCAGGCACCTCTGCTGTGATCTCACGCCTGTCAGATTTGTCAGTGCACACTGAGCCAGCACAGCTTTCTGTTGATTCCGACAACAAAACTCTTTGATGAAGGATTTGTTAAGCGTCCAAAAGCTAGCATCAACTTTAAAGTGCCAACTGTGACTCCTTCAT--------GTGTCATGAGGAATCTCAGTGAGGTGGCAAAACGCATCTTGGTTTTC-CTGTGGTAAGCACTTTACCTGGATCAGAGGCAGAGAGGCTGCTCGAGGTACTC--ACCACCCCCACTCTGAGGTTAGAAACTTTGGTGGGAAGCTCTTGTGGGGTCAGGCACACTGCACTGCAGGGAACATACACCTTGATGAAGGCCGTAGGAGGAAACTGTTCCCAGGGAGGTAAG----TTGCACAGAGGTTGTGCTGTGAGCGGCAGGTGCTCGCTCGTTCCTGCATTCAGTGAGCCCTGGATGAGAAGCCGCCATCTGACAGGTGTTATTCTAGGCACTAAAG--GATGAAGGCAGATGGACTGTATGGGCGAGAGATGCTG----GGAAGCAGAGACACATATGGCTAAGGTGCTGGACAGCGATTTCTGTAGGTCCCTGATTCATCACGCACCTTCCACTGTGGAAATCAGCAAACGACAGGCTGTAAAAAC--TGGGGAAGGTATTttccttcctt
s HiC_scaffold_1 141809179 1822 + 233722169 TCCACTGAGAATTTTTTCCTTCAATGAGTGATTAATAGCAGAAAAACAATAGcaatttttattaacattaatCTTCCCATCGATATTCCTCTTACATTTCAACTCTTCCACTTAATAGTGACTCTTTCCACACAAAT----GTACAGTC--TCACTATTGCTGAAAGCACCAGGAAGCCCTCCCTGTTTGTCAGTTTGTGAACCTGTGGCACCCAGATTGGCTTGCGGAAGAAAGCCTTAAAGCTCCCACTCCTGGCATGTTGGTCAGAATG----CCTTTATTACATTATATCTTACACTTGATCATAAAAGTAAACACAGGCATGAATGACCCAGACTTAAATGTACAAAATCTCCATTTCAGGACTATGTTCTATGATTCATAAAGAAAAGCATTGGTGTGAGTGTGCTTGGG-AAATCTGGGCATGCGAACTTTGAAAAGCCTTTGAAAGGAAAAACACAGTTATCACTTACTGCTTGACAACCTTGCCAAGGGAGACCGAGGCAGGCTGTGTGTCACCAAAGACAACTTCACTTAATTAGTTGT---ACGATTATTTACTCCCTTTAGTAAAACAATGGTCTGTCAG-ACCAGATGCATCTGAGTTTTGCAGATGTAGCTGTGGCTCCTGAAATCTATCAAGATTCATCTAAAATATGCGTTTGGGTCTCCTTTG-GTGAAACTTTGACAGGATAATAGAATTAGATTTGCTGAATTCCACTAAGCTGTAAAGTAATGTGTCATCAGCTTCacttacttttcaaaaaatatttctctctGGTAATGCTCATCAATTTAGTGTTTCAACCCCTAAACATGAA-TTCTGAAACAAAGAGGATGACTCCATTCATTCTGCAAGTGACAGGACATTAAATA------------TATTGTAGCTCCAGCTAGCTCAGAT-AATGCGGGCTTGCTTAAGTTTGAtgtagaagaggaagagaagaagaaagcgtCTGGTGAGAGAGCAGAGGTCTCTGGAAGGAGATTTGAGGATGCCACACCTACTACACAGACCTGGGTCCTGGAGGAACATTTCA--------------AGAGGAAGACCAGCAGG-GCTCAGCTCCTG-CAGGGTCCCCATGTCACCACCTTTGCATGAACTCACTC-ACACAGAGTGCTGGGGGCCCTggattaaaattgttt-ttcattaagCAAAGGGATGTGGAGGCAGTGCATTTACTAATCCCAATACAACTGGTCAATACCTGTGGGTCGAGCGAGTGACCTGGAAAAGTACACTTCTACCACCAAACG----CTCATCTCA-GCACCTCTGCTGGGA---------TATCAGGTGGAACAGTACCAACT------GCTCAGCT--------------------------TTTGACAGCGGCTTCGGTAA-CAATCTAAATCTAGTATCAACCTTAAAGAGCTGGGTTTGCTTTCTTCTTCAAGTGTCTTGTCATGAGAAATACTGGTGAGATGGAGAAA--GATCCTGTTGTTCTCCACGGTGCATCATTTACCTGAGT--GAGATGGATGGGTAGCATGGGGAACGCATACAGTCTCCAC------ATGAAAAGCTT----------CCCAAGTAGAGGGAGGCA-----TACTGTGGGTAATGCCCA-TTTAAAGTAGAGTGT-----GAATCTCTCCATGGTGAAGACAGAGCAGTATAAATAGCTCCTG--GTCAGTGGCAAg----ctttcattccttcattcaaTGCACTTTTGATGAGTAATCACCAGGTGACAGGCGTTATTCTGGGCACTAAGGCAGATGGGGGCAGTGAG-------GGAGAAGAGACACAGATCAAAAAGCAAAG--GCATGTAGCTGAGATAC----------------TAGGTCTCACATTCATCCTCCTTCTTTCAGTGTAGACGTTAACAAGTTGCCAGCTGTGAAATCTTTGAGTAAGTTAGTTTTCCTTCTT

a score=79286
s chr3           154815315 5142 + 160039680 [encoded data, 5626 characters]
s HiC_scaffold_1 141814911 4929 + 233722169 [encoded data, 5626 characters]

a score=34596
s chr3           154823366 2094 + 160039680 GGGTATAGAGTAGAGAAAATGCTGGAACACCTAGTGCTTTTTATGCTTTAGACAAAAACAGACTTGAATGTGACAGAAA-----------------------------------------------TGCAGAGGC------CACGGTATCCATAGCCCAATTCTGGATACTTTTAATTTGTTACAAATAAAAAAATGTTTAATATGTTCCCCATAGAGTTAAATTTTAAATGAGATGTCATGAACATCAGAATAAGATCAGAAAAAAAGAATTGTCTGATCTCAAAGTATTTACGACGTAATGGGATTGAGGCACTCAGTGAGATGGTGAAATGGTAGAAGCACCCGTCATGGCACAAGGTGGCAGGCTGTGGCCATCTGCGCAGCACAGGCAT---GGAGGGGTAGCCTCA-AGGAGGGCATCTTCAAGCTGCA----ATGATGAAGATTGCTGAAATAGGTATGGGTGGCTGATTCATGCTTTGACAAGAATGAGGG-GTGGGCAAGGTTAAAAACCAATCAGGCAGAGGGCAGTGGCTGAC-------AGATTAAGCATTGTGTGTCAATAGGGCATCCCATCTATTCTAGAACATCTACAGTGTATCTTTTCAGGGCATTTTG-----TGAAGAGTCAGT-----TTGAAGTTTGTAAGATTATCCCAAACA-----------------TTCCAGCATTTTGGCCTAAGGAGTTAGTGGTACCTTTAGTCATTGAGACTGCAATAAATTCTTC-ACATAAGTTTTGCAATCTAAAGTGCACACATGAGGAGAATGAGAG-------------CCCTCAGTTCAAAACCACCGGGATGCAGGATAAAAATGTAATTTTGCTAATGGCATTAGTATCCAGGATAAAATTCCTCCCTC---TGTTGGAGGTGATAGAGAATTGCTGATGGTTTCAAAGCAC--------------TACATGAAGAAACACAAGCTGGCAGAGGGCAG--------GAGGTGCATGGAGAGG-TGGGGCAGGAGAGAAGTTAAAGATGG---AAATGCTGAAA----GAGGTCAGAGTTGAATGTATGGACTGAGGTTCTGTCTCTCTATTACCCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagaggcagagagaaagagagagaCCTGGCACTAAGGACTACATAAAAGGTATATATGAAGTG-----GAGACAAGGAGCAAAATTA--------------TTTAGGGTCATTTAAAACCTGGGGAGGATTATGAATGTAGCTATGAGTTGAC-CAGGGGAAAGGTTAAGGTAAA----------------GAAAGTTCTATA---------------GATAGACAAACAGAGGGAAGATTAGAGTGGAG---------GACCCGAC--------------------------------------------------CTATGTGTTCAA--TTCATTGAGCTACCATAGCACACAGTCCATTAATTCCAGGAAAATTAAGTGTGAATCGAGAATTTTTTACATTATATTCACATTGTCTAGGTTGAAATATGTTCCCAGGGCACTAGGCAAG----CTATTTAGAGGAGTCCTTGTAT------------TGCTAGCGATTGATCCCAAGGGTGTCTGTTTCAGAGCTTTGAATCCTACATCCCCAGTG-TCTTCTCCTGGACAGCTAACTGGGTCAC---ACACTATTCTCAGAGCTGAGCCCCATGCAAACCCTAATTGGTTTTCACATCTGAAAGGTTGTTCATCACTTTGTCATTTCTAAATTTAACATGATGTAATCCATGCACAAGATGGGAGATTTCAGACCCTGTGGGAGGAG-AAGTGCCACATGCCGAG--TTTCTAAATATATCTGGACACAAAATATTTTAAAAGACGCAGAACTTCAAGAATGGTTTCCTTAATCTCAGATTTTACTCAATTTGTGATTTTTGTACCGAATTAGCTATTTCCTCTTTTTCATGGAGGAAATACCTG---ACAACTTTCTACCTTGAAAAATTCTTTTATATAGGAAAAAATGTTAACCATAACTAAAGATAAGTATACATAAAAACAATGGAATCCTATACTAAGCCAAGAGTTTTTAAATTTCAATCTTCTGGCTGTTGACACCACAGCTAGAAGTCTGTA--TAAATGCAATGATTCAGTACATTGTTGAGGAGCCCAAGTCTCTACATTAGTGGGGAAGCACAACCGAAGCCTTGTCCACATTTTTCAAAGTCATGGTGGCACCCATGCAAAATTACACTTTCCTGTGTAATT-----GGGTAAGATAGCTTTGAGGCTCAGTGCTCA
s HiC_scaffold_1 141821803 2262 + 233722169 GAGGATAAAGGTTAGAAAATGTTTGAACAGTTAGTATTCCATTATTTTTTGATAAGAGTAGATTTGAGCATCACAGAAGGTATAGGCATCAAAAACTATGAGTGGTACAATTGTATTCATTTAAATTGCAGAAATGTATATCACGATAGACAAAGGCCCATTGATGATTTCTCTAATTTATTATAAACAATACACTA---AAAATTAACCACACATGGTAAAGTTTCAAATTAAATACTGTAAGTACCTgagaaaacacatgaaaagaaaatt-tctgcctttaaaatatttatgagctAATAGGAATAAG---CTGTATAAgatg---aaataatagaaatgtatAACATG--ACAAAGTGAC----TGTGAC--TTTTGGCAAACTATGCGTTGGGGTGGAATAGACTCACAAGAG-----CCTACAGCGTCACATCATGATTAGGCTGGCTGAGATGACTGCTGCAGGATGACAGCTATTTTGACCAGACTGGGGGAGTGGTCAAAGTTAAGAAT-AGTTATGCGAACGTGAGTGATGGGTCATCAGTAGGTTAACTACAG-GAAACAGTGGGCCCTCTTGTTTAT----------CTATAGTGTGCTTCACCAGGGTACTGTGGATACTGTAAATGCAGTATAATTTGTGTTTTGTATGACTGCCAAAAACACATGTAGAAATGTCAACTTCTGACCCTATCACATCAAATATTAGTAGCAA--TTCGCTATTGGGTCTTCCACAAAACATCCTACACAGTTCCTCAAAACCAGAATGTTTT--TGAGGAGAGGGAAAATGACAGTATCATACTCCCTGTTCTGAATCTTTGAGCC-TAGTATGGAAGTG-GGCATCACAGATGATTTCAGAGTCCAGGGTGAAATAACTTCATTCAATTTTAGAAGTAACATAGAATTCTTGTTGGTTTTAATGGAGATAATAGAGGATTGTACATGAGGAATCATATTTTGGCTGCAGGTAGTTAGATGAGATATACCTGGAGAAGATGGAAGAGCAGAGAAATGGAAGGTATTATGAAGGCTAAGAAGCTGAGGTCCAGATTGTATATATGA---------------------------CTGGGagtgaagcagagagagggagagagagttagagagagagagagagagagagagagagagagagagagagacagacagacagagacagagagacagagacagagagagagagagagagagagagagagagagagagagagagagagagaaacacaaacaCAGTGTGAGACTTTAAGGTCATTGTGAGCATGGTGTTAAAACTGCTGATTACTGCAAATTGACTCAGGAAAGACACTGAGGAAGAAggccagaaaaaaaatggaattttgagACTTGGTGGAAGACTTGGTACACTGACAGAGGAAGGGTTTGATCCGAGATATTAAAAGACAAGACTACGGTTAGATGGTAAACACCCTTCTCCATACCAACAGCTGGTCCTCTTCCTAGGCATACCAGTTTTATGGAGCCACCATGTTACACACCTGCTTTATTCCACACAAGCTATGTATGAACTGA-ACTTTTTAAAGTTATGTTCAGTTTTTAGAGACTGAAATGCATTCTGAGTGCACTAGATAAGTTTTCTATTTAAAGGAACCCGTTGATGAACTTTTTTTGTGTGAAAGATTAATCCCATACATATCTGTTCGATGGCTCCAAACTCTGGATCCCTGGTTCTCTGCTCCTGCATAGCTAACTAGGTCACTGCATTCTATTCTCAGAGCCCAGTTCCACACAAACGCTAATTGGTTTTCACATCTGAAAGGTTGTGTACCACTTTGTCATTTCTAAATTT-ACATGATGTAATCTATGTACAAGAT-GGAGATTTCGTACCCTGTGGGAGGAGCACACACCACATGCTTAGTTTTTCCAAAAGTATCcacacatgaaatattttaaaagaggcAGAGCTTCAAGAGTGCATTCCTCAGTCTCAGATTTTA-TCAATTTGTGGTTTCAAC-TGGAATTAATGAATTGCTATTATCAgtgaagaaaatatcagaatatcatttctcaccttg-aaatttgttttctgaaagaaaa-----taatcattagCAAACAAATATGGAAATGATTTCAATCTAATCCCCCATTAAATCAAGCATTACAGGATTCCAATCCACAATCTG-TAACTCCATAGCCAGAAATTGAAAACTAAATGTGGCATTTGCAAACACTGATGATGGGCC--------------------------------AAATCTTATACCCATGTTTCCAAATCACAAT--TATCTACCAAGAATTATG--TTACTGCGTAATTCATACGGGT----TAGTTTGGGAGCCCAAGGGTCA

a score=19880
s chr3           154825703 1160 + 160039680 ctggatactggtcctttctgagtttcccagatgattttaacatg----caaagttgggaaccactCT-----AGGCAGGTAGCCCCAGGACCCTGCTGGCCTTAGTCCACCGGTTCCTACATCCTTGGGTTCTTTCACTTTAAGAACTGACTGA--------CTCCCTTCTACAGCCTTCAGA-AAACAAGCTGAAAATGCAGGATTGTGAGGAATGCTTGAATCCATTCCTTGATCATCTTCCAGAACAAACTGGGACAAGTCCAGAAAACACAGCATTGGCAAAACACAATGAGCTTCTGGATCCTGCTGCCTCCTGTGCCGGGGGAATTTAGAAAGCACAGCAGAGGCTCCTG--TGGGAA-TCCAGCCGGGCTACCTACTAGATCT---CTCAGGAGGATTGCTTATACTTTCTGAGTC---CATTCTTCATCTTCAATAA-TGAAAGGTCTGCCTCTCAAAGCTTAATTACACAACTATTTAGACAGCATTTAAAAGAGTGTCCTGCATTTCACAGGTGTTCCATGGTGGCAGATATTTGAATAGAAC-ATTGGAAGGGATAGTCAGAGCCTGTTCACTGA------CTCCACTGTAAATTCATAATGACTACCATATATCAATCCAATTTATTCCATTTCCATTCTTTATCTGCTGTACAAATATTTATTACTTAACACCCCTACGTCAGCCAAACTGCAAGATAGTTGAATGTAGCAATGCATAA-AATGACACAATTCTTCTCTTGACTCCTTGTACATTTTCACTAAGTGCTTCAGCAGGAGCATTTATCTATACCATGGATCTATACCATTTATCTATACCATTTATCTATACCATGGATCTCAAATAATTAAGACTCT--GTTTGCTAG--GGTTGGAGCAATAAACAAATTGACCTCCTGTTCACTGACACTGTA---------AGAGGGACTAAGCTGTTCAGAGAAATATGCA---GGTAGGAAAAGAAGCCAT--AGTCCTACA----CCACAAAGGACAGTGAGTGGAGAAGAAGCAGCTGAGAAAATG-CAAGGAAGCTGCTCTAAGACACATACCAGG--CTGTGCGGCTGTCTCCCT-------ACATTCTTACTG------------TGTCGAG--------AAGCCA----------AGCTCTTCCATCCAAATCCCCCTTGCCCCACATGCTGCTGTGCCTCTTGCTCTGTGTCAGTTTCTGAGTGGCAAATTCTTGGACTTGGCTACAGTAGCAG
s HiC_scaffold_1 141824717 1142 + 233722169 ctgGACACTGGTACTTGCTAAAGCTC-----TAATTCTAATGTGGCATCAAAGCTGATAACCACTGtcataaagatggataaactcATGGCCCTGCTGAATTTAATCCATCAATTCCTATATCCTTGGGCTCTCTGATTTTAAGGACCTATTGATTGCTGGTCTTGCTTCTTCTGCCTTCATATATACGAGTTGAAAGGACTGCTATGGAAAAAGCAGGTGAATTCATTACTTCATCAGGTGCTAGAAGAAACTGGCAAAAGTCCAGCAAACACAAGTATTACCAAATACATCAAGCTTCTGGA----------------------ATGGTCCAGACAGCACAG--GAAACTACTGGTTAAGAATTCCAGCTCTGTCTccaattttctattaacttgggGATGTTGCCTGCCTCTTTTGAGCCTTACATTTGTCAGTTATAAAAACTGGAATATCTACCTCCCAAGGCTTAATTAGACGGCTATTCAA--AGTGCTTAAAATAGTGCTCAGCA-TTAGGAGATATTCAATAGTGATAGTTCTTTGAAGAGAAAGAATTGAGAAGACAGCTAAAGCCTGCTCACTGATTATTTCCCTAGTG---------AATAATTACCACAGAGTGAGCCAATTTtagcaattatttatttttatctaccACATGCACATTTACTACATACTGATCTTATACCAATCACAAGGCTAGGTATGTGAATATAGTAATGAATAAGAAAGGCATGAttcttttctttgtccattttacAGTTTAACTAAATTCTT--------------------------------TACCTGTTCTTGAT----------------ATTGGTTTCCAACAATTCAAAGTCTGAGCATGTTAGAAGGATGGTATGACTACCAGATTGACCTGCAATTCTCCCTTACAGCAAATACCTGTAGATGAGCTAGGCTGTTTAGAGAAATATGCACCGAGTAGAAAAACACTTCTCTGAGTTTGACAGCAGTCATGAAAGACCA-GAGGGCTATAAAAGTATTTAGGAGAATATCAAAGAAG----------------GCCAGAATCCTTGAGGTTTTCCCACCACTTGAGACAGTTTTATTGGCAGGGGATTACTGTCCAGGTTCTTGAAGGCCAGGGGAGCTGTGGTTCCTCCATCC----TCCACTTGCCC-----ACTG-TGGGTACTTtgcactttctctctctctgagttgTACATCCTGCGACTCATCTTCATTACCAG

a score=32966
s chr3           154826954 2295 + 160039680 tgtctctccatcttttggcagacacttgagttgtttccattcatggccattatgaacaagatttccatcaacac-atgtgtatggggattgtttgtatgtctgctttcagtt-ttgtgggct-atatccaggagtggaattgttgagATAGGAAGATGGGTGCTGCTC-TGAATGTCTGGTCTCCACTACC--AGAACTGACTCCAGGCTGATATGT-GGAATCCTTCCTTGAATTCCACAAGACCACCCTAAAATATATTCAATAATTTATAATGCTTCATCACTTTAGATCTTAGCAGAAGTCTCTCTGGTGCCAGA-------GCTGTTACTGACAACTTGCAGAAGAACCTAAACTAGCCAAGGATGAAAGTTTAGGTTTTTGTTCACAGTATATTGAAAATGGAATC---TAAA---TTCTTGGCCAGTGTTTTCCAGAGGGATGTTCAGGCTCCACTAGACAGCA-TCATGT-AGGTGACTGTTCAGATCTGGCACCGAAGTCTGGATTTACAGCAAGACCCTTGCTGACATCCGCACTTACCTTTGAGGCCACCCAGTGTAGGACCTTGCATTTAGGGCGTATTCCAACTCAAAACGACTCCGTAAAG--CTGCCACATGGCTCCGGCCAGGCCCTCCTCGGCTCAGTAGGCAATCAGAAGAAGAGGAAGGTGACAGAGAGCCACTGCTGTTACTTGATGCAGGAGACATGAGCTGCATGGGGACGGCATGGAAGGCCTTGTTTACT--------------AACTCCAACAGGCA------ACTGAACTGCA-----GCTTTCATTT----------GATGGCTCCTAATTTAATTTC--ATCTACACTTGCTTCT-TCTCCTTCCTTCAACCTCTGGCTGTGAGATCTGCTCAGCTTCATCTACTTTTTCTCCCATTTCTATTTTGA-AGCTGG--TGTTATTCTT-ATTCCTATCTTCCCCAAGCACAGTAAACCCAAGTTAAATGAACAAAACGT-TATTCAGATG----------ATTCTCATTTCATGATCAAAAGATCGACAACCACATTCCTCATTAAGGTGATAAGATTCACTCATGGCAGAGATCCTTTCAATTGTAGCTAAAATTTTTCCCTGAAGTAAAACAAATTTATACACCAtcttagcttcttttcttgttg-------ctcagataaaatact-----------ctgacaaaagcaatttaagggagaaggaaggtttgtttta--gctcacagttcaagatacagtccatcttggtggggaattcagggcagcatgagcttgaagcagctctgagat---tgcatccatgggcagggaagagtgataacaca------------ttctgctcag----------------ctcactctctccactttatacagactaggatctcagtccagg----aatggtgtcatccagtgttaaaatgggtcttcccatagcaattaacataagacaaccaacacaatcaggcacaggtgtgcccagg--tatccatttcccaggtgactttaggtcttaccaaggagacaacagtaaccatcataTTGACTTTTGTAAGAATAGATCCATTTTGTAAGATGAAGCATGGTTTAATATCTAGCAAATGGTTTTTTCCCAAGagaacaaaatcaatctctttgctaactggcagtcctttggatttttgaagacaacctgtggtctcaccctgatgggatcttctcatccttttg-gtaaaaatccttggtttctccaaatgctcctcataatataggatttt-aacttattcagccttctgattgctcttcact-acaatgctagcttcagttttcatta-ttcttttAATGACCTAGAG-TTCAATTGGGTCCTTTTTTGTTTGGTCATCTCAGAGTAGGAATGGTCA--GACCTTTTGTTCTGCAATAGGAGAGGCTCTTCATGCTGTAGCTGCCTCTGAGCTTATTA-----TAGCACTGACAATGTGACCTCGAGACCATGTCTTCCGTTCAGTTCATCCTTTTACTATTGTTTCTATGGCTCTGG-GAAGAACAGTGTGTTATTCCTTTCAGAATTATTCTTGTTAATCACGTGGTGTTATTTCACTTTCCAAGATATTATAGATTCTTGCCTTCAAATGTTTTCTGACCCTCTCAAACATTGTCACATCACCAGTGTGACCAGCAGGTCTCCCTTGACCTTGGTGTCAG--GCTGACTAAGAAATTGGATAGTGGGGAGGACAGAGCCATATGAGATC-----------------CCAGAAGCCTGGCTCATTAATTAGTGTAACCCA-TCCAATGAGCTCTCTTTGCATATAGGTGCTTTGTCTTCTCCACTTAGGGGAGAGTGTCCCAGAAGTCCTGATTAGTTTGACAAAACAAGCTTGTTTGCCAGATCCTTCCATCCATTGTCCCTGTTTCTGG
s HiC_scaffold_1 141828080 2327 + 233722169 tatctgttcacCTTTTGATGAGGCTTATCACTGTTTCCACTTTTGGTGATTGTGAATAATGTTGTTATAAACATTACTAGTAT-----TTGTTGAAATACTTATTTCTAATGACTGTGGGTTTATTCTCAGGAG-AGAAGCACTGGGTTATGGTGATACTTGTGACTCCTGAACTTTTTGTGCTAAGAGCCTCAAAGCtgtttcctggctcctccctaGGAATTCTTCCTTGAATTCCCTAAAATAATGTTAGAAAAcatacaataaattat----ttttgttgctttagaatt--gc-tatttcttttttatgttagaATTAACTGCTATTACTTTCAAATTAGAGAATA---CATACTAGCCAAGAACAAAATTTCTAATATTTAGTCATAATATTGTGAGAA--GAATCAACTAAAAATCCCTCTTTCAATATTTTCCAGAGAGTTCTTCAG--TCCCGTTGATAGTAATCAAATCAGGTGATTTTCATGATGGAATTCTAAAAGCTGGTTTTATGGTGAAACTCCTGTTTGTGGGGGCACTCAATTTTGGGGCCAGGCAGCGAAGGACCTCGCGTTTAGCATGGATTCCAACTGAAAAGGCCTC---AAAGGTCTGCCATGTGTCTCTGGCCAAAGCCTTCCTGGTTCACCAGGCAATTAGAAAAACAGGAAGGTGAAAAAAACCCACTGCTATTACTCGATACTGGAGACATCAGCTGAGTGAGGGAGGCATTTAACAAACTGTTTaataagtcattttttaaaaatccaacaggCATAAGGCACAGAATAGAATATGTGTTTTAACTTTCTATTCCAggatttatcatattttaatttctattctcagcttgtttctggcttttcctttCAGCCTCTGATAGCGACACCTGGCTAGCTTAATTTACTTTTTGACCCAGTTCTATGTTGAGAACTGGATTGTTAAACTTGGCTTCAGTTTTCCAAAAACACAGTAGGTCCAAGTCAGATTTgtaaagcatatatttagaggtgtcttggttactttcattgctgggacgaaatacctg-----acattcaaaatgaaggaaggaaagcttttttttagc----------tcactgtttgttggaggtttc---------------agtccata-atcatc-tggctccaaggcagggtggcacagtcATAGAGGTAACACTTAAagaagcagccagcaaaagcagccaaagcaaaagGGAGCTTCCATTATACTGTAAAGAGGCTAAGCCATCCCCCACCCT-CCACCAAGgctagtgtagca----ctcacatcacctcTGTGCTCTattcttgcacaggctgaggatatttacaaggtaaggatcctggttccctgctgagtttcttagttaaacttctaaacttctcaagttgacataatgtagGTTATTAGTTGTTGGTTAAAAGACTTTCTCTAGTTTTGCACTAGGG----CAATAAGACTTGTGATAAAAGTTCCTTCA-----------AATTGTACCTAAAATTATTCTCTTTACATGAAATCAT-GGCATTGACATAGAGTGGACTTAAATC----------TTTTCtgaaaaacacatttcttttgTAAGATGAAGCATGCTctcatgcctggcaagtg--ttTTTCCGTAAAGAACAAAGCCATTGTTTTATCACACC-ATAATTCTTCAGGTGTTCAAAATGAGCTGTTAGACACACCCAAA-------TTTTCTTTCTGTAGTACAAGCATCTCTTGTTCCTTCAATTCATTCTCAAATTACATCATTTTCAACTTTTTCACAATTCTAA--ACCCTACACTAAAAATGTT--TCCCAGTCTTAATTAGCCCTTTCAAAGGGTTAGAGATGCAACAGGATACCATTTTG-TTGGTCATCTTAAAAGAAGAATgatcatttatcatttattctgcAGCAAGACAGCCACTCTGTCTTGTAATTGCCAATGAACATATCACCCGCTAATATTCGTAGTG---CTTCTAAACTAT-TCTACTCTTC----CATACTTTCGTTATTATTTTCTTGGTTCAGGTGTAGAATATGATATTATTCTTCTTACCTTTCTTCTTGCTTGACAAGTCCTGTTACTTAACTCTCCAGGGTATTTTAGGACCCTG-------GTATATTCTGTCCTTTC--AACTTTGTC----TTCAGATGTGATGAGAAGCTCCACCTTGACTTTGGTCTAAGCCACTGACTGAGAGGTTGAAGAGCAGAAGGGATGGAG-TAGATGGGATTTTGCAACTCAAGCTCCATTAAGACTCTGATCCATGAATTAGTACCACCCAGGCCAGCAAACTCTTTTTGCACACAGCCCCTTTATCTT------TATGGAGATACAGTACTGAACAGAATGGTCAATTTAACAAGACAAGCTAG--TAGCAGAACCT----ACCATTGTCGTTTTCTCTGG

a score=14117
s chr3           154832212 456 + 160039680 TCTGCCCCTTCCCTCTGCATGCGCATGGACCACAGGCTTGTGTGTGGTCCCTATATTTTCCC-------------------GTGCGTTT-GAAAGATATTATTTCTGGATGGGTGCTCCTGTTTTAGCTCCTTTGCCTATTTTTAAATGGTATTTCATGATCAGGCATATAGCAAATTAAGGCAATTATTGAGAAAATTAAAGCAAACATCTCCTTGATGTTAAGGT-----AATTTTTCTCATTAGCCTGATTTTCAGCATCAATCACTTGGT-----------GTCCTGTAAAGGCTCTGCCTTCCAGTGGATTTGTGCATTTTTTCAGATAGTGTCTTTCTTCT--GTATTGAACACAAATGGACAATAGCTTTCTAGCAGGCTCACTGCTTCTGTACAAATTTGTAGAAAAAAAAGATTAAATATTTACCTTCCAATATGTTTTTTATATTTACAAATCTTAAATATTTGCTTTATTTACTTATTTGTaa
s HiC_scaffold_1 141831294 475 + 233722169 TTTGCTCCTTTCCTTCCTGCGCAGATGGAC-ACATGATTTTATCAGTGCGCTATGCTTTTCCCTTTGTCAGTAACACCCCTGTGCTTTTAGGAATATATTGCTTTTGAATTAGGGCTCCTGTTCTAGTTCCTTTGCCTATTTTCAAAGTCTATCTCCTGACCAGGTGTATAGAAAATTAAGGCAATTATTgagaaaattaaagcaaacagCTCCTTGATAGGAAGGGGAGAAAATT----CCATTAACCCGATTTTCAACATATAGCACTTTATGCAGCATATGGGTGGTTTGAAATCAGTTCCTCCCAATTAATTTATGCATTATTTTTGTGATCGCTTTTCTTATTCTTATCAAACATAATTGGACAACAGCTT------AAGGTTTTAGCTTTTATCTCACTGTATATAGGAACTGATTTAAGGAATTACCTTCAAATATATTTgttatactttcaaa--------attttacttatagatttttttttaa

a score=50666
s chr3           154833606 1470 + 160039680 GAGCTTCTACATAGATGCTTCAGAAGGTGAGATTCTTACCTCCACGTTACACAGGCACTCCTCCAGCTTCCTAACGACTTCAGAGAACTCGGGTCTTCCCTGTAAA-ACAAGAAAGGACTATTTTTCTCCCTTAAGAATAAAAGAAAGGAAACG--CTTTGGGTTTGAAAAATTGAGTATTTGCATTTGTAAAGAATGAGATTAGCAATAAAGTATATTTTTATTTAAAATGCACTTGTATTGAAGAGCTAATTGAATGTTCATTTACTGTTCATGGAGGGATGTTGAGTCTTTCTGTGATAAGAGTTTTAACTCAGAATTTGGAACTACATTCAGATAATGAAATAGTGGAAAGTCTTTAATTAGCTTTGCATGTTTTTAAATGGCAGGGTTTCTTCTTCAAAACGGAAGAATAAAAGCGAATGCTGAGAACTGTTAACCAACTCGATGCCTCACAGTGTGGTGTGCGCATCCCAG-----AAAGAACCCCTGGCCCTCACTTTGTAAT----CAGCTTCATTTCTGGAATGACATCTCTTATTGACAGCCAAGGCCAGACTAAGGACCTCACAACTCTGCCCTACTTTCAGACTTAGAG--------TTTTAGCTTCAAAACTTGCCATCGAAGATATTGGTTATTACAAACTGCAATGCCATATAAGTTTGGTTAAGTGGTTATTGTGTCCGTTGTATATTTCAAGCC--TTGTTCAAGTCACAGGGGATATAAAAATAAATGAGGAAATACAGGAAAAATTCTTGAGATCTTAgaaaacgttggtctcttttaaagaa-ataatatgtttccctgtgtcagatactaaggactgtgcaccctgccacgtctccttttatgaaagtttcactgccaggaggGGGAGAGGCCCATTGAACGTGCGGGCTCAGCAGCCAGCTAATTTAGAACCGTAGCAGAACAATTTCTCCCTCTCTATCTATTCCTCCCCCGAGGACACTGCTG--GCTCCGGAGCCTGCACAAATGGGAGCGTCGTTGCTGGAGAGCTCAGTCCTGCTCCTCTGAGTTGGTGG--------------GTGAGCAGCTG----TGTCTTCCTTG------CTGCTGCCTATAAGGG--TTTCTCCCTTTAGAGCACCATGTCATCACCTCTTCCA---------------CACAGTCTGTTCTTTGGTG-TCTTAACGACTGGTTTACAGTCAAGCTCTGCATGCTCAGTTCCTTTACTGTACATATTGAAAGTCTTAGCAC---CCTGGCCTACAGGCCCCTTGTCTCCTTCTCCCTAGTGAGTTTTCCCTCTCCATTGACATGGGCGCTC-TCTCTTGGGTCCTATCCGAGTCT----CATAAACAGGTCTATGAGGTTCTTCCGTGTTCCCCAT-------CCTACTCTGACATTACTCAGTCTATGCGAAGTCTCTTCCTTCGTGTGCCTCACTTGTAGAATTTTAGCTCTAACACCC--TGAATTCCTGGTTCTCCCAAGTCGTCTTACCAGGAAAAACAAAGCCTTCTCATTGAGACACTTTCCA
s HiC_scaffold_1 141831969 1480 + 233722169 GATTTTTTATGGATATACTTCTGAAGGTACAGTCCTTACCTCAGTGTTTCAGAGACACTTCT--GACTTCCTAACAACTTCAGAAAACTTGGGTCTTCCCTGAAATTACAGGAGA---------TTTTCCCTtaagaataaaaggaaggaaactgtCTATGGGTTTTAAAA-TTGAGTATTTGCATTTGCAAAGGATGAGATTAacaataaagtatatttttatttaaaatacacttgtatggaagtgTTAATTGAATGCTCATTTGCTGTTCATGGAGGGATGTTGAGTTTTCTTCTGATAAGAGTTTTAAGTCAGAATTCGCAGCTACATTCAGATAATGAAATAGTGGAAAAGCTTTGATTAGCTTTGCATGCTTTTAAATGACATGTTTTCATCTtccaaatgaaagaataaaagcaaatactAAAAACTATTAACTATCTCAGTGCCTTATAATATACTGCACATGTGTGTGAAGGAAAAGAATTGCTAAAGCTAATTTTATAATTACACAGCTTCACGACTGAACAGACAGCTCAGATTCAAAGCTAAGAAGAAAACACAGACCTCATGACTATGCCCCACTTTAGGGTTTAAAGTAAGTTCTTTATAATCTTAAAAACTGTCATTAAAGAAACTGTCCATTATAAACTTCACTGTCAGTTAAGTTTGGTTAAACATCTCTTGTATTCTGATTATATCTCAAGCCTTTTTTTCCAGTTGCAAAGTATATAAGAATAGCTATGAATCCACAGGAAAAATtcgaaaaaattttgaaaatgctcctttcttttgaaaaacatgaTATGCCTCCCATTGTCAGATCCTGAGGACTATGCATCCTATCATTTCTCCCTTTATGAAATTTTTACTGCCAAGAGGTAGAGAGCCCAATTTAACATTCAGACGCAGTTACCACCTAATTTAGAATCTTAGGAGAACAATTTCTCCCTTAACATCCAGCCCTCCCCTGAGGATGCAGCTGCTTCCCCAGAGCCCTCTTTAGTGGGAGCTGTTTTCCCAG---GCACACTCCTGCTCCTCCAGGTTGGTGGGGTTGGCGGTGAATGTGAGGAAGAGATCCTGTCTTCCTTGTCAGCTCTGCTGTttccaaacatttttttccccttgaaacA------CACCAGCTCTACCGTGGACCCCACTGTTCCACAGCCTTCTCTGTGACACCCTCAAAGATTG----------------TGCATTCTC-------TACCCATGCAGACAGTCAGTCACTGCAATAGCCTGGCTTCTGGGTTCCTCATCT-----TCTCTAAGTAGCTTGTCCTCTGTCTTCATATAGCCACTCAGCAGTAGAGTCACACTCTTGTCTGTGCCCCTACAAGGCCTATAAA------------CCCCCATAGGTTCACCCACT-TGATCTTCATCAGAATACTCTGGGTCTGGTCTTT----TAATTCACTTCTAGAATTCAGACTCCAACAATATGTGGGTACTTGAATTTCACCATT--------TAAGAAAAGGAAAGCCTTATAATCGTGAACATTTCCA

a score=106239
s chr3           154837429 5169 + 160039680 [encoded data, 5662 characters]
s HiC_scaffold_1 141835049 5005 + 233722169 [encoded data, 5662 characters]

a score=11672
s chr3           154842962 646 + 160039680 ctTTTTAAGAAACTTTGTGAAGTCTCCGGCTCACACCCTTCATAATACCAAGAACCTAAACTGTGAGGGGTTCCCTCTCAGCTGTGGCCATGAAGAACATGCAGAGACTGTTTGAGTCCAACTGTGACTCTAAGGGTCATAATGTCACTTTGGCTCTGAAGGACAGGCGTCCTCTCCTCCCAGGGCAGGATGTGGCTCTCATCACTGCGCTTGGCTTTGCAGGTACACCTGGGAAACAGGCCTCTTCT---------TTCCACCCGTGAGTGTG-----------------TTTTCTTGGAGCA-TGTGAGTCGTCTCCACA----GCAGCCGGGAGAGTGGGAGGATTGTGGAAGTGAGGTGAAGGAGAAGTGTCAGCAGACCTGGCACAGGTTAGCAGCACTTCCTGTTTCAGAAGAGCAGTGTAAGACAAGAGATAGGAACCCGAGAAGGAAGGACTACGGTCCCAGTGTAACTCGTA----TAATAATTTGGAAAGATGAACTCTTCTTGTTACAAACACTT--CCTGTTGCCATGACTGCAACACAGGGATACTCTG----TTTCAGTAACCGCTTTCCACACACAACTGGGATATTTATCTACGACTCAAGGA-AAACGTTTAAAGACATGGTGAGCTGTAA--GCACTT----GGGAATTCATATCTGTAGACTTTTCCTTCTTGTA
s HiC_scaffold_1 141840048 659 + 233722169 CTTTTTAAGAAACTACATTAAGTCTTCCGCTCACACACTGAGAAACACTGTGGACATACACTGCCAGCGGTCGTTTC-CATCTGCGGCCATCAAGAGTGTGCTGAGGCTGTCTGAGACCAACTGCGATTCCAAGGCTCCCAACCTCACGCTGGTTCTAAAGGACAGGCGTCCCCTCCCGCCAGGGCCGGATGGGACCCTGCTGACCGTGTTGGGCTTTGCAGGTATG-TTAGAAGTCCGCCCTCCTCTTCTGCCATCTCCTGTCCATGTTTGTAAGACCACTAAACGATACCTTTCTCAGAGAACTGGGAGGCATTTGCAAGAATTACAGATGGGAGA---AGTTGACAGTCCATGTGGGAGGA--------TGGTAGCCCAGTTGGCACAAATCCCAAGAAGTT-CTGTTTCAGGACAGCTGCCTAACTTAATGGA-ATGAGCTCGGAATTCAAGAGCTTTATACCTGATATGACTCAGGATATTACTATCTTGAGTAATTTAACTTATCT--------ATACTTAACTTGTTATCA-----GTAATAAAGGAATAGTATGTATATTTGATTGTCTGTTTACTAAAGA------GTATATTTAT-TATGACCCTAGGATATAAGTATTAAAAATTGATCTGGCACAAATGCATTTCTCAAGGCCTTCACATGTGTATGCCTTTCTATGGTGTA

a score=31095
s chr3           154844983 786 + 160039680 CATATACAAACTGCACAGTAGAATGAAGTCAATTAAAACAGCTACTGTCTGGCTTGATGATTTTCCTG-TAG-GATAGA--TGATA--------GATGCCT-------CCTATGTCTTCACATATGTGGGCACCACGTGT---------------CTCCCAAGGTGTTCTCCT--AATTGTTTTTTTTTTTTTTAATGCCACAGGAGCCATTGGTCTTACATGTGCAGGGTTAATCATATTTAACTGGAAACTCCAACAAGGCAGAGCAAATGAACGTACATCCAAAAACCTTTGTTGCAAAACCCTCAATGAATCCCTGTGTGTGCACGAAGCAAGAAATGGCCATGCCGTGGGGTACTGTAACTGCCACTTAACTCGAGAAAATGAGACAGAGGTCATGTCTGATGTAGGCTCCATAAAGGAAACACCACTTAGACAGGAAAACAGCCATCAAGCAATGCTGGCCTCCAAGTCCACAGCCCTGGATGTATCAGTCAGAAAGCTGAAAGGCAGAGACCATGGGGCACACAGTGCTCACTCTTGCCTGGGCAATGAGCTGCTACAGGCAGGATGCTTGGGGCCTCCTGGGAACAAGAAAGCTCTTTATGATGCAGACTTAGTGACAAGATGTTGTCCAAAGACAGCTGAAAAGCCAAACAACCAGAAACATGGAGAAGTCCAGTCTCAAATCCTGCCACAGCATGGAACAAGAACAATAGGTGAGCTTGTC---TGTTAGAAAACCCCACTGTGCTTA---------------------------------------GAGAAGTGCTATAAAATTCACTGTAGTCTGTTTAGTCTGTTTCTTCCTTTTTTGAAGATATAAAGGT
s HiC_scaffold_1 141845436 844 + 233722169 cagacagatattaGAAAGCAGAATAATGTCAATTAAAA-------TGTCTGGCCCATTGCTTTTTCAAATAGTGATGGACTTGCTATTCATACTGATGCCCTGTAAGCCATGAGCCTATATATTTGTGGGTTTTGTGTTTGGTGATTTATATGTCTTCCTATGACGTTGTCCTTTAATGGTTTCTCTATTT------GCTGCAGGAGCTGTTGTCCTCACTTGTCTAGGTTTAGTTGCATTTAACTGGAAACTCCGACAAGGCAAAGCAAATGAACACACATCAGAAAACCATTGTTGCAGAACCTTCAATGAATCCCTGTGTGGTCATGAGGCAAGAAATCACCACGCTAAAGGATACTGTAACTGCCACTTAACTCAGGAAAACGAGATACAGGTCACGTCCATCGTGGGGCTGGGAAAGGAAATGCCACTTCTGCGGGAAAACAGCCATCAAGCAGCATTGGCCTCTGAGTCCACAGCCCTTGACAAATCATTCCGAAACCCGAAAGGGAAAGACCATGGGGGAGACGGTGCTTTCCTCTGCCTGGATAGCAGATTGCTGCAGTCAGGATGCTCAGAGCCTCCTGGAAAAAGGGCAGCTTTTCCTGATGCAGGTTTAATTACCAGATACTGTCCAAAGAGCATTGAAAAGCTGAGGAGTCTTCAGCATGGAGAAGGCCAATCTCAAACACTGCCGGGGCTTCTTAGGAGAACAACAGGTGAGTTTGTCTTGTATCAGGAAATCCTACTCCAGTTAATTCCCTTGGAAGGAGgaaatctctttaatttcttccacaAGAAGTACTGTGGAAATCACTAAAGC-------ACCACTCTATTCCTCTTCTGCAGATCTAAAgat

a score=141567
s chr3           154847139 7865 + 160039680 [encoded data, 8622 characters]
s HiC_scaffold_1 141846276 8189 + 233722169 [encoded data, 8622 characters]

a score=10272
s chr3           154856487 450 + 160039680 ACACATTTCATAAGAAGAAACAAACTC-ACTCACTTCGGGACATGCATTCCAGCCCCGCATCAGCAGAGATGAGATTGGCTTGGGGATGGAGTAGCCGATGGGAGGTCTGATGTGGTGGTACGCCATATCTGCTGCTGCAGCGGCTGCAACATAAAGTTGT-------------AAATCT---TACTTATTCCAGAAAG-------AC---CGAGAGAGACATTTAAAGGCAACGTGCATGGGATTTGACAGGAC---------CTCTGGGCTGACTTCCTCCCTTACCTATAAAGAAGACTAGACAGT-TTGTACT--ACATTTATTTTTATTATTTCCTGTCTATTGGGCAGTTGAGTCTATGCAGTGAGCAGAGAGAGTATTATAGAGGAACAAA-----------GGACCAAGTAGTTCAGGATGTTTGACGTATGCAGATAGACACACG-------ACAGAAA--AGAGACTGGAGGACAGACTGGAGGAAACTCCATAGTGTC
s HiC_scaffold_1 141859596 485 + 233722169 ACACATTTtctaagaggaaataaaaactacTCTTTTCAAGACATGCGTTCCAATCTTGCATTACCAGAGATGATATGGGCTTAGGGATGGGACCACCAATGGGAAGCCTGATGTGGTAGTAAGCCACAtctgctgctgccactgcta-aAAACCAAGCTGTCATGTCAGtttcaagatttttatatttatttcaagaaGCATATGCACGCATAAGAAAGTCA-TCACAGTCAATCTGTATCATATTGACTAAGATTCCAAAAAACTCTAGGCTATCATTTCTCCT----------GAATAGCAGAtagtctcatactcaaagatgaACTTCATAAT----CATTCATTTGGCTGTTGATTCAAT--AATGAGCAGAG-GTgttttataaaggagaaaaacagaaaacaggaccCAAGTCGTTTAGGTTGTCTGAAGTGTAAGGA---ACATGCATAATGttacaggaattcaaaattgAAAGCTGGACTGGGTGAAACTGC--AGTGTC

a score=6271
s chr3           154857695 422 + 160039680 cTATTTTAAATCACTGATTTCCACATCCCCTGAAAGGT-AAGTATATGGATTTTTAAATTTCTTTTTT------TTTTTTGTATCAGAGTATCATGGCAGATAAAGATATAAACTCAAGTATTTTGGACAATCATTCAAAGCAGGTACTA-----------ATGTCTGAGCCTGGG-AT---GAGTTTGTAATTATTAACATTTAAAAAAGTAGCCCACAATTGGTATAAGCTTTTGTTCCAGAGTCCCTCCTTTTTCAATAAACATGATAATGAAAA----TGGCAAATAACACATTATTCTCTAATGGTT------AAAAAT---------------GAAGGAGAGACTTTC-AGATTACTCTACATCCTGGCTCTAGTATGTGGTGAAGT----AGCATTGGCTTGTATCTTACTG-GCTTTGGGAtctctctctct-ctctc----------tctctctctctTAA-----tttatttatttacttt
s HiC_scaffold_1 141860271 462 + 233722169 CTGTCTGCAACCAATGATTTCTATGCCCTTTTAAAAACCAGGCATATAG---------CTACTTTTGTGGAATATATTCTATATTAGA-CATCAGGATAGA-----------------ATCCTCTTAACAGCTATGCAAAgtaggtattattattattattatgtgtgtgtgtgggcatctagtatttttaatttataatcattCTAAATATAGCTAATAATTGGTGTAACCTTTTGTTCCAAAGTTCAATCTTTTTCAGCACATATCACAATGAAAGTTCTTTGTAAACAGCACGTGATGCCCTGTTTATTACTCAGAAAAATTATTGTGCACCAGTGGGAGGATCAAGTTGCAAGATGTTTCTGCTTTCTG--TCTTGTAGATGGCGGTGTCATCAGCATCTGTTTGTATCTTAATGAGTTCTGAGATATAATCCACTACTCTCCTATCAAAATTCACTTCTACTCAATTCTGTTTATCCATCTACTTT

a score=29337
s chr3           154858925 3558 + 160039680 TACCAAAATCCACATCTGCTAAATTCTGTTTATTCTTCTCATCTCAGCAGATCCAGTGAAGTTACATTCAAAGTAAATTAA-ATTTATTGCTTTTTGGGTTATTCTGAATTAAGACCTAATTTAACCAATTGTAAAATTACTCATTATTTGTAGAAATTGAAAAAAAATAAGGGAATTAGAAAATGTAAAATATTATTATTGAGAAAAAGGCTATTCTATCCATAAAATGAGTTGAGCTGACCAGAGTCATCTCTTCTGATGCCTTTTTAGGGTCTGATATCAATTACAGAAAGTGATTGTCTGCTTCTTTGCTATGAGTCTGGAAAAATCAATTACAGGTGAATGatatttgtcaaaatatttgttaaaatatttTGAGAATCTCTCTTTTCCATCTATGATTGAGCCTATGTTGACATATGATTATGGAGTTCTTTTTTTCATAAATTAAAACA-----TTAAGCAATTAAGCA--TTTCCATGTTATTAAAACTATGTGTTAACACATTTTAATGA--CTGCATTTACTGTGATTTCCTTAATCACTTCTCAATTTTAGGTTATTTGAAATTCTTCAAAGAGTATTTTTT--AATGGGAATTTCTGTATATTATAGGTGAGACATTTATGGTATATTAAGGGGTGAAAATAACCTATCAAATGACATGAATACTTTCAACCAGCT-----CATATTAGCGAAGCTGTTTTCCTGAGCATCCCTATTAACAGATGCTCTTACTAGGAAGTG-GAAAGATTGTTGTTACCGCCACTGCATCAGAAAAAAA--ATTCT-TTTCAAAAAGCAGCTGTATGGTTCCTTGTTGTTTAGACTGTGTTCTTATTTA-CTAAAGCATCTTTCTTGGCTTACCAATATAGGAGTAGAATCCCTTCATGGGTTATTGTG-AACTAGTTTTAGTTTCCCTAAGAATTAAGTAAGCCA--GAATTACCAAAGAGACAAATGCTTGCTT-TCACTAATCTGATGACTGTACTATTACATGACGATTGGTTAGTGCTGACTCAGCTCCAGGACATGCACAGAAATCAGTCCAGTGAGTGTGTTCA-----ATTACAGGTCTCCTAGTGGGTGGAGACGGACTGTCCTCAGAAAGGGTTAAACTGATGCCT------GTCCCCAGCATCT-CCTTCAAAGCTCTTTCATGTTGTGAGATCAAACGTG-AGAGTAATTTATCTGCTTCTTGGTAGTGTGTCTGAAAAGTCCGTTTTGATGAGTGATTTTTTTCAGTCTTCGTTGTTCAAAGCAGA--CTGCAAGCCTTTGGAGTCTCCTCTGCTC------------TACTCTTGGTCATGAGGGTTCTCACTATCACCTCTACTTAAATGTGGGGCTCTCCTGTAGCTCCAGGGAGGTGGTGGAACTGCAAGTTGCCACTTTTAGATGGTTGGTCAGTTTTGCCTGTGGCAGGCTGCTCTGAAAGCTAGGGAATTTCCCGATACTCAGATCCAGGGACAGGACTCTCAACCCAGGCATCAAGTCTTTTCTCTGATTCTTACAGAAACTATGTTAAACGATTTGTGAAAATGTTGGTTCCTGCTTTTTTTTTTAAAGGCACTTTGCCATTTAAAGAAAGTGAGTCCATATTTAACACAAGAAAACATTCATTGTGCAATTATGTTTAAACTTT-----TATCCTGAGTATATGATGCTATTCGACTATGTATAGCTGCCCCCAGACCTCTCTGCAGCAACGAGATGCCCTTCTGAACTGAATAGAGCTGCCT-CCAGACCTATCTGCATCTCTGAGATGATGGTCTTCTGAACTG-TCAGTGTGTAAGCAGAAGGCTCCTGGGTACTTACATTATGAAAA----------TGTGACCGAGGAACTGAATTTGCAGTTTGGTTATTTTCTATGAACAGTTTTAAGTGAAAATGGCTATGCTCAGTGGTCTCCATATTGATTGGCACTATACTTCCACATAATTTTTTCCCTACACACATTATCCTGAGTAATGAGAC-----TTTAACATAATATTGTAACTCAGCCCCAAGAGTCTCTTCTGCCA-------------AGAACTCAAATTGTTCTGTGTCTATCAACACCTTCTCAAGAGATGACA---TGAATATAGTTCATCAGTTGTCATCTCTGAAAACAG----------------------------GTCACATACAGCGGGTGGCAACCCTCCTCCCAAACTCCTATAGCAAAAGGTACTCAGggggctgttgagat--cactcagctgatgaaagcttttgtcacacaagcctggtgacttga---gttccatcaaaaaacaaaaacaaaaaaaaaaacaaaaaa------cCCGCA---------------ATGGAAAGACAAATCAATTCTAAG----------------------TTCTGTTCTATCCCCAACATGCATGCCAGTGCTAACCA------ATTGCACCCACACAATACACACAATAGTAGTAAATTAAAAGTATGAAGGC-ATTGGATACG----CTGTAGGCTAACAGTCTAAGTGTAAACCTGGTGTCATTATTTTCAATAAAATGTGATAAGTAAATGAG----TCGTTAAGAAATGAA----TCACTACTTTTGCCAACGTTTTCGTGTTTGGGTTTTAAGTTCT----ACAGTATGGCTTTTCTCATCTACCTGTTTCTCCTTTGTGGACTGTGTTGTTCTGGAGGTCGGCATAGATGGACTCTGTCTTGGATCCTTCCCAAATACTCCTGCAGAACCTCACAGGACAACGACACCTACCGAGCCACACTCCATTGCCTGGTTACTTATCAGCCTCTTTGTGGCACTTACACACTTTCTGAAGTGAGGGACTATATCTCTTCCTGGTT-------------CTAAC--AGTAACTGGCAAAAACAAACATTAAAACAGGGCAGGT---TGAATAGATAGCTATGTAAGGAGTCAGAATGATATTTGACCAGAAGTACTGACTGGACTCAGTGTTATAGGACTCCATAAACAT----------CTGTTGAATGTGTGAAGG-GATGGATTAGTGTTAATGAGTATTAAACTCATTATTAAG-CATCAGAAGAAAGC-------CTAG-CATCTAGAGGCATTGT-GGATGAATATTATGTCCAGTGGGCTATTAAATTACAGTATAGTCAAGTGAATTGTTAAGACCTTGTGGCAAACTTGCCCAATAATG--TTTTATCCAACGCCTTTAGTGAAGGCTTT-------TGCAAACATCGTGGC-CATGAGGGAATGCCCTTCACAGGAGAACTGGAGGC--CTAACTATGGCTGGCATTGTTCTAAACTCCCTGGGAGAGCC-AATTAAGCC-ATTTTTCTCAGCAAGTAATAAGTTTGCTAAGCTTGTGATTCAGTGTGGAAGAGCCAGTTTGATGGTGACAA--------TTACGAGCTCAGGGCCTTGTGTGT--GCC-----CTCACTATAATGTGACATCCATGTTTGTCCTAACAAACCCCACAATGCAGGAC----TTAGTTCTCACTGATACACATCAGCATGACGTCGCCCCTGCTAAGTGTTAGCTA-------GCCTCTGTTCCTCTTCACAACAAATCTAAGAGGTCAAACGATCCATTTTAATCTGAACCCAGAAGGTTAGATGTTAG-AACACCATGGATTATTTATTGCTTTATTTAGACCAT------CAGGGGTCTGAGGGCTTGTTAAGGTTGTCTTTGGGTACAAATAAAAAGAGAAATGTTACAGTGAGTTATTGCGAACATTAAGGCTACCAACAGCCTTGTCTA-CATCAGC
s HiC_scaffold_1 141860689 3341 + 233722169 TATCAAAATTCACTTCTACTCAATTCTGTTTATCCATCTACTTTCAGGAGATCTGATGAAATAATGGACAGTGTAACTTAACACATTTTGGTTTATAGATTATTTTGAATGACTACATAATTTTTCCAATTGAGAAATTA----------------------------------ACTTTGAGAGTG---------------------AATACAACTTTATC---------------------------------------------------------------TTAGAAGAAACCATTG--------------------------AAAATACTTGCAA---------ATTTgt---aatatgtttta-----------------------------taaaattaagctTATGTTGATATACACGTATGTAGTTCCTTTTCTC-TAAATGAAGGCATTAATTTAAGCAATTAAGCATTTTTCCATGTTATTGAAACTC--TGTTAACATATTTTAATGACTCTGCATTTACTGTGATTTGCTTAATCATTTCCCGATTTTAAgttgtttcaaatatttcaaagaatatcTTTTCCAATATGAATTTATCCCTTTAAGAACTAATACACTCCTGATATACTGAGAGATGAAAGCAGTGTATTGGAGAGTGTGTATACTTT--ATGGACTTTATGTATACTGAT-AAGATATTTTCCAAATGGTTGTT-TTAGTTTATACTCTCAACAGCAATTGTGTGAGAAAGTTCTTATGCTATCTGCACTAGAAAAATATTATACTAATTTGAGAGGCAAATATAT--CCACTCATTATTTTGATTGTGCTTTTACTTATCAAAAGTGTCTGTGTCATACAACTTAGTTATGC-TGCCCTCCTTTCATTGGTTACTCCATGACTATTTTTAATTCCTTCTAGAGTTAGATAACTCAATAAAGAGTCAAATGAACTAATGCTTGGTGACCACTGAGCTCACT-CTAGTCTACTCCGTTATGACTGTTTAGATACTATTAAGCT------GGTGCATGTGAACCGGTGGAGAGAAGACATCTAAACTGATTATAGGTTTCTTAATGTGTCAAGAGTGACTGTTCTTAAAATGTGTCAAACTCACACCCAGATAGATCCCCATCACCTCCCTTTGAAGCTCTT--AGATTCTGCTGTCAAGTGTATGGAATTacttgtttgcttcttggtgCTGTGTTCAGAAAATCAGAC---ATGAATGAAATTT-----AATTCATTATTCAGAATAGATTCTGAAAAGTGTTGGCATTTTTTCCTCCCATTCGTTTTACTCATTCTTGGCAGTGTTACTACTCATTACCATCTCCACCAGAGAGCGGG------CAATACAATGTGAGAGGCTATGGGACTGAAATTTCTCACCCCTGGGTGGTT-------------------ATACCACATTAACAGATAT--------------CAGAGACTCAGGGATGGGCCTGTCAGCTCATTCAGc-----------ttgattattataaaa--tacattacaTGATTTATGTAAATATTGGTAT---CTTCTTTCACAAAACAAACTTTGCCActaaaagaggataaaactac-tTTAAAGTAACTGCTC-TTTATTGAGCAATTATTATT--TCTTCAACAGTGCCctgataattataatttattaaaacata-atagctgcta--------------------------------------aaataaaattgtgtGATAGAGCTTTCTACATT-----GATGAAAGCATTCTGCATTGTTCAATATGCTGGCATAAAG---------ATTTAAGCCCTGAAAAATGTGGGTCGTATGACAGAGAagc--aattt-taatttgtttaatttcaataa-----tatacatataaatagcCATGGTTAGTGGT-TTAACATTGGACAGCAC-------------AACTTTCTC------------ATCCTGAATGATGAGACCAGAGTTAAATATAACTTTGTGA--------CAAGGATCTACATAACCATGGGAACAATTTGTGGATTCAATTTATTCCTTACTTATCAGTACTTTATCAAGGGAAGATAATTTGAATGAAGATTATCAG-TGTTGCCTCTGGAAAAAAAGATATTCCAGTGAGTTCCAGAATAAGCATCCAATATAATATGTAACAGCTTTTGTCT---ACTTACATATCAAAATGTACTGAAAATCCCATCTACATGATAATAGGCTAAGGAAAT--------------GTCTAATGTATTAATCTTTTCTGTACAATTTTGTAAATGAATGGATAATCAATAAATGAATGCCTGGATTTTTCACACTTTTTATGGTTCGA-ATGTcaattctgagacaggatccCCTTTGCCTGGcattctcttccctcctctcttttcct--ctgtgaCATCTGTCCTTCATGGCATCTTTCC--------------TTTTAGGTCAGCGATATCCAGACTTTTAGAGACGGCCACCCTAAACCCACTGACTTATTGTACA-GTGgtaacactg----caattaaacctg---agcTCTTGGGTTTTTCTTTAGGTAACACAACTCGCCCAACTTGTGACGTCACCTCAGAG--AGGGCTCCACGTACCCATAGCAGCATACGTGTTCCAGGTTCGCCATCTCCCTTCT--------CGGTCTTCTAGAACTTGCCAGA----------------AACTCTCCCCGCGTACTCCCGAAGCACTTGATGCTTTAGTACCATCTCCTACACCACACTTAGGTGCTTGTCTACTCACTTGGCTCTGCGTGTAGATCATAAACTCATTGTGGTTATGGGCTGTGATTTTTCATGATTGATTGTTGTGGGCTTCACCTAGTAACTGGCAGTGAATAAGATTCAA--GAGTCACATTCATGAATAAATAAGCAT--------------TATTACATCaccagaaa--------------------ata-------ataaacatattgCTGTccttactgaatgaatgaaaacaatggGTTCCTGCCAA----TATCTTACtcacttttatgtttttagaaCAGAGCAGGGTGGCTAACCATCAAGAATCATTGGAGAATAAATACAACGCTTCATCTAATATTAAATTACA--ACAATCATGTAAACTATAGAGAGCTAGTGGCAAATTTAGCCAACAATGTCTTTTGTTCAAACCATTTGGTGAGGGGCTTCGATACATGTAAACTGTATGACGTATTAGGAAATGCTCTTAGCAGGAACGTTTAAGACTGTTTCCTA-GTCTGTCTGTGCTGTGAACTTTCTGGGAGGTCCTAATTAAGCCTACTTGCCTTATTAAGAA------TTTCTAGATGTGAGAAGCAGCAGGAAAGACACAGTGCCTTTGTGGTAAGCTTAGGCTTCTGAGGAAGGGGTCATATAGATAAGCCTCAAGTCCACCAGCATAGGACACTGAT-CATGTCTTAAAAGAACCCTAATGACAGGTTCCCACCAGGACCAACTGGTACACGGAGAGCTGCTGCTCTCAATACCCACTG-TAGCTAtgtttttgctgctgttgtttgaGTCTACAACTGT-AGAGCTGTACTATACTCTTTCAGTTTGAACCTAGAAAAGTAGATCTAAGCAACACGGTTCTATGCTTTCTGTTATATTTAGACCACACCATATAAGATACCTTGGGTTTTTTGTATGCATATCAGGGAGTGAATATCAAGTAAAATTTCACATTGAGTTAGTGTAAGTTTGGAGGCTACCAACTCTCTCATCTCTCATCAGC

a score=32503
s chr3           154863067 1424 + 160039680 GAAGCAGATAAAGTGAAATAGTGAAAATATCTGTCAGTAAGTATCGACTGAGATAAAGTTTATAAAACATTGTTAGATTTCACTTGTGTGCATGTGTTCTTCAAAG-----------TGCACCTGATTGTTTCTAATGGCCCAGGTTATTATGGTCAAGGCAATAGTGTTCCGCAATCAGCAGAAGAGCTAAAGTACA----CTGTTAAAGTT------------------------GTGCACACCTCCCATGTGAG-----------CAGCATCGGGG--GTACTAAGCATGCCTTAATTTTTAAAACTACATCCTATTCTCATTA-GAATGGTCAG--GAATAGGGTGAGTGATACCATTGTTTGTTCCCCATGCAATCTCCATCAGCACAGTGTAGCACCAAAGCATTGGCATTAGCAACCGTCTGACAGAGATCTGCATCTTCCGGACCAAATGCAATTCTCCCTGGAGTTCAAGAAATGACTAGCTGGCTCGCCTCACTTCAGTGATAAACTGATAAGGATTACCTCAGCAAACATGGGATTCAACCTGCT-CAGTTTCCCTGCTACTTGTACCTA-CGTCAGTGTGGT-ATCCAACCTAAGATTATTATAGTTAGGGCACGTTAAGATCCAGACCATGTAGGGAGGAGGACACAATTAAGCAGTATTTTCAAAGGAAGAGGGTACTTGATGACTACACGTAAACATCCTGTCGTATAACCAAGTCTCGAAGTATCCTGCCATTCATTCTTTTAAAGGCCATG-------TGTAGACGCTCCACAAGACTTGCAGACTGATTTTGGTTCTGGGATTTCCAGTTCATGACTCTAAATTAAACTTTTAATGTGAAGCCTCTCCCATGAAGCCTGGCTACAATAAACTGTCAGATGCTCTTAATGTGCTGATGCCTCCCAGACTTAGTGAGAGCTCGGCATCAAGGAA-CCCAGGACAC--AGTTGCATTTCCCTGCGAACCAGCTGGCACCATTGAGGAAAAAGGAAGATGAAAGAAAAACAAGAGACTT---GCTTTTGGA--TTCAAACA-GATTTCAGGATGATATACATGTCTGGGTAGATGGGGACTACATAGGGTTGGGTAAAGTATATATTATTGGATTAGCCAATCT--GGCATCCT-TTTGTCATTACTGATGTATTAGAGGACATAAGCCTAGGAGAGAAATCAAATCCAGGAAGCAGGTGTTGATTTCTTTCTCTGAATCACATCCAGGGAAGCTCTTACTAGCCAGG--------GAACTGG----ATCATGCTCAGCTCACTT---TCCACTTGGCTCGACAGCTTGGCTCTTTCTTTTTTTAA----TGGTGTCTCTTCTCACAGGTCTGTT-CTTTTCCTGTATCCATC----------------AGACAGA-----------TACCTTTGACTT-TCACTTCCCCAGGTATTACAACTTCAATTTATTGGAAAGTTTTTGCTCACTTCTTCCAAACCAACCT-TCCCATTTCTACCCAGGCCACCATTCTAGTTAGAATGTTCCACATTTC
s HiC_scaffold_1 141864174 1486 + 233722169 GAGGGTGATAAAGTGAGATATT--------TTATTAGCAAATATTGACCAAGACATGATTGCCAGAGGGCTTTTTG----CAATGTTGAGTGTGTGTGGTTAAAAAACATGATTGATTTAACTCCATTGTTTCTAACGAGCCAGGCTGGGGTGAAATAAGCAAACATGCTCTACCAGCCCAGCAAGAGCTAGGACACAGTCTTTGTTAAACCGACACTTTTCAATGATGTATCACCAGTGTACAGCATCTCAGTGAGACACAAGATTGCAATCTTGAGATTGTACTAGgaattgcttaatttttaaaaccacatCCCATTTTCATTACGTACTGTCAGAAGAACAGATTAATTTGCACCATTGTCTATTCTCATTGCAATCTTTGTCAGTGTAATGAAGTATCAGGATGTTAATATCAGCTATATTCACAGAAATATCACCATTTATTGAACCGA-TTTAATCTTTCCAGTGCTCTGTGCAGTGACGGGCTGGCTTGGCTCTTTTCAGGGATAGAAGGATATAGATTAGCATAATACAAAGGAGACTTACTTTACTTCTGTTTTCCTCCCACTCGTCCACATCACCAATGTGTTTACACCTTCTGAAATCATTATATTCTGGATGCTTTG-GACCCTAAGCACACATGGAGGAAACCACAA---GGCAGTAC-------AGAAAA----CCTAGATGGCTACAAATACAAGCCTTGCAAAATAACGGTGTCTCCAAGTGTTCttca--taattcatttaaaaaatgtgaaaccaAGGAAGTCAGTCTGCAAGTCATG---------TTTGGCTCCTGGACTTTCAGTTCACGGCTCCAAATTAAAGTCTCAACGTGAAGTCTCACC---AAAACCTGGCTATAATAAATTGGcagatgcttttaattttctgccACCTCTGAGACTTAGTTAAAGCTTGGCATTAAGGAATCCCAGGACACCAAGTTGGGTCTCTTCGTGAACCAGCTGGCAtcac-------acagaaaagcaaaaggaaaacaaaatgctttttatttttaaaatttcaaatatgattTGAAAATGAGCCATAGAAGTGGGAAGA-------------GGGTTGGATACAATACATATTAATAGATTAACTCATCCCAGTTTTCCTCTTTAGTTTTTGTGATGTATCAGAGGAGACAAGCCT-GGAGAGAAATACAATCTGGGAAGCAGGTGTTGATTTGTTTCTCTGAAATGTAGCCGGGACAACTCTCGCTTGCCAGGTTGTCCCCGCTCTGTTTTCATCCTGCTTGGTTCTTCTCGCTCTGCTTGGCTTTCCACGTTGGCTCCTTTCCTTTCCAATCTTTTTTGTTTCCTC-CACAAATCTGTTCCTTTTCCTGTATCCATCATCATGCTATTGGCTAAGTCGGAAGCCTGGAATTCACCCTTGATTCATTGTTCTCCCCTGTGCGCCCACCACAATCTACTGAGAAATCCTATTCAAATTTCTCCAAACCaaactctcttttctcttccaaaGCTACTGCTCCATGTAAAGTCTTAGACATTTC

a score=26437
s chr3           154865322 2474 + 160039680 CTCTTCGGCCTAGCCTGGTCTACTGGT-GTACTTTTC------------ACTGTCAGTAGTTTCAGAAACACGAGGTTTCTCTTTGTTTC---CTCATGCTTACAAGTTCCTGGCTCACAAGGAAGCAAGCACTTGGAAATAATGACATTAGGGAATGTTCTGTGAATGCTGACTACTGTAGACACTGTTTCAGCTCTC-----------AACTTCTCTAAGGTCACAAGACATGTGCCC--GTGGGGATTCCTTCTCTCTCCTGCAGCATCAGCTGAGAAGTGCTTTCTTTTAGAAAACTAAAT-TGGTACTGGCATTTAAAAACCTTTTGATACCTAAAGAAACACAAACTTTGATATCCAAAGAATTAACCAAACTAAAATCTTGGAGATTTAAAGACATAAACAAACTAAAATCCATTCCTCTGACAATTG---AGCAAACACACTCATGCTGGCCAACA------CTCAGCAAGATCTGGCAGCATCCGGATTGA--TTGTTCT--TGGGCCCGAGCACATAGTTCCACGGTCATACACCCTCTACACATG---CGTGTACACATGTCCTGTGGCCCTAGAGGAATTTGTTGTTTTGTGCCCTGCCTGCAGGTGCTGG---AAGTGATGGGTTTCCAGTCCTTATTAAAAGTGGGATTAGAAGCTTAATTTAAACATGTGCTTTTGAAAGAAACTCCCCTGAGTTTTGAATTCCTGGAAATGTGTA-TGACATTTGCCACACAGAGTCTATGCTAATATTGGAGTTTGACTCTTGTATCTCTCCAGGGTGTCAGCA-GCTGCATAGTAGGGAAGGATGGG--------AATCATGTTA---------TTGATCA-GCCTCTCCAAGCTGCAGAAAGGAGTGTGTTACTTAGTGTAGGTGGCTGATA--------ATACTTAGCCTGATGATTTATATCAATCATTGCTGAGCATATGCTAGATTGCCTAACCACTATGTTGATACCAG-AGTGTTGTTTTTTGATGCGTGGTCAGGGTC----TCTTATAAATTTAGCATCTGTCACAAACAAATTCTATTTCCAATAAAGTACTATCCATTTTAATCTCTGGAACATTAGAATCATGTTGGACCTAGACAAGACTTGTAACttttatattaattaatattattGTTCTAAAAAAGAGTAAGTATTT---CTGGAGGTAGTG---------------------------TCCTTGAATTAATCATTTCAGAATTCATAAAGTCTATACAAGT-GAGAAAATGAGCATCCTACAA-------TAAATACAACA--------ATTGTGTTA---ATACGGGGTGCATC--AAAGTGCACCTAACTTGACGTCAGAGCATTAGAGAGCA--TTGTTGAGAAGAACTTATTGTTAAGCTAAGA-AAGACCTAACAATACA-GGGTGTCAGTGTG--AACAAATTTGGGGAAAGGGATCCAGAG-AACGAACTGATACATCCCAGGTACACGGGAAAGGGAAGCAG------GGGGGAGTGA-------------------GGGCCAGTGGCTAAAGGAAGGATGTGGTAAGAGGAAGA-CTGACAAGAGAAGCAGGG--AGAGCTCTAAGAGGCTTCTACTGCCTGGTTTACTGTGTGTATTGACTTCTTGATTAACATGTATTAATTGTGCATATGATGAAGTGTATTTGGAAATATATGCAATTAATACATGTTAATCATCATGTATTAACATGTATTAATTGTGCACATTAATAGCATGTGGTTGGAAACACTTGCACACACAGGACCATGCCCTAACTGAACTAGGTAGCTAGCACTCACTTCCCTCTCCTTAAAACTTCTTCATGTTTACAGCCTTTACGCATCTCTCAtaaagcatgcaatagcttattgtgaatgatagtcacttggtgtgttttggaaaaccacaacttattccttc----------tgcttccattctcattattcaa--tttccttcgctccttttcctt----------------------------------------------------------------------------cctgccttcctaaatctgccttatttcactggacacgatgccctctagttccatccattttgctg-ggatgacagtatttcattcttctttatcactaaataatatttcactctgtgagtaggtaatcacatatcctttaactatttatctgaacactggagctagctccata-tctcagcattgtgaatgttgctgccatagcacaggatgctgatttttctttagcatgctaatttatttcctcgtagatatatgcccatgca-gggaacacaggttaatatcatggctctatttt----ttattaatgcacttcc------------acaatggctgtaataatttatattcctattgaaaaggtttttaagctacctttcccctagatcttcaacagcattttttactttttgtatttttgataaagccatgctaaccagaattgggacatcccctttgtagaattttcttgatggctaagggtatttgaagattcttttcatggggctgtttgacatctgtaGACATGAATTTATGATGGCTTTGTTG----TTGTGAGAACACAGGATAAACATCCAG-GAGGAATTCCATGTAAGCATACAACAAAAATCAAGCAAATTAGAATGCTTAACTAAGGATTGGTGACAAAATGATTGATGAC
s HiC_scaffold_1 141867049 2473 + 233722169 CTCTCTAGCTGAGCTCACTCTACTgatagtacttttctttctccgCTGCCCTGCGAGTGTTTTGAGGACCTGAGAAATTGTCTTTGCTTTGCTCTTACTGTAGTATGGTTCCAGC-CATGAG-----AAGCACTTGAACATAATAACACT---GAACATCTGTTAAATGCTTTC----AGAAACATTCTTCCAATTCTTTGAGGTACATTGATTTctagtaagttttaaaaaataaactcaggtATGGTTAAGTAGTCACTTGTATCAAATCACAAGACTCATGCTCTTATGTATTATGCCAAATATAATGTTAgc--ctaaaaatttttt--tctttaattaaa--------ttaatttccaac--attaa-------aaattctttaggtttccaa---agaagcaaacagaaa------------gcaGTTGGAAAGCAAGAGCAACCAGGCATGCCTACATCCTCACTCAGTGCCATCTGGATTCAGCTGGGCAGGACCTGTTCCCCTGAGCCAGGGCATTTGACTTCCTACTCatg-atattttgtgttttgaCCATTTGAATACTTGCTATAGATcttgaaggcctt--tattttatGACC------CATGCGTTGGGGAATGTGAGGATTTTTCAGTCCTTTTTAAAGTGGAGATTAAAAGGTTAATTTGAATACGTGCTATTGAAAAGA---TACCCGAACTTCAAGTTCTTTTGAGCATATACTTGCACTTGTGTAG--GAGTCTATGCTAATATTGGCATTCTATTTTTATCATTCTCCCAGAGGGTAGCATGCTGTTAAATCCAGAAGGATGAGCCCTGTGTAATGCTGCTACTACCATAATTGATAATGCTGTCCCACACTGTAGTCATGGATTTGTTGCTCATTGTAAATGGCTAATATGTAGCTTATATTGAATCTGATGCTTCACATAATTTATTGCTGAACATATGCTAGATTGCCTAACCACCACAATGATATTAGCAGTCTCATTTCTTGATGCATGGTCACTGTCCAAATTTTATAAATCCAGCATCTATCATAAACAAATTCTCTTTCCAATAAAGTActataaattttaatatctgGAATACTAAAAATGAGTTATTCTTAGGCAAGACCTCTCTCTTTT-TATTAAATAACATTCTT-CTCTAAAAA-----GAGTATTTGGAGTGGGGGGAAAGGCAAATGAAGAGAAGGGGATCTTTATCTTCTTAAGACAATTATTTTAGAATTAGCAAAGCATAATAAAgtagagaaaat--------tacaaaaatgtgTGAAAAAAACATGATAGGTATTATGATAGAGATTTGGGATCCATAGGAAGTTGTGCCTCATTTGATTCTAGACAATtgaagaagaatttttaaagaagaaaccaTATTTAAGGTAAGGTAAGAGCTGAAAGTAAATTGGAGTTAGTGTGACAAAAAAGTGTGGAAGAGTGTTTCTGATCAAGGGGCTCATGTGTTCAAGG--CGTGGAGATCGGAGGCAGCAAGCAAAGGAAGTGAGATCAGTCCCTGTGGTGGGGAGCTGGTGTC---AGGATGGGTGTGGCAAGAAGCAGAGCTCAGGAGGAAAGCAAGAGTACAGCCACGAGAGGCTGATA--GCTTGGTTTACTTtatcttactttgtttttattaaccGGTGTGAATTATCCAT---ACTAACTGT------------------TTGAATCAGGGTAA----CACGTATTTCC---CGCTTATCATGCAC------------TGTTTGGAGAC--------------------------CCTGAGCT--------------------CCTCTTTGTAGATCTTCATTGAGT---------------------------GCATAAATTAGGTGATTATGGACTATAGATATCTGATGTGTTAAGGAATTCCAGATCTTGCTTCTTCTATCCAGCTATGTTTTGGTTCTCATTATCTGAACTTTCTTTATATCCTCCTCCTTTGGCCTCAGTAATCACTATTCTATATTCATATTGACTTTCTAAAGCTTCCACAGACAAGATAAAGAACACAAAGCGCCCATCTTCTTATGTTtaccttatttcatttagcatcatG-TCTTTGGGCCCATCTGTCTCACTGTAAATGACaggattttattt--------------ataatatgt--------------------atatacaatTCATTTTTTGA--TGAGCATCTAGGCTGGTTCCATATTTTCACTGTTGTGGATAGTGTAATA--AACATGGGA-GTTCAGGtatct-----------gttttattccttttggaTATTTACCCAGAAGTGGGGTTGCTGGATTGCACAATGgattttgttttaggtttttgaagaattttcatGCCAGTCCCAATAATAGCTGTATGAATTTACATTCTTACC---AGGGTATATATGA-ATTTCTTCTCCACATCTTTATCACcatttgttattgcttttatttttgctaattGCAGTCAGGTGATATTCCGGTGgtgttctgatttgcatttcactaacgactaag------------tcatttttctatttttgttgtccATTTTTACACAGCAtttcaagaaatgttttttgtgtcttaggagaaaagaaaaaaaacattaagttAGGGAGTCCATATGATTA---AATTGGAATT------ATGAGAAAGCT-------GGGTTGATGAAAAAATTGATGGTGAC

a score=11836
s chr3           154871595 2069 + 160039680 TTTTACATGTAAATGGAGTATAATTTATACCATCAGTGATAATTAGGTTCACTCA-AAAAATTGATTTTTAGAATGTAGTCAC--ACCTAATGCAAAATTATTAGGAAATGTGTTTTCAGCCTTGACAGGATATTTCTGCACTGACACAGATTTATCCCAAGGTACAT-TTAAAAGACTCTTCTAAAATCTAAGCTCGGAGAGCGAACACCTCACCTGTC----CGTCTGTACTCAG---------GGCAACTGTTATTTGATTGGTTTACTAGAAATTGATAAATCAGAGCCCTAAACCTGAATATAACATCCTGCACAATTAGGTACACACCTATGTTTAAATCCAAGG-----------TGAGGCCATTGCATTTTGTGAATGGGATGCTTTCCTTCAAGCAGAACAATTTCTCTTGCCA-CCCACGAAGAATAATTATCTTTGGTAGGAGGAATGTGGTGCAGAGTTTCTGCCAATCACATTGAACTAGGGAACCAGAGCTGCTCTAGTGCAGCGGTCCTACCTGGCTTCAGATGAGCGAATGGAATTTCTCCAGTGAGGAGCTCCCACAGACACAGGGCGTAACTGAAGACATCAGCCTTGATGGTGTAGCGCGTGCACTGTGTGAACACCTCGGGGGCCATCCAGCGCAGGTTCTGCACAGACAAAAGGC-------------GACCAGGACTCAGAAACACCC----AGCGGAGCTGGCTTCTG--AGTCTGCACTAGAGTAGAGAAGGTTCTCCAATGGTCTCAGGCAGCATGGGCAG-----------------------GAAGTTACTGCA---------------GCCTTGATCTTCAC-------------CAATGCA----------------ATGGC-CACAGCACAACT-TTGTGTGCATTCAT-------------------TTCTCAAGAAAACATA-------------------------------------------------ACATG---------------------------------------------------------------------------------GTTGAAATATCATAAAACCCATAA-TCTACAAGAAACCTCCAACATTAATGA-CAAATAACTGTCTCACAGTG-------------------------GTAGCTTAGTTCATTCTCT-------TTCATG-------CTCCCAACTGCCAT----TTTTGCACTAGGTGCCTGCAGGC---TTCAGATTAGACCACCAAAATAGCCATCCCCTTATTCCC---------TTGGCC------TGAGTCAC----ACTGTTTCAGTCTCTGTGCTCCAATTATTTGAGTGACTAAATTAGACCCATAACTGTGTTCTCAGTATAGAGGACAGAGGGAGTCATGGAGAAGTTGCCCAG--TATTCCTGTAATGGGGATAGCTCCCTGGTAAGATCAAGGATGT-GGGCTTTCTTGTGTTTACACTGATGTAAATTTGATTAATTCAGTGTTTGCAATATTTCAGGAAGCAAGATAATAAATATGGTGCAAATCACCCTACTCCTGG---------GCCTCATGTAT---ATGATAGTGT--GAGCTACATTGTTTATATGCGTGATTA------------------------GAAGTACAAATATATAAACTTGGTTTCTTTGCAGTTCAAAGGGTAGAGCGTCAGGTTCTGCCTCATGAAATGACAGTTGCAACACTGACTCTACCACTGACCAGGCAATTTCTTCAAGCTC-------------AGATTT--------TCA--------------GATTTGAGGTTTCCCAGCTCT----------GTGTCC-TATCAGGGGACTTTCCCAA-----TAAGTTTCCCACGGGCAAGTTGGGAAGCAGTATTCTTTAACTCTCTGTAGGAAAGCCCTGTGTATGATACTACCT-CTGATAG-TCTTCTGACAGTTCTGCCTTA----GGAATCAGGTAGAAGTAA-----CCCCAGAACACCTTTATCCCTGGCTTATTATTCATG----GTTCACTTGCATAGACTTTGGTGGCCCAAAGAACCTCAGTTCACAGAGATGA----GACATTTGCCATTACAGCGAGCATC-TTGGAGTGGGCTGTTAGTGCTTGTGTTTG------ATGAGAAGAGGGAGAGTACAAAATAAAAATAATTAAGGGACTTAGATATGGCCTGTTAACTAGTGAGAAA-GAAAACAACACCCAGAATAATTTTAGCAGAGTGCTATGGTTGTAAGCTATGTTGCAAAG-CAAAATAATTAATGTTGCTGGTTGAGGGTGAGATTCAGTTTAATTCTACCCATGAGAAATGC-CTTAGTCAGAGGGTGTCAGTGGTCTACACTG-GGAACTCATCTG------TCAGAATGACAAGATGCAGGTACC---AATATCCACCTAGGTCTATGCAGTCACAGCTTTTAGGTGTCACATTTAGGCctttctctctctctctc
s HiC_scaffold_1 141870732 2371 + 233722169 TTCTACATCTGAACAGACTGTAAGGTATAACATCAATGAAGGTCAAGGTCTTTCATAAAGCCCAACTTTTTTAATGTGACCATGTACATAATATGAAATTAT-------------------------AGGTttcctttgtgttgttacttttTCATCCCCATAtgcacattaaaatatt--tctaagatctAACATCAGAAA----ATACAGCATTGTTTACAGTGTTTGTGCCCATATGCGATATGGCTACAGTTACCTGCTTGCTTTTCGGAAAACAGGTAAGTATGTACAATTTAGGAAACTAT----TCCCACATTTTTGAGTGC----CTGTGTCTAGTTTTCAGGACCACACATATTGGAACAATTTAAGCTCGTT-------TGCTTACCTCC-------------TCTCCTGTTATCCCACTGGGAATAACCGTTTTGGG---------------------------------------------GGAAAAACAGGCTCTTTGGTGCAGCAAACCTGCCTGGTGTGAGATGGGCGAAGGGAATCTTGCTGGTGGCCATATCCCCTAGGCACAGAGTACAGCTGAAGACATTGGCCT---------------TTCACTGTGTGAACACCTC-AGGGTCGCCCAGCTGAAGTTTTGCACCAAGAACAATCACAGGGGTTCTTTGATCAGGGATGAGAGATTTCCCCAGAGTGGTGCTCTCCTCAGGCAGACTCCTTAGAAGTTCCTGAAGCTCTCCAGAGAC------CAGCATTGACCGCATCCATGCTGTCCTCAAGGGGTGCAGTTGGTGCATGCTTGTGTACACATAGCTTGATCCCTATGTGTTCATGTGTACATTGCATGCTTCGGGTGTGTGCACGGTGCACAGCATGTTtcttgtgtgtgtacatgtgtatagcGTTTCTGCTGTGTTCACAGATACATAGTGGGTTTCTGGTGTGTTTACAGTTGCAAAGTGTGTTTCTagtgtgtacacatgtgcataCTATGTTTCTtgtgtgtgcacttgtgtgtCGTGTGCTTATTGTGACTGTTCAATTACTCAATGGGCTTTTTAACCATTAAAGGACCATAAAATTCATAATTCTTCAAAAAA---TCAATATTAACCATCAAGTAACTGCCTTATAAAGTGATTTTCAAAAGAgcaatatttccatatttttattttttctcccttttagtTTATGAGCTCCTTTTCTGGATGCCATACAGGTTTGCAATAGTGAACCATAGATTCATTCAGA--AACCCTACAACTTAGGGTAAACCCTATGACTTAGAGTGGATTAGCCCCCCAGTGAGGCACCAGtcctttttaggtcttcaagttGTAATTCAGGGAGTCACTACATTAGATC----ACTGAGTACTTACAGTGGAGGAGTGAAAGAGCCATTAAGAGAAGACCCAGAATTTTCCTACAAAGTAGATCTCTTATTGGTAGGATCAAGTTTATcctacttccatttttttttctggatgtgCTATTTTTAGATTCTTCTTATGCAATATCCCAGAAAACAAGCCAATAAA-ATGCTACAAGATTCTCCA----TGGAATATTATAACTTCATTTGTTGAATGACATTATTGAAACTTCATTTTCAATGTATgtttttcagttaaaaaataagtttCCATCTTGGAATGCAAATGCATCCATTTTGTAGAACTGTAGTTTAGATCACAGA-CACTAGTGTGGGAGTTAGGAGATGAAAATTCTAGGTCTGGCTGTCCTTTTGACTGggcagatctgcccagctcctccattcttcctggACTTCATATTCCTCAAAGGCAAAATAGATGAATCAGGCTCTTCTAGCTCTAAAGCTCCACGAGTCCGTATCAGCTCATTTTGCTAAATACCTGTGTCTCCT--------GAAGGAACCCAGCATTCTATTATTACTCTTCCTGAAGCCCTGGGTAGAACGCTGGCTGCTGTTAATTCTTTTGAAATGTCTACCTTAGTTTGAAATCATGCATAATTACAGCTTTCCAGGAATATCTTTATTCTGATTATGTTGCTCCTGTGCAATTCTCCCACATGAGCTTTCACATTCCAAATAGGCTGCATTTATATAGCAGATTATGCCTTGTGTCACAACACT--GCATCAGCGGAGCAGGCGGAAAGTATACCCATTTTCCCCCCATGGAGAGAGccatag-----------aatagttagagaactTAAACGAGGCCGCATAACTAGTAAGGAATAAAAACAGCCTCCAAAACAAATCCCAAGTAGTGCTGTGCTTAAAGACTATGTTGCTAGGATAAAAGGATTAATGTAACTTGTTGTTGGTGAAATTCAATTTAATTCCTCTcaacaaaagtttatttagtcAGGGAGTCTCTGAAGGCTATGTTTCAGAATTCCTTAGTggaactaggaaaaaaaatacaaaggtagTGGAGATAAAGCCTTGGGCcactaaaataataatttctaggGCTTGGATTTGGgaattatgctttttttttc

a score=32137
s chr3           154874893 3752 + 160039680 [encoded data, 4211 characters]
s HiC_scaffold_1 141875647 3588 + 233722169 [encoded data, 4211 characters]

a score=67547
s chr3           154879786 3412 + 160039680 AGAATATTTGGGTCTTTGAAATGCCTTTTCCTCCTGGTGACTCCTCCAAA------TCTCTTTTAACCTCA-CAAGGCATG-AACTTTACAAAGTACAGAGTA--ACCCAGGGCAAGATTTACTTCATCCTGCTAAACTTAGAGGGCAGAATTCATGCTTCTGACCTTCATGGCTTTCTCAAACCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaaagagatcgagagagagagagagagagagagagaTTTTAAAGGTTTTTT--------CTCTTTGCTAAGACTGAATAGAAGCTAAATTTCACTGGTTTCTTTTCCATAAAGGAAACATTTCTCCAATCTTAGAACAAAATTAATTTAATGAAGCCATTATGTGAGGATCAGGAGTCTTTTCATTTTAATTGCCTGTATTGAAAAGTTACCTCGAGTGCTCAAATGATTCATAATCAGCTGGTTCTATGCTGTAGCCCAATGCTAATTGTCACTATTAATCAGACTGGCTTGATTATCAGGCTATTTCCCAATCCTGATTTCCTCCTCGG-----TCTGGACTGAAGTTCATGGTTGGTCTTAGAAGGAACAAGGTAACT-GCTATTCTCCCTCTACTCCCACGAAGAGCTTTAGGAAGAGGCCATCGATA-TGCATAAATATCAATTTAGGTTATTTTTCTGAATTCCAAAGCCATGCAATTGCCCGTGTCAGTTGCT-CTCACAAACAGTGGTT-AAGGATACCACGGGCAACCTCTCAGTGTCCTTACTTGGAGAGATGACTGCCCCAGT-GAGTAACCGTAACAACAGTGCAGA---GCTTCCCAGACGTGCTGCAGGCAG--GCTTTCTGAGGTATCCCTGAAGGTGATTAACTCA--TGATTAAAGA-AC-TGGCAAGCAG--TGCCTGGAAGCATTCCAAGGGTTAGGTCACTGGAAGCAGTCAGGCTTC--CTTCAATCTTATCACACTGTGAAAATCATTAGTTTACAAACACAGGTTCCTGACAAGCCATCCTTCACACCCTAAGCCGAGGAGTAGTCCTGGATCTGCTGCCCGCCACACCTCTCCTGCCTGCAGTGCCTGGAGATGGCTGAG---TCTCTTCCAAGTACAGGCTTCTCACTGGGGAGTCCCACCTCAGTGACCTTCAGC--AGTCCCTTACACTGTTCCCTACTGAGCTGAGCGTTGGTCCTGTCACATTGAATGTCAT-CTCAG-ACAGGACTCAAATATCCTGAACCTCTTCCAGTGACTC--AAATGTAGTGGTAGCACACCGACTAAGTCTTTGATATGAACACCATTCACAACAATGTGCTTTGTACTTTTGTTC-CTTTTGTAAAAATTATTCAGTCCTTGGTAGCTACCCA-----------------------TATGTTCTTTTATGGTTTCACTTTGATCTCTTTATGCCTTCAATTTTTGGCTTGGATTCTCTTTGTCTCTGTCTCGGCTTTTTTATcacacacacacacacacacacacacacacacacacacacacacacacTTTATCCTTTTTAGTTCTTCTGGCTATTTAGGCGGTAACTACTGATATCAGCCATTGCCTTTGTTACAGAAGTC-CTGGCTTTGATCTCTAATGTAACAGA--AACACATTTAGACTTGGGGACCTTCATGACAGGTATGTTCATAGATGTTATATGGTGACTAGATTCTTGGGAGTTCTCCTTTATTTTGACtgtggtggtttgaataagaacctgtttcctagttgatggcttcgtggaaaggatagggggagggagggcccttttgcaggaagtccatccctggaggtagttttgagagttcatagctccaccctctccagttcactatctgaagatgtgatctctcagcttcctgctctggctccccattgccacacctccctggccagcagagagtattccacctcaaaccaaataaactctcttccttcagtttatggtg-ttttatcacagtgatagaaacctacccaatacaGGCTGCTCACAGAAAGCTGGTTACAGCTGTATGAGAAACCTTGAGCTCTGCTTAAGAACTGAACTTAGGCAACTCCATTCCTACTCTC---GAGTTCCTCTTTCTTTGTTCCTTGGAGCTCACTATTATTTAGCTAGAGGCTCTTTCTGTGTCCAAAAAGTACCCCAGGATTTCTACCTCCATACTCCAGGGCTCCTACTGTGTCCAAACAATTCTTTGTTAATCTTTTGCAATCTAAGTAAAGCCCATGGTA-TTTCTTA--TAAATACCCTATAGGTATTTTACCACAGTCCCTAGTTCTTCTCAATCTCTAGAGAACCAGAGTTTAGGTCTTCATATCAG----------------TCCTT--TAAACAT-AGAATTCTACCCTT---TCATAGGATGTCATTCTACAA-------------------TATGTTGTAAGGGTAGAACTGACTCAGTCTCCTTCAAGCTGACCGACTGTTGTTTCCC---AAAGGTCTG---GAGAACAGTTATTTTTTTTTCTTCTTTTTTTTTTTCAGTCTGACAGCCCACAGCT--AGTTGGGGATAGCAATGCCCAGGTCTGAACATAATCTAGGTGAGAGAGAGACAGCTTTCCTAAAGCCCAGAATCATGAACTTCTAAACACCAAAAGCCTAATTTCACTCAACTCCTGGAAACCATGGAAACGAAACACTCCAATAAATGCAAAGGATTGCAGAGACTCTTCTCCTCCTAAAACAAACTTCCCTCTGTCAGTAGAAGTATATTTGAAAGCTTAC-CCCAAAGCCTCTGGATTTGTCCCAATGCCACTGGGATTGAAGATATAGATTATGAGATCTGTATCATGCTTCAAACTGCTTATTGAGGGTAATATG----AAAGAGCTCATCCTCTTCACTCAGCATTTTCTCAGAACGTGAAATGCAAGAGGGGAAGGGGGGGGGTGTATTCACCAAGATCACCTAAGCACCCACATGTGCCCCTGTTGGGAGAGTCTGGGGATAAATGGTCTAGAATCCTCAAGCGATTAGTCCCATCTTTGAACAAATGGAATTAGTTCTTGGCCGTTTTAATAGAGATTAGTCTTATGGGGACTTTTAGGTACTAAAAGTACAAAATGGAACATTCTTGGATGCTGAAGTGACAGATAGGG-AATTCCACAAG---TGACAGCTGAGAGTTTATCTCACAAGGTTCCTCCTACTTCAATCTGAAATTGAGGCAGAGAGGAAGCAGTTAGAAGCCTGTATCTACTTCATGG-----TATTTCGCATTCTTCAGTTCGTT---------------GGACCATGCATGAACAGGAACTTCTGGTTTCAAGTAGGGGTCTAGGAAACCTAACTTTGGGAGCCACAGGCAGCCACTGTGGGAGAATC-TTTTTGCACAAAGCATGTGGATCAAAACTG-AAGAATGAAGAAAATGCCAA----------ATAGCTGTTTATGTAAAAGCAACGAGTAGTTAGTCTGATTAATACAAGAAAATTACTATCCCAAAATAACTAAAGAAACTT
s HiC_scaffold_1 141883207 3061 + 233722169 AAAATATTTATCCCTTTGAAGTCTCTACTCCTCACA-TATCACCACCAAAAGTAAAGTTCTTTGAACCTAAACAATGCATGCAACTTAGCAGAATAAAAAACACAACTCAGGGCAAGATTTACTTCACACAAGTAAGGCAGGTGACTAGGATACAT-CCTCTGAGCTTGGGGTCTTTCTT---CCTCAGTAC---------------------CGCAGCTCACTTTCAGAAAAGAATACACTGCTTGCAATGTACTGCGTGTGGAAGTGTCAGTGTCAAAACTTTCAGGTGTTTTCTTGAGTTTCCTTTTAACCAAAAGTGAGTGGAAGTTAAATTCTGCTGGTTACTTT-CTAGAAAGGAAATTCTTTTCTAGCCTCAGAACTGAATTAATTTAATGAAGTCATTATGTAAGGATCATgagtcttttcattttaattgcctGTATTGAAAATTTACCTAAAGTGCTCAGATGATTCATAATCAGTTGGTTATGCACTGTAGTCCAATACTAATTGTCACTATTAATCAGACTGGCCTGATTATTAGACCATTTtccaattttgatttttcttccagAGCTAGATGGACTGGAGTTCATGGT-GGCCTTAGAAGGATCAAGGTGACTTGCTTCTCTCACTCCGCTACCAGTAGGAGTTTT-----TAAGTCATTAAAAATCCATAAATATTAACTCT-----TTTTTCACAATTATGGAGCCATGTAATTGCCTGTGTCAGTTGCTACTAATAAACACTAGTTTGAAGGCACCGCATCCAACCTCTCAGTCTCCTTATTTGAAGAAAGGACAGTCCCAAAAGTGTCAGCTTAATAGCACAACAGCAATGCTTCAGACACTTGGTGTAAGCCACTGTTTTCTGATGTGTCCCTGAAGGTGATTAACTCACATGATTAAAGACACATGGCTATCGGCATGCCTGGAAGCATTCCAAGGGTTAAATCAGTGGAAGCAATTAGGCTTCATTTTCAATCTCATCACACTGTGAAAGTCATTAGTTTACAAACACATCTGCCTGACAAGCAATCACTCAGACCCGAAGCTGAGGAGT---CCTGGATCTGCCGGCTGCCACATTTTT---GCCTGCAGAGCTACATGATGGCTCAGGACTCTCTTCCTTCTGCAGACCTCTCACTGGGGAGTCCCACCTTAGTGACCTTCAGCCCAGCCAGTTGCTTTGTTCTCTACTGAAC----CTTTGCCACTGCTGAATTCATTGGGATGCCCAGTATGGCATCTCCATATCCTGAACAGCTGCTggtgctttttaaataaaatg-caggGTGCCAACTAGACCATAAAAGTAGGTGCAATGCATAGATCCATATTTTGGAGCTTTGTACTCTTTCctagtaaatgtaaaatatttcagagtCACCTAGGTCAACTTCCAGTGGTCAGaggtatattattatatattctcttttgggtctttttgtgcttttgatct------------ctctctctctctatctctctctctctgtctcacccAC---------------------CTCCCCCTTCCTTGCTTCTTATATATAGTAATAATTATTGCTCT---GAAAGTTACCACCTTCATGAGGCATTA------TTGCTGGAGTCTCTGGATTTGAGCCCAAGGGTAGCAGAGAAACACATCTGTGCTT------------------------------------------ACCAGAT-------------------------------------------GAAACTG-----------ATGGCTTC-----------------------------TCTTCCCACATTCTATTCATGCAACTGG--------------------ACCCTCAGGAGCTA-----CTGGAG----GCTCCCTCA-----------------------------------------------------------------------------------CAGTCTGGGGTGATTGTAGAAATGTGATAAGAACTT-------------------------TTTGATAGCATCTG------AAATTATATACTTTGCTTTATAACCAGATT-----AAACCTCTTCCTACATTCTGAGAATG--------TATGTTCCTTGTAGTTCA-----------------------------------AAATAACCCA----------CTCCATA-TCCAAAACACATTTTATGC-------------TGTTGCTCTTTT-CAAGGTTCTCGAAGCCTCTGGAAGTCTGttggttaaattt--------tatttcaccaGGGCATCTCCTCCTTGTCAAAGGCCAGAAAACTCCAGCTTTGCACTCTGTATTAAGGCCTATAAAGTGACATccttaataaaaattagaattgtgTCTTTGCTTCATAGAA----ATGCTAGAAACTGACCCCAGTTTGGCTTTATGTAGCTTGGGTTGGGAAAACTC-------------CTGTCTGCCTTTTGTTCTGTGGAAGAGGCTTGCACGAGCACAGTCATACTGAT------------------AGCATCACAGCCTCCAAATGCATCCAGGATCAGCAGTATACAGAT-TGAACATAATCTAGGTAAGAGAGGAGCA-CTTTACCAAAGCCTCATATCATGAACTTCTAAACACCTAAACCCTAATTTCTGTGAACTCTCGGAAACCATGGCAACAGAGAACTCCAATAAATGCAAAGGATTGCAGAGCCTTGACTTTTTCTAAAACAAACT----TCGGTCTGCAGGAACATATTTGAAAGCTTACTTCTAAAGCCACTGGATTTGTCCTCTTGCCAGTGGGATTGAAGAGGCAGATTATAAGATTTGTGCTGTGGTTAAATCCATTTATTGAGggtaatgtgaaaaaaaaaattcatactcTTCACTTCGTGTTTGCACAGCCCGTGAGATGCAAGTGAGAAAGTG-------GTAATGACTAAATAAACCTAAGCAAAAACATATG---CTATTGTGAGATTTCAGAG-TAAGCAGCCAAGAATCAGAA----------CACATTTT----CATGTGTGATTGGTTCTTATTCCTCTCAATGGAGCACAAATTTATGAGGAATGTTAGGTGC-ACAAAAACCAAACGGAATAGTTTTGAATGCTGAAGTACAATCCAAAGCAGTGTCAGGGGAGATGACAGATATGCATTAatcatatataaat-----tattttaacttcaaattgagaaaaggaggaag------gataTCT-TATTTTGTTCACAGGGTTTTATTCAGTGttactttgtttactttttctgttgcATCGGGACCATGAATGAGCAGAGACTTTGGACCCTGCTT----GACTGTGAAACCTAGATTTGGAGGTCATAGGGAAAGAGCATAGGAGAAACATTTTCCCACAGAGCACATAGg-caaaactgaaaaaatgaaggaaataccAAAAGATATGTGATATCCATTTacataaagttaaaaattagCTAGT-TGATTATCAAAATTAACTTATCATACCAAAAGAATCAAAGAAGTTT

a score=28474
s chr3           154885194 1728 + 160039680 AGTAAAGCAGCCTTGGGCTTGAGCAAGTCAC-CGTAAGCTCACAGGCAAAGATATG---CTATCTCTGGCCAGCAGAGGCTTTGTGCCTAGATAGCTTGCCCTCCAAAGAGCACCCCTCACCTCTCAGAAGGCCCCACAAATAAGTGGTTTTAAAAGAAGTGATTGGTTTCAGGGGAATTTGTATGTGGCTCTTTAGG-AGCAGGGATTAGTA------TTTGGAGAGAAAACCGTTTGCTTATTGGAGTACT-TGACCTGGTTGATTCACCCACAGTCCCTGCATCC-CTACTCAGCAAACACAGGGAGGCTTACTGC-TCTCATTTCTACAGGAACGGGGGTTAAAAATGCACTTAGTCTCACAGGCTTTCCGTCAAGGGCACTTTGAAAATTCAAAAGGAATGGACAAATCTATTTTTTAAAGACTCCCTGAGCCAC--TCAGTGTCTCCGTGGCTGTTGGGAAGATGTACTGCGGA--CTTCCTCACAGACATTAGGCATTCTGTTGGGGGTGGGGCCGAGGTATTAGTCACAGGGATGTAAGGGAAGGGCTGTGATGGCTGAGGG-------------------CCAGAGTGTATGACTGCTTGCAGAGTAAGACAGGCTCTTTCTTGATT-TCTTCTTCCCTCTGCTTAGCCTGCCTCCTACAAG-TGGAATTTGCTTCTATCTTTCTCTCTAAATAAATATTCTCATTTTTCAGGACTCTGCTCAGCATTTGATTCTCTTCCTGATTCTCACATCATGTCTTTTACTACTAGTAAGGCTATAAGATACCAGAGGCTAGATGCATGAGCCAGGGGAGTTACTGGTGACCAGtaaatt-------aattaaaattatttttGAGGGGTGGtgagaaatgatcttatttaacacaggaagacctcaggtttactatgcagatgaagataaacataaactcctgatctgcccctgattctcaagtgctggtataacagacatacgccaccatgcctgTAACAAAGTTTGTTCCTGTACTGAAGGAATACAGGTTAGAAGGCGTGAGAGAGCCAGGGACTTCTTATGTGGTGCTTACATGCTAGGGCAGCTACTCCCAAACTTTTTAGAATGGAATTCTGACATTTTTCAGACTACATTGTTGTTTCATATTTTCTATTAATATTCACATTTACCATTCGAAGTCTCTAGGATTTAAAACCTTAATTTCTG-CTCTTTAGCCTTATC---------TGTGTGCTTTCCTGTGGTCAAGATTTCTCCAGCAAATATTGGAAGAGTAGTTAGTAATTTAGTAATTTAGGTTTAGTCT--ATGGCTGTGCACTGTGCAGGAGACAGC-TTTCCAGAAAATCATTTTTTTCCAGTAAAGATAAGAA---AATGAGTTAAACACTCTCCACTACTTCTCTGGAATAATCTGCTGTCCTGTATTAGCCAGA-------------------------------------CCTCCCT--TGTCTTTCCTGACCAGCTAATTCTAAGCTCTGCCTCAGGCCCAAGCATAGGGCCAGTCTGCTTTCAAAAATTACTCAAATAATGTAGTTCCTGTTGGAA----CTGAATTGAATGTATGCTACAGTGTTCATTGTTACA---TTCAACAATTATTATATGTTCTC--TTCTTGGATAAttttgttttgtttttgtttttgtttGTAGGCAGTATACAGAATGAGCAGGCAAACAGAGTGTGGCTTATAACATAGT--CTGTTTCC--CATGTACATGAAAA-CATGTGTAAGCCACTTTGTGTCTTTTATATCCAAGAATTCGACAAACTGCAGCAGCTCAGGGAGCATT
s HiC_scaffold_1 141887173 1588 + 233722169 AGAAGAGTAGGCTTCGACTTGGGCAAGAAACTCTTAAGAACGCCAGTGAGCAGGCGGCTCTATCTCTGACAAGCAGAGGCTCTGCTCCTGCAGAGCTTGACCTCTGCAGAGTGCCTCCAACCTCCCAGACAGAGCCACAAATAAGTGTGTTTAAAA-----GTCTGGCTTCAGGGGAATTTGTGTGTGACTCTTTGGGAAGCAAGGATTAGTAGGTACTTCAGGAAAGAAAACTGCTTACCTACTGGATTAATCTGAACCTACAGCTTTGACTAAGGTATCTCTATCCTCTCCTTAGTGAAC----GGAGACACAAAACACCATGTCCCTGCAAAAGTGCAGGTTAAAAATGTACTTAGTCCCTCATACTTTCCATCAAGGTCac--tgaaatttcaaaagaaacaagcaaacatatttttaaaaaactgactgAACCACATTCTGTGTCTCTTCATTTGCTGAGAAAAGGTGCTGCTGATTCTTTTCTCCAGACATGAAAGAGTCTGTCTGTG--TGGGTAGAAGTATTAGTCACAGGAATATGAGTTATCAACCATGACAGTTTAGGGTTATTCTAGCTCTTTTTATCCATGCTATGAGACCATCCTCAGAATACTCCTGGCTCCTTCTCACTTCTGTCCTTCCTTTTGTTTACACTGTGTTCTCCAAGTTTGAATTCACTTCCAACTTTTACTGTAAAtaaatttctctgttttttaggATCCTGCtcgg----ttatttttttttccatgtcaGTGTTCAGGGACTTGTTCTCAATAAGTTT-TAAGGCCCCATAAACATGAACCATGAGCCA-GGAAATTATTAATAACCCATAAATTCTTACTGAACTCAAATTATTCTTGA----------------CTCTT-----------GAaga-------------------gtgaagagaaa---------------------------------------------------------------------------------------gaaagta------ttagACAGCGTAGGGTATTGGTGGAC-----------AGGTTGCATACAGTAGCAATTTGTCCTAAAGAC----AAATTGAAATTCGTAGTTACTCAGAATaaa---ttgtttcatattttctataaatatccaAATATGTGACTCAGAATCTCTGAAACTTAACACCTTAAATTTTGCCTTTTCAGTTACATTCCAGGAAAATTCTTActttaatttattctat-tttctccAACAAATATTTGAGTAATATTT-------------CTTTGGTTTCTGCTACATAGCTGGCTATTGTGCAGAACATGGCTTTTCCATAAACTCACCATTG--CAGTGAACATTAGGAATGAATGAACTAAACACTCCTCACT-CTGCCCTGCAATCACGGACTATCAAGCATGAACCAGGTCGTTCTGCCTAAAACTCTGTGCACACTGGCTGTATTCTTCCCTCATGCCCTTCCTGA-CAACTAATTCTTAGCTTTGTTTGAAGAACAAACTCAGGGATGGCTTGCTTT------TTGCCCAAATATTCTAGCTTAGATCAATAGCTCCAAGATTGAATGCATAGAACACTATTTTCAGTCCCACATTTTTATAACTTGCATATATTCTCAATTCTTg--tagctttttttcctttttaat----------------------------------------------------atataGTCCCTGTTTCCCTCACGTAGGTTAAAGCCATTCCTAAATCATACTGTATGCTTCACCCCCTAAAATCTGGCAAA-TAAAACAGTTCAAGAAACATT

a score=15730
s chr3           154893685 492 + 160039680 gacaGGATGGCAGGCAAATTCTTAGTACTGGACTCTATTTCAGTGACAGATTAACTCAAGCCATGAA--ACGTACACTTCTGTTTATATTTTTAGGCTATGAGCAATGCTCTTTGCTTTGAAAAATTGCCAGTTTTATAACATTTAACATTCAAATAAAGATAGGTAATGTATACTGTACTATAA-AAGCTTTTCCTGAAAACACCCCTGGAATCCAATATCTCTTCAAGTAAGTTACTGAAGATTCATGTTAGCATCGAGAACTCTAAAATAAATTATCGCAAAGGAGAAAGAAGATTGAGTGAAACTCCCTAAATAA-ATTCAAGACAGTAAATAGCAATGTCTCAAGCTGTGTGGGAG----TTTGCCTCTTATTCTCTGGAGTCCTGGGGGTGGAATTCCAGGGGCTGGTCTGG---ATCCACACCAGAACAAGGCCCCTTGGTTCACTCGTGTTCCCTTGCTCT-TCTGGTGCCTTGACTCATGGAATAGAATGGCTGC
s HiC_scaffold_1 141896856 479 + 233722169 GAGAGGCTGGAAATCAAGTCTTTAGT------------TTTAGTGCAAGATTAGGTTGAACTGTGAATGCCAGAAATTTCC-CTTATAATTTTAGGCTAGAAGGAATGTTCTTTGCTTTACAAAATTGCTGCTTTTATAACATttaacattcaaataaaaatagataattcgCATTGGACTAtgataaaatttttctgaaaatactttTGGAATTCAGTATCACTTTCAATAACCTATTGAAGATTAATGTCAGTACTCAGAACTCTAAAATATATtgccacaaagaaaaaagaag--taagttTTGCTGCCTGAATAATGTTATTTGCACTAAACAATGATGTCTTAAACTGGAAAAGAGTTTATTTGTCTCTTATGTTCTAGAGATCTGGAG--GAAGGTCGTAGGACTGCTATGATACGTGCATATAAAATTCACACTCTTT-------TCTTGTTGCTTGATTTTCTCTGGTGCC-TGTTTCATGGTCTAAAATAGCTGC

a score=38561
s chr3           154906852 1589 + 160039680 CCACTTTTTGGTTTCTAGAGAGAAGTGATTGATTTCACTGTACACTATTTTTCTTTAGGGCAAAGA-------------------------TAATGGATCGTAAGGAATA----TTCATAGCAGAACTGCCAGATTTT-----TTTTATTTTGAGAGAAGAAGTGTGC--------ATGATGGGGA---ATCTTTCTTCAATGCATACGATGCA-TTTGTTCTCGATTCGACCTACTTGTATAACCTCTTTTGGCTGCATTTCTACCGTGACTATTT---ATTGAGGATGTTCTCT---GGTGGATGTCCACAAAAGCCAAAGAGTTTCACCCA-GGTTATTG--CCTTCTCTTTAAGATAAAAGGATTTTTATCAGGGTGGCCACACTTAGTTGCATTCCAAATGCTTCAAAATGGTGATAATTAGCATTTAAATAGTACCTCACCTGTTCAGAAG--TTAAAGCCATGCTCACTACCTAATGGAACAGTCACACTATTATCTTTCATGGGAAAAAAAATCTTCAAATATAATATGCTATGACATATGAAGATCGCAAGT-GCCCGGGGGTGAAAGCATGGCAGATGGCATGCATTT-GCCGGCAACTTCAATTTTATGGTACGGAATTGAAGCACAGGCAGTTAGTTGTACTTTTCCAGCCCTAAAACTTAGCATGCAGTGTACAACTCATGGCACAACTACATG-----GACAGAAATCCTTTCCGCAATAA-CTGCCATTTGTCAAGGAGAAAAATCTTTTCTTTTCAAAAGTGTCTTAATCGCCACAGGACAGGACCGAACACTAAAGAGAATCAGTCCGTTTGAAACTC--AGTGAGATCATTCAAAGCCAGTCTCAGGCTGTGCTCACTCATAAAACACTCCTGATTTTTGAGAGCACCATAAGAGAACAGTTAGGCC-------------------------------------------------------------------------------------------------------TTCAAAGAATAAATCTCAATTCAAGATCCCCACTGGCTCCTGACAGCTAGCTCATCATCTTCCCAATACACTACTGTATCTTGAAGGAATGCCAGGATTTTCCCCTTTT---ATTCTCTTCAGAGATGCCAGGTTTATATTTCTGGTCTTCCATGGTTTAATTCTGCAGCTGATGAGCTCATAGAGAAATAACAGAAGGTGGTTGAAACAAAGCTGATGAAAGAATTATGGTACAACTTGAAGTCTATAATGCAATACTGATTTAAAGTAGAATTTTAAAATTCAGTTAAAATTTAATATACATTCCTATTTCTGAAGAGACCAAACTCTATTTTATCACCAGAATTTCT-ATAGTCACACAGAGAGAACGTGAAGGGTGTAAG-GAGTAGTGGGTTGGGCCTGAGTGCTGGGTAGGGTGGGTTCTCTGCTCAG-TTATCACTAAGTAGCTGTGTAATTTAAGAGAAATTAGCAAGTGTCCCTGGGAAGATGCTAGATCTACAACTTTAAAATAAGAAATTGAGTATCAATAGTCATGTAGGTTTGGTGTTTTGGTGCCAGTTTCTGTAAGAG--------------TAGGAAGGGCCTTTACTGATGCGATTAGGAACCTGGGC-TTCCATATTCTGTCAGAATTAACT---CACACAAAATCCCACTACTCAGTTCACTGGTCAAGAATTATTTGAACCAAATGTGTGTGTGTGTGTGTTTAATTTATCCTTTAAATTAGTACTGTCCAACTA
s HiC_scaffold_1 141903320 1641 + 233722169 CTATTTATTAACTTTTACAGAGAAGTCATTATTTTTA-TCCACATTTCTCTTTCCTcagtgaaagaagtaaaaattcaatCAAGGAAGGTTTAATGAAAAAGATGAATTAGAATTTCACA-TAGAAGTCCCAGGTTTTAAGACTATTATTTCTGGACAAGAGGCGAGCTTGTGCCTATGCTGAGAATATATCTTTTCTCGA-ACATATCTTACACTTTGCTACCTATTTGATCTACCCATTAGACTCCTCTTGACTACATTTGTACCAAGAAATTTTCTAATTGAGGATTCTACCTCAAGGTTGATACCTACAAGAGTCAACAAAATTTGTCCAcaattattttcccttctttttagaTAGAAAGGTTTTATCTCAGGGAATTCACACTTAGTTGCTTCCCAAATGGTTTATAATGATAATAATTAGCATTTAAATAGAAACTTACCTGTTCAGGAGCCTTACGGCTATGCTTATTATCTAATGGAACGGTCACACTATTATCTTTTATTG----AAAAATCTTCAAATATAAAAACCTAAGA--------GATCGTAAAAAGCCCAGAAGCTGATAGTTAGC-GATGCTATGCATTTTGCCAGCAACTTCAATTTTATGGTATGAAATTGAAACACGGAAGGCCATTAGTACTCTCCCAGTCCTGAAAGTTAGCATGCAATGTACAATTTAAGGTACAActacacaaagacaaaaaaaatacctTCCACAATAACCCGCCATCTGTCaaggagagaaaccttttctTTTCAACAAGCTCTTAATCGCCACAGGACATGAGGGAGCACTGAAAGAAATCGTTCTGTTTGAAATTCTGGGTGAGATCGTTCAAAGCCAGTCTCAGGCTGTGATCACTCATAAGACACTACTGA-TTTGGAGAAAGTTATAAGAGCGTAGTTAGGTCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttc-----------------------------------------------------------------------------------------------tttctttttttaaaatacacttcTTAGATGCCAAAttca---ttctagtttttctttgctc-attttgcaTCTGGTGAGCACTTCAGGAAAGACTAGACAAAGTTTGAAACCAAGTTGGCAAAAGAATGGCAGGATAACTTCAGATGAAtggtaaaaagcaaataaaatgagaactttcctattttattaaaaattaagtatgGTTTTCTATTTCCCATGagatacacatttatttt---tcttgtgtttttgacAACCATGACAAAGGGTCCTGCAGTTAGGAGGAAAATGCTAGTTTAAGAGTCACAGACAGATTACATGAGTGCGCCTCTCTGTTTACCATTAACTAGCAGTGTGATTTCAGGGAAAGTAACC----TCGCTGGGAAGATATAGGATCactatttttaaagtaagaaattgaaagtttctagtta------tttcatatttttatttgagtttCTGTAATAGAAATCTGAAACTACAAAGAACTGCCTTAACTGA---GATTAGGATCCTGGGTGTTATATACTTTATCTGAATTAATTAGCCATGTagcatttcatttttgtatttatcaGTCAAGAATTATTCTAAACAAAT-TGT---------TCTCTAATTCATATTATAAATTGCTCTTGTTCAACTA

a score=23720
s chr3           154913560 1706 + 160039680 TCTTGGGTGAGACATACAGTCTTTCTCCATTTCTCTGTGTATATCTTAACTTCAGAGGCCAGAAGCAGTCACTGTAGCATGAGTGGAATGGCGCTGGGGTGGGAGCCAGGCTTTTAATAGAGCA-TATTACTAAA----TAGGACATAAAGAAGACAGGAGAAGATTCTGCTCCTCACTCAAATGGC---AATGAGCATAGAACACAGGCACCCTGCAGCAAAACGGGTATAGAGAGCTTCAAACTCAA---------CTACTCCTCATTATCCACGGGAATGTGATTAGCATGGAGCTCAGCCAAGTCTTTCAGTGATG-CTCTCACTGTCTGCATAGGAGAGGGCTTGAGGAGGAAGCAGAATTCCCACT---CTGTGCAAGCGCTTCCAGGGATTCACGTAGGGATGAAAATCCA-----------------------------AATATCTGTCATCGCA-----AAAGATATTTACCCACCATCTTACTTTCACCTTGTTCATATGGATGTTTTAGCATCAGAAGCTAGCACAGTACCA-------CTAATAACTTGCTATTTGTTTGAATTTCTAGGCTGAACAAC--TCGAAGGCCACTTTGTGTTCAAGTGTCTAATTACGTTAGTGACGAGGTGATCAAAGTTTCGC-----AGCTGTGCAGAACAGAAACACATGTTATTTTAGAACTAAAAAAAAAAATCAGAACCAGATCTTGCGCTGTTTGCTGTATATAGACTTGAACCCAAAGTATAGTGTTGTCATGTTAAGATGGTTTGA-----ACTGTGCCTTTTGAGTTCCACTTTGT-GTAATTGC---TGAGACCCCCCCATCTGAAAGGAAATGTATAAACCGTCT--TTGGATATGGATCTACTTGTAAATGCAGAAGTCATGATCAGTGCCTGTTGATACAGTGAGTCAGTCCACTTGATTCTGTGCTGTTTATATTAATTGCACTTGGAGAATTCTTTAT----------ACAGGGCACATTAGT------TATTACAAACAAAAATAAATCACAGAATATA---AAGATGA----GACCTCTGAGTGAT---------TCAAATT--TAAGCCTATTGTTCAGTGTTCAGTCTACAGACCTAAGCCTTGTATTTATCTCACGGTACCATCTAAGGTAGAAA--------TATTAATAAT---GGAACTGTACTAGGTGCAGTGTCTTTGATCAGAACCCTGGCAGGAACAGAGGCTCCTA--TTGGAGAATT----TACTACAAAAGCAA-------------CCTAAGAAA---GGTTC---------------------------TGAAATAATTGCATAGGATTTTATTGTTTCAATTTACATGGGAAAGACAATTTTGGTCACATCTGACTCCTTGTTTCCTTAGTTACTCTTTCTGTGTTAG-CAGTTATTATCTTTC--AACCTCCCAACAAAAGAACTGTATTTGAGCAATTGCCACTCCAGGACCTGTGTGGAAATGAGC-----AGTCTGAACACATGCCCCACCCCAGTCCCCAGCTTATTAAACATGCTTTTCTA----ATTCACCTGGGAACAGAGTGCTTGGCTTCCCTGTAACTGAGGGGTAGGAGTCACTAAACAATTGAGTCACTAAACAATTGAGGCGATGTTTATGTATTTCCTTTTGAATCAAAA---CCAGATGAGTGCACACCTTTCCACCTACAGTGTTGTTAAAGTATCAACACC-CATATGAATAACAATGGTCTGAGGCATAGAGTAGAGTATAAAAAACAGTAAGTAAAAAAAATTTTAAAACATCTTACTTTGGGCTATGAATATA-TTTAGAAACATTTTCTTTAGTTCACTACAAAATAAA-------AAGCTTGTTAGTACATGAAAA
s HiC_scaffold_1 141911729 1775 + 233722169 TCCTAGATGAGATGCA-----TTTCCATATTGCAATTTATATTCATGCAAATCTAAAGTATGAAATTATCAACTTTGCTCAAACAGAATTTTATCAGGGTGGGGGCCAGGCTCTTGACCGAGAAACATTAGTAAACAAATAACATAGAAAGAAGACCAAAGAAACTTCTGTTCCTTCCTCAAATGGTGGTAATGAAGCCAAGACGTAGGTCAAATGAAGCA----TGAGAAACAGAACTCCAGACACAAACACTCAGCTTACTCTTCATTATCCATGGTAATGTGATTAGCATGGACTCCAGCCAAGTCTTCCGACAAGGTTTCTCATTAACTGTGTACAAGAACTCTTAACAAGG-AGCACAGTTTCCATGGGACTG-ACATGTGGTGCCA--AATTCATATAAGTATGAAAATCCAATCAATTACCTAGGAGTTCCCCCAAATACAATATTTGGCATTGTATAAACAAAGATGCTGa--------cgtattttca--tttttcatgttgaTATTTTGGTACCTCCAGTCAGCAAAGTGTTATTCCTCTCTGATAATTTGTCATTAG-TTGAATTTATGGATCAAATGCCTATTGACTAGTACTTTAGGTATGA-TGTCTAATTAAGTTAGTAATCAGATGTTCAAGGATTGGTGATAAAgccaaagagaagagaaacaaatgttatttcagaaat---aagaaaattcaaaaaaa--------------------atgcaaactgaatCTGAAACTA---TGTTGACAAGTTAAAATCACAGAAAAGAGAATGTGTCTTGAGAATTCCTTTCTTTGGTAATTACAGATAAAACCTCCCTAT---GAAAGAATGATACAAATTATTTTGTTGAGTAAAAGTCTatttaaagacata-aaattacTTCCAAAATTCATAGATGAGAGAAGTCAGATACGTTGACTCAGTGGTGT---------TTTCACTTGggtgattcttttttatttttttctcaagacgaagtcttgctttgtagctcaggctagctttgaactcactatgtggccaagctggccttgaactcaaggtgatcctcctgcctcagcctgctgaggctATGATTCCAGGT---GTGCACAAACACATGC----TGCCTCTTTGATAATtctgtttaaaggaaaaaactataattgttaaaaatcaaaaaagtaaaCTAA----AGTATGAATGACGGGAACTTT--------CAGATTACTTTAACTTGATCAATTTCTATATTACAAATAAAAGCATTGTATTATTCCTATGAAACTGggttctttccttttattgagCTCCTGTCTAGATGAAAATATTAC-CAGTGATCTAAAGCTTGGA-----ATGGCAAAGATGGATCTGATCACATTTgacatcttatttcttttgttatttcctGTGTTTTAGTCTGTTATTATCTCTCTTAACCTTCATATGAGTGAATTATATTTGAGAAATTGCCTCTCTGGCA---------AAATTAGCACAGTACTTTGAAAATACTTCCC-------TCTGTAACTCATTAAATG-ATTTTTCTATACTGTTCACATGTATATGGATTATTTAGCTTCTTTGTAACTGAAGAGTCTAAGTTACCAAATGATAG------TAAGC-----------TATACACATGTTTCCCTTTTAGTTAGAAAATATAGACAGGCATGTGACTTT-CACTGATAGTGTTATTAAAGATTCAATACCGCTTGTCAATGACAGTGGGCTGAATTATATAGCTAAGTATCAAAAgcagtaaat---aaaattttgaaaagttatttctttctgctgtgaataaattttaaaaatcttatttttagcTCATCAC--AATGAACCATCTTAGGGTTGCTATTACTTAAAAA

a score=30505
s chr3           154920091 1192 + 160039680 CTTTCTTG--ATGGACGCAGCAGGTCTG-----TGTAAAGGCTGGCTTTTATTTTCACTAAAATGTTCTAT--TATCTTGATTCAGAGACGATGCTTGTAAATAATTTGGTTTTTCT-TTTAAGCCTT-------------TGTCCCTCTCTGTGCCCA-----------------------------TCTAACCCA-TTATTCCTTTCTCTCCCCACAGTTTTAATTATCCCTGATATCATCTCCAATGTAATTGAAGAAAATTGTCTTGCAATTATGAGAATAAAGGAAATATCAAGCCGGTGCCCACTCCCTTTCACCTGTGTCTGTGTTCCACATTGCTCATTGTTTGCAGATAATCGGTGTGATGAGAGCTGTGCCTACTATTTATTTACTGTCTCTGTAAGGACTATTCGTTCCGTGTCTTCACAGTGCC-------CCCATGGAACACAGGGAAATAGCCACAGAAGGCCTGTGTCTAAGCACAGAATACTCCCAGAACTCTAGCTGTAAC--CAGTTTATTTAG--TTCCAGAAGACA-GTGTGTATTATCTAATCCTTAATTATGCTCCCAAGC-TTTGCAAAATTAAAGCTTCAAATTAAACATTTTACTGACGAAGCTCCTCTGAAAGCCAGACATTTGTTTCCAAAATGATAAAATGGGAAAAGCAGGCACTTCATGTGGTACTAGGCCAAGAAGTCAACTCACATTTATTTGAAAGTCTCAGAAAATAGAAACTAAGAGATCTGATGTAGGAAGGTATGGAAAGCAGGAAGTCAGTCAAGTGAGTTATCCTGAAAGAGAGGATTGTCCTTATTTGTAAGGAGTCCATTCCAGCAAAAGATTGA--CAGGTACTGAGGCATCTAAAGCTCCACAGGTAGATGGTTGCTC-------CAAAACACCTCTGGTA---------GGTGGAGAATGGACACATTCTGCTGACCTAAG-ACAACTCGGAATCAGAGAT-GACAGTGTA----------CCGTCAGGTCCTGGGTGCAAGCAATCCACTCTCATTCTGCACGTTTCTGCAGCCAGTTCCCAAATTAACTGAAAGGACATTGCATGCATGGTCGAG---TTCTATCCTATAGAATCAA--TTTCTTCTCTACTAGAGCAGTCCACCAGCCACATGGGATCCAGCACCCCCTGTCTTGCATATTCAGTTCAATATGCAGCAATTCAGTTGCAACCTCCTCTAG-------------TGGTTGCCTAGGACTTTGAGACTTCCTGTAAACATTCTACTGGCTGGGTCTGCTGTTCTTCTTACC
s HiC_scaffold_1 141917816 1249 + 233722169 CTTTCATGTTATGGGTGCACCAGGTTTGCTTGgtataaa---ttacttttattt-cattgaaaaattaaatgGTATCATGATTCAGAGAAAATGCTTGCAAATTATTTGATGTTTTTACTTAAGCTTTCAAATACTTTCTGTGACCTCCACTTTGTCCAGAAGCCTTGATCACCTGCCTATATCTCTATCTAACCTActtattcctttctttctccactCTTTTAATGATATGAGACACCAG----AATGAAATGGACGAAAGTTGCCTTTCA-TTAGGAGaacaaaagacatataaaaccagcACACAGTGCCTAGCACTC------------------------TGTTTCCTGCTAATTGTTACAGTGAGAGCTGTACTCATTATTTATTTGTCACTACCATAAGGACTGTGTCCCCTGTCCCTTAACAGTACCTGGAGTGCTTGTGGAACATAAG---ACATCTGCAAAATGTTTGGGTTTAAGCAGAAAACGTTCCCAAAATGCCAGatgaaaaaatagtttattttgcaTTCCAGAACGCACTTACGTATTGTCTGAACCTTAATTATGCTTCCTAACATTTGCAAAATTGAAACCTCAAATTAAACATTTCATTAGTGTAGCTCCTTTGCAATTCATCCATTTGTTTCAAAAGTGATAAAGGGGGAAAATTACTCATTTCAGGAGGTACTCGGTCATAATATCGACTCACATTTATTCGAatgtctcagaaaatagaaactgCACAGTCTGTTGTGGGAA-GCGTGGAAAACAGCAAGTCAACCAAGTGAGTAAACATGAAATGGAGGATTATCCATATTTGTGAAGAATCCATTCCAGCAAGAAATTGAATCAGGGGCTTCTGTATCTAAAGCAGTAGAGGCTCCTGGTGGACCCTGGGAGCAGAGGTCTTTCAGTAGAGTAGACCGGTGGTGAGAAAGCACGGTCTAGTGACCTGAGCACTAATCCGCAGCCCCGATGGGGAATTTAAATCCCACTTCTGTCACTTACAGGGTTTGAGTAATTTGTTGGAATTCAGCCC--TACCTCTTCCAG-GCCCATACCAAGTGCAAGGGCGTCGCTGACATAATTAGATCCTTCTATCCTGAGCCATCAAAGTTTCCTCTGTACCATGTTATTCCACGGTGTGCACGCGCTATAGTAGCTCCCATCAAAAATCTCTTGCTGAC---------------CTGTCGCCTCCTCTAAGAAGCCACTTTCTTAGTTTATTATGGCTTTAAAACTTCTCGAAAATTTTCTGTTTGCT--ATTTTCTGTCTCCCCTTCC

a score=46514
s chr3           154922276 3572 + 160039680 GTGTTTATTTTGTAGCT-----------------AATTTTCTTTTGTGAACTAATTTTGAATTGTCCCAGTAAACTTCCCTATTTTGGGTTTAACAGCCCTTAGACCAGGGTGGACATGGATGTATTCTC----CACAGAGATTATTTGATGGACAACTTTTCACTTTCTAAG-------------------------------------------GTGTTTCTTGCACCAACCTGAGTTATATTGTCTACTGGTCCTCACTTTGATAGTCTAGATTATAAATGATT--------TGTTGTATCAGTTTTTATTAGAATTTGCA--GATATCTTCTCTCAC------CAGTGTAACAAAATAAATCA---TTTTAGCCA------------------TTTAGGGCAGCACACTGAACATCACATA---CTTAATGAATGGAATCCTCTTTGGACACATCATCTTCTTCTTAAATCTTATATTTATTAATTAGTAAGAGTTATGAGATGACATGTTTTTCCATCAGTCTTT---GTTGTGGCACAGACACTATG----CATTTTGCTGGTCAATGT-----ATATATGG-GATAATCATCAGAAGCTGGCACTATCAACAT-------ATCATATCAGAGACTGTGAGAATAGACAGAGGGCAAATGCATTTTTCATGGAATTGCATGCTCTTCATTCCGGGTTCTGTTCACAGTCTTGACATCAAACATTATCATCGTTAGACAACTACCTTGACCTCAGTGTGTGCTGGGTGTGGATTCAGGGATAGCTTTTGAAGAAAACTTTGTTCCTCCAAT-CAGCTATGTTTATTTTTCT---TTAGCTGGAATTTATTTTGACATCCATAATAAGACTGTCTCTTAATAACAATGACTCTTCCTCCTTTTTAACATAATGTGAAGGTAAAATATTTTTTGTTCTTGATGGGGATAGTTCCAAGTCCTGCAACTTTGTGTATCTTGCTTAAGAGAGTTTGCTCTTCTTGATTCTATACCTGCATTCGACAATTTATCTTTTACTCATTTTAGAAGTGGGAGGGGGATTCCATCTATTT-----AAAGGCTATTTGATGAATTTAAGCAGATATGCAATCTTGTGAAAACATTAGAATTCTAGTCTCAAGACAGATAGCACCATTTCAAACCCAGAAAGA--TTCCTTGACCCCCTTGCAACGCATTCAGTTCTCAGCCTTCGAGCCCGGCAAACCATTCACCTTGTCCATTATAGGCTAATCTGCAGCCTCTCAATCTCAATTGAAGCTGTGTGCT-CAGCACAGTGCCTGAGCTTTTGCTAGCATG--TGTCTAGGGCTGTGTGCTCAGCACAGTGCCTGAGCTCTTGCTAGCACGTGTCTAGGGTTTATTCTAAAAGACTGTAGCAAACatatgcacatgtatgtatacatatatgtgtgtgtatgagtgtatgcatgtgtatatatacatctgtatgcatatttctatgtatGTATGCCCTATGTGTCCTATTCTAGGTAATTTGTTTCATATGTCTGAAGTGGAATTTAGTCAGAGAATTGTGGCCATACTTATGTCTATAATTTAGATAATTCTGCTCAATTAGGAAGAGTAAAGAATGACTGAGAAATGAACAT------------------------------------------TTTTCCTGTGAGCAGAAGGTGTCATATACTTGTGCTGTTGAAA-CAACAGGCATATTTTATAAAGAAACAAAAATGCTTCTTGGAGA---------GTCACTCCTGAGTCAGtaaaaaattttttttaaa---tttCCATTAAAGACATTCAATAATTCATTTTGCTTAGGAAATCGAGCATCACCATAAAA--ACATTCTGAAATGATGAATTTAGACATAAGAACATAACAAGTGCACGGAGCCCTGCCACTGTTTCTG-CAGGTTC-CACGAATCTGATTTGGGTTCCCACACTC-TTTTCACAGGAATATTTAAATAATTTGACTGTGACAAGCCAAACTGTTTTGAGACCTCATTGAAAGTCAAATGAAAACATTAATTGCATGCAAAAATATTCCAGTCAGGCATGGAAATGCTTCAGGTTAGGGAATAAATATGTTGCCTATGAGAAGA-AAAATCAATTGACTTAGAAAAAGCTAGTGCTGGCTCAAGTCTACACGGTCAGCATTGACTGAAAATCGCTAGGGTTTCAGGGCCTTGT-TTTGGCTTATGAATTAACAGACAGCCTTGAGCAATGTCCATACTACACAATAAGTTTGTCTGACTAACTTTTTGCCTGAGGAAATTA--GAAATCAGATCACTGGAACTAATTAGTATTTTGCTTTTCACTTTTACCTGCTTCCCTTATGCAACCTTATTTCATTTTGAGGAAAGATAGCTAGCGACTAATAGGCATATAATTATCCTTAACACA-AAAATACTCAGACTAGTGATTTATGCAATAGAAATAGTAATTCAGAaactaactaactaactaactaactaactaactaactaaGCAACTTTCAAATCATGAAATACCACATTTATATTGAGCAAGAATTACATTCTCATTCCTGCTCTGAATTCTCCAAAGTAAGATCCATGTGGAGAGATAAACTGTTGCA-TACAGTCATGGTTGTTCTA---------GTTAAATGGGATGAAATATCAAT-----TTATACAATGTTTTGGAGTGCATGCCTATACTACCTGGATAACACACTTAGCATGTCACAAACTTTATTGTCTTAGTAATTTTGTTAATATCCCTATAAGCCTTTCAGCCATTTTCTGTTTAGAAGACCCCCT---CAAAATTAGGAATATTTAACTAGATTGGATATGAGCAGCACTGA---------------------------AATGGATATTATTCTTATAGCCTTTGGGTTTTTTATAATTAATTTCTTCCTGAACTTGATAAATATTAAATGAATGTTTACTAAGGCACTGGGAATAAAATCGTACAACTTTCACAGTACCTACCCTGATAGAGAGCGTCTTGTCCAATAGGG--ACACTGTCCAGTAC------------------CTACCCTGATA---------------------GAGAGCGTCTTG-----------------TCCAATAGGGACACTGTCCAGTACCTACCCTGATAGAGAGCGTCTTGTC----------CAGTAGGGTAAGC-----------ACTGGAGCTCAGAGTGATTTTAGCTGACTGAGGGATGTTAACCC----------------GAAATCAACATCTGCATGA---GAGATGGGTAG------------CCTGTGGGAGGCGTGCCTGGA------------GGAGGCACCGGGGT--------GAACGAGAATAAGTCAGGAACACATGAC---------CTAGG---GTGGGATCTAGG----------------------------------------------------CCTGGG---ATGCTTTCATAGAGA---TATAGCAAAGCAGAAGAGATAGAAAGTTGAAGGT----ACAGGA-AATTCTTAGTTTTTCTCTCTGGTTCTGCAGAGCTGAGG---AAGTTTGGCAATTAACAGCTCATTAGCCTCATATTTAGGATACAAA-------------AGAAACTTTATCAAGGTTAATAAGAGTTCAGTGGGAAATGTCTGCCCTCAAGGCCACCCACATCTCAACAG---GAGGCTCAGTGTATCATTCTTATTCTTTATTCGAAGTGAGAAAAGAGAAATTAAAGAAAGTGGAAGCGTCAGAAGATGTCTGTGATCCTTAGTTTCCTTCAAAAGCCATACTGAGTCTGGAGACCTCCGGAGGCCAAACCTTCCTGAGACCACAGACAGCAG-AAGTCTATTAAAATGGGCTCCAAACTTAAAGAAAGGGGTCACCCAAGATCCCTGACTGTTTGCACTGAATGGA-CTAATGAAAGCTGTCTGCTA-CTCTAAGAATTGAGACATAGG--ATTTCTATCCCCACTGGAGAGGGAG
s HiC_scaffold_1 141936942 3655 + 233722169 GTGTTATTTTTGAAGCTTTAATACTCTCATTACAAATTTGCTTCTGTTAACTACGTTTGAATTGTCCAATTCAGTTATCTGAATTTGGGCTAAATTTACCTTTGAttataatgcaaataaaaatattttcactgctTAG---CTATttgatgtatatatttttatttgttaggaCTATGTGAGAATGTCTCACAGTTGTAATTTTTAGGGAAGTCTGAGTTTATCTTTTTTACATGAGTGATGCTGTTTCTATAATCTGGCTTTCATGATCTCGATTAGAAGCTAATATTTTCTATGTCGTAGCATTATACATTTTAGTTCTCATAGATACACTCTTTCACAGTCgacattttataaaaggaaagagattttCTAGCAGCTTCTACCTGTCTCATATTTTAATGCTGTATATCTAGCAATACATTGCTTTTAATAAACTGAATGCT-TCTGGGTTCA-----------------CTGATTTTCAGTAAATATGCA----TATGTGAATATAATGTATTTAATCAGTGTTTTTGGGTGTTGTGTAAATACTCTGAGACTGCTTTGTTGTACAATGTCTTTCATGTTTGGCTAAGAATAGAAGAAGCTGGTATTG--AACATCCTTGGAATCAGACTAGAATCTTCAGGAATGGACAGAAGGCAAATGCTATCTTTAAGAAGATCTCTCATCTCCTTTCCTGTCAGTGTCTACAGGCTTTG-ACTGAATGATAACATTTGCAGAGATCTGTCTTGACATTAGTGTGGTACAGATTTGTTTTCATTGATGGCATCTGAGCAAATCTATCTTCTTCCAATTCAGTTGTGTTGATTCTTCTACTTTAGCTGGAATTGGTTCTGATATCCTCAGTGAGATTAT---TTAGCAA--ATGATTGTTTCTC---TTTAAGGTTTTATTAAGGACGAATACCTTTTATTCATGATTAGAAATGTgtccattcatttttcttttcacccctccttttaagaattttgtttttatatatttactagaTGTATTAGAATGATTAACTT--ATCCGTGTGAGA-----GAGAAGCATTTGGTGTATTTTAGAAAATTGTAATTTGAtggattttataagaaatgta-tattGCAA-----TTGCAACTAtgatctcaaaacacaaaatatt-tctgtTGTGCAGAAAGAATTTGTTTGG------TGCAGTTCCCTC--CTCTCAGCCCTa----------------------tgtacat---------gtatacatacacacact--------------tgtGTTATAGCTCAGTAGTTGAATTCCT--TAACGTGAATATTCcaagttctatccccagcactg---------------------------aaga--------aaaggatattgaaagaaaaatgca---------------------------------------------------------gtatgcat----ccatttacatatgc-----------------------TTTCTTTCGCATGACTTAAgttgaaagaagacagaaaatgctgactatacataaatcaataattgAGATAACTCTAATCAATT-------GTAAAGGTTAacctagaaataaaaatgatggctTGGGTATTTGTATTAAAGAAACCAAAGCAAATTTGTATTACTATAAGCAGAAGGCATATTAT--TTGTGCTGTTGAAAgcacaaagaatatttaaaggaGGAATACAAATTCTCATTGAGAAAAGAAAGGTGTAATTCCTG-Gtcaggaaaaa-------ttaaaacttttccaCTAAGG-CATTCGACAAT-CACTGTATTTAAGACACTGAGcatcaacataaaataaaattttgaaatgattaatttaaacataaaaatataataatttcaaGAAATGTTGCCACTGTTTTTTTCAGGTTCACATGAACCTGATTTTAGTTCCCATATTCCTTTTCAGaggaatatttaaataatttgactGTGACAAGCCACACTGCTTTGAGACCTCATTGAAagtcaaatgaaaacattaatcaAATGCAAAAATATTCCAGTCAGGCATAGAAATGCTGCAGGTTAGAAGATAAAAATGTTGCCTGTGAGAAAAGGaaatcaattgatttttaaaaagtaagcattGGTTCAAATCTACATGGTCAGTACTGACTAAATATCACCAGAATTCCaggcatttgtatttttcttgtgaaTCATTAGATAGTCTCAGGTCATGTCTATATTACAAA--AAGTTTGT----TTAACTTTTCACATGAGTAAGTTAAGAGAATCAGAGC-CAAGAACTGATTG-----TTGTCTCATGTTTTGATAGGCTTT------------------------------------------AGTAATTTGCATggaataattatttatatataaagcaACCAGGCTAGTCACT-------TGGGAGTGTTAGTC------CTACCTGAGCAAAAGACAAGTT--------------TCATCTATTAAACGCAGAAGAACTAT-TCCATACTAAGTGAGAGCTACTTTCTGATTTTTGCTATGAATTCAATAAAGTAAGGTTCCTTTCATAAGACATCCTTGTACATTGCGTTCTTATTTGGtctgagtgtttctgttttgtgg------aTGTCAATGACTGTTATCCCTAAACTTCTACTCTATGACAATATG--TAAAACAACACACCTGTCAT-TAACCAGCTGAGTCAT-TTAGTGATT-------TGTCTCTTTAAGCCTTTTTGTCATTACCTATTTATAAATGCTACTATATAGAGTTATGAGGCTTTCATTAGATAAAACCTGGAAAACATCACATTCATTGTCCGGCCCAAAGGTACATTAATAGatattattcttatattttttaactttt---tgttttgttt--------------taggggcCAAACACGTG---ACTAACTC-TTAAGAATTAACTGTTTCAAAATTCACAGCTCTTGCACTGATC---AGCTTAGTGTGTACTGGGGGAGTAAGCTCCAGTGCAAGAGCAATTGGAATGGGCTTTTCTGAGATAAGAAAGGGCAGACATGTGGGAGAGCTTCCTGGAGGAAGCACTGGGGTAGAAAGGAGGGAGGCAGGACAAC----------ATGGAAAACGGATGGACTTTGAGaccatagtgaaataaatcagagacacaAACTGAAATATTGTCTGGTTCTTCTTATTCGAGAAAtccaaaattattttggaaaaaagaagaaaataaaagttagatgataggaagtaggaagataaATGTTTCTTAcgtgggaaggggaccaagagagggaaagaaggaagggaaaggggtataaaaaggaattaagatgtgttacatacatgttaCAACTCCCCACTGGGAATGTAAAAAGTAGGTAACACAAATACACACTATTAAAAATatccagcaccacacacaaaaaagtaccctaaatatattttttcagataGAGGTTATAGTGGAGTTCA--aattagaaagccaaatattaaaacaacacagtTCCTGTTTTCTCTCTACTGCT-TGCAGTGCTGAAGAACAAATTTGGTAAATAATGGTTT-TCCTCTTCATCTTTaggaagcaagcaaacaaacaaataagaactTTGGGATGCCTA--CAGAGCTCAG-------TGTCTTCCAGGAAGGCTACCCTTGTCTCCAAAGCCAATGACATggaatatcttttttattctttgtacggaatgagaaaaaaaga---aatgaaagagaaggaattaAAAGAAGTCTAAAATCTATCTTCTCCTT-ACAATTCTCAGCAATTCAGGAGCCCATGTGAGGCAAAATCTTCCC-AGACCATAGACAGGAGAAAGTCTATTAAAATGTGTTCCATTCCCAAAGAAAAAGATCACTCAAGATCCTTGACCCTTCACTCTGAATAGATTTAATGAAAACCGactgatatttttaagaatttagagAAAGGGAATTTCCCTCCCAGGTGAAAAGAAGG

a score=30000
s chr3           154927143 2087 + 160039680 TATTGAATAGTAAAATATTCTTTCAGAAAGATGATGATTGCTAAT-GTATTCTCTCATTTAAATCCAAGAAGTCAGGTATAATTGTTCTCTGAGAGTTCTTGCTAAGGAAAGTTCCATTGGAACAGGTTAGAGAAGATTACAGGAGGGGAGATTATTCACATGTGTACTGACTGGGTTCTACACCTGGGCTCTCAGCTCCCCTGTCCTCTGAACTTTCAAAGGCATGA-----TACCCACAGCTAGCAGACTACCATACATGATCA-ACTATAGCTAAAGGCAAAGATAGTTTATG-TGCCTGGCAAGTGGCTTTCTCCCCAGGCTGATTGAGTATTTATAAATAGAAAGTATTTCAAA---------TGGTATCAATGCACTGTTATGTTTTATGTGTCAAATTCATGCTATGTAGTAGCTGCTAGAAATATAACCAGTAGGAGAGAATTATCAAGTTATCAAGCTTACTCCCCGCTTTTTAACGATTATTTCTGACTCTGGGTCCTTTCACACATTGTACTGAAACTTTAGAATTGTAAGAAT--CCAACATTAATGCATTTCAGCAAGCTGGGGTTGGAAACGGAGGAGTGGGAAAGGCAGAGATGCCGGCGGCGGCAGCATTAATATCATTACGGAAAGGTTAGCTGCTCAGGAAATCGACAAGACACTGAGGGGGTATCCGCCGAGTCT--CCTAAGAAACCAGAGCAGAGAGAAATGAGGCCAGACAGAGAGAAGGTTTTGTTGACATTTTCAAAAGCCTCCTTTATACAGGCAGGGTCTCTGGAGAATGGAAGACAGCTGAGTAGGGAACCAGCAGCTCTAGCAAATTAGAGGTCAGTGAGCTCGCAGCAGCCTCGGGGAAGCACTGGCAGAG----AGA-------------GGCAACC-TTCCTACCCCTCCACACTCAGCTCCTGGGTGAGGGAAGGAAAGAGAGTTCCAAGCCAGCGAAGCAGCAGGCTGCCCTGACTTGGATGTGATCATCGGCTCAGGGGTAGCTCTGTTGTGTTAAGGAAA--------------------ATGACAAAAAACCA----AATCCCTTAGAAAACCAACATTGAACATGG---------------------------ATTTTTACAGAACTC--GTGCTCGGAACTTTC---------CGTGCTCAGTTAAAGACACAGGA-------TTCAGAG---------------GTGGCTTAGAACCCGCCTCCAGGTGTGGGCTGG---------------CTGAGCTGAGGGTTCTGATGGTA--CTCAACACAGGAGATGGCCTGCGG-CAGGTCTGTTC------TCCAACACCGGTGGA----TAACAGATGGGTGCCGCTGATTCCAGTATGGACCCTCAGATATGAAGGGGCTTAGTATCGAAGGGAGGTTACGTAAATGAGGTATTGCATAAGACAACTATTGTTAGGACCAGTGGATGCAGTGAAAAATTAAATGAGTCGTTCTAA---------CAGGTAAGAGAGGAGAGATTTTAAGTGGCTCTCAGAGGACATTTTAAGTTATTTCTGT--GGACGCACAGAGAACTAACTACTCAGG-CCTCATAGTCTTATGGCACCGGAGAAGGGAAACAGAATCAGGCTGCGCCGCTGTTCCCAGCTGGGGAAGCTTAAATCAGACGAAGTTTGCTGAGGGTACTTATGACATAATCAGCCTCTGGAAACTAGGCAGTGAGGACTGTAGAGGCGCTGGAGTATCCACACAGAGAAAGTCAAGATGAGGCGGATGGAGAATTTCTGTTTAGATAATGGGTAGGAACTGAAAAGTCAGAAGAAAATGGTTCCTCCCGCAAGTTATGGGAGCCGAGGACAAAGAGCCAGGCTTC--------------CAAGTCAGAAATGCAAGTCGGAGTGGAGGCCAGACAGCAACACCTGAGCAGGTTCACACGGAGGATAGAGTAACTTGTCATTCATAATCATTGAGGTG--CCCTTCTGCTACGGGTGACACAGCAAAGTGCTCTGTGTGCTGAAGTCATA----GCTTGTGTTTAAATATTCTTTCTTAAAGGTAAAAGGGGGTGTGCGTGCGTTTTGACTGGTGTGGGCTACCAACGTGTGCAGACGAGTGCTTTAGCTGAACGGTGTAGCTCATGTTCTTGCACATAATCAATCAGGTAT--------------------TTGGACCATGTTCTGGCCCAGGAACATATGTCCCCACTTTCCCAAAGCCATTTTTATGTTTTGTACCTAACTAATAA
s HiC_scaffold_1 141942339 2148 + 233722169 TATAAACCAGTAGAATATTCTTTTAGGacaataaaggaaaagaattgtATTGTCTCATTTAAATACAATAAGGCAGGTATAATTATTACCATAAGTGGTATGTTAAGCAAATTTCCCAAGAATCAAGT---AATATATGGCAGGGTTGGGG----TTCTAGTGTGAA---AGTGGCTTC-AGATCTGTGCTCTTGACTCATTTCTTCTCTGACCATTCAGTAGTGTGGATTTCTACCAACA-----CAGATCCCCAGGTATACCCATGCTACGATTCAAGTCAGagaaaacaaatactttttgGAATGTTGCATTCTCTGAAGGCTGATAGag-atttagaaatagaaaatattcaaagaagcAAGACTGTTTACAATTGTCTGTGTGTTTTCCTGGGCCAAATTCAATTTATA-GCTAGGTACAAGAGATTTCATCTGCAGGAAAGAAATATCCACCTCTTAAGACCATTTCTTACTTATTAGCTAGCAATTCTGACTCTGGGTCCCTACCCAAGTTGCACTGAAACTTCAGAATCTTGAGAATGTACAACTTAAATGAATCTCAGTGAGACAGGGTTGAAAATGATGGAGAAAGAA-GGCACAGGTGCTACAAGC--CTGCATTAATGTTATTATTGGAAGGTGAACTGTTCAGGAAATTAACAAGGTACCAAGAGGGTGATCAGGGTGCCTGCCCCAAGAAatgagagcagaaagaaatgaggaCAAGCTAGAGAAAGGTTTTGCTGACATTTTCAAAAGCCAGCTTTATACAGGTCGTATCTCCAAAGATTGGAAAGTGACACTGGAAAGAACCAGTGACACCAGTAAGTCATAGGCCAGTGAGTTCCTCACCAATCAAAGGAAACACTGGAAAAGTCTCAGATGGGGCTCACCAGGGCAGTCACTTCTGCACCTGTGCATCCAGCCC-------GAGCAAGGAAAGGGA---CACAGTGAGAGGGAAAGCA--CTG-TTGGACTCAGGTGGAATTCTTAGT---GTTATGACTCTGACATATTAAGGAAAGAAGCAGCAGTGACTCTTTCATTGCAAAAAAACACTGGATTTTTACATCAAATGAAAATGGATCTTGGCACCAGAGAATTTCTATTTTTGGCCAAATTGTTTCTGATTTCCAGCGCTCTGGATTCTtttgtacacatatatttatttgaactCACACAAAATCTTGTTGAGTGTTTCTACATTACATAGTTTCTTGGAACTCACCTCCA----TGAGCTGAGATTCAGGAATCCACCCAGGGAAATGATTATAATGGAAGCCTCCACCAAAGAGAAGGGATTTGACCAGGTTTGTGCAAGCAATATGATAATGTGGGAGAAGTCAAAGAGTTTTTTCCTTGATTTAAATAcaactattttaatttaaagggaGTATGTGTCTAAGGGAATTTACTT-AATGAGGTGTTAAGTAAGCACACTAATTTTAGAATTAGTGAATGTAGc-caaaattaaatgagatgatcTAATGGAAGTAGCTGATAAAGGAAGA-ACATTTTAACTGCCCCTGGGAGGAAATTTT-AGCCATTTCTGCCAGGATACAAAAAG----AACAACTCAGGACCACAGAATAGTAGAATGCTAGACTAGGAAAAACAAACTTAACTAAACTGCAAGT----GCTATGAAAGTTTAGAACACA----------------------------GATGATCCTC---AAACTGAGAATTAAG---TGAGGAGGCAGGAGTGAATGAACTGGGAGAAAATCAGCCTGAGTTTGATGGCA---CTTTGCTTTAATAATGGA-AGAAACTTGAGACTCAGAGGATACTCACTTCTTCTGGATATTCCTTGAGCTACGGACAAACAGACTGACTTCAAATGGACACAGAGCATGTCAGACTTGGAGATGGAAATTATGATTGAATATTAACACTTG---AAGCTCTTTTGCAG----GAATAATTTCTAGCAC-TAACTACTTAGGAAATTCTTTCTTCCGGATGTGGTAAAACAAGGCTTCCTGAATATAATGATTATAGGCTGTTTGTGTTTTAATGC---------AAG--AAAACTGTATGTGAGTGTGTTGTAA---ATTTGGGTTTTGAATGTATACAA----------------------------CACATTCATGTTACTATTATATCAAATATAGGTAcctaattttttcttcttgaaccATAATTTGATTCAAGGACAC-TATTCTCATACTCTTAAAATGATTTTGCTACATTTAActttactaacaa

a score=12309
s chr3           154933194 1488 + 160039680 TTTTATAATCTACTTCCTATATAAGGAAATAAATAAGGTATTTAGAAAAAGATAC--ATATTCATGTGTTACTTGATAGTATATAAAATGTGT----GTGTGTGTATGTATGTATTCATATGGCCACTGTG-----AAGCGCTTGCTACTATTCGTTCCTTATGGTGCTGCCTAATGTTGCA--GTGCACTCCTCAGGGGAGAAGAAC---ATCCATGTGCA-----------GTGTCGACCCAATTTCCCAACAGTTTAGAAA-TGCGCTTGTCTAAGAGAATAGACACCTGGTTAGTTTTAATAGTTTTAAGCACAAAGTTTTAAA-GCCTTTAGCTGTAA-CTGTGACCT-TAAGTACCAACTTCACGAAGTAAATACATAAACTGGGTC-------------TAAGTCAT----TCCTTAAGAAATTAGAACATTCCTGAATAAAACTGTGAATAGTTTAAAAATATTTAAACTCT-------Atgggccacccata-gtggcctggatcttcccatatcaat------tatctaagacaatccccagagatatacccacaggccaaagcatgca-------gacaatccctc---attaagattcttccc--------agttgatttcaagt--ggtgtcggttgataattagagctaATTG-----TGACAGGTATCACCATCACCAAGGCTTCCCTCTA----------TGTCTCTGGAAGGACTTCATCTTCCATTAAAATGCAGTGTGAAGACTGGCAAGAAGCTGAGTCTAGATTGGTCTCTTTGCCCAGTTTGTTCTCTGTGTGATGGAGATGATTAAT----------GCTACAGATTCTGCACAAGCAT-------GGCCTCCT---------------CTTAGCAGA-----------------ACCCTCCCATTCGCTGCAGG--------------TGACCCTT-----CTCCTTAGTATTCATTGAGCACTGAAATTAATGCTCAGGGTATTATAACAAAAAGCCACAGAGAAGTCTTTCTTGCCAAG-AGAAAAATAAGTTTGTTTGTTTTATCTTTTGCTGAACTAACAAGCATCCATCCCCAATATCGAAGTGCCCCCTTTCTGTAGGTTGACCA--GCCATCTCCAGTAGCCTCCTCACTGTAGGA------AAGGCATTCAGAAATTCCACAAGACTCTACCCAGAAGTAGCCATGATTATATAAACTACCCTCAACCCTTTTATTTTTTACTACAACGGCATATTTACAAATGCCCTGAGAACTTCTCTAAAACTCCATTGCTTGAGAAACTTCCACATATGGATACAAGGTTCTG--------------ATCTCAGGAGATGAGGAAAGAGAGCAGGCTCTCTATCCCTGAAGCCATGTGACATCTTGAGCAGTGGGGTAAAACCCTCTGTTATAAAACCATAAGCAACCAACAATCATATCGGTGTGATGGCAACTGG----------TATCTAAACTCTCCC-TGCTAGCTCCAGGGAGACTTTCTGAGGACTGAGGAAATGCAAAG-----TGTGTGTTCA-------TAGAAAAGACTCAGGCCTGTTCTTC------------CAGCTTTGCATCCTT-AGTAAGCTTTCCACTGCAATGTGATCTTTTATTTGCTTGAATTCTCTTAAAAGCTGCTTTTGAGCCATTTTGGTCCTCAGGCAT
s HiC_scaffold_1 141946977 1613 + 233722169 TTTTCCAACTTGCTGCC-ATATTACAGAACAAATGAGGGGTGCAGAATGCTAAACTGACCTTTGTGTACTGCTTCACAGCTTACACTGGGTTTTCCTGTCTGTCTCTCACTGGAGTATCATGGCTGCTTTGTAAAGGAGAGGACGCTGCT--TCATTTGTTATGGAGCTGT-TAAGGAGACACTATGGGCTCATCCAGAGAGATCCACTTGATCCCTATGTACTTGCAGTGATGTTTCCGTTCAATGTCA-AACAATTCGGAAAATGTATTTGCCCAAGAAAATGAA-----GGCAATTTCTGGTAGTa--agttaaaaagttttaaaagactaCAGCTGTAAACCATGATTTCTAAGTTCAAGGATCACAACATGAGTGCATAAATTGGGCTAGGTGCAGGTTGGTAGGTGATAGGGTACACAGTAAATTAGTGCATTTCTGCTTgaagct----acattttaaaaacatttcaactcTGGGTCAAATAAATCACATCTACATGTTCTGCTCCTCACCAGCACAACATGGGGTTtggaagg--------agaaataaagcaGCACACAGAAGCATGAGATGCGATGAGAAAGGCTTGGAATTGAGCCTCCTAACGATAGAAGAATAGAGATCAAGTTTGGTAACTGTT----ATTGGAGCCCATCCAAGACTAACAGCCTCCTTCCTCTTCCACATCTCTCTTTGGTCCAAGTTTTGTTGTTGTAATAGCTT-------------AATACAGTGTGAAAA--GGCACG-------GTAAGAGTTTGCCCTTCAAATCTGTATTttc-ctgtaaaatggagataataagtCTAGCACAGAGTTATAGTTAGATTAAATGAATCTTAGCAGGACTCCTTTCACTCTGCTAGTGCTAAGTAGATGGTAGATATTATCATTAGTCTCTTGATCACTGAAGGAACTGCTTCCTTACTCACCCTTGAACTTCTCCTAGGATACACTAAAGGCAAAAATTAACTTTTAGAACTGTACAGTAATAAGCCTCAGAGAAGTTGTGCTTTCCAGGGAGGAAAGTAAGGTTCTTTCCTTTTACTCATG-TAATTTAACAACTCTAGA-CTCAAAGACAGAAGTGTCCCCTTTCTGAGGGCTGATCAATGCCCCCCCCA-TAGCCCCTTTTCTTTAGAATTATTCAAGGTGCTAGGTAAATTTGTCAGACTCCACACACCATGACCCATGCTTGCAC----------CAGCCGGGCCAGTGTTTCCTAGACTGACAT-----------TCCTGGGAGCTTCCCAATGATTTGATTG--TGCTAAACATACACTGAtgaagc--atgttctgtgggcagTACACTCAGCTACGGAAAGGACAGATGAGGGCAGA-GCTTTGATCTTGAAGCCTTGC--CTTTGTGAAACATGGG-----------------AGAACCAAAAATGTCAAGAGATGGTGTCAGTACAGAGACAGATGAGTGCTGGAGATTCTTATACTCTAACATGAAAGCATCCGTGAGACTTTCGAAGAACAGTGGAAAAGCGAGGGTTAATGTGTTGtgaaaagaatgaggaaagattcaCGCCCATTCTTCAAAGTCTAGATTTAGCTCTGTATCCTCCAGGAAGCATTCCACTCCACTTTGATCTTTTACTTACATGAAATCCTTTGAAAGTTGCTATTTAATCATTTTGGCCTTTAATCAT

a score=68904
s chr3           154938557 4244 + 160039680 [encoded data, 4935 characters]
s HiC_scaffold_1 141950742 4718 + 233722169 [encoded data, 4935 characters]

a score=23185
s chr3           154945771 654 + 160039680 GCATTATGAATCCTGACTGCCTGAGAGAGCAGCTGATCACACTCTTCATGTT-CCTCTCATTGTAAAAGCTCTCTTGGCTCCACTTGCTGTGAGTAGTTTTAATTTCCTGCCAGTATGGTGGCACGATTTTCTGGCATTTTCTTTGGAATAATTTCTATCTAGAGCCTAATGAGTGCCTGAGTTCTGGCTGGTGATAAGCGAGAGGCTGCCAGGGAGGTGCCAAGAGGCTCCTTCTGCTCT-------------GCCTCATCTCCTTCCTCCTGCTGACAGT-TCTGAAGGCACGAGTGTA--GGATAGGATCCTTTGCTGGAAGCTCTCTGACAAGCCCCCAACAGGAAAGGAA---------GGAAGCACAAGCCGCAGGGCGTACTCCCAAGCC-TGGTCACGGGCAGAGAAGCGGGAGCATTCACTT-TGGAGTGTCATCAATTGACTCATGAAGCCAAGGCTCTGAC--AGTGGACAGGCAGATACTCACAGCC---------AACACGCACAGACATAACCAAGCCTCCACTGGTTAAATAAAATGTTCTCCTATAGCTAAGAATTTAGTGTGTACATTCAGGTATCCTAAACAGATGTCAGGTTGCTGTGTTA-----CCAACTCAATTATAACAGCAGTCTGCATGTTCAGAGCTTCAGTGTCTGTAGC-----AGGGGCTTGGCAATTTTGACT
s HiC_scaffold_1 141957565 697 + 233722169 GCCTCCTGAGTCCTGAAGGCCTTATGACTTGGCCG-TCAGAGCCTCAATGTTACCTTTCTTAGCAGAGGCTCTCTGGGCTCCAATTGCTCTGAGCAGTTTTAATTTCTTGCCAGCACAGTGGCACAGCTTGCTGGCATTTTCTTTGGGATGCTTTTCATCAGGAGCCTAATGAGTGCCTGGGTTCTGGCTGATGATAAGAGAGAGGTTGCCAGGGAAATGCCAAGGGGCCCCTTCAGCTCTGCAAGGCACCACAGCCTGATTTTCCACCTCCTGCTAACTGTGTGCAAAAGCACCCATATATGGGAAATGTTTCCTCACTAGAGCTGCTCTGACAAGCCACCAAAAGAAGTGCAAAACCACCTGAAAATCACCAAGCCCAG-----ATTCCCTACCCTTGGCCACAAGGAGTTAAGCAGGAAAGTGCTTTGATGGAACTCAATAAATGGACTTGTTAAGCCAAATTCCTGATAAAGGAGACACTCAGATAACCAAGGCTTACTAATGGAACATGCCCAAAGATAATCAAACTTCCgctaattaaataaaatgttttcctatGTCTAAAAACGTGCTATCTACATCCAAGTATTTTACCCAAGTAAGAGGTTGCTATGTTATTAGCCTAATGCAGTTATCATAATGATTTGCACTTTCAGAGTATTATTCACTAGAGCACCTGAAGGTTTTGGCAAATGTGATT

a score=76737
s chr3           154949106 5451 + 160039680 [encoded data, 6125 characters]
s HiC_scaffold_1 141959566 5485 + 233722169 [encoded data, 6125 characters]

a score=76617
s chr3           154956646 5779 + 160039680 [encoded data, 6294 characters]
s HiC_scaffold_1 141965730 5496 + 233722169 [encoded data, 6294 characters]

a score=52051
s chr3           154964732 4655 + 160039680 [encoded data, 5191 characters]
s HiC_scaffold_1 141972941 4724 + 233722169 [encoded data, 5191 characters]

a score=26603
s chr3           154970263 1603 + 160039680 AGTATAGCAGAATAATACAAAAGATATTTAATATAAATTCTCAACTACGTATTCTCTGAGTAgcagatgggaaacgg------------gtttcctcttgagtatacccagc--agagcagggactctgggcccag-----------ctccattgtcttagccatgtcactcatccagtgagctaatgttttcagacctcagtttctttatgttaaagtggaaacagtaatggctctatctcttggagatgctgtgaggatttagtaagtgagcacttgtaaagtgcacagaacagtacttagcccttaacatccatctatagcaatggcagcACGAATGAGAAATGTGTGCATTTTACCCCTCTGTTGGCTAGTGGACAGATCCACACTTAAGTTCCTGGGCCTCGGAA-----------------------CCTTGC-CACCTAAGCAGATCTGCCCATTCGTGCTACCCCTGTGAG---------------TTTATAA----CAGATTTAAACTCTCTAGGAACTCCATTGTCTATTAAGTGCTATTATTACATATTTAGGAAATACTGTGCTTGCTAGAAGCACCTTGTCCTCCACTTAAAATTAAGTGGATAA------GACAAGAAACAGGGCGCACGGGGC------------TGAATTTGCCACTCTCCTCGTCAGCATATTTTAGCAAATGACAACAGTTTCCATAAATTACCGGTTCACTGCCTT--CACTCAGAAATCGAGTCCCTTATCATCAAAGGGCCATCCACATTTTAGCATAATTT-TTATGGCTGTGACTATATTTTTATGGAAAGCAAACAAATTTAGCTCTTCACCAACATGTATAGAGGCTC---TTTATCTCTCTGTTGGTTGTGAGGTCAATCAGCCAAGTAGATGACTTTGCAAACAGCATGCACACCACACCTCCTGCTCCTGCCGAACTCCAGGAAGTATGGAGTTTTCCCATTACCAG-ACTTTTGGAGCCTGCACGTGTA---CTGTGACCAGTGCCTGGCTCTCCAGGAACCTGTGTACACTCTGAGTAGCACATCAGTGGACTG----------CCAAGTTT----CATAATCTGTGGGT---------------TGTACTTCA----CAGACACAAGAGTGTGCATACAAATGCCAGC-TCACAGGGACACAAAGATATGGTGACCAGATTAGCACAGCCCACAGGAAGTTACAGGGGGACCCTCAGGGAGCACTGTGACATGACAGCTGTGGAAAGCCAACAGAGGATCAAGATCACACACAAAAAGTACTGTTTTACATGGTTATGTAGTTACTTTTGTGTTTCTGATTTGTTTGTTTTTTGGTT-TTTGGTTCTTTTAATGtttgttttttttttttttttttttttttttttttttttttCCAAAATAGCTAAGGGGCAGTGTTTGAAATCAGCACAGGTATTGTTTGTCTTTTGCTATGAGGAGATGGAAAATCAATGTACTTTGAAGTTGGAACACATTGCTTTGAATTCCGACTTCACTGCTTAGTTAAATTGCTTGGGTTTGATGGCTCTCTGCATAGGGTCACTG---AGAAATAGG--CTTGTGGCCTGGCAGA---GAAAGCACAGGGCTGCAGGCT---GATGAGCCCAGTACACACTCCAGTTCT-----------GTTCTCTGCCCTGACTGGCATGTTACCAGCCCTGTTAGGCTTTGAATGGAGTG-TTGGGAACTGGGGACAAATGACA
s HiC_scaffold_1 141979328 1626 + 233722169 AACACGACAGGTTACAATGACAGGTATTTA-TAGAAATTCTAGGCAAAGCATTACC-------CAGACGGGTTACAGTGAAGATGATCAATTTCCTACTGAATGTAGAAAGTTAAGAGCAAGAATTCTAGAAGCAGGCAGAATCAGGCTTCTGTTTATTAACTATGTCACC--TTGAACAAATTAACACCCCGAAACCTCA-------------CAAGTGGAAATGATAACCATGCAAATGCATAGCAATATACTAGGAATCAAAGAAGTCATTCCATATAAAGCACTCAGAAAAGTGCTTAGCACTCAAT-TCTAGGTTCTACAA--GCAGCA-------------TATGCATTTCATTACTTTGTCGGTTAATGGATAGGTCAAAATTTAA-TTCATGAGACTCAGAATGGTGGAAGTTTAGTCTCAAGAACCTTGCTCTCCTAAGCAAACATTTCCACTTACACATGCTCTATAAAATCTGATTATATAACTTTATAATGGACAGATTTGAACTGTCCCTAAAATCGACTGTCTATTAAGCATGATT-TTATACACCTAGAAAACATTGCTATTGGTGCGCACACCTATTCTTCcacttaaaaataagtaaataaacaaaaggcAAAGAACATGGCACATTAGGCACATTTATATAGCGAATGTACCATTTTACTTGTCAGCATATTTTAGCAAGTGACAATAGCCTCCATAAATTATTTATGTGCTGCCTTCCCACACAGAAAGTGAGGTCCTTATCATAAAAGGGCCATCCATATGTTAGCATAATTTGGTAGGACTGTGACTGTGTTTGCAGGGAAAGTAAACAAATTTAGTTTCCACCCATCATGAGTAGAGGCTCTGATTCATTTTTTGCTGGGTTGTGAGGTTAATTACCAAAGAAGATGATTCTACAAGCTGCGTTCAT----TGTCTTTGTCTATGCCTGAAGTCAGAGAAGTGGGGAATTTTTCCGTCACTTGCACTTTTGGACTTCAAACTGTCAAATCCATTTCCAGTGCCCAGGCCTCC---------CGTGTACTCTGAGAAGCCCATCAGTGAAATGAGTAACCACTCCTAGCTTAGACCATGCTCCTCTGGTCTGAGACACCCAGCCTATGCCTGAAAACCGAGcaaaaaag---gcacatggatgagAACAGCGCAGGCACAAAAGAATATTGGAATT--CTTAGGACAAC---CAGGAAGTTAAAAGCG----------------TATTTCTCCAAAACTG-----AATTACCTGAGG---AAGATGAAATTGAGAAGA-----------ATGAAAATGGGATGGC----------CAAAGATGCGTGATCTTTGCTTATTCAActtcatttatatttgtattttatttagttctttccAGTTTACT---------AAGAATAACTCAAAAGCAATGTTCAAAAGTGGTAAAGAAAAATGTAGACTTTcaatatttgaaagttaaaaatcaatgaaGTTTGGAGTTAAAACACA-----TTTGATTCTGATGTTGCCACTTGAGCAAACTGGCTGGATTCTATGATTTGTTTCA----GTGACTGAATAGAAATCAGAAAGAGTGCTTTAGCACAACTGAATGAACTGGGCTTTAGTCTTGGAAAGATTTGAGTACATATTCTAGCTCTTTTACTTATTAGCTCTCTGTCT---CTTGCATGCTATCTGACCTG---AACCTTGTATGTAACATTTGGTAAGAAGGGGCATGTAACA

a score=31508
s chr3           154983252 2029 + 160039680 TGTTTAGACATTTTATGTTGGTGATAG--TAGAACCAGTGTGTGCATTGAGTTTACTTC--TAATAA----TGCCTCACTTATAGTCTTTACTGACAGAGGG---TTACCTATCAGGTACTAAGCTTTTCAATGGATCTTAGCA-----------TCTGATACATTTTCACCTCCAAACAGA--aaggcagccactgctctcccattttgaaatgaagaaaatggaaccctgggtgattatg-tgacatacttatggtcaaccagtctctacgaaggagaggcagaatacaaatctacatctgcctgacttcaaattgtagttccttttggctgcCTCTGTCAGCAGGATCTCATTAG----------------------CAAATGACTCAACCCAGGTTGGTAGAA-GACACCTGTCTGTAAGGCTCCGTAGAT-CAGGTTGGAAATGAATGCCAGAGACATT--AATGAAGAGTCTGCTGTCTGAGTCTTCCAGTGATTGAAAGTCCAACCTCAGAAA--CTCACGCAAGGCTGTTAGGCAGGCATGGAGATGAGGCTTTTTAAATTTCTGTAATTTTAAATATAGAATAAAACAAAACGGATTCTATGAATTTTTTTTACTCT-AAAATGACTTTAAAATATTAACACACAGATCCAATTTCTTGGACATGGTCCCATAATTTACTTTCCTTCTAGAAA----------GATAAATAGTCCAAAGCAGATTTCTTCCCTACCAAGTTTGCACTCATCCAGGCACCGAGAAGGTTGACCTTG-GGCCGAGTATCCATTAATTATGAAATACTGGCCTTCTGAGAACCTGTCAAAATCTAAGCTTTAATGAAACCACATGGAGTCCTTACTGAACTGTGGGTTTTTAATAGCTTATTTTTAAATTTAAGGAAATACTTAACTATTGAGAGCACCGTGTGTGGGAATC--CTGGGTTTTCAAGAATATAAAA---TTATTCAACATTACAATCAACGTTCAGGGTCATTC-----CAGGAAGACTCTTTGCTAGAACTCATGGGAATAAGGAATATTTGGTGTGCAAAT--ATCTGCTAGTCAGGTCAACACAA---------TATAGACATGTAAAGAAAGAGCTATAT------AGTCATTTTACCCGTGCGTCTTCTACCCAGAGTAGGAAGCATTCAAAAGCCTGCTTCATCCTCTTCTTAGTAC----------AAAGAGTCCCACATTCACTACATTCTATTTGCTACTGTGCAAGATATCTGCAGGTCTGACAAATGTAGTAGTTGG------CTATATTTCTAATCAAAGAGTAAAAGGGAAGATATACCTGCTATCATGTATAGGGGGATTTAATCATATATGGGAGGGGGATTTAAATGTAGACAATGACAACCTGCTTATATATTAAGAAAGTTGAACAATGCAGTTCATTAAATGCCTAGTAACCTTTTATTTTAGAACAATCTTCAGCAATTCCCAAGCATTTTGTTCATGACAGAACTTATAACTGGGCTTTAAAATATTACATAATTCATCTCATAAAGATTTTTTTCTGGGCTATCTCAGTGTGATGTTATATGCTGCCCCCCCCCACACAcactcagaagtatgaagcagagagatcaccataatttcaaggccttcctagctaacaggattagactctgtctcagaaaagtaaTTACAGAGT---TATTCTGCTATCTCAAACTTTTTGGAAGA--ATACTGTCTTAATATTTTTCCTAAAAATGTCATAATAAAATTTCATATCAAATAGTAAACTAGAAACAGGTGTTATCTTATGACCCCTGAACAGCCTGTCTATAGATACTTTCAGTC---------TGTAAGTTGTATTAGATA-AATTTTGTATAGTCTACAGAGATATAATTA-----------------AAGTATAAACTGGTAAGTGGACCTTCAAGTAACAGAAAGAGAAGGACCATAAAGTGCTTTGCATTAAGTAGCTAGTTTATTATCACAGAAATTGGGCTAGAACTCTATATTTTGAGAGTGGCACAATCGTGATATAGATTCTCCTCTGTAGATGTTTGT--TTTCCGTGTTATCCCTGCAGAGGTCCTAGCGAGCCTCTTCTTTGGCTTGTGGATTA--AACGTGCACTCGCACATTCTGCTTCTTC
s HiC_scaffold_1 141983849 1945 + 233722169 TATTTAGATATGGAAGATTAATAATAAATTGTATGTAGTATATACAGTGAGCTTGTTTTCTTAGTAAAAGTTGAAATGACTATAATTAATACTTACAGAAAGAAATTAAGTATTAGACACTGGACTG---AGTGTATC--AGCAGTACGTGTCTCTCTTGTACAATGCCA-----AAACATACAGAGATAGGTACCTCTCTCCCACTCTAAAGGTGAAGGAACCAAGTCTTGGGTGGGCAGGGTAACATATTTGTGGTCAATCAGCTAGCAAGAGGAGTAACTGGAATTTAAATGCAGGCctgtttaattttaaagttt-gttcCATCAGGCTGT-TCTGTGGG-AGGGTCTCATTAATACAAACCTTTAAATTATGAACCAACTGACTcattccaaaacaaaagaaagccacTAGTCTCTA-GACTCTATAGATGCAGCTTGAAAATGAATGCCAGAACCATTTTGATCAATCGTCTGGTATCTGAGGCTTCACACATGTGGGAATTCAGTTTCGGGAAGCTTGAAAAGAGGTCACTAACGATCAAGGTAGAtgaagctttttaaatttctcttcttttaaatatgGCACAGAATAAAATAGATAGCATGGATTTTT---ACTGTGAAAAGGATTCCTAAATGTTAACATATAGAGAAAATTTTTCAGGCACTGTCCTAAAAGATAAT---------GAAGCTGAGGCTTCGATAAATagtcaaaagta-atttttttcctcctaagtTTGCACTTACCCAGTTACTCAGAAGGTCAACCTTTTGGCTGAATATTCGTTAATTATGAAGTGTTGGTCTTCTGAGAAACTGTC-AAGTGTAAGTTTTAATGAAACTACACAGAATCATTATTGAACTGTAGAATTTTtagagttta-ttttaaatttcaagaaataCTTAACCATTGAGAGCATTGTGAATTGGAAACATCTGATCTTATATAAATACAATGCTTTTATTCATTATTGTGTT-----TTTGGAGTCAGTATGGAGCAGTAACTCCCATTATCA----TTATGACACTATGGTATATTTGATCTATAAATTCTTTTGCTCTGCAGGCTAACAGAAGTGTACTCGTATGACATTTTAGATTGAAAGCCATATCCGTTGAGTCATTTCAGTCATGTTTCCCCTACT----GTGAGAAAAGTTTGTTA-TCAGCTTCACACTATTTCTTCTACAGGATTCCCTAAGAAGTCACAGAACGAATCCACTTTACTCACAGCTATGATAGACATGCGATATTCACAGTCATCAAAGAATTGGAAAGGACTATACTTCTAGTAAGTTGAAGATGAGACAGATATGTCTATCATTGAGCATAAGAGAATTTAAACAAAT-------------------------AACTAAGACTCCATTCTATGAGAGAAACTTTAAATAATTCAATTCAAcaaa---ctattgagcatttatttcAAATTAACCTTTGGTGATCTTTACGAGCTTTCTCCATGCCAGGAATAGTGACTGG-------AATCATAGATACATTATCTCATTAAGTTC-------------------------------------------------------------------------------------------------------------------------------------ATTACAGTGTATACATTCTACTGTTTCAAAATGTTTGAGACGTTATATGGTCTTGGT-TTTTTCCTTGAACTG-CAGTATAAAACTACTACGGAAATTGTGATGTAGGAACAAGTCTTATCACA--------GAAAAG-ATATCAACACATGCTTTAAATACAAGAAGGGTATGAACAATATCATACACAGATTTGTGTGACTGACATATACATCATTATTAATGAACAGAGATTTAAATATAAActggaaacaatacctttcactgCAAGAAGGATATGTATTACACAGTGCTTTCCACTGGGTGGTTgttttaaaagcacagaaaatagaacaaagttCTTCATTTGGATAGTAATGCAGTCACGAAAAGAATTGCCCTTTGCAGATATTTTTACTTACCAGTTGACTTCTGAAA----CTAAGTGAATCTC--CTTCAGTCTCAAGGTTGTTAACACTCACTTTCATATTCTGCTTTTTC

a score=20941
s chr3           154990239 1750 + 160039680 TATGGAGTTTTCCACTTAGGTCATTGA-TGACCATTTCTGTAATAGAACTCGAAACT--CTGGTACAGCTCTAATTAAGCCTTTGTCTAGAAAACCCAAATGGAAAATCATTTCTCCAGGCTGTCATAGAAATATGGTTCTCTTCCTGTGAGATTTC---CTTATCACCCCATAGTAATATTAAATTTAGTTTTAAGATTA---AGAAGGTTATTTCACAAATAAT--TATCAGTGAAATGAAAGAAA----TCACCATTTTAAGTTGTGAAAGTAAAGTTTAAGAACACAGTTCtgcgtgtatttgtgtgtttgtacttatatgtgtgcatatgcgt------------tgtgtgtgtatatgtTAAATAAACTTTACTAAATATGCTAACATAGTGTCAAT-TGTCACTGTAATGTGATGAGAACACATGGAGAAATGTGATGACTGGAGCCTGAGGCATCACATGGATCAGAGCAGTGAGGCTAACCCACATTCAACTCACTCTAAGAGCAGTATGGTATCAAAACTAAATATTCCTGTGTTATGCTTTCATGGCAGTGAGATtctctctctctctctctctctctctctctctctctctctctctctctctctttccctGGACCAGCAATAGGAGTGAAGGGACAAAGAAGGTTTTGTCAAAGTGAATATGATGGGGTACAATCCTATGCACAATGGTGACCTGATGAAACCTATTGTTTTCTATGCTGACAAGTACCAGAATAAAAGGACATAATCTAAAATGTGATTACAGCAGAATAAGAAAAGAGATACCTGAGATATTTCTGGTTAAAAGTGTGAGAGGAAGGGACCTTGAAAAGGAACAAGAAATACAAGCTA--GGGAATAAATGGAGCCAAATGAGTAGCTCCAGCGAGAGCCTACAGAAGG----------TCTGTAAGTGGAGGGCCCATGCCTTCTGCATCCCCTGCCCCCCAGC-CATTGTGGTGCTGTGCTATTGGCTCCTTG-----AGGCCTTTCTGATCACTTCTTCATGTGGGACTCCTATTTTTAAATTTCCGGCTTATCCTCCAGGCTTTA-----TTAT--------ACACATGGTGTCCTATACATTTCAAAAGCCATGATCTTTTTTAATGAGA-------------------AAAGGCCCCATAGTTCCCACTGTATTGCAATTGCTAAGACCTGGAAATTGCCGTAAGAGTTATAGTCCTTCCC-ACGA-ATGGCCCACACTCCTTGACATGTAACCGGGACATCTCATGGTAGAGGAATTCA-----TACCCGACAAGCAATTTTCTCTGGACT---TTTCTTCAAACCAACTCTCCCATTCCTTTATCTTCTCAGAGGAAGCACATTTGGAGAAGTGTTTGGAAAACAAAGGTGGGGTACCTTGGCTTGA------GGCTTCATAATTACATTCTGCAGGTGA------CTCAACT-------------GAAGGGCACAGACAGAGTGCAACCCTCAGACAAGACCGAGTGG----TATGAATTCTCCCGAGAAAT-----------------------------------------------------------------------------------TATAGCAGTAATTAATGAATTC-TAGCAGCTGCGTTTAAAAACAAAAGAGA----TGACATGAACACTGAGGTTTCA--------GGCCAGTACAATTGAAAGCACAGAGCTAGAACACCCAGTA--ATTCCTTTTCAGCTTCCTCCTTAATTAACACCAGAAACCTGACTACCTGATGAACTGCAGGATACCCACATTAATTTTCTGTAGGACAACAGCTGTTAGTCATCCATTGTTCCTTACAGGTTCCTCATTTAACAATAATGTTGAGAGTGTT-ATCCACAAATACATCAGAGCGAACGGCACAGGGAGCTCAGCATATCCACAGTTGTAGA
s HiC_scaffold_1 141990050 1683 + 233722169 TACAGAGTTTCTCACTTATCACACTGGCTGAATGTTTTtgtaatagcttttttttttacctgacaTAGCTCTAATTAAGTACTTGAGTACAAAATCTAC-TAGAAAATAGTTTCATCAGGCTGTCACAGAAATGAGCTGCTCTTCT----AGATCTCTCTCTTGTTATCTCaggttaaaattaaatttgtctttaaaattattcagTGAATAACTCCACAAATAATATTgtcaaagaaattaaagagaagcTCCATATTTTTAAGTTGTGAAAATAAagcttacacacaca----tacacacacacacactcacacacacacatacacacacatgcatacaaacACACACTTTATGTGTAT----TAAAAaaactctttttattatttaaacttAA---CAATGCATCTCAGGAA-ATGAtgagaatata---agaaa----------------------atcaagaGGATGGGGACAGTGAAA-----------------------AGAAGCAGGATGAATACAAGACTGAAGACT-------------------GCAGTG-------------------------------------------------------------GTACCATTTATAGGA-----------------------------------------------------------ATAGTAAC----TGAAAC---------------------------AGAA----------------ATAGTATAATTACACTAAAGTAAGACAAGG-----------CTTTTATGGCTATAC-TGTGGGAAGAAAGGaactagaaaaggaaagaaatgaatcatCTAATGGGGAAGAACAGA-CCAAAGGTATGCCCATCAAGACAGCCTGAAGGAcagatatttgtttttaaaacaagaggGGCAAACTTTCCTGAA-------CCTCCCAGTTCATCGTCATCCTGCTGTGTGGATTCCCCACATGCATACTGTcctcatcattttcttatgtgaaggttttattttaaaatccctgGCTCAGAACTCAGGTTTTCCCTGTTTACTGCGAGGAACACATAATATTCTATGCATTTCAaaaactgcatttttttcttttgagatttacTTAAAGAGCTTGCCACAGACCCCACAGTTTTCACTATATAGCAATAGTTGAGGCTTGGAAATTGGAGTCCCAATTAGACTCCCTCCCAATGACATGGCATTCTCTACTGCACACCTCCTCAG--CACCCTAGAGCAGAGGAATTTAAGTGCTACCTAACAACCAGTTTTCTCATGCCTTTCTTTCCCCAACCCAAGGCACCTGTTCCTCTATTTTCTCAAATGAAGCTCATTTGCTAtagtattttcaaaacaaaagtgaTTTGCCTTCACTTAAAAATTTAGCTTCAAAATTACATCCAAAAGACAAATTGGTATCAATTAGTAGAACATAAGAAGGAACATATACAGATTTTGCCCCTTAGATAAAGTTAAGAAGACTTCTTTCACTCTGtcgagagagaaagagaaagagagagacagagacagagacagagacagagagagagagagagagacagagagagagagagagagagagagagagagatcaatggTTAATACATTTGTAGCAGTGGGagcctaaaacaaaaacaaaacttaacaTGAACAAGGAAGTCTCAGGTTGAAGGGTTAGTACCATTACAAGTACATGTTGGAAATATTTAGTGTTCTTCTGTTGGAGTTTCTTTACTaactaaaactagaa--------aattgatgAGCTGTGAGATA-TTACTTTAAGTCACTTCAGGACAACAGGTGTGAGTAATCACTTATACCCTGCAGGTTCTTAATTTAactagaaaattgaaaatattggtTTGCAAAAACCTTAGAATAAGTGGCACAATGAAA-CTGTACATCTACagttacaaa

a score=21515
s chr3           154995465 1227 + 160039680 CATGGCACAGTTGCAG----TGCGATCAAGAGATATAATTAAGGTAAGAACAAAGTGAGCAAACTTGTTCTGAGCAGGGTAGGAATGTGTGCTTCCATGTTCTG----TGATATGTCACCA-------CAGATGGAAGCAGG----AAGAACAAAGAGACAACAAGGCAG-------GACTTCCAGGCACA----GCCAGAGGGTGACAGTC-------ATTTTGCCACCATGGAGATTTTGTTTGTGTGTTGACTTCAATGTGTGTGTCTTCCTCTAGGAG--AAGCTCTGC-AAGCTGGCA----------------TTCTTTTTTAAGCCTTGAATCAGCTGGGATGAGTCAAGAAAAGACCTTGCAACCTATTAGCTGTTCAATAGATATTTGTTTAGTAATCCGGTAAAGGGAAGGGTGAG---------------CAACC------------------------------GATGTCTAAAAGTATAATTTATAATTCTTTCAGTTTCTA---CAACTGTCCCATGTCCTTGTGGCTCTGCGATAAAT-CTCACTGACATTATTTGCTGCTTC-TGACCAACTTTCACAATTCTT-TGGTATAAATTTCTCTGAATAAAA-TTTGTAGACTAGGATAAAAAACCTTCTAGAACATCAAGGTTAGCTTTGTGAAGTCTAAACAGTGGGCACAGAGCCTCAAGGTTTACATATTGCCAAAATCTA---AATGCACACAAGAGAGAGCAAGTGATGAATTTT------CCTGTCCCTTGGGAAATAAAACTTGATAATAGAAGTCTATTTATAGTTAGAGCTGTA-ATCTGCCTCTGGGAAAGCAATAATATTGGGGCAAGCGATCTTGT--TTTCTCaaatttttaattaaaaaaataaaaGA---------AATCTCAGTTACATTTGTCATCCATACTTGGAAAAAACCACGTCTAAAGAGTTCACTAGGTCTGACCCCAGTCC--------AGTTTTCTGACCTCCAGCACCACAGCACACCAGCATGGCATGAGTGGTAGAGGAGACCAAACAGTAATGATGTACAGCAATTGCTTGGCAAGACTTGATACATTTTTCAATGATACATTTTCCAGTTGATACAATTTAGTTTCTTCTCTAGTGATTATTTACTGGGCTGAAATTTGGATTTTTCTTTTTACA----TGGTAGCATTAAGAGTTTAAAATAGAGCAATAATGGCTGACC-----CTCCTGATTG-TTTCTCCTCTGAAGAGACCTTTTCTTGGAGAGTGG----AAGAGCTTTCTCTCACTGTCCAGCAGATTCCCAGGACTAACTGAGAACAAACCCTGATTTTTTTCCTAAACAATTTGTATATAAGTCA
s HiC_scaffold_1 141997594 1309 + 233722169 CATGGCATATTTGAAGAACTTACAGTTGAaaggaataaataagaaaagaatg--gGGATTAAAATT---------AGGGAGGCAATGCATACTTC--TGCTCTGAACATTAAATGTCACCCTGGCTACCAGGTCAGAAcaggttaaaggagaaaaggcagaAGAAAGGAGACCAAGTGACCTCCTTTCACATGCTGCACCATGGTCACCTTCCGCATAGGCTTTACAAAAGGGAAGAATTCACTCATTTGATGATCTGATTGCCTGCCTTTTGCACTAGACTTTAGGCTCTGTGAAGCTGGGAAGTGCATAAAATtgtgctcactatta---cattaatAATGTAG--------AACACAGATCTTTAGAATCTTTTGGGGGTTCAATTGATACATgtttaataattaaatgaaagaaaaactaaatgtaTATTACTGTTACAACTTTTTATTTAATGGATTACAAGCTTCTAGATGACATTTAAAGCTGTATTTTAtacttatttccatttttatctcgACTCTTCCATGTCTGTGtatgtgctcagtaaatgtttactGACTTGATTTGCTATTCCCTCGTCAATTCTTATATCACCTATGATATAAATTTCCTTGAAGAAAAAtctgtagaacacaa-aagaaaacttctaaAAAGCCAAGATAAGTTTTATAAAGTCTAAATGGGGAACGTGAACTCTTAAGGTTTACACATTGCCAGAAACTATGAAATTCACACAAGGGAGAATCAGTGATGAATTTTTTTCCCCCTGTCTTTTGGGAAATAAAACTTGATAATAGAAGTTTATTTATAATCATAGCCTCAGAATTGCCTCTAGGAAAGCAATAATAATGGGGCAAGCCAGCTTGTTATTTTTTACAAAtccaattaaaagagaaaaaaatgaagactcaattttaattttatttttcataaacac----AGAGAACCAGACCTACAGAATATACCAGATCTAGTTTTAGTCCATGTTAAAAGCTTTCTGGC-----ACTTTATTGTGCAAAGGAATCCATTAATTGGTTGCCTGGAATATACaatgatcattt-----tattatttggcAATAGTTCATACATT------TGAAACATGCATTAAATG-TACTAGTCA-----TTCTCTAGGAGACTTTCACTGGGCTGAAAGTGTGAAACAGTTTTAAACACCATTTTTAGGAAT-AGAATGTAAGTTAGATTAGTAATGGATTTTCACTGTTTTCTGATTACTTTTTCTCCTGTAAGTGTCTTGATGTATAAATTGATGATAtgcattttcttttactatttgaCAAATTCTCATTATTA------AGCAAATCCTA-----------GAACAATTCATATACAAATCA

a score=24452
s chr3           155001254 2951 + 160039680 TTTTTTTTCTGACATAAATTTGTTTGAATTTGAA-TGTGCAAGACCTCTGTGTTTCCCAGTGAAATGACC-TAGATAAAAAAAAATAAAGCCT-------AAAAAGTTTCAATAGTCATTCATGTTTACTTTCTTTGTCTTAGTT--CATT--------TGCAGTTCTCTTCATATTTTCTGTGAAGTGCCCTACATCCTGCATGCATGCACTGCTATGGG--CAAACA-------TTGGCCAACACTAAACATCTCAGACAAAAGACAGAATGCCACTGGGAAGCAAGAAGCACTTGCAGCCGTTGGTACTGAGCTCTAACTGCTATCATCTGAAGTGGTGGCTACTGAGCCT-----GTGCTCCATAATCAGATGCTGGCTCCTGGTTTTCCTGGATTTTAACA---------------------------TTCTGCCTCCTCCCTCTGATT-------GCCATGCACATCACAAAATTAAaaaacaaaacaaaaccaaaaagcaaaaaacaaaacaacaaaaaacccaaaacaaaacaaaGACCCAACAAAAACACATCAACACACACAGTTCACAGTATAGGAAGTCTAACTCTAATATTAGGCATGCCTCAAAACACTACTTATCTATGCAAAGACCCAGGAGC---AGATCTCAGAGATTCTAAATGGAGCCAAGTATAAA---GAGAGCTCAGAGGCTGTCAAACTTAAATGCTATTAATTTTAGAAAATCAGAGAAGTATAATACAAATATTCCTAGTCTATGTT-----AATTACAACTAAACCCCAATGTTGGAGCACTGTC-------TTCACAAGATACCTCTGTTCTCCATAGAATAAGGAA------------AGAAGGAGTTTCTGTGTACCGAA------TCCAATGCACTCAGAG--AAGAGACTCAGC-AAAGAGACCAGAAGTG-------GAAGCTCTGGCATGTCCTC---------CAGGTTGAAAATTCTCCAAGTGGGTGGG----------GGGTCTAGTGAAGGACGTTTCCGAATTACACTGAATGCTCTTGTCTGTTCTTGATGCATTCATAAAACATACCCTGTGAGCTCATTGTGAAAAAAAAGGTTTGCACATAGTTTTTGTCAAGTCTCAGGTTTCATACTGTTATACGTTAATATATCCCTAGCTATCTTCATTTGAAAAACAAAAATA------------CCAGTTCACTAGAACCTGGGG-------ATCTTATAATTGGACTAATGATTTTTTTCAATAAGGAGGAAGCTAATTAAGCAATAATCAGTTTTAGGAGCCTCCATTG--CATGACAGATTTTTTTTTCTCCCTGACAGCTAGAAGCCTGCAAGTTCTGAATTAATTTGTATGACTATGAGAATGGCAAACTTATTAGCGTAACTCACTCTAGCTCCTAAATTGTCTCCCAGTTCTGAAGCAACAGTAATGATTAAAAAGTTCTATTTTCAAATGTTCATCAGCTCTGAGGTTGGCACA-----GAGCATAGTTTAAAGGCAATGATTCTTGCTCTTGGAGGTTCTGAAACattaaaaat-ttaaaaaaaaaatGAACTTTCTTAAAATG-----------AAGCAGAATGCCTCTATCTGGAGCAACTAA--GCTTCCCCAGGAACTGGGTGACTCCCAGTTGTG----AAATCCAACCCTGCTTACGCAGTAAGTAGTTA-AGGGCAGCAATCTGAGGTGGC-------------------TATTTGCCGTGTAAA------AGAGAAAAGCACAGAGTAAAAG-----------AAAATGTCACTCCGGTTG-----------CTGTGAGAGGCACAGGAAGGGGCAGGTTTCCGATCATGCCA------TTTGAAGCCACTCCCTCAGAGGCACATTGCAAACCTCATACCTGTGA----TGCAGGGGGAGCTGGCCT-----TGTCCCAATGGACTGGCTGTTGGCTCAGCAAAACTTAGCCTGACCTCTGCCTCACA--GAAGCTTTTCCGCTGTCAGCA-----ATTTCTTGGACACCATGTTCTCTGATCTGATTTGACTTTTAAGGAATGGTA--ATATTAAATCAGACAAATAAAAAGATGAGCACATCACACAGTTCTTGACATAGGGAAATCATATTTTCCTAGAAAGACTTAGCTATAAAAAGATTCTAAATACATCTAAGAGGAATCCTACGTGTGAGATGCTGAGCACCTTATTAATTTATTTCTGAGTGTTAATGGAAGCAACTGAAGCATGGGCAGAAAATAGCGGTGGCTCTTGCTCTAAGATGCAACTAAATCAAAATACCTGGGAGACGGAAGACTGAGAAGACAGCCACGAAGATCATGTGACCAGATAGCT-----------------TTGTTGCTTAACTCAGCAACAACAA-----TAAAACAAT-TATCTGAGCGGATGTCATGACTGTTGCTTAAGAAACAAAGGAACACTGTCATCTAGACACCTCTATTTAAAGAAAATCTCTTAACTCTACAACTGTGTGTAGGTGTATGCTCAGCTA----AAATATTGAACTC--ATGTTCAGGTTC--TCCATTTTTAATCTTTCTTTT-----CAAATACTCAA--------AGGAGTCTCACTTATAACCCTGGAGAAGGAGCTCT----GTGTTTGAAGGAGTTATTCCTCACTCTGCTGGGAGGACTACTGCTGAGAGGACTTCTGAGCAGCACCAGGCAGTAAAGTCCTACCTTCATCTGCTTTCTCTGCACTGGGCCTGTTTGAAGGTAGCTGCCTGGTC-AAGTCCCGTGACCTCTTTAGAGCACAGCCAACATCTGCTGGGCAGTAAAGTCCCGTGTATAAAATCTCGGCTGCTTCATTGCATGTTGGAAGTCCCTTGGGAGTCACTCCAAATTCAGAA-----------------------CTTGCAAAGACTGGCTGGGACAAGCCACTTTCATCCATGCTTTGTTC--------------CCTTCATACTTGTTCATCCT----CAAACCTTGATTCAGTGAACACTGACTCCTAGGAACCTGTGCTTGATTGCTTCCAG-----TCTGGAGTAC----------------TTTTATCCTGAC-TCAGTCTCTGACAGTGCCT-CTTTGAGCTTCCCTAAGAATCATTGTTGAAGCTGACCATCAGACAGCTAGACCACTCAGAGGCTATTCTCCATCTTCTTTCCATT-----GTTCTGTTCCCATGATGCACCTTTCTCTACCTTTTCTTACCACAGA--CATGGGAATGGGTGTCAAATT
s HiC_scaffold_1 142001794 3001 + 233722169 tcttttctctgtCATG--TCTATTTGGATTTAAAATGTGCAAAACTTCACTAGCTTCCAGTAAGACTACAACAGCCAGGACAGTCATAAACCTCATTAGAagaaacttctttctttctttttttttttttttttctgttttacttgtcCTTATCTTTGATGCAGTTCCATGCACACATGTTGTGACATACCCTGTGTCTTCTAGAAATGCATTGTCATGGATCCAAACAATTCATGCTCTCTACTGTTAGATGTGTCTCCcaaagga--ggat--cactgtgaagcTGACAGAACTTCCAGCCACTGGCA--GATTTTTCA--------------------AGATACTGAATTTCACAAGTGATCAATAATCA------------TGGTATTATT----TTTAACAATCTCCAAGAGAGAGGAGTTACATTTTCTCTGCacttttcttttgactttctATGATCATATGcttcatcaatttaaaaaa----------------------aaataaatgaatatgtaactctcaacaaaaaaaa-----------------------------------agtataaga--------tcAGGTACCAAA--------GAGAAGGTATTCATCTTTTAAAACAGAGAGGAAACAAGGAACTCAGAGACTCTAAATACATTCA-GTACACAACAGAAATCACACAGTGTGTCAACTTTAAAGGCTGTTAATTTTATAAGGTCAGAGATGGCTGATCCAAGGATTCAGAGTTTATATTTAATTACTCACGATTAGGCCAGAATCCTGCAAAGTTTGCAAATTCGTTCATAAGAGAAACCTA-----CATAAAATATATGATGTGAGTTATTTAGCAAAGGTCTTTATGCACCATGGCATTTTTCATTGTAAACAGCTTTATAATgctcaaagaaaaagaacaaaagttctTTCTCAGATCTGTGGCAAGGACTCACTCCCGCGTAGGTGATAAAATGTCGGAGCAAGAAGACCTCACATTTTGTTCAGATAATAGACATTTCCTAATTACACTTAAAACTATGAGCTGTTCTTGATACATTGAGAAAATATGCCCAAAGAGTTTCCTGTGGGAAGACAGGTTTGTGCCTA-CTTAGGTCATGTTTCAGGTATTGGATTATTTTGTGCTAATATATTTCTAGCTATTTGTGAGGGGGAAAAAGGTATAATATATTTTAGCCTAGTTCACTAGAACCAAGAGGACTAATATACTATAATTGGACTAATGA-CTTTTTCAATAAGGAGGCAACTGATTaagtgataataatttttaaaaacctccaTTGTATatgacagatttttt----tccccaacacCTAGAAGCCTACAAGTTCTAAATGTACAGGCCTGCTTATGAGAATGG---AGTCA-TAGCACAACCCACTGTAACTCCTAAATTGCTCCGCATTTGTAAAG----AATAATGACTAAAAA-CAggattttcaaatgttaaacgGCTCTAAGTTTAGCATATTGCTAAATATAGTTCAGAGGCAATGCTTTT--CACCTGGAGAAT----aatggtaaaaatattttaaaatgcatg---tatcTGAGAATAAGTTAATCTACAAGTTGAATTCTTTCtcctgaaaagaagaaatatttcactGGGAACCAAAGGAC-CTTAAAGGTGTCTCAAGTTTAGCCTTAGTCTCTCTGTAAGCACCAAGAGGACTGCACAGGAAGGTGGCAGGAGTTACTGCACATGGTTACTCACCATGTGAATACCATGAAGAAAGGAAGTGAATAAGAATGCTATGTTATGAAAT-TCACCAAGGATACATGCAAACCCCTGTGGGCCAATCAGGAAGGAAAGGACTTCCCTTGAAGCTATAAACCTTTGA--CAAGCTCCTTAGAAGCAAGCTG---GGCTCACTACAGTAAACGCCCCAGCAGAAGCTCACTTACCTAACTCTGAAAGGACACACTGCTTAGATAGCACAACACAGACTGGTTTGTATCTTACATGGATGCATATTTTCAGGGagtagacagatttctagaattCT---TCCTCTTATTTGG---GGCTCATAAGTGTCTGTGTCATGTTCCTTC--CCAAAGAAATGTGGGAGGatgtatcatttttcttctaattttg----caTGTTTT---------------------GAAAATGCTAGTTAGACTTACTAG----TCTATTTGTG------------------TGATTTATAT----ACGTTAATGAAAACTAATG-----TAGGTAGAAATAAACAG-------TTCTCTAAAATTATGCTTAATTAGATAA--TTGTAGAAGacaaatttagaaaatatgtaCCAAGATTGTGTAGTCAGATTGTTTAGCATGGATCTTTAggtttttactttattaaaaaaaaaaaaaaaactaaaacaatgcaCCATAGCTTAT-CCATTAGAAGTTTATAAGCAACAAAACAA------TATCCGAGGATTTACATTTAAAGA---------------ACAA------GTATGCCAATGCTAAATTAATATAACTAGTGAACTATGATGTATAATTTTAGTgagttctcatttttccttttttcaccaGATAACCAACTAAATGTGGGAGT-----TTATTACCTTAGAAAAGTGGCCTTTGCAGTATGTGATGAGTATATTTCCCAAGGTGT----AAGAACACTGC----AGGACTAC-------CAGCTGATAGCAAAACT---CCCATGTCTGCCCTCTCTG----GGGACTGCCT---GGCCTCTACCTTGCCAAAGTGATGTGACTTTTCCAGGAAAAAGACAGGACTCAATGACTAG----ATTTTGTG----------CAGCCCCCTCCTAGCAAGTTGCAAAAGTCTCCAGGGCTATACCAAGCTCAGAGATCTCCATGGGATGGTCCGAGCTTTTGGCAAGACTGCAT--CACAAGGCAGCTTCTCCCCAGCTCAGTCCTGCTTTCTCCCCTTCCTTCACAGGTGACCACCCTATAGTATGTTCTGA---AAAGAATCCTGA-TCCTCAGTGTCTGTGTGAGTTGACTTTCAGTGAGTTCTACAGTATGCTTTGAAGGTGCTGGTTATACTTTAATGTGACTCTTGGACAGTACTTACTCTCATCCTGCCTAGGCAGCAATGTGTAACTTGATAATCTTATTTAAATACAATTCAGCAA-TAGTCCTCACCTTCTTTTGATCTGGAATTCCTTTTCTCATGG------------CCCCTCTTCTTATAAAAGACTCATGAGAATGGATATCAGACT

a score=34696
s chr3           155007562 2843 + 160039680 CCCTGTGCAAAATCATTTTTACCCTTTCAACCTTGTCTTTAATGTAGAAATGGAAGTCCCATAATACCACTCAG----------CTGAGAACAGTAAGTAG-GCTGAGCTGGTGTCAAGCCAGAGCAGTGTTTAATCT---CGTAGAAAGCTGAGATTCTGACCTA-----------CCACTAAAT-GCTTGCT-CAGTGGGCATGTAACATCTT-------TGAAGTCAGTTCCTCACATTCACAAAACTCTCATGCTCCGCCATCCCATTCTCTTGCAGCTCT---CCCCATTTGGAGGTCCTTCAGAAAATATCTGTCTTTCTAACTATGTCCCCA-GATCCCCAGTACATTGCTGAAAAGTTCTGCTTCTCGTGTTTTATAACATATTCCATTTGTGTTCAAAGTTGCTAGAACAAATAAAATGCAGTTATACTGTGAAAA---AAAATCCAAAAAGGACACAAATGTATAAAATCCCAAATCATGGAATGAAAAAGGGTTGTAAATTATT------ATGAAGGGAAATGTATGGAATTTTTACATACATCCCACCTAATTCTTAATGTATTTATTGTAAT-------GTCAATATCAGTGCATAATTCCATTTT-AGTTAATATGATATAGCAAACAACAGGTTCTGCCTTGTTCATCAGATGGAGAACTGTCT----GGAGAATCCAGGCTGCTTGCCCTCTGACAGCCAATGTCATCTAGATATGC-----TAAGTTAAGTCTTAGAGTCCAGCCACAC-------------TGAC-CTGCCTACATCATCCC---TCTGCAACGATGCCTCAAGGTGTTAGTGTGCTGTTTTCTCCACTTTGAATGGCCCATGTCTAGCAGGGTGACATCATTTCCCCAAATATAACACAAGGACAATGA-------------------------------AAGAAATAAAAACTCAATAAAAACTGCTCAGAAAATCCCTGGTATGCTGATA-TGCTTGAGAAATAACTTCCAAGTAAC----ATAATATGCAGAAA-----------------ATTTTATTCCATACTAGACTGGGCAAAGAGAATGTGCTGT----GAGCAAATCTA-----GCAGGAAGTGTTTTACCAGATTGCTAATGTCTACTTG----ATATTCAAGTTTACAAGAGATTGGACTCATGTTGACAACAGGACGCAATAGCACGAAGGAGAATT-ATGCGTATATATTGATAAATCATGTAGGTAAAAGCAAACCTCTGCATTCTGTCATAAAGATGCAAGAAGCAGTCAGCATGGGTAGGGAA---CATGGATGGCCCCACTGCCAGCACGCTGCAGGTCAGGGAGGCTATGC---TTATAGTGGCAAGAAATTTGACATCTTTCATTAAATTCATGATATAGGAGAGTTTATTTTTCTTGCT-TTATTTCCTCGCCTGAAGAGCAAGACCTCACTCTGTCTCCTTCCACTTGTGATATAATTCAGAAAGAATAATATCATGTCTTAATTTAAAATGAGTGATGTGCTGTGGCATCTCAGGCCATTCATCTC-TCAGGGCTGGCAGCTTACTTTCACCACTTATCCTATATTCCAAAACACGTTTAAATTAAACACATATCAATGGTAAATCTGTCAATGCCTGCCTTATTTATGACACTATTAGAAGAAACATTGATGCCCTTTTATAAACAGGGATA-----GACATGTTTTGATTCCTTCAGAACTGAGATG---AAAGCAGCTGAAATGGACTCTGATTCGTCACCAAGTTCTACTGTTTTGATGACCTTCGGCATGGTTTACTAAACGTATGCTCACACTTATAAAATACAGACAGGCAGTGTCAACATA-GAGAAATA--ACTCCATTTTGTGTACCAAACTTGGAAAAGGCAAAATTATA--------------------------------------------------------------------------------AAATAACTCAG--------------------------------------------------------------------GGATTTGAAGGAAGAGAAAACATTGGCACAAAATGGTTTAATCGGATGTTTAGAATCTGACCTACCTTTGATTTATGATACCTAGAAAATATAGATGATTTAATCTCAAAAGCTGAAAGAGAAGAAACTGTTTAAGTACCAGCCTGAAGTATTGCAAGCATGCACACCACTAGCATATATTAGTACAAGCGTGCAAACCAAAAGACCACCTTAGTGCAATCATACACCAAAGCAACCTGCAGTAGTGCAAATATGCACAATGCCAGCATGCAGTAGTGCAAGCATGCACAATGACAATTTGCAGTAGCACAAGCATGCACAAGGCCAGTCTGCAACAGTGCAAGCATGCACGAGGTCAGCCTAGAGTAGTGCAATCATGCATAATTACAACCTTCAGTAGTGCAAGTATATTTACTTAAATTGCACATACATTTACATTCAAGAATGCACAGTTGATGATTCTATAATTCTTATCTAAAATATTTG---AAGTGATCAAGAAACCTT---TCTTCTAGCAATCCT-CATTTCTAGTTGTTCT-TCCTGATTGGGATATTAGAGTCTTAGTGCGAGCAGAGTTGGG---------------------tttctgcctttaaaataagcattccattgttgttttc---tgtgcctgttctaccctgtgtgctgtgtgagttagagacaggcagcttgtctctttaataaacttggaatcagactgagacaggacatcaggggtgatggatactctgtggtcctcacc----------tttcaggggccagacaagaacctg-------------------catcagcatgaggctcttggat------------gagtaagtgtatttccctt------------------------------------------------ggggagtaagta---------------------------------------------------------aTTTATAGTTAAACAACAGACAAtagagacttttaaaatacggtcacaacgtgtttgacact-----actgagaagtagagaaaatttctcctccctttgaaaccaagcaa--ctttgattggcttgattaatagagttcagtag--ggggtgttttgtagctctca-----aggtcataaaaggccatgaaacttctaacttatttattgaaatacaaacagttgtagccccctggcacttcataaaa-atatgactacccaggcttgttgtgagaaaatccaatccaAA
s HiC_scaffold_1 142006385 3038 + 233722169 CCCTCTGACAGAACATCTGTGTGCTTCTCATCTCAGCTCTAATACTGGAAGGAGAATTCCATGATTCCACTCAGAGAGTTTCACTCAGGAATAGTGACTAACGCTGA--TTGATTAGAGTGACATAGGTGTTTAAAGTATCCTTTGAAAGCAGAGATTTCGATATAGTGATTTAAATACACTGAATTACATGCTTCTGTGAG-ATATAG-ATCTTGGTCTGTTAAAGTCAATTTGTCACACAAAAACAAGTCTTGTGACTCATGATCTAGACCCAATACACTTCTGgtataaaagtaaaaatctttTCAAGAATATTTATGATTCCTACAATGTCCCCAAGATGCTCAGTGTGCTGCCTACAGTTCATACTCCTC----------------------------------------AGAAGGCAAAAT--AGTTTtacaatgaaaagagaaagttCAAAATGGAAGTAAATACATAGAA----------------------AGGTTGTACGACATTTTGAAtgtgaaggaaaagaaatgaaatttgaatttgtat------------ttcatgtatttattttaactcGACACATTTATAATGTTCCACAATTCAATTTTCAGTTAAAATACTCTAACAAATGTTGACTTTTGACACTATAAGAAGACAGAAGAGTCTCTCCTAGAAGAACT---ACTGCCTGC------ATCTCTAGGATTATTTCTCCACACCCCTTTAAGTTAAATCTCAAGATCCAGTCACGAAATGTTGCTAGGGTGACTCTATCTACACCACGACGTGCCTG-------GCCTCTCTGATTTAA---GTCATTTCCTCCACCTTGAAT--------------AGGGTGAGTTCATCTCCTCAactataaaatgaggataatgatACCACAAATCTTGTGtacttattttgagaaaataaagagataatcAATGTAAACTTCTTAGAGAATACCTGCTATACTGATAACACTCAATGAAACACTCCGTAAAAGCTGTTATCATAGACAGGAAGCTTAAtcgttttttatattttacttcacAGCAGTTTGTTCAAC---AATATACTGTTACTAAGGAAATCTACTCTGACAAAAAGTACTTAA--AAATCACTAGGGGCTACTTATTTCATATGTAAGTTTGTACAATACTGAGCT------GACACCA--AAGCAACAAGATGAAGAggattttattgatatatatttattaattatctAAGTAAAAATAAACCTCAACATTTTGTCATAAAGATGCAAAAGCTGGCTACCACAGGCCGCCAAACACATCGCCTGCATCA--GTCAGCACAGCTCAGT---GAGAGACTACACCACTTGTGTTGGCAAATAATGTGACATGTTTCATGAAATCAATGATTCATGAgg----ctttttattgctgtttttttcctttctgaagtgCAGGACCTCACTCTGTCTCTTTCCACCTCTGGTGTAATTCAGGAAGAATAACATCAAGTCTTAATTCACAATGAGTGATGTAGGACAGCGTTTCAGATCATATATCTCTTCAAAGCTGTCAGTTTTCTTTCACCACTTTTCCTATATTCCAAAACAAGCTGAAATTAAACAGAGATCAAAAATAAATCTGTCAATTGCTATGTTATTTATGGCCCTGTT---AGAGACATTGATGCTCTTTTATAAACCAAGACAAGACGGACAGTTTCTGATTCCTTCAGAATTAAAACAACTAAAACATTT--AATGGGTACTAATTAGCAATGAGATATCAATTAGTAATTGATCTTAGATAATGTTTTCTG---GTGT-CTTTCACATAAGGGGCAGGGAAATGTGTTCTGTACAAGTGAGAACTACGCCTCCGTATTTCATCCTAAACTTGAAAAgcataaaattatataatcagGAGTTCTTTTATGAGTCCGTGTTTGCTGTACGTGAAATTTAGATTAGATTGCTCTTTCAGAGTAGATACATGCATATAACCCAGCTTGTTCTTTTTGTAATCCTCTTCCCACCTACttttttccctccatttctcaatcccctttgcactgagcatttaaaagcagaagaa--attGCAATATGATGACTTAGCCAGATCCCTCAAACCAGATTTATTCTTGATTTATGGTATCTATAAAATTCAGATAATCTAACTTCCGAAATTGAATGA----------TCTAAAAATTAGCACAAAGAAT----AGCATG------------------------------ATAATTTGAGAGGCTCCTACTGCGCATTCA---ATCCAAGGCTTTAGCACTAATGTAGAT--------------cctccagtttt--------------------ttt---------------------------gtttgtttctttgt-------------tttgttttggag-----------------------atttGTTGTTCTACAAATATATGTACTTAAA---CATACACAGACACTTTCAGACATATTTAGTGTTTTACTTCCGAATTC--ATAAGCAACCCTTGGAAAAGTTACTAAGAGATCTGATAACTCATTGCAGTCATCCATTACTATTTGTCCTAGACTAGAAGGTGCATTCGAGTCTTTAGAGTAGCAAGGTCAGGTCACTGGCTGTATGTCTCAATTTTCTACCTTTCAAGTAAGAATGCC--TGTTCTTATCACATACACCTTTTCCACCAGGTACCCCAAGAATGTAGGTGGCTGGTAACTTGTGTCATTAGTTTAAAAAGGATCAAATTGAAACAACTCATAACGGAGGAAGCAAACTCAAGATGCCTCACACTCACTTGAGTCTGATTGATTTGATAAGATCCTGGAATATATGCATGATATAATAATAGAATGAGGTTTCTGGATGTAATTTGGAAGGCATTGATATATTTTGCTTATCAATCCAGGTTAATAATAtattcccaggggctggggatttagctcaggggcataagtgcctgccttgcaagcaggcagttgtgagttccatccccggtactgataaaaaaaatacatatattcccAAATAACAGACTATGGAGGC--TTAAAACACAGTGGCAACTTCTTTGATGCTTACTCATTAAGAAGTAGAGTTAA-------------TGAAAATGGGTGAGCTTATGATGGTTTTAGCTAACAGAATTCAGCGGAAGTGATGCTATATGACTTTCAAAGCTAGGTCATAAGATTCCATGCAGCTTCTAACTTatttattaaaacacaaactCTTGTGGCACCAAGGCATATTACAAGATATATGACAAGCCCAATATGCTA-AAGTAAACCCAAGTCAAA

a score=12059
s chr3           155016119 1091 + 160039680 GAAGGTCTTACTTTTCTGGCAATGCCTAAGGTAGTTATGAGAAGTAAAATAAGAAATGAG---GCTTAAAAGAAAATCTGTGAGCTCTCACTGTGATCTTCTATAATTTCAGAGCTAGCAT--CTAGATTATCA--GAATTATCAT-----CATTTTTTATGGTGTGCCCTCTTTTCTAGATCAGGGACTCTCCCT---GGCCAGCACAGCCACAGCATTCTCTGTATCATTAATCTGAGGGTTGTGTGTTTAGTTGAGCAAAGT-TTAGGTGAAAAGATAAAGTCTCCAG------AGAGATTAGATTGCTTTAATATCGTTCTATAAATGTGGAGTTATTGAAGATTGGAACACGCATGCATGACCTCAAGATCCCTATGTGCTGTGGTAGTGTGTAGTGTAACGGATC-CAGGCTGCTAGGA---AGGTGGCTGCATGGGTACCTTGCCCTACAAATCCAGAACAGAATGTTGTACCAGACAGAAATATCATCATGTTAGACTACAGACAAGATTATTGATTAGAATGGAAGTGAGAAAAATTCTGCCAAGCCACAGAGAGATGTGTGCAGACCTCCGAGATAAATGATG---CCCGCACGGTATGGCAGACTTCTGGCGTT---GAGGTCAATGAATTCAAACC---CTCCTCTGGATTTTCAGGGGGAAAAATCTATCATTAGATGAAGTCAAATTTCCATCTCCTCTTTTAAACAGGTCAAATGCTCACTAGAGGAGGAGAGGGAGTGAGGCAGATTTTAAACAGAGAATTTTAGGG--------------CATTCCTA------------------------------GGCCATACATTAAAT--CTTTAGAAGACTCTAAAAAGTCAGTTTTAAAAGTTGGAATTT-----TTTACATCCATTTACTATTTCTTTACTCCAAAGACCTTCATTTGAGTGTTCAACATCTTTGGGTGTTTTTTTTCACATCTGTAGAAAAAA-----------AAGATTTTGCTGTGATCTT-AAACATTGCACGTGGAGAAATGCAGTTGAAAGCT--TCTCACTTACTCCTTCAGCTC-------TATACCTTTTCCTATATTACTGAATATGCCTTCTCATTTGGTCTTT------AAAACATACTTTAGAGtttt-----------attaaatcatatatattatatatatatatgttatataCTCTGAATATA
s HiC_scaffold_1 142015749 1158 + 233722169 GAGATTTCTACTTTTCTGGggatgtatataaaaatattaagcaattaattaaaaaattaaatagct--aCAGAAATCCAGT---CTTTTACTATAAATCATTACAGTTTCAGAGCT-GTATGACTAGAGTTTGAAGGAACCctgataattacattttttatggaGTACCCTTTCTT--AGCCAAGTGATGATCCCTTTGGAATAGTATATCTAAATCCTTTTGCTTGCTGTTGACATGCAACTTTTGAATTCTGTTTGGTAACCTGTTAGAGTAAAAGACATAAATTCAAGTTGGAGAGAGAGCAGATTG----AGAGTAATTCTCTAAATATG----------AGGTAGAGGCAGGTATAAATAATCTGAAGATCTTTATTTATCTTGACAGTTCACA----AATGGATCACAAACTATCAATGCTGAGCTCTCTGTGATAGCACAGGGC--TGAGAGTCCCTAACTGA-TTTTATGCCAGAGTGCACAATTCTCATGTTAAATTGGAGACAACATTATTGATTGGAATGGAGATTAGAGAAGTTCAGTCAAGTCACAGGGAGATACATGCGGACCTGAAAGACTGGTGATGTCTCCCGTG-GGTGTGCTGGACCTCTTATTTTGCAGAGGAGGATAAATTTATACCTTGCTACTTTCTTTTATTAGGGTCAAATGT-TATTGTTAAACAAAGTC------CTCCTTTATATTTCAAACCTGTTGAACATATA-GAAATGAGGAATGGCAAATAAGCAGGTTTTCAACATAAAAGTCTAAAGATAAACTTGGTcaccatttttaaatatttttacttttatcaaaGCAGCAGATAGCCATACTTGGAACAGTTTAAAATGGCTCTACAAGGTTGATTGTGAAAA--GTAATTTTctagtttactttttctta-tattcctttA-TCCAAAGATT---------ACGTTTGCTGCTTTTGGgccatttttattaaattaacaaaataaattatttcaattcatattctttttttctattcaaaTACAACATATAGAGAG----GATGGAAAGGCAATCATACTTACTCCCTTATCCTAAACACATCTGTCTTTTGCCATTCTCttatatgtg-attttattttgatctatatttaaaaaaaaaacttttccatttttacaaGATAtgattgacaaataaaaattacccatatatatg-tatatgttttgtGTACA

a score=43469
s chr3           155019138 2864 + 160039680 ctatctatgttgtactaattgggcctgggctttggagtgggataactctccccactatgtacaattgtccttcctaacttcttcagggctctttcttttatttcaccaatctactctgatgtgctggcatccctcctggagtcctaagattttgagaaggtattttcttgtatgaatgcatgt------------tcaagttcatatttgtgtgagggaatgaacatatgggattcccattgttccattatgaatgtcACCTGCTGT------------GATACTCACTTGAATTTATGTGGTTTTTTTAAAGATTAATATGTATGAAGGTATTTATGAAAATGTCTTGTGATTTCACACCCTCAGTTCTTCATGAACAGTGTCATTATAATCTATGTATTCTGCCTTTGAGGAAGAGACAAGTAATTTC--CCTCATACTATATAATTTCTGAAACACATTTAAATTCATAAGTTTAGTCAGTTAGCAAACACTTATTAAAAATCTACTGTAAagcaaggcagagaggtagatgcccataatcccatcaccgaggaggctgagatagaaaggtcataggtttaaggcctgagctacctagcatggaccctgttccagaaagaaaaaCGAAAAACAACAGTCTAAATACACACAAAG-CATGTTCCATGTGACTGTGAGGTCTATGAAGATTTTATAACCATGTTGTTAACATGCTCAGAAACCTATGTAATAAA-TGACCACGTCAAGCCATGCTTCTGAGGCAGGTCATCTTAAATGATAGCAGAACAGTACA--TAAAATGCTCTTGTTGATTAGAAGACAGTGATACTTCAGGGTAGAGAGACTTAGTGGTGTGATGAATCCAGCTTTTCACTTTGGCTTTGGGGAAACTTAAAAGGCA-AAGCAT---AGAGACTATATTATGATAAAAGCAGAGTACATTGAAATGGGAAATGTTAATTTCTGTCACAGCATGTCTTGTGGAATGATG--------GCTTCTGCCTTCACAGGAAGAGACTCTGGATCATTCATTCAGGGAGCTGGAGCTGGCAAGGTTCTGTCAGGCAGGAAATGTCTTTCCCAACATCTTGTTTGATAAAACCTGAACATTTTCAGGGTGGTGGTGGTGGTGGTGTTAGGGACTCAATGGAGTGTAAGCATG-----TTGTACCCAGGCCTGACAAACCAGGGTATTGCTGCA---------------CAATAATGTTGTGAAAGCAGAGAAAATGGAACATTCAAGGCAGTTCTGGG-AAATGTTT-CCAATCATTACC-TTCATTTTGCT-------AAATTTTACCTAA-TCTTCTGGATAGCTCAATATATATCTTTTCAGGAGGGTCTTACATTGAT----------------GAGTTCAGAG-TGTGGAAATATACCAGTTT------TGGACTGTTTGGTTTAGACCTAAAGGAGTTGGAGTCCAGCAACCTTGAAGGCATGGGGAGAAGGAAAA--------GTAACAACATTTCATATGCTATAAAGTCCCACAG--AACTGCTTCTCAGAGCAGCTCCAGAGCTGTGGGCTCCTTCTGTAGAGCATGCGTTTTTTGTGATACATATATGCTCATCTGATACACGATTGTGCAAGAACAAACACCAGGAAGTAGTGGTAACGCATGCTTCTGAGGAACACACTAGAAGAGAGATGCTGCTAG----------AGGTAACAATGGAGAGACAGTCGCAGGGCTCTAGACTCCTACTCTTCCATCTC-AATCCCCGCATGCCTCTGAAGGAT-GTCAGAGAGTCCCCAGAGGGGGCTACAGA---GAACAAGTCATGTGATAGTCTTAGGAGGCCCT-----------AGTGTTTCATCACAGACTCCTTGTAAACTATCTCAGGTGGAGTAATTCCTGATAGAAGTGGAGCACTACTCACTGCGCATTCACAGATCACACTATGTGCCCACACATCACTGCATCCACAGATTGGGGGCAAATATCAATCAC--TCTAGAGT-TTCAAGATCAAGGGGAAGAA-----TGCTAGTTTCTAAACCCCAAAACAAAAACTTTCTGGTATTCTAGTAATGTGACTTGACAAATATACAGAGACCTTGGTTTGTAAGG-AACTGTTGAAATCCTAG------ATGTAATA--------------------CAGTTGCATGACAGTAT---------CCAACAACAGTTAGAAG-GTATAGCAAGGATTATTTCTACTTGGTTGATATCTCACACA-CACTGtgtgtgtatgtatatgtatgtgtgcatgtatgtatgtatgtGAATACAAGTCCATGAGATAGGTGTGTATGTATTATGTATGTGCTTGTAGAATGTATAGAGAACTGAGAATGCTTGAATCAATATTAGCACTTAGAAAAACTGGGAGAAA--AGCAGATTTTCACAGGACATTAACTGGTTACAAAGG-CTGTCTCATTTTGCGTTGATTTGATTAGAAATAATCTTTGAATCTAATTTCTCAGGTAATGCCTCTTTCGTCACATTCCAGGGTAGAAAGCTGATTAACATCTAATTTTCATTTTTATGAGCCTATAAAGCTTTTCTGGCTTGTGTCCTTCTATCT-ATCTCATGCCCAAAGCAATACTTACTGTCTAATAGCAGCTAATGCAGGCTATGTCAAAGGTCT------------------GAGTGGTGCTAGGGCTTTCTCTTTT----CGTGTCTTACAAACGATACATGCTTGAAGCGTTGCCTATGGGAGTGTAAAATAAGCTGATTATGAGGTATGACATATTATTCTGTCTCAGTCTCCAAACCAAAAGCCTAGGCAGGGAGACATGGCCTCTGT--CTTTAATAAAAGAAGCCCCTGCAACATGCAACACA----ATAGTTGGGAACACAGACTTTCTGGTTTCACCTTATGAGAAAACCACTTTTGAATGCCATTGAAGTTGTAGTGATCCTAAATTGGATCTTAGCGATGTAAGACTGTGGGTTTAATAAAGGTTTAGCTTTATAA------ACTAACCACATGACACATGGATGTCAGGTT
s HiC_scaffold_1 142020600 2766 + 233722169 CTGTGTACACTGCACTAA------CTGGGCTTACAAAAAGGGTAACTTCCCCTCCCATATAAAACTGCTCTTCTTAATTTCTTCaatgtgatttttcttatttctttttttggttc--aaTTATTGTACTCTCTTTTAGAATGCTTAGCTCTAGTGAAggagtgtatgtgtatgtgtgcatgtgtgaataGTTGCCcaaattattatttctgtgaaagaaC-AACAC-TAAAACTACTATTCTGCCATCTTGAatgccatttaattttttatatggactgatatttatttttattt-tatagcttttatGA-GACTAATTTGTATGGAGCTATTCATGAAAATTGCTTGTGATTCTGTAAGCTATTGTCTTGAAG----GTATCATTATAAT----ATCTTCTGCCTTTAtggaaatgagaaataatttcttcCTCATCCTGTATAATTTCTGAAACAGTCAAATAATCATAGTTTTAGTTACtcagaaaacatttattaaaaatcta-------------------------------------------------------------------------------------------------------------------------------------------aCATGCAAAGACACATTCCTGGAACCCCTTAAAACTATGAAGATTTT-TAAC-ATGCAGTTCTTATATTAAAAAA--GGTGtaataaaatgatcaaataaagCCATGCTTATAAGCTAAGCAATGTTACACACCAATTGAAAAGTAAAGCTAAAATGTTCTTGTTGTTTAGACAATGGAAACACTTC-TGGTAGAGAAACTCAGAAGCTTGATAAAAGTGCCCTTTTAGTTCAGCTTTAAATATAGATGATAGAAACAAGCAAGAAAGAGTCTATACTATGACAAAAACACAGAACGTTTTGATGGG---TGGCAGTTCAT-TTAGAGTGTGCTTTGCAAAATGAAGCTTTTCAGGCTTGCAGCTGCAAATGTAAGAAAACTGCATCATCACTTCTGAGTTCCTTGGTAGGTGAGTTTTAG------------------------------GCTTATCAAGACTAACAGACTTTTAGGA-------------GTTATTA------CAATGAAGTACACACAAAATGACTGGTGCACACACCATAAGAGTCAGGGTATTATTCCAGTGAGCTTAGGAGGATATTGACAGTGTAAATGCTAAGAACATT-AATATCCTTGATATTTCTGGATAAAAGTTTGACATTTATTATCATTTATCCtacttaatttgaaatttttcccaACTCTCCTGGATAGCTCAATGTATACCTTT-CACAAAGGAATTATGTGAATAGTTCTCCAATTCCTAGAATTCCTAGATGTGGAGA---ACCAAAGTGATGATTGGGGAGCTCAGCCTTCAGTAAAGTGAGTTAGTAGCCTATAATCT----GCTTTAGTATGCAGAAAAAATTACTGGGTGACAGGGTTAAAGATGCTACAAGGTGTTATGGTGAATTGCTTCTTAGAACAACTGAAAGGCTTTGTTTGATTCCCTTAAAAATTCCTTGACTTATAATAACTATA--CTGGTCTGATACACAGTTgtacaaaaacaagaaataagagGCAGACGTGCCAAGGGTCCTTGAGGAATATCCCAGAAGAGA--TGCTGTGAGGAGGATGAGAAGGCAGCAGCTGCAAGG-AGTCACGTAGCTCTAGACTCTGTCTCCCTCAACTCTAACCTCAATAAGTTTCTAAATAGTCTTTGGAGATACATTAAAGGTAGCTATCAATAAGAATAATTCATACAGTGTTCATAGGAAAAgatcaaatgttaaaaatatttgatgattaACTCCCTAAACACTA-----GACTGAATCATACCTGAGATAA----AGTAACTCCCACC---------------------TGTCTCTGT-TACTACTGTACTTAGTGGTCAGG--CAGGTAACACTGACCTTCTAGCATCTTCCTAATTGAGAGAAAGAACTTTTTGCT--CCTGTGAAACCTGAAACTTGGAAGTTCTGCAACTCTGAAGATGCCACTGGAGCAAGCTATAAAAACCTTGAGTCTTAACTCAAATGTCAAGTTCCTGGTAGAAAATATAACAGGAAAACATGAAGTTAAGTGTAGATGTTTGAGAATATAGTTAATTCTTATAAACagctataaatatataatacacattATTTCTGCTTAGTCAACACATTGCAAAAcgttatatctatctatctatctatctatctatctatctatctatct-------------------------------atcatctatctgtctgtc-----tattaATGACCCAGGGTATTGGTAACAAACTTATTACAGAGATGAGTTGATACACATAGGCAAAGCAACTCGATGCACTCAATGATTAGAAAGGGATGTCTGATTTCAAGTTGATTTGATTAACAATAATCATTGaatataatttctcagataatgtttctttcatcattttccaGGGCATCCAGCTGATGAACAtctcatttgaatttttattagtacctaatttttttcttgcttgtgtCTTTCTACCTTACCCCAT-----AAACAATACTTAATGTTTTACTATACCCAATACAGTCTATGGCAAAAgtcttgagttaaaaaaaaaaaaaaatgacatttaagctGATGCTTTTACACCACTCCTTAACATTGATTCACGCTTAAAGCATTGCCTCCGAAACTGTAAGATAA-CTGATTACCAGACACAGTCTTTTACCTTGTCTCAATCTCCAGACCAAGAGCCTAGACACTAAAAGACTGCCTCTCTACCTTTAATCAAAAGTATTCTT-CAATATGGGTCACATTCAGTAATGGGGGACACAGA-GTTCTTGTTTCTGCTTATTAGAAAACTACTTTTGAAAGCCACAGAACATGCAGTGCTCCTAAATTGCATCTTACTTATTTGAGATTATA----CAGTAAAAGTATAGCTTcactaaaaatcaatagcaaaatgAACCACAGAAATTAGGCT

a score=17078
s chr3           155023895 821 + 160039680 AAGAGGCTACTGAA-GAGGCCCATCAGCCTCCAGTTCAAACCTGACAAGCATCA--CCTTGGTGTGTAAATTCTTAATTGTTTTGTTTTGTTGTGATTTGTTTGGATTTCAAATAAAGTT-------------CACAAGATACTGGAGGCATCTATGGTTCTACTATGTTAT-AAATTCATCAGAGAAAAGAAGAGAGCATATGAGC-----AAGATAGAGAGGCAGAC-ACACATTGTAATT-TAAGCATTCTCTTGTCTGTGCCTCTGGGG--AGAAAACTAAAGCCATTACAAAGGAAATAATGTGGAGAGCCTTACAAGCTTTTTTGGTAAACAGAACTCTCTATTGAAACACTGAGATGATTTAGTTAAGAATAGATTGAAAAACCATCAACTACATTTCAGTGAAAACAGAAATAAATTCCAAAATAACT-GGAAGCGATTCTG-AGCCATGCTTGGGTAAGTGTTTACAAGCTGAA---CGGGGAATCAGCAGGGCAGAATACCTCCAGTGTTGCCTCACCTGC-----CCATACTCTCTCAGTATG----------TGTGCCTATCC-----------------------CCTCTCCACATTGCATA---GGCATCCTGGCTGCTATCTGCTTTTCCTTTGCTACTGCAAAGGA---ACCTACAAATGCTGATG--------GTATACTGGCAGCTGCAGAATGAACTGTGGGGAAACAGGTTTGGCAGTGTTCCACAGATCTAAGTATTTAGCTACAGAGCAGTCTATGTGTTTGgtgtgtgtctgtgtgtctgtgtatctgtgtgtctgtgtgtcgtatatatgtgtgcatctgcgtgtgttctatgtttttttttgtgtgtct-ctatgtgtaatcatgtgtgtttttgtgtat
s HiC_scaffold_1 142027959 829 + 233722169 aagaaaatcttGAATGAGGCCAATTAACAT---GTTCAG----GACAA-CATCATCCCTTCAGGTGTTAAT----GGTTACTGAGTTTTGCTAT-------TCTGATTTCAAATGAAGTTAACATTGCAGGTCCACAAGAT--TGGTGACAGACCTGGCATGCCTTTGTCATGAAATTCAT--------------GAGCACCTCAACTCTAGAAGAATAAGAGAGAAACTACATTTTATAATCCTACGCATTCACTTCTTTGAGtctctgggggaaaaaaactgaagccatt-taaaagaaagaatgtagAG----TTAGAAGCTTTCT-GGTAAACAAAACTCTCCACTGAAACATTTAGATGATTTAGTTAAGAATGAACTGGAACAACATCAATAGCACTTCcttgaaatcagaaataaatttcaaaataactaggAAGCATTTCTGAAGTAGTACTTAGATGAatgtttaaaatctgaaaattggAGAA-------GGTAGAAT------GGAGTAAATTTACCTATGAAAATAATACTCTCACAAGGTGAATACGAAACTATGCCtttctgtgaaaaatgaaataccttaCGACCTCTGCGCACTGTATATTGTGTTATCTGGCTCCTACAAACTTTTTGTTTGCTGCTGTGAAATAGTTGTCTACAGATACAGATAATTGATTTATCTCCTGGTAACTGCAGAAACTATTGCATAAAACATCAGCTGACAACTTTTTGCAGAGtttcatgataaaatataaagtatcatACACTCTtcgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-----tgtgtgtgtgcatgtacg-----------------tTTGTGCGTATATTGTCTGTactcatgcatttatttatttat

a score=15036
s chr3           155026365 681 + 160039680 ATTTTTTTAAGTATACAAAAGAAAAAAAAAGATTAGAGCTGTGGTTTAACAGTGACCAGGGTAGAGTCTCATATGATTAATTTCCTCATTATCTGAATGCCCTACATAGT-------GGCTATAAGTCAAT--TTTCTAATCCTTAGTCTTTTCACTGTAGAAAGTGGGGTTAACATTAGTTAT-TCAGAGAGGAGAGCAAACAGTATATTATATCAACAACAGAGGAAGAGCGATCCTAAGCATCTCCA-------GTGTTCCATGGTCAAGAGACTGTATGATATATGTGTATATGTATATCCAA---AGAGAA-AGGGTTCAATGCATGTTTATTGATTG----------TTTGGGCCTTTTACAAATCAATGTATGCATATGAGTTGATAGACAGATAAATCAGAGAAATATTGGATCCAAATACAGCCTATGTTTTCCTCCTTCTTACAGCCTAGTAAATTCTCATCTGAGCCTC-TGCTTCCATTCTGCATACCTGAGAACCTGTAGCCTGTGCGATCTTCCATTATTGAAGTAGACAGCTGCCTACATCAACGGAAATTTCATTGTAAAATTGTTTAACAGAATGTATGATTGCAGAAGGACAGACACACTAGAGACACTAATGGAGGGTTTGGATTTGGTGTGTGGAGACCTGTCGAAGAAGTCAGC----------ATCGTGCACTGTTTCACAGA-AGATGTGGGTGACAAAGG
s HiC_scaffold_1 142029098 667 + 233722169 atttttttatttaca-------aaactatAGAGTGAAAGTGTGAT--------GGACGGGGTTGAATTTCATCTCACCA-CTTGCTTATTGTCTGAATGCCCCACGTTACTCATTTAAGCCTTACGTTAGtcattcattttccttattttcctcACTG--ATCCCTGAGTTTACCAGTAACTATGTCACAGGAGA-----AAAAGTATCGC---------------------CCAATTtgagcacctttttttttttattttccatgtcagACAGA--GCATGACGCATGCCTACCCCAAGACCCAACGTGGAGAAGAGGGTTTAATGTATGTTCCTTGATTGATAAATGAATCTCAGCCCTTTGATAAAGCAGTATATGCACATTTACT-ACAGATGGATAAATCAGA--AGTATTAAAGCCTCAGACAACCATGGTTTTCCTCCTTCCCAAAGCATAGTAAATTCCAATTTGAGTCTCAAAATTGTAGTCAGCACGTCTAGGAATCTGCAGCACATGTTCTGTTCTATTATTGAAGGAGACAGCTGCCTA-GTCAATGTAAATTTTATGATAAAACTGTTTAATAGAATTCACAATTATGGGAGGACAAACACTCC--AGACGCTAATGGAAGGTCTGAGTTTGATATGTAGAGA-----CAAAGAAGCCTGTCAGGCTTACAGTCCTCTATTGTTGCTCAGAGAAAAGTGGGCAATAAAAG

a score=24443
s chr3           155028518 2097 + 160039680 CCAGTTCTTCTACTAGGATTTCTTAATATTTATGGTTCTAGTTGAGATTTTA-TACTTTCAATAG----------GAAAGAAGAAAACCCTTTTTATGTTGCTTTACTGAGATTTTTGTTCTTCCCCATAAACAGTGCAAACTGATGCTATACATTTACAACCATGTCCTGGAT-ATCTATATTAATTTTGTAGTGAGTAAGATTT-TGTAGTAATGAGAAACAATAAAATAAAGGAAAACCTTTTCTTCTCAACATAATACT---------GTTACCAGTAAG-GACCTGAGGAGTGGCATCATTAGGAAACATAGCTCAAATGTATTTCATAGAATTTACAGATGGCTTTAT---------TTGTGTCTCTGTTCACACTTGTTTGAGAGATGAGGAAAGGTAGAGTTGGATTCTGGATATGAAACATTTCAAAAATAACTA-----TTTAATGAGGAGGTGGAAAGCTGC--TACTTATTACTCTAATGAGTTTCGTAAGCGGGTGCGTCT--TAGCAGAATATGAAAGTGGTGGGACTTTGAATCCGATGACCAGAATTCC-AGACAGAATCTGCAATCAACAACTCTGTAACTGTAAGAAAGTT-TCTCTCAGGAGACATGGTGTGCTAACTAATTTAGCAGGGACAATAAAAACCACTCGAGTGTG---TACAAAGTTAGCCACATGTTTTCACAGTGGTCTGTTTAAAATGTAATACTTGATAA----AGTCGGGACATGAT-CGGGTACCTTTTCAGGACTTTAT-----CTTGCTGATGATGCATCCAGCATCAGCACCCACC------CCCTACTGCCTGTGATTACTGCAGCTCCCGTGGCATCTAAGCT--CTCAGTCTCCATCCTGTGTGCTTC--TGCTCTCAGATCTGTCTCACTTCA----CTCAGGCCATGGTGTGAGCTCTAGG---------TCTCCATCCTGTGTGCTTCCGCTCTCAGATCTGTCTCACTTCACTTAGGCCTTGGTTC-AGGATCATGGTCCTTCAGAGGCT-----------CTGACTTATTATACCCACTTCTCCATAGTTGTCCGTATTCCAGT-------------------------------GCTCTATTGTACTCACTGGCAACTCAGatt--------cttttcttcattgtccgactc-ttgtttgtacctgtgccccacagaaacagagacgttgtctattgtcttggccctgtc----atcccagcactcagaatagtgtatgaagtttatttgtacttaataaatgttttttTCAAGTGACATATAAATGGAAAGACTAGAGAACAGACTTGCATCTCTTCTC-ACTCTGTAGGAAGCAACCTTCAGAATGTTTTGTGTGGAA-ACTTTGATTAAACACTGTAATAAACCTATAGTTATTTTATAACAGttgaagccagaatcttgcatgtgtcaggcaataatctaccactgagtttcagccAAATCCTTCtattactattttccaaataaagaaagcagggcatgagagtcagtaacttcttcaaagAAAAACGAGAAAGCTGTGGCAGCCACACTGCCTGAATGCAAAGCGTTTGCTCTCAATAACAGCACAGCACCTCTTATATCCAGACATCTTTATATTAATTGATGCTTCAGTGCATTGTTACATAATGCATGGAACTCAGTATAAAATCACTTACATATAAAAT-CATTTACATAGCAAATTTTACTGTCAGAGTAAATGAGTGTGTCCAGTAGCTAGAAAAACAGAATCAGTTCTAGGGTCCGGAAATCCAGTGTCTCACACAATGGCATTCAATTAGAAA--------AGGCGGGTAACATTTTTTTCTTCTGACTTGAGGGAAGCAAGACTCACCTCTGGGTGCCCAGCTATTGCAGCGATGTGGAGGGCTGTGAGGCCGCCATATCCCGCTTGCTGAACATCTGCTCCGCTATGCAACAGTGAAGTGATAAGTTCCAGGCTATCCTGTAATGAGATACAACGTGAGT-GTTTTTTTCCACTCACAGCAGATGGTGAGGCTGTGCACAAGATGCTGTTGATTTCCTGGTTATATGA-GGCTTGGGTGTTCAAAGAAAGTCTAAGTTCGACTTCTGA-GAAAAGCTTGCATCAGCAAGC----AGTACAGCTCAGGTGGCTGAGACATCGGATCAAATGGTAGAATGGAGTAGCACCCATCGGCCCT-TGCCACATAACTAGGAAAGGTAGAAAGAGT
s HiC_scaffold_1 142031778 2091 + 233722169 CCAACTCTTTCACTCAGATTTCTTAATGTTTACTACTCCATTTAATTTATTGCTGCCCtcaactgtttcttttttgtgggaAAACTGTTGTATTTAAGTAAGACTAATGgggttttcccttttctcctgag-----------TAATACT-TATATTCACAA---TGAATTGCATCAAGAAGatttattttctgagaaataaaagtgatatagtaaaaactaaaaatatcatgAAGGAAACAGTTTTGCTTTcaatatgatattttaatatttattgactgcAAGAGCCCTTTGAAATGACACTCTTAAGAGAAATATGTCA----CATTTTATAGATTTTGTTTATGGTTTTAGAAGAAGCTATTTTGTCACAGTTGGTGGCGATTTGTGTTAGTGAAAAAGGCAAAGTTTAATTTACAATATGAcaacttgcaaaaaaaaaaaaagcctgtaatAATGAAGATGTAAGATGTCTTGTTTATTACATTACTGAGCT--ATACATTGTTACCACTATTGATAAAGtgtgaaaatgataaaatcttGAGTA-GAAGAGTAGGATCCCGATGTAGCTCTTTTTCTCAATGGCTCT-----TGAAAGTCAGTTATGTTACAAGagctttgattttatatttatcacAGCTTTGACAATAAAAGCTATTTTATTAGGATTTTTAAGATTAACCA-ATAATTTTCTAGTAGTATGTGTAAAATTAACCCCTTGATAATTATAGTTAAAAGAGTTTACAGAGACCTTCCCATGACCTTTGAAACACTTTCTGATCTGGTTTTCA-----ATCGCCCACCTGACTTCTCTACCACTC----TGACTCTAGCTCT-GTATTACACTAACTAGCTCAGTC--------ATATGCCTCGATGCATTGAGCGTTTTCATGCCTCAGAGCCTTTGACTGTGCTATTAAACTTAAAATAATCTCCTCTCC-TTTTGTATGGCt----------agcattttaatttcattatggtCTTTGCTCTAATATCACCTTCTTTCAGAGACCTTCAGTCTCAGCTTACTTAACATAGTAGCTACTTctcatttctctgtttttcatttaatgaaaatttttaaaaatcatggtaaAGAGCTTTATAGCGCTATTTGCTATATAACattatgtaacattttcttttattggcTGTCTTGTTCTTCACAACGAAAGTCCACAGAACTAGAGATGTGGCCCAGTGTGCTGACCCCTCCCACTATCGGAGCATCTGGGACA-----------TAACTGGTGTTCAGTAAACATTTTCAT-----------------GAGGGATGAGTAAGAGATCTTTCATTTAGCCTTTACCCTGTATGAAGCAGTTTTCAGAGTGCTTTATACAGACTGCTCAAATTCCTTATTAGAATAAGTCTACAGCTAGTTTCTAAGGCTCCAACCCAGAGCCTCA-AGATGCTAGCAAGTGTTCTACAACTGG--CACAATCCCCTCCCACTAATACTGTTTcccaaatgaagaagacag------aaagtTAGT------------------CTGGCAAATTTTGAAAACTGAGCTGCTTGATTCCAAAACCTATGCTTTAATTACTGCTACAAAGCCTCCTAT--CTGGCCATttttatagaaattgatgtttgactacatttttataatatgaaCAGAACT------------------ATCCAAAGCACACTGATATAGCTAAATTTATTGCCAAA--AAATTACTTTGTTCAGCGGCTACAAAAGTAAACCAACACATCAAATCTGAAAAATCAGCATTTAAAA-AGTTCCTCTGGGTTGAGAGGAACCCAGAGCTAGGTAACCTTTGTTT-TCATGA-GTGATAAGAGCATGACTTACCTCCAGGTGACCAGCCATGACAGCAATGTGGAGGGCAGTGAGGCCAGTGTA----------------------CCACTGTGAAGCAGAGAAGTGATCAATTCTGTGCTGTCCTATCAGGAAACACATTTTCAGCGGTGCTTTTCCACTAACAGTAGGTTGCAAAACCATGCAGCAGGATATATTGA-TTCCTGACTGTCAGCTAGTTTAGGTGCTCGGGGAAAACCTAAGTGTGACTTCTGGCAAAAAGAGCACGTTAGACAGTGGAGAGGACCTCGCAGATGGGTGAGTTGCAGAACCAAATGATGTAGCTGTGCAGAGCCCATCAGTCCTCTACCACTTGACCTTGAAAAGTACAAGGAAT

a score=13690
s chr3           155032841 652 + 160039680 TTAATTATGATATCAATTTATGAGCATAAATGCTTAAT--TAACACAAGGGCCTATTATTAA-CACTGTTTTCAAAAGTCATCATTA-CTGGAAATTTTGGTTAAGAATTTCTTCCCCCAAATGGGATTTT----------------TTTTCCTTCTTCTTTAAGGAATCTTTTATTACTTTCTTGACAAATTCCCATTTGGGAAAAATGCAATCCTTAGTCAAG-----TCATTTGTACAAATA---GAAAGACAACTTGGA--TTAAAAAATCAATTTAAGTTAATGAATCTTTTAATCTCTCCTCTAAATCATTGGTTCTTAATTC----TCATTTTGGGATTGTGCTGTGCTTTTGGTTGTCAAAACTGGTAATGAGGGCCGTGACTAGGTCCGTATTCAGAAAGGAAGATGGGACTGCCCCGGAATGCTGGACCATGCACAGAATAGAGCTTCACCACAGGCCTAGTTA-------ATCCACAGTGCCAGTGGAGTTAATG-----------------------CTAAATAGTTCCAGTCCGTGGGGCACTTGCTCTCGGGTCTGTA-TCCAGGATGATGAAACAAAAC--TCTCAAGCTGTTAATCAACTGTATATGCTGAGGAGGCAGAAAGGATTGGGCTGGGGAATGTAGCAGTCACCAAACTCACGACCTACAGAGGAAG----------CCCCCAGAGCTCACGACCCA--CAGAGGAAG
s HiC_scaffold_1 142043778 715 + 233722169 ttAAGGATTGTTCTAATTTGTGAGCATAAATATTTTGTACTTTCTTAGAGACACAGTATTaaacactattt--aaaaattaccatGAACTAAAGAAGATAGTTAAGTATG-----CACAAAATGAGATTTTCgttttagaagttttatttttcttcttcttcaaaaGACATT--ACTACTCTCTTCATAAATTCTCATTTGGGAAATATGCAGCTTTTaatcaagaaattttatttgtacaaatatttaaaaagcaactcggacttttaaaaatcagtttaagTTAATGACTCTTTTAATCTCTCCTCTAAATCAATGGTTCTCAACCAAAGGTGATTTTACTTCTCAGATCTAGTTCTGGTTATTGTAATTGGGAATAAGGGTACTGTCTACTGCTACTTACAGAAAAGAGCACAGAGCTGTTGGTAAACAGTTTATAACACATAAAATGGTCACCCACGACAACAGTAAACATCATCCCACCCAAAATCCCAGTAGTGGCAAGGTTGAAGAACTTTGGGAAAAATAACCAAGCAGTTTGAAGCTGGGAAACACTTGCTCTAGATCTTGGATTTTAAGATGGCTGAAAAAAATTGTCTCAACTTTTCAatcaaatatatttgtaaaaaatgaaaaaagaaatcag--aaagaataCAATGATAGGCAGA-----GCTCTATAGAGAAAGAACTAGAGAACTCTTAGAGCTAGAGAGCCAGCCAGATAAAG

a score=6848
s chr3           155037371 234 + 160039680 AATGAAAAGATCAGACCTTGTAAACAGCCAAGTGCAGAGCTGGAAACCCATTTCTTGTCAGTCTGGATGGACGGAGCCCTTTTAACATAAGGGCACGGATATGCGACTTGTTGCCT-AGAAAGCAATATGAAGACTGATTGGTTGTTGTAGGGGTTATCTAAAGTATTTCATTATCTTCCTCTGACTTAAGGATAAATGCCATTCAGACTTGTGAAAATGTCTGCCCACTACTCA
s HiC_scaffold_1 142050632 225 + 233722169 AATGGCAGCCTCACACCTTGTAAACTGCTAGGTGCAAGGCCATAAATCTGTCCCTAGTCAGTGGAAAGGAGCAGAGTCCTTCTAACATAAGGGTTCAAATATGTGACTTCTtgtttaagagagaaaaataaaggctaA------ACTCTGGAAGTGAACTAAGCAATTGTAGCATCtg----tgacttaaaaataaatactgaacagATGTATATAACTGTTAGGCTGTTGTTCA

a score=33911
s chr3           155037771 1877 + 160039680 TCCACAAAGCTTTGCTCAGCTTGATCAGTGAATAAATACCAACTTCCCATTTGACAATTCATTAACTTTATTGGGCTGCTTCTGTATGCTGGGAGCTGTCATAAGTT---GGGATCCCTTTGAAA-TCAAATGAAGTACAAGCAGAATGAAATTCTTGTTCACTTTGAGCAATCTTCCTTGTCAGATTCTATGTTTAACATTTTTTTCTCATTATATACACTTGTTTCTTAGAGGTAATCGACTGTCTGATCACAT--CAGGGAGTGCTCTCAAGATTCTTCCATTAAACTCAATTCCCAACT------CACTGTATTAAAAAGCACTTGTTGATATCCAAGCTAACTGAGTTACTTGGTTTagaaaagaaaatagagccgggcatagtggtgcacacctttagtcccagcactcgggaggcagaggcaggtggatttctgagtttgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaggaaaaaaaaaagaaagaaaataaaataaatagaaaTTCAGAGATACAGAGCAAGGATTGACCGGGGTCCTGTGAGCAGGCTCTTAGGAGCAAACCTAAGAGAAGTTGAGTCTGATAGGGTCTTCCTTCTGGCCACCAACGTCTCATGTCCCTACCTCATAGGCACAACTCTGGCTTGAACAG------GGTCCAGGCACTTACCACCGCAGGCACAGCAGAGGTGCAGTAGGGACAGGCCACGCTCTGTGCGGTAATTTAAACTGACTTCACTGAAGGCTTCGTCAGAGCTGAAAAAGCACGGGGCAGATGATCA-GAAATTCACCTCTTAGTGTGTTGCCTTTGTTTGAGA------AGCAGTTGTTGTT-CTATAAATTCAGAACTTCATTTTGCTA---------TGTATCTTTGCTCCTGGAAGAAGCATTTTTGAATCCTCCATATGGAGAAGTAAAAAATTGGTG--AAGATAATATTAATAGTGGAA-AGACTCAAGTTACAGTAAAGATTCGAACATACACTGT-----------TTTTCaatataattaaataaatatataatCTAGGTTTTTCCTCAAACCCCTTATAA--AGAAAGTATAAATAACTAAAAGTCAAATTATTTTAATTCACATTCAAACATTT---GTATTATATTCACGGACAAATTATGATATTCACAAaaggaagaaaagagggagggaggggaggaaggagggaagTTGGGAGGTACAGGGAAAGGGGGCATTGTGTTGCATTTGATAAGAGGGTGGAGAAAGGAATGTAACCCAAATGTGTAACAATTCCTGCCTGAGGCCAGGATTCCTTGCACTCTGGCTGGGTCAGCTGCCTCAGATCA-------CCAAA-----------------GATATGGCTGCTGGTGAGCAGAGAAATGGTGGCATTAATGAATGTCTTGCTTTTGTTCTAGCAAAG-CCTTTGCCCACAAGAGGGCCCT-GGGAGCCACAGGCAGCCTTTCAACAGGAAGTTAGAGCTAAAGTTTTTGACCTCTTCAGGTCCTTGGCACTCCCAGGACATTATTCAGGAGAAAGGGGATCATGTCCTTGGCCTC-CAGGTCAGCTTCAAGGGGCCTCCAGCCTATTCTAATCT-CAGCAGCCCTGGAGGGAC-GCTTGGTCTCTGGTGTGGGGTGCAAGGGATTTCTTTCTCCTTTAAAGTACTTACACTTGAAAGGCTCAGTAAACTCTGGCCATTTGCATCAAGGCTTCCAGTTAAGATCTTCAAAGGCTATTGGAATTTTGAAATAGAAAA--------AGTTCTATTCTCCAGGGTGCTGCTAAAAAGAGCAGGCCTCTAAATCCAGGGGCCTTGAGAGGCCCCAA-GAAAGGCTTTAATTAGCAACTCTAAGCCTTGTGGTCTGTTTCCATAGACATAGGGATATTCTTCCCCTG
s HiC_scaffold_1 142051267 1750 + 233722169 TTCAAAGAATTTAGTTCGAATTAACAA---AATAAGTGCTTAATATTTATTTGTCAGTCCAATACAGTCATTGAGGAGCTATTAAGTCCCACACATTGTAGTAGATGCAAAggatacataaaaaaataaaataagaaggaaGCCAAAATTAACTCTTGT-CATTCTGACCAATGTTCACTTTTAGGTTTTTTCTTTGGCATTTGTCACTTTTCATATACTCCTGCTGCCTATTGTTTAGCAACTACTTAAAGACATTTCAGAGGATTCTTTAAGGGCTTCTTGATTTAACCTATTACCTGACTGGCAAATCCAATTCTGAAAAGTGGTTATTGATTTTCAAACAAACTAAAT-ACTGAGTTTAAAATAG-----------GAGCACAGTGAAAC----------------CAATTCAGAGCTATAAGGATGGGAATATATGC-CTGGAAATTA--CTGCTCCA----GTGAGGTTTA------CTAGGGTTG---------------------------GAGGAGGAAAGACAAATTGAAAAATGAGTC--TATTAACTCA----------------ACTCACTGATCACATGTGTATA----CATATGCACATAATTA---------------------------------TCCATAAACA---CATG---------CATATGCAT--cttcaattttaaaagtataaagttTCAATTACTGCCTTCTGCAAAGGCAACATAAATGCAGTAGAGGAAGTCCACTTTCAGTGAGGTAATTTAAGTTGACTTTACTGAGGGTTTCATCAGAGCTGTGAAAATATGTTACAGATGATCATAAAATCTGTATATTagcatatt---ttcatttgaaattatttaagaGATTTGGTTactataaaatcataaaaatatttttgtagaattcGGCTGTACCT-------------AAAGAGTTTTGAAACCCCTGCCTTTAcaattaaaa---tggagaaaaaatgatGTTAAAAGTTCAAGAGAGTGAGTTTTCATATGCagtttctgtttcctctgtgtaATTTGAACTTTGCAGGGTAACTTggtgaataaaaattata-------------------tataattaggaaacacagatatataaaaataGGTTCATTt---gtctcattaaaattttttgcattttatatgtgaaaacaaat-------ttca-------aataagagagggagaga------aaaagagaga-------------aagaaagaataacacTTTG-TGTGTTTGAAAAGAGATTGTAGAAAGGCATATAACCCAGATGTATTACAACTTCTGCCTGGAGCAAAGTTTTCTTGTACTCTGACTAGGTCAGATTTCATAGCTAAAGAAGGTCTAAACTCTGGAAAGGTACTGTGATACAGTCCCAGGTGAGAAGAGGAGAGATTGAATTAatgaattctttgcctttgtctgaACAAAGAACATTGCCC-CAGGAGGGCCCTAGAGAGCTACaggtagctttttaaaaagaatgttcaGCTAACACTCTCAACCTCTTCAGGTTCTTGGTACTCCCAGGGTGTTTTTCAGTAGAAATGAGATCATATCCTTGGCCTCTCAGGTCAATTTCAAGCTGCCTCCTACCTATTTAGATCTCCAGCAGCTTTAGAGAGATAGCATGGTCTTTGGTG-AGTGTGCCAAGGACTCATATCATTTGTAAAGTACTGACACTTGAAAGGTACTATAAATTCAGAACATTATCATCAAGGCACCCCGTCAAGAACATCAAAAGCTATTggaatttgaaaatagaaaaggaaaaagagggctATTCTCCAGAGCGCAGCTAACAAGAGAAATTCTTTAAATCTGGAGACATTGAAAGACCtcagtaaaaatttttaattagcaATTGGAAGTTCAGTggt-tatttttatacatatgGGAATATTTCTCCTGTG

a score=39731
s chr3           155053771 3034 + 160039680 agacaGTTGGAAAGCTTGTTGCATTGAAACATACCTAGTTTCTCAGCATCAGATTCAAATTCTCTAGGAGGTTTTTGGTACAAATTGGGTTCCTGCCCCTCTTGTCTAAACATTG---TGTGCCTTACAGGGTTGTGATGCTGTCCCAGTCCAGGAtgtttttgttgttgttttgttattgttgttgttCTTTGTATAATAAAGCAGAAGCGGATATCACACATATTACAAAAATGAGGGTAAAATAATTTTCTGTCCCACTGTAAGACAGCCTTCAATG-TATACAGAGCAAGGGAATTATATTCAGGCCCTGAGCAAAGGAATTATACTCAGCCTTCCTGGAGAAGGCCTCCAATATC----TACAGGGGGTTGGTAAAACTTCTCTTATTCCTCAAGGA---GACTCAGGTCTAGCATC----AGCAAAC-------CTGGCAAATAAGCAATACTGTTTGTTAGTGGCACGGAATAAATAATTTAGTGATTAATTCCAGAGTAGGTTACTTGGAATAGTGACAGCTTGTGCCCAATTGCCTATTCTCCAAGCTCTTCTC--------------CCTCAACTTTTGTGAGGACAGAATTTAGGTTATA-GTTTAGTGAGGGAGGTGTGATCTTTCCATTTTGGGAG--------------CCACATGAATTCTTATGAACAGATAACTTGGCACTCTAAAGTTTAGTCTG------GTTATACCCAAGACTTA---GCCTATTTATTGCTAAGGCTTTATGCTTGCACGCACAT-----CATACCTAAAAACAAAAT----ATGGAG-ACATGTATTTTAAAAAGTAAAAACTCTGA--CTTTACCCAAAGATGTGTCTTAGTTCTTGAAATTCATTTTCTTTGATCTGCAGGTCATCTTCCAGCCTTTCTATTATAATAGCATAAGATTCACTAACTTTCTTCTTCCATTCATCTGGAAAAGAAAAACAAATAGGATTGATTCATAATTGCATTTTGCAAAATGTAGACAGAGATCATAGCATACAAGTAATCAAAACCCTGTTTTTTATTCTCAATTCTACAATACTTAATTTAAATGACTGATTGTGGGTTTAA--TGCAGATGTTTATGTTTGTAATGCAATCACTTTGGGATTGTAGTAATTAAGAACCCATTTGATATTGTACAATATATTTACATAAAAGAGTATATTTGACTTATCTTA-TTGATTTTATTGCATTTTAATTGCAGCAATCTC--ATTGCTAGACAGTATCTTTTGCTTTTAAATACTAGATACTTAAGATATAATTCTAAAAT----TTCTATACTCA-ATAGT-TCTTCAAACTTTCTATCATATTATACGAAAGGACTAAACCAATATTTTTTAACAAGAAGTTCTCTGTTTTCCTTTAGAACTGTTTCAGGGAAAAGGAGTAAGTTCAAATAA---ACTCAACACT------TAATATTCT--CTGCATTCAGATCGGCACACATCTCAGTGATTTGAAACACATCCACTCTTAGGAGTGAGTTGTGTTGCATGTAAGAAAGCGAGAAATGTTAGCAGAACATGGTGGAAATCAGAAGGCTTACCAGAACAAGTCTGTGTCGGTCTGGATTTGTAATTCCCCATT--TTAAAGAAGTCTGCTTTCCTCCTGTGCTGCCCTTCACGATATAAGATTCCAAGTTCTAGCGCTGAAACAGACCAGTTGAAAA-TATGTTGATAGTCTTTCTAAAAATAAGCCAAGTGCTGAATGGAATGTCATGCAAGGACGTCAGAGAGCAAGGCAGAGTGTGCCTTCAAAGGTGAGCTGATCGTGTAGTG----GCTGGGTTTGTTTTAAGGGAGCTGTGTGAAAGGTAAACAGCAAGCATTTCAGTTGTGCTATTGGCTTCCATCAGTGGATTGCTTGTTCATCCACACATGCCCTCTGGGTAGGCCAGTTCCTCAATGAGTGAACATGGAAAGTGACT-GGTG-ATTCTGAGCTCCACTGAAAGAGACTCCAGCCAGCC--AGCCAGTGTTTGGCATCTT----------------------TGGCACCGGTGAAACAGTG----------GAAGTTGTCCATGTGAAGA---AACAGAAATTCCTATCAATCAGCACTGGGTTGAGACCTGCATGTGTATCTGCAGGGAC-----TAGGGTTcacacacacacacacacacacacacacacacacacacacacacacacacacacacCATGA-----CCATTGCAGTTGATTATTCCT-ACCTAA--GTCACAGACAAGAA-AAAAGACATAGTGCTTTATAAATACCAAT-----------TTATCATAAGAACAACAGT-----GATCAGAA-----------------------------------------AAACATTTCAACATTGCTTTCTTACACATTTC--------TGGGCAATA-------AGCAGAATTATGAATTTTTTTATGTCAGTTCCAAACAGGGAGTGGAGCCCAAAGTTGATCCT-GAACCATTCGACACTGACGTCTAAGACTGCCGTTATTTCTGATGTGCTGTG---TCCTGAGTTATTCCACACACCTTCCATTTACTTCACACTGTTGCTTTTTTTCCACGCACATTT----------GCACTGAAATAAATGAACCCAGTGTGGGATGGAAAAAAAATGGAAATAACATAGGAAACTTATTGGTTATTTTCTATATATTTCTTCTAGGTGATCTTACTGTGTATGAGAGC-TGTAAATTCCAATCTTGAAAGTCACACTTA----------GCTTTAACGTAGGAGGTGTTGGATTCACATTTACTATGATCAAATATTCAAATGGCTCTTCTTAA---ACAAATGCTTAGATGAGTTAAGGAATCCTCATGCCCTG-----CCTTAGCAAGCTAAAGGAAAGGTCCCCAGGGAAGGGCTGCCCTACTGATAAAATAAGTCGAACTCAGTACCTGGCTTTGTACTTGTGTCTACTCTTGGTGGTTTGGACTCTCTTCT-TGTCATTA-------AGGCCTGTCAGGGATAT--GTAG----------AGTTTATATAG-TGCAGGGTCCTCTGGTCACTTTGATCTGTAGTTCTTCAGTTTTC-TCCTTTGAAAGCTAGACACTGTTGATTTTGCCAGCTAGTTCCCAGTACTGTGTGACCCCCATGCAGCTTGTTCTAAGCATGGTGAAACCCCAATTCTCTCTGTTTTGAGAGC--CTAGCTTCCCTCAGACAAGCTGTTCTCTGATTCACCAGCCCAGGAAACTGACTTCATTAGTATTTCTC
s HiC_scaffold_1 142068656 2998 + 233722169 AGGCAGCAAGCTAGCTAGCTACACCAAAGCACACCTCCTTTCTCAAGGTCAGATTCAATTTATCCCTAAGGCTCTTTGTGTACATAAAGGTATGGTCCCTCTTttccaaacatttatttttgtcttccaaGGTTGTGTCGCGCTCccag-----------------attatttt-ttaatctcattaT------------------------------------------------GGAGTAAAA-----------CCCACTGGACGCCTGAAGCTAATGCTACATGTGGCTATTTGATGAT--TCAGGTAC--------AGGATGACATTCA--TTTCCTCAG------TTGCAATATAAAGAGACTGAGGGTTGGTTAAACTTGTCTTA------AAGCAATGGTCCGAAGGACAGCACCCCCCAGTACACTGCCCTACGTGAGGAGAAGTTTTGGTGCCTGTTGCTGGCACAAGTTATAAGAATTATC---TCATTCCAGAGAAAATTATTCAGATCAGCAATAGTTT------------CCATTTT--AAGGCTGTcttaaatttaaaagagattttaacCTTCATGGTGAGAGAATGCAG-TCATATGTTTAG--------GTGTAATGTTTGTATATAAGGAAGTGAGACATGTTTACTATAGGCATGGTCAAGGAGAGAAAACCTGACATTCTGAAGCTTAGAATGTGGCTCACTGTATGTAAGGATTTTATGTACATACATtctcacacatatacacacacattcacatatgGACACGTCTAGACACAAGATGAGTATGAAGGATAGCTATGTGAATAAGTAATAAATATGAAACCTTACCCAAA--TATGTCTTAGTTCTCTGAATACTTTTTCTCTGATTCTCACATCA----CAAATTTTTCCACTGTAATAACTT-----TGagtcactttctttttctacttaactagaaaaccaaaacagat--tattgatt------tgcattttacaaaa------caaaattcagaacACACAAGTAATCAAAACTCtgctttttattcttgattttacaATACTTTATTTGAATTACTGATTGAGAGTCTAAAATGCAGATGCTTgtattaa-aatgaaatcatattca-ATTGCAGTAATTAAGAATCTATTTGATATTGGATAATATATTTACATAGAAGTATACa-ttggcttatttcattttattttattgcattttaattatAGCATTCTCTAGTTGCTAGATAGGG--TTCAGGCATTAAATATTAGATACTTAAGACATGATACTgagatattatattattttaatgtagtattataaaattttct---aCAGCATATCAAtatactaaaataatattttt---------gttct---gatttctATAAAGATCTTTCAGAGAAAAGG----AGCTCAGATAATGTTCCCAATACTTTCATATGACATCCTACACACATACAAATTAACACATATTCCAATtggttattttttatatattactaTAATCAAACAATATTACAGTTAAAGTAG------------------------------TAAAGGTATTACTAGTACAAGTTTGGGTT-GTCTAGATTTATAATTTCCCATTTGTTAGAAATTTTTCCTGTTCTTCAGAGCAGTTCTTCAGGTTACCAGATTTCATGTTCAAGCTCAGTGACAGTCCAACAGAAAACTACTTTCATAATCTGGCTAAAAATAAGCCAACTGGCAAAAGTAATGTCATGCAAcagcaataaagaacaaaacagtgttTGCTTTCAAGGGTGA---AATCATAAAAAGAACTAATCAATCTGTTTTAA-AAAGCTGTGTGAA--------AATAAATGTCTCAATACAATTATTTGCTTTCATCAGTTGATTACTTACCCAT--ACATATGTCC-----ATGGGTGATTTATTTAACATAGTATTCTAGAAATTGATTCAGTGAAATCTGCAATTCACTAAAAAGATATTGAagcatcttaaatcttttttcagGATCCTATTCCTTTTTCAGGCAAAATAATGGCAGTTGGAAAATGGTGATTGGTGATAGAAtttgtctataaaaataaataacagaaatgtatAT-------------GCTAAGGCTTGTA-----ACTAGTAGACACAAATGTAGATTTTGCCTACAAAATTAAATTTGTAGGAAGACATTCTCA-----------ACATAGATCATGATTAGTTTATTATGGTTGATTATTCTGAACCTAAGGGTCATATATAAGAATATAAGACACTGAGTTTTATAACTAACAAtgcacaaaataataacaataaaattaatagtaaaaGGATTAGAAATTTGCCAAATGCTTGATAGTAGTTTAAGAACTAGCACCTTATACATTTTGTTACTGTTACTTTATACATACCACATAAAGTAGACATTATTCCTATAGTACAACTGAGAAAATCCAGAGGT-AGT----AATAGGCAGTGGAATCTGAAATCAGTTCTGGGGCTATCTGAATCTAGCATTGAAGCTCTACATTGTTATTGATGTGTTTCACATTCCTCTTTTATT-----CACCTTTCATTTA-TTCA---TGGGacatttcttttgtgtgtatttatctATCTAGGGATATAGATACATACCTTCAAAGTATGATGCAGAATATATTAATCCCAGGAAGGAAA-TCATCTGT---------CATATTTTTCCTAGATAATCTAATAACAC-TGAGAGAGTACAAATATCAACCCTTAACATTCACCTCAACAGGATAGGGTTTTATTTTAACAGGTATAGATTTTATATTTACTACAGCTGAATGTT---ACAACTCTGTTTTAGGTGCAAATGCTTAGACAAATTGATGATCCCTCA---CCTAATTGTTTTCAGCAAAAGTGATCTAAGTTCTTAAGGAATAGATTTCTACTCtgaaacaatacaaaaaacaGA-TATTCGGGTTCCTAGACAGCTCTGTCCCTGCCTGCTTTAACCTCCTCCTCTGTCCTTACTAGGACATGGCTGCCGCAGTTAGCAGTAGCCAGCAAAGCAGTATGCTTTGCTGAAGAAGCATTTGGTCCACTTGGTCTGTAtattattaatttccattttatgaaagccagatcatttctgttttatcaggtatttcttggcactGTATGAC------------------------------ATCCC-ATTCCCTCTATTTGGAAAGTTACTGCATTCCCACA-ATATGCTCTTTTCTGACCCATTAGCTCAGAAATCTAACTTCCTTAATGCTACTC

a score=21683
s chr3           155060310 655 + 160039680 aatctatgatTACTAGCATTTC------CTCTCGAGCTCACTTGTTCTTTCGGTGTAAAA---TTCCACACGGGTTTAGTTAGCGTCTTATTTTCTCAACTCTCCCATTTTGACTGAGCTTCATGTGCTGCTGG---------------CACTCACACCCCGC----CCCCACCTTATTTGTC----------TGCACCGAAGCAGAGCAGCTCTAACACCCCT---ATGAGCCCATTTACATTCTTCCCCAATTCCTTCATTTTGAGTTCATATGATTTATTTATCCTGATCTCCTCTTATGCATCTGCTATTTATATTTTATACTGCTTTCTTCATACATATTTAAAAGGATGCTTTCAAGATGAAATGACAAATATTAACCTTGGCACTTCTTTTACCTTTATCGTTTCAATAGAGAAATTATAAA-AACATGTATTCTATGAAA-CAAATCTGGTGTAACTGGAACACTTTTTCCATAACATTTA-AAATATGAGTTAATTTAGAGTTAAAAACCTAGATCATTCTTTCTTGTGGTAGCGCTTATTAATCTATTTC-CAGTGTCAGAGAGGCCCAGGTGTTTG-ATGTGTTCATTTGGTT-----GCAGGTAAGACAACAGTTGCGTCAAAGATAAG---AAACAAGAACTTCTAATAGTTTATAGTGACTTTTCTTTCTCTTTATTTTGTATAAGCATAAagat
s HiC_scaffold_1 142073595 689 + 233722169 AATATATGATTAAtagtattttatgtttctttcacacttgttttttttttccattcaaaaaatgTCAGGGTGGACTTTGTAAATGCCTTATTTCTTCATAATTCCT-TATTGACTAAGCTTCAGGTTCTATTGAATTGCCAGAATCCAACATTAAATGCCTTCATCTTCCCAACTGATTTATCAGGGCATTTCTGCACAGAAATAAATTTGGTCTAACACTCCTTCAATGTGCCTATTTACATTCTTTCTGAATTGCTTTATTTTGAGATCATATGATTTATTTATCCCAATCTGCCCTTATGCATCTGCTATTCATATTTTATACTGgtttcttaataaatatttaaaagaatgctTTCAAGACAAAAAGATAAACTTTAACTTTGGCACCTCTTATACCTTTATGGCTgcaataaagaaattataaagaacatgTATTTGATGAAATCAGATCT-ATAAGCCAGGAATAATTCTT--ATCACATATAGAAGTATGAGTTCATTCATAGTT-AAAATCTAGGTTATTTTACTGTATGATTA---TTATTAATGCCTTTCAAAGTATTAGAAAAGCCTAGACTTTTACACATCTCCATCTGTTTaacaaacaacaatgaaaatCATTGCTTTAGACATAAAGATAAACAAGAATTACTAAT---------Tggtttatatttcact---ttttaaataagtattaaaat

a score=8963
s chr3           155062550 606 + 160039680 TTTCACAATAATATGAATTTCACAACTTCCTCCTCT----------------TAAGTCTTCCTTTTCCCTTCCTAAAATTTCACTTGCTAAGAACATA--GTAACTACAATACAATAACTGACTAACACTGTTT--TGGGCAATTA---TTTCCATGCCTGTAGTTCCTC--TCTTAGAACAAACAAACAAA------------AGATAGAAACAAAGTAAATTAATTCTACTTTGAATTCATTTTTTCAGTCACCAATTATCCATCCAAGGCTGTGCCTCAAAGCTCAAA-GAAAACTAAGAAGATTCGGGAACAACAAATCATTTCAAGGCTCAGAAAGATTCTCCACATAACATG--GTTGCTGAGAA-ATCTGTGGAAATGTAGCTAATATGCTATGTACTGCATAGATCATTTATATGAGCA--TTTTGGAAGGCTTGCAGGGGTC--TGATTTAATAACTTGCCCCATGTTCTTTCAAACATGAGACACCAGTGTTAGGGAGAATCATAGGCTGATAGATCTGCTGAAGTGTCCTATGTCCTCAAAAGTTCAGG--GTAAGTCACCTGTGGCAGTTCTAGGATTGTGGGAATCCCAT--ACCTACCTTTTCGTATGTTCCCAGCCC-----------TGAGACAGGAGAGCATCATGAAA
s HiC_scaffold_1 142075058 619 + 233722169 TTTCA-GATAAAATAAACTTCACCACTTAGACCGCTCTCATTCCTtactattttagttttctttttcctttcctaag---------gGTGACAATGTGCCATAATTACAGTTCAATTAATTGCTAATTATTTTTCCTGGGAAAATAACATCCACATCCCTGGAGTTCCTCATTCctaaaacaaacaagtaaacaaataggtggtggagagaaaaaaagtaa-ttagtCTTACTGT--ACTTAGTTTT---------AGTTATTGATTCACTGTGGTCCCTCAAAGTAAAGATAAAAACTAATTTACTGTGAGAG--ACAAATTATTTCAAGTTTCAGAAAGTGGGATTATATAATATGTGGCTGTCTTGAGTATTCATAGATATGTGGCTTTTATCC------------GGCTAATTTTGATGAGTAGATTTTGGGGGGACC-CAGTGCTTGTTGATTCGGTGACTATTTCCCTATTGCCCAATGAGGCAGTCTCTCGTGCTAGAGAAAACCACAAGCTACTGGATCTGCTCAAGTGTCCTATTTCCCCAAACCACTGGGAAGTCAATTACCT-----AACTTCAGGA-----GAAATCCCACcagctggtcttttttttttttccccacgcGCTGAATATTAGGAAACAGAAGAGCTTTATCAAA

a score=24630
s chr3           155069835 880 + 160039680 TTCATCAATATTAGAATCTTTGTACTTAGAATAAACCGAAT-----TAAGAATAAACAAAGTTTCCAAGAAGGTGCTTTGTGCAGTTTGCCCATAAGAGATGTAAGGCACAGTCATGGCC--AGCAGAGCTTCAGCAGAACATAGTGTGGCTGAGCATCTAACTTCCTCTGGAGTCGTTAGTGATGGCTTGTGAGAAAAATGTGCATGCTGTGCAG---TTTAAAGAGGGGAGGAGTTAAGCTGGGCTGGTGATAGAAGCAGAAT------CACAG---------AAATATGTCTTGTTGCTTCTGAAGTTTTAAATAATCTTAGAGGAAAAATAATTTAAAAAAAACCTATTTAATCTTCAACATATGATAAATCGAGAGCTTGGACACTATTTAGATCATTATATCACTTCAGAGGATTCAGAGAAATTATTAAGACGATGTTCATTAAAATCTCCATTATTGCTCTACACAGTAAAACAAATTAAACTAAACTGAGGGGACCAAGGCAATTTAAATTTCATCTTGGATTTTTTTTTTTTCTTGAGAGTAAAAATTGATGAGGCTACGTTAGGCGAAGTCATAAATACCAAATGACAGAGGAATTATACATGAAGTGGCAGCAATGGGGTGAAATACGAACATAAAAGGTAATAAGTTTTAAGAGGAGAAACCATGAAG--CCAAGACATCCCAGAAGAGCCAA-AAAGATTGTGGCTATGGGGGGA-GAAGGACTGGGAGGGCAGAAGCCAGTTTCTGATGAATAGGTGGGACATGTAAATTACATGTAAATTCCTGGTACATTGAGGAAGATGAGTGGTTTTTAAAGAGAGGCATCATAATTTTGAAAGGAGAAAATGTAATTAAGTGTTTTCTTACT-TAAATCTGTTAGGATTATTTTTGAGGT
s HiC_scaffold_1 142076259 825 + 233722169 TCCATCGTTCAGAGAATCTT-GCATTTGGAATAAGCAGAACAAATCTAAAAACCAACAAGATTTGGA-------------TACAGGTTGTGCATACTAGAAATATATCGAGTCCATACCTGTAACCTAATTTCAGAATCTCATTCTCTGTCGTAG--------TTTTTCATGAGT-----GTAATGACTGGTTCCAAAATTGTGc------tacaaaaattaagaaaactaaaGGGTTAAATTGA-------CTACAAGTGAAATTTTGAACATGGTGTGATTTAAAATAGGTTTTTCCActtctgtagttttaaa-aatcttagagAAAAGG---------------------AACCTCTACTATATGATAAATTAATAGCTGGGACATAATTTAGATCATTATGTCACTTCGGAGGATTCAGAGAAATGACAAAGATGATGTTCATTAAAATCTCTATTATTGCTCTACAcagtaaaacaaattaaacaaaactgATGGGACCTGAGTAATTTAAATTTCATCttggaaaaatgttt----ttgagaCTAAAATTTGATGAGGTGAAGTTAGGCAAAGCAATAAATATCTAATGATAGAGAAATTATACATAAAGTGGCAGCAATGGTAGAAAATatgaacaggaaagagaaaatgtttcaaaaagaaaaatagagcagAACCAAGAGAGCTTAGAAAAGCTAAGAAAAACCATAATTACAAGAGGATAAAAGTCCTGTGGAGCAGCA-----CTTCT-AGGAgtgcaaaaaatatgaaaattaaatctcAGTTCTTGGTGCACCAAGGGAAATGAATG--CTTTAAACAGAGGCACCATGctataaagaacacaaaat-----------tttgcTTGTTGCAAGTCCTTTGAGATTACACATGAGAT

a score=10705
s chr3           155082924 1141 + 160039680 atttccctgatgattaaggatgttTGTGGCTATAATTTACTTTTCCAAAACCCAATGCTACAAGCAATAGGAAGAAAACCAGCCGTGTAAAGCTTCACTGAGCTGCATCGCATTCCTCCACCAGCAAATAAAACGAGCAGTTGA-----TTCAACATAGCTGTGATTGAAAA-CAATGCCTCAAGATTTAAAT-CTTTAACTATTTCCTGGGT---------------------AAGAGAATAAATTAAAACTAACCAGAACCACCCAGACATTCTAAAGTGG-----------ATGCTGTTGAGTAATAtctctctctctctctctctctctctctctctctctctctctctctctctctctctcCTGTACATATGCTACTAATTCACAAGATATTCCTTGCAGTGAAGATTCTGAAAGCTTTGAAGAAGTTTGGAGATTCAAAAGGCAGATTAGGAACACAGATTCTAAAAGTACAGAAGAGCACAGGCCCTGGGGTGtgttctagtggatgacccaacaccacatacacaggagcagcacaaactggaactcatggcttattttaaaacaagaacaaaagcaaaaACAAAACAAAACAAGAAGCCCCCTAAAGACATGACATTAGATTGCCTCAGAACTGCACCAAATCACGGTTGAAGAATAATCACAGGACACATGGCCAAGAACGACATGAAAAGAGCAATTGCAGCAGGCTACTGCAATTGGAAAGGTGCTG-----TGAATG---GCAATATTCGTGTTGAATGACTCAGAGATCATTGCACACGGTGGCTTCCAAACCCTAGACCATCGACTTAAACAG-----CCTAAAGGAAACAG----------------AATTAGCTAC-TACATGTATGATGGTGCCTTTTGACTG-GCATCTTTAGGCATGGGTGTCAG----CATGGCTCAACACA-TGGATAGAGCTAGTTATTCTTCACAAGTATCCTCCTCCTACAGCTATAATTTTGC-AATATC---AATGCAGTGTGGAATCTGCAGATTTTATTATTTCATTCCT-TAAATTCTGCCGTGGCTCAAAATGGTGGTCAGCCAAACTACTGTCAAATTGACCACATACTAAGTTTTGGTTATTTCTTTTTTGCACATGAGGATAAAAGATAACTTTTCCAGGAGCAGAAGTGGTGCTCTCCAATCAGACTGTTGTAACTTGCCTTTTTATTACATAGAA
s HiC_scaffold_1 142086325  992 + 233722169 ACTTCTCTAAAGAACA-GCATATTGGTGGATATAATTTACTTTCTCAAACCCCAAGgcaaaaaataataggaaagaaaCCAATCATGTAAAACTTCATTGAGCACTACAGCATTTCTCAACCTGCAAATGAAATGAACACTTACTTCATTTCAACagaattgtttttaaagattCTTGCCTCAAGATGTAAATgctttaattccttcctgggcaGTGCAACACTCTCCTATGAGAAGGTAGTAAATTAAAAGTAACTTGAACCATATGAATGTTCTATAGGGAGAAAAGAAGGCACACAActgaataaaaaacagaaat-------------------------------------------tcacaTGTGCAGAT--TACTTAGCCACACATTGTTGGTTGTAGAAAAGATTCCTACACCCTTAAAGAAGGCTGGACATTCAAAA----------------------------------------------------------------------------------------------------------------GCTTATC---------------AGTCAAAAACATCATGAAAT----AGTGCCCAAAGAATACAGAGTTCAGATGTTTCAGCAATCAATTGAAGCACAATTGAAGGAT----CCTAGACAGACAGCTGAGCA----ATGATGCTACCAGGTGGAGT---CTGCGGAAGTCAGAAATGAATTGCAGTCTGAACACCTGTAATTTATATCTTGTATGGCTAAGCAATCCCTGCAGCCAGAAGCTTCAAGA----AGAGCAATTATTTGTCCAAGGACCCCAGAAGGGAACATTGACTCTGTTAGTTTCAATCACCTACTTGCTTGGGCAACAATGCCTGGGGGATGAGCATCTTCAGGCAGAAATGCCAACAATCAAGGCTCTTTATAGCAGGTGAGAATAGTTA--CTACATAGGCA-CCTTCTCCTTCACCTCTCATCCTCCAAACATCTCTATTGGATGGAGGAAGTagctatttctattatttctttactccAAATTTTAACCTGACTCAAAACGATCATC------------------TTTTACACACAGCAA-CTTTGGTTCATTGTGTCTCACATA------------GTAACTCTGCAAGGATGAGAA-TGGTACTTTCCAATCATACAGTATTAAC--ACAACTTCATTAAGTAGAA

a score=109739
s chr3           155086429 5237 + 160039680 [encoded data, 6135 characters]
s HiC_scaffold_1 142090553 5828 + 233722169 [encoded data, 6135 characters]

a score=17841
s chr3           155098685 284 + 160039680 AAATCTCCATCTTTTCTAGATGTTTCATGGAACAATCACAAAAGAGCTTACCAGCCATGAGGAATGGAGTCACTATAATGAAAATATAATAGAAGATCAGAAAGATTTTGTATTTGTGAAGTATAGTGGCCTTCATCTGAAGTCCATGGAGAACCTGCAGACCTGCATCTCTCTGAGAGTGTGCATCTTCTCTAACAACTTCCTTACTGACATTCAGCCACTGCAGAGCTGCAAAAAGCTCATCAAACTTGATCTCCATGGAAACCAGGTAAGCATTAACTACT
s HiC_scaffold_1 142102565 284 + 233722169 aaATATCCATTGATTCTAGATGTTTCATGGAACAATCGTAGAAGAACTAATCAGTCATGAAGAATGGAGCcactataatgaaaatataatcgAAGATcagaaagattttgtttttataaagttCAATGGCCTTCACTTAAAATCTATGGAAAATTTACAATCTTGCATCTCTCTTAAAGTATGCATTTTCTCAAACAATTTTATTACAGATATACATCCACTTCAAAATTGTATAAAGTTAATCAAACTTGATCTCCATGGAAATCAGGTAAGCAATAGTCATT

a score=21481
s chr3           155100624 777 + 160039680 ATTTTACATCTTAAGTGTACAGTCTACATGAATAATAAGTCAGAGTTCTTAAACTTTATGTGAGGCGCCTC--------ATTTG--GAATTGTCCTAATT----GTACACTGAA-------AGATCTCTATCTACACACACTCGTGAGTGCATCTGTACATCTATTACACTACTA-GTTGTAGTTTGTTCCTATTCCATCATGTGTT---------TGCAGTCATCTTTTGGAGGTTTGGAAATTCTGGTTTTGGTTACTTACTAGGCACACATAATTTACAAAACACTGGATTTTAGATTATATTAAATGTTTTACCACTTT---TTTCTATGGAGTTT---------------TAATGAACGATGCATATTTTAAATATTGTTTCAGATAAAGACTCTTCCAGATAAAAATTTTTGGAGTGGACTCAAGAACCTAAAACTCCTCTATCTTCATGACAATGGATTTTCCAAACTGAAGAACATCTGTGTATTGTCTGGTTGTGTAAGCCTCATAGGGCTGACCATGTTTGACTGCCCAGTGAGCCTGAAGAAAGGCTACAGACATGTTCTTGTCAACAGTATCTGGCCTCTAAAAGCTCTGGACCATCACGTGATATCCGATGAAGAAATCATTCAGAACTGGCGTCTTCCAGAGAGGTTTAAGACGTTCAGCCCCAGTCTATTCTTTAACCTTTACCCAGCATTGATAAAGGTAACCCACTCAACGGTGCTTCCTTCAAAATCAGTTCAGAGACATAAAAGTTTGGC-TCACAATTCTATATTTAAA-TATATGATCTGTTTAATAATTTTGCTCTGTATCTTTTA
s HiC_scaffold_1 142103063 812 + 233722169 ATTTTACTTCTTAAATCTACAGGctgcataaa-aatatttcttgatgCATTG--TTCATTTCAGGAATATATTAGAGAGATTTGAAGAGTCAGCCTGTTTCCAAGGAAATTGAactagattatatatatatatatatatatatatatatacacacacactttaaTCACA--AGTATGTGATAGCTGATTCCAAATGCCCAATGTATTATGTTGTTTTGTCGTGATCGTTTAGATAATTGAAAGAATTCTTTTCAAT-----AATAAAGTCTTGCCATTTGGAAGAAatcaaatttta---catatttaatgctTGAC-ACTTTATATTTACAtgtaatttgtagaaaaataatactggtgaacta-aaataattttaataatatttcagataaagaatttaccagatacctatttttggagtggattaaaaaatctaaaactacttTATCTTCATGACAATGGATTTGTAAAGCTGAAGAATTTATGTGCATTATCTGCCTGTCCAACACTCATTGCGCTCACTATGTTTGACTGTCCAGTAAGCCTTAAAAAGGGATACAGACATGTTCTCGTTAACAGTATATGGACTCTCAAAGCACTGGATCATCACGTGatttctgatgaagaaataattcagaactggcatcttcctgaaagattTAAAGCATGTAGTGACcgatttttctttaacttttgtcCTGCTTTAAAAAAGGTAATTGGCTTTAC-TTAatgcattttaaacaaatttagaaAAGTAAAGTTTTAGCTTCTGAATGCTAaccttaaattatataaattttcataGAGGATAACTCTGCAATTGTTA

a score=18452
s chr3           155114207 586 + 160039680 TATCAAGAATCTTGCATATTGTGCGGaaaattaaaattatttgaaaataacaatgtttatattttaatCAATACTA--AAGTATATTTACTGTTTAACTAGTATGCTGATGAGAGTTTCCTGAATGTCTTATTAATTTA--TTTA-------------GATATCTCTGGGAAATGCTTTAATGAAAGATAAAAATTACTTGATAAAATTTCTTCATACAGGGTACCACCTATGAAGATGAAATAAAGAATATCAAACATATAATTTCAAGAATTAATGAAATTCTGGCTCATAATTCACCAGTGTTGATTATCCAAAGATGGATACGTGGTTTCATAGTTAGGAAACACTTAAGGTATGTTTCCTTATATTT----ACCATTT---GAATGTT-------GAAATGATGTAA-AATACCAAGGATAAGAAGTAAGCTGACTAATAATTTGCACTTTTT-TATCCTGCGTTCTTAatatatatatatatatatatatataCACAATGCATGACTTGATTGTAAGGAAAATACCATATTATGTTACATAATCAGTATTTGATGCTTGTATTTATAGATGCTTGCATTTATAGATGCTTGCATAATCAGAATTTGATGCCTT
s HiC_scaffold_1 142117328 579 + 233722169 TGTTAAGAATCTTGCATTTTGTGTAGAGAACTGAGATTACTTGAGGCTAA------TGATTCTTCATAAAATGCTAtgaaatgtattgatttttaaactattatgCCTATAAGATAcctatgaatattttattaatttcattttattatcaaGTTCATAATaccttttagaaatattttcatgaaacatAAGA--CAttgaacatattttctttatacagGGAAAAACCTatgaagatgaaattaaaaatattcattatattatttCAAGAATTAATGAAATTCTGGCTCATAACTCACCAGTTTTGATCGTTCAAAAATGGATACGTGGTTTCTTAGTTAGAAAACATTTCAggtatgctttatt-tatttagaaaacatttcaggTATGCttcattgaaaaatgaaacaataaaatcagcaataaaaagTCAGTTCTCTGATAATTTACAGTTTTTGTATTCTATATCCTCAAAATG-ATAT-----------TTTACAAGATATTTAAGCTAGTTTTAAAGAACATATCAAAGGA-ATTATA----------GTGATAc--------atagatatgtgtgtgtgtgtgtaacagcaTAATTataatttgatgtttt

a score=23898
s chr3           155136810 1513 + 160039680 TTTGGTAGATAG------TTTTCATATCAAATTCCTTTGCGCCATGATTAGGAATAAGAAATAAGAAATGCGTTATCGGAGCAGT-GATCTGGCTCAGTTTGCCA--CGGTCACCCCCT--------GGAAACATTGCAGGTCAGTGCTTTCTGAAAAGTACCCATT--GAAATGGCATTAATACTTTGTAATATTTCCCCACACTGCTGCTTTTGTTTGGAAAGTGGTATGTAGCCTCTGCATGATGAGTAAGCATATGCATTAAACTATTAAATAA-----AGATGTATCTATTTTCATTACACAGAAA----CCTTCATGAGCAGTACAGCCGGAAGAGAGGG--TTCCAAAGTTTCTTCCT------GACATATCCTTGATCTTTGTTGAAGTGTCAAAATTCACAGTTTTGGTTGCTCTCCCTCGT---GGGAACAATGATGACTAGAATTCACGGGCTCTGGAAAGCAGAGGCACTGGCCACTGACTTCCAGACTGAG-TAGAATGTTTGC----------TAGGTATTGTCGCATCCGATGAGGTTAGCTCTATGTTTGCCATCTTTAAACTTTATCACTGTATTTTTCTTCAGGATAAAACAAAATTATGGGTCAATTTTCACTGAAGTGGGCTGGATGTCTGTACTCACCTTTCATCAATA-CAAAGGAATCACGCACTTCACTCCCTGGACAACAGCAATGAGAACTCGCCTCTGATTGGACGCTAGGGATGTCAGCTGTACATAGAAGATAAGTGTGAGGTGGAAGAGAGAAC-TTCATCTAATAGTACATCTAGGACAAAATATTTTAACAAACTGAATCTTAATTTAAAATTGTCATGACATTA-----CTCTTCATCTAAGAGAGCTAGTGCCACCAGTCCTAATCTGAAGGAAATGTACCATCATAAATATACTACCTT-GAAAAGACAGAAAGTA-AAAACTC---AAGCT-TCCATGCTATTCTAATAAAACAAACAACAAAAATCAATAAAAGGATCATTCCTTACCTAACTTACTTACAACATATTTTTATTGGTTTAAGGTAGAAGGCATTGGCTGTTTCTGTGTGTTGTGCTCTTGGTGAAAAGAAGCCCGTGCCATAGCGTTCCTGTGCCCGACTTGTGACTATGCCTCAGTGTGTTTCCAGGAAGCACATTTGTGGAGTTTATCCTTGGAGAAACTATGCTAATTTTGGGTT-CCCCGCTGCT--TTGTAGGTTATGTAAAGCAGTGTTCAGACT-TGACATTTAAGTGTACGTTTTGTTGAGACTATTTCCCCAAGAAAGCCTGAGAATGTTCCTA---AAACAATACTTTGTTACATTCAGTCTT-TGATTTGTAAAATATACATGTGTAGTAAT---GCTGAC-------------AAACATAAAATAGGGCCATTTGCTTTTTGTAAAAATTGACAACTGaaaattaacttttatataattgaatttattttaattGGTAGTTAAAAGTTTTTGAAA-TACATTTTAATGATG------------TTTCCATTAGTATACCTTATACAGTACTTGAGTCAAGGAAGCTATACCTC----------------TTCTTTATGGAGAAAATATGTGCAGTACATT
s HiC_scaffold_1 142187531 1544 + 233722169 TTTGGTACATAGCATCAATTTTCACATTATGTTCCTTTTTATTACATTTGAAAGTTAGATAT--------TGGTGTTGAAGCAATTGGTATGACTCAGAATGCCAAGTGATTTCCCTCTTATTCTTAGGA-----TACTGATC--TAGTCTTGAAAAAATGCTAGTTTGGATACAACATTGAGATTTTATATAAGGTATACACA------------TTTTGAAATTGGTGCATTTTCCTTACTTGGGAAATAAGTATATTTTTTAC-TTACTAAATAACTGTTGAATATGTGTATCctcatttcatagaaaaaaattgtaGTGGACACTAGagatggaagaaaataatttttaaaatgtctttccttttgagttttaTCTTTCAATCATAGTGAAATGTTAAAATTCACAGTGTACATTTCATTCTACCATTTAGAAAGCAATGAAAATTAGGATACATGGCTACCTAAAAGCAAATAATGAGTTCTGTGTCTGTAAGGCAAAGATGTAAAGTTTGTAGACTATCATTAAGTACTGTTATACCTAAGAAGGGAATTTATAAAAAT-CCAGCTTTAAactttattactgtatttttcttcagGGTAAAACAAAGTTATGGGTCAATTTTCACTGAAGTAGGCTGGATGTATGTGTTCACCTTTCATCAGTGTCAAAAGGAACTGTCACATGCTTCCCTGGACAGCGG-GATGAATGCTTATCTC----TGGACACTAGGGATGTCCGCTGTACACACAAGATAAGTGtaaatttgagaagaaaatacaCACCACGTATTTCATCTAAG----TACATTTTAACACAC--AAACCTGCATTAAAGTGTTCACCAAGCTATTTACTTCTGCACACAATAAATCTCATATCACCATTTTCCAGCTGAATGAAAAATATCATCACAGCAATATTTGCTTGGGAAAAACTGCTAGTGCAAAACTCTGTAAGCTCTCCCCCTCATTCCAATAAAA-AGGtgat-aaaatcaataaaagaacCGTTCTTTACC--ACTTGCTtagaatgaatttttatttgttcaaagGAAAACGTTGAGATAAGCCTTGAGTGTCGAGATTTTGTTT-TATGATTCATGTGTT----CATCACTGTTACAGAATTTTG-CAAAACCAACGT--------AAGCGGCATAGCTGGGAAG------------GAAAATA-GTAACTCTTGAATTGCCCTGCTGCTGCTTCTTGGTTAGG----GTAGTGTTCACAATATTATACCTAACCATG-GTTTTGCTTGTCGTATTTACCTAGGAAGTCTGGAAAGAGTCAGTAGCTAGGAAGAAATTTTTTATATTCAATCCTGTGGTCATCCAAATATGTTCTGATCCTAATTAAGCTGATTTCAGTGGTTTAAGAAGCTGAAATGGACTTGTTTG-TATCTGTAAATTTTGGCAACT--------ACATTTGAATAATCAAGTCCATTTTAACAGatacccaaaatataaaaaaagtacATATTAATGAGGAGCATATGGCTTTTACTACCTGTTTACATTGTGAAATGTATAAGTCAGGTTAATCCTATCTCCTcaaacatttgttatttctttattgtgaaaatattcaaagtcCTTT

a score=30122
s chr3           155170487 1893 + 160039680 GGAATACTGCAA-AATATGAAGTGAGTACCTCCCTCCACACTCCTCTTTCCCTCCACACTCCTCTTGGTACTGTAATTAGGATGTGCTTCGTGTCATTTCATATAGATCATTGAATATACAGAATATACTAGTTAGTTCAGTATATGTGAGACCCAAGTGCCACTGAGTTTTGTTTTAAATAATATGCAAGATGCTTGTTT-------TTGCAA------AGTATTTAGTACTAATGGTTTTCTGCAACTATTTTTCTTACCTTAGATTCataataataatttaataattttaattCTAATGTACTCTAACCAAATAATTTGTTTTTCATTT-TGAAAATGATATGTCATT--ATAAGTAAAATTTGCAGGTAGTATTGTATTTCATTGTGGCTGGTAAACATTTCATATTTCATTCAAATTAGTATT--ATACTGAACATTGCATGTTGTAATCTATTCACAAAGTGTGTTTAATATTAGAAATTAGATGCTAGGGCCATGTCTTGG---TGCTG--AAAGGGCACAGCCATCTGATATTACAGAGGCTGAAGTGTCTGAAATGCCAGCACACGTCAATCCCTCATTAGAGCTGGGGAGGAATGACATTTTTCCTCATTCCCGAGCACTATCTGCTTGTCCTAGGCATCTGCAAAGAAGTCAAA--CTCCAGTAGGAAGCACCAGCTGTTGAATAAATGCTATTTCTGAGAACATTTTCTATTCAGAGTATAAGTTCATTGGGCTAAT----TGGTGGTCATCTTGACAAAGTACCCGTGATTGCAGTAGTCCAGTCTCCTATTATTTTCCTCCATTATATCCTTTGTGTTCTTAACCATCTACTTA-GATTGTGAAATGAAGACTAAGGATTTTTT--------------------TTCCATTTTATGCCCCCATCTTTTTTCCTCCAAATGCATC-----TATCATACCTTCCTAATTTCAGCCTGCTTTCTTTGATATGATTTTAATAGTCTCTCTTCCTT-------------ACTTGTTTGCTTGAATGA-TGA-----CCACTAGGATCTAAAATAATATGAATTAAGCTACTTCAGGTAAA-AAGTAGAG--TGCAGGTACACATAAAAATATTTTTTTTCTTTTCAG---TTTAACACTAAATCAA----ACAATGCTGTGTTTCGATTGTTTTACTTCTATATAATAATTCAAATTTCTT---CATTATTACTTTTACTGGCAACAACAAAGGGGGATAGAATCACATAGAAATCAAATTGGCTATATTTGGAATTATTTTGTAA--CTAAGCAACATTGCC-ACATAGCTCATATTGC----------CAACTTCCTGCAAAGTTAGATGAAAATTATGTGAGCAGTCTCTCCTCTGGACTGTGAGCAGAAGTGGAGCTCATCCCTTCAGAGGGAAAAACAATAATAGGGATTATTCTATTGGTTT-CTTTGTAAGGCTCAGAGGACATGTGTTCCACTTGGATAACTGTGAAGGCCTCCTGACCCATGTGGGTTCTT----ACATATACATCAGCTTCATTGTACTAAGCTATATCAATTTTTGGGTTTGTCTGTGATGGGACATGGGATGAATCATTCTGGTAAATAGAGACATTAGCATCAT-ACACAAA-----------CTCTGAGCTACAGTCACATCTGTAGAGTCAGTTGATATGAATGAGTAAGCTGCTGCCATTGGCTAGAAAGAGGGCGAGC--ATTTGTTTTGAATGTAAAATATTTTCCTGTAAT--------------ACATGAAATGCCAACTATTTTTCAGCTG--------CAAGGAAGAAGTCAGAAAACTAAGTTTGTTTCTTGACTGTA-----------TTGGCCATTCACTCTATGGAGAAAAGACCAGCATAGGAGAGCCTTTGGCTTG-AAGAGTACAGTTTGAGGATGGAGATT-----TCAAGGCCTTATATGCTGGGGAAAGCTATTTCCTATCACTT---AAGTGTTAAAGCATT--GTCTAATAAATCTTCTACACCAAG----------CACAGTTGGAAGTAGTG
s HiC_scaffold_1 142210508 1911 + 233722169 GAATTATTGTAAGAATATGAAATGAAT--CTTCTTTCAC-TTACTTGTAACTTCTA------------------AATAAGGATA-----CATATCATCTTACTGATATTATTGAAT-----------------CAATCACTTATATGCTAT-CTTAGATGCTATTG-TTTTTGTTATAAATAGTATCCTAAATGGTTGTTTGATTAATTtgtaatatagaaatatatagcaataaaa------tacatttgttttctttatgctaGAGCTATTAT--Tacttt--tgatgtttattttacCTTACT-GAAGCAAATAATTTAGTCTTTGTTTATGAAAATGATAGGTAATTTCAGAATAGAGGTTTAAAAGTAATAT---ACTTCATGAAGGGc--------tattctattttat--aaattagtatttaatattagaaattaaacatACAAAT---TTTACAA---GCCCTTAA-------AAATATGTGCTATGTtaatgcttttaatattctgtcagAAGGCACAGCTGGAGGATAGGCCAAAAATCTAGTTACTTAAAACACCA-------TTTGTGTTTCA------------------GATACTGTTC----------------------------------TCAACAAGTAAATTCAAATCTTTTACAGAAAGTGCCAGCTGCTACACGGAAGACAGTGCTGAGAACATTTCCTATTCAGAATGTAGGGTCATAGGGTTAATTATCTGAGGGTCATTATATCAAAGTGCCTGTGATCAGATTTATACAATCTTCAGTTATTTTCCTCCATTACATAGTTTGTCTCGCTCCAGTTCCACTTATGAGTCTGAAATGAAGACAAAGGAGATTTTATGGTTTCCATTGAAACACATTACATTTTCTGCCTCCaacatttttcttccaaattcacCCAGTTTATCATATCTTGCTGATTTCTATTCACTTGTCTTTATGCAATTTTGAcaatgctttttccttttctactctCTTAAATTGTTTGCTGGAATTAGTGAATTTTTATCTACATTATGGAACAGTATCAACCAAATTACTTAAAATGAACAATTAGAGCTTCCCTATGCATCTAAACCTAGCCATCTTTGCTGCaaggttttaaatttaaatcaaataCACAACAATAGATTTTG---TTTTCATATGCACATAATAGttcatattgcttttattttaatatctttactGGCAAGAATAAGgaggaaaa-----aggtaaaattcaAATTAGACATATTTGGGTttacttttaaattctgaaaaccaATGCCTGCATCCCATATGCTGCCCCACAGGAACAGCTCCCCATTCAGTTAGGTAGGAATTATGAACACAGTCTTTCCATTTGACTTTAGGCAAAAGTGAAACTTATCACTGCAGAGTG-AAAGCAATTAAGAGAATCATTCTATTGCTCTGCTTTGTAGATCTGGGAGGAAGCATGTTCCATTAATATACCTGGAAGGTCCTCATGACCCACATTGTCTATTTGAAAAATAGACA-AATCTTCCTTGCGCT-AGCTATTTAGATTTCAGGGTTTATCTGTGATAGAGTTTAGGATTAATTGTACTGACAAATACAGACATTAGTACGATAACATCAACAGCGAAAGACCCCTAAAATATGGTTACATCTATGTAGTCAACTG-TAGGAAATGATAAACTGGGATCAGAAGCTGAAAGGCTGGCAATTCAATGCATGTTAATAGTGAGGTACTGTACTGTGATTACTTGGCAGGCAAATATGA---GCCTACTAATTTATGACTGTAGTGGAATAAGGTGAAAGATGGAATATTGATTTTGTGTGTTAGTTGTATTTGACTCTATTTGGCAGATTTCATTatggaaaaaagaagagcatcAGAAAGTAACCGGTTTGCAAGTGAAAAAGACGAGAACAGAGTTCCAAAATCAAAGACTTGCACATTTGAAAAACCTGACTGGTACAAAATTGCAAAGAGTAAAACATTAAATTTAACAAAACTTTGAGACAGAGGCCTAAACTTCAGAGTTGGAAGTGATG

a score=20588
s chr3           155180858 1746 + 160039680 TGTAAAAGTGCCCACATAAGTTTAAATATACAAGCTCCATCTAGA--AAAAATAAATAAATAAAGGAACAATGAATACAACAGACTGAATTACTAT-GAAACTTAATAGAAATAAATCACTCAGG-----AGAAAGAGAATAATTAGCTGTAATATAGGTAGCAAAAATAGGTAGTTATAGGTAGCAATTAAGAAACCCAGATATTTTAGGAGACTGTGAATATACTTGTTCTTTGAAGGCCCTGTCAAGCTTCTAACACTTAACTTG-------------------------------ATTCATTGAGCCTCTGAGG---TGTGTCTATAAATGTTACTTGAAGGGATTTGTTTAAGAAGAGAGTACAACTCCCCTGGATACCACAAACTCCAGAAACCAAGGCTGTTCAAAATGCTGCCAGTCTACTTGAATATTCTGACTGAATATCCAACAGGAGGGAGGAGGTCAGGT--------------CTGTCTCACCCTTCATTGCATTTTAGGCACTTTTTAGATTCTAGGGGGAGGAGCCAATTTGTCAGCTAGGCCTAAATTTATTTTTTAAAAGTAAAGAATGCCTTCAGATTCTCAGATCTGAGTGAGTAATATGCCAGCACTTAGCTCAATGCCCC-CCATTACCCATCCTAACAGTGTTACAGAACAGTCCATTATTTTGTTTTATGGATACTTCTTTA-GGCTTCTTATTAAGAAAAAATTCCCTAAGAAATGAAC------AACATTTTTCCATCATATTTGAGTCGTGAGCCTTTTTAGGGATAAAGGAATGTGATGAGCTAGAAAAGGGTTCTTGATAATGTCTGGTTCCTATTTTCAGGTCTAGAGGGCTTTAAGTGTTCCTTCCTTGACGCCTGAGCCTCTTGACTCCTTGGCAGGGACAGCAGCCCTTCTTGGCCCT--CATTTTGCCCTAGGAGAGCTTAATGGGCAAATCTGTGCTTCTTTATGAGGTTTTCAATGGAatcatcatcatcgtcatcgtcatcgtcatcatcatcatcatcaacaacaacaacagcaacaacaacaaAAATCAGGCATAACTTATGCACAGGGAAGTTTCTCATTTTAGTTACTTAGT---CAAAAAAATCACATTTTGTTAA-----AGATGTTAGCTATAGCCCAAGGATGGGAAAAATATTCATATATGTTAAAGGACTAATAGTACATGAAAAATATA------GAGTTTTGGGGACACCAATGGATGCGCTTTAATTTCCACTGTAGTATTTTGCCCTCTTGTGTTGTCTCA---ACATAGCTAGAAATTACCCTAATACCTGGGTTTTGTGTAGTTTTAGGACTATTATTTAAATCAC---CAAAGTAGCTATTATTTCTAAGTCTGCATTTCAAAT-GCCAGTTCTTTTTTTCTCTAAATTAAAAATATACTATATGAATAAAGAGTGTTAAATTAAACTATGTGATCCATATTTTCCATGATGCAA-TAAGCTGGATAAAAGGCTCTTTCAAAAGCCGTGTCAAGCAGTGTCTGGAAAATGTGCACCATTGTATCTCTAGGCATTTCCCTGCACTCAGGCTGGGTCTGACACGCAGAACAAAAATGTGCTAATGTCATCTTCTCCTCTGCTACTTTGAACCATAACATGACAGTTCACATTATTTTACGTCAGTGCCCTTCATATCCAAAGGTTGTGCCACCGCTGCTATTGTTCCCTTCACATAGAGAGACAGGTAACCTTTAGGCCATTTTCCTTGGAGTATATTTATTCACATTACATTAATTCAAAAATAGAACATTAATTTGAAATCTAATATTATTAAAACATTT
s HiC_scaffold_1 142224537 1662 + 233722169 TGGATAAATGCTCATGTATTTTCAGATACAGTAAgaacattttttctaaaaataact---taaaagagTCACTAAAGCATCCATCTGAGTTACAGTTAAAacgaaataaaaataaataggttaGGGATTAAAACAGAGGTAAAGGAGCTCTAATAAGA-----------------CTGTAGGTTGCAATTATGAA-Cccaaatatct------atttttaaattagctATACTCTGAAGGTTTTGTTCAGGTTTGGacactttatttttgctttgaagttTATATCACCAGGACTTACCATAAACTGAGCCTTTTAGACTATGACTTTGTAAATATTCCTTAAagggatttctttaaaaatagtata-aCCTCCTCTGGCAATCGTT-------GAAACTGTAGcttcacaatat-cttttgttct--ctgcatattttaaatgaatcttTAAAAGATAGGAA-AGTTGAGgtgaaaataaagaaacatttatcCCCATTATTCACATTCTAGATGTTAACTCAATTTCAATGGAAGGATGCATTTTGTGAGGCAAGTCCCAACTTAGAGTCACAGAGTAGACACCGAATATAGACACTTAA-----------TAAAAGGTTA--------TTTAATGTTCCATTATTATGtattaaaattgtattaaagAATGTTTCATG-----GTTTTACTGATAGCCTTTTATAATCTTTTAGtaagaagaagaataaaagaaagaaaaccaaacaaaaatcttCCCAGTGTATGTGAACACTATATCATTTATAGGGCAGGAGCATGTG-TTAGGTACAACATGTTTCCTTGCAATGA--AGTTTCTCTTTCTAAGCAT-GAGGATTGGAGGC---CCTTTTATAACATATTTGGAATATAATTCATTGGCAGACATGATAGAAATTCATAGCTCTATTATTTTGCTTGAAGACAGTTTAATGGgcaagt-tgtttttttcttttttctttttgttagaaacatta---------------------------------------------------------aaaataagctAGCAACATTTTTATATGGGGa-gtttatatttgtgtttatatattttgcttactagttataatttattaatttttgaaggTAAGAAACAAG--AAGAATTGGTAATTTTGTGGTCAGTGTTTGAGGGTCCCCAATCAATAAAGGATTTAATCAAGGATTTTTGAGTATGC--ATACAGGCACCTGATTTCcca--------ttctcctctcttctttcaccCTAGATATGTAGTTAGAATCCActttaatatcttatttttac--AGTGTTAGGACTAGTGCTTCAATAAATGGCCAAGTAATTgttatttctaaggtgacaatttAAATAGCTAATTGttgt-----aaaaactaaaaagatactATA--------GAGTGTTTAAAAGGGTTGTGTATGTTATTTTCTC----ATACAACTCAGC-------AAGTTTGTTTCCACAGTGGTGTCAACCAGTGTTTAGGAAATATGCATCCCTGTATTTCTAGACAGTTCCC--CCAGAAGTTTGGGTCAGCGATGCAATACCAAG-TGAGCCCTTGTCACTTTTTTGCTTTCTA-TTTGCACCATGACATGACAGTTTGCATTATTTTATGTCAGTGCCCTTCATATCTTAAGGTGATACCATTGATAATATTTCTTGCCTGGTATATATGGACAGGTGACCTTTACCCTGTTTCACTGAAACTATATTTATTGTCAGTTCCCTCATTCAGGTATATAAATACCATTGGGGACCT-TTGTTACTGAACAATTT

a score=22968
s chr3           155187373 1023 + 160039680 ATAGTAATAAGTACTATGTCTAAGTACCACATGCAAGAGAGTGGTAATAGTGAGGCTGTGCAAGTCAAGTTCCCACAAGAAGGGATACAAGGAAT-----AGCAAATTATAGGAGGCACATTTACATG------------------------GAACAAGGCTGTAATGGTGGTTTTCTT-TCCCATATCTGAAGGTG-----GAACATGGAGAAA--TGTGCT---TGAAGTTATTAA---GCTCCTCGCAATGTATTTGATGTAGCTTCTAGTGTA-TTTGAAGTGAAAATAAGGTCAGCTCTTATGCTGTCTGTCTGTCTCCTCTGATATAGGTCAGAAGGCTATGAAAGCTGAGTCTGAGGACGAGGAAGTGGACACCGAGTTTAGGATATCTGCCATGAAGATCCCTCTATATTCCTCCAGATCACTCAAGTACGGGGCAATGCTGAAGGAGATGAAATGGGACTATTTCCCACAATACCTCCAGCCA----TTTCCTGCCACTCGTCAAAAGCCACCAGTTAAAAGAGAGACTCTATGGAAGCTAAAGAAAAGGAGAGAGTTTCTAGCCACACAGAGGGCTGGCATGAAGCTCCACATGTTTGATGATGTTGATAAATATTACTCAGAACAAAAACAGCACGAGGAAGAAGCAAGAAAATTTGCAGCCATGGTTACAGCACAAGTTACCCAGGAAAGAGCTAGTGTCAACATTAGAGAAAAGTTAAATAAGAAAATTTATATGACAAGGAAACTAATGGAAAAGGATAATGAGACAATTCAGAAAGGCTTACAGCAAATTTGGAGGGAGAGACTCGCCTACCTGGAAAAAGTTAGAGAGCGGAAATTTATGTTTCTAGCTGAAAAAAAACTAAATGCTGCAGACCAGTCTTTAGTTATTTCCCTCAACAATGAGAGGTCCATTCTGCTCAAAGGAATTACCCAAGTTGAAAGACTGAA-------GAAACACATGTCTGAAAAAAAAGCAAAGCACTTAGATGTTATTGAAAAATGGGAAGAACAAAAATATAAGCAGGATTTGTTGATGGAAATGAAGAAACTCAGGTAAGT
s HiC_scaffold_1 142230115 1044 + 233722169 atattgataAGTACTATGTATAAG-----------AGAAGACACTATCATTGAATCAGTGCAAGTTAAATAATTATCAGAGAGAGTTCAGGAAATGTAGAAAtgcattttaa----tgcatttatgTGTTTATGTGCATATTGTTTGTGCATAAACAA--TTCTAATACTCATTTTCCTCTGCAAAATCTCAAGTTGCAAAAGAACGTGGGGAAAATGGTGTTGAGTAAAGTAAGTAACAGGTTCTTGTCGGTTTTATTAATATAGCTTTCAAAACAATTTGCGCAGAAAATAAACTAAGCTCGTATTTCATGTGTATCTGCTGTCATGTGTAGGTCACGAATCTAC---AGATGAAACTGAGGATGAAGAATTGCGTAGCAGTCTTAGTATATCATCTTTCAAACCACCCATATCTGCTTCGGACCCACTGACGTATGCTGAagcattgaaagagaagcaagaagGTCATTTGCC----TGCCCTCACACAACGTTTTTATGTCCCTCATCCAAGCCCACTAATCAAAAAGGATGCTGTATCAGAG---AACAAGACAAGAAAGATACTTCCTACACAGGGACCTGGTATGAAACTTCAAATGCTTAATGATATTGACAAGTATTACACagaacaaaagaagcaggaattCCATATGGAAAAGTTAGCAGCTGTAGGCACGGCGAAAGATGgcagaagaaaaattattctagctgctgataaaaatttaaatgagaaaaaatatatggaaaagaaGCTATTTGAAAGACAGAAGGAGACCATTCAGAAAAGTTTACAGCAACTTTTACAGGAAAGATTAAACTACCTTGCAAGAGTTAAAGAGAGGAGAACTCTCTTCCtagaacaaaagaagcaaaaggccaCAGAGCATCTATTAATTCAAACCTTAAGTAATGAGCGCACCCTTTTGCTCAAAGGAATGCTTAAAATCGACAGATTGAACAAGAATGAAGCA---gtcctaagaaagaaaaaa----ttggcTGTTCAGGAAAGACTTCAAGCAGAGAAATATAAAACGGTTTTACTGAAGCATATGAAGGAAATTAGGTAAGT

a score=14366
s chr3           155193391 1105 + 160039680 GCAATGAAAATCTCATAAATATTAGCATGATATGCATTGAATATTATTTAACAATGTAGTGATACTATGTGAACTAAGCTTTGTCCTTCTTCTGCTTATGAATGTC---TGTTTGGAAAACATTTAGTT-TCATCTATACGCCCCAGCTTGT-ATGGCTTTTGTAAACTAAAATTATCTCATTTGACTTTTCTTTTTGCCTCATAGGGTGGAAGAAATCCAGAAAAGACACTGTGAAGAGAAATTTGTTATTGATACACTCATCTTACAAAAAGGTTATGAAAGACTTGAGGAGGCTAAAGCAAAAGTTGAATATATT-----AAGACATTTTATACCTCTAAGTCTCA-CAAAA-GGCGTAATGAAGCAATGCCAGATCACATCTGATGATAGTTGTGAATTGTGATCACTCTTTTTACTTAAAGGATCTCAAGGTCATACT---GGGAAGACATGCT-CTCCACAAGACAGATCTAGGGATAGCTAGGTTCAGGATCAGAGAGAAGATATCCCCAGATGTTTCTGGTACTGACTACAATGCAAATCCTGTTGATTTTGCACCCATGAAGGGTCAC-TATGTATCTATGCGCCCAGGAGAGTATCAAAGCTGTCTGAGTTCTTCTTTAAAAACTCT--TCCAAAGACTGCAGGCTTTCATCGCTCTAACAACGACCAGTTGTAAAGCTGCTTTCAATATTCTCT------GGTAATTTTTTATG---TTATTGCCAAATTTTATCAAAATATTATATGCAGTAAAAACTTTAATTACCAAAGTTCATA--TATTGAAGTGTATTTCCTGTTTATCttattaaaataatttttaaatgttttaagttttcaaaataaaaGTTTCACCAATGTATCAACTACttatattaataaaaattaaaaGACATATTATGGAA-----CAGAACATTC-TACCGTCATCCTTG---------AAAACACTACTGTTTTTACTTTTGATGTGTTTGTCCTTTTAACAGAGATATGAACATGGGAAAGCAAGAAAAGAATCAAAAGGAAAATATGTGAAAGT--ATATCA-------TGGCAATCACAAACTATACAGAAATGGCATTTAAGTGTTTCACATTAGTGGTAGAATATTTGAAAAA-CAGGAAACATTAAACATGTAAAAA
s HiC_scaffold_1 142243476 1060 + 233722169 gCAATCAAATGTTAACAAATATTAGt-caatatg-----aatattttt----aatgacatAAAATTCTATAAATGGAGTTCTTCCCTT-------TTATGACTGTAATGTGTTTTGATGAAATCCAATTGTCATTTCTAATAATTTACTTGTCATTATTTCAATCGCCTAAAACCACC-------ACCTTGCTCTTTTCCCCACAGGGctcaaaaaatacatgaaagacaCTGTGAAGAAAAGTTTGTCCTTGAGATGATGGCTTTTTATAAAGCCTCTGAAAGACTTGAAGACGCTAAAGCAAAAGTtgcaactgtgaaaaaaaaaaatctggcatcT-TAATTCCCAGCAAAATAACAAAACGAACCATTGCCAAGTAACGTCCAGTGGTCATCTTCAATGTTAGCAATTACTTTTAGAAGAAGGACTAGAAATTAATACTCTAAAGGAAATATGCTACATCACAACATGTGTTTGCATATAAATC--TTCTAAAATACAAAGGATA-------AACTATTTCTTATGTTGGTCGTAATTTAAATAAAGTAGAGTTAGTGTCTCCCAGTGGTGACTTAAATATCCAGATTCCTAAGGAACAAGTAAAACTGATTACATTTGTTGCAGGCAATGCTAGTACAGATACTgc-------------------------------taatattgttttccatatctTCTCAGTGAAGGAATTcactctgccactattcctgacTTTT---GAGACATCTCATATTTTGAATCTTTTCATCACTATCTTTCATatctatttaattatattttctgtttgttttattaaaaCTATTTCCaacttt------ttctcaaaataaagttcTAAACATTGCATTAAagattcatgttttttaaa---aaaatacagacaatACAAACTATCCAAACATTCTTATTACCTTCCTTGTAGAttgtaagattatttttatttttactttt-atgtgtttgcctttttattacagat-----------agagaaagagaagagtc-aaagagaaataagagaaaatccATATAACTTGTATTTGTGACTCTGAAGTACAAAAAACTG--ATTTACTTAATACA--------GTAGAgaatttgaagaattaaaaaatattaaaaagatacaga

a score=15687
s chr3           155201317 512 + 160039680 TATACTTAATTACACTATACACTACTTAGCCCTTGCAACAGTTTCAATAGCAAAATGTTACTCT-------------------TCTATGAAAATATTGTTTCCC-TGTATCGACAACAGGTTGAAGATTATATTCTT-TAGATTGGCAAAACCAAGACAAAACCTCCACTCTTTGCCA-TAAGACCTTTAGATGAAAATGCCCCTGAGTAAATTGGATTGAATGAACTATTTCAACTATGTATCAGTGGC------ACCAACTTTTGGCTTAAAAGCCCCATTTATAGAAG----AAAAAACACCCACTTTCTTCCTTTCCCACATATATGAAGAAAG------AAATCTAAACCTAAAAACTGCCTTTTCTTTTACAATTTTACTTGTGAAAATGTGGTTTCTTAGATAAGAAAGAAGAGTGATTATGAGAGTTAAGTAAGGAATGAAGCACTTTATCATCATGTTGGGAAGGG-CACTCCCACTCTCCCTGCATGCACAGCAGTTAACTGctctctctctctctctctctctctctctctctctctctc
s HiC_scaffold_1 142258386 535 + 233722169 tatttttaatttc-ctgtatatt--ctAGCCTCTGAAATGGTTTCAAGAACAAAGTATTGCCCTCTAaatatatgtattcatttttactGAAACATCATGTCTGGTGTAGAGGCCATAGattgatgaatatatttatagaGGTTAATAAAACTGAGACACAAGC---ATTCAATGCTACTGAAATTTCTAAAGGAAAA--CTCCTTCCCAATTCT--TTGCATAAACTGCCTCAACTATTCCACAACTGCTGAGAAATCAACTTTTAGTTTAAAAGCCCCatttatagtaattttaaaaacctccTACTCTC--CCTTTTCAACGTTTa-gaagagagggggaaaaagccAAACTTGAAAGCtgaatt--attttagaattttacttCTAAAAATGTGGCTCCTTAGATAAAGGCGAAGAGTGATTATGAGAGTTAAATAAAGAATGAAGTACTTTATCATCGCTGTGGGAAGAGTTCCTAACACACTACCTGCATGCATAATTGTTAACCATACTCTTCCTGGCTTCCTCTC-CCCTCTAGCTTTCTCCC

a score=9913
s chr3           155206315 602 + 160039680 ACTGTTTTACTTAGTTTTTCAAGAGTATTTTCCTATTGTATGTATATGTGTTTATAATATCAGTACTGATACAATTT---------------------TATGAATTATTAACATTTTAAATGAAGGTATTTCTATCA--ATTTCTTGGAAATGTTGGATTGTGTAACATGGCTTGTTTGGTGAAAACAC-----AGAGAAACTGCTGTCATTTAACTTTAAGTGGTTGATGTCTGCTCCTGTCC--------------ATTTTGTATTGTTCCAC-----AGTC-TTGCCAGAATGA---------GAAGTATTATTCTCCTGAGTTTGCCTTTCTCTTCTTCTTGTAAATAACAAGTGACAGCCTTTGTTCTCCAGATTACCTTTTCTCTGAAGAGA------GAGATCACCTTATTTCTATGATGCCCAAGCCCATTGTTAGGAGATAAGAGCCTTGGGATCCTATTTCTACTAATGCACTACACAATCCCTAGTGTGGTTAATTTCACCCTAGTGGTCAGAAAGAGGTAATGTCCTT--CTATCATAGTGTTACCATGGACACTAGGAAGAAGTTGATGCTCTGTGTTTTCTGAAATGGATGAATTACAAATTATTAACAATTTTATCTCCCA--ACTGTCAGCccttccttccttccttccttcc
s HiC_scaffold_1 142263388 627 + 233722169 ACTGCTTTGGTTA-TTTCTCAATTATATTTtccctttctgtattttttggttCATAAAGT---TATTAATATCATTTCTCTGTTGTTGTGTGATAGTTTCTGAGTtcacatcatttaaaa----aatatttctactagAATATTTT---AATGATGGGTT-TAAAATATGgcttattttattgaaatactaTTTGAGGgaatttttatctttcacttCTCACTTGCTCAAGTCTAGGGTTGTCCTAAAATGTCTGCATGTCTTTTATCCCTCCATTTCTaagttactttcaaaataattccaAGATGTAACAGAATTTCCCTAACTttagttttcctttcctcctaTAAATTGCAGgcaatattctttttcttccgtatttgtttttcttcaaaaagacTTGCTTACATC--CTTATTTC-ATGGTGTCAGAGCCCAATACCAG---ATAAGAACCTCAAGGAACTATTTCCACTAATGAAGCCTGTGCTTCCCAGTACAGTTAATTTCACCCTTGTGGACACACGGAGTGCATGTCCTTTGCTACCAGGGTGTTAACATAGATTCTGAAGAGAAGAT---------TTTTTTCCATAGCAGATGGGT---------------GTCCTGACTCCTATCACTATGATTTTTTCTCTACTTCCTTcattcc

a score=29299
s chr3           155234386 1691 + 160039680 CATCACTGATGTCAAACAGAAAAATGAATTCCATTGTGCACAAAAGTATAATATTAACATATAGCTAGAGGGTATTGTTCCTAATTGTCTTTTTTTTTAAAAAATGGGGATATAATTTGTTTCATAACTGCTTAAATTTATCTTACAGTGATTTGAAATGTTTTAATTGCAGAGTGTAGTCCATTTGAGGATTGAAAACTGATAAATAATTCTGGAACCAGG---ACAATCATGAGAA--CTCCCATTCCTTTGTTTCATTTTTCATGCACATTAGTTTCAGTTTTTATTTCTTCTCATCTGTTTCATTTC--------ACTGGGCTAAGCAGTCCTTTGCAATGGAAATTCTTGC----------TACTAGGGATCTAGTGA---------AGACTAGATGCTTTATCAGTGGACCTTGGAAGAGACACCCAGGTGTATCTTTCTCTCAACTCCCAGAAGACCCTGTACCTG--TTGTGGACAGACTACATTTGTGTGTGTGTGTGTTG-AAATTCCATTAAACACTAAATTGTACAATTAAG-------------------------------------------TCAACACTATACAAGAGTCTGATTTATACAGATCTTTAACCCTGAAACACTTGATAGTACTTTGTTAGCTAGAAACATCTTTTGTGAAAATATAAGATG----------------------------------------------AAAGGATG-ACATTTG-TTGAAGGTCTGTAACTGGAGGAGACCATCCTCCCAACAA-----------ATACGGAGTAGGAGAAA-----GCCATTGGTTTTCCTTTGAATTTGTCATACCTACCAGTAGATGGCACTACATATTCAATCTTATGGGAAGAATGGGAGGCATTACAATA------TCCCCTAACAACCAGGAA--------CATGAAGTGCTCCCCAAATCCCCAGACAAAACCTTAGCCCTTGT------------TTTGTTTGATAGCACTTCTAAACATCTCCCTTTATTTAACTTGAATGTTATTAAATATTTTCATGTCATTGAATCAGAAAA--ATGGTCAATGAGATCAAATAGAAGAAATGTAAGCCAGGTCTATACTAAATGTTTAATTCACGTGTGTAGATTATAGGGGGGAAGGAGGGTCACTTTTCTATTAAAACAGTAAGTATGCTTCGACTTCTCTTTGAATCAGATTATTCTTTTATCTCTTAAC----TTATCAAATAAAAAGTATGGGCTTAGGTACAGAACAT---ACAATAGCTTTTGTGGAAGAAGTGGAATGCTATAATGGTAG------------------------AACAGAACCCTTAGTGCATCTAGAGACTTAA---------------------CAGAAAGGGTCAGCATGGCTAAAATG---CCATGTGTACAGAAGCAAGACTAAAGGTGAAAGTCTGCATAGTGAATCAGCATCTTTCCTGAAATGAGTCAGCATCTTCCTGAGATGAGTCAGCATCTTCCCTGAGATGAGTCAGCATCTTCTCTGAGACCATTCAGCTCTCTGGGATGCTGTTCCAGGCAGCACACTGGCTCATAGTAAATATGGTTCAAAG-----AAGCCTAAGAGAAAAAGAAG----TAATCAGACTTTGTCTGAT--GCATATTGTTCTCAGTGCTCAAAGGACACAGATAGAAT-------GGCTAG-----------------------CTGTTCATACACAAAGCATGGGGAATGAAAG--AGCA-TCCTGAATGTTAAGCAACTCACTTTGGGATATTATTCTTTGTTATAA---TTTTTCCAGAGACAAAGATGAAGG----------------CATGTTCTTTTTGTAGGGCTATGGTTTAACACTG-TCTAGGT----------AACAATGCCAAAAGTAGACAA-TTAAGTTTTGTCATCATTGTTGCATTTATTCAATGAATATC
s HiC_scaffold_1 142279534 1809 + 233722169 catCTGTGATgtcaaacagaaaaatgaatccCAATATGCACAAATGTATAATATTAACATATAGCTGGAGGGTATTGTTCTTAATTGTCTTTC----------ATAGAGATAGAATTTGTTTCACAACCACTTCAATTTATCTTGCAGTGATTCAAAGTATCTTAATTGCAAGATAAAGTCTATTTTAAGGCTGAAAGATGAAAAATGATTCTAGGACCATGGTAGCAATATTgagaattttcctgttttttcattctattttt-------att--------tttttgtttcatgacaattattttctttcttacctATGCAATATTAGGTAACACTTTGTACCAGAGCTtctcatataatataaatataaatcaccCAATGATTTTGTTACAATTTAGATTCTTTTTAAGTGGATCTGGAAGGAGATATGAAATTCTATATTTCTCTCAAGTTCTCAAATATTCTGAGTCTGACTGGCTGGTAGACTAAGTTT---------TGTGATGAAAATTCCATATTATATTGGACTATAATATGAGGTGTAGTATAGATATTTACAGTACTATAATTTATACTATCTTATTCAGCATTATATACTAGTTAGATTTATTTAG----TTAACCCTGAGTCAGTTAAAAATAGTTTAGtgtctaaaaatgt-ttttgtgaCAATATGAGACAACAATGTATTTAAACATGGTAGCCTTAATAAATAAGTTATGTATATAAAGGATACACATTTGCTTTTAGGCCTGTTATTTGACAATACcatcttttcaacaaatgttgtttacatattgtataGAAGAAAGAAGTGTGATTTGTTTCGATTTGAGTTTGCAGTGTGTACCAGTAGATGGCAGTACATATTCAATC-TATGGAGGGGGTTTGTGTAATTAAAGCAGAATAGGCCCCTAACATTAAGGAAGGGAGATTTCTAAAGTGCTCCCCAAATCCCTAGAGAGTCGTAGAACTCTCATTTGCAAAGTACCTTTGTTTAATACCAGTTCTAAATATCTCCTTTTACTCACTTTgaatgttaataaatattttcattgcaGAGAATCCGAAAACCATGTTCCATAAGGTCAAACTTGACAAATTTGCAGTTGTACTATATTTGAGAGTTTGTTTACATTTGTATGTTAT----------------------------------GTATGTATGA--------------GGAACAGATCAAT------TTTCTTAATGCgagtatcaaataaaaa-tatgggaTTAGGTAGGGAGCGTTAGACAAT-GTTGCTATACAGGGAGGAAAGTGCAATAGTCATAGGGGAATGAGATTACTGCTATAGACAATGAGACCTGCA--GCATTTAGAGAttcaaaatgatatttttttcttttataaagagaGGTAAACAAGGCTAGGAAGAGTCCAGGTGTGAAGAAGCAGGA-------TGAAAGT-------GTGA----------------------------------------------AGAATTTTACC----------------CTTCAAGGATGCTATTACGCTCTCACTG--GCTGTTCAGGGTGCTACCCTATCTCCTGTTAAAGGTAGTTCAGAGTTTATGGGctcagagggaagagagaaattTAACCAAAGTTAGCTTCATAAGGATTTTGTTCTTGTGGGTCGCTGAGGGCAGGCAGTATTAATGAGGTCTGGAATAGGAATTTGGAGGATTTTGTCTGTCCTTGT------CATAGGTAATCAAGGGAAGTATTCCTGAGTTCTAAGTAATTTATATGGGGACAGTTTTTCCTGGTAGGAACCTATTTCCTGGAACACAAAAGATGGGGAATTTCTTTAACATCATTATTTTCCAGTTGTGGTGAAATTCAATGTTGTTCTAgattttctaaaaaaacaaaacttaaggaATAGAAGGTGATTTTtatagtgattattatatttatCCCATAAATATC

a score=7058
s chr3           155238100 440 + 160039680 TCTAACATTATCGTTTTCATCTTGAAAAATTCATTAAATTGTTCAGAAGTCAGGTCTTCAATTTAGGAATTAACAGCTGCTTGGAAACTAAGTAATATAATGATTGTAGACAATACTAGGTCCAGAGTCCCACATTCTGAATTTTTCTACTTGCATTGTCAGTAATGTGTAACACTT------TTCACTTCCCTCTCTCACTT---CATTGTAGTTTGAATACTTACTACAACCAAATACTGTAAGACAAAGAAG----AACACAACCTCAGCTTCCACCATCATTCACAAGATACACTGAGAGGTAGAAAAGCAGAGATAAACATGTTAAAATGAGAACAGTTATCTTA--GATGAGAGTGTAGAGTGTACTGTGAAACACAGAGCAGACAACAGAA----TTAGCCCAGGATAGCTGTAGACATCAAGTGCGGAAAAAAAAATGC-TTTAAGTAGAAG
s HiC_scaffold_1 142282178 402 + 233722169 TCTGACATTCTTGTAGTAATCTTGAAAACTT---TACATCGCT--AAAGTCCAGCCTACAATTTTGAGATTAACTGCTGCTTGGAAGATGAACTGTATAATGATTATGGAAAATACTAGACTCGGAGTCATAGGTTCTGTGTGTTCTTATTG--------ATTAATTTGTATAACTTTGGGAATTTAATTCTCTCGCtaatttataaatcatatatTGTGCACCTACTATGACTAATCATTAGAAGTAAAAGTAATTACAATAGAATTCCTGCCTTCGC-----------AGGT---CTGAGGGACAGATAGCTGGAAAT--ACATGT--------GAGGAGTTACAGTAAGGATAAG--------------TGGGAACTGCAAGGGAGAGAACAGGAGCGCTGCACCCAGGATGGGAGG-------AAGTACAGAGAAGGAAGTTCAGTTTATTAGAAG

a score=32964
s chr3           155250472 1215 + 160039680 ACTTCAGTTCCAGAATACACAATTATTAACACCAG-CAGCTTACAGTGACAGAGATATAATCATACAATGGAGTACTCCATAAC-ACTGTAGGATATAGGAAGTTTCTTTTTGGAA---CCTGTTCTAGAATGACACATTTAAAATGATAGGGGAAAGCCAGGATTAGAATAGCATATAAACTATTTATCTTTGTTTCATTTCTGGAGGAAATGAG--TTTAAAGACACTTATTTGTATATGTTTCCATGCAGAATTGCTGACAGAATAGCTAAGAAAGCAGCCAAATGCAAGGCTTTGTGTAGGGAAGGTATGGAGGCAATGGCTGAAGG--GAAAGTTATGAGCTATTAGTGTGCAATGTGTTTATTATTCTGAATTTTGAACAATACACAAAGATTATCCGTTAAAACCGAAACACCAGAAATGCTAAATGGATTTGATATTTAT-ATACTTGAATATGTATATTTCCTGGCTATTGGGCAGACAAAGAGTAATTCGGGGGTACATTCTTGTTACAAAAGGGCAGGCTGTGTGGTAA---CAGCCAAAAGTCAAATCCAAAATTGACTTCAAGTCAAATAGGAGACATGTCTCAACAGATAGATGTTCTAAGCATTTTGTGGGCTTGAAAGGGGGAAGTGATTCCACCCAGTACACACAGAACTTCATTCTTTC-TTGAATGTTTCCTCCTGCCCAGCCAGACTGCCTGCCAGAAAGGGCAGTGAGGATCGTTGTCTATTGATCCATGTAATTCAAACTTTCTCATTTAAAGAACTCAGAGGAGC-TTACATCCCTCAAATTTCATGAGACATCATGGGATCATTGATTTCCACATATTGATTAGCAGACAATATATCGTTTACATGATTTTTAAAAATAACTTCTTGTAAGCCATTAGTCTTTGTGAAAGTCAGAAAATCGATAGATCTTTCATCTGTTTTGTTGTGACCACTACACAAGGAACAGTTGTCAAATTTCAGAAAGACATGCTCATGAGATAACTGAACAACCCACACC----TCTGTTTTCCTAATTAC-----CTTTTGGCTTTTCTTATTATAACCCTGATTCCTTCCCATAAGTCTGTGTACAG----ACCCATGTGTTGAGGAAGAGCAAAAATTGAGCCATAGAATTTGTTTGTAGCTTGCTTCTATGGGTTGTTCAAAGCTATTGTCAAGCATCAGCTCCAAATGAATG-TGTCTTTAAAGTAACTCCACCCTGTCTTCCAACAC
s HiC_scaffold_1 142299718 1204 + 233722169 ACCTCTGTCcctaaatacaaaattattaacTGAATTCAGATTAAAATGAATGACATATAGCCACATAATGGAATA-TCtgtaattacataaaaatataaaggtgTTCCCTTTAGATATTCATGTTGAAAAACACCATATGAAATAAGATGAAGAAAATCTAAGACCATAATAACATATTAGCTATGTATCTCTGTGTAAGACTTGGATAAAATAAGGATTTAAAGTCATTCATTTTATTGCATTTGCACAAAGAAACACTGAAAGGATATTCAATCTGATAGGTAACTGCAA-------TTTTAGGGACTCAGGTAGCCaatgggaggaggaagagaggattGAAGTAAGAGCTTTCAatgt--ttactgttt--attttttaataacctAATAATATT--CTATTAAACTTTGAGTTTGAGAAAGCTTAAATGAGGCAAATTATTATTATGTGTGCCTACTTTTACCTGCTGAATAAGGGGTAta---------------------acttttattctaaaatatcaaGCAGTAcagaaaaaatagttaaaaatcaaATCCAAAATGGACTATAATTCAAACAGGAGAAATGTCATAATAAGCAGACAAGCAAACCATTTCATGGGTTTTAAAGGGGAAAGTGATTCCATTCATTGCCTGCATAACCTAGTTCTGCAGTTGGATAGATCCTCCTGCCC-GAGAGGCTGCGTGCCAGAAAGGGCAGTGTGGATCGTTGTCTATTGATCCATGTAATTCAAACTTTCTCATTTAAAGAGCTAGGAGACGCATTATGTCCCTCAAATTTCATTAGACATCATTGGATCATTGATTTCCACATATTGATTCAAAAACAATATATAGTTTGCATCTTATGAAAAAATAACTTCTTGTAAACCATTAATCTGTGCAAAAGTCAGGAAATTGGATGAGCTTGCCTCATTTTTGTCTGGATTGCTACACTAAGAGCTGtggataaaatatgaaaacacgtGATTATCAGATAATTAGACTATCTGATTCTTTTTCTGCTTCACACATTGCTCCTGTTTTCGACCATATTTGCTataa-cctgattttttttctttagtcattTGAAAGtatcattcttattttgagaACCAGTAAAATATG-TCTACTGAATTTTCCTCTGGTTCACAGCCACGTTTCATTGAAAACTAC--TCAAATATTAGCACCACGTGGAGGACTTCTCTGAAATAAACCTTCCCATGTCTCCGACAC

a score=28825
s chr3           155266449 2687 + 160039680 CTCCTGACTCCCATGAGGTCATCCCAAAGTCC-TAGACTCAAGATCCCA----------GTGTTCAGGAAAAAATACTGATTTAGATCAGGTAAGGCATTGTTTG---CCACAAATATTTTTTTGGCAGATTATGGCATAGAACCTGAAGTGTGCAAATGAGCATGATTCTGTTTGTCTCTAAAGACCTGAAATAGCCATGTAAATTATGGTGTTAT---------GTGGGACATTGCTTTCCTTCTGTAACTTGTTGGT---GGACCCATGTAAC----------TATAACAAACA---------------GCTCACTTCTGAGTGCTCTTTGTCA-CCGGACCCATTTGTGAACTGTCCTTTT---------------ACTGCACAATTATTATGTGCTCTTCAGCTTCAGCAGTGGTCTAGAAACTCC-CAGTGCTAATGGACTTTCAGGATGGCTATCTCCCATGGTGAAAAGGCACATAACAGTGCTT--------------AGGATTT----TTTTAAATGGTCATT----ACAGCAT-TATACTTGTTTGTAAATTCAAGATAAAAGATGTTTCTCCAAGGTCTTTGAGGATTGTCTTCTCAGGTT------TAGTTTTCTGT----TCTCTTCCCTTCCTTCCCTCCCCCTCTTCCTTATTT-TAGTTTTACAGGCTAGTCTGATACTGTACTAGATAGGTACCC-----ATTGTGGTTGATGACTGTGGGATACAGCACTGAAATAATTGCACCAGACATTTGGACATTTTATGTAAACTTTCCCATTGAACAAGCAGTACA-GTTCTTTTTCATGGTGCTGCTTCTGGAATATAAACATTTTTCATCTTTCTGAATCTGCCACCACCTACTGAGACTATATGACTTCACT-----CCATAGCTCATCAGCTGAGTTTTCTGTTTCTTAGAGCTG--TGATGTGTGCT-ATCAGGTCTGCTAGAGTAGGTGTGTTG--------------GTGCT-ATTGTGAAAAAAAATCACTTTAAATGCAATGGACATAAGATGC---TCATTAATTACTTGATTAATAATATCTTCCTGTGGTAACATTTTCTACATTCCCATTCCTCAATTGCAGTAGTTACTGGATGCAG-------TTTCTTCATTATTACCTGATCTATAAGAAAGGGTTCCAGGATAACAGCTTTGA-GAGATGCTGGCTTACCTGAGATTCTTTATA----AAAATTCTA----CTGGACTAACAACTTCGTTT----------AAGGTTCTAAACCACAC-CAAGAAGAATTACTGTAAACCTCTTTTAAGGTCTTTGTCATGGGGCCTAGAGTCTATTCTGCTTTGTTCTATAAATAGTT----TCAAGTGTCTTCT---AGAAGTAACTTTAAGGGCAGTCAA--AAGCAATTTCCCAGTCAATGGAAG-------------TGTTTACCATCTC---TGTGGATCAGCCCAGTGCATTCAAGATGTAAGTTTTTACCCAGAATTACTCTGCATTACCTATTTCGATTTTTATAAGAAGTTTGACAA-CAGGGCTTACCCCAAATGGAAAACATTGACCTTGAGTTAGGACA-GTTTTCCTGGCAGTTGATAATTGGCCAACCTTTAAACGCCTAGTATGGATTTCTTTGATTTCAGTCTCTCTGGGT---CATCCTGCAGGTAAAGTGACTCACTATCTTTAAGTTCTTTATACTCTACATAAATTTACTCTTAAACCA-TAAAGATTGTTTT-TCTTTAATATCTACTGAGAGTTGGAATGTAATATCATGGTAGTATTCATGGAAATAAAGACTAGGTA-TTGAACTGTTGCTCATTTTTTACT---CATGTGATCTACTCCCTGAGTGATTGCAGCCCC-TGTTTTGTGTTGTGCTTCAATAGTTCTCATGCCTGAGGGCCAGTTGTTTCTAAGTGAAGGGACAGAGCAAACTATATAGTATAGCCACATGCATGGGTTCCAAACAGCTCATAATCTTACTGTATTCTTGGTAAAAATGCTTTGTAGTTGAATAATGCAGTAGAGAAAGGGAGTAAAATGATGAAGAATGATAAAA----TATGTGATTGTCCTTTCGGTGA------GCTCTT-------GCGTCTCAGCTTCCTGCTTGGACAAGCTGTTGGGTCATGGGAAATGCACAGACTCTGTTGTACTCAACATGAGTTTTCATTTAAGAACACTCAGATCCTTGTTTTAACAGAGTGACTTCTTTATCCTGTTCTCT------TGTTGTAAAGTTGTCTAAAATTCTTAACTGTTTACT--TACAGTGTTGAGTAAGGGAAACTCCTATGCTCTAGGAAATAGCTGATTATTTTGAATTACAAGATAAAGCATGTCTTTG---TTTCCAAGATT----GACAAAAATTTGTTAAGTTTTCTGTGTG-AGTGCTTTTCCATGTATTGGAAACCAAGAGGTTGTAGGCATCTATCCATATTGTCAAACTACCTCATAATGCAAAAGGA------AATAGCATGCAGTTTTCCAGGGATTTCCTTTATTGGTCATTAAGTGACAACTTCCCTGAAAACA---------GACAAACTGAGGAGAGAAAACAGCT-------GTTCATCTCATTCATCCA--ATGTTCAGGACAGTGTCACAATGTTATTTCACTCAATTTTGAGCCTTGATAAGTCTGCCTCTTATA--AAAACTATGTTGTTTTCAT--ATTTTTGTTTTATCACTGTTTCTCAAAA----TGTAGACATCCCTTTCTTTGTGTACTT--TGCTTGTTTCATTCTACTTGATTACATAAATTTTGTTGATTACCCACAGTTTATTGATGGAGAAGAAGATGCTTGACCCATGGAGTTCTGT---GGAGATATGTCACTGTAGAAAAATGGCCCATAAGTTCTTACCTTGTTAAAAACTCTGGG
s HiC_scaffold_1 142313561 2833 + 233722169 CCTCTAACTCCTGTGAAATCAGCTAAAAGTAAGTAAAATCAGAGTCCAAAAGCAAAGTGGTTCACAACAAGAAATGGTCTCTAAGATCATAGGCTGCATTACTTGAATCCAAATATATCCTTTCAACTTTTTACCACATAGAACACAAGCTGTGGTAATGGGTAACATTTGGTTTGACTCCAATGATCCTGAGTAACTGCAGAGATT-TGGTGTTACTTATCTGTAATGGGGCATC------------TAACTCGATAGATAAGAAACCATAGAATAGATACATGATTTGGTAAAAATGTATGAATTTAGGTGGtcttttttgaacaatttttgtTGGTTGGATCCACTTGTAAATTAACCTCCTCACGTGCCCATTGTCACTACAGAGTAGAAGTACTTTCTTCAGCCTCAGTAGTGTTCACGAATCTCAGTAGTATTAATG-ACCTTTGCAACTGAGATCTGCTGGGGTGCATGGACCCCTAACAATGCTGGCAGATGacaattaattatttaatattccAAATGCTcatttacaaaaacatctgcACTTAGTTTTAAGGGCAAGATGATAAGTTTTCTTAGAAGgcct----gagttattttttttatttcttagctaCTTTTTTGTGTCAtcatctcctttttttccttccttttcctctttttttcttcttttctatcttctttttattct-caCTAGAATTTTCTCTTCGTTATTGTGCTCTTAGACTGTGCTTTACA----TGA------------------TCATACATCCTACTGGACTCTTCCTAAAGAGCAAGCA---CATGCTTCTATTCATGCATATGCTGGTGACATATATAC--TCTATAGCTCTCAGGCTATAAGACAAGCTATTGAGATCGGTGAGCTTCAATTTCACCTGTACCTGGTCAATTGGGATTT-GGCTTCATGAGTCAGAATGGTGGGAGTTGAACAGG---ACAAGGATAAGTGGACTGATAAGGTGACTTTAGTGCTGATAGTGGAGTG---TCACCTTAAATTTGTTAGCCCTAAAATATGTGTCACTGATTATTTGACAAACA-TGTCTTCCAGAAATACCACAT-CTGCATTATTAACCCTCTACAGTTGTA-TTATCCAAAGCAAGTATGTATTCCTCCA--GGTATCC--TCTGTTGGAAAGCATTCCATAATCAGTGTTTTGGTGAGATGATGGGTGAAATGAATTTCTTTACTGCGTAAATTACCAAAGCTTTCAATAGCAACATAGTTCTTCAATTTCCAAGTTTCTAAAATTCTCATATGAAAGCTAACCATGGaacccttttaaaa-atatctctaagGGCAAATACTTTATTCCCCAGTATTCTACAATTATCTGTCTTCTCATGTCTTTTGGGAGAACTAACTCTGAGAGTCTTGAATAAAATAAGACTGAGGTCAATAGAAGCAACTTAGGCAGCTGATTACTGTCTTCATTGTAGATAAGCTCTATGCATTCAACACTGAAGTATTTCTCTAGAATCACATTCTGATATTTAAGCCAAATTTTGTAAGAAATTTAACAAGAAGGAATTCCTCCAGATGGAAAACATTGACCCTTTGTTAGGACAAGGTTTACAACCCATTGATAAATGCCCAGGCTTTGAACCC------TGGCTCCTTCTGATTTTAA-CTCTGTTATTTTCCATCTACTGAAAAAAGTGTCTTAATTTCACTAGTCTATTTGTATACCTAATAAATCTATAATGGGGTTAGTAAAAATTGTCCTCTCTTTAAGATATGCTGAGAATTAAGCTGCAACATCACAAGAGGTTGTTCAGAAGCAAAAGCTGAGCAGTTGACCACATATTCCTTTTACACTGGTTGTGCCCTCTAGGTCTTGGCTTATTCTAGTACCATTTGTTGTGTAGATCTGCAACAGTTCTTTTTCCTGAGGGCCAGCTGCTGATAAAACATGGAACAGAGTCAGATATATAGTACCACCatgcaaaggaagtaaaagtaactgaaaatattataaaattttctacCCGAA--CTCTGTA---GAATAAAGCCCAAGGCAGAAGAA--AATATAGTCATAAGGGGTAAAACTGTCATGCAATTG--ATTCCAGTGATTGCTTGCTCTTTAGACCAGCATCTCAGTCTCTGACTCAAGAGGTCTATTGGATCTTGGAAGGTACCAAGACTTTCCTCTGGTCAGTATTCTTTCTCATCCATGAACA--CAAATGTCTGTAGTCAcata-------ctttatttccttttatgtcAGACATTATAAGGTTCTCTTGAGGCAGTTA-TATTTAGTACTATAGGGTACAGTGGGAAAGGCTTCTGTATTCTA-GAAATCTCTACCAATTATGAGTTACCAGAGAAagcatcttttttatctttataagaTTACCCAACACATAATTATGAAGTCCTCTGTGTGCATTAGAATTCTAGGAGTTGAGAAT--AGAGGATCCAGACAGCAATTAATATTATTGTCTTAACTTACAATGCAGCTAGACAGTTTAAATGTGTACATT-------AGATTGTCTTCAT-----------TCAAAAACTCACTAAAAAAACAGGATGTCAAAAAGCCAAGTAAATAAGATAAATTCAATAGTTTTGTATCATGAATCCAAGAGGCTTTGGGCTCT---------TTACTTGCTTGGGTTCTGAGCTTGAACATGGTTGCAGCctacaacaaaattttacttttcccATTAAATTGTATTTAGTCATCAactgttaaaaatataatagacATTTCTTGGATTATGTAGCTCATGCTGATTGCA--CTTCTTGATTACATGGACCTGGCTTACTGACCACAATTTATCaatcca-aggcaggcacttaacccaTGGAGCTGTGTCAAGAAAATGCAATATTCTGGAAAAAGTGTATATGACTCCTTGTC--ATCATGATCTCTGAG

a score=10288
s chr3           155271039 383 + 160039680 aCCTCAGTGCTCTGTACCCATTCTATAAC------------ACAGATTCAATCCCAAGAGTGTACACACT---CCCCTAGCAGAATTTTCCCAGAAACCTTCAATGGCTTTTAGATAAGAGGCTATCAGGAAATTCTTTCCCCTCTTGA--ATTCAATATTTTTTTTAAATAGTAACCTTTTCTGTTATTTTTAATTGCTTTGCTCATAAGCAGAGCATTGGGGCTACCTTTTATGGAGCTCAGTTGAAGTTTAAACAAAGTAAAATTTAATTTGGATGTCTTGGACTTGAACATTTTCTAGGAAGTATAGAGATGTTATAGGTTCTCAGACATAATCACCTGGAAAGTCTTATCAAGAAA-GTTTAGTGAAGAAATACTGGACCCCAAAATTCATATATT
s HiC_scaffold_1 142318110 389 + 233722169 ATTTCAGCTTCATGTCCCTATTCTACAACTTCAGCTTGCGCAGGAATTCAATCACAAGTGGAGAGACATCAGCCCACTAAGGAAGTTTTCAAGGAATCCTTCCTTGGATCTTTGCCAACAGGCTTTTAGAAAGTATTTTCACCTTCAAATTCTTCAATATTCTCTTCACA-AGTCATGTTTTGGTTGATACTTACTTGTTTTGTTGGATGACAGAGCGTGAAGGAAACCTTTTACTGAGCTCAATGGCAGTTTGATGTAAGTAATATCTAATTTGGATGTTTTTGGGCTGAACATTTTCTGGGACATGGAAAGATGCCAGAGCTT-----------TCAATTGTAAAGTTTAATCAACAAACGTCTAATGGAGAAAAGATCAGacttaaaatttgaatatt

a score=49972
s chr3           155281211 1254 + 160039680 TACCTACTCCAAAGTGTTTA-CGTAAAAATAttttctttttttttttttttttttGGATTGAGGGGATGAGATCTAAAGCAAGAAGGAACAGGAAATTACATCTGTAAGAATTTTAACTTCGGCTTCCAAACTCTACTTTCTTGGTGGATGAAAAAGAATGGAAGATGAAGCTCTGCCTCATGTTTTCAAGTCC-ATGTTTAATAAAA-TCAAATGGAATTCTGCCAAATGGGTGAGTGGGAGTCAGATGTATAATTAAACTTCCTTCTGGAGTACATGCCACTCAGAGATCAAATGGGGAGCATCAAATTGGTCCTTCCACACCCGATCTTTTGCCTCATGGACAGCTAGCAATAATTGTTTTTTTTTTCCACCATGGAAATTTATAGAAATATAGTTTT-AAAAGTACATCTTT-AACCCATTAAATCATGTGGGCACACATTTAGA-GAAGGTAAAAATGAATAAAGTATTTTAAAAGCATGCTTTGTATAAGCCATTACTTTCTGTGTGCCCAAATGCAGACCAA------TTCTTTTAGATTTAATAAGATATATAAG--ATACCCCAGGCTTTCTTGCAAAGATCTCATCCAGTAATGGTTTATAATAAGTGCATGGATGTAGCTGGGTGATGAATGACATTTTGCAGGAAAACACTGGATATTTGAGTTTGCCCTTTTATGACATCTAAGGAAGGAGAGG-TAGCAGCCTTAAATACA-ACACTGAACG-AGAGCAGCTGGAGTCTGGCATTGCCTTTAAATACCACCCTATACCGGCAGCTTGCCCTGTTAGGAAGAGGTAAATAACATTTCAATTATAGGAAAACAAGACAAAAATTTTGCACAAACACTCTTTTCCTATTCTAAATTCCCAAAGAGATGCTATTTTAAGTAAAATAATATTTATGATGATTATTACAACTCATTGGATATCATTAAATTGTTATTCTCAAGATCAATATGC-TAAACTACAGTATTTTTAAGGTTGTGTATATTTGTGGCATTTTCT-------ATTTTCTAAAAAAGTAAGTCACTTTCTCCCATGCAATGAAGAGTCTTTTCTTGCATCAAAGCGACAGGTTGCAATTGATCTTTCCCAGTACAGTTAATGAGCAAAAGCAAATCCCATGGG---CCTCAGGAGCAGAGGCCACTCAGTTGTTGAAAATTCCATGTGGATA-TACAGTTTGTCTAGTTCTCTTTACACACTCC-----AGCACACAGACACTACT-GTATTCAAAATCTGGTGTTATTAGttactttt----ttcactgtt
s HiC_scaffold_1 142331447 1235 + 233722169 TACTCGCATCAAAgtattcagaagaaaaataatttccttta--------------ggAATGAAGAAATTGATTCTAAAccaagaaagaaggagaaattatTTCTATAGAA--TTCAACCTTAGCTTCCAAACTCTTCTTTCttgatggataaaaaagaatgaaagataaagctatattttatgttttcaggtCTTATGTTTAATAAAACTCAAATGAAATTCTGCCAAATGGGTGAGTGGGAGTCAGATGTATAATTAACTCTCCTTCTGGAATATGTGCCACTCAGAGATCAAATGGCTAGCATCAAACTGTTCTTTCCAAATATGATCTGTTGCCTCATGGAGAGCTACCAATAG--------TTTTTTCACCATGGAAATTTAAgggaatagatttttaaaaagtaaacatttcaacttgtttaaaaatgtaaggaCAAatttagaggaagagaaaaatgaataaaatattgt-aaatcaTGCTTTGCACAAGCCTTGTCTCTCTCT---CCAAGGTGATTACAAGATAGGTTTCTTCTAGTCTTAGTAAAACATGTAAGTCACTCCCTAGGTTTTCTTTCTAAGACCTCTTCCTGTAATAATTTACTCTAAACACATAGATAGAGCTATGTGATGAGTGACATTTAGTATGAAAACACTAGATATTC-AGTTTGCCCTTTTATGACAtctaagaaaaaagaggagagcGTCAGGAAATATGCACAGTCAGTATAGAGCAG-----ATCCAACATTACCTTTAAATACCATGCCATACAGAGAGCTTGCTCTTTCAGAAAGAGGTAAATAACATTCCAATTAAGGGAAAATA-----------TTGCCCAAACA-TTTCTTCCTACTCAACATCCCCGGACAGAAGCTATTTTA--TAAGATTATATCTAATGTACTGATTACAATTCATTAGACATCATTAAGTAGCCATTCTCAA-ATCAATACGCACAAAATGCTACATTTTAGATGCGATACATGTATGCAGCATTTTCTAGATAGAATTTTTTAGAAGAG---ACGACTTCTTTGAGAGCAATGAACAATTCCTTCTCCTATCAAATCGACAGGTTGCAACTAATCTTTCCTAGTCTGGTTAATGAGCATAAGCAAATCACATGGGCACCATCAGGAG-AAAAGTGGTTCTATTGTTTGAAATCATATTTGAGCACttaaacttttctgtttttgttttcatactttaacAAAGCACATAAACATTACTCTTTTTCTAAATCTG-----ATCACTGATTTTTGTTGTTCACTGTT

a score=6112
s chr3           155282828 266 + 160039680 CTTTTCAGTGTATTGTTGCTTGGGGGAGAGGACATGTTTTGTTCTTATGATCCTGGAGCCATTCAAACAG-ATTGTTGTCTACACTGGGGA--------CTCTATT---------TCAGTGTGCTAAGA---------CTTGGCCTTT-TTCGAATTTGCAATGGGGAGAAA---TACCTCTCCTGCTTCATGACCCACACAGAACTGCTGCAGGCTGGATACATTTGGTATAGTTCT-TCCTCTAGCAGTCATAAGATGTTGACAGGTACTTATGGA-AGAACATGAGACTTATTTTG
s HiC_scaffold_1 142332798 297 + 233722169 CTCTTCAGTTTATGGTTCCTTGAGAGTGAGAATGAACACAGTTCTTATATTCCTGGGGTCAGGAAAACTTTATTGCTCCTCATTCAGTGAATGGTATTACTCTATTCTCATCCTATCGCTGCACTAACATAAAAAGACCTTGGCTTCCCTTCGAGTTTTCAACTGGGAGAAGGGTTATTTCTTCTGCTTCATGACTAGTGCAGGATTGCTGCATGCTGAGTGCATTTGCTACAGCTCTCTCCACTGAGGATTAT-AGTGGTTGA-AGACATCCAAGAACAAAATTTAAACCTCATTTTG

a score=25076
s chr3           155284185 797 + 160039680 GACCATTCTGTTGAATTAGCTCTGGAAGGCTGGCATGTTTGTCAC-TTGCCTGAAACTGTGACACA-------AGGAGTTAATTCCTTC-AACTTCTGCCAGTTAGTATTAAACTGAGGATGCATGAAGCCATCTAATTCCTGATAATAGTCTTTCTCTAGAGCTCTTGGTGAAAAGTATTTATAGTTGAAACATATGTGCCCAAGTCTCACAAGGCACAGACATAGTTATTCATAAGGAGGCCAGCAGTCTGCTCTTCTTATTGTGCAGAAACAAAATAATTTTGAGGAAAGACAG--GAAAATGGGCTATAAATTTGCCCATGTCTTTGGTGAAGGCCTAACAAATCAACCAGGCTCAAGTCTGGATTACACTGC-TTTGCATATTGATGCATTCAAACTTTTGGCAACTTATGCTTTTCCTTGTTCTATGTTTTACTTTAG-----TTCATTTCCCTACACTCCTCACTAGAAAGGTAGAACTTATTTTTGTCATTAAGTAAAAAGATACAGAATGCCTCATAAGATCAAAATCAA-----AAGAAACATTCCATTTCTTATCCTTTTTGAGAGGATCAATTTTAACATATTTGTGTGTCAACTCATCAAGCCCACTTCATGGGAAGTTGATGAGATGAACATGTGTGTCAGACGCTGCACTACCATTAAC-TATTCTCAACTCCATCTCCCAAGGCGCTTCATGTAAAAATCAGGACTTTATGAGAAAACTTTAGGTTGGCTTCATTCAGCACCCCAGAAAAGGACATCGTCATCTTTCAGCCTGGGCCAGGATCTCTGAGAACATGCTGATCAGC
s HiC_scaffold_1 142333633 778 + 233722169 GACCATGCTGCCCAGGCAATTTTGAAGAACTAGAATATTTGGCACAGTGTTTGGAGTGGTGACACAGTTGCAAAAAAGTTAATTCCTTTTGACTTCTGCCAGTTAGTATTAAACTTATGAGGCATGAAATCATCTAATTCTCCATAATAGGTTTTCTATAGAGTTCCCAGTAGAAAACATTTATGCTTGAAACATATGTGCCTAAATCTCACAAACCACAGGCACATTTATTTACAAAGATACACATAGTCTTC---TTTCAGTgattagaaacaaaataatttttcagaaagaCAGGAGAAAATGGGCCATAAATTTGGCAATATTTTTTATGCAGGGCCAACAAATCAACTGAGTTAAAACATAGGGTGTATtacatttgcatatttatatatcCAAACATTTTA--------GCTTTTCCCTATTCTCTGTTTTActcaagttttctttattttctt---tttttcattagaGGGGCATGTTTAATTTTTGCCTTCAAATGGAAAGATACCAGATGCCTGACAGGATC--AGTCTATGATGAAGAATTATCCCATTTGATA----ATATGAAATGATCAGTTTTAACAT----------------ATCGAG----TTTCATGAAAAGCAGAGGAGATGA--ATGTCTATTGGACACTTAACTGTCACTaacttattttcaatattttttcacctGCTATTTCAGGGTATTGCTGTCTTCCTCTGGCTACATTCTAAGTTGAAATCATTTagattcaaagaaaagtatatcACTACATTTTAGGCCACATCATGATCTTGTAAAATATTCTGACCAAC

a score=25594
s chr3           155289578 899 + 160039680 AGAGAAAATTAATTTA-AGTCTTGACTC--CTTAAATTCCAAGAGACAACAGTACATGGAATAGTTTTAGAAATACACTTGAAGACGTTACCAGGT---GTTCCTCCTCTTGA------GCTGATCTTCAGTGTT----TAGATTTGGTTTT-TATAATTTTCCCACTTCTT-------------TCTCAAAGCT---GTGTTCTTTGTGAGAATGACAAAGGCTGGTGCACTGTTCACAGTACA----AGGTTTCTAGTGAGTTGTTTGCTGTGTGAAATTCTGCACAAGGAATCAAAGAGTAACCCCAATAATACAACCCTACTAGAAACTGGCAAGATGACTAAAAATAAAAGACTTGGCATT-ATTTCTAGTTTCTCTGCTTATCAGTTGGAAGGGAGCCCCATTATCCATCTTTACCAAAGAGATGTTCAAGGTTTAACAAAGAGAGTAATTTAAAACAAAACTGGAATTTGAAAGAAATGGTAATCAATTTTATTAGATTACAGAGTGAGGTTCATTGTGAGGCTACTTTTCTTCCTGTTTATTGAAGTTGCATCGCCAAATGATGACCCAATTATATCTCATTTGCCAGATGGCTAATTGT----AGGAAGAACAAAGAGATTTGCA---------------------GTTATTACAAATATTGCCTTTTGATAGTAAAACATTTTCTAGAATTACTAATTTATCTTTGAGAATAACAATTTTCACCTCATAACTTTAAGAACTTCTGAGTATTTCTGACATTAAGAAAGTTATTCCAAAAATATGACAGAATTATAATGACTTAAAAAGCATAATACTGATGAAATAATCCGCGATTTGTAATAGTGTATTTTTATTTTTACTGTTTAACCTCATTTTGTTTCAAGAATC--TGTCATTTAATGTGACCT-CCAGATACCTTCCCAACTGTGTCTTCTCTTCATTATTTTCTTTCTT
s HiC_scaffold_1 142337144 938 + 233722169 AAATAAAATTGCTTTAGAGTCTTATTTCTACTTGAATTCCTATAG------TTACTTGGCAATGTTCTTGAAA--CCAGTGAAGA-GTTTCTGGACTACGTTTATTCTCCAGAAAATTTGgtgattttgagttttattttaaaattacttttatatttttttctcactttctcaTAATGCATTTATCTAAGGGTTTACATGTTTTCTTCATGGCTGATAATCGTCAATGTAGTG---ATGATACATGATAGGTATCcagtaaatt-tttgttgaataaattGTGTCAGAAGGTATCAGAGAGTT-TATAAATAATATGGCCTGTTTAGAAATAGGCAGTATGACCCAGGATAAATTACTTGGCATTTATTTTCAGTTACCATGTCTATCAACTTGGAAAATGCAGTGTTATTCATTTACACCAAAGAGATGTTGAAGGATTAACAAAGAGACTCATTAAAAACACAACTCAAGTGCAAGAGAAATGATAATGCATTATATTAGATTATAGAACTTGGCTCATTGTGTTATTACTATTCTTTTTGTCTATTGAAATCACATTGCCAAATGATGACCTAATTATAGCTCATTTGCCAGATGGCTAAttatgacaaggaaaaaaaaaaagatttgcagtTATTGTAGAAAGATTAATGGTTATTGTAGATATTGTCTTTTGATAGTAAAATGTTTTCCAGAATTAAAACTTATACCTTAAGTATGATGCTTCCCACTTTCAGATTTTAGAAACT--TGAGTATTTCTgactttagaaaatttattcTCAAATGATGG-GGAAAAAAGGTGATTCAAAAAA------GTTCAGAAAATAAT--GTAGTTTAAtgcaaagtatttttctttataatattgcACCAAATTTCATTCCAAGAAAAAGGGGGATAAAATATGACCTATCAGATATCTCCACcactgtgtcttctaatc--taacCTCTTACTT

a score=31891
s chr3           155291442  989 + 160039680 CATCCCAATATAGTCTTTATATGTCTTCACAAAACTGATGTTATAGCTTTTATAAAATATAGCACGTTTCCAAGAGTGAACCAGGGGCTGTACTTAGCTTATTTCCGTAGTAGACAAACATCTGGCTGAACTCTGGAGGTATCTGGATGTAGTCC--CAGTTCCTCCTATTTTTCACTATGAAAATGCCCCATTCTTAGACATACTATAGAGAGTCATTTGTCATTCTTCAATCAAATGACAACATGCAATTCCAGTAGAATTACACTTGGAAAAATATCTCATAAA----------------------------------AATTATAATATTGTATTCATAAATTACATT---------------------------------------AGGCATTGC---------------------------------------AACAAGA-AATTAAGAAAAGAAAAACAAAAC-------TGATCACCCATGCCCATTGAATTCATGCTTTATT----CAATGGACCAGGCTTTGTGTCTTTTCACTGTCTGAAAATG--ACATGAAGCACATGCCATTACATGTTTGTTGATCACAGGCAAAA--GCCTTGATGATCAAGTCACAATTTGCAGGTACTGATTGATGACCCATG-TGCTCACTTGCTATTCTTTTCACATTTCACCATACAGAAAAAGAAGCTGTCTTTAGCTTGTCCCACTCGTTAGGGTTCAACATTGATCTTATCTGGATTATGATGCAGCGCTGGATATCA-TCACCTCAATTGTGAAATGAATTGCTTAGTCACACATGTGATAATGAGTAGAATTGGCCTTCATAACCACTACTCTGCTGTTATCAATCAGCTATTTACATAATCACAGGGGAAACCATATCCTGATTCAGTGTGCGACAGAGTAACAAACAT-AAATTTAATTGCCCTACTAGGCACTGGAGTCATAATCTTTACACAACACTTAATGTTTTCATTACTTACCAATTCACTTATAATTATGCTGCACTCACAGAAGTGAAGCGGCTAGCAAACAGTCCATCCTTCATTTTGGCTTATGCAAAGATAAACAAATAGATGCTAAATATGTGGGAGTGAATACATTAGCTCA
s HiC_scaffold_1 142338368 1083 + 233722169 CAGTCCAACACAGAtctgatattttttattctatctactttttcacattttataaaatataaaat-tttcaaaaagtaattttGGTATTCTGCTTTGCTCATTCCTG----------------------GCTATCGAGTAATCCAGATGCAATTCAACAAGTTCTCTGATTTGTCATTATCTGCTTGCTTCATTCCTAG---TactctttttgtcattttgtctCTCTTGAGTCAAATGTAAAGATAAAA-----GCTgaactgtgattttaaaa-tgtctgataaagtttggggatttagctcagttgcataagcacctgacttgcaagcaggcggtcgtgagttccatccccagtaccgggggagggggggggagtttttttttaaaaaggcattattCACCTACCAAAATATTTGCTACTGTAAGGAAAGTTAATAACAGAACAActaagcaaaaagacaaaaaacctcAACTTAATGATATGTATCACTTGAATTCATCCTGCATTTGTACAATATATTGCCCTTTGcatatttttactttctggaAATGTTGCTTATATTTCATGTTCTTATTTGTTTGACGGTCTCAGGCAAAAATGCACTGGAAATCATGTTATAACTTACGAGCACTAAG----GCTCCATGATGTTCATTTCTTATTCCTCTCACAGTTCGATGAATTAGAAAAATAGTAGT---TCGCATATTGCAATTACTAGAATCCCACATTGATCTCATCTGTACCATATTGTAGTGTTTGTTACCAATCACCTTAATTGTAGAATGAATTGCTTAGTCACATATTTAATAATGAGTAGAATTGGCCTTCATAACCAGTTCTCTATTGTTATCAATCAGCTATTTACATAATCACAGGGGAAACCGTATCATTATTCACTGTGAGACAGAGTAACTAACATCAAATTTAATTGTCCTACTAGGCACTAGAGTCATAATCTTTACACAACACTTAATGTTTTCATTACTTACTAATTCACTTATAATTATCCTATACTTGCAAAAGTTAAGCAGCTAGCAAACAGTAGATCTTTCAGTGCTATTTATACAGAGATAAACAAATAGATGTAAAATAAGCTAGAGTGAATATATTAACTCA

a score=25122
s chr3           155293704 1504 + 160039680 agctagaggagggggggtgaggaggaggaATTTCTGTATACATGCTGGTCCTTGTTTCTGCTGCTTTCTAATCAGAACAAAATGCCTGCACTT-TTCTGCTGCAGGGAGAAAGTTGTTTGCTTGTCAGAAGATGCAGCATAGTAATTATGCCACCTACCTATTTGTGTGTAAAGAGACATTTTTC----TGTGACTTTCACAGTTTAAAATGCATGCATCTTGT-GTTTTGTACTTATCTGACCTCTACCTCCTCTTTTG-------GCCACGAA-----AACAGAGAGTCTCTGACTTTTTA----------GAGCC---ATCA-----TCTTTATAAGG-----AGCAATCCTGACTTTCT-ATTGGGTAATGAAGCTTCATTTGAAAAGTGTTACCTTCACATCAGAACGGGCTTAGATAACGGCCTTAGAATCAACTGCTCCTTGTCTTTGTTATTGA-CAAGGCAATTCCCCTTCTAAGTGGAGATGCAATAGTACAATTTTTTCCTCCTTCATTCAGGTTTTACCTTTTTCATCCATTCTACTACCTGG--CAATCAGTATCTCAGATAGGATTATTGAAGAATTAGCTGGTTCATTTAGTATA------AATATTTCATAATCACACAACATGGTAACTGTATGTGTCAGCTATCTAAGGTGACATGCTGTAATTGCAACCATAAAAAGCTACAGAGAACAATTTTTGCTGGATTTGTCAGTCCATTTAAATCAAGTCAGTGACTGTTTTGCTGGATTCTAACTCTCAGCTGAAGACTTT-CATTCCATTATATTCATAATTATTTGTTTTAAAAGGCTTTTACTTCTTGCTTAA-GTACAAAGAATCACATTAAAATGGCAAGACTAAGATAATTCAGCCCTTTAAATATTATCTTTAAATGGGAATAAAATCTTATTGGCTTTATATTTATATCTTACTCTAGATGTTGAGTTGGATTGAGCAATGGTTTTTTAGATGTATATTAAATGGGAATAAAATCTTATTGGCTTTATATGTATATCTTACTCTAGATGTTGAGTTGGATTGAGCAATGGTTTTTTAGATGTATATTAGGATAGGAAGCATGGAACGGTTTATTGAGATCTA---TTGCCTTTGAAGTCACCTTGTAATCACTATCTACT----------ATGGGGGCAGATTAAGTAATTAACAAGCTATGCATTGAGCATCACATTGTTCATACAGAGAAGAGCTA---------TTTTATTTAAGAGATTTTTGAAGT-ATGTTCCTTAAAGAAAATAAAATATGAGCAATGAATGTAGAGTGTTACTGAACACATTTATCCTAATGATGTCAATGATCGTTTGTTGGAGCCACTTATAGGTCACATTTACCACATAGACACCTCTGTT----TTGTTTCTCAATTTTCTCTCTAAGCA---GTAGCTTTTCTGGTGAAATTGAATGCTGCCTTCTTCA-TCTCTGTTTCCCCTTGTTCTCCTAGTTCATGAAGAATCT---TGGGATTCTGCTCCCTTTCCTATGCACAATTTGTCATAAAGGCATTTGGGGAATTTTTCTACTGCTCTAGTTGACCATGTAC
s HiC_scaffold_1 142342134 1468 + 233722169 AGCCAGGGGCAGGTGTGTGGTTATGAA-AACACATGTATATGTGCC---------TCCTGTTTGGTTTAAACTAGAACAAAGTTGCTCTACTTCTTAAGCTATATCCAGCAAACCAACATCTTATCAGTAGATACAGC-TAGCCACTAATCC-CCAACTTGATTGTACATAGGGAGATATATTTTGTCACGTGACTTAGAATCATTAAAACACATACAACCTGGAGCATTCTCCTTTTCTGACTCCCacc-actcttttgcatttccacCCTAAATGGCTAAAACATACCTTCCTACTTCTTAATACAAAGAGGAGGCTTAATCACTTGCTCTTTGTATTGCTCATAATAAGCCCCACTTCCTCATTACCTACTAAAGTTTATTTGCAAATGCACTACCTTTGTGTCTCAATGAGCTCAG-TAGTTGTCTGGGAATCAACA---CTTTACATTCACCTTTGAATAATTgaattctctcattctgtagaACTGGAATGATCCCTTTCTGTACCCCTTTGACCCAATTGTTTCCAGTTCCTTCAT-CTACCACATAGAGTGATCAGTATCTCATATGAGACTGTTAAAAAGTTAG-------ACACAGTATACATGTCAATGTTCTATAATCCTTCAGCTTGGTAATTATAATTCCTGAATACCTAGAGACATGTGCCGTCCATACAAATGTAAAAAGTGATGTCTAGAAATTTCACTTGAACTCATTATCCAGCTATAATCAAATCAGTAAAAATTTTACTAGATTCTAACTCCTAACTGTAGAATTTGCAGCACAATATTCTCTTGACCATTTACATAAAAGGGCTTTTATTTGTTGCCTAAAGTAAAAGGAGTCAGATTAAAGTAGTTAGGTTAAGGTAATTTAACACTGCAAATATATTCGTCAAACAGGAACAAAATCCTGCTGGTTTGATACTCGCATCTCGCACTACTTTTTGAATTGAAGTTAGC---------------------------------------------------------------------------------------CATTTGTTCTTCAGATGTACTT-----TATGAAATACCAAACAACTTATTGAACGCTAACTCTTCCTTTTAAGTTATTCCCTAATCATTATTCACTGTATGAAGAAGTAAGGCAAGGTTAAGTAATGCAAAAGTAAGGCTTTGAGAAATGCATAGTTCAAAAGAAGCAGAActactttttgtgttttatgtgAAGGATGCCTAAAATAatattccttaa--aaaataaaatcctcacTAGAAGTATAGACAGTTACTGGGGACCTTTATTCTAAATCTTCTGAT-ATTTCTCCCCACAACTACTTATCAGCTACTTTTACCATGCTGATACTTTCGTTAATCTACTTTTCCTAGTCACTCTCAGAGCAGTGGTAGTTAATTTGGTCAAATTAAAAAATGCTCTCTTTACCCTCTATGTCTCCTAGTATTCCTAGTTTGTTTAGAACATTGCTGAGATTGTTTAACCACTTCAATATTCCACTTGTCATAAaagcattttgagaaatattttc---ctttggaTGACTACATAC

a score=72044
s chr3           155297897 4806 + 160039680 [encoded data, 5176 characters]
s HiC_scaffold_1 142346088 4565 + 233722169 [encoded data, 5176 characters]

a score=79522
s chr3           155319083 2630 + 160039680 TTCTCATTGATATTTTCCTTCTCTTCTCTGTTCTCTCTTCTTTCAGTGGGTGGCACTGTCTTTTGTCCAGTTTCCCAGTATGAAAATGTGCACACCTTATGGTC---------ATTTTCATACAATGTGAACTATCATTTGTGTCAGCTCTACTGCCAAACAGCTGCCCATTAAACCCATTCAAGGTTACATGGAAAGCTCATAAAA---ACAGGCACCATTCAATATGA-TATATGGCAGGAAAATATAGTTTATATTCTAGAATTTTTAA-GGGAAGTAGCATGCATAATTTCCTGAGGATTGCCTAAAGGTGGAGAGCCCAAGTAGTGATGAGAGGAACTGTCCTCAAGGAAGCACTACA--GTCCCTGTACAAAAAACT-GTAATCCAGGGTCACAAAGACACAGCAGGGAACTGGGAAAAATATA-ATAAAGTATCAAGATAAGAGAGACTGGTGAGAAATAAGACTGGTAGCAAGAACCAAGGCCAAGGCCAACTCATATAGGACTTGATGTATTTTATCAAGAGTTTTTTTTTTCCTAAATTAACTTTTTAAGGTTTTATGTCTATAGTGAATTTATATTGGGCTTTAACAAG-AGTGTGAGATGACCTGGTAGTATGC-------------CATATGATTTCAATATGACATGAGCAGCCTCATTTT--------CTGGTGTTATTTTCATATATGCAGACTCCTGTACCCCTATACTTCACACAGAAACATGACTCAGA---TCCTCAATTTTCTCATCTGTTCCCTGTTATCCCTGCATCTTCTATTATACCCTTTTGAAACAACTCCCCATTTCACCAAACAGCAGGACTCTGGTAACACAAATGCCCTT--CTAATGTAT----TTTTCCCTTAGAATGATCATTCCGGTTCTTTGTAGAAGACAT--TATTCTGAATGTTGCCA-TTCTGTGTATAG---TCACATAGATTTGGTAGATCTTTTTCCAAAGATTACTCTTTTTTTTTTTTTCAATTCACAATATACAGTAAAAGTAGATGGCTATTTCAAGGTCTTATCACCTCTAattaaaaggttataagaaaaattctattagcaatttgagg-cttcattctggtttcacaaatgatgaatggttctctttgatagcatcttttaaaagatgtagctgtgtgaaaaatcacccaagaggtgaact-tgttcaatttatcattaacttg------cttccacagatgcttgctgggaatcattgtaacctgcttaatttctctgtgtgtaatgggaagcaaatagcctcaattagcgtactgattagaaacttctttaatgagttccagtagttctcctcattattgctgatacAGTACACTGAATTCCGGGAGTCGGGATTTGAACATTATTAGAACATAAAACCTAAACCATTATAAAACTGTTTTCCAATGG--TATTTGCTGTTTACTGGTTACTTCTGTCTTGTATGTGTGTGTAAATAG----------AGAACCACCTGGGAATGGAT---TCACACATGTGGACTTTGTCAACTGGTCTTTAGCTGTTATAAATCAT---ACGTGATGGGGCATGGCTGGGCTATGTCTCAGGAGCTGGAGGATTGCAACCTGTGCTAATGACATGGCTAATACAATGGATTGAGTTTGGTGGTAGCTTCATTGAGAGCTTTTGA---------------TGAGTAAAT-AACAATATTATGCGGGAAGAT--TCATTGGTGTACCTCAT------GGGGCATTTCAAAAGTAGGGACTGGGTAGCTTAAGAAAAGGAAAGAGTCACATA------------------------------CAAAGTTATATTTTTTCTAAAGTGGTAAC--TTAGTACCTACTCTTCCAGTAACACTAGGAAAACATATTGTTCCTCTTTGTTCCACTCTGTCTTTTCTTATTGTAAACAAGAGGGCTTCAGAACCACAGAAGTTCTGTAGTAGTGCAGGTACCTGGGCAATACCAATGGTGATTGCTGCTGTTGAAAATGTTGAACAGGAATGTAGAAATTGTGGTCAAAGCATCATGCCTTTT----CTTATGGAACGTGGCAACCCTATTTTCTATTGTTT-TGTTAGAGGCCTTTACTGTTATTGTTGGAATGAGGGAGATCAAGTGAAGGCTAG--TCTCTTGCAAATGCCTCTTAGAAAACTTCTTACCAG--GAAGGCTCTCC-TTTCTGCCACGTTTTATGGTGACATAAAGTTTCATGGCATTTATGGAAACACATGTCATGAAGCAGATGGCTTGTTAGCCTGTTTTAGTAAGCTCATTCATATCCATACAATATTAAAACTTTTTCAAGTTCATGAATTATAAAAGAACACTAGATATGGGGTAGTCCAAA-GAGCCCTTTAATTATTAAAATTAGATATGCCAAAGGATTCAAACCTGAGTGGAAATTAAAAGTGGGCCTTGAATCAAGATAAGGAGGCTGAATTGGATTCTTTCGAAATTACTTCTCTTCGGGAGGTGCCGGATTTCAGCAAGTATCATAAGTACTAATTCAGTTTTATCT-TTATTACTTCCTGACACAAAGCCTTTGTGAGAGCTAAGCTTGTATTATAGAGACCGCTGACTTC-CTAGAAGCATGGAACAAGCTCCTTTAATAGGGTGCCCTCACACTACTGTCTCTGTATCTCTATATATGGGCAAA--------------TGATTTTTGATG-CTCAGGAACCTACCTAGATGTCCATACCTGCCTCAGACAAAACTGCCTTTAAGAGCACTG
s HiC_scaffold_1 142359913 2663 + 233722169 tcctctttaattttcttcttcac----CCACCCTTTCTTGTCTTGGAGAATGGCACCATTCTTCTGCCAGTTGCCCA-TCTAGAAACTTGCATACTGTGTTCTCCTTCCATCAATTTTCATACA----GAGCTATTAATCTCACCAATTTTGCTACTG----TTTCTCCATGAAATCCATTTAGAATTATGTAAAAAGCCTACAAAAGTTACAGGC----TTCTAAACAAGTGCATGATGTGAAA-TCTAACTTACATGCTAGAGTTCACAAAGGGGAATGGCATG--TAAGTAACTAAGGATTATCCAGTGA----------GAACAGTGATGGAATGGGAAGCCCTCTAGGAGGAAACAAAAGGATGATATGCAAAGAACTTGGAGTCTAGGAGGACCAAGGCATCCTTAAgaatcagaataaataaatataaagtttgaagataaagatggaatgagGTAGACGGATCTTCTAGAGAAA------GTCAAGGCTAATTCATGTAGGCTTTTGTGTCTTCTATCAAGAATTTTTC-------ACAGTAGCTTAAGAA----------CAAAGAAGAGCTACCAGTAAGTCCTAAGTGGTAAAGTGACAGGATTTAATGGTATCCATTCATTGGAGGGTATTTGATTTCA------------CGGCTTCATTTTTATGCACACATGCATTGTCTTCGCACAAAcaa---catgcaca-------tgcacacaattCAGTAACTCAAAATCCCTTTGATTTTGCCATT------ATGTTATCCCTCTCTTTTCCATTATGTTGCCCTAAATGACTTGCCTGCTTCCCCAGAC--TAGGACTGTGGTAAAAGCAATGTTCTTAACAAATACAAATGATTCTTCCTTGAAAGGACAATTTTGATTTATGCCAGAAGACGTACGACTCTCAGAGTTATTAGCTGTCTTTATAAATTTCACATAGATTTGTAGTATTTCTTCCCACagg--atcattatttttttttccaattcacaCTATGTGGTGGAAGTAGGTAGCTATTTTAAGGTCTGATCACCTCTAATTAAAAGATTACAAGAAAAATTCTATTAGTGTTATGGGAATTTCATTCTGATATGACAAATAATAAACAGTTTTCTTTGATAGCATGTTTTTAGAG--GCAGCTGGGTGAAAAACCAACCACAAAGGGAgctgtattttatttatcattaattttgacATCCTTCCACAGATGTTTTCTGGGAACCATTGTAACCTGCTTAATTTGTCTCCATATAATGGGAAGCAGATAGCCTCAATTAATGTACTGATTAGTAAGTTCTTTAATGAGTTTCAGTAGTTTTACTCATTATTGCTGATACAGTACACTGAGTCCGGGAAGCTGGCATCTGAGCGTTATTAGCACATAAAACCTGAACCATTGCAGAACTGCTTTTCTATGGCATATTTGTTGTTcactggttacttttctcttgtgtgtatgtgtaaataGCAGAGACATGGAGACCACATGGAACTGAATCTGTTAGATGTGTAAAGTCTGCAAATTTGTTTTTAGTCCCTGTGAGCCACCTCACATGGCGAAG--TGGCTGTGGCAAAATTTGACAGCTACAGAATCCTAATTTATTCTAAAGACATGGTTGACACCAGGAATGAAAGTAGAGTGAAGCCTCATTAAATGGCTTTGAACATGTAGACTATGCTGAGTTCATTGACGTTCTCTTTCTAGAAAACAGGAAGTAAAGTATTTCATCCTTCAGGAATCTTTCAGAATTA----------ATCTTAATTAGAATATCAAGTCCCAAAGACACTATTAGAATgttacaaataaatgaacaaagttGGCATTACCctgaaaagagaataataaacaaCCA-TCATTCAACTTTTCTAAGAAAAGAGCTAAGTCTC--TTCTTCAGCTTAGTGTGTTAGTCTTCTAAACAAGAGGATTTAAGACCTGTGGGATCTTCTAAGCAGCACAGGCACCTGG---------ATAGTTATAGcacttttt-------tggaaaagaaatagTGAAACTGTGGTCAAAGCatcaggttttttttctcttatgaaaGTTGATGGCca-attttcttcagtttctattAGAGGCATTTATTGTTATAGCTGCAATGTGGAAGATCAAGCAAAGACCAGAGTACTCCGCAAATGCCTGTCAGACACTTTTCTTCCAGAGGAAGGCCCTTCATTGCTGCCATGTTT-ATGGTGACATAAAGTTTCATGACATTTATGGAAGTGCGTGTCAGGAAGCAAATGGCTTGTTAGCCTGTTTCAGGAAGCTCACTCATATCCATACAGTATTAAAACTTTCCCA-GTTCATGAATTATAAAAGATTGCTAAATGCGGTGTAGTCCAAAAGAgtcttttaattattaaaattagatATGCCAAAGGATTCAAACCTGAGTGGAAATTAAAGATGGGCTTTGAATCAAGATAAGGATGCTGAATTTGATTCATGTGAAATTACTTCTCTTCAGGAGGTACTGGGTTTCTACTAGTATTACAAGTACTAATTCAGTTTTATCTCTTATTACTTCCTGACAGAAAGCTTTTGTGAGAGCTCAACTTGTATTACAACGACTGCTCAGTTCTCTGGAAGCATGAAACGTATGCTCTTAACTGGGTGCCTTTGTGCATCC-------TAACCTTGTGAATGGAAAAGCTTTCTTAATTCCCTGATATTTAAAATCTCAAAAACCTATC----TGTGAGGACCCAACTTAAGCCAAACTTCCTGGAAGGATACTG

a score=40204
s chr3           155323163 2636 + 160039680 CTCTCTTTAAGCCTTTAATTCTGATGTAGTTTTTTTTTCTCTTCATCTCCTTTGGCACCTGGTTCTAATTTTATTATTACTGTTGTTCTTATTTACACGAGTGATGACTTTATTGTAACTGGCAGAGCTTCAGAGATGTAGTTACTTATTG-----Tcagaaacttattgtc----acttatactgtagacattatgctagaccctaaagatataaagagtagtaagagacagcctgcccctcaaggagctcacagcatcatgaa--ttagattgaAGTACTTAAAGAGTTAGAACAGTGAAAATAAAAACAAAATCAGAGCCTTCAGCT------------------------AGGAGAAGTCCCTCTGAACTGTGGGCAAGCCAGGGCTGTGTGTAGCTT-TGTCCTGATTTTTATGAAAGCTGTTAGTTCTCCTCTTTCGCTTCCTCCCTCCCTCATCTGCTTATTTTTAAGG------TTGCTATTTATGATTTTGTTTGCATGTGAGATG----AAAGTATGA--GGCAGAGCATGTGTGGAGGAGTGA--AGGATGGCAGACATCCTGTCAGACTCAGTTTTCTTT--------TACTA----TGGAACTGAACTCAAACCC--------------------------------------TCAAACTTTGACATCAAGACTTTAGCTGTATCATGAT--GCTTGCC------------TTCTTTGAAAGTTATCAATAG-ACATTCCCAGAGTGTGG---ATGGATGACGGAAGAGTTAGAAAAA-ATGAAAATATTG--TGCCTCCATATGGTACTTCAGGTTCTTATTTCTCAAATGGAAGAATATTAAGATATGTTTCTGAAATAGTTTAATGAATATATTTGTTTCTCTGGTTAGTATCTTAAAATGAACTTTTATTACTTTCACAGATGGATCTCTCGAATTCCAGTAATGAAATGACACATGTATACAGCTTAAAA-CAGCAACTACCAGAGATTGCTGGTATGATGA----AGGAAATGGAGGGAAAGAGACGAAAAGATTTCAAAGTGCATGTATGAGGGGAAAATAAACCTAGACAGTCAACATATAAAACCAGGGCTATGACCACAACTCTACATTATACATT-AAGACATGCTGCATACTCACCATGAAAGGGAAAACCACATCTGAAGATAGGTTTAGTGTAGATATCAACCTGCCAATCATTTCACTGTGTGCATCAACATATGTGGGTAAAACTGACACTCAGTTTCTTGCCTAGTATGTACCAAAAAAAGGGTTCAACCACCAGTTCAGTAGAATGAGAAAGTAAATAAAGAGATACTGAGAGCACCATACTTTACAAGTTAAATGTACACAATGGAAT-TAAAGAATGTTGACTCTGAG-ACTTAGCTCCACA---TTAACCAAAAGCTTTGTAAGTGTCATTGTGCCTCTGCTGCCTTGGTTGTAGCTTCTACCAAACAAAATGATTGGGATTCTAGGGCCACAGGAGTTTATTTCAGCCTTCCCATTCT-CTGTTGCTTGAGTTTTAATTCTGTGAGTACCATATAATAAACCTAAATAAATGTTACATACATATTTAAACATGCATACAGA--CAGACAGACATACCTGAATAAAATTTTATTTATTCAGGTAGATTTTTTGTGTACTTTCCTTAATGCCTCCTGAAATGAGATATTAATATCATGGTGTCTAAAATATCAGCAAAAATATTCTGAGGATGAGTGTTCTCTTCTCACAAA---TGCTAGAAATACAGAAAAGAGAAAGTGCAATTTGATCTCTACATCTTGGCAGACAGTAGTTGGAGTTGAT----TTGAAAGTTCACTATTGGCCAATTATCTATAGCTAGTATGTTTAGAATAGGCATTCTTGGTCACAGATTTTACTTAAAATAATGTAGAAAAGGTCATACTATTTAAATCAAATCATCATTCATTTATTAAAAG-TGACATTTTCCAATTAAAAGTAGGGAGATTAAAGCATGCTTTTCTACTTTAACTTGCTTGTTTTCAAAACCACGATTTGATTGTGGATGAACAATGCAGC-----------------------TCAGTGCTGTTCATGCAGGTGCAG------------------ATATCCTCTCCTATT----------ACCAATCTCCAGCTCTACCCATCTAAATTATAGCCTACTCCTAGGTGATCTCTTGTAATTAACAATCATGAAGAATATCATGGCACATTTATGA-ATTTTAAAAAGTGTCCTTCTAAAAATTGACCGAGAAAATG--ACATTGTTCTTTACCATAAAATCAAA-GGTTGTCCAGTCCCCTTCACATGCTGACCTCCTAGAGTCAAACCAATTACTAGCCAATTTTTGATAATGAGCaatcatataatcataagattggaagggaccttgggaggacatatgattcacccttccataccagtgTGTGACGTCGTAAAGCAGTCTCAGAAAGCAATTCTGTACCTCTTTCCTTGGCATTTTTAAAGCAAATACCCGCCATGTCCTGAcctgtgatccacaggggtaacttgtgtggtggtgagt-cttcatcagctccatcttcttcctagtcacactacctacttctc-ctggtgcctct-tgaatcagctagcaaatgtact--ttgcattgggattcttatctctaggttcatttcaggTTAAATCATTTAGGAGGTTCTGTTTCCACTCTCTAACAGAAGCAGAAGTGATCACCCGAATGAAGAATGTGTCCAATTGGTCAAATTAAACTATAATACCATGCTAAACTAGGTATCCTACTTGATATACTGT
s HiC_scaffold_1 142362877 2593 + 233722169 CTTTTTCTTAGCCTTTACTTCTGATGCAaattttctgt---tccatttctTTTAATACCTGGACCTATCTTTTTTACT---------CTTATTTCCATAGTGAAAGTTTTTATTGCAACTCCTAGCTCCCTCCGAATCT---CACTCATTGGCTAATCTGACATTTATTGTCTTTTACATAGATAGGAGACATTAAGCTAGACAATAAAGGTATAAAGATTAATAAGATGCAGCAGGCATTGAAAACAACTCACAACCGTATGAAAGTGTACTTGGAGTACTTAAACAATTACAACACAGAAAATTAAAGCACATTCATAGATCACAGTTTTGTACTCTTTTCTGGAGCTggtgagaagaaataaatttctatgcaAGACCAGTGAGTGCTTTTTGTGGCttgttttctagattttat-------------------------tttcttgtctcaatcat----ttctttttaaagcaaattttaataACTATACTCCTCTATTCAGACAAGATGCCAGGAAATATTATAGATAATGCAAATGTAGTCACACCACTGGTAttgcaaatat----------ttcattttctttattaaaaatattaatattgtaACCTACTTCTAAGTTAATTGTGAgaagattcctagaaaaatatttcttttgtgtaaaACTGTAAAAACAACTCTTGGGTTA-ACAATGACCATCTTGCCCTTaataatttcttccttgaaatgTATCTACAATAGATTCATGGGATGATGTTTATAGATAAAGGGAGAGTCGGAAGAagatcaaaatgttaattttcactgtttcttactgaacattattatttttccattgagaTAGATTTATGACATGTTTCCAAAACAGTTTAAC--ATATAGTTTTTCCCCCGGTAAGTA-CTGAGCAAAAAATACCAGCTCCATAACAAGTTAGACACATGATTTc--atattcaaa--atattcaaatagagCATAAAAACAGGGGTTACCATGCAT--CAGGT-TGATGAGGAGAGGAAATAGGGAGATGTAGGTAAAAGTGCatcaaattgaaaataaagtatgaaaa-agtCTTAAGATTTCAA---ATAAGATGAGTATGATGGCAATAATAGTATATTTGGTAgtgaaaatttgctaaaaattgACCAT---------------------AGGTACTCTTCCCATAGAAG--------------ATCTGACTATGCAAAATGATAAGT-------------ACACTGACTTACTTGACTATGGTA---------------------ACTATTTCATT-----------GTAGGTATCAAAACATTT-----------CTGAACAATTGAAGTATCTACAATAAAGTGTAATTAATTCTAAATCAGAATACTTAGCACTACAAAATTGGTTATAA-CACTGAACCTCTCCTAGGACATTTTCAGCACTGATAATCTcttgaacaaaatgaaaagattgaACTAGAGGAGTCATGAAGATCTTTACCAGCTTCCACAACATATTGCTGCATG--TTTTAATTCTA-------------------------GAATGTTCTGCACATG------CATGAATACAAAGTTAGATAGATATATA-----AGGCTTTTATTAATTAAGATGACTTCTCTGTG-GTCTTCTCTGATCCCACTTAAAATAGGAACTTTATTTCATTACGT------------------TATTCTAAGGGTAAATATTCTGttcctttaaaaattgttaagactatttaaaaaaaac-------tatgatcTCTGTATATTGGAAGAGAGTAATTAG-GCTGATCACTTTAAAATTTCACAGTTGGCTAATTAGTTATCGCTAGTCcatttaaaatatgcattcttGGTGActaatttcttgtaaaattacaTTCGAAAAGTCACATAATTTaaatcagatgcccatttgtttGTAATAGGACgattttttccaattaaaatgaggtaaagtga----tttttttcctctcaag-----tCATTTCTAAAGCCAATATCTGATTATGCATCAAAGATGTAAAGtgtttaaaagaagataacagaaTCTGTACTATCCACGCATGTACAGTATTCAGGATCTGTCATGGGAGCCTTTTCCATTTCCATCATTACCCAAGCCCCATCCCTTCCCATCAAGCTTTTAGCACGCTTCCAGGTGAAAGCTCTTAATGAGCAATCATAAAGATTGTCATTaaacatttataacatttttgaaaatgtccTTTTAGATCTTGACTGGGGAAGAGCTGCATTGTTCTTTACTAGCAAATCAAAAGGTTGTGCAGTCCCCTTCACATGCTGACCTCTCTGAGTCAAACCAATTACCAGCCAATTTTTGATAATGAGCAATCATATAATCATAAGATTGGGAGAGACCTTGAGAGGGCATGTGGTTCACAGTACCATACTAGTTTGGGCTGCATTGAACTCAGCGGAGAAAGTAATTCACTACCCTCTCCTTTGACATTTCTGAATAAAGGATCCAGCCTCTGGAGTCCTGTTACCCACAGTAGTAAT---GATGCTATTGCTTCCTTTATtaactttcttctcttccttgttttatt-tctacACCTCATTGATATTTTTCTGGATCatctcttaaataaaatacttaCGTTCCAATTCTCATTTCAAGGGCTACATCAGGGGAATTCATTTAATATGCCTTCCTTATGGTCTTTAATGAAGGAAGAACTTATCAATTCAATAAGGAAACCTTTAGATTGTTTAAGT-------TAATATTCATCAAACCTGGATCTCTTGATTGGAATATTGT

a score=43868
s chr3           155328709 1601 + 160039680 AGTTAAGAATAAAATTGACTTCACCATAACTTCTGTAACCATGCAGATTTCTTGAGTTTTTCTCAGGCTTGTTGAGTGTCCAAGCTTAACTTTAAG----TTTATTTATTAATGTTCCTATACTGAA-----GTCTCACCATATATGATTGACTTTGGGATTACATATGCTAGGGATATCCATGATCTGTAAGAATGGATT-AGAATCAGAGCATCCTCACTAATCCTCCTTCATC-----TTTGGATTACAGTGAAAATAATATT------GATGAGAGATACCAGTAATCACTCACA---GGCAA-------CAGCAGCTTTGCTGGATTTCTCCTAATCATTTAAAAGATTGATTCTCACAGTCATGATTTCAGAAGTAGTGAAGGGTGTCTTCAGAGTTCCCGGGCAAAGCCTCCATCATTAGGTAGACAGATAACCACAAGGTCAGAATTTA---------------AATACAAGGAAGTTCTATACCTATGATAAGATTTAAAATAACTAA--CCATGTGATTATGCATTATGGCCATGGATTAAACACTTAAGGATTTTTAAGTGAAGATGTGAAACATGGAATGTTTGGCAATCTTGACACTTTTATAACTCATTGAA----ACCTGAAAAAGTGCCCATTGACCTACTCCTTGGGTGCCCTGCTGCATAAACCTGACTGTGCAAGCCAGTGTCTCACCACATAGCAACTTT-------------------GTCACAGGGTAGAGAGCAGACGTGTCTTGGTGTGGGATGGTGGCATTTTACCTGAGAGAGCA------CTGTCTGCGTAGAACCACAGGAATTAGATATTACATTAACCCCTCATAGGTCTATGGTATGGGAATAGACACAGCATGAGGGATGTAGAAATGGATCTGCCTACAGTGA-----------------------GGACATTTTGCCAATGATGCATGTAGCCCAGTGAGCATCTC------CCTTCTTTCTTCCTTTTGTAGAAAGTAGAGTTGCATAACGAAAATTTTGATACTGCTTATAACTATCATTTATT----CTTGTTATTGTTCTTCAACCTCAAAGGAAGGAAAAAGACTAGTTT--TCTGAAGGATTTACAGTTTTGGCATCACCATCTGGGATGGACTGTGG-ATCTCATAGAAAGCACAGTCATGGAAATTTTCCATGCT-GGGGTTGATT-GAGCTTGCCTATCTGGCCAGCGCCAATTTATTCTGTGGGCAATGTGTGTGAATCCCAAGACATTTGAGTTCTGTTGATCTGATAAGTACCAGACCACTTCTGGCTCTCTGGCACACCTGCTGACTCCCTGGTGTTGGCTTCCTGCTGCTCTGTCCATCTGTTAAGAATTTATTTACAAAATACACTAAAATGCAAACCACACCGGTATGGGATTTAGCTAGTTTTCCTCTGCCTAGGAAGTGGCATCCTGCCAGAAAACAATTTCCAATTGTTGCAGAACTTGAGTACAAGAAATTGAAAGGTTCCAGGGACTCTTATTCCTATTTGAAATCCCTCAGGCAAAATGGAAAGAAATAGTCTGTATTTCTAGACAGTGTAGGTAATGCTTACATTATACAAAGGTACAAAGTTTACTTCCAGGGCTTACTGAGGAGGGAGAACAAAACTGGTAATGAAGAACACACAGTTATCACACAAGGATCTCCCATGGCAAGTTCATAAGATTTT
s HiC_scaffold_1 142367920 1640 + 233722169 AGGTTGGATTAAATTTGAGTCCATT-TCCTTTTTGTAACCTTGAAGATTTTGTGATTGATTTCAAGATGTGATAAGGCTCCAAATCTAATTTTAATGAATCTTATTT-TACACATTCTCATCCTTGAAGCCTGTTTCATCAT--------GACTT---GATTTCATTTCCCAAGTATAACAATGATCCCAAAGAAAGGTTTTAAaatcagagccttcacactgaaactattttttcaatttttaatataaaagtgaaaatgataAGCATAAGAATGAAAGATACTAAAGAATCCTTACATTTGGTAATGTGTGCCAGTTGATTatctaaattttttaatgttatgttCTCAGTTAATTCTCAAAATCCTGATTTCAGAGTGTGAGAAGTTCAGCTCTGTGATCCCAGGGCCATTAC-CAATGATCTCATAGGTAGGTTACACCCAAGTCACAATTTATATCAGCCCATCTTGACTCCAAGGATTTACTATATCTATTACAAAACTCATAAAACTTGAAGCAATGTGATTACGCATT--------------------TAA--ATTTGCAAATGAAGCTGAGTT-CACGGAGATTTGGGAAAGTCTGACACATTAAAAGACCCCTGGGTCTGACCAGGACACGTGTGCAGCTCCCTATTCCT---GTACCTTGTG--------CTGGTGTTGCCAGCTATTAACTCATCAGATAACATCTACAGCATGATCCCAGACAGAGGTCACAAACTGCTGGGGAGACACAGTCAAGTGCAGGGAGGAAGCAGTTAA--TGAGAGAGTAATGTCTCTGTCTGAGCAGAGCAGCAGACATTCAA------ACTCACCTATTAGTGTTGTACATTGTGGGAGCCATGCCAGAGTT-GGCAAGCAGGAAGGGCTGAACCTATGGTGGAACTGAAATCTTTCACGTCCTTTGGGAGTTGTACCAATAATTCATACAGCACACTGATagtctctccctcccttcctccttacTTTTGTGGCAGGTGCCATTACATAATGAATTGTTTGATATTCCTTCTAATTATAATTTATCTCCCCTTCTTACTACACACCAatttgaaggaa--gaaaagcaCCAAATGGACCTCAAGGATTGATAGCTTTGGCATCACCATCTGGGAGGGACTTTGGTAGCTCACAGACAACGGAGTAATAGAAATTTTCCATGCTTAAGGTTGATTTGAATTTGCCTATCTGGTCAGTGCCAACTTATTCTGTGGGCAGCATGTGTAAATCCCAAGatatttcagttttgttaatCTGATCAGTGCCAGTCCATTTCTGGCTTTCCTGTCCACCTGCTGACTCCCTGGTGTTGGTTTCCTGCTGCTCTGTCCATCTGTTAagaatttatttacaaaatacacTAAAATGTAAACTGCACCAGTGTGGGACT----TAGTTTGCCCCTTTCCAGGAAGTGGCATCATGCCAGAGCACAGTTCCCAATGGTTACTAAGCTTGAGTACAAGAAATTGAAAGATACAGAAGA--CTTACTTTTATCTGAAATCCCTCAGGAAAAATGATGA----------GTGTTTCCACTTTGGGTATGTGATGCTTATACTACTTAAAGGGTTGAAGTCTATTTTCGGAGTGATCTGGAGAGAGGGCATTGGATTGGTAATGCAAAATCCATGGCTACAATAC-AGGCTCCCTCATGATTGGTTCATATGATTTT

a score=24001
s chr3           155339105 2039 + 160039680 CTTAACTTGAATGAATAAAATAGAAGTTACTACTATGTCCTCCTATGATGGCTGCACTTCCTATCACTTTTCTGCCTTTCTACAGCCATTTCTTGTTGTTTTCCATAATGTCTTCCACCTGGATATTGAACCTCACTCA-TGTCTAACCAATACTGGCTGTGGTAAATGACCCATTGAAAACATTGGCACTTCTACCTGTGGGGATG-GCAACTAATTTTGCTGCTTTTGACCTGATTCTGCCCCAGGCACCTGCAGGCTCTTCAAATTGCAGGTTGCCCTCTGTCTCTTTCTGCACCTGGG-AAAATCCACTTTGCCAAAGTCATTTAATGTCACAC--CCATTTGATTACTGAACAATTTGCTTAAGGAGAAGTTTGCTTAAAATGTTTCCAATGTTATCAGCACCTTGCTCCACCCCTTCCGGCCTTGCTCATCAGCTTCTCATCATGTGTCAACCTTGGCTTTTCACCAGATTCTGAAAGGCAGTGCCCAAGCTCCCCCTGATTCGTTTTTCTTATCTTCCCATGGGAAGATAGGCTGAGATTGGACACCCTCCAGCGCTGTGACTAGCTGGATTCCACCATCTGTGCTTACTGTGGAGTTTGACCACTCTCCTCATCAGAATGGAGTGA------GGAATGTCGTCAAGACTGC-------ATGT--GACCCAAGTCTTCCCAACACAGCACAGTGTCCAGGT-ACATGC--------ATCTTCTGA---GTTCATTTTGCAAACTCAGAAGAACTCTCCAGCTCTTATAACCACATGCAGCAACTCAGGCTTCTGTGTATCCTCTGGGATGAGCTTTGTGTGAACATCCTTTTATCAGGTTAGACTCTTTGCCACCCAAGTTTCCGGAGTTTCATTATAAATCAGGCTTTAAATGACTTTGGGTTCTATTTCATTTATTTGAtgtgtgtgtacatgtttgtgtaaacatgggtgtcaaagaacatt---tttatga--gttcattcttttatgccatgtcctaggtcctgggacttgaactttagac----aaaaggcttgtca---gtaagcatttgtacctgctgagacacctcatcagcccATAATTCAATTCATACTTTAATCAGTGTTGCTGTGTCTACATGACCAAAATCCATT--TTCCCTGAGAGCTATTTTTCTTTGTTTCATTTGCCCTGTATCCTGCCCATGACTATTTAATTtgtgtgtgtgtgagtgtgtgtgtgtTTAAAATGGAA---ACAG-----GGCTTGTAGAAAGTTTAAAATCAAATTTGAGTGT-----------TGAGTTGACAACCTGCGACTGCTGGGGGCCAGCTTGCCTCTC--CCATCAGACAGTGGAATAACACC-------AGA----------------------------------------------------CCATGTTGAGCTG-------AGAATATCTAACTTTGAAAGGCCAGCTTGCATTTCTCATCAGAGGCAGTGGAATAATGCCAGGCAGTCAGGCATTTTTGCCAAAGATCCACAGAATCACTTTTTTAGGAGTCTCTGTCAATAAACAGATGAGCAAGCATACAAACATGAACATGCTTGCATCAAAGCAGCACCATTATGTGGAGAAATTGA-GAACTCAACC-CTGGCCCTCTTACTCTTCAATCTATGCA--TCTGTCTACAGACACA------ATAGCCACCAAGGATTTTTGAGAGAGTTTTATTACTTGTGATTTTTAGAATCAGCTCTGATAGTGGTACACTTTAGTATTTTTTCATGGTGACGTGTAGTGATGTGTTATTAATGTCCTGTTACAGAATAAGAT-----GTTCTTCTATAGATTAGACAAAGAATTCAAACATTCCATGTCAAACATGGAGAGAAAATCC--ATCTCCAAGTGGCAGATGCA--TGATGGTTGTATCTGCCCATAACCCTGGGATTTCATCAGATGTGTCAGGCTATGTTTCAGGAACATGTTTTAGGGACA-----GATAAAGATGGAAATCTGTGGTAATTGTATTTTTGTCTTGC-------TTATCTTAGTAAAGAGATCTGGTTATGTATAAATAACCTGCTGCTGACATGGCACACGTTCCTGTGCAGGAAAA--GATCTGCTAAATGCACACATCAAGGACTGTAAGGCACTATGAGCAGAA-AACTAATATAACTTTTTTT
s HiC_scaffold_1 142376322 2031 + 233722169 CTTGAGTTGAGCTAATTTACTAGAATTTATTTCTAAG-CCTCGTGTGCTGACTCCTCTTGCCAATCAGCCCCAGCCTTCC---AGTCATTCTCCACTGGCTCCACCGAT--CTCCCACCTGTACCCTGAGCTCCCCTCAGCTTCTGAATGGCACTGATCATGGTAGACCACCTGTTAGGATCACTGGCAGCCCCAACTGTGGGGACGTGGAGCTGATTCTCCTGCCTGTGACCTCACTCTGCCTC-TGCACCTGTGTGCTCTCCCAGCTGTGTCCTGCCCTTTGTCTGTTTCTTTACCTGGGCAGAGCCTACATTGCCAAAGTCATTTAACCTCACACACCTGCTCGCTTACTGATCAGTTTGCTTAATGGgaagtttatttaaaatgtttcacatttttCTAGC---CTGCTTTACCATTTCCTGGCTTGTTCTTGGGTACCACTTGGAATGTGGTACCCAAATTTGCCCCTGAAACTGAAGG----------------TCCCGTCTCACT---CTTAGCTTGC-----------------AGCTTTAACATCACCGGTGGCTTTTCCTAGCTGGGTCCTCTCTTCTGCATCCCCTCCAGCACTTGGCTACTCTCCTGTTAGGAATGGACTGCAAATCTGAAACCTGGCCAGCATTGCCCACCTGATGTTAAAGTTATCTCTTGCTAAGACCTCCCCTGATTCAACTCACCTGCTGCAAAGAATCTTATGAATCGCTCATTTC-CAAGCTGAGCTGCTTTCACCTGCTTT----ATCAAAAGCAGC---------------------------------CTTATAGAAATGGCTCCTTCCTAACTTG---TGTCCCCCCCCCCAATCTCTGAAGTTCTATTACAGCTCACACTT------------GGGTCCCTATCAA-----------GTGTCTACAC-----TAAGGACATTAGTCCCAGAAACCCCTGTGCTCCTGACTGCTCATACTT------Catat------tcctccaatttttatttttgtctttcataagTCTTACTGATTGTGcccagatgtccccccaaag---cctcatgtgcacaTAG---------------AGCTTCTGTAGAGATGGCTGTGTGTCGAGAGTGCGATGCTGGCATTAGGG---TGTGTGCTTGCTAAATCAGCCCTCTGGTTTGTC-GTAGTTCTGGCCCTGGGGTGGGCA---------GCCTTCCTACAATATAAGGCACAGCAAGAGGCTTGtctctcccttg----ttgcttttgttgtcttcccgACTGTGAACTGtcacccttc---tgccatgagccaccctgccttggagccagccaattatggactgaaaactctacaaagagtgagctacataaacttttcccattttaatcttgggtgtcaggtatttgtctcCATTTTTAGTTGGATATTAAGAAGCTACGGGTTCAAGAGGTCAGCTTGATTTTACCAGCTCAGGCTGTTAAACAATCTTAGACAGCCATGCATTTTAGCTAGAGTTCAGCagaataaattttttgaaaagtccTGTTAGTGAAGAGGTGGACAATAACACAAATATGCACAGATTCCTGACAGAGCAGAGCAGCTGTAAGGAGGAAGTGGTGCATTTAACCACGGGTCTTCTGACTTTTCAATATATGCAGCTTTATCTgcagacaaataaaaaaaaacctctaagcaCGTAGCGctgaatttcattaaatttg-tacGCAGAATAACCCTTGACTAAATCACACTTTAGAGTCTACTCAATGTTACCCATTATAAA--------AGTGTCCTATTCCCAAATAAAAAAGTCAGATCCTCATTAACTGGGACAAAGAATGCTAGCACCAGTGTtcaagaagggaaggaaaatccCTATCGCTGAGTGACAGGTGTGGGTGTTAGTCGTATTGTAGCATAACCCTGGGAATTCATTAAAAATGTCAGGCTGTGTCACAGGAGCACACTGCATTGACAGTCCCGGTGGAAAAAAAGAACTGTGATAATTGCTTTCATTCCTTGCTTACCTTTTACCTTAGCAAGGAAATACCATTGTAAATAAATAACCCGGTGCTGACATATCACAAGCCTCTATG-AGGAAACCTGCTCTGTGAATCATGCGTCTCAAGGACTGGAGGGCActtttcacaaaagaagtaatAGGATTTTTCCT

a score=16967
s chr3           155342446 732 + 160039680 TGTAAGGGAGAATTGTAAGCc-actctctgagtca--tctcctg---tgtatgctagagatatatatgttaatagagtttggtatgcttttcttttgttaatatggcttttgttgcaaagtttccagctgtgaatttaggaaggaagaagaacagttatgcctgcttccccttcaGGATACATATTAGGAAAATGTAACTTGAAATTGTCATTATTTTAT-GGTAAATTTTATGTTCTTATAAAGATAGATTTACCATGGGAGAATACAACTTCCTT-AATAAAAAGAGACTGACACAAAATCACTAAAATTGAAAGAAAACTATTCCCAGAAACAACAGAAAACTCAACAGAATATATCTTTAATATTAAAATGTCAGAGTAGAAGGAAATCAGATTAAATGTGTAATAAGAATTACTTATAAAATTATTGGAAACATCTGCAACCAGTGTTTGTTATTCATGTGACAGAAAATGTTTGATTTTAAAT---------GTTCAAAGGAGTGTCTTGGCATTGGGTATG---CCTCTCTGTGAATGCTGAACAATGCAGCCTTGCTGTTCTGTGTCCACAATGGAGAGTGAAGAACAGACCCCATTC-------AGTATAAAGCAG--GACTTCCTCTA------------------caagagcccctgtagatgtctctggcctagaatagttccagactcacagtgcata--------cacattg----------taaagttttatttataaatttaacataataagaaat---taccattagcccacagtaagtagaa
s HiC_scaffold_1 142379373 781 + 233722169 TGTGAGCCAAAGTTCTATGTCTATTTTCTGGGACACTTGTCCTGAGTTGTATGCCATGCctatatattt--ataaacttttgtttatattt-tcctgtGAATTTGGCTTTTGTTACAAGGATTCTACCCAAGAACTGGGGTAGAGGGAAAATTATTTGTTC-----TGTCCTACAAGGAAGTGAATATAAAGATGTTCCTTTGATTTACCATTATTATATCTGTACATTTTATGTTCTTATAAAGATgggtttataaaagaaaaagaaaacctctttTAATAAAAGGAGACTGATGGCAAATCTCTAGAATTGAAATTAAATGATTCCTAGAGACAACATAGAA----ACA-AATAGATGTTTAGTattaaaatgtcaagatgaaggaaagTTGGATTAAATGTGTAATAAGAATTAACTTTAATATCATCAGAAATGTGTACAGTCACTGTTGGTTTTCCATATGATGCAAAATATTtagcttaaaataaaaagcacatcTAAGCTAGTTATTTGATGTTGCATAAGGAAGTTGTGTGAAGAATCTAACAAGTCCAGTAATGTGATGCAGGGTC--TGATAGGGTATGCAAGGCAAGTCTCATTCCATGTTAAGACTAAAGTAGCTAGCTTTCTTTGTCTGCAAGAGAGATGTTTCAAGAATCCAAGTAGTTGGCTAAAATAAGGAATATTGCCAGACTC----TGCATATTTTTCCTTACATAAAAATCTAtgctaaagtttaatttataaaatagccACAGTGAGAGATGAATAACAATAAACAAAAGTGAATACAA

a score=42719
s chr3           155348910 1100 + 160039680 ATGTTTAGTAACTGCCTATGACTGCTGTAACAACAGAGCCAAAGGTAGATGGTTTTAAATGTTACAGCCCCAGAATCTGAATGTG-----TCTCACACATAGATGAAAGGAGGTTTGTATTTCATATAATAGATAATATACTTAGGACACATGTACTGCTGATAATAAATTTGTGAAATTTATCACAGGGGCACTCAAGCCTGCTAAGTCTTACTAAATATAACTTTAAAGTAATGTTAATTCAGAAGT--ATAGGGACATACACATCATCTGTCCATAATTTGATAGCCTGTGATATGTGTAACCAATTGTTCTTATTTACATTAATTTGCATTGTGAAAAGCAATTTTACAGTTTCAGTCAGACTTAATAGGCAATTTGCTGCTGAGTGCCTAATGGCATAGTTACTTAAGCCTGCCCCAGGGGGGCTTTCCAGAACTGATATGAGACTAAACCTTTTAAATGTTCAATTGAATGTCTTAAAAAGTCAGAAAGTCTTCAGCTATTAAACCTGCTTTACATTTGCCTTGGCGTGTTGACTGCTGTGATGGCACACTGCCTTGCATTCAGAGATGGTTTCTCTCTGTAGGCAGAAGCTTCCATTCTACAAAGTACCTTAGC----CCTAGATGAGGTATTTCTCTAAAATATTACTTACAATAATACCAGCTTCAGGAAGCTCATAAGTATAGG---------TTTATTTCATAAGGCTTAAAACATTTTTACTTAAATAAGACATCAGTTAATATATCTACAATTAAATTTCCCCCCAAGCTACCAGAAATAAAA-----GCGCAGAAAGCATTTC----------------------------------AAGTG----------------TTTAGTTATCCTTACATCTTCTT---AGCCCATTGTTAACTCTTTGTTCTCCTGAAGCCTAGCATATTTCTTGACACTCAGTGGCCATGCAGAATAT-TTTAATGAAGTTTTGAGTTTCtgaggctgacaacaggtaggatatacaaagg-accactctgaagagtaaaa---cctgctaggtatccactgtacttg-gctccgtgacaataaaccagtcacacaccagtgatttgtgcttagtggag--gctcctcttcacttgaggagaaagGATCGACTCT--ACCTTCT---CAGCTGATCTTGCCGGGATCATG
s HiC_scaffold_1 142384221 1164 + 233722169 ATGTTTACTAACTCAGTCACATTAGTCTAACCTAAGAGCTGTGGCCAAATGGACTTTTGTAGTGCATCCACTGAACCTGACTGTAAGTGCCCTCAGAAGTAAATAAAAg-aggtttatattttatataatagctAACGTACATAAGCTCCATGtattacttaaaataaatttgtagaaTTTATTACCAGGACACCCAAGCCTGTTAAGATCTACTAAATATAACTTTAAAGTAATGCTAATTCAGAGGGTGGTGGCGAGATATGCATCATCTGTGGACAATTTGATAGCCTGTGATATGTGTAACCAATTGTTCTTATTTACATTAATTTGCATTGTGAAAAGCAATTTTACAGTTTCAGTCAGACTTAATAGGCAATTTGCAGCTGAGTGCCTAATGGCATAGTTACTTAAGTCTGCCCCAGGGGGGCTTTCTAGAACTGATATGAGACTAAACCTTTTAAATGTTCAATTGAACATCTTAAGAAGTCAAAAAGTCTTTGGCTATTAGACCCAGTTTGCATTTGCTTTGTCATATTGAGTGCTGCTCCTGAAGACTGCCTTGCCTTCAAAA--------TCTCTTTAAGTAGA---TTACATTCTACAAAATATTATAGCAGATTCCAGATCagac-tttcttcaaaataatatttaagacAATAGAGACCCCAGGTAGGTCG-ACGTGTAGATAATATGCCTTTGGTTCTTgagacttgaaatatttttattt-aacaaaacatATGCTaatatgtctaaaattatatttccttTCCAGCTTAAGTCAATAAAGCATTTGCGTACATAACTTCTtacattttcatgttttgatgactttctcatttacaaagtgttttcattctgtttcttttagttattattttatcttcttttatggCCATTACT--TTCCCTGTTGTTATTGAGTTTAGTGTATTTCCATACACTTAGTAGGCATGCCATAAATACCTACTCAAGTTTTTAATTACTGAGACAGAGCACAGGC--GTTATGCCAAGGTAACATCTTATAGAGCAAAAAATTCAGTTCAATATTGACTTTGCCTGCCCTACGTGATACTAAATCAATATTATTGC--TGCTTCATACTCAATGGGGAAGGTCATCTTCCCT------GAAAGAGCCTACTGTTCACCCTTTTAACAGCTGTTTGTGCCTTGGTGATG

a score=48949
s chr3           155352097 2120 + 160039680 TCACCAATTTATTTACACAAATAATTTTGAAATTAGTTGGCTTAATGAAATCAAAGCTTTTTTGGAACCTTCTCCCTCAGTATCTATTCATACTTTCTTGTCATCAGCAGAAACATCTCAAGAAGTCCTTGGAAATATATTTTCTTTGGATTTCATCCTCAGTTTT-CAGAAT-ATGATTTTCTTTTGAACAAGATTTGTATAGGGCCTGCATGCCCAGCAAAGTTGACTGACAATTGCTGCACAC-CTGTCTTG---TAACAGGCAAGAAAACCCTTATC------ATTAAAG-------CTCAAAC-CATGG-CCGGGTCATGGTCAGCAACACAAG---CAGCTGGAGCC---------CAGATG---TTCTTGGCTTTATACC----------------TAATAATGACATCTGCAGAGCTCCTT---CATGTTCCATGAGCTGA-GTCCATGGCTCCTAAAGGGAC-----TAGAGAGGCAAGTTAATTCACAGAAACATAAGCCAGGGCTCTGTTCCTCCAGCCAGCCA-AGACACTGCTCCAGAGGCCAGAC----------AATGTGCAACTGGTAGATTTCAAGCAATCAGGGCTACCTGCCAGG-AAAACCTCCATGG------------TGATTGAACCACATGC---CACAGAGTCTCCCTAGCAGAGGCTTGCTGCACAAGGCAGCACTAGTCTTGTTGGCTATGTCTATTTCCA---TGTTTCAACAAGAGAACAGGTGGGTCGCAGT--GTGCTGTACAGCTGAGCCATCTTCTATTTTGACTGACTGG-GAGCAGAGTAGAACTGCTTTCCTCAAAT-CCTTCATAGAATGAAATGGAACAGAATGTCACTCCTCTTTTTAAAACACTGATACCCACAGAGAGATAGAAATCTAATATTTTGACATATTGAAATTAACAGCTACAATTGTCATTTGCATATCACTATTTCATGTCCTGGGACCTTTTAAACAGCTTAGAGTATTTCCTGCCTAACATTGGAA-TGGGAGGAAATAGGATTTAGGAAATGGATGAGGTTGCCTGTGTGCCTTAATGCTTTGCACTACAGGGTGAGAGCATTAACATATAGAAAACAATTGTGTAC----AACCTACTCA-----------------TTTTTCATATTTTACCTCAGTCTTTCCGCAAAGGGCACTAAG--CAGATGCAGGGGGAAATC-ACTGTAGGATGATAA-----ATAATGAACCA-------------------AGGTAACAAAACAAAGGTGGTGATACGCGGCTCTCCAATATGTTCACCACTAACATTTGGAAATATAAATGGGGTAAAAGGGTAATTTTATCCTTCAGCTCTGCATAATCATGAGGAAAA---------GATTA-TAAGAATATTAATGGGTCCACAGCAGAGGCATTGCTTTAAACTATAA-CAAAGGCTTCGGATTCTGTATCT-----GGTCTATGATTGCTTTCTCTATAAAGAAATCACTTTGGATGTACCATGACCATTTTATGGTGGCCATTCTAAGAGGA--------------GATGTCCCATGATTAA----CTTTCTTAATCTGTCATAAAATAAA-TGTAGGCATGAAAATGTTATATAGAATGAACACTGTGCGTCGGGAAGTGCTAGAAGCATTATTGAAGTGTAAGGAATTT-GACTTGTATAGCTAAAAACTTTGGTGCTCTACCTA-----------ACCTAATTTTCTACAATCTC-CTTTTAGAAGCTACTGACATACAGTTATCCATGATGTCACAAAAAGGGACATGCGAAGGACACAGGCAGCATGAATAGGAAGCATCAAGTAACACAACTA---------TCTTACTACCTACACTGTACACACATACATTTTTCAGGGCACTTAGGTGATACACAGGCATTAATTGGCTAGTTGGCTTTAGCATGCTGTCAATTAATCTTTAAAACCATTAAGGCCTGGCATGGCACTGGAGGAAAGCAATCACTTCAACCTTTCAAACTGGGAAACAAAGATTATTCTGCTAATTAGTATCTTCTGTTTGCTAAAAGCCACAGAAGTGTGTGTTGGCA--------CAACTTTTAACAATTTTTCCAAGGGCTTCCCTTTACACTTTTACACATTTCTGTTTCTCTTTCATATTTCTTTGTACTTTGATCTTGTCTTAAATCTAATTTTAAGTTTTCAGTGCAATGCGAGTCCAG---CTTTTAACTGACA-AGAAGTTAATGATCATTAGAGAATTTCACTGAAAAGGATTTAGACACTAAGGTTTTTGTAAACAGCTTATAGTTTTTCATG
s HiC_scaffold_1 142392269 2272 + 233722169 ttattattttatttatttatgttttctttaaattaggCTATCtaatgaatttaaataatttttagggTTCTTTCCCTTGTTCTTTGAT-GTGCTTCCCAGATCGGTGCTGTTGGATTTCA-----------GAAACGTAGAATCTTTGGACGTCATTCTCAGATCTATGGAATCAAGAACTGCATTTTAACGGGATTCTTACAAGATTTATGAACACAGTAAAACTGACTGGCTCCTGTGGTATACTCTCTCCTACTCTAATGAGTGAGAAAACTGAGACCTAGAGGATTAAAAGCTGAGATTCAAGCTCATGGTCCGAGGTAGAGACAGGACGGCGGGGGGCAGGTAGAGACAGGCAGGGTCAGGTGAGGTTC----CTCTACACCCCCACCCCTGTAGGTGTGCCCATTTCCTCTGTAGTGACCCCTGGACTTGGGTCAGAAGTTACTGTACATGACGCTGATTGGAATAGCAACAGAGATACAAGCTAATGTTTAGAACGGGAAGATAAAACTGTGCTATTCCAGTGAGCTAGACACATTGCTCCAGCGGGAGAACTACAAGGGCAAATATGCAGCAGAAAGATTTAAGGCAGCTGTGG-TGGCTGCcaggtgaaaccactgtggatcTGGAGTTGCTCCCTGAGTTACATGAAGACACTAAATCTCTCAA--AGAAGCTTGCCATGGCTGGCGATGCTTGGCCTACACAGTATTTCTATCCGCAGTGCCTTTCAGGGAGAGAAACAAGGGGTTTCGGTTGGTGCGGCATGGCTGAGCCCTCCCCT-TGCTGAGCGATTAGAGAGCGGAGTGGGACTGCTGACTTTAAATGCCTTGATAGGAAGAATCGG----GGATGTCATTCCTCTTCTTAAAACACTGATATCCACAGAGAGCTGTAAATCTAATATTTTGACATAGTGAAATTAACAGCTACAGTGGTGATTTGCATACGACTGTTGCATGTCCTGGGACCTTTTAAA-AGCTCAGAATATTTTTTGTCTAAAATTGGAAACCACAGGCAACAGGATCTGTGAAACAGAGAGAGTTCGCTCTGTGCTTTAGTGCTTTTTAATGTAGAATGAGAGCACTGTCTTGCAGAAAATGATTTTGCATCGGAAACTTATTTAGCTATTTATTTAtcagtttattcatttttcactTCACCTTCTCCTCCAAAAGATTTTAGGGCAAATTCAGGgataaatttattaaaagaaattaagtaaaataatgaattagtgccacaaacaaaaatgcagatgGCAAAATAGAGAAAG-GACAAGTAAGCCCCAAACTACTT----GCTAGTATCTTGAAGTT--AGTAGATTTGAGATGTAATTTTGTGTTTCACCTTCCCGTAACTATGAAAAACAAAGATAGATGATCAGTAAGAGATTTATTGTGTCTATAGCAAGAAAA---CTCACAACCACATTCTAACTTTTTTGATCTCGTTGTTAGAATGGTCTGTGAT-ATTGTTCCTTTAAAGGAACCACTCTT---------TGATcattt-gttttatcctctttcatAGAATACTCTGATACATAAATTTCACATAAGTAATCACCCCTTTACacccaccaaaaaataaaatttgggcaTGAAATCAATGTAGAAAGTGAATTTTGTATACAACAAAACTAATAAGAATTTATTGAAGTGGCAGACATTTTGACTGGTATAGGTAACGATTATGGTAttgaatatagtaaaaaaaatacattgttctTTACAAATTAGCTATGAGGAGCTATTGACACG----TCTacataat-----agaaaaatatgtgCAGAAAACCcagaaatta-acataaaaagTATAAACTAAC-TATCTAAGCTTCAGCTCTAACTACCTAAACAATATGAACATACATTTTACAGGGCACTTAGGTGACATACAGCCGTTAATTGGCTAGCTGGCTTTCACATGCTGTCAATTAATCTTTTAAACCATTAAGGCCTGCCATGGCACTAGAGGAAAGCAATCACAGTAATCTTTCAAACTGGGATGCAAAGATTATTCTACTAATTAGTATCTTCTTTTTGCTGAGAGCAATTGAAGTCTGTGTTGGCATAAGCATGCAACTTTTAGTGA-TTCTCCTTGggctttctttaattctttt-tatattcc--tttctctttcacattCCCCTGTTCTTTGATCTTTTcttaaacactttttaaagtgTTCAGTGCAATACATGGCCATTTCTTTTCAGTTGAAACAGAATTTAATGATCACCAGAGATTCTCATTGAAAAAAATAGAGGTACCAGGAATGCTATAAACCTCCTAAAGTTTTATATG

a score=26387
s chr3           155381769 1519 + 160039680 ATAATAAGATCAAATTACTCAGGCTATTTTTAATATTTTTTATACTTTAGAACATGCAATATATA-------TGTTCCATGCTGTTA----TGGataaaaaaataattacttttaattataatCTCCTCTGGTGATATTTAGAAAAACCTGGCAAAGT-GTGACT-TTTTTTTTAAACCGATGGGCATCTGTTTCTGGCATTGTGCTTTT-----AAATGCACTATGCCTGCTGCTGTAGATAATGAATTCATCACACTATGATCTAGAGCCAAATAGATTGGGGAAAAAATAGCCAAAGCTGTGTGTCTAGGCAAAGTATTCTGGAAATGATGGACATAAGAATCTTAAAACTCCAGTCTCATTATAGGACTGGTGAGAGCCATATGGCCC-AAGAGCCTCGGGAAAATGGA--ATGAGTTGTGTCTGGCTCATTTTGCATCTGTGGCCAGACTCTGGTTTGAGTCGCATTGGAAAGGAGACAAAATCCTCTGGAATGGAAGCGATTTTGGAGTTTTGAGCTAGGTTAATAGGCTGTCA-TTTATTCTGGAGTGCTGTTTGCAAGGAAGATGTTTCATTTTAACTCAACTGCCACCTAGTGAGTGCCTACTTTGTA--TAGAACACCATTTAGGTACCATGGAAGGTGATTCCTGGCTTGGAAGACATTTTCCATACACTGAACAAAACAGTTACACAAATAGATAAGTGTGATATAATGTGTGAAAAGCTACC--TGAGGCAGACAG-CACTGTACACTGGAGAGAATGTGCAGATGAAAACCAGTTCATCATGTAGGTTGGACTCAGCCT-CTTGTTTATCTCCCAATAAATAGAACAGGGTCTTCACTGTCAATCA-AAGTCTGGTGGGTCTATGGACTGACAGTACCT----GACTCACCCA-GGAGCCTGGCATGTCTCACTATGCT-ATATTTGTTAAAATACGTGGTTGTGTCTGTTCTGGAACTTTTCTTACTATTTTTCTACTCATTCCAAACAAAATATATCTTTTTGAAAGTCA-AACTATGTGCCAGCTCTTCAGAAACTGAGGCAAGTGGTTATTGACAATTCTTACATACTATAAACAgcaaggatattgctggctggggacagcctagtctatatagtgagttccaggctagcctgcaatatagcatgaatctttttctctataaatcaaaaAATATATATGAAAATGATAATTATGCCTCCACAAGTACACATCTAAAGAGCTTATGCTGAGAATGAGTCACACAGAGTAAG-GCACAGAAAATAA---AGTCTGGTGTGCTTGACACATGATACATCATGCCAGAGTTTA--TGCTTCTTAGTTGGTCTTTCAGATTCTCATGTAAGCATCAAATGGCACCTACGCAGCTGTCAACCTTTTTTGATCCTTTCACATCCCTTTACTCTATATAAGCGATAAACAGATCAGGTGGTATGGCTTCCATCTTGACATGGACCACATTATTGTCAGGCATTGCAAATTATTAGCTTTGTGTCTACAGAGGCATGGATTGGCTTC-TCTTCAGtttccttctttctctct
s HiC_scaffold_1 142429200 1319 + 233722169 ACAATTATATCAGTTTTCTTGAGTTATTTTTAGTATTCTCAAAGAGTAAAATAGTACTGTCTATAGTGGATTTGCTCTGTGCTGTTAGTTACGGCTAAAATAAC--TTACATTTGATGATAATTTACTCTAATGGTTGTTAGCGAAAGTTGGCAAAGTcgtaattgtttttttttattcaatgGGCTTCTGTTTCTAGccctatgctttttaaaaaaaagcaccaTGTCTGCTGCTGTACATAATAAATTCATCACACCATGATCCAAAGCCAAGTCAACTTGGGAAAAAATAGCCTGGGCTCt-------------gtattctggaaaagatggacTTACGAATCATAAACCTAAACTCTC-------------TAAGAGCCATATGGCCTAAAAAGCCTAAGGAAAATGGATGGGGAAGAGCATCTGGCTC-TTTGGCATCCTCCACCGCATGATGGTTCAAGTCACTATGGAAATGCAAAGGGGTCCT-GGCAATGAGAATGG-TTTGGTGCTTTGAGCTAGGTTAACCAGCTATCATTTTGGTTTGGAATGGTG-TAGCAAGTAGGAT------TCTTAGTTCAGCCATCATATCCTGAGTGCCTATTAGGTAACAGAAATAGTATCTAAATGCTGTGGACTGTGATTCTTTGATCTATAGGAATTTGCAATCTAGGGGACAAAATCATGACACAA---------TGCAGCGTCATGTGTTAATGACTATCAATTAGATAGACAGATACTCTTAGCTGCACAATATGTT----TAAAATCGAGGTTATTACCTAGGTTGGACTCACCATGCTTATGCTTTGTTCGGGAAGAAAGCTAAAGATCTTTCTGCTAATTAGAACCCTGACCACTGTGTAGATGTGCCGTGCCTCTCAAACTTATCCATGGTACCAATGATCAATTATTAGGGTAATGTTTACTAAAAGGCATGACTGTGCCCAATCCAAAAATTCCACCCC----CCTCAATTCATCCAAACCAAAATATAGCCATTAAAAGGTTACAGTCATGTGC---------------------------------------------------------CAAGAATGT--------------------------------------------------------GCTTGA----TTTTATCTTGACATC--------------AAAATGAT-------------------------TAAACAATTGATCTTGAGGGTGAATCAC-TATGGtaagtatacagaaaaaaattgtatcaGATATGTAAGACGCATTGTATATAATGGCAGATTTTATGTGCTCTGTGATTTATCTGACAAATTC-----------TCAAATAACATGTTCTCAGGTGTCGacattttttaaagctttctCTGTCCTTTGCTTTAAATAAGAGATAA----GTCCAACTCTATTGCTTCTATCTTGACATGAATCACATTGTATTCAG----------------ACTTTGTGATTAAAGGCAggtgatttaacttcttcctcagtttccttatcccTATCT

a score=30865
s chr3           155388502 2264 + 160039680 TAACTATTTAATAATTCTGTATTTCCAACCTTTGTAAATTGTATCTCAGGTTTCACAA---ATGTCTTTGCTTTT-ACAGACATAGCTCTCGGCTCTGTTTGCCTTCACTCTAGGTTGAAAGCGTAAAGACAATCATTTTCAATCTATTATTGTGAAATTGAAAATAGGTGGTGAGTTCTTAACTGTCTTGGAAATAAAACCTCTTTACTCCATCTTGTGACTGAACCCCATTTTCAAAATTGTTTGAGGTCAGATCAAGGCTTTGCTGATGAGAAAAGGGTTTGGAACCTAAGCTGCAGCTGGCCTTTGCCCCTGTTGCCGCCTTCCCACATAATGCTGAGACACAATGTCTGGAACAGGCTGGCTGAAACCAATTATCTCACGAGTTC-------CGGCTTTCATTGCTGTCCAGACTCTA----TTCTGCAGGAGAAAATGAAGGAATGTTTTAAAGTAGGCCACAGTAAATGCAATCTTAGGCAGCTACATGAAAGGACACTTCAAATAAGTGATATAATTTAC---TCCTAATATA-AACTGTTCAACAA----TATCAAAATATCTTGCTCTCTTGTTT-ACCTGTTGTTCTAAAGTTACTCTCTGCCTGCTTGTGAGTTtctctctctctctctctctctctctctctctctttctttctTCCATTCTagcatctcatgaagcccaagatccctctaactcattacatagc------ctggacaatggccttgaacttctaatcattttgtctctttatacctagtgctgtgattgcagggagctacagccataaccagATAAAAACTATTGGTTTTTTGTTTGTTTGTTTGTTTCTTAGCTGTCTTTGAGTAGAAATT------ATACCCATGAATGAACTGTAGTCCATGAAAGAGATTATAGAAATTCTATTCCATACAGCATGGCCTCAGGCCCCTTTAATGTGGAAGAAGTGCCATGGAAGATAGACTGATGGCATTCATGTCATTAAGCAGGAAGA-TGCT-CAGGAATTACTGATCCATAGGAAAGCACTCAAAATTTTAGGACTCAGACTTACAGTACCAACGCCAATACATTCTCAGAACCTCTGGTGGAATAACAACAGAAATCTGAAGGGAAATCCTTCTCTTAGAGCATCCTGCCCAAGGCCTGGTCTTGAAAGGTAATAGTGG--GATGTGGAAAGAACC--AACTTG------TATCTCCAATGAGGGCTTCTCATCTCAGTGTCTGTTACCTGGCATGGGGTATCTCATGCTGGATCC--ATGGCTCCCTTGTCCTCAGGTAACATGCAT------------------------TATTCACTGCACAGTGGCTAG----------------TATGGAAGT----------ACTAGG--AGAGATGGTTAAATTTC--CTGACTTAGTGTCAG---------AGCTGTTTGGTCTCACTTTCAATGGCCTGTGTTGG-----TGATAGGCTTGCTAGGTCACAAGGAGAGGGACGCCCAACTCTCCTGCTTGGTAGAGGTA---TCTCACCCC--TATAGAGGAGAGTATGGCACCAAGGATATTGTGCAATTATTATTAGAACAAAA-------TCAATAAAAGAGAATAGATTTTCAGCAAATGACACGAAC-CAACCACTAGCTACAT--------ATAGAAATAAACTCGGAACACATAATCAAG----CCATTTCAAATAACCAGCCAGCACA--------TCAAATAATTTGAAATATATTATTTTCCCTGGGAACCTGCATGCTGTTTGTAAAAATAATTCCTCTTCATCCTTCCAAAATAATATGCACTTTCAGGACCCCTTCTTTTCACTCATGCAGGTTCCCAGCACGGAATCATCTTCCCTACATTATTTACTGTAATCCTTCAAAGGAGGCTTAACTGCCACCTC-TCAGAGGGGCCGCCCCTGACACTGGGTTCT-TGACTGTAATTAATCA-CCCCTCTCTGATCACTACAGCACAGCTATTTCAACATGTACTTGGCACTTACTCAAGTCTGCTTGTATTATGATCAGACATTTGTAGATGTTCCTTCTCCATGAATCTGTG--CCCTCCAGAGAAGC-TTTCTCTACTA-----TCATTGTGGTTTTCCCATGAGGCTTTATTTTTTTTTTTTTGGCCTACTAGCTTATTAATC-ACACAAACACATTTGCAGGGATAAAAGCACCTGTATTTCATAGGTC----AATTGACTAGTCATTCCACTTCTAATTTAAATATGATTTGTGTGAATGAAGTAGGTTAAAGGTGAACAGACTACAGAGTATTGGAAGACTTGAAATATAGAGATGATTTGGTTATAGCTGTTTTAACATGATCTAAGAAGTGAGAGAAAGCAT-TTCTTCTA--GGCCAATTCAATTTTAATAAAAGAGAGA
s HiC_scaffold_1 142442025 2176 + 233722169 tatcaattttgcaATCCT-tcttttcaac-tttaaaaaatgt------ggttTCATAagttatgtttctgttttttgttaatTTAACTTTTGCTTCTGATTGTCTTCACCTTAGGTGGAGAGAGCAAAAAGAATCATTCCTTCTTTATTgtcttaaaattgaaaataggTAGTAAGATCTTAATACTGCTGGAAATAAAAATCCTTTGC-CTATCTTTTGACTGAACCCAATTTTCGAAATTGTGTGAGGTCAGATCAAGGCTTTGCT--TAAGACAACAGTGTCAAACAAAAACTCTACAAATCCTTTGACCTT-TTGCCATGTTTTCATGTGATACAGAGATACAGTGTCTATAACAAGCTGGTCAAAAccatttagctca-gagtttgatgttatagctttcattgcatctcagtCTCTGACTGCTTTgcatgagaaaatgaaataaagttt----------aaTGATTAATATAGTTTTGAGATTCTATAACAAAGAGCTCCCTAAACAATAGGTTTCTTTTATGCATCATAATCTGCAATGGAGCAACATCCATTGTCACAAGTTCTCCCTGTCTTGTTTCATCTGT-GCCAGaaggatattat-------------------------------------------------ttttatttcacaatattaGTTTGTTTTAAGGAGCA-------TCTA--TGAGTATATAGCAGTCAGCTGAAAGATG--------TTTCCA-------------------------GATGGGCTTACAA--AGTTACA--CATCAT--------------------------------TTTAATTCACA--TTCCTTTGGAAAGAACTTTGTCTTATACCC-TGAATCAGTTAGA-------AGGAAGGCTGTGGAATGCTGATACCAC-CGACAATGTCTTAG-------------------------------------CTG-------TAATTTCTTTAGGAAAGAAAAGTGCTTCTGTTCTTAGTGCTTCATC----AACTCTCCAAATTTGGTGACATGAAGGCACAACTGCAACTTTAGTGTGC-CACAGTGCACATG----AATG-CAACATGGTACACCAAGAAAAGCTGTCTTCTGCTCTACACTGTTTGGGACCTCAGCTGGGAAGATCGAGGAGGTAGAGGTTGAAGCAGCTGAAACTGGAAGGCTGAGTTCCACAGAGGCTTTTTCAACCTCATGTCTGGCACCTGGCCTGGGGTCACTCCAACTGGGATCTTATGGAG---TTGTCACCAGTGCACCTACACACATACCTTGAACATCAAGTATGGTCTCTATTGCATGTCAACTGGGTCCCAAGAATAGTGTTACGAAACTGATTTACCAAACCAGGCAGAAGGTGTGTGGATCTCTCCAGACTTACTCTGAGCAAACATTTGGCATTTTTCCCCTGCTTTCTATGGTTTCCAATGAGGCATTAATTAGTACAACTGGGGATGAGAAGAGGGAAAACAGTCTCCAGCACTTGTTCAAGATACAGTAACATCACATTGTAGACGAAAACATGGC-TGGAACACACTGCATGACTatcattaggaaaaaaaagtattgaaaaacaaaagaatagatttt-gGCAAAAATGACAAACACAATCACAATTTACATTGAAGCACATGTAaggagaacaacaacaaaaaaccatgaAGCCTATTGAAAATAACCAGCCAACGtacaagaagctgaaacaagTACAAACATATTATTCTTCCTTGTATCttac--------------------tcctcctccttttccagaAATAACACACATTTTCAAGGTTCCTTGCCTTTACTCATGCAGGCTCTCAGCTTGAAATCATCTTCCCTACATTATTTATTGAAATCCTTCAAAAGAGACTTAAATGCCATCTCGGCAGCAAGGCTGTCACCGACACTGATCTCTCCAATTGCAATTAATCATCCCCTCTCTGATTGCTGCAGCACCG-TATTTTAAC-TCTACTTAgcactgactctgttctgctttTATTATGATTAGATATTTATAGATGCAATTTCCTTACTAGTATGTATCCCCTTCAGAGATACATATCTTAACTGTGTGTTCGTTTCTGTTTTCTCACAGGGCTTTG--------ATTATGACAGACTACTTTATTAATTGGAATACAGGTAATTG-AGATGCAGCTGGTTTTGTGTTAAGCAAGTTTACACATTAGCTAGTAGTTCTACCTGCAATTTATGTAGGGTGCATGTGAATGAAGTAG---ACAGGTAGACAGTTTGAAGcaaac--aaatttttgaaaaatagagaGGAATACGGGCTAGGTATTTTAACATACTCTAAGGAG-AAGGGAGAGTGTGTTTTTCCACTGGAAAAATCATTTCTAATATGAATAAGA

a score=43163
s chr3           155398716 3013 + 160039680 AAATAAATTTGTGAGAAAAA--------AATTGTTTCATATGATCA---------AGATGAAATTTCATATTGTCAAGA------CCATAAATTTAGGTAATGTTTGAGCATTTGACTATTAGAGAGTATTTACTGTGTAATAGTCTTAGAAATGGTG----GAAACttt------ttaaaaattattttaatattCCCAAATAATAGATATGTCTCCCTACATATCACACTAAAACACACAGAGACTAAATTTTTAAAATAC----TATTAGAAAGACCCATTAAATTTTCACCCCACAGTCCATGTGCTAATATTAGCCCATGGGTGTGTTCTAAGGTCTACATTTATAGTCTCCAGG-AAGAAATCAGAC-CGATGTAATGAATTCATTACTCTAGTCAATACTGCATGACCTGGAGCAGGAAAGGACATTTTAACAAGGGCTTTTAAGATTTAAAATTACATATAAATGATAATTATTTTCATGGTCACACTAATCAAGGCAAGATTAGCTTGATCATTACAGTAAAATGTATCCAGAATAGAAAACTGTTCTAAAAGTCACCATTTGGACCTGGGTACTTTTTTGCTCTTCTTAGTTTTGACTATTTCATAGGTGAGGGTTAACATTCTTCGAGTCCTGGAGGCTGCTGATTCCTGAAGTTTGA--AACACTAGTGGTTAT--TTTATTACTTGATCTTAAATATCTCATCTTAGACAGTGCATAAAGCATGCTAGAACACCCTTCCCAACATTAAAATCAATAATACCATATGAAAGAAGGTCTCTGGAGAAGTGACCATGTCATGTTTTGAGGAACA-CTTGCTGCTCATGTGACGTTTCTCTGGTCTTTGAAAAAACTAAGTTAATAAAACCTGTGT-----GACATGCA---TCTACTCAGAAACGGCCACTGTTCCCCCTGGGCTGGACTCTTGTAGAAAGTGCCATAGCTGGAGTGGTTGGTTTTGCAGGTTCCTTCTGATTCTA-AAGACTACAGTCCTGTATCTTATTCTCAAACACTTCATGACACTGCACAATT---CTCAG-GGGAAACGTTGTGAGTTCAGTAG-------CATCTTCCAACAAGCACTGGAGAAACAGAAT-AAAATGAAGACATTTT-TTTCAGCTCACACTGACTTTCATGTAACTGGAGGCTCAAGGTTAGTGTATTACACCATGGCAAAACAGTTGCATGCACAGGGTCTCCTTTTCATCTCT-ACCTCTGACAACACATAATATATGGGAAAAGTCCTTTGTGGTTCTATAACCACTTCACTGGTGTGTGCATCATGCTCTCTGCCAGGTTGTTTAGTCCTGGATGCCCTACACTTCTCTCTACCAGGCTCTGCCCACTCTGCTCTGCACCAAGCTTCTCCCACTTGCTCTCTACCAGGCTCTGCCCACTTGCTGTCCACCAGGCTCTACCCACTCTGCTCTCCATAGGCTCCGCCCACTTTGCTCTCTATCAGGCCCTGCCCACTCGACTTGCTCACTCTTCATTATGTTCAGCTGCTCTCCTCTTACTTCCATTTCTTCCTTCTCAGTGCTTGCCAGTCCTGACCACTGATTACAGTTTTGAAATTTTTTTTTTATCTTATTACATTTGGAGGAGTATACTTTTAAATTTCTAGTTTGCGTTT--AATTTTTATTCCTTGTTGCAGAAAATGTAAAATCTTTCTTAGCTGCAGACATAATTTAAGTGTGACTTCTCTCAGG-----------ATCTTTCCTGGCACATGGTGAGTTCAAGACACAGGGCAACGAATCACAAAACCAGAAAGCCCTCACCACTAAAACATGGCATCATCTGCTGTTGGGTTGCAAAGTAAAGTGGAAATGTCTGATTCTTCTACCACAGCTGTACTTCTAGTTCTGGGCATGATAAACTCTTCTTGGTGGCCCTGGA----------ACATTTCTGATAAATGTCCCCTCTTCAAATTACACTTATCTGTCACGATGTCATTTTCTATTGCTGTTCT--ATCTTCAAAGTTGTATATTTTCTGACCCTACTGGGCTGACAGGAACATTAGAAAACTTGGCATACTGCTCAACTCATCTTCAACTTTATGCATTATGCCCTCTTTCAATTTTATAACGCattttaacttgtatatgtatgtgcatctgattttagtgttctcagatgacacaagaaggtctcgtgctccctggggctggagttacaggtgtttgtgacccatctgaagtcgatgctggactcagattctcagcaactgaaatgcaggttctccctccttgagccacagctatagttccTTCCTAGCCATTTTTGATCCAGGCTAGCTGAGATGATTGCCACAT-TGTTTAGTTGACCCCCTTGATAGCTCAGTGAGAATAGTGCTGTTATACCACGTTGCAGCCTCCTTTGGCTGAAGGTCACA----CTGAGTTTCAGATCCACCCCAGTGTGACTTGCTCTGTGGCACTTTAGCCTGAGTGCCATT---TTCCCCCAGTGGGGTCACATTTGCATATTCATTCCTACACAAGAATATGCTTAAAAGATTATGGAAAA---------ATTAGTATA----ATGGTAGAGGTATAGCTTTGACTTTACAGCTGGTCGCTGTGCTCATAACAGTGCAAACCAATAGGGAGTTAACTGAGGTTGACCTGGAGGAATCCATCCTAGAC--------------------------GAGGTTCACAGACCAGATCCTCA---AGGATGGATGCACTTGGGCAGATAGTGATGGACTAGTACCACGTGGTACGTTGATGAAG---GCAAAGCAAAAAGCCCAATCATTCTTTTAAAAATCC-TCCCCTCTG-TTTCTATGCCA-CCTGGCAATTATCTAGAAAACAAAATATGAAATTATC----------------------TTTCAATAAAGA-GTGACTTTTCTTCCCGGAGACCTGTTTGATGTTACTCTAGCACTTGA-------ACTATCATTTTCCCTTATAAAAGGTCACTTATGCGCATCATCTTTCTTTCTCTGAAATATCTTTTAATCTTCATTTACACAG--AGAAGTGAAAAGAGGATTCAGCTTAGTGGGTCACTTGGAATGGTAGTTACACAACCACAATGATAACTCTCAACCTAAATGTTCGTGGTTTTGTAGACCTACTTCTTTTACT
s HiC_scaffold_1 142451877 2701 + 233722169 aaatatatttgtttgGAAAATGGAACCAAATTATTTTGTAGGAACACATACATTGAAAAGTATTCTCA----GTCAAGAGAGTTACCAAATACTTAAGT-----TTGA----ttgacttttgtattttttacaccaaaaagtaatataagaaaagaaaaaatgagactaTAATACATGTAAATTTTCTGTACTACACATAACTTATAAA-ATATCTTCCTATGTATCACACCAAAATgtgtataaattaaatattttaaatatgaattgtCAGAAAGACCCATtaaattttcaaagcaaagtcTATGTGCTAATATTAGCACTTGAGTATGTAATAAAGTCTACATTTATAGTCTTTAGGGAAAAAATCAGAAGCACCATAATGAATTCATTATTCTAGTCAATATTGCATATCCTGTAACAGGAAAG-ACATTTTAACAAAggcttttaagatttaaaattacatataaatgataattattttCATGGTCACACTAATCAGGACAAGATTAGCATGGTCATTAGAGTAAAATGTggctggaaaagaaaatgattctaAAAGTCATCCTTTGAACctgagtgttttttattttatcttagttTTG-CCATT----------GTGTTAA-----TTCCA-TCCTGGAGTTCATTTCTTCTTGAAGTCAGAGCATGAGTAGtgggtattatttttttctcaaaccCAAGTATCTCATTTATAGCAGGAATCAAAGGATAACAGGAAGACTTTCCTGAGGTTCAAATCAATAAT---AGATACAGTGAGGAAGCTAGAGAGGTGTTTGTACCATGTCC--AGGACCATTTTGCTACTTTTGTGATAAGTCTCTGGTCCT----------------ATGTATGCTTTGCTTCCAAACATACAATGTTAGCTCAAGGATGAATAGCATT-TCCATGTTCTGTAACCTTG-ACAAAATTCTGGAACTGGGGAAGGTGGCTTTCAAGGTTCATCTTGGCTCAAGAAAACt--gattctctgtctttctctcaaaGTACACAAGTCAGTGCCAAATGAAACTCAGAGGGAAACTTTGAGAGTACAATTGTCCAATACATCTTCGAA-AAGAGGTTAAGATGTTGAATCGAAATGAAACCCCCCCACTTGGGCTCACATTGACTT--GTACAGTTAAAGGTTC-----------------CCCTG------CAGGtgcat-------------ttttgctttctgaacTGTGA-AACA----------GGCAGCAGTCGT----------------------CTGGCCAGTACATGATGAAATAT-----------------------------------------------------------------------------TCACTTGCTCCTTG--------------------GTCTTCCAG-------------TGCTAT--------TTCCTTCCCTTTATT----------------------------CTCACTCTT------------------TCCCCTCACTT-----------------GTCAACGCCAATCCGCACC------TgtcattctgtatttatttttccaactAATACC--TTAGAAGACTAGCTCTTGAGATTtccattatatttttcaaattttggctCC------AAAAAAACATGCGTTTTTTCCGAGGTGCAGTCTTAATATAAAACCTTTTTGTCTCCAGATTCTTTGGTCATCTCTTCTAG-ACACGCTGAGTTACTGATATATAGCATTTGGCTAAGAAAGCTCTGAGCCCTTGCCATT-AAAcctaatgtcatttgtgtttagGTTGGATAGTAAAGCAAAACTGCCTAATTCATATAGATTCACTGTGCATTGTGCTTTGAAcaggaaacattattttttttgagTACAAAGAATTTATCCACATTTTTCACAAGGGCCAGACCTACAATTTATACTTACCTAGCAT----TCAGTctctaattattttcttcttcttcaaaaTTGTAGACTTTATAATCACAGTGGCCTGATGTGAGCTTTGAAAAACTTAACA----------------------------------GCACTCTCTGACTAT--------ATTTTGACTT--------------------CCTTCATGTTACTAGATGA------------TTTTGATCT------------------GTGCTTGGGATTTATC---------GGTTTAATTAA---TCTCA-----------------TCTCC-----------------ATAGT---------GGCATCTCT-------GCTAACTGACATGATTTCTAACTATGCTTTGTTGATCCCTGCAATAGATGAATGAGAATAAAGATACTGTAGCATATGGCAGCCTCTCTTATTGGGGAGGCATATGTGTTGAGTTTGAGATCCTCCCCC-CATTCCCTCCTCAGTGTAATTTTAATTGGAGttgtatttcatttctctgatAAGGTCAGTTTTGCATGTTCTTTCCTTGACAAGGCCATGCTTAAGAGATTCagaaaaattattctttgttATTACAGGCTGCTGTAGCAATATAGCTTTGCCTTTAAAAACTGATGATGAGCTCATAATACTTAAAATTGACGGGCTG-TGGCTGAGCTTGATCTAAGAGACTCTCCCCTGAAAGTTCAGGTGACCTTGTATGAAGGTGGGGAGCTCTCAGCCCAAAATTTCAATGATGATGGATGCATTTTTCCACATAATGCTATGCTAATATGATGTGATATAGTACTGTAGCTTGGGAAAAAAAAGGGATAATGGCTCCTTAAAAGCtttgtggcttttgttttctgtgtaagACTTTAAATTATCTag---ataaaacattaatttttccttggtgtttctatttcttccttttcaataaaaatgtGCCTTTCCTGCGGAGTGACCTGTTTGATATTACAGTGCGGCTTGAAAATATCACTACTTCCTTCCCCAAGAAAAGGTCAATTACGCACAACATTCCTCCTTCTATAAAATGTCTTTCTGACTTCCTTTATACAGCAAAAAGTCAAGTGGAGACTCAGTCTGCTAGTTTACT--GAATTACATTCATACCCCTAGAA-GATAATTCACAGCCTAAATGTGCTTATTTGAATCAACTTCATTCATTTGCT

a score=53599
s chr3           155407849 3178 + 160039680 TTCTACTCACATATTCTTCAAAAAGGTGTCTCCAACCTCTTGAGTAAATTAAAAGTCAGAGCCGCAGG--GAAAACAGAATAAGTGGTATGCTTACTAAGTGGTATACCTCTAGCATGCCAGCCA---------------CTCTCATGTCTTTTAATCTTTGCAAAGTCTACAACATTGATTTTAGTATT---TTTATTTT-TAGGTACAAATGCTGAGTTGTAGAAAAAGAGAGGGTTTTTTTTCCCCTCCAAATTAACTCATATAGAATATTCTGGAAACAGAAATTTGTTGAAGGTTGGGCAAGTTCTGGAATTTACTGGCT---------TCAGCCTGTACGCATCATTCACATCATGGTTTATCATGACAACTCTGCATTCACAGTTAATG--------AAGGGAGAGTTAGCTTCCAAAGAAAACACTGTACTTACTTGAGACTCAAGATTTCTCGGGGACAAGTGTTTGTCCCAACTATCTT-CCCTCACACTT-TGAGACAACAGGTGACTCAGAGGCGTATATGAGATAAAAGTAGGGTTACCTTAATTTTCCCCTAAATACAAGCATATAAAAGAAT--------GGAAAATTTAAACACT--TCTGTTTATTAATGAGATAAATATAATATGTATacacacacacacacacacacacacacacacacacacacacacccacacaTGCAGCCATTTCTGAATG-----TCAAATAACCCCTCTGAGTTTTCTCCTTGAGTCT----CAAATGCCACT------TGAGGACTCTGCT---------TCCTCACAGTCATCCTTTCTTTATGAAGTGATGCCATATGCAAACAATGACAGCATTTTCAATACCTTTCTCTGGAAACCAAAGACATTTGACCCAGAAAAGATGCAGCTAGA-----CACAGACGCCATGGGTGGTACTAACCATTCAGTTCACC--CAGCATTCACAGCCTGGGGATCCA--ATAGGTCTAGAGGATTTGCTAGAAAATCCACAGGAGGAAATGTCCCTTTGCCTTACACAGTTACTGTCACATGTCCCTTGGGGTAG---------------------------------TCACTTTGTTT-----ACATCTCTTTGTGGGAGTTTGGGGAAGGAATTCACATGGACACAATATTTCCCAAGG-TTCCTGTTCTTTTTGCTGGTTCCTGGGTTGCCAATAGCCACCTTTAAAATATGCACAGCTCTGCCTGTTTGACATATATTTATTTTTGTAAACTTTGAAACGTTAAAGGGAAAAAAAAGGCCAACTGCAGTTTAAATACACAGGATACTTGCACTTGTAGAAAATCTGTGGTTGCTTGGCAACCAGAGGGTGACTGTTTGAGGAGCTCAGGGAGCTTTGACAATGTGACTTCAAGACAGGTGAAGGGCAGTAGGAGGCACTGAGTCTGCTGAAAGGAATCGCAACATGGAAGCATCATTTAAATAAAGATTCATCTCTCTGTGTGATGATTCTAAGGAGGTAA-ATTTCTAACATACTGCCCCCCTCTACAGATGTAAC--------TGGGGGTTCAGAGGAAA-GTAGCCTCAGATTA-GAATTGTA-TCATAGGAATAGGCCACGTGCAGGCAGGATGCTGTCCTAGCTTCTGGGACTTTCTGTTTATCACCAGAGTAGCCAT-ACTGCCTTATGAGTCAGTGACACATTAGAGAAAAAGACTTGATTTGGAAAAGTCTC-TTAAACTTAATAAAGATCAGTGATCATTAACATGGACCGCATGCTGACTCAATCAGCACAGGGCTCTGCTAATCACAGGCTTTTTTTTTCTCGTGTCCATCTGTTTGTAAGAATTCTGAGAATCTGTTCCAGATGTTCATGTAAATATAATAGGTCAGTT-CCATGCAAAAATAACATTCTCTACCATGCATGTGTGGCCCTCT----ATATATTCACACTGTCA-----GCTGTATTTAGTCTTCAGTGatataaataataataaaatataCAAATTTCT---AAGTGTCATGGTGAACTGTTTTGtccccctcttctggtcccctctccttcctctttccatacctcatcccctctcccttgcctaccttttcttcctttccctctcccttttccttctccttctgatgcctctcttctctctatct--------------ccctcCTTGTGTATGAGTTGTATGTATGTTTTGCTGAGTAGTTTTTCCCAGCCT---AATACAGCAGTGATTCTGTGCTCTATCTGTAAGTAGCAGCATAAAAGTCACAT---GTGACTGCTGTGTTC-TCTGCTTATAGCATTAACACTCTCCAGAC-TAGCACATCACATATGGCCAGGCTGAAAAGTGAAGACGCAGTGTGTTTCTTGCTGAGTGTTGAAGGGCCATGGTCCCTGCTAGATCTGTCTTGACTACAGACATGTCTCTGCCCTGACCGCCCCTC------CCCAGCCTCCATCC---TCTGAAAACTCACTAAATTCAAACAAAGGGCAGACATATGGCATTTACAGACTTGTTTTGCA-TAATAAATGACTG-AGTTGATCAAACTGAAAGATTATGGAAGTGGTCAGCTGAAAGATTGTAAGAATCAAATTAGGGCAAATTTGAGCCTTTTTTTTTTTTTTAAGAAGAAGAAGAAAGTGCATTTTAAAATAGCTCCCTGTACAATAGGCTTGAAAGTATGTCTCAGTCACTACCAGTTTTATGGCAACTAAAAAAATGTTTGAAACCAGCTGGTTGTAGATATGGCAATCAAATCTAATCTAAATCATGGTGTAATGTTAAAAAAAGGAATCAATTTAAAGAGCTTTGGACCAAAGGCGAGCTGCACAATGAGTATTAATCCCCAACAACGAATTCTCGTTTAACCCGAGTTCAGAGGTTGGTAAATTAGATGCTCTAGTAAA-TTTAGTTGTAGAATATTTCCTAGATAATCAAAGAAAACGGACCTGTACACTGTTAGAAAGAAAGGAAAAGTAACCCTCATGGAATAATAATAAAATCAACTTAACAGGAAAA---------------AAAAAGGAGGGAGGCTAACCC--TGTGACATCACAGGAAGGCAAAACAAGCCAATTCCCAAGCCACTCTGCA--------------CTCTAAGGCAAACTACAGGTCAGAGCCATCCCAGTCTTAGCCTTGAATGAGAACTTGCTGCATCAATTTAGGAA-AGGGTGACATGAAAAAAATTAATAAAAGTGTACTCAAATATCTGTCTTCTTTGTCTGACTACAATCTACCCTTTGCATTAATTTTTAATTGGGTAAAAAATATATTAAGGGACACAATCATAAATTATTTCATGTGACATATTCTTAATTACTTTTTAATGTATACATGT
s HiC_scaffold_1 142458304 3065 + 233722169 TTCTACTGATAAATTCTGAACAAAGAAGACTTATGCCCACTGAGTGAATTCAATAATAGAGTCCCAGGCTTTGTATTGAATAACAATTGTTGCTGCTGTATATTATA--TCTAATATGTCAGATAATGAACgcattaaatttattatttcatttaactttcacAACACCTGTGAAGTAGgtattattgttatcttcattttatatatgAGAAAACTGGGTAATAACAAAAGA-AGAGTTTTGTT-------CAAGATCACTTAGCTAGTATGTGATAGAGCTAGGACTTTGACCGGGGCCATATGAGTCC-GGAGTCCCCTAGTTGGTTGTGAGTTACACAATAAGCACTATTCATATGATTGTTAACAAAGGTAAATTT---CTCATCTTTAATTCAGTTGCCAAGTGAAATTTAGCTTCC-------------TGCAAACGAAAGACACCAGATCTCTTACTGACAATTATCAGTCAAACCAATCTGGCATTCACTCTTAGGAAAAAATAGTTAATTTAGAGACatata-atgacaaaaataaaatgacct-aATTTTcctgtaaa----aacataaaaaaaaattatgaacagGAAAATATGTACATCAGGTTGATTTTAAATAAGATTAATCCAGGTTG-------------------------------------------------ACATGC-----CTTTTGAATAAGACATTGAGtaaattctctgtattttct--ttcagtctttcacAAGTCTCATTCTCTGATAAGGAAGTGACTAATAAGATCTCAAAAAATTCAtcctttctttgaaaattggTGTTAAAAGCAACTACCAAGTACATTCTCAATACCTGTGCCTGGAAATGAAAGCCATTCAACCTACAAAAT-TCCATCGAGAAAGGGCACAGTTGCTGTGCCTGCAGATTAGCTGAAAGTTGGTCATCAGACCAGATATTCTACTAATCCATAGAAGCTCTGGAATACTTGATAGACAGCCGTCAAAATAACA-ATCTATTTACTTGGTGTTGGT--TGTCAAGTGCCACCTATTTTAGGAAGAATAGAGGATGCTGGTTTCTCTTATTCGATAAATTTGTTACTTTAACATATCTGTAGAGGCTTTCATTAAAGGGAAAAATCTGAATACACTGCCGCAAAAGACTTTCTGCTCCTTTAG-GGGTTTCTGAGATCCCAATA-----CTTT------------GCTCTACCTCTctgacatatatttatttttcgaaactttgaaaagttaaag--aaaaaaaaggccaaCCGCAGTTTAAGTACACATGGCACTGGCACTTGTAGAAAATGTACGGTTGCTTGGCAACCAGA-GGTGCCTATTTGGAGAGCTCTGAAAAGTAC-ACAATGTGAGTTCAGGATGGATGCAGGGCAGCAGGAAGCTCAGAG-CCGCTGAAATGCATCAGAACACGGGAACAATATTCACAT-AATATACATCTCCGTGCATGATTATTCTCACGAGATGATAATGTTGCTTCTCCGCTCCCCTCTGCAGATATAATAAGAACAGTAGGACTTCAGTGGCAATTTAATTTCAGTTTCTGAATTTTACTTCTTTGAACACGCTTTGTGCAGTCTGGGTGCTGTCTTAAGTACTGAAATAGCATGTTAATAACCGAGGGAGTTATCGCTGCCTCCTTGGTCAATGACATGTCAGTTAAAGAAATTTGATTTTGGTAAGTCTCACCAGCCCTAATAAAGATCAGCAATGATTAAAATTAACCACATGCTGATTTAATCAACATATAGCTTTGGTAATTACTAG---TTCTTTCTGCATGTCCAtctgtttttaagattttagtgAACCTGTG-CAGATGTTCATGTAAATATAATACGCTGGCTGCCATGTAAATATAACATTTTCAAGTGTGT-TGTGTAACAGTCTTGCAATTTATGCATACTGttgtttgtgcttttttttttctttagtggcTGAAAC----ACAAAACTGATAACTTTCTTAAAAGCCCCATTTGGCACAGTT---------------------------------TCTACGTAGCT---------------------------------------------------------------------TTCTGTATATATGGGGGTTGAGAGGACACACGAGTTGGTTGATTTCTATTCA-GTAGTGCTAGGT-GTTCTTCAATGCCTTAAGATATTGCAAAATATTTACCAGCATTCCAGGAATGGTAGCATAAAAGTGAGATTCCATTATCACTGAGTTcaacagtatttaaaataaatcccTCCTATTCATAGTATGTATGATCCATCCATGTTAACTGACAAAGTTGCAAAATGATTTCCAC-------------------------------------------ACACAGATGCTTCCACTTTGCGAGTCTCACTACTAATCTAGCTTCCAGTCCATCCGGAAAATGCACTTTATG-AATCTAAGCGCTGACACATGccattttcatgcattttttaaagtaaggaaTTGCTGAAATTGATCAAACTGGAGGATGATGGAATTGGTCACTACAAAGATTGCAAGAAGTAAATTAGGGCAAATTTGGGCTTTTTT---------------AAGAAgaaagtgcattttaaaatattgccctATACAATAGACTTTAAAATGTATTCCAGTAACTAACAGTTTCATAGCAACT---AAAATATTTGAATCCAGCTGGTTATGGATGTGGCAATCGAGTAGAATCTAAATCATCCTGTAACACT-GGAAAAGAAATCAATTTAAAGAGCTTCAGatcaaagg-aaaatatgaaatgaGTATTAATCCTCAA-GACAGTTGCTATTGTACCTGGATTTCACAGGCcactaaattaaattttctaacaAGCTTTGGTGGCAGAGTAGTTTCTAgataatcaaagaaaacagatctgtgtaatttt----taaaaggaagaccagtttcaataaaata--aaaaaattgaaagtcaaaggaaaataaGACGTATTGTGTGAaaatgagagaaactgaccctGTGTGACACAGCAGAAAGG-------AGCCA---CTCATGTCACCCTGAGCTTCCTAACAAGATCTCTGCAGCAGTCCATAGGTTCACACACTTGGAAAGTGGGCCTTGCGTGAGGATGCGATTACTAGGCTTAGCAAGAGGGTGG---GGGAAACTTTAATAAATGGCTGCTTACATTTTTCACCATTTAatc-aacttttattta-tttttacactgaaGTTTAA----GTAGACAATGTATTCACATATGCAAG-ATATATTCATTTGTGAGTAA-------AATCACATATGAATGTATTCATGT

a score=35025
s chr3           155416555 1465 + 160039680 TGACTTATG-TTTCAGGATGATTTGACAATTCCACCTTTGCTTGAATGTCTTGATATTCACTTAGTTATGAGAAAAGA----------------ATGGCATTGTAGTGTC------TTAACCAGCAGTATCTGATACTGAATGCTTAGCTCAGTCTAAAGTC----------ATATAAAACCACAGAA-ATGGATAATGTGTGAG-----ACTGAGGAGATGCACAAATGTAGGTGTTGAGTATATGTTTTAATGTTAACCCGTTTACACA-----TGATGTGCCCTCTCCTCCTTTGT------CACAGAGTTCCCACTGTTGTGGGTCCTATGGGGGCATTT-----TCTCCCTGACATCTGAAAGGATTTGAATTTCACTCTC-TACTTTAAATATATTTAAATGAATTGAATATA---TTTTCTTATAGTTCCCATCTATTAAAACAACAAGCACACAGCTCTCAGGGTCTCTGCACAAGCATATAACCAAGAGTTTATTTGGGAGATATGACT-CATTCACATCTCTGAACCATGGC-----ATCATTAAGAGGTCTGACAAATGTCAGAGAACTGGATGTGAGCTTCCTGCTGCTGTTTTCCCTTTTTGATTTCAGTCTTCTTTA---TTTAAAT---ACGTGGTGACTT-----------ACTGGAGCTCCAAGAAGATGTATTGGTAAAAGCTGAATTTAAA-TAGCACCTCATACTTTCTTTGTTTTTCCTCTTTTTGCATTCCCCCATTTGGCAGTCAGCATTGTGACTGAGGCTTAGATGTGCTT-TATTGATTTCAAGTAGAATTATTCATCAAGATGATTCTTTAACTTTT-AGCATCTATCAATGAAATTAAACATATTTTGCattttaaattatatatttatttatGTTCGTACTGGACTAAGAGGAGCATGGAGGTCAGTTTCAATCATAGCCTCTTTACTGGTGttaaatt----------gaaaaattaaatattaatcataaataataCCAGATTTTATCTGCTGCTGCAGCTCTTTTTGATTATCTATATATAGATGCATTGCAACATTATCTAGCAATCTGCACTTGCATTTTATTAACATTTATTCGGAATAAATTCTTCCTTCAGATATGAATTTGTTCAGTATGAGCAAAAGATCCTCTTTTGTTCCCTCCTGTCACTTAGCAATGAAGCCGACTATGAAGAATTATTAGGACAATGAAAATTAAGCAAGAGTAAAGGCTGTAATTCGGGAAAGAAAT---AAATTTGCAGTCAGAAGAGTGAATGGGGTTTGGAAGATTTATTCTGTCATTTAGAGTTGTCTGTTCCCTGTATAGTAACATCAGGCATCATGGTGTTGATGAGGACTTT-------GCCTCATTAATAGCATCTCTAAGTGGCCAGCTTTTCAGATCCTATGGGGAATG-TCTTTGTGTCTATCCTTTATCTCTGCCATGAATG-AATCAGCCACTCCTGGTATCTATCTATCAGCTGGAGAGACAGGAGTAGAATGTCCTGTCAGCCATGTGGATATA----TAGTCAAGGAAAGTAAATAAACACTAGG
s HiC_scaffold_1 142466814 1504 + 233722169 TGATTTATGACTTCATTACCAACTGGCAACTTTGCTTTTGCTTATGCACCTGAAGCTTCCTTCTGCTGTG-GAAATGACCCGTGGAAAATCCTCACCACTCTGCACTTTCACACACTGAGCCAGCTGTAAAGGTCCCTGAATGTGGTACTCAGTATATAATTTCAGTTATAGATAAAAGACTAGAAAATACAGACTAAGAGTAGATCTCAACCAAAAAGATTTGTATGCTGGagtgtttaatatattttt-----------catttacatagTCTTTGAAAGGTCATATCCTCTCTTATTCATAACACTGA----CCACTATGACACACCC------AGCATTTATATTTCTGTCTGGCATCTGATATCATTTGAATTTATTTCCCCTACATTAGATAAATA-GAATGCAAAGCTTATAAATTATGTTTATAGTTAGCATCAATGAAGATAATAAACACACAGCTTTTAGGGTCTCTCCACCTTAGTATAACAAAGAGTTTATTCTAGGGACATATCAACACTAACAGTTCTATCCAAAGGAGGCAAATCTGTAGAAGTTCTGACAGAGGTCAAAG-----GAAGTGGGTTTTCCATTTGTACTTGTGTTTCTTCACTTCaacctgcttttgtttttaatttttgcatcaTAACCTTATTCATTTGGGCTGGAGG---AAGAAGGTATAT-AACAAAAACTGAATACACACTAGAATTCCAAGGTTTCTTT----------------CACTCTTTCATTTAACAGGATCCACAATGAGTACAAGTTGGATGTGCTAATATTG-TTAAAAGTAGTATTGTTCACTGTAATTATCCATTAGTTTTTTAGCTTCTATCAATAGGATTATAGGGACTG-GTATTTTCAATTATATAGTTATTTGTACTCCTATTGGAGTTAGAGGAACATTGAGGTCAGCTTCAATCATCACCATTTTAGTAATGGTAAATTATCTggaattgaaaaattaaatactaatcataaataatatagaattttatcTGGAGC---AGCCTTCTTTGATTATCTATATATAGCTACATCATAACATGATCTAGCAATCTGTGCTTgcattttattaacatttattctGAATAAATTCTCCCCTGAAATATGAATTTGTCGAGCATCAGaaaaggttcctttttttttt--tgctgtcacATTGAGATGAAGCCTACTGTGATGAATTATTAGGACAATGAAATTTAAGCTAGAGTGAAGGCTTTAAGGTGAAAGAGAAGCCTGCAACTTGCAG------AAGTAAAAGTAGCTGGTAAGATTCATTCTCTC--TTGAAGTCACCTG-TCACAATACAGT-ATGCTAGACACCA--AAATTGAAAAATAGCTTCCAAATCTCCTCATTGACAGCATTTCTAAGTGGCTGACTTCTCAAATGTGACTGAGGGTGAACTTTGTGTCCCTCTGTGGTCTTTGTCATGGTTTCAAAGAGCTACTCATG-----TAGTTATGGACTGAGCAGGTAGAAACAGGCTGCTTTGCTAGACAGATGACTTTACAACTAGGTAAGAAAAGTGAACTAAACCCAGG

a score=25746
s chr3           155426759 602 + 160039680 tGCAAGTGCACACATGGTTGTATGCGCATGTGTTTGGCTGAAATTGTAGCATTTAAGCTTGAACTTTTCAGTTCTCT-TATGTGGCTTTTATAAAAGATT--TTTCTCTATCCTAAATC--AGAACTTTGCACTCTGTGCCACTTTTTCTTGTATTCTGTACAATT-TCACCTGATGAGAAATTCTGGTTTTATTA-----------GTTCCACACTGAGAAAATTTCTCCTGAGGACAGCCT-GCTCCTCATGGCATTTATTACTGTGGAGTAATCCCCTTTTGATTTAG--ACTGATAATGAACATTCACTCCAGTGCTTAAAACCCAGCCATTCTAGAACTAAAGCAAATGGGAGTAGAT-TGAAGAACTGAAGAAAGATACAAACAGTAAAATCAAAGTATTTGTACAGCTTCACTCTCCTTTGATTAAAGTTCCCCAGAAACCTACTTATATGAGAGAAGCTAAATTACTATAATTAGTTCTGAGATCTGCTAAGTGATTTTTACCTGACTGAACCAAGAAGAACGTTAAGTCTTTAAGTGATTGTATTTTTTTTTTACACTTATGGAAAATA-TATTTACCAGCTATACATTTTC------TTCCTTCTGACAAGCTTATTTTG
s HiC_scaffold_1 142472002 613 + 233722169 tgcgcgtgtgcgcaCGGATGTGT---CATGC---TGGCTAAAATTATAGTAT-----ATTAAACTCTTCTGTTTTCCCTCTGGGGTCATTAAAAagacttcatttttaaatcttgaatCTCAGAACTTTGATATTTGTACCATCTTACACTTTGCACTGTAAAATTATAAGGTAACTaagaattatgttttttttttttgcttttttgtcccacaaaaagaaattttctttgggGAATAGCCTTGTTCTTTATCACATTTCTTCTCTTGGAGCAATACTCTTTTGACTTTATTACTGATAATGTGTGCTCACACTCATGATTAAAACCCAGGCATTCTTGAACTAAAgcaaatggaaacagaaataaagaattgaaaaaagatacaaacagtAAAATCAAAGTATTTGTACAGCTTTACTCTACTTTGATTAAAGTTCCCCAGAAACCTACTTATATGAGAGAGACTAAATTACTATAATTAGTGCTGAGATCTGCTAAGCGA-TTTTACCTGACTAAACT---AAGAGCGTTAAGCCTTTAAgtgattgtaatttttttct-tacttgtgGAAAAAGCTATTTGCTAGCTACACAATTTCATGTTTTCCTCTGTGACTAG-TTGTTTTG

a score=20538
s chr3           155429629 1553 + 160039680 TATCAG-TTTATTTTCCAAGTAATTTTGCTTCCATGCTCGCTTTTGCCC-TATGTGTCTGTGAGCATTTGACTTACAAGGTGATATGCTTGAGTTATTGGATCACTGTAGAGTAATTTAAGGAGGAGCTGCACTCAGTAGACATGATCAAGCCATCACAAATCACATGAACCTAGGGTATGAAATCTGC-------TTCCTTTCTCTAACTATATAATATTGCTGTGTTTATTATAGAGGAGGAGATTTAGACAAGATCATAGGACAATATTTTTGCTTATGTTTATAATTTCATTATTACAATGAATAAA-TACTATTTTAAAATTCCAGTTCATGTTTTACAAAAGAGTTATAAATATATTATCTCAGTTGACCCCACAAGCATTCTAGCCATGGGGGGGAAATGG----TTATTTGTGATT-----GAAAATAATTACTCCTGATTCAGGTTGAGCAACTTACAAAATAACAACCACAATTTTGAGAGTATTTAATATGGTTTAGATGATGTCTAAAGCACTGTAATGTTTGTTTCATTACTGACTTGTTTATGTTCTCTCTCTTTTTTTCTTCCTGCTCTCTCCCATTGTTCCAGTTTTAGAGATGACATGATTGAAGCTCTGGAAACATTAGTGGCATAAATATTGCCACTGTGAGCATGGGCAGTGCAATG-GGTAGAATTCCATCCATCTGACCCTCTTGATCATCCTTGTCCCCAGCAGTGTATCCTGCCAATGTGAAGACACAAATGCAGTTCA-CATTAAGATCACAC---GCCTAGTAAATTGTTAGTTTCTGTGAAGAATAATTAGTTCAGTTTTCTTAGTGTATT-----------------GAAGAAAAATCTTGACATTTTAAGTAGGTGTGAAA----GGAATATGTTATAGAAAACTACAATTAACCTCATACTAG-AAAGTGACTTCATGTGATCAGTGCACACTTCCAACAATGCTCT-TCAGACAGATTGCCTCCCTTGATAATGTCACAGGCTGTGTGATTAACATGGCAGTTGGCAGAGCGCTGTGGA-AGGAGGCAAGCATCAGACACAATGGATGTGCTTCTGCTTAAGGTGTGTTTCTGTTCTGTTTGCCAGATGTGGTCTCTGG-------TTTCTTCTCCCTTTGCCAGTGGAAATTACTAATGGTTTTTATTTTATCTGGGCTTATTCAGTCACAGGGTTTACTCAATCCTTCGAGGTACAGGAAGCAACCTTTGCTTTTGGGGATCAACT-GATGTAGGGATAAAGAAACTTAGGGTCTACCCTGAAGTTCTGCCAACACTGGTTAAAT---AGGGAACCTCTTTTTGTCTTTCCTCTGGTCAC-ATGCAGCTACGAGCATAACTAGGACAGTCACAGAAGGATCAAACCAGCTGAAAGAATTCAAGACACATGA---AGATGCTAAAAGTAATCTCACTTTTCTAGTTTCTCTGCAAT-GACATCAAAAATTTTTGTTGCAGTAGTCACTGGTACACACCATATTCAGAAA-ACAAAACGAAGGAACAAAACCTTAAGAGGGTCCTTGCCCTTCCAACCTC----AATCAAAATTCATTTGAATACAGTTTTAGAATT--------------ATTGATTGACTGTC
s HiC_scaffold_1 142475658 1508 + 233722169 TATTAGATTTATTTCCCTGGGAAACGTGACTACAT-----TGTTTGCCTATATGTATCTTTGA-CTTCTCATTTTGTAGAAAATATGATACATTTTATGGGACATAGTTATTTGAACTGATGAGACATCATACTCAGAAAACAATAT---GTTAAGAAAATTCA----ACCTTACAGTATTAGTAGTGCATATTCCTTCCTTGTTCTTTTACTATAATACTTTTGTCTGTGTTAAGGAGAAGATAATTCAGGTAAGAGCAAGggtcagtattttt-----tatttttacttttaagattGTGCTTCACAAAATTATGTTTTGAGATGTTTCTTCatattttacaaaagaatttTGCATGTGTTTTCCCACTGGACCCCAATAGCATTCTAGC-----AGGTAAAATAGACTATTATTTATGATTCAGAATAAAATAACTGCTCCTGAGACAAGTTCAGAAACTTATGGAATAACAACCAATATTTTGCAAATGCTTAATATGTTTCTGACAGTGTCATGA-----------------TCATTTCTgaa--gcttaaaatattttcct-------------ctctCTACC---GTTTCCATgttaaagaggaagaaactgaggct-------------tagcaaAGTTATATGCTGTGTTATC-TGAACACAGAATTGTGATATAAATTCATCCTCCTTACCCTGAAGTTCATGCTCTTTTCCAATACTCTTTCCCAGTGGtgcaaaaatggaaatagaggtCAGCAACAAGAGTACCCCGTGAGGAGTAAATTGTGAGCCTCTG----AAGTAACTA--TTGTGTATCTTtgtatattagaaaaaaaaaaaaaaagaagaagacatttAACATTTTAGTTACATGTGGGAAATTAGGATGTTTTGGAGAAAACTGAAATTGGCCCTACACTTGAAAAGCAATTTATTATGAATCCTG--CCTTTCAAAGAGTAAGATATAAGACAATATG--TCCTTGAATGATGCCCCAAAC--TGCGACGGACAT-GCATTTAGTGGAATAGTGTTGCTAGGGTTCAAATAGCAaagagaa----------gctgactgaa----gttgcTGCCCTGCTT------TGGGCTTTCTCGCTGCTACTTTCTTCTCCTCATTCAGGTGGATATTGCCAACAGGTTTCA-TTCACTTGAGTGTATTCTATGATCTTGTTATTTCATTCTCTC------CAAGAGGT--CTATTATTTTAGTAGAACAATTGGATTtagaagcaaaaaaaatgaagattcatGCCCTATTTCTGCCAACACTGGTGGAGTAAGAGGATAACTC-TTTCAACTTTTGGTGGGTCACAATGATGCTGTGGTCCCAAAT-GAACAAATACAGGAAGCCCAGACAGGCAGAAAGAACCCTG---ATATGATCCAAATGTGATCAGTAATCTTGCTTAGTTGGTTTATTTGTGTTGGGCATC-AGAATTTTGACTCTAATAGTCAGTGAGATACATCAAattcagaaatacaaaaagaaag--caaaac------aaattcctttgCATGCCTACTtcgtaaatttaagaattgttttaaaataaatttataatttgttcTCACTAGCAATTAATTGGCTATC

a score=46538
s chr3           155433567 3392 + 160039680 GCAGTCAAATTTTAA-GTTCTCAACCTCTGGAGCTTCCATGTCTTGTTTAGTTATAT----AGCCATCTGAATGTTAGCATCCTATGGAGTACAGGTAGTAATATTTCCTA-GCTTATTTTTATCCTGACATTTGACACACATTAGGTAGCCTAAAGCAGACAGTCATGTTTCAGGAATA--ACATTTTCTTATTGCAAATGACCTTGGCTTAGAAGAGATGCTTGAATTGTCTTGTCTTTCTTTTCTTAAGTCTTGTGCTTTTTCTAAAGCCAA----CAATTATAATCTCTAGTTGACTGAATATATCAGAATCCCTCCAGAATGTTGCATAGAAATGCAAGAA----CTGTGTTGGCA-ATTAGGTGCAACACACCA-CAGGGAGGTAAAGACAAGATTTTATTCATAATTTT--TACGATACAGCACCATTCTTTATACATACA-ATATTGACATA---------CAAGAAAA------AAATATAAAATAATACTAGGAAACATAATATAAAATAATTCAAATAATTCACAGAA--ATGAATGTCTTAACAGAACCAGTTCATTGTCACTAACAGAGAGAAGTCTGGACTATAATTTCACTTGTCATAAAAT-AATTTTACATGAAAAGTATCTTGGGTACAATCTG-------ATGAA--TTGCTAATCACTAAAACAGAATGTCTTCAGCCTTGTATACAAATGTTATGTATGTGTGCACACAGTTATAACCTTGTACAAAATGTGATGTATGCATACTGTTATGGGCTTGTGTTCAAATGTTACATATGTGCACAGAGTTATAGTCTTTATAGCTAGGACATAACAGCAGTATGGAATCACC----CATGGTATTTTACATTTATCTCTGGCTTTTTTAACAATACCATGCAAAGGGCAGATTGTCTAAGACCTATTGTGGTGTCCTTAGTATTTCCTATCATCCCCTTTGCCT-TTAAAATTCATAGCATGATCACTCAAGGCAAAATGTTGATTTTTTTTCCCAATTGTTGATTGATTTAAAATTAGCCTAATTTTGAAAGTCATTTTTGTTTGTTTTTCTAAGATTTGAGCAGCTGTTTAAGACTCCCTACTCCACTGCCTTTGCTCCCCACTTTTGGTATATGAATAACCTTTTAAAACCTCGTGTGCTCAGTTGTTTTCATATTACTGGTGGCAAAATTATCACATCATGAAGATCTAGGTAGGCACTGAGGTCCA--GCTATGGAGGTTT----GAATCCTTGCCTCCCTTTGAGGACTAGAAACTCCAGAGACTTTGATGATGAACC------------TGTT-------GATAGGCACTTAGTTCTTAATTTAAAATTATTCTGAATTATTGATTGATGTTTGAAATGTGTTAA-CAGAACAAACATCTTCAGGTGGCATGTCTG-----TCTTTGACATCATTGATAAATCTTAGAATTAGCAAAACCTAACTA--TCTTGTTATTCC-CTAAACTGAAAAATAAAATAAATAGCCCATTTAATCTTAATTTCTGCTTTCACTTTTCTGGTATTTCACTTCTAATGTATGATTTTTTTTGAAGGTCTTAGCTGTCACTGTGGACCCCTGGCAATGGAACTTCACAAACTGGCTTTCA-CCCTAAGGTGTTTAGTGACATGGATTGATTTCTAAGT-CTATTCTGAGTGTGATGAAAGGGGAAG--ATAAGCGAGTA-GCTTTCAGAGTGTGTGCAATGGTTGAGAAC-AATAGCTTTCCATTATCTGATTGTTGACAAATTCTGT-TCTGGTCATTGCTATTCAAAACCTCCTCTAACT---------------GATGCATCTCA------CAGGTTTTGTGTTT---------GTGTATTCTGCTTTGCATTTAATCCAATGGCTGCGTTGGCCTGTGTCTTAATTGGAGTGTTGCCTGTAAGGTGTCAGGTGGCGATTCTCTGCCTCTGTGAATCTCGGCACACAGGACTAAAGGGTTATGAGAGCCCCACAGT-------CTGCCTCCGTGTATGATTCTCT----GATTATATTATCATTTTCCTCTT------------------TTCACATACCTAAACC------TAAGCACTTCTTTTTTGTTCTTCGATGTGTTCATTTTCTTTGTAGTTCAGCCTTTACTCCC----------------------TTGATTTAATATTTGCATTCAGTCATCAGTCCTGTATCCAGAGTTGAGT----------------------------------------------------------------GGCCACCCTCTTGCAC--AAGgcaggacaatcctcag-gtaaccttggactgacttagttctcactgctttattact---------agttgattccaagaataattgtgattaacaccctcagatacagagagcctggtaggag--taagcctggttctctgtgaggacag------gaaagaaca---ctctccactctgttggcacaggatgttgtaaggtataact-attgacaaaat--gacactcag-tgcatggacctatctgagatatcctatcagtgatacagctag---------gaccctggacagatatcttgaactttg-----atctactggcagcaatctatagatctcagtcgttacttcctgcatatctgtaattaacaaacacattttcttgtgatctgtggtatgggtaggtctccttaacagacacag--------------------------TATGCTT----------------TGATGTTGTGTTATTTGAATCTTTGTT---AGATGAGAGTTGAATGCACAAAT--CTAGGTCTCAAAATTAAATTAGAAGTGCTTAAACCAGACTTTGAATCTTGGCAATGTGGCTGCAGA--CTATAGTAATAATGGTTGTGTTCTAAAGCCCTTCATGGGCTAAGGAAAAACATGGGAGATTCTCCTCATAAAATTATTGCAATTTAATGATTACAATAATCAAGTATGCATACAATCATGGAAAATGTTATTTCCCATGAATTTTAGATGAATAGTCAGGATTATGAATTGGCTCTCTTGGCTTAGTTTGTTCATTGGAAATAGCAGCATAGTAATTTATTATTACTTATTTTCTAATAGTAAGAACATATATAAAATCTTTACTGGGATTTTAAACCAGTCATTTCATTTATGCAGACAAAAGTGCAGCTGAGAAATCTAAATATGTATTTAAATGTACAGAAAATCATTATTTTCCCCCCAAGTAAGCCCTCTATTATTCCTTGGAAATTTCTCTTTGCTATGTAATGGCTCTTTTGTTGGTGAGATTTTTCCTAAGTTATTCATTGACAGCTGCAAAACTGCTTTGCCAAGTTAAAAATGAAATCTGTATTTTGCAAGATAGTTATTTGTTAAACATGAGATGATTCATTTAGTTGCCTGTTTATAGTAGTTCTCAAGCAATGTAACTTTAGGAATACATTTTTATCCCTTCTGACTATTAAGATATCATTATATCCTTCCCTATTTAGGACCTTCCTCTCTTATGCCTGCAATATCCTCTGCAATTAAACACTATCAAAATGAGCTCACTATTTTTATTTTACACTCCCTTCGTATTCATCTTTAGCTA--------------TTTCTCTACTGACTATA-GAAATATAACCAAAAGAAAATTATGTTTTGGATGTCCATTTAAGAGGCAACAC
s HiC_scaffold_1 142478780 3351 + 233722169 GTAGTCTGATGTAAATATTCTCAGCATCTGAAATTGCCATATCTTCTCTACTAACTTCAAAATACACCTAGTCATTAGCATTTTGCATAAGCAAGGCGATGATATTGCTTACTTTTATTAGTGTCCTGGCATTCTTCACACATTAGGT---TTAGAGCAGAACATTATGATTTAGAAACACAAAGCTCTTTCATACTAAGTGAATTTTGTTCTGCTAAGA-GCTTggagt---tcatttgttttttcctatgt-------------tAAAGGTGAGTGACAG--ACAATATCTTGTTGGATAAACATTTCTGAATTC-----------TGTATAGTCTTGCAAAAAAAGCCTCTTTTTTCAGATAAAGTGTAACTGGCCATCAAGGAGgtcaagacaggaggaaatcagAAGTTTTAgcatgataaataaaaat-----atgcatacacatatgtgCATAGTACTTGTTCAATGAGGTTTCTTAGACAAAAGTGAGTTTCTGAAAATAGGG-ATGAAATTTTATAGTAAATGCTCTGAAGGATGAATTTT------GATTGAGGCCTTTATCTT-------------------CTAAAATGAAGCTAGGCATGAAATTAATTTtgtat----agtatttttt-taaaatctgggtaaaaatgaaaattactcattctttaaatagaatctCCTAAGCATTATGTGAGAATGT---GTGTGAGTcgatatggatata----------------tatatatatata-------------------------tatatatatatatatatatata------------aagatgaaAATGTAGTATTAGAGCACCACTCCATGATACTCCAAATTCAGCTTTCACTTATGCAACAACATCACA-AAAGAATCAACATCACAAAACAATTTTTAGTCTTAACAGTTTGTCCCAGAATTATTTTTACAGGTTAGGACTCAAAGCATTACCA--------------------------------------------------------------------------------------TAAGA----AATAGTTACATAACA----------------------------------------------------AAAA------------------------------GGCAATAATATTATCACA-----AAGAATGAAACTTGCACTAATGTTAAAAGGAATGGGTgcttaagtgatttttttttttccagtgagaaGTAGAAACAGCCAAGACTGAGATGATAAATCCCCAATAATCCATTTTACACAGAGAAAGGCACTCAAC----AATTTGGACTTACCTTGAATTATCAGGTCATGTCTAAATTTAGTGAAACATAATAAGAGATTTTGAGTTGAATTTCCAGTAATTCTTCAGCATTACTGATAAACTTTAGTATTAGTAATAGGTAAAGAATCCTTATTACACTGCAGAGCTGAAAACAAAGCTAAAT--CCTCTCTAATTTTTGTTCCCAATTTC----CTCTAGCATATCCATTTTAATGTTTATCTTCTGTGGAGTGCCTTGGGTGTCACTG---------AGCTATAAAACTTCATGATCTAGCTTTTATCCCTGTGGACTCTTGTGGC-CAGATTGATTTCTAACCACTGTCTTGAgtagaatgaaagaagaaacaagaagtgAACAAGCTTTCAAAATGCGTGATAAAGCCCAGAACCAACAGCTTTCTTTGTCCTTACTCTTGGCAAACCCCATGTCTAGAAATCACTA---AAAAGTTCCCCTGACTACTCAGGGAAGGGACGATTCATCTCATCTGTTCAGGGTTAGCGGTCAGCTGTACAGTGAATGGTGTTTTGCATTTACTCCTGTGACTACATTAAATTTTGGTTTAATTAGAGCATTGTATCTAAAGTGCTAGGTCGTCATAGTCTGCctatataaattttgaaagactgGGGAACAGG---ATGAGTGTGATATATCATTGTTActgccatcattttttttttcataaagggcaatatcttctctttctttttcccttactTTCATTGAATTTCACACACTTAAACCAACACTGAACCATCTCACTTTTACTCTTCACTTTCAACAAGTTCTCCGATTCTTGCCTTTTATCTCCACCACATCTGAATTCCTACTTCTTCATTTATTATTGCTATCAAATCATCAATACCCTCCCAAGAATGAGGTCATGTGCAAGTCGGTCCCTTGTGGTAGGCTCTAATCGTGTCAGGcactattttaaatacttttagaCAACCCTTTCTAACTACACGCACAATAGTTCTCAATGTGAACTTGGTCCAATCAGAATCTCAAACCTTTCTTACTGTAGCTAGAAGAGTATGCTAGGAATG--------CAACATTGTGAGAGACAAAGAGATTTGCAGTATATTAAATCCCTGGCTGTGTAATAACCATCTCCAGAAAGAAGATGCCTTTCAGTACTTTTGTCTCACAA-GTCACATG--ATACCTGAGTTACAAAACCAGGCATGCAGCTTCCTGGAGCCAT-TCAGCTAGC-TACAAATAACACAGGTGAAGTCCTATTGTCTCTGAGAAGTTTTCTTGGGTGTTGGGGAGACACACTTATAATAAGTGCTAggcttctgttttctcttcatgCTTACCTGTATGTAACAAACCAGTGTG--TGCAATCTGTTGTACGCATGAGTGTTGTTACTGGGCTCAGACAAGTGTGCAGCTGCATATAGCACATTTGCTTCATACTACCACTGGATTCAGGCTCTGCCATTAGCATCCTCAGTTACAAAGGAGAAATTGAGGCACAAAGAACTAGGTCACACAGCTAGAGGAGAAG------AATCAGATTTTGAACGTTGGCTCTGGGGCTGCAGAATCTGTGATATGAACACCTATGC-ATGGATTCTTTCCCAGACTAAG-AAAATCACTGTGGTTGTTCTCTCCAAAGGCCTTGTCATTTAATGATTACAATAGTGAGCTGTGAGCACAACCTTGGAAAATATTATT-ACCATAAATTTTACATGATTATAAAGGATCGGCAATTGATTTTCCTTGCTTACTTT-TTCACCGAAAAGAGCATCAAAG-GATTTATCTTTGGTTATTT---AATAGAAAGGGCCTACATAAACTATGG---GAAACTTCAAACCAGTCATTTCATTTATGGAGACAAAAAAGCAGCTGAGAAATCTAAATAGGTATTTAAATGtactgaaaattattattttttcc-----taag-----tattATTCCTCTGGTGTTCCCCTTTTCCAAGCAATGGCTCTTTTGTTGCTAAGA-TTTTCCTGAGTTATTCATTGACAGCTGCAAAACTGCTTTGCcaagttaaaaatgaaatctgtattttgtGAGATACTTATTTGTTAAACACCAGATGATTTATTTAGTTGC---------------CTCACAAAATATAACTTTAGGAATGTATTTTTATCTGAAATGACTCTTAGGAGTTTATTATATTCTTCCACGATTagaatttgatttttccttttctgtaatatCCTCTGCAATTGAACACTGaaaaaat----tccttatttttttgttttgtttcctttatatCTTCCCTTACCCAAGTGTTCACACAATTCTTTTCATTTACTACATTAAATATATTGAAGTGCAAATAATCTCTTGGGTGTCAATTAAGAACTGAACAC

a score=13426
s chr3           155438646 1810 + 160039680 TGAATGATACATAG---AGGAT---ACAGGAGCAG---------------GTTTCTAGAAGAGTAGAGGCTT-TAAGTTGTCCAACTTATC--TCCTGCAAGGAAAGTAATATTTTATAGTAGA--GTTTTAATATTTCACTAGGGATATGAC--TTATTCAAATCTATTTGTTCCTGTGAACTAAGATTTGGGATAAAAAACAGGTTCGGGCAAATGTGAAGTTATAGCCATAACTCAGATTATCCCTGGGGTTAGAGCTCCTCCTTTCTGTTTCTCACCTCCTATTGTTCTATTTCTATCACTATGGTAACCATG-GAGCAGATGTGGTCCACATGTTTAAGTGAT---AACACTTTCCCTCTTCCACTAACCTTTC--TTAGTGCAGAAGCTGAAATTAT-----TAGACACTTCTTGTTGAGAGGGCAGAGGTAGCTAACCTGGATTTTAATTCCTAGTTAGCATGTTACAATCTAG------------------------GCCAAGTTTTCTCTTCTGTAACCTGGAGAGATTAGATATTCTGCATCAGTCATACTTTAAATGTGTCCTAGATTCCCTGCATTCATTGACATGTTTTGGACTGAGAAGCTGAGAGTTGGGAGTAAAGCAATTAGGATAAATATCTCACTTACTCTTTATAAAAAACAAACTAACTAACTAATCTAGAACTTCTTCCACCAGTTGT-------TTGGGAGACAGCTCTC-TAGGCTCTGGAGTGGGCATGGGAATAGGGAA---------------GGACTTATAGAAATCCTAGAAGAATATACCAAGATGAAGAGGGA---------------ACATGAGGGTAG-------------------GTAGGTCTATGAT-----TTCTGAATAACTGAATACTGAGAAACTGAAGATGTGGGCTGAATTCAGGCTTCT-----GTATCATAGTGTGTTTACAGACATTGAAAGTATT-----GTAGACAACCAGAGAACAAGGTTTCAGCATCTTGCACTGGCTAGTTCACAA-GGTAGATATAAATGCTTGTATGTAAACCATCTGAGGCACCTGCT---------TGAGTAGCCCAAAGCAGACGATCTGGAAATAACAGGCCAATGAACAACAATCCAGCAGCAATGAGAGAATGA-------------------------------ACAAGTGTAGCACCCCAGGCAGGTGGTTATAGACAAGT---------GAAGCTCATATATGATA------------CTCATGCAACCATTTAGGGAGATGGGGTCAGAACCCTGACCATGTGTATGTGTTCCATAAATTCTGGCAATGATGCTGAGTAAAAGTGACAATTCCCACTTCTCTACTAAGA----------TACTTATCTTCTTCCATCTTATTGCT---CTGTCCCTGTGACCT----TGATTGCACTTATTCTTAATAGTGTA-----TCTAGGATTTGGAGAAACAG-----------------TACCACGCATGTATTGACCTGAACCCCACAAACAGTCAATTCTAGT--GTATAAAGTCATTGAGGTTTCTGAGTTTGTCTGTTCCCATTATATAAGCTAGATC-ATCCTGAAAGTTGTTGAGATTCTA--TTTGCATTTGGGAAGTTTTGTTGCATAGTTGATTCTCTTACTCAAAATTACTTGCGCAG-------AGACAGAGGTATTCACAGATGTGGAGGGATTTTAAAATTTAGAGTGATGTGCTTGTCCCATTATTATGGAAGGCATGTTTGGGGAcactgatgctcaaactttagtatatgtatttattaactagagatcttgttaaaatgctggttctgacttaACCCATGATGAACACTC---AGTGATTTGTACTCCCTCTCAAGGTTACTACCAAGCG------------TATAATGTAACAC-TGAAACAAAGTCTGCGGTTGTACAGGGAAAGTCTATGTCGCTTAACCTTGCAAATGTTTGAGGAG-AAAAATATTGAACTG-GTAGTTATGATAAAATATGAAACAGTGAGTCATGGGTTGGTTCCTGTGAGGT
s HiC_scaffold_1 142483285 1978 + 233722169 TGAATGAAACATAGTTAAGAATCAAGTAGAAGCAGAGACGCTTACAGATGGCTTACAAATGAACTGAGCCTTCTGTGTCTCCTGACCTATCCCTCCTGTACAGCCATTTGATCTTTTCAATAACCTATTCTAACAACTCAGTGAGGATAATACATTTCCCCTTAGTGATCTGGTACTGTGACCTAAGGTTTAGGATATGAAACAGGTCCAGTCAGATATGAAAACTCAGCCAAGCTCCAGAATATCTGTGTGGACAGACTTCCTTTCACCTTTCTCACACCATCCACTA--CTATCTCAAAT-CTACAGCCACCATATTTATAGATGTGATTCACCTCCTTTTGTGATGCCAACAGCTGCCCTCTTCCACTAATCTGCCCTTTATCTCTGATG-TGAATCAATAGAGCCAGATACAGTTAGCTTGGAAACTAGACACAGTCAGCTGCAGTTGCAACCACCATTACATATTTCACTGCTAAGTGCCTTCGTGAAAAAATACCTGGAGCCaaattttctcttctgtga-agGGAAAGAGTAGAAATTCCGGGTAAATCTGAGAGTGGGTATCTCCTACGCCTCCT--------------------AACAGAGGAG----AAAATGCGAGAGAAACTGTC----------TCTGCTTTCTTCCTGATAGAAAGCTCA---------GATTGTGGAATTTATTCACCAAGGAGTGAAAAACCTAGAGAACAACACTCAGAGATGCAAGGAGGAACACAGCCATGGAGAGTTCTCCAGTTATCCCGGGC-TACAGAGATC-----GACGTGACCTGAGATGGTAAGGCGAGTTACCATTACATTACATCAGCCTAACATTCACGTTAATGTGTTtgtaggttt-taatttttcttctacatGATGAAGAAAAGAGAAGCTGAATAGATTGTTAATATTTAATCTTCCAAGTGAGGTCTTAGTGGGG----AGAAACCAGAGCTTTCTCTTAGCTGACAGCTGGAGACTGATATCTTGGTGACTTTCACTTGCTAACTCACAAGGGTAAGGACATTTGCACATGCATCATTCACTGAAGGCCCATAGTCACTGGAAGTGAGCCCCTGAAagcaga-aacatgaaaataacaGACTTGTTAGGATGGAtctggtgagagagagagagagagagagagagagagagagagagagagagagagagaaataaaggactCCAAGTAGGTTATCGCTAATGAATCTGAAGATGAAagcttgaataaaataaaacctatgaGCCACATAAGAATATTTAGAGAGTCTAGAACAGAACT---------------TAATACACAAAT-------AAAACAC-----AGAAGTGACCTTTGTCATTCCTAGGTTAATATGGAAAACAGTGTTGGACCTCTAtcatcttcttcctttcttgtcacAATGATCTTAgatgatatttctttttctaaccaATGGAAAAGCTTTAATACATAGGAAAATAACTTGTCTTATATTAAGTTACAACATGTatatggaaaaaaatcc--aaaactgaaatttcttcttcttattaAGTCATTGAGATTTTTGAGTTTGTCTATGACCACAATGTAATATGGAGCTATTCTCACAAACACCAacattttgtctttgc-ttttgacAGTCTTACTAAATAGTTTGTTCTCTTGTTGAAAG------GCACAGAAGTACCAGGCGATAGTATCTTTAAATTGTGAGGGACTTTAATATTTACCGTGATGTACTGGTTCTGGTATTCTGGAAGGCAAGTTTGGGG-CATGATTTCTTAAACATCAATGGGCCTACACATTAAGTAGGTATCTTGCTAAAATTCTAATTCTGACTCAGTGCATTTTGAAAAATCTTACACAACCTATA-TTTCTAGTAAGCTTCCTGCAGTGCTAGAGCTATTGACTGTTGGGTGACACTTGGAAGGAGGCCTTAAGAGAATCATCGAAAGGAGCCTTCACCTGGCCTTGTGAAAGCTTGACAAGTCACAGTTCTGAACTGAATTGTTAAAATAAGGCATCAGGTGGCAAAGCTTGGGCTGGTTCCCCTAAAAT

a score=9941
s chr3           155442303 553 + 160039680 TGTCACTGTCTGAAGCATGAACACTTTTAGTAATCCCACACACTACCCTGTTTATTTGCTAGGTATACATTCACATCTTTTTTTTTTTTTGAGATTAGAAAAGCCACATTTGCTTATTTTTTTCTAAATCAAATTAAATGTGTTTGTTAAATGACAGTTATCAATCTAGGGGTATTCTTT---CTTGAACTCAGGATGGTCTTTTTGGTTTTCTTATAGTTATTTGGAGTCCAAAGACTTATAAGATGGCTGGGATA-AAGAAAATACTCATTTATATTTATCTATTTCTCAATACTATTGA-ATATTTATTTTCACTAATGATGAAGCATATTTCATTCCAACAATTCCAA-ATGTTCAAATTCATC-TTGAGATGGAAACTA-CTAAATAATTTTGAGGCTTTATATGTCCATCATGTAGAGATGTTTTTCTGATTAAGTGAACTCTCCAAA---ATCCTATGAATTATGACGGCAATATATCTTATTTAGGAA-TCGAATCCTCAATACACACATATTATGCTCAC---GTTTGGGAAAATCTTTTCCTC------AGAAAGGAAATGCAG
s HiC_scaffold_1 142486125 557 + 233722169 TGTCATTATCTGAtgcatgaaaaattttaataatcctGGAAATTGTCCCACGTATATGCCAGA-ACAAATTTTCAA---TCATCATGTCTGAGTTCAGAAATGCCACAATGGTTTACTTTTTCCTAAATCAAATTAAATCTGACTATGAAATTACACTTATTCATAGGGTGAGAATTTTCAAACTTGAACTTGGAGTGATCCCTTCTCCTTCCTCG-GGTTATCCAGAAGTCCAACACTGACAAGGTcacaagaaaatgagaaaagaatcatTAATTTTCAGCTCCTCATAGGTATTATGGAGGTGCTTATTTTC-TAAACTAGGCAATGTATTTCACTGAGAAAACTTCAAGATGTTTATGCCAATCTTTGAGACTTATATTCTCTGGTAAATTGTAAAGCCTGTTAT--------TTTATGGCACCGTCTCTGGTTcagtcttctctctctgtctctcctatGAAGAATGAAAGTGATATGCTTCATTTTGGAATTCTAGCACTCAA---aaatgtatttgtctttctgatttGGGgagaatctttttcttctttaaggaGAAGAAACTCAG

a score=29850
s chr3           155456582 1637 + 160039680 TCTGAGATAATTGCATAATGGGGCATGCACAGATCAATAACGCTCG---TCCAAGAAATCCACCTCGACCTGTTTGTA-----------------ACACCATGAAT-------------GTCTGCAACAGGGGGATGGATGCAATGCCTTGTTCATTTGGC---AACCAGCAGATAGGGGAACTGCTTCGCAGTCCTGACAAGCCCTGGACTTCA---AAATGGTGATCATGAGCTTCCTGTGCTGTACAAGTCTACCCACTACAGCTGGAGAACAAGAATCCTACACTTAAAAATATTGTGCCTCTGCGACTAATTATGCTTTTGCAAACTTAGTACAACATTACTGTTTATTTAAACTTGGGCTGCATACGCTCTTCCTCCAGTGAATGGGAGCTATTCTGAAAACCACACATAAACATCTATTTTGTAGAGAAACCAGCAATTAAGGACTTGTAATGAATTCTAGTCTTTTTCAATCTTTTTCAAAGAATACCATGGAACCAGAGAAAAATAAGATATGGGGATTCATTTAAGAGTGTCCTGTCTTTTTCTG--TTGAGTT----AAAAAATAATTCACTTTTATATGCATTTTTCATTTTTAAGTTCATTTTTTTTCTTTGGAAATTGCAACCCAAGACTCTCTGGAAACACTCCACATATAATTAT-ACAGCTTAAATATCTGTATTATTCTAGATCAGTAAAATTCTAGAGATATTTATATGGTGACA-------------------------------GTGCATGTCCGTAG--TACAGATTTGCTTA-------------ATCCA---------AGGAGTATATAAAAATGTTCCATAAATACTGGATATATTTTATAATGTGTAAATGTAGCCACAAAGCATAAAGTCCCGTA-----AAAT--------TCAGGCTATTTGTAGACATAATTGACAATATTTTGCTGACACATCAAGTAACATACATAGCTTCCTATGGGTTAAGACA-CAGTCAAAAGAATATATGGCTGTGTGTATAGCAAGGATCCTATTCATATAATAGAAATCAGCGCCAAATGCAGAGTAAGAAGTAACTAGTGCAGGCAGAGGGATCCATACACCTGATCATTCCACCTGGAGAGGGCTGACTGTTCAGACACCTccagagtgcaagcatgggacaggcctaggcccttacacatatgtaacagatgtgcagcttggtcttcatgtgggacccttaatgactgtagctgactctgttgtctacctttggatccctttctcctaactgggctgccttgtctagcctcaataggaaaagatgctcctagtcttactgcaatttgatatgtcaaggctggttgatatccatgggaggataaagggaggtggataggagaaggtaagctgagggggaaggactgggaggagaggagggtggggaatctgtaatctagatataaaatacattaatcaatTAATTAATGGAAAAGAAAGAAAACCCCC---TTCCTGTGCTCAGTGAAGGCCCCTGAAAAGGTCAGGTGGCCCCCAGAGCCTCCTACGGTGATCTCCCAA-------------GTGGCAGGCCTTTTATCTCCTGCAGCTGTTGGTGCTTTCTTGATATCCTGAATCATAAAGAATTTATAAAGCAAAGATAAGCATAGAGTTACAAGAGTAGGGATGACTGTAGCCTCCATATTCTCTCACTGTAGAGTCTCTATCCTTGAATTTCAGGAGTGTTTAAGGTTGAACTGGATTGCCA
s HiC_scaffold_1 142505270 1427 + 233722169 TCTAATATAATTGCAtgacagaacaaatacaaattaatgcTACTGGGCCTCCATGGAATCCATCTTGAAGTGTTTGTATGCACtgctgaacaacaacaacaaaaataaaggtagCAGATGCCTCTATCAGTGAAGAAGTGGCAGGGTATTGTTCTGTTTCCGTGAGCACACACACAGTAAAAGTGCTT-----TTAGGAGAATGCTTGGGCCATAGTGAGTTGGTGATAAGCTGCTTCTCAAACT--ACAGAGCCAAATAGTACAGCTGGAAAAGAAGTATTTGACGCTTAAAAATATTGTGCCTCTAGGACTAATTATGCTTTTGCAAACTTAGTAAAACATTGCTGTTTATTTAAACTTCGGCTGTACAAGATCTCCCTCAAATGAATGGTAGCTATTCTGAAGCCTGCACATAAACATCTATTTTGTAGAGAAACTAGCAATTAAGAACTTGTAATGAATTCTAGTCTTTTTCAATCTCTTTAAAAGAACACCATGGaatcagag-aaaataagataTGGAAATTCTCTAAAGAACAGCC---CTTTTACTGACTTCAGATAGCAAGAAAATACCTTATTTTTCTAGG--------AGTCATATGCCTATTTCCT----------GTTACAATTCAAAATTGTCCAGAAGGACTCCATATATAATCAGAACATTTTAAGTCTCTATA-------AGATCAGTGGAATTCTAGTGCTATTTCTCTGTGGACATTCTTCATGAGAGCCatgattcttctttattttataagtTCATTGGTTATAAGGAtacttaaattctttaaaatatccaGAACATATCATGAGTGTGTGAAGATTTTCTATCAATATGGGATTCATTTTATTACTTATAAATATATTCTCAAAATAAGAACTCCTATGTGTTTAAATGTTTCTAATAAGGCTAAtaat-gata-aagaaataaaatcctgTTA--AAATTAGATTTCAGGTGTTCCCTTTTATG---TGAGCTAGTAGATCAAAAAATATATGACTATTTGGCTTTCCAGGTTCATATTT-TATAACAAAAGTCATAGCCAAATGCAAAGTGAAAAG--------------AGAAG-----------------------------------------------------------------------------------------TACATTAGACAGATGGGTA---------------------TTTGATAACTGCATCAAAC---GTTTTACAC--------------------------------------------------AGAGAGGCCCA-----------------GATATTTCAGAGATGGGGGACAT---TGTGATGGCA--------------------------CTGA--------------------------------------------------------------------AATTACTGG------TAGGAAACCCTCATTTTTCCACATTGAGTGATTGCATGAGGAAAGGTCAGCCTGCTCCTTTAGTCTCCAATGGCATTCTCCCCATGGATTGCACATGGCGGAAGGTCTTTTATCTACTGCAACTGTTAGAGCATTTTTGATATTCTGAGTCATAAAGAATTCATagggcaaagaaaagcaaacaattaCAAAACTAGAGTGGGCTAAAACCATAGTATTGCCTCATGCTAGATTCCCCTGCTTTGAATTTCATGAGCGTTTAAGGTTGAATTGGAATGCCA

a score=11019
s chr3           155459794 435 + 160039680 AAATGCTTCATCTTCACAATCAGTTTTCTTCTGAGGAATGCCGTCCC-TGCGTGCGACAGGACGAGAGCTATTGGCTCGTTCAGAAAGAGTGT--GAAGACGGACGCAAGAGAAA--CAAGTCTTGAGAACTGCAGTCTAGTCAGGTGTTGCTAAGGCAACCGCTGCTTGATAATAGTGTAGTGATAGGAGAGAAAAGTCAATCTGAGGAACAAAGCCTCTCAAAACCCAGAGAAGAAACAAAGCCCAGAAAACCCAGACGCAGGAGAAATA---------------------------------------GTGTGCAATGGCCATGAGCTGCGTCTTCATAGGCAGCAGAGTGATGGATGGAGCCCAACAGGAC----AGAAGCCTGCGGAATTGAGAAGCCTGCAGAATTCGGGCGCTTTTGCTCTCTTTGCTATCTCACAGCCTTAAATTCTCAACATTAG-TCCATGATGCTCTTAAAGG
s HiC_scaffold_1 142512620 465 + 233722169 aagtgtCTTGGCTACACTATGAGTTTTCTAATCAGAAATGCTGTTCTGTATATCTATTAGGA--AGAGCTTTCGGCTGTCTTAGAAAGCTTATCTGAAGACTGGCTCCAGAAAAAAGCAAGTTTTGAGAGTTACAGCCTATTAAAGAGTTGCTAAGGCAACCATTGCTTGATAATAATGCAGtgatagaaaagaaaaggcaatttGAGGAACAATGCTTCTCAGAATTCAGGGGCAAAATGTAGCTGAACAAACCCCCAGTtagaattaaaacacacacacacacacacacacacacacacacacacacacacacacattggctATGAGCAGCTTCTCTCTTG------AATTAACAGAAGGAGC----CAGGACCTGTAGCAGCATGGAAAGGGAAGAAGGC--CAGGGATTG-----TTGTGATCTCTTTTCAGTCCCTTTGCCTTGATTTCTCATCGTGATCTCTTTAATACCCTTAAAAG

a score=50278
s chr3           155461499 1663 + 160039680 TTGCACACATGGATTCCTTAACAACCAGTGCTGCATTCGGAAGTCCCAGATGTTAGAACTATGTTAGGGGAAGCCTCTTGTCTACAAA-CTGATACTCACCCTTCACCA---GGCACAGATGGAGGTTGCAAACAGTGCTGAGCAAGCAAGCTATACAATGTTAAAAAACATATTTAAGGCAAATCTGAGAAGTGACCATTCCAGAGAACAAAATTTATGATATTTAATTAAGAAATCAGCCCTTACAGATCTCATTTTGTGCAGTATTTGCTT--TTCTAACTTGATTGATATTTATATGATGTTTAATGGTCATATATAACCATAGGCTTCAGATATATTTGCAAGTTTACAACTGCCTTGATATACATATTT-TACAATAACATATTATTATAAATACTATGAAAACATCAGACAGATAAATGGTCAGGGAGATGTGCCCATGCTTCTTGGTATTT-------ATAAGTAAGTGGGCTGTAATGGGTGCCATGGTATCAATCTTCTCAGAGGCTGTTTACATTGA-ACAATGCTCAAAGGCCAAAGGGGAAAAC-AATGTAAAAGTTCTGCTTCCT-GCGACCTCACTGAGTAATAAGCTCCAACTAAGCTTGGATGCCGGCTCACTTTTCATGCAGCTGATTCGGAAAAGAAGCAGGAGCGAACTGCTGTAGAA-GACATGCATGATTTCTCCAGGAAAATCTTCACACA-TTTGTAAAGTCAGATGTAAAATGCCTTTACTTGCCATCCTTTACTGTTGCTGTAAATCAGTGC--CTGGAGCATG--GAGCAGTGTGGG-CTTAGAAGTGAAGGC--CCAGCCTGTGTCAAA-GGGCCTTTGAACTTACCTCTGTAGCAAGTCCATTTC--TCACTGAAGT-TTTGCCTATAGTGTAAGGCCACCTCCTATAAATGAATGTGTGCTGCATCCGTGTCTATCCTGTCAAATATCAAATATACA-------------------------GTCCAACA-------GCTAC-----TCTTGATTTCTGAGTGTTTGTTACTATCTTTCAAAATTACCATCCTGGTCACTCATGTAAAACA------GTGTCATGTTTCTCTGAGAAGTCGGGCGTGATAGTAATTAAACTTCATGCTTCTTCCAGGAACATTTTATTTCAATAGGTTTTTTTTCTTCTTCTTCTTTTTTCTAAGTCAGCATATTTTTTCTTATCCAATTTATTCGGAAGAAGGAAACAGGATGGGTCTGTTATTTAACCAAGCT-TTTGGTTTACAC--TGCAATTTGAAAGCTCTGAACTCTTTCACTTCTGGTGTGCGGTGTTCTCCATCTCTGTCAAATCCTT-CAAACTCTCTCTCCATTTCTCAAGGACAATTTCCTTCAGAGCAGTAAAACATACAAGACTAATCCACATCACCCCGGAGAGCACGCCCTGTGCACTGCAGGG--GAAGACAGCTTTCCATCACCTATATTTGCTAAATTTCAGAGCTGTGGTTTAAGAGACGTGTGACATTTTATTAGCTTTTGCAATTTACCTTTGGAGGTTTAAGCAATTTAGT-CAGTCAGGACATCCAATCTGGTGGCAGTGGGTGCTTTCTCCTTCTTGTGCAAATTTGCCTAGCTATTGCTTTCCATATTTATTTACTT----AGTCATATGAACtgtgagactctgtgaaatgtatccttggtctttgattcagtt----tcctttcttgac----agctctaaaaacagttgggatctc
s HiC_scaffold_1 142516990 1711 + 233722169 ttTCCCATATGAATTCTTTAATTGCTAGGATTGCATCTGGAAATCCTGTATGTAAAAACGA-GCAAAGCAAAGGCTCCTTCTCACAAATCCGACAGTACCCCATTATGATGTGGCACAGACAGAGGCTGCACAGGGCACTGAAGCAACAGCACCAGCAAC-TCCTGAAACATCTTTAAGTCAA-CCGAGGAAATGATCAtcctagaaaaagaaatttaaaatatttaaggaatagCCTGGCAATTTAAGACTTTCTTTTACACAGCCTTTTTTAAATTCTATCTTG-TTGGTTTTCATAC----TTTGATC-TCCTCTGTG-TCATAGACTCCATATATATCTGCAATTTTGCAATTGTTGTGTTATCCATCTTTACCCAAtaacaaatatatttgaata-tgtaTACACTTGTGAAAGTCAAT------GTAAAAATAACACATGGTTCTTGCCatttcataaaaaaaaacaaataggaatTAATGGGTACAGTGATACTGGTGTTCTTGGGGACTGTTTAATTTGGGAAAATGCTTAAAGGGCAAAGgaaaaaattgattaaaaaatcCTAATTCCCAGAGACTTCACTGAATAATGAGCTCTAACTAGGCATGGAAATTTGCTCACATATTATGCAGCTAATTTAGGAGAGAATGAAGAATGGACTGTTGTAAAAAGGCACACATTATTTCCTCTGGAATAGCTTTAAATAGTTTGCAAAGTCAAATTTAAGATGTTTTTAATTGCAGTCCTTTATTGTTGCTATGCAAAAACGCAGCTGAAGTCTGCTGAGCAGATTAGATCTTAGAGGAGAGGAATGCCAGTTATTATAAAAAGGGCCTTCGAAGTTACATTTTTAATGCATACATTTTCTTCAGTAAATCCTTTGTCTTTTGTATAAGACAGAGTCTTGTAAGtgaatttgtgtttcttctgtgtCTATCTCATTACATATCAAATAGTCATAATAAATAGTGCCAAAAGGAAGTCACCCATCATTGCATTGCTACCTTCTTTTTGCCTTCTGAATATTTATTAGTATCTCTCAAAGTTACCCTCCGGTTCACTCATGTAAAACATTACTAGTTGCAT-TTTCTCTG-TAGGTTTCACACAGTAATAATTAAATTTCATGTTTCTCCAGGAAacatgtt-tttcaata--------------------tttttactaAGTCAGCAA----TTTTTTATCCAATTTATttggaaagaggaagaaggatgGATCTGTTATTTAACCAGGCTGTTCCGTTTACATAGTGCAATTTAAAAGCTCTGAACTCTTTCATTTGGAATGTGCAGGGCTCTCCATCTATGTCAAATCCTCATAAACTGTCTCTACATTTCTCAGGGATAATTTTCTTTGGAGAAGTAAAACATACAAACCTAATCCATATCACTCAAAAATTCATGTACAGTAAACCACAAGGTAGATGGCTGTGTTCTGTCACTTAAAGTTGCTAAATTTTGTGACTGCTATTTAAAAGTTAGTTGACATTTTGTTAGCTTTTGCAGTTTACATCTGAAGAGTTAAAAAATGTAGGAAAGTCATGGAATCAACTTTGACActaagaatttgttttccttGCTAATGTAAATCTTCCAAGATGATATGAaccatatttgtttgtttattaaatcATATGAACTGTGTGATATGGTAAAATGTATATTAAGTCTTGGGCCCAGCTGACATACACTCTTGACATAAAGCTCTAAAAGATGCAGGAATCTC

a score=63873
s chr3           155484026 3221 + 160039680 TCATTTTCCTCTCTTATGAAGATGAAATATATGTGGTATCCAAT--TCAAATT-TTATAAATATCACTTAATATAATTGGTATCCAAAAGCTTTGTTCTAACTCCAAAGTATTAGA----AATACAAGATGTAAGAAATATCCTCCACA-AAACTATTTGTTAATTCAAAAGTTTTTCAGTACTTAACTGTTATGAAAAGGAAGTTT--ACCTATATT--CTGAGCCATGGTTTTGTGTCCAGAATACCATTGGTGAGATATAGTTTCCACTGGGTATATTAGAAGCAC--TCACCCTTGCTACCATTGTGGA--------------TAGCATACAGCAGGACTTGACTCCATCCAGCTAGGGCATGTT----CATGAAAATATACCTCAGCTGCCCACCTACACAAATCTGT--------TGCCTTCATATAGTCCAAACCTCTTcacttctaacaaatggctcatgcatttggaatttagaagtaagaacttctcaattagactccatataactctaagcttcaccttgcccttggcgatttctggagggtagactgcagtg-tgtggatcttacatcacacctgaacatttcttattgtgtgtcctgttttgtttccttcctcattatactattg--atttcaatgaccttcactaattacctccccacttgttttcatccatcttggagtctatttctcTCTAACACATAGGAGTCAAATGAGAACAGAGAAAAAAAATACAAGGAATAACACTATTATTTTACATATCCTTTAAATCAACAAGACA-TTATGTCTATCCAGGGATAAT--AATGAGGCCTCAAGTCTCTACCAC-ATGGGGTGAT----AGACTGAGGGTACATTGTGTAGTCCACTACTCAGAAAATCACATCTCTGGAGATCTAAA---TGTCTAAACTGCTTGACACATGCTCACTC---TCCTTGTTTAGCCATC-----TAGGGTTACACGGTGACTGCACTTTATGTTATATCACAGTCTACTCAAGAAATGGATTGGCTGTCATGGGATTGAGACAGAGTCCCCATAGCACAACATCTTCTTCTACACAAAGATA----GTCTCAGCAACATCTGTTCTGATTTGGGAAACCATCTGACCTCCCTTTCTGTGGTAACTTTTCTGTT----TTATTTATTTTGCTTTCCATGTGTACTACTCTCATAACTATCTGGATATCATATCTTCGATGATTCACTGAATGCATCTTTGTCATGTTTTATCATAAAAGCCTTTTAGCCATTTTCTGGACATTCCTGTATTCACGATCTAGTATTTGACAACAAGTTTTCAGAGCGACAGTGATAAATACATTGTTTTCTGAGTCTGTGAATGTATTTTGTGTTGCAACAGTATTACTAAAAGGGTGTACTCAAAGGATCAGATGAACTTAAATGCAGATAAGAGTGTATCATTAAGGCACAAAAGTGATTTTGCATTGCTAGTGTAACATAATAAATGATAGAAAAAAAATCTTCCTGCCAGAG-TCTTTGTTATTCCCCATAAGAA--CATTCCTAAATTGTCTTTCAACCAGAACTAATGTATATAATAAAAAATGCAGTGGCAGTGAGGTTGGCAACTGTGTCATaatgaatatgtgctgcggaaaa-cgtgcataattgacagcattggaaactctaat--------tctagtagcagatacagctccagacactc--attccagaccctct-ccactgtcccCCTGGACAGTCTGGGTTTGACATATGAAAAGGCAATTAAATCTATTTAGCTTGTGCAGAGATGAGGATAAGGC-TGTGCCAAGTCTCCATAGGCAGA-CATCAGATTTATTTTGTTTCTGTTCtttttatttttatttttttaaGATTTTCTTTGCAATAGAATCTCTCAACTGAGATATTGGTTTTCCTAAAGGTGTCACTCAACCAGAGAGTGTTTTTTTCAGTCCTACAAG-AAAATTTAAAATGCTTCTGTTGATGTAATAAGTAACAACACAGGGCAAACCTTCTCACCCATTTACATCGGCATTATGGTCTCAGCCTGAAAATTCACGATCACTCCATTCCTCCCCAGAGGTTCT--TGGCAGGTCATCTGGCATATAATCCAGAGGGCTGCTTGGAGTTCAACTTAGATCTCTATTTTGCCAGAAGATgggaatcaag-cagggggcaagatgctaaatgggagagttattcagtacactgactagcatgggcttctggaagttattacaaaaggcgcattgaaaccagtggctcactgcacagcagtaggcaaggagggcaaggaggataatagTTGGTGTTAGGAGCAGGAGAAAAGGAGTGGCTTG---ATCATTTCTCTACAGTTTGGCTTTTCATCTGTTCCATAGAAATCTAAGAGA---------TCTGTATTACAGAAAAAAATATTATCACCA-GCAGACAGACAATGTGTTATATATCGCCTAAATAACTATTGCTGGCTAGGTTCTGTAGGGAAGGTGGCAAGCTTTTCTGATGGAAGGAGGTTAATCAGAA----------------------------AAGGACAATAATAATAGCAATAGCTGGGT--------------------------------------------------------------GTCAGTGATCATGCTCCAGAGATAAGC---------------------------AGGACCACAGGATAGTGAAACATAGACACACACACATATATATATGAATAGTA-----TGATAACTCAAGAAAGAT--------AAACattgtgcctttttttca-------aagaagagaaac--------------tcagattggagattttaaggaactttcaaggtcacaGTGCCTGCAATGAGATAATCTGAATTTTAGAACACTG-TGGACAGCGAAGTGCAGGTCCTTCAACTCCATGGACTGGTGCCTTACTCATT---TCCATTGGTAGAGTACTGAAAAGAGTTCAAGTAAAAAT-----GACTGGAACCTTATACAGCCCTTGAATTTAGGGCA---TAAATACAAATTTAGGGTATATAAATGTGTATatgcctcttgatctactctgggattatatcacaataaccctactgtagtct-gaaaatg-tgtaggtataaaatgcattgaatagtcctagcctgtaaaaactcatcagtaggtgacacagtacattg---taaaatggttgtttgcccttgtgctggatgggctgagtgggggtcctgccttgtgcatcttgccaaagcttgttactctaaaagcaaattgcactacatgtcactaga-----acagtaccaatacttccaaatatggagaatggatcctttggaactcatgattct-ttgcggca-tagtaaggttaaaaaCGTTGTTACTATAACCAGAATAGGAGAGAGATATCTGTACAGTTCATAAAACTGAGGCATGTTATCATTGAT
s HiC_scaffold_1 142555067 3362 + 233722169 tcattttgctcttttataaaaatgtagtaTATACAATGCCCAAtaatagaattattgtaaatattAGATGATACAGCtaccatttaaaaactttttttgagCCCTGAGaaactaaatgttaaaaaaaga-gacagaaacaactTGCACACAAATTTCTAGTT--TCCAAAAGGCCCACATCAATT---TGATAAAGACGAGAAATTTTAACTCATATTAGCTCAGCTCCAGCCAGATGCCAAGAAATTGGCTGATGAACTTCAGTTATTGAAGGAGGCTTTAAGAAAATGGTCACTGTGTCTACTGTTGTAGACATAATCTTTGATGTAGCACCCAGAATCTTCTG---TCATCT--CTAGGGAACACTGAACCCTGAAGCT----CCCAGCCTGCCTAGAACACAGTCCTAGCTCAAGAGTGGTTTCACCAAGTCCCCACATCTTTGAT-ATATCAGGTGACTAATGCACTTAGGGTGTAAAGATTCATACCTCTTAATCCAGCACTATGCAGC-CAAAACATTATCCTCTGCTCTGAACCTTTCACGAGGTACGCCGAAGTTCTGTTGCGGGAGCATCGCACCTTAT--TTCCTCTCTATtcattcctctttctttccctccctttccaCCGATTGTAGTGCCAAAATCACTCACTCATACATATCCCATGTTCTTGTATCTGGAATGAAATCTGCT-CTCTCTAACAATCATGACTCAACGGAGGAAAGAGAGCA----TCCCACGGCCTATAAAATTGTCTCACATAACGTTGAAAAC--CAAGACAGCTTTTTCTTTCCAATGATAGCTCCGTGGGGTTCCAAGTCAGTACTACTGTAAAGTAATTGGCAGATTATGAGTGTATCATTTGATTTTCCACTTAGGAAATTGCAGTTCTCTGAATTTAAACACTCTTTGTAATTTCCAACATATGTTCTCTTCTGTGCCCTCTTAGTCATCAGTCTTAGGATGAGTAGCTTTCTTCACCTCAAATTGTGTCACAGTTTATCCC---------TTGAGTTTCTCAGGATGAGGGCACAGTCCATAGAGACAGGC-----------CAGGAAGTTAAACTGTCTCAACAGTGCCTGTTCTATCAGTGGACATCATTT---------TTTTCTCCCACCATTTTTGTTAACAGTTTCTATGTGGCTCTCTCTGTGTTC-ATCCCCATAACCAGTCAGTCACAGTAGCTTGCTTGAT---CTTGGCATATGTGTATCAT-CTTTATTATAAAATCTTTTCTGTCATTTGCTG--------------CACCACCTGATACTT---AACACATCTTCA-ATCAAGGACCATAAATACAT-ACTTGATATATCATTGAACCAGTTGTGTGGCGATAGGACATTACTTAAAGAAGAGATTCAAAGGCTCAGCCTAGGTTAAACGCAGATAACAGTGTATCATAAAGGGCACAAAGCCATTTTGCTCTGCTGCTATAATAtaataaatgatagaaaaa---tcaTCCAGCCAGAGGTTCTCTTTATACCCCATAAAAAAGCATTCCTAAATTGTCCTTCAACCAGAACTaatgtatataataaaaaattcagtgGCAGTGAAGTTGGCAACTGTGTCTTAATGAATATGTGCTGGGGAAAAATATGCTTAATTGACAGCCTTGGAAACACAAGCACCATTGCTCCAGGAGCAGATATAGCGTAAAATGTTCCTGTACCAGCTTCCCTTCCTGTGTCCCTCTGGACAGGCTGATTTTGACATATGAAAAGGCAATTAAACCTGCTTAGCTAGTGCAAGGCTGAGAACAAGGCATGTGCTGAGCCTCCATAAAGATAGCgttaggtttgttttgttt-tgtttttgaaagcttttcttttttctctcttccttggcAATGAAATCTCTGAACTGAGATATTGGTTTTCCTAAAGGTGTCATTCAACCAGAGAGTG--TTTTTCGGTCctgcaagaaaaatttaaagtattctTGTTGATGGCCTAAGCACAAATACA-GGCAAGTCATCTCACCCATTTAAATTGGCATAATAGTCTTAGCTTCAAAAATCACAGCTACTCCAATTCTCCCCAAAGATTCCTGTGACAAGTCATCTGATTTACAATCCAGATGGTTGC-TAGAGTTCAAGATGAATCTTCATTTCGCTGGGAGATGGAAATCAAGCCAACAGAGTAGGTGCTAAATGGAAGAATTATTCAGTACACTGACCAGTG---------AGAAGTTATTATGAAGGAAACATTGAAAAGATCAGCTCACTGCACAGCAGTAAGCAAGGAAGGTAAAGAAGATAATAGAGGAGGTAAgcagtaagaaaa------taatttagataGCATTTCTTTAGGCTTCAGCTTTCTGTCCTTTCCACAGTAATCTTAGAGATGTTTGGTTTCtgtatcacagaaaaaaataatactgagacGGAAACAGTCAGTTTTATGTACACCACCAAAATAGCTA--ACCTATGATATTCTGAGTGAAATG------ATTTTTCCAACACATAGGggttattaataataaatattatcatatataattaataattaatactaataattattattataactgggtttttttgtgtttttcatttttattggtaccggggatggaactcacgaccgcctgcttgcaaggcaggtgcttgtgccactgagctaaacccccagccccttattatTATAACTGTTAAAATCATTTGTCCATGAATCAGAAA-ACATGCCATTAAATAGAGTGATAAAATCCATTGATAAGTTTAACAAGACGTCTAAAAAAACCCGATATCTTTTTCCcatttgaataagaaaaaaaacaaaaaaacaaaaaaacaggtcCAAGAGAGTAAATAGCTCTCAAAGTAACAGCTAGTAAACTCAG--AAGCAGAATCAAAAACCGTTGTTGGACTTCAGAGTTCATGCTCTTACACACTCCAG--TGATGGTTGACTCATTAAATTTATcagaacattttttatattatcttcaGTAAAAGTAACAAAACTCGGACATCATATACACATTGTAGGTgaggaaaactaaataaatat---gggtaCACAGATGT--------TTCTTGACTTGCAATGAACTTACAGC-CAATAAACCCATTTTACAATGGAAAATATTGTAAGCA-AAAATGCACTTAAGAGTCTTAACTTGCTGAACGGCCCAATTTGACAACATAGTGCTGTACGCTGCAGTAGGTGTTTATGTTCATGCTATCATGGCTGACTTGGGTCTATGGCTCA------TTGCCACAGCTCATCATCAAGAAATAGTATCCTACTGCACATCACTAGActgagaaaagatcaaaa--ttcaaacatGGAGTATAGATCCTATAGAACACTTACTGCTCTTGCAGTAGCAGTAAGGC--AAAACATTGCAAGCTGACAGATTACAGATCAAGGACTTCTGTGTATCTGACAAGGCTGTGACACATAATCCATAAT

a score=25195
s chr3           155529725 1455 + 160039680 TGTTTCAAACCTAAGAGCTCTGAATTTCAA--CACAAATTCACATAAGATAGTTTTATTTATAC------TACATTAGG---CTCTGTTCCACTTCGCTCAAACTGTGACATTATATTTTCAAACCCATTGCTTTGCCATC-GATTTTACTCTGGTCTCCTGGAGTTGTTACTGAGCTG--ATGTTTCCTATATGAGATGCGCAGCCAAATAGCTATTTTAAGAGAAAACTCATC-----TGTATGGAAAGATGAGCACTTCATTTTGTATTTTATTTGGTGCTTCATAGAGGTTGCAATAGTTTATATAATGCAATGTGTTATTTCGAAGGTCAGAGAAAAATATTTACTATTTTAT-GTTTTAATTTTTTACTTCTTTCAATTCAACTGTTTTATCAAGAAACAGCTGCATAT---------ACAA--ACATTTCAGTAGCTTATTCTTGCTTTAAGAAAGGTAATGAATTATTTAGTTTTGATACTCAGGTAATATTAATATAAATCATTGCTATGTTGCAAACATGG-AAATGTTAGAGATTGATTTATGTCTAATTTAATTAAGTCCCTCTTAATTTCTTCAGCATGAACTTGTGAAATTCCAAGCAA------TATTTTAAGCACTCAAAGTTA---------------------GCTTCTAAATAAATTTCCAACTGAGAAATTCACATTTTACCATTTCTAGTAAGTTCAGTATTTTTGCCAAATGTTGGATAAATTATATTTGGTTAGATCAAGTAG------ATTGTATAAAATATTTTAAAACCTTAATAATTATTACACAAAGTAGAATAGCAGTAACAATGACAatatacatgtatatatgtat-----atatataGTGCACGATTTATTAAATATTTTCCTTCTATAAATATTTTTTCTGTTTTGCCTAACAAAG------AAACTTTGACATTT-TAGCCAATGTTCAATAATCGTTATGAGTACATTTTAAATATCAAAG------TAGATATTCAATATTT---------ATTTATTAATGCTG---GTACTATTTTAAGGTGTGCAAAAA-----------TTTTCAGTTTATTTTTTATAGAATAAGTATATT---------------------------TCCCTGAATATATTTTATTTCAT----------------------ACAGTATAATTTGTGTATTTTAATGGTTCTAAACAAATTTTTATAATGCTTAGACTGTAGTA-----GACATTTAATACATAGCTAT---TAAATT-AAAATGCCCAGGAAGTCATTATCATAGGCATCTATTGGAAAGTGGATAGGATGAATTCTTAGGATGCATGAAGAAGCCACTATATCCATGACACACACATTCACCTGTGAAGACTGTCACTGTTCACT------AGCACCTCAGAGCC----ACTTTGTTCAATTGCAGTTCCCAAATGACCACTAGATGGTGGAAGTCTTAGTTA------TTCT-----AGGTCTTATTGGGCTCAGAGAAT------TTCCATTTCTTCTCATTTCTTCtccat---------------------------------ctatccatccatccatccatccatccatccatccatccatcattccatccatccatccacccacctacctacctacccatccagccaa
s HiC_scaffold_1 142600980 1623 + 233722169 TGCTTCAAAgccaataa-tctgaatttcaagaaacaaattcacataaaatagttttaattataCATTAGCTAGGTTGAGTTTCTCTGATCCACTTGGCTCACAGTATGACATTACATTTTCAGAACCACTGCTATGCCATCAGTTTTTCCTATCTTCTCCTAGAGG-GCTAGTAAGTTGCTATGTTTCAAATATGACAGATGTAAGAAAGTGGCTATTT--AAAGAAGAATTATTATAAATGTATTGAAAGGTGAACAGTTCGTTCCATATTTTATCTGCTACTTAATATATGTTACAGTAGTGTATATAGTATAATCAGTTATTTTCAAGGCCAG---AAAATATTCTCTATTTAATAGGTTTTATGATTCACTTCCTTCAGTTTTACTACTTTTACAAGAATCGGCTACATATCTTAGAAACACAAATACATTTCCATAA---ATACTCACTTTAATAAAAGGAATGCAATACTCA-CTTTGAAACTCAGGTAACATTAACGCAAATCACTATTGAGTTGGTattatggaaaataataaaatttaatttatattgatttta--taag--cctctcacttttt-----aaaaacttgtcaaCCTCCAAGTCATAAGTGTAGTTGAAGGAAtcaaatatacattaaaatattgctGGATGCATCTCCCAAAATATCACCAACCT-GAAATTAA---TTAACTCTTCTTGGTAagtcttct-ttttttcaaaatactgactgaattatttttgtttatatcaaGTAGAACATCAATGTAatgaat-tttctcaatttttctaattacagaaaaattaagactattatcagtaacaacaacaaaaacaaaaatatgtttccttaatatataat------tttataagacatttt-cttctgtattaaatatttcaagat------aCAAAGTCAAGTAAGATGTGGCATTTGTAGTCACTATTTAATTTTCCAAGTagataaatttt-aatatgaaatagtctctaaattttaaacatctggatttttgatatatttatattatatgtaatatatatatatatacacacatgataATGCTCTCTTCAACTTGCTTTGCACTG-GTAAGTATATTGTATCGCTTATATGGAATCATCACAGGTATCTTAATCCcttttttcccatcttttgtTCTCTATGAAGAGAGAAATGACAATCTTGATATGTTAAAGAcaataaacaa----tgaaaaggaaGAGCCTGGAATATTTTCAGCGCTCAGTGAATGATCGTagataaattgaaaataataaagaaa-------aagagacacatttTAGTAAGT-GATGATATAAACTCTTTGAAAACATG--GCAGCAACTTTTATCCTACCACATATTTGCTCTCGGTGGTCCTATCAAAATTTCCTTCTCAAAGGTCATCAGTGTTGCTGACTTTGAACTGCTTTATATATTTAGTTACCACTAGAGGGTGTGCTTTTATGTTACGTAACTTCTAACTCAGGTTTTTGCCAGGACAGTGGTTTAatcattcttttcccttttatctgTTCTTCATTCACTTGTTAACTTACTCTTTGGTTTAGTCAGattatccatccatctattcacccatccatccatccatccatccatccatccgtccag-cATTCATCTATCCATTCACTCTTACTACCAA

a score=27962
s chr3           155531390 1179 + 160039680 cccatctatccattcaccacctacctattatccacctatctatctatccatccatccaccacccatctacccatccatccacccacccatccatctatccatttacacacctgcccttccatctatccattcatccaacatctactcatctatccctccacccatGCTAACG-TTCTCCTAACAATGTTTAGTTCAATGACAATGTAAAACCCCACAGAAGCAAAGCTGCATCCTCCAAA-CTGAAGCCTAGGTTATCC-----ATTCTGAAAGCCACAGATGCTTGGAAATGCTATACTTTTTTTTTTCTTCAGAAAACAATTATAGGGCACATGAACAGTTCATTTT-CATCCTAGACTCAAATGTCCAGGCAAAGAGAATAAAGCTCTCTTCTCATTAGTTTTTGTTA--------------------TAATAGAACAGAAGGTATGAC------TTCTTACCAGAAA----------------------TGATGTCTCCTC--TCCCAACCTTCCTCACACTCATAGCT--CTAACTTACAGCATCAATTTCCATTAGTGAGATGCAAAGCCATATATACTACATTTTTTTCAGAAGATCTGTTTTGTCTGTTTCG-------TGTGTGCCATGGTCCTGTTATGGAATTGCACTTTAAATTTCCCCTGAGGCTAAACTGTCCAAGAACCATAATGGGTTTT-ATTTTTAGCAAATTAAAACT---ATAAAGTAATTGTTCTCTTCT---TTTGGGAAAGCAGAGCAAGTGTCTCTGTACTCTTTTGTTTGACATGCTATTTGGTTAAAACAG------GGGCA----TTTTCTTCTCCCT----CCACCCGAGTGTCTCTCTGGTGAAGAAGAGTTC-CAAGCAGAATCAGATGCTGTAGAGGAGAGAAGCTGCTGAATGCCTGAGGCATGTCTGAGCAAGCTTCACTGCCCTATTTATAAGACAACAGGGTGCTCTGCTTGGAAAGCCAGGCTTCTTCAGGGAGCCCACAGGCAAATCTGTTACCAAGCGACAACTGATTTCTTATGAAGCCCAAATTTAAAAGCCCACATCATTAATTAAACAGATGAAG------CCTTCCCACTGATAGTAACCTAAAAGCAGGGAGGCTCTTTGT-CAGTTTGGAGCGAGCATCGCCATTTTGTTTTCAGACAGCTATTGTTGTTTGCAGTCAAGAGAAGTGTGCTGTGGTAAG--AGAGAGGGGGCATCC----TTAAGAGATCATTTATTGGCTA-GGCTGGTGAGTAAT
s HiC_scaffold_1 142602463 1177 + 233722169 cccttttatctgTTCTTCATTCACTTGTTA---ACTTACTCTTTGGTTTAGTCA----------Gattatccatccatctattcacccatccatccatccat----------------ccatccatccatccgtccagcAT----TCATCTATCCATTCACTCTTACTACCAATTTGAACTACTGTGTGCTAAACAATGggaatttaaaaaccaaacaaagtgaaaataaaaacaataaatccaGAACTTTAATTGCTCTCGCACTTCAGGAAATCAGAGTTTACTTGAGGTA----ATTTCAACTGTAAGTCAGGAAACACTTCGCCAGCGTATACCTATGCTATCCTGTGTCTTAAACATAAGggtggaagaagaaaaaata---------ccttgccagtttgaaaaaaaaaaaaaaaaaaaaaaaagcaattgcaCAGAAGAAGTACCAGGTAATTTTTACAAGGGACAAAAGGTAGCCTGGAGAATAGTAATGTGGACTGGGTGTAAACATTCCTCATGCTCAGGGCTACCTAACCTGTCTCATCAATTTTTGT-------------AGCCA---------CGATTTTTCCA------------TGTCTGTTTTAGTCCCACTGTTTGCCATTGTCCCGCT--------GAGTGTTAGTTTTGTCCTGAAGGTAAACTGTCTAGGAATcatcattgatttttattttcagctAATTAATACTTCCCTGAAGTAG--GTTCTCCTCCCAGTTtgggaaataaaagcaaatatttctctgCTCTCTTGTTT--CATATTACTAAGTTGAAATGGAAATCAGAGcaatttttctcctcttcctttgtcCATTTGAGTGTCTCT--GGTGAAGAAAACTACACAGCCAGAATCAGATAGTGTACTGAAAAACAGCCTCTGAATGCCTAGGGCAAGTCTGAGCAAGCTTTACTGCCCTATTTATAAGACAACAGGGTGCTTTGCTTAGAAAGCTCAGCTTCTTCTGGGAGCCCAAAGGCAAATCTGTTACTAAGCAACAACTGATTTCTTATGAAAACCAAATTTAAAAGCCTACATcattaattaaacagataaagaTGCATTCTTCCCACAGTTCCTAACCTACAAGCAATGAAGTTATGCCTCCGGTATGTGGCA---ATCACCATTTCGTTTTCACAGAGCTGTT----CTTACAGT----GGTGGATCACTGCTGTGAGGCAGAGAAGGAGTGGCCTGTATTTAAAGTTTGCTTACTGGTTAGGGCAGGTGAGTAAT

a score=15060
s chr3           155539068 1312 + 160039680 AAGTGCACAGTCAAGATGACCACAAGATAAGCAAACATTATCTCA-ACTTCAGAATGGACTTTTTAAAATGCAAACTATGATTAATTTTGACACAAACCATGCTATGTCTCAAATTATGTGTCCTGGTGGGTTAGACTACACTGAGAAGATGTTCTGA-CCTTCTTGACGGGAATAAATGAG-------CTTTGCTGCCCAGGCAGACAGCAGATGTCCCCTAGCAGAGACCACTATGGTTTTAGAAAAGCATAAAATTAGAATTTCAAAAAAAGTAATGAAGTTGAAAAAAGTAATTTTCTTAATGAAGTATAAATTAAAATATTCAAAAGTGTTTCACAGGGCCATGGGTCAAATGATTTCAGTGCCTATATTCTTGGCCTTTTACTCACTTCTTTGTATGATGTGGGACTGGGCCACAATAATTATAAACAGTCCAAACTT---AGAGTCCACACTTCTTTATGCCTCAGAGCTTTTAGTAAAGATTCTTACACGAGGGGAAAGATACCGCTGCTTCCTAATACAATGGGATTTCCTGTCCTCTTTTCATATAAACTCTTTTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGAGGGTAGAAC---TATTTATTTGCCAAGACTAAGTTCCTAAAAATGACAATTTTCCCCACTTTCCTGACAAACAGAGATATACAGAATCACCTGGAACAAGCCTATTCTCTAAGACTCT-CAATCTTCAATGTGCTCCAGC-----------------TAAACATCTACTCCCCTCCTTGAACTAAATGCACAGATCCACATCTGGATTATGAT-TTCTTCAGCAAAATGAATGTACATAGTTTGATCATTTACAAATGTTTAAAGGCTATATTTATCCTATTGATTTCCATTATATTTAATGCAATATCATCTCAGATAACCTTTATGTAGTAATATATCAATACAGTCAAAAATAAATAACATACCATAACGCATTTTCACAA------CTATTCCAGAGACC-------------------ATTTTCTGATAGTTTACTCACTAACAATTGCTCAAAATTTTACATATTCATTCCACATATTGATTGACCTGAAAGTTT------GAAATTT-----------ATTTAATATATAGCCTATACCAGTTCTATGAAAGTATTATTATTAGTAGCATTTTATTTTTTAAATTAAGAGCTTTACAAATTAAGAAAATATGACACCAATGTTTTGTTCAAGAGAAGTCAATTGATT-------CAGGATA-TATTCAAATCTGAGCAGTGTGGTCATGCCTACACTGTGTTCTTACTCAAAGTTATACACTCTGTTAAAAGG-AAATATACATGCTTGA---AAAGACACTCATGGAGTTTAATAT
s HiC_scaffold_1 142609042 1276 + 233722169 AAGTACAGCATCAAAATTATTACAGAATAAGTAGATATGTTCTCCTACCTCAGGAAGGAATGTTATAAACACAAATTGTAATTAATTTTGACACAAAGCATGTCATGGCTCTAATTATGTGTCCTGGAGGGTTCT-CTATGTTGAGAAAATTCTCTGACCCTTGGTGACAGGTATAAATGAGAGCACTTCCTCACTGAGTCGGGAGACATGAAAGCATTTGTGACAG---CCCGTTTTCTCGCATAAAAGCACAAAATTA---------------TATAGatgttaaaaa-------------cataatacacatcctaaa------aataatgttttataagtTTTTAGGTAACATTACTTATATTCTCAAGTAGTTGACTTTCTACCCACTTCTTTTCACATTGCGTGACTGTGCTAAAATAAACATGAGT--TCCCGACCTGAGAAATTCCATAAGATTTATTGCCTCTGAACTTTAATTAAAGCTTCTTCTCTTGGGGGAAAA--------GATTCTGAATA---------------TCATTATTTAACAGA------TTAAAAGTCTTTATATTGGAAGATaggaattttgttctttttctaaatttttgaggGGAAAACAAGTGTTCGTTTGATAAAATATGGTTTCTGACGAGAATGATTTATCTTAAATCACTGACCA----TGATAAGcataagtgttt----------ttttttcaaagtccTTACAAGTTTAAAGTTGCTCCAACTATATTTGCGTTTCTTTTAAGTATCTACTTCTGTCATTTGATAGAATA-------TTAGCTTAGGCATGTAATGTTGATCATTAAAACacat-taaataat---attatttatatat-tttaaa--ttatattcattgta-----ttttaatgtattcCAAACATCATAATC-AAAATGACATTTTagcatgaatatatatgtataaccaAAAACATAGAACATGAAACAAtgcatttttataataatatttactaCAAGTATCACATGTATTCTCAAATTGAATTTTCTCATGATGTTATTGCTGCAACTTACTTAAAATTTTCCATatc--tcacacacacgcacacatctGAAAGCTTCAAAtggaaatttcaaatatatgaacTCAATAAGTCATCT-TAGCAACTCTGTAAATATGATATTATGTGTAGTATTATAATTATACAAATAAA----CTAC--ACTAGATAAACCTTA----AATAACTTATTTAAAGTC--TCAATTAAATAAGTGACCTGGATATTATTCAAACTAATACAGTCTGGTTG----CAAACCCTCCTGCCATTTAAGGAGATAAA--CTATTATAAGGCaaatacacattttgaaaataaaggtaCTGCTGAATTTTAATAT

a score=41065
s chr3           155547199 1781 + 160039680 GTTTCTACTACCAGGCCTCCAGAAAATAAGTAAGAATTTAAGAGTAAGAGGACAATTATTATCTGTGATAATATTGCTGCAAACAGCTCTCAGTG-------------GTGGGTGATGAAG-TGTGAACCATAGTAGTCAAAAAAGTATTCTCTGTGGGGAAATTAGCTGCTAAATAATATAAGTCGTGTGAATAATTTGGGGCAAGATGGATCAA-ATGGGAGATGCTGTAAGCACAAAGAGACTAAGAGGAAA-TGAAGCTTGTGCCCTC---AAAGAGGAAACGTGCCCATGACTCAGTAACAATGAAGCAGGAAGGCATGGGGGCAGGCTCGCTTATTCTACATTGTGAGGAGAA-----TCATCGCGTTGCCCATTGTCATTCAAAAATGAGTTTCTTTC----------------------ATTCAG--------------------------------------------------------------------------------------TAACATGTCTGTCAGTTTTCTTAGGAAGATAAGGGAAAATATTAGAGAGTACGTTCTGGAGAGAAACAAAGAATGAACAAGA----AACATTTCTCTTGAAGGGTTATTAATGAACCTGGAAGAAAAGTAAGGGGAAGAGAAGAGGAGGAGAAATGAAACCTGGCAAAT------GTCCTCAGTCCTGGAACTCTCCTTGGTGAAAATCAGTATTAGGTCCTTTCAAAACAAGACTAATGCTTCATTTTTGATGTTCTGTG--GATGTATAGC-CCTGTACACACATTTCCATCAAAACCCTCTTACCCACAACTGACTGTTTCTGAGCACTGTTGTAGTGGA-TCCATGGATGCATAAAGAGGAAGCCACTGTGGGGTATAAAACAAACAACAAGAATACAACCTACACTAGAAGTGGAAGAGAGTTCAAATGTGAAATGA-------GATTTATAGAAAGC-TCGGATCCAGATACTCTTACCAATA-------------------------------------------------------------------------GGACTGGG------------------TCCCCACACAGCCAACTCAGTTGATTGCTATGTTGAAACATTTGACATAGGGCAATGTTAGAAGAAAAACATCCCAAATCAATTTGAAGGTCCAAAAGCTGAAACTAAAATAATCGTCTTATAGTGATAGCAGTGCCTTATGAAAATAAATGAGACTCGGAATCAGTAAGAACTCATTCTGTTTGCATATCTTCATTTCATTCAATTGATGGCCACAGATAAACT-------------ACAGAAAGCCAAACAGCTCAAGTGTTTC-CACCCTGGATAAACAACAGAA-CGCAGAGTCCAGGCTTGGTGGGTATTTC-CATGAATATGAACATATTGCTTCCTCATTTTAAAATCAATTTGCTTGTTCTTAGGTGGTGGAGCAGATAAG--CAAAGCTGTCAGTGCCACACTTACTCTGAAGGTGACATCTGCTCAAGCAGGTTTCATCTTTCTATTGTCTCGGCCGCCTTCATCACCCATCTCCGCAGCTGTCTAAAAGCGCCCTTCA--CTCATGCTTTCCTTGGGGCAGAGAAATGGAACTGCCTGTGCATTTTGACCACTTACGAAACT----ACTGTGTA-TCTGAGGGTCTGAGCCTCTC---TGGGGGATGCAGCTGTTTCT-TAGGACTGGTTCTTTTATGCTTCAGAGAAGGAAAGAAA-ATAGCTCTATTTACTGCTTAGAAAAAAAAATATGTATCTGTTTTGAATTTGCAGCAATTAGATTTCTCAAAATGGAAGCGTTGAACTTGGATGGTTCTCCGGTTAAGAAATAATAAGGCACATGCTTGATTACT-GAAAAGCCTCTTCTTGTCCATGTGTCAGAATTTTAAATTTTATTCAGTAAGCATCACCACTATTTTCTTCAAAATCTGCCCCCTTACGTATTCCTGAATCTGAGAGCAGCTCGGGCTCTGGGGAGGTTACCGTGCTCCTTGCAAAC
s HiC_scaffold_1 142619636 1974 + 233722169 GTTTCTGTTACTTCACCTCCAGGAAATAAATTACAAT---Aaagcatacaaataaataat-tttatga--gtAGTGCTACAAACAGCATTAAATGAtaaaaagtatgtgtgtgtgatgAGGATATGACTTAGAGAGGTCACAGAA--------------------------TAAAT--TGCAAGATTTTGCAATCATTTCAAACTAGATGGTTAATTACAGAAGACATGGTATTTCCATcactactaagaaaaaaatcaggttgATGTGATTTAGGAAGAGGAAAAGTAGCCAATGCATAGCAAGTGTGAGTTAGAATGTCAAGGGATGAGGTTAGTCTATTGTgtgctttgagaaaaaaaaaattattgcattaATAGCTGTCac-caaaactatttttttttttgtgtgtggtattggggatcaaactcaggacctcacctttggtaggcaggcacttaagccacagagctaaatccccagcccaccaaaactattcttaaagaaaaaaatttcctgtaATTTATCCATTAGTCTTCTTGGAAAAATAAGGTAAGA-ACTAAAAAGTGTGTtttggagaaagacaaaaaa---gcaagagCTGAACATTTCTGCCTAGGGGATAAATATAGATTTGGGAGAAAAAT--GCAGAATGGCAGCgaataggaaataaaaacaaggaagtTTGGAAATCCATAGCCC--AAACC------AATGGAAATAAATCTGGAATCTCTTCAAA----GATTA-TATTCAACTTTTAGTTCTTTTTGCTGCCTCATAATGATTGCACCTTAGTTTCTGTTAAAATTCTATCACATACAGCTGCCTGTGT-TGAACACAATTTTGATGGGGTATGTGCATGGAGATAAGAAAAACAGCTGTAGGACATAAAACAGAGACTGAACATTTCACAGTGGCCAGAA-TGGAAGTGAGGTAAAATA--GAATGACAGTGGGAATTTATAGAAAACATTAGTCCTGGAAAGTCTTACCAATACCCTAGGAAACAGAGTACAAACTCTGATGCACAACTTCATTTCCCACTCTACCATTTGTCCTAAGAAGTGTAGGAATTAGAGTGTGTAAAAAAAGAACTTCCCTTCACATTCACCGAGGACGGTTGCCATGTTGGCTTAGTTGATAAGGGgcgatttaaaaagaaaaatgttgcaGGTCAATTTGAAGGTGAGAATAATGAACTTAAAGTAGTAATCTTGGAGAGACA----------CTGAAATTAAACAAGAACCAAAACTACTAAGCTCTCTCTTTGTTTATATATCTGCATT-----CAACCGACTGCTAAAGGTAAAATCGACTTTACAGtgataaagaataatactatcaCAGAGCATCACTCTctgagaaaacaacaaaaatacagagTCCAGACTTGGCAggcatttttcacagaaatgaaCATATTGTTTCCTCATTTGAAAATCAATTTGCTTGTTCTTAGGTGGTGGAGCAGataaaaacaaagctgtcaacGCTACACGTATTTTGAAGGTGACATCTGCAAACGCAGGTTTCAATCTTCCATTGTCAGAGCCCTTTTAAACATTCATATTCGCAGCTGTCTGAAAGGACCCTTCAACCACATCCTTTCCTGGGGGCAGAGAGATGGAACTGGCTATTCATTTAGACCACTTAGAAAAACCCAGACCATGTATTCCGAGATACAGAGCCTATCTTTTTGGAGTTGCAGCTGTTTTTCTAGCACGGGTCTTTTTATTCTTCacagaaggagaaagacagaagTCTATTTATtgcttag--aaaaaaatatgtatct-tcTTGAATTTGTTGCAATTAGATTTCTAAAATTGCACACATTGAAC-TGTACCACTCTGGGGTTAAGAAATAATAAGGCATGTGCTTGATTATTAGAAAGGCTTGTTCTCGTCCAtatctcataatttttaaatttattcaagaGTCATCACTGTTATTTTCATCAAATCTGTCCTCCTTTAGTATTCTTGACACTTGAAGATCCTTG-----TAAGAACG-TGCAGTGCTCCCTGTAAGC

a score=32741
s chr3           155550625 1921 + 160039680 TTAGTGTTACAGTTCCTCAAGGGGCTTAGCACAGTCT-CTGTTCAGC-TTTAATCAAATAGC---CATTTCTAGAACAGCAGAAAAAACATCGG---ATACTTG--GACAAAGCTTTGAAATTAATTTGCATTATT-CTTTTAAATGA------GGCAAT-AGATAAGTAATAGGCTAGGTGCCTTCATGAAGAGGTCCTGTCAAGTGTTAATAACAT-GTATCTGCATCTAAAGTGTATGC--AAAGCATCCCTTTCCATCCACAAAACTTTCTTACTAAACGCTCCACTCAACAGATAGCCACTCTTG----AGTTTGCCTGTAGCGAGATAAAAGG-ACAGCAAGGAGATTTTGACAATATGAGGATTAGGGAAAAGACATGATAAGAAGATTAGAAAGCCTATGTGTAAACAAATAACAAAGATCTTTTTCCTTTGGTGAATACTAACGGAAAACATGAA-AAATTCATTAGTAATATGTCAGTAGTAAAATGTGTCTTTAGAAACGGTGGCTCAGACACTATATTGCTGTCCCTGTGTCTCTGTTTTGTTAACATCACAGAAGATTCACTGCATGT-----------CTTGTACTGACATGCACTTTTAATTTAGGATATTTCTTCCTGACCtttgtttgtttgtttgtttgtttgtttgttACAATAGAACAATTGTAAGCCACTGTAAGTGGT-----GACATGGTAACATTGTAAATGCTGTGGTTACAGTCTATCTCATGGACTCCATTGCTATAATTTCTAAAATAGCACAGAGAAGGACTTGGT---GCTG-AAGGCAGAAGCATGCAGATTTTGTGAGTCTGA-----------------AAAAGTGGGGACGTAACATTGTGTTCATCATATTCTTTTATTTGTATTCTAGACAGCCTGGTGTATGACAGATGAGAAGGTAGACAGTAGAGGAAATAACAACCAAGAAG-------AGGGGTTC-----TTCATGGCTTTCCTAAGCC-AACATAGCCCATGGACGCTCCGCAGTTCTGGGAGACA-------GTGCAGTATATGGCTTCTAATAGTATCAGGACTATATTT-GTTATGAGAAATATGATTACCTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGCC-----ATGCCAGTGACAGAATGAA--CAATTACAAGATGGTCTATAAATGTACTGTCATAGTGAACTTTGGAAATCCATACATCTGTAG----------TTTTCTACCCATTTGCATTAAGGTATTAATGAGTTA--GTTTCCCACCCAGTTTGTAATAGAAATGGTATAAAATAATA-----TGATAAATTATCATTAAAATTCAATACAGTGTCCAAAATAAATTAAA-ACACGTTTAAATGCCCTAATTTGAGAATT-AAATATTGCCTCAGTCTAGTGCCCTGAGCAAgcaaaccatttaacctccacctcagcttcctcaaattgggagataacaattatttacccacctcagaagagtggaaggtctaattacttaatgtttatagagcactttaaagtggaaagGAGCTGAATAAGTATTACTATTAATAGTATAGGCTCCTTAATTTGATTTTAGTGTTTGGGAACAATGAAAGTCTAATTCAGCAGCTTCCACACAGCCTTTGTTGCTGTGACTATAAAATGAACTAGTGATGCATTA--AATTTTCTAAAGGAGACTCCTATAGAATGACTGATATAGAATTGTAATCATGCCAGTCAAGGACTATGCTCAGAATCTCAGAGACAGCAGAGATACTTTTTCAAAAA-------------------ACCTGAGGGGAA---------AAGAAGGGAAGGTGCCCAGTTCTGTGTGAAATGACAGGCAACACTGTTTGT--GTCCTCTCCATTCTATGTGGAATTTTGTTCTTCattctattgagtagggattc-------tacttgccctatgatacatgggacactgaggttgggaaat-gttgcataacttgatgcagcctccatagctactcattaaca---gaacAACACATGGAGTGTTTG
s HiC_scaffold_1 142622964 1946 + 233722169 TTGGTATAATGTATCCTCACAAGACTTTGAAGAGTTTTCTCTTCAGCATTTAATTC--TAGCTCACATTTCTAGAATAGCAGAAAAAAAACTGTTACATTATTGcagttaaggttttaaaa---atttgtattttttcttttcaatgattgTAAGGCAACCAGATAAATC-----CTAGATAACTTCATGCAGAGGAACTCTAAATTATTAATCACCTAGTTTATGTGTCTGAAATTTATTCTAAAAGTATCT-TTTATATTCGCAAGTCTTTCTTAGTAAACTCTTGACCCAAGACATACTCACCCTCTCGGCAGTTTGCCTGAAGTgagataaaaatcagagcacagaGATTCTGACAATATAAAGATTCGAGAGAAAAAATGATAAGA---TTAAAAAGCCTAAGTGTAAACAAATAccagcagt---tttattttggtagaCA-----GTTAATCATGAACAAATTATTTGGTAATATAACAGTAGCAAAATTTGTTTCAGAAGAAGGTAACCTAGCATCT-------TTTACCTCTACATCTATTTC--TGAATTTACCAAATATTTACTGGATACTAACTTTGACACATGAACTGGGATACAACTTCAGTATGGCATAAACTTTTTCAGCCTT------------------------------AACAAAACAATCATAAAACA-TCCAGGTAGTCATTTTACAAGGTAA------AAGTGCTGTGGTTAAAGCCT--------GATTCAATGACGTTTACTTTCAAATTGGCA--GAGAAGAACTGAGAAGAGCTGGAAGGTAGAATCA-GAAAAACTTGTGACCTTGacccaaataaaatttaaaaaaaggagatacaTGA---TGCGTTGTTTTTATTATGTTAACTGTAAATGGGTCAGCAATATGTAGGATGGACAAGATGA-GGACAgagaacaaacaaagaaataggaGGTTACTGCAAGGATTTGTATTTTCATCACTTCCCACACCCTAAGGCAGTCTCTGACTATCATGTAGTTTGGGGAGATACTTACATGAATAAAACATGGTTCCTAACATTAAGGCACCAATATTCCGAGAAAGGAAACAT---------------------------------TCTGTAtatgggaaagaaaaggaagctttAAAATATGACTGACAAATTCTAGCTCATTACAC-ATTCTCTACGTGCGTGGTATCACAGGAACCTTACGGGACCAGCAgttctgtggattttttttctttcttacctaTTTTTATTATCTCATCAGTGAGTTACATTTTTCCATTTGCTTTATGATGGAACTAATCTTAGGTGATACTATATAATAAATTAGCATTAAA-TTCAACACAGTGTCCGCAGTAAATTAACCATAAATTAAAAAGCCCTAATTTGGGACTTTAACCATCGCCTCACCCTATT-CTCAGAGCAAAAAAACCACTTAACCTCAACCTTGGTTTCCTCGAAGTGGGAGCGAACAATTACCT-CTCTGCTCAGAAGAGTGTGAAGACTAATTAGTTAATCTTTGTACAGTGCCTTAAAGAGGGAAGGCACCGGATATG-ATTGCTAGTAATAATATGGACTT-TTAGTTTGACTTGAGTGTTTGGGAACTATGAGGGTCTTACCCAGAAGCTGTCACATGGTTGTAGCTTCTATGCCTTTTCAATGCATTTGTAATGCATTCCTGGTTTCTAGGAAAATAGTCTTATAAAGGAACTATTAGAGGGCTAAAATAATATAGCTGAACTGTGATTTTTAGGAGAGTAATGGAAGCATGGACCTAGTTCCAGGAAAGTCAAACCCAAAACACATACATGAAACAAAGTTAAATGGAAGATAGAGTGGCGGAAATCTTTGTATAAAATGACAG-------TGTTTCTTCAGCTTCCTCAGCCTTCTCGGATATTCTTACTGCTTTCTTTGGCTTATCTAATCAATTCCATTCTTTGCATTTTATAGATGGTACACTAAGactccaaaagagttaaagaactTGGTTTAGAATTCATAGCTATTGACTGATGGTTGAATGACATGAGCAGAGTCTG

a score=22467
s chr3           155560534  999 + 160039680 GAGTCAGGATCCAATTACTTTAAATAAATTCCATGA-------GTGAAACTTGACTGAAATTCTCAGTGGCCACAGTTCCCAAAGCAGTCAATAAAGAATCAAATTCTCAGT----TAAACATGGGGAAAGCCAGTAAAGGCAAGATGGCTGCTCCAGAGCCATGCTGTGAACTGAAGGAAGCTTAAGCAAAAATAAATCCAAAATGGAAACATTTTCAGATGAAAAGCACTGCCTCATTAGTCAAATCAGACATCTAAATtgggaagagataaatcttgtcacattttggacttgttaaatgtctggaaatattttcaaatgaaagatgtttctaaaattcaatgcaacaaaatgtcactcacttatatccttaattttaaaaTA------TCTGAGTGGCATAGATGTAAAACTTCTCCCCATACTTTCAGACTACTTTAGTGTCATCCTATTAAAGTT-TGCTTTGGGGGGATGGGGTGCTTTCAAGGAGAAAGCTCTAAAAGGTTTCAGACTTAATTAAATAAGCTCACCGAATTTAGCTGTTCTACTTTGAAAAGTTCATACCCTAGAAAACACAGGTCATAATGGAGTTGCTGGTTTCTTTAGCTACTCCCTTAAGAACATGCACTTGAATGTGCTGG----ACTCATGGTCCACCTGCTGTTCCATGATATAAAGAAA-----------------------AGTGAAGGCATT------------------AAGAGTAATGC--TGCTCT-ATAGTAGAAGGTAGACAACTTAGAAAATGGCATTGATCTTGCTACAGCATAGCAATTCT-TACTTTATTAAGTTACTTTG----------------AAGCAAATGTCTGAC-TAAGAATTCACTCCTGTTTCTGTCTGAAGGGAGATGCTTTATACATTGTAAGAAAACTGAACAGCTATCAATATTACCACTGGAGGTATTTTCAATTCTTTCCAGAAAAAAATGTCAGCATTATATTTGCTTGACCAATGAAGTTACATGATT-CTCTGATCTCCTGGAATATTGTACTTCATTTGTAAAATGGTCTAAACAGTTCCATTTTAA
s HiC_scaffold_1 142628240 1023 + 233722169 GAATCAAGAATCAgatgatttaaagaaaatacataaaattttagtaTCTTGTGACT---ACTCCCAGTGATCACGATTGCCTAAGTAATAATGAGAGGAGAAGATTTCAGGCATAataaaggagggaagagaaagtcATGTCAGGTTGG-GACTTTATGTCCTTGCTTTGAGCTGAAGGAAGAGCcagtgaaaataaattcaaa-ttgaaatattttcaaa-gaaaagtccTACCTCATTCATCACTTCAGACTTCTAAATTGAGAAAAGATAAATCTTCTCACATTTTAGCCtggtttaacatttgaaaatattttcaaatcaaggatttttctaaaatttagtgCAACAAAATGTCAGTCACTTTTagccttaatttaaaaaaaaaaaaatctgagtaaCCTTAATACAAAATTTATTCCTTTACTTTCAGATTACTTTGTAGGTTTCTGACTAAAGTTCTGTTTTGGGG--ACGA------TTCAGGGAGATGACTCTAAAAGGTTTTAAATTTAACTAGACAAACTCAGTGAATTTAGCTGCTCCACTTTGAAAAGTTCCTACTGAATTCGATATTTGTCGTAAtatatccatttatttttt------ccctcttatGACTATTTACTTGATGGTACCAGTAACACTCAT-ATAAAAGTCTTACTATGTGttacaattaaattttatttcttattttcttaactggtgagaatatttttattttattcatactCAACAGATATACAttgttataataataaaaatgaagaaaattaaaacataattttgacCTTGTTGGAATAAAAAAGTGCTATATTTTAATAATCTCTCCTGATAAAGGAAGCCCAGAAATCAAAAGTCAAACTTAGGAATACAT---------------GAGATAAATATTTTG-ACATtgcagaaaaataaggaaatagtaTATACTAATAATG------TTCTCAATTTCTTC----AACATATAT--------TACTTTTTAGTAGAATAAGGCAATGTGATTCCTCTGTT----TAgagtattgttttaaatttacaaGGT--TCAAAATAGCTCAATATTAA

a score=9992
s chr3           155566498 785 + 160039680 AGACAGTGGGAAGGGTGC--TTAAAGATCATTTCTTGGCA-ATAAAGATGTTTGATATAATGCATTTCCTTCATATCACCTTGATAAAATAAATAGTTGAGTTT-TGGGTAAACACAGAAGCCTCTAGGAAAAATTAAATCATGTTAAGGGGCTCTTTCTTCTATACC------TATGGTAGGGCTGAGAATACCTGTTTTATAGATATGATATATCTATGAGATCTAGATCACTAGTAACTAGATTCTAAGTAGGATACAAAAGACAGTACATTTTTTTTCCTGATATTAAGAGGTAGATTGCAAGGAAGCCCATAGGTAGAGAATATGCACATGAAAG---------------------------------------------------TTAGCACAGAATTAATTT--AACCCTGTAGAGTTACTGCCTTTATATGAGTT----------TCTTTTCTCTGTCTATC---TGGCAT---AATTGCTAGGCAAGGTGACTCATTATGATGCAAAGGTGAATATGCTATGGAGTGGGCCTTGGTTGTGAGTAACTGTCATTGCATTGCAGGTGAGGCCAGCAGAGTCAGAGGAGAGCACTGTAAGTAACAGTGAAAGCATGCTCACTTGATCTTGCATAATTTTCCTTCCTAGATGCTCAGGGATTATGCTAAGCTTCAGGAAAAGATCAACTGGGCAAGAAGCTGAATGAGACCCTTGGCAGCAGTATAGAGAGTGAATGTCCAGAGTAAATTAGGCA-GTACTTGTAAATTAGCCCAGAAGTCCCCAGACAGCTACAGTGAAGGCCAGAGTCAGAATGTTCAGGTAGACTCGCAAAGCAAGAATGATTTTAAGTGTGATTTG
s HiC_scaffold_1 142654703 779 + 233722169 AGACACTTGGAAAGTTGTAGTGGAAGGTTATGTTCTGGCATACCAACGTGTCTGTTATCATGTTTATTCCACCTCTTATATTAATTAGAGAAATTACTGGATTGGTGGTTAAGTACTCAGCACTTTGGGAA-----------TTCTATGGGACTCTTCATTCTGTACACTGGCATGAGATAGGACTGAAGATATCTGCAGTGTGGATGAAATTCA-----GAGATACGAATTAAGACTTGCTATATTGAGGGTGAGGACCTGAACTCAGA----------TCCTAGTATGAAGTGATACATGACAAGAAAGTTTCTAGGCAAGGGCTCCACACATAGGAACACATGTGCATTAACTTGTAGGGATTATACTAACTCAATTCACATATCATTTTGACACAGTACTTATTTctagctctttattttttaccCCTTTATACCGATTAGCATTCCAATTTTACCCCTTTATACTGATTAGCATTCCAATTTCT---CAAGTAGGCTCA----------------------CTATGGAGTGA-CTTTGACCAAAGGAACCTGGCATGGAACCACAG----------------------AAGGTAC-ATAAGTGACAGTGAAAACATGTTCACGTTGTCTGTCACAGTCTTCCCTGCTAAATGAACTGGGATTGTGTTCAAATTCAGTAAGGATT--ACCAGGCAAGAAACTAAATTTGACTCTTGGAAGTAGTACAGATTATGTGTGTCCAGAATGAAGTAtgcatttatttccaatttgtCTCAGAAAT-TCAAGATAATTATGATGAAAGCCACAG---GAAGGGACAGATAAACT-----ACAAAAAGTGATTTGAACTTTAAACTG

a score=30738
s chr3           155575679 1893 + 160039680 TTGATTTTCCTCTAATTTCTGTGATATTTGCCTTAATCTGGAATAAAATGATATTTTCATAAACTTTAATTCATAAATCAACAATGGAG----GTGGGGCCATTCAACCATTTTCCACAAAGGCAGCAACATAGGAAAGCTAAAACCTACACTCAGTTCT---------------ATCAACTCTAAACTTTGTA-ACTTCACAGGCTGTCTCTGAAAAAGGAGGTCTTTAAGAAAATC-TCACATTATTTCCAGAGATTGATAACTTTTGAAATATTGGCAGCCTCTGAAAGTCAATACCATGGGAAGTAGGTATAAATTTTGCTGTACTTATTAAAATCTAAAAAGT-------ATTTCTTTCACAAAGATGT--------------------------ACTTAAAAATGGCTTGCCATTTCAAAAT------------AAGAAATGAAA-GGCACAAGAGAGGGTTTTAC----CTGTAACTTGTAGAGTATATCTATTTCTTCTTTTGTTTATTGGGTTATTGGCTGTGACAGTTTTAATGTCCTTACTATATAGACATTTAATATAATATTTCAAACAATGCTTGTGAATATT-GAGGGTGTATCTACATA--------------------TTCTAGAACAGAAAAACAAGTTTGTTAAGATGTG-ATTAGATTTA----AAACATTGCAAAATGCTTATATTTTCAAATA---TATTTGACTAGTTTCATTCTTAAACCAAA--CAAAGGAAAGA------CTGTTTGGTAAATAAGAAT------------------------------------GGTATATggga-----------tgggagaaatggct-------cagtggctaaaagcattt---------gttgc-------------tcttac--------------agaggacctgagtccagtt-----------------------tcag----------gaatccacacaggggctcacaacta---ttaattccagtttcaaggtatctg----------atgtcctcttt--------------tggcctttgtaagcactggatatgaatg----------tggta-----cacaaatatatgggcag-------gcaaaacaaatgca-----cacaaaataacaaagtaa-------------------------aTAATCTTAAAACA-AATAATGCTCATTTGTTAACTATTATTTTCCATGATGTTTATATCTAGCTAGTCAAG-AGCAATGTCATACACAGAGA---TACCTTGAAGCAAAAATCAGCTTTTCTTTGCCACATGCCATGGTACACTGATAGAGTTGGC-------ATATCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCTTGTGGTGATTTGATTTTGTTTCGTGTGTTTTCAAAACAATTCATCTTT---------AGTTAATAAAATATTT-------GCACTCTAGAGGGTTTAATGGAA------ATTGCAAACGAAATAACAGG-CAAC-ATGAAGACTGCTTTGTACTATGTAAACAAATAGTGGGCCTATCTAGCCTGGTGCCTTGTTTGTGTTCATAACATTTGAAC-ATGAACTTTCCTTGTTATAGAGTGGTGTTCACAATCTTTTCAAAGTGCAAGAGAAAA---CTTTTTTATTTCTTTTGAGTTTCTTTTTCTAATGAGTTGGTAATGTGTGCAGCACCCACTGCTGATGTAAACCTGATAGAATTCTCAACTCATTTAGCTACTGTCTCAACAGGCAGACAATGCCTGGTGGGAGGGATGATTAAAAAGTAACAACAGAGGCAGAACAAGCATGAAAAA----AATCTATAATAGGAGCTGCACTGCTGTTGGGCTGTCCTGTCAGCGAAGAGAAGACAGCACTTTAATTATACAGTGTGTTGGTTGAATGATGGGCACACCAGAGAGGCAGTAAAATAAAGAATAGAGAAAAAAAACCGCCCTTTGATCATGTGCCCTGACCATCAAC-TAGCAGAGGCAGTCTTGAGGA--------------CATGTTTCCTGAGCTGTTAGATGGTATTCACAAG-AAAACAATGAGGTAATTATTTCCTGCATGTAGCTAGTCAAGCAGGGCAGGGAAGGCAGAAGGTCATCTTTCTGCTGCTCAATTATCTTATAATTTTCAAATTCCTTATGCTTCTGATTTTATAATCACAAAAAAGAGGTAAATCCAGTGTTG
s HiC_scaffold_1 142662233 2154 + 233722169 TTGCTGTTCATCAAGTTCTCATAACCTTCATCACTACCTCGAGTTAAATATTGCTATTGTGGGCTTAATATTACAAACAAATGACTGAGTATTGAGAGATTGTT------TTTTTCACAAAGT-------------------AGATCGAGACTTAATTCTCAGGCTTGTGAAATGAAGAAATCCAAACTTTATCCACTCTACCTTCTGTGTCTCAGAAATGAAGTCTGCAAAAAGAGCACCAAAATATTTTGAGAGATTGATAACTTTGTAAGT----GCAGACTCTGAAAGT-GCTACTACAGGGAATGTGAA-AAATATTGTGGTAGTTATTG----TTAAAAAGTTGACCttggttctttaaaaaacatattgatctttttcttttaatctttaaaagcTCGAGGGCAGCTTG--ATTTCCAAATTGATAAACCAAGAAGAGATGAGTTGGATCCAGAGA---TTTTACACCACTGTGA-----GGGGTGTAGCTATTTCTCCTCTTATTAATTGGGTTATTA----TTGCAAGTTTGATAACTCTActacagaag-----aaaataatcttaaaagaaATGATCGCTACTACTAGCGGATGAATCTaggtaaaaaaataatttatcaaattttccagaaaagagaactagggtttttaaaaaatatattaaaggaataacaaatatttttaaagatttatattttcacattaatTATTTGATAAgctttattttgaagacaaaagtaaagaaaaggtaTGTGCCATGtgctaaaaaagaatattttattacagACAATTACTTTCTGTAATCATCGAGGTCAAcggaaacattaaaatttaaataagatggCTACCGATACAGCAGTGAAGATGTTTTAGTCTTAGTGTTACGATATTGAATAGACCTTACCAAATGTTTCTGCTAGTGCTCATGAgtttacttattttgaaataatatgaCAAAGCTCAGTATAAtgtaaaagtataaacaaagataCTCTATTAAAGTTTGTGACTGTTTGGGGAATTCTGTACCAAACACAGGCCTTCTTAAAAATCCATCTTCATTGCAATTTTAAGCATGAGACttgaatgattatttttattgtaaaggcCCTAAAAGTATAGTGAGTTGCTATGTAAAA---ATGCAGTTATTAGAAGACAATGGAATGACACATTTCTTACTGTGTTGGCAGAggtaaaatttgaacagaataAGG----------GACTGATACAATCCATAGTAG------------AGTCAAATAGTAGTATTAACCTCAGAGAAGGTAACTTGCTGTTGAACTCAAATTTT----------TGCAGTGTGTGATTATTGGGATTTTccattcttgttttaactgaagctgagaatatataaaaatgtattacaga--------ttATGATTTgactctttaaaacattttttcagaatactgcatactttagaaaaataggtaatttaatattttcatcaagCATACTACATATATGAGTGAAGTCTCTCATGAAAAACAAGATAGTAAGACAATTATGAACATTTATGCATATTAGGTAAACAGA--ATAAGTGTGTCTAGCATG-----TGGTTTG-GATCTTACCTTTTGAACTGTGAACAGTCATTGTTACACAGTTGTGTCTGAAATCACTTCAAAGTGAGAGAAAGAAgttcttccttgtttcttttgaatttctttttctaatgagTTGGTAATGTCTGTAGTGCTCACTGCTGATGTAAACCTGATAGAATTCTCATCTCATTTAGCTTCAGTCTCAACAGGCAGACAATGCCCAGTGGGAGTGATGATTAAAAAGTAACAACAGAGGCAAAACAGTCATGGCCAAGCCCGATCTATAATAGGAACTTTACTGCTGTTGTGCT-TCCTGTCAGTTCAGAGAACACAGAGCTTTAATTTTCAACTATTTTTGTTGAATGATAGCCATACTaaagagacagcaaaagcaaagaaatagtGGACACACTTCCTTTTGATCATGTTCCCAGAGCGCCACTATAGGAGTTCTAGGCTAGAGAATGAATCGGGTGAGCTGTGTTTCTCCAGGTGTTAGGtgttatttataagaaaaacaatgtagTAACTATTTCTTGCATATTGATAGGC-AGCAGGATGGTAAGAAAGGAAACTCATCCATATACTGTACAATTA-CTTATGACTTTCTgatatc-tattccattgattttgtAATCACTTGAGAAGAATAGATCCAGGGCTG

a score=36647
s chr3           155578109 1354 + 160039680 TATACAGTGTGTAGGGGAAAATTGATGTATTCAAATAAAATGCATTTGCAATATAA-AATGTCTACCTTTTTTTCTGAAAATGTCAGCAATTCACGTATGC-----CATGGAAAGCATGCTGCATCCATCGTATGGTTACTGAGTGACTGCTGCTTCTTGTGTCCTCTTC--------CAGCATATCC--TTACAGGGTGGTGAGATTATATATGCTCCTTCTTGTCCTCGGGAGACTCACTGTGACATAACAAACATTCAAAATTTTTGTAACATCAAAGGTTGTTACAAAGTGCTTGAGTTCATATTCAATCCCGCCCCTGAATAAAGGGTAAATGTACAGAAAATCT----CACAA--------------------------------------------------------------------AACAACACA---TTTATACATATGGCAGGAACTGGTCTGTTACTGCTGAAATGAGAGA-AAAACAGTTTCCCTGGGAACAAGGCACCATGT-GAAAGGGCAGTCGCAGATAA---TCCCCTCCCTTGTAGAAAGCtttggttttgctctgctttgttttgtttttcttgctttCTGATTCTCTGTTTGCAGAT--GAGCTTTGATTAAAAAAAAAAAAATCAGCTCCTTGCTCT---------GGCAGATAGACTCAGCAAGG---AGAGAGACACTGACAGGTAGCAGCTTGTACATCACTCGGAAGGTCTGTATCTCAGCACTGATTGCTATCTCTGTGTTCCCAAACTATA----CTTTTACCTGCAATTACATTGAAAAAAAAAAAGAATGTGATGAAAAGAAAAAAATATATCTCTGGGCTTTGTTCTTCGTTGTAACTATGTTTCTAGAAGGAGTCCTGAGAAGTTTGTTTCTGGGCACTTGTTCCAAAGGTTTTTTTCACCACAACAAAAGTAGCAAT--------------GGGCAGCCATCAGGGGTGGCAGGAGTCTTTTAGTAAAATAAAAATCCAGCTGGTGGGATAAATGCGG---TTTGTAGCCCTCTAGCCATAGGGGAGTTGGTGGACATTCGTCATGCTAGGTTAACAGTGGGTGAATGGAAAATGGTTTAAGGTAATTTCCTAAATGGCAAACTGCAGT-GGTATAGATTTGCATAAATAGCAAAATGCATTAAAACACTCTTTCTTTGGCCACCTACTTTTTTTTCCTCAATACTTCTTTTGAATTACTTAGAAAATTAGTAGCTACAAAATTATATCCATTCAGTGTGGACCCTGGGAGCTACTTGGGAAGAGTGGTAGAAAGAACTGGACTTCCCTCCCCTGG--ATACTGGGCAGCAACCTTTGTTGCCTTACATTTCAGCTGCCTGTTTGCCATAAGGTCAAAAGCCTAATAAACATGGAAAA--GGATCTTAGAAA--TCCATGAGGAAAAGGCACGTTCTAGGTAGAGTTTAATGTGGCACAAATTTCAGGTTGAGATAA
s HiC_scaffold_1 142664497 1376 + 233722169 TGTACAATATATAGGAGGCAGATAATGACTGGAGACCAAAGGCACTTGAAGTATGAGAATGTCAACATCTTTTTCTTAACATACAGACAA---ATGTGTACAATTTTatgaagagcatttttctcctttctcttaa----------------gCCTTCTGCCTCCTCTTTGATGTTAACATGCTATCCCATCACACTGTGATGTAATCATGTTTAC--CTTCGTGTTTGCAGGAAATTCA--gtgacaaaataaacctttgaaaTTCAAATATTGTCCCTTGTTGTCTCCAGGTGCTTCAGTTCAAATTCACATCCTCTCCTACAGAAA-------TGTACAGAAAATATGAAACACAATGTCATTTCAGTGTGACTGAATCAGGTTTAAGATTATAGTGTGAAgatcaaaaagagcaaaaagtaaaaacagtgcACAATCTTTTCACATGACAGAAACAGGCCTGCTTGTGcacaaacaagacagaaaatgattTCCATAGGAACGAGGCATCATGTTGAAAGTAGGATTCCTGATGAGTTCTCCCTCCATTTCAGAG----------------------------------TTTCTCTCAGATTCTTAGCTTGCAGATCCAAGTTTGCAT--------GGAAAATCagctatttcttctttcaaacttGACAGGTAAACTCAACCAGGGAGAGAAAGATGCCAACAGAAAACAGTCCATGCATCACTCAAGATGCTTACACATCAGAAATGATTCATATCAGTCTGTTCCCAAACTCTATAGCCCTTTACCTACCactgcataaaaaa---------------taaaaagaggaaaatat--cttTGAGCTTTACTTTCAATGACA--TATGT----------------AAGACACTTGCCTACATGTACTTGTTTTAAAGGTTTTT--CACTAAAATAAAAGTGGGAACCTCTACGTGGTAGCTGATGACCATTAGGGA-GGCAAGAgcctttggagaaaaagaaaacacagctggTGGGATAAATGGGGATTTTTGTAGTGCCTTAACTGTAGGGAAGTTAGTGGACATTCATCAAGCTAGGTTAATGGTGGGTGAATGGAAA-TGGTTTAAGGTAATTTCCTAAATGGCAAGCAATAGTAGGTATAGATTTGCATAAATTGCAAAATGCATTAAAAGCCTCTTTCCTTGgtcacacacattttttttctcatgactTCCTTTGGACCCTTCAGAAAATTAGTAGCTACAAAATTATATTCATTCAGTGTAATCCCTGGGTACTACATGGAAGGAG-AGCAGAAttaaatgaatttctgtttttaagccAGATTGGGCAG-GACCTTTGTTTCCTCTCGCATACTCTGCCCACTTGCCATAAGGTTGAAAGCATAATATAGCTGGAAAAAGGAAGCTTAAAAAGTGCTAGGAGAAAAGGAGATGCTGTCAGTGCAATATAATGTG---TAAATTTAGGGTAGACATAA

a score=23007
s chr3           155586711 885 + 160039680 ACAGGCAAAGGGTTTTAGGAATCTTTGGGACCCT-GAGCAGGAAGCAGGTAAAGTAAA-------TTAAAAGGAGGTGATTATGAATGTAACAATGAAATTTAAACTTGATCTGTGAGGA---CATTCCAAGGCAA-GTGGACAAATCTTTTCTCTGGGAGTGAGTGCCCTTAGGTGAGGAATAATGTGAAACTCATGGTTGACCTCTATGTTGAATTTTATGTTTTTAGTACTTAAAATATATCTGTATACCTAAAAAAAATAGAGGACAAGAACACACTTGTGCGTACATGTGT----------------------TCTGGAATTGTTGGGGTGTGTGCATGCTCTGGGAA---------AAAGAAAGAC----CTATACACACAGTCTGTTTATTGACAGAGGGAAAG--TGTGTATTGTTCAGAA-ATCCCCACTAAGTCTTCTGTCTTCTCAACACACTCTTTACTTGACACCAGGAAG-CTTAACAGGCCTGTTCTATCAGATTCTGCCTGCTGTGAAATAGTCTCAGACCAGAAATGTGGAAAATATCAAAAAGACTTTTTAGCTGGTTTCAGAATGAAGGTCACATCCATATTAATTGCCCTGGTACTGAGGCCCTCCTGGAGACCACCTGTCAGAACATCTGGAGCTGTTGTTGTGGAGGCTTCTA-CCTACCACCGTTTCTACCTCTGTGCTGACTTCAAAGGCTCATCAGAGTTGA-----AGGACCTGGGAAGGGCATCTGCCTGGATTCACTGGTCCAGGATAGGTTTGCTCCCATAATGTTCACATTTATTTTTACAGTTAGGGT--------------------------------CTTAGGAGAAATGATGTTTGGACAAGATTTCACT-AGAAAATA----TGATTTTCTAAAGTTCTCTCTAATTTCATGATGAATATAAATAAAAATCATCTG-TTTCAATGCCAATAGATTGAGTGCAAT
s HiC_scaffold_1 142674063 959 + 233722169 ATAGATAGATGGTTTTGCAATGATATGAAACCCCAGAGAAAATAGCAGCTAAAGAAAAGGTAGGTTCAAAGAAAAGTTTTGGAGCAAGTAACACCGAAGTTAAAATTTGAAATCTGAGCAATGTAATATAAGTCAAAGTAGGTAAATATATTCTCGGTGA-----TGTCACCAGGCAAGGGACAGTATCATAC---------AGCTCTGAGATGAATTCTCTATTATTAGGCTATAAAATGTAGCTGCAT-TCTCAGCAAAGCAGGGGAAAGGGGTACCCATGTGTATAGATTTGTagaggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgaacAGAGTGTGAATGGAGGGCACGTTTCTAAATGTAGCTTGTC-ATTTATGGAAGGAAAAGCTTAACGTCATTTAGAGCATCCATGATAAATGTTCTCTTCCCTCAACAC--TCTGTATTTAAAATGAGGGAGACCTAATAggcttgttctgtttgctcttgACTGCTGTGAAATAGCCGCAGCCCTGAAATGTGGGAAATATCAGAAAGCCGCTTTGGCTTGTTTCTTGATGAAGGTCACATCCATATTAATTGCCCTGGTAGGGAAGTCTTCGTGGAGGCCACCTGTCTGAACATCTGGAGCTCTTGCTGCCGCCGCTTCCAGTGCGGCACCATTTCCATCCCTGTGCCAACTTCAAAGACCCATCAAGGTTGACACTGAGGATCTGGGAAGGGACACAG--TGGATTTCCTTGCCCACACTTGGGTGTCTCATAGAATATTAACATTTTCTCTTAGTGTGAGGGCGTAGTGAAGAAGAGCTCatttaaatttgattatttttgcaAAATGACTTTTAGacaagtatttattaaaaaaataccatTGATTCTCTACTTTTGCCTCCAGTTT-GTGTAAAGTATAAATCAAAATGATCTGTTTTTTATGTCAATGAAATAAACACAAT

a score=27153
s chr3           155594491 1299 + 160039680 gaaaagggggaggagagagggagggaa-ACAATAAAGATAGACTCCTGAA-----TGTAGACA-------GCTGTGCAAG-------TGAGA-GTGTGAATTTATTTAATTACTGACCAGGATCCATTCTGTGTAGCAAAAGCCCACAATATTCAGAGCTGTGTT----TGGGAGCCTGCACTACAGCCTTTCACTGGG-TGTCTGACGTT-AGCAAGATCCTTCTGACCACTTTAATTTTCATTGTTCATTGAAAA---AAACCTGCATTTACGCTAC-----CACTTCCAGATACT------------GTATCACAGAATACTTCTGTGCACACTCTTCATCTTTCTTCCGAGATAGCTGACTGTTCAGTACACTCTGTGAACAAGGTGGAGAGAAATGAGTTGATTTTCAGACTTTGTCAATCTGTTTCCTGGGTATCTATCTGCAAGTCCTGCAGCTCACTCAGGCTTACCTCACAAAGTAGCAGATCTCTCTCTTTAGGGCAGACGCATC-ACTGCTAGTCTTATAGAACCACCAAAGCCATATTCCTAGCTGCCTTTTAGAGTTGATTCATCCCCCCATGTGCTCAAGGAGGCGTGACTAAGCCACAAGGCCTGCAAGAGTCTCTGGGATTGGAAGTCTTTTAATAGCTATGGAGCCTTGTTCTAGCAGG--AGATTGATTAAAGTGGTACAGCTCTTATAATTTACTTTATATATATAAAAGCACTCTTTACATACGGAAATGAACCTTCCTTCTATCAGGCAGCAGCCAGGCACCTTTTCACATTATTTAACTGCAAAAAGTATTCAAATGAAAATACAGGGCCTCAGATTGGGCTTGTGCACATAACTTTCATTTTGACCTTGACTTTGCCCATGGATAACTATACTGGGTAAATTAAATATACTAAAA--CTATGTCCTTAGTGG-TATCAAG------ACTCTATC----CTCTCCTCCAAAGAGCACAAAAGGTTAAAAGAAAAGAAAACAAAACAAGAAAAATCCCTCTGAGCTCCAG------------------AGGAGTTCGTTCTCAGCTTTAGCATCATTTACTCTGATTTAATCTCCAGA---AAACAGGAGTCTATTTTGTGACATGCATTCGATTATGGAGACCTTA-----CTAGGATAGTTTCGGCACTTCCT--------GCATTCCCTCTGGACCCTGAGCCCTTGTATTCC----CCTGTCTCATCTGAGCGTGGCACTGGGAAGAAGTACAAAG-------GGCAGGG-----ATCCTGCTTCTCCTGCCTCTT-CTGTGCCTCTTTCTTCAGCTTAT----------TGACATGAGATCACTTTTCCATTCTCAGAATATACCGGGCACTTTACTCCTCTCTGGTTT---TGTTAACATCGTGCTTCCCATTTAGATG
s HiC_scaffold_1 142679988 1338 + 233722169 ggacaGGATGGGGATAAGGAGGGGAAATACAGTAAAGATAGGCTCCTTCAGTGTCTGTAATCACCAAATCTCTGGGCCAGCTGATCTTGAGGCATGCTGACTGCTCTCCTTGTT--------TTCATGACATGTAGAAAATACACC----------GGCTGTGTGATCATGGGCTCTTGT-CCAAAGTCTTCCATGGAACTGTTTGACCTTGAACAAG--CACTATGCCTGCTTTAGTTTTGATTCCTCATTTTAAAGTGAGACTTTGTCCGACGCTACTTCCACAGTCTTGGATGCTCACAAAAGGTCTGCACCATCCTGTTGTCCTGTTTGAACCTTTCAGGCTTTTTGCT-GATAACCAGCTGCTCTGTGCATCCTG-ACTCTGGAAGGAGGGTAATgaatttatttcaaaactttGC---TGTGTTTCCTAAGGATCTGTCTAGAAG-CCTGCAATTCACTCAGGCTTAACTTACAAAGTGGCAGATCTCTCCCTTTAGGGCAAACACATAGGCTGCTGTGTTTACAAACGCAGCAAAGCCAtagtcttctttctcttttaaagtttATTCAT-GCTCCACGTGCTCAAGCAGGCATGACTAAGCTGCATGGCATGCGGAAGTGT-GGGAAGTGGTAGCATTTTAATAGCTATAGAGCTCAGTTCTAGCCATACAGATTGATTAAACTGGCACAgctctta-aatttattttgtgcatataaaggtaatttttacatataaaaatgaaaccttCCTCTATCAGGCAGCATCCAGGcacattttcatattatttagCAGCAAAAAGTATTGAATTGAGAATTCAAAGCTGCGGGTTAAGTTTATGTACTGGACTTGTTATTTGACCTTGACTTTGCTGGTGACTGactaaaaggggaaaataaagcaTAATGAAAACCTATGTGCTTAATAATTATCAAGTAGGTAACTCTTTCACATCCATCCTCCA---------------------------------------------CCCTCTGTCCTCCAAATACTATCCCACAATTTCAGAACTCATTTCTTGGCTTTAGTAGCTATTATGTTGATTTAAGCCTCAAATCCAAAGGggtaatatttttaacatataaatttGATCATG-----CTTAAAACTCTCATGTAGCTTTGCCTCTGAGTTGATCAAAGAAATAACTCTATAGCCTG-GCTTTTAAATCCTTTTGCCAGTCTCATCTCATCCT--CTCTTGGAGAAGATCAAAAGTGGTCCCAGCAGGGTCTCTGTGCTGAGCCTAGCGCCTCTCACTACTCTACTCTTTTTGGTGTACACGGGGCCCATTCCATGGGACTGC-TCTCCACCCAGGAAGTACACCAAGCGCT----TCCTCTGCAGTTTCTACACTGATGCTGTTCCCTCAGTTTAGATG

a score=19132
s chr3           155628742 721 + 160039680 ATGCAGTTACATTTGCAGATACATAAATTTTATCTGGATAACTGCATGTCAGTTTCTTAAAAAATGTACATGCTGCTAAGGAGCATCTTATTCGCATACCAATAAATCACAGGATTTCCTTGGCTTAGTTGTCATGGATACATACCTTTTGTTTG----AGAGATCTATCAGATGTGTTCATTTTAACCTTTGCTTAGCATATCTGCAGCGATGGTACAGGTATTTCAGAGTAGCAAATAAAATTAAGTCACTGTATAATTTATGCTTAAAATATAAGCACCTCCA-CTCCATGTATTTTAATAAATCAGCCCTTCCTGGCAT-TTGAGATCCAAGAAACTAAGTAGTGTGCTAACAGTTCATGAG--------------------------TTGATGGATATGGGATATGGGCATAAGGTGC-AGAAGGCAGTATGACCCAGGGAAATAGCAT-GAATAAG-CACCACACCTCCTCAAACACCACATCCTTTGTTTTAAGCAGA-CCTCTGTCCTGTGGAGAGTGAGCTTTGCAGG----------TCCAGAT---------CCCAACTCTCA--------CTCAGTTCCTACATCCTATTATCAGTGTCTTTATTATGTTATCTTCCTGTGTTGGCACAC-CCATGAAACTCATATAGTTTTATCTTCAAGCCCTAAACTAGGAAAACGTGGCACTGTAACTCTACTTTGCCATGCGTGAAAGTCACTGATACGAAGGAAAAGGATTTTAAAAAGAACAAAGAAAATATGAGTGGAATGGAAG
s HiC_scaffold_1 142709511 759 + 233722169 ATGCAGTTATATTTACACATTTATAGTTACTATGTCAGTAAATACATTCCAGTCC-----AAAAACTACATAATGCTAAAGGGTATCTTATTCCAATACCTAT--------GGATCTCGGTGGCATGGTTGTCATGGATACaccccttttgtttgtttgagagagCTATCA-ATGTGTGCATTTGAATCTTCACTTACCATATCTGCAGTGATGTTACAGGTACTTTACAGtagtaaataaaattaagcaaGTATGCAGTTTATGCTGAAAGAATAAGCACATTTACCTGCATGCATTTTAATAAATCAATGCTTACTGACATGTTAAAAGACAAGCAAATAGGTACTATATTA----TTCAAGAGAGAATGTGTTTTGCAAGACTTTAGCTTTGCTTGTAATATCATAT-TACTTAAAGTGTGGGAAATCATCatcctttagaaaaataaaagaaaataagacaccaCACGTATTTAAAAGTAATATGTATTCTTCTCAAGAGagtgtttttattataaaatgtcaGATGTATAGGTATTTTACCTTCAAGATAGTCAAATCCCCAGCTCTCACACtcattctccttttctccttcttat-----GTGTCATAATAATATCATCTTTATGTGTTACTAGGTgccatgaaaaatatatattacaatcTGCAAGTGCTAAAAGAGCAAAGCTTAGAGCTGAGGCTGTATTTTTCC-CATCTAAAAGTCACTGACACAAAAGAAAACGA-TGAACAAAAAGCCAAGAAAGTATGCTCTAGATGGGAG

a score=5397
s chr3           155630800 312 + 160039680 ATAAAAATTCAAACACCCACTGGATTGTCTGCAGTACAATATACCTCAAATAAATATTCTTAGAAATTAAACTATCCCAGAAAAGATCAAGCCTAGCACAGCAGTCATCCCAATCCTATTTTCCTGTGCCACTTAGGTCATTGACAGCCAATTCACTGAATGAAATTAAGTCAGA-TAGGTATA--TTTCATGAAAACACATTCTGTATT-TTTCAATGTAATCTCTGGTTAGGATAACCCCTGTT--------AGCACAGAATGATTCAATGAAGATGGATGTTCTCCTTGTACTCATTAGAATAGTTTTAAATTACAGGTTA
s HiC_scaffold_1 142711497 299 + 233722169 ataaaa---caaatacaca----attGTTTTCATTAAAGTGCACTTCAAATAAATAGTCTAGGAAATTAAATTAGCTCAGAAGAGATCAATCCTAT--CAGCTATCA---------------CTTACTCCATTTATATCAATGACAACTGACTGGCTTAATACTTTTAAATGCGATTACatagaatttttaagaaaatgagtttTATAGGATTCCAGTAGAATCTATGTGTTAGATACTTTTCATTGTGAAGCAAGCAAAAGATTA-CAAAAGGAGATAGGTATTTTTGTAGCctttattaatataaattgtGACTGTTGATTA

a score=8971
s chr3           155638018 564 + 160039680 CTCATTTG---CATCATTTC-AGGGTGAGAGGGGAAAGCAGGCTGGATGCCTGCATACCTGATCAAGAAACTTAGGCTCTTATAACCCATTATAAACATTATAACTCCAAAAAATATGTGAACAGCACATGCATGGCATTTCGTTC-AGTGATAGTGTGGCAATTATAGAGGACACATGGGAGTTAAATGGTGTTAAAGGTTATGTCAACATGGATGGAAAATACGCATTCACTAGAGGGAA--CACAGAAATCAAAACATTAAAAGGTGAATCAGTTCTGACTACGGAAAGGTTAACATAACCACA-GTCACTCATTACAGCCTG---------TTGAGGAGGAATGACATGTCTATTTATCTATCCCTCAAAGTCCTTTGGGTGTCCACTGGCCA----GAACTTGTCTTCACACCTTGTAGCATAGGGTTCTATAGTACTGTACCTAGGAGTGTTT--ACTATTGATCTCAGCTTAGGATGTTACCACATTTTATTTAAGTTTTTGTTCCCAAACCTTAGATATGCATATAAA----GCTTTCTTATGCTCTAAATTTTCATAACCATGTAGAAGCCTTAATAGTAAA
s HiC_scaffold_1 142719220 565 + 233722169 CtcatttatgacttcatttccaGAGCATGAGAGAAGAGTGAACCGACTCCCTGAAAACC----------ATACAGTTCGTGCTAAAGCAG-ACGAACAGTGTAAATGCAAAAA-TATGCTCCAGACTGAGGcagaacattttatttgaagGACAGCACAGTTAATGTAAGATACGCAAAGAAGGGAGATCATCTTAAAGGTTATGTCACCATGGAGGAAAAACATACATTCACTACGGGGAatgtagagaaataaaaacattaaaaggtGAAGCATGACTTAAAAATGAAAGGCTAACTTAACCAAATTTTGTTCATTAAAATCTGGAAAGcaaactgaagagaaagatcaCTCTGGTCTCTGCACTGCTC--------TTCTGTGTCCACTGGTCATGTGGAATTTGTCTTCAGA----ATGTCAAAATAGCTGAAAATACATAATCTAGGAATCTATGGACTCTTGTTCCCTGCACTACATGGTGATGAATGGCATTAGAGTATTT-TTCCCACATCACAAAAATTTATATGAACTTGATTAGCTTATGCCAATATTTCTTCCAACCATG-AGAAACTACAATAGTGAA

a score=23100
s chr3           155641620 1019 + 160039680 GTCTGACAGTCATTTTGGAAACAATGGCCCATAAGCTGCAT-----AACTTTGGAGACAAAAAATAATATCATTGTAAGCTCTGTCATCTGACCCACTGTGCA------TTCCAGACATTGTTTTTATTGATAATCTCACAATT-----AATTTATCTCTATCTGATAACCCATAAAAGGGGGTAAGTAGAACTGGGAAATCAGGTGGCCCTCTAAGTGCAAGGGACCTGTGGAAACCTTGCTGTTTACTATGCTAATTACTCTGGAATTCTAAAGATATGGCACAATATGCATATTTCTGGAATTCTTAGTTTTTAAGTCTGAGCAGGACTCT----ACAATCTAAATGTGTAATTATAATC-----ATTTTACATGAATTAGACTTA--TGGGTATACATAATACATTTATGAATGTGACATATAGTTTGTTCTTAGCAGCTAATATTCTCCAGAGGAGAGCTAGTCTTGCTCTAGTATCATTTGTGTTAATAGGTAACATTTTTGTGATTTTTTTTTTTTTTAGTGCAATGAATGAAACTGAAGTCATTCATTTTTCTTTAGGGAGCACCATTAATGCTGTTTCCATAATACTTGCAAAAATATCTTAATAGAAATTCTCCTTTTGAAACATGA-ATTGAAGAGATATTCCTGAGAGCATATTTAGAACTAAATAGAAAAAAAT--ATTAAAGTCTGAAAATCAAAAACAACTATGCCTTTCTAATTATATGTGCAGAAATGCACATAT-TGGGTTCAAGTAAAAGTCCTTTGATTTATTAAGTCTGTATTGTATAAAGCTTTTGTTCTGAGATACTGTTTGA-TAGGATCACAACTTGG-AATTTGCTCTCATTTCTACTTCCAGCAGTGTGTGGTCAGATGGATCAGGCATGGTGCTTACTGA--TTTGTAG--------------AGTTCC----------------------------TTCATGTGACACATTCTCTTTTTTCAAGTCAAGATGACTCGGCTCTATA----AAGTAAAAGCTGAAGTATCAACATCTAC-----------TCAC---------------TCTAATATTAAACTAACATATTAATGATTTAAAAACAATATGACATTCTA
s HiC_scaffold_1 142722821 1078 + 233722169 GTGTGATAATCATCCAAGAGACAGTGGTTTGTGAGTTGCACTTCAAGACTTTGCATCTGACGGGCAGGGTCAAAGGAGGTGCTGCCATCTGACTCATTCTACAAAGGAGTAGGAAATGCAGCTCTTATTGAAAATCTCCTaactgtactaatttatattcatCTGATAAGCCATTCAGGGAAG--AGTGGGAACGAGCTGGCAGGTGGCCTTTCAGATATAAAGGGCACATGGTA--CGAGTTGTTTGTTGC-TTACACACCCTGGAATACTAAAGATATGGCAGAATATGCATATTTCTGGAATTTCAGAGTTTTAATTCTGAGCAGCAGTATATTCATAATCTAA-----CAATTATAATTTAGAAATCTCATTTAAGTGAGACTCATTTGAGTGTGTTTAATAGATTTATGAATGCCGCATGT--TTTGTTCTTAATAGTTTATG---TCAAAATTAGAGCTAAGATAG---TAATATTATTTATG----CAGTTTTAAtgcttataatttctttttttttcaggttaatGAACAGAAACCAAACCACTCACTTTTCTTCAGGCTCTGGCTCTAATGTTTTTTTCATAATGCTGGCACAAAAA--TTATTGGAAAATATCCttttgaaatatgattttaaaaagatattcctGAAAGCATATTTAGATCAAAGTGAGAAGCTGTTATTTAAAGCCTTCATATC-AAAACAACT----TTCTTTTATTGCATGTGCAAAAACATACACATGTAAGTTCAAATAAAA--CCTT------------CCTTTATATTATTAAGCTTTTAATCCTGTTGATTGTTTGATTATCATAAAAGCAAGAtaatttcatcatattttta----gAACAGTAC-CAATCtgattaagaaaaaatgaaatttatagacTCTTGTGGGTGTATTTGACTCAAGTTCTACAAATCAGTTTGAAAAATAACGGTTGAACCATGTCATAAATTGTTCTATTCCTAATCTATTTAACTCAATTCTATATTTGAAGTAAAAGCTAAGACACAagcatcttcatttttaaatgtcacatttATTCATCTACTTCTAATATGTAattaatattctgattttttaaaaacaatatgacATACTA

a score=11550
s chr3           155659426 541 + 160039680 CTAGAATCTGTTTATGCAAAACAGTCAGGTGACT-TTATAAGTGAAAATTTTTAAA--TAGTTATTCTAA--------AGGTAGAGATAATCAGTTTTTTAATATGT-GGAAAATACCTTTCATTAAATAACACATGTTGTTTG-GAGTAGGTAAT----------------ATGAACT-AATTGTCTCCTGGAGACAGAGCATA----AATGTAATTA---ACCATGGTACCATGCAAAACTGTG----------AGTCCTGCCCTAGA---------AGTGATGTTC--TTGCAGAGGATGGAGATAAATTTTCCAGCACATGCCTTTGAGGTAAGAACTGAAAAATGTGGTAGAATTTAATAGGCAGGGAAAAGTTGAAGACAGACATTCTGGG---GACAATGGCTCAGAGCAAACACAGGGAAATGTGAATGAGTCATAATGGGCTCTGGAAAATGA--CAGATATATGAAGGGACTTGAACTC--AAGAGGGAGGGAATAAGTTCTCATGTCAGACTCCCATGGCTTCAGTCTGGTACAAGATTATTCCCTTAGTGAATACCTGCAGAGTAGAACTAAATAGTATCCTAAATATTTAACC
s HiC_scaffold_1 142751964 591 + 233722169 CCAGAATCATTTGGTACAAAATATTCAGCTGATTCTTATACACATTGATGTTTAAGAGTCACTGTTCTGAGCATTGAGAAATTGGGATGCTCTCCCTTTTATTGTACAGGAAAATTCCTTTCATTAAATAGTGTAGCTTATGTGAGGGTAGATACTGTTATGGGATGATCCAATGCATTCAATTCCCACTCACAGATTAAGGATATAGAAATGCACTTGGAGAGCATGGTGATGACTAAAATTTTGTACCACTTACGGCACTGTTCTGGGGTGAGAATGATTAATGGTCATTCACAGAATATGGAGGTAAATTTCTGAGAGAATGCCTTTGAGCTGAGAATTAAAATACAAGCTAGAGtttaatagaaaaggaagag------agaagcctTCTGGGTAAGAGAATGGCTCAGAGCAAAGGCAGAGAAATGTGAGGGAGACCTAATTTGTTCTGGAAACCGAGGTAGATGTGTGACAGGAATAGAACTTGGAAAGGAGAGGGAAGATGTTCTCTTGGTGGATTGTT---------GAATGCTCCTTGATTGCTTTATTCGTGAATGCTCACTGAGTTAAGCTGAATCTGATACTAAATATTTTACC

a score=29688
s chr3           155662030 1887 + 160039680 AGGGCTAAAATCCAAGTGTCAACAGTGTGGGTAAAGCCCCATAAATTTCTATTACTTTATCATGTT--TAGTAGAAA-ATA-TGCTTGTTTCCATGCAAT--AATCACCAGGCAAGGAAGAACACTGAGTAGCTTTACCTCCATCCAGAACAAACCTATTTCATTGTCTCCC-TGAAGATGGTTGAATGCATTGCTAGCCCAAAGGATACTTGGGGACTTAGGGATAAGTGGCCGAGATCCACTTGACTTGCTTCGTCTGACCTGTCAACCAA-----ATGCTGTCCCACTGAAAGTGATCTAG-AAAAGAAGGAGGGGCCAAAGTCTCATT-TCCATTCTCTGATGTCAGTTGCTGATTTGCATGTTTCTTGGCATTGTTGGGATAGTGCAGATGGCTTATTCAATCCACACAGAA----TTTTCTTTGCCCAACACTGGCTAATTTGTATTGTAGAAGACAGCTTGCCTCAGGGTTCCCAGCAATTAGAGCTGCCATTCTCCTAGTTGAACACTCTCTTGAGTCAGGA------TAACAGCTACCCTATGGCTCCTATCTAGGTGGCCATGCT------TTGGTGCCTGGAAGTGCCTCTTTGTGTCAAAGGATTATTTGCAC-----AAGTCAGCTGAGTGACAGAGCCCTCACATAATGCACTTTCCAAATAACTGAGGTGTTCCAC--CCATTTTGTGTGCTTTTCAGAAATCTTTCTTCCTGGCTGGCCATGTATGCCCTGAGCTTTTGGATTTATTTCTTCTTTCCTCTCCACTGGCAGCCTCTAACCTTTCTCATACTCTCTGCTGGCA-ACATGTAACAGTCCACCAACCAAA-GGAAAGATATAATTGAAGATTTGTGGCACAAAGTTTTTTTCTTAATAAGCTAATGTCATCCCTTTTCACAGCTGTGACAATTAGGTTCAAGAGGAAGCCAGAAGTTCCCCTGAGTTCATGAGGCCTGTAAGCTGAAGCAGGAC-TAATTACAAGACAATTTCAACTTCTAGAGAAACCAGCATGCGTGCAATGTAGAATACTGGTAAAGCTAAGCTTTGAAAGCCATCCAGTAGCAATC-CCTAATCTCACTGCCTG------------CTAGCTCATGGCAAATTTACTTCTTGTCATAGACCAT-----------------------------ATGGATAATTTTATAAGGCATTCCCCGTGCTTTTAAATGAAATTATCTCATCTAGTT------------ACTTACAGAGAAGCAATGATTAAGTGTGGAACACTCGCTTTGAGCTGTATGGCTGATGTTTTCTGTGCTCTAATATTGTTCTCATGGTAAG-TGGGATGTTGTATCCACTTATTCTTCGTCATCTGTTTCCCAGTTCCAGATGAAGGTAAGAGACAAGTTATTGAGTGGTGAACAACAAATTTATCTTGGCATGACAACAcaaaaccatgatgagatattatccatcctca---tagtaaggacagctaactgctgaatg---caaaaagacagatgatagcttgcatggaataggtatgggaaaaggaacttagggacattgtggataggaatgt--cagtcagtggaactgatgtaaacactgttataaatatagtagtaatggaggacctagcagatgtatgaat-gttgcatt--------------------------ctgaaagaacatgcaacccatctgctgaagaagcttctgaattctcctgttaaatgcagcattgctcccaatggtaaagcaatgtgaacaacctaa----------ctgtcatctgctgatgaa-----taaaaagcctcaatatctatacagagtggaatattattgagctatgaaaaggacaaaaatcatatcacctgtgacaccttaatggaatcaacctatagataacaattcagtagtattggccccatcattatgtgaagtggaatgtcgggcacagaaatatg------------ttatttatatgtggattct---aaaaaatgttgatcacatagaaatcaagagtaa
s HiC_scaffold_1 142753310 1938 + 233722169 AGAACTATTATTCAAGAAATAAGTGTGGCATTAAGGTTT--TAAATTTGTGAGAGTTTATCTTGATAGCATTAGAAATATAATCCTTATTCTTAAGCaaataaatttcttgaagaaGGTGAGTTCAAAGTAGCATTAATCCTACCCAGTAGATGCCTATCCCCTTCCCCACTGTGAAGTCAGATATAAGGAGTGTAGTTCAAGAGGCCATTTAGGAACTTAACAG--AGTGGTTGAGATACACTTACTTTGCTTGTTTTGGC-TGTCAGACAGGCTGGAAGCTGTCTCACCCAAGATGGCCCAATAAACTATGGAGAGACCAAGGTCCTAGTGTCTTTTTTGTAATGTCAATTGcagatttgtttgtttcttggcaAGATCAACATGGTGCAGATGGCCTGT-----CTGTGCAGAAGTTGTTCTCTTTGTCCCACGACACCTAATTCATATTGTGGAGGATAGTTGCCCTTAGGGTTCTCAGCAATTAAAACTGCCATTCTCCCATTTGAATATTCTCCTCAGTTTGAATTGTAGTAGCAGCTGTTCTCCAACTCTTGACTACACAGCAGTGTTTGTGAGTGAGTGCATGTGTATCTCTTTTTGtttgcaaaatttattt-tacttttaaagtcaGGCAAATGAAGGGTTTCTCATATAATATGCATTTCACTTAACTGATATTCTGCATTACTCTTCCCAGTACCCTCCAGAAATATCATCATATGGCTAACTGTGCAGTCAGCAGGCCCTTGGGGTTGCTT-GCATCTCTTCTGCTCTAGGCATCCCAAACCTTTTCTGCATTCTCTAGTGACACACATGTGATGGTTCAAAGACCAAAGGGAGAGGCCTAATGAAGGTTTTGTATCACAG-----TTGCCTTATTTAACAAATGCCATCTTGGTTGCTAGCAGTGATAATGAAAACCAAGAGAGTTCCAAAAGTTCCCTTGAGTTCATCAAGCCTATAAGCCCAAAATCAACTTAGTTACAAACCAATTTCAACTTTT-GAAAAGTGGAAATTGGAACAACACTCAATAATGGTAAGAC-AAAATTTGAAAGCCATTCAGAAGCAGCCATAGAATCTCATTGCCTATGAAAGAGGTCTTTAGTTT---GTAGAGTTACTAGTGGCCATAATTCATAAATAGTTGTTCCAGCAAGAATTTTTAGAATAGAT-ATTTCAAAAAGGAATCGCTGTACTGTTCAATGGAACAATTCTATTCCATTGGCTCTTGCATAATTTACCGAGGAGCAATAGTGGACTATAGATCTCTTATTTTCAATTGTAAGATGACTATTTGGTTTGCTCCAATACTGGTTTCATGTTAAGATACAACCTTATGTCAtttcacacttt----tcttttttct-------ggcaaAGGTAATGATCGG------GAGCAATCAACCA-AAGTAAATactagaaatgcaaatcaaaagcaacatGAGGTA-CATACAACCTCAATCCAGTAGAAATGGC----------ATGCCTCAAAATGATAGAGAATAGC-----------AAGTGTGAGTTGGGATACTTACTAAT--------TATAAATTTTGCAGTCTTTTGA-------TAGGGACAGAGATAAATATAGCTATGATGGAAATACAA--AGATAGAACAATCATTGCATTTGCCAATCCCATTACTGATTATTCACCTGAAGGAA-ATAAAACCAGTATATTAAAGAGGCATCTGCAGTCCCGTGTTTGTTGGGTAACTATTCACTATAGcgaagtaatagaaaaaaaaaaaaaacatgtctctATCAACTGatgtttaagttttttaaaaatcaggaaacacacacacaaagaaatattcttctaccataaagaagagtgaaattttatcatttgtgACAA---AATGGATGGAACC---AGA-AACCATTAAGT----TTGGTT--------------AATGA---GCCatatacagaaagataaaaacttcatattttttcacatataaagcctaaaaaaaaagattgatctCATAGATATTGAAAAAAA

a score=14827
s chr3           155679961 991 + 160039680 TCACCAGTATCTTAATTCAGTACAAGATTTTACCATTTATCAGCTCATATTCATACACATCTCTGTGATAACAT-----------CTTCGACACAAAACATGGGTTTAGTACATGCTGTATCCTAAGCAAATACTGGTTGAATGAACAGATGGGTGAGTAAGTGGGGCATTTAAATTATGGATTATCTCTACAT-GGAAGAACACTTGGAAGAA-----CCAGAGCATT-TTATATTTAGACGCTATTTCTGACACATGACCTGGAGTTCCGGTATGTTCATACTAAGCAGAGAGGTGTTATATGCTTTATAAGGCAAAGATTTTTAAGCAAATTTTATATTTTACCTGATATTTTA-------------AGATGAGGAAGAAGCTGCATTACCTCAGAGGTTTGACTTTAAC----AAACCCTTCCTAGTATGGGCACGGAGTCACTGGTCAGCTGGGAAGCACTAAAACATGCCAGTGAGTGTGGCACCCCATGGGCATTCCTGGAATTAGACTTCTTCTTTCGCTCTCTCCTGATTTGACGATGCTTTTGCTCACCAGGTCCCAT---ATATAGACACTTAAGATCTGAATTTATGTATTGTATATCAAAATGAAGCT---AACTATTTTAAAGATCATTTTAAAATAAAAATAGAAGGGTGCTAGAAACAGTGTGGCTTGGAAA-GTGCCCATTTGGCACTTAAACAGGAAAATAATTTGTAGGTGCTAAGGAGGTAATTCAAACGC-----AGTGA-------CTCAGCCCCATCCTGGAAGGAAA-GGTAATTGAATTGCCTCTATCCATTCAGTAACTCACTCAGAATTCAAGGATTCATTATAACTATCAAAGTTTTATTACTTCCTTAGAGTCTAGGGTGGGTTTTTATTTGAAGGTAGTGGGTGATATACAGTTCACTTGTATAATACGACAACCATAGTCAGAAAATATGGAGCCTTGCAACGGCACCTTTATACTGAGATTATAGCTTGCCTTGTCTACCTGTTCCATTAAATAGGGAGGAAGAAAAAGAGGAG
s HiC_scaffold_1 142775772 974 + 233722169 TCATCAATATCTTAAT-----ATAAGAGTTTGTATCTCTTAGGACCATGGCCATGTCTATTTGATTGGTGCTATGTATTCATTAGCTATGACA--------GGATTTAGCACATCTTGTATATTAAATAAACAATTGTTGAATCAATTAGTGGTTCAAAAAA-----CAGTTAAGATGCGGATTGTTCCTAGAGAGgatgaaaaatctgaaaaaaaaatttagctcgTTATTATGTTCAAAA--CAGTTCT--CAAACCACC--------CTATATACCCATATTA--CCTATGAATTTTGTACTTCTTGAAAACACAAGCTTTTTC--TAAACTCTAT------CCTAGCAACTTAGAGCATGgagaacagaagaacaaaaggtaATATTATCCTCATGGTT--ACTGTTACCAGAAAAATATTCCCGGAATAGTTAGGAAGTCAGTGTTCACCAGGGAAGTG-TCAAACACTTCCTTAGAAGCTTCACTGAA--GTCATTTGTTGGAGATCCCCTGTTcgttattttgcatttactttggTGATGTTATCTTggaatagtttcttttttatttctataattag----tgacttt------tgtattttaaaggaaaaattaaaagcattttaatgccctttt--aaataaaaaggtaaaacatTTGATAATAGTG--ATTTGGACACATGATCTTTTAatgctaaaatagaaaaataaatcataggtGTTACAAACATAATTTATACTTGGGTAAGTGGATGTTCCCTTTGCACCATCTTGTAGGAAAAAGGTAACTAAAATTCTTGTATCCATGCAGTAACTCACTTGAGACTCAAGCACTCATTATCACTATCAAAGTTTTATTACTTTCTTAGTACCCAGGATGGAGTTTTATTTGAAAGTCCCAGGTGATGTATGGCATA-TTGTATAATATGACACCTTAAGTCAGAAAGTATGAAGCCTTGCTATGGAGCCATTAGGTTCCATTTATAGCTTCCCACATTCTCTtgttt------------agagagagagagaggag

a score=24168
s chr3           155683414 1768 + 160039680 AAACTCACATTTGATTCTGTTCTGTTA-----------TGGAAATCCCATGTGACTGGGACTTGCCACTCTCTGTCATGGCGGTGCTGGATTCTTTGTCATCTGTTGCCAGAGAAAGACAAAGCCTCTGCAAACACAGGGGCTCATTGATTTGCTTCTGAAAGTGTGCCTGCGTATCATCAATCCAG-AGTGTCTGCTGAGAGCAGAGATGCGCTTCCC------TTTTAGCAAGCT---TGGCAGGAGCTGAGGTGGAGA----AGGGAAGGGTGAGCAGTGAGCCGTGAC-TGTGAGCTCAAGCATTTGTCCACGTTCTTTCTAGTATGTAACTGTTTATTCTCTTTCTTAAAGGTTGATTTATGAAGTCTGACAGGATAGTCTGTAAACTCAACCCAGAGCTACTTGGAGAACAAGAGAAGATGATATATTAAGTCGCAGTGGCCCAATTGTTTTGAGATATTAAGTCCCAGGCTGCAGCAGGACAAATGAAAACTCATTAGAAGTGAATATTGATGTCCTTCATATCTGAAAATGGGGTTTTGAACAACTGCCAAGAATATCTCTGTAGGC-CCCCAAAGGCTGGCTAACCTGTGCATGAGTGGTCAGTGTCACCCACTGGCCTATGC-ACGGGTGCCCACTGGCTCTATTCTTGTATTTTATTTTCTGATAACACCACAAACTCCT----------------------CTCAAAACAC----AGGTTTAAACTTAGCATAAGCTGTCAATGAGTCACACACAGAAGTAATCTACAGTGTTTAATTTTGTGCATGACCAGTTGTGCTCACAACATAATTACCTAAGGAGAATGCTTCTTTAAGC--TAATTTATGAGAGGTTAGTGGTAAAGACTTCCATATCTACTACAAGAGCTATGAtttttctgtttctttcttttttttttttttttttttGGATGAAAACAATTTATTACTTTCCCATTCA----CTTGAAGCTGATACAAATGGAGAGAGAACCCCTGGAAGAAAGACTA---TTCTTTTCATAATTTGAATAAAATTATTTTTATCTTCTAAACTCTTATCTCATTTCAAGAAACTTTAACTGTA----TTTACTACTATACACAGCATGTACTTGT--------------CTGGCTTCTGGAAATCTCT--GAACAAAGGTGATCTCTAGCCTTGAGTGA----CAGCTGCCATGGTACCATCAGCTGAGATCAAAAGCAC--------------AAACACAGAGTTTTTCCTGGTTTGGATATTTGCTTATAAGTTTAATGCCTCTTCCACCACCTCTTCATTCCACTATGTCTTTAATTCTC-ACTGGACCCCAGAAATGTCTTCCATTTTCAAGTAGTTACGTTATCATAAAGTTACTTGTAAAAGTTAAGCAACTTAGGCCT-------GACTATATTAGGAACTCCACAGGGGAAAGTCTGAGCCTT--CATTCCACAGGATTTAACTTGTAGGGATGTACCACATAAAATCTCTATCTGTGTTATCCCAG----------------TGTGGCTGTCTAGTCTCAC-------------TTTAGTCTGTAGAGAAAGGGGACAGAT--CCATGCATTTATTGC--ATCCTGTGCATTAACTGAGAT-AAGCTACCTGTGAAATATAAAGCAACATCTTCAACTTAGCTAAAACACAAATCAAATT--TCATTAAAGGGAAATAGAATTA---TTTGCCTCACTC--TCTATGATAT---ACTTATATTTACTAGATTTAATTATTCCCTGGGTATAATGAAAGTAGCTGTCATTGATGTAAGAACCCGTTACCTTTCTACT-----TTTATGTTAATCATTTGTAGCACTTGATACTCTCTAATAT---TCACAACCAAT---AGAAGGAGCTAATTTATATCCCTTTGTTACTTT
s HiC_scaffold_1 142781309 1789 + 233722169 AAGCCTATGTTAGATTCTGTTCAGTGAAGcattgaaactaaaaaacacGTTTGACTTGGCCGTGCCACAGTAT-TCATAA-GATGGTGGGTCCATTGTCAGTTTTTGCCAGAGAAGAGCAAAGACT--GCAGGAGGGGAAGCACTGTGATTTGTTTCTGAAGGTCCCATTGCTTGCCAGCAACCTGGGAGGGTATGTGGGACGCCAAGATGTGAAACCCAGCGTGTTCCAGGTGGGTCTCTGACAGGCACCTAGGCGGCTGCTTCAGAGAAGTGTGCTCAGTGAGCTGTGACACGTGAATTCAAGCTCCAGCCCTCGGCCCCTCTGTTATGCG------TAGCTCCTTTCTCCAAGGTTGATGTATGGAGTTTGACACACCACTGCACAAACATAGCACCACACTCGCTGGAAGACATGAGAAAATGATAGATGAAGTCACCATGGCCCAATTGTTTTGAGATCTTAAATCCCATTTCATAACAGGACAAATAGAAGCTCATTAGAAGTGATTATTGCCATCCTTCTTAT-TGAAACTGGACTTCTGAGAATCTACCAGGAGGGTCCCTGGAGGAGCCAGGAAGATTTGATATCCTGAGCAGAATTGTTCTCT-----------GCTTATGTGACTGACACCCTACAGCGATATTCTAgtgttctattttctgataattccATCAACCCAtcttcaaatttaaaacaaaaatccttaAAACATCTCAAGATTAAAACTTAAAGTA-------CAGAATTCACacatgaaaataatttagaaCGTTCAATTTTATATATTCCCAGTTTTATCTACCAACTACTCTAACATGGAGAATGGCTTTTTGCACTGTATTTTATAACAGGGTGATGATAAAGGTTTCCATATCTGATAGTAGAAATATGA------------------TTTTCtcagtaaaatgttaaaaaagaatattcaatCACGTTTC--TTCAGATTCCTATAGATGATAAAAATCTA-AGAGAAATTCAATGCCAAATTTTATGTTTCTGTCCCGAATtggatgaaaattatttttg------gaaatcTGA-CTCTGATAAAGAATTGTGGGCTCAATCAGTTTAGTACCTCACCTTCCCAGTGGTTCTACCTCAGTTCCACGCTGGATTGTGGGGATCTCTAGGAATGGTACTGATGGAAGAATTCTAGTGATGCCCCGATCCTAAAATACCATCCTTGAGGATCACTGGTACAGTATGGTGAACCTAAACACATGGCCACTcctcttctgctttttcttttgt--------------tttcctcaccTGTT------------TCCTTAATCATCTGCaaaacatggaaaacattttttatttccaaattactGTGGGATCACGATGTAACTCATGAAACTTAAGGATCTTTAGTCCATGTGTAGAACATGTCAGGAGCAC--------AAACACTGGCCATTTCCTTATCTCAGAATCTA----GTTGGGA------ACATTAGGTATGTTTCTATACTGTCTGATATTCTTGGAAAATAGCTGAGATTACCTAGTCTAGCACGAATAATTAGATTCTACCTGAGGTGAAGGATGTAAGATAGACTTAAACTTATGGCCACTTCCTCACATTAGCTATGATAAAACTAC-----ACACATAGAGGGGAGCCT----------TACAACAGAAATTAAATTCCCCACTCAA-GGAGATCCAGTTATGTTTTTGCTCACTAAGTTTATAGTACAAAATTTGGATTTGCTACATTGAATTCTTCTTTGGATATAGTAAAA-----------------AAGTATCC----CCTCTGGACTCAGACCTCACATGAAGCATT-------CTTACTGCCCTGTGTTATTTCTCACAACCAACAAGAGAAGGAACTGACTTAcagctactttttatttt

a score=11721
s chr3           155725236 371 + 160039680 CTTATTAAACAGAAGATTCCTCA-TAGTACTTATTGAATGAGAAAAATCTATGAATATAATCCAAACATATTTTGTAAATATATGAAATCTCATTG------ACATAAAATGACTTTCATATGTGCATGGATATGGAATTTCAAAACACTTAGTGGCAAGTTCTTCACAGGAGAGCAGAAAGT-----------GTTCTTTTGGATTTCAGCATCCTGTCTCATAACAGTTGTAAGGTAGAATCAGCAGGTACACACAGATCATTGATTTCAAGAAAGGATGTCTTCAAAGACAAAACACAAGAGTATGAGCCTGTCCG--GGAAGAAAATTAAGATGACAAAAAAAAA-----------TTTCTATTCC--TAACATAGAAAAATGATCATACACAAAAACTT
s HiC_scaffold_1 142804826 396 + 233722169 cccattaaatcaaatattttttgGTAACATTTCTTAAATGAGTGGA-TAGATGAATATATTTCGAACATATCCTAGAGATGTAAAAAATTACATTACTTTCTACTTAGCATGATTCACACATTTGTGTAGGTGTGATGTTTCAAAATAATTAGTGTAAAGTCcttcaaatgaaagaaataaatagtaTATCTTTGCTCCTCTGGATTTTC---TCTTCAGTCATAACAATTGTGAAGTAGAATCAGCAGGCTCACACAAATCATTAATTTTAAGA---GAAGTCTTTTAAGATGAAGTACAAAAATACAAGcttgtttgaaagaaaaatattgaga-ggcagaaaaaaataaagcatctcTTATTATTACATTACCACAGGAAAATTATTATATTCAAAAGTTT

a score=20398
s chr3           155728911 2425 + 160039680 TTAAAATT---------TAGCTGTGAAATTGCTTTACAATTATAGAAAAGTCTCAGTTATCTTTAGTTGTAGTG-GGACTACAATCTTTTCATAATTTGGGTTAGAGAATTACATTTTACATAGAAATTCATGAAAAGTGGG---TTTATAAGACAGGTGATAGTGTTTTTCATTTTT-----TTC---CAAGGTATGATTTTCTGTACAATACAACTTACTGTTTCTGAATCTCGAGGGTTTTAGTTTTATTGACGAAAGAAGAGAAAATAGGATCTCCTGTGTGGGTAATTTATTTGATTTCCACATGT---ATACTTTTATAAGAAAGGaatataaataaaaattaaaataGCTAAAAATGTACACAAATTTTTCTTGTAACAAAGCAGATA-GGAAGTGTGCCTTTGCAAGGTCATTGGACAGGTGATATT-TAAGCACATACATGACTAGATTTCCT--CATTTTAAAAGCACAGGATGCCTCCTGGGACTTAATACATAGAGGGAATTTAAGATTCATATGAAGATTCAGACCTTGTTTATGTGGAACCAAAAATAATCAGCAGTTCAAGTCCACAGAATAAAGAGTGGAAATAGTACATGGGTAAGAAGAGGGGTTTGAGAGGGCATGTGTA--TTAAACAATAGAAA----TAATTTTGTAAGAACAGATGTGCAGGTGGATAGATGGATAAGGCCAGGGT----AAGATACTATGTTATATCCTGGGAATTTGCTGGTAT--TTGAAGTTATGTGTTCTTACAAGATGGGTTATTGACTGAGGTAATCAGTTATATGTGACTACTGTGAAGAACACCGCATGACCCTGCACAAATAGGTCCAGTGTCTT-------TTGTCACTTT------------TGTGTTACACAATCTTTTT-------TTAAAT-------ATGAAAGTTTAGCATTTATAATAAAATTAGTTGCATTTGAGATAC----AATCTT-----TCTCAAATTTAAAGTGGATTCAAATAAATAGATTCATGAGT---------------TGCCCCAGAAATTAAGTTGAAATGGTTTGAATTATAGCAGGAGGCTAAATATGGCACAGTCAGCATCACTACTTCT--AACTTCAAACAAAGAAGAA-GCCTATTTCAAGAAGTTTG----------CCGAGTGGTAAACAGTGGCCGGTCCCTAAAATGCTCTTAGACAT--CCAGAGTCATCGCCACTATTACATATAGTTGGCAGTGTAAGAGAAATGCAG-----------------TTACTATAGATGAGGAAGGGAGACAGTCAGGCACAGTGCGGTGTGTAGGAAGAGTGTGCATCAGAGTGCTCTT-------------------------GAAAGTTACACTGCAAAGGATGAGCAGCTAATGCAGGTGAATCTAACAAAGG--------------------TCACAGCATTGGACTGTGACATTGTCCATCT----------GCATACTTTTATCACTTGCTTACCATAATGCAAGCAGTACTATAGAATGAACAATATGAATGGTAAAACCAACACAATTGCATTAAAATAGATTATTTTA--------AATGTCTTCAAATGaaaaaaatt-----taaatcat--tattattttaaaatGGATG-GCATAGT--TAAATCCTAGATGTTTTT---AAATTATGTT-------GTAAAATAACAAGTTACAAAATTTTGATTTGTTATACTATTTTATCAGTGAAATTGTTTCTTTTGTCTCTCCCATCTTCCTCTTTGTGCCTTTCCCCATGCCTCCTCGGGTAATTTTGCACTTAAACATGGACTTGAAGAA---AACACAAGCTACCATAAGGTCCATTGCAAACCCCTCAGAGCAATACAGAGCTACAGGAGAACTGCTCAACTGGAGTTCCTCATGGGTTTCAAACATATGGATATATGTGTGAAA------ATGTAAACATCAGCTAGAATTACATGTGTCTGAATCTCTAGCTCTCAGAGTGGCTGTTGCACAAGTTTTGAAAATATCAATTGTGGAAAATAA-AGGGCACATTTAAGATGATATTAAACAAATCAGTTATTATCATCTAAATATAATTTTAAATTCATTTTCT------TCTGAAATTTGCTCAAT--------TACAGTTCTGAAAA---------TGAAGACTGTACCAAA-CACTTTCACATAAAATACCTAATTTTATGAGTTATTAATGTTT--GTAATTGAAACTATTTGAAGTACTAG---CAATTACA-----ATATCCCCAATA---------------------------------------CTACAAATTG------------GTTTTTTGATGTTATAGTTTTTTACTAGGAAGAAAGAAATCAAGATTCAAAGATGTACAATAATTTGCCAAAGTTCAAACGTCTGACAAGCTTCTGTGATGAGTC------------TTGCAC----ATAATACTTT------------TCATATGAT------------AATTTTTTTCTTGCAGTGAGTGGAGATCAGAAGTTACTTACAATTCTTGGCTGATTTTCTCCCAGACAACATCCATCATAAAAATCTGTGGCTTAATCTACAGAGACGCCTGGAAAATTTTATTCTATGGACAAATGCTGCTGTTGTTT-TTATATATCAGTGTAATAGGTACCTGTTGAGTGTGGGGA---AGAAAGAGAAAGAGTGAGGACAAGCTGAAGAGATG----GGGGTGGGGAAAG
s HiC_scaffold_1 142807440 2581 + 233722169 TTAAAATTCATCTAAAATAGCCATAGAAGTGCTTCATAAT-ATATCATAATCTTAGTTCTCTTCGATTGCACTTCAGACCACAATCTTTT-ATAA----GTTTGGAGAACTACCTTATCTATAATGATAATTCAAAAGCAGGAAATTTATAACAGaaatcataatatttttcttttttaaattttcaaacaacATATGATTTTCTATACAATATACCTTGCTGAGTCTGAATCTACTGGGATTTACTGTTgatagaggaaaaaaagagaatagagtttcttgtgtg----aattattttatttcattgtgtggCACGCTTTTATACGaa-gaaacttaaaagaaaattaaactcatTTAAGAAGCACATAAATTGTTTTTGCAACAAAGCAATTAAGGAGGCATGTCTGTTCAAAGT-----GATGGGTAGTATTCTAAGCACAAAAAGAGCTAAATTGCCTTCCATTTGAAAACTGTGTGCTATCTCTTGAGGTTTAATAAGTAAGGGATGTTTGGGATTCAT--GAAAATTGAGGTCTCTCTTATgtagaatcaaaagaaa------attcaagtaCATAGAAGGA-----GCAAGTGGGACagcagaaggaggaaggaagagaatgaACAGGTGTAGGTTAAGGAGTGCAAAGTCACATTTATGTAA-ACTAAGTGATAAGAAGCATTAATACATTATGTGAGCATTCTGATCACATAGGGTTATATCCTGAAAATATGCTAGCAGAGTTGATTTTAAATTCTCCTA--------GCCATGAACACACCCACACGCTCATACATAC---------AGACAACCACGTGAGA--GAATAGATATGTTAATTGGCTTGACATAGTAATCACTTTACTGTGCAGATATGCATCAAAAGATCATATTGTGCAACTTAAATGCATACAATAAAAATCCAGCACTC---------TTTGTTAGTTTTGAGCTACTAAGAATTTTCTATATATGAAAGTTAAAATAAACTCAAATGAATTGATTTATGGATGATTTTTTTCTAGTCTGTGCCCAGAACtaagcagaaatatttttaactaaatcATAGAAGTATAAAAGGTA-AATTACCTTTATTACTTATGTAGATGCAAGCAGTGTAGAAAGCATatcttaaatgatttaaaaacatccaccga-tattacacatgtactatttttaaaagtgct-ttaaaCATTTCTACATCCACAACTGAAATTATATTGAG--GGCA-TATGATAGAAACATAGGacttttctgtttaatattaCTATAtgtgaaataatgaaa-------acaaagtaaacCACATatgaatactttttatttttgcctttttcttctttgcttcttccttCCTCTGTGAAACCTAAGCtgtaaaaaattaagatgtaacACAGATCAACTTCATAAAAAAAATCCATAGAAATAAGGAATCAAAAAGTCATATT-TAACATTTCCCCTCTTAGAAGTACAGCTGGCTGTCCTCATTCACTGACTTT--------Cagtgatcaaaaat--------tgcatttaAACAAAAATACCATT-CAT-AAAATGGACTACTGTATGTACAATAATGTCTTTTATTGCTAAAGACTATCTACATACCATAGTACTGTGACAGTACTATTGTGTATAGtaataaatgtgaaatatttcaggaaaaatatatttatatatggaagATGGGATTTGAGGAAATCAAGAACTGG---ACTAATCC-TAAGGAGAGTAGTT--------------------------------------------------AGAAAAGTTACAATGAAATAGACCCATGATGAATACAACCCAAACAAACACAG------TAGCAATGACATGAAAGGAAGGTAG---------------GATTAATTAAATACATTCACACATCTCATACAC-----CATATGTGAAGAATAAGGCATGGAATAgccataaagaattttaaacatatatatttgtaatt-------tggTGATGGAGAGAATTCAGGAAATATTAGCTGGGAAAAAAGATAGAGCACATTTTGGATGGCATTCAAATAATAAGGTAT-ATTAACATgctatgaattt---tttattttctagaatatcT-ACATCCACACAATGCTAGAAATCCAGGTCAGGACAGTTATCAGTTGAAAACTGTATAAGGGCACT----CACAGAAGAGCAAGTATTGAAAGAGACTGACATCTCCATAGTTCACA-----TGAGGTTCTAGATCCATATACATCTATATATCCCATATATCATATTTCATATTCTCCAAATTGTGTAATTTTCATATTCTCCAAATTGTGTAATTGTGTAATTTTGTGGAactatattttgtaaataaaaa-aaggaatttaaggCTTAAAGATATGAAGCAATTTG--ATATTTCAAACACCTAGAAAGTATCTGTAGTGGAATAAACAAAAATGACTACactgaaataatgttttaattcattataatAATGTGATTTTCTTCCTCATAATTGTTTCTTGGCTCGGAAAAGAGAGCCAGGATTACTTACAGCTGTGGGCTCATTTTCTCTCAAGCATCATCCATCATAAAA--CTGAggttt--ttaaaagagcttttctCAAGATTTTACTTCTGAGATAAATGCT-CTACTGCTTATTATTTACTATTGTATTCAGTACACTTTgagagcaagaaaataaaaagataaagtggGTGGAGTGGATATAGGGCTGAGATGGAGAGGGGAAAG

a score=21281
s chr3           155748863 555 + 160039680 TTTTAAAATTTTACTAT--TATTATTGAAGAAAAGAAAGTTGAAAGATATTAAACCACTTCTTTTTTTTAATTCTTAGAGTTATTCTTCTCATAAACATGATAAACACTTTCTTTGTATCCTAAAGGTCTTTCCATGCAATATTAATCTGTATTCTTTTTATGCAAACTTATTCTGACAGCAACAGTGCATGCATATGATTC------------ACTCCATACTTATTAAAAATAATTT--GGAGAAAAATTCAGGCAGCAGAATTTGTTAGAAAGTAAAAGGACTGTAAGAACTAAGTAAGATGCGTATAGTTACAACTTGATTTAA-GCTTTAAAGTAATTTACCAAAGGAAGCAAACAA-ATGCTTCCTCACTG--ATATGTCTTGAAATTCAAAATACGTGTTGTGTATTAATAGATACATCACATTCCTTCCTG-AAAGACCCATTTTGCTAATGAAAAT-GCACATACTAAGGGATTTTCATTTGAATGAGAACAATAAATTCTGAGAGCTGAAATGTGTTAAATTGATTTTGGGTGGAAAGTATTGATGTTAACCTTCTCTAAacacaca
s HiC_scaffold_1 142827759 560 + 233722169 tttgaaatttttaatatgttaataCTTAATGTAAGTGCATCAAAGAATATAATACTGCTCCTAAAATTTAACTCAGGAAATTATTCTTTTCATAAAtgctg----cactttctttgtatccTAAAGGTCTTTCTATGCAATATTAATACATATTCCTTTTATGTAAACTCATTTTGACAGGAGTGGCGAAAGCATATGATTCATTTCCATTTAGATTCCTTACTTATTAAaactaatttaagaaaaaaaattcagccagcATAATTTATTAGGCAGCACAAAGAC--------ATTTGTGTGATGCATAGAGTTCAAACttgatttaacattttaaaataatttataaaatgaaagaaacaacatactCTTATACTGACACATGTCTTGAAATTCAAAATATGTGCAAGAGATGAATAGATATCATACACTTCTCTCTATAATGATTTACTCTGCAAATGGAGACAGcacattttgagaaattttcatttgAATGAGAATAAAAAATTCTGAACATTAAAATTGCTTAAATTGATTTCGACTGAAGAATGTTCACG-----CTTTTttacaccccca

a score=59327
s chr3           155757193 1968 + 160039680 TACTTCTTTTATATCAAT-----TATTTTCACCATTTTTGTGTGCAGAGCCTTGAAAGTACAAT-TGGGAAAATAAATTTATGGGGCTCAGTGTTTAAACTGATGGCTTAATACATGTGTGCATCATCTTGAGCTACTTACCAAACAAATACTGCTCATTTGAGTGTGA-GCAAGATGGAACATGTGTTTGAAGCTGTTTGGATT---ATCTTGTA--ACTGTCTAATGCAGGTGAAGATTAGGGTAATGAAGACCTCAGCA-CGCACTGTGCATTACATCATCC--AGAAACAGCACTCATCAGCATCCACCGCAAGCAAAACCACCTTCACAAAGGGTTCTGAGCCCTAGTGGGCAGCTCTATAGTTTAACCGATGCAATTTCATCattaattttaatattttaataaGATATTAGAATTTGCATATGTATATTCAGCAGTGACTCTGCAAATCTGTTTATAATGACCTGTTATGC-----CATCATGAAAGCATTTTATATTGTATTTTTCAGG---------GTTTAAATAATACAAAGAATATT------------------------------------------------------TTTAGCCACT------GCTTATCATTGATCCTAACCTAGAAGTGGAAAAGT-GTATTTTA-GATATGAGAACTCCCATATTCTTCTCTG-------TCTTTCCATAACTTTCAGTCACCTTACAAACAGGTGAGGTGGCAGCTTAATTGCAGAATTCTTGTCTCCTCA--CAGCATCATCT-CCTATTAGGATCACTTGGCCATG-CTGTACATGTCAGAGCATAATTT---ATTTCTGAAAAACTGTG----------CATTCTCTTGGAATAGA--AGAAGGACTCTGTCTCTCAGTGCAATCTTTCTGCCCCTCACTTCCCACTGTAACTCAAAAAAAGTACAGATTGGAGGTTTCCAAATGT--------------------TTTCTAGGAAACATGGA---GAAATGGAAAAAAGCGTTAGTGTTGAAACTGA-AATAACAAATAGAGGGGTGAGTTACTGAATTTTCCAGAAAATGACAAACAAATGCCTCATGGTTTCTAC--TCTGCACAGTAGAGGAC-ACAAGCTTTCATGCTTTTACATGGAGTTACAC-----------TCCTG---CTTCTGTGATTGGTACCTC-----CTGTTACTACCCACCTGCAAGCACAGAAATGGTTCTGGTAAAATGAGCAAAG--GCACTCACTGTGATTTATTCTGCTTTTCTTCTTTGGTTGAATTGGCACAAATCATAGGTCTCTATTTTTTTTTTTTT------AAT-------TTCTAGATCTCTAATTATGTGGGTCTGTAATTTTGTCCAGAAGCCTTAAAATGTATTG--AATATTGAAAACCAAGTACAGTACATTTTCAATTTGGCTTCTTCATACATTTTTAAATATCAAAATGATTAGGTCAAGCTTAGGACCCATTCTCTGAGAAACCCCATGATTAAAATGCTCACCCTGTGGCTGGCTGTGAGATAATGAAGCAGTCAACACACCTTTAGAATTTCATGAAGAAGGAAGGAAGAGGTGACCGATCTCTACCTTCTCTGTTGCCTAACTGATGTGTGCATGGAGTTTGGGTAATATAATACATATTCATGCTGACAGCTAATTTTCAGGCTAATGCAATTCAAAACAGAAAAGATAATGAACCCTAAAAAACCCAGAGTTAGTAAATGGAAGTGCTGACAGACTCTTAACTCTAATAGCTATGCTATTGGGCACCACAAAAATAACAAAGCTAATTTTAATGAAGATTTGAAAGTAGATGAGGCATTTATCTTCAGTAATTATGGTGCTTCTGAAGGACCAATATCTAAATGGAATTTAAACCATTTAGATGTCCCAAGGGAAGGAACAATTGTAGAAATATTTTTTTTTCTCAGCATG-TTTCATATAAGTTCAGGAATATGGCAAAAGTATCCAGCGCCATACAAAACTCAGATGAATTCCAAATGTAAGCATACTGTTCTTTTAGAGGTTTA------------------TCGCCAAATCCAGTTAAAATACACATAGATGTTAATGGCTGAATCTGAGTCTATTGCTATAACAAAATGGCTATGACTAGAAACA
s HiC_scaffold_1 142834430 2077 + 233722169 TACTTTTTTAGTA-CAGTGGGTGTATTTTC-TCATCCCTTCATGCAGTGTCTTGAGAGTACAGTGTAGCATTATGTATTTATAGATATTTTCATGCAAACTGATGGCTCAA-AAATGTATATAGTAACTTGAACTACTTAGCATCTTCAAACTGTTCACTTGAAGTTGAAGGAAGATGGAAAATTCATTCCAAattgtttggatttttattttgtgtcactgtcaaatgcagaagat--ttataataatgaagatcTTAAAAGTTCATCGTGAATTAAATATTCCTAATGATAAGCACGAGCTAATAGCCAACATTAG-GAAATAACCATTATGCAAGAAGCAGACTGCTACTGGAAAGGTTAATAATTTAAGTGGCAGAATATGAtcctt--------tattttaagaagataTTAGAATTTGCATGTGGTGTTTCTGCAGTTAT----AAAATCTGACAATTTTCAGCTGATATGTTCGTACGCtacaaaagtgtttttttttttttttttcaaataagctACTGCCTCTATGCCAGAAAAAATATTGTGACTTATTCTGTATACAGTTCTTAGATAGTACTTCTcatacttcttcctttctttggacATTAACTGTGTGTATCTTTAGCTCTAAACTAGAC----AACAGTCATATTTTGTGGCAAAATGCCTGCaatattcttttcctctttcgtTCTCACCTTAGTTTCCAATC-TTTTATAAATAACTCTG---------TCACTGTAACATT----TCTTCTGAGACAATACCTTTTTCCTATTTATGTTACT-GCCTGTGGTTTTGTGAATCAGAA-GTAGTTTTATATTTCTGACAGATCATGTGTGAGACCACATGCTATTTAAATATAGTACAAGGGCCAGCTCTTTCACTTGTACCTTGtcg------atttctttttcaaatgttaaaaaatt------------tttttaaaagtgaattagCAATCATCTCTCCTTTCTGATAAATATTGAATGGCAATTGAAAGA----TTGGTGTTAAAACAGGCGGCAATCAACTGAGCAATGAGT----GAATTTGTGAAAACAGAATGAGAGAACG-----TGAAGCCTACAATCTGGACAGGAGGGAACTGTACGTGACCCTGATTCCAAATGCATTTTCCCCATGTCACAGGTTCTGAAGCTGCTGTAACTGGCACCTCACCTCTTGTCATTGCCCAGTTGCAAGTGAAGAAATGGCtctaataaaatgaacaaaacaatgcTCACTGTGATtggctttgcttttattctttggtaGAAATAGCACAAGTCgcaagtcctttttttttttttttccttcagaatgtAACTCTCCTAGATCTCTAATTATGTTAGACTGCAATTTGGTCCAGAAGCTTTCAGATGCACTGTAGATACTGAAACGCAAATGCGGTACATATTCAGTTTAACTTcttcacacatttttaaatatcaaaacgATTAGGTCAGATTTAGGACCAATTCTCTGAGAAAGTCCATGATTAAAAGGCTCAGTCCTTGCTTTGCCATGAGATAATCAAGCAGTCAA----------GAGTTTTATGAAGACAGAGGAAAGAGGTTGT-GATCTCTGCCTTCTATATCGCCAAACTGATGTGTACACGGAGTTTGGGtaatataatacatattcatGTTGACAGCTAATTTTCAGGCTAATGcaattcaaaacagaaaagataatgaACCCTAAAAAACC-AGAGTTTGTAAATGGAAATGCTGACAGACTCTTAACTCTAATAGCTATGCTATTGGGCaccacaaaaataacaaagctaaTTTTAATGAAGATTTGAAAGTAGATGAGGCATTTATCTTCAGTAATTATGGTGCTTCTGTAGAACTAATATATAAATGGAATTTAAGCTATTTAAATGACCAAAGGGAAATGGCAACTGTAGAAATA--ATTTTTGCTCAATGTGATTTCATGTAGGTGTAGCTGTATTGTAAAAGCTTTGCATTCCATATGAGAATTAGGAACATTCCAATTATAAACATACTATCATATTCTAAGTTTGATTTGAACAATTCTGTTTCCAGAAAGTCTAGATGAAATTTCCTGAAATGATGCTGCCTTAGTAt-------ttgctataacaaaacacttGAGACTAGGAACA

a score=34945
s chr3           155764943 713 + 160039680 GCCCTTCAAAGGCAGGTCTTGCCTCTGTTA---AAGTTTGTTTGT----ATGTGGATAAGTCAAGACCTAAAAAACCAAATGACTTTTTGGTGACAGAAGTATTGTCATTCTGCAGCATGACGATATGCACTCTTAATTATATTTTTAATTTCCTGAATTCTAGA----GTTTTGTACCATATTTCCACAGTTCATTAATTAAAAATGTGCAAGGTTTGGACAAGAGTG-TCTTTTCTTC--------TTTCTTAAGGAGAAAAATGTTCGATTTTTCTTGGCA-CCAGATTCCATTAACCTTTTATCTTGTAACTATTCTTTGATGTGTGTACTA-AAAACAAGCTGAATGCTACTTTTGAGATGAGTTATTCAGTCAAAACGATTCTACTTCCATATTATGTAATAAAACATTAAGCCATT-ATTTGGTATTGCAAATGAGCTGGCTTCATTTCTTTTC-ATATTCTCATTTGTCTTATTATATTTGTATCTGTGCACAGATCTTGCAAGCCAGTAACTGTTTTACACACATGATTTAGAATTTAGGTAAAATAATACATTAAGTTAGAAAAAGGAGAAGGAAAATACTATATCAGGTAGATTAAATAAATATACTTGGTCACTAAAGTCCTGTAACATGCAAAGGAGTTATGTCTAGGAGGGACACCAGCCTTTGAGCTGGGACAAAAGATGAATGAGATACTTGCAAACATAAAAAAAATCCACATTAATTAA
s HiC_scaffold_1 142843957 722 + 233722169 GCTCTTTTGAGGTTGGTTGTGTCTCAGTTCTCCAAGTTTATTTGATTGAATGCAGGTGAGTAgagattttaaagaagaaactacTTTGTGATGACAGATAAATTATCTTTCTGCAGCATGACATTATGTaactttaattacatttttaatttcctgagttTTAGAAACAGTTTTCTGACTTATATCCACAGCTCATTAATTAAAAATGCACAAGAATTGGGCAAGAatgatcttttctttatttttttttttttaaggagagaaATGTTCTATTTT-CTTGGCAGCCAGATTCCATTAACCTTTTATCTTTTAACTGTTCTTCAATGTGTGTGCTATAAAACAAGTTGAATATTCCTTCTGAAATGAATTATTCAGTCAAAACACTTCTGTTAccatattatataataaaacagCAAGCTATTGATTTGGCATTGCAAATgaactacttttatttcttttttatattgtaatttattttattctattagtATCTATGCATGGATCTTGCAAGCCA-------TTTTATTCACATGAGCTAAAACTCAGTTGAAATA---CATTAactcagaaaattgaaaagaaatatacTGTATCAGATAGATT---TAAATACATGTGGTCATTAGATTTCCATAACATACAAATGAAGTATTTCTAGGAGCCACTCCAGGCTTCCAACTGTGAACAGAGATGAACGAGATACCTATAAACAT-AAAAAGCCCTATGGTAATTAA

a score=23851
s chr3           155781519 819 + 160039680 TTCGGCCAGTTAACAAAAAATGAAGAACTTGGAAACTGAGTCCAGCACTAAGCTAGGATTTATTAGTTATCTT----TAGGGGGAAAAAGGAGAGAAAGAGTGGAGTTG------ATGAGG-TCCACTAGATTGGAAACAACAAACTATTCAGCACATGGTAAATGTTAGAGCAACTTAATTTCAAGTTCTAGGCCGGAAGTCGCATCTTCACTTCTGAGATATTGCAAGTGAATTTTAACACTATAGAGATTGGTTGATATACTCA-------------GAATAGAGGCATATGGAAAGAACAAC-AAACAAGCTTCAGAACATGGGTCTTTGA-----AGGTTAAGCTTTCCTCAGTACACACCAAATGTCAAGGTTGAGGCTACCTGCAACTCAAAGTATAATGGTTTCCCCTTTGGTAGGGTATTCGTACCTCAACAAAGCAGAGAATCAGACTGAGTTGCAAAGTTTTTAGCCCTTGAATTAAACAAACTAAACATACTCTAATGCACTGTGTGACTTTAAAGAGTTTTAGCCTGAGGTTTCCTTCTTTATTTCAAAGACAAATGCAGACCATAAGCTAACATCAATTTTGATTGTAAAATTGTTAGAAAATTGTTAAATTATTTTCATTCTATTCATATCTCAGCATGATACAAAGAAAAACAGTTGAGCTTTTGAAAGGAAAAGACCCTGGTGTGAAGCCCAAACTTGCTAATTAGCATGACTAGTATTAATTTTTAGTGTAGCCATGAGCAATGTTCTTAAATTCGTGATTTTACTTTCTATGACATCGAATTAATATTATTTTGCAAATATGTGAGACAACTATAGCACAATAAAAAGTT
s HiC_scaffold_1 142859276 823 + 233722169 tttaacaatttggcaaccaataaaaattttaagaagcagATCTAGCCCTAAGCTCAAATTTATTAATTCACTTATTTTAGGGGAAAGAA-------ATCAGTGTACCTAGACAACATGAAAACCCAATAGAAAAGTGGCATTGTAC-ATtgagt------tatat-ttaaaataatttgttttagagACATATTCCT--ATTAGCAATTTCA-TTCTGTGAAAATTTCCATGAATTTTAGCCACATACAAATTGACTGCTTCATTCATGCATGCTTACGGAAGTGCATGTTTATGGAAGGGACTGTGAAATAAGCCTCAAAGCATACATCTCAGATAAGAAGCTTA--CTCTGCTTACTA-AGGGGGAACATAAAGGTCAAGGT--CTGAAAACTCAGAATGCAATAGTTTCATCTC-AGCGTAGTATTATTATGTGACTG--TTAGAGAAGCAAATTGGGttacaaagttatttttctttgaaatcttctAGAAAAAATTACCATGGTGTAATGTATAAGCTTCAAGACTTTTAGCTGTATGGTTGCTCCTTTATTTCAATGACAAATAGAGACTAGATGCTGTAGTGAAATTAGATTGTAAAAATGTtagaatattattaaattttttccatTCAATTCATATCTCAGCatgatacaaaagaaaagatttgagctttgaaaagagaaaaaccctAGTGTGAAGCTCAAACTTGCtaattattgttactattattaatatttaGTGTGGCCTTAAGCAAGGTTCTTaacttcttgatatcattttctgtgACACTGAGTTaatattattttgcaaatatGAGAGAAAATTATAGTCCCATAAAAACTT

a score=31937
s chr3           155793633 1019 + 160039680 TTCTCTCCTGTGGCTGAAGTCATCACTGGGCAGATTTCAGAACATGTGCTGTTGAGCTGCACATTTAAAGATTCATGAAGTTTCAGCTCAAAATGTGCTTGCCTGGC--CTATTACTGAGGTCGGAATC--TTAATCGTTTTTAAAGTCTTCATTGCAAGTTGTCCTCTGACAGTTTTGTTAACTTTACTTTTGGAGTTGAGATGAGAAGCAACAAGGTTTTGGGTAAAAAGGTAGGTTTGAAGGAAAAAAAAAACCTAAATTTGTTTTATTATGCATATTAGCATTTAATA-TTTTCAATTCTAAAAAA---CATGCAAGAGACATCTTATTAAATAAACATGCTGCTGTCCTCAGA------TTTTTATATTCATGTTCTTTTCTACTTGCTTGTGC--TTTTGACATAGCAGAGTTGTGATGTCCCCTTGAGTTAACAACTACTCTTTGAAAAAGTGT-ATCTTCATTATCTTCAAAG-GACACAATATTATCCGTTATCCCAAGAACTCAAAA------CATATTATGTTCTGTTCCTGAGATAGATTTCATATGCAACTATTGCATGATATCTCAGAGTGCTAGCATTCAGAGGACTATGCATTATAATGCTTAAA-GGTCTATTAATAAATATCTGCTTGCTTTCTTGTACCATTTTGAAC-ATTTTAGTACATTCAAGTTATACTTTGTGGGGCAGGAAAATATGATGCTAAGAGGTCAGAAAGGACATTAATCAGTTGCATTCCAGTTCTTTTACAGACAGATAGCAG-GATCCTCTGAGGTCACCATATACTTTTAGATATTTAATTGATGAGTATATAAATCATCT-TAAACATATTCATAAAATATTTAATGGTACTTTAGATATTAAGATATTG--ACAAACTCAACTCTTCCCAAACAATCCATATCTGGATTTGTTCAAATCTTTATTACTCAGG-TCTAAAACATCTATATATTCTACTCTG--CTTAATAATTTCAAAATAGGATCTACATGAAA-TATTACTTTAAAATATAACTGAAAAACATTCAGAAAATTTT
s HiC_scaffold_1 142876856 1041 + 233722169 TTCCTTTTTGTGGCAAGAGTCATTTTTGGGAAGGTTTCAGAACATTTGCTATTGAATAGTACATTTAAGAATTTATGAGGTTCCAGCTCAGAATGCACTGGTCAGGCTATTATTCCAAAGTTCAAAAACATTTAAGATTTTATACAGTCTTCACTAGACACTGACATCTGACAGctatgtttattttacttttggagCGAGGCTGGAGTGCGGAGAGGGTATTGGTGTAAGGACCAGCGGACTGgatgaaaataaattgaatactTTGTATCTATCTAactgatatttaacatttttccatTCTGAAAAAGTCAAGGTAGAAGGCATCTTATTAAATATACATGCT-CTGTCCcaagactttttttcttaaattcatgtACTGCtctgtttgtttctgttattttgacATAGGAAAGCTGTATCGTTCCCTCAACTTGACAATTGCACTTTAATGGAGTGTCGCCTTCATTATATTCCAAGAGATAGAATATTG-CCTTTACGCAGGGAACTCAACACTTTATCATGTTAAGTTCTGTTTTGCAGATAGATTTCATAAGCAAATTTTACATGATATCACAGAATGCTAGTATTCAGGAGGCGGTGTGTAATATCGCTGAAAGGGCCGATTACTACATTTC-ACTTGCTTTATCAtaccattttaaataatttttatatacttaaGCTGTACTCTGCAGGGGAGTTTATCATAGCACTAAGAATATATAAAGGCCATTAAAGGGACACACACCagttcttttagctttgggcatCAGAGTTCCTcagatgttttcttct--ttttaggcATACTACTACTAAATATTTTAATCGCATCCCAACATGTTCTTAAAATATTCACCAACACTTTAAGTATTAAGACACTGTAACATCTGTGATTGTTTC--AACAATCCATGTATGAATTTGCTC-AATCTTTATTACCCAGGATCAAAAATTTCTATATATTCTCTTTTGGACATAGTTATAT-AGAAT---ATTCACTtgagattattatttttgtatatggCTGAAAGATGGTCACAACATTCT

a score=32492
s chr3           155804481 1116 + 160039680 CTCTGTTTCAAACCTGCAATGAGAGAATCTGAGCT--GACAAGTCTACTTGGTCTCCTTGGTTCTGCTGCCTTCAG---TTTTTCTGATTTTAAAAATCTAA----CCCTCCCCAGCTTCCAGGAACATACAT-CTGTTTAGCAGAAAAGATGCAGCCCAACTTCAGAATTGCTAATACAGGCCAATTACATCTTCAAGCTAAATTTGTTGCAATTTTGCCTTTTGACGGTGTAAATTATTCAACAGGCCACAGCCTTAAAACGCCTGAGGAAACATGAGCTTGGGGCCAAATTGTACGGATTAAAACTTTTTTTTTTGTCTTTTCAATTAGATACAGTTTTAAAAATTGTGAGGTGTTCATGAGCAGGCTGCATGCATTTATAATTGGAGTTGTGCTATATATTATATTGACTGTGGGCAACCACATTTCTTTTTGAATGTATTTATACATCAGGAGCAAATAAATGTCAATAATAAGAAACAAAG---GCTGATAGGTAGAAATGAATCCTGAAACCCATGGTTCTTAGTTAGAGAGATTTTTCCTGTTTATAACATGGGTTGCACAAACACAAATTATATATGTAACTGCTTATTAGAACCAGGAATTAACATCTTGCAGCAAACTCTGTGATAATGTCTCTACTCCTTTCAATCTTCTTTGTAAATGAGAGAGGGTGCAGCACACAGAG-AGAAGCCTCTGGGAGCATATTGGAGCAGCAGGGGCCCTCATGCTCATCCTCAGCTTCTGTAGCAGGCTGTGCTAATAATATCATAAATTATAAGAAATGGAAAATTATTTGCATCTCACAATAAAAATTTAACCGGAAGGGAACAAGCTGCTCTTAGCTACCCAGAACAGGAAG-CCTATTCATTATGTGAGGATATTTATCAAACTAAGTCTCAGTTTAAAACAAATCTGACAGCTTAGAAACTTAGAATTGAGATAAT--TTTTTTGATATTACTTTAAAAAGGTAAATGACTTAGAAACCTT---TAATATGTGCTACAAATCAGAGACATGTTATTGCCTCATCTGACGAGGATTCCAGACCAAATATAAAAATATAGTTCAGTTACCACACATCT-----TTAAATT--AAAATTAAAATAGAATGTGATAAAGGATAATGACA
s HiC_scaffold_1 142882775 1099 + 233722169 CTCTTTTCTAATCCTATAATGAAAGCGACCTGGATAGGATCAATCTGCGCCTTGCTCCTGCTTCTTCTGTCTTCaacattttttctgattttatag--cCAAGCGCCTCTGCTCAGCTTGTTGGCGCTTCcattctattttgaaaatgagGTGCTATCCAACTGTAGCATTTCTAAAAAAGGCTGATTATATCTT-ACGCtaaatttgttgtaattttgtcttttgacaaTATAAATTATTCAGTAGGTCACAGCCTTCTGAAACCGGAAGAAATACACAGTTATATGTTTTCTGCTGGCCTTGTAACTTTCCATTCT-----TTCAATTAGATACAGTTCTCAAAATCAGAAAGTGATT-TCAACAGGCTGCTTACAC--ATAATTGGACTTGGACTATGCATCGTATTGATTATAGGGTACAGCAATtcttattgaatttatttatgtataagtAGGAAATAAATGCcaataataataaacaaagaaAGCTGACAGGCAGAATTGAGCCTTAAAAGC-ATAATTTTTACTCAGAGAG-CTTGGGCTGTCTATAATTGGAGTTTAGCAAACAAACATT-----TTTAGC-ATCTATTATGGTTGAGTATTAGCATCATCTAGCAAAGACAG----AAAATTCTTACCTCCTATAGCTGCAGCTAT----------GGATACAATATACACTGCGGAAGCTTCTCGGCACAGATTGGAGCAGCAGGAGTGCTTTTTCTCATTGTCATTTTATGTAACAGGATATGGTAATAATATCATAAATTATAAGAACTggaaaattatttgcattttgcaATAAAAATGTAATCCAAAGAAGTCAAGCTGTTCTTTAGTACACAGTGTAGGGTGATCTATTTATTatcaaaggattttttaaaaaataaagctcagTTTTAA--AAGTTTGGTGGTTTAAAATCGTGAAATGGAGATAATAGTCTATTGA--------CCGAAAGTAAAATGATTTAGAAAATTTGTCTAATATGAGGTTCAAATGCAGGGAGTGTTTTTGGCACTTCGATCCAAGAATAAAAGTcaaatgtaaaaatacatttaaattactATGCACCTTACCCTGAAATTTCTGAATTATGATAAAA-GTAACAAGGGGAAATGATA

a score=63547
s chr3           155811038 2765 + 160039680 CTTCCTCACATTTGTGGCTGT-AGGAGCTTCATCCTTGGACATCTTCAGAGATTAAATGCA------AAAGACGTGGTACTCACTAATTCCTAGGATGCACATAATCAAGAATCTATAGTA-ATAAATGAATCATGAATCATAAGAAATATGCA--GCCAT---------TAAAATGGTTCTAATGACCTAGAATTAACATTAACAAAACATATTTAGAACTCAGAAGTTACAAGGTCATGGTAAGAATGCAGATTTTTCTCTATTTTT------------GAATGAGTT-CAGAGCTCTTAGAGAACAGGATGAATAAATAATAGTAGAAGAG--AGTGGGCATTTATTACTCAGGATATCATCTCA-------------CTCATATGGCTTCTGTGTCTCCTCCATTAACTATTAACTATCTTCCAGTATGGCATGCAATAATAGTCTAATGAAATAAAAATTATCTAAAAAACAATCCAGGGATAGAGGTTGTTTCAAGGCTTAGAAAAAAAATTCTTTCTGATTTAAACTTTGAATTTCATTTGGATTGACATTTCTTGCAGTATAAAAAGGA----------AATAAAATTAAAGAAAAAATGGACTTACATACTCAGAAAAGCAATGTTCCAATCTATGTAAAAGTAATGCTGAATATAAT-----CTTTTTGTGTTCAAAGTGGATTGGGCTGAGGAACAAAAATCATGTGAGCTAACATCACAAGTTCCAACATAGCTTTGAGATCAAAACTCT--AATTATATA--------TATACCCAAATTAGATGAAGAAGTTCAATAGACTTTTTATATTTAACATTTTTTTGCT-TCTTTCTGTAGATAAAAGATATTGATATCCAATACTGAAAACCGTACCATTAGTGGAAAACCAGCTTTGGCACAGTGGAGTCTCTATT-----GGAAGGTA--GTCTTCAAACAGATGTCAGATCTCTGCTGGCCCTGAGAGAACTTCAAAGCTGAATAAACTCGAAAAGGGCAGAATGTGGCATCAGCAAA-CGATTCCTATGTGAGGCATACCACACACTCACTTTCAGAGCAAAGGCTG----TCAG-CTTGGCTGAACAGAGCCTTGAAGGGCTTCATTATTGCTTTTGATTTTGCTGATTGCTTATTAACTGACTCTCTTCAGCCACCTGGCTGTTCTAAATGAAAAGATTCCACTCATATTCTAAATGATTATTGGCATGGTGATTGAAAGAGGAAATCCTTCCAAAAATACATTTAGTCTGCCCTTGACCATGCAAAAAGTAACCCACAGAGA-GAGAGCTTGCTGAATATGGCCCATTCCACTTGATGCATCCTCAAATAACTGCAAATTGAAAGATTGCAAACTAATACAAGGACTAGCAGGACTCTCTAATGAAGCATTTCTCATACTTAACTTCCTAAGGAGCCCAGGAAGGAAGACTAC-ACTGTAGTCACTGGCATCTGCATCTTCTCTGTGATGACACTTTTGTCCTTTCCACTCTGCAAGAATACACAAATTACCAAACAGTTTGTCCTGTAACACACCTAAACTTAAACTAGCATGTGCAGACTTAGAGGTTTTAGAATACTGCAGTGTTT-------CTCATAGACTAGGCATGTTCTCTTCTCG--TTTGAATAGTTTTTAGACAAAAAGGAAAGAAACCAAGAACTGGGCTTGATGAATGGTAG-CCAAAGTGATTGTGTCCTCTGTTTTGTGAAAGTGTCTTTCATATGTGTTCTTGGCTTGCAAGGAAACATCTTAGAGCTTGTGAAAGATGTTTCATGCAACAAAGAGCATATTTGTAGAATTATGCAGAGTACTGGCCAATCCATATGTTAGTAATCTTCTAGGGACCTGATTCCCAATAATATGGTGCATGTGTAATGCCAGAGAAAAACAAGAACATAAGGAGAGAAGGCTCAT--TCATAATGTAGCA----TCCTTGTGTGCTAGGCTCCACA-----TACCCATGGTTAATGTTCTCAATGTCTTTCCAGGGAAGCA------------------AGAGCCTCATTTCTTTGTTACTCCT---CAGGATTCACTTATCCTTAGCAACTACTAGACTTGAATAGTCTCTTTATAACACAATCACTCTGATGAATGAATAGCATTATCCCCAAAAGAGAAGGCCATGACAAGTATGGGGGCACAGTCTTCCAGAA--CACACTTCAGCTCTGCCATGATGACAGTTGTCCTACTACTGAACTTTCTACCAGCTTATGAACCTGAGAAGTGACTCACCAAATCACCT-TTTCCTATAAACTTTACC---AGGATTGAGTTGCTTTTGTTCTGCAG-AGAAAAATAGCTTTAAAAAAACTGAAGGAAAAGTTCAGAAATGGACAAATA-AATTTCAGAATCTTGTTTCTGTGTT--TTTGTGTTGTGGGGGTTTGCAATTTTTAACAAG-TATCAGGTCCAACACCTAAAGTCTGGTGTGAAATAAAATATCCTTACAAGAAAAAAAT-TACAGTGCTTTTAACCATATATCTTTCTGAAAACATGATATTAAAAATACAGACAGCATTATAAGAGTACAGTGATTTTACAGATGTGGGAATAAAAGGCTAT-GGAGAA-GTCAAACTGCTGATGTCGGTGTATCATCATAGT-AAGTATGATAAATCATTCCT-CTAGGGCATGAGAATCTATGGTCTGTGCATTTCAGTGAATGGCTA--GACAGATTCTAGCAATTGGCATTCGGTGA---TATTCAGTGTTCAAAGGTGGATACAATTAAGTTAAGAGCAGCAATTTTGTGTCATCTGCCTTTTGCTGTGAGAAATTTAGTGGTTGTTCTTGAG-----TGATTGAACAAGTAGGAAGGAGATGGTGTTGGCATCCTGT--GGTTTAAATGCATCCTAAAGGTTC
s HiC_scaffold_1 142888842 2718 + 233722169 CTTCTTCTCGTTTTTGGCTTTTAAGACACCGATTCTTTGACATCATCCAAGGCTAGATGCATTCATAAAAGAAGAGTCTGTCAC-----------ATGCGT-----------TCTGTGGCAGATGAGCGGTTCCTGGAATGCAAAGATGCTGCACTGCGATGCTAAGTGATAAAACGTTCTTAATAAACTGTagctagaaataa-aaaagaaatttggaattcTGAAATTATAAGGTCAGAATGATAGCACTGATGGC-CTGTATGTTGAGCGACAGGTGGGAATGAGACATAGGGACC---AAAAATTGGGGGTAGAGGTAA-AGCAGCAAAGGCAACAGACTTGTCTTATTCATAgttttatttgataaataaacGGACCTGATAGGTCGGTTATGGTT--TTCATTGAATATTAACTATTATGCAGTCTAGGAAACAGTCATAACCCAGTAAAATTAAAGTTATCTAAAGTACAATC-AGGAAAGGAGATTTTTTCAAGGCTTTTGAATA---TCCtttctgatttaaattttgaaCTTTATTCTGATTGACACA-CATGTAGCATACAAAAGAgaataacattaagaaaatgaaaagaaatatgaacTAAGGTAACCATAAAAGTAGTGTTTCAATCCATGTAAAAGTAAGACAGAATATAATAAAGTTCTTTTGAGACCAA-GTAGTTTTGA-TGAGGAAGAAAAATCTTACCAATTAACATC-CAAAGTCCTTCATAGGTTTCAGATCAAGTCTCTCTAATTACATAATGTGTTATTTTTCCAAATTAGATGAATACATTCAGTATACTTTT-GTAGTTActatttttctactctttttctgtagATAAAAGGTATTGACAAGTATTATTGAAAACTGTGGTATCAGTGGAAAAAC--CAAAGGCAACATTGTATGTCTTTTACCAGGAAAGGTAATGCCTTCAAACAGATGTTAGATCTCC-CTAGC--TGTGAGAACTTCAAAGCTGAGTAAACTCACAAAGAGAAGAATGTGGTATCAGCAAAGTCATTCAACTGCTAGGCCTCCTGTATATTTACTCACAAAATACAGATTACGTATCAGGCCTTACAGCACAAAACCTTGAAGGGCTTCATTATTGCTTTTGATTTTGCTGATTGCTTATTAACTGGCTCTCTTCAGCCACCTGGTTGTTCTAAATGAAAAGAATCCACTTGTATTCTAAATGATTACTGGCACAGTGATTGAAAGAGAGAATCGTTCCAAGAACATATTTAGGATGCCCTTGACCATGTGAGAAGCAACCAATAAAGAGGAGAGCGGGTTGAATAGAGCCCATTACATTTGATACATCTCCAAATAACTGCAAATTGAAAGATTGCAAACTAATACAATGACCACAAGGGCACACTAATGAAGCGTTTCTCATA-TTAACTTCTCAGTGAGAACAAATATGGGGAGCATGGTTATAGTCATTTGGCTCTG-GTACCCTCTGTAAT-CCAGGTTTGT-ATTTCTACTCTGACATGAGGCATGGTTTATTAA-----------------GCACCAAAAATCAAGACTGTTTTTAC-----TAGGG---TTAACATACT-TAATATTTATGCCCATTCCTAAACTAAAAATGCATCCTTTTAAACTTCACATAGTTTTCAATCAAGAAACCTAGAGACAATGAATTAGATATTATGAATAAGAGTCCAGGGTGATT-----------------------TATTGTATATCCCTACATAGC-------------------------------------------------AGCAATTTTGTGTCCTTA----------------------ATGTTGATA---------GGACTTGCTTCCC-CTAACATTTTTCATGCAGACtgacacaggaaaggaaacagcCAGTAAGGATGGAGTTATGGTCTTTATGTAACACAGTTAACTGAATGGTAAATCTCAAACAGGTTGTTTTTAATGACTAGTCTCCTTCCCCATCCAGGGAAACAGGTACTTTATTTATAAGTAGaaccttgattctttttcccttttttctagg--TCTATGGTCCTTGGGAAAATTTAGAAGTTAATAGTTTCATTATAGAAAG------TTGTACAATGAATCATCACAGTTCCAATAG-GTCAGCTATGACTAG-ATGCCATCACATTATCTAAAAATGCAGACTTTAATCTTGCCAGACCAGCAGCCTGGCCAACACAGCACCTTCTGCCAACAGAAGAATGCGTCGAGTCATTGCCCAAATGGCCTCTTTTATATAGCTTTTACATCGAGGCTTTAGTCA-TCCTGTTTTGCAGtaagaaaatagcttt---aaaactagaaaaaaagtttaaaagaggCCAGAAACAATTATATCattcttattctgtttttctctgtcttgtaGGGACTTGCAATTCTTACCAAATTCTCAGAACTGGAATTTAGATTCTAgtgcaaaataaa--atctttgtgaGAGGAAAATGGAAGGTATGTTTTACCAAATATC-TTCAGAAGGCATAGTGTTTAAAATACAGATAGCATTCTAAAAGGAATGCGATTTTATAGATCTTGAAATAAAAGACTCTCAGAGAATGTCAAGCTGCAGGTCTCCAAATGTCACTAAGGTAAAACATAATGGATTAATCCTACCCAGGTACTGGAAACAGTAGTCT---TATTTTAGAAAGTGCACAATATTAAAGTCTGACAGTGGGC-TCCCATAAGCTTTTTCAGGGTTCCAAGTTGGACACAGTTCAGCTAAGAGCAACTTTTTTGCATCATTTACCTTTAAACACAAGAAATTTGACATCTGTTCTTCAGTTAAATGACTGTACAAGT--GACGGAGA----GTTGGCTTGTGGTACGGCGTGAGTGTGTTCCAAACGTTC

a score=38323
s chr3           155819603 4222 + 160039680 [encoded data, 4493 characters]
s HiC_scaffold_1 142897618 3949 + 233722169 [encoded data, 4493 characters]

a score=9674
s chr3           155864239 837 + 160039680 ACCACAACAGTTAATCTCATCTCCTCTAACATTTGGCAAAACTCATTTGTTCACTGGAGAGAAAACCCT------------------------GTGTGATT---GGACCTTCAAAAAAATGAAAGAAG----ACTGAAGTTCCA-TGCTAAATGTACAAGGTTAATTGGAAAAATATGCTGCTGTGTCAGAGATGAGGGGTTGTTAAATGGTGTTTCAGAAAAGGAT--TCCTCTCTTTCCTCTAAGAAAGCACTACCTTCATCTCAGACTCAATTAGAAAACAAGTTGTCCTCCTTCATGACTCCAGAACCCTGGATACCTTTACTTAAGCAATTACTGTGCAACTAATGCACTGTGGGTACTTCATTTATTGGACTAGATGGACAAAAATATGAGA---------------TCACATACAGCAAGCGGCTCGCTGATTGATCTGCTCCTTTGCAAAAAGAAAG-AGCCTTGAGTGGAAACCTACTGGGCACAGGGCCTGGTGCTTTACACTGTGCTTCATGGGGGT-----TACCAGGGTAGAGCAACAAAGTGAATGAGTACA--------ATAGACTGTGGGAGTTTAGAATGATTTGCATTATCATGGGTATGTGCTATTAGAGAGCGAATCCCAGCT-------CAAAGGG-ATGCAGTATAGGAGTATGCAAGAT--GTAGAATTTGTCAGCATCAAAAAATGTACAGGAATGGAATATTCCCTTTATCAGGAGCTTGTATTA------------TAATTTTAAATGAAGACACAAACATCAACACATGTAAATACACAAACACTTTTACACATGTAAGAGCATCCC-AATATGATGAAATAGATGGTTTTAAGAGATTTCTTATGTACACATACACATA-------ATTGTATGCTCACAATTTTATTGATTTTTCTTCATA
s HiC_scaffold_1 142939214 882 + 233722169 ACTGTAACAGGTTCTCACA-CTTCTCTAAAATTTAGCAAAA--------TTGACTAGAAAGAAAACCATCGCACTAATCAATGATGGTTTCTGATATAATTCTGAGAcgtcttaaaaattaaaagaagttatAGTGAAATTTTGCTGCTAACCACAAGAGACTGA--GACAAATTGCGCAGCTGTACTGAAGGTGGGAGGATGTTAAATAGTTTTACAAAGGTGAATCATGCTGTTTTGACTCCGTGAAAGGGCTTCTTTCATCT--GATTCAGTTAGGAAATGACTCTTCCCCTTCCATCACTTTAAGACGTCGATCTCCTTTACTTAAACAATTATTGTGCAAC-----CACCGTGATTGTAGTTTTAGgaggaacaaatggaaaaaaaaaaaaaaaaaaaacctgggcttTAAGGTAAAACTAG-AGTTCATTGATTGGG-------TTAGCACAGAGAAGGAAGCCTTTCCAGGGAATTAA--GGGCAGGGAGCC-AGTGTTTTGCAGTGTACTGAATGGAAGTATCGAcatcaaaagaaaatgacaaaaccctTAAATAAAAGGTGGTTATAGAGGAAAGCAG--AGGACTGCTTTGGTACATTGTAGGCACTTAATATTAGAGAGTAGCTTAGAGTTGTAAATACATAGGACATGCATGTTCAAAACATACAAGACTGACAcaatttgagagaaaaataaaacaggtttGAGCATAACAAT-TTTTGGCAAAGAGCTTTCAGTAATAGGAGCAAATTAATTTTGAAGATTACTTTAAATATAGACAT---TAAAT------AGATTTTCACATGTGTAAGAGTTTCCAGGAGATTTTTAAATCAATGGTCTTTGTATATC-----TGTGCACAAGCATTCCTTGTTATATTGTGTGCTCCC--TTTAATTggtgtatttttata

a score=20141
s chr3           155865689  951 + 160039680 AATACCCAAGTGTTCCTGATAAAGAAACACAAGTGACTGTG---AAATCAGCAGATCCGTGTTCTTATGAGCAC-AAAGAACCCTTACATAAGGTTG----------GATTTCACAGCACTTGTGCTGAC----------TTTTCTCC--GGCAATGTAGTTTCAGCACAGATCACTCTACAGGC-CTCAAGAATCTGATTTGCTTTCTACATTCTGAGAT----------GTTCATAAAGTATAG----AGCGGGTTCTG----ATGGGA--TACTGGTCTCTGGCAGTGGAACAAAGTCAGGCAATGTTAAGTAACTTCTAGGTATCCCATCCTGCATGCAAGGACAGATAGCTAATGACACTAAATCTCCCTTAGTTACTACAGTAGTTGAAGATATTAAGTTTTTATCTTAAATTTTACATGTTATGAAATTTATGGAGGGGGTCTGGGTCTCTGACTAACATACGCAGCCC--------------AACAGATATTTAAATAACT--AAGATATCTAAGATACATTGGAATT-TTTCATA----------CTTAAAAAAAACAAAGGAGTGTATTATAATTTCTAATTCATTTGGAATTTAATAGTTTAAAGTTAACATTCAAAAAGAAGTTCAGTATATTGTGTAAACAGAAACATGTC---AGATTCTGGTTTGTAGAAGATGGAAAATAAAATTTGATTAAATTAACAATGAAATAATAACATTTAACTTCATCTTAGTAAATCAGTGTTCCATTTTGTTGTTGATTGCATAAAAAAAGATTCACACAGTAGGATATAATTTTGAAAGTGTTGAAATTTGCATTCATTAGTGCTCCAGAGGCTAATCAAGGCATTTCCAATTAGGATCCACTCCAGCTGTACTCTCAGTCACTGTGAGAAAGGTTTAAATGGAGAAGGAGAAAATTTACCACTGCACCAAGTTATCCTTGGTCTAT----------ATGTCTATATGCTGACACTTTATACTCTATCTT---GAAGCTTGATTAATGGATGATGTATCTATGTA
s HiC_scaffold_1 142941976 1003 + 233722169 AATacttaaatgtttttgaaaagcaAGACTGAGTTACTATGTGTAGGTTAGTGAATGAAAGTTCTGGTTAGCACTGAAGAGCTCCTTTATTGATTTGCTCTTGCCAAGATTTTGTTCATCATGtgttaatgcaaaataaattttttacaaGGTACTATAGTTTTGTTAGAAAACACTCAACTTATACTcaaaaatctgatttattttctagACTCCTAACTAAATGCACAAGTTTATAAATTTCAGTAGGAGCTGGGCATGTCACCTgggactttcttttttctt-tggtgaCATGAAGT--GGAATTTGAAAGTAAAATCCATTATTGTAATATTTCGTGTTCtgaaatatatgttttaaaag---------ctttatttctgtaatggttaaacattttc-ttttgtatatcACATTAT---TACTATGGACTTTATAGAGAATGCTTGTATTTAAAGCTAATCTCTGTGGTACCAAATACTGTGTGTGATAGATGTTCAAATAAACGAAAGAAGTTTG---CACAGTTGAATTGTTTTCTATTGATTTTCCCTTAAAGtagattaa--aatgtatttta-tttctgct--aTATATATTTCAGTATCTTAGAGTTATCATTCCAAAAGAATTTCACTTTGTtgtgataaaagaaaagaatttgaaaaatttggttttaaaaac---gaaaataaaatctgattaaattaacaatgaaataataacttttaacataattttagtAAATCAGTACTCCGTTTTGTTGTTGATTGCATAAAAAA-GATTCACACAGTAGGATATAATTTTGAAAGTGTTGAAATTTGCATTCATTAGAGTTGCAGTGGCTAATCAAGAAATTTCCAATTAAAA-CCACTTCAGCT------TCATCAACTAGGAGAACTGTCTACACAGCTAATGATAAAATTTA-GGCTGCACCAAA--ATTCTTGATCTGTTTTGATCTGAATATTTTCCTGTTACCATTTTGCTATCCACCTTTTGAAGGTAGGATCAgtgacttttatatttttata

a score=19947
s chr3           155869550 757 + 160039680 CAAATATATAGCCTAAGATGAAAATGATTGAAATTATTAGCTGTCAATTAATGACAGCTTTGAAGTTCAGGATGGTTAGTTTTACTGAGTCTCCAAATTAAGCT---------GAAAATTAATAATGTCAATTATTTCCAT----------AATATTTTTCTTTGATC------TTTTC------TTTTCCTAGAAACTATGAAAAGGA-AATAAGTTAATATAAAAGCTTTTGA-----------------------------CAGAATGAGAGAAATGTCCTAATGAATTAATTCTGTTATTCTTGAAA-----GATG---CTGGAAGTA-ACACAGTATATACCTTTTCCATTGTTATAATAAGA---ACTGTCTGAAAAAAAATATCAAACAGCCATCTCAGATTATAAATAAGGCCTCTGCCTGGGCATCATAGCACAAATAGATAGCTCACAAAATCTCCTCTGGCTTTATTAGATATATTTTCACTCAAAATGAAGTCTCTATG----------CTGTAATTCACATTCCAGACAGCTGCACTTGGCCTTCTTTACAAAATAAACCATCAGAAAATGACAATAACAAAATCAGAAATGGGGAATATATCACC--ACACAAAAATGAGTCAGTTACT-CTGTCTTTGTGTGAAAAACCCTATGAAAATGATAACCATGCTTACTACCACATCTCAAAACAGCC-ACAGAAAGCAATTGTTTGAGAAAATTGTTCTGTTGAGAATTCAGGAAGTAAAAATTGATGATCAAGACACTGCTTTAACTATGTCTTTAATATACCTTCACTTAAACAACCAAGCACTGATTTTAGGATAAACA
s HiC_scaffold_1 142968397 823 + 233722169 CAAATATATGGGTTAAGATGCAATTAACTACTTTTGTTTGCTG----------AGAAGATTATAGTTTAACATGtttatatacatt------ttagatcAGGTTAGTAGAAAAGACAGTTAATACTGCCATTTATTCTCATTCTCATTTCGggtattctttttttcccattgcattttcatttgatttttctggcaaatagaaacagaagaataagGAATTCTAGGAACATTTGATCCTCCCTAAGTGAACAGAAATGGTgagacagaatgagaaaaaagtctCAGTAAATTAATTCTGATATT-TTGAAATCATTGATGTTCCTCCAAGTGTAAACAATGTGCACCTTTGCC-CTGTTAGAAAAAGAGGTATCATCTGAAAAAAA-TATGGAATA-CCATCCAGAATTATAAATATGGCAATTGCATGGATATCAGCATACAGATGGAAAGCTAAGGAACGCTTATTCAACTTTATTAGATACATTTTTTACTAAAATGAAGTCTCTATGACCCCCTATACTGTAATTCATATTAGAGACAGCTGCACTTTGCCTGTTTTACAAAACACACTATCAGACGACAGAGATAACAAAATAAGGGATGGTGAACACATCATCTGCCACAGAACAGAGTCAATTACTCCTGGCTTTTTGTGTGAAAACATATGAAAATGATAACATCTTTCACCGTCCCATTCCAAGCCAGCTGAGCAAAAACAATTGTGAGAAAAACCTATTTCGTTTAAGCAACAGCAAATAAAATTTGCCT-TCAAGACACTGCTATAACATAATATGAAAGGCATTTTATCTGGAAGAATTATACATAAATTTTGGAATGAATA

a score=13263
s chr3           155878345 533 + 160039680 aaaaacaaaaaaacaaaaaacccaaaaaacaaaaaaacaaaaacaaacaaacaaacaaacaaacaaac--------------------aaagaaaaTTTGAATGCAGACTCA------------TATCTCTCT--TCCAG-TTTGAAGCCCATCAGGCAAAAATCTATGAGTAGC------------TTTTGTAATGTTTGATGATATTTGCTTTGAAGGTTCAGCTTCCTAATTTGAATGTTCAAAGCTGCTAAAACAGAAGGCATGTCTTAAAGGGCTCGCTGGAGGGTGCCCGAGAATTGGTAACAGAAGGAGTCCAATTTTGTTCTTGTATTTTGT------ATTTTGGCATAGGATACTGTTTCTTTCATTGGCCCTTTGGAAGCCTGTGTTTTTAATATCCAATATCACTTTTTTTAAGTGGCACATTGGGGCAAAACATGAAACAGACCTTCTGTTCTCTAATAATGAAAATCTGTTACTTGGAAAAGATAGATGTTGCTAGAATAACTCAGAAGAATTACTGAATATTCAGGTAGCTAAGCAGCCATAAGCAAATAATCTTGCCTTCCATCTCTACCT
s HiC_scaffold_1 142975057 555 + 233722169 aaatgaaaaatgatgaaacacttaaaagaaaaaaaaa-aaaaacaactgagtaCGCTATAAAAGAAGTCACTatcttatcaaaatttaaaaaaaaatt---atgcagcTTAAAAAGCTAAGGAATGTCTGTCTAGTCCAGattttctgtctgtctgcttcAGATCTA-GAGCAACACATCAGAGGGATCTTTTACAGTTAAGCAGttattgctttgaagttttgACTTC--------AACATACAAAGCTGCTAAAATGCAAGGCATGTTTCAAAGAACTAGTGTAAGGGTGACTGAGAACTGGTAGCTCAAAGTGCTCAGTTTTAaacttggattttcttttttaatcttgaCACAGCACATTGCTTATTCCTTTGGTC--TTGTAaggttgtatttttaattgtcaGTA-------TTTTAGGAGACATATTAGAGCAAAACATGAAACAGAACTTCTATTCTCTAATGAAGCAAACCCAGC-CATCAAAGAGATTGAAGTTTCCAGAATAACTCAAGAGAATGACCAAAATATCATCTAGCCCTGCA--------CAGATAATGTTGGTTCACATCTCCTCCT

a score=7734
s chr3           155887980 543 + 160039680 TTCAACTCATAA--TGAGTCTATGTCCAGTATCAATATGATGAACAAGTCTACCAAAATATATGTGACATGTCAATC-----AAGTACAATA-----CTGATCAATGCA------ACCCCATTTCAGGAATCCCTGAGTGCATTTGTTACCCC----CAAGCAGT-CATTATTTTGTAAGGAAACCCACGTTGCCTCAAAATTCACCTATTCACTATTTTTTTTTTTGAGGAGTAGATTTTA-AACTGTGGAATGCATTGAATCTTTGTAGGTTTCATTTTACTTCTTGGTTCTATTGCTGTAATTCTAGGACTGTTTCAGAG----ATTTCAGT-AGTGCCACACT-AAGATTCTTCCCCTC---TTTCCTTTGGAAATACTGAGGCCTT-TGAACATT-ATACAAGAGCTGTG--TGTCTCTCATGTCATGAACTCATGCATTCTGTTATATTGCCAACACCATAGCTGCAGTGCTAATATGCCCTGTTGACATTTGATTTCTATAATTTCTTTACAAAATCTAATTAGA--CCTTGGATATAATGTATCatttttaaattattaattattttgaattca
s HiC_scaffold_1 142996612 544 + 233722169 TTCAGCTTAAAAAATGAGTCTGCATTATGTG-CTTCATAATGAACAGACGTATTAGA-CATGTGTGGCATGCCGTTCGGAATATATAGAGTAGCTCTCGCATTTGTGCTTGCTTTACTCTATCTCAAGAGTTTCAGAGTGAATTAGCAATTCCAGAACAagcagtgtgttttttt---------------tttttttaatatttaact-----------tcCATATAAAGAAGCATTTTTTCCAACTGTGAAATGTATTGAATTTTGGCAGCTTTAATTTCACTTCTTTGTGCTATAGTTATTATGCTAG----GTTTTGGGGGCAAATTTCAGTGAGTATCATACTCAAAATCGTTTCTTTCATATTGACTTTGAAACTATCGAGGTATTCTAGGCACTAACACAAAAGCTATGCTTGCCTGTTGGATATTAGGTCTGTGCAGTTTATTTCTTAATTAACATCCTCACTAAGCTTTTAATAATCCTTGTAAGAGATTGCTTTCTACAGTTCCCGT---AGATATACCTAGGACCCCTTGCtatattatgaaattt---aaatattaattattatgaattca

a score=22528
s chr3           155896950 805 + 160039680 TACACACAGCTAATTAG-TTATGCAACCATTTCTCTTAGAGTATTTAGCATGGAATTTTAAAATCTCACTATCTTTCAGTTTATGCCTGACCCCCATGTCAAGAATG-GTTTAGT--GGCTATCTTAGAAAGCTATGATTTGAAAGGTTAAAGCCCTTCC-ACATCACTGC-ACTGGAGCATGGCTGGTAAAAGGTAATAGAAATCTGCTTAAGTTTCAATTGCTAGAGTTTAATTGCACGAGCAAATCCATTTCTTGAAGTAGGAGTCTCAAATGCCAGCAAGATTCACACACACTTGATGGAAACATTTAGTCCCCAAGATGTCCCTTGGTTATACTTTAAAAGTTAAG--ATTATTATGTAGCACAATTTAGTGTAGTGAAGAAT---AAAAGATGAGAATACTTTAGCAGGATATTGTCAGGAATATGATGGGCACACATTCTTC--TAGGAAACAAGAAGTTTAT-AAATTATACTTCTTTCACAACAAATA-AGAGTTTCATTCTTGCTCCTGTAGGTTGCCCTTCAGGTAAGCTTATTTCTCCTTATCTTTTACCTCAGAGCAATCTAAGAAATTTCCAAACAAAAAGTAAATAATGTTTAAAATATCCAAGGAATCCTGAAACTAATCACAAGAGAAAGTTACTAAAAATAAGAGAACACAAGGTTAAGAGTTCAGCATGATGTTCCATAGCCCATTAGGGCAGACATTGTGTTCCCTGGTAATGGCTAAGGACTGTGGCTTT-TATTTGCTAAAATGTGCCTGTTCCTGGGATGACATTGCTCATGAAACGGTAGTTTTCTTCATTGAAATA
s HiC_scaffold_1 143004460 783 + 233722169 TGCATATGGCTTATTAGGTTCTGCAACAATCTCCCTCAGTATATTTAGTTT-------------CCCATTATC-----GTGCATACCAGGCTCCGGCATCATGGTTGCTTTTAATAGGGATATGGCAGGAAGCCATAGTTTTAAAGGTTAAGGCTCTTCCTACATTACCCCCACTGGAGTTTGGCTGGTAAGAGGCAATCGGAATCTGCTTAACTCTCAACTGCTTAGGTTTAATTGTATGAGCAAATCCATTTCTTGAAGTATGACTCTTGAGCG-CAGCAAGATTCACCTACATGTGATGGAAATATTTAGT-CCCAGAATATCCCACGTTAATACTTTAAGAGTGAAGACATATTTACGTAGCTTAATTTGGTATGGTGAGGAATAGCAAATGAAGAGAATATTTTAACAAGGTAATATTGGGAATGGAATGGGC-CATGTTCTTCAGCTGATGAGGAGAGGCTTATAAAATTACATTTCCAACCAAACACACACAGTGTCTCACTCCTGCTGTTATCTGCTTCCCTTCAGCTTagcttttttctcctcctttctcatACCACAGTGCTCTGAgaaatttctaaggaaaaa-taagtaatatttacTA-AGCTGGACAGCCTTGAGATCCATGAGAAatcataattaattaaaataaagagaaCCATCTTTCTGACATTTAAGTAACACTCTA------------GCAG---TGATGGCTGCTCATAAAGATTTAGAAAATCAGTTTTATGTTTGTTAAAATTTCATAATGCCTATAACTTCATTGTCCATATAATAAAGGTTTTCCTTAGAGGAATA

a score=7242
s chr3           155900732 318 + 160039680 TTAGTGGTTCCTCTTGCAACTCCTAATTTACATATAGGCTGTATGGTGGGTATGGGAACACCATAAGCTTAAGTT-------TTTATGTAGCT-TTGAGATTTGGCTGTGTTTAATATGTAAAAATGGGTATATAAAACAAATAACAA-GGGCA----------ATGACAGGAATTCGTGAGAATACATCTTCTTGCTTAATAGCTTCATGGTAAGAAACTGAATTATTGATCTGTCAAATATG---GTCTTTTCTGTATATTTACAAGAATATGAAGCACTTGTAAGAAAGGGACACTGGGGCATAGTCACAGGGCAAGTAGTAAGAGACGTTCTTCCT
s HiC_scaffold_1 143010159 327 + 233722169 TCACTAGTTTGTTTCCAAAATGCTGATTGAATCACAGTCTATGATGTGGAT-------TATCATAAGTTTAGCTTGCAGCCTTCTTTTTAGCTGTTATAAAATGAGTATATTTAATATACAATGGTGAAtctataaaatagataaaaatagacAGTGATGATTCATGACAGGAATTAATGAGAATACTTCTTCCAAATCATTAGCTTCATAGGAAGCACCAGAAATATTGATCTGACAAATGtgaatatttttccta-----ttataagactg-aagaaattcacacaaAACAGATAATAGAATATAGCCCTGGGACAAGTAGTATGTAATGTTCATACT

a score=37214
s chr3           155918910 1041 + 160039680 caaaggttttgttctct--tagtggtatctgggcatctcatcttgggttgactg-------ctttcctgcctgccattgtcaccctggatcc-----tgacagagtggctgctgcactgtccgttgctccccagtgtgacagaaggaagagagactcagagtcttgaactgtgctcctcaaaagaatacatctct------tctacatct-gtcagtcaaagcaagtcccaatgccacttcagagttcaacaaggcCTTCTTCTAGCACAGGCAGAGACACTCT-GGGACAGGAATCTGAACATCTGGTATGGAGTAATGGAATCTATCTCACTAATGAACTGCATTTTATCCGTGTCAGAGTTT-AGCATGACCCTTGATTCCTCTTTTAAAAATATGTGTTTAGAAACAGCTGAGAACTTTTCTATTTAGGAAAAAAAATCCATTAGGGTACCAATAAATTGATCTCCACAAAAAAGGTCAATGatatttgagtggcaatttagagctttcaaagcactttcaaataaacatctcatttatttttcgtaagtactccatgCAAACTTGAATTCACAAACTTTTACTCTGAATTAACTATTT------TAAAGCCATACTGTAATTAGTTAGAAGTGAAAAATATATTTGCCTATGTACACAATATATGAATGCA---TTTTTATTTTCTCAGTCTGTCA-----AGATATAGGTCAAAGTCTCCTGAGCTGATTTTCCACAATCCTTTT--TCCTTTGATTTTCCCTTATATTTCCACCATAAACTTTGACTTTCACCCCTCACCCGTGTCCACCTCTGCTCTTCTTA-TAACCCATAGCTCTTAGCAAGGTCTGAAGATGACCATTCCTGCCAC--TCTTAATTGGCTTTATGCAGGTCATTGCAGTCCAAGAATAATCCTGCTTTCTTAAATAATTCTGAATCTCATTTCCCAAAGCCATTGTCTTCATATACTCTATATGGGAAAATAAGATGT-TTCTAATTA-GGACCATTAAGctctaggaaaccctagagttcacaaaactttctttgaagaaggtagagaaag--cagagggaggga
s HiC_scaffold_1 143024904 1047 + 233722169 CAAAGATTTATCTCTCTGTTAAAAACATAT-----TTCCTTCTTGAGTTAACTGACTAGGGCTTTGCTTCATGTCACAATTACTCTGGTACCCAGGCTAATAGAGGAGCTGCTGCATGGTACCTCACCACTCTCCGTGACAGGGGGCAAGAGACCTGCCAGCTCTCAGCT-TCCTCCCCAGGGTAACACATGTGTCTTCTATCTACATTTCACCAGTCAAAGCCGGTCTTAAGGCCACTTCAGAGTTCAACAGGGCAGCATCCTCTCACATGAAGAGACACAAAAGGGACAAAAATGGCAAT-TCTGGTA--GAGTAATAAAATCTACCTTACTAATGAATTGTGTTTCATCTATGTCAGATTTTCATCATGACCCTTGATTCCTCTTTCAAAAATATGTGTTTAGAAACATCCAAGCACTTTtctatttagggaaaaaaatccattaaGAAACCAATAAATTGATCTCTGCAAAAA-GGTCAACAATATTTGAGTGGCAATTTAAAGCTTTCAAAGCACTTTCAAATAAAcatctcatttattctttct--------catgAAAATGTGAGCTGATAAACTTTCA-TCTTATTTACCTGTTTGTTAGATTAACTCAT--TGGAACTactctgaaat--aaaatatatgtacccTCATA------ATATACAGGCAAGGGTTTTATTTCCTTAACCTGCTACACTTGGAT-TAGATCAGAGTAATTTGGGCTAATTGTTAAAAATTCACTAAATCATCTGAATTTCccttgtttctc----------tttgtcttcatATCATCTTCCATACCCACATATTCTCTTTTCAATAATCCATCTTTATTTTCAAACCCTACAAAGGGCTATTCCTGCTACATTCTTAATTTTCCTTTAGCAGATCATTACTATCTGATAACTATGCTTCTTTCTTAAATAATTCTGAATTTCATTTCCCGAAGCCATTGTCTTCATATACTTTGCATAGGAAATTTGGATGTGTTATAATTAGGGATTGTTAACCTTGAAGAAACCCTAGAGTGCATGGAAATCTTTTTCAAGAAGACAAAACAGGCTCAGAGGGATAGA

a score=29931
s chr3           155942344 3248 + 160039680 ATTATGCTAAAGTTCTACT-ACTCTGATTCTCAGACATACAGGGTCTTTGAAATTTGCAT-----TTAAGCAGTATGACATAATTGTATCATGAGGAGC-TATTCAGTTTTGT--ACTATGCTTGATTTTCTATTGCTCTTAAGAGTCAAAATCCTCACGGGGAAATCTGTTATACACAGTGGCTTGATAGAAG------------AACATCG-GACAGCTATAACACCTTGAAAATTAATAAATTCTATA----TAACTTGAGTTTGT--TTGTTCCAAGGCACTGG-----TACTATGGTGCAGTATATTTTAGAGAGGAGAAGACTGGTCCTTCCCAGGTAATCTTCAATGTCTACATGAGGCATCAGGAATCAT---------------------TTTAACTGCAGGTGTCATCTAGACAGCTATGGGCAAGAAATGGTTCATAAGACTGCGGACTGAGAGGCAAGG--AGAAAGATTTCCATATAATTAAAAATGGCAAG-TAGAGCCAGGAACAGTGGTGAGGGGACAGTTCTGAGCTACCAGTGACTCCTA----GAGCTCCTTGCTGTAAGTAAGCACATTATTCATAGAGGTTTCATTGTAAGTTAAAAATAATATCATGTAAGA--------------------ATGttttaat---------taaat-----------------------tttttataaGGAACATCTGTGGTTATA-CA---CTGAGATGGGTTAAAGGAGAGAGTCTGTGTTGCATTTTGGTTTCTGACTTTTATCCTTCTGTAATAAAATTTATTTATGTAGTAACTTTTCCAGA----GTTTGGGGAATAGGAGGATTGTGCCCTAGATAGAAATTCACACCCTGCTCCTGGCAGGGAATCTAAAGCATAGACGGCTCCTAATAAATATGTTAAGCTGACCTAAATTTAAAACTCTGTTATAGTTTCAGCATACAAGAACGCTTTTAACTTTACATGCCTTGCTTCAAATAACCTGTAGGCATTGCATGATAAAAGCACAGACATGTTTTAGAAAGATGAACATTTATATATTGAG---GTGGTAAGGTCACTGGAGTCTTGGATAAATTAAAAATTGACCTCTGAAACTTTTATTAAAAAGGAGTCTTACATTT----CAGGATCCCTTTGAGGGTTTGTTGGACTCAGATTATGGGATCCAAT----AAAACACGTAATT--TTGCAAAGTAATTTAGAAGCCAGTATGAGACTCTGTTATATTCAGTATGACCATGTCACATTTGTTTCTATAAGGATGCTAAATAGAGAGGTGACAACTCTCTCTTAC---------CAAAGCCAAAAAGATAGTACTTTTATTGATTTATTTATTACCAAAGGATGACATCTTTCATAAATGCAAAGAAAGATAATAGATGCTTATTACAGCGAAGTTTGCTTAGATTAAACTATG-----------TTCAACATGTATTTTCTGTGACCC--AAATATCCAGGCAGGCTGAGGCCAAAGGATGGGTGGAGAGGCACTGTGTCAGGAGTTTGTATCTAAGATTTTCAAAGGAGCCAGTGCAATCCAACTGAGCCAGGCTTTGACCCCTTATGTCTGATAGTTCCAACTTTTTGTTTGTTTTTGTTTTTGTTttttgtttttcgagacagggttcctaggtatagtcctggctgtcctggaacgcactctgtagaccaggctggccttgaactcagaaattcacctgcctctgcctcccaagtgctgggattaaaggcatgtgccaccatgcccagctTTTAATTGCCCACTGGAATTCAGAATGCCAGGGCCTTGTTATGGTTGCCAAAAACATAGGAAGTTCAAGGGATAAGATCA-CAAATATTCAATCTCAGCTTTCCTCCACTTTAAAATGCAAATCTTCTTTATAGTTCCAATGGTAAATTCAAATGACATACATAA-GTGGGTAGGGCAGAAAATGCAGCTGTGTGCACCTGCCCTTACTTCACATCTGTAGTCAACACCTTTTCACCCTGTGAGTATGGTTGAATTGTTATCT----ACTTAGTGCATTCTATCTAAAGTAAATGTTGGCATGTGAGTGAAAGAGGCCCACGGGGATTATAGACTTTTCTTGAGAGAAGCA----GACGATTGGGGAAGGGCTGTGAAGCATGAATCATCTTGT-----CTTTGAACCAACCAACCAAATATG-TAAATTATCTTTGTTAAAAGGGAAAATAGCACCTACTACAAATATTCCTACTTAATGCTTTAGCACAGTAAATGCCCTATTCTTATCTGAAAGTCCAAGCTAATGATTAAA-GTAATTTTG--AAACAGT---GAGAGTCTCAATATTTGACATGGTAAGTAAATCTTTTACTGCTTAGAGCCTTTTCTCTCTCTCTCATGCCATGGACCATTTGAGTT-TAAAGCAAGCCATGTTAGATAGAGAAGGAAGTTTAAGGATTGCTAGGAATGCTGACTTATTGTCTGGTAATCTCACAGAGAAACATGCCAGGCATTTAAAAACACTGAGAAATCTGCTTATATTTTCATTATATAATATAGTTTTAAAATGCTTCACATGGTGATGAATAAATATACTTTATTTTTAGCTAAAAATAAATTTAAAGAGATATTTTCTGTCTGCCTTTTTACTATTCTCAAAATAACAGTGATA-AGTAAAATTCTAGTTCACATTATTGTAGAGTAGAAAGAAACAAAAACATTGAAGCCTTAAAAATCTTACAAAAAGACAAAGACTCCAAACCCACAATGAATTAAAGTGATCTGTATTGATATAATAGCAAAAGTTT---ATCTAGGGAAAGGAGTATAAGTGAGAAGCTTATTTTCAAAAGT---AAATTAGCTGAAAAGAAAATCACCTTAAATACAAAGCTTACACTGTCCCCTAACTTATGAAAGTTTCATCAGCAAATGTGTTAAAATGGGTCAGAAAGTAGCTTCAAGGACAGGTTCAAATTAAGCTGA-GTTTTTATCATG-ATTCATTTTCACTAATTACTTTAGTAATTGAAGATGTTATCCAAGGCATATTGTAAATCAGTTAATTGTTTATTCCATTTGTATTTTTTTTATCAAA-TGTGAATTTCAATTGCTGTTATGAATATTA-CCCGATAAAGACACAGGTGTAGT-----------ATTAGTCAAGAGCAAAATCAATATCTTCACCAAATAAACCGGTTGTGACACTGAACACATCCAAGTGGGGAA-AGCA-----ATGGTAGAGGTTAGAGTGCACTAAACACATATGGATTTTCATGATCTTGCCAGAATAAAAGCATGGAACATGTAACACACATGGAGCACATAACAGTCACTGTTATAGTTGGCTTTTCTGCATTCATACCTGTTTTCAGAGTAATCCTAAATAACAGTTGTCTCTTTGTTCTATCT-TCTACTTCTCT
s HiC_scaffold_1 143046529 2904 + 233722169 ATTCTACCAAAATTTTCCTGATTTTCACTGTCACAAATATTACTCTTCAGTCATATGCTTCATTCTTAAAAACCATATCACAATTGTATTATGAAAGGAATATTGGGTTCCGTTGACTATACTCAACTTTTTCTGCACATTAAGAGTCAAAAGCTTTCCA-------TTGTCATGCTCACTGACATCATACAGATAGTTCAATATAAGCCTCGCGAAAATTCTCACACCAGAGAATTCAACAAGTACTGCAGTTGTGGTGGGATTTTGTGTTTGTCCTAGAAAGGTGGGTGTTTAATATATAACAGCAGATCACTGAGGGTA-----TTGTTTC------------CTTCAAAGTTTGAAGCAGtaaatagaaaacagaatgtaaattgtctttgtttgtttatttttagatatatttcaGAGACTAGTAACAACAAAATTGTTCATAAGACTGTTGGCTAAGGGCCAAGTTCAAAATAATGTCCAGATTattaaaaaggacaaaagagaTACAAAAGGATTGGGAAGAGGCCAATAACTTTTTATGAATAATTATTAATGTGTGTTCCTTGGC-----TAAGTGGATAATTTAAAGAGgtttcaca-------caaaataaaacaatgtaaaacacaGAGAAACAGCTCAGCAAGGTTTTGTTCATGTTCAATAAATATGGAGTCCTttcatagattttctttttagaattgaCCTCTGCACTTAAAACAGATCTCATGTTGTCTTAAAAACAGATTCCTTCGTGTACTtatgttgttgtctttt-tctctctgtgatattAATAATTTACACAG-ACATCTACCAGACTAAGTTTGGAGAGTATTAGGTTTGTGTCCTAGATAGCTATTTATACCCTGCTCCTGGCAGGAAATCTGAAAGATAAAAGCCACCTAATAAATATGTTAAACCAACCCAAATTTATAACTTTGTTACATTTGCAGCATGACATGATGGttttttatttatacactttACTTCAAATATTCTGTAGGTACAGTTGGCTGAAAACAC--ACATGTTTTAGAAAGAT----ATTTGCATGAAAAGTGTGTGGTAC-ATTAGAAGAGTCTTAGTTAAACCTAAACT--AC-----AGACTTTTCCTAGAAAA-----TTAAACTTGTCCTGTGGTAACTTTCAAGGCTTGATGGAATCAGACCACTATTTCCAGTTTGAGGAAGGGGGAGATAACTGCAATATAATGTATATCCACCCATGAAAAGTCATAGAACTCAAAGTAAATA-GGAACAAGCTTTTCCACAAGGTTGCAGAGCAAATATATACAGTCTCCATCTTGTTTATATTTACATGGCTAA----ATATTGCATTTGGTGAT-------------ACAGAGCACAATTCGAGCAA----GAAGGAAATTCACAGGAAACAGTGATCATAACTTATATTTAGATTAACCAATAGTCCAAAACACTTTACCATGTGTAGGCCATGAACCTACATTATAAAGTCCTTTTCAGGCCATAAGATACTTCTAGCGCCAC-GGGTCAAGAGTTTGGGTATCAGATTTTCAGAGCCAGCACTGCAGCaca----------------------------------------------------ttgtgattttgcctttggTGTCAACAGAAAGGA---ACAGGAACAATCC----------ACAGAGAACCCTGT-GACCTGGTACTCCTTGAGGTTAGA--------------------------------------------------------------------GCCCAGTAGAGGT---------------------------CCAGAAAT---GAGAGTTCAACGGAAAAGGAAACCAAAGATCCACTtattatttgctttcattttataatatatttttttctca-------aaaattaaactgaaataaaagatctaatgTGGTTAAGATGGGGCACATACCTGTGGGCGCCTCCTCT------ACATCTCTATCCA--------TGGACCTGTTTTTGTACTTCAACTGTTTTCCTGCAGAATAGTGTTATATATCTGAAGAAATTCTC----TGATAATG-AAGAGGTCCACACAGA----AGAC-TTCATAGAGAAAAGCATGATGAGAATAGAACCAAGGAAATACAGGGTGCAACACTTTTTCATCCCTTTGCGTTGATAA---AATTGTGCTAAAGTGTCTC---------------CAGTACCTGCTACTAGAGTATCTATTT-ATGTTATGAATCAGTGAACATCC--CTTTGACATAAAGACCCGAATTAATGGTTAAAGGTCATTTTGGTAAACAGTAACAAAATTATCAGCATTTCTGGtgacaattgttttctttaatattcataGTGTTT------TGCTTTATGAAAAGTATTGTTTAAACTATAAAGTAAATCATATTACCTAAA------------------------------------------------------------------------------------------cttttaacatttacatt-----------tttcagaag-----accagaaaacgaTTGCACATCTTTTAT----------------ATTTAAGGGGG---------------------------TCTAAACAACAGAGGAACAGTAAATTT---GTACAATCAATTG---------------CTAAAAGATGCAAGC--------TCTTTCAGAAAA--------------------------TAAAGTAATTTGTATTG--AGAATTTTAAGAACTTCTCATCTAGGGAAACAAATATAATAGGgaacataattttgaaaaactaGAATTTAACAGGGAAAATATTCACCTTAAACACAAAGTCTAAAATTTCT-----CTTATGAATATTTTAAGATGTAATATGGTAAAATGGGTCAGACAGAAGCTTCAAGGACAAGTTCAAATTAAGCTGATTTTTTTATCTTGAATTCAGCTTTGCTAATCATTTTAATAATTGAATGTGTTATCTAAAGCAAGTTGTAAATCAGCTAATTATTTACTCTATTTGTG---TTTCCATCAAATTATGAAGTTCAATTGCTATAATAAATATTATCTTTAGGAAGATGCAGGTGTAGTGTCTATGCAAAATTAACCAGGAACAAAATCAGTATGAGCATGGAATAAAGCAGGTGTG-CAGACAAAGTGGTTAAATGGGGAATAACATGTAGATTATAGGGGTTTGTAT--------CCCATTTGTGTTTGCACAGTGTTACCAACATAATAGTATAGAAAATCGAGAACTCGTTA-------------CACTGTTG------------CTAC-TTCATGACTA----CAGAGAGATAGTAGATTTGGTCTTTCTCTTTGTTCTATCTCTTTGCTTCTCT

a score=7816
s chr3           155948171 484 + 160039680 aAGGTTAAATTGTTAATTGATTTTTATTATTAGAAAATTGTGCTTGCTCTAGGGTACTGGCTATACATCACCCTCAAGAAGCATTTTTATTG---AGCATGATTTAATTGTTCTCTTATTAATGGTAACAAGTGTTCTAA----ATTTACAGAAACTGTAAGTCATTCTTCATCTATATTCTATTTTAATCATTTACTGGTTGATTTGTTGACTTTTTTGGAGACTTGGTTTAAGTTTATTTCAACAATAGCTACATCTTGTCCTGTTCTCTAGTCTGACTGC--TAATTTGCAAATGTGTCAATTTAGACAGGGAATGGACTGGTGGGTGGGGTGACTTTCAATTGGA--CACCAAATGGAATTAGCCCAAAGACAACTAAGCTAAAAATCTCAGAAAAG--TCAGGATA----ACAGGAGTCACAGATGTTTTCAGAGTTTGA-ACCAGGAA--GTAACCAA--AGTTTTAGATATAAATTGAACAGAATAAATACTTTCAAAT
s HiC_scaffold_1 143051583 475 + 233722169 AAGGTTAAATTGTTAATTGCTTTTTACTATTAGAAAATGGCAGTTGCTTTGGGATAATCTCTGTAAACTAAAACCAGGTTTTATATTCATTGGGAAGTATGATTTAGTTGTTTCCCTGTTAATGCTAAGCAGTGTTCTCATCATAACTGGAGATCCTCAAAATAAATCT---TGTGTGCCCTATATT-----------------TTTGT--GTCTCTAGGGAAAC-------ACACACATTTCACCAATAGCCATATCACATGCGAAGCATGGAGCTCAAAGAAGTAATTATCCATCTTGTT-ATTTGCACTGGGGATCAGGTGGTGAAGTAGGCAATATTAGATTATAAGAGCAACGTGGCTTGAGTCCAAAGACCACAAGGCT-CAAATCTTGAAAAAGTCTCAAGATATGGGTCAGAAAAAGTAAGAGTTTTCAAAATCTGCTATCAGAAAAGGTAACCAACTGGTATCAGAGTAAAGTTGACCTCAACAAATACTTTCAGAT

a score=35696
s chr3           155975426 922 + 160039680 TCTTTTTTTGGCATTATTTATTTTGTTCACATGCAGAGGAAAACATAATGATGGCCTGAAATCATGG-CAGTCTTCCTGATTGTCTGCTCACAGGAACCACATACAACTTTAATTGTAT-CTTCAACTCTACTTAGTATTCTCTGAAGTCAGATCACAT-TGGATTAAGTCCCATTACATTCTCAGTGAAAATAAATCCAATTCTTATTTTATTTGTGCTCAAACATTT-TAGATCATATTACTAGATGATAATATGTTTTTGTCTGGATAAAAGTATATAATCATTAACATTTATGGCTCTATTTGGTAAAGAGGCTGGTGGCTTACACTATCATTTCATGAAACATAATCCAATTGCTGGCACATTAGGATTTTTAGTGTAAGGTTTATAATGTAAATTTCAATTCT--ATTCTGTCA-TAACTAACAAATACTGAATTATTTC-TCCCTTAGAAATGCACCATTGGAACCCATTTAAAGTGCTTAATGATGTATTAATAAACCATGATTTTACAGCAGGGCTTCTCCACTCCTCTGCCTGGCGCCAGCTCTGATGCTGCCAATCAAATTAGAATGTGATATTTTCTAAGTTAATAAAGGTTAATTGGACATATAGGAAGGAAATTGAACACCAGAAATATCTTCTCTCAGACTATTCTTTCCTGAACCAAAGATATTATGTTTCTGTTCTCCA-----ACAGCCAAAGCATCCTTGTTCCTTCTTTAAACACAAAGTGCAATCAGCTCTCACTTTCAGAAATTT---CCTACACACCTGGTATGTTTTTAAATTATTATTGACATAGTTTTTCCAATTGATTACTTATTGAACGAAA--------TAAGACTTTCTAGGGCTTTTTGGAAGCTTCCCTGTGAGGTATTTG----TCTTTAAGCCAGTTTGCTCA--ACTACACAGATCTGACTCTTTGTAATGTGGGAA
s HiC_scaffold_1 143071450 924 + 233722169 TTTTTCCTAGAAATCGTTTAGGATGAAAGTATATGGAGAAAAATACAGTGGTGCTTTGAAATCATGGATATTTTTACAGATTGCTCACTTTATG---CAAAGTAAAACTGAAATTGCACACTGGTACTATACATGATATCAATTTACTTCAAATCCTAAATGGACTAAGCCCCATCCCGTGCATATTGCAAATAAatctaattttt---tcatttgtactcATGCTTTTCTGGATCATATTACTGAATGATCATATGTTTTTGTCTGGATAAAAGTATATAATCATTAACATTTATGTTTCTCCTTGGTAAGGTGGCAGACGACATACACTGTCATTTTGTGATGTGTAATTCAATTGCTGGCACATTAGGATTTT-AATGCAAGGTTTCTAATGTAAATTTCAATTCTGCACTCTGTCAGTAACTAACAAATGCTGAATTATTTCCTTCCTTAGACATACACCATTGGAATCCATTTAAAGTGCTTAATGATGTATTAATAAACCATGATTTTCCAGCAGAGTTTCTCAACTCCTCTTACTGGCGCCAGCTTTCCTCCTGCCAATCAAATTAGAATGCTATGTTTTCTAAGTTAATAAAGGTTAATTGGACATGGA-AAGGGAAATTGAACATCAGAAATATCTATCTTCACATTATTCTTCTCTAAAATGTGGTGATTAAATTTCTGCTTTTCATATGTGCAGCTGAAACATATTTATTC------TGAACACAAAAGAC--TCTGcttataatttcagaaaattgaGCTAAAATATCAGGTTtactgttttcatctttttagcatacatttt----ttgattatttctgtCAGGAAAAGTTGATGTAGGATTATTT---GTGCTTGGTAAGCTTCAT-----GGTTTTCGCTTTCCTTTCAGTCATCCTCCTCACTCTTAAAAAAACTTGTCCTTTGGAAACGTGCGAA

a score=16436
s chr3           155979646 509 + 160039680 acacacacaTGATTGACCCTCCCAGATACTACATATACTGGAAACACAGGGTT-------GATTTTTCTAGATTTTCC-----AACCAGTATTCTCTGTGTACCTCCAGCT-ATGGACTATAGACCAAGTTGGCATATGTTCTTCAGTTTGGCCTCATATGTTTCTGCTGAATTGGCTTGTGTCTGGGCTAATTGACAGTAGTGACAATGCAAATGATATGCAAATG-AACCCCTCTGGGTCTCCTTTCTAAGTTCTATTTATGCCTATGCAAACGCAGCACTTTGTAACATTCCCAGACATTTAATTTAGTGGTTTGTGTAGACATTTAGTATTATTGACAATGATACATTGGCCTGCTATGGTGTCTGTCCCTGATAAACGTTTTTACTTTAAACACATCATTAAGGCTGATAAATTTGAAGAACATGAAATGAAAGCTGATAATGTTGTTATGATAAAATTGAGTCAAGGAAAATTTACAGCTATACTAATAGGCTGGGGCCAAACATACTCCCtcacac
s HiC_scaffold_1 143076180 497 + 233722169 ACACAAAC-TGATTAGCTTTG--AAATATTTAACGTACTGAAAATATCAAGTTTAGTAGtaacttttctacttttttctttttcaccaaaACTGTACAGGCATCTCCTACTTATGGAAGTTAAAGGAACTca-cat-ttttcttcagttttgcctCGTGTGT--CTACTGAGTTGGCTTATGTTTGAGTTAACTGGCAAGACTGACATTAGGAATTATATGCAAATATAGCCCTTCTGGAACTCCTTTATATGCTGAATTGATGCCTAGGCACACAGAGCACTTTGTAATACTTCAGGACATTTAATTTTTCGGTT--TGTAGGTTTATAGTATTATTGGAGATGATGTGATGGCCTGCTACATTATCt----ctgacaaacattttctctttaaacaca-----AAGGGTGATAAATTTAAAGCAC----AGTAAAAACTGATAATGTGGATATGATACGATTAAGTCAAGG-AAATTTAAAACTGTGTTGAGAGTCTAgtcc---acagacacacacacac

a score=42837
s chr3           155988064 1968 + 160039680 TGGTTAATGAGGCTGGTCTTTTTCATTTCATGAT-CACTACCTTCTTAATCAGTGCTTCTCCTGCAAT-----AATAACCCAATGCAGATTCTCTCATAGGGGCCGA-----------TTATTTGATCAACATGTTTTAAC-CAATGCTTCCATTGTAGAAATGACCCAACTTGTAATTCCTTAGTGTTCCTTCACACACACACATGATCTCTTCCTCTGAAGCTGTGACA--TATGCTATCAAGGTAAAGCCAGCTCCACAGCACATCATAAATACATTTCACACATTGACAA-TTTCAGATTAAGGTTTCAATAATACGCCTTTGAGCTCCCTGTAGGATTGAGGTGTCTCCTGAGCCCACATTCGACAGCTGGCTTCCATACTGCTATAGGCACACATGAACAGCTACAGCAGGAAG------ACAAAGGTCATTTACTTATATTTTAGGGATTATA-GGATGATGTTGGTCAACACATCTTGCTCCACAGAAGCTAGTCAGGGACTGGTTCTAAATATAACATATTTACCCCGAAAGGCCCAGAAACCCCCCC--------------CCCCCCTTTCATTCAGCTTTTCAAAGCAGGCATTTAAACACAATCTAGAAAACTAAAACTGGAAAGA-----GCATAAAGC-AACAAGAAAGGTCTATAAACACAGAAGTTGGGTTTAGGAATCCAAGGTCTTAGTTACCACTTACACAAGATAGGAAGCCAATTGTGTCTGAGACTCATCACTTCATTTGTCACAGGCTACATCACAAACATGATGATTTTGGCCTTGGGACATGTCAAAGGGCATTAAGTGGA----TTCAAGTGCTGTTGCATTTTTATAGCACATCTAAATTTAAGGTCTATCCTTAACTCTTGGAAAAGCCTTTACCTGTTTCCCTTTTAAAAATCTGCATTTGGGAAGAATCTGAGACAGTGGACTCGTTTTCCTTTGCGCAGAATTAACATGGAGCACAGGAGAATAAGACATTAGATGG---TTTCCTGTATCTCTAACTCTATTCTTGTTTTT-ATTTTATGATTTTTCTTGTACATGTATTTATTTGACAGGCCTTT-ATTTATGGAAGATGTTTTATG-AGATCACAGCACAGGACCTCCTAGTATGTTTTAAACTCATCTTCTCCAACTTGGTTATATTTGTATCTATCAGTCATCACACTGTTGCCTTGGTCCTGAGAGGACAGATTCATAAGGTCATTATGGAGGTCAGCAGCAATAGCTATCTCTGAAAGATGCAATCAGGTCTGCTGTGGTATCAGAGAGACTGTTTATTTATCCATTTAATCTTTAATTTATTTCTCAGACCTGTTATTTTGAGTTTATCACCTATTTCATACCTTTTATAATAAGGTTCAGAAGATCTGTT--TTTTTTCATACTGAATTTTTGAAACATAATATTATTGGAATATCTTGGCAATCTATCACTGACTCTGAAA----GAGAGGA-AACTATTTTTCTAGGGTTAACATGAACATAGCCAGTGGGATTGCTTTCTATTATACTTA-----CTTTATATGATACTGCTACAATGTGGAGTTCACATATATAACAGTGAATTTAT--AATGCTAAATCTTATTCACAAAACATTTTGCGTTGGGAAATCACATATCTGGATAGTAATTAGCTAAGGGTTTGGAGCC----TGTACTGT---------------TTCTGAGCAGACTTCCT---CACTATCTCTCTGTTGCAAGAGGAAGATTGAAAATGTAAAGAACATAGAAGTACATGTGAGATAAAGAAAAAatatataattttatgcatatgtgtgtgaatatatacacattatatatacatactatttatattcatctgtaaatacaG--ACAGAGAATACAAAACTTGATTTTTATTTTAAAAATTTAGGACTTTTGCT-GTGCAAAGAGTACAACAAATTGTCTCATATGTTGCTTTAT-ATAATCTTTTATTCTCATAGTAAAACACTAACAAAATACTGTTACTTAATTTTATATGACTGTAATTTTTTTCTTTGTAAAAATTTTAAAGAT
s HiC_scaffold_1 143091889 1923 + 233722169 TGTTCCATGAGACGAATCTCCTTCATTCTgcaatataatattatttt---tagttcttgcactgaaattaaaaaaaaaatcattgctgtTT-----ATGAAAGCCAAAACCTTTTGTGTTGTTTGATCAAATCACCTCATTTCAATGTTCCACAAATAGAAATGATCAAAGTCATGAGTCCTGAATGTGATTCTATAGACACC----ACCATTCCCTCTGAAGCAGTAAAAAACATGCTATCAAGGTGAAGCC--CCTCATAATGC----CAACTATATTTTACATACTGACAAATTTAAGCTCAGAAATTAAATGTTATGCCGTCAGCAACCACTTAGAAGGGGAACATCTGGTGATTTCACATTTGGCAGCTGGTTTCCAGGCCTCCCAGTATACATTTGAGCAACTGGAACAGAAGGGATAAAATGAGGGATTCTTTCTCCTTTGTAAGAGACTATCCAGATTATACCCATATTCACTAATGAACCCACAGAA-CAAGGCAAGGGTGAGTTCTACACAGAGCAGATTCACCCCG------CCACACACACCTCTTGCAGCAAGAAAATCTTACATTTCATCCAGCTCTAAAAACTGGACTTCCAAAAATGATTTTAGCtatacaaaatggacaaaagttggaataaaatgaaaaagagaagtcCAGAAAGA--GAAGACAAGATTTGCAGTCTTAAATCTTATAAACTAC------AGGACCTGAAGTAA----TGCCTAAAAATTCT-GCCTCTCTTACCAAAGAATATTTAGTGAACCTGAAGATTTT-----TAGGAAATG---AAAGACACAATGCAGAGGTTTGTGACTACTGTCATTTTTCTGGGGTTCATCT---TGTAAATTATACCGTTAGTCTCTGCGAAAGCTCTATCCA--TGGCCTTCTACGGATCTGCGTTTAGAAAGAGTCTGAGACAAtagatttgttttcctttcagagagataaatatatatttcaacaGAATAGAACAACAGATGGGTGTTTCAGAAATTCATAACTCTGAacacatttttgatttcatgatgctttttcttcatgtatttatttcagagaaatttcatttctaaaaggtGTTCTACATGGAAGACCACAAAGCACCTCCAAAGAATTTTCTAGTTTGTCCTCTACACTTTGGTCCTGTTTGTATCTATCAGTCACAGCACTGTCATCTCCGTCTGGAGAAGACACTTTCACAAGGTCATTAGTGAGGTCAGTAGCAATCACTATCTCTAAAAGATCCAATCAGGCCTGCGGTGGTATCAGGGTGACTGTTTGTTTA-CCAtttaatctttaatttattttccaaaccTGTTATTTTGAGTTTATCACCCATTTCATA-CTTGTATAATAAGGTTCAAAAGATCTGATACTTTTTTCATACTGAATTTTTGAAACATAATAGTATTGTGGTATCTGTGCAATCTATCACTGACTCTGAAATAGGGAGGGGAGAAGTATTTTTCCAGGGTTAATGTGAACACATccatttgaattgttttctatTGCACTGATTTACTTTTACATTCCCATGTTGCAATGTGGAGTTCATACATGCAACAACCCACATACCAAATAATAACTGTTGTTCAGTACACACCCTGT-TTTGAAAGCTAAATATCTTGA----AATCAATTAAAGATCTAGAACACAGGTATATCGTGCAATTGACACATTGCTTTAATCAGACTTTTTGGACACTA---------TGTAAGGGaataagagaaaa-----------------------------gaatgaaaattacgTAGTGTTATCTACAGTTATACAGATATAT--------TGTAAGCATAA-----AGAGAGATACAGAAACAGAGCTACAGAGGAGGAAAAGTTTTA-TCTTATTCCTAGTATCT--GCCTTTTATTCATGCAAAGAATACAAGAAA---ACTGATTTGCCTCTTCCTAATGAATTTATGGGCTAAC-------------CAAAATGCTG--------TATTACatg-------ttgtttattttatgaaaattttaaaagt

a score=69582
s chr3           155992936 2073 + 160039680 TTTATGTGTTGGAGAATTCTGTAGTTT----------AGCTTCATCAAAGAAACATTTGATCAGG----GTTAAATTACAGATTTAGGGTTATCTCT--GTCTTCAGACTTTTTAACTTTACTAAGACGGATATCAGTGAGAG-CTGTCAAGATGGTTGCTTTGGTTTATTCTATTTCCTGGTGGTCAGCATT-CTCAAAGGAAAATAAAATAGACTCTGACCTTTAATGGTTTTCATTGGTCTGGAC-AGATCTAGTTCTAAAGAGGTCCAGTAGGACT---------GGCCAAGAAAAACTGTCTGTACAGAGAATGCTATCTGAAGATTGTGTTGG-TGACCAACAAAAGAAAGAATAAAGATTTA-AAGAAGCCAAGTGAGGAGACATAACCTCTCCCTCAGG-TCTCATGGGACTTTGAATTGCTTCTCCTTTCTCTATTTTTATCTAATAAAAAGGAGGACTTACATCTTGGCAAACTCATGGGTTCCTCATTGTCTG-GTTTAAGAGAAAGAGCAAAAGCCAGGTGAGTC---------TTCCACCTTTTGTCAGCTG-TTCTAAGAAGGAAAGAATGCCAGGGATGCTCCAGCAACAAAGTGGTCCTGGAG--GCAGCTCTGAGCATCACTAAGAACAGGGTCCCCGGTGCATCCTCCCAGGGAAATTAAGACTCCCACTTATCCAA-CATTGTTTTTAGCATCTAAAAAACTAACAATAATGAAAGTTTAAAGTTCATTTAAAATTTTCCAAAAGGAACTCTTGCTAGGATAAGGTCATTCAGGGGGAAATTGACAGAGCACTGAGAATAGACTTGCCCGATGAATAGAGCAGCCCAGCCATAAGAACTAAAGTGAAAATCAAGGGGGGGGGGAGGTTTAA-----AACAGCTGTCT---GGTGATAAATACATTTTGAAAAGCCTCATAAACCAAGTGTGAACATTGATATTACTAGTATAATGAAATGGGACATGAAAAAGGATTGCATTTGTAAATAATTAGTTTTATCAAAGAACTAGATGGA---CCAGGGATCAAAATCGGTCTAAAAATGA-----TTTTATTGATGTAGAACTTGCATTTAAGTTCTAAATATCTATTAATCACACCATAGGTTATTCCTTTTATCCAAGCAAGTG----CATTGGTTCTCTGGGGACATCTCCAGATTTAACTGTAGAAAGAAGGAGATAAAAGACCCTACACTCAGCCTCTCTGCTCTTTTAAAATCACTAAGTAGCCAGCTGTTCCATTACAACAGAGCCTGTACTTTGAGCACATTCATGACATCTATCAAAACGGTGTTTACATTTCCCTAATAATGTTAACTTAAGCATTTTATTGCCTTACTCTGCAAACTGTCTGAGCACACTAAAGAAATCTTCTCCTGGGAGAGGCTGGTTAAGCAAAAGGCAGACTACCCACAAAGCCCGGGAGCTCTGGAGGTT-GCTGGGTGGCACCTGCAGAGACCCAGC-CTGAGTTTGCTTTTGTCAGGACTCAACTGGGAATCCCTTGTGGTC-AATAAATGCTGGAGAAAGCAAATGTCCTTCCATATAAACACCCAAGGCTCTGTGATTTGTGCAGTTC-AAAC--ATGGCTGCAGAGCAGATGAGAATCCAAATAAGGAGGCTACACGCAGGTGG-TTGTTGGTCCCACATTGCTGTTTAAATGCATGTGGTAAATCCAGCCACTCTTCCTTGCTCCTCAGCACTTTCAAGAGCAAGTGGCAGAAATCAGGAGTTTTGCACCTAATCCACTCTTGAGTTACCCAACCACAAAATTATATTTAAGCAACTGCCTTGACAGCTAAAATGCCAGGCTTATTTTTCTTCTCTTTGCTCTAATAACTTAAGAGACGGGAGATCAGACTTTAGGAAAGGCTCCAACGTCACTATCTCTGGCCATTTATAAATAGAAATAATAATGGCGTTCATAATAAGCCCTGGCTGAGGCCT-TAGAAGTTATTTGTATTTTAAA----ACTGTAGAGTTTGGAAAATAAATGCATGTAGGTGTCTGACAGTAAACTG----------TCCTTGTAGGGAATTTG-GCACCTTGGTATTTGGGTTTGAAATTTCTTTAGCTTCAGCCTGTGATTATTTTCTTCCCTCAAGCTAACAAAATACCAAATT
s HiC_scaffold_1 143095300 2060 + 233722169 TTTCTGTATTGGAGACTCTAGTGGTTTTAGCTGTACCAGGTGCATCAAAGGGCATCTTTGTCAAGCAACGATAAGCTATGGATTCACAGATACCACTTAGGCTTCAGACTTCCCAACTTTACAAAGAGGTATACCAGTGAGAAATTGTCAAGAtgatt---------ttttctatttcctgatgaCCAGagtttctcaaaggaaaataaaatagatccTGATCCATAATTGGTTTCATTGGTCTGGACTATATCCAGTTCTCAAAGGTTCCAGTATGATTCATAAGATGAGCCAATAAAA-TTACCCGTCAAGAGAGTACTGTCTGAAGATTACGGGAGATAGCCAACAAAGGGAAGAATAAAGACTTAGAAAAAGCTGAGAGAAGAGAAGTAACCTTTTCATCAGGGTCTTCTAGGGTCTTGGATTgcttctt-tctctccatttctgaCTAATGAAAAGAAGAACTTGTGTTCAGGTAAAAGTTAGAGGTGGTTATTATTTgagtttcagggaaaaaa-aaaaacagagtgcATTGATAAGCTTTTCTATCTTCT---AGTTGAttttgagaaggaaagaaagccaaAGAACTAGTAGCATGAATTCTGGCCTAGAGACGCAATCCTAATCAAAACACAGGATAGAG-CCTGTATACACACTTTTCAGGAAATTATGCATTCCATTAACCCCATCATAGACTTTAGCAACTGATAAA------aaaatgga-----------cttttaaaaattttaagaagaaaacgTCCCTAGGATAAGACATTTCAGGGGGAAACTTACAAGCCGCCGAAAATAGTCT---CAAAAAAATAGCACAGCTCAATGAta-gaattaaagtaaaaat---------------gtctaacagataaaagccatctttcaaagataaataaaatttaaaaatctccatGAGTCGAGCCTAGAGTTAGATATTTGCATTTTGATTAGATACCACAT-AAAAATGATTGTATTTGTAAATAATTAGTTCCATCCAGAAACTAGATGAAGAGCGAGGGATCAAAGTCAGCTAAAATATTACAGATTTTTATTGATGCAGCCCTTGTACTTGAGTTCGAAATGTCTATTAATCACATAATAGATC--TCTTTTTATCCAGGCCAGTGTCTGCACTGTTCCTCCAGGGACATCTCCGAATTCTATTggagaaaa---gagataaaagatgtTACATTCAGCCTTGCTGCTCTTTTAAAATCAGTAAGTAGCCAGCTGTTCCATTCCAACTGAGCCTGTACTTTGAGTCAATTCATGACATCTATCAAAACTGTGTTTACATTTTCTTAATACTGTTAACTTAAGCATTTTATTGCCATGCTCTGCAAACTGTCTGAGTACACTGAAGTAATCTGCTCATGGGAAAAGCC-ATTGAGCAATAGGCAGACTACATCAAAAGCCTTGCGTCTCCAGAGGTCAGCTGCGTGACACCTGTAATGACACAGAGCTGCTGTTGCCTTTGTCCAGGGCCAACTGGGACTCCTCTGTGGTCAAAGAAGTGCTGGTGAAAGCAAATGCCCTTCCCTGCAAACATCTGCAGGCCTGTGGTCTGTGCAGCTCTAAACAGAGAGCTGCAGAATTGCTTGGAATCCTAATAAGGAGATGAAATAcagattacttttttaaaaaacattgtttttaaaatgcactttGTGAAACaaggcttccttccttcccatccATGACTCTGAAGAGGAAATGCTGAAAATCAGAATTTTTGTAACTAAT---CTCTTGAGTTATCGAAccacaaaattatatttaagcAATTGCCCTGACAGttaaaatac--agtttattttt-ttctgcttgctcaaataacttagaa---------------------aaaaattCCACCTTCATCTTCTCTTTC---TTATGCCTTGTGATAATAATAATG-------TAAACTTGAGCTACAACATGTAAAAATTATCCATATTCTCAATTATTTTATGAAGT----ACAATAAGTGATTTTTGGTGG-TAACTGTATACCTTAACTTATACTCTTCGAATGAGATTTGAACTCTTGGGTGCGTGGGGTAGGAATGTCTTAAAATTTATCCAGGCACAATTTTCTTCCCTTAAGTCAATGTAATGGCAAACT

a score=11991
s chr3           155998475 879 + 160039680 GGAAAGAATGACTTCAGTGTACAACCTAATTTTTTTAACA--ATGA-------AATTTAACAATATACATTAACATGATTGAG-TTAATCCAAAAGC-TTTTACTATTTTTACTTGAAGTTACTGCCATTATTACTACC--CAATCTATTATCTGCCCTTGCTCCTTTAAATTTGTTTTTAATAATTTTTC-CATGGTA--TTCTGGTAGCATACTGTGatatacatatacatatacatatacatatacatatacatatacatatacatatacatcatatacacacacaCACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtgtAACTACTGACTTCTTGTTTTCTAAATCGGCAGACACAGACAGCATATTGTGTTTTAATTCTCAGACTCAGCAG-------TGGCCGCTAATCTGCTACAGAGGTGCTACTACAGACTAGTCATAACAT-----------ATGATTTCTTCAAAGCTATTAACTT-AAGAGGATACAGAATATGT-GATTTTGCAAGGAATAATATG-----------------AAGATATATTTTCATCTGTTCTTTGAGAGAAATGCCAACATCGTATGTAATGAA-AGGATTAATAAGCCAATTGTTTCCAAAGTAGACATTCTTTGGACTGTTCTATGTCTAAAAGTAGAATGACGTGGCAGATCACTGTGACATTAATACTGTGAATAGTGT-TGGGAGTCAGACAATATCATTCCTGAAGAGTTTACGATGGAATGAGATTGAAGGAGATATGCCAGCACATGGCATTTGCAACTGTGTCCTTTGTATCTCTGCATGATCCTGGGTTTTGACCTACAGATACAGATCCCATGCCTTCATTAA-ACTGACCTATCTATAAGAAATCAATCTTTTATTTAAATATCCATAATTAGGGTGAGT
s HiC_scaffold_1 143101121 812 + 233722169 GAAAAGAGTGGCATTAAAGCCAAACCTTATGT----AACAGAATGACTGTACAAATGTGATAATCCATATTAGAGTAATAAGGAGTAAGCAAAAggtgttttattatttct-cttgacGCTATTGCTGTTATAATTGCCAATAAGCCTCTACCTTGCCTTTCTCC-----ATTTGTTTATAACAATCTTTCACGTGGTGGGTTCTGGTAGAATGCTGTGCTTTACAAGTAT------------------------------------------------------------------------------------------TATTTTTCCATGACTG-GCAAATGCTGACCTATTGTTTTCTAAATCATCAGACACAGCCAGTACATTATGTTTTAATTCTCGAACTCTGCAGGTAGCGATGGCTGCTGTTCTGTTACACTCAGGTTTCTGCAGACTATTCATAATGCTTCATAATGTAACAGTTTCCCCGgtgctatttatttaaaaagaacacaGAATATGTGGGTGTTACTAAGGCAGATATGTTAAATGCAAAAccttaaaagaattttattaagGTTTTTATGATAAAACTGTCAATACCTGACTTGGTAAAGAGAATCAGTAAGCCAGAGTCTTTCATTGGAGATATTCTTTGTTATTCCCTACGgtcaaa--tagaataaaatggcAGATCAA-ATGAGCTTAATACCATGAATAGTATATAGGttctatgttattttatttcttttcattatactGAGGAATGTATGTGGGAAACAGTTACCTTCA-ATAGCTTCTGAACTTA-----CTTGTA-CACTAAATTATC--------TGATTCATGG----TGCTACCATGTCTTTACTAAGACAGAAATAGCTAAAATGGTTCAAAGCTTTGTTTAAATCTCTCCAATGATAGAAAGT

a score=12211
s chr3           156003553 845 + 160039680 TTTTTTAAAACCATATCTTACCTTCTTTGTAAAGGGA------------TTAATGTTGTTTATGTAGTTCGTT-------GTGTCTTGCTTTGGACAGTA----------------ATTTAAGTGTTCAGAGTCT-TGGTACCCAAAG--TTGTTTCAGATAAAATAATTCTGCCTTGATCCATGCTTTGATGTTTTCCTCTGAGACT----GCATCATCCAAGCAGTAGGTGTTCCTTCTGTCAGCAGCCAACACCAGGAACATGGGCAAAGAGCAAAGCTCTCCAATCCCAAGCTGTAAATGAGCTGTTTGATGTAATAAGAAGATGGAAATGTGGGATTATTATCACACAGTTGTCAGGTGGTTACCTGACAACTGTGCGTGGAAAAAAAAAAGCTGGGAAACTGATTCTTCTAAT----------GTTAGACTCACAAAGGAGGTGGATGGCTC-CAGTTTGAAACACACCAGTTAGTGGCAGCTGAAAGGAGT-----TTTTTAATGGGTATTTTGTTCGTTTATTTTAGTTTTGATCAATAATGC----ACTTGCAATATCCTACAGTAGTTCATCAAGCTCGCCTCTAAAGTAGAGAGGGAAGAGGGTAGCC-CTCACA--------TTCCCAGCCTCTAGTGTGAGACGAGGTATTTTCTTTTTCAGAACATTTGAAGCAGTCTACAATTCCACTCTTAAATGAAAACAACCCGAGAAAATTGCATACCCAGGCAGAGTTCTCTTTTG------------TAAGTGAGGCACATCGTGGGGTGTG--GCTTGAATGGCTTCATCCTCCTCTTTTTGCTATCACAGCTAGGGAGTTGATTGAGTAAATGATGCAGCCACAAGGAAATACCAGTCTAACCAACAGGAAAAGAAAATTATACTTTTGGCCTTCCTGCCATAAGAA
s HiC_scaffold_1 143113316 867 + 233722169 tttttcactactatgttttcctttccttgtgtGGGGAAAGTCTCATGCATTGCTGTCTGGTTTGTAGTTCACTCCTATCAGTGTCTTGCTTTAGGCTACAGAATGTAGCACATGGCACGCAAATTCACGTAACCTGTGGCATCTAAATGTTTGCTTCAAATAAAAG---TTTG--TGGGTCTATCTCTTGAGGCTGCCCTGTGTCAATAAAAGCATGTCCCAAAGGGCACCTGTTAC------------CTAATAATAAGAACATATGTA--GAACAAGGCCCAACAATGCTGAGCCATAAAC-AGTTGCTTGTTGTTGAAAGTCACTGAAACAGTGGGATTGTTGTCACA---------------------ACAAAGGCA-----ACAAATGGAGGTTGAGGACTTGATACATTTAATCAACATCCAAATGAGGCTGATGTAGGTGGTACCTGGAACTCATGCTGAGAAGCATCAGCC--TAGTAGTTGTAAC-AGTATCTCTCTTTCACTGATACTTTGTttacttgtgtttttctttag-aCTAAAGCCATTATTTGTGATACCAAGTAGTCATTCACGTACCATGGCTTTAA--TAAATGGAGAAAAGATTACCTGCTCACCATTGGTGTTTTTCTGCTT-----GTGAG----GATTGCATGTTTTCCAGACAATTTGAAGCAGTCTGCAATTCTTCTCTTGCATGAAAACAGTCCCATAAAACTGCACACCCAG--AGGGTTGCCTTCCGCCCATTTTCTGTTAAGGAATCCACATCCCAGAATGTAGTGCTCTACTGCTTTTCCGCTCCTCCTTCTGGTAGCACTGCTGAGAAGTTTATTTGGTAAGTGATGCagacaaaaagaaataccaaTGGCGAGAATAGGAAAATGAAGTCATTCTCACAGCCTGGCTGcttcatgaa

a score=17226
s chr3           156013226 771 + 160039680 GTTTATAGATGTGCATGTGTGTGTGTTGTCTGCTGTCCATGCAGATCACACACATCCATGTA----TCCCTAGCAC-TGAACAGATTTGAGAAG--------TCAGTAGCATGAGTTTTCTGTCCTACCTTTACTCTTCATTTGCCCACACAGATTCTCTGGTGATATGATCTTTAATAATTTTAATAAAACCTCCAAATACATGGGAAGGATTATCTGAATTATTTCTATGAGTGACACATCTTCTGGATAAGACCCAAATTGTGGCATAGTGGATAAATCTGCCACACTGCTGGAAGCAGTGATATCTGCCCAGACAATGCCAGTGATAAGGACCCTGTTTTTTTGTGCACCTGGCTCAGGTCAGGAACTCTCTTGGAATTAAGCAAAATCCATGATTAAAAAGAATTA--AGAAATGTGTCCAGAATCTAGATTAGCATGGCATATCTAAAATGACCCTTGAA-----------AATTCCAAGGATAAAGA---CACGTGGTTTAGAATAAAATATGATTTGCATTCATAAGTCA-AGGAAAT-----AACAAAGGTGCCCATTAAATC-TAAATAATAATGTTATGAAATAAGT-------AATGCCCAAATGAAAT-TTTAGTAAAGTGATGGCCTAAAAATTCCATTAAATAGAACACACATTAAAATGTATCAGATTGCTGTAATAAATATCAAGATGGGAGATGTATCTGACAATATTGGAAACTCATTTTTACAGAG-TTTTTAAAGATTAAAAACAATTCACTGATTTAT-CATTTTAATTAA--CTCAATAGAAGAAACAGAAATATG
s HiC_scaffold_1 143131181 785 + 233722169 GCTTGTATATGTGCAT--------------TGCGATTtatg--aatcacacacacacagatgggcTTCCCTGCCATATTTAGGGATTTGAGAGAAGAAAGGTTAAGTAACAAGAGCTTTGTCTATTATGTTTGCTC--CCTCTGTCatccctcctcctctgatgatatgatctttaattattttaataaaattatcaaataaatgGGAAGGAttatctgaattatttcactgtGTGAGATATTTTCTGGGTAAG--------TGCCGGATATTGGGAAAATCTGCTGTGCAGACTGAAAATGTGAGATCTTCTCAGACAATTTGAGTGATAAGCACATTGCTTAGATGTAGAGTTGGCACAGGTCAAGAATTCTGCTGGTATTCAGTGAAATTCTTGATGAGCAAGAGTTAAGAGAAATGAGTCAGACAGCCAGATTAGCATAACATATCCAAAATGACCCTTAGAAGTGAGATAGTAACCCAAAGGGTGCTGGTTTCACGGAGGGCTGAGAAAAGTCTACCTACCTTTCATAAGTCACAGaaaatagatgaaataaaatacacattaaatCATAAGCAACTATTTCCTTTAATACTTTAATTTCAAGGTCTGAATTAAATCTCTCATAAGACAATgtctaaaaatttcaaataagttGTCTAC-CAATCAAATATATCAATATTCCATGGTACCAATGAACAAGTGACCTACATCTAAAAAC-TAAGATAGATGTTGTTGTTGTGACCTATAAAATATGAAAggaa------gttttatatattttaattagacATAAATTGAATAAACAGTGAAATG

a score=9571
s chr3           156018911 225 + 160039680 taatatattttatgattacataaaaaatt--aaaagaaataatatCCCACACTATTAATTTATAATT-AGCCAGATATTATCCATCACAATAGATAAAGTTTTCAGGTCAATTAGCTAAAAGCATTGACAATTATCAAAGCAATAAACCACAGTCTAGCAATTATG---TTTTACATAAAGTTTAATTCATAATTAGACAGATAATGTAACATGA---AAAAAATTGAGGTTTG
s HiC_scaffold_1 143143600 232 + 233722169 taaTAT-TCTTATGAATTCATaacaaatctaaaaaaaaatcacaaactaccacatgattttatattttatccagatATCAAATACTACAATAGATGAACTTTTCAGGTCGATTAGCTAAATACAATGACAATTATGAAAATAAGAAACTGCAGTGTAGTAATGATAACTTTTTCCATAAAGTTTAATTTGTAATTAGACAGATAG-GCTACATGAGGGAAAACACTGAAGTGTG

a score=19138
s chr3           156022179 1596 + 160039680 ATTCACATAGACCTCTCCAATTCATGCCCACCCATCATCTGACAAACCTACAGCTTTATGATATTGGGAACATGTCACATGATG----TGTACAGTTTGTGGTTAGGGCATACTGATC-----TTGCTAGCTAAGTCTCTATGTTCATCTGAGGAGAGGTTGTTGCTTCTGGTCCCAGGTATGAAA--GTTCAGAGAGTG----TCATGTG-ACTCTCTGGTCTGTTCTCATTCCTTCTTCTGTATTTGTAGGTAGTATCTAGGTATTTTTCCCATGGAAGATGTTTGTAGTCCAAAACACTTCATATATAAATCCACACATCTCTGATGGTATCACTGAAAAGTGATGTAAACTCATTTATTTCCATTTATCAA-TTGGATCTGTAAGGT--GTAGAAAAAAAGTTTCCTGATCAAAT----CAGGACATGAG----AACAGAGAACATCTA-TTTCCCTCTTTACAGAAATGCCTAAAGTCTTTTGAGATGAATCACATAAAACGC--AGAGCCTCCTTTCTGTAGCACAAGGGAAGGCTAA----TACAGGG----AGAACCCTGTACAGGG------TGAGGCTGGAAATATCTGAATCCTTTAT--TCAGAGTAGAAATCTTTGGGAAGA--AAAAGATGACA-----GTTTGCA-TTCACT--GAGGGAATTAAAAACCACTAAAACATGCTCATTACAGTACCTTCTCCCTC--------------------------------------------------------------AATGAGAAAGGAATTGCTTGA--GTTGGTCTTGATGTGAGAAACAATAAAAT-ATTTAGCCAATGTTCCCTGGGAAACTTTTAAAACATTGTATGTATTTTAGTCATAAATACACCAATTAAATGGTTTCAAATTTATGAAATGTGGATAACTATGA-GAGAGTGTGGGGGTTTTACTACATAATAGAATATCAAAATTGGTCATTCTAaataataataataataataataataataataataataaAACAATGCCAGTTAAACTTTTCCCACATTGACTTTCATAAATTAAAGTGTATATGTTTTATATAGTGGATGCTTCATTAAAACACTTATATGtttttatttttaaatatgagttttctgtctgcatgaatgtctgtataccatacaaacttaagaaggacagaaaggagtgtcagatcctctgggatcaccctgtggatgctgggaactaagagagttcttagggaagaaaagacagtgctcttaatcaccaagccataactccagcTGCTAGTGGATGATTTTAATTTAAATATATTCAGCATTTATTCTATTTTTATTATATTCATGTAACACATTATAGACACACACAT--GCATTTTCTGGTAATGTGTCATTG-TCTAATTGCCCTTT--TTAAAAAGTGGTTTTGACAGGTCTTTAAAACTAA-TGCATCTGTATGCATTTTTTAAAAGTGGAGCCC----AATAGAAAG-------AAGAGCATAGTCACTGTAAAACAAAGTTTTTTCTTTCTCTAAACTTCACCCATTTCAGAGAGTGTCTATAAACTTGAAATATGGTTGCTAGTATAGAGAGTCAAAATGGGCAAATGGGTTCACTACGAATT--------CTTTGCCAGTATCTCACATTAAACTGGCCTCTATAGA-GAAAGATTTTCTAGTACAAGCAAATAAACTA---------TAGGTAGTTACTA---GCTCTTTGTTTG
s HiC_scaffold_1 143149995 1522 + 233722169 ATTCACCTAGACCTCGCTAATTCACCACCACCCATCACCTGCCAGAGCTACAGCTTTACGATTGTTCGAACATATCACAAGATAGATCTGTGTGCTCTGTCCTTTGGGTacactaatcttttttttttttctgag--actgtGCTCCTTAGGGGAGAGGTTATTGCTTCTAGTCAGGGGTGTGAAAAGGTAATGAGAATGTACTTAATTTACACCCTCTGCT---TGCCATTTGGCTCATCTGTGTTTGTTTCTACTTTCTGGATA-TTTCCCAAAGGGGCACTTAATTCAtccaaaatatttcacatataaatCCACCCTGATGTGGTAACTTCCCCGACACATGATATAAAGTCATTTCTTTCTATTTGCCAATTTGGCTCAATAAGCTCAGGAAGAGAAAGTTTCCCTGatcaaatggaagagaaaaagagctctaatagAAGGCACAGAGGTCCCCTTTCTCCTGCAATTCCCACATTCCCTCCAAATGAAACCCATAAAACACTTGCAgctttatttttgcaaaataatggAGGGCTAGCTGTTGGAGGGGAGAAGGAACTAGTTTAAAGGTTTGCTGATGTTGGagat-ttttagttctttattctcAAAGTTAAAAGCCTTAGGAAGAGCAAAAGATTGTATCTGTGTCGGCATTTTACTAGAAGCGGATCAAATGCCACTGACGCCTGCTCATTAGGGCTGCTTCTGCCTCACCTGGGGACTTAAAGAAGTCTTTAGGAGAGCTCAGTGCGGATTAACTTCATAAACGGgaataatgaggaaaaaaaatctggatGGTTGGTGTTAATTTGTGAGAGAATGAGATCATTTAGTTGCTATGCCCCggaaaccttttaaaat-ttaaatacattatagTGAGAAATATACTTTTTAAGT-CTTTAAAGGCTAGCACAGACGGGTAACTACAAtgatacttctttattttttccagtgtaAGAAAGACTAGTTTTGGAAATTCAAAGTAAAAGTAATAGCGATGATAATAAAACTAAC----------TACCAATTTTATTTG------ATTGAGTTGAGCAAATTAATGTG------------ATAGC-------------------------------------------------------------ATTGTTTG-----------------------------------------------------------------------------------CTTGGGGAAT--------GTGTTT-----------GTCATAACCTC-------------TAATTTTATTCACAAGATACGTAACATCAA------------------CACATAATACATTAGAAGTACACATGTAGACATTTTCTACTGATCTCTTACTGATCTAATTgccatttactttaaaaattattttaaaagacccTTAAGACAGATTGTCTCTCTATACAGTTGGAAGATTTGACGTCCAGGAAATAAAAAGGTGTTTTAGGGTCAGAGCATCCATTAGTGTGTGTTTTCCCCTTCTCCAAACTTCACACTTCC---AGAATGCCCTGTAACCTCTTTTAGAGCCGCTCATTTTTAGAGTTGATGAGACCAAAAGTGTTTTCTAAGAATTTCTTTATACTATACAAATAGCTGATGCTAAATCCatatttatagattaaaaaatttcTAGTACGAAGCAACAAAATATCTTAAAACTATGTAGCTGCTATTGACTTTTTGTTTG

a score=28308
s chr3           156028357 2317 + 160039680 GGCTTCTGCTTGACTGTGGAAATGAGGCCATGCCTTTTTCTGGAACTTCACTCTATGGGCTCCTATCTTGCTC-TGCATACACGTGCTTTCAACCAATTGCCCACTGAGGGCCCCACA--CTTTGG----ATACCTGAGATATTCTCAAGGGATCATATT---CTGACTCAGAGAGCT------CATCTACATCT--TTCAGTCCTCACCTCCTGAACATTTTCTCTT--AAGGTGCTACCTCTTCTGCATCTGCTACCTTGTGCCCTCCACACAAATCATCTT--GTTAGTCTTTGAACGAGCTTTATTCT--GTGACCTCTCTCAAAGCATGCATCGTATTTTCCCTTAATACTGAATTTCAATTCTAATGTGTTACATGTCAGCCAGCCCTCTTAAATGCATGCTCCTTGCAG-----TCTTGTTACAGTCTATCCTTCT----AAGGAGCCTGTTATGTTACCACAATTACGATGAAACTTTAATAGGTACCTTTGAATACAGAATCCTCTGTTAAATACTGCATGGTTATTCCACGCAGAGAATGTATTTATGCAGCT-GGTAAATCCTTTGAGAGTGTTAGGTTTTTCTGGGCACATAGAG-----------GATTTTGAAATACTAG---------CAACTTGTATCTCAGTCAGATTCTCACCATGGCAACAGCTGCTTACTTCAGGAAGAATGACAGCAA---CTGTTGTAGGCTTTGCAAAGCTTGATGCTCA---GTGTTTTGTTTTGCTTTGTGAGATAGCATTGTACCATGTGCACACAATAGCTCTCTTTACATAGATTATAAGTGTGAGATTATATG----------TCGTTAAAGACCCATTT-----AT-AAACATACTT---------TAAGTTAAAGGAAGATTACAACTATGATCCAGCTTTGCATAG---------TGTAAT----AAAGACCCATGCCTAT--------TGTTCACTAAAACTGTTTAGCTAGAAATTCATCTAATTTATGCTGTAAAATGACAGCATAATTTTCAAGGCAGCTGAAAAATCTCATTAATACACAACTCTCTGTTTTAGATGTAAATATGTGTATAAATATA-GAT-----------------TTTACCACATTTTGGTGTGTTTCTGGCTATCT---------CATTGCAATGGCTTA--------TTTTTAAATTTAAAAGTTTTGTGATCATTAGTG--AAATTTAAAAATTAGAATCTACATTTATGTGGATCTTCTAAAAATAACATACATATTTCTCAT-GCATAGCCTCTCCATTATTATTTGGTATTTTTCTGAGTATTATGT-GACTTCCTCCCCAATATAATTTTA-TGACTTCTTTCTATGTTT-------ACCCAACTCTCATAGAAACACATCTCTAAGATTATC--TTCTCAGACGAAGAGAAATAAGACCCTTAGAAAATTCTTTTTGTCCATTTTTTTTGTTTTTGCTGAAAGAATAGTGGTTTTGATTATAAAATAATGCT-ATTTCTGCAATGCCACATGAAATGGGAGGTACTTGTCTCTTTTGGTACTTTTTTGTCTCAATTTTATGCCAT--GAAATATTTTTGAA-------ATTAAAATTTTTGG-----ATGCCCTCTATCTTAAAGCGTTTTAAATGCATATCAGACATTACCGTGTTTTGTGTATGTTAGTACCAAAGTGTTTTTCTCTCTCTGAGTATTGAATACCATTTATTAGAAAATATGTTTCTGTCACAC-ATTGCTTCTTAATGCAG----------------------CACA---AAGGTCACTGATATTAAGAAAA---TAAATTATTTTT--TGTATTCTTTTC--CCAGTTCTATTCTAAACTTGCTT---CATTTGAACGAACATATGCTTAAAGGAAGACACATCTAT-TTCACTGGTGATGCTATGGTTGGATCAGTTTGTGGCAGAGAATGGAGTATTCGTCTGCAGACCAAGGCCTTTCTCCCTTCTCTCTGCTCCACTCTCTCCTTTCAGCTACTGTGGCCATAAAAATAAGCTATAGTGCATTTCTTCAGAGTTTAGTTACAA-------------GGACAAAGATCAAT-TTCCTGTATGATGAGAGCTG------AAGGGATTTTAAAGTCACAGTGGATGACAGACAACAGAAGATGTGATCCTGCTTGGGAAAAGAGGACCGCATGGAAGCCTGCAAAGAAACTG---ATCTCAACAGGCT------------GCAGAACAAAGAGCTTGTAATCTGTTAGAAGTAACACTTTCTAAAAATTCTACTCTGCTTATCCTTTAAAAGCATGTGAT-TTTATGTATTATGATTTGTATTGTTATTT-AAAATCTTTCTCAGTTCTCACTTTGCATTACACAAAAAGCTAAAAAAAAAAATCCATGAGCACATTCTTCCAATAAATTGGATTTCAACTATAATGTATATAACAAAAGAATAACTTTGAGGAAGTCACGAATATTCT----GTTTCTCACCAACCTTAAGATGTCTATCAACAAGCAGATAAAAGAAAGA
s HiC_scaffold_1 143156360 2417 + 233722169 GACTCCTGCCTGATTGTG-------------------TTCCTCACTTTTATTCTTTGGATTTCTACCTTGTTGGTTCATGCATGTATTCTGA--TATTAGAGATATGTAGACTCCACATCCCTTGTTATCATGCTTAAAATATAGTGTATATATTTCATTTGCCTCactctgatatttatttttctttgaaatctggtTCTAATTTTATCGCCTGAAAgtcttctttttaaatctcttatCTCAcgagatttttttctccttactgCTCAGtgctaattattttttattatttctgaaataagCCATATTTTTTGTGAACTCTCTTACAACGTGTATCGGGATTTCATTAAATACTCAATTCAAATT-TAATGTCCTGAATATCATCTTTCTAACTGGAATGCATAATccatatgggtttttttttttttaacttgtcatTCTTCCAAACAAGCTAGTTATGTTGTCACATTTTTGACAATGCATTGATAT---CTTTTGAATACTGAATCACCTGTTTGATACTGTATAGTTACTCTATTCAGAGAATGCATTCACACTCATAGGTAGGATTGTTGTCAGTGCTCAGCTGTCCTGGTCACATGCAGCCTGTATTAACGATTTTGAAATACTAGACATAAGAGCAACTTGTATCTCAGTCAAATTCTCACCATGGCAACAGCTGCTTATTTCACAAAGAACGACATAGATTTCTGTTGTTGGCAATGCAAAGCTAGCTGCTCaaatgtgttttgctttgtttt-taaattggagCTATA-CACGTATACACAATAGTTTTATTTAAGCACATTACAAATGGAAAATTCTTTAGGAATCAGCTTTGCTTAggtctcattttacaaatgaaaaatgatttctgaatgctatgtaaaagaaatattatGGTCATAATCTAACTTTACATTTAAAATCCCCTATAATAGCCAAGAAGATAAGATTATGAGATATCTGCTGAAAGAAATTATTTGATCAGAAATTTATCTAAATTTTGGGGTAAAATGAAaggataattttt------tttgagaaggcTAACTAGTAC-----------TCTAACAGGTAAAACTGCATAAAAACTTACGATGTAGGAATCAATGTACATTTCTTGAATTTTCAAGTGCCTTTACCAATTTTCTGCTTTCTATTGTTATAGctcagtatatttttttaaaatagactaGTTTTGTCAGGGTTAGTAACAAACCCCCAATAAAGCATCAACACAGATAAggatctg-taaaaataaaatccat-tttctcacagcatagactt-------ttatttccttttcgcTGAAGCATGTTGCAGACCTAGCAAATATTATCATCTCACTGAtttctttgtaagtttttatCCAGCCTAACTC-------AACTGAAGTCTAAGAATTTCATTGCTTGGAAGAA-ACAAGGGAGGagttcaaaagaataaaaatctaaatgtatgGCATTTTATacgaaaggaaaatgtttttcaataAGAAATATTCTTAATTTGAAGAATGCTCCTTGAAATATAACACAGTCATCCTCTTTAGGGCTTTCGC-CctgtattttatatctttaaaaatatatttgaaaaaatggagaaaagatcCTGGTTCTAATGTCTTC--------ACCACTCTAAATCTAC-TCAG------------TGTGAAAATGTTA----CGTATTATGTCCCAATATCCGATT-TTGAATGTCTCATCCTAGGAATTGTGACTTTCTTACATGATTATATTAAGATACAGGGTATATGTACATAGATTTGGCCACAGCTAAGTCTACTAGTATTTTGGATATTTTGAGTTatgtttgctgtttttgtttctgtcaatTCTGCTggtaaaatgcttttatttttgaaataacataTGTGCAAA-GAGGATAAATCTATGTCCATTAGTCAAGCTATGCTGGAGTTTATTTGTAGCTGAGTTTAGAGGATTCGATTCATTACAATAAACTTTTACTATTTCTTTGGTTCCA-----TGTCTTTAGATATTATGGATATGGAAATGTGCTAGAG---ATTGTCAAATGGATTAGAAACACCATAAAACAGTTTGAACAAAGACACATAATACAGTATGATGGATGTCATGAGACAAAGGTGCCTAAAGTTGCTGTGGAACACAGATCAC-GGGGATTTAACTCTG--TGAAGAAGGAGTAT----TAGAA------AAGGAAACTGCGAAGCTCAATATACCATCTGAGCTTAggacaaataaagaacaaataactTTTCAGACAC-ATGCCTTTTAAA--------TCTG------TTGCATACATATACGATATTTATATACTATACTTTGTGTTCTTACTTGAAAACCTTTCTCAATTCCCA-TTTATATTCCACAAAAAGCCTCGAAAATG---TTATATGAGAATTCTTCTAATGAGTATGAT----ACT-TAATGGAAATCA------------TTCTAGAAAATCACATATATTCTAGGAGTTTCTGATCAACTTTCA-CTGTCTTTAAAC-AGTGGATAAAGCACAGA

a score=18360
s chr3           156031705 1804 + 160039680 ATGCTTAAATTATTGAGT----AGAATTGGAATCATTTACACACAAGGAAGCCATGCTGTAGAGATGGATTTTTAAATTCAAGTCAAAATCCAATGACGTCAGTATAAGTGAGAGTATAGAAGCCCAAAGGCACATGAGACAAATCTGTAGTAAATCTGTTAGGCTC-GAGTTTTGCC-------TTCAT------------------------CAACAATGACATA-------------------------ATCTGGA----------TCAACAG------GTGTCTT-------------------------AAGGTATTTCCTCCTTGAGTTATTTTAGAAGTACCTAAGCACAATTTATAGAAGAATGGAATACTTAGCTATAAAATGAGGT-TCTAATCAAGGGCAAAGAAAGAAGTCATTCAATCAGAACTATAAACTTTTCTAATTA---------CCCCAGATAAATGCAGGAATGTTCACTGATCAGTAGTGTGCAAAGCAGTATATT---ACACAAGTTATCTTCTCCAT--AAGAAGCAAACAGGTCATAAATCTTTCCCATAAACCAAAATAATAGTGTAGTCCCTTTGCCTGACTTATTGCTGTATATTAGAGTGCTTGGGCATTTTAAAATTTTCTCAAGCTG------ATATATAAGCACAACATTTATTTTTGATAATTTCCACAAATGTGTGTTTATATTT-AAACACACGAGCTATCACAAAGTACATGCTTTTCTGTTTTACCTGATGTGACACACAA-------GTCATTTGCATAAATTGTA-ATGTTGGTTGTACTTTGGCCATTGCATGCCACATACTGTTTTGTGAAACTATGTAGAGATTAAG--ACTCCTGCATACCTTCCATTGCCTTTGATGTATGTATGGTGGTCAG--GATATTTCAGGAAATAACAAAAAGTTTCATGAAGATATCTTAGGAGAAAATGG-TCATTGAAACCATCAAACAGTAAAAATAGCATAGGTGATTCTGCAACTATGAGCCATAACAAAATCATAAACTCAAGAGTTTGAAATATATTTTATATTAATGTATTATGTATCAAAGGTAATAAGCATAAGCCATTCAATACAGAAAAAATACAAAATGATCAGAA--------TTGTTACTA-AATTTAAACATTCAGAC--GCCCCAAATTGCATATCA-AAAGTAAAAAACAAGCACAGG---CATAGAAATAAATACTTCAATATGTAAAATTATGAAAATCAAATTTAATTATCAAACCAAAGAAGCTTATAACAAATGAACAACA-CGAAGATTATGAG--------ATGAGAATC-------ATATTTCAAGAGGTT---AAGAAAATTTA-------GCTCATGGTCTATCAAGGA--------TTCTTTGTACAAACAAAATAGTTACAG-TTCTATGACTTTACTTTAAGCCTGAGGTAGGTAGACAGCATGGTGTTGTGTGGGATTTAtagagaagaggataggagagtaggggaaaggatgaggttgggctgggtaaggctgggtaagtattgtacatagagtagaagagagcagaacagagcagaacaaacaaagagaatactacaggagtagaggagtagaatTATTTAGAAATAAAGAAAAAAATCTAGAAATATACTGTTCTTTTATTCTAGCTGTAGCTGTTCTTTAATACAGTATATTTCATGTGAGGAAAAAGTAAA---CTATAAAACTGGACATTACCATTCCTAAAAATTAACTCAGAAAAAAGTTATATCTTAACTATGTGTATACATAAGCCAC--------TTTAAAATTGATGTAAAATTCAAAGta-aaattttatttcaaattaaat--aaataCATTTGAATATTTCTGCAATACAGGAAATAGt-------atatatatattaaaattaaatttaaGAAAACTGGGAAGAATTCTTTAGTGACAGTTTTGAGAGATATTGATAAGGGAGAATTTAGTCAT-AGATTCAGA
s HiC_scaffold_1 143159402 1797 + 233722169 atatttagatctttgagacagaaaaacaagagcaatgGACACATAAGGGAATACGGGAGTGAACATACACTTTTAGGTTTAAGTGTAAACCTCGTAATGTGAGTATAAAGAAGACTATAGAGTC------GAACATGAAGTCGATCTGTAGTAAATCTCGCAGACACTAAGTTTTGCCACTCCTATTGATGGCCCAGTTGCGGTGAGCCCGTTGCAAGCATGCCACATTCAACTATCAGTTGTCACTGAAAGATCTAAAGGGTTCGCAGTCACCAGTAGGCTGTGTCTTTACAGGTGGACCTGCACCCATTATAAAGGTGTGTA-TCACTGAATTGTATTAAGA-TACTAAAACACAGTTTCCAAAGAAAACACATAATT---TGTGGGACGGGGGATCCAATCAA----AATTGGACCTGTTCTTCAATCAAAATTagaatctttttaaattaaattttgtatGCTGGAGGCTTGCATGGATATTCA----TCACTCATGTGCAAAAATGTACTTTTAGGTGACAATTACATTCTCCATCCAAAATGGGAAGGAGTCATAAATCCCTTAAACAAATCAAAGTTCTGATGTCTTTTCTGTGACTGATTTATTATCGAATAGTAGAGTGCTTGGGCATATTTGGAGCTATGTAAGCTGTGTGATACAAAGAAGTG----------TTTTAACAATCGCTGTAAATATATCTTTATGTTTAAAATAGATGAACTGTTACAGAgtac-ttcctttctgttttacaGGCTATTACACACAATTTTGATGTAATTCGTCTAAACTACATTTGTTGGCTTTCTTTTGAGTATTACATATTATATTCTGATAGCTGAGAGTggataaagattaaaatattccTATGGaccaattataaattttaaaatatgtatggcCTTTAACTATTCTTTCAGGATATAACAAAGA--TACATGAATA---------GGAAATTGGTTCATTTAAAAT-TGAAGCATCAAAAATAGTAAATTTAATTCTGTAAAAGTGATCTGcaaaaggatttaaaaatcagCAGTTAAGATGTCAGTTTA---------ATTAT--------GACAACAATCATAAGCCAACCAAGTAAAAAATAGCCAAatataaccaaaaacaaaagttcATTACAGTGTTTTAAGCAACTAAATTAACAATATATTACATCTTATATGGTAAAATACAGACAGAGAATTTCTAGAAATAAA-GCTTCAGTTATTTAAAATCTACAAAACAATTCAAATCACTGAGCAAGAGAACCT-----AGAAAGAATAATATCCAGGATAATGAGGAATAAAAGTAAtaatcaaataatatattttgataaattgaaaaaaaaatttatacaaccacaaaaaaactgttagaaataaaatagttacagatagaaataaaatagttACTGATTCTAAGTTTTCA---TAATCCTGAAATAACTAG-------GACATTGT------TTTA-----------------------------------------------------TGGGTCAGTGGTAGACATATAGTGGAATAGAG-----------------AATCTAGA----------------------CATAAACCTTTATCCATAAGGtaaaa----------------------tcattttcattgtag---------------GCACATTTCATTGAAAGAAAGAATATAGTTTTACAAGAAGTGATTTAggaatgatgagaaaaaaaatcagaaaagaatga-atcagaaaaaaatct---cacaaactgcttagaaaattgaaaattgatttaaaatttaatgtataaaatttatTGGTAGTCCAATGGAAATACATTTGAATGTCT-TGGGATGTGGAAAATAACCAATGCAGtgtacatgttcaatttcagttCAAGAAGGCGTTGAAAAACTTTTTAGATACAATGGTAGAGGAGACAGA-AAAGCTGAATTTGGTCATGAGGCCCAGA

a score=30161
s chr3           156038898 928 + 160039680 TTGATTTTTCAATATCAATATTAGATTTGTTAATTTTCA------TAGATATGTGTTTATtatatatatatatatatatatatatatatatatatTATTTGAGTATAATGGATGTATAACAGCATAAATTAATAAT-ATATTTTGTAGTCATTAATTAAAAAGGTCTGAAATAAAA------GTTTGT---AATGAAAATTGAAAATTTAGCTTAATTTATATAAAATGTTGATGA-CATAATATTCTTCtaatttttata-tgtattatctaaatcataataattattctaatatttt-attCATTGTACTCCTCACAGTAAGTTAGG-CCACTAATTTTAACATCTCTTTATC-TACCAAATTCTAATGCATGTATGGAAAATA-TTGAATTCAGATTTTTTTTTAAAAAGTTGGGATTTTTTTTCTCTGTCAAAAACCCTGCCAATGCTTTATAAATAAATATAAAGGAATATAACATCTTAAATGTAACTT-ATTCTAGGTTGTATATTGTGCTTCTTGCCTTTGCCCAGAGCCATGCACATTTGGCCACGCCAATATTTAAGTTGCAGTTTACAGAAGGAATTCAGAAAATACTACTAGCAGTATGGTTGTTTTCTACAAACAAAAAATGAAGTGTGAATTTGTAAAGAATTGTGTCTTCCAAGGGGAAAGCCAAACTGTAAATAATGCAAATTGGCAGGATGATGGAATAAAATGATTCCAAAGAATATTCTGAGTTATAATTGGAAATCATATGGAGAGAGACAGGTTACTCTTCTTTATATGTTGCTGAGCTTTGACTATAAAGCTTGCCACTGATTCAGT------TATACAAAGAAAATGTGTATTACTATTACA-CCCATTAGAATTCATTATCACACATTAAAATGCATGGGGTAGCTGTTGAAGAATGTCATGTTCCGAT--TTGTAAAATGCTAACAAAATGTAAA
s HiC_scaffold_1 143174345 911 + 233722169 ttgatttt---------aaattattctttccaATTTTTACAATGCTAATTAGATTTTAActttgt-tatatacatatatatatatatacatatataatataagtAC------------------TAATTTGAGAATGATATTTAATACTCATTTAATCAGGCTGGCTGTGTTACAACAACTTATCTGTGGAAATGAAAAGTGCATGTTTG--------TGTATGTAATCTTGAGAAGTATATTAACATC--AATTATGATACtgcattataaaaattaaaat------tctggcatttttatttattggattATTCTTGGTAAATTAAAACCAATATTTCCATTATGTCTAAATCATATTCCACtgctatacatatatatagcatGCTTGAATTTAA---TACATATAAGATAAAGGTATTATTCTCTCCAACAAGAAACTATTTTGAAGCCTTAAGGGTAAATATaactaaa-ataacattttta-tgcaACTTTGTACTAGGTTATATATTGTGCTGCTTGACTTTCCCCAAAGCCGTGCACATTTGGTCACGCCAATATTTAAGTAGCAGTTTACAGAATAAACTCAGAAAATACTACTGGCAGTATGGTTGTTTTctacaaacaaaaaatgatgtgTGAATTTGTAAAGAATTGTGTCTTCCAAAAGGAAAGTAAAACTGTAAATAATGCAAATTGGCAAGGTTATAGAATATAGTGATTCCAGAGAATATTCTGAGTTATAATTGGAAATCATATGGAAGGAAACAGGTTATTCCATTTCATGTGTTGCTAAGTATTGAATATGTAACTTGCTAAGCAATCGGTCTCTACCAGAGAACATAAAAGCACTTTGACATTACATTCCCTAAGGATCCATTAGGAAACTTCAAAATATATCACGTGGCAGTTGAGGGGCAGCATTTTCTGGTGCTTTAAGGCGGTTAACAGGATACAAA

a score=29712
s chr3           156054843 1134 + 160039680 GAAATGAAGCTGATTCATTATCACAACTGTGTTAACCAAAAGAAGATCCTTCCAGAAACTTCATTCATCTTCAGTGGGAACACCTGAGCAGATTTTGAAACTATTTGAGTCTCACCACACAGAAATCCTTGGGAAGACCCCACTAAGTTAAAATGTCAGATGAGATTCCTAC-TACTCATGAGATGCCT--TTCTCTCAGCCATGCACTGGTGCATCATGGACTTCACATTTAGAAG--AGAAAATAAGGGGAGGTA-ATTTTTTTGCACCTTTCATTTGCTGTCAATTATATTTGCATGAATGTGCTGGCATTTT-GAGTCTGATACGTCATGCCTGCACTTGccag-tgagtgaactgctcccacagtgcgaattagagcttgagagacg--tctc--ctctctgtccattgggacgt-catttagcacattgaagtggcagtttattaaatagttcccctgtggacgggaagaAAGAATATTTCTCCTGAACATCACTGGCTGTTTCTT-----CTGAGTAATGATTTGATAAGTGCTGGCTCATTCTCCTTACTTCTGCTAAATGAATCAACTTTTCATAAAAAACTTACAGTGAGTATTTTCTATAAATTGTAATCAATTATGTAAACTCTAAAAACTAATTACTTT-AGGTCATTTACATTATTTATTGTGCAGTTAATTAGGATACTAAGTCAATATTGAGTAATTTATTACTTTTCAAGAAATA--ATCTAGGAATTCATGAAAATTTTAGATCAATATTAAATTGCAATAGCA----CTCATTCCAAAACGTCTAAAGTAATTTACACTTTCATTTCAAATATGACATATGAAGTCATCATTAACTGATATTATTGGAGCAATCCACTGTTAGCTGAAACTAATTTATTAATTACACTAGAATAAGTAATAAATTTAGTGACAAGTTACCCATTGCTTTATGTTTTAGACTGATTACTAGCAT-CATATTTAATT--TTAACATTGTATCCATCCATACTATATAGGTAAA---CTTACAAAATTTAGTATGTCATTTATGCAAGCCAATATCACATTAACTGATA-TTAATGACAGAAGATGTTGAATCTGTAG--------TGAATTCAGAGAAGAAACATTTTTAAATAACAAGAAAATTTTAATTTCTATGTGAAAATAAA
s HiC_scaffold_1 143185840 1118 + 233722169 GAAATGA--TTTATACAATATCAAAACTATGCAAAATGACAAAGACTT-----GGAGAGTGAATTTGTCTGAAGTGCCAACAActgaactgatttttttaa-atgtgagatTTATTGtgcaataaaatttgaaaagagcTG--TTAGTTATAATGTCATATGAGGTCCCTGTATCCTCATTAGGTGTCTGCTTTGTGAAATCATACACAAGTGAATCAAGGTCCagaaacttagaaataaaaaaagaaaaaaaaatgtatccttTTGCAGCTTTCACATGCTATCAGTTATATTTGCATGAATCTGCTGAAATTTCAGAATATGATGCATCAGGTCAGCACTTGCCAGGTGAGTAAACTGCTCCCTCTGTGCAAATTCGCATTTTAGGAGCAAATCTCAACTTTCACTCCACTGGAGCCCGCACTTAGCACACTGAAGTGACGGTTTATTAAATA-----------------AGAGGAGAACATTTCTGCTAAACTTCATAGATGTTTTCCTGGGGCCAGAGGAATCACATCCTAAGATTTGGCTTGTTTTA--GACTTCTTCCAATTAGATCAAGTTAGCATAGAAAACTCACAGTCATTGTTGTCTATAAATTGGAACTAATTATGCAAACTGTGGGAAGTAATTACTTTAagatcttttaaattatttattgtatAGTTAATTAGAATACTTAGTCAATACTGAGCAATTAATTAGCTTTTGAAAAAGAGGATTGAAGAATTCATGAAAATTTTGGATTAATATTGGATTACATTGGCaacattttaatagaaaaataataaatcatttttcaGTTGTACTTAAAATATGGCACATGCAATTCTTA-CAAAGAATATTCTTAGAATAAG-CATTGTCAGTTAGAATAAATTtactaattataataaaat-----accaaCTTTCTGGCAAAGTGTCCAGTGTCCAGTATTTTAATTTAAGCAAGACAAGATATATTTAATTGCTTAACACAACACACATGTATACTATACATTTATAGGGCATA-AAGGTTTTACAACTAATATAAGTAGACTTGTatcacataaaatattatttaataatagaa-atattGGCTGAGTAGATAGAAAAGGAGTCCAAAGAAGAAA---TTTTGTGT---------------ATGGCTATGGGAAAATAAA

a score=53567
s chr3           156068892 2178 + 160039680 AATGGAATGAAAGTAGAATATGACTATTAGGATGAAATACATAGAAAACACCCACCCTGAGAAATTTGCTGATTTGTAGATACACTTTGCAAGGGATGAAGGTGGCATTACATC-CACAGATGGTTGAAA-AGCATGAGAGGAGAGGCTTGTAAAGGTTATTGATTATTGGTTATTGTTCTGTATTTTCACCA-TGAGATTCTATATGGAAGTATCCCGTCAAACACATGAGTTTTCTTAGACTTGTTTACTTTCCCTGAGTTTCACTTTTCCAAACTTCATACAGAAATAACAGAAAATAA------TGACTTTTATATCTTATT----------------TCTTAAATTAATAAGAACATAATATAAATAGTATCTGTGATGAAAGATACCTGGCTATTCCCTAAATAATCTACTATTTACTTTGTTCTTTCCACATGAGAAAACACAGAATCTGGTGCTGTAATACCCAGA------GCTTTTCCCTCCCTGGCTCCCATTTCTGGGTGAATCTACTTAAGACAAA--GTCTCTCTGGGGCTTTAGCAT-CTGCTTTCATAGT----ATGATCAAAGGTAAAATCGCCTTTATAAGAAATGACTGAAACAAAAGACAATGTGAAAATCACTTGGTAAAAGCTAATTGCACACTGTAGAGAGCACTGTTTTTCATCTCCTCAGATGAGATGGCTATGTTACACAAAAATTAGTAGAGTCTTGAT------------------------GACTGTGTACACACGCCTCTGCTGTCTTTATTCTT-TTACCTCAGCCA-------------------------------TCCCTGAAGATCCTCTAGAACTGAGTCATGGCTTTAGTTCCTGAAA-----------TGTTTGCAGTGTGAGCTGA-----AATGG---TTTGTGCCTCTGTACAACAGACTAAGGCACACACTTTCAGTTCGCTGGATCACATAGAAATGTCTGAACTATGTTTGGACAATCTTCTTAATTTGAAGATGGAAAGACCTCAGTTTGGGAAAGAAAAGTTCAAACCCTGTGAAAACCACTCTGCACATGACCTTTGTGTTGTGTTTCCACAGGAAAGGCAGTGAATCCTTAGCAGAGCAGGGACTGGCTCCTTCTGAAGCAGGCTGGCAGAGAAGTAATCACCAAAGTTCGTACAAATTATTGAGTGCTTCATAATGCAACGATAAAATTCTGCGAACCTATTTGAGGTAATTCTAAAGCAGGAACCACGTGCGACCCAACAGGAGCTGTGATAACAGCTTCACTTGGCTAATGTGCTGTTTATGTATACAAAGTGCTTTGCAAATGGTAAGTAGGAAAGTCACCAGCACAGGAGTTTCTCAAAGCATCTTAGTTTTCTAAAGCTATACTTATCTGAAACTGTGAC--AGAGCAGCGGGAGACACATGACAATGAAGCCCCTCACAAAACAGA-GAAGTCGCAGCCAAATGTTAAAATAGAGAGATGGAATTTCTAAGGTAAAAAGAGGAAAAAATTGTACTGGGAAAAGGGAATACAGTAGTTTTATAGAGATTTGGAAGTTTAAATTATTCAAAGCTGGTACAATCCCAAGGAAAGCACGTGCCTACAGACCATCTGTTTG-CTCCAAAGAGGAGTCTTTGGAGAATT-ATTCCAGCTGCCAGAGATTCAGGAAAGGGAACCAATCTCCAGTTTATCCGAATCATTACTTGCAAACAGGATCTCAAGAACAGCCTATAG--TTGGGCTGTCTGGCTTGGTCTCCATGGAGAGAGATTCCTTGGAGAATTCACTAGCTGCGGAAAAGTACAGGTATGA-AATACAAGCTACAGCCTGCGAAGT-ATTTTCTGGCTGAAAGAAATGAGAAGGCTCTAATGGCGGAAAGCATCTTGTAAGAAAAATCACCTATGTTTCAATAA----------CGTTTAAAGTAGATCTTCAGTAGTTTCCAGAGGTGAACAGTCTTCTGGTT---GGACT-----ACACTACGTTTGTGAAGCCAATCTTAGGCCACACATTTCCATTTCT---CCTGTCTACTAAAATGTAGAAGCTAATATTCATTGGTCAACTTCGATGCTGGAAAATT------------AGTTTCAAAAACCAAGGCTTCtatattttaatttcaaaaaaatattattaGTGCCACCAGCTAGGGCAATAATGGCCACATCTTCATGTTTAGCCTTTACTATCACAATGCACC-TCAAACACATGGTCATTTTTTTTCCTGTAAGC-----TAAAAAACTGTTCATCCAACCTTGTGATACCAAGGACTTCAAAATAT-AATGTAAGAAGTGCATAT
s HiC_scaffold_1 143196455 2262 + 233722169 AATGGAATGAAGTGAGAAAGAGTCAATTTGGATAGGATACCTGAAAAACTCCCTGACAGTGAA-CCTGCTGAAATATGGAATTATCTCTCAAGAGAAGTGGTAGAAACCACATCATTTGAATGGTtgaaatcaaaagagacaaaacacTGCTGAAAGTTGTTTATT--TGTTGATTGT---GCATAGCAACCCCTCAGGTCCCTTGGGGAAGCGTTTTATCACCTAGCTGAGATTTCTGAGGCTCCCTT-CATTTGCTGAGTTTCAGGGTTTCAAGCTTTGtggacaaataagaaaaaaaaaaaaccatgagtttcatgttttattaagtgtatagctgctttcttaaattaaaaag-------------tgTTATGCAACACAAATTATGTTTGATTATTCTAGAAACAATATGCTGCGTATTGTGTTCTA-CCTTATGTGAAAAAGTGGGATGTG-TACT-TAATACCTAGCATTTATGCTTTTGCTTCCATGA-----ATGTCTCTGTGCGTGCACGTAAGACCTGTCATCTCGCTGAGGTTT--GCATTccacatttataaatacagtgATGAAAGGTGATATGATCTTTATAAAAgttgaatgaaa-acaaaacaatacaaacactATTTAGTAAAGACTAATTATATATTGTACATGGCACTGTTTT-CATCCTCACAGATGAGATTATCTCCTCATTCTAAATTGATTagatgtttgcttttctttccgATAACGAGGAAGGCAATTGCTCATACAGCATTCTCTCATTGTCATTCTTGCTGTCTTAACCAAAGTAAAGGAAGAAGATAATGACAATTAAACTTAGTGAGCCTGATCTAGAATTAAATCATTACATCACTCACTGGAAATTTAGAGCTTTTCTCACAGAGCTAGGTAACTCTAGATGGATGTGCGTGGATGAgtata-catacacaaacacatatttACAAACTACCAGATCTCACACAAAATTTTGGAGAA-----GGCTAGTCTTAT-GATTTAAAGATTAGAAAACCTCCGACTTGGGTAGAGAAGTGTAAATCCACT-AGCATTGTTGTAAAGATTGCCTATTCATCATATACTACCTGAAGCAAAAGTGATTCTTCAATTGAGATAGGTTTGGCCTGTTTTCAAACAAAATGGCAAGAAAGTATTCT---AAGTCCATGCATATTATTGAGTACCTCAGAATGCAACCATAAAG--CTGCAAACCTATTTGTGGTAATTGGAAAGCAAGAGCCAAGTGCAGACCAACAGAAACTATGAGAACAGCATCATTTGGCTAATGTGCTGTTTATGTATACAAAATGCTTTGCAAATGGTAAA-GGGAAAATCACAAGCAGAATAGTTTCTAAAAGTATCTTAGTTTTCTAAAGCTATACTTATCTAAAATTGTAACAAAGAGCAGCAGGCGCTGTGTGACAATGAAGCCGGGTACAAAATGAACGAAGTTTCAGCCAAATGTCAAAATACAAGGAAGGAATGtctgaggc-aaaagaaaaaaaaattgtattgggAAATGGGAATACAGTAGTTTTATAGAGATTTGGAACTTTAAATTATTCAGAACTGGTACAATCAAAACTAAAACATGTGCATGTGTACCATCTGCTTGCCTCCAAAGAGGAGTCTTTGGAGAATTAATTTCAGCTGCCAGAGTTACAGGAAAGGAAACTGATCTCTAGTTTATCCGAATCATTACTTGAAAACAGGAACTCAAGAACAGAGAAGAGACTTGGACCGTCTGCCTGTGTCTCTATGGAGAGAT-TTCCTTAGAGATTTCGGCAGCTGCAGAAAAATATAGGTAGAATGAAAGGAGGTGTAGACTGCAAAGTCAAATTCACACTGACAG-AGTGCTAAGTGTTT-CTGGCTTAAAAGATGCTTCAAGGCTAGTTTTTGATACTTGAATAGTGACTTTTACCATCTTGCGAATATCTT------TTTCATGAGGTggataaagtttttattttaggaatgtttaatctcatttttcctaagtcattatt-------ttatttatttttcttaatctgCTAACAAGAAAGTAGAACTTGACATTCTTGGACTCCATTAAAAAGTGGAGCATCAGTATACCAGGGAGTTATAAAGACCCACGTAACTgacc-----ttttaaaataatactaatatt----ttATCTGTAACACTGAGGACTATATCTACATAGGTAGCCTTTGCT-TTACATTATACTAGTGGAAAAATAGTAA-TTCTGTTCCTATAAGTAAGTGCAAAAAA----TCACATTATATTGGGATGCTAaggactttaaaatttaaatataagtaTTAAACAT

a score=40754
s chr3           156072169 2520 + 160039680 GATGAATGTCAAATCTTCACAAGAGAACCCTACCACACTTGGGCGACCCTATGCACTTTGCATAGGTA-AAATCATAAAGATGTGTAAGACTATGAACACCCACCAAGATGACACAGCTGAGAGGATTTTTCAAGAGGCCTAG----GGACTCCT-AGAGTCATGGCAGCGTTTATATGTGAGCTTGCAAAATATGCCCATGAAAACTTTCTAATTCACTTAACAGTGCATAATGAGAACA-GTCCCTACCCATATTGCACAGTGCATTGTTCAAACCTACTCCA---TGCACAGGATCTTGTCA-------AGCAAGCAATGAATTTGTATCAAA-TTGGAATCATATGGTCTAAAAAAAAAAACAAACAAACAAAAAAACCATATATTTACCTTACTCTGTGACCCAGTAAGAGTCCTAGTTCCTGTGTGATGAGAGGAAGGCAAAGCA-----AGCATGATAATGCATGCCCCTGGGATAGTGAGACCATCCAGG-TAAGGGATTTGTTTGTAAGCTTGGTGAAATAATATCAGTGCTGGTTGCTACAGATTCACTCATCCACATAT-ACAGAAGTAATGGCTAGAAAATGGAAAACACATAGAATAAAATTTAAAAAGAAACTGTCACACTCCATTAATGATTTTCTTGGAAGAAGGATTAAAATAAGGTATCACACGAGTAATAATCTGTTTTCTAGAAATCATTGTGTCAAACAAGTT--TCAACAAAAG--TTGGTTTTATCACCTCAATGTAAAAATTCACAACTCAAAAATTTGATGTACCTACAATAAGCTTAGCAGCCATCATGGTGCCAAGCACAACCAATAAAGTACAGAATTTGTATTGTTTATCTAAGTATTTATTTATTTTTATGTGTTTTGCCTgcatatgtatatgtaagttatatgtatagtatatattatatgtgcattatatacattttatatgtatattatatgtatatgcatgtacatgcagac--actcacatctgtgtgtgagagagcacacgtgagcctgtgcaagtctcaggtttggtgccaataaagtccacaaagggatatcccattttttggaaactgtattaacagtcagttgtcagtcaccatgtaggtgatatgaatAAGT--AAGTGTTTTTAACCCCTGAACGATCTTCCCATTGACTAAAGAGAGAATTCTTAAAAATCCTTTCATCCATCTCCAGAACTATAATGTATAAGTTTTATATTATAGAAAGTAA-----TCAGAAGAAAATGT-TTCGTGCTTCCAGTCTATAGCTACT-------------TCCtataattattatttattttttaCTTCAGATGGAACAAGCCGGCTTTC-CCATTGGTGAATGTCCACTTCTGGCTGCCACCCACAGAAGGAAATTGTGATGCAGGAACTTCAAATCTAGCAAAAGAAATGTG-TTATAATATAAGCTTGATGTAAAAGGAGTTCATTTGGCAACAACGAAAACAT-ACACTGGATGGAAAAAGGGCATCCTGAA---ATATGGAAATTCTGCTTCTGCCTCAGTACTTTTAAAATGCATGCTACTTCTACA--AACCACAAATACAGTAACTCAGA--CAATAGGTCTCAATTATCTTAAA------CCACTGAGGAAACTTGCAAAAAC-----TTGTTTCTTTCAAGTTAAGTAAAATTCTGTTTAGTTTTCTAAGGA-CTTTCCAGTTCTACAGAAATATTAACATGTAGCATTTGCTCTCATTAGGAGCATTAGATAAATGGCAACTTAGTGTTGGAAGAAAAGCCTTTTCAGCTGAGCTGGATTCAAGATGCCCTACTTAGTTATGTTAAAGGGAATCAGAAATCAATCAGCCCTCTATTAGGGCACAGCTGTTTTTTGAAATGTTTCTTTGA-TTTTCAAGAATCTATATTTTAAAGAGTTCTTATTGAGCATAATGGTGAGCCTAGATGTTGAGAGAAAAATAGTTTAAGTAAGCTGACTGCCACAGAAGAAAAATGAGGAATATTGAGAAAGTGGTGGTTTCCTTGGTCTGGTTAGGGCCT---AAAGAGTCTTTTCCTCCTCTGGAGTCTTGCCAAGGAATGATTGTATCTTGATAATTTACACATCCAAG-ACAATTAGAAAACACCAAAGAAAGTCAGTCTGATCTGCTGCCCTCAAAATCTCAG-ACCTGTAGAAAATTC--TTATCTGTGCCTATCTTCCTGAGTCATTAGCACAATAACAGAATTAATTTACAGAGTGTAATGACACATTAACAGGCTTCAAGCTAGCATTAAATGTCATCTTATGACCACTGTGTTTAACCTAGTAGACCTTGTAGCACGGAAGCAAAGGTTTCTGTCACTTGTGACTGACATA----TAGACTATTTCTTGCTGGGCCAGTGCGAACTGGTTGATGTGCTGACATTAGAGCATACGTTTAAATTTTTATTTC-TCTCAACCAGTCGAGGAGAGCATCTACATGGATGTCGGGACACATGGTGTAATTAGAGGGCTCTGGGCTATGCATGCATATGAAACTGTTAGACCCTTGATATTTGTTCAAAGAATACAGGACTGAAAATCAGAGTGAATGCTCCAGTTT
s HiC_scaffold_1 143200210 2327 + 233722169 gataaatccccagcccctggaagaaATTTTTTTGACACTCTTCTAACACTATTCATCATGCTTGAGTACAAATGGGGAAGAAATGCAAAAACGTAAAGCATCAACAA-ATACTAAAGTAGAAAGGATTGCT-ATAAAACGTAGAACTGTACTCCTGAGGGAAACAGTAAGATCTGTGTGTGGAGAAGTAATGTATTAATGCCAAGTTTTTCTGATTCACTTGATTTAACAGAACAAAAATACGTGGGTACCAATGTTTTCTAGTATTCTGCACAAGCCAGGTCTCAATTATGCAGGAGTTTTTCAGAAATTCAATAATCAACTAATTAGCATCAAAACTATGATCTGATGGCcgataaagaaa---------------------tacatttatttaac-cAGTGACACGAAAAGAAT---AAATCTTTtgagaagagagaaatgaaaagcatAGTAATCATGAAATTTCATGCTGATA--ATAACAGGGAGATGTGGGCTAAGGACTTCGTATATGAGGTGACTTAAAAACTATCTATTC----------AACTCCATGCacttacagatgaaaaaattaaAGGCTAGTGAGTCATGAACACACTGAATAG--TTTA-------------------TAGTTGTGATCTCT-----------GTTACAACA------TATTTGAATTACAAGATCCTTGCTTAAGATTA------CAAAAAAAATGATTTACAGAAGCATTCGTTATG------------AGACATTTTAAACGAAAATACTTGA-------------------AAAGACTTTACTGTGCTAAGCTGAAATTATATcacacaaaatt------------ataaaaatttaaatacacttaTGTGTGTGGGAGGT-----TATATTTAAATACTGTGTCAACTGTA----ACCAGTGC----TATACAAACTA--------------------------ACTTGAAAACTTGCCTTCCTCAATAGGCG-------------GTTTCTCTGTAAATCTCAGT----ATGCAGATTCAATATTCGAAAGAATTAGGCTTGCTATG---ACTATCTTAAAG--CAATTGCAA---------TACgtaatat-aataatttaaaaggatTTAGGCCCATGAATGATTTACATATCCTCAAAA---------CTTAAAA-------------TCTCATGAA-TATTGTGAATAA-------ATTGGGGAAAGTAAGTATACCAAAAGGAAATCTATCCCTATGCCTAGCCCACAGCTACTCAACTTTCGTTTATCCCAAAATtctaaatacaattttattttggaatGCACGAACTAGTTTTTTCCATTGGTGAATGTTCCACTCCCACTCCCACCTGTGTGTGAAAATGGTTTCACAGAGA-TTCAAACGCAGCAAAATCA-TGTGATTGTAATACAA-----ATGTGAATGTAAAGTAGCTGGCTATAAGCAAAAAATCAAACCAGATGGGACAATG--ATCTTTAATTAATATGACAACTCCTCTG-GGCCTTCATTCTCTTAAAAGGAGAGTTGCTCCTACACAAGTCACAAGAATGGTAAATCAGAGACAATACTTTCGAACCATCTTAAAAATGCTCTACTGA----ATTTtccagaacaatttttttttctttaaagtcaagttataatttttttttttttctaatgctcTTTTCCATTTTACAAAAGTATTAACGTGTAACGTTTGCTTTCATTACAGCCATTAGATAAATGCCAGCTTAGTGCTAGGAGAAACACATTTTTAGCTGAAAATGAACCAAATTGTTCTAGTTAGTTTTGTTAAAGAGAACCAGAAATTAATCAGTCTACTTTTAGAGTACAGCTACTTTATGaaatgtttctttgatttttcaagaGTTTATATCTTAAGGGGTTTTTACTAAGCATACCAGTGAGcccaaaagtagagaaaaaagcAGTTTAAGCAAGCTGACATTCCCAGCAGAACAAAAA------------------CAGTTTCCTCTTTCTGGTTATGACCTTTGAACAACTCTTTTCTCACTTCCAGATCTACCAAATGAAAGTGCAAACCTGGAGGA-------ATCAAAGTACAGTGAGGGAACGCAA---------AGTTTGATTTGTTGCCTTCTAAAGTTCAGAACCTGCACAAACTTTTGTCACTTTTGTC---ACTTCCGAGTGGTTACTACAATAACAAAATTCATTAGCTGATTGTAATGACATAGTAATAGTCTTTGAGCCAACCATAAATACCTTTTTGAAAGCACTGTGTTTAACTTAATAGCCCTTTTAGATACAAGGCAAAGGTTTGTGTCATCCTTAACTGACACACACTTACATTGTCTCTTGCTGAG-CGCTGAGAGCAGGTTAATGCATTGCCACAATGGTGTATTTTCCAGCTCCCTCCCCATCTCAAACAGTGGAAGATAGAGTTTGCATCAATGTCATGACACACAGTATAATTAGAGGGTTCTGGGCCATGAATGCATATCAAGCTGTTAGACCCCTGATATTTGCTTAAACAGTA-GGGATACTAAAGCAGAACCGATGCCCTAGTTT

a score=3959
s chr3           156075321 90 + 160039680 AAGCTACACTTTTTAA----CAGTTCATTATCAGTATCATGGTCAGATGCTAAAGAGAGTTCATTGCAACCTCCCTTCCTTCTGATAACCGGAG
s HiC_scaffold_1 143202565 94 + 233722169 AAGCTGGCTTTTGTAATTGTCAGTTCAATATTAGTAGCAGGGTCAGAAACTGTAAAGAGTTCATTACAGATTTCTTTCCTCTTAATAGCCTGAG

a score=17749
s chr3           156084603 744 + 160039680 GTGTGAGTTCTGGAAAAACGTACTATTACCAGAATGC-AGGGGCCAAC-----AGTCAAGAATCG--ATGTCG--AGGGATGTGCCTGTCCTGGTGTCATAGATCAGTAATCTATAGCAGGCAGATTTAATTAGAAAG-AATAGTCAAAAGTCTTCAGGTC-CTTTTCTGAATCATTCTACACCCATTTAAATGCCAAGACTGCAATGAAATCAGATGTGAGCTCATGCCAGGGACAGAGTCAGGAGCTCTGTGCTTTATTTCCCAGGAAACGGT---------CATTAGATAGTCCAAAGAGGTCAGATAGACATCACACATGTTTGAGTCCTTGGTATCTAAATCATCAATGTAATGGACTTCTCAGAGTATTCATTATTGATCTAGTTTTTTACAGATTAGTCTTTTAGGATTAAGGCACTAAGCATCATATTCAAATATACTAGATTGATATTGTTTGGTGGACAACATCTCAAAAGCTCTTTAATGTCTTTATATCTATCTGATAACTTTATGAATTAGTCCAATGATGAAAACTCTAAACATCAGGTTTGGCAACATGGTGTCACCACCTGGATTTCTAAAAAGAATTGTCATCACAGTGCATGTTAGGAATGCAAAGCAGTTTCCATCAAACATGCCTA--GAGTTTAAAATT--CTCTACTCGCTTTTCCC------------CATTTCTTTAGTATAAGGTATCCTACCACCTTAAGTACTTCCTCTAGAATATATTAATTGTCCAC---AGAAAATGTGGGTATTTAAAAAAAT
s HiC_scaffold_1 143211256 764 + 233722169 GTGTGATCTTTTGGAAAACAGCATATTAGCAAGATGTTAGGGACCAATTAAATGGTCAGAATTCATAATATTGGAAGGACTAAGCTTGTCCCTATTTCATAGATCACTAATCCATGTCAGGCAGGTTTAATTAGAGAGGAAGAGTCAAATGATTTCTCATTGCCGTTCTACATCATTTTAACTACTTTTAAATGTCCAGACTGTAATAAAATCAGGTTTAA-CCAATGCTAGACACAGTCTCATGTGCCCTTTGCTT-ATTTCCCAGGGAAATATGAGTGATCTCCTTAGCTACTCCTGGCGTGACAGATCAATATCACACATATTTAAGCCTTACACTACTAAATTCACAGCATAATTAGCCTCTCAGATTATACATTATTAAACTTCATTTTCACTGATTGTCTTTTTAAGATTAAaggattaaa---tatatttaaatatagtaGCTTAATACTACTTGCTGGCTAACATTTTAAGAACTATTTAATACCTTTATGTTTACCTACAGAACATGCTAGGAAGGCAGTTAGATAAAACTTTAGGTAG----------AGAAGGGTGAAAAGACTTGGAATCTTAAAATGAATTGTAGTTACAATATATAC--ACAATGCTGATGTCATTccataaaaaaaatctatgaaatttgaagtctgttcttttcctttatctCAAATGTCTCTATCAAGTCTTAAAAATCAAGTACACTATCATCT---AGACTTTTATCAGATCTTATTAATgtttaactgaaaaaaatgtgtgtttttaatAAAGT

a score=52912
s chr3           156085758 1882 + 160039680 AAAGAAAATTAATATTTACTCTTTT-TTGTCAT-ACAAAGATTAGATTATAGGTTTACTAATATATTTGT--TTGTTTTAGAAAGAGAAAATTATTTTGGTCCAATTTTCATGACATGTAAGAGATGGATAAAATCAGATT-CTTATTTTGCCAGTGTTGTATTTGAGGAATGTAATATTAGAAATCCACTGTAATGTCTTAAACAATCATGCTAAATATGCCAAGGGACTTTTTAATGCAATACACTGATGAAAGAAGGGTATTGAATTTATTCAGCCGTGAACAAGTCTTTGATTATCATACACCTCAACTGCTCTGTAGGTGTTGACCGTAAGAAAAGTCAAAAATAGAAAATGAAGTGTGATTATTTCTTGATGAATCAAAATTACTTTAATAGAAATTGAATGGAGAAATTTTCTATTAATAGTTAGAATCAAGCTTCCAGTTTTTCTCTCTGAGTAGCATTCAATAAATGTTCTTGAATTATGATGACATTTTCACAAAGGT-TGAAAGGAAGCATAAGAAAGAGGGATGGCTCCCTCTGCATGTTTGTGCCATCCACAGGAGTGTAAATTGTATAGCATGAAGGTTCATAAATAACTCTGCCAATTATGCTTCGG----AAAGCGATGTCTACAGTTGCATACCTGGGATTTGTCAATACGTTAAGTGTGAAGAGGTAGAAAGTGataaattataagattttaaaattattttGAAGCTGAAGCTTAACAAAGGATTGCTG-AAAAGCTTAGTTAAAAGGGAGA-AACATATAATTCAGCCACGTAAGACATGATTATGCTATGTTCCTGTTTTTGTCAGTAAGTGGAGAAATCTCGGGAATTTTAGAAAGCAGTGGTAATTACAGTGTCACCTCATTCTGGCAGCCCTGGGACATTCACTTTTGA----GTTTCTCAGACAGACAGAGAAATCTATAGTGCCAGAATTGAGCGTCAGGGGAACAAGCCCATCCCGTTCCTATACCATTTGCACAGGTACCGTTCTTATTTATAGA-GGAATGCTACAT--CTACGTTTTCTGCCTCGTCTTCACAGTT-----ATTTCACACTTA-GTTTTGTGAGTTGTTGT-CTTGATGAAGCGTGGAAATTTCTCAGGACTCCTGAGGAAGTGTGAAATTGAGTTTGAGATGTTGAACACTGTTAATTTATCAGAATTAAACATTAAAGGTGAGATGACACCGTGGAGGCAAAGAG-----------AAGAAGGAGGTGGTAG----AGAGTC-ATCAGGCCTTAGG------------CATCTCATCCTCAAGTGGGAATGGATTTCTCAGAATGATTCAAACATGGAAACAAAGGCAAGCAATAAAATCAAGAGTGTATGCCTGCAGGAAGTTTACAATCTAATTACAGAATATTATT-----------------CTTACACATAAGCTAATGGCGAATAAG--AACCA---CAGGATAGTGTGGGTTTCAGCTTTTCATTCTTTAAGCCTGATTAAGTCAGTTACACATTTCTGAGCTCATTAGTTTGTAGTAGT-----AAATCATTGCTCAG------------------------------TCTCTCTGTTTC-----------------------------ACACAAATTAATTATATTGATGTGAATTCTAGTATATTAT---------AGCATATATATTTAATTTGTCAAATATTTCTCTTAACATTATAACAAATAGACTTCATTAAGTTAATTATTT---AATAATGGCTTTACAGGTTTAATATAGCACCAATACATAACTCTCTGTGGAGTAGGAAGGACATTATAC----TCTCATTATAT-CTCCATTGCTAACAGAAATATCATAT-AATATCCAG--CTTAATGAAATTTTGCTAAATATTAACTTTCCTCCGATTTCTTCTGATTGTATTTGTTCCCATGAATTTTTTTTC---ATTTCTTACTCCAAATGCAAAAACACATTGCTAGTAACTT-TTAGTTTACATGGAAACTTGAAGATAAAAGATAATAGTATG
s HiC_scaffold_1 143224289 1979 + 233722169 aaagaaaattgat-tttACTTTTCTGCTGGCATTATCAAAATAAGATTacatttttgttaatatatttgtgtttgtttttggaa-agaaaattattttcattcaattTTCTTGTCATATACGAGATGGATAGATGCAGTTTTCTCACTTCATGTATAttgtatttgaaatttgtaaTACCAGAAATCCAGTGTGATGTCTAAAACAAGCAAACTAAATATGCCAGGGGACATTTTAATATGCTGAACTGATAGAACGAGTATATTGAATTTATTCAACCATGAACAAGACTTTGATTATCATACAACTCAACTGTTCTCTACATAGTGACCATAAGGAGATTCAGaagtagaaaatgaaatgtgATTATTTCTTGATGAACTGAAATTACTTTAACAGATATTGAATGGGAAAATTG--TACTAATAATCAGAATCAAGCTTTCAG-TTTTATCTTTGAAGAGTATTCAATAAATGCACCTTAACTATG-TAGCATTCTTATGCGTATCTCCAAAGTAGCAC---AAAGTGGAATTATTC-----ATCTATTTGTTCCATTAATGCAAGCATGAATTATATAGCAGAAAAACTCATAAATAACCATGCCAATTATGCTTTTGTTTAAAAACTGTATCTACAGTTGCATGCCTAGTATTTGTCAATAAGGTAAGTGTAAAGATTTAGAAAGtgaaaaattat--gattttaaaattactttgaagCCAACGCTTAACAAAAGATTGCTGAAAAAGCTTAGTTAAAGGAGAAACAACATATAATTCAACTAGATAAGACATGATTACACCATGCTTAAACCATTGTCAGTGCATAGGAAAATACAGGGAAGTTAAAAAGGCC-TGATAATTATAGTGTCACCGTGTTTCAGCAGCCCTGTAAAGTCATCTTCCTACTTCGCTTTTCAGACAGATGCACAGTTC--TAGTGCTGGAATGGAACGACTG----------TCA--CTGCTCATACACCGTGCACAGAGGGG-------TTTTTACAGGTGGGTTATCACGTGCTCTCGTTTTCGTCTTC--CTTCACAGTTACATAATATCACATGCACATTTTGTGAGTAGCTATAAATGATGAAGCATGAAAGTTTCACAGTGCTCACTATGAGGTGTGAAATCAACCTTGAGATGGTGAACATTGTTAATTTATTTGTATCATGGA-TAAAGGTAGGTCACCACAATTAAGATAAAGATGCATATCAAACAAGCGGAATTTGGTGGAAACAGACTCAATCAAGCCTCATGGACACTCATCCACCTCTTATCGTCATATATACAAAACTTTTCTgtaataaatcaaacacatgagTGGAAATAAGCAATGCAACTAAGAACAGAACCCTACAGGAAGTCAACAGTCTAATTAT--AATATTCTTCAATATATCCATGGACCCTACCTTGTAAACTGAAGAGAAAGAAGTTATCTAAATCAGGAAAACG-----TTTAACTCTTCTCCTCTCAAACTCTGGTGAATTATTTTAACCTGTCAGTGATAATTGGTTAATActattgggaaaaaatctttctctgtctgtctctgtctctgtctctgtctctgtctctctctgtttctctctctctctctctctcaaatattattaacatatatttattatgttaATACTAATTACAACATACTGTGTTTTACTAAGTATACATATATTAACTACATTATTTGAGTTTGAGAATTAGCTAAAAAAGACTTTTTCATCCCACTCAATTTGCCATAGTGTTTTAGCAAGTTGGATAGATGACTATAGTTTAACTGTCCAC--------AAGAGCTTTATATGGGGTACCATtgtatgtttcctttttaaaaactattttggcTGAATATCTAGATTTTAATTAACATCtgataaatact-atttttttctgtcatcccctgattacatatattttcttaaatatgttttctaaaattttaaatttaaatgt-acaaTTCACTGTTTGTAGTTTCCTAGTTTAAA---------GGAGGTATAAGATAATAATTTG

a score=5138
s chr3           156089930 218 + 160039680 TGaactctga---------gggagcgtggcaatttatgtcttaataagc-----------TGTGGTCCCTCACTGACAGAGATTAATGATGGAAACACCATAGAAACTCAGAGGTCACCTGTGGAATGCAGTTTGCCAACTGTCGGTTGTCAAAGTCCATCAGTCAAACATATTTTTAGCAGATGCTTGAAACTGAACTTTCAAAAATGCAGGTATACTTGAAAATTATTCTGATCTA
s HiC_scaffold_1 143228191 231 + 233722169 TGGACTCCGAATGAGGAAGGGGGTCACAGCAGTCTGCGTTCCCACGAGCCCTCCCTGCACTTTGGTTGCATATGGATAGAGAGAACAGATA-ACACAC------AGCACAGGGGTCACCAAGGAAGCACAAGTCACAGACTGACAGTTGTCAGTGTCCAACCATCAAACATACTCTTGGCAAATACGCAAAATGACACTTTCAATAATGCAGACCTCCTCAGAAATGGCAGTGATCTA

a score=36546
s chr3           156094872 1062 + 160039680 AACGCAGGATCCCAAGAGAGCTGAAGCAGCATCTGACTTAAA----TGAAAA-TCAGAATGAGCTTTTGCAGTGAATAGCAAACAGAAA---------------------GGAGG-------GATAATGGAAATGTTGGAGGGCTTTCTGTGATAGTTTCTGCCAGGGAAGGTTACAGCTGTGAGTGTACATTAAGGAAGAAAGCGTTCAGTATTTATGATTTGCAATTTTAACTTGTGTTTAAAGTGGTGCGGCAGGATTCATGGGGGATTTAATGTTCTAGGAAATCTATTTGGTCAGTTCTGTACAATTTTATGACCTTTCATTAGGACTTGAAGGTTTAACTGCACAAAGTGTGCAGAGAATGTGAAACATGCCAGTCTGTATAGCTTGTCTCTCTCAGAATGCCCCTAATGCCACAGTTGAAAGAGGCCATTAAAGGAAC--TGTATTTTAAATGGGCTGACATCAGAGGCGATAAATACAATATTCATCAAAGGACTTCAGAGGACAAAGCTCTAAATGAAAAATTCAGAGAAATGTTTATGCTTCAAATATTTAAACTCTGTAGAAACAAAGAAAATATACTTAAAATGCATAGTGTGTA-TCTAACATCAAAACCAG---TTTTTCTAGTGAAGAATACTTTA---TTTCCCTATTAGTTTTAAATTAACTAAATTCAGGCAAGAACCCATAGTTAC----------ATACTTTGTGTCTGTAAGAGACACGAAGCCTATAGGGATGATTACTAGAGTTCAAATAACATTTAGATTCATGCGAATCTGAGTCAGTCAATAACCAAGGGGACTTCATGTTGATTTTCTTA--TAAGTCACATAGTAATCCACTTTTGTGAATTATTAAAT-CAGGCTACAGATGAATCATGGGAGTTCATGGAT---GTAATTTAATCAAATTCTGATCATCTTCATGAGCAATCCAAAGGTAGCATTTTTCTA--------------TCCTTATCATGTCTAAG-------CAAGT---------ATATACATTTTTAATTTGTTAAAAGTAATTGCCTCTTACCTTTCTACTCT-ACCTAAGCAAGGTTTGA---AAATCAAAATTGATTAAGAAAAACTTCAGCCATGGTCATCATAAAGTCAGTATTAACAAA
s HiC_scaffold_1 143232834 1124 + 233722169 AACTCAAGACCCAAAGACAGCTACAGAAGCAGCTGACTTAAAGAAGTGAAAAGCCAGGATAAGCATTTTCAGTCCCTCGCAAACAGAAACAGCTGCCTCGCCAACCCCTCAGAGATAAAGCTGATAATGAAAATGTTACAGACTTCTAAGAGGAGCGTCTCGCCAGACAAGGTTACAACAGTCAACTTACATTAAGGAAGAAAGCATTCAGTATTTATGATTTGCAATTTTAACTTGTGCTGAAAGTGTTACCGGAGGATTCATGGAGGGTTTAATGTTCTAGCAAATCTATTTGGTCAGTACTGTAGGATTTTATGGCCTTTCATTAGGACCTGAAAGTTTAACTGTACAAATTGTGTGTTGAATGGAAATCGTACTGTTCTGTGCTGCCTGGC---CTCCGAAGAGCTCTAATACTGCAGTTGAAAGAGGCAGTTAAAGCAGCTTTGTATTTTAAATGGGTTGACATCAGAGGCAATAAATACAATATTCATCAAAGGACTTCAGAGGACAAAGCTCTAAATGAAAAACCTGgagaattgtttattcttttaaaatttatgctcTGTGGAAAC--------CATGCATAAAATGCCCAGTGTGTAGTTtaacatcaaaaaaaaatctttcttcagtgaagaatattttaagttttaaagaattgttttaatttaacaAAATTCATAGGTGAAGCCATAGTTGCTTCTACAACTATTCTCCA-ACCTGCATAAGA----AAGTTTATAGGAGACAATAATA---TTCAGATAAGG--TAGATTCAAATACATCTCAATGAACAAGTAATCAAGGAATATTCTCATAGCTTTTTTCATTTAACTCTCTTAATTATCATGTTCTGTGTATCATTAGATCCATTCTATACATGGGAATTGAAAGTCCTTAGATACAATAGTTTGATAAGCATCTGCCAGTTTCTATGTGGTCTCCAAAGTTAGTACTTTTCTCTTGtaaattgttatttcttattttatgcaAGTATTCCTCAAGTTGCTTTAAGatata-atttttagaatattCAAAACAATT---TCTAGCTTTTGTTTACTGAACTAAACAAA--TTAACACAAACCAAAACAGCC---AATATACTTAAATCATGTTCATTAAACATATAATTTAACCAAA

a score=12644
s chr3           156098359 1002 + 160039680 ATAGATAACTTATCAATACACATT--CCATAGATCTTAATTTC-CTGTCTCGAGAGAAACCAGTACACTGGAAAGCACTCCTTATTTACTCCCAGACTTAATGGAATT-TCAGCATATTGCTTGGCCCAAATGTATATGAAGGTACTTTATCTTATTCAGGAATCATCTCTAGACAGACATTAGCATTTTAAAATGATGAAAACGTACTTCTCTCAGCAAAGGACAGGACAACCCCTTCTTGAAATGC-TAAACTCTTATTCCCATTGTAAAGATGGATGTGTCCATCAAAGCCTACAGAGCTCACAGAGAGAAAATTATCCAAATACTTTGAGAAATAAACTCTATACAAGATGAGTTTCAGATGTG-CCCTCTAATAAATCTTAATATATGATATTTT-GCTTCTCATCTATTAAC--TATTTATTTCTAACCATATCTT-TCTGTGCCAGAGTGGCAGGGGGAAATTCAAGTCCTATGCCATGCTGAAAACAACAG------CAAAGACT----AAGTCCTAGATCTTCACTTTAATCATAACAATCACAGTC---AGAGTTGCAGTGAAG--TTTTACAAGAGAACAAAGAATCCAAGCAAAATGAATGACTTTCAGCTTCCTGTGGAA---------------CAGACAGG----------------AAAGGATACGG--GGTCTTTCTCTAGAAATGTTGGAGAACGTGACTTGGATGGAG--------GATACTCACACCAG--GGTACCTGCTAAATTACAT-CTGATAATGAAACTTCTGCCATTCACATTTATGCATGAGTGGATGGTAGTAAATATTATTTGCTACCATTTAATGAAAATGTATTGCAATATGCCAGAGGAAATCCAAAGAATGTGT---------AAGTACTCTTGATATTTATCCTCTAGTAAAGGAAACACAATAAATAACTTACTCTATGCAGTATCAAATCATGTAATAATGTTTAT------GTAAATCAAGGTAAGAGAATCAGATGAGGCAGAGGAAGGAGACAGGTTTTCAGGGCCAATCTGTGAACATAGCTTCATGAAGTGAGTAATGAATAAC
s HiC_scaffold_1 143235046 1027 + 233722169 ATAGAAAAATTATCAATGATCATTAGTAAAGTAGCTTAATTTTGTTATGGTGGAAAAGATCACCAGAGGCAAAAACATGCTTCATGTTCTCAGACTTTTAATAGAGTCCTGAGCATATTGCTTTGCCCTGCAGTACACCAAAGTACTTCATCTTATTCAGAAATCATCTCCAGACAGAAATTAGCATTTAGAAACTATGAAGAAATTCCTGTCTTGGCAGAGTAATGGACAAGCCCTTATTGGAATGTGGAAGCCCTTATTTATGAGCTGAAGTAATATATATCAAT---------CAGGGAATATTGAGAGGAACCTAGTTAACTTCCTTGAAAAACAAACCCTGTAATGAATTCGTTTCTTATGGGTTTCTCTAATAAATCTtgatacaaaacattttaaaatcttatctaTTTGTCACATATATTTCCATCAATGTCTTCTGTGTGCcaagaaaatgggagaaaaagcA-----TATATTGCTCT-AAAATAACATGTAAGCCAAGGATTCGAAAGATACGAAAACATCA----AATTACAGCACACCAAATCAATAGTGTGATGGTGGAGGTTTTCACAAACTACCATTGAACCCTGGCAGGGTGTGT-ACGTAAAATATCCTGGGGAAGTTTAGTAAAGTATCAGGACAGGCAATTTTGGTACAAATGAAAGATAAAGCAATACTTTCTTTGCAAATAAGAGAGTATGAGAAGAGGGGAAAGTGGAATTTGACAGACAAAGTAAATGGTGGTCACAGACTTACATACTTATAATTTAAACT---ccatt---atatatacat-------------------ttatt------ctttcaa--aaagctTATTATCATGTGCTAGA-AAGTTTCTGGGAACATGTTCATAAATATAATGCCCTTG-TA-TTATTCTCTA-TACAGTAACATTAATAAACTATTAACTACAT--ATTGGCAATTCAAGTAATGGtaaatatataatgataaatCAAAGTAAGTGATGAGAGTGATGTATGAGATAGAGAGAGTTATTTTAAGGCAAAATCTGAAGAAAAGTTGAGGAGAGGAATAAAGGATGAC

a score=21237
s chr3           156103891 557 + 160039680 ACACAATGCTTCAGGTT-------AAGTTTGAAAGTTAACAACTGAAACT----AGCATTTTCATTTCTAGGCTTTCTGTGCCCTATTGAGTTGCATGCCAACTACTCTGTTATTTCTCCTTCTAAAATATTCATTATTTAAATAAGATTTT-ATGCCAAGATAAAGAATAAAAATACCTTATTACTAAAAAAGGACAATTTGTGCTTTTATATAATAAGATGCATTTATCCCAAGTTACTTGATGTTCTTAGATTGAAATGCAACTAATTTTAA-CTAAATGGAGAACTCCTGACAAGCTGGATCATCACAGA---ACTAAATAGTGTGAAGATAACCATGGTAATTTTCAATAATGACAGCTTTAGAGTCATTCACACTTTACTCAAAATCACCCTGATTTAGACACTTTGCCCAGAATTATAAAAAACAAAATGTCCTTGGTTCAT---TGTATTTTTACTGGAAAATAATTTTGTACCTCCCCTAAAAGATTT-AATTTCAAGAAATGGGCTAATAAA----TTATATCTGCTTGAAAAATCTCTTCCACATTTATGAGGAAACATTATTGATAACA
s HiC_scaffold_1 143238945 562 + 233722169 ACATAAGGATTAAAGTTtcttgaaaagtttaaaaattatt--ttaaaactctacAATTCTTTAATATTAAGCTGATTTTTTCCCAATAGAGTTAGAACCCAATTAG-------------CttctaaaatatatgtaatttaaacAAGATTTTCATGGCAAGATAGAGAATAAAAATACCTCAATACTAAAAAAGGACAATTTGTGCTTTTATATAATAGGATGCATTTATTGTAATTTCTTTTAAGTTCTTTGACTGAAATGCAACTAATTTTAACCTAAATGGAGAACATTTGACAAGCTGTAT-ATCACTGAGGTAGTGAATGGTTGGAAAATAATAATGGTAATTTTCGATAATGACAGTTTTAGAATCATTCACACTTTA-TTAAAATCTTCATAGCTCCAACACCTTGCCAggacttat-caaaacaaaatgtcCTCTTCTACTATGCATATCTGTATTATAAAATACTTACAGATTTCAACCAAATGATTTCAGTTTtgagaaatagaataaaaaattactTATACCTGCTTGAAAAGTCTGTGGTATAACT-TCAGGAATTATTGTTTATAGTA

a score=10565
s chr3           156107020 302 + 160039680 AAATACAGTCCTTCCAATCAGCAGAATTGAATTACTGGACACAGAGCTATTTTATTGGAATTAATTGTACAGATTTTCAATGGAAATTCCATTTTC-TCTAGAACTTATGAATTAGTCATTGCATCTACTCATTAGTCCCAGAGAAGTCTAGAAATTATTCAGTGATTTTGTTCAATAGTTAAGGGGTAAAAAAAAATCATTAAAATGTAAGGGTTTTGTTCTGTCTAGTTCATTTTTAGTAGATGT-ATTCAGAGGGAGAAGCATCACCATACCATATTGCTTGAGATATGTCATAAAGAAAT
s HiC_scaffold_1 143242841 287 + 233722169 aaatatagtTCCCTCCATAAGTGAAACAGAACCACTGGACATAGAGCTTTTAAGTTTGAAAGCCTCGCACAAATTGGCAATGCAGATTCCATTTTTGTCAAGAACTTATGAATTAGTTATTTCAGCTGTCCATTAGTGCCAGAGACATCCAAGAA------------TTTGTTCAATAGTTGAGGT----AGAAAAATCAGCGAAATTGAAGCATTTTATTCAGTCTAGTTCATTTTTAACAGAAGTAATACAGACCATGAAATATCACTAAATTCCATTAATAAGTGGAT-TTACAAAGAAAT

a score=36621
s chr3           156116180 1348 + 160039680 GTTTCCCTTTATGAATGCAAAATGCACAAAATATATGACACATCAAGGCCAATATAGGAAAGAAAAATTCAGGCTG--GGTGGTTCTTAGTCT--------------TAACACTCAGTAAAAAATGT--GTCAAATGTTTGTAAATGCTAACAAATCACCAACCCAGGGAGGGCCCTATTTTCTTATTT-GTCCTCATACAAGCAACTTGCTCTTCACTTGGCTATTTGCAGTAAGAAAATGTGAAATTATAAAACACAAAAAACAATTTCATATATTTACATTTACTCTGGGAAATCCAGGAGTACATCATATGTAAAAATATATTTAACTGTGAACCAGGGCTCCAGTATACATTTCATATTTGAAATCATTAAAACATTCACTTTGACTGAGACCATTTATCAAGTGATATAGGAAAGTAATTAC-TTTTCATGTTTTCCAAAGAAAAGAAAAGCATGATACTAACATTGCAAATTTAAATTTGTTCTTATGCATTAGCCATTTATGATGATTGACAAAGCACAATGGAACATACATCAACTTATAATCCACTAAAGTATAATTTTGTATCGTAGCTGGAACCCTAAGGATTGAGAACATCTTAATGAAAAAGGCTTCACATATTGCCTGTAATAAATAAACGACACATGGGAATTGATCATTGTTTACTGCCCAGGGGAGAATCTTCAGGTCAGAAAAATGCAATATTCTT-CAACATATTTATCAGAAAATAATCCAATTGTCCTCAGTTTTGACTTGGAGAATAAGCTTTTGC-AAATGACAAGTCAGTGAGTAATAACTTAATTGCTCaaa--aattttaagaatt-aaaattaatattgaataatttttCTAAGAAAATGCTATGAAATATATTATGTA--TGCAAAGGCAGAGATTATAATAAAAGGATTAAAACAAAGTTTCATGATGATACTGTTTTATCGAAAATTTTAG-AGAGAAAATACAATTTA--------AACATTACCTATACAAGTCTAATTTAAATACTGATTAATTAATAAATTATTGCACACACATCATAAAC--ATTTTATTGTGAATAAAGAGGGCATTCTAT------CCCATGCTATAGTTACCATAACAATAAATAAAAACAATCATTACTCTTTAAGAGTACAGAAGATATGAAGCACTTTCACTTTAATTAGCAGAAAAAGATGTGACAACATATCAGCCCAACAATTCAACATCACCCAACTTACCTGTGATTGTTCTTTATATCCATCAAAGAATAGGTTAAAATCTTAACAGATGAGCAAATTTGGTCACAGTTTCCAACCATGACCTTGACTTTGAACTGAATGAGACAC-AGTTTTGAAATATCAGGATTTTATCAAGGAAACCATGAAAACTTAGAA
s HiC_scaffold_1 143246291 1338 + 233722169 GTTTCCACATATGAATTTTCAACAAACACAATTCAGTTCATAGCTGGGTCAATATAAGAAAGCAAGAATTCTGCTACAGGTGGTTCTTATTCTGTGTTTTTACCATTTAACACATA-TAAAGGACACTAGACCAATATTT-TAAATGCCATAAAATTATTAGCCTGCTTGAGGTCCTTTGTAAGTGTTTTGTTCTTCTACAAACAGAAGATTCTT---TGGGATGGTTTTA------AAGCTAGAGATTATTAGA-ACTGTAAACATTTTTACTGAGTT-CAGTCACT--GAGAAACTCAGAAGTTTACTGAAAGTAAAAACATATTCGACTGTGAATAGAG--TCTAACATAAATTCTCTATTTGAGttcattaaaatgtttgcttttatttagtCCATTTATCAAgtgaaatacaaaaatgattgcatgttcacttttttaaaagaaaagaaaaactggatagtaacatttcaaatttaaatttgtttctatGCATTAGTCACTTATGATGATTGATACTGTATAATAGAACACATATCAAATTATACTCaactaaa-tataattttatattgtgATTGGAACCAGGAGTCCTAAAAACATCTTAATGAAAAAGGCTTTGCATATTCTCtgtaataaataaatgaca-actGGAATTGATTATCATTTACTGCCCAAGGGAGAATCTTCAAGACAGAAAAATGCAATATTCTTACAACAGATTTATTAGATCATAATCAAATTGTACTCAATTTCAACTTGAAAAATAAACCTTCCCAAAATGATGGTTcaataaataatactttaattgtccaaaagaattttatggattaaaaattaatattgaatCATGTTTCTGAGAAA---CTAAAGGATTTTCTACAGAACTATGAAATCAAAGAATAT----GAGGTTGTATAATAAAGATGgataatgatatatttttaagatgaaattcagaagggaaaagagagTTTAACAGGCAGAAAAAGGACAGTGGATGCATTTTGTACATATTGAATGACTACTGAATTCCTGCAACAAAATAAGAAGcaaattttgtttcagaaataaagaataatCTACCAAAAACTTAAGGTGAGgtttgcatataaatatat-aaaacaagcagG----TTAAggactaataaaaatatgaaacattctAGTGCTAATttacag-aaaagatagaagaaactATCAG---AAGCATT-AACACCA-------TGCCTCTAATTG-TCCTCAAATCTCTGTAAAAAT--GCTCAAACC--AACAGATAAGGAAATTTAACCATAATTTTC-CCCAAG---TTTACTCTGATCAAAATAAAAGTCTAGCattgaaa---aagtattttatttttgatgtcaataaaaattaaga

a score=22819
s chr3           156121075 2219 + 160039680 TAAATAGTTCTGACAAAGGCTAAAATAAAATT---------GTTATTGCATTTTTTGTTTTTC-----TAAAATATTTTATTTAACCTTCTATGAATCTATTTATTTTTAAGAGAAGTTGGAAAGAAAATAATCTCAAAACGCAAGGAATCAAATTTTCACACCTACAATTAGTTTCATACTTCAG-----TAAAATTAAATCCTATAAACAAATCATAGTGATGTTTGAATTACT-----TTTCTGAGACAATGGCAATGTTTTATTGTTGCTTCTTTT-------------------ACATCAATTTCAACAGTTCCTCACCTCCCTTTTTTAACTGTCAATGAATTTTCAAATGTTTT---AAATGCAATG------------TTGATATTATATTTACATCTGGATGAATTGCTTTTGATGTTCTTATTATTATCTAAAATACGGTCCCATCATTTTCCTATTATGTTAATCAGGACTGCACATTAACATGTGATACATTATATTTTGAAAAACAAGCCTGTGGAAGAAAACATATCCTACACTCCTCTTGGTC--TTCTTTTTAGCTAATTATTCAAAGAATATTTTCTTTATTGAGCATCCAGCTTAATTACTTAATTAGATTACAGTCCAGAAT-GCTTTCAAGAAGTGCATCCCATTCTATGAAGAGCATAATATGTTATAT------AAATGTCCTAATTATATAAT-GGTGGGTAAAATGGATTAGTGCTGAAGAACATACATAATGGGAGATGTTTAAGAAAGTGAACAAAATTCACAGAACAGCACAGTAATCAATGCTGGGCATAGGAATACAAATAATATTATCTA-CTTCTAAATTTTCTCAGAATGGACCAGAAATTAGGATGGAAGGTATTTATAGCACTTTTAGGAATATA----------------------------------------------------TATTTTAGATATTGCCAC----------------ATACCTTGAACATA-CCATAGCTAACACCAGCACAAATTTCCTGAGGTCATTCAGAAAAT--GCAGCATGACAGCACTCCCTGGAGGTTATGAAGCTCTGATTGCCTGAAATTTTCAC------------TCTGTGT-GTCAGGCTGAA----AATTTTGGTGCTTAT--AAAATTCCAGGAACTGCCAGATCCCAGCCTTCCCACTAGAGGACTGAGATTGTCAATCAAAGTAACTTCTAAGAATTTTCCTATCAGTAAATGGAGGAACCAGATTGTGATAAAGT-TGAGGCAGCTGGATGAGCATTTAAAAATCATCTGAAACTGAGCAT---GGTGCAGAAAGACTTTAATCCTggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcag--aggcagaggcagaggcagaggcagagtcaggttgcttagttagg--ggccagcctggtctacacagagcaacactctctcaaacaaaaacaaaCAAACAAAGTTTATAGAAATAGAAATAAGGTAATAAGCAA---------CTAGGAAATTGTAACC---------AGGAATGTA-------------------CATGCACATGTAACTTCTCT----TTTTAAACCAGTCACTCAAATTTCCTGTGAAGTAGCTCAGACAACAAGACAAAAAGAACAGAGTGAGTATTCTATAACAATGGGTATTATAGTGGGAGCCATAATAAATAAATTACATCATTATTCACGAGGCATGCAACTTCCTCAAACTTAGCGGAGTAAAGAAAGCAAAAT-------GTAA---AAAGATCCACAGTTTAGATTTCATAAA-ATGGCAAAATGCATTTTGGTGAAAATTT-------------------CTTGTTCTCTTCTCTCCATA----TCTTACATTTATTGTTATAACTTAAGATATTGAATGTTCCTCAGACCAGCTACTC-TGGTTCAGTGGCTGCATTTAAAGGCT------------------CTTTCTAAAAATGGAGCACAGAATA--CCTGGAGGGAGTCACAGGGGGTTACATCATGGAAGTACGGGTGATTAGGTAATTCTCTTGATATCCTTCAAATCACACATTGATGGATAGCAGTGCTCTCTGGGCTCTTCCTATTTTTAGAAACACCTCAGCCCAGCAGA-CTGGGGAAAGGCAGAAGAATGGCATTTCCATCCTTGGCCTGTCGGGGTGA----GGTCTAAGCAGG-GATCTGATGGGAA-AATGGCCTCTAGATTGGAATTACGTAAGAC------TACAGGAAAATGACCCACTAAT---AAACTAAAAGAGCTGTTTTGGGAG-GACCTAGGAATGTCTGCTGCTCAGAGACTCTCAGTGCGTTCAG
s HiC_scaffold_1 143252934 2195 + 233722169 taaataactctaATTGAGACTTAAAGAAATTTCTACTAATAAtcattatagttatttttatcCACATACAaattatcttatttaaaataatatga------ttattt-------------------aaat--tcttaaaatgtaattaatatgTTTGTTGTAACtaaaattaattcattatttAAGAACACTGAAATTGCAGCCTA-AAATAAAGCACTGTAATGTTAGGATTATAACCTATTTCagggaaaa-----atgtttt--tgtagtttctttttaaattatcagtatgttttatattacttttaaaatgagaacTCTTCCTTTACTTAACCATCAAATAAATCTCAGATTTTATTACAAACACACTACGTTTTGGCTTATTAGAAATGTATTTGCATGTGGATAAATTGCTGTTAATGTTTTTGCTATagtctgaaatatttttcaatcattttcatattatgaaaatcaagaaaatgtattctTATGTGGTACATTATATTTTCAACAATGaatcttcaaaagaaaacatacac-acattGCATATGGTTGGTTTTTTTTCACCAATTATTCAAAGGATATTTTCTTTACTGAGCATCAAGCTTAATTACATAATTATATGATGGACCAGAATAGCTTTGAAAAAG--CATCTCATTCTGTGAAGTgcataatacattattttttaaaaggtgccCTAATTACATAATTAACTGATAAAACAGATTGACTCCAAAAGACATACataatagagatttttttttaaatgcagttaaA-------AACAACACTATAGCTCATACTGGTCAAATGCATCATcagaatcttgtttttcttataaatttactt-gaaagaactgaaaaatagaacACACAGAACTTTCAGAGTATTTAGAAATATAAGCACAAAATGTTAGCATAATTAGAAAAGTGGGACAAAATCAACATGAATGTTGTTCTGCAAAATGTTACTGAAAATCCAATGTGTATGCTTTGGACATAATTGtaattaaaataaggaaatatttacGGAGGCCCTATGGAATATAGGCATTATAGTATCATT-------AGTTATAATGCTTTAGTGGGTTGAAATTCTCACTTCCACAAGTAATTTGTGGAGTCAGCACCAACCTGGGCCCTAGTACtccttaaaaattc-------------attttggtcTCCTCTTTC----------ATTTGTGTCTCTAGtgatttt-----atttcctcatctggaaaatgagATGATGAGTGTTGGTAACCCCTGGAATATTTTGCTGTCTACTTTTATCTCCTC----ATTGTGCATTATGGGAAAGGAAGAATTCGGTTGTAACAAAGCAATAGACAGGTTAATAAGCA-------------------------------------------------------------------------------------------------------------CTCCAAAGACACTTG-GGAGACAGTTATTCTGtgtgtgatatatgtgcataatATTTCTGTTTA--TAGGTTAGTCATTCCAATTTATGAGGA--AACACTTTTGTTGATGGGATAAA--------------TAGAGCAGGGAGTGGGGTAGTAAGTAATTCATAAGACTATGAAACTGTAGCAGTAAGGTTGAGgtatggaaagaaaataaaaactacagtattcacatttatattttataaaattttaaaatactcactC--------TGGAAAGT------------------------------TAAGTAACATATTGCAA----------GTTGAGGTCCAGGCTGGAAGAACTAC-----------CCAG-------ATTCTCTCAAAT--------AAAAACGAAGAAACATTAGGGTTGTAACTCAAAGTTTCTGGGCTCACTTCTCAGAAAGATAACAAAAaagattt--gtaaaaatttttttggccAATCGTTTTATCTTGCACATTCCCCTTcgtagtattttaatttttggtattgTAACTTCTGATTTTGAAAATTCTATAGATTGACTAAAAATGGTACAGTTATTTTATTTAAGTGTAGTGTGTTGATCTAGAAGACCTTCTAAAAATGGCTCGTGAAACAGACATTTAGAGACTCACAAGGAGGAATATCTTGGAAGCATGCTTGATTAGGCAATTCTTTCAGTGTCCTTCAAATTATACATTGATGGATAGCAGCGCTCCTTGAGATCT---TATTTTTAGAAACTCCTGAGAACACTGGAGGTAGTAGAAGATAGAAGAGTGATATTTCCAATCAT---CTGTCCTAACTAACATAGTCTATGCAGATAAAATGATGTGAAGGATGGACTTCAGTTGTAAATTATTTAAGGCAGGCAAGGAAGGAAGATCACCCCCTAACATGAAAATAATAGAGTTGTTTGGAGAGAGACATGAGAACAT------CTCAGAGGCGCT---TGTGTTGAG

a score=12574
s chr3           156125747 563 + 160039680 GATACTAAACAATTCCCTATATAGCTTGTTTGTTTTGCTGTT---TAATTTAGATTTTTAAAT---------GTCCACTGATTCTGTAATATAGAAAGACATGATTTTTTTTCTTTTGGTA-ATTCTA---AGGACTTCATTACATATTACCTACAAATGAACACTTGCTATTTTCAAATTATTTTTGACA--------GAGAATTAAGAGCAAGCATTATATTGAGAACAGTGGTGATAGCTTCCC---AGGATGGCTGACAC---TGGCACCC-ATTGCTCAAAAGAGAGCACTTTTAGACATATGACTTCCCAGAGACACTTGACAAATTAGCAACAAGGGAAACA----GGATATTTTCCACATTGTGGGAAGTGTAAGA----TGAGGAGCTCAAGGAGAAAAAA-----------AGGGTGTGCAGAGAGATGGAATTAGAATGGCTGGCATCGTT-------CCCGAAAAAGAGAGAGTCTACTCACGGAGATAAGGATTTCTGTCCTGT-TCCTTGGCTCTTTGTAGGTGAGAATCATTAAATGTGCTC----TGAGGCTACCTGCCATTAAGGACACACATGCATCTCTATGGGCAGGAAAATCATTTAGTATATG
s HiC_scaffold_1 143259800 621 + 233722169 GATCCTGATCGATGCACTGTAATGGAGGTTTGCTTCACTATTATTTAACTGAGCTCTTCTTGCCAGCCCTGGATCCACTGATCTGTCTGTGTATAAACATATGAAGTCTCTCCTTTTGATCTGTTCCGGACAAGATGTCATTATGCATTACTTATAAAGCCAGGCTTGCTATTTTTGAATGGGTTTTGACACAAAAgttgaaaaatgagagaaagcacCATGCCAAGAATAGTGGCT-CAGCCTCTCTCGGGGTTGGCAGTCACCTCTGACTCCTTACTGCTGACAAGAGAGCACTTTCAGGCAGATGAGTCCCCAGGGACACTCAGGAAGGTAGCAATAAGAAACACATTATGGACATCTTCCTCTTTGTGCGGAGAGGAAAAGTGCTGAAGAGCCGGAGGAGAGAAAAGAGTGAGAAAGAGGGTACGCAGAGAAATGGGATTAAAATGACTGGCATTATCGAGCCAACTGTGGAAAATTACAGGTTAGTCAAACAGACAACGATTTGTCACCCACGTTTCTGAATCTTTATGATCAAG---CATTAAAAACATTCCTTGTGAGGTGGGATACAGTTACAGTAACCTATCTATCTTCTTGGGAGACAGAACCGTCCAGCCTATG

a score=4294
s chr3           156130643 493 + 160039680 ggtgatatatatatatatatatatata-------------tatatatatatatatatatatatatatctggtgatatatatctgg-tgattttatatatatatatatatatatacatagcgagagagagagagactttgctttttgctggttgACGCCTTAGGAAATAG-CATTTAAAGAAACATGGAAGAGACAGCTCTGACTTACACAAT----------------------CCCTTTTTGTTCATGCTGTAATGAAT--------------------------------------------------GATACCATTTTGGTCT-CAAAAATGTAAAATAAAGTTTAAAGTTAGAAATAAATCATGGATTCCCTGTATTTGCATCAGTGATCCAATCAATAGGTTACACTAGGAAGTGATG---TTTATGTTTCTAGGAGTAGAGAACTGCCACTGAAATACAGTTATTGAGGCAGGATGACCAGA----GCAGAAG--TCTAAAAGATGAGGAGTACA-------------CAGGCCTACTCCTCCTGCTGATCAGCTACAAGATTTGATAGAGCTCCCATGTAAAAAATTA-GAAATGAA
s HiC_scaffold_1 143262251 576 + 233722169 GATCATATATAGATAGACAAGTAGATAgtgatattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactccAAGCTTACACCAAAATCATTGTAGTTGTCAGTGCACATTGACATGAAGAAGTAAATAAAAGTGCTTTGCTTATTACTG-CTGccagtttaggaaaaaaacctttatataaaatttgaagaaatagct--gacttttacaataataataatgataataataatgtctCACTTTTTAATGTGGTAATTAATTACGTTCATTGACTTTACTGAGCCCaactaatgaaatatttaaaaaaatggatgGTATTTTGGACTTCAGAAATATAAAGTCAAATCTGAAGTTAGATGTAAATTGTGGTTTCCCTGGCTGTGCATAAAGAATTCAATTA--AAGTCATGCTATAACAAGTTGTACTTCATACTTTTGGTTATACAGGat-------------catttgtgtgtgtataatgGTTTGACTATACAGAAAATTCTGAATGTTGAGGGATAAAGATTGGGTGGATTTAGGCC--CTCCAACT--TTGTTAGCTGGATGATTTTCTAGGGCTCCTTTGT------TTATGAAATGAA

a score=23279
s chr3           156134200 2974 + 160039680 AAATGTCTAGTTCCTGATTCTCATAAGGGATCCAAAATAATATGAAAACGTATCAAACTTATTATCT--GTACTGTGATATTAGGTCCAATTGCCCAAGGGCTTCTTCTTCGGAGCCTC--TTGCCTAACTGTAATTATTGATGGCACTCTCTCAGGTGTGCTCATCACTCTCATAT-----TTAT---GATTGACTACTTGGTAACTGTAACCTAGACAGGGACCTCATACCTGGGATCACAGAGAAGTCAATTAACTCTCAAAACCAGTGGAAGAATCTCCCATCA-CTTACAGTACCAGGTAGCATTGCTTTACCAG-TAAATTAAAATGAAAGGCTTTAAACTCAGTGGCCTCTAGGTATTGTTTTAAAGCAGTTT----CTATAGTGTCCCAGAGTGAGCTGATGTGTGCTTCAGAAATGGCTTGGGAGGGGTCATGCCATAGTCACTGTGTAGCACACCCCCATGAGTTTTAAT-TTTTAATTCTTCATACTAGCAGGCTGAAAGAGAACTTTGGGGACT-GCCTTGTTTGTATTTATTGACCATTTCTAAA-TGAGCTATTTTAGAGAAGACATTATTCTTGTTAGAGTTTTATTGTTTGGAGACTTCCAGAACACTTTTAAACCATGTTTAGAAGAATAAAGCAAACCGCAGTTCA-TGGCCATAAATTTAA-GAGACAGGCAGTGTAAAGAGAATGAAAGAGAAGCA-------GTTACGAGAT-GCAATATATTTCTAAGCTTCAGGTAATGTCTAGATAGACCCTCTTGATGAAAGA-------CCCATCCTTCCTTCCTTTCCCCCTCCTGCATC-CTCCCCCTCCTTTCTTTTCTTGC----------------------ATTTAGCAGAGTGTGAGGA-GACATGGTTATTTAGAT----TTTTA-ATTACTATAAGTAATT-CATCTATAATATTTTGTATCTAGGTCAATCCAATTTTAAGGAAGGCCCAGTTCCGTCCCCTAAACATATCATGCTTAACCGAATACACAGGAGACAAACTCACAGCTTTGAACTCAGCAAGGTAGATGCAGTGTCCAAACTCTCATAAACTAAAGAGA-------CCTTTAGTTTTTAACCTGCTAAAAGTGAAAGGAAGTGATGACTTTGGTCCTGATGACTTTGGTCCTCAACATTTTCTAGAATGAGTCCTTAGGTATGAGGCTTGCAGACAAACTCCAAATTTGGAGGTGTAAAATAAAAGAAGAagggggagaaagagagagagagagagaTCTAGAAAACTGATTCCACAATTTTATCAATAGGAAATAACC--CAGC-TATTTGGTGAGGA--GGCTCACAATCTTCATCCTAAAAATTGA-----AATGTATGTGCTGT----TACAACATTCATTGAAAGTGATTTGGCAAACGTGATTATGTTGACTACAGAGCACCTGCAGTCT----AATACAAGTCAGTGGAGATGCTTCCAGTAAGAAAAGGAAAACTTTCTATGGGTTTA------AGATCCCGGAACAATCTTTAAGTTCTAAGA------TGTGCTGAGATCACTGAGAATGTCAC--TTCCCTGATCAGCTGTGGAGGACTGAGT-AAAACACACG-----------------------GTGGGCTCCACACCCTTTCTCTGTCACCACTGCCAAGCTGGACAAGGCAGTCATTC------TTTAAGACATGGTTGTGTCCCATATTCGATGGCATTGCAGCACATTTCTTA-------CAGTAAA--------TCACATTCAATCATAGTCTTGCCTCATA----------------TATTTATATGCTTGATATTTTA-TTTCCCTTGTATCTGTTACAAGATA-------------TGGATTGTTTATTTTCCAATGAAAATACATATATACTATATGGAGGATTTCATACATCAAACACAAACAA--AAATGCACACACACACAGAGGTGTTTTTCTGATATGTGTAT-AAATGAAAAGAGGAATTAATATTTTGATAAAATGAGAATATGCCTGGAAACAAA-CTTGAAAGTTCTATCACATATTCCAAAATGAAAATATGTATTTTAAACTTCTATTTTCTCTCATTTATTTTCATTCTCACTTCTTAATCTCAAAAGGCACTAAGTAATCA--------TTTTGGGATTC-------TTATACTATTGTTATATGGA-----ATAGTGTTTATTGGA------------------------------------------------------------------------------AGGCAATTT---------------------------------------------------TCTATGTTTGTTGGAAGGCAATTTTCTAAAGATCTGGTGGT--TTCACACTTTTTAAATCTGAGAATGGATTCCACTCCCCTCCTCCCAAGATAATGGCCTAACTACTGGCAGAAGTATGAAGACAATGACTTATGGAGACTTTTATACACACTTTTTTTTCTGGGCACACTCTAAGGCAATAAAGCTACCAGTGTTTTCATTGCCTTCCAGGTACACCCTGCAGATAAGAGCAATATGTTTTGCTTCAAAGGAGA-----------TTTACTAAAAGTCTTTGTTAAGGATCTGAAGATTTCAGAGTCTTTGGCTGTGACATGGGCACGGTTTGTA--GCATCAGCCTGAGCCTGTCTATGCATCAGCTCCTT---------------CAGGGGATGGAAGGAGCAGAGAGTTGGTGTTGGCTGGT-TTCATGAATCATAACCTATCTAACGT-ACTTGTGTTAACCTTCTATGTGCTGAACAAATATAAATCATTGAACACAAGTCTCACAGATGTAGTAGTCACTACTGCTCAGGAAGTGTTGGATTATGTGTGGCACTCTAATAGCACATTAAAACCATGAGAGGTGATGGCCAAAAATTCAGACACAACCATGGATTCTTATAGCATCTATGATTCTTTGtttcttcctttcttcctttcttcctttcttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttctttctttTACTATTCTTGTCTCAATAGCATAA--GCTCAGTAGAAGAAATG---TGTTCTACAGATGTGTTAGAACAATAAACGATTTAACAAATGAATAAAGA-TGAATGAGCAATCACTTATATTAGAAAGTGAAAGGATCTTACAGTAAAAGGAGAAACTTGTAATTTAAAAAGGGATTTCTATCCTAAAAAGTCTTATT-TTATGTAGGGAAA----AGATGatttttaaaattatatataaaaa
s HiC_scaffold_1 143264704 3040 + 233722169 AAATGTTTAGTTCATG-----------GGTTCCAAAGAAATGCAGAGATTTTTCCAATTTGCCACTTTCGGACTGT--TAAGAAATCCCA----------GGTCATTCATTGATGTATCAGTTACACTACTGCAATCACTA----------CTCAGG----CTATTCATTCTCATATGGCTGTTACTCAGATTAGTTATATGGTCGCCGT----TAGTCATTGA-------------------GAGAAGCCAAATTAGTTTGAAATTTAGT---AGAATTTCCCATTTTCTTCCAGTACTATCTAATGTAACTTCTGAAGATAAACTGATCTAAAAGCCATAAGCC---ATGTCTTCAGGCTGTTGTCTTGCAACTGTTCTGTGCTAAAGGATCC-AGGGTGAGCTGGCTGGGGGTTCAGCAGAGTCTGGACTGGATCCTCGTTGCCGTCACCAGGCAGCCAGTCCGGGTTGGTTTCCGCGTCCTGGTTCTTCTCCGTAGTAAGTTGCAGAGAAACTTTGGGGATTTgctttgtttgtatttgtggaccatttaaaaaatgagttattgTTTAGATGGCATTACTCTTGTAAGATTTTTATTGTTTGGAGAGTTCCAAAACACTTTTAAACCACTTGGAGAAGAATAAAGCAAACTACAGTTCAGTGGTCATAAATTCAACCAGACAGGCAATGTATAGCAGaggtaaggaaggaaaggtttggctgagaaataaaaatgtgcaatTAAGCTGCAGGTAATGTCTAGAAAGAAACACTAGGTTAAGCAGTTCTTCTTCTtacctccttcttttcctccctgtgtacctctctccctcccctctttccttcctttcttcctctcagtcTCTTTGGTTTTGGTTAGGATGAAGAGGAAGTGGATAGTTAGGTCATCTTCTACATGGTCAGAAGCAATTAAACCCATA--GTTTTATCATgaaatataatgtattttaatgtaGGCACACATTGATCTCCTAAGCACGACATCTTCAGCCAAATAGACTTCAGGTTAACTCGTCTCTCTGAGTTCAACAAGACGACTATATTctccaagatcccagaaactaaAAAAGAGGGGCTCCTCTGCTTTTTACCCTCCCACTAGGGAAAGGCAGTGC--------------AGTACCTTACTACTCAGAGTTTCCT--GATGATTTCTTAGAATTG-----TGAATAGATGTGTGAAGTTTAGAGCTGACAAACATACTAGGA----------------------------CCAGAGACATAActacatcattttataaaattgaaattatcaaCAACTTACTTGGTTAAAAAGAGCTCAGATTCTTCACATTAACAAATTAGTGTTGGTTTATGTGCTGTGTTCTATAACATTGAATATAAACTGGTATGCAAAATGGACATTCTTGCCACCATGAAGCTTAAGATCTGGGGAACACAATC--------ATGCTGCCA-TGAGAAATTAATTGCCATTCATAGGTTTATTTTACAGa-ctaagtgcaa----taaattttgTGATGCTCTTGTGCTAGTATCCAGaataatataaaagtatattGCTAAATGATGAAAGACTGAGTCAAAACatctataagaaaaataactatataaTTTATGAACTCTACTCTCTGTTAATAGTACACCTCCAATGTAGCACCAACTTGATTTCTAGGAAATTTGAGAGATAATTCTTTACTGTGTT--ATGTTAT--CTGTGTTTTTCTGAGTAAGGGCAATAAAGATAAATTTCATGAAAGACCAGCGTCTACTGTCATAAGttatcactttgtttttttttttttttttatcttttgttttccctCATATCAGTTATGAGACAGAAAATCTCTAAGTGGGTTGTCCATGCTGTA--GAAAATTAA-----------------AGTTAACCCATCATCTGCAAGTAAtcaaat-------tatatcaaaataatgtCACAGCAAATATATCAAGTAACATGAA----CAATcctctaaaacaaagaaaaaat-tatagagCCAAGTTTTGAGTAGCCCAACCTAGAGTCTAGCATG------TATGTTTTGACATTAACTTTCCTCTATTTAGTTTTAACTCTAGAATTTTACTTCTATCAtgcataaaataatcaaattttatttacatGATTCCCAgagtttatagtatt-ttatatgtattacgatattatatattacattgtcttccagtgaatatataacatataacatATTATATAGTGCCTTCCAatgtatatatatcatatatacatagcatatacaatatattacaattacattatatattatgtatatgttatatgtatgatatatatgatatatattcacTGAGACACAAATCTCCATATTTCTGGTATTCATGAACATCTTTTGAAC----GCAGTGCTTTAGCAGATGTGct-caaaaatatttgataaact-tTCTTGGAAATATGAAAATGGTgatttttagatatatttagggTTA--TTTCTCCATAGACACATTCTAtggtaataaaatcaaaagcatttcACTTCTCTCCCAG-----CCTTATTGAAAGGTAAGACACGATTGTTTGCAGAACAGAGAAGAACAGATTTTTCCAGAA--------CAAGGATTGCACAATCTTAGAGTCCTTTGATGTGACAGATCCATTCTCTACACCACATACACTGGAATCTGCCTGTATATCAGCTCCTTAGAAGCTGGGGTACACAGCAAATTGAAGAGAGATGAAGTTCATGCTGACTATTATTCTTGAGTGGCAAACTGTCTAAAATCATCTGTGTTAATTATCTCTTTACTGGCCAAATCTATGGAATTTGA-AAAAGTCC-----GTCTAATAGCTGCTTTTGCTTAGGAATTGATTGATCA--CTTGATATGTTAAAGGTATACCAAAATCAAATGAGGTAATTTTCCAAAATGCATTTCCTGTCCTAAATTATTATATCTCTTatg----------------------------------------------------------------------------------------------------tctttttgaaatatttgccttAA-AGTGTCATTGTTTATGATAGGATATGTCTTGTTCTCCAGGAGTATTTGAACAATAagtaattt---aaatgaataaaaaggggATAGACATTCACTCATACTAGGTAATG-TAGTCTTTTATAAT----GTAGTAGACTGAAGATAAAAATTGGGTTTCTATCACCAAAAGTCTTACTGGTTtataggaaaaatggaaattagtTTAAAACTCATGTGTAGAAA

a score=17243
s chr3           156140757 1186 + 160039680 ATTATATTACCCATCTTTTTTGGAATTCATTTCAATGGAGCCAGGATGAGGTAT-TCCACTATAAAGTGGCAAGCTCCCTCCAGAAAAAGTGTTAAATGACACAAATTTCTTTGTACTAGATCAACAGTATATATTTTTTTTTCTCAAATATCAAAGACTATTAAGAAAATTTACTTTAACAGTTTACTCAGGTGACCTTACATACATACaatttattgattaaaaataaaatttaataaaataa----GTCATTCATATGGACATATGCACACATGTATGCATGtttctccctctctctctctgtctgactgtctgtcggtctctctcttctctctcttttgctcactTATGCACACAGTCAT-------CAAGTCAGATGAGGACAAATAATAATAAGGCTGAACTAACTTATTTATAAAGTCTATTTCAATGCCAGCTGTCTGAAAGTCCATGAACCTGTGAAACGC-AAAAGGGATAAAGTTAATTAGGAGCAGTTTCCTGGTGAGCTTAGGGTTGGGTGTGAAGAAA-----GGAAGCAGAAAATCCAGCCAGCTGGAAAGGAAGGAGACCACACACTGGAACCCATCAAAATAAAGATTTGCACATGGCTCTCAACATCTGCTTCCTAAAGGCAAGCTATGCTAAGCCACGGTTGTTTCTGCCTAATGAAATATAAATATTAAACAAG---TCTTTGCTGTTCTA--GAAAGTACTTTCA------------------TCCTGCTTGGGAAAGTTGCTTCCTCTGGCTTCCTTGCTTCGCCAG-CGTTTCATGA--CTCACCCAGACTTCCTTCAACCTAGCAGTGAGCA-TTGCAAGTCACATGATGACAACAAGTGCAGCCATTACTCAG--CTATGCACTCCCTGCTGAGAAACACCATCACTTCGCAGCTTTCCTCT---CTATAGTAATGCATACATAAAGCATCAGCAATGCCTCAGCTGCTGAGGACCC-ATGCTTGCATTGCTTCTGCCATGATTC-GTTTCAAACCATTAAG--AATGCCTATAGAATTGGCCAGATA---TTTGATGACCAGCAAAGTCTGATGAGATCTGCTCTTAGCAGGGTCCTTCAGGTATGCGCTTCATATGTGTTGGATACCATTCATTGTGCAACATTGGTTTATCATATC-CTAAGTGTTTAAATAACTTACCTGACACTGGTTATGGTAAAATACTGACACAAGAAGATATCAGTCTAAATGCTAGTTG
s HiC_scaffold_1 143273504 1137 + 233722169 ATCATATTACT--GCTATTTTGCAGTTTACCTCAGTG-ACTCACTATAAGATTCATCCAATATTA-GTG------TTCCtctaaaaaatgtga-aaatgaca---acTATTTTGAATTAGTATGTCAGTaaggctattttttta--aaaagtcgaATCCTGCAAAGAAAGtgtgcta-aatattttttttcctt---ctgattcaAATGTacttttttgg--aaaaagaaaa-------gaataacacTGTCACCCA-----AGACTAGCAAACATGTGTTCATGTGT------------------------GCATGACGGGCACATACAGA----------GCACATGCATGCACAAACTCATGATCATTTAAGTGAAATAGGGA----GTCCAGTGAGACCACACTAAGTTATTCATAAAGTCTGTTCCAATGATGATAGTCTTAAAGTCCACGGATCTGTGAAACAAGAAAATGGAGAAAGTTAATTAGGAACAGTTTCCTGGAGAGCTCCGGGTTGGATATACAGGAAAAGAGAGAAGCGGATGAT-CAGCCAGTTGGAAAGGAAGGAG-CTGCATAC-GGTACACATGGAAAGTAGCATTTCCATACTAAAC-CAACCTCTGCTGCCTGACGTCATATTGTGCAAAGGCACAGTTGCCCAgctcttaataaatataaatattaactaaGTTATTTTTGCTGCTCTACTGCCATTATGCTCACTACCTACCCATCATTACTCCAGCTTTGGAAA------------CAATTCAGTGGGGAGGCAGTCGTTTCATGGCTCTCTCCTAGAGACAGTTCACCCTCGCAGTGAACATTTGCACATTAGCAGGCAACAATACATGCTGTCTCTCTCCAATTCTGTACATTTCACACTGTGAAATGCTATTGTATTATCATTTTCTTCCCTGCTACACTAATAAGCATGTGAAACATCAGCCTT-----------TGAGGACatgatgtttat-ttgtttgttccaGGAGTCTTTTTTAGACTATTAAGCTAGTCTCTCCAGAaccaaaaatatctttttttgtgATAAGGAAAGCTGAGTGAGGGCTGCTTTTTCAAAAGTCCATCA--TAGGGATCTGTGATGTACATGATATC-CTCATAAAGCAGCAGTGGCTCCTAATATCTCTAAATGTGCACATCACTTGTCTGATAATAGCAATGGTAATTCACTG----AAAAGGAGACCAACATGCAGACTATTTG

a score=10978
s chr3           156147363 763 + 160039680 TAGCAGCGGATGATGATTATTGAATATGCTATTTTATTGTCCTTATTAAATTGCAATTATATAGATAGGTAGATAGCTATAGATATATAGTCTATTCATTGGTTAATTTGGCTATTTTAAA-GTATATGCCTATCAGTGACTTGGAAATAA-----TTTTATAC--TTTCTAAATGTTGTATTA--ATGATATCATCCACTCAATCTGTATTGATTTTCAAAATGGGGGCATGAAAAGAA----TTATTAATGAAGTATCTTTTGTACATGCCATAAATATACTAACATCTGATTTCAAAT-------ACAAAGGATTGATTTTAAACAATTATA------AAAAAGAAGAGTCTACCAATAGATTCAATAAAAGAGGCACGGGCACTAGTATCTCTGATTTAGATCTTCCAAGAATACATGAAGTCTGAAGAAGTCATGTGTCCA-AAGACTGGAAGCAAATAAAAACAGTCCTAAAAGGCGACTTCAGTCCCATTCCATCA-----------AAATTCTTGAGAAGAAGCTAACATTTTAGGATCTAGGTCTTAAGATGTGAGGCTTGCATATAATTAGACCAACCCATCTAGAAGTAATTATCTATAGATTACCTCAGGCATCCTCTAAGAA-AGAGTCCCTATAAAAGAACAC-ACTGTCATAAAAGTTCAGT-----AATTATAGCAATTCACTAGGA-ACAAAGTACCCTTTGCTCTGTTGATAAATAAAACAATGAAAACACTACCCTA-CCAAAGATATTCCAAGTCTCTC--ATTCTAACAGTAGCTATtttcttttttttttt
s HiC_scaffold_1 143286281 738 + 233722169 TATCAACCACTGATGATGATTGGAAACACTATTTTATCAGTGTTTTCAAAATG-------------------GTGGCAAATGTTTTATAATCTCTCCCTCA-TtagtttgaattcattatgtgtatCTGCCCATCAATTATAGGAAAGTATAAGATTTTTATCTGGTTTCTGTAAACCATAttacagttatatcttttagttAAACTTTATTGATCTCCATCatgatggaagaaaaaaagaaacctatcAATGGAATTGCTTTTCTATATGTCACAAAGATGTTAAGGACAGATTTCAGATGCTGCTGACAGAGCATTTCTAGCCATAAATTATAGTTCTTACAAAACGTAGTCTC-------------TAGAAGATCCACAG-----------TTTGATGACGAGC----AAGACTATTTGGAGATT----CCGTTATGCGGCAGGAAGACCCAGCACAAGGAGGAGCGGTCCTGCAAGGTGATCTTATTCACATCCCATTATTGAATGAATGAGGCTCTTGAGAAGCAAGTAGCATTCAGGAGTTGGGGTCTGGGGTCTACAGACATCCATATGATTATACCGACCTAGCTAGAAGTAATGATCTGCATATTACCTCAGG-ATCCTTTGAGGATGGCTTCCTTCTGAGAGGACATGGTTGTCATTCAATCTGAGTTTCACCATTATAACAATTCATTTGAAGACAGAaagttttatggtt------------------ttaaaatgtCATCATGTCCAAAAATGTTCTAGGTCTCTCTTACCCTTCCA----ttattctcctctttctttt

a score=24469
s chr3           156149316 933 + 160039680 TGAGTATGTGGTAGCATTTT-TGAGAGATCGAAAAAGTCTAGATGACAACAATAAAAGCAGGCACTGGCCCTGAAAAGATGAGTAACAAAGACCCAC--AATGCAATCTTATTC----CTGCCCTTAGTGATGAGCCCAGGGCAACC-CAGTTCGTCATCAACCAGCGTCCTCTGCCCTGTCACAGTCATTTCTCTATGGTGGCATGGACCCAGCCTTGCATAACTAAGTAGCAGTGAGGCTTGTTTCAATTTTGGTG-TCTGATTGTGCTTCAGGACTCTATTGTATGTGATCTTGTCTTGGTACTTGATGTTAATTATAGCCTGTAGTCCATGCAAATGAAACTGAGATGAAGCATGTGATTTCAATTACAGAGCCAAATCTCACAATTTGAGGCTGTCACTGCAAACACTATTCTGTAAAGAATGAGCTTCACTTCATACTGGGTTTTAAAACATATTTTTAAAA--GCTGATCATAACAAAACGCATGGAAGGTTGCAGTGTTTATTACTTATTTCAGAGTTTCCTGTACATTTTCACTGAGGAAAATACAg---aatgaaagaagaaagagggtttagaggaaaggaaaaaa--cagaaaagaaggaagtagggaa-----aaagggaggaaggaaAACTAGCTCATCATGTAGAGTGACACTTAATATCCCTGTAATATGACTTTACA-CAGCACAG---CATTAGATAAACTGCATGT--------CCCTAGAGTTATTA-------------GTTAATTTTTAAAGTTGTCTGAAAAC----AATTTTTA-----TACTCTATAGTCTTCCCCTCCACATAGGTTTGGCAGCACTTTAAATACTTGGGAAACCCATTTTTAATATAAATGTGAATTTCATAATGCCCCATAGTCAATTGGCTATACTCTTTGCTAACTGCTTCTGATGA--------AACACTGTCGACTAAAATAGAAAGTGCTTCATGATTAACAGTGCCCTAGGT
s HiC_scaffold_1 143287832 918 + 233722169 TGAATACATCGTAGGATTTTGTGAGAGGTCCACAAAGTCTAGGTAAT-----CGAAAACAAACAC----------AAGTTGGG------GGGCCCTCTAGACGCAATCTCATTTGCCACTGGGTTTAGGGGTGAACTTAGTGCACCCACACTTCAT---------GC-TCTTCAGAGGTAGCAGAATCAACTCTCCACTGCAGCGCAGACCCAGCCTTGTGTAGCTAAATAACAGAAAGGCTTGTTTCAATTTTGGTGGCCTGATTGTACT-CAGGACTTTATGGTATGTGATTTTGTCTTGCCACTTGATGTTAATTATAGCCTGTAGCTCATGCAAATGAAACTGAGATGAAACATGTGATTTCAATTACAGGGCC-AATCTTACAATTTGAAGCTGTTACACCTAACACTTCCCTATAAAGTGCGAGTTTTACCTCAGTCTGAGTTTTCAAAGCTACCTTTAAAAATGCTGAGCACAACGAA-------GAAGATTGCAGTTTACAGTAATAGTAAGAGACttcactgtttattttcattGAGCAAACCACAGCAAacagaaagcaggaaggaaggaaggaaggaaggaaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggacacgA---TACCACATCTAGTAGTATTTCTTTTCTGAGCA--GTGGCTTCACATTAGCTCTGATTCCCAAAATAAACTTC-TGTATAACAAACCCTTGAATTGCAACAGCTATATAAATGTTAGTTattaaaacaaatccaaaatctaaaatgtttGCTCACTGTTCTGTCGTCTCTTGCTT--CATAGATTTAACCTCCACTTGAATGTACAGGAAA------------------ATACATATCATA-----------TCAATTGGCAGTATTTTCTGTT-GCTACTGCTGAAGACAAAATAGAACACTCATCACTGAAATAGGAAATGGGTTACCATGAATAATGTACCAAGT

a score=32111
s chr3           156153875 2102 + 160039680 AGCATCTCTGAACTATTAAACAACTTCCAAATGAACAGTTTC--TTCCTTGT--TTGAATGAGTTGAAATGACTGTCTCATATGAATG-----TTTTATAACTTAT-GTATAAACTC---ATGTTATAGTCAATCATATTTTCCTTCCTACTTTAATTTATACTTTTCTTAATATATGGGCATAACTGTTTCTGTATTGTCTT-AAATAAAGCCATCATCTGAAGCATGCCACAGGG------AAATGTGTGTGTGAGGCTTGAGTCTCCTTTCTTCTTGTAAAGTAACTGGATTTTTACCTCCTC---CACTAGCTCTCCATCAGGCAAGGGGAA-ACATGAATTGAGAGATTGCTGCATATGGAGCAAAGTACTGAATGGTCCTTCAGGGACAGCTTCCTGCCAATTTTTCATCCTAAATGTGCTTTATGTTCACAACGGTGTCCTCGACTAAGGATAGAAGACCAGTTTCACTCAAGTGTAAAAGAGCTCAGCCTCCCTGTTTTAATGGGGTTGTGTTCC-AGGGCCAGT-----CAGCCATGTCACTGTCACTGTGGAGTGCAATATCACTCAGATCCTCCTAACACAATGATCATTTAGTCAGAATTATGAAACAGGTTTGCTTTACATT-TGAAATCTGGCATTTAACTTATGATTTTGTCAATAGACACTAAAGGGCACAGACGAAAGGCTATGATGAATCAGCT----------CTCGGATCTGT-TGTGGGTTGTCT--TGGGTTGCTACGTGCTCATCACAATAATGCTGGCTAGATTCAAAGGCAAGCAGAGAAGTCCATTTCTGAAGAAGTACCCACACATCCACAGGGGAATCCTATGAAAGAGCTGTGAACATAAGATTACCCATTTACTTACAGTTGCTTCAGGGCTATTCTAGTCACAGAGACCTTTT--AGTTCCTTATTACTTTCTCCTTTCAGTGAGCATTTTCTGTGTGTTTTTCTTAGCAACCCAATGTGCCACCACCAAGAGAAGGCACAAAAGAAGACTTTATTTTTTTTGTTTCTTTGTTTTCTTGTTGTTGTTGTTTTTTGTCTGAGAATAGTAAGTCTCACTAAAATAATTTAACACTTTAATACAATACAAAGAACTACCAATGACTTGAAACATATAAGGAGATGGGTAAAATTACTAAAGTCATGGGCAAGGATCTAACTTCTCTCTTGTCTTTCCCACTTATCGATCACATTGTATTTAATACCATAAAACCCCATAacaaggattttcaggcata--taagttgagaaga--gtcctaagcaaccagagaagaatggggaagtgaggtgaggaagagaggcatgaagttaaatactgatactttaatgagcagctcgctgccatggtgacatggtcttagtcccacaggatgttctgggaaacagtccagagcatcttc----------caACTGCTTGGCA------------TTTTAAAGCCTCAAGTTTTCTC-TAACACTACATGGCAGATACAATGAGCTACATCAATTCCTAGGTGTCCTCAAACTATCAATAAACATGAACCAAGCACCCTTGCACGGTCACAACACA----------------GCATTGTGTTCTTAATAGACCTAGACAGGAGGCTACAAAATACCTCTGAGACTGAAGAGTGTGAAGGGACTACCTGT-GGGCTGCAGCTATGCTCCCCCATTTC---TGCTGTGTCTAGA-GTATATGTTCCAAGACATATTAACATTT----AGTACCACCGAGAGTAAGAAATGTTGGAAGTTCCCTCCTATCTTA---------------AAATAAGTGACTGGATTATATATTTTTCTTTAATCTATACTTATGTTTATATTTTACTTGTTATTATAAAAATGAAATATTACA----TTTTCCTAATGGTTTCTGTGCCTCCAGTCCACTAACACTCTGATCCATCATACATATTGGTATGAGATTAACATCTTCTGTTTTTC----TTAAATACTGCCAAAATTTTCTTCTTGTGTCTGAAATTCT---GAGTTTGCCAATGTCCACA-------TACACTGCATTCTACAGTGTATGCCTACGTATACTG----AGTTATTATTCACAAGTATCTTGTGGATATAAGAATTATTTTCATTTTAGGGGAAAAATCAAAATTATTTTGTAATGTTCTTTATTGAATTTAAGTGAAACCCTTATATGTTATTTTAGGTTCAA----TGGACTTTGA
s HiC_scaffold_1 143291280 2049 + 233722169 agcatcatgTAATCATAGCACAGCCTATAAACGAATATTATCCTTTCTTTGTAGTGAGATGATTAGAAATGATTATTTCACACATATGCTATGTTTTAAAgcctattaaataaaatttatatgtcaTGTTCAACTCTATTTTCTCtcgtattttaatttatattttcctaaaaatattagTATAATTGT------GCTGTCTGGAAATAAAACAATCATCTAGAGAACGTCTTGGTGTTGTCTACCTGTGTGCATggtgtttttatttccttccttcatatCTGTTGACTGGATTGCTGCCACCTCGTTAGCCAGCTCTCAATCAAGCAAGAGGAACACACGAATTGA---ATTGCTGCATATGGCAGACAGTGCCGGAGAACTCTTCAGGGAATACTTTCTGCCAATTCTGTCTTCTAAATCTGTTTTATGCTCACATTACTGTCCTCAGCTGAGAATAGAATTCCAGCTTCACTGAAGTGTCAGTCAGCCTTGTCTTCCTATCGGAATGGAGTTGCATTCCTAAAACCCGTGCCTAGAACAATAACCCAGTCCCAACACAGCGAACCCTCTATCTGAAATGCCTAAGGCCACACTCTTGCAGCCAGTCCTGGGGAGCAGTTTCCCCTTACATTAGGAAGTCTGGCATTTAACTTATGATTTTGTCAATACGTGCAAAAGGCCATAGAAAAGGGGCTGTGATGAATCTGCCATCAGCCTGACTCAGGCCAGTGTGTGTTTTTTCTGCTGAGTCGCTGCTCGTGCAGAAGAATAATGCCACCTGCCATCTGAGGAGAGCAGAGACCTCTGCTCCTGATGAAGAGCCTGTACCT-GGTGGGAAAATCATGTGAGAGAGGTGTG-----------------------ACAG-GGATCCTGAGCACTGCTTGcagtagaatttttttaaagctatttattGCTTTGtgctttcaacaaatatttattgtttatcttCCTGTGCAGCACAATAAACCACCTCCTGAAGAAGTCATAGTAATACAC------------------AGGTTTTACCGCT------------------AGGAAAGTAAGGTCGAGTGGGAAAGGTGAGCACCTGTAT----------------------ATTTGTGCTGTGTAATGGAA----------------------GTACAAG-------------------------------TCGGCCTC--------------------ACCCCACAA-GAGATTTTGCAGGCATCTTTGAGTCTGGAAGCCTGATCTTAGCAGCAAGAAGGGACTGAGGAAGTGAGACTAGCAATGCA---ATGCAG---AATACT----TTCTCCCGTGCAGGTTTCTATCCTGACTCCCTAAGCACAGGCTCTGTGGAAATGCTGCAAGACACCCTAGAGCTTTCTCGGGATGATCTCAAACAGTGAGCAAGGAACGCTGGCTTTCTAGGTACCAATTTTTCTCTTGATACCGAGTGACGGCTACTACAGGTTGCATCaactcccagatgtttac-agcttTCCCTGGGCACCCGCCAACTGTCTTCCTAGGGTCAGAAAAGACATTGGGGAGACTCATGCATCATGACTTTAGT--TTCTAG-CAGGAAGCTATCAGTT--CAGTGGGACTGGTGAGCGGTACTGGTGTAATGGTAAGACAGCTGCTATATCTGTGCATTCCTTTTACTGTTGCTAAAGGCACACTTGTAAATGCATGTGGGGATTTCAAAAATAGCAACTTATGTTTGAATGATTGTCAGTTTTGATCTTTGTTgtattttgcatttccttaacAAATGCATGTGTATTTTCTTTCCCCCTAATCTCTACCTCTCTTTA-----TACTTGTTattacacaaataaaatattataatggcTTCTCAGCTGATTTGCTTGCCTCCAGTCTAATCCCACTCTAGTCCATCACATATATGGTTATCAggttaacatcttttgtcttccTTTATTGAGCATCTCCAGCAGCTTCTTCATGTCTATAAAAACGTGGAGAAATTTCCAATTTCCATAAAAGAAGCATTTTACATTCTACAGGATACTGTTACTTGTATTATTATGCTTAATCTTCACAACCATTATGGGGCAAT--GTATTAACACCCCTTTTGAGAGGTAATC--CATAAACTTGTAA-GTTTCTCATAGACTCAGACTGAATGCTTTATATCTTATGATAAGACTAGAAGTTGGAATTTGA

a score=24980
s chr3           156172238 915 + 160039680 GAATAAATTAATGAAAT-CACTGAAATAGTTAATGGAAGGATTATTAATTTTGATTAACTGTTC---AAGAAATAGAGAAGCTATATGTTTTTCAATGTTTTAAACAAAATTCTGTTAGTAGATATTTACTAAATGTCTATTATC---------ATATAAATTAATGTGGTATTTCATTTTTCCCATACCAAA-----TATGCAAATATAAAATTAACTCAATTTTATCCATTTTACATTTAGAATATTTGAAGCTAAGAATTAGACTAAGTAACATACCAAATTCACAAATAAATAAAAAAAAAGATGGTAGATCTATATGGCTTCAGAAC-TGCTTATTA--------GTGATTGTTAATGAATATTAGACATTTTGTTTTTGAAACTGTTACTTTCTGTAGCCAGAAGATGGGGTTCCTAGAGATGCAATGCTGTGCC-AATGTCACATGACTAACAAATAACACACATGGTGTCTAGACTTCCAAACCACCATCTGTTTATCTCCCCT-TTTAGAAACATGAGTAGCAGTTAAAACAATAGTTAATCACCTTAGGAAATCTTAATAACTTATCCTGCACAGACAGGAGGTCTACAAACAATTTACACCATTGTTAA-AGATTTCCCTCCCTTCCTTGGAGAGATTATGCTTCT--CGGTGCTGAAGGTTTCAAAAGGTGTTTTATTAGTCTTTGAAATTTGACACATTTGAAATACAAATATAATA-TATCCAAGCATATTGCAGAAAATATGCATTTTAATTAA--TTGCTCTTTGTG-CCCTTCAGTTTTTTTAATCAAGTTCTTTTATCATGAAGAAAAATATAGTATTAAATAGAAACTTTTAGATATACAGACTTTTCTTCATTTTTGGA-------CTAA--TCAGGATGAAAGATAGAAGCAAGATTAAATTATTACTGAAGCATAGCCAACTAGGTTTTACATGATAT
s HiC_scaffold_1 143311555 915 + 233722169 GAATAagtgaaggaaaaacatggaaataattAACTGAGAAGGTAGGGATTTGGGTTGAGCATTAGTGAGAAAAAACATAGgctat---ttttaaagtgttt---atgaAATAAGGTTAGCAAACACTGAGGGAATGCCTGCTCTCTGCCAGGCAACATACATCAATA--------CATATTCCTTGCAACAAACCTGTTATGCAAGCA-----------CAATTATAtctgtttgg----gaaaaaaaatgaagct------cAAACTAAGGATCATGCCAAG----AAAGTGACTGTCAAAGAATGCCA-AAACCGACGTGGTCCCAGAATATGACTGTTACACACAGCATTGTCCTTAACGGTGATCAGACATGATGTATTCAGAGCTGCTAATTTCTCCAGTGAGGTACTGAAGTCCAAAGGGATAAAGTGCCTTATGGAATGCTGCGTGATTAATAAGGAGGAGACAAGCCCTCCAGATTTCCGATCTGAACTACATTTATCTCCTCTATGTTGAAACACAAATAACACTTAGAACAATAGTCAATCATTTCAGAAAATCTTAATAACTTATCTTGTTCAAGCAGGGGGTCTACAAACAATTTACACTATTGTTAAcagagctttctttcttccttaaagGGATTATGCCTCTtccacattttggatttttagaAGGTGTTATATAAGCCTTTGTGATTTGACACGTTTGAAGTACAAATATAATATTATCCAAACTTATTACAAGAAATATGTGTTCCAATTAATGTTACTCTTTGTgtcctttcaaatttttttatcaaA--CTCTTATgaagtagaaaaatatattattaaatagatatatttagaattatG---TTCTTTGTAAATCTGAAAACTATTCTAAGTTCAGGATGGAAGGAAAAAGCAAGGTTATATTATTACTGAAAGACATCCAACCACCTTTTTTCTCATAT

a score=17226
s chr3           156185631 1074 + 160039680 GTCACTGGCC-TTATCACTATGCTACATACTGGTGATTTGTGTGGGTTTTACATATAGGAAAAGGTGACAACTATTTTGTTCTTCTACCAACATTATTGAAATTTTAAAACAA--AAACTATTGCTCAATATAACAAAGCTTGTGACTTTGACTTGCAAAAGAAGTTTTTAGATAACTGTCATTAAAAAGGTCAGAAGGTAGA-TTTTGTGAATTCATA---TCATTCCTAGAGAG----------GTCTGCATTAATTCTATTTCCCCAAGCTTTCATGAGTTATAGCCATCTAGATACTTAA---CCTCTGTGGAATAATCTCACCACAGAGCCACAGTCTTTGTGGAGGAGTCTGCATAAAGTGCCTTACTTAGAAGTTATTTCTAATCATGATAGAAACTACCTG-GCAATCCTCCCCTTCTTCAAGTTCAGGAAGTCTAATTTATGATGTTAGAAGACAAGCATAGCCTCACACTCTGAGTAATTAGGTTGG-ATGGGAGGGTACACAAGGAAACACTTTAATTAATGGGTTATCTGTCTGACACTGCACCTCTAATCTTCTCAGGACTTCC-----ATGAGTGGCACTGAGTACTCTGAAAAACTGTCCACTGCTTGTAGGGAGATGCACATATTCTCAGCTGG-CCTCATCCTTG---GTCAGCCCAGATTTCTACAGAGC--ACAAGGATAAAGTCCATATCTTCCATCAGGATGAGAAACATGAT---GGATGAATC---------ATGGTTGGAATATTTCCTGTGTACCAGAAATTGCAGGCATTCAG------CTTTCTTTGATGATGCTATCATAGTATTGATTAAGTGAAAAGGAAATGAA-AGTATTTATTATCAACCTGGAAAAATTAGAAGGCTGATTTTTTATGTGGTAGAAATTCCTCATAGTAAAA-TACTGCTGCATTTTCTTGACAGAATTTTGAACCTCATTccaaatgaggtagctca-----------------tgtctataatcccaatacttggga-------aactgaggtaagactacttactaggccagcctctagtctatctgg----------tgctacataatgaaattctca-------------acaaaataacacacacacacacacacacacacacacacacacacacacacacaca
s HiC_scaffold_1 143319634 1112 + 233722169 GTCACTGGCTACTCTTGGTGCTCTGGGTACTGGTGAATTGCCTGGGTTTTACAAAAAGGAGAGACTGGCAACTATTTTGCTATTCAACTAATAgttgtaatgttttaaaatcgTCAAATTTTGCTTTGGTGTGACAA----------TTTGGCCTATAAAAAGAAAGCTGAGGCATTTGCTGTTCAAAAAGTCAAAGGGTAGATTTTTATGATTTTGTAGCTCCTTCCCCAGAGAGAGGCTATGGAACTTTTATTAGCTCTATTCTCTCAAGTCTCAAGGAGTTAGTAAAACCTAAATTCTTTATTCCCTTTATggaataaaatcatcatggtgttACAGTCATCAGAAATGAGTCAACATGATATAACTTATTGAGAAGTTActcctaaaaataacagaaaccacCTGAATACTCACTCACTTATCTATGCCGAGGTAGTTAGATTTTTGACG-GAGGAGCAATTGATAGCA-CAAATCACAAG------GGTTAGCATGGGAGGATACAT-GGGGAATGTTAGAACTAATG----AACTGTGTATCAGTGCTTCTTTAAGCTCCACAGAACTTCTAAAGGACAAGTAGTTTTGAATTCCCTACCAAAACATTCTCTA-GAATGATGTGATACGAATATATTCAGTTGGTTCCCATCTTCAAATATAGGGCTAGG-TTCTGAAAAACTGAGAGGGCTGAAGTCCTTATTTTCTGTTGGAAACCGAAGGCAGGTTTAAAATCAATTCTTTCATAAACACTTGGAACCATTTCAGTATATTAAAAATTGTATGCATGtaggttttcctttgtttaaTGGT----TTATATTAT-----------ATAGGAAGCGAAGAATAATTGTTATTAGTCTG--AAAGtagggaaac--atttttaat-tggCAGAAATTTTACATGGAAAAATTTTTACTGCAT----TTAACTGGATGT--AACTTTTT------TGAGGTAACTTAATGGATTGTGACAGGGTTGTATTGAATTTT--CAGTTGAGATCACTTCTACAGAAGTCAAATTATCTCCC---CCATTCAAAATTCGATTTAGAAAAAGAGACTGATAAACCCagacactcacatgcacacacatgcacaggcgcacacacacacacatgtacacacacacacacacacacacacacacaca

a score=64917
s chr3           156191509 2644 + 160039680 ATTTCTAATTTTTCTAATTACTTTTCAAAGTATTAA-----TCTGATACAGGAAGAGCAGCCATAATTTTTACACAGAACAATGATTCCAATT------TTCTTTCTG-GTATTGCATCTTCTTTTTC-TTCTTAATCAGAGTAATAA-----CATCGAAAAGGAAACTTTGTAGCCAATAGTTGCTTGCTTGAAT--GAAGGTAGTTAAAAGCTTTGAATAGTAGAAGTTTACTTGGCCCATTCCTGATAACACCCTGCTCAGTGATCAAAACAGGTAAAGAAAACCATGCAGGCTATTAAGTATTTCATGTTATGCCTTATATTCACTGGCAGGAGGTGCTAATGCAAGTCTTCTCAATGACCAAGCATTCTTCACCACACAGATGCTTCCATTTTCAACTTTATTTTATACAAAGATATGCAAGAGATGAGGTTGGCTAGAATGTAAAGCCAATCTTTCTTCAGTAAATAttttccttgggataggaccttatgcgtcctaggctagacttaggaactaaggatgatcttgaactaccaattactctgtttctatctctagatgctgggttataagggtgtaccactccggttttCTTTATATTATTAATTTGTTGTTTAAATGCATAGGGGTGTTATCACTTATATGAATGCCTTCCAGTATGATCTGTCATCATCATAATTCTGTTCACAAGATAGAA-----------CAGCTTCATTTTTTGAGTATGAGTTTATCTTCCTAGAGATCATGAAATGGA-TTCAGAAGCTGACCC-----TGGAAAACATGAGGACATACTGTGAGGCC----AGCCAACCCTCTGAGTTTCACCTTAATGATGTTTGCTCTTCTCT-ATCTC--------------TAAATCAATGTGAATGATAGTTATAAACCAGGATTGTTACCCAGATAAAATGATGTATGACACTTTAATTGAGATAAGAAAAGACACAATTAGCTAAGGTTACTTTAAGCCCATTTGTCATATTTATCATTAAAGGAACCTCCAAATCTGTCCATTAAATAGCTCAAGGGCAAAGGTATTCACTGTCCATAGGCATGAATTCCCTCCCAGCAGGACACATTAAACACCTGCTATCTTAGTGTCAGTAGGAAATGATTATGAAGTA-----GTGACA-GCAGAGTCTTTTGCAA------CTAGTCATTATACATACCCATAATGTAATATCAATAAAGGAAATGTATATTAAATAAGGCATTAATGCTTCACTTTGCAGTAATATTAGCCAACAAAAGA-ATATGTAAGTCAAGATT----CAAATAATTAGA------TATCTAAGT-TTAAGAAAAATATTGTAA----AGCTTAGATTGCATGCACTAAACATATAA--Aatcagtatgtatcatttt-cactatctatctagatagatagatatagacatagtcataatatatatgtgtgtgtatCAATCATACCATTCTAAGAAAATACATA---------TTTCCCATACCCAATAATATCACTAGAAAACTGGTGTTTTGAAGAAAGTATGAAACTACTTC-CATATAAAGAATAGACCACCCTTTAAATTATTTCCTTATTTGACAGTCTGTGCAGATAGAACCTACCATGAAGTTGGCATCATAAGGAATGAGGAATTAAGCCAA--AATGCAAACAAAAAAGTCACTTATTTCGTATTGACCTTTATAATGAAAGTTATTTTCCTCATGAAAAGATCAAGATATGTTTGGGCTTAGTCCTGGTGTGGGATTTTAAAGATGTG-CAAGGACTCAACTCAGTGATTATTCATACACGTTCCCAAATGTCACTCACTGAAGGATCAGAAACTGTGAAGAAAGGGAGACATCATCCTTTAAAGAGTGAGGTTTCAGTCTGATTTCACCCTCCACGAGTTCTCATTCTTCCAGGTAATGCTCGAATAATTTTATGCACAGCACTGCAAATAAAGGTAGAAAATTCTTGAAGTCTGTTTGACTCTGGGCTTAATTGAAATGCCTCTTCCACAATCATGGCTGCCAATTCAACCAGCAAGA-TGATGTGCTTCTAAATGATACGAAACCAGATAGTACATTGCATCTTGTAAATGATGCATCATAGCAGTAAGAAAAATCTGTGTTTCTTTAACCAAACCCAACAGCCTCAGCCTCCGTAAATCTCTTTTATCTGCACCAATAATTACCGCACTTCAGCAAGGCAG-TTTTAATTAAATGTCATCCTTTAAAATCAAGAAACACTTGCAAGGTCAAGTAGGTCTAGGATAAGAGTAAAGTTTGCTCTCAAATTATGAATCATTTGATACTCTGCTATAAAGAAAAATTGTAAATGGGGCATACATAATTTTCCTCGCACAACTTTAATGAGATTTTGACCATTCTGTAATTGTTTTCTCTATGTAATTTTACGTTT----GTTAAAGGATAATGCTTTTATACTTTAG-ATTATAAAACACATTTCCCCCAGAAATTTATTTCATGCAAGAAATAGGAGACATCCT-TGTTGA----------GTTTCATGACTATGAGTAAGTATTGCATGGATAAAGAAAAGAACTACTCAGCTTATAAATTTTTTAGCTGCTTTGTAGAAGTTCAAGGTAATTTTGTTGGCTATTTCAAAATGTATGAGTTATATCTTCAAATGAATGTATAATTTAACACATTAGTAACTAAGGTATGCTAAAGACATTCA--------------CCAAAAGAAATACCTAGATTAAATACTG-TTTTGACTGTTTT
s HiC_scaffold_1 143324384 2489 + 233722169 atttttaatct--ctgtttgctttacatatgtttaaaatatttcaatacaagaaaaacaggaatgattttttaaaaaactaatagcACTAATTATGTTGTCCTTTCTATACattacactttcttttttattctttcccagaaaaacaagcaaacaagcaaaaaatatttttgttgtcaaAAGTTATTTA---GAATATGAACATGATTAAA------------------CTTATTTTGTAAACCATGGCAATCATCC--------AACCaatgtatgtaaaagaaaaattctagacaa---aatatttcacattgtattttatatttaatg-------------atgAGAATGTTcttgaatattaaatatttctcctTATGTAACTGCTTTCTTTTCCAACTATCCTTCATA--------------------------------TTTAA--------TTGCTTAAGTAG-------------------------------------TAGACTTAGAGAGTG-----GAGTCtgtatttcc------------tttaattttaaatg-tgaattgcaaa---------------------ttatacaa-------attatataaatacCT-------------------TGAATACCTTACACTGTGATACACTATGATACTCATCTTATCGATGACATAAAATGAAaggtttgcagtatcattgcagGAGGCAAAATAAGTTCTCCTGAG--TCATAAAACAAAATCCATATCCTCTCTCATAGGCGAGGGACACAAGAA-------TGCGGCCGCTGAATGAACCCCCAAAATTTCAGTTTAataatgtttgtttctttcttatctcACTTACAGGTTATAGAAATCAATTTGACTGATAGTAATAAACTTGGATCTAT-CCCAGATAAAATGCCATATTTCATCTTTATTGAGATAAGAGAAGGTACAATTAGCTAAACTTATTTAAACTCCATTTATCATCTTAGTCATTAGCGTGGT-TCTGAAAATATCCATTAAATACCTCAAGGACCAGGAAATTCATTATATATTGGTGTGAATTCAG----AACACAATATGCTAAACACCTGTTATCTTGGTGTCAACATTAAATGATTATGAAGTACTATGTTAACATGCAGAATCTGTTACAATATGGACTAAtc----tgaatacaaataaaacaaaatgaataagagGAAAATTTGTTTAGAAAGACATTACCTTTTCATTTGGGAATGATACTAGCCGTGAAAATTTACATATCAATCAAAACTGTTCTAAATAATGTGAggaatttatgaaaatattaagcTGAAAATGCTAATATTAGCCCAGGTTTCACACAATAAAAATAGAGTTGATATgtatacataattttataatatctttatGATTAGA--GATGTAAAAATA-----------------------TCTCTCATAccagtataaataaataagtaaagaaatattttatcatg---aaaattCTTGTTATTAAAGTCATgttttgaagaaattaaagtaatattttatatgAGAGGAAAAGACCAGCCTTT-------TGCCATCTATAGAAGTGTA-ATTGAAAGGGTAGACAAGTATTTTGGTTTCATAAGAAAGCAGTAAATAAGctactcaattaaaaaataaaaattccttattttgttttgacctttataatgaaaattattttctt-ataaaaagatCAAAGCGTG------CTTAGTAGTTGCTTGGATTTTTAAGGAGGTAATGAGCAGTAAACTCTGCAATTACTCACACATATTACTAAATGCCATTCTCTGAAGAGCAGCAAACTATGAAGAAGCAAAGATATCatctatgaaagagaaaaatttgggTCCGATTTCATACTCCGCAAGTTCTCATCCTTCAAGGCAATGCTTGAATAACTTTATGTACAGCATTGCAAATAAAGGTGGAAAATTCTTGACGTCTGTTTGACT-TGGGCTTAATTGAAATGCCTCTTCTACAATCGTGCATGCTAATTCAACCAGCAAACTTGACGTGATTTTAAATGATACAACGCTAGATGGTATAACACGTTTTATAGATGATCCATCAT-GAGTTATGAAAAGTCTACATTGCTTTTACCAATCCC-CTAGCTTAAGTTTCTGTAAATATCTTTTATCTGCACCAATAATTACTACATTGCAGCAATGcagtttttaattaaatgtcatcctttaaaatcaagaaacacTTACAAGGTGAGGTAGGTCAAGGATAAAACTAAAGTTCACTCTTAAATCATGGATTGCCTGATAGTCTGCTCtaaagaaaaattgcaaatggGGCATAGATAATT---CTCATACAACTTTAATGAGATTTTGAGCAGTTCAGAattgttttctctgtaaaattttgcATCTCGTAGTTAAAAGACAGTGCTTTCTTAccttagaaatatgaaaaaacatttcaacagaaaaatgttttgtggAATAAGTATggtatttcttatgtttatataaaaatgGTTTTATGTGTATGAGT-AGTTTTGGAT--ATAAGACAAAGAACTACCAGTGTTATCAG-TTTTTAGCTGCTTTGTAGAAGTGCAAGATAATTGTATTAACTTTCACTATATTCATG-------------------TGTATAATTAAA--------TATCTGatatatataagatatatttaTTGTTTCTCGGATGCTAAATGATAAATGTTGGTTATGCACTGATTTCAATTGCTTT

a score=12094
s chr3           156195641 315 + 160039680 TATAGAAAATTGTAAGCTGACTATATTTTAACAGGTTTCAAATTGTTGTTGTTCAGCTATCCACTGATGCTCATTTTCTGAGGACCACTCAGTGACTCCACAGTTCTT-AGAAAAAGTCACTGAAATTTCCACTTCATTATGTATACTGCCTTTGAGAGACCATCAGGTATCCTAAAGAGATATGTAATCTACGAGTGAGAGCATTTGAACCACTCACAGATTGAAA-TGGGTCATTTTA----TGGAAATTGAGACATTCCTGTAAATGTTAAAGACCCTTTAAAGACTTTTGAGAATATCTTTAGGTTATTCATGTCTT
s HiC_scaffold_1 143329333 310 + 233722169 tacAGAAAGTTATATGTTTACAAAGTTTTTACAAGTATCAACTTACTACT---CCGGTATCTGTTGATATTCGTTTTCTAGATGCTACTCAATTATTCCACATTTCTGGATTAACAGTCAttgaaatttccatttctttccatatACTGCCTTTGAGAAACCAAagagattcttaaaaaaaaa--------atgaggaaaagcaTTTGAACCATTTTCAGAGTGAAAATTGGTTATATTAATAGTGCAAAGTGAGAGATCCCTGTAAATGTTCAAGACCTTTTAAAGACTTTGAATAATATCTTAAAATTGTATCTGTTCT

a score=42813
s chr3           156200822 2801 + 160039680 TCTCGTTCATCCTGTGTTAAACCTGAGGACTGAGT-------AAAAATCATAGAAAGCCCCACTGTACCTAAGAGGGAAGTAAGACAGTACACAAGATTGAC-------------------AGTAACCA--TGTTGCCACCCCTTTGGTGGGCATTTGTT----------GCCCTAAAAGGCTTCCAGTAATTAA---ATTAATATTTCAAAGTCCAGGAG-ATGTTCTAGAGTTTAGTAGTATTGTCAATTTTCTTTTTCAAGTCTCAACCCTACAAAATGAGTGGACAGCATTCTGGAAAGAGAAA-------------------GAAACTTTCCTCCCC-------------------------------------------------------ATCTAGTAATGAAGACATTTTTAAATCAATGATTGAACATGATTTTCAAGGTGGTAAAAATCTAATGTGTTTCTCTGCTTTTTACATTAAGGTAACGATTTGGCAGTCACAAAGCAATCTTGGCCATGTATCTGAAAACATAAAACCCAAACACTTGTAACTGCCAGGTCTCTAATTTTCTGCTTGTCACACCGAGGTGTACAAACTAGGAAGATAGTCTATTTTGTGTAACTTCAGTCAGCCACAGC---------AGCTAAGATGGAATTTTATGTGGCCTATTCCCACCTATAGGTTCCCAACAGCTTCCTACTCTCAC---TGTGTACTATAAAGAAACAAAATACTCATAACCTGACAACAGaaaaaaaaaaaaaaacaaaaaacaaaacaaaaaaaaaaaaCAGAATCTTGCCTGGAGAATGAATGGCCCTCCTCATAAATTTTACAGATTAAAAGCTATTTATCTGtaataaaaatgtttaaatata------attatttGTACAGCAATTAAAGTATTGTGTTGATTTGTAATCAACTTGGTATTTTTAGGAATAAATCATGGGCTAAAGAGtt---caatcccagcacttgggagacaaagaaaggcagatttctgagttcgaggcc--agcctggtctacag--agtcagttccaggacagtcagggctacatagagaaaccctgtctcaaaaa----------aacaaacaaaaaaaaccaaacaaaccaaaaaaaaaaaaaaaaaccaaaaagaaatgtgtgtgtgtgt-------------gtgtgtgtgagagagagagagagagagagagagagagagagagaaagaTCACACCTTCAAGTACTATGTGTAGATCT-ACAGCAGCAACCTCTCTCCTCTCTGAAGAACAGAGTTGGGTTCTCATGCTCTGTGACTCACACGCTGATAAAACAGTCAGTGGACAGAATGTGGGCCTGCTTCCTTGAATGGAAGTCAAACATGCTACCATGTCAACTGCCTCTTATAAGATTGTAAAATACATCTTGAAAAAAAAAAG----TTATGATGCCCATAAAGGATGATTtataagagcattgcaatggagactcaatggagaaggagaaatttggtgattaacttcaacaagaac--tatg-gttttctatcaaggaatgtttcatgggtagcagtacctgtagattggaaaatttctaaggcaaattacaggggtaaatggaatctccaattgacatattccactaaggatagtctgtgttgagaagacaaag-----ctagaagtaggtgataagTTTTA-------GGCACAGAG-ATGGACAGAAACAAAGGAAGAATGATGTCTGGCTCATTGACCTTAATTCTACAAGGACACTGAGAGTGAAACAAAATTCAGGGT-ATATTGACCTTAATTCTACAAGGACACTGACAGTGAAACAAAGTTCAGGTTAGGCCAACAACAGGCTTA----ACTCTGATCAAAGCTGGATCAAAGCCAGTATCTGTCA---GATATTATTAATTTAGAAACATATATGATTATACTGAGCGTCTTCTGAGCAGCCTTTGTTTAATGACTGATGGATTAAAATCAATTTTCACATCCTTTCCCTTGCTCCTAAGTTTTGCTCTGA---ATTTGAGCTGAAGAGAAAAA----AAAATTTCCACATTACTTAAG----GACGAAGGTGGTATTTGTAACAGATAAAAGGCA-TAAGTGATAACAGTTCCTAAGGAAAGAAATCATTTGAGTAAATGT----CTGAAACATCTAACAATGATTCTCTGGGCCAT-TAACCACCAGAGCAGTTTACATGTCTTATAGGAGAAAAGTGAGCAAACTGGATCTTGGTTG-TTGTTTCCATACCAACTCTACTGAAAGTTTAAGTGAGCCACAGTTTACCAACATTTTCAAAGCCCTGAATAAATAAAGACAAATGAGATTAATAATGAGTTTAAAATTGACAAAAATCATTAGTCTACAGAGATGTTTCTGTGTATT-TAGATCCCATCTGATATCCACCATGTTACTGCTCATGCCAATGTAGATGCCGGCAA-TTAGCTGTGAGCTGCCGTAGCCCTGTTAGCCGAAACACAGATCAATGCTGCTATTATGAAGACAAAATCAGCACACCAAAATGCTTTCCTCACGCTGTCTAACATCATCCATATTGATGTTTTCTGTCAATATATAATAATACACTGTCACACTTGATGGGACAGGAGGAACCGATTACACAGAAATTGTACTGGAATATGTTTTTAGGCATTGTTTCTCAGCAACAGTGTAATCAAAGTGCTTATTGATTCAGAAAC--TGACTGCCTGTCCCCACACGATGTACGAGGCA--GCAGCATATGTTACTTATTCTTATTCATTTCACAGTTGTGTTTAAAGGTGTT-----AATAAAAGGAAAAAATATGTAAT---TCATTCTTGTATTCCCCTCTTGTCTTTACTTCTTTGGCA-AAATCCATAAAAT-TGTCA-ATGATTCTTCACCTTCTGTCTACAAACCTGAAGGTTTTGTTTTTTATGATTCATCTATGAATGATCCTATTTCCTTAAC-TGTTTTCCTCACCCTAATCTGAAAGATTATC
s HiC_scaffold_1 143335128 2725 + 233722169 TCTCTTCCATCCTGTGTTAAATCTGAGGACTGTGCCTTGTCAAAAGGGTGCATACGACCACACTGCATGCAAGATGAACATAAAATAG--CAAAAGTGTGACTTTCACTTCTTATTAGGGTAGTAAATAACTGCATCAACTCCTT----GGCCATTCAGTTAGACTCCAAGCCCTAAAAGGCTCCCATTTGGTGAGGAATGGGCAGTTCAAA-TCTAGGAGCAACTCCTAGAGTTTGGCAGTATTGTCAGATTT-TTCTCAAGGTCTCACCACATCAAAATT----GACAGAAATTCTCATAAAGAAgattctctctgtgtgtctctgtgtctctctttctctgtctctctctctctttctctctctctctctttctcctctctgtactctctgtgtctctcctgaagaaaatatttt-aaagcaaaaaacgaACATGATTTTCTAGGTGATAATAACCTAAtgtgtttctttgctttt-acATGAAGGTGCCAGTTTGGCAGTCACCATGTAATCTTGGCCACATATCTACAAACATAAAACCAAAAAACTTGTAGTGGCCAGGTGTCTAATTTTCTGCTTATCA--------------ACCCAGGAAGCCAGGCAATTTTGTACAAACTCTG-CAATCTTAGCTCTTACTTAGCCTAAGTTATAATTGGACCTGGCCCTTCCAGGGTTTTAGA---CTAGCTGCTTTCAAATGTAACCAATGTGTGTTAAGAA-----------CTCAAAACATCCTAATATGCAGAATGTAAAAATCCTGAGCTTT--CAACCATAGGACGCAGGGTATTTT------AAAGCACAGTTTTCCTTAAAGCTTTTATCTATGGCAAATGAGTAGTC---AAGTGAAAAGTGTAATGATTTTTCATATTATTCATAGAGCGAT---AGTGTT----------------------------------CTAAGTCGCAGGTTAAAAACTTGCGTAGTTGGTGTACT-GTGTGTCAA-------TATACCTCTAA-----AGGCCTCCACCTTCTCTGAAGGAAGGCGGCTTC-------CCATCACTCCAT---------CTGTCTCAGATGCTGTTGCCCTAACAGGCACAGGAAG-----------AAAGCAGTCAGAAGAATCCACGGAGCAGGTCATCTATACTTATCACTTTGTTAAGTGTTCATGATA-------AGCCTTTGAAGGAATGTTAGAGCGAAAAATTACTCTT---AGCACCCACTAAAGATTTTACAGaggatctttgtttgtttgttggtgtgtggaattgaa--ctcaggcctt--------catgcttgccaggcaggtgctgaa----------------tcACTTGAGTG-------------------------------------------------ACATCCCCAGCGATGAAGGACTTTTATCAAACAGGTATAGG-----------GACCACTGCAATGCTGTCTTGAGGTAGAGAGACTGTGTTGGGCAGGAACCCCTAAAAGGACAGCATGAGATTTCTAGCCAGGCATAGAGCATGAGGCAAGGCAGTTGGTGGGTCCAAAAGTCCTTGAAGAAAT------GCTAGACTGA-----CAGTGAAAATCTT--GCTAAAGGAAAGCCAGGGTAGGACGACCCAGAGTTTCAGGACTGAGGTGAGAAATTTGATCTACCCGACATAAAGCATGGTCAGATACCAGAGGTGGA-GAT----------------TTAAT---------ACACTGATCATG--------TTCTGGCTCAAATTGT-----ATtctacagagacagaaaaa---agcccAAGCTCTGCTCCAGACAGCAGAGGGCTTGGAGGAATCCAACTGAAGTTAGGTCAAAGAGAGTCTTGGTCAACAGGAATCTTTAATTCACTAACACGGTTATGTAACCTGAGGTTCCTTGGAATAATTCGTTTTTAGCCTTTAGTGGATTCTATTCAGTTTCCAAAGCCCATCCTTT--TCGTCAGTGCTATCATGATTTATTTGGGGTCCCAAGAATAGGATGAAAGCCTGCATGTTTTTTCAATTCTGCTAAAG----------TCCCAAACCAAGAGCACTGCAATATGAAAATCACTAAGCAGACAACGAGTGTAAATAATTGCAAAACTGAATCagtt-----tcaatccctagtacataCAGTAACCAAAATAGTTTATTTATCAGGCCAGAGAAGAATAAGCAAGCCAGAGAATGACTGCTTATGACCGTGCCAGTCCTACTGAAAGTTTAAGCAGATCCCGACTTACTAGCAATTGCAGAGCTCTGAACAAATAGGGACAAATCAGATTAATAATTAATTCACCATTGACAAAAATCATTAGGCTGCAGACTTGTTTCTGTGCATTGCACATCCCATCTGACATCCATCGCATTACTGCTCATACCAATGTAGATACGGGCAAATTAGCTGTGAGCGGCTGAAACCAGGA-AGCTGCCATACAAATCAATGCTGTTATTATAAAGACAAACCCAGCGCACCGAAATGCTTTCCTCCCAGTGTCTAACATCATCCATATTGATGTTTTCTGTCAATA----ATAACACACTGTCACACTTGATGGGACCGGAGGAACAGATTACATAGAAATTGCACTGGAATATGTTTTTATACATTGTTTCTCTGGAATGGTATAATCAAAGCAGTTATTGATCCAGGAACTTTGACTGCTTGTCCCAAAATGATGTATGAGGCATGGTGGGAGAAGTTACACATTTCTATTCATCTTACAGTCGTGTTTAAAAGTGtcggctaaaaaaaaaaagaaagtctgtaatttgttatttttgtact-ttttctcacttctctttCTGCAGTACAAAACCACGAAGTGCTTCACACGCTTCTTGGCTGTCTCTCTGTAGGTACGAAAAGTTTGTGTCTTGAAAAGTAGCCCCGAGCAAACTGATTTTCTTCATGCATTTTAACCACCCCAGCCTGAGCCATCGTC

a score=31520
s chr3           156209972 1623 + 160039680 TGATATTGAAATCTACCTTTCCTGATATCCATAGCTTTTTGAAGCACATT-TCCAAATCCTTATAGAATATAGCTATTGTGAGTTCCTACTGAGAAACAAAATTGTGTATAATACAGCTCTCAGGGGTTTTGTCATTATTACAATAAACACTAGGTAGGTGGCACTAGTATTTTTATCACGAAATGAGAGATGAGCACTAACACTAAAGTAAAAATATTTGATAGGAAATAAAAACAACATGGTTTTGAGCAGGTTGTTTGATGGTTTTTCTTCTAACATGTAAACAGACTTGGGTGTGACAATCGTGATAATAGTAATAAAGTTAAATAATATCATACTCAAGtttatattatattaaataataataCCATTACAATTAAAAACAATAGGGACATCACAACGTTTCATTGCAATGTTGAGACCCTTGTACTTGTGAACAAGCTTTATAGCCCTTATTATCGTACTTTGTACATAATGTTTGAGGTATAAAATAAAA----TTCAACTTTTTCCA--TACATACAGACGTG-AGATCATCTTGATATTTTTCTCTAATTTTATTTCTTTTGATTATACATGCATAATTGTTGAAACTATGTTAGGGATATTTAAATGCTCTGTATCTTGCATTCTGGAGAGAGACAAAGTAAAACA--AAACTTGTTTCTTGTGGCAGGTTAAATG-------ATCACATTTATATGTTACTTTTGGTGAAATTATGTGGTATACTTGCTGCTTAAAATCTGTTTTCTTAATACT----TCCTAAGCAGGAACACATTGAATAAAGTCTATTT-AAATGCACATCAAGTACAAGGGTATGTGGCTGAATAAAATTGTTGATAAAGGCAAATGTGGTAGTCTA-GAAATAAGTGGTACCAATTTAGAATAAAATTTGTGATAACTAAATTAAAATTATCCAAATGTGCATTTCCCTTATGTGATACATTTCTAATAAAAACATTTTAGGGGAATTTGGAGAGCCTTAAATTGGAAGATGATAAAATTTCCATTCCATGTAGCTCAGTGGAAATCTGACCCAGTATTCTTCATGCTCTGCCT-CAGTCTCAGACAGCTTCAGTTACTATGAGTAATTGTAACCACGGCAACATGACTGGGAATAATTAATGAAGGAAATTCAACTTCAAAATCTGTAGCGCATTCTAAATTACAAATATTAGAATAATAACAATGCTGCACACCTCGTCCTACCTTCGACTTGATGGTAATAATATT-CTGATTTATAGTTGTAATGTTTTCATACATATACATATATATGTATATGAGAAAGGAAAAAGTAAGTTAATGTGTCATCTTATTAAATCTATA--------CTGCCTAAGTATCTGC--ACTTATAAAA------------------TATATGTGCAAACATCAAAGGTTCTAGTTTGTGAATT-------AGTCTATTAGAGTGATAGATCACTTGA--------CTGCAGAACCCGTATCTGCTA-------TACACTAATTTC---------------TATACACTAATTTTATGGTATTGGTCAGTCATTAACTATTCAAACAT--CGATTTTTCCAAC--AAAATGATGTTGCTGTTAATGCTGCTAACTATTACACTTTTAGAGAAAACAATCTAGAAGTAACTATAT--------TTGGTGACCACAAAGCAAATAATAAACTCTCAACA------AACAGACCCACTAAGAAACACA
s HiC_scaffold_1 143353297 1551 + 233722169 tgatataaaaatttatttttcctgatatatataattttctgaacCATTTCATGCAAGTGCCCAT----------TCCTGTCAGACTCTACTAAGAA------TTTTGAAGAATGCAATTCAAAGAATT-----CACTCTTATGACAAACTTGAGATAGATGGTGCCAGTTTTGTTATTACTAAGTAATAGATGGGCAGTAACACAAGGAGAAGCACATCC--------------------------------------------------------------------------------CAGccat-------------aagataaaaaata---------------------atttaataa-------------------agcaGTGGTGACAGAGCATTGTGGCACTGTAATTCTCAGGACTTAGTGGCTGTGAGCCAGCTTTctcacatttctttttataactAG-ACTTaagg---gaaagataaaaaaaaaaaagttcaagattCTCTACCTATGTGCAAATGAGCAGGTTATCAAGGTGCTTTCCTTTAATTTCATTTCCTCTGGGCATACAAGCTTCCCT-TTAAATAGACATTTGGGAATTTGAACTGCTTGTTAGTCTACATCCTtgaggcagaaaaagaaaaacataaaacttatTCTCCAAGCCAGATACCATTTTCTGGTATTACAAATCCAAGTTACTGAGGGTAGAATTATATGGTATCTTTGTCGCTTATTATCTGTGTCCTGAATACTCACATACTAAGCAGGAATACACCAATTGAAGCCCATTTTAAATTCATGCAAAGTATCTGAATATGTGGCTGAATAAGGTTATTTATAAAAGTCAAGATGCTCTTGTGCAAAATAAGCATCACCAATTTGAAGtgcatttt----taaataag--gaaattagctaaatatatattttacctaTGCCATATGTTTCTGATGAAACCCTTTTAGGAGAATTCAGGAAGCTGTAAATTGGAAGAGGACAAGGTTTTCAGTCTGTGTAACTCAGTGATAATCTGACCCAAGACTCTTCATGCTCTGTCTGTGGCATCCGACAGCTTCAGTTACTATGAGTAATTGTAACCAAGGCAACATGACAGGGAATAATTAATGACTGGAATTCATCTTCAAAATATGAATAATgttctaaataataaatattggaataaaaacagaacctCACATCCC-TAGCACCTTCAGCTCTCTTGAAACATTTCCACTAATTAACAGTTGTGATATTGT-GTGCAGGGTGACTGACGtatatatcagaaaat-aaaattgagcGAAAGTGCCATATGATTAAATGTCTAGTAAAAACCTACCTAAATCCCAGTCAATTCATAAAGAGATAGTTCccctttttctatttatttgtgccTCA------CCAGGTTGGAAATTTGGGGAAAGCTTTCTATACAAATAGGATATTAGAAACAGGATATGAGAAAGCTGGATTTAGTGGTCAGATTGCCTTGGTTTTAGGTTGCATCTCCAATCTTCACTAGTTTTATAACCTTGGGCATTTATTAACCTTTCtaaccttctgtctctctcaatgGAAAGTGAggtta-tattaatat-----attaatatagttGTTGAGAAAATGACACAGAAGTATGTAAGTGACGCAGATCAGTACCTAGCAATGGAAGGCTAAGCTGTCAATAATGGTTAGCAGGTCTGTTAACAAACTCA

a score=55659
s chr3           156223838 3908 + 160039680 [encoded data, 4341 characters]
s HiC_scaffold_1 143370300 3938 + 233722169 [encoded data, 4341 characters]

a score=29599
s chr3           156237879 1333 + 160039680 AATAAGCTACATGTGCCCGTGTATCTGGACACCTGTAAAGATAAT-CTATTCAGATATTTAATGCAGGCAATACAGTATTT-AAAATATGGATAACACGCAAGAAAATATACTTCCAACATAGAAACACACTTATAGACACATACTATAA-AATTTGTGATGTAAATTTAACAGTTTTGC--AATTATCAAGTTGCACTATGTGTTTCTGAGTTATATGCAGGGGCAAAGGTTGTATTATGACTCCATCACCTGCATTCTTGCTTTATGTTACATGACAGTAATGATTGG--CCACTGCACTGAACTTGTTGTCTTG--------------CAACTTTGGAACATTCCAGGATAATGCTGAAAATAAAATCATAGCTTGTCAGAAAAATCTAACCATGGTTTTGTTTCTGACACTGAAGTGAAATAAGAATTTCATGTTATTAGGGCAGATGACAGTTCAATCCTGGGAAAGCAAAGGATTTTG----------------TGTATTATTTAATTTATATGAAATAGATGGGCTTTGGATACCCTAGCAGCATCACCACACAATATAATAC----CTTTAAGAGTTAACTCTTGCCATTATT----GTTGAAATTATTAAGGGCAATTTCATGGTGACTTTATAAACATTGTTTAGTGATGCTATGACAGCTATGTCATGTTGTTTTATATATCACTAAGACAGTCATTTGACACAGCATGAAACAAAGTATTATTGCAGGGTCTATGGCAATACACTATTATTTGTTTAAACTTCTTCCTACAAGTGATGTTTTAGAAGAAAGACCCATGACCTTCAGAATCTAATATTCTGAT-----TGTAACACTGATACTACA-----------------------GGGCTGAGTGATTTTCACCGGTTTTGATCATATTTGCTACAAAAATATCAATAATATTTACCTTTCAGATTTATTGTCTTTATGGAAGTCAGTGTGAGA-TAGATTTTGCTAGCTAAAAAGGT-------------TCA---TTGGTGAGTGTTGAGGTCAACTGCCTCTTATTCCTGCTGCAAGATAGCATAGAAGCACTAAACTACTAAAAATCAAGGAAACAGTGGTATTCTTAGAGATGTGAATTTTTGTGCTGAATCAAAAACAAATATAGGCTATTTTCTCATAGGAG----AAAAAAATTTAAAC--CCCTATTATGATTCCTTTACCATTTGGAAAATATGCAAAAACTATCCAAGAGGGCCTTGTATCTGT---CAATAGGACAT----------TTGAGAAAACATAAA---GtaaatttaaaattaaataataaCTACATGGGAAAGAAATTCCAT---------ATAGACTTGTTTTCCTTGAAAGGAATCTCAATGTATA-CATTCAAAAGAATATCAGCAGGAA--TAGGGATCACATAGTCAATTCTCTGTCCTCCCATGTC
s HiC_scaffold_1 143387252 1411 + 233722169 aataaattgtttctgcatgtgtatttatgca--tgtaaaattaaaatttttcaggtACTTGAAAGAGgatatatgatattttaaaacctGCATTGTCAGTGAGAAAATAAACTTCCAAAATGGG--------TATGAATACATGGTATGACAATTTATGACTGAAATGTGGCATGTTTGCCCAACTATCAAGGTGTTCTACAAGCTTCTGAATTATGAGTGGAGATAACGTTTATATTAGAACTCTATCATCTAGAATTCTATTCtgtattttatgaagaaaaatgttaGTCCCACCGTGTTGAACATAT-GCCTCAAAAAGAACTGGTATCAATTTCTGAAGCTTCAAGaataaagtgtaaaataaaaatacaacttgtCAGAAAAAGAGAGC-ATAGCT--GTTTGTGATCCTGCAGCAACATAAGAGCTGCATGTTATTAGAGTGGATGACAGTTCAATCTAGTGAAAACAATGGCGTTTGAAAAGTATTAGATCTATGTATTATCTATTTTACATAAAACAGATTTTTCACCAATATACACCCAGCATGGGTACACA-TATAACTTAACACTTCAAGAGCTAACTCTTGTCATTACTCACAGTTGAAATTATGAAAGGCAATTTTGTGgaggctttaaaaatattttaaaatgactgtaTGACAGTTATGTCTTATTGTTTTATATATCACAATGACAGTCATTTGACACCGTGTGAAACAAAGTGTTATTGCTGGGTCTACTACACTACAGTATCATTTGTTCAAAGTCCTTCAAATACATAGTATTTTAGAGGAAAGAGTCAAGACTTCCAGAGTCCAAAGGTCTGACTTTGATTTAACTCTGCT-CTGTACCGTTGGAGAAGTTCAACCAAGTGGACTGAGTTCTCTGTACTGCTTT--GTTATGCTATCC------ATTCCAATTATGTTTAGCTTTCCAATTTACAG------TAGGGATTAATGCGCTAGGACATACTACTGTCTGTAGAAATATGTAACACACCCTCACATTGGGCGACATCTCAGATCAACTGCCTCTTTTCCTTCTGGCACAACTTCACAGGAAGGAAAAACT--------TAATGACAATAATAATGATCTTATGATAGGCAATGTATGCACAGGATT-Aagctaaatat----tatttttccacagaagaagcaaaaaaatgtTAACTTTCTTATTTAGGCT-TTTGAGCATTATGGGACTAGG-AGACAATCTCAAGGAGGTCATTTTGTCTGTTAATAATAGAACTTCAGGAAGATGCTAAGAAGTCACAAATACATATATTCAAAGCTGAGTGAGTATTATAAGGGCAAGaagtcagattaaaaaaaaaaagctgtgtcattcctggaatgaat-tcaTAGTACAGCTCTTCAAAGAACTGCAGTAGGAAACTTGGAAACAATCTGGGACCTTTCTGTCCCCACGTATC

a score=30393
s chr3           156251583 1678 + 160039680 CACTTTTCCCATCTGCAAAGAATCATAAGTGATCTTATCCTTTGGGCATTGCAAAGAA--CAAAGGTAACTAATG---GTGTCCACCTGAGAACATGATGCTATATTTGTCAGTTCCCCACACCCATCCCATAATGCAGCAGGCTTGGGTTTT-ATAGTTTTGTAAAGA-------------ACTCAGTTAGTGAATTTAGGTCACTTAGACTAAGGCACCA--------------------TTTCAGCAGAATATAGGCTAATGCCTTTAAGTAAAACATTTCGTAAATATGTGCATAATAAGATCCATGTGTCTGAGC-TGTAGTTTGA--AAGTAAATCTTGAGTTGTGAGCATTTCCCCAGATGCCC---AGTTTGTGTGTCACATTTCCTGAGAATAAACACACAAGCAAAGAAGTCCCAGTAAAATCAAGAAGTGGGATTGGCTA-CAGGAAGGTAAATGAGTGAGCTGATAG---------CTAAAGCTTTGTGTAGGCAGGGAGGAGGGTGGAATGA--AACAGAATTACGACCAGAATTAAGA-CCAGAAGACTGTAGCAAATCACA-GCAAAGAGTGAAGGAAAAAG-CATTAGTCCAAACGTGGGCATGGATGGACAGACACAAATAA-GGAGAGAAAGGGAACGTCTGGCCTTTGGTGC------------------TTTAAGTGAATGCTGGGCCATAATGTCTCCAAAGAGACCAACTAGGCA--GACCATATTTCTCACAAAATAATGATATTAAACTCTCCACAAACCACTGAGAAAGTGGGAATCCATTCTTCGCTGATTCTATTCTTTCATTTATAGCCATGAGCGTAACAACTGTACAGTCATGTACTATTATACCTCATTCCTTCAGTCAAAAGTCACCATGCATTAAGAAGGTG--TTAGGCTCAGTGCATCCACTCTG----------GGTG---------------------CCCTCTTTAAGCTAACCATCCTTTGAAAGAGACAG---------CCGTGAGGCAACAATTTAATGAGCACTGTGGATATGGAACAAAAATCAACTCCTGCTTTGCAGGAGACTGGAAACATTCGATGAATAAATATTTAAAATTAACATGGGAGGAGATTAAAAAGAGCATCTGCTAGGAAATCAGGAATCCAGGAAAAGATTGGCAGGGCAGAGACCCAGCCAAGGGAG--CTGCATCCGC-TTGCTGACTGCAGACAGACACAGCCAGAGGGCTTGGACCACTTTTCTTATCATAATCATACACACACACAAAAAGAACAATAACAATACACACAAATTGTAGGATCGTAAGCCTGGATATGAAA--TGCCAATATAAAGCAATACATCTGGCATATTTG--AAGAGACTAGACTTGGAGATGAT--------CCTTGTGGTCACTGGAGCTTGAAAGGTAGCTCTAGAATATTTCAGCTGCTTATTTTTCCATCCTATCAGATTTAGTAAAATTACAGGCTGAATACTTAGCTTGTCTATGCTATTGCAAAAATTAATTCTAAATATTAAACC--AGAAGAGTGTTGCAATGTAGAGTAA-----GCA------------TATACCGATGAGAATAGCATCTGCAGTATTGCTTCAGTGTGATAATCAATATCTAGTTGTCTAGTTGGCTCACTAATTAAAGGAAATAATCTGAGATACATTTGTGTCTA-----CAAGAGACCACTGCCATAAGTAAATTGGCAGAGAACTAATGAT------------TGTAAACAGTCTAAGCA--TGTTATAGAA--TAAGATAATACACAGC------------AACATTTCTATATTAGATCTGAAGTACAATtgctgcgaaca
s HiC_scaffold_1 143392128 1784 + 233722169 CATTTTACTCTTGTTTAGAAAGTAATATAGGATTTCGCCCATTATGTGCTCCAAAAGATACACAGGAGACTAATGAATGTGGC------AAGACATATTTCTATAATCATTATCTTTTCTGATTCTTCTTGTAACCCTGAAGATTTAGATTTTTATAGGTTTGAAGATATTTCCAAGACTCAACACAATTATGTAAATCAAATCACACATTCTCAGGCTCTGGATAATAGATGTACATGCACTTTCACAAGAATTCAGGTTCCAAATTTCAAGTAATA-GTTTAGT---TACCCACATGGTTGGAACATTCTCCTTGACCCTCTAACTTGAGAAACCTAATGTTAACACATGGAA-------CATACGCACTATAACCTGAGAGGCACATTTTCTGAGACtaaaaagatag----agaaataaCAGTAAAAT--AGCATAGGGATAAGTAAGTTGGAAGCCAATTcaaaaggctaaaaaaaaaaaaaatcaaagtcatgGTTAAAATAGAGATAGGTTtcagtgagaaataaattta-----agaatacaGAGTCAGAAGAATACAGCAAACCACATAAAAAGTGTGTAGGAAATATTCATTAGGTCAAACATTTATGTGAATGAACATTTGTGAAGGACTAAGAGAGCAGGAAATCCTGACCATCAGTGTATAATCTGCTCCATGAGATCTTAATGCATGTTCTAGTCAGATCTAtctaaagagacaaagaaagaaatgatcattttt------------tGGTATTTAGTTCTCTTCAAACAAGTCATTTAATACCAGTGGATCTCCTGCT-atgttaaattgtttttta-acccACCAGATTTCCAATTCAGTCATCAggtgcta---------atttttaaaatcaaaaatcaCTGGGCATTGACAATCTGCATTAATCTCA-TGCTTAGACTCTGCTGCTAAAGAGATGAGAAATGAAACTCAACCCTTTCCCTCTTTGAATGAGTGGTTCTTTGAGAAGGAAAGGCTTGTGAATCATGAGGGAGGAATTCAAGGAGTGCTACAAACACTACAAAAACTCCAATTCCTAGTGTACTGGAGACTAGA--CAGGtgatgaataaatatttgaaattaacaAGAGATGAGATTAAAAAGAACATCTGCTCTGAAATCAGGTATCTAAGAGAAGATTGGCAC--CAAAGGAGCTACCAAAGGAGGACAACAGCTGCGCCAATGACAGGTGATATAAAGAACCAGAGGGCCTGAACTAGTTTTCTTACGATTGCCa----------caaaaagaacaataataataaaagcaaatggCAGGGTCACCAGCCCAGATATGAAAATTACCAATAAAAACTAATGCATCAGGCATATTAGGAAAGAAATTTTCTCTGGGAATGACTCATAGACCCTTGTGATCACTGAAGCCTGTAATATAACTCTAGAATATTTCAGCTACTTATTATGTCATCCTATCAGATTTAGAAAAGCAACAAGCTAGATACTTAGCCTGTCTGAGCTATTTAAGAAATTAATTCCAATTATTAAGCCAAAGAAAACTGCTGCAGCCCAGCGAAAAGCGTGCAAACTTTGTAAGTCAGAATGCTGACAATAAAATCTGCAGTGGTGCTAGAGTGATATAATCAA--------TGTCTAATTGActcaataattaaagaaaatagtcTGTCGTATATTTATTTCTATAGATCAGGAGTCTA----------TAAAAATGCAATGAATTTATGTTTGGATTATGGTCTGTAGTCAGTGTAACCATTTGTTAGAGGATTTAAAAAGTTCAATAGCtgctttaaaaaacatatttctattttaaatcagGATTCTAGCTGATTGGCACA

a score=12869
s chr3           156262865 1174 + 160039680 ATGAACTTTCTAAGAGCTTCGAAGAAGCCCGTGCTATAAGAA----CTAGAAGCAATAGATCAGCTTGGGAA------------CTTAAGTAAATAAAAATAT-------CTGAAATACCTAAATAAGAGTAACATT---TTGGCTTTTGAAGATGTAATATGTATCAAACAAGCAAATGCTCTATAGGCTACTAGTGTGCA----GTTT-----TACACAATAACA-------ACCAGTTCTGAGAGTCTCCACCTACAACACAGCATACCAT---TCCAGTGCATTCTTACATTGC-----AAGCAGTGTTCTGTGGTTGTGACTATTATTATCAAACTTTGCTGACACACGGAACCTCATCCTTAGAAGGCTTAAACACTTTATTGTAGATTCATAGA--CACTGACCTGGAGAACCATGTTACAATTGCAGAAGTCTCATTACAAC-ACTGCTTCCTATCCCATTTTTACATCTTATGCTTAAACTCAAAGGAGAATATGGATATTGCA------------------ATTATCTGTATTTCTGTTGTCTCCCTGGGATCCCCCTGTATTGTTAGCATAGCATTCAGGGCAAATTAGTTAGAATTCTTTTGGTAGCCCATGGCCAG-GACAGGAG----------------TTCTGATCTGTTCTCCAACCTTGTGAGTTTTTCAGGTCAGAGCTTATTTGCTACAGAAAATGTTGT-CAGTACAGAGTTAAA-ATATTGAGGCAGAATATGTAGCTGTTTTCACAGAACTAACCTTTCAGAGATTGAGATCAATGCAGGCAGAAGGCAGATACACAATTGACTAATGATGACCAAACAGAGTAATCAAGTCACTCATCACAGAGGCTCTGTGATAGTCACAGTTAACTGAAACCAA----------CACCACCCACGCTAAGGCC-------AAATATTCTGGGACGAAATACTTAAGGGTTATAAATGTGAGCAGCTTAGTCAAGATTTCC-TAATAGAACATAGAGTTTAACTCTGAC-CACTTTTCATGTATCTTTGATATATCTTTTCCAATTAACAA-----------------TATAACAGTAATATA-AGACACAATGAGGAACAAGACATCT-TTCATCTGTCTT----TGGTGGG------------ACCTCTCCAGACATTGTGGTTCCATTTAGCATATAAA-------TGCTAGCTAGA--AGTTTAGAGGAAAATAATAAATTTATTATTCCTCTAAAA--------CTAATTAAGTAGTATTTATTAC------TATCTTAATATGATAAAAATCACTTTTTAACTTTAGa--ttattatttttt
s HiC_scaffold_1 143395196 1281 + 233722169 ATGATCTTTCT--GAGCTGC-CAGAAGCCCAACCTATAAGAAACACCTAGAGAAAGGTGATTAggttgaaaaaatatgtatacacttaaataaacaaaaaaatatatattctgaaat--ttaaataatagccactttccttttgcttttgagTATGCATTGTGCTTCTTAC---TGAAGAATTTACATGCTAATATTGTATACCTAGTTTATTAGTACTAAATATCTCATGTGTGTTACCTCTGAGCTTTTGTATGTTcattataatacataatatattcattttat-ctaACATAGcttataaaatagtattataacaTAGAGTTTA-------CCAATTTTCCAGACA-ACGGAACTT-ATGCCTAgaag-tttaaacatttt-tttcaggaaCAAAGAGCCAGTAAGTGGCAGAACCAAGTCAAAACCAAGTAAGTCCAACTACAACTGCTTTTTTTCACCCCTTTCATAAATACTGTCCCAAAACTCAAACCAGACACTCAATTTGGCATCTCAGAAATGAGCCTACAGCAAGCATATTTCT--------TCTAcgatatttttcctttcctaa------gcTCAAGA-AACCTTGAGAGAATCTT------AGCCTTTGGCCAGTGTCAGGAGATACAGCTAGAGGATTTCATGGGCTGGGCT---GGCTTTGGTGATCTTCAGCACTGAACTTGTTTGCTAAAGACAATGTTTTGCAGCTCATTGTTCAATGTGTTCAGTTATCATATGTGGTCAATCTTCCTGAGTTAAAAGTT---AGCCAGAGAATAACATTGTCAGAAGCCTGCTACCCAATTGACTAATGGTGGGCTAGCAGATTAATCAAGACAATCATTACATAGATAGTTTGATGCCTACA-TGAACTGGAAATAGGGAAAATTTTCTCCTTCCACTTTTAAGCTAATTTGGAAAGGCTCTAAGGCAAAATACATAATGGTTGGAAGTCTGGGTAGTTTAATGAAGAGTCAAGCAATAAAAA--AGGGTTTGAATTTACTGCATTTCTCATGT-TCCTTGATATA-ATTTTCCAATTAAAGAATAATTAACTTATAATGTGTATCAATAAtgcagaaacacagaga-gaatgAGACTTCTCTTCAGTGGTCTCAAGGTGTTAGGCTTAATTATAACATATATCTaagcattgt--tttcatttaatatgtAAATTGTTACTATTACCTATACCAATCTCTTGAAAAATGACAGAATTATTCTTACTCTGAAAGAGTTGggtttttaaagtaacatttattacattaaataaCTTCAGGTG-------TAACTCTTCAATGTTAGAACATATCATATTTT

a score=10791
s chr3           156267125 1155 + 160039680 CAAGAAGAGATGCTGAAGCCAGGTCCAGCTGAGCCTCACACAATGGTTCTGCCACACTTGTCAAAGGCCACTGACTCTACTCAGTCTTTGGATTCACTTGTGCTTACCCTGCCTGCCTCCAACATGGCTGCCCTGCTGAGTGTTCTATGGCATTAACCCA------------------AGTTAATTCTCTCCACTTCTC---TCTGAACTTCCTTATACATTAATGCTTAAATTGCATTTCTACACTATGATTTCCATATGCAACATTTACTTTTGACAAAG-------------------------TGAATCGACACATAACTGTTGTTATTT-ACCACTCTTGCTGACGGGGATTTGGACCTGTTTCACCTCACTTTTCTTGCTATGACTTCTTAAAGTATTCCTCACATTCTAAACATTTATTCCTCCTTGGTAATGTCCTGAAAGTTAAAGCATAAATACAACGCATTCAAAATTTACTTCTGATACTATTTCCTCTATACCTGCATTTTCTTGCCTTCCT-CCCACATTGCGTATTCCTAGCACAAACTACTGAGTTAGCA--------TCAACTATTTTAAGCCATACTGCCCACCCTTGA---ATATAGCCGTCA-TTTCTCTAAATGATTCTTCATATGAATTATGCTCTGTTTTCTGAACCTTCTGCTTCTACTGTTTTGAATCAGTCCTTACCATACATGGCTGCTGATTTTGAATACACTGCTGCTATAGGCTCTGGTAATCAATATCTGCTC-TCTCGATTTGGCCTTTTCCTTCCTTTC-TTGGCTGTGTTCCAGAA---TCCTCTACTGAATAAGTTACACTATAAGGCCTTGTGCAAATATGCTAAGTAGCCCCTGCACAGCTTCACAGCTCTTGACCCTCGAGGAAAACCTTCACCTGTAGAATGTTTATTCATGAACCATTCCCAGTCTCCTTAATCTTCGTCATCTTTGAATCGCTGATAAATATCACTGTACCTTGCATAATGGCTAGCAAGTGAATAGGCACAGCTTACTAATGAATGTCTCCCATCTTGATTTAATCTTTCCCTGTGTTTGCTCATTTTACTATGATTTATC-CTCCCTGAT---ACT-ACCACTGCCTAATGCCTTTCACTGGAATCTG----GGCTGATGACTGTCTCCTTA----ATGGGTCATTAGACTGTAGAAAGGACACAAAACCAAAGAAGAGGGCTATGTGGGTTGTTCTTTC
s HiC_scaffold_1 143406122 1152 + 233722169 CAGGCAAAGCTG--GAAGCCAAGGTCAGGTGAAGATTATAAAAT--------TATACCTGGCTAA---CACTGACTCTGCT-----TCTGAgttcttctccttttatttcccttGAGTC----ATTTTTGCCCTTTT-----CTCGGTGGTAATGACTCATTCTTGAATGTTTACAAGAGCttaatctttctgcttcttccttcTGATGTTC----TACACAGAACGGTAACATAGATGTCTAAATAACAATTTGCGTAT--AACTTTTACTTTTAACAAAGCTTTCGATGGCTCACCAAGACGCCATGAGTTCACACATaaatactgacattttaaaaagctctatGACATAGTTTTGCA----TttcactttccttcccttcccaaaAACACTTGACCTATTCTATGCCTTGTAAATACTTACTC----TTGATAATGTCCTTAAGGCTCCACTGTACATAAGGCTCGT-AAAATTTTACTGCTGAAAGGAAT-CCTCTATGAGCAAATTCCCCTCAAAGCCTGTCCACACTGTCAGTTCC-AGTCTAAA-TGCCAAGGGCTCAAATCTCTCTCAGCAACTTTGAACCTCAACACCTGCCCTTGGTTCACTCAGCCAACACTTTCTCTGGATGAGACT------GAGGCGTGCTCTTCTGTGCTAACC--AAGCTGCAG--GCTCCGACCCGCCACATGGTCTGCATGGCTTCTGACTCTCAGTCTCATGTTGCCTTTGACT--GATACTTGGT-TCTGCTCCTCTGGAATTAACAATTTCTTGCCTTTTAGCAGCCACACTTCAGGAATTTTTTCCAGTGATGATGCTACGTGTTGATATGCTGGGTGTATATTCCAAACAGCA--TGTTCAGCT---CTGATTTTCACCTC---AACATGTCTTCCCTTGTTGAATCTTAGTCTACAGTCCATTCCCAGGCTCTGTAATCTTAGCCATCTTTGAATTTCTAACACGTACCAAGGTAAGCGGCACGACAGTTACTGAGAGGGCAGATACAA-----GAGTAAATGTCTCTCAT-TCCATGTACTCCTCTCCTTTGCTTTCTCATTGTATT-TGATTGGCCACTTCCTGATTACACTAACCATAGCCTGACTTTTCCACCTACAGATTATAACAGAAAGTGCTTCTCTTCCTGGAACATGGCTCCCTCGCCC------AAGAAGC--AATCAGAGAAAAGGAccatgtgaattttcttttc

a score=8206
s chr3           156270687 273 + 160039680 CATAAAGAAGTGGCTGTTATGCTTTAAATTACTTCTATTGTAACTTAATTTGCAAATGACTGTGTGAAGTATTTTTATGTGCTTGCTATTAGGGGACTGAGCACAAATGATTTTCTGTTCTGGGAAGCATTTTGAAGTACTTCC--ACTTCATGCTGTCATTTACCTGTAGTACCTCTTCCA-----------CAGAAGGAAACACATAGGTACCGTGGCACACACACATTC-CAGACAAAGAAACATTTGATATCGT--AAGTGTTGGCGTTATGGGG----TTCTCATGGA
s HiC_scaffold_1 143407825 287 + 233722169 CATAAAGCTTTGG-TATTATAGTTTAAATGACTTGTATTGTTACCTAATTTACAAATAACTGCAAGAGGTATTTTCTTGTGCTGGCTGTTAGAAGCTTCAGCCCTAGAGATTTTCATCTT-----AgcagtttaaaataatttcttagtcACTGATGATATTCACTTCAATTACTTCCTCCACATAAAATgtgcagaagaaaacacaaagttCCTGTGACATGTTGACATTCTCAAGCAAAGGCACATTTGAGGTCCTAGAGGTATTGGTAGTATATGGCATTTGCACATGGA

a score=37196
s chr3           156271434 1245 + 160039680 TGGCCTTTGCAAAGTTATAGATATA--CTTCAAAACTCCATAAAGAAAAGCCAACTCCTG-CAATAGAGTTGGTTTAGAAGA-TGACTTAGACATTAGTCTTGGCTTGCCATGCCAGCTCACCCCCAGGAGAAGAA--------TGGGTTAATGATGCATCCTTCACACATGGAGGTATCTCCAATGACTCACATTTTTTTTCTTTTCAGAAGAGAACACTCATCATCCACTGAAGTCTGGCACATATGGGGTCAGAGAGGACAGCTGCTCTGTG-CATGAGAACATTTAAAAAAGAAATTATTCCTGAAGTTAAAAAGCTGCAAAAATGTT-----------GAGAGGCCAGATAA----TGGTTATACAAA---GGGATTCAGCCAGTATAAGACACCAAGAAGCCACTCATGCTCCTCTCCCTACTG-ATTTCTCGGTCTGGCTAGATTAAGTCAAATATCCTTCATGCAG----GTGATGACTTCTGGGCTCCACATGTGACCTCCTTTTGTTTGGCCAATATAAATGTTAATAAAGTAATATGCAAATTGAACACATCCCAAGATCTTGTCCATATGATGCCAGCTAAGGTCTGCACAGTGCATTAGAGGTAAATGCTGTTTCAATTCTTCATCCCAGAATGTAGCACTCATCTGAAATAATCGCTTCGGTATTAATAAGGGCCCTGTCATGGCCAACTTGGGTTTTCTTAGCTGACATTCAGAGAGGTCCATGCCAGGGTAAACCTGTTTTGTAAATAATCATCA-GCCATCCAAGGTGAACATAGCAAGCCAGCTCTTAGTCA-TTTTAAATGACCTGTTTGCACAGTAAACTTCCCTCCTGCTGGGGAAAGGTTACAAATTTTCCACAGTCATTTTGAATTTCTTTTTATTCCCCCATTTTATTTTGCATGGGATAAAACAGG---TTTTTTTAAATAAAGCTCCAAAGAAAACAGAAAAATAAAAGGAGTTCAATTATTGATC-AGGATTGCTGATGGTAGAATAGAAAGGTGACTTGCACAGATTGCTTCTCAGGTATCTTTAATTGATTGAGTCATTATTTTCTGAAGCACAAAGGAAAATT---------CTCTGCTCTGCCTTTCAG-ATCTGGG-------GTGAGAAGCTGTGTTGGACTAGTTTCTTTCAGACTAGCTGAAAGGAATAGCAGAAAGGCTTTCTTTC---AAAATATTTGTTTTTAGCTTTTCCTTTAAAAATGTGTTTAAACAAATACCAAGGCACCCCTCGAGGAGTGAAATTATTACAAAGAGCAATGCATAACCACAA
s HiC_scaffold_1 143408095 1227 + 233722169 TGGCATTTGCA----CATGGACATAGCCTGCAGAACTTTTGAAAGCAGAATCAGGTTCTGATAATTGAGTTGTTTCACCAGGCTGCCATCCTCACTAGTGTTAGTCCCATTTACTGAGGCCTTAGAGGGAGAAGAACAATGCCTTGTACTTATGCTTGACCTCTCATGCC--AAAGAATCTCTACTAGTT-------------TTATCTACAGAGATTGTTCACCCACAGTTGAAATCTTAGTC-TGTGCTGTCAAGTATGCTGGCGACTTCGCAACACAATAgcatgtagaaaaaaaaata------------aaaaactggaaaaataacttCTCAAGTGAGAAAGGCGGGAAGAATTTTATTTAGGCAAAACTGACATTTAGCCAA------------------CTTTCGTG----TGTTCATACTTTATTCCTAGACCTGGCTGGATTAGGTCAAAAAACTTTGATGTAGAATAGTGACTTCTTCCACGCTCCACCTA--ACCTCTCTTTGGTTGGCCAgtgtaaatgttaa---aataaaatgcaaacaaaatacaTCCTGTGATCTTATCCTTTGAATGCAAGCTGAGGCTTAAGCACTACGTTATGAGCAAGCAGTGTTCCTGTTCTT-GCTCCAGAGTTGACCACTTGTCTGAAATCTTCCCTTTGGTATTAACAAATGTCTTGTCACGGCCACCTTGAGTTTCCTCAGAGGTCATCCAGAAAGGTTCA-GCCAGGGTAAAGCTG-TTTGTAAATAACCACCACCCCATTCAAGG-----------GGCCAGCACTTAGTCATTTTTAAATAAGCTGTTTGCACAGTTAACTTCCCGCCTGCTGTGGAAAGGTTAAAAATTTTCCCCTGtaattttggatttctttttattccctctttttctttcttatgaaaaaaaaaaaaaatacttttttgatGGAGCCtaaaag-----agagaatgaaagaaagctTGATTATTGATCTAGCCTTGCTGACGGTAGAATCGAGAAGTGTATTTCATAGATTGCAATTGAGGTGATTTTAATTGATTGATTCATTATTTtctcaaacacaaaagaaaactctGGGAAAGCTCAGTTCTGTCTTTTAGAAGCTGGGGTAAATCGTGAGAAGCTGTGTTGAAATACTCTGCTGTGGACTATTTGAAAAGCAcaatagaaatgttttctttcagaaaaaaatttgttttcagcttttcc--taaaaatgtttttaaacacatGCCAAGGCTCCCCTCAGcaaatgaatttattaaaaacagCAATGGACAACCACAA

a score=30775
s chr3           156279200 797 + 160039680 ATTATTAGGAAGTGAAAATACCTTATGTGTAAATCTGTTCTCACATGATTAAATCTTCAGTGAATGAGAGC---TAGTATCACTGAAGGGTGCTTCTGAGCGCAGACATGCAG-----------------GTTCTACACGTAATACAAAGAAATGTCAACTCACTTAGAAATCATTTAACTGTTCTTTCT---ACTCTATTCTCTGTGAATCCAGTCATAACATGCCAATTTATTAGCATAATAGAAAAGGGCCTGAAACTATGCACACAGGCTCTTTGTGAATTCTACCATTTCATTGACTTGTCACAGAGAACAACACATTTGCCATTTTAATCCATAGTTCTGTGTTTGTATCTGCAGTGTAGCAAGGTGGGAACTAATTAAGTATGAAATTACCTTATATATCTAAAGCAGTGCCCGCTCACCTTTAGGCATTTTGGGAATCCACCTAATGAGTTGTGAGTTTTGCTCCACAGGACAATCGCAGAGCTCATTAATGCTCATTAAAACATAAGTAGTATTCAATGGATTCAGCAAAAACTCACTGTATTTTAATGAGCAGCTGAGTTATCCAATGGTCCAAAC-CCTGTCATGGAGAAAATC---TAAGTACACAAAGAAAGTGGATGTCTATGAAGACACTAAGCACTGTGTTACTGCTTGTGGACACAACAGCAACAAAAGGAAAA-ACCACTCCCAGAAGTGTGTATCTTCAC-AACAAAACCAAATCTAAGTGGATGCTTTAGAAATAATATGC---AACAAAGAG---GGTGATTAGTAATTACCAATGTCAGCCTGACT-TGATTAGGGAACACTAGCAAGGTG
s HiC_scaffold_1 143430029 817 + 233722169 ATTAATGGAAAGCAAAACTAC--TATATTTAAATTCCCGGTCATATG--TAAGCACTCCATTAATGAAAATAATCAATATCCGTGACTTTTACAATTGAATATATGCCTGTAGTTATTTTACAACGCCATATTCCATACCAAGAGCCAAGCAATGTCAACTCTAATTAGAATAATTTATCACTTCTTTCTGATACCCTGTTTTCTTTGAGTAAAATCACAACATGCCAATTTATTAACGTAATAGTGATTGGTCTGAAACTACTCAGACAAGTTCTTTGTGAATTTTACTATTTCATTGACTTATCAGAGTAAACAACAAATCTGCCATTTTAAGCCATAGTTCTGGATATTTATCCATGGTGTGGCAGGCGAGAAACTAATTGAGTATGAAATTACCTTATATATATAAAGCTGCTTCCACTCACCTTTAGGCATTTTGGGAATCTACCTAATGAGATACGAGTTTTGCTTCACAGGACAATCACAGAGCTCATTAATGCTCATTCAAACACATGTAGTATTCAATGGATTCAGCAAAATCCCACTGTATTTTAATGAGCTTCTGAATTATCCAATGGGACAAAAGTTTGTCACAAAGAAATTCCTGTTAATGCA-AAGGAAAGTACAGGCCAACAATGATAATAAGTTCTG-GTAGCTACATGGAGATACATCTGTGATAAAGGGAAAATACTATTCCCAGAAGTTCTTCTCCTAACTGTTGAGAACCAGTCTGA---------TTTGAAATGGTATGCTGTACCAGAGAGAAAGGTGATGGTTCATC-TTAGTGTCATACTGCCCAGGGTGAGGGGGTATTAGGCATGTG

a score=28173
s chr3           156291139 1016 + 160039680 TTTACTATGGAAAAGGAAGACATGAAGAAATTTTCACTGGTTTCTGTGTG-GCCAGAGTATTAATAGGTTACAATAGCCTAGCAGAATCAGGTTCAATGGGATCTTTATCTCACAAGAGGTTCTTACTACATTGCTCACTG---------TAGAATAGAAATGAATTAGACATCAGATTCTATCTTCATCTTACAAAAAGGCATGATATTGCAGCATAAAGGGGCAAATTATATTTAAATAACCAGACGTTCTTAATATGACCAGAATTATGTAAACTCCAACAACCATCAATTTTCTAGGAATTTTAGTCTCCATGCTAATTCACA-AAATCAAGCACAATATATTTGCAGCTGGCTCAAATCTCAGCGAATCTTTCACAAGGAGATTTTGTTAAGAAATGTACTTGAATTACAGAAAAGCATGTTTTACCAAACTAGGCATTGCCAAACTGGTGTGGTTCCTTTAGTTAAAAAAATAATATTTG----GCAAATTCCAGTATGATCATAGGACACTCAACTCTCTGGCATCTTCCTCTATGCTCCACACAATCAACAGACAGATCTACATTTGATAGA-TGAGACTCA-----GACTATCAAAAAGAACATGGTTTGTG-AACCCTACAGCTGAAGTTTTCAGAAGAGTTAATAA---CAGTGGTTTACATTGGCAAGGAACTCCCTCCATT--TGAAACATGTTGTCTCCAAAGATAAAAACAGCAGTCTTG------TATATGAT-GGTAGTTTGGTGAAGCTTTGGTAGCCGTGTTCATTTCAACTTTCT-CAGATGGTGAATATCTATAT-TGTCTAGATCATTTTAGCAGGGTTGAAAAGGAAGAGACAATTCAAACCCAAG--AAGAAAACACACAGCCCTGTGTCAGTGTTGTTGAGTTAAGCAATTGAGTATAGTATTaaaat-gacatgaactgaata--ctgaaaaaaaaaatagaattgatttctcacagtttttggagctgaaaagcctaagaccaaatttcctaaaaattaagtgtctggttagggctaacattctcaaaga
s HiC_scaffold_1 143432601 1019 + 233722169 TTTACTATGAAGAAACTAGGTGTGAGGGAATGTCTAGTGGTATATAAAAAAGTGAATACATTAATAAGTTCCATTAGCATAGATGACTCATGCTCAA-AGGATCATTTTTATGGAAGAGATACTTATCATATTGCTCACTGACTGTATAATAGAATTTAAATGAATTAGACCTCAGCTGTTATCTTTATTTCACAAGTAAGCATAGTATTACAGCAGAAAGGggcaaattatatttaaataactcGAAGTTCTTAATATGACCAGAATTATGTAAATTCCACCAACCATcaattttctaggaattttagtCTTCATGCTAATTCGCAGAAATCAAGCACAATGTGTTTGCAGCTGGCACAGTCCTCCCTTAATCTTTTACGAAGAGAGTTACTTAAGAAATGCACTTGAGTTGCAGAAAAATATGGCTCATTGAACTGAGTATTGCCCTGCTGCTATG----CTCTccttaagaaaatgtttttaaaaatacaaattcctgAGCTATC-CAAGAAATTAAGCTCATTGGCATCTTTTACTGTG---------ATGAGCAGACAGATCTACATAGGACACAGTGAATTTCCCCCATGAGTTCCAAAAATATCGTGATTTCTATATTCTTACAGCCT--GTGTTCAAATGCAGTGATAAGGCTTGTGATTTCCAT------GGTACTGCTCCAACCGATGAATTTCAGTGTCACTGTGGATAA----AGCAGTAATGACAATATATACAATCAGGAATTTTGTGAAACCTTCTAAGACTTGTTTGTTTCAAGTTTCTGTAGATGACAGAGGTTTGTATATGTTTGAGTGATTGctggaaagaaaacagagaagagagaattcaacacaaaggaaagagaatatATA-TTCTAGGTAACAGCTAT--ATCTTTTCCATTAGG---ATTACTAGAACAAACTTGAATTAGTTAGCCT---ATAAAAAGTAGAATCCATTTCTCAGGGTTTTGGAGGGTAGGGACTTCATGGTCGAGATG-TTGAAGATTTGATATCTGGTGAGGACC-ACTTTCTCCTAGA

a score=10906
s chr3           156297798 319 + 160039680 AATAATCTTCAACAAATTCTTTCTGTGGCCTCATAATAAGGGtttaattttcatttaaaattatatttaaaGGAATAA------TCTTGGCTTAACTTTAACATCTAATTTGTTCT-------ATTCATGAGATAGAAAAATGTAGGAAATAATCACTGGAATGAGATTGAAGTCTTAAA--------TATGACTTTCTCTGGATTTATGGGAATTAGATTTATGTATATATTTTTCAGTTTGGTAG-CTGAATGACATTTTTCTCATCTCTACTGCATAGATCAGTAAATCTCACTACCTAGCCATGAGGCTAATAAGAAATGGACAGTAACAATCAAAA
s HiC_scaffold_1 143438428 334 + 233722169 aatatttttcaaaaaattcttt----GTCATCCTAATTCAGGGATAGGTTTCACTTAGacttaaa---gaagaaatcacataACTCATATCTTAATCTTAACATCTCCTTGGGTCTTCTCCATATTCAGAAGAGAGCAAAGTGAAAGAAATAGTTATTTCAAGGagtttggaaattaaaaataaagtgtgcGACTATCTTTGGCTTTCATGGAAATAGTTCAATGTGTGAATGTTTTAATTTGATAGGCTGACTGACACCTTTATCATCTTTACTACATTGATCAGTAACTCCCACTCCTTAGTCAAAAGGTTAATGAGAAATGGATAGTAAGGGTTAAAA

a score=59032
s chr3           156299325 2739 + 160039680 TTGTCAAACTTTAGAGAAAACCAAAGCATTCTTCAGCAGGCCAATGTATAAACCATCTGGCATA---AGAATAAGAAAGATGCCAAGAAATAACAAAGAAGAATCGTCCATGGAGAAAACCCTaaaaaacaaaacaaaacaaacaaaaccaaaaaaacaaaaaaccaaaaaaaaaaaccaaataaaaaaaaTGTGCACAATGC-AATG-GAAAGAGCAAAAGGCT-------------AAGTGTAACCTGTGTCTGAGGAAAATC-----------AATAAATATACAGAGCACAACT-ATACTAAGGTTGTGTGCATCTTCTTAGCCACA-----------CCCTTCTTAATGTAATGcac--accaatgag-atgcacaacacaaaacataaatccaaaagtcagctct------gcctttggatggtgatggtgggcccatatcagggca------ccaacatcaacaaatactacca-----gtgatagtgactgataaaataggaaaaggtcctgtttactgggaaccagaggacaaatgggaagagaaccgttctttttacttcat-------ttttctgtaaatttaaaacggctctacaaaaagaaatccatttTTAGATCATGTAAAAAATTGCTGTATGGCTTTATCTATCTCAGAGAAAAGTTTGCTAGTGTACAACCAGTGAGATGTTTGCTTCAATTGCTCCAGAAATTCTCCACTAATTCAAAACACTGTGTTTGGA-TATGAAACATGAGTCG--AGGCACCTGAGGAATTTCAAAGGTTTCCATCAGAGTCCCCAAGGTTCCAAAA----------ACACAGAC--AATCAAAC-------CTTTGTGGTAAGTTGGCAGTGAGAATGTAAAAATGCAGCCAAACTGGCTGTGTTGGCAAGCCTACCTTAGGACAGTTTCATAAAT-GCATTTGTAGAGTGTGTCAATCTGGATAGCTGCCT--GGAATTTCCTGCTACT-------------TGTATGTGTATTGCTATTT-----CTAGGGAATGCAGCTATCTATGATAGA---TGATTTCTAGGGAATGCAAGGGACAGCCTCACTCAGTTCTTCTTTACTTCTTCC---TAAGGCATTTGAGAAAGGGTAATAAAGATATTATCTCATGCTATGGAGTGTTG------ACATAATCATCCCTCCTGGAAGCAGGGTTACTCCTGGTGTGTCACTTTCAACAGAGCCACAAAGTCCTGCTGCAGCTGGCTGGTCCCCATTC-CTTTTACCACTCAGAAAACACTCAGTAGACATCTTTGCCAATGCTGACCATCCTGCTTTGTGTACTGAGATCCTAAACTGTGCTAATTACTCTGGCTGGAATTCAAAAATCATAGCTCCTTTGCCAGGAGTAAGACAGCGGTCCCTAGAATGCTGGGCGAGGGAGGGGGCTAAGGGGGCTCACAGCTTTCAGCTTATTAAGCCACCATGCTGGCCACTTCATCATAGAAGTCTTTATGCCCCTAGAAGCCAAGAAAGATTTATGGAGCTGCTTACAAATTAAAGGAGATGCTGAATAGGCAAGCAC--ACACTTCAGCTCTCTGTGAATAG--------------------TGCTAGG--AAAAAATAATAA-TAAAACAGTGTAAAACATACAATACCA-----CTGTGCTGTTCAACATGTGCAAACTTATGATTGACCTTGGGTTTTAGAATTTATAT-TACAGATGATTTTGACTCCTACCTGTGAAGTA-TCAAAG---CAATAGTAGTAAACTGTCAACAATCTTTAGGGGAGAAAAGTACATATTTCCCAATTG--CAAGCCCCTGTAAACTGCCTGGAtttgtttgtttgtttgtttgcctgcttgcttgtttgtttTGTGGCAATCTCACATGACAAAAAATAATAATAAATTCCACAAAATGACAAATCAATCATTTTTAATATCTTTTATCAGAT--------TCATTT---------CCCTTCTTCCTCTTGGGGGTGATTAATAAAGTTAATTTGG--TGTTGAAAGTGGCCTCTTTTCCTCCTTCTCCAA-AATGTATTTGAAGCCAAATCTTTGCTATAACTGTCAGAAATTTGGA-GTTTAAT-GATTTCCCTG-AGGTCTTAGCTCACTCTAATTCCCATTAATGGGTTGCAGTTAGTACAGAAGACAACCACCGTT-TTGTTATAACACAGCTACTCTGTGATTTGGCTAAAGGTTTGAGCATATCTGATTTTCTTAATACCCAAGTAAAATTAGATAAAAAGAAGAGAATTGCAAATTAGC--AGTGTTTAATTTAGGTTCATGGGGCTGCTGATTTGGGCTTTCCCACAGAGCTGGCTACAGAGGCCTGGCCCAGAAGCAGCCAACAACACCCCATTCCCCAGCCTTCCCTTTTCATCCTGTTCCAGGTTGAACACCCTCCTCTCTCATCTCAGAGCTTTGACCTCAGCATGAATTTTTCTAATTTTCCCTGTTCTCTGTTATTTTTGCT------GCATACAAGGCAT---TTATAAACTCCTTTATGAGAAAATATATAAATTACTTATTGAGTATTTAATATTTTGCCAAT-CCTGACTTACATGCA------ATCAAGTGAAGATGTGGTACTGCAAATGTAAATTACTCTGTCATCAAAAACTTGGAATTTGGCAGGAGATAAAACCTATGGAAGAAACAATGGCAGTCCAACAGAGG-TCTTTTCAATTAGATGCTGAATCATATACCAGGCAGAGTG-AGGCCTTAAACACTCTAAAACAAAGCTCTGACTTA-----------CGATGTAGAAACGGATTTAGACCATAATAGATTTCTGTCAACACTAAAGTTTTCTGAATGCTATCTTCAGAGAAGACTGTGAACATAGTAAATGGATTC--ATCAAATTAGGACAGTAAGAGCAGCGTGCTCAT
s HiC_scaffold_1 143442743 2758 + 233722169 TTGTCAAACTTTTGAGGAATCTGAAATACTTTCCAGTAGATGAATAGGTAAAC--TGTGATATATCCAGAGAATGGAATATTGTTTGGCATAAAAGGAAATAGCTGT-------------------------------------AAAGCCA------TAAAAAGGCATGAAGGAGATTCAAATGCA-----TGTGAAAGAAGCTGATGTGAAGAAGCAGAAGACTGTTATTTCTAACTAGATGTAAtccttgaaaaagaaatattggaAGAGTTAGAATTCATATGCAGAGTTCAAGGGACAGTTAGGACTT-TGAAACTTCTCTGATACAGTAATGGGAAGTCCATGTCAA---AATGCACTTATCAATTAGTAttagcaaaataatataaaa---caagaGCGAACTCTCACATAGCTATGGGTTTGATTTGAGAAGGATACGTCAGTGCAAGTCTTTCAACTGTAACAAATAC-ACCATTTTGGTGAGAGAAgtaaatagcaacaaaaaa-------tatattagaGAC-AGAAGATGTATAGGTAA--------TctttatatttcatattcaatTTTGTCATGAATCTACAATGACCCAAAGAAATAGAGTCTATTTTAAATCTGCATAGCACACAGGAATCTGACTTC-TCAGTCTTACAGAATATGTTAGTAGGGAACAACCAGTGAAATAATCCATCC---TTTTCCAGAGAATTCCTTCTACCATGAAGCCTAAAGATCAGACTGTTAATCACAGGTCTGCAGGGTCCCTAAGAATTCTAAA-----TTACCACAGTCGCCAAGTTACTAAAACACTGCTTCaaaataaactaaacaaaactaGACAACTCTATGATAAAGTGATAATGAGCATGTCGCAGTCTGACCACGTTAACTCCAGGACGGAACTTCCTTTAGGAAGGCTTCCTATTTTGTATTTCCAAAGTACATCAATCTGAATGATAGCTTCAAAAAATTACTTTTACTAAGAAGTTTCAACTTCATCTTTATTGATACTTACGTTTTATGAAACACAACTTTCTCAGTGGGAATTTGCTTTCTATGGGATTTTAGGGGCAGCTCC--TAACTCTTTCTTTATTCCTGCTGTACAATACAGATGACAACAAGGAATAAAGACATTACTTCACAGCTTAGAGTTTTGCTATCTATGTACACATGCCCC---AAAGCAGAGTCGTATTTAGTG-GCCACTTTTGTTGGA-CCCCAAAGACCTGCTGCAGCTGGctattcctttttctctcccacCATTCAGGGAACACTCCTAAGACATCTTTGCTAATGCTGACCATTCTGCTTTGTGTATTGAGATCCTAAAGTGTGCTAATTACACTGGCTGGAATTCAAAA-TCTGATGTACTCTGCCAGGAATAAGACAGTGGTCCCTGGGATGC--ATAGAGGGAAGAACCTA------------GCTTTCAGCTTATTAAGCCACCATGCTGGCCACTTCATCATAGGAGTCTTTATGTCCCGAGAAGCCAAGAAAGATTTATGGAGCTGCTTACAAattaaaagagatgctgaataggCAAGAGCCGGTATTGCATCTCCCTGTGAATAGAATAGGGAGCATTAGGTGTTTACTAGACTGGGAAGTGGCAAGTAAACTAGAGCAAATCACAGAAAGCCAGTGATCTGTAATGATCAGCCCCT-CAAAGCTGCAATTGATTTAAGGAGTTGGAGATTCTATGTATATATGATTTTGTTTAATACTTCTCCAACATTCAAAGAACCAAGAATGGTGGAGTCCTAAccaaattt----gaaaacaatgaattcTTTTCAAATGACAAAGCTTCTCTAAA----------------------------------GTGCTGGCTTTCTAAGTAGAAATGCCATATGATCTAAG-----------------GAACTGGC-------TTATTTTGTAAACCTTTTATTAAACAGAAGACAACATTTGGATCTGCATTCATCACCCTCTTGCAGGTGATTAACCAAGATAACTCGGAAAGTTGAAAATG---TTCCTTCTTGCCTCTCCAACGATGTATCAGTAGCCAAATGCATGCTGCAATTgtcaaaaatctgaatttttaataaatcttgCTGCAAGTCTTCATTTGCTATAATTCATGTTAACAAGATTCAATGAATATTGCAAATGatcatttttcttgttattctaAAGCGACtccctaatttggcaaaaggTTTGCCCACATCTGATTTACTTAGTACTTGAATAAAATTAGATGAAATGAAGAGAATTATATATTAGCAAAATGTTTCATTTAGGTCCATGAGGCTGCTGATTCGGGCTTCCCAGCAGAGCTGGCTGCCG-GGCTTGGCCTGGA--CAGCCA-----GGCCcattcttcc-ctctctcttttcatCGTGTTCCAGGATAAACTCCCT-GTTTTTCAT-TCAGAGCTTCGACCTCAGcatggttttctacattttttccctcttctggGCCTTTTTGATTGGGGGGGATATTAAAAATGGATTATAAACAGCCTCGAATACCAGTAGATAAAATAGTGGTGGAGCACCTAATATTTTGTCAATAACTGAATTCTATGCATGTTGGGTCAGGGGAA----TAGTAC--CAAATGGGTacttat--------aaaaatgtgaaatttggCAGGAGGTAAAATACATCAAGGGAACAATGAGAGTATAACAAAGGCTGTGTTCAGTTAAATGCTGAAT--TATATCAGGCAGTCTGAAAGCTTTAAACagtctaagaaaaaaaattggcatAGATCTACCACCTAATgtagaaatagatttaaaacatAATAGACTTACGTCAGTATTAATGgatttgaaattttatcttttgaaaat-ctGTGAACATAATGAATTAATTCAAATTACTCTAAAACAACAAGTATAACATGATAAT

a score=56436
s chr3           156303846 2015 + 160039680 TAAAGTTCAGATTTCTTCCTTAAGTTTGGTCTAGAAAATAACACCAATGCCCATCACTG---CAGAAAATTCAAGCTCTTCCTCTTCCTGCTAGAGAAATGCTGAGCAGAGCAAAGCAATTGAATAAAGGCTCAGGGGACTTTACATCTAGGGAGGCTTGTTTATATGTGGGTGTCTGACTCCTTAGA--CCCAGGAGTGCCAAGACAAACTATT-ATAGCACCATGCAGTGGGAAGTACAACTAGAAGATGGCCTCACCTTCCTTTAGAATAAGAACATAGTATCCCTCTGTATCAACTCACATGCTCAAGTTAGTCTTTTCATGGTAGCTGTTTAATAAGGGTTTGG--GGAGGCTTGAAAGGAAATGGCTTGCATTTTCAACAATGCCTCGAGTGGCTTTGCAGCGTGTG--ATAAGGCAATATATAAATCTGAGTTGTTGTTGTTGCTAATGGGATCTATTCTCAACAAAGCTTCATTGTGCTGGCTGCTTTTGTGCTGAGGCTGCCTGGAGGAGGGAGGCAAGTAGAGAGTGCAGTCCTGCTTTAAAAGGAAATAATCAGTCTGCAGGTGGCTGCATGGTGGG-TAAGCAAATGGGACTAAGTGTAG--CATGGCTTTCCTCGCAGAATAACAGCAAACTAGAATGAGCCCGATAAAGATCTTTTGTACTAGCAGCAT--ggaacaaaagctttgggtactgaagtcttcatgtttatgcagcaaaacCATGGTTTGCTTAAAATTGCATTTTTACTCCCCAGGAACTCCCTACTATTGTGTAGAACTGGGGGAGTGTATGA-ACTATCCCTTCAATGCACC-------TTGAACCTATTGGAAGTCACTTTTAGGACACCATGGGTCACAGTACAG----------------TACATCCTGGATCTGAAATACAGTGCTGCAGACTCAGTTCTTTCTTACCAAGTAGTTTGTCCAGAGTTCAAAGTTAATA--TACTTCTATTTATCTCTATATAGGGAAC-ATTTTCTCATGAAGAGAAAGTAGGCTTAAAGCACTATTGAATTAGTCCGA-AAGGGGGTATTATTTCTGGCTTTTCACA-TCTCCTTATTCAACTCAGTCTTACAGGGCAGTTGAAAAACATTTGACACACATCATAGACTTTGGG-----AAATATGCTTCTTTAGATTTGCAGTGCAATGAAATCAGGACATTTTTGAGTCCCTCTGATTTTCAGTGACAAGTACTTTCATG-AAGACACTGCCAGGTGCTCTCCAGCTTGCTGAGAGAAAAGTAGGAGATGCAGAATTTCATTTCAAAACTCTCCTGGC--------AAAAAGAAGGGACAGCTACAATGAATGGGGTTCCC---TTTAAGATGTTCAGCCACTTAGCTCTGGCTGCAG----TCTATTCCCTGTGACAGCCCCCATGCTCTTGAATTGGGAGGCTGCAGAGTGGCCTCCAGGATAGCCATATTGCAGGACAAAGGCAAGGAGCAAGGGATGGAGGGCTTCCAGCTTCAGCCTA--TGAGTCTGTGAGCTGCTGCCAGAGATAACAGGAAGGCTTCAAAGGCTATGAGGACAGCTGCTCCATCAGGGAG----------------------------------GCTgagaaggcaagaaaggaaaggggcaggagagagaga---------------------------------agaggtggaaagcagagagggagagggagagagggccctgaaaaggaagag---------gagtgaaaagaagcaaggatgtgggggagagaaacagga-----------gagaaaagaGC---------------------------------------------------CTCAGTTTGACT--------------AACAAAGAAGTGGTCCCCTGGAACCGGTTACTAATTTACAGGACAAGAATCAGTGTT---CATTGTTGT----------------TTTGTCAGAATTCCCTTCTTCTTCTGAGTAGTCTTGTTAAACACATCCACTCCCAGGACAACAATTACAAACCTAAATGAGTG-CCCCTGATGAAAATGAATTGCTTCAAACCTCATTAGGGAGTTTAAAGATGTGTGGGAAATTCAGGAAGTAGAGTGAAAGCATGTGACACACACACACACACAgtgagtgtgtatacgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
s HiC_scaffold_1 143452980 2148 + 233722169 TAATCTTCAGCATCCTACCTTAAATGTGACCTAGAGAAAAGTGTCATCACACATCATTAGACTAATAAATCGAAGCCCT--------------GTAAAATTCCAA------CAAAGCACTTGAAATGAG--------------ACAACAGTTGTGAATTGTTTAGAAA-AGGTATCTTCCTCATTAGGACTCTCCAAATATCATTGTTACCTATTTATAAAACAAGGCAATGGGCGATTCCATTTGAGGTCTGCCTCACCTTCATTTTAAATGAGAACATATTTTTATACCTTACTGCTTCCCACGTTCAAGTTAATCTTT--------AATGTTTAATAAGAATTTTCTCGAATGCTTAAAAGGAAACACTTTCCATTTTAGCAAAGATCTGGAGTTGCTTCGCTGTATGTGTTATAAGGCACTATATAAATCTAAGTTGTTGTTG----------GATCTGTTCTCA-CAAAACATCATTGTATGAGTGGCTTTTATGCTGAGGCAGCCGAGAGGCGG-AGGGAAGTGGAGATTTTACTCCTGctttaaaaggaaataatcagTCTGCAGGTGGCTGCATCGTGGGATAAGCAAATGGGACTGAGTGTAGAACATGGTTTTCTGCACAGCATTACGCCAAACAAGAATGAAGCGGATAAAGATCTTTTGTGCAAGCTGTGTTCTAAAGAAAAGCTTTGGGTTCCTAACTCGTCATGTTTATGCAGGAAAATCGTGGTAtgcttaaaattacattttt-ctctgCAGGAACTTTTTACTCTAATGTCACACAGGATCAGCGTATGCTGTTAACATTTCCATTCCCCACAGCATTTAAACCAGATTGGAGTCTGTGTTAGGTTGGAGTAGGCCAAGATAAATCTGCGATCTTTGATGCCACATTCTGGACCC----TATGAT----CACAATCAGTTATTTCTTGCCAAATGGTCTCTCTGTGATCTATAGTTAATATctattttcatttaactttaagtagaaaatgaattttttgaaAAGAGGAAGGA-ATTTAAAGCAGTGTTGAATTACCCTGAGAACGGATTATTCTTTCAGGGTTTTCCCATTCTTTTCACTCACCTCAGCTTTGCTGGACAGTTGAAAAAT-TTGGGCAAACCCCGTGgaatttagggggaaaaaagtgtTGCTTC--CTCTGTGGGACAATGAAATCAGGA---TTTCACCTCAGTCTGATTTTCAAAGATAAGAACTTTCTTGAAAAATACTACCAGGTA--CCACAGCTTGctgaagggaaagaaggagacgGTGAAATCCATTTCAAAGTCCCCCCTGCGTATGTTTGGAAAAAAGTATTAGCTATAACAAA-GGTGCTCACTGTTGTAAGATGCTCAGCTGCTTAGCTC-AGCTTCAGAGCATCTCTTTCCTGTCCTTGTTGCC-TGCTCTAATGTGAGGAGGTAGCTGAGTGGCCTCCAGGATAACCATATTGcaggacaaaagaaagaag-atgggATGGAAGAGCTCCAGGGGCAGCCCAGTGGAGGCCGCGTGCTGCTGCCAAAGATAACAGGA--GCATCAAAGGCTGTGTGGGCAGCTGCACTGGCAGGGAGCTGCAAAGGGAAGAgatgtggggagggagggagtggagagagagagagaaagagagagagagagagagagagagacagagacagagagagacagagagagagacagagagagagagaggagagagagagagagagagagagagagagagagagagagagagagagagagagagaataatgcaggaag-ggggaagagaaataaaaaagtttgGAAGAAGGAAAGGGCGCGGACATTGTGAGAGAGCAGGAAAGGTGCTCACTGTTTCCATTGTGTTAGCCCAAACTAATTTGAAAGgttctgaaaacaaacaaatgatccCAAGGAGTTGGTTGTGA----ACAGAGGGAGGGTCCTTCTTAAGCATTTGTGTGGGCAGCCATCTGCTGTTTGTCTCAATTTC------CTTCTGGGCTTTCTTGTTGAATGCATCAACTCCCACCAcaacaatcacaaaagtaaatgAGAATTCCCTGTAGAAAACAAATCAATTCTGACTCCATTAGCGAGTGTGTAGGAATGTGGAGGGATGCAGAGGTGGTGGTGAtgtgtctg----------------tgtgcgtgtgtgtgcatgtgcgtgtgtgtgtgtgtgtgtgtgtctgtgtgcatgtgtgtgcatgtgtgtgagtgtctGTG

a score=12494
s chr3           156315023  860 + 160039680 GTGAAGGCTGGTTCAGTCCTGTGTCTT-----GTCTTACATGGTAGTTCTTCCTGTACTTTAGAGCCTGTGACCTTTTAATTGTTCTGTCTGAATTGATAGCTCTGCTTCAATCGAGAACTAGAGTGCTCTCCAGGCAACTTCAATGTCTGGAGGAGAACGTGGCCCTCAGCAATCTTCTCCTGATCCTTGTTTACACTTGCCCAGCCACAGTGACAAA-AAAGTGACAGAGAATAGATAG--GTAGGTAACAGATAC----CCTGGGAATTCTATTTCCAGA--GTCACTCCCCCTGGCAACTCAGACCAAAGAATTTGCTGATGGTGCCCTCTCTATATAGACAGAAGCCCAACCTAA--ACACTTTGTGAAAATCGTAAGGACTTACATGCCTTAGTAAT-------------CTGAACA--------------------------CAAACTTAA-----------------------AACTGCAGAA--------TAGTGGAAATTAAA---------------------------------------------------------------------------------GTCTATTGCT----------CCCAAAACCCAGATTGCAGTATGTCACTGTGACT--------------------------GGGAAAAATAAAATAA--------------------------------------------TTCCTATACTAGCGGTTG-GTAC---CACCCGTGGATTACAAGA---------ATACTAAGACAGAAAATGCAATTCAATAAAATTCAAACAGG-------AGTTAATCTGTTAGAATCAAGTGGGGCTGTACTGTAAGGTACATGCTACTG---CTTATAAAGAGGTGACAACAGAGTCCAGTGATGTTAATCAACCAATGTACATA---CAATTGCTACACAATAATTTGTTTAGTAGTATCACA-GACTTTCTGAATTAAAAAAAA-GACAAAGTATCTTCATAGTCCTATTAACTCAAAATTTACATTATCGGAACAATCTAGTCCTCTTGTCTTTTTGATA----------------------ACATGGCCAAAAACACATTTAGGAGAGGTAGCTCTTCTTTTATATCAAAGGCTTT
s HiC_scaffold_1 143461453 1141 + 233722169 GTCAAGTCTGCAGTATTGCTGTGTCTTCGTCTGCCCTTCACATT--TCTTCCCTATGCCTAAGATCCTATG-CCTTTTGTTTGCTATGTGTATATTAGTAG-TCTGTTCCAATGACAAACTGAGACACTCTCCAGGCAACTGCAGTATCTAAAGAA-AAGATGGTCC-AAGCCATCCATTTTTGGTACTTGTTTACCTTTCCCTATCCACAGTGATGAAGAAAGTAACATAGAATAGAGATCTGTAAGTGACAGTTCCAGAGCCtgg----tctgcttcccagccaccacacCACTCAGCAATGCGGAACAAAGAATTTACTCACAGTGTTCTCTACAAATAGACGTAGGCCCAACCTAAATACATTTGGTGAAAATCAAATTGAC--ACAGCTCTTAAGAATCCATAGAAAGCCACTGCACAATagcaagaaatgaaaagtaactctCCAAAATTAAACTCTGAAATGCCAGCTGGTCTCAGCTGAAGAaggccatttttttttaaattaaaatttgaaaaattttatcttaaagataacAATGAAACCTTTTTCAAAGCAGGTAGTTGGACCCTTAcagtagttgatacattgtgtattgtcttcatagttgttcagagtacaagatacagcaTGGTATCTTGCCTAAATATtatcacaaaattttcttttcaagaaaaCTAGGACAAGCTAGCTgtacaactatcttaactaccttatgtatacatatattttttcttactactTGTTGTGTATGAGCACCCATGTACTAGAAGACATCCTCAgaatccaaaagagaaaaagacatcaAAGGAAATTCAAAAAGAGATAATCAGTCAATTGATAAGAATCAAGT-TGACAATTTGGTAACATGTGTATGACAGAATCTTATAAAGCAGTGATAATAGAGTCAGAAGACAATAACTGATTAAAGGAAGCAacttaatatttttagaataatttgTTTAGCAGTGTTACGCAAATCCCTGAACTAGAAAACATGACA---CATCTTTATAATTTAATTAGTTCAAAAGCTCTATTAACATAACAATCCAATTCTATTCTTTTCATGGTATTGTTATTGAGAGCTACCATTGTTATGACACCAAACTCATTTAGAGAAAGTAGCTGTTCACTTTTATTAAAGGATTT

a score=33555
s chr3           156323132 860 + 160039680 ACCAAGGCATAAGACCATGATTTTGGTTGAAATAATT----ATTCATAATTTTCCCCAGTTTTCCATTGGGGAAAAACTGTAAGGACCGGCTTCAC--AAAGTAGTTTGTGGACAGCATCTCTGTACTCCAATACAGCTATGATGTGTGATATGAGGCATTTGCAAAACCATGATTAAGATGTATCATTGTAAGTCAGCCTGAAGCATAGTGATAGATTTTATAGATTCTCTGAGACACATCATATGCTCATTAAAAAGGAAATAGCCTGATATCAGTAATTTTAGGCAGAATGGTAGAAATTAA-----TTGAACA-AAGCCCCATAATATAGATGGTCCCAACTGCAT--CCAGTTCACACTGAGGTAGTCATTTGCCTTCTAAGTAAATCTGAGTATTTTTTTCAGAAGGTTTAAAAGCTCCAACTCTGCAGAAGCTACACCATCCAGAGGCCTGGAGAAGTAATCTGATATAGTCCAAATAAACACTCCTGTCTGTCACATAACCTTTAATTATAATATG-CAACTGTAATTTCACCTAATTAGAAAAGGTGAACTCAATTTTGAATTGCAAATTATTCATTTTATGGAAGCTTTTATGAAATTAAATCCTTGTCAGACTGACAGACTCAGTCAGTGTGGAATGAGATGCCCTATGATGTGAGAGTTTTGATTAATCAGAGATCCGTTCCAAAGGCTGCTGGCTGGAACCATTCACTGATTTTAATGCCAGTAAA-GACAACTTTTCAATTAAAACTTCCATCATTGTTTTGGAGACCAGAACTCTAACCCTTTCTTGAACT--------TACCCATTG-TTCCTCAAGTGTAAGTGTGGATCAGAGAACTCAC-TTCCTGTGAAATAAGGACTTCAAGAGA
s HiC_scaffold_1 143463677 865 + 233722169 ACTCAGGAATAA--CCATATTTTTGGCACACATTATTTCATATAcagcatttttc---attttccagtgGG-CAAAACTATAAGTTACTTCTTTTTGGAATGCAATTCCTATATATTATCTCTGTATTTCAATATCCCTATGATGTATAATTTgaggtattttaaaaagcattattaaATGGTATTACTATAATTCAGTTTGAGGCACAGTGATATTTTTGATACCATCTCTGGGAGACATTGTGTGCTCATTAGAAAGGAAATATTCTGACAGCAATACCTTTAGGCAGTTTGGTAGAAAGAAACGCATTTGAATATGAGCCCTATAATAGACA----ATCATCTGCATTTCAAGTTCAGAAAGAGGTAACAGCT---CTACTAAATAAAAGTGGGTATTTGT--CAGAAGGCTTAAAAATCTACACTCTTCAAAAGTTACAGCATACTGAAGCCTAGAAAAATAATCTGATATAATCCAAATAAACATTCCTGCGTGTCACATAACCTTTAATTATAATATGGCAACTGTAATTTCACCTAATTAGAAAAGGTGAACCCAATTTTGCATTGCAAATTATTCATTTTACGAAAGCATTTATGAAATTAAGCTACCCTCAGACTGACAGACTCAGTCAGTACACTTTGAGGTACTCTGTGATGTGACA--TTTGATTAATCAGGAGTCACTGCCAAAGTCTCCGACATGGAGTCATTCACTGATTTAGATGTTAGTAGATAATGGCTTTCCAAGGAcggctt---gcattttcctgtgaaTTACTAGTCTAACGCTTGTCTAATCTGcctaaaatatcatttattttctcacatgtAA-TGGGGATCAGAATACCCACATTTCTACGAAATAAGAAGTAAATGAGA

a score=38766
s chr3           156347921 3257 + 160039680 CCATTCCTGTTGCTTTTACACCTCTGTCTCCTGACATTTCCTGTCACAGACCCAGAAAACCATGAGC---------------AGAACCCACACAACTATAGAACAACCAAAGCAAAAAGCTGTATTCTTTTAAGCTTTTGTC-TCTCAGATACTTTATCTTTTTCACCATAGTGGAAATCT-GACTGTCACATGAG---------------TGAACTGGTCTGCTAATGACACTTAAGACTGAAAAATTCCCCACAGA----AACAAGGATCACAGACACAATCACGAATGCTTTCTTT-TCATGGCCTCAGCACCTCAGAGAC----------------TTACAGCACAGAAGAAAGTTCCCAAAGACA--CTTTTCTGACTCATTTCAACTCCTTCTAGCTCATAAAAACATCCATCTGCCCATGACACTTAT-AAGACAGT-GACAGTCTTTCAATTCACTGAAATCTTACATTCAAATAATTTCTCTTTCATTCCTTTTCTATTGCCCTGTCACAAGCAGAGATGTGAGGTGCCTTTCAGAAAACAATCTTGCACACAAGTGAAGAAACT------GTGGTTATTTGTAAGAAATATCACCTTGTGAAAGGAACACCCGAAGTAAGCaaaaaaaaaaaaaaaaaaaaaaaaaaGTATGGGAAACTGAAAATGCTTCATTTTGTAACACACAGCTGCTTTTTTGGGTTCTGTTCTA------TTTGTTTCCTTTCTTTTCAATAGCTTTATGTTGTAATTGTGCAGACTAAGACAGATGCATATTA----CTGAAATTGCCAGGTAGATAAATATCTCAATATCTGTCTATTAGGAGCCACAGAATCATAAAAAGAAAATGGCTTTTTAATGGCAAAATGCAGCAGAAACCCAACACAGTGGAAGCTAAAACTGACGGCCACACACCTCTTTGGATAAAATAATTGTTGGGGAATTTCTCCTTTAAAATGCTCAAGCTGCCACTGCATAAAATGGTTTTAATGCAATCACATAAGCCATATAAATACATCTTAATCAGCCGTAAGATTGAAAGCGGACCAATATTACATAAGATGATAGGATGGT---------------------ACCTCAGTAAAAGACTCTTG--TATGCAGTGGAAGTATGGTTTCT---------------------------------TTGGGCAGTTAAA-------TATTAATGACTAAGTA----------------------------------TGTTTCAG-------------------------------------------------------------CAGTGATGTGACCACAGCAAGAACATGTCACCT-TACTTTG-GTTTTACCTCTGTATCTGAGTTC--CTCAGATGTTTATGTTTCTCTGAAATTTTTGCAAAATCCTTTAATACTGACTAAGCCAGGTTTGTTAAATGTCAAC--ACTCCAACTAGTCATCTCAGGAGATGGC--ATGGACTTGATTTCATTAAACCTAGATAACAAATTGCATTTTGAATGTGTTAAAAAATATCAACCATTGCAAAAAGTCCAACTTGttattaatttttaaatttattGCAATAGCAATGCTTCCAGCTTCGAAACAGGACTTAATAAAGGCAGGTTATTCCCttaaattatataaatttaaaaGACAAGAAATATATGATTAATTGATATTCTGTCTTCTACTCCTTTAAATTCAC-------------AAATTTCTCTATATTATTTTAAAACTATTATAATTGTGTCATTGAAATCTACTAtgtatgcatatgtacatgtatatacatatatgtgaatattgtgtgtatacacacATGCTTTAACAAGTGATtgccacaatgaacatgtgaaagcccaaggactggtggatgctgtttcttctctttcatcatgtctgtcccagagatcaaattctagttattagggttgatggcaagcactgttatatactgagccatcttgccagGCAAGTTGAAATAATTGAACCACCAACAAGAAATAAATGACTTACATTCATTAAAAAAAAAAAAAAGAATGGTAAGTCACAATCCCAATTTGACCTAATCAACTCTTTTTTAGGACCATAACTACATCATGTAGGAAGTTAAATTGTAAGAGAAACTAAGTCTATGCAATTAATGCTTTGAATGTGTGTGGGAGATCTAGAAAGGGAGGAAGGAAGCATGTTGTGAAACGCTTGGAAAGATGAAAAACGTAAGCAGGTTGA--ATAGCAAAGGAACATTTGTAATTAAAAGAGCTAACACACATGCCCTTCCCCCTGCTCCTGGTGGTTAGGTGGTTACTACATTACTTTGCCATTCTCTGTTTTCCTACACTGGCACCTGGGGCAGTC----AGGTCTACACCTGACAGTCTAACTAATGTGATTTAACAGAAA------TATCTTATGATTGTCATCATCCCAGGCAACAAAGGATGATAACCTTTCTTCCATGTAGCATTCTGCCA--CATAATGGGGCAATTTAATTAAACTTTCTGTCCAATG--------GTTTATTAATTCTGCaaaaaaaaaaaatcaatacaaaacaaaacaaaacCCACAATTAAATAAATAACTCTAGCTATAAAATTAACTGTTTTATAATTCA---TAATGCATATGTTCAAAACTAGGTTT-TTAAGTGAAGACACTATATTGGAAGAAAAACTTCAATTCCATGTTGCTAATTTCTTCAGTTTCTTTCTTATAAGATAGCTAAAACTCA-------AGTCATGAGTTCACTTG--CAAAGTGATATAAGAAAGGGAATATATTTCTAAACCCTTTCAAATTTGAAA---------TCGAAGATCCTGT---AATGTTACCGGCATCTTTTCCTATATTCTACTCGAAATCAGTAATGAAGATATTTTTTGTAGTGACCTTCCAATGCACTGCTTATTTTAATAACACAAAAAACAATTTTTTCACAGAATTAATAAACCATTGGACAGAAAGTTTAATTAAACTGCCCCATTATATGGCAGGATGCTACAT-GAAAAAGAGATTATTTCTATACAGCTG-ACTCAAGGCAGGCAATGATTGTTTC--------TCTGATACTATAGAATATTTATGAGCAAAAGATACCAGTATGTAGGGAAAGA--ACAAATTTG-GTTATGGGTTTTTTTATATTGTAATAATAGTAGCTATTCATTATCTTCATAATGATTGTTAATTCCTTAATGCATTGTTAGGTGGAAAATTCTTAAGAAAAC---AATTTAGTAGAGTTCATTTGAGTAATGGTGCACATAA-AAGTTAAAACAGAACAAATCAA-----ATTTAAGTATCAGACAGC-CACAGAACCAAAACGGGTGCCGGGTTCTCCCTTCTGTGA--------CACAGACAGAAAGT-----GGGACTAAGAGATAGCGGTGGTTGCCCGGACACAGCCTAATTACT-----------CAGCTTTTACAGAGCCTTGTGTAATTAAGCTTTGCCACTGTTGTAAGACAATATAGAATTTTGTTCTGTTGGGTCCAGTGTGGGAGATTAATTCAGTTTAA
s HiC_scaffold_1 143490888 3141 + 233722169 CTGTCCCTATGCACTCTACACCATGATCGGCTG-----CCTTAACCCAGGTTCAAAAAAACAGGACCCACTGCCAATGGATGGGAATCTCCAAAGCCACGAACCAATAAAAg-----agctctatt--tttaa--tttgatcaTCTCAAGTAGCTTGTT-------ACATAACAGAAATTTTGACTACCAATGGAAGAAAATCAGTTCCTTTCAATTGTCTCTCCAATGACATTCATGAATGAAAGATTTCCTTTGGTTAATAACATGGATCTTGATTCTAGTCATGAATATTTCCTTTATCAAAGCTTCTGAATCTGAGAGATCAGCAACTTAAAATTGTAAAAGTACAGGAGAAAGTTCTGAAAGATATACCCATATGGTTTGGTTTCTTTCCCCTTTGctcatgtatacatttttatgttAAGAAAGCTTTTCAAGACAGAAgataattttcaaatgaa--aaaatactacatgtttgtgatttctctttcagttttattcCATTTCCTTGTCATAAACAGAGATGTAAGATGCCTTTCATAAAACAGTCCTGCTTGtagggaaaaaaattatttatgtggctactgttaaaaaatattatcattgGAAGGAAATACCTGAAGTGAACAAAAAAGTAAAGTGAAAACA-----------------------TTCACCCATCTGGAGCATACA--TATTTACTTTTGTAATGGTCTACCCTGGtttattctcttcctttccaatatttttcttttgcaattgtgcaGAGTAAGACTGACAAATATTGGCTGCGAGTATTGCCAGGTAGATAAATATCCTAATATCTCCCTATTAGGAGTCACAGAATCACAAGGAGAAAATGGCTTTTTAATGGCACAGTGCAATATAAACCCAACATATTGGCAGTTAAAACTGATGGCCCTTCAGTTCTTGGGATAATACTATTGTTCAGGAATTTCTCCTCAAAAGAACTAAAGTCATTAGC-CAATAAATGGGTTTAATGCAATCCAGTGAGCCAGACATATACATTTTAATCATTCGCCAAACTCATAgtgtaattttatttcataagatATTAACATATTTAGTATAATGAAATTTAACAAATTCCATCAACAGCCTTTTGCTTGTGCActagaaatatgatttttaactttttaaaaattttttgtgacagggtctcactatgcagtttaggttggcttTGGAataactgtgtagcccaggctggcctcaaactcatagaggtcctcctgcctcagcctcctcaccagaaatatatttcttgatGATATTTAAAGCCTCTTTTGGTCAAATAAATTTCACTTATATGACTGTGGAACAAATATACTAACTGTATTTTGTATTTGATGCTTATATTCAGATTCTTTTTAGATGCTTCAGTTTtaacaaaaatttgg-aaaatgctTTAATACTGATTAAGCT-GAATTGCTAAAGGTCAGCTTCCCCCACCCACTTATGAAAGAAGAATACTAATAGACCTGATTTT-TAAAACCTAGATAATGAATTGCAGTATGAATGTGCT-TCAAATGTTGATTTTTGC-GTAAGTTTGActtgttattaattttaaataatattccaAAAGATGTGCTTTAGATTACAAAATAGGGTTT-TTAAATGTAGAGTAAtcttaaaaattatgtaattttgaagaaataaaggaataaaatctgTTAGTATTCTATATTCT-CTTCCCTGAATCCatcaaggaacagaaaaaaattccctCAATTATGTTGAAATTATT---------------GAATCTCCCTAggaaatatatg----tgtatacacttttatgta---------------------------------------------------------------------------------tttttttatttcaatat----------gagATAAGAT----------------------------------------------------------------------------------------------------------------------------------------TTCTGATTTAACCCAATCAGTACTTCCTTTGGCTTCCAACCAT-TCTGATAAGAAactaaattagaagaaaaaataaatgtttg-----actacttcatgtataaataaaaatattggaaagaaagaaagga--------gtaa-----ttggataaaaagaaaacataggagaaatGACCCCAAAAAGggaaatttaagaattaagaggG-------AAATACCA--------------------AAGGGAGACCCTAGGTTACTGTGCTTTGCTCTG----CCCAGAAT----------GCAGTCCTCAATGGCTTCACATGAGAA---ACCTCAGCTAATCTTAGGGCAACCCCTGCAGCTTTCAGGTGGCATCAATCCTG-------------------TTCTCTACAGGAGTCCTCCCGCAAGGTGTAACGGAGTAA-------AATCTTCTTATACAGTGAAACTATAAGCTGTTGATGTTGGACGTCAGATAGGT------AGAGTATCGCAGG------AAATAAGTAATATATGTGGGcattaaaatt----------tgattaaaactaaaatatatacttaaa--tacgtttattacttttaaaaaatgctttagaaCATAGGCTGC------------CTGATGGCTTCAAGTATTGTCTTTCAAGGAACGTGAAACATACTTTCATGATTCTTAGTTTCTTTGGTTAATGCGAAGTGAAAAGTTAAAGATATTTCTTAAGCACTACAAATTCAGAAGGCTAGGTTTTCAAgttgttttcaaaatgtttcatCCTTCTTTTTC-ACACTATCTTCAAAATCAGGCCTGAGAGACCTCGTTAC----ACTTTCTAAAGTACTACTTATGGT--------------CTATTTTGTCACAGTATTAATAAACCAGTTTATACAAATTTTAGTTAAGTTATCCAATTGCATGACACACTAACACATAGAAAAGAAGATTGTTTTCATGCAGCCACACTAGATGGACCCAGCCGGTGTTTTCCAAGAAGTCTAATACTTGCTACTATTCA--GCCAAGAAGCAATAGTAAAC-GGGAAAGATGACAAAATTGTGTTATGAGCATTTC--TATTATAAT-ATTGTAGctatttattatttgattaatGAATGTTAAATCTGTACCATACTATGAAGTGGAAAATTTATTAGATCAATTGGATTTATTACAGTTTATTAAAGCAGTTATATACAAAGCAGGATAAAGCAGAACCAAACAAAAATGACTTGAGAAGTGGCTAGCTCACAGAACCCGAACACACTCTAGGGAC-CATTGCTGTGATGTGACTTCATTTATAGCAAGTAGAAGGGGATGGAAAGACAGCG-----TAATTAAATATAGCCTAATTGATAAATTGGCTACCAACTTTCATGAAATTTAGTG----AAAGTTCAGCCTCTGTGATGAAGCTGTCTCTTGGTTTGATCTGTTGGGTCCAGTGCCAGGATATAGTCCAAATTAA

a score=30534
s chr3           156353386 1854 + 160039680 ATAAAAGAACAACTGAGG---------ACCTATGTGTCTCTCTCATACTCGGCAAATGT---ACAGTGAGCTTATAGCTCACCTCTGACCAACACCACAGACAAACCTATTCGAGACATTTATCCTAAAATTGCGGTC--------TGCATGTGGCCTGCTAACCCTGAGCAACTGCTTCCATCAGACAA---CCATGACCCATGGCAGTTTCCAGC-TGTTCCTCTAACAGAAGCATACCCTAAC------------------CTAGCACAGACTCT---------CTTTATGGCTGTAGAATGGGGCCT--GCCTGTGGCGTGCTGTCCTGCCTGCAGAGCTCTGCC-TTTGATTTACAAGCT---------AGA--------------GATGCTTGCTGAGTGACACCC--TGTTTCACAGGACCTCCATGCTTTCTC----CTACATATATGTCTCACAGAGCAATCAGAACTTTTGG--------CTCCTTTTACA--AAGCAAATAAATAATTTTTAAAAACA---------CAGAGTATTAGAGTGACTGATGTCCT--------------------GGAGTTCTCATATTTACCTTCAGAGTCTTAATGGCACTCGATTTCAAAACTCATTCCAACAAAGCGGAAAATTAATATTTTAATATG---TCTCCCACTTTAGCAAGTGGAAATAAGAAAAGTGGGGTTCGTGGCAAAGAAGAAATGTTTTAGTGCTAACTATGCTCATGAATATTTATTGCCTTTACAC-----ATCTTTCTTCCAGTGTGCCCACTCACTTAGATATACCATAAATCACTGCAGAACTCGAG--AGCAATTGTTTCACATTTTATAGAAAAGAGGGCGACAATTTCCCTTTAATACTCTTTTGATTAGA-TTTTGTCATAGTTTTTTACAGAGTGAGTACGAAGGAGTGAAGCACAGCTAATAAAAGCACA---GACATTAGCTTTCTACTCAGGA-------------------CTTCTCTTCAGCCAAGGGA---------AGAGCAACAACAGAGAATTTAAAGAGACAGGGGCGGGGTAGGGGTGGGGTGTGGGAGCTTCGCTGCC--TGAAACCATCTGGACACTAGTTTCCCTCTTGGACCAGCAG-----------TGACCCATATAACTCCTTTATGGTTTAAGATGTGACCTCATTTGCTTGTTTTGGGGCGAAGaaaaaaacaaaaacaaaaacaaacaaacaaacaaacaaCCCAGGGTGGCCAAAAAGTTCACCAATAAGTACAAATATCATGTAAAATATCATAGTCTCAGGTGATTCTTCACAATA--CAAATGGAATTCAAATTGTGAGTC---GTATGGGCATTTATATC--CTTAGTACTCTTTAATACAGTCTATCACACAGTATTTTACTTTGGTGCCCCGTAACGTCTAGAAATGCATTTAGAACTCACTCTCCTCCCTTCACCTTTCATGGGTCCTCACACAGGACCTACATAACAGTCATATGTATACATATTTACTTTCAGGAGAATGAACT-CTAAAATGTATAT------------TAGAATTTTATTTGTTTA----AAGAAAAATACT---CTTGCCCTACAGGAAAGTAAA--GGCAACTGGACACTATGGATAGGACAAAATAACTCTTTCCACAAGACCAAATATGAGGAAAATTTTTACCAAAATTTTTCTGTGAAGACCCATTACACCTTA--GGTCCTAAAACTCACTCTCCAGAAAGACCTCTCTGCTCCTATCGTCAGAATAGCAATGCTAATT----------GGGAGAATACTCAATAACTCAAAGTAAATCATCTCAATGCTAGCTTGACTTTCATGGAGGTAACAGAA--ATAAAGCAAAATGATTCAAACCAATCTAATAACTATTTACAGAGAAACTAACCCATGCTTGAAATATTGAGCTATC--TCTAAAGAAGTGTTTTAAAAGTTAGTTTAGAAATGTGTAGAAG------------TCAAAAGGAGTCAAAAATCACAAATATGGACACTCAGAACTAAATGGGGGAAAACAGCATTGTC-TGTCAT
s HiC_scaffold_1 143499666 1873 + 233722169 ACAAAGGAGCAACTGGGGGAGATGGTGACATGC-CGTCTCTCTCACAGCAGGTCAAAGCGTCACCCCTGGCTGAT-GATCCCCTTTGACCAGCAAAGATGACAAACTTCCCCTGAACCTTTA-------ACTGCACTCCCATCTGGTGCGCTGAGCAAGCTATCACTGAGCAATGGCCTCACACACACAGTGTCCCTG---CGTGGCATTTCTCAGCCTGTCCCTCTGATAGAAATATGCGTGAACTGAAAAGGGAGAAAGCACCGAGGAAACACTCTTAATGGGCTCCTAATGGCAGTGCAGTGTGGCCTCAGCCTCTG-CACAGTGACCTGCCTCCAGTGAGCTGCCCTTTGTTTCACAAGCTTATAGTAGGGGACGATCTGATGATCTGATGCTTTCTGAGTGACAGACAGTATTTCACAAGAACGTGGCACCTTCTCTGGCCTCTGCATGCATCTCCCAAagcaattaaaatttttgaaatagcttctcttttcacataaagcaaataaatagtttaaaaagaaaaaaccagtgCAGAGCAGTAGAGAGAGCCATatcctctcctcctttttttttttttttttttttcgtatttACATTCGGAATTTTAATGGCACTTGACTCTGAAA-TCATTCCAGTAAAgcggaaaattaatattttaatgtgacTTCTACCACTCCAGCGAGTAGAAATAAGTAAAGTGGAGTAAGTATGGGGGAAGAAATGTTACAGTATTAACTGTGTTTATGAATATTCATTCCCTCCTCACCAGATATCTGCTTTTCAGTGT--CCACTTGCTTATATCTACACTAAATCACTGTGGAACACACACTAGTTATGGCTTTACGTTTTATAGGAACGAGAGTGACAATTTCCCTTTAATATTCTTTTGATTAGATTTTTGTCGTAATTTTTTACCGAGTGAATCCAAAAGAGTGAAGCATAGCTAATAAAA-CACATTGTCCAATAGGTTTTTCTCCTGGAAGGACATtgattttatctctttcttctttgtctaGAAAATGGATAGTAGAGAAacaaagggaaattaaagaagacag----------------------aaCAGTTCAGCTGTCTGTGAAATTGTTAGGAAGGCTGCTTTACTTTAGGGTCAAAAGttataaaaagttaatttttacaaCTCTTAT---GTCCATTATAtggattcatttgtttattt-------atgaaaagaagaaaa---------------------------------tggccaAAAGATT-----GTA---ACAATTttgttaaaaaacagaaaaatattaagtgaatttttacagtatttaaatggaattaaaatgtttAGTCAGTACACAGTTAGCTATATCAGTTTTATGTTCTT--------CTTATC-----------TACTATAGAGTCCTACAGTGCCTAA-----------------ACTCTTCTAATTTTAATT-----------------AAGACA-----AATAATCcattaaatatatcttta-------aaatacaagttaccaaaatttccattttttttaaagctataaacttatttttttgaaacaagagaaAAGCTTCATTTgctataaatataagaaaatgggGAAAAGATTTCTGTAGATagg--aaaataacttttt--------tcaaat-------aattttttaccAAAATT--------AGAAACAGAGATTTTTTAATGTCCCTAAAAC---------------------ATTTtcctattaaaggaaaa--catgataattttttgttttaaggaaaata--CAACAGCCTAAAGTAA---CTTTCATTATTAGTTTGAATTtcatagaaataatagaattaaaaaggaaaaagaacctcACAGATGAAATAG----TTACATAGAAATTAATTTCCAGTTGAAAGTTTGAAGTGTTTGTATAAAGTAGTCTTTTGAAGATCTTTTTAGAATTTAGCAGAAGAGGACAGTGACAATAAAAAGAACCACAATTC----ATATTCACaagctgaaaaaaatgaaagaaaaaaatatcctcaTGTTAT

a score=21457
s chr3           156366269 935 + 160039680 GACCACATTTTAAGAACTACTCCTTATGAATAGTAACTATTAAATAAGGCTAATGTTTTTTTAATTAAAAAAATGGCTTGCTCTGTTTATTGA---AAGAAATCCTCCAATCAACATTTAAAAAGACTGTTTATGGAACTTTAGGTGACAACCTGACATCAACCAAGAGAATAAACACCTTAAATGGAACAAAATGAAGCAGTAGATCACATAGAAATTGTAACATTCTGATGAGTGGTGTGCATCCTTGATTAGAACTAGCTTCCTGGAGCCAGGAGACATGAAAGTAAATC-CAAGTGGCAGAGGCAAGCCCATCTCTTACTGAAGCTGAGAGTAGAAATTACACATCAGCCATTTGTTACTTTAAAATCATTGAGGTGTTAAATTATAAAGTGCATTGTCAAGCACCTGGTGTTATTTCTTCATTCACAGAAGTCAAAATCTTTTGAGTGTTACTTTATTTTTTTAATGATAACTTTCTTTGCCACGTTTTTTATGACCCCCAAACCAATCAATCAATAATC--TTAGGACAGCTGAAAATTCTGTTGAG-------AACATATTCTACCAAAATAAT-TACAAAGAACATAGACTCTGTAAAACAAA-ACAAGAGAATGGTGTAAATGGATGGGTCTCATCTGATGGTACACTCTTTTCTTTTCAAAAAAAAAAAAAACCTCCAGGAGGGGCATAAGTTATAGCTCAAGTTACCAATTCTCATACTGAAAATCTTTCTTAAAATAGTATACACC-CCAGTCTCTCCCTGATGAT---TCATATTTCTGGAAGCTGGCACTGATGGCTGCCTTCTTATTATTGAGTGTGAGAGGACCCCTCTCCAGCATTATATTAGTTTCCACAAGTTTACATGATGAAAAACAATCACCCCACTGTCTTCACATCTCCTAGAGTCATG-CCATTCTT------AGAGAAAAGTTATATGCCCAAGA
s HiC_scaffold_1 143507003 905 + 233722169 gaccacactttgagaactgCTTAT-AGGAATAATGATATTTACACAGGCGTAAgcatt-----------gaaatatttaattttgtacaCTGAGGTAAAACATATCTCAATCAATTTGTAGACAAAATTTCTTTGACAGTATAAATCACAATTTATCtctaactaagaaaataaaaccttcaaatagaa-aatataaaaacata-atcacatacaaatttgaacattttcatagCTTGGCCAACTGGTATATGGAAACTCCCATATACCGGCTAACAGACATGAATCTAAATTACAAGTGGCAGACACAAACCCATCTCTTACTTGAGTTGAAAGTTGAAATTACATatctattattcattttattaaaatcattGAGGTGTAAAATTATAG-GTGCAATGTCAAACACTGTGTATTATTTCTCTATTCAGAAAAGTCAAAATCTTTTCAGTGTAAC--TATATTTTTGATAATgactttctttcatattttagttatgactgaagaatcaatcaatcaataatcaTTTAGGACAGCTGCAAAGTCTGTAGGGGTTATAAGAAATATCCTATTGTAGTGCTGTGGAGAAGATTTGGA---GGCATAGCAAAGACAAAAGAAC-------CTATATGGATCATCTTTGAGAGTCTGTGCTCTTGTTTTTGGAAAA----------TCAAAGCAGGATACAAATTAAAGTTCAAAAAGCAAATTCT-ATTTTCAGAGTTTTACTT-AAACAgcatttgccttttttctctctctaatgGTATATTAAATTGCTCTGAGCTGGTACTGATGACTGCTTTCTCCTTCATACAAAAGATGG---CACTAAATGGGTTTGAATTGGTTTCTAcc--tataaatgaaacaaaactatcACCCCATTTCCT------------GAGTCAGGCCCATTCTTGAACAAAAAGGAAACTTACATAtctagaa

a score=14843
s chr3           156389919 2039 + 160039680 AGCAGGGAAAGGGTCATTGCAGTATGT--ATGAGCTCTTCAGAT---TCTCTCTATACATA---AAGATTCCAGGTGTGTGGATATTCACTGCAGTACTGAATCAAGCTACCGATCCCCTC-AGGGAGTTGCATTGCTCTTCA--------------TTTGGAACCCCAGAGGCTTCCCGGGTTGTGCATTAGG--------------CTGATATCTCCCTAATACC---------CCAGCTGGCTTCCTCATCCTCCTTTTC--TGCTATAATTTGTT-------GCTGTGGCAGACACTGAGGTGTGAGATCTTG---GTGGTGTGATTATTAATTGCTGCACCTGGAGGAGGGAAGCG-----AATACGCTTGACAGGTACGGATGGTCTCACTTTACTTCTACAGATGCTGCTACAATGCTCACCTTATTATGTC---------------ATTATCAGCACTTAGAACAGGGTGCTATCGTGTATGCAGTGTTTACTTCCTGAGGTCTCAAGATGCCAGGATTTGTACATTGTTAGATTCTTGTAGTTTAGGCTGATAATGTTTGCCTGAGTTACAAAATAGATTTGAAGTACTGCAGGTAAAACACCACCGAACCAGTTATCCTCCAATGATTTGGTTCTGTAGGTTTATATCATGTCAGATGGACAGTTTACACTGGGCATTGGTAATAGAACACTCCTGGTGTTTTGGTTCTGTAAATGCACATGTTAGATGGATGGTGCACACTGGACATTGACCCTAAGCTCATTTGACTATCTATAAACGTTCCAATGCTGAGACTGGTAACAGGAAGTTTATGCTTACCAAAGAACAGAGGGGCCTTTACTCTGTTTAACTGAAGCAGAGGGCATGGGGCACAATGAATTGTGAGAGAGAAAATTATTACATTTTGTTTGCAGCTTGTTTATGGTG--------------TATCACCATCCCTACCA----TCCAAGGGCAGA---ATGGCGGTCTTTTTTGTTTTTCAACATGAACACTCTTAATTTTTTATTACCAAATCTTTAAGCCTTCTTATTTATATGTTTTCTTGGGTTTTTACTTATTTATTTTGCCTCTACAGCTAGCCTATAACATCCTCAAATAAAGAAAT----TAATGTTCTATGTTTCTCTCTATTGTGAAGTTAGTCTAGCTACTAATTT--GTCATATACCAAATAAACTTATTAAGGTTATTCCTTAAATAAAACACCAGACAAATACTATATTTTATTTACCGTAAAAAATAAAAAATATATA-GTATATCTGAAAATTCCATTTTCACTGATATTTTCAGCATTCTAAATTGTTTCCTGCCTGAATTTCCGAG---TTCAAA---TTAAGATGATAATACAGCCAAGCAATGTTTACTGTAGTGTGCTGGGTCCTGGTGTAGCTGTTTGCCGATCTG-AGTTGGCATAGCCTACTGTG-----------------------------GGTAGCATGTGACATAGAGGTTT--CCTTGGCACCTGATGAGCTCAGTG-------------TTATAAGCAGGAAAGGTGAGTGGAGGAAGAGCAAGAGGCAAGCACAAAGAGG-AAAAGTTCGAACTTTCTCTGACTATAAAGCAACCAAATC-------TTCAGCGGAGGAAGAGGAAGATCACAGAGGAAACTCAACA----AGAGGCTGGGGATGTGGTACCTGGGAGAGGCAG------AAGCCTG-----------GCCTTCAGAAGACAAGCTCAATTCAAGTT----------AATGCAAGTTCAGAATCACATCAAGATGAGGCTTTCCTGACATGTGCCCCTAAGTGTTGGCTGCATCTCCTCAAATACCATAC----AGGAGTCAGGACCAACATTAACAAGGGACAGAAGTAAGACTAAATGACAGTATGTGCTGATATTTGACTCTGGAGTGGTTGAATCA------GAAAACAT-GAATACATCTAGGGTCCAGGAAAAGGGGAAATTGTCTTCAGTTTCATC-----------ATTCCCCCCAAAGTTTTACAAGCTAAAAGGAAGAAAATTTCAGCATTAGAGAAAAATAAAGTTTAGAAATTTCCAATGATTTTATCTTGGGCATGAAACT--TTGTTTTTGTCTAAATCACAGTTTATGGAATTGTATTTTGCCAGCTGCAGTTTAGGTACCAAATGCCCAAATGCTTGTGT-TAAAAGCTTATACTATAGCCATGAGTAGTGAACACTGAAGAG
s HiC_scaffold_1 143527244 2060 + 233722169 AGCAGTTAAAGATCAATTGTAGCATCTTGATGCTGTCTTTACATAGCTCTCTCCTTACTTACTTGTGGTCTCAATTTGTTTCTTACGCATTTAAGTGCTCAATTATGCTAATTGTCTTCCCTAGGGATTTGCTCTTCCCTTTCCCTGCTATAGCTGCTCTGTGATCCTGGAGGCTTCCCTTGTGCTGAATAGTGTAtgctttttctctctggtgactTTATCATACTAAGCTTCTTCGGGTTGAATTCcttgacattattattattattattatttttttttttttactgtatcagACTC--AGATGTGGGCTCCTTCCTGCAGAATGATTATTAATTGGTGCACCTGGCTGAGAGAGGCATTGCAAGTATTGTTGACATAAACTGATGGTTTCATTTTCCTTCTACAGATGTTGCTATAATACTTACCTAGTTATGTCTTTTGAGCAACATACATCATTGCTATTTAGAAAACTGCATTACCATTTAAGAAGTATTTACTTCCCAAGGTCTCAGAATGAGAAGATTTATGCCTTGTTTGTTTCCTTTAGTTTAGGTTGATAGTATTTGACAGGATTGCAAAGCAGATTTCAAACACTAAAGGGATTACAC-------------------------------GCTGAAGAGCACTGTCAGCTCAGGT-----GTTTGGAGGGTGCTTTGa-------------ctg----tttgcttcttt------ttatatCAG-----------ACATGGGCCATTCACTCAGGGGTAGTACCCCTCTCCCTG-------Cagtgaagaaat-----------attttctgttta------------------------ttgtgCAACTGTAGTGTTAGGCAGAGAGTCCATTAGatagaaacag-taaaataattaCG----------GGCTTGCTAAGGTTAAACAAAGTTTAACCTACCACAACTGCTACCCTATTTCTATTGTCAGATGTATTGGGGTATTTTTT-------AAGCTGGAGCTGATTATATTCTTATTAATAAAACTAT-----------TCTTTGTGCTTTCTTGTATTTCTCCT------CTTTGCTGCCTTAGCTAACATAT---gtgatcaaaaataaaaattacataattctGTATGTCT-TCACAATTTCCAGTTCAGTGTGCTTCCCTATTTCAGTCGTATGGTACACAGAAGTATTAA---TATTCCTTAATGAATATGGTAGGTGCATAATATGTGCT-TCTACAATGAGCAGAGGGTTAGCTTTATGTATGTCTGTGACTTCT-TTTCTTCTATGCCTTCCAgcactttcatttttcatttatccaaATACCAGAGAGTATCAAATACTGCAAGCAGTAACTGCGAAGAGCCATTTATACTGCAGAATGA-GGATC-----ACAACTGCTAAGTGAACCACAGTTATGGTGG-CTACAGGGTGAATGAACAATAGAAATCAGGCCAGTAAAGAAACAGGTCTCATTAAAGTTTTCTCTTAGCAGTTGAATGGCTCTTAGCTCTCATTTCAGATTGTGCATAGTGAATATGAATG-----AAAGTGGGAGACaagcaaagaaagacaaaaatacta--TTTCCATCATTACAAAGTAATAAGAGCAATGCTAACCACTAAAGAAGCAGGTGGATCACA--------CTAACAAGGCAGAGGCAAAGG-TGTCGTAGCTAGAAAAGACTGTAATTAAAACCCGTAAAATAATTCACTGACAGGAAAGAGTCAGAAGTTTGGCTATCTGGGTGGACTGCATTTTGAAAGTCAGTTCACAGTATGGCTTGTCTAATGTTTTTCCCTAAG---TGGCTATGTTTCCTTCAATATCTTCCAAGGAAGAATTGAGACTCACACCAA-AAGGATCAGGGCTCAGCTCCAATAATAAGGCCAAATGAT-TTCAGCTGTGGAAAATTTGGTTCATATCCTGGAAATATAGGATGAACTGAAAGACTGAGAGAAG-------TCTCTTTATTCTTTCCCAGGGCAATTTATTTCctc--aaattatataaattttgggAAGAAAACTCTTAGACTTCAAGAAAAAcgaaatttagaaattttccaTGGATTTAGTTTGCCTTtgagatcaattttttttttctaaattaaaggtTACTCTATCATGACACGTCTGCCATAAGCTGGATTTAAATGTCCCCTAGACTCAGGTATGAAGACTTGTTCTCTAACC-----TGTGGAGCACTTGAGAG

a score=23814
s chr3           156393289 1373 + 160039680 TGTCTGCAGAACTAGGGAAGTTGATAAATTACTTTGATTAATTCATAGCTTTTAATTATATCAATAACTATAAAGCAATGCCTGCTTTCC--TGTTTCTATTG----TGTAATGGTTGCTAACAGTGGAGCAAGTATAATGTTTTGTATTTATATTACAGGTTTAATTAAATGACTGACCTGCTCCTCCCAATTTCACTAAATTAAACAAACAA--GACAGTGACCTTCTGTGGGAGTGTTGCCATTGTGGGTGTTGATGAGCTACACTCTTAAGCTCACTGTCACATTCAATTAATTTCTAAATTGCACCAAATTGTTGAAAAATAATAGAAATGTAACAAATGATTGTATCCTTCTTGATAAGAATATACTATGAAGC-------------------------------------------------------TTATTTGCTGACCA----------------------CCTCCT--GTAGTTG-TCATGAT------GGAGTTA---------------ATTCATCAGCAGACATTTAATCTATGCCACAAATATGAATCTTATCCAACTGTAT---TTTATACATAAATTT-ATGTAAAATTAATACATACTTGTGTTCTAAATCAAGACAGGTACCGCATTTAAATAATTTTTGTGATTTTTGAATAAATATTAAATATGTATCCAACAAGAGCACCTCTTGCTAAA-GAAGTGGGGCAAGTGGAAGTTCTGTCAGATGTC---ATAACCTCTG--TTCTAGTGTTGCTGGATCAGAAAGATGTGTTTGAAGAAACTAGAAGTAAAATTGAAATAGCTATGGTCTGGATACCTAGAGCTAATCAGCTATCAGAAAACAAAATGGGGA--GTCTCTGTGTACTGAAACTGTGCTCAGCATTTCTCCAGCTACAAGGCTCTAA----GATATTTGAGTAAAGCAAGGTGCA-TCTTCTCA----GCCTTCTCTTGC---------------CATCAGTACACCATCTGTGCATATGTAGGTATA------TACCCAATGGAATATATTCATCTTGCTTATTGC-TTCTACTTGCCAAATATGGATGATTCATTTTTGTAGTTAACATAAGTTGTTTATTGAAATCCTCATTGATGTTGAAACCTAGTTTCCTAAACTGGGTTTAGGGATTCCTTCCAGTAATTAGAAATGAATTAAGTCCATCTCTTTTACAATAGCAAACCAA-ATCCTGAAAA---------------------------------TGGT-------TCATTCAAATCAAGG---ACCCCTACAGCAGCTTATG-TGCAACTACCATGCTTTCAAT-ATTATGATGCATCTGATACATATTCAC-TGTACCACAAACATAATATTTTTATTGATACTTAGCAACACATAATGCAAATAAAATGTCTATAGGCCATATAGCTT--CTTTTTC--AGAGGTATAAACTTATACAGTACAATGGGGTTTCAATAAGTCATATCTTTCAGCATGAAGCAAGGAACC---CACTCTGAGAAAT-----AGAGCCACGGTATGTGAATAATATCCCAGTGAGAAA
s HiC_scaffold_1 143529901 1540 + 233722169 TATCTGGAGGCTTTATAAAATtgat----tattttaatacattt-tgatatttaattatATCAATAGGTacaattta-ttcttgttttttattatttctattaactATGTAATAGTGGACAATAATTTAAGAGTTGCAATGTCTCATTTTCATGCTAAAAGTTTAATTAGGTGTCAGATACACACCTCCCaatttcacaaaattaaaaaaaaaaaggaatatagtCTTCTGTAGAAACATCAACATTGTCGGTGCTGATGAGTAACAACATTAAGCTCATTGTCACATTcaattaatttctaaattataacaatttatc-aaaaataatagaaatttagttAAC-ATTATATTCTATTGGGCAAAACTACATTCTGAGGCCAGTGATGCAGCTCAacagcacaagagcctgcctgcaggttcaaggtcctgagtttgattctctgctcaaaaaaaattattcagaagtatgctttctgagtatttattcatgtttttgcCTAAGTCAGCAATTTGCTTTCACATTCATCAGCAGAAAT---ATATTTGCTACAAA-ATGAATCTTacaaaaatttgtaaatttatacaaaaatttaACATCAAATTAATAAATGCTTTAGCTCTAATTTAGGGCATGAATTATATTTAAGTCA-TCTTGtga-ttttaaataagttttaaatgcatttccaccaaaa--attgtttattaaaggaatttaattaattgaaacttctccaaaatattttaataacttgTGAATAAAATCATTACTAGGTCAGAAAGATATTTTTTAGTTAACTAGGAGTAAAGTATAAAAAGTCCAAGTTTGGTTGACTAGTACTGGgtagt--tcaaaaaataaaaatgtacctgCCTTTCTGCAATAAAACC-TCTTCAG-ATAATGCCAGC--AGAGGCACTAACTATAAGACCTAAGACAAGCaagttatatttttcttaaatcacttacttttgcatttgatttgtttcacttaaatgGTTTTGTTATACAGATATGATCATAACTTTTTAACCAGTTG-GTACATT-------GTTATCGCATTTTACTTAGCAAACATAGAAAATTCACTATTGTAATT--TATGAGTCATTTTCTAAGAGCCTTGTTGACTGCTAATTGCAGTTTTCTATGTTAG----------TTGTTATGGCAATTGGGAATAAA--GGACTCATTCCCTTTACTATAGGTAATCAAGACACCGAAAAAGTCTGACTGATTGAATTCACTTTTCATTTGATTGGTCTGAATGTAATTCAAGAAAAGATATACATTTGTGACAGTTTAAATTGCAGTAGCCATAATTCCAATAATAATGGTACAattggtttatatttttatataatgcaaaCAGAGTTTTTGAGTTGCTACTTGTAAACAAGTTTTGCAAGCAAAATGCCCTTAAACAGtgcagttttacttttttaaaaagctacaattTTACATAGTATAATTTGGTTTCTACAAGCCATATTAGTGAGCATGAAGCAAGGGTGTTAGTATTCAGGAAAGCTACTAAAAGTCTCAGTCTGTGAATTACATCACGATCATAAA

a score=49147
s chr3           156401435 2262 + 160039680 cattttatgtt-ctgccattcagatgtagtcagaaaagaaacaagaatCCACACTAAGCAAGACGGAATTCAGATCCTCTTGGCTTTCAGTGATTCATAAATGGGGGATTGGGAAGAAAGAGAACTCAAGTCAAATGCATCAGAAAGGGGTTTGGCCTAG-GATTGCAAGCCAGAGCTTA---GAGTCTGTGCCCCAGTGGAGATGTCAAGACTGTGGTTGACAAGGCTGTGCCACTCCAGGTTAGGTAACTGTATTGGCCAATCCTTTGGTTT---ATCTTCAAA----ATCTTATATAGCAAATTGTAATTGTATTGTATTACATGAATAT--------TATATTCATGCTCTCTTTTAATTCCCCAACAGTCTAAAAC-TAGTAGAAATTAACTTGAGGAACAACCTGAAAAAAATCACAGTATTATTCATATTGTAA--------------TTTCAAACAACTGACC---------AATCAAAAAACTCAGAATAAACTGTTTGCTGTAACAACTGCTTTCCAAGAAACTACTCGGTAG-----------------AATTCTGATATCTATGAGCAAAGCTTGAGAGTGTAAGGCCCCACAAACTTGGACAAATATAACCATCTACATTGGAGCTTATAACTGATTTACCCTACAGCAGTTAAAACAATGAATTGTCATGTAGCTATTTTCTTACATGTTTCCCCTTTCAAAGTTTATTTAAAACTGTATTATCAGGGACAAAATA-----TAAAAAGTTAATGTCAAAAGTTATATATTGTAGGAAAGAAATTAATTCTTATACATTACCAAATGGAAGTCCTGAATGCTTAGGCCCTTTCTGGGAAAGGTTATTTGTAATGACCAAATTCGTCACTGTTTGGAATCTTGGAAAGGTCACAGAGAGAAGGTTTTCACTTGttttaaataaaattctatattttaaaaataaatatGCCTTTCTTCCATTTCATAGAAATATCAACACTGTTTGCCCTATAATTTGCTTTTTGATCCTCTGACATTTACCCAGCTGACTGTCTTTGGAGAACAATCTCTTGATGGAGAAG-GCTTTAGGTAAGAAAACTGTCAATTACAAATTACTACTTGATGCATC-TAAAGTGCAGACGTCTCTAGTTCTAAAGACCAACCTTGTTAAGTATTTCACAG-------CCTCTAACTCTAACTGAAGTCTACATGGTGCATCTATGCTGTTGCAGATCAGCTTAACTAACAAAGATCTGGTCAGGGAAGGAAAAATGTCTTAATT-AAATAATAAGTGTATTATAAAGCTATTACTA-GAGATGTTTCTAAGATTATAG-------------------------------------------------------------------------------------------ACATGTGATTGA-----TCAATTAAGG--TCTTGAC----TTTCTTGATGCACAC--------------AGTTGAAAGCATA-ACTTAAACTGATTAGTTT----TGGACATTACTTTCAACATTTCAGGAAAGAGCTTATCAGGGTTAAAGC--CATCTCTGGCATTTCTTCTGAATATACTTTACCTCATACAATATCATCAGAAGTTGTAGTCTGTAA-----AAGGAAATGTATAT---AAGTGACTTAAAAGTACTATTCTAGAGGAATGAAAGCCAG-------GAACTCATTGTCCAAAAGGAATGGTTTTCTACTTGTAAT-----GTA---TGAAATACATATTTATGGGTGCGGAGT--GGCATGGAAATAATACTTACATACTTAGTATCAACTGCATTCTTAACA---TTAAAAACTG--TAAGCTTGGGCTACCAGGATATACGTTGAAAGTGTTGG-----ATATGTCATGACTGATGCTACAACCTTTGCTACAAAAATAAATTTTACCTTTCAGTAAAATGTCAGTATTAGATTGTAAATTAATGAGATGT-----ATTTACCTTTACATTCCACAGCAAACATCTCCAAAAAAAAAAAAAAAACAATCATAATCTATCCTCCTGGGTATGCATGAAGATGAATTTAAAAAGCTGTTTTGACTTAATTGGATAATGATTTGTGTCTTAAACACACATCCTTTAGAACCTTCATATATCACCTTAGGATGAAATAAAATATAGTTCAATCATTATTTTCTTATGGCTTACAAACATGAACACATTGGTATATGTGCTTGatatatatatatatgtatatatatatatgtatcatatatcaatatattataGACACATTT-AATGCACATATACAAAGCACCAGTGAGTTCTGAAATGACCACTCACTAATGCTTAATTTTCTTCATACAGTAAATATATTATAATTGGTATTTT-------------TAAAAAGTAATGTTTAATTCCAATTGTTTAATCCCACCTTACAAAAC-----TGGAGTCT-------TATTTAAAGCATAA-TATACAAATCAGGGTTGATTTTCTGTT---TTTGCTTATATGT
s HiC_scaffold_1 143540548 2387 + 233722169 CATTTTCCCTTGTTGTCTTTCAGAAGTCCTGTCAAAAAGCACAGGAGACACCAATCAAACAAACAGACCT-GGATCCACCTGGCTCTCAGTGTTTCAGA---GAGGAATTAGGAA-AAAGGGTGTTTTTGGTAGTGATGTCAGGCCAGGATTTGGCCTTGTAATTCCAAATTTTAACTTATTCGAGTCTACAATCCAGCAGATGTGTTATCAT--------GCAAGGCTATATAGGT----GTGCAGTAATATTATTTACCCATCTTTTGTTTTCATGCTTTTATACTTCATCTTATATAGATAGCCAT----gcatacaaatacataaatgtgtacatgttaCCTTTATATGCTCTTTGAATCCcctaaaagttaaaaacatagTA------AATTTAGGAAGTCACCT----AAAACCACAATATTATTTACATGATAAGAAAGATGTCCAGATTCCAAACGAAGGACCCATTCGAACAATCAAACAATCCAG--TCATCTTCCTAAGTTAGAAACTGCTTTACAAGGAGCTCCTGAGTGGTGCAGGATGGACACTGGGAGACAGAGTCCTCCGAATAGATCTCACAAGTGCAG-----CAGCATTCTGCACAGAAGTGATAAAC-------AAGAAAATGACTGATTTTCCctgcaa-aataaaaaagctagaTTACCATATAGTTGTTcccttatat-ttttctctttcaaaatttgtATAAAACTGTAGTATCAGGGATAAAATagcttataaaaatttaatatcatgagttattt--tgtagaaaagaaattaattcacATATATTACCAAGTAGAAGTCCCATATGGCAAAGCTTTTTCTGGAAAAGGTTACTTGTAATGACCAAATTCGTCACTGTTTGGAATCTCATAAAGGTCACA-ATAGAAGGTTTTcacttgttttaaataaaattctatattttaaaaataaatatgccttTCTTCCATTTCATAGAAATATCAATGCTGTTTGCACTATAATTTACTTTCTGAGCCTCTGACATTTACCCAGCTGACTGTCTTTGGAGAACAATCTCTTGACTGAGAAGCACTCTAGGTAAGAAAACTGTCAATTAGAAATTACTATTTGATGCATTGCAAAGTGCAGAAATTTTCAGATTTAAAGAATGACCTTGTTAAATACTTT-TAGTTCTACTCTTTTAAACATATCTAAAAATGGCAT------TtcaggtaaatgcaaagaaatttgaCTCACAAAGTTCTAATCAAGGAA-GAGGAATgtcttaattaaaagaataattctactataaacttaataatatggtgtATTTCTGAGTTCATAAAACGTTAAGTCAGATCTGAAATATTATGAAAACCTCAGCATTATTTAGACTTATCTTGATCTTTTGAGGGAAACGTATTTTTATCCACAACATAAGTAATTAAAACCTTCAATTGGGGCATCATGATGGTGTTTCTGTATATACGCCTATGTGTGTTTTTATATGTATGCAGATATTTAATTTGAATGTTTTGAAATTGACATTAGTTTT-GTGTAATAAGAATTAGTTGATAATTTATTaaactgtatattttatatttattttaaa-atattttaatacttataCTACACGAATAAGATGCAGTCTCTAAATGTGAAACAAATGCTTATCAcgagtaaattaaaa----tattttataaaactgaaaaccaGTGGCCATAAACTGATTA-CTGAAGGTAATCCACTTTT-CTTATAATTGGCAGTactttatattacatatttacaAATGTATGGTTAGATACATAAATCTAATTTATGTA-TTAGTATCATATACATTTGTAATAGTTTTTGACACAGGATAAATTTATACCACcaatgcacat-ttaaaaatattaatatatatatttcctgcCTGAGTTTACAAgttttgcaataaaaat-aatttcagggtCGAGTAAAAT-TCAATGTTACCTCTAAAATGTGTGATATCTAAAACATTTATGTTCACAT---------AACCCctccaaagaaaggaaata---------attcaatcCCTCTAATTGTGGTTAAAATTGAATTGCAAGAGCCACATGGATTTAA----ACAAGAATTTATGCCTTCAATATATA-ACTTGAAGACTCtcatttatc-----------aaataaaatatattttaa-----atctattttcactttataaa----------------------gttaatatatatacttatatacacACAT-----TATCCacaatgaataca-cacacacacccctggaTGTTTCTGTAC----CTATAGTGAGTTTTCAGATGATTATTCCCT----TGTCACTTTTTTAATTCAGTGACTGTATcaggatgacttttttttttttttttttatacaaagaaATCTTCAATCCCAAGGATTTTGTTCCACCTCACAAAACATCAGTGGTATATCTGATTATATTTCAAATGTGATTTTACAAATTAAGGTGGAATTCATATTGAATGTACTTGTTTGT

a score=44702
s chr3           156406883 1861 + 160039680 aacttaggaattatttacttctggaatccatgcagtgttcagactctgatcaactgtgataactgaaacgatacaaaataaagtgtggacaagaggggCCACCGAGG---CTTGTCATGGAAGCCATTAACTTGTGTTTACTTATCTCAGCTTTCTTTGCCAGAACTTGTGAATGTGTGATTTCTATATCATTT------GAATTAG------------CAACTGTTTCCTGTCTCTCATTTCTGTTCATGTCTGACCCAACTTCTTAAATATGGG-CAATGTGTCCA-TAGCTGTCAGAC-ATAGCAATAGTACTAGGCCTGTGACTAGAAAGGTGTTTGAAAAAAAAAATTCCATATAAT------GTGGCTAGTGGGTAGTTACAGAAAATGTAGTTCTCAGAGAATAAAGGGTTTT---CAGATGCAGACA---------GTGCAAGCATT-------GTCTGTGGGT-AGATCTGGCTGCCAGTTACTCTATGTTCTTAAAGAAACTAGGACATCAGAAGTTAGCA-CTGGGTAGAGCTGACATTGAACAGACTGCAACTCTACTCAGATTGGAAACCTTTTGAAAACTAACCAAGAATCTAGTCAATAAA--------TTTGCTCCTAGACTGAAAACATGCGTTTGGCTCACCAGGAAAAGAAA----AACTAAGATGCGTGAA-TGGTATG-------ATATGACTGAAAAAAAGTAG--------CCAGTGTGGGCTGGAAGGCTTGTCGTGGTTTATGACTGAAGATAGCAGTGAGTCTGGATCCAAACTAATTA---------TTTTAATTAAAAGCT---AGAACAACAGGCAGGCCT-ATCAAGA------TCATGACTGGCTGCCACCTTTGATGGAAGAGACTAGATACTGAGTATACAACAGAGATTGAAAGGCTGCAGAACTGAGTTCTGATGGCTACATGGGGTAGGCTAGACAGGTCCAGAGATGGTTGCTCTGCAGCAACAGGAGGAGCAGTGTTTGTGCCTCCCAGTT------TGTCTTTAATTACTTAATATAATTTCATTGATGTTTGTGTTAAAATATTTATTTCAAAATCAATGTGACAATTTTTAAGGG----TTTTCTGTAATCCCATCCTATGATAATGTGTTTTCTTTTAATTAATGGGGATTGGCATTTGCCTTTCTTTAATGAAAAGGCAATGATGTATTTTCAAGTTTGAATCGGAAGTGGTAATTAATACAGAGTGCACAATCTGTGTGTTAGTCATCCTGAACTAGATAAAATGTAGAACCTTAATGAGAGCCTCGACAAACTTTTGAATTTTCTTCCAAAGCAAAAATACACAGTGTTTCTTCCAAATTTCTCCCATCAGTGACTTTAATTAGTGATTAGTTGTTAATGCTTGTGGTTTTCA-ATCTCCTGTAATAATGACAGGTTAC-AACTACTGATAACTTTAAAATGTATTTAAATGAACCATCACTTA--AAACGAC--TTTTTTAGATCATGCATGCCTGCCACCTTCAATAAGGGGTTATGGAGTGCCCTGAGAAAGTGAAA----GTTATATTA---TTTATAACCATTTCTCTTTGTGTGAAACATGAAAAATACATTTATTGGAGCCAGAGTCCCAAAGACAGGATGAGCTTTTCAATTCCAAGAATCCAGAGTTTAATATAGAGCAAAATGTAAATGATTAGTCA-TTTGGGTCAGTCACAAGTATACAACCAAGTGACATTCCAATTTCAACTGAAACTAGAATAGCCTACCTTAATCACAAGCACTAATAAATGAGCTGAAGGACAATGCGCCATATTTCTTAATCTGAAAGAAAATGAATTGCCCTGGCT--TGTTCAAATGCCAGATCAAACACCAGGAAAGGAAGCAAGAACAGAGTAGAATTGAATATAAATATGTTATCCTAAATTGCAGATTTATTCTATTTTTATTTTCTTTCTAATATCATTCAAGCA
s HiC_scaffold_1 143546200 1848 + 233722169 AACATAcagattgtttatttctggattctttcc--tTTACTGTTTTTGGACTGCAGTGTCAACCCAAGCcaca-gaaagaaatcacagacAAAAGGGG--ATTGAGGAAATTTACCATGCTCATCATAATTTTGTAATCATGCTTTTCAGCCTTCTTTCTAGCAAATTTCAAAGTTGAGATTTCTTTGTTATTTCAGTAAGAATTAAGAGTCAAGGATCCATTTGTTTTCTGTCTC--------------------------------AATATAGGTCTGTTTGTCCAGTAGCT-CCAGACTATATAATTGGTGCCTACCCCTACACGGGTAAG-TGTTCTACAGA------TGGGTGCAGTTTGCCAGTGGCTAtcagataaataaagaaaatatagcccTCAAAGTATACACAGCTTTGCCCCAAGGCAGGCACCTGGACAGATGCTTGCATTTAAAAGAGTATGTAAACCACATCTG-CTGTCGAGTGCTCTGAGGT-GAAAAGAAAATGGGGCAACGGAAATCAGTATCTGGAAAAAGGTGATATT-------------------------TGGAAAATGGTTTGAAAGTAATCAGGAATTAggtcaagaaaagaagaaatcccACCCTGGATTGCAAATGGATGTGTAAAAAGCCATAGAAAGAAATCAACATCGAGATTCCCAAAGTGGAATACAGTTATATTTGGCTCTATAGAGATCGTGCATCTTCATGTATGTGATAGCAA-------------TAAAACCAGTGATAGGCG-GAGTCT---CTCTAACTCATGAAAGACATGCTTTTCATTAAGGAGTTAGAGagaaacaaatggacttgagCAAGAAAAATATCCAACCTGATTGGCACTT-----GGACCATACC---TGCTG----------------TAGAAAGTAGTAAAGCTTTGCTAAAGTAAC-ACAGGTGGT-GATAAGACCAGGAAGGAgactattactttaaa--aattatataagtaATAAT-GTGCCTTCTGATTAGgatttatttttacatgtttaaTATACTTTCATTGATgtctgtattaaaatatttattttacaatcaATGTGGCA--TTTTAAGGGCTTTTTTTTTGTAACCCCATCCTGTGATAATAAGTTTCCATTTAATTAATGGGGATCAacactcatttttatttaataaaaaggcaatgttttattttcaaattttaattagaaGTGGTGATTAACATAGAGTGCACAATTTGGCTGTTAGCTGGTTTGCACCAGATAAAATTTGTAACCTTAACCAGAGTCTTGGCATACTTTTGAATTTTCTTCCAAAGCAAAAGTAAATGGTGCTTCTTTCAAATTTCTCCCATCAGTGACTTTAATTAGTGATTAGTGCTTACTGCTTGTGGTTTCTGCATCTTTTCTATTAATGAAAGTTCACAAACTAATGATTACTTTAAAATGTGCTAAGATGAATCATC-CTTAGTAAACAACGGCTTCTTATTGCTGTTATTGCTGCTGCTCTCACAAACAAGATGTGGGGTAGgctgggaaaaataaatgattttaaattgagTTTTAGAGCCGTTTTTCTTT-TGGGGAGTGGGAAAAATATGTTCATCAAAATCATACACCCAA--ACAGCAGTAGCTTTTC-TTCCCAAGAACTCAgagtttaaaat-------aatgtaaatgataAGTCACTTCAGGTCAGTATAAAAGGGACCACAAAGTGACATTTCAATTTAAGCAGAAACTGCTATAGCCAATCTTAATCAGATGTTCTAATAAACGAGTCAAGGGACAGTGCTGCATATTTCTTAatccaaaagaaaatgaattgtcATGATTCGTGTTCAAATGCCAcacaaaacaatgtgaaaataatcGTGAGCACAGTAGAATTGAATGTTAATGTGTTATTCTAAATTGTag----attctatttttg-tttcttgcaaATATAAATCAGCCA

a score=54403
s chr3           156411341 2069 + 160039680 GATTCTAAAAACGGAAAATACTGAGCA---------TTAATTCCAAGGACTTCCAGATTTTGTCCTTAATCTGGATGTGAAGAGAGAATGA--GATTCAAATTGCAAATCCTATCAGGAATCTTTGCTACTTTTGCTTCCA--GGCCAAATGAATCTGAGAAAAGAAATTGAAATCAAGATTAAAATGAGTCCTTGATAATCTTGAGTTGACCACTTCTGACAGGTCACAGAAGATGAATT--GGCAAACATAAGCTGTTCTATTT-TATCTTGCATACTTGAAGAACACCA--TTTTATCTCAGGCAGGTTCCTGAGATCCTTGAAGGTCAAAACTCTGCTCATA--ACGTGATAATGGAAGACAGACCC-TGTATACCCCATTAACTTTCAGCAGAGTTAGATTCCCTTTAAATAGGCATTTAAATT-GACCATAGATTTTTATCTATAAAATGCAATCTATTTCCT-TTTATAATCAATATATTATTAATGAAAATACTGTAATCTACACTAAACTATAGAACATAACTTTCTGTACTATTATTGAACTGTCACATAAATACCCAAATAGGTAAACTTAACTTTTTCTGCTTATTTTGAATCCTTACTCAGATTATAGTTTGTTAATGGGAAAGATGTCTGTTTAGTAATTCAAAATAATGCAGTATTTCCTT----CATCAAACCTATTTAGGGGAAGAAACCCTAGGTTTCCAACTTAGAAACATCCTTTACTTATACACAGAAGAAGCATTTGGGCCCAACAGTACTCAAGGTACAATGAAGCGTGAGTAGATTTCTTAAGACTGGCAATAATACTTTATTAATCACTGGCTTTGTTATAATTGTTGCTTGAAAATATATGAACTCCTTCAACCTATCTTTAAAATTCAACTTAATTCTCTTAAAATATCCAGCAGTTTGCACATTTTATGAGTTTATTTTACTT------TGACTTCATTTA--ATTCTGTTTCACTATTTCCTACAGTAAGAAAAAAAACAACCTTCTATTTAAAAAAGTAGAGTTTAAAACTCCAGTCTTCTGAAATTACTTGTAAAATGCCATCTTTGAAATTATCATTCCAGATGAAGAAACACTCA-TGGCAATCttaatttaataattatataaaCAAAGCCAATTAACAGAATGCTAGAAATCATTTTATTGCTTTGTACAACATACAAATTTGATATATTGGAAATCAGAGTTGGAGCTTAATGAAGG--AGCTGTTTGGATGTAAATGTGGAA-----TCTAAAGCCTCTGGGTCTTAGAAGTATGTCACGAGAAGCC--ATGACTGGAAACTGTACCACTGACAATGGCCTGGAGATACATGATTGACAGCAAAACTT---GACAGAAATGTGTcacacacacacacacacacacacacacacacacacagagaaagagagagagagagagacagagacagacagagacagacagagacagacagagagagagagagacagagatgacttatcctACTGCTGTATCAAGCCCC-----------TGACTAGGTATCTCTGAGAGGCATGAGGAGAAAAAAACTGTACAACCTCATTAACA-TGTCACAAACAAAAAAAAATTCC-AAAATGATTAACAAGCTGAACTCGTTTTCCCGCTGGGCATGTTCACATTTGAGTGGGCCAATCACAGAGGGATATTCACA-TCTTCAGCATATGGAAGTTGCTGTGAGAAGAAAGCAATTACCATACTATACTCTTTCAACG-CTGCTTTGGGCAACAAAAAAAAAAAAAAAAAACAGCATTAGTTGATGGAGAAAGAGGCATTAAAATATAAACATACTGATACTTCTTTGAAAATGTATTTGGTTTAAAACAAAATGTGGAAATGTATTATATACTTTGCATTTTAAATATTCTAAAAGAAAAC-AGTCCTTTCAAATGCCATGAACACAAGTTTCTTCCTTTAAAATGTCTGTCAATTATTTCCCACAGTTTGTT-CTAGCTTGGCTTCTAGACTTGAA-TTTCTTAGTAAAACTCAGAAGTCATTTGAATGACAAACAGATTTTTTTTTCTTCTCAGGGAGAAGAGGAGTTGAAGGAGAGAGATGGCTTGGGACAGCAGATTAGGGAAGGCAGGTTTCT
s HiC_scaffold_1 143550455 1949 + 233722169 GATTTTGGAAATATGAATTGGTGAACAGGCTGGCGCTTAATTCTAAGGTCTTCCAGATTTTGtacttaatctg-atgtaaaaggaaaaaaaatgacttaGGCTGCAAATCGGA-CAGAAAACTTTGCTACTTTTGCTTTCTCTGGCAAAATGCTTCtgggaaaagaaattgaaatcaaGATTAAAATGAGTCCTTGATAATCCTGAATTGACCATTTCTGACAGGTTACAAAAGATGAGGCAGAGTAACTGTAAtccattttttttccctcttacaTATCCAGAGAAAGCCATTTTTTATCTCAGGCAGGATTGGGAAGACATTTAAGGTCGTTCTCCTGCTCATATTATGCGATAATGGAAGATGAATCCATCTCCACACCATGCTCTCTCCTCTGAAATAGTTTCCTTTTAAATGGGCATTTAAATTCGACTGTGTTTTGCTCTCTTTACAATGAAATCCATTTCCTCTTCAGGATCAATATGTATCTTATAGAGATATTCCATTATGCACTGAAATATACAAATTTAgcttttataaaatt------------tgtagaaaCC---ATGactaaattta-------------cttttgaattgttttt----------------------aaaaacattggtctagtaatttaaaatatacaagaaattgTCTGGAATGTCAAATTCGCTTaagagaagaaatttt-ttttgaccactgagaattttaatttacttataaaCA----AATTGTTCAATTTAAATGATCTTTGTGCCACGCTGAAGAA-----AGTTTGTTCCATCTTGATGAGTAGGTTTTATCAgatattggtttt----tattt------------tatat----------aacttaaatttaatatataactG-----TGTTAAAATTTTATAGTCTTTACACATTTTATAAACCCATCTGGCttcatttctaaattaaattatGATTACATTTCACTTTATCTTATATTTTGAAGAAGA-----CTTTTATTTACTAAAATTGATTTaataactttattattttgaaagtacatGTCAAATGACAGCTTTCAAATGATTATTCCAGCAAGGGTAACACTCAGTGACAAGCTTAATT---TAATTATATAAGCAGAGCCAGTTAAAGAAATGCCTGGAATCATTCAATTGCTTTGAAAAGCAG--AAACTTAATATACTGAGCCTCAGAGAAGGAGTGTAATGAAGGAAAGCCACTCAGAAGTGAGTGCAAACTTTGTTCCAGTGCCTCTGAATCCAGGTAGTCCATTTAGCACAGCCCAAGTTCTGAGAACCATAGGGCTGACAGTGGCCC---------TGACTAATAG--AAATTCCAGGACAAAAAGCCGACAAAGA-----ACCCAGTTGCACTCTATTaccaacaggaaa----------acaaaaacaaaaacaaaaagag--------------------------------aaaaatttcctATCATACAGCTTTATCAAACCTCTGGAACCATAGTGACCATTTATCTCTGGCAGgtagga-gaaagaaaaactgtaaaatcTCAGTAAGagttttacaaatatataattattcaGGAAATGATTAACATTCTGCACTAGTTTACCCGCTGGGCGTGTTTACATTTGAGTAGGCCAATCAAAGAATTATGTTCAAATTCTTCAACATATGGAACTTCCTGTAAGAATAAAGCAATTACTACTTTACACTTTTCAAAAACCTGCTTTGGGCTACAAAAATAA-------------CATTAGCTGATAGAAAAAGAggcattaaaa-acaaacatactgagcttttcctgaaaatttatttaatttaaaataaaatgttgaaagaaatgaTCTACTTTGCATTTTAGATATCCTAGAAAAAAATGAGTCATTAAATATATCATg-----gagtttctttctttaaagtatttgtcAATTGTTTTCCACTTCTTATTCCTTTGTTGGCTTCtaaagttgaatttttttggtGAAACCTAGGTCTAATTGGAGTGGCACAGAAACGTTTCT---TTATCAGCAAGA--CAGAGTTGAAGTAGGGGAATGGACTGATTCAGAACTTTAGGCAGGAAATGTGTCT

a score=27327
s chr3           156418565 1162 + 160039680 CATGTTCCAAGTTAAGGTTTATAAAATACTCTAAGTATTTGAATGTTGGCATTTTCACTCAATTGTAAGGCCACAAAATTCAGAGACTGGCTACTTAAC-CAGGAATCTTCAAGCCGTGGCATAGGAAACATATACTAATTGTATGGTTATATT--GACTTTGTATGGTTGTTTAACAAATGAGAGCAAATGTTTAAGT-CTAAGAAATTATAAAATGTGTTATTTATCATAAATGGTAAGGGATCCATTTCAAATGGAGTTCTTCTGGATGAGGATATATGTT--ATAAATAAATGTGTGGTATTTTCTATTAAAGATCTGACATGAATGGCATTTTCTAACTTTAAATTTTGTTCAGGTATATTATCCAAACTGCATGGATTTATATTTATATTTAATTCAACACATGGATATATAATATGAT--AGATTATCATAGCATTTGAACACACTAAAAGTGTTATGTGTTTCTTGTGAGATAGAGCTA--TCATTGGCTAATACTCAATGGAAAAAGA-GTCATCTAGCAGCAGTCT-CTACTACTCTTTAATGGTGATTTATGTCCACTTCT--ATCTGCTTTGTTA--AATACCCTTGCTGAAAGAGATTATAGTAGTTCTATGGATATGTATGACATGAAT----GTGTATAACACAAATCTCTATATTTTAAAGCACTCTTTGTCGGATTCAAGTTTTAAAGGGTAA-AAAAGACAACAGAAAGGAAA-GATATAATATGGCTCTGCATATTTTTTCTGATAATGTATTACCACACC-----------------CCTTTTCAATTTTGATTTGGT--------ACTGTTT----TATCACTTCTAATTTAAGACTCACTCACATCTTTCTGTCACTCAGTGAAAACTTGGTTTTTATTTATCTCCAT--------AAAATTGTAGTGTATAATAATGAAACAAATA-AAAAAAGTTATAAAATTATTGCAAGGAACATCCAAGATAGAATAAGGAAATGCCTTCCT-CATAGGGAAGGAGTATTCATGTAAATGATGCC-CTATGTATCAGTATTTCACTCAAAA--AATAATTCTTTCCCCTTCAGGTGGCAAGTC-ACATCTGCATTTAAATAGAAAAATGAATCCCAATTGAGATTTCAGCTCCTGGAATCAACAAGAAAGCAATCAGGTATTGGCTGGAG------TTTGTGTTGGTATcgtacagctgaacatagctgaagatat
s HiC_scaffold_1 143557989 1148 + 233722169 cacccttcAAGTTAAAGTTAATGAAATA-------TGTCATACTGCTTCCTTCTTCACTTGGTCTCCTGGCCTTGTGGTTCAGAGATTGGTGATTTAACATCTTGATGTTCAGTTCTTCACATGTAACACAT--------------GTCATGTTCAGACTTT------TGGCTTAGTGAATGAATGCAAATGTATAAgttcttaataataataaattttgttatttgtcATAAAT--------ATGC-TTCTGGGTAGAATTGTTTCGAGGGAGAAAACACATTTAgaaaataactttataaaatcTTCTATTGAATAACTGAATTAAACTTTGTTCTctaactttatattttgtttatacatatTACT---ACTGGCAAGAtgtttattt-------------tacat--atacaaaATTGGATTAAAATTCTCAAAGCAGCTGGCC-------------------CATACTGTCACATGGAGCTAGCTCCTTAGCTGTCATTCAATACAATAAGAAGACCTTTAATACGACACTGCTACTACTCTTTTGCAATGATTTATCTCTGCTGCTTGATTTCCTGTGTTATAAATCTCCATGTTGGAGAGAAGTGTAGCAGCTTTTCAG-TACACACTAGATGAGTTAGCATGCATAATCCAAAGctctatattttaaaacactca--GCAGGATTCAATTTTTAAAGGATGATAAAAGGAAGTTGAAAGGAAAAGGCATAAAATA-CTCCATACTATATCTCTGTAAGTATATTAACACACTTAGCTTTTGAGAATTCTCCATTTCAATTTTGAATTGGTCACTCAGTATTATTTAATGTGTCACTTCCAGTTTAAAATTCCCTCATACCTACCCATTGCCCACTGAAagtataatttgtatttatttccatTAGCCCATAAAATTGTAGCAtacaataatgaaataaatgtaagaaGGCTATGAAATTATTGCAATAAATATTCTAGCTATCACAA--AAAAGACTTCCTGTGCTGAGATGGAATATTCATGTAAATGAAACTTCTATATATTAGTATTTCATTCAAAAGAAATGACTCCT-CCCTTTCAGGCTGAAAGTCTGAATCTCCATTTAAATAGAAATGTGAATCCTAATTTAGATTTTATCCAGTGGAGTCAACAAAATGTT--TCGAGTATTGGCAGAAAAttggttttaaatttatattg---aaCCATACATACCTAAAGATGT

a score=29504
s chr3           156422406 1215 + 160039680 GACTGCAGAGAAACACAC-ATCCCATGGGACTTAAGATGTACACTCTTTACAGGAATAAAGACACCTTACTTTGTGCCCTGGCTCCAACTGCTTTTCTATGTGACTCTTGGGAAATGGCAAACATCTTCAGG------------------AAGCATGATGTCACTACCTCAGTGCTTAATGAGATGCAAATGAGACT----CCATGCCTG--ACAAGCTGAAGGCTTCATGAACTGGCAATAAGGGTTAGCTGCAACAAGTCTTCTTCCTAGAACAGAATCTATGAATTCCTCCTACACACAGCTTCCATAAGATTCACATATTTGAA--------ATATGTATTTAAAATACTCAGTTCCCTCATCTATAGGTATTAGATGCTTCTAG-------ACCTGACTTAAACACTAAAATGGTACCAGTTTACAATACCAATTTTTTCTTGGCTTTCATATTATCTAAATTAAAATACA----------TGGTGCCATCAAATGCCTCTGCTATCAAAAATTCAAAATGAAGCTAGTGGATCTCCTATGGTA-------------------------GGTAGCATAGGCTGGAAGGAGTGTGCTA----------------------------------------------GTTTATGA--------------CTCTAAA----------AATGGCAAGCAACAAAATGTATTTTCTCAAGATTTAATGTATAGCAAATGTTAATAAGAACAATATT-ACAGTATTTTCTACATA-AAAATGTTATGTAATGTTCAGATCTAAAAAGAACATACTTCACCTT----------AAGCCTTTTTTCTCTTTAATGCCAATTTCTATCTCTTACGAAGATCATCTCTAAAACA-AGGGATTGATTAATTAGGCAATTGATCACTTTGTTACATTAATATGAGAGAGGGAAGAATATGTTCCTGTACCTTGCCTGAACGACATCTGCATCAAACCCTCCTCCACTTCTCAGTGAGAATGTGAGCTCGTGGTAAAGTGCCTCATTTACAAGGAAAAATAGCTGCCTGCCAAAAAAGAGCAATGCAACATAATTACTCCTAGCTTGGAAGCCTACTATTATTTTATTCAATGACATTCCCAAATGGGGCTGGAAGAATTTGACATGAAACATTTTTTTTTGTTAGAAAAAACATCTTTCTGCTTATTTATAATATAGACATGGAGCAAAAATATGACTGGTAGAAAT--GAGCTCCCATTTAACAGTGACAAACTGCTTTCCACACAAA--CCCGAGATTTCATCCCGTTGGTTCTATTTT-------TGGGCAGGAATGGCACACAATATCAC---ACATGGTTTTCTATATTCAAAGCAGAGTCTAGCAGAata
s HiC_scaffold_1 143564801 1334 + 233722169 GACTATAAAGAGAAGCATTATCAAACAAGGCTTGGG-CATATGGGTTTTACAGCaataaatgtactttttatcactCTGTAGCTCCAGCTCTTGTTACTTATGACATTTAGGAAAT--CATATACCTCCAAGGTATCCCCGttttaaaacaagaataataGCAGTTGCCTTATAGTGAATGGAATACCAAGGCAGCTATTTCACTGCTTGGAATAGACTCA--TCTTTATAAAATATCAATGCTTACTGGTCATATTTTGCCTTATTTCCTGC-CAGTAAATATGAACTTC-----CAAGTAGACTCTA---AGTTCAAATGCTTGTGCCTTTATTACATGTGTTTAAAATAGTTCCTTCTTTCCACTATAGCTGTGAGGTGTTCTTAGGTGGATCAACAGAC--AAACATTAAAATGATACCAGTTTACaaaatggaatttt-ctttgcCCTAACAATATGTAAATTCTGCTCCACACTCTTATCTGATATATTCTAATTTCTCTTCtat-agaaatt----atagaaatattatatTCTATATAATATAGAATAAGGTTCCACATCTGGTGTAGTGACCTATGCTGAAATACATGGGCTACAGACTAAATTGCAAGCTTCACATTTGCCATCCAGTCACTAACCATGTTTGAGAAAGTCATTTAACCTTTTTGAACCATTTCTCCAATGGCAATTGGAGAAATAAATTTCCTCAAAATTTGGCATA-----AACACTAATagacatgatttttaaattattttctgaatataaaatatcataC----CTCTCAGCTATCAAGAACATCTCCCAACTTTTAAAGTGAcaggtttaattttt----------aattgggATCTGCTAGCATGATTATCAGCAACACAGACTGGTTAATTAATCGATTGATTGATCACTTTGTTACATCAACCTAGGGGTGGGAAAGATGTGATCTTACATCTCACCTGAAAGACATCTGCATCAAATCCTCTTCCACTTTACAGTGCAAAAGTGTGCTTCTGTTAAAGTGCctcatttacaggaaaaaatagCTCCCTGCCAAAAAAGAGCAATGTAACATAATTACTCTTGGCTCAGAAGCCTACTATTAGTTTATTCAATGACATTCCCAAACGGTGCTCAGAGAATGTGACATGAAACA----TTTTTGTTAGAAAAAGCACCTTTCTGCTTATTTATAATatagacacaaaataaaaatatgaatgttaGAATCCAAAGCCTACATTTAACAATGGCAAACTTCTTGCCACATAAATTCCTTAGATTTCaagcc-tttattttgttttgtggttgtGAGCAAGA--GCTATACAATATTACAATACA-----ttctgaaatcaaataaaaaattagcagtatA

a score=18409
s chr3           156435824 533 + 160039680 ATTCTAAAACTTTAAACACTATCTGGGTATATTGTATTTCAT-TTGAGAAGAAATCTTCCTTTTACTTTAAGCAAATGCATTCTTAGGTTTGGACAT---CATTCTTTTTCTGCTCATTTCTATTTAACTTGAAGGAAGGAAGCACAAACACATGGCTGATTGAGTGTAAATTCTGCTGTCATGTTACAATTCCACAGATATTTT-CCTCCCCGATGGGTTAGTCCTGATGTGTCC-AAGCCTGTCACAAACCACAGAAAGGTTAAAGATCCTGTAATTTCTATGTTGGGCCCTCTGTCAAGTCATGTTTGCTGTCACTGAAAGGTTAGGTGGGGAAGGAATGGAGGAAGGTTGAGTGAGCTGTAC---ATGTGCCAGGAAGTGAAA-------GCCCCAGCATGCCCCAGTTCTAAGCACTGAT-AGCCAGACAGATTCTCTGTCTGCTGTCACTTATAGTTTCTCTA-AGAACATAGAGTTTAGGTCTGAATCTTGGACAAATATTCACACTCTGGTA-CTAAGATACAAATCACTCACAGATGAGTTTC
s HiC_scaffold_1 143580170 544 + 233722169 attaaaaaaatgtaaatgatccCTGCACCATTTATGCTTCTCATTGAGCAGGAGAGGTCCTTCCACTGTAAACCAATGAGCTTTGTGGGTTGAGAATTGCCATTATTTTTCTGTCCATTTAGATTTAACTGGAAGGGACTGTACAAGAACACGCGGCTGTTTGTTCCTACAGATCACTGTCATATTATAATTCTGAAGGTATTTTTCCTCCCTGATGGATTAGTCCAGATGTGTCTGAAACCTGTCACAAATCACAAAAAGGTTAAAGATCATGCAATTTCTGTGTTGGGCCCTCTGTCAAGTCATGTTTACTGTCACCAAAAGGTTAGGCCCGAGAAGCACGGAATCAGGTTGA-TGAACGGTGCGGAATGTGT--GGCAGTGAAAGAGAGAGGCGGCAGCGTGCCCCAGGTTCCAGCAGCGACAAGCCAGCCGGACTC-----ATCCTGTCACTTTTGGTTTTTCAGCAGCACCTTGCTTTAAAGTCTGCATCTTGAACACCTCTTCAGGCATCAGCACCTTAGAAACAAATAATTCCTTAATATGTTTC

a score=61421
s chr3           156447396 3462 + 160039680 TAAATAATTGTATTAACTTGATAACTATTTGAAGAAGAACCATTTTAGAGGAATAATTGAGAAAAGTCTAGGGGAAAAACTGGAGATGTGTTAAAAGGCCCTCTGTGGCTTTTA---AAGAGACATTTAAGTCAATACT----------------CAGACAAAAGGCTCAGTAAAGAGA------AAAACAAACAAAATGAGCCGGAGACACTGTGGATG----------------CAAGCAACTGGAAAGAAATGCTCCTTGGAAGGAGA---GCTTGGT---GTCCGAATGAATCCAAGTCCTTTAGTACCTGTATTTTGAGCTGTTTCTATTGTTCTTAAAATGACTGTAT-TCTATTGTTGTTGCTATT--TTGGATTTTGCCATACTTTGTCATTTTTAAGGCC--CGCAACATGTAGAAAGTGCTCTGCTCCAGTGAACATGC-CAAAGACAGGATGTTTACTATACATAGGTTAGGAACTATAAACACACCAAACATCAAACAAGCATTGCTGAAACCTTCAAATTATGCATCAGCTACGATTTTAATTTACCGAAGCTGTTTTCTTAAATCTGTAGGCTTTGTTCACAGATGGCAATATTTAAATCACAGAGTTAACAGAAAGTGATAAGATCTTGGTAGTGC---------------------------------------------------------------------------------------------------GATGCCTCCAGTAAACCAAAACTGTGCAAACTCACCAATTAAACTTGACAACTCCTTAAAACTCTTAATCCTACAGATGCAACACAACAACTCCAAAGTGGGA-TCATAC-TGACACGT-GCTTTCTGTTATTTCTCTCAGCTG--------------------------TCCTTTCTGAAGGTGGCACACATCAGAACTACAT----GGAAGAGACAGCAGAAAGTCTAATTAATATCTGGGCACCGGGAGCAAAACCTTGTCTCTGTCAA------GAGGGACTCAAAGTAAGAATCTTCAGACCTCAGACACATCCAACTAGACTGGCTTTGTGTCCCTGTGCCTTTTCCTTGTTCTTGTTTAAGGAAAAGAAACATCACAGA------ACCAAAAACTGATTTAGAGGTTTTTTTCTGAAATCATATTCACAGATTTATTTTAAAATATGACTTTGTTCTCCATTACTGGACAATACTATTTTTATCTTGCAGAATTTAA----TCTCTTAT----CCCTAAGGTGTAAAtcagctccacaggatcactccaggttcctgccttgagatcctgccgagacttccctcagtgaaggaatatgacccggactgaccaaacaaaccttttctctttgtaatttgctttcattgtggtgttttatcacagaaacacagaagaaacttgaagaAAACGTGTTTCTTCCTTACCCACTCCATCAGTTCTTCCTCTACCACTGGGCCATCCTTATACAAGACCCTCCTATTTCCGTCTTCCATGTCTTTCTCTGCGTGACCCACTGAGTTTAAGAACAGTTACCTACCTGAGCATGAATAGTGTATTATTTAATGAAGAAGGGAGACTTATCATTGGTTGCATCACTAAATATAATGACGACTTTCCCCCAAGGAATGAAAATTGCCATAAGTACTTCTGGGAAGTGTGGAACTTCTCAATCTTCCCCATTTAGAATTGACAAGATATGGTTCTATAATACTAATAGAGTGGATTTCATAAATCATGAAATCAGTGACTG----------------TTAATATCT-GTGATACAATAATCagtagtagtaatagtagtaatattagtattaTTGAGCTG-GATATTTTAAT------CTTCTCATATAGAAGAGA------------GCTAACATGCTAACAGAATCCTACAAGGCTCTCTGCAAGTGTCTAAGTCAGTGATCATCTCTGCTGTACGAGTTTGTGCTAGAAACAGACAATGTTGTTAACTGGACTGTATGTCTTTCT-TTTTGCAACTGGAATCAAACTCTATTGCATCAAGCCCTCT--GGTCAGAGCCATGGTAACAGACAGGATTCTTTGTCCACAGGTGGATGAATCTTTTCAGCAAGGGGTGGTACTGAACCCCATTGAACCCTAGCCCAGAAAAATTCAACTGCTATTGTACCTATTAATCTAAACAGTCTCAGAGACGCCAGATGGAAGAGTAGTTCACAGCCCCTCAGCATTGTTCTCTTGCTAATGTGAATGGTAAAATTATACTGAATTTTCTATTTTGTTCATTTTTTGCCATGATAGAACTGAAACGGAAGGGGAAAAAGAGTATATGGGATTATAAAAGACTCTGTTAAAAAACAAGCATCCACATGGTAACAGCAGGC-ATATTATTTTAAAGCATTTCTATAGAAAAGAT-TTTTTCCATTGTGTGTAATATTTAAACACATGCAAAAAG--TCATTTTACAGAGCATTTC-CCCATAGAAAGTTGTGATCAGTGTGGTTTGTCAGTCTCTCTGAGAATTGGAAGTCTCACAGTCTGTGCTTCAGCTCACATGTCTCTCCTCACATTACTGCTTTTTATAACAGGGAGAGAAAGGCATGTTGAACATTGTAAAGAAGTAATAAAATAGCTTTTAAATAAAGAAATATATTATTGTGAAGTTGTGTAGACATTGTAACTGGGAAATATTTCATGACATGTTGCTGTGTCTATTCATTTGTGGAAATGTTTTAAATTGTTCAAAAGGGCTTAGTTTTATGATTTGGAGAAA-GGTTAAGTTTAGTGCAACAGTTTGTTAAAAGAGGGCAGCTTAG---AAAAATGTACTTTCACTGCATACCTCATCTCTTAATA-GTTTTTTTTCCAAACATATTTAGACTAGATACTATTTTCCACCAAATAGAAAATTAAGTATCAGTTATAGACATTTATGATATCTG--CATGAATACATTCTCACTGGGGCCCTTCATTCACATCAGTTGAGAAGG--AATTACTCCATTGAGTTTGTCAAAATT-----CTCTTCTTCTAGCTGTATAACTATAGCAGCCACCACCGGAGTCACCAGAATGAGTATA------------------CAGGGCTCAGATAATGAGCCACTGAATGCAAGATGCAGTG------ACAA-AGTTTGGGTATGGTACTCA-----GTGTGGCCCTTGATGCCAGCTCTTCACCCTGATGAAGTTAGTTCAGCTTCATCAGCCTGAGGGTTTTAGTTTGTTGTTGTTTTAATCAGAAGAATGGGAATAACGAAGAACTTACTTCTTTAAAAATTAAA----AGTAGGCACACTTAGTTATTAAGAATCTATTTTGCATTGATTAAGCATATAGCATATTGCT----ATTATCTATTCTAACTTTCATGAAT-------GTTCAAGATAATGTATTTATATTAAACCAAAAC-AACCCCTGCACATAAAAACCATGTAATTACTAGAAATGTCAGGTTTTCCCACAGGTCCTGAGCAGT-----AAGTTACATT---GCTCTCAGGAGCTTCC-TAACTAAGATAAAG---TTCTTGCATATACAAGTAGACTGTAGAATTTACTCATGTCTAAATATTCTTGTTTTATTAGTATTCATATATAAAT---TATAAGTATACACAT---------TATATCTA--TAGTTGATCAGCTAGCTCTGTGGGCAC--ACAGCATTGCTTCTGCAGTAACTTTTCTGAAGTTGTCATT----CACTTTGTTTTTCCCAAACACAGGCT
s HiC_scaffold_1 143584359 3280 + 233722169 taaatagtt----taCTTTTGTAATTATTTGAAGCAAAAATACCTCTGGGGGTTGACTATGAGAAACT--AGAGAATATCGTAGGACATCTGGGTAGTCCCTCCGAGTCTGTTATAGAAGGGGTATTTAAACcaagactgaaaaaaacaaatacacgGAAAAAATACAAAGTGTGGAGATGAgtgaaaaaacacaagaaaatccaGGGGTAGAATGAGTGATGATGTGTTAGGTCTCAGACCAC------GCAGGCTTCCCAGGCAGGAAACAAGTTTGATTTTGtcagaaaaa-------------------tgtatttgatgTGCTTTTCCTTGTTCTTGAAAGGACTGTATGTCTGTTGTTAATGTTACAGATTCTATTCTTTTGGTCTTTGTAGTCTTTAAACCTGTTGGAATGTTTACAGGGTATTTTGCTACACTGAGCATGTGCAAAGGTATGAT----ACTA-ACATAAGAAAAGGA---TAAATACATCTGACATGAAATAA--AGCGCTAAAAGCTTCAAATTATGCAtcagttaagatttta-tttacagaagctgttttctta--tctgtagGCTTTGTTCACAGATGGCATTATTTAA-TCAC-GAGTTAA----------------------AGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAC---------------------TGGCAACTCCCCAATTAAATTTGACAACTCCTTAAAACATTTAATCCCACAGATGCAATATGACAATCCCAAAGAGGGAATGGTACATGAAGTATTGCATTCTGCTCATTCACttagctgggtttttttttgttttgtttttgttttttttcctgaagacAGCACA-ATCAGATTTTCATTTAAGGAACAGACAGTGAGAAATTTACTTTGTATATAGACACCAGATGCAAATCTTTGCTTTGGTCACTTATTTAAAGGATACAAA-TGAAAATCTTTGGGTTTTATGCATTTTTACTTCAACTATTTATACatctttttgctattttcttgtttatgttaCAGT----GAAGCATAATAAATTGCAAACTTCAACATGATTTAGCAATTGTTTCTTAATAGCATTTCTCCA----------AAAATATAATGACGTAC--------------ATGATATTGCTTAACTGTAGATTTTTAAAGCTCTCTAATTCAGCCCTATGGTTTAAATTAAACTTTCAGG-----------------------------------------------------------------------------------------------------TAGCTGTGGTTTTATATTCT----------------CTTCAGGTAGACATG------------------------------------------------------------------------GTGTTCGGTGTT---------GTGA--------------------TTAATCATGTAAGCCTGATT--TTTTATATTTA----------GAGCC-------------CATTTGTAAGTGCAAG-------------TGAGAAATGAATTGTGCCAAGAGC-cttcag---------------ttctatttt----------------------------------tattaatagaGTAGATTGCATGGATCATGGAAACAATCTCTAATTTATAAGAGTCAATCTAATATCTTGTTAAACAAGAAT------------TATTATTGAGCTTAA-ACTATTGAAGTGTGCTTTCCTAAAGGGCCACTTCCCACACTGAAGAATTCCGCCACGAATGCTAGCATGTTAACCACAAACTAAAGGGCTCTTGGTGGCTTGGTAAGTTACAGAACATCTCAGCTGCATAA-TTCATGTGAGGAAGAGAGGGGCCAGTTAACTG--CAGTGAGTCTTTCCGTTTTGCAACTTGCAAGTAACTCGCATGCTCACAGGTCTCTTCACTGGGGGCCATGGTAACAGACGGACAGCTTTGTCCACAGGTG-ATGGCTCTTTTCAG-AAAGTGCAGGGCTGAGAACCAATAAACTGTGGCCCAGAAAATCTATCCTCCTATTGTACCTATTAATCTAAACAG-ATCTGAAGTGCCAGATGGAAGAGCAGTTCAAAGCCACTTGCCATTGTTCTCTTGCTAATGCCCATAGTAAAATTATACTGaatcttctattttgttcattttt-accaAGGTAGAACTGAAATGGAGAAGGATAAAGAGTATATGTGATTATAAAAGGctatgttaaaaaata----tttacatggtAACAGCCAGCTATactattttaaagcatttctaCAGAAAAAAGAGTTTTCCATTGTGAATAATACTtaaacacatgcaaaaaaaataattttaaagagcaTTTTTCCCACACCAAGTTGTGTCGAGTGTGGTTTGTTATGCTTGCTGGAAATTGGAAGCCTTACAATCTCTGCCTCAGCTGACAC-CCTCTCTTCACattactgatttttataatgGGACGAGAAATGCCGGTTGAAAATTGTAAAGAGGCAATAAAATAgcttttaagtaaaaaaatatattattgtgaagTTATGGAGGCATTGTAAATTGGCAAGGTTTCATGACACACTGCTATGTCTATTCATTTGTGGAAATGTTTGAAATTGCTCAAAAGGGCTTAGTTTCATGTTTTGGAGGAATGGATAACTTTAGTATGACAGTTTGTTAAAAGAGgcaaagtaagagaaaaaatgTTCTCTTAGTGAGTAAGTTACCTTTTAATAGGTTTTTCTTCCAGATACATTTAAACTATGCAATATTT--Cgctaaat----aatgaaatttaagcTGCAGCCACTTATGATAATAGGTAGGGAACAAAGACCAACTGACATAACTCATTCATATCAACCTCCAGGGCTGGCTGCTCAgctgttttgatcatttttttttcttctcctttcatctGAAAAACTATAAGAGCAACCACAGAAATTCTCATGATGTATGTAAGATTGTTAAAGTGGGAGCAAGTGTGAAATAATGAACCCTTCAAAGT--GATGCAGTGTGGTACATAACATTTTGGGCTTGGTAGTCAGAAATGTCTGGGTATTAGGGTTGGCAGTGCAGTCTGG-GAAGGAAAGTCAGCTTCATGACTCTG-------TTGTTTGCT----------------------CAACAACTA---------CTGTTTACAAATTAAAGTGGATAATGTGCATTGAAGTCCTTACAAGGCATTTggcataaaataaacata----attttattagaaatGATCTA-TCAAAATCTTTTGAGTTGATAGCACTCAAGGCAATGTATTGATATATAATCATAACTTAGTCATGAAT---AAAACCATATAATGAATCCAAATATAAAG----ACCAAAGA---GAAGCCATTTTTGaagttgtattttatcttttattgccTACCATATTTGTGATCAAGGAATTCTCATATATAGAAGCATGTTGGCAAATTTTGCTACA-ATACATACT-TTGCTATATTAAT-----TATGCAAATGTCTCTAAATACACACATGTGAATCTGTTTATCTATCTAGTTGGTTATCTTGA---ATGAGCAAAGACAGT-TTTCATTTACAGTTAGTCCTTTGATATCTTTGTTACAGTTCTTTATTTGTGCTAAACACGTACT

a score=13088
s chr3           156453519 962 + 160039680 TAGTAAAATGATGAGTCAAAACT-CTTAACATAGATTGACAATTGCGTGAAGTGG-ATACATTAATCACAAAAGCATATGGCTTCGCT----GGATCACACTTTCAACAATTTCCATTCATTCAATCTGAAAGCTGAATGGGTCTGACTCACACATCTATTTATTGGCTTTCCACATAAATGCAAATCTGTAGCATGTTA--TATGATTATATATT----------TGTATGTTACAAATCTGCACCTAAAAGGCTT-GTCATTAAAGTGTGAATTTGAATGCTC----------TAGTC-ATCTTTAAAAATGGAT---GGAAGAATCCTGGGACCATATATTGTACAC-TTCAAATTTATTTGTATAAGACGCTTTATACCCTACACATTTATTCTA--CCTGGATTAGTTGAAGATATAAAATTT--AAtctctctctctctctctctctctctctctctctctctc-------gtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg---tgtgtgtgtgtgtgtgtgtgtgAAAAGACTCCAAAGACAAAAGCAGCTCAAATCATCTATGGAATGCTATTAATT--TTCCTT-------GGAAT-------ACATCTTGCTGGCTTATG-GCACTTAACAT--CTACGTAACAAATTAAACCGCTCCCTTTCTGCTTCTTTCAAATGGATATAATTTAATTTTAAGATGCAGCTTTTATCAC-TGAGTTTTCAGGAAGTAATTTATAAGGTCAGACCAGCTCTAATCAGCACTTCTTATAAATTTACTGGAATTTTTAATATCGTTGTGATTTTATGTTTTCCTGAACTATGTCAATACCTTTAATATA--AGATAATATGTCCTCTCTTT--TAAGGATGAGTTATAATAACCACATTTGTGCAG-GTTACTTTGTGCAGGCTCCTGAATGATATGTCTAATAGATAGTCTCTGTTCTTTAGTGTTGCC-TAGACTTCTTT-TAGCTGTCCTTATCCTCATCGGCTCTCAGCCACA
s HiC_scaffold_1 143594521 994 + 233722169 taataaaacaataatttagaAGTGCCTCAAATGG-TGCAAAGTTATTTAAAGTATTACATTTTAATCACAAAGCCTTATTCCTCCCCCCTTGAaatcatgttttaat--attttgattcattt----tggaaattctgtgagttagatttatatatttgtttattgcttTCCCAAAGGAGCACAAA-----AATATCCTGGCTATGATTACATATTACTGACTGTTTGTAAGTTGTAAATCAGATCCTAAATTTTTTTGGGATTTTGATGTGAACTTAAA-ACTCCTTTAAAAaatagtctatttttaaaaatgcatcttggCACCAGCCCAAGGAGGCATAATATACacattggaatttttttttatggaACG-----TATCCTACATATGCAATCTGTTCTGGGGTTAGCTGaggacataaaaatttaaattcagcacacacacacacacacacacacacacacacacaccaatagggagggagagagaaaaatagagagggaaggagggagagagaatgagagaactCTAAGgatttct-----tggaaaaaaataacTTAGAAAACAGTAGCTCAAACTGTTaat---atttcattaactatttcctTTTCAGGTGAAATTTTAAAACCATCACGCTTTCttatatgcatttaacatatctCTTGGATACATGATTCcttgacatttttgtttcctctgactgtgtatactttaattttaagATGCAACCTTTATCAAATAAATTTTCAGGAAGTAATTTATAATGTTGAACTAGCTTAAAACAGCACTTCTTGTCAATTTACcggaatttttaatgttttcatta-tttatattttgctga--tACCTAAATAAGCTTCACATAACAGATAACATGCCTACTTCTTCATAAGTCTAAATACCAATGATACCATTT---CAGTGTGATCCCGTCC--TCTCCTGAA---------ACATAGATAATCTACGTTCTTCAACTTTATAGCAGACTACttcataactttcttttttgGCATAGCATTTTAGCTTCA

a score=30847
s chr3           156468568 1552 + 160039680 ATTCAAAAGGAATAAATGATAACAGGAAATAAAATGCTTTCAAATTGAAAGCTACTTT-----ATTAGTGAGCACATTAAT------------TTTAAAAAGCATACCATTAATTAACTAGAAATGCATTTTCCTCTTGCTTTTGAGTAAGAATACACAGAGAACAGCTGTCAAATTCCTTACAGTTCTCATACAGAATGCCATGTCCTCGCTGAGTTTTCCTACCAGTTTCATTCACCATAGCGTAGCTGCTCTTCCTAATGTGGCTTATCAGAAATCTTCCCCGTCAATTTAAGAGAACAGGCATTTGCTCTTATCTATTATGCAAAATACAGTTGTAATTCTTAAAAGCTGTTCATTATAGATTTATCACCACTGGCTTCTATTTGTCTAGACGACTATTTAAATACCCA---CTCCTTTTATTCCAGTTCT--CGGGAACTCATTATA-----TTTATTTGTTTGGCACAGAGATTGTAGTTCTAG-CTTCCCATCCAGGCCCAACTTTAATGCCCAATCTCAGGCAACCATAGAC---AGCTACCATAGACAGCATCCATGCAGTAGACAGACCCTTCTGGGGGTCTC--TAGCTTTGGTAAAATGACTCTAAATAGTAT-----GAACCATGAAGATGG-AAGGCCAATTAAAAGCTAAGTTTGTCTGTCCTTAAAGACACAGGGTGGTCATACCTTCCATTAAAGCTGGTAAAGAGCCCACATTTGCAGGCAAACATGGAGAAAAGGGGAGAACAG-GGTATAACCAGGCTCTTCACCCACTTCTACCTCCCCACAACAGAGCATCTGCTCTTTCCATCTAAAGCATGCACAAGGCAAAGGTTGACCCAATCATGAAGATCTTATTAGGTAATGAATGTTTCCATTGCAATAGCAGAGAGAAAGTAGGCTAGGAAATTAGAAATAACAAAATTATGGCAGCC-TCTCAACCATCTAAGTATTATTCACTAGTTCCTCGCAAAGAGATAGG-------CGGCCTACCTACAGCT---GCCATTAGGTTCCACACAATTTGGCAAGAGTAGTATTAAGCAGCAGATGGATGTTGCTGTTTGGTTGATAAACACAGT-AGAACCCATGCATCGTATCTATGTAATGATGAAACTTAACCTCTCCCCTTGATTTCTTCTTCTTCTTTACGTCAGG-CATTCGGAGTTTTAAAGGAAACAGAAAAAT----AATATAAAAATAGTGCATATGCTTGCACCTGATCGACTAGATGCAGCATTACCCCTGGAGGCTTGTCTCTCTTTTTTTCCTCTTCCGTT--GTGTTCATTTCATCTTAATGTCAGCATAGACTCTGGGAACTTTCTTACATAATAAATCAAATGGAAATTTAATATTTGTTCCTTTCCTAAGCGCAGATGTTTAACTAGATAT-ACTGATGG--------TCTCGCCATGACCACAGCACTGTAGAAATCACCATTCTCACTTAACAGAGAA------TCTGGCACAA----------------------ACAATGAGTTTTCAGAAGCCAGCTAAGAAAAT--TGTTACTTTTAGGTGCTTAAGTTCATTAAATTAATTGCTTT---TACATCAGGATAATTGACAGAATTTGAATTTCTGTCAGAAAAGTATAGGAGA
s HiC_scaffold_1 143610368 1503 + 233722169 ATTCAGAAATGCTAAATGATGCAAAGGAAGATAATGCTTTCTGATGCAGGGCTAGTTTTTCTTATTGGTGAGTAAAATGATCATCTTTagactttaaaaaatcata--gtcaattaaatatatgtaattttttttccttcttttgaggAAGAATAGATATCAACAATCTGC--------------TTCTGATGTAGAATGAATTGTGCTTGGTAACACTTTTTAATAACTTCCTGTACTCAAATG---CTATTTTTCC-AGTGCAACTAATGAGAATTCTTTTTCATTAGTTTGAGAACACAAGC-TCTCCCCTCATCTATTATGCAAAGCACAGTTGTAATTCTTCGA-GCCATCCATTATAGATTTATTACTGCTGGCCTCTATTTGTCTAGA----TACTTAAATACCCAGGCCTCCTCCTGCTGCATTTTTTTCAGGAACTCATTAcacttcttttatttgtttggcACATTGATCTCTGTTCTGGTCTTCACTTCCAGGTTTTGCCCTTTT-----ATTTCTGGAGCCAGTAGAGCAGAAGGAAGACTGACAACTTTCGTTTAACTGTTAGCTCCTTCTGGAGTCTTCAGTAGCAGCAGTAAAATGACTCTACATTCTGTTTAAGGAACCATGGAGATGGTGAGACCAATAAAAAG-----TTTTCATGCCTGTAGAGCAAGAGGCCAGTCTTGTTTTCTATTAAAGCTGTTTAACAGCCCACAACCACAGCCAGAT-TGCAGAAAGGGGTGAAATAGTGGTAT--------------CCCACA-CTGCCTTCC-GTAATGAAGCATCTGTT---------TAAAA---GCACAAGGCAAAG----------------------------------------------------------------TAGGTtagggaaaga-aaacaggaaaattatgGGAGCTATTTCAgcaatttaaatattattcattagtg------agaaagaaaagaacaacacaGCTTACCTACCGTTACAGCAATTAGGTTCCACACAATTTGGCAAGAATAATATTAGGCAGGAGatggat-tttctgtttggtttgtaaacacaatgaaaatttctgtattatttctatagaGTGCTGGAATTTGACCTCTCTCCCAGAAGTTGTTTCTCTTCTTACGTTTGGACATACGGGCTATTAAGAAAGGGAAAGAACTTTCAAGTGTGAAAGCAGTTAGCGTGATTGGGGCTTATAGA-TATAGATAGTTTTTTTGCCAGGGGCACTTTTAACATTGCATATGCTTCTGTTTATCATGGATTTGGTTAAGACCCTAAAATACAGCTTGGATACTGTCTTacggaataaatgaaaaaaagagttaTATATGGttccatattt------atttgtttaactaTCAGTAACTAATAGCCAGTGAATCTTATGATATCCAGAGTTCTATGAAAACTGCCACTCTAATTTGTCCCAGACTTGAATTTTATCACTAGGAGACTTGATTCTTCAGCTTGAAAGTGAGTTTTCAGAAGTCATCTGTAAAAATGCTATTGCTTTTGAGCGATATAACTCATTCAGTTAA--ACTTTCAGTAAATAAGGATACTTTAGAGACATTCTATTTCT----GGAAAGAATGGAAGA

a score=34908
s chr3           156472473 864 + 160039680 TTTAAAACTGAATATAGAAGGATACTTTATAGGCTCATGTGTCACATCACTGACCTTTTAGAAATATTTCCAGATACTTTTGTAGTTTGTGATGTTTGTGACAGAAGTCTATTAGGACA-AAATGTCTGTCTGATGCTTAGAAAAATTATGATAATAAGATGTAACCCAAATTTTACATGCTGGTCGAGATATGTGTTGTCATTAGAATATCCCCTTAGCTGTGGATTTGAATAAC-TAAAATATTTCTTTGGCCTCTAGCCATATGTATGTAGTCAATATCATTTGCCTTTTAAAATTCTTAACAAGGAACCCATTCATCTAACTTATACCGCAACATTCGACAACAGCTCCAGTGTATAATCACCCACTATCAGTACAGCAAAGAGCCTCTATGTATTCATCAGACACCACTATTAATCATGACCAGCTTATAATGGCTATGCTTACATCTCCCTAACAGCTTCACTCTGTCAAAGAAATCATTGTAGCCTGAGCTAAGAATTTCATTAAGTGCCTATTTTTCAGAGGCAACCCTTGTG-AAGAACATGGAAATACATGCACGCAAGCAGTATATAATTGCTCGATTATTTCACCACCACAAGTCTG-TTGAGAGCTGGCTTTAGCGATCCATCTTTACAATCAGAAACACAGGAGAACTCTTCAAATTTACTTCATtttaaagtgcatcaaaatatc--agaaaatagaaagagctttagaggaacactaatccgcttctaatggaggtct-agactgtcttccctttaaatgtatccaagcagccaaattgaaatGATAATTATAGATGCCAAGCAATGCATCTTAGTCCAGTGCATCCATAGACTTATTATAAATATGACTTTTTA
s HiC_scaffold_1 143612694 846 + 233722169 tttaaaatttaaaatgagaagatGGTCTTCAGACTTGCATGGCATAAGCTTGacctttta--aatatt-----gaaattttgtGGTTTATATTGTTTGTGACAGAAATCTATCATGGCACAAATATCTAAATGATTCCT-------TAATGAAAA-GGGATTTGACCCCAAATTTACATGTTCATCTAGAAATATAGCA-CATTTGAATGTCCTTTTTGCTCTGGgtttgaatattataaaatgttt----ggCCTCTAGCTATATAAATATACTCAATGTTATTTGCCCTTTAAAATTCTTAACAAGAAAACCATTCATCTCATTTATTTTGAAGCACTCTACAATAGCCTTAGTATATAATCATCTGCTAGCTGCACAATAAATAGCTACTATGTATTCATCAGAAGTTATTATTAATCATCAGCTTCTTATAATGGCTATGCTTGTGCCTCTCCAACAGCTTCACTGTGTCAATGAAATTATTGTGGATGGAGCTAAGAATTTCATTAAGTGCCTATTTTGTAGAAGCAGTTGTTTAGTAAGAACTTGCAGTCATATCCATATAGGCAATATATAATTGGTTTATTATTTCATCACCATAATTCTATTTTACAGCCAGCTTCAGATATCCATCTTTAAAACTGACAATGTTGGAGAAGACTTGAGATTTACTTCATTTCAAGGTGTATCAAAATAtcgtataaaatagaaaaaaa-ttataagaacacTAATTCTGCTTTAATTTGTGTCTCAGTCTTTATACTTTTTAGCTGT-TCCAAATAGCCAAATTAAATAGAAGGTTATAAATGCCAGTGAATGCAT-TTAATCCAATGAATTAATAGGGCCA--ACGGATATAACATTTTA

a score=46504
s chr3           156497171 2755 + 160039680 AACATCTCAGCATGGCAGTGTTTGAATTACATTCCATCATTACCTAAGTTCCTATCACTAAATAAATTAAACAAAACAAAATAAAGGTCTAGAAAAAAACAAAATAATCTACTTTTAAAAGCAGCTAACTTGCTAGGGGAATGAAATAGCTCCTGATATTTTAATTAGTGTGTCTTCTTCGGATAA-AAGGCAATGTACCAGAA-----GTAGAGGTTGTAACGAGACAGT-ATTTAATGAAGCCAGTGAGGACCTCCCCTTCGGCTTCTCGTTATTGGGTTAATCAGTGTCCCAGAAAGCAGGAAGCATCTCGGGCATCATTGCTGCCACTCTGGCCCAGAGGTTTGTAACACTAATGAGTATGGATGACACGGATGCATGACACACAAAGAAGCCGCTAATGTAAGCCCAAAATCTAAGAAGAAGAAATCGATGCGATTAGCA-AAGGTAAAATTAACTTGTCAATGTTCCTGTCATCTCAGACGCTCTCCTGCTCATGTCAGAAAAAGCCCCAGGAGTTTACACACCTTTAATTCTCTCTTACTCTTCATCAGGAAGTGTTGAAAGTCTTAGG-CAACCTTATAAATGGA---TGGTGGGAGACCAG-----GATAATGCTTCTTACTGGTCTCCAAGAATCCCTAA------AACTCAGAGAAGATGACAATATTGCCCACCTGCATTTTA--CTGAGGTCCTAGCACTACAAAGAC-ACTGCTGTATCTACCATGATCAATGGAAAAT-CGCTTTGAAAACAGATCTGCAATTCATTGTTTGGTGGGATGAAAGACTGATAGAGATTTAAATGATTATTTTTAATCAACTTGTAAGTATGCT--TTTCTTCAAATTAGAGAAGAATTAATAAGCTAACAGCCATAATGAGAAAAGCCCAGCACAGCCTAGCATACTCTATCCATTCAGACttctttccttattctgtctgacctttctttctctctccttcccattcttcctttctctcttacctttctatttcatttcctctttcctctattttcttctccttccttctctttccctcttctacctttcttacctctctcttttcctctttcACAGGCCCTCAAGGCCAAGTTCTTACCTGAG-GTTTTCTCCGTTTCTCC--AGGATATCTAAAACACAATATTTTCAAAATGAAGATGATGGGTGCTGACCTCCAAACACTGAACTTCAG-----TTTTATGATTGTGTCAAAATGGCTG--TTTCAACATCTGGAAAATAAAAGCAGTTT----------GCTAGATCCTGAAAGCTTACAAACTATTTTTATTATGATATTTCTGGAAGTACATGCTGCATGCATATTCATGGCCTTGAAAATGCTTCCTATTTCTATAGATTCCCTCCTCATTTGCAGGTGTAATTATGGATTCATGAATACAGCTAATCACTCCTAATGTGTCCCATACTCTAGCCACTGCATGGAAATTTTACTTGATTTTGTGATAAAATGG-AGTCCTGAATGAAGC----------------------------TCACTGCCTTATGTAATCTAGAATAGCCTTCAGAAATAGTGAGAGCTGTACAGAAAG-------TTAAAGTGGTTTGACATT-CATACTTGAGGGGGGTTGTAGAGAACTTTCAAGACTGGTCTCACGCCCCAAGCACACCAGTCTCCTGCATGCCACATGTGATCAGTAAGCTTTTCAGAC----GTATTATGACATCTCCTCTTAGTATTTTTTTTA-AAGATGTAGTCCTATGCTCATAGTATGAAGTTAATAT--TATTGGTATTAGTAC--ATAGAATACTTTTACATTTACCAGGTATAATAAGATTCTCACCCTGTTTCTTTTAATTGAAATCAAGGCCATTG---------TGCAAAATTTCCACCCC-TTTTATATTTCAGGAATTTGTTTCAGAGTATTTTCAA-GGAGAAATAGAAATTTACTATTCTTGTCACTTGTTGGTTGGATGTT--------TCTCAACTAA----GGGGCGCCATATAAACCAGAGCTCTCTCCTTTTCAAGACTCACAATAGG-CCTGAAAATGTTCAGTACCCTAGAAATATAATGTGTCCCAA-AGTATAAAAATCGTTCCATTAATGGGAAAGGAAAATGAAAAGAGTTTCTATGATTTTGTGACTTTCT--CTCTA-AATCCAAAA-----TTTTATCACCCCGAGTCTGTATAATGCAAGAGATCACCTGTAGGTGGGTCCTGACAAAGGAATCCAAAGCCCTAGTCTCCAGGCTTATTAAACAGAGCTCTAGGCAAA-GCTGTCAGCCAGCAT----------CAACAGTGGTTCCAGCTCCCTCACTCAGCTATGGTTTC--TCATTTTGCCTGCTTT---GGTTAACTGAACTTGGCTTCCAACTCTGTCTCTTTTACTAACAATTATCTTGATCATGTCACAGTTATCCAC-ATTTCCCCCCACATTT---CCCTTTTACTCCCAGCATCCACTGCCTTCTTCTCTG---TCCTATGTGATTTAAAATC-TTCCTCAATTCTGGATAAGCCTTACAAGGAATGGCTGGTGCCAGAT-----CCCAACCCCT---------------CCCCCACCCTGTGACTATGTAGAACATCTGGacctgtgta-agatcatttatctgcctcatgtagaaccctgattctctt--------------------------attctcc---------------------------ttattgttgtac----------agatgagcaaac-agaaggcca--ggttagtaacagtgtctgtgccacacagctcacaaa-caatgag--tAACACTAGACTCCAGAGA--GAGCAGTTGCTGTCACTTTATTCAGTGAATGTTGGTTAGATTGAAGTCAGTAGTATTTGTAAGGGAATG-------CACACTCACTTAAGAGAA---TGCTCATCAAGACAGCACAACAAACAAGGACCTGG
s HiC_scaffold_1 143629356 2808 + 233722169 AATATCTc--catagttttgttttaattatattgTATCA----CTCAATTTGTAAC-TTAATTGAATTAGGTGAAATATAGTGAAGATTTA-----CCATtagaaaatcta--tttaaaaatacctatgttgttaaaaggaagaaatagttCTTA----TTTAATTGGTTTGTCTTCTCTAGATAGTAAGGTgatttattagaatacaagtatGGATTTTAATGAAACAACCATTTCCTAAGGATA--------TTCCCCTTTGCCACATATTTATTGAGTTAATCAGTGTTCCTCTAAACTGCAAATATCTGAGGCTACGTTACTGGTTCCCT---CCAGAGGTCTGTAATACTAATGAGTATCAATAACATCGACATGTGATACACCATGAAGTTGGTAATTTAAGCTGTAAATCCAGAGACAAGACACTAGTGTGTTTAGAAGAAAAGACAATTAACTTCTCAGTGTCTCT-TAGCCTTAACTGAGTACCTGCTTGTTTTTGAATAAGCCCT--GTGCTTACATATCTGTAATTCTCAGCTACTGTTATTTAGGACAtaatgaaaatgtaaagacaGTCTTATGAATGGAGTGTGGTATGGAACCAGAACCGGAAAGGGCTGCTT----GTCTTTGAGCATCCACAACATATTAAGTGAGATGGAACCACAATACAGCCGA--TACATTTTAGCACACGTTCCCAACATCTAGAAGACGAATGGtttcttcaatattttatattaaaagtgCATCTTGAGAAGGGATATGCAATTCATGTTTTAA--GGATAAAA-ACTGATAGtgtttt-------tattgtaaataaatttgtatttacgTTCGTATCTTAAAATTA---AAGACTCAAGAGCCTAGAAGTTATTATGAATGACGCCAAGCACA------CAtgc--------------cttcctccc--------------------------ctccctgccattc-------------------------------------------atttttttctg-ttgctggggTGGAGATGGAGTGCAGTGCTGACCTTTCCTGT--------------GCCCCTGAAATCA----CTT--CTGAGAGTCAGCTATGTTTATGTTGAGCACACATAAAAC-TAACTTTTTTGAAATAAGTGCTTCAAATGGTGATTTCTTAATATTGTACTTTAAGATCATTTTCTGTTTTAGCCAAAATGGCTGAGTTCTGACACCCGAAAAATacaagtaactttttttttttggctggatCCTGGAtactttcaaagtatttttattatgatatttcTGGCAATACACACTGCATGCATATTCATGGCTTTAGGAATGTTTCCTATTTCTATAGATTTCTTCCTCATTTGCAGGTGTGATTATGGATTCATGAATGCAGCTAATCACTCCTAATATGTACAGCAATCCAGTCACTGCAGGgaaatttttcttgattttgtgaTGAAGTGACGGCCCTGAAGGAAGTTGAATGTCAGAAGTGCAAATGACAGAAGTCATTGAATGATAGAATCCAAAAAATCCTTTAGAAACAGTGAGAGCTATGTGTAGAAGTTGGTTTTTATGGAGTTTGCTGTTGAATACACAGGAG--------GAAAAC-----ATGCTCCCCTCCCTTCTGCAATCCACCCCACTACGACATGTCACACATGAATAATAAGCACT---GACACTGACACCCTAACACCacttctt-gtatttttaaaagaggatGAGGTTATCTGGACACAATCTGAAACTGATATCCCATTTGCTTGAGAACCAATGTAACACATTCTTCTTCCTGAAATTAAGTAAGATTCTGTCCTTGTCTCCACAAAGTATAATCAAAGCCATTGCAGAATGTATGCAAAAATAGGACCTCAGTTCACATCTCTGcaatttgtttcttaattttttcactaaaaaaataagaacttaaCTTTCTAATGATTGCTgtattatatttcatttgttatcTCAACAAACCATGGtatacaggaaaaagaaaatctcccttctgtccatgttgcacaaaagatttttaaaacatttggaaCTTGTAGAATGTATTGTAACCCAGCAGCCTGGAAGTCATTCATCTCGTGTGAGAAGAGA--------TGTTCCTGTGGTTTGGTGGCTTCCTGACACTACAATACATAGAGCCTCTTAGAGACCTCAGTCCTGTTAGGTGCCAGACAGGACTTGAACCGCATAGCTGACAACAGAGTCCAACTCCACAGACTCCAGGCTCATTAAAACTGGATTGAGGCAAAGGATGTCAACCTGCATAATTAAATGCCACCAGTGATT---GCTTCC-----CAGCTGTAGTTCCAGCCATTTCACCTGCTTTTCCAACTATCTCAACTTGGCTTCTCTTCCTGGCTTATTTTTTGACAAGTACCTTGATCAAAACACCTCTGTCCATGGTTTCTCCCTACAACTATGTCATATGGCTTCCGATATTCCCTCAGTTCTTCTCTGTGCTCCTGTCTAATTTCAGCCCATGTCTTA---CCAGATGTGACACCTATAGTATGATAGATACTGGACAGAGACCAAATTTCTATAAGTTTTGTAGCCTTTTCTTCCTGT-ATCATCTCACAGATTTTGacacatttgttgat--ttttttttcctcatttggaCTACtgattctttttggttttttttttttttttttttcgaaatTTCCGACATATAGAACAGCAGAcatgttttgttattgttgcatTATTATTTGGAGATCAGCAAACTAGAACCACAATGATTAGTAATTGTCTCAGTGCCACACAGGTAGTAAAGCGATTAAGCCAATATTTGACTCCTGAGACTGAATACTAAATCCCTTTACACTCAGTAAATTTTTGTTGAACTGAATCCCACTGAGACAGTCAGAGGATGTCAAAAACAGACAGAATCCTGGGAATTCTACTCACTAATGAAGTACAACAAGCAGGAAATCGG

a score=29986
s chr3           156503265 1289 + 160039680 ATTTGTGGCTTTCTTAAGTTCTGTAAATATCTGGAGTGCATTTGGAAAGACCTTCACTATGCTTCAATGATT------TTGGTATTTTAATATCCTGTGCCCTAGAGAGGAGCATGATAAATACACAGATTGTGAACTATTTGCATGATATTTATCATGTTCT-ACTTATTCCAATATAAGAAGGCACAAAATTGGTCGAAAAATATATCATGCTTATGCAGACACA----GGATGCAATTTTACACATAAACACAAGAATACAAAGTA-GGATTTGAGTTCCCAGATTCCCTGAATGCATTACATTGTTAAGGCAAACACATCAATGCATCCCATTAAAAAGGAAG-AGGATAGGTCATTAAGATCCTCC--AGATCTGCACATTCATAGATAGTT--GTTTGCTCTG--AGTCATTCCGCTTGGTGCTTTCCCCCTC--CTTCTGTAAATGCAG-AGGGCTTGCGTTG-TTCTCTACAATG-AAATAC-ATTCTGTTCTGGTTTCCTGGTTGTACATTATACTCTGAAAT--TTTCTGTTTGGTCCTTTGGGTGATAATTGGCATTCATCCTCCCTTTGCTTTCTGTTT------GTGTCCCTTTGTCACTTGTACTACATTTGGTTATGCAAAGCACAATTGGCATAGTAATCAATATTCATAGTTTTAGTTAATAAATATGGAGGGCTATTAATTTGCACATAACATGTAGATCTGTTAT--TAAAAATAACAATTATTTCTTTTTCTGTCTCAAGAATGAACACAAATGTCTTTCCAACCTTTTCCTGGAATAAGATATGGTAACTGTG--------------ACTACAGTAACAGGA--AAGACAGGTGCCATCTAAATCTGGAAAAAGAA-CAGAGTGAAATCTT-------------TATCTTTAGCTGCCAACAAGACCATTTTCTCCT-TGCCCAGATGGCATA-----CCTCCGCA-----CTGGAAATCAGCAGGCTTTAGCAACGAGATTAGAAACATGTAT---------TGGTAGGTAGGAAATATAGGATCCAGTA-GAAGAAACCACTAATA----AGAGTCTAATTGTCAAGTAAGACATATTATACATACTATGTATAATTT--AACTGAAATTATTGTTTCTCAGAATTTAGTGTTTTT-TCTATATGTATGCTGAAGATACAGGAAACAATAGTAAGCAGTCATTGGAAAAAAATCATAATGATAACTAACACAAATATAAATTATAATTGAAAAGTGTTGAATTGTTAGAGATTATCTAATAGTGCAGAATATTATCAGCTGGAGTTTGAGCAAAATCTAAACTACATAGAATAACATAATTGAGTGTTCAAAATT----TAAAACTTCTTGTTTT-ACAAGCTA
s HiC_scaffold_1 143646190 1350 + 233722169 ATTTGtggattt--taaatttcaaaaattgccTTAATG--TCTAAGATGCCCTTTAC----ACTAAATGGTTGCTGTCTTGGTATTTTAGTACCCTAATGTCTAAGGAGGAATACAATAGCTATAATGTTAGCAATCTGTTTGCATGATATTTactatgtttttatttacttttat--------gcaCAAAATTGGGAGGAAAGTACATCATTTTCCTGTAGACATATAAAGGGTATAATTTTACATATCAGCACATGATACCAAAATAAGGATTTAAGTTCA-AGATTCTCTGAATTCATTACATTGTTGAGGTAAACACATTGATGTAGCTCATTAAAAGGAAAGTAGAGTGGATCATTAAAATCCTTCCAAAATTTATCCATTTATAGACAAATCCATCTGTACTGAAAGTCATTCAGCTATAAG-TTTCCCCATCAACATGTATAAATGTAGCAagatttaaattgtttctctacaatgaaaacacaattttgtTCCAGCTTCCTGATTGTATATTATACTCTCTCATAATTTCTGTTTGGTCCTTTGAATAGTAATTGACGCTCAT----CTCTTGCAAGTTGTTTTACCAAGTGTCTTTCT-TCCTGTACATTGAATTCGGCTATGAAAAATACAATATTCTTAGCATCCaatattcatatttttggatgAAAAACTTGAAGGCATGTTAATTTGCTTTTAATATGTATCTCTTGTATCCTGATCTAATCAGTTATT--TTGTGTTGCATCAAGAATTAGTGCAAATGGCTTCCCAAAA-TATCTTTGAAGAAAATATGGTTAAAATGGGCATGAAAAGAATAACACAGTGACATAAACAGGGCAGGTGCCACCCAAGACTGAGGAGGGAAGCAGAAGAAAATTTTCAGTTCTCATAGCTATTATGATTTGCCCACAAGactatttttttctgtgctcAGATGGCATATTAAGCTTTTGCAAGCAGATTAAAATCAGTAAA--TtagaatatatatgaataaaatatatttaactgtATTAAAGTTAGGGAATATAAGACCCCATACTAACCTACTGTTAGTAACACAGAATGTAATTATCCAATTTGGC--ATTATAAATCATgtattcattttgaaaataaaatgaatattttcaagcTTTTAATGCCCTTATATATGGAAATATCTAGGAGAGAGCAGACAACATTAAGTGATTA--AAAATACAGACATCATg----tttggaaaaatataaattctgatAGAAATCTGCCTAATTGAATGTGGTTATCATCTAATCTAGGAAATAGGCAG-TAACATTTGAATAGAACCTAAACTATATTTGTAAAAATGTACcaattatcaaaattaaaataatgctccTTTCTTTGATAAGCTA

a score=23984
s chr3           156505879 2834 + 160039680 AGAGACAGACTTTTCTTTCCTGAAACTTACA-TAGACCTGACTCAGAATGGTTCTTACGACTAATTGAGGAAAGTATTCTTAGTATGATTCATAACTATCTACTAAT-TTCAAGGGTAGACATTTTGACCTATTCTTGGCAAAAGTAACAATAAATAAAGCTTCCTGGAAAAATATTTAGAA-TCACAATAAAAGAATATACTACT-GGATTTTATTCAGTCTGGTCTAAATGGATTGAACACCTACAAAAAAAAAAATAC-----CTTGTTCTGAGTGTGAAAAACACTTGAAGAGAAA-AAATTAAAATGCCTGTCCTTCAAACTCTCCAACAGAAACCTGAAGAGAATGATAGTATAAATGTACTATTATAGGTTATTATTATAACAA---------TCATTTATATATATATGCATTTTATTATTAAAGTTCTAGACAGAAAAGTTATTTGTCCCTGAATGTGTTGGACCTGCAAAGTAGCAAAGAGAAAGAAGAATTCTAGGAGAACCTGGATTAGTTAGCAATTATTCTTGAGTCACCAAAATGAGAGGGGAGGAGGGGCTTCCATAAAGTAAATCTGTTTATGAATCATAAACCTTAGATTGTATTCAGCCAAAAATAATCTGTTTCTTGGACTAAGTGGAAACCATTGGCTTCAGCTTGGTATAACCTCAGTTCAGTAGCTGACTTCTTACATA-CAGGTGATATGTTATATC-GCTGGCCATTTACTGCATCTTGCATTTAATCATTGACTTATATCACATCATTGATTACAAAACAACTAA--CTGATT--------------TAAAATAGCATATAACAACAAATAAAAATTTAAAAACAAGGGTTTTTTTTA------------------TTCTTTCTTGGTCATACAGTATCTCCATTCAATTCTATGTCATGTCAAGTTTGATGTAA--ATATAAAGAATAGACAGTCATgaggctggggtggtgtctcagtgagtaaagtgctggttctatgaatcatgaagatctgagtccataactccagggctcctgtaaaacctgtgtgtggtggcaaacatctgtaagactagcaat------ggCATATTACATATGCATGCAACACATGACCATACTTCCAATATGTACAATGTAATGATAATTATGGTATGTGATTGTTTTATTTTCAAGACCTGTGGATATATTTACTATGTGGTA-------------------------------------------------------------AGGGAGA-----------ATTAAGTT-------------------------------CCTTGGGTCCTCTCCTGCTTCCCA--ACCAGCCTACTGGCAATCAATCTTTAAAAGGTGTGCAGCAGATGAG-CAAGGTTGGTGTTAT----GACTTTTAAAGGATGCTGCACCCTCCCATAACCCT--TTGCATGAATAGTGGTCACAGCAAAATAAAGGCAA-AAGTTTACATCAGAATATAG--------AGAAGAACCAAAGAGCTCAAATGCAATTGTAGATTTGAAGGGTGTTTGACAAAACTTGAATGCCTCTTTGATACTTGATTTAGTCCAATGGCTAGAGTTACA--------TTTTTTTCACAATTTTGTCTTAGTGTTATTTATAGCTAAATATTCTAAGCTGT--AGGGGAGAACTATTTAAATACCAAATGGTTTGCTTTCTGTTTCCCACAATTTGCCCAGATTTAGATTATATTCAGCATTCCAAACTTTATCATTTTCTTGTTTGACAACATGTATGTTCAGGGTGGTGCTCATACCCTCTACATT-------TTCGGCATGTGCTTTGGGATTGA---TAGGACCATTACCAATCTATCTCAT--------GAAACTGGAAAAAGTGGGTGAGAGGAACCCAGATTCTGAATCTGCCAGTGCACACCTTTCAATCTACTAATGTTCCCTGAGAGCA-AACTTAGCGAACTTTGAGCGTACTGCTCCGTACATTTGGCTGGCGTATTCAGAATAGCTTGA-GAATGTATTTGCAATGTATTTTAAGGTCATATTTTTATAAAATCCATCTCAATCATAAAACTACCTTTTAAACTTACTTTAAAAAGTAAAGT--------TTATTCAAAAGC--TTGGCAAG------CTCCTCCTATCATTTTAAATTAACAG--ATGCAAGGATACCTTACAAAGTACATGACACCCAAATAAGCTACAGGATGTGTCATAGAAATATTT--------------ATAAAATAT-GAACACTAGAGAATAGTGTTTTTTTAATGAAGACCATGTT-ATATTTCCAAGCaaatttttattttacttttataaaaaatGTTGCATTTACTGGATAAAATTAACGGAATTATTACTGACTTAGACTGTGAAATGTTTCAGAGTCTGATTATAATAATTAAGTGACAGTTAATTAAAAACCTCTCAG-GAAGTTTTGCTGCTTCACAGTGACTGGCTCCTTTGTACTTCTGCATATTG-TCCCATTCACGACCTCAGGCACAGGAGGAGCAGCCTGGTTTCTGAATTTTTAATATGGCCCATACAGCT-TCCCATTCCCACCTATTAATTGGTGAAGGCACAGTAGCTAACTGGCTTCCACGTACAACACTAGGCTCCAGTCCTGAGTTTTCTTTTTC-AAAATTATATCAACTTAAGCCTTGAAGTGAGACCCTTCATATGCACTAGACGTTGCCACTGGAATGTAT-TTCTATTATGAATTTCTTTGTGGACTGAGGCGTCTACTGTTACTGTTGTATTTCCTTTCCTCCAAATTATTCTACATCTAAAGTAAACTCTGGGAAGTGTTTGGTTCATTGTCTTTCCAGATGCATGGGTGTTTC-----TTCTTTTGTGTGGGATCATTTACGATCTCTGGAATTTGTGTGTGTGTGTGTACGTACATATACACACATACACACACTTTACATATTCACTTCTGACAGAGTAGTTGATGCTGATGTGTCTATCATTGTGGATACTTAGTGAAAAAAAATCAC-----------TTTAGGTGAAGGACAAAGTCCTCTC--ATCTTCCTTCCA
s HiC_scaffold_1 143655048 2775 + 233722169 AGGCACAGATTTTGCTTTTTCTAATGTTACAATACCCCTAATTCAGAATATTGCTTG-----------AAAAAGTATTCTTAAATTGTTTCATAtcatttaattaatctttaatttaaaatagtttgaCCTGTTCCTAGAAAATGTAACAAGAAA--ATACCCTCTAGGAGAATACAGAAAAGCCATGAGGTAAAAATCTGTTATTTGAATGTTAATTTGTCTGATCTAAATGTATTGAAGTTCTACAAAC-------TACTTATGCTTGATCAGGggttgaaaataac---aaaagaaataaaatgtggtatcATTCATTCAAACATTTCAAtagaaacc-aaagagaaaaattg---------------GTAATTTATTATTATAGCAAAAAGCAcagtaatttttatataaattacttttaatgT-AAAACTCTGTAAAGGGGAGTTATTT-------------TTG-----------------------------------------------------AGTAAATACACTTAAGCACCTACTATGA------------------CATAAGTAGTGCCTG---ACAAACTATGTAATTTATCTT----TCATCAAAAGAAAA---GTTGACTGGGCAGAGT--------TTGACTTC---------------CAATTCCATAATTGGATTCCCACAGAGTTGGTGACATGTTATTTTTAGTGGTGATTTACCTC----TGC---------TAGGTATGTACCACCTCAGTTATCATGAAGCAATTAAATCCAATTAATTGAGAAGTcaagaaaatagtattttaatacatttaaaacaatGACTAAATCAGTCCTTTTTAAACAAAGACTAAAATCCACTTTTATTTGTATACACTACATCTTCTTTTCGCTTCCCATCACGGAAGGGTTGGTGAAAGCATGTGGGAAATAAGCA----------CAGTGGAGTGTTACAGTAGGCA----GCCTGTCCTCT---CCCAAAATGTCAGAAGTCTTAAGTGCAAGAATTTT----AAC---TATGAAATGGCAAAGAGGAATTAAACTGACCTTAAAGTGGGGAAATTACCCTTGATTACT-CAGGTGGT-GTGCTTCC----tgtggaagagacagacagaaaaggcATACGAGC-CAGAATTCTGAaaaccaaaagataaa---aacatggGGCAGAGACAGGCACAGACAGGCACAGACaggcacagacagacagagacagagacagacagacagagagagacagacagggacacAGAGTTTGTGTGTTTCCCACAGGTTTTGAAACTTTTGCTGTAGGATCTCTCCTACATTGCACCACCAATATATCAGGAATTAATTTTCAGTTCTAGCCCAGCAACTAAGGTATGGCCAGAGCAATCGAGGACTTT---AGGA-GCTGC--CCTTCCACAAATCTAGTCTGATGAATAACGCCTACAGCaaactggaggtgagaaataTGCCGAGGaagatagtttttaaaagcagaagaaaatagaacaaa----aatctaaatgttagaCTAGTTACTAAAAACAAGAATGCCTCTTTTTTAATGCAATTAGTCTGGAGGTTAgggttttaaaatttgtctttaatcAGCATTCTTTCGTAGGGTCATTTATAACAACACATTGTAAGCTGTGTAAGGGAAAAGCATTT---CATGAAA--GATTGGTTTCTATTTCCTATAATTTGCCCAGACTTAAATTATATTCCACATTCcgacttttatcattttttcttttg-ctaggtCTATTCTGAGATTTGGGTTC--TCTCTCTACCTTTATACCATTTATAATGTGCTAGGGGGCCCAGCTCTGTGGTATTAACAATCCACCTTGTAACTATCAGAGATGAGAAaagcaggttaaaaaaaaatcagcttgcTAAAATG--AGCATTCGTTTTACAAAATTCAAAAGCTGCTTGGCAGCAGAGTTTACTGAACTTTAAGCCTGTTCATATTTACCTAGGTCTAGCATAGTCTCAATAGATTCATGAATATACTTA-AATACATTCTAAGATC--ACTTTTATAAA--CTATGTCCATCATAGAAATACATTTTGAgctaa--tgagaaagaaaaataagacatattAGGCAGACACGATTTGCAAATTATCCCTTccactttcactctaaaataacaaatatgaaagaatattttaaataatgc------------taTGCT----TATGTG---TGTAAATAATTCTAAACCcaaatgaatgaaatacaaaatactagagaaatatgattttaaaat---gatcatgtCAACATCGTTAGGCAAAT-----CTTTACTTTTACAGTATAACTTG-ATATATT-GATAAAATAAGTGAACTTA-CAGAGATTTACTCTACAAAATTGCTTAGAATCTGATTGTAATAATTAAGTGGCAATTA---AAGCAGCTCTAAGTGGGTTTTTGCTGTTTCATATTAACTAGATCATTTGTATTATTACATATTGTTTTTGTTCATGATATCATGCATAGTGGAAGTAGGCTTGGCTCTGAA-TTTTAATTTGCTCTGTATAACTATTCAGTGAACTCCAAGGAGCTGATGAATGAACA-TGGTAAAATACTTACGAATCAAAATATTAAGCTACaggtttgaatttttattttctgaaattttgttaaC--ACATATTAAGGTGAGTCACTT-ACACTCAATAGG-ATTTcagcataaatatatataatattaaaaatcctTTAGAAGATTTGGTAATC-----------------TTTCATTCTATGCAATCACTC----------ATAAA--CAAGTGAATACTTGGTGCAATAGTATTTCAGTTAGATGCAAGTTTCACAGTCATCTTCATTTCAAAACATCC-CTATCTCTAGAATTtg-gtattt-------------tataaatacatgcTGAAAGTTTGCCGGTATTTTTCCTAT-------------CTTGTGTATCT-TCAATGGatata-ttagt-aaataaaatCACGCATACTATTATTTAAATGAGGAATAAAATATGCTCAGATCTTGCTCCca

a score=20776
s chr3           156516288 678 + 160039680 TCCTGTGGATATCACACTGTGGAACTTACGTAATAAAAATTCTGTTTCCTCATAAACATTGTTGTCCTACCAACACATACCTCTAGTTAATTATAACTGGTA-CTGTACATGGCCTTTC---CCCCAAATGTCTGTC----TCATTCTAGGATTAAAGATAAAGGGT-----ATTTTTGAAGGCCAAAAATATAACCTTTAAAAATCATATGTAATTCAACCCCTAAGTATAAAACCATAAAAACACAACCTTAATAATACTGTAAAATATAACA-----TCAAAATCTCCTCAGGGGCAGATCAACAC-ACTATAATGTTGTATTTTCTCC-------------ATTGTATCACACTGATCTCAGTAGATAATCATTTCCTAGCTATTTAATAACACCATGGAACTGGTAATTTGGT-GTTAAACATATCAGCAGGGACACTTGATGTCACATACAGCTAGGAGGGAGGCCCTTTCAATGAACCTATGGTCTTCTGTATCCAGG-AATAAGAATG-TTCATTGTGTTCCTCTG--TCATGCTGAGGCACAC----TGTTTACTGAAAGAAGTTTAATTG-----TGATCCCAAAGTCTGTTGATAAATTAAATTTGTAAG----TGAATGGGTTTCTACACAATGGGTCTTTTTTCTTT---TCTCTTGTTTTCAGAGTAACAAAACTGAAATATCTGATGGGTGCTGCCTGAGAAAATTATGGCAAAAG
s HiC_scaffold_1 143666273 725 + 233722169 TCTTATTGATATTACGTCAAAATATTTGCCAaataaaagt-ctatttttgaTGTATTACTATT-TTCTACCTGCTCACGCCTCTGTTAAATTATAACTAGTgtctttaaatatcttttttatccttcAAAGTCTCTTCTGGTGACTGCTgggttagaaaaaaagaaataataatatttgaagactgaaaatataaCCTTCAAAA-TTATATGTAACTTAGCCCCTAAGTATAAAATCATAACATCACAAGtttaataatacagaaaaaaataaaaaatacctacaGCCTCCTCAGGGGTAGATCAACATTACTATAATGTTGCATTTTTCCCCCTGTTATATCAAAGTGTATCACACTGGTCTCAGTAGAAAATCATTTTCTAGCTGTTTAATAATATCAAGTAACTAGTAatccaataaaaaaacaaatcagcagGGCTGTTTAATGCCACATGCAACTCCAAGAGTGTCCGTTTCAACAAGCCTGCAGACTGC-GTCTCTAAGTAATAAGAACGTTTCATTGTATTATTTAGGATCTCGCCGTGACACATTAAATGTTTAGTGAAAGGAA-TTAATTGGGAATGGAGCCAAAAGTCTGTTGAAAAACGTGAATTCAAAGATTTTGTGTAAACTTGTACACAGTCGATCTTTGTGCtctatgctttttgtttttacagcAGCAAAAAATTAA-ACTTAATATATGCTACTTGTGACAAGTAATGCAAAAG

a score=35249
s chr3           156518498 1197 + 160039680 ACATGGCAGTTGCTTTAAGAATTTTTTTTGACATATTTTATGTTTGATAGACTCACAGACAGCCTATTCTGTTTATGGAGAAATTTCATTCTCAGAAATTACACTTTACTTTTCCTATATGAGAACTGACTTCAGTAGTTAGATAAATAGCTTCCAT---ATTCCTAATTTCTATCGGGGAAATTAAAGTCAAAAGAATATCAAATGAAATAAGTATGAAAAAATTTTCTTAAGGGCTTTCTTTACCCTCTTCATTTTTATAATACTGACACTCATAATGGATAAGTTGGCTATTCTATGTAGAATTCTGTTGTTTCATTTCTGCTGACTTCTAAACAAAACACTGTAACCAAAAGGATAAA-TAACAGGCTGACCTGGCTACTTGTTCCCAACATATTATTAAGCTGCAATATATTTCCTCTGAGAAACAAATTCCCCACTATTTCTTTTGatatatatatatatatatgtatatatatatatGAATTTCACTTCAGCCATGG----------CGGAAATATAACTTGACAAAGCTGGGCTCAGCTAATGAGAGGTGAGGGAGCTTAGAGCTTTTCCCAGGAATGAGGGTTTTCATTACAGC-TTTTGGGAGGCAAGAAGCATTGAAGAGAGGGATTAAATAGCAGGGGAAAGAGAGGGCATGATTAGATTTCGCCTTTGAAGAGATATATTAGAAAATACGCTGTCAGAGTCTGACAGTTACCTTCAG--CTTTCTC---GGTTACA-GCAATATTGTTCTCCAAAATAAGACTGTTTGGGGAAGCA---TTTTTCACTTTGGGCTTTTCAGTTTGAGCAAAATAATGGAGCAAGTTGTTGGCATTATTTGTTAGCAAAAAT--GAGACATGAATGTGATATTTTTATTAGAATGGTCATTCTCATATTTTGCTACTGTGATGTCAGATCCTGTCTCTCTAAATGTGATACTTTATATT-ACTGGAGGCAGCAAAGAAGTGTGCACACATCACTCTTACTATCACTAGTAGTGTGATCTCTGAGCAGCATCACTCTGTGAGTAGGAAA-ATCGGCATACATCTACAATGCTAACTTTCAACACTGGATGAAGTCTT-----GTTACCTGTTGCCAAGGA--TTAAATTGGAAGCTTTAACTAGCTGAATTTTTCTGCATGTATTAAAACTACTCATTAATAATAGAAAAAATTTTACCA-TATAAAAGCAAGCTTAACAAAGATAACTAAA
s HiC_scaffold_1 143667897 1197 + 233722169 ACCTACCAgatgttttaaatttcccttttggCA-ACTTTCCTTTCAGCTGACTCATAGGGA-CCCATTCTATTTTTGGAGAGGTTTAATATT---AGACAGTGTTTAAATCATCCCATGCAAATACTGGGTTCAATACTTTTCAAACTAGTTCCCATTATAACCCTAAACTCTAGCTGATGTGTTTCAACTGATTGCAAATCCGACGGGA-AAATGTGAAAGGGTGTCCTTCGGTGCTTTCTTTACC-----------------ACAGAAAGCAGCAAGTGATCAGTAAGTTATTCCATCCAGAATGCCATTGTTTTATTCCTGTTGACTTCTCCATAAAGCACTGTCCACAAAAGGGTACCTTAGCAGGCTGAGCTGGTCACTTGCTCcctatatattattaaaatgccTTATATTTCCTCTGGGATAAAATTACTGTGTTACTTCCTTTAA-------ATGATTTTATACCAAAAGACGTCTGAATTTCACTTGAGCCACAGGCGAGGTCTCGggaaataaaacctaacaaagcTGGGTCCCACTAATGAGAGGTGAGGGAG-TTCGGGCTTTGCCGTGAACTCTGGG-TTTCATTACAGCAGTTGGGGAAATGGGATGTAACAAGAAGAAGGATTGAATGGCACAGGAGAGGGTGAACATGATGAGATTTCACTTTTGAagagatattttagaaaatatgctGTCAAAACCTCACAGTTACCTTCAggattttttctaaatttataggCAATATTGTTTTTCCAAATAAGACTATTTTCgaaagtaatttttttcactttgtgtttTTCAATTTGAGCCAAATAACTGAGCTTGTACTTGACAttatttattaatagaaatgagagaTATGGATGTGATACTTGCCTCCGATTGCTTATTCTCATATTCTGCC-TTATGATGTCACATTTTACCTGTCTACATCTGATGCTGCTGATTAACTGAAGGCCAT-GAGAAACTTGCATGTGTCAAACTGCCTGCAGCCAGCGAATGCTTTTCTGGGAGGCATAATATTATAAACAGGAAACACAGGCCCCTGTCTATAAGGTAATCTATGGACAACTAATAAAGTATTCAAACTTCACCTGCAGCATGAGAAGTTGAAAGGAAAGCCCTTACTAGTAGACAGTCTCTGCATGTAGTAAGAATAATGATTAATAGT--CATAGTTTTCTCTATTATAAAAGGAAGGTTAGCAAAAATGAATAAA

a score=15241
s chr3           156524066 482 + 160039680 CAGAGCAAGAATGTTTCTGAG----CACAGAGGACAACTGCTCTTTTTACAGCAACAA----AACTATCTG-CATGTTTGATGTGCTCACAAGTTTGCTTCAAAGGGAACATA----AACAGACAATAATGTAAATTCCCATTAATCTATTTGATATTCATAACATGGCTGTTGTTCttttaaaaaattaaaataataaaaCAATGTTACCAGAATATACCTCCTCATACAAATTGATGGTGCTGGTTTAGAGCAAGTGTTTCCTAAAGTATTTACAGATTTATTTGTCAGTTATACATGAAACTAACTAATAAAATTTTGGTCGACATT---GTTGTTAGGAGTTTAACTGCATCACTGTAATTGAAACATAACAAAATGTGAACATGTCATAATGAATAAATTTTAGAAGC--TGAATTGTCACAGAACCCATCACTAAGTTCTATGATAAACCTTCaagtggagattatgacaaaccattttttaaagaggtagctt
s HiC_scaffold_1 143683605 477 + 233722169 CAAGGCTAGAGTGGTCCCAAAATTACACAGAG---------TTTTTTCACAGTGACAACTAGAGCCTTTTGACTTTTCTTATGTGTTCACAATTTTGCATCAGAAGCAGCAAATGCTATCAGAATGTAATAtgagttc---tttatttattttgtatgtagAGCAtagttttcattcttt--aaaaattaaaataataaaacagtattaCCAAAAATTATCTCCTCATGCAAGTTAAAGATACTGATTTAAAGTAAGCATTTTCTAAAGTACTTACAGGTTTATTTAT--GTTATACATAAA------CAATGAAAGTTGTGTTGCTATTATCATTATTGGTAGCTTAATTGATGTCATGTACATGAAAAATGACCACGTGTTGGCCCAcaacaataaacacattttaaaaactttaaatacatATAGCACCTATGATTAAGTTGTATAACAAAGCTTCAAATAAAGgatttaacaaaac-tttttttaagaAGTGGCTT

a score=35663
s chr3           156525740 1774 + 160039680 TATTTTATCCTTATTATCATAGACC---CAGTAATCATCACAGGAGATATTATTCAGCCAAAATATTTGCAGAGATTTTTATTGCATCTAATCAAAAGATAAAGTTGTAAGGAAAGGTCCATAAATATTATTTACAATGATTAAATCATGATCACAGGCATAAGACACTCATT-ACATAATTTGGAAGCATGCTAACTGTATGTATTTGCATGTCACTTGCTGGGAGGAAAGATTGACAGAAAGACATATAATCATAAAAATTTATCTAATGTGGCATGCAAATCAGT--GAACATTTCAAAAGGA--ACAAAATTTTCTAACATCAGTAGAATCATTTTTGTACC------TGTTTTGTGAAGGCAAAGACA----GAAAGTggtagggagtga---gaatgatggg---------agaggagagagtggagggaag--------------------gaaagtggacatgaagaaagggggaagataggaacaggagagaaggacaaagagagacat---gaagaaaacatgggaaaagatgagggagagaggagggaaggatgggtggaggaaggatggaggaaaagaggTTT--CCAATTCCAAATT---------GTCTTTTTACATAT-------------------------------AAAATGA--TCTTGGGCAA-AGGTGTCTAAGCCCATTAAAGCTGTTT-------------------ACTTGTCTGGATGTTG----GAATACAAATAGCACTTTTATAAATATCAGATGCTGCAGTATTTGT---GCCTTA-----AAATTTTATTTTTTGAATGCAATCATTTAATGTATTAAATCA----TGACCGACTGTGGCCAATTTATTCAGGCCAAGTTTGCCATCTGTGTTTCTCTTCACGCAATTCTAAACAAGGGCTGCTGAGCCCG-TAGAGGAAAGCTCGTTAAAGGCACAGCATTA---ATAAAATGCTGCATACGGAAACCAAGTCTTTAATAACGTTTT-TAGCCTTCTCAT--CCCACCTTAGAGAATCCCTTTTTAATTTTCCCTTGGTCACCACGGAAATCACAAA-TCTTTAAGATGCCCTGCCTGGGGGCTTCATCCCAGTGACATCTCCCTGGCAATGGTGACAGATTCTGTTCATTGGTTGTTAGATGAGTGTCTCTGCTTTGTTGACCAGGAAGCCAGAAAACACATAGCAATTAAAAAGATGTACAGTCTAATATATTCCAATTAGAGAGGGTCGCCCACATCCACCAGTGGGTATTCACAAATCACCAACTAACCCTTTCAGATCTAGGACTG-TCTTGTGTAGTTACTTTTGCTTCTGAAGACCAT---AGTGAAAAAGGAGATTACAGGGACACAAAGGGCTGGCTTTCATTTAGCTTTCTTTGCTTTTTTTCTTAATATCTTGGCTATTTTCATATTAAAATTATAATGCTCATTAAAGC-ATAATTTGAAGTGGTCTCTTCGAGGTTGGGAAGTATTTTTATTTTACAGATGGCAAAGCAATGGATGAAATTATATCTATCAACTAAATGTTATTAGAATAAAGTTGGCAATAAGGAAATAAA-----TAAATAAAATGATATTTTAAGCACACTTTTTTCTAGAAAAGGGAAGGGGATAAGGAGCAGATATGGCTGAGACATATTGTATACATATATAAAATTTCAAGGaataaattaaaaatgattttaaaaatcaaaaataaaaGGTCCATTAAAATGGTGCAGTGACTTGAAATCACATGTTCTTCTGTGAAGTGGAAGCAAGGACCAGTGCCAATGGCAA-CATGAAGCTGGCAGAGCCAGCACACAACATGAAGATATCTTCCTGACAGATTTAAGTTGATGCAGCCAAATCAGAATCTTTGTTCTTTTGCTTCAATCAAATATTTT
s HiC_scaffold_1 143686001 1746 + 233722169 TATTATACCTTTGCTATCCCAGCTCTCTCAGT--TTATTGTAGTCAACGTTATTTGGCAAAAGTATTTGCAAGGATTACTACTACATCTAATCAAGAgacaaaacacaaaggaaatggctAGAAGCATTATTTATAATCATTCAGTCATGATCA-------GATATACTTatttgtaagacttcaaagcatgCAAATTGTGTATATTTGTATGTTTCTTA-----AGGAAA--CTGATACAAAGACAGATAATCATGGAAACTTATCTAATGCAACATGTAGGTCACTCTGAACAATTTAGAGAGAGAACAAATTTTTATGACATCAGTGAAA--ATTCAGGAGCCCTACTCTGTTTCTTGGAGG--ATGACCTTGTGCAAGTGATTAGGCctttcctgaattattttttcatctttaaattagaATATGAACAATACTTCTATTTAACTGGctcctcaaatatttttattacaaaat--------tgtGCCCTGCAGAAAAG----AGGACACTCATTCTGGGTATTACATAGTAAA-TCTCATGGTGACCACTAGGAAGGCTGA-------CAAACTGTCAGCCCCTTGCTTTGCCCACTTACAAATTTCTcccctggtccttatttttatgGTACTATGTTTTGGTCTTATTATTTTGCCAACAGTGAATTCCTGAACAGTGGGTGCCTACTTATGTCAGGCTTCTTTTCACAAACATAATAGCAAAACCCATTTTGTTGCAGAAACGAGTGTTAACAATACTTGTATATGTGTTCAATATTGCAGTACGTATCTAGCATTAGGACTAAAGCTTTGTGTTTAcaagcaattattt------ttaaattgaaactaACTGACTGTGGCCAATTTG----GGCCACTTCTCTCATCTGTGTTGCTCTTCATGAAGCTCATAACAAGGTAAAAGAAACCCGGTAGAAGAAAACTCATTAAATGTACagtattattaataaaataatgcata---GAAAGGAGTATTTAATAGCATTTTATAGCCTTCTAATAGCCCACCTTAGagaatcactttttaattttcccttgGCCACCATGGAAATCACAAAATCCTTATGATGTTCTGTCCAGGGATTTAGTCCCAATGATGTGGCCCTGGCAATGGTAATGCATCATATGCTGTAGGTGTGAGATCAGTGTCTCCTCTTTGTTGACCAGGAAGCTAGAAAACACATAGCAATTAAAAAGATGTACAGCCTAATATATTCTAATTAGAGATGATTACCCACATCCTCCAATGGGTATTCACAAATTACCTACTAACCCTTTTAAAAATAGGACTGATTTTGTATTGTTGCCATTGATTTTGAAAGCTgtgcaaaagaaaacaaggatTGTGCAGACACAGaag---tgttttcttttg----tgtttgcattttttt----aaacttggttactttcctcttaaaatcataatattctttaaaatgaaaatctgaaacagtctgatcttatttggaaaata-atttatttcacagACGGTAGA-TGATggttggag----------aaaatatttactgttaaagaaaaataaataataagaagcCAACATTTTCAGGCAAAGTGACCTT----GTACTATCTATCCTTAAAAAAGG---------------CTTTGTGGCTCACA---------------------------------AAACTAATCATGTTTTTTGCAACTAAGAA----------ATTAGAATAGAGc--------------------------------ccaaagagaaaaatagtgATAGAAGCAAGTGTGAGGCTGGAA----CATCAC----TATTAATACATTTTCTTGACAATTTTAACTTGATGTGGTCAAACAGAAATGCTTGTTCTCTT--TTCCACTGGGcatttt

a score=13998
s chr3           156537778 809 + 160039680 AGAGGCATCAACTGTTGAAATTTTCAAGGCCCAAACAGACATTTTTCTAGGGATCATCTGACTCAGAGTTAGAACTATGATTATTTAGATGTAAAATGAGGAAGGTCTTCTTTCTGGGTTCATTTTGAGCATATGCTGTTTCCTTGATTGCAGTTCAAATACACTTAAGCTTCACACAGATTTATAAAGCAACTAACATCTTTATGTCGAGCACAGATTTCACCCTTCATTATTTTTATATGTTTACCAGATGAATTTTTGTC--------------TTAGAAAGTGTCACACAGTAACTATGGGATACGCTCTTCACT-GCACATCTATAAATTAATATTTCATGCTTTGATTAGGAAGGGTCAAGCTTCTATTTCTCTGCTACCTTTTTCAGGTAAATCTGTTGGAGTGACATTTATGAAAACTTGAAGAGCCTTTGTCTTGATGGTTAAATCTTACAAATTTTGAGAAAAATTAAATCCCCCAAGCTGAAACCAACTGGAGGCAGAAGCT----TCTCAGGTCTTCTTGCTTCCTCCCCAGCAACATTGGTA---TAACGTCTGTGATAGATGGATAATCAAGG----------------------------------------CCTCTAAAAAACCCTGCCTCGGTTTCTCTAAGGTTT--AGACTTTGTTCAGCTTCCTTTCCTTTCCTTGGCTTTACTGGGTTATCCTCCAGTATTTCCTTCTTATTGAAGGGAAAGGCAGTTGCCATTCCAACAGAGAGACTGGATATCATGGTTTCTTGTA--CCTCTAAAAATAGTTTCAC------TTCTTTATCCATCCCTTAATTT---------TGTTAAGATTCTTTAGAAC--TAGTGATTTTGCTCTTATCAAATG
s HiC_scaffold_1 143691091 841 + 233722169 AAAGGTAT-aactataaaaaaatttaaggc---aaTAAAT-TTTTTCTAAGGATCATCAAACTCAGATTTAGGAAGAGAAGTAC-----------------AAGATCTTATTTTAGTGCTTATTTTGAAAGTACATTGCTTCCTTGATTAAAGTTCAAATATATTTACACTTTGCCTAGATTTATGAAGACACTTACCCCTTCATGCTATGTGAAAGATTTTCCCCTCATTACTTTTACATGCCTACTAGAtggatttttgtcattaaaattttGCTCTAGAAATTCTCATACTGTCATTAGGAGATACTTTCTTCACTGGAACACTGATAAATTAATGCTACACATATTGTAGAATAAAGAGCATGTTTCT-CGTATGTGCTCCC---------CACATCCTTTG--CTCCCCCTTGCAAAGACCAGACAGGCCTGTGTGTTG-TGGTCAAGACTTAGCAATGCAGCGAGAAATTAAATCTCACAAGGTGAAACCCAT-----GCAAATGCTGGACTCAGAGCTCTCCTTGTACGTCGCTCTGCAATTTGAATATATTAATGTGTCATGTAGAAGATTCACTAAGGATTTATGATGCCTGTGCTATGGGCGTCTCAAGTGTGTGCATCTCCGGGCAACTCAGACTCAGTTTCTCTAATATTGAAAGATCATAGCCAGCCTCATCTCCCTTCTACCACCCTTGTCGCGTAATCTCCAGGGCGGTGGCTTCACTGAGGGAAATGGTAACTGTGAG---AAGAGTGAG--------CTGTGATTTCCTGCAGCCCTCCTGAACTTCTCTCCCCTTTGTTCCTTCATTCCTACTTCCATTTCCCCTTGTCTATCAAACTCACCCAGAGCTGTGGCTCTTTTGTTCCTAACAAATG

a score=30541
s chr3           156538588 1162 + 160039680 TCAGAGCTCTGTACTGAATGTGGTTAAGCCAATTAAAGGAATTCTATAA----------CCTGACCAGCACCTTACTCAGCTGTGTGGTTGTTCATGGTGTGCTCCATCTC--CCTGGTTCACCCTCTGTGTGGTAGCAGATGTGAGTTCATTGGCATGCTCAAAAATAACCAACAGGTCACTTCTAAGGATCAACATTATATTGGAA-GCAAACAGGGCCAGACACAAGCCTTTCTATG-----------TTC------------AATGTAAG-TGGCCTTCATGAAACACACTGG-------AGCTAATACAGTCTCTGTTTCATACATTTTGAAAGCAAACAAGAGAGCAGTGAC---CCTGGCTCTAGACTGACAGCTGAAACAGAGGTCATCCACATTGTGTTCTGTTTTCCAAAACTTCATTTATTTTGATATTTGCATTTGCTGGGTTAGAGTGGAATACTTCTTGCTAAATTAGGAGCTGACAATCTAATTACTGGTGATTGATAGGCCTTGTTTGTCGGAGTCAAGGCTGGAACATGAAGCGCTCACCTTTACTCTGATTTGCATTTGTCATAATCAAAATAACACATATAGAATAGAGGTAAATTAGTATCATTGGATTCAGTAAT----AGTGGAAAAATCCTAAAACAGGCAAATTCTGTAAAGTAATCACT-AAACCACCTCATTCTTCATTGCAGGGTTGGGCCCCATAGGCTACATGGTTCATTTGAAATTGCTATGCAGATCTAAATATGACATATCCTGCTTTAATGAGCAACCCTTTAAAAAACAATCATTG-TGCATCTGTACTTAATTTTCAGTGTAAAAACCA--CGGAAAGTG-TCCATTCTTCATCTTGTCTGAATTGTACAACATGGTCTGTGCAG--ATACAGTATTCTAGACTTCAGTACTTTTAAGTATCTGTATACCTGCAAACACCCTTCACAAAAGCTGCCATTTTCAGGATTAATCTGCCTTTCCTATCAGAAGCTCAGGTGGACAGAAATGGTATTGCCATGGGAATTGG--TGCACTTGTTGGTATTGTCTCTGTG----TCACTAAGCAGGCAAACATACCAGTGATCCATAGGTATGAGGTT--CAAATCTACTAC-TAAAATGTCCATAATCGTTCAACT--------GTACTTACAGATCCCACTGTAAGGGTTAAATAAAATAGGGGTATTTAGAGGTCACCTATA---ATATCTTTTGTGC
s HiC_scaffold_1 143692384 1220 + 233722169 TCCAAGATCCTCACTGAATATAAGTAAGCCAATGAAAGTTATCCCATAAATCTGTGTAGTCTGAAAAGCACCATATCAAGTtttatacatgtacatg-tacatttCATTTTTGCTTACTTCATG-TCTGTGTGCTGGAAGGC---AGTCCAAGGACATGACCAAGATTAACTATAAATTTTCCTGCAAGAACCAACTTTATATTTGTATGAAGGGAGGGCT---CATAAACCTTTGTATGCAAGTATACAATTCTAGTCTAGAGGTAGTGTAAAATGGTTTGCTTAAAGCATGTTGGCTCTTGTAGCTCATAAAATATCTACCTGTTACACTTAGaacataaatatgaaaagaattacACACCAAACTTCAGAGTGCCA-CAGAAACTGAGAGCATTtgcattgtgttttgttttgcaaaacttcatttattttgatatttacatGTGC-GGGT----GTGGAACACTTCTTGCTAAATTAGGAACTGACAGCTTAATTATATATGATTGATATGCTTTCTTTGGAGGAGTCACTACTGGAATATAAACTTCT-ACCTTTCTCCTTATTTATGTTTATCATACTTGAAATAACAAATACAGATTGGAGATATTGCAGTTTTCATGGATTTGGTGTTGCTCACTGGAAAAATCCTAACATAGGCAAATTCGATTTAGCAAGTATTTAAATCATCCTGTTTTGCATTATAAGGTTAGTCCCCATATGGTATATTATTCTTCTAAAATTTCTATGCAGATCTAAATATGACAAATGCTATTTTAATGAGAAATCCTTTACAACATATTCATTGTTGTGTCTCTTTTTAATACTCAATGTAAGCAGCAGGGGGAAACTGCTCCTGTCTCCATCCTAGATGAATCACACAATATTGTCTGAAAAGACATGCAGTGTTTTAAACAACTCTGCTTTTAAATATCGGGACAGTCTTAAATGCTTCCTA-AAATGCCACTATTTCCA-TATCATAATGCCTTTCCTTTTCATAGC-AAGTCTAATGAGAATAACATTGCTTTTGGAATCAGACTGACCTGGTTTGAATCTTCACTTTGTTAATCACTAGCTAGGTAAACTTGCCAATACCATTTAACTATGAGCTTGACATACTTTCTGTGTGAAATATTAGTAACTGTtccattaatataaaatatttagagtt--TATCGTGTTGCTTAGAACAAATAATGGGGAGTATAAATTATCTGTAAGCATGTCctttatac

a score=29352
s chr3           156547536 3796 + 160039680 ccaagccacactggtgatcaccagctcacctatgttggcaagggtagatctccttactcacctca---ctgactcagatgttagcctttcctcaagcaacctgaagaactcactcagaatccagctgtcagggtaacc---ttcaggatagtcaagtCAATGAATACATCACAACAACTAATTACTGACAGAATCTTGAGTTGTTTGACCCTCTGT------TAATTTACTGTTGCTTTCATAGGAGAGTCAGTTGCTAAAATACA-TATTCCAATGATACAGTTGATTCCGGCTCATGCTGTC----CTGTCCTTTTACAGAAAAAAAAA-----ATTATTATACACCTAGGATAATCTTTACATTCTTCTTTCAT-TAAAACA---ACCATTTAACCAGCTATCTTCTTCTAGATAAGAAGATAAATTTCAAAATGACATATTCTCATGTATAAGTCAAACTATGAACTCTATTCCTGGTTTTAAAAATGCTTATGCTTACAAGAAATCAAT--------------TCAGTGTCTTGTTTTTATGACTCTAATTTCACTAAACATCTCCAGGATAAATG--GGCTGTTTCTAAAACAACTTTTTTTGTTGTTGTTTATTTAAACTACAAGCGTTGCTAATTTATAAAAGATAGATATCCTTATTTCAGACTCTACTTCTGTTCATT-----AGTAAAATAATTAGTTTAATTTTGAAAAGACAGCTAGGCAATGAAGTGTACGTAGAAATGAATACATTAGCTAGAAGAATATTGCT--CTCTAAAGTATAT--TATTTCTTTCT-GCTTACTTTATTATTGGTTGTACTGTTAACTTATCTACAATTATTGGCTAATATCATCTCTTAATTTTACATTATGAATATGATCATTGTTAATTCCATTAATGACAAGAAACAACAGATATCGTGTGTAAAACATTCAGCATGTTCATTTATTGTCAGGTGTGTGCTAAAACTTTTCATTCTTGCAAAACATATTTGTCATTTAACAGCTGGAAAAACTGTTTCAAAGACTATTAGTGTGACTGATAAGGAAAAATT-------ACAATTTTATCCTACAATCTAAAGTGTGTTACAAAGTGTTACTTCTACAACTTCATAGTAAAACTGTGTCTATATTTAGATAATTATTCTACCTTATTACTGAAAATAAGTAAGAAATATACCACATATCTACTTATGATCTACATTAAACTTTTATATATATATATACCCAAAAAGAAAAAATAAGAAATCTAGCATCCATTTATGA---TATAAATTAAACTTTCATGTACAACTGtaaattataaatatatataacatatataCATGGTTTATGATTGAACTATAATGGAAAAAGCAAGAGCATT-TGCTCCTAAAGTTAGTCTTGCCGTTGTGATAGATGTAGCACTGAAAACATGCCATTTTGGGTTTTACTTAAGTAAttttttaagattcatttatttttatgtgcattggtatttctgctgcatttaggcctgtgtgaggatgccaattcccttagaactggaattacagactgagctgccatctgggtgctgggaattgaacctggatcttccgggaggtcagccagtgctcttcaccagtgagtcatatccagtgccTAGCCATTTAGGTTTTAATAGAAAATGTAATTTACTTTTTGGAAACAGTATTTTGACTTAAAATGTCTTAGATTAATTGCATAGAATAAAATAA---TATTGATTTGGGAAAA----ATATTTCAAGGAATTTTTTTTCAAAAAATATATACCTAGTAGTTCCTTCTTGTCCAACCGTAGTATGTGAAATCATGTATAAACACTGTAGTGGAAATAGACAGATTAGAATCCAACTTACTGAATCAAGCTGAGGTCAGCAGTCTTTGTAAGGCATCACTGCAAATGCTAGTCAGCAAGCTGAGAGCAGAATGCAAGTACCATTGCTTGGTTCT-AACAGGGAGG--TCCTGCTACCAATCCCACTTAGCATCTCTGCTACCTACCACTTCACAGCTCACAGCATGGGATCATGTGCTCACTACATCAAAA--------CAGGGTGGAACCATCTTTAAATGA-------------------ATGGCAATACTGTTGGCTCCTTAGCCCCATGTACAGAGACAACACAAGTGTTGATACAAGGTACATTCCTGTAGGCAAATGTTCTGCC-CACTTTTACTT------ATAGAAATACACCCCACTTTTGCAAATTGAAGCAAAATTATAGAGAGGGGATAGTATAGATATTGAAATGTAGAATAGAAGTTTTAAAATGACTTTAAATCTGAACACATGAGTAGTTAGTAATCTCCTTGAAATTATAATATGTAAAGCACAATGT---ATAGACATAAAGTATAGACAAGTTTCATCCTGAGTGATTCCCCTTTCATtgttgtgagatgtctaccagagaaggctacaagtttaagagaagaagagccaagagaaggccatagcaggctggagggtagaaaatactctgcatgttcaggatcccagtggagctgtgagtctttctcagggtgaggttttaaacacaaaatttatatcgtgagttgacatacgtccatttacaagaactgttagctgaaagtgaaaatacagaagccaaatgcaaagttagtaaatgtagaaactttctcagaactatggactttgacagattagatctttgttttaagtttggcaggtggtgttatatatgtgctgggttttatagaatgaatggtacttctgtcaaggagtcagttttgttaaagtctgagagcatgttacaACATGAGAAAAATCCCACTGCCCTAAGCTATCAGCCCCCATATGTTTTTAATCTTACCTGTTTTCACAGTGATGATCAAATGAACATTAGTGTAAACTAGAGTGTT--GTTTATCCTCTCTGATTATTTAGAATTAGTATCTGGATTTTAA-TGGGTGGCTTTGAAAGTTTTATTAATTGCAAAATACAAAAGAAAAATTTATATACCTTTAGATCACCATACCTCA--GGAGAAGTGGAGAAAGTTATTTGACAAAATCAATACCAGAAGAGAAAGCAGA-GAGTAGCTGCTGACCATGTACCATATTCCAATTGAGTGTCTCTGGTTGAGGCTTGGCTTTATTCCTACACTTGAGTTCTGCAATAT-CCTCAATATATAATTAACAAAGTCGTCA-GGATTTATTCTGCCTTGGAAAGCCTCAGTTATAGATAAAGGGGCATAAAATATGTATTGTTTTAAAAGGGTTTTGTGTGAGAGCATAGTGTTCTGATCCTGTGGAGCCATTATCAAGGCTCTGGGGTAGACCTTGCTCTGGTTTTGAGGTAGTACATTA--CCCAGCCCACTAGGCTGTGCCTGGAAAGCCACTGCTGTAGTCTTGCAGAATGCATTATATCTCCT--GCTTTCTCTAGAGAGAAAATGAGATG------TACTATTAAAAATAATGCCTGCTCT-TAATATAAGATATTGAAACACACTAACCCACTGGCAG-AACAAGCAGG-ACTTAGAGAATTAGGCCATGT-ATAACTCTCACCCCGTGTAATTTCCTGCTCTT-TGCTTTCTGACA--TTGTCCTTACTTATTTCCTGCACTGTAGTCAGATGTTGCAGGATCCAAGCAAGAGACATGAATCAATCCAAGCTGTGCAGTCCCCCTCTTATCAGAATGGACAGGGAACACCTTTCACAGTGAGGCGGTCTCAGCATCTCACACTAGAAGTTCTGTTCCTTTCTTCGGGCTCCTGAATGAGTTAGTTCTTCTATTACTT--GTAACTTTTTCTTCCTTTAAGCAA-AAGGCAAGGGAGTCAATATAAGAAAAGAGTTCAATAAAATACC----TCAACATAGATGGAGTGGTGCTCAATACACAGTAAATACATA
s HiC_scaffold_1 143705285 3198 + 233722169 CTAATTCATCTTGATGA-----AGATCACCCACATGGATAAAAGTGGAT----TCACTCCGCTCAGTAATAATTCAAAGTTTAACCTCTCTGGAGACACACTCAAAATCACACCTAGAATTAATGTTTTAAT-TAACCCCTTTCAGGTGA--CAGGTAAAAATAACCATCACAAC-------------------CTACACTGGTTTATCTCACTGTATGTGTCAATTTA---TTACTTTGGTAAAATAATCATTTGGTGAAATTCAATTTGGTAGTGTTGTTGTTATTCCCAGTTTGCCTCATTATAGCTGTTCTTTTGAAGAAAAACCATTTTCTATCATTCTGCCTCTAGA-------TAAGATGCGAATCTTATGTGAAACATAAGGTTTTTAAGTAATTGTC---------ATAAGCA--TCAATTTTACAATGATAT-----TAACTATAAGTCAAAATATCAGGTTT-------TATTTAGAAAT--------CTCTAAGAAAATAACCACATATTTACCCCTTATAGTTTCACTCTTTCTATGTTAGTTTTACTAACCATCATCAGGATAAATGAAGTCTGTGGC-GAAGTAACTT--------ATTGTGTATTCAAGCTGTAAGCATT-CTTATTAACAGAAGATAAATGTCCTTTGCTCTCATTCTAGTCATATTCATTGCATTAGTAAAATAATTAGATTAATTTTGGGGAGACAGGTAAGCAATGAAGTGCActtagaaat-aatatatttactgaaatagTATCACTGTCTCTAAAATATGTGTCATCTATTTCTTGTTTAGATAATTATTGGCAGCATTCTTCATTTATAGTCATTTTCTAGTTAATACTATCT-TTCACTTTATATTATCATTATAATCAT----------------------------------------GCAAAATATACAGGGTCTTTGTTT-TTGCCAGTGATGTGTTACAAACCTtaactttt----catctttttatgaTTTTACAATTGGAAAAATTGCTGCAAAGAACACTGATGTGATCTGAATGAAGAAATTGAGTAAGATACTCTAGTGGTCTCATTCAAAGC------CTAAGTGTAGCCTTT-----------GTATAGTTGTAACCTTGTT---ACAACTATTATACTAT-TGACTAAAactgattaaaatatttaatacatgt----------------------------gtgtatgcat---caaaactaaaaaataataatttta---------tataaaattataagccaaatttt-atgttttcctaagAAT-Atggatatttataa-----------attttaaaattgtat----------aaactAAGAACATAATTCTCATAAAATTAATTGTAC------------TATACTATTGAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTACCAGTTAGCC-------------------------TTTAAAAGAAAGC----TTTAACTTTTGGTAGCAGTATTTTTATTCAAGCT-TCATAGAATCATTACATAAGAAAGCAAAAGTTTATTGATTCAAAAGTATCTAGCATTTCCAGGAAtttttccccaaaacaaa-acattttgaatGTAATTCTTCTCTGGCAGCACTATTTGTATCCATACCCATGTACCCTCATGGAAATGGATACATCAGAAATCAACAGATGGAATCAATCCAGGGTCAGTAAACCTTGCAAGTCATCACCACAGCTGCCAGTGAGGGAACTACATTCAAAGCGTGGATGTCATTGTGTGGTTCTTAACAGAGAGGCATCTAGACGTGACTCATTTTTAGAGCCTCTGC---------CTTCACCTTGCAAATCA----AACATGTGCTAACCATGACAAAAGGCAAAGGCAAGGTGGGTCTAGCATGGAATGGCACTCTGTGCAGGATTATTAAAGCGCTATCATTGGCTAATCTGCCCCCT--ACCAGGACAGC-CAAGTGATTGTGCACAATGTAACCTTGTGGATGGGCACTCTGCCTCATTTTTCCCTTGTCCAGCACAAATTCCTCTTACTTCAG-----TGAAGCAA----------------------------------------------------------------TCTATCTTCATGTGCAGAAAATGATCTCACTgc--------tatttaaagcaaaatatcccattcttgcaaaatgaaagaaaat---------gattacTACACTAGCAGCATTTGTACACAtgcattca-------tacacacacacacacacacacacacacacacacacaca-cacactgga--------aatAATTGGC----------------TAGGGCTAGAAGCAATTTTGtatctaaagttttaaaaat--------cattttaactcAAC---------TTTTCATGATGAATTATCTGAAATT----ACATAGAAGATGAgtatatggt--------gtccaaacttT---------------------AGAT---ACACTTTTTCCCACCCAAGCAGGC-------------TTCTCACTTTCATGGA--GAAC--TACCCCTG--AAAGAATGGGcatta--aatgttt-------tgtt----------------tgtattatcgTGGGCT-----------CATGGTTACAAT-TAACTTATT---------ATGGCTAAAT---TTTTTGCCTCAGTTGGGCTGCACAGATTCTCTTTctgaataatttgaaattattgCTCAGACTCTGAGTGAATGGCT---AAAAGTTTCCTCACTCTGAAACACATCCTGGGCATTTATGCATTTTTAGATAGCCATATTTCACTAGGGAAATG-AGAAAGTTCTTCCACAGCATTGATATCAGAAGA-----CAGATAAATAATTCCTGACCACTTTCTATATTCTAACTGAGTGTCTTTGGTGGAGCCTTGGCTTCCTTTCTATGCTTGAGCTCCTCACGATATCTGAATATATAATTAACAAAGTCATCATGTCCTTAAGCTGCCTCAGATTGTTTCAGTTATACACAAAGGTTCATAAAAGATGCATCATTTTAAAAGAG-TACGTGTGATAGGCCATTGTCTCCAGTCCAT-AAACTGTCTTACAGTCCC--GCACTGACATGAGTTTGGCTTTGGAATATTACTTTAGTCCCAGTTCACT-GGCAGTACCTGGAAGACAGCCTTCTTAGCCTTGTAGCATACAATAAATCTCTCAGGTCCCCCCCATAGAAAAAATAAGATGAGGCATTAATAGTAAAAGGAGTATATCCTCTccaatataatatattaaaa---ataaatttactggAGGAAACACATAAGTACTTTTGGAATTGCACCACATCGAAATTTTCACCATGTATAG-TTCCTGCTTTTGGGTTTTCCAGCAACCAGTTCCAGGTGACCTCTCATCCTTGAGACAGAAGCCTTAGAATTAGAGCAAAA---CTCAGTGACTCCAAGGTATTCAA----------GTCAGCATG---------------TCAGAGTGACACAGAATGGACCACGGGCTTTCGTAGTTCTAGCTTCAAATCCCAAACCCTGCGTAGACAAGTGACTTTATCACTCTGATTACATTTACCTCCTCTAAGAAACAGGGAAAATGGCTCAATACATGGAATAAGCTAAATGAGACGTCACTTGCTATGTAACTTGAGTGGCGCCTGATATATAGGAAGTGCACA

a score=85981
s chr3           156558410 8303 + 160039680 [encoded data, 9672 characters]
s HiC_scaffold_1 143729376 8739 + 233722169 [encoded data, 9672 characters]

a score=18027
s chr3           156573255 607 + 160039680 TTATTTGTTTTTTTGACTCAACTCATAGAACCTTCTCTTCCTTCCCCACAAGGCAACAATGAAATGAAATTAGTGGACACAGCAGAAACACAGAAAATTGACCATTGCAATTGATGACCAGTTCTCAGTTGTGAAAAGCATCTATGCACCACTCCTCAAAGACCAGTA------TTTGTACTACCCTAGCTGTCTCTTAGAGGTAGGGTCATAGCTCTTTGTAAACCACAGGC-AGTGATAGGAGGTGATAGAGCTTTCGTGTGGTCAC-AGGCTTTGATT-ATGATGCCAAGG-GGTTATCTATCAGCATTGTGCCTTCCAATCCACATCAAGTTCTGCATCCTGACAGAGAACCTTTGATGTTCTCCAGCATCCAGCTGGCAAGGGAATTGGTCT--TAATCACTTTCTCTGA---AAGCCGGAGAGAGGGAAGAAGGGGCTTGGCAGTGTTGGTAACATTAAGTGTTGTGCTTTTGAAAGGATGCCAGCACATTGTACTTTCCAAATAGCTAGTAAATTTGCTCAATTTAAGGGAGATTTTTTTTAACCCTACTCAGTCCAGAACTAAATTGTTCTTTGTGGAATTTCACTGATTCTTCAAATGTATGTCCAGTTCTCA
s HiC_scaffold_1 143741147 610 + 233722169 tttttcctgtttttaactcAAACTGTGGAacatgttctttctttctcctaaGACATCAATTAT-TGAAATCCATAAAAGTAACAGAGATAGAGAGAACTTTCTATTGCTACAGACCAATAAGTCTAAATTGTGAACAGTG-----GTGACATAAACCAAAG--CAGaagagaattttgttttattccaacCACAGCCTAGATGCAGATCCACAGAACTATATAAACCATGGGTTACTGATTCTAGCTGATTGCATTTTAATGTGGTCATGAGGTATTGATTTATGGGGTCGAGGAGGTTATGTATTAGCACAGTGGTCCCTGTGCCCTATCTAGTTTTCAATCCTGACAGAGGACTTTTGATGCTGTTAGGCATCCAGCTGGCATGGTA-TTAGTCTCCTAATCA-TTTCTCTAAGAAAAGCAGACTAGAGGGAAGAAAGAATTTGGCAATGCTAACCACACTTAGTGTTGCTTTTTTGACTAGAAGCCAGTTCATTGTACTTTCCAAATAGCTAGT-GATTGGCTAAAATTAAGGAAga-tgtttctaattcttttcaGTCCAGAGCTAAACTTTTCTTTACTAAATTCACAAAATCATTTGGAACCAAGTCCAGTACCCA

a score=24804
s chr3           156589667 1554 + 160039680 AAGGTTTTTAATAATTGTCAGAAGAAAAGACATTTAAATGTATAACATCTGTATTTTTGTTCTATGAATTTCAGGAATCTGGACTTTTTGAGGTTGGTTTCAAGGA-AGCATGATGA----------------TTAAACTGCCTTGGG------------GTGGAGAGCTAGAACAGGATAAAAAGGAAGTGAACCCCAGGGAGCTGGAAGG--GAATGTTTCAATAGAGCTAACCTTTGAGTCCCCTTCGCACT-CCATTCCCCCTATTTATTCTTGA-----ACGAAAACTCTAT------------------AATGTATCCAGC-------AGGATGGAAATAAGCTAATAGGCGAATACCTAGA-------------------------AGGCAGCGATAGACTGGCATCAATC----------------TTGGTTACGAATGTTCA-----TATTTCT----------CATTCTACATCA------------------CTTTTCTTCAGTCTTCACCCACTCCTATGAGGG---TTTGTATGCACAGTTCTCAGCTG--------AAGAATGCAGAGAAGTGGCTGAGCCACAGAGATCTCACTTGGACATTGGGTTACTTGGACATTGGGTTACTGTTTGTCTTACCCTGAACACTGCTCTATCAATCAGTCTGTTACACCAATTTTACATTCATTTTGC-ATTTTAT----CCTTTAAGGTAAATCCAAACTGTAATGTATCTTTA-ATCATGTAAACAAACT--TTGATATGACAGTGAAAAACTAAAATTGCTGTGTTTG---TGTGGAATATATATTCTAGATTTTTATATAAATTACAGATCATTATTTTCTTCTCCTTCTGTGAGTTATAACAATTAAATAAATATTGGGAAAC--ATTATGTTTGTTGTGGATAATGTAATGA--CTCCATAGTTGGAGTCATTACAATTCATAATTTTATTTAAATTCTGAGTGTGTATTTTCTACCTTATCATCAATTTAAGCTAGGTAAACTAGATGAAGAAGCCAGCAAGT-GAACTATCTTGCTT-CTAAGAGGTGAGTTGGGTAGA-AAAAGGGATCTGGCCAGTGGTTGTGTAGGTAGAGTTCTCCGTGAAGAGCAATGGAAGCAGGGTTTTTGGGA--CCTCATCTGGATGAACATCGCGTCAACA----TGTGACATTTCTTCATGATACCATACTAGTCTGAGGAGCACTCAGCAGACACTAATTGCCATCTGGTGAAAA----------AAAAAAGTGAAAATCTATTCAGTGTGTGCCATGTGTGCGTAATTGTTAACCTAATCAGCAGACTACCAAGACTGAGTGGTGCTGGTGACTGATATGACAGCTGTAAGCAAAGCCTGTGGCACCTCATTCTGTAAGCCAAATG--AACCAGTGATGGGGTGCCAATGCCTGGGATTTTTATTGAGTTGTACAATTCATCTCCCTTCTATATAGTTCATATAATTTCATGACT-GCATATGAAATATGAAATGAAACATACTTGTTTCTAGGGCTTCTTTTTGTTAAAGATAACTTTTAGCC-CCCACTTTAGAGAAAAGATAATGCATATTGACCACTGTTCCATAAAAGTTTCAGT-GCTTAAACATGAGATGTGCTTTTGATAAGTGATGGAAGGCATGCTTAAATAAGCAAAATGTATGTGCTGCACAGAGAACACATTTGCTCACACCAAACATAACACCTAAT
s HiC_scaffold_1 143756879 1651 + 233722169 AAGAGTTTACATACTTACCTGGGGAAATGATACTGAAATGTGTagcatttagaaatttttattatgaatttaagATACCTGGTCTTTGCTAGTTTGATTCTAAGGGCAGTGTGGCCAGGGCTCTGCTGTCATTTCAGATTGCATTTAGCATCTCTTAAAAATGGAGAG-TAGAGCA----CATACAGACCTGCACTCTCATTTGGTGAATAGCGAGACACATCAGTAGAGATGTTCTTTAAGTTATCTTCTTCTTATCATCCCTCATGGTTTTTcctgatagaaaagaaaatattacttaaaaaaaaaaaacacaaatgtctTCAAGTACATAGAGGAGGAATATAGGCTATCTGATGAGTGTGTatatttatcagtatttttttataaaaagaaacagtggtAATAGGTTACCACTTGCCAGGTATTTCTTAATAGGTTACCACTTGTCAGACATTATCTCTTTGTCAGGAGCAGTGTAAACCAACtcacatatatttaattttttccttaaactttCAATCACTCTTGTAAGAAATATTATTATGTGTAATACTTAGCTGTTTgatcaaagaaaatatagaagactCTAAGCCCCAGAT-CCTAACTTGAATTTTAAGGAA---------------------TGTTTTACTCTAAAA--TTCACTGTTAATCTTTTCATTAACTTGGTTTTATAGTcatattatgattttaatttacttatcACATAAACTAGATTTGGACTTTTTCTTTACACTGTGTAATTTTTCTACTAAATATGACA-------AATAACATTGACATTTTTACCATACGTAGGATATATTCTag-tttttatatg--ttttggactattaattt--tcttctctggtgaactgtataaataaaatacatgttaagaaatGAATTACGTTTGGTATTTGTAACATGGTGAAGTTACAtggttaaaataattataatacctAATCTTATTTTAGCTTCAAATCCATATTCTGTACCTCCTCATCAACTTAAAATAGATAAGCTAgctaaacacacaaacaaaaagcacattcttgtttgtttttatggaaAGTATGTAGAGAAAAAGGATCTGCCCAGCTG--GTGCATTTACAATTTACAGTAAATGGCAGTGAAAACAGACTTGTTTGGATTCTCCAGCTGGATTAGCATTGTGTCAACACTTTTGTGATATTTCTTGATGATATCATGGTAGTCTGAAGAGCACTTAGCAGATACTAATTTTCATCTGGTGAACACTCCTCGGTTGAAAAGGTGAAAATCTCTTCAGGATGTGCAATGCCTATTTAAGTTTTAGCCTAAATTGCTAGCTACTAAGA--------TGTTCG----CAGTAGAGTAGGTGTAAGCAAAGCAAATAG-GCATTGTTTTATGAGATAAATGTTTCCCAGGGACTGAATTCCAATTTCTAGTA---TGAGTAAATCAAGCAATTTGTGTCTGTTC-ATAcattttacattcttgcataACTAGTATATAAAATGTGGCATGCAA----------------ACTTC--TGTATTCAATACCAATTTAAGTTGTTTAATGTGGAGAAAAGATAATGAATGTTTGCTACATTTCCATGGAAGCTTCGTTGGTTTGAAATTAAGATACAGTTTTGATGCATAACAGTAGGCTTTCTTAAATGATCAAATCTTAAGTGTTATGTATGGGACAGAGT-----------AGCATAATATCTAAT

a score=5559
s chr3           156591439 227 + 160039680 TACTATCCAGGGCAAGTTAA---GATGTCCTGATTTCATTGGTCTTCAAACAGCTGTTTGTTTATTCTTCTATTCACTATCTATCCAACACCTATTGTTGTTTTAGACATTTCAACTCTCTTTTCATGTTGCTAAAAGTAAAATAACAGGTGTTCTTGAATTTGATCCAAATCACCACTAAGG----TTCTtgtcccagttaggtt-tctgttgctgtaataaatatcaaagtaa
s HiC_scaffold_1 143758519 227 + 233722169 TAATATCTAATACAAATCAACATAATATCCTAATTTGATTGTATTTGgaa----tgtttatttattcattca---aatatctATATAGAACTCAATAT-ATGCCAGGCATATTTACTCTCATTTCATGTTACTGGAAACATAATAATTGGTATTCATGAATTTGATCTAGATAATCCCTCAtgccatttattattttatttgaattatttgtaagtgaaatgtatttcacagaaa

a score=34622
s chr3           156593584 2739 + 160039680 CAGTGGGTGTGAACTCTGACAGCTCCCAAAGGCTCCCTCCTCCTCTTCACAGGAGGCATCCTGTTTC---------TTCTCCTGCA----------------------------TCTGCCT-----TCATATCCTCTGCTACCTTAGCTAAATGGAAAAGATCCACTCCTGGCTGTGGTTCAGGAGATGGCAGAAAGATTAATACACCGAGGTAGATGATGAGTGTTGGTTTATCAGGAAGCCCCTCTTCAGGCTCATTTCCAATCTATAAAAATATCCTAATTTTGTACCTTGATCTCAAATTCATTGTCTGACTTTCCTGCCTGAACTTCTGGGCATCTTGCCTAATGAGATGAAACTATTCCCTA-AAAGTCCCCAATG--TCTTAACAAAAATACTCTCAATCCCTCAAGTGTTTCCCAATGGGAGAAAATGAACATG------------------------------------GATGAGAAATGGAACTGTG--------TTGTTCAATATCTTAAGAGAAAATCACTGCTGTCAG-GCTCAGCGCAAATTCTGAAGCTAGAGTGCCAATTAAGTGAATTTAATAAATTGAACTATTTCCACATTCTTCATGTTATCCATTGCCATGGCTCCCACCTTGAGAAACTTCAGTACATAAGCTTGCTGGTTTGTTTGAGGTAGAAAGTTCTTT---AAATTAAAGCAACAACAAAAGCAAACAAAACATA-AACACCTTTTAGGTA-ACACT---AACTGATTGTTCCATAGCAACATAAATATTTCCTATT---CCTGGAAACTGTCACCTTTCCTTGACTTTGACCATTCATACTCAGCCAGAGATATGCTAGATGTATTCACAT---CAGTTATTATCTTTTCCCAGATCTGTGAATCAGGCATGGGTAAAATTACATGTTACTTCTAGGAAAGAGCGCATGAAGACCCCAGAATGAGCATCCATTTTAAATGAAGTTATAAGTTAAAGCCACCCCTACTGACCTTCCCACCACATCTCATCTTGCTCTCCCTCTGACTCAGCTCCCCTTAGCTAATCTTCCTTTCTCTCTGAATCACCTCACACCCACTCACCCTTCCCTATATTATTTTTCTTGTTTCAATGCACAGAAAAGTTTTTTAAATG--AAAAATTAATTCATAAATTATAGAGTGACTTTAAAGCCACAAAATTTAACTATTAGAAAATAGAAATGCACAATTATC-------TTTGAGATAGGCTAGAATTGTCACTATCTGTGCATGGCATACAACTGTCCACCTCACTATGATAAAGTTGATGTCCTTTTGAATTCTGTGAGTGAGCTGGGACCCATATAGTATGAGTATAGGCTATTGAATAAACTTTAACTATGCCAGCCAAACCTGCAAGATATTAAGTAGATAGTTTCTATGTAAAAA---AAATTAGATATTGCTAATCTAAAAGGATTCGAAAACCATGCATCTTCTAGGAAAATACAC-TTTTATACTTGTATAATTAATTA-TTGCAGACAAACTACCATGGTGTCCATACAATAAAAATGAAT-TGATAAAAGTTTTCTAAATTAAGTCTCT--------TCTTTT------------TTACTCAGTTTGTCTAAAC--TATCATTTAGAATGAAGGAAATTTAAGTTGTAGAACTAATCTGAGAAAAACAATTTACTAGACAGTTATAATGAACTCAAAGGAGGGTGAATTTTTGTCTTTTGTGTTCTT---TTGGatatatatatatatatatatatatatatatatatatatataGTCTATGTTGTGATT-GTTTAACATTATACTGGACTAACATTCTAACATTCATAGAAAGTGTGGTTATTTAGTAAAATTCTATAGAATGCATGAGGCATGCTTTGTCTAAAATGAGCCCTTGCTTAAAAACACAAACATAAATTACTATAGAATGTGCATTGTTCAGCTACATAAAATACATGCCTC-TGCAAGGTATAGTCTGACCTCACAAGGTGTAACATGCCCCTGAGCTTCAGCTTTTATACCCAGTTGCAGGAGAGTGTGTAGGAAATAAGAGTTGCTTTTAATGTTCCATTA--CTCTACACACATTCTCTATTTTTACCCAAGAATCTTCACATAGGC--AAGAGACCATCCAGTACTTCAGCCAGGGCACATCACAATGAAGGAATTCATGAGTTTATAAATCTATCGGTCCTTTCAATTTATCTGGAGAGTTCTGGCCAACAAGCTAGATAGCAGTACAAGGAGTAGGTCATCCTGGGAGATAAGAGCATCTCCATATCTGGGCAGTGGCGATTTCCCAGT-GGGGAGAGCTCTTCAAAC-TGTAGATAATGGCCTGTT----ACGGCTCGCTGCTGGCACAGAAAA-TCATACTCTTTTTGGTTTCTGTATCATTTGAATGTGTTTCAATGGCTATGATTTTATTTAATTATGTCAAAAGAGCACATGTGATCATTATTAA-GTTTCTAATAAAAGTGGAC---ACAGGGAAGGGATTTCATATACTAATGTAGACCTTGCCTGTTAAAGCCCTTTAGCATCT---GGTGTCACAGGGCCCTGAGACTTTTCAGCAGTAGCTTGTGCTA--CGTGCACTGTATTTATAGGCAAACAAGAAAAGAGAAGGGAAGTCTTCCCTGACTCATCTTACATAGTCCTATTACATTGGATGATTTCTTATGTAAAGGGAATGTTCGGTATTTCCTTGTCTCTAGTTTAA-AATGCAGCTACAT---------TGAGTTATTTCTATAA-----TGATTTATCATTACTTTTTC--AATGTGCATGTACTTGGGAAGTGTTGAGAAATACTTTTCTTAGGAGCTAGGCAAA-ATGTAATTAGGTAGGAATATAA-AGGACAtgcattaatcaggattcctcaggaaa
s HiC_scaffold_1 143760003 2489 + 233722169 CAGTTTACATGATCTTTGAAATCTCCCTGAGACTTTTTCCATTTCT--ACTGGTAACATTATGTTCCAGCTTGCATCTCTTCTGCACAAACACTTAGTATTCCTAGGGTCTTACTTTGCTTCCATTTCATGTTCTGTGTTCCCGTAACTGAATGAAAAAGACCCATTCTTGGCTCGGTTCCAAGATATAGCAGAAAGATTCATATATAGAAGT-GAAGATGAGTGGTGATTTATTATTTAATCCCTCTTCAGGCTCATTGTCACTCTATAAAAGTATTCTAATTCTGCGATTTGATCTGAAATTCATTGTCTGACTTCCCTGCCTGAACTTCTGGGCATGTAGCCTAATGAGATGGAAATATTTCCTAGAGAGTCCCCAAAGCATCTTAACATGAAC-TTTTCAGTTCTTCGAGTATTTCCAAAAGAGATAAAGTAAAAATGGGACTATTAGAGATTCTTTGTTGACAACAAGGAAGAGATGATAAATGAAGCAATGGGATATTATTGttcaacattttaa-acaaatacacTTCCCACAGAATTCAGTATAAACTCCGAGGCGACATTAGCAGATA----AATTTGAACAATTAA-------CCACA-TCTTTAGGTTTAAAACAGCCAATGCATCCAAATAAATTAAACCTCCTACATATTCTTGTCAAATTATT-----------GCTCAATGAAAAATTGAAGCAAAAAC-AAAGTAACCTGCAAATGCAATTCCTTTTAGGTAGACAGTTAAAACTCACTGTTCTTCAATAAGGCGACTGCTTTCTAGTAAGTGTGTAAATTCCCATATCT------------GCACATATgctc---------tatattatatatatatatatatatatatagtat--------agaac----AATCA--------TAAAGCTGCATAATTTAgttatcaaaga---------------aaaatcaaca--cATGTTAATCACAGGTGCTGGT----------------------------------------------------ATGAAGCTTGTGTGTACTAAACACATTTATGGTCTGAG--ACTTCACAC-----------------TAGTGTTT------------------GAAATGCTTTCCAGACTCCAGGAATAGCCTCATATAGTACTAAGTG---------------------------------------TGTACAATCACCTGTCTCTTTCCACAGAGCTGAGGAT--TCACGATGCTTGCGAGGCAT---GCTCTCCACC-------GCTAAACT-------------------------------GCACCCTCAGCTCCTAAAAATA--CTACTTCTTCAATGCTTACTTCCCTAGCCAAAT--------TGTTAAGTTGCACATTTTAATGTAAAACTGTCAAGTGGATGT------TCTGTGAAGATCCAAATAAAGTATAGCTAAtaagaaaatgtactttttatatttatacattcaAACATTTGTAAGCAAGACACTGTGAtatcaacacagtaaaaagtaatgTGCTGAAACTTTTCCAAATAAAGCTTCTGATCAATATCTTCTAGTAAGAGAACCTTACTAAATTTGATTGAAAGGTATCTTTCAGAACAAAGTAAAATTATACTGCA----TACTATAAGAAATATGC------------CTATAGCATATTT------------GTGTTCGTCTTTTATGTTGTTgtcttaaatacatatttttgt-------------taaataagtATCTCGCAATTATTATCTTTAATTCATTATCATGCTGG-------------------TGGAA--TCTGGTTAAGTAATATAACTTACTGGAAGGCATG-------------------------------------------------TTACACTTAATGGTGTAGTGGGTAGCTGT----AGTACAAGCCCCATTTAGGGTACAATCTGACCCAGCAAAGTATAAGAT---CCTAGGCTAC-TCTTTCATGTCAATTCACTGGAAAATTTCTCTAG-------------TTTAATGGCCAGTTATTCTCCccacacattttctgtttttgctaaAGGATCTTCACACAGGCATAAGAAATCCTCTGTTGAATTTGACTGGGGTTCCTATAGTAACAGAATTCATGTGTTCATATACCTTTCAGTTCCTTCCATTTATATAGTAAGTTATGAGTAGCAGGCAGGGTAGGGGTACATGGAGCAGATCATCTTGAAAAATAGTTCCATCTTCATAATAAGGAGGTTGCTATTTCCCAGTAGGGGTGAGTTTTTCAAATGTACAAACAGGACCCTATTGTAGAGGGCTTGTGACTGGCAGGAAAAACTCACATTCCTCTTGGT----------TTGGCATGTATTGCAATGgctgaaat----tttaattatatacaaGGAGCATGCGTAATCACTGTTAAGGGTTCTGATCAAAATGGATATAATAATAAAGGAAT--------CTGATGTAAAGTTTGCTTAATAGAGCCCTGCAGTATGTGAAGATATCGAAAGACTCTAAGGCTATGAAACAGTAGTGTATACTGTCCATGTTTTGTCTTTATGCGC-AACGATAAATGAAA---GAATTCTTCATTGACTTGCTCtgcacattttttaaagttttcaacaTTTATTACTTGAGGGAAAGGATGTGTATTTAATTGCCCCAAGTTAAATGAAACAGCTACATATTTTTCAGTCAACCATTCTTTTAAACAAGTTATTTTTTATCTATATGCCATAATATCCATGTACACTGTATAGATT-AAAATTAGTTTTCTCACTAGGTAGGGAGGCAGGTAATTAGTTACACGTGTAAGATGGCATACA--AGTCAGAATTTTTCAGGGaa

a score=13748
s chr3           156606321 1040 + 160039680 GAGAAATCCTGTAGTATAGAGAATATTTTCTGACTATTCTGAGCAAATAGAAGATGAAACTGTAATAAAATATTTCAGCCCTGGCTCAGTGTTCTAGCACACAGTGTTGCTTGAGTCTTAATAGCTCTTTCTTCATAACATTAATCTCCTAAGATTATTTTATATATTTAG--------TGTGCTCTGAAATATTA-CAAAGTGAATCCCATCTCTTCACAGAAAACCCAGGCTACTGAGAGTGACTCCTTCAGAGTTCTCAT----CTCAGAGGAAAGCAAACACAAAGATAGATTTATTAATGCCTTT--TCCCCTCCATCCTTTTCTACAGCATCAATGGCACTTATGAGGGAAGAAATGGCCCATAGA---TGATAT-TTGACACTGAAACACTTTATCTATACATACTTGAAATATATAGAAAACCAATAAGGTTATCTTCA--AGTGGACAAG----TACCACATGCCACATCAATATT---------GTCCTCATATCTTCACGACTGACCTTTGAG---TCACTACTCAAACTTGTT-----TAAGAAGACCATGCCTATGTAGATGTT-ATGTTGTCTTAAATTCTCATGCCCTGCTAACTGCAATTATTTTTTTGCTCACTCTGGTTAATTTGTC----TTTTAAACTTGCACTCA---ACTTTCTCAACATGTAATATTAATCATGTTATTGTTTTTTCCATGGGCTGCGATGGAGTTTTACTATGAATAAAATGATTCATGGGTCTGG---AATTCACTTTATTTATGCCTCTGAGCATTCTTGCT---GCCATATTCATCGTCAGTAAGTAATTTACTGTTCTCTT----TACCAGATCTCTTGCCTTTAGGTCATGC-----TTACTGTTTACCCTTTACTGTAAAAAATGAGTGAATCG--TATGTGTGCACTGCAGTTCACATTTAACACAAATACC-CACAAATGCAGTTGCATTTCATGTATTCTCCATCCACCCTCAAATTCAC-TCTAAATTCTTGTTC--CAGAACTTTTAAAAATGTTGTCTTCTTATTGTTATTTCCCAATTCATAAAATATTAATAACTTTCCATCGTCTGACAAGGTACAGGTTTC
s HiC_scaffold_1 143775319 1070 + 233722169 GAAATATCTTAAagtataaaaaacattttctaactGTCCTtaacaaatagaaaatagaagCCTG-TGAGACCTTTTAACTCTGGATGAGAACCCTAACATACAATGTCACTTAACTCTTAATAGTTCTTTCTCCATAATGGGAATTCCTGCAGTTTATTTTATGTATCTAAACTGAAACTATACgctgaaatattagaaaaatgagTCTTAGCTCTTCATGAAAGGCCCAGGA-AATGAGTGTAACTTGCTCAGA-CTGTCATGTACCTCAGTGGAAAGAGAATACAAAGATAAATTTGTCAGTGCTCTCTGTTCCGTTTATTCTTAT-TACAGCACAAAGATCACCTTTATAGAGAGAAATAACCAATAAACACTGACATGTTAAAATCAGAAC---TTATATACACA-ATTTAACATGCAAAGGGAAAC-TTCTGATTATTTCCAATAGTGGACAAATTTTTAGTGTACTTTATAGTTGTATCTGGCTGGAAGTCTTCATGCTTTGCATTCTTATCTGCAAGATCTCCCTTTTGAAGTTTGACCTCGATAAATAAATATTGCTTAAGAATATGTTGATTTACTGTTAAATTCTTACA-CTTGCTTGCTCCAGCAATCCCATAG------------AAATTCTCCCAATTTTTAACTGTTACCAATGTCCCATCTCAACACATAATTTTACTCATATTACTGCTTAC----AGGATTAAACTGGATTGCTATTACAAAGGAAAT-ACCTACAGGAATGTCACAACTACCTGTATTGAGGGCTTCCCGTATCTTTTTCTAAGTTAACTCTGTCCTCAATGAGTTATTCTCTTTACTATTGTACTATAGGATTCCATCCTGATACATAATTCAGGTTTTACTCTTTGCTCCTTTGTATTGCAAATTTGCCTACTATTTACACATGCTTTGCACTTC----TTGTTACATATGTTATATAAATG-------ACTTTATTTCCTATCCTTTTGTTCCTA---TCACATCCAGCTGCCTGCTTAGCAAAATCTCTGCAAAGCAAATCTCTTTCTACTCTTTTATTGATTCAAACCTTATTCATGAATTTCCATTCCCTAAGAAAATCCCTGCTTC

a score=40153
s chr3           156610267 1047 + 160039680 ATTTAACATATTTTCTCAGTTAAGATGATTCAAGAAG-----AATGGGCTAATAGAGTCAAGTATTTTA--AAGAAATATGAGGCTGAATGGCTACC-AGTGGTCACTAGTGATTCCTTAATGTGCATCAGGAAGTCGTCAAGATTTAGGTGTGTAACGAAGAATGAATATCCTAATTTAATTGACATATTTGACAACTTGTGAAATGCATTTGAAATCTATCCAGATTTTCTTCTA-CAACAACTCTCTTTCTAACAGCAAGGCTACAGAAGTAACTTCACCACTCTCACTTG-GCCAATCAGCACTACCATTCTTTTTAAATCAGTTATTAGGAATACATAATTATT-GGTAATCAATTATCATTTTGG---ACCAAATAAGATTTTGATAGACATA--TAAATAAGCCTTTAAGGAGAAGTCGTTCCCTCACAGTATGCACTCTGAATTGCTTGCGTGGGTAGA-TACAATTGAGGAGTGATTCATCAGTCACTTACCCAGCAGTGAGGTCTGCAGAAAAGTCCACCCAATGTGGCTGCTCAAAT-GTTCAATTCTCTGCAATCAGAGAAC-CCCACTGTCATAGTGATTATCTGTTTGATATATTCTAACACACTGAGAAACTGTGCAA-GATCATGTGGGTTCATTGTTCATTTCGCTGACTTCTTGAAGT-ACTGAGTGGGGAAATTACACAGTACTCTCTCCATTGTATGGAATCTGCTTTCTGATGACAGCAGAGGGTCCTAGAAGAATGTGGAATTTAGAAGCATAATTTTCATTACTTGTTTGAACAGCTTTTACTTATTTGGGAAAACATCTTTCAAATGAGATGGCAAGTCTAATTCCCTAAGTCAATTTCAATTCTACATG-TTTTAGAAATACATTAGAAACTTTGATTATTGGTTCTGCTCATAAATCAACTTTTTATATGAATAAAATA-------TAATTACCAGAAATGCAAAACTCAATGTTTTAAAATTTGGCTTTAGTATATTTTGCTGATTGTTATTACACCTTGGCTAAACTTAAATGCTGTTTCTATAATGAAAATCTGAGCTTATAAGCCA
s HiC_scaffold_1 143778142 1053 + 233722169 ATTCAGAATGTACTTTGGATATAAATAGATCAAAAAGGTAGAAAACAACTGACAGAGAGtactattttataaagaaatctaGGGTTCAAAAGCCAACGAAGGGCCATTAGTGCTTCCTTTATATGGATTAAGTTGAAGTCTAGATTTATGTTTCTAATGAAGAAC----CTCATAATTTGATTTACATATTTGATGACTTGAGAAATGCATTTGTAATCTATCCAGGTTTATTTTTATCAGCAAATCTATTTCTGACAACAAAGCTACAAAAGTCAGTTGATACTTCCCATTTGTACCAATCAGAACTAC-----TTTTTAGA-AAGATATTAGGTACAAGTAATTTTTTGGTAATCAGTTGTAATATTATTACACCAAAGAAAATTTTGGGGGACACAGGTAATTGCATTACTAAAAAGA--TTTTTAGCTTTTAGTGTA-ACTCTATACTGCTTGCTTTGCTAGAATTAGACTGGCAAATGATTCATGTGATATTT--CCAGCAGCGAAATCTGCCAAGTATCTTACCCAGTGTGGTTACTTAAACAGTTAAATCCTCTGCAATCAGAGAACTCCCACTGAACCAGTGATTATCTGTATGAAATATTCTAATGTACTGAGCAACTGTGTAAAGATCATGTGGATTGATTGTTCATTTTACTAACTTCTTAAAGGGATTGAGTGGAAAAATTACACAGTACACTCTTCATTGTACAAAATCTGCTTTTTCATAAAAGTAGAATGTCCTAGAAGAATGTGGAATttagaaatgtaattttcattGCTTGTTGGAACAGATTTT-CTTATTGGGAAAAACATCTTTGAAACAAGATG---AATCTAATTCGCgaaacaaattttcattttacaagcttttaaaaataaattagaaacttTGATCATTAGGTCTCTTTATGAATCAAtcctaaaaatgaataaaaaagatgcatTGATTACCATGAATATAATACTCAAGGACTTAACAGTAAA----AGTATATTTTCCAGATTGTAATTTTACTTTGCTTAGATTTGCATACTGCTTTTGCAATAAAGATTTAAAAGTCTCAGTCA

a score=19030
s chr3           156613651 1341 + 160039680 tctct-tttctctctctctcttctctctctctcctctctctctccttctcC--------CCCCACCACTATTCTCACTTTAATAGAATGAACTCACTTGCAAATTT------TAAAATTGTTCTCAATAGACTCTGTAATAC-CTACTTCTGTAGCCTTGGGTAAGGTTTGGGCTAACTTTTTAGACCTGAATATCCTCCTGGACATTCAA-CATATACCTAATAATAAAGA--ATAGCAATAGAGCCACAGGTC---GTGGGCTTCT-----TTAAACACCAAAAGCAAAGAGCAGGTAATTTGAAGCACTTGCCTTTC--------CATATA---CAGACCCTCCAGAGATACCTGTAAGAAAGAACTATACTAACCTCATTTTAAATAGCACCCACCACTTTCCCATCTCT--CATTCCACCTCAAATAGTATGGTTGTACATTAGGAAAAGACTCAAGGCATTTGACCACAAACCTAATCAGTTTTCTAATAGGATTGTTTCCACTAGCACAGTTCTCAAGAGGAATGTTATGAAAAAGAGCACTACACCTCAGAATTCAGAAAATATTGAACTACATTGTATTTCTATGGAATCCTGAGTTCTT-----ATGGACACTCAGTTCTACCGTCATTTTAAT---------CTTACAGCAGT-TCTCTGATCTTCATCAAAAAACATTTTTAATTAAAGCACCTGTCATGCCTCTGTGATCCTGCCACTGGTCTCCTCTGTAATGAA-TTAAGCTGGAGACACATCTTCCTGAGATG--TGGCTGATGAGACC--GAGGACAGCGATGGCAAGAACTGGTCTG--AAGTGCAGTGGAGCCTATCAGCACCTTGGTGCCGAGGTT-TCCTCAGGGACTCCTGCCAT--ACAGCACTGCCACGATGTCAGGAGATACTGATCCTCTGGGTCTG--CTACAAGTTTATTCTCTGATA-CCTTTAATTTACTTATTGAATGCTTCAACATGTAAATGA----------TATTTTAACAACCCTATCATAAATGTAA-TTGGTAAATGAATAACA------------TTTTTAagagagagagagagagagagagagagagagagagagagagGGGTATAAGGAGATGGTGTAATGCTGTGTCTTTGTCAATGTTCAGCAAATACACATAACTGGG---GACTTAATGTTGTACTTTCTGTATAATGGATGCTTCTCTAAAATTTT-CGCCTTAACCAGTGGCAGTATTATAAAGTAGGAAGAATCTTTATTTGACCTGTAG-CATTA--GTCACTCTGAAGGCCACTTAGCAGCATCCTCAAGAAACAAATC-ACCTCAGAAGGAACTGTCACGTTCATTGTGTTTTCTGTTATTAAGTTGAATAATTTGTTTCCAGAAGAATATATGTCTGACAGGTTTTTAAAAATGTCTCCCGTATTGT
s HiC_scaffold_1 143783924 1374 + 233722169 tctctgtttctctctgtcctatgtctgtctc-cctctgtctctctctctcaagaatTAGTAGTAGTATTAATTTGTGTTTAAGAAAATGAACTCAGTT--AAACTTGGTGAATAGGATCTTTTAATCCAGACTTTGTCCGGCATTACCTGTGTAACCATGAATAAC-TTAGGAGTTATATCTGGGAGCAGA-----------GACCTCCAAGTATTTAATTGctcataaaaataatgacaagagGACC-CACTTCACTGAGaagttctgaaaattaaatatcacatgtaAACAGCAAATAATTCATCCTGTTTGTTTTCCGTGTCCACCATGTAAAACACTTTCCCTTACGATATCCATCAGATCGATTT----TCCCTCCATTTTAAATAGCATCCTGTGTTTTCCCATCCTGTGCCTTACATCTCAAACAACATAGTCATACATTAGAAAAACAGTCAATGAATGCAGCAGCTGTCCCAGGCAGTTATCTTAGAGGGTCATTCCTATTGTCATGCTTCTTCAGA-GAATGTGACCAAACAAGAATCTGCTTTTCAGAACTCAGGATCTGTGGAGGGCCATT---CCTCAGTGAAAGCCTGAGTTCTCCAGGGGAGGACCCTGACTT----AGTCATTTTGATAAAACTGAGCTTCCAGGAGTGTTTTTCCTGTTCATC-AGAAGCATTTTTAATTAAAGCGGTGGTCCTGTGCCTGTGATGTTGTCACTTAT---CAGTGTAATGAATTTAAACTGAAGGCTAATCTTACTGTGAGGATGAGCTGATTA-ACTGGGGGGACTGCATGGGTAATAATTAGTCAGAAAAGTGCAGTGATGCAAATCAATAACTTGGTGCTGAGGTTCTCCTTGGGGAATGTAAACAGTAACAAAGCTGTCAAGCTACCAAGAGATGAGGAGAATGCTGGTTTGTATTGTTAATTTATTCTCTTATAGCCACTAATTTATACACTAAAtacctgaaaatgaaaataaaagatacatttgcTTGAATAAACCATACTGAAACCTAAGTGGGTGAACTAAAcacatgtttctttttgtttttttgaaagagaaag-------------------gcTATCAAAGAATATTAGAAG-TATTATAATGTCATTTTATTGTCAATGTTCAACAGATATGTATCACTTCACTTGCTTTAAAGTTTTA--TGTTACATAAGTAATGTTATTTcaagtttttgtattttaaggtAAGGAAATACTGTACAGTAAGTAAGATCTTAAAC--ACCTGTTGATATTACTGTCATTCTT--GGCTATTAAACAGCATACTCTATGAGTGAATTAATCACAAAGGAAACTGTGGCAATCTTTAAatgct---ttattcattttaata--ctACTATCAAAAGAATACA--TTTGCTGGGACTTTCAAAGTGCTCCGCTTtctgt

a score=15717
s chr3           156619868 1312 + 160039680 TCCTTTAGCAAATTAATTTTATCGAGTAACTTTACACCACCCAACATGAATACTTTATTAAGGATTTGTTGAAGTGCCTAATTTATCACCATGTCAAGTCCATGTATATTTTCATTGGGAAGAACAAAAACAATCAAAATACATCCTCTGAGCATATGGAAAGACTGAGTCAGTTTTGCACATGTTTTACAGAAATGAACAGGATAAAAATATATCTGGCTCTAGGAACACCCAATT----CTTTTTTGCTTATTCCTGTCAATTATGCCTAGTTTTT--CAGTGTACCGACTTGCACGGTGCTCCACAATGTGG--TCCAGCC------ATAATCATTGGTTCACAGTCAACA----CACTGGCATGCATGTCCTCCTTGTCT--CAGTGTGAGGAGAAAGATGTGGCAGGTATTGATTGTCTCTAGAG------CCATTTTTG-TGCCCATGCTTTTGTCCATGGCCTTTTCACA------GCATCCTATCCACTCCTCCC-TTCACCACATTTTT-ACCTTGCAATTTTTT--CTCAGTTGACTTTCCTCCAATGATCTTCTGTGGCTTCTC------AGCACAGGTATCTTCTGAGCT----CCATACT----GGATAAATGGATTTTTGTCATTTTATAAATCTCTTTCTTAATA-TTATTAACGTCAACTGTTTG----TTATCAT-----TCACATTGTATTTAACTTCTGGAAATTTGGTTA-ATTCTATTTCTCTGTTG---TGGCATATGG------GTACATC--------------------------------TCAGTACATCCCATGTACTGAGG----------------AAGTAACTGTAA-----ACAATGA---------TGTTTTCTGAGTTTAGATGAC-AGGTAAGCATGTATATAAATAGTGTTGCAAAATATG-------------------------------------AGACTATC-------TTTAGAAATTTAACGTTTGTGTTCTTAGGTATAGTCT-GTTTCATATATTGGTAGAGTTTGGATAGCTTCTCTGTCTAGCTGCTCACTAATGAAGTTGGCTTTCTGAGAAGTAATGTAGCCAAAAGTGTACATTTGGTCATGCCAATTTAAGGATAGTACCTACCCAGTGCTCTATCTGCAACTCTTAACATAGAAAGGT-TGAATAAAAGTTATTTCAAAGCATATCTCAATAAAGGGAAATTTTAGAATTTGCAAAA-TATTTGCATAGAACATTATTAGGTGCAATGGTAATGATTTTCAATGACAGAGGGGGCAGAGAGAACCCTAATACAAATTATTAATCTTGATTTTTTTCTGTAGAAATTCATCTATGATTCTTTAGTATACT--TAAAGTTGGATGAGTCAAAACTACATAAAAATCTTGGCAAA-ATCCTCACTTGGTTGG-TAGTAGGCATCATACCAC-----TAACTG----ATGAGCC-ACGCCTTCTAGTATAAAGATGTCATT
s HiC_scaffold_1 143790111 1461 + 233722169 ttcttttatgaattaCATTCAG-GAGTGTTTTCACATTACCtcatacaaaaaaatt--taagggTTTTT--AGCTGCACAATTTATCACCATGTCAAGTCCATGTGTATTTTTGTCGtgaagtacaaaaacaacaaaaat-catacCC-----ATATGGAAAGACTGAGTCATTTTTCTAAATGATTTACAAAAATCAGCAGGATAAAAATATATCTGGTGGAATAAACATTAAATTGAGGCTACATTAA-TGTTTTTGTGAATTATACCTCATTTTTACTATTATAC-----TCTAACCTGCTTAATCATGAAATTTCCAGAAAGGAAGACGAACAGTTCCCTGCAATTAATAACTTCAGAAGCTTCTAGGCCCCTGATATCTTCCACAGTAATCCCCAAGATGCAATGTGTGTTGGTGTGCACTGGAAGACGGTAAATTTCCGAGGTATAAGCTCT--------GCCTTTTCACCTCAAATGCCTTCTCTCCATCCCTTCTAGCCACCATGTCCCTGACTTCCCGATTGCTTACTTCAGGTGATTC----------ATCTTATGTTGTCTCTCTAAGCTATCACAG-----TTCTTAGTCTCTGCCATACCCTTGTGATACA-GcatggtctttattttaaaaacaacttgcTTTGTACTTTTTTATGACAACTGTGTAAAACTTTTCATTCAAGTCACAACGTCTTCAGCTTCCGGAAG--TGgcaatattttatgtttcttttgcccTAACACATGGCAAGCTGTTTATCTTGCTGAACAAAAGAGGCGATTTTAGAACTAATTAGAATATTTCCTGGATTGGGGTTTGTTGTTTCCACACACGTGGATGTAATTTTCATTATcacttctttattgttttttttttcctcatgctGAGATAGAAATGTTTGTAAACAATTTACCAATTCATGCATAAGCATTAATTAATGACAAATGAAAATCATAATCAGATTATCAAAATATCTTAAGAAtccaatatttttgtctttagtaattgtctggcttcatttgctattagatttttgagaaattggGT-TCCAGCTGcccaccaccaagcctggctttctGAGATGATGTCCAGCCAAGTGTGTTAATTTGGTGCTCACCATTTCAGGTCAGCA-CTAACCAGTGGACCATCTGCCACTCGGGCTGTAGGAAATTctgaggaaagtttatttcaaagCATAAGATGCTAAAAAGAGAATATGGCTTTTGCAGAACTGTTTGAGGGAAAGAGGCATTAGTTTAGAAGTTAAGATTTCTGATGATA-AATTGACCGAGAAAAGttgaatataaacaatttatCTTACTTCTTGTTAATATTATCActcttattcttttttgcttaacTCCTGAGGCTAAATGGATTGAAGCAGTATAAACATCTTTACCAATATCATTTCCTTGCTGGCTAGCAAGAATCAGAACGCATGTATAACGGTTTCATGaaccttttcctttaaaaataagcatttcatT

a score=34936
s chr3           156628454 1762 + 160039680 ACGTTTCTTTAATACTCGGATCAGCCATTCATGAAGATAGAGTCATAAATGTTGAGGTTGTTT--GCTTTCTTCTCATAGATTTCTGTGGATTTGGAAAT-GCATTTGTGCCAAGACAGAGATAAAGTCATTTATTAATAATGTGTGTTTGTTATTTT----AAAAAGTGTTTTCCATGCACACACACACACAAAATAGCCTAAActtcctcccccacagaattaatacacccatctgggctcatgtcagatctaattagacctcgagtataacatttaccatatcacatcctattagagtttgttatgtatctctttgtcttctccaccaacctcaagccccagagagtataagcgtctcctttgtctctgtatccccagcaactggcatcatctttgacaaatagcaggcattcagcaaGACAGAATCCATATTGTTTTGAAAAGCAATCAAGTAAATGAATGGAAGTAGTTTTTAATTAACAAAAATCACCTGTTACCTATCACACTGTAATGTTTAAATTGCTAAAGAGTCCCACAGGATTGTGAATGTAAGAGAATCCCAGAACACTAATGAGAATCTAACTCCAGGTCTACTCTACTGGAAACATTGCTCAACATGAACTCGTGCTTTTAGTGTGGATTTGGGTAAATCTACAG---------AGGCACTTTGTAGTTG---AAGGTAAAGGAAAGCCCTTTATTCTCTTGGCTCCTAGAGTTTTACTGTGTGTC--AACCTAATTCATTTCCTCTGTTCCTGGAAATCTGAGTGGGTTGTGGCTACAGAGGGCAGGGTTAGATTCTGCTCTA-TGAGTTGGGTCAGAACGCGAATCAGAAGGCTAAAGGAGCCTGCTGGTCTCAGC-TCACGAAGCTAGGTTGT----------------------------GCATTTTGCCCCACAGGTTATTTTTCTATTA------CAAAGTAAAT-------------TTCACTTAAATATA---CTCCAGCAAGCG--TCCTAAGTGCTCAG---ATGTGCACCTTTC----------------ACTGCCGTTAACACCACTTCATATTTGGCTACTGTTTTCTGCGTTATCTTGTGAGGGCATTTCTCAGTCCTCTCATTT-TCAGCAT---TCTGTGCCTTTCCAGATCTAATGGTCTGACTCAGT-TTTCCACAACAAGTTCTAGAAGGGAACCTGGAGACAGTTTTTGCGTTGATCACAAATCAGAAGTGGAAACTGTCACCCACTAACATGTTTAATTATGTAACAATTATTCTCACTGGAAAATTAAACATA-GCTGCTTGATTGTTCTCTACAATAGCTTTGAAGTAAAAGAGAGAGTCAGTATCCGGTTCTATGTATAAATTATAGCTCATTAACATGGTCTCGATTATTTTATATTGCTTTTTCGTTGTCCTTGTAACTCAGGCTATAATAATACTGGAAGGAAGTCAACATGTAATTAGTGCAACTATA-TGAAAACAGATTGCCCTGTTTCACATGCTGTGGACGCCGAGGGATTCACAGAGCTGGGGAAAATGGCAAGC--------ACCAACAGTTTT-------CCTTTTAAAGCCCAGCATTCTTCAGTTTTAAATCATATCACcacatacacacacacacacacacacacacacacacacacacacacacacacacCAAAAACCAAACAAAAAAACCCAAAACTATGAAGGTTCCACTGA-AAAATGATCAGGCATCTAAAAGGGCAAGTGGATTAGCTTTTATTGGCTTATGGCTTTTCTCGCTAATGAGTCTTTTATTCTAAGAAATCTTTTTTTTCTTTCTTTCTTTTTTAAATTTAATTTGGTGTGTGCATGCAGCTAGAGAAAACA
s HiC_scaffold_1 143797009 1729 + 233722169 ATATTTCTTGAATTTTAGGCTTTTCTGTTGGTGCAGATATTTTCATAAATGTCGaaagtatttctattttcttctcagAGCATGCCATGTTTTCAGAAATAGCTTTTGTGCCAGAACTCAGATATAATCATCTGTTAATAATGTGTATTTGATGCTTTTTAGAAATAGCATTTCCCAT----ACACACTCACCAAATTGCCTGACCTTCTCCCCCCA--GGATTAATCATACCATCTGTGCTCACATCGTATTTAATTATACTTCTCGTGTAACATTTACCATGTCACATTATGTTAGAGTTAGTTTTATATCCCTTTGTCTTTTGCACCAAACCACGTGCCCATAGAATAGAAATAT-----TCATCTCCATATCCCCAGCAACAGGCATCATGTCTGACATATAGTAGACATTCAATAAGACAGTA-CCTTACTATTTTGAGAAgccaacaagaaaataaatgcaaata-tttataattagCAAAATTCACCTGTTACTCATCACTCCTGAATG----GAAAGctaaagaggaggaaaggattaTGAACCCAAATGA--CTTGGAATACTAAT-CGATTCAAGTTCTAATGTGAGTCTACTAGCCATGTACCCGAAGTTGACCTTGAAGTTTTAGTGTGCTCTT-----CATCTGCTGTGACCTTTAAGGCAGTCTCTAACCACCTAAGGCCAGAGTCCGTGCTTTATTCCTTTGACTCCTGGAGTCTTGCTGTGAGTCTCAACCTGAATTGGTTTTCCTATTCTTAAAAACTGGAGGAGATAGGAGCTGAGGAGTGAAGAGAGAGGACACCCGCAAGTGGCTTTTGTGAGAAAGC-----AGAAG--TAATCGAAAC--CTGGTCTCTGCACCTTGAGacttgataatttaaaaatcacatccaAATTCTGTAACAGCATTCTGAC--acaggtacttttttttttctttctccaaaataattatatgctttgttttcttctcagcTATGATGCCCTGACAGGAGAATCCTACTTTTGCAACATAATTAAGCTTTTCCTACCCTCAAGCATGGACCGTCATCAGTACAGTTTCATATT-GCTTATTGTTCGGTATTTTGTTTCACAAAAGC-----CCATGGTTTTTATTTGTCAGCATGTTTATATGCCCATGCAGACACAATAACCTGATTTAGGGTTTCCATgacaagtt-gggaaaagaaactagaaataatttt-acGCTGCTCCTAAATCAGAATGTGGGGTTATGATCTGTTAACATCTTTGATTGCACAGTGTTTGTTCACCTTTAGAAATGAAACGTAAGTTGCCTGATTTTCCTGTACACTAACTTTGA-GTAGAAGTGAGACTCAAT----GGCTATATGTGCACATTACATTCC----------------TTATCTCCCATCATCCTTT---TGTCCTTATGACCCAAACTATAACAATACCGAAAAGAAGTCAGCGTGTAATTAGT-TGGGTATATTTAAAACCGATGGCATCTTGGCACACGCTGGGAACAGAGAGTGATCCACAGTATTGTGGCAAAGTGCATGCCAAGTGGAACAGGCCCTTTTCGTGTCCCCCTTTTAAGTGCAACATTCTTGACTTTGTA--CACAGCACTACTT-------------------------------------------------------------GAGGAACTGAAAACCACAGATCTCCTCCTGATATGATGACTATTGACTAAAGTAGGTGTGTTGGTTAACTCTGGCCGGTGTACGACTTACATTGCTAAAGactgttttatttctgaaaatcaaTTTT------------------GATTCAATTTGGAGCTGCCATGTTACAGAGGAGAACA

a score=19132
s chr3           156632284 1076 + 160039680 TCCAAAAGCAAAGTGATG-----GATGCCTGGAGTTAGTTAATTAAAATTCGGTATTGAATATTTCCACTTGGTGACTGTCAA-AGAGAATGAATGAAGCTACTGTAAAGAGTTTCCTGGTAAGAGAAATTTAATAACAAAAATAGAATCTCATATACTAATAATTGGTTCCTATTTTTAACACTAGCATGAT-GAAATTGATTTGAAGGTCAATTTGCATGTATTTG--TATTAGCTTACCACTTTATGGGAAAGAGCAACAAAACACTGGGTCTCAGT-------------------AGTGTAGTTCTCTGTGTTTTCTTCATCTGCATATGGCCCAGGAATATCACCCAGATTTTCAG-TACTTTTAGCTGCATAGAGAGTAAGCAATGGTCTAGAATATTCTACTGAAATGGAAATTTGATGCTGGCTAAGTTTGTTGATTAGTTATTTCCAATTACATGTAAGGATGTTTTTG-TGTGTATGCCGCTTTTATACAGCACACAGG--AACTGAAAAACAGTCATTAAAATTTTAATTTCATTCCCAATTTTTAAAATGTCTCCCGGTAGGACAATGTTTTATTGTCTCAATTTGCCAGAAATCCTTCTCTTGTAGTTACAGTCCTGCCATTTCCTCTCTCATGCTGAT--CTCTCCTGAATACAGAATTA------TCTTCATCTTGTTCACAAATGTGCATA--------TTCGGGATTTTAGCATGTGTTAAGATAAAACTA---AGGCTCATACCTTAAAC----ATATCATTATTAAAAATCCCCTGTG------------------------GCTTAGCTTACTGCCTGGGGACCTTTGTTCTTCACAGGCTGAGTTGTTCCTTCCAGTATTCAACT-AAAGTGTTTGATGGGCAG-ATGAGGAGGGGCTGAGTCAGGCAGGGACACGGGGAAAGCACTAATTTAC--------CCAGCGCTAATG--TCTGAAATGCAACTGCTGTCAGAATCCTTT-------AAATTAAATCACAACCAC----------ACAACAGCAAGAGGAACAGCAAC-TCATGTTGGGTTTTAGGACAGAGGGTGTAGCACCTTGTAA---TTTAATG-CTACATATGAGATGTGATATCACAC-AGTGTCAATGGAAACTGTCAATCACCCTTTGTTCTATTTCTGTTTCC
s HiC_scaffold_1 143801361 1165 + 233722169 TCCCAGAGCAAAAAGGTGCCTCTGGTGCCT-----CTGTGGATTAATACGACATATCTAACCGTTCCACTTTGTAGCAGTCAGTACTGCACTAATGCAAATGCTCTAAACACAATTCAggtgtttgtttttctataatGAA----GAAAATGGTTTGCTAATATCTGGGTACTATTTT-ATCACTATCAtgattaaaattcatttaagCATTTATTTCCTTGTGTCTGGGTATCAA---ATCatatttggggaagaaacaaTAAAGCATTGAATTTTAGTGGTCCATAGAAACTTACATAGTGTACCTTTTTGCACTTTGATCTATTTCCGAAGACctgaatatttcaataaaattttcagGTACTTTTGAC--CACACTGTCTCAGcaatatttca-----ttctcttgaaataGAAATTTGATGCTACCTCACTTCTCTGATTAATTGTCCCAAATTATCTGTTACCTTGTCCCAAATCTACTTGCCACTTTTATGTGGCACACAGGGAAATGAGAAAAtggttattaaaattttaatttcattctcaATTATTAAAATGACTTCTTGTGGGAAGATGTTTTATTATCACAATTTGCCAGAAATCCTTTCATTATAGTTACACATATGCCGTTTTGTCTCTTGCCATGATTATTTTTCTAAgtacaaaattacatttttcccAATCACTTTCACAAAGGtgcctgtattttttttcagCATTTGAGAATGTGTggagagaaaattaaataaattcaaatttaaaactaATATAGTACTATGAAGAATTTCCTGTGGTTCTCTTCAGTCTTCTCCCAAACGCTGCGTTTTATGTCATAAGACGCTGATTGT--AAAGATTGTGTATTGCCTAAAAATACATAAGTGAAACTATTGGAAAAGAAGCAAGAGAAGGAAGTGGATCAAACAGAGG-AAGTAGAAAGTACTCAAGGACTGAAAGAATCAGCTAAGATGCTTTTGGGTTGCTTCTTCTGTGTAATAGCTCTGTTTGCCAGTTTACATCAGCGCTATGGGAACATCAACAACCATAAGGAAATCAGAAGCACCATGGCACATTCTGGGGTACA--ACATAGCACTCTTTCCACTTTTAATACCCACATAAAGCAAGCAATGTTTTACAAGTATCGATGGAAAGTATCAATCATCCCTAAATCTACTTGTATTTCC

a score=45130
s chr3           156638658 1206 + 160039680 GAAGCCATCCCATCATGCAA-GGTGGAGTCTCTAAATGTTTGTGAAGATCTCAATGAGATGAGACCTGTA------------------TGTAGGTCAGAAGGACCTGGAGAAAGTTCACACTGCTCGCCTCTGGCAGCGCCTCATCTGATGTAACAGCAGCAATAGGTGGAATGTCTGAAGCTTAATTAGTATTTTAGTTTCCTACAAGAAATATTATTCTCCTTACTGAATCACTGCTAGGAA-ATGTCTCTTGGAGACATATGCGTATGCCCTCCTAGACTGTAATTTACATTTTTTAAAATTTGTAATTTGCAATTATCACTATCATTACCTTTTATTTGGGGAGGTATACTGAATCAGTTCTCTTAAAGTTTTGAGAAGGAAAAAAATCCATATTTTGTTATGCTTTTCTTA-AGCATATGATACTGAGATGTGTTTCAGTCTGCTCTTTCACTGTCTGTC-------TGCTCTTTCACAG---CAGATGAATTATTCTTTGTTTCCTGAGTA---CATCTTTGCCACCACTGGTGGGAGTCTCTTATGCGACT-------TCTACAATCTTGGTTTAGAAAATTAAAGAAACTCTGTGCTGTGCGGCTGCAGC-CATTCAGGGCTAATACATCTTGTTGCGCGTGACTGAGGACAAGTGCCCTCCAGATTAAATTTTTCTGCTCAGCACCCAGCATTTTCATAAAATATAGTCCTCACACAGCTCCACAAATATCCCAAGCATGTGGTTTAATTTAAACCAACATGCTTGAGTCACCCATTTAAATAAAATATCTGTAGTGCTCCAAAACCATTTTATAAATGCACCTTCTCAAAATAAAACAAGCAAACTCTATCATTTCAAGTGTCATAAAGTCATATCTGCACTGACTGATAAGCAGAGCAATCTTCACGGAGGATTTCCCAAGAAACCACAGGGCTGGATTGTGGTTCCTGACAATTGGC-------AGAGAAGGAGAGCCT--CTGGCCTGTGTCACCAGTTAGT--GTGGGGTTGCCTGGGGTCTCCTGATGCCCCGTCTCCCA-TGCCAAGGCCGTCTGAGATGCAAGATATGAAAAAGGCAAAAAGTTCCTTTCTCTAGTGTTATTTT----------------------------------GTTTAAAGGTGGCCTTCTCATCTCTTTGTGAAAGAAAATTCTTTATAAAATGATCATCTGAATGTGA-GTCAGAATGTAATCAGAAGAAAAGAGGATGCTAGAATGTATAAAGTCAACCCCCTTTAGAGAGGTTACCTGT
s HiC_scaffold_1 143804544 1247 + 233722169 gaaaccaTTCTGCTAATCAATGGCATAGTccccaaatat----aaaaaaatggaCATGATAAGCCCTGTAATTTGCAAATCATATCCTGGtaggacaaaataaaatctaggaAAACCACACCATTTTAATGTGGTAATATCCAATTTGA-ATAATAGAGGTAATACATGCAATATCTTAAGCTTAATTAGTATTTTAGTTTCCTAAGTGAAATATTATTCTTCTTACTGAATCATTGCAAAGAATACATCTCATAGAGACATATGCTTATGCCCTCCTAGActgtaatttccattttt-aatttttgtaatttgcACTGAGTACTATCATTACCTTTTATTTGGGGTGGTATACTAAATCAGTActgttaaaattttaagaa-----aaaaaccatattttgtaatatttttcctgGAGTATATTATACTGCGATGTGTTTTA-------------CTGCCTGCCAAAACTGCTCTCTTTTACAGGAGAAGATAAATTGTCCTTTATCTC-TGAGCAGAGCCTCTTTGCCATAGCCGGTGGGATTCA---ATACCACTGATTCTTTTTACAATCTTGgtttagaaaattaaagaaact-gGAGTGGCACCGCTGCAAAGCATTCATGGCTAATACATCTTGTCGCGCATGACTGAGGACAAGTGCCCTCCAGATTAAATTCTGCCGCTCTGCACCCtgcattttcataaaatatagtaCTTACACAGCTCCATGAATATCCTAAGCATGTGGTTTAATTTAAACTAACATGCTTGAATCAcccatttaaataaaatgtttgtaaTGTTCCAAAACTCTTTTATAAATGTaccttcttaaaataaaacaagcaaagattATAATTTGAAGTGTCAGAAAATGAGATCTAGGCTCAGAGATCAGCACAGAGCTCTTCAGGGAGGATTACCTGAGCTACTTTGGAACTAGATACTGGTTTCTGAATATTGATTCATGAGAGGGGAAAAAGGCATTGCCAGCTCATGCTACAAGTCAGTAAGTTCGGCACACTCCAGCCT--TGACCCACAGTGCCCCACTGCCGAAGCAGCCACAG-TGT-GGTTATCCAAAGG---AAAAGTCACCTTCT-TGGTGATGCTCTATTTGGGACACGCCCTACCCCGCTTGCAATCATAGTTCAAAGGTAGCCTTTGATAGgtgctctgaaaaaaaaatc---ataaaatactaA----GATGTGATTTCAGGA--CAATCAGGGGTAAAAGGCATTCTAGAATGGATCAAAACAGTCCCAGT--AAGAAGATATCTGT

a score=14901
s chr3           156645495 609 + 160039680 CTGAAAGTTACAATTAATGTGTGGTACATACTTCA---TAAAATGCCCTAATATGTGATATTTAAAATTTCATTTAAAATGATATCTAGAGGGCTGTAACATATCCAAGTCCAACGTTGAACAATTATG-ATTTATTCTACATCAATGAAAATGTATGTAGCATTTT--ATCTGACCAATGATATAAACCATTATGTATTTTCTCTTTCTGTTTATAATTTCTTTGCTT----TGTGTTCAAGAAGGCAGCATAAATGCTGGTCTTTGTTGCCTATAAGT-------AAAGCTGAATAGTGGATTGAGATGCACATAGATAGATCTTAGAGAATAATTCT-ACCAGATATAGTCTTTCTTCTCAGGGTTTGACCTAATAAAATACTGGTTATATCTTCATATTTTTCATCTTGT--ATCTCCCCAATGTCATTGTCCTGAAATAGGAAATATCGTTTTAGTGTTAGAGAATGCTATGTAATGCATGGAAACATTCCATCGAATTCCCTTTCCATCTGTGCAGTTTTCTCTTCCCCTGACTTAGTGCTCTGCCATT----CACCTT-----GGGACGTCAGCC--TGTTGTTTCTCAATGTTCAGAGACATA-CATGTCATTGCTACATTTATGATGTCAGT
s HiC_scaffold_1 143809495 616 + 233722169 CTAAAGCCTGCGATTAGTATTTAGAACACATTTTAATCTAAAACCTCATTACATGTGATCTTTGTA-TAACACATTAAATCAGATCC-GAGGAATTAAACGTATTCAAGTCCAA-ACAAAGCATTCATTTGTTTCCTCTGTATTAACAAAAGTGTGTGTGGGATGTTTAATGTGACCACTGATAGAAaggatt----------------tgtttttaattacCTCAGTTCTATTAGATGCAGGAAGACATTATGAATGTAGGGTTTTGTTACTTCTAAATTTATTATACAGCGGAGCAACATATTAGGAAACATGCCAATAGTCACTTGTGAATAACTCCCACCCCTTTTGGCTTTTTATGCTACGGCCTGACTTCATAAAATATtagttgtattttaat-tttttcatctaGTCTGTCTCCCCTATGTTGATGACCTCAAGTAG-AGACATGATTTTAGTGGTAGAAAACCTTATTTAATGCATGGAAACATTTCAATGAATTCCATTTCCGCTTGTGCTGTTTT---TTCCCCT-ACTTATCGCACAGCCCTTCTTCCACTCTTGTGGGGAAAGGCAGCCCTTATTGTTTCTCAATTTCCAGACCCTGAGAAAGTAATTGCAGAGTTTATGAAGTCAGT

a score=23564
s chr3           156648080 1469 + 160039680 ATTCATTTCTTAT---TCTGAAAAAGGAAACTCAGGCATAAGAGAATTTAAGGTCTCCCATAGTCTTCAAGAAATCTGTAC--CTGGCTGAAAACATTGCAAGCTGCAACTTGAGCT-----TAAACACACCATATAAGTAGCATATGGCATGGGAGAAAGGAATAATCAAGCATTTTTATTGCAGCATAGGAAAGG--CTGAGAAAATGGGAATATTTACACATGCAATGCCTGAACC-TCCAGGAAATTATCTACCTAATACATTTCCACTACAC-------TCTTTCAT-------------GCATC---TGAAAATTTTAC-CATAGGATACATCTGGAAGGAAAATAAGAAA-TGGAGCCAA-AGGTCTAATGAGCAAGTAATGCTGGGACCTTAGAATTCTTTTAGCCTT-GGGAAAAGACAGGAGCTA--ACTCTGAGAGACACGGTCTA---------AGCTGTAAGAGGCTTCAAGCTTCTGC----------TGTCCCTATTCAGCCTGCTGGTTCATACAAACTGTCAAACAGAATCAGTAGAGGACA-GGGAAGGGCCCTGAC-AGATGCCTCTGAGA--AGAGCTAATTGGGATTCGGTCACCCAATGGGTGCCTGAGACACAGAGGAGAAGC-AAGCAGTTAACAGAATAACATGGCATTAGGAGTGACTCATGAAAGTCAGAGAAGACAATTGGGTAGCAGTGA-ACATTCGATATCTGTGG-TATTTTTAGTAAAATTATTTTGAGGGTAAAATTAAATGAGGATAAAACAAAAGGAGAGGTGATGGCCATTATTTCAAATACATA-GATAAATTGTCTTCT------GCAGTCCTTTTTCTCTaaacaaaacagaacaaaacaaaacaaaacaaaaaaaaaaaaacTGAGAAAACATGCAA-TCCAGATCCTTCATTTCCAGCCTTATTGTAT-AATTCTTTGCATAGCAGCTTTAAACTAATCTTCCT--------CTTTTGAAGAGGTATTAGCTAGCAGTATC---ATTAATTCGTAATATTCTGAGACCCTGGCAAGA---GAAATTCTTGAAGCTCATTATTAGGACCTGGAGAGGAATACG-----------------GCCTAA-----------------------------------------TGTTTGTGTGTCAAGTGGCTCTCACTCGCTGTGACACGCTGTTAAGTTGTAAAAATAA-CCCAGGAATGCACTGAAATTTTTAGAAAGCTTGATGCCCCTCCCCCCAAAATAAACCAGCCGTAAAAAATACATTTAAATGCTTTG-TTTTGTTTTTCTAGGATGTCAGGATATCAATGCTTTAGGAAGAGACAGAGGTAAACAGT---GAATTCAAAAGGGTTTTAAAGAAC------TATGAATTAGGTCTACTCCAGATAAAC-------------ACTAAAATAATGAAATTAAACATGAAGTGAATATACACAGTGATGCTCAATGCAGC--ATTAGAATAATTAAATACAAG-GATATAAAATGAAAGTCCAGTTCTAGGTTAGATCAAAGTGTGATGTTTGTACTGCACAGCAGAGATGAGCATCCTGAGTTGATACTGAGCTTCAGAGAGAGACACCAGTTTCCAGTAAG
s HiC_scaffold_1 143813232 1544 + 233722169 ATGTACTTCTTTTGTGTATGGATGAGAAAACTAATGCACAG----ATTTAAATCCTTCTCCAGTCTTCAGGAA-TCCATAAGGCTGGTTGGATATGCTTCAAA----AACATAAGATCGACATAAACTAATCACACAAAGAGTATGTGATTTAGGAAAAAGGAATTTTCAAAAATTGGTATTTCAGCCTAGAAAAAAAtttgacaaaa---gaata-----aaatgcaatatTCAAACCCTTCAGTAAATCGTACAGCTTGCATTTTTACACCATCCCTCGGTCTATTTCATCAGGTGACCGAGTGAATCCTATGAAGATTTTTCATGTAGAATACATCCGGCAGGATAATGAAAAACTGGAACCAACACCTCTAATAAGCAGATAGTTTTTAGAGCTGGGGATTCTTTTAaccccaggggaaaaggaagtgtTACAGTGTTGCTAGACACAATCTGTGCGTGAAGAACTGTAAGAGACCTCAAGTCTCTGTGAGTCATTGGTGTCCTGATTTAGCTTACTTGTTCATGCAAGCTGTCAAGGGGAATCAGTAGAGGGCACAGGAAGGGCTGTGACAAGATGCCACTGAGAAGAGAGTTAATTGGGATGCAGCGAGCTGATGGATGTGTGAGAGTCAGAGAAGAGGTGGACCAGTTAATGGAATATGCTGTCTGTAGGGAATTACCTTAAAAGTCAAATAATACAGTAGCCTCTTGGTCACAAATTGAACACTTATGATTCTTTTCAATGCAATGAATT-----GTTCAAGAAaat-atgataaagaaaa--------taatggtCATTATTTCAATTGCAtgtgatgatttttttccttgactaTGAATCCCTCTTCATTAaat--gactggaaaaaaaaaaaaaaaggaaagaaa-----------aaaatgtgcaattTCACTTCCTCGGCTTCCCGTTTTCCTGTGTCAATTCTTTCTACCTGGgcttttgaatgatttttctgtttaaaaattttggaaaagta--GGTTAGCACCATCCTTCTTAATTTTTGAGGTTGCAAGGTTCTAGAAAGGTATGACTTTCTCAAAGCCCGTGGTTAGGGGTTGAAAGGAAGCAAGCGATACTTCATCACAGCGACTAATTCCACAGTTCAGACAGAGACTGCATTGTTCCTGCATGCACTGTCTGCGTGGCAGGTGGGCC---CTCGC--------------GATTTGTTAAAATAATCTCAGG---GTATTGAAAGTTTTGGAAGGCTTGG----------ACAAAAATGTATTCCCTGC---AGTTACATTTAAATagagtgcttttctttttctagaaggtcAGAATCTCAGCAtttcaggaaggaaaagaa--aaatggtacCAATCTTTGCAAGCTTTTTGATTACATCagataaacatttaaattacatgagataaattttattaaaagtaacTCAGAACATGGAATCAGATATGagtgataattataaaatattgctcAACACTGCcagttataataataaaaaattagaaagatgaAATGAATGTCCCACAATAAG--------------------CACACTGCCCCACTGACATGGAGTTCTCTTGTTGGATCTGAAGCTCAGCGGGAGACCCTGGACTCCAGGGAG

a score=24719
s chr3           156656041 1209 + 160039680 AACTCTCTTCCACTGAACAGTTGTGGAA------------GTGTTTAATTTGTCTT-CCGCTAGCCTCTAATTTGTCAGTGAACCTTTAACTGACATTTGCTAAAGTTCACTAAATTTGGAAGCACTTCTCCAGGACTGAGAGGCATCAGGCATGATTTTATGTTAAGAACAGTGG---GGAAAGGGAGC--TATCTGGATTTGTCCATTCAGTGGAGAGCTGGCC------------TCATACCGAG-CCTTGCAGGAGGCAAAGCTGTATTTGCATAAGGGTTACCACTGGAGAATTTATACTTCATTAACCTGTTGAATCTTGGAAAAGGTCAGAGGCAGAAATAATATTAAAAACCATA---AAGGATTCAGTGGAGATAATATGTTTAATTCCTAAATTATGAAATTATATAGTAAGTTCAGACCCGAAGCATAGT------GGAGATGAGATCAATTTAAA--AACATTGAAAATTACTCGAAGCAGTATATGTATGATCAAATTAGTACACAATACAATAAATTGTTAATT---AATCTTTTAAA----AATAAATCTA---TGGTTATATTGAACACGATGTACAGACAGACACACCTTGATGGCTTTCAGGAAAAT--AGTCTTTTAAGATGGTGTGAAGATGT--GAATGAGACTAAAATGCCTG--TTACATACATCACCTCCCGAAGATAG--ATGAGAATTGTACAGTTC-------ATATCCCCTCTCGTTAATGAGCTTTGAATATGCAAGGCAATCTAACTCCTTGCCACTTCT--TACTAATTCCCTCATTTGTTTGACTGAGGGAAGTAAGGTTAATAGTTTTTCTTACAATAGGGCTTTTAAATTTATTTTTATGTCCGTTCTGCTCCCTCCCTCATCTCC------TTTTAGATTCATGCTAATTTCTCTCGTATTTGCATTTGATAATGTTTCTAAAAATCTA--AAAACTTTACAAGATCGACAGATCTTCTAAGTCTTCTAACGTTCTTGGCTTTGCATCACTCTCCCTATGGGCAGTGAGATTAGTCAGTGTTCTGAAGAGATCTGAGGTCTAGAGAGATGTGCACCCCTTCCA-TCATCTGACATATGTTGTCAATTATTCTACCCAAGTCTGTTTGAGCTTC---------------------------AGAAACTGACAG---CCAGTGTCTATTCTATCTTATATGCTTTGTGGGTACA---TCGACACTGTGTGTTCAAACAGGAAAAAAAAAAAAGGAGAAAGAAATCAAAGAAGCTAACGTT-CTTTTATTTCTCCAGTCTGCTTCCAAG
s HiC_scaffold_1 143822332 1237 + 233722169 AACTCTCTCTCAGTCACTGTCTATGGAACATTTTTGTGTTGTCTTTCATTTGTCTTTCCACTCACCTCTAATTTGTCAGCGGACCTTTAACTGACATTTGTTAAAGTTCACAAAATTGGGAAGATTTTCTCAAGGATTAAGAAGTGTCAGgaataattttatgttaaaaat-gtgGCATAGGCAGGAAGCCTCATCAGCATTTATCCATTTAATGGACAGTTTGGCATAAATTCTAGATCACATAAAGACTTTGCAAGAAAAAAGGCATTATTTGCATAAAGGTAATCATTAgagaatttatatttcattaaccTGTTGAGTCTT-GAAAAGGTCAGAGgcagaaataatattaaaaatgataaagaagaatTCAGTAGAGACAATATACTTGATtcctaaattataaaattacatgcTAAATCCAGACCTGAGGCAAAATATCTTAGAATAGATAATTAGTTTAGAAtaagatttaaaattctttagaaTGATATGTCCccatttaaattaatatattatgtaattaactgtttattaaaaatatttgaagcctCAAAAAACTTAATTTGGCAGTGTTTCATAGAATGTGTTGAAAGTTGTA-CTAggtaatttttagaaaaataaaatttctgaaggTGAATTGGAAAtataagaatgatttttaaagatcTGATTTACATGTAATGTTTCTCTATTATAGACATGAGAAGAATTTGATTCAATACTAACATCCTTTCTTGATAAggagc-taatatatatatatatatatatttcctttaaacttttaaaattaatttttctaact-ttttattgAAGAGAATGAACT---TAGATTCATCTATGACAG-------ATAATaactcatat-------------cctgtcttataTCCAATTATTGTTATGTTCACTCTATTTCAGCTACTA--TGCAACTGATAGAATTTCCAAAACTTTATTAAAACTT----------------------------------------GCATTG----ACTTTCCTACTATACAGTATAGTTTGTAATTTTTCTGCACATGACTGAGTTCTTG-GAGTTCAGTGTTCTCTTTATTTATGGGAAATATGTTCCCATAAATTCTCCCTAAATCAGTGTAAATTTTTTGTAGCCACACtcttcaggtttaaaaaaaaagtaaaaaaattcattttccattCAAAAT----TGCTATGTGTGTTTATACTTGAACATATTTgttcattc-----aaaaagaaaaggagtAAACAAAACAAGAGACTGACTTTAATTTAATCTAAATGCTTTGCCTCCAAG

a score=37209
s chr3           156663250 2126 + 160039680 ATATCATTGGAAATTGAATTACTTCAAAGTTCAAAATCAAGACTCTA---ATAGTTAGATTATCTACCTAATGACTGCTGCATCTGAGATCTGAATGCTGTTGAAGTGAGCATCTTTATTTAAAAACATTTTAATCCAGTGTTCTATACAAATCCAACCTCACATTGTAAATGCTTCATATTTGCACACTGAA---TTTGTACTGAGAATGTAAACTAATAAAACTTCAGAGATAGTTATAGTTTTAGACACTTTACAGTTTAATTTGCCTTCTGACCTTTGCACTTCAGTGAATTTAAAGGTGTTTTGATATAATAGTCTATTGAGAAGAGTCCTCATCACCAATGGCCTGATCTTTTTAGTGTTATTATTGTCCACACACGGACACCTGCTCCTTCCATGATGGTAGCAGGTGTGATATTTGGAAGCCGGAATGAAATCGTGATTTCTTCACACCCAGGACTACTGTGAGAACAGCTCAGCCAGTGTCTGAGAGCCCCACTTGTCTTTCAGAGGA----GAAATGTGGCTTGCAGAAACTTTGGACACTTGTTCAAAAATCCACCACAAACATCAAGATAAGCTGTCaaaatttaaa---aaaaaaataa-----ttaaaaaaattCAATTCAAATATGGT--------------TCAAAAGT----------------ACTTCATGTTAGATTCTAGATATTGATGCAGGTCTAATA--TTCCGGGGATGTAACTG-ATCTATGTATTTAATATAGCTATTTTAATTCTAAAACTATATTCAGAAACCAAAGATACAAATCCAG----------------ACAAGGCTTATTTCTTCATATAT--------TCCTTTAAC---TTTGGCCCCAAATCGTGTCTCACCAAAACAATAGAAAGTTTTTAAAAAATAAATACA-ACAGGAAATAAATTATATTTAATCAGAATTACATGCAATAAGAGATTACAAAATTATATTCAACACATAGGAATT-ATATTCAAATAAAGTATCAGGGAGAGAAAATGAAAAAGTACAGCCTTTGAATTCTTACATTGTATCTTAACTTGTGGACACCAAGT-ATCTAGCTTTCAAAGAACAGATTTGTGTCTCTGTCAGGTTAATGCTCAGTG-------GCAGCCAACAGTTGTCTTCCTTGTTGAAGTTCTGTGGTCCTGGATACAATCGACACCTGGAATTGTCCCAGAAGTGGAT-GGGAAACTCTTGTGTTGTTCAGAATCCAGTTACCCATGTACTAACAGACGTGAAGCCAGTATCACTCCCATGATCCT--TGCACCTGCTCTATCTCAGCATGATGCTCAAAGTGTTGTGGCTCATCAACCAA---------GGCTGACCTTA--ATTTTCTTAGAGCTGGAGTTCCTCTATTTCACATGAAGGATAGA----CCTGGAAAACAGAAAGGGGACTCATACAGACTTCAG--AATCTTAAGATCTCTGAATCTTTGCCAGAAATATGAAGTTACAGT-TGAGCCTTCAACTTAGTAGATTTTTACACCAACTACTGAAATATGAGGGCAATG--GCTGTGCACAAGAGCACAA-GAGGTGATTTTGTCTAACTTTTAGGAGCTGTTTGGGAACCCTTAAGCTCTGTTTAAATTACAAAGC--AGGTTTTCTCCACCTGCATATGCACCTGA--TAGTTTTCAGCCCTGTGAACACCTTACACCTGTGTTTCATTTTACTGAAGGTTTGTTTTATCCTATTGGGTTAGATTTCCGTAGGACTCAACTACAAAGTTGAATTCTCTGACAGTTCA-AGCAGTAACTGT-----ACTTAAAAGTCAATAGTATCTTTATTGTGATAGCCATTGTCACATTTTC---CTAGAGCCAAAGTGTTCACCGTGAGACAGTCATCGGGAGCACATATTA-------------GCTTTCTACTGCCCATTGTCAAACAGTGTCTCA--ATGTATTGTACAAATAGTTTTTCAATCTGGAATGTGATAACATGGATACTGTACAGTCTTC-CTTTTTGTTTTGTGTTTTTATTTTAGAGATGTCTCTCTTAGAGTTGTGAATGCCTTATTTGATGCTGTGCCCCAGAACTTTAGTAGCAAATGTATTCG-------CACAGTAAGGGCTGAAGGAACGTGATGGCAAGC----ATCATCCA-GTAGATCAAGCATACATGGACTGGATCACTGCTACATACCATGTACAAAATACAAAAGCTATACCTGGAACCAGCACCTTCAACTGCATCACAGC
s HiC_scaffold_1 143830341 2109 + 233722169 atatatatgataattagTTTATTTTAAGGTCCAAATTTAGATTTCAATAAATAATTAGAATATTT---------CTGCTGCCTCTTGTCTTTG--TACTATAAAagtatactattttattttaaaatag-----------gttttatttagagtca-----------taaaggat--aaacttcCTCACCAAAAAATTTGTGAGGGGAAAGAGAACTAATGAGACTATTGAGACATTT------TtagactttttaaagtttaatttgcCTTCCCACCTGGGCACTTTGGGggatttaaaagtattttcatgtAATATTCCGGTGAGAAAAGTCATCACCAC--ACGGTCTGTTCTTTTTAGTGCTAATATTGTTCACGCATCAACACCTGCTTCTTTCGAGATGGTAGCAGCTGTTCGAGTTGGAAAAAGGAATGAAACCTTGATGGTTTTACACTCAGTACTACCA-GTAATGAGCTAAACTGGCTTCCGAAAATCCCGTTTATCTTTGGGAGGAAAGTGAGACATCGCTTGCAAAACTTTTTGACTTTTGT--GAAAAACCAATAC--ACATCACAACAAGTTTTCAGaagtaaaaactaaataaataaaccaccTAAAACTACTAAATTGAGCTATAGTATCTAAATTTTCTGTCAAAAATCTGGAAATATTTGGGGATGTTATGTCTTATTTTAGATCAGTCTGTAAACATTATGgttgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtggttttttttttaacctcag---ttAATTCAAATATGCAGAATGTAAACCCCAAACTGTTCTGTCACCCATTAcgtttatttattcttatttctttcatcTCGTTTAACTTTTTTGACCT--AATCATTCTTCTCTCCAGTATTTAAAAGTGCTTAGAAAATAATTACAGgggggaaataaagtatttttaaataaaat---gtgtagCATCAGA-CACAAGG-------CAAAATGGAGTCACTAACACCTAGACAAAG-------------------------------TTTGCATGATTccatattatttaaatttgtggAGGTCAGACGATTTAACTCAGAAAGGATGGGAAGGCGGCCCTGCTTG--TAATATTTACTATTGGAACTTAGCAAGAAATTATCTTCCTTACTGAAGTTCTGTAATACTTTAT---------ACCTGGTGTTGTCCTTGAAGACCACAGGGAGATTTTTGTGTTGTGCGGAATTCAGTGACCCATTTACTTACAAATGTGAACCTAATATTGCACCTG-GACCCTGCTGTGCCTGTTTTACCTCTGAGTGATATTCAAGGTGTTGTGTTTAATCAACCAAGACCTATATGGTTTACCTTATCGTTTTCTTAGAGATAAgggtttcttttcacttatgAAGGATAAAGGTTACAGGAAA--AGCAAGGAGACTATTACAGACTCTTGCTAACCTCAAATTCTGAGGTTCTCTAtcagaaataaatgtttacagtCTCAACTATAACCTAAGCAGATTTTTAAACCAAA----GCACCCAGGGGGTCTTGTAGATATCTACAAGCACGTAAGGAAATGATTATGTCTAACCTTTAGTGACAG-ATAGGATCTATTACACTCATTCCACACTATGTAGCCAAGGTATTCACCACCTGCAGCCTCAGCAGATGTAGTTTTCAGTCTTACAAGTTACCTACAcctgtgtttgattttatttcaggtTCAGATTAGCATGTTAAATTAGACTTCCTTATGTTTTATC--------TGAATTCTTATATAGTGCATACCATCAActattcatgatttaaaaatcagtaatgtcttcattttgtttttaattactgcatttttaaattcaatCAAACTAATTAAGGGTGAGATACTTGATCGATTAATGTATTATTATAAAACACAcgttttctatttttcattttcatacaaTAGCGCAGTGTGTATTGCATGGATGTTTTTCCAGTTTGGAATGTGGTGACCCAGA----ACAAGGCCTTCAATTTCAGTTCTG--------------------------TAGAGGTATATATGCC------GGTTTTGTG--TTAAGATTTCAGAAGCAGATTCATCTGGGAGgaacaaagaagagagaaagaaaaggtagCAGAAGATTGTAGTGATCCGTGAATGTGAGGGGGAGGGGGGCTGGCTTGCCATT--CTACCACGTGGAAAGTAC--------TGTCCAGCATTAGCTTATTCAGCTGCATCACAGC

a score=6540
s chr3           156670756 297 + 160039680 TTATCCTTACTTGTAATATAGTTTATATTTCTCACCATGAACAAATAATAGCAAA--CTCATAGTCTTTCCTCTGCAAGAAGCTCTGTTTGAA-TCTTTTCTTTTCCAACGTGG-TCTGCGACATTCAT-CTCAAGGTTAATTTATTAATGCATTAATGTACTCAATGACCTGGAGACACCTGCTAACTGTTAAAGCAGCAGGGCTCGTATCCTCCCTGTGG-----------AGAATTGTAATCCTAAAG-----GTCCTTTCAGGATGTGA--CTCCAATGTTACTGCAAGTGTCCGTTGTCACTTTGAAAGTTCAGA
s HiC_scaffold_1 143836653 319 + 233722169 TTATCATCACATAGtgtatgttttatgtttattattatattcAAACAAGA-CAGTTTCTCAGAGCCATTCTTATAAAATGGTCTCATTTTAAAATCTATCCTGTTCAAACATGGCTAGGTGACTTCCATGCTGAAGGACAATTTATTAATGTATTAATGTAACCAGTGACCTGTATTCATCTAGCACCTGCTAAAGCTGCAGGACTCAGACTTGTCCTGAGAGTCCTGTTCATAAAATATTgatctaaaaatatatatgatctTAGGATCTGACTCTCCGATATCACTGTAAAGCATAATGTACACTTTGAATACACAGA

a score=16330
s chr3           156673938 893 + 160039680 CTAGTTCTGTTTTCCAGGATGTAAATAATAGCCAAATAT-GCCCCAGATGACACTATTCTAAACTTTAAGATTT-TAAAATAAACACTTTATTCTGATGCCT-ATCTTTGGCATTCGTTAAGCTTTTGGTTA-----CCTCTCTTGGTTTCACTTATTAATCTCCAAATAGCT-TTATTAATATCT---TCACATTTCTTTCAGCTCACTCTT------------TTTTCAGTCCTT----------AAGTTTCGCTTCCCTGATAGTTCCTCGGC-TCTGCATGGTTAATGGGAAATCTCAACCAAGTTTCACCTCTTATTATAAATTCTTTTAAAAAGAAGTGATTAATGGCTCTTCCTTCCAAGTCAATGTGTGTCAGGCGCAAATTCATAGTGCTCTTGTAGCTTGAAAGCCTCTGGCTCC-TGACAGCTGTCAGGGTCAGTGGTGACGCAGATGCATACTAAAGAGCGACAA--AGGAGAGGCGGCAGAAGTCGG-AAAGTTTGTCAGTGGAAGACACTCAACCTGGAACGTTAATGCCCACAAAAATGAACTGCTGCTGGGTAAATCTCAAGACATACTGAGCAGTGG-GTGTCAAGAGGATCACACAGAG-ATACTTGGAGGCTTTTAGAGAGTAGTGCTGACACACAGACCACCTGCTGGTCTCACAGTGATTATATAAGGGC---------------------TGAACCTTGT-----TAGCTT-----------GGGATAGTTGATTCACATTTCCCTC--------AGAAGCTTTTATGGAAAAATATACTATTTCTTCATGTCAATTTTAAATTTCAATAG-----------------TTCTCA--AATGACCATTCTTTATGAA--GGACTCAGCTTTAAAAATGGCAATTTTGAAAATGCAGATTTT-TATTGCACAAATATGAGTT-CATATAATGCACACAAACACACT-CATGAGTGCATGCACATGCACacacatgaaaatacac
s HiC_scaffold_1 143840100 979 + 233722169 CCAATCTTTTCATTTATGAACTGACTAATAACCAAATGCCACCACAAATATCActattatgaaatttaaaatttgcaaGAGACATACTGTatcttaatgttttgtctttgacATGAGCTAGGGTTCTAGATAAACTCCCTAATTTGGTTT----TGtcaaatttcaaataattatCATTAATAGCTGCTTCAAATTTATTTCGattcctttttaaaagatgattataTTTACTCTTTGTAGAAGCAAAAATTCTTCTT-----ATATCTCTTTAAAATTCACAACCTTAAGGGGATATCACAGCCCAGTTTCCTTActtattatatattcttttttaaaacagtgatTAAGGACTCTCCAGTCCAAGTCAATGTATGTCAGTTATACATTTGCGATGTCTTTGGAGCTTGAAAGCCTTAGGTCCCATGACAGGTGTCAGGGATGGTGTTGATGCAAATTAAtattaaagaataataattttgaatGGCAGATGAAATCTGCAAAATCTCTCTGTCTGAGACACTCAGCTTTAGGACTTAACacccataaaaataaattaatg--ggcGAATTATCAGCTGGTTAAGAGCAGTGGTATGGGAAAGGAGTAACACAATGTGTAAT---AAGCTTATAGAAAATACATCTGATATTCAGGTCATCAGTTCAAATTGTAGTTATTATATAGGGATAGCAGGGGtcaattaaaaacattaactttgtagttatatatttatatataagaggaatatatagtttatatattcCTCATCCTTAGAAAAGTTTATATATTAAATTGTGTTTTTTCTTAATGTGAATTTTGAA-TTCAGTAGGAAATCATTTAGAAAATTTCCTGTCAATGGcaattattttttcagtgaaatCA----TATACATTTCAA---TGTGTATGTCAATTTGATTTTGCTTAACTATGAATTATGCATTGTGcatacaaaaaaaatacatgcatg--tgcacaaacacacacattatTGTACGC

a score=19224
s chr3           156679136 1132 + 160039680 AGGACCAGAATCACATTTTTTATGGTCATGTATTTTCATTTCTAAATGTCTGTGATAATCATTTAGAATTGCCTTTTGCTTAGAAAGAAATAAGAAATAG-------CACATCCTGACAGACTAGAAGCCTTTCTAATGAACCATTAAATTATAAAATCTAAGTACTAATTACGTCTTCAGACATGAGAGC-CCAAGCTGGATAGTGGCAAATCAGCATGAGTGAAAACTGTGGTTCATCCCATCCATGCTGCCCCGTATTGATGAATGGCCTCTTAAAGATTTATTTATATCACTTTTAATTTTGTGTCTATGTGGAGGAGAGAgtgtgtatatttgtgagtgcagtgcctgctgagaccagaagagggcgtcggatctcccggagctggagttacaggcagatgtacacttctgggtgggggtactggaaagtagactcaggtctcctgcaagatcagtaagcactcttgactgttgagtcatccttccagcccTGGGTTGCTACCTAACAGGGGCCTCTCTTCATCTGAATGTTCTGCTCATGTGCGTAATGCATTCCTTTGCTTTATTAGCAGCTGA-GTTTTTATTGTGGTGCTTTTAAT-TTCTGCTGTAAATTGTTAATTATATCCTTGATGGTTCT-AGTAAGCCTTCTATTAACTGTCCTTGTTTGACTTGCA-TTAGGGAGATTTACTTCTGCGGA---CCTAGCATGGTAGACAGTCATAAACCACACAGCACAGTGCATTGGAGAAACAGCTTGTGTGCTTTTGTGGCCTTGGCT---------------------CAAAGGGA----------------TATATGTGTTGTTGTATGCGGTAT-TTTACCATTATTTGGGTGAAGAC-------TTCAGCCAGTCCTTCTGGGGGAACTATGTTGCTTGAATTAAGCTGTCACACTTTGGCCCATATTCTTGTTAATGACTTAATAAAGTGAAGCTTAATAAAATGTACCAACAAATTGAAGGGCA--------TTAATGTATGATTGTAGTTTCAACTAAATTGAGCAACATACTCAATTTTTAATAAC--CCTTCCAGAAGTAGACCAGAATGTTTCATTCCATAAAGTTGCATAGAAGATCTTGT--TTATTGAGTGTGCGATTTTGATGCCTATTATTTTAATTTCCTTGTAAATTTCCATAGCATTCCAAGACAAG
s HiC_scaffold_1 143847322  981 + 233722169 AAGCCCAATCTCACATTTTTCAAGTccatatatctttattttcatgtgtCTCTGATCATCATTCAGAATTGCTTTCCGTTttgtcagaaataaaaaaaaaatatattcacacaCTGACAGAGTAGAA-CCTTCCTAACAAAGCATTAAATTATGAAATCTAAGTACCAATTACCTCCTTGGGTGAGAGGGCGTGGGGCTGG---------AGTCAGGAGCAGTAGAATGAATGATACA----------------------CGACGGGTCCCCTC------------------CACTTTCCACTGTGTGT--------------------------------------------------------------------TGTCCC-------------CAGACAGA--GACGCTTTG------------TGAAAAGCACAGTTACG-----------------------------CTGTTGGTTTAT--TTATAAT----GATTGC------------------------CTGGGTATAGTGTTCATGCAGttacttcattccttttctttattaGTCGCTGACTTTTTTATTACCAGGCTTTCCCTCTTTTGCTGTAAATTGTTAATTATTACCTTGATGGCACTGGGTAAAGTTTCTATtaactgtcattgtttgactcgCACTTATGGAGATTTACTTTTGCTAAACCTCTACCGTACTAGACAGTCGTAAACCACAAAGCATAATGCACTGGAGAAA-ACCCTGCCTGCCTCTGTGGCCTTGTCCAAGGGGCTGTTTCCAGGCTTGCAAAGGCACTCTTAATGAGGGGCCTGTATATTTTGCTAT-TGAGGTGCAATTGccatcattt---ttaaaacacatggtACCAGCCAAATCTT---AGAGAAATGCATCACTAGGATTAAGCTGTAACCTTTTAACCAATGTTATTACCACTGATTtcctaaaatcaaaattaatgaacGGTGCCAATGAATTGAGAGATACAACCACTTTAATGcagaa----aattttgattttactGAGTAAC--ACGTAGATTTTAGccacaaatttgaaaatatagttCAGGGTAATATATACCATCAAGTAACAT-----ACTTTATTCTTATTGAAAGTTTGCTttgtatatcttttattttaattcactggAATGAGTTCATGTCATATCAAGACTAG

a score=6475
s chr3           156681532 466 + 160039680 TCATACAAGCTGTCTGATGATATCCTTTGTATGTGTAGCCTCCCTAAAATAATCATGATATCAGTCT--TGATGTGAAAAATCACAATTTCACTAAGAAATCCT-AAGTATATATTTCAGTGAAGATAAATTGTTGAAAAATTCACGTGCTTCTCAAGGCAATTCATATATTTTATTCTGATAATTATT---GATCATGTATATGCTCAAAATTCAAA-TAAATTCCTC-----------AAAATGGGTTTTCTGTTTTAT------GAATATA-GGCTCTTGtat--aattaaaaattaaattaatttttttGAATGATTTGGGAATATATAATCACTACTAAATAG----GAAAAACCTATAGATAATTAT----ATTGTTACATTAATTTCGTTAAGATTTGTTTACAAATAATCACAGTACATCAGAAAGTTAAATAAATGAAGCACA--GTGATTAA---ACAGTATCTACCAAAGATTGTGTTGTTGCATAGCAATTATA
s HiC_scaffold_1 143851366 477 + 233722169 TCATATATTGTGACTGATGCTAGTCTATATAAGTCTATTCCCaccaaaataatcatttttttactttgatgaTG----GAGTCATAATCT---TCAGGAATGCTGAAATACATACTTCAATGAAGGCAAATAGTTTGTAAATTCACAAGCATTTAAAGGCAATTCACAAATTTTG--ATGATAATCATTTTGTATCATA---ATACTCTAATATCACCTTACATTTTTCTAGGTTACATTTAAATGAATTTACTTTTTAGTTGTATAAAATATGTGATTATTGTTTCAGATGAAAAAGTAAAGCATTATTTCTACAGAATTTGGAAATGTAAGGT--ATTTTGAATAgtctttaaaa----gtaaataattattgGCATAGTCAAATGAAATTTGC-----TTTAATTAAAAGGGACAATTTTATTCt----aattaaatagaataaatacaCTGTGACTAAAGCATACTGTATATaatcatttgtgttttt--ataataactata

a score=43986
s chr3           156690178 2113 + 160039680 AAGGAAGGCCCTAGCTCTGTTCCTTGCCTGCCAAGCACCCAGTTCGCCCTGGTCCCAGAAAGAGAA-CAGACACCCTTCTGTGTGAGCAGCTACTGTGTTTAGACATCACTTCA-ATCTCAAGGTTTCCTTGCTGTACTTTCCTACTTATCTTAAATAGCACTTGGCTGGAGTTTCTAGAGCAGGTGGCACTTGGGGATCAAAAATACCTCTAGGCAAGTGAGCATC---CTGCTCACAGCCTGGCCTGTACTAAGAACGCGAAGCTAGCAGGTGTCCATGCCCCGCACATTCTGTCTAAAACTCCCTCCCCTAGGAGG-ATTTTCCTGCTCTTAGGGATTGTACTTCTGCCTTCTGGGACTGGGAAAAGAGAGAGTAGTCCTTAGATTATCACTGTTCCAGGGTCATCCTATGTTAAACAGATAGTCTGTCCC--------CAGTGTTAAAGCTGTCTGGGGATGAGGCCTGTCCACATACTTCTGGCTTTGATGTCTTCTCTT-------CTTGTGTAGACATCCCT-TGGATGCTTCCTTTGTACATTGAAAGCTAACAAATTTCAGGGCAGAATTAACCACCTGTCTTGCAAAATTCTGCTTTCCCTTCATTCAG-TCCTCATTTCCAAAGAGCTAATTTGCGGGTGTGTTCTAAGACTGCTGATATGAATAGCAGAGGCACAAATTCAGCCCTTAAACCTTGTGTCTGGGATTGTTATATATAA--GAATCCATGCATAA----GCAGGTTTTGCTTT----------------------------------------------------------AATAAAAGAAAGA-------------------------TGTAATCAGGCAATTCT------------------TATAAAAAGGACACAGCATGTTTTAGGAGCATGTGTTATACATAAAGTCTAAAGAAAAGGAGCCTCCATCCTTCCCCATATTTT----ATGTATATTTGTCAGACTCATCAACT-TCGATAAAGCTACAAAGATTGAGGGAAGAAAAAAAGAACTTAAACT-AAGATGGCTTTTCCTTTCTTTCTCTGATGTTTGAAACAAAGTTCATGGAAGACAACAA---------AAGCTTCTAGGTCTGCAATAATC---------------GACACATTCCCAGA---------ACTAAGCTATTAATGAACTGTTTTAATGTCTCT---TATAACACTTCAATTAATATCCTTATCAAAATCAGTGAAAAAAATGGAG------AATGTGACTATTAGGATAGAGTTAGTAACAGCAATTTTGTGCCaaataaaataaaaataaataataCGATGCC---ACTTTTCTAGACTATTTCATTTGAAGATTTAAGTGTTAATCTCTATTTATATAATTTAAATGTGTTTTTAATTAAGCTATTATCTAAAAGTCGGCATAAATATTCTTCATAAAGCAAACTAATTAAAATAACTTTGTAAGGAGTGCACCATGGAAATCATGTTGGGAAACTTTATTTTCATTAAGTGGGGATTAAATTAGCTGTAATTAGCTGAGAACCACTTCTGCCCATTTT-ATTCAACAAATATTTATTGATTAT-ATTGTATATGCACTACAATTGTGCTAATGAGTACAAAGTTAAATCAT----------TACGGTTTTCAGGGAATCCAGATGGTTAAATCTGAGGGTTGTAAATCTCATGGATTTGTTCACAGTTGAGAGGGGTCT----TCATTTGCAAAGCAGACCTC---AAATGACAGCTCCAGTGGG--TACAGCTTTGCACATTGCAAGTA-CTTTGCAAAGGGATTAGATGGATACATGTATTTTAGCTCATGTATTATAGCTTTCCTTTCATT----GTATCTTTTAATGTGCATACTTTGGAAAACACAAACCTACAGAATCTCTTTACTTAAAAAGAAAAAAATA---ATgggttagagaaagggttaagtgtgctggcagttaagtgcattggctgctcttacagaagacccaggttcagttccacacacattca-ggcAAAGCATTCAGACACATAAAATAAAATAAGTACATCTTAAACAAAGAGGAAGAACCTTTACTGCCAGCTCCCCACACAGAGTGGGACTTCAGATCTA--TATTTTAAGAATGAAAATCTCAGTTCCCCTTCTGCTG-ACTTCTCATACTAAAG-GATTAGTATCAACTCTCCAGA-----TTTTCTTGCTTATATATATATATTCTTGTTTTTAAAGAGGA-TGATTATTCTTCACGTGTATTTAAAGTTAGGAAACACATAAAAGCAttttattagatatttt
s HiC_scaffold_1 143866283 2104 + 233722169 AAGAGAAGCCCTGGCCCTGCTTTTGG----------GTCCCTCCCGTCCCTTCCCTGCAAAGTGAAGCAGAGATC------TCTGAGCGACTGTCGCATTTGCATAGCCCCGCGCATGCGCACATCCCTCTGCCATACTTTCTCCAGCATCTTAAATAACATTTGGCTGCAGCTCCCAGAGCAGGTGGCACTTGAGGATCAAAAATACCTAGAGGCAAGTGAACATCCCTCTGTTTACAGTCTGCCCTATATTAAGCACGTCAAGCCAGCAGGTGTCCACCCCTGAAGCAGGCTGCCT-------CCACACTGAAGagacatttcttttcctttggggaATTTATTTCCAGCATTGAGAGATTGGAGAGCAGAGATAGGATCCGGGAATATTA-------AGGAGTGCATGAGGGAGGACAAA----CTGTCCCTGACCTCACAGTCTTAACGGTACAGGAGGATCTGTCTTG-CAGCACgaagcttgctt---tctcttctcCCAAACAGGCCGAGTTAGAAATAGCTATAGAGGCGCTCTTTGTGTCTATAATGCTGAC--GTTTAAGTACAGAAAGCAGTGTCAGTATTGCTAAGCTCTGGTTTACC-----TCAGATCTTTATTCACACAGAATTCACTCATGCGT------------TGTCGATATGAATAATAGA---ACAACTATAGCCGCCGCCCGTCAGCTTAGAGATTGCTGTGGACAAACGCAGCCACGCATGGGGCTGTGGGTTTGGTTCTGTGACCTAGTGCTTACTTAGCAAAGCGCAAGGCCTCGGCTTCCCTCACCAGTACtgcaaggaaaggaaagatagagaaaggaaaaggaggagcagGTGTGCACAGACACCTCTAGTTTGAATAATtagttccttaaaaagaataTACATAGTTCCGGGAAAATCattattacat------ttgaaaaaatgggc-----tttttttccatatttttcaaatacatattaGTAAAACTCATCAATTAGAAATGAAGCTGTAAaaatagaaggaagaaagaga----ttaAACTGAAAATGGCTTGTGATAGCTTCACTTCTTTTGCAAGGCAAAGTTCATGGAAGCTCCTTACGCTGTCTTGAGCTTTCAGACCAGCAAGCAACAAGGAGCTCAGATAAAACGCAATGTCAGATGTAAATGGCATAAGCTGTTAGGAAACTATTCTAATGTCACTTAATACAATATCTCAATTAACATTCTTATCCAAGTCACTGAAAA----GGTGTCTACAAATGTGAAGGTGTGGGCATATTTAGTGTTAGCAAATTTCTTtcgaa-gaaataggaaaaaataataacaaacctaaatatttaaagattatttcATTTGAAGATTTAAATGCTAATCTCTATTCATAtagtttaaatgtgtttttaattaaGCTATTATCTGAAAGTCAGCATAAAtattcttcataaaacaaactaaTTAAAACAGCTTCTTAAGGGGTGCAGGATAGAAATCGTGTtgggatattttattttcattaagtaGGGATTAAATTAACTATAATTAGCTTAAAA-TATTTCTGCTtattttcattcaacaaatatttattgattataaTTCTATATGTACAACAATTATACTAATGATTATAAAGTTAAATCATTAAAGCTGCCTATGACTTTAAAGAAATCCAAATTGCAAAGTCT-CGAGTTATAAATTGGATGTGATTGTTCGCAATTCAGAGCAATCTATGCTTTTTCACAAAGCagttcttttaaaatgtcatccCTAATGCATTTGCTGCTTTATAGATCACAGATATTTTTTCAAAGAGATTTGCTGGATAGATACATTTTAACTTAAGGTTGATGGAGTTACTTTCTTTCTAAGTATCTTTTAATGTACA-----------------------Agaag--------ttaaaaaagaataaaaacgtACAGATTATAGGAAAAGTAAAAAGT---------------------------------------------------------CGTTCACGGCACCCCACTC--------------------------------------------------ACTGC--ACTCCC----CTGAGTGAGACCTTTTCTGTAGCTGTTTTAGAAGTGAAAATCTCCATTACCCTGCTACTGAACCTCGAAACCCAAAGTGATTTG-GTAAACTCTCCAGGGTGATTTTTTTTGCTTACACAatacttttcttctgtttaaaaagGGCTGGTCTATTTTCACCTGAATTTAAAGTTTGGTTGCACTGAAAAACG---TGTCTAATATTTT

a score=32388
s chr3           156711219 3615 + 160039680 aatttgaagttgcaTACAACAGATATCCTTCCTACTGATTTGGTATATTTTCA-TTTCAATTAGAAAATCAGTCACTTAAAACTCATATTTGAAGTGTGAAGAAATGTGATTCAGAGACAGAA--AAGTTCTT---CAGTGGGTTTGTGTGCCCTCT------TTAACAACATGGCCA--TATACTTGGGAAATCAGAAACTTCAGATCAAAGCCTAAGGAAAAAGACATTT-TAATCCATTCGTTTGGCCATGAGAAGTAAGTGTGAAAAGGTAGGAATGGAATGAAAAGTGC-------AAGACTAAAATGAAATAAAGATACTT---ACACAGCCTGGTGG-------------------------TTAGAATCAACCCTGCACAGACATTTGCTGAGGCTGGCTATACTGGGGGC--AGCACCCAAAACAGTGAGAT---------CCTAACATGCTTTAGTTCAGGAA----ATGCTTAG-----GCAAGAAAGGGCCAAGGAAATAGACA---ATGACCTTAATCAAG---AGCTTCTTTTTAA----AATCCTAATTGTAAAATT----ATGTCTAAGGTTCTGAGAAACAACAAGATAACATTTTCTGATTTTGAGACATCCAACCAATATGCTAACGTTAGCTTTCAGAGAGAGCCAGGACTTGATCTAAAGCAGTGTTAGTGCAGGATGAGCACTGAGCAAGAGACTACTAATTAATATAAAGTGTTCAAAGGAAATATACCGTTCTACTCAATTAGGAGAAGTGTTCTTAAATATTCCTTTTGATTCCTACTATAATTATACCGTGAAAAAGTTGAATAATTTTG-----CACAGTAAAGTACCAAGTAGGAAATCATTTATGAAGTAAGAAAAAGATGACTACAGTCTAATTATTCTAAGCAGCAGAAAATAGATTTT-----------TCAAGACAGTATTTATGTTCTGGAGTAAAAATAAACATGAATTATTATTA------------------TTAAACTATTATTACCGAACTAA--TCTTGCCACTGTAGGAGCTGAGGTAAGGTGATTTTA-CGGA-------GCGGGCAACCTGGACCACTCAGC-----AGCTGTGAGG-------------------CCATCTTGGGTAATGTGGTT-------------------------------CAGCTCTGTTAGAG-AGAGCGGGGGGGGGGGGGGGAGAGA-----------CAGAGAATGGGCATTAACTAAAGAGACTCTGGGACCATGTGACTCAACCTCCTGCAAATGTTGCTTTAGAGTTTTGCTGTATTAGTTATGAACATT-ATGAAA-GTAGTGACTTTATGGCATAGGAATTTAATGTCTTGCTTA---ATTTATTCATTTACCTCTTACAGTGGTGCTTACCCTGCTAGGCTCTGGGATTAGGTACATTTGT-TTTCAGACTCACAGATATCTTTCCTTTTATTGGCTCTTAGTAAATACTGGGAACTTCCAAAGATGTAACTAACAGCAGTTAGTTAC-------------------ACTGAATTTCttat-----------------attttataatatttttaGCTTAAGAAAGAGAAGTCCTA---TATTTAATGAGAAGCCCATTTTAGGCTTTTTTTTT-------------TCCTTTGATTTTTTTTTTTAAGTAAAGCTACCAAGAAGGGATTGACT--ATTGAACCA---TTCATGGGGTATTGGCTGTGGCATGGG----CAGGGGAGGGCTCCAACAGGAAACAGAATAAGACCATCAGGAAAGTAAT------------------TACTGCAGACAGTTTTCTG---CTCAGTGACTAGGATCCAGCTAGTATAGAGATGTGAGCCAGGGTGGGAGCTGAGG---AGAGGGTAGGTGGTAGGTCAGAATGGGAGAGCATGGCGGGGGTGGGGTGGGGGCAGAGCTCTCACAGTTTCCTAGGAAAATTGGAGTGACCAGGAGCACA-----------GAGACCAT---TGAGAA---GCCAATGCAAAGAGGAACAAATGACTAGTGTATAGGTGTCCCATTGGTCTTGATTTTGAACTTCTGACTCTC--TGGAGAGCAGGTGA-----------GGAAGTATTGTGCATCTAGGGAAGTGTCTTGGGTCTTATCCTGGTGTGTCCTGTGAGTCAAG---AGGGACCACCTT-GATATCGAATGCTCTGTGTTAGG---AGGTGCCTGTGTTTCTCAGGAATCTGA-TTATTAAAAT-TTACTTACAGAAGCTAATGTCTTAGTGAGGAAGATGCAGTTCAGCAGGTAGCCATGGATGTTCAGAGTTGCTATTGCAAATTCCCTTCTCTGAGGGGTCT----GGAGATGAGGAGACAATATTCATGAATCCAGAG--------TAAACATCCCCGG---ATCTAGTCACTGCCCAGGCATGGCTTCCCCTCTAGTACTCTGGCCTTTCATCCCCTCACACCTCTGCC-CTAGACTATGTTGGTTCCTTTCCTCTTAAAACCCATATCACCAATAAATAAGCAACTA----GACAAAATAATTGAGATGCCAACCCAATAACTT-TGTCTGGGGCTCTCATTTG-TCACTTAAACTAGGGCTATC---TATACTCCATAATGAAAGCAAGCTCCATAATTAATCAGCACGGTCTCTGCCAACTCACATCACGAATACCCACAGTATGCATAGCA-TCTCTGCACCCACAGTATGCATAGCATCTCTGCACCCTGCAGTGGTTTCTTTGAGATGCAAAGAATGAACAGGTGACTTT-TCTCTGACTCCATCCAG---------------------CAGTGTATGACG--AGGACTGCTGCCTTCCAGAGT-ATTGCCTATTAATTCCTAGTA--------TCTGTCCCACTAGA----GGGGAACCTCCTCCTGTTTTTCTTTTACAACATTCGGA----------CATTGTCGTCTTTATCTATCCTTTGTCTGTAATCTGTGATTACAGAATCATTAGAAA------CACAGAATGTGAGCACTGGGAAAACTTTAGAAATACCAGCAATGCTGTTTTGAGAACTATGCCAGGTCTTTACTTCGTGAAA--AGTAACC--ACTGATCATTAAAT-GCAAGGCAAACGTAGGGGAGAGTTCAAAACCTTAA-------CAACTTGTTATGTTAGAAATCTGACTTTCAG----CAAACTTCTACAAAATGCATTATATTGCTCAG-TTTTTTGCTTTAATGATTACCCACATGTCTGATTCTCTTTCTACTTTGAAGCCTGAAGTCTATCAGGCCAAAAACA-TAAGGATGTTTGCTGTCTGAGCAGCAGCATGCTAATTATCTAAGCCTTTCTTTTGCAAGAAGCTCGTTAAGAAATCAGAAGGTTATGCTGAGAATATTTACTGACAAGATTTATAAATTTGATCTAACCGAGCCATAGTTTTAGTAAAATACTGATTTATAAGTAATGGCCTTAAATGAGATTCCCATTTGCAAACATCTTTCTAGGTAGAAAAACACATTACCAATATT-ACTCTGTGTCAGGACGTTCTCATATCTCATTAGGTTTTGATATGTAAATATAGTTTGCATTCAGAATAATAAACACCTGACATTAGAAAA-CATAATGGCCACAGAATAATCTTGACTTTACACATTTGTAAACATTGGATGATGAGTAATAAGACTTGCAAATAAATTCTTCCCTAAATCCA-GAAGATGCAGAAGCCAGTTCTGGAA---GTTTGTATGAGAAGAGGTATCAAGCTAAACAG-------TTGAACAAATAATGCT------AAGATAGTTAGCTGTTTGCTTTCACATTTGAGTCACTTGCTTTAAGGAACTTTGGTGGTGGAGCAAGCCTTTTCAGTG---GTCCCAA---------ATAAAATTTAATACTCATGGGTCATGGTAGGAATCTGAAGAAAAGATGTATTGTAGGATTAAAAGAGAGAAAGCTGGGCTCTGGCATGT-TCACTGTGGACTGAATATGAGACAA
s HiC_scaffold_1 143887939 3812 + 233722169 AGTTTAACCTTGAAAACTTCAAACATCATTTCTAGTTATTTGGTGTATTTTCAACCTTAATTGGAAAATTGATCATTTAAGGCTTGTATTTGAAGTGTAAAAAAATGTGATCCACAGAGGGAAGTAAATTCCTGCAAAAGGGGTTTGAG-GCCTTGTGAAGTCTTAGCAAGATGCTTAGCCAtgctta--aaaatatatacttggGAGCAAAGCTTAAAGAAAAGGACATTTCTCATCTGctattttgattattaaaagAGGACCTGAGA-----GGAGTGGAAGAAGACGTATGAGCTAGAAGAGAAAATTGCAAAACAAGTATTTCCAACACTAACTGGGAGGGCAAAAGAAACGAGTCTCCTTTACTGAAAATAAACCAT-TATAGACATTC-TTAAAACTGGttaggcttggggctggggatttagctcagtggcataagcgcctgccttataagcctgtggtcgtgagtttgatccctggtactggtaaaaata---caaaaaaataaaaataaataaaactggtcaggctaagtttttattttatcgcAAGAGCACTTTTGGAATTTGtggtttctaaaatttt----atagtCTAGGAAATACTTTT--ATAGAAAAGAATCACTTTAATAAGACAtaactaactttaaaaaaaaataaattgtaattcTAAAGTAATGACAGT------------------AAAGGACCAC------------------------AGAAATGCCTTGGTA----------AAAAATGTTCTTGACTTTTCTGTCCAATTCCAGCAATAAAAGTACTCTTAAAA-GTAGTGTATTTTTTACTAccagaaaataataacaaat-ggaaATTTTTGATGAAG-AAGATAAATATGACTGACCTCTTATTATATTAGGAAGTAGATAATAGAATTTCTTATAAACTTTCAATGTAatgtttatgaatt----taaaaataaatatgaatgattATTGAACTATTTGAGATGTATTTTAACCTAAGTTAACTGTTCTAAAATCTAACCTAtgta----ttgaaaaatgaaaatctcagTGGAAATGTGTGTAGATAATACAAAAAGCTAAGCTTGCAAAATGTAAAGTATTACTACATTACATATACCTGTTTAGATAATTTCATTGCTTTTAAGCTTTAGGCCTTTATTTTTCAAGCATCTCCATTTGTGTATTATGAATACTGGAAGATTCTAGAActccttttattaaaaatta--tactaacTAGAG-------GATGTTACATGACCTTCTTTCATACAACTTTTG----GGAGTATTGATGCCTTAACTGTTAATGTTTGTGAACTGTGATACTTCTAAAGGTTATAAATTTAATATGTGGCTTAttaatgtttttatctttcttttaa---------------tctATTTACTATAATTATAAACATGTATATTTCCAGCTAATA-ATGGTATTCCtaaaattagctttttaaaaacagtggtaCCCTCCAAAGTTAGAATTGAT--TAGATAATTACTCCTCAATTGAATAGATTAACTGAGTTCAATATTTTGTCTGgcttcagttattttaaaatgttttcagc---aaAAAATGTACTTATAGTTCACTTTAGAAATAGCCCactatggttttttgttttattttgtttggtttgatttgatttttatttttttttaaa-ctactgagaat--attaactgaaatgaaagaaatttgaatGGTTATTGATTTTTTCGTGGAAACTCATGTGAGA--TTAAACAAGAG---GAAAGAAAC--TTGGGAGAGAAGTCTAGAATTCTGTGAATTTTAAGGTAGAAAATGTGCTGGAGTTCATTTTCAGTGATACAGCTTGAAT-------TCAACCAGAATATGCATTAGGTCATAGAGAGTAACATCTTTGTTTTGATaggacaagaaaacaaaagaaagagagg-----------catAGTTACccatctgagtgtgtgtgtgtgtgtgtgtatgtggttgtgtgtgattgtgtgtgtgcatgtgcatatgctaaaataaacagataattaAT------------CATT-----------TCAAGTGCTGGCACTTGTTGGAAAATCAAAGATCCAGCTACAGAGGAGCACGATGTATTTCAGCAC-CATCTTGGTTCCTGTGGTAGACTGTCAAGTGATCTGAGTCTGGAGAGTAGCTCAGAGATTCAATGC-CAGCACTAAATAAACATATTTGTCTTTCTAAGAAATTTGGGTTATTAAAAAATTACACtcagaaataactatcttaatgGGAAAAATG-GGATTAGAGAACAGccaaagactttcagaactgaaATAGCGATTTGTTTTCTCTGGTGGTATTTCACAAATAAAAGGATTCTATAGCTATAAATGTAGAACTAGTCAATAAATATCACTGGGAAATCCAGACTTTGATGAGATCTGGCTTTTGCTCAAGTGTAGTGGCATATCTTTCCCGTATAGCTGTGTAGCTGTATGGTATCTGTTcctcttttcttaaaattcttattGATGATAACTAAGGAACCACTCAGACAAAGTAATTGTGGTGTCACCCTAATAAATTATGTCTAGGGCTTTTATTTGCTTGTCTAAATGAGGGTTACAACATGCCCTTCTAGTCAAAATTGAGCTACATAATTAGTC----CAGTTACTGCCAATTCACATCATGAAAACTCACAGT--GCATAAAAGTTTCTGTACTCAT-----------------TACAGGCTGCA----------TGAGATG----GAATGAGCAGAAAACCCCATTTTTGTCTCTACTCAGGGTCTTTGCATACTTTATTGCCTCTGCCTGGCTTCAGCTTTGCCCCTTTTGGTAGCCACTACCTGTTAATCTTTGAGACCTTGACTTCTCATCCACTAAACCTTTATGAACTCTCACTTTATCTTTTAACATAACTCTCTGAGACCACATTTCATAGacatttctataatttctatGGACTTACT------TGACAGATTTTTTAAGTCAGTTTCCCCCATTTGTGAGCAGCAACAGATTGGCAGACTTTCTGACA-CATTATTCTATACACCAGGTCCAATCATtgtcttatgaaagaagtgatcTTAATAATTGTTTAATTACAAGTAGGAAGAAGTGATAAGTTAAAATCCTTAAAGCTGCACTACCTATT----------TTTGACTTTTAAGCGTCAAACTTCTTCAAGACTTAATGCATTATTCAgacttttctaaaaaataattaatCACATTTGTGATTCCTTGTCT----TGAAGTTAGATATTTATCATCCCAGAAACACTAGAAATGTATGTTCATTGAACAACTGCATGCTAATTACCCAA-CTTGCATTATACAAGC--CTTATTAAGAAATAAGAACGTTAAGTGGAGACTATTTACTGACAAGTTTTGTAAATTTGATCTCACCAAGATGTGGTTTTTCTAATACGTGTGTTTACTGGTAATAACC-TGGATGACACTCACATTTCCTAACATATTTCCAGGGATAGAAACACACTGCCAAAGTCAAAACAGTGTTAGGGTGC-------TTTCCTTACATTTTGCTATGTGTATATTGTTTGCTCTTGGAATAACACACAGCTGGCAGTACAAAAGCTTCCTGGCTGCAGAATAATACTACACTTATCCATCTGCAAATATC-GATGACTGTTAATATGACTTGCAGACATTTTCTTTCCCAAATCTATGGAGGATCAGAGGCCAATgacttaatttgttttctttaaaaga--tacCTACCTATGTAGTGTGAAATTGTAGGAATAATACTGACTCCaaagtgttttgctttttgctctaatctttgagtttctca-----------ttcagtgaaaaagaaatttttttaaaaaagtgtcatAAAATGTCAGCATACAATTAAAGACTGACCATTGATGATAAAAATTTAAGGAAGTTGAATTTTGTAGCATAATA----ATGAATCTTACCTCTAATGCATCTGAAAATGgactgaaaatgagaaaa

a score=26951
s chr3           156716232  900 + 160039680 TGCTCTCTCTAGTTTTCATGGGCCAAGAGTTCAGGTCAGGAAAGCTTAGCAG-TGTGTGCAGAGAGCCAGCTTGCTTCCTGCTTTAAAAAAAAAAAAAACATAAAACATGCAAATTGTCAGG------ATCCTGTAG--------------------------GAAAACTAGGCACTTAGATGGGTTTCTTGGGCTCATAAAATTAAAGTACCTCTTTTGTCAATATGTGAGTTAGAGGCAGTTCTTGTAAATGTGAATGTAAATTAACT-TGTAATTTCCCCTGCATATTAATTATAGAATAAGTCCTCCCTGCCTTAACCAATGTTTCCATCATGGAAGTTCCTGTTTTTTCAGTG-------------------AAACTTAGAATA------------------------CCTCT-------------------------ATTCCTCTTG-------TTTTTACCCTG-------------------------------------------------------------TTAAGT----AGG-----------------------------------------------------------------GTTGGTTGTTTAGAGAAATCATGACA-----CATTTTACACATCTA-ATTTTTGGTAGAATTTGAAACCTAATG----TCTTTTGGTCTTCAGGCCAA---------CCCAACTTTAATTCCCAATTTTACCAATTCCATCATTTTATCAATGATGAAAGCGATATGAAATGTGATACTAATCatttttatatttaaaaaattaGGAGAGCCTTTATACCACATGTCCCTGAGGTTACATATAATTCAGTGTTTCTTATCTCAACCAAATTTAAAATTAATCACTTGCCTAATTAGCTACATACATTTAATAGCCCATAATTTAATCATGTGTCTTTGGGGCAGGATATTATTTAAATCACTCCAAGTAGACACAGGTGATAACTAATGAGAATTACAAGGAAAAAAAGGAATATCTAGGAACACAAGAGGGATGTGCCAAAGTTATTG---------TTGATAGACAATTATGTGACGGAACTAAGAGCTAAGAATATGGCTAGCATTTGGAGCCAAACAAATTTCCACGAAAGAACTAGACATTTTTTTTCCATT
s HiC_scaffold_1 143893114 1132 + 233722169 TGCTCAGTTTAATTTTCATGGACCCCGAGTTGTCGTCAGGTAAGCTTATCAAATGTGCTCAGTGAGC-AACTCgcttcctgtttaaaaaaaaaaaaaaat------tatccaaatTATCAGGTAGATGATCCTGGAGTTATTTTAATTAAAggcaatggagaaaaaaattaggcACTTAGATAGGTTTCTTGGACTCATAATATTAAAGAGCTTCTTCCGTCAATATGTAGGTTAGAGGTAGTTCCTGTAAATGTGAATGTAAATTAACTGTGTAAATTCCCTTACACGTTAATTATAAAGTAAACTCTTGCTGCATTATCTGTTATTTCTAGGATGGGGATTCATTTTTTTTAAGGGAAGAAAACTCCAACATGCTAAAGTTGGAATATTTTAgatctctttctttgcttccccTCTCTGTCCTTAGTTGCCCAAGTATCTAATTATTCTTTGATGAACTTTTTGCCTTAAGGCATTCGATTCATATAACATACCTAACAGACTCTATTTGGCAACATCCTGGGGACTGATTTAAGTTCTAAGGACTCCTGCACATGggtataattttgaaaataaatatagagCTATTCTCTTCAGAAACATATGCCAGTTAGTTTTTTGAAGCAATCATGAGAAATGCCATTTT---TATCCAGGCTTCTAATAGAGGTTAAAATCTAATGGCAAGCCTTTGGTCACCTGGCAGATCCCTAACTTCCAactttcatttctaatttgaCTACTTAGATTAT-----------TAAAAGACTCATAAAATATAATAGTAATCATTTTTCGAgtttagaaaatgaga-aatctCTATACCACAAGTCCCTGAAGTTAGGTAGGATCCCATATTTCTTATCtcaactaaatttaaaattaatcacTGGACTAATTAGTTACATCTATTTAATGGCCCATAATTTAATCTTCTGTCTTTAGGGCAtgatattatttaaaatgctCCATGTGGACATAGGCTATAACTAATCAGG--CGGAATTAAAGAAAAGACTACTAGGAAATATAAAAGCTCTCTGTAAAACTTACTGGCAACATCATTGATGGA---------GACAGATGTAAATCCTGAGTATGTGATTTGAGCTACAAGTCAAATATTACTTCATAAAAGA--TAAACTTTATTATTtcact

a score=9971
s chr3           156733005 532 + 160039680 TTAGTCTATAACATT------CTCTGTTTTTCCTTTA----------------AAATAAGTTACTTTAAATATTTATTATTATCACACTTAAAA--TGGGAAAATGAGAGTTAGTGAGCATAAAGATTTACAAA--TTCAAAACCATGGAAACCCCCAGCCCA-GACCTCAGTCTTGGTTTTCCGATCTCTTTGTCAG---------------------ATCAGGAAC------TGTTGCTCTTGCTCATACAGCTGATATG---ATTTAAGATGGGGCAGAGGAAT---------AAGAAGGTGGGCCCTCATCTATTGAGC------TTGACAAAGAAGCCTCCTCAGGCCCA-CAGAGACAGATTCTCA-AGCACCAGGCATGGCTTTAGCCTCTGTGTAAAGGACCCACATGGTCCCCAGTTGTGATCA-TCCTCCAGATGGTCAGCAGCATAAAAATCTGGATGAAAATTAGGGCATGCAGATGATCTATACAAGGTTCACAGCTTGACACCACTGAAGCAATTTCAGACATCATGCCTGAAGCTCACAA-----TTTTTATTGCTTTGAAACAGAGAAAAACCAGAGTCTTAATTTTTTTTTAATT
s HiC_scaffold_1 143907966 610 + 233722169 ttaatttttaaaattaaaggactctgcttttgttttacttacattatttttttaaacagcctA-GTTAGCTATGTATTATGAACCCCCTAAAAAGACAGAGGCATTGGAACTAAGGAAGTTTAAGATTTGCAAAAATCAACAGCCAGGAAAACTGTTAAATCATAAGTCCAACCTGAGTTCTCAGATTCTGCTGTTAGTTATGTGACCGTTTATAAGTAATCAGAGACAAACCCTGTTGTTCATCCTAGTAAGAATAACACAGGAAATTAACACCAAAAGGAGAAATTCTGTGTAGAATATAACAGGCACGGTTCCACTTTGCAGCAAGTTGACAAATGGACTTCCCAAGGCCCaaccaaaatatttttccatagcAGCAGGCACAACTTTAGCTTCTGCTGAAAGGACCTGGGCGGTCATCTGTAGCATTCACTCATCCAGATGGTCAGCGCCATAAAAACTTGGACAGAAGTGAGGATATGCAGATGAGCTGTAGATGCTTCACAGCTTGATACTGCTGAAGTCATTTTCAAAAGTA-GCCAGAAgcttagaatattttttttcttattttaaaacatggaGCAAAGCTATTCTTCATAGTTTTGCCATT

a score=18577
s chr3           156737695 831 + 160039680 TTAGAGCCTGTATATTTGATTACT-TACAA-TAAAGTTTTTCTTTTTTATCACATCCCAGACTCCCACCATATAGAACAATAAAATCAAAACACAGGAAATTGAAGTGTTAAGACATAAA-TTATATTTGAGTAGGTCACTACGGATAGCTAATATTGACAGAGCTTAGAATGAGCGTCCTCTGACCCTTTGGGGAAAACTGAGAACAGGTTCAAGCAGC--AGCCATCAGGACTCAGATTTCAATTTTGTAAGTGCAAG-GAAAAATATTAAGTGATAATT-----ACAGAAGTTATTTGAGACAT-CAGAAAGCTTGAAGCCAACTTAATTACTGCATTCTACTATATATATGTATAT-TTGAGAAAAATCCATAACTTGAGAGTCAGCTTTCAGAATTTATGAAATTTTGCAGTGTGCATTTTTAAAAC---AGTA--------TTTTTCCATAGAA-TAAAAATATTAAAAAATCATATC---ATAAGACTCAGCCTTAATTACCATGGAATATAGTTTATGAAGTAAATAAATCACATTTCTGCCAAGAATTATATATGGTTATG-AAAAATTAATAAAACCATTTTGAATGGACCAAAACAATAAAAAAGAATGGTGCTTGA----ATCTTCTAGGTTTTAAAAGCCTATCCAGAGAGCAGTTCTTCCAGAACTG-CTGAGGAACATATGAAAAGATATATGCACGATCATGAGGTGATTGGATCAT---TCTGAAACCTGTATTCCC-CATACTTGTCTGGAAG--TATTCAAAGGTCTGTTCTACAGAAATTTCAGTGTTGCTACAATGGGCTGAGATACAAACATGGAAGCAGTTCATGCTAACCAGACTCCATTTTCCTTG
s HiC_scaffold_1 143910986 828 + 233722169 TTAGaaactat-tattttattactaCACAAATATTACTTCTAATTCTCATCATATCTTAG--TTCTATTACGTGAAGCAATAAAATTGAAACACAGGAAATTGcgttttttaaacttaaaagcgTTTTTGACCAAGTCACTACTGATAGCTAATATTGACAGAGCTTCCAATGAGAACCCTATGGCTCTTTTGGGAAAAGAGTGAACAAGTACAAGAAACATAGCCATTAGGAAAGAAATTTCAATTTTGCAAGtgcaagaaaaaaacattaagctataattaaaaaaaaaaagttattggaGACCTCCAGAAAGCTTGAAGCCAATTTAATTAATGCAACCATCTACTTCCGTTTGTACATTATAAAAAATCAGTAATCTGAGGATCAGCCCT-AAAAGTTATAGAA----------TACACATTTAAAACCTaagtaaattttttgttttctatgaagTTAAGAGAATCTTAAAATTCTATCTGTAATAGATGTTATcttcttta--------------ttattaaataaataaatcatcagATTATTAACAGTCATATACAgccacataaaaattaataaaaactgctTTAACAGACCCCAAGTATGAAgataca-aatatttgaaattaactTCAGGGATATGAATGCCCATAGAGAAAG----------AGAATTATCTCTTTAAAACACCAAGAAACATAGGCA--ATTCTGTGATGATCAGCTCACCAATGTGCTGTATATATTCTTGCATATATGATCAGTAGAATATTCAAAAGTCTTATCTACAGTAGTTTTGATGATAACACAA--GTCTCAATTGCATATTCAAAATGAATTAATCACATTGGGACACGAATTTCCTTG

a score=34795
s chr3           156739716  978 + 160039680 CACCTATCTATTCACATGCCACAGCACACTGAACAATAGTCAGTGAGCCTCTAATTATGCTTT-TACAGTTCCTG-CAAAGGATGATCCTC-CTGTAGAGGTGCATTTCCTTTCAATTGTGC-ACTTTTAAAGAACTTTTCAACATCCATTTTAGAGCCAAATGTCACGATTTTCACCATAAGACATGAAGAGGAAGCCATGCTGTGGTTCATCCC-TGTAGAGATGTATGCACAAAACATTTTGTGATGAA-GTAATCTTGAG-GATAATATAATTACTCGTTGCAATTATATCCAATTCATCAGAATTCCAAAGTACCTATCAGTTATTTATTTCTGTGGAAGAGAGCAAATACAAGTTAACTATTCCATGGAAATGGAATGCTTTAAGAATA----------------------------TTTTTCCCTCATATGTGAAGTCTATTCAAATCCACCAACCTGATATTACTATGCATCACTGGCTATATTTCTTGTTAGAGTGGACAACAAAATTGACAAGTTAGAGCTCAGATGAGGAAAAAATCACTGGGTGTAAAACCTTAGTTCACATAGGACCGGCAGCTGGTAAATCGACTGTAAATTATGGCACTCTATCTTCAAAGTTCTATCTGTTGACTAAGTTGTAATTTCTAAAATTGGGGCTGACATCTAAGCAAGTTTTTTTTTTAATGTGGTAAGAAATGGTCATACTGTTAAAA----------ATGTTGTTTTTA------------GGTGAGATGAATCTCATTTTTGCATGGAATCTAAATGCAGTTCACACTGTGAAACTTTTTACAAATCAGTTTGAGCTGCACCCTCATTATGGGT-ATGAGGATTGAGCAAATCCAGACACTGTTAGACCACAATAAAATTGAAATCTCTAATATGCTGCATATTGCTGAAGATCGCAGACTCATGAGATGAGCCCAAATCTTAAAATTAAAAAGATACATAAGTTGTTGTTTACAAATCAAGCTGACCTCTCCTGTTTCTGTAGGAACTGGCTtttttgt
s HiC_scaffold_1 143912921 1015 + 233722169 cATCCATCTCTCCGTATAATAGAGTCTACCGAAAAATGGGCAGTGGGGCTCTAATTGCATTTCGTGAAGTTCCTGACCAGAAATGATTCCCTCTGTAAGAGCTGATCTTCCCTGCATTATGCTACCACATAATAACTTATCAATATACATTTCACAGCTGAAAGCTAAAGCCTATAC-GTGAGATAGAAAGAAGGA---ATCCTTTGACACATTCCATTTAGAAAGAT-TCtaccaaatattttataatgaacaTAATTTCTAGTAATGATAAAATTATGAG----AGTTATATCCTGTTCAACAAAGTTA-AAAATGGATGCTCcctatttcttcctgttttaaggaaaataaattagataACATTTTTATGCAAATTATACAGTTTAAGtacagcttgaaaaaaaaaagaacagtttggcGTTATTTCTCAGGATGTGAAATCTATTCAAATTCACAAACCTGATATTATTATGCATCACTGGCTATGTTTCTTGTTAGAATGGACAACAAAATTGACAAGCTAGAGCACAGATTAGG--AAAATCGCTCACTGTAAAACTATGTTTCAAACCGGATTTTGAGCAGGTAAATTGTCTGTAAATTATAGTACCTTATCTTCAAAGTTTTATAAATTGAATAAGTTGTACTTTCCAAAATTGGAGTAGACATCtagtcaattttttttc----tgtagtaagAAATCGGTACAGTGTTAAAATATGCACTTTATCTTCTGTTTAGCACCTGAGTATGACGAGATGTTTCTCATCTTTACATGAAATCAAAATGCAATTCACACTGTG-AACTTTCGACAAACCAGTCTGAGCTGAACACTCATTAAGGGTAATGGAAATTGAACATATACAGACACTGTTATAGCACAACAAAATTTAAATCTCTAATGTACAGGATATTATGAAACATGAAAGATTCATGAGTTGAGGTAGGatcttaaaatt-aaaaggtaCATAATTTG--GTTCACAAATCAAATCGATGTTTTCTACATTTATA-GAACTTGCTATTTTGT

a score=29435
s chr3           156742923 2917 + 160039680 TAATAGTGATCAATTTGGAATATCTGTGTCTTGTGTTCCTTGGGAATACCGGAAATATTA-TCTACAGTCTGAT-TGAAAACAACAATTACAACAACAGCAATGGTGTG------------TGCTCAGAGTTAGTGGTACTGACA---------AATGTCCTGGGTCCAGGCCAGATCTTTGCACACTCTCTGTGCT------------------GAATGGAAACAGGAGTCACCCTTTCCTTCACTAACTCAAATGTGCTGTGGAAACCAGACATGAGGGAAAATTCCAAAACTGCTTTGCAAAATTTAAACAACAATCCAAATATCAGGCATTAGGTTCAGTTTCAAGCAAAAAATATTGTCCTAATTCATATTCTTGG-GATGGCTGTCTACTGTTTTTGTTTTGTTTGTTTCTTTGTAGAACCTGTGTT-TTGGCAATATAGAGCCTATTAAAAATATA-TCTGGAAAGACATTTAAACTAAATACCTTCCATATTACACTGAGAAGAATGACCATGTTTTCACATGAATGATGAAAAAATGGGGCCAGTTTAGAGGGCACCACTGGGGCTCAAGGCCAGCCCACAGTGGTGTGATGCCAGCTGGCTGAATCATGGGAGGTTTGCTCAGACACTGTCAGTGCGTGCCTTGTTCAGTCCAAGTTTGTCTTACTCCAGTTA-TAGTGAAGTAGTAAAGCAG--GAGATAAAATACCTTC--TTCCTCTACATGTCTGGATAAATGGCTGGAGGATTCATTTTCTTTGGGTAACTTT--CTGGTTTCCATATTTGGAGGGCTTATTTATAATAACAGAAGAGAGTGAGG-CACTGTAAAACCATTCATCCT-GAGAACCTAGAATGGAGGTGTGATTTCAGACAAA---TTCCTCTCTCCACAGAATAAGTTACAGAATCTTAATTACTCCTTAGTCCACATTCCCCAGCATCAGCTCAAAGTCCCACTCTTCTA-CTAGTATAACTTAGAGTAAGACAAATGCAGGAAGGAATGATTCTTTCatatatatatatatatatatatatatatatatatatatatatatatatatacacatacacacacacacacacacacacacactcaagtacatacatatacctttcaggtatgtcttTTTGTTCCAATCTAGGAAAATTTGTAAAAGTGTGCCACTTAGATTGCTTTTTAAGCTGCAATTGAGTCTATAAGCCATCTCATCTCCAAGCCTTACTTTATATTGCGGTAACTGTCAAAAACTACATTAAAGCTCACGCTTTGCAGGATCCATCTTAGAGGGGGATTCTGTGAGAATTAAGTCTTAGGCATAACACTGCAGACTGAATTCTGTAGCAGAGGGGAAAATGCACAGTGATGTGCGGGGTATGTTAGTCCTGGATTTCTCTTTGGGATGGTGTACGCGATTTTTGtgtgtacatgtgcatgtttgtacatacacagggagaacagcaatcaacctcagctaccattcctaaggtagtgtcagggtttttcataggcctggaactcaccagattaatcttcctggacagaacagcccagggaccctcctgtctctgctttcccaggacttggtttacaaatgtctaccactatgcccagatatttttatgtgggttctggagttcagacttgcacagtaggactttccttgctgagatatcccccagACTTTTAAGATAATTTTATGATATGCTAAAAT-TTTAATCTATAT-TTTAAGTATACACAGTTCCTAATGAATATGATGCTTTAGTTTCAGAATGTTTAGAAAATTTTTAGAAATAATTTT-ACAACAAGCAACACTTGTGATCAGATTGTGGGCCTGACATAGTTATTTGTTT--------GTCTACAAAGTGATTTGAGCCCCAGAATCGCCATCTATTCTACAAG-AGTTTTAGAGAATTAGAGAATATGTATGTAAAACAG--TGTCTGGGATAAaaacaaactaacaaacaaac-aaacaaacCAGCAACAGAAGGCATTTATTTTCAAATTGCACAAATTGATCTTATAAAATGATTTTCTACTGATGCAGTGTGAATGACCTTAGAATGATTTTATTTTA-------TTTATTTCAAAGTAAATACTGTATCCTGATCTGTGACT---GATGTCTGCAA----------TCTTTAAAAGAACAACATG---AAAG---------------------------TAACGTAAGCAAAAAAGAATCTCATAGGCACATACCACCTTGGTGACACACTTTCTTGGCCTCTCC---------------------CTGGG-----------TATAAAAGAATC---------------------------ATCAAATCT--GAGTTCATTTTAGGTCAA----------------------------------------------------GGTAGCCG-------------------CCCTGTGA----GCAGCTGA------------------------------GGAGACCTGAGTCAAG-----CTCGCTTGCTCCAGTGATTGGAATGAAAGAATATGGGAGAGACAAATGTCTAGGG--------GCTTTG----------------------TCCCGGAAGTTCTCTCCAGCAAGTTTATTTCATGCTCTGTTTGCATTTATTGAACTACTTCTGTTTCCTCAGAGTGCTCTGCAAGTTGGGGATTTAAAATCAACTGAATGCATTCCTTTATTGCTCCTAAGAGAGCAAGACACAAATGTATACAGTGT-------AGCACCTAATACATCTTGCTAGCACTGCAGGTCATAGCTGTGCTTATCAAAGGGCCTGATATGTCTTATGGTGCCACAGAACAAGGCGTGATGAATTCTGGCTGGAATGTTCGCAAAGCCT---ATATATGACCTCC---AAAGAGGTTTGCAGCCTGCAAAAGAG--------TGCTTCCCAGACTT----ACTAAA--------GTTTGAGAGAAGCAAATCCATGCTTGGAGTAACTCCTTGTGTATACAATGTGTC-TCACTTGGAGTGGCCAATCAGGAAGCAAGTTCCAGGAGCCATCTGGAAAATCTTCAATAACACACC--GTAATTTGGACTTT--GTTTCTGAATCAGTAACGGA--AGCTGTTTGGAAGATGC-------------------------------------------------CTGGAAACCCTG--GGAAACAACTGATGATTGTGGTTAGGC-TGAGAGGAGACTGAGGGCAAAGGTTCCCCAGGATAAAAGTCCTAAAACAATCTGCAAA
s HiC_scaffold_1 143915948 2927 + 233722169 TATTGGCTATCAA---AGGATAATTGGAATTTGGTTTCCATAACAATATATGATATTTGAATCTAAAGTTAGGTGTGAAAATAACATTAATGATagcaataataaaacaaaaaactaaagttACTAGTAATTTATAATTCAGACACTGCATGTAAATGTTATGAACCTAACCCAAGTC---ACATATATTCTGTACTTTAGTTCCTTCATTTCTAGAATGGAAAAAAAGGTAAAGGTACCATCTCTTACCTCAAGGTTGCTGTCAGAATCTTTTGCTATGAAAAAAGTTAGAATT-CTTGGCAAGgttgaaagaaaaatttgaatgTTAAGTGTTA--------TTggagtaaaaagaa--ataatgattctCATTCTTGAAGACTGTTGGTCACTATATACATTCTGCTT---TATTGATAATGCAAATATCCTTAGCCATGCAAATTCTCTTAGAAGTCCACTCTgggaagaaatggaaattaaat-tcttcaa----aaattgACAAGAATG----TGTTTGGACTCTGCTGATGAAAGAAAGGTGTCTGCACACAAGGAGCCACTGGGGCTCAAGGCCACTGTGCTCTGGTTTGATACCAGCGAGCCAAAGCAAGGAAACTCCGCTCAGACATTAGCAGTACTTTGCTTGTTCAGTCAGAGCTTATCTTGCCGCAGTTACTGGTACACTAACAAAGCCGCAGAGGTAAAGTATCCTCAGCTCCTCTACATGCCTGGAGAGAGGATTAgaggctttcttttctttagctAACTGTGTCTGGTTTCTGTATTTGGAGAGCTTATTTTTAAtaactgaagagaaaaaagatgaagtGAAAGTGTTCTTTTTTGAGAGATCGGGAAGGCAATACAGTTTCTGATCAAGGCTGCTTCTTTTTACAAAATAAGTGACACAGACTTAATTACCC----GTCTCCTCTCCCCATC--TGACTTAAAGCTGTTCTCTTCTGGCAAGCACAGTTTTGAGTAAAATGAATGCCAAATggataaatgcttttaaa-----------------------------------------attttttc-------------------------------------------tgtacCTTTCAGATATTTCTATCTGCTGCAACACaggaaaatgtataaaa-tgcaCCACTTGAGTTGGTCTTTAAACTGAACTCATATCTGTAATGCATCTCATTACTGAGCATTATTTTACAGAACAGTAGCTGTCAAAAACTACGTTGAATCTAACACTCTACAGGTTACATCTTACTGGGAGATTCTCTGAGTAGTAAGTCTTGGG----------------GAGATTCATAGCCTATGTGATCAAGCAC--------------------------TGACTTCTC------------------AGCTT--TGTAGCCACTTACATGTT-----------GGGGCTAACAGGCAT--------ACTACAA-------------------ATTGTGCATAGATGGGGA---TAATGGGTTACTCTT-------------------------------------------AGGA-------TAC---------------TACCTAGATG-----ATGAGG------------AGA-------------------------GAGATATTC----------------------ATGATGTGCTGAAATCTCTTATCTACATATTTAATTATACGCAG-TCATAATAGATGTCATTCCTTAAATTCCTATTATGTTGGAAA----TAAAATTGGCTTTAAAAACAATTGGCATTCAAATTCAAATTCTGGGTTTGCACTCAATATCTGAGCTAGGACAAGTCTGCTAAGTTATCTGATCCCTGGAATCCTCATGTCATTGGTAAGAAGTTATAGCGCATGAGAGAATATGCACATAAAACCAGCTGTCT---------ATGAGCTCACTGGGATGTGAGACTACCCAGGAAAAGGATTCA---GTTCTCAAACTTATTATTTTTGTCTCACAAGATTCTTCT-TACCACCACAG---------CTTGAGAATAATTTGGCCCTGAATAAGTTTTAATTCAAAGTAAATATTGCAACCTGATCTAGAAATTTGGAAATATACAGAACAGATGCTTCTTGCAAATAGTAGCATATACAAAGCACTTTCTTCACTTCCTCTCCTCACATTGACTTTAGAACTGAGGA--TTCACAGGGCTTCACTTCCGCTGT-ATACTCTTGTTTGAACCTTCTGCATAGAGCAAGAGGACTTAACTGGAGGTGCGTTCTCTccaaaagtgtctattcatttgcTAGTGTTAGTGATATGAGCAGAACTTGGATTCCTTTTCAGGTCAAACTGTCTTTGGAAAATATATGTGGTTGAATTTGTCAGTCACAATCCATCAGGGTTAGCTGAGATGACAAGTTAGTTCCTTCCTGGGATGTTGGAGCTGAGATCAGATCAGAAAGCTATTTCCCAGCAACGGAGACATGAA-CAGGAACTCTTTGTTTGCTCC-----TGGGAATGAAAGACTACAAGATGTACATGTCTTTTGGGAGTTCATCACTTTGGTCACCAAAGGAAATAGATGACTCCTCACAGTACTTTATAACTACTTTATTTCATGCTCTACTTATATTTATTGAACTGATTCTGCTTCTTCATA-CATTCTAGATGTTGGACATTTAGAATCAAATAAGGatagtatttttttcaatttggAAGAAGAAAGCATGAATACATGTAGTACAATATAGAGCACCTAATAAATTCTGCTAACACTGAATATAACAGCTACCCTCCCAAAAGTGCATCGTAAA---TACTGTATCACAGAATAAAGAGTGATTCATTTCATCTGGATGATTTGGAAGGCTTTAAAAAGTGGAGCTGTTGGATGGAAATTTCCTAATGGTAAAagagataacatttttttttcagacataAAAACTAGATAGGCaatgtttaaaagaaatgacATGGTTTTGAGAATATCCATACATGCCAGCAATGTATCAGTACTGCAAGAAGATAAAGATAGAACCAGCT----------TGGGGAAGATTCTGACTCATATACTAAGTAACTTTGCCCTTAAATTTCTGAAGCAATGAAGTGCTAGTTATTTGGAAATTGCATTAGCATAACACAAGGGTAAATActtatagcaaaagaaaaaatgatcacTGGCACCAATGTAGGAAACAACGCGGGATTGTGATTACGCTTGGGGGAAGAAGCAGGGCAGAAGT---CCATGAGAAAAATCATAAAGTACTCTACCAA

a score=46745
s chr3           156746998 1378 + 160039680 AAGCTGCATTTAATCTGTAGTTGGAAGTGGGGAGGGTTCGGTTAACCTCCAAAGAGATTCGAATGCAGGAAGTGAATCTTGTGTCTTTTTATGTCCAGTTTCATCATGA--GTCCATCTGAACAACCAGACATCTACAGTCTGCAGAAAGGAACATAACAGG----ACTCCTTGGTCTTGTTTAGTTAAACATGTGGAAACTTCTGGAAATTGTGTGATGTTTGTTGCTGATG-CTGCCTCAAGCTGAATACCTCGCTCCAGTTGAATGCCACAGGATTTGACTTATCTCTGATTTTGAAAG--TTTTCTCTAATCTAGGATCTTATTGCATTAACTCCTCC---AAACAAGGGCAGGGGTGTGAGTGAAGAGGTTATTAAAGTTGCCTGTAAAAGCCATAGATCTTTCATTAACAATTTTGAGACAAGCAGAAACACATAAACCCAACTCAAGGAGATTAACAGGGTTAGGTTACAGGCTAATTGTGTTTTGAGTCTGAAATGTAATAAAAGTTTGTACCCTTTGGGGGGAAATGCAGCCAACGTTCATCAGTTTTTGCCATCTTTAATTCCACAAACCCTGGAAACCTAATCCAGAGCAGTGGTAAGGCTAGTTAAGATGATAAATTTCTAATTAAACAAAGAGCTGTCTT----AAGTGAGCAGTCAGGATGCAGATTTCAATGTGCCTCAGTGTGTTTAACCGTGTGTGTATGTTGAGG-----------------TCATGGTAG------CTGCTAGACTTGGAGGTAGGGAGCTGGGGTTATCTAGGAAATGCTATTGACAAGGGTGTAAATTATTAATATAGTAATTTCCTAAAAGCAATTTTTGCCACTTCATGAATACGAACTTTATGAAAATTTTATTAAAATTTTTCCAGCCAATTACTTTGTCAGAGGACTACAAGATGGATTCTTC-AAACCTGACTTTCTGACCAAGTCGTGATAAAATCTAAACTGCTTAAGGTACTGTCTTAGAGAGACCACAGG---------GAAATAAAGATTTCAAGTGCAGTAGGAACATCCTTTGTCTTCCT------------CGTGTGCTCCGTGCAGATGGTTTATGTATATAATACATCCAGTAGTAAAAATACAAC-TAATGTTTAACATTAGAGTATATGAATGCATTAGTCTTTTGTTTCATAATTATTGAGGCATGTTTGTTGAATGGATCATTTTCAATTTGCTTTAGACTAAAGTGGAACATTCTGATAAATATAAAAATCAAATAGAGAAGGCCATTGTTTTACTTGGT-CCTGTA--CATTGTCACTTAAGCCAT--------------AAAAATA----------------TGTATG---ATAATCAATTTTAACATATACCTGCCTAAATC--TGATAGTTCTTAAA----------CTCCAGAAATAACATTTCACTTGAAAGAGGATC------TGATATGTAACAACTTGTCATAAAAAATGAAG
s HiC_scaffold_1 143919952 1406 + 233722169 AAACTGTAACTTATCTACTGCAAGAGGGGGAAAAG------TCAGATTCTAAAGGACTACTTATCcatgaataaaatca-----atttttaaatccattctttTCAAAATGGTGTGGCTTAAAGATCAGAATTCTGGGCTT---AGAATTGGAAATAATGGATCATGCCAGTGGATCCCTGTTAGTTAATTACATAAAAATCTTTGGAAATTGAGTAACATGTATCGTTGGTGTCCATCTCCTGCTGAGG--CCTGCTCCAATTGAATGTCACAGAATTTTATTTATCTCCAATTTTGAAAGAGTGTTCTGTAATCCAGGAGCTTATCGAATTAACTCCTCCTCTAAACAAGGGCAGAGATGCAAATAAAGAGGTTATTAAAATCGGCTGTAAAAGACATAGATCTTTCATTAAAAGTTTCTAGACAAGCAGAAAAGCATAAGCTTAACTCAAGGAGATTAACATGGTTAGGTTAGAGGCTAATTGTGTTTTGCAACTGAAATGTAATAAAAGTTTGTACCCTTTGGGGGGAAATACAGCTAAGGTTCATCAATTTTTACCATCTTTAATTCTGCAAACCCTGGAAAATTAATTCAGTGCAATAGTATGGCTAGTTAAGATGATAAATCTCTAATTAAACAAGGAGCTATCTTCTTAAAATGAATAGTCTGTTTCTAGATCTCATTGTGTCT--GTGTATTTAACTGTCTCTGTGTGTAGGGGTAGAAGGAAGGTAGAAATCAGGGTAAGTTCATCAGGTAGA---GAAGGTAGAGAGAGTGAGTTATTTTGGAAATGCTATTGACATGGATGTAAATTATTAATATCGTAATTTCCTAAAAGCAA-TTTTGCCACTTCATGAATATGAactttatgaaaattttattataatttttccagCCAATTACTTTGTCACAGG---ACAAGATGGATACTTTAAAACCTGAGTTTCCAACTAAATCACATTGAAACTTGCAGTTTGTAAGGTTCTGTCATAAAGGGAACTCAAGTCTTTGTGTGAAGCAAAGGTTACAGATTCAGCA-GAATATTTTTGGTTTcactttgttttcaaaatgtaagtttcatcc--ttgtttcatttttctaacgCAATTCATAGCAAAAATGTGATGTAGGATCTAGCAT----GCAC---AATGTACACATCT---------------------------------ATGGAAAATTCTTGGTTTCATACTGAGCAAAGCCAACCA--------------------AAATAGAGGACATTATTCTTTCACTTTGTAACTGTAAGCATTGTCATTCAAGCTATCcatttaactattaaaaaataGCTGCCTGAGTAAGTTTGTCTGTGCATTTCCAAGTGTACTGAAGATCTGTTTAAgtcaatgataattttaaaaagtgttaaatcTGAATGAATGGAATTGCACATGAAAGAGCATCTGGTTATGATAAGTCACCACTTGAGATGCAACACAAAG

a score=11454
s chr3           156751374 537 + 160039680 GCACTGCTGTGACCTTCAGGACCTCTTAGAAATTGAGGGAGAGCAGGGCAGTTCTTAAATCAGGATGGACTGTGCTGAGGTGGAAACTCCACACCCAGAGCTTCAGATGTCTAGGAGAGTGGT-------CCTGCCTC----CTCATGGGGCTGGGGAGAAAGTTGCTGCAGAATGAATGACCTGCAAGTCCCTACTTAGTAGGCATGGGAGGACCCCTGTG------ACCTGAATCAGATCATCACTCTGG--------AGACAGGAGAAATCTGTCACTGATTAAACTTATAAGTGGCAAATAAAAGAACAGAGAAGGTAAATAGACTTCAAAACAAAAGTTAACTTTCACATCCTATTAGTTCATATGTAAAACACT-TTATGTGTAATGAAAAGGAACGGTTTTGTTAAAAAAAAAACAAATTACTGGCTACTGTGGTAGGGTAAATATAGTCTAAGGTCGTAGATCAGTGGGAATGTTATTAATGAACAAAGGGA-ACATTTGTTTCTTAGTATAGTAATGTGGTGACAAGCTAATGTCACCCTCA--ACTCTGAGGAGCT
s HiC_scaffold_1 143923895 541 + 233722169 GCACTGTTATCACTTTTGGAAACTCT--GAGTTTTTGGGATAATAAGGAGATTTATAAATCAGAATGAAATCCGCTGTGTGAGAAACGATAAAGCAACTGCTATGGG-ACACAAAAGAGTGACAGATTAACCAGAATCAGTGCACAGAGGATTAGCTAGAAA--TGCAGCTGTGTGACAAAC------------AGTTAACATGCACAGAAG-ACCCATGTGGAATCTACCTGTATTGAGccagaaaagtaattaaaaacagTCAATGGAACTTGGTGATTAATTGGACTTATTAGTGggcagataaagaaaatatactataaaCAGACTCCAAAACAAAAGTTAACTTTCACAGCCTATTAGTTCTTTGTTCAAGCATTGTTATGCATAATGAAAAGGAACTAattt-----aatacaaataaattaccAGCTaccat-acattttaaatataatcaaaGGGCATAGATCAGTGAAAATGATA-TAAGGAGCAAAGGGAGACATACGTTTCTTAAAGAAATAGCTTAATAAGAATCCACTGTTATTCGTATCACTTTGATGAACT

a score=13017
s chr3           156764763 755 + 160039680 aGTCAAATCTTGACCATGTTAACAATCATATATCAAGAAGTCTGGATGTGTTATGCAAGCACTGTGCTTTGAACA--AACTAATGAAGCTCAGAG-AGATTCAATGTTTTCTGAAGCTTCAATCATGAA-ACCTTTCTTGTGTACCAGTCACTGTGAGGGACTTCACAGCACACAAAGAGAGACAAGACATTTATTGCTGGAGT---------------TTATCTCA-----TATCTTATTTTTTTACTCTGCTCACTGAAATTTTTAGCTTTGGATTGTTGAGAAATGGAGACGTTTCTCCCCATGATGTGGTTAGCTTTAGT---GCTGGAAAGACAATCACACAAT-CAACACAGAATTCCCAGGGCCAC---ATTACCTCGTCAG-TCCAGTGGCAGCATGGGTGGCTGAATAATGCTCATCCCAGTGTATGCTGC----ACTCACCTTGCCCTGGAAGTCAATCCATGGCTCATTTATTCAC-TGCCATTCAGACCATTTCAGAACATGATGGAAGACCCACATTTACAAACCTCAAATAGCATGTAATTGAAAACGCATAGCCATCTGGTTCTGTGCACTGCCAACACAATGACCCCAGATTTTCCTTATAGACTGTACTATTCATTTTAGA---------------------------------------GGCCT---------------TATTTTGTGA--------TGCAACCTTTA-----TTTATTTTTAGGGTCAATTAAAATTATATATCTTTGGATATTTACCCTGATATAAT-TTAAAATTGTTTGTAGAAAATGTATAAGAAAAGTCTTTCAATAAACATTTAC--AGATTGCTTTCTCCCGCATT
s HiC_scaffold_1 143938812 821 + 233722169 AATCAAGTCTCAGTAATATTAAGTATTATGTGTCAAGCA------CGGTGTT-------CAACATCTTGTGAACATCAGCTAA---AGCTCAGAGTAGATGAGATATTTTCCAAGCCTCCAGTGCTGGACATTGTGTCTGCATACAAATCAGTGCAGAGAGCTTCAGATTGCACAGTGGGG---AAGTCTTTCATTTCTGGAatgttttccttgaaattttgtttcaaccattacattattaatttttaatgttcat----atttgttcttttgtgtcaCTGAGAA---TGGATATTCCTTCTCA-GATCTCTTCCCTTTAAATATGGCTAGAGA-ACAATCATGAAATTCCACCCAGAATTTCTAGAATCATTGTATTATTCCAGCAGGTGCTAAAACAACACAGGTGACTCAGTAGGGTAAATTCCACA--ATGCTGTTTCAAGTGCCCTTGCCTTGG--GTCAATACATAGCACATTTATTCAAGTGTCATTCATACTATTTCAGAACATGATAGAAGGCACACGTTTAAGAACCTCAAATAATATATGATTGAAAATACATAGCAGTATGGCTCGGAGCACTGCAAACATAATTACGCTAACTTTTgactgaaatatattttgttcaagttagatttaatttccatttatgtaGTACTGGGTtttaaacccagggtctcacaaaTTCCAGGCATGTTCTCTAACACTAAGCTACAGCCCCTAGGCCCtgactttttaaag----ttaaaat----tgttttatgataTTTGTTCTGAGGTCATCTTAAAATTGTTTGTGAGTAATGtataagaaaaatgtataaacaaa-atttacttCAACTCCTTCTTCCAATATT

a score=32721
s chr3           156768542 4525 + 160039680 [encoded data, 5001 characters]
s HiC_scaffold_1 143942465 4367 + 233722169 [encoded data, 5001 characters]

a score=38959
s chr3           156773873 2206 + 160039680 gggagaggagaagagaaggggaaagaaaagag----agaCACAG----TTACAGTGATCTCCAGAGTGA-------GTTAATTAGAAACAAGGTAAGAAGTAAATATTGGAAAATGTTTTTTCCAACTCCTGTCCTGCTTGTCTGAGAGGAAAAACAGTTTATACAGCACAGTGGGTGGTCACACCTGCGTGCACAATAGAGCCCCTTCTGGTGTTTTCTGAGTGTGGAAGACATAAAACAGTTAGAGATGGAGGCAGTGCACCTGTGTGCTTTTGGCCATGACCACTATGTACTCAA--TGGCCAAGTGTTC-CAGACAGGAGTGTTCTGAATCTAACTTTACATAAAAAGTGAGGCCAGCTT-------TTCTATCTTGCAAATTTTG----AGAGGCCCTCTGCCCCACAACTAGATCATGGGAAAAAAATAAGTGCATGGACGAATCCGGTTTCATCCCAGCTTCATGAAATACATACAGTGATTGAAATGTGTATCCTGTAGTGGAAAAAATTAATTTTGTTCTTTTTTCTTATTTAAAGTAAAAAAAAAAAACATGAAaattaaacactaactctgggcagccagctatgctggataattgaagcacagcttagatgacatcaagctgagct-gatgttgagtggcttcatccactttagggacatgagacagtcc---agagatgtgctgcctggtgtggctgtgttaatgttttgaaatggaattcataaaga------gaactgagTTGGTCTTGTCTTTTGTAAGGCAGCACACTCAGCACACTCTGAAACCTGTCAACTGAGTGTGGAAATATCAGCTCTTTAAAGCTACTCTGCTCATAAACCCAATTAGATG--------------------------------------------------------------CCATGTATT------------------TTTGATAT----------------------------ATCAAAAGTTTGGTAGATTTCTTGCAGCCAATTACGTGATAAAAGCTAAACAATCGATTGTGAGGTGATTGTTGCCACTAATGTGGTTAAAATTTAAGAGCTATGAATCCACTTGCACCTGAAGTACTGAAGAAACTGCAATGAGCATTTTATACCTCAAGACACGACACAGCGACATTAATAGAAACGCTTG-CAGCAGAATCAAAGTCCTAAG-TGAACAGGAATTTCCCCTTAACGGAGCTTTTAAACCTCCCTCCA-TCATCGCAGGGTAATAGCTTGGCAGTAATGCACGTTGTTAGAGAAGCAGGTGCCTGCACAAATATTAATCTTACATTATTGCTGCT-AATATGCAGCTGATTTGAATATTAAAATAGCCCAAAGGCTCTTCAGC--ATTATGTGATT-CTGAAACAGCAACAGTTCTCTCTTCATGTAAGGTGTGCCTAACACATACATTGAGAGATTTCATAGTTACTTAAGTTAAGTAAATGTATTGATTTATAATGGTGACAAAGCCTAAAG-TTAATTTAGTTCTTATGGAAATGCCCTTGCTATTATCTTCAGACTGTCTCTTAGGTGGTAACAAAATCTTGAT-----CATGCCAGTTGTTTAA----CCTCAGAAACTTTGCACAGTCATCTTTGTGATTCCTAGAACTACTGATATAAATTCAGG---------------AATAAA----------------------TTATTGAATAACAGATGCTA--ACACAGAGTGAGCTTCATATACAAGACTCT-------GGAAATACT----------TTGCAACAAGATTTTAAGACAGATTCTGTTATTTCTACTGTGTGAATAAGGAAAATGTGCAATGACTAAGTCTAACTTATTAATCTGAATGAGAGCACACCGTGATGCAGTGTCTAAGCCTAGGTTATTGTTAATATGAGCAGAAATCACAGCTTAAGCTCTTCA----TGATGAATATATGATGAAGACAAAT-CGAATTAAGCAAGAAGATTTATCAAAGGGAAATATACACATGTGCGACAGATGGCCAGATGCAAGTGGCTGTACTTTGTATGGTGAGCAATCTGTGGACTCTCCAAGACAATGAGAGGAACTGGAGGAAGTTA--------TAGCCATGAACTTGAGTCAAGGCCCCCTGCTTCAGAACAGGTTCTGTGTGGGCTAGAAAAGAATCCTTAATGATAAGAAGAGTTGGAGAAGCTGAAGAATTTGGCTGAGGTGTGTTACCTGTTGCCTCTTCCCTGAAACTATATGCTGGGAC----GATCAGGAAGGGTTGGCTCATGTGATTTGGACATTGGCAGGTATTATGTATGACACCTTCAGATTCACGCTCTGTTCTTTATTGTCCACACCGTGCTGTCTGCAGCCCTTTGTCCTTCTGTGTCCAACCTTGGCATCCTTGCTGATTCCACTCTTG
s HiC_scaffold_1 143947879 2349 + 233722169 ggggaaggaaaggaaagtggaaTATAAGAGAACTTAAGACACTGGACATGTCATTTTGCTTCACAGTGGACCAGTGGTTAATCTGGAGCAAGTCAGGAAGTAAACAT-GCAGAAcactttccct--ttcccttcctcctcctctaaaAAGAGCCAAAATCCATCCTCTGCAGTGGGTGATCGCACCTGTGTGCACAATGGAACTCCTTCTGGTGTTTTCCACGggctaaagaaataaaacaatggtGGGAGGAAGTGACACACCTGCGTGCTTTTGGCTAGCATGACTGTGTACTGTACCTggccaaatattttcaaataagtgTATTCTGAAGTGaattttacataaaaacaaacaaaaactccataTAATTCAATTCTGTTCATGTTACTCCAGGGTACTTCTGCTTTGTA-CTATCTGTGCTAATAAGAGCGAGTAcaagcaaacttttttttttctcccagcttTCTGAAACATATGTAGTAACTGAAATTTGCATTCTTTAACAGAAAGACCgcattttgtt-gattttcttgtttaaggtaaaaa----------tacaattaaacaataactcATGGCGGGCTGATGTTCTGGACAATTATAGTACACCTTGGGGGGGAT--GTCTGAGCTTGAATCCAAGTGGTTTTATCCACCTCAGAGACGTGTAATAATCCCCCAGCAATGCACTGCTTGGAGTA-TTGTATTaacattattaaatttaattcataCAGACAAAGCAAATTGTGGAGATCTGTGCTCTGACTAAACAACATACATATGGCA-----AAACTT--TAAC--AGTCTAAAAAGTCATATTCTTAAAATCCGAGGTGTTCAGCAGCCCAGCTGGATGTCTCATGCAGGGGCTGTATCTCATCTTGTAGGGCTTGGAGACACAGTTTAGTGGCAAAATGCCCATGCATGGGATATGTGGGATGGAAGTTTAACATGAccaaagtaaacaaaagaaatcaaagcagcAAAAGTGTGATATATTTCTTAAAACCCACTAAGtgattaaaatgaaacaatagatCACAAAATGATTGCCCATGTTACTGTGGTTATAATTTACAATGCATAAATTTACTTGAATGTGGAATACCAAGAAGGCAATGACTAATgttttgtacatttaaaaat-----agcatcGTTTAT-GAAATACATGATATCAGAAAAAGAATTCCACCCTGTATAGAAACCTCCCTTTGATGGCACTTTAAAAACGTCTTTCAGTTATAGCAGAGTAGTAGCTTGACTGCACTGTCTGCTGTTAAATGAGCAGGTGCCTGTACAAATATTAATCTTACAATATTACTGCTAAATATTCTGctgatttgaatattaaaatagcccaaagatttttcaataaaatatgtgATTACAGAAGTAGTGAAGTCCCTTTTATCATACCAGGCATAACCCTTTCATCTATTAACAAATTTCTCAGTTGcttaaattaagtaaataaattagtTTATAATAGTGGCAAAGCTGCAAGTTTAATTTTGTGCTGACAGAAAGTTTCTTTCCATTATGCTTGCACT-TATCTAAGCT-GTAACAGAATCATGATTCTAACATTTTAGCTGTTGAAATTTCATTACAatctcttga-atttattttgttaatttttgtttttattggtccaCATTTGCGGCACAGTATGATTTTAATAGAAACGTGATTTTTGAGACTAATCttcctaaataataataattaacacACAGAATAATTTTTGTGTGCTACTGTCTTTTCTAAAGAGAAACTGAGCTGACCAGTGAGCCAAGAAGGTGAGATTtat--cattattctcattttataaatgaaggaaCTGAGT-----CTGAGGATATTTCAGCAAACCACTGCAGATTACCGAGCGAAAAAAAGACTAA-CAAAAGTTGTAATCAATATGGCCAGAAGCTATAGCTTGTACTCATCCACATTGAAACATGTGTTGTAAAGACGAATATTAGGTAAGCAGGATTATTTTTAGAAGG-----ATGCATATATGAG----------AACTGTAAATAGTAACAC-----------AGCAA--AATGGACCCTTCATTTTAGTGTGATAAATGGAAGAAAACTGATGAAAGTCAACTATGAACTTGCATCTTGGTAACCTATTTTACAAT--GTTCCTTGCTATCTAGAAATGACTC----ATGCTAAGTACA----GAAAAGCTGGAGAGTTTGATTGAAACTCCTTATCTTTACTGTTCTCCATGCCAGTGCCAGATGAGACTAGAGACCACGAGCAG--------TGTTATTCTGGAGACGGCAGGTGCTGCATGTT---CTCGCACCTTCCCACTCAGTTCCTTTTTCTGCTCACTAACTTCTCCTGGGTCCCTAG-CTCTCTGCTCCCAAATTTGGAATTTTCTCCatgttcatttctg

a score=45886
s chr3           156779797 2453 + 160039680 TTTTTAAATGTTATA----CATAGAATATAAGTAGC-TTATGGCTTTTGTGATGAAGTCAATATGATATTAAAACTACTACATGACAGAGAAGTTTA-CAATATGAATAGCCAGGTATATCTGGTTTCTAAACTGACATATAGTCATTTTTAAAAGAGAAGTCATAT---TTTTTTAAGATATAGGTCTTGGTCCATCTTTAGAAAAAGTAATATTCAATTGTTTCTCTATATGTTTCAGGTGTTA--TGATTTCAGAAGA---ATGTATGAGCATGCTTATATAACCTAATTGGTTGCCTTGAAGGGAGAACCACTTATATCATGTTAATG--------ATCCTCACAAACCCTTAT-----TTTCCATTCTGAAATGTTGGCACATCAGTGT---------CTCTAAAAGGCAAGTTTACAAGTGTCAGGTTTTGCATTAAGAGCAGTTTCAGAGATTTGTAACTGTCAGGTTCAGGGCCTGTGAAGCCTTCTCACATCTCATGAT---GACAGCCTCTCCCCTGACTACAGCAA---------TGGGTA--GGAAGGATCTTGCT---GTTTATTTGTTTTTT-------------------CTTTTTGATTTTAAGAGGAAGTTCATAACTACCTAGGAAAATTAGTTAGAAAACTTGCTTGTTAAGAG---ATTAGCTAAGTAGTAAGTGCAGTGCTTGTAAGGCCTG--AAAATGGACCAGTGGAT-TAGAATCTTCCCGGGGACATATGCTAATGGACTACAGTGGTGTGCTTTTCTGTGACAGAATTTACCAAGAAATTGTTTTTTAAAAGAAATTCTTTTTAATTAGTTTATTTGCCTCCCATTATTATTTTGTTGCTCTGCTTCTATTGTTTACCAGAGGTTTAAAAAAAATCCTTCAAAATTGAGCAATCACAATAAAATTTAGTTAATTGTTCTGTTTTGGACACAGGCTTTTTAC---CTAAAATAT--TTACTAGTCTTTTATTCAGTCATAACACATGTAACCAGATGGGTACATCTGAGAAATCACCTGTGTAAATAAATATTTTAGTCT----AAATTTT----ACAATGGTAATTTTTCAGTGAAAACAAATACATTTATATTAGAGCTCGTTATAAATAA---TATCTTAGGTTATATTTTAGCATATTTAAGGCTTTTAAGGATTATTTTTTAACATCTTCCTTCCTTCCTTCTCCCTTTTTTTCTTATATCCTGTGtgtatgcatgtatgtggatggcctggcatatgccacagagcaccggggattgttagagggcaacttgcagggttcattcttttcttt--------ccactgtgtgggaccaa-aagattgaa---ctttggttgccagattgggcagcaa--gtgccttta---taggcagaggcatcttgtgggATGTGAAGGACCATTTGTAACACTG-GGAGCTAAGAAGTCTGCATCCTGGTTGTCAGCAA------ACATCATCCTGACTCTGTCGTTGCCTTAGACTAAGGAGTCCTTTTCTTTAAGCAGCTCAGTG----TGTCATGGTAGGAGGGGAGCATCTTGTGATCTGATGGGCAAGTAGAATAACACATAGCGGCATTTAGTAGACTCAAGTACTCCTAGGATACCATTTTTGTTGGTTAATTAAATGGTTTTCTCTTTCATTTTAATGTCTCTTGATCCTCTGTGTGTATGAAAG-CTTTGCATGGCTCAAGTCTTTAATTTGTTATTCCAGTTACTATTGTT---GTGTTATTTATTAAGAATCTTTTTTCATCATAGTGTTTTAAACACGAAGTGTAATCTAGCATGGAAGCCTTACATTAACTTTAAAAACCTCCTGCTTTAACTTACAAGATATTT---CTAATCTCATTATAGGGGATTTAGTGCTATGACTCTCATT-ACACAAAAACAAGACTCCTCGCCTCTCTGTATGGAGAAATGTGCTCCTGCATTTTAAAGACCACTAAGCCTCTTTAATATTCCCCTGATAAATCAACTTTGAGGATTCCTCCAGCAGATAGGTATGGGGAGAAGCTGTAAACACTTAGCTCAGAGGTTACAGACACATGAGCAAATAAAATGAGGTAATTTTATTTGTAAAGGA--TTTAGGTTTAATGTGAATAAGACATATTT---GAGCTCTGCTCAGGCTTCAATACCACCATGATAAAGATGAT----------------CCAGTAGCCTCTGCATGGAGGACTAGAATAACAGCTGTTTTGTATGTAGAGGTGCTTTT----ATACACAAGGCTGGGACAAACATGAAAGCCTATGAATCCATTAGCAAGAGAACGTGCTTTCTTTCTCATT---------------TTGCT------CTTACATCTTCAGCTGTCTCTATTGTCTCAGGTCATCATAAACCAAGGGAAATGATTTATGAAGATTAGAGAATATATAATAGAATGGTTATGATATACAAATAATATATTCTTACTAGTTTATATATATTTATATCGTTATAGTATCTTTGTTGTCTTCTAACATTTGGGTAAAATTTGAAAA-CCTACATGTGGCTCATACACCTTAAGTTAATTACAAGTTTAATGGGCTGAAGTTGTTTAGTTTTGA
s HiC_scaffold_1 143956636 2362 + 233722169 TCTTAAAATATTGTAAGTGCATAGAATTTGAACAAAACTCTGACTTTCCTGGTGgaattaatactaaatttataata-tatgaGACATTGGAGTTTAACAATGTATATGATAAGTTATATTTGGTATCTGATCTGAAGCAT-----TCCTTAAAAGgt---tcatatacatttttatttgtttggatcATAATTTACTTGTAGAAAA-GTGAAATTGAATTGTTTCATTGTAACTTCCAAATGGAAAATCATTTTAAGAGTTCTATGAATAGGCGCCTTTGCACAATCTGATTGGCTACCCTAAAGGCAGAACCAATTATATTATGCTAATGTGCATATTATGCTCAGAAATTGTAATGGAATTTACCATTATA--------GTACATCAATGTATATTGTCTTTCTAAGATGTAAGCTTATAGCTGTCAA-CTTTGCATAAAGAGAAGTTTTAAAGGTTTGTAATTGTCAGGTTTAGGGAGCTTGAAGCATTCTTACATTTCATAATAATGACTGAATCTTTCCTG-CGACAGTAAATACACAGCTGAACACCGTGATAACCTTGATTAAGTCTAACAAGGCTGTAGGAGCATTCAGAAAAAGGCTTTTGCATCTTTATGTGATGTTCATAACAACCCGAagaaaattatttggaaatttaCTCATTAAGAACTTACTAGCAAAGCATT--------TGTTTGTACTGCCTAGTAAAATGAACCaacagaaatttcattttccCAGGGCATCGAGTTTATGGTCTAAAATGTTAAGGTTCTTTTTGACATA-TTTACCAaggaatgttatttta-----------tttta--tggctcatctg-------------------------------ataatttaaaa------tgaaagatttccTTTAAAATCGAGTAA-----ACAAAATTAAGC--ACTG--CTATCTAGTACAAGTGCTTTATAAATGTTAGAATATGCTAAATATCTCTTGCttcaactaaaa-----------------acaaaactgaaaa-------tagaagcTACACACTATagacttttcaaattttctttatgatgGTGAT---------AAAGATGATGTGATTACA--AAACTCCTTTGTACATAGACTTAtctcaatttgttttt---------------------------------------------------------cttttttcttaagaaacTAT------------------ATAGTTTTGTACATG-----AATCACCGGTGC------AAGGAAAAC------GTTTTATTCTAAACTTTAGCAAAGCTAATGGTATGAAAtaaggaatattaaaaatttttatattagagCTGAGACAAAAGTGGTGCTCTTAAGATATAAAATAGCTCACTGGGGACTTTCAGGGATTATTctcaatacaatgaaaataaggCACATGCACTTTGATAATAAACAATTCTTCAgttctctatgtctctgtctatgatcttgttta-----ttcttttgtttaagcAATACAGTGAGTGTATCAAGGCAAGAA---AATATAGTGTAATTTGATAGAAGAatgcaataaaatataatgaCATTTACTACTCCCTAATACACCTACGTTA---TTTTTGCTAGTTCATTAAATGATTTTCTCTTTCACTTAAATGTTCGTTGATCCCCTGTGTATATGAAAGTCTTTATATAGCtcaattctttaatttcttatttcagtaATTATTGTTCTTGTGCTATTTATTAAGAGTTTttt---atcaaaatgttttaaacataagATGTAATCTAGTATGGAAGAtttatattaactttaaaaatttcttgcttaaatttacaagattttttttctaatctcaTTATGAGAGGTTTAGCTGAATACCTCTCATTTACACAGAAACAGG------------TCGGTGTAGAAAAATTAGCATCTGCATTTTAAAG--CACTAAGCCTTTTTAATATTCCCCTGATAAATCAGCTTTTAGGATTCAGCCAGCAAATAGGGACAGGGAGAAACTGTAAACACTCAGCCAAGTGGTTATAGATACATGagcaattaaaataaagtaattttatttgtgaaagagGTTTGGGTTTAACTTAGCTCAGACAAGTATTGAGGGTTCTGCTCAAGCTTCaacagcaccagcaccagcaccagcaccacctCCACCACACCAAAACCCTCTGCA---AAAACGAGACAGAAAGAGGTTCAGGCGTTAGGTGTGAATTTTGTAGCACACA------TTACAATGATGAAAGCACCGTAATGCAGTGAACAGAGCATGCACAGTTCTTCTTAATGAAAGGACCTGAGGATGGATGGGTGATTTCCTTCTTCAGGTGTTTCTATTATTTCAGGGCAATTCTGTC--------ATGactgatgaaaatgaaataacatttaaTGAAAGGAGGATGGTACAGAGACATTTTATTCTTACTAATT--TGAGTATTTCTATTGTTATA----TATTGTCACTTTTTAAAGTCACAATAAAGTTAAAAGATTTTAGAAGTTGTCACTACTCCTTAAGAGCTTTGCAAATTCAGTGGATTTA--TTGTTCATGTTTAA

a score=3744
s chr3           156783560 67 + 160039680 AAGGGTGTGTGAGCAGGTTAAATTCAAACATGATATCATTTTATGTAAGAGATTTGAACATCTGTGG
s HiC_scaffold_1  19369175 67 + 233722169 AAAGGACTGTGAGCAGGTTATATACAAATTCTACACCATTTTGTATAAGAGATTTGAATATCTGCAG

a score=15739
s chr3           156785765 2330 + 160039680 GTTGTCCACACATTACAGACATAATTACCAAGTGCCATTAATGAGATAGACACAATT--GTGTTTCTAAAAGTCAGTAGGTCAAACAAATAAGTAAATAAACGTATTTATCCTCCTGATAAATAGGCTTCCATTATTACTC-AGTGGTCAATTCCTATAGATTACTAAAATTTTGTAAATATATAGTATCTATGCCAATCTGGGAATCATCATGAAAT-----TAAATAATCTGTGTTCTTTTAATTCAGTGTAAGTGAAATTGTTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCGCGCTGATATTTAAAGTAACATCCCAATGTCATTTCAAAAGATACTTTCTCTTTTAAAACTATGACTAATTAAAAGAAAACCAATTATCTACAAAAGAAAATAATTAGATTGTAATAGATTTGCAGGAAA----TACTGAATCTGTCTGCTGTGAGCTTTTCCAAAG---GCA--AAAAATACTGCTGAGGTGAAACTTCTAAGTTATCTTAGATGATAAAA-ATGTTAGATTGTTTAAAACTTCATTTGAATTTTTGCAGAAGCTGATCTTTCA--------GCCCCCCCCCCATTCTCTCAGTAAACATTCTTCAAAGAGATAAGCTGTCAAGCCCTCCACTAAGCCCTAAGGTACTAACTAGGGCGTGTTTGATGCTCTTGGGAAGTGTCTTGTGCT---------GTAGATAGAT---GGGCT--TGACAATTACCAAACCAAAGGTCATCTGAAGTGTGGACAGCACA-CTGCAGAAAGTTGGTAAGGCTAGACTCTG-CTCTACCTCACAGCTTCCCAATCCCACCATGCTTTGTGACTCTGTACCATTCAAGCTGTTTCATGTCAATTGACAAAATCTGCC--TCATTCCTGTTGTTTATCTGTTCACTTCTCTTGATCCTCTAAACTCTCCTTGGCTTCTA-----------CATATGTACATCAATGGATAGAATAC----ACTTACAGCTGTATGTATTCATGCCTCATGGCAGGGTGTTC-ATGTCCTCTCTACAAA------ACCAAGCAGTTATGGAC---TATGAGTGACTATATGAT----------ACATAACAGCAATGTAACATATGGGATGAATTCAATAAATC---ATTTATTCTTTCAGACTCAAAGCTAA--AAAGAAAGTAACTAAATCCTTTGATGAATAAATATGTTGATAATTTAGGTACATTGGAGAAAAACAAAACTAAACTAAACAAAACACATAAGTTAGAACTGGGTAGGCACAAAAATAGAATTTCCAGAAAGG--------------------------------------------------------------CCAAACCACTTATAGCATGCAGCAAACATTCTTGTGTTGAACCCAAACACCTCAGGCTTAACAGTGTGGGCTTTTGTAAGTAGCTGT-TATCAACT-------------------TCCCACTAGGTAA---------AAGCACTTACGATTTAACCATCATAAATCCTGACTA----TGCCACCTTGATCTGTGATGTTTTTTA-AATTGTACAACCTTCCTCCATATGTTGTCTTTC------------AGGTAGTTTTCATGCTTTTTGTATTTTGTGGGGCCAATAGATGTAGGAGGGAG-GGTGGGTTGCAAAGGCACCTACACCTTAGTATATGGCTTGATTATTGATTTCAAAACTGGAACACCCCA-ACCAAGCCAACTTCTCTAAT--TCAGCTTCTCTGACTGCG----AGAGGGGCA----------CGCATAGA-----GGGGA-------------AAGT-GATGGGCTG-----------------CCATAATTCAGCC-------------------ATGTTCTGGGTGATCTTTGATAATTACAATAACATTACTGCCAGGCCTTCCGGATTCCTAATGTGACATT-CTCTCGTGTTTAGCTTCCTTATATTTTATCTCACATTT---TCAGTTAAATCCCTCTTCTTCTTATGAAGTCAGCTTGGTTATTATTTCTGTAACTTTCGACCCAAATCAGCCAGAGACATGTCAAGAAACATGCTTAATTTAAACAGGCA-TTAAATATaaaactgtaagatgaaatggtctcagaatgaaggctaattctctaaattgagaaaattagcttaaagtaaaagccg-cagttgctggttttgctcttctctttccctgtggacaagacaaactctcagt----------atggatctttactattcA----ATA-----GGAGGCTACCGTCACGTCACACTGACAC--TTTGACATTATTGTGGTTGTGAAC--------TCCTGGCCATCTT-------GTCCATGGTGGAAGT---AGATGTGCTGAGCAGTACTCACAG--------TGGCCTGGCTACG---TGACACAACTTTTAAAACAT-----GTTAGGCATAGGAACTCAGAGTTCTAGAATAATAAAACACTTATTTCA--TAATCATATTTTTTTAAAAAAACACATGTGTTTATTTTAAAAAGAAGTCAGACAAAGAGCTATGCTGTGTACTGTACATGGTTTTTAAGATAAAAAATACATTTCTAATTTCAGTTGTACTCATTAAAGCACCAAA
s HiC_scaffold_1 143961163 2475 + 233722169 GTCATTCACCAACGGTAGAAATATTTACTTGATCCTTTTAATGAACTATATAATATTCCAGGACTTCAAAGATCAAGGG---AAAtagttatataaa-aaatatatttgcctttATAA------GGCTTGCATTCTTATCCTGGTGATAAATTTATGTAAATGATTATAGTTTTGGAAATA-AGAGTATCTGAATCTCTTTGGCATTACTCACAAACTGGCTTTAAAGAATCCTTCTCCCT--AATTCAAtataattaaaactttatttt-----------------------------tgtactgctttccaa------------------ttttaaaagtt--ttttttttataaaactatgACTAATTAAGATAAAACCAATTTTCTGCAACAGAAAATAATTGGATAGTAATGGATTTACAAGTAATATGTACTACATTGGTCTTAAGAAAAACT---CAAAGTCTGCAGTATAAATTCAGCCACAGTGATAGCTTTGGGATATC-TGCATGGCAAAACATGCTGTATCATTTCAAAGTTCATTTGAGTTTCT-CACAAAGTGAGCATTCATGTATTTTGCCATCTACTTACTCATCCTGCAAACATCCTTGGATGTTAGAATTTACCAGGCGTTTTGCCAAGTCCTAAGGTCATAAT----ACATGTTCTCTGCCCTTAAGAAGC-TCATTTGATCATACGGGCGTAATTATATAAAGGAATAATGATGAATATCATG--GAATGTGATAGTAAGCAGAGGTGGCACAGTTGAAGATAGCACGTGAAACTAGAATCAATCCCTGTCCTTTAACTTACAAA-CTCTCCATGTTTTGACATTCTGTAGCATTCATCTTGCTTTCGGTAAATTtatatagacttttaaaaattccagttaTTTTTCTACTCATGCTGTCCAATCTTTTAAACTCCCTTTGGGTTATATATTTaggtattatatataatataatatatattatatatgaactTATACTTCTGTATATTCA-----CATTGAAATGCATACTATATTCACTCAACACATATTTTGCCGAATTatgagaaacatttaaaaatgacctCAAGAGGGAATAatcaatatgaaaaaaatcaaaaaca------aaattcagtacATCCAAATGTATAACGTCATGCTCAAAGCCTGCTAAAGAAGCTATACAAATTC---AGTTAAGAAACTTGGTTCTAACTGAGGTTC--------------TAACTGAGGCACA-AAGACCCAGAAGTTTTCATTAAGTGAATCCGAAACTGGAGTCTGCCGGAAGGTTGGTATTGAGCCATCCGGTGATTTTTCATTGAATGTAAGTTGGTGAACCTCTACCTTTCCTCCAGGACAC-----GGATATAGCAGTGGTTTTCAGAGTGAATCCAAACTTCTCAGTTCTTGGTCACTGGCCTTTCATAAACTGCTGTCCATCGTCTAAGCTTATGGGTTATTTTCTCCAAACAGGAAAGCAAGGCCCGAGTATTTAAAAGTAAACCACCTTCCATTCCACTCAGTCCTGTTACCTTTATCTTGGAGACTCCAGACACCTGCAGAGGTTTCCCTGAACTATTCCCCTTCCTTTTAACCCCGGGATGGGCGCCTCCCCATTTTCATTTTGGGAGACA-------GCACAAGAGAGCACTAGCTTGCAGAAGTACCTGGGCCTCCATTTGAAACCCAGTTATTCTTCTAACAATTGTACCACCTCAGAGGATTTCaccttctctttttctcag-tTCTCTAACTGTAAAATAAAGATGCATTGTTCATCTCACATAGACTTTTGGGGATTTGTGGGCTTTTAGGTGGATTGGCAGAGCGTTTTTGATTAACATCGTGATTTAACATACTATTAGGGTGCAATGGATGTACTGGATAAT-TTCAGTGCTTACATTAAAAT---CGTAAAATGCAGTAGA-TAAAAATGTTACTTTCCTCTTACACCTATATGTTTCATACCCTGT-TGTCATTTTGGTCAGTCCagtctaggtttttttttt-------------tttttttttttttaa--tatggttcAAATCTATCCATGACACATCAATA---------ATTTTAATAAGGCATTTCCATTCAAAAATGCAACATGAAATCATCT-----------CTAAC-------ACTGAGAAAATTAGCTTACAGTAAAAGTCACCACACACTATTcttcttctgctttttctctttggaC----CACAGTGTCAGTTTAAATTTGCATAAATCTTTAGCATGGATAAGATAACTTTGGAGGCC----TGGCTTTACTCTGATATTGTTTGACATTACCTTAGTCATAGACTCTAAGATTCCTGAAAATATTCATATCAGATCAATGTTGAACTCTGAGAAAGAGTGTGCATTGGTCACTGTTGGTCTCTAGTATAACTACAGTTGGATGCAGTTATTAATACATTACAGTCTAAATACATTACACTACAGTTATA-AATAATCAGATCCTGACCACAATAAAGTGTATATTTTTTATAActagtatgtatttattttagcaaaaggt-----aaaatgTTATGTCAAACACtataaac-atttcaaaaagaaaaattgaat---taattttgtttatgcacataaacataataaa

a score=43587
s chr3           156789727 5423 + 160039680 [encoded data, 6592 characters]
s HiC_scaffold_1 143964343 6217 + 233722169 [encoded data, 6592 characters]

a score=26652
s chr3           156795903 2156 + 160039680 CTCTGT--GAGAGGTGAGGATGCAACAGGGGCTTCTTAAA-GCAGAGTTGCAGCAACCTGTTAAAGGCAGCCTACCCCAGTTATAGTAAG----------TTGCCTCACTATACATCTCGTGAT--AGCCTAGAAGAAGTCAGGAAAATTGAACCTGGGGCCACTGCACAGTATTTGAGTTACTAAACTTACCATTATCAGTGGAACTTCTCATGCAAAGATTCTGTGAGTGGCTGCCTTGCTCTCCCTTGTCTCATTATGCAGCTAGACACTTGGCTAATTATTGGGAGCTTAATGTCAAATTGCATAACTTACCCGACACATGTGGCCCCGTCGTTCCTCTGGGACACAGAAGCACACTTCTTGAGCAACGCACTG-----------CCTAGGACTGAATGCCAGCAGGCCAGTTGGTTTGTGGCACTGACACTCAGGAGGGGAAGTAATTATTTTAGTAAAACATGCATCACATTTTATGCTAGAGAATTCTAATTCTAGGATTTTAAA----------------TGCTCTGCCTGTGAAACTTGGAAGTCCTTCTCTAGGCAAGCCTTATTTTC--------------------------------ACAGGTTCTTGGGTGCGGGCATAGCTGGG-ACACTTTCATAGGCTAATGTAAGTGGACAGTCAGAAGTGCCAATGTGCATTAGGAAAATGGGAATCCATTCTGCTTCACGGGTGAATTTGCTCTTCTCCAGAGATGGAATTTATTTGCATATTTTATTTC-AATATATGTGAGTT-CACTGGAAAAGGTTTGAAATTAAATAAATTATGTGATTAGATGGCAGACATAATAATGGCAAACCTGGCAGCCCATTGCGAATTTAGCTTTCCAAAGGAATTTAAACCGTTGATAC--ATTTGGTGATGATGACACCTGTCCTGTAAAAAGCGAGTGCCAGGGTGCAGAAGTGCCTGGGAGACTGGAAGGCATGTCTAATAAACTCTATAATCAGCATTCAGACATGAGAGAACATAGGATATACACAGTGCAGTGGTGAAATGCAGGTGTTAATCATACAGCCGGGTTTCCTCTGTGATTTTTCTGCCTCTAAACATC-TTTCCTGCATCG----ATATGTGTGATCATTTAAGACAAAAGCTGGTAATTACTGGAATCACTAAAACCATATCTCAG---GCCACTAAGTTGCTTTTTAAATGGTGGGAATATGTAATCCTGATTGACTCATGGGAAACTACATG--------------GAAAAACAAAACAA-CCAACCAGTCAGATTCT------GTGTTTTAACAACCGTCCTTTATGTATTTCTGAAAAAAAAAGAAAAATCCAGATACTTCTAACGTTAAAGCAAGAGTTACCAAATTTAAAAATAATTAGTAATGTTGATTCTCTGCTGtaatttttaataataataatttGTGAGGGCAAAGAGCAGA-----------------------ATTGGAAGTCACTTGAGTGAGGATGCATAGTTAC-TCTTAGGTTAGCATTGTCCCACCGCTGACTTCCTGACTGTGATT--------------------TGTGCAACTTTCCTGAGTCTTGATGTGCGGTGGTGTGTTCTGAATTCA-------------CTATCTCCATATTTTCCTCTCTCATTAGTTATCCACAGGAAACAGGTACTGCAGC-ACGTGCACAGAACGTGAGAT-CTCAGTGACTCATTGTTAGT----GCTCAGAGCCATT----CTGTGTCCTGGCAAGACCATG-CTGCTTAATGGCAGCT---GCCTTGGCTG--------TCAGGCCTTTACCTGAGAGGAGCAGCCAGTGAGTGAGACTG-GCAGAAACTCACTCATTTCAATGTGTTACACTTAGCCCAGAATCCAGAAGGAAGAAGGGGTGGTGAAGTTGTCTCCGAATGAG--CACCATGGAGTCTGTTTCTAGGTGTGCCACAGACAGTAGACAAATTGTAAGA--TCTGTCTTT--GTTTCCTTCCTATTAATCAAATACTAA--GTCCTTGGACTCAATATACACAGATCTCTGGAGCATTGAAATGATTATGGAATGACTTTCTTTTCCTAATTATCACATTCTAAGTCAAAGCATTATTT---GATTTTTCTAGATATTTAGAAAAAAATTTGTAGATATTTAGAACATTTTT---------AAATTTTATCATAGCAAGGAAGTTATG------------GTGCATGTATAGATCACATCTATCTACCCAAAAGGCATGACAATCAA-----TTTATAATACAGATATAAA-TGCTTCCAGTTATTAC-----AATttcttcttctcctcctcctcctcctcctccttcttcttcttcttcttct
s HiC_scaffold_1 143970780 2246 + 233722169 CTCTGTTAGAAAAGCAAGGATCCTGCAGGAACTATTCAACTGCAGGTCAGGGGT--CTTGTTAAAGGCAGTCTAACCGTGTCTCCGCAAGCCTCTGTGTTTTTCTACAGTTTATTTCCTGTGGTTAAATCAAGGCAATACTTGAGAAATGGAGATT----CACCTCCACCTTACTTGGGTTGCGAACATTTGGATTTTTAGTGGAACTTTTCTCCCAATG----------TAATTGTCATGCTCTCCCTCACCACATTCTGTGGTGCTGTCCCTGCCTAATTCCTGGGTGCTTCACGTCAGAACTCGTACTGCACCTGAGAGGTGTGAACCTTTTTTCCCCTCACGACAC------------CCTAAGCAGCACTGTGATGGTTTTTACCTTAGCAC--AGTGGGAATAGGACACTTGTTTGGTGTCACTGATACTTTAGAGGAAAA-TAATTATTCTGATAGGACA--CATTACATTTTGTGGTTGAGAATGATGACTACAGGCATTTAAAATGCGTGCAGTGTTTCTGCTTTACCTATGTGGTTTGGAAGCCCTTTTCTATACGAGGCTTATTTACTCTCAGAACTCCAGATTCACCGTTTCATTTTAACACATTCTTAAGGGCTGACAGAGCTGGGGATACTTTCATAGGTTAATGCAAGTGGCCACACAGAAGTGCCAAAGTGCATTAGGAAAATGGAAATCTCTTCTGCCTCATGGTTGAATTTACCCTTCTCCAGAGACtgaatttatttgcatattttatttcaaatatagaaGAGTTACAATGAAAGAagttggaaattaaataaatgcaatcattaaaTGACCAACGTCACAATGACAAACCTCGTAGACTGTCATGAGATTTTCCTTCCATAGGTATTTAAGTCTTTGCTACTTCTTCATGGAAAAAAATTTCTGTGCTGTAAAAC-TGAGTG----------AAATTGTACAGGAAATGGTCa---atatttagtaattattatTTGTGTTACTTGTACATAGgaacaataaaagtaaatagaat---------aaatacat-------ttataggATTGATTTTcctgcattattttcttttttctaaatattatttgCTGAGTCTGCACATGAGTGTCATCCATTTAG----TAGCTTG-AAATATTGAAGTCATGAAAGTAGTTTACAAGTGCTCAACTGACCTGTTTTATAAGT----GAAATATGGAAATTTAACTtataaacacaaatatgcatattTTGACCATATTTAGATagcaaattaattttatcagtaGTAATGTAAATGCAAGTTTTTAAAGTAATCTTTTATAAATGtc----aaataaagacaaatatagatatatttaattctaaaatggatg------atttttataaaatttttgaactttGATACTA----------TTTAATGATtataatttattaagaaaaagagaacataaaGACAAATTTCCCTTCTAATATTGAGTATGTCATCAATTAGGTTTTGTAATCATGGCGTAGATTTCTATATCTTGGTGACCGATTTCTTGACATTGTTTATCTACTACTTGGGCTTTaatgaattgtttttctctttcttgaaggtATGTAGGACATCCCTCACTCAAGTCTTTGTTATTTTGCCTCCAAAGTTCAATCACTAGTTAGTTCGCAATATATACTAAGAGAAGTAGCGAActccaaaataaatgtaataaacagaGGTTTGATGCCAATTTCAACTCCCAGTCACTGTGCTTGTGTGTTAGT--GCCCTTGACAGGTAAATGTGAGCTTAGGCATCAGCTAAGAAAAATTCAAACTGCTAACCAAGGGCAAGAAGAAGTCAGCTAAACAGTACACAGGGTCACCTAATC----------------ACCCAAGAACTAGCAGAGAGGAGAGTAGG-------GATTCCTAATGTGACCACCATAACAGCCATTTTCAGGAGCT-------CAGTGGGTAAACTGCAAAGTTTCTATCCTtcgttttctttcttccttttcaaatatTGCGTGTTCTCAGGCTAGTGAAACCTGAGTCTCCAGGATATTTAAATGAATTAGGAATGG-----TTTTCTTAACTACCATATCCAAAGTCAAAGCACAAGTTTGGAAATTCTCTAGATATTAAGAACTGAGACAATGAgttgttatatcttttttttttttttgaaattttaccaTACCAAATAGCTTATGTCATTTCCCCATGTGAGTGT---GACCACTACTGTGTA---------AATTGCCATCAACTGTTTCTATTATGGAGACTCAGACTCCTTTTTGTTGTTAtggaaaattttctatttattggtTTTCAGaacatcctctttcttttctctttctttct

a score=35560
s chr3           156804816 3211 + 160039680 ATTTGAACTCTGCCTTTTCCTAATTGCTACTTTGAAACCACCCTATGGATACATAATGAGTGTAACTTCCTCAATA-GTTTTTCTTCATGTGCTTTGCAGATAGCGACCCATTAGCAGCCATTACTGCTAGGAAGTCTAGGGATATACTATGCTGGACATGTGATCCGTCCTTTGCAGTGCTTTGAGGAAACCACAAGAGATCTGTGTTAAACTCTTTGTTGTCATTTGCAAAGAATAATTAATGAGTTGCTGAGTTGAATTTTTAAAAGTTAGCATTGATTTACATTTAAGAGTAGACAATCAATATGGCTTTATTGATTAGTAATAAAACTA-TAAAAATTTTATATTCTTTCTTCATCCTTTATGGCTCCCTTACTCCAGCAGTCTGGCACCCAGTTCTTTAAGAACCTATGGAGGGAGCATTTATTACAGCAAGTGG--------------------TCTTCTGCACTTGC-TTTTCTGCTCTCTAACAACAACAAAAAAATCTCTGTATCCTCCCTGGATCACAAGCTTCTGGAGATAGCAGGT-------------------GAGCAGGCTGTAGCCAGCACCTGC--------TGGCATCAA--TCAGGGTTTTCCCTTGATGACGTAGCATTGC-----CTGTCCATA-GCAAGGTGAACACTACTCAGAGCTCAGT--GAAAATGAAAGGATTGTGTGTACTGGGGAAGGAGAGAGCAGTCACCTTCCCTCTCTACTCTGTAATAGTGGTGGTACATTCTTAGTACTTCATAATAATTCCTTATGCCTTT-------CAAATTGAAATAAGATGATAATATATTAGTAATTGATACAAATT-ATTTATTTTACTATTCCTAGTgtattt--------tatccccacttaaagctgtgtgaagtcaggtcagaaag--agtttaagtacatgctcaaATTAATTTTCTTCAAAAGAAACT---AAAATTTTTACAGAGAATTATAAAAC----ACTATCTCAATTTTTGAAAAGCTGTGAC---AAAAGGAAAAAATATG---------TAGAAGGGAATCGAGGTCTTTCTCTTTTTATTACTTTCCTAATTTTAAAATCAAATATTTGATTTAAGAAAACTATGTATTCTCTGCAAGTA---GGAAGTTTACATTGTGGATT-----------CTGATGTAGATGTTTTGAGTTGAGAATTGTTTTTTGAGGGGGAAGGGCGGACATGTTTGTAT------------------------------TTTGAGGACTGCTTCTTTCTTAAACAGCAATTCCACAGAACCTAGAAAT---------------TGACCCCCCT------------------TCCAACCTTGTGGCACCTC-------------TCCCTTGTTCCCACTGGCAGCTGGCTCGCCATCCCCATCATG--CCCTGGACTGCTGA-CAGCTG-TGGGC----------AGTGCCTGTA-------ATCAATGTTTGTAGTAAAGTTCCTTACTTCCAAAGACCTGACAAGAGCCTGG-TACCTGCTTTCCATTGATTTTTATTTCCATTGGCCTCTTCTGGATGGCATACGATATTTAATATTTAGATTTTCATGACTTTTTTTCAATATACCATGTACTTGGTCTTTGCGAT--------CAGAGTTATGCCTCACA----TGTGAGAATGTGTCTTTTCAATATTGACATGCACACAGGTTTTCAGAGGTCTCATTGCAGGGCAGACTCTGCTCCA--GAATGAAG--------------CCTCAGGTTCTGT-------TGTCTGGCCAGGTCTCAAAGGCAGGCTGAGCTGAACCTAAGAG----AGCCCAGGGATAAAG-TAAACAACAAAGCAAAGAACACATGCTGCAGGGTAAGCTCTCCTTTACAT-GGTCTGGAAAATTGATCGTTGGCTCATTGTTTGGTGCTATTTAAATTGAAA--AGGGCCTTTAAGTCATACTGTACCAAAAAAAGTATATTTTTTCAAATTAAGAAGTGATAAAGTTAAAAGCAGTGCCCCTCAGATGATG-GTAACTAACACTAA------CA--AAAAGTGCTTCTAAATCCATGAACAATGGAATATATTTAGGAGG-----AAGTAAAGTTTCAAATTATATTATTGATCACACACGAGAGATTTATACTTTTTAATTTGATAAAGATTAAACAGGTGTAAATTTTCTGAACAATT--TCCTCCAAATCAA---CTTGACCTGTCA-ATAAAAACATTA-CACAGAATC--AAATACaattattataagtatttaatactttaaaaatacattatatttgtttaattatattCATACTTATCAACTTTACCCGATGTTCAAATTTATATATAAGCTAAAGACAATTTATGAAGGAAATGGTCACGCATAACCACCATTCTAAAATAGTGAACTGTGTGATGCTCATGTCTCTGGAATAAACTAGAAACTTGGAATCATAGACT-CAAGCTTAGATTTGAATGCAGATGTAAGATTGTG-CAATGTTGCACAG-CCTCATGAGTGCCGCCTTGAGCACTGGCCTCATAGT---------AACTGGACACCTTGATAGCTAAGGGCTATGTGGCCTACTCAGCTCACAGCACAGT------CCCAGCATGGGAGGGACCTTAGTCATGGAGTTGGCCTTTGCA-ACAGAAGACTTTGTAAGAAA---GCAGACT-----------GAATGA-GACACAGGACTCATGAAGAAAGCACAT-----------------------------TTAAAGCTGATGCCTGA--AGCTCAGGGAGAATGGTT--TGGACTCTAGACACAGGAAGTGTCTATTGAGCATGTGATCTCAG--AGCAA-----GGCACG-----ACACAGAGATCTGAGGGGA--------ACTGGGCCTCCAGCTGCATGTACACTAG-GCCATGG--------------------AAATGGGAAAATGTTCCTTAGAGATTTTCAGAAGGCAGAA------TCAGTAACCATATATG-----AAAGAGATGCTTTTATACTCGGATTCATGTTGGAGCTGAGACCCACTTGT--CCCAGCC--TGACTATTCTGACCTACTCAAATATTCTACCATTTCTGCTATTATGTCATCCTCCCAGAATAGAAGAAGAAGAAGAAAAAAAAAGATTGTGCTGGAAGAGGGGGAGGTAATGGTTCAATTACCATGAAAAGTAATCTCCAAATTGTCTGCAGGAACTAATAATGGACATTATTAAACTTGAAATGTTGAA--GGATAGGGTAGACTGTGAAACCCTGTTCAAAGTTGAATTCTTA-AGAATAGAAGAGATTTTTCCCAAGTAATGATGGTCTTGTTGAAGCCCGGATTGGGCATTTTTATATTCCTTTCCAGCCCTGTAATTTTGTGATGTCAAAATAATTGGGACTCAGAAAGAGTGTTTTAGAAATTGATATCTACCCATGACGCAAAACTCAAAAGGAGATGAAATTCTGCTGTCTGCATGCTTCCTAGATGGAGAGACAGAAACCACCCCCATTCAATCATGTTTTTCACATTTGAGAAAAAT
s HiC_scaffold_1 143974171 3428 + 233722169 ATTTGAATGCTGCTTAgttttaagtgctacttttgagCCACGTTACAGGTTAATAACAGGTGTAACCTC-TCAACATGTTGTTACTCCTATGCTATTTAAATCCTAACCCATTAGCAGCAGTTACTTTTAGTAtgctgagaaacatgcaatattcTAAATTTGGCATGTCCTTTGCATTGATTCGAGGAAACCATGGGAGTTCTATGATAAACTCTTTGGTGCAATTTGTAAAGAATAATTAATGAATTGCTGAATTGCATTTTGGAAAGCTAGTATTGATTTACATTTAAGAGTGGACAATCAATATGGCATTATTGATTCGTAATAAGAgtactaaaatttttatatcatttcctCATGCTACATGGTGCTGTTATTCCAACACTCTTCCACTGAAATCTTTAGACTCTTTT----TGAGCATTTAGTGCATAGAATAGAGAATAAAATTCTGCCCACACATTATGTGCTTgctttttctgctattttatgATCACA--------TCTATCACTTCACTGGACCATAGGATCCTTGAGGCTGTGATTCTATCACATTGAAATCACAGACCAGGTGTTGAACAGTCTCTGCTAATTAGTTGATATTAAAGTCATCATTTTACTTCCCCAA-GTAATACTGCTGAATTTGTACTTGTGCTCTGTAGA-ACTGTTTGAAATTCaacaagaaaatggaaggaaCGTTTACAGTTGGAAAAACAGCACTAATTACCAT--ATTGATAccctttaaaatttattgtgtATTTCTATGATTTTATAACAAAT-TTTATGCATCTGTATATGCAGTTTTCATTAAGATA-----GTATCACTAATCAATAAAACTGAATCCATTGCTAGACtcacaaattattttctctggctattCCATCTTACAACCTCATGACGGCAGGAAAAGAAGGAGATTTAAGTCAATGTTCAAGCAAATTTCcttccaaaaaaattttaatgatataCACACCTAAACAAATGGCcccaattatattaaaattt-aaggaCTGTGTCATGAAAAGATCAGGAGATGGTTAcacattacaagaaaaaaaaaatgcccgtattgcaaaaac------------aaaaacaaaaatttgatgtAAGATAATTGTAAATT-TATGAAGATACCTGGAA----ATACTGTAGAATGAAATATCAAGTTGATATTAAGGTGTTTCTGTGGGAGGTTCCTAATGAGgcgaatgaatatatatatatatatatgcattaaaatataaaatatatatgtatgtatatatatattttattttttaatca-----tctttATGACTCAAATGTCTAATGTCTTTGGCATGAGTCTCTTAAGTGTGAATCAAGAGTACTTATTTTAGAAGAGTCTCTTAGAAGATGAATTCCTATTTGTTTACTGGCAATCacttttccattctctttaaaGTCCTTGATATCCTGAGCAACCACTGGGCTGGTTGTTCTAATCTCTATAAATTTGCATCAGTATTTAT--TTGCtcttcttaatttaaaataatgattagaATTCTAGTTACCTATGTACCATTAA-TTTTGTGTCCTTCTGTCTTTCTTGGAT-------AATACTTGATGTTGA----Tgcataa--gtttttaaatttagtatgtttt---tctttatgaCATAACCAGAAGACTCATATCCGATGCTATTGTGAAATAGTG-CATCTTGGTATGAGTACACATACAGA---CCAGGGGAGCCAGTA-AATGCAGATTTCGATGCAACGAATTGAGAGTAAGTCTAAGCATCCCAGGTGCTGGTGAAGAATGTCTGG----------------AGTTATATCGACCCTCAGAGTAGAAAATCAATGATAAAGATGAGAGAGGAAAATAAACACAGGTGATGCAAAATACCCTCATCTTGGGAGAAATGTGATAAATTTCTCCTTAGTTCATTGTTAGAGACTATTTGAATAGCAAATAAAGACTTTATGACATTAGACTACAGAAAAACTTTAACCAACTGCATTCACAAACATGACACGAAAAATGCGTTTCTTTCCTGTGATACGTTA--AACATTaagtaaagcaataaaaatatttttaaat--gtaattaactAAATACATTTAAAGGAAACATAAATGAGCTTTCAAGTTATATTTTTGGTAAAGTGCATAGCCTTTATATTTTT--GGTTATTAAAGCTTCTACAGTGCTGAATTTTTTTGACCTTTCCTCCTCAAACTCCATTTCTTAATCTGCAGTATATAAATGGTATTATAGCATTCAGAATAAGATTG-CATGAATGTGTTCAACATAAAGAATACTTC---TTAGTGTAGTTTTACCCATAGTTATTACCTTTGCCCAAACTGCAAACagaactggaaattaatggaaactTGAAAAGTAAGCAGCCAGATAGGGTGATTTTTCAAGAATAATGGTCACtatgatatttacattttaagaaattgctGGAAGCTTGAAATTATAACCTATGAAATTAGTTTTGGTCATCCATTTCAGATATTGATTATGTTATTTAGTTCTCCTGAAACTTAGTTTTAGGGTCAACCTTAATGTCAGCAGGAGAACTGAACA---GGATAGCATA-------------CACTTAACTCTCAATATGGTAACAAACCCAAAACAGG------CTCTTTTACGGATGCTACTTTTATATACCAAGCACTTTCACAGAAACAGGCCAActctgggaaaagaaaatgataacaaATAACTAGTGAC-AAAGTAAACAAGGTATTAACCAGAAGCAAGGTTAGGCGTTAAGGTTGATGTCTCAACAATTAAGACAGAGTCACTAATAGTTTGTAAACAAAGTGAAAGT--------TATGTCATTTTAGTAACCAAAAGTGGTCATGTGGAAACCCAGAGATGAGAGGGCAAAAATTACACTGA---TCAAAATTCAAGTATGTTAGAATtataggaaataagaaaaacgaaaacaaatgaaaaacagt--cTTAAAAAGTTTCAGAAGACAAAAGACACTCCAGTGAATATAGATGTTTGTCAATGGAGGACCTTCAATTCAAAT----------GCCTATACCCAGCTGTTACATAGCCCATGCTTATTCTGACACATTTaacttttgtaaaattttttgcaTTATGTCATATGGCCAGACAGGAAAATGA-----------------TGCCCTGCA-----GGGAGGTAATGGTTCTATTACCTTGAAAAAT-ATCTCAGGGCTGTCTTCAGGAACTAAAAATGAACATTACTACATATGAAAAGACCAACTGAATGGAACAGGGTATGAAATCATCTTCATAACTGAACTCTTATAAAGCAGAAGATATTTTG-CTAAGTAATG--TACCTCATGGAAGCCTGGAGTGGT--GTCCTGCATTTCTTT-CAGCCCTCTAATTTTGTAGTGTCAAAATAATTGGTAGTTAAAAAGTGCATTGTAGAAATGGGTATCTGTCACTGaatccaaagagaaaaaacagaaacatt----------tgtgtTTTCAATATGATGCAATAGAAATCA--TTCATTCAATCAT-TTTCTTACATTTAAGAAAAGT

a score=12883
s chr3           156810608 637 + 160039680 ttcgattttagccatattgact--atggctaatggaaagtt-------attggagatgtAAGACAGAAGCTAGGAACGGAAGTGAACCTTCA------TGTTCTGTTTTGAGAGATGTTGGGTAGAGACAGCATTGCTGCCATGCAAGTTTCATCCAGGAATAATTGGACTGAGAAGAAACAAA----------------CTGCAATCATCTTGAA------------------AGAAGCAAGCAG-----TAATAATTTAGAAAAAAAATGCAGTTTTACAGGAATAAAAGGAGaatttttttttttattttttaaGGATCAAGGAAAACAAAAACTGGAGAGAGGTCGGCTGAGAGTTCAGCCTCAGCTCTGGAAAGCACTT-ACCCGTAATGCGCAGG-TCAAAGCTCATGAGTGAAGAATGTATGTGGCACAGCAGGGGCCCCTCTGGAAGCAAAGATGCTCTTATTTATTGTTCTGTCTCTTGAAACTTTTATAGTGCCTGGAACTTTGAGGGAATAAAAGATTAAAGATTCGCCCAGGTAAAGACTGATGAGAAGGAAAATGATAACAAAGG----CAAGATCCCCTTTGCCTTGGAAGAGGATGCCTGCTACTT-----AAGCTAGGCTTGTGGGAAAATGTGAGGTGGCTTCTGAGTTAATTAGAAA----GGGGTAGTGTCCAGCATAATGACtgtg
s HiC_scaffold_1 143980519 685 + 233722169 ttcaatttcaGTCATACTTAATTGATGACAACAGTAAATCTTTTCAGAGTTTGAGATATAATGCTCAagctaaaaacagaaatgaaagttgAATACAGTATTTAATTCTGAGAAACACCAGAGAAAG-TGACATTAGTATTAAGCAGTTATTAACAAAATACCAGTAGGCTGAGAAATATCAAGAGAAGTGGATCTTACCCTCCACTCCTTTGGGAGTTAAAGTAAGAGGGTGGAGAAGCAAGCAGGCAAGTGATTATTTGTAAAACA----CAGTGTCACAGAAACAAAAGGGGGTGCTTGTTTCAAA------AAGGATCAAGAGAAGCATAGACTGGAAAAAGGTCAATTGAGAAT-CATCCGTCACTTTGGAAAATACTTTACTCAGAATGTAAAGGGTCAAAGTTCAAAAGAGAG--ATGTGTATAACAAGGAATGGAGCTGTTTTATATTGGAGataatcttatttacttttctgtctACTGATCCTTTCATAGAGCCTGGCACTTTGGGTGAATAAGAGACTCAAGGTTTTGTCAGGTGAGGAGAGATGAGA--GAAAGCCAGAAGAAATGGGATCAAGATTATTTTAGCTTTAAAAGTGAG-----ACTAGTTCCCAGAAGGGGAAATTGGATGGAAATACAGAGATATTTTTGAGATAGCTAGAACAATTGTGAGAGTATCCAACTTaataactttg

a score=25765
s chr3           156816012 499 + 160039680 GCCATTTTCCACTAACTCGCCAAAATGACCAACACAAAGGGAAAGAGCAGAGGCACCCGGTATATATTCACTAGGCCTTTTAGG-AAACATGGAGTTGTTCCTTTGACCACATACATGAGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCACTGTCCAAAAAGGAAAGCCCTATAGGTGTTACCACGGCAAAACCGGAAGAGTCTACAATGTTACCCAGCATGCCGTGGGCATCGTTACAAACAAGCAAGTAAAGGGCAAGATTCTGGGCAAGAGGATCAATGTGCAGATTGAGCACATCAAGCACTTGAAGAGCAGAGCTAGATTTCTGAAACGGGTGACGGAGGACAATCAGAAGAAAAGGGAAGCTAAAGAAAA--------GGGTGCAGCGGAAGCGCCAGCCTGCGTCACC----CAGAGAAGCACACTGTGTGAGGACCAACAGGACAGAGCCTGAGCTGGTGGAGCCCATTCCATACGCATTCATGGCCTAA
s HiC_scaffold_1  18289656 508 + 233722169 GTCATCTTCCAGTAATTTTCCAAAATGACAAACACAAAGAGAAAGGGGACAGAAACCCAATACATTTTGTTTAGGCCTTTTAGACAAAAATGGGGCTGTTCCTTTGGCCACATACATGCGAATCTACAA--AGAGTGATATCGTAGACATCAAGGGATTGGTT-CTGTGCAAAAAGGAGTGCCACACAAATGGTACCACGGCAAAACTGGAAGCGTCTACAGTGTTATCTAGCATGCTGCTGGCATTGTTGTAAACAAGCAAGTTAGGGGCAAGATGCTTGCCAAGAAAATTAATATGCATATTGAGCATATTAAACACTCAAAGAGTTGAGATAACTTCCCGAGACACGTTaaggaaaatgatcagaaaaagaagaaagccaaAGAGAAAGATACCTGGGTTCAACGGAAGCACCAGCTGGCCCCACCCACACAGAGAAGCACACT-TTTGAGAACCAATGGGAAGGAAATTGAGTTGTTGAAATCCATTCACTATAAATTCACAGCAtaa

a score=10987
s chr3           156816013 162 + 160039680 CCATTTTCCACTAACTCGCCAAAATGACCAACACAAAGGG-AAAGAGCAGAGGCACCCGGTATATATTCACTAGGCC-TTTTAGGAAACATGGAGTTGTTCCTTTGA-CCACATACATGAGAATCTACAAGAAGGGTGA-TATTGTAGACATCAAGGGAATGGGCA
s HiC_scaffold_1 181029411 166 + 233722169 CCATTTTCCAGTAATTCGCCAAAATGACGAACACAAAGGGAAAAGAGGAGGGGAACCCAGTATACGTTCTCTAGGCCTTTTTAGAAAACATGGAGTTGTTCCTTTGGCCCACATACATGCGAATCTACAAAAAGGGTGATTTTTGTAGACATCAAGGGAATGGGTA

a score=25080
s chr3           156816013 495 + 160039680 CCATTTTCCACTAACTCGCCAAAATGACCAACACAAAGGGAAAGAGCAGAGGCACCCGGT-ATATATTCACTAGGCCTTTTAGGAAACATGGAGTTGTTCCTTTGACCAC--ATACATGAGAATCTACA-AGAAGGGTGATATTGTAGACATCAAGGGAATGGGCACTGTCCAAAAAGGAAAGCCCTATAGGTGTTACCACGGCAAAACCGGAAGAGTCTACAATGTTACCCAGCATGCCGTGGGCATCGTTACAAACAAGCAAGTAAAGGGCAAGATTCTGGGCAAGAGGATCAATGTGCAGATTGAGCACATCAAGCACTTGAAGAGCAGAGCTAGATTTCTGAAACGGGTGACGGAGGACAATCAGAAGAAAAGGGAAGCTAAAGAAAAGGGTG--------CAGCGGAAGCGCCAGCCTGCGTCACCCAGAGAAGCACACTGTGTGAGGACCAACAGGACAGAGCCTGAGCTGGTGGAGCCCATTCCATACGCATTCATGGCC
s HiC_scaffold_1 174026041 501 + 233722169 CTGTCTTCCAGTAATTTGCCAAAATGACAAacacaaagggaaagaggagaggaatcCAGTTATATGTTCCCTAGGCTTTTTAGAAAGCATGAAGCTGTACCTTTGGCCATGTATATATGTTAATCTACACAAAAAGGTGATATTGTGGACATCAAGGGTAAGGATACTGTGCAAAAAGGAATGCCACACAAATGTTACCATGGCAAAACAGGAAGAGCCTACAGTGTCACCTAGCATGGTGTTGGCACTAC----AGTAAACAAGTTAAAGGCAAGACACTTGCCCAGAGGATTAATGTGCATGTGGAGCATATTAAACACTC--AGCGTTGGGATAACATCCTGAAATGTGTCAAGGAAAATGatcaggaaaaaaaggaagccaaagagaaaggTACCTGGATTCAACTGAAGCGCTAGCCTGCTTCACCCAGAGAAGCACACTTTGTGAGGACCAATGGGAAGGAGCCTGAGTTGTCAGAACCTTTTCCCTTTATATTTCTTGTC

a score=24977
s chr3           156816013 494 + 160039680 CCATTTTCCACTAACTCGCCAAAATGACCAACACAAAGGGAAAGAGCAGAGGCACCCGGTATATATTCACTAGGCCTTTTAGGAAACATGGAGTTGTTCCTTTGACCACATACATGAGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCACTGTCCAAAAAGGAAAGCCCTATAGGTGTTACCACGGCAAAACCGGAAGAGTCTACAATGTTACCCAGCATGCCGTGGGCATCGTTACAAACAAGCAAGTAAAGGGCAAGATTCTGGGCAAGAGGATCAATGTGCAGATTGAGCACATCAAGCACTTGAAGAGCAGAGCTAGATTTCTGAAACGGGTGACGGAGGACAATCAGAAGAAAAGGGAAGCTAAAGAAAA--------GGGTGCAGCGGAAGCGCCAGCCTGCGTCACCCAGAGAAGCACACTGTGTGAGGACCAACAGGACAGAGCCTGAGCTGGTGGAGCCCATTCCATACGCATTCATGGC
s HiC_scaffold_1  60922508 501 + 233722169 CCATCTTCCAGTAATTTGCCAAAATGATGAAgacaaagggaaagaggaggggacCCTGGTGTATGTTGTTTAGGCCTTTTAGAAAACACAGGGCTGTTCCTTTGACCACAGACATGCGAATCTACAAAAAGGGTGATGTTGTAGATGTCAAGGGGATGGGTAGTGTGCAAAGAGAAATGTACCACAAATGTCACCGTGGCCAAACAGGAAGAGTCTCCAGGGTTACCCAGCCTCCTGTTGGCACTGCTGTAAACAAGCAGGTTAAGAGCAAGGTACTCGCCACAAGGATTAATGTGTGTATTGGACACATTAAACATTTAAGGAGTCGTGACAGCTTCCTGGAACATGTGAAGGAAAAGGATCCGAAAAAGAAGAAAGCCAAAGAGAAAGGTACCTGGGTTCAACGGAAGCACCAGCAGGCCCCTCCCAGAGAAGCAAGCTTTGTGA-ACCCAGTGGGAAGGAGCCAGGGCTCTTGGAATGCATTCCCTTTGAATTTATGGC

a score=16022
s chr3           156816017 514 + 160039680 TTTCCACTAACTCGCCAAAATGACCAACACAAAGGGAAAGAGCAGAGGCACCCGGTATATATTCACTAGGCCTTTTAGGAAACATGGAGTTGTTCCTTTGACCACATACATGAGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCACTGTCCAAAAAGGAAAGCCCTATAGGTGTTACCACGGCAAAACCGGAAGAGTCTACAATGTTACCCAGCATGCCGTGGGCATCGTTACAAACAAGCAAGTAAAGGGCAAGATTCTGGGCAAGAGGATCAATGTGCAGATTGAGCACATCAAGCACTTGAAGAGCAGAGCTAGATTTCTGAAACGGGTGACGGAGGACAATCAGAAGAAAAG---GGAAGCTAAAGAAAA--------GGGTGCAGCGGAAGCGCCAGCCTGCGTCACCCAGAGAAGCACACTGTGTGAGGACCAACAGGACAGAGCCTGAGCTGGTGGAGCCCATTCCATACGCATTCATGGCCTAATGTACAAAACAGAAATAAAG
s HiC_scaffold_1  18806919 501 + 233722169 TCTCTGGTAACCTGCCAAAATGACACACATGAAGAGGGTAAAGAGAGCTATTGATTGTGTCTTC--TAAGCCTTTTAGGAAATATGAGGTTTTTCCTCTGTTCACATATATGTGAATCTACAAGAAAGGCGATAATTTAGAGATTAAGGGAATAGatactgttcaaaaagaaagtcCCTATAAATATTAATGT-GCAAAACTGGAAGCCTCTATAG-------CAGCA---------CATTGTTGTAAACCATCAGATTAAGGGCAAGATATTTGCCAGGTGACTAAATGTGTATATTTATCATGTGAAGCACT--AGGAGTCAAAATAGTTACTTGAAACacataa---agcaaaattaaaataaaaggtagaaaatCCAAGAGGAACTTACCTGGGTTCAACAGATGCACCAGTCTGATCTGCTCAGTGAAGCACATGTTGTCAGAATTGATGGAAAGAAGCCTGAAATACCTAAATCTATTCCCTATGAACCCACAGCATagtagatgaaaaaaaaagagag

a score=17649
s chr3           156816027 465 + 160039680 CTCGCCAAAATGACCAACACAAAGGGAAAGAGCAGAGGCACCCGGTATATATTCACTAGGCCTTTTAGGAAACATGGAGTTGTTCCTTTGACCACATACATGAGAATCTACAAGAAGGGTGATA---------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAGACATCAAGGGAATGGGCACTGTCCAAAAAGGAAAGCCCTATAGGTGTTACCACGGCAAAACCGGAAGAGTCTACAATGTTACCCAGCATGCCGTGGGCATCGTTACAAACAAGCAAGTAAAGGGCAAGATTCTGGGCAAGAGGATCAATGTGCAGATTGAGCACATCAAGCACTTGAAGAGCAGAGCTAGATTTCTGAAACGGGTGACGGAGGACAATCAGAAGAAAAGGGAAGCTAAAGAAAAGGGTGCAGCGGAAGCGCCAGCCTGCGTCACCCAGAGAAGCACACTGTGTGAGGACCAACAGGACAGAGCCTGAGCTGGTGGAGCCCATTCC
s HiC_scaffold_1  52267556 601 + 233722169 CTTGCCAAAATGATGAACACAAAGGCAAAGAGGAGGGGAACCTGGCGTGTGTTCTCTAGGCCTTTTA--AATCATGG-GTTGTCCCCTTGGCCACAGACATGCAATTCTACAAACAGGGTGACAgcagtttagctcagcagcacaagcgcctgcctggcaagcttgaggtcgtgagttcgattcctggtaccacaacacacacacacacacacacacacacacacgcacacacgcacacacgcacacacgcacacacgcacaccaaAAAGAGTGATTTTGTAGACATCAAGGGA-------CTGTGCAAAAAAGAATGTCACACAAATGTCACCATGGCAAAACAGGAAGAGTGTCCAGTGTTACCCAGCATGCCGCTGGCACAGCTGGAAACAAGCAAGTAAAGGGTAAGACACTTGCCAAGAGGACTGATGTGTGTATTCGGCATATTAAACACTGGACAAGTCGCGACAGCTGCCTGAAACGTGCCAAGGAAAAGGATCTGAAAAAGAAGGAAGCC-------TGGGTTCAACTAAAGCACCAGCCCGCCCTGCCCAGAGAAGCACACTTCGTGAGAGCCAAGAGGAGGGAGCCTGAGTTGCTGGACTGCACTCC

a score=29736
s chr3           156816890 1548 + 160039680 atagtttctggcTTTTCTGTGTAAGACCAACAACTTCACTATAGCCAACTTGCTATTTGTTAGCAAAACT---------ATTAAAACACAGCCATT-TGGCCCTGACAGAAAATGAATGTTGTAGACACACTAGAGGCAAATGTTGATAGCACTCCAGT----TGTTAACACCAACATTGTGTTGTGGAGACAGAAGAGCCTTTAAGAGTAATTAACACAACA---------------TGCATACATCAAGTGATGGACCTTGTACATTGGCCAAGTTAGGGTAATTGGCCTTAGGGTATACATCAGAGATCAGAAAGGG--TCAGGAAAAACAGCCAGGATACTTAGACATACATGAGGATTTACAT--GATAGCCAGAGCCTGGAAAAACAG----TCTCTGATATAAAAAT-ATAAACATGAGAAAACTGACCTTTTTTGAGAAACC--------CCAAATGTGTCATCAGAAAATACTTCCAAAGTCTTTGTTTTGATGTTTTACAAAAGAGAAGTAAGGCCTTCTCGTAAGGATTGTGGGGGATATACTGACCAAT-CAACTAA--ACATATAATTA--AATGTTCTCGGTAATATATTTACTGGTGCAATTTATGTTCAGCTGTAAACTTTATT-TCCAGAAGTTTAAAGAACAAGC----TGGAAGGATT------------TTTAATGGACTTGGGTCATTTTTAAAGATGTATTAAAATCATTAATAACATTCTCAGCCA--------CGAACGTGCCAGCCATGGAATGTCATTACTCATTTGTCCTACTCAGG--AAACAAAATGCCGCTGTTGCATTGATCGAACCTGCAGCTGGATC--TTAGCGGCTCATTAATTTTTATCATATGTTGAGTATTCTGACCCTGTACATCAGCTTTTGAAATAGCCACTTGTCTTCCTTCCTTCTGCAAACAGCTACTGAAGCATTTTTAAAACGC--AGTCTAATTTATGTTGTTTTCACTGAACATCTGTGAGTG-GAAAGCTGGCAAACAAGGGTTGCAGCTTATGTGCACTTGGGGACTCGT-CCACCTCTGTAAACTTCTTCCAGGA--TCAGCTCAGGCAAACATGACTACAAATTGAAGCAGGGCTTTGATGCCGTGGCTCTTCATTTCTACTGCTTC--CTCTTACAGAGCCGACTCCACATAAATGTACTATTTTTCTCTTTCTGCCACTTGGGTGTCACA-GGGAAAAGCCCAT------------GGTCATGGAATGAGA-------------------GGTCCAT-----------AACCTGC---------AGTAAGAGCTGCCTTC-------ATAGAGAAGCAGGTTGG--------------------AGTGCCACG-GCTCAGTGTC---------------------------------ACAGGGAGCTGTGGTA---------------TTGCTCTAGGGACTTAAAGCATTCTTATTACACA---------TGTTCTGTTATTCCAGCTAATTTTGTCTCCTTTCTCATCTGAATTGAGTAACTCAGTTTTCTGCTCCAATTCAATTCATGCTAGACTGCC----AGGTTCTTCATGTATGCTGTAATAGTTTACAACTTCAAAAAACAGAAGAACT----------CATTG--------GAGGAATGACTGGTGTGAGTGCACATCTTGGGCACAATCTGATAAGAAGATATGTAGCCTTTGCCTACTCTCTAATCCATATGT-CTCCATTATGTTTAGAGCCATATTC-TTACATTTTTAT
s HiC_scaffold_1 143985985 1723 + 233722169 ACAGAATTTACCTTCTCTTTATAAGATCAACAACT-----ATTGTAAATACAGTCTTTGTTGGTAGAACTTGTGTCACCATTACACTGAAACTATTAGGGTTCCATAAGAAAAATAAGGTTTCAGATAT-------GGAAATTCTGACTTCACTTGAATAATTTAGTAATAAAAGTGTTATat-gtggaaa-agaagag-----aaaaatatttaatattacagTAACGTAATGACTTCATATGAAACAAGCCATCATTGTTATAAAGAGTCCAAGTTAAT-TATTTCACTTTAACTTGTACATTGGATATCAAAAACAGCTTGAGAGGAAATAGCAAGGATAGTTAAAATTGCATTAGGACTTATATCTGATA---AggcactggaaaaaaataatttcattgttaCTTAAATGAGAAATTTGAGACAAGGAGTTTTGGTTGAGAGACTTACAATTACAAAAGCTGTGATAAACAGATTCTT---ATGTCTTCGGTTTcctattttattaaagaaaaagagagtgtACT-GTTAAATTTCCTAGAAATATACTGACCAATACAATTTAGTAGAAATAATTAGTAGTATATTTAGCAACATACTTACCAGTATAATTTATG-------GTAAGCTTTATTGTCCAAGAGTCGAGAGAATAAGCCTGCTGGtaggattatttttttaatttttaatggacTTGGGTCATTTTTAAAGATGGATTAAAATCATTAATAACATTTACAGTCATATAAGCCCTAGCCACCTAGCCATAAAATGCCATTACTCATTTGTTCTACTTAGGCTACACAAAATGCAATTGCTGGATTGATCAGATCTGCAGCTGGATCACTTACTGCCTCattaatttttatcatatattGAGTATTCTGACCTGGTACATCAGCTTTGGAAATAGCCACTTGTCTTCTCTCCCTGGCCAAATAGCTACTGGATGCATTTTAAAACTCTTGatctaatttattttgttctcGTTGAACATCTGTGGGAGTGGAAGCTGGTAAACAACCGCT-TAGGTTACATGCGCTCCAGGAGTCGTGTCACCTCTGTGGACGT-GGCGAGGACCTCAGCTCCTGCAA----GGCTGCAGA--GATGAATGCATCTCAC-------CTCTTTCCTTCcgctcctccttctctttctgcccCATCACCACGT--ATTTAGT-TACTGCTCATCTTGCTA-TTGGTCATCTCAGGGGAAAAGATCATTTGGATGTTTGAGattaacaaaaaacaatagtgaTAGCTTTCTTCTGATTCATTCTTCTTCATGAATCTTCCTCAGTACAAATAAAACCTTCTTTCCACACCTATCGTGGTAGAAGTTGTTGACTGACATCGTGAATCACAGTCTCACATGCTCAGTGCCTCTCCCCTGAAGGCCACAAGATGAAAAATGGCAATGGTGAATCATGGAAAGACAACAGTTGTGTTTACCTTATGGACTTGAACC--TCTTCCTATGTGGTGgtgttttcttcccttctcccagCCACTTtgatcttgtttctcttcctaA-----TATCACTGTTCTATCTTCCAAATTAATTCAT------CTCCCGTTTAGTTCTTTCATAGATGTTATAAGTCTCttcaa---taagaaaaagaagacctTCAAAGATGACAGTGCTTAGCCTAAGAAATGTCTGGTGTGACTTCAAATATCAGAGATAATC-GAGCATAAGACATGCAGCTTCCCTTTGCATTCCAACCCATGTGTGCTCAACTGTGC----AGTCataaccattttatttttat

a score=57595
s chr3           156819082 3579 + 160039680 GTTCCTTTGGCTTTCTCTAGACACTTGAAGATT--TATGATGGTTACTTTTTCTGTGTGTTGCATGTC--ACACTCTGTATCTATATTAA------CAGTATCTACCAGCCCTTGCAATTTATTCTCTTTAATCTT-GTACTCCCTTCCATGTTATGTTATCCTTACCTGAA---------CCCCAGTCTTTCT---TCTCTCCTGTT----TTCCTTTCACATCATACATGCCCACTTTTAATTTCT---CTTTTACAGAGAAGGATGTGGCTTTTGACTTATGTATGT-TATGTGTTTTGGGATGAGCACTGGGGTTTTCCTAAGGGCAAATCAGAGACCAGTAGGCATCTGATGCCAGGT-ACCAGGCATAATGTATGGGGTTGATCACAAAC------TCCCTCTGCTGT--------------TACAGGAGTCAGATTGTTCTTTTTTTGTGCTCATCTGTGGCCTGGAAGTGAGTGCCCTTAGTGAACAAGAAATGAGTCTTTTCTCATTAGCAGCTTAGGGCTGGAGAAAAAAAATATCCAAATGAT-TTTAAAATA--CCCAAAGTGCATCCTTTCAAATGAGTAACTATGCTTTCAACTTCCATGTGGCAATGCTGATTATGTTATAAACAAACTGGCAGAGAGTTAATTACACAGAAAAGTAGCT-----AAGAGACTCAGAAAGTAAATGGCTTTGATAAAACAGATTTT---------ATAAAAATCTCCTAATTTCT-CAATTCATTCCAACATTT--GAGATTTTCCCTTGGCCAGGAATGGATACAATTTTCTTCCCTTTTGTGCCACAAAG---------TATTTTCCTGATACTCAGGAGTTG---AAGTGTTGTGGGGAACTTACTTCAGCTGGTGTT--TCTCCAATGGATCTTGTCC---------CTAAAAAATCCGAAGACATCACAGAAA-GTTCTTGGCACATCT---CTCCTGGAATAGTGGAGTGTGGAGGTCATTGACCCATTCCCCTTCTGTACCTTCCCCAGCACCAGACATCTTTACATCTTTGGTCAGTAGG-----TGTACTCACTGATTAGCATTATCctctctctctctctctctctctctctct-------ctctctc----------------------------tctctctct---------------ctctctctctc-tctctctctctctccctctctcA------------------------------------AGACTCTCTAGCAGCTCCTTCAGTACCT-----CCCTACATCTTGTCTCTTTTTTTCTGAGTCTAGTTAGCTAAGGGTAAAGAACATATTGGATTA-GCAGGTCTGGGGAAGAACTGGACCTTAACTCTTTGAGGCTTC----AAGGCTATGAAAGCAACTTTACTAAAATG--------------------------------------------GCAGTGCCTCTTTCTGGAAACTTCTTGACTTCCTAAGCACTCACATTTCTGTTTT-ATTACACTGA------AGGTTCATAAAATATTTCTGTTTTGTAAATAACAAAAAGGATATTGTGGATT-TTACTCTTACAAACTATTGTACTGCCCCCTTGTTCCTTCTCTGAGGGTCCTACATTCTCTTTCTGATCCTCAGAACTTTGTACCTGCTGAAGGGTTCTGAGTTATCTGCAGCATAATCGTAACACgagaaaggaggcccttggtcttgggaagaacatatgcccaatacaggggaatgccagggccaggaattaggagtaggtgggttggggagcagggcggggagagggtataagggacttctgggatagcatttgaaatgtatatgaagaaaatatataatTTTAAAAAGCCAATAAAAAATTAAAATACTCCTTTCTACTCTAAAGGTGAGAGTGGATCATTAGAATCTAGAGAC---------TCCAGGGGGGGCACCTATGGAACAACAGAGCATTGTGGGGAGGGGTCTCTTTCATGCTATAGGTAACTTGGGAAAATGGGAGGATGGGACATTTT---GAAGCACCCTTCCTTGCAGACCATCTTCACTGCACTCCTCACTATCTGGAAGCTCTCTTCATGTGTCTGGAATTTGAAAACCCTTCATGTCATATGTTCCTGGAAGGGAACATAAAAATGAAAGCAAAAAATAAAAGTAGGAACTGGGCAACATGGGAAGGGAAGCAGCAAAAACAGGACTGGAAGGAACTACAGAGAAAAGACTCATCTGCAGAGCCAACCAGACATGATTAAGGACACGTCTTGATAGTGAGGTGTAACGTCTGAAGAAGTAGAAGCCGAAGCTTAGGCATTCACTCAGCCAAGACAAATGCTTCTTT-AGAATCCCATAATGCACTATTGTGTGGGGCATATCTGTGAGATTAATGGCCAGCTGTGGGGAAGGCCTGGAGCCCAACTTTAAGCCAGTGATAAATATCCTGGATTTAGAGGATTAAATGTTTTTGTAGCTGAGCTATATTTTATGAAATGATAAAAAACAATTACCTTTCCACATACAGAACTCTCACACACTGAAACCAAATTTAATTAGCTTTGCTTTTCCAGATAAGATT-GAGGTAAAAGAATAAAAATATATGAGTGTTTCCAGATTTCCAAGTCCTGCAGATTTCCCCACCTTTCCTTTCACAGAGTTTCCTATTCTATTTT---AGCTAATGTGTTTCAACTGTTTCCCAT--TCTAACTTCCTTCCTGTGCAGAAAATTACCCCTGTTT-AAACATGCGAAGCTCTGATGGTTGAAGAAATGTATTTTATTGAGTTTATCATACTGACAAGTATGTTAAAACAATACCAGTTGTCTACCAATTAGAGAGTGTTTAGG-CAATCTAT-AAATGCCATCATTCCTAGGGC--TCTGGGGAGCCACAGGTGTAAAATAAA-GGAATTCTTAACAGATTCAAGATGGTTCTTCTTGCATTTAACTGTGTATATCGCACCATGATCTCTATATTTAAATTATTTGATGAAACAGTGTATAAgactcagcgacgaaaagtactggataattttgcatagtacccatgatcaattcctaactccagttctgggatcaaactttgctttccatcctccacatatactaagcacatatgtgacatacaaacatacacaaaagcagggcattaatacatagaaaataagaatCTTTTATAAAATGAATATATAGGTGATTTACTATATACATCCGTACCTTTTCCAAGCTATTCCTTTAACAATCTCACAAATGAACA-GTC-TTCTTCATCCTTGTGAAAACTCTGGGAAATACAACAGTCAcatggagtt----cagggttagcctgcccacatttgaattctaattaagggaatgtctgtttgagttaacttga-gcaagtcacttaaccgccatagccctccagttttcttacataataaccctgtgaagatttaaagagctttctcacataaaatgcttaccacagtTATTTGAGAATTTTTTTTTAAATTCATAGACACACGAGGAAATGTTTTCA-------AGAAATAAAATGAATGGAGACAGTTCAAGGAAAACTCATCGCG-CTTTGTGTTTTGTAGTGTTCTGAGCA-TTTCACAAAGCCAGTTCTTCCCAGACAATTAGGACTCATGCTGATGTGTAGGTAGGGTTATGCTTTCTCTTGTG---AAGAGAATATTATCCTTATAATTT----GAAGAAGTCCAAGATCCCCTTacagt-attagcacagtactgag---------agtctacattcagtagacagagtgcctgggtccgtgttctgcccatgccactaacCTAATAGG------AGTTCAGGGCAACAGAACCATTCTATG
s HiC_scaffold_1 143987729 3351 + 233722169 GTCTCTTTGATTTTCCC---AGCCTTGTAACTTGCTATAATAG--ATCTATTCTGTGTGAGGACTGTTGTAAAATCTATACATATATTCAACTCGGCACTGTCCTCTCCCACTTTCCTTTTATCCTCTTCCATTTTTATACctcctttcattttatattatccTCACCTAAAAATGTATGTTcctgttttatctgtttctgtccTCTTACTCTTCCTATTATCCccttgactcctgctttttttctcctcccttttttacagatgtctctgtctcctttcctttctatGTGTGTGAGATTGGAGGGGAGAGTTCAG--TCCCTTTAAGATAGGTTAGTGACCATAAAACATCAATTGATGTGTGACCAGAC-TCATGTG-GCAGTTCATCGCTACCATAGGATCCCCGAGCTGTGAACAGGACAGGGTCAGAAGAGTCAGGGTAGCTTTTGTGTATGCTCATTTGCAGCCTCGGAGTCAGTGGTCTTAGGAAAAGCCAACAGAATGTTCCCTCATTAGTAGCACAGGGCTGTCGTGCAA---TTcccaaataacatttaaaatagcCTCCAACCCCTGCTTTTTAAATGAAGGACCACACTTTCCAATTCCATGTggcaaggctgattattttataCACATCCATCCAGCCGGTTAATGGTATAGGAAAGGAACTTTaagaagagactgagaaaacaaatGCCTTTGATAAAGTAGATcttgcagaaaaaataaatatcccCTGATTTCTTCAATTCATCATAATATTCCAGAGAATTTCCCCTGGCCATGAATGGATGTAATTT----CCCTTTTGTGTCACAAATGGGGGTGTTTACTTTCTCACCGCTCAGTAGCAGTCTAGATGCTGGGGGGAATGTGCTTC--CTTGTTATGGCCTCCGAAACGCTCTATCCACATGCAGTCTAATAAATTGGA-----TCCTTGAAGTGCGCCGGGTGCATTCATGTTTCCGCAGTAGTCAGTGGTGGGGGTCAGTGTCCTG----CTTTCTGTTCCTgcccc-------------tttctttctctgctcAGCAGTGGCCCTGTACTATTTGGTTAGTATTATTTAGTCCTGCTTCTGCACTGTCTCCCTCCTCAGCTACCCTTTCACAGATCGCTACCATGTAACGGTTTGTATTTCTGCCTGGTAGTTGCTGTGGACTCTCTCTCCCGCCTGTCTCTTTATCCCTTTTTTGTGTGCCAGACGGGAAGCCGACGCTAGGCCCTGATTGAAACTCTGGAGTAGTTCTTTCACTACTTGCTGTTCTTACACGGTGTCTCTTTTAT-CTGGATTCAGTAAGTGAGAGCTATAGAACACACAGGATTAAGAAGATCTGGCAGAGAATGGGACATTAACTCTTTAGGAATTCTCCTGAGGCTGTCAGGGCATCCTTTTGAAAAAGCAGGGTAGTTGCTTCTTAACCAGCTTGAATCCAGAGTCACCAAGAAAGTTTCTCTTTGTAGAAATTTCTTG-TTCACAAATCATTCAAAATGATGTTTTGAGGGCACTGACTTTCTGAGTTCA----ATGTTTCTGTGTCA-AAATATCAAGGCGGATATTACAATTTATGACTTTAGTACCTTGGTATGTTGACCACTAGGT---TCTGTGA----------------TTCTGTGCTTCAAAACTGT-CATCCCCT------TTCTG-----------------------------------TGCCCATGACCTTG--------------CCACTA----------------------------------------------------GGGGACAGAGCATTTCAGAGTCCTG---CCGCACTTCAAGGGCA--------------------------------------------------------------ATGGTGACAGTGGACTTTCAAACTCTGAAGATCTGACACAGTCCAGCGAACCCCCCTCTAACAGGTCAGGGCATCGGAAGAGGGTATGTCTTACTACATCTAATTCGCTCGGGGAAACAGGATGCATAGACATTCTTTAGAAACATGCTTCTCCTTGGATGACTTTGATTATACTGATCATTATCATGAACCCCTTTGCATGTGTCTGGAGCTTGGACATCCTTCCTGTTGAATATTCCTTGAGGTGACCGCAACAG-GAGGGCGTAGAAAG------GGGACAAGATAGTGTGAGATAGCAAAAAGCTGCAAAAGGtgtgggaagaaagaaagaatgaagcacAGTCTGTAGGTCC---------TGA-----GAAAAATCTTGA-------GTTCAGCAtccaaagaaggagaaaagaaaacttaaatattCACTCAGCCAAgacaaatgtttcttttaaagtcTCATAATGTACTATTGTGTGGAACATATCTCATAGATTAATGACCAGCTGGGGTAAAAGCCTGGAGCCCAATTTTAAGCTAGTGATAAATATCCTGGATTTAGAGGATTAAATGTTTTTGTAGCTGAGCtatattttatgaaatgat-aaaagcaatTATCCTACCACCTATAGAATCCTCACACACTGAAGCCAAACTTAATTAGCTGTATCTTTCCAGATGAAATCAGAGGGAGGCg--------------------------------------------tccctcccttttccctttccagcattttctgatatattttcaCAGCTAATGCctttcacctatttttttttctctaatttctttctcttgagcaAAGTCATCCTCATTTCAAACATGAGAAACCCCGGTGGgtggagaaaattattttataaagccTAATGCACTTCCAAGTATGGTGAAGCAGTACAAGTTGTCTACCAATTAGAGAGTGAACAAACCAGTCCATCAAATGCCCTAATTTTCTAGATAGTCTGGGGAGCAACTCATGTCAAATAAATGGAATTCTTAATGAATTCAAAGAGAT-------------------------------------------------------------------------------------AAAGTAC-------TTTTGC-------------TTGTTTCCTATCCATTGTCTTA-----------TGGTTACCTTCTTCTAGAAACCATAAAGCCATGTG--------------------------------AATATGTA----------------------------ATCTAGTTGATTT---------GTTCATACATTATCAAAGCTATTACATGGAAAACCTAGAATATGAATATATCATTCCTCTTCCCTGTAGAAACTCTGA----------AGTTATGT-GAGTTGTAATATTATTAGGTAACTCACATTTAAATCCCAAGT-GGGGAATTTCTCTGCAGTATAACCCCAGGCAAGTTACTTACCCTATTTTTACCTC---TTTTCTCATACAACAACCCTATCAAGGTTAAATGAGCTATTTGACATAAAGTG-------------TATGGtgatacatattttatttgagaGACTCTCAGGGAAATATTTTCATAACTTCAAAGGTACAGTGAAGAGAGAGTGCCCAAGGAATATTGAATACATCTTCATATTTTACATTATTCTGAGTACTCTCATAATGACG---CTTTCCAAATCATTACGATTCAGGttgcttt-------tatttatgcttttggttATGAGAAAGAGATTAGCATTCTTGTAACACAGAAGAAGAATCCAGAGGGC-----ACAGTGATTAACTCAGTGTGACGTAGAGATGAAGGCTGGATGATAGAGACACATTTCCTGAATTCTGATTCTGCTTTTGCCA-----TTAATAGGTTGAACAATCCTGGGTAATGGAACTTTTCTATG

a score=18727
s chr3           156823394 1509 + 160039680 TTCACTCCAGGTCTTTGTCTC--AGTAGCACTATGTATT------CACAAGGCAAACTAAACTTCTGCAAGGATAGCTGGGG---------ATAGCAGAACTGCTGTTGATTTTGTT-TGCTGGGTATAA---AACTTGTCTGAAAGTCCAA-----------GCTCAAAGATTCTTGGAAGCAGT-GAACTATGCAATGCTTGCTTATGGTGGAGGAGCCCCTTTTACCCATGATCCAAAGGGACTAACCCTATCAGCAC-AGACTCCTGCAA--------GTCTCTACTAAGATTTTAATCTGAATACTTTTTCTCTGTAGAACGCTAT---TATTTTTTTTC-TTTCAGACTGTGTGTGTCAAATTATCTGTATCTTCA---TCAATGTAAAGTGGAGAAATTTCATTTTGACTTACTTATTGTTTTGAAATAATT--------------------CTAATTTTGAGCTCATCTCTTT---------------GCTTGGATTTTGCAGAAATCCTTCCTAAGAGCAGAAAAAAAAATGACGTTTACTGCAAACTGTTTTTAATGCTCATCAACCGATCATGT------CCATGTTTCTTGAGACTGAAC----------AGTTCTGTCAGTT------------TTGTCAGATGCATGTAGCATGTGCATGGGCTTTGTTTGTTCT-CAGAGTTCATGAGAACTGTGGGCACATCCCCAGGAACAGAAGGC------AGTGGGCCAGCCAGTTGTCCACAAACAA-----------GATAGAAACACTCATTTT---TTCCATCTGTACTAA---------TATTTTCTTCTGCATGGATGTTAATCTCTCAAGGGTTTCTCCCCTTGAAATACACTTTTGTACATTTTTCTTTGTTTATAATTGCTGCTATCTTCTTAAATTAATCTCAGCAACAAGCACTTTCTAACTGAACAAAGTTCAGTCAGCTAATTCTGTCTTGTTCTGGCTGTCCCTCTGTTTGAGTGTATGAAACCAC---TTGGAGATTTTCCGTATCCAAACATTGTGCAGCCTGTTCCATGCTAATCAGTCAACATTTA-TGAAACTCGGATAAATACTCAGCCTTGATGGAAGAATTGTAGAATCGTTAGAAGGAAGTAAACGATGTCATAGATAGTTTTACAAAGCTGGAAAGACAAATGGAAAATATG--TCAGACATTTAAAAATCAATAGCAGTATGATTTCAGGCATGAAGAGTA-------TTCAACTGAAGTGTTAAGTCAGAATTCTAGGCTAGTTATACCGAATCTTTAAAGGCACTCTGCCCTTGT----------CCACACCACATATCAGAGTGAAGGTGCCTTGGTTCCTT--------------------------GATCAAGGAGATATG-GGATTCAGGAGAGTGTCCTGTAGCT-TGATAGAAGTTACTGATAAGAAAAAT-----TCACAGAAGTGTTTAC--ATTCAGTATTGACATTATAGGTGCAAAG----TTGGATAATATAAACAGTTTTTAGATATGT---------AGTTTGC--ATACTTGAAGAAAGAGGTTTCAATTTAAAAATTCAAGTTTTTAGACAGTATGG-------AATTTTGAATTATCCTGAAATTCTTTTACACTTTTAATGTATAAAGGTATACATTTTGTG-ATTGAAAGATCCAGATGGTAACAAGGTCACAAATCACTATTTTA
s HiC_scaffold_1 143992486 1649 + 233722169 TTCTCTGTAAGTCTTTTCCTCCTAGCGGC-CTATGCACTGCTGTCCACA---CAGTCTGAACTGCTGAAGGCTTAGCAAGAGCACTTTTAAAAGGCTCGATTGCATTTAATTTGATTCTACTTGTCATAAGCAAAACTGACTCAAGGCCAAGCCCTGTGGAAGGCACAGAAATTTTTGGAAGATGTTGAATTATTCTCTGCTCTGCAACTGTAGAAATGAC----------ATGatcaaaggaaataaatcatGCCACCGTGAAAGTcctgttttatttgttgttgctGCTAGATTCTAAAACTCACTAATTTGATTTTGGGAAAAGAAATAAGTATttcttgtcatttcatttttcagatatcA--TTATGTACAGTTTTGCATTCAGTTCATTATAGCAAAATTGCTATTTCAcatattcattaatttaaaatcattacattttaataacttggcatctaattttacttttttttttttttttttttttttttggcttagaTTTTGCAGGTAT--TTCCTACAATGGGTAAAAGCATT----TCAATGGCGAAGTGCCCTCATTGATTAACAAATGATTATGATTTGTACTGTTTTCTATATGACTGTGCTTTTAAACGTAATTTTAACAATTACTACATTAAACTTATCAAATCCACCTAACTAATGCAGGGGTTTTGCTTTCACTATAGGATTCATAAGAAC------------CACAAAGATATAAGGCTCGTTTAACACCAAAGCTAAGCTCCTACAAGGAAATATGTCCTGTGAAATGTGCGCACATTTGGAGTTCAAAAGATACAAAACAGAGcaccattttcattttcttggatattTATGCCTTCAAAGATTCTCCCCTTGAAATGAACTTTTGTAAATGATTGTTCATTTACACTTGTTGGTAGCTCCCTAAATTAATCTCTCTGCCAGGTGCTCTCTGATTGAGCTAAGTTGAATTAGGtaatttggctttgtttt-gttgtccCTCTGTTTGAGTAGCTGAATCCACAGTTTTAAAA------GTATTCAAACACTGTGTAACCTGCTCAGAGTTAAtcagtaaacatttattgaaacCCTGCTATATGCCCTGCAATGAAACAAGAATTGTTATACTGTTTGAAGGAAATAAA-GGTGCTGTTGCTAATTTTATGCAACtggaaaagcaaacagaaaacaggaTTCAGACATTTTGAAATCAATAGCCCTGTCACTTT--GTGTGAAAAGGAATTTAGCTATAATTAAAG----AAACTTGAATTCTCCGCTGGTTG---------TTGAGTGACATCAGGACCCTGTGTGTAATACCCTGTGTCaaataaaagagcaaagg-aaTTGGGCCCctttgaggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtgaggatTAATGCAAGAGTGGTTTTGCTGTGATGAAAGTTA--AATTAGAAGAACAGGAGCCATGGAAATGCTCATGGGTTTAATATTAACCTTGGAAGTTTAAAAAGTTTcagtctatttcatttttttatagattggctttattttgaatttgtaaATGCTGATAAAAagacttttcattttgaaaa-gcaggattttatttactgttgtgctttttaatttatatcaTCCTGTAAGCCTTAT----------------------TATCTTCTGTACATTGAATGAATCAAATAGTAACAGTGTCACAGTTACATTTTTTA

a score=34763
s chr3           156833347 1263 + 160039680 AAGACACAGTTATTGTGTTTCTGATTTCAAAGC-AAAAGCAACAATAAGAAAATAACAAAAATAATAACGATAATATATAACATCTTAAAATGGAATGTCTACTTAGGAGAAGACGTAGGTTAT----GCGATCACTAGTCTGAGTTCTAACTCATAAATTACCTCAGCGTTCAGCTCTATTTGGATAAATAGAAATTTCACAGCACCCTAAGTATA--------CCAGCCGAATATATCATACCTATGAAACAAGAAATAAAATGATAAAATTATGGCATTTAAAAAAGATTTTTGAGATCTCCTCTAGTAGAACAGGTACTTATGGCTAGTGAACAG---AGAATGACATTTTC-CACATCAGAGAA-CAACATAGATAAAATTTAAGTTGCAAAAGAAGGAAAAAA-----------TGAGATTAAATATAACTAAGTTCTTTCTAAATTGATTCAAAGTAAATCAAATCTAGCAGAAATGTTCTTGAACAAAG-TGTCTCTGCAGATGG--CTGTTTGCATCTCCGCTGCCACATTTCTCTGCC--CCGCGCCCTCCCCACTTCACTAACCCCTCTGAGCTTCTGGA-TGACAAGGCTTCCTTAGGGAAGATACTTTGTTGATCTAGGTGTCCCAGCCTCGGGTTTACTTCCATAATCTGCCATTTTAAATTTGAAAAGCTTTGTAATATATCAGTAATTAATGCATTTGTAACCTCATCTCTTCTAATCACTACAGCGCCTGTTCTGCAGCTTGGCACTCGTTAGCTCAGGCTGCCATTCACCTATAATTTATGACTAGCATACAATTATGCATTATCACTGCTCAGAGTGATTGCCATACTGCATGTTCCTAAGGTAATGACATGCAACACTCCATGGTAAATTGTGCAGTAGTGGATAGTTCATTTCTGTCATTTATGCTATTATTTTCCTAAAACCAGACTCAAGAGGGTTACAT-AAACTGTGAGTACTTTTCTGAAGTGTGACAGTGGCTTATAATGGCCCTCACAAGGTGAAGGGGGGCAAGGAGGGGCAGGGGTCACTGATTTAGCATTAGCAGACCTACTGGAAAGCCTGAAAATCATGGCCATAGGGGCACAACACACAGCTGTAAGGGCTCA--GCGATTCTC-CCTAAAAGTGCATGGCTGTGTTCTAATGAAAGATTGAAAATACTTTATCTACTAAATTGACAATAAAGCCACATATTCCAACATTCAATAATATGAGATGTGTCATTTGCAAATGAACTTAATTAAAAAGTATCTAGCCAGATGTGATGGATTATAAACCAAA
s HiC_scaffold_1 144002852 1224 + 233722169 aaaatgtgtttattctaTTTTGAATTTCCAGCCCAAAAGCAACAATAA----------------ATTACGGCC-TAGAgtacattttaagaaaaagagtCAGCT--GGGGAAGA-----ATTATTGCCATAATCATTTATTTCAGTTCTACCTCATAAATTACTTTTGAGTGGAGttgtttcaaaataaacagaaatttcttACTATCTCAAGCATAAATAAGTACCAGTTGAAAATATAGTatatagagaaaaggaaataaaattctatCTATTCGGTA---------GAATATTGAGATCTCC---------ATAGACACAAATG-CTACTGAGCAGTTGAGAGTGACCTTTTCACACATCataaaagcaagagaaataaaattcaaaatgtaaaatgagagaaaaaaaaaatgtaactgagATTAGGTACGCCTAGGTTGTTCCTGAAGAGGTATAAAGTGAATTCAACCTGACAGAAGTATTTTTGAAAGAAGGCATATAAACTGAgggatttattttgttcttaatatcTACTTTCcgcttctttccatttctttcccttaTAATAAACCTGCATAGGAGGCAGGAGTGGTAAACTAGCGTTAGGCATTTTACTTTGCAGACATAGGGGTCCCAGCGTGGTGTCTATTTATATA-CCTGCCATTTTCAAATTGAAAAGCTTTGTAATACACCAGTAATAAATGCATTCATAACCACGTCTTTGCTAATCACTACAGCGCCTGCTCTGCTATTTGGCTCTCATTAGCTGAAACTGCCATTCACCTATAATTTATGACTAGCATACAATTATGTGTTATCGCTACTCCAAGTGATTACTACACTGCGTGTTTGGGAGATAATGGTATGCAACACTCTATGATAAATTGTACTGCAATGGATAGTTCATTTCTGTCATTTactctatcattttcctaaaaacagTCTCAAGAGACTTACACGGAAATGTGAGTACCTTTT---AAAGTAATAA-GGTTAGCACTGTCCCT----------------GTAAGAAGAGAGGAGAACCAC--ATTTAG---GGGAGGACCAA--GGCACCTCTGAAAG-CATTCTGatagaagcaaaacagaaaacatgaagaACTCCCTTCGAATCTTGCTTAAACATGCAAGATAATAGTTTGATAAAAGACTCAGGGTTGTTT-----TTAATTTGACAATAAAAGCATCTGGTTTAACATTAAATAACACTGAATGTAGAATTGATAATTGGAGAAAAATCCAGAGTATTCATTTGGACG-GGTGcattaaaaaccaaa

a score=23858
s chr3           156835083 1296 + 160039680 CTTACTATTACACACATCTAATTTTTGAAGAGAAAGAC-ATAACATCCCAGAGTTACTAAGGACAGTAGACCACTAAATTGAAATGGTAGGCCAGTGAGGGAACCAGGCATCCCGGAAGCACATTTGATT------GTGACAACCTGAGAAACCTGCCTAGTCTGCCTGCCTGAGGCTGTTCTTCATAGTTACAGCCATCAGCTG-------AGTCTTCTGTGCTACTGACCAGCATTTGGTCTGTGAATGCCT-------CCATCTCAGCATGTGGATCTCGAGTGAGACCAGTTATTATGTGATAGTGAGAATGCGGACTATCGTCACTATATATAGT-CTGTGCAGCCACTTCTCCTCCAGTCATCTGTGCAGGGTTTATTT---GTCATGAGGTGTGAAGATAATCACACAACAGACCACCAAATGTTTGTGCTATAAACACTGTGAACAAAATATGAACTTCAGGGTTATTTACATT-GAAGTAAATCATGCACACAAAGGAAGAATATGAGCAGACACTTCCTCAGGATAGAGTCACTAATTCTATACATTTTTTTCCTTTATTGAAAATATATCAAGTTAGGTTTGTTAGTCCCTGAGAAAAGataattattt----cataaataattat----------taattttGCTGTGTGGTAAAATTCTGTAAAATTTCAATCATGCACATCTGTAATTTTCTCAACTGGTCCATCTTTTAAATTAACTCAAAGGAACATATGATCATATTCTTCAAAATTAAAATGTTAGATTTCTCTTTTCCACAAAATTCTGCAGTGAT--ATAAAA--CATGGGCCCAACCTCCCTGAGAG----GCACAGGAGAGG-AATTTGTACGTGGGGATGATGGTTGAA-ATATATCATCTCTTTTCTCCCGGCCACTTGCTGTGATATGGAC-----CACCCCACGTGGCCTCTCCCTGCCATCGTGGTACATTT-CTGGCACGGTTATGGCATTTATTTGAAATTTTCAAATGTCATATTATTTAGCCATTCATTACTTTTCTGTAAGTGCATCTCAGCACAATAATG---TGCTCTCAGCTCTTATGTTCTTATCAGACACTATTACATCAGTGGAGAAATTTTTGTTTCTTTCTCGGGCCTGAACAGTTCCTGAGTTCATCTGGAGTCTCTGAAAGGGAAACAAACAGAACCCATTATTTCTTGTCCTATATT-TCAACACAGCTGGTGGAGTCTAGATTTATCCTACAGAATATAAAGCCATAAGAAAAATAACTTGGACACTTGCATGCTCTCTGCT-AGCATAATCACATTAAACATTATTGTGAAGGGTCttacttatgtattcatttatttgttc
s HiC_scaffold_1 144007038 1282 + 233722169 CTTTCAATTATCCA-ATGTAATTTCTGAAGGGAAAGTTGATAAGTTTCCAGAGTTATTAGAAAGAGCAGATAATTGGACAGAAGTGTTAGCAGAGTGAAAGTGCTAT---CTTTGAAAGCACGttagttttaaaatgtgacaaTCTGAGAAATTTAC------TGCTTGCTTGAAACTGTTCTCCGTAGCTGTAGCATCTGGCTACTTTTCAAGTATGTTGTGTGACTGATCACCACCATTACTATACgggctttttttttctacttccgCATGTGACTGTCTAGTAAAACTGGTAATGATGTAATACAGAGGACATT-AGTATCAGTATTAGATTTAACACCACGAAATCACTTCTGCTACACTTCCATGTG-----GTTATTTCCAGTCATTTAGTTttgagaaaataatataatgtgGCATCAAATATTTGCGATAT------------------------TT----GCTCTTTACATTCGAAGTAAAATAAGTAAGCTGAG-----ACATACCCAGTGTTATCCCCTAGGTAAGTTTGcttaattcatatatttttctctt------ggaaTTCATCAAGTCTAAGATGTTGATTATATAGAGGTACCTTTTATTTACTATATACATAATTATGAGAGCAGATTAATTTTGCTCTAAGTTtctaagtttaaaaattagaatcatGTGTGTCTTCCATTTATTCAATTTTCCCATGTTTTTAATAGAATCAAAGTAAGATGGGTTCTTACTGATTAACATTCAAGATTACAGTTTTCCTTCCCCAAGAAGGCCTATGATGATTTATAAAATCCATTTGTGCTATC-ATCTGAGACCATCGTAAACCAGAAGTCACTGGTGCCCTTGGGTGATGGTTGGACAGATcctgtctgtttttcttcctctgcctGCTTCACTGTGAGTAGTGATACTCAGCATGGACGTTTG-TCCCACCACCGTCCATCTATTAGCA---TTGTGGCATTTATT-AAATTTTGCAAGTCTAATGTCAGTTCTCCATTCACTCTTTTTTCAAAAGTGCATCTTAGTGTAATAATCATCTGCTCTCTGGTCTCATGTTTTTGTCAAAACCTATTATATCAGTGAAGAAATCTTCGTTTCTTTCTTAGCTCTGAATATACTCAGAGCTCATTTTGGTCTTCTAAAACTGAAACCATCACAGCTAATTATTCCTTGACCTGTATTAGCAACCCGGCTGGTGGAGCCCAGATTTAGCCtgttgaatttaaaattataatacattt---------ttttgtgTACT-TCTGCTAAGCATGAGCGTATTAAA---TATTATGAAGAATTTTAA-gagctgtttattttcttgtcc

a score=6367
s chr3           156836577 299 + 160039680 ATTTTACATGCTATTGTTTCTCACATCCTTTATGCATGCTCAGCCATGTTTCTATGTTTTCAAACCATAGTTGGTTTTTTGCGG--CATTGATTTCCACTTCTCTGCCACAGAGTAGAATGTCAGACTGAGAAGCTACCATTCCCGTTGGCTCTCATCAC--ACAGGAACTTACGACT--------------TTCCCACCT------GTGTAA-------CCAAAGCAGGGCCGACTTTC----------------------AGCAGGGTA--------TCCAC--------TTAGCTTATTAAAAGACCACTTAATTATTTTATCTAAGTTAGAGAAATTTCAGTATTTATAATTTGCAAACTACTT
s HiC_scaffold_1 144008292 365 + 233722169 ATTTTAAgagctgtttattttcttgtcctgTAGGTACGACCGACCACTTTTGTGTGGTCACAAACTATA--TGTTTCTTTTCAGTCCTTTCATCTCTGTTGCTGTGCCACAGAGCAGAAAGTCAGAGAGAGAAGCTCCCATCTGCATGGGCTGTCATCACCTGCAGGGATTTTTCACTTGCTACTGATGGGCTTCGGACTTGCTTGAGTGTAAGCCTGCTACAAaacacaggcttttttttttttttcctccccttgcTGGGAACATGGCATATTTGATTTTACatgaattttcacttttttgaaagaccatttgattcttttacataagttagaaacaatttaa-atgtataattttcaaaatattt

a score=36124
s chr3           156839562 736 + 160039680 TAAGGGTGAGA-GTAAAAGACAGAGTT-------AGAAAAAGT------ACTTAGGAAATGTGGAGAGAGCAGGCTAAAAATTCGGG-------------CTTTTAAACAGTGGATCCTTTGAGAAAAATGCATGGGAGCCACTTTTATCCTCCCAAATTAGCATCTGTAAATGCAATAATCAGATCTGATTTAACATATCATTATCTGAGAGATAGGTGCAACTTAATTTCTAAAGGATTTTTAAGTATATTGAATGGAGCCAACCAGGGCAGATTTTCATTATAATGTGGTATCATTATATCTATGATTGCAGGCTAATTCCCCACTTATACGGCCTGACCACTGACCAGGCTAGATCAAGAGGGTTTAATTTCCTTTGTAAATGTTCATTCCTGCTCATTTTACATGAGAGACTGTAAAATGGTAGTTAAATAAGGGAAGAAATCA-TTTTAAAGGGGGAGTACATGAAAGCCACCCCCGTGGATTTTTGTCATGCTGATTATATACTTCCCCCACCAATCCAACCCCCCCTTACATAACTCTGTAAGACT-GGAGTGAAATCATGTTTTCTCATTTGTTTCAAATAACCTTTTAAAGGATGCTGGCGATCAGGCTAACCTTTAGTATTGACAAGTATGCACTAGACACAAACCTCCAGAAAGGGTGGTAACAAGACAGGCTTCCCTCAGCCTGT----GCTGACATTTTGTGGTTCATCTCTTTCTAAGACATGAC-GCCCCATGTTTCATGGAATCATTGCTTTG
s HiC_scaffold_1 144013732 762 + 233722169 TGAGGGTGAGAAGGGAAACAAAAGGTTTACctccaaaaaaaatcaagaaattcagagaatttGGAAGGAATAGAGTAAATgcctgagggttttttttttttttttaaacagtgtatCCTTGGAGAGAAATG---AGAGgcattttttattcttctaaatTAGCATTTATAAATGCAATAATCAGATATGCTTTAACATATCATTATCTAGGAGATAGGTGTGACTTAATTTCTAAAGGATTTTTAAGTATATTGAATAGAGCCAACTAGGGCAGATTTTCATTATAAGGTGATATCATTATACCAGTGATTGCAGGCTAATTCCCCACTTATGCAATCTGACCACTGACCATGCTAGATCAAGAGGGCTTAATTTCCTTTGTAAATGTTCATTCCTGCTCACTTTACTTGAGAGCAAGTAAAATGGTAGTTTAATAAGggaagaaatcatttttaaagggAGAATATGTAAGAGCGAATGCAGTGGATTTTTGTCACAGTAATTACACATTTC-----CCATCCCATCATTCCCTGACAGATCGGTGTACAACCAAGAAAGGAATCATGTTTTCCGATTTGTTTCCAATAACCTTTTAAATGACGCCCAGCATTGTATTGACCTTTAGTGCTGACAAGCATACATTGGACTCTTGTCTTCAGAAAACTGGGTGCAATAATAGATCTCTCCCCCGCTGTCTTGCCTGACACTTTGGCACTCATCACTTTTTAAGACTGCACtgaatttcttttcataaaaGCATTACTTTG

a score=25316
s chr3           156842500 899 + 160039680 TGCTAAAAAGCATGATGGCCCTAAGGG--AAACGTAGTAAAAAGGAGTA-TGCAAGCATTAAAGC-CATCTAAAACTTTCATTTGTAAAATGTCCTGGTTATGTATGCTTCATGGATACGGGTGGATAGAAACTTCCTAGAAAGTTCTTCCATGACCTATGTTAATTACGCAGACTTCAGTAGAAATTCCATGCATATGGTACAAGAGGCAAAGAGAACTTCAAAGAGG-AATTTAAAATGGACATTAAAGGATCAGTGAAACCCTAAAGTGTGGCAAATAGAATGAGGATGTTTCAGGGAAATCCATCATTAACGGCTCCATGCGGTAATTATTC-------------GGAACTGAGTTGCCTGTTACATAAAGGTCATTTTAAAAGGTTC-----TAACAG------AAGTAAATGAAAGCTGGCCTGTAAAATATTG-TCAACTCCAGGACAATGCCCTTGAATTTGATTCTTTGTGCCGTGAGGGGTTGTTTGATAGGTAGT------GGAACTAGGTAACAGAAGTAGAATTTCAAGA---------AAATTTATCAGTAGGCAGAATGGCGGGATTGTTAT----------------------AAAAAACTGT-ATCTTGCTTG-TGAATTTTCCATTTGAGCTTGGCAAAGCCAGACACAACATGCTGTTTACACATAAACGTTGGCTGGAA--ATATTTTATTCACATGGACATTTTATCTATGTTAAATAATTTTGTATTAACATTGAGATAAGTAGATATGTTCAATTTGTTTCAAACCCAATTAACATCTTCAGTGTGATCACTGTTGGGGTGTAATTTTTGAGAATAGTTTTAACCACATAGAGTGGTTAAACCTATCTATTAGTATTCTAAACCCTCTAAACATATATG--------TTATTCTGTTCAACTGTGGAGAAATAAGCACTTCCTAGTTATATATCAGTTTCA---TTCAGCTATTTTTT
s HiC_scaffold_1 144016922 950 + 233722169 tgctaaaagaaaaaataccccgGAGGGCGAAATGTAATAGAAAGGAAAGCTGCAGGCGTAACATTTCATCCCACATTTTTCCTCATAAAA-ATGCTATACCTATATACTGCATGCATGTGGGCAAacagaaagttttttaaaaggtcCCCTGTGACCCACGCTAATTGTGCCTACTTTAATGGAAAATCTATTCATGTGAGATGATAAGGAAGGAGAACTTCAAAGAGGGAATTTAACATGGACATTAAAGGATAAATGAAGCTCTAACATGTGGTAAATAGAATAAGGACATTTCAGGGAAATCTGTCATTAATGGCTCTGTCTAATAActattcaggaaagagaaaagagaccaAATTGCCTATTATGCAAAGGTCATATTGAAAGGTTTAGGGGAAAAAGTCTGGAAAATAAATGTAAGCCAGACtgtaaaataatgtttaatttcaGGATAATGCCTTTG-GCTTGATTCTATGGGATAT-AAAAGTTATTTCAT-GGTACTCAGCAAGGAATTATGTAATCAGAATAGAAGTTCAGGATGCTGAATGAGATTAA--AGTGGGTAGAATGGTGGGAAGGTTATTCGGTACATTCTTTGAATGCAGAGATACTTGTCCTCTTGTTCACTGGGTCATTCTTTTGTA-TTGGT--AGTCAGTCACAatgctttgcttat-ttttattgtttgctaacaatatattttattcttgtagACTTTTGAtctatggtaaatatttttactgtatCAATGAGATCAGTAGTTGTGCTTAGTTTGTTTTCAACCCAATTAATA-CTTCAATGTGATTGTTATTTCAGAGTGAATATTGATAATTATTCTGGCCATATACAAT-GTTAATCTT-----------TTACAAA-----GAAATGTATATGTTTATCCTTTATTTCTTCCCACTACAGAAACATAAGTGTGTTCTTGTT---TATCATctccaaatattttctatttttt

a score=43033
s chr3           156846519 3121 + 160039680 ATGGTATCAGATGGTTCCCTGCCTCCATATACCCAAA----------------TAAAAAAAGGAAGTTAAATATTCCttaatta---tattttgataacaaaaat-ttaattaaaatGTAAATAGCTTTATTGCAAATAATATACCATGTGGAAGGCATACTGTAAACAAAAATTTTAACATGAAATCCTCAAGAATCAAATAATACTTGTCAACGCAACAAAAGAAAAAAGGGGCATTTGAAACGTGTCATTTCAAATACTTCAAACTA--CACAGATAATTTCAACAGCTGGTTTTATCTATATGTAATACCTGTCGTATATAACTAACACACCAGAGGAAGCAAACTTAAAGGCATTTAAAAGAAATGAAGCCACCAGC---GACTGGAAAGCCATTAAGA---CCTATTGTGCATGGGTCCACTCCTTTGAAAAAGATGAATTTGTTTAGTGACGAAGTAGGCCTTCCTGTGACTACATCTGGGTTCCA--------CAGGCCAGGTAATCATCTCTTCTCGAACACTGTTAGGTGTCCACTGAGGG-TATACTGAGTACCAGCAC-AAGAAGAGTCCTTC---TGGCTCTTGCCCTCAGTCTCAATCTCCTGGTGCC--TCTATTCAGAAGGCACCAAGGACCAGTGTGCCTTCTTAAAGCCTTTCCTTTGATTTGCTGTTACTGTTGTTGTTGAAACAGTTTTCCTGTTCTTCTCAATATTAAATGTGC----TAAACCTTCATGTTG-------TAAAGCT--TCTAATATGTGATCTAATATTTAATA----GGTAATATTAATACTACTGTACTTAATTCCCATACATTC--CTCTCTCCTGAAGTCTGAATCCGAAATTGCTAAATGAGTGTCTCCTTT-TGGTGATGCTGCCCATATCTCA----CAGGAAAAGAAAGCAATTGTGCGTGGTTGGTGCCCACCTGACCAGCCAGCTGT------------GACTCAAG-GTGTATTATGCATATTTATGTTT---------GACCCACAGAGCCCTTTACCTGCTCAATCT-GTGTTACATTGAACCTTTCATCTTTCCTAACTAACCATTGGGTCTTGACTATGGCT-TCCCAGCCTTAACTTCTTGGAATTATGTTGCTGTTGACAAAACAATCCAGGCTGTCAGGAGCTCTGG----------------------------------------TAGAGATAATCA-------------------AAGTTGATTCTAGAGt--------------------gaatggatggat-----------------------------------------------------------------agaatggatg----------------------------------gatgggtgaatggaaagctggatgTATATATAGGAAGATAAATCATTACATAGTTAGGTTGAT------------------------GAAGAAAACATCCAGAACACTGAT---------GTTTTCTGAAACTGGGAAAGTTCCCCGTAGCT-------------------------------CTGGAATCTTCTTTTCTTTATGTACAG-------------------------GAAACATAAGAT---------AGTATTTCACTTAACGAGTTTATAAAATTT----AAATTTCATTTAGTT---------------------------------GATTGTCCCATTTCACTGATGTAATATTTTTTTAAATGTCCTCATGAACACCTTTCAAGAC--------TGTCCCTCATATACCTGAACAC-ATCTTCATTGCCTAAAGAAAGCATTTCAAGCCCATGACATGTGCATTCATCTGGCTTTCATCCCTGTAGGTGTTAGGGTCATAGGGCCTTGCTCCTCCCTCTCCATCC---CATGCAGACATATTGCA----ATCACACAGCGACCCTTCCTAGTTTCT-CCCGTTCCTCTGTA-----CTCATTTTGGTCTCTCTTTTACACACCCATCTGTAATTCTGAAAATGATTCCTACTTATAGGTAGCCACCT-------TACTGGCCTCAT----------------TCTCTACTTCGTTTTCTTATTCTGATGTGATGATATATGAGCCACCCTCTTGGTGTTCATCAA---TCGAGGAACATCTTAGG-------------ATGCTATGGTGATC--TGTCAGATATTTTGCTTAGGCTCC-TTTAAGATTGTCAATGTTTTTGAAGCAAAGCATA--TTCTTGATTCTTTTAAATTTTTTTTGTTTGTTTACATAGACTTCAAAGGGAAACCACG-TGTGGGAATTGAGGTGGGAATGGAGAGTC--------------CTGCCATTCATTTGAAATATTTCTGTTTCTTTGTAAGATTAGAAAAGTACATTT--GATTTACCCTGTTTCCTCTGTTTAAATATAAAACTGGAGTTTGAGGACC---------------TCTGCCAACATGTC-----------------CTCactgagatggccaacccatcttgccagggccacacagcatctgttagataatgatgactttcgaccattgctaaAGATGGCAGGCAAATGTTTTCCATTATGAGTAAGAGAATTTGGCATTTGGCAAAATCAAAAGTATAATCTGCCAAAACCAGTTTTCTTTCATTAGTGGACTAGTGTATATTTCAAAGGAAAATTTTATCCATCCATTTATTTATAACTTTATAAAATACCACTTTAAAATCGTTGTGATACCCATAAAGTC-----TATATTTTATAGCCTATCCCCACTCCATGGTTGATTC-------------ACATAA--AATGCAAGCAATCCTTGAAAAAACTGGACACAATTGATCTGAAATCCTAAACA-CATAAAGATTATTAACTAATGATTTA----ACATAAAGAAGAATATATGGCGGTTTCTTCCAAGGGCTCATGATTACAGAGGCCAATTAGAGACAGAAAAAAAGATGAATGTGTCTAAACACTTCATCACCCATGGAGCCCTTT-GAATTAGGACTAAATCATGA--ATGAAGGAGCCCAGAAAACAAGAAAAGTGAGAAACAATAGGCCTGC---------ATTGATCGATCAGAACCCATCGTGGG-----TGTAGTAAAAGAATCTG-------ATTGTGGCTGTCGTCTTAATATGATTT-TACACTGCAGTTCCTGCTTAACCAACTTGCAAGGCTGCTC-AAAATAACGCCCTGTGAAAGATAAGAAAAGTGGATACAGTACATTTCGATTTTCATAAAGGATTCTGACAGCTTCCTGGGAGAGATTAATGGCCAAGGTAGAGAACTGTTGAGAATACACTATGGGGCCCTTTACATGGGAAACCAATTCAACAGTAAAAC--AGCATCTGAGCATAAGAATATTTCAATAGGAAAAGAATTTCAATT----TAAGCAATG-ATGTTTAGTGGGTTTTGTTTTTC----------TTAAAAAAATCCTGTCCATTGTTCTTCC------------CTAACTTATCATTTATGTGCCTTTG-TACAGTTAATTGTGCTGCTCAGATAGGTGCTACACTAACTATAAATTATG-TGGAAGTGATTATCAGCCTGT--TCAACAAGGAAA-GTGGGTGGATGTGAAGGCTGTGAGTGACAAACTTGCCTTT
s HiC_scaffold_1 144021396 3595 + 233722169 ATGTTGTCAGTTGCTGTCCTGtttctatacatttaaaattatccaAACAACTTTAAGGAATGGAAATAAAGAATCCATTAATTACCTTATCTTGAGAACAGAAATATTGAttagattcttaaaaaaaatctttagaataTTGGTT--GGCTGAAGATGCACTtccactaaaaatattttaggaaaattgtCAGCAATTAA-TGATGCTTGCCAACTCAACAACA---AAGGGGGAAGTTTGTGATCTATAGTTTCAGAGACTACCGACCATGCACATCTAATTGT-----TCAGTGATACCTATAAATAAAGCCTGATAAATATAAGTACTAAGCTAAAAGAAGTGATCTTAAAGACACT-AAATGCAGTGAGATCACAAAACAAAATTGGAAAGCTATTAAAAGTTTCCATTTTACATGATTTTACTTCCTGTCAAAGACTAAGTTTGAACACTGATGAAA---ACTTTGTTGCTACTCCTTCTC--TTCCATTAACTCTCATAACAGCCCTACATTATATCACCACCACT---------CTACTGAAGGCTAAACTTTTCAGTGACACTGAGAATTATCTTCCAGTTGATACTGGTCTTCCTCTCTGATTTCCCTGTAATATTTGACCCAGAA-----CAAGATCCAG----CCCTCTTAAAAC-TTACTTTGGCTTTTGTGTTAAGGT-------------ATTTTCTTACTATTTGCAACTCCAGACTTACATAGTAGACCTataagtttctatttttaaagctgACCTATT------CCTAATCTCTCACAAACTGACATAATTAgatctattgaaaataatttccaaatattaaGTCTTTTCCTAAGGACTGAGTTTATAATTAATGTTTTACTATCTCTTCTCTGGTGATACCACTTATAGCTCAAATGCAATAAATTAAAGTTATTATT----ATCTATGCTCTCAAACCAAGACTTCTATTCCGCTTTCCTAGATTTAAGTAGGTCTTGCAAGTGTTCAAGTATACAACTTCAGACATGTAGAGA-----ATCTGTTCACTCTCATCATGTGTTAAATGCCTCATGTTTTGGAACGAATTATTTTATCATGACCATGACTCTCTCATCTActtgttctttgaattttctttctttc--caaaccAATGTAGGCTGTAGTGACTTCTAAGATGATGATGCTTACTTTTAAGCACATATTCTGGCTATTTTAAAAATCCTCACTTTCAACTCCGATTGTACAAGGTAACCCTATGGTTTCCTTCATTTGTCTCTTTGGACTTAACCGATCCACATTTTACTACCTCCAAACAGTTTATTCCTATAATTGTTTACCTGTAGGTCTTATTATTCTGGAAATTAATGAGATTTTTGAAGCCATACATTTCCAAATCAGTATGGTAGTTAAAAGGGAAATTCTGAAAATAAGCAGCAAATTTAATAActacttggtaaagttaataatATACTAGAGGGATGAATGAATGGAAAGAACATTTAGAACACTCTCTGCTTTTTAATTCTCCAAAGGTGGGAGATTGTGTGGTGGCAAACTGGCTTAAGAAATGTAGGCAACCGTCAATTAGAAAGTTCTAGAACACATGAGCAGAACAGCTCCCAAAGGTCCGCAAGGGGAAGCAGAGAGtgctgtcttcagttcttctctGGATAACCCAAGAAGATTTGGGTAGATTTGGTCTAGACCTGATATCAACCTGACAAGTGAGAGAAACAAGAAATAGCTCCCCCAAGCTACTGTTCTGTCCTTTCAGAGTGGTCCACTCTCAACCTACAGATCGTGCATCTTGTCCTACTTCTCACTGATCATTATCTTCTCTGC----------------------AGAACATGTCCATTT-TCTTAcgttca-----ataaatgtaaaatttat---ttcatgttcTTCTTTATACTTCTAGTCATTAATTCAGAATGCATGATATTGCAGATCTTCCCTTCCTATTTTGtgcctttttctctgtttttctcttttcttggtcCTTCCTGTGAAGAC-------TGATTGTGTTGATAGCTCTTACTTACCTCTTGCTGCCTAAAATTTTCCTG--CTcatgaagagacaactcacatcCCTGATCTCTGTCATAATTCTACTGCAGTGATGTATGTTCTCTCTTCTGCAACTCCTTTAAAGATCTGTGTATCTTTTGGTGTTTTCATTGTGTATATCATGGTAATCACCATGTAAAATTTGACTTAGCCTCCCTTTAAGACTATAAGCATGTTAAAAACAAGGGATTATTTCatatgtcttttaa--ttttctgacaTCTTTACATAgaattgagaaataaattttgctGGTGGAATTGAAGTGGAAATTGACTGTCTCCAAATAACCATGCTGCT-TTCATT--GTTTACTGCTATTTGCCAGTAAGATTAGAAAGGTGTTTCTCAGTTTCACCTTGGTCTTCCTGTTTAGATACAAAAGTGGAGTTTAATTAGCAGTAATATGGGTGATTCGCCTGACATAGTTGCCTGCCCATTAATGGCTTATTGAGATGACCAGCTCATTTCACGAGGGTCACTGAGCATCTGTTAGATAATGATGACTTCCAGCCATTGCAGAAGATGAAAGACAAATGTTTCTCATTATGTGTAAGACAATTTGATAGTTGGcaaaatcaaaagcattctttgccagaaattgttttcttt------tggaccaatgtgaatttcaaaggaaa-tttaatCCATTCATTTATGTCTAACTCAATACAATGCCTCTTTAAAATCTATTAGCTTTCCAGAAattcctgtatttattttataacccatc--------attgttttttcttttgtattaagGACATGACAAAAGAAGATAGGCCTTTAAGAA-TTATATCCTATTCAT-GGAAATCCTAAAAAGCATGTATATGATACACTaatgatttagagaaaacaaaatgaaaaataagatagcTGGTTTCAAGTGGTCAGAATTAGAGAGGCCAATtagagatacagaaaaaaatgcccATGTATAAATGGTATGAGTTTCACGGAGTCTTTTTGCATTAGAATCAAGATACGAGAATTAAGGTGCTTAGGAGAGAGGCAAAGCCAGAAACAATGGATCCGTGTGTTTGGTATTGATTG--CAAACCCCGCTGTGAAATACTGGTAACAGAATAATGGGGGAGGACAGTGTGGCTGTATTCCTAACATGGTTTCTACAAGGCAATGTGTGCTTAACTAACTTGCTGGGCTGCTTGAAAATAAAGCACTGTGAAAGATAAGAAAAGTGGATATAGTGCATTTCGATTTTCATAAAAGATTTTGACAGCTTCCCATGGGAGATTAATGACTAAGGTAGAGAATTGTAGAGAATACAGTAAGGAGTCCCTTACAGAGGAAACCAGCtcagaaacagaacagagtatTCGaggataaaaatatttgaaggaaaaatgaattCCAAATGTAGTAAGCCTTACAGTTTTAGAAAACAATACATTTCATGAAGCCAATTTAAAAATGCTcgatttttattcttcctttcccaATTCTCTAATTTGTAACTACtatacatttattatatttaattatgaTCCTCAGATATGTTTTAAATTAAGTACAAATTGTACTAAAAGTGATTATTAGTGTGTGGTCAGCAAGAAAAGGTAGGCAAACCTGAGAGTACTAGATAATTCATTTGCTTTT

a score=93450
s chr3           156856666 5516 + 160039680 [encoded data, 5983 characters]
s HiC_scaffold_1 144033916 5596 + 233722169 [encoded data, 5983 characters]

a score=60549
s chr3           156869456 3534 + 160039680 ATTTTAATATACTTTAAAGTAACTAAACATTTAAGAAAGTTTTTTTTTTCTGCCATTGGAAGTC--TTTGATGTCAAATGGATATTTGTTTCAATTCCTGAGATTCCTGGCTTGGAAAGCATCT-ACAGCTTAGTTGTGGCTTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtctgtctatatatgtgtgggtatgtgtCTTTCTGTCTGTCTGTCTGGTAATATTGATTGTGTTTTCTGTTTCTATTTTACAATGGTTATTTTTGTCATTCATCTTACAATATCTTAATTTTTTTCC---TAAAAA------GGGAAAAATAACCATGT---TATACTTGTCAAATCCCAATGCAAAGTGCAGTGCTGCTATGAAAATGCCTGCATAAATAAAACATTACCAAACTTTACCTGCTC---TTATTTCAAGAAACTCTGCAAATAAAAGCAAAGTCAG-TGGAATAAATTACCTTCTCCTAGGA-TCCATTGTAATGTGATTTCACCCCTGAAATATTATTTTTCTTTCCTTCTCAAGTCATGTGTATAATTAAGTTATTACTG--GAGGCAATTAGAATCTTGCTATTTTCTTTAGTTAAATCTTAAACAACAGACCTCCTATGACCTCTATTTGCAGGCCAAGAGAAAATATATGAGAGGAGAAAAATTCAGTCTTCCAATTATATA---TAGCTTATTCGTGTGATGTGGTGTGATGAATAAGGATTTATCATGTGCAAGTTTAAAAGAAAGATGTGTACA--AATTTCAACTGGCAGGGTTTACTTCATAGAGTCAGGTTAACCCCTGTCACATGGTCTGTCAGCCCCA-ATCATTTCCCTTCTTAGCCCATCAGTGTTTTCTGGTTAGTGATGTGAACAGAGCAGTGAGAAGACTCACAAAAGCTAACCT---------------------------GGCTTCAGGCTCTCCCACCCAGTGTG-----TCCCAGGTACTCTGCGGT----------CGTGAAAAGTC--TGAGACCTGTGGTTCCTGTGTCTG----------------TGTTGTTTTAATTTCAGGCTCTGTATCAGCACACAGCTCAAGAATGCTCTA-CTCTGTCCTTTGATTG-------------AACTGTTGGG---TGAGAACTAGGGCTCTGGGCCTTTTTAACTCACAGACATGCAGAACATGTCCTGGGAACACTAAG-ATTCAGCCTCATTTGTTAGTTGGGTAAAGGTACATTTTTTTTTCTCCATGACTGGCATTATGCCAGCC-CATTGCTTAAACTA--ACTTAATGTAGTGATTCTATCTTTAAGGCATTAGTACCAGGAATGCTGACATAACAAGAAAAATTTAAATTCAAGGGATTAGCCTTGCATTTCTGACTTGGCTTGCTTATTTTCACTCTGGGTCCTAC-ATCCTTATCCCCTGCTAATCCGCAGCTATTCACAAAATACAGGCTGGTGATTGCATGTTGAAGTAAAAAAAAAATAATAAGTGAGATACCAGCATTTGGCAAAATGTCCTAGCAATGCTGTTTTGAAGAGAAAAAAAAATTCTTTGCATGAAAGAGAGTTAGTTTGAAAGGTCAGAGCCAAGGGCCCTAGAAGAGATTTACATTGGAAAGG--AGCCAAGGA-------TGAACAATTAGGATCTCTCTCAGTTCT---GCTCATTATTGTAGGTTTCCT-TTGAGCCGATGGAATGCaaaaaaaaaaaaaaaaaaaaaaaaaaaGGATGGGATGCTGAAGACAAAGAGACAGAA---TTCTGAGCCATTTGTCAC---------------------ATGTATACAGCTGTCACTGTTTCCTTTGCTGAGGGTCTTCC------------ACATGATTCCACCATGTGTGTCCCACTCGGATCCCACTGGA-------------ACTGTAAGCCATTGAATCTTTTGCAAGATACTTTACCACAGAATCAACTGAGATACTCGCTTTAGCAAGTACCCAGGGTGCTTTTATTTATTAAGCATCCATTCTATGCCTGTATATTTGGATGCCTGAAAAATAGCATGACTTT----------------TCAAGGAAACATGCAAGCATCCTTCTTCTCTGTAAGCACCCGTCTCTGTGAGG-------TGGAAAACACAA--TGCCAGTGCTCAGGTCTCCTGTGGAAATGTCAGGAGCATTAAGGCATGGCTAGCA-GCTTCCCATTCACAGAATACAG-------------------------------------ACACGTTCTCTCCTCTTTCTCTGA---------------CACAACTGATAG--------------------------------AGTCCTCATTGATTTCTAGGGATTTCC-ATTTATGAGTGTAGACAATAAAGTTAAAC--TAAAATATTAGTAAAATTAATTACCCTCTCTTCTCCTGGGGAAATTCTATGTGGAAAGGAATGTAATAAATTTATACTAATGTTAAGGTTTTGAGCTCGAGTAATTGGAAATAATTCCGTATTTTT-GAACTCAAATTACTACTCTAAAATTAAAGAAAAGCGATTGTGCACCAA-------CCTC------CTCAGACCCACCTGATGCTCTTCTCTTGCTCTGCT--GTGTCTCTCCCAATAGGGGGCCCT---GTTGTACAAAGTCTTCTGGTTTGGGG-AACTTTCACCTACAGCAGGAGACACTGTCAAAAAA-CTAGC-AGGAAAGAGGCAGTG----AGTTCTGGGGCCTGTTCTGCCTCCTT-----GCCTGAGGCAGGGCCTTCCACACAGCTGTCCTGAGCCTGCTCTTCAACT--GACTGGATAGTCTATCCTGCCTTAGGCAGTTTATGCGGGAGCTCAGGATTGGACTCTGGGC--AGAGCTGC----------------CCTTGGGTTCTAGGAGGGTTGCCTGCTTGCAGGGCTGTCAGCTGTTCC-----GGTCAACAAGCCCGAGCTCCCTTACTTCCC------ACAGTCT-TGGTAGGTTTGCTTCACTTGAGAAAG----------AGGCACCTTTTGATTAA--TACTTGG-CCTGTTTCTATTTGGTTGAATCACTCCTGGTTGAGGATGACCATT-CAGCTGCCTCCTTCCTGTCATCATATTA---AAAGTCATGCTACTAAACCCT-----CTATATAGGCATCTGTTCTATGTAAAGATAATTGCTTCTTCACATTTATGAGACATATATATTGTTCCTAGGTCTAATAAGCAAACCAAAAAAAAAAAACAAACCTTAAAATTAAATTTACATATGTTGAAAATTCAGATTTACTAAACTAATTATCAGAAATTAAGATAAATGTAGGAGGAAAGCTAAAAGTATGCATAATTATTAAATGTTGGCATTTATGTGAGCCTTGGGCTTCTCTTTATTACCTTTTAGGGTGTAATTATCATTAGCATTTCAGTTGCATCTGTAATGAATGTTTAAGCTACAAATACAGCAGGGTATGAATGGAAAAAGAAATCTTCCAGTATTTAC-CTAACTGCAACTTTAAGAAAAACATCCCCCAT-GAGGCCACACAG-TATGATTGTGGGTCTGTTGCCCTGGGAACTAGGGGCTGACCAGCAATATCCTGGCCCATGATTTTTCCAACTGCACCTGTGCCTTGTGGGAAAAGCAGTGAGCATCAATTGGAAATTCTTC-------CCTGGCAAAGAAACTGAATCTGGGCAGGAGCTCTCTGTCACTAAAGCACATTTGCTGGACACATTC-CTGTGCAGG------GCATTATT-----ATAGGTGTTTAAGAACAACA------TAAAAAATAAGTA---TTTCTTTTTAAGGAACTTAAAA---TCAGGTGT---GATTCCTAGAGTGGGAGACAAA
s HiC_scaffold_1 144043460 3703 + 233722169 atttgaaaatatgttaaagtaATTAACCCTTTAAGCAA-----CATTTCCTGCCCTTAAAATTCCCTTTAATGATTAATGGATAGTTATTACAGTTCCTGA-AGCATTAACATGATTAGCGTCTCAAAGCTCAGAC----------------------------TGCACACGTTAATGCTTGGAAGATTATTAATTCTTGGAAGTAACTCTGAGTTTTTTATTGTATATGCATCA---AAGAATCATTGTATTTTCTGCGT-----------------------------ATTTTGAAGTATCTCTAtttataccaaaataaaaacccaacaaACAAAGTCATCATGTAAGTACACATGTCAAATCCCAGTGCAACATGCACTATCACtatgaaaatttcta---aaataaaatatttccaaccTCTATCTGcctcatttattttgagaaacacaGCAAATATAATTTAAGTCAGGTGGAATAATTTATCTTCTCTTAGAAAGTCATTGTGATGTGACTTGTTCTGTGGaata--gttttgtttcatttctcaaatCATTTGGACAATTAAGATATTACTACAGAGGCAATGGGAATTTCACTATTGT-TAAAGTTCATCTCTGAATGACATGTTT---GTGACCTTTATTTA-GGGCAAAGATAAAATATATCTAAGGACAATAACTGAATCTGGTGATGATATTATTTAGCATATTT---TGATGCAGAA--AACATTAATGAATTATGGTATATAATCTCAGAAAGGCAATGGGCCCAGGAGAATCAAGTGGCAAAGTTTGCTTTGCAAAGCTGGAGTGACCTATGCCTCAGGGTCTTTCTGCCCCACGCCACTACACCTCCatttctttcagtgttttctggc------------aagagcaaaagagaaacTCCTGGAAAGTGACTTATGTTACTACACTGTCAGTTTCTGAATGGATGTTGGCTATTGCACATAGCACGGTACTTCCTGAAGACTTTACAGTGAAGAGCCCACGTGAAAACCTGATGAAATCTGTCAACCTTATTTCTAGTATTCTTACCCTTCATGTTTCTGTACTT-----CTTTATATAAGTATAAGGTTCAAGATCTCCCTAACTCCACTCATGGGCTACAATTAAGAGGTTAACTCTTTGGGATTGAAGACTACATCT-TAACCTTTTTTCACTTCCACAATTCCAAAAC-TGTGTGACAAGTGTGAGGGATTCAGTGG-GTTTATTGGTTGGatacatgtacatgtattttTCCCC-----TGGTTTCATGCCATTCACTTTGTTTAAGCTGTGACTTACTGTATTGATACTGTCTTTAGGGCATTAATATCAGGAATGCTGACATGACAAGAAAG-TTTAAATTAAGAGGATTAGTTAGGTAAGCATGACTTTggttgcttattttctttctgggtcaTAGGATCCTTATCCTCTTCTAATCCCCATCATTTTACTAAGT-CAGATTCATGAT-GCGTGTTGTggtggaaaaaa--taataaatgagagtTTTACA----GAAAAAGACTTTGGCAATTTTAATTTGAgggaaaatataa----tttacatgaGCCAAAGTTCTGTACAGAGCTGTGTATCAA---CACAGGCAAAGGTTTTCATACCAAACGCAAGCAATGAACAtgtactaaacaaacaaaaaattattcaggtccttcattcattctttcaggtTTTCAATTGAGC------------------------------AAAATTATGGATGAACCCTTTGTAAAATAAATCTTGAacattttaaagctatttttcaGTGTGGAATAAGGCAGACCATGGTGCATACTGCTATTAC------CTCTGGTTAGAGCCCTTCTATTTTGAGGTAGTATAATCTGAAAAGGCATATTCAGT---AGTTTAACTGGGTAAAAACTTGCACACTTTAATTCAATACCTGCTGTGAAAATAACGTCACTTTAAGCTGCAC--ATCTATTCCTCTTGGCA-GTAAACAag-tgtctttgtttctttaagatctacttt-------tatcttttgaaaaGTCAAATATATGGCAACTTTCTGATTTACTGGAAAATCTGGAAAGCAATTAAACA-CATACTACACTTAAAGTGTCTTTTTCAGAGAAGGTTTCAATGGATGTTATAACCTTTCTGTTTCCAGTTGTCT------------AGTAGCATAGAGACATACCTTTCCTGTTTTCCAGAGTCAGAATATAATTGATATTGCTCTTATTGATTCCAATggattttttttatacttttttttttttttatcagtatcggggatagaactcacgactgcctgcttgcaaggcaggtgcttatgccgctgagctaaatccccagcccctccaatggATTTTTGATTTAAGCATATAGTCAATGAAGTTAAccagtaaaatatta---aaattaaagactCTATCTTCCCAGTGAGAAAGTCTAGGtgaaaaaagatataataaagG-GTATCAGTGTTAAGATTTTGAACtagaataatttgaaataattctaCCTTTTTTGAACAGTAATTGCtac-ctaaaattaaagaacagCAACTGTACGCTGATTGTTTGCCTCTTTGATCTCAGAGAcattccttcctcctctcctgctgCGCTTGGTATTACTCCCAGGAGAGTGTTCCCAAGCTATGCTA--TTTTCCGATTTCTGGCAGGATTCACC--CAGTGGGAGTCGCTGGCAAGAAAGATAGTGAAGACAGGACCAGGGGAGAAGTT----AGGCTGTTTTCCTCTCTCTGGACACCACAGGCAGTGTCCCCAGCAAGTCTGTTCT---CCTGGGCTCCCGCTTAGGCTGGACAGGACATCC-GCAATTGGCACAGCTTGCAGGAGGG-AGGATGCCACGCTGGGCTCAGAGCTGCTATCAACAGTCCTGACCTCTGGGTTCTGGCAGTGATGCCTG-TTGCATAAATGTCAGTGGATTCTCGCTGGT--GCAAACCT---CTCAGTTACCTCTCCAATGCAcattcaatgttttatttatcaCATTTGTAAACACCCCTGTATTAAACCCTTTTCACTTAAAATACTTAGATCAGTTGCTATTTTGCTGGATGGATTTTGGCACATACTGATCTTTGCAAGTATTTCCTACTTGCAA--ATATTCCCCAGAGGTATATTTTTAAACTCTATCTTCTATATAGGTAAGTATTTTACATAAAGATAATTACCTATTTACATTCTGAAGAAATACATCTCATTCCTGAGtctgaaaagcaaattttaaaa------caaattttaaaattaattacacaTATGTTGGGATCGCAGATTTACTAAACTAATTATCAGAAAGTAAGATGAATTAGGAGGAAAAGCTAAAAGTATGCATAATTATTAAATGTTGGCATTTATGTGAGCCTTGGGCTTCTTTTTATTAGCTTTTTGGGTGCAATTATCATTAACATTTCAGTTGCATCTTTAATGAATATTAGAGCTACAAATACACAATGGCATGAGTGGGAACAGCAGTCTTTCATTTTCTACACAGGCTGCATCTTTCAGAAAAGTAACCCACAGAGAGGCTGTAGAGCTGTGGTTGT--GCTTTTTACCTTGGGAGCTATGAGCCGTCCAGCAGGATTCTGGGCCACAATTTTTAGAGTTGCACCTGTGCCTTGTATGTGAACCAATGAGGAACAATTTGAGAGTCCTCTAGTAAATCTGTTAACGAGGCT-----TGGGCA--------CTAACACTGAAGCAAC----CGAGGTACATGCTTTGTGCATGCACCTTGTGTTACTCGGGCATAGGTGCTGGAATACCTCAGGTTTGCAAAAGAGAAATAGCCTCTCCCTTGAGCAAATTTAAAAGTCTCAGGGGCAGGGATACT--GATTGGGAGGCAAA

a score=21000
s chr3           156876201 729 + 160039680 GTAATTTCTGAAA-TTATATAAAGTTGCTGAATTTTGTCAAATTTGCTGCATCTAGTAAAACT-CTTCTGGATTAAACTATGTGGGAAA-CCATCACCCTGGTTTAATGGAGATGCCAGTGCTGTGAATTTTTGTCGATCAACTTGACCTTTGCACTTTGTCTGTCACACAATCTTCTGTGAGCAAACAATAGAATGGAGTGCAGTGATCTTGGCTCTGGGAAGATTTGTGGACTGGGGTTTGAGTGATCAAGACAGAAGTGTCACCATAAAAAACACAAAGTAGAAA----------------------ACTCACTTGAGATTTAAAGATACAGCA-----------GCATTCTCAC------------------AGTGCTCTGTGTATTCTTT-CAAGGTGGCATAAATTCACCCTTGAAACTTTTGACCTACTAAAGATTCCTGGATATAGTTCCTTTAAAAGCCTGTCTGGACAAATGAAAAATTGTGCTCAAGGGTATTTATTCAGCTTTTGAAGAGGCCT--TGAGGTGCTTGCAACAACTATTAGAAGCCAGCAGAC-TTCCCAGGGTTAGCC-TGTCGCCTGGAGCATGAGTCTACCCTGCATTCCTATGAGTGCTTCTCCTAGTCTCTAGAGGAGGAGGCACTGTCCTACTTTTTAAGATTTGGCTTGAGTTAACATGGC-ATAAGGAGTTTGGGCTGCCAGCTCACACA------TCCTCTATGGCTTTCTGTGTGTGATATGCTCCTCTTTTAACT------TACACATCAATGAGGTCTTCCTGAAAGC
s HiC_scaffold_1 144048635 776 + 233722169 GTAGTTTTGAAAACTTACATACAGTTGCCAGCTTTTGACAAAATCATTCCATCTAGAAAATTTTCCTATAGATTAAGCCACATGGGTGTTCCGTTGCCCTGGTTTAATAGATACTTCATTGCTGTGGGTTTTAATCGataaacttgaccttcaaacgtTAGCTGTTAGACAATCTATTCTGAGCTAACAGTACAGAAAAG------GAGTTCGGTTTTGAGTATATTAGTGAATTGGGGTTTGAGTGAACAAGAATGAAGTGTCAGGATAGCAA-CACAGAGAAGACAGTCATTTCCTCAGCTTCAGCGTACTGACT---GTTTTTTAGATGCAGCATACCTAAAAaagcattttgattttttcttttaaaacaggaaagctttgtgtttttttttcatagtAACATAAATTTACCCT-GAAGCTACTGACCTACTAAAGATTTCTGGAAATAGTTTCTTT-AAATCTACTCTGGACAAAT-AAAAATTGCTCTCAAAGGTATTTATTTGGCTAATGAAGATGCTTCACAGAGTGTTCG-AACAATGGTGTGAAGGCAGAAAACATTCCCAGGCTCATCCATCTCTCGAGGAGC-TGCGTGGGCTGTGCACACCTAGGAGTGTTTC-CTCGGTATCTA---AAGGAGACCCTGTCCTACTTTCTGAGACTGGGCATGTGCTGCGATGACTGCCAAACTTTTGCGCTGGCCGATCACATGGGCCACTCATCTCTGAC------AGTGTGACATGTTCCTTTTTCAACTTCACACTGCACAGTGGTGACATCTTGCTTAAAGC

a score=22111
s chr3           156877451  920 + 160039680 ATAGTTTCCAGGTAACTTCCTCACTTATAGCCAACA-TCTTTATGTTTCTTTCA----TTTTTGGTAGTGGGAGAGTAAAATGAAAAAGGA--TTCAGTTAAGTAGACAACTTAGTAACACATCAGCTCATTTTTGATGGCTAGAAT----------------CTTATTATGGGGCAACTGGAC-CATGATGGATCTAAAGAAAGGAAAACAATGTATTCCTGTTCTTATGGGT---------TCCCTTGTCATTCCACAGACACAGAATGTGGTATGATT-----TGTCTGGCATAAAAAGCGTTAATTTCTCCTCAGGTTTGGCATCTCAAAATTATGTGGTAGGTTGACCATAAGCACTAGTCTCAAG-----GGCTGAAATATCTCACAATCTTCTTATATTGTTGAAATTAGAATGTTATTGTTTTAAATTTAGTCATTCTTATGTTAATGGCAGAGGATTGTTGGTATTGTGACTAACTCTTCACAAAGAAGCACTTGGCACTAAGGGATTAGAGACCCTTAGGACAAATTGGAAAAATA----TTGTCTCAAAAATGCCAAGGGATTCTCTCAGAGGCTCCATCTG--------------------CCTTCATTTCTGTTTCCTCAGAGGAAATACTTTGTGTTACTAGACTTTAGCAACCACACATTAATGATTCAAGAACAATGGGCCTGAGGAATGCCAGCTCTTCTT----------------------------TGTGTGTGTATTATCCATTCATTCGTCTTAGAAGATTAGAAAGTGCTGAACGATT-GGGAGGAAGCAATCAGAATTTAAGTGAGGAT-AAGATAATAAAAGAAAAATTCTAATCTGCCAAGGA-----AGCCATTGGGCATTGGGTCT------TGCTTCCA---TTAATGTTAGAGAAGCAGGA------------GAAGGTTGTG----------------------CATTTAGAGGTGACAGAATACATGATGCCTTTCTTTTGTTTTCTGTAGTAAACAACAG--------GAAATGCAGAAAAAGTTTTTTTTCACATTTTA
s HiC_scaffold_1 144052944 1045 + 233722169 atattttccat-taatttattcactcattgccaaaaataattgtatttcatttaaattgtctttgaaatatggaagaaaaacaaagcagtaagttTGATTAGGT-GCTAAC---GCAACA-ATCACATCAATTTTGATtgatgaaataaggaatgaatgaAGTCTATGTGTGAGGAAACTGACCTCAGGATGAATCTAAAGCCAGGAAAGTAATGTGCTCCAACTTTCACAGCTGCCCTGCAGTCCCCTCTTATACCATA--CAAAAAGTGttagaaaattattatgggttgGCTCAAAAAGAGTTAATAATTGAGCAGGTTTGGCAATTCAT--CTATATCCCAGATTGAC-ATATGCTCTGGTCTTCAGCAAGTAACAGAAATATCTCACAatcttcttatattgttcaaatTAGAAtgcctttgttttaaatttagcaATTCTTATGTTAATGG-AGAGGAT-ATTGGTATTGTGATCAACTCTTCACAAAGAAGCTTAAACCACCGAGGGATTAAAGTCAT--------GCTGGGAAAAATATTGTTTGTCTTGGATACACCAAGGGGTATACTTA---GCTCtcactgttctttttatttattttttttcttttttccccttttctccagAGGAACACTTTATGTTGCTAGAGTTTGG-ACGCACATATTAATGACTATAAAATAATGGGTTTCATGAATGTCAGctctattttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttccatcTCTTTGTAACAAAGGATTGGAAAATGCTGAACAACTAGAAAGGAAATTATTAGAACTGAAGTCaggataaaaagaacagaaagaaaattctacTGAGGTGGTAAATTCCAATCATTTGGCAGTAGGTCTACCCCATCCTTTGAAGTCTAATCTTGAAGACCCAGAAATccaaaaacataaacattatgGGGACATCACATGTAAAATACAGATTTAGAAGTGATATTCTAT---AAACTTTTCTTCTGTTATCCATACTAAACAGGAGTAGAAAGTGTAATGCAGCAAAATATTACTTACACACTTCA

a score=26708
s chr3           156880700 1510 + 160039680 AAGAAAGTCAA-AGGACCAACATCTCTCACCAGAACAATGTTCAATGCTGTAAGAATGTTTTCAAAGTCTAACAGGAGGCACTGACTAGTACTTTCGTTTTGTTCAAAGCT--CCAAAACCTCCTCATATGAGGTCCCTCAACCTAACTCTGGAAGCTTAGAACTTTGCAAGATAAACCAAATACAACTTTGGATTTACGTTT-----------TGAATGAACAG---------------------AGTAGACATGGT--------TGAAA-----AACTTTA--------TAATTAATTTTCAAG--------------------------------------TGA---------------AAATGCCTGGACCTAAATTCC-ATTCTACCATGGATAATACTCTGATCTTCAGCAAACAATTAGAGTAGTGCTGTCAATCGGGTTTTGTTTGCTCTTCTGTAAAATGACAGTAATC-TGCTTGATCTTGGGGCTGCTGCCTCTGCATAAGGATATAA-ATATTTGATTGACCCCAGAGTGGCAAAA---CCTGTTAGT----------------------------ACCAAAAGCCTTTCTGAAGTCTCCCTGATTTTAAATGTCTTCAGTACTATAACAGCTG-----TTTGCTTGCACATTC--CAGAGTCGATGTCTGAAAAGTATTGAGATTGTGCCTG---TACAGAGCCTCACTGGAGTTTTACATGGTGTCTGTGCCCCAGGGCCCATGCACCACTCACAGGATGAGTGGGAGCCTCCACTGAGTGTGAACTGGGCAGCTTTTCATGTCTGAGTTCATGGAGTCAAATGGAATAAAACCAATGAGTGATGAA--AACAACGGTTTTAAAGCT---CCTCCTGTCCTTTTCCAACTGTTGAGTACATTTTTAATTTCTT-------TTTTATTAATCTCTAAGCCCTGATCCCATAGTGGACAAGACTGACTCAG----------AAGCAGATCTCTGGACTACAACTG--CTTTGTAAAACTACAGCTGATGACTCCTCTTAAACGTATTTAATATTTCTGATATAATATTTGCTATCTTTGTGAAGTTAATAAATCTTTCAAATGCCTTCTCAATATTAATATATTGATTCAATCTTTACAGTGTTTGTGAAGGCTAATTTATTTTCAAAGTCTGGCCAAGAGAGACTTACATTTAGAACTAACAAGATGAAT---CATGTGAAGATTTGTGCAAAGAGGAATAAAATAAATATTCAAAAGGCTTTTGAATGCATGC-AACCTTCTTTCCAGTTAAA----ACAAT-CATTACTCTCTTAAACTACAAGGTCTAGAATATGCTGTCAGTTTGGGCTATAAAATTACCCACCTGTTCT-GGCTACAGTTATCATCCTGTTC-TACCTCACAACTCaaaaaagaaacaaagaaaaaaaaaaaaagaaagaaaaagaagaaagaaaTCTCTCTTGAATTCCAAAGTGTTTGTGGTGATT-AGCCAATCACAGAGCTATTACTGTCAGTGAAGATGAGGAGCAGTAAATG---CTATTTTAATGTTAGGTGTGACTGTGAAGGAGAATGACAATG--GAATATGTAGGACCCTG---GTTTCTCTACACCC---TTTCTC--TTCCAGCCTCCTGA-----AAATTCTTTAAGAGAGAAACACTAGCAGCCATTCACATGGGA-TCCTGCTT
s HiC_scaffold_1 144054392 1621 + 233722169 AAGAAAGCCAACAGAATGATGATCTCTGGCCA-CACGGTGT-----GTTTTGTGTGCAGTTTTAAAGTCCGCTAAGAATTTCTGTTAAA------------ATCCAAAGCTATCCAAGTCCTCAGCAT----GGTCACCTAACCTA-CTCTAGAAACTTAAAGTTTTGCCAGATAAACTGAATGTGACTTTGGATGCA-GTTTCCTTCATTAACTCACTAAACGGTAGGGAAAGCagtaaaaaagaagtagaaatgatGTTTAACTTGAAATGTCTGAATTTAAGGACCAGCAATAAAGCTCCaaggcacagcgcctgcctggcaagcatgaggtcttgaggtttgatttctggtacaaaagaaaaatctgaatctAAATTCCCATTCTTCCATAATTAGCATTCGTATCTTTCACAAAAAATT----CAATATTATTGATAACATTCAGTTCGCTTATTTGCAAAATGAGAATCATCACACCCAACTTTGAGGAT----------CACTGGCATTTAACATATATG-CTGTTTTCAG-----CaagttttcctgtttttgttttgttttgttttgttttgtttttttacaaagATTCATTCTGAAGTCTTTCCGTTTGTGAGTGTTCACATTGCTACTGCAGTTGGGTATTTTGCCTGCTCATACATTGGGTTCTAATTCTGTCAAAGGTCGAAATGACATCTTATTTAAAGATTATCAGGGGAAACTGACATGTGTTCTAGTCTCTGataatcattaaatatttgttaaatgaatgagaaATGTTATTGAATATTGCTTGGCAGACTTTTAATGTTTGAAATTGTGcggctacttt---taaaa---attagtgacgaaggaaagacctttttaaaataagatgtagTGTCCTACTCCATctgttgattttagttt-aatttcttgggttctttttcttttcctgtaagcTCTAATCATTTGATAGACTCCACTGAATCTGTCAGATATTTAAGTAAATCTCTATTATTTATTCAGTCTTTGCATAGC---AATTGATGACTTTGATTAAACATGTTTAATATTTCTGATATAATATTTGCTATCTTT-TGTGGCTAATAAATCTTTCAAACGCCTCCTCAATATTAATATATCAGTTTAGGCTTCATAACGTGTGTGAAGTCTAATTTATTTTCCAAGTCTGGCCAAGAGAGACTTACATTTGGAACTAACAAGATAAATGGAAGTACACAGATTTGTGTAAAgtggaacaaaataaatattcaggtGACATGTAAAATCATATAAAACCTCTTTCCAGTTAAAACTCACAGTGCATTACTAT-TTAAACTGTAGGTACTTGGGTGGGGTGTCAATTTGGATTATAAAATTAACTGACTGGTGTCAGGCACTGTGATTGTCTTGTTCTTACTTC------------------------------AAATAGGAATAGCAAGACAGAGGAAAGTTTGCTTAG-----AAGAGGTTTGTAGAGGTTAAGTGAACAACAGATCGATCACATTGATGGAACACAAGAAGCACTAAAAGGCTATATTTTAGTTCAGAGTGTATCTCTGAAAACG-----CAGTGTTGAATCTGCAGGGCCATGCCAGTTATACCACACCCCAGTTTGCCGGTCCTAGTTGCCTGATTGTGAAATGCTTTTTG-GAGGAAAACCACCCACCATCTGCAGGGGACCCCTGCTT

a score=29685
s chr3           156886390 1609 + 160039680 TGTGAAGTGTGTGCCCCCATGGCCAAGTGTTGT----ATTCAACTTCATCCTGGTGTCAACTCCTTTATGAAGCAGAGATAGAG--GATGGATAACAGCATGG---AGCTCCCAATAAAAGTAACAATTCACAAGGGAATGAGGCATTTCTGGACTGGGCTA-----CGTGTCAGCCAT-GGCT--TTTAGAGTACTGCCTTTTGATGGCTCCAGCCCCCTCTATGGGGACAGACACTCACATCTCTTCTGGTGAAGACAACGCT---CTTGCCAGATCCCATATGGGAAGAGATGGGGAGCTAACACCATAGTGTTAGCATTTGGAACTTTGAGGAACATGTCTATTGCACTAAGTTCATATCACTTTTTCAGACTCAGTTTT---CCTTGTGGCAGCCACATTATCTTTCCCTTCA-AGTTGTAGTGATCCTTAATATCATAAAGCAAG--CAACTGTATTTTGGAAAGAAGACTAAAAATATTAAATATTGCTTTCCACTGGGTAGAATTGGCATGTCAGAGTTATTAATAGTGATGCCCTACAGGGTT------ATAAT--GCAATTTTTGATTAACAATATAAATTAATTTCATTAAACAGTATCTACTGGAGACCCAGTTATTAATAATAATAAAAAAGCCAAGTTCCATCTCCTTGGTTTTGTATATGCTGATGGGTACAATTGCTCCCCTCAGCAA-AGC--CACAATTGCTTTTGTTCCCTGAGGCACAGCTCCAGAGTGGATTTCATTTTGGCTAGATAAAAGATACACTAAAGGACTGTAATAAAATATACAGCAGAGCGATGACATGGAGTGATCGCTGTGTGCTCTCAT-TCCCGTGCAGATAGGAACAGCAAAGTAATAAATCAATTTTTATTAAATGAAAGAATGAGGCTCACACAACTTATAAGTGCAGAAATCAGCTT-TGTGGACTAACATTAAAGTTAATAAATAATATCATGCATATTACACATATCCCTGACTGATAGAAAGAAAATGAATGCTGTGcatacacacacatacacacacac-----------------------------acacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatgcatatataCAGGCACACAGAGAGACAGGGGAGGTCATTGTGTCTGAGCGAAGTGGTATGAATATAAATGCACAGATAGACACACAGAGAAAATTAGGAAT-TAAAAGATTACATATGTCAATATACTTGGAGATTATGTACACAACACATT-------TTGAGATATGCGTCTGT--ATACTAAAAATAATGTACATATTAAATGCAAATGGATTTGAACACTCCGAAATCTATAGCTAATGATTGCTACCAATGAATTAAGT-CTTC-CTGATAGCATGGGATTCTGAAATATTCCTATAGGAAAGGCTGAAGTCATACCAGTA--ACCTGGCTTACTTAAAAGTATAACAATATCAGACATATTAAA-----TGATTGAACTGCCATTGGTGAAGGGCACTCTTCTGTTGAGTTTAGTTAATATGTTACAGTGCGAAGTGTATAGAATTAGTGTCAGAAATAAAGTCTCTTTTATAATTTTCACACAAAAGCAT---GTGAAATTTATTTCTTATTTATTAAGCATACTGATGGCATAAACAGACA
s HiC_scaffold_1 144059412 1611 + 233722169 TGTGAACCATGTGTCTCTGCAGTAAAAT--TGTCAAAGGACACCTTCAATCATGCTTTGACTACTTTCTGAATACCAGATTGAGTAGGTGGACAGCAA-ATGGGTAAAATTCTAATAAATATGACAGTTCATTGGGGAGT------CTTCTTGAAAAAACAAGTGATTCTGTAAGCAATTGGCTAACACAAACTAGTTTATATCTGTGGC--CAGTCACATTTAATAGTAtagactttcatttttcttctcaaggACAAACTGCTAGTCTTGCAAAATTGCATACTGGAAGTGACACACAGATAAACTTTGACTGACAGTGCTCA-AACTTTAAGGAACATTGCCACCGTGTTA-GTTTGTGTTACTGTATCAG-----GTTTTGGGCCTCTACACAATTTCATTGTCTTGCATTGAAGAGCAATAGTGAT------------AAAGGAAAGTTGAATGTTTTTTGGAAATCATAATATAAGTATCAT-TAATTCTGTCAGTTGTGTAAACTTGACACAC-----------ATAATAGTATactattgattttatttcataatttacaacttttgattaa-aatataaattaattttatgtagTGGTATCTATTGGA-ATCAAACCATTAATAAACATGCCCAAGCCC--TTCCACTTTCCCA---TTGTGTATGCTGATAGATAACATGGCTCTTTTTAACAATAGCATCACAATTGCTTTTGTTCCCTGAGGCACTGTTTCATA-CAGATTTCATTTTGGCTAGATAAAACATACTGTAAAGTATTTTAATAAACCGTATAAAAGAATGATGACATGGAGTCCTCTAAGT------TCATATAccatacagagagaaaaaagcaaataatgaatcaattattattaaattaatgaataaaactcATACAAATCAGAAGTCCAGAAATCTGTTTCTGTTTGTTAACTTTAAAGTCAATAAATAATGGCATGTTCAGCTTACATTTGCCTCATTcatgaaaacaaaactaatacTATAGGTATATATTCAAATATAGAGACAGAAGATGAGAGAAAGTTACAtgattaagatatatatatatatatatatacagatagatagatagatagatagatatagatatagatatagatatagatatagatatagatatagatatagatatagatatagatataga-------tatatctatGCA----GGTAT--ATATAGAGGAAGTCATAATTCCAGAGATATAGTCACGCATGTCtaaacatatatgtgtgtgtgtgtttag-----atgTACAAGGACCATTGGTTTAATAAGCACAAGTGTATGTAGATactaacaataaataaatcatgTAGTTTGAATATATCTTAATGCACCAAAATCCATAGATGATCATGCTCGTCATGTGATTAAGTGCTTCACTGTGGTCCTGGACTTCCAGGACATCTCT-------AGATTGAAATAACACTGATATCATTTGACTGATTTAAAG--CTAAAAATATCTGACAAATTCAAATTCTTCGTTGAAGTTCTATTatcatataaaattcttttgtcAAGTTTGGTTAATATTTCA-----GGAAGTACAGAGAAACAGCATGGAAAACAAAGTTCTGCCTATAATTTTGCTGAGAGAACATTAAATAgagtttatattttgtttgataaacATACTATTAAAGTGAACAGACA

a score=46257
s chr3           156890520 2852 + 160039680 AGATCTTCTTTCTTGCTTTACAGAGGC-CTTCTTTCCAATGTGTCTTTCCTAGTACAATATTTAATTAACATTGTTAAATAAAACCTCATTTTGTATGGAATAATTCTGTGCATGTTTAAAGACAAGTTAAGCAAAGAAATATG-CCTTCTGTCTCTAGCATCTGTAATTGAGTGGACAGCTTAAATCTTATGTTTCCTCTTAAAAGTTATTAAAACATGCAAACATTCTTCTCCTCCATTAATTGGAGGCCTGCCCTCATTTTCCAGCA-CATAGTCAGCTACCCTGCAAGTTAAATAACTCTAATTATTAAGATTCAAAACATTACATGTATCAGTGAATACAATTAAGATGATTTGAATATTATTAAATGAAAATGAACTATTTCTGTCTCAAAAAACTAAATAAATATGCTTAGGGATTTTTACACTGTGAAATTGCCTCAACAAATAATTGGACAATTCAATATAATGAAATGAGTAAAATAAATAGTTTTAATTCATAATAACAATAAGTAATGGAATTATTTATGTAGCTTTGATAAAGAGTAGATTGTA---------CAAATACCAAATAG--TCTAATGGGAAAAACAAAGATTATTATGCTTTTAAACTTCTACTTCGTGGGTTGTGATACTGTACTGTGGTACAGTTGGCTCAGTTCCACTTTGGCATCCATGTCTGAGCA---CTAATCC---CCCGTGTGTCATGTTAGGAAATCCCCATGTATCAAACCAAACAAGCCATATCACAGCCTCCTTAAGCAGGATTTCACACACCGGGGGTCACTGTACTATCCATTTGTAGGAGAAGAAGTGGAAACTCCAAGTAGCCAGTGCTCA--------GACTTGGGGTTTACTCATTGTGTGCACTTCGGGTGCTTTCTTCCCCTGGTCTTGTTT------GGGCCACAAACACTCCCCTCAGTGCTTCATCTGAAGGATGAAGAAAAATGCAGACTAGAG-GTAATTGTCAGCCACTGAGGGGCAACTTAGGCAGTGTCCTTGATCATTTGGACATTTAGTGAAATGATTCATCACTGATAATTATAGGGTCAATATTCCATGAAAAGATATTTTCCGCTTAAACTAGATTGTGTCCTTTATAACCAAGAATAACCTGGACACAGGAAAAAAAAAAAAAAACACTCATTCCCACAA---------AAAAAC---------------AAAACCATTTTCAGAAATGAAACCAGATCACATCTAATTAGAAT-ATAAATGTTGCCTTTAATTTGGGTAAATCAGCATCTTTGCAGATGCTAAGATCTAAAGTACATTTCTGTTATTCTTT-------------CAGGAGCTAAAGCCTACATCTCATGTGTGCTGACAGTACTCATTTCAGTGGGTCTCCTAGGCTATTTTCACAGTACC---ACAGTCATGGAATCTTTAAGCACAAAACTCTGACCT-TAGGTTCCTAGTCTTCCTGACTTGGCTTAGTATCCAAGAATTTCTCAGAGCTGCTCC--ATCTACAGACCTATCCACAGACTTGCTTGTACCTTGCCTGCCTAAGCCC----TCCTTAAATTGAAATACATTGTCTCACTCAAGCTTGGAATCCAGGTTATGTCCAGTCCATCTAGGGTTTGCATACTGTATTCATCTATCTATTCCCCTCTCTCTCATCTATCCTTCAATTTATCTATCATAGTC----ATCTGTGTACCGCTTACAGCTG---TCTCCATATCATGCTTCATAATATGTCTGTTACCTGTCTTCCATCTGTATAGGTCATTTATACACCAGTA-AAAATATCTTAGCAGTTAACACTGTTATCAGGTATCAGTATGGAAAACAAATATTTGATGTAGCAGGTTTTTTTTTTTTTTTTTGAAAGTTACAGAATATCCTCCCCAAGGGACTATGGGTCATCAGCATCTATGTGTATTCTGGACAGGTAGTGAGGACCTTGCTATTTTCAT-TGTAGTGAAAATATATATATATAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACATTTCTCACTATAGTGAAACTTTAAGTCTCAATTATTATAAGAAATATTTCCAATGTTCAAAAACTTACTAGAATATAAAGACTTCTAATTTTACAAAACTAGCCTGGCATTTTTTTTCTTTAAGGAAAGTCTA-GGATTTTGATAACTTGAAACATTTTTATGAGGTGATCTTAGCTGAGATAAACTGGGTAAAAATGTGTCAAGAAATGAAAAATTTAAAAATACTCATCTTACCACTGAGGGGGAATTTATTAACTTCCTTGA-AAATGAGAATTGTGAACAAACCAAAATGATTGCCTGACTTCAAAGTGAGTGACTTGTCACTCAG----------GGTCAGGAGACC-----TTAGTGAG-----------AGTCCTCCCATAGAAGTCAGAACTGCATCTTCAGAACTTATATACCAGTTCATT--GAAAAGACCAGCCCTGATCCTGTGCTGTCCATTGACTTCCTA------TTGGTACCATAAGTTTAAAAATCTTAATCTGGAAATTTTTTCACCTGGATTTGTGAGTGAATTATGTCTAACTCTCTA---------AATTTCTATATTAATTAATTTTTTAGGAAATTCAGTACTGTTAA-----AATTTGT---TCGATTAAATTT--------------------------------------------------------------------------------------------------------------AGGGTTAAATACG--ATAAATATTCCCTCAAATTATATAGGAAATTAGGATGAAAAGTTTGA--CAAATTTT----------CAAGTAAAAAGGCAAA----------CAAATCCTCTGGTTTTCATGGATTTTGTATGCCTTTGCCTGTAGCCACCTTTGATTATGTTACTACAGGCTTCACACTGGGCAGTACAGTCATTCTGTGTTTTAAAGTCTGAATCAATCTCATTAAAGCTGTAGGGTTAATATGCTCTTATCTCTGCTTCAGATAAACTTCAAATGCAAATTTATTAAGATTTATTAGAAGACTACCTCTCAAACTAG
s HiC_scaffold_1 144062890 2771 + 233722169 AGGTTTTGTTTCTTGCTT--CTGAGCCTCTTCCCTTCCATGTGTCTTGTCCAGCATAATA----ATTAATATCAATTAATAAACTtacattttagaaagaataa--cTGTACATACTGATAGATGAGTTAAGCAAACAAATGTGATTTTCCATCCTTAGCATCTATAATTATGGGCACAGCCTAACTCTTATTATTCCTcttaaaagttattaaaacatGCAAACATTCTTTTCCTACATTAATTGGAGGCCTGCCCTCATTTTCCGGTAACATAGCTGGCTACCTTGCAAGTTAAATAACTCTAATTATTAAGATTCAAAACATTACATGTATCAGTGAAGGCAATTAAAGTGATTTGaatattattaaatgaaaatgaactaTTTCTGTTTC-AAAAACTAAGTAAATATGCTCAAGGA-TTTTATATTGTTAAATTGCCTCA--CAGTAATTGGacaattcaatgaaataaagtgaatacaataaataattttaattcctaaTAGCATCATGTAATGTGTTTATTTGCATTACTTGGATAAAGAATGCTTTGGAATGCTTCAGTAAATACTAAGCAGACCCAAAAGGGGTAAGTATAGCTTGTTATACCTTTAAACTTCCAGTTCATGAGTTATAGCTCTTTACTATGATTGAACTGGCCCGCCACCACTGTAGTATCC--TTCTAAGTGTTCCTAACCCCTGCCTATTTACCATGTGAGGGAATCCCCTTATATGAGAGCAAAGAAACTTCTTAGGACCTTCCTAAAGCAGGATTTCCCCCAGTGGTG--CACTGTATCATGTGGCTCTGAGTAGAGAAATGAAA--CCCTGGTGCTCTGTGCTCAGTATATCGGATGAGGGTGTTATTAGTTGTGTAGACCTCAAATGTATTCCTTTGCTAGCCGTGCTTTCTCTGTGCCCCTTAACAATGGTCCCAGATACTCAATGGAATGG-AAAGAGAGCTTCAGACTGGAGAGTCAACAGTAGCCA--GAGAGGCCCCTCAAACAGTCCTACTGACCTTTTGGacatttagctcaatggctcatATTTGATGAATTTTGGATt-atatcaaaaggaaa-atatggaaaattttacCTAAACTGTGC------------AGAGAAA--TGGTTTCCAATCAAAACGCAGCAGACAGTCCCTACCATGACCTTGTGttaaagatattttgaaattaataaaaaatgtttctacAAATGAATTTACCTCATATTTAATGAGAGGAACAAGTTTTGCTTGTAATTTGGGTACA--------TTTGAATACATTGAAAACTGAAATGtatttatgtaactttttaaCTGTTTCAAGCAAGGGGTCAGGGCCCTTA--------GTGCATATCAAAtttcttcc--tcagtctcccttTCATTTGTGACAATACCCCTACTGCAAGGAGCTGCTCAAATTTAACACTCTAACTTCCATGATC--AACTTTCTTGTTCTTGTCTACTAGTCTCTAACTTCTGCTAGTTGATCCTGTTCTAATGTCTGCCCCATAGGCTTCCTTG--CTCTAACTGTCCTTGTTCATCATCCATAACTCAAAATTCACAGGCTC-------------------------------CCATCC--------------------------------------------TTCACCCTCCACTTTCCCAGTCTCAGCCTGAGATCTG-----------CAGCTGGGATTCTTGTATC---------------------------------TCTGTGGAGGCTGTTCAGAAACCAAAGTCAAGTACCTTGGT--TTAGCATT-TTAGCGGATGTTA-tatggaagaaaaa-----gataaaaaaggatac--------------AATATTACAG----TTTTCTTCAAGAAGCTG-----CATCAG---------------TAGAC--------------------TTCTCATctgcag----aatatatatatata--------------------------tatatatatatatatatatatatatatatttcacacaaGCA-GAACTTTTGAATCTCAGTTTTTGCAAGTACTGTTTTAAA-GTTCAAAAGTT----------------------ACTTTACA--------CTTATGCTTTTCTCATTT-AGAAAAGCCTATAGGTTTTGATGACTGTAAACA-CTTTATGAAATAATCCATTCTTAGAT-ATTAAGATCAGCATGCATTAAGAAAGGAAACA-TTAAAAGTCACAGCCATAACCCTGAGAAAGAATTTATTAGCCTCCTTGATGACTAAAAACTTTAAATACCCCCAGA-------CTGACT------TGGATAA--TGTCActtagtgttttctttgtttacaAGTCCCATAGTTAGTGAGTTATTGGGTATAATCCACTAACAAAGAtgata-------tttaagaatttaaaattcatttctttccaaAAATACCATCCC------------ATCGATTGACTTATTGAAAGACCCAATATTGTTAgcttaaaatttataaactggGAGGTCTTTTTCT--AACTAATGAAT--ATTTTGTCTAATTCTTTGGAAGTCAATAATGTTCAAATTACTTACATTTCCGTATAACTCAGAGTTGTCCAATGTGAATGTATGGGTAGATTAAATTCtagctggggatctagctcagtggcacagcacctgcctggcaagtacaaggaccggagttcatttcctggtaccaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagcattaaATTCTGCAAAAACATTCTTCAACAATTTACAGAAATTTAGTATCA-----TTGAGGCAActtatgaacagaaaaaaaaaaaaaaagcaaagtggacaaacaaaaaccttaaatttttatgtattctatgtttttgttgctGAATCATGGTGTTTTTTTGTCATTCAGGAGCGCCCACTAGGCAGTA----CACTGTATGTTTTATTGTATGACTTAGTATCTCTAAAATCATCAGCCTAATAtgcttttttgttcattttatagaaaagtaaagtacaaattta-catgCATTGTTTGACAA-TACTTCTCAAAGTAG

a score=114395
s chr3           156894334 6097 + 160039680 [encoded data, 6664 characters]
s HiC_scaffold_1 144069817 6221 + 233722169 [encoded data, 6664 characters]

a score=74400
s chr3           156903687 5178 + 160039680 [encoded data, 5757 characters]
s HiC_scaffold_1 144080424 5504 + 233722169 [encoded data, 5757 characters]

a score=23293
s chr3           156915816 589 + 160039680 TTTCTTTCTTTTCATGAAATAGTCAAATATTTTT-TCCTCTCTGTTTCCCTCAATCAG---CCCGTCTAGACACT--GTTTTGTTTCTCAGAT---------CCTGGAACAGAAAGCCATCTACGGCTGGAACAATGTATAAATAATAAATAGTGATTCCTGTGTCCTTCAGGGGGAGGCTGAAAACTTTTATATTTTAATTGAGTTCTTCTGTTTGTGCTTTTGATGTTTTATTTAT--TGGGCTTTCTAGGAGGGACTTTTCTCTTTATGGTTGCCATTCTTGCTCAG-------ACTTGAGATAGCTCCAGCCCTATGCTGCCCTTGCTTTGAGATTTTTCTTTAATTTCTGTCAAATGTTGGAGCTGTGGAGGCTGGAGGGCAC-TAGGTTAATAAATTAAGG-TATGAAAAATGCCACCTGCCACTTTTTTTTTTCTTTTTTGCCTGTAATACAACATTCATCAATGGTTTGGGATAGGGAAATCACTTCAGTCACAGGTTCTATGCAGAAAATACTTATTTCCATGTTTTCCACTGATGGCCTACTGATTTCAAGTTGCCATCAAACTATCCTGAAAGACATGAGATT-TACACATAGTATCTGAAGTCA
s HiC_scaffold_1 144090918 597 + 233722169 TTTCCTTCTTCTGGAGGACT--CCATGCATTCTTGTTCTCAGTGTGTTTCTAAATCAGAAGCCCTACAGgactctctgttttgtttc-catatGATATTCAACCTGGCAGATAGTGCCATGTGCACCTCGAGCActgtataaataataaataataatatttatgtcCTTCAGGGAAAGACTGAAAACTTTTCTACTTTAATTGAGTTCTTCTGTTTGtgcttttgatgttttatttattgtgtgCTTTGTTGGAAGgatttttctgtttattgttgTGATCCTTGTTCTATTTCAGCACTGGAAATAGCTCCTGTCTTGTGTTGcccttttctttgaaattttgtttaatttctgtcAGATGAAGGTGCTTTGGAGGCTGGAGGGCACTTGGGTCAATAAATTAAGGATATAAAAAATACCATCTGCCA-----------CTTTTTCACCTCTCATACCACATTCATCAATGTATCAGGA----AAAATTACTTTAGTCACAATTCCCTCACaaccaa-atttattttcttgtttttctctcatgACCTTATAATTTTTAGGTGTAATCAGATTGTGGTGAAAGCTAGTAAATTATACACGTTATTCCTAAGGTTA

a score=10024
s chr3           156919354 566 + 160039680 TCACAGATAGTCACCATCATGCAAATCCAAAACACAAGTAG----GCCACAGAGA---GACTTCTTAGCTTTTACCGTTCAGCAA-----CTATGATTCCCTCAATGACTTCTCCTCACTCTGATTCCA-------GGCTCACTCCACTACTTTACTGAGGCC-TGCACATGTTCATTTCTCTACAGA-AATCTCCATCCTTTTCCTGTCCATATGTTCACAATTCTGTCCCCAG------AGTGCTTTGCCCCTGGGAAGATTGTTTATCCTTTCTAGGGAAGGGCTTTTGCTTTCCATCTGCACATGGAAGAC--AGGTCTAATTAAAGTCCCTGTAGATTTTTCACCCTCAACATGCTTTCTTGCTGTGATTCTGCACAATCTGTCTTGAGGACCACACTGCTCTTTTCAAT-CTCACATGTCCCCAAAACCCAGCTTCATAG-TTGGTCTCAGT-ATGCTATATCATGGCCACTATATTTA------GTG-AAATATAAACTCTAGTATAATTATTACTCAAATACTCCTTTTATTAACTGCTAAATTCAATAAGTTGTTGCGATG-----TGCAACAACTTTAGTACCTCCAGTAATAATTTTTT
s HiC_scaffold_1 144094441 588 + 233722169 TCACAGATAGTAAACGTCTCCCTACTGTAAGGTAAAATTAACTTagttaaagaaaaatgactttttagCTGTTAATATTTAGCAAACTAGCAATTGTTTC-TCAATGGCCTTTTCTCACTTTGGGTCTCATTGGATGTCTGCTTctactgttttaatttgattaTGCAGACTTGCTCTGCTATAAAAACAATCTCCAATTTCTCCATGCCCATATGTTCACCA----GTCCCAAGCACAGCAATGCTTTATTACTTGGGAGATTGCTTATCCTTTCTGGGAAGGGGCTCAGGGTTTTCATCTGTATATAAAAGACAGAGATATAATTAAAATCTCAAAAGACTTTTCTGCTCTAAAATGTTACCCTCTCATATTTCCAC---------TGTGGGATTGAAGCTTCTCTTTTTACTAAGCATGCATTCAAGAAATCCAAATTCATGGTTTTGTACCACTGATGTAAGGTAACATTTACTATCTTTGTACtttgtgaaaatataaaatcaaatccAATGACTTTTAAAACATCGCTTTTATTACACACAAGGGTTAAGGTGTCATTCTAATGAAGCACACAGCAGATTTA--------AATCATAATTTTCT

a score=8231
s chr3           156920589 358 + 160039680 CCCATTAAGGGATCGTTCTTTTGAGAAATGAATCTCTCACACCATCTACAAGT-----AAGTGCATTTCTACAGATTTTGGATTTTCTTGTCTTA--CCTGTAAGAACAACAGGGATGCGCAGTACAGCGGCTAAACTGAACTTGGAAATAAAACCCTCAGTCATGATCACACAATAGGCAGAATCTGCAAACAGACTGTTGGCACCTTGTCTTCCTTTGTTAATCATTGTGAGCGTGGCAGATGGCCCTTGGCTATGATCCAGGGGAAGCCAGTG-AAGGTTGTGGGGATGAGTTCT----GTCTAATATCCTCATTT-GGCATGTG-TCTGCTGTGTTGATATTTAGATGGACAAATGAAAAgtgtcgtg
s HiC_scaffold_1 144095362 363 + 233722169 CCCCTTCAGGGAGAGTTCTTTAGGGAGAAGCATTTCGGCCGTGTCCTACAGACCTCACGATTGCATATTCAC------TGGACTTTCTTGGTGGAACCCTGTAAGGACAACAGTATCACGTGTGACTTGGGCTGG-TAGAATTTGGAAGGGAA--CCTCAGCCTTATTTGCAGAGCAATAAAGATCTAGCAACAGGCTGTTGGCAGCGCTCCTTCTTTTATTAACCATCCTGAGAGTGGCAGATGGTCcttgcttattttcccagggaaGTGAGAGTGAGGGTGTGAGGAGAGGCTGTCCTCTTCTCGTGTCCTCATTCAGGAATGGGAGCTGTCACCTGGGCATTTAGATGGGGAAATGGGAGACTTTATG

a score=16248
s chr3           156922187 912 + 160039680 AGCTCAGTTCATTTAGGTTCTTTCCTTT---TCTTCAGTTATTACTGAGAATTTCAGCAACTTGAAGCATACATCTCCATCACTACCATGAATTAGCAGGGT----ATCACTATAATAATTTTTCCTTTCAAACCTACAACCTTTGGGTTTCTCATGATGGGTTCACAGATGGGCTACACAAACAGTTGACTCTGTAGGCAGCCT---ATCTTGTATAGAAGAT-TCATAGCTTTTAATGTTTACTATCAAGGATTACTGGAAACTTCATTTTGAGCATCAGGACCATGAATTTCAGAAAAAAAAAAACTGTTTTAAAATAAAATGAAA-AGGGAGAGTATGGTCTTCTAT---CTT-------GAGAAAATGAAGGAGATCTCACCTGT-GCTCTCCAGACTTCGACTCTGAGTGATCTGCCAGCCATC------AGTTGTGTTTGTACTGCCACA---TGGCAATTGAG-AGGTTGCTTCAGTCATACACTGGGGA-AATGC-TTAGAAAGCATT----CCAGCATTCCAAGAATGTGGAAACCAAGA-GCAACTCTTGG--TTGTAGAGAGCTGTGaaaacaaaacaaaacaaaacaaaaacaaaaacgaaaacaaaacTGTCAAACTTGGTGCCTTAGAATACAACTCAGGAGAAAG--ATTCTGGTAAAACTTGCCTGTTTTCCAAGAAAGAAGGAAGAA-GGCTTCACCCACAAAGCCT--AGTAACCCATCAATTAGTTTCTCTAGAAATTACAGGGTGGTGGAGAGCTTTATAAATATTTGAGACACACGGAGGATATATACTCTGTGAAAACTAAGCTTCACAGAGATGGTATGTCATTACCAAAAGATAAACAGATAAACAGTCATCCCATGTATCCCTATACAGCTCTATAAATTATACATTTTTTTCAAAAAGTTTATCTGATGAACCCAAGGGAATCTGTGGATCA
s HiC_scaffold_1 144097249 882 + 233722169 AGCTGAATTCCTttggacttttttctttctttcttcaactGCCATTGAGAAATTTGGCCATCTCAAACAGGCTCTTCTGTCACTAGCAGGCATCAGCCAGGTTCCAGTCAC-------ACTTCTCCATTGGAATCCATGAAGTTCAGGTTGTACTTGATGAGCTCCGAGATGG-CTCCACAAACATGCTGCTCTCCAGGCTGCATTTCATCTCATGTCAAAGCCATCACAGCTTTTAAAACTCACCTACAAGAG---CTGGAAGCTGCATCCCGATCAAGAGAGCCCTGagttttagaaatgt-----ttacttcaaaagaagacaaagtaGGAAGATCATATTCCTCCGTGAGCTTCGGGTGAGTGAGAGAGAAGGAGGTCTCAATGGGAGCTCTCTGGGCTGTTGATGTGCGAGGGCGGGCAGCTACTGTTCAAAGATGTGTTTGTGCTGCTGCAGAGTGACCACTGAGGATCCCACTTCAATAGAACCTGAGGGAGAATGCGTTAGAAGAAATGGAAATCAGGATAAAAAGAGAGTGGAAGCCAAATTACAACACTTGGCATTACAGAGGGAGGGAAAAGCAGAGC--------------------------------CTGCAAAATTTGCTGCCCTGGAGAATACCCTGAGGAAAGGGAAATCATGCAAAATCCTTCAGCTTTGCAAGAAGGAAAGCAGAAAGGCTTTCTACAGCCAGCTTTAAAAACCTCATCAGTCAGATCCTCTAGAAATTATAAGGTGGTGCAGAATTTTTTAAGTATTGGAG-CTCGAGGGTGACTTGTAGTTTGCTGAAGCTGAACTGGACAGAATTAATGTATCAT---------------AATTAAGTAATTTTACCGTATATTCTTACATGGCTTTACAATTGAT-------------AAAGCTTCTTTAATGAGACCAAGGCAGCTTGCAAGTCA

a score=39917
s chr3           156924766 2068 + 160039680 TTTTTTTCCTATGGTGGCATGAGTATTACCTGTGTCCTCTAAAACACTTAGAGGACCTTAACAGAAAAGTATAATGCTAATTTAAGAGAGCATTATTAATTTCAAGACT--GTTAAAAATGAATAATTCAGAGCTGTGGGTACTGTACCATAAAGATGATT-GGTATAATCAAAATCACAACCTTATTGTTCTTAACACATTCAGGTCCCCAGCATTAAGCATCTTTTCAATTAATTTTTCAGCATTTTTCAAATGTCAATACACATATCTTAAAAGAGGCTTTTTATTTTTTTCCTTTGGAGGTTAAATGGTTGTGGCGGCTTCCTCCAGAGTGGAGTTGGCTATTTCTGCTTCATAAATCAA-CTGCTTTTCTTCTAGGACCAAAGGAGTCCCCAGATTCATTTATTTCATTTTTAAAAAGAACAAAACCAAAAATATTATTGAGTGTCTTCCAAG-TAGTTTCACCCATGGATGAAAAATGAAGTTCCATCAAAGGCTGCCAGGGAAAGCCAGATATTATCCAAATGTTGTTTCTCAGCAATTGTGTATCGATTGAGTAAC--TTGGTCTGCTTTCTGATGGCTGCAACTCACTAGGAGGAACTTGGCAAGTCTCGGATTTG-------------------------------------------CACAGAGGAAAATATACTACACCCAAGTCACATCTTTCGATAGGGAATTAATGCAAGGAAATCCGCTTCTAGAATTTGTGTGTGTTTAAGTTTGCGTTCACTTGGGAGAATTTAAAGGTAAGTGTACAGGATCTCGGGTCAAAGCTCCAGAACTGTGGGATCTGGAATTCATAAAGGAGTCCCTTACTGCTCTGCAACAAATGTTGAAGCTTAGTGCCAGTAAACACAGTCTATGGCAACTCCTACATGGATATTTAATAATATAATTACCCCAgagcctgatagtttatgtctataaaccattcagaggctgctgcaggaggattctcccaggacaaaggctat-------cttaggctgca--tcatgagttctgggttatcctagaatacagagtgagtacacaactcaaagaaaTTTAACTCTTAAAATTTCCTGACTGACTAAATTATATATGTTATTGAGTTTCATG-TATATTTAATCTCTCCTAAATAGCAAATGATAGGTAGAAATATAGAGCTTGTGTGCTGTGTATGCTTTTATTTAGTTTAATAAAT---------TATAATTCATCTGGAGTAAGATGAATTTATCCTAGGCATTATTATCAATTTTGATAATATAAAGAATAATATAGTCTT----TGAAATACAGAAACTC-CAAGTTAGA-AGTAATTCTAGAACCCACAAGGGAGATGATTAATAATCAAGAAGTTCACACACTAAATG------TAGAAATAAG-GCACAGTGAGACTGCCCACACATGTTATACTAATAg--ttaaggaaactttcataagagaagcag-gacctgtgacatattttaatgggtgggtaggagttctccaggctaac-aaggatgggccaaagcagaatgaacagaaggtttaac--tgcaaaggtccAAGGATAGACCAGCTTTCCA-AGAAAGCATTC-CAGGGATCATCATATCCTCC----------------------------TCTCAACAGCTC-------CAGATCTGACACAGTTGCTG-----AGGGATCAGT--CCACCAG-TTCAGCTCCTGCTTAGCCA---TCTCCGCACACGTGACTACTACTC------------------CTGCATTCACGCAGCACAC---TGCAATGCTAGCATCTAGCTTATCAAGGATT--------CATG-------TCCA---GAGATGAAAGGAGCCTTTGGTAGTTTTCGTAAAGAAA------TTCCCTTTAACAAACC---TATTTGTTTTCTTCTACAAAGTCATGAG-CCTTTATGGATCTGGCTGGTTTG-----------------GCACATTCAGAAACAC-AAGGAATGAACTGAAGAGAACCAAGAGAGTGATGGCCA---------TCCGTCTTCTATGAAGCATATGCCTATTATTTG-----TTTAAGCCACTCCAAGTGAATTAAGTGTTTGGGGTGTTACATGCCTTCTAGAACATTCAAGACAG------AATCTGGATGGAGTACATCCCATTACAGTGGACATGAAATCTCAACATCG--CTGTGTCTCTAGATGTGTTCTACACAAAGCTTGTGATTCTCGAAGTTATCATTCAGCAAAGTCA
s HiC_scaffold_1 144099595 2144 + 233722169 tttttctttcatggtGACATAAATATTACCTGTGTCCTCTAATATTCTCTGAGTACCTTGA---AAAAGTGTAATGCAAATTTAAGGGAG---TGCTAATTTTAAGACTCTGTTAAGAATTCATAATTCAAAACTAGGTTTACTGTACCATGCAGATGATTAGGCATAATCAAAATCATAAGCTTATTGTTCTTAATACATTCTGG-ACTCAGTGTGAagcatctttttaaattaattttcaacaTCTTCCAAATGCCAATATGAATGTCTTATAAAggactttttatattt--cttttagagGTCAAGTGGGTATGGCAGATTCCTCCAGAGTGGAGCTGGGAATTTCTGCATCATAAATTGAGAAATTTTTCTCCTAGGACTGAGGGAATCTtcagattcattt---tcattttgaaagagaaagaaaacattaaca---------GTCTTCCAAAATAACttcacaagtgaaaaaaaaatgaagtttcttCAAGGTCTATCAGGGAAAACCAGAGATTATACAAACATTGTTTGTCAGCAATTGTATATCGATTGAATAAAAGTTGCTTTGCTTTCTAATGACCATACTTCCTTACAAGAAATTTGGCAGGTCAGGGATTTGAGTTTATCAAGAGAAAATGGTTGCAGTTTGACCTGACACACTACACATTGGAAAATA---TACAACTGAGTTCAATTTTTTGAAAGGGACCTTGGGAAAGGAAGGTGATTTATAGAACTTTTAGATGCCTAGCTTAGTATTCATTGGGGTGTATTTAAAGCTAA-TATGGAAGATCCTAAATTTAAGGGTTGCAACTCCTAGGTCAAGAAC-----AAGGTGACCTCAAAGACT------TGTATATTGGACTTTAG-----------GTAGTCTA----GAATGTTTCACAGTTATTTA--GATAT-------------------------TGTTTACAAA--------------------GAACATTGT-CCATTACAAATGCTTTTTTGATACTTAAACTAAATTTCATTGCTTCTGGAT--------AGGTCAGA-TGA---------TTTATGATATTTGA----TCAAatatttttact--ctaaa--atttatttcaaaatgtttgatACTGTATTAGAAATATCCCA-----CAGGCTAtgtgcaagaaaataaaaa-tatgt-caaaatatacTATT-TTTGAATTAGTAAATATCATCACACAAAATGCACTTATTGAAAGTCTACTGCATCCTAAGCACTGTACTACACTTTGGAACTATAAAGATTAGTAAAAGTTTGGCCTGAACTATGAGAGCTCACAGATGAGAGAGTAATTCTAAGGCTCACAGAGAAGGTAATTTAAAGTCAGCAAGTCAGAATGCTAAATGAAGGGATAGAAATAAATGAACGGTA----CCCCCACACAT-TTGTGGGGAGGGGATTAAAGAAATTTTCATAGAGGATGCAATGCCCTGAGACAAGTTTTAATGGATAACTAGAAGTTGGCCAGGTTGACAAAGAATTGGAGAAAGAAGCAAGAAGCAAGTGTGCAAAGGTGGAGATATATAACATTAGGTTAACTCTTCAGAAAAAGCATGCttaataaaattcaaatcctCAAAAGTCCAGAAAACCAGCATCAGTAGTGTCTCAGCTGCTCATCCCCACAGGTTTG-CACTGCCCTTGGCACCGCAGGTTAATAACCACCAGTTTTATCTCAAGCTCAGTGATTTTCTTCGCACATCTCACAACCACTCCATTTTGTTTGGAACTGGCCATGTTTATACAAAACACAAATGTAGCAATGAAAACCATCGAAGCAAGTACTGCCTCAAACATGTAAACATTCCAAACAACATCacagacaacactgagattttttgtaaagaaatttTACTTTCCAGTAACAATCTTTATAGCTGCTTTCTTCTCCTGTGTTATAAACCCTTTTTCAATCTGGCTACTGTGTACAGCAATAAAAACCTGTAAATTCAGATATACGAAAGAATGAACTAAAGAGAAACAAGACA-TTATGTCCACTTAGCTTTTCAATTTTCTCTACTCCGAGTTCCTCATTTTTACCTCTTTTGAGTTTCTCTGAATGGATAAAACAGCTAGTGCGTTACATAGCAACTGGAATTCTCAAGACAGAGGCATAATCTGG-TGGAAT--------TTACCCTGGCGGCATAATTCCAACACCAACATGTATCTTTTAGTAAATTccaaaatgtaattgaaaatatCACAATTTCCCTTCCACAAAGTCA

a score=22865
s chr3           156928136 1082 + 160039680 AGAGTCTGATAAAATGTTACTGAGTGAAATTAACACAATATATG---ACTTAAACATTTTCTGTCTTCCGATATAGGCTATGTACTTTGTCtaaatatagtaaaa-tattaattaaaataaaattCACTTTAAAGAAA---TATCTGCATCTTCAGTTCC--CTCTTACTAATGATAGATGAAAGTTTTAT-----TATAATCCATCAACACTGTTCATTAAGTTATTTAGAAACTTGATTTAGAAATTTAGAAATGTTTTTCTAAAATATTAAGAAGGAAAATAAATAAATAAACTTCATTTGGTCAGGAAATAAACCCAGGCTGATGC-ATGTGGGCGGTAATGTCAG-ATGCAAAACAATCCCCATGGTAACACATTGCATAAAAACATTTTGTTCAAACCAGGATGCCTTGCTGTGCTTTGTAGTTTCCTGCCAAAGC-CTCCTCTGCTGCCATGCAGATGGTCAGC-CTATCTGTTAGGAAGTCTCCCTTCTCCTCAGGAGAAA---AGATCTGCCCTTGCAGAGACCCCAGACATCAG--GCTCATCTCAAGCCCCCAGG-------GACAAACTGAGGATCTGGTTGTTCCTCGGGCCAGGAAC---ACCTCCCAAAACCTGGACTCACAAGTTATTTTAAACTGTATCCT---------AAGCGTTTTTGACATCTCAGTCTGCAGTCTTCAGCATGGGGTTAATTTTAAAGTATACATTACACTGTAAAAGTCCTCAAA--------------TTATTGACGTGAACTTTA--CTTCAGAT-ACTACCAAGATTATACCCTCTAGGTGCCCTCAAGTCAAACTGCCAAAATCTCCAAATGTGTGGCCAAATGTCAAA-CTTTCCCACTTTGCTGA-------CAGAGTGACAGAGTGACGGGGGGGGGGGgagagggagagagaggggggagagagaggagagagagagagaATCATT----ATAAAAGCAAACACATGGG-AGTTAAAAATAAATGTGTTATTTGGCTCTGCTCTGGCATGAATGAGGTAAATAAGTTACATATATGCATCTGCCTGAGAGCTC---CGTAAGAGCTTCTGT-------GTACAGAGTGCTCCAGCTGGGGAGAGTGGGAGTTTGTTTT---GTACAATTAAGAAGTTCTCTGCTAA
s HiC_scaffold_1 144103926 1076 + 233722169 AGAACTCAATAAATTGT-GTTGAATGAAATTAATAAGTTATTTGCAAATTGAAAGATTACTTCATTTCAAATACAAGGAATATGTTATATCTGAATGTTGTAAAAACAttaactaaatataaaatatctttaaagaaaatgtgtCTGAATTTTCTAACCCACCTCTTGCTGGCAGTGTTGGAAAACCTCAGGTCAGTATAACCCATAACAACAGttcattaaattatttagaaatgagaCCCAGGA---------TGTATTTGTGTAATATTAGGAAGGAAAA------------ACTCATTTGGTCAGGAAATCAACTGGGGCTTGTGTTGTGTGGGTGGTAATGTCAACATGCAAAGCAATTCCCCTGGTGACACATTGCATAAAAACATTTTGTTCAAGCCAGAGTACCCTGCTGTGTTGTGTGGTTTCCTGCCAAAACGATCCTTTGCTATCGTGCAGATAGCCAAAGCGATCTGTTAGAAAATCTTCCTTCTCTTCACAAATAGGCCAGCATAGCATTTTCAAGACCCACAGCAAGCAGAAGCTTTCCTTGAACCTTCAGGGATGGAAGACAGGATGGGGCT---GCTGTCACATGGACCAGGGACTGTGCTCTCCCAAACCATGATGTA-AAGTGACTCTAAACTACATCCTTGGCAAGAGAGGAGTTCTCGGC-------TCTGAGTGCTTTAACACCAGGCCTTTTTTTAAGTGTATCT--CACTGAGGAACTTTTCAAAAACCAATGTTTGAGTCTTTGAAGATAACTCTAACACTCAAATGATGAGCAATGCTAT---TTTTAGGTAACTTTTGTTTAAA-TAATAAAGCTTCCTAATGCCTCGTGAGAAGTCAAATCTTACCCACTTTACTGCTCTTTTtcatgtcaaca-------------------------------------------------ataaaaacaaaaacattaaagatAAAATCAAAACCAGAAGCAATCAGAAATAA---TTCCTTATAGGtctgcttcaaaataaatgagataaataaataacatacagACATATAAGTATAAATTCATTAGTAGGAATTTTGATTCATATGGCAGAGGATATGCCAACAGGACTGTGTAGGAGTTTATTTTGCAGTACAATTAAGAAATTCTCTGCTAA

a score=49286
s chr3           156931314 3725 + 160039680 [encoded data, 4249 characters]
s HiC_scaffold_1 144105812 4103 + 233722169 [encoded data, 4249 characters]

a score=43968
s chr3           156936905 1799 + 160039680 ATTAACTATTGCAGGTTTGTTGCTGGTGCCAGCCTAAGTATGATCTTCTAAATTCCCTGG---TGCTTTTTAGAGCTCATTCCATGTATTTTAGTAGAGTGCACATTCTTCAACTAAAGT--AAGCTGTGAATACACAGTCATTTGTCTTTCAATACAACATAAAAGAAAGA-------CAAAGCCTTTGTTGCCCTATACGAAATAACAAAGACACACAT--ATGTCACTGAGGAGAGAGCTTCTACTCCTCTGAA--GGTCTTCAGCACAGAGTGAAC------TATTAGAAATATATTCTTTAGT-----------------------------------TGAGCTATGTAAAGGTACTGAGTTTTAACAT-TCTGTAATTATATGACGATTGTGAAAGTCTTTGAATGCTATAG-AGGTAAATCCCTATTAAACTTGTATCTATTTAATGATATTTTATGCACTATGCATAATCCAGTAAATGTCGACACAGTGATACACAGTGT-----------CTTAAATCAGGCATTATAGAGAAGCTCAACACAGATGCTTCTGTAACCCTTCCCTAAAGCAAGCGCTTCCAGGAATTATATTTACAGAAAAG-AGAAATCCACTCTGGAGATAATACACATAATCACATTTGCTAAAAATGGAAAAGCCTCATTACATTCTTGTTTGGTATCTTTTTACATCATCACCTGCAGCTAAATTCTGTTGCTGTTTCTCTAATACCAGTAGGGAGAAATCTCCAGTAAGAATCTCAGAAAATAGCAGCCTTATTTTGCAGA-CTCTAATTATGTGACTTGAGTTTCAGAGTCTCCTTCAAAGAACAAT----ACGGAGCTCTAGGAATGTTGCAGAGGATACATTGTGAAGAGG--CTCTCCAAATAGATCATCTTTGAGA-----CTAGATCTCTTTTTCAGAAATGTGGCTGGAGTTTCCATTTTGAGAAGAGTTTACATGCCATCGTTGAAATCAAATCCTCCGAATTATTTTCTAATAATATGGTGAATTCTGTGA---AAGTAGCAACCCGTGTGGCA--TGTCACAATCAGTTCCTTCCATCCAAG--ACGGAGTGCGCTGCTTTCATTTTGTTTCCCGTGATTTTAATTATTACT-CTTCTTTAGGTTCTTTTGACCTCACTGACTTATTTGTGAAATGTTGTCACAGCCACGTCATGTTCTTTCTCACCCAGCTACATGTGCCCTTTTCAGTCTTCTCTGGTGTTTCTGTGTGCTTC-------------TTCCG-TCCATCAGATGGACATCTAAC--CAATGAGAAGTCTGTTGAAGATACAAACCTGTCTGTAGTATTTAGCCTTTCAAACCTGCTTGAGCAGCCACCAGAGTTGCTC--------------TAGGTAAGAAG--------TAATTATAAGGCTTTCAAATTCCTTTTAGTTTTTAGTTGTTTTGTTTTTTAACAGTTTGCATTTTCTTCAACCCTATTATAGAATACCAAATCAATTTTACATTAGCTATTGAAAATTTATTATCATTGAAACCAA-TTTTAATTCTACCTCAGCCTTTATTGAATCAA---TTTAATAAAACATTGGCCTTTA-AATTCAAGATTAAATCTTGTTTGATTAATTTCAAGCCATTTTTTCC-AAGCTATTTGTACAATTACATGATATCTTTTCACTTGATATTCTATCTCATCTGAGAATTTAATTAATGTTTTTAAACAGACCAAATGCATACCATATGTGAAGACACTTAACACAGTAGAGTTGAGGACC-CTAAGAGCAAAAGAAATCAC-ACATACCCACTACCATAAACTCTCAGTA-----TTACTTT----------GCCTGCAGCCCCATGCGACATAACCTTCTGCT--GACCTCAGTTATTCCCACTGGA---CTCCTCAGTTTCCTGGGTGATAAATGTTCTTACT
s HiC_scaffold_1 144111684 1882 + 233722169 ATTAACCATCACACATT----------GTCAGCC-AATTGGGATGTTTTAAATTTGGTAACTATGACTATCATAAATCACTC--TGTAACAAAATGAAGTTCAGATT--TAAAGTAAAACTCAAACTGGGAATACTAACCCATTCACTTTTCAACATAACAAAGgagaaagcaaataattaaagtTTTT-----CATATATGCAATGCTATAGATACATATTAATGCCAATAAGATGTGG----CTATTTGCTTGAGTGGACTTTCATTCCAGAATAAATCTActtttttggaaatgttttccttGCTGTCTTAAATTCTGAAGATTAAATTACAAATTATTATGGAATACATAAAAGTGCCTA-TTTTAACATATTTCTCAAAAAGAGGTAATTCTAAACATTGGCATAT-TTATGGCAGCAAAATCCTAACTATATTTGCAATAGTTGAAATAGATTTTGCCCACTGCACATAATCCTATAGATATTG-----TTGATGTACAATGTTTTGTAATTCGCTTAAATTGGGTATGATAGAGAAGCTCAAACTGAGCTACTTTATAGTCCTTCCATAAAGCAAACGCTTCCAGGAATTatatttacagaaaaggaaaaatctgcACTGGAGATAATGCATATAatcacattttctaaaaatgGAAAAGCCTTCTTACATTCTTGTTTGGTATCTTTTTACATCGTCACCTGCAGCTATGTTCTGTTGCCATTATTCTAATAGTAGTAAGAAGAAATCGCCACTAAAAACCTC--AAAATAGAGGATTTATTTTGTAAAGCTGTAATTATGCAACTCAAGtttcagcttttctttcaaagaataacaaTAAAAGGACTCTGAAACTATTGAAAGAGAAGCACTATGAAGAAAtcttttttgaatatattttcttcaaaaaatactaaaatctc---TGCAGAAACAGG--TGGAGTTTCCATTATTAGAAGAGGTTCAATGCTCTGGGTAAAAACAACCGCTCAGGAGTATTTGCAAATAATATGCCCCATTCTGCAAATGAAGAATCAGCCTATTTTACCATCATCAAAATTAGATCCTTCAATACAAGCCACATATTTTGCtgtcttgattttgttttccaaaagttTAATGTTTATTGTTTCTTTAGAAACATTCAGTTCCTTTGAAGAATCTGTAGAAAATTATCATAACACTG----GTCTTTTTTCAATCAAGGGTAGCTTTGTCTTCCAATCTT------TGTCTCTAAGTATTTCACATGGAACCATTTTCCATTTTACTGGATGGATATCTGATAACAATAAAACTTTTGTT-AAGGTACATATC--CCCATAGCATTTCAACTTC---GCCATGATCAGGGGACACTAgaatttcctttctattttgaTGGTGGGGGAGAAGGGTAATGATAACTATAAAGACTGAAAACTCATTTCCCTTACAGA--------------AGCAGCTCATGTTTTCTCTAACCCTATAATAGAATATCAAATCAATGTTATATTAACTattggagatagcactttattgAAACCAATTTTTAATTCTCCTTCAAGTTTTATTAGatcaattttttaatgaaatactgGCCTTTATAGGTGAAGATTGAATctcatttgtttaatttcaagACATTTTTCCCTAAGCTTTTTGTATTATAATGTTATCTC---TCACTTGATACCCACTCTCAGAGGGGAATTTAATTAATG-CCGCGCACA-ACCAACTGAATGTCATTTATGAAGATGTTTAACAGAGTACAGTTCAAGACTACTCTAGGTGAAATAAAACACTTCACAACCGCTGTCAAACACTCACAATAAATTCTTACACTTCCCACTTAGGCCGTCAGCAACCTGTG-TGTAACTTTCTACTGGGGGCTAAATGCTTTGCACTGAAATTCTCATTAGCTACTCCATCAATGACTTTTCTTACT

a score=36082
s chr3           156945331 2759 + 160039680 taaaccccagcctggatacagaagacaaaaaaggataccccaactcagccaagaagggaggggaaagagaatgaattttc--------ccttcctgtgcccttggctccaatacttatgt--tgggtgggttggaccattctcaaacacatgtgggaagaaccaactcattaactgaatccccacattcaagtgctattcttaaccccaaattccttcactaatacacccataaataatatttAATGTGTGTATGTCTCAGTGCTGTAAC-CTAGGCAGAGAACACTATACATGGGAGATATAAGCAAAGGCCTAGACTCATGTCTTC-TCATGACCACTCAATCACCTTAACCTCTGAATTAAGACAAGTCTTGGGAAGTGAATGTCAGTACCAGTGAAGGTGGTCTC-CTTCCTAGCACAAGGCAGTTAGTCAAGCTCATACTGT--------------------------GAGAGGTGAAGCCATGCCCAACACAGACTGAAAGATATGTGTTCAGCCCACACAGGCTT----GTGTCTGCCATATGCTGGCTGAGCCCCATGCTTGTC-CTGAGATGGAGTTAGTTTAGAAATAACCTATGATTTCAGGAACGTCTTTACCCTGATTCATCCACACAGGATAAGA--AATCATTCCTGAGGATGCAAGCTAAGCCTAATTCTGGCTCAGATGCTGTGTAGGTACCAAAGTGGAGGAAACATGGATGTAGAGGGCAATGAACCCAAATTTCCCGAGAAACC------TGTTAGAATCGTCCACCATAGGCAGCG-AATGTGTGGACCCAGATTTCTTAGGCAATCCT----TTGAGA--TCAGCTACAAATCAGA-ACAGCTGGTCTATAGCACTGGGCCTCATTCTGTCGTTAGCCAGAGTCAAGAGATCAAAGACTGATC-------------------AGACTG--TAGGGATCACATTGAGTACTGGATTGGGA------CCAGCCCAG-TAGATTTGACCATTGAATCAGGTTTCAGTGCCAGTTGCTTTCTCAGTGT-------TCATAAAAAGATGGCTTTCTCCTGAAAAACTTTCCTCTGGAGAA----CTTGGGTTGTCCAACACTAGAAAAACAGTTCTTTTCT-------CAGAATCTAA----CTCCTCCTAATACCCAGGAAACAGACAGACCACAGCACTGATAAGAAAGAGTTAGACATATTTGT-TCTAGAAAACAATACTATCTGGCTCCAAATTTTATGTGGCTTATTTTATTTTCTTGTTA-------AAAC-TCAGCACCTCACTACTGACAGGTATAGA-AGTATTTTTTTTTCCAA--ACAAAAGAAATTGAGC----AATATTTGACTTACATTTAAATTACTGGAA---AATGCACAATAAACAA--TAATTTCATCTTCTGCTGATCTCAA----CAGTCATCTGCTTTGAGGAAGTAGGTGGACTCCTTCTTAGTTA--AAATGATACGAATACCTCC----------------------CTGTGAGTCCTCTGCTGACACATCAGCTTCTTATG--AATTACCTTTGCAACTTCAGGGCCCAAGA----CGTGGCTGGCTCCACT--CAGTTCTCACAAATGTGTAGACACATGGTGATTTACTGATAGTCCATGTTCTTAGCCTGTTATTTACAGCCATGATAGCTCATGTGAAGCCATCCATTCATACAGAGAGAGACAAATGAATCCCAGACGAGGTAGACATTTATT-TCTGAAGTGCTTTTATATAAAGTGCAGCCAATTCACACTACCAGGTCTGCTTCCATCATCAGTCCACAGCAGGTGCAGAGAGTTCTGACGCAGCTGTGTGTACTGCTAGGCACAGGACAGAGATTCACACTAGATAATCAAATACCATCAGCCCATAGTCATAGGTCTGTTTTATTTGCACCATGCCTGGCATGGGAGTTTCAGAAGTAGCCATCCTGTTTGCATTATCATACCTTGGTTTTATGAATTACCATTATTCTTCTCTCCTCTGTTCACGTGGTGAGCCACATGAGAGGAGACTAGCTCTTCATTGGCTCCTTGTTAATGGCCTTATCTTTACAACCATTTAGCAAACCTTCATTGAGAACCAACCAAA---TGTCACTGGATGCTTTGTTACAGCTTGCTGGTAAGCTGGATGAAAGTTCTCCAGGGGAAAGTGGTGGCTGTTTGCAGTTCTAAACTG--TGGACATCAGAGCTGACCCTCACTCTGTGGGCTTTTAATTTGTTTTGACACTTGAGGTCACATCAGCTAGT-ACCCAAGAGAGCTTCTTTTTGTAAGAGTTCATCATTCGCCCATGCACTCCCCAGCAAGAAGAATCTAGGAAAAACCTCCTTTCAGCCGGGTGTCTCTGACGCA-------CTGACATATGGCAGGAGGGGGTGCTCTGTCACTTTGATCATCTGCTTGTCAGCACAG-AGTGCTGTGTTGATTCTGTCACTGCTGTCACCGTTCTTCCACACTATCTTGTACTCTTCCCTCTCATTCAAGCCTACTATTCAACCTGTCATTGAGTCTTGTCATTTTGCCTTTGAACTGTCTTTCAGGCCCTTCTCTCTGCTCTTTCCTCTGTG-GTCGCAGTCATGGAGGCTCGGGATGGCTGCAGACTGGTTCG--AATGGTGCTGTGGTAGCAGCCTGTCTTCTATACTCATGCAAATCCAGCCATCCAAACCTTCTAGGCTCCTGTCATGCCCACTTCTGCCACCCAGAGCCATGTGCTTC--CTATCTGAGAAAATGTATCCCTACTTGATGTCCTAGTCCTTGTACACCAGGCTTTCA-CTTGTCTGAGAGGCCCAG-----CTGGAT----------------------GTTCCCCTCTGCTGCATTTTTTTATCTGCCTGTTCACCATCCCAAGAGTTCC---CTTGTCTTCCCTGTCTGAATGTGTTTCATCCCTC
s HiC_scaffold_1 144115897 2675 + 233722169 TGAATCATGGcttgaaggaaggagaggagaggagatgtTTCTGCTCACACAgc---gaagaggaaaatgaaaaaatttgcaaataaCACCTCCCTCTGCCTTTAGTTC---TGTTCAGGCCCTGGGTGGGTAGGGTGATGCC--AGCCCCAGGGGGAAGGGAAAGTGTCTTTGCTGAG-CCCAGAGCTCAAACGCTGT--------------------GCAGTGGCACTCAGGAGCAATGGGGGACCCGGG-----CTCACCGCTGCTCCATTTGACAGATAAGATTAATCA------GTATGCCCGTAGATCTAgatatatattttccttattaCCAG------ATTTTGAACTAGGAATCAAAACAAGTTGTTGAGAG-GAATGCCAGGATGATTGAAGTTTCTTTCACATTTTACCACAAGGCAACTTATTTGGCTAacgttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtaacccaaAATCCAAGATTGAAGAGAAGTCATTTACTTGCTCAACAAACATTTCCGAGTGTCTGCCATATACTGG----GCCCTGTGTTTGGCACTCTTatgcaattaatttaaaaataatctgtgaTTTCAGGAACAATTCTAACCTGAATAAGTTAGGGGGAGTAAGACAAGTTATTCATAAGATAACAAACCAACTGGAAAACTAGTTTCAATCATGTACTTATACTGCAGTGACAGTCTTGTAGATCTTATGGAAAATAAACCTTaacattctaaaaaaaaagaaaaggtcaaaATAATTAAGCATATAAAGAATGATGCTTGGAACCAGATTTCTT---CAACCCTACTGTAGAGAATGCAG-TATAAATTTGATACAACTGCCTTGTAACACCAGGACCC-TATAGGCATAAGCCCAGGTCAGGGGCTGAGAGACCGACTGAAGGTTACATATTGCTAGAGAcagaacaaaaatcacacaaagcCCTGGCATGTCAGAGCCACCAGCTCAAATGgcatttgtcatttgttttgtaTGCAGCTCTGCTTTCTTCTCTATTGCCTCTAGCTCACAAAAAGACTGGTTTCTTCCATAAAGTTTCTCTTTGTCGAAAATTCTAGGCTTGACCAACCatggagaaataaattttctcttctttcacagtgtataattttctcttcctgactCCCGAGAAG-----AGACCAT-----TGATACGA----GTTAAGGGTATTTGCCTTTAGAAAACAATAGTGTCTGActcagaattttacaagatatacTTTATTTTCT-GTTACAAAGAAAAACACCAGCACCTTCTCAATATCGGGTACAAAGAGTACTTTTCT---CAGTTACAAAAGCAAT-GTGCCTATAACACTTCCcctatatttatattaatatgagTGAATACAGATTAACCAAAACAAGTCTATTTTCTGATGATCTCAAAGGACAGTTCCCTGTTTTGAGGAAAACGAACAGCTTCTTTTTATTGACTGAAGCATAACAATGCCTTcactctggctaacatttccagattCATGGACCAGCTGCTCATACATAAGCTTTGGGTGCCAGCTATGAGTGCAAATTTAGGGCCCAAGAAAACTGTGTTTCCCATCACTTTCAGTTtccaaatatat---------taataattatttgatAATAC-TATT-------TGTTATTTA-----GTAATAACACCTTTATAG-------------------------------------------------TTTATGGTCAAGATCACTCTTAAATCAA---CAGCTAAG--------------------------------CAGAGCAGG---AAAGAAGTTTGAGGTAA----GTGAGCTTCTCTG--------ACAAATTCTC-----------------------CCCGTAGCCATTG--------CATATGCATC-----TGGGATGGG--------------CCATCTGGTTTTGCCTAAGTGGGCCTGGTTCTGTGATCTGTCACAGTTGCTCTTTTCTCTGCTCTCTTTGCGTGGTGCATGG---------------------------CGTTACCCTCTGTCTCCTCACACCAGTTCAACATACCTTTAGAGAGGGTCTTCCAGAAATTGCCATTTGATGTTTTATCATGGTTTATAGGGGACCCAGATGAAGCTTCACAAAGAGAACATGATGTCTCTTTGCAGCTCTAAATTACATAGACTTCAGAGATGGCCTTCTCTCTGTGGGCCTTTAATTTGGTTTGACCC----------ATCAGCCAGTTACCTGAGAGGGCTCCTTTT-GTAGGAGTTCATCATTTGCC-ATGTGCTCCTGGGCAAGAAAATCCTAGAGGCAGCTCTCCATCGGCTTTGTGTCTGTGATGAGGAGCTTTCGAGCACGTGGCAGAAGCGAGTGCTGTGTCAGTTTGATCGTCGGCTTCTGAGTTCCGTGGTGCGATGTTGCTTCTGACACTGGTGTCACC-CTCTTCCACACTATCCTTTATTCTTCCCTCTCATTCAAACCTCCCATTCAGCCTGTCACTGGGCCCTGTCATTTTTCCTTTGAGTTGTCTTTCAgg---ttccctccttcccttcctcattACACCCCTCTCACCTAAGCTTGTGATTTTTGGAGGATTTTGCAGTAAAGTCTCCACGTTTCTACTCCATCTTGCACATTTATATCAGCCCAGC---TCCtactttct----ttctgttattttctgttCAATCACCTAGCATCTCTCCCTTTTACTATCTAATAAAATGCATCCAAATGGTGCATCTGATTCCTTCCCAACCAGGGTTCCCTCTCATTAGAGACACCCGGTAGACCTGAATTCAAAACAGCAGGCTAAGAGGAGTTCCTCATTGC------TTTTGATATGCTTTTCTCCCAACCCCAAATTTCCTGTCTCCTCTTTCATATATAAATCTACTCTGTCCTCC

a score=51091
s chr3           156951745 4926 + 160039680 [encoded data, 5315 characters]
s HiC_scaffold_1 144119216 4552 + 233722169 [encoded data, 5315 characters]

a score=29033
s chr3           156958543 960 + 160039680 TTAATGTCCAGAAGTAGTCGATGTTTTCTTCCTACGTGCCCAGCCCCATGATTCTGGAAACGGCCAAGGAGAATGGTTTGGCACCTTTCTCAGGATTATATTTTATGTATAGCTTAGTAC--CTCTCATGATACTTAGCAGGATGGATAGAGCACATTTCATTTAATCAGATAGCTGCTGTAGGCTTTCAG--AACATCAG-----AGGCCCCTCAGGCGGGCCCGCCATCATGAAAGTGCCATAAAGCC-ATGTGATCGCCACCTGCAATGTGGAAAACATGAGCAATAACTTACCAAAATATTTCCAGTGAACATATGACTTTGACCCAGATGGCAAAATCTTCTGCGTTGGCCATAAATCTGC-TACAGAGCGTGGGCAGGT-GTACGTCTGCTATCATTATGACTGTTTTCTCCACGCTTTATCTGTTCATCCTTTTCCTAAGGAAATAACATTTTTGGAAATATTGAAGAAGAAACAAAACACAGCCTGCAAACCC-------AAGCTGTAGGTTTTCTAAAATTTAGGTTGCATGTCCTTGTATCGTAGGCTGAGATATCAGATGGTAGGAAATAAAGGGGACAGGGGAGGGAGGATGAAGGTTGAGAACAGCAGAGAGAACATATAAAAGCTGACAAGTGCATTTCATATCACCTTTTATAGCAATAATCAGCCTTGAAATAAAATGTTTGATTTTTTCACAGAAAAGCAAACAATCCCTAAATATTAAAAGTTTAATTATACCCCAACTCCTATTACCTATCACAGTTGCTTCTATGCAAGATGAAAG-----------------GGCACAAGAGTAGATGATTCAGAGACAATTATCTACT-------GTTTGTGA----------------------------ATATGTTTGCATATATCTCTCCTAGAAGATATGTA--TATTTCCTATCTATTATCTGACGTAGAAATATTTAGTTCTGAGTCTAAAAACATCTTGGGAATTTGAATTCTGGAGAAAAC-ACCCCATTACCTTTCAATAAAT
s HiC_scaffold_1 144124051 985 + 233722169 TCGATGTCCTCGAATAgcttctttctccctcctggatGCCCAAATCTGT-ACTTTGGCAACAATCAGAGGAGGTAACTTGGCACCTTCCTCAGAGTTACATTCTGTGC----CTTAGGTGTGCTCCCGCGCTGGTAAGCGTAATGACTACAGTGAATTTCATTTCATCAGATCCCTTCTGCAGGCATTCAGGAAAGATCAGCTTCTGTGCACTTCAGTCAGACATGCAGTTATGAAAGTGCCATAAAACCTGTGTGATCACCACCTGCAATGTAAAAAATGCCAGCAATAACTTACCAAAATATTTCCAGTGAAAATACGACTTTGACCCAGATGGCAAAATAGGCTGCGTTGGCCATAAATCTGCAGGTGGCGAATGGGCAGGTGGTAAATCTGCTATCATTGCTACTGTTTTCTCAACACTTTATCTCTGCAGCCTTTTcctaaggaaataaaaactcgTGAAACGTGGAAGAAGAAACACAACACTGGCTGGAAACTCCACTGTGAGGCTGTAAGATTCTTGAAATTTAGGGAACCTGTTCTTGTATTTTAGGCTCAGGTCTGATGCACTGAGTAGTAGA-GGAATAGTGTACTGAGAATAGaggataattatataaaatagacCA-------------GAGTTTAGTTCCTGTCAGTTTTGGCAGCAA-AATCAtcttgaaaat--------------------------gcaaatattctctaaatattaaaatattttgtacctCCCAAGTTCTATTTCATATCAGA-CTGCTTCTATGCACAGAGAAAGTAAGGATTAGCAACATTATCACCATACACAATGAG--AAAAACAGTCATCAATTTAGAATAGTTTGTGATCacaattccattttaaaagaagattctATTGAGTTGGATATTTTTCCCCACGATGGAATGGAGGTACTCACAATCCATTATCCTGTGAAGAAGTCTTTAATCCTGGAGTAAGAAATAATGCAGAAATTTGAACTCTGCAGGAAATAACTCCACTACATTTTAAGAAAT

a score=39716
s chr3           156979822 1718 + 160039680 ATAAAGACATTTTCATCTAT-TGATTGATTGATTGCTACTTATTATTGCTACAGATGCCTTCA-ATAA-ATAAAAT--GATTTTCAGATTTTA-----------ATTGGTATATTTTGATCATCTAGATTTATCACATTGTAAGGAGTTGGAAGGCAtgtttatctttatagccttgatgcctagcaccaagcctggcaagcagatgatgtgtggaaactgttttatgaatgaatgaaCGATGGAAGCAATTTAGCTTATGTGATTTGGCCATGTGGGTGGCCCTTAAATCACTCTTTGAAAAGTGAGATAAATGAGAGAGCTGGATGGATTTCCATGGCAGTAAATTCCTAGAGATGAGACTAAGGCCTATTATGTCTGTTTACTTAACTGCCTTGTGTAATGATGACAGGAGAAGCATGGTGATACAGGTTAATCAGAACCTTCTAGAAACGCAACTTCCTACCCAGGCCCGTGGGC-TCCACAACATCGATAAATTGG--------------AATCAGACTAGAGAGGGAGGCATCGCTATTTTTCTTCTCTGTGTACCTATCACTCATCCTGTC-TGTGCCCTGCTGCGGCAGC-CTCGCACACGTGGAGATGTATGTTTAATAAGCCATGGGTGCAGATCTTTAACGGATGCTCTTCAATCACAGAGCTGTTAAAGATTTCATTATGGAAATGGAAAAAACCAAACA--CAGACTCTTATTAGGTTTGCAAGTCAGTGACGAATTGGCATATACAGGGAGCAGGCGACAGCCAGACAGGTGCTGTTATTGTCATTTTTATTTGCTTTGAGCTAATTTGCTGAGCATTGATTTAAAAGCTGAGAACAGTTTGCTCTAAGAGGAGGAAAATTGCACATTCTCTCTGGGCATCCACTACTCTGAAGAAATCTCTCTTCTT------TATTGTTCTCCTTTTTCTCTGAAATAGCAATATTTAATAAAGAG------GACGTCATTACACTAAAGATCCTGTTCATTTTCACTTTAATGCTCTT-CAAGTTCATGGTTGATGCTACCTGCAATTGCAGCAGATGGAGCAGTAGCTTGCTTTCTCAGAAGTCATGTGACCACA--CGGAAGTATCATAAATACTCTT------------TGTAGCATATGCCTGCAGGACTG---AGTTTTGTGGCTGAAAGGCTT----TCCTCTCTCCCTGGGCTTAGCTTTTTC-----CAAATACAAAATGGAAATGTTTTCTTCACATAATGATTATGGGA--------ATACACCCAGTTAATGAA---------GGAGTATGCATGTTGTCTCCACTGTAACCAACTGGTGATAGGAAGTGGAGAACTTGCCAGTGGT------AGACTTGTTAACACCC-TCATAGATGCTGAACAATTTAAAGTGCTAACAAGTCTCATGAAGTTTTAAGAATCATGGCATGTGTCAGTCCTCTCTGTGTGATTTGAGTCCTCAGTTTTGGAGAAACTCACAGAGAC-TTCCCCTTAAAAGATGTCATGTTT------TTGGTAT-GTATCCTAGGGCTCCATTG-GGTGTTGTATTTC---------------ATCATGCCATTCATAA-TTTTATATGTTAGGGGCCAA-ACCTTTACTTACACTCACTCAA------GTCATGATCTGCTTGGAATAAATGAATGACATCTTTACA-ATATTCAAAACAGCCATATTCAGAGAGATGTGCATGACAGGGTAGGAGTT---------GTTTTCAGGTAGAGCAGAACGAATTGGGAGAC---AGCCACAGTGTCTTTTCAT------------TTGTGAAAACAGAAAGATG---CTGTGTGGGAATCCTGATGCTCCATCATGA
s HiC_scaffold_1 144132190 1814 + 233722169 ataaagttatattcatatatattataaaatcatgTATTCATATCTATATTAAAAAGGTATTCAtatattataaaatcatatattcatattatatatatatatgtatatatatatatatatattctggatTCATTTCAGGGTCAGGAATCAGATCAC----TTGTCTTTGTAACTCCAATGCCTAGTACAAAGCCTGAGAAATACATGATGTATGAAATCTCTGTTATAAATGAATGAACTATTATAGCAACTTAGCTGGTGCTGATTCACCCTGTGGGTAGCCCTTAAATCACTCTtggaaaagtgaaataaatgagatagcTCACTGGATTTCTATGGCAGTAAATTCCTAGAGATGGGGCCAAGACCAGTTTTATCTGTTT-CTTAGCTGGCTTGTTTGATGAAGACCAGAGCAATGTGATGATACAGGTTCATCAAAACCTGGGAGACGCAAGACTTTCTGCCAACGCCCACATGTGTCTGCAGCacaaataaattggaaaaaaaaaaacaaaaaaaaaccaggaatgGAGGCAGGGCCATTCTTCTTTCCTGGGTAGCCGTCACTTATCTTGTCATTCGCCCAGCGGTAGCAGCTCCTGCTTGCAGGCAGATGTGTGTTTAACCAGAAGTAGGTGCAGATCCATGAGGGCCGCTCTTCCATCATGGGGC-GCTAAGGATCTGACCATGCAAATGGAGAAAACCACAGATTCACGCTCCTACTGGGTTCCACAGCCAGTGATGAATGGG-----GTAGGAGACAAACTGAGGAGAGACAGGCATTATTGCTGTCATCTTTG-----TTTGAGCTAATTTGCTGTGCATTGATTTAAAAGCTTTAGACAGCTTACTTGAAG-GAGGGGCGATCACATGCTCGTTTTGGGTGTCTCCCACTCAGA--AAACCTCCCATCATTCCTCCTATTGTTCTCCTTT---TCTGAAGTAACAATATGTAATAAGGAGCTGGGAGGAGTTATTATGCAAAAGAGTCTATTCATTTTCACTTTAGTGCTTTTGGAAGTTGAGAGCTAATATTACCTTGGATTA-AATACATGT-------TCTTGTTTGTTCAGAAGTTGTGCAGCTACAGCAGAAAATGTATTAAAGTCTCTTTTGATCTCTCTGTGCAGAATACACCTGCAGGCTGGGCCAGCTGTGTGGTTGATATTCTCACTATCCTTTCTTCTACTGCTCAATGTCTTCATCTACAAATACG----GAAAATATTTACCTGGCACAGTGATTATGGGAAAGAAATCATACACTTAGATCATCTAATTGCCATCAGAGAATACATA-------CAAAGAAACTAG-TGGTGACAGAAGAGATAGAGCTGGCTTATTCTCCAAAGAGAACCTAAAACATCCATAATAGATAAGGAAGAATTGAATTTAATAGTGCATttgataaaatctttaaaatgatg--------tAGTTTTCACT---TGGTTTAAATTGTAATTCCCATTCTATTTCACCATGTTATTTGTTCTGAAAGTTTTAACTTTTGATAAGTTGGTGTGGCATCCCAGGAAGGtatagcagttttatttttctttgtaaaaagtcGTACAACGTTATGGGTAATTTTTTTATGCAAACAATCAAGATGATTTCTTACAGTTATTTTACCCATTATCATTTTCTGTTTGCTGTAAGTAAATGatgtcttaaaatatattttaaaagttc--------agataTGTGCATATGTAGGTATGATTTCACCAGAAGTTTTtcaaacagagtgataagaa-taTGAGACCTGAGCAATCTcatctttttgtatattttttgtattatgagaatagaaaaaaaaatctctttgagTGCCTCCATGCTTCTTCGTGA

a score=28699
s chr3           156981778 1443 + 160039680 GACTTATATCTTGCTTAATTTTAGAAATGATGATGGAAAGTTCTTAATAAATGTGATGTGAATAACTGGCACA---ACTTTCTGTGGAAAAA---TACAATAAATTGAAACCCTTATATCATAATGAGTTTATCTTTTATCATTTT-ATTTGATTAAAGGGAAGTTGAGATATTAGCAAAAATAGTTCT------GTTATTCTTTTCGTCAGCAGCTATCAAATTTTTGTTTGCTTTT-CCAACACCTGCTACTTAGAACATACACAATAATTTTCCATTTAAA--------------------------------------ATATAC---------CAAGTGAAATACACATTCTA------AAGCATGAGAACTTGAGAGTCATGTTTGCAAACCTTGATGAGCAC-CAGTGAAATCTCTAGCTATATACAATGTGC-AATTATCTCTGAGACTTTGCT-GTGTATTATTATCCTGGAAAGTGATGCTTTGAAAGAGGGCAAATCCATCTCCGCAGTTCACATACAAGCATGAATTGGATGGTTTCTATGTGTGTGGAATG------CACATACTTGGGAAGTGAGGCCAGACACTGGACCCCTGCCAGCA----TCGCCGAGA------ATGTGTCTGACATCTGTTTGTACTAATTAATTTACTTTGCAACATTCCCAGTGGCT-GGGGTATTGGCAACAGGACTTTTGATTGCTGTCTTTCGCCAGGTTTGTAACACATCTATAAGCAAATATAGCCTAAGGTAAGTGCCATATTCCTAGGGATGAATTCTAAACACTTCAGAAAAAAAGCTTGT-TAACATCAATATAAAAAATGATAAAAATGATAAAGTTGGGCCCTATACTCCTAATGCCTCTCCCTCATAGCATGAATCATCAACTATCTTATTTAAGGCTAA----TGGTTTATTATTTCATTTAGTCTATTTATAT-TGAAAATACATTAAAAATTAACAAGTGTAACACATTTTATATTTACCAAGCAAATATGATGAATGCTAATATTCAGATTGTTAGTCT---GTAACACAGATAGA-AAATAAATACATCACAA-TAATTTAACATAGTCATATTATCCATTATATGATAGACATTGTGGAACACACATTGGGCTAACAGCAACCATTATCCGTTACATGATAGACAGTGCGGAGAACACAATGGGCTAACAGCAACCAAG-CTGCTGAGATTCATGATTCAGGAAACTCTTATTTTGATGGAGGTAAATGGAAAGAGTAAACATAGATAAATAATAATCATGACACATTAGAGGCTGATG---AGTTCTAGCAAAGGAACTTTATCAAGGACCACAGAAAGGTTAAGGGCACATGTAGGATGATCATGGAAAGAGTTTTTGATGAAGTAACATTTGAATAAAACTTTTAAGAGACTAGAGTGAAAATCCTAAGGGAC---TCTTAAAAAGGAATCAAGGC-AATGGAAATTTAACAG----GCCCCAGAGA---GGGCATGTCAGAAACACAGAAGCCTAATG-GGCTGGTGAGAA-ACAGGAAAGACTG
s HiC_scaffold_1 144135705 1430 + 233722169 GAGTTACATACTGCTTCATTTCAGAAATCAGGGTGGCAATTTCTTGGTAAATGTAAGTCATATGTTTTGTACACaaagttattgtaaaaaaaataggtaatagATTGGAAACCTTACATCATT-TGAAATTATATTCCACCGTTTTTATTTGGATAATGAGATATTGAGAGGTTAGCAAAAGCAATTATTCTACAGTCATTATTTGT-TCATTAACCACTtaatttctgtttgctttttccaATGTCTATCACTAAAAACATGCATACTAATTCTCCATTTAAATAACCCAGGTGTGCACACATTTCTATTCAGTGCCTATTATATATTACATCCAGCAAGT-AGTTAAGCATTTTACAAAGGAAACATGAgaaattgtaaatattgtttGCATACTATAATGAGCTTGCAATAAAATTGCTCGCTAAATACAACCTTCCAATTATCTCTGGAATTGTGTTAGTGTGTTATTATCTTTGAAAGTGATGCT-----------CAGATTC------------CACATGTGAGCCTGAGTTGGATTGTATGTACATGCACAGTCTGTCCTTCCACCTTGCTGAGGAG-----CCAGCCACTGGACCGTGGCCAGGAgagcttgtagagctgcattaCATATGTGACATCTGTTCTTACTAATTAATTCACCTTGCAACATTCACAGTGGCTTGGAGTATTGGCAACAGAACCTATGATTGCTGTTTATGATCAGGTTTACAGCCCATAAATATACAAACATAGCCTTAGATAAGTGACAAATTCCT---------TTCCAAATATTAC--ACACAAATCTTGTCTTGtataaatagaagaaatggaagaaatcatA--------TTCTACACTTCTGATTCTTTGCTCTGGTATCATAAggctttgattttttcccttgaCATTGATACTTGATCTATTATTTACTTCCATTTAATGAAATGTAAGAATCTAATAAAA------CAGT---ACATAATTT-TACTTACCATTCAAAAAACATGAATGCCAATATTAGGATCATTATTTTTGATTATCACAGaaggatacatacatacattagaattaatttaatatattta------------------------tgtagAACATGTAGTATACT-ATAGAGACTATTCT------------------------AGATGCAAC--GTCATCAGTAACCATGACTGATAAAAATCCCTATTCAAGGAACTTTTGCTTT-ACTGAGATTggggaaaaaagtgaa-----atatatgat-----ttgtATGTTAGAAACTGATGATAAGTTTTATGGAGGGACCC---TCAGGAACCATGCAAAGGTAGTATTTGTGAATAGAGTGATCCAGGAAATTGTTTTTgac-atatgatatttaaaaaaagacttaaaagaagTGCAAAGGACAT--TGATGCATATATGTGAAGGCAGAGTCCAGATGAATGAAAACTGCAAGGCATAGCGCCTGAGACAGGAGAAAGCTAGAAAGCTGGAAACCTAATGAAGCTGATGGAAATGCAGCAATGAATG

a score=10358
s chr3           156984931 516 + 160039680 TTTTTATCTTTGACACCATCTACTGATTGGCTAATTTGGGAAACTAGAACTTTTTCCATTCTGGAAAGGAAAGATACC-AATGC--AACAGCAAAGATCTTGTACAGATAA------------------ATAGTAGTAGCCTCAGTTAACCAAAATAAGTC-ATTTGTATTCCATATCTATCTGTTGTTCAGTTAAAAAGGTTAAGTACAGATAGAAAAT----GCCTAAGTTTATG--ACAAACCTAA------GAGTGGACTCTGCCAGAAACTGTGACTTAGACTGAAGAGAAGACAACTAAATAGATTAAGAGAAATATATAGGTTATCCAGTAATGTTCTTAATTTTTAAAAAA----------AAATGTCAGAAACCGTGGTGAGTCTGTAATGCAAGAGTATTTAAACTCTGCCTGCAGAAAACGATCATTTGTCAAGTCTGTAATTCCTGTCAAACAGTGTCCTATTTCT------GCCTTATGTTGCATATTTTCATAAAGGACTTG----ATATAATCTGTAATTATCTAAGTTTTGCA-AAATAAATTAGGGATCAGAAA
s HiC_scaffold_1 144141602 564 + 233722169 tttgtgttctttaaaTCAGACATTGATTGGCCAACCTTAAAGATCCACACACTTTTTATTATGACAAAAAATGATTCCTAATGACAAGAAGCAAAGAAATTTTATGCTTGAGCACCTCTACAACCAGGTATCATAGTGACTCAGGTTGAACAAAGTAAGCCTGTTTATGTACcctaaaaat-----attcaat-aaaaatgaaaagcccAAATAGAAAATTGATGACTCAGTTTATGCAGTCTGCCTAATAAGAGGAAAGAAATCTGCCCAAGCATATTATTTACAAGGAAATAATGATGGCTAAGTACATTGAAAGAA-CGTATACACTGTTGAGAGccattctgaaatttaaaaaaataaataaattagaaatcagAAAGACTGGAAGCTATTTGGTGCAAGAATACTTAAATGCTAGTTACATAAAGCTATCATTTATCAAGCACATAATTTATGTCAAGTAATGTTCTATTTCTGTACACGTATTATCTCACATAGTCTCACAAAAGTGCTGTGATGTGTATTCtataattattcaaattttaCAGAAGGAAATCAAGAATCATAAA

a score=30369
s chr3           156997166 1199 + 160039680 GGCATATCTATGTAGCCGAG---CTGTATTCCAGTCAAA-TACTAAAGTTGAATCACTAAATTTCAATATTTCTGAACAGATCCCTGACTGCATTGGAGCATAACTTACAGTGATGATATCAGAGTATTTTATAATCAAGAAAAGTGCTC-CCAGGAGAGCTTGGCGACATAAGACAATCTGTGTCACACTGTCCCACACA-------AGGAAACCAAGAAGTCACAGACACAAGGCTCTT--GTTTAAGGCTAAGGAAATTGTTGGTCCCAGAAGCTTTCCGTTGTATGACTTGTCTTTAACTGAGAGTCTCAGAAGCTAGCCCCTGTATAAAATAATTTCTGTCAAGAGACTGACTTTTC--CCCGATGAATAATTTAAAACTCAACCTTTTTTTTCATGGGAACTGTCTTATATCTTGGCAGAGGCATAGTATTTCAATAATTTATACAATTTTGAATATAATACAGTTAATGCCAGAAAAGCAATTTCTTTGATATTGAATTATAAGAGAATGCACTTAGGCCACTGTGGCTAATGACCTAGGGGCTAGGAGCATGGAAAATTACCTTCTAACCCAATTTCA-TAGAGAATCTATGCATTTAGCTATCGG-CACTGCTATCTCCTGGCATATAGTTGCTTGATAACAGTTGGATGTAAC-TTAAGAAAAAAATA------CACCTCATTATCTTTGTGAAAAGGAGAT-AAGAAAGAAGACCA----TTAAAATAGTACAT---GAATAATTATTTTTGAAGCAGAAAATTAACTAGAGCCATGGTTTTATCACTCA-------TATT--------------TCTGAATAAACTGCATTCTTGTAGCACTTGCTTAGGCGACTTCCTTAGTGATTCTAGTCACTCCTGAG------TCACG--CACTCCCTGACAGGTAAGACACACACAAGTATGAAGTGCAATAAAGAATTTCTTTTAGA---AGAAAT-----CAAGTGATGTGATGTGGAAATGGGTCCTTGGGTCTTTCCAAGCTAAATGCTGGTGAAG-ATCCCCATGAGTTTATGTGAGATGGGA-GACTTTGACTTCTCAGCTATAACTAGACCATACAGGGTACACAGCCTGTGGTAAAGACTTTCT--ACATATAAACCCACAGGCACTGTTTATT--CTTAGAGATTGGGAGATTCTGTGCTGTGGAATCT-TCTAGAGTGTGAAGACTGAGACTCTTCTGTAAGAGCAAAGTTCTCCTAATACCCTTCAAGATGCAGTTTGAGTTGACAA
s HiC_scaffold_1 144155325 1236 + 233722169 GGCATATTTTGGTTACATAGATTTTATAGTCCACCCAAAACACTAAAGTCGAATCaccaaatttgaat-tttttgtctgattctcctaCAAGATTTTATCATGACC--CATCAAGCGCACC----TATTTTCTTGCTACTGTTAATGGTCATTAGAATAACACCTCTCCATAAAACAGT--ATATCA---TGTTTAATCCATTCTTTGAGGAAATCAAAGAGTTAAAGAGATAAACCTCTTTTATTCAAGGCCAAGAAAATAATGAGTATCTGAAATTTTCAGTTGTGTGAttcatatttaaatgtaaatccCAGAAGCTAGCCTCAGTATAAAACAATTTCTGTCA-GAGACTGCCTTTTTTTCCcaatgaataatttaaaaccGAACTTTTTTTTCCATGTGAACTGTCTTATATCTTGCAGTAGGCATAGCATttcat--atttataca---tttgatATAATATACTTAATGTCATAAAAGCAATTTCTTTGATATTGAATTATAAGAGAATGCACTTAAGCCCCTGTGACTAATGATCCAGGGGCCGACAGCATGGAAAATTGTCTT-TAACCCAATTTCAGCAAGGAATCTGTATGAGTAGCCATCGGACGCTGGTGTCTCCCGGCACATAGCTCTGTGATAACAGTCAGTCagagcattaaaaaataaataaggaagtaAGTAAATCGTTCTCAAGAAACTAGATAAAGAAATATGCACATTTTTTGAAAGGGTAGataaggaatatttttttctgggatAG-----TAACATGAATCATGATTTTAATGTACAACAAACCTATTCTCTATAATTAAAGCCTGAATAGAACCTCTTCCCAGAACATTTCCCACAGCAG----------AACTCTAGTCACTCTGGAGATGCAATCATGGTTAGTCCAGGACAATGAGCAACCTCATGCG-----GGTGTGATAATGtagttcttttatatatataaatatacccaAACaatacattgtaaaaatggcctaTTGTGTCTTCCAAGACCAAAGCAGGCTGAAGAATCACCACGATTTAAGGCAGAGTGACAGGATGGTGACTTCCTGCCGGAGTCTGGATCCCACAGGGCATGCAGCATATGGTGAAGGTTTTGTACACACATAAATCCGCAGGCACTGTTTACTTACCTAAGCCGTGAAAATTTCTGTGTTCTGAAAGTTATCCAGCTTGTAATGATACAGTGTCTACAGTAAGAACCATTTTCTTTCAGGTCTCAGAAAAGTGTGATTTG-GTTGATGA

a score=61438
s chr3           156998979 3790 + 160039680 [encoded data, 4611 characters]
s HiC_scaffold_1 144156783 4458 + 233722169 [encoded data, 4611 characters]

a score=18985
s chr3           157015920  785 + 160039680 AATATAGTTGGTATTGAAACTTTATTATTAAATATTATACTCACATTGAAGCACTTACTATC-------------AATATAAATCTAACCA-AAGGACCAAAAGCTTTTCAGAGGTCTGAGTTTCTACAGAGCTCTCCAGG-----------AGACAAGATCACAAAACTGAAGAATGGCT-ATCAACAAACCTCTCTGTTAGCATGTCATGGAGTTGCAATACTCAAGGATGTTTCAACAAATCTTA-TACATACTGAGTCTCACCACAATGT-TTTTGTCTTTTCAGTCCCACCGAAAATATACGACATCTCAAATGACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGTTTGGCCACTGGGAAGCCAGAGCCTGTCATTTCCTGGAGGCATATCTCCCCATCAGGTGAG----------------------TGTTTGCCCTGCATCATT-------------------------GCTGGGT------------------------------------------------------------AGGAA---AGTGAGTGAACCCCTTCAATTTC------------CTCCTC---------TTTCATGAGGATATGCC------------TAAAGACAGCAT---GGCTCAAGAAAACTGAAGGA--------------------------------------------------------------ACAAA-----------CAGCGCAAGCCATCAGTAAGAATGTCTCTTGATTCCTACACAAGATTATTTAAGTTTTAATATTTTGGGCAATCACAAATCAATAG--AAAAGGCTCAGGTGGAATTATTAATACAGGGAATAAACTGTTCATTTAAATGTGTGAGGGACTTATTCAACC-ACATTCACATGTTGAGA-GCCAGCATGCACTGCTGAGGTAATCAGGAGAGAATGGAATTTTACAAATTGT-ATATTGCTAGGTGTGATTTAAAGCTGCTGTGCAGAATCAAAGACTTGGGTGTT
s HiC_scaffold_1 144168292 1015 + 233722169 aatgtaatcaatatttaaccttt-ttattaaatattgtgtTCAACTTTACCCATTTTATATTTAACAATTAGACAAAAATAGAGCCACCCATCAACAACAAAAGTCTTCTATAG--------TCTTAGAGAGGTCTTAAGACTCATCTTTTAGGTTAGGACCAGAGGATACAAGGAGATTTTATTGCCATAATTTACTGC-AGGATATGGAGGAGTTA-ATTACC-----ATAATTCAACAGtacttagtaaatattt--tctgaCCACTGTGTGTTTCGTCATTTCAGTTCCCCCGAAGATATATGACATTTCTAATGACATGACCATCAACGAAGGAACCAATGTCACCCTTACTTGTTTGGCCACTGGGAAGCCAGAACCTTCCATCTCTTGGAGACACATCTCCCCATCAGGTAAAGTGGCAAGAGAGGCATCATTATTGTTTGCAATTCCTTATTCTCATGTGACCTCCTTGATTCAGAACTTGGGTcgagtctttaattttttgtatattattcaacaaataaaattttctagtCATGACTGACACAAGAACTCATTGAACTGACCTTTCCAATGCCTTAAAATGTGTGTTCTTCAAAACATAATTCCAGGAAAATCTAGCCCTAGTATCTTGTAAGTGCAGTATCAAGGCTGAAAATGACTTTGAGACCCTGAAATCTTCAGAATGCATCTTTAATACTTTTACTTTATATCTAAAATCACTGTAGTTCACAAAACTCTGAATTTCTGGGAGAGGCCGGAATAAAGCTATCTTTTGATTCCTAGTCAAGGTTATTTTCGCTTTAGTATACTGGATAatcataaatcaataaacaaaagaCTCAAATAGAAATAT---CACAAGAGACAAG-TCTTCATTTCAATGTGTAAGGGATTTATTCAACTGGCATTCACATGTTAataggccagcatgaactgctgAAGTAATCAGGGGAGAATGAAATTATACAAATTGTGAGGTTTCTGGGTCTAATTTCAAACTGCTGTTCAGAATCAAGGATTTTAGAGTT

a score=30701
s chr3           157017361 1493 + 160039680 AATAAAACTGCTGTTAATGAAATCAGAAAGGAACATTCTATGTAGGTGTAGAAAGAGCACACGTTTAGCATCTTC-CTCATCTGCTAATGCTTTATTTAATATCGCTCATCCTTAAGTGTCTTCCAGTTGCCTCATTTGTGCAGTGGGTCTAATGAGACTCACCCACACTGTATGCTAAGTATTGCTATTAATGGGAGAAAAAATATCAATATGCCAGCATTACACACTTATGCAGTT-TGCATTATGCTCCTGTAAAACAGTCCTGAAGTTT-AGTGTTTTGTTGACTGCCAACACCTCACTCTCTAGAGCCTTAACAAAAATCACAGAACTGATGTGAATGTC--AAACTCATGGC-AGGCTCTCTACAGACTAGAAGTGACACAGA------------AGGCATCGGATATATAGGTTGCTATGCTGAAATACTTATTTTTGGGTTCATCTAGTCCTTGAGTGACTCTCTGCTATCTTCAAGTGTTTCCTACTTTCCAAAATTGGGTAACTGTGATTTCTAGTTATATTTTTATATTGGTAGAGTCATGGGTGTATATCAGGTACGTGATAGCTCAAATCATATACACTCTCAAGCAGTTATAACTAGCTAACTAacaggggaatgccagggccaaaaagggggagtgggtgggtaggggagtgggggtggggggtatgggggacttttggtatagcattggaaatgtaaatgagctaaa-tacctaataaaaatggaaaaaaaaTAACTAGCTAACTAACAAAT-CACTGCCAC-----TGTTTTCATCACGAGAACCCCAGCATCCATTCTCTCTGCATTTTCTAAGAGCAAGATGGAACAATGCCAGTATGCTATGCACTGTGCAGTAGATGTCTTGTATTCACTCCTTCTATCTCAGGGTAGCCAGAATTATTTTTCTAGCTAAGCATCCTAGGGGTGATAG---------AACCTGaaagagataatagacgcaaatgtgccttgagaattataaggtgatattcaaatgtaCGAATGATTCTTAATCATCTCTCCAAGGATT-AAATCTGATG--GCTCTGTGACTTTTGTAAGAATGAAGCACATAATTTCTATCTACATATAATTTTA-GATTAATATTTCAGACTTAACACTCCCATTTCACTGTACTTGCTTGCCTGCACATTTGCCTTTTTTTATATGCTGAGATATATTTT-AGTTTAATTAAATAACAAGAATGCCAGTTACTGAAGTTATTAGAATAAAGATAACAGATAGCATCAC-AAGCTGAAGGAAGACAGATTGGGTTTATAAATTAAACTGCTGCACAGATTCATTTTT-CCGTCCTGCTGTAACAAGAAAATGAGTAAAATTAGCATAAACATTAATAATTATCT-ATGAATAGCTGGACTCTGGGAATATTTT-----------CATAAATTTCAAATTATAACGTGTTAAGGCTCTACATTCAA--ATGCTGCTTCATA------------AAC----CATGTCTGATAATTCTATT---------AACTTATATATTTAT-GCTTGAAAGCAAAATTGTGAATTTCA
s HiC_scaffold_1 144169613 1335 + 233722169 AATTAATTTGCTATTAATAAAATCAGAAGGGAACATTTTATATAGGTTTGGAAAGA---TGTAGTTGGAATATTTATTTACCTGCAAatttttcctttgatgtcacttaTATTTAAGTGTCTTTCAGTTTCCTCACTCAT-----------AAGGAGACTTACCCACATTACATGCTTAGCATTATT--TACTCAAGTAAAGGAAACCAACGTGAAAGCAG-ACACACCTATCTAAATATACATTATGGCCCTT---ACCATACATAAAGTCGGATTGTTCTCTTGACTCCTAGAACTCCACTCTCTAGAGC-TACTCCAGCATCATAAAACTGATGTGATAGCCTTGAGTTCATGGCCAGATTCTCCACAGGGTAAAAGTGAAACAAATTCAGGACTAGCAATTGTTAGATCCACGggcttttaaaatgatttctttgtTCATCCATTCAGCCAGTCTTTGCATGACTGTCTA--AGCCTCA-------------------------------GTGATCCGTAGCTAC----------------------------------------TGACAGACAAAATTATACACATTTA-----------------------------------------------------------------------------------------------TTCTGTATAACAT----------AATGGTTTAAAGTATACATACACTGTAGAATAGAAACATCTATCTGATTAAGGAGTGCATTACCTCACATAGGTTTTCATAGTAAAAACACTTAAATTC---CACTTTGGACTTTTGAGAAATACAATGTCACCACTACA--------------------TAGGTCTCTTGAGCTTATTCCACCTATCTGA------CTATAATTATTAACCCATTTGATCA-ACTATGTGTGATGGCTATTGTGTGAATTAAATAAGGTAATAGGcacaaatttgttttaaaacttataaTGTCATATGCAAATCCACAGCTGGTTATTAACCATCTTTTCAGGCATTTCAATCTGATGCggcaatataatttttataagaatGAAGCACATAATCTC-ATCTTCATGTAACTTAAAGAATAATATTTTGGACTTCACTCTCCAATTT-ACAGTTCTCATCATTATGCATATTC-----TTTTTAAGTGCTTAGATATATTTTTAGCTTAATTAAATAGTAGGAATGTTGGTTAGTGGAGTTATTAGAATAATGATAATGGATAACATCATGAAGCGGGAAGAAGACAGATTGGATTTATAAATCAAATTG-TACATAGATTTGTTTTTGTAATCTTTCCATGGTGAGAAAAGGAGTAAAATTAGCATAAATATTAACTATTATATAACGAATAGCTAGACTTCGAGTATACTTTTTAAATGCTTCCAATAATTTCAAATTGTAATTCATTAATGATCTATATTCAGATATACAGCATCATATAATTTCTACTGAACGTGACATGTCTGTTAATTCTATTAGCTTTTTCAACTTATATTTTTATAGGATTAAAGTAAA--TGAGAACTACA

a score=34326
s chr3           157023116 2360 + 160039680 tttagacaactcacatttagataaattattgcct------------------tgttaca-gcttatatttgagtttggttgttttcagtttcttagctcttttttcctctctgttttattttaatcttc----ctttcttAGATTTGTACTTAGTGGCTATGTCTCTTGTATG--TCTTTTTG-----GTACTACCTCTATAAACTGGTTTGTAAATCTAAAACACATGCACTCTGGCTG---------GCCAGTCAAGGG-----TAGAACCCACATTGCAATTAGGTTGCCATACTTGAaatatgcttctttcagatatttcctctgcatccatgaaaacctgctctctcatgaaacaatgcta-aaacttcacttttactccatattaaactttgggagctcaagagaagggaagcattttgtgtttacttaacattttagtggtaacatttttcatctttcccgatgtttaatgttct----tcattg------ataggtccaaatg-----------gaagactgcttacagccattcctttctgaagggtcagttggggacgatttcatttactcttatttgtctgagaatattttgatgttgctcttcattcctCA-GTGTAGTTTCAGTTAGGAAAGAACACTGTGTTTCATGAACAAAGTCCAATCATTATTTACTGTTCAGAGAGACCTGAAGAAGAACCTTAGGGAAAGGTCTGGGAATCCTTTGTAGTGATATGCAGGACTTTTAAAAATTGA-ACAGCTATGTTATCATTAGTGTTTTCTACCAATGTAGATATTGGCTTGAAAACAGGGCAAGT-TAAATTTAAAAAAGAAAAAATAAACTATCAGGTGAAACTATGGTCA--TTTTTGTAAGCTGGGAGGCTGAAGGACTCTT--------GAGAGCAGTTTCTGGATAAA-GCATTAT-TGAAGTCCAGTGTGTGTGAGG-------TGGTGGATCTC----------------TTACCCTGTCTCCTTCTCCC--------------TTCCTCTTGTTAAGATGTAGTTCCTTCCCTTCCTGATGGCTGT------GACCGCTTTGTGTCTGCTGAGGTGGCGTAG-AACACT-------------GGGGAATCCTG---------------------AGCACTTTACTGCCTGAGCCTTTAAGGAAAGAGTGTTGTgctgagagatgggtggctcagcaatgaggagctgttctgtcctggaggagg-------ttctgagttttgttc----ccaacaacaagtcaggcaga-tcataagtaccaggtgatccagcacctct--------ggcctctgtggatactg-cagccaacaccctcacaaagaaatatgcatccacccaagagtaaaaaaaataaattaattaaatct-----------ttaaaaagaacaaagaAA---------------GAAAAGGCTTGTTGAC---------TCAAACCCCAGAGGACACTTGCACACTAAATATCATTTCGAGTTTATCCCACATCACCTTCCAAATGTGTACAATATAAAACCCAAACACAGAAAGTGTTAATTGGTAGCCATCAGGAAAAA-GGAAGACTCTTAAAAAATAAAAGTTATCCCTTTAAAAACAGAGACACTGTGGAAACCTATCATTTAAAATAATTGTGAAATCATTTCAAGTCCCCACAGCTACAAGCCAGAA-GTGTTAGTTCCCACTAGTGTTT--------------CTC--------------GAGTCTTGCACGTGAACCA-TGC------------------------ACAGCCGTTCTGCTCTTTGTGGAGATCTGTGCTTCTGGAAAGCTGCAGCCTGTCGTCCAAACACCAT------------------TTCAGGTTTGCAATCCTGAGGCTGCACTTTGCTCTTTGATGTTTGAAAAGGAAAAAAAAAATCAGTAAAGCTAACAATTTATGCTGACGATAATTCAACAACACTAGATCTTCAGATTGCAGGCTGTGGCTCCAGCTCCATTGTGG---------AGTAGCCCTGGATGCGCAGCTTCTGTGGATTTCCATAATGGCTTTGCATAATGGATAATTATATAAAGAATGAATCTGCATAATGATGCCAAGTTAAACTTTTAGCATAAGATTGCACACCAATAATTCATAGATGCAGTTAGAATTACCTCTTTGTTCTGAGACTTTCTTTATACTTTTAACTTCC-----TCTGTGTGCAAAGTCTCTACTACTTCACTCTGGCTATTTGTAGTT-----------GTTTGTGTTCAGAACTGTTAATGTCTGCTATTTGAATATAGAAAGCAGGAAAATTTT--AGCATTTTAACACATATATAAGACCAAACAATAGGCCTGATGATACAATGAACTGATATAAAAATAATCCCCCATTCTCAGAGAAAAATGCTTAT----------CAACATGAAATAAGAAAACAAACCAAT-------------------TGAGCATCTTACAAAAGATTTGtttctgttctttcattctctctctttttttttcttttcttctcttCTTGTGGAACTTGATTTTCTGAACATCTGAAAGAGGTAGGATAATAAAAAGTAAGAGACATCAGACTCGATGTCTCCCCTTTATGTCCTGGGTTGGAAAACAAGATTATGG
s HiC_scaffold_1 144172299 2561 + 233722169 TTTAGACAGCTCACTTTGGGTTTAATTATTGGCTAACAAGCCAAAGTGAACCTCTCacacttttttatttatgtttattctctattatttttgtttctttgttttccttttggggACTTCTTGAGCATTAAATTTTTCATAGATCCA-ACTCATCAATAGGATTTTTTAACTGAATCTCTTTGCACAGTTAGAAGTTCTCTATATTGCTTTGTAAATGTGCAAGTTATAATCTAAGGGTGCCACCTTTAACAAGTCAAGTGAAGCACAGAAACCTTATTTCTTTTATGCTGCC-CAATTAAAATGCACTcctcataaatattttttctgaatatatgaGAAAGTGTTTT----GGATAAAGTATTATAGATCTTGTTTAAAttgtaaataagattttaaaaactcaaataaatgaaaac---ttttatttattt-----ttt--------catttttcatctttcttattgttttctgttcccttcttattgttttgtgttgttcTAAGTTCCCTTCATTGTTTAAATTTCTGATAGCCACTCCTTTATATTAGAACAACTGGAGATAGATTCTCTTAGTTTTCTACACCTGAGgttattttgattct-ttccttaTTCCTAACATGAGTTTTCACTTCATACAGAATACTGAGCT--AGTAAAAGATGTCAACAATTATTTAGTATTTAATTAGCCTTAAAAttg--tcataaaataatatttgagaaTCATGTAAAAAG---TCTAGAAATTTTGAAATCCAAGAAAACAGTATTATA--TAATGTTTTTCGTGAGTATTGCTGT-------------GTGTAAGTATTGGTGTTGTAAATTAATAATGTAGTATCAATCAAGATGACAATAAATTTGTTCTGAACTAAGAGATTTAAGGACTTATTTGGCAATGAGAGTACTTTCAGGATTAATGTAGTAAACAAAGTCAAGTATGCATTAGACTATACATGAGCAGTCTCAGGTTTATGGAACAATTtatcatattttcctttcttggtaAACAAGAATATTGCCCTgattattcttttgtattttccct-----aTGGTTAATTATTAGTCAGCattatcattgctgagacataatatcaacactaacaaccaaaaaaggggagttttgttttatgttgttaAGGGATTCAGCTCATGGTCACATGGG--TTCAGGGCAGGAatatcatggc---agccaggaaggagagcaAGGGGATGGTG------CCAGAAAGAGAGATCAGTTACAGAGCCTAGGTCAGTCTCCATGACCCACCAAACACACTCAGAAGT-----GTGCCCCAACCACTCCCTGGGCAGGTCCCACATGGATACAATCAAACCCAAGCCTCATAGGCACTTTTGC-----TCTAAGA--CAAGAAAGTTAAATAGTTGCAACTACCTTCCATGGCCAGCAGAGCCGAGGCAATTTCCTATGTGGTTAAGAACAGTTTGCTGACCTCTCCACCTGACATTTTAAAAGAGTTTTGAATATTAAATGTT-------GTTTGGCCCACTACAGCTTCCATAATTATAATA-ATGTAACTTTAAGACAGAAAATGTTAATTGTTAATTATCAGACACAGTAGAAGact-gtaaaaaaggaaaattattagcTAAATTTCATGTGCACTGCTGAAACCCATTGTTTAAAGTAATTCTGAAAAGAGCTCAAGTCATCACAGGGACAAAGCAGAAAGTCTTATTTCCTGCTAATGTTCTAAATTCCATTGTCCTCTTCTTCTGTGAcaaaagtctttgaaatgactgaGTGCTGGGCCAACACCAACGGGGATATAATGGCAATGCTGCTGTGTGTACACCTTCCAGCTT---------GGCATCCTGTCAGCCAAACACTATAATTCTTTGGGTCCTTGTTTCAGGTTTGTAGTCCTGACACTGCACTTTGCTCTCCAGTGTT----AGGATGAAAAAAGTTCAGTCAAACCGGCAATTTATGCTGATGACATTTCAACAATATTA-AGCTTCAGATTACAAACTCTGGTTCCAGTTCCATGGAGCTACTCTATCAGTAGCTTTCTCTGCAGAGCTGTT-TGCATTTCCATGATGGCTTTACAGAATGGGTAATTATATAAGGAAGGAATCTGCATAATGATGGCAAGTGAAAC--TTACCGTAAGATTACACACCAGTAGTTCAGAGATCCAGGTAAAATT-CCTCTTTGTTCTGAG-TTTTCTTTATAACTTtagctttcatttatttatttcctgtgtCCCCTCAACATCTATCTGGTTAGTGACAGTCTATGCTAAATGGCATGTTTTCAGAACTTTTAATGCCTGTTATTTGAATATTGAAGTCAAgaaaatttttcagtgttttaacaCATGCATAAGACCCAAAAATGGACCTGATGATATGATTAATCCATGCAAAAGTAAT-TCAAATTTTCAGAGCATAATACTTACCCATATAAAGCAAAATGagacaaagcaaaaaaccaataaaaaaaatcagaaacccaCAAGTACTTCACAATagatacatttcttttcttttaagc------------------------------taTGAAACTTGGTTT--------TCTGAAAGAACTAGACT--TTAGAAACAA-ATGCCTTATACATTAAATCTTCCCTTAGTGGACTGAACTAGACCAGAAGATAATGG

a score=24563
s chr3           157026036 2013 + 160039680 TATTGTTAACACTTCTCTTATATTTCATTTTCCCTTAA-AGCTGCTTGAAGAGCAATAA--AGACAATGATCTAT--TGTGCTCTTCTGTGATAAAGT-AGATCAGTGCGAAGTGACAGTTTCATTTAGAAGCTAGTGAGGTAGTATCCAGGATT-TTGTCTTTCTAAGTAGAAATTGGAA-------TATTTACTGGACAAGGCCCAGAGTCACTTCCTGAAATCAAAGTTTAAATTAATCATTCAGAGTCCAACAGCCTGCAAACAATGAGAAAGAAAGACCAGAAATGATGGGCTGGAAGAGTGGCACT---------------GAGGTTGGTTTGTTTGGGCTTTGGTTTTGTTTTCATTTTTATTGACAATA-----------------------------------TTTTACCATCTATA---TTCT---GTATT-GTAGAAGAGTGAGGGG--AAAGTCTATAAATTAATCCCAGAGCATC------CTAGACACAGCCAGTATGGATAAAATGGTACAGACACCACAAG---CAGAAGTCAATG--CAAGAGCATAGCACAAATCTGTGCATCACCATC---------TGTAAACTATCGGACACTAGTTCACTATGCAGCAGAATTCCAGCTTGTTAAAACATCCAGGGATGTTACAGAGAGCATTATCTGCCACATAAACAGCTTTCCCCACCTTCTTTGCAACCGTTACAAAGTGATTTTTTTTTCTCAAAAGGATCAAAATTAGTGAAACATCTCCCAACAAGATGAAATGTTCTGTGACATAGGGAAGAGACTAATTTGACCAGGCCAGCCAAGGAAGTTGAAGCACAGCACTGACTGCCCAGAACGTTTACGTGTAAATCCTGCTTGAGATACGATGACTTAAAATTCTAGATTTCTTATACCTGATGTGTGTGTGTGTAGATATGTGGATGTGTGTGGGTTGGGTATGTAGAGATGAGTGTAAGGGTGAGTATAGAGAGTAGGGTAGATGGAGATGGTTTAGGATATTGTGTGGGTAAGTGGGTGAGTTGAATGGGAATGGTAAGGGGTAGTCgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAACTGAAGCTGTGTTTCATCACAAAGCCTCAGGAGTTTGTAGAGAAGACTCCTTCATAAATTTACCAATCAGTCACAAGTCACATTAAAGTCTTGAAAACTGGTCTTGGTGATGCACAGGACCATAGGA-TCTATCAAACAGATTCTCTT------TTCTAGAGTTTCTACCCTTGCTCTCATCTTTAAGCATTTCTTCCTGCAGCAAGCTTGAGTGCTGTCTGGTGTCGGGGCTTATCTCTGGTCTGGAGTGAAgctttgaagatggatccttcccagacagcaccatagcgttgtcatctggatgatgtattactgcaatgcatcgccagagcTCTCAGATGAGAAGTTGTCTGGGAGGATTGGCCTAAGAAGAAAATTCAATTCAATCCCAAGGCAAAAGAA--AAAAGAAAAAAAGAAA--ATACCGGGGAAGGAAAAACCATCCGGCCACAGCCTCTGCGAGG------------AAGCATCTCATGGAATCCTTTTCTGTTTTTCCTTCC-TGGCATGTTAAGGGATAATTATGGATTTTAATCACTCAGCTGAAAAGTAAAATATTTTTTCAGACCTCTGCTTATAACTAAATGAAGGCCTGATACATATTTGGGGCACTGTTTTGATTTAG-------AGATG-TACAAGCAATTTTACCTATTTAACACATAAACCTATATTCAGCAGTTGCCCAGCAGATTACTGTATTAAAATATGATAGGCTGAACAATCTGAA----AATTTTTAAAGTAA--------ATGGCA------AAATAATCAGACATAAGTAAAGAGAGATTGTGGATGACTAAT--GTGGTCTGCCAGCCACGAAC----CAATCACCTCCTTCCAAACAGTTCCTGATCATCCTGAACTG---TCAGGAATGATCGATCGGTAACTCCTGTTGCTTGTGAAAATTTTTTTCCGATGCCTCTGATATATTAAAAAGCAGAGAGAAT-TAATTTCAGCCTAATACAAATATAGT-------GTAATGATTTCCATGTAGTTTTCAGGTTTTGTGACAAAGAC
s HiC_scaffold_1 144176285 1899 + 233722169 TATTACTAAAATGtaacttatgttttatttttatgcaataattgtcttaagaaaaataataaggtaGTGAAAAATGCTGTGGCCTTACTTGATAAAATCATGTTAATGTTGTGTGACGTTTACATTTCTAAAGTGGTgggg----atttttgtttattttctttctacacAGAACGTGGAGGAGGGGTTATTTAATGAGCAATGACCACAATga-ttccaaaaataaaagtttgaattatttattcAGATTGCAATAAACTGTGAGTaaagagaaaaggacaaaaaacacaATGTATTGGCAGAAgggtaattttttttcattttaagaaactaTTTT-------CTCTAGTTCCATTATGAGTTTTAGGGGGAATACCCATAAAACTAAAGAACAACAATGAAAAGAACCTTTTCCTCAACTATAGATTCCTAAGGGATTAGCATCAGAGTAAAGGATCCAAGTCTTTCTGAGATTTCTAAATAATCACTCACCTAAACACAGCCAG----GATAAAAGGATATAAAGGCTACTATGCCTGGAAGACTTTGAATAATAGTGT----CATTCCTGCTTATTATCATTAACATAGAGTATAAATTGTCTAATCTTAGTTCACTATGCAGCCCTGTTTCAAGTTGCTAAAGCTTCCAAATAT-TTGTAGAGAATATTTTCTATGAGA-AGACAGCACTTTCACCCTCAGTGAAAAATGTTCCAAAAAGAATTTTGT----CAAAAGGGTCAGGATTCATGAAATGTCTTCCAGCACAATGAAAATGTCTCAGGAAATGCTGAGAGACTAATTTTACCAAACT-GACAAAAAGGTTAAACTGCAACATTTATGGCACATAAACTTGATATGTAAACTTTGCCCAAAAGTTTAAgacttaaaaatctaaaatttttattcttt----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgcccCACTAAGATTAAATTTCATTGTACA-CCTGAGACATGTCTAAAGAATATTT-TGCATGCTTGTACAAATTAATGGCAAGCCAtat-aaaatcttgaaaat--gtctttaaaatataaaagattatagaaattcattaaaataaatctttggcagaattctcatttttttctctttttccttgtaGTTTAACGTTTCCTTTTGCCTTGCTCTTGAATACAGCCCAGTAGCAGTCACAGTTTCTGTGCTGTAATGAAACTCTGAAGATGCAGCCTTCGCAT---GCATCATAGAACTGTCATTCTGACGATGTATGACAGTGATACATCTTCGGGGCTCTCAAATGAGGAGCTGTCTGGGAAGAATGGGCTGAGCAATGAATTCAATTCAATTACAGGACAAAAGAACcagcagaagagaagaaaagatgtcTCAGAATGAG---------------ATTCTCTGCAAAGTTGATGATAGCTGAGTCTTCCATGGAAGcatatttaatatttccttttgtgACACAAGCAGGAA-AGTTGTggattttaaaca-------gaaatttaaaatgccTTTGT-GTCCTCTGCCTTTCATTGTGTAGAGGGTTGGTTTGTCTTAGGAGC-------TGATTTGGGGGAAGCAGATGAGACTAGTGTTATAATATATTTAACTTATAAACCTTCAGTAAATAGTGAACCTACAGATTAAATTACTAAAACATAA-----TGATCAATGGGAATGTTAACTTTCCAAATAAAATCATTGATGGCGTTGTTTTAAGATTCATTCATAAGTGAAAAGGAAGAGTGGTCATCTAAGAAGTGATTGTCAGGCAACAAATGAGAGAACCATCTCTTCTGAGCCGCTTCTTGACTATAATTTATTGATCTCTGTAGCGATCAATCAG----TCCTATTGCTAGTACAACTTTTTCTTGAGTATCTCTTATCTATGAGGACACAGAAAGGCTGTTATTTCTTAATGGTGCAAAAACATTCACAGCACAAATCTTTTCAAGATATTCTGCAAGTTTTG---CAAAGAC

a score=24705
s chr3           157028671  940 + 160039680 AAAGTGCATG--CTTTGCTCCCAACTCATGTCCCTGGGGTATC-----------ACTGGGTCT--CACCTGCCAGTGTCCTGCTCAGATGACTCTCCACCT--------------GTCTGTGATGGGAGGTGCAGTCTTCCGAAGACAAGACCTTTTACTTTT---GTATACACCCCTTGA-------------------TGCAGCCATCACTTCTT----------CTGAACAT--------TCCAAAATGCTAACTGGAACAAAAGGAAGAAAGCTGACCAC-CATAGTT---AGAGACCCAGGGGAAA-----TGTCTCCAGCCATCCTCACATCTGTGAGAGTGGATATGTGCAGTTACAAGCAGACTTGCTCACT--------GTAAGACAAATTCTCAGCCAAATACAATTTGTTCTTTTACCTAAAGAAAGGGAAGTTTGGAATGTTTATCTGGTACCTCTGTTCCACCTTTAACGTCATGTTGAAAGTC-TGGAAGTTTTCTTCCATGAACTATGTCAGGTCTATGT----AGATGTGGCAG----CTGTAACTGTAAAGGT-GACATGAAACTCTGACATGAATAGTTTAGTAACAGAATCCTATCTCAACTCTCACTGGGCTTCAGTTTATAAAT-TGTGTTCTCTGGGATTCCTTCTTACAGATGGAGG--TAATCAGATGTGAGGGGGTTGAATAGAGTGTGATTTCTACAAACCC-ACAAAATTGAAGGACACATGTTGAGCTTGTTAAGACCCTGACATAATCATCTTTAATCATGGTGTCTAGACTAAACATAAAGCA-----GGATTATGATGCAATTCAGATTGTCCTTCAACGTCAGCTTTCTTGAAGATGGGTTTTCACATTCATTATTGAAACATTTTTATTTTATTTATATCCCCAAACAGT-----CACAGATCTGAAATGTACCACAAAAAGGTGATACTGAAGTTACATCTATGACAAATTCTAGAAACAAAGGGGAAAATAAGGTTCCTAG---ATAGAGGCAGG-----TGTTAGCATCCCAGAGCAGAGGC
s HiC_scaffold_1 144179899 1028 + 233722169 AAACTGCATGTGCTTTATGCCCAATTCATCACCCCAGG-TGTCTGCTGCTGCTGACTGGGACTGTCACCTGGCAGTTTATGCCTCAAAGGAGTCCCCATCCTTTGCTCTCCTGTGGTCTGTGACAGGAGGTGCAGTCTTCGGAGAAGTCAGCCTTCCTCTTCCCAGGTGTTCAGCTCTGTAGCCGTCGCAAATTGCAAActgctcccatcacagctctgaAATGTTGCTGAGCATATGTTGGATCCACAAAGTTAATCAGGAAGAATGGAAAAAGTC--ATCACATGTAGTTTACAGatagttaagggaaaaataatgcCTCTGATCAT----GCACCTGTTGAATCTGATTTGTGC--TTGCAA-TATATATGCTCACTTACCCTGAATATGAAAAATGCACAGTCATATTTGATTTGAGCTTATAACTCAAAGAAGAG--------------TGTCTGATGAATTTATTAGCACAGTAAATTTGTGTTAAAATTCGCCTATGTTGCCTT---TGAAAAGTCCTGGGTCCATATCTACAGCTCAGGAAGTAATCTAAAAATATTGAGGTAGAATTAAAACTCTGACCTATATAGTTTGGTAATAGAATTATATCTCAAACTTTATTTGACTTCAGTTTGCAAATCTGTCCTCTGTGGGATTTCTTCCTACAGATGGAGGGGTAATCAGATGGAAGGGGGTTGAATAGAAAATGATTTCTACAAACCCCACTAAATTGAAGGACACATGTTGAGCTTGT-AAGGCCCTGACATAATCATCGTTAATCATGATGTCTAGACTGAACAGCAAGCATGCCTAGATTAAGATGCAATTCAGATTGTCTTTCAACATCAGATTTCTTGTGCgctgattttcaatttcattattttaaaattattcttcctTTTATATCTCTCATTTATGTGTCTATGAGCTTAAAGTTTACTTGTGAAAGGTGAAACTGAAGAAACAGTAACATCCCATTCTCAGAAAACAAGGAAAGATA--GATACTAGAACATCAGGAAAGGTAATTTGTTATCAATCCAGAGCAGAAGC

a score=51622
s chr3           157030893 3277 + 160039680 TTGTATATCTCTTTGTAAATCAAGGATAATGTTGTCTGTGAAGTAAATTCCTTTCC-CTGCCTGCCTTATTAAT--AGTTTCTCTGGCTGAAGCTGCCAAGTCCCCAGTCTCTGTATGATTCTGGCTTCAGCAGTAAGTTGTGTAGTACACAGG------------GAAGCAGAGACCTGCATCACTGAAGATATTGTCTGTTCTGTAGTTGTAAAAATAGTTTGGTGACCTGCCTTGCAGAAAACAAAAAAGACCACACCCCTGCTTTCAGGGTGTTTCCTTCTAGGTTTTATGAATTACTTGAACTCTTGCTGCATCTGACAAGGCCAGTATTTGG----ATGGCTAGAATTGCCACAATATTTTGTA-AATTTCAGCAAAGATCTGCTTCCCTGTGTATTGTACAACAAATCCATTAGATAAGTCAAGATTATTTTATATTG--CCAAGTTCAGCTTAACTGGCAAACCAAATGATAATGACCACGTGACTCTCAAGTTCACTGACACTGAGACTTCATAGTCTCCTGTTATCGTAGTGGTATTTAATATCCCTCAAGTTTTC-TCCATCCTTATG-CTGTGGATAC----------------GTTTTTATTATATAATTCTGAAGGGATACATCCATGATTTTATTTTTCTATTGATACATAAAATGTGTCTCTGGACCTCTGTCTAGGAACAGAGCTGTTCTGAGCCAATTTATGTAGCCA-CTTATGAGTGAGGCAGGATTTTTTTTTCTTGGAGAAGGAGCTGAGAGCTAGCACATTTGCCCAGGAGGCCTGTCG-CCTCCACTGAGTGACAGCCACCAAAGCAGCTCTGGGCTGAACAGTTTCTGCAAAGTAAGATAAAAGTCACTCTTTGATCAACACCCACTGGCTAGAGAAAGCACAAGAAACAAACAGTGGGGGAAAAAACTGTCAAATAAAATCAATAGGGTCTCTGCCTGGGATTTGAGAAGTCAAACAATGGGAAAATGTGTGATTTAATAGTATTGATCTTCAGTGATGTCCTCCGCAAAGCTGCTCTCAACCTTCGAAGGAGCTCGCTGTGTTAAGTGTTCATCACTCACAGCTCTGTAAGTCTGATACTCCCCTTGATGTGTTCAAATTATACTGCAGCCTAGCCCATAAGGAACACAGTTTCCATGCTCTGGAGGAAAAATAAGTAAACTGTATGGATAACTCTGAAATGGCAAATTAAACATGGCAGGTTTGGGACTGCTTGCTACTGACCCCAGAGTAGAGTCTGCCTCTGACTGAAGACAA-ACAAAACTGAACCTGAGCTCTGCACTTAGGCGGGTAATGCTTCCTGCTcaggatgcaggatgcagggtgcaggatgcaggatgcaggatgcaggatgcagggtacagtgtgcaggatgcagggtgcagggtgcagggtgcagggtgcaCTGCTTCTGCTGCCCTGATAAAAGATGAACACTAAAAACAAGAATGAAACAAAAGTAGATAGATTTATACCAAATA--------TATTCTCACACCTAAAACAAAGAAATAAAACTATTTCAAAGGTAACCTATATCCCAATGTCCATTAATTCTGTGACTCCAGTCATGATA-TAATTCACACTATAAATATAACATTGCT---TTTCATTGCATTTTCTT-AAATATAGAAACTTGGATTTATATTTATGTTTTGTGCACATATACTCAGAG-----GCATAAACATTTAAAGAAATCTGAGGTG----TAGAATGCATAAACTTT------TTGTAAAATAC-ACAACTAAGTAGCATTTCATTTCCTGGAACATTCAGT---AGCTCAA-TATGAATTCAGCTCG---------TCCATGGAGCACAGAGTGATA-CAATGG-GTATTGTCCA--------------TTTTATCTGGAAATG-TAATATTTGTGTAATATTTGAAATATTTGAGAGTCAATTCACAAAGGACACTCAGAAGTCAG-------AAATTTTTGATGAGTGTGT--------TGTTTGAATCACTGGTAGATGCT----AAGCATGAACA---------GGTGGAAGACT-----GTGCATCTTTGTGCATTGCACTGTAGAGTGTTCTGGACTC----------TGAGAAAAAAGCACTGAGATACTGTAGG-GCACATAGACAGCACAACCA-TGGTCTATACCAAACACTGAGCAG------------------------AGGTGAGGTTGG-----------AGACTCCATAACACAAAGCAGAAGCTAGGAATTTCTACCCAG---GACAGCTACTTCAGAAATAGGGGCCAGCCTGAGACAAGGGAGTAGGAAAGCCTATCAG-------AGGTCTTGGTGGAGGGCAGGgtgtgtgtgtgtgtgtgtgttcatgtgtgtgtgcatgtgtgtgtatacatggatgtgcatgtgtaaatgtgtgtatatgtgtatatatatatatatgtgtgtgtctgtgtgtattcatgtgtatgtgtgtatatgaggtgtgtgtgtgtaggtgtgtgtgCACGCACACACACGTGCATGCTCACGCAAATGCAGGCAGGGTGTGGAGCACAGAAAGTAAGACACGGGGCTCATGACTAATTATGTGGCATGCCAGAGCCCTATGCCAAGGGAAAAGAGCAGACAGTAAAGGTAATTACCAATGACTTATACCACAGGTTGGTACACAAGTATGTGCGGGTTTCTACTTAACTCACAAAGAAACCATATTTATAA--AAATAAGTAAAGATATTAAACTCAGAAACTATGTAGTAACTGTGTAAATTTTGCATAAGTTTTTCATTGAGAATATATTGTATTCGGCATTTTAGCAGAGATTAAATCAATTAAACATGTGTCTACTTTGACATTT-TAATACCAAGATCAGGGAAAGCTGTTCCCAAAGCTAAATATCCCCTGCATTCTGCCTCAGAGGACTCTGTCCCTGATGCTG-GGTCACAAACAAAATTCTTTTGCTATTTTTGGTTGTGGAAGCTTATGTCAGTGTTGGTGGGGCATAAGGAAACTACTGTTCTTATTTTAAACA-----AGCCTGGTTGGTTTTCAGAAAAGGTAGACCACCATGATCCAATTGTCCTATTGGCAAA-AACTTCCTCCCCACTGCT--TCCACTCTCCATGTACAGTATCTCTGTTCTATTTTCTTCAGATAA-TTTTCTTTGATCAGTCTCTAAATGCCTTTCTTTTCTTCTCCAGCATGAATTGTAAGAAGCATATCACCACCCTTTGCAGAGCTCAG---AACTGTGTATCAGAGCTTTAGGCACACTGTCCATTTTTCATCCCGAAGTGAAATCGTGTTTGATTTCATTTGTTTTAAATTATGTCACCACATGAGCATCAAATAGCACATAGA-----TTTTTTTCTTTCTGTAAATGATAATAAAATATGTTAAGAGGTGGAAAATATATTTCATTTGC---------CTACTTAAGAAACAGAGATACC
s HiC_scaffold_1 144181854 3036 + 233722169 ttGTAGATCTTTG---GAATCAACAA-ACTACAACCTGTGGGATAAA--CATTTCTACTGTCTGTTgtataaatgaaattttcctGGCACATACTCCCA-----------CCCGTGTGTTTCTGAATTGTCTAGGCGTGTGTGTACTGCAGTGGCAGAGTTGAGTAGAATTTAAAACCTACACATTGGAAAATATTTGCTTTCCAGCTCTCTACAAAAAAGTTTACTGAC--ACCTAGTGCAGAACTAGAAACATCCCGTCtcatttttcagttcattttcttct---ctgtatg-------------------GCACCATGGAAGCCCAATATCTGATTTCATGGTTAG---TACTTCAATGTATTGTGTAATTCCTACAGAAAAC-----CCCTGCTTATTcttcaatgcattt-ttaaatggactaaaattattttttatttgtccaATTTCATGTGAACTAG-----------ATGGCTATTAAATTTCCTCCGAATTATCAAAGTTTAAAACCTCATCTTCTCATATTGTTATAA--GTATTCG-TGTCACACAATTTTCCCTACATCTTTACATCTGTACACATCTGTATTCagattaattttttcattatggAATTCTGAAGGGATATATCCTTGACTGTATTTTTCTATTGATAGAAAACATGTGTCTTTGGACTTCTCTCTAGAAAGGAAGCTGCTTTGAGCCAATTTACGTAGACAGTTTTTGAGAGAGGCAGGatttcttttcct-ggaaaaaGAGCTAGGATCTGGTACACTCATCCAGGCAGCCTGGCGGCCTCCTTTGAGTAACAGCCACGGGAGCAGCTCTGGGCTGAATAGCTCTTGCAAAGTGAGATGAAAGGTGCTGTTTGATCATAGTCCAATGGGTAGACAAAGCACAAGAAACAAACAGTGGGGG-GAAAATTgccaaataaaatcaataaggtCTCTGTCTGGGATCTG-GAAGTCAAACAATGGGAAAATGTGTGATTTAATAGTATTGATCTTCAGAGGCGTCCACAGCCCATC--CTCATATCCTTAGCGGGAACTCATTGTGTTGAATGTTGATCATCCACTGTCTCACAAGTCCAATCCTTTCTTTGATGTTTTCAAATCATACTGCAATCTAAACCATCATAAGCACTGCCTCCATGATTTTGAGCTGAAATACGTAAACtggaaagataaattttaaatgccAGATTGAA-ATGACAAAGCTGGAGTTGCTCAC-GCCGACCCTGACCAAGAGTTTGTCATTGATGGAGGAGGATGTAAGACTTGA--------TTCCACTGAAA----------TTCCCAGCCATCGT---GGATAC---------------------------------------------------------------------------------------TCTTCTGCTTTC------AAGGGTGCAGGCAAACAGAAAG-----CACAAAGAATGATAGATTTACATCCAATATTGTACTGTGTTCTCACCTCTAGAATGATGGAGTAAAATCATCTGTTAGCTACTGCACACCCCTAAGtcctttaattttgtgattcTAATCATAACCTTAAttccataaatgaaataaacagtgCTGTATTTCATTATGGTCCCTTAAAATATAGATATACCCATTTAAATATAAGtacc-tgcacacaca--cagagtcacaaCATAAGCA-TTAAGAAAATTCaagatgcatttaaaa---atgagCTTGCTAAAatcatgaaagacaaaaattaagtGATA---AGCTTCCTGTGAGAGTCAGTTGCAGCTCAGTTAGGAACTAAAATCTGATCTTTTCTACATGTAAAGCAAAGGAGTATCAGTGGCTTACTGTCTGAGAGAGGTGAATTTCTCCATCAGGAGGAGCTGATAT----------TTTCAGAGCTTAGAAAGGCAGTTTACTTCTG---TTCAGAAATAAGTAACATCAAACGTTTAAGGGGGCTGTAATGGTTCTTTTTGTATTAATGATTGATGTTTGTCAAAGGTAAACAATTAGTAAGGAAGGGAGGCTAGTAAGTCCATGCTTGT-TATTTTATAATCAAAAATACTAACTTAGTaagtaaagtataaataaagtatCGTGATGCTCAAGGAGAAAATGATCAACACAACCAGTTGTCTCTTCCAACAGCTGTATAGCCAACTCCTGTTCAAAACCTTAAAAGGTGAGTTTGGACCTATTGGTCAgattccatgaaacagatcc-aagcTAGATGGTCCTACTCAAGGTGACAGTGGCAGCCGGAGGGTGGAAAAGCC-AAGAAAATGGAA-ACGAAGGCAAATGAGGGGGCCCAGGTTGTAGGGAAAGGCAGAGC-------------------------------------------TACAGAGA-----AAGCTCAAACCTAATCATATGAGaaac----------------------tgccctctca-gggcaTGTATGT--------------------------------------CACACGTG-------------------------------------------------------------------GGTAGTATGTAAGGGCTTTAAG-----------------------AATGTTATC-----TTTCCTGTTCTACAGT------CACATATATATGCTA--TTATTATcatatcaggaaaaaaacaaactttagatgaattaaacaaaaatattaaattaagaaGCACAGT-TTACCTGTATGCAGT-----TGAG---TCCACTGTGATAACATCCCACTTATTGGTTTACTCATGATTCGATTAGGTAAATG-GTGATTCCATGAATACTTATGATAGTGATAATGGGGAAGTTTCTTCCTCAATTAAAAATCTCCCTCTATGTAGCACCAGGTGATTCCAATGCAGATGTTGTGATTACAGACATAA--------------ATGCTTGTAAATGTGTATTGC------GATGGGCCAGACTGAAAAGA---TTCTTAGTTTAAGTAAACACAACCTAATTGGTTTCTAGATAAACAAAAGTGCTCTGATCTTGTTATAATATTTACAAAGAGCCTTTTTCCTAGTTTTGCTCCATTCTCCTTGTTCAATATTTCAGTTCTATTTTCTTtagataatttttctttgatCAATGTCTAAATGGCTTT-TTTGCTCCTCTTTTGTGGATTCTAAGAAGCACATTATAATCTTTCACAGAACTCAGTCCCTCTGCGTATTAGAGCTTCAGATGCACTGTCCATTTTTCATGCCAAAGTAAAATTGtatttgatttcatttgttttaaattatgcCATCATGTGAGCACCAGAGAGCCCGtggaccttttttatttttttctggaaatgataATGAAACTTTTCTAAAGGCATCAAATGTATTCCTTTGGTGCTagccagcttttaaaaaaaaaaaaatgcc

a score=24387
s chr3           157035563 855 + 160039680 CAGACCTAGGAGTCGTGAACAGTCTTAAGAGCATTGCGGGAAGACTCATTGTGGCATTTAAATTTGGCTCTGAA------TAATAACACTGGACT--------TTTTATCAACCCTCCATACCACCTGCTAACCTTTGTTAACTATCATTTTCCTAGTCAAATCTAGAG--TGACAACAAACAGTGA--------CAGGAAGCAGTCCAGGACTCTTTTGTGGACTTGAGAAC------CATCATTCCTGATACACTGATTCTATTATTTCATAAAGATTAT-TAAGAAATT-TCTCTAGGAAATTGTTTGCTTTCAGAGGAAACAGTAAGTGACTCCGACATTTA--TTTCTGTTTTCCTATCGATTCTGAGCTATACACT-AGGTGGGTTTAATGGAAAAAGGTTGACTGATCTGCTTTCTGCG---TCTGATCCCATCCAGTAAATATCTGCCCACTGAGGAAATGCTCCATCCTCTAA-----GTTGTTGCTAAGATTTATGTGCCTGACTTCTGAATAGCTCTCTTCCAGAGTATCTATTTGTCACCGAGTCAATTGCCGCTTCCTATGATAAAAAGCTTAGGTATTTCACTGCTCACTGGAGGAATTAGTCTTAAGAAAGGAC-CCTCCCTCCCATGCTCAATTTAATA-CCATGTGGGAGCAGGCGATGAGGCTGGGAACTCCACACCAGCTGTAGCCTTTATTTTCAGAA----GTTGAAAACTCCTGCGACCCTACAATCAGATCAGC--TCTCTGTAATTGAGACAATGGCTATCCCATTCCCCATGACTAATATCCAGGCTGCCAGAAACACATGTGGGAGGCGGAACTTGCCGTGTAATTAAAGGGGAAATGGAGCTTTTGGAAGCAGTTACAGATTTAATTCTGGGAAACTTA
s HiC_scaffold_1 144185470 885 + 233722169 CAAAACCAGGAGgcttaagtaaatttaaaaaatcttctggTGGATTTATTCTGTCCTCCAAATTTGAACTTGAAGAGACCTAAAAGTTAGGAAGTAGTTATAATTTTTCCAACTCTCTGTTTCTCCCACTAACACATTTTAGCCCTC-------TAATCAGACATAAAAATGGAGAATGAAGGGTGGAATATGGGTAGGAAAGGTTGTAAGAATCTATTGCAAAAATCAGAGCATATTTCCTCACTTCAGTTATGCTATTTCTATTATTATATGAAGATGATATAAGGAATTGTCACCAGATTATTCTTTTCACTCTGAAGAGgcactaaaatatttttgcatttacatTTGTGTTTCCATATTGATTCTGTTCTATATACTGAGATGGATTTAATGGAAGAATATTGACTGATCTGCATATCAGGATATCTGATCCTTTCTAGTAAATACCTATACA----GGAAGTACTTCATCTTCTCATTGTTGTTGTTAATGAGATTTATATGACTGGCTTCAGAATAGCTCTCCTTTAGTGTGTCTATTCCTCACTAAGTCAATTGCCCCTTCATATGCTAAAGAGCTGATGTATTATACTA-TCACTAAAGGAAATAGTCTTAAGGAATATTACCTCCCTCCTACACTCAATTTAATAGTCATTTGCAAGCCAGTAATGCAACTAAATCATTTACACTAGATATATCCTTTATTTTCAGAAGAGGGCTAAATTCTTCAGTGACCCTTAGAATAGATAAGCTTTCTCTATAATTGAAACTACCAGTATTCCTTTTTTAATGGCTAACATCCAGCCTGCCTGAAAGACGTTTAAGAGAAGGAATATG-CATGTGACTAAAGGAAGCTCAGAG--------AGCacacttaaatttcattttgcaaaattta

a score=21120
s chr3           157036818 1820 + 160039680 AAAGGCTGAACCAAACGTCCTTCAAGGCTCTAGTCAGTAG--TGAAATATCATTCTACCAACTAGTAATAAAACAGGTTTTTTTTCAAAAAGTCAAACATTAATCTGTATTAATATTTGAGCCACTGCATTTAAACAGGGATATCTGTGTGACCCTGGCTTTGAGGATATTAGTTGGAGTCTCGTGGGACCCAGCAACATGTTCACAAGCGAGGACAGTGACTGTTGTCTTCCAGAATCAATCAGGGGTCAGTTGTTAAATGCC---AAGaattaatt-----------ttatgttttgaaataaatcattataaatcattataat-agaataaaagaatataaaggatataaatatttatatattcataaatacatatgatataaatataGAGGATAAAAGAACCACTATACACCTCTCTTATTTTTCCTAATT---------AAAGATGAATGGACCAGCATTTGCCATTTGCCATACTAAATCTGGGAC-TATATTGTGGATTATAGGGTGTTTTTTTTTTTTTTGCATA--TTGTCCAGTGATTTAGAAGACAGTCAGCAAACCATATCTTGCAGGCTCTACGAGAAAGTCCCACTGCTGGGTGCCCATGCCCTG--------TTCCACAAAGGGGCATTTAT-----GACCAGTGTCAGATGTTCCC----------TCTACCTGTTCTCGCTGTACT-GAATCAAGTAGATATGGTGGAGACTATACAGCCTGCAAA---TTCAAAATGTAATATATTTATTTTCTTGCTCTTCACGAAAAGTCTA---GGTCCTAATTTTAAGGATTTTGATAAAATATGAGACTGTGAAGCACCTACTAAAATTT---GTACCTAATGAATTTGGGTATGTGGTGTT--------TATTTTTATACTTTCTTTTTTTA----CACAGAGTATCTTGTCACTGCCAATAATAAAATATGTACAGCTCATTTTCAGGAACAATATACTGACATCTT-CTTTAGCCACCTGGAACATCT----------TTCTTTTTAGAGAGAGAAATTTAAGGTCAAAG-----ACTTACAGATGGATCCTAAGCCTTAACAATATGAAGTT-GTGTTCTTAAACTTCATGCTAGAGTTTGAGAATAGAAAAAAAAAAGTAATAAGTAACATTCGCATGTACCCTGTCATACTTTGACAGCATTCGATCTATAGTTGTAAATGTACACCATCATCACTTTCT--TGATAACTAATCTTTAAATTGCATAAACCAGCAGTAAAAGTGGATTTTAGAATTAAGCA-GAGAGACATTTAAGC------TATGCCAAAC-AT-TTTCCAACTTTTAACAGAAAAGATACTCATTTTATACTGAATTCCCAGTGTAGAGG--------AAGGAACACTAGAGTCTAAATTAGTC--TTCAGTTG-CTGACTGAAGGAGAAC---TCAATTTGTGAGCTTTACATAGTGATTAGGTAGAGGAGAATCTCAGCCATGAGACCCATTTCAAGCCAAAGGGGCAATCAAAATGGCAGCAGAAATCTGC---TTCCAGCT-----TCAGCCACGGCAACATAGAGAGTAAAGGGACAGAGCTGACCCACTGAGGGCCCCATTGCAGGTTATAATGATC-TAATAGCAGGACCCAAAAGTGCAACAATGCCATTTCAAGGCACTCTATAAATAAGATTCTGTTTCCAGCATGGAAGAAACTATTTTTAAAAACAAGATACTGACAGACACTTTCATATTCAAAGTACTCAGCGTTAGTTAAAATTAA-ATCCTTTATTAACAAAGAGGCTGAT---GTTGTGAAAACTCTAGCTGGAATTTTCCTC--AAGCCTTTCTGGAAAATCGCGGAGCACTGAAGAGTCCTCAA--------ATCAAAGTGTACCTGCAGGACAGAAGCTGGCACCACTGGGGCTGCCCAGGCTGGCCACCCACTGTC
s HiC_scaffold_1 144189010 1803 + 233722169 aaAGTTTGGACTAAAAGTCCTCAAAGGTCCTAG-CAGTATGTTGACATATACTTTTATGCTGTAATAATGAAAAAG--TTTCCttctgaatataaaa---taattttgaactatGTCTGTG-------ATCCATACAG---CTTCTGTT--------GTTTAGTGGgtagtggtgacagt------ggacagaGC-------CCAAATTTGAGATCACCAACTGAATCCCATCAGAAACAATC------------TCTAACATCTGTAACCATTAATTCCTCATGTTCCTAATGTTTTAATACAAAGGAGAACACACGGTGGAAATCAGAATAAAAGGAAACTCTTtaaattaatctttatttttttaaaaa----------------------------agagtca--gCACTTGtctcttagttctttttatttgcCAAGTAGAAGGATCATGGGCAGGAATTGGCCGTTTTGC-TACTAGGACACAGACATATATGGAGATACATGG------TTATATGACTTTGCAGAAGTAATCCAGTAGTTTAGAGCAGGATCAGAAAACTA--------AGATTTTCTGTCCAAATC-----------------TACCCTGGCATCTACTTTCATAAACAAAGCTTTATTAGAAGATCCTTGCCTATTGTTTGCAATTTTGATGGCTACTT--TCACAATGCAATAGAATTGAGTAAGTACAATAGAGCTCACATGatctacaaaattttaaatacgtactgtgtggattttttt------ctagaaaaatttgccttctcttatttttaaagatagagGTGAAAGATAAGCATA------ACATGGCATAATTTTAAGTGCCC--TGGATATGTTTCTACGGTGGTGCCTTGTGTGTTTTTAAGCCTGTACTGCTTAGTAGTATTGATAATGTTGCTTGGGGCACTAGC----TATGTGCTAC--ATCTGCCA-AACACTATAGTCCCATGTCATTTTAACTACAACAAACATGTAATTATCATCTTTCCTTTACAGAACTAGAATTAAAGTTGAAGTTCAGAGTAGCATTTGGACCCTgaaatttctaaatataaatttcatgCTTTTAAACTTCATGTTATGTTCTGACATTAGCAAAAGTAA--TAACAAGTAGGGTCTAAATGCCATCTGTCCAAGCTTGACATCTTTGACTCTCTGGATATGGAACTACCCCTTCATCACTTTTCAATGATAATTAATCCTTAGGTCACCAAAGCCACCAGTGAAAGTGGACAGTAAAATGAGCCATAAGGGAAGTCTAAGTAGCTGTTAAGTTAGATTATATTTCCAATTTTGGACAGAAAAGATA---GGTTCATGC--AATCTACAGTGTAGAGGTGATGTTGGAATGATGCAAGGAGAGAGATCTACCACTTCAATTATCTGACAGAAGAAGGACGACTCAATTCATAAGCCCTAAGTAGCAAGCAGTTAAGTGAGAAACCCAAGCATGAGATCT-TTTCAGGGCAGACAGATAATCAGAGAGCCACCAGGGCCATGCAGTTGCCAGCTGATCATCAGTCACT-CTACACAGACATCCTCAGTAT-GATCTGAGCCCTTTGAGATGCCTTTGCAGGTTGTTAGGACCCTGCTGACA--ATCTCTGAGTACAACAATGCCACAACAAGGGTCTCTATAAATAAAGTTCTGTTTCCAGCCTAGATGGAACTATTTTTACAAATACCATAC-GAAAGACACTTTCGTTTTCAACATATTCAGCATTAGTTAAAATTAAGATACTTTATTAACAAAGAGCCCGATCTGGTTATGAAAATTTTAGTTGAATTTTTTCTCTTGGGCTGCCTTTGAAAAT-GCCGATGACAGATGAATTATAAATGATCTATATCGGGATCTTACTAAACATAACAAGTT------ACTAGCGTTGCCCAGATT--TTACGCACTGTC

a score=56062
s chr3           157039156 3595 + 160039680 [encoded data, 4128 characters]
s HiC_scaffold_1 144192611 3958 + 233722169 [encoded data, 4128 characters]

a score=19725
s chr3           157050891 711 + 160039680 CTGTATCTGT-GGATTAGCAGGAC-------------TCAGACAGAGGGGCTCAGAAATGGCTTTCTCCTTGCTCCAAAACTAGATAGGA--GGAAAAAACCCACACTGTATGATTACTGACAAAAAATATAAAAGAATCACTCAGAGTCTGGGTTTCA-----------TAAGGAACAAAAACACATTCCAGCTAACGCCTGACAGAAACAGCTGTAGTTCAATAAAGATCCTGTAAGTACTATCTACGTCTCCAAAATACCAACTCCAGGAACCCACAGCAACAG-ACGTTAGGCTCAAACAT-------------CAGTACTCAGATGCTGTCTTCGATAACTTCTTCAGCACATGTCCACTTGCTGATGACAGCACTTCTTTTACTTTTTTTTTTTTAATTGCAATGGTGACAGACACAAAAGCAAATGCCATTTAT---TAGATGAGGAGTT--TGAATAGATAGTGTCAGCTCTCCTATTCTTGTAGTGAGATCAGAGATACTGGCCTCCTTTGGCATA----------TTCTCCAAAGCTTC---AAAACTATTA-AAACTGTACTGT-ACCCCATACTAA-TAAGGGATGCATCAGAAAG-----------------GATGAACTCTGA-CCAGTATAGTATCCCACAAGAG-ACAATACCAATGA-------------CAACAGAACCTGAACTAAGGAACT---CAGACCATGGGCTCTAGAAGTTACATTTTGAGAAATCCTGAACAAATGACCATTGTGTTGTA-AAAGACATTTTTTATTACTTTTCAgtgtgttt
s HiC_scaffold_1 144205691 802 + 233722169 CTGTATTTTTAGGATGAGTAAGACAAAATAGTCAAAATCAAGGAGGAGTTCTCAgaa----cttcttcctcttccccactCAACACAAGGCGTGAATAAAACTATACTTTATGATTActtgcaaaatatataaaagaactgCTCAGAGTCTTAGTTtcacagaagaaagataaaagaaggagAAACATTCCAGCTAACATTTGACAGTAACAGCTGTACTTCAATAAGGATCACGTAAGTACTGTCTAAGTTTTCTAAATACTAACTTCAGTAACTCACAGCAGCAGCAATTTATCATCTGACATTCTTCCGAGTTTCCACCCCTGAGAAGCGATCTCTGATGAATTCTTCAGCACATGTCCACTTGCTGAAGATAGCAGTttcgttattttttttttttcaaccaatCTGGTGACAGACGCAAGAACAAATGTCACTTGTACAGAAGTGGGGAGATGCTGAGCAGATAAAGTCAATTCTCCTATCACAGCAGC---AGTGGTGATAGTGACCGTCTTTGGCATAGAATATTATCTTATTCAAGATGTCAGAAAAACTATAAGAAACTGGGCCATAATCCAATAGGGATTAAGAAATttatcagaaaataaagagaagaaaagatgatAAGCTTAGATCCATCAAAGTATTCTGGAAAAGAATCATAAAAACGAAAGCCACCCCTTCCAAAACAGCCCAGTCTATGGATATTTCCAGAGAATGTGCTCTGGAAATAAATTATCCAGAAATTCTAATAAAAGCAATTTTGTATTGTGTTTAaatagtctgttttgtttttcatttagttt

a score=12434
s chr3           157057645 714 + 160039680 tATTAAAGACAATTTTAAAATGTCCCTAAGTAAGGCACACAGAGGCCACGGTGTTCTAATATG--TTGAAAAGaaaatttaaaataggtaaagaagtgagtggatttcctacaggcaatcccccagtagttgtgtttctctacatgaacttatgatacaaataaaacaactgagaattcagg-ttgtattatctaggcagaccatgaagggcagAGTACATCACTCACATAGAGCCCAGGGTCACAAAGCTAATTCAGCAGGACGGTAC----------------CATGAGGCAACAGATACTGGCATGGGTTGTAATTCATGTCGCCTCTATAGAACTTCTAAAGCATGGTTAGCCAAAAATCAATTTGAATA----CTAAAAATGCCCTCCCTGCCAGTGGGACTAACGGGACTGAGGCAGGGGAGCT--ATGTGA--------------------TGAACTCTTCATTCTCACCAACATTTGAAGTCCTAACCCTTCCCATGTAGG--ATGTTAGTGGGTATGCAGTGGTGTCTCTATA-------ATCTTTGTCTGATTAAAATTA--------CCTTTGAAGTGAGTGTGTTTGTGGCTTTCAACAAAGGTACAGTTACACACCCACCTTTCTAATGGAAACACTTGAGTGTTGCTGTC-----AGAAAATTGCCTCATGATGTCCTGTTCTAGTGTCAATGAGCCTACTCTGATACTTTTCTAATTTCCAAAATGTTAT-GTAAATGAAGTGATATAATATGTAGCTCACtgatct
s HiC_scaffold_1 144215225 737 + 233722169 TGTCAAGGTTGGTTTTAAGAGATGCCAAAATAAGAC-------GACCAAAGTAGACTGGCTTggtctgaaaataaaattcatgatagctaatgaaataaatgaatttccTTCATGCAATTctttatgaatattatttttctacattaatttATGGTAAATATTAAGAATCAGAGAAATCAAGATTCTGTTATGTAAACAAATCATGTAGCACAGTGAATATTGTTCAAAGATGGTCCCAGGTAACA---------CAATAGGATCTTACAAACCTTCTGTTGAATCCTGAGGCAACAGATA-----GCTGAGTGTAATTCACATCATGTCTATGGAACCTCTAAAACATGATAAACCAAGAATCCATTAGAATATCTGCTAGAGTT--TCTTCCTCCTTGCAGGACTAAAAGGATTAATAAAGAAGATTTTGATATGAGTTCATGGGAAGGAGTTGTGTGTGTTCTACATGCTCATCAAGATTTGAcactgcaatttttaaaatatagaacatGCTCATGGGAAT--AGTAGT-TATCAAtatgcttttatttgtatttgctgAAGGTTATACATCACTCTTTGTTATGCACAATTATATGACTT--AATAAATGCATAGTCATCTATCTGCTGCAACAATCAGTATACTGAATCATT--TGTCATTCTAGGAAAATCTCACATTTTGTCCTACTCT--TGTAAATGAGTCTCTCCT-------------CTTCCAACATGTGGCAATACATGAACTGATGTATTCTTTAATTCAGTCATTT

a score=34680
s chr3           157067902 2272 + 160039680 AATTTAGATTGTGAAGTTAACTCTTACTTTGTAATCTTACTTCGA------CAAACAGTTTGTTGGTCAACTAATATCTCAGAGGCTTAACTCTT-TCCATCTACAAATTGAGA---GCAACCTGGTAAAAAGCAAAAG---AGTTCTATAGACTCTAAACAGTTATATCTTTTATTGGCAAAGTCATGGTCA---------TTCTGAGGGCAAAC-AGTGATGGAAAATACT---GTCCTAGACAGAACCCACAGGGGGTACAGT-AATTGACATGCATTCTAGATTTGAGAGGCTGTAACTGAA--TTTCCTTAGATTTATTGAGCGAATCCCATTAACTTTCTAACTTCTGGGTCATTGT----ATTTCTGGAAGGATGACAGCATAAAGACAGAGGAAGCCTTGACTTTGGGAAATGCTGTTTAGTGGGAGAATTCCTTGATTCC-----GAACGCCTTCTGTACGCGTTAAAATGTGAATGCATTTCACAGTCATCTAGAGGAGG-----------GGTGAGAG---------GACATCACTCTAAGCACCACAGCTTCTCTGTAGATACTCTGTCAGGACCCCAGCTGCCCAATGACTCTG--CCTTTGTTTGGGTACAAATCTTATTACTGAAGAAAGGAGTCTTGATTTCCAATCTCATTAACTTGGGGATATTTTTCCATCTGTGATTATGACTTTATATTGTTAATCTACTGTTATTTTTAGTCAAACAGAATGTTTTCACTGGAATAATAAAAAAATAAAGATAATTTGGTTTGTTTGCATAACCACTTAACTCTTAG--CTGAGAATCATTAAGCCTCTTCCCTGAGATTCACTGGGTGATTTGCATATAGCACTTACAGAGTGGCTTGCTTGGGAGCTTTGGCAGTTTTGGATAGGGGCTCCTGGTGCTGCTTTTATAGACCTGTGTACTTTCATCAAGCCATCTGTCTGGGAATCATGAG--CAGGGAGATGTTTCCCAGGGAAAAGTCAAGTTTAGTTAGGTAAAGTGTCCAGTTGGTATCTTACACTGTATAAAAATTAGTACACACTAAGCAACACTGGTGAATTCCATCCACATTGTGAGGACGTGGTT-----------CAGGGATGT-------TCTATCTGA-------AGGACTTTGAA-ACCAGAACCAATTAAGGAGAACACATGGGCATTCTGCTCTAGAGC----------------------------CCCCTTTTTCTGCATTTT----------------------------------------------CTGTTGTGTGTAGAATTATCTGGATAGTAATGTCTGGTAGGAACCACTAAGTTTGTTGTTTTCCTTGAATGAAGCCTCTAACGGCAACAATTAAATGTGTGGCCAATTTT----------CTGTTATTGTTGTTATAGCAAAACCATTTGAAAATGGACAATATTTGGACATTTATGGAATTACAAGGGACCAGGCTGGGGAGTATGAATGCAGTGCAGAAAACGATGTGTCGTTCCCAGACGTGAAGAAAGTGAGAGTGATCGTGAACTGTAAGTCT-------CTTTTCTTTATCAC------------CATAACTATTGAAAAA-----TGTCTGAAATTGTTGTGGCTGCTTTATTAGATCAT-----ATATCTGCGTG-CGCGCAC-----GTGCGCGcacgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacGTTTATATGTGTA----CCATGGCCTTAGCAGATCCCAGCAATGGTTTGA--TGATATACAGCCTGA-AACCTTCCAGTATCATGTTCATGCCCAGCACTTCCAGAGGTCTCACCCTTGTCTCTAAAGCAC-TGTGATGCTGACTTAGG---TCTCACTTGTTGGACACCA---------------GCAGAGGTCCAAGGTGCGGCACTTGATCAGACCTGATGGACACAAGTAGGAAGCAATTCACTGAAAGATGAGAGGGGATGGTGAGGCCTATTAAGTTGGATGATTGAATTTC---TAGCTTGGAGACACTGGGAAAATTCGGATCTCATTTCCCCATAAACACTATCATCATGAAGTTAATATGAGCTAGATATTTCACAATGTT-------------GCCCACACCATGACACCACACCCTTTTCAATATGGAAAAAA----------AGACAACTGCTTGGAGTATTCCACAGCAAATATCCTTGACCTGTGAGTAAA-----GTTGTCTTTCTTTCAAAATTGTTTCCAGTATTTGATTTTTTTCAAAGA---------AAATACTTTGGGGATAAGAGTATCTTAC---CCAAAATGTATACAAGCTATATCTTTTATCTGTTTTTATTCCTTTTATATACTTTTCTACATATGGCCTTTGATGTTAATGTGTAGTA---TTGATAAC-CAGATAACATGGAACTGTTATAAATATATCCATAAATACTAATGCCGGTCATCAGCTATTTCATGTGAACATGAGTCTTCCAGTCTCATGAGGCAA
s HiC_scaffold_1 144227985 2430 + 233722169 AGTTTGAGTAGTGgaaataaatattgttttgtgAGCTTACACCCAGATTACCGAAATAGTTATTAGCTGACTACAGT---AGTGGGTTCACTCTCCTCTATCTACCACTTGAGATCGGCTACATAAGTAgaaattaaagtttaattttatgttatttaaacaTTCAAAGTTTTAGTTAGCAAACCCATGGTTGCCTGGAATCTTTAAATGGTAGACTGGCCACAGATAACATGTGGGTTCAGGA---AATCCATGGGGGAAAAAATTAATTGGAAAGGATCTTAGGTTGGCAAAGCC--AAGCGAAGCTTTAGCTTGGTTGATTCACTAAAATCAAATATTCTTATTAGCTTTG----ATTGTTACAACTTCTTGAAAAACTGTCAAGTGATGATACAAAGAACATCATCTTATAGAAAGA--GATGAGGCAGTGAAGCCATTGTTTCCTTTGCAGTTTGCTTTGATACGCACTGAAATGAAATTTTCCCAGGCTGACATCAAGAGGGAGTAGGGTCCCTGGTTGGGAAATTCAGACAGGCACCACCTT--GCACTGCA-TTTCTCTG---ATAATC---AAAAATCCTTCCTTCTCAATGGCTTTGTGCTTTCAATTAAATAACAACTCCATTATTAAGgaacagaatttttatttaaaatctcatTCACT-GGGGATAACCCTTCATCTGTAATTATAACTTGATGCTTTTAATCTATCATCATTTTTAGTGAAACA--ATGTTTTCACTGGAATACTAAAAAAGCTAaggtgaatttttttaaa-aaataattacataactCTGAAGTTTAAAAGTAatgaagaattttcaa-aaattttgttgGATGGATT-TATACAGCTCTTACAGTGTTACTTTCTTGGAAACAGAAGTA------------------TGGCAATGGTTTCTTAGATCTATATATTCTTATCAAGCCATCTGGTTCAAAAACGTGAGTGCAGATAGATTTCTCCAAAAGAAAAGTAACGTTTAGCTGGGTTAAGTGTCAAATTGCTGGCTCGCCTTGTATAAAAGTCAATATGTACCAAGTCATATTAGTGAATTTCATCTACCCTGGTAGAAGGTTGTTGAACTCAATTACAGAAATGTGCAGAACTCTATTTGATGTGTGAAGAGGTTAGAGGACCACAATCAATTAAAAGGAGCACATGTATATCCTGCTCTGGGGAAATGGTTGTTATAATATAACttgttctgcttctgttttttcGTCTTGGAGTTTTCCTGTGAACACACAAGAACAAAGACTTTAATAATTCCCCAGTTTCATCTGGAATTGTTTTGTCAGCAGTATCTAGTAAGAACTCACACGATTGTTGTTTTACTTGAATGAAGCCTCAGGCAGCTACAATTTAacatgctgtttctttcttttttcttcctttcttttttggggtaGCAAAACCATTTGACAGTGGACAGTATTTGGACATCTACGCAATTACAAGGGACCAGGCTGGCGAATATGAATGCAGTGCAGAAAATGATGTGTCCTTTCCAGACGTGAAGAAAGTAAAAATCGTCGTCAACTGTAAGTCTGGGGTTATTTTCCAAGATCATTGGGAAGAAAAgcttaaacaacacaaaacataTTGTGTGAAGCTGGTGATGCTGTTTTCTTAAGAGGTGGACAATTTCTAAATATCACCCACTGACAGTGACAGTGCGTGTGTGGTGAAATATTGAC-------------------------------CAGGTTGTTTTGTGTAACACCAACCATCTCAACTAATGCC-GCAGGCTTTCAAGTTGATGTATAGACTGACAGGCTTCCAATCTCATTCTAGCCTCTGATGTTCCAAAGAATGGTGACACTGTGTCTACAGCAAGCATGGTTCCTCCTCAGTGGCTTTCACCTAGAAGACACCAAAACTAGGTTTAAGTGCTGAAGTCCCGATCAGGTCATTTAGAGAGACTTGGT---CTCAAAAAGGAAAC------CT-------------GTACTGTGACACTTGTTAC-TTGGATAGTTTAGTTCCACTTACTCTGGAAAAGACTGATAAGTTAAGAAAGAA-TTCCCTGTGCTCGCCATTATTAGGAAGT-----TTTGTTAGACGCCT-ACAGAGTCATTGGTGCAGCTGGTTTACACCATTTAGCTAAATGCCCCAAAGCACTGAAATGAACAGTATTTCATATTACTGTCTGAA-----CAGCGATGACTgtctttacttttcaaaaataaccccatagtctttctttaaaatatattctta-----ttaaTTTTCTCAAGTAAAATTTCTCAAATACCTTTGGTATACCagtactttataaaaaaaaatgtatacaagcTCCATCCTTCACT--TTTTTATTCCATCTGCACATCTTTCCATATCTGATGCTTGGtaaaaatgtacacaaagttttaTACCACAGATTAGAAGAAATTGCCTCAAATACATCCAGGAATGTTAAAAC---TAATCAGTTATTTCACATTAATGAAAGTCTTTCAGTCTCCAGGGccaa

a score=5079
s chr3           157070695 404 + 160039680 TAACTCTCTGAACACGCCAGGTA-TTGAGCTGCCCATCAGAGAAGATCACTGTCATCATCTAAAGTTTGTCAGCTGCTGATCTACACATTTTGGGTGAAATTTCTCAATAAGACTGAGCAAGTAAACAGCATACCAGACCA-GGAGGCAGTTTTT--GACAAATTTTC----AGAGTTCTGAGCAAAAAAAAAAAAAAGGCAGAGCCACCCGATAAGACCTTGAGGAGCTCAAAGCTTCCAAGGC-TGTGTCAGAAACAGAATCC---CAAGGCTGTTGTCTCAGAGGTCAGATTTTGACAAGTTCCTATATTCTTGGCACTTTTATTGCAAA--------AGATTTCCATTGACTTTAAGGACTTGTATTGCAGAGGGTTGCTGGTTAATCCCTCTGGAA--TTTAGGAATGGAAGATAACAAAC
s HiC_scaffold_1 144230419 383 + 233722169 taactttcaaaacaCTCCTAGCAGTTGAGCTCTCTGCCAGAGCAAATCGTTGTCATCAGCCCACATTTGTCAGTGACTAATCTGTTCCCCGAAGTTGAACTGTCTCTATTAGACTGAGCACATTTGCATGGTGCTAGATGAGGGAAGTATTTTTTAGGGCAGGGTTTCTTTGAGAGCTCT-------------------GCAGACCAGCATTAGTGGACTT------GCtcaagaaatccaccacaagTGGGAACTGCTGGGTCCACTCCACTCTGTTGAATCAGAATT-------------GTTGGTGTA--CTTGG--CTAGTGTTGCTGAATTTTGTCAAGTTTTTACTGATTCCCAGCAGTCTTTCTGCAGAGGGCTG-TGGCTCATCCCTTTGGAACTTTCTCAAATAAGAGGCAACAAAC

a score=5610
s chr3           157071581 313 + 160039680 GTTTTGACTTTTAGCTTTCTCTAAATCATAGTTTCTGGTGCTCAAATGTTTACAAATGTCCCCTGAACAATGTGCTTCACATGAATTTTGTT--------------------GAATTTC---ATTCTTTTCCA--CTGAG----------------TAGTGTTTGAA--GTGCAGGTGTGCAAGAGATAGTATGTGCATTGTGTCTCTTGGCTGTGATAAAGTTT-CAAAGTAGTAATCTTGTGAAATTATCAAATCAAATGCCAAAAACTGAGAATCACCTGTGGATTTTACTGAGCTGACTTCACAAAGGAGTGGAGCCAAAGTCCCCCAAACAAACCCTAGTTCACAAAAACTC
s HiC_scaffold_1 144232114 341 + 233722169 GttttgtccccttcccctcccccagtcGTAGCTT-TGTAGGTCA--TGTGTACGAACGTTCTCTGCAGAAGCTGTGTCACACTGATTGTGTTTCGCTGCAGTGATTGGGTTGAAAGTTCCCTATGCTGCTCCATGCTGAGGTTGCCTGTACACGGTTGTTATCTGAGATGTGttggtgtgtgagtgtgtgtgcccCCATTG------------GTGACAAAGTTCACAAAGTGTTAGATTTGCAAAACTGTCCCTTGAAAAACCAAAACTGGGGAGCTACCTGTGGATTTCACAGAGCTGATTTTCCAGAGGAAATTAGCC-CAGCCAGCTGAATAAACTTTAGTTCATCAAAGCCC

a score=32121
s chr3           157073459 5094 + 160039680 [encoded data, 6094 characters]
s HiC_scaffold_1 144235840 5739 + 233722169 [encoded data, 6094 characters]

a score=20638
s chr3           157079610 1814 + 160039680 CCCTTTGCTGACATAAAGTATTCTTGATTTTGAGATGAGCA---------------------AGCATTAAACTCT-----TGCCAACTGAT-ATATGCTTGCATCTCTC--TTTGCTAAATGTAGCCTCTTCCAACTACTACAATGGAGAATACAGGCAGGAACACCCTGGATAAAATATAACTCATGTGCTTTTGTCCCTACTTCAAATGTTTTGCCTACAAGAAACCAT------AAAAGCTGTCATAGAGGAGTACAG-------GCTCCTCTGCTGCCCTG-GAGCTGCAGAACCAACTGAATTTCTGTTTGCAGATCTTGTGAGTTATGGGA---------------------GCCTTTGAAGTCAAGTATGATTTCTTTCAAAACATTATTGAATTCAAAATAGCATCCGACCATCAGCCTCTGAGATGAACTTTCCTGACAAAATAAAAGAAAAC-ACAGAGGACAGAG-CACTGTTTGCTCAACCCCAAATC---------ACACGGATCCAGAATCCAGAAGGAGTTTAGACAAACTATAGAAGGCTTAAGAGTTT-------AAC-TGAAAAACACCCACTCAGATTTACACTTGGAAGGAAGC----CCTGCTTCTGCCAAAGAC-----------------------------------ATAAGATGTCACTTTCCTTT--------TCTTTTGCCTAAGAAACTTCCAGAATGTACCAAAGAGGTAACTAGACCATTTCTCCAT---GTGAGACCTCAGCCTATAAAGG--CAGCCCAG--------CTTTTTTTTTGACTCCT-------TTATCAACAGGCTGTTTGTGTTCTCTGGA--------------AAATGTTTTCCATAGGCTGACAATTGTGA-----------------------------------CTTTCCCTTGGTTCCATCATTG---GGAACACAGATAAGA-----AACTGAG-------TTGGTCCTGTAGATTCTGTTTATTTAGTCCAATGAGTCACAGGAAAGGATAGG-------CCATAGACTT-ATTTGATACTTGGGCCTGGAAAACACATCTAACCAGCTATAGGAATAACAA-GGATGACATATTTATAAACTGTAGAC------CTGAACACATTTGAGTTCAAATTAGAACTATGCAAAGGCAGGGACAAGGAAAACAAATGCCCCCA-------CATGCCAAACAATGAA--------------------------AGGGTGAAGGTCT---------------------TAAAGCTTAGAAG------------------TATCAGGCAGG---------ATTGACTGCA--------GCAAAA---------GGAAGGAATTTAGA---------------------------------------ATTATT-----------TTTTTAA-------AAGTTAGCA-----TTAACTCCTGCCACAACCCATGCTGAACACATAGATAACACACTCATGGTGTTAAACACATAAAACTTCTGGGGACTGGATTGGGTGAGTGCCATGCCTCTCACAGTATAGC----------------------ATACAAACTGGGAG--AAGAAGTGTCCTTTAAGTGCTATTCTGTGTAGGGGCTGGACA--------CTCTGTGGAAATACAGATTTCGGTGTCAACATGTCAATCTTGAGAGACTGGAGACAAAGCATTGGCTCTTTATAGTAAGAAAGATAACACTAGCCAC---TCTGTCATGAAG-CCAGGAAACCAAAAGGTGATACATATGAATGGAAAAATAGGGTAAAAA--------TCATGTCACCCATTCCAACCTTGGCATGTAATGCTGAGAGAAG--AGAGGTTGAGTTCGGAAAGAACCCTGTTCTGAAGGTTCCCTATAGTGAAGCTCACTT-----GGGCTGGATTTACGCC------ATCTGCAGGGTA-TAAAGATGCCAAGT-GATGGTTAGGATGAATGATGTTTCA--------AAGAACTTGGTCCCTAGATGTTTGGCAGAATGAAAAACCACCATGTTTTATACACTACACTCTAGAGCATGCTTCAAAACTCTTGTATAGATATAATTCAACAACCATGAATTCTTAATTAAAAGCTTCATGCATGAGAGAGAAAGCACACCAACTTCAGAGAGGCAAGAAAGCCTACAACCGTGGGGTCAGGGAGACAGACACTAGAAATG----------CCCAAATAGAAAAGGGAACAGGCA
s HiC_scaffold_1 144241926 2200 + 233722169 CCTTTCCCTGACCTGAAATATTATGGAGTTTTAGGGGAGAATGATGGAGTTTCATGCAGATGAAAACTAaactttatttctgttgcttCATTGCACATTTGAATCTATTCATTCCCAAAATTTAACCTCCCCTGACTAATACAATCAAGGATATAGACC----TAttgttgaagaaatacaaatt-tttgccTTTG-CCTTACTTCAAA-ATCTAGCCTAGAAGCAACCAGCTTGGAAGAAGCTCTCTTAGAAGACTGTAGAGCTAATGCTTCTATTTTCTCCCACGCAAAGCATAATCTGCTAAACTTCTGTTTGCAAATTTTATGAGTTATGGTGAAAAAAATATCTGAATGTAATGCCTTTGAAGCTA--CATGATTTTGCACAAAACACAATTAGATTCAAAACAGCATCTGGTGAATGACC------ATTAAATTTCCTAACAAAATATGACTAGGCTAAGGAGGAAAGGGACAGTGATTGCAAAAgtccaaaaccaaaaacagacaCAAAGCCAGTACCCAGAAGGGatttgga---------gaaaaatgaagaGTTTTAGTTAGAACATGAAAAACAGT------GATCTTCA--TGGAAGAAAGCAGTTTCATCTTTTCTGAAAGAAGACAAATAACAacgaacaaaataaaacagaatgaaacaaaatgtttccatctCTGAACTTCTGTTTCTTGGCTAAGAAACTTCCAGAATGAACCAAAAAGCAAGCTGAACAATTTCTCTTTATTGTGCAACTGAAATTTGTagagaaacaacctaagtattaCTCTCTTGTTTTCACTCTTCCCTTACTTATCAAAGGACCTAATGCATTTCCTGGGTGTTTTTACAATTTAAAGTTTATATATAAACTGGAAAAGATGAATCAAAGACTGCAAGAAACATGCTGCATGCCTCACCTTTCCTTTGGTTCTAAAACTGATGGTATCAGAGACCAGAGTTAGAAATGGGCCCAAGTTTGATGCCATAGATTCTGTTTAGTTAAATCTCCTGGACACAGAAAAGAGCAGAGGTGTGACCATACCCCCCACTCTGCCCTTTGACCCAGGAAGTGAATCTCAACTGCAATCCGGAAGACAGCTGATGGAATATTTTTGAACCTCATACTGTGTGCTAGATATGCATTCATTCAAACTAAAAAC-TACAAGGATAGCAAACGGGAAAGAAGGCAAACCTAAAATATGTATAGTAAACAAGgaacaatattaaaaaataaataaaatttggaagTGAATATTTAACTGATTCCCTCTAGCAGAACAAAGTTTAGAAAACTACTGAACACACTTAATattatgagaggaaaaaaaaatttcccacaaAAGAATCGcaaaacttgaaataaaaagaaacttagataaaaggacaggaagaaaaaacagtagACAGTAGGACGAATTATAAAGACGGCCAATTGTGAAGAAAAGAAAGCTGGTGATTTGTGATTTCCTACCTTCACCTATAGTAGAGATATAGAAAATCC-CTCCAAGTATTAAACACATAAAATTGCTAGCAGCTAGATGAAATAAGAAATATGTCTTCCACAGCACAGCTAAGCTTGTGACAATATGAGACACATGAATCAAAAGCCAGGCAACATCAC--AATTGCTGTTCTCTGGGCAAGATGCCCAGGCCACAGCTCCTTGGAGGTGTGGATTTTGGTTTTAACTTGCTAGGCTTGAGAGATTGGAGACAAAGCATTCACCCCTTGTAGTAAGAAAAATCGCATTAGTGACATTCCTCTCACAAAGACCTGGAAACGAAAAGGTGACACACTCAGAAgttgaaacaggaagaaaaatctcaGTCCATCAGACCTATCCCAAACTTGACAAAGAATagccagaaaaggaagagggtgggtg-aaacaaaatttttctctgagaattCCA-ACCATAAGGCCCTCTCTTGTAGGCCTGGAGTCACAAAAGAAAGACCTGTAGActcttaaatatatgaaatagaaaatgaagttGAAAG-TGTCTCAGGAGTGACAGAAGCTTGGC---------TTTTACAGCA-----------CACATTTTATACATGA-------------GGTACAAAACTTTGAT---GACAGAGTCCAACAACTATGAATTCCCAATTAAAAATCCAGTatatagaagagaaagaa----agcgtCAG-TAGAAAAATAAGCAGATAGCTACAGAATTAGAGATGCAAATACTGCAAATATTGGAATTATTTCAAATAGAGCATGAAAAAGATA

a score=48964
s chr3           157083421 2659 + 160039680 TTGTACAGTGCCTCCAGCATTGTGCACAACACTCACTAAGTAACTCTCCAGTAGAAATATGGAAACCACAGGCCAAAAAGGCT-CATTCCTGGCAGTTGGTTCAGAGGGGAATAAACCTGCCATGCA--AGCACAGTGTGTACTCAACACTGAGCCCTTTGATGTGGCCATTGTATAAGACTTGCTGTGAGTAGACTGACAGCCAGTGAGTGAG-GGTTGTTATTAAATGTGTTGATTCTCAGTCACTCAGAAGGTGTTCACGTGTG-GCATTTAACACA---TTTGAATAAACCCTTCACTACTTCCTGCATTATACTCATTTCATTATAGAATAAATCACATTCTTGCCACACCATGTAATTGACAAATGAAATTCATGCTGGGTTTCAGAGTGATATACTAAAGAGGAAAGCCTTCAGTGTGAGGGTTTATTTTTGCCAATGTCACAGCCCCTCTGTGTTTCAGGTACATATACAAAAATCATCTGGCTTAAAGTTCCCCTTATCTACTCCTAATTATATTCAAGTGGATATAAATA--------ACCGGTTCCTTGTCTTTCTTTATAGTGTAAATGTAATAATGCATACGTTTTCCT-CACTTGTTAACGTAAACTGTTTTAGAAGTGTGTGCATAATTT------TATTACTGAGCTTTATAAGTCAACTATCCTGCCCATGTTTGCACTCTATGA-------GAAGTGTCTGTTAGAATTCCACCCATGT-CGAAACAGAAGTTTCCAGGGTGATTTTCAAGTTGAC-TTAAATAGATTTAAAGCTATAATTCAATTTCCCATTGCCTGTGAGTCACATTAGCATTTTCTATTACATTTGATAAGGCAAGTGTTGATTTCTTCTTGATACGCCT---TCTTTCTTCACATCTCTAGTCTCCAACTAACAAGATGTTAATGTCACAGGATACAAGACTGCACACTA--CAAGAGCCTCACTGGC------------TTTGCAGACTACCAGGCGACTGTAAGGACTTCATTAAATATCAATGTCAGTGTAGTC----------CAGCCAAAACAAGGAAGGATGAGACATACAC-----TCCATGAAACAGCCTTTTACTTTTAATTTATGTTAAATTGTCAAATC-----TTAATGAATAGAAAATGTGAACTCCCAAATAGGATCCTTTGAAAATACCCTTGTTTGCAGATATTTCTTTTTTAAATTATAGTAAAGGTGTGTTCCCATGCGGCTATAAATTAAATACTGTGACTTCACACCAGCATCTAGTAGTCACTCTGTGAGTGAAGAGCAAACACCAAATAAAGTCAGCCACGCAGCAAAACCTAAAGTTCAATACCATTAATTTAATTATAGAACATAATCACTTGACAGTGCAATGGGTTGGATTTAAAAGATGATATTGAAATTGATTGCTAATCATTGAAAGGTGTGTGGTAAGCATGAGGCTACCC-TGTGATGGAAGGCTATCTGTCTATCTGAACCCAGGGACT---------------------------ATCAGCAATGCATCATG--GGGTGC---CGGGAG----------CTTGGGCATGTGTGACAGTCACCAGCAACACAGGGGATGCTCATGGCACACAAGCCCTTCAC---TGGA-------TGAATATTTGCAGTGGACTCTGCAGTGGGAACTG-CATCTCCAATCTCACAAGTGAAGGGAATGAAGTTCTGAGAGTTAGGAGTAACTGTGTA--GGTCAGAC-CAGGTTAAAGAGTAGGTACTGTGTGTGGACAGAAAGGCTAAGCCTTGAGCTAATCCT----GCCTCACTGAAGGAAAGATGGAAATGCAAACTTCCCTAAACTTGACCCTCTAGGTGTCTTGCAGTCCTGA-------TGTTTATCACC-AGCATGGACTGGCTGAGAAGATCCTCTTTCCAGAAGGATTTTCACAAGTCTCTTTTTC-----TTCCTCGGGACAA-------ACAGGATGGGTCAAAAAAGTA-AAATATCTCAGGGTTTTGTATGTGTTGTCAGACATCTA-GCATGGCAGGGGAAGGAACAGCCAGTTTCACCAGCTG-GCACCTAGAGGGACCTGCTGAGAGCAGGGAGGGTTGCTGCTCACACTGAGATCAGTGAGTTG-----TCCTAC------TTTCCTCCTG-----------------------------CCTGCT-----GGCCATCTC-CTCCTTGTATTGTTACTGTTTCCC-----TGAGCATAGCTCACTG---------------GTGCTCT---------GGGCTTAGAGAA---------ACAAAAGAGGAAGAGTCAAGGCCAAGTTTCAAAA--------------ATCAGATGCCAGTAGTATTTATTT--GAGATAAGACTTAAGGACATTTATTACCTGTATTTTCATAATTAGAAAACAAAACTTTTAA--AACCTAAAACACTTTTT--GCTATAAT--------ACATTTTTTCTGCTTGTAATGACCTGTGGTATGTGC-----------TGGAGACATTT--TTGGTAGCTTGGGACACTTATCTCAAGTAAAAAAAAAGAAGAATCATTATAATTTAGTCCTGacaaagcaatttcatacaca-cacattaacctattttaattctcacaaagccacttcgttgtaagcgatctt--ttcctgttttatgaatagaagagtttgactctataaaggcttagcatcattct--aaatggtccagctg-ttagcctcagtgctgagactagaaAATATTCCAGGGAACAAGAACCCACGTCCCTCGTTCTACAAACTGCATTCAAATCA-----------AGACCAAATGGTGCTGTGAGTGGGTTCGTTGTATATGAGCTGGTTTCCTAGTAGTGAACATTAGTTTTCTTTCACTAATTTTTAAAACTGCAATCCAAGTTTA
s HiC_scaffold_1 144255347 2851 + 233722169 TTCTACTCTGCCCTCAATACTGTGCTTGGTACCTAATAAATCACTTGTGAAT-GAAATGTTGAATAAATAAGTCAGAAGTACCACATGCCTGGCAGCCAGTTCACAGTGGTTGAAAATTTCCACACACAAGCATGGTGGGAACATAGAGTTGAATCTTTTGATGTGGCCATTAGGTCAGATTTGCTCTGGGTGGCCTGACAAGCAGTTAGCCAGAGGATATTATTAAATGTGTGGATGGTCAATCACTCAGTATGTGTCCACATGTAAGCATTTAAGATAAATTTTGAATAACCACTTCATTACTTTCTGCATTACACTCATTTTCATGTAGAATAAATTACACTCTTACCATACCATGAAGCGAACAAATATAATAGACGCTAAGTTTCAGCATAATA-------AAGGGAAgcttttaatgtaaatattcattTT-ACATAGATCATAATTGTTcactgttacacacacacatat-----tgatCTA-CTTTAAATTACCCTTATTTCCTTTTGATTATTTGTAACTCTATGTAAATCTTCAGCTTACCAATTCCCTATCTTtctttataatatacatataataatgCACACATTTTCCTTCATGTGTTTGCAGAAATTATTTTAGAGCAAGAGGCATACTTTCCCTTATATTACCATACTCCACAAATCCCTAATTATGCCCATGAT-GTGATCTGGGAATAAAATGTAGCATTACTTGAGGCTCAGTTCACATTCAGGACACAAGTTGTGAGGCCAATTTTCAAACTGATGTCACATAGAT---AagttataatttgatttcttattacccGTAAACCTTATTACCATTTTCCAATACACTTTCTAAGGCAGGTTTTGGTTTCTGCTGGATAATCTTGATCCTTTCTTCATCATTGGAGTCTCAGATTAACAAGATTGTAATGTCAGAGGAAGCAAGTTTACAAGTTAGGCATGTGTCACTCCAGCCTAGGTCTCCCATTTGTAAATTATCTTGGAGC-----AGGTTTC--TAAGCCCCA--GTCAGTGTTGCCTGCTGAGACACTGCTCAGACACTGAGGCACAGAACATGTATCTTATTCTGTGAAAGgggctttta-ttttaatttttgctaaaTTTTCAAATCCTAAATTAATGGATGACCAATGTCGACCTCCAAAGTGGCTCATGTGGAAATATTTCTGTTTGtggttgtct-ttttaaaaattgtattaaagGCTTATTCTTTAGTGACTGTAAAAGAAATATGATAACTTCCCACCAATGT-------TAACTCGATGAGAGTATAAGAGACATCAAATAAAAGCAGccatgcaaagaaaattaaagttcaATATCATTAATTTAATTATAGTACATAATCATTTGACAGTGCTATAGATTGAATTTAAAGGATGATGTTATAATTGATTGTTAATCATTAAGAGGCCTGCAGTAAAGATAATGCTGCCTGGGTGGCAGTAGGTTACAATTTTATCCT-ATCCAGGGACTAAGTTGTGGGAACAAATGGCTCTTGTCACGATCAGTGAATCGTGGAGGGTGCAAATGGAAGCAGAAGGTGCCCTGTGGATATGTG--------CAGCCGAGCAATGACTGCTTGCAGCA---gaacattttacatataaaatcacatttaaattttataataaatggtGGGGTTGGTACAGTTATCTCC-ATTTCACAGATAGGGGCAATGAAGTTCTGGAAGTT-TAAGTAACTCCCCCATGATCATATGCTGAATAATGAAGAGGGTCTGTGCCTCAGCAGAATGCCCCAACTGTGATCTACTGCTTAAATTCCCTCCAGTGACAATCTGCAAAGGGAGCTGCCATCAATCTTAACTTGTTTGGTGGTCACTGGTCATGATACttattgttgatcacctaataACTACAAGCGAGGAACAGCCTCCTTCTCCGCAGGTTCTTTCAAATTTTCTTGTCCCCTTTTTCTCTTGATGAGTTGAGGGTAGGTGGAGTAAAAAGAGtagaaatgttttacattttgatcTATGTTATTAGGCAGCTATACTTGACAAGAATAAGAG-AGACTGT-------GATGTGCCCTTGGGGTTATATTCTGA----AGAAAGAATGATTAGCAGGACAGAGACTACTGACTGGGAAAATTCTACCCAACATGGCATCCTGTGGTGATGGAAAAGAGGTGTGAAGAAGTATCCACTACATGGGACATCACGCCCAGTTTGTTCttattcattttcttggttgTGCAGAAATCATTGCATTGTAGGGcaattgtattttcattgtcaATAGCTTAAAGAAGTCtgatatgcaaataaaatataatttggac----ttacaaaatcattttttttcttaacagacGCTCATAGTATTTATTTgagagataaaatttaa-aacatat-tggCTCTTCTTTTCATAATTGAACCACAAAGCTTTGAGGCATATTGGAAGATTTTCTTAACAATAACTTCCAAAAACAATTGTCCC--------TAACTTGTAATATGTTCATTTACAAGAATGCAAAATTCTCCTTGGTGGCTTAGCATGCATTTCT---GAATAAGACAATAAGACTCGTTTAAATTCATATCATTCAGAACACTTTCAcacatatcacatt----tttttttaccatcata---------TGTTAAAAGTAGTAATAATTCCTATTTTGCAGATAGACTACATGAACTCTGTAACAGtctaatattactctgaaaatGGACCAGATATTTAGTCCTGACAttgaaact-gaaattattttttcaaacatgAACTTTTGATATTTGTTGTATACACTATGTGCATATTAGGTTTTCAGTTGGACCACAGGGC--------CTAATTTATTATATCTGAACTATGTCCCTTGTAACATATATTCACTTTTTACTATT-CCTTTGGAAGTTATCATCCAAATTCA

a score=61487
s chr3           157088538 2993 + 160039680 CAATGCAA-GTAAAAGTTTTTGTGAGATTTCTGTCAAAGGATATACTCTCAAAACACATTACT---ACTCCAAGATGAAGCTACTATGAACAAAATATTAAATAATAGAGCGCTTTATTTCAGATCTTTTGAGTAGTTTTCTGGACTCCCTAATTGGATTTAGACAGCTATCTCTCCGTCCCA-------GTCTTGGATACATAAACCACAACTC-TGATGACTTAATTCCATCGTGACCTCTGATTA------TCAAGTCACCAATTAGCAA--TTCTAATTTTCCC----------------------------------ATCTAGGTTCTATAGCAG--TTACACAGAAGTATGTAATTTATCATGGAGCTTGACAAACTGGCTTCAACTGTTGTCCTAGCCATTCACAATGTATTACTCAAAACATTCAGAACACACTTTTCAGCTGGCTTGTAAGGGTCACATCAGAAACTAGCCCCTC-------TAACCCAGCAGAAAAAGCCCTCATGGAATGCTTTCTGCATCTTTGGAGTCTGTTAA----------ACCTCTATTTATCTAGCACGTGACT---------------------------CAACTAGTGGAA------GCTTTC----CACTGAAGAGCCCACACTCATTCCCTTTGCCTGTGGAATTCATGTATGGCCAGGCATTATAACAAATAGTCTGCTATAGAAAGGTACTATGTGGTAATCCTAAAAGTGCTAGTTAGGGATCAAGTATTTCTTAACACCTGCAGACAGCTGCCTGCAGAATACTGCAAATGGATTTGTTAAATATGAGGTCAGGAGGTATTTTTTTATATAGGCTCCTATAATTGGGAGGTGATGGAACAGCCCCAGAAGCAAACTAAAAATCTCATAATGCAATGTAGTACACAGTTTAACACTAGAAATCATTCAAAGTTATGTTTTAAAGAAAGACAAAGTGCAAAGGTTGTACATCCCT-CCTGAGGAATGTCTTCTGGTGAGTCAGACTTAAGATATAACACCCAGGCTATCAATTTTTAAAATAAATTTGCATAATAAAAGAAGACATTGGAACTCTGACTTCTATGT---------------TGGTAGATTTGGGATCAGTTCCAAAA-AATTGCACTTTGGGCATGGACTATTC--ACCTGGAGTTGATAGTCATGAATGTGAGAGTCCAGAATGTC-TTTCTGAAGAAAATCTCCCATCGTTCATTT---------------------GGGACAGAG------------TTTGTACATTACATTTC-ATTGCTGCTTGGAACCCTACACTTAGGATTCTAAAAGGACCAGCTGTTTCTATCTCCATGGTAGGTCT----------TCTTTTCTATTCTTTATGATTGGAGTTAAGACAAATGAATCGCCCTTGAGGAGATTTCTCAGCATGTGACTCT-ATAAAGGAATTATTTTGGTTTAAGAACAATGATTTGAATGCAAATGAATATTCTTAAAAGTAGTGTTGGAAACCCTAAA--ATTGTTTTCAGTGTGTTCAGAATAGAAAACTGGTATAAAAGATAGAGCTGTT------------------------ACAATGTCCCTGAGTGAGGGG---------------TCTCTG-----GTGGACTCATT---TGTTTGTTT--TCTTAGAGAGCCAGTGTTACTGTTTCG-------TGGAGATATAACATGACAAGAAATGAGACCAGCT-CCTCCGCTGTTGAATCATTGAGGACAAAACTTCCTCCAATTCACTGTTTTATCTGAAACACTCAGGACAGAAGAT--CAACTAAATAAGTACATTCAATAGCTTCAAATGGCAA-----CCTTGTGTAGGAATTTGAACTCTCAAAGGCACCAGGCATCCAG---CTCATAGACATTCTAAAGTAAAACAGCGTCTGACAAGGCTGTGCATGGAGTTGGAGCTCTTGTAAAACACATTCCA-------AGGGGCACGATT-------------CAATCACTCAGAGGAAGCTGTT--AGAAAAACAAAGATTTAAAAAATGATGTGACCGTCTCCAAATAAATAAGTTTTTTTTTTTCTATGAGAAACAAAGGCTAAGTATCTGTTCTGGTCCAAAGAAAAGTTAGGACCTAGAGCATAAGACTAATGAACAATGGATTTCAACGTAAGAGAAAAAAAAAATTGATGTGTCCCACACTAAAGCAAGCTAAACTCCAGGGCTGAGGACAACTGGGCTAAGAATGTAACTGAACTCACATGTATTTTTGCCTCCAGATAGTCAAGATGAATAAAAACCATACTTGAAGGAAAACAGGTTTTCAAGGGGAGCTGAAGGTGATTTCCTCTCAGGAAAAAT--ACATTAAACTTCCTGCCTCTGTCATGATAGGAAGAGTCAATCAAGATGTGGGGTGAGTCAGGCGTTGACC--CTAAGG---AGCCTCACTGGATAGTTGTAGCTCCACTTGCT----GGCCCTTGTTTAACCTACACATCTGTTTTTCTTGCAGAAGCCTCACAAACTCGTA-AATTTTTGGTCAATAGCAAGTCCACTGAGCT-AAGAATGTAACTGAACTCATGTGTATTTTTGCCTCCAGATAGGCAAGATGTATAAAAAAAAATCATACTTGAAGGAAAGCATAGGTTTAGAAAAATTAGTTCTATTATTA-CAGAATACTGTG----------CTAAGCGTTCCTCATTTGTCACATGAAAGCCCACTTTAAAGTGTTTAATACATTTTCATGAATGATTTAACTCTGCAAATAGCTTTGGTAAATATTTGATTTGCTGTTATTAAATTTTCTTTTGCTGACCTAACCTTT-GACAGTTATTTTACTTTGGCCTGATACTGTTGGATTTGAGTCATTTTCACATAGGGGTAGCTATTCTAAAGAAGGGTTTGATAGAAAATGTGTGTTTATACTTTCTTATTAAAGGTTATATATCCTAGAAACTGACACTTTTCAAGATAAAGTAAGTCCAAGTGGAAGGCCA-----------CTGTTCTTTGGCAATAATAGGATCAACCAAGACAGATCAAGG-----CAAGTGTCAGAAACAC--AGAGATATTGTGTACAATAAACCCAAGCCTTGCCAGAACAATGGGA---------------------------TCCTTTTTGTTCCCTAAGAAGCTAAATAACAAGAGCAAGGTtatatatatatatatatatatatatatGAAAAGGAAGTTTACAAATCCTCACAAGGTTTCatt-taaaatatataaaaaaagaaatttaGTAGACTTAATA
s HiC_scaffold_1 144266806 3079 + 233722169 CAATGTAAAGGAAATGTCTGAGCCAAATTTTCATTGAACAATGCACTTTTGAGACACATTGTTCTGACTTC---------CTGCTATGAACAAACtctaaggaaa---aatattttctttaagagcTTCCCAGTAACATCCC------------TGTATTCCACCCTCTTCCTTTATACCCCAAGATGTAGAATCAGATCCAGAACCCAGATCTCCTGATCCTATGGCTCTATCATTCTGCTGGATTGCAACACTAACTTCTCCATCCAGCACATTTCTAAAGTTCCTGCCCACacattgtttgcctgtttgtatTTCCAAGACCTTGGCTTTATTGCATATTTATGTGAAAAAGCCTAATTCATTACCAGGTTGTAGAGGTTAACTTTTACTGTCAATGTGGCAGTTTTCATTGAATTACTAAAAgtattcagaatatatatttaaactGAGTTATAATAGCCACATGGAAGGCCACAcccttatttttttatcttt------aaacttATCATGGAATAACTCAAGCAATGCAGGCATTTGTGAAGATTCAACTTACTTCTATTTATCTGGTATTTGTTTTTTTACCTTTTCTGTCTTGGAATTTTACTATTAGTGAAATGTATCGCCTTCTCTACACAGCAGTGTTCACA----TTTCTTCTGCC------------GCATGATCAGGCATAATAATTAGTATTATCCTGTGAAAGGGGACCTTATACAAAT---ATAAGTGTTAACAATGGGCCAAATATTTGTAAGAACCTACAGACAGATGCCTGCAGAATACTGCAAATTGGTTTGTTaaatatgaggtcatgag----ttttttTTATAGGCTCTTGAACTTGAGAAATAACAGGATGGCTTCAGTAGCAAAATAAA--TCTCAGATTGGAACATGGTTTAAAATGCAACTgaaaaaatcattcaaaattaCACTTTAGAGAATGATGAAACACAGAAGTCATTCAGCCCTGTCTGCAGAACTTTTTCTGGTATGTTAAACATTTAAAGTAATAGCAAGA--ACTAGACTTTGGCATAAatttacagaacaaaaggaaaac---gAGCTTTTACTTCTGAGTGTATATATTTCTAGATAGAAGATTTGTAGTAAATCCCAGCATAATTGCAGTTCAGGCTTGAAATGTTTTACCCTGGATGTGGTGCTTACGTCTGTGAGAGGCTTGAATGGCATTCCCAGAGATAAACTCTGCGTATTCTTTACCCCAATCGAAACGAACTTCAGTAACAGAGCCAGGATGTGTGTtagtatgtttcatttttaatgctgATTGAATGCCTA--------------AAAGAACTGACTATT-CTATTTCCATGGTGGGGCTCCCCCCTGGTTCCCCCCTGCACTTTAAAATCAAAGACA-GAGAAATGAAACTCCCTCCAGG-GCTGTCTTAGCATGTGGTTCCCATAAAGGAATTATTCTGATCTGAGACCCATGGCTTGAATG-GGATGTGTATTGTTAGAAATAGTCTTGAAAATCCCAAAGAAGTATTTTAACTAtgttcagaaaatggaaatggtATAAAAGATAGACCCATTCTATTCCTTGGAAGTAGGTTGCATATAATGTTCCTGTGTGAAGGAGTTAGAAAACCACTTTCTCTGAAATGgtaaattcattgtgtgtgcgTTTGTCCATTGAGAAACAATGG----GTTTCACATGAGATGACGGTACGAT-TAACTGAGGATGAGTTTAGATGACTAAGCT--TAACATCTGGAGGACAGAAGct------atttgctgttttattttgaatcCCTCACACAGAATATGTCAAGTAA-TCAATAAACTTCATAA-TTCAAAGAATGAATGAGTCCTGCATCAGAATTTGTATTCC---ATACTTTGGATACCAAAGGACCTATGGAGGTTCAAAAATATCAATGCAT--------GCTTTGGAGGTTGTTGCTGCTactgttgtttggtttttatttgtttgtgtgtttggtttttttttatgtgACAATTAACTGGAAATATTTTGTCgaggaaaataaagatttagGAAGC----TAAAAACCTCCAAATAAGTGA--------------ATAAGAACCAAAGA-TAAGagtttaat-------gaagaaaaat-agagcTCA---cttaaggcaaa--aacaaaaaatgtcacTGCAA-----------ATTGGAACTGTCCTGCATTGAAACAGGGT----TCCTAGG-------------GGGCATAGGTGTGGCT-------CAAGCATCCTCGTC--------------------------------------------AGTCTTCAGGCGG--CTGAAGGTGAGACCCTAGAGAGAAGCACGCACATTTTATCCCTTGTACCTATCACAA-GGCAGGATTCCATGCATGTTTA---TGGATTGAACACGGAACAACTAGAGCCAAGCCTCACAGCGCTGTTTTCCTTCTGCCTACCCTCAAGCCCCGGTTTAACGCACACATCTGTTTTGCTTCCAGAGCTTTCTGATTTCCCCATAATTTAAAATCAATAGCAAGTGCACTGAACTTAAGAACTGGACTGAACT----------TTTGTCCCCAGCTAGCAAAAGTGGatgaaaatgg--------taaaagaaactacaaccttggaaaaattagttttattattaACAGAATATTGTCATTTTACTTCCTAAGTATTCATTATTTGTCATATGAAAGCCTACCTTaaagtatttaatatattttcatgaatGATTTAACTGTGCAAATAGCTTTGGTAAATATTTGATGTGCtgttattaaattttcttttgctgaCCTAACCTTTTGACAGTTATTTTACTTTGGCCTGATATTGTTGGATTTAAGTCATCTCCACATTTGGATCGTCATTCCAAAGGAAGGTTTGATAGAAAGTGTGTGTTTATACCTTCTTATTAAAGGTTATCTGCCCTAGAAACTTACATTTTTCTAGATAAAGTAAGTCTAAATGGCAGGCTACGTTTCTGCTGCTATTCTGCTACAATAATAGGATCAACTTAAACAGATCAAGGGGAAAAGAGTGTCAAAAACACAAAGAGATATTTTGTACAATACACCCTAACCTTGCCAGAGAGATAtgatctgtctttctttctttctttttattttcttttttttcccctaagagGTCAAATAACACAGGTAAGGTTTTG-ATCAATG-----------GTGAAAAAGGAAAGCTGATGAATCCTCACAAGGTTTCAgtataaattatgtttaaaagTAATTGCAATAtagttaata

a score=19763
s chr3           157094800 2489 + 160039680 atgaacagaacagaaaaaTTGAAAATGAAACAGGGAAAGAAAGGTTAAT---TTCACCCATCATAGCCAAAGGTGACATGCAAACTTTAAGCATTGATAGGCAAAGAAATACACTAACTTGGTTTATGCAACTAGTCACTAGAAAACTAAAAAGACAAAGTTAGCATAACTAATTAATTCCAGAGAGTGGGCAAATAGCACTAGATTACAATGTTGTTACTTATGAGGTGTTTCCATATAGATAAGAAATTTGTCATG--CATATGTATGACTTTAATGATACAGAACTAGTATTATTTATACTTTATAA--TATGAGATGTTGAGAGATTTCAGA-TGAATGCCTCTTTACACAAATGGCTTCGA---ACATTTCTCTTTTATTGTATAATATATAATA---------TTATTGCACATTTTCAGAAGTTATAAAGATAATCACATTCATGTCATAA--------ATGCAAAGAGCTCTAAAAAGGCATTTGTGATTGACTAATTATGTATGATACTCCCATTATTAACACACTTGTCCAATTAAAGAATAAAGCCTTATTAGTAAATGCCTTATTAGTAAGAGGTGGAAGAAAGATTCAGTGTGTAAATCTGGGGCATG-TCACACCTGAACATCTCACAATATCTACAGCTTTACAGTAGTAGGGA--AGGCCTTCTCAGCTGAGGCTTTTTAGTCCCCTG----GTATAGATAAAAGCTGATGTTAAATCCC------TACTGACTCCACTGAACCTAATAAAAATGGCCAACATGTCTAGGATTG-GAGCATCTCAGAATGCTGCCAG-AATGTGTTGGTTGCACTGGGGTACTGGGTAATTTAAGCACTTCTGACCTCTGTAAGA-------TATATTATTTCCATTTATTGAGAAGAAAAAGCAGATGGGGCATACAGGGATGTGCAGGGTTTCACAGCTTGTCAATTGTTGGAT-----GTAGATTTAAAGCACATTGCA-ACTCCCAAACCTGTTCAGTTTAACATCAGGTAGTCGTGTTTCTCACATGAACattggccacctactaagtgccaacagggc--acttaccacacttcatatat--tattttatttgttccttacaacaaatctaagaaatGAATGTCCT--TTATCTATGA-----AAATATTGCTGTCTTTTCCCAAGGCATGTT----AATTAGCA------------GGCTTCAAATCCAAATCTTTGTAGTTTCTGATGCTAAAATGTTAAGTTTTTAGGTTCTATTCCTTCTAAGAATTCAGCCTTAGTCAATAGAGCTTGTAAGAGGCAGAAAGAAAAGACAAACCTCTT--AGCTCCAGTAACAGTTTGGCAAAACGACAGGGTAG------------------AGAGGCAAGGGTTTGACA--------------------------------------------------------------------------------TCAAGTG-----------------TTCTCAGTTTCTTATTTTAGCATTCTGCCCATCAGGCTATGAGTATTTACTTATTTTC----AGTTCGGTTCCCTTTTTAGATGGACAAAGTGGTAACTACCCAAGGATATATTTGTAGGCATTGGATA----GAGCA---------------ACACGGA-------ACCTGC-TGCATGTGCCAGATGCCTGGTACATAGTAACAGGTTCTCATACATTCTTGCTGACCTATCCTGTGGACAGACATGTGAACT---GCTCACTCAGCCATTCACAGAATTAGAAAAGGCAATGTGCAGAGGCTAT-GGCTCACCACCATTTACATTGGTCAATG-AGAAAAAAGCCTGATCAGCTGCTCCATGCTG-TCTTGATGC-----TGTGCGT--------GTAATGCCTGCAGGAACAAACTGTACCAGAAAAGTCAAGATGCTTA----TGTAAAGCTATGTAG-----------GTGT-------------------------------------------------------------------AGCTAGCTAGCCAAAGTAGTGAGGCTGACAGCATTTGCATA--GACACAACCTGAGTGTAAGTGCCAGTAAGCA--------------------------AAAGGGGACA----GAATAAAGCAG----------TCTTGATGA---GGAAGTTCA-----AATGGTGCTTTGGCCATAGAAGAATAGTCTGGTATTGAACCTGGGTTGCCTTCCATATAGTGCCTTTGTACAATGCACACA--------------GTGGTTGACCTGCACTAATAACAGTAAAGCTTACAAGACTCTGGAAGTTTATAG--------CAAGGCACTTGA--CCTGGATCAAACAGCTAGCAAGTAAGAAGGCCTGAATGAAAGGTCCAACCTCTGCAAGCCAGGGTCTT-CCATGACCTGCCACCAAAATGATGGGACCTCAGAATGTGCCAAGCTAACTGCAGAAGCACAAGAGATAGACACCTGCACACTTAGGAAAAAAAAAAAAAAGGTGGCAGGAGCTTTTGAACATTTTCTTAT---------TCACATTAT---GGTTCTATTCAACAATCAGTATGAGCAGTAATTTTGTAGCTAAAATAAAGTAGCATTTTGTTTCATTTTAAAGAA--TACAACTTATCGGGGAAGTGAAACATGCCCA-------GAACATCTCCAAAGAGTTTCCAAA---------------TCACAGAAAATGAGGGTTGTTCTTTTTCTGGAGACACTT-GCTGCTTTACACTTTTAATTTTGTACTCTGTTCTAACTACTGATTATTATCATTTGTAAATTATCGAATAGACCTACAGA----------ATCACTATTAAAATGTTCTTTCCAGAATAAAAGTAAACGGTGTCCATGAG
s HiC_scaffold_1 144270991 2785 + 233722169 ATGATTAAACTAGAATGCAGAATAATGAGAAGAGGGATGGGTTCCTAATGTATTCATCTCTCTTACATAGAATgaatatacataatttaaatatgatcaaatgaaataatatactCCTTTAGGTTATATAAGTAATCAGCACAGAACTAGCAGAACAAAACTGCTATGAATAATTAATTCCAGAGAGTGGGTGGATGGTAGTAAGTAGCTATATTT-------TGAGGTGCTCGTGgatagctgaaaattttttcatgttcacatccattattttcataaaactaaacaaattttaattgcatttaaaaatCTGTGGAAAATGGAGAGATTTAAGATTGAAT---TATTTATGCAAAT-GTTTAGATAtatgtttccatctttttttagACTATACTATATGCATACTCTTAATATACTTTCTCTGAGATTAGAAAGACTGTCACATTTGCATTCCAATTTACTGTATGCAAAGGACTTT-CCAAGACATTTCTGGTGGAC--ATAGTATTTGATACATGCACAATTAATGCTCTTTTTCACGTTAAAAGGACTCCC--------AACTTTTTTGTCAATAACTGGTAG----AATCCTCAGCCCTTGAATGTAAGTCATGATGGTGCCTgaatattcctaaatatttgcCGCCTTGTGATAAAAGGAAGCAATGATTCTTA-CTACTGCTTTTCGGTACCATGCTCCATACACATAAA---TGCTCCCAAATTCTCTTGTGTATCACCACCTTTGAG---AGTGGTAACAGCAAAACCATCTAGGCTTTCAAACAGCTCAGAATGCAACTGGCAGTGTGTTCTTTACAAGgagttatttaattatt-------ttccaaTTGCTAAGAGACATGTACTATATTCATCCCATTCACCGATGAGAGAAA----CTgaggtttaaaagaaaaag--gtgtATCTCATCTACTCAATGACAGAACTTGTGGTAAAGCTGAAGATTATTTTAGGCTTCCAAACCTGCCCAATTCCAGACTACATCATATTGGTTCTCACAAATACTTT-----CCTGCCTATTCCTTATATGGCAGACATAGTGCTCTACATATATGGTATTTTATTCCCTGTTTACATTAAATCTAGCAGATAACTGCTATGATTATCCTTGAGCCTCAAAGA--------------CAGGCCATGTCACTGAATTGGTAGTGGTAGAGTTGGGTTTTAAACCCAAGTTATTATGATTCTTGAAGCTAAAATCTTAA--CCACATGTTGTATTTCTTCACAGCAACTAGCCTGAGGCCATAGCACTACTAAGAAGCAGAATatggaaatgtatttttttaaactgcattAGCAGATAAGCAAGACAGCAGAGTGGAAGCATGCAGTATCCTATAGAAGTATGCCTCAGACAGAgttgtgctctttttttatttttaagagtaggaaaatttattggagaataggaatagctcctgagagacagaagcggtcccaaatgggttgccctAGAGCTGCTTTCTAACTCCTATTTTTCACATACTGCTTACCTGATCTTTAGCA-TTATGCATTTTCTCCATGCTTAGTTCTCTTCTTA-ATGGGCATAATAACAACTATATGACAAGGCTTTCATAAGAGTtagaaattataaacatattatacatattatacaCATATtattacacatacatgcatgtgcTAGATGGCCTGTAAGTGGTAACTATTTCCATTACATTTTCCCCTA-TTACTCTTTGGATAAGCATTTCTATTAGCATTAGTTTGGATATTTGCAGAATTAATAAATGCTG---GCATGAGTCATAGGACCCTTATCATTTCCATTATGTGATATAAAACAAAGCATAACTGAATGGTCCATAGTGCTTCTGATCCTATAATGTGCATTATACAGGGTCATATCTAAAAGCCTAACATGCTTAAAATTAGTAAGGATTATTATATGTGTAGAATTCTACAGTTACGGTTTctgtgtcttgttttgtcttgtcattttgttttgctttgctttgttctgctttgatttttataatcagTGTATCAGCTAGCTAGcctaggcagcta----------ctttgaataaTGTCTCAAAGCAGATGCAGCCCTCAGGATacacagctctttttttttttttttttcagaaaaggaaCACTGGAAAGAAAgctgccctccctcctcctgaTGAAGGAGAAGCCCAGTGTTAGCACTATTTGGGCAGCTGAAGCACAGAT-----TCAAACTTATGTGTTCTCTTGTGCAGTGCA-TTATACAGCACACAAACTGCCCTGCTCTGTGTCGCTGTCCTTCAT--GTAACCCCAAAGATTCTAACCCT-TGGCAGTTTACAACCCAAACTCAGAGAAGTTAAACCCTTGAACACACAGCTCATGTGTCAGAAGGC---------------------------TCAGGATCTTGTCAGGA--TGCCCACAG------GGTTCATCACATTGGATGGAATCTGTTGCAGAAAATCTCAGATTTAATAGctgtaca------aaaataataatcaaga----------ttttagATCTTTCCTTGTCACTTGAGGCTTCATTATTTGAGTTTTACTGAACAATTATT-TAAGCAATGACTTTATGGTT---------TAGAATATTTTCACATATCTAGTCAgttataaaatttctgaaaagtgaAATATACCCAACTATCTGTAGTTCTCTAAAGGGGTCCCCAAAGTTCTTTTAAATTGTCATAAACAAT-AGCATAaacttttttctagaaatttttagTAGTTTTATACTATTCATCTTTTACTCTTTTCTAATTGTTGATTATCAATATTTTTACATTGTTGAAAAAGGTTGCATACAATTGGGTGctcatcttagaaatatcttGTCCA----AAAACTTAGTTGTATACATGAG

a score=38787
s chr3           157097430 1306 + 160039680 GTTTATTCCTCCACAAGGAAGATAAT---TACTTTCAGATTATTGAACAGTTCA--CAACAGAAAG-GCTTATTTGAGTAAACATTAAACA---TATTCTTCCCCAACAAGCCAACAATTTCTTCAACTTACCTGAA-----ATGTGATGGT------------ATGTAGATTTAATGATTAATAAACAATTCTTGTTCCCAGTA-TCCTATTCTCAATATGGAGGGAAAGGGGGCAGGGACAACTTTCAGTGGATTGTGGGGTATAC----TGATATTGTAGATACATAGAAAAAGAA-CAGTTAATTAGACTTTGCATGGGGCTGTACAGAGGTCATGGGTGAGA-TGACATCTGAGTTGTGATTGGAA-GGCAAGCCA------AGGAAAT----ATGGCTGTCAGTAGCTCTTTAGA-------------CTGCTTGGGTTAATGT-------CAAAC---------------ATGCTGCTCTA-TTATGTACTT-----CTAATCCAGCTACAAATTTTGAAAGCATTTTTTATTTTGTACTGTGAATGCATTGGTTAAGCATTATGAATAGTCTGTAGCAAACTTTCCCCTTATTACCAATTACCAAAGGAGGCCAGCAGCCCTGGAGGATCAAGCTGTCAACACTGGCATATGTAAAGTTCACGCCCAGGGTCCCAGCCCACCTGGCTAAGCTTGTTTTCCCACTTGTTGACATGAGC------------CAGACCCTAATGTTAATTTGTTTTTTGGGTTTTTTTTTTAATCTTTGCCATTATTAAAATCTGCTTTCCTGGGTAAGATTTTCTTGTTTCTAAATTAGTCTCTCCATGTTGAGCATTTCTGAGAATGAAGGACAGTATTTCTCTC--TCTATGGACAGCGAACCTAG-GGACATCTTCACAACTAAGCAATGAAGAGTGTATACTCACttttattaattttttaaattaaattaattttttttGTTTACTTATTCACTTTACATCCCGAACACACGCTTT-TATTATTTGTTAGTGTGGTGTTTATAGATAAAACTGAGTATTTAACTCCCTAAAGAACAGATGTATAGCAGAGAATGTCATTTTGCTCTTGGTCTTTAGGCTTTTT-----CCCCACACTTATTACAGTTTTTGTAAAGGTCGAGACGGAATCCCTTTGAACCATTGTTAGCTCCCAATCTCAGCGCTGGTCCCTGTGAAGAAGCATCAGCTTGTGTTTGCC-TTTGACGATTTTGCTCTTTCTTTATACCATTGTGACTCACTGTCTGAGTGGGGAGCTATTTCAAGATGTTCTTTGTGGACTGCTGTCTCAGATCTCCTTCATCAAACTGCCCTGCTCCACAGGA-TCCCTGCTCAACACTCTTGCCTCCTTCTACCTTCCCAGTAACAAATCC
s HiC_scaffold_1 144274493 1325 + 233722169 gtttatttttattcagaggTGATAATAATTATTGTCAAATTAATAAGACATCTAGGTAACAGAAGGAGCTGCTTTTATGAAGAATTTAATAATGTATATCTTTTCCATGAGCAAATAATCCCCTTGATTTATAGCATTCTCTATGCTATAGACTATTCTGAGTAATATGGATCTAGTGATAAATAAACAATACCTGTCCCCAGTAAGCTTACTCt----------gtaaaagatttat--aaaatttacAATGCAATATGAGGTATGTATTATGATATTATGGATGCCTAGATAAAGAAGCAATTTATTATGCTTTGACTGGAGCTACGCTggaatcatggaagaaaatgacatTCGAATTGAGATTAAAATGATACGTCATTTGGCAGAAAATCAAAGTGTCTACTAATGAGACTTTGAATGTACTTCTAAACCTGTGTGGGTTAATATTACTGCTCAAGCCTACAAGAATGTATGATGCTGCTGTAGTTATTAATTTGGTCTTCAATTCAgctacagattttaaaaacatatctc-TTCTCTGTGGTGAAACCACTTGTTAAGCTTTGCAAATGGTTGGTAGCAAACTTTCTCCTCATTACCAATTACCGGAGGAGGTCACTCTCCAGGGAGGACCAAACCATCAAAACTGGCATATGTAAAGTTCACGCTCAGAGTCCCCAGCCTGTTCTTTGTGAGTGTTTTCCTACTTGTTGACATCTGCTCTCATCTCCTTCAGACCCTGACGTCTCCGTGCAGCTTG-------------ATTGTGGTCATTATTAAAATCTGCTTTCTTGA--AAGATCTGTGTGCTTCTAAATGCACCTCTTCATGTTGGACTTTTCTAATGAT-AACAACGTTGTTTCTTGCAAACTATGGTGACAAAAATTGGCAGGCATCTTTGTGACCGAG------------------------------------------GATTAGGTGGTTTTGT-----------------AGCACCAAAAAGCAATTCATATTATGTATTACTATGATGTTTAGAGATAAACATGAGAATTTAATTCCCCTAAGAGCAGATGTCtggcagaaatttttattttattcctgatctgcagatttttttttcccccagcacATATTACAGTTTCTGTAAAGGTCGGGATAGAATCCCTTTGAACCATTGTTAGAGCCCATTCCCAGAGATGGTTCCTGTGAAGAAACATGAggttttgtttgccttttaaaGAATTCACTAGTTCTTTATACTATTGTGTTTCACTGTATGAGTGTGAAGCTATTTCAAGACATTCTTTGTGCACT-CTGCTTCAGATCTCCTTTATCACACTACAGTGGCCCACGGGGTTCCTTGCTCAATACTCTTGCATCTTTCTATATTCTGTGTAACAAATCC

a score=20275
s chr3           157100512 1211 + 160039680 CCTTTGTTTGTATAAGAGGCCCACAGGTTCTTTGAAAGTTCCTCAACGGTTCAGAACATCACAGTGATT------CCTTTCAG---AGCAATGAGTTCTGTATTCTGTCTTAAGGAGGACAACTAGTAAGT---CCAGAATAAATGAACAGAAGTGCACTCAATACATGTAGTATACTTCCCTGAGTGAAGCTGACC--TGTAGTTTTGCCTCTATAAGTGAAGTTTCAGTTGAACATAGCCAAAAACATATCTGAAGACTCAATTGACAGATACACAAATTCAAGT-------GAAGAGCTGGCAGTGATGGGTGGTTTTACTGACATTTTGACATCAGACTACACAATGTAGGATCTATTGTAC-TTCTTAATCATTGCTTATCAATAAA-GCACTTTGTCAGTGGAAAATCTTTAGTATTCCATTTCTCAACTCATCTGTTACA----CCCCTCTGTAGTTTCTGTTTGCATTGAAAGCCAGCATCCCACTGTGTCCACAC----CTCATGCTTAGAATTCACCCACTCGCTTTAAGTGAATCACTTGTCATCTTTGGTCAGGACCAATTTAAAAACTGTCTATCACATGACCTATTTGATATCAA-CTGCCATAAATCTCCTGTCCTCACTTTAGCCTTGAACTGCTTTTCTACACAGTACTGACCATGCTTGAGGTGCAGAAACTACACAGTCAGAACACCTC-AAATAGACAAAGGGTTGGTAT-CATTGTGAGGTTGAA---TGGGTTATACATGTGGTTTATTCATTTATTTTATTTTATTTTGGACATGCTTTATAT---TTTTAGAAGTTGTAGGTATAGATGAATTTTTACCCAAACT---AAACAGTTTCTACAGACCTGTTCACCCTATCTCCTTGTTTCCAGTATATTAACTCTCAAATCATAGTAGCA------TACTTGTCATAGTCAGTGAACTTCCATTCATACATTCATAGTAACTAAACTTACGTTTACTTTAGAATCATACTTAGTGCTGTTCTCATTA-GGGTTTCAGTGAAGAAACAATGC-TAGTTTTTAGCAGTCCACAGAATGGCATTGATGc----------ccctgggagccacatgttcagcctcatctc-------cacca----ctgcacactgcagc--------------------------tctttctacagtctctatcgttttaa-gtgtcgcagactttagataaacacaaaccacaca----tcgtctgttcagaccactttcttgcaattggtttcatgcatttaactgtgttatacctttttgtgtctcaatgg
s HiC_scaffold_1 144277327 1249 + 233722169 CCTCTGCTT--AGGATAGTTCCCTAACTTCTGTGTAAGCTTCTTTATGATC--ATATTTCACCATAATTTTTAAACCTTCTACCTCACCAATTAGTTGTGAATTCTGCCTAAATGATGATACTTAATAAGTGATCTTTAAATAATGAATGCAAG-----------CATCTTAAGCTTTATTCTGAATGGAATTAAAGAGTATAGTTTTGGCTCCATAAGAGGAGTTTCAACTGGACATAAGTAAAACCACAACTGGAAATTCAACCAGCAAACTCACAAATTCAAACACATACAGATGAGCT----GTGTTAGATGATTTGACCACAGCTTTGTGATTGAAGTTCACTATGTAAAATGCATTCcatgttttctgtcattacttaTAAGAAAACTTTCTTTGTCAGTG----ATACGTTGTATCCCACTATTTAACTTGTGTGTTAGACAGTCCCCTTCCTAATTTACGTTTTGATTGAAAACCAGCACCCTACAATGTCAACACTTTATTTATGCTTAAAATGAATCTACTTTCACTAAAAGTATCACTTGTCATTTCT-GTCAGAATGAGTTGGGAAATTATCTATCACTTGACCTATTTAATATCAACCTACAATAAATCTTTCATCCTATCTTATTTCTGGCACAGCCTTTACACACGCCACTGAATACATTCAGTAAACAGAATATAGACTTTGTCTAAACCTCAAAACATACCACAGAATGGAATCCATTGTGAG--TGAAGCCTGGATCATACCTGTAAGTTA---------CTTAACTTGCTTTGAATATA-TGCACATAAATTTTAGCAGTTTTAAGTCTAGAGAAAATTATGcagaaattctaaaaaaattCCCACAAATCT-TTAACCC------------------AAAGCTACTTTCAAACATTGTTAGCAATTTTCAATTTGTTACAATTAATGAGCCAAAATTGACACGTTAATATTAACTCTATTTATATTTACAAAGGGTTCAT--TCAATATTGTGCATATCATGAGTTTTGACAAAAAGATACTATATAACTACCAGTACATTATGAAACAGAACAATTTCTCTAAAAATACCCTGCATGGCTCACATTCATCTTCACCTTTCCCTAACACCAATCCCTCAAAACTCTAAcaatgagtgatttttttttatgagtGATCTTTTTACTGTATCcatagttttgctttttcagGAACACCTGAT-AGTACAAATCACACACATGTAATCTTTTCAGA-------CTTTCAGTTAGCAATATGCATTCAAGCTTTCTCCATCTTTTTGTGTCCTGATAG

a score=28013
s chr3           157105488 911 + 160039680 ATATCTCAATAAAGAAAACAGATAAAGATA----------AGTTATGAGTTTCTGTTTG------TTTGGGGGGAAGTATTTTTAAGATCAAGTTAAGAATGCATTATCTAAACAATGTTAATATTTCCCTTGGAGGAAC----AAAGTCATTTCTTACCTAATTATCACTCTAGTTCCCTAAATAAAGATATTAAGCAGAGAATGCCTTGAATCATTAAGAACCACCCTGAGCACACACAGCTGCCATTAGCTGAGATCCACTCTTTAAATGGCCTTTCTTCCCTACACC---AAATATGATTTTGTTTTAGAGAACACATGATAAGAGGACATTTACTTCAATCAAAGCTGAGGGAAATAGACCTTTAAAAACAAAGCCCCCGTTGTTCAAAGTTTGTTTTTTTGAAATATTCAAAGCTCAAAAGAAAAAAAAAGAAACCTTCATGA------AGCAGAAAGC---TTGTTTGACCTTTACTCCCTAA--CCGTGATAAAAACACGGGTTCTTTTGTAATAAGGCAGACACAGGCTACATTTCAAGATTTGTTATTTCTGTAATTCCATGTTGACAGGTTCAAACTGAGTTTTAAAATGTGATACTCGTTCCTACTAGTTCTAAGTTCTGAAGATAAAGAGCTGGTGTGTGCAGAACAGCTGGATCTAATTAGAATCCAAACTTCTGACTCCATTTGATCCAACTTCCCCATCTGTCTGGAGTCATTTCACCATAAATAGTGCAAGCTCTTAATTCCAGTCAATACCAG----------------AAAACCCTGATAATCGCAGATCCTGTTATTCA-GGGTCGCTGACATTTCTGTTGATCATCTTAGCATTT-TACATGGGCTG---ACTCTGCAATTTAGAGTTTCCCCATCAATGACCAAGGAAGAGGGAAACAAGGATTTCGTGCTATGTAACTGTGTATTTGTTTTTAAtggggatat
s HiC_scaffold_1 144282294 934 + 233722169 ACAtatcagtaaataaaa----taaagatatttgctACCTAGTTATGAGTTTCTATCTGCTTTACTTTTtgcaaagttgtttttaaaattgcatgAAGATCATATTATTCAAATAATATTAGTATTTCctgcagagaaaagcaaaaaatcatTAGTTatctaattattattttattcctctAAATAAAGATATTAAAAGCCTAATGCCTT-AGTCATTAGAGACTT------GTA-ATACACCAGAGTTTAGCTGATAACTGcagttaaa------ttttttctttgtacatgaaaatatcaaaactttTTGGAGTGTGAgtgatattattattttcattttaattgaagTTTAggaaaatacaacttaacaaaccaAACTTTTTTGGTAGAAAGTTT-----CTTGGAGTACTTGAAGGTTAAAAGAAACGCAAC-CAACATTCATGAGTAACTAGCACAAAGAAAACTGTTACAACCTTTCTCAATAAGACCAGTTGAAATGTAAGAGTTATTTTGCAGTAAGACAGCCACAGTCAGCATTTCAAAACTTGCTATGGCTGTATTTATATCTTCACAGgttcaaact----ttttaaatgtgaaaCTTGTGCTTACCAGTGTTAGGTCTTACAGATAAAGAATCAGCTTCTTTGGAACAGCTGGATCTAATTAGAACCCAAAGTTCTGATTCCACTTGATCTGATTTACCCATCTGTATGGAGTCATTTCACCATAAATAGTGTAAGCTATAACTTTCAgctcaaaccagaaaaaaaaaaaaaaaaaaaaccctgataatCATAGTTCTTGTTATTCAGGGGTCACTGAAGTTTCAGTTTAACATTGCAGCATTTCTGTGTGGGCTGTGTTTTCCATGGTTTACCATTTCTCTCCTGATGacta---aatggagaaataaggttttTGTATCTtgcatctattt-taaatttttaattgaaatgt

a score=22010
s chr3           157108254 684 + 160039680 AGAAGTTTTCAGTGGAAATCCAGACACTGCTCCTGGGTTGGACAGTGAGACTGCGCA-GTAGACACTGAGCCACAGAGTGCTCCGCTCCA--TCTTCTCCAGGCAGAGAAAGCAGAATTAGAAGGCAAGCCTCCAA-CTCCAGCTGAATGCTGAATGCTTGAAGCCTTTCAAGG------------TTGAGTAGACT------CCAT---TGTCTcctggatgaatcacttgccttctctgaaactcagttttgccatctttaaaatgagaggACAGAGATGAATAAACAGAACTCTTTGCTCTCATAAAGAATATTGGGTTTCATATGCATAAAGTTTCATTCTCCAGTTATGTTTCTAGAACAGCACTGATCTTAATTTAAGGAAAACAAGAT-CTGTGTATCCCTGTATATGCAGCTTAAGGGAGTTGAACCACTTTCTTCTACCCTATAGTCAGGTGACTTAGAAACCAATCttttttttttttttttttttGCCTTAAATTGAATTTTCTGAACAAAACTATTTCTTGGCCAAGATGATTTATAAGATATTTT-AGACCCTAAAGCATTCT---AAGAAAGTCATAAACATCTGTGAATGGAGACAGTGCCAGCTGACTACATATTTCTTTATCTCAAGAAAAACCTGTGGGATATGTTAAATGCCATTTTTCATTGGAATGGAAAAGCCCTTCAT-----TGTTTTTCCACAT
s HiC_scaffold_1 144284623 682 + 233722169 AGAAGCTCTCTGGGGA------TGCACTGGTCC--AGCCAGACAGT----TTCCACATGAGGAAGCTGAGTGGTTAAGTACTCTGCCGAGGGTCTCGTCCTGTCAAAAGAGCCAGAAATAGAGTCCAGGCTCCCGATCCCCTGTTCAATGCACCCTGCACAA---CTTTAAAGGACCAAAATATTTTTGAGCACAGTGACAGGTTATGCCTGTGTCTTGAATGAGTCATTTAACTTTTCTGAAACTTCCTTTTCTccactttaaaataatagaacc-agataaacatgaaaattattttgCTCCTACCAAAATTATTGGATTTCACTTGTATATAGCT-CATATTCAAGTT--GTTTCCCAAACCATGCTGatcttaa------aaaaacatttttctatgtttCCCTGCATATACACTTTGAGATAGCTGAACTGGTTTCTTCTACCCTGTGGTCAGGTAATTCAGAAAc------------tgttctggtttttgttttaaattgcattttctgAACAGAATTGCGTCTTGGCCAAGATGATTTATAAGATATTTTTAGACCCCAGAGCATTCTTTTAAGAAAGTTATAAACATCTGTGCATGGGGACAGTGCAAGTTGACTACATATTTTTCTGACTAGAGAAAAACCAGTAGGCTAGATGAAATGTGATTTTTCACTGGGGTGAAAGAGATCCTCGTATATATTCTTTTCCATAT

a score=35720
s chr3           157112128 2643 + 160039680 aaaaTGTTGCCATAGCAAACTTTTCCCAACCTTGAGCAAACTATCGCTTGTATTTTTACCA-TATAAGGTGAGGATGCGGAAAAAAGAACATAATAAAATTCTGGGAAGTAATTCTTCTTTCCTATTAATATTGCAATCCAGAATTGTATGCCCAAGGTTCATGACCTGTGCAGCACAAGGCGGCCAGGCAGTGATTGAGCACGGAAGTTCACGGTCATTACTGAACTTCTCCACAGCACA--GTGCCAGCTGATTGACACTGATTGAAACTGAATATCCATTTTTCCTACTCTGTGGAATCTGTCAGAGGACTAAGGACATCATGGATTTATATGTGAGCCTCTTATTTCTAGTATATTCTTCAAATATCCAAAACTACCACACTTTG-CTCTTTCTCAGAAAGACACTAAATCTTACCAAGGGTTTCAAAAATGGGTCTTTTGAATATTAAACACACACACACACagagagagagagagagagagagagagagagacagagagagacagagagagacagagagagacagagagagagagaTCTAAGGTA--AACTTATTTCCCTCATTTATTGCTGCA---TAAAAATAATTCTTGAAAGATGAATATT--------TCAGAAT----AAAATCCCGGAATGTGTAGGACCATATTGTGTTTTGAAAATAGTACCATGAAAGGCGAAGTTAGTGG--TGCTAACTGCAATTCCCT---AAGCCTCAATTGTCCTCTGCA-TCAAAGATTCAGCTTTCTGAGGAATTACTGATGTCCTGGGTACTTAGGGCACCA---TGCTGTGCTTGTGCTCAAAATGGAGGACTTAGCCTATCTAACCCTCAACAAGGAGCACTTCCTGTAATGGATG---AGAGCAATTCTATGTG---------ATTTAAAGAAAAATAAAAAAAATATGGTTTGTCTAAAAATAATTCCCAATGGAAATATAATCTAAGACTTCTCAATTTGAAAAAAAAAAAAAGAAGAAGAAGGAAAAACTTGACAGACCACTGCATAAACCCAAATTTCTACATGTCAGTTCCTAATTT-------AGGATGAGGGCTGGTGCCTA--AGAATGCTTCTGGACTGACTGTCGAGGTAGCAAAATGA---------ACAGAGTTCAGAGCTATGCACATG----TGGGAAAGCCAGTGGGTGAAT-------------TAGGATTCAGGG-----------------AATTGTTGAGATTGACTCATTTTCAATATCTACAAAGAAGCCAGTCTGGGGAAGTCAGCAGAAAAGCCTTTTGAGTAAGGACTTCTCTGCTAGTGGGCACA----CAGAAGGCTACCAGGCCTGGTGACAGTCCTAAAGAT---------AGCAACTATGCCAGGCTCGAGGTGCAACACTTTGGAACCTCTCATTATTGTTCAAA-------GAAACACAAGCACTGAGACCTGGGTTGTAAGTACCTCTTTAAAGACCCCACACC--TTATATTCATTCAA----CAGACTCTTATTGATAACCTGATAGATGATCAGGGTATA--------------------AAAAAAGAAATGTCTTGGCCTAGTTTCTTGGAGCATTCACTATCAAAAGAAGATgaggaggaggaggaagatgatgaagatgaggaggagaaggaagaggaAGGT----AAAGAGAGTAACAACAGTGAGTGCTGCCAATGAAGAGAAGGAAGAGGAAGGTAAAGAGAGTAACAACAGTGAGTGCTGCCAATGAAAGCCaagcaaaatataaattatatactaggaagcaatgggtattatgggggaaaatgtatagaacaatca--agagtaacaagatgctggggaagagtgtgccatggactcctcaacacgggatcattgaaaaggtatatctgagcagggacgtgaaagggaggctgttggtggcctggctatctggggaggccattcccacttcagggataccccgctgccaagatgcaaagctgacctacatgagctggacagcaatgaaacgtgattaaggagcagcagaggcTGCAGGTCATAGGCAGCACAGTGCTGGATTGGGAGCTATCAGAAGGCTGTCAGCTTTTGCTCCCAATATCAAGTAGCACTCACTCTGGGTGCCTGGAATGGCATCAGTGCTAGAAGAGAAGAACACCCCACTGTTTGTTGTTCTGTTTCCTGTGGCTTTTTAATGGTTTTCATCAGGAAGCTTACGATCATGTTTCCATATGTAATAGGAACTGTCACCAGTTGT---TTATGCATTTAGATTTGATTTTGTTTTCTACAAAAATTCATGAGGAAAGCTAAGAAATAATTTCTACTAAC--TTTCTATTCCAAAACATGCCAAGTATCAGTCCTGGAGATTTTCTGCTGGCCCTCAAATGGCGCTGGATG-----GCTTATAAAGTCTTTTTGGATTTAGGGAAATTACGACATTTGTGAGCTTCAATTCCAAGAAGCCTGGAATTTACAAACTACAGCAACCACCAGTGTGCATGGACATTTGT----------TCGCAGAAGCAGCTATCTTAAAAACAATGGTGTCTTGCCTCTCTTTCTTC-------TGATTCTCCCCTGTGCCAACGCTGCTTCCTAGAAGAGTTTTTGAAAACACATTGCAGCAACATAATAAGCTGACATGATGTATGTCTCTCAGACAACAGCCAGGTGGAGTTAAAAAGCTGGTGAAATATTTGTCCAATTATACTTTTGCAGTCTGAATTTTAACTGTATTCTCAAAGTCTACTACTAGTTTGTGAACATTCCTTTTTTTTT
s HiC_scaffold_1 144287153 2470 + 233722169 AAAATACTGTACTGGTAAACTTG-CAGATTTTTGAGCAAACTGTCACTAGTAGCTCCATTACTGTATGAtaagaaaaaggataaagaaaaagcatATAATTCAGAGAAGTAGGTTTTCTTTCTTATGAATGCTATAATCCACAAATACCTGCCTGGAGATCATGATCTATTCAATGCAAAGAGGC-AAACAGTGATTTAATACAGAACTTCCCCATCATTACTCAACTTCCCTGAAACCCAATGTGTCATCTGATTAACCCTGATTGAAATTTAATACTCATTTTTCCTACTCTGTCTTATCTGTCAAAGGGCTAAGGTCA-CGTGAAGATAAATGCTAGTGTCTTACTTCCGGGATATTCTTCAAATGTCCAGAAACTTCAGACCTAGTCTTTTCCTCTAAAAGAGATTAAGTCTTACCACAGGCTTCAAAAATGGTGCTGTTGAgtatt---tttttacaaaaac------------------------------------------------------------------agaaaaagtcctAAGGTAGTGATTTATTTCACccgtttattattttattttaaaaatcattcttgaAAGACTAATTTTTTCTGCTGTCAGACTAAGAAAAATCTCTTAA--CTCAGGAGTATATTGAATTTCTAAATTa-tcttatgtaaataaaatttaaggggTTATTAATAGCACTATTATTAAGAGTCCAAATTTGTTTCTTCAgtcaaatattaaatttttggAGGGGTCACATCTATTC----TATTTAGCATATTAAGCAGCTATACTCATTCT--ACATGGTAAGCTGGATTTCACTAATCATCA--AATATTCATTCCTTGCATACTATGTGCAAAGCATTCAAATACAAGtacttatatttttcaaaaatcagaaaatatatgcTTGCTTTAAACATGATCTCAAATTGGAGCATACTTTAAGACTTCTC--ttcaaactaataaaataaaag-----ggaaaggtcTGATTCAACAATG-----ACCTATAT---TATGGATTGGTTCCTAATTTGAATCTGAGGATCAG----AGTGTTTAATAAAATACCGTTATGTATATTGTCAAGGTAGCAGAGCTATACGCAATTGAAGAGTTTC-AGGTGTACAAATAGTACTAGGAAAGCCAATAGCAGAATAACTAAAGAGTGACACTATACAAGGGAAGAGTTGTGGTAGcaaattttagagatt--tttatttACTGTGTATGAATAGATACTAATCTTGGGAAATGACCAGAATAAGTATGCAGATAGAGTTCCCTCTGGTTCTAAAAACAGTAGAAGAAAATTTCTAGCACCGGCGAAGATCCTAAGAATTGTTACTTCAATAAGTGTTCCAAACTTGATATTATGCACCTTGATACTTCATACTTTCATTTATACGATGTGGAAATA--------GGAATGTGAATTTTAAGCACCTATTCTGAAACCACTCACCCATGATAGTCATTCAATAGCTAGGCACTGAGTGCTTACCACGTACAAGACACTGGTATAGGATCTTAAGacagatgaacaaataaaaaagaccGTGGC-----TTCCTGGAGCCTTCCCT------------TtagcaacagaagaaagatagtAA-----AGGATTGgcagcaagaaaaaaatctaaaaataaattatgaatcaTGA--------AACAATGGCACGCAAAAGAAGTGCAGAAAGTG-AACACAACTGAATGT-----------------------------------------AGGGATTGGTGCT-------------TTTAGAAGAATTATCAGACTAAAATCTTGCTGCGG-----------------------------------TGAA-------ATTTGAACAGGGGATTAAAGCTGAGGCAGCTGACCAGGTGGCTA---GAGAAAAATATTCCACTTCCAGGAATGAGCCAGTACCAAGATGCAAAGGTGA-------GACCTGGATCATAA------------------------AAGct--------------------------attgtgaatttt--------tttaatcatttgttcCCAGTG-AATGTGGAATTCTCT-TGGGCAGCTAGAATG--------CTTGGCAGACAAAAACTGGGCACAG---AAAAATTCCTTTCCTGGGGCAGTGTAACATTTTTCCATAGGAAACATATTAT-ATTTTGTGTTAAGTAATAAAAACAACCATCAATTGTTTGttgttcatttaaatttaa-ttcacATTTTGC-AAAATTCTTGAGGATAGTTAATGAATGATTTCTATTGACCATTATGATTTCAAATCATGTCAACTACCAGTCCTAAAGGCATCCTACTTACCACCAAATGattctggatatttttttttgttagttcttattGGATTTAGGAAAATTacactatttctaagatttaattTGAAGAACCTTGGCGTTTGCAAATTGAAGCAGCCACCCACATGC---TACATTTGTGTAGAACATATTGGAATAgtgagaattttaggaacaatagta---TACGTCCCTTTCCTCTTAAGATTTATCCTCTTCTCTATTGATCCTGTCTCCTAAATGTAGGTCTTAAAAAACACCAGGGTAACAATATAGACTGCAGAGAAACACAGCT-TCCCACAAGAG---------------AACTCAGTGAATTACATATCCCATGTAACTTTCACATTTTGGCTTTGCAATGAATTCTCCCATTCAAACAGCACTTCTCCAACATCCCATTCTTTTT

a score=19609
s chr3           157115048 865 + 160039680 TTATCATTTCTCTTCATCCCATG-TTGAGACA-GTTGCAGTCGGTT-GGGCACTTGCTCTGCATCCCAAGCTGCAGTCAT--TAGTAGCAATGCCTGTTATGAAGGGCTGGCTTTGTCAGAGCTGAGA-GCCCAGCCCT-CCA--CTGCCCCAGCCAG--TCTTAGTGGA----GCTGCTCTTGGATGTGCGGGCAGGCTGGTTATTCTGCTCCTGCCTCTCATTTGAATAGAGGCCAGAAACACTGCC-AATTATATGATGATGACAAATGGGAGCCTGGACTAGGC---------ACCACACTCACTAGCCTTATTTCCTACAGCCCAGAGCATATGGATCACTCCAAGTAAGTGCTCAGGGAGTGCAAATTAGTGAACCTTGCAGAGAAGCCCAAATGAGCAAGTCTGCTAGT-TTGTTCCTGCTGCATGTCATCCT-GTCACTTCTCAAGTAACCCAAGAACATCTGAACTATTCTTATCCCAGGGCTCTGCTCA-AGAGAGGCCCTGTGCTACTACTGTAGACGCTTCTCAGCACTGAAGGGCCCTGTCAGCTGTGTGC----------------TACCTGCCTGCATTCCAAAGGACGAGTTG--CTTTCTGATGTCAGCCAGCCACACACCACACACACCACGACCATGCCCCTCTACACCAGAGCTAAACCT-GAGATCGGCATTTCCTCCATCCCCTAGACTCATTTGGGAAGGTCTGCACATTTAAGAGGTGTCAAGAGCCTTCTTCCTTTCTTCTCCTGAGGGT-TTGTGTTCATCTCAGCCTTATTTGGTTACAAATAAATGCCCTATGGCAGAAGGACCAATTTACAGCCTATAGAGAAAGCTGCCAGTACCATCCACTGCAGTCTCAAtgtacgtgtgtgtgtgtgtgtgtgtgtgtgt
s HiC_scaffold_1 144290468 865 + 233722169 ttatcaTTTGTCTCTATCCAGTGACTCACACACATCACCGTTGGTTCAAGCACTCATTCTTTCAGCCCTATTGTGGTCATCTTAGCAGCA--GTCTGTGAAGGGCAGCAGAATTTTTGGGCAGTGATACATTCAGCCCTGCCAGCCTAGTGCAGTCAACATCTCAGGGGACCCCACTGCCCCCAGACCTGCAGGCATGTTGCTTATTGTGATTCTGACTCTCATTTGAATAGAGGCCAGAAACTCTGCCAAATGATGTGATGATGACAAATGGGAACCTGGACAAAGCTATCAGGTAAATGCATTAACTTACCATATTGCCTAAGGCCCAGAGCATATGGATCATTTTGGG--AAGGCTCAGGGAACATAAATTAGTGAACCTTCCAGAGAAGTCCAAGAGAGCAGAGCTGGGATTCTCATTCCAGCGAGGTATCATCCTCGTCAC-----------CCCCAGAATATCTGCAGTATTCTTATCCCACATCTCTTCTCAGACAGAGGCCCTGGGCTGCAGAAAGTGAAGACTTTCACTTTTGAGATGCGTTGTCAGGTGTGTGCAAAGCAGTGTGCCCCACACCTGCCTGCATTCTACAAGTCAGGCTGCACTTACTTATGT----CACCCACGCTCCACTCACA----------GTGCTTCCTCGCCAGCTTCAAACTGAGCGGGCGATACCCGCTCCCACCCCAGCATCATTCTGTGACAATCTGGAGATGTGGAAG----CGGGGAAATTGTGCCTT-----TCCTAAGTGTGCTGTGCTCATGTCTGcctcatttga----aaataaa-actctCAGACAAGAGACCCAATTCAAGAAATATCAAGGAATTC-----TACCTTCCATCAAGCTTCCCACCTACACTTCTGTTAGCATGTGCGtgtttat

a score=13936
s chr3           157116347 882 + 160039680 ATGTATATGTACATTAGTTGTAACACACTGTCAGCAAGCAGTGGTTTTTCAATCAAATAGGCTGTCAGTCAAGCTGATCCACTAACAAGTACTCTGTCAAGCCGTGGCAGCTGCTGTCTTCACTACCTAAACAATGTGTCCTGTGCTAATGGTGACTTGTGTACTCCCGTTTATTACATAA-CATAATGAGCAGTGTCCTGAGAGGTCACTTCTCAGTTGGTGAATTTACAGAT---------------------GTCAA----AGCAG----------TGACTTTCTGGGGAGACTCTGGGTGAGCATTGCTTGG---TGGATACTTTGATTAATTATCCAAAAATGGGTACTCCCCTGCCACATACCTCACAGGCCTGGACTGAGATCTCGTGGCATACCCAGGCTTCCTCTAGGTAACATGGACTGGACTGAGAATACACAGCATATTTCAGGTAACATGAATACAAAAAATAACAATGTCTGTTTTCACCCTTCAAAAACCCTATGCCACAGTGGTTAGATATTGTCTAGTCAGAAATTCAACTTTTTGATTAAAAAAAAATGTTAAGTACTTTTAAGTATTTAATACATGAAGACAGGGATTCTACCTCCCATTTCCTCCTTCTGGCTCATCACATATTCCCCACACATAGCTCCTCTCAACCTCATGTGTTTTTTAATAACCCACAAAAACAGTACTTCCCATGTGTAATAAATAAGAGCTTAATTCTCCATCCTGAGGTTAGACAGTTAAGTTCACCTACCTTCTTCTGCTCCTAGGATAA-CTCCTCTAGCCCAATGCTGACTTGTTGCTGAGGAG----ATTCTT--AGTAGTGGCCACCCTGGGAAAGAATTAAGC--AATGAGAGCGTCTAGTTC-AGACACTTGGCACTTACAACTTCCTC----TGTTCTTTTTTTTttttt
s HiC_scaffold_1 144291459 721 + 233722169 ATACATATGTGTATCAGCCATAACGCACTGTCAGTGAACGGTGGTTT--CCATCAAATAGGCTGTCAGGAAAGCTGATTCACTAACAAGAAAGCTGTCAAGCTGTGACAGCTGCTGTCTTTGCTACCCAAACAATCTGTTCCCTACTAATGGTGACTTCTGCACTCCCATTTATTATACAGCCATAATGAGCAGTGTCCTCAGAAACACAGTCTGAGTTCGTGGATTGGCATACTAGTTGTGTGAGTTTTGCAAAATCAACACCAGCAGAATTAGCAGCTGGATTTCTGTGAAGATTCTGG--AAGAatttctttgttatggaagtggTAGGTAATTTTCCAATGGTCAGGAGTCATCTGCCAGCTAACCCATAAACCT------------------------------------------------------------------CATCTT------------------AAGGAAAAGAATGCCTATTCCCA-------------------------------------TCTATTCAT---TCCAATCTATTAAT---AGAGAGCTATTTGGTCAATCCAAGT----------------CAGAG------------------------TGGTTGACACTGTGTT-CTAATAGGAAG---Ctctcaa----------tttttaataa-------------------------ataataaatgacctCTTAATTTTCCATTCTGTGGTGGACCATTTAAGCTCTTCTG---TATTTGGCTATTGAAATAATTTCCTCTAGCATGATACTGACTTATTAATGAAGAACTTTATTTTTCAAGTGACTTTCTCCTTGGGGGA-AATTAAGCTTAGTGAGAACATCCAATTCAAAACACTTAACATTTACCAACTCCTCATCATGTTCTATAACTTTTGTT

a score=36389
s chr3           157118965 2071 + 160039680 tgttCTAACAACTCTCACCAAGAGAGAAACTTCCTACCCTTCATGGCTGCCAGAATATTCTGTTCATGTTGACTCCCTGGCTTCAGTTTCCCAGAA-GACTAGAGAAGGGTGTGAAGGAGAATAATTCACACTGACACTCTGAAACAACTTCTCTGTCACCAAACATTTTTTTTTGCAAGCCAAAGGCATTGTTTCAGCTTCAAGGGAGCCCCATTATCCAGGAAGATTAGAG-TCTGTACCACA--GCTCTCTACAGAGCCAAAACCCCTGCACACAGCACAGCT---------------------CTCACCATGATAATAGTGCAGCCATACATCAAGCATGAGCAAATCCCCAATGGAATGCATTTATTACATACTTTGCC----CACAGTGTGACCCATACTGGGAACTCTTGGCTGGACAGCAG-----TCACTCTT--------------------AGCATAATTGCAGATGAAATATCCTAGATCCATAGTTG--GCAATGAAAATATAATGTGAACAGAAGCCGATAACATATAAGGCTGGAATCAACCCACA--GAACAAGATGCATGGCTGTTCAGCCTTAATACATGATGTTTGCATGTAG--ATT------GAGGAGCAGTGGTCCCTGGGACTTGAATGAAATGCATATTATCGAGAGTGACCTATTTTTCCCCCTTGGCCAG-CTTAGCTGGCTTCATATCTGTCCATCTC-TTCCCTCACTCCTCTGT--GTACA-AGTAAGGACGCCTTGGATAAAGCATGCATCTCATGCTAACTCCTT-----ACCAAGGCTCATGGATGACACATGCCTGCCTATTGAATTCATAACACCCTACCCATACCACATTACTTGGCAGATCATAGATGCCTGCAGTCCAAACACAAGGGAGTAATGACCAGAGACTCTAA-TTCCCTCTAAAATGGTTGTGCTATACTGGTT--GAGAAAAGAGTTTAATATAATATACCTAGAGTCCAAGGACC-TACCCCACCTTCCAACTCATT----------------------------CCATAGATGTACATATTTGTACACACAGATATGgt-gtgtgtgtgtgtgtgtgtg-GTACGTGCTTCCTGCCACTGTACCAACATGCCATCATGCACTGTCTTTTGTAAGCCATCTGACACACAGACAGTGAGAAAATATTGACAGAATGTCTTCAGCAAGAGCAGCAACAAAAGAACCAGTCACAAACACTCGTGATGAAAAGGGACTTTGTTGAGCCACCTCTTTGAAGCTGCACACTGAAGAATTG-AGGAATACTCAGCAATCA--------------CAGCTGCTGAGAACAGTGAAGCATTAACCCACCTAGTGACAAAGCCTGTGGTTGGGCACAGGGAA-TTGTATGCTGACtttttttttttttttttttttttttttGCCT---------TGCACATCTGTTCATCTTCACAGAGATGGCTGCTATTTGTGTTGACTTGGCATCTGCCCTG-ATGTCAGCACTTGTGGTGCAGGAGGTGA--ACCTAAACAGAAGAACACAGGCCATAAAAAGCCTTAGGTTCTTACCAGGGGT--CTGCA---GTAGGACAGATGTGTTTTCATTCATGATCATTTATTTTATTCTTCTTTCTTGATACATGAAATGAATATAAACATATTTGTTCAGAAACAGGAATCTTCTCTCCACACTCAAGCACTATGCTATTATC--ACTGAGAGGTTTAATATAGGGA---GAAAGGTCCTTTAGAAGGGGGCCTCTAGAAAATAC--ACATACGACCTCTATAGACATGCCTAGAAACACTATCCTTGGA--GAATGTGGACTCAATTAAACTAAAGCTTTAGCTTCCGAAGAGTAGTAGTAGTTCATAAtg----tagct-ctggacactaaaca------ttcccctgcctcag--ggaaaatggaaatcatgatagtacttagtgaattgttgtgaaggctaggtaagtg---gacaaatgaaaaggcagatctatggcatagactaa--gctcagtccatgttCCTCGTA-------GCTCAAAATCCCTCCTGGAACATCAACACTCACAGATAT-----TATTCTCATTTGGGCTCTTTCTGGAAACAGACAT--GTTCAAA----TGCCTCCCTGTACTGCCATCTTTACCACTCTTCTGAAAGGACCACACCTTG---TCCTATGTTCTAGTAATGAATAAGCAGAATTATCATAGTTATAGAA
s HiC_scaffold_1 144292162 2128 + 233722169 TGTTCTA-TAACTTTTGTTAGGAAAAGAACTTCCTACCATTTATCGTTGCCAGGAT----------------TTCCCTGGCTTGAATCACCAGGAAAGATTAGACGAGGGTGCGAAGGAGGATAATTCACTTTGACACTCTGAGACATCTTCGCCTCTGCAGTGTATCATTTT----AAGCCAAGAGCATTGTTTCAGTTTCAAGGGAACTCTATGTTCCAGGCAGATTAGAGGTCTGTACCCCATGAGCCTTTCCTGAGCCAAA--TTCTGCAGACTATACAGCTGTCTTCACAGCCAAGATTCTTCTCATTGTGCTGGCAGTGTGGCGGCACATCAACTAAG-GAGAATCCTAAGTCGAATGCATTTAACTCATAATTCATTTCTGCACAG-GCACGCCACATTGGAAACTCTTAGCTACACCATAGCTCATTCACTTTGGAAGCATCACTTATTTTTGGAGAATAATAACAAGGACTATGCTGCAGGCCTGCCACTGTGGTGATAAACGTGTGATGTGTAAGGA--CAGACAACACATAAGGTTGGGATTGGCCAATTATGAACAC-ATTCACAGCTGTTCTGCCTTGATCCATGACCTTTGCTTATAGCCATTCTTGCGACGGAGCAGAGG-----------------AGATGGATGCTAAAATGAGTGGACTGCATTTTCCCCTTGGACAGTCCTGATTGGTTTCATGTGCTCTTGTCTCATTTCTTCACTTCCCTACTAATACATCATAAAGACACTTTGGTGGAAGTATACACCCCATTCACACCGCCTCTGATACTGATGTGCATTAGAGACACCTGGGTGTTCCT------------------CCCTTCCCACATCACTTTGCAGGTCATAACTGCCTGGAGCCCAAACACAAGTGAGTGATGGCCAGCGACTCTCATTTCCCTCCTCACCAGTGGTGTAGTATTTGTTTCGAGCAAGGGTGTTAATAGA------CTAGTGCCAAAGGACTGCACCTCAGTCTTCAACttcctgaacacacacacacacacacacacacacacacacacacacacacatacacacacacacacagtcacacacacacatgcatgcacgcacacacgcacttCCACTGTAACACTCAACCATCAAACAGACTCACCCCTAAGCCATCTGAAACACAGAC--TGAGAAAATGCTAACAAAATGCATCCAGCAAGAGCAG------------------CAAACCTTTGTTATTTGAAGGGTCTTTGTTGAGCCAGCTCTTTGTAGCTGCACCTAGAAGAACTGCAGAAATGCTCAGTATTTGCAACATCTTTTCTTCAGCTGATGAAAATCAAAAACCATAAGCTTGCCT--CAACAAAGCCTGTGATTGGGCACAAGGAATTTGTGTTGTGTCCCATTGTTCTTCCTTTTACACATCTCTGCATCTTCAAATATGCACAAGTGT---TCTTTGCAAAGATGGgctgtttttctgtttatttgcctTGTGCTCTACACACCAGCACATGTGATAGAGAAAATGAGTGTGTGAACAGTTACCTGCA---CATGGCCAGTTTTG----TCTCCCAGGGGTGGTTggatttggaggacaggctgattCTCAACCGTGGCATTTAATCTTATTCCTTGCCTTTAACAAATGAAATGG--CTGAGTTTACCTATTGAAAGCTACAATTTTTCCCTCCATTCTTAGATAATGTGGTATTATTTAGTGAAAAAATTCTGCATAAGGGAACAAAAGGATCTTGAAA----GACATACAGATAATACTAACAGCCAACC-AGGTGGACATATCTGGAAACACTACAGGTGAGACGAAGGTatac-------aaataacatttt-ttttctgagaaagagAAG--GATTATTATGCAAATAGCTGCCATCTATAAGACAGCCTATGTCTCCTGACTCAGGTGTAAAACGGAAGCCCTAATAGTGTTCACAGAGCTGCTGTGGCTG-TGTGTTAGTGTGTGAAAAGTGTTTAGGGTAATTTCTAGCACGGAATAAGCGCTCAATCCCAGTTATTACCACTGTTCTGTTCACACTCTAT-TTGAAGAATCAAACATCAAAAAGACACTTATAGTCTTATTTGG----TTTCTTGAGCCAGATACtagttaaaagttttattttctgattctctaGTAGTTATAACAATCCTACA--------ACCTTGCATTCCTA--TTTTACTACTAATTAAATAGGATTAAGGAGGTTAAAGAA

a score=28299
s chr3           157133826 1599 + 160039680 ATGGAATAATCTA--GAAACTGAAA-TGTAACTAGATGAAATTTGGCAAAAGCAAAAATATGTGGATACCGCTT-TTGCCG-TTTGTGATTAATTTTTCGCAAATATTTGTTTAATGAGACAATGTGGTTAATCACTCAGGTGAAATTTGAAGTTGCCACCACTGAGTGAGTGATGGTGTAAAAGCTAAT----TCAGTTCGTTATCATTATGCACATGCTAGTGGTAATAACTTATTGTCCATACCAAATCTTTATAAGCATTGTAATTAAATATAAAATGCACATTAGAATTATTATGAGTAATTAGGGCAACATAACAAGTATGCATGGAAGTCCCAAAGCTCATTAAAACGTTAAAAGACAAAACCTGTTCTACCCAATG-TTCATGCATATTCTGCATAAATAAGTCAATGCTCATAATC--TGAATT---------TTTTGGATTTTTATGAATTATGAATGTG------------AACATTTAGTTCAGTTACCAAATACAGG-TTTATTTCCACTTTGGGAAAAAGTAAGAgacctgtgtgtgcatttgtgcatgcacgtgcacacacacacacacacacacacacacacacacacacacgcacgcgcgcgcgcgcacacacacgcacacacgcacacacgcacatacacacatgcacactacatcagATCACAGTAAGATGTATTATTTGAAACCATGGCCAATATACCTCACAGAACTCTCTCAGTATGAACAATGTTAGACTAgggcctggagatataggtcagcagttaaggatacttactacaaatgactggagataagttctgagatacatggttcttaatcaccagaaattcaagttagggtgatcagtgccttcttttggcatccatgggcacccactcatgaatgtacacaaatgcaggaagacatatatgcataatctttaaaataaaaTAATGAAATAAAATAATTCTTAAAGAAAATAATGCAAAACCACCTTGGGCCACTAGGCTGTGGGTCATCCATGAGACCAAGGACTTGTAGATGAAGTCAAGTGTGATCATCATCTGGCCCCGCTT---CATTGTCTTGCAACATCATCATGCACGTCTTCCATTATGAACTT-CATATTACAATA-TGGTGAACTCAAATCCAG-------ACTGAGCACCT----------ACATTGGAGACAGAAACAGTGTGGCAAGAGTGGAGTACCACCGCTCA-----CGCAGCTTCATAAGC------AAACAACTTGCTTCTAATATCATCATTGAACAAAGG-------CTGGGTTTAAATTTTCACCTTTCAGTCTACATATAAA-GGAATAGATTACCCAAATTAC-AATATATTTCAGATTCAACTAAAGGAAGGGCTTTTGGGTCAGAATAAAC-TTTATATCCTTAACAAGTATATCCATTTATTTAATTACAATATTGCTCCCTATTTCTGGAATATGTAGTGTCGGGAAAAGCTTCAGCTTTAGAATCTCAAGTTTAGATGAAATTATAGGttaataataactata-----------ataataaaaaataataaaaaatta-aatCTAGTTATTAAGCATCTTTGGGAAATGTACATTATTATAAAATGGCA--GTTATACATATTAAAGCATACAATA-AAATGAAGTGGATTATTATCT---TACTCTTTGAACACAGT
s HiC_scaffold_1 144302688 1315 + 233722169 ATTGAATAAGTTAAGGgaactgaaaatgaaatttgatgAAAATTGGCAAAACCAAAAAC---TGGACGGTGCTTCTTGCCAATTTATAATTAATTCCATGCAAATATTTGTTTAATCGGACAATGTGGTTAATCACCAAGGTGAAATTGAAAGTTACCAACATTGAATGC----TGGTATAAAAGTTAATAAATTCAGTTCATAATCATTATGCACATGCTAGTTATAATAATTTACTGTCCATACCAAATCTTTATAAGCAttgtaattaaatataaaatgcacATTAGAATTATAATGAGTAATTAGGGCAACATAACTAATATGCATGAAAGTCTCATAgctcattaaaatgttaaaagacaAAACCTGTTCTACATAGtgttttttgcatattttctatagctaaataaatgtcagtagtctttgtattgttttaccatttttggtttttatgaaTTATGCATTTGAAATTCACTGGAAACATTTGATTCAGATACCAAATGTAGACTTTATTTCCATTctagaagaa--------------------------------------------------------------atagaaacacacacacatgcgc--------------------------------------acacacgtGCACACCATATCAAACCATAG----------CATCAGAAGCTATGATC---CCACCTCATACGATTCCTTCAGTCAGAGGAACATAAGCCCATCG----------TGGGTCATTA---------------------------------------------------TTTCAATCA-TGGAACTTC-------------------------TTGG---------------------------------------------------GCGGAGTCTTCAGA------------------------------------------------------------------------------------------TTATAGAC----TCAATAGTGAGTGTCGTCTTGACCAGTCTTTACACT-TTTTATGACATACCCACAGTCTCCTACTACTATGAATTTCCAAATTTAAATACCCACGAACTCAAATTCAGAGAACTTATTAAGAACTTAACCATAATAATATTGAAAACAGAA--CGTGTTGC-------TTCTAACATTATTCAGAAACCACACATTCTTGATCTTTTGGAGACAGTTTGCTTTTTGTATGTCCAGTAAACAAAGATCAACTTTTTAGTTTGAAATCATTTATTCTAGTTTATATATAAAGGGAGTAGATTATTTGGGCCCCtaatacattttagatttaaCTAA---TAATGATTTCTagtagaaataaatgtttatatccTTAAAACACATACATGTTTATCTGA-TAAAATATTACTCTGCgcatcttaaatatataattt----------ttcaactGCACATTTTTAACTGCACATTAAATTATAGATGAAACATGAATACACAGAAGTTGTTACATTTCCATATCTTTATTTGTTAGAATTTTTTCACTAAAgtgttttgagaaatata---tgttagaaaataacattattataaatatttaaccaCATAATACAAATGCATTCCGTCATCACTTGTATGAACCTTGAACACAGT

a score=12825
s chr3           157139765 1434 + 160039680 TTTCTCCCGTGAAAAAGAAAATGACTTCATCAAATGCTTAACTGAATCAATCAGTGCATTGATTTTGAAATGTCCAAGCAAAGGATCCCCCACCAGAATGCAAGTCTTTCTAAAAGACAGACTTCAGTGCTACATGTGTTTTTTATGTTCTTTTTCATTTTGAAACCCAAATACTTTATTCCTTGGCTGAAAAAAATGTAAGGCAAAATTTAC----CCTC----TCTGCCTTCTAAAAAGACCA---ACTCTCTCCTAAAAAGCAGA----ATGGGTGTGGAATTCTGGGAAAGTAAAAAAAAAAAAAATCCTAGACCCAACTTCCAGTTGAGTTAATTACTGGTTTCTTGTCTAAGGAAAGCATGCTTTTAAAAATCAGCTCTGCTTTCTATCGGCTCCTTGACTCAGTCTGTGCTCAGTGAGGGCACATGGCTGGGGCTCT-TGTTCCCCTGTGATAACTCCTGCTTTAGATAATGTTtttattgacttctaactcagagcaaaccactaagctaag--ctcttctgggatcttcttatattgcctggacagcagtttggggaagtaggaagcatttattttatagatgaagaaattgtgatttagaaaaattta-acttAGTGAGTGCTAGAGCCACACATG----AGTGCAAA-TGGAGGCTTCTTGTCACAT-----ATTTCACCACTGTCTAGAA----GTTTAATCTCAGAGA-AAGTTGGAGG-------------AGAATGTTGGC------------CAGAGGTTGAA--CAGTGCTGACATCCTCAAATCATGTGAACAAAGATTCAACTGTATCTTGATGATTTGAATTTTTGTTAGCATTATGACGATACAAATTCTTTAC-------TTTTTTTTATCAGCAATAACATGCTAAATTCTTGGCTCTCTTTGAAGTTAGAATGGTTTATAAACCAAGGAAATATTTTCTTTT-----GAAGTTTGCTGATCTTCTGTT-----CTCTCTGCATGAATCAAT-AGAGCCTGAAATATTGTTGGTATTTGT-GCACTGAGATTCTA-CTGTCTTCAGAGAAAATATTTTCAATTATCATCCTCCTCACTGTGATGGCAAAGGTTTGTGGTACAGCCACACGTTATGACATGTTTCTAACTGCCTGAGGCCCTTGATTAGAATTATACCACTGCCTGTATACATGTGTCTGCCcacacacatactcctgtctatgcacagacacacatagatacacacacactcataaacatgtacaAGGATTGAAGCTGTCTTCTATGTTGTGATTTC----TGGAATCTTTGATTTATTTTCAAACA--------TTATCTGAGCA------CTTTATTTTACTCCATGAATTCTGGAATTCAAACCAAGGGCATCATTGTT--------------TCACTTCTGTCAAGAC--GATTCTTC-CTGATAAGCTCTTCTTTGGGAGACCTACACTTCCCATTCCTTTTTGGGCATGCTTCCTTATTGCAGTTATTCAATGTTCTGCCCTCCTGACACTGTTCATCGTT
s HiC_scaffold_1 144309627 1409 + 233722169 TCTTTGTTGTGAAAAAGAAAGTGACCTCATCATACGCTTAACTGAATCAA----TACATTGATCTTT-TGTATACCAAAAAAAATTCTGCTGCT----TATGAGTCT-------AGAGAG-----------------GACTTTCATATTCTGTCACATTATGAAATCTAGACCTCATACTTCT----TCAAGGAAAGATAAGATGAAGTCTACTATATCTCCACATCTGCcactcaaaaatattatttattaacttCACTAAAGTAAATTCCATACAGACAGAATTCTAGAAGACTAAAAAGTATTATG----CAAGTTCAGGTTTTAGCTCAGTTAAAGACGTGCTTGTAATATCAAGGCAATGAATTACAAagaatcagttttattttctgtcttgt-cttAAATGATTCCACAATTTTGCAAGAAGCAAGATTGTGCTACTCTATCCTTTTGTAGAAAGTC----------TCATTTTTTTATTGACGACCAGCTCGATGCAAAACACTGAGGTGAGGACATTTCATGCAGTGTTTTATGTTGTCTACACAGAAATCC-ATGAagaaagaattatttattttacaaatgagaaaacagggACTTGGAAAAGTTAAGGAACAGTAAGTTGGGGAGCCACTTTTGTTCTACTGGAAAGTTGAGAGATTTTATTCAATGTACGATTTAGCCACTGTGTTTACTCATGTTTACCATCTGAGGCAAGCTGGAGGTATATTGCAAATTGGAATATTTTCATTCCCTGAAAGCAGAGTTTTAATTCAAGGTAGAAGATCTTAAATCATAAAGCCCATTTTTCAACTCTACCTTTTGTACTGgaatt-----------------gataaattttatttatttacttatttttttgcttATCAATAACAAG-GAGGTTCTTCGCTTGCTTTAAAGTAAGATTAGTCCAAAAACCAAGGACATATTTGCTTTCTGGAAAGAGTTTGCTGACTGTCTGATTGTGCTTCTCTG---AAATCTATGACAACCTTTGAAAGACTCATTATTTCCAACCTTGAGTTTTTACCCATCTTCAAGGAAAATGTTTCCACCTGCCATTATGCTC-----------------CTGTGGATCCATAATGCATTGAATCATG-------------GAGG-----GAATAGTTCAGTGAGGCTGGCTTTG-----ATCTCTAccaatacaaataataata-------ataaa-----ataagtaaacaaatactAACA---ATGCAC------TGACGACATCCTTTGTGCTATATTCTCGGGTTGGTATTGAAAACTAGTTTTTTCACAAAGGCTGTTTGTTTGACCAAGGCTGCCTTAGTTTGACCTATAAATTCTATAACATAGACCAAGGGCAACATGCTTACCACAGTAATTCCACACATCATGTAGGATTAAATTcttcattgtttatttct--tttaggaAATCTA-GCTTATTCTTTGTCTTTGAGTAAACATTC-TATTGTAGTTATCTGTTGTGGCACCATCAT--CACTATccatcatt

a score=104417
s chr3           157141223 6108 + 160039680 [encoded data, 6882 characters]
s HiC_scaffold_1 144311423 6517 + 233722169 [encoded data, 6882 characters]

a score=52163
s chr3           157154520 2888 + 160039680 CCAACATG-------ATGAGGAAAAAGGAAAGTCGTTTCTGTTGCTCATTTGTGACTTCCTTTTATGTGATTTCCATCTCTGAAAAATGGTTATTTTGTTATATTTTAGTATAAAAC--AACATTAAACTCCCAGGTACCCAGCTATTAGGAAAACAGCTCAAGCAGAGTGAGAGATTCAGGAGTTGTCAAGATTGCCAGGGTTCAGGACCCACTGTTATTAGTGGGA-TCCTGCAC-TGTATGT-AACCTTTGTTTCTTTCATATGGTACTTAAA------GTTCCCCCACCCCAGTGCAAACCAAACTGTCACTAGTAGGGCAGCCCTAAAGTCTTGGATCTAAAATTATTAATTTCATTAAAATGGATAGAGTAAACAAGACATACATTTTAAATAGCTTAATAAAGTCTAAAATCATTAAAGTATCCTAATGTATTATAATAACATTAATTTATTCAAATGCACAACTAAAGATAGATACCTCTTGGGTCTCAGACAGTGATGCATAATAGTCTTCAGAATGCTCCCAGGAATAAACGCTACCTTGCTATTCTCTAGCCTCAAGTGTC-AGCCACACAATAAATGAACAGGTTGCTATAGCAGCATACACACAGA-ACCTCCCTTCCACACTGGTTTGTTGAAGC---TCTCCTCCTCTCCATTTTCACTATTGGTTTCTCTGCCTGCCCTAGGGTATCTCCCAAAAGCCTGGATGAGACTGATAATGGCCATATGACTGATACAGCGTTTGGCAAGTCTTGAAATCACAATGCCACGATCTTTGCCATCACTC------ATCTTG-CTTTAAACATAATTTCCTGTATGTTCAATATTTAATGTTTGACTGCAGTCTGGGGGGAAGTGAATACAT---TTTAAGAA--ACAGACTCTATCATTGAACAATGGCTTAGCCTGCCAGAATCTAGTGCCTGCTAGATTTGAGGTACGTGTACTTAAAGAGTA--CACATTATCACTTTAAACCATTTTTCCATCCACAGTTGGCTACTGGGTTAGCTTCTTCCACTTCACAGATAAAATCACAAAGGTTTACCAAGATGTAATGAACTAATTTAAGCAACCAAGCATTCAG----TAGTCACTGTGTGCCCACATTTTAAGAGGCCAACACTAGCACTATTGTATGATGTTCTTAGAATAAGATACATAATAAAGGCATTGAGAAATGTTTTTCATTATGCAATTCCAGACTCCCAGGCAAGATGGGCATGAATCTGAAGTA---CTCACAAACATGTAGGAAGATGTGCAGATAAATCTGTGTTAGATGTGGGGACCCAGCCAAATCTAGTGGAGCTCAGCAGTACCACAACTCTACC--AGAACTTGGGACACTGGAGACCATTTTATAACTA----AAGAAACCACATTTTTGGCCCATAGCTGATTT---TTTTGCTGTTCTTGACCATGTTGTGC---------AGGAGAGATTTTTTCCCCTTTCCATTTTATAGTGGGC----TGAGAGATGAAATCACAGACAGTAACTGC-TGCCAATGG--------------GGTATGTGCTGG----------------------------GGCTATGTGCAGCCT----GAGAGACTGACT-CAAGGGAGAAAAATGGCAGCTGTGTAAAAAGCTTTGCTCAAGGCAGAACTAAGCCCCAG--AACTAGTAATGAG-CCTCTATCCCAGAACGATATCCATAAAGCCCCCGGAATGAA--AGCTTGCTGTTTTGTTGACTCTCCACCCCATGAGACTCACCCCTTGGATTGATCCCAGCTTTCTTGGCTTGCCTACAGCATA---------------------------------------------------TCAGTTAGCT--ATTTAGCT------------------------------CCAGTAGCTT-------------------------------------TGTTCTAAG-------------------------------------------------------------------------------------------------------------------------------------GCCCAACTCAACTTTCCTGAAGCACTCATGCTTTCTGAGCTGTCTA-CCAAACTCAAACATAACATCCA-GTTTCTGCTTGAAGATGTCAACGCTAACTG---CCAGGAGTGGACACCAGCagtccaaggtgatccacatttgaatatcagtggttctgtcaattattggatgattagaaaatgaattagcttaatttttctaaacttctgtctcctc-------taataggactaataacacctatctcccagggttgctgagaatattCATTCATGTTCACA---GCAAGTGTT--CATGAATG---AATGTTGGCTTCCCATTCTTACCACAC--------------ATGCAAGAACAAA---------TACTGAAGAATTTCAGTTATAAATGTATTGAGCATGACTGCCATCTTCTAAATATATGTAAAGCTTTCCTGTGCACAGT---GAGACTAGAAATGCAGTCAC--GACTCTGGTCCTGTGGCATTTATTGTTGATTCTGACCTAGAAAGAAAG--AGCAGACAATAATCCCAAAC-ATGAAGCGAGGCAGGCCTG------AGACTGAGCAAGACACAATGCCA-TTGCCCTAGTTATTTTTGCAATCTTAGCAATTGATACTGACACTATGTGGTTG-------GGTTTTTCTCTGGTGACTATGCTGCTGGGTTTCTTAGTCACCTTAGATATCTAGAGTCCAAAAGAGATAATGAGTGTAA--TTTGTGATCATTTGATA-----------------------ATTA--AGCATGCCTGGTTCCCTTTGTTACCTCTGGTGTA----AGATAATACAGGACTCTGTTTTAATACAGTAGTTCCTTTTG----GAGCTGTG-CTCATGGGAGCCTGCAGCAGATGCTGGCAAGTCAAAGCAGCTTACAGTCCACACATTTATGAGGCATTGGCCAAAGACATATG-----AGAGTCAGAGTAATGGCCTTCAGTATGGACCAAACTTCATCTGGTGCCAG-GGGTGGACAACAGCAGGATCTGCAGTAATTGTGGGATCTTAC--CCATGCTCTCC-TGGTA-AGAATAAGCAAGGACATATGCCCAAGCACTTCCATATAAGCA------------CATTTGCTCTTATAAAGAACAGGAAACCTGGTGTGTGACGTTTAACTCCGAATCCAGTAAAG----ATTCTCTTCCATTTTAGGGAATGTCTATAAGAAATAAATAATCTGTCAATATAAGACAATATAAGAATGATtct
s HiC_scaffold_1 144325454 3260 + 233722169 CCAACATGTACAGTAATTGGAGAAAGGAAGAG------CTGCTCTTTAATTCTGCCTTGCTGTCCTGTGCACGTAGTCTCTGCAACATGGTTGTGTCTTTGTACTGTGGGATGAACTTTGATGTTAAAATCATGAGGGCATTGGTATTTGAAGTAAAGGTTGGG------GAGAAATTGAGTCCTAGACCAGGTCCTCAGGA------ACACATTGCAATCCGGGGAAGTTCAATACCTGTATGTtagcttttgtttatttgatgGAG-GCTTAGAAGGAAGGATCCTCC----CTGCGGGAGTCCAACCATCACAAGTAAAGCAGTCCCAAA-TCTCTTCTCcaaaattattaatttcattaaaattgatAAAGTAAACAAGGCATACATTTTAAAGAGCTTAATAAAATCTAGGATCATTAAAGTAGCCTAATATATTCTAATAACATTAATTTATTCAAATGCACAACTAAAGATAGATACCCCTTGGGGCTAACACAGTGATGCATGACATCCTTCAGCCTGTTCCCAGGGATAAATGACACCATATTGTTTTTGGGTCTTAAATATCAAGCAACACAATAAACCAATAGGTTGCTATAGCAGCAAATTcacatacattttcatttctctatagTTTCTGGCAGTGAACATTCCACTccccatttt-atttctattttttgttatgTTCCCATCACATCTGTGAAAA-CCTAGATGAGTCTGATAATGTGCATG-GATCGGTACTGGGCTTGGCACATGTGGAAATCAGGATGCCCCGATCTTTTCAGTCACTCTCAGagatctttcctttaaaaataatttcctgtaTGCTCAGTGTTTAATATTTGGCTGCCCCCAGAGAGGAAATGTATCTGTCTGTCTAAGAAATACACATCTTATCATTGAACAATAATATTGCCCATCATCATCTAGTGCCTGCTGCATTTGGTATATGTGTGAAGAGATGTTAACTAGGTTATATTTTTAGAACATTCTTACATTAACATTGTgcta---------tttttcccatttcacagatgaaaaagcTAAGACTTG-CAAAATGAAATAGCATAATTTACGCAGTCAAGCATGCAACAATTACTTACTTTCTGCCTATCTATTAGGTATCTGGCACTGTC----TTACTAGATGCTTT---AATACAATGAATAACAAAATCATTCAGAAA--CTTTTCCTAATAAAGTTGTACTTTAATGAGGAAGATGGgtattaatttgaaaaaaatcacaccaA-ATGTGTGataact------taaaactgaaatgattat---------tccaaaacagatggtg--aaataaTTCCACAGTTCCACCCTGGAACTC-AGACTTTAGAAGAAATTCTGGAATTACTCTAAAACAGCACATTTTTGTCACCTGGTCAGGTTACACTTTGCCATTCTTGGTGACTTTCTATTAATACATAAAGAGAGATTTTCTATATCTG--AATATTTAGTGaacatttagaaaaatgataATTGATGTAGAAAGTATATGTCTATGGAGAGACAGGTTGAagaaatgagaaggaaagaaCCAATGTTACGCTTCAATCCCAGACTGTGAGTAGCCCAGGGGAGGGATGGCCTGCAGTGGAGGCTGGTGACATCTGCTGGAGGAGGCTACCTCGAAAGGATACTAAGCTCCAAGTAAATAGGCATGCGACCTCCGGCCTGGAGAAATACAC---AAGTACCTGGGTAGAATGAACCttatttttgtttaactttttatctCTTTAGACTCACTCTTTTGATTGA-ACCAGCGTTTCATGTGTGGCTATCACATACTATTTGACCTTTTAGGTCCACCAAGGCTTTAGTTTAGTTTATGGTTTAGTTCAGTTGGCTTGGTTTagttttgcattgttttcattaCTGAAGGCAGAACCCAGgggctttccactgagctacctccccagatttttttatttttaatgttttaagatagagtcttgctaagtcagttAACTGCCCAGGGTAGACTTCAGTTcttggtctttctgcctcagtcttgctgagtgctggggttgcaggcgtGCACTGCCAGGCTTGCTAGCTGCATTACTGCTATTCCTCAGCTAAAGCCAATTTTTCTGAACCACCCACAATTTCTGACTTGCCTCTTCAAACTTAAATATGGTATCCAGGTTTCTACTTGGGGATTTGTATGCTAACTGTTCTTGTGGGAGGATACAGATAG----AGG--------ATATGGATGT-------------GATGCTTGCATGATAAAAAAATGCTT----TCAatctttttaaacatctgttttcTCACCTCTATAATGGGACTAATGACACCTATCTGTTAGGTTGGCTGTGAAGACGAGTTGATGCACACATTTGGAAATGCTTACATGATTTCTCATTGTCAGTTCCTCATCCTCTGAACGCCAAAATGTTCGTGTGTGCAAGACTGAAATCTTTTTGCACTGGCTTGCTGCCATCAGAACTGTATTGAGTAAAGCTAACACATTCCACATGTA--TAAAGTAGTCCTGCTCACACTAAAAAGACTAGAAATACCATCACATGGCAGCAGCCATG-----CTTATTGTTATTCCTAACCTGGAAAGACAGATAGTGAACAATAATCCTAAGCTGTGGAGTGAGGCAGgatgaatatataaaatgaataggATGCTGTGGCAGCTGCTCCATTTATTTTTGCAGTCTCGACAAC---AACGGGTACTGGGTGGCTGTGAAGTCAGGTTTTCTATGGTGAAGCCACTACCAGCCCTTCTGGTCATCCGAGATAGCGACAGCCTGAGGGAGGTTACGATTGTAAATTCTGCAAACACTTCATGAGTCAGAAATGCAAGTGGCCCACATTATTAGCATGCC---TTCCATGTGCTACTTCTGACTGACACTGGAAAATACAAGG-TCTATTCTAATTCAGAACTAGTTAGTGGGTCGGGCTGTGTCACTTAGAAGCTGGCAGCGTCAGCTGGCAAAGCAAATC-GCAGGCAGTTCGCAGATTTATGAGGCGTTGGCCAAAAGCAGAAGGAGGAGAAGTGAGAGTAATGGTTCTCGAGGAGGAGCAAACTTGTATTGGCATCAGCAGGTAGAACACAGCAGGGTCTACAGCAATAGAAGCACCTTATAACCACATCCCCTGTGATATAGACGCAACAAAGAAAAATGGCCACTGGTTTCCAAGTAAGCACTGTAAGTTGATCATCCACTGTTA-AAAGAAAGCCAGACC---------ACGTTTAACTGCTAGCTTGATAGGATTTCATTCTCTTCCTTTGGAGCGAGAGGCTACAGGACG-ACATCTCTTGT-ACTCTAAGTCAATACAAGAACGGTTCT

a score=12630
s chr3           157158583 1046 + 160039680 CTCCCTTGAGAACATCTCA---GAGTTCAGCCAGTGGAAGATTCTAGTTCATTTCTTCTCAGTTCTATAGCAATGTGACAGTTCTGATTT--------GGGGCACATCAGAGATTCGGG----AGTCTAGGGAATTGCAGAGCCCTC-AGAAAATGTGTCT--GTAACAGACATGGGCACAATGACTTAAACCCTAGTACCAAAGTAGGCAGAA--AATGGAACTGTGATCT----GTACATGTGGCATAAATAATCAGTTTAAAATAAAGCTATTAAGGGGATGCATGAAGATATTGCCCTGTTAGCAGAGTTTTCACTAAGCCCTGGGTTCAATCTCAGGCATCAAATTATATTCATTTATTCATGAATTGGTTAAAAGTTATTAATGTGAGACATGAAAGTGTACAATAAGGCACTAGGAATTTAGCATATATTTTCATAATTTTAAAATACTTTCATCCAATGTTCTCATTTAGAATTGGGGATCATT--ATTT-CTGCTCAAGTTTAAATTTTGTTCAATGTTTATTCAACTCAAAGTTTTGTTAATATGATTGAAGTTTGCATTTTGAATAAGTCAAATTCAACCACTAAGGCTAGTAAAGTAATTCTGAGAGTAATCATATCTCACTAC---TTCTGATTTGCATTACACATAGACTAGTTTGTCTCGATTCAGTGTAATATACATATAATAAGTCAATGCCA-------------ACTCCAGGGAAGCCATAGATGAGCTTCTTTGTGATC--AGACATAGTTGATATTGAAACTATCATACATGAAAGAAAAATCTAGCTGGCCACTCACCGAGTGAATTTACTCACTTTC-----TGGTCA--CCATGTCTCATTTA-TATAAATCTGACATTGCTCAAGCAGAAGATAGAATCTGGTTTCATTCTCATTGATACTAATTTATATTTAGAGAGAAAATTTCTTCAATTTGGCCTCATTTAATGATTATTCTAACCCATGTCCTATACAATACT--CCATGTACTTGAGACATCACTACAAA---TGGTGTATAATTTTAACATCAAAGAAAGTATATCCTTGTAGTGTGAACTTTTTTAGGAGATTCAAACAAT
s HiC_scaffold_1 144330329  997 + 233722169 CTCCCTGGAGAATGCTTCCCCTGTGTCTAGCCAGGTGAAGATCCTGTTTTGCTTCTTCTCAGTTCTTTAGCAGAAAAACCATCTAGGTTTTGGTAGATGGGGCACAACAGGGATTTAGTTAGCAGTCTGGGGTGTTGCTGAACCCTTGAGAGAATGTATGCAGGATACAGACCCAGGAAAATTGGTTTGATCTCAAATGCTGGAGCCTGCAGGATGACAAAAGCTGTGATTTTTTAGCAGATGTAG----AAAAATTAGTTAAAAATGAACTTGACAATGTGGTGTATAAAAGTAT----------GCAATACTCACTTTAAG-----AATTTAGTGT------------------------------AAATGGTGATAAGTTAGAAATGTAAGTAA--AAGGTGTCACATGAGT----------------GATACTTT-ATGACTT------------ATCAAATTGTGTCA----GAATTGGGGTTCATTTGATTTATTGCTCAAGTT-AGACTTTATTCAGTGTTTAGTCAAGTCAAAGGTTTGCTAATATGAGTAAAGCTTACACTTTGGATAAATCTTA------CATGAAATGT----AAGTAATCCCTGGAATAATCAAACATGACTATTTATTTTAGTCTGCATTTGACTGAA---GGTATATTTTTATTCAGATCTAGCCACAcagcataatgcaaaggcattcGACTTTAAACCCTCAGGAGATGTCATTTATTA-TATCTCCatgattaaagaaatatttagttCTAAAATGAACACACCAAAGAGGAAAA-CTACAATGCCATTTGGACTATCAGTTTGCATACCCCCTAGTGTGATCAGTACATGAATTAGTCAGCAGAAGTCACATCTTGTT--AGTGACTAAAAGAATCC--TTTAGTCAGGAATTATCTTAAAGGGCCTGTTGAAAG-AAGCTTAATAAAGCTGGTGTTAAGGAACATCTGCTGGACTCCCTGGCCTATGTGCTACTTACCATGTACCTGGGATAACACTATAAAAGGAGGTGTATGATTCAAACATCACAGAAAGTGTGTCTGTGTGGCCTTG--TCATTTAGGAGCTTAACACAGT

a score=23062
s chr3           157160498 782 + 160039680 TCCAGGTCGTCATGGCAGCTCTGCCTAAGCTGAATTTGAAACTGATGTCCCACATCCATGCTTATT-ATAGTATGTTC---TCTCCTCTAGGCTCTTCAATGGCCAACAAGGAATTATCATTCAGAATTTTAGCACAAGATCCATCCTCACAGTGACCAATGTGACGCAGGAGCACTTCGGCAACTATACTTGTGTGGCTGCCAACAAGTTGGGTACAACCAACGCGAGCCTGCCCCTCAACCGTAAGTAAAAAAAAAAAAAAAAACTCAGAAAGCATACTCCAAAGGCCTCCAGACTCCTCTGCATGAGCAGGAATGAAGCCCAAGCACGGAGTATGCTC-------AGCTTAGACCTT----------ATCCTAATGTAGGAACAGGAAAGTTTGTTCCAAAAGTATCTGGATGTTTGAGAATTCTATATACCTGTAAACATCTACATGT-------AAAAAGTCTTAGAGTTTAAAAGGAGTAGGAGTT--------ACAGAAATAGATGAAGTGCATCTTCTGACTGAAGATAGTTAAATGAAGTTTTATCTGTATTGGTTTATTAAGAAAAAAAAGTTTTC------------------TTTTGAAGCATGGAGTAACCACGACTTGAGTTTGCTCTTAGTTGTTCATCTGTAGACACTCATTTTGGAAGTCATCA-----GAAAGTCGCACTCTGTATGTAAAATGAGATAGTGAGTAAACAGGCATTGGAAAAGTATTTTATCTGCATATGTAGCATA-TTGACTCAAAACTGTATCTTGAAATACAATGTAGGGTTTAATTGAGATAAATGCTACATTCTCTATACATCCAAAT
s HiC_scaffold_1 144331582 805 + 233722169 TCCAGCTCTCTGTGGGTTACCCATCTAAGATAAATATGAAGCTCACGTTCC----CAGTACTTATTCACACAATGCTTATTTGTTTTCTAGGCTCTTCAATGGCCAACAAGGaattattattcaaaattttagtaCAAGATCCATTCTCACCGTCACCAACGTGACACAGGAGCACTTCGGCAACTATACGTGTGTGGCTGCCAACAAGCTGGGCACAACCAACGCGAGCCTGCCTCTTAATCGTAAGTAACACAGTG---------CCACTAAG-ATGTGCCTGGGGCCTCCTGGCTCTTATACAACAGCAAAAGCAGATGCTAGGGATGCAGTATGTTCCCGATAGAACTCAGCCTCTTCTGACACAAATTCTTATATAG----AGGAAA--TTGTTCCCCAAGTA-ATGAGTATATGAGAAATTTGAATTCCTACTGATGTCTGCATGTGTGTAGAAAAATATTCCTGTGCTGAGAAGAGGGAAAAATCCATAATTAATAAGACTAACTGAAATGTATCTTCTAACTGAGGAT--TCAAAggc--tttgttttgcatt------ttaaaaatatgagattttTAAACAATGTGTTATGTTATCTTGAGCCATAGATTAATTATGGTTTGAATGGACTTTTCATTAGTTTTCTTCAGACATTCATCCTGGAA-TAACCACAATTTAAAGTAGcttta-----acaaaattaaatattaagtaaataattAAGGACAAACTATTTTATCCATGTAGATACCATATTTTACCCAaaactgtattttgaaatatagcttaagagtttaataaaataattgctatGGTGTTGATATATCAGAGT

a score=65204
s chr3           157170125 4103 + 160039680 [encoded data, 4428 characters]
s HiC_scaffold_1 144342714 3989 + 233722169 [encoded data, 4428 characters]

a score=29747
s chr3           157176911 2121 + 160039680 tatatattctagctactaaccttttgttacaaatacaggttgcaaacagt-----cattt--gtgagttgtctcttc----tgtttgttgttttctttgcttacagacaa--tcctagtttgaca-aagccccatctctctattttttcctttctttcctgtgctttcagggtcctgttcagaaa----tagcctt--ccactttccagtatcatTG----TGAGTTTCAGCTATAGGACT-------------AAATGACAGAAA-------------------CCCCATGAGGCTAGCCCACAGCAGGGTTCTCACCAAATGTACACTAGCCACAGCCCCAGGAGGA-----------------AGGATGGCAGT----GAATGACCTTAGGAGGCAATGATACTTTTAACAACAT--CATAAAAATGTTCACATCTCAAA-CATCTATTCATACACTATCAAGAGCTTTCAAACTGTGAGTGGCCATAGAGCAAAATATAATTGCTAGAATATTCTAATACTTTAGTTCCTAAGATATTTCCTG----CTGTGACACTCCCAGGCAAAGTATCCCTGT-----CTGCATTTCTCTCCCACTCC---------AGCCATTCCCCTCACAT------------------CTGCTTTGCAGTGGTCTAGAGGTGTGTGAGCCTGCATTGATCACTTCTTAAAGTCGCCCAGTCATTT---TACTATTTTGTGAAATTAATTATATTACTCT--TATGCTGATCAAAGAGTGATTTAATTAATGCTACATTACTTAATGAGCTATGTAACCTTTCACTAATGCATGCTTCTTCAACT-TTTTGTAGTCTACTATTAATCTACTCATTAATTCATACTTTAAATTGAAGTTGAAGGCAGCCTTTCTTGCTTTTGGACTATATAGGATGTTGTGAGACACCTTCCAAAGACACATTAGCACCAAACTCTTCGTGTCAGAGAGACATAATAAAATTAAA-TACTTTTGACTCTGAACAAATCAAGAGAGAACTTCAATATGTAGATTTATAACACCTAATCTTATGATAAAAGAATACTCTG-ATTAGTAATGACAAGAATATAGCTGATTAATAAATGTTATT--TATCTCTCAGAAAATAGCCCATAAAGATAATTTATCATTTGGTTACAGTTTATTGTAGCTAAGAAACTCTCTGGCATAGGGTACACTGCCACCAGACAGAGACCAAGAGAGGCTTTTAAGTTAGGAAAAA-------------------GGTGTTTGTTGTTTCTTTTGCTTTGCTTT---------------------GTTAGT-------AACTATAATGCAAATGCCTGTGTG-----------------------------------GACACTCAGAGGTGGGAAT------------------------------AGTAGAAAACTCTGCTGAGTAGA----------------------------CTGGTGTATATCCAGACTTGTCATCTCAGCTCCATTAGCTGATGA--GGCAACAAAGGGAGAATTATGGCATGGCCTGGACTCAGAGAACCATGGCTTCTGAAGTTCAGAAAGTGTACATCCAAATAGGAAACAAAAGAGCACCAAGCAAGAAC-----------TGAGTCAGCACTG----------------------------CAGCCCTTGCAACTTAACAATAGCTGAATTCAATACAAGACACGCTTCATTTTC----TTTTT----AATGTCATTATGTTGCTTTTGTTGGTATTATTTATACATGAGCATGCAATAGAGCAACAAGCTTAGACCATG---TTAGTCCA-AAATGG-ACTGATTACCACACAGA----------AGAAAAT----CACTTCACATCACAT-------ACAT------AGGTATGCATGTATGTTCTAAGAGTTCACTGAAGAATTAAAGTT-CCCCATGTTGATGGCAGTTCTT-CATGCCCAGCATT---------------------------------------------------------------------------------GCATGTG-CTGGTTACACCCCTTCTCACACCACAGGTAC-------CCCTAACGTTCTAATGAACAACACTTCACAGGGGCTAGATTAAGTACTAAGTCCTAACACAGTTATCTGCTCTCAGAAGGTTGTGCCCATTCCATGGGCTTCTTTATGGGTGATCCTGTACAGCTT-TTAAATTCTAACATTTGTCTTCTTTAAAATGACTTTTAGACTCTCAATGTCTAAACCAAAGGTCTAGGAATAAAGGCAAAT--TATTATGGATATTCTATTTTACCACTA-AATTCTATTAAAGCAAAGTACTTTCAGACCCTTTGCTTCAAGGGCAGGGATTTTCCAAGACCTAATTCATCA-TTTTTATTCATTAATACTAAAATCCTGTGAGACTAGGAAAGAACTGACAAAA--AATCTAAAATTGGGTGAAG-AATATTTTAGGCCACTTTTCAAAAACACCAGTATTTCTTGGGATTAG
s HiC_scaffold_1 144349587 2499 + 233722169 TACACGTTATGAATATTAAC---TTCTTAGAAAtatagtttacaaatattttcccccTTTcagtaggttgtctcttcactctcttaATTGTTCCCTTTACTGAGAAGAAGCTTTTTAGTGTGATGTCAACaccatttgtctgtttttgattttgttgacTGTGCTTTTGGGATCTTGGCCTAAAAATCCTTGCCCTTCCCACTGTCCTGtagcatttcctctgtgtttccttTGAAAGCCTGTCTGGGGACAGCAAATGTTGGCAAGCAGTTATCACAGTGTCTGTCTTTAGAGGTATGAGAACAATAAAG--CTGAGTGAATGACAGAAAGTCTGAGTCTCTGGAAGATCGAGAATACTGAAGATAAAGTGTTAGTACATGAATGGCTTAGCAAAGAGATGATGCCTTCCCTAACATGCTATAGAAATGCTATTAGccaaaaatatct-tttgtatgttgacaa----ttttaaaatataaaagactgtAAA--------CAATCACTAGACTCTTATAACACTT-GGTTCTTAAGATGATTCATGGTTCCTGTGAAATTACC---CCGATTACCCCGATGCAGGCTGCTTTCTTCCTCAATTCTTCTACCATGGTTCACTCTCTTCACATACGTGTACTTATTTAtcacttctttctcttgttgAAACCTCATGTGCATCTGTGTcaatttttacttaaa-------agaaatttaagtacTGCCTTAT----TTCACCCCATTGATCTATTATGCTGATCAAATAGTAGGACAATTAGTGCTGAACTATTTAATGAGACAGTTAACCTTTTACTAATATATGCTTCCTTAACCATTTTTTAGTACACTGTTAATCTGTTCCCTAATTCACACTATGATT---GTttacatg-----tttctttctttgaaatcatgCAGGATGTTGCAACAAGCTCTCCAAAGACACTTACAAAGAAAAtcctttattgctgagtaatataaTAAAGTTCAATTATCTTTGCCCCTGAACAATTACATGGAGAAC-TCAATGTGCAGATTTTAAATGTCGCATCTTCTGATTACTGAA-ATTCTGAATTAATAATGATATGATTACAGCTGATTAATTAGTATTATGAATATGTCTTGGAAAATTACCCATCA--GTAGTTTAACATTTGGTT--AGTTTATTTTGTCCAATAAATTTTCTGACATATTGTATGTTGCCACCAGTCTCAGACCAAGGAAAAGTTCAGTTCTCAGAGGAACTTGCCTTTGTTTGAgtgttgtgatttttatttatttatttttattttttgtttctaataaTCTCTATGGCTAGTTCCAGCCAGGTATCATAAAGTTGATTGTGAGTAGCCAGATCTGATTGACACAAACGAGAGTGCTCTGATAATCAGGAATCATAATGTGCTTACTTAACGTTCACATATGCTGCCAAATTACAGGCTTGGCTAAGGAGAGGAGTTTGAGAGCTTTTCCTCTGTATGGCTGCTATGAGATCAGGTTCAG-ATCTAGGTTCAGTTAGAGAATGAAGGAGAACAGAATAGAACGCAGGGCTATATCTTGATACAGATaatcatggtttcaggaacacAGAGGGAGTGTGTGTCAGTATGGGGAAAAGCACTTCCAAGCAAATATTCTGCTCGTGGTGATTCAGAACCATTATCTTCAAACATAAAGACAACATTATTATCCTTTGTGATTTAACAATGGTTGAATGCAACATGAGATAGACCTCGCTTTTagcatttttgagaaatattattattttg---ttgtcgttgttatttataaaatagaatacagcaaagtGACAAATGTAGAGGATGATTTCAGACCAGAAATGGAACTCATTACCATATAGATGGGTAGGAGAAAAAATGTGGAACCTAATATGATGTTTGGAAAACATTtaacagtgtgtgtgtgcatgtac----agcT------AGATTTAAAATCACCTTGAGttcattttagtttttccatGACCActattagatagatagataggtagatacatgatagatagatagatagatagatagatagatagataaatagatagagatatatacacacatatgaatGATTGCAGCCTACTTCTTGTAACAGATATGCAGTCATCTGAATATGTTTCTGGTCTTTACTTTCTAAGGCTT--TTTTGCTCCT-----CCAATGTTGTTGATATCTTTTTGAAGGTTGCAGCCATGTCTTGCACTTCTTCTTAAGTGATCttccaaaaatgataaaattctaaCATTGCTCTTATATAAAATCACTTTAGAAATCTTAACATCAAGAATAATAGCTCGTGCATAAATGCTAATTGTGTCATCTACATTCTTCTTTACCATTATAACTCTATTAAAGCAAAGTGTTTGGAGACACTCCACCAGAAGGATAAGAATGTTCCAGGAACTAGTTCATCACTTTTTATTCGGCAATGTGAAGATACTGGGGAATTTGGAAAGAACTgacaaaaagaagttaaaattctGTGAATCACTTCTTTAGATAACTTGCCCAAAGCATCTGTGTCTATTAAGGTTGG

a score=19167
s chr3           157179753 2733 + 160039680 GTGTTCTCTGTGCCCTCAAAGATCACAGGCTTGTACTAAAAATATATTGGTGTTATTTTATGTTCAAATATATGTGCTGTGAATACTTCT---TTTTATTTCAATGGAGACAAAATAACTGGCTTTTTGGTTGTTACAGGATAAAAATTACAACACTCCTCATCAGTGTAGACCATAGACCAGTG------GCTCTTTGCTTACCAGAAAA-----------CATCTCTGAAGTGCAGCCA----GATCTTCA-CTCATGACACATAAGGTGGTGTAGCTCAGGCAACATA---TCAGCCTTTTAAATCCTGTTCTTTCTTCTTTAAAA-TTATCAC-TCATAGGCTTAATCTGATAAAGAGTTTGTGTTAAATAGTGGACA--TAGTTTATCTTCCAAACATGTCTGTATTATATAATTCTCCAAATA--CCACGATTTAACAATTATCAAAATTGAACTAACCCTAGAGATAATCAAAATTAGTTCTGAATTTTTAATCCAGAGATAAATTATCCTCACTGAATAAGGCATCACACATACAAAGAACATATGTATATGCTTTAATATAAAATAGGAGCATAATAAGGAAAATAAATAATTTAAGTTCACTAGGAGATTCCCAAGTCTCATAGGCTGAG-TAAAATATAAA-ACATATTTTGCAACTATTTACAAAATG-TACTGACTCTTCCAGGAAAAAAAAATATAACAAAGAATTTGTAAGACAAGAATGCTGCCTATTAGATACTGTGTATAAAATGCTGCCCATAAGACACTGTGTATAGAATGCTGCCCATTAGATACTATGTATAGAATGCTGCACATTAAATATTGTACATAAAGTGCTGCCCATAAGATACTAGGTATAGAATGC--TGCCCATTATATACTGTA--TATAAAATGCTGCCCATAAGATACTGTGTATAGAATGCTGCCCATTAGATACTGTGTATCAAATTTTCATCATGAGTTCACCCtctagctcctcccctcatgctagatgtgaagaaattaccccagggagaagacttaataccattattgtcataactcttcaatgcaga----------acttggataa-------------gatctcaattctcctaacACTTTGTTTTTTATTTTATTCCT-----GTGCTTT-----CAGAAGACCACAGAACTTGATGTCACTATT--tgaattgtttgaagtgtttcccttctcaaatagtgacatctgcttgacacca-tccatagatact-ttagaaaacataagactcctggctcaaagacacaagact--gtttctctcagcaatgtcagatgaagtagcagtagaatgagcctattgcattagtttcAAATGCCAAAGTCGTATCACAGATTTCCTAGGTGACCA-CTCTCCAAGCTGATGCTTCTATTAGG-----------------GGGATGCAGCA-----------TCCAGAGGA-------------CCCAGGGCCGGGCATCAGCCAGAGACTTCTCTTT--GTCTTTGGACCTGGAAAACAACATTTACTTTTTATACTTGACATTTCCAATAAAGTCAGTAACAACAAAACATTTAGCAATATCAGGGAGCTAGGAAAGAACGGCTCCTGACCACCTGTGGGGA-GAAGAAATGACAGCAGTGGTGGTTGTTTTCCTAA-----TTCCTAATGTTTGTTCAGGTGCACTGGAACC----------TGTGTGAAAATGCAGACTAAT---GTGGCAGTTCCATGTGAGAGCTAGAGTCT-AACCTTCACACCTACAGG----GAAAGAGACACAGAAGGTTCAAAAACAGCAGTCACATAGCCAGTCTCTCCAGGAAGCAGGATCTCAGAAGAGCATGCTCAGC-----------CTGTGTTCTCCATTTTGGATATCTCTTCCAAAAGTCCAGGAAGTCTTC-TTGTCTGATCTCCCAGATTTAGGAGCTGGTGGTAGACTGGCACAGCCGTAAAAAGTAAACATGAGCTAAGCATGTATGTGAAG-AAACCCTGCAA-------TCTGATCTGAATATGTAGAGCAGATCAGCCTAGAGCACCATGCACTACA---AGCATGGTCAGCTCATTCTTTCTGAAAAGTGAAACTAC-------------------------------------------------AGATGGAGTC-------ACTCTACCTTGTGAAGC---CCATCTATGG-----ATTCAGCATGA-------------------AAGGTCATTC---------------------------------------------------------------TTTCAGAGCAG-------------AGCTTGAAGCCCAA----------------------GATGTCAGCTGCTCTCTCTATG---------TAGGTGATA-------------------------------------------------------------------TGAATCCATA---------------------------------ATGCAAGTGACACCCCA----------------AGTGTCCCCCAATCAGAGGC---------------------ATAGAAGAGTGAAA---CCTCAGGGCTTGAGAATTGT-------------CCAGAATTTATTTTCTCCTGTCAGAACGTGGCCTCTGA--GCTTTCCCATCTCAAGCTTCCTCAAACGCTTCTCTGCCAGGCTTCTCAGCA-TAGAAAACTG-TTTTAAGATAATAAT--------CAGCAACATGGTCACCCTTTATCGGGTGCTTACCAGCTTTTCCTC-CAGGGCCCCTCTGAGGATGTAACACACCAAGGGCTAAGGTACCATTTCTATTCATTTACTAGTGTCTAG-CACAGCAATACATGAAGCCAGACACAGTTATTAACTGGCAGTGTTTCCATGGCAATAACTTCAACACTGAGGAAGCTTAATGTGCTTAGCAT-----TTACAAAACAAGCTTGAACACACAGATATATTTCAGCAGCCATCCTCCCAAAAGCCTGTTATGTAAAGTCATCAGGCCTCAAACACACATG-----------CTCTGTGTTGGAAA---------AATCAATGTATATGATTGGCAGCAATTGAGAACA---CCTGCCAATAGAAATCTCTGTAGGATTTGCTCATCTCAATCATGAG-AGAGACTTAATGTTCGAGGGAGGACTGTGGATGACTATGCCCCCTGTCCAGAATTCTTAGGACCTGTGTGT
s HiC_scaffold_1 144353930 3130 + 233722169 GTCTTCTTCAGGCCCCCAAGGCTCTCAGACTGGCCAGACAAATGCACTAGTTCCCTTTGATACAGAGGTGGACACTCCGTAGCTGCTGCTGTGTTTTAGTTACACA---ACAAAATCA--GTCTTTTTCAATGTTACAGGATATAAATGACCAGATTTTCCATCAATTTAGATTGTA---CAGTGCAGACAGCTCCTCCCTTGGCAAAGGCATATTCTCTCCCATTTCTGAAGAATATCTATCAGGATGCACAGCTCATGCC---TATGATAGTAT--------CAGCATAGCCTCATGCTTTcccctatttttctctcttccttaaaAATTATGATATTGCATATTTAGTTTCAGaacaattttatattaaataagcAACACGTGACTTGTCTTCCAAAGATGCCCATATGCCATAATGCCCTCAATGAGTAGGGATCTGGAGATTACCAAAATTGTACTCACTC-AGAGATCCTGAAAATGATTCACGTATTTTGAATTCAGTGAAAAAGTGTCTT------ATCAAGCATTA-GTGTGCATAGAACATATGTATATTTCTTAATGTAGAATTAGAGTACGCTAAGGAGAGTAAGTTATTAAGGTTTTGTAACAGATCCCCAGGTCCCTGAGGCTGAGATAGAATATAAATTCATTGTTATCTCCAATTCAGAAAATGATGCTGCATTTCACAT-----AAAATGGCAATAATAAATTCTTAAGACATCATTACTGACC-----------TGAAGAAAGTG-------------ACTATCTATGAGCTGCCACCCCC---ATCTCATCCCTGGTCTTCTCCCTCTC--ATTTTACGTGTGAAG--------ACACTATTCCAGATAGAAAATGTAATAGCTGGTCTTTGCCATAGTTAGAACATAGTGGC----AGAACCTAGGTA-AGa---------actgagttcttttttt----tttttttttttttttttttttttggctttttcgtttttatcgg--------------taccagggatcgaact------catgactgcctg---ctttcaaggcaggcgcttatgccgctgagctaaatccccagcccccaatctcAGTTCtcttaatgctttattttttatttgtttgtttgcaaatgttctaaaaaaaaaagactacagaaaTCTGTGTCAATATCTGTGGAGTGTCTGAGATTTTCCCCTACTTATAAGCTAATGTCAGCTTGCCACAATTTCATGGAGGCTGGCAGAGAACACAAGACTTGTGGGTCAGAGATAAAAGACTTCATTACTCACAGCAAAGCCAGTAGGCAGAGAGTTAGCAGATTTGTCTTGATTTAAGCCCTGACTCCACAGGAG-AACATGGACTCCCTAGATGGATATCTGTACAGGCAGTGTTTCCTATTCCGAGAGAACACTGAGTTCAGGAATGCAGTGTTTTCTTCGTCTCCAAAGGAGACATTGTCTCATCCCACAAGATGGTGTGAGtaagagttttttcttttcatcttt-----tagttaaaag--------tttgattcctggcattCCCAACAAA-TATGTCACAACAAAGCATGTAGCAGTACTAGAGATACATGAAGGAGTATCCCCTGAGAATCTGTGTAGATGGAGAGATGA---AACTGGTGGTTGAATGTCCAGGGTGCTTCTTAAAGTTTATT---ATGCACAGAAATAAAGCAATGAGCTTGTTAAAATGTGCTCCCGTTCAGTGATAGTG-TACCAGAGGGTGAAATTCTCAATTTCTTCACCTTCTTGTCTTGCATgataccatga--gttcaaggatcACAGTTAGTTA------------AAGAGTAAGGGTCTCGGTTAATCTCGATAGGTTTCATTGGTCACTGTCTTCTAACTTCTACAATTCTGTCTCACACACTCACAGGGTCTTTATCGTCTACTTCCCAGGGCTTAGCAAAATATAACAAAGTGATGCTGTCT--AAAAGTACAAAAGACAGGAACATGCATTCTAAGTAGACTCtagaatatctattttttttttaatttatagtgaGGCACTGACTTGGAT----TGTAATATATATGGCATGATCAGTTCATTCAGTCTCTAAAAGAAAGCCATCAAAATCAGCcatcattttattaattcatcatGAGAAACCTTGGTCCGAGGACAGGATCTACTTAAACTCTACAGGATCAAGCATTCTCTCTATAGAGACAAGTCTACATGAGACAACAAATCACAATCAGAAGGTTGTTTGGGGACCACAGGGACATAACagtgaaatcagaaaaaaataaaccaactcTGTAGTGGCATTAGTCTAAAATCAGTGTTGCTTCATTCATTTTGCAACCTGAAAAGATGTACCTCGTATCCACTAATGCTGTCTGCCTTTCCTGTGAAGAATGCATATGTGATATTCACCTTTGAGTCATCCACTCCTAATTTGCttgttgactttattttctttagcCATGTGGTTTGACTGATTCTATATCGCTACTTGCTCTTTAGTGCAACATCAAACACATGGTAGTTTCTGCCCACAGTAGGCATGTTCACAGTGTCCCTAAGCCAGACCCAGTGCCACTGTGTGACTCCCTATGGAGGAAGGTAAGGCCCTTCGTACTTAAGgattctcaaaataaacaaacaaaaagtccttTATTTTTATAAGCATTCTGCCTCTGAAGGTTTCCTAATCT----TTTCTGGGAGCACATTCTTTTCAGTGCTATCAGTAGCTGAAAATTGCTTTTAAGATGATATTACCAAACCAATCTAAATAGTCACCCTTTATCAAGTGTTCATTGATTACTCCTCTCTGAGTCCCTTTGACAATGTAACAACCCAGAAAGCAAAGAGctaagtttattcatttattagcAGCTAATCACAGTGATACGTGCAGGCAGGCACATTTAGTAACTAGTATTCTTTCCACAACAGTAATTCCAAC-CTCCTGAAAGTTAATACACTTA-catgtttgttaaaaaaaatgcTTGAGCACGCCAAGagatttaaatgaatatatacttaTACATCTCTGATTTAAAGCCTTCAGATCTCATTTACACATGGCCAGCCCCTTCCCTATGTTGGTAATCCAGGGTTGATTAA-GTA-AGCATTTGTAGTGGGGGAAAAAAGGCCTTAACAACTGAATATAACAGATGCTTTCGTTTTCCCAGTAGTGAGAAAAGAGTTAATGTGAGAGACACTGGTGCTGAACATATTAACTCCTGTTCAGAATactggaaatatatatat

a score=12903
s chr3           157183023 497 + 160039680 TGTTAGTGCTTTCGTGTGTTTTAGACAGTT-ATTTCAACATGTATCTTGACAGACTAAATTGATCAACCCTACAGAAACTCCTGCTGATTTTTTATCTTATTTTATTTTTTAGAA--TGCCAAATCATGACACCAGATCAGATGATGATTAACTGTGGGTGGACTAGGGCCTCGGGAAATTACTAAATTGGATTTGGATTGACAAAGTGATGCGACTCTAGGCTGCCTAACTG--CTTTCCTACACAGCCAAACACATA----ACTCTCTCATCCTGACTTTGAGAAAACTTCAGATAAGTCTGTCTAATAAGTCTCTCTCAAAATATATTCGTGAATAAGAAAGATGCAATGATAAA-TTCTATTAA----AAAAATGTATCCTACTTGCTA---TTAATTTTCACAAGATATATGAGCCGTTAACACAATAATCCATTATATTTAACACAGTGCCTAAAATGAAGGCTCTCTTTGGCTGTTTGACACACCATCGGTTTAGTCGAGAAATTAG
s HiC_scaffold_1 144358333 472 + 233722169 TGATTGTGCTTTTGTAGGTTTTGgttaatttactttaattttgaTTGTGGCAAAAGTGATTGACCAATCATACAGAAA---------------TctagtatttgtttttttaagaattgGTAAATCCTGCTGCCAATTCAGACTGTGATTAA--AAAGACATCCTGGTGTGTCAGGAATTTATGAGACCAGTTCTGTATTGATTAAATAATGTGATGGCAACTTTCCTAACTGTACCATGTGAGGCAATGGTACCCATAGGGGACCCT-TCATTTTGACTTTCAGAGAACtttagataa------------------------aatatatttatgcataaGAAGGAAATGATGGTAAAATGCTATTTATAGCAAAAGTGTGTCCTACTTTCTAATATTAATTTTCACAAGAGATATGAGCTCTTATCTCATGAATCTATGCTATTTAATACAAGGTCTAAAATGAAAACTTCCCTTTACCTCTTGACACACCATCAGTCCAATCTGGTAGTTAG

a score=23557
s chr3           157189011 639 + 160039680 TCCTTCACACCATCA-------TTATTTTCTGCTTCTTATCTTACTTCTAAGT-CCTCTGTCATGTCCTATGCCCCACTGTTCTG--TAGCTACTGAAGAATCTGA-GCATTAGCAGCCACTCTGTGTGGTCCTGCCTGCGTGCCCACGATTACAGCTTTGTCCTGTGTAGAGCACCTGTATTCTCAA-GAAGAAATGTGCTCTGTGCAGAGACCAACACAATTTGGGAAACCACAGGAAGAGACGCTTACTTTCCCCTGTGGAAGCAAGTGGCTTAGT-CTCCAAACCA-------------TAGAGTCTGTTTACAAGAAATGACATGAATTATAAAAGTCTTAA--AGGTTT--------GTGTCCACATACAAAGAAGCATGCACAAGCTCACACATTCCAGCTGtttattttcccttttcttttttctttcttttttttttcttGACCGTGCCTTAATTCCCCAGTCACTCCAAGCCAAGGATTAAGTCAAGTGAGAGCACTGCAGAAATCTGATCCAACCCTGCATGTGGGTAAAAAACACAGAAAAGCTCAAAAGAAGCAAAGCACAGCT-TCCCCCAGCACAGCCTCAGGAATCCGTGCCAGTTC--------CTTCATGCCGCCTCTTTCCCT-GCAGTAAGAGCACCGTTGGCTGCTTTGAGAAGAGGAGCCTAG
s HiC_scaffold_1 144365760 664 + 233722169 TCCTCCACTCCATCCAtcatatttatttcatgtttctgttctt-ttcctaagcgcctttgctgtttctttttcttctcttttctgcaTACCTGGCGAAGGAACTGAAGAGTCAGCTGGCACTCTGCGTGTGCCTGTCTGCAGGCCAATACTTGTTGCTCTGTCCTATTTAGAGGACCTGAGTTCCTAATGACGAAATGTGCTCCGCACAGAGACCAACACAATTTTGGCAATCACAGGGAGAGACACTTATTTTCCCTGCT--AAGCAAATAGCTTATTACTGAAAACCACTAAGAACCAAGCTGAAGTCGGTATACAAGAAATGACATGAATCATAAAAGTCTTAGCCAGGCTTAAACTATTGTGTATACATACACAGAAACATGCATAAGCACACAAACTCCAGCTGttcatttctcccttt--------------tcttttcttttgaatatgcCTTAATTCTGTAGTAACCCCAAGCCAAGGATTAAGTCAAGTAGGAGCTCAGTGGAAATCTGATCCAACACTGCTTTTGGAAAGAATTCATAGAAAGGCTCAAAGCCATGAAAGCATGGCTCTCTTCCA----AGACCCAGTAGGGAGTGTTTGCTTTGTGACCATTTTATTCTACCCAGTTACCTCTCAAAAAATGGGGCATTGGCTGCTTAGGGAAGAAGAGCTCAG

a score=24412
s chr3           157190097 2527 + 160039680 acacacaaaataaaTGTTTAAGAAAATATGATAACAA----AATTTTATTGCTAC------------CATCTTTTTAAAAATTTTTTTTTCTTTT-----TCCAAATAATAGCAAA-GACCTAGAAACCGTTT-TTTGTCTCTCTACTCCTCTCAGTCAATAATTGATGATAATTTACTCTCCCTTGGTATGATTAGAGCATATTTTAAATTATCCATTTGCATTTGGTCTGTAATTAAAATTATGTGG-CATTTAGGACATTATCCTGCC-AAATGCTTCACAGGCTTTCTCTGATGCAGCACAGAGAGTCCAGGTGCAAAGCCACATAAAA-CACTGAGCGAAAATAA----------TTCTCTGTGATTTCACATGCAGGCCACTTATGTACCAGCTCCCAGGTGATATACACAGATCTGGATTTCCAGGACATGTAGACTCT-TCAGACTTATC------------CTCTCCTGCTAACCCTGAGGGGAAAGGAAGACAA-----ATATAGTGAATACAGTGCTTGGAGCACATGTACCCATCAACAAGCATACAAATACGTTCTATGAGAGA--CTATTACCCAGCAAGAATGATTCAATTACTTGTAAGAGGAGGA-----CATCTCCACACACCTCTGAGAACAAGCATGGCCT-GCTCAC-----CCGTCAGTGGTCAGGGGACTTGTTTT-GCCAATAAATCAGCAAAAGTGA---TGCATGCTGTATCTAGGAGGAAGTCATTGGAATTCCTAACAG---GGTATGTCAGACTTCCCC--ATGAGAGGAGTGTAACTAGATATATCCAGAGTAAAATAACATAGAATCTTGTCAAAACCGCACCTGACCAGTAAGCAGCAAAGTGCCTGAGGGTTGAGGACTGAGCTCTACTGTGGAGCAGTTGAGCAGCATGTGTGAGATCTTGAGTGCAATTTCCAGAatacacacatgcacaggcatgtgcacgtaaatgcatgtgtccatgttcccgaacatacaaacatatgcacatacatacacacatgtattcatagattacatgaacacaAAATATATTTTGTGGTTGGAGCTACAGAG-TTTTGATTAGCACCACAAAACAATCTGGCTACAGATGGTAAATCAGTTtttttgttgttgttgttctttggtgtttttgtttttgtttttgtGCATATACAACTGACTTTACAGAAAGGAAATAGAAACCATAAACTGTAGAAAATAAAGGGAATTAGTTAAATATTAAATCATTCCCAACAGCTATTTTTAAA-GTAAATAAGAATCCCCAAGTCACATTCTGGCTTTTCCTTGAATAATTTAGAAAAGCATATACCTTCATAAAGATTTAAGTACAACTTGGATGGAA--GAGCCTGTGGGTGCTCAGGTAGAGATGACCTTGGGTCAGTGAGAAGGGTACTATGGTAGAGATGATGTTGGATC-----------AGTGGTACAAGG-------TGCTGGGGTAGAGATGACCTTGGGTCAGTAGGACAATTGCTGGGATACAAATGATCTTGTGTCAGTGGGACAGACAGGTTAGCATCTGTCTGTCT--GTGATGGGGCT-ATGGTAAATGCTACAATGTTCTTAATG-TCCTTCCCTCACATCAAGAAAGCCAC-AGGTGAAG-TGGTGCTGTGGGCACAGTGTTTTGAAGAAAAAAAAATAAGATCTCTCCATCGCATCCTGCAATTCACAGTGTGAAATGGGGGTCAAGATGATGACAGGAAGGTTACAACAGCAGGGCAAGTTCTACTGAAAAATTGTTTCCTTTAACTGTCACCCATGATTCT--TGTTATCTTACCAAATCCTGCCTGATGTTTATTA---ATAACATAAATCAAA-CCTTGGCATCTACCTGATGACTGAA---------AGCCACTGAAGAACAGAAAGAAAATTCAAGAATCTGTCTTCACCTCTTCTTCACACCTCCAT-TCATTTCCATTTATAACCCAGCAATGAAACTGATCAAATCACATGACCTCAAAAGATGGAAGTAAGCCTGCACAGATTCAAAAG------TATGGttatatatattaaaaaaaaaaaaaaaCTCTAACAAAAACGTTATTAGCCTCCTACACCGGGTGATTCACTGT--------GCTATATTTATTCATATTCATGAAAGAATGGCCTTAAAAGAATGCTTTGCATGGATTATCCTTTCTTTGATGTGGGCAGAACAGATAATAAAAGTTCACCAACACCATCTGTTTAATGCTGGAAACTCCAGGCTTCAATCTGACGGCCCACACAAGTCTCTGAG----CCTGTGCTTCCAGGATTTCTGCTGTGCAAAGGATCCATGATGCAAACATGTCAAAGCCTTAAATGCTTCTGTTTCAAATGGCCATTG-TTCTAATAGTATAATTGTCCTTAAATTAAAAAAAAATTGAGAATTACCTAGTCAAGTTTAGGTTAAGGCTGGTATTGTGTGCATGTGAGCATAGGCATGACTTTACACAGTAAGTTTTTTAAATTTTCTTTTAAGGAGTTAAGTTCAGTGGAGCCAGTTAGTTCAGGGTCAAAAAAATCCTTTTTAA--AATATGTTTATCTTGTAGTTTATCATCCCAAATGAGAAACATGTTAAAGG-AAATGAAAATTCAATAAAAATTTTTA
s HiC_scaffold_1 144367814 2271 + 233722169 acaaaaaaaaaaaaaaaaaaaaaaaaaatcaaaacaacaaaaatcttgcTCCTACATTTTCGTGGctcatatttttatcatttttatgttcttcTACTTCTCAAAATGATAGTAAAAGGCCTAGCAACGATTTATTTGTCTTTCCAGTTCATTCAGTCAATAATAGATGATAATTTACTGTCCCTCTGTATGATTGgagcatattttaaattatccatTTAAGCTTGGTCTGTAATTAAAATTATGTGGGCATTTAGAGCACTATTCTGCAGAAATGCTCTGAGGGCTTTCTCTGATCTAACTCACAGAGTCCAGGTGCAAAGCAGCATAAAAgcactgagggaaaaaaaaatcagccattTCT---TGGGTTCATGCACTGGCCATTTGTTTGCCAGCGCCCTGGAGCAATCTAAGCATATAGCTTTGCAGGAGATTCAGTGTCTCCCAGAATTACCAGGAAATATGGAATCTCTGGAT-GCACTAGAGAGAAGGTAGGTCTGTCTCtctattttgaa-acatttcatgGAACATGACT-TTTATAAACAAACATAT-------TTCTATGTGAGATGCTATTATCATTCATGCAT-ATTCACTTACCTACTAAAAAAAGATTATTCATCTTTGT---CTCCAAATATTGTGCAAAGCCTCCCTCATATGTGACATCAGCAAACACGTGATTTGTTTCAGTCAATGAAACAGCAGATGTGAATGTGAATG-TGCGACAACTGTGAAGCCCCATGAACAACTAATAGTTCAGTATCTCAGAGTTCCTCTGCTGAGAGAAG--------GACGT-----GAGCCAGGTAAACTGGA----TGTCTGGAT----CCTGGCC--CTAGAACTAAAAGGCCAGAGAACAG-GAGCAGAGC----------AGCAGTTGGGCTGCA-------------------------------------------------------------------------------------------------------------------GTCCACGAGGTGCAGGGCCAAGAAAGACATTTTCATGCAGGAATGAGTGAGACTTGGACTGTCACCATGGCATACCCCATCAA--------AAATCAACTGAACTGGTGCTCT------------------------------TACCTCTACCGATGACTTAAGGAAAGTAGGAGAAAACCCTTCAACCACACAGAATGAGCTGGA-TAGCCAAGCA-------ATTTCCTACAGCAACTGTTAAATGTAAATGAGa---------------tctga---------aaggaaggaaggaaggaagaaa-----ggaaggaaggaaggaa-----ggaaggaagggagaaagaaagtgaaagagagaaaaggagaaagagaaaaagagaaagagaaaaagaaagaaagagtcttGTACTTGAATATATAGATTTATTCAAAGTTAAGACTGCTCAGCTGGAAAAAAAACTGTCTTgata-----------gagagaaaaaggagattgca-----gagaaaggaaggaggttaTTTGTATTGTTAGGTGATGGAGTTGGTGGTAAGCACTGTATTGTATTTGCTATTCCTGctctagaaacaaaaaagcaacaaggtAAAGCTAAAGATTTACAtacattgctttgaagaaaaacaagC--GCTCTCTAAATTCTA-ACAGAAATTCATACCCTCAAATGTGTGCcagaataatagcagaaa----acca-AGTAGAGCAAGTTCTACTGAAAAAGACTGTTCTTTTCATTGCACCCATAATTattatgtcaaaaaaaaaaaccctg--tgatATTTCTTAATGATAACCTGAACCAAACCCCTGACGACTGCCTTGTCACTAGAAAGCTTTTTAGCTAGGGAAATATACAGAAGAATTTCAAGGACTTGTCATTAGTGTGTCTTTGCTCCTCCATGTCACCTCAGCCTACAA-ACATCAAGGGAACCGATTCA---AAATGACCTCTACCGAAGGAATCGCGATTTCCCAG--TCAAAAGGACGGTTACGGTTAAGTTTATTAAA--------------CTAGCAAACATGTGATCTGTCCCCATCATC------TCCATAATTAAGGAAAGCTACATTTATGGatattcatgaaaaaata--tttaaa--aataatttttgtcactttttctccttttgatgtGGGCAGAACACACACTGACAGGACACCTGAGCCATTTGTTGGACACTGAAAATTCTAGAAGCCAATGTTGAG---TAAAGAGACGTTTGAGTATCTCTATATTT---AGATTCATGGTGTATGGGGAACTACTGGTATCAAAA-ACCAAGAACCAAACTGTTTCTATTTcaaatgaatatttcttttaatgCT----TTGTTCC-------------------------CCCAGTTCAGTTAGTGTC----------TTTTGTGTAT----------------CTTTAAACTATA----------------------------AAATACAGTGAAACTACTGTATACaagg--aaaaatattctttttaactgGTATG---ATCATACTGTTTGTCATTCAAACTAGGACGTTTTTGAGAGGAAAATGGGgatcttattaaaatttata

a score=13594
s chr3           157196196 1680 + 160039680 ATGCTGTTGTGTCCCAAATGGAA----AATGAACT-----CTGCTACATTAAGTGACTAATTCTTTA----TAAACTGCAAGGGTTCAGAGTATTTGAGTGTCTGTATTGAGAAGTATCTTTCCTGGGTGCTTGAAAGGAGCCCATACAATGCTGC----ATAAACTGCACCAAACTGTGTCTTTCCTACTGTGAGA-CATTTTTTTG--TAACTTACTGCACTCTTCAAATTCTGCTCACTTT--TGCAGAGTAAAAGGCACACATCTATCTCGATATTTTCATTTTGCTGTTCTGCATATCTCCTGTCCCCAGGCACTTCTCATTAGGTGTGTTTATCACCATATGTAGTCACAAACAAAACCCAAAACAGACAGTAGCAATCGGTAAACTCAGCACCCATGTCTGCTTTCAAAACAGAACACAACCTTCCTCCCTTTTGGAAGGCTGGCTTTGGGAGCA-------CCACAGCCTTCCTCTGTTGCTGTGCTTTGTCCC---TGCTGTGTGTCATTGTGTATGAATTTTAGTGCTTCTGTGAACTTTTAGTAAATGGATGGAAACTTGCTTTAAGACACTGTCAGGATCCAGAGAGAATGGTTGTTCA----------TACATGAGTAAaatg-tgcatgaatata-----tgtatatgtattatatatgtatatatataatatatatgtatgtatatgtgtatatacaCTCATATTATCACAGCAAATGCATCTGGAATTATTACATAAATCTTA--ATTAATATGGTGTAATTGTCACAT--------------------------TCAGTGCTTTGAACT--------------------------------------TCACTGATCTCTTCACTGGGT----AGTGATCAGATGGCTGCAGACATTCAGGGAT--GGAAGGTTTACAGGTGTAGTTCATGATAATACAAACCCTTTACTACAAAAGCTGAAG---CCCAACAAAGAAACTTCTTGGATCAGGGCAG------GGCTAATATTATACAC---TAATGTTTGATGCATCTGAGTTCTCAGAATTCATCAAAAAAATATTTGATTTTCACTTAAAGACAAACGATCTAGAAAA------ATGACATTTCGTACTACACTTCATAATATTTTGTAAGCATGCCAGAATTTTCTAAAGTTCATGGTCTAGT--CATTTCTTAACTGTCAGTTTTTATATTTTCTCACATTAGCTAACATCATAGGAAATGTATTTTCTTGCTTATTTATTATTTAATTATTCATGTAgctgtgtcaggaatagaacccaaagtgtcatacatgatgggcaagtactctaccactgagttatctccactcccTAGGAAATAAATCTTTCTAAGTTTCCTGGGTGATAAGTAAGAATATTATCAAATAAAAACAC---AACTATCAGGGGTAAAAAAGAAAGAAAACAGAGTTGCCTTCCTGAAGACTGTCTGTTGTTAATGTCTCAGTGAGAAACAAAAGGATATTTGAAGATATTCTTATCTCTTAAGATT--GAGAAATAAGGTTTCAATGGAAACC-----TTCAGAAGCAGGGAGCACAAACTCTTCAAAGGTCATGTCC--TTTACCTTTAATGGATATTTTCTAGCTTTTTTACCCAAAGTAACATATAAAACTATAAAATCTGACAAAACATT--ACTTCTAATTTTGGCACTG-------TTGAATTCAATATATATTTATCAGTATTTTTATCA----CTTAGAAG------TGTATGCTTCATGCTTATGAAGAGAC--CACATCTGTGTTATCCTTAGGTGTTCTCAGCACAATAAGCAGCAGTGTTTTAA
s HiC_scaffold_1 144374151 1663 + 233722169 ATGCATTTGTATTACAAAAGGAAGTGTAATAAATTAATTACTTCCACCTTAAAGCACTAATTCTTTAACTACAAACTATCAGGCTTCATAGAATTTGAGAGTTTATAGCAGGGGAGGCTTTTTCTGAATACTTCAAATAAATCCACAGAATATTTCTACAACAATTCCCACc---ctgt---tttcctaatgtaaggGCATTTTCATGCTTTGCCAATTTTGTTCTCAACATTCCTATTCctttcatgcaaaaaaaaaattacacatctgTTCAGGTGTTTTCATTTTACTATTCTGCACATCTGTCTTTCTGTGATCGTTCTTATTAGGCATATTTATCACCATATGCAGTCG-----------TAAAAAAGACATGAGGAATAGGTTAATTGAATATTTACAGCAACCTTCAAATTATAACATAGCCACGTAACCTTCTGCATGGCTGAC--TGGGAATATTAATCTCCCCGTCCCTcct-tagtgttttattttctcctgagTGCAGTG------TGAGTGTGAGTTTATATATGCCTGTGaactt---gtgtatgtgtgtatgtgtaa-taatgaaacagacaaaataaattttaaaatgttatttaattctgACATGACATTATTACACTGTTACATTGTGATAGTTCTTGTAAGTGTTGTATGAATCCCCA-AGATAAAATATATACCactgtgtgtgtatat------agagtATTCTAGAAAATGCTGCTAAAATTGCTGAGCAAATCTTATCattcattgaacacaattgtcattttttaaattcttcagccCTCTTTCTGATCTACTCTCTGAACTAACTGCACCTGTCTTCAGAAACCTTTAGCCTTTCTGTCTGGCTCCTCTCTTGGCTAGGCAATGAATGAGCAGATGGATTCAGAC--CCATGAATCCGATAGGACTGCATATGCATTTCATGATGATCTGAA---------ATGTGAGTTCAGTGCCTCCAGCAGGGAAACCACAGCATTTGCCGCAGCTTACAGGCCGCTTTTCTGTATGAAGAAGGCTTGATATGTCTGCGCCTTCGTCATTGGTCCCCAAA----CTGGTTTTCA-TTAAAGACAGGATACTTAGAAAGTGACACATGACACCTTACACAACACGAAGT-----------AGCACTCTTAGATGTGCTTAAGTTCAGAAACATGCAGCATTTTTTAACAATC---------------------TAGTCACCA--------------------TGAGTATCTATAGTCCTAGTATTTATGT-------TTAGGCA------------------ACAT--TGTGCAAGTAC------------------------------------ATTTTGCT--GTTTCTTGGGTGAGTTGTAAAA--AATATCAGACAGACACATGAGAACAGTCTG--------AAAGAAGTTCTCAGGGATATCATCCTCAATG-TATCCCTTAACAATACTCCAGGGTGGAAC--AAGGACATCGAGAGATATTCACAATTCCCAGGATTACAAAGAGCAAAATCCAAACTATTTCCATTAGTTCAAAGCTAGAGAACATTCAGTCTTATGAGA-CATGTTCTGTTTTCCTCTAATGGATCCTCGTTCATGTCGTTTCCTGAGTTACCTGAGGAAG--AAACAGTTTAGTAAAATACCAAACTTCACATGCTGAAACTGGCTGGTCCTGtactctgttccttctcagtaatACTCTTACTAGCTGTTTAGAAAGCTGTTGATTTGCTCCTTCCCTGTGGACAGACAGCACATCTGTGTCATCTTTACATACACTT--CACAAGcagaa--agtgttttaa

a score=60617
s chr3           157198494 2623 + 160039680 GTCCTTCTCCTTGAAATTCAGAAGCATTCCCATTCTGGCTTTCTAGCAGGGTCTCCACCCGC-GGCCCCTGAAAACCTGTATG--TGAATCCAGAGAAGCAA----CCAGGAACTTGGTGGTTAG--------------TTATCACATCAACAGAAGTAGAACTCAGACCTGAAGTGTAAAATCAGACTCTAGATATACTCAGAAAAAATGAGGACTGTGGAATCT--CTGGTAATGTCTGTCTAGGAACAGAGACTTGATACCCAACA----------CTGGGTCCTCGATAGTTAAGGGCAAGAAGAGGGTTCATGGAGAAAATATTCATTACCAAGCATGACTCTCTAATCACAAACTCCTCT-----TCTACAAACTAGCAGTGACTTGTTCTTGCGCCATCTGGAGGTGCTTTCT---GGCAACAAAAGGCTACCTAAGCCTGCCCCATTTTGGATGTTTGAGAACCATCATCGCCTTTGaaaataata--------ttattatttgatttttatat---aCACATTCCACTTTAGGAATAGTTACATTTTGTTACCAAAGTAGTATTGTCTAATTCACAGCATGATAT---ATGCAATTAGCACCCGCTTGATACTTAT-------ATGCTTGTTTAATGCACAACTTTTCAATA-------------------------------------------------------------------------------------------------------------------------------GTAGAAA-AGTTATATTCTGAAAAATGGAGTTCTTTTAAGGCTAAAAAGTTAACTAACGTCATTTATATTATAATATCCCATTCTTATTT-----CCCTAGTTCCTACTATATTTTTAGGGTTTAAAGAATAAAGCCAAATAATAAAAATGTTTTTATGAATCCTTTGAAATATTAATTAAAACAGTGAATTTTCATATAGGATGCTGACTTGGGTTTGTACAAGAGAACAGCCTTCTCTGCAA-GCCTCACTTTCTATTAAGTCTTATTTTTAAACGTCCTAAGAGAAAGATACTCAATATTAGCAAAAGCAAGATTGTTAACTACAAAAAAAAGCTTTTTGTACTAA-TTAATTGTAACTATTTTGAATATGCTAAGTACATTAAGACACTTGGAC-ATAACTGTACACTCAGATAAGTTGGGAGTTCAGCTAAA-AGGGTGTTTTAAAAACCATAAAGTCCAAGCTGGT-TTTTTTTTCTCTAGACTGCTCTAGAATATTGTCAGAATCACAGGT--------------------ACAAACAGACATAAATCCTCACCTCTGTCT-AATTCCTTGAAATAGATGGGAGCTCTGGTACCAATATATTTCAGATGAATAATGTCTCAGCTATTAATTTAAAATATCTCCATTGAATCATTCCTTTTGAGAATTTTCATCTAAAGGGTTTATCTTTAAGTCAG-TTTCCTTGCTTAGGACACATTCTGGCAGTGTCTGGCCTACTTCTACAGCTTAAAAAGTGTTCATTAAAATGAAATACATTAACATATAAGCCTCAGACAGGGAAAACGAAATTGCCTTAAATAACTACCAAGGAAGTAGGTGTAAATGAAAACAGTTATAAGCTGAAAATTAATTCAAGAATTAATACTTTGGTACTAGACAGATTCCAGGCTAGGTGATTAATTATTCATTCAGACATGCTTGAAATAGCCTTATTATTTAAAAACAGAACAACATAGAGACGAGATTGGTCATTCG-AAGGGTAATAAGTAAGAATTATAAGTTAACATGCTCTGGGTTACAAGGTAACATAAGTTGATAAATATATACTATGGAAAAGAATGTTTTT----TTATATTCTTATTTCTAGAAAGTATATCTTAAGTAAAAATTTTAATAATA---GGT-AAAAAAGAAAGAGAAAAATCATAGTGTAAATACATGTAATTTAAAGCTGGCTGACATAACTCTCATCTGGAA-AACATATATACTAAATAAATAAAGTTTGTATTATACAAACCTAAGCATGAAAAGGCCAGCGCATATCCC-AAATTCAGGTCACATGCAAAGAACTGCCTCTTCCTG-CAATG-TGATTCT-TGCTGTGTGGAGATATTTGGGGGCTTCGAT-GCTAAATTCCCCTGAGAATGTGCTGTAAAGCAAAATGCTTTTTTGCTTACGTACACATCAAAGGGGAAAACAGAGCTGGCAGTTGCTGAAGCAATGAAAACAGATTCTGATC--------------------ATGCAAAGACCTCAGTATGGAACTGGGTAGCTGTTGGGCATAGCAAGATGTATGGGTGTTTT------AACCAGGCAGTATAGGAATGGGT------GGGAATTTTCAGGGA---AGCAGCCAGGCCTGGATG--TTTGGTGAAAGCAACCCCAGAGAGTGCATGGTGAAAATAACCAAGAATGCTCAGGTGACAC-CGAAGTGTGAGGAATTTGGCCAGATATGGAAAGTCGTTGGA---CAGGGTAAG---TTCTCTTCAGC---ACTGCCTAAAAGTCTT------GCT------TCTAGTGCATTTG---CAACAGTGCCAGGA------TGGAGAACTGAAAGTATCAGCAGCCAGGCTATA---AAGACTCAGCCAAAGTTTTTGTGGAGTGTGTGCTGAATTCTAA-AGTGAGAAGAACAAAAACAACTG-----------------ATAAAGTTTACACACTTGCTTTTTTTTTTCCCCCTGCTATTCTATAAGTGTGT-GGAAATGGGTCCTTCAGGGCTCTAAATCCTTTTGTTACCAAAGTGTATTTTTAAAAGTGAGCTTGGGAGAAACATCCAAAGTTATTTACCTGAGCTAGCTGGTGAGC-----------TTTAGACTAAAAACTCTCAAAGTCATCTACCTGAG
s HiC_scaffold_1 144377906 2871 + 233722169 GCcttacattttaaatgttaaaattgctctTATCCTAACTTTCTAGCATGTTCT--ACTGGTAGGCACCAAACAACCTAACTGATgaaatctagagaaaaaaaacTCCAGGAATTTAATGCTCAAAGTCCAAACTGTGTTTCTCtggttaataaaaataataattaggcCTG--GTCTAGACT---ACCCAAATCTTTTCCATAGGAAGTGAGGAGAATGTTGTCTAATGGGAACTCTCTGTCTGGGATTGGGGTTCTAACACCCAATAATCATTGTCTCTGAAGCTTGAACATTGACAGGGTGGAGTAGGGCT---AGAGATA----CCAACATAGGACCTGACTTCCTGCTTCCCAACACTCTTAACACTTGATCAATTAAC--TGAGTCACTCTTCCTTGATACAAAACTGCCTCCTAATGGGAGCTAAAAGCTACC---------CCCAGGTGGAAC-----AGAGCTAACTCCTCAACAAAGAGCAACAAGCAAGTGTGCATAtctgatttccatgagtaacccATTC----TTAAAAATAGTTCTCTGTAATTAGCAATAGAGTGTTGTCTAATTAACCAAATAATATTATGTGCAATTGGTACTCAACTGACATTTGTCTGGTTCATAATTATTTAATGTCCAGTTTTTttatattgttgttttgttttaactatGCTGGGAGTGAACtaaaggcctttgcactgagctggatgtccaactcttttttttcctgtttaaaaattttatttttattagtactttttGCAGTACAGAACATTTATAGAAACAATTACATTGTGAAGAAGAAATCTTTTTAGGGGTGAAAAAGTTCatccattt---ttatatattaataaatagttTTTACTTGCCTACTCTAGTATCAAGCATGCCTGGAAAGCATAGAGGTGAAAgttaaacaacaaaattacttttattaattcTCAAAAGTATTAAGGAAAGCAATGAATTTTTATTTAGGATGCTGACTTATTAATGGCTGTGAAAAACTCTTTTTCTGCAAAGCCTAGTTTACTATTAAGCATTATTTCCCAGTGTTCTATGAGAAAGATACTTGATATAA--AAAAGCAACCATGTTGGCTA-------AAGTATTCTGTACCAAgttaaatgtaattattacagGTATGCTGCCAGCCTAAAGATACTTGGACTGTAACTACA---TCATATAAAATTGGGGTTAAATCAAGCAAGTTAGTTTAAGAAGCATTA---CCtagtaaacatttttcttttccaattggCTCATGTATATAATCACAATGTTAGGTTAAATTTCGTAAAACTATTCACAAACAGATGTGAATCCACATCTGTGTTTTAATTCTCTGAAAAAGATGGAGGCTATTATAGTAATATACT--AGATGAGTTATGTTTCAGCTATAAATTAAAACTATCTCCATTGTATCATTCTTTCTAAGCCTTTTCATCTAAAAGGTTTATCTTTGATTCAGATTTCTCCACTTATGACACATTCTGATAGTGTCTGGCCTACTTTTACAGCTTAAAGAgtattcattaaaatgaaatacattaacATACAAGCCACAGTCAGGGAAGATGAAATTGCCTTAAATAACTAGCAAGGAAGTAGGTGTAAATGAAAACAGTTATAACTTGAAAATTAATTCAGGCATTAATACTTTGATACCAGACAGATTCCAAGCTTGCCGATTAATTATTCATCTTGAAATGCTTGAAATAGCCCTATTATTTAAAGACAGACCAACTTAGAGATGATACTGGTCATTTGAAAAGAGGGTAAGGAAAAATTATAAGGTACCCT--------------GGTACCTGCAGGTAATAAGTATATGTTATGGGAATGAATACAGTTCAAACTATAATCTCATTTCTAGAAAGTgta-caagagaaaaaatttcagTAACACAgggtgagaaaagggaaaaggaaattacATCATAAGTACATGTAATTTTTA-CAAGCTGACCTAGTTCCTTTGTGGAAGGATATATCAtgttaataaataaaatctatgttGCAAAACCCTAATAATAGAAAGATCAGTGCATGTCCCTATATTTAgatcaaatacaaagaaacactTCTTCTCATCCATGCCAATTCTCTACAATGGCAAAAGATTTGGCAGTTTCAGTGGTTGGGTTCTCCTGAGAATACGCTGTAAAGCAAAATACACTTTTGTTTGCTTACACATCAAA-GAAAACCCAGAGCT-GCAGTCATTGAAGCAGTAAAAACAGATTTTAGTCAGGAACTTTTCCAGTTGAAGAGGAAAAGAGTTCAGTATGGCTCTGAGCTCCTTCTGCATACTGCATGGAAAAATAGTAATCTACAGTGAATCAAGAAA-GCAGGGGTCAGTGACACCGAAAGTTAGTAAAGAGATAGCATCAAGGTCAAGGTGACTCTGATTAAGG--ACTTGAGAGAATTCTTGAGGTTGGCAGCT-GGAATAGCCAGGTATCATGAGAGGGATGAGCTATATGACCACATGTGGGCAGCAATCAGATGGCGAGATGAGGGATTCTCCCCAACAAGACTGACCAGGGTTCTTCCAACAGCTGGGCCATGTAGTTGCTTTAAGTCAAATGCTCCGGGAAAGTCTTAAAGAAGTTAGAGGGCCA------AGACTATATTTAGGTCGAGGAAAGAATCCTTGTTGA-CATAGAATGTAttctaagaaaaagaagaatgaagaaaagagTGTTTGCGATTAAAGATACGAAGTGCTCACACTTACAGTCCTTATT----TTGCCATTATGCACGtgcatcagcatttgttatttttaggcTGCAAATCCTTTCAGTATTAAAGGATATTTTTAATGATCTGGTT--GAGGAACTTTTAAGATTATCTGCTTGGGATTATGAATGAACCAGATAACACATGTGAAATCAAATCTGTTGGAGTCAT-TATCTGAG

a score=42292
s chr3           157202843 1187 + 160039680 GGTAAATTCATTTGGGGAAGATTATTTAAGAAAAAATCTTTTCTGGCTAATAATGCTTTAAGCAGTTCTGACACGTGAAAGTTATACACAGAAGCATAGAAAGGCTATGGCATGGTCCTTGTCA---CTCTCCTACACAAAACAAG----AACTTGGTCTCTCCCACAGGAGATGGTAGCCA--TACGACCT--ACCTGGCCTCTCAAGGGTGCCTCTGTGTGTGCCAACGTTCAAGTCTGGAATTATCTAAATAAGTAAATGTATGCTTGGTTAATTC-CTGGATTTTTAGGATTCTTTTTT----------TATCTACCTTATGATAATATAGGCCTGAA--GTACATACAGTATTTGAAGTGTTTAACCTCAAGGCCTGGGATATAGAAAGCACCCAGCAA-TGCTGGTCCTGACTTCAGTCACCGTGGACTT----------AACTTGT----CTTGTGTGTAGAGAATTGAGGGCAAGAT-----ACTTCTATTCAATGTCCACTCTCTCCAGCTCCGGGGGCGCAGATGCAATCTACTTAGATCCACA--GACTTATATGAAATGACTAGCTACTCCTTTTATTTAAATCACTGTACGTTGACAATATTTGCTGTACCAAAGGGGCTCGTGTTATTCAGCTCAACAAAGTCACAAATAATATATATTTGAAAACAAGGGGTAGCTGATGTAAGCACCAGATGGCTCCAACATAAAATCAAGGGAGCTGCTTTTAGCTCTACCCCAGGGCTCTTAAAGCCGCCTTCTCAGGGCGCCTTTATGTGTTGTGGTTTATTTCTGAAGTGACAATAAAATCGGGAAGAGCAGAAT-GAAGAGAGCACC-CAGCCTGGGCATG-TTTAACAATCTGTTCTGCATACGAG-GGGAGCATTGCCATCACTAGAATCAACAACATCTTGACACATGATTCAAACGTCAAAAATATCCCAGAACACAAGATGCCTTTGCAACAGCGAC-AGAAAGCTGAAGTCAAATCCAGACTGGGCCCGATCCCTGAAAAGC------TGTCGTCTTCTCTGAAAG-TTGAGACCTGCACAGGGCATAATATGGGGCTTGGAAACCAAACCCCTAAGACCTCCATGATGTAATTCTCTCTACATTGTGGC----TGTTAGACAGTGAACAACGCCAGGGAAGTGTCAGGCATGGAGCCACAGGAATACTGCTGCTAAGGGAAGACACT-GCTGTGTAAGAGCCAATGGTGTCTGCAGATGTAG
s HiC_scaffold_1 144382655 1190 + 233722169 GGTACATT--TTTAGGCAAGATCATGTGA-------CTTCTCTTGCCCAGTGACATTTTGAGCCAT------ATGTGGGGTTTCCAAACCAAACTGTAAAAGAACTATTGTATAACACTTCCCATTTCTTTCCCAAGTTGAGCAAGGGAAATTTCTGTTATTTCCATA-----TGGTACACAAATATGATGTTAGCCTGATCTCTGCAGGCTATACCCATATG----AATGTATAA-------------TagcaatataaaaacattttaggtTAATGCTCTGGCATTTCAAAGTTGATGATTACTGTGGCATTGTCTAATGCCTTCTGGTATAAGCTTGGATTGTATATGAAGTGTGTGAAATGTTTAGCA-CAATGCTTAAGACATAGTAAGCACTCAGCAAATGCTAGTCTTAACTCTAGACACAGGTGGTTTCTCTGAAGAGAGTTTGTTTCCCTGGCGTACAGA------AGGACAAAGTTTTAGACCCCTCTCTGAACAAGAATTTCCTGATTCTCAGTGCTGCAAA-GCTCTCAACCTCTATCCACACAGATTCGTATGAAATGACTAGctccttcttttatttaaatcacTGTACGTTGACAATATTTGCTGTACCAAAGGGGCTCATGTTATTCAGCTCTACAAAGTCgcaaataatatatatttgaaaacaagTGGTAGCTGATGTAAGCACCAGATGGCTCCAACATAAAATCAAGGGAGCTGCTTTTAGCTCTACCCCAGGGCTCTTAAAGCCGCCTTCTCAGTGCTCCTTTATATGTTGTAGTTTATTTCTGAAGTGACAATAAAATTGGGAACAGCAGAATGGAAAGGAGCACCACAGCCTCAGAATGTTTTAACAATCTGCTCTGCATATGAGAGGAAACGTTGCCATCACTAGAATCAACAACATCTTGACACATGACTCAAACGTCAGAAATATCCAAGAATGTAAGATGTCTTtgaaacagagacaaaaaagcTAAAGTCAAATACAGATTGGAGCCTGCTCCCTAAAAGCatctcatttcctcttttctgaaAGTTTAAAATCTG--TAGGGCACAACTGTGCCCTTGGGAACTAAATCTCTAAGAC-------ATACAACCCTTCATGTTGAGTGGCAGCATTTGGGAAAGTG-----TCTCTGTGAAGTGTTATGCCCAAAGCAGCCAGAAGAATGCCACTCAGGGGAGCCACCAGCTATGGAAAGGCTCAT-GTGTCTGCAGAGGCAG

a score=16833
s chr3           157204971 2177 + 160039680 AAATGTACA-GCAATCCTCACTTCCATCTGGATC-------ATATGGGGGGAATTTGCCATTTATTTATCTCTTGTGTTTATTTCTTTAAATCATTGGCATATCTAAGCATCTTCCCCAGTGTATTCCATTTCTGTGCTTGGCTTTTCTTCCTTCTATTCCTCATTGATCAATAGTGAAACCACAG-------AGTCTGGGCTTTAGAAGCCAT-TACCCAGACAGGAAAGATAACAGAACAGACTGGGAGTGACAGAAAGAGTCAACCTCCTTTCCTCTTCAGTG-ATTTACTGGACTG-----TTTACATTCACTCCCCTCTGACAATCTTGCCCCAAACAAATACTTCCACAGCTACTAGCCACACCCATTGGCCAATGAACAAGTCAGCTCCACAGCATCAGACAA-------------------TGTAATGT-CAGTGAAATTAATACAGGGGTAAAGTTGGGTGAGGCCAGGGAGCTCGTCATTAAAGTGGCCTCTGCTTTAGCTAT----------TGAATGCATCAAAAACATCAAAGTGTTCAAGAAGGAAAAGGTAAAAGCCCTG--AGTCATGTCTCTCCATCTGTTATTGATATCAGCCTTAGAAAACATTCAGAAGAGTTGTGCCAAGAATAAAAGCATCT------GCAGCCAGAGAGGCTCACTAAGCCTATCTAGATTATTTGACTATAG---AACTTGTGGCATGCCTGACCAGCATCCAGAAATGATACA-GGAGGAATCCGTCACTGAATCCTCTC-TTCTTTAGGAAACTTGCA---GGTGATTTGTGTCTTAGCACTGGCTACAATTATTCAATTTACTCAGATGTCTTTTACTTTGCTCTTT----TGAACTCTG-CTCTGACCCAGTCT--CCTGAAAGCCCCTGGCATAAGGATTGAGCATACAGTTTCCAGAGGCAGGTGC--TAGGATGGGACCTCTGCCCATACCATTC-TTCTCTGTATCACCTG-GTACAAGGTCTGTTTCTCTACACTC------CATTTCTAAGGATGGTATGACCACAATATCCACATTTCTCCTTCGTCTG-GTTCCTTCACTGTAGCTGAGT-ATGTA-AGGCTGAGTGATCTCTAGAAAGAGATTCTTTCCTCTAT----GCTGCAAGTCCAGCAACAAAGGAGCCATGTTTGGTAAAGACATCACAGGGGAGAGAGACTCCATGGGGTCACAAGGCAGAGCAGGACACAGCTTGGG----------AAAATGCCTAGGCAGGCCCTTCCTCCCCA------------------------------------------------------------------------ATCACCCC-----------CAAGGCCCTG---CCTCTCAAATGCCAC----------------------AGATAT---------------TCCATAATTCTA-CAAC----TCAAAACGTTGCCTCA--------------------------------TAATATACACAACAC--------------------TGTGGTCACCGTTTTTAAGTGAAAAATGT------CCTTGGCTGTTGT----TAGAAGTGCATGTTTT-ATGTTGTCACATGTAG---TTTATTTTAACTGTTGCCTGT-----------------ATGCTGT--TATTTACCTTC-TAGCCCAGTAT-TTACATAGCACTTGACCTACAGTAGAGGGATTCTGTTGTCTTTTAAATCTACAAATCCATAAATTACAGGTGAATTAAGCAACTGTACTCATTACTGTCAGATTTTTATTTTGACCTCTGTGAAAAAAGTGAGTATTTGTGGGAAATATTTTGCCataaaaattcaaaaaaaattttagataaaaaaaaatGACAGGGTCCTCTCATACTGTGCTTAAACATGGATTAAACAGTTTTAATCCATGGATTAAATAACTTGGGATTAGTAAGATTTGGATGCTAAAGAACCAGTGTATCG--TTTGGG------------------TTTTTTTGTTTTTTGTTTTTTTTTAAAGTATTTGTCTTTGGTAGCTTATACCTTGTGTACTCATAAGTCTTAGATTCCTCTTCATAGATACAATTAATCACAGAAGTCATGGACTAACAACATTTCTAAGTTAC-----------AATACTATATACTCAGCTTG----------GGAAGAGCACAGAAAATGGAACCAAGCTCAGAT-------GCATGGTCAGAATACAAAACGAAAAGTGTG------TCCATGGAGAAGTG-GCAGAAATGCCATCCTTATCCACCGTGACACAAGTGCTTGCTGCTGGCCTCTGCGTGTGGCCCACCCAGGCTTCCTCTCCATGGTCTGGGTTTGCCTGCT-CTGTGCTACTCATTTCCTGCACATGAAATGGAAACATGGAGAGATTTGACATGAGAGA----ATGTCAGCAAAACATTCCAAACCatatataattttaaataaaaataaGGCTCTAAGAAAACTACTAAAGAAAGTGGTGAGAAAG--AGAAAAAGGGG
s HiC_scaffold_1 144384784 2426 + 233722169 AGATGTGCATGCTGTCACCACTTCGGTCCAGAACCACAATGATACGGCAG-AATCTTCCACTTGTTAACCTCTCGACTCTATCTTTTTTAACTGTTAACATCCTTAAGCACCTTACCCTTTTTATTCCACTTGCGTGGTTGACTGTTTTTGCTTCTAATCTTCTTCAAGGGATGATAAAGGTGCAGAGCTCCAAGTCGGGTTTCTAGAAGCCATCTACTCACACA-GAAAGACACAAGG--AGACCAGGAGTGGCAGAAGCAGCCTATTCCCTTTCCACACCAGTGCCTTTGCTAAATTGCAAAATACACATGCTCTCAATTCCAATTAATTAGCCCCAAACAAATACTTCCCAgtctgttgtctctttctcttaaTGAATGAAGCAGTTAGGCTGACGGgatcagaaaaaagaagagagaatgcTGCTTACAATCTGCAGGGAAACAAGGGCACAAACAAACATGGATCTTACT-GAAAGCT-GTTTCTAAAGGGTTTCCTTCTTC--CTACTTCCGGTGTATGAGGAGATTAAAAACATAGAGATATTCCGG-------ATGTAAACACACTGGTATACACAGCTCTCCACCCATGATTAAT---GGCCATAAGAACTGCTCAGTAGA--TATCGGAAAAATTAGAATGACTTGAACAGTGACCAGAGTGTCAGCCTCCTTCTAGCAACTTTACTTCATTATTTCCCAGCTACAAATAATCTGAATTATTAGCTTGAAATGATATACCAAGGCATTTATCAGAAGGGCGTCTCTTTCTATAGGAAACTGACAGTGGGTGATTCAGGTCTTAACCTGAGTTACTTTTGCTC--TTCAGGCCTGTGAGCTCCATTTTACTCTTTATCCTGAGGGCTACCCCTTACCTTGTCCTATCTAAGAATCACTGGCTTGAGTATGAAATACTTAGATTCTAGAAAAGAGCACCTCTGGGTTTGAACTTTCCCTGTGGTATTTACTTTCTGTGGCATCTATGTAAAGATTCAATTTCCCTAAACTCTTCTCTCCTCTGTGATGATGG--TGACAATAGTATCCAC---TTGCCTTAGCCCATTTTCCCTTTCTACAACTGGGTGATGTATAAGCAGAAGAAACTT--------GTCTCTCACATTTATAGAGGCTGGAAAGTCCGAGATAAGTGA-TCACCTCTAGTGAGG--GTCTTCTTGCTGTGGGACTCTCCGGAGTCCTGAGGCGGCTCTGGGCATCGCATGGAGAAAGAGAGCAAAGTAGCCAGGCAGCACTAGCCTCCACAGCAGAGCTATTTCTACAGTAAAACAGTCATTCACCAGCAGAATAAGCTACAAATGGATTAATCTGTGAATGGATCAGACCATTCAAGAGAGCAGAGTCCTGGACTCACTCACATCCCAAGAGTCCCACCATATGAACACTGAGATATATAACTTCTCCAACATCTGTAATGCAAGCAACATAGTCAAATCATTGCAACAGTTTTCTTGATTGTTCTGAAGAGTAAAAGAGTTAATGTGTTTAAAACATCTCAATTTCCTGAAAATACATGGTAATTATCACTAATTTCAAGATCCAATATACCTTCATTATTATTAGGtaggaataaatattttaatgttgtcATATGTcaatttttatcttaatttttgggTGTATCCTTCCAGATAGCAAATACTGTCCCATTTATCTTTGTACCCTAGCATATGATGTAATGCTTGGCACCAAGT--AGGTATTTGGTcaacttttgaataaatggacttattA-----AGGCAGATCAAGTGATCTTAC-AATTActgtaaaatttttgttttaccatATGTTAAACAAATGAGCATTTTGGAGGAAAAATGTCC---------TCCATAATACTCTTGATTATAAAAGAATT-CAG---CCCATCAAACTT------AACATGAACTATACCAATTATAACCAAATACTAAGTAACTTAGAAACA-------CCTGAGACTGAAGAGCTATTGtttcaattttaagaaattttaaataaagtactacttttactttttatttt--------gtatttacctc-----ATTTATACTT------------AGCCCTGGAGTCTGCTCCATATACA----TAATCATTAGAACCATAGAATCAAAATATTTCCAGGTTGAATTCCACCATGAATACCACAGGCTCAGGCTGATAATTTCATAGGAGATAGTAGAAGAGGGTGTCAAAatcaaatctctctctctccctcagaG-ACAGAG-GGAAGGTCTATCATTCTCAACTCTAAATTGTGCTGCAGTGGTCTACTCAGCTACTCATACCCAGATCCTT-----CGGCCTCAG-----------ATCAGGGTTCTTCCTACAGAGGTAGCTGTAGTGGCTGCTGTGTCATTCATCAAATCCACAGGAAGTGGAAGCATTGAGAGATTTCTCATGAAATGAACCACGTCTGTGAAACACCACAGTCCACGTATAGTTaaagatgcaa----------aggaaaacaac-aatgaatacagctagaaagacagaaaaagagg

a score=8150
s chr3           157210922 141 + 160039680 GTCCAACCTGCCCCTAGAGATGTCGGAGGTGTGGCTGCTGCATCATATGTGTGTCAGTAGGTGGCAGAGAAGAAAGAGGCTATGTCTATGCTCAGTATTCTGACCTATGAACATATGAGTGATTAGAAGCTTAACATCTCC
s HiC_scaffold_1 194511541 141 + 233722169 GTGCACACTGCCCCTAGAGGCGTTGCAGGCGTGGCTGCTGTGTCACATCTGTGTCATTAGGCGGCAGAGAGAATCCAGGCTATGTCTACGCTCAGTGTTCGGACCCATGAATACCTGAATGATTAGTAGCCTGACACTGCC

a score=30096
s chr3           157217355 2303 + 160039680 AACAGATAAACTCTCACTTATAAAGACATTGCTATTTGCAG---TCAGTGTGCTACATGGCTTATGTCTGCACTTGTTTACTCTCCTCATG-------------AGACTTCACCTATGCTT------GTAAACCCACAAACCT--ACAGGG---GAGACTTCTGCATTCTGCATCCAGGATTTGGCCATAGGTCAGTTTCCCTTAAA--------------------TGCTCATCC-----TTAATCA----CCTTGTGTTGGAAACAAAGTTA-CCCAGGGAAGTATGTAGGCTAACCATGAGGACCTAATATTTACATATCAGACCCCTGCAATCCAGAGATTTCATGGTGACC-CACCCTCA-GGTTTCCAGA-GAAATGTAAACTAAGTTTTCTGGCAGCCTGAAAACTTCAATCTATACTGAAAAGAGG----------------------CTCCTATCATTGGGCATCAGCTA--TGCCCATGAATGTGGACCACTCACTAGTTCCTTCCCGGTGGGAAAGCTGTGGTTCC--AATACTACCCTCTGCTTCCCTGTCAAGCCTGCTGATGCTTTA-----------------TATGGA---------------------AAGGGCTCACA----------------TTGGGTCCCTACGGTTGTTGTGCCTTCTCTGT--------CAGCTTAGAGCCTGTCTTCTGAGCCCTTATCCATGCTAACCTTAGTCCTGGCAGAGCTGCATGCTCTTCATCCT--------------ACTGCCTCAGCACCACAGTGAACGGCAATCAGATCTTTCAG-TGAAACCATGGCAACCAAAAGGATTAATTTCTGCCTTGTCTCTGTAGCTCAGTCTTGTTATCTCTCCAAAGTCCAAAAGATacacacacacacacacacacCCTCCACCACCACCACCACCACTGCATCACAGCATAAAATAACATAATAACATTCTAGGATCCAAATATGACCT---AAAATACATAGATAAGAAGGGGCTTGGCACCAGAGAA-TCTGGTACCAGGCCATGCATGTAGTG------AACAATAATTAGCGTACTCTACAGAAAGATTCACTGCCAGTGGCTTGTTGTTTCTTGGTGCTTTCTTA----------------------------AATAAGATGTCTTCTTGTGCTGGAGAAAATTACATCTAATAAAGAAAAATATTCTGGTTTTTTTTACAGTGTCTTGTTTTATGCATAATTGTCTACACTGTCTGTCTGAGTGAACTTCTCTTTACC-CTGTTTTATGTACAATCAAAACTGCCCCTCTGCCACAGCTGATCCCACAGCCCCACAGTGGCTT-CAGTGATACATAGTGCCCTTATTCCTCCCTGGAGCATTG----TGATGCTGCAGGTAATGAG---TGAGAAGCAGACTCTTGGGGCCTCTGTG--GCTCACCAGGAGAGTGCACTCCACACCTTGAGAAAGATATTTCTCTGCTTACAAGTTGATGACTAAGGT-GCAAAATAGTGGCTCCCATCTGATCCCTATAAAAACAGTGACATTCTTGAAAGCTAAGC----ACTCTGTAAAACCACCAT-TAGCTGCATGGAGGTTTGTATGTGTAAAGGCCTTGCTCAGCTGTGTGCTTCTGTTTTGATAACACTCTCTGCACTAGCTGAGCATT--CTTTCTCTGACACTGAGCCCTATACTAAAGCCAGGAACTGTACCTGCTGTTGACTCAGAAAATgagagagagagagagagagagagagagagagagagagagagagagaATGAATCATGGCAAATACTTCTGTTAGTACAAAAGTCTATTACAGAAGCCTCCTGAGGTGGCAG---GGGTTGAATCTGCCTGTTTTCCAGACTGGTGAACAGAAG---------TCATTGGTAC--------AAAGGCTCTAGTGGTGGCCCAAC-------------------------TCTTGCTTC-AAATATTCTACTGTAGTAGTTTCAAATGCAGCAGAG----------------TGTTAGCAAGTGAAAAGCCAAGACAC---AGCATCTTCTCTCTCC--------ATCTCAATTAGATCCTGACCAAAACCTGACTTTTAACCTCTTTAAGCTCCTTT---------------TAGCACCAGGAATAGCATCTGTCGC--ACAGATGTTGGGGGAGGGGAATGTGTTAATAGATG--------TTATA---------------TACTAAGAATTTA-TAATATTTCCAATCTTAATTAATTTAACAGTAATAAGTTTTGCTACAACAGATACAGAATAAATAATTGCTGATCTCTTGAGTCAACAGAC-CATAA---------AAAGTCTAGAATAGATTTAATTGAGATAGTCAATTT-GACTATTACTCA-ACAAGATTTTCTAAACTATTG---CTTCTTCCTATTTTAAAAATAGTGGC-GAGTTGTCATGTGTTTAT-----------------------ACATAAAAGGGAGATTATCATTTTGAATAGTTTTTGTATGTGCTAAAAATGTATGCCTATAATTTGACACAAA----TCATTCCAGGATTGAAGTATACTTTTCTTTCTTAAAACAATTGTTATCTCTTGATTTGTAAGTTTGTAATATAAACTTTACCTCA
s HiC_scaffold_1 144392679 2562 + 233722169 aaaaaataaactagcaTTTATACAGACACGAGTATTTGCCGAGACAAGTATTTTACTAAACACTTCTGTGTATGTATCTATCATGCGTACACAATACTGGCTGTAGGTATCACCTTTATTTCCGTATATTAATGCACAAACTTTGACAGGATGAGTAGCTCTTAAACACTGAAGCCAGGATTTTATTCCAAGTAAGTTTCCCTCATAATCTCTGTTAGTAACCACTATGctaatttatcttttaaacaaCATCCCTGTGATAGAAACGAAGACAACCCAGAGAAGTCTGTGGGCCATT-----ACACTTCTTAATTATGCATATGGAAAGTAAAATCCACAGCTCACATTACAGTCACACTCTCAAGGCTTCCAAATGTGATGGACTCTGAGTCCTCCAACTGCCAGAGGAGCACTGTCTGCATTGGACGGGAATTCTAGAGTGATCCTGAGATCACTCTTATCAAGCAGAAACACCTGAGTGCCCA-------GAGCCATGCTTT---TCCCCCGTGGAGGAGAAAGTGTGGTGCCTAAATTGTACTCTATGCATCCACTCCGATGTT-CCATTGCTTTAAGAGACATGATACACACTATGGACCtgcacacaaaaagaaaagaaaggggtcACAAGGGTTTTAtgtttgcttggttttctttagtttctgt-ttttctttgtatccaaCTTAGCTCACCGTCTGTCTTCTGTGGCTGCCTCGATACTAACCTTGCCTATTCCAGAAGAAGAACCTCTTCATTCTTCTATAAACACAACATTGCTTCCACTTCATAGTGATTGGAAGTTAGAGCTTTCAGATGAAACCATGGCAACCAAAAGGATTGATTTCTACCGTGTCTCCATGACACAATCATGTTATCTCTCAACCTTCTAAAGGATA-AAACTCACACA--------------------CATCACTGCTGTATAATAACACAGG--GATAAAGCAACAACCTAGAAATCAATTGTGGCCTCCAAAACTACAAAGTCAA-----GGTTTAATGCTGGACCATTCTAGAACTGTGTTATGTGTGTACAGTTGTAAAACAACAATTAAGGAGGTCTATAAAAGGGACCATTACCCATG-------ATTCTTAGGTTCTTTCCTACAATCCAGCATCCTCAATACCTCATTCTAGCAGAATTTCCTCTTGCCCTCAACcaaattacatttattaaa---------tCTTGTTTTACATGATGCCTCCT-TCTTCCCTGTAACTGTTGAAAATGTCTGCCTCGGTGAACTTCTCTTCACCTCTGTTTTATGTACAATTAAAACCTTCCCTTGGCTAAAACCTTTGTCACAGCCATGCAGCACCCCGCAGTGATGTATTCTGCCATTA----ACCCCAGAATACTTGCTCTGATTTTCCACATAATGAGACACAAAGGAAAGACTCCCTGAGATGTGGTGATGTGCATCAGGAGATCCCACTTAGAACCCCACAAACAATATTTCACTGCTTACAAGTTAATTACTAAGACAACAGAACAACAGCTCAAACCTGATCCCTATAAAAA---TGACATTCTTGAAAGCTAAACCATAGCTTT---AAACTACAATGTTGGGGAGTTAAGGTTTACAAGTTCAAGATTCCTATTTAATTGTATAATTGTGTTATAATAGCTTTCTCAGGACTATCTGAGGAATGGCCCTCTATGGCACCAAAACTTACACACATGCAAATGATGACATTTAGGGTTGGTTC----------------------CCAGTGCCAGGGCAAAATGGAAAAATGGTGTTTAAATCATTCC-----------TTACTGCAAAACAC-AGTATAGGAATCCCC--AGGTCTTAATGCTGATTGAGTTTGCCTCTCTTCCCATTCTAGCAGTAAAAGCTGTTCTCTTCCTTGGTGTTCCAGAGGAAGGGGTCTGTTCATGGGAAAGCCACGCATGTAAATAATTGTAAgatttcttgctttgaaatgctCCATCTAAGTATACATAGATATCGTGAAAGTACATAGACCCTTTCTTCTGAGAGGTGAGGGACTAGAACGCTAAAATATTGTGTTTCTCCCATGTTTACTCTTTATTAGCTGTGggacaata---aatatttatgttctcTGTGCTACATTTTCTCCTCTATGAAATGGAATTAATAATAATATCTACTGCAGAAAGGTGTTGAGAGGCTGCAATCAGTCAATACGTGGAAAACATTTACATCGCTGCTTGGTACCTAGCAAGGACTTACTAATTTCTCCAGTCGTATCTAAT---ATAGTAATTATTTTTGCAATAACACCTGTTGAATAAGTAGTCTCTGAAATGTTAAATCAGTAACCTCATAAGAGTGCAGGGAAATCTTGGACAAATTTATTAGATTTAGTTAATTTCAACTATTATCCAGATTAAATTTCCTAAGTAATAAAATATCATTCTTTTCTTGGGAAAAATAGCTTGGTAATCTTGAGTTAATGGAATAATTTGATTTATCtaacaatataagaataaaattttaattttaaatatcttttacacacattaaaaatatatgcctTCAATTTGACAAAAAAGTCACATTTTAGGATTAAAGTGCATTTCTCCAGAAAAAAACGATGG----ATCTTTATCTATAATATTAGCCTTGAAATTTTACCTCa

a score=72809
s chr3           157221772 2392 + 160039680 GGGTATATGTATAAATGCCTACTTT-TTACTCGGAAACATAAAAGCAGGCATGGCTAG--------GTAGCTAGCAGTCATGCTATATGCTTGCAAATTATGAGATTTAATCCTTAAAATGACAAGCAGGGATAATTTGGAATTGTCCTATGACTTATGTTCTTAGTACATACTAAGAAAAATTTGACTGACCACTCTGTAACCACCCCTATCAGAAAACTACATGTGTGCAGGTTCTAGCACTTTTTAGCA----TGTTAGTCATCTAGTAAGT--TTCATCATTTTAGCA--------GAAGAAAAGTCTTCAAACTTTACTGCCTGAAAATTCCAAGACAGGTCCTGAACCTTGGCATGGTAA-ATGTGATGCTGTAAACCAAA---TAGAAATATCTCCTGAATCTTAGCTCAGTATAGGAGACAGCCTAACAGCAAACACA-TCACAAGGATC-TGTCAGCCTCAGACACGAGGTTTTA-TTGATTAT-TCTTCAGTCAGGGAAGT-TGCACATCAGAGTCCCACTGAGTACGTGTTGCATGCTTGCTGATTGTCTT-----------------TATGTATGATTAATGCACACAATGTTTTTCTTTTCTTTCCTTTTCCCTTTTTGTAGAAATTATTGAGCCTACTACCTCTAGTCCTGTCACAAGTCCAGGTCAGTATCCACATACATTTACAAAGTATGTCTGGGTACTTTTTCTGTCAACCAAGATTTCTGCATTGTCACAGAAACACAACCGGTTGCTTCTGGGCCACAGGC-ATGGGTGTGGCTCTAGTGTCTGTCACTTGT-CTTGTCTCTCTGTGATGTGTTGTCACCCTGGGTCCTATG--------AGTGGTGTCTGACCAGGTTGTTGGTGTACATTGTTACTTCCTAGTGTAC----------AGTCTGTGTCACACTCGAAGCA-TTGCAAGCTGATTAGCTAC-ACTCTGCCTTCACAAACAGAGATATAGAGAATTTGCAAAAGTTTCTGAGTAGCTCTTTTTAAACTATTTACTTTAGCTTGGTATTATATTACTATAAAGGTCATTATAAGGCAAGAAGGCATTTTAATGTTTCCACTCAGAGCCAT---CTGGGGAAGGCAGGTTCTCCCACTCT--CTGTATTCCAGGAGGAGATTGTGATCTCTTGAACCTTGTCAAGGCAAGCTGACCAACTTCAGCTATTGGC-CTTTATTTCCAGATTGTTCCCAGTTCCACTGCAGACATTT-GTCTGAAAAGATGGACCATTGCTATGAGAGTATTTTTAAGACTTGTTTTCAACTGGGAATATTTCTGAATTTGTGAATGACAAAAAAAATCAAGATAAAAGCTAATGATATGAGAAACAACCTTTATCTTGTTACATAGAAATGTAGTGCCTTATTCTGAACCTTGGCTGTCGGGCATTTAAAGAAGAAGGTCAAACCTGCTGAAGTCA-TTAGCTTTGAAAAACTCACATGGACTTCTATAACCGCTGAGTTAAAGGGTTTG--GATGTTGCCTAC-CAGGAGGAGGTATAAGTTAGTTAAATAGTTGTTTGT-CTCTTGTTCCATAAATGGCACTGAATTTTAGTCTAAAAATGAGATTTGCTGATCTGAGAAACTGAGAGGTTTAGAAAGG----AAAAAATGTATCTCAAATTGTAATCAATCAAAAATGCTTTAAATTGGCTTGGGTGATTATGAACG--CCCCACCCCCACAGTGAGATGAGCTAGATCAGGCTTAAGATTAAGTATTTAAAGAGCCTCATAGTGCAACACTTTCTGCTCAAATTACAAGTTTCATTTTTGTAACCTCCCCAAATTAAGCATATTTGGATAGACTATCTAAATCTATTTTACCACGGGTGTAGGCA---------TGACACTATT---AATCACAGTATTCTGTTT--TAGATGGGACTAATAACCCCTCAAGTTTGAGCTTAACATCACAGTAAATCAGAAC--CTGGT---------------TTGCTATTAACTTATAACAACTTGTAAAAGATCTGATTCCCATGGGTGCCTGTGACCTCCAAAGAGTGGCACATACTCAAG--TGTCTGAGGTCTTAGAATTAATTGTATGCACATACACTTTGATCTTATTTTGTCTGTCAATTCTAAA--AGATATTAAGTAATTTTCATATATTTTA---ACCAGCTAGTGTGTACATAAATTATACACTTGC-TTCCTTTTTTAGCCA-TGGCC---TTATTTGTTAAAGACTTGCTAATTTAAAAAGTTAAGGTACTTTCCTCATT-ACTCAAGTAACA---AATGGGGTGCACCCTAATTTTAAAAGTGGTATCTAGTGGCAT---TTAACTACATACTCACTTTCTGTGTTTGAGGTAGAAATTAC-------ATAAG---ACCAAGAGTCACTCTCAACAAATAATCTTTAATCACAAGTTCTGCAGTAGAAGGGACTCATTTTTAAAATGCCAGTTA---AAAAGCCAACAAGCAAATTGTTTATATCTGTAAAAAGATTTTTATCTCTCCA
s HiC_scaffold_1 144397953 2437 + 233722169 ggatatgtgtgtatgtgtttacttTCTTGCTTAGAAACATAAAAGCAGATACAACTGGTCCTCTGAGTGGCCAG--GTTCTTTGCTATGCTTGTATACGATgagattttatctttaaaaacacattttggcATCATATGAATTCTACCcacgatttttatttttaatacacagTAAGA-----------GGCAACACT--------------------------------TAAGTT-----ACTTTATAGCACCAGTGTTAGCACTCTGAGAAGGCATTCAACATTTTAGTAATTTCTTAGAAGCTGATTTTGTAAACC--ACTATCTAAGTACCCAAGTGTAGGTCCCCAATGTTGATACAGCATTCCTTGGTATTATAAATTAGAATATGGAAATGGCTCCC-AGTGTGACCCCAATATAAAAAGTAACCTAACAGCAAAATCAGTGACAGGTGTCATGTAAGTCTCAGAAAGAAGACCCCAATCAGTTATGTCCATGGTGAGGGAAATCTTCAAATCAAAGACCCCTTGTGTATATGTTGCATGACTGTTGATTGTCTTCATGAGTGTTTGTCTTTTATGTATGATTAATAcacaaaatgtttttcttttctttccttttccctttttgtagAAATTATTGAGCCTACTACCTCTAGTCCTGTCACAAGTCCAGGTCAGTATCCACATACATTCACAAAGTATGTCTGGGTACTTCTCCCATGAAACAAGAGCTTCTCA-TGTCGTACAGACAACCTCAGTT-CCTCGGGGCTGCGTGCTAACGCCACTGCTCTCGTGTCTGTTACTTGTCCTTGTCTATCTGTGGTGTTGTCTCCCTTTGGATTCTGTGGCACTCCTGTTGGCACCCTGGCTGAAAGTTAACATCCTTTGCTTCATTCTGTAGGACTCATGCAGTAAATTCGTGCCACGCTGTATATAGTCACAAGGTGATTTGCTTTGGCAAAACCTTTGCAAACAGAACTGTAGAGAATTTACAAGGTTTTCTGAGTAGCtattaaaaaactatttagttTGGCTTGCTATTACATTATTGTAAA-GTCATTATGAAGCAGGGAGGCA-TTTAGTGcttccaaaaggaaaaataactgggGGAAAACCGATAATTCCATTCCTGCTCGATTACAGTGGGAGATTTTGGTCTCTTGAAAC-TGTCAAGTCCGGGGACTTATTTTCAGTTGTTTGCgctttatttttagattgttCCTAATTCAACCTCAAATACCCAGTTTGAAAAGATAGACCATTGCTATAAGTGTGTTTTTACAAGTTGTTTTCAAGTGTGAGCATTTC--------TGAGTGAC--ACAAAATCGAGATAAGGGCTCTGGATATTAGAAGTGACTTTTATCTTGTTACAGAGGAATTTAGCAGTTAATTTTGCATGTTGACTGCTGGctatttaaagaagaaagtggAA-CTGCTAAAGTGATTTAACTTTGAAAAGTTCATAGGGATTTCTGTAACTGCTGAGTTAAAGGATTTGTTGAGGCTGCCTACTCATAAAGAGGTGTAAGTTAGTTAAATAGTTGTTTCTCCTCTCATTCCAGAAATGGCATGAAATTTTAGTCT-AAAACAGGATTTGCTGATCTGAGAAACTGAgtgttttagaaatgaaaaaaaaaaaatttctcaaattgtaATCAATCAAAAATGCTTTAAATTGCTTTAGATGATTATGAATTACCCCCACCTCCAAAATGAAACAAGTATAAGCAAGTCTATGATTATGTATTTAAAGAATCTCAT-----AACACTTTCTGGTCAAATTATAGAATACACTTTCATAACCTCTCAAAAAGCAGCATATTTGAGTATtctgtcttaaattattttatagttgATGCAGGCAAAGTTTAAGTGACACGATTATAAATAAGAGTTTTTCGCTTTATAGTGGGGGTTTAGAGTTCTTCAACTTTGAGCATTATATTGAAAC-AATAAGAACAACTAGTTATTTGGATGtagtatttctttgaattt-----aactTTTTAGAG--CTGATTCTCATGGATTCCTGTGGCCTCTTTAGAGTAATATAATCTCAGGTTTATGTGAGAATTTAGAATTAATCTTAATAGCAAACTTTGCggtcttcttttcttcattggTTTCAAAGTGAATGTCAATTACCTTCCACAAATGTTATATATTACCCAGGAGAAAGAGTGGCTAAGTGCTTACTTTCCTTCTTTGGCCACTGACCTAATTATTGGATGAAGTcctcctaaaataaaa---tagagtaccTTCCTTATCGACTCAAATAAAGAACAATGGAATCCAAGATA--TTTTAAAGAGGTGTCTGGTGGCATTTATTAGCATCATTTCTGCTGACTGTGGTTATGGGAAGAAATCCATCTATGATAAGTATAACATGATTCTTTTTCAGCAGGCCATC----------AGTTT-----CAGTAGTGGCTCA--TATAAAAAACCAGCTATCTAAAAACAATCTA--AAATAGTTCCTACCTTTATAAAGAGttgtatttcttca

a score=97797
s chr3           157224223 7094 + 160039680 [encoded data, 8157 characters]
s HiC_scaffold_1 144400901 7444 + 233722169 [encoded data, 8157 characters]

a score=35475
s chr3           157232721 4878 + 160039680 [encoded data, 5276 characters]
s HiC_scaffold_1 144409512 4455 + 233722169 [encoded data, 5276 characters]

a score=43763
s chr3           157240013 3117 + 160039680 TGACATTCAGAGATGAA--ATAGGCCCAACAAAGCTC-----------TGATTTTTAGTTACAATTTTGTTAGGCACCCAAGGAAATTTCATTTCTCCA---------ACATAAACTCTTGTTTAAAACTAACATTGTTTAGGTTCTGCATAATGACAAAGAATGAAAAATAGGTTCAGACCCTGTAGTGTCTCTAGT-CTCTGTGTCTACTCTGCTGCCTCAAGAGTAGCTGTCCACCAAAGACATCTCTCTGATAGGAGCTC-AGTTGCCTTTGAAGTGACTTTGAGTGCAACCAGCTACATCCAAATGATACAAATAATGGAATCCAAGAGACCTGGCAGGCAGCTGGGTAG-AAGCACCC--ACAGCTCTCTCCACTGAGTGTTCTC---ATGGTTGAGGAATGACCCCAGGGTCTCCTCTGATTACAGCAAATGAGCTCATGAGTGGCCATGAGTGAGCACACTGATTGGGCTTGGCACATTCCATGATCAGTTACACATTAGCTTTTGGAAAAGAATGGCCAGACTCATTGGGCAGAAAATACAGAAGCGGGGTCTTTGGCAGAGGATGGGGATACACAGCAGCTGGAGGAGTTGCATTCCCATAATTTACTGGTTGGGAGAGCCAAG-CCAGACCTTTCATGGCTGTGC-TTCCCACATCATTTTTGGTGGGACTGCAGGTGGGAAAAGGAGACCACAGCAGTCCCTCTTTA-GGCAACAGTAAAGCGGGGGGGGGG---------------------------------GGT--------------------------------GGACATTTGCTCCA-GGATGACTGCAGACCAGGTCTGTCTGGAGATAGGATATTAATTTTCACTTCATAAACTAATAGACC-TGGGGTGTTGACTAGTTCAACATACACTCTTCCTT---GCTAGAACCTTTCTAAGCT-GAAGGAAGTGCT----------AGCATGTTTTACAAGGCAGTAAGTTTGATGGCCATAAACTTCATCATAGTGGGAAGAGAGAAGAATGACTGGACCCTCCCAAGGAAGGGAGCTTTGGAATAAGGGCCACATCCCGGTGGTTAGAGAATATCATGTGCTTCTGTCCCTGTATTTTACCAGTTTG--------------------------------------------------------------GTTTTACTGATGGCCTGTGCTCACTAGCAGC-----------AAGTTTTAACTTCACACAGTATTGTCTCTGTGAAGGATGGAGGTTCAAGGTGAATACTAGCATTCTTGACTAAGCCAT-GGACATATAGAGTTACATACC----CACCTTGAAGATAACCAGACATTAACAAATAGTAAAGGGTTCTATGATGAGGCCATGGGACAGTAAA----GGTTTTGCTTGGAAATGTGAGATATTTGTTGGATCTTCACATCACC--CTCCTCCTAAACAGCATGTATTTACATCTAAACACTTTAAAATTC----TATTCTATCCCTTATTTAGCATTTTACAACCTACAGCTTATAAGCTATAAGAAGAGCATGAGTTCTTAAAGGCCCA-AATTTAGAGAAACAACAAA--TCAATTTTATCCCAGGAATCAACTTCACTGAGAGTGATTTATTCCTAAGAATAGATT-AAAACCCTGTTGCCaaaatatttttaatttttttta----aaaGTGAAGTTCTAGAAGTATAGAATCACAT----------TGTTT------------CATTTTCAAAGCAATCCAGAAACGGTACTAT---TTGCAAATAGACATATAATGCAAATGATTGCATATGATACTATTTTGGAAGACTAAG---GTGAAACCACAAAGATGGCCAACAGTTCTTGTAGTATTTGCACAGCTTCTGTGGCCAAA---GACTGCTtctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtTCCACATGGAAACAGGGAT-GAGGCAGCTCCATTGGGTCATTGG-----CACCTATCAGCCCCCAGTTTGAAG-ATCTAGCAGAT---------ATCACTTCAGC-----------------TGGCACTTTTGATATTAAAAGGCTTTTCTCACCATTTCTTGCTA----GCAAAGAATGTCAGCATCATGGGAACCAGACACATCATACTTTGGTTTTCTAATTCCTTAAAGTTGGCGCTAAAGAAAAACCAGATTAAGCAT----AGTCTTGATGCACTGTTTTGATTGAATCTCTTCTCCAGTGTTAGGAATAGATGTTAGCAAAGTCTCAGGCAGTTTAAGGAGCTGTGAAGGGTG--GTACAATGTGGAGTTT--CTGCATAGTGA-AATTCACACACTTATTCCACTGACAGGATGTCATAGGACTCTGGTGA-TAGATAATGAATTCATGTCTTGTTAC--------TGTACATCTCCCTGTC---------------------ATATGAACAGAGCAGAAGATAATCAAATATTCATCTTTTATAGAACTATCCCAATTTGGGGTCTTTCAGGGACCCCTGGGATGCCTGCGTCAGATGTTTTTCTTTGTT-------------------GAAAGCATGACACTTAGATT----AAAAAGAATGCAGACTAGAA--CCAAGCCACAATAAAAGAAAAAAAAACCTATGAATCCAAATAATCACTTCATCATCTATGAAAAAAGTCAAAGGAATGCAAAGAAGGCAGGATATATTTTTCTAGGAAGGATGTC--AGCCTTCGGTCCAAGTGTACCCTCATTTTTCAATCCCCTCATCTGCAAACTTATGCTACATTGAAG-TGAAATCCAGACAGACTTGTTAGCATTTTTGGTCTGAAGACTGTCTTCCCAAGCTGGTCCAAGCTCCCTGTGAGCCCACCTCTGGCCTGTAACTTCTCAGGCTGGTCCCAG--CACAGTGTGAACC-CACTCCTGGCCTCT-AGCCTGTCTGTTCCCTCCACATCCTGTGCTCTCCTAAGCTGGTCCCTGATTCCTGTGAACCCACCCCTGGCCTCTAGCCTCTCTCCTCCTTCCACGTCTTTGCTCTGGCTCTGCACTGCTCAGCTCATACTACACTTTGTTTCCTCTTACTCTGTTTTAGAATGTTTCACGTAACTTAGAATTAGCCCTTGCTTCCTAACAGAGCCCAGCT----CACTGATGGCATCTTTCAT-------AGAAAAAGATGTAGAAAAATTATAATTACAAGGCAAACGATCGGTCACAAACCACGAGT-TATCAGTATTCTCC---------TAGTCACTTATAACTGTAAGTTATGGAAGAAG-AGAGATCCACTTTCTAAGCATGAAGCCTCTGGAATACTTTTATGTC
s HiC_scaffold_1 144418259 3138 + 233722169 TGACAT--ATAGGTGAAGTATAGTCCAAATAAACCCTAGGAGGagggttaatttttaaaaatacttt--------acacACATAGAGTTAATTTTtctacataaaaggaaaaaaacttttgCTGAAAACTAACAATGTTT---TtaagaggagagagacaggatTAAAGAAAGCTTCCAA------AGTAtcttcaattctttatattcATCCTGCC-----------AGTGATCAGCAGAGGGCTTCTCACTGATGGGGAATGGATTTGTCTTTGAAGCGACTTTGCATATCACTGGCAGTATCCAAGGGATGAAAATAACAGAAGCCAAAAGACCTGGCAAGCAGCTGGGTAGTGGGCACCCCTACAACTATCTCCACTGAATATATTCCCTGTGGTTGAGGAGTGACCTAGAGGTCTCCCACGATTAAGGCAAATGATCTCATGAGTGGTCATGAGTATGCACATTGATTGGGCTTGGCAGATTGCATAATCAACTGCAAATTAGCTTTTGGAAATGACTGGCTATACCCAATGggcagaagaaatgaaaggaagaggATTGGCAGACAGCAGGTACCCATAGCAGCTGTATGAGTCACAGTCCCACAATTTACTGCTGCAGGGAGCCAAGCCCAGACCTTTCCTAGCTGTACGTTCCTTTTTGATATTTAGAGGGGTTGTGGGAGGCAGCCATATCCTCCAGCAATTCATCTTGAGGGTAGCAGTAAAGCAAAATGAGGATTCCTATTATGCTAGTTTACTTCTTGAATCAATGGTACTCAGATCTCTTTTCTCTATATACAAAAAAAGCACATCTGCTCTACCGATAATTGGATACCAGACTTGTCTAATACAAGGATATTAATTTTCACTTCATAAATTAGTAGACCTTGGGAAGTCAACTGGTTCATCACATACATGTTCATGCAGCAGGAACCTTCCTAAACCAGAACGAAGTGTTTAAAGATAAAGGTATGTTTTACAATGTTATGATTTTGAATTCTGTATCCTTCCTCAACACATGCA-AGAGAAGAATTGTGAAACTGTTCCAAGAGATTACTAATTAG-ATGACTACTACCTCATGACTATTAGAGGA-GTC-TGTTTCCCTGTTCTTATATCTTACCAGGCAGAAGAGTCACAGACATACAGAAAAAAAGTACAGTTCAACAGCCGTTAATGAACTCATGCTAAAGTCTTAGAGATGTCTTAGAGGCCATGGCAGCTATTATCTTATGAGTTTTAGTTTAGCATATGCTAATTTCTGTAAGAGAAGTAAG-AAAAGGTCATTTCTTCCTATCctgaacaaaacacagaaaatatataatt---tatcattataTCTTGA--Gtaaatagatatttaaaagta------GATTCTA-------ACCCAAAAACAATAAAGCCGGGTTTTATTTTG---CCTAACTTATTTATTTGATCTGTACGTCACCATTTTCTCCTACAC---------TCATGCCTGTGCATTTTACAATTACATGTATTCCATCTTTTCTGTGGCTTTGTAGAAATTGTCCACTATATGTTAAAAGAGAAATCTGAGTTCTTAAAGTAACACAATTTAGGGAATCAACAAAGCTCAAGTTTCTCCTGATGATCGGCTTGcctgaaaataatttattcataaaGATAGATTcaaaatcttgtttcaaaaaacttCTCATGTTATCTTAAGACAAACATAATTTTTCAATCTGTAAAATGGCAGTAAATATTTATGCTTAAAAGAATAATACAGATTTCAAGCAATTCACAGAGTGAACCTTGTATTTCTGATATGTGTACAATTTATACAA-AGTATAAAATCTTATTTCAAAAGACTGAGCACAGGAAATCATAGAGATACTATACATTTCTAACAGGACATGTATA-TGTCTTTAATCAAAAGGGGCAGTTTCTCTTT---------------------------------------------------------------------------------------------------------------------------------------------ACAAAAGAACAGGAATAAAAATATCTCC----TGTCAGTGGACCAACACTTACCAGCCCAGTGTGTAAAATACTTAGCCAGTACTCAGTAAATCGCTTTAACGACATGTAATTTCTTATGggaaatttcaacataaatgagcCCTTCTCCCCAATTCATTCTGTACTTTGGGGTCAGGTAGAGTTAGGGAAACTGGACCCATTATATGTTCCTCATCTGATTCATAAAATCTAATGCTTTAGATGGA-CAGATTAAGCACGTCAAAACCAAAGGTATCATTTTGATCGGTTGATTTC-CTAGCCTTGAGAATAGATGTTAACAAAGTCACGGATG--CTAATACCCATTAAGGGGTGAAGTGGAATGTGCAGATTGCTTAGACAGTGAGGATCTACTCACTTATTCTACTGATGAAGTTTCACAAGACTCTGCCAAGTAAATGATGAATTCTCACCCTGTTGCTGATCTATTGCGCACCTCCCTAGCTCAGCTGGGATCTTTTGTGGGAAAGGAACAGAACAAGACATCATCAAACACTATGGTTTTATAGAGTTGTCCCAATTCAGAGTCCTTTGGAGCCCTCCAGGATGCCTATttgtgatgttttttttttttttttttttttttctttctgaaaaacaCTATCTTaggatttaaaaagaagaatgtaGTCTGCAATTCCAGCCC------AAAGAAA--------TATGTATCC---TGGTTCCCTTATCATTTAC-AGAGAAGTAAAAATAAGTCCTGGGAAAGAAGATATATTATACAAAGAAATTTTACCAAACCCCTGGCCCA---------CCATCCTTCCTGGCCCTCTTCTACCAACAGCTACTGTGCTCAAGCTGAAAATTAA------CTGTCCATGATTCTAATTTCAGGACTTT-------------TGAAAGTTTCC----------------ACGAATATCTTTTCAGCCTAATGCCAAATATCAATATGAATCACATTATTGTCCTCTGAATTCCTCTGCTCCTTCTAGTTCCTTATGTCATTTAG------CTCTGTTTAGTG-------------AGCTACGAACGACTCT--TCCTTCTA----TTTTCTCAGA------------------------------------------TCTGTGTTAAAAAATCTCACCTGATCTAGCATGAGCTCTTGTTACTAAAAGGGGCAGaaattctgtattgattatttccaCCATTGGtagaagaaagaaataggaaaaagttACAACTAACAGGTATATTACCGATTTCAGGCAGGGAACACATAGGTAGTTCACAGGTAGTGTTACtcagttaaa-----aatttttagataaaGCAGAGATTTATTTGCAAAGCATGATGCCTCTGAAATAATTTTCTGTC

a score=27093
s chr3           157249698 803 + 160039680 AAATGTTATAGCCTTGTCACTGGGTCTAAACAGAATAGGTTTGTTCTGTTCTACTCAGCCCCTCTTCTGAGTTTGTGAAAGATATTTTAATATCAGGAAAATGTGGACCTAGTCAC---AGTGGAAGCAAGAATCACTCTG-------------AGTTTCATTTTTCCCATT------AACTGTA------------TTTTTCTCAGTATTAGTAGCCCTGAATGTCTCCTTCTCT-CAAGAAGGGAGTTGAACTAGAAGACTAAGGTTTATAAGACC---TGCCAACTCTCTCTCAGCTGCAACATTGTGGAAGATTATCAATACCCATGGGTAAAAACAAATAACACGTTCCTACAGGGGAAACCCAC--ACTGAGAATCCAGCAATAAATTTTTGTCTT-GAACACTTGAGCTGCACACACTTTCTGGTAATATCTATTATACTAAAGGCCATTTGTAAGGTTTCCTGATCTTGATTTATTCCAGTCTGGGATTGCTTTCTGAAGGGATAATCTCATTTATGATATTGCCTTTTTAAGATGGAGCAAGCATTATAAAGAAAGATAAATTTACACTGCCAACTAAATGCAAATGATCGCTATTTTGAGAAAAGCATTTCAAGACTCTCTTTTATACAGAGCTATGGAGATTCTAGTATGTCTAAGAGTTATAGACAATAGCCATGAATAAAATAGGTTGCCACCAGGGTGTGAAAAACAA-AATACTGTATGAAGGGCAAATTATATCCAAATTGTTCTAGAAGTTAATACTTGGCTCATATTTTATCCATGTGCCCCCCCCCCAAAAGTAATCTTTAGAAGGTTCAAATCACCATGGAAATT
s HiC_scaffold_1 144431261 813 + 233722169 AAAAACTATAGCCAAGTTGTCAGtttcaaatattaaaagtttATTGTATTC-----AGTTCCTCCAAGAAATTGAATATAgac--tttcataaaataaaaatttgcaccAAATCACTACAGTGTAACAAAGAA--ATTTTAGTAAATAAGAAgtagtttcttgtttttttttttaagaaactgtaAGATTTTGGATGTTTTGCACATCTTCTGCAGCCCTCATTTTCTCCATCGCTGTAGAAAAAGAATTGCATATGAAGACTTACATTTGTATGGTCCTGTGCCAGCTTGTGC--GGCCCCAAAAG-ATAGGAGATTATTAATACTACTGGATAGATGCTGCTAATATATTTCTGAAAGGAAATCTTACCTACTGAGAATCCAGCAATAAATTGTTGTCTTAGAACATTTCAGTTGCACACACTTTCTGGTAATATCCATTATATTAAAGGCCATTTGTAAGGCTTCCATATCTTGATTTATTCTACTCTGGGATTGCTTTCTGAGGGGATAATCTCATTTATGATATTGCCTTTTTAAGATGTAGC-AGCAttatacagaaagataaatttgtgCTGCCAACTAAATGCAAATGatcactattttgaagaaataatttcagGCCATTATTTTATGCAGAA----AGAGATTTATATATGTTTAAACTTTAGAAgcaatag-aataaataaaatcagttggTTCTGGAGATTGAAAAAAAGCACCATTATGTGAAAGG----------CCATATTGTACTAGAGGTTAATGTCCAGATGGTATTTCAGCCATGCACCCTAGT----GGAATCACTTTTAGAATGCTGACATGTCCATGTACACT

a score=20694
s chr3           157255415 1263 + 160039680 GGAGACAACATGCATGGGCTCGCCAGTCTGTGGATGGTCAGCTGC---AGTAGCTTGAAGATACACATATAAGGGTGCACACTCACATCCTGGC----------------TGCAGTAATTGTGTCTTTTTATAGCAAAGGGGATCAATAGAGT----GACTGTTGGTTTCT-AGAACAAAGCAAAACAGCACAGAGGGAGAAAGCATGTATTTGTCTTGTGGGACCCTGTGAAGGCTG---CTATTCAGCA--------CTGAGGCT--CTTGA---------------------------------------CAGTGCCCTGGGTTTCATTTCTCACACCCTTGGGCTCCCTACAGGTGTTGATCTTTACCTATGTGGATTCCAAAGGGAACAGTCTATAAATATAATCATTATCTGACCACAGGAATGGCTCCCAAGTCTTTCTCTAAGATGTCTACGA-CAAGTGTCAAAATATATACAG-GAAACAAA--------GGCTCCAGTCACCCAC-AGGGGAACAAAAGGACTAGCAGAGACCTCTGGAAG--TCTGTTGAGGGCTCAGCCTCCTGCTAGCCCTGTTT-----TCTCTGGAG----GCTTATTAACACCAACTGCAACAATTACACTGAAGTGACCAGACACCTT--------GATTCTATACACAGGACTGAGTAAGAGGTGG---GAGGGAGCGCTGCCCAGTGCAGGAAGGGTGTTAGC--------TGCAGGCTATGACAGCG----GAGGAGG-----------GGCAGGAGCATGACTCTGG------AGGAGGCA-GTAGCTAAC-----------------------------CTGCCTTCAGC-CTCTGCAGTCTCCAGGGAGACAATTAAGGCAGTGTCACCA------------------------GCCCCTGTGAAAGGCGAAAAATAGCTTTTCATACCCAGTTGTCAAGGACCCTGATGAACAGAAGTACCTGCCAACTTCTCTGCCCTAAAGATAGGATTTCCAGTGAATATCAACAAAATTTACTGCAGAA-ACACACAAAAGAGAGTCTTTGTAATGTCTTCCAGTTACAGACAAAAAAGCACCACTGAACAGGACTACCTGAGTTAATATTTCCTAAGCTGAATAGGTCAAGCA-----tttatttttattttt---atttttattATTTTTAGTATATGAACTGTTCACC-AAAAGCTTGGCTAAAATTAAAATGGAT-------------------------ACATCTCAAGTTAGTACAAAGAAACTCTCACCACTTACAGAAAAGC--CCAGTGAGATGA-ATACTTCTTGTTCCAGACATGAGCAGAAACTA--TGAATTTTTTGGCTGAAC------AACATttgagggtctctaatgaacccttagttttggcaactcactaaatgccttcatgggact-------agaatctgtgtcagtagatacaacttattacagctaatggacataca
s HiC_scaffold_1 144439399 1441 + 233722169 GGAGA-AATGTGATCAAGCTTTCCAGTCTTTA------CAGATGTCATAGTATTTTTATGTTGTACACAGATGTGCGCACGTCCactacttggaaaaaaaaaaaaacagacacagtCATTGTGTCttttaacagcaaaagaaatcaaaagaataagAGAGTGCCAGTTGCTTAGAACAAAGAGGAATGGGACCAAGAAAAAAGGCACATATTTGTCTTGTGGGAACCTTTGAAAAACATCCCGATGCAACAGAGACAGTCTTTGGCTTACTTGAAGAGAAAACACTGTAAAATGTACAAGAAAAGTACAAGATCATTGCAATAGTTTTCCCTCTTCATGCCCTCCGGCTTCCAACAGATTTTGATCCTTAACTCTgtgagtttaaaaacaaa--atccctgAGTGAAAT----ATC-----------ATTGTTCCTTGGCCTCTCTGTAAGACATCGGAGATCAAGGACCAAGATGTATACAAAGAAACAGACATAAGGAAGCACCCGTCATCTGCTAAGGGAACCAACGCCTCAGCAGAGCAGGCGGGGAGCTTCCAGCAAGGGCTTTACCTTCCACTAACCCTGCTTCGCCTTCACAGGGGCTCTGCCCATCCACCTCAGGCGCAGC--TCTGACTAAAACCACTGGGCGCTTTCTCCCAACAGTTCAGTGGACCGCAGGAAGTGGGAGGTGAAGAGAGGAAGTCCC-CGCAAAGCAGAAAGGGCGAGGGCAGCCACGCTGCAGGCACAAACAGGGCTATTAGAAGGCAAGTCCACGCTGCAGG--CACAAACCAGGGCTATTAGAAGGCAAGTAGCAAACAGCAGAGGTGAGAGTCGGAAAATGCCATCTCCCCCTCAGCTCTCTGCAGTCTCATGGGAGACAATTAACGCAGTGTCACCAAAAGCAAGCCTCAGCCTTTGACCAGTCCCTGCGAAAGGCGAAAAATTGCTTTTCATACACAGTTGTCAAGAAACCTGCTGAACAAAAGCATCTG-----------------------------CCAGTGAATGTCAACAAAATTTACAGCAAAATACTCATAAAAGC-AGTCT---GAATATCTGCCAGTTCCCT-CATATTATCAATATTCAGCTAGGCcaactgcttaaaaa----aaaaactgcacaggttaagcaagttttttttttttgtttttttgtttttttttttttttaatacatagaATGTTCACAGAGAACCTTGGTTAGAATTACAATTTATTTGAAGGCAGTATCCTTATTCAGGAACATAGCAAGCTAATACTCAGCAG-TATTGCCGTTTGTAGACAAGCCACCAGGAAGAAAACAACCTTACAACTGAATGCATGAATAGCgatcatttgtgtttttattctgGGCCTGCTGCAATTTGGACTGTTCCCAAACCACTTTTGGTTTTGGCAGTCCATTAGAAGGACTCACAGAACTCACTTAAAGGTGTTGTACTCTTGGTTACGCTGTATTACAGCTAACAGATACACA

a score=64818
s chr3           157267738 2034 + 160039680 TTTGAACACTGAAATTAAAGCATTTTAAGGTCTTCATTTTTATCTCATATATACTAATTTA---GAAGATGTCCAATCTCCATCTCTTTCTCAACTGGTCCCTCAGTTGTCCCTTCTGAGATGCCTGATCACTT-CTGATCATGTCCCAGGCTGTT-------AATTTTCCCCTGCGTTTTGCAGTGAGCTTGGAGTTTCTGATGAGGGCTT---GTTTCTTCTCTCTAGATAATTCTAATTCCACTTTTTGCTACTTGCT--CAGCCACCTGTTCCCCTTCAGATACTGAATCCAACTGAAGGATTTTTCTCTCTCAGAAAGTTAAACATCTGTTAATGAAAAATAACCAGAAGTGAGGTGCTTATTAGAATTTAATTAGAGCACAAATTGTGTTTTTTA-AGTAGTTTCCACTGTGGTTCTGCTTACGAACAGTGGTGGGCTCTGTTTCACAAATTC--TAACTTTATGCCTGTGTAGTAACCAAATTATCTTAATGGGTGTCCGAATGACAAATTAGACAAATGCCTTCCCCC-GAGTCATTTTCTGATAAAGACACATCGCTT-AGTTGCAAAATGACAAACTATGTGTTC-AAGTGACAAATCTTTTAATTAAAATTTACAAGCGGTTAAATGCTGTTTGACCCAAACGGAGGCTGTTATCATGAATCACTTTGAGAGGACGT-TGGGCCTTTCGGGAGGATCGATCGTGATGGCCAGAGCCAAAGTTGCACTGTG-----------CAGTCCCCT----------GCTTTAGAGCCATCTTCAGGTTCACAGCAGCCTTTACCTGGTTC-AAAAGAACTTCAATCTAGTTGAAAAGAATTTAAGAGTTCCAGTGAGTCTTTAAACTCTATTCAGCTTCATGAATATTTAATGTCACGTTCAGTGTTCAGGCAAAACGTTCTTCCATCTTAAGAGAAAATAGCTAAACTTTTGATGAGTTATGGTTTTT-ACTGCATAT-----------------GCAATCATCTTTCATGAGAAGGCCGGGTAGGTTTTATTGTTTGAGAATAAGGGTGGCCATTGCATTTACTCACCAATACAGTAAATGTAAAATTGCTTAAGTAACATGCTTTATTATTTATGCTGGCAACCACATAATGTGAGGGTAGTTTCATAAAAAATATAAATTAGAGAACTCTCACGTGCC-ACAGGCTGTGGCTCTGTTTTATGGCTCTGACTTAGCTGGTGTCCTTCGGCTTCA----------------------GTGTT-------TATTGCAA--CAGAGGAGGCACACAC-----------------AGCACAGCGCCCCCTGCAGACTGAACTGCACATGC-ACACCCTC----------TCCTGGGGATGCTT--------TTCATCCTGGCTTTCTTCTCAATGCTTCTTC---TCCATGTCAGGGCTGACTCTGACATGAATAA--TCCTTATTTGGTTTT-GGTATCAATGCTATATACACTGCACAAACCCACTAGCATGTACGCA-----CACTGACATGGGGTGAAA-------ATAATAAGTATGATATAAATAAAATTTTAAGACACA-----TAATAAGA---CACAACTAAAATATATTCAACCTCTCCTCTCCTATTATATAAAAAAGACAACAAAGTTACCA---GGTCACTCAGAGTTGTTAAGATTATAATTATTTGATATTATTTC------ATGGCCTATTTTGGTTTTTA--------------AAAACAA----------CCTTGAGTTTTTAATCCTCAGATATGTTAAAAAGCATGATGACTAAGCATGCTGAAAGATGC---ATAGTTTAATAGAATACTGTAACAATGTATCACAGTATGCAATGGAACTCCATTTAACAAGTAAAAAGCCAATG-AGCTTGATTTACAATGTCAG----CAATGGTGACCAC-----------AACTCAAATATGCTATAAATAGCCTGAGAACACAGTGGAGATCCC-----CTGGGCCATACTGTAATGATGTTGACAAGCAATTTGTTTCAAACAGGAAAATATTTTATAAATGGTCAAAACCCACGAACTGTTTGATTTTTGGTTGAGATTCATGGTTCAGCCAATGGGTTAGCCATCCTTTCCAGGGTTTTTGAAAAAC-TGCAGCCTCTAAATATCCAC------------TATTTGTCAAAACGCAAATGAGAAGAATTCTACCCAATTAAAGTAGTTAGTTTACTTGTTAAATttt
s HiC_scaffold_1 144447091 2208 + 233722169 TTTGAATACTGAA----------TTTAATGCCTTTATTTCTTCCAGATACATGTTTCTTTACAGAAACATTTCAGATTTCTGCTGTTTCCTTAATTAA---ATCAGTTGTCCCTTTCAGTCTGTCCAAGCTCTTTCTGATT-TGTATTAGGCAGACTGCAGACAGGGTCTCGGTCAGGTCTACAATGATGTAAGTGCTTTTGAtgaacattttgggttttttagcCGTAGATAATTCCAGTTCCACTTACTTCTTTTCATTTACAGCTCTCCATTTTCTTGTAGATACTAAATTCAAGCAGAGGATTTTATCAtctcagaaagttaaacatttgtTAATAAAAAGTGACCAGAAGTTAAGTACTTATTAGAATTTAATTATACagtaaattatgttttttttaatagtttacaATGTGATCCTACTTACTAAGCATGATGCGCTCTATCTAAAAAAAACATCAACTTTATCCTTATGCAACAACCAAATTATCTTAATGGATGTCCAAGTGTCAAATGAGATGAATGCCTTCCCTCTGAGTCATTTTCTGATAAAGACACACTGTTTTAGTTGCAGGATGACAAACTATGTGTTCCAAGTGACAAATCATTTAATTAAAACTTACAAGCGGTTAAATACTGTTTGACCCAAATGGAGGCTCTTATCATGAATCAGTTTGAGAGGAGGAACAGGCTTTTCAGAAAAACTGATT--------CCAAATCACCCCAGCACTTTGAACATAACACACCGTCTCTTTACCGTGGTGATTTTGAACACCTCTTCAGGTTAGAGGCAGTTTTTACCTAGTTCCAAAAGAATTTCAATCTCATTGAAAAGAATTTAACTGTTTCACTTAATACTTAAACTCTATTCGGGTTCATGAATATTTAATATCACGTACAACGTTCAAGCAAAATGTTCTTCTATCTTAAGAGAAAATAGCTAAAATTTTGATGAGTGATGGTTTTTCATTGCACATACAGGCCAATGGAAATTGCAATCATCTTTCATGAAAAGGCTGGGTAGTTTTTATTGTTCGAGAATAAGGGTGGCCATTGCATTTACTTACTAATACAGTAAATGTAAAATTGCTTAAGTAACATGCTGTATTATTTATGCTGCCAAACACATAATGTGCAGGggttttcataaaaaatataaattagagaAATTTCACATGCCGGCAGGCTGTAGCTCTGTTTTATGACTCTGACTTAGCAGGTGCCCTTCCATCTTAGCCATCCCCTGTAATGAAGTACGTATTCAAGCAGTATTGAAATGCAGAGAAAGAATAAGATGGATGGAAGGCAAGTGAGCTCCTTTCCCCCGTGACTCTGTACTTCTCAAGCTCCATCATCAGCAGTTAATGACTTGGGATTCTTTTCATCAATTCATCTCAGCTTTTCGCTCAAGGTTCCCCCATTCCAAGGCCAAGGTAAATAATGTCTTAAGAAATGTGTTGATTCAATTTTGGGTAGCAAGACAGTTAACCCTG-ATGGATTCATCAGC---TATGAAAAATTCACTGATGAATAGGAAAATCCATTTGTAACCAGGATGAGATATAT---TCCCTAGCACCCACTGTCTAAAATGACCTCATAAGTAGAGTAAACTTGAGACTT--------------TAAGCAATCCATTTGGGATCCCCTCTGTCTATCAAGAACTATTATCCCTATTCCTATTCCACATTCCTTttcttcaataaattttcctaccttcaaaaaaataaataagtaaaacaacCAAATATTCCCTTAACTTTCTTACCCTGAGTTATAcgaaaaaaca--aaga-taattgtGCTTAAAATTacaagatttttttctagaa----ataataatttattatttaaaacatgCTGAGtccatttaaaatacaaaaagctaATGAAGTTGGATTTATAAAATCGATATTCAATGGCTACCACTAAATACTTAACATTTAAATGTCCTACGGGTAACTGAAAGGCTTGTTTGCAATTCCAGTTAATTTAACAGGTAGCTTTGATTTTGACAAGCAATTTGtttcaaataggaaaatattttataaaaggtc-GAATGTATAAAATGTTTCATCCTCAGTCAAAATTAATGGTTCACCTAAT--GTCTGTAGTGCTTTTACAGTTTTCTAAAAAACATACAACCTTTCATTATCTATAGCAGTCATAAATAATTGTCAAaatgtaaatgagaaaaattctgccaaattaaaataattagttCACTAGGTAAATTTT

a score=26972
s chr3           157275718 849 + 160039680 CCCAGACACCTCCCTGGCTACCCATAGTGGCAGCTCACAGAGATGCCATAGAGCTGTTAAAGAGAGAATTAGAAAATATTCTGT-------ATCCATAAAGCCAGGCTATAAACCCAAGCCTGTACCACCTGCCCCCCACATGTGTAATGGCCTCCACAGGTCATATTGTCACCAGGCTGCTGTATTCTCaaaatgt-attgagatacttggggtatgaaaggtgccatataaaACTGAATTTAATTCCACACTCTTCCAGTAATTTGCCTCATAAATACTTCTTGAACTGGTGAAATACTTTCGATTATAGAAATAAAACTTATGTATTCACAACTTATGTGTTATTTCATCTTCTTGGAAGTCAAAGGACTCTTCCTGTGTTTGTGATACCCAAATAAATCTGCGGCAGACATTTTTATAACGGCTGTTAACACAAGTGACATTGGACCCAGAGTTAGCTCAGTTACCTATTGTGTTTCTTTTGCAATTATTTT--ATGTATATTTCCTAGTCATTTTG-AGTAAACAGGAT-ATATTTTTCACCATTAATAATTCTTTCTTTCTGCCTAAAACTCATAATTTAATCTACAAGCCAAGAAATACTTATGTGAGGACATGAGTAAGAAA----------------------------GGGTTTCTGAATC-TCACTGAGGAGAAAACGTGA--------------CCGCACTCAACCTGCTCCTGAGGCAGAGCATAGCTCTGACTACCACTCAAGTCTGTCTTCACAGCATGATCTTCTTTGAA--TGTTTA-AAACAGCTCATTTGGCATATCTCAGTGCAAATCCTGC-TGGTCCTGAATATGCACTGGAAATCTTCGGTACTTAAGTTACAAGCATTAGAAACTACTTCTAAACACCACTATG
s HiC_scaffold_1 144467942 882 + 233722169 CTCAAACAGGTCCTTGGTAGC----AAAGGTAGAATATAAAGATGCCACCAAATGTGTAAAAGATGGGCTGCAGAGTGTCCTGTTTTCTGAATACTTGAAGCACTGCTCTGAATCCGTGCCTGTATCATCTGCCCTTAA-ACGTATAATGACTTCAGC--TTCCTATCATCACCATGTTTCTGTACTTTCAAAAAGCCATTGAGATACTTGAGTTATGAAAGATGCCATATAAAACCAAATTTAATTCCATAGTCTTCCAGTAATTTGCCTCATAAATACTTCTTGAAGTGGTGAAATACTTTCGGTTATAGAAATAAAACTTATGTATTCATGACCTATGTATTATTTCATCTTCTTGGAAGTCAAAGGACTCTTCCTGTGTTTATGCTACTGAAATAAATTCTCTGTAGATACTTTTATAAAGCTTATTAGTCCAAGTGACATTGCTGTTGGAGGTAGTACTATTATCTGCTGTATTT-TCCAGCAATTACTTTTGATGCAtttttcttagtcatttttcAGTGAATAGGCTcagtttttttctcattaatgaCTATTTTGTTTCCCTAAAAGCTCACAAATTAATAGATGAA--GGGAAGTGTTTATGTGACCCGATGGCTAAGGAAAATTCATGATAGCTATAACAGCCAAGGTAGGCTTCAAAACCTTTGCTGATGAGACCGTGTGAATTCTATGTGACACTTGCGTTTAATC-ACTAATAAGCC----CATGGTTTTCTCTGTGAATTGTGTC--TCCACATAGCACCTTCTACTCTGAGCTTGTCTAGAAATAATTCTTTAATCCCGCCTCTGTAAAGCTCCTGCTTTATCTGGAACATTAAATGAAAACCTACAA-ACTT--gttaaagatatgaaaaatta-----aaacatc-ctATG

a score=20388
s chr3           157290727 828 + 160039680 TTTGACCAAGAAGGCACTAACTGGGATCAGTTA---TCTCATGGTTACCTGGCCTTATTATTCTTTTGAAATGTGGTATGGAATTATTATTCTTTCATGTCAATCAGAATTGTAAGTTTAGATAAAGACCAGTTCATGACAGACTCTTAACTAAGGACCAT-------AGTGTCTGCCTCAAGACACTATAAAATTCTCCTG-CGATTATATAATTCTTCAACCTG-AAAAAAAAAAAAAGAGAAAAAAGA---AATTACAGACGCACA-------AGTTTTTCTTTATTACCTTGAAAGTAGTTTTTCATCCCTCTTTTCAATGGGATGAGGAGCTGTTTATGTTGGTTTAGGGAGCTTATTATTATGTAAAGTACTGTTTCAACATAACACAAGAAATGAAGGTGCTGGAATTCATCACACTTAAAGTACCCTCATAAATGGATAGAAATGCTTCATAATGGGAA-AGGGGCTCGGAGCTGATGGAT-------------TCTTTCATAAAATGCAGACTTAAGTATCTTTGCAAAAGATCCATTAATTTCCCCATGCCAAATTTGAGCATGACACCCCAGGTATGAGGACTTCTGGAATATTATATTTGTACACTGCCAGCCTTTGACTAAAGACTTGGCAGGAAACACTTGTTTGTCTTCAAATCTTTCCAAATAGTTTACATGGCTTTATCTGTTAC---CGATGATCCTCATTGTGTGATATGGTTTAATAGCTGGCTGGTTAGAAGCACAGATCAGTAACCATAGTT-ACAAGAACTGGACTGAACAGCCATGTGTTGCAAGGCACACAGCCTCTGT---GAGAAAGCATCCCCAAAGGAGGACC----CTACTGACTAAGAATCTTG
s HiC_scaffold_1 144480911 825 + 233722169 TCTGGCCACCATAGTACCAAATGTGGTCAGATGCACTCTCAAGAGTGTCTAGTGACTTTCTGCCTGTAACAGCCTGTCTGAAACACTCAGGCTTCCTTGACAACCAG--TGATGAGTTTGGGTAGAGACTAGTTGACTACAGAATCT-AACCTAGGGCCATCATCACCAGTCGGTGCTCCAGGCCAGGACAAAAATATTGTGGTGCCTCAATCATTTTTCaaattgtaaagaaaagaaaaaagaaagaaaacccattcacacacacacacacacacacacttactttATTTCTCCCAAAGTAGTTCTTCACCCCTCTTTTCattgaaatgaaaagacaattaTGTTTGTTTAGAGAGCCTATTATTATACAGTGTAATTTTTCAGCACAA------------AGATGCCAGGATTCATCACATTTGAAGTATCATTATTATGTGATAGAAATACTTTACAATAGGAAGAGGTTCTAGGAGTTTGAGTATAAGCACAGTTGTATTTCTCCTAAGAAGCTGATTGAAGTAGCTCTGCAAAAG----------CTCTTGGTGCCAAGCTTAAGCATG--GCCCCAGACATCAGAACACCTGCTATTTTGTCATTGTA--------------GACTAGGGGCTCAGAAAGAGTCATTTGTGCAGCTTCAAATCTAGCCGAACGGTTTACAGAGATTTATCTGTTACATACTGAAAATCTTAATGAGCAGTGAAATTTGGAAGGTGGCTGATGTGAGCCACAGATCAGCAGCTGTAACTAACAGAAACAGGA--------CCATGTCTGGTAAGGCACACAGTCCCAAGAAAGAGCAGGCCCCTCCGGAAAGAAGCCGTGGCTACTGA-TGAGAAGCCTG

a score=35044
s chr3           157293074 3473 + 160039680 GTATCACAAAGCAGTGGTCCTTGAATGGAAGGGCTGCTTCGCCTGTCACAATGGTGTGTTCTCCATTTTAATTGCTACCATTTATCTGGCTGGAAT-GGAGTGAACTATGG----TTGGGAACAGGCTGGAAAGTTCCCAGAGTGAGGAGTAAATGGACTGAACTGACCAGAGGACCTAACAGATGGGTGATTCTCTG--GAAAGACTGT-------------GTGGAGGTTGCTGGTTCTGGGTGGT--AGCTCAAGCTGTCAACAAAGAGAAG---------TTTCACACAGCCTCTCATGAGTGAGGATTTTATCCTGCAATCTACTGAGTGTTTGAATTAAGAT-GAAATGCAATTTAGACTGAG-GTTAACGCTCAGATTGTTCC--TTTTCATCTTAATTGTACTTTTTGCAAACTAAGAAAATCTATGACAGCACATAAAGCCATGTGCTCCCAACAT----GAACCGATTTAAGTACTAAGTGTGGGTTTGTTTCTCCTTAGGAAATTGATTTTTAACTGAATTTAAATTCATTGCAAATAAATG-GATTGTATTTGTTAGTATCAGAAAGCTTAGCCCACACATTTTTTGAAAAATAAAATCCAAAATTATTCAATGAAATGATTATCTTtgttaccttgaaaaacccagaggggcctggaataaaagtcccagtaa----gggattatctaccttggcttggcttgtgagcatatctgaggaggattgaggataaattctttgatgtgagacaatccagcccactgtgggcagcaccattccctaaaagggtaatgctggactgtagcagagtgagaaaactgatacaagagcaagcaagtaggcacacatgcattttctcctgctccccattctgagtgtgatatgaccaacagcttcacattcctgtcattaggacaccccACATTTCCTTCTTGCCAGAGTTATTTTATCACAGAAACAGGATTGTGACAAAAAGCAAATCTTATTCCAACTTTTTAAGGTTTTAATATTTTTTGCTTTTCCTTGAGAGGCCTGAACTAGTACGAGTGTTAAAAGACAGAGGTCTCCAAGCTACAATTGATTGGTTAAATCCAAGACCCA-----CATGTCTCCATTTTCCATCTCTATGTGGGATTGTGAGGAGAAAATACATATATGCAGAAATCTTAGACTAGTATTTTAATACATACTTTCT--GTAAGAACCAGCTCCTGGTTGGTCTGTTCTGAATGCCAGGAGCCCCCAGCCAAGCATCCAT-CTCCTT-------ACATCTTCTCTTTACTACATTATGCCTGATACCCAGACTTC------------TTAGAGTTGATTCCCACTTACCTGA-GACAAGGCAAATGTTACAGGCTAGTGAAGATGAGCTGGGTTTTGCATATGTGTGTGTGTTTGTGAAGTGCTGGCTTGAACAGTGACAAAGCATGCATACTTATGAGACAGAGTTAGCACGGG---------------ATGTATAGGCAGCCAGTGGGAAACTTTAACCCCACAGAACAGACATGGCCCTCAGATTCTAGGACCCTTTCGGCAAAACTATGCACCAGGGCCGGCCTGCCCACTC-TTCCATCTGCAGTGAACCTGAGAGGTTCTTGCCATGTTCTGAAAGGCTATCTTGT-------------GAGTCATATTCTGGAATTGTTCATCTTGCCCTCAGCCATGGCTGTGCGTCCCAGTCCCCCCTTTGcctgagctaaagtgtgtgtgtgtgtgtgttgagtgtgtatgtatatgtgttttgcatgtgagtgtgtgtgtctgactatatgtgtatgtgttgtgtgtgtatgtatAAGCGTtatgcatatgtggtgtgtgttgaatgagtatgtgctatgcatgtgtgtgtgtgtttgtattgaatgtgtatgtagatgtcttacacatatgtggtgtgtgcgtgtgtCTCAT-----GTACAATTGCTTT-----------GTCCTGCTATCTGTAAGTCATTGTCTCTGGCAGTTC----ACACCATACCTAACTCAACGTTCTGTCTTTACTTGTTCTGTAAATGCCTGTACA---TTATCTGTCAA------------TTGCTTTAAATTCCAGAGTGCTCA---AATTAGAGTCTCACAATCTCATTTTATAGTTGGCACAATTCCTTAAAATGAAATTTATAGTATTGCTTTCTGAGTTTACCAAACAA---------GAACCTTTT--------CCTTAACTCATATTTAACTAC--ACTGGTAACATCAAAAT-------TAGAACATTTGCTC-----TCTTAAACCAGTACTCACCAGTACAAGAAACATTACATATTTGTATTACCT-AAAGCAAAGCTAGCAATTTCACGGTAGTTTAAACTA---ATTGATTAATGTATTTGATCAGTTCTTCACAGAAAAGAAAAGGAAAAATGTTTCTCTGCCTTTCTGTCAATACACAGTAGGAGGTTAGTGTTAAAAGAACACAGAAGATGAGGGTGTCTCA-TATATTAAAATCAATTAAAATATGTCAGTGCAGGTTCAAAATAGCATTAAACTGAATGGATTGCCATCAGCACCAAAAGA---CCTTGTTCAGAGCGAAGGCAGCCTGAGGACAGATACAGATCCT------------------------CCGCTGTGAGTTCCCTGGTGTAAGCTTGT-GTCTCTGGCTCCCGGTTGGTCTCCACTCTGCCAGAGACTT-------CAGAGAACACCACACATGAGCAGAGGCTCAGAAGGAGACCTGATTCTGTACATGTGCCTC-----TGCCCAGG-------------CAAGGG----------TGACATTTCGGA-TAAACTAGTACAGCAAACAC-AGGTTA------------------------------------AATGTGAGCCTGTGG------GAACAGTGGGAGCTGGGAAGTTGAGCGCAGCT-------------------CCTGGCTGGCACTTCTTTGAT-CATGGTTTTCAA-GCAGGCACTATGTTTATTGAAGTCCCACTGTCGTTCTTCATTATGAG-AGGCAATTAAACCTATGATAAGTTAAGAAGTTATGTCTTAGTTTGGTCATTTTTTGGTTTTTTTTTTTCCATCTCACATAACTG-TTGATTTGTTAGATTTTGAAAACGG----GAATTTTTCAATTACACTTCAAAAAATAACTGTTGTCATTCTGA---------------------------TCCAGTGTTTTTGTGTTAATAAACCTGGATCTGAGTTAGCAAGCTT-AAAGAGATAGCAGGCACACTGTAAGAAAATCAGATTTGCATAATTTTCTGCTTGCTTACAGAACTTTACCATTGAGAGCATATTTCACATTTGGGGAGAGCG-TTTATTAGTATGAGATGAAATGCCACCTACAGAGTAGTGCATTGTCTT-CTAATTTAACTTCTCAAAATAAATTATGAGCAGATTTGTCACGGTGACT-----AAAAAATCACTGTTATAATCGAAAACAACAATTCTAAAGAAAGCC-ATGTTT--------TCCTCTACATAGGACAATTTGGCTTTATTCCACA------CTTCCCTCTGTGGGGTTTATGTACTGTTACTTTACATGGTAGGAACACCAGGATCCAACTTTCATTCCTTCATTCCATCCCTT-TTCTATTCATGTCAG--AACATGTCGAAGGACAGCACAA-ATATAGGGATGGCCTATGCACCAAGACAGACTTGAAGTTTTGCAGGAAGAAAGGATCTTTTAGGAAtgtgtgtgtgtgtgt
s HiC_scaffold_1 144486123 3456 + 233722169 GTATCCCAAAGCAGGGATGTGAAAATGGGAGGCTCTCTCAGCCAGAACCACCGGACAGG-----GTCCTAATCACCACCATTTGTCTGGCTGCCACAGGGGTGATATATGGAAAGCCAGGCACTGGCTGGGA-GCTCCCAGGGTGAGGACACAGTGGGGTGCCCTGGC--GTGGACCTAACAGATGGGCAGGCCTCTGATGGATGACTTTCCAGACTCCACTCTCAGAGAACGCTGGCCTCCGGTGATTTGGCTCAGCCTCATAGCAAGAAGACGCGGGACCCATCCCATCCTTCCTCTCC------AGGATGCTATGCT-CCATCCACTGAACATATGAATTAAAATCAAAACGTGATTTAGACTTGGCAGCAACTTTCAGCCCCTTCTAAGCTTTGTGTTCATTGTACCATTGGTAACGTCACAAAATCTGCTGCGATACCTGGATGTGTAGATCCTTGGCTTAAAAGAATTCATTTGCATGCTGGGTAGTCTTtcgttctttttttaaaaagagcttttcCACCAAGTTTTAgtacactgaaaataaatatggCTGTGTTTGCCAGTTCCATTCAATGTggcttagg--------gaaaaaaaaaatctgaaactatCCAG----ATGACATTCTTAATCA------aagaacaacaacagc-----aaaaaatacGCAGTGATCTTGCCAGGATTTCTCCTTACTC--CTTCTGA-CTTATTT-------ATAAAAGAGAAGTCTTAAGA--------AACGCTACCCATTG---GTGACAAAGATTTCTAAA----------------------------------------------------------------GTACTTTTTCCCCCTCCTTATTA-------AAGAGAATCAAAagg---------------------------gctttttcttttctc------tgtattttcacGGCCAC-----tatg-------------cttattta-------------tttaattcgTTTGGCTTATTTCTGA-AGGTCAGCCTTAGCA-ATGTGATTAATAATGCAGATCTTACAACTACATGGGTTAAATTAAATCTGGGATCCAATGCTTTTGCATCTGGTTTTCACATCTAGGTAGCGACGTG-TAAAAACTTttacagatacaaaaatcttaGACTCGCGCTTAAACACAGTGGGCCTAGGCAAGAATTAGGTATTC-CCATTATTTTCTAATCTCCAGCATGCCTCAGTCAGGTGTTCATTCTCCTTTAGCTATGCATTTCCACAAGAGCACACTGATTCTGAGGGCCCCACTCCATCTTGCATGCATTGGGGGTCATTCTCAGTGCCTTTATAACTACAAGAGTTTTATAAATACAGGAAGATGAATT----------------TCCGTTTTTGTAAAACACTAGCTTGGAAAGCATTGTTGTACAAGTGTTATCCTGAAATATTTAGGATGGCGCTCACCACCCATGCATGCCTGGATAACGA-TGTGGAGCCTTCAGCCCACCGGCCGAG--TGACACCTTGGTGTCATG-TTAATTAGCCAGGACTAAGCCCCAGTGCTGGCATGGCCACTCATGCCTTCTGCTGTGAAAAACAAGGGGCCTGTGCATCTTTTGGAGTAGTATCCTGCAAATACAGAAACGGGGTGCTATCCAGG------CCAGCTCACTCCC--------CCATTAGTCTCAGGCTCCATTTGACCTTTCAGGAAGTGTCTTCCACTG---GCTCAGTGACACTG------------GCATGTG------------TGACAGCGtgtgt-----ttgtgagtgtgtgt-------ctgtgcttgtgccctgtgtgt---------gtgttttcagcaGGGGT-----------------ATCTACACACAGGTGCGTAGCTCATTTGTCCTGTGAGCACATCTCTCCTCGTTTGTCCTGTTACCTTTGTCGGTCAGTGTACAGCTCTTTCCATGTCTCAGTCTCACGAAATTCTAGGATACACAAATTAGCACAATGTTATCACTTTATGATTTACCAAACTGACTGACTAGAATTATTTGACAGATAATTAACTACTTGCTTTA----------tgctcataaaaatagaaaatt-tgatctcatctcattttt------atttatttttacttagtttttattttttgtttttgtgtttttgagacagagtctcactgagcatttcaggctggccttgaactcataccaatcctcctacctctgccttcCAGATGCTGAGATTACACACGTgcacctcatttttaaa-----atttac-------agaaatGTTACTCATCTCTCTTACCTGAAAACAGAGGTAGCAATGCATATATCTTTTAATCTGCAGATTTGTTGCCGTAATCAA------CTCCACAGCAAAGCTAGGGA-------TTTCCTGCCTT-CtccaaacacaaaacaagaaattAGATTTGAAAGCACACATTAGACATGTATTTCCAAATAGATTAGACTGTGTTAGGACAGGTAAACGCAAATCCACAGCAGCTAGGAGTTTAATTAATTAACCTTA-CATCAAAGGATTTCCTTCTTCAGAATAAAGGAAGAGTGAGGCCAGTGGTCTATCCTATTGGCATGGTTATTGACTCAAGATTCTTGTAACTTCCAGTTCAAAGGTTTGTCTTCTCTCCCTCTTG--TAGTGTGTGCTATGTAGGAATCTTTTGTGTCCATGGAAGATGGTCTAGGAGATTAGTCTCAGATAAATCCCCAGTATT-TACATATGCCTCATGGGTACCTAAGGCATCTCAAAATGCAGGGGAGAAGAAGACTGACATTTCTAAGTGAGCTAACAGAGTAGCCACCAAGTTATTCAGGCGATGAGTTTATGTAGTTCTAAAAAGAGAGAGTAAGAGCATATGGCTTAAGAAACAGGTGAGG--GGGAATTTCCACAGGGCTGCTGTGGCGGTGCCTGCACCCTGGCTGGCATTTCTTTGATATGTGGTTTTCAAAGCAGGTGCTATTCTTATCCCCATCACATTGTCACACTCCATTATGAGGAAGCAATTAAGCCCATAATAAGTGAAGAGGTGATGT-----------------TTGGTGGCTCTTTTTTAATCTCACACAACCGGCTGATTTGTTGGCTTTTGAAAACAGATAGGAATTTTTCAATTACACCCTGCAAAATACCTTTCCTCATTCTGAGTGTTTGAAAAGCAAATGTATCTTGGATCCAGTGCTTTTGTGTTTACAAATCTGGATATGATTTAGTAAGCTTTAAAGAGAGAGCAGGCACATAGTACGGAAATCAGATTTACATAATTTTCTGCTTGCTTACAGAACACAGCGGTTGAGATTATCTTTTACATTTCTGAAGAATGCTTTAATATGTTGAGATGAAATACCACCTATAGGACA---CTTGATCTTGCTGGTTTGacttcttaaaataaattatgagCTGATTTGTCCCAGTGACTCTTAACATAAATTGCTGTTACAAT-GTAAAGAACAGTTCTAAGGGAGACTGATATTTTTTTAACCTCATCTGCATAAAAAGATTTAGGTTATTTCCACATTTATTCTTTCCCCTGTGCAGTTTATTTGTGGTAACTTTACACGGCAGGAACAACAAACTCTATGCTTTGTTCATTCCATCCATTCTTCGCTTCATGCATGATAAGCAGCATG-----GAGCAGCAAGACATACAAAAGTGAACT--------AGGTGGACATGAGTTTTTACATATGAAATAGTGTTTTTAGGGGAATAAGTGTTTGTGT

a score=55045
s chr3           157296907 4662 + 160039680 [encoded data, 5528 characters]
s HiC_scaffold_1 144489551 5236 + 233722169 [encoded data, 5528 characters]

a score=24467
s chr3           157304403 2186 + 160039680 ATTTGTATCCTCTACGTTCAGCTGAGAAAA---CAGGTATGGAGATGGGAACTTGTTCCTAGTTTTCCCAGAGGTTAAGAATTAAAGTCTTC---CTTCTCTCATATATTCCAACAG-AATCACAGACAAGAGCAACTCTTTAATAGTTCTCTTGTGAGTGTTTGT-------------------TGAGTATTTAA------GATATGAGGACCTAATAGTCAACCAAGGAGACAGGACTCTC--------------------------CTGTTCAGTATAATGAAT-----GCTTTAG----TGGTGAC------------AGCCTT------------CCCAGCCCTGAGCTCCCGAAAGTGCTGTCTCCTCTG--TTTCTTGATCATGTAGCAAAGCCTCATGG-AAACACAGAAATTAAAACA-----TCTACTAATTTAGTTCCTTGTTACAAATGCTCAATATCACCAAGCACTTGACAGGAAGT--------------AAATTAAATGAAACCCTTGCTTTCAAGAGAAACAGCCTCTCTTCTAAAGGTGGTTTG--TCAGGGTGGGAAGG-ACTGCTCAAACCA---------GTGACAATGGGGGAGTTGGGGGCAGCAGACACCATAGAGTGTATCTCAG---GGAGGGTGCACAGAGGTAGAAACATGGAACCCTCCTACCTCCAGAGCTG----------------AACCCCCCATAGTCATGCC---TATAAAACTGAGGAGTTGTAGCAGCTGAGCTCCTTAGAGTTCTGGAACATTCTAACAATGCAAGCAAAAGGCAGTG---------GAGTAGA--ATGTTAGTTCCAAAGACAGTAATGC----AACCCAAATAAAAGCTGACTGTAATAAACATGGAGAGGTTTCCCAT---------------GAGTCTCTGGTGGAATGTG---------------GTGGAACAGACTGGGACC----AGGCTGGAGAGATAGCTTGAGAATATGTCAGATAATCACAGATTCTCCTACAAACCATTTAGACTGTATCAGGACGTTGTCAATGACCAAAAGATGCTGACAATTATTGGAAAATTGTTAGGAGAAACTAAAAGTCTGTCTTAAGCATGAAGAGGGGAAGAATGTAAATATGTCAGAACCACAGCTTGGGTTGTCATTACCTG-------GGAATTTGAAAAG----CCAAAAGTAGCACAGAAGATAAAAGATATTTTTAAAA--GGAAAATGCTATCACAACCATGTGCTATGAAGCACATGATC-------------------TGTTTCAGAACAAGACATCATGGTTTGGTTCAGGAAG----TCCTGTCACAAGAG--GCCAAGAATAAAAAATAATGAACCAGACAATATCATCATTAAGGCTCCATGTTCAGAAACACTATATAGTAACCTAAATAATTTCACAGCTACAAAAAAAAAAAAAATCCATGAGCATATTAGAGAAAGAGTCTTTAAAACTCCTTAAATGTGTCCTTTTCTTTGCCAGATTGAAATTTCTACCAACTCTTC-----------------CCATGCAAGCAATG--------AAGACACAGCT-----CAGTCACAG--GATGATCACGGGATCATCTCTGTAAAGTCTTCTTTTGCTTGT--------TTTGTTTTTCAGCAAGAGGATGACTTAAAGGCCCAAACTCAAGCCTATGTACTGAAGTACTAAAGACAATTTATATTGTACTTTGTATGTGTACAT------TTCACACGATGAAAACTGCTTTTCAGGCACATATGCGCACACTGAAAAATACGTATGGCACATTTAGAAAATGTTTGTAAGCCAACCTGAGATGCATAAGGCTGCATAACCAGACCATGCCAATTTCA--GAACCATTCAGGATTATGTAAAGCAGCCTACACTGAC-AGATACTTCACACCAGAGCTAGCATGTCCACATAAATTACTTCTGGTTTGGGGAAGAATGGAGTAAACAA--GAACTCGAGCCTAAATGGAGGATGCTGTGGAGAAATTCAAACTCTTGAGACTTTATTTCCAAAACTAGAATGGATAGAAGA--AGACAGCAGAGCTTGTCTATGTTTGGTTAA---TTGCTTTTTAAAATTCTCTTTATCCCAAATTAGAGGTAATGGTCTTGGAGAGTTTCCTGTGGCTCTGTATAGATAAAAGTATTTATCTACAAATGG--ACATATTTCTGAATGAAGGCAATAATGCAGATGAATTTGCATTTGAAACCAC-ATTGTAACTAAGGCTCTGGAGACAGAATGACATAGCAGGAACTTGGGCAGGATGG----------------GATTCAAGGACAGAGGTCTGACACA-CAATAAGTTAGCAGCTGCCACGAGCAAGTTAGGAAGACAATTCTG-TGTTCAGAAAGAGAGGAATAGAGAGGAATGG-GTGACTTTTCCATACTTTCTCCTCCCTTCAACACAACATACAA
s HiC_scaffold_1 144496901 2381 + 233722169 ACTTGTGTCTCCTTAGTTCAGCTGAGAAAAGTGAAGCGCTGAAGAGTTAAGTTGGTGGATAGTATGTCTGATCGTAAGACATCA--GTCTCCATACTTCACTAATACATCCAAATAGGAATAGCTCACAAAATGGAGTTCTTAACAgttctggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaactctATGGCATGATGCCTTCAGAAACAGCCAAGataacaaaactttcttttcgcTAAGATAGAACCAGATTTACTCTACAATGTCTTGAATTTTGAACCTTAGAAATTGGCTATTCAAGATGATTGAGTCTTGAATTTTTAGTTAATGGCATTGTCTTCCTTTGAGTGTTCTTCCCTACGCCTTCCCGAGTTTTATGCTAAAGCTTCATTGCAAATGCAGAAACTAAAACAATGCATCTA-TAATTCAGTCCTCCACAATGAATATTTGATTGTACCAACCCCTTGATCAAATGCTATGAGTGATACAGAAATAAAGTACGATCTTTGCTTTAAGGAAACTTAGATTTTA--CTAAAGGAGATGCACATGAGAGTAATAAAGTACAGACCATAGCAAATTGTTATGAGAGAAATTAGGGGCTGGTGGATGCATTCCACCTGGGATGCTAGACAGAACGGAAGGCACAGA-AGATAGTTGCACAGGGCAAACCTGAGTTCTGGTTTATGTTTGCTTCACTGAAAACCTACCAGCCTCATTTCCTCTGTAAAACTAAAGGGT----GCACCAGGACCCTTAAGAGTTCTACCAGGTTCTAACTTTCTGTGCAGGTTGCACTATTTCAACACATGCAGACCATGGAAGCCCAGAAGTCTCTGGCACTAGAAAACCAAGTGTGAAC-GAATACATCGAAACAGCAGAGATCTGGCAGTGCCCCGAGCGTGGAGAGCCTCCG-TGGAGTGTGACTCACATGCAGATTGTGGCAGAGAACAGGAGCCCTAGGGCTGGAAATGCAGTTTGGGGTT--GACAGGAGGTGTCAGCTTCTACACaaaatcattt-gaatattttaaagaacttttaatAACCAAAATATAATGGCA-CAAGTAGCAGATCATTGAGAGCAGCTGCTAAC--------GACATAATGAGGGACACAAGCTAAAGAAATTAGAGCTGTGGGGCAGG--ATAATCACCAGCCTGCGTGGCATTTGCAAAGGATTCTAAAA--AGGACAGTAGGTGGAA--TATTCCAAAAATTGAAAAAGGT------AATCAAGCTTCATAAAATTCCTGATCCTTAGTGCTGAAAGAACAGTATCACAGAGGAACTAAAAATAAGCTAGTTTAGGGTAACCTTCCTGACACAAAAGATGCGAAGAATAAAATTTAACGAACAAGACTATATGGTTGTCAAATCTCCAACTTTAGACACCCTACAGGAAAACTTAAATATATCAACACCCACATAA-----------CCACG---------TAGATAGAGGCTTAAAAACCCATACAACCTGCAAAACTGCTTGCCAGTTTGTAATTTCTCccgtttttctttctctctttttttaatccgCACTAGCAGTGTCACAGTGAAGAGACAGCTGGTGGCAATGACTATCGGTGACCTtaagaacacagctg-ggtttctatttttatttctgtgaagccTTTTTTCTTCAGCAAGCTGATGCCTTAAAGGCCAAAGCTAAAATTTATGTAGTGAAGC--------CAATTTGTATTata--ttgtatgtgtatataaatatttcacacaataaag---gctttttaaaaacatacacacacacaccaaaatatGTAAGGGCTCTT----ATCTGCCTCT---CCAAACTGGGATGGATAA----------CTGTACCACATCAAATTCAAAGAAACATTGAGATTTATACAGAATCAACAGTATGGACCACACACTTCAAAACAGAGGTAGCATATCCGTGT----TActtctgtcttacagaaa-------taatcAAAGGAAATCCAGCTCATTCAGAAGATATTAACAAGCAACTCAATCT-TTAAGATTTTAAT-----GACCATGaaggatagaaaataaaacagcagaaCTTGTCTACGTTTGGGTGGATTTCACTTTT----ATTCTCCTTTCCCCACATTAGAGGTAATGGCCTTGGAGAATTTCATCTGGCTCTTTGCAGACACAGATTTCTGAATACAAGTCGTAGCATATTTCTGAATATTGGTAATGGCAGAGACaaatatgtgtttaaaatttcTAATGAAATTGTTGCTGAGAAGACAAGCTGGTAGACCATGAACCCTAGCAAAATGGTCATTCAGCAAGCTGTGATTTGAGGATGCTGGACTGGCAGAGAAACAGGTAGGGAGTTCTGACCATCAGGCTGACAGGGAAATTCCACTGGTCAGA--------AGCAGAAAAGAGTGGTGTGATTcttctat-cattttctttgttatcacacaaaacagaa

a score=16690
s chr3           157307499 629 + 160039680 AGGTATAATCAGAACCTCTAGATATGCCTGCATCCTGGTGGTGTGAAGGGTGA-ATATTGATTAAGACAGGAGAAAGGTATTA------TTTGAACAAACTCTCTATA---------GTGAGGCCGAGTCATACTGTCCGGATGACCTACCAAATGGTACATGATTTCTCTAT--GTCTGATGTATGCTCTACTCTGGGTACCCATCAATAATTCTCCTTTACATGAGGCTTAA-TTGGGTACAAATTGTTCAATTCCCACTCAAGTGTAA-CTTCCTCAGGAATTTATAAGTTGAGGCCAGTTTTGTCTTGCGGAAGCAAAATTCGTATTACTTAAGCAATCCTACCTAAGGTTGCAAGATGAATCTTAATCATCCATTCAACCTAGTT------------GAGTAAGTTAAG---ATTGCCTAGGCAAGTAATTGATCTTGAACCAAAACTAAATATTTTGCAGTTACATTTGCTCTTTCCTGGAGC------------CAATACAAGGAGAAACTGCTGAGGCTGAAAACAGCGTAAAGCAGCCA-GCGTGACTGACAGTGACCACTGAAATCAGACTCAGCCAAACTGATTGAGAGAGATCGCTGGAATCAGATGGTATGGGATGAGCTAGAACCTAGATCATATCTT-TTGTCCACAACCAGGAGAGACCCCA
s HiC_scaffold_1 144500122 616 + 233722169 AAGTATAATCAGAGTTTC--------CCAGC-TGCTGATGGTATAGGGGCTCAGATGTTGCTTAAAA------GAAGTTTTCACAGCCTTACAAACAAGCTTCTCACACTCCAAATTGTGGAATAGGGTCACACAGTCAATGGCATCTAATCAATAGCACATAATTTTTTCAGTAGTTTAATGTGTTCTCTATTCTGGGTGCATATTAATCACTGACCTTTGCATGCCACTTAAGTTGGGTACAAATCATTCATTTCCCTGTAAGGTATAAACTTTCTCAGGAAAATGTAAGTT----------TTCTCTTGTGGAAGCAGAATTAATGTAGCTTAAGTAA--CTACCTAAGACGGTGATAGGAATCTGAAAAATG-ACTCAGAGTAGTTTAGTTAAAGCTTGAGTAATTTAAGGAAATTGCCTAGGCGAGTAATTGGTATTGTACCAAAACTAAATATTTCACAGTTACATTTGCTCttgcctaaaaataaaaactagagcaATACAAGGGAAAACTGCCAAGACTGAAAATAATATACAGCAGCTGTAAGTAATTGGGAGTGATAATCATAATTAGAC-------------------AAGAT---------------GTAAGATATGTGTTAAAACGCAGATTGGATCTTCCTGTTGACAAATGGGAGAAATCCCA

a score=194624
s chr3           157311590 5367 + 160039680 [encoded data, 5884 characters]
s HiC_scaffold_1 144502255 5760 + 233722169 [encoded data, 5884 characters]

a score=31587
s chr3           157320491 1533 + 160039680 aacaGTCAAATTAAATGAATTAACAATATTT-GAGCTTTGATAATATAATCTCTCAGTAACTGACAACCCAAAATCTAGGTTATTCACATATCTGATATTCTAGAGTCTCTCTATTCTAACAACTTTAGCCTGTGTATCTCACAAACCATCACTCAATAGTCTGGGGCATATGGAAAAAAGTTTAAAA-ACTCTGCAAGGA---CTACATTACTTCATGGGCCTGCTATGTTAAAAAAAAAAGTACATGCATTTGGGGGTGTTTGTTAAAAAACTTAAGAAGAAAACCTTTGGATTGTGCTCTGGGAACATTTACTAT-TAGTGAAGTAGCTATTTGACAACAACAAGAAACATGAACAGATAAGAAGAC--------TTCTTCACTCACATTCTGGTACAATGATGTAGAAGGT-CGAGCCTCTGTTGCAGAAGCTGCCTGGC-TGCTT--AGACTGGGAGCCCAGGTATTCTC-------TGTTGGT------GAAACCA---GAGCCACAG-GATGTATGAGGTCCACCAGATCCT---------------------TTCTCCCTTCCTTTCAAATAGGTTACCAACAGCATTAGGGAGTTACTTGGTGAAACTGGGAATTTTGGAGCTTCCTTA---ATTTTGACCTTTTTAACACTCAGGATGTAAACTTCACACTAAC-CAAGGCTGGTTCAAGCTTCCTGCAGCTCAGAATTGTGTTTAAACAAGCACTGCAAGCCTGGGGGAATTCCTAAGAGTGTGG-GGATTTAGCTTAGCAAAGGGTTTTAGAAAATAATCCTGGAAGACTGCATCAGGATAACAATAGAGAACAAAGGCTCCCTGATTGCTCTAAAACCCTTAACAGGG-CCATAGAATGAACTGCCTGTGTAGCTTTCTAAGTAGCTTCACTGATGTAGACAATGGTTGCCTGGAAACCCCACATCTCCCTGCAACACAGTTTGACTAGTGACCTGGCAAAAACAAGGTCAATAGCTCATTTTTCACAGAATCCTTATGAAATGGTTGGTGGAGACTTGAAACTGTTTCACACTGTTGTCCTTT---ACAAAACAAACTC-----CACATACACCAAGTCCCACTGCAGTCCACGGTCTGGAAGACAAGCTTACAAGCTGGGCATGTGATATTCTGGGTAATTTCAAATGAATAAATACGAGA--------------------------------------------AATTGCACCCATGTAAACCCACCATTTCTATTTCTTTCTCCTTTGCTCAGATTTTAGCATGAGGAACATCTTGTGACTTAATTAATCAGAAGGCAGCACCTGCTCTCTGTGCTGACATGGAGAA-AATAGACTTTT-------TTTGGAATTAAATTTGTTTCTGGAAATACATAGTTCCTGTTGGTAGACAACAGGCTCATG-TTTGGGACATCTT-CAGTCAAAT-CTTCAGAATGTTGAC-------AAGAAGGAAGCCAGTTTTGTGTTTCCATTACATTTTGAGTGAGCACACCCCCCCCTTTTTTTTTTTCCTATTTTCTTCTTTTATTTTCTGGAATTGTATATATCTACATTACAATGAGGCAGTGTGTGTCCTCAGACATTCTTGTTTTC-TCACAATTCTGTTCTTGCAACGTGGTAACAAAGCTT
s HiC_scaffold_1 144510025 1587 + 233722169 aacagttaaAT--AACAAATTGCTAGTATTTTGATCTTTGGCAATATAATCtctatttaaatgat--ttaaaaattc---ttatacaT---TTTTATGTTCTATATTCTTTATATTCTACTTACTTTCTCCCTT--ATTTCAAAAACCATCACTGCATATTCTGGAACCCATAGAAAGACGAGTAAAAGACGGTATAATGAGAGCCAGCTTGATTTAAGGATCTACCCTActgaaaaa-----ttaatgtattttagaa-ACCTGTTAAACAACCCTATGAGACactttgtgg-tggtggt--gggagcaTTTAATTCATGGTGTGACAGAGATTTCACctcaataagaaaaaagtagtaACAATGAGATATTGCTATTTTATCAGCCAACTCCAATGGAAATGATAGGAACACTGCAAGAAGCTATAGCA-AGGCCGAATGGCCTGCTTCCAGTTAAGGAGCCCA---ATCCTAGCACAAGTTTTGGTTTCCCAGAAAGTATTGGAATCCCAGTGGTTCGTTAGGCTTTCcaagttttaaaacataaaggTGGGTGGGTTTCTTCCTCCATTTCAAGTACACTGCTAAAAGTGCTGGGATGTTCCTTGTTGGAAATTTGAATTTGCtactttcttcattcattttgccCTTTTGGAATTcaataatgttaatttaataCCAAAGCACAGCACACTTATACCTC-TGCAGATCTGAATTGTGCTTAA-----TACTCCAAGCACATGGAACCTCTTGAGAAAATTTTGGATGTATTCTAGCAGAAAGGCATGCGGAATAGTCCCTGAAGACTGCAATAAGCTAACAATAAAGAACGAAGATTTCTTGATTGTTCTGAAACACCTAGTAGGGTTCATAAAAT------TTTACATGG-TTTCTAAGTAGTTGCACAAGTGTGAATTATGCCTGTCTGTAAACTGGAAATCT--TTACTTCTCA-TTTGACAAGTGACCTGGT-AAAATGTAGTCAACAGCTCATTTTTTACTTACTCCTTAAGAAATCGTTAACAAAGAGTTGAAACTGCTTCAAGTGGATGTCTTTTGAAACAAAACACATActtaaacacaaacacaaaaacacattGCTATCAGTGATCTGCAGAATAAGCTTGCAAGCTGTTCCTGAG---TTCTGGATAacttcaaaaaaaagagagagagagagagagagagagagagagagagagagagagagagagagagaagaatgaCAACAGTG-AACCCAACAATTTCTGTTTAAgtttcatttgttaaaattttagcATAAGGAACATCTTGTGAATTAATTAATTGGAAAATGGCACCTGCTTTAAATGCTGAAATGGAGAagagtagatttttttaaaagtttggaaTAAAATTTGTTTCCAGAAATACATC-TTCCTGTTGGTAGAcaactattttatgttttgaaaaatctTACTGCCTAATACCTTTAAATGTTGACAGAGACAAAGAgtgggatttgttttgttttgttttta-atttgaaataagc--------------TCTCTTTTTCTAAAACCTGCTTTTCC------AATTTATAGACAGGCAAATT---------TAGTATGTGT--TCAGAAATTCTTGTTTCCATAGCAGTTTCGTTTCTGCAATGTATTAGCAAAGTCT

a score=28156
s chr3           157330324 593 + 160039680 TCTACTTTATTTTACCTTCATTATACATTTTATTTTCACTAGTTACCACAGACTTTTTGGTTTTAAATACATAATTCTGTCAGC-CAGAACATTTGCAATAAGCATTTTT-----CACCTTGATTATGGCATGGAAAGTCTTTAGAGAATTACACAGAGACTCTACTATTCATT----TTTAAATTCATCTTTCCAAACTAATGGTTCCTATTAATTAGACAACAAAAAGTGAGAACAGAAAAAAAATAGAAAGTACGATGTTTTTCATCTGAAGGTGAACTACTGGAAAAGATGTTAAACAGTTGGGCCAGATTTTAATGACTT-TGCGATGGGTCTTAATTAGGGTTGACATGTGAACTGAATAGCCTGGCAGTTCCCTACACATG--AAGGTTCTTTTAAAAACTAATACCTAGAGTTATTCTATATAATTAGTCCTCCAAATGAAAGGGTGCAAATGGAATGTTGCTGGTGCCAGGAGGAT----GTATTAATCTACATTCTACATGTCATGTTGCC------ACCATCTGCCAAGT------CACTTCACTGATGCTGATGCCAGGGTATCTGACAGACAGCAGGTACGAGGTAGATACATCTGCTTTATGCTATTG
s HiC_scaffold_1 144521410 616 + 233722169 TCCATTTAATTTTGTCCtcattatgcattttattttcactggTTACCACAGACTTTATGATTCTAAATATATAATTCTGTCAGCTCAGGACATTTGCAATCAGCATTTTTTTCTTCACCTTGATTATGGCATAGACAATCTTTAGAGAATTATACAAAGCCTATACTATTCATTGCACTTGTAATTCATCCCTCCAAATTACCGGTTTCTAttaattaaacaacaaaaactga--ATAGGGGAAAAATGGGAGGTACGGTGTTTTTCATCTAAAGGTGCACTGCTGGAGGAGATGTTAAACAGTTGGGCCAGGTTTTAATGAATTCTGAGACAGGTCTTAATTAGGGTTGACATAGGAACTGAATAGTTCTACAGTACCCTATATATGacaggtttctttttaaaattaa-acctaGAATTATTATATGAAATTAGTGTTATAAATGAAAAGATATGAGTGGCACATTTTTGGTGCCAGGATAATACTAACAGCACCCTGGTTTCTAGCAGGCATCAGGCTGAGGAGACCATTTGTTAAATGGTCCCTGTTTCACAAATACCACTGCGTGGGTA--TAATCAGTAACAGGTACAGAACA-ATGTGGTCGTTTGATTCTGTTG

a score=38470
s chr3           157335880 1133 + 160039680 ACTTTAGACCTCTGTAACTATTTTTTTTGAAAAGAAAAAGAAAAGAAAAACCTGCATTATTTACACCAT-------GCCACCTGCAGCAGT--CAGTGTGAAAC--AGCCAGTATCAGCAACCACATAAGGTCTGATACTCAAATTTACCTCCAATTCTGCTCCACATATATTACCTACAGAACCAAAGAGAGCACAGGTGGGAGAAGGGGAGGAGCGAGGAATGTACAAGTCTTCACATTCAGGGATATTTAATGATGCCCTC-TTAAGTATATTTTTGTTTCTTCCTTCTACTTCTTGAATCCTAAGTAATATGTGATCTTAAGGGAAAACTTTAAAGCTAAATAAACAGACTTTTAAAAATTAAAGTTAATGAATGCTTCCTTTGGATTAACTAGCTACACAAATAGAGAACAGGGCGTGGACTGCTGTGCGCTCCCCCAGGATGCCATGAAAGAAGAAAGGGCTTACTGCTGCTTCCGTTAGGATGAGATATGATTCGGCTTATCTCCGCTTATTCAGTTTGTAATACTTAAGAACCTAGACACAATTGTGTCTGAGTAATAACTTGACGAGCTACCTGGAAACTCTATAATGGGAAACTCTGATAAATTAAACCAATATCTATTGGAATTAGAGTTTAGGAAAAATG-TCCCATGTGATAATTGCAAAACAAGCTGTTGCTAGCAGTAAAGTGCCCTGGTTCCGTTGTGA-GGTGATTTAGCAGTCCTGTTGAAATCATTTCATTGCTATAAAATGTAATTGCATTTTTAACCCAATACGAACCT-TTTCACAAATGAAAGAG-TAAATACAGAATGCT-GTTTTCCTCCATTGTCTCCAGTCAAGGGATGAGACAATTAGTAATTGTACATCGTCTGATTAAGAAGCCATCACATTTTTCACAGTAATGTAGCAAA-CTCAGTTGATATCA------------GGTAC-------------------------TTTGTTTAATAAGAACATAATGTCTAAAATAAAAATGATGTTTGCACAGACTGCATAGTTTAGATTTCATGAGAAAACTTTTGA-----------AAGAAATTAGAACA--ATTTTTGTATGTGCCATATTTCAAAACAGTACCATTAGCTGAATGGCATCTGTAAAAATTCAAGACTAAATTATCATTCCAGCAAATCACAATCATCTTTTAAAAGTAACa
s HiC_scaffold_1 144531806 1149 + 233722169 ATTTTAGCCCTGTGAAACTCTGAAattcagaactgtaagaaaaaaaaattactgc----tttGAGCCATATCTGAGGTCATTTGATGCAGTAGCAATGAGAAACTAATCCAGGGTC--CAATTCCAtcctatctccttccc---tttctctcctatg----tgtgtataaataaacta-agaaacaaaga------aggagagagaaaaagagaaactatgaGT-TGTGGGTTTCCACAGTTAGGAATAC------ATGCCTTTGCTAAGTAAATTCCTATGGCAACTTTTCTGTTCTTGTCTGCCAAATAACGTGCATTCTAaaag-----------------------agaactttaaaaattaaaagtaatgaaTGCTTCTTTTGGATTAATTAACCATAGCAATGGAGAGCAGAGTATAATCAGTTTGGGACTCCCCTGGgattctcttaaaggaaaaaaacattgcTGTCATTTTTACTAGAAtgagatataattttatttctgtctgcTCATTCAGTTTTTAATACATAAGAACTCAGACACCATTGTGTTTGAATAATAACTGAATGCCCTACCTGAAAACACTATAATGGGAAATTCTGATAAATTAAACCAATATCTACTGGAATTAGAGTTTTGGAAAAATGCTCCCATGTGATAATTACAAAACAAGCTGTTGCTAGCAGTAAACTTTACTTGTTATATTGTGAGGGCAATTTAGCCGTCCTGTTGAAATAATTTCACAGATATGAAATGTAATTGCATTTTTAACCCAATAGGAACCTCTTTggcaaatgaaaaaattaaattcagaatgCTCGCTTTGTTCCTTTGTTTCTAGCCACAGGACTAGCCAATTAAAAACAGTGCATTGTCTGATAAAGAAGCCATCTTATTTCTGAAATGAATGTGCTAAATTTCAGTTAACAAAGCTGCCTTGAAACAGTACTAATATTTTGATTCTGTATGGCAAGTTTGTTTAGTAAGAATATGatgtataaaataaaactgaagtccACGTGACTTGCATAGTACACacttcataaaaaatattttcaaaataagagcTAAAGAAATAGTATAGCACTTTTGTGCATGCTGTATT--AACATAATCCAGTTAACTCATTAGCATTTGTGAAACACCATCACTGGATTATCAttcaataattttataatcacttttttaaaaaaata

a score=45186
s chr3           157340799 3274 + 160039680 tgtggacatcaacaaccatagaaatga---caGACCCCAATACTATCTCAGCAGAGACAAAAGTGCTCTTTCAACAGAACCTAATATATTCTTTGACCAGAT----TGAGGCCTTCTC-TGGTGCTGACACCAGATTTTATCATCCTTCTCACATGCACATAGCAAAGGGAAGCAAACACTGCATTTAATCC---------AATTTGTTGATGAAGCAAATGCA------TGAGC-------TGCAGA----GCCAAACATAAGACAACAGAAAAATTTTTACAGATTCTTTTC---------------------TGCTTTCAGCTTAGCACAGTTACTGTTCCACCAGAAAACAACCCCACTTAACAGCAACATCAGATAACTGAGCTACAAATCGGTGAAGAATGGTAGGATGTGGCTCCTCACCACATGAGGCTGTTCCAGGCTGTA-GGTATGACATCATCATTTCCACACAGCTTTCCCCACAGTCATTAT-------------GATGACATCATAGCCATGGCTTATGATGTGATCACTATTTC--TCATCATAGCATTTCAATAGGGCTCAGCTGGTAGA-AAAATATCTAATGGAT------------------TGTGTACTCTCAGCAATCTGCCTG-------------------------------------TTTTGTTTTGTTTTGA------AAAGTAAGATA------------------TACAGCATTTC-------TACCAAAAAAAAA---------------------AGTGTTA-ATTGGAATTATTTGAGCCAGTTTCAGCCTTGACCATTCTCTGTATGCCCAATTAGGAAAGGAGAGGAAAGTGATGCTTTTCCAATAGTATCAGGTTCTGGAAACTTCTTCCCTTGATCTTCACCACAACCCTGCAAAGGTGAT-----GTCAGAGACATGAAACCTCAACAATGAGTATGGAAAATAGGGTTGCCCCCTCCCTGAGCAGGACTCACAAT-TATGCTCTGCACTTCCAGTC--ATCACTCTGTGGTAAATTCTACCCAAAATTAACTAGGCAGAGATGATGAACT---ATACTTGATAACTCACATTTTTACCATAGCAACAGCTTGCATAAAGCCAGCCAGCTAGGGTTCAGTGTAGACAACCCTG---------ACACTTCCATCAGACTATGAATAGAAGGTTCTAGAATAG-----------TCAATGTTTGGCATTAGATTagttcttctcaaactgtctgtagtgaagaactttctctttctgtctctctatc----------tctctctc--------------------tctctctctctctcccaatattctttttggaatggggttaaaaataactcattacaaaatgaaatgaaaatgcaaagcaagatatacagaagacaagctcaattact-taattattCAAATATTTAATT--ACAAAAG-----TATTCAAAATTTTTTCTAGTGACAAAAAAACCTAGTGATCATGTTTAGATGTTGTCACAGTCCATGTGCTGTGACTTCTCACACTTGACCTCTGTCTTCATCGTATTA-AGAATGAGGACAAGTACTTCTCAGGTCGGC-TGAGGTTCAGAGGCCACACTGAGCTTGCCAAGGATAAAGACCTTTACAGGccactgccatcaccaccatcactaccactaccaccaGCAGCTGACATACACCTGTGCACTCTGCTGCCTAAGCCCCTCTCCAGCAATGCCCAGGCTCATGACCACTCCTTATCCATCCTGAGCTGTATTGCTTGAAAGTACTGGAAACCTCCTGATTTTCAGAACCACTGATACTTGTAAGTGAAAGGGGAC--------GTTTCTGAGATTCTACTCTAACACAGCCTACACCCTACTACAGGGAGCCAAGGCTTCCTCGTTCCT-ACCCTCCTTCCT-TCCCAGTTTCTTAAGTTGTTTTTTAGAAAAGAGTTTCTTTGGTTGATTGGAGCAATGGACAGTCTGCTGCCAGTGGTTTAAATTTCTAAATGAA-CCATTATGTGATTCTTTGTCTTAAAATTAAGTTTTGGAAGCCAAGA-GCTTTGAATGTGGACTATACTCTTGTTATT-TGGAGCTGACTTCTGGAAAACAATTCAGAATTTCTTGCCAACACACACTCTCAG-CTCCACTCT--TCG-AAGCTGCCACTGTGTGTTCTGTGTGTAATTTTCATTTAGCA--TTTAAGAAAAACTAACACAATGGAAATATGATGTAATAAATGCCACATAAATACCATGTAATTATAACATTACATATTCATACATATAATTTTAA-ACCCATGGTCCTCTTTTATAAACCTGACTTAGAATTGACATAAAACTTGCATTTGCATGAAAATGCCTTCATAACTGTAGTAAGATTTTCACTGTTGTGCGCAAGAACGAGAAGAC--AAAATAAATAGCAGTGAGCGCGCAGGCTGTTCTTTCCTCTTTCAGGAGCATTGCTGGGAGGGGTGAATATGTGGCACTTAG-AGTGGCATGCTTTCCTCTTTTTTGTATCTCTAGATATACAGGTAAATATATCAACAAGTGaaattaaaatgtaaattcttagaatttaaattaaatttaaatGTTACCATTTTCTGAGCAC------CATGGCATACTCTAGATCTCCACACCCCCACC--CCAAA--CTCCAAAGCAAACTTTTAT--TGTTTGAAATTAGATTGGAGAAAACTAA------------------GCCATTTCACTTTGCAATAATGACCAT------------------------------------CAGCTCATAACATGAACTAAGAGCGTTAGG-----GGTTCTTTTTCACTTTTCATTATCATTACTA--AAAAAGTGGTCACTAATAAAACCATGTGCTGTAAACTGGTATTGATACAAGTTACATTTTGATGTTTCAATTATAATGTTAATTTTCATGAGTTCCATTGTGAAAATCAAGTTTGGATTGAGCACCCTAAATAGATTGATTGATTAATTACCACATCAAGACAATAAAAACATTCATTTTGCAGAATTCTCACAGATGTCCAGGGGAGACTGGTCTTGAATTAGCAGTAGGTTTTTCTTATTTTTTTTTTTTAAGAACAAAAACTAAAAACTGCTTGGAGTCTTAGCTAATGAGATAATCACAAGCATTTCATCATTTGTAAACGAAGTAGCGTTTTCACGTTCCTTGTCATTAGCAGAATGACTTTTTAATGGATATTGCAATAGCTTATATCAGATAACCAGACTGAGATTCAGTCTTTCCTGCCAAGTACAAAATTAAACAGCATGCTACCATCTTATGGAAATAGCTGCTGCACTTCCTTAAAGAGCAGAGAAGGAAAGTTATCA-TTTTTCCCACAGATACATTTAATGTAACAAAT-TCCTTTTCTTGTTACTGTGACCCACACAACATTTTCCC---AAGTCACACTACAGAACCA-GTAGGTTTGTACTTTATTCAGTACAAAATTTTATTTCTTCCAAAA----ATGATATTCACTTAAGCAGAAACATGGAATTATCACGAGAATTTTTAAAGAAAGACTTATGAGGTAGGTAATAACTT
s HiC_scaffold_1 144536109 3313 + 233722169 TGTGGTCATTACCCACCGTAATGATAATTTCAGA----AACAGTGTCTTAGCAGAAAGAAACGTTCT-TTTCAAATGGGCCTAATTTATTACTTGACTGGATGTAACAATGTAATCACGTACTAATGGCACAGGGTTTAAAAACCCTTCT-ACATgcaaataaagaatgaaagcaaacaTTGCATTTAATCCTTAAACCAAACACTACTGCTAGTCCAAACATAAAGATTTGGGCAAAGGAATGCAGAAAGAGACACACAGAGCACACTAAGTACATTTttataggttttctttctttttctttctttctttctttgctatcAGCTTAGATCAGTTACTGTTCAATTCAAAAACAACCCC--TCAACAATAACACTAGATAATTGAGTTATAAATAGATACAAAACAGTAGGAAGCAGTACATCACCATATGTGGCTTTTTCAAAGTGCACAGGACGACTTCATTATTAGCATACAGTTTGCACCATGGTCATTATAAACGCTGTCGGTGATTAGGATACAATAATGGCTTGTGATATTATCCCTTTGTCCATTGGCACTGCTTTCCAGTGGGGCTCACCGGGTAGAGAAAAAATCTAATGGATCTGTGTCTTTCCTATGGCTGTGTGTCCACAGCAATCTGCCTGCAAACATttttacagggaaaaaaaaatgtagaaatccttttttttaatttagagaaaaaaaagcaaaacagaaaaagggtaaaaataatacagaatttcaaaaaaataacactaagaaatcactagttgataaatttcatagtgttatcttagaagtagttgttcaagttaca------------------aaatcaaagtataaaaggtggacaa-----------tcaaacaatgacag----cacaaactattctgtttgata---aacaaaaacttagtagtgtggttatctatcttacacacttaaacatacatgcagttatatcctttagagtactttcctcCC-----ATtatttacaatatctgttatgcattttggatcttattactctttccaGAAGTCCTTTCAAAA-----------GAGG-GATCAATTTACATCCCTGAAAACTGG-------ATCA-------AGATTACTTGAA-----CCAGTTTCAGACATGCATTTAAAAGCCTTTACCTTTATATACTGTattcagaaagaaaagggaagggaaaggaggggaaggatTTTCTCCATTGTTTGGCATCCACTTGGTG----TCAAATACTCTGCAAAAATCCACTCCCTTGACCTGCAGACCAACCAGGGAAAAATTATCTTTGGTGGAGAAATATTTAGATGGTCTGAATTTCTAACTCAATGTACAtattaaaacacaat--aaaataagttactacaaag-gaaatgaaa-tataaagcAGGAAATGTAGAA---AAATTCTACCGTTGTGGTTCTTTTAAT--CTGATTGGATGGAAGGCCGCTGATCACA--------CATTGAGAAA------TAGCAGCGATGTCAAAGTGCTATCACGGTT-------TCTAAGGGCTCACACCCGACGCCACCTCTCAGGTTCCTACAGACTGGTGAGAAGGGGTTCTCAGACCAGCATGCGACCCCCGGACCAGG--GAACTCGGTGGAG-----------CACCTGTCACTCTTGTCTCTAGCGTCTGGACAACT--CTCTGGCAGAGGATGCAT-----------------------------TTCAGATATCCTCTGGCTGTGGGCCA----TTATGCCT---------------TGGAAACTGCTGGCAAGTTACTAATCTATGCAAACGCTGCTGATGGAAAATAAACCGGAACATTGACAGGTCTCTAGGACTTCACAGCATCACAGCAGAAGTGTTAGGGTGGACAGTACAGCCGTCTCTGTTTCTCATGCTCTTCTCTGCCCCAGCTTACAAAACCGTCCTCAGGACAAAA----------CTGCTTGGGTCA--------TTTACCCCctacattttttaatgttaaatgagGTCATTATG--ATTCTTGACCTTAAAATTAACCTCTGGATatcaagactttttaaaaactggctgTCCTCTTGGTACTCTGCACTTGTGATTTGGAAAGTAAGGTAGA-TTTCTTGTCACTACACACAAGCAAACCCCATTCTGGTCATAAACTACCAATGTTTATTTGGTGAACGATTTTCTACacgcactttttaaaaagtataacatAATAGAAATTTGATATGAC----------TAAATAGCACTCAATTAAAACATTACATAC--------ACAGTTTTAATATTCATGATCTTTCTTCAGAATCCTGATTGCCAATtgacataaaaaatatatttgtatgcaAGTGCCTTCATAATCATGGTATTATTTTCACCAATATGTGGAACACTTAGaaggacaaaaatgaaaagcagtcaACTTGTAGGGAATGTTTCT---TTACAGGAGCATTGTCAGAGCTGATAATTATGCTGCTTGAAACAGTAATATGCTT-----------GTGTTTCTAAGTATGTAGGAGGTTGTATCAATATATTAAAGTGAAATGtaaatt-tcagaatttaaatGAAGTTTCATTTGTCCAATTTCACTGGCACATGTTTCAT----TATTCAAGATAATCAGATTTTCATCTTCCAAAGGCTCAATATCAAATATCAATAAGATTTAAGAACAGACAGAGGAAAACAGAAGGGTATAAAATGATATTGCTATTTCAGTTTGCAATAATGTACATGaccaaatataaaataacaaaattagaaataaattgaaactcccaatagaaaataacaatgtaagactctagttttttttttttttcttgttgtggtTTTTACTGAAGAGCAATCACTAGTGAAAA-GTCTGCCA-GAATTGGTATTGatgcaaattatattttgatatttaaatttca---ttatttttcattcattt--------------aatttatatTCAGCATCTCAAATAGACTAATT-----ATGACCACAT--AGAGTATAAAAGCTCTCATTCTGCAGAATTTCCACTGGTATCTAGGAGAG--TGATCTTAAATTAGtggcagattttt---------------taaaaaaaataccca--------------------cTATTGTAATA-------GTATTTCATCATTTGCAAAAGAAGAAACATCTACACATTTGTTACCATTAGCAGAATGACTTTTTAATGGATATTGTAATAGCATATATCAGATAATCAGACTGAGATTCAGTCTATCCTGCcaaatacaaaattaaacaaCATGCTTATGTCCTACCAAAA----GGTTGATTCCACTTAAAGAGCTGAAGAAGAAAAGCATTGTTTTTTCCCAACGATGTGTTTAG-GGAACAGATAGCCGTGTCAGATTGCTATGAGCCCCCCAGATTTTTCTCCTTAACTTATATCAAAAAATGATATAGGTTAG-ATTTCTCCCATTACAAAGTTTCATTTCT--CAAAAGGTCAAGGTATTTacccaaagaaaaatatgagagtGCCATTCAAAAGttcaaaaa-----taatgaagcaaatGTAAATTT

a score=13986
s chr3           157348645 699 + 160039680 TCTTTTGGTACCCAGGTTTTGAAGTAGCATATAGATAATTAACATAAGCATTTATAC-----TCTCCAGAACTA---TTCAAACCAAATAGTTTGAATCTATTATGTCACTTA--ACAAACCAAAGTCAAAGAACTGGTCAGCTACAACTTTTCAAAGACATGTAAAGACCTGGTTACCTGAAA---AATTCTGCTGTTCAAGAACCCCCCACCCACCCATACAAACACAATCAGAAAATCAAAATAGAGAAAACTGCTAAGAAACGAACAACAGA-TACAAACGTAATCAATCTTATCCATGAACAGGATAAAAATATCTATGTG-----------------GGGTATCCCAAGAAA-TAGAGACATGTTTTAAAACTCTC----TAAGAGTTCTTTTGTAATAATAAAACACCAAAGAATCTTGTTCCAAATAATAGAAATACTAATTATAATTTACACAGTCTCTTCACTGCTCTAAAGGACCTCAGTGTTCAATGAGTAGAAACCTAAATGCACATAGCGTTTGCTTTTGTATATTTCAAATGTGTGGCCTTCACATGACATGAGCTTAC-----------ACTACAGCACTGGCAGTGCTGTTCCAGGAA--CATTCAGTAGTGAAATGTGCGCACAGCTAAATGTTCCACACC-CAAGGCAAAGCCAACCCTGCACTTCAGGACTCCTCCAGCATTTGAGAAATGATTCAATACAATCACAGTGTCTAAGAGCAGAAGTTTTT
s HiC_scaffold_1 144549885 712 + 233722169 TCTTTAAGTAGCTGG---CTGAGATGAAGTAAATACATTTAATGCAAGCAATCATACGGACctttaaagaaacacattttaaagtacGTAGTTTGAAATTATTGT-CCATTTACAAGAAGTGAAATTGAAAGAATTGATCAGCCACAACCTTTCAAGTTT----------CTGGTTATCAAGAAGGAAGTTGTAgtgt------atttctca------------aaagaaaacacaaagcaaaaacaatgtgGATTAACAAAAGTTCGGGAGAAGACTGTGGTAGCCACCAGT--TACTCATGCctatgttgaaaatatttaattgacATCTTTTTCTTCCATGAGTATTCTAAGAAAATAGAggcatattttaaagttattaataGAAGATTTATTTTG-AACAGCAGGATGCTACATAACGTTGGTCCAAGTACTAGAAGTATCTACTGTAATTTATATGATTTCTTCACCCTTTGTGTGGATTTCAGCACACTCTGAGTAGAACCCTAAATACACACAACATTTGCTTTTGTACATTTAAAGCGTCTGACCTTTACACCACATGAGTTTACAATTTAATTATACGATGGTACTAGCAAGACTACAAAATGAAACTGCTCAgtaataaaatatacatgcaatATAATGTTGCACACTGTGAAATATGACCAATATTACACAGTATGACTCCACAAGCA-TTGAGAAATCATTCAACAGAATTAGAGC-TTTAAGAACAGAAAATGTT

a score=31478
s chr3           157351634 1405 + 160039680 TGCAGAGATAACCCTTATTCAAATAATCAGTAACAAAACAAAAA---------TAGATTTAAGTCAGAGTAAACTGAAAGAAAAAAAAAAAGATGTGAGAATAT-AAAATGGC---TTGCAATAAACAAATGGTCCAAAACTTCTGAGATATTTGAGT----GATGGAAGATGTTTAATCAGAATGC--CCCAGAGATCTAGGGTAACAGAATCCTTGGGCAGTATATCATCtctcacatagcccaggttggccctcatttcactatgtagctagtctttggtagtccttaaactgatcctcctgtctctactctcaagggctgacattagggcatgacccaccatgctttgttttCTTTTTCCCTTTTTTTCTTGAtttttgtttgtttggtcaacatataattttacatatttacgatgtataatatgacattt-----cagtggacattcacggtgagaaattatcatgtcagggtg-tta-gcataatccttcttaaatgatgtatggtacatttatagagaa-acattgaaagtcttctcttctaacatgt-ttaataaattgtatctgcaaacatcattcctaacCCCCAGAGGCA--TTGTGAAGAACCGCAGAACATTTTTCTTTCATGGACTGTCTCCTCTAGAAGAAAAGAGAAAAAATAAAAACT-GCTAATGCAAAGCTTATCTAGGCACAGTCCTTGGAGATGGGCTTCAGGCATATTTACATTTTGGGAG-ACTGGGTGGTATTGATTGGTGGGCAGTAGCTCAGCTGGAAATCTCTTCTTCATAAAACTTTCCTTCTTTATCTTAATAATTGTCAGGGGGAAAA--TGACATGACTTCAGATCTTGAACAAGCCATCCATTTAAAAACAAACTGCACTCCTGCAAGGCACAAAAGAGGTCAAATGGATAGCACTGAAGTCAGGCTGCCACCTCCCTCCACTGCTTGAATATTTAGGCCATTATTTTTAATTGCATCTCTAGATACAAAGAGGGTCAACATGCCATGTTTTCAAAGTGGTGCTTAACACTTGAAAGGATGTAATGAGTGAACCATGTTCAATTTATAAGATCCAAACACAAAGCAACATACAGCTTTTTATAAACAT-GTATTTTCAGCAGCAAATAATGTGGCACCAGTAAGACATTGCTGATCTCCAAATC---------CAATGGCTACTATGAG---CATATAAGTAGACTTTACTG-----TATTTTCAGATTATTT------------ATAGAAGTGTGTAAAAGTATGC------TTTAGATTAAAAAT---------------TACTAAA-TTTATATGAGAAACATGTTTTGTTGCA------------------------TTTTATGACATATGTATGTATAAGGT--AAAATAACTTAGAAACATTTTTTCTACATCCTGAAA-GTATTGCTCATGTTT----AAATTCAATATTCAAC--ATTTGTTAATAAAAATGCTGCTT--TTATAAAGTA--ATATTTTTAAAAGTA
s HiC_scaffold_1 144566792 1387 + 233722169 TGTAGAGCTAACTCTTTCTgaaataatcagaaaagaaacaaacaactctttttcaaattaaaaacatgG-GAACTGTAAGATgcaaaaaataacatgaaaatattaaCACGGCCATTTAAAATGGATGA-TGAGCAAAAGCAT---ACATACATAAGCTGAGAAGAGAGGATGTTCAGTGAGAATGCTTCCCAGGATTAGAGGTTTACAGAATGTTTAAATagcctattttttttc---------------------------------------------------------cttctcttcctttccttcccttc------------------------------------ttttcttttccttctctttt----atcttt-----tttgattgACATCTAATTGTACATCCA------GCAGAATATGACATTTGGATTCATAATACAT---CGGTGATAAA----CAAATTAAGGTAATTATGTGTActtcattttaaact-tttctcatttctttatggtaaatGCAGTCAAAATCTTCTATTCTCTCTTGTCTTAATTAACTATATATGTG--CATCATTCCCAAACCACAGAAACGATCTGTGAAGAACCGCAGTACAATTTCTCTTCATCTATTTTTGACTC-------------ATTAAATAAAATCTTGTTTATACACAGCTGATCTTTCTTGAATCTCTAGAGACAGGGTTAGAGCATATTTACATTATGGAAACACTAGATACTATTGATCTGTGGATAGGAGCCTAGCTGGAA-TCTCT-CTCCATGAAAGTTTTCTCCTTTATCTTACTAATTGTCAGGGGGAAAAAATGACATGACTGTAGATCTTAAACTTGCCatccattaaaaaacaaactgcaTGCCCGCGAGCCACAAAAAAGGTCAAATGAATAGGCTTCAAACTATACTGCCAACATTCGCTACTACCTGAATATTTAGGccattatttttaattgcatctcTGGATACAAAGAGGGTCAGCATGCCATATATTCAAAGCAATGCTTAACATTTAAAAGCATATACAGTGTGAACCATGAACAATTTAACAAGTCCAAACTTCAAGCAGCACAGAGTTCATAAAACATGTAGTATTTTTAGTAGCAAATAACAGAACAATTGCAAAATATGACTGATTTCCAAGTCTGTGTAATACAATACTTGCGACGAGCATCATGAAGATGTACTCTTTTGTAAATTAATTTGGAATTATTTCTTATGTCAGAGATAAAgatgataaaaaatatataaaatacataaaagaaaagtgCACATTTTTGCAGCTATCAAACTTtatgtttaaaagattttttgtctcataaaaatatatttttctttgatgtttttataTCAACTATTTCCCTGAGattaaaaatttcttagaaacAATTAT--TATATCATTAAGTGTTCTACACAGATTTGGAAAAGAGTAATATTTTGCTAATTTGCAAAT-GTCAtattatttacttataaaataccacatttttaaaacta

a score=8543
s chr3           157358423 347 + 160039680 TACTTCCCTGCAGAGCTGAGCATGCTGTGAAGCTGAGCA-GCCATAAGCAAAC---AAACCCAAGCCTTGGAAGTCGCTCTAGAGTTGTCAGTAGTGAGAATTAAACCTATTTTCTTTTGTCAAAAGTGTAAATATGTTTATGATAAAGTATTTCAGCAAGAAAAACAGACAGAAGGAAGTTAAAATCTCACACGATTTTGACAGGAAAATTAC---TTCACTTGTAGCTTTTGACATAGAACAAAAGGGTGGTTTTATTTTGCTTGTTTGTTTTTAACTGAGTTCTGCTCATGGTGCCTAGAA-AATGTGAGGCCTCAGCAAACGCTTGAAGAGCGAAAAAGTTAAATGAAACA
s HiC_scaffold_1 144577691 337 + 233722169 TATTCACCTTCCAGCCTGGGCACCCCAC-AAGGAAAGCACGCAATAATCAAATTTGAGACAAGAACCTTAAAAACAGCCTCACATTTATCAGGGGTGAGAATTAAACTTACTTTCTTTTGTCAAAAGTGAAAATATGCTTATGACagaaaaattta-catgaaaa--agataaaaggaaattatatttttgcatgattatgagaagaaaaaaatatatccaaTCGTAACTATGG---------AGAAAACTAACTTCATTGTGGATTTTTGCTG-----AGAGTACTGACAGTCGTGCCTAGAATATTGTGGGTACTCAGTGAATATTTGCAGAATAAATGGAttcaaagaaata

a score=38298
s chr3           157368856 2348 + 160039680 atagatagatagagatagacagaCTGACAAT-----GGCCATATGACTTTATTTAAACAGCA---------AGTGTGGAAAATAAGAATTAGTTGGATAAGCATTCTTTCCCCAGAATTCTGA--TTTCTCATTCATGATTCCC-AAGATCA----CTATAATAAATCCCAAACTGT--AAGTCAACAAGATACTTTTGATTGTAAGCAACATTCCAATATCAGTAACATTAAGCTGCAAAAAGCTGCAACACCTAGGGTCAAATGAAGATACTACAGTCAAAGATAATTCT----ACCACCTTCTTAGGTCTAAGACAGTCAGTGAGGCTTCACTTTAGAATTTTCTAGAA-GTAGAGCACATTAATG----CCCAAAATG--------------CTCACTCTTCTGTCTCCTTCATCTT-----TGACAAATATAGT-----GTTAATTTATTTCTTGTTC--TATTTCTATCTTGTCTACT-----TCAATCATAAACAGAACATAACTTGCAGTTT---------TTTAATTGTGTT----TTAGCTAGATACAAATAA-TTAGAAAACATCCTTTTCTCTTGTCCTGTTGTCATTTTCTTCAAAACAGCAGATGGAATAAAAGTATCCAGGTATCAGGAAAGTACTTTTTTGTCTGCTCACTTTTCAAAACTCCCTGATATAAGCATTAGGACTGGGGAAAA----GTGAGGAGCCAGGGCTAGAGCTGGCTTTAGTGCAAAAGCAGAGAGACAGATATGCTACCTacacacatacaaatacaaacatgcacatgccacatacatacacacacacatacacacatacacacatgcacacatacaaacatgtacacacacatatgcacgcatgcacacacaATGCATGTATGCATGCACACACTCCACTAACACACATATGGCTGCATTGCCTCCCTAACAGGATCTTATGCAGACTGGTTCTTTTTCTTTTCAGTGTTTTCTGGGAGATGAGCCTATGTTGATCAGGGGTCACTAGAAGAAAGATTGCAGAAAAAAATCCATCTCTACCTCAGAGGTTCCTTAGTTCTTGTTTTTGTTGGTTCTGTTTTTTGGCTTGTGTCTCATGTGTAAAGTTAACCCAGGAGCTACTATGTGCTACACCAGCTGCAGCTACTCCTGGTATGGATAAAAGTTCATCAGAGAGCAGAGTACAAAGCAGTTAAAGCCTTCTAACTGCCTGCTCCAGTCATCAGTAACTGGAAACCTGTGGTGGCTTCTCTGACATTAGGTTCTTGGTTTTGCAGTTCCTGTCCCTGCCTTTATAC--ATCTTTGCAGATCTAGGACAAGTTGCCC--ACTCACTAGTTACCTTCTCTCAAAAGCA---------------CTCAGAAGAGTA-CATAAGGGTTCTGACC--ATGCATGCAAATCATGTTGGAGACTCAAG-GGCCCTGAGATAGGCAGTAACTGTGACAGACATTAGCTGGGTCAAGTGATCTAACTGGTAGATTGGCAGCTAGAAAAACTCTG-----------------TCATTTGACAGTGTATTGGAGAGTGGGATTTTTTTTTTCAGAAAGTATGTGTTTAAATATTAACATTTCAGGATCATATATTCCCAGAGATATGCATATGCCTTGAATCATCTATTTATTTCTGGGCCTTCTTCTCCATGCCTCGTCCACATTTAGTTTTAATTTCTGCCAATGAAGGACTGAGGTTCAGACTCAAGGTCACTGAAAAGGCTATGATTGTATTAATGTGCTCACTGGATATGCAGCAGAAATGTAATTTAAGGCATTAATATGTACGTACTAAATAAAGACATGCAAACCATGGGAAAAGTTATTTA---------------TTCACCAGTGATAGAAATAAATAATACACGGTG--TGTCTCTGGAAACAATGTGAGCTTGACTTACTCAGCATAAGCTGTGAGGGAGGGC-AAGCAAGCCTGCTATTCTGTGAGAAAGGTCATTCCTCTGATGACAGCTCTTCATAATTTTATGA-TTTAGAAAGAAAATAATTTTCCCTTGTTCTTCCTTTTATTGCTGCCCTGGATTGCACTGCTCACTAGAGATT--CCTTAGGC--------------GACATCTATT------------------GAGGTTACTGAGGACAG-ACCTGGTTGAAACTGA---GACTACAACTCTCTCTACATCTTTCTTCAGGACACGGGTGATATTTCAGCTTAGTCTAGGGACACGATTTGAGCCATGAATAACCATTTCAATTTCTATTGGAGTTTGTTTAGGCTTAG-ACCTACTAGCTTTTATACCCT-------------GTACTAAACTGCCTA--GAGACTCACTCAG-AAGTCAAAGCTGTACCTGTGCTACTCTTATGCTTTTGCCCAATAATCATGAAAACCACAGGAGCAGTT--GGCACAAATGCCCCTGAAATCTCCAAACACATCACCACCCAACAGCCACATTCT--AGAAAGGGTTCAACAGCTAAGATGACTGCCT-TCTTACACAT
s HiC_scaffold_1 144599182 2216 + 233722169 ataatgagataaaagtaaataaataaatagtattgtGGCCAGtcaatttaattaaaatagtagtgataaaaaatgtagaaaaacataATTAAGAGAAT----------TCCTATAAAGcctgaatttttttattcatgAACCCTGAAGATTAGCAGCTGTTggaaatctgaaaatattaacactaatCAAACCATTTTCACTATAAGGTGGATCTCAGTTGCTGTAATGCTAAA-TGTGAAAAATCAAGGGTTTTAGAAACAAACGAAGATATCATATTAGTAGAtaatttctttcactgtttttcttagtctaaaatgctcaataaatttatgatttaaatttttctaggGTGTGGAGCACATTAGTAATTTCCCGGGATGTCAATCTGTCagctcttgctcttctgtcttCTACTTTCTCAGCCTAATAAAtagatttttctgttcatttaagtcttttttaatacttttgtcTTCTCTACTCTAAGTCAATTATTTAAA------ACTTTGCAGCTTCTGGTAGTGTTCAATTGTGCTCCTCTTAACTAAatgtaaataacttttaaaata-------ctcttGCCTTGTG-----TTTCTACAAAAAAGCAGATAGTATAAAATCAACCAG----CCAGAAAATACTTTT--GTCTGCTCACTTTTCAACACTCTGTGTTAATAG---GAGTGCTGAGTAAAACATGGTGAACTTCTAGGATTATAACTTACTTTACTTGAAAATCTAAGAG------------------------CAGAAAC------------------------------------------------------------CAAAC---------------------------CACAAAATCTAT-------------TACTTCCCTT---CACAGAATGAT------CCTCCATATTAACAGCCTGAGAGAAAAGATGC----------AAGTATTTTCTGGAGATTGGG---------AATTGGGATCACAGGAGGTTGCATTACTATTGGAGA---------AGCTTAAAAACGCTTTAGAT----GTTTTATTAGTCCTAcat---agcatgtgtgt-gtgtgtg-------------------tgtgtg----------tgtgtgtgtgtgtgatgggggTGGTGGtgtgttacag------------------------tttatatctgcC-------------------------------------------------AGTTTCTGGTCCTGAAATTTTAATCCCAGCCCTGACCCTAACCTTTGCAGATCTATGACCAATCACATGGACTCTGTGGTCA---TTTCTCTAGAGGAGAAAGATAACTTAATCTCAGAAGAGTTTCCTGTACTTTCCTGCTTAACTTTTGCAAAGTGCTTTGGCTAATAAAGAGGTTGTCAAACTGGCAATTACTATCATAGGTAGTAAATCACTCAAATGGCCTAAATGGAAGATGGGCAGCCTACAACATTTTGGGTTGGTGAAATAGTTCTCATCTCAT----TGTTAGAATGTGGA-----TGCTCTCAGAAAATGCATATATAAGTATTAAAATTGGAAGAATAAACACTCCCTGAGATAAACCTATGCTGTGAATC-TACAAATACTTATACATCTTC----CCGTGCTTTCTCTGTTTGCATTTTTTACTTCTGTAGGTGAAGGACAGAGGTCCATGCTCAAGGTCATCGAAGTGCCTGTGATTTGATTAGTATTCTCAGTGAATGTAGAGTCGAAATGTAATTTCAGACATTAATATGTACGTACTAAATAAAACCATGCATGCTGTGGGAGAAGTTATTCATCATACTGGAATTTTTTTACCagttacagaaataaataatataatgtgtaTATCTCTGCAAATAGTATAGACTCGGCTTAGTCAACAAGAGCAGTAAAGGAAACCTAAACAGTTCTGTTACTCTGTGAGGAGGGCAATTTCACTGATGACAGCTTTtcataattttactattttagatagcaaataatttt-tcttcttctttagtgTATTATTGTTCTGGATTGCATTCCTTGTTGTAGTTTTACCTTTTGCTAATAATTCTTCCAGAAatgtattttcactgtttttcatATGGCGGTTACTACTGACAGTACCTAGTTGAAGCCTACAGAATTACAACTCTCTTCA-ATATCCCTGCATGACATGGGTAATATTTCAGTTTAATCCAGGGGCATGCATTGAGCCAGTGACAACCATTTCAATTTCTACTGCAGTTTGTTTAGGCTTAACATGGACTTGCTACCATAGTCTCTCTCGCTGAACCATATTAAATTTCTTATGGAGACCTGCTCAGAAAGCAAAAGGCATGGCTTTACTATTCTGATGCTTTTGCCTAATAATCATGAAAGCTGTAAGAAGAAATCCACTACAAATGCCCCACAAAGCTCCATAC----CACCACTCAGCAACCAGGTCCTTATAAGAGAGTTAAACAGCTATTaagattgcttctctttcatat

a score=29073
s chr3           157374108 1981 + 160039680 TGCCTTCCCAGAATCCTCTCGGCATGCATCTCAAGGAG-TTGTGTTCAGCAGGCTTTCATGTTTGCTGGATCCTAGCTGAGGATCTTAGAGGGTAGGATGAGAATGAATTAAGATATCTCTTATTTGTCTCCTTTT---AGAAGCAC---CAGTCTTAGCCAGGAC----TCATCCAGACATAGTGTTTGTGGTTCTGGGGAAA--------TTCCAA---------ATCTGGACT-----CCTTGCTATCCTGTA-------------TGAGCCAGACTATAAATTCCACAAAGTTTTAG------AAACATTCCTG--TGGCTCCTTAGCTCTTCCATTACACTGTAGAACATTCTCAGAACTCGACTCCCTGTACAATGCACTCCTG-TAATTATGCACTATTCAGTGGTTTCTCTTTTGGGCCCAACctttgtaatataaaagggatttttacatcctatttaatccttacaagaaccctgcaagatagtaatcattacttctgttttatagataaaaaaaaaaaaaaaaaaccaaagtcagcgaatttaaggtctttgctcaaagtcacaggactaataagtagtcaaacta--gttcaaattcagttcCAAAGTCACCCTTCGAAAGCTCTGATCTGGGGAAAACTTCAAGGCCAG-----------AGTAGCACAAGGTCCTGGTGAGGTAATGGCCAATCTGAACCGCTCACTCTGTGGCC-------TCCTGCCC--------ATACCTAAATG---------------CAAGCA----AAGCCCAGTGAGAAACTCAGA---------------------------CAACCCAGACC------------------------------------CGGGAGCAGGTGAGAGCCAGGTGTTTGCAAG------------------TGGCTTTCTGCT--CACCTTTCACCAAAGTATTCAACTTTG---CTGTCTTTCTGATTTTTGCTGCATGGACTGATAAAGGGACACCTGTCCCCTTAATGCTGATCGTTAACGCCACATATTTACGCACTTAATTGATTTCTGTTTTTTAAGGAGT--TACATTAACAACCATTCTGCTTGTGTCACTGAAATCTAAATGGAA----CTTTTGAATAAGAC----AGCAAGAGCA------------GTTTGGAACATCCTTTGTGGATCAGCACAGTGGTTTTTGCCGCACACCTGTGGGTC----------CTCAGG-------AACACTGCC-------------------AACCATGAAGCCATTGTTT---ATGGTTCTGGTCAGCCAGGGCCCGTTCTGTTATTTATCAGCTTTGT-------------AATTGTTCACCTAGATAAATGTGT-TGTGTATATGTTGCCATGAGTT-AATCACAAGGATATGTGTG----TGTGCTCAACCCCAGGGC---TCTGAAGCAACTGTATGAGAAGTAACAAGGGTCCTTAAAACACCAAAAAA----CACAACAAGATG------------AGAGCCCCTCTCGCTGCAGCAACAGA-GATGAGGCTGTAATGGAAGAACAATGTTTTCTTGAGTTTTAAA----------TGATATGTTTTTCCAATCTCTCTGTTCCTCTGAGCA----TAGCCTCCATTGCTCTG----TCCTCTCTC-----------------------AGCCACTTG-TGAGTTGAGGACAATCAACCTGTCAATTACTGC-ATTTCCTTTTGC----------AGAA-------AGAACAGAAAGCT-----AAGGAGCCTTCTCTAACC--------GCTGTCTGAC------------ATCTCAACTGAGCACTTAACCCCTAAAAGCCCAGTGCTACAGC---------------AACTGGAACCCTTAGAGTCAAATGAACAACGTGACGTCATG----AGGCAATAAGGAACTATCAAGTTCAGCCTTTCTTCTCCCAATGCCAGCA-CTGAATCCGGAT---AGAAACCTTAAGCACGGTGACATTTATTCA--CAGACATGTGTTTGCTATTGAATGCCTTCAAAGAGCAAAACAGCACTACCAGAATTATCCAGTTCAG-TCCCCGAAATGCCATAGAAAATGCAGTGTTTATTTTCAACCTCAAAGGTGAAAGAATTCAAATTCAAAAAGAACTCAAACTTTTAAAATGCAGGCCAAAATCTT-CACGTACAAGACTTTTGCTCTATGCTGCCATTGACTGGAA--ATTTCATCTTTACACTATTTGGGTAGGCTGTAATTATCATTTTCAACCAAATTATTTATGCATGAGCTTAAAAATGTT--CTTTATT---------AAGTTGATAGAGAAGTTTTA-AAAAATCTCT
s HiC_scaffold_1 144608417 2310 + 233722169 TGTCATTCCATTGTCCTCTC----TGTCACTCAGGTAGGCTGTGTTCAGGAGGCTGCTGTGCT-----GAGCTCAGCTGAGAA---------GACGCACGGGA--gatttcaga-atactgtagttctCTGCCTCTCAGAGAATCACGCACAGTGTCAGCCTCCTCACCTCCATCCAGACACACGGGCAGAGACTCTTGCCAAGGCCATGGTCTCCGAGCTCTAGTAATCCGGGCTTGTCTCCTTATTCTCCTGCACTGGCATAAAAACTGAGCTCTGCTA------CTACCAACCACTAGTGGCTTAATCATCTCTGGTTCGCTTCTTGGCATTTTCA-----CTGTAGCACATTCGTTGTATTAATTTCACCATATAACAcacatgtgatatttacacactaTGCAGTAGCTTAGTTTTCTAGTCTAGACTT---AATGCAAAAGGCATTTT-GCATGTTACTTAATCCCTGTAAATTCCCTGCACAGTATTAAACATCACCTCTATTTTATGCCTGGAGAAAACTGACA---------GTCAGC-----TACAGTCCCTGCTCAGCCCCACAGTACTAGGGAATGGTAGAGCTACGATTCAAATCCAGTTCCAAAATCACCCTTAACATGCTCCTTGCCAAGGCAAATGGCCAAGACAGGAAAACAGGACAGAGACACAGATTTTAGGTCTGAAAACAGCCA----------CTGACTCTTTGGACAAGCTGCTCTTGCCCTGAGCAGTGTCCGTAACTGGAGTTCCATTCCTTTTAAGCAGTGAAAATCCAAAAACAAGCACAGAGCCTGCTCCAGGAAGCACTGCTTCCTTCAGCCCACACCAAAGTACTGGCCTTTGGATGGCAGACTCTGAGCTGATGGAAGGAGGCAAGGGTCACATATGTCTGAGATTCACCCTTTTGAAAACTTACTTTCTCCTGGTgccactcaaaaatattttccacttttgtCTTGTCCTTTCTGGCTTGAATgcat--atttatgaa--------tattattttaatggTGATCATTAACCCCAGATAGTCACCATTTTAATTGATTTCTGTTACCTGTGAAGTATTCCATTACAGATAATTCCATTTAAAGTTATTAATTCTGAATAGTGGtgtttttttaacaaaatgagaaattagGGTAATAAAAGATGATGTTTGAAAGATTTTTCATGGGCTATGTTGGTAACATGTCTCACACCACTAGAGATAGTTTTACATGCTTATGCTGTTCCAACACAGcctgcaaaaaaggaaaaagctaatCATGAAGTCATAGCTTCTAACAGTTCACATTGGTTTGTTACCATTCTATTACTAATCATGTTCTTCTATATGCCAATAGACTTCCCTCCTA-ATCAATGTGCATGTGGATG-GTTACCATAAACTCAGTCACAGGGATGTACGTGCACTTATGCTCAACACTGAAATCTTTCTGGTATAGCCAGGCTGGATGGAACATAagttcttttaaaacaaataaaacagcacACCAGCAAGTAACTTTGATCCAGTTTtcttctccatgcagcaggaaacAATAAGTCAGAAATATATGAAACACCGTTTTGTGGATTTTaaagtctgttttttgttttttctccccaATTTCCTTGTTTCTCAGAACAAAAACAGCCTCTGTTGCTCTGCCAGTCCCTTCTTTTATGTGCCGCAGAACACCTGGTGGCCAATTGCTAGGTGGAGGATAATTAGCGCctcaattatcgccagtttttttCACCTGTTCCACTAGCATTTCCCTAGAACGTGAAGCTTGTCTAATTAGTCTTTTCTGACCCATTCCCCACCATCAGACTCAAGAAATAGCCCTTCCACCAAGTAATTAACCCGTGGTAGGCCAATCCTCCAGCTTTTGTTTCAACTCCGATTGGAATCattaaaatcaaatgaacaaagaaacatCATGGGACAGGGAATCAGAAGCTAAAAAgttctgtcttcctcctccctcGGCCAGCTTCCGAATCCAAATTACAGGAGCTTTAAGCACAGTGACATTTAGTCAGACACATATGTGCTTGCTACTAAACGTCTTGAAAGAGCAAAACAGCACCACTAGAATTATCAAGTTCAGCTCTCCGAAATGCCATAGGAAATATGGTGTTTATTTTCCACCCCAAAGGTGACACAGATC-------AAAAGAACCCAGA-TTTTAAAATGCAAGCCAAAAACTTCCATGTGTAAAACCTTTTCAGTAGGCTGAAACTGAATCCAACCATTGCTTTGTGATGTTATTTTGGGAGTGTATAAgag--atttt---tcaaattatttatacaCACTCATGGAaattgtgattttgttttatccaaaaagtcaacagagaagtctagcagaaATTTCT

a score=18373
s chr3           157377947 642 + 160039680 AAAGCTCAGACATAAATGTGGAATCATCATCTAG--TTTTGTTTCCTGTGCCAAGGATCTT-----------GTGTTTCGAG-----TTTTTCAGAAAGGTAAATGAGACTTCAG--------CTTCTTTAAAGTTGAAGACAGGCCCGGCTTGAGCTAAGACTGTAAAGGAAGCTAAC---------AGGGAAA-------------------GTATCTCCCAAAGTCACGCTTTTCATTCTTG-CAGGTAGTAGTGTAACAAGA-TCCCTGTGTGGATGTGTTATCAGAGaaaataagaaacaacaacaacaacaaagaaaaactaaaaactgaaaaaaaaaaaaaaTCCAGATAAAGTAAACAAGTCCGAAAGGCTCGTTTTTCATTTGTTAACGAGCCTCCGCACAGCTGTTGGCTGTGACAGCAAATGATTTAATGAGTCCAATTTAAAATGGGCTCTTCTGGGTAAGATCGATGTCTTAGAAAATAC-TTCTAAAATCTTGCAGCTCTAGCAAATGTAGCGTCAATAAAGCCTGAGAAAAACCTGTAC-GCACTTCCATTTTCTGATTTTTCTA---------CAAGCCAAATGTCAAGCACCCTGC------------------CCCACTGCCCCTCTGAATGTACCCTAGCAGCAATGGCTGGCTAGGTGTTTCTGAAAGACCA----------------------------------------------------TGTGGGAAACCGACTAGTCAACAAGTCTCTCTGGA
s HiC_scaffold_1 144613862 745 + 233722169 aaaactAATACATAAATTTGGGGTCATTATACAGAAGATTTTTCCCTATACCAAGAATTCTAAATTTCTCAGGTGTTTCCATACTACCTTTTCAGCAAAGTAAATATGGATTCAATGGTTTCCCTCCCTCAAAGTAGAAAGTAGATCCAA----GGTTCACTTTCAAAAGGAGTTTCACTACTGTCTTATGTAAACTTAGGTATTGCCTCTGTGATGTTTTCAaccttcacatttttaatttttgtcaggAAGTACTATTACAGGAACCCCTTTGTCAATATgctaccagaaagaa-agaaaacacc-------------------------ctGAAATAAAGGAAGCAGCCCTATAAAGTAAACAAGTTAGAAGGgctcatttttcatttgttaacTAGCCTCCACATGGCTGTTGGCGGTGACAACAAATGATTTAATGAGTGCAATTTAAAATGGTCTTGTCTGTGCAAGATAGATATCttggaaaatactttttaaattcttgcaACTATAGCAAAGGCTGCTACAATATACCCTGAGAAAAATCTGCactgcatttccatttt----ttttcctaaatacgTAGTAGTCCAGATATCAAGCTAGTAGCAACAAGGAGCATAACATTCCCACTGTACCTGTGAGCATTTTCCAAGAATAATGGATAATAAGATGTTTCAGGAATATCAGCTCAGAATATCAGGAATATCAGCTCCAAAAGTCGTAAACATTTATCAACTGTGTGAAAAAGTGATTAGTCAACACGTCTTTCTAAA

a score=7983
s chr3           157384257 291 + 160039680 GGCCTCAGAA-TAAGCTCTCTTTGATTCACACCTCTCGTCTCTGCTGTCTGCTTATTATCTTTGCAT-TTGTTGTGTGAATTAATAAAATAAT-GAACATGAAAGTTTTCATTACACACCAAGTGATTCTAAGCCACCATCACCAGCCCCTCACCTCGTCTGATATTGCCTGCTTTTATATTGCTGTTTGTCCACTGTCTGTTCTGGAAGGTGTTATAATTATTGTAGTA-------------ATTACCA----------CCTGAAATCTGGCCTTGCAGCAGTACATATCTTCCCTTTGTGG-GGTTTTCCTTTAAG
s HiC_scaffold_1 144620139 316 + 233722169 GGTCACAGAACTAGGTTCCTTTTGTTTCAAATCACTTATCAGTActgtttttcagttattctgCCATCTTCttctatgaataaataaaaatatagattgcAAAAGTATTCATTGCACGCTGAATAATGCCTGGCCACCCTCACTAGCCCCTCACTTTCTCAGATATGGCCTGTTTTGACATTGCCATGTACACGGTCTCCATTCCATATTCTGCTGTAATTATTGTTGTACTTATTTATGATGAGTACCACCACTAGCATCCTAAAGCCTCTTGTTCCTGCAGCACACA--TTCATTTTGGGGTAATTTTCTTTTAAG

a score=14103
s chr3           157389841 486 + 160039680 CAGTTCAACTTACAAAACTGTGTTTGCTGAGCATCTTTGTGTCAGAGGGACTGAATGAAGCTGTGAAG--ACTCTACAGTACCTCATCCT----------CTCTTGCTTCGTGACCACACCACCCTGGCTCTTTATCAAGGTCTTTGCTGTACTCAAGAAACAA------AGCGCTCATCTC---------ATGCTTCCCCAGCC----TGCCAGGTGCATCCCAGGAGACTGTGAATGCTTTTGCATATGAAATCCTAATTATTTCCTATACCTGAGGATAGCAGCTCTGTAGGGGACTCAGCAGGATCGCCTCGATTGCAGAATTATGTTCATTTTGTGAATTCCATGGCAGTTCCTGTTTTTTTCTTT-----------CTCTCTGGTTTC-TATAATATTGAAGAAAA-TGTTTTTTAACTGCAATGTAAGTTTATAATTAACTGGAGCTATA-TATTTCTGCTTATGTGGTATATA------TTCAATTTGTTGAAGGAAATTTCAGTTTCTCTCTTCAGAAGTCACTGACG
s HiC_scaffold_1 144626251 527 + 233722169 CAGTTCAGATTACAAGCATTTATTTTCTGATCATCTACACTTCAAAGAGATTGAGTACAGTTGCGCAGTCACTTAACAATAGCTCCTTCCACTCACATTCCTTCAGTTCTGTGACAACCGCGGAGAGGTGCTTTATCAAATCCTTTGCTGAATTCAAGAAACAAGATATGAGTACACAGTTCCCCTGATCTATAGCTCGGCAGCCAATCTCCCAGGTGGGTTGCAAGAGTCTGCAGAAGTTTTCACATATGAAAGCCTAATCACTTCTCACACCCGAGGACAGCCACAGAACAGGGAACTGAGC---ATTATCCCGACTGCAAATTTATGTCCA-TTTGTTAATTTCATAGCGATCCCTGCTTTTGCCTTCTCTCAGACACACCCTCTGGTTTCAAAAAATTCTGAAGGAAACTGGGTTTTAGCAGCAGTAAAAGTTTATAATGAAACATAGCCATGTTATTTCTGCttaca-gatatatatatttttttaacctgATTAAGAAAATTGCAATTTC-----TCAGATTTCTCTGGCG

a score=15891
s chr3           157400277 1228 + 160039680 AAAAACACTCAGAGATTTTGTTTCAATGTCC----ATTTTTCCTCTGATGTT-----CTTTTATTTAATTTTGCAATGGCATCAGTTCTCAGCAGGCTGGAGACC---AAAGAACTGGCCCCTTTCCACCAGTA--CAGACAAGGACTTCTCTAGGTCAAATCTTGTGAGGGAG----TCTATAG-----CTGTGTGATGTCTCTGTCCTCAGAGGG---------------------------------CTAGAGGA---------------------------------AATAAGGGCAAGTTGCTGAAATCA--GCTGCTGTCA-CGTGATGCTTG---ACACCTCTCAAGGTTCCCAGGAACC----TCCCCTTGGACGCTTTAGCTCTTCAATTGT--AAATCCTCCTGTTGCCTTCCT-------CTGTG--------TAATGTCTCTTA-AGCTTGTCTAAATTTTCAAAAATGTGTAGAACTCTAAATTTTAACCTAA-TAAGTAGACCACACAGATTCTGCCAGCCACTGATCTACAGTTAGACTCATATCATTTCTCTGGAG-TGTACAAAGCC---------------------------CACTCTGGGCCATGAAAGCAAGGAGACTCTTTCTGACTGGATCACTTAAAGGCTAAA---ACTCTCAGGGCCCCAGACTTCCTGAAAGATCCACAAGCACAT-ATTAACTGCTACCAATGCGTAATCTTCACAGGTATGAACCAGAAAGACTATGAAGAACTACCCAATC-AAGCAATAGATGCCACTCATTAGAGTAGAGATTGG-TGATGCTGAGATTCAGCTACAACTCCCTGCATCCCTAGGAAATAGCCCCTGGGGATGCTAGACTG--ACAGGA----------TGGTGACATCACAGTATATTCTTCATGTCTCTT-CTCCCCTTTCCCACTGCATAGGCTTCTAACT----------------------------GCCAATATGTTTTCTGCTTTATATGTGG------------------------------------------------------------------------------------------------------------------------------------TCCCTGTGGCTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTCGCATAATTTCAGAGATGATGGAAAAACTCACAAAGTATTAGAGAAGAAATGAAACAAAACATGAACTGGTAGGAAACT-ACTGGTATTTATA----TTTATGTTCTGGCCACATACATTTTGATAGATTCTACTT-ACAATACTGGAGATAGTACATATGTTCATTTCTCCTTTCTTTCCAAAGTGCCCTTGAAATAACACGATAA----------AAGGTGAATTTATACAGGCTTTCAAAATACTAT---AAGCTAAAGTTTTACAAAA------CCCAAACCCAAGGC-AGGTAAATCAATCAAACCCATGAAGAAATAAAATGGGGACATCAGAG----AAGATGGAAGCAGAAG----------------TGAGGACCCTGCATGAAAAGAACCTCGGCTTCTTACTGATTGGGCAAtgtac
s HiC_scaffold_1 144638712 1743 + 233722169 aataatacttggagctttttgttttctgtccctttatttttcttttctagttattagtttttattttcttttacaaacaTACCAGTCCTCAGCAAATTGAAAATTTAACAACAACTGATCCCTTACCACTGGGAATCCGAAGAGGACAATTCTAGGTCAAATTTTGTGAGGGAGAGTTTCCATAGGAACTCTG-GTGATGTCTCTTCCCTGAAACGGACATATGACCTAGCCTAAGCTCTGACTGCAAGCCTGGGGGAGGCAACTTCGAGAAATGCAGACAGCGAGGGCAGAGTGAGGTCTAGGTACTGAAGACACAGCTCTTCTCAGCCTGCTGTCTGCATACAGTGTCGCTGAATCCTGGGACCCACTCTTCCACTCGAGCCGTCGGATCTTAGGGTGTTAAAATCCTGCCATTGCTCGCCGTATGCTACTGCGCTACCCTTTAATGCTTCTCCCAATATGCCCAAATCTTTACAAGtgtacaaaactttaaaaagtgaccTCCCTCACTGTATCAACTATTACCTGAGAGCCCTTGGCCGACAGTTACACCTCTGCCATTTCCCCACAGATATACACAGCCAAAATGTTTCCTTTCAGGGCTTTAGAATATATTAGACCCTGAGGACAAGGTCAGGCATACTGGCTGAGTC-TGGAAGAGCTAAATGAAATCCCAAAGTTTCAGCCTTTCTGGAAGATGCACAGGCACCTTCTTGACTGCTGTCAAGGGATTGCCCTCA-AGACAGGGACAAAAAGAACTCAGAACAGCCACGGAGCCCAAGCAATGCACACCGCTCATTTGACTGAAGCCTGGACCATGTCTGGTTACAGCTCAGATCCCCTCCTCTTCCAGGAAATAGTCACAGAGAATTCT-GACTGGGACAGTACTTACTAATCTCCTGACACTCC--TAGCTTTATCATgttttttgctctcttttctcACTGCATGGAATCCTATCTATTCATAGGACAGGAAAGTAATACATCTGTCCaaatgctttctgctttacacCTGGACTAATATTCTTtgattctgtctctctccctctctgcctgtctctctctctctgtctctctctctgtctctgtctctctgtctctctgtctctctgtctctctctgtctctctctctctctgtctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctgtctctcccctctccctaGTCTCTTGTCAATCACAACTAAGGCTTTAGGCATGCCATGCAAGCACTCTATCATTGACTCACACCTCCAGATCtggattttgttattttcatcatTACAGAGCTGATGGAAAatctcacaaaata----------aatgaaataaagcatgaTCTGTTAGGAAACCCATCAGTATATCTACAGATACATTTTCTTGCCACATAAATTTTGATAGATGCTACTTCAGAATGGTGGAGCGAGTATGTATGTTTATCTCTCCTCTCCTTGCAAAATGTTCTTGAAATAACACTATAAAACTATAGCGAAGATAAATCTATAAAAGCATTGAGAGTACAATGAGAAGCTAAAGATTTTCACAAGTAGCTGTAAAACCGAAGGcaaggaagaaaaatcaaatcaagGA--AATTATAACAGAGGCATCTAAAACTCAGGATGTAAGCAGGAGAAAATTGCAGCCAAGCTGGGAACTCTTCTCCGGACAAACCCAGACTTCTTCCTGAATGTGAAAGGCAC

a score=18516
s chr3           157402965 1575 + 160039680 CCAGGAATATGCCTGAGCCTCAACTGAATGAGCCCTTAGCCTGCCAGAAGAAAGACAGATCTAAGAGTTGACCCTGAACTCCTCCAAGTCCTCCAACAGCTCCA----------GGAGCCTGTTTCAATTACAGTCATTTCAAATGTTGGGCATCCAGGCATGAATTTCTAGAGCAAGGACTCATAAGGGACCATAAGATGT------AAAGCTTCAGGGGGGAGTAAAGGGTAGTGGCTATAAGAGTCACTGCGACTCAGGTGACTTCCCAGGGGTGAAGGAGTGGAGAGAGGATCCTTCACCCA---CCTGATGACCTTGCTGTGCTCAGGGGGACCACCTCACACATTTGTGTGTGATAATGGTGTCCT--TCCTGC--AAGACAGCC----------ACCTTACATGTGAGTAATGCTTCACTGCTC----------TCCTGTTTTACTGT--GAAGACGCATGTCAGACAAGGCACTGACTAGAAACAAA----CTTCTGAT----------GAAAGCACTG-GCAGTGGCTC--------AGCTCTGAC-AGAATGCCCGTGACTTTAACCCCTTGATTT-----------------------TCTCATACCT----------------AAAACAGGAATCTTAGTTCTTTCATT---GGT----------TTTTATAAAGTTTCAAGTGAGTTAAT--ATGTGTGAAAACCCATGTACCACAAGAAATCTGTTAAATTTCTATGTTGTTGATTTTTCTTTGGGGTAGGGTTTGTGTGTACAGGGTAAGATTTCACCACTGGGCCACGTTCCCATCTCTATTACAGTTGTTTTAAGACAAGAGTCAGCAAACTGC-----------------------ACGATACTAAATG-------------GTAGCCTTT--------TTTTTTTAGGT---TAAA----TATAAGAGCAAACCACACTTAGCTCACAGCCCCCCCACACACACACACACAAAACAGGTTTAGGCCAGCGTTGACCCACTAGCCATAATTTGCCAAGCT---------------------------GTAAGGGAAGAAACATCCATTCCCTCCCTATTAAAAGAGTGGCATCTCCAGCACTGAAACCTAAATTACATATAAAAATAAAAGA----GTAATACAAAATTATTCTCCCAAGATTTGTAGGCTGTGGGTAGG-AAGAACATTGCCATCCTCCTCCTTCTCTCAGCTGAGCCTAGTCCAAGAAAGTCATCCC---TGGA-AACATTATACCTGTGGGAACGA--TATTTATCCCCCGTGGATGAATTATGTTGACAACATTACAATCCAATGTTGT-CAGGAGCCTGCTTCATTCTATAAATAAATTTATAGGTATCAATTTCTCAGGCTATTTCTGTGTAAACATCCTCCTTCTC-AGACAGAATGGAGAGGGCACATATGCCGATATTATTGAACAGAAGGAACATA-------GAGTTGAAAAATG--------TCAAGTCAGCAAAATCTTGGGAA--AGAGAAGCTGGAAGAAGCAAGAACAGAGTCCTTGGACACATCAGGAT--CTGAGTGAGCGGCCAGGCCAGGCCAGGGCCCCAGAAACCCTGAGGAAAGGGAACTGGCTTTTGTGG---AAGCAATACCTGGATCTGTAGGATCTGTATGCCCT---ACCCTGGGAGGCCAGAGGAT-TCCTGAGTAAGTCCCCACGGTAATCAGGCTCTAAACATGGAAGGCTGAAGCTTCATGGGGTCAGTGGCAGACAGGTAACCTGAAGCATTTAAATTATTGGG
s HiC_scaffold_1 144640501 1683 + 233722169 CCAGGAGTATGCCTTCAACCCTCCTGAG-----CTTTAACCTGCCAGTAAGCTGACCAGCCTA-GAGTTTATTTTAAGATTCTCCA-GTCCTGTAACAGCTCTGAGGAATGTTTGGAAGTGTTTTTAgttataaaaattccaaatattgGGCAGACAGATACTGAGCCTCAGAGTGAGGAATCATAAGGACCAGCAAGGTCCTGTACGAAATCACTGTGAGAGTGTCACGGGTAGGGACTCCACGAGCT-----GAGTCAGCCCACTACAAAGAGACTGGAGA-TAAAGAGAGCCTTGGGCATCCAGGTTTTAATG--TTTGCAGCACT--GTACAGCCAAACCAGGCAT---------AGCACGGTATCTTATTCATGCTTAAAGCAATCTAGGTACTTTACCTTGTACATGAGCACTATTTCCCCGATCACATCGTGATTCTAATTTCACTGTTTGAAGACTGGTACCAGGAATGGGACTGATCCCAGACAAATACACTTCAGATCACCTTCAGAGGCAGCATAACACAGTGGTTACCTCTACAAGCTCTGATTCCAACTTTTGTTAGTGTAAATCTTAGTTCTAACATTTAGACGTTATAGTAGGCTCTTATATTTCAGGTTTCTTGTCTGAAAAACGGGGAC---AATCCTTTCATTCTTGGTGCACCTAATATTTCACAAGATTTCA-GTGAGTTAACTCCCATGTAAATTCCCATGTACC----------TGCCAAA------------------------GAGAAAAAGTTT------------TAAGCTGTCAT--------------------TCGATTCTGCCCATTTTAAGACAGGAGTCTGtaaactttttcctttcaaaagctggagagtaaagattttaaatattgaaGGCCAAATATGATCTCTGCTGAAGATTTGTGTGGgtgtttaaaattctttaaaaacagaaaagaaatagctcATGGCT---------GTACAAACATGGGCCA----CAGGTCAGAGCCGACCCAATGGTTGTATTTTGCCATGCTCTGTCTAAAACATTCTTTCACTTTCTGTTAGAGGGATGAACACCCattcatttcttattaaaaaa-tggtAG-TCTTATACTGAAATCTAAGTCATCCATAAAAGTGaagaaacatgtaaaataaaattattctttccaGATTGGTAGACTTGGAGAAAACAAGCACATTACTAGTTTCCGCCTTCTCGCAACTGGGCCCTGTCCAAAAGACTCATCCCAGCTGAATAAAATTACACTTGTAAAAATAAGTTGTTTATCCCTGTTAGATGAATTATGTTGACAACATTACAATTTAATATTGTTCAAAACCATGAATCACCCTGGAAATAAACTTATAGATATCAATTTCCCAGACACTTTCTGTCTAAACATCTTTCTACTTAAGACTGAATAGGAGAGGTTGCTGAATGGGTAATATTAAGCAGAAGAAAGATATATAAAGGAGTTAACAAAAAAACTGGATTAAACTTAGTTAAGCATTAGAAACTCTAGCATCAGAAAGAtgcaa-aagaaacacacaaaacacAGTAAGTTGCCTGTGTCTATAGCCAAGAC------TTGTCTCTGAAGCCTAAA------------GCCTTTTGAAGAAAAAGCCTTACAGCAATCTG--GGCTCAGGACCTCCCATGATCTTTGAAGGCCACCCTCTCCCCTAAGTGGGTTGTGATGCTAACTGAACTTGTAAAATGAGAGATTATGTTTTTACAGAGTTTCTACCAGATTCTTATTCTGAAACATTAAAATTcctggg

a score=37689
s chr3           157408204 1729 + 160039680 TCATCTGGATTTCTCTCA-AGAATCTTCCCTAAAAAAAATCTAGCATCCCAACAATGATTTCGCC-ACACTGAAGCAAGCAAGATGTTTCTA--CCGATTTGTGTTAGTGGT----TCTCTGT-TTCACATCCTTCAGTGGCCTCGAGTT-CTTACAATAAAAATCCATATATATTATTCAAGGCACTTGGTAGCTAGGCT----TTGCCTACTCAGTCCCCAC---CATGCCCAGTACCT---------------------TTAAGAACTGGATTGGGAGTCAAGCC-----------------------------------CACCTAGAGTGCTAACTTGAGTCTCC---------------------ACTTGCT----TATTGCTTCTGAAAAGGAAACCAGCACCCACAAAAGTCAATAAAAAATACCCCCACTATCCCCCCCAAACGTTCTCATTTA----ATGTTTTGGCAAAACAAACCTACAATGACTGTTGAAAGCTGACATTAAGCTGGATTT-TAAAACCAAATAACATGTGGCACAGTGGTGTTTATCAGTGGCCAGTAATTTGCTTCATTATC--AATTGTGCATTTTTAATGCACCTGCCAAAAAGTTCTCTAGTTGAAATTGCATGCACGCTGAAGAATGAGAAGAAAACTGGGAACATTTT-GTTGAATAGCTCCACAGT--CGCCCCTGCTTTGACCCAGCTGAGGCGAATTACTAACTGAATGTGTTTTGCATATAATTTTTCTTAATAGAAAAGTCAATTTCCCCCTGGCCCACAGaaataaatattgagcaagtcatttttttaaatatccattccaaggggtgacagaatattagcatgcctccagggccctcgtctcCAGCATGCTTGTGCCAGCCCC-CACTTTTATAGGCTCTTTCTTCTA---GAAGTCAGCTGTACCTCTCTC----------------TTCCCT-CTTATCTTAAATACCACTCATTTAAAGAGACTCCCCGCGG-CTGTATCTAAGGC----TCTCCCTCTTGCTCTTGAGTTTTTCT-CCTTTCCCTCACCGCCCCAC-------------------------CACCACCTCTCTCTTTTTGCTCACCTATTTTTACACATCCTTAGCTCCCACAGCAAGTAATTCTGCCCTTTTTTGTTGAGTTGTATAT-CTAGGCATCTA---CATTGCTTAGAACAC-TGAAGTTTCCAACAAGTGTTAGATA--------AATGAATGAATAAGC-TACAAATAAA-GAGTGTTAGATT-------TCTGTCTCCTT-CTGGAACTCTCCCCTGCTACTTGTGGCTATGACATCTGGTTATCATAATGTGCTTGAGTCTTTGGCTATGTGCTGAATTAAAGGCAGACACACCTGCTGCCCTGAACTCAGGTACAAGGCTGTGCTCAACACTAAGGATTTAGATAGCAC----------AAGTTCA-----TGGTCTCCTAATGATGTTAT----GGCCAAACCTCCCACATTTCCCCATAG-TTCACAGGGATCCTTGCAGACACTAG-GAAACAGTTCAATTACTGAAGTTCAGTCTCCTTACTCAGAAGGAGCCACAGATGAGATACAGCAATAGCCATCTTAAA----TAAA------CAAG--------GAGGACTG------------------------------GGTTTGGGCTGACTGGTACAACA--------------------------------------GTTGTTGTCCACAAACACTGTTTAA--------Acacaacaatcttccatgaaagtaggtgctgctatgataacccattctacacatgag-agattccaggacaaggatgttaactaaattgtacaag-TGGCCCCCTTAGGCACTAGCAGAAGCACAGT------CAGATCTGACTTTA----GAACGCTTGAGGTCTTGATTTCACTTGTA-CCTTTTCCCCAGTGATCAAATTT----AGAAGTGCAAGCTCATTTT-GAAACCAAAACTTATTAA
s HiC_scaffold_1 144648350 2018 + 233722169 TCTTCTAACATTCTCTTAGAGAATCCTCCTCTTTAGAAGTCATATTTCCCTCCCAAGCTTTGGCCTGAAATACAGTAAGAAGCATCTTTCTAAACCAAG--GCATTTGCAGACTCATTTCTGCCTTCGTGCTCTCCAGAGACCTCCTGTTTCTCACAA----ATTCCATGTACTTCCTACCGGGTACTTCTTCACTAGTCTCCATTTACCTTTGCAGTCTCCTCTCACGTGCCTTCTCCCTGTCACTTGATGCTCCAGTGACTTGTGAACTGGATTAGGGGTTGCACTGTGCGATGTCCTCACCTCGATGGTGCATGTTATAATACCAAGCTTGCTAACTTTAGTCTTCTGCTCCTCCTTCAGTTGCAATAGTTACTCTGGTGTTGCTTCGGAAAAG-CAGTCGGTGCCCACAAATGTAACTGAAAGATATTCTCCTCATCCCCC--GAATGTACTGACTTATCGAATATTTCTGCAAAACAAACTTAAAGTAACAGCTGGAAATTGACAGTGTGCTGAACTTCTAAACCCAAGTAATACATGACAGGAGGCCGTTTGTCAGGCGTGAGTCATTTATTGCATTATCTAAACTTTGCACTTTTGATACACCTGCCAAGAAGTTCTCTGGCTCAAAACTCACACACactgaagagagagaagaaaacggAGAATGTTTTTGCTGAATAGCTCCACAGTATTGCCTCTGTTTGTACCCAGCTGAAGGGAATTACTAACTGAATGTGTTTTGCATGTAATTTATCttaatagaaaaatcaatttcTTTCTGGCCCCCAGAAATACATATTGaacaaat-ggttttaaaaatatccattttaaGGGGTGACAAAGTGTTAGCTTGCCTTGAGGGCCCTCATTTCCAGCATGCTAATGCAAGCCCTGCTCTTTGtcatcctctctcctctctttgatTCAGGCTTTACTTCTCTCTcgctattatttccttttccctactTACTGTAAATAACACTCCCTTAAGGAGCTCTTCCATGACCCATAGCTAAGGTAGaatgttctttttattcttctgacTTCCTATACTTCACTTatgattttattgtatatgtattctattttattccGTATCTGctctattttattatgtatttgttCTTCTAGACCTCAAGTTTTGGAGACAGAAAATGCTGCCTTTGTTTATTAACTGATATATCCCAAGTACCTACTTCAGTGCCTAGAACATATAAGGTACTCAATCATCATCAGATACCTAGACGAATGGATGTATAAATATACAAGGACATGACTAGTCCATTGCGAAGGTCCATCTCCTTGCTGGAACTGTCCCCTGTCATTCACCAGCATGGCTTACTATTA-CATGTTGTGTTTAAATTTGTATCTATGAGCTGAACTAATGCCAGATCCACCTATCGTCCCACACTCAGGCATATGACAGCCCTCAACACTGGGTACAGAAACAATGCTAAGGCAATAAACCTCATGAGTTGGCTTCTTCATAATCTTGTTTAAGACTAAACCTCCC-CATTTCTCCCCAGTTTCATAGAGAATCTTCCAGATACTGGCAAAATAGCTCAATGAATAAAGTTCTAATTCTGCAGTTGGGCAGAGCCAAAGCT--CACACAGCTTCAGAGAATTCAAAGCTTCAAAGGATGTCAAGCCAAGGCAGAGGGCTGGGGAATTATTGGTATACTGTGAAATAAGTAGGTTTCTTCTGATAGACACAATCACTCCAGTAACAAGTGCTATGTACACACCAGGCTTTATGTTGTCTTCTACAAATACTATTTGATTTAATGGACACAACAGTCTTAC---CAGGTAGGTAAAACTATATTAATCCATCCTATACATGAGAAAACTACAAGCCAAAAGAGGT---TACATTGTATACGCTCATCCGATTACAGACCGATAGGGTCACAATTCCAAATAGAACTGTTTCCATGATAAATACTCAA-------ATATAGCCTGTGTTCTTTTTCACAAAAATCAACTTCTAGAAGAAATGCAAGCaagtttcaaaaaccaaaacaagttaa

a score=39310
s chr3           157409922 1170 + 160039680 AAACTTATTAAATAAGTAATCAGAGATATGTGAGCAGCCATCTTGTTCCTG--TCCCTGACAGTCTCCAGTCAGGGTCATAGGGACACAGAGACA--------------------AATGCTGTCCGGGGTAGTACTTTCTGCCACCTCCATAGTGGGCCCCATGTCTGAAGAACAAGGCCATCCTAGGTCCAGGGGTATTACAGGCAACAAGAGTCTTTCACACAGGACAGCATCGCCTTGCCCCTCTAGCACCTCTTCCTGAATATGGAGGAAAAGTACATATCTTGTGCTGGTTTCTGAGGAAGTTTTCCAGTTCCTTTACCCTAAGACTGCTGTAACAGGACCCTACATGCTTAGAAGTGGGCTTA-CTTGTATTTTCTATCCAAAGAAATATATGTGGTTACCCCAGAGACCTTCTCTACCATATCAGTAGTAGGGTTGACTGTCTGTGTGATT-AAGAAATATGGCGCCTTTATTGGAGAATTTATTGACAAACTTAATGAGGACAAAACTGCTCACCTAGAAG---TAAAGCAGTTGTGCATCACACAAATCCAAGACGCAATCGACCTGGAGAAGGCACAGCAGGCACCAGGTCAGAAGCACCACTACCTCTTCGATGTTCAGAGGAATAGCATTGCCCTGGCCTTGGAGGTCACTTTCCAGGAACAGCTACATAGAGCATATAAGTAGGTAAAGAATTGCCTGGACTACCATATTTTGGAACAGGGCGTGATGTGTTGCAAGGAGGAAAAGCACATGATAGCATGGGTAGAGAAGCATGTGGTGCAGAGCATTACCATACAACAGGAAAAGGAGACCATTGCCAAGTGCATTGAAGATCTAAAGCTGCTTGCAAAGAAGGCTCAAGCTCAGCCAGTTATGTGAATGTGTCTGTCTCAATTGTGATAGCCAGAGAGAGTTAACTTAAATGGGAACTAGTCTATGTGAAGAACTCTTTCTGTATGGATGTTT--TGAAATTACAGTGTACCTTTCCTAA----GAAATGATCAAGG-TCCATTTAGT--GGCTTAACTCTATTGGCCAGTGAG--------------------GTATTTCTGATCCTTGCTCTGTATCCAGAGTTGTC---TGATAATATTTGAATAAGCAATTTGCAGCAGCTCGCTGCCCAACTAAA-ATTACCAAGTTATATTTCAAACTTATAATTAGTTAAAAGGTCTTGCAATAAA--ATGTTTGAAACA
s HiC_scaffold_1  92645731 1121 + 233722169 AATCTGGTTGAATCATTAAGCAGATAT---TAAGTAGC----TTGTTCAAGATTACTCTGCCGGCTCTGTTCGGGGTTACGGGAAGCTAAAACCATTTCCTGGACCTTTGTTGATCATGCTGTCCTGGGTGGTACTTTCTGCCACCACCACAGTGGCACCCA-GTCTGAACAATGCAGCCCTCCTAGGACCAGGGATATTGCAGGCAACAAGGATCCTTCACACAGAGTAGACAGGATTTGTTCCTTTCCCACTTCTTCCAGAACTTggtggaaaagtt--tattttgggctGACTCCTAAGGAATTCTTCCAGTTGCTTTATCCTAAAACTCGTGGAACAGGACCCTATATGCTTGGAACTGAGCTTATCTTGCATTTTCTGTCCAAAGAAATACATGTGATTACCCCAGAGATCTTCTCCACCATATCTGTGGAAGGGATACTtatttacagaatttaaaaaatacaatgtctCTTTTGGATAATTTATTGATAAGCTCAATAAGCAAAAAATTACCCAACTAGAAGAGGCAAAACAAGGTTCCATGAAACAAATCCAGGATACAACTGAACTGAGGAAGTCCTAGCAGGCACT---------------------------TGTTCAGCGCAAC---------------------------------------------------------------------TACCTGGACTATCATGTCTCTGGGCAGAATATGATGCATCGAAAGGAATAAGAGCACATGATAAGCTAGGTAGAGAAGCAAGTGGTGCACAGCATCTCTCCACAACAGGAAAAGATG---ATTGCCAAGTATATTATAGATCTAAAGCTGTTTGCAAAGAAGGCTCAAGCACAGACCACTGTGCAAAATTGGATAGCCCAGTTGAGGCAGCCAGAAACAGTTAAC-TAAATGGAAACTAGTGTATAT-AACAAAACTTCCCATATTGCTGTCTACTGGAATTACAGTTTACTTTTCCTAAAAAGGAAAAGCTTGGGGTTTCGTTTAGTGAGAACTAAACCTATTGGCCCAGCAGATGGTTCTCATCGTTactctgcattttttttccttactctGCATTTTGAGTTGTTCTAtgatcacttttaaattttatttttactaaatctTATTACCTCACTAAAGATTATCAAATTATAGGTTAAATTTGTAATTAGTTCTATGATCTTGCAACAAAGGacaactgaaaca

a score=9035
s chr3           157410093 150 + 160039680 GGGTATTACAGGCAACAAGAGTCTTTCACACAGGACAGCATCGCCTTGCCCCTCTAGCACCTCTTCCTGAATATGGAGGAAAAGTACATATCTTGTGCTGGTTTCTGAGGAAGTTTTCCAGTTCCTTTACCCTAAGACTGCTGTAACAGG
s HiC_scaffold_1 117146557 148 + 233722169 GGGTTGTGCAGGCAACAAGGGTCTTTCACACAGGGCAGCCAAGATTTGCTCCTGTACCTCCTCTTCCTGAATATGGTGGAAAAGTTC--GTCTTGGGCTGATACCTGAGGAATTCTTCCAGTTCCTTTATCCTAAAACTGGTGTAACAGG

a score=12189
s chr3           157410240 172 + 160039680 AGGACCCTACATGCTTAGAAGTGGGCTTA-CTTGTATTTTCTATCCAAAGAAATATATGTGGTTACCCCAGAGACCTTCTCTACCATATCAGTAGTAGGGTTGACTGTCTGTGTGATTAAGAAATATGGCGCCTTTATTGGAGAATTTATTGACAAACTTAATGAGGACAAAA
s HiC_scaffold_1 117148301 173 + 233722169 aggacCCTACATGCTTGGAACTGGGCTTATCTTGTATTGTCTGTCCAAAGAAATATATGTGATTAGCCCAGAGACCTTCTCTACCATATCTGTAGTAGGGCTGCTTATCTATGTAATTAAAAAATATGGTGCCTCTATTGGAGAGTTTATTGATAAAATCAATGAGGTAAGaa

a score=6882
s chr3           157410384 144 + 160039680 TTTATTGACAAACTTAATGAGGACAAAACTGCTCACCTAGAAG---TAAAGCAGTTGTGCATCACACAAATCCAAGACGCAATCGACCTGGAGAAGGCACAGCAGGCACCAGGTCAGAAGCACCACTACCTCTTCGATGTTCAGAGG
s HiC_scaffold_1 117148809 145 + 233722169 tttattgttttatttac--aggaaaaaattGCCCAGCTAGAAGAGGTAAAGCAAGCTTCCATAAAACAAATCCAGGATGCTATTGAATTGGAGAAGTCCCAGCAGGCACTTGTTCAGAAGCGTCACTACCTTTTTGATGTCCAGAGG

a score=11082
s chr3           157410527 182 + 160039680 GAATAGCATTGCCCTGGCCTTGGAGGTCACTTTCCAGGAACAGCTACATAGAGCATATAAGTAGGTAAAGAATTGCCTGGACTACCATATTTTGGAACAGGGCGTGATGTGTTGCAAGGAGGAAAAGCACATGATAGCATGGGTAGAGAAGCATGTGGTGCAGAGCATTACCATACAACAGG
s HiC_scaffold_1 117152604 182 + 233722169 GAATAATATTGCTATGGCCTTGGAGGTTACTTACCGGGAACGGCTGCATAGAGTATATAAAGAAGTAAAGAATCGCCTGGACTACCATATTTCTGTGCAGAATATGATGCAGCGAAAGGAACAAGAACACATGATAGGCTGGGTGGAGAAGCAAGTGGTGCAGAGCATCTCTGCACAGCAGG

a score=18274
s chr3           157410694 403 + 160039680 TTACCATACAACAGGAAAAGGAGACCATTGCCAAGTGCATTGAAGATCTAAAGCTGCTTGCAAAGAAGGCTCAAGCTCAGCCAGTTATGTGAATGTGTCTGTCTCAATTGTGATAGCCAGAGAGAGTTAACTTAAATGGGAACTAGTCTATGTGAAGAACTCTTTCTGTATGGATGTTT--TGAAATTACAGTGTACCTTTCCTAAGAAATGA------TCAAGGTCCATTTAGT--GGCTTAACTCTATTGGCCAGTGAGGTATTTCTGATCCTTGCTCTGTATCCAGAGTTGTC---TGATAATATTTGAATAAGCAATTTG------CAGCAGCTCGCTGCCCAACTAAAA-TTACCAAGTTATATTTCAAACTTATAATTAGTTAAAAGGTCTTGCAATAAA--ATGTTTGAAACAGcctt
s HiC_scaffold_1 117153779 424 + 233722169 TTTCCTTACCACAGGAGAAGGAGACAATTGCCAAGTGTATTGCAGATCTAAAGCTGCTTGCAAAGAAGGCTCAAGCACAGCCCATTATGTAAATGTATCTATCCCAGTTGAGACAGCCAGAAACAGTTGAC-TAAATGGAAACTAGTCTGTATAACAAAACCTTCCCATATTGTTGTATACTAAAATTACAGTTTTacttttcctaaaaatgaaaagCTTGGGATTTCATTAAGTGAGACCTAACTATGTTGGTCAGTCAGATGTTTCTCATCCTTACTTTGCATTTTGAGTTGTTCTgtgatcatttttaaataaacactttgtttttattaaaacttatTACCTGACTAAAGTTTACCAAGTTCCAGGTTAAATTTGTAATTAGTTCTATGATCTTGCAATAAAGGACAATTGAAACAGTGTT

a score=12555
s chr3           157422558 373 + 160039680 aaataaaaTAAAATGTTTGAAACAGAAAAAAA--AAAGAAAACAAGTAATCTTTCTATTTGTGAT--TTTAGTTCTTCATATTGGGTTCTTTTCTACCATCTGTTGCATAATCTACTTTTGTG-TGAATAAAATTTCTTTAAAT-GAAAGTTTATCCCATCCTACTTGTGTCTGAAATTAATTAAGATTGACTAGGAAACACTCA-------------------------------------AGGAAATATTTGAAACA--------------------CCATTTTGGGAAGAAATCCACACAAATG--TAAATTGTTGTCATTCAAAATTGCTTTATTTTAAAATTTCTAATGTGGTAGCTATATGTAAATAAATCAAGAACTGAGGAAATTTCCTTGGG--GAAAGAGGTTACCTTGTTAGTTAAA--GATAAAATGAAT
s HiC_scaffold_1 144650332 439 + 233722169 AAATGCAAGCaagtttcaaaaaccaaaacaagttaataaaaaaaattaatccttCTGTTCAAAATGCTATAATTCTTCATTTTGGGTTCTTTTCAACCAGCTGTTGCATGCTCTACTTTTGTGATAAttaacatttctttaaacagAAAAGATGTCACATTctatttacatctaaaattaattaaaa---attaggaAGCATTTAGAAAAAAGATCTAAGCAAATGACTTCAAAGGCTttctataaaatatgtaaaacacaaTCACTGAAAAATCTCCTCCATTTCGGAAAGAAATACACCAAAATGCCCAAATTATTGCCATTCAtaatagctttatttaaaaatttgtactgCTGTGGTTATGCATAAACAGCCCCTGAATTATGGATGATTTCCTGGGAAAAAAGAGGTCAGCATGCTagctaaaatgaataaataaat

a score=62607
s chr3           157424211 3649 + 160039680 [encoded data, 4248 characters]
s HiC_scaffold_1 144652933 3984 + 233722169 [encoded data, 4248 characters]

a score=43408
s chr3           157427947 3865 + 160039680 [encoded data, 4250 characters]
s HiC_scaffold_1 144658295 3864 + 233722169 [encoded data, 4250 characters]

a score=8959
s chr3           157433837 603 + 160039680 cagaaggaaggccatgagaagaca-cagcggccacctacaagccta---------------aagaaatc----cctcccctggcatctgcctggaccttgaatctcacacatggagcaaa---gcttttgttgtttaagccatcctgtgtatagtactttattatggaagtcTGGGCTGAATGTGATAGAACCCAAATTAAAGATTAAATCTTAAATCTACCAAATAACTTAACAATATAATTTACAGTTCTTATCCTCACTTGATTCCATATACAGCATAACAAAATCACAAAGATGAGAGTCTTGCTAGAGTAAGGTCCTAGCAGATTCTGCCAT---------TCCAAAGCCTGACAGTCCATCTCTCTTGATGCATCAA--TATCACTGAGTGGCATTGCTCTGTTTAAATAAATCACTGAAATGCTTCATGGGAACTCTCTGCCTTCAAA--TTGGCTTAATGTGTCACATTG----CTTTCATGGTGCCAATGTCATCAT-AAAATAATAAAGCACACCAGGGTCCCAAGA--CAGACAAGACAGACTCATTCA-----CCTCACCCTGAATCTGAGGAATCTTTAGTTGC--TGACTGGGTTCTAGTAAT-GTTG--------ATATTCACCTTTAGACCAGGGTGCCACATGTG
s HiC_scaffold_1 144663512 649 + 233722169 CAGAGGAAAAGCCATGTAGGGACAGAAGCAGCCATCAGTAATATTATAAAAGAGGTCTTACAAGAAATCAAAACCTGACTGAGCCCCAATCTTTGGCTTTCAACCCCCAAACTGAGAAAacatatttctgttatttaagaCATGCAGACTGTGATATTTCACTATGGCAGTTTAGGCTGACTAATGCAGAGCCAAACATAAAGATGAGACCCAAAACCTACCAAATAATTAAACCACATCATTGGCAGTTCTTACACTGATTGAATTTCATATATGGTGTGATTGCATTCCAGAAACATGGATC---CATAAGTAAAGTCAGATCACATCCAGTCTTCTCTTTGTGTCCTGAAATAGATAACCGTTCTATACTTGCACACTtagttattattta-----aatttgCCATTTCAATATATCACCAAAGTGAATTATGGAAAAAATTTTACCTCAGAATTGGGCTTAATTTATCATGTTGTTCATTTTCATGATCCTGGTGTAATGATGAAGACAATA----ACAATAAACTTCCCAGAATTTTATGAGCCATAttggttcatttttctttattctaggTATAATGAAATCATAGCTACAGAGAAAAAGTTCTGGTAGCAGTTGTACCATAAATAATC-TTTTTTGACCTGGATGTCTCATGTG

a score=18644
s chr3           157434656 693 + 160039680 TCTTTTACATTGT-TGTTCTGTGAAAA----CCATCTTCTGTAAAGTCAAATGCATGGTTTGAG----GTTATCAAACAGGCCTTGAGGAGGGCAGCCAAGGATCCCAAGAGAATATATTTGGAGATGTCATTAAATGGACTGAATGAGGCAGAAATATGTCTAAATGTAAGTTCAAGTTTGACACCTCCGTGCAGACATTGGTGGTTGTCTTTAGTCAGTTGTCCTTTGTCACGGGTAGCACTTTAGTTGTCCTACTTGACAAG-----------------------------CTACTGCTGAGT--------GCTCTGCCTGCCACAAGACTGAAG-GACCAGAGAAAATGGGTACAGACTGGAACTACAAGAGTACTGTAAGTTGTGTTTAGCAATACTTTGGAACATGAAATTGTAAGTGGTCCCATTAGACCAACTATACTTTTGCTATTTTTTCCAGTAGTTTTAAGCACAGAGTTGAGAATTTAAAAAATACCCATTCTACATAATATTCCATTTAAAACAC---CTTGGAAATAATCTGTAGTAATACATTTCTAACAAAATGTCACTCTCCAATGAAGCCGGACCACCTAGCA------------AAATACAATATCTTGGCATGATGTTTTAGTGTTTTTCTTGAAATAAATGGTTTTGAAAGCAAGAAACTGACATGCCCTACCCACACACAACCCT------ACAAAACTCTGTGAGTGTCA--CCTAGTCA-TAACAAAATAGGTGTGAGG
s HiC_scaffold_1 144666774 740 + 233722169 tcttttttatcttctgttCATTGAAAATACACTCTCTCTTATAGATCCAAATA----GTTTGGGCTGTATTATCAT-TGAGCCTTGAGTAGGAGAGCTAACTAGCCCCAGAGAATAAATTGGTAGACATCATTAATTAGAGAGTATAAAACAGAAGCATCTTAAAGTATAAGTTCATGTATTACATTCCTAGACAGAA--TGCGGACTGT------------GTGCTTTctcaaatgtaacattttaattgGCCTACCTGATAGAAGGTTAAATAAAATGTACACTAAATCTCATTACTACTCAGTCGTCAAATATCCTCCTTGCAACATGACTAAAACTAGCAGAATGAGTGGCTACAACCTAGAATTATGAGAGAACAAAAAGTTGTCTTTTGCAACACATGGCAACACAGAATTTTGAGTTATCCCATTAGACCAGCTATATTCTTGCTGTTTTATCCAGGACTTTTAAGAACAGAGATgtgtatttgaaaaat--tttttccatataaTAATCCACTGAAAATGCCCTCCTGGAAATCATTTGTGATAATATAATTCTAATATAATGGCACTCTTGAAGAAAACTCAACAacgtggcaaaaaaaaaaaacaaatactaccTCTTAGTACAATATTTGCAGATTTTTCTAGCATGAATTGGTTTCAAAAATAAG--ACTGTTTTCCTTTA-TCACACACCTCCTTCccaaaacaaaactgtgtaaaGGACCATTCTACTCATTAAAAAGAtaggcatgggg

a score=4322
s chr3           157435527 181 + 160039680 TGTGCAGCTGGAATTACTTCTGACAATAAATATTTACCGAGCCTCTACTTTGTGTCACTAAGGACATTCCATCA-----------------CCTTTAACAACTCACTGTTGAGTAAGGGAGAGGGTCAGTAATAAAGAGGGGGCAGTTGCAACCAAGGCAGCAAGGTGGGGAAAAGATAAATCCAGGAAATATGCAGG
s HiC_scaffold_1 144667840 186 + 233722169 TGTACTACTGGAATTTCTTCTGCCAACAAATACTTACTGAGCCTGTAATTTATGGCACTGGTGATAGCACAACGAAAAAAGTATCTTCTGCTCTTCAGAAACTCATTTTCTAGTGGAAGAGAGGAtaggtaaacaaaa------------aaaaattgcagtgtGGTGTGGTAAGCacaaaaatggacaaaatacAAG

a score=45043
s chr3           157435629 2129 + 160039680 AGAGGGTCAGTAATAAAGAGGGGGCAGTTGCAACC--AAGGCAGCAAGGTGGGGAAAA---GATAAATCCAGGAAATATGCAGGACATGATTTGACAGGGCTTTGTAACTACCTTTTATAGTAAATGAGGTT----GGGTCAAGGATGAGAGTCATGTTTCCAGCATAGGAA------CTAAAAATATCA------GCTGAGCAGACAAAGAATGTGGGATCATGGGAGATGGGCTTCGACACCAGAGTTGCAGTTGGACTTTCA---------AGGAGAACAAGGACAACCTGACTAAGTGCAGTAAGTATATATAGGTAAGG-GGCAGGAGTTTGAAAGAATTTTTATGGAATGATTTCTCTGTCCTCTTAAAAGTCACAATGAAAATCATCTTTTACAAAGCAGGGAAACAAGAAGTATGCAGGTTTGGG---AGGAGAGAAACTTTGAAAAGGGTGA---------------------------------------------TTATAAGAATGAAGA-----------------------------AGAGTGATGTCTTGATCAGGTTTTCTATTGCTGTG-TTTTGTTTTTAATACTCAGCACCTAGGAAGAGTTGAGGGAAAGAAAATGTCATTGAACTGATGGAAAGCTGAAGGTTTCCCACCT------GTCTGGAGGGTTTGGAAAACCAAACAGGA--TTTGAGGAAAATAGACAACATCAAATTATTTGGGAGCAGGAAAGAACCACAGGAGGG-GCTGATAGAGGGAAGAAAAGGAGAAAAGAGATTAGA----------CCCAAAGATTTTAGGG-CAGATCTCTGGACAGTTACAGAG-GGAGACACAAGGGTGGGAAGAGAAGGGTCCCTGTTGTCAGAG-TTAACATGTCAT-AATGGCACAGTTTAAGGTGATGGAGGGAGAGATGA-------AGGGAGAGAGAGAGAGGAAGACCTCCTCTAGGGAGCTGAA----CAATAAGGTAAGGATTCCTGCACTG----AGGAAACAAAGGTGCCCAGGCTATGAAGACACACTGGCTTGTCTGTATGTAGTTACTCAGTAGAGAAGATGAGTGAGATTGTGTAGATGATGCTGACTTCCACA--GAGGATGAGAGAAATCAGACAGCTGACC----------CTGACAACATGGAGTGGAAAATGGA-GGAACCTCAGTGAGCAGACTTTCTATAAGGAATGAA-AGCCATGACCTGGAATGAGAACTGGAA-AGCTGAGAATGGCCGTG-GATGCAAACCTGGAG--------------------------------CCCTGCATTCCATGGATGCGTCTTACTCCCTTTCAGCAAGAGGATTGCCTTCTACAGGTATTATTAAAATTTAATCATCATTTTTGAACTGA-----GCTTATTGTGTTTGTGGATAATAAATCTCTTTTCCTTTCTCCTTTC-AAAGCTAGCTGTGTTCTCGTGGTATGAATTTCTGGTCCCTTACACTACAGCTGCTTCGCATCAATCTTTCATGAACACCAACAAAAAAAAAAGTGCATGTGCCAACAGAAGGTGAGTCCCACACTGAGCCCTCCACCCAGGGCTGGTCACCCTGATGTGTAATCAATCAACAGGAAAGGTGTGCCTTTTGCAAAGTTCCTCAAAGAGGTCACTTTCCAAGGTGTGATCAATCTCCCCCATGCTGATCCTGTTACAGCGATCACCAGTCCACCCCTCACAGCTTGTTCTCCAGGGAG---CAAAGATGTGTCTGAGAATGTCCAGGGCAGTGTGTCTCATCAGGTTGGATTACCTTACAGCAAAGCTCACTGGAAATTCACCTCATAAGTAAAAA-CAATCAGTGATTTTTTTTTATAACACCA-CAGAAAGTGTTCTGTTTGGGGATGG-AATTATGCTGAACAATTATAAATGACCCGTAGCAGTCACACTCCCCATCAAC--GAGTCAGCAATTCTTTCTTTTGACAT-AGAAGGCAGAGAAAATCGTCCATGCTCTGTGCCCCAGAAAGT-TCTTGCTGGG--AAGTAAGTAGTAGTTGTTCTCATGACCTGTGAAGGAGATAGGAAGA--AAAGTAGATTTTACTGAGTACCCATTACATGTCACCCCAGTAGATCATCCGTGCTTTCTTCATTAAGCCTCAGTCTCTCAG-------CTCCCTCTGGAAAGCAACCCCTGACTACTTCCCAAGTCAGAGAATACTGGG--AAACTGCAtgt-cagtcttcatgggccacagggaggctcaaggatggagataaacattaatctgcatgtggctgtaatggttttctgcataagattcattttaatGTTTGA
s HiC_scaffold_1 144668454 2209 + 233722169 AAATGGATGGTTATAAAAAGGATATTGCAGCAACCCTGTGGCAATGGGATGAAGAGAAAGCGATAAATTACAGAGATATTCAGGGAGTAA------GGGACT----GATTGCCCATTGTGAAAAAGGAAGAGTCAAGAGTCAAAGATGAGGGTCAAGTTTCTGCCACAGAAAAAACAACTGCATACATCATGGAATGATGGG-AGGGGAAGAGAATGGAATCATGGGAGACAAACCCTAA-----GATTTTCAGTTCCACTTTCGCTGCAAGATATGAAAACAAGGAGGACTTGGTTAAATGTCATAAGTTTGTA--GTTAAATTGGCAAGACTGTGAGATGACTTCAAgctaatgatttctttttttatatgaaAT---CAGAGCCAGTGATCTACTGAGAAGCAAAAGGATAGAAAGTAGGGAGGtctgaagaaagaggagaaattttGGATTAGGAGAATGGGGGGATGGCTTTGCATGAGGAATATGAGGCAGTATTGGCCCTTTTAAGTCTGGAGATCATGAAAAATTAACTGGCAGtaatgataacagtaatagc---attagttttcaaagttgtgtgattttattttt--tagtagtaACTCTGGCTAACGAGGGGGCAAGAAAATGAGCTCAGATTGAGCTCAACTTGAGGATTTTCCACAGAGCCAAgtcagaag-------aaaataagacaagagACTTGAGGGTAACAAT--ACTtc---ctgtttga-agcaggaagagaagacaggagagagctgACAGAAGAAAAGCACAAAGGTCAGAGATTAGAGATTAGAGGTCCTGAGAACTTCAGGGACAAATCT---GATAATCACAGGGAGGGGATGTGGAGACAAGAAAGTAATGGGC-------TcagagattaaaatattttcaatttcagagcTGAAAC-----AAGCAAGTGATGACATCCCCAGGGTTAGTAAAAGCAAAGGCCCCT------GAAGCTGAAGCCGCAAAGGCACAGAGATGAATGTACTGTCCTGGTACACAAAGGCTCTCAGGT-----AGAGGCAGGGG-----------------ACTCGGATGACAGGAAGGGA-----TATGAAGCCAGTGACAATTTCTGCATGGAGAGTGAGAGGAAATCACCAGCTATCCGATAATGAAGCTCACAATTTCAAG---AAAATGGACTGAGCcttaataaacatattttatatgaaagTGGAACAGCAATGATctacaataaaaactgaaagagcaaaaaCTACCCATGCAACACTAACCTGAAGATCTGGCAGGatcagagaggagagggaagaggccCTTTCTTCCATGGACACATCTGACTCCTTCTCAGCAAGAGGACCACTCTCCATGAAT-TTATTAAGATTTAATCATCACTTTGAAGCAGGCCTATGATCATTATTTCTGTGGACAATgaatccctttctctctcttttttccaaaAGCAGCTGTGCTTTCA------------ATGGGACCCTCCTCTCCAGCTGATGCACATCAATCTTGCATGAACTTTCACAAAAAAA---GTGCATGTGCCAGCAGAAGGTGAGGACCACACTGAGTCCCCCATCCAGGGATGGTCACCCTGATGTGTAATCAATCAGCAAGAAAGGTGTGCCTTTTGCAAAGATCTTCCATGAGGTCACTTTCCTAGGTGTGATCAATCTCCCCCATGCTGATCATGTTGCAGCGATTACCACTCTA-CTCTAACAGCCTCTCctccagggagaaacaaaacCATGTCAGTGAGTCTTGAGTGTGGTGTGTCTTGTCAGGTCAAATTACCTTAGAACATAACTCACTGTAAATTCACCTCATAAGTAAAAAGCAACTGGAGA-----TTTCAAAACACCATCAAGAAGCATTCTGTTTGGGGGTGGAAATTACATTGTGCAATTACAAATGATCCATGCCAGTGACCCTCAGCCTCAGTGAGAGTGAGCATTTCTTTAGTGCAGcacaaaaagggggaaaaagtcTTCCATGCTTTATGGCCTGAAAAGGATCCTGCAGGACTAAGGAAGGAGTGTttgtttttttcaactttaaagGCTACAGGAAAGACAAACTGGCATTTAATGAGTAGCTAATGCATGT----------------------TCTCTTCTATAAG-----GTATTTCAGGAGAAACACCTCCCTTGGATGCCTTCCCTGACTACTTTCCAAATCAAATGGCAAGGGTTCATACTTTATATGCAAGCTTGACCAGCACATGGGAGGTGTGTGTGTTTGGTTCAACATTATTCTGAGTGTGTTTAGAAAG------TACTGAAGAATGAGATTAATATTTGA

a score=60949
s chr3           157442773 3651 + 160039680 TTCTACTCTGGCTAGCTTTTCTC-TAATGTCCACTCATAGAAATATAAGACTTGTCAGAAAATCTGCAGTTACTTCCACAACTCACTGGAAATCAGCACTGTTTGAATTCCTAATCCTTCTGGCACACCCTGAAGAGCCGAATCTAAAGTTTACTTCTTGGTGGCTAATCCTTTATACTTGTTTAGTGATTGAACTTAT----GATGTCAAAAGAGCTTTAATTGATTGCTATTAATAGCAGAGGTGATTAGAATCTATTCCA-CTCCCAAGCACACAAGTTTTTCTAATTACATTTTAAGAGTGAACC-ATTGATGATTCTATTAAGTTTGGTCTTTATATATATAAAgagtcacatcatacgcatatttaaattgcatctaattaacttcagtcccctggagaaagacagggagagagaagttaaatactggaggtgattccactcaccagcacacccaagaagcac-atcctaaattaagtgtgaaaacaagagttatagtgtttcttcagtctcaagtctcatgggcatctc-aaaaatgagtgtgatactaatgttcaaatatagcattttcttcacataacattgttcccatatgtaaggcgagcacctcatcaaaactcagggagcagaagcagtaccatgtggctatcttgaacataaacccagaagctggttctattgaaaagacctgtgtccataactaaaaagacatcttcttcatatagtcccaaaggtgattctgttctatgtaacatttgccttataatctggctatcagccttaaccttggtggaaactacaattttaTCT-TGCTGCCAAATGGAG------CCAAGGTCTTTGAACCTTATTTCTCTGACCCAG---GGTAGCAGATGCTGCCTGTGACCTCCCATATGTGGTTTCCA--------------TTCACATACCTCCT-----------ATCAGCATCTGTTGTTCT------------------------AACACGGGCT-TAAGCAT---TGGGGTTGGCCAGATGTACAGGGGAATTAATGAACTGCAGAGGCACCTATAACAAGAACCTGCAGGACAGAACAGATGAGAGGCTAATTCTGGGGTGCATGCTTCACCTGTTCCTACAGCTTCTCAACTGCAG--------AGAGTGGTAACTTGCTTGATGGTGCTGGCTTTTATACACTGGTTTTGTCTCATGCC-----TTTTCCA-----TCTCCTAAAAAAGTTTATAATTG--CTCGAGTCCTTGACT-CTGTAGGAAGTTACTTCTAGAAGAATCTCAACTGTGGTGCACAGAACCACCAGCCATAGCATCAAGTTAAAAA-----------------------------------------------CAGGTAC---------------------------------------------AATGAAAGTAAGAATGATGTGATACCAGTGCCCAATCACATATC-----ACACATG-----TGAAAGAACATGTATGCTGGTGATAATCTAAGGTATGTACAACCTCTGTAACAACCTCTAGCCCTTTGCTTGTAACAATTTTAAACATG--GTAGTGTAACAAAATGTGAGATTAACCACATGAAATTAGTTCTTAAGTTG-------TTATCTGGTATCACCTACTCCTGGAAAGAGATGGTGAGAAGGTTCCTTGGCTGTTTTCTGTACCAAAGAAGACAT----GTCTTTCTACAAGATCATGACTGTCTACT---CTCT------TCAAAACATTTAAAAATTTGCATTTCAAATTTGTTGGTCCATAG-GTAGAGTATGAA-------TAGTGAA----TAACACCTGAATTAATGCCAGTCATGGGCTTAGAGTCTCCCTTGGAGTTAAGAAATTTAAATTTGATGCACACACTCACCTTAACCAAGTAGAC-AAAACATCAAAATATTTAATGAGCCAAATTAATTACTGTTAAATTTCTCAGTGAGAACAATCCATATTTCCATGAAGTTTCACTCATGGGAAGCTA--TGCATGTGGAGA-AGCTTCCTGGAATAAAG-CTTGAGTGTAGATGACTGGG---AAACACACAGGCTACTGTTAAATTTCAGGATAAACAGATCTCTAACAGTGGTCTATGGTGTTGTTGAATGTTATTCAAGAGGCTGCATTTTgccaggcgtggtggtgcatgcctttaattccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagctccaggacagccagggctatacaggaaaaccctgtctcaaaaaacaaaacaaaacaacaacaacaacaacaaAAAGAGGCTGCATTTTTATTGCAAAGGATAAAGTGTTTAAGGATGTGTGGTACTCAATAGTGCAT--------------TCTAAAGTTGTCATTTCTTGCAAAATTTCCCATGGAATTTTACAGTGCT-----------CAGATGGGAGGATTGACTTTAACTAGCA------GCTATTCAGTGTTATTCCTTAAAAGGATGTCCAGAAGCAAACACACCATTGTCTGGA----------------------GTTTACCTATTATATTTTAGAAGCCTCACTCCCTGTCGATTGAGGAGGGGTCTTCCTTCACCTTTTCTGCTG--TGAAGACCTGTGTGACAGTTGACATGGAGCATTCTTGATAGCCTAAGGATCCCAGATGACTGACTCTAGACTAAATTTCA-TTTTCCAACAATGACATCTGAGCTTCTAGCTTGTTCTTTGGCTAGAA-CTGAAAGCATTCTACACAACGGGTCATGTTAGGCTTGAGGCTGAGTCAGCCTGTTGACTGTATACCTCTAAATGCTGTTTAACACTTAT-TGAGTAATTGCTAATAACT---------------TTACTTTAAAAATATGATCATATGCTTCTTGTATTTGAGATAAATAATA------GTAGTCAGACAACATGGATTTATC-------------------TTTTTAGTAAATAATTATTGTGCATTCAGATTAAAATGGCTCAAAAGTGATCTGCAGCATTTATTTTTTTTTTTTAtttttttttccattttttattaggtatttaactcatttacatttccaatgctataccaaaagtcccccaaatccacccacccccactcccctgcccacccactccccctttttggccctggtattTATAATACATGACATGATCAGTCTCATCAAAATAAAAAAAACAGTCTCCAAGCATTTTACAATGTAAAAGTATTCATCAGAGGCGACATGACCAGTCTCAT-TAAACACAGAAAGCAATCTCCAAGTGTGATGCACCGTAAAAGAAAATACAAAGGAAAAGATACAGAACAGGTTTC--------------TTCTCCAACATTTATTC--TTCAGGAACAGGTCTGATTCTT---AGAACAGCCCTTGCAGACCAGACTGCTCGTTACAGTGCTGTCTTTGAGAGCTAGGCCTCTTTGCTTCTATCATAATGAGCTCTACAGAGAGAAAGCCGAGGAAAAGagaggaacagaggaacagaggaacagaAGCGGGGTGTTCAAGAAGGGTGCCTTATCA--GAACCAACAACACAAAAGCAGTCATAGCAAGGT-GAATATTTTAGTCTTTGT-GTTTTCAAGACAGCATATGAAGAACTTGGCAAAAAAAATATTTAAAACCTGTTCATTTTCCTTATAATCCTAAGTAGAGTCTTCAGG-ATTGCAGAGGCACATCCACACTGAGCTACTGCAGCCACATGGACAGATGTGTGGGGATCTATTGATTGCTCATTATTATGAAGTACTGACAGG-AGGTTGCGAGGGAAATCAAGT------TTTTTTTTAAATTGGCATTGAATAAAAAAAGTATG-AGGTACCTTTTGGTTTTA-GATGAATATATTTCACATAAGATGTCCTGAACATTTCTGGCCTTAacacacacacacacacacacacaca
s HiC_scaffold_1 144675572 3386 + 233722169 TTCAACTCTG------TTTTCTCATAATGCCTGCTCATGAAAATA--AGATCAGGATTAAGGTCCACAGCCACTTCCAGACCTTACTATGAAACAGCACTGTTCGAATTCCTAAAACTTTTGCTTTATCCTGAAAAGCAGAGTCTGCAGTCTACTTTCTGGTGGCAAATTCTTTACATCAATCAAGTAACTGAACTTGCATCAACTATTAAAAAAGCTTTAATTGATTTCTTTAAAAGGCAGGG-------TAATCTATTCCATTTCCCAAGCATA-AACTCTTTCCAGTCACACCCAAAGAGTTCGCCTATTGATGATTCTAT---GTTAGGTCTTTGTAAACAAATACAGTCACATCATATGCATATTTAAGCTGCATGTAATTAACTTCAGTCcccaggagaa--------agagagaagttaaacatTGCAGGTAATTCTACACACCA----ACTCAAGAAGCACAAGCCTAAATTAAGTGTGAAAATAAGAAGTATGGTGTTTCCTC-GACTTAGGTCTCGTGGGCCTCTCAAAAAATGAGTGTGATTCCACTGTTTAAAGATAGCATTTTTTTCATACAACACTACTCCCACATGCAAGCCAATCACCTCATATGATCCCCAACTATAGAAACAGTA--------------TGGAAAAAAGCCTGGAAGATGATTCCATTAAGAATATATATGTCAGTCTCCAACATGGGATCTCCCTAATGTATTTCCAAAGGTAGTTTTGCTCTATGTAGCA-TTGCTTTATAAT----CCATAAAACTTAATCTCAGTGTAAAACATTGTTTTTCATCTGCTGCCAAACTGAAACTGATCCAAGATCTTTGAACCTTATCTCCCTAAACCAGCATGGTCACAGATGCTTTCCATATCTTCT--TATGTGCTCTCCACGGTCACCACCACGTCTGCACACGTCCTCAACCCCAGCCACCAGCCTCTGCAGCTCTGCCTGGGAGCTGTCTCTGGTCCCCACCACCAGCTCTACTCATGCATGGAGCCCGCTAGCAGTACAGGAAAACTGAAGAGCTCCAGAAGCATCTATAATGGTGACTGATGGGAGGCAGCAGGCGAGAGGCTCACTCTGAGATGTGTATCTCACATGGCCCCCAAGTTCCCAAACTTAGGAGTAATCCAGAGTGGTAACTTGCTTGATGAAG-------TCATGTATTGGGTTTATCTCCTTCCAGGTGTTTCTTAAAGTTTCACCTGAGAAA----CTAATTGCACTTGAATCCTTGTCTAATGAGTAAGGCTACTTGTAGGAGAATCCAATTTATAACACACAGAATCTTTGCCCATAACATCagactaaagagaaagaaaaactggggatttagctcaactgttcaagtgtctgcctggcaagcacaagattgtgagtttgatccccagtaccaaaaagaagaatAATCAAAATGAAAGT-TGGATGAAATGTTTCTAGCTCCTGAAC-CATATCATCCTACTCATGCAGCTTGAGTGAACA--------------AGATTCAGTTTTACATActctttgtaatgttttctaaacat----ttataaatatagcaAACATGCAGCAGTGGCTCAAAATTTGACA-GAACCAAATGAAATCAACTCCTATGTGGAGCCCACTGACATGGATCCAC------------ACAAAAAGTCTGGAGGTCACTTGACTGTTTTCTTTGCCCAGGGAGACACTTGGATCATTCAGCAAGACCATTGCTATCTATTTGGCTCCTTGTAgtcaaaagctttaaaaa-ttacatttcaaaagTGTTGGTCTGTGGTATTGAGTTTGAATTACTGCTGGTAAAATTCTATAGCATGAATTA-----AACCATACGCTTAGAGCTTTGCTTGAGGTCAGG------AAATTTGATGCATATTTTTACATAATCCAAGTagacaaaaatagtaaaatattgaaGGAGATAAAAC-ACTAATGT--GATTCCTACACAAGAAAAATTCAGGATTATACAAAATTTCACCCTCAACAAGATAGGTGCACTCAGAGCTATCTTCCTAGAATAAGGTCTCTGGCAGAAATGGTGGAGCAAAAATACATTGAAGACT-TACAATTTTAGGGCACACAGAAATATA------TTCTATAATATTGCTAAATATTAT---AGAGACTATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTTACtctaaaggaaaaatgatttaagAA-GTGTATTTCTGACTGACGCATTTAGCCATATATTCTCTAAAGTCATGTTTTGATGCAAAATTTGCTGCAGAAGTTTACGATAGCCTCTATTTTAACAGTTgtggcaatgaaattgaagtagtATTCATTGCCTTTCATTGTTCTT-------------------AGCAAATATCTCATTTACTGGACACCCTGGGTACAGTCGCGAACATCTGTGTACTATATTCACTGAGAaccatttccttttgtt----------tcttgccTTGCATCTCCTCCAGGCCACAACTCTGCACACCAGTTGACAAAGAATATT-TCAGCAGCCTCCAGACCCCAAATT-CTGACTCCGGAATGTATTGTATTTTTCCATCAAAGACACTGGGGCCTCTAGCTTGTTCCCTGGCTGGGATCTGAGACAAATTCACATGCAGGGATGTCTTAGGCTTAAGGCAGA-TCAGCCTATTGAGT-------CCTAAACTGTATCACCCACCTACACAAGCAActgttaa-aactaaaaaaaaaaaaaaaaaaaaaaaaaaatgaaatcatctgCTTTGTGCATTTTAGGAGAATAATAAACAACAGAGTCGATCTACATGGATTTTACATAGACtcaacctttttgttttttaggaaacaattattttaagttCAGAGTAATATGATTCAAAA-CAATCTGCAATATTCACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGTGGAAACATGACTGGTCTCATCtaaatgcagaaaataatttcC---------------TAAGAGTATAAACACAAGGAAAGACACGAGA---GCTTCTtaagtattttcctttctttaacaTTTCACCCATGCAGGATTGTACCTCGTTTCTTTGGGAACAATCCTT--------TGGTGCTTATTACTGTGCTTTCTTTGACAGGCAGAGCTCCAGATTTCTGTTATAATGag-----caaaaagaaagcagagggagagggagaga-----gaccagAGGA-----------TTTTACTGGAAGGATATCTTGTTGTTAAACCAATATAGCAAAAGCAGCCCCAGCACGATAGATTACATTAAGTTTCATCATTTTCAAAACAACATTTGAAGAATATGCC---TGTCTTCTTTAAAAGCTGTTCTTTCTGCCTATAATCCTA-----AATCGTCAGATACTGTA-AGGCATAGTCACATTTCATTACTACAACCACCCAGGCAGCTGTATAGAAATTTATCAGTTG---ATGGTTTTGAAGCCCTGACAGACAGTTTTCAAAGGAaaccaagtaaaaaaaaaatactaagccTGAATT------AAGAGGTATGCAGATAACTCTCATTTTTATGCTGGGTAAGTGGGAACTCAAACCTCCtg------------ctagacacacacacacacacatacacaca

a score=84702
s chr3           157447607 3748 + 160039680 [encoded data, 4304 characters]
s HiC_scaffold_1 144679465 4096 + 233722169 [encoded data, 4304 characters]

a score=58854
s chr3           157464637 3276 + 160039680 GGCTGATTGGCAGATACTCCCCAATTTGGATATGTCGAGAAA-ACTCAGAGTTCTTT-ACACAATATAGAGTCTT--------------------------------------------------CCAGGATTTTGGTATCTGTCCAG----TACTAGTCTGTGACAGCATGAACTGGAACAAGTACTACCAAACAATGAAGTCTCCAGGTCTTCTCTGAGGCCC---CCTAC-ATAAAGCTAAGATCC-TTACTGAACACACACATGCAGGTGCACCTGGAGGCCTTTGGGAAGGGTGTGTAGAGTCACTGTATTTTTCAAAAG-----GCTGTCTGCACATGAAGCCACTGACAGTACT-----TGTGGTTCCTCCAAAATGGG--ATGTTACAAATAgaaa-------------caaagactacaagctat-------------ctcatcaactaagaacttggtatccattatacattgaaatacaattt-gtatctattgcttaaaaggtt---taataggacatattgaggttcatctcacctgtgctttttctctatttttaacatgttacctaaaaatgtaaaaatgggcttgagtggcttgtactGCTCACTGAGAACAGCCATGAGGACACATGACCTTGTCAGTGTTCTCACTGTGTGGTAACCACCCCATGTGCTGCACTCCTGCCGTTCTCTGCTTGTGATTCCATAAAGACTTTCTCAGAAGATCTTCCAGTTATCTCTCTACACGTCAGTCTCCACTTCGA------------------GGCCTTA-CCTTGTCAACCTGTCCCATCTGGACCTGG---AGTG-AGTGCACCTGGCAGATGTCTGTGAACAGCTAACCCCTCTGCTCTACTT-GCCCAGGGCCACAAGA-----TGATGGATTGCACAGCCCAGAATCATGCAGGCCACTTGAGGCCTGCCCTGATGTGTTGTCTATGACAACCACAG--CTAGGCCCTTTCTCTAAAGATTAGCATAAGAAACAGATTGGAGTAAAACTCG--TCAGTCCAATTTACCACTCATTAGCAGGTTT-ATGAAGACCAGTTGTGAAAGAGATTGAAACACAAAGCTAATGTGACATTGTGAATTATCTCA--TTGACAGTTTTCTGTGCTGTGATTCACTCTCATTAGGAAAGGTAAGCAGGGTCCGGG-TTATTACTGCACCATGTCTCTCCTTCT-------GCTGCAGCACTTGTGGGTACCAAAAACTCACAATGATGCTGCACTTTTATTCCTGGCAGTGAAGGTCCTACTTCCATTCTGTGTCCCTGATCCATGATTTAGCAGTGCTTGATTCGAACCACAC---ATCCAC---------ACTGATCTGGTGTCATTGGTTCTCTCCAAAAGCATTTGTTT-TATAACAACATGGTTACATTAAGGCTCCTTTATCCTAATAAAGTACTGTTCTTCATAGTGTACTTTGCTCATGCTATGTACCAGTTCCTGCGATGCCACCAGCCCCAAGCAGGACTATTTGGTCACATCCAAGAAGCCCTGAGTTATGTGTTACCATAGTGACATAACTTGTATATACCaaaaaaaaaaaaaaacacaaaaaaacaaaaacacaaaaaacaaaaaaaaaCCTTTCaaatgtatttagaaatttgcaagcccatgctgtctatagttacatat----------tttgagaacatgagagagaaaagag------acatatttctttctgtctcatctaagtctggagaaggttctatacagtgtccaggatcaggtcttcttgatcaagtccagaaatatacttcctgtatttcttacttttattg-------ctctgatgcaagttaatttcacatctcctaggtaagagaaaaatgaactaatgcagttatttctcatagtgctg-ggttctttggtgccttttgaggtgaaacatgatagatcttcttgcctctgcagctctccaatgccatttatttaatgttggttacatcattagtcatgtaataatgccatcattcattgcgccacctgtgaatattggcttctggtgactctctcaaagcg------tgtttcactgatgatggtcacagatgaggttttaacccagaattctgggagagagatgtatcataattcattatctgataattaaattcattgttcaaaattttat-----aaatgtaaaaacacacttt--------tcttctgatgaac---ttatgccaattttccatatttccaaagtgatctctttggatgcttgccacttttgccttccacaaaccatcagcagggaaaatatttgaagcacctatgggcaaggtgaaaggaatgaccccattaatcaaagaaatggctatcTATTGAAGAT----TGT--------------CTAGGGAGAACATGGTGGTGTCA-ACCTACCAGAC----TAGAAAATCCTCAGACAAGGTAAGGAAGGTT-----------GCCTCAGGG---------------------AGACTGTCTGTTGCCTGAT-----------------------------------------------------------GTAAAACAC-----TCACACTCATTACATTCA----------------------GCCACAGTTGTGTAATATCTGGTGCATAAG-----------CTTGGGCATGAAGCACAA---TTATGAGTTGAGTTGGACCCAAGTCTGTCTGT---AGCCAGAG-CTTGAACTTATCTCAGGGTACTTAGAAGAACCATACACATATTGTCATGGGATCCTATAAAAGAAGCAGTAAATTGGCCAGTGGGAACA--TTTTTCTCCATACCTCCATTCTGGCCTTGAATA-TGGTATACAACTCTGAGGCAATCTCATTGGAATGGCTTCCAGAGCTCTTCAGAGCATCTAGTTAT-TAGGTCAGAGA-----AGAAGATTTAAGACTACCTCAAA--AGTAACGTGGGGCTGTGACTCATAAGGTCTTGTGTTACGTCCTACCTA-------------AATGGCACTTCCAGCTATGGTC--TCTTGGTCAGGGGAAGAATAGTTAAAGGTTTTAAGGAGAtgatatgagttgtatctggactgctcctgatggaatcacacattgaaggcttaggtaccagtccagaatgccgatgagaggtgatgaatcctacatctctcttgtaggtaggcttagccaatgtcctgtgtctacggcatgcatttatgtcatgtgtttaggacacacattagaaggggatattggggactttaagacctccatcat---tcactctttttgcttcttggcaaccatgaagtagacatacctcctctcgttgacactcccaccaagatg----gctgtagctctacagacccaaactgatgaagtcaagtgactgtggaccaaaa---cttcaaagccatgaaac--aatttgtctttcctccttaaaagtcagttatgtcaggtgtgttttttttttaagtaaaagaaagctgacTAATGCAGAGGTGCCCAAAACTGTAAGGGTGTCTCTTCTGGGTTTGGATGATACTGGCTGTGATATATTACATCTGAGGATGAAAGGCTTTGAAATATCTTCAAGGGAAGTCTAATGAGAAAAC
s HiC_scaffold_1 144689814 3451 + 233722169 GGCTCAGTGGCCAGTAGACCCCAACCTGAGTATACATAGTAATAATCAAAGCTCTTTTATGAAATACAGAATCCTGAGCTCCACTTGAAACCCTGTGATGGGAATCTCAGGAATCCACAAGCTCCCCAAGAAGTCCTTATGCACCCAGACACTACCAGTTTATGA-ACCATGTAGCGGTACGAATTTAATAGAGCAGCCAAGCACCCGGATCTTT-----GGCCCGTCCCCACGACACCATTGAAATCCGTCACTGAAAA-----ATGCACACACACCTCAACTCTTTTTGGAAGTATATGCAGACTCACGGCTTTGTTTGAGAGTAGCAGCTCGCTGCCTGTGA--CTCCTGA--GTACTCCCAATGTGGTTCATCTGAACTGATTCCTGTTGAAAGTGAAACACACGATGAATTTCAGAGACTAGATACAATAAGCATGTGAACTCTTGTTAATTAATAACTGTTTACCTATTATATGTTTAAATCCCATTTTGTGTTTGTAATCTATTAGATTACATAATATGTATTACTAAAGTTAATTTTGCCTGTGCCTTTTTCCTCTTGTG-----GTTTCCTAAAATGCTAAAGCTACACATG--TGGCTTATTGCTTCCTCTTAGATCACAGTGGCTAACATCTATCCTTATTTAATGTCACACTCTTTGTTAATCACACTGTACTCTGGACTCTTACACTCCTTTGCTCAT------------ACCTTTACAAGAGACGTGT--GCTACAATATTCCATGTCAGTGTCCACTCCTACTCTGTGAGTAGTTCCAGGGCCTTAGCCTTATTTGCCTGTCTCCTTTGGACCTAGCACagtgcacagcacctgccagcTGCTCCTCAATAGCTAGTTCCTTTTCCATCCTGAGCACTGGGTCTCACGCATTGTTAATGCAATGCCCAGTCTCTAACT---CAGGCTGCTTGACTTCTGCTCTAACGTGCTATCCACAGCATCCCATGACCTAAATCCTTTCTCTAAAGATTAGCACAAGAAGCAGATCAAAATGCAGCTCAAATCAGCCCAATTTACTACTCATTAGCAGTTTTTATGAAGACTGGTTGTGGAAGAGATTGAAACTCAAAGCTAATGTGACATTTTGAATTATCTCAAGTTGTCACTTTTCCATGCTGTGCTTCACTCTCATTAGGAAAAGTAATCAAGATCCGGGCCTATTATTATACCATGTCCCTCCCTGTTATTAAAGCT-TGGCACTTGGAGGTAACCAATGCTTATGTTGATTCTGCACTTAT-----TGGCACAAAAAGTC---TATTCATTT--TTTCCCTGATTAATGTTTTGG-AGAGTTT-CCTCTTTCCACACTATTTCCTCAGCCTAACAATTAAGCACATGT-ATTAATTTTCTCCAAAAGCATGTGTTTCCATAACTTTATGGATACATTTATGC------------ATAGA------------------------------GCTA---------TCCTGGGACATCTTCAGTTTTCTCCAGAACCATCTCCTAGTATCAGGGCTTCCCTTGAATGTGTAGGACTTGAGATCAATATTTTTTATATGC------------------------------------AATATTAACAATTTCCCcttaaaatgtatttggaaattCACAAGCCCAT-TTGTGTGCAATCAGTTATATGATTAAGGTTTCAGAATAGTCGAGACAGAAGAaatgcttatatatttatttttggc-caCTTGGTTAATGTGAAGATTCTTTTGAGT------CACCACCTCTTCTTGTTCAAGTGCAGGCAC---CATCC------TCTTACATGTATTGGGAAATATTCTATTCCTGGTTGTTTTCAGACCTCCCAACTAGGAGAAAAATGTACCAACACAGTTATTACTTACAACGCTGTGGCTCTTTGGTACACTGTGTATTGAAACATGATAGATTTTTT--CCTCTGCAGTTCTCTAATACCATTTATTTTATGTTGCTTATATCATTAGTCATATAATAATGTAATCATTCATTGTGCCACCGGTGAATATTGGCTTCCAATGACTCTCTCAAAGGTTGTTGCTGTTTCATTGAGGATGACTATGAATGAATGTT--ATCCAGAGCACTGAGAAAAATGGGAATGATTATTCATTTTCTGATGATTAAAATC-CCACCTAGAATCTTATAATACAAATGGAGGAAAACGCTTCTGACCATGTCTTCTCTTGAACTTTTTAAGCCATTTCACTGCATTTTCCAGGCAATCTCTTT-----TTTACACCACCTGCCTTCTGTACAACACCAGCAGTAAGAATAAATATGAGATCCACGGGCAAGATGAGAGGAGTGG-TCCATTCATCAGAGGAATGACCATCCTCAATAGGTACTATGTAACCTCCGCTAGGGCTACGGAGAATATGGTATTGCTGCATCTATAAGAAACAGTAGATGTTGATTAGCAGTGGTCACTAGTGTTCCACAACAGTGGTCTCAAAGGAACTTAGCTGATATCACCTCGGACTGCCTGACACCTGACACAAACCTGCAGAGATGTTAAGTATGATCCTCTAGTTGTCAATGGTAAAGTGTACATGGGTTAAACATACCTGCCACCATCACCACAGACAAAGAATGCTATAGACCAGAAGTGCCACAACTGAAACGCATATGG-GCATAAGTAACAAATGGATCCAAACATGCATCACAAAGTCAAGGACTAGAGTTGGTCTCCAAACC-TCTGTAAAAGCCAGAGCCCTGAACTTTTCCTGCATTGTATGTGAAAATC--ACCTAAAATATTGTGTGACCCTACAAATGAAATACCATTGTATCTAAAATTAACAATCTTTTCACTTTACAACCATTCTGGCTCTGAAAACTAGTTCATGACTCTGAGATGACCACATAGGCATAGCTGACAGAGCTCGTTAGGGCATCTGGTTGTCCACATGAAATATTCCTAGAAGATAAGAGACTACCACAAAGGAGTAAAATGGTACCAGATCTGATGAAG----GTATAGATTCATTCATAAAGCACATGGTATAATGTCATTGCCAAACCTGGTCAGTCCCAGTCATGGGAGGGAGAATTAAAATTTCAAGGGAAACTCTATGGCTTAGATGTTGACTGCCCCC-ATGGCCT-aggtgttaaaggcttggtcgcTAGCCTCCAGCACGACTGGGAGGGAGT--AGCCCACATTTAATGGGTGG---GGCCCAGTGAAAGTCCAGTCACTG-------------------------GGGACATGTCTTTGAAGGGGATCTTGAGACCCTGGTGCCTTCctttttgtctcttgctttttgcTTCCCAGTCCCCATAAAGTGAACAAATCTCTTCTTCCAGATGCTCCCACCTTGATATACTACTGTTTGTC-ACTGCCCTAAAGCAGTGA---CAACTGACTTTGGGCTCAAAAATCTCTGAAATAATGAGCCAGAATAAGCTTTTCCTCCTTAAAAGTTGATTATCTCAAGTA----CTTTGTCACAGAGGTAGGTAGCTGAT-------AGGATAACCCAAAGTGTGAGGGTGTTTC-CAAGAGCTTGGTTGATATTGGCCACAATATATTGAATTTAGGGATAAAGAACTTTGGAA----TTTAAGAATAGGCTAGGGAGAAAAC

a score=18442
s chr3           157470986 1965 + 160039680 CCCTGTCACTTCCTTTGGCCAAAAGAGTGAAAATAAAGTCA--TATGTCACTTCATGGAATTAGATAGAACCAGAAATGGTCAGTTTACATTTACCTCATT-CATTTTCTGGCCCCTTGGCCTTCTCCTCATTGATGGTGTGATCCCCTTGTGTATCAGAACAACAAAGACACCAGAACAAAACATCCAGAATGTGTTCCTCCTCTGA------------GACAACTATTGTACTGT-------------ACGGCACCACATCTGTACAAGTAAACCCTTGCAATCATTTTCTGGGTTCC----TCCTCCTTCTACCTCTTCCTTGACCTCTAGTTGTCATTGTTTTTCATCTTATCTTATCTCACTCCTCTGGCGATGCAGATGTCTGTGTT-----ACCCAAACCACTCTTGGTTTTCTGAATTTCCAC-----CTTTTCTTCTCTCATTGAAATTTCTAATCATATTTCATGActctgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcATGATGTAGTTCTCCATACCTTGACTTTAAGTGTCAGGTTGTGAACCTTACAGCACCCTCTTCACTCACCTACAGCCTGGGTTATGAATCCCCTCAAGTGTTTTCAGTGTCCCAGTATAGAAGAAGAT--TTCTTCTTTTGGCCCTAATATTTTATTTTCATTCTATCCTTGCAAAAACAGAAGCTCATATTCTTGGATGTATATTCTGCACATTCTAAAGGAACCCTTGGAACTGGGAAAAAAAATTTAGTTGGTAAAGTGCCAAACAAGCATGAGGGTCTAAagtctgtcttgtgaaattggtgagctctggttcagtgagaccttgccttaaaacagaaacagagaagacaactgacgcctgattttggcctgtacacacacacgcacccacataCTTATGCACACAGCAACAAGTACACATGTACATACTACATGCACACAAATTAAACTAAAGGACATTCTATAAGAACCATTAACTAAGAAAAGTTCCATTTTAAAATATCTCAAGCCCATAACCCTAGCTCTTACTCAACTCAGCTTTTACATTTCATTCAACTCTTGGGACCCTGAAACTCAATAAGCCGTGTTAGCTTGATCAACTGCCTTCTGTGTTTTCTTCCCATGTTGACTTTAAAA----TTCAATGGTTTTCTTCTGA--------------------------------------------------TGCAG-------------------------------------------------------------------ATAGGAAGAATGGCTGTCCTGG---------------ACTCTTCACACC-CTGTGTTCAGGGGACTGGATCACACTCCCTTCTTAATACTCAAGATGCCCTTGACTTCTTGGTCTTCTTTAGCACAA-AATAG---------TGTCTTTCCTTAATCT----ATGTGAGCC---TGGCCACCTCAGCTGGCTTGCTGTGGGCT--TTAGTGCTACAGCTGCACAC--AGTAAACTACGTTCTGAAATATGCTTTGTTTCTTATTTAAATAAACTCGAAAATTAAAGTCCCAAAAAATTACA----CCATTTTTCTAAGGTTGAGAAAGGTTCTGCATGATGTAAAATTACTTCAGTATTTATATGCAT---CATAACTAATTGACTCTAAATGGCTTTGATTTCCAAGTGTGAGGCAACAGTCTGATGAATCACTCACTAATGGTTCTGCAGGTCAATTCATGGCATCTTTGGATGAGCTACCTAAGGAAACAGTTGGGTAACTGAGCTCCAGAAGTGAGTATTTAAGTGATGAGCTTTGTGGAAAGAAAAAATAAAGCTTTTATAGTAGCATTGACAGGAGAT-GGGAAAATCAAACCACAGGAATGGTTTT-TATAATGGAGCTGATTTGCCCTAATAAAATCTAAGGGACTCGTCTGAGGCAGAAATGGCGATATTCTTAACAGCTGAAGACAGCTGCACT--GTAAGTGCTAAAGCCTGGCAATGAGGAGTGAGTG-AGGAGAGAGTATTTAGTGACTGCATTCACATCCGAGCAGCTGTTCTCCCACAATCGCTTAGCAAAGCTCCAATCACAATTGCCAGAGTTCTAGTGATAATGGAGA
s HiC_scaffold_1 144697785 1794 + 233722169 CCCTGTGACTTTCTTTGGCCAATATAATGCAAGCGAAGTTAAGTGTGTCACTTATTTGAA---GATGTAAC-AGAAA--GTC--------CCTACATCGCTATGTTCTCTCTGTCAGTCACATTCTAGATAAAGATGGGGTCATCAACTTGAGTTCCagaataactaagaca----------atgacaGGGAAGAGTCCCTCCCTAGGCAGCCCTTGGTGGACAACTGGGCTattgtttttattccattaaCAGCTCC---TTTg-------aaaaccaagcaagcacttcACAGGTAATGaagctctttttctattttcccctCAACCTCC-----CTACAGTCTT--ACCTTA-CTCATTTTACTCTTCAAAAGA-------GTCCATTTTCATTCACCC---CTGTTGATGGTTTTCTGAACTTTTATGATATTCTCTGTTCTTCCACT-AACTTTCTAATCATATTTCATGGCTTCACTGGGTttc-----------------------------------------ctaattttttctcttttacaatgCATTTCCCTATCTTTTGATTTTAAGTGCCCATGACTGAAACGTGCAGTTCTTTTATAACTTGCCTGAAGTGTCAACTAAGA-TTTCTTGAAGTAATTTAAATGC--------AAAAGAGGATGATGCTTGTTTTGGTCCCAGTACTGTATTTCCGCTGCCTCCCTGAGAAAATAGTAACCCGCATTCCTGAAGGTACATTCTGGTCACTTTAAAGAACTCCT------------------------------------------------------------------------------------------GTGAGACC---CACTCAAAAAGAAA--------------------------TGGGTTTTAC-----------------TACTTA-------------------------------------------------------------------------------------AATCTCTTTCTTAAA---TCTATAATCCCTAGCTCT--CCTTTCTCTAGCtcacattttg--tttcatttgactcTCAGAATATTGATACTCAGTGAACTATTTTAGCTTCACT--TTAcctc---tgcttttctctcattttggttttggcacttctttgatgtttttcttctaaataagAACaggggggctggtgatttagctcagcggcataagcacctgccttgcaagcaggcggtcatgagttcgatccccggtaccgataaaaatgaaaaagaaaaaaaaaaatgatcaagaacAGGAGGGATTACTACACTGGGTTTCGCTGTGTCTCACCCCCCACTCCACTCCCCTCAGTGAAAAGGACCACACTCC-TTCTTGGTACCTTACATCTCATCGGCTCAGCTGCCTTCCTGAGCACATTAATAGagacaaacttgttttttttttttcttattatctaaGTCCCTTTGCCCTGTAAAATACCTAGTAGTTCTCTCCTTATT-------CTGTATGTTTaacaaacta--ttttaaaataatgtttgtttATTATTCAAGTAA---TTAACACTGAAGTCC-ACAAcgctacagttttattttttctcaagttCAGAAGGGTTCTAGTCAAAGGAAAATGGCTTCAGTGcttatgtgtatgtattttatcAATTGAAACTAAGTCACTTTGATTTCCAAATAGAAGGCAAGAGCGTG-TGTATTACTAAATA----TCTTCGGGGTGAGTTCATGGCATATTTTGAAGAGCTACCTAA-----CAATGTAGCAGATGAGTTA-AGGAATGAGAATTTGAGTTTTCAGCCTTGT-------AAAACTA--GCTCTAACATAAGC---GATAGGAgatcaaaaaaatcaaagcaaagaaatCCTTTTCTGCAATGGA-CTCATTTGCTCTAATAAAATGTAAGGAGCTGGTATAATGCAGTAACAGAGCAATTCTTGACAGCCGAAGGTGACTCGACTAGGTAATTTTCTATGACT-----------GTGACTgcagtaaaaaatgtttacctATCACTTCTATATCTATTCAGTTGTTCTCCTGCGATCCCTTTGTAAAACTCCATTCTTACCTCCTTGAGTTCTAGTTGTAACAAAAA

a score=31395
s chr3           157474157 1397 + 160039680 GACATGATAAATTTTCCTTCAATATGAGTCC-----------AAGCAACCCTGTGTCAAA-TAAAACTGAAAT-TCTTTTGGGCCATTCTAGACGAATCAGACATGATCCTGAGTGAGA--ACTGAACTGGAATGGGAAAATCTCG-TCTGCACATGCTTACAGCTCCTCCTGCACAGGTTCCAACAGGAAGGAGTTGTTAGCCAGTCAGAAGGAGGAGGCAGCATGGCTCTTGGTGTCAAAGAAGAGACCCA--CACTG--------------CTATGAGGCA-------AGGCTAAA------GGACATCTTAAAGACATCAGAAATACCACATATGGCTATAAACCAG----TTAGGACT---------TGTCTTTAAAATTGAGGTTTTATTTGGTGGCTGCCCTGAAAGTGCCAACTACTAGTTAACTTTTAAATTATTACCTATCACAGGCATCTCTTCTTCCCTGGTTTATTTT-----------GTCTGTCCCCAAGTGTCAGTTCAG-GTTTTAAGTAAAAGGTAAAAAATAGCCCAGAAGTGAGTGATAGAGAGGCAGAGATGTGAGCATGAGAGTACATGGTGGAGTAGTATAGGTAGGTGTACAGGGCACAGAAGCACTCTGCACTTAGCCAAGTTTTTTATAGAACTTATTTGCAAAAAGTAAATGTCAAGTTTAAGATCTCAAAATGGAATGTAAGATGATATTACTGTGTTTAATTCACATCGGCGCTC-AAAATGCTGC-AACGAGACACATTAACACGCTGCAAATGGTTTCAGGTTATGTACACGCAGATGGATCTTGCCAATGATGTTTAAGTGCTAAGAGTCAATAGGTTAAAACAAATATACTCCACATGACATAAATTCAAGTTAAAAGTTTTAAAATGGTAAATGTTCTT---CTAAACAGTGATGCTGTTCTCTGCCACACTGTCACGTCATGCCCTTGTCAGGGGAAATAAGCAGGATAACAGAAGACCTGCCCTGGTGTGCCTGA-----GAGACAGAGTGCAGCATATTAACTAA---CCGTGCTGCCATTCCAATCACCAC--TCTTCCCTCCTGCCAGGCGACAGATCTGAGGAGGTTCTACAC--------------------ACAGCTACTGCACTCACACACACGAGGATCCAGGCTTGCCTGCATGCAAGAACACAAGGTCACTCTGCCTCCGCTACTCTTAAGATGTCCAAGATGCCCTTTAAATGCTTCAAGACAATGTTGTTCTAAGGTCTTGAACTCTTCAGCATGAAAGT------------------TTCTAGGCTGAGACTTCTTTGCTCACTGTAATATCAATAACTTAAAAGTACTGTCT----------GTATCACAAA-------CCTTCCATTGCCTGTGTGGGATATTCCAGTCATCCATTGCTTTTGCT---GACTCAAGCTACAAGCACACACCTTCCCCAAAGACTCAATTCTTTtttttttttactttcttttttttaattagatactttcttcattcacatctccagtg
s HiC_scaffold_1 144704391 1414 + 233722169 GATAAAGCAAATTTTCTTCCAATACGAGTTTCCTTTTAGCTTAAACTATATTATGTCAAAGTAAAATTGCTGTATCTTTGTAGCAATCTCCAATTAGCCTGAAGTTCCTCTTAATAAGGTGGCTGTGTTAGAATTGGAAAACCCAGGCCTACGCATTCACTCAGCTCCTTCTGGACTGGATCCCAACCAAAGAAATCATTCATATCACCAAACAAGGAGACACTATGGCTTTTGGTGAGGCAGAAGAAATCCAAGCACAGAAAAATACGCAAACCAAAGATGCATAGTAAAAGGCCAAACCAACTGGACCCTCTCAAGACGAAGGGAACAC-----------ACGAACCAGGAAGCTGGAACTGAAATCAAATCTCATTAAGCTTGAAATTTTATTTGGATGCAGTCATAGAGGTAGCAATTATTATTTACCTTTTAACGTACCTACTACTCTAG--ATCTCTTCATCCCTAGTACagcttcagaaagaaagaaaagtcccCAAGTTACTATTCAGTACTTTAAACAAAATGATTAAAGTACTATAAATGTG---------GAGGTGGAGA-----------------------------------------------------AAGTACTTTGC-------CAGTTTTCATGAGGAATTTATTTGCAGAAAGTAAATGTCAGGTTTAAGACCTCACA-TGGAACATAAGATGATACTACTGTACTTAATTCATAACAGCACTCGAAAATGCTACCAATGAGATATTTTACCAAACTGCAAATGGTTC-------TGTATATACAGATGGATCCTGCCGAAGGTGTTTAAGAGCTAAGAGTCAATAGGTTAAAACAAATATACTCTCGATGACATTTATTCaagttaaaagttttaaaacagcaAGTGTTCTTCTACTAAATGGTAATGTTGGTCCCTAACAAACTGCCAAATCATGCCCTTGTCaggagaaataagcagaataacAAAAGATGTGCCCCCAAGTGCTGGAGAGGCGAGGCATAGTGAAGCATATTAACCAAGTCACGTCCTG------CAGGCTGCACTGTGTGTCCCCTCACTAAGCAATGCATCTGAGCAGCTGCTGCACTTACAGGGCTAGCTAGAGGTGCAGCTGCTTCAGGGA-GCAT-CGGAGAACCAG----GTACACATGCAGGAATGAGATGTTATGCCACCTCTGCTCCTTTGGAAAGATCAGAGCTGCCTTTTCAATCTGGCAAGATACTACC------CGATCTGTGGCTCCAATGCATgaaagttacttttttttctttaagtactGTGCTGACACTTCCTTGTTCATGGTGCTATCAGTAATTTATGAACACTGTCCTCGTGTGAAGGTTTCCCACAGTGCACCTCTTCCACAGTCATTATGCGGTAGCCCTGTTACTAAAGGATCTTCTTTTCGATTCCAACTACAAACACCTGTGTTCTCCGAAGAACCA--------------CTACTTCCTTTCCAGTAGTCTAAAACATCCTCCCTTC----CCCCAGTG

a score=35151
s chr3           157479416 2250 + 160039680 CAGAGTCCACCGTGTGGCTGAGAGA-------TGGAGGAGAGAGAAGCAGATGGAGGACAGGGGGCTAATAAGGAGGTTCTGCTGCTCTGTGCCTGCTCAGCACCGAA----GATGTACCTGAGGAGCAAGTTAAAAC-TGTATCTGATTCAGGAAAAAGTCAGCTCTGGAGACAAAGATGCAAGACCAACTGTGGCTTAGAGTAAGCCTCACCCTAGAATTGATGGGAAAAGGTTTGGAGGAGGAACATGTGTGTGTGTCTCAAGACTAAAGCCCAAGA-----------CTGAGTGCTATCTCAACTAAAACAAAAGA----ATAAGCCAAGTTAAGGAGAGACCAAAA--GTGG----------------AGAATGATGGCCAATCACTCTGAGGTAGGCAGCT-TGGGTCATCTCTTCACCATGGGAGCTCCACAGCATATAC--------------AGCATCCTGAGTGCTCACTCAGTGTGACCTCGT------------------------GTCCTTGGTGATT----------------ATGCAGGTGGCTGCAGCCCACATAGAAAAAGCTTGCTTTTGTACTGAAAGCTTTTATAAGTA---------------AATGGAAACGAT-GTGGTTAATCACTCCTAAAC-AGAATCACACTTGTTCACCATCAC-TATTGTATATTGTAAGTGTATATCCGGCCAATCCTT-----------------GGACTTGGTTACCCCAGTGATGT-----------------------GCAATGCTGGGCTATTACA-TGATTTCAATGTCATCAGGTGACATT---------------TGACCTCAAGGGACCATTGT--TGAACATTGGATCTGTCATTGACCAAAATGTCCTTAGGCTGTTGGTGGCTGCAGCATTCAGTATGTTGAAGAAAAAAAAGGCGGGGTAGCCAGAATTAAATGTGGCCAGGACTACATAGATCTGTTGATagccccactgttgacccgctatgtaaaaatcagattatttaacctctttgagcctctgtttgtacatctgtaaaatggagagatgagcatctgtgtca-ggggctgttgcaagagctgaat---ttaagatgtagaaagtgcctagaggctggccaatgacacagttaatgctGTACGTTAGTAAGGAGAA--CTGCAAC-----------------------------------ATGGACAAGACAACTAA-GGCCTGGATGGAGGGTGAATTTGGAACAGCAAGCCCAAGTATGG----GGTTACCACCACAGAAGCAAAAGA----AAGAGCTCTCATTATTAACAATATTAGGTGTCTGAAATACCACTGGGTTTATTTTAGAAACACAGATGGCCAGGCAGATGTGCGCTGCGAGGGAGTGTGTGAACAGCAAGTGACATGAGCAGTAGCTGTGGTATTCATCTTGAACTAGACATCCTTCTTTCTGATTAAGGCATTTGATGAAAAATGGAGACAGCTCCACAGAATACAAATCTTTATTTGT-AGCACTATCATGCTCACAAATAAAGTGTCAAATTATAGAATTTTATGACC---AATTTTGGCTACTTTTTATACTT--CACT--CTGAGAATGTATTATGTGTTTTCTACAACCATATAGCATAAACTT-----------CTCAGCA----GCCCACGGAAGCTGTTCTTACTGGCACCTCGAGCTCCTGAGCAGGGATGCTGAGCTAC----------------TTGTTTTGGTTGCAAACCTAGTGAACATCAGAGCCAATGCCAACTC---------ACAGGGCTGACCCCAGAACCACACCCTTAGGTGCTGTGCACCACTGCTTCTCAGGT---AAGGAGGGAAGAAGTACCAGGAGAAGGGAAGA-----CTGTGCTGTGTTACAGAGATCTGCCACACTGCATTAGCGAGGGAA---------TCCAGAGACTGAAGATGTAA---------CCCTGCACCTCA-AACATGGCCGTTACCAGAGACTAGCCCTTTAGGGAAGAgattg------------------------gccctaatccaatctgacaagcacctttatg-----aggatcacacctcagaacacacagagaaactagaaatgtatgtgcaaagagaaaaagctaagagcagacacaagtggaagagaagccacctacaagccaaggagagacctccagaaagagtgggatgacaaactcctctacacccattttcttacacttccaa---acacagctataataaataaattcctCTGGTGACATCCTGAAGAATGAGCAGCATTCTGTCTGCCAGTTGCTCATGATTAAGCCCTG-TCATGTATGTGTATGGCTGTGtgtcttcgctttccatcttctcctgac-ctatcatcatgtaac-----atgcatgtgtaaagttgtgtgcccacagcatttcagtattgtcaattctacactgtatt---gtcacagta-----------ttgtcagttctactaactcacagagatcaaggaaaggagtgactaccacacgaggactcgggttttgcttctgagagaagg
s HiC_scaffold_1 144709158 2446 + 233722169 CAAAATCCACTCTGAAGCCTTCAGACTGAAACTGAAGGAGAAGAAACAATTTGGAGAGT--GAGGCAAATCATGAG------TTAGTTTTTGCATGCTCAGCACCCAACCTGGAAGTGCCTGGAAGCTGACTGTAAACATGCATTAAACTCAGGGAGAAAATGGCTTTGGAGATACAAATGTAAGGTCCCTCACTGTTGAAACTGTACCTCATCCTAGAATGAGTGAGTGCGAGCTTAGAGGAGACAAACAT-------TCCAAGAATTGAACCTTGGGAAATTCCCATATTCAAGAGCCATCTTGTGTAAAAAGGAAGACCTAATATGG-AATCGAAGGAGTGGCCAGAAAGGTGGCAGTCACGTGTCACTTAGCATGAGGGATACTC--TCTGAGAAATGCATCTATTGGTGGCTTCATCCTTATGGAAACATTATAGCATATACTCACACAAACCTACACCACGCAGATTAATCACTCAACACCACCTCTTCATATAATTAAGAGGTGCAGCATAACCATTGTAGACTCTTTACATAATGCCAGATGGATGAGGATGTAGCTAGCATA-AAATAGTATGTTGTTTTACAGTAA-CATTTATAAATAGGAATATCCCCTAACAATAAAAAGTACAGTAAGTAA--ATTCATAAACCAGTAATATACTtgttaattattaaatattatataacataTGTGATTATATTGCTACACTTTCAGATGACAAGAGCAGTAAATTTGTTTACAACAGCATCATCACCAAAACACGAGTGATCCATAGTAGCACTAGAATATCACAGTGGCGACAATATCACTAGGTAACAATAATTTTCAGCCATTATAATCCTATAGGACCACTGTATTACATATATGTTCCATCACTGACCAAACTTTCATTAGGACATGTATGACT--AATATTTCGAATGGTAAAGAAAAA------GGAGTACCCAAAGAAAAA-----CCAGGAATGCACAGGTGTGCTGATCACACCGTCTCTAACTCACTGTGCAAAGAGCAAACAATGTGatctctttgtatttcatttgactGATACGTAAAATGCCAATAATGGTACCTATGTTATGGGGCTGTTGTTAGAACAAAATGATTTAAGATATGAAAAATGCTTAGAACATTTCCAGGCAAAAACTGAATGCTATGTGTCACTAAAAAGAATTCTGCAATCAATATCTTTATAAAGAAAGTAGAAAGGCTAATTTATgcacaagaaaaccaacaaactagATTGAGGGTGAATTTGGAACAGTAAATTTAAGTACAGAAATGATCACTCACACAAATACAAAAGACACAAGGAGTTATTATTATTAACAATATTAGGCATCCGAAATACCACTGG-----------AGGAACAGATGGTCACACAGATGCATGCTGAA--------TGTGAACACTGAGTGACACAAATGGCAGCTGTGATAGTCACCTTAAACTGCACATCTTTCTTTCAGATTATGACATTTGATGAAAAATGGATACAGCGCCACAGAAGATAAATCTTTATTTATGAGCACTATTATGTGTCT-------GTATCACATTGTACAATTTTATGGTCAGAAATTATAGCAG--TTTTATACTTAACACTTACTGAGTGTTTGTTATGTGTCAGTCACTACTAAGTTATATGTATTTATTCTCTTTAGCTTAACACCATCCCCACGGGA-----TATTATTGGCATCCTTACTTCACCTACAAGGAAGCTGAGATACACAGAAGTCAAGCAATTTACTTTAATTGCAAATCTAAGAAGCAGTTTAGCAAAGAGTGAATCTAGTGTCCAAGTGGACCAATCAAGAGTCCAGGCAGTTAGCTGTTATGCTACACTGCTTCCCAATTATGAAGGAGAAAGTGAAaatagaggaaaaggaagaagaatctATGCTGCCTGTcagaaatctttcactttttattagAAAGGAAACTGTGTTCCTCCAAAATTCAAACGTGTAAGCCCTACCTCCCAGCACCTCAGAATGTGGCT---------GGCTGGACATTTAAAGAGGTAAATAAGTTTCAAGGGCATCATACAATGCACTCTAATCCAATCTGACTAATGTCATTATGGGAAAAGGGAAATGC----AGATGCACAAAAAAACCAGGAATGTACCCACCCAGGGAAAAGCCCATGTGAAGATGTAGCAAGAAG-GTATTTACCGCCAAGTGGAGGAGAGATGTC-----AAAGCTGG------------------------TGCTTACACTTCTGGCCCACAGAACTGCAAGAAAGAAATT--TCTGGC----TCAGGAAAA---------ATCCTCTGAGCCAGGTCTTCTGGATAAAACTCCACTTATGTGTGGATACAG----GTATCTTCGCATTTTTTCGGCTCTTTCCTCTATTATCATGTAATGTaaaatgcat-tgtttttttatat---CATAGTATGTAACTATTGTTAATTCATTATAGCATTGAAGTTACAGGACAAGTTTCCCCTTGTC-----------CTCGTATGGAC------AAGAGGAAACTATCACTGGAGAAC-------TGGCTTCAGGGAGAAGG

a score=19138
s chr3           157487759 1386 + 160039680 ACAGGTGCTAGAGTAGA-GCTACTGTCTGAAGACCAACCTGGGA---AAGGGAGACAACAGATATGCTCATCTCGGTTCAA-CCTTTCA--AAATAAGAGCCAAAGCAGGAAGAATCACATCTAGTCGGGCAA--GAAGTAAAGGCATAGGAGATTCTGTA-----TTTTGTAAAGAAAAGGTTGGGGCAATGAAAGACCAATCTAGGAAATGGATCAGCAAAACTACTAGATTGCATTTCAATGAGAAAGAAAAAAATAGTAATATTAACATGAAAACA-AAATCTCACCCAGTGGGCAACCCAGTGGGGA-GTCTGTGAACTAAGCAAA--------AGCCTCACTACTGTCAAATGGAGGGAGGCTATATTAGAACACAATTTCCCA-TTACAAATTGTAATTTTTCTTTGTTATCTTGTTATTGGTCAGCATGCTAGTATCCCACATCTTCCCAACTACACCCAG-CAATACAATGGTA-CCTTTGTCAGTTTCAACTTACACTGTAAATCTCAAGGAAATATAAACGGAAAAGCCTCAGGACATTACTGGGACCTGAAATCTAA--TTAAAAACAAAATGAGAAGCCGATCTGTGTTCTGAGTATTTTTGGAAATATCCTATTTAATCGCAG-CACTCAACTAATTACCAA--TTTAAGGATAGA----ATTCAAAATAAATTCTTCTTCAAGACTGTAGCTTCGACAGAGAGCTGAGGAG-----TTTCCCTCCATCAGACAACTTCTCAAGGATAATTTATTCACCTCCTGCAGGAAAATAAATCACTAGGTTTAACATATATTGTAACATTATTTCTATAGAGTGGGTAGACTGTAAATGAAA-TACATAAAAACTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------TTGATATGTTCAATAAAATTGCAATGCAGATAGAGATCACTTTTCTAAGATGCTTCTCCAACATACTGAGAGCTTGATTTTTCTTAAGCCAGAAAAGCTTTCCTATATTAGATTTTCTTTTAATTCCCCAGGATACTaaataaaataaaataaaataaaataaaataaaataaaataaaataaaaGGACATCATGCCTTTAGTAAGGATTTTTTTTCTTTCAAATGTGAAAAGAAGAGATCCAATTTTCCTGACTAAATGGATTGGGAAGGTGCTAAATAATTTTGGCTCTATTTACAGTCTGAGAGAGTTTATTTG-GTGTGAACTCCAGGACTGACTCTCTTTGAACTGCTCTCAGTCATTCAAGGTACACTTCAATACAGGAAGCA-CACATGACTGCACAGACTTCTATAGCAAGTAGCATTCCTCATGAACTTACGCATGCTTTTATTACTCCATTACAAAAAGAGACAGTTGGTTCTTTCCAAACTTGTGATGCAAGCTCCTTAC-TTATATGCCCCTCCCCCAAAGCATGTCAGTTACAGACTAAATacaagct
s HiC_scaffold_1 144716589 1555 + 233722169 accagttCTACAACAAATGCTACTGTTTTAAGACAGATCTAGGAGCTAAGG------CCAGATAAGCTTGTCTTTGTTCAAACCCACCATCAAACAAG-GCTGAAGCAGAGGGAATTATTTCTAATAAATTAATCGGAGTAAAGACA---GGAACAGTGTAAAAACTtatgtgaaaaa----tt-------caaaatgcatatttataaaatgatttagataaaatgtcatatt----ttagataagaaaggaaa------tgatattaaaatgaaaacagaaacttcATTCGAGTAACAGTCAAATTTGCCTgtctgtgaaataaaaaaattaaaaaaaccataactAGGGTTAGAAGA--GGAAGCATTTTGAGAATGGATTTTTCTAATTACAAGTTGTA----TTCTTTAATA-CTGCACATCTGTCTGTATGCTAAAATTCCATATCCTCCCTA--ACAGGTAGATAAGGTAACTATGTCCTTCATCATTTTTAATTAATGCTGTAAAATCCAAGAGACTATAATGTATAAAACCTTAAAATAA----GGTATTTTATAactagatttaaaataaaaaagataagctGATCTGTTTTCCTAGAATTTCTGGAACTCTCTCATTTAATCACAAATGTACAACCATTTGCCAAAGTTTAAAGAGAGATGGGATTTAAAATAAGTGCTCCCTAAAAAATATAACTTCAATATAAA----AGGAGGTAATTCTCCCTCAGCCAGGCAACTTCacaaatataatttattcattcataggAGAAAGACCCATCAATAGGTTTGATGCCTAAGGTAAAGTTACTTCTATGCAATGAGTAAATGATTAAGAAAAGTGCATAGCAACTcagggcttgattttttttttaacttagagaaaaaagctaaacagaaaaaaggatacaaatattacagaaatttttaaaaaacacttagaAGTCATtacttgataaattacatattgtcatcttagaaatagttgttcaagttataaaatcaaagcataaaaagtggacacaaTCTAATAATACCAGTACAAAACATTTTGTTCAATAAAtcagcaaaaacttagtagtatggttatctatcttacacattagGGCTtgatattttcaatataattgtcATACTGATAAAGAATGCATTTTAAAGATGCTTTATGAACACATGGAAagtttgaaagtttttaaaacaggaaagtTTTCCGAAATTAGCTTTTCCAT-AATTATTCAGAatactaaa------------------aagtaaataaataaaagcaagaaaga---------------------------tttttctttaaaatgtgacAG--AGAGATTCAGTTTTCCTAGCTAAATGAGTTAGAATAATCCTAAATAATCTAGCCTCTGTTTACAGTTTGGGTACATTCATATGTATGTGAACTCCCAGTGT---CCCCTCTG--CTGATCTACG------AAGGCAGGGTTCTAAGTAGAAAGTGTCTGAAGATACTGTAGACTATCACATCAATTATTTTTACTCA--ATTTTATTCgtctttatgtta----aaaaaaaacagaaacaatta-----ttTGAAACCTAGAATGTATGCTCCTTATAGAATATAAATCT---CAGGAGTATATCAGTT----ACCACACATAAGCT

a score=34679
s chr3           157491639 1490 + 160039680 cacacatgtcattgtggccacatcccagtgagtaactgcactcaccaagtcggc---------catacgaatgtgtgtgtgtgtcggaagtgttgccacagcacagtgaggagatggtgacataaatatatgtccag--gtgatgagaaacacaccgatgtgc-ccactgaactcgataaagatgcttttgctactcatggttccttagctacacctcaaaaccgcatggcggtcccacaggactggaaatggaaagagaagtacagtggaagagaagccgaagtggaaaCTA--CAGGAGGCACTGCTTGTGGTAGCATATAACCTAGCCAAATCTCATCTCATCCCTGT-----------------------TAGTCTCCCTGCAGGCTTC-----CTGTTGCTACC------------------GTCGGCTTAGCAGCTT--------AATGCACTTCT------CTCTTGCTTC--------ATTTCCTTTATTAATCTCAAAAATACCAGGAAGTCCAGCC-CTTGC-----------------------TTTTCT---TACCCCCCTTTTCAGTTTCTCAGCACATCTGTATTATCGTCTCCATCATTGTTATCATTATTGTTTTCTCTTTCTTTGCTTCCACAGCTCAGAACCTGAATTTCATGGCTGACATCACAAGCCATCAGAAAAGATAATTGCTTGAGTGCGATAATAGTGACTGACAGCTTCATCTCCAAACTACTTCTCAGTTCACACTCCACACATGGGGAACTGAGAGAACACGACACC-CCTGTCAGTAAAACAGAAGGATCCTGTGACAGCGCTTCAGTTGGATTTTTCACCTGGCACTCATCACATTAGCACTCAGTTAAAATAGCTCCATTCATTATTCCAAAGCAAGAAAAACAAAGAAGCAAAACCAAAAACCCCTGATGTTCCAGATGTGTTAAATGAAACCATACACATATGTTAAAAAAAAAAAAAAAGCTAGGATTACACCTGATCTGGGGTTTTCACCCCCTTCAAAACAACCTGTCTCCTTTTATTGCAACATTTGTAACTTTGTTTCCAACAATATGTCAATCACAGGTCATTTTCTTATACAAGTGAGTCATTTTCAGCA--AAGAATGAGCATCAG-GCCCAATTGTCAGCATGACAGGTCAATCTTCGAAGTACAGCCGGAAGTGCCTAAGGGGCTCCAAAACCTCCACTCTGG-----------AGTGCTGAACACTAAGCAAACTTCCAAAAGTCGTGACCCCCACTCAAAAAG---CAGGGACTCAG---ATTTCCCAAAATTTGTCTGAAACAAAGGCCATTCTTTCTCTTAAAAACATTCTTTCTCCTTCCCAAGGACATTTCTCAAGCTTCAGAGGACAGTAGAGAGTGGTGATCAAGGATATGAGCC-GACCAGAAAGTCCA---GTTTA-CGTCATACTTCTGCCGTGATTGGCACAGGAATGCAGAGAGGTGGACAGATTCCCTAAA-CCTGGGAGCCTCAGTTATCTGGTGTACGAAGTAC---AGACAATGCTGTGTTCCTT-----TCAGTTGGAAGGGTAAACGAGGCTG-------TAGCATAGCATACTGAGAGAGCATACAATTTTCCTGTTA
s HiC_scaffold_1 144727446 1503 + 233722169 CACGTATACTGTTTGGGCTATAAATCAGTGAATCACAGCATTAATCAAGTTGACAGACCAGACCATAGGAATATACCTG------GAAGCTATAACAATActagaatgagaaaagaataattcaaatatatgagAAGTGATGGTgtaaaacacataaatatattcctctaaattaaagcaaaatacaTTCTTCACTCAAGTTTCTTTAACTACATCTTAAAAATGTATGGAAA--CTGCAAAACTACTAAATAAAGGaacaatgaaatggaagaaaagtcAGAGTGGAAAATAATCAGCCGTCTTAATTTACTGTAATTAGCAATCTTGCCCAAATT--TCTCAAACGTATAGGGCCATGGCGGTACATTGCCAGGGTCTCTTTCAAAGCCTTAGAAATTCTTTCCATCATTTGAGGGCCTTGACGCGTAAGCTTCACAACCTTTGAGGAAGATTCACCTCTAATGGGCCTCTGCTTCCcacttttgtttccttgtttattCTTGGAAACAACAGCAAATTCTTCCACTTGTATTTGAGGGCTTTGGAATTTCAATTTTCTAAATAAGTACTTTTTCAATGCCTGATCACATCTGTGTTGT--------------------TTATTG----------------------------GAACCTGAATTTCATGGCTGGCATTGCAAGCCACCAGAAAAAATAATTGCTTGAATGTAATAATGGAGACTGACAATTTCACCTACAAACTATTTATCAGTTCACACTCcatatatcaggaatcaaaagAACATGACACCTCTTGTcactaaaacaaaagaaacttgTGACAGCATTTCAATTGGATTTTTCACCTGGCATTCACCACATTAGCACTCAGTTAAAATAACTTCATTCattattccaaaa------------------------aaaaaattctgtagcaCTAGACAAGATAAATGAAATTCTATATATAT----------AGGAAAAGGGTAATACTGCACCTGATCCCAGGTTTTCACCCCCTTCAAAATG------CTTatcttattataatttttttcacttc-tttccaaCAATAAGTCAACCACAGGTCACTCTTTTATACAAGCGAATCATCCTTCTCAGGGAGAATGACTTACAGCGCAGAACAGTAAGCAAAGCATGTCAATC-TCAAAGTTCAACCTAAGGGGTCT------CTCAGTTACTTCTAAACTAGGTAAATGTGTTAGTCCGAAGCTCTGAGCAAACTCTCAAGTGGTATAGCTGTCACTTTCAGAGTTCTGATGATTTGGGTAATTTCccaaaagttgttttaaaaaaggACCATACTTCCTCTTTGAG--ATTCCCTC-CTTTCTCAAGAGCCTTTCAAAA-----------------AGCATGGTGATCAATGTTATGAACCAGActagaaaataaatgtgtttatcaTCATGGCTCTACTGTGATTGG--------TGGTGACACTGAGGCAAATTTCTCAaatcctctgagcctcagttttctacCTGATGAATTTCTGATGATAACGCCGTGTTCTTTATAGAATAGTTGAGTGGATTAAATGAGCTGATATACATAATTTAGCACATTGACTGGCAAT----TTTTCCcatta

a score=37234
s chr3           157504241 1783 + 160039680 AAGGAAACTGTTAGGTATGTGCTAACTCCGTCCTTACACTAGGATGAAGACCAACTCTTGCATGACATAGTCTCACATAGCTACAGCT-------CTTATCAGTATCATAGGAGC-------TGTGACAGACGCTTAGTG-ACACTGTCCAAACACTGTGCTAACTGCCCAGAGAGCTATAATAGTACTGTCCAAATCCTAACTGCCCAGGGAACTATGTTGATGCTGTCCAAGGATTACTGAATCAAATGAAAAGACAAGAAAAGGAAACATTTACTCCAGAAGATGAGCTCTTGAGCATGTGGTTGTTTTAAGTTAGTAAATTAACCTGTTAATTCTGAGAATTGGTGGTGTTGTCGAATGCTATGTACTCAATATACATATAATCCTTACCTGGCAAGAATATGATTCT-GATTAGCAGTGGAAGGATAATAGGAAAATCGGCATCCAGATACAAAAGGCAATCAGGGCAGAGCCACTGCCAAATGGCACTGAGCCTCTCATTAAGAAATCGGATTTGAT-CTCCATAAATCAGTAGCTATGGCACTGTGTATGtccttgagcctgcatttcttgatctgtgaaacga-agtaatagcacctcactcgtgaagc-----------aatggaggataataggtgtaaaaatgctttgtaaattttacagt-agctagaaatataagatactattaATTCTGTTTCTTGTTAGTGTCACCCGTGAGCTATGAAGGCATAGTCACAGTCCTGGAAAGTACAAATTTAAGATGAAACATTTGTCAAAGCCGTCCCATTGGAAGAAGCAATATAAAC-AGTTTAATGAGTAGTCATACATTTCCAGATACAGTGGCAGATGAAATATCACTAAAGATATTAAACCAAGCCTCTATCTTAAAAGGCTGTACTGAAATGCACATAAGACACATGAGAT-AATTCCATA--TGCTCCTCTAGACAAGCAAGCCCAGGAGTG--------------------------TTTACAAACCAAGCAGTTAGAGAAACACCACACCCgtgctgtgctgtgctgtgctgtgctgGGATCCAGGTGAGGAGTGGGTAATGGTTCTGGGGCAGATCTATGCT---CAAATCCCCGCACTTGTCT--CTAAATAGTCAGTGCTCTGCAAAAACAGGAGAAGCTACCGTTCATCTCAGTGTAAGAAGAAAG-------------------------------------------TCTGAGAACAGAACCAAATCCATAACTATAT-CACTGAGGCTCTTCAAAAGCCTCAAACCAGGTGAG-TCCCAGTCATAATCACTCCTTACTCGGCAGCTGTCGGGTCTACCTAATGGAAGGGC----------TCCTCTGAAGGTTGAGTTTACTGAGGCAGAGGAGGTTTGACTGCCCCTTGCTGCCTCACTTCTTTCTTCC-------------------CAAAAACTGACCTTCCAACAACAATG----AAAATAAGACTT--GGAAAGAAGGAGGGTCACAAATTCAAAC-ACTAGGCTGATGCAA-GGTTCAATAAACAAAGTTGTGACTTTAAGAAACAGAACAGTCACAATGAACTTTCTTCCA--CCTTCTCAGTTCAACTAAGACTTTACTCCCACCTGCTGCCT---AAGGGTGAGCATG---GATTCTCAGTGC---------TCACTGACAAT---CTTA-----------ACATTTGTAGGTACA----------TGCTATA---------GAAGTAATGTCTCAGTCCACCATTTCTAGTCCCTCTGTT--TAATGCTAGTCTGTTGCCACATTGTTCTT----------------------CCAACTGACCTCCTGCCTCAGATCTTTCCCCCATTCCAGTGCAGCATCTGCCAT---GTTCACATGGCTTTCCAACTCAAAC--------TGCAGTGTTGAACACAAGATCTAGTGCAAATTTCCTAACCTTAAAGATaaaatcctgaagacatcatat
s HiC_scaffold_1 144740687 1880 + 233722169 AAGAAAAATGTTGCATATGCCTGGACTCAGTTCTTAGACTGAGAAGAGAGTCAACTTTTG-ATGACATAATCT-----GGCTGTTGTTGAAGGGACATAAAGAAGTCAAAGAAATAAAGCCTTATAGTAGAAGCTTACTGGACACT-TACAGACACCAT-----------------------TAGTAC-----AAGGTGTAAT---------ACATGTATTAATGC-----AAGaattattgaaataaatacaaagaagataaaaagaaaatcttatatCACAAAATTA----------ATGT-------------------------CTGCTAATTTTGAGAATAACT--TGTTGTC------TATGTATTCAATACACAGATCATCTTCACCTGGCAAGGGTACAGTTCCCAATTAACAGTTGAGGGATAACATGAAAATCTACAGCCAGATACAAGAGGAAACCAGGGAAGAGACACTGTCAAATGGCACGGAAC------TTAACGAGTCTGAGTGGATGTTCCACAAATCAGTGGCTGTGACATTATGTATGTCCTTGAGCCTCCATTTCTTGATCTGTAAAACAAGAATAATGACTCTTCACTCACGAAGTGGAGGGAAAGTAATAGGAGATAAGAGATGTAAAAATGCTTTGTAAATTTCAAAGTGACCTAGAAATATAAGATACTATTAATTCTTCATCTTGCTAGTACCAGAC--------CAAAGGCATAATAATAATGCTGGAAAGTACAAATTTAAGAGGAAACATTTGTCAAAGCCGT-CCATTGGAAGAAGTAACATAAACAAGCTTAATGAGTAGTCATACACTTCTGGATACAATGATAG-TAAAATATTACCCAAGACATGTGA--AAGCCTCTAT-TGAAAAAGCTGTGCTAAAACCTACATAAAGTCTTTGAGATCCATTCCACAGGGGCTCATTTAGACAGCGGAGCCCAGCAATGCCTGAACTGTTATCCAAGgaaattgtctcaaaaattaatcaACCAAACTGATCAACCACCTTTCTTGTGACAT-CAGTAC-------AGATGAAGGTGAAGAAC---TGCTGACCCTAGAGCTACTTCATGTTTGCCAGATCTCTGTGAATTCCCAGCTAAAGAAAGAATTTGCTG-AGAAATGGGGAAAGCCATTGCTTGTGTcagttttaggggaaaaaaattgcGTAGAGATAAAGAAAGAATTAGTGATAGAGGTGAAcccacagaataaaaccactttAAAAGCTATGTGTACTCATGTTCCC---AAGTCCCAGGCCCGTCATTCTCCTAGCTACCATCAGTCCTTACAGCAAAGCTGTCAGGTTTGAATAATAGAAAAGCCTCTGTTGCTTTCTCCGGATACTGAGTTCACAGAGAGGAAGCAATTTAGGTATCTTACCATTGTTCTGGTTCTTTCTTCCCTGACAGATTCAGCATCTTCCAAGAATGATTGTCC-ACAGCGATGATGAAAAATGAGAGTTAGGAAAAGAAGCATTGTCACAAATTTAAACTAAGAGGCTGGTAAAATAGTTTAGTAAGGCAAAACTTAACttt-agaataaaaagaatttccCTGAGTTGACTTTCAAGTCTTCATAATTTGGTTAAAGCTTTA-TCATCTTTGATAGTTATCAAGCTCAAACATGTTTGAATCCCTGAATATGTTTGAATCCCTGAAAATGTACTGAATAAATACAGTACATTTATCCCTACAATTCACTAATTGCCAAATCCTATTATTAGGTAAAGGCACC-TCCAACTCTGTAAGTTCCTCCATTAATACCAATAGtttatttctgcattatttttatgAAGTCATTACAACAGTATCCCAACTAACTCCCCTCCTCAAATCTTTCTTCTAGTCTAATTCA-----TGCAGTTCAGCTCCTAGAATTTTCCAGCTCAAACTCCACTAGTGCATCATTGCATGCAAACATAAATCCAAATCTCCTATCTTTAACATCAAAACCCTGAAAAAACCACAT

a score=28310
s chr3           157509583 800 + 160039680 cTCTGCTTAATGCTCCTGATGGTAAGATAGCTACATTATGG-AGCAGGTACCAAAGAAGTTCAGATAAG-TCCTATTTAAGTAACACTGGCTCTTGGAAATTTTAG-TTTTAATACTTATACTTTTTTGT-----------------------------------------------TTTGTTTACCAATTTTTCTAAGTGCCTCAAAAGTCTTTTCTTT---GGTCTTTATGGCCACAAACTCTCTTATTAAAAAGTTTTAGTTCACGTCAAATACTTCATGTGTTATTTGAAAAAA----GTACCTAGGGGGAAATTCCTGTAAGAAGAGTAGACCCAATTTAACAGGAAATGTGTAAAATTGTTGATGAAATGCTTT--CTGTGTGTTCAACCCAGAGGAAGCATCATCCGTGCTCTGGAGTGTGAGG-AGAGTG-GAAGACGCTTCACCT---CCTCTGCTGGCTGGTGCTGGAT-AATGGTTCATTTTAGTGTCGGGTCGGCTGTATTGCG-TGTCGACTTCATATAGCAAGGACACAGTGG---------GAGGGGGTACAACCCAAGCCTC----------TACTGTTAAATGAGCTCACAGGCTGCAGGATAAACGTTATATTCAATGAAGGCTAGTCGGTAGCTAGTTTTATTGCTCTGGC------TCAAACTCCTCGTGAGTGTGTGTGTTTTTATGGGAAGACTGTATTT-AAACAACATTCTAATATGAGATTTACCAGAGAAAATAAATTCTGTGAACTGCTGTCCGTCCTGATTTGTAGACACCTTT-TCCTTTCAAT-AACAATAGCACAATAGTCAAGATGTTAGACCATTCTTGCCTATGATAATGGATTGTATACTTGATTTAAAATATCTGAAA
s HiC_scaffold_1 144744721 879 + 233722169 CCTTACTTGATATTCTTGATGgtaaaataattacattatgaTAGTAGACTCCCAAGGCATGTGTAAAATCTTCCAATTAAATA---CTAGCCCTTTGAAAAGTTAGATTTTAAGActtaaatttacatataaaaataatatatgtgtgtgtgtgcatatgcacacatgtgcacacactttGGTGAC---TTCCCCTAAGTGCCTCAGAAGTCTTGTCTTTCTAAGATTTAATAACCACaaagt---ttattaaaaagttttagttCACCTCAACTTCCTTCTGtgctatttgaaaaaaaaaagtatctaggGGAAAATTCACATAAGAAGAGTAAACCCAATTTAACAGAAAACATGAAAACTTGCTGATGAAGTGCTGTGAGTGTGTGTTCAGCCCAAAGGAAGCCGTACCCGCTCT-gggagcaggaggcagagagaaaagatgcAGCATCTCAGCTTCTGCCTGCTTGTGTTGGATAAATGGTTCATTTTATTGTCAGGTTGGCTGAGGCGGACTGTCAACACTATACAGGAGGATCCCAGAGGTACCCAGAAGAGGAGATGCCATTCCGGCTTCCTGCACTTGATGCTACTAAACGAGCTCACAGACTGTAAGATAAAAGTTTGATAAATTGAAGGTCAAT-AGTACTTAGTTTTAGAGCTTCAGCTTAAGTTCAAACCCTTCATGAGTTTTTGTGTGTTTATGGAAAGGCTGCATCTAAAACAACACTAATAGGTGAAATTTATCAAAGAACAGAAGCCCTGTGAATTGCT----CTACTGATTTGTGGAGATTTTTGTTCTTTCAATAAACAGTAGCATGATAGTCAGAATGTTAGAACATCCTAAACTTTAATGAGGGGTGGTATATTTGATTTAAATTAGCAGAAA

a score=37585
s chr3           157519402 1718 + 160039680 TATCCTTTTCAATTGAACAAAACTGAATCTTTTTTAGTAGTTGACCCTTGAAAGATGGT---------GAGAAGAATGCTGGTTCTAAACCTTTGTCAGCGTGAATAGCA-TATGAGTGCCCAGAACTACACATCTGTTAGGGGGATCTTGTGCATCTGTCACCAGGAAATTGGAACAAACTTCATGA-ACCTATGCACTTAAAATGTTATGATGTATTTTTAAAATGGACTTCCACAGAAG-CCTTTAATTTTATTAAGTAATTATAAGCACATAAGCTCTGTTTGATGGCTCTCAAAATATAAACACATTTCATGTCAAAATTGTATCACTTTTGATGGTTTAATTGTGTGAGAAATCTGTCAGGCCCTGGTGCCCTGATAAAATAGGGCAC--AGT-GAAGATTTGTTGCTGAAGGGTGTAACAATATGCTCAGTTAAACAGA-----CAGTGTGTAACAGTCTGGTGCTGTCTCAGAGGGCATTGGCAGTGTTCTGTTCTGGGATCAGGGCAATCCTAACACCTGT---------AAATCCACATAACAAGATGCTCCATCCTCGAGCTTGTATTTTAAgagtactttttgtcttggttttttgtttttctttcatatatatatatatatatatatatatacatatatatatatatatatacatacatatatatatatgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtatacacatatatatTCAAATTCACTAGAAATGCTGCTGTTTTATTTTGCTGCCCTGAGCCCAGCTTCCTTTGCTGACTCCCTGAGTTTCCTAAATATTTTAACTGTTAAAGAAATTATGCCTGGAATGCTAAAATTTCAGGTAACTTCTCAAAGTGATCAATTGTTGGTTGCAATATCATTTTACTTGAAAAAACTTCAAGTCTGCCATCTCTTAGAACATAGAAAATACATATACATGCTTCAAAATAATGGAGTGAGTGTTGGTAAAGTATAGTAGAAAAATT-CAGAAAACTTCAATGTCCTT----TAAGTTGGGTAACTTCACA------TAACAATTCTAATTTTCTAGGTTAGCATAGAACACAGGCAGAGA---TATGTGCTAACTTTTacacacacactcacacacacacacacacacacacacacacacacacacaACCTGACAATAAATATATATTGTTTAAGATACAGCATTTTCTATTGTTCTAAGGAAAGATGA--TCCTGAACACCAGCTCCCTACAATGAC---TTGTGACTACACGTTACTGAGCTGCCACCTGCTGGATCTTTCTGCCTAGCACATCTAATTGTCTGCTACAGATTTCTCTCTTGGATGAATACAATGAAGAGCTCCCCCAACACACTTTTTGTTAACATCACCCCCTTCCTTGCCACTCTTTTTCCAGCAATGTGTGCTCCTATAGGCCAGTTAAAAAGTGCTTCAACCAATTATAGTCATACCAAAGCCTCTCACATCCTTTAAGACTT-------TAACCAACAGAACCGTGAA-------------GAGACAAGAAGAGGCTCAGCAAGGCTTGCACCTTGTGGGGTGCCAGCTGTCTCCAAAGGGCTTGCTCATTAGAAAGTTTCAGGTGTCCATCATGGAAGTAAAGCAGAAGTAATGATGTCCTAACCTCTATGTTCACCCTATGATTGACAGCAGCTTCCTGCAGCTCCTGCAGACTGTGTCCCAGGGTTTGCCACCAAAAAAACTTGAAACAATAACCTA----------TTTCTTTGCAGAGAGTAAATCACCATT
s HiC_scaffold_1 144756480 1541 + 233722169 TATACTTTGTAATTAAACAAAA-----TCATAGGTAATAGCTTATCCTTCAAA-ATGGTAACATGATGGAGAAAGCTTTTGGTTCTAAACCTT-GCCAGCTTGAGTGACAACGTGAGTATCCATCACTAAGCATCTGTTAGGGAAATCTTATTACTCTGTTGCTAGAAAATTGGAACAAACCTTGCAAGACCTACACACTTAAAATGTTATGATGTGTTTCTAAAACTGCTTTCCACAGAAGGTCCCTTATTTTATTAAGATATTATAAGCAAACAAACT-TGTTTAATGGCTTTGGAAGTATAAGCACATTTTGTGTCAAAATTGTATCACTGTCCAATGCTTGCTTGTGTGAGAAATCTGCCAGGCCCTGATG-ACTGAGAAAATAGGGGACCAAGTAGAAGATTTCTTGCTGAAGGATACAAT-GTATGCTCAGTTAAACAAATTCAGCATCGGGTAATGGCCTGATTCCATCTCAGGGAGAGCTGTCAGCTTTCTCTTCTGGGA-CAGAATTTTCCCAATGCCTGGATTTTGGCAAATTCCATGTAACAAGTGATGCAATCTTTGAG-------------------TCTTAACTCAG----------------------------------------------------------------------------------------------------------------------------CAAAGGtagatt---------taaaaattctaccaTTTCTCTT----------------GCTCCTTTTAcctaacagttaaa------aaaaa----aacagttaaaataat----CTTGAAGtactaaaatt--aaacaattattCAAAGAAATCAATTGTTGGTTGTGCTGTTATTTTACCT--AAAATTCTCAAATCCACAGTCTCTTCAAATACCAAAAG---AGATCTGTGTTCCTTTGTAATAAAGACGATGCTAATAAACTGTGATGGAAAAATCGTAGAAAATGTCAGTGTCCCTCTGATAACCTGTATCACTTGATAACTTTGCAAGAAGTCTGATTCTCTATGCCTACAGAGATGACACACAGAGATGGTAGGTGCCAATTTTTCCATA-------------------------------------ACAAAAAAGATTGCAATGAACATAAGAACACTAAAAAGATGCCTTCTATG-TATCACAAGAAAAGATGACTTCTAAAACATGAATTCTCTATGAAGACAAAACGGTATTTTGTGTTACTAAACCGCCATCTACTGGGCTTGTCCACCCCATACACACCGCTACCCTTTATAAACTTGCCTTTTTCAAGGAATCTTTGA----CTTTTTTACCCAGCTGTTTCCTGACAT----TCTTTCTTTAC----CTTGTTCTTGCAATGTGTGCTCCTACAGACCAGGAAAAATTTTTTTCGACTAATTACATTCTTATAAAAGCTTTTCACGTCATTTAAGACTTAGATTGATTATTCACAGTGTCATGAAGATATGTCAGTTTGAGACAAGGAGAGGTTTAAAGAGGTTTACACTTTGCCGAGTACCACCTGTCTCCAAAGGGCACACTCATTAAATAGCTCCAGGTGCAAGTTGTGGAAGCAAAACAGCA-TAATGAAGTCCTTTATTCCTCATGCACCTATTGATTGCTAAGATCCTCCTTTGCTTCTGGCAGACTACA--CCAGTGTTCGCCAT--GAGAAACTTGGAATGGCAAACTACTCCTCTAACTTTCTCTGAATAAACTAAATCACCATT

a score=21265
s chr3           157526422 1606 + 160039680 CATTTGAGGTT---TTCATGTCCT--CAAATagtttatcacagtctccctcaccccctagtgtcttacttgggccctcagtcatttatttatgtaactgtctagctccagtaaat-tttgagGGTTTTTTTTTTTTTGACTCTTGATTTCAAGATTTTATTTCTGGCAAATAAATAAACCCCTTATAAGAAAGTAAGTGTTAAGAC---TAGATTACTTACTTCAGTGTGAATAGGTTTTCTCAAAGGTCTTTC------ATAAAACAAAACAAAAAGATGTTTTTTTGAGAATGGAGAAAGCAGAACAGGATGGGA-------GGGAGGACATCAGTGCCTGAAGCTCA-------------CACCTACTGTGT-------TCTTAGTGACCCCACTCCATTCCCA-ACCCTTTGAGGATAAGGTTCA-------TTGATCATGTTCTGACACTTGTGATGGATTAACATTAATGCTTTTAACTTCCAT--------------------GCCCTTCTTGAGTCTGGCTAAA-----------ATCTA--------------------------------GTTTTCTCA-TACATACACAGATGTATTTATA-----CCTTTGCACAACTT----TAGGA-ACTGTGGTACAATTCTCTT--TACCTACAACAATCAACTCTGTATTTATTGCATGAGTGAA---------TGCTTTGAGCATCTCAAGTCCTGTTCTTACATTGTAATGAAATACCTGGAAAGGCCTTTGTCAGATAAAAGGTGTTTGCATTTTGTCAGTTTGTTTGTTCATTCATTTATTGATGGACAACTTCTATCATTTTCTCAAAATT----ATAACTTTTTACTGTAAATTTTTATGTATTTTTTCTGTTATTCCACTACCCTGCCCTAA---CATGTACTCAAGAAAGCAAGAAAGGGGATCTGCAGTTGACACCTTACACA-GCTTTGCTTTTCAGACTCCAGCAGGGCCAGCATCCTTGACCTAATTAGATTTCTCCACCTCCACATGGCTAGTAAATACTGTAATTAATTTATAAAGGACTCTGAAACACCAGCTGGCAAATAAATTCCACCA--GATTCCTACAAAATGAGAAAGAGCAGTTAAGTTA---AAGAGTTATGAAGTGTGCGTGTGCGTGCATCGCAGTCTCCTATCCACTGACTTTCTGA-AATGTCA-ACCATAAATTATAC----------------------------------------------AAAACACACACTATTTGATCAC------TTTTTACAATGCATTTATTTTAAATTGTAAGGAAGA----CTATGTGACAAAATATGCTCATAGATGTAATTTTGAAGTCTGTGAAACATGA----ATGTCCATATTGATTTATATTGTAAATTCATATTTGCTAAGCACACTGAGAAACTAG-TGGCTGTTCTCAAGAGAAT------GTCAAAGAAAAAAG-TGGACAATCAGTTTAGGAAGGATTT----------------------------------CATGTTCTGCCAGCAGTTACCCATTCAAGAACCATGGTTGCCAAGAC-CTAAaaaatggctcca-------aagatccttaatgaggttataacctctccctgagtgcagacagggtttgagagtataatgggatgtgc---ctccttttattaggtca---tgtaagacagcaaaagtggaatcatttCTCCTATGGTGTCAC---AGTGAATATAAGACT--CTAGCCACGACAATGGCTGTTGTAAGCAGCTGTAACAGCAGCAGCAGCAGGATTGGgagaagctctccagttggctttggagcaatgagctccatggtttttt
s HiC_scaffold_1 144765080 1776 + 233722169 CATTTTAGGTTGAATTTGTGTGCTGTTGAACAGCACATCACAACTTGGTTCATTCCCTGGTGTCTTACATAG--CCTGCTCCATTCATTTA------------GCCCTTCAAAATGTCTGAGAGCCTG---------AACTATGATTTTCAAGCTTTAGTTTCTC-CTTATTGACAATCCCTTCGtatgaatataaattataaaatgttttagttATTTACAGAAGTGTGGATCAGCTT-CTTAACTGTTTTCCCCCAGGAAAGAGGGAAACCAAAGAAC---TTTTTGAAGAAGGGTAAGACAGGGTA--ATGGGATAATGCCAGGGAGAGGTGGCTGCCTCTGATTCATCATTTAAGGAGGCGCTTACTTTATAGACACATCCAGGCTCCCCTTCTTTAATTGCATACCCTGAGAGGGTAAAGCTTAGCCCGATTTGGT----TTCTGTTGCTTGTGATGAAACAAC-CGaatgcatttacttttcctaatAAAGCAGTGGGGCAGCTGTCTCTAGAAATACTGGCAATATACACTGAGTTATCTGTACTACACTACACTACACCACACTGCAACACCATTTCCTAACTACTTACACACCTGTATTTACAAACACCCTGTGCACCCCCTATAGTAAGATATTGTGACATGATCCACCTGTTAGCTGCAATAGCTAGTCTTACACTCATCAAGCAAATCAACTAATGGTGTCCTACTAGTATCAAGCACCTTATTCTCCCAGTGGCATGGAACACCTGTAAAGTCC-----------AATGGTGTT---GTTTTGGCA---TACACGGACACAAATTTCACAACACATAAACACAAAGTTTTTCTTGTAATTTGGTATGGTTTTCT-CCATAAACCTGCATGTAATCTTTGTATTGTttcaggttatttttttaaacatacgTGCTCAAGAAAGCACCGTGGTAAATTTGCAAGTGACACCTTATACGTGCTTTGCCTT-CAGTGATCTGCAGGGCCGGC---CTTGACCTAATTAGACTTCCCCATTTCTACATGGCTAGTAAACACCATCACTAATTCATAAAGGACTCTTAGACACCAGCTGGTGAACATCTCCTTTCAACAATTTCTCCAGAATGAG-AAGAGCACATAAGCTACAGGAGAACTACGAAGTATGTGGATAAGTAT-TCACAGCTTTTG------TGAATGTCTAAGAATGTCATACTGTGAAATGTActagtactgttttaatttttttgttcccCCGTACCTATCCCCCTAAAAGAAAACACCCCACAtaacctcttctcttttctttgagacatttttttttaattgtagggAAAAACAGCTGTGTGAC-AAATAGGCTAAGAGATATGTATTTGGGGTATGTGAGACCTGAGCGTGTGTGAATATTCACATGCATT----------------TAAGCATGCTCATCAACTAGTTTGCTGTTCT-------ATTTTCTCATCAGAGAAAATGGATGAGCAATCAGCTTAAGAAGGGTTTCTCAATGCCTTGAGAAACCCGGGACAGCCCTGGCCATGGTTTG-AAGTGTCTGCCTAGTCCAGAGCCATGGCTGGCAGGATGTTGAGGCAAGATCCCAAGATCTCAAGATCCCTGGCACGCTTGT----TCCCCTCAAGTGCACTGGGGATTTGTAAA---GATGCGGTACACTCACTCCTTTGATTAGGTTACACTACAAGGCCTATGCAGTGGAATAATTTCCCCTATAATTCCATTCACTTAAATATAAGGCTGAATAGCAACAGCAAGGACAGCAGTAA-CAGTATCAGTAGTCACAGCAGCAGTTTACAGAGAAGCTCT---GCTGGCTTCCGAGAAGTAAATCCCATGTTCGTtt

a score=37873
s chr3           157533975 3697 + 160039680 [encoded data, 4382 characters]
s HiC_scaffold_1 144773152 4112 + 233722169 [encoded data, 4382 characters]

a score=18952
s chr3           157540320 938 + 160039680 CTAGAAGAATTTTAATGGAG-----AGGAAATTCCTTTTAAAACTTTGTCATAGTAGAAA---AAGATGTTTTACAT--ATATATTTCATGAATGACCTGCCATGAGAAATTTTTAAGTTGTAAACATCTGTAGGTAT-GCTGTG-CTTTACAACTAAAGCAGATCCTACTT---GTTTTCTATCGTAGATTTTAA-CTTGTAAAAGACTAGTAAT----TAGTTACGTGAATGACCACCATTTATTAGATCTTCATTTTATATTAGCTGGGAAAAGTGAGCATAATTTTGATATTTGAGTTGTTACAGCAATTTATACTCTCTTTTTAAAGGATATGGAGGTGGTTTTAATGAAAGAGAGAATGTTGAATACATAGAAAGAGAAGAATCTGATGGGGAATATGATGAGGTAAGCTCTCAGATATGTATATTTTGAGTAGAGAAATGTTAATACCTGGAGTTTAGAAAAGCTGTATGTGCATGGATGTATGCATGTACGGTATAGGGGGTACATGTGCCCTTGTGTGTATCTGTAGAGGATGTTGGATGATAGTtctcattgagcctataattcaaccattggctggactggtggaccagtgggaaaatcctccatctctacctgcaagtacagaga-------ttacatgctcacatttccacatctgcttttccacaagggtacAAATAGGCTTTGAAAATAAAATATTTTTATGTGTTTTCAGCCTGTCTATTTTGGGTTTTTTTTTTCCCCCTCTAGTTTGGACGTAAAAAGAAAAAATACAGGGGGAAAGCAGTTGGCCCTGCATCTATATTAAAGGAAGTTGAAGATAAAGAGTCAGAGGGAGAAGAAGAGGATGAGGATGAAGATCTATCTAAGTATAAGCTAGATGAGGTAA-TGGTCCCTGTCCTCTCCCCTCACCTTTATTTACTGGAACTATTCTGAAGCAAAAGATGCTTTTGA
s HiC_scaffold_1 144779460 763 + 233722169 CTAGAAGAATTATGATACAGTATTGacaaatgttcttttaaaacatgattatAGCAGAagcttaaaatgttttctatttatatatatCATAAATTTTTTAT-AGAAGACAATTTGAAGTTGAAGAGAGTTAAAAATATAGTCGTGACTTTATAGCTGAGATATATA--ACTTTGAGGCTGGTCTGAGAGGTTACAAGCTTTTAAAAGATTAGAAATATACCAGGTAGATAGGCTACTGCCATTCATTAGATCTT------ATGTtttttgcagataatgtgaata-tCATGTTACTCAAATG--------AATTCTTACATTCCTTTTTTAGGATATGGTGGTGGtttcaatgaaagagaaaatgttgaGTATATAGAAAGAGAAGAATCTGATGGAGAATATGATGAGGTAAG---TCATATAAGTATAT------------------------------------------------------------------------------------------------------------AGATTGAATACTAGTA-----------------------------------GGAGGATATGTTAGAAAAT-----ATCTTTA-------GTGCAGAGgagtatttttaaatactt-catttaaatat-----------------tagaaacaattttttaaaatactg-atttcaaTGCATTTTCAGCTTACAAAATGTTGAAACTATTTTTC----TGTAGTTTGGGcgtaaaaagaaaaagtacagagGGAAGGCAGTTGGTCCTGCGTCTATATTAAAGGAAGTTGATGATAAAGAatcagagggagaagaagaagatgaGGATGCAGATCTTTCTAAATATAAATTAGATGAGGTAAGCAGTTTCCA-CGTCCATCTTGCCCTTGTCTTACGTGAGCCACTAT---GCGATGAGTGCTTTTGA

a score=191862
s chr3           157541305 7285 + 160039680 [encoded data, 8132 characters]
s HiC_scaffold_1 144780737 7596 + 233722169 [encoded data, 8132 characters]

a score=44587
s chr3           157566782  908 + 160039680 CCCACACCGCCCTTCGCCTGCCTACTCGCAGCA--------CCGCCCCTCGAGCTCCAAGGC-GCGGGAGGAGCCTCGCGCGGCGTCGGGCGGCGCCTGTCC--AGTCCCCG-----CAGCCTAGCGCGG--GAGGCGGCGGGCG-------------ATGGAGAGCAGAGCCTGGGCTCCGGCTGT--------------------CCCCCAGTGCACTCTGC---TGCTATCCC------------------------------GCAGCT----------------GAGCCGGGAGGCTCCGGCCCCGTGCGCCCTACCGTGGCCCCGCCACTATGGCT--------AGCATGTGGGCGCCGGAGCACTCTGCTGAAGCGCACAGCAACCTG--TCAAGTACTACCG----------ACGACTGCGGCTCCGTGTCCGTGGCCTTTCCCATCACCATGATGGTCACTGGCTTCGTGGGCAACGCGCTGGCCATGCTGCTCGTGTCGCGCAGCTACCGGCGCCGCGAGAGCAAGCGCAAGAAGTCTTTCCTGCTGTGCATTGGCTGGCTGGCGCTCACCGACTTAGTGGGGCAGCTCCTGACCAGCCCGGTGGTCATCCTCGTGTACCTGTCACAGCGACGCTGGGAGCAGCTCGACCCATCGGGGCGTCTGTGCACCTTCTTCGGGCTAACCATGACAGTGTTCGGGCTATCCTCGCTCCTGGTGGCCAGCGCCATGGCCGTGGAGCGCGCCCTGGCCATCCGTGCGCCGCACTGGTATGCCAGCCACATGAAGACTCGCGCCACGCGCGCGGTACTGCTGGGCGTGTGGCTGTCTGTGCTCGCCTTCGCGCTGCTGCCGGTGCTGGGCGTGGGCCGCTACAGCGTGCAGTGGCCGGGCACGTGGTGCTTCATCAGCACCGGGCCGGCGGGCAACGAGACAGACCCTGCGCGCGAGCC------GGGCAGCGTGGCCTTTGCCTCCGCCTTCGCCT--GCTTGGGCTTGCTGGCTCTGGTGGTGACCTTTGCCT
s HiC_scaffold_1 144798816 1032 + 233722169 CTCCCgcctcctcccccttccctgcCCACGGCCGGGGCGCCCCGCCCCTCGGCCTTATAGCTAGCGGGGCGGGCACCGCGGCGCCCGGAGCGGCGCCGTCTCTGGGGCCCCGATCGCCGGCCGCGTGCGGACGAGGAGCCGGCCGCGCGCCCCTCACAATGGAGCGCAG--CCCGGGTCCGGGTCGGGTCGCCGCCACCCCAGGCCACCGCCAGCGCCCTACGCGCCCGCTCTCCCTGCCTGTGCGCTGCGGGCCCCGACGCGTCCGCACCTCGAAGCCGACATGAAGGAGCCCAGGGGCGACGGCGG-GGGCGCCCCCTTCTGCACCCGCCTCAACCACTCGGACCCCGGCATGTGGGCGCCCGAGCGCTCGGCCGAGGCTCGGAGCAACCTGAGCCGAGCGCCGCCGGGGCCGGGCGAGGACTGCGGCTCCGTGTCGGTGGCTTTCCCCATCACCATGATGCTCACGGGCTTCGTGGGCAACGCGCTGGCCATGCTGCTCGTGTCGCGGAGCTACCGGCGCCGGGAGAGCAAGCGCAAGAAGTCCTTCCTGCTGTGCATCGGCTGGCTGGCGCTAACCGACCTGGTCGGCCAGCTGCTCACCAGCCCAGTGGTCATCGTCGTGTACCTGTCGCAGCAGCGCTGGGAGCAGCACGACCCGTCGGGCCGGCTGTGCACCTTCTTCGGCCTCACCATGACGGTCTTTGGGTTGTCCTCGCTCTTCATCGCCAGCGCCATGGCCGTCGAGCGCGCGCTGGCCATCCGCGCGCCGCACTGGTATGCGAGCCACATGAAGACGCGCGCCACGCGCGCCGTGCTGCTCGGCGTGTGGCTGGCCGGGCTCGCCTTTGCCCTGCTGCCGGTGCTGGGCGTGGGTCAGTACACTGTCCAGTGGCCTGGGACATGGTGCTTCATCAGCACCGCACGAGGAGGCAACGGGACCGGCTCCTCCTCCGCGCCCAACAGGGGCAACCTCTTCTTTGCCTCCACCTTCGCCTTCGCTGGGGCTC-CTGGCGCTGACGGTCACCTTTACCT

a score=8274
s chr3           157568467 774 + 160039680 GACAGGAGGTAAGGGTTTCTCGGTCCTTGGCATCGTATCCATCACAGAACTACCCAGAGGAAGCCATGCTTCCGCATGCTCCCTATCCCCAACTCTCACATGGTGTTTTTGAGGGTTTTTTTTT------TTTTCCTGTGGCACTTGTAGCTAGAAACTTCTGTGGATAAGTGTGGTTTGCTAATTGGCAAAGAATGGATGCTTACTTTGGGCTCACACAGCCTGGCTTAATG-----TGCAGA-GGAGCATCCCCATGGTGTGGTACAGTTATTGACCATTACATAGCAGACTCG---ATtctctct-----------ctctctct-----------------ctctctctctctctctctctctccctctctctctctctg------tctgtcttacatctctctctcccATTTACATAT------ACAGTTCAGTGAGGTCAGCGACAT--GTTGA----------TGTGCCACATAAGGTTAATCTCCTT-------TCAAATGGTTATATGGTTCTTTTCTTTACCCACC-------------CTCCCTGAGTATGTAT---GACAAGCCTTAGAG-----ATCCCTGCGGTAACTGGCCTGGAGTTGTACAGACAGGACA-GTGCTGCTGGGACCTAACTGCTCACAAGTGACTGAGTAGT----------CACTGTTCTCCAGGAGCTGGAGCACAGGCTGATGTCATCACCATGTTTATCAGAACCAGCACCAATTTTAGAC--ATTTACTGCTGTGGTTGAGGAATGGGGTGTAGGTGGCCAAGCAGAGGGAAATGAAGCTCCCAGAGTAAACACTTCACTGA-ACCAGCATGGCTTTAGAGGCAAACAGTGT-CCCAACATAGCACAACTGTCA
s HiC_scaffold_1 144800750 860 + 233722169 GGTAGGAGATAAGGGGCTCCC--CTCTTCCCAGCTTAGC-ACCCCAGCGCTCCACAGGGGAG--CATGCTT--GAGTGCCTCCTACCCCCT-TTTTctcagggtattttt-----tttttttttgaggttttctTCTGGGGCGTTTA-AGCTCCAAAGTTGTGTGAGTACCTCCG-TTTCCTGATTGCGGAAGAATGGGCGCTTACTTAGGATGCAGGCAGCGGAGCTAGGTAGACATTGCAGACAGAGCGCCCCAATTAGG-GTCACAGCGCTCACTGATTGTATATTGGACTTGGAAACTTTCTATACAGTTGTGGACAACCTCTGAAACACAGGGAGGGAGTTTGCAAAATTCATCACATAGTTGTTTGAtcaatttgtaataaaatatgcataacatCAAAGTTGCTATTTTAACTAAGGTAAAAGAGTTCGGTGACTTTAAAGACATTGATTGACAGGCAGTGCTGTGCCCTGTTCAGTTTTTTGTCCTGAAGGACTGAGATG--TATGTAGTTCCTTTCTCTCCCCTACGGTTGACAGCTGAATCCCTGTGTGTAAATAGGGAGAGACCTTTGAACACAAATCTTGGCT----CCAGATCAGTGATGTGGACCCAGGAGGCGTCACGCTGGGAGGGAACTACCCACAAGTCCCCGTGTAGTGTAGTGGCAGCTCTGTGTTCTGTGAGCGGGAACTCGGAGTGATGTCATCATTTGGTTTATCACAACCAACACCAATTTTAGACATATTTACTTCTATGGTTGAGGAATGGAGTATCTTCGGTCAGACCAAAGATAA-AAAGCTCTCAACAT-AACATTGGAATGAGGGTAACTTAACTGTAAAGGCAAAGGGAGTACATGAAGTTTCACAATTGTCA

a score=35966
s chr3           157579176 3668 + 160039680 [encoded data, 4328 characters]
s HiC_scaffold_1 144811709 4070 + 233722169 [encoded data, 4328 characters]

a score=11824
s chr3           157598621 562 + 160039680 GTGTTTACATCAGATAAA-CAAGGGTAGCCTCAGAAACAGCAGTGTGGGACCCAGAGGTGACCAAACTAGTTAAGCAGAGAGAACAGGGCAGCAGCT---TGGAGTGGTGGC-TGCCCTTTCCTAATTC---TCCAGGG--------------ATTCTCCACATCATGCAATTACAGGCTTGAAAGGGCCCAAACTGGTTTTCAGTCTA---ATAGAGCAACAAGTTCATCAAAGAATGGGAATTTCCAGTGGAGCAGGTTGCACTACTGTAGCCCAACCAAG---TCCAGAGCA---AAACACCATAGATAAAAATTGGCTTATGAAGAAATTTCCCTTAAAGAATTACATTAGGAATGAAGTAAGGATGTATAAACGTCCCATCATGGCGCCTAGGAGCAGCTTGCCAGTTTTAATTTCTGCTACACA---AATTTGTTTGTCTGGGTATAGTTATTTGTCATTCTCAGTGATACA-ATTGCCCAACAACTCAAGGCAAGGCACATCTGAAACATGAAGATTAGTTCTGAAAATTTCT-AAGTATGTGAAGTCCAAACT-TACTGCCACAAAACAAAATCCAAGTGCAGAATATGAA
s HiC_scaffold_1 144825261 567 + 233722169 GTGCTTAGATTAGATGGGGCTAAGGAAGCTTCTGACATAG------GATACTCTGGGCTGCCGAGATTTGACAAGCAGAG-GACTAAGCTGAGACCTCACTGGAAAGGtagcattttcttctttaatccaCGCCCAGGCGCCTTCCCATTAACATCCTTCAGATTACACAGTTAAGTGGCTTAAAGGGCGCTGCCTGGTTT-CAGTGTATGTATA-AGCAACACTTCTATCTAGG----GGAATTTCCAGTAGAACAAGTCGTTCTCCTGTAGCCTAATAGAGGATTATAGAGAACAGAAACATCCTAGATAAAACTTGGCTTGTTAGGAAATTTCTCTTAAAGACTCACATTAGGAACAAACAGGCAGAGTGTAAACACCCCATGATGGAGCCCGAGGGTAGCTAACTAATTTTATTCCCTCCCCCACCGCTAACTAGCTTTTCAGAGTTT------------CCTCCATAGGCACATGTGGTCCATCACC------CGAGGCACTTTTGAAGCA-AAAGCGAAGTACTAAAGATTTCTCAAATCTGTGATTTTCACATTCTGCTGCAATGAAATGAAATGCAAACGCAAAATATTAA

a score=14111
s chr3           157599208 951 + 160039680 atGATTTCTGGGAAGAACTGGTGTGGCCT--CCCGGGTGCCAGCTATTGCTTAGAGAGCTTA--TTACTAATTTTAGAATCACTGCATTGCCAGTGGGAAATTATAGGAAATTACCAACCACTAACCAGTGTATGGCACATGAAACCTATGCTAGCCCCATAAAAATAATGTTAAATTATAAGTCTCATAAAATTAAGTTATTAAGCAGGTCTTTGCAAAATGGCTAAAATCTCATTTTAATAAATCATGTTATAAATATTCATGACCACAAAGAGTTTAAGAAATGTAATACTTCATTTTATAAAAGAAAATCTTCatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttataCAAGCAGTTTTAAGT--------AGCATGGTCAGAACAATTCCTGAAAAGCAGTGAGGGGCCAAATACATTTGGCTTTTAGATGATTGCACTTTACAAGGTTCTGCGAGAGGAAGGCAGAACTTTTACAGTTGTTTAAAATAAGGGGGAAGA-GGATTAGAG----TGTTTGT-TACAAAAACAAATGGATTGAAAAGAGCAGTTTTAAAGCTTCTAATCAAAT----ACACTGAGCTCCTATCCACACACTGCTGAGTAGGATGCATTCAGCTATGTCAGTTGTCAACATAGAAATCGAGGTCACTGGGGCAGGAGTTCATGAGGATGTTTTACTTTTATCTCATAGTTCTTGATAATGCT----CCTGAGAAAGTGAAGACTGTAAACAAGC------------TTATTCCCTACGCAAGAACAGAGTTTTTAC---------TCCTCATG--CTCTTTATTGTTTATTGGAGCCCAGTATGGGGAGAGAtactaattttccactgctgctgtaacaaattattagatgcttggaacctcagaagccacagaactgtgtctcagagctctgtaggttt---gtctgacatgggtgtcccggggctgcagtcagtgtgtcca
s HiC_scaffold_1 144826661 857 + 233722169 ATGATTTCCTAGAAAAGCTGGAGTATCTCTACTCATGTGCCAGCTATTGCTTACTGAGGTTGGCTTCCTAATTTCATAATCATGGTATCATCAGTAGGAAATTACAGTG----------CTCTACACAATGCAAGGCAAATGAAACCTACATTAGCTTTAGAACATTAATCTTAAATAATTAGCCTCATAAAA-------ATTGA------CTTT--AAAATAACTGAAaccttattttaataaataattttgtaaattttcctGATCATAA-----TAGAGAAATTTAA---TTTATGCtgggaaatgaaa-------------------------------------------------------atacaacttt---cAGGAGGTTTTAAATGATTCGACAGTGTGGCCAGAGAGCTTCACAGAAGGTGGTAAA------------------CCTTAGATG------------AAGAAGTTAGGATAGCTGGACTAAAATTTTTCAGTAGTTTATAGAATGAGGAAAACTGGGTTAATGATCATGTTTTTGTATAAAGGTGACTAAGTTGAAAATAGTGATTTTTGTACCTTTTAGTAATTTTGGACCTTGAAATCTAACT-----------------GATGC--TCCTTTTTGCATGTTGCAAATTTAGAAATTGAGATAATGTAAGTAAGAGTTGGCGAGA--TTTTTACTTT--ATTCATACTTTTTGAAAATGCTTCCCCCCCCACAAGTGAAGAAGGC-AACAAGCTGGCCTGAATGTTTTATCAGTGAGAGAGAGCAGATTGCTTTCATGCTGGTGCCCTCCTGTCCCCCTTAACATTTGCTGCAGCTCAGTATGTGGAT-GTTATTAGTTCTCTGCCATTGCTGTAACAAATGACTGTGAACTCAAAGGGTTAACAACTAGAAGAGTTTCTCTTACAGCTCTGTAGGTTGGAAGTCTGTGCTGGGTTTCCCTGGAATGAAATTAAGGTGCCCA

a score=73682
s chr3           157604398 2966 + 160039680 AATAAACTTAAATTTGAATTTGGCTCAGCCATTTCACATCATTAAATTATAGTTTTTG---AAATTGTAAAAAGGAAGTGGTAATAGTCCTAACCTTTAA--GTTTACTAAAC-CATGTGAATAC-TGTCCCACAGTACCCAC---ACTAGAGAAACAAAAGCCACCGATG--------------------GCTTTCTTCTA-CATCTT-----TATTCAATGAAAGACTTTAATTAGAATTACTGACATTTATCCTTA-CTGTGTTCTCAGATCATTATT----TCTGAAGTCTCATTTGGGTGCCAGCCTACTG-----------------CTGAATTTAGCTAATTTTGAGATGTATTATATCCAGGCTTCTTAAATTTCAAAGGCCAAGAACCAAGAGCCCATGTG----TTTTACAAAACTATGTCCTGTCAAATCTCCTAAAA--TGTGGGGAAATTCATAGAACAGGCTC-AACTTAGAGCAGCAATCTGTTAC-------AGTGTCTGGATGGA-CA-CTCAATTCAGCGTTCAGCTGTGAGCTTA-TGAAAATACAGGCTGTGCCAGGTGCTCTGCAGAGA---TGTGTGTGACTTTGTCAAGCTTTGCAACAACTCTTTGTGCTTCTTCCTTAGATAATGATGTTGAAAATGATCTTCAATCAGATGTCGGTTGAGCAATGCAAGACACAGATGGGAAAGGAGAAGGAGTGCAATTCCTTTCTAATTGCAGTTCGCCTGGCTTCGCTGAACCAGATCTTGGATCCCTGGGTTTATCTGCTGCTAAGAAAGATCCTTCTTCGGAAGTTCTGCCAGGTAGCAAACGCTGTCTCCAGTTGCTCTAGTGATGGACAGAAAGGGCAGGCCATCTCATTGTCTAATGAAGTAGTACAGCCAGGGCCATGAGAGAGAACAC--AGCCAATGAACATAGACACAGTTTTTG-CAGCCAATGTCCCTAACCCTTATGGACTGAGGCATCTCTGGTATGCTGCTGTTTATGTTTTGGAGTGGAATTTTTGATATAAAGCTAGATGGTCTGAGAAACATAGATAATCCTTTCTGTGCCAAAA-TCCTGAAACACAAACAAAGGGAAATCTGTTAATAACACTCTAGCATTT-TGAGTCTTTGCCAGAGTTAACTGAATATGGGGTTATTTATGTGAAG-AAACACTG--ATAAATGACCTTGAGATACTTGGGGGGTAAGGATGGTTGCAGCCACAGCACACTGTGTGGGGACTTGGGA-GTGTAA--------ACCCCTG--GGCAAGGAATGAAGCCACAGGGCTGATTTGTGTTGTCTGAGGACATTGGTC----ATGTTCTCTTTCATCATTGTCTCTGTAACTTTTCTGACACACTTTTTCCACTCAAAA-TTTAAAGCATCTAATTGGGTTTTTGAGAATGTATAACATATCCATA-TATTTATTGTCCTGATGCTATTCAAATATTGTTCAATAGATT--ACTAGCTCATAACTTTATAAAACTTAA--CTTTGGTTGGGTTGGT------ATGGAAGTTTATTCCTTAATTGAATAAGAGACAACTCCACTTGCTGCAAACAAGAC--AGTTTATGTCTGCCCTCTGTTTCAGAATGTTCTTTCCTTTGAATACATTTTGCATTCTTAGAAGCCTGGAGGGAAGTCCTA----ACTGATCTATGAGAGTC--ATGAACTGTATTTCAGAATGCTGCCTAAAGGCTGGATTGAGAACTGAGGGTTAGTCCTGTTCCCAGTGTTCTCT-----------------------------GGTCTTTAAATACCAACTCTGACTCTAGAACAAATAGAAATTTAGAAA-CTAAATAAAGATTTGCCATAGTTTGGCTTTCTTGTAAGATAGGAATACTAATGA---TGACTTTTTA--GCCGTTGCCCTGCCCTTGGGCTAGCACTCTCACTTAGCTCTGTGGCTAGGTTTGCTTTTCA---------CACAGCTTACAAGGGCACAGG-CTTGGCCCTTTGGCTTAATGTCTCCTTGTCTCACAGGTAAATCACAAGCAGGAGCTTTGGGATTCTAGAGCTTAAAAGTTACCCCACAAACATTGTGTTCCTT-----CAGGACAATCCCAGACAACTGTCTTTATTCTTTGGCACCCTCCTTTTGCAAGTTCATTAATAATTAATGTGAAGATTCTGAT-----TTGTACTTTATTGTTTTCT--AGTTTCTCCAAAGCTGAAGATTTCTTTCAGCTTCCTAC-ATAATGGCATTTT--CTTGTCATTAGTACCAGTTTG-GATGAGGGTTGATTGTAACTGTTACACTGTATCTGTTAGATGAATTATGCTTACCGGCCTAGGACAGTTAGGA-TAATCAGTCTAAAAGATCAGGTCAAACTGAGTCAGAACTTAAAGTCTAGTGGAGGCACTGCCATCATCCAGAATGG-CTCCATAATC-CAGATGTGAAAATAAAGACAAGAACAAACCTATAC-------CTGTTATTAAAATTTCCCTTT--CATATGATTTA---------------------TAGAGTATAAGACAAAA---GTCTCCTCCCCCAAT--AATTAAATGACCTTATAACAAAAA--GGCTTTGCTTTGGGGTACTCCTGAGCCCTCTTGTGAT---CAGGTAGACACA----CAGC-TGGGTTTGAGTGGTG-AAGTGTAATTTTAATATTTCTTCCAACACTTACTGTAGCACCTGAAATATAGGACTT-TCCAATAAACA-TTGTTAGATGGATGAGTGAATGAGATTCTGCCAAACT-TCTGCT---------------TTTGACACATTTG---------------TTATAGCTCGCCCAACCTGTGAAGCAAATGATTT---CTTATTTAGTTGAGTAAACAGAGATATGCCTTTAGAGGCAT-TTGCTGTGTTGTTTTATAGCATGGTG--TCATTTGTGTTAATAATCTAAAGGATATATTTCCAACTTGTAAAGGGAGTCACTATGAAAAGAACATCAGTTCTCATCAAGCTATAAAAC---------CAGAAGAGGTTGAAACTTATTCTAGGCAATAAAATCAGTTCCTGCCCAGGGATTCCATGGTAGGAGTGAATGGATGGCTACTTTTGAACAAGCTTCAAAGGAGGCAGCAAGGGAAGAAACTGTGAGGTT------TTGTTTTTGTTTTTTAACCTGGGAAGCCATTGGCAAGTCCAGGATGAGAA
s HiC_scaffold_1 144831527 3156 + 233722169 AATGAACTTAGATTTGAGTTTAAATTAGTCATTTTATATCAGTAACTCTTGGTTTGTGTAAAAAGTGTAAAAAGAATGTAATAGTAGCATCCATCTTGCAttgttttttaaacatatatgaaaaaatttgaaACGGTGACTGCTAAATTAAAGATGCAGAAAATACTAATAATAGCAGTGACATTATAATTGCTTTCTCCTATCATTCTGCTATTCTTTAGTAACTTCTTCTAGTTAGAAATATTGAAGGTTAAGTTCAACTATGTTCT--GATTATTGTTGAACTGTTGACTGTCATTTGGATCTCAATCTACTGGTACTTTTAGCAACAAGATGGATTTCACTAATTTCGAAATGTGGTATTTTCAAGCTTCTTAAATTCCAAGAACCAAGAGCTGAGAACATgtgtgcttattttaaaaagttataccaTATCGAACAACAAAAAAAGTGTGCAAAAATCCTTAGGAATGTCTTTAATTCAAGACAGTTTTCTGTGATGTTAAATAATGTTTGAATTAAGCATCTCAATTCAGCA-------ACGAACGTACTGAAAATTCAATATCTGCAGAGTATTGTGCAGAGGAAGTTTATATGACTTTACTGATCTTTGGaa-aattatttatgcttttttcttaGATAATGATGTTGAGAATGATCTTCAATCAGACCTCAGTCGAGCACTGCAAGACGCAGactgaaaagcagaaagaatgCCACTTCTTCTTAATAGCGGTTCGTCTGGCTTCACTGAACCAGATTTTGGATCCCTGGGTTTATCTGCTGCTAAGAAAGATCCTCCTTCGAAAGTTTTGCCAGGTAGCAAATGCTGTCTCCAGCTGCTCTAATGATGGACAGAAGGGCCAGCCCATCTCACTATCTAATGAAATAATCCAGACGGGGGCATGAAAGAGAACACTTAACCAACGTGCATGTTCACAGCTTTTGACAAAGAATATTTCCAAACCTTGTGAAATTGGGCATCTCTGGCATGCCATTGTTTATATGCGGAAATGGAATTTTTGATA-AAAGCTAAATGGTCCGAGAGCCATAGATAATCCCTTATGTGCCAAAAGTACTGaaacataaacaaagaaaaatatattaataacagTCTAGTGTTTCTGGGTGTCTGCGATTTGCAGCTGGATATGTGATTATTTATGTGATGAAAACATTATTATAAATGATCTTGACCTATTGGGAAGATAAGAACAGTTCATATTCCAATATACTAAGTG----CTTGGGATGTTTAACCACATTTATCACTGAAGACAAGGGGAGG------AGAGCAGTTCGTTTTTGTTAAGGGATGTTGGTCTTTTGTGTTCTCTTTCAT-----TCTCTATCACT------------TTTTCCCACTTAGGGCTTTAAAACCACAGTGTAGG---TGGAGA----AAAATGTATCTACAGCATTCATTAATGTGATGCTATTTAAGCGTTGCTCAGGATATTCAGTTAGCT-----CCTCCCAAAGTTTGGGTTTTTGGCTGGGTTGGTTTCTGGAAAGAAGT------CTTATCTGCAGAAGAGTCAGTTCTATTTGTGGCCAATGTGGTGGAGTTTGTGGAAGCTCCAAACT---AACTGTTCTTTCTTCTGGATCCATTTTGCATTCCTATAACGCTGGA--GAAGACGTACAAGACTGATCTACGGGAGTCAGAGAAGCAGTTTTTCAGGATGCTATTTTAGGGACTGATATGACACCAAATTTTAGTAttcttcctctcattttttttccacCAGAAAAATTCTCCAGGCTTTTGGGCCTTTAAATACCAACCttaattctaaaacaaataaatattcagaaagtTCAATAAGGTCTTTCCATAGCTTGGTCTATTTATAGGTTCAGAAAATTAATAACATTGACCTCTCACGGCTCCTTCTCTGACCT--------CCCCTGAAAGTAgctttatgtaaatatttattgttcatttctttattaCGGTCCACATGAATACAATCCCCAGTAGCTAGGCTTAGCATCTCACTGT---ACAGGTAAACAACTGTACTAAGTTTGGGAATTGT--TCCTTAACCCCCGTCCCCAAATGACAGCAATCCTTTAAGCTAAGACACTATGAAATACTTGTC-GTATGCCTTGGTGTATTCCCTTTGTAAACATGTTAAATTTTCTTGTGAATATTTGGATGTATAGTGTATTTAATTGCTTCCTCAGTTTTTTTTGCAGCTTAAGATTTATTTATACTTCTTATAacaatgtcatttttctttgtgcttaGTACGCATTTGTGGgaagaattatttttaacatgaagAATATATCTATCAGATTAA-TGTGTACACCAGTGTAGGTCAGTCAGGAGTAATCAATTTAAATGACCATGTCAAGCTGAGTTAGAAGACAAAATC--GCTGA-GTGTTCATATAATTAAGGATGGTTTCCTTGGTCGCAGGTTTtcgaaaaaata-agaaaaaaatctatattaaaACACTACCA-TAAAATCTCTCTCTGCCATAGAATTTGGCCAAGTCATTGGTCATTTCTTGGAATATAGGGAAAAAACTATCTAATTTTTAAGTGCATTTAAATAATCTTAACACCAAAAATGATTTCCCTCTGGAGTTCTCCTCTGGCCCTTGGTTATAGCCAGATAGACAAACCTGCAGTGTGGGCCTGAGTGATATGAGTAAAATTGGGTTGTTCCTTCCAGTACCTCATATAGTATCCAAGATATGGAAATTGCCCAGTGAATATTTgctcagtgaatgaatgaataaaagtcTGCCCAACTGTGTGCTCCCTGGTGAGGCCCATGCCACACAGCTGAAGCAGTTCCTGCCATCACAGTCCATTAAGTTGATAAAGTAAATGATTTCTGCTTATTTAATTATAGATGTACGAATTTTTCTTCAAAGCTGTAGTGTCATGCTGTTGCCCAGCAAATTGGTTTATTTGTATTAATAAATTAGGAGACATATTTCCAAATGGTAATGGAGATGGCTGTCAAAAGAACATAATTTTTCATTATATCAAAAAGTACAGAAAGACATAAAAGCCTGAAATGT------GACTACATAATAAATCCCTTCCCAGAGGATATATGGTACGAGTAGATAAACGACTGTTTTAGGACCAGCTTGGA--GAGGAGATGAAGGAC-AAATTATATAAATAGCAcatagcttttgtttttca-----ggcAGCCTTTTGTTGGTCTAGGGAAAGAA

a score=31752
s chr3           157607932 3706 + 160039680 [encoded data, 4240 characters]
s HiC_scaffold_1 144834827 3771 + 233722169 [encoded data, 4240 characters]

a score=7609
s chr3           157612906 365 + 160039680 TGTGTGGCTGCA--AAAATGCAGCGCTACCGTGTCTATAGTGCCTGGGTTAC-AGCAGCCT-GACCAGCTTCTGTAAGCTCATAAGCCTATTCATAGAAGGGGAGGTGCACTCTCTCAGG-AGTATTGTCTTTCTACTGACGCC-CTAACATC-----------TATTCTCGTGTCTCTATGAGGGATTGCTAATGGGAGTTTCTTT--------------------CGTGTTTTAATTCACTGTAATTAAGGACATATTTCCTGGCAGGTGC--------------------CTTGTAGAGCTTTTCTTTAAAGAGTCTTTCATCT----------GCCTGGTGTGTGTAAGATAACCACAGAACATGCATTTCCTCC-TAAGATGATTTGTATCATAGCTGA-TAGATATTGAGGAAATGTCTCTGGATGAA
s HiC_scaffold_1 144839267 433 + 233722169 TATCTGACTGCACAAAAATGTGGCGCTACCACTCCAACAATGCCTGGATCACCAACAGCCCCGATCAGCTTCCGTAATCACATAAACCTATTCACAGACAGCGAGGTACAGTTTCTTAGATGGGATCACCTTTCCACTGATGCCTCCAATCCCCTAAGGAGCCATAGGGTTATATGTCTTAGAGAAGTGTCTAAAGTGAGTCTCTTTTTCCCAGGGCTCATAAAAACTGTGATAGAATTCTCTATAATTAAGTGCACATTTCCAGAAAGGTGATGGCATGGGGGGAGAACTAGTTTATGAAGCTTTtatttaatggttttttttttttttttgcatattttggtCTATATGACAGAGCTCTAAAAGCTTTGTGTCATCTAAAAGATGATGTTTATCAAAGAGCATTAAACAGTGAGGCAG-ACATCTGAGTGAA

a score=22867
s chr3           157656332 4629 + 160039680 [encoded data, 5728 characters]
s HiC_scaffold_1 144879723 5389 + 233722169 [encoded data, 5728 characters]

a score=23139
s chr3           157684669 2217 + 160039680 TTTTTTCTCTTCCTAGTTCACTTTCCATCCTTCTCAACCT-------------AGTAAAAGCTGAGATGTCCCCATGCTTTCCTTCTTCAGAGGTTTCTTCAAGTATCTTAG--GTGTCATTTATTTATCCCATGGCTTTTCTTTCTCTAGTCTCTATGCTCATCAACACCACTAAAAACACTCATGCAAGTAGAT----------------------------TCTGAATAACC-AAAGATAAGAAGCAGGACATAGCTATACTTATATTTGGAGTTCCAATGGCATGCCTCACTAAAGGTGTCCTCTAATGACCCATTTGTTTGTAAGATATGATGACAAATTGAAAACAGGACAATAAACGAAAGGACAAACATTACCAAC---AAGGACATTCTCTATGCAGAACTTACTTGTGAGTGTTTCTTGCTCAACATTAAGAATCAATTCAACAAAAGAAAAAAAAAGAATCAATTCAACTAATCCAGACAGTCCTCCCACTAAGGCATAGGTCCAGGTTCTATTTCTAACTTAAGCTAAAATACACTAAATAGCTGAATGATATATTTATTGCTATTTCTGTTTATAAGAACTGAGCAGGAGGAGAAAGAGCAGGCAAGGACAA---AGACACGTTGATGCTGCAGTCTACGTGTGTAATGAAGAGGT-------------TAGGGCTGCTTGGCTGTG---------------------AATGGTTTC------------------------TGCTTGA---------ATGT------------ACTTTTTCCTAAT-----CACAGGTAGATTTGAGATCCCTCGA-TCTGCTTTACTTTAAGACTGGAGCATTTTTGTGGCTTCACTGTAGGCATAGTTTTCTCCTTTTATCTCTATAATATGAACTATATTTCACATTGATGATGTTTTATATAAGACAGGTCTGTTTTCTCTAGTAATCAAAATGTATTCCAAATAGCCAATGAGAGACAGTCTAGAGCTGGCAGGCCAGGGGGGTGGCCAACCAGAGGAAGTCCTCACTTCAACAGCTGAGATTACAGCTTAACAGCAGTCCTTAACCTatgacccgttcacaagagccacctaagaccatcagaaaacacagatatttacattatgattcataacagtaacaaaaatagtgttataaagcagcatttttatggttgggggtcaccataacatgaggaactgtattaaagcattaggaagactggaaaccattgGCTTATAGGAAAACTTAAGTTGTGGAAGTTTTATTGCTGGGGGTGTTTTACAAAGCACACGTTGTA-AGTGTCAGGTGATGA--------GCAGAACGACTGTATTCGTGTCTGTCTTCACGTTA--GTGAGC-----------------ATGTGGTCTGTAG-----TCATGCATCTGCAAGGAGACCTGCCTCTCCTCATATGTTACCACGAGCAATGTTACAGTT-TGCCCTTTAAAAGTTATGTTGGGGTAAACAGATG---CTTTTGCTGAGATGGAAACTAAGTGAAAAGAGGCAAAGATTCCCAAGTGTAGAATTGATGCAGAA----------------TAGTGCAGATTAAAGGAAGGTCAGCTTTGCCAAACTAAATTTCCTCAGCATAAGTGGCCTGATT-CTGAAGGGAAGCTCGAAACATGGAGATACATGTGTCTGAGTCATGCTACAACATCTTGACATTGATATCCATTCTTTATG-GTACAG----------GATGCTAGAAGAG---AGACAGAAGATAACATGG------TAGACTAATTTTGC-----AGCTTTGGTC--AGTGTTGGCTGGGATTAGCTTGTATTACCTCGTTTTG--TGGTTAGTTCAGTGTGTGGTCTCATGAGT------TCCCTTTTCTAGATAATTAAGGGTTGGTTGCAATATTTTTA---ATGCCTTTGGATGAATT--------TAAAGTCATGTTTTTAAGCCACTGTGACAAGTGCGGGTCACTT-----ACATGCATAGTAGATCCTTGAAAGGAGTTGA-------TTTTCAACTGTGAGCTTTGATCAGGATTGAATTGTGTACCCTGTGGTAATACCCAATATTGTATGAACTGTGATAACTACCCAATAttggg--taaattatcgaacatttctgagccttacttttctcacctataggaaggaccctgtgatgctt-gtttacaacgttgtgaagtgaagtaagtaagaatctctgt---gagaTTGGCCTGGGTCCAGAACATAGAAGTTTTCCATAGAACGTGTAGTAGTGTACATTGTAAGGGAAATGAGGTGCTTACAGTTTGATTTTTAGTAGCAGGAGCTGT-CTGTTTTTCCATGTGGCTGTTGACTCCAACA-TTCAGAGCCTGTTTTAAATTTTCAGTCATCT-----ATCAG----------CTATTTCTAGTATCTGGAAATGTTGTCCCCTCTGGG
s HiC_scaffold_1 144904019 2238 + 233722169 tcttttctcttccttccttttccttcctccttccccagctcCCTTTTCTTTTGGACAATTTCTCCTATGTCACAACACCT--CTTCTGTAAAGCCTGCTTTGAATTTTTTGGAAGTTTCTACCACCAACCTCATCTCTCTGTGCCCACCAATCATTGTACTTAAGAACATCactgaaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgaatGCCTGAAAGACAGGAAGcagaatat--ttatatttgtatctcTAGTGCTAATACAATTCCTCACTAGAAACATTGTTACATGCCCCTATGAGTTTTAAAATCTCAtgttaagt-aaaaacaaaacaaaacataaaatca-aaacaatagcGATGAAAAGAGAATTCTAAAGATAGAA------TGCAGGTACT-------------------------------------AAATGGAAACTAACTAAATTAACCTACACTGACCTCCCACCAAACCACAACTGTGGGTTCTATTTATAATTTAGGCTAAACTACACTGCATAgtggaatgaaatatttattactgtttctgTTCAAAAGGACT------GAGGAGAAACAATAggcaaaaagaaaggagaaaggtgcCTGCT-CAGTCTAAGTGACTAAACAAAAGGTAGAAAAAAAGGCCAAGgaatatttacatttgtttttaaattatgaaatgaaaaagagtttCCCTGATGTCACATTAAGTGAGAAATTCCTGAAAAGAGATCATGTGATCTGTTAAGAACCCTTTCCTTATTTTTGCataagaatttattctttttctcaagTCCACTTGACTTGAAGATCAAGATA-TCTCATGGGATCACTAGGAACTTACTTCTTTTCTTTGGTCTCTAAAATGCTAATGCTATGCAACCTCAGCGGTGGATGGTGCAGGACTGTTCTGTTTAGACTGAGGACCAAAACATATCTCAGGGAGCCAGTAAGAG--GGCTTGGAGTTGCCAGGTCAGACGG--GGTCAGCTGGAGGCGGCATTGATCCTGACGGCTGACATTATGGCTT-------GTAATAAACTT--------------------------GACCAAC-----------------------TGTTTcttg-------------------tgtaaa-------ttttattgttt----------------------ctgttgtaA------------------------TGGCT---------GCTTCTGTCAGGAAAGACCTG-----GAGTGTGTTTTAGAAAGCATGCTTTTCATAATTCAAAATGATAAATCATTTTACGTAACTACcacatttatttatgtcttcacATCAAGGTGGACAAATTTTTAGGAAGGTGATGTTGCATGCAGCATCTTCACACAGCTGTAAAGAAGCCTAACCTTCTTCATGTCCATCCAtgaacattttcatatttctttagttttatagCTAAGCTGAAG-AAATAGAGGCCACTTTTGCTGATATGGACATGAACCAGGGAGAAAATGAGTCTTCCAG--AAAGGGTTGATGGAAAACTGTAAAGTGAGAGGGtggaaaagattaaaagaagCTCTTCTTTGCCAAACTCCATTTCCTCAGTAGAAGTAGCCAAATTCCTGAAGTGGAGCC--AGTCATGCTgagatttgtgttttatttttgctgcaACATCTTGATGATAATATATATCACTCGTGTGTACAGTCAGAGACACAAGActgggaaagaaaagacagaaaaagaataggATTCCATAGGTTACTTGCACTGGTTAACATTCATCAAAGTCTTGGCTGGAGTCA--TGGGTTCAGATCATTTGGCCTGGACATGGTATAGTGTGACCTTGAAGGTAACTTCCCCCCTTTCCAGATACCTAAGGCctggttttga-atttttatctgttcctct-gaTGAAATAGggttaataaaattatattt---agtcACAGTGATATGTATGGACCACTTATAAGACATGTTAGTTAAGTCCCCAAAGCAAGTCAATGAAGATTTTCCCACCCTAATCTTTAATGAGAATTGATTTCTATTCTACA-------------------ATAAACTA----AGCAGCTGAATGATGCGTATAAGCTGTTGGATATTTCAGAGCCTCAGTAGTTT---CTATAGAAAGCAACTAATCGTATTTGGTTTACAGTGTTTTAAATAGAAATCAGTAAGAATGCACGTGAAGAGATAAGTGAAAGTCTGGAAt-----ggtttttttttcaagaaatggaaattatTATTACTAGGaagatgagatttttaaaaat--agtctcaGTAACTGAAACCATCCTACTTTTCTATGTTACTA-TGACTTTAGCACTTGAAAATATGCTTCAACTTTTCAAGTAACTTGTAAATGAGGCTGCCCTGTTTATTTCCAATGCTTGGAAGTATTGGCACATTTTGG

a score=18946
s chr3           157688185 702 + 160039680 CTATCTCTCCCCCACTACAGC-------ATGACCAGCCGTGGGGAGAA--GCTGGCTTCATCTTTGAATTTAAATGTTATGATCTAGGTCCCAAAGTCTGAGGCCATAAAACAAGTCAACACAGGTAG--------------ACAAGAGATAT-TTCTTGGCCAGCCGCTGAAAAGGAGTGTCCTTCA-CCCAAGTCAGAA--------------------------GTCAGCATCCTTGCCCCTTACCCATGTTTCATTAACCTGTGTAATATGCC-ATCTGCTTCCTGGTAGAAAAAATTATACAAATTCCTTCCCTTCTTCTCTTTCTACTGGAGTTCTTGAAGACCAAATAAAGCCCTAGAAGTG------------GAAAGTATTATTTATTTCTTAGTT----ACCAGTAAGTTAGAGGGCAGCTGAGATAAGGATGTTTCCTTAGGACTTCTGAGAACTGGGAGGCGATTATCTCCTTACTCACTTTCCAGCTCACCCCTGGACTGTAAACA-----GAGAGACCCGGCTGAGAATGAGA---ATACCA---------------AGTGTGTCACGGGGTGTTTGATTAACCAGGGTGGCCA-CGACTAAGTTAATGATGTGGTCAATATTTCACAAGGTT-TCCAGCTATTACTCA-TTTAATTTTAATTACTTTATTTCCCTCCTCTCTCCACCTACACTTTTGATGTTTTCTATAAATTTGCCTAAATTATGCGGACAATTGCAAAATCCAGAATGAGGATTAAATGATATTTCTTCAGAAACCAGT
s HiC_scaffold_1 144907823 785 + 233722169 CCATCTCTCCTTCTCAGCTGCTTCTCAGACACCCAGCTCTGAACAGCATTGGTTTTTTCATCTTTGGGTCTGAATGTTTTAATGCAGATCTGCAaatcaaaagacataaaataagtcaGTATAGATGGCAGCATTTTGACTGGTGAGTGGTATATTTTTGActgataatttaagaatgattttCTACAGCCTGAGTTAAAATACTTGACTTGTTTAGTTCTTGGAACATTAGCATATTTGCTC-------AAGTTTTACTTACCCATTTAATTCTCTTATCTGCCCCACAAGTAAAGGTGTCTTGCAGAtacctcttctctttccctttctactGGAGATTTTAAAGACCAAAGAAAATATTGGCAATGAAACTGCAAGCTGaaagtattatttctttctccttctatAACCAGTAACTTAAAAACCAGCAGAGATAAGAGCTCTTCCTCTGGACTTCTGGGAATTGGCGGGGGATTATCTTTCCACTTGTTTCGCAGTTCACCACCCTTACATAAACACTGCTTGGAGACCTGATTTAGAGTGAAAGTCGTGCCATTTCCTACAGCGTGCTGGGTGTTACAAAGCATGTGATTAACCAGGGTGGCCAGAGACTAAGTTAATTATTTAGTCAATATTTTACTAGGTTCTTCAGTTATTacccattttaattttaattagttcGTTCTTATACTCT---CATGAACacatatgatgtttac-ataaaCGTACATGAATCATAAAATCAACTGCAAAAAACAGAATtgcaataaaattatattttatcagAAACCTGT

a score=13450
s chr3           157708496 2295 + 160039680 GCACTGACCCTGCTCTCTTTTG--------ATTTTCTCTTCTCAG-GGAATGAGATTTGGGATCACAGACCATGCAACATGTGTCAGTGCCCCTATTACCTGCCACTCAAACGCCCCTT-CCCAAGACTCATGCCACAAGCCAGTTCTAACTCTTTTAC-----------------AGCATTTCCTGCTGAGGACCAGGACTCTGT--GATCTCCTTTG---TGATCTAACATTGGCATAACCTTGCA-TCGTTCCTTCCTTGGGCTATGAGCAAGGTTGTAAG---AGTCCTTGCTATTTTTATGGCTTCTGTAGTTAGAGCTAAAGAATGCTATGCAAGCCTGCAAGTGCCCAAACAAGCAGGCTGTGCCAAGCACACGGTTCCA-CCCAAAAGGGCCACTGATCCAGTGACCATTCCCTCCTTGTGGGTAGTCACAGACCACTGTGGTATTTAAAATGTGGAGAGGCTTTGCATTCTTGTTTTCTCCTTAACATTCATTTTTGTCAGTTAACTAGAGTGTGAAAGAATAGTTATCAaaaacaaaacaaaacaaaacaaaacaaaacaGGAAAAGGCAAAGCGGTGGAGCATCAGGCCTGAGGTCACTGGGGAGCCTCTGATACTTCACTCTGACAGTGCCAGCCACAGCTGGCTGCAGGTCACCCACAGCTGACTATAGGTCTGCCACAGCTCTGTTTGTTCTATTGGTCTCTTGCATGTTAC--------------AAGAGCCATGGCAGACTACAGGTATATCATCTCTGATTATAGGGTGTATCTCACTATAGGTCTGTCTTTTATGGTTGATTGTAGGTCACACCTCACTGTGGCCTGTCACATCTCACCATAGGACTATCAGTTTTACCTGTAGGCTTTGGATGGCATTTTCTATTTATGGGTATG--TACGTGCTTAACTGGAGGAGAATTCAGGACATCCATTCCAAAATCAAGTGGAAACAGTAGAGAGCTTCTTTCATTTTTTCATTGACTAATCATCCTTTAAGGGCTGTTGT----GATGTGTGGCAGTCTCTGCCTGCTGGATGCTTATGGTCTAGAGGTAGACAAAGGACTGCTGGTTGCCATGGAGCAGGCTGCCCTTCTGACAG---AATTAGACACTATACTTAGAATTCAAAGAAGTGT--CTCAACACAGCTAGGT--GAGATCAACCAGGAAATCCAA-----------------CTAGAGGAGGAA--ACAGTGTGGATAGAAGCCACC--GTGGCCAGGCAGGTTTCAGAGATGATAGTGTGCAGATACGTGTAAGAAAGCACAAA----CTGGT------AATGCTTGTGGAATTAAAGGAAGCA-ATTGTATCCCTCTGGAGGGATGTTTAGCCATCAGGTATTTCTAGAGGAAAAGCCAAATTGAATCAAGAGCCAG--CATGAAGAGAGATTTTCCCGGTAAGACTGGAGAGTTTGGGCTTTGTCCTAAGAAAGGT--------------------------------------------------------------------------------------------------------------------------TGTTGCAATTGTT------------------------------------------TATT------------GTGCCATTTACCAAGTGACGTATGTACA-AGGAAACCTGG-TAGGGCAGTGCTCAAAGCCAAATAAGGCATGCACGCCTTTGTTAGCCTGAGTTTAAGATCA---GTTCGTGTATACCTCTCTTATCACCATCCCTTGTTTCTTGGACTTAGCTGCTTGATCTGTGGAATCATTTCGAATCTCAAACCTATCACTTACTGTATTACTGGCTTTCTTATCTGAAGAAACACACTTAGCCTCTACAA-TTGCTATTATTCTTACTGGCAAGATGAT-ATAAGAACATTCATCTGGTGCT-TTGTCACAGGCGATGCTGAAGAAAGAAA-ATGTAGCAGACAGATGCCCATCTGGGCCCTGAGGGAGTAGCCACTAGGACTGCGGATGCAGCTGCTTGCAGAATGTTCACA-CAGGAT-AAGGCCTGCA-TTCCTTTCCCTCTGCCCACCA-GTCAAATG-----AATGAGG----ATCAGCTCAAACTGACT------------ATACCCAAGCACCAC----------------AGAGCTTGGTTTTCCTCTGAGGTGAATAACCCATAATGTGCAATTTTTATCAAGAAAATCA---------------------------GAGAGGGAGGAAGGAACGTTCTGA-GATG------GACAGGAAGTCATCCATGATAACCAAGAAGGAACGTGAGT-CCCAAAAGAGAGCAAATCAATCAAGAAGAGGAGACTTTGCA-----GGTGTCCTTCAAAGAGGGTGAAGGAGCTGAGAGGTTGCTTTCTGAGTTCAACAATTCATTGTG--ACATCATATCAAAAACTGCTAACATGCTGTCACTCTAAGAAGAAAAGCATGGGA---TAGGAACCACAGGAGAAGAACCAACCA--CCAGCAGAGACTAG-AACTTCATCT-AGCATGATGCTTTTCTCGTTGGCCCTGTCCTCACGGTT----CTTTACTTATTTTATGATCATTAAATTCTCTTT
s HiC_scaffold_1 144935216 2371 + 233722169 GCGCTGGCCTGGCATCCTTTTGCACTGTGGACCTGCCCTTCTTAGCTGACTGCCATTTCATCGAAAAGATTGTGTTCC-TGTGACAGTTCCACTTCTAAATACCATCTTAATGTTTTTAACCCGAGACTCTTGGCCCAAGTCT-------CTCTTCTACGGTTTCCCAAGTCTGAAAGCATTTGCTAACTTTTGCTATGACCTCTTAAGATCTCCTTCGAGATGCTTGTATGTTGCCATAATTTTGTAAGTGCTCCTTCCTTGAGCTATGAGTAAGGTGGTGAGAAAAGTCCATGCTATTTTTATGA---CTGTTGTTAGTGAAAAAGAATGCTATGTATGTCTGTGAGCTCTAAAACAAGCAAACTGTATCAAGGACACAGTTCCAGACCTGGAGGGCAACT-----------------------------------------------TCTCTAAAATCACAAGAGGTTTT--ATTATGG----CACTTTAATGT--ATTAGCATTTGTTTAATAGA---------ACTTATTATCCATTCCCATGC-----------------------------CCTTGTGTTGGGGCA------------------GACATCCTTTACTATCCCCGTATTTAAGAGCAAGAGa--------------------------gac----------------ctttttcttttctattttgatcttgaaatttacttttatctattaagaagaagtagggatga-gACAGAGA---------TGAGCGCCAGGAGCGTGACACCTTGGAATTGTTCCGCAGTGCT--------------TCTCAGTGCTTTCT-TCGCATATAACTAGAAG-------------CCTGGAGG-------TGGCACTTGGAGTTTGTGAATGCGTTTACATG-------AAAAGAGAACTCAGGAAATGTATCTCCAAATCAAACAGAAAGAATTGTAGGatcccttcctttttctgttaAGCATCCATTCTCTGAGTGCCCATGCAACAGACACAGGACAGTCTCTCCCTGCTGG-------------------AGACGAAGCACGGCTGGGTACTGTGAAAAGGTGAATTTTATTGATAGTGAAATTTCAAATTGCATTTGAAATCCACAGGAATGTGGCTCAGGATAGCCAGGCAGGGAGTCACTCAGGCAAGCCCAGCTCAGCTCGGAGAAGGTTAAAGGTGGCACTGCAAGATGGGTAGAAGTCAGTGAGAGAAAAAGCAAGGTCCACAGAGGCTAGCGGACAAGTCGGTACGAGAGAACTAGAAGGGCTTGGTGTGTCGAAGGCCTAAGGAG-AAAACGAAGCAGACTATGCAGGTATAACTGGATGCCATGGCAACCGG-AAGTCTACAAGATGAGCTAGA---AAACCAGAGCCCGATCCTGGAGTG---TTTCCTTTGCAAGACTAAGGCATTTGGGCTTTGTTCTAAGAAGAGTGATGGAAGATTTTTGGTAGGAGCATGATTCAAACCAACTCTCAGAGAAAGATGGGTCAGCAAGGCTGTGTGAGGGGGAAAATAAGGCAGAGCAAGAGGAGGTATTGTCTGTGGAGATTTAAGTGTTACAACTGGTAAGACtgcagaaggaggaaggagagggttGGATGGGTCTCACCATTGGGCGGATGACAGTGCTGTCTACCAAG-AAAGTGTGCAAAGAGGAGATCTGGAAAGGGCAGGACTCAAGGCGAAGGGTGGCATCCAAGA----ATGGACCAATATTTTGTGTCACAGTTTTGAGGCTACTTCTCTGATCATCCTCACTAGTTTGCTGAGTGCAGCAGATTGATTTAGGGAGTTATCTC-CATCTCAAACCTACC--------TCTTACTGGCTTTCTTATCTTAAGAAGCTCACTTGACCTCTACAAGCCTCCTGTGTTCTCACTGGCTGCATAATGATAAGGACATTCCCCTCATGGTATTGTCACAAGCAAGGCAGACGCGAGAAACATGTGTCGAGGAG--------TTTGACCCACAGTGAAGGGCGAAGAGG--------TGCAGTTATTTG-----TGTTGCCGTCAGAATGGAGGCCCCTACTTTCTTCAGCTTGGCACCCCACATCAGAAGCTGTCGAGAAGGCATTGTCAGATCGAGCTGAATTGAAGCAGTAGGACACAGAAACACCACCTGCAGTTttggaaagagaggaagagttTC--------TGTGTGAC---TAATGTACAG-CCTGATTACAGAGGTCACCTGAAAAGAGACAAGGGCAGGACCTggagatgaagaaaagaaaggagtgaCGATGCAGAGTAAAAGGAGGTGACTCCTGACAgctaagaaattattaaaataacccAGGGGGAGGAACTCA------AGAAGGGATCCTTGCACAAATGGAGCTTTTAGGAGAAAGTGAGTATTCTGACCACTTTCCTTCTTATCTCAAGATTTTTTAACAGTATGTCACATCAGAAGCTCCCAACACATCATCACTAGCAAAAGGAAACTACAGGACTGtagaaa----aagaatagaatcaaATAGGCTAACATAGACTAGAAACCTAATCCAAGCACTGATCATGTACCATT-CCACTGGCTTCATGGTTtgtatttcattcttctttgggGCATGTAATTTTCTCT

a score=15028
s chr3           157710836 563 + 160039680 CCCTCTTGACTGAGAGGAGCCTCCTGTACCATATCTAGGTCCCTTGTGATTTCCGGAGACCTATGGGGCATTCTTGGCCTCCCAGAAGT--ACAGAGAAGGGTGC-ATGGTTCTGGTCACTGCACTTTCTGACTCTTCTGACTTTCAAACTGTCAACACCCACAGCACTACAA-CTTTAATTGATGTCAAGATAGAATAGAGAGGCTG---GACCATTTCACTGTTTCCCAGTTGAGCTAAAAACCCTTGGAACCTGCCTTTCCCCATACTCATTTTCAGTTCCTCAGAC--TTCTGAATGGAATCTTATGTCCAAACACAATAAAAGAAAGAAAATATTTCTCTGATCTCTGCTCTTGTTTACATACC-------------------AGTCTAA----------ATTATGAAATAGCATAGCCACCCAGATAGAACATGATAGATTATATAAAACAGCCAACTCACATGTAAAACAGATCTTTTCAAATTCTG---------CTTT------------ATAAGATCTCAAGAATTTGGAAATTTAAATATACAGAGACATTATTTAGACACTTCATTAGA----AAGCATGGACAAAAATAATAAACCA--TCTATCATATTAGAAC
s HiC_scaffold_1 144938901 603 + 233722169 CCTTCTGGACCTTAAGTGGCCTCCTGTGACACAGCCATGCCAGTTCCGTCTGCT-----CCTTGGGGCTGTTAGTTGCCTCCCAGAAATCAGCTTGGAAGAGTTCCAGGGTGCTGCCAGCC----------ACCCTGCTGATTTGCAAACGGTCAACACCCGCAGCGCTGCAGGCTCTGATGaacactaaaacaaaaaatagcaacaGCGCGGCCGCGTCATGGCTTTGCAGTCAGGATTAAA---TTAAGAGGCTGCCTTTCCTCGCCCTTGTTTTGAGGTACTCAGACAGTTCTAAATAGAGTCTCATACCCAAGCaccatggaagaaagaaaatatttctctgttttctgttcttgtttaTACGCTGCTCTATAGTTTGTGTTTTAGTCTGAGTTTTGGGACATTATGAAATAGGGTAACCACCCAGCTGGAAAATGACAGCTCGAATAAATCAGCCAGCCCTTACGTGAGACAGA--GTTTTAAACTCTGGGTGATATCCTTTCCTGAGCCACAGAAAAGACACCAAGCGTTTAGATATTTAAAT----AGAGAGGTTGCTTGGGGACTTCCCTAGGAAATAAGCACAGGTAAGAGCAATAAACAAAGTCT-TCATCTTAGAAC

a score=17694
s chr3           157714855 2949 + 160039680 GAAACAAGGAGGGAAAGATAACTG--GGCAGTA-TCCAATTTAATCAGTATTTATTGAGGACCTGCAGGGAGCATGGCAACCTATTGGGACCTAAGTGGAAGTAAATTCAATTCTCTCTAGCTCTGAAGAGCTGGGAAACACAGCT-------AGGGAGCTACCTAGGAGAAAACTGGTGTGAG-------GACCCACAGGGCT-----------------------CTGAGCAGCA--------CCCACAGGGCTCTG--------------------AGCAGCACCCACAGGGCTCTGAGCAACACTTGGCCTTATCCTGGCTTCCTGGACTAACTATTGGCCCTATAAGAGTAGCAGTGTATCTTTTTATGA--GAACAATCTGTAATCTCAAAATAAAAGTTAGAAATATTAAAATTTAAGGGG--------GTTAGACAGCAATGTAGTACATTTCTCCTATCTCTGGCATGTACTGTGCAGaatttta-------------------atttta-aaaattaaaat-tGTCTGGTTCATAAAATCCATTCTAGGAACTTATTCTCAAGAATATCAGCGTAT---GATACATACCGGAATGAAATGTCTTTAGATGGCCTGTGAGGAGAGAAGTGCAGACCCTCG-------------GCACTCATAGCACAAAAATAAACCAGGCGGTTAGAAGAAATACAGCT-TTCTTGGCAATA-GTTTTATAAACTATATTTGCAGGGAAAGACCAAAATCATCAGTGTTCTTACTCTTTATTT-GTGAGTATACACTCTTACACATCAGCT---------GCCCTGTGAAACACAGAAAGGCCTGTGG--------------------------------------------------------------------------------GGGATTTGTTCATTTTTGCAGAGCACAAAAGTAAGAGAGAGTT--------GAGGCTCGTGCATGGATCAG-ATAGAAATAAGAAT--GCAAAACGCTGCTGTGATTGTCCAGACCGTGGGG----------TAAAGAGAGTCACTTGGGGAAACGGAGGATGATGGGATTGCAGCTGTGGCTCCCAGGACAGAAAG--------GGAATCGAATCCAC------GCAGCAAAAGGAGCACT-TCATGTTGGCATGTTGTAGG---CCTGTGGTGTGCCAGGAGA-CAGCACGGTACTGT-------GGGTCCCAGAGAGCCCTGCCATGCCTG-----CGTGAGGAAGAGT------GCAGGTTGGAAGGA--------TCATACCATGGGCAACATTCAGGCCCACAGTGGCACCTTGTGGGTCAGC-ACCAATCACTGCATCTCAGGCAGT--------------GAGCAGTTCTGGAAACTCAGCACTGCAACACGTTG-------TCCCCAGAGCAGCCAGTTAAAT--------------CCGTGCGAAGGGAATCAGAGAGCCATTTCT-------------------GACTTATAAACAGAAGCTCAGCTCGTTTTGTGTTTGCTTCCTCGTTGATGTGATTCATCAGCACAGAGTACCACACTGTCTGGGGTGTGGCTCCAGTC--------AAAAACACCAAGTCACCTCGG--------TAGCTTCTCCAAAATACATGTAACGTAGATAGACATGTGATTTAGCCCACCAG-AATTATTAGGAGCAAAGATCACATGGATAC-----GCT---TTAGTCCCCAGAACACAGTAAGCAGTCAGTAATGA-TCATAAATTTTACTCAGTTTG-AGAGTGAGTTTACTAGAAGTGTGACAAAATTCTGACACAAAATATTTGGGTAACAGTTGCAGAAATGGAAA------------TGTGTACTATCTGAAAAATAATAAGGAATTAATAATTCTCCAATAAAACAGCACCAGCCTTTGCAGAAAGAACTCCATGAGAACAA----------ACACTAACTGTATCCT------------ACCAGGGCACTTCAGGT--------TAGGATGCTTCAGGATCATGGGAAAGAGCAACGGAGAAAC---------------CATCCAGGTCCCTAATAGGTCAATAGTATCGTAATGCCACCTGTCTCCCCCTCCTTCTCCTCCTTTCTTTCAACATAACCACACTGGAGGCTAAAGAGAACTTCCAATTCCCC-AGTGATTG----------AAAGTGTTGACAAGCAGGCTGGTGACCTGGATGG----ATATTCACAGGACACAGACACCTCCCTAAGAGAATGTGGGAGGGAGAAGAACACACCGTGATATTTGATAAGCT-GAAATAGCACATCAGAAATCAATGACATGACCTGGTGACATAACAGAGAAGCT-GTTTCTAGTCATGTGTTTCTA-----------GGTGCAGAGCCAGGCCAAGACATTGGTAATCTGACCTTTCACCTACCTATCTCTCTCCAATCTCTCCCAGGTTCAG--GTTGACATTTGCACTTCAACTCTTATTGTGGCCACCAGAGCCGCTCAATCTGACCTAGACGGCATCTCTCA-----------GATAACCACTAGGATTTCTACCTTCCTGCATTACTAAAGAACAGCTATGGCACAAACTTTCTGAATCTCTGTGGTCCATCCTATTTTCTATCGGTGGGAGTTCCTGCATCAATCTTTACGATTAACTCAA-TCTATTGGATGGAACC-CCAATGTTGCATCCTGTTTGAAATAAGGTTTTAGAAATAATCAGAATTCTCTGTATCTTTCCTAGGTGGATTGACAGCATGGGCTCA--------------GAAACA---------TCCA--------------GTCAGTTA-----TTTACTAAGAATG--------------------------------TATATGTATCTCACATTTTGTC------------AGTCTTGAACCACGGACTTAAAAAGACACAGACTCTGAAAAC-------GGTGGACAGAAGTACTCAAAACCACAAT--------AAGCACTCAGCCACAGGGCTGATGCAAAGGA---AGGTTTCTCTTGTAGAGAGAGAGAAAAAAAAAAAACGAATGCATAACACCAAGTGGT-------CAACAAGCCTTGACAAAGGTGCATGG----GGTGACTGCAGAGGGCCT--------TGCTAAACAGCCTTAG---------------------------------ACAAGGCTGCTTGTGGACACACCCTGATGAGGTGAGCATATACTACAAGTTAGAGA----TGGGGCAGATGGTCATTTGGAATCCAGTAATACATTCACAGCCGAGAAGTTAAACCAGAAATAAGGGCACCCACCTTGT---CTACTGTCTGAAGGAAATATGGAGATTCAGGGTCAAGTTCGGCTTTCATCTCAAA-CATCTTTAACCTTGTGTTCCTGTGATAA-----CAGCTTCCAGACTGAATGGGCTCCCAGCGCCCTCTAGTGGCC-----TATGTGTT---AACACATGCCAGCCAATCCCTCAGCCCTTTTCCTAAACTCC
s HiC_scaffold_1 144944521 3467 + 233722169 GGGACAGAGAGG---AGATAACTGCAGACAGTGGTTTGGTGGAGCCGATATTGATCCAGTGCCTACAGGCAGCCTGGCAACCTCCTAGATCCTAAGTGAAAACAAATTCAATTCTCTCT------------CTGGCTGGAACAGCTGCCCGGGGCGGGGCTGCTCAAGA-------GGTGTGAGCTCAGCAGACCCTCCGTGCTGGGCCCTTCCCTGCCTTCCGCAGCCAAGCTGCAACTTTCTTCTCCCCTGGTTCCGTGGAAGGGACCTGAAGATGAAGAAGAATGCGCTGTGCT-TGTTCTGTGCTTGTTCGTATTTATgacagcaggtctaaagaagtgCTCT-TACCAAAAATAGTCTCTCTGACAAAAACCTAACAAAGTGTGATctcaaaatgaaag--ggaaatgttaACACTGAAAAGATAATATCCATCAGAAGCTGTTTTCATAAAGTAACTCTCCTTCTAGATCCCAATGTCTAGGTCtccacagatatatatatatatatcttttataacATGGATATATATCCATGTTATAAAATTTAGGTTAGAAAAGATGCCTTAGGAACATCAGAATGCACAGACTCATATCTGATCCAGATCATTCCAAATGACCAGCAGAAAAGGAAATGCAGTCTGTTAAATGACTCACAGTGCAtccataagataaaaataaaac---tggttAGGAGAAATACAACTGTTCCCAGGAGTAGGTTCTATAAAATAGACTCATAAAGGAAAGACACAATCAGCAAAACTCATCATACTCACTCAGCAAACCTGTACCCATTCAGACCAATCCATCCGGGAACCCTGCAAGA---AAGAAGGCCAGTGGCATTTTGATTTATAGACTATTAGCTTACCTttagtttttctatattttctcatcTCACAGCTCAACTTTTACAATTTTCTGGTCTTTGGT-ATTTCTGCAGAGTGAAAACTCAGAAGTCTTTTTTAAGTAATAGGTATGTATATGTGTGAGTATAAAAGCAAGAACTGGAAGAACTCTGCTGCTATTGTCCTGCTGATGGTGCAGACAGTAATAAAGAAACTCA-------GAAAGAAGGGCTATGTGTTCCAGACCTCAACTCCCAGAAAAAGAGGTCAAAGTTGGACTCTTATGCATcatggaggagcaaagatggtgctCTGGGGATGGGGTGTAGAAAGATCTCTTTGGTGTTTCGGGAGAGCAGAATGATACCACCCACACGGAGTCC---ACAGCTCCTCTTTCCCCACCTCCCATGAGACTCAGCACTGTGGCAGCTCAGCAGGAAGCATCTGTCACACAGCGTGGACCAGTGAGACCCTCACCAGTACCCAG-GGATCAGTGACCAGTGACTGCATCTTCAATGATCTGGAGCTACCTACAACCAGCTCTTGGATGTCA-CACGACTTCATGGGGAAGGAATTCCTCA---CGGTCACTGCAATTAATGTCTCTACCACTGTGGCAAGACAGGCTAAGAGAGAATTTTTGTTGGCAGAgtattataaaacatataaatgaaa--tcatctC-CTTTCTTTATGCTTTATCACATGCCTGGGTTTGTGGTGTGGA----TGTCCTGCCTGCTGTGAAGCTCTGGCATTAGATGGAACCATACCTAATTTCTTCAGCTCTCGGTTCTCTtctttataa-------aatggagataagagTTGAATTTAACTCATTAATTATTGTAAGGAGTGAGGACTCGATGGATGCTAAGTACTCAGCCAGTCCCCACACTTTAGTAAGAGCTCAATAATAACTCATTATTGGTACCCAGTTTGAAAAATGACTCTGGTTGAAGCGAGATAAAATTTTGACATAAAGCTTTTAGGCAACCTTTGCAAAGGCAGAAATTCTATTAGATGTGCACACTGTTTGCATGATAA-----ACTGAAAAGCTCTGCAAGACTTCAGAGTCATCC-TCACAGGAAGAACAATGTGCAAACAGGGCCGGAAGCACACCAGCCGTCTCCTGCAACATGGGAAACCAGGGCCGCTCAGATCCACCATCTAACTTGCCCCGAGCTCACGAGGGAGAAGGATAGGGAGGCGCGGCAGCACCCCTgcagccaaccctgcaaagagtcAGC----------TGCTGcgtttctcctcttctcttccctcccttcccccaaCTCAACCACATTTGAGGTTAAAGAT-ACTTGTAACTCCCTGAATGACTAACTCAAAAACAAACTTTCAACAGGCAGGCTGCTGGCCCCgataaaaatatcttaatatgACGGATATACATATCATCAGGACTGTGGGAGG--GGAGAATATACT------TTTGATAAGCTAAAAAAAGCATTCTATAAATGAGTGACCCCACACAGAAATCAAACAGTGAAGTTCATTTCAGGTCATGCATCCTCAAAGATAAACATGACGTAGGGTCATG-GAAGGTAGAAGCAGGCGGTTATTCCTGCATTTAATAAGGCTTCCAGCT-TACCATGTACAGCAGTCTGcattcatattaaaaattttagtacAGC--CTAAGGGTGTCCACTTTAGCCTTCTTTACCTCACCCAAATTATTTGGGGATTATTATTGGTATTGTTGCCTTCCTGTATGGTTACAAAGCAACCATGGCTCAAAACATCTTCATCTTTGAAGTTCAGCTTCTCTTCTCATTATGAAAATTCATACACGAGATTCTACTAATGATTCCATTTTGCAGGACAAGTCCTCCCATCTTGGCTACTATTTgaatt----ctttctctttgct---ggttctctAGTTCTTTGTTAGGTGAAC--ACTGCATTGAGTCATGCTTATTCTTTAGGAACCAGAGCTGCTGTCCAGGATAAATTTTGGTGGCTGTTACAACGTTCCCTGAGATGGGCTTCCCAGAGGACACTCTTGGAATTCTAAATTCCATGTATCCATCACTTTGCACCCAACTCCAGGAGATACAGACCACCGAATtctatgaataaatattttggtgACCCATACATGTTGACCGAAGGAAT-AAAACCGTGATTTCGTGTCAATGTCACAACTATAGAG-------AGAGGACACAGGCTCAGAGGGAAAACAGAGGACACAAACAATCACAAGTGATGGGCGCAGAGGGGTTCAGTAACAGTGGGAACTGGAGGAGGTTCAGAACGCTGGAGAATGT-GAGGGTCTCACAGTGGTGAAGAACAGAGTTGGGATCATTGCAAGAGCTGGCCCGGTGTGCTTCCCACAGAGCTATTCTGAGAGGCATCTTCA--AGGAGAAGATAGGTTCTAAGTCAGAGAACACTGCGGCACACAGTGGTTCGGTATCCAACGG-ACACCCAGCGCGGAGCAGTTGAATCCAAAATAAGCGCATTCGCTGTGTGGCTTACTGTATTAGGAGAACGTAGAACTGCAGATTGCAGCTCTGGTTCCAGCTCAAGCCACTCTCAACCCTATGCTGCCTTGGGAGAGACCCAAGCCCAAGCCTGATTGGGCCGCCAGCGCCCTCTGGCGGTCGCTCGCGCGTGCCGGAAGCACA-GCCATCTAGTTCC-CACCCCATCTTCCAGACCCC

a score=15345
s chr3           157726737  847 + 160039680 CCTAGAATCTTTGTGTGGGTTTTTATTCAAATCTAGCACTAATTTGTTTTGCTTAGGATGGGTCCTAATGTTCATTTTGCTTCACTTAGAAGATTATGGATCCTGGTTAAATTTTTctgtgttaa--------------------tagattataaatgagctcctggag-tctgaccctgttcaat-attctgctttctccctct---------------------------------------gtggtctgtcaccaggtgacttcagaaactgaacacaggcacag---ttaaaa-----------------------------------cagggtactagccaggt-------aTGATTG-----TATTTTAGATGCAGGCTCTGGCTGTA--------------------CAGTGG--GTTGCTATCTGCTCTACTCCAGTCTAATGAACACACCACAGCTCTTCAGAACTAATGCTCTAATCCAAAATTCCTGCCTAAGTTTAGGAAGGAACTGAGGGCTAGGTCAAGACAAGAA-GGAAGAAGTACTCTCAGGAGCGCAGGACT--CTCTTGGCAAACTCCAGCCTGGAGGAAAATGTAGTTCTCAAGCAAATTTATACATATCTTCCTGAGTTCTGTATAATATTCAAATGTTCTCGCATAATTTCAAGCAAATCCTCGTTGAAGTTTCATGGA--TTAG----------------------------GGTTTATTTTGAAACTGTGAGTTATCTGTGGATTTTAAAATTACTGAGTTGGGCTAACTTTTGTTTGTTTAAGAAAGGGGAGAAAGAAATAGCCTAAACTC-CAAGTTGTTGGTGTTGA--AATTCTGAACAGTATAAATC-AACACAAG------GGGATATCCCACAGGCTCTGCCAGAGTAACAGTAAATGTGTGG----GGATGAAGGATTCAAAGGTCACC------------------------ACAAGGCAGAGCGATGAGA---TGCAGTTTTCTTATGAAACTCAAATTACTCCTTTTTATGGTAGCTCT
s HiC_scaffold_1 144973394 1029 + 233722169 CTCAGAACTTACGGGTGGGTTTTAATT--------GTCTTCGCTTGTTCTCCT----GTTGTTTATAATGCCCTTTTTGCTTCAATTCAA---TTATTGTTCCTAGCCAGCTTTTCTTGTGCCAAGACACAGCTTTTTCTACACACAGGTGATAAATGGAGTCCCCCAGCTCTGCCCCTGTTCAATCATGCTGCTTTCTCCTTTGCAGTTAACCATGAAGGGGTGAATAGACAGCACTGAGAAAGAGGGCTGGTGTCAGGGGATTTTAGATATTGAACACTGGCCCAGCAATTAAACTCAGCCAACCAGAGAAGCAATAAACATTATGGATCCAGGTCACTGGCTATTTCAGACACATGATCAGTGGCTATTTCAGATGCAAGGACTCAGTGCAAACCAAGAGTCATAGGACCACAGCAGAGGCTGTGACCTATGTTATGTCTAGCTAGCCAACAAAGCACAGCCCCATGGAGCTAAAA----GGACTGAGAGTGTTG--TAGGTTAGAGAGGTAACTGATGGCT-GACCAGACTGAGAACAAAAAAATTTCACATATGAGTCCAAGCTTGTCTCTAGTCAGCCTCTAACATGGAGAACAATGTGGCTCTGGACGAAATTTGAATGTATTTCCCTGCATTCTGTGGAAGAATTAAATGTCCTCACACAATTTCAGGCCAGTCTTGGTCGAAGTTTTATAggtcttggtttatttttttttaaatgttttggtcttggtttattttgaaacttcaaattatttataaatttttaactgACTAAGTTAGGCTAGCTTTTGCTTGTTTAAGAAAACGGAGAAC-AAACAGCCTTAACTCACAAGCTGCTGAAGTAGAGGAATTGTGA--TGTGTAAATCTAGGACAGGACGTGAGAAACGTCCAACGCCTTCAGCTACAGTAGCAGCAGATTCGCTGGCCTGGCTGAAAGGTTCAAAAGTAAGTTAAGGCAAGAGAGCCTGGtggtaagaaagaaagagagctgagAAGGTAAGTTTTTCTTAGGACGCTCCCCTGAGTTGTTTTTATGACACCTCT

a score=4899
s chr3           157731698 116 + 160039680 CAACTTCTTCAGAGTCAACAGCAACAGGGAAATATGGTTCTTAGCTTTCAAATCAGGAAGAGCTAGACTTAAATACCAGACATGTCCTTTTCTAGACAGCTTCCCCAAAACAAAGT
s HiC_scaffold_1 144977268 115 + 233722169 CAATCTCTTGAGActcaa-aacagaagggaaaaatagTAAACAGCCTTGGAGCCAGAAGGAACTGGATTTAAATTACAGACATGTCACTTTCTAGCCAACTTCTCTTAAGAAAAGT

a score=17692
s chr3           157732420 556 + 160039680 CCAGAAGAATCAGTATTCAATACAAAACAC---CCTGGGATACTTACGAATATCAACTGCCTTTTATGTTAATCACACA----CAGACATATCAGTGGGAATGAACTGAGCAGGCCTGCCCTCAA-TTGTTAAGATCCGCATTGAGACAGAACAA------------------TTAAACAAGACTAA--------------------TGAATATGGCATCAAGGAGTAGT----ACAAGCTGTATCA----CCTACAGCTCGAATGCAAAGCAATCTGCCACCATCTACCTAACAACCGGGTGGCT--GAAGAAAACCTAGGAAAATTGTTCACAGTGGTGAGAGCTTGTATTAAATGCAAGAGCTCTGAGCAGAAAAGCTCCAAAGCCTCATTAAAACCAATTAATGATGTAATGATGTTTGGCTCTGTT-AATTACCATCATAATGTAATGTAATTAAACCCAGTGGCAGGAGAACAACACTACCAAGATATGGACAATTAAGTTATCCACAACATATGTAAGCTATATTTGTGTACCACATAAA---TCTAAGAGGAAGGGTCTATGGCCACCTTAATTAAATCAAGCCTTTTTTTTGTACTTGTACATAATA
s HiC_scaffold_1 144979669 606 + 233722169 CTGGTAGAATCAAGGTTCATGGTGAGACACAACTCTG-----CTTAGAAACAGTAACC-TCTTCTGTGTCAATTGTGCAATTCCAGACATCTCAGTCAAAATGAATTTTCTAGGGCTGCTCTAGAGCTGTAAGAACCCACAATCAGA-AGAGCAAAAAAGTTAACaagatggattaaaaaaaaaaaaacagtgaacatCTGTCCAGTTGAAGATAGCAACTTGGTCCACTCAACACAAAGCACATCAGTGGCTTTGAGCTCAGATTCCGAATAATGAGCCATCATGTACCTGGCAACTCAGTGAGCAGGAAAGAATTCTAGCAACAGTGATCATAGTGGTGATAGCTTGTATTACATAAAAGAGCTCTTAGCC--AAGGTTTCAAGGCCTTAT-AAAACCAATTAATGGGGTAATGatgttttgctctgtttaattACCATCATCCTGCAGTGTAATTAAGGCCCTGGGGAGGAAGATAACAGCACCAAGACGTGGACAATTAAGTTAACCACAACATATGTAAGAGACGTTTATGTGCTGCATAAATCTTCTGATGGGATGGATTTGGAGCTTCCTTAATTAAATtaagtatttttcttgtttttgtccatacta

a score=9308
s chr3           157735905 586 + 160039680 aAATACAGGCA-TGTCATCATCAATCTAAGaaatattacaaatt---ttaaataaaaaataattattaaataCAATT---GTCAACATGCAGTTCAATAGTGTCTGGATAATTTGGTTTCTTTTTTCTATTCAGCTCTAATAAAAAGTCTTACAACCATCATTTGATATTCTGAATCATTAGTTTGTTTATAGCACTCGGCCCCTAATGATTAAAATATCCC-TATAACATTCTTCTATTGCTAGCTCTATTTGCC----------AGTCACTCTGCA--------GACC-----------------CCACAGGAGGGCCTGGAGGTCTCCACA----------GGGCC--AAGAAATGAGTCCCTACTGCACACAG-CAGCCTTATTGGGTAGAGAGAAAGAGAGAGAGACAGGTTTAATCTTTAGATATCCCTTTATGTCCCCACTGACCGTCTATTA-TTTTCAATTACTGCTTTCCTAGGAAGCTGGTTTTACTGAAATAACAAAATAGAGATCACAC---TGACTTCCCTGGAAACAGATCCAGATTTCTGTACAT--GTTCCTATCTGGATTTCGGTGTCAGGTGTAA-------------CCAAATCTTTCATAGGAACTA-ATGTTTGAACCTGAGGGGGAGATGTACATGTAT
s HiC_scaffold_1 144983165 636 + 233722169 AAATTCAGGCACTGTCATTATTTGCCTGGGACTTACTACAAATTGATTTATGCActataataatattaaatatcacCTGAGGTGGGATTCAGTCATATAATG-------GATTTGGGTT----TTCCTATTGTGCTTTAATAAAAAGATGGAATACCATCAGTTGACATTCAAAAGCTGAGCTTTGTATGCAGTTTTAAGCTCCTAGCAATCAAAATGTCCCTTGCAGTTTTTCCGTATTGCCTGTTCTCCTTGCTTTTCAGATTGAACCAATTTGCATCAACCAGGACCTACTTAGTATGTGTTAGTCCCAGGAGGGCCTGAAAGTCTCAACATCTGTTATTTGCactgaaataaatgaatttctgTTGCATTCAACCATCCCTGGGGGCTACAG-------------GAGAAGTTTAATCACTGGATATATATTCACATCCCAGCTAG--GACTATGAGTTTCCAATTAGAAATTTCTCAAGAAACTACTTGTACCCCAACTGCTGGTTGAAAAAGACACAGTTTGTTTCCTTGGTAATAGTTACAGAATTCTGTATTTTGAATCACACTTGAATCTGAGCATAAAATACGATTTGCCTATTAGGCCATATCTTttacaaaaactatttttttaaatctgaagagaatatatatatatat

a score=30685
s chr3           157753806 1791 + 160039680 TGATGTCCACATGCCTAAACTCTT-----CTACCAGGCT---GTCTCTCTATTCCTTCCTTTTCCTCCTTCTC-CGGGACCCCTCCCCATCTCTTCTCCCT-----CCAATGCTCAAA----GCTGTGA-CAgcagagtggtagaacaaaggcac-----------aacttcagactcatacagacctgtcttcaagttctgactcagataagtaatgc-tgtgtgaactagggtaaattccctaagcccacatagcctgtgttcacatgcattatatgggTTTATGGTGAATGGGAACATTAACTTTCAAAGTTCATGTA--AAACAAGTATCCCGTATCATACCTTAAGTACTTGAAATCTGAAGAAGCCTGTTACTGTCTTCTGTGCTACATGTGAGC--ATACTCCTTCCCAGACAATCTGTTTGCACTATATGGAGACACCCACCAAGGAAGGCCTGTGTCAGAGCCCACTATAATTAAGAATGTTCTAAGCTTGTCTTTCATTTTCAGATACAATAAAACCAAAGAAGACTTCAAGGAGAACTTGCTACAAGTATCCGGTGTCTTCAGGAGTTACAATAAAGACAAGAATATCAATCTTGAACACCATCTTCTAATTTCTTTTTTCATGGTTGCTGTTCTTGGGTAGAGAATGCAATTAAAATTAACTCTGGATTCGTTCAC-TTTCTTCAAAATGAACATTGGTCAGATTGTATCTGAGGGATCTGTAACATCTCTTCTGtaattatttttaaatatattaGCTGGGATCTGggtattgtagagcaaggggag-tgtttgtaggagacaggagttctgggttctggctctggttttg---tgatttaccatgtgaaccatggaaagtcatgccttatggttgaacaccatcttcactgtaaaatcgat---ttgttgtgatcctgacaggattgtctaggactcacataatcatgcatgttaaaagcAAAA-----------CTTAAAATCAACCTTGTGATTACTACCCGTACTCCTGGAAAATATGATCTGATACAAATCAGATCTCACTGGGATCTAACACAAATGCTGTATTGGGCTTATTGCTGT------------TAGGATATAGAGTAATAC---------CTGGCTTATATTGTAAAAGAAAGGATTTTTTTCCTTTTCCTTTTAAATGACA-----------AAGTATGAAAAGAGCTGAGCTCCACTGTTGAA-----AATAAACACACTAGACAATCACAGCTCAATGGCCCACGTGATTGAAAACTGGGTCACAGGCCATGTACTTCCCACTCCTCCAATGCATGACAATCCAGCTTGCTGATTGTCCTAAGTACTCTTGAGGGTTTCTCTAGTTCTCAGCACCTTTACTGGTATCTTGGGACATTAC-CAACTTACAAAACGCTTCAGTGATGCGAACATTCACTCAGCCCTTGTCAACAGTCGTTGGCTGTGAGCTCTGACACTTTCATGGGACATCTGATTTTTAGTT--GGTGGCATAAAAA-GTTCAGTGGCTATAGTCTAAATCTACCCATAACTGCTTAAGTTT---------------------------------------------------------TAGAATGATTGTAACTGTTCAGAAAGAGTACATGGT--GTTCAAGGAAAGCTAACACTGTCAAAGCTATCACATGACTGCATCAGGCAACATCTTTAACAGCTGCTATGGTGCAGTGGATTCC-CAACTCCATTAAACTCAGTCCTTCTACCACTTCTGCTTAGAACAAACCAAATTCTCCTCTTTGTCTCCGGTCATGAAACTGACAACATTTATATCCAGATTAATGCTAGAGAGTGTAAAATACTCCTGAAGGGAGACAAAAATATTT-CTGTTACACTGGTTATAAGCTGCTTTGGTCAGCTGTGTGTTCCTAAT
s HiC_scaffold_1 145009634 1820 + 233722169 TGGTTTCCACATGCCGAAACTTTCTTGTCCTACCACGCTCTGTTCTCTCCactctttcttctttgctttcatCACAAGACCCT----CATCACTCCCTCCTGAATTCTGAGGCGCCAAAAATGCTTTGAGAAGCCAAAGGACAGACCAAAAAGACGGACCAAAAGGAATTTTGAACTCAGACAGATCTGAATTCAAATTCTGTCTGGAACGCATAACACCTGTATGAATTTAGACAAGTTCCATAGCTCAACTGTGGCTGCTTACATGCTCATAAGAACGAACCACAAGTGACGCAAATATGAATGT--AAACTTTATGTATAAGATGAATGTCTAGGCTGCTACCTGGCATGCG-----------------------------CTGTGTCACACATAAGTTTATGTATTTTCTCTGATGCTCTTTTTGCCAAGTGCAGAAAGATCCACAGAGAAGGATCTGGGTTCAAATGCAGTATAGCTCAGAACACACTGAGATTGTCTTTAACACTCTATCGTGAGAAAGTTAAAAGAGACTGGAAAAAGTATTTTC-ATGAGCTTTTGGAGGCTTCCATGGTTGCAGTAAAGGAAGGAAAATCAGCCTGGGACTCAGTCATTTAATTTCTCTT--CATGATTACTGTTCTCAAACAGAGAATGCAATTAAAATTAATGCTATTTCAGTTCACCTTTTTTCAAAATGAGCATTGATCAAATTCTGTCTGAAGAGCCTGTAGTATctcttctgtaattatttttaaatgtattaacgGGGATCTGTGTCTTGTAGAGCAAAGGGGGCTGTTTCCGGGCGACAG---TGCTGCGTTCTGACTCTAGGGCTGCACTCACCGACTACGTGACCTAGTGGCAGTCA---CTTCTGGTGAGTCTGCATCTCCCCTGTACAATGGGTCCATTACTGCCACCC----AGGATTGTCCAAGGATCATAAGATCCAGGGTGATAAA-GCAAAAATTGCTCCATACTTACAATAAAC--TATTATCACTACCCATCTTCCTGAAAAATATGATT-----CACAGAAGAAC-CATTGGGA-ATGACACAAACATT----------TATCGTTGCGATATAAACAAATGTGACACAGAGTACCCCAAAGTCTTGCTGACTTCTA------AATAATGAAGgctatttcttccatttttagatGACAGCTAGAGAGAAAGGTCTGAAGGCAGCTGAGACACATTGAtgaatatttaacatatttatcaaataaatataCTTC-------CGAATGACTTGGAACTGAG--ACGATCCCTGTTCTTT----------------------GTCAGTGTG----TTGTCATAACTGCTCTCCAGC-TTTGACTTTTTCTCAGTGTCTTCTCTGATATCC---AACATGCTGTGGTCTAGGAAATGCGTCATGGCCTCAAACACCCACTTGGCATTCACCGACTATTGTTAATCATGAGTCCTGACAGTTTTATGGAACTTGTAGATTGGGGTTTAGATGGAATAAGAATATTCTATTGCTATAGCTTCAATATGCCtttaataacatatatatatatatatatatatatatatatacatatatatacacatatatatgtatatatatatatacatatatagtggCTATTT-GAAAAAGAACATGCTAAGCACAGGGGTAAGTAATTCT--CAAA--TATAA-ACAACTATGTCAGGTGTCATTTTTATTGATCATCACAGTGTCAAGAATTTCACAACACTATGAGACTGGGTTCT-CTCCCGGGCCTGATTGGACTCAACCAAATGTATGGCTTTATTTTGGATCTTGACACTGATAGCATTTTTATCCAGACTGTTGCCAGAGAACGTAAAATTTttat-agagaagagaaaaagatccACTATCCCGATGG----AAG--GGCTAGGTCAGCTGTCTGCTCATTAT

a score=30776
s chr3           157763236 1305 + 160039680 TTCTACCCTTGGCTCTTTTATTCCTCAA-CAAATGGACCTTCTAAACCAAAGTTCACAGCAAGTGATTCTAT-AGGCTTTGCTTTCAGATATTATGTCCCATTACCCCTGGTTAG-TAGGAAATATCTT-----AGCAAAAATGTTGATTTGGATTCAAATTCCAGGCCTGAGCCTTACTGTGTGATA-GAGGGACAtttttttatccataaaaatagtaataatactcttagatctgttgtgagattaagctgtaagaagtatgtaca-tactaccaaagtacttggcattcagtGTGGACAAAATATATTCAACATGCTTTCCCCCTCAGAAAA---CAAGGTCACTGTCATGCTATGGACAAACTCTGTATC-AGATTTAATTACACCGGACGCTGTGCTTCCCCTCAGGGACATAATGATCACTTCCCCCTCAAGACAGCTGAGCACTCTGAGATGTGAAAGGATCCAGAACCGAAATGCATCAGAGTTTCCAGC-AAGGATTCTAAAAGACTCCACTTAAGTAGAAATGTTTGT----------------GCCTCTCTCCTTT---------ATTAAATCACAGAAGCATAGCTTTTATCTTCCCTGTGGCTGGGGAGGAAAGTTTGGCAGTCACATCAGAATGGCTCAAGGGTGTGTTTCCTGAATGTCGAGCTCGTCCTCCATGGCTTTAACTGAATTGAGATCAAA-GCTTATTACAAATATCTGTTTTCCCCAGTGGTAAGCCAAGGAAGGCTTTGTCTACAC-------TAACCCAACCACAGTGTAGCTCCTTTGAAATCAAGCTGACTGTGAGTGAGATTTT-TAAGGGAAGTTACATAAGCAAACCTTCTTATTTCCCCATTTCTGTATTTCATTCAGAAAAACTGCCAATAAATATGACAAAGGAACCAG--TCTTAAGAGCACAGCCCACACTTCC-ATAACTT---TTTATGTCTGAC--AATCTCATTCAATAGAATCTGGGGTGTCGA----------------TTGTGTGAGAAGC-CCCATTTTGCTCTCTTGGGTAAGAGAATATAAATAGAATTAGGTCAGCACACATTCCTAGGATAAGATAACCATATGTATCTGGGCTAAATAAACATTTCACTTCAAAGAGAGAGTCACCCATCATCCATCACCtttattttttttttttttttaCACA-AGATTCCATGATCTGCATTACAGAAA-TAGTTTTTTCTTCCTGGAGTTTCTCTGAAGCCTTGA---------TATCTTTTTCAAATCATTCCTTTGTGCATAAAATATAACATGGCATAAAAAAAATCGTGGAATAacttcctgta--------ccctcaccatctaccctgtaca---acagttccatggacatgagac-cagct
s HiC_scaffold_1 145027016 1351 + 233722169 TTTTGCCGGTGGTTCATT-ATCCTTCAAGCCAATGGtactttttc-ctaaaattcacagCATATTATTGTGGGAGACCATGCCATCAAACAATTTGTTCTAATGCTTTTagttaaatagaaaatattttttgaaaatgtaaatgtagACCTTGATTCAAATGGCAGGCTTCATCCTTGCTAGGTGGTGTGAAGAACATCTCCTTAACCATAAAAGTAGTAA----ACTTTCAGTTTTCCTGTGACATTAAAATAAGAGAGGGATGTCTAACTCTATCCACATGCTTTGCATTTGGTA-GTTCTAAACGTATACAACACTCAAGTGGCTAAAGGAAAGGCCAAGTTCACTGTCATGCTGTTGCTGTATTCAGCACCCAGACTTTACTGGGT-GGATCCTGTTTCTTTCC------ACACTAAGATCACTTCCTCTT--AGAAAGATGAGCGCTGTCAAACATGATAGGATCCAGACTTAGAGTGTATCACAGTTTCCATCCAAGCAGCCCGCAGGGACCCACTCAAGTGGAAATGCTCGTATCTTTATCAGCGGATGCCTCACTTCTCTTACACATCTATTAAATTAAGGAAACAT--TTTTTATCTGCTCTGTAGCCAGGATGGAAAATTTAGTAATCCCATCAGAATTACTCCTGGACGT-TGTCCTGAACTTTCAGCTCATCCTTCGTGGGTTTCACTGATCAGAGATCAAAAGCTTACTGcaggaattttttttc---aataagaAGCCAAAGCAGGGTTTTTCTAAACACATGATTAATCTGACCATAATTTTGTCTCTCCGAA-TTGGACTGAGTTTGAACAAGATTGCATAAAGGCAAAAGCATAAGCAAACCTTCATATTTCTCTATTTCGGTCTTTCTGTTTGAGAAACTGCCAATAAAAGACATAAATGACTCAGATTCTTACCGCTTCTATTCCCATCTCTAATGACTTAACTTTATATCCAACAGAATCTGATTCAATAGGAt-----gtgtcaggaaaaaaaaaaactatttgggTAAGATGCTTTTGTTTTACCTTTCCAAGTCATGAAATATAAACAGAAGAATGACAGACAATGTTCATGG--------AACTAGGTATATCTAAGTTAAATAAACAACTCACTTCAAAGGGAG---------TCATGCCTTTCCTTTATCATCTTAAAACTTTTATACCTCAATTTCATCATGCACGCTGCAGGCATTTGTTATTTCTCGTTGGAGTATCTCTGTAATCTTGgcctttttactctttttttatcACCATTCTTCT-TGCATTAAATATTACATGGCATAAAATAG--TGTGGATT---TTCCTGTACTGGCTCCCTCACACCAATGGTCTTGTAcattttcagattctttttcatgaaacacAGCT

a score=12155
s chr3           157782279 307 + 160039680 AAGCCGGCTTTCTTAGCAGCAAAAGCAACCATCCTGCAGCAGCTCTAA-------GTACAGCCAAAAAGCGTAATAGCAAAGGTCAGAACTGTTTTGG--AAAGCAAGAAAAGTACTAAAATCTAAGTCCCTGTCCAGGCATTAATCAAGACCTAATGAAAACACTGCTTCTGTATTCAAAGTGTGGGCAGCTTCTGTACAAACTAGAGATGGCTTTCCTATGCATACAACTTTTGT-----TGATTATATCAGGTTTCAAAACTAGTAAAGAGCACCAAGGAAAAGAAGGGTAAAAATTACCCAGAAAGATGGTCTTGCa
s HiC_scaffold_1 145044975 319 + 233722169 AATCCAGCTTTCTGAGCAGCAGAAATGCCTATTGCATCGTGGCTCTCAAACCTTGGCTCATCCAAGCAACTTAACAGCAAAGGTCAAAGCTGTTTTTGCAAAAGCCAGGAAAGTACTGAAATCTAAGATGCTGCCTGACTATTAATCAAGACTAAATGAAAACACTGTTTCGGTATCTAAAATGCAGACATCTTCTGTATAAACAAGAGATTTTTTAATTGTGtacaaaactttcattttagtGATTACATTA-TCTTCAAAACTGGTAGAGTGC-CAAAGAAAAAgagtggaaaataatttttaaaaaaatagctttgta

a score=28015
s chr3           157813384 1433 + 160039680 AAGAAAGAAAAAG---AAACTCCACCGAGTACTCTtgaaatgagaactgaatattgacactaactttggcaacatgaaagtcctaagcaatcttaat--tagtcattaagcaaaatgactccgagagagattgggaaacaaggagtgcatggactctataaataacttcttcaaca----tttccataaaaggaggagtcatgggatcctagctggaaggaataagtgCCATTCTGGGATGGTATCTTA-CTCAAGTTTACAAATGCTGTGTGTTTATGCGGGGGGGGGGGGGGGGATTCATTATGTGGGA-TGGCAGGAAGTAATT-----CAGGAGTATGTATGTGACAGTCAAGAGAGCCTGGACCCAGAACCCAAAATGAAGGAGTGA---------------------------GAAATGGTATAGAAAAGGAGGTGG---------------------------GAATTTCATGGATTTGGTGTTTGGAGAATCAAGAGAT----TGTTTGGATC-----------------------AGAAGCAAGGTCTCCTACTGTGGACCTAAGGGGAAAGGCAAACGGCTGAGGACAAGAAAACTGTCCTCTGTAAGCTGCAG--AGGAAC-TGACTGACTAGGAAGATACTA--GCATCTACATTTCAGTGTTTT--CCACATCATTGACTTCGCTAAGTCGCTTAATTTGTGCCTAGTTTAGACTAAACCATCCGAGGATGAACTAATAATCTCCACCTGACCTAGTTTCTGATTAT-CATAAATGTAAGTGACAAAAATGCTAAGTCTTGTTCACAAATCCACCACTCTGCTGAGC------CCTGTCCACAACAGATGCTGCTCCCAAACATGGCAAGCAAGTGTGTTAACAAATGAGGACCC---------CTGGCTCTACAGCTTTTATCA--CTAATGATCTCACTCACAAAACATCCCCTTTCTCACCTCATCCTAGCACAGTTTGAAGAACCCTCCCAGCTGACTTTTTT-------------------TTTTTAAGATATGTAGCTGTTTTTAAGAAAGTATCTTATGGTTGATAGCCATCTATTTTTAATTAGCCAAA-CGTTGTTTTGCAGTGTCTAATGGAGAGTTTGAGAGCTTAAAAGCTCCATGAACTAAGAAGAACATTTTGCCAAAATCAAATCAACCCAGAAGAATGAAAAGTTTGGGTTGACTTCAAAACTTTATGCTTCCAAGAGAAAGAATGTGCAAAATCTGAAGTTCTAGCTTTTCACATTCTGACATTAAACATGTGAAGATTCTAGGTCAGGGCTGGATTAACAGCATGAAAATTTGGGGATGGATCCAACTGCGGAGTGCACT---AGGATTTTTAAGCAGAACCTCACTGAATGGTCTGCCTAGCAACCATATTTTTTTCATTTCAATTTGTTTATTTATTTATAACAATAGAAATTCTGTTTTAACTCAGCCTCAAGCTATTTCTAAAGAGGTCACAGAATGGATGGCTTTGTGTATCTCTCAAGAAAAGAATAGAAAATCTGCTATTCTTCAACCAGTGTAGGATAT
s HiC_scaffold_1 145082050 1492 + 233722169 AAGAAGGAGAAAGTGAAAACTCTGCCATGAAGTTTTGAAATGAAGGTTGAATACTGACA-TGATTTTGATATTGAGAAAGCTTTTGGAAAGCTTCATAACAGTTGTTTGACAGAATTTATCCAAGAGaaactgggaaacaaag---gca-agacagtgTCAGTAAACTTCCTTACAGGACTTCCTATAAAAGGAGGAATCATCAGATCTTATC-AACAGGGAGATGTGACATcttagaatgatttttaaatttaagattagaaatgttttatttttgcactAGCAGAAAAA-----ATTGATTATGCAGGAATACCGGTGAATAATTATACACATAAACAC-CATAAGGAGGTAAGAGCAGGTTAGGTCCAGTGCTCCAGGGGGTGGATTGACCTCAAGATAGCACATTAGCTTCTCtagaaaattaatggaaaaggAAATGGATAGTGGATATGTACTCCAAAGCACATGGAGTTAGTGGATTCATTATTAGGAGG--CAAAGGATGTTCTGTTTGGATCCCTCCTATTCTCTCAGAGAAATCAAAAGTTAGCTCACCTACTGAGAATCCAAGGGCAAAA-CAATGGATTGAGGAGAGGAAAACAGTCCTCTCT---CTGGAAGTAGGAGCACAATCAACTAGAAAAATGCCATGAGATTCACATTCCATTTCTTTGCCTATGTCATTAATTTTACAGAA------------------------AACAGTATATCCAAGGGTGGACTGA------ATGCATAGCCTATCTTCTGAATATGCTTGAGTGTAAAGTTCATAA----TCTATTTTGTTCAAAAATAAATCACTGGGCTTAGAACATTGCCTATACACAGGGAATGCT----CAAAGGATGTTTGATAAATTAATTAGTGGATGAGAAACCACTGTCTGGTCAGCCCTTCTGTTTGTTTCAGGATGGTCTTCTCATCCA-AAAACATGCACTTTCTTATCTCATCCTAGCACATATTTAatag--------attgatttttttaaatatatggccaattgattttttaaaatatatagtcaCTTT-AAGAAGGTGTTTTGTAGCTTactttcatctatttttaatttgccAAAACATTATTTTACGGTATCTAGTGGAGAGTTT--------AAAAGCTTCATGAACTGAGCGGCAAATTGTGCCAAAATTAAATGAACTAAAAAGCATGGAAAGTTGAGGTTGAGTTCAAAGTGTTAAGTTCCCAGGGAAAATAAGGAACAGTCATTGGAGTTTTGGTGTCTCACATTCTGAAAttaattatatgaaattcaagAGTCCAGCCtggatgaaaagaataaaacttagAGGGCAAAAACAACTGCAGCGTctactgaaaaagactgaaaccAGAAGCTCAGGAAGTGGCTTTCCT-GCATCCAGACCATGTGCGTTTCAATTTG--CAGTTTCCAGCATCAACACTGGATCTTTTTTAACTAAATCCTGGGCTACTTCTAATCATTGCCTAGAA---AGAGCTCTGGGAGTTTCT------GAGAAGGGGAAACCTGCAATTCTTCAACCCCTGGGGAATAT

a score=75035
s chr3           157816342 1464 + 160039680 aagttaaaaattccttaattt-tttattcctggtaccactaccaca-------gggcaatatacctgatgtaatgaaaagaaaaacaaaaagacaaagctacaacagataaaagacctcaggaatgtacatctagttgacactacattgcattaatcaatagctgtactttttgcaaactgtagctatgacagtcctgaacaagaagggtttcctgtttaagctgcagtaacttttctgactatggatcatcattccttctgtggcagatttttacagttcctctaatgcatttgggacgactgtctcaaagtaacctgcagctttcctgataactcctcgctctctctcc--tgataagaactgtag-ccgtttctgttttattttaaaaccttctgctgccatatccaccacttccacccccagatccatagccaccaccatagggacagtctgagcttcttccaccaaaactgccccccttcgtgggtccataatttgattgttgctgtccactataattcccaaagtcattatagtttccaccaccacaatagttaccaccaccaaaatttcctccttcattgtaaccatcata--tCCTCCTCCTCCACCACCATATCCACCACACTGATTTCCATATCCTGGTccaccacctccataacctcctctactactgtaaccaggaccaccaccatagttgccaccatcacctccaaatccattatatccaccatcaccatctccataactacctatgctgccaccacctccaccacc-ataggcacctcttccacca------aagtttcctccaccacctccaAAGTTTCCTCCACAACCCATAAAGTTGCCAGATCCACCTCCACAACCTCTCTGTGATCCAGCAGACTGCATCTCTTGTTTAGAAAGGGCCTTTTTCACTTC-ACAATTATGCCCATTAATAGTGTGGTATTTCTGAACAACAATTTTATCAAGTGT-GTCATGATCATCAAAAGTTACAAAAGCAAATCCTCTCTTTTTCTCACTCTGCCTGTCTTCCATAACCTCTATGGTTTCAATCTTGCCATACTTTTCAGAGTAGTCTCTCAGGTTATATTCTTCCGTATCCTCTTTAATACCACCAACAAAAATTTTCTTCACCGTTAAATGGGCACCAGGCTTTACAGAATCCTCTCTAGAAACAGCTCTCTTTGGTTCCACCACACGCCCATCAACCTTATATGGCCGAGCACACATTGCAGCATCCACCTCTTCAACACAAGAGTAGGTCACAAAACCAAAGCCTCTGGAACGTTTGTTTGGGAATCTCTCATTACCACACAGTCTGTAAGTGTGCCCCATTTCTCAAAATGTTCTCTTAAGCTATCATCTGTGGTTTCAAAGCTCAGACCACCAATAAACAGCTTCCTCAGCTGCTCTGGTTCC----------------TTTGGGTCATGGCC------------------CTCCATTTTGAGACTGGACTCGCCTCTTCCAACTCGAGTTC
s HiC_scaffold_1 164113270 1413 + 233722169 aagttaaaaatctcTTAATTTATTCATTCCTGGTCCTACTACCACAATTTACAGGGCAGTAT--CTAGGGCAatgaacagaaaaa------gacaaagctACAAAAGCTAAAAG--CTCGGGATTGTACATCTAATTGACACTGCCTTGCGTTAATCAGTAGCTGCACTTTTTGCAGACTGTGACTGTCACAGTGCTGAACTAGA-GGGTTTCCTACTTA-GCTGTAGTAACTTTTCCAACCATGGATCATCATTCTTTCTGTGGCAGATTTTTACGGTTCCTCGGATGCATCTGGGATGACTGTCTCAGAGTAACCTGCAGCTTTCCTAACGACTCCTTGCTGTCTCTCTGTTGCTAAGAActattgtccttttctgttgGTTTTTAAAACCCTCTGCTGCCAAACTCATCACTTCTACCATCAGATCCATAACCACCACTACTGGAGT-GCCAGAGCTTCTTGCA------------------ATCTGTTTGTAATCTGTTTGCTGTTGTCCACTGTAATTTCCAAAATCATTATAGTTCTCAACACCTCCATAGCTACCACAACATAA------CCATTTATTGGAACCATTGTAGGTCTTCTTCCTCTACTACCGTATCCAACACTTTGGTTTCCATATCCTG----------------------------------ACCAGGGCTTCCACCATAGCTTCCACCATCACCT----------TATATTCACCATCACCTCTTCCATAACTACCTCTGTTTTCATCTCCTGTACCACCCATCATGGTCTCTTCCATCATGGCTGAAATTCCTTCCATCACCTCCAGAATTTCTTCCACAATCCATAAAGTTGCCAGATCCACCTCCATAACCTCTC-ATGATCCAGCAGACAGCACCTCTTGTTTAGGAAAGGCTTTTTTCACTTCCACAATTGTGTGGATTAATAGTGTGGTATTTCTGAATAACAATTTTATCAACTATTATCATGGCCATCAAAAGTTACAAAAGCAAATCCTGTTTTTCCC---CTCTGCCCATCTCCCATAACTTCTATGGTTTCCAT--TGCTATACTTTTCAAAGTAGTCTCTCAAATTGAATTCTTCTGTATCTTCTTTAATACTGCCAACAATAAT--------CAGTTAGATGGGTACCAGGCTTTACTGAATCCTTTCTAGAAACAGTTCCCTTTGGTACAACTCCACGCCCTTCACCTTTGTGTGATCGAGTGTACTTTGCAGCATCCATCTCTTTAACACAAGAGTAAGTCACAAAACCAAAGTCCCTGgagcattttattgaggatctctCATTATCCCATGATTTGTGAGTGTGCCCAGTTTC-CAAAATATTCTCTTA-------ATGTGTAGTTTCAAAGCTCAGACCACTGATGTACATCTTCCTCAGTTGCTCTGGCTTCAGCCTGGCGGGGGTGACGAGGGCCAGAATCAGAGTAGAACAGTTTTAACTCCATTTTGAGACTAGACT----TCTTGTAACTTAGATTC

a score=26643
s chr3           157816647 1106 + 160039680 aacctgcagctttcctgataactcctc--gctctc-tctcctgataagaactgtagccgtttctgttttattttaaaaccttct---gctgccatatccac------------cacttccac----ccccagatccatagcc-------------------accaccatagggacagtctgagcttcttccaccaaaactgccccccttcgtgggtccataatttgattgttgctgtccactataattcccaaagtcattatagtttccaccaccacaatagttaccaccaccaaaatttcctccttcattgtaaccatcatatCCTCCTCCTCCACCACCATATCCACCACACTGATTTCCATATCCTGGTccaccacctccataacctcctctactactgtaaccaggaccaccaccatagttgccaccatcacctccaaatccattatatccaccatcaccatctccataactacctatgctgccaccacctccaccaccataggcacctcttccaccaaagtttcctccaccacctccaAAGTTTCCTCCACAACCCATAAAGTTGCCAGATCCACCTCCACAACCTCTCTGTGATCCAGCAGACTGCATCTCTTGTTTAGAAAGGGCCTTTTTCACTTCACAATTATGCCCATTAATAGTGTGGTATTTCTGAACAACAATTTTATCAAGTGTGTCATGATCATCAAAAGTTACAAAAGCAAATCCTCTCTTTTTCTCACTCTGCCTGTCTTCCATAACCTCTATGGTTTCAATCTTGCCATACTTTTCAGAGTAGTCTCTCAGGTTATATTCTTCCGTATCCTCTTTAATACCACCAACAAAAATTTTCTTCACCGTTAAATGGGCACCAGGCTTTACAGAATCCTCTCTAGAAACAGCTCTCTTTGGTTCCACCACACGCCCATCAACCTTATATGGCCGAGCACACATTGCAGCATCCACCTCTTCAACACAAGAGTAGGTCACAAAACCAAAGCCTCTGGAACGTT---TGTTTGGGAATCTCTCATTACCACACAGTCTGTAAGTGTGCCCCATTTCTCAAAATGTTCTCTTAAGCTATCATCTGTGGTTTCAAAGCTCAGACCACCAATAAACAGCTTCCTCAGCTGCTCTGGTTCCTT
s HiC_scaffold_1  23395863  971 + 233722169 AACCTGCAGATTCCCTG-TCACTTCTCTGGCTCTCCTCTCCTGGTAAGCTTTGC-----CTCCTGGCAATATTTAAAACCTTCTCCCACTGCCatagctactgctgctgctggcaCTACCACAGCACCTGAATTTCATGGCTTGGTAGAGTATTGGACTCTACCACCATAGAGCCTA---GAGCTTCTGCTTCCAGACTTTCCTCCCTTCACGGGTCCAAAATTTGAAGACTGAT---TGTTATAACTGCCAAAATCATTGTAGCTTCCACCACCTCCATAATTGCTTCCACCA---TTACCAAATCCACTGTAGCCATC---------TCCACTGCTGCCATGT---------TGGCCTCCAAA---------ATCATCTTGATCACTTAAGTTTCCTCTGCAACCAAAACTGTCA------TTGCCACCAAAACCACC---TCCATGA---CCACCACCAAAATTTCCAGAGCCACTT---------------------------GGACCTCTTTGGCCAGA-----------------TGAAG-------CACTAACCATA---------------------------------------------------CCCTGCTTTGATAGAGCTTCCTT-ACTTCACAGTTGTGGTTGTTCACAGTATGGTATTTCTGAATTACAATCTTATCCACACAATCGTGGTCATCAAAAGTTACAAAAGCAAAGCCCCTCTTCTTTTCACTGCCTCGGTC-----------------AGTCAATTTCTCCATACTGTTCAAAATAATCTCATAGGTGATGTTCTTCAGTGTCTTCTTTAATGCCATCCACAAAGA---TCTTCACAGTTAAATGGGCTCCTGGACTTTGAGAATCTTCTCTTGAGATAGCTCACTTTAGTTCCATAACTGTTCCATCCACTTTGTGCAGCCTTGCTTTCAAGGCTGTGTCTACCTCCTCCATGCTGGCATAAGTTACAAACCTGGAGGCCCTGCAGCCCTTTGTGTTTGGG--TCTCTCGTGGCCACTCAATCTGCAAGTGTTCCTCACTTCTCAGAATGGCTTCTCAGCCTCTTCCTGGTTTTGTCAAAGCTCAGCCCTCCAATGCAGAGCTTCTGCAGCTATTCAGACTCCTT

a score=21859
s chr3           157816765 997 + 160039680 ccaccaccatagggacagtctgagcttcttccaccaaaactgccccccttcgtgggtccataatttgattgttgctgtccactataattcccaaagtcattatagtttccaccaccacaatagttaccaccaccaaaatttcctccttcattgtaaccatcatatCCTCCTCCTCCACCACCATATCCACCACACTGATTTCCATATCCTGGTccaccacctccataacctcctctactactgtaaccaggaccaccaccatagttgccaccatcacctccaaatccattatatccaccatcaccatctccataactacctatgctgccaccacctccaccaccataggcacctcttccaccaaagtttcctccaccacctccaAAGTTTCCTCCACAACCCATAAAGTTGCCAGATCCACCTCCACAACCTCTCTGTGATCCAGCAGACTGCATCTCTTGTTTAGAAAGGGCCTTTTTCACTTCACAATTATGCCCATTAATAGTGTGGTATTTCTGAACAACAATTTTATCAAGTGTGTCATGATCATCAAAAGTTACAAAAGCAAATCCTCTCTTTTTCTCACTCTGCCTGTCTTCCATAACCTCTATGGTTTCAATCTTGCCATACTTTTCAGAGTAGTCTCTCAGGTTATATTCTTCCGTATCCTCTTTAATACCACCAACAAAAATTTTCTTCACCGTTAAATGGGCACCAGGCTTTACAGAATCCTCTCTAGAAACAGCTCTCTTTGGTTCCACCACACGCCCATCAACCTTATATGGCCGAGCACACATTGCAGCATCCACCTCTTCAACACAAGAGTAGGTCACAAAACCAAAGCCTCTGGAACGTTT-GTTTGGGAATCTCTCATTACCACACAGTCTGTAAGTGTGCCCCATTTCTCAAAATGTTCTCTTAAGCTATCATCTGTGGTTTCAAAGCTCAGACCACCAATAAACAGCTTCCTCAGCTGCTCT--GGTTCCTTTGGGTCATG
s HiC_scaffold_1  21155181 818 + 233722169 CCACCCCCATATAGCC---CAGAGCTTCTGCCTCCAGACTTTCCTCCTTTCATGGGCCCATAATGTAAACACTGAT---TATGGTAATTGCCAAAATCAATGTAGCTTCCGCCCACTTGAAAATTGCT---------------------------------------------TCCATTACCAATTTCAGTGTACTGATTCCCAG------------TGCCACCAAAGCCACGTGGAACATTGAAGTTTCCTCCTCGACCACAATTGCCA---------------------TAGCCACCAAAACCACCTCGACGACCACC------ACCAAAATTTCCAGCACCATGTGGACCTCTTTGGCTA---------------------------------------------------------------------------GATGAAGCATTAGCCATCTTCTGCCTGGACAGGGCTTTATTCACCTCACACCTGTAGCC-TTGACAGTCTGGTATCTGTGAATCACAGCCTTGTCTGCAGAATCATAGTCAACAAAGGTTACAAAAGCGAAGCCCCTTTTCTTTCCAGTGTTTCGGTCAGTCATGATTTCAATAACTTCGATTTCTCTATATTGTTCAAAATGATCTCGTAGGTGATGTTCATCAGTA---TCTTTAATGCCACCGACAAAGA---TCTTCACAGTGAGGTAGGCACCCGGTCTTTGGGAGTCTTCCCTGGATACAGCTCTCTTGGTTAGCACCACTCTGCCATCTACCTGGTGTGGCCTGGCCTTCATGgctgcctccacctcctccacGCTGGCATAAGTGACGAACCCAAAGCCCCTGGAGCGCTTGGTGTTCGGATTTCTCATTACCATACAGTCGGTGAGTGTTCCCCACTGCTCAAAGTGGCTCCTGAGACTA-----GGTGGT-----GGCTCAGCCCTCTGATGAAGAGCTTGCAGCGCTGCTCTTCAGTCTCCTTGGGAGATG

a score=5580
s chr3           157817217 177 + 160039680 CATCTCTTGTTTAGAAAGGGCCTTTTTCACTTCACAATTATGCCCATTAATAGTGTGGTATTTCTGAA--CAACAATT--------------TTATCAAGTGTGTCATGATCATCAAAAGTTACAAAAGCAAATCCTCTCTTTTTCTCACTCTGCCTGTCTTCCATAACCTCTATGGTTTCAATCTTGCCATA
s HiC_scaffold_1 190238883 193 + 233722169 CATGTCCTACCTGGACAGGGCTTTCCTCACTTCACAGCTGTGGCCATACATGGCGTGGTATTTCTGTGTCTGTGGATTCTGGACTCTGTGGATTATCCGCAGACTCATGGTCACCAAAGGTTACAAAAGCGAATCCCCTGTTCTTTCCACTGCCTTGGTCAGTTGTAATTTCAATCACTTCAATGTTTCTCTA

a score=22550
s chr3           157834023 828 + 160039680 AGTTTTTTAAAG----GTAGATGAACTCTTACAAAC-CTGGCATAGTACAATAAAGCAATACTATGGGAAGAAGTCCCCAGGG--AGAAGTTCCAAAGTTCCGGTTCCATTGCCTGGTTCTGCTATACTTAGAAGGCTCCCAAACTTG--CCTAAGTAACTTCATTTCCCTCTCTAAATTTGGGTTCC-----TTCTA--TATCTGGCCAATGGTCATTTTCAGAAAAGAAGGGCAGTCCTAGCTGCAGGAGCACTTT-AAGGAGTTGTTTATTATGAG----------TAACAGATGTAGTAGGAGAGGTGAGACTGAGTACAGACCTTTCTAGACATT-TTCTACAAGAAATCCTGGCAGCTGTAATTCCCTTAGGTGG-----CTGGTCATCATCAGAAGGCCTCTGAGAGATGATCAAGAGGTCAATTTTGA--CAGAAAATGGT--AAAAATTTGTGGATTGTCCGTATTACTTCCCATTCCTGACAACTGTTCCTTCTTAAAGGCCAGTTCTGAAAGGTCAGAGTGTGGAAATACATGCGCCAGAAAAAGGCTTGCAGCAGGGCTTT--TTACCATAAATGCTGCAAATTAGTGCTTCAAGGTCCCAGTGAGAAAAGACCTTTTAACTTTCTCTGCTGTTGACATCAGGATAATAACTGTGGGAAGAGTGGAAGGGCAGATCCTG-TTTAAAAAAGAAAATTGGACCT-TCAGGGAGAAAAGGAAGGATCTTCGTATCCTTTCCCACAAATGCAAGACAATTGTCCTAGGAAAACACAGCCTATGATCACAGCAC---AGCAAGGCAAGTTCCCAGAACATCTGAGAAATGGAAGTGTATTCTCC--CTTAAACCGTATATTCTTTTC
s HiC_scaffold_1 145099752 835 + 233722169 aattttttaagaaagaggaaatgaataCTGGTGGACTCTTGAAGAATACAGAAAGGCAATCGTGTAACAAAGAAGACTCAGAACTAGAAGTTCCTAGGTTTGGGGTCTACCACA-GGTTCTCCTCCAGTTAAGAAGCTGTCCACGTTGGTTCCAAATAACTTCACGT---------AATCTAAGTCTCAGCAATTCTACTTATCTGAC--ATTGCCATTTTCAGAAT-GAAAGGTAATCACAGAGATGAAAGCAatctcaattatttttcaaatatgaaacTAAGATATTAACA--CGTATTAGAGGAGATCAGATGGAACACGTATCTTTCTAAATATTGTTATGCAAGAA-TTCTGGCAACCATAATTCCCCTAGGTAGATAAACTAGTCATTAGAAGAAC-CTTCTGAGAGCTGACCAAGAGGTCAATTTTGAGACGTTATATGGCCAAAAAAAGTTTGAGTTGTCCATATTATCTCCCCTTCCCAAAAGCTATTGCTTCTTAAGGTCATTTTCAGAAAGGTCAGGAAATGGAAATACACAcatcagaaag-gactgaaaacaGGATCTTCGTTCCCATAAATCCTGCAAATGAGGG-TTCAAGGTCCCAGTGAGAAATGACCTTTAAACTCCCTCTGCCTTCCACATCAGGATAATAACTGTGGGAAGGAGTGGAGCTcagatctcattttttaaaagacaataaaagctGTCAGGATGA----GAAGAATCTGGTTATACTTTCCCACAAATGCTAGACAATGTTATTAGAAAAGCATGTTAAACAATCATCCTACAGAAGCAGGGCCAGTTCT----------------TGAAAGCATATTTTCAAGCATAAAGCATATTTTCATCCC

a score=15006
s chr3           157834956 2045 + 160039680 TGAGAAAAACATTGGTCTAGGACAGAAGCAGTGGGGGACAGAATGAAAAAAA----TAAGGAAATTATGGACCTCATGATAGAGAGTCATTGAACTTTCTTGTTCAGCATGAAAGAAGTCACCATAAAACATGGGATTAGAAATAGGGGTTAGAAAAATAAAAG-------GTCAGCTGTAA---CTTTGTCATAATTACTTTCAATGAAAAGAACatatttataataaattaatgaataaataaattaatGAGTAGCATATTATCCTTAATCTACTTTGAATA---TCTCGAAAGTAGGCATCAGGAAATACATTAAAATTAATGAACTAATCTGATATCTACTCATTGAACAAATACAAGAGAGACTTTTTTAGGA-ACAAAAAGT-AATTTTTACAgggctggaagaaatgactgactgggcaaagtattt-gtcacccagtgtaatgacctgaattcagatacctggcac------ctacatcaggcaagggcagtagcaaccatttgtaactcaagcacatcggtggctggatg-ggaggcagagcaggagaatctccaagagctcac----aagctat-ctagcctggcatacacagcagaaaaataag--agaccttgtctcaaggtggaaggcaagaattaacacctaaggatgtcctttaacctgagccct------------gtggcacttgta--------------------------tgcccaca---ctcacatgcaTACAAATCCACACGCAAATAAT-------AACAATAG-------AATGTCTACTGTACTTTGTAG--------------------CTTAGTGTTGTTGATGCTGTGTAAATCCA--------------TAAACAGATA-TAGT-TATGACTTCTGATAAGAGCAGTAGTG-----TGCTATAAAAGAAC---ATGGGCCTAGA-GCTGGGGTATTCTGGAAGTCCTCCAACTCAACAATTGATAAAAGAGGGTCAGTAAGAGAATTGGTGAGTGCTTTATCTTTCCAGACCTTTCTTTTATCTTTGCTATGAGAGGATGCAATAGAATCCCAGA----TATGACTGA----AAGCTC---ATTCCACCA-GTCCAACAAGTTTTCCACTCTTGAATCTCCTATTTCTGTCCAAATGTCAAGACCATGGTGAATTTCCTCCCCTTCAAGTGAAGGTAA-GGAATCTCTCCCCTTTCTGACCTGGATTATTTCTTACAGGTACA-------------------------------------------------------------------------------------------TTCATAACTCCCCCAACAAGGAC--CAGTGTCAT--CTTCAATCTACACAGCAGGAAAAAAACCAATGAAGTCAGCCCTCACGCCCCATAGTGCTGCACCAAACATTG---CTGAAACTCAGCCCCCAGGCTGCTAATAGTAA----------CAGGGTCAGCATATGCACAGCACCTTCCTGAGGCTGAGGAGGAGCTTCATGGCCATGGGACAACATCTCTGAGTGACCATCTGGCAGTGGTCCAGCCTGAGTTCACATTTATGACCTCATTTGTTCCA-------GTCAAACTA-------ATATTTCATTACTTACTTACCATCACTCTTGCTTTTCGCCCACCAAACCCTACTGAGGGCTACTGGCTATAAAACACAGGAATAAGCAGATGACCCTATGTTACTGTCCCTT-------CATTACATGCATTCAGAGGGAGGTAG--------AAGTCCTTAGGACACCTGCTGTGGGAAACTTAGTGATAAAGGTTAAGCACAAGATAACAAGGAAGCTAGAGAAGAGGCACACACTTT----TCTA-ACACCAAATA-GCCTTGGCAACTTCTGAAGCACACATCATCTTTTGATtctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacaACTCTA------AAGGGAACATGCCTGCACTGAAAAAAGCAATCTTTTG-TTTCCTATGACTATTTATATTTTCATAGTTTGAGTTACACAAATAATAGGA--ATTTTCTCTTTCAAAAATAAACTGCTGATTATAGTGAATATGATTTTTAAATCACCCAGTTC-CCTCAATCCTCTAAGTCCTCATGTAAACCCAGTTAGCCTCTTTGGCAGGAAAAGCTCCTGGATCCTCTTGCTAACT-------------GATT-CCGTCCTCAGGGCATGTCAGGGCAACAG---TGGAAGGAACTGCA--ACTGAGCATTAAAAC
s HiC_scaffold_1 145101899 2206 + 233722169 TGTGAAAAACACTGGTCTAGGACAGG-GTAAGAGGAGACAGGATAAAAGAGAGAATTGAGGAAATTGAGCTCCTCA--GTGGTCAGACTTTAAGTGACTGTCTTCACTGAGATAAAGCTTTCCACGAATAATGG---CAGAAAT-GgtaatagaaaaacataaaacaattagCCACGTGTAAAAATGCTATCACCATTGGTCTTAGTAAATATAAACTCTTTGCAACAAAT----AAACTAATTAATTAACGGATAATACACTATGT---ATCTATTTcaaatggttttttaaaagtttgcatgagaaaatatataaaaattaatgaattaatttgttATCTATTCATATAACAggtatttgaaagcttcctgTAAGAGACAAAAAATTGATTTCTACTATCC------------------------AGTATTTTGTAGTTTGGTGTG-------GGATGCAGTTATTGAACAAAACTAGCTACgtgaaaaaaatacagaa--------ctgtAACTCGTG-ATAAGGGTGTTAGTCTGCTGTTACAGAGAAAGAGGCGTCTCAGAGGTTGTCTTTGAAGCACTACTATTTCAGCA-AAATACCAAAAAGATCAATAAGTAGTGATCataaagagaatagaaaatagTTACTTTCAAG---------TAActtcatccctttttattttaatgtgacaCATGTAGatattaacaaagaaaacataaaaagtactCTCATTGCttctatggaaaaaataaaaca---aaataattaaagataACAATAGTGAAAATAATGTGCACCATAATCTTAAAAGAATGACAAAAACATTACTCAAAGTATAAGTCATACCCAAAAAAGCCAAGACAacaagacaagaaacaaataacagcacaaaactttctttcagtGAGTTAAAGGATACTAatacaaaggaaacaaattagcatatatgtTGAAGTATTTTTTATATC----AAAGTATTTTTTGA-AACACAGAATAAATTGGGGaacctctccctgcttcctacttCTCAATCTT--------CTCTAAGATGAGAA----CAGTAAAATAACAAGACTGTATGAATGGTACGAATCCCTAAATTACATCAAGTCCAAAGGTCCTCCCACTCTC------CTTCCTCCTGCCTAAGGGTCAACACTGTGGTGGATTTGCTCTTCGTCAAGGGAACTTAATGAAAACTCTTCCAATCCTTAATTTGCtggttttttattggtacaggtaAGCAGGACCTAATATTTACATGCCTCATGTGAAGTTGGCACCTGTACATCAGTTTATTTTCTctcacattcattcatttgttgactACTCATAACTACTCAATGAGAGACACCATTAATATTCCTTTAACTTGTAGAGAAGACGGTAAATCG-----------CCTCTCTTCACATGGTGT--CAATAAGCATCATCTCTAGAACTTCTGCTTTGTACTGTTAGTGGCAGGATTTTTTCCCTAAGGTGCCATATGCAGAGCAGCTGTCTTGGGTTAAGGGCTGGCTTAA-GGTCATGGGACAATATCTTTAAACAGCCACCTGGCCCTGATCCAGCCTAAACTCACATCGATGACCTCATTTATTTCATATTCTGGCCAAATCAGTGATGGACATTTCCTCATTTACCCA-----AATCTTTCTTCT---CCATCAGCACCTATCACGTGCCACTGACTACTAACCATAGGAATAAATAGATGAGGTTATAATCCTGCCCCCTTTGAGACCTCAAAGAGTGATCGAAGAGAAGAAGTAAGTAAAAAGTTTTTGAATGACATGTTCTGAAAAAAGCAAAGATACATG-TAAATACATGGTGATAGAGAAG-----GAGTTCGTGTGTGCTTTAGGCTCTAGAGGCGAAATAGGTTTTTACCATCTCTTAAACATATGCTACATCATGGTAAACATTCACATTTTAAGCCTTTGTtcc---------------------------------------caggggggaaaaaaagaaaaaacaaatagagtTTTAGCACCCAAAGGATCATGCTTCCATCAAGAcctgaaatgttttgttttcctgctagCATTTA-ATTCTCATAAGTTGAGTCATACAAACaataggaatattttctctatccAAAAAGTCATGTCGACCAtattaaatatgcattttaaatgacCTAATGCACCACTCCCTTGTTCGTTCACGCACAATTCCACTATGCCTCCTTGACTGGGAGATCTCACATGCATTCTTGCAAACTGTACCTCATGGAGGATCACTGGGTTCAGGGGAGGCCAGAGAATCTGTGATGGAGCAAATCGCAACACTGAGCACTTGAAC

a score=17179
s chr3           157852559 620 + 160039680 AATTTATGAGGAGAATAATCCCAGAGTAAATTGTGAAGTATAGACATCAACTTAATAAATGGAAACACCTGAAGCaacatgcatagaggccaattgtaacctctagtgtcagacttttggactgtgattatc--atttttTTCCTCTTAGAGACAAAGGAAAACT----TAAATTCTGGTCTCCCCAAGGCTCTTTATC-------------CCAAGATTATAGTGAATTAATAAAGCAAGGGTGAAGCATGAGCAAATGATGTTCCTTGCAAATCAGAGATGATTTTCTCAATTTAAAACAAAGGTAATTGTCAAAAATAAAAATAAAACGCCATGATCTTCCTGATCTTGAATTTAATACAGTCCAGAAACTTCTACAGGACAGCTTCATAGTGCAAAGCCATTTAGAGTTATCCATCTCTGACAAGGAGCACATAAATACAGCCTGTAAT--CTTTCTTTTTTATGAGCCTTCAAGATGTTTCTCCCTGAGCAAGTGCAC-TCCCTCAC-TCTGATCCAACCTCCCTAGTTCTTTCCCAATTGCACATTTCTTGAGCTTAGCATCATGACATCTTGGTAACCAGATTCACAAGGGAGTAAAATAAAAGGTTTGGTT-----------TTTTTTTTTTCTTTTATTTTCCAA
s HiC_scaffold_1 145123397 616 + 233722169 AATGTACCAGAAGAATGGTTTCGGCTGAAATCATCCACCGTGGGTGTCAGCT-------------CACTGCAAGCAGCCCTCACAGAGACCAATTGTAACTCTTCACAGAGGACTTTTGAACTCTGACTGCCGAAGGTTTTCATCCTGAAAGGTAGAGGAAAACTGAGTTAAGCT---GTTTCTTGCAGCCTTTGCTTCAGACATTAGATTGCAAAGAACATAGTTGATGACTAAAGTTGAAATGAAGC--TAACAGATGATGTTTCCTTCAATTCAGACACAATCTTC--AGTTTATAACAGAAGTggctgacaaaagaaaaaaaaa----------------tgatcctgACGATAACACTTTCCAGAAGCTTGGAAAATGTAACTTTATAGCATGAAGTCACTTGGATTCATCCATCCCTGACAAAGAGCACATAAACATAGCCTGTaatactttttctctttattaggCTTCAAGATGTTTCTTCTCCAGTTAGTGCACATCTCTCCCTTCTAATCTAATCTGTCCTGCT-TTTCCGAATTGTGTATTTCTCGTGCTTAGCATCATGTGATCTTGATAACAAG-TTTGggagagaaagaattaaaagatttttttaaaactcacacTTATTTATTTCCCCCACTTTATAA

a score=14696
s chr3           157857621 665 + 160039680 aataaccctacttttaaaatggggtacagagctaaataaagaattctcagttgaggaa-actcaaatgATAGAATTCTAGAGTAATAACACTATTTTCCCTTAACTACA--AAGCATTGAAGAGAAGGGATACAGAGCCTATCTGATTTA-GGCATCACATGATTGCCTTAAATTAGACTACCAGGATAATCT--GACTACAAAACTCATTTCATTACTTATTTTACAGCACTTGAGAGCAACCTATTTTGAGTAATTTGGACAAGGAAATTAAAGCTTTGTAGAGAAGAAAAATAGTACAATCTGCAGCTATATAAATGAAACTACTCAGGAAAACACAAGCTTTTCTGTAGCTTTATTCGTGTTTCAA----ATTAA--AAGTCTGTACAGAAA--GTTCA--TGAATAA--------CTAATAAC-CGGACAGCACCGTCCTGGATGTGGACAGAGATCAA----CTATGAAAGAGCAGACGCAGCTACAGAGCATTAAACTGCAGCTAAACTAAGCCTGAACCCTGAAATGTTGAGAGAAACA----------------TACAGCCCACCAGATCTCATATGTGC--TTGAAGTAGATCCTCATG------CCTACTGCACAGGAACTCTGGCTTTGC-------TGCACATGCTTTCTA----------CTGTGAAAAATTTTAAATTATTTCTGCCTTGAGTATGCATCCTTACATTTATATTTAATTT
s HiC_scaffold_1 145148221 708 + 233722169 AACAAAGCTAATCCTAATAAAAGGGATGGAGT------GAGAAT-CTGggttgagaaagaagaaaatattcttacTCTAGATTAATA-------CTTTTTTTAACTATGGGACGTGTTGAAGAAAGAAGATAATGAGGCCAAGTGATTTCCTAAATAGCATGATTGCATTAAATAAGAGAACCGAGATAGTCTCCAACTGCAAAGTTCATTTTGTTACCTATTTTACAGCACTCAGGAGCAATCTATTTGGGGCAATTTGAACAAAGGAAGTAAGGCTTT-TAGAGAAGAAAACCACAGCAAT-TCCAGTTACATAAATGCAACTGGTCTGTAAAACGCAA--TTTTTTAGAAC-TCATTAGCACATCAACTAGATTAAATAAGTCTATACAAAAACGGTTCACCTCGGTGACCTTCCCTCTAACAAAGCAGGTGGCGTCCTTCTGAAGAACGTCAGAAGCTTAATTCTTCTAAAAGACTAGGGGAGGCTGCAAAACAGGAATGTAGAACTGAA-TAAACCTGAACCCTGAAAT-TtcagagaaacacatttaaatttgtaAGTGTACCCCATCA-ATCTTATGTGTACATTTTAAACA---CTCCATGTGTGCTTCAACTGAGtaggaattt--gtttttcaaaaatacacacacattttctgCTTCACCTGTCTATGAGCAGTGCATAATTATTTTAGTCATGTATGCACatctttacatttatatttaattt

a score=10603
s chr3           157886446 815 + 160039680 CCAGGACACGAGACAATTTTATATGCAAAAAATTTTAGTGTGTATTTGTAAAAGACAC------CAGTTTTAAA-ACATAATTATGCCTGTAGCAGAAAGCAGGCCAGGGTCTTATCATTTGCCAC---------------GTCTTATTCAAGGAGCATAGTATTGAAGGACAGAAA--GCATTCAG----------CCCATCACAGCTCAAATGCCATATGATCACAATAAATGTTCCCTTAAGATGCCCCAATCCTTTAAAGTGTGCTTTAAAGGGTGGAACAGTTATTGCTGAACCCAGGCCCTAGGAGGCCTCAGCTAATAGAACCTTCTTCTTGAGTCCTTGCT------TCAGAACATTAGATGTCACAGGACAGG-GCTGGCTCTGATCCTTTGAGCCTGTATTTTTACCTTCCTTGCAGAGTAACAGAATGTAATACTGGC-TCTGACATGTT-----------------------GGTCATACCAGACCATGTAGA-----------------------------------------ATTCC-------------------------------------TTGGATA--------------------------------------------------------GAAACTGGCCTT--GCCTCACTCAATAATTAAAATGTTTCATTTACTGCAATCTA-TACTTTTATATAAAAA-CTAACAAGACTGGCAAATCATGGGCTCTAAAGCTATTTCTCCTTAGTGACAGCACTGCTATGTGAATGGATCCAAAA-TTTTATTTACTACAATGATTTTGGCCCAAG-TAATAGTCATTTCAAGTGTAGACACCCAGAACAAGAC-ATATATTTTATATCATTAAAGTAATTGGATGAGGATCGAAATTCTTGGAAAGATTCTACACTGCTTTAGTTTTACCTTAAATATACGT-----CAAACAGGCACTGAA-ATCAGTATCTTCACAGAATCAGTGATTATCTTCTGAAGTCACTGCCA
s HiC_scaffold_1 145189067 986 + 233722169 CCCAGATACTATGTTATTTTACCT-CTAAAAACTTTAGAAAGGACTTCTCAGAAATTCAAAATTCACTTTTAAAGACACAACTGTGTTTGTGGCAGACGACAGGCCAGG-TGCTATCTTGTGCTGATCCTTGTTGTGGTCAGTTTTATTtaacaa-cataatattgaaagGCATAAAAGGCATTGAAAGGCACAGACTCCAGCATGGGTTGAGTT-----TAATCTCACCAAGTA---CATCGAAGGATCCCTATCACTATAAATGCATTTCAGA-----------------CACATCCAAGTGCACTGTTGGCCTCCACAAACTTGACCTTCTT---GGGTATTTGCTGCTGATTCCAAAGTGTAAATTTCACAAGATAGATGCCAGTTCTCATCCTTAGACTCTGTATTCTTAATCTTCTTTAAGAATAACAAAATCTAATACCTTCATATGACATATTTTAGGAGTCAGGGAGAAGCTCTGGAGTACACCAGAGCATATAAATGATACAAATAGATGGCCAGACATTGTGtcctacacctgtaatcccagcattgaggaggctgaggcaggagaatcaccatgagttggagaccacctaggccacacagtgagacattgtctcaaaaaggggGAAAGTTATATAAAGAGGAACTGACCTTCTACCCCTCTCAATATTCA----GGCTTATTCACTATGATCCACTAATGCTATTCAAACTTCCGATGTAGCTGCCAAGCTTGGAGCTGTATGATTATTTCTCTTCAGTGACAACACTGCTGagtgaatgaatttggaagttttATTGACCTCCACAATTTTGGCCTAAGATCCTGTTCAAT--AAACACAGATGTACAAAGCTAAATTATGCAATTTAAATCATTAAAGTAATCGAATAAGGATCGAAATTTCTGGAGAGATTCCACATTGATTTCATTTCACCTAAAGCACATTTTAGAGCACACACATATTGAATGTAAATCTGTCTGCGGGA----TAGTTTTCTACAGAGGTCAATGCTA

a score=26427
s chr3           157888305 576 + 160039680 tctatgggaagctagggattgaacggagggattcggacattctaagcaagtcctccatcgactgaactTGTTTTTTAGTCCTCTATATCACAACACACATTTTTTTTTTTTGCAGCTTTTGTGATTTTTATTTAAACACAAA---ACATGCACACAAGTCATTTATTCATTTTCTTCGCTGCGTAGCCTGGCGTTGGGATTGGTGACTCTGATGGCCAGATGTGCTGCTCTTTCTATGATGGCTTTTCGGTTCTTAGAGGACACATTGTGTGCAATCTCAGCACAGTAAAATTTGTTGCACATCAGCAGCACCTCCAGCTCCTTGACATTGTGGACCAGGAA----CTTTCGGAAGTCGCTGGGCAGCAC-TGCTTGGTTTTCTTGTTGCTCCTCCCAAAAACGACGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCACACCCTGTTGTCAATGCCTCTGGGTTTCCGCCAGTTTCGCTTAATTTTCACATATCAGTCTGACTGGTGTCTGATGAACTTCTTGGTCCTCTTTTTGACAATCTTGGGCTTCACCAGAAGCCGGAGGGCAGCCATGATGCCG
s HiC_scaffold_1 123139302 561 + 233722169 tttgtgtggtcctggggatcaaacttacgacctcacacttgcca-gcaggcacttaggtcactgagctaaatacttggcccttt----------------tttttttctttgtagtttttgtggtttt-atttaaacataaataaacatgCACAAGAGATATCTACTTGTTTTGTTTGCTGCGTAGCTTGGGATTGGGTTTGGTGACTTGGGTGGCTACCTGATCTGCTCTTTCCATGATGGTCTTGTGGTTCTTGGAGGAGTCGTGGTGAGCAATCTCTGCACAGTAAGATTTTTTGCACATCAGCAGCAACTCCAGCACCTTAACATGGTGCACCAGGAACTTCCTTCCAGAAGCTGAT-GGCAGCAtgtgctttgtctttttattg---cttCCATACCCTATGTTGGGCATTAAGATCTGGCCCCTTAAGCTTTCTCAC-CCCTGTTGTCGATGTCTCTGGGTTTCTGCCAGTTGTACTTAGTTTTGACATATCGTTCTGACTGGTGCCAGATGAACTTCTTTGTCCTCTTTTTGATGATGTTGGGCTTCACAAGGGGTCTGAGGACTGCCATGGTGCTG

a score=15721
s chr3           157888404 497 + 160039680 TTTTTTTTTTTTGCAGCTTTTGTGATTTTTATTTAAACACAAA---ACATGCACACAAGTCATTTATTCATTTTCTTCGCTGCGTAGCCTGGCGTTGGGATTGGTGACTCTGATGGCCAGATGTGCTGCTCTTTCTATGATGGCTTTTCGGTTCTTAGAGGACACATTGTGTGCAATCTCAGCACAGTAAAATTTGTTGCACATCAGCAGCACCTCCAGCTCCTTGACATTGTGGACCAGGAACTTTCGGAAGTCGCTG-GGCAGCACTGCTTGGTTTTCTTGTTGCTCCTCCCAAAAACGACGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCACACCCTGTTGTCAATGCCTCTGGGTTTCCGCCAGTTTCGCTTAATTTTCACATATCAGTCTGACTGGTGTCTGATGAACTTCTTGGTCCTCTTTTTGACAATCTTGGGCTTCACCAGAAGCCGGAGGGCAGCCATGATGCCGCAAAACAGAT--GGCAGCCACC
s HiC_scaffold_1  38629967 457 + 233722169 tttttttttttggcagtctTTGTGATTGT-ATTGAAGCGCAAATAAACATGCACAGGAGCGGTCTATGAGTTTGCTCCGCGGTGCAGCCTGGCGTTAGGGTCCTGGTCTC-GGTGGCTT--TGGGCCGCTCTTCCCACGGTGGCATTGCGGTTCCTGGAGGAGACGTGGCCCGCAGTCTCCACGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCTGTGCACCGGGGACTC-CGGAAGCCCCTGCGGCCGCGCTG-----TCTCTCTGCTGCTTC---------CTGCGCTGGGCATCAAGTTGCGGGCCTGGAACCTTCTCCGCGCTCTGCTGTCCACGCCCCTGTTTTTCCACCCATCGTGCTGAATTTTGACACAAAGGTCTGATCGGTGCCTGATG------------------------ATCTCGGGGTTCACAAGAGAGCGAAGGGCCA-CGTGGTGC--CCAGTCAGATCCGGCTGCCACC

a score=15262
s chr3           157888404 464 + 160039680 TTTTTTTTTTTTGCAGCTTTTGTGATTTTTATTTAAACACAAA---ACATGCACACAAGTCATTTATTCATTTTCTTCGCTGCGTAGCCTGGCGTTGGGATTGGTGACTCTGATGGCCAGATGTGCTGCTCTTTCTATGATGGCTTTTCGGTTCTTAGAGGACACATTGTGTGCAATCTCAGCACAGTAAAATTTGTTGCACATCAGCAGCACCTCCAGCTCCTTGACATTGTGGACCAGGAACTTTCGGAAGTCGCTG-GGCAGCACTGCTTGGTTTTCTTGTTGCTCCTCCCAAAAACGACGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCACACCCTGTTGTCAATGCCTCTGGGTTTCCGCCAGTTTCGCTTAATTTTCACATATCAGTCTGACTGGTGTCTGATGAACTTCTTGGTCCTCTTTTTGACAATCTTGGGCTTCACCAGAAGCCGGAGGGC
s HiC_scaffold_1  37566894 425 + 233722169 tttttttttttggcagtctTTGTGATTTT-ATTGAAGCGCGAATAAACACACACAGGAGTGGTCTGCGCGTTTGCTCTGCGGTGCAGCCTGGTGTTAGGGTCGGGGCCTC-GGTGGCTC--CTGGCTTCTCTTCCCACGATGGCATTGCGGTTCCTGGAGGAGACGTGGCCCGCAGTCTCCACGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCCGTGCACCGGGGACTC-CGGAAGCCCCTGCGGCTGCGCTG-----TGTCTCTGCTGCTTC---------CTGCGCTGGGCATCAAGGTCCGGGCCTGGAACCTTCTCCGCGCTCTGCTGTCCACGCCCCTGGGTTTCCGCCCGTTGCGCTTAATTTTGACACCAAGATCTGATCGGTGCA----GAATT--------------------ATCTCGGGGTTCATAAGAGGTCGATGGAC

a score=9922
s chr3           157888406 284 + 160039680 TTTTTTTTTTGCAGCTTTTGTGA-TTTTTATTTAAACACAAAACATG--CACACAAGTCATTTATTCATTTTCTTCGCTGCGTAGCCTGGCGTTGGGATTGGTGACT-CTGATGGCCAGATGTGCTGCTCTTTCTATGATGGCTTTTCGGTTCTTAGAGGACACATTGTGTGCAATCTCAGCACAGTAAAATTTGTTGCACATCAGCAGCACCTCCAGCTCCTTGACATTGTGGACCAGGAACTTTCGGAAGTCGCTGGGCAGCAC-TGCTTGGTTTTCTTGTTGCTCC
s HiC_scaffold_1 110768213 289 + 233722169 TTTTACCTATAGAGTTTTggcaagtttttctttaaatataaaaaatattcacaTGAATAAtctactcattttcttttttcaccatTCTGGCGTGGAGACTGTTGGCCATTCATGGTCATCTTAGCTACATTTTCAACAATGTGTTGGCAATTCTTGGAGAAAGCACTGTGAGTGATATGAAGACAGTGAGGTTTATGGCACTTTAATAGCAATTCCAGCTTCTTGATGTTGTGGACCAAGAATTTCCAGAAACCACTGAGCAGcgtatattttgttttattgttgcttC

a score=15961
s chr3           157888407 493 + 160039680 TTTTTTTTTGCAGCTTTTGTGATTTTTATTTAAACACAAA---ACATGCACACAAGTCATTTATTCATTTTCTTCGCTGCGTAGCCTGGCGTTGGGATTGGTGACTCTGATGGCCAGATGTGCTGCTCTTTCTATGATGGCTTTTCGGTTCTTAGAGGACACATTGTGTGCAATCTCAGCACAGTAAAATTTGTTGCACATCAGCAGCACCTCCAGCTCCTTGACATTGTGGACCAGGAACTTTCGGAAGTCGCTG-GGCAGCACTGCTTGGTTTTCTTGTTGCTCCTCCCAAAAACGACGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCACACCCTGTTGTCAATGCCTCTGGGTTTCCGCCAGTTTCGCTTAATTTTCACATATCAGTCTGACTGGTGTCTGATGAACTTCTTGGTCCTCTTTTTGACAATCTTGGGCTTCACCAGAAGCCGGAGGGCAGCCATGATGCCGCAAAACAGATGGCAGCCAC
s HiC_scaffold_1  35748115 453 + 233722169 TCTTTTTTGGCAGTCTTTGTGATTTT-ATTGAAGCGCAAATAAACACGCACAGGAGCAGTCTACACGTTTGCTCCACGGTGCAGCCTGGCGTTAGGGTCGG-GGCCTTGATGGCCGTCCAGGCCGCTCTTCCCATGGTGGCATTGCGGTTCCTGGAGGACG--TGGCCCACAATCTCCGCGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCCATGCACGGGGGACTC-CGGAAGCCCCTGCGGCCGCGCTG-----TCTCTCTGCTGCTTC---------CTGCGCTGGGCATCAAGGTCCAGGCCTGGAACCTTCTCTGTGCTCTGCTGTCCACGCCCCTGGGTCTCCGCCCGTTGCTCTTAATTTTGACACAAAGGTCTGATGGGTGCTGGATG------------------------ATCTTGGGGTTCACAAGGGGTCTGAGGGCCA-CGTGGTGCCTAGTCAGAGACAGTTGCCAC

a score=15792
s chr3           157888430 491 + 160039680 TTTTATTTAAACACAAAACATGCACACAAGTCATTTATTCATTTTCTTCGCTGCGTAGCCTGGCGTTGGGATTGGTGACT-CTGATGGCCAGATGTGCTGCTCTTTCTATGATGGCTTTTCGGTTCTTAGAGGACACATTGTGTGCAATCTCAGCACAGTAAAATTTGTTGCACATCAGCAGCACCTCCAGCTCCTTGACATTGTGGACCAGGAACTTTCGGAAGTCGCTGGGCAGCACT-GCTTGGTTTTCTTGTTGCTCCTCCCAAAAACGACGTTGGGCATCAGGATCTGGCCCTTGAACCTTCTCCACACCCTGTTGTCAATGCCTCTGGGTTTCCGCCAGTTTCGCTTAATTTTCACATATCAGTCTGACTGGTGTCTGATGAACTTCTTGGTCCTCTTTTTGACAATCTTGGGCT-------TCACCAGAAGC--CGGAGGGCAGCCATGATGCCGCAAAACAGATGGCAGCCACCT-TGTAGGCAGTGCCGAGGAA
s HiC_scaffold_1 176697412 451 + 233722169 TCTTATTTAAACACAAAACATACACATGAATTATCTATTAGTTTTCTTCACTATGCAACCTGGC-TTGGGACTGGTGGTGACAAGTGGCTGATCAGACTGCTCTCTCTGAAATGGATTTGCAGTTATTAGAGAAAACA---TGAGC-ATTTCAGCACAGTAAGAT---------------------TCTTGCTCCTCTACACTATGAACGAGGAACTTCTAGAAGTCACTGGGCAGCAtgagttttgttttctcct---ccctCCCAAAACCAACATTGGGTGTCCAGATCCAGCCTGTCAATATTCTCCACACTTTGCAGTCAATACTTCT-----------------CCTTAATTTCGCCATACTGGTCTCACTGGTGCCAGATGAACTTCCTGA---TCTTTCTAAAAATC---AGCTCAGATGCTCACACAAAGCATCTGAGGGCAGCCATGACAAAGAGCAGGAGATGGCTGGCACCTCCATATGGTGCACCAAGGaa

a score=12322
s chr3           157897146 248 + 160039680 atcttaaataaaaGAAAAAAGAT-TACACACACACACACAACTTACCGCTGCCTTCAAAGCTCGATCCAGGTCTTCAAGAAGGTCCTGTTCATCCTCTAGGCCCACAGAAAGTCGTATCAGTGTGTCATTGATCCCGAGGGTAGCTCTGTCCTTCTCAGGCACAGAGGCATGGGTCATGATTGCTCTGGAAGAAAATGTGAGCAAATTTT-ACCATTGGATTGTGGCAGTGGAGGCATATTTCTAGCTCA
s HiC_scaffold_1 145204332 250 + 233722169 ATctgagacagagggagagggagagacagagggaaatgAAACTTACTGCCACCTTCAGAGCTTGGTCCAGATCTTCCAGGAGGTCTTTTTCATCCTCTAAGCCTACCGAGATTCGAATCAGCGTGTCGCTAATTCCAAGGATCTCTCTGTCCTTCCTAGGCACGGATGCATGGGTCATGATTGCCCTGGAAGAAGATGTGAGCAGATTTTGATTACTATCTTGTGCCAGAGAAGACAGATTTCACTCTCA

a score=8547
s chr3           157905126 269 + 160039680 AAACAGGAGAATACTTACGGAAGCTCAGCCAGACTCTCATATCCTCCCAGGCTCTCTGCCAGAGTAAACAGC--TAGCAAAGAAAACAGAAATTTAGAACAGCTG-----ATAATGGTGCTAAAATCTGAAAATGAATGCTTCTGATGAAA----------------GCATGAAGAGTGATAATAACTATGAATAAATCAAGAATCAGGCAAGATAATA----------------------AGAAAAAAGTCATATTACAGTTTAAGACAATGCTTTTGACAATTAGATGTACTGTCTTCAAATCTTTAAAACA
s HiC_scaffold_1 145208962 314 + 233722169 AAATAGAAACACACTTACGGAAGTTCCACAAGACTTTCATATCCTCCCAAGCTCTCGGCCAGAGTAAACAACTGTAACACAGAAAACGTACACTTAGACCTTCCGGCGAAATAAAACTCCTGAAACCTACGAGTGACTGTTTTTAGTGAAATGATCCTGGCACAGGGGGGTGGAGAGCAGCGGTCACTATGAATAAACTAAATATTGGGcaagaaaaaactaaatattgGGCAAGAAACCgaggaaaaaatgagaataaatttgGTAGCAAAGATTTCACCAACTAAACAAATtaagtttagaattttaaaaca

a score=11398
s chr3           157906156 419 + 160039680 GGGGGAAAATCCAATCCTGAGCT--CACCTTTAGATTTTTGAGGAAGGCCTTAGCATGCTGCAGAGCACCCTTGATGTAGAAACTGACCATCCCTGGGCAGCCCGAGCACTGGCGTTTGGCCAGCTCATGCTGAGGGTGAGAGGGTAGCCCTGCAACCACAGAACACGAGAGAAGTTTCATTCTAGAGCTACATATACAACTTCAAGGGAGCAAGGCCACTGACCCCTAAG-TCTGCCGAAAGTATCCCTAACAATGGGGTTGTGCAAGTCTTTCTCTCCTGTCAAGCATTTAAGACATCTCTTCTACTCCTCCCATGCCCCGACCATGTCTCTTCTCTTGACTCCATCAGCCTGTGCTCTCTCTA---TTCAGGATCTCTGCAGGT------------CCGAACTCCCTGGTTAATTGCACCCTTCTGCAATTCCT
s HiC_scaffold_1 145210034 363 + 233722169 GAGAGATGAGCCAAGACTGGGCTGGTACCTTCAGGTGCTTCAGGAAGGTCTCAGCATGCTGAAGAGAGCCCTTGATGAAGAAGGTGATCATCCCCGAGCAGCCCATGCACTGCCGCTTGGCCAGCTCATGCTGCGGGTGAGAGGGCAGCCCTGCAATCATGGA-----GGACAAGTCTTCTTTTAGAGCTA-GCACATAACTTCA---------------TATCCCCTCAGAGAAACAGGAAGTACGGCTGACAGTGAGGT----------------------------------------------------CCACATCCCAGCCACACCACCT-GCTTCACCCCAGCAGCATCTCACCACCTTGcgtctcaggacctttgcacatacCATCACCTCCCCTGACCCCCTTGTTACTTGCCTCCTTCTGTAATTCCT

a score=10787
s chr3           157907300 201 + 160039680 AGAACTCAGGTTGACATACCAGGATAAACAACCTTTTCTACCCGGGGATTGGTCTCCAGGAAACGAGCCACCGCCATCCCATTCTTGAAATGTTTCTCCATCCGGACCTGCAGTGTCTTCAGGCCTCGGCAGCAGAGGTAACAATCAAAAGGAGAAGGAACTGCTCCTAGTGCTAGAAAGCAAACAAAGCTTGGATTAGCT
s HiC_scaffold_1 145215994 201 + 233722169 agaaactggacCAACATACCAGGGTAGATAACCTTTTCTACTCGGGGGTTGGACTCCAGGAACCGGGCCACAGCcattgcattttggaaatgtttgtcCATGCGGATTTGCAGCGTCTTGAGGCCACGAATGCACAGGTAACAGTCGAAAGGAGACGGCACCGTCCCGAGACCTACGATGTGAACACATTTTGGGTTAGCT

a score=6763
s chr3           157908892 156 + 160039680 ACTTACAATTCTGCAGGAAACGAAGCCGACTATTGAGGTCATCAGAATTAACAGACACTAAACCCATGACAACATCGCTGTGGCCTAGAACAAAACACAAACA-CCACCATCAACAACAACTCATATTCATTTCTCATTTCACAATTTCCAAACtgt
s HiC_scaffold_1 145216653 156 + 233722169 ACTCACTATTTTGCAAGAAACGAAGTCGGTTGTGGAGGTCTTCAGAATTCACCGACACTAAGCCCATTAAGACATCACAGTGACCTACAGCAAAACAAACCCATTCACCAG-AAGAATAATTTATGTtacttcttctctttctcatttccaaaatgt

a score=10053
s chr3           157910728 801 + 160039680 attaaaATCAACACTTCTTGTTACTTTATCTTCAACTCAAGTGACAGATAAATCCTACACAGTAGCAGAAGAAATGGATCCAAAATGACAAGCTCGCCCTACATCACCTACCTATAGTGAAGAATATT---TAAGATATAGGCTATGCTTGTCTTACCATTCATGTATTTTGTGGCAGAACACATACAAATATCAGCACCCAGAGCCAAAGGTCTCTGAAAGAAAACAACAGACATTTTCACTTCAACTGAGAAACCATCTGAAAAGCACCATTCCACCCTCC---TGCATCTGTCATGGCATCTGTCATCTGCATCTGT------CATCCCAGATGAATCTGTCTCTGCTCTTCTGTGTGAGACTCCACAGAGCTTCGATTG------TCTAAGATCTTGAGT-CTGCCCCTACAGTTTCTTCTACCAAAGAAGCTACAAACAGAAAAAGGAAAACAAACAAACGAAAGACTGGACTC-----AGAATCTGAAGGCATAAGTTGCATGCAAACAAGAGGCAGGCCCAGTCTAAGCCTCCCTAAACCTTTCCTTTACAGTTGTTGACTGGCCCTGAGCTTATTGCCTGCAACAGAGATGTGTGTATTTTATGA---CTTGTTAAACACATGGAGCAGTTTATGAAAGCATCAGTCAATTTTTGTGCCAAGGGTGTACAACCTCTTTTGCTTAGACTTTTAATCATTAAAATCTGACAAGGTACAAGGTGTTTGTTCATACTTGGTTT------GTGGGACTCTTGACTCCTTGTCAAGAGTCTTTTTCATTATACTAGTTTTGACAAGTATAAAGTCAC----AAAGAAATCTGCTCA
s HiC_scaffold_1 145217042 723 + 233722169 atagaaatatatacaTCTT-TTACTTTGT-----ACATAAATCACAGAGAAGACCTGCATAATGGTAGAAGCAAAAGGATCAGAATGTCAACT----CCTATGCTAACTACCCAGCCCTAAAAAGATCACGCAGGAAGCAGGCTGGGCGCATCTTACCGTTCATGTACTTTGTTGCAGAATACATGCAAATGTCAGCTCCCAGAGACATAGGCCGCTGAAAG---ACAAAGAAGGCTTTTCTTTTACGTGGGAAACCA-CTGGAAAGTATGTTTCTGTCCCCCACTTACAACTGTCAATTCTTCCCCCAACCTCCTCTGTTGGGAACTTTGCAAAT--ATTTGTCTA-GCT------TGGAAGTTTTCAGAGATCCCTGATAGGACGCATCT----TCCTGGGTGATGCTC--------------ACcaaataaac------------------attaaaactgTGAACTACTGGCCCCCACATGGAACCTGAAAGCACAAGGTGAACAGAAATGACAGACAGACACA-CCCAGGCCTCC--------------TGGTGTTCCAAGCTGTCCCC--------------------AAAGGCCGGTACATCAAGACCCCTCGTTCCACCCGCAGGATGGTTC---AGCGCTTCAG-CAATCGGTACACCAG----GTACGAACTGCTCTGCTTAAGATTTTAATCTTTAAACCTTTACGAGGTGCTC-ATGATTTTTCACGCTCAGCCCATCACGATAGGAGCCCCCACC-----------GGCTCCTTTATTGCACAAGTTTTG-CAAGTGTAAAGTCACCTATATAGAAATTCGTTTA

a score=8926
s chr3           157913421 587 + 160039680 AACACAGTTTTGAGATAATAACTAATAGAAAAGAAAGTCCAAATCTGATTCTTTGTCTAATCAATAAGTTATATCTCATAGTT--TGATAATGATTATATTATAAAGT---------------------------------AGACTTCCCTTTTAAAATTATAGATTATGGTGTGGTTTATTAATCACAGCACAAACCGTTTAT-----------------TTCATTTACCTGGAAATATGCAGACATGAAGGTGTTATCTACAACCAAAATGATGTCTCCACGTTTGTGGACAATTTGTGCGCAGGCTCCAATGTCAGCCAACTTCAAAGTTGGGTTTGTGGGTGTTTCGATCCAAACAAGCTGCAGTAATTCAGCA---AACAACAGTATGTAAAAATATATGACATATACATACA----TCTCATG---TGCAACAATATAGAAGGCAACTACTTGCCAT----GTGGAAAGGCTTCGACAATAAAAGTGGAACACTTAAGTCCGAGTCTGAGCTTTCTCTA---CAAACTTCACACAGGCTATTGCTTCATAAACTCTCTTTCTCCAGTTCATCTGAATAAAAGTGTTGGTGATATTTATCTTACAGAACAATTGTTAGGCTCAAATAAGGTTATGTGTATCTaa-taagaaa
s HiC_scaffold_1 145220834 611 + 233722169 AACAAGGTTTCGACAT--TGACGAATAGTAGAAAAGGTCCAAATTTACTTCTCTGCTGAATTAGTAATTATGATTAGGTAATTAGTAAGTATGATTAAGTGATTAGGTTTCACAAGTCCGACAAGGATCTTCACCTTCGCTAGGTCTCCCTGTTCTAACCAT------------GGTCCCCTTGTCACA--CCAAACAGTAAATACATAAGTGAGTCTACCTCCACTTACCTGGAAATATGGCGACATGAAGGAGTTGTCCACCACCAGGATGACGTCCTTGTGCCTGTGGACGATGCGTGCACATGCCGTGATGTCAGCCATCTTCAAGTTGGGGTTGGTGGGAGTTTCGAGCCACACCAGCTG-GGTGGTTTAGGAGGGAAGAACAGCTGATGGAAGT-----GCACTTACAAGCACCAGCCTCATACCCTGCAGCCAGCAGGGAGGC-----TCTGACACCAGAGCAAAATTGCAGGGAGCAGGAGAGTGGAAGGTTTGCATCCCATCCCCACCTGGCCTCAGCTCGTAGCTCAC-----CCTCTGCCTC-------CCCTATGTCCA---CATCTGTATAATGGGTTTTCGGATAGCTATCTT----GGCAGTGGTTCGAATCCAATAAGATAATGGACATCAAAGTAAGAAA

a score=12297
s chr3           157918295 439 + 160039680 CAAACTCAATGTTTCCAACAGATTCA--ATAAAAT--GTTATTTGGATTTAAATTACATCCTCTAGTAAACAGAAAAGTGTGGGCTTAACACATCACAGGAAAAACAGATAAACTCAAAAGCCAAACTAGTTACCTTGGTTTGTGGTGTAATCGCTGCCTCTAGCAATTTGGTTTTGGAACAATCTACAAAAGAAATCTTCAGTCCAAATTCAGATGCCACCCTCCTGAAGTACCTGTTGGTGCCTGAGGCAGAAGACAGATAATATGCAAAGAACACAAG-GTCAGGAAGTATCTGCTCTTGGCAGACCTGCTCACTTCCA-----AAATGAAACAC---TCCAAAAAAAAAAGCAACTAAGAGCAACTTCAGTGTAGCTAAGCAACATGGTT-----------TGAGATACCACAG------CGTCAAATAAAATATACTTGATACATATAA---GTGACAAGAAGAAGA
s HiC_scaffold_1 145222774 457 + 233722169 CAGCCTCTGTATTTCCAA-GGGTTCATAATCAAATTTGTTTTTCAGGTTTCAATTCTAGCCTCTGGtgggaaaaaatg-atgaaaacaagacA-CACAGAGAAGACAGGCAACACTGAAAACCAGCTGAGTTACCTTGGTTTGTGGTGTGATTGCTTCCTCCAGCAATTCAGTTTTGGAACAGTCGACAAACGAAATCTTCAATCCAACTTCACCCGCCACCTGCCGCAAGTATCTGCTAGTACCTGAGGCAG----CACAGAAT---CAGACAAGATAAGCATCAAGAAATGTGCGTTCGTTACAGGTCTATGAACATGGAACGTTAAAAGAAACTCagttacaaataaaaattcaactgaaAGCAATTT-----TAGTTAAGTGGCGTGGCTATCTGTTCTAGTGAAGAATAACAAGGatccagtaaaataaaacaggctgGATTCCCACAACAGGAGACAGGATGCAGA

a score=7463
s chr3           157919942 210 + 160039680 TACCCATGAAATTCAAGACTTATTGCTATCTTCAAAGCACTATCTGGCAC-ACCTGGAAATGAGAGATCACTTACCTCCATACACTTCATCCATGCAAATGATTTCATCTCCTGCTTTTAAAAGATGGGTAATCGTAATGGTGGCAGCAAGACCCGATGCAAAGGCCAAACCTACCATGAACAGCAAATTCAAGTAAGCTAAGAACCCAAA
s HiC_scaffold_1 145224425 210 + 233722169 TGCTAATGTAATTCAGAGCTTGCTTC-ATTGCCTAATTATTATTTGATGCCACATGGATTGGTAAGGTTACCTACCTCCATACACATCGTCCATACAAACCACATGGTCTCCTGCTTTTAACAGGTGGAAAATTGTCACAGAGGCTGCTAGGCCCGAAGCAAAGGCCAAgcctaaaataaaaattgagttgGAGTTAACCAAAAAGACAGA

a score=7090
s chr3           157920917 228 + 160039680 GAGAATCTGGCTTTCATTCCGGATGTAAATCTCTTACTGTGCTTTGCCCCATCCAACGCAGCCACTGCTTTTTCCAAGCAATTCCTTGTTGGATTTCCAGAGCGGCTGTATTCAAAACCCTGAAAATAAGAAAGGGCAAAGGAGGAAGAGAAGGAACAGGGTTTATTATCAGAG----------------------CCCATGAAGACATGGCCACAGCTACAGGCCCATCCCACCATAACTGCTTTCTAT
s HiC_scaffold_1 145226241 222 + 233722169 GAGTCTCTGGCATG---TTCACATCCACATCACTTACAGTACTTAGCTTCATCCAGCACCGCTACTAATTTTTCCAAGCAGTTCCTAGTGGGATTTCCAGAGCGACTATACACAAAAccctga-------------------------agaaaaagaagagttcaTTTTAAGAGCTTCACATTTATGACGAGCATCCTCACAGAGACATTTGAGCAGCTATGAGTTCATCCTACTGTAACAACTTTCTGT

a score=11582
s chr3           157922507 898 + 160039680 TGCAGACATTTAACTTCCAGGGAAGGAGAGCGTCTTTCATTGGCAAATTATCTTGTGCATTCCATGGCTTTTCAAATGGAACTAAAGATCTCTGATACTTCTC---------------TTAGCTGCAGTGCTATTAGC------TTTTGGAGATTCTGAGCACATACTG-------GATTTAACCACTCCTGCTTGCTCTCTGAACCGTTTTAACATTAAAATCATACCTGACTGCTCAATTTCTATAC-----------ACTTTTTT--CCACACAGGCAGCAAGCCTATCTAGGAGG-----GGCACACTTGGAGGAGGTGATGAGCGTATTTTGAATGCACATCATCAGGAGTATCCTAGCCTGATATAGAGACACTTTTGGGACTCCACCTCACATACAAAAAAGGGTT---GTTTGTAAGAAC-----TTTACCT-----------------------GGCTTAGAACACAGAAAGGCAGTATTCAGAGCAGTCAAGACCTGGGAATGTGCAACAACTGCTTTGATAACAGCTGTCCTCTGAACCTGGGGCATTTTTAATATACCAAGACCCATTTAGTAAGCC----ACCAGAAAGGAAG--ATGCCATGAGATTCACAAGGCTGCATCTTACAGGCTTTACCAGTCACTTGGTCATTTGTGTTTGTTGAGTCTGGGTCAGTTTCCGTTTTTATAAAAGGAT-TTAAC-----CCCTGCCCTATGACTTAGCTGCTGT---GGTCAAATGGAAATAACAAGGCAGGAAGACTGCAAACACCAAAGTACTCCTAAGTGTGTACTACAAAATTTAGAAATGTTACAacagtaacagcttgtg-tagtgtgttctatcattatcccagtttacacaaggtcatctcaagtcttggatgggttaaatagcttcctccaggttactcagtcagagaagctgatgtaagaattaaaacccatgtgctcttaatcaca--------aagccacactACTT
s HiC_scaffold_1 145227077 897 + 233722169 TGTAGATATTTATTTACCTTGGGGTCAGGGCACACTTCAGTAGCAAATTGCCTCATCTATGCAATGGCTTTTCAAGTGGAACTAAAGA---ATGATGTTTCTTGGGCAGCCCTTCAAATTCCCCATAGTGCCCTTAACTGATTTTTCTAGAGA-----AGTAAACAGCGGCTTGTAGAGTTAACCATCCCTGCTTATTCT-GAAAACGTTATGTTACTACTATCGTATCAGAATGATTAACTTTTGTGCTAAATGCCAAAGCTTGCACAGCCACACATTCAGTAA-CCTGCACACCAGACACACTGTACACTTGGAAGAGG-----------CTTTGTatgcatattttca------------------------------tttcaacTTCACCTCCCA---AAACAAAGGTCACAGTCTATGAGCACAAAGGTGTACTTAACACCTTTCAAAGGTTAATCAAGGCTCAAGACTTTCAAAG--ATTAATCAAGGC--TCAAGATTTATAAA------------GTTCAGTGAACCAATTTATTCCAAATCTCAGCAACTTTAAATACTCCAAGACCCATCTGGTTTGCctgcaacaagaacaaaagctaTGCAATGAA---CACATAGTGCTCTCTTACAGGGTTTACAAGTGATGTA---------------TGAGTCCAGGTCag-ttctttgtctataaaagacTCCTAATACCTGCCCTGCCCTCTGAACTGACTCTTACGAAGATCACATGGAAATAGTA-------TAAATGTGAAATGCCAGTGCATCACTGAGTGTTTATCATGTACACTGTAGCTTTACAAATACCAACAACCTATGCTGGTAGG---TATTACTATTCTCATTTACACAGGAGCAGCCTAGGGCTTGGAAAGGTTAGACAGTTTCAT-CAGGGTAGACACTCAGAAAAGGTGAAGTCATGATTCAGAGCTATGT--CCTTTATGACAGGCTGGAGAAGCCACACTGCTT

a score=8675
s chr3           157924842 192 + 160039680 CCCAGCCCTGCCCGGCT---------GCTTACCGAGGACTGGCCCGGGAAGTCCTGCTTAAATGTGGTGGCCAACGAAATGGGCAGCACCACGGCACGAGAATTCCATTGCTCAGGCTCTTGTCCCACGTGGATGGCCTGAGTGGCGAAATGCTGGAAACTAGGCAGGAAGCCGCTCA----AAGAGGCGTCCTTCTGCATGCTG
s HiC_scaffold_1 145228541 204 + 233722169 CCCCGCCCCGCCGGGCCCCCGGCCAGGCTCACCGAGTGCTGGCCTGGCGCGTCCTGCTTGAAGGTGGTGGCCAGGGAGATGGGAGGCACCACGGCCCGAGAGTTCCACTGATCGGGATCCTGGGCCGTGTGGATCGCCTGCGTAGCGAAATGAGGGGCGCGAGGTTGGAA-CCCCTCAGGGGAGGAGTCTTTTTTCTGCATAATg

a score=35825
s chr3           157947227 741 + 160039680 GAAGCTCTCGCGAGAGGAGCCGGGGAAAGATGGCTGCGCCGGGTCTTTCCGAGTGAGGAGGAggcggcggcggcggcgccgg--------gcgTCG--TGCGG-------------------------------TCGTGGTCTCTTGAGCTGCGGCTTTCCTCGTCCGAGA------------------CGAGGGCCGCCGCCTC---------CGGGAGATGCGCGTGTCGCGGACCCG-CGGTCGCCCCGGGAGTTCATGCTGCGTGCTAGGCTCGCGGCCGCCGCTCTAATcgcccggcgccgccgccgcgccggctcgg---cccgcggTGAGCCTCCCGGAGCC------TGTCCCGCGCGCCG-CGGCGGCTATGACCGGGGAGAAGATCCGCTCCCTGCGGAGGGACCACAAGCCCAGCAAAGAGGACGGGGACGTGCTGGAGCCCTGCGAGGAGGAGGCGACAGCCGCGCTCGGCGGCGCCTTCACCGGGGGCAGAAGCGGACCGGGCGGCAGCGGCAAGGGCGGCAAGGCCTGCCATAAGATCTTCAG---CCACCACCACCGGCTGCAGCTGAAGGCGCCCGCCG----TTCCGGG--CCCCGGCGTTCCGGCCCCGCCGCAGCACAACGCAGTGACTGCCACCTGCCCTGCCCCGGCCTGCCTGGGCGGCAGCAACCC---CGCTTTAGTCGCTGACGGAGGCGGCTGCCCCTCGCTCTACCCGGTCCACGAGTGCGTCTTTAAGGGGGACGTGAGGAGACTGTCCTCGCTCATCCGCACGCACAATATCGGACAGAAAGATAATCATGGTGAGCTTTGCC
s HiC_scaffold_1 145274145 822 + 233722169 GGAGATATCGCCAGAAGAGCCGAGGCAAGATGGCCGTGCCCTGGTTTTCGGTGTGAGACGGTGGCAGCAGCTGCGGTGCTAAAGGGAACAGCGGCGGCTGCGGAGACAGCGGAGGCGGGGACTGTAGTCTGTTATCGTGGGCGCCGGAGCTCCA--TCTCCTCCTGCGAGCGCACGACTCCCGGAGCCTCGGCGGGCGCCACCTCTCCGTGCCGCGCGAGATGCGTGTGTCGCGGGGCTGGCGGGCGCTCCGGGAGTACATGCTGCGCCGGACGCTGCTGGCCGCCGCTCTAATCGCTTCCCGCCGC-GCAGCGCCGGCCCCGTCGCCCGCGGCGAGC-TCCCGGGTCCCCTCCCTGCCCCCGGCGGCGTCGGCGGCGATGACCGGGGAGAAGATTCGCTCGCTGCGCAGGGACCACAAGCCCAGCAAAGAGGAGGGGGATCTGCTGGAGCCCGGCGACGAGGAGGCGGCGGCGGCCCTCGGCGGCGCCTTCACCGGGGGC-----CGGGTC-GGCGCCGGCGGCAAGGGCGGCAAAGCCTATCGTCGTATCTTCAGCAACCACCACCACCGGCTGCAGGTGAAGGCGGCCCCGGCCTCCTCCGGAGCCCCCGGCGCCCCGGCCCTGCCGCTGCACAACGCGGTGCCTGCCACCCCTCAGCCCCCGGTCCTTCTCGCCGGCACCAACCCTGTCGCTGTGGTCGCCGACAGAGGCAGTGGCCCCGCACACTACCCGGTGCACGAGTGCGTCTTCAAGGGAGATGTGCGGAGACTCTCCTCCCTTATCCGCACGCATAACATCGGGCAGAAAGACAATCACGGTGAGCAGTGCC

a score=9496
s chr3           157960904 160 + 160039680 CTGAAGGAGCTGAAACCACATTTAAATATAATTTCTTATGTTGTTATGGCTTCTAATTTAATTTT-GTTTTCAATTTTAGGAAACACTCCTTTACATCTTGCTGTGATGTTAGGAAATAAAGGTTAGTA-AATACTTTTAATGTTTAACTTCATTCATAGTT
s HiC_scaffold_1 145296842 162 + 233722169 CTGAGGAAACCAAAACCACTGTGACATGAACATTTTTATGTTGTTACaacttctaatttaatttttgtttttaattttaggaaacaCTCCTTTACATCTTGCTGTGATGTTAGGAAATAAAggttagtattttattttttctgtttaacttcatGCCTGTTT

a score=13694
s chr3           157961947 441 + 160039680 tGAACTGTAGACATTTG--TATAAATTATTCTTAAGGTTCATAGGTTATCTTTAGTTCATGTAAAACACTTGAAATATTCTTTAGAGACGG---GAAGCA--ATACTTTTTTTTCAGAGAGTATCCAATTTACTTTTAGATAGGT--TGAGTTCTTTTGACTCTGGGAGTTTA--TAAGTTAGTTATACATAGAACATATACATGGGA-GTTTATAAGTTAGTTATACATAGAACAGCATTATTTCACATATGTAGTATAATCTGGTTT-------CTTTTGCATAATACTCATATTTAAAGGTTCTAGAAATTGTATGT-CTGATCATTATTCCTATTTTATGTTACAGAATGCGCACATTTACTGTTGGCTCATAATGCTCCAGTAAAGGTGAAAAATGCTCAGGGATGGAGCCCTCTTGCGGAAGCCATCAGCTATGGAGACAGACAGATGAGTAAGT
s HiC_scaffold_1 145307772 426 + 233722169 TGGATTATAGATATTTGAGTGCAAATTACTATTGAGGTTTGTATATT---------------------CTTAGAATGGTCTT-GGAGACTGTTGGTAGCATAATGCATTTTTTGCAGAGAG-ATCCGTTTTATTTTTAGGTAGAGAATGGGTGCTTCTAAATCTGGAATCTGAAATAACCTAACTCGACA----------ACATGGGAAGTAGAATATCTAATTATA--TAGTACATTGTTTACAAATACGTGCATTATTAACTCACCTTGCTAAACTCCTGCATGGTGCTTTTCTCCGGAGACTCTGGAAGCTGTGTGTGCTATTGATGCCCCCTGCTTTGTGTTACAGAATGTGCCCACTTACTCCTGGCTCACAATGCTCCGGTCAAGGTGAAAAACGCTCAGGGATGGAGTCCGCTGGCAGAAGCCATCAGCTATGGAGACAGACAGATGAGTAAGT

a score=7817
s chr3           157972219 105 + 160039680 TTTAAATTCTAGTCACAGCTCTTCTAAGGAAACTCAAGCAGCAATCTAGGGAGAGTGTTGGAGAAAAACGACCTAGGTTGTTAAAAGCCCTAAAAGAGGTAAGTT
s HiC_scaffold_1 145315227 105 + 233722169 tttaaactttagtTACAGCTCTTTTAAGGAAGCTTAAGCAGCAATCCAGGGAAAGTGTTGAAGAAAAACGACCTCGATTATTGAAAGCCCTGAAAGAGGTAGgct

a score=7849
s chr3           157972968 1564 + 160039680 ATTTAGTAATTTTTCTTATTTTATTTCTCAGTTAGGTGACTTTTACCTAGAACTTCACTGGGATTTTCAAAGCTGGGGTAAGAGTGTGCTACGTTTTATT--------------------ATAAAAGTGCAA-------TTATAG--ACATTAGCATGACACATTTTATACTT-GTCTTCATTGTGTTTAGCATAATCATTGTAACAACCACTAGTTATACCTATTAGTAATATTCCATTCCCAGCTAGAGAGGCAGTTCTCAAAATTTTAGTTTTTAAGATGGAAAACTACCTAAAAATATTTTTTGTAACAAAAACAAGCTTGAAA--ACTATAGTAATTTAGTCTCACATCTTTACCACAGGGGCTGAGGCAGAATTGTAGCTACAGGTTCAAAGCCATGCTAAGTTTGGCCATGTACTACAGCGTGAGACCTTTagggccc--aggttcagttc--ccagcaccca--catcaggcagctcacaaactgcctgtaactccagttcaggggattgaatgccctcttctggtctctgtagatatagcgtgcatgctctcaggcttacatgaacatacacataaaacaaaaaAGTAAAATAAAGGTTTAAAAATATT-----GTAATTTAACAATAAGAACTTCCAAAAAATGAAAAATTATGGGATTATTAATCATTTTAAGAAAGTTTGAAGTATAGTTCTATAATT---TCTAAGAATTTGCTTAAAATTCTTTTTATTTTG----------TCATCTTTCAGTTATTTTTACCTCTTAAGTACTTCATGGCCACTGTCAAGATAGAACTTGATATTTATAAAAGGTTTTGATTGTGCATCCATTTATTAATTTACCATAGCAATGGACGTGGCT--CTTCTTTTATCAAACATGAATCTGCTCAGAGAAAAG--TTAATGTCCAAAAACAAAATTTCATGAAAATGCCCCATACTTTTTTTTTAAAGCTAGTTGAAAAACtaaatttta-ttttattatatatttatttatttatttggttttttcaagacaagacatctctgtcctgaaacttgctctgtagaccaggctggctttgaactcgcagagatc---catctgcctcttgagtgctgggattaaaatcatgtaccaccatgcccagtttaattttatttttattaaaaatGTAAT------AACTTTGTATTCAATATACATA------TTTTTATCAGCATTTGAATTAACTTTTGTGTTATAAAGTAGTTTAAATGATTAGTGGTATTTATCTTTAAAATAGGCATTGAAACCAAATTTTGACAAA-AATGTGAAGTATATTTCATTTTATATAATTGAATATTATTTGGAAGTTACA-------CATATTACATATATATCTTCTAATTATTTTATATGCTACAATGATA-TTCTCTCTATATATGT------ATAGTACATTTTGTTATATACTGTCTACTAATAGGTCTTTCTAGATCTTAATACAAACTAGTAGTAGTTTATATTTTACAGCTTGAAAAATAATAGACATTTTCAAGTTTGGAGCCCATAGAAGATTGATAAATACAGCTTAGTTTGGAGCAG--TGCATTGGCACTGATACCCTTTAATAC------AAGTTACA---CTTTCAGAATGCA-TTAGGTGTGCACACT
s HiC_scaffold_1 145316225 1378 + 233722169 ATTTAGTAATTACTCACATTTCATTTTT-AGCTAGGTGATTTTTATCTAGAACTTCACTGGGATTTTCAAAGCTGGGGTAAGTGTGTgctgttttcctttaaatatatattcatgcaGAGATACAAGTGCCAAAAGCTTTTATAGATACATTAGCACAACAGACTTGATCCTTCCTCTAAGCAACTTTTATCCTCA--AGTTTAAGAACTAT--ATTAaacctttttaaaacatta-----------aaatagg-----cTTAAAATTACAGT------------AACTTAATGTGaagtatttttagaaaagaagaaaatcttgggATTACTGAAGTGTTTAAGTGTAGTACTT----------GGCT---------------CTCCAGGT--------GTGC--AGTTTG-----------------------TTTAGTGCTCTTTGGTTCTGTTTGGTCATCTTTCAGTCACCTTGCTACATACATACT--TTATGACC----------------AGTGCCTTTACATGCTGTTTGGCTGTATAGTGCTCCTGTTATT-------TATG----------------AAAGATGTGAATTTTGAGCT---AGATATTTCACAGTCATTTAATGAT--TTACTATAGCAAAGTGAGCCCCCCTCCAATGTTTAAAAATGGTATGGGAGCTTGAACCA----CCCCCAACCCAACCCCagccactgct-----tttttttttttttgaaacagggtctcaccagtTGCCTAGGTTGACCTCAAGCTTgctgtcttgcctcagcctcccaaggaacTGAGA-TTACA---------GCTTGTGCACAAACC-----------------------CCTGGCTTCTTCCCTTTGCGAAACATGAATCAGCTAGGGAGAAAGCCTGCATGTTCAAACAGGAAGTTTAATATTAGTG------ACCTTTATTTTAG---TAACTAGAcaatcaaattttgtttttgttaaagat----------------ttttttaaaggagag---------------------------ggacca----ggaattgaactc---aggacctggcattcgtcaggtaggcgcttatgcctgagccatgt--ccccagcccttcattaa--agattttt-----aaatctaaTCCACAAAGATTTGGATGTAGTAAACTTAAGTGCGTTTTTTAAAGCATTTGAATTGTGACACATAATACAAAGTTATTTGAATGCTCAGTGATGT---CCCCCCAAGTAATCACGGAAATTAGATACTGAGAAATAACCTGAAGTA-ATTACATTTTACATAACT--------TTGGAGAGCTATAATGTATTTATATTCTATATATGTT-----ATAATTGTGTATGTAATGTTTATAGTTCATTATGTAAATTTAACATAAcaatatattgtattattttttatatattcatctgTT--------------TACAAG--GGTTCTGCTTCCTATCACATAA---GGAAAGCAATGGACATTTC--AGTTTTATCCCTGTGGAAGGTCAATAAATATAACTTTACTTGAAATGGATCATATTG----TGATATTCATTAATCCTGAATGCAGTTATAATGCTCTCAAAATGCACTTGGGTTTGAAAACT

a score=12153
s chr3           157988629 279 + 160039680 TCTTTTACAGGCTTGACACAACTCTCATAGACTTTACTGACATGAAGTGCCAACGAGGGGATCTAAGCTTCATCTTCAATGGGGATGCTGCACCCTCTGAGTCTTTTGTAGTGTTAGACAATGAACAAAAAGTTTATCAGCGAATACACCATGAGGTGAGCATATCTTATTAATATTTCCCTAA-AGGGTTGAAAATGTGTATGTATTTACTAAAGCCTCTGTATAAGGGCTTCATTTAAAGCATAAAGTATAGTTAATGTGGTTGATTTGAAAAGCTTT
s HiC_scaffold_1 145323313 265 + 233722169 TCTTTCCCAGGCTCAACACGACGCTCATCGACTTCACCGACATGAAGTGCCAACGCGGGGACCTGAGCTTCATTTTCAATGGGGACGCAGCCCCCTCGGAATCCTTTGTAGTATTAGACAACGAGCAGAAGGTCTATCAGCGGATACACCACGAGGTGAGCCCG----------GTCTCTCTGGCAGGGTCAGGAAAGCG--TGCGTTCAGCCAGGCTGCTGC---AGAGCTGCTTTAAAAGTGCCAGGTGCAGCTGAGATGGATTCTTTGCAGAGTTTT

a score=51904
s chr3           157991243 3549 + 160039680 [encoded data, 4186 characters]
s HiC_scaffold_1 145325824 3787 + 233722169 [encoded data, 4186 characters]

a score=12786
s chr3           157999560 1298 + 160039680 CTCTTTCCTGCCTCAGTGTGTTTTAACATTAATTTTAAAA---TGTGATATTCTTCACTAGTATTCTACACTCTCCTTGTCTCTTTCTCTTATTGGCAGCCGGTTAGAAGACAGTCCCTTACCCCTCCTCCTCAGAACACTATTACGTGGGAAGAATACATATCCGCTGAAAATGGAAAGTAGGtgttttgttttgctttgttttatttttatttttttggtttatgttttctttGAATTTTTAGGAAGAAAAAAATTGTTAAAACAGT------GTTTTTTGGTACAAGAGTTC---TGAGAGAGTATTATTGGTGTATTTTTATCTGAAACTATTGTTCTAACTTTAAGAAATATAAAGTAAGCATGACAAAGAAACCTAACAAATTATGTGTGCACTGTGAGTTTA---GAGCCTTCTTTTTACATCTTTTTTGCCAATCACACACACACACACACCAGGCAATAAGCAAGAAGCCTGCAGGACTTGTCTGTCA-----GACTTGGTGTTCATACCTATGTTGA-----TGC-TTTAAGCATTTCCTGTT------------------AGGCCATTCCAGA-TTGTTTCCTCTCTGCCTTCTCAAGCTGGGTCCTGTCATTCATTTCATTGAATTCCATA---AACCTTTACTTACTGCTGTGCCACTAACTCTTGAAGA-GGAGTTAG--GCACACCATTACCGTTCCTTATGC-----ATATATTGAGTTGACAA--------GAGGTGAATGAATAAAGG--TTATTTTG-AATGATATGTTTATCTTGGCTCACCAGTGTTTCTCTTTGGTGGAGAACAAAATACCTCCCCTTGTATCTACCCCACTGTGCTAAAGAAGAAGCGGCCTTGATTTTATTT---------GATTGATTTCTTATTGAAAGGCATGCTATGATTGTCCATTTGCATGTTCTGTTCTAGT-----------GTTGGGGTATTTGACCTTGTCTTTTTGTGAGTGACTATTTGACTAGCCTTCATTAGACTTCCCAGCAGGTCAGAGGAAACTATCATATAGTTACTTGTGGCATGTGCCAGATAATTCAACAGAACTTTGAAATCAGGCAGGAAATCCCAGATACAACACAGTGGAATAAGGCAGGTCCCCTCTATGTTAATTCTGCAAGGGAAATGATTTTGAAATAAT-------------TTCTGC-GTCTTTCAA---CTCAACTTTGTCTGCTCAGCTTA------------TTCTGTTT--------------TTGCTTCATTGTAGTCACATAACCA--AAAAAGAAACATTA-----------TAAATTTGTTATAA-------TTTTAACAGTGCATATGTACAGAATT-TTTAATCACAGTGCTTTTTATTGTTGAATGTTGAAACTGTAGTAGACGGTGAAAGAGATTGAATTAAATGATTTTTA
s HiC_scaffold_1 145330966 1291 + 233722169 CCCTTTCAGCTCACTGTctgctttaattttgcatttaaaaactcATGACACCTTTCTTT----CTCCCCTCTGTCCTGCTCTCATTTTTT-----GCAGCCAGTTCGTAGACAGTCCCTGACCCCTCCTCCACAGAACACCATCACGTGGGAAGAGTACATATCAGCCGAGAATGGAAAGTAGGTGGc---ttctgctc-------ctcttcctcttttcgtTTATgttgtctttgatttttaa--aaggaatagtGCGTTAAAACAATCTATAAATATTTGGGCATGATagcccattttagagatgagtatTGACCTGTTTTT-TCTGAAGCATTGTTTTTACCCTTTAAAGATATGAATTAGGTGTG----AGGAATGTTCCACCTTTTGGACACCTGGACAGGGCACCTGAGCCTTCTCTCTCCATC----------GCCCTGCTGACTTACACTCCAGGAAGGCAGTGGGCCTCCTTCCAAGTGAAtctgctattgcttatttgagaTGCTCAGCTGTGTGGGGAACTTGCATTTGATGATTTCCTGTTAACATAGCGGAGCTTTTAAGGCCACTCAGTAGTTGTCTCACCT----CTTTCCATGCTTTGTCCCACTGTCCCTTTTATTTCAGCCCCTGCCTCACTCCTTCCCACTGCTGTGCACCAGACCCTCGATTCTTGTGTTAGCAGCACAGCCAAGCCCGTGTTTGTGCCCAGTACATATTCTGTCAACTAAGAGAACCAAGGTGCAGAAAAAAAGGGTTCATTTGGTACTAGTGAGTTGAT--------AAAAGTGTTCCT-TTTAGTAGAGAATAAAA--------ACAGGGCCCACCC--CCATGCTTAGGAGGAAGCTGTcatcattttgtcttttcctgGGGGCAGTTTTCTTgt-----------ccctgcctcccctcccccatgtCTCTGTCTGATAGTCTGCGGCAGTGGGTGTATTTGACTGAAGCCGCTTGT---------TCTG------CGCTGTTAGGGCTTTCTGCGGGCTGGAGA-------------------------CCGTGCCAG----------------------CCATGTGG--------------------GTGCCCTAAGGAGGA--CCCTCCAT-CCAACCCTGTGAGGAAAGGGATGCTGAAATGACCAGCCGGGTattattctgctttcttttgaCCTCTCAGTCCCCACTCCTCAGGGTATTGAAACACCAGTTCTGTTTTATAGCATGGGGTGTTGTTTTATCCTAAATCTGAAGCCAGCAATAAAAATGGTTAGAGCTGTAAACTAAATGTGTCACAATTTTGTCTTTTGATAATGTGTA-ATACAGGATTCTTTATTCTTCATGGTATTTATTGATGAATGTCGAGATTG--GTAGACAATAGAGGAGGTAGAACTGAGTGATGTTTA

a score=9865
s chr3           158000839 345 + 160039680 TTGAATTAAATGATTTTTATTTT---GTTCCTAAAATGGTGTTTA---------AGTTA---TATTCAGTATGAAATT--------CCTTGACTATTCGTGTTATTTTCTGAACTTTCAAACTG------TTTCTTTCGTCCCATTTCTTATAGACATCTTGTA-----TTTAGCATAATAATATTATTTCTGTAGATAAGTAGAAGTATTAATGAGC-ATTGATGAGTTCTTAACAAGGCCTCCTTAACAGTGTTCTTTCTGTTAT-----------AGGGCACCACACCTGGGCAGAGAACTGGTGTGCAAAGAGAGCAAGAAAACATTTAAAGCCACTGTAGCCATGAGCCAGGAATTTCCCCTGGGAATTGAGTCGTAAGTGTGCTG
s HiC_scaffold_1 145332991 378 + 233722169 TTAAagtctatgatttttttgttttaattcctaAAA--GTGATTAGTAGAATTCATCTACATTATTCAATGTAGAATGGGCTGTGGTGTGGTctgatcttttttgtttctgttcttttagtctgctctttttcttttcattatttttcttacacATATCCTGTTCTCTTTTTAGAGTAATTGTATTTTTGTAGAAGATGAG----------AGTGAACTGTCGATGTCCTGTGAGGCAGGTTtcct-aacattttgtttttctttgtttttatacatTAGAGCTCCTCATCTGGGTAGAGAACTGGTATGCAAAGAGAGTAAGAAAACATTCAAAGCCACCATCGCCATGAGCCAGGAATTCCCCTTAGGAATCGATTCGTAAGTGTGCCG

a score=10564
s chr3           158003603 253 + 160039680 TCCTCCTCAGTGCTTGGGAAGTTAGT-CTG-TGAGGTTTGAGCCACGTAGTTCAAGAAATCATTACAGACATGAACCA-TGGAAACATTC-------TCTTCTTTTATTTTTCAGATTGTTGAATGTTCTAGAAGTAATAGCACCCTTCAAGCACTTTAACAAGCTTAGAGAATTCGTTCAAATGAAGCTTCCTCCAGGCTTTCCTGTAAAATTAGGTAAGACAAAAAAGTCAGATGGAATTTAATATGGTGTATATTTTAAA
s HiC_scaffold_1 145336175 249 + 233722169 TCATCCTTAAATCTTG--AAGTCAGTACTGCTAAAGTTTGAGGTCCTAAGTGTAAGAA-------CACACATAAATCAGTGTGAACAATaacacatattttcttctgtgtttcagatTGCTGAATGTGTTGGAAGTAATAGCTCCCTTCAAGCACTTTAACAAGCTTAGAGAATTTGTTCAGATGAAACTTCCTCCAGGTTTTCCTGTGAAATTAGGTAAGA-AGGACATTCAGGTGTACTTT----TTGTGTCtgttagaaa

a score=47109
s chr3           158005732 2351 + 160039680 TCTCCAGATATACCCGTGTTTCCCACAATCACAGCCACTGTGACTTTTCAGGAGTTCCGATGTGATGAATTTGATGGATCCATCTTTGCTATCCCTGAAGACTACAAGGAAGACCCAAGTCGTTTTCCTGACCTTTAACTG----------------------ATCCAGA--------AGAGCATGAGGC---TCCAGGTGGCAAAGGCAGAGCTTTTCT------------------AAGCAGAGTGTCAACACATCAGTGATGTGATGAAAAA--CTGACCTCTAATAAAACATCCACAGCTTCCTGATGTGCCATTCATTCATCTTTTTAAAGTCACTTCCTGTCTGTAATAGTTTGACACC-CAGTGACCCTGAGACCTTCCTATGTAAAGCAGCTGTGAGTGCTGTGATTTGTTTTTAAAGATTTTTACACTTCTTGTTGAAATATATAT-CAAATAAATATATCTATAGCTATATCTAA---AACACTCCTGGACCATTAACGTAAATTCTGTGTCTTAAGAGATATGAAACCCTTTGAAATGCGTCACCTC-TATTCAGGGTGGCATGTATAAATGTTCCTTTAAGCTTTGTTTTCAT-----------------CATTATGTATAGTTCTGTAATTTGAAT---------GTTTAACCAACTAGAAGGAATGCAGTTTTCTGAGGTGAACAGAGCAATGGTAACCATCAGTTTCATTTACAGCCTGTTGCAATACATTCCGAGGGAACGCTCCCTGCAGGGAATGTGGTGCCCCCCCCCCCCCCCAGCACCTTGATAACAGTTGCATTTATAGCTGCAATGCATTCCAAGGGAGTGCTCCCTGCAGGGAATGCGGTGC--CCCCCAGCACCTCCATGCAGCTCATCGTGGTGCTCTTTG-TTTCACCTGAATCCTTTTTCAGTGGAAACTGTTTGTTACTGATCTTCCTTTCATAGAGCTTCTATT--TTTTTTTTTTTTTTTCCTAAACTTGAGTTTAAAGGTCCTTGTTCTGTTGATAGGTACGGTAACATGCTTACAGCTAGCCCTCTCCTAAGTATCAGCACTTTAAACAAATTCCAAATTTTTAAACTTGCTTCCTAGTA---AGTGCATGTAAGTCAGATTATTTTT------AATGGAATATGGATGCATTGGTGTCAATTTTAAAAAA-------TAAATATGTATTTTGGACAATTATGTA---TTAATGATTTCAAAATAAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAACATTTTATATG-TAACAATATATTTGTTATAGGCTAAACGTCCAGAAACAC---ACAAGATTGA----------AAGTTCTTTTTTTTTAAGTCATAGGAAAATAATTA-TTGATTTGTCTCCAAAGTGTTAAAATCATGCATTACTCACTTTTACACCtaaatttttttcatatttattaaaaaataGTTTAAAGATCCAAGAAAGAAAAG----TAGGGAGAATAATGTTCA--AATCACAATAGTATCATGTTTTATTAA-AGACTTAGCTAAATGTTTG-------TGTCCTGATGAGATGTGTCAAG-ATACATTTGTCAGGTTGTTACAGTGTGACTAGTAGTTTAAAC---------------------TTTGA--------CCAAGACTTTTATTGAA-AGATGACTTATTTAAAAATCCAAAGTGTTAGCCATAAGATAGTT-------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTC------TCttttttttttaaatttatttaatgtgg-------------gtacactgtagctgtct----tcagacacaccagaa-----------tagggcatcagattccat---------tacagg------tggttgtgagccaccatgtggttgctgggaattgaactcaggacctctggaagaacaggtagtgctcttaaccactgagccatctctccagtcccCGATATTTATCTC----------------------------------TTTACAGTTGCA---------------TCTCACATAGTGATACCACCTGGCATATGTTGACATTT---TACTTTTT----CTAAGAAAAATAATTGAGTTAAAAAAATCAAAGCCCTCACCACTCCAGTAAGT-GATCTATTTAGTTTTAAG-----AACTGAGAAGCCCAAAGCTAGCATG-----------ATGAAATGGAGGC-AGTGGCTGATCCAGTGACTTAGCTATTTAGTTCTGTTGTCAATCATGATTCCAAGGTT-----CTGAAAGGCAGTGACACTGTTGCTTTAGGCTCATTGGCTTGAA---------------CATGTA-------GGAAGAAATGATAAATTTGCAGCTTGGGATTTAGAATTTCTTAAACATGTGAATATTTTGCTGGGTAACACTGGAGATAGGACTACTGAAAATTGTTGCACTGGATTGTACTACTGAAAATGGTTGCACTGGATTGTTTTGAGACTTCAATTTACCTTTAATGAGTAGTAGAATCAGATTGTCCATTCCAAAATGTTTTTTCTCTGATCACAAAGAACAAGT----GTATCTCTTATGATGGTGGAAAAAAAAGGAGTTAATTAATGCAAATAAACTTTTCACAATATTAGACTTTTCATGATGTGCCTATTAATCCTGTTAACATCAGTGTTTTTGTATACTCTT
s HiC_scaffold_1 145344892 2753 + 233722169 TCTGCAGATATCCCTGTGTTTCCCACCATCACAGCCACTGTGACTTTTCAGGAGTTTCGGTATGATGAGTTCGATGGCTCCATCTTCACCATCCCTGAAGACTACAAGGAGGACCCAAGTCGTTTTCCTGACCTTTAGCCGAGAAGGGGGATGGTGTCATGGAATCAAGAGAACGCAGAGACCCCGAAGCGAATCCGAGCCGAAGGGACAAATGCCGTCCGTGGAGACAGGGAACCGGGAACAGACTG--GACACACCAGCGACAGGGTGAAAGAGCCAGGCCTCTAGCAGCATTGCGTGGGTTTCCCGACGTGCCATTTCCGC-TCTTTTTAGAAT------CTAAGTGTGATAG-TTGACACCTTACTGACCCCAAGACCTTCGTATGTAAAGCAGCTATCAGTGCtgtgatttgtttttaaagattttcacac-----gttgaaatatatatgcatataaatatatctgtatctatatctactCTAACACTCCTGGACCATTAACGTAAAGTCAGTGTCTTAAGAGAGGTGACGCCCTTTTAAACTTGGCACCTTATATTCAAGGTGACATTTATAAATACTCCTTTGAGCTTTGTTTTCACAAACTGTAACTATGTAACATTATGTACAGCTGAGTCATCGGGATATGTGTTCAGTATAATGAACTAGAAGGAACCAAAT-------GGTGGCC---GCAAGG--------CAGTTGCATTT-----------------------------------CTGCAAGG----------------------------------TGATGGTGGC-----------------------GGAGGGCACTCACTGCAGGGAATAAGGTACCTCCTCTAGCACCTTAGTGC-GCTCATTGTGGTGCTATTTGTTTTTACCTGATTCTTTCTCCAGCGGGAAGC-TTGGGTACTAATCTTCCTATCCTGGACCCTCTATTGCTTTCTTCCTCCTGTTCCTAGGGT-----------------------------------GTGGCATGCTTAGAGACTGTCCTCCTCCGAATCTCAGCACTTTACACAGACTCCAGATTTTTTAACTTGCTTCCTAATAATTAGTGCACAt--gtctgattgttttgtttttaagttggaTGTGGAAACATTcttgtcattttaaagaaaatggcaCCAATCATGTATTCTGGACAACCCTGCATATTTCACAGGTTCATGATGGGGCTGTAATTCATCTTGCTGCGGGTGCCTTGAGCCAGCGGTGTACGTGTGTGACTGGCCCCTTGGGTGGCTTATTAGTTTTATTAGTAGAAAGGCCAAGAAAGTGATGAGATCCTTTTGTGCCACCACTGGTAAGCACCACCCCCCCAGTCACGTCATCACCCGAGACTCGGGCCAGTGAGAGCGTTACTGTTTTCAGACACATTTTCTCTTCTAACCGTGTATTTGTTACAAGCTGAA-GTCCAGATGCCTATAACAAGGTTGGTGATtcctattagttttttttttccaagacacaggaaattactgattttaattgtttccaAAGTGTTAAAATCATGT-TCACTCATTTTTGTacttaaaatttttg-atatttatttcaaGCTGGTTTGAAGGTCCAAGAATGAAAAACAGTTAGGGAGAATAATGTGTAACAGTCATAA-AGTGTTGTGTTGTGTTAATAAGCTGatccaaatgtttttaaaatctgtcctGATGA-ATTTGTCAAGTTTGCAACTGTCACGTTTTT--AGAGTGACCAGTATTTCAAATACTTTCTGGAAGTTTAGAGAATTTGAAATGAGTTTAGAGACCTTTATTGAAGAGATGATTTATTGAAGAATCCAAAGCATCAaccataaaatttttataataaacacTTGTTCTCTTATTACTAGTATATGTTTGCTCTACAGTCAAATTCATCTTAGAGGATTCATAAATTTCCAGACTGCATCCTAATCATTTGTatgctttcccttccttccccatcAGCCTTTCTCCTTCTGATTCCCACACCCCCTCCCTGTCTCCATATATCTCCCTGCTTCAAatcccttttattttgttccttaaattatttatacgttgggtttctcatataagcaaAACCAGTAATAAACAACTTTAAAACTGCATCTTCCACACTGGTACATACATGGCCGAATGGtcttg-----ttttgtgg-tgctggggattgaacccagaacctttg-----------------------cactgagttacacccccag-cccttcttttaatttttgagatagggtcacatggagttgcccaggctggatttggacttgcagtcctcctgcctcagtctcccagagtgcagggattacagatgtgttacCAGCTGAGTACATTTTACagtgaagaaaaataatcatagttaaaaattcaaagacctgatCACTACCTTCTCTGGATCTGCTGGATTGTGAGGGACAAACTGATAA-CCCAGAGCTGGCTTTGAGAAGCTTTCACGAGTTGGGGGCAAGTTGTAGA--CAAGGACTCAG--ACTGAACTGTCCTGCCA---GTGGTTCCGAGGTTTGAGGCCAAAAGGTGGCAAGG-----GCCTTGGACTCCCTTGGTGGGGTTGTGGCGTAGTTTCCAAGTACAGCTTGGAAAGTGCCGGTGGCAT--CAGCATGGGGTTATCAGTTTGCTAACCC--TGAGTATTCTGCTGGGAGTCAGTGGA-----GACTACTGAAGATTTTTGCACT---------------------------tgggtttttttaaaactcaCCTTTTCCTTTAAAGAATAGTAGAAACAG--TATCCATTCCAAAATGTCTTTTCTCTGATCATACAGAACAAATGTCAGTATCTTTTATGATGGTGGAAAAA---------TGTTAATGCAAATAAAC--TTCACAATATTAGA-TTTTCAAAAcgtgcc-atttatttatttagctttcttgctttttttttttttt

a score=72032
s chr3           158010345 2667 + 160039680 AATGTCACCTACATTCAGCTTTGTTTTAAAATGTAGTGGTTACTCAGACCATTACTAGAATTTGATGCATTTGTCATAAACCAAAAT-------ATAAAAGTATCATACCATCTTTTAAAAAGTTACTCAAATACAAACTTGAAAAA---TGCTTTTATATACCAGAATTCAATTTTAATA---ATTTATATCCAAAC---CTTTTA---GACTATAAACTTGTCTCAATCTTCCTTTCTCTAAGCCACCCAACA--CTAGCC--------ATCTACCTGTTTAATATTGTAATACAGTA--CAAATGTGACCAACG-ACATGCGATTTTAGAAAGGCAAATTTCTGTAATTTCAGTGAAAATATAAATTTGCTAGGTATAGGTGAG----ATCATATTTATTCCTAAGACACTGTTGGATGAACTTAGTTCTGTACTAA-AACACAGGTTAAACCATAATTTAGACAGAAGGTACTGGTGACGATTCTGCAGGCATCTACA-ACAAGGGGGTAGACTCCAGTTATTGT--TTGAATATG--TAGACAGG-------------------GAATGATGCAGCTGACATATGTTCAACC-TGTGAATAAACACAACC-CAGCTCTACAGAAGCATGACTTGTGAGTTTAAGGGTTTTATTATCAAAGTCTTGTAAAACAATTTCAGAAACTGTACATCAACATGGCACAGACTGTAGCCTACTTTTGTTTTAACTGCACAAAAGTAAAGCTTGTAACTA--------AGAAAACAGTTGCCTACCTAGTCTGCATATAACATGGAATCACTGTGCAT----AAGATACTACTGCAATCAAAGTAACACAAGTTTATTGGTTTTATACAACTTGAGATCAAATAAAAGTACATTATCAAGGAGAGCTGTCGTATTTTAAAAGCACATGAAGGTCAATTTAAAATGCACCACCACTTCTTGTTCAACAGTGAGCTTTAAAAACTAAAAGTTGAAAACTGAAAATCAGGACAAGG----TCATTTTCT------------------AGTGATGGGCTGCGTTCACTGGTAGAGATGTGAAATAAATTATTGGGGGAAAAA-----CATAAGTAGCTATGAAAAAGTGAACAA--CTAATTCAAAACATCA-TATTTT----ACAGCC--AGTTTTCTTTGAAAAATTTTTACTGTAATTTAAAGCCTACTTAGCCATCAAAAAAGGTTAGTGCATATATAACCTTTGAAAGTTAAAC-AAAGCCACAAAAATTTAGCCACAAGGCTCAAAAGGCTTATCTATCACAAATGTTTTTTTTCAGATGTAACTCTAAGAATGTTAATTTGTCATGTCAACAAACAAGACCATTAAATAGGTCACCGTGTCAGAAAGTTTCATGACGTTTGGG-----------GTAACATGCAATCAGTGCATTCCCTACATGGCTCTATCACGGCAAGGACTCAAACTCTAGAAATATTCTAAGTGAACGCACTGAGGATCATAGACAG------------AGACAATCCATGCCTGCTGGAGATGCATGCAGCTGTTCATCTGTGTTAAAGCAGCAGTTGCACAGCTGCTTGATCACGCAAATGGATGTAACCATGGCAATGCTGGTCACCCGGGTACCACTTTATAGCTTTTGCTATAAAGCACTAGAGGTCACAATCAGGTGTTCTGAAGCCATTGGTAATGTGCAGCTGTATACACCTAGGTGAGATGAACACACACAGCATTAGAGATCACAAGGAATGACACTGAGGACCATCTGC-AGCCAGCCTTGGGCTCAGTCACTCATATCCATGTCTTCTTCGTGGTGATCATCCCCGTTCACTTTGGACTCTCGAAG---GTCGCCCACCCCCTTCTCCACAGAGCACTCCTTTGTTTTAGGGGACACTGCTTCTGTTGGTCTCTTCTCCTCTTTCTTTTCCTTCTCACTGTCATAGCCTTGCTCCTCTTCATCATAATCCCGAGTCACCTGCTTTGACAAGGAGAATGGGAAAATAAGCTTCTTCAAAGGAAAAACACTTCTTAGTCAAACAGCAGCAGC---AGCACCATGGTGTCAGCACCCCAGCCTGTATACTTACTTTGACGTCTTTGTCACTCTCAGActtcctttctcgctccttctccttgtctttgctcctcttctttttacttgttgatcgttccctttcatctctgcttctttctttgtccttatctttcttcttctctttttTATGTCTAGAA------AGAATAGTTAAAATCTGTTTA-TAAAGTTGCTTTGCAAAAACTCCTGACAGTTTAATTCCTAAGTGAGCAACAGGTCT-----TAAGATGATGAGCTTAATCAAGCTCT------CTAGAAAGGATGCAAAGAGCTGGGTAATCAAAGTAAGAATTTAAGCTGGATAGAGCCCTAAAGTGCTAATCATCCCAAAAAAGTACATACTA---GAAATGTCAAGAGAACAATGCC---TTAAATTCCCCCCAAAGAAAATTACTGCACATGTATAAAAGAAATCTAATAATTTAAAAAACATTAGTCCCAAATATTACAAATCACAGATATA-AATGATA--CCCCTACCTCCTTGGGGATGGTGAGCGAGACAGCTTTCTTTTAGGAGACCTGGGCTTTTTAGGGGATCTTGTACCACTCCTACTTCGCCGTCGTCTTCTCTCTCTAGAATCACAAACGTGCAAACTAGGCTTTAAAATATAGTGTGGTCTCAGCAGCTCCACTAGGAGCTTCCACAG------------------CCCGAGACCTGCCTCACAATACTGTTTTAGGCAATAACAATCTCAAGCTTAAGAAAAGACTAA
s HiC_scaffold_1 145349546 2652 + 233722169 AATGTTGTTTGCATCCCACTGTTTAAAAAAACGCCGTGATTGTTCAGCCCATTATTAAAACTTCCTATGTGTGCCCTAGATAAAATTCCTgttaataaaa------------tctttaaaaagtta----actaCAAACTGTAAAAACACTGCTTTTCTATATGGCATTTCAATTTTAGAACAGATTTTTGGAAAAACGAACTTATACTTGGATAAAAGCTAGTTCCAAGTCTGTGAAGCCCAGGGC-CCAAACATGCTAGTTCCTCCTGGATATATCTGCTACTTGGTGAGGTCCAGCAGGTACAGATGACGGACATCCACACTGCTTCAGAAAGGCAAGCATATGCA--CCCACTGAAAACACAAACATCCTAGTCGGAGGTGTGTGTACCCAACCCCAGCCCCTGGCCAGGGTTCCAAGAGAGAAAGACAGCGGCAATAAGACAGGCT---------TTCGGATAGAAGCC-----------TGCTACATGCCCCTCCGCAGCGGGAGACGTTCTCCTGGGACTGCGGCCGGATGTGGGCAGACAGGCAAAGAGATCAGATCTGGAAAATGAGGTAAATGTCATACATTCAACAgcgtaaataaatacaaatacggGTTTACAGGAACATGAAC-GTAAGTTTGAGGGTTTTATTATCAAAGTCTTGTAAAACAACTTCAGAAACTGTACATCAACATGGCACAGACTGTAGCCTACTTTTGTTTTTACTGCACAAAAGTAAAGCCTGGAACTCCTGGAACTAAGAAACGGCTGCCTAACTACTTTGCAGAT-------AATCACTGTGTGCGTTAAGGTTACTACTGCAGTAATAAGAACACAAATTTATTGGTTTTATACAACTGGAGATCAAATAAAAGTACATTATCAAGtagatttg-----ttttaaaagtatgtgACGATCCATTTAAAATGCACTAGCCCCTTTTTTCCAACACTgagtttaaaacaacaaaagtgaaaaattgaaAATCGGGACAAGAGATTTAAGTTTCTTTTACAGGTGAACCCGGGAGAGGCGGACAGTTCTCACTGATGTAGAGGTGGAATAAAttactttgggaaaaaaaattcccaaacacCTATGAAAACGTATACAATTCTATCTCAAAATGTTGCTAATTTACTCACTGCCAAAGAATTTTATGTGAAATCGTTTCTGCAA-TTGAAGCCTAATTAGCCATCAAAAAAGGTTAGTGCATACTTAACCTTTCAGAGTTAAACAAAAGCCACAAAACTCGAGCCACAAGGCT-GGAAGGGTTATCTATCTCAAATG-CTGTTTCCAGATGTACCTCTAAGAGTGTTACTTCGTCACGTCCACAAACAAGACCA--AAGGAGATCGTCCCGGGGAGGACCTTGACAACATGGGGGTTCTTGCCACAATTACATGCAATCAGTGCATT-CCTACATGGCTCTATTACGGCAACGAC-CAAGTCCTAGAGA---CTAAAGTGAACGTACTGAGGA--AGGGGCGTGCGTGACGCTGCAGACGACCCGTGCCTGCTGAGGACGCATGCAGT------------------------------------------------------------------------GTCACTC---TGCTGCTCTGCAGACCTCGCCGTGAAGGG---------------AGCTGTCCCAGCGCCACTCCAAGAGCTCAG------------------GATGCACACACCCAATGTC-----CCGCCGGGAGCGCCCTC----CCCGTTCCCAAGGCGGGGCTCGGCTCAGTCACTCATGTCCATGTCCTCCTCGTGGTGGTCATCCCCGTTCACCTTGGACTCACGCAGCACGTCACCCGCAGACTTCTCCACGGCGCACTCCTTAGTCTTGGGGGACCCTGCCTCCACgggcttcttttcctccttcttctccttctcgcTGTCGTAGCCCTGCTCCTCCTCGTCGTAGTCCCGTGTGACCTGCTTTCCCGAGAACA--GCGCAAGTGAGCCTCCTCCCTGTGCAGTGGCCCCCCGCCCAGCCCATGGTCCCCCGAACCCCACCG----GACACCCCGGCCTGCATACATACTTTCACATCCTTGTCACTCTCTGATTTTCTCTCccgctccttctccttctctttactctttttctttttgcttgtcgAGCGCTCCCTCTCATCTCTGCTTcgctctttgtctctgtctttcttcttctcctttttatgtCTAGAACAAGGGAGACCCGTCAGGTTGTGCTCAGGAGAGATGTGT--CCAGGGCCCAGGGAAGCTGCACCC-----TCAGCGACAGGTGTCCTGCTGGAGTGGCCAGCTTGACCCAAGTCCAAAACACCACGGACAAAGGCAGGAGCCGTGG----GAGAGAAGACTGTGAGCCAGGGTCAGGCCTAATGAGGGGAT--TTCCGGGGTGGGACTGGCCATGCGAGGGGGCACAAGGACACTGGCATTTCAAATCCCTGCAGAAGAAGCAGAGCTCTAAGGTGTTAAAAATACAGGACGTTTCTAAAGCCTACAGCTGCCAACAGTGCTGAGGGAGGTTATGCCACGACACGCCCCTACCTTCTGGGGGACGGGGAGTGTGACATTTTCCTCTTGGGTGACCGAGGCTTTTTGGGGGATCTCGTTCCACTCCTGCTTCTCCGTCGTCGTCTCTCTCTGGAATTACAGACGTGCAAACTACACTTTAAGATACAGTACGATCTC--TAGCGCCACGAGGAGCCTGTCCAGTGAGTGTACCTCTAAGGACTCGAGACCTGTTTCTCAGTGCTGTTTGGAGCTAGAACTATTACGAACTTTGGGAAACACAAA

a score=8622
s chr3           158013907 152 + 160039680 TGCTGAACAGCCATGCCCCCAGGC-----CTCAGGTGCTGCTGCCT---TACCTGCTTGCACTCCGAGAGCGTCTGGCTGTGCTGTAGCTTTTTGGTGGAGTTTTGGAACGTTTCTTTTCTTTATCTTCTTTCTTTTTGTCTCTAGCAA----ACAAAATTTAA
s HiC_scaffold_1 145353026 164 + 233722169 TGCTGttcagctgtgtccccagcctgaAACACGAGTTTTCATGTCTAATTACCTGCTTGCACTTCTGGACCGTCTGGCTGTGCTGTAGCTTTTTGGTGGTGTTTTGGAGCGtttcttctctttgtcttctttctttttatctctaaCAAATGTATACAATTTAA

a score=9969
s chr3           158016318 148 + 160039680 TACCTGGCTTTGGATGTGCTCCTTGACCTTCTACCCCTCTCTCGGGAATGAGATCGTCTCCGTCTTGGACTTTTGGATCTCCTTCTACTCCTGGATTTGGAGTGTGACCGCCTCCTTGACCGGCTTCGTGACCGCCTAAAAATGTACA
s HiC_scaffold_1 145353564 148 + 233722169 TACCTGGTCTTCGATGTGCTCCTTGACCTCCgacctctctctctggaatgggATCTCCTCCGTCTGGGACTTTTTGACCGTCGTCTACTCCTTGACTTAGAATGTGATCGCCTCCTTGACCGGCTTCTTGATCGCCTAATAATGAACA

a score=8652
s chr3           158017798 132 + 160039680 AGAGAGCTAACCTGTGTCTGGAGGATGAGGGGGTCCTCCTCCTCCTCGAGCGAGATCTTGATCTCGAATGTCTTCTCTTTTCTTCCTTCTTGTCTGATTTAAGAAAAGAAAGAAAAAACTGTATTAAGAAAT
s HiC_scaffold_1 145355231 130 + 233722169 AGCGACCTGACCTGTGTCTGGAAGATGAGGGTGTCCTCCTCCTCCTAGAGCGCGATCTTGATCTTGAatgccttctcttttcttctttcttatctgattta--aaaggaaacaaatatttatgtttagAAAT

a score=13758
s chr3           158019209 357 + 160039680 AACAAAAC--AAAAACGACAAGAATGTTATTCAACAACTTCTACATGTAGGCCATTACCAGCTTTACCAAGAACTAAAATTTAACA-----------TGTGTATGAGCATTTTACCTGGCTCAATAGCGGCAGAAATCAGGGACTGGGCTTCACGCACTCTCTTCATGGCTTCCTCTATTTCTTTACTAGAGGTGTCTGACTTCAGACTTGGTGAAACAAGACCAGCTGCTACATGATTCAATCTGGAGCA-AGAAAACAGTTTAAAATTTAAGCTTCC----ATTTCAAGTAAACAGGTATGTTTCACATACCATCATTATTTGTAAATAATCCTTGAAAGCAAAATACCGGGAA---CCACCATTTTAATAAGCAG
s HiC_scaffold_1 145356869 374 + 233722169 AGCAGAACTTGAAAACGTTAAGAGGACTGCTCAACA---TGCACACCGGGGCCATCGTCATCACTGATAAGAAACACGGCTTAATACTCAGTGACACTGCATAAGGGCGTTTTACCTGGTTCAATAGCAGCAGATATCAGGGACTGTGCTTCTCGTACTCTCTTCATAGCTTCCTCTATTTCTTTACTAGAGGTATCTGATTTCAGACTTGGTGAAACAAGCCCAGCGGCTACATGATTCAACCTGAAACAGAGCCAAGAATTGAGAATGGAAATATTCTGAAACTTCAATTAAGTATTTATG-TGCATATAACACCatttcagtaaaatatttcttgattttaaaaaaggggagaattccATGACTTCAGTATACAG

a score=8660
s chr3           158021136 1071 + 160039680 AGAAACTATTCTTaacttggtatagtggtctatgcctggaatcccagca------------cttggacaggaattt---gagttcaggcttgaccacatagtgaac-atatggcaaaactatattacacagatataaaatatatta-catataaaactatattatatGTACCTCAAGAAGAAAACAAAAGTAAGTGTTCTTTTGACAGTTATACAGTATAAAACCAAAAGAGACAAATACAAATGAGAAAGCTTACTTGGGATCAACAGTACTCATAAGTTTCAATAGCTGGTCTGCAGCAAGGGACTaaaaaaaaaaaaaaaaaaaaaaGACAATGAACACACAG--CAATAAGTGACTGTTATTTTA-------AGTTTCTTGAAAAGTTGTGGGACAAACTGGCAACCTATAAAG--TGCAATGCTTTGTGTATATCCATG-GCAA-AAAGGTAAAATGCAAATTATG--------------------------------AATTC-----TAACAATGGGTAACTTTGTGGCTAAGCCTATAGAAGAG-GAGGGAAGCAAATTATC--AAGAGTAAGGCTGAGCAGTCTG-----------GGTTTATT----------------AGGATCAGCTCTTGCTTATTCTAAAGACTTAAAATAGAAAATCTGAAACTCCTTAGA----GTAACAGAACATCTCTAAAAAGTACAAA-----------------------------------------------CTCCAAGAAAC-------AAAATATTCT-----------------------CTAAATG------TGTC--------------------------------------AAGGATTAATGA-----------CTGATGTAAT-TCA-----------GTGGTCATTTAAAAA-------TCTCTTTCAA----ATAAGTCAACAGAGTAAAA----AGATTACA-----------ACACAATCAGCTAACC-------------------------CTTGCTTTGAAATGCAAACCAAGGTTTAATGAAATAAT-ACCCTACAAAC---------ACAAGCT--CACAAATGAAAGGTA-----GTAAGATA---------------------------------------------------------------------TACCTGAGAGTTCAAGTTTGTTCCTGGAAGCCCAAGAGCAGCAAGGGCAGGATCAAGAGCTGGAGCTCCCAACGCAGCCAGGGGAACAGCGCCAATCTGCAACAGGTAAGGGTTTATTATATAAAACATCTTTAACTTTCAGTATTGGGCTAGAC---ACTAACTTT-------------------TTCATTTATA---AAAGTACTAC--TGCCATGGTTCAAATTCTGCTGTATAAACTATCTAAAAACTGGACATAATTATGTCCCAGTAAAAAT
s HiC_scaffold_1 145358200 1389 + 233722169 AGTAACTATCCTCA-CCAGGTATGGTTGTGcgtgcctgttatcccagcagcTAAGAGgctgctaaggcaggagggtcacgagttcaaggccagcc------tgagctacatagcaagactgtttccgaaagaaaagaaagagacaaacagaCAAA---------TAGGTAACTATCTAGGAA------------------TCTACCTACTACACAGTGGAAGA----------------------AAAGGGCTTACTTGGGATCGACGGTACTCATAAGCTTCAGCAACTGATCTGCGGCAAGagactacaaaaaataaaaacgtaACAGCAATGAGAACACACAGAACAATAAACTACTGCTATTTTATCTTTTCAGTATGTTGAAAGGTC----------CTGCCaacttataaaaattaacatgttCTCTGCATAATGCTGAGCAGTAAAAACACAATGCAAGTTATGTGCAATTAAATGTTTTAGTAGCCACactaaaaaatccaaaaataacaaGTGGCA--TTGGTAGCTCTACTGATTAAACAGCTCATTTAGTAAGTTACCTGAAAACTGAGGCTAAACAGTCTGCATGACAGAGTGACTTATTTTAAGATATTCAGAgaaaaagtag--------tattttaaaaatacatttaaaagaagcTTAAATTCCTCAGATAGTATATCAGAACATCTCCAGAAAATTAAGAACTTCTTcagaagctggacatggtggcacacacctgtaatcccagcactctaagaggctgaggcagaaagattccaACTTCCAgctcagccagggcaacttagtgagatcctgtctcagaataaaaaaataaaaataaaaaaagggtggagatgaGGCTTAATGATACGGCTCTGTCTAGAGTATTATcaaaaaaaaggctgaggactttaaaaaaaagagcttacatttcaatgacaaaaacaaaaataataaaagctcaGACTGCAGCCCTCTACTCACGTGGTACACTGACCGCGTGGCGGATGCCAGGATCCTTTTCTTACCCCAAACTGTGAG----AGGCTAATGACGTAGTGACCCTGGAAGTTTCCTTTCTACAAGCCAGCACGAGTCAGAAGTGTCACTGTGAGACAGTGGTTACCCACTCTTGACAAAAAACACACAGTGCAGTCTCCTGGCCAGAGGCCGCATGGCAGGTCGCGTACCTGTGAGTTCAAGTTTGCTCCAGGAAGCCCCAGGGCAGCGAGGGCAGGGTCTAGAGTGGGAGCTCCCAAAGCCGCCAGTGGAACAGCGCCAATCTGC--CAAGAAACgtttctttatttaaaac----tgCACTTCTGTTA--GGGCCAGACAGTACTGGTTTTGGGGTCACTGCAGCAACCACTCACCTGTATACAAAGTCATACAACACAGTAGTTCAAATTCAGC--CATAGACCATA-AAGGAGTGGGCTTGGTGTTAGCTAAACAAAAAT

a score=229729
s chr3           158022835 4249 + 160039680 [encoded data, 4376 characters]
s HiC_scaffold_1 145361178 4104 + 233722169 [encoded data, 4376 characters]

a score=9463
s chr3           158031397 229 + 160039680 CGCGCGCCTC-----GCCTCACCGGAAGGGCCTCGGGCCCGCAGCGCCCCGGTACTCACTCCGGCGGGAAGAGGCGCAGCTCGTCGATCTTGCCCAGGAAGCCGAAGAGCGTACGCATCTGCTCTGAGCTGGCGC-TCGGAGACACGTTGGTCACCTGGATCACCTC-GGTGCCGCCGCCTGGCCCGCCACTGGGGCCTGGGCCCGGGCCTGGCGCGCTGGGGACCACTGCCGTGC
s HiC_scaffold_1 145370014 231 + 233722169 CGCGCACCCCCACAGGCCTGAACCACCCGGCCAGAGCCTGGCCGCGCT---GTACTCACTCCGGCGGGAAGAGGCGCAGTTCGTCTATCTTGCCGAGAAAGCCGAAGAGCGTCCGCATCTGCTCGGAGCTGGCGCTTCGGGGAGACATTGGCCACCTGGATCCTTTCGGGGGCCGCGGCAAcggccgccgccgccgcggcGGCCGGGCCCCGCCGGGT--GGGGCCCCGGCCCCGC

a score=12132
s chr3           158036480 402 + 160039680 CCACGAGGACCTCTCAG-CCCGTTAGACGCACTTACCCGAAAGAAGTTTCTCCTGAGGGCGAGGTTGGTGAGGGCAACGGAAGGG-CTCGTCGGTCCTGCGGTCCCGGGAGCTGGCGGTGACGACATCAGCGCGCGCAGC---TAGGGCAAGGCCCGGATTACTGTGAGGCGGAAGGGGCGGGGTTATCCAGC---CATG-GCACCTTGAAACGTC----ACAGCCG--TGGT--------------CGGGGCTTCCGGTGTGAGCTT------TTGAATATGTCGCGCCAGCTGAGAGCCCCTAGGTTTGACCCTCGTGCGGGATTCCACGCGGAGGGCAAGGACAGAGGCCCCTCTGTTCCCCAGGGCCTGCTGAAGGCAGCGAGAAGCAGCGGCCAACTCAACTTGGCGGGAAGGAACCTCGGGGAAGGTGAGG
s HiC_scaffold_1 145381659 433 + 233722169 CCTCAAGCTCCTCTTAAACCCGTTAAACGCACTTACTTCAGCGAAGTATTTCCAGAGCGGTAGGCCGGCACCGGCAACGGAAAGGACTCCTCTGTCCTCCAGCCCCGGGAGCTGGCGGTGACGACATCTAGGCGCGCCGCAAACAGGGAAAGCCCCCG--CGCCGGGATGCCG--GAGCCCGGCGCACACAGCGCGCGTGCGCACTCGCAAGAGCCGGGGACGGCTGGGTGGTGCCGCTTTTACGCGCGGAGCTCTGCCTGGGAGGCTGGTGGTTTGAACATGTCGCGCCTGCAGGGAGTTGCCAGGCGGGATCCGCGGGCTGGTTTCAGGGCAGAGAGGACAGATGGCAATACTTCGATACCCCAGGGGCTGTTGAAGGCGGCGAGGAAGAGCGGCCAGTTAAACTTGTCTGGTAGGAACCTCAGCGAAGGTAAGG

a score=28756
s chr3           158040420 1723 + 160039680 TGTGGTGGTGATGGAGATAGTCCCTCAGTGTGTTTGGAGAATAAATGTGGACATTCCTGAAGAGGCTAATCAGAATCTTTCATTCAGTTCTACTGAACGATGGTGGGATCAGACAGATCTGACCAAACTCATCATCTCCAGCAATAAACTTCAGTCTCTCTCTGATGACCTCCGACTCTTGCCTGCCCTTACTGTTCTTGATGTAAGTTGACTATAATTATGGGATCTTAGTTAAACAAACTGAATTTAGGTAAGTTGA---------AGAGCTAAATTTAGAAGTTGCTAAACAGGAAGCCTTCCTTGCTGAGCTTGTAGAATGCAAGACA----AATTTAAAAAACTGA--------------------CTTGGAAGATCGGC--TCCATGTCTCTATGTCCACAGACCTGGTGTAGATGCTGTGATTAAATGAGTCATGTG---------TGCAAACAGAACTGGCACTTGGCTT-------CTTGTTTTTGTTTTTTATTTCCCCTTGT-------TAAATTTTATTTTAGACACTAAAGCAAATACAGTACTCAGGG-GTCTTTTGTGTTCCTGTTTCAGAACTTGCCCTTAGACTCATTGACTGTAACTATTTACCTGAATT----TTTTGTGTTCTTAGT-TGGGTCtttttttttttttttttttttttGTAGTGAAAGTTGACCTATCATGTGATAAGTGAACCATGAAGGGTGTACTTTAGAATCTACAGGCCTTTAGTGA----ACTGGGTCATGTCCAAACTCTT-CAACTCGTG--TGTGGAAATGGTGGATGTAAACAGTG-CCATTCTTGAGGAACAAAAAGTTT--TGTTTTGTGtctgtaaaataacaaaacaatagtctggcttattctgaggttctttctactgtgaagatgctatgattctgtgaGACTGTAAAG-------------CTGTTCTCCCAG------------CTCATATCTGTTCTGTGTGTGATATTAAGAGACCA----------CCAGAACTCTGCTGCTGTTGACGCCTCCTCAAGT---------------------CAAGTCTGTGTTTGTTTCTTTTCATTTTAGT----------AATGACTTATTTGTTCACAATTTCTGGACAGCAGTTTGGTCAATATACACAGAA------------------------TAAATTACTAATCACCCAACACATTGCCATTTAATATGAAAAACAGGAGT-TTAGTAAATTATTTTTTTTCAATGGCAAAGCTCAACTATTGCTAATTGTAAGACTAAGAATATTGACTTTGTCTTGTAATCATTTTAGATACATGATAATCAGCTGACATCTCTTCCTTCAGCTATAAGAGAGCTAGACAATCTTCAGAAACTTAATGTCAGGTAAAGTGTGAACCTGTTTCTAAAACTGAAATCCCTTTTCTTCA--CATAGAAAATAACCTTGAACTACAGTGTGGCCCAGTAGGAATC-AGGCTTGGTT--------AAACACCTGCC-----------AGATGCTGTATTCTA--CCCAAGAGGAGAAAACAAGACCAGATCTTTACATCATCCCAGAGAAT--TTAATGAATCA-----ATTATTTGTTTTCTCTCT----TTAGTGGAATCTTGC-TGTTTGGCCCAGTGTAAAA-----CCACAGTGCTGTGCTTTG--------GGACTCGTGTCTTAGTCACACAGGTCTGTGGGGCT----------CTTCACAGCAACTTTGTCTGTGTGTTTTGTTTTTAGCATTTATTACATCCTCTTTGATTCTACAGATTTAAGGCCAATTGATTTTTGT------ATATTTTATGTTTATGAGACACTTT----TGGCTCTTGT-TTTAGAAAACTTCTTTCTCAGAATCTCAAGTTTTAATTTACATTTTTAGCCTGAAAA--TCTAGGTATTACACAGTA
s HiC_scaffold_1 145389585 1848 + 233722169 tgtggtggtggtggaaaCAGTGCCCCAGTGTGTGTGGAGAATCAATGTGGATGTCCCTGAGGAGGCCAACCAGAATCTGTCCTTCAGCGCCGCCGACCGGTGGTGGGAGCAGACGGACCTGACCAAGCTTGTCCTCTCCAACAATCACCTCCGGTCACTCTCGGATGACCTTCGCCTCCTGCCTGCACTGACCGTTCTCGATGTGAGTTGACACTAATTATGGG-----------------------TGGGGAAGTGCAGGAGACCCCAGAGCTGCACTTTGGCTCTCCGAAGTACAAAACCCTT----CAGAATGTGGAGGAGGCATGGCGTGATAATTAAGAGCGCAGAGCACCAGGCTTGGATCGGACCTGGGAAGGCCGTCTGTCCATGCCTCGGTCTCTGT--GCCTGGCCCCGAGGTGGGGGGTA---GTGCCTTGTGAAATCGCTCTGCAAGTGGAAGTGATTTTTCGCCTTCATTTACTTCCACTCATgtttttcttactgttgttttaacATCACTGTTATTCTAGACACCGCAGCAAGTACAGTGCTTAGGatgacatttattttact-ttttgtaacTTCCTGGCAATTTCATTGA-TCTACTAAACTACCAGGCTtatacttttgtgtttttattatggG--------------------AGTCTGTGGTCAGGGCCTGGTTCCCATGTCTTG---GTAACATGAAGTG-GTTCT-----------AGGCTGCTGGTGATTATACTTAACAATGTCCAAAGTCTTGAAATTCATGAATATATAGATGTTGGATGTGTGTAGTGAACTTTCTACAGGAGTA-----TTTACTGTCTT-TATTTGTAAGACAAA-----------TTGGcttgttctgtgtttgtttctattttaaaaaca----gtttctgTGAGAACATGAGAGAAattccattttcctttctcatAGAATTCTTACAGTCTCATGTATTTCTCATAAATAATAATGTCGGGCTGTTGTTAGTTTCTAACTCTCTGGTCTGTTTGAAGGAAGATGCAGTgaggtgatgtgtgtgtgtgcacatgtgtgtgcatgtgtgttttctttttgatgtttaAAATGAGTAAGTTATTATTTCATGATTTCTGAGCACCAGTTTGGTCAGTTT---CAaaatccttttcctcctcttaatGCAGTTAGGGTCCCAGGAGCACAGTTCACTGCCACTGAACGAGAAGAACGGGATTATTAGTGAG-TAGTTTTGTACATTGGCAACGGCTAATTATTGTCAATTTTAAGACTAATAATATTGACTTTGTCTTA-----ATTTTAGATACATGATAATCAGCTCACATCACTTCCTGCTGCTATAAGTGAGCTAGAAAATCTTCAGAAGCTCAATGTCAGGTAAAATCTAAGCTTATTTCTAGTATTGCAACTATACTAGTGTAATCCTAGTAATTACATTGGTATAACATTAGAAGGTAGCAGGGGCCTAGGCATGGTTCAGTCACAGAGCACGTACTGAACAGCactgagaccctgggttcaggccTCAGTACTTGCTCCCAAAGT--GATCTTTGTATAATCTCCAAAAATAGCTAAAAGAGAAGGAAGATTTTAAGTTTTAGTTCTCAGATTactgt--tcgtgtgtgtgtgtgtgtgtgtaagagatgGGCTTAG-GCTATGCCTGGCCcaagccaccctcctgcctcaacatcccaAGTACCCAGGGCTACAAATGTACACGCACGGCAGA-TTGTCTTTATG-TTTGCTTTTAGAATTTCTTGCATGTTTTTTGATTC--ATGAATTAAGG-caatcacttttttttaaaaaatgttttctgtgtatgAGATAAATCATGGTGAGTCTTATCTTTAGAAAAGGTCCTTCTTGACATCTCAAGGTTGAATTTAC---TGTTACCTAAAAATGTCTGGGTACAAAGCACTA

a score=17491
s chr3           158043185 509 + 160039680 AAAAATTTAGCTCCATTGCAATGTGTATGTGAACGTATTTTTTTTAGTA---------------ACAATGTAAATATTTAATAAGAGTTTAGTAAGTCCTTTTCACATTACATGTTATATAAACA---------GATTGTAAACAAGCAATCAAAAGTTTACAAATTATTTATGTTTACTTAATATTTTTCATTGCTGGTTTTCTTTCAAACCCTAACTTGGTTGGTTTAAATTTCTGCT-----GATGGTTGTATATTTCGGAGATGGGGGTCTTGATAAACACTTGAACCGGACAGCACCATTTGATAGTTATGATGAGTCTATGTGGTTGGTTGACAAAAGCCTTTGGTAAATACTTCTTAGCCTACTAAGTCATTCAGCTTTTATTTTATTAACTAATAGCCATAACAAACTGAAAATACTGCCTGAAGAAATTACAAGCTTAAAAAACCTGAGGACGCTGCACCTCCAGCACAATGAGC-TGACTTGCATCCCCGAGGGATTTGAGCATCTTTCCTGCTTAGAAGATTTAGTAA
s HiC_scaffold_1 145393084 519 + 233722169 AAAACCTAAATTCCATTGTATTATGTGTGTAAATATAGTTTTGTCAGAATTCTAGAAGTCAGACATAGTATAAGAAATTAA---GAGTCCAATAAGTCCTTT--------CATGTTATATGAAAAATCAAAGTTGATTAttagtaagaaataaaaaatactcaaattattT--GTCTGTTAAAACCCcttatttgttgtttttccttcaaactataatttgattattttagaTTACTGTTCTTTTAAGGAGCATATATATTTGGAATGTGAATTTTGAAAAGTACTTAAATTAGTAATCAT-ATTTCATTTATGTAATGAGTCCATGTAGTTATCTAGCAGTAAC-----ATAAATATTGTGTTGCTTACCAAATtagtcttcatttattttattaaccaATAGCcataataaactgaaaatgcTCCCTGAAGAAATTACAAATCTAAGAAACCTGAAGGGCCTATATGTCCAGCACAATGAACGTAATGTGCTTACCAGAGGGATTTGAACAACTTTCA-GTTTAGAAGATTTAGTAA

a score=17230
s chr3           158048209 725 + 160039680 TAGGAACTgattttaattcctgctcatgactttgatggacagata----atggacctgcaggtgttgaa----------------------------------------gaggagtgaa----------tcctggtctgtcttatttca----aaaTTTTCTAATAACTCTGAAATTCCTTTCATGGGTATCTGTTTACTGTT--ATTTCCTCACTTACAGATTCATTCTGTCCTTTTTTTTTTTTTAAAGGATCTTTCAAGCAATCGTCTTGCAACTGTGCCTGCTGATTTTGCTTTGCTGTCCAGTCTGTTGCGACTCAATCTTTCCAGTAACCAGCTGAAGAATTTGCCAGCAGAAATAAGCAGAATGAAAAGTAAATCGCC---ATAGTAAATTCTGTATGAATTCGAGGTTAATGCAACTTTCTTTTGGAAAAACAATTGTTAAGATAATTATAGAGAAAGAAAGTATGTTGTTCTTTTTTTTTAATTCTAAATTCAAATGCTACTTAGTAAGATTGTTCTCCAGACAATTG-TATCTAGGGTCTGTCTAAAGAATGATTATCAAAAGACATGTAGCTTATGA-CAAAATGAAATTGTAACTGGTGAGTAGCCGAAAGAACATACAG----GAACTTGATGAAGATTC-----TGCTTCATCCTATCTTCAGCTGACTCCCCCTGTGATGCAGAGGGATTCAGCTGTTGCTTCCCTTGGCTTGGAAGTAATGATGTCTA------GTGAGAGTCCTATTTTGTCTCAGTGCTCAGATTGTTAATTCTTT--TTTTAAAATAA
s HiC_scaffold_1 145396384 778 + 233722169 TAAGAATTCATTCTATTT--TGTCTACTACATTGATGGGCAGACACCTTGTAGGCCTGTAGATTTTGAAAGAATATCAAAATGAATGAAGGTCTGTGAAATTAGCGGTGGAGGCGAGAAAATCTGTCACTCCTGAAGTGGCCTCTTTTATGTTGCATTCTCTCAGAATCATGAAATCCTCTTTAAtgatgtttgcttgtttttctgttttctcatttattcatgcgttttgt--tttttctgttttcaaaggaCCTTTCAAACAACCGTCTTGCAGCTGTTCCTGGTAGTTTTTCTTCTCTACCCAGTCTGATGCGACTCAATCTTTCCAGTAACCAACTGCAGAGTTTGCCAGCAGAAATAAGTAGAATGAAAAGTAAATCTTCTATATTTTAAACCTTGCATGACTTTGAAGTTGATACATATTGCCTGTACAAAACTaagttttaatataattata---caaaaaaatacatagatttttATG---------------GAATAGTAAGTAGTTAGATT-TTCTTTAAACCATAATTGTCTAGCAATTGTCTGAATAGTTACCACCAAAAGGCAcactattaaaaaggaaaaaaaaaatctgact-gtGAATTGTAGTAAAACTATGTAGCTGAGAAATTGGTAAGTTTTCTGCTATGCTGTGTCTCatttttgagagattatttctgtctCAGAAGTGGACACACCCATTG-----TATGTTGTTATAGTACTTACAGCTGTAACACAAGAAGGTCTTGCTTTACTTGAGGACCCAGGTTGTTAGTcctgtcattttaaaatga

a score=33373
s chr3           158051667 1446 + 160039680 tttttattGTCTCTGAATATATATTGTAGGATTAAAGCACTTGGATTGTGATGCCAATCTCCTGGAGACTGTGCCTCCTGATGTGGGTAGCATGGAATCACTGGAATTGCTTTATTTGCGGAGGAATAAATTGCGTGTTCTACCTGAATTTCCTTCTTGTAGGCAGCTAAAGGTACTGTTTAGTTAATAATTATACCTCTGTATGATTTCTAAAACTTTTTTATGAAATTGAAGTTTTTAAAAA-------CTAGCCAATTTTTG---------GGGTATAATCTATGAATGGTATTTTTCTCTGTTGATAT--CTTTCAAAACTTCGATCT-ACTACTAAGAGTACTAATGTTTTCTTGGTAA--------TAAAAAGAAATAATC-ATTTCAGCAGTAGGTTTTGTGTATTTGGTGTAGTGAGTAGTTTTTCCCTAAAGAAGGACCTTATAGTGAGGTGAGAGGCTCTGCTGAGCTGTACTGTGGCTGGCCTGTAGCAGCTGGGGGCACGGGGACTTGTTAGGTTGCCACTTCTCAGGATTACCTGACTGCAGTCACAC---TTCCAAGCTAA--TCTTTTGGTTTGAG--GTATAGCATTAGCACTGCCTCCTAGGTTTGATGTGCTTTAGCTCTTTTT----------------TGAG-GTCCGGCAAGTTTTTTTTTAAAATAGAATTGTGATGGTGAGTTTTTTAAAATGCTGGG---AAATTCCATTCACTATGGTAAGTTTTTAT-TGGTTAT--AGATTCTGTTA--GGAAGTTGGTGTATGTAATGATAATATCCCGTAGTATTTGTTACC---CTGAA---------AACAGTTTTGAATGGGT----TTCTTATGAAACTAGTTTATCATCAGTATTGTGTTTAGATTTATACTTTTACTTCTGTAAGTATAATTAATAAATTGTTTTACTGATTTAGTTTTGTAAAACTG---TTTCTGCAAGGTTAAACAATTATTATTTTGAGATTGTCA----------GAAAAAATTCTTTAATCATATTGTAGCTTTACAAGAGGTTATGTCTAAATGA---------CAT---GATAATTACAATGTT--CTTGTTCTA---TATGTTGCAGTGATTTAAAACTAA-AGTATCCACACTTGTTTTCATTGTTTAGTATACAGTTGAATGAA-----ATATGTTGTACCTGGTTTCATAGGAATTACACCTAGCTGAAAACCAGATAGAGAAGTTAGGGGCAGAGCATCTTCAGCACCTGCAGGCCATCCTTGTCCTGGACCTAAGGGGCAATAAGCTGCGGTCTGTCCCTGAGGAAATGGCCCTGCTGCAGTCTTTGGAAAGGCTTGACCTGAGCAACAATGATATTAGTAGGTATGTTTAAAGATTA-AATGGTAGAA----------ATTAGAGTTTATTCTGCATTGAATTATAATTAGTTTTGTAAGTCCttttaaaa----aaatctattaattatatattGAACTCATGTTGTATACGAAGAAGAATTAGTTTTCTTCCCTGACAGCCAAGTTAATACATTAATGGAAGCAGATGTGT
s HiC_scaffold_1 145399537 1474 + 233722169 TTCTAATTTCCCCTGAATATATATTGCAGAATTAAAGCATTTGGATTGCAATTCAAATGTCTTGGAAACTATACCTCCTGAATTGGCCAGCATGGAGTCCCTAGAACTGCTTTATTTGCGAAGGAATAAATTACGTTTTCTACCAGAATTTCCTTCTTGTAAACTGTTGAAGGTACTGTTTAGTTGATTATTCAATAACTGCATATTTTCCAAAAgttatttatgaaaattaatttgtaaaaaaaatcctGCTAGCCTTCTTTTATGTTGGGCTGATTATTACTCTTCAGTACTGTGTTTGTCTTGTGTTATGCTTTTCAGAATGTCAATATGGCTACTGACAGTAATGATACTG--TTAGTAATCAGTTTTTGAAAAGCTATAATTAacttaaaaagtagaaatttacCATTT-GTTTGGtgaataat-------------------atatatttagtt------------------------------------------------------AATTTTCTAAGTTGCTACTTTTCACATTTACCTGATTGC--TCAGATCtgtttaaaattactttcttttaattttaactgTATAGCATTAATATTCTCTTTTCCATGTACCATCCTTTAggtttctgtatatttttttattgtatGAGTGTTCGGTGTTACTTTTTTCTAAATAGGATAGTGATAGTGA---TTTAAAAGATATGGGATAAACTTTTATTTGCTATGATTAATTTCCATCTAATTGTGAAAATTTTGCTAATGAGAAATAGTATATATAATAACCACTAATGACAGTATTAAATAACAAACTGACTTTATATATAACTTTTTTGAACTTACATAATTGTTTTGAAACTCATTT-TTTTCCATGTAGTTTTTAAATTGATAGTGTCAGTCCTATAAATTTAATCACTAAATCATTGCACTGCTTT--TTTTGTACACTTGACACTTCTACCAAACTCAGCCTTACTTATTTTTAAGCTGcaataaaattcttgaaaaagtttttgccttttttttcagTTGTAAGATGGCTTAAAAGTAATTGAAAATGGAAGCATATGAATAATGGAAaagttgcatttttctaatgtatGTTTCAATGGCTTAGAATTAAGAGtgaccatatttttttttatttggtggtataaaattgaacaaatacaCATAACTGATCTTTGATTTTATAGGAACTGCATGTAGGTGAAAACCAGATTGAAATGTTAGCGGCAGAACACCTTAAGCATCTGAGTTCTATCCTTGTGCTAGACCTGAGGGATAACAAATTAAAATCTGTTCCAGATGAAATTGCACTACTACAGTCTTTGGAAAGGCTGGACCTAAGCAACAATGATATTAGTAGGTAAGTAGAAACATCAGAGTAATGGAAGTTGCCTGTTATTTGGGTATagtttgt-taaaatatttataaaagtcttaattctttttctcacaTTGAATTCACTAAGCATTTATTAAGC----ATTATATGCAAAGAA---------TTATTCTTTG-TAGCCAGCTTGATATCATAATAAAAGCagatatat

a score=20891
s chr3           158054351 620 + 160039680 AGCAGATGCTTTGTAGTGCATGTTCT---TTAGCAGCTGTAGTGTGAGCTTG---GAAATGTATCTGGCCATCTTTCTGTGTGTT-AGCATTAA-----AAGGAAAAGATTTTAGGGGCATTCATGCCTCTTCCTTGAGAT-TATTACAGGATATGTTGTTTTCATTTGTTACT--TTGTAGTCATGACTTTGATTGAATTAGACTTACATGTAATGTTTCC-TTGAAATCAATTTG---TTCTGTAGTCTGCCCTGCTCATTGGGAAATCTTCATTTGAAATTCCTGGCACTAGAAGGAAATCCTCTAAGAACCATTCGAAGAGAAATTATAGCTGTACGTACTATTAGGATTTAGCAACTTATTTTTAAATTAAAATTCAGATATGTATGTTGATGCACAAAACTTCCAAGTGTGCCTTGCTAACAATGTGT-TCTGTCTCCACTCTTTTAGAAAGGAACTCAAGAAGTTCTAAAATACCTGCGCAGCAAGATCAAAGGTACTACTGTTGCCTTC-------------------TGTATTTTGAAGGAATATATGAAAAGTCGTGATGTTAAAAGGACATCAATTTAAATGTTCTTTTGTTATGCTTATTAG--AGGTACAGTGCCTGGCATTCATGGTTCTAATTCTATATTCCTGTA
s HiC_scaffold_1 145404929 658 + 233722169 AGCAAATGTTTTATTGACCACTTtctatttttgcaatttttgtatGACAGTGTCAAAAATATGGATAGCTTTTCTTGTGTGTGTTTAGCATGTATCTTCAGGGAAAATAGTTTAGGCTTAGTAGCAGGGCCTCCTTCACATCTATTAC-GGATATATGTTTGTCATATGTTCTTATTTTTAGTCGATTATGTGATTTGGTTATTCTTCTATTGAATGTTTTAATCGAAATGAATTTAATTGTTTAcagtctgccctgttcattgggAAACCTTCATTTGAAATTCCTGGCACTAGAGGGAAATCCTTTGAGAACCATTCGAAGAGAAATTATTAATGTAAGGATGTTGAGAATTGAGCTCtgtaattttaaatcaaaattcaaagatggaTGCTGATCTGTAAAACTGTAAGATGTGCCCCGGTGaatgtgtgtctctgtctccatccttTTAGAAAGGAACTCAAGAAGTCCTAAAATATCTACGCAGCAAAATCAAAGGTACTTTTTCTACtttctgctttttctattttccattgtATTTTGAA-GAATACATGAAAGATGATGAAGTGTCAGCTGCTCACATTTCAGTGTAGTGTGAATATGAATGTTTGGAAGGAACA-CCCTTGGCAGTCATGGTTCTAAATTCGGATCCATGCA

a score=16182
s chr3           158055328 515 + 160039680 ttctgcctacttgtatgtatgtgcacatatgcCATCATAGGACTTTACTAT-GTTTCTTTTTTGTTTGTTTGTTTGGTTGGttggtttttcgagacagggtttctctgtatagccctggctgtcccagaactcactctgtaggccaggctggccttgaact--cagaaatccaccttcctctacctcccaagtgctgggattaaaggcatgtgccaccactgcctggctTATTACTATGTTTCTT-----------AAATGATGTCTCTATTATTGGGAATAAAATATATGACTGGGTATT---ATCAGTACTGGCTAGAAATCATGAATACT---TTTATATATCATTACAAATTTAAAGATAGCTGTGTAATTTTAATATTCACTTTATCTAACTTTTCTTTTCCAGATGATAGAACCAATCAAAATGATTCTGTTCCTGAGACT---GCCATGACACTACCAAGTGAAGCCAGAGTCAATATCCATGCCATAGCCACACTAAAGCTGCTAGATTATAGGTATGCAGTGTCtttta
s HiC_scaffold_1 145414866 506 + 233722169 TCTTTCTTACTGGTAAGTCTCTTCATAGGTTT-----TAAAGCTatactgtagaattttttttgtttttaaattttttt--ttgtctttctgagacagggtctcactatgtagttcaggctggccttga-ctcactttgtagcttaggctggtctcgaacttgcagtgatcctcct----------cctgaatgctaggattacaggagtgtgccacta-tgcccagctcat----gTGTTTTTTTATCATTGTCTGAGTGCTATTTGAATTACTGGGAATaaagtatgtttaaatgtattcTTACCATTACTGTCTAGAAATCACAAATACTGTTTTTATATAATACTGAGAATT---GTATGAATGAGTAA-----GTACTGGTTTTATGTAACTTCT-TTCGCCAGATGATGGACCTAGACAGAGTGACTGTGTTCCTGAAACCACAGCTATGACACTACCAAGCGAGTCCAGGGTCAATGTACATGCCATCGTCACACTAAAATTGCTAGACTTCAGGTATGCAATTCACTTTA

a score=15383
s chr3           158058200 1087 + 160039680 AGATTCTAATCCCAAAG---------TAAGGA---CAAGCTACAACGCTCAACAGTGTGGCAGCACCAACAGTGAGTTTAGCCTTTTTCCTACTGCATCTCCTCCACCTCCACATAATAGAAGCACGAGAAGT-AGTGTAGGTGATTACAC---GCATTAACTTAGTACAGTGGTACACCTGCCA----GTCTTCAGTCACCAAAGC--TCACAGATTGCCCACATTTTAAGGAAA-------------GCTT----AGTTATAAAATTAGATTAAGCTCCAAGCACAGGTAGAGAAGTGGACCATGCATT--CTGTGAGTTTCTGGATTTCCCAAGTGCTTCTGTTTCTGTTTCTGCTTCTGAGGATGAACAGAGCGTCCTG--------------ACCTCACAAAACTTCTT-----------------------CAGCTACCTTGAACTTTTTGGTAAAATCTGTAAAAGCCTTCAGATGTGGGGAATGGTGATTACATCTTTTTGGAATGTTGAGAATGTTTTTATTTTTGAACCACTTTT-----AGTGATAAACAAGCAACCTTGATTCCTGATGACCTATTTGATGCCACAAAAACGACCCTCATCACTTCCATCAACTTCAGCAAAAATCAGCTGTGCGAGATTCCACAAAGGTAGGA-------------------TTGT-------CCAGTGATCCACTGTTG-AGCTG-----------------GGCCTTCTGTTTGTTGTGTCTTGACAAATGAATGTTAGTTTCCTGAACTATTAATGTGAG-AGAATGCTGCACACTGT-------GGTTCTACTGTTCTGAGAGATGTACAGGATCTTAAAACTTCCAACCTTACTTTGTGAACTTGGGAAGTGGGTGTTAGAATTATT--AGCTCTAAAATTATTCGTCTTATATAATGCAGTATGGCAGGGAGAGTCTTGAGCAGCCACCCAAGTACCAGACCCACAGTGGATCAGAGGGG--TTTCACTTGCAGGCTCAGGCTAGAGAAACATGA-GTGATTGATTTTTCTCCTTTAGAACTAAAGCCAAAAACATGAACTGCTAGTGTCATCTTCTAGGCAGAGGACCTTCCACTCTAGCCACTAGTTGCTATTTATGTTGTACTTTCTTCTGTTCAGTATGTCATTGTTGGCATTAATTAACAAAATCTTCCAGTTAAAGGAGAAAA-----CTAGTATATTGTTGAACTT
s HiC_scaffold_1 145416827 1187 + 233722169 agattcTGATTTCTAAGACTGAGACTTAGAGAAGTCAAATCGCAAAGCTCACTAGTG--ACAATCTTAGTAAT-AGCTTGGTCTCAGTCC-ACTGCCCTGTCTACTGTTTCACATGGTAAAGGAGAGAGAAATTGGTTCAGGTGACC-CACCTAAAATTAATTTAGTGTGCTGATGAGCTTTTTAAAGTGCTTGTTATGACGTAACCCTTCTTTGAGT-------TTTTAAGGAAAAGCACAAGAAGCAGCTTTTGAAACTACAAGTCTAGGTCAAGTG------GCAGGTAGAGGAGTATGCCGTTTAGTTACACTCAGTGTCTTGGTTTC---ATTTGCACTGGGTTTGTGGGTACTTT---GGGTGGGCACAGCGCACTGCCACTTAGCATGTCATCTTGCACAACTTCACTGTTCTTTATGTAGCATCACAGGCAACTACCTTGAAAACTGTTGTAAAACCTTTGGA--CCTTTAGAAATGAAGACTAGC---TCTGTCTTTATGGATTGCTaagagtatttct-ttttaaaaccatttttcattCAGTGATAAGCAAACAGCTTTGATTCCTGATGAAGTATTCAATGCAGTAAAAAACAATGTCATCACTTCTGTTAACTTCAGCAAGAATCAGCTACATGAAATTCCAAAAAGGTAAGAAGTACTCACCATGCAAGTTTTATGAAGGTGTAAGTGATGCTCAGTTGTATCTGTATTACCTTTGTAAGAAAACTTAGTTTCTGAAGTTAATTTGAAGGTACACATTAAATTTCTAGATTCTTGATATTAGAAGACTGTGACAAAATGTCTGAGACAGTT----TGTCCTAAGAGGTGTAC-GTAGCCTAAAACTGTC--TTTTACGTTGTAAGCTTAGAAAATAGGTATTAgagttattaaaaatattaaattatttttcctgtatagTGACTTGTTAGGGGGA-AGTTTTTAGGGGCTAACCCAATTATAGTTCCAT-GTGTATTaatagaaattttcattttaggcCTTATGTTAATGAATTGCCAGGCCCCTGAATTGTCCCACTGATAAGAAAA---ATGACTATACCCCATTAATATGCTTTTCC---CtgaaaaatttcatttgtaaTCAAGAGAAATCATTTGGATTATATTTAATACTATTGAATATATCTTTGTTGATGTTAATTAGCAAAGTCTCTGGGTtaggaaagaaaatgagtttGGTATATTGTTGAACTT

a score=11990
s chr3           158061194 429 + 160039680 AGTTTTGAG-------TAAGTGCTGATATTT-AAAATTGTTTTTGTTTCAGGATTGTTGAGCTGAAGGAAATGGTGTTGGATATCAACCTCAGTTTTAACAAGCTTTCATTTATATCCCACGAGTTATGCTTGCTTCAGAAATTGACATTTTTAGATTTAAGGTACTTGATAATTCTGTCACTTGACATCTTAAATGTTATGATTCATCTTT---------TGAGTTTTTATGTT----GTATTTTC-TTGGTGAGTATGGAATTTGGTCTTTAGTGTATTA--AGTATATTAGGGGAAATGTAAAATTAACTTATTTAGGCATTTTAACTGTCAATTG--TAAGTAGCTTATAACTTAAGTGGTGAGATAAAA--TTATCTAAAGTATTTTTAATCAATATATATTC----TTTAGATCCTAAGTAAAT---------TGGCAGTTCGTGCATGGAAACTGTTTCCTTC
s HiC_scaffold_1 145418745 453 + 233722169 AGTTCTGAGAGTGAATTTagtgctaatattttaaaattatttttgattcagGATTGTGGAACTGAAGGAGATGGTTTCTGATGTCAATCTCAGTTTCAATAAGCTTTCGTTTGTATCCTTGGAATTATGCATGCTTCAAAAATTGACTTTTTTGGATCTCAGGTAATTATTGTTAGTATtggttggctttttaaaaattgtatcttgTCTTTAACCTTACCTGACTTGTCCTGTTTGTCATGTTTTCATAGGTAGGTGTGGATGCTGGCTTCTCCCTAATTAACAGTATTTGAGGGGAAATCTAAAATTAAGT----------ATTTAGCAGTTACTTGAATAAAATATTCATCATTCGTAAGGATAGTTGAGATGTTATTTAAGATATT-------AACATATACTTTAAATTTAGGCGTAGGCTGAATCAGAGCATATGAGAAATCCTGCTTTCATACTGTTTCCTTC

a score=10967
s chr3           158062531 410 + 160039680 TAAGGAGATCAGATTAATAAGAATTGACAAACATATTTGTGTGTTTTTTATTCTTC----------CTGGGATTTAAACAGTAAAGGTTTTCAAACTTTAAAAAT--TGTGTTTTGATTTTCAACCTAGGAATAATTTTTTAAGTTCTTTGCCTGAAGAGATGTCATCACTGACAAAACTGCAAACGATCAATCTTTCCTTTAACAGG--------------------------------------------------TGAGGAAACATCTGGGAGCCAGATAGATCAGAAGCCTTTATTTTTATCA-TATTTTACTA-GCAGATTTTATTTTCATTTAGATTCTACTTGAATGTAATATTGCTTAGAAATCTCATGATTGGTGCTTAGCTGA---TTTGTTT--GTTTTACCACTGCAAGAAACCCATAGTCTAGAAGAAAGATAAACAT---CTGACTAATTGTGATTGTTGTAGTGGAA
s HiC_scaffold_1 145420418 464 + 233722169 TAATATGATCAGGTTAT---ATATTCACAAACACATCTGTAT-TCTTTTGCTCTTCAAAGTTTTAATTATAAGTAAACTTGTAGAAGTTTTCAAATATTGTGAATCATCTGTTTTTGCTTCTGATTTaggaacaattttttaaattctttgcctGAAGAAATGAAATCATTGGTAAGACTACAGTCGATCAATCTTTCCTTTAATAGGTAAGAGACTGAATACATGCAGTTGTTCTGAGgaagaaatgtatttcttactGAGGAAACAACTAAAAG------AGACAAAAGACCCTGATTTTTGCCCTTATTTCATTgtgcaga-tttattttcttttaaataatac-tgaaagTGATACT-----GGAATCTCACAATTACTATCTAGCagggtttttgtttcctttttaccaTTTTGAGAACCCTGTGGTTTAGTGGAAAGA-AAACATATACAAATCAGTAATCGTTGCTTTAATGGGA

a score=15184
s chr3           158063658 609 + 160039680 AGTTGTTGTGTTCACATTGTAACAGGTTCAAAGTGTTTCCTGAAGTTCTGTATCGAATCTCCACACTGGAAGCGGTTCTGATCAGTAACAATCAGGTTGGCTCTGTGGACCCTCAGAAGATGAAGCTGATGGAAAATCTGAATACTTTAGACCTTCAAAACAATGACCTTTTGCAGATTCCCCCAGAGCTTGGGAACTGTGTGCAGCTACGGTAACTTC-CTTACTGGGGGTT----------CCCAATTGATTTGTTG-ATTGCTTTTTTCTTATAG--GAAATTGAAATAACAGACTTAATA-CCTTCTAACAATAATAGTTAAGCA----AACACCTCATT-TTTCTTTTTAAATTTCACCAGATGTTTTCTGGCATGTATATATCATG-ATGTATGCATAAACACCATTTCTCTT----AGTATTATTCTC-----TGTATATGCTT---ATCCAGAATTGCACTGGGGAGAGGGATT---TCTGAGGTCACACTACAGGGCACCAACTTTGGAAACCCAGT-----------CCTTATGGTCTTTCTCCACTTGCTTCTCCCTCAGCCCTTACCCTGATCTCAGTAGTAACCATC-------TTAGTACCCCCTGGGAAGCCTT-CCTCCTCTTCACACAGAATCCTTGCTACTGTTCT
s HiC_scaffold_1 145422541 653 + 233722169 AGGTGCTCTGTTCATATATGAATAGGTTCAAAGTCTTGCCGGAGGTTCTGTATCATATTCCCACCCTGTCGACGATTCTGATCAGTAACAATCAGGTCGGGGCTCTGGACCCTCAGCAAATGAAGATGATGGAAAACCTGACGACCTTGGACCTGCAAAACAATGACCTTCTACAGGTTCCACCGGAGCTCGGGAACTGTGTGAGCCTTAGGTAACTGCACTGTCTGCTGACTTTTCCATTCGCCTGCTTGGTGTGCTGAAGTGGtattttttcatgatttaatcTGAAAGTTGGAACTTAAAATCCTGTTAAAAGTAAAGTTGACGCAATTCAGAATCCCATTACTGGCTTTCGGGTTTTACCA-AtactttctgctttgtttataTGGTGTTTATGTGTATCTATCCTAATTCTTTCTGGGAGCACTTTTCTCATTGTTCCGTATGTTTATGATCTGAAACT--ACTGTGTAAAAGTGTTGGATCCGAGCTTTGCACACAGGAAA------TTTGAAATCTGATGGCAGGCGTCACCTTGTCATTCCTTTACTTCTGCCCGCCCCTCGGTCTTTACCCTGCTTTCATTGGTCATCAGCCTGCCAGTCAGTCCCCTTTGTGAACACTTGCCCTGTCTCCAAGCAGAAT--TAGATTCTGTTCT

a score=16064
s chr3           158065690 929 + 160039680 CCGTTTGTTCACTCTCTTGCTTAAATCTATTGTATTACCTAGAGTGTG---CTTGTAGCAAATCGAGAGGAg--actcaaatcacagtgccaccattcagcagctgtttattttgaat--gggctt--ttgtctctccagatttgtatttc----tctttaaattagaaatattaatgatacctataccataagTCTTTTTAAACAAAACCTACAGAGTCAGAGACTATAAACACCTTAATGTGA---CTTTCATGTGATAGTTA-GCCAGTGCTGT--------TGGACATTGTCATAATTCTAGCTGTTTGCATGCTTAG--TTGGACTTTTAAAAGACACATAAGAAAATACACACTTTATTTATAAAATTGCAAACAATAGTTTTATTTCATGAAAAGAAAATCACTAATGGGAAATGTTT---GATTTTCCTGTTTCTTCTGTT-TAGGACACTACTGCTAGATGGAAATCCATTCCGAGTTCCTCGAGCGGCCATATTAATGAAAGGCACAGCTGCTGTGCTGGAGTATTTGAGAGATCGAATCCCTGCCTGAGTACCGCTGG---TTTCTTACTCTGG------GCAT-----------------------------GGTCACTCGGGATAGGAC----AGAGCCAG-CCTCCAGTGTCCAGGTGTCACTAGACAGTCACTGTTTGGGCTATGGTCGTTCCTACTAAATG----------------------TCTACAGTTTGTGAAGTGATGTGAACATTTATAATGTCAACTG-----CTACAGATTTTAAATGTTTTATAAATTCATTCCTTTATGACACTGCAAGAACTT-TTCA-TATGAT-------TTTTATAATGAAAAAGCAACCATCTTTGTAAATCTGGGTTCCCCCTGGTATCTTTTCATTTTCCATCTTATATGAACTGAGCAA-------------GACTA----------------TATAAGGTGT-AAAGTCAGCGAACTTTTACTAAATATTATTTTTTGGCATTTAAAAGAAAATCGGACTTTTCGTTGTCCAGGATAGGACTT
s HiC_scaffold_1 145424368 998 + 233722169 CTGTTTGTTCACTC--------------AGTGTATGGCC---ATTGTGAGGTTTGGAGGAGGCCCACAAGAGTGGTTCAAAGCACGGTTCCTCCCT--GGGTGCTGTGTGACATTAGTCAGGGCCTCCTTACCTCCTTCAATTTGTGTCTTCCCGTCTGCGAACTGGGAATGTTAACGGTACCTACATCATAGGGTTGTTAAGACAG----------TTGAgacaatacaaataaatgaatgccATCCCGTTCACATAATAATTACTCCAGTAATATAATTTGGGTTAGCATAGTTATAATTCTAACTGTTTAAATGCTCAGATTtgaa-----aaggggaaaatttaaaaatacagattttacttataaaattgccaagaa-aatttattttcatgaaaa-aaccTCAGTGGTGGAAAATGTCTTCAGCTCTCAACTTCTCTTTTATTGTAGAACATTGCTGCTGGACGGAAATCCATTCCGCGTTCCTCGAGCAGCCGTGTTGGCGAAGGGCACCGCCGCTGTCCTGGAGTACCTGAGGGACCGAATTCCCACTTAG--ACTGTAGGCCCTTCCTGCCTCTGGCCGGCTGCATTCCCAGGAGgatgcactgttttgtttttgggtcaTTCTAAAGGTGACTGCTATAGCTAGCCCTACAGTCCCCGGGTATCATTGGCC----------TGGGCCAGAGTCACTGCCACTAGAGGGGCTTTCCTGACAGCTCATGTCTCCCCAGGCCCTGCTGTGCTGC--ACAGTGTTGGTGTCCACGGGGCGCCCGCAGTGTTCAGTGGCGTTGTGG----TGCCCTCTAAAATTTTGTGAGATTTTGTTCAGTATGATTTAATACTTTTGTAATACAG-------CATTTTTGTAGAattgggttttttcc--tttgttttctttttgtattccaGATAAAGTGACTAATTGTTTTGACTCTGACTAGCCAATTTGTACCTTTTATgagatataaaaatcaa-----ttttactgaatattgttctttgacattttaa--aaaataagactttt-gTTACCCATGGTAAGATTT

a score=97300
s chr3           158066724 4259 + 160039680 [encoded data, 4842 characters]
s HiC_scaffold_1 145425888 4476 + 233722169 [encoded data, 4842 characters]

a score=110820
s chr3           158077114 8631 + 160039680 [encoded data, 9614 characters]
s HiC_scaffold_1 145437530 8599 + 233722169 [encoded data, 9614 characters]

a score=19632
s chr3           158102722 2057 + 160039680 CTTTTACAATTCAAAAATTTATGCAATTAATTTTCTGATCT-GGCAGGAACTTTGTTATTAATATAAATTATGTTTACCC----AATATGAGCTCTATCAATATGATACAAACTGCTTAAAGTTGACATACTAGTTAGACCTTTAAAAAACA--GATTCTTCCTAATGAAGTGGCCAAGAAAAATCTCA-ACTATTT---ATGCCTGTTTTGTTTCCTTGTCCTGACTCAAA-GACCTTCTGCT----TAATAATCTGCCTGTGGAGATGTCTCATCCCAGACAGTGCTATGTCA-----ACATTGCTA-CAGCTCAAATCAGTCCGTGGTCTTTTCAGGCATCTATCACTTTAGAAACTTGAGCAGCTGACAATGATCTTACTAGTTAGTTTAAAACTCTTGTGAGAATAAATTACTACAGCAACCTTGTTCGTTCTTTCAGTATTGGGTTATCTTGGAATTTCTTTTTCTAAGACTTTCTTTGAGTGTTCTGTAGATAGAAGACAGAAGGCCTC-TCATGGCTGAGTGAAGAAAGTCTCTGCATCTTTCTGACTGTTACTAAA--GAGCTAATGTCAACTTTTTTTTTCCCCCAAATGCCATGTC-------ATCTCAGGGTACCTG-----AGGCAAGTGCTAGCAATTTTAGGTAATTCCATCATTTATATAATGGGTAACTT---ATGCTAAATCATTTAACCTTGAGTATACGGGCACCCCTTAAGG-CCTTTCATGTAG-TGCAGGAAATAATTAAACACCTCTTCCATGGGAGTTAAATTTGGGGAGAAGGAAAAAGAA-GTTAAATGGATAAGGTTA---AGGCAAGTGCATGTTTAACTGTTTAATACTGTGGCTCTTTTCTGATTATATGTACAGTTTTAAGTTTGAGAAAATTCTTTCTCCACCTGACATTTAAAAAGCTTAACTTGTATTCTGCACAGGAGAGCAGGCAGACACAACCACGTGTTACAGCCTTCAAATGAAACAAGCTGACTCATGACATGACTCAGTCTTCTTTCTCAGGTAAAGTCACCCAGGTGCCTACCAAGG-----CAACTGTGCTTACTTTTAGTTTATGACCTTAC---AGTTCATGTGTCCACACGTGTACAGATTCTTGTGTTATCACATGATCCCCTTCAATCCAGCAAGAATGTGCAAGGTGCCACCATGTACTGGGATTGTGCTCAGTGAAAGGCAGACACTGAGGCAGACCTTTTTTGTAGGTATGAAATTTGCTAGAAGAGCTATTAAGGCCATAGACAGCAACATAGCAGGGCTTTGA---GGAGAGAACAGGCTCACATGGTAGAGTGAGGGACCTTTCT-----------TACACATTTTAGAAGAAGAGACTGTTTCTATAGGAGGTAACTTAAGGGGAG----------------------TCCATAGTATATGCTTGTTGTTGAGCTGTCT-----CTGATTCCTGGTAGGTAGGAGGTGGGCATGGGGGAGTTTGGTAGCCTGGGGCCTGTATG---CAGAGCCAGCTGTG-------GGGATGGGGAAGGGGAGAATCCGGGAACCAA---ATGCCTTTATTTCAGGAACTGTCGT-------TGT----TGAAGTAAAATGGAGG----AGCTTTACAAAACATC--ATGGCCATGGCTGCAATCAGGATGTATTT-TTTGGCATCTGGGGTTTTAACAATCAGTGGCAAGTAATGA-CACAGGAAGAACCGATTGTCAGTGTTCAGTTCAAGTTCTTTAACCCTAAAGCACCATGTGTGCCTGTTTCGACCTGACATCGAAATGTCAGCTTCTGTTC----ATCTCACCTGAAGGATTTTATCCCCGGGCTGTAGTAGGTTGGATGCTGGTCCATCAGGCTGAACCCTAGTAACAAAGATACCCTATAAGTCAGAAGTGACAGAGGTTAGGAGCTTATCACCAACAAGTAGGTGCACTTAAATACATTTACATTCATATAGAAAACAGTGAAAAGCAGTTTTTAAAAGTCACAGTTTATACAAGTAAGCTCTACAAGGATTATAGTATTTAAAGTAGAACACTGTTCCACAGAGTC------------AAGTCTAATAAAAACCACATGTG-------ATATAAAGATTACCTTGTCTTCATTAAGTACAATTGCAGTTTATATATCAAACTCACAGCCATCAATAGAAATGTCTTTTT
s HiC_scaffold_1 145458557 1975 + 233722169 CTTTTACAATTCATAAAATGAT-CAGTTGAAATTTTGAGCTAGGCAGGAACT-----ATAAACTACAGTTCAATTCACCTGTAAAAAATCAGGCCCATAGCCCTGATGTGAAAGGCTTAGGATCACACAACTAGAGGGGCTATCAGAAAACACAGAATTTCTATAATACAATGGAAAAGAAACACCTCGGATTGTTTTGCATGTCTTTTTTGTTGCAGTGTTCTAGCTCAAAAGACCATCTGCTGCTTTTGTGCTCTGCCTCTGAGGAT---TCAGGCTGGA---TGATATTTCAGGGTGACATTGCTAACAGCTTGGGG-AGCCCATTGTACTTTCGGAGCACCAGCAGTTTTGAAAAACTGATTGCTTGTCAtgattttggtagttaatttaaaatgtttcctagaAAAAGATGTTAACCCAATCTtgctatatgtatgtatatagtgCTAGAAGAGGTCTCTGCTTTCTAGGACTTGCCAAGTAAGTTCAGTAAATAGCTGGTGGCAGACTTCCTCAGCCCTGAGTGGAGAGGTTCTgtgtattcttttcatttttttataattgacctgatg-aagatttttttctcccataTGTACCACACCTGTACCTCTTTCATGATTGCTACAAGTGGCCAAATATCAGCAATTTGAAGTAGTTCTATCTATT-TACAGTGGGAATTTTCCAAGGTCAAAGGAAGGGATCTTAAATACattaacaatatttaaaaacctTTCGCTTAACTGTAGGACAAAATTAAATGCCCATTACATGGGAAGTTAATTCAGAGAGAACGACACCGAAAGCAAAATGGGCAAGATTAGCCAGGCA--------TTTAAATGTGTCCTGGAGTAGCTCTTTTCTGGT---ATGCAGAGGCTTAAATT------AATTTACTCTTGGC------------------------------------------------------------------------AAATGAAA---GCTG-----------GACCTGTTCTTCTCCTTCACATAATGTCAAC-AGGTACCCTGTATGGGTTCTTAATCATTCTTACCTTTATTTAATAACTATGCGTAAGttcatgtgt------gtgtataaattcTT------------------CTT-----------ACATATGTATGGTT------TGGACTGCGAATGTGCTCA--------TAGACAGTG-------CCTTT-------GGAAGATGACTGACCCAAGGGCAATGCAGTAGACCTGCAGTAA-GGAGCTGGGGTCGGGTTGGGAGAGATGAGGT---CGTGACCCAG--AAGGACTTCTCTGCCTCCCCGACTCcgccctttt----------ctctctgcttctggacTGCCATGATGTGAGCTGCTCTCTTCCGCCAGCCCCTTCCACCACGCCTGCCTTCCCcggagccagctgaccacggact----gtaact-----gtgagctaaaacaaaTTTCTACTCTTTTAAGTTGTGAGTACCGGGGACAACTGTGTATCTCAGTGACCAGAGAGAGGCTAAGACAGTTACTAAGTAATTCATTCAATTCAAAGAATGCTGCAGAACACTGTCCTGTGCTGGGTACTGGGTGTGTCAGCTGCTGGGGACATTGAATTCTACTGGATTGAATTGTGTCTGATTTGTCTGTCAACCCCAG----AACAATCAA-GGCAAACAAGAAACGTGACAAGGACTTATCCTTGGTCATTAACTCAAACCACTTAGCTT-----CATCACATGGAGACACATTTGCCTGAGAGCAAGAATTCACATGCAGTGCTGTAGCCTTACCTGGAGAATCTTGTCGCCAGGCTGTAGTAGGTTGGATGCCGGCCCATCAGGCTGTACCCTAGTAACAAAGATACCCTATAAGTCAGAAGTGACAGAGGTTAGGGTTCAGTTACCAACAACCGGGGCTAATTCAATAAATCTTCATTCACATAGAACACAGTGAGCA-CAGATTTTA-----CCAAGTTTAAGCATGCCGGCTTTAAAATTACCACAGTATTTTAAGTCAGGTGCCACCCTTC-GAGCCAACATGTTTGGAAAGTTTAAGAAAACCAACATGTTTGCCTGCACAGAAAG-----CATGTCTTTA-AAAGTCAAATTGGA-TTTATAGATTGATCTCATGG-CATTCATAaaaattccttcct

a score=27592
s chr3           158105448 3221 + 160039680 CCACTGGATCTCTGGCTGCTGAG-GTGAAG----TTTCAGCCCTTACGTCACCCCATCTGCCAGTGACT--GCCACTCAGCTGATCCTGATCACCCCTCTTCAGCTCACCATCTCACCATGCAGAGACAGTTTAATGAGGTTTGCATAAATCCAAACCATAGGAGGCTAAATTACACAGTCATATCCACATATCCACAATACCAGAGACCTCAGTGCAGAGCCTGGCTGCTTAGACAACATGAAGGTGACATCTGTGGCATGCTTAATTTCAGTAGTAGCATCGTGGTTACAGGATTTGATTACTG----TGGACCCGCCCT---AAAGCTGACTTTTATGGTGGCCTGAGCTTTCTAAAGT------------------------CATTATTTCCTTTTTTTCTAAAGTTTGTTTTTTTTTTTTCCAGTCAATA------------------------------------------------------------------------AATTTCACAAGCTAAGATGCTTCTATTTCT----------------------------GTAACTCCCTCATCTCTCTGT-------TCTTTCTCAGCATACAGCCACACTAGTGAAGCCAGAGAG-CAGTGAGGGTGCCCTGTGATCCCGGCC--------TTGTTATTTGTGTA-------TTGTTCCCCAAAGACTGCCTCAGGGTATAGGGCCAAGATGTTCCATTTTATATGTA-ATGTAAAGATACTTCT-TTGGAAAAAAATTTCACCTAAGTCCAAGCCAATCTG--AGTCTCTAAGAC-AGGGATTGATTAGAGATG--AAAATTATCACA--------------------------ACA------TCTTTCAATAGTTCACTTCATTCTGAGACTTGAAAGAATATTTTGACATTGGAGACAGAATTTGGTAGAGAATCATCAAATTTTTTTGGTATTAAAAATGTAGATGAATAACATTCTTTCTGGTAAAAAAAAAAG------------TTTCTTTTAAA------------TTTCTGGGACAACAGGAAGCCACCTGGTTGA--------------------TTGGAGGATCTAGGCATGCTCAG-ATCCTGACATGTGAC---ACAATGTGAAATGTGTTGCAAGCTATCAAACAATACATCAGAAAGTACACTAATATCCAACTATCTAAAGTTAC-AGCCAAGCCATCTCACCCCAAAAGGTATTCTCTCCTTTGCACATCTCTCTCACATCGAACACTCtgtatttgaccttttactgcagcgataacacatcaccatagatttagtgacttaaaacaccaccatgcttatcatctcat--------ggtgttg----gagtccagaccctgctgtcatggtgccaaagcaaaggct---ctggcagagctgtgtggtcctcctgtggaggac--------tcacttttccatcctttctagatcagcttctagagatgtgcaga-ttcttggatgatgaccttcttgtttgtctcaaaga-tagca-tggaccatctctgtgaccact-------------tctccctttcaccagagccagaggagttttcccacctccaagaac------------ccttctggataatctagagtaatctc----aaggttcttagcct--tcacat------attcctgtttactatgtaatgtgctataatcatgggttctggaaattaggatgtgggcacatttggggaatcatattttctatctggtacaCT-----GCAGCCATAGCCAACACATTTCTGGAGTTAGTCT-TCCTTGTGTAACATTTATAAACT-GGCAAGTATACTTTTATTTATATAATGTTTCTTCATTAGTAAAATGTATATAA----AATGGCAAATAAAAGAAAGCTGTCTTAGGTGGGCAGATGCATATAGAATATC--TGGACAGTAGATAATCCCATAGATGATCAATAACCAATGTTATGAATTTT-------GAAGGTCCTAAGGTTGAGCTACATCTGAACATCTTATATCCAGAAAATCCCACAATTAGAGT--------------GTTTCTAGATTCACTGGCTAGCAGTTAT-------TCCTCTCTGT---GAGTATATTA-AAGGCCAGCATTTGTCATTTTAATTTGAATCTGACAGGCAATGGGATTATTAGCTTCTCCACATTGG---------AAAAGAGTTCTGGGAAGTTCTTCCTGCCTCAGCTGTGGACTCCTTGTGGTGGCTCATGGTGAAAGTGGCTCTAA-------------TCATTGGCCACTGGCCATACACAACCTG---GGTTCCATCTGGGGAGCTTTCCAGCAGTTATTAATG--------ACTTCTGGGAGCTCTT-CCCATGATTGTTACAACACAGCATTATCAGCTTTCCA----TATGGCTGACAGAATCTGATCT-------AGTTTATGGCATCTCTGACTACGTTTGTCAAATGTCTCTTACTTCATGGTTACTTCTGTGGTTCTTTAGTGACTCAA-ACAAATGGTTTTACTTGGTAGCTCTCCTAGATGCTGTCTCATATCAGAGCAACATCTTGGCTGCT----ATAAAGTTTTATTTCCAAAGACTGAATCCTTGGTCTCTGTAGATACTAACATTGGGGTGTATGTGACATTGACTTAGATCTCACAGAACCATGCATC----AGAGACCACTATAGATTTTTAACATTGCTAATCCAGATAGGGCTAGCTGGCTGCTCCATGT-GACATGTTCTGTTGCTACATAGTTTTAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatctgcatgtgggaagtgtgtgtgACtgtaagtgctctcagaggtcaggagca--tcagatcttcctggagctagagttacaaagtgactatgagctacctgagttggatgttaggaaatgaacttgttaaaagcagtatgtggtgttaatcactaattcacctttccacccccTATATTTCTGCCTTGTATTAAAATTTGTCTATTTGTAAGTTCTATGACTCTTCAAGAGGCATTCACAATGAACAGGCTCATGAAAGCCTTTGCTTTTGACAAGTCCTTTCGCAAAATTGTGAGTT---GAGATTTCTTAGTG--TTGAGATCTGACCTCTT----CTGGTTTTCTACCCTCAGCATCTCTGAATACAGACCAAGGACTCAGCAAGTTAAGCCTGCAAGGCCAGCACTT-CACATTCCAACTTTAGAGGAGATCAGAACTTTATGTGTTTTTT-TTTTTTTTAATGATGAAGGTGAGTGACTGTGACAGTCTCAGCTATTGT-CAACGTAGACACAAAAATAGAACTACTCTTAAGGGACCTGCGACCACAGTGCataaaatatattttta--aaaaattCTCCAAAGTGTTATTTCTAGTCACAGCTTGGAAAATGGTTTCTAGGAAGGCCATATCTCAAGTAAAATTATAT-CTGTTACAATTCATAGCACATCACATGCTTTAGAATACAGCGCTTCATGTATTCCTGTAAGTACGAAAGTTCAAAGAAGTTTTCCAGAGGGAAAA-TGACTCATTAAAATAGCAAACAGAGC
s HiC_scaffold_1 145464768 3220 + 233722169 CCCCTGCATCT-TGGTTGCTGAGAGTGAAGCTGTTTTGACTCCAGCTTTCATCCTAGCAGTCAGCGTCTCGGCTACTCCGTCAATTCTGATGGCCTTCCGTCAGTTCGTTCT--------GTGGGAAAGGTTTGATCTGGTTTGTAGGAATCTGGCCTGGGG------------------------CAC---TCCACAAG----------------------CTGACTGCTGAAAAAACACAACCCAGGCGTACGTGGCAGGTTTAATTTTATCCGTCATGTGATG-CTGCAGGATTCAACCACTTGTTTTAGAGCCTTGCTTTCAAGGTTTATTTTCATGGTGGTCTGAATCTTCCAAAGCACCGATTGACTTTTTTCCCtaaagctttatttctttttttctt----tttctttttttttttttttgtcattttcgtttttatcggtaccagggatcgaactcatgactgcctgcttgcaaggcaggcgcttatgccgctgagctaaatccccaggcccaaaaGCTT-TATATCTTTTAAGTCAGAAAATCCACTAAGAAACGGCTACTGCCCATTCTCTCTGTCTTGGCCTATTGGCCAGCGTTTTGTCATGTTGGTGGACCCAGACAGTCAGAAAGGGCTTTGTTTGATAATGGTCCCTGGTGTTCATTATTTGTGGAGGTGAAACATTTCCCAAAAGACT-CATAACAGGCCAGCCCTCGAGTGT--CATGTTGTGATTATGTCTAAAGATGTTGCCATTGGAAAGAAAC--CAACTGAATCTGAGTCTGTTTTGTATTCTCTGTTATGATGAAGCGATGAGAAATGTACAAACTCTGACACTGCTCTGAATAAGTTCATCGTGGTGACAGGTCACCCTTTCAACAGCACATTTTATTCCAAGAATTCAAAGAATGCTTCGGTGCTGATGGCAGAACCCGGTAGGGGATCAGCATACACGCTTTGTATTCTGAATAT---TAGAAAACAAACTTCCTACTTACAGTGACTGGCtgcctcttcatttcttttcaaacCCGAGTCTGCCTTGTGGGA-ATCAAAGAACCAAATGGTGGCATCTTATCAACCATACAACTTTGCAAGATCCAAG---ACTGAGTGTCTTAACAATAGTCAGTAGAGGGCCAAATGTG-GGCAGATTATCAGCCATGACATTCGAGCCTACTGAAACAACTTATTA-CTAAGGTTATGAAGCAAATCATCTGgtggaaggaagaa---------gggaaaaaccTCATTAC--------CTCTG---------TTTTCCAGAAATG-TAACAAACTACCACAG---TAGTAGCTTAGGTTACCATGA-GCTTATGATCTTAGCTAGAATAGATCTTGGCTAGAATTCCAACATGAGTCTTACTGGGCTGAAACAGACGTTGGCATGGCaggattgttttatttaaatcttcAGGACGGGCTATTTCCCTTggcctttttttc--------ctcctgggAATGCCCACATTTCTTAGTTCATGGTCCCCT--TCTGACTACTAGACTGGCAGTGGTACAGCTCTCTGGCCACTTGTGGTTGTCACATCTCTCTGTGACCACAGTCAGGAAAGAGTCTCAGCCTCTATCAGCGATTCCGCTGAGCCCCCTGAAT-TTCTGGGGTAATCTCATCTAAGGTTCTTAGCTTCATGACATTTGCTAAGTCCCTTTTGCTCTGTAAGGT--CATATTCATAGGTCCTGATCATTTGGATATGGTTGTGTCTGGGAGCCACTGTTTTCTGTCTAATACACTGAGGAGCAGAGGTGAGGGCCATAGCACTAGGGTTGTCCTGTTGGTATTTACCATGTACAACCTGGGCTGGTTAACTTCTGGGTACACACT-TCCCCCTGTTAGTAAAATGGATacgatcctggtaccaaat-----tgAGCAGTTGTAGGTGA--------ATATGGCATCACAGCGGATGGCAGTTG-----GCAAAGGGTCAGTACCTTTTCTTGTGGTGACTGGTGACCGAAAGTCTGAAAATCCAGCTCTGATCCAAGGTCTTATATCCAGCAAAGCTCACACTGAGAGCCAGTGAGTCGCCAGCTGTCTGAGATCATGGGTGGAAAATAATTCTGCTGTCTTCTCTGTCTGGAGTAGACAGTAAGGCCAGCCTTTGCCACCTT--CCTGACTTCCCCATGGAAGGAGATCAGTGTCTCTT--ATTTtgggaggagacagaaaaagggCTGGAAAGTCCCACACGCCTCA--CATGGTTTCCTTCGGGTGGCTCAGGATGACAATGTCTTTAATTGCCTTTCACACTCATTCACTCTTGTCCTAATACGATTTGAATGATTCAAACAGTGGGACTTTCCAGAGGTCCTGAATACCTTTCACACCTTTTGAGGCTCCTGCCTTTGGTAGCTCCAAGTGAGAAGCATCAGCTCTTGGAAGTCACAGCTGCCAGAATCTATTCTAGTCAGCAGTCTGTGGCCTTTCTGAGAGGACTTTTCCAGTGTCACTCATCTCCTGAGTAATTCTGT--TTCCTTGCTGCGTGAAGAGCAGTGGCTGCACTCACTACTCAGTCTCTAGGCTTCTTCCCAACACAGCCTTGTGGTTGGTGCTGAGCGCAAGTCTCTGCTTCCCCAAAC------------------AGCAGCAACCACAGAGCTGT-TGAGACACTGTC------CCCATGGGCTCGTGTGTCATGGAAGGACCCCCGTGGGTGTGGAGCAGGGTGATCCAGGACACAGCTGGCTGGGTGCTCCACGTAGCCATGTCC---------------------------------------------------------------------------------------------------------------CCAGTACCACCTCAGATTCTCC-------------------------------------------------------------------------------------------CCCACCTT-----------------------------AAACCAGTCTTTATGCAGGTCCTACATGACTTCCAAAACTAGCCACAATG----GGCTCATAAAAAAC-TTGCTTTCCACACCTAACTTAGGAAAAGGGTGAGTCCAGAAGACTTCTCAAAACCTTAAGATCTAATCTTGTCTTACTGGCTGTGTAGCCTC--------------CAAACCTGAGGCTCAGAAAGTTAC-TCTCCAAGGATGGCGCTTAAACAttctgactttggagaag---agaactttgtattttttttcccttttttaatgaCGATGGTGAATGACTGTGACAGCCTCAGCTATTGTGCAGCGTAGACACCAAGACAGAACTTATCTCAAGGGATCTGCAACTTCAATTTATGAAatatgcttttctttaaaattctgaagAGCCTTAGCTCAAACTGATGCCAAGCAACTGGCTTCTAGGAGGCCTGTATCCC-AGTTAAATTCTATGCTGTTACAATTTGGAAAAAATTGAATATTGTAGAATATGGTATTTCATG--CTTATATGACTATAAAAGGTCCAAAAGGGTTTCTAGAGGAAAAACTGACCCATGAAAATAGCAAATAGAGC

a score=35949
s chr3           158120120 2529 + 160039680 gagagaaagagaAAATGAATAATCCTTCAGCACTTTTGGTGTTATTGTCAATGT-------CTCTGGTATGGTGTCCTGGGGCAAAGGTGTCCAACAAACAAATGCCT-GCTTCTGAGT--CTAACCACCTTTCTCTTCTTAATACTGGCCTTATGAAAACCTTAACTCAAGATAATACCTCCCCCtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctTTcacacacacacacacacacacacacacacacacacacacacacacacacacaGCCTTACTCATTCAGGAGTGGAAGGCAGGGTAGGAAGGGTTTGGGTCCTGTTGCAGCTCATCTGAACATGTAGAGGCAA-GATTCAAAAATGATTT--------GATGATAGCCCTGAGGCTATATGACATTTATTTAAAGT-TCATGAC-----TGTTTTACAT-TTTCCAACATTCTTCCCAGGGCTTGGAATTTTTTGT-TACCTTAGACAAACCAACCAACCAACAAACAAACATGGACTCTTCTCTCTCATCATGT------------TCATATTTCCCCA---GGTGGAAAAATGGCTGAGCTCCATGGTGTT-------------------------------GCCCTAGCTTGTGCATTGGAT-------AAACTATGGAGTGTTAAGTGGCTCCCTGCTTTCCCCACAGCTGTCTCCTGCTGTAAGACCC-ATG--TGGATAGT---------CTAGGTCCATAACAAAGCTTT----------------------CCTGTGAGTCTTATCAGATGTTATAGCAAGTCTCCTTGACAAAGCTTTAAATTCTAGGCAGT---TAGTCGTTTTCTCAAATGGAGCTAGGAAGGATGTTAGTCCCTGGATGATGAGCTTTGAATGTTTCATTAGGAGCTCTTCCATTCAGAGGATCTTGCGTTGATTTATGAAATATTG----CACAGTCTGGTGTCATTCTGTTACTTTGCTTTTCTCTTTTTCCATGGAACTCACCAGTGGGAAATTCCTTGG------------ATTTTGCAACCACAAATTA-------GTGTGTGTTTTAATAGATAGCATAGTGAATTTGCTTCGTT-----------GCCACTGCGATGACGATACCTCAGCCCGCAAGTTACATAATTGATTATCA-ATACTCCCTGTACTAAACTCCCTGATTACTGAGGTTCAATGGAGGAGGCGTGCTGATTTCCACTGGTTTGTTGAAGCAAATATGAGGATTTTGAGTAATTAAGGCTCTCTATAATATGTTCAAAATTAGAAAAATCATATGTGTCTCAGCATCACAGGGTGTGAGCTTGTCATGAG----CTCTGCTAAGTGGCATCTGCAGACAGAGGCC--TATGTAAGAACTCATTaaaagaaaaagatttggagccagatcaatttggtttcagattttgcctgtcatagattagctaaatgaccttggtcatgttaatgaaccatgctgggactcagtcacatgtcaattacaatactatctgactaatagatgttgctaagatgatcacatgatgttacacatggaataagcttcatacaatgcctggcacat----gataaTTAA--------TGCCATTTTTCCTGCCTTATCATTAGATTTACTTGGTTGAAATATTTC-ATTTAAGTGGCATTTTATTACTGTGACAGCAGTGTTTATCTCTGATGAAAAGCTGGATTACAGCTTCTATCCTCTTTACTGAGATGGCAGAGGTGGACATCATAAAGAGCTGTTTGGACTCTGTGTTCTACCACTTTCTCCTCACAAGTTCATATAAGCAGTTT-------ACACTTTGTGAGG-----------TTCTTG---------------------------TCCAAAATAGTGATCTTTTTGTTAAATAAGTT-GTTTTTCCCATAAACTACACAATGTTTTGACAGTGT------------------CATGCTGATTCCTTGACCCTGAGAGAACACATTTCCTCAGGACCACCTTGGGTCTTGTAGGAAAGTTAACTTAGCTTCAAATGCTG-CTCCAGATATGCCAGTCCTGCATGAAATGGCCTGTCAGTCATGTGAGACTTAATCGCAAACCCAT-CTGAAGCCTCAGCAAACTTCTTGACTTGTCTGAGGTGATTTACTGCA-GGAATCTCACACAACCCAGAACAGATGGCAAATTTTGTGCCCTAAGCAATGTAGCTCCTCCTTTTTGCCCAATATGCACTC--CCTTCCCCAGTTTAGG-GACTACTATATGCTTTCCCTGCTTGTTACCAGTGTGGGTATTCTCCTATACCCATCTGCCCTTGGGATTT-GCTGCAACAG-------CATCAATAATATCGAGTAGGATGAGATACATTTTGCGATAACTATAGCATAGAAACTTCCAAGTGCTTTCGGGACATG-AGATGGTCAAGG---------ATTCTCAGCAGCCAAG---------------AGACAGCAAGTTTAGCAGCACATTGTGTGTCCAGGAACATA--GCTAATGTCTGATTTGTTCACGGGAAGGGAACAGGCATTACCCTGCAG-ATTAGAGTTTCTAGGACATG---------------TCTTCTTCAGACTCAGGTATTATCTGTTGAATTTAATTG-CCACTTAATTTGCTACATTTCACCTCCAGCTGTGAATTAGTCCACTCATGAAAAGGTAATTTCTTTTTTAACATTGAAGAAAATAGTATACTAGTGTATCTTCATATACTTACTGTTCAT--TTTTGAGGATAGGTATA
s HiC_scaffold_1 145477047 2597 + 233722169 GAGGAAAACTGAGAA---ATTATTCTTGTGCACTTTTGAACTTGCAGTTGGCATGAATGCACTGTGCACTGGTAGGCCTGGATAAAG----CTATCAGACAAATGCTTTGATTCTGCATTTCTAGCTATCCTCCCCTCTTTAATATTAatcacacaaaaatatttatttgatgcAGTCCCCA----------------------TGTCTGCCCAATGTTCTATTTTTCCCTCA-----------------------------------------------------------------GGGTGGATGGTGAAAT--GAGGACTTTAAATCTTGTTGCAGGTCATTTGGAGATCTAGAGGCAACAATTTAAACATAATGTCAATAAGTTATAATAATTATGAAATTGTAGCACATTGATTTCAAGTGTGTTGACGATTATATTTTCCATACTTCCAATATTCATTCTGTGGCTTGGAATTCTGCCTGTGCCCGAGGCAAATtaatgcatttgaaaaggaaCA--GGCGTATTTCTCCTGTCACTTCTGTGGTGACAGTCAGATTGCCCCGCCTGGTGGAGATATGGATGAGCTCTCTGGCGTTTATGATACTTAGGAAAATAAGGGATTTGGTAGCCCCAGTGTATGCATTTTCTGCTCTCAAGTCCTTTGAGGGTGGGGTGGATCCATTGT-----AACAACT------TGCAATGGGATTCGATGACTGGATAGTTACTCATGGCAATGTGTAGGGCAATACTTTTTGCAGCCTTTGGGGGAAAAGGCCTATGAGTCTTCATTAATGC-----------------------CTTTAAACTCTAGGCACTGACTGCTCCTTTCCTCAAATGGAGCAAGGAAAGATATTAGCCTGCGAATGATGAGCTGTGAACGCATCATTAGAAGTTCTTTCACTTGCAGTGTTCTGAGCTGCTTTATGGAACACTGTGGCTGCACCGTGCCGTCA-TCTATCAGtctagttttttcatttttaacaacaT---CCTGTAGAAGCGATCTTGGTCCAACCTCGCAATTTTGAAGCCTTACGTTGTTCAGTTATGGGCAGTTAAATATAAAGGGTACTG----TGGCCCGTTCCATCAGCAGCGTCACTCCTGTGATGACACCTTAGCCCATGAGCTATgaaactgtttgcagtctactCCGTTCAGCAGGCT-TCTAATTATCCTGGTTTGAT-AACAACACACGCGGACTCCCAAGGACTTATTAAAGCAAATATGGAGACTATGACTAATTAGAGGGCCCTGTGATACTTTAGATATT-GGGACATCATCTTCATCTCAGCTCTCCAGGGTGTAAATTTGTCGTGTGGATCTTCTGTCAAGGGGCATTTGTGGATAGAGACACGTACGATAGTGCTTATTAAAAGAGAAGGATTTAGAGTCAGATTAGTTTGGTTTCAAATCTTGTTTGCTACAGATCAGCTAAATAACCTTGGGGAAGTTAATTAACCCCTCTGGGG--------------AATAATAACATTACTCAGCTAACAGAAGTTGCTATGAAGATGACATAAGTCCACGCACATGAAGAGCCTAATACAGAGCCCAGAACACTGCAGATAATAAAAAAAAGGCTGttatttttactactttattATCACAGTTATTGGAACCGATTCCTTCTCTCTCAGCAGCATCTTGCTACTCTGGCAGCAATGCTTCTCTACAGAAATAAATGTGATCATGGCTTTGACCCACAATATCGAGAGGGCAGAGGCAAGCATTGGACAGGGACATTGCTAGGCAGTGTCGT-CTGCTTCCTCTTTCCAAGTACGCAGAAGCAGTTTTGGTGACGAGTTTTATggtgatttgttgtttttcttggtaccgggaatcaaacttgtGATGAGCTTCAAAACAG-GAGCTCCATACTGAGTGAGTTGGTTGCTTTTAACTATTGCATGTTGGTTTGACAGCATTAACTCTAGGGCTCATTGTATGGTGTTCCTTTAACCC---AAGAA---------TTAAGACCACC-TGGGTTCTGGAGAGGAGTTAGCCTTACTACGGATGCTGTTTTCAAATGCTAAAGTCTTGA--GCAATAGCT-----GTCATTTAGGACTTCATCCTTAACCTTTCCTGAAGCCACAGTAAGCTTCTGGG-TGGTCTCAGG-ACTCTTCTGCATTAAATCGCACACCGTCC------------------TGTCCCAGAGCTTAGACAGCT-CTCTGTATTGTGCAGCCTCTGCTCAGCCTTT----GCTGAGGTGACAATCTCAGGCGTGCACAAGCTGTCATCAGCTTGCATGCTCTTTCAT----ATTGGTTCTCGGCATCTGGATGAAACAGTGGTTGCCATCCACAAT----AAGAGTACAAACCAAGTTTC-------------TGTAGAAAGTTCTCCATGCCTCTAAGATATTCAGATGTTCTTGGGTACTTAAAATTTTGAGTAGCAAAATATTCAAGCACTTATGATCATTAAGTGGGATAACAAAGTGTGCTTCTGAGAAGAGAGCGCTAATTCAGGGTTTGTTAAGTGGGAGAGAATGTGTTTGGTATTGTAGTTTTAGCTTTTGCATGACTTGACTTTTTGTAGAGCTTCTGTTTCAGACTTAGGCAGGATCTGTTGAATTTAAACATCTGTTTAATTTGGTTCCTCATGCCTTGAGCTG-AAGTTAGTCAACTCATAAAAAGTCTAATCTGTTTTGAATACTGGAAAGAGGGGTAT-TTAGctaattttcagtttcttactgtTTGGTATTTTGGAGGTAGATACA

a score=13777
s chr3           158123038 480 + 160039680 caagcccTGCGTTTTATTCTAAA--TCATATAGAACCTTTATCAGTGTGGAACACGAGGCTGAGGAAGTGAAACTGGGTTATGTAGACATGAAACCCTCCCTCAATGAACAGACTAAATTTTTCTGTAAATTATTGGAGTCAAGGTCTTTATATCATTTGTTAC-----TCAAGACTCCATCAGAAGTTTGGATTGCCAAGGAAAGTATTTCTAACTTGAACAATGTTCTG---------TAGA-GCTGAAATTCTGGTTACTTCCATCCATTTTGCAATAACAGGGAAACATGATTTAGGCTGTAAAGTGGGTTGGAGTGTAATCAGGC--AGAGAAATGTACTTTCAAGGAAGGATCTTTCAACAGCTGCATCAAACAATTCAGACTCTCTATCTGCTACATTTAGCCCAAAGAGCAAACTATATGATCACAGACACAGTTAAGTCTCAGTACGGTCACCCAA-----ACAAATGATAAATTAGTGC-----TTATAAGGTGTTCAT
s HiC_scaffold_1 145479642 504 + 233722169 CAGGCACTGGATTTTATGCTAAAGTTTATGTAACAACTATAACAATGAAGCAC-CAAGGCAAAAGAAATGCAACTGAATTTCTAAGACATTAGTTCCTTTCTTTGAGAGCTGATTAAATTCCCATGTGAACTATCAGGGCTGAAGTTTTCAGATCCCTGGACACCATAATCAAGGGCCTACCATGTGCCTGGCATGCTAGGAACGTGGTCAGTACATTGAGCAGTACTGTGATTCTTTCATAGATGTGGAAATTCTGGTGATTCTCATCAATTTTACAATAATAGAGATTTACTTTTCACATTGTGAAGTGCTTCAGAGTGTAATCAGCCAAAGAAAAAAGTGCTTTTCAGGAA--ATCTTTCAATGGACCTATTATTCAATTCAAGCTCGATGTCTACTACATTTAACCAAAAGAGTAAATTATAAGAT--CGGACATAGTTCAGTCTCACTAGACTCATTGAAATGTTACAAATGATAAATTAAAGTAATAGTTAGAAATTGTTCGT

a score=25893
s chr3           158126408 2566 + 160039680 AGTTTGGTGAGATCAAAGGTAGATCACT------GTAATTGTGTGAATTTATTTGCACT-GATTTCAGTATGAGATTGTTAAGCATTAATGGTAGCAGAGTAGGCT--------CAGGGTAGA-------------------AAATTAGACTGTCCACCCTGGAGTCAGACTGGCCTGCT------GTGGCCT-------------------------GAAGAGAGCAAGGAGGCTACATATTTATCCAATG----------------------AGATGAGGATCTGGTTCCTCTGCTAATGTTAACTTCAATTTTCTTGTAAAATTTATTTTCTGTGATTTCTCATTTCCAAAATTCTGTTAACGAAACCCTTTGCAAGTCTGGTGGATTGA-GGTCAGCTgctggcctgaaaacccagtcaaggtgggatcattttgttgctataagaaaacatttttctaagtaacaaatgaatactttacaaataaatctttggaa--AAATTCTTATAAATTGCTTACATAGATTTCTTCACCACATA--CAAGTGTAAAGTCAAAATAAATAGGCAAacactcacacacacacacacacacacacacacacacacacacacacacacacaAACTCCATGGAAACTAATCATGAGAATACTTTCAAAACCCATTTCTTTTCAAATAGAAAGATTAAAAGTTTGTTTCTCCTGCTCTGTTTTCTTCAAGCACTATGTGAGGTTCATTTTTCCCTGTACAGACTCGTTTCAGCTTCTGTCTGGCTTCATGGTTAGCTAGATCAACTCAGCTCAGCAAACATA------------CCCACAAGC------------------------------TTCCTTTTACCATTG-CATCACAGTGGGA--GATAACATTTGAAACTAAGACTGTCAATAAGGAATTCACTTCTTACCTTGTCAGAAGGTTTGAAAGGATTTCCTTGCCCACTAATTCCACCGCTGATACTAAATCCAAGCCCAGGATTCTTTTCTATCCTCACACAGAACTAAGAAAAAAAAAACACACACACAAAAAGTCACCAACTAGCCATTACAACTAAATATTTTCCAACAAGGTTTGC-----------AATTCACTCATGTTTCATAGTGAGCCCGTGTTGATCTAGTGTAAACAA-------CACAAACTCCATTAAAGGGGTAATGTCTCTCTATGCCTCTATATGTCAGAAAGTGGCTTTAGATGTCCAGTATACCTCAGGA-------GCTTACTG-------------------GGCAGTATCTG-----TCATTCTATACACATG-------------------TCCAGGCTACTTA----GAAAAGACT--GTACAGACAAGCGAGACAAAGCAGAGATAGAAATTTAAATATGGTCGTGAAGGACACCTTTGGAAGGCC-TGGTAGCATTTAGGGATGTTAGGGCTTTTAGTTTGAGAAAGGATCCACAAATAGGGGATTGAAATGAAAGTGAAGCCCTGGGG---GAAAAAGGAATTGAGTTTTGTAGCAGTTGCTGAGATGAGAGAGGGAAGAATAGA-------GGGAAAACATTATAG---TCATGAGGTTAGAGAGTGTGGTCCATGAGACAGAGACTGGGCAGGAACAGTGCCCAGGGCTG----TGGAGAATTTGGTCTAGTACTATGCTGTTATTTTCTTAGGTATCAGAC--AGTTTTAGATGGATGCCTACTGTTGGCAGAGGCTGCAATTCAGTGGAACGGGTGTTTATGTTAATGTAGGCTGTGGATGGAACATCTGCAGACAGGAAGCTAGCAGGATGACATCCAGAAACCTCAACAGATGAGGGCATCTGGGTGATCCTGAG--CTGAGGGTGAGTTGCTAGTGAAGGAAAATACTGGCTTTGAATATAGGGTGGGGCAGGGTGATCCCAGAT----GATGGCAGCCTTGTGACTAAGAGGCAGCATTCTGTTGTTAAATGAAGAGAAAGGAGATTCATAAATGATAGGTACAGA----GCAAGCAGGGGAGCC--CTGTGGTACCAGATGGC--AGCAGTG-AGGTGA--CTGACAGGTCAAGGAAAAAAAAACGGTGGGGTACACACTGGCAAGAGCTTTGTAATTAAATAAACACACAGAAGAAA---------------AGTTCTTAAAGAT----------GATTGAACGACTGGCTGATTAAGCAACTTTATGCCTCTGGCTAGCACTCACTCACCCTCTTAACCTGTTAAACTCCAATGCCAAAGCACTCTATCTTTCTATTTTAAACACGTCTCTAGTCTCTCTTCTTAGATGGTTTAAGATAAACACGAATCACATTTCATACTTAATTAAGATGT-ATTCTAGGTACCAGACTTTGGATGAACTAA----TCCTACTCAGAGGCACCGGCCTTAGTATACTTACTGTTCTTGTTCCT-------AAAATGACATCTGACCGGCTTGTGGTTCTTTTGTAGCACAAGGGAAAAAAAAATCTTCCACTAATGTGATTTCTATTTTCAACTCATCAGCCAGTAATTTCTAAATTATAAGTAAGCACA-ATTGCAAGGAACACTTTTTCATA-TTTCACTTTAAAGATACACTTAATTGCAACTTCTCCTTCAAGTGATCTAGATTTGTTAAAGCTAGTTTTTATAGGGTAGCAAAAAT--TAGCTTATAATGGTTTATAATTTACATGACTCAAAACCTATGAGCATGAAGATAAAACAGTTTGATGTAGCTGGAGGGAATA-CTTAGCTGTATTTTATGTAGCACTTTCCCTCCTTACTACTATTTATTAACTAGAAAATGACAGAAAAACA
s HiC_scaffold_1 145481643 2510 + 233722169 aatttgatgAAGTAAAAAGTAGATCATTTACATTATCATTATGTTA--TAATTTCTAATAGATTTAAATCAGGGAC----AAACACTGTTGGTAGCAGGGCAGGTTGTATAGATCAGGGTAaattttttgccttatttttaaaagtcagacaaTCCACACTGGAACCCAGCAGGCCGCCTTGAACAGGGGCCTCATGTTGGACGCCCAGGCAGTGGTTGAGGTGAGAGTTGGGGGTGCCT--TTCTCCCATGCTTGACAAGTCCAGACAAACCAGGGAGAAAACCTGGTTCCTCTGTTAATGCTAACTCCAACTTCCCACAAGAGTTT----TTGGTAGTTTTACAAT---ATAGTCCTATTAACAGAATTCTTTACAAGCCTAATGAGCTGGCAGCCAGGTTTCAGCTTGGCA-CCGAATCACCCTGAAATCATTT-GTTACTGTGTAAAAAAGTTCATCTAAGTAATAAATAAGTGATTTACAGGTAAGTCTTTGGAAGCAACTGGTTAGAAATTGCCT--------TTCTTTACAATATATTCAAGcatgtaaataaaacaaaaaaccaga-----------------------------------------atacTTAAAAAAGCT------------------GGAACACT--------CCTTTCCCTTTCAAACAGAATgcttaaatatatgtttttgcTTCTTAGTATT-GACAAGCACTATAGCGGATTC-TTTTTCCTTATGCTGAAAA-----AGCTTTTAATTGGCTTCATAGATAACTAGCTCA-TTAAATTctgtaaaaacagaacattgttttcgcacattcatttgtttatttattgtgatATGAAGGTTTTTTCCTTAACCTTTGATGTCACTGTGAGGACGCTAGCTCTTTAAACTAAAATTGTcaataaaaaattcatttcttacCTTGTCAGAAGGTTTGAATGGATTTCCTTGTCCACTAATTCCACCACTGATACTAAATCCAAGGCCAGGATTCTTTTCTATTCTCACACAAAactatgtgaaaaaaa------atttaaaaagtaatcaaaCAGCTATCAAATCTACACATTTGCAAATAACTTTATCTCAGTAGCAAAGATTCA--CATTTCATATAGGTAGCTTATGTTCacttagtattaaaaaaaatcgGTATAAACTCTAACAAAA---------CTTTCAGCACTTCCCTATGT---AAAATTACCTGAG----CAAGCAGACATCTGTAAGTACTTGTTTATTAGCAGGACTAAATTTTGATCGGCAGGTTCCAAAAATTCAGTCT-TATGAATGCTGAAGAAATTATGCGTTTTCTTAGCTCCTTACCATAAAAGTAATAAATCCAGACTAATAAG--AAAGCAGGG--------CTGAAT----CAGCACAAGACAGCTCTTGAATGCTGTGAGAAAATGCAG--------------CTACTTACAGTAAaactatagaaatat----tttaaaaga-----aaaccctGCTACCTAATATACAAATCTGCTTTT----CAGTAGCGGA-----------GAACAATTCATCCTCTTGGCAAACGATTACAGTGCTTAAAAACGCAGAGAGGTTCCATTGTGAGAAGGGGACCCAGCTGG-ACGGAGGCTGAGACTGAAACTAAGGAATC--ATCGGGGAAGAGTCTG-----ACCGCAGGCCCAGGGCCAGGTCCCAGCTGGGCATC-----TCAGAAGAAACTGAAGGTCAAGG--------------------ATAAGTCAGAGAAAGAGGGTCAGAGTGTGGGGAGCTTGTTTG-----------------CGGCAGAGAACGGCAAATAAATG-TTCTGGGCCCTGAGA-------ACTAGTGTCCTAATGTTCTGGGTT---ATATTACCTCTACCA----CACCCCAAATCACCAATACAAGTCT-----CTTAGACACAAGAGCTTGGTGTT------------------TTCTAGCATGGTGGGGACGGATGCCATTAGCAGTGGGGTCCACTGGGGCTTGGGCTGGCATAATAGTGAAGATGATTCTGCCAGTGC--GTAAAGAGTGTAGGTCAAGCATTCCCTGGAAGGAACTTCG-----GTGCAGACGGACCAGAGAAACTGTGCGAACCTAACAATTCTCGGTGATCCTGGGCTGGGGATGAATGTCT-GCTGGCAACACGGGACAGTGACCCTGGGTGG------------CTGAAAGCCTGTT----TTCACTTGCAAGGCACTTTA------------------ATCACTA------CCTCTTAGACAGTTCAGGGCAAACCTGAATCCTACTCCTGGCTCAATTAGTAAACAATGGTAGCCACTGGAACTTAAAGCAACTAGGTTTTTCTGCTTAATGGGACCATTCTTA----ATTCACTGTCATATttcatcataataaaaataatctttaac------atAGTTCACTTGTgacaaaaggg---gaaaaattgtTTACTAATATGATTTTTATAGTGGAGTCATTAAAGAGTAGTTTGCAAATTATGGGTGAGTGTACAACGATCAAAATACTcttctatagttttattttaaagatacatttaATTACAACTTTTCCTTCAAGTGAGCTAGATTGCTTAAAACTGGTTTTCCTAAGGTGGTAGAAACCACAGCTTTTAACAGGTTGTAGT-----------------CAGGGGAACACACATATAACTG-CTGATGCAG-TGGAAGGAATAGTTtggctttattcaatattttagtttacct-tttgttattatttattcattgaaaaatgagaagaaatca

a score=37079
s chr3           158134156 2691 + 160039680 GCCTTTGTTACAGCATAATTTAAACTTCATTAACTTTTTAGAACCTCTAGAGAATCAGTAGCTATACATCATTATCTGACTAAGGGGCGCCTGCCTGGCTTGTTACACATTAAAGCCAACAGGTAGCCTGGATCAAGGAAAGGGA--AAGAGAAACATCTTGAGCA-----------CCTATGATTCTGAGGATTATTGATAC-----------------------------AGAGACAATGCTTGAAGCAGCTGGAGTCCCAGGGATAAATGGCTCTTAGCAACATCCAGAGAAAATCTGGAGAAATAAGTTAATATTAACTGGTTTGTTCAGAATAC----------------------AAGGTTGA--------------------------------------------CTAA---------------CATGTACAGCTCTAGATAATAA--CAGAGCAG-ACCCTTTATAAACATGTGAGGGGTGAATAAT---------GCCCTG---------------------------------GAGTTTTGCCTATAGTAATCTGAATAATGAAGTAAGAGGGATTAATTGTATGTG-----CTAGATCAAGTTGTTTCCTCTCTGAG--CTTCCTA--TCAGGGCACATTTT-TTTTCTGGTATCAAGGAAGGAGAAT--ATTCTACAGTGGAGAGTGAGTTCTCGATTCTAGTCAGGGCAGGAAAACAATCATTCTTGTTATAAAGATTTTGCTACATCACAATGATCAGTAGCTTTTGGAACATCT--AAAATATTTCTCTTCTAA-----TAATTTTTTT----TAGAGTTTTCTATACTCTGTACTATTCAACAACCAGAAAATAGGACT---AAAATGTTTTTCTGCAAATGAGGATGGGATAATAGCTTACCTTTCAGTCCCTGCACTTCGCCAGGGGTCTTAGTCAACATACCCC-ATCCAC-AGAGCTGCTTTGTAATACTCAAAACCAGTGCTGAAG---AATTGAATTGGGGTGGGCAGTGGGAAGAAAGGACAGGACTGGAA----------GACCATTGCATTTTGCATGCTTTGAAAGGGCATTT----CACCGT---------TGTGTTATTGCCCATAACCACTGGAAGCAACGATAAG-TTCCTA-----TGAAGAGCATCATGTGTGA----------------------------------AGGACAAACATGCAACATGGAGTTGTTT-TAACTTCTT--GAAT-----GGTTATTTACTGTTATAAGACTAGTCCTTACCTGCTCGGGATAACCGTCCATACTCCTCTGCCCTTTCGTTTGAATTAAGCACCGTCCAGGCTGAGGTCCCCGGGTAGCCTGTGATGAGGGGATCTGGATGGGCAATGGCGATTGGAACTGCTGAATGGTCACTTTGTTGATGTTCCCTTCATATGGCTGCTGCTCCCGGCTGCGGTGCTGAAGGCTCTGTGACCCCATCAGGGTCTGAATGTGGCTGCCTGCCTGTGGAGAGCAGAACC-ATTAGGCCGAGTTCCCTGTGTGCAAACAGAAGGCAGCAGTGCCACCTCATGGGTGAGA----GACTGGAAGAAGATACCCACAGGTGAGAGGGTA-TCAAGTGGCCTTCCAGCCCAGGCTGGGAAGGATAACAAGAGGAAGGTAAGAGGGTGTGCATGGGGCTGGTGGAGATGTTTGTA----------------------------CTGGT-ACCTGGTGGTTTGCCAAATATTACTTTATTACGATTTTAAGGAAACAAAATTCATCTGAAAAGAATATAAAAAAATGAGAGAGTTCACAA--TAAATATAAAGGGGAGTGCTAGCTGatatttatattaaaaaaattaCTCAAAGAGCTATATA--------AGCACCAAGGACAATGA-----------TCCTGCTCCCAAAGGTATAACAGAGGGATCGCCTAAGTTCTATG-ACACAGGTGCACAGTGAGCTTGTTCTGAAGAGAATAATCAATGTTTATTAATTTGTTATTAGCTCGAGAGCACCAAAAAACCAATCGTCTGATAAATGCCTGTAAGATTCTGCTGCCTATAGGAAGTGAAGGGTGTTTAGAATGAGCTGTGCATTCTCCTTTGTTTTAGAGCTCTTAAAGGAAATGATAAATAAAGAAACCCATAGTAAGATGGAACATCATCTA-------GAGGAAAATAT-----------TTTGCTGGATTCCAAA-------CAAGAGGTAATTTAAAAATAGAATACTCGAATTTAC--TAATTGGC----------AATATGCAA-----TGCAAAATAAACAATATATTTTATATGTCCAATTAGTTGTCTTAGCATAATGAACCATTTTCTAGTTTCATGAACATTAAAGATGTTTGAGTCATGGAGAATTGGAGGGAAAGTTGT----GGGGTCTTTAGCCTGTACCAGTGCAAGGTGCAAACAGTTA-------------CTCACA---CGACCATGACCACAATGTCATAATCTCATGGACCTAGTTTATGTAGCGTCAAA----GGCAAATGCTTATTCCTCAGACTCATCTGTCTTTTTAAGAA------------------------CCTTCCTGCCAGTCTAGAAGACTGGAAGTCCTTATGGG------------------AAGTTTGGCTATTCTCTACTGCCATACGTTTTT-------------------------------------------------------------TATTCT------------------------CTTGTTTGGTAG------------TTGGAAGCATGGCAAAC-------------------------------ACAGG--------ATTATATTCTAAGTTGTCTCCTGAGTGACCTCACTTGACATGGCCAGCTACATGCCAGAGAGAATGATCT------------GAGGTTCGAGGTTGAAAGCTGACAGGG------GTTGGTTTCTGCA-----------TTCCTAC------------------------------TTGGTTCT----------------------CTGGTAAAATAATTGG---------------------------------------------------------------CAGCTTCTGCACCTTAATATACAATCTGCATGAGAAAAATCAATAATGTCTGCTTGAAAGCTACTCTGCTGATTAATTTTGAAATGACTGT---TCAAAGGTGAA---TCAGACTTCTTTATTCTGCCAGTTCTTAA--CTTTAGACATGTTTTTCTGATGTATTTTTTCTTTCGACAGGCCAGTTTGAATTCAGGATTATATAGATGTTTGAATTGTTTTtg
s HiC_scaffold_1 145488871 3241 + 233722169 GCTTTTGGTAGagcataatttaaaacttttttacttCTTACAATCGCTGTAGAATTAAAAACCTTGTATCATTATCTGATTAAAGATT-TCTGTCTGGTTTGTTAGACATTAAATCCAGCTCTTGGCCTAGAtcaagaaaggagaggaagagaattattttgaaaaaaaaaaaattgcccgaGATGCAGCGAAATAGTAATACTTTCAGTTTCAAGACAGATATTAAGAAATAGAGGCAATATTTGAAGCAGCTGGGATCCAAATGATAAATGGCtctta-----atacaaagaaaaaatg---agaaaaattaatccTGCCTGATATAtttagattcctttttttttttttccagtaccggagatcaaactcatagtctcgtacttgccaggcaggcatttgtgccactgagctaaatccccagaccactgcatg-atatatttagaaaataaaacaaggaagcaTGATATGTAAACCTTtgagtaataaataataaaatgaaagcctTGCATGTCACACCAAGAAGTTAGTGAAGTCAGTGGGAGCTTTGCCTA--ATTATccaaag---gaaataagagaaattcaTTTTATGAGAATGTTCAGATCTCAATGTTTTGCTTTCGAAAACTCACTAGATGAGACCTCATTCTGCTCTCTGGTTCCAGGGAAGAATTATGGATTCTACAATGGAAAAGCAAATCCTAATTTTAGATAGGTCAGAAGAGCGGCTA------------GGTTTTTGCTACCTGGCATTTATTGGTAGcttttggagcattttggaaATATTCCTCTTGTGACTGTTTAATGTCTTCATAGCAAAGTTTTAT---CTCTGTACTGTTTGACAGCCAGAagacagaactttaaaaatgctttctccCAAGT-AGAGGGAAATCATAATTTCCTTTTTGTGCTGTCTGTTTTGCCCCGAGCCTTGGTCAGTACCCTCTGATCCACCAAAGCTG-----GGACACTCAGAAGCTACACTGCAGTTAAACCAGAGTTGGGTACGCGGC------ATAGGACAGGATTGGAAAAACTATTCTGACCCATGATTTTTTCTTAATGGGAAAGGGTATCTTGTCCACCCTAAATGCTTATGTGGAATAGTCCTGGGCtactgaaaaaattaataaaatttctaCAGCGTGTACTGCATCCCGTTCAACAGGATGATGGTTTTACGCATCCAGGACCACATCAGGAAACGTAGGCAAACTGGGGTTTTAAATAACTTCCTTGGAATTCATCGGTTATTTTCC-----AAAACTC-TTCTCACCTGTTCTGGGTAGCCATCCATGCTCCTTTGCCCTTTAGTTTGAATTAAGCACCGTCCAGGCTGCGGTCCCCGGGTGGCCTGTGAGGAGGGGATCTGAATAGGCAATGGTGACTGAAATTGCTGGATGGTCACTTTGTTTATGTTGCCCTCGTACGGCTGCTGCTCCCGGCTGCGATGCTGCAGGCTTTGGGACCCCATCAACGTCTGGATGTGGCTACCTGCCTGTGGAGAACACAACCTGTCAGGCAACGGTTCCTG-GTGCCGAGGGCATGC----------TTTTGCTGTTGAGAAGACGTCTGGA-----ACACCTCTTGGGGAGAGTGCAGTGGCTTGGGCTTTCAGCACCAGCTGCAAAGGATAACCA-AGAAACAT---GGGCTGCGACCACATTTTGTGAAAATGCTAGTATCTGAGTGCGCTAGCATTAAACGTATTTCTGGTCATCTGCAGGCTGGCTACAGTTGGTTAACCTCTGCTTTTAAGGGAACCAAGTGCA-AGGTGAAAAAtctcaagaaaagaaagcagtcataacttgaaaataaagtgGAGCTCttgttgacattttattttgcaaaatctCT----GAGGTATAGACTGTCAATGACATGGAAGGCAATGAGAAAAGCGGTTTCTTaattctgaa-acaaaacaaactga-----gAAGTTTTATGTGCGTAAGCATGTAATGAGCTTGTTCAGGTGAGTATAACCAATGAGGATTAGTTTTTT------------GCATTATTAAATCAAGAATTTGAt------tctcagaattctttttttttt-------------ttttt-------tttggtctttttcctttttattggtaccagggatcgaactcatgact-----gcctgcttgcaaggcaggtgcttgcttatgccgctgagctaaatccccagcccccgattcTCAGAATTCTTAAAtgctattaaaaattaattatgtgaCAAAATCCTGAGAGTATCTGTAATCGGTGGAGGCACTAGATATGGAAAGTTCTTTAAAATGAACG-------CTGCACATTCCTTTAATTACTTT---------AAACATCTTAGA-------GAGCAAta--------taaggaaacagaaacaggagGAAACGTTTCCTAAAAGAGCGCCAGTCTGCACCAGCACAGTAAGAAAACAATTACCATTCCAACAGTCTCACACTTCAGCTGCGATCACAAAACAATAACCTCATACATACAACTAAGGTAACCTCAAAAAACGGTAAATGCTTCCTTCTCTACTGTATCTATTCTCTTAGAAATCTACATTAAGGAGGAATCACAAGCTTTTCAGCCACTGTGGAAGAATGAAGGCTCTTCTGGTGAAGTTTTTCCTTCCTACAAATTTGACTGTTTTCTGCTTCCATGGAATTTTACAGCATTTGGTTGATAGAAGACAGAAGTCATGATAAAGCTGGTATTGCACTTAGCTGGTGtattctgttgtcttttttttaagataaggacttgctatgtagcccaggctggtcttgaactcatggcgatcttcctgcctcagtctcctgagtgctgggaggacaggcaAGTGCCACTATGTCCAGCATAGTATTCTGGATGAACTCACTAG-CATGCTTAGCTACATAGTTAGAAACACAATCTCCCACTGTTGGAGAAGCTGGGAGTGACGAGCT-ACTGAGCAATTCATTGATTTCTACACTTTCTGGAGCTTCTTACCTCCCTTGGGGAACATTAATGTGTCTTCAGTCAGTGCTTCAAACCATGGGAGGGAAGGGACTGGCAGTTTAATTGGAAGTGATCACATAGACAAGCAAAACAGTTTTACACCCAGACAACTCAGAAGGAAACCGGAATACAGCTTTGGTGCCTTAATATATAACCTACAcgagaaaaatcaataatgactacttAACGATTCTTTTGCTGATTAATTC---AGTGACTGTCTATCCAAGGCAAAAATGTAAATCTCTGCATTATAGAGCTACACAAGCCTTTAGACTTA--------------TTTTTCTCCTGATGGGACTACTTGAGCTCAGGATTATGTGGAT-CTTGAATTCTTTGTG

a score=20875
s chr3           158144834  951 + 160039680 TAGCAACAGTGATAAAAATGCAAGTTATTTTTTCCA-TATTAATATTTTAAAGAACCAATACATAATGAGGTTAGAGGG-CTAATA---ACCATGAGACTAGAAATTGAAT----------------CTTCTCTTTGGCAATAACCCGTGATC--CCCCCAGTTACTGTGTTATCTAGGTCTTTTAGCTATACAGTAAGTCATGGACATTTTTGTGGTGTTGGGTTAGTTTTGTATTTTTGCTTCTAGATTTTTCTCAAAGCAAAGATAACATTAATGGGAATGATTATATCAATTTTCTGAAGGAGAG-TAATACTTTGCTTTATGCATCACCTGTGCCAAAGATTGATATATGAAATGTTTTAATCCAATACCCTTTCTATTGCTTTAATATATGATGAGTTTATTCTCTACCT-TGATTTGATAGCTAGCTAATAGATAATTTTTGAGTTTGGACTTTTATTAAAGGG-ACAATTCAAAGTCAGTGGGGACAAGAAGAGTACCCCGACTTTG----------------------------------TGTCTACTGCATGGCCACACTGGCA--------------TCGGGAAATAA-------AGGGATGTGCTCTGCTA-----AGAATATTGGCACATCATGTAGGAATCCACGATTG-----------------TTAAAGAC-CTGCTATTCACCTGCTACTTCATCTTTAGAGCAACTTTTGATAAATATATTTTCATAAGCTCCTATCCATGTTACTTTTGTGGAAAACTGTAATTACGTACTAGAAAGAGTAAGCTTTAAAAAGTTTTACACAATCCAGTTAACATTGAAAGCAATTGG-TAGAACTATATCATCCTGGTCTTTTGGGTTATCAAAACAAATATTTGAAATGGATCAGTAG--AAAGGAAATTTCTTC-TTAAT----TCAAAACTATCTTCCTGACTT-GCTATTACCA-----TGGCACTGCCTCTTTAGAGTCTTATTTTTATAGAATTTGTG-----------------------GCTTTATT-------------TAATTCTTGTTTAGCAAGTAGATCAATCCCTTTCCCCCACTTTCCT
s HiC_scaffold_1 145500953 1088 + 233722169 TAACAACAGTGGTAGTT-TGCCAGTAAGTTCTTTCACTCTTAAGATTTCTAAGAATCTGTGGGCAGTG---TAAGAAAGTCTGATACAGACCAAATTGTGAGAAATAGAATTGTCCCTCTTTGGCATCTTGTATTTGGCAATGACCCTTAATCAGCTGCCAGCTGCCATGTTATGTAGGTCTTCCAATTATGTATTCAACTGTGGACATTTTTAGTGTGATATATTAACTTTGTATTTCTGCATTTAGATttctctcaaaacaaaggctATGGAAATGTTACGAGTTATCTCAGTTCTATGAAGAAGAAATAGTCATTTGTCTTAAGGAACACCTATGTCAAATATTGATGGATTAGGTATTTTAATCTGCCATTCTCCCAATTGCTTTAATCTGTAACAAGTTTATTTTCTACCTCTGATTTGAGAGCTACTTGAT-GACATTTTTGGAGCTTGCATTTTTATTAAAGGATATAATTTAATGTTAGTCTAGATAAGAAAAATCCTCTG--TTTGCATGACAGTGAGGTCTTTCAGTACTAGAGACAGCTGTATTCTGCATGGTC---TTGGGAGATAAGGGACCTACTTGGGAGATAACTCACAGAGGGACCTACTGTGTGAGTTAGAGAACGATGTTGCTTCAAGTAAGAAAATTCTAGTGCAACGGTGACAATGAAACTAAACACTCTTTCATTCAGCTGTCACTTttacttta-agaaaattttcccaTTCACATTTCCCCAACCTCCTCTCTAC-TTATTTCAATGAATACATCTaactacataataaaaataaaa----ttgaaacatatCA-GTGACTTAGGTAATATTCAACTTAGTTAATTAAAAGTACATCATCCTACCTCATCAgatgatcaaaataaattttggaaacaggtCATTAAATAGAGGAAATTACTTCATTGATCCCCTCACACCCTTCTTCCCGATTCAGCGATTATTAAATTGCAGAGCTGCTTCTGCAAGGACTCATTTGCATGAGCTTTTTACTCCTTTTGGGTCAGGTACTCTTGCTTTGGTAAGTAATGGTAAATAATTCTTGTTTAACAAGCAGGTCTTTCTTTCTCATCCTCTTTTTT

a score=42716
s chr3           158148174 1648 + 160039680 ctcgttgactctgTTAC---AACTTTAGATGTGGCAAATCAACCTTTTATGGT---ACATTTAGTTTTATGGAAGTTGATTATGTGCACTGTTGAAGCCAAGGCTAGATGAAGTGTATACAACACATCTTTCTGTCCTTGCACTTCAAAGCACACCTTAAGGCACGCCTAGAAATGGTAA------ATCTGCAGAGGGGCAT---GCTACTTACATATAGCTATTGCTAACT--GAGCATCAGACTGTGTTTATTTCC-ATTATCTTCAATGCACTGACAGTTGACCAGAAGCCCTTGAATGTCAGGATTATTTAGCCTGAATTTACTATGAGGTTAGAAAGGATGTTAAGACACAAGATATGGACTACAAATTACGATGGACGTGTGAGGTTCATGGTTTGTG---TCAACTTGAAATTGATTACCTTTTTAGTAATGGTGTCCGGAGGTACATCCCGCCTCCCAAGTGGGTAAGGATTCCATTGGCCACTAGGAGAGACATCTTCTTGTCCATTGTCTAAAATGTTGCTTTGCTGGGACGGGGTCTATTGCGAAAATGGTATGGCATTCTTTAGTGATGT---------TTACGATAGTTTTCTGAAAAGAGTCCCTAACAATTATGGTAAAATTAATTTTGTTTGATTATATAAAACATATATCCTAACTGGAAACACTATTATATGCTATTTACTGA---------TTAACTGACAACTATTTTGGAAGCAATGAGAAATATGATTAAAGTAACCGTCTCAGAGTTATTTACTGAATTTTAAAG--TTTAGATTCTCTATAATACCTGAATAAAGATAATCAGAATGAGATTAATTAATGCTTTAAAAACACCCATAACATTTTAAATCTTGCTTAGTTTGTCTCTTTAGTTTGATCTTACCACTTATAATATAAACTGAAACCATGAAATTCATAGACTGGAATGTTCAATATTCCAAGCCATAGCTTAACATGAATTTTTGGACTTTGATGTGATTTTGTAAAGATGTATTTTCCAATAATCCTTGGCAGGATCAGCACTGGCA-GATG-AAGATGCTTGGCACTGT-GTATTATCAACAGAC----------------------------------AGCTGCTAGCGTCATGAC-CAAGTAAGCCATTACTGTTCTGATTACTAAATTCATTTATGCATCAC-----------------ttatatattaaatttaaagtaat----aagtttaaaaaaattGTTAGTGTGGTATTTT----------AGCAAATAGAAATATCCTGTCTTTTTTAATATTGATCTCAGATATTTTGAGATGATCCATACTCTGTCTAGATTAACATTAA------GCAATCATATACCATTAGAAAGGTGAGACCTATAG------TTTCTACTGG-AGAGACAACAGGTGGA------------------------ATATATAGTGTGGGGCATGTAGAA------------AAATTCTCTTCCCCT-CTAACCTCCAGGATACATGAGTTTTGCTTGTCTTATTGGGAATCCGTGTGAGTCCGTT----GCTGCCCACACCA----GTCCTTG--CCCACATTCTGAAGAATCCATGTTAGCAAAACCTGACCAGTGCTTGGTGGTATTCT-GTGTGAGGTGGGTCCTTCAGTCTTGGTGAGCTGGGCCACTGCCTTCATAACCATCTTAGAC-AGCTGCTTGTCAGGCTCATCTGGCTACACTGAGTAGTCCTA------TCACTA-TAAAAAGCAACCCCATAACATCTTTATTTGTATTCTGACCACATGCATGTTTTTAAAGAA
s HiC_scaffold_1 145509471 1698 + 233722169 CTTGTTGAATGTATTGCTGTGACTTTCAAAATGCTAAATCCATCTTTTCACGCCCGACAGTTA-TTTTATGTAAATTG------------GCTGCAGCCCA---TTGCAAAAGTATATGTCACGTACCTTTCTACACACAGACTTGGAAGAGTATCTTACAATACTCTTCACAGTGGTAGTGTAGTATCTGCAGACAGGCAGCAGGATGTTTATAAACACTCATCACCCACTCAGAATACATGGCAGTGTTCATTTCCCATTCTTTTCAGTGTACTTACCAT-GAACGGAAGTTTAAGATGG--AATAATATTTTGTCTGAA-----------GTTAGAAACAATGCTAAGACACA-GATATGGGTCACATATTACAACAGATGCACAAGCTTTATGGTTTGCGCCATCAATCTGAAATGGGTTACCTTTTTAGTAATGGTGTCCGGAGGTACATCCCGCCTCCCAAGTGGATAAGGGTTCCACTGGCCACTAGGAGATCCATCCTCTTGTCCACTGTCTAAAATGTTGCTTTGCTGGGACGGGGTCTATTGCAAAAATGGTATGGCATTCTTTAGTGATGTAATAGAAGCTTAGCATAGTTTTCTGAAAAGAGTCCTTAATAATTAtggtaaaattaatttcatttg----tagaaaaaatacATCCTAACTGAA---ATTATTAAACACTGTTTACTGAATATGAATTCTAAATTACAGCT-TTTTGGAAGCAatgagaaacataaataaaataaacatc------ttatttactgattttaaaaaactttaaattgtttataatccctgaataaaaataatcagaataaaatcagtta-------aaaactaca--------tttaaaacTTGCCTAATTTGTTTCTTTAGTATAACCTTATCACTTAGAATATAAATTGAAACCATGTCATCCATAATATGAAACTTACAACATTCCAGACCATAATTCATAAGG------------TTGTAATGATTCTGGGAGAATACGCCTTTCACTAatccaaaatattattaaaactgGCATAATGCAAGATTTATGGCACTATCATGTCACTGACAGCTTTGGAGAAAGGTTAAAGCAACATCAAAAATATTAAGCTATGAGaatcacagtaaaaataaatcatga--gTTTTGATTACCAAA------TATACatcacacacaaatacatatacatCACATATAAAGTTTAAGGTCttcatagagtttttaaaatttttttgc-tggttttctgtgtATGTTGAATAAATAACaatactttgtattttt---------cctaGTGTATTTTAGGAGGA--CAT-CTTATTCTAAAGAAATAGCAAGTAATTGCAATCAAAGACCATCAGAAAGCT----TCTACAGTGGACATTTATACTGGTATGTACAGTGCATGCATGTACACATTCTTCATATTCTTCTATATATACACAAAGAAGTGTACAAAGCCTCCTTTGCAAAGGCTTTTCCTCTCCTAACCTGCAGGATGCACACATGTTGCTCGGTTTTCTG-----------GAGTCCTCTTACGGCTACCCGCTTCGCAGTGTCACAGGACCCGTACTGCCAAGCCTCTGTGGGAGC------------GTGTGTATAGCTACTCTGGTGTGAGGACTGACGTCCATTCTTGGTGAGTGGGAACTGGGCCT--------GTCACAGATGGGCCGTGTGTCAAGCTTCTGCGGCTTCACTGTGCCATCTAATTGGGTTCTCTGTTAAAAACCCATTACAGAACTGCCCTATCTGTA-TATGaccacatgtattttttttaaaaa

a score=263982
s chr3           158150476 11941 + 160039680 [encoded data, 13887 characters]
s HiC_scaffold_1 145511506 12876 + 233722169 [encoded data, 13887 characters]

a score=67484
s chr3           158163622 3049 + 160039680 TGGTCAAACACAAATTTTCACTTTCAAGCTT-------TTAGTTCCCACTGTGA----CTTCCCATAGCCTCTTC--CCACTGGCCTTGCATGGATGCCAGGCCCTGGAAGTTGGTTTTG-ATGCCCTCCAAAGTCCCAGGTGAGCC-CACATGCTTACCTGCATATTCTGTGTTCTGTGCAACTCACATGCCA-AACACAATTCCAACATAAAGCAGATTCCACTTTGT--CAAAATTGCTGACAACGAACATTTGGGAACCCAGAAGGGGAAATTCTCAACACACCTGTTACCCCACAAAGAGTTATGGACGGCATCTTTAGCTGTTGCCTGCAAGGACCCCACTTTCATCCGGGTGTTAGAGGATGCCGAGGAAGCTTGGGAGGGCGAGTAGTCTGAGTAGGTGCCTGAGGAGACACTGTTATTCAGACAGTGAGTTTTGTCAACTTCAGACTCATCAGTTGATTCTGAAATTTAAAGGGGAAACATGTTACAATGCTACGAACACTGACGGATAC---------AAAAGATGTATGAAAAGCAGATTCCATATGGATTAATGTCAGAAGCACACGTGTGCGA---GTACTTATAGACTATGGCATGTC--ATAATGTATAAGTGGCGATTTATCATGCACATGCATCGG--GCACAGTTC-CACATCGGCTTCACGATGTTACCTTTTTTGTCCTTCCCTAGCAGAACAAGTTTGGGTGGGTACAGAGGGGTCTCAGCTAATGAAGGGTGAAGTTCCCCAATCCTCATTTCATTAGCTGGATGAACAAAAGAATCCTGAGAGATATAATAATACAGGACAAGGAAAGTAAACATTTAAATAACGGTTAACCAAGATGGCAATATC-TTATTTGGCTCAGACTCAAAG-ATGCGGCCCTAGACTTTAATTCACCACGGGGCATTGCAAAA----TAACCTCTGTGTCTGT-AATTGAGCACTAA-TTATTTTTCTAATTTATATGAGCCcatttattcattagatgtgtttttggatgcaatttgtatgcctggcactgtgcaaagaactgtggaggtttcccagaaagatacaacatggtcctctgggaatttccaatctaat--tgagatggaacagaACTCA-TTTCAACACGGCATTGAATTATGCTGCGCCCTCCACAGGCAGTGTGGCTCAGTCATAGATATTGGATGT--------GAGAATTCTAGAGGCCGAACTCCCATGAGTTCCAAGTAGGAAGGGCATTGCTGACCAGTAGGA---TCTTTGTTCTACCCCATTACAATATCCCAGTAGTCCTGCACCCCTGCACTCCTGCAGCCCTTGCCTCTGCTTTTCAATCCCTGCTGTGTCTCAGGTGGCTGTCG--GCAGTCACTGTGTGTCTGCTGTTTCTCCTTCCTGGGTTGTTAGCATTCTCATGGCCATTTTCAACCTATTTAATCTTCATTGCA-TATTGAATGTT-GAATGTGATAAATGGC-AGTGGTGCAAGAATATGACTTT---ATAAAAAATGAACAATATAAAAGTTCCAGAAGCTTTGAAATCCCCCCTCTTGAtttatttcattttatgtgttagtggtttgcctgcatgtacataaatgcactatttgtatacaattcctgtggaggccagaagagggcattagatttcctggaactggagtttaaca--ctgtgggtgctgatgaacttgggtcctctgcaaaagcaaccagagttctcagccattgagttgtctcatcagTGTATAAATTCCATGAGTTTTAATTTCTAGAATTCAGATCATTTCCAATTAAACAGGTATCAGGAGAACATTAAGAAAGCTAAAATTTAAATCTCCACTTTCTATACACACAGCTGTGTCTTTTAACTTCTTTATGATAATTTGAATTCAAAGAACATTCAAGGTtttgtttgtgtgtttgtttgtttgtgtgtgtttgttAATTTGGAGCACTGAACC-AACACAAGTAGAGATGTTTTCTTGAATTGGAGAAGGATACACTTAGATAA--AGTAGGAATTTGGAAAGATTTGTCTAGTGTTTG----GTTGGTGTAATAAATGGGCAGAAACACTCA---------------------------------AAGGAACAGGCTATAGGTTTCTGGTCTTTCAGAAAAAACACATCCATTTCTTTAATTCTTGA---------------------------CTGAAACTTTTTTGTTTGAACTTGTTTTTGACA--------GTGTATGAGAATATTTTCTTATGAAAAACCA----ACATC----TGACTGATACTAATCAA---TTTTAAAAGAATTATATTTCAAGATGAAGATGATCCTATCAATTAGTTCAACTCTTTCCCTGGACCTGGGGCACAGAAAAACACTTAAGAAAGACTCAGCGGTTCTCAATGTGGTCCTCTTGGGTTCCCAC--ACAGCTAGTCCCCACTCCAGAGTGA-GGCTCCCAATGAGAC---CCCCTGTATCAGGGACCTA---------AAGCAAATGATCTGATTC-AAAAGAGATCCTAGGAGAAAAAGGGTGATGAAAAGCCTAGGGCTGAAGAGAGAAATATGAATTTCCATG-----------GAATTTCTAAGTTCAGCACAACAAATGCACAGTAAAATTTTAAGTTGGTATAATAAAGAGTAAAAGCATGTGTATGACTTGGGAGGAATTAATAAGAAGATGCAAGCTGGAGAAGCACTTCTGTGCAAGGACCAAGACATGCTGGCCTG----------TCAATCACAGGGTACTGTTTCTCTGTCCTGTTTCTGCCTCATCACTTATTAATCAGG-CACCTTGGGCAA--GGTGAAGCATTCTCAGACCTGCATCCAACACATTCATCAGATGAAGGTGGTAGGTAATAGAATTAGTGCTAATGTCTGTCTAG---------TCTATGAAGGTAAAGGTAACTTATTTGTATGAAACAACTTGGGAAGGAGGCATTTTTAGATGACACCTAATACAAATCAAAGAGTTTCTTCTTTTAATAAATAGCAAAATGAAAATAAAATGAGATACAA-GAACAAAATCAAGCAGTCATATCAACACAGACTGTTGACATTACT-------------TCTTTTACCTCATGTTCTACA-ATTCAGTATTTAACATATTTTGCTCCTATGCGTCAGTTTTTAAAATTTGTGACCAGGGCTCTGCA---------TGGCCCAACTAGGATATGAGTTTCTGACCCTGTTCAA
s HiC_scaffold_1 145525163 2922 + 233722169 TGCTCAAACACAATCTTTGACTTCTAAGCTGAGCAGCATTGGACC----TGCGAATCTCTTACCATTGCTCCCTCAACCGATGGCCTTGC-------------CCTAAAGGCTGGGTCTGTCCACTCTTGGAAATGCCTGGTACACTTCATTTGCTTACCTACCC--TCTGTCTTCTGTGCCACTCATGAGCTGTACCGCAATTCCAGGATTAAGAAGAttccatttaaaaacaaagtggCTGGAAATAAGCATTTGGGAACAGAATCGTGGGAATTCTCAACACACCTGTTACCCCACAAAGAATTATGAACCGCATCTTTAGCTGTAGTCTGCAAGGACCCCACTTTAACCCGGGTGTTAGAGGATCCTGAGGAAGCCTGGGAGGGCGAGTAGTCTGAGTAAGTGCCTGAGGAAACACTGTTATTCAGACAGTGAGTTTTGTCAACTTCAGACTCATCAGTTGATTCTGAAATTTAAAGGGGAAACACGTTATAATGCTACGACCAATGAGGATTACACACCCCGAAAAGTAAGCATGAACAACAGATTCCGCACTGATTAATGTTAGGAATGCGAGCTTGTAAACTATTTTTATAGGCTACGGCACATCAAAAAATTCACAGCTGGCGGGTCATCATGCACATGCATCGGTAGCGTATTTTGCACATGAGCATCACGATGTTACCTTTTTTGTCCTTCCCTAGCAGAACAAGTTTGGGTGGGTACAGAGGGGTCTCAGCTAATGAAGGGTGAAGTTCCCCAATCCTCATTTCATTAGCTGGATGAACAAAAGAATCCTGAGAGATATAATAATACAGGACAAGGAaagtaaacatttaaacaaaGGTTAACCAAGATGGCAATATCTTTATCTGGCTCAGATTCAAAGAACATGGCTCTAGGGATTAGTTCAACATGGGGCATTTGGAAAAGCGCACCATATGTATCTCTGAGTTGAgcacaaatttctttttctgatttaagTGAGCCCATTTATTCATCAGACATATTTTCCAATGCTGTTTATGTGCCTGGCACTGTGCAAAGAAGCGTGGAGTatccaaagaaagacaaaatgtggCCCTCTGGGAAGGGACAGTCAGCTGGGGAGATGAGTGAGAACTCACTTTCAACAGGGC--TGGATCAGAATGTGCCCTCTGTGAATA--GTAATTCAGACACATGCTTGGCATTTATACGCACAAGAGTCCTAAGGGGTGAGCTGGCA-GAGGTCCAGGGGACAAGTGTGTCACTGACTAGCCGGGAGTTTCTCATCCTGGGCCACACTGATGCTCCG------CTGGGTCCCCTAAGTCCTGC--TCTGTAGCTCTCCCTCCTAACTCTTAGTATTGTCAACATGACTGTCTCCCCGATTGCTTTAGCTCTACCACTATTTCCCCCCAAATTTCCAATTTTC-CATACCGAACT--AGGCTGTCAAATATTCATCCTAGTATCCATTCTTGGAGTGTAACGACTCACAAATGGAGTAAGAATATATCCTTACCATGACAAATG---AATGTGGAAACACCTACAGATTTGAGAT-----------ATCTAT---------------------------------------------------AATGCAAATCCTG---------------------------------ACTCCAGTTAACCAAGCAGTggg----------------------acaaaagacaaaataacaatCATCCCTT-----------------------TTCTTCTAGCTATAA------------AAATGCTTTACA--TATGCCTATAT-GGTAGagaattatg-----------tta---------tttttatat------ctgtttttcttGAAT--TTCACATCTATTTAAGTTCAAagagttttc-------tgttt-----ttcatttgtt--------attgttAGTTTGGAACATTGAACTAAACATATATAGACCTCTATTGTTAAGTCAAAGAA-AATGCCCAATGACAAATATCTGAAATTCAGTAAGACCCACTGAATACTTAATTTGTTGGTATAATCAACTGACAGAAACccttattataaaattatatgttgACAAGTACCCCCCTGTAGTGAcaacctttctctctcttttctttc------------tttttttctttctttctttctttctttctttctttctttctttctttctttctttcttttctttcttcctctctctctcatcctAGGTTTCTACAGAAATATTTGCCTGTGAAAATCCATTAGACATTAATATATCTAATATTTGTTAACTTTTTTAATAGAAGAAGACTGCAAGAT---------------CATTAAGCTAACTCTGCCATTG--TCTAG-----AGGAAGGTTCT-----GAGACCCAG-----TTCAA-GTG-------TAGGTTCACACAGACACCTA---CACACTGCACAGTACTGGATTACAATTCTCCTGGCTTCTAGCTCAGCAATCTAGAAGGTGTGAAATGAAGAATTTGATTTGAAGAGGGAT------AGGAAAGGG----TGAAAATCTTGGGGCTAAGCAGAGGAATTTGTATTTCCatgcattttgaaaataagttCAAAGTTCAGCCTGAGAAACTTCTGATCAAGCTTTAGAGTGACATAGCATGGAAGAAAAACCTTAGTGCATCCCTGGACAAATTTATAAGAAGATGCAAGTTTAAGAAGCAGCACTGAGAAAGGCACCAAATACACTGACTTGTTAAAACATTTCAGTTATAagttgtcatat--------tattttcttttcctaacttaGTAGTCAGGATTTCTTGGGAAATTAGTGTAGC---------TCTACA------------ATCAAAGGGAGA-GATAG------GAGTCAGCACTAATTTATGTCTGGTACTAACATTTTATGAAACTAAAGGTAAATGATTTGTAGGAAATAATGActcaaaaaggaaatttt--atgatACTTAATAGAAcataggaa---ttttattttaataaagaaaaaaattcaagcta---gggatacaatgaaagaaaagaaacatttgtagGAATGTAAAGTCATAATATTACTaaacattttggtctttttttccttatgaCCTACACACTGGATACTCA--AGTGTTTGTACTAATGAAACTGTCACTTAAAGTTGTGACCAGAACCCTGTATGGTAACTGTGGTCTAACCCAGGTGTAAATTTCTGACCTTGGTCAA

a score=218722
s chr3           158167487 11567 + 160039680 [encoded data, 12875 characters]
s HiC_scaffold_1 145530173 11913 + 233722169 [encoded data, 12875 characters]

a score=35772
s chr3           158179581 2174 + 160039680 GAAGGAGCCATGTCTTTGGAATCTTCCTTAAAATATTACAGCATGGAGACTC------AGACTCCTAGATGACATAC-TACGGAGT---------TTTAT-----TGTCTGTGAACCAGTATTCCTGGATAGAGATTAGAATTAGACATTCTTTTTTATCCACAA-CATCATAAACATTAAAGAATGTATCAGTTGACAGCCTACCTTCGTCACCACGGGGCTGCTGGGGAAACATGTAGTTGGTTAGTACCCTTTGCTTGGTTTCTGGGTGGGCTTCTGTTTGCAGAGGGATAAGGGCCTTGGACTGGAAGTAATGAGCAC---CAGTTAGATG---------------AAGAAATTAGTCAAGATTTTATACAAGGAAATGGCCAATA---GTCTGATCTTTC---AGAGATGAATGGGTAA-----------------------ATTGAGAAACCGCAG-ATAC--------TGCTGAGA-----CTCCGGATTTTAAGGTTTTCGTGTTTAG-------TCTTCTTTAGTATATTC-----TTACAAAGCTTACCAAAACCTGTTCAGCTATGCACT-TCAGTTCT-ATCTTGAGGAGACCAGAGAGTGCTAGACTTACTGTTCAGCAGAGTGAGTGTTTGGAGTGGTCCTGGCCATGCATTCCTTTTCAGGAGTTG-TGTTCTAGGCAGATATGTGGTATCTGCACTTGCTATTGAGCAAGGCATGCCCCGCATATGGATAAAAGCTGTGTAAGAATCTGATGTTTATGCTGAATTTTATCCTCCATCACTAATTTGATATCAGGAATACCATTTTAAAGGCTTTTAGAACTCAGGTATTATTTTCATAAGAATAGCATAAAGACTACTTCATAGGAAATACAGAAGGCGCTCTGAGGTATTATTACACCTCATGAAGCTGTCTAGAG--ACATTAACTCACAATTTTAGTTAAATGGAGCAGTAACTTTCTGGTTATTCTCCAACAAGAATAATACTTTGATAAAGAAATTTTCACAATGTAAGGCTACTGCCCCAGCAGCAGAGTTCACAGACTCTGGAGATGACCATCTGGAAGGACAGACCAGTTCAGAGGAGGCCATAAGAGTTTGGATGACAATTTGA-----CCTTTGGCCAGGAAATGGAGGCAAGGCCTATGATTAGCTGAAGAAATACCAAAATTCTTGTGTTTACACTGTGAATTTTGTAGGAGTCATTTTTAATTTTTAATAAAAGTACTCAAGTAATTG-AAATATATAC----------------------TTGATGTCCAGGGAATATTGATATATCAAACCAAAGGTGTATTGTTTTTATTTGGCCATTCATGTTTTGGGGTGGTTTTCAAAGATTTAGAAACAC-AAAAATTGATTAGTAGTAAACTCTGGTTAAATGACCCA----CAGCTGCTTTTGAGTCAAAGCACATGTCTCT-GTTTTCTGTTATTTTTCAGTTAATAAAATTATTCATTAACATGCAACCCCTGATTCCATTATAATCTATTTTCATGAGTATATAAAATATTAAGATAATCACAAAATACTGAAGATAGCTATC--AATATATCAGCAAAGGTTTTCAATAAAGTTTTAGAATCAAGTTGATTATAATTAAAAACAGTGAGGAAAAAGGAAGATAGTGGCTAGCAATTCCCTCTTGTGGGGATTATGGTAATGGTTTTTCATTTTTTACTTTCGGAGCTATAATTAAAGCATATCCTCTAAGGAC--ATGTGTACCACCAGGATCTGAAAAGCCATACAAACCATCCATTGTATAACGTATCTCTGAAAATGAAGTAAGTATTGAACAGAGGTATTTGGGGAGCTTGGAGATCATGACATTGCTTCACCTACAGCAGTATGTGA--TGGAGCCTTTGCACAAATCTCTCCTCCAGGCATAAAGAATCTATACTTTATAATAGTTGTCAAGGGTATCTACTGCGAC------TCAGTAATTCAGAGTTTTAATCACACACACATTTAAGGAACATGATAAATCAGGGCATAAGGGTttatta--ttattattattattattattattattattattattattattattattattTTACCTGATTGTCAGAAAGCCACAATGCTGCAAGCTCTTTGAGTTTGGTGAAAGAGAATGGCAAATTCTTCAACCTGCAGAGACAAGAGACATCTCATAGCACAGGCACAGAC--AACAAAGCTCATTTCTAGGAACTTT----AAACATACTACTGTGTTGG-TTAATTGCTCTCTTTAATCCTTTCTC--CTGAGT-GCTCAAACAAT-CTTAAAAGAATGAATATCT
s HiC_scaffold_1 145542271 1928 + 233722169 GAGGAAGCATTTTGTTCTGGACCTTACTTAAAATAGTATA-TGCAGAGACTCCTGCTTACACTCCCCAGTGATACACGTGTGTCGTGTGATTATGTTTATGGGCTTGTCTGTGAGACAGCCCTGCCAGATGGACATCAGGACATGACTGTTCTTTTTATCCCTGGTCATTGTAAGGACATAAGAACTTCT--ACTGACAATTTACCTTCATCACCACGAGGTTGCTGCGGAAACATGTAGTTAGTCAACACCCTCTGCTTCGTTTCCGGATGGGCTTCTGTTTGTAAAGGGATAAGGGCTTTGGACTGGAAGCCAAGAACACATATAATTAGATGCCTACAAGCGCAAACATGAAGACTGTCA--GTGTCAGACACAATAACGGTCAATAGACGTCTGGTCTCCCGAGAGGAATGAACTAGCAAAAGAAAATCGAGTGACAAAATGGAGTAAGGAAGCGTAACATACAAGACCCTTGTTGAGGGATATTTTCAAATTCTAAGATTTTCATAATGAGGTTTCCTTCTTCTATATTATATCCATTTAATacaaaatttatcaaaatctACTCAACTGAGCAATGCCAGTTTTGATTCCGAGGAG---AAAACATGTTCAACTG--TTTTAACTTAAATTAGCTTTTTGAATGGTTCTATATGCCTATTCATTTTCATGGGCTGTTGCCTTAGAAGGACA------------------------------------------ATGG-----------------------------------------------------AATTTGCTGTCAGA--------------------------------------TTCATA-----------------------------------------CTATG----------------CATGAAG-----TAGAGTCACATAAACTC-----------------TAGAAATGACTTACCACATAT-------------TGATATTGTG----AAAAATCTT----------------------------------------------------------------------TAGTTTAATG------ATAAGA-TTTGAATGACAATCTAAGTGTTTATTTAGTCGGTTGATCGAAATG----TTGTAATGACTAGAAAATCAAACATTATTTTCAAGTTTAC-------ATTTTGGagaagttgtttttaattttc-acaaaagtAGCCCAATAGCCATAAATATAAACAATTCATTTAGTAGTAATGCTATTGTTATACTCAAAATAATGATAAACTAAATTCAAGatggatttttttcatttgctcatttgtatttt------------aaaattttagaaacaaggaAAATACAGGACTAATGAACTAtgtgaaaattacacatttccaATTCTTTTGGGGGCAAGTCAGCTATCTCCAATTATTTAATATCTTTCATGCAATAAAATTATTCAGTAGTACTCAATTACAAATTCAATTAT--TCTATTTCCATGAATATAGAGaataatatca-aaacagaaagtgCTGATAATAGTTTCCAAAAGATATCATAAAATTTCTGGAATAAAGTTTAAGTATTAAATTGATTCTAATTAAAagcacaagaagaaaaagaacatagtAGATAATAATTTGCCCTGGTGGGGATTGTGGTAacagttttt-attctttgcatTCAGAGATATGATTAAAGTCCGTCCTCTCAGGACATATGTGTCTCATCAGGGG-TAAAAAACTATGAAAGT----------------GATCTCTGATGATGAAGTTGAcactaaatgtaaatattttaaggg-GCAGAGAATATAGTCCTGTTTTGTCTACAACAATGCTTAAACTGGTATCTTCACAAACATATCACTTCCATgagataaaaatttgtattttgtaatatttgtCAATGGCATCTGTTGGGAAAAAAAGTCAGTAATTC--AGTTTCAAATATG-GTTCATCT--------TAATAAACC-------AAAAATCTACCAagcaagtgtttttatt-------------------------ttattttttttttacctgattgTCAGAAAGCCACAATGCTGCAAGCTCTTTAAGTTTGGTAAATGAGAATGGTAAATTCTTCAAtctgcaaagataagaaaattcTAATAGCAAGAGGTGAAGCTTTATCTAGTtcatttctaagaatttgtttaaaatacCCTAATGTGTTGATTTAAGTTTCCTCTTTAATCTTTTCTTCACTGAACAACCTgaacaatgtttaaaaaaataaaaatct

a score=9947
s chr3           158185373 139 + 160039680 ATACCTATTATCACTTAGATTTAAGACACGCAGTCTCTGCATCTGCCCAATTTCTTCAGGAAGAAATTCTAGCTTATTGGAGCGTAGAGACATAACGGTGACATTCTTACAGCTTCCAATCTGCAGGTGGCAAGAGGAA
s HiC_scaffold_1 145547531 139 + 233722169 ATACCTGTTGTCACTCAAATTTAAGACTCGCAGTTTCTGCATCTGTCCAATTTCTTCAGGAAGGAATTCCAGCTTGTTGGAGCGGAGAGACATCACTGTTACATTCTTGCAGCTTCCAATCTACGGGTGGCCAATGGGA

a score=40213
s chr3           158186208 1547 + 160039680 GTAACATGTATCTTATATTCTTTCACATATTAAAAATAG----TTTTCTTAATAATGTAAATGTTCAAACATTTGGTGGCCCTGTGGTTTTCGCAAATCATGTTATTTTTCTAC----ATGATTACTAATCTG----TTTAAAACCAGACAGCACACATATTCA----ATGATGCTCTTGATAATTCCTCAGAAAATCTAATTTTATGTCATATTATG-TGATACTTGCCATTTTTACTAATAATGTTTTATTCTAAAATAATGACATA---GTTATTATTCTATCATTGTGGAAATTTGTAGTAGAAAGTTTTAAATGAAAAATATACTTTACGTTTTTTTCTGAACATTAATAAGTAAAATCCAGTTTAGAGATAAAA-TTAAAAGAATCTCTTCATGTAACCAGAAACTAAAATAGT--TACAAGAGT----CATCAAGCCTCACAGACATA-----ATAAAAACCTACTCTTTTACTTCAGAAGTAGAGATGCAATTATC-CTGACTGCTGTGTATAACTATTCTTAAAGGTAAAGTAAATAAATGATCCAAAACTGCATCCTTTAGCATTGATTAACATATTTTACTTTT---CTTTACTTGCAAAATT-TAGTCCATACATCATATGGAGTTCATAACTC---------AAAAAAGCAATTAGCATACATCTACATAAACAGATAGGCAATGC------CTACATATTTTCA-----------------CAGTTCAACTCATAAATCTATCCTGTGATTGCACCTGTTAGGATTTCATTTAAAAACAGATTCATTGACAGTTAATTGATAGAA-ATGAGCTTGCTTCTCACTTCTCTTGGCAACTCTGGGAGGAAATTCTCGTCAACCGCTAATGTTCGAAGGCTGTGCAGGTAACCAATGGTGGGAGGGAGGGACTCCAGCTCGTTGCAGCTGCAGTCAAATTCTTCTAATAAAGATAAGCTGAGAAGTTAAAACACAGCA-TTAGACATCC-TCAAGGTTATGTGTTAAGGAAAAAAAG--AGGTTTGAAAAATCCACATGTCCAAATTCACC---AAATATTATTAAACTAAGATGGCACAATAGTGTATAAATCAATCT-----AGTT------AGTG-------AGTACAGTGGAAAGGATCAAATGCCACCACAT--ACATGGCTGCATTTGTCATTTATC----TGCAACC----------------CTCAGGATGACACAAAAGATA-----------------GTTTACAACTTAGGTGTTGTTGACAACAGGAGGCTTGGATTGAGCA------CCTGTG-------------------ATTGGAGCGGCAGAATG------TGAGGGGA---GCAGAGAGAAAGATGGAGCCAAG----GGTGAGCTGCTCCAGATTTTACTAAGTGCCTTAGAGTCT------AGACTCCATTAATAGCTCCCCTTTTAAAAAGTGAATACAATATCTACCTTTAAA--AGTcattttacagatggtgaaagtgaggcttacagagagcaaggaatatgctcccagccac-acaaagcagcaaatctggggcagaagc--------aatggcacacagcttgcttgactccaTCATCCCACCT---GTCAGGCAGACAT-GCCCAGCATGGAGGTGTATGCTGtttgaataacacagtatt-taaaatataccaagttttacacagtggctcagattt-tggtgcctcttgaaa
s HiC_scaffold_1 145547893 1714 + 233722169 GCAATAGATACctcattttcttttacatattaaaaaggGAGCACTTTCTTACCAATTTTAGTAGTAAAACCCTTGCTGACACAATGGTTTTCATAAATCATA--GTTTTTCTACTTAAGTGAGTACAAATCTACTCATTCATAATAGAAGAGTATTCATgctcataaaatga-aatattgacaGTTTCTTGGCAAAGCTAATTTTTCCTCACATTACAAtggtatttgtcatttgtattcaTAACTTTTGGCTCCAAAACAATGATATATTGATTACTATTCCATCATTAGGGAATTGGTTagtagaaaatattaaattacaaAGATATTTCATGCTTTTTTCATAATATTAGTAAGTGAAATCCAACTTAGAGATAAAAATTAACAGAATCTCTGGTTGGGTCTAAAAGTTAAAATAGTACTACTATAGTGCAATATGAAACCTTGCAAACATATTTACAGCAAAACC--CTTTTTTActtcaaaaacagaaatataataatctcaaaatgttatttataatagc-----aaaacatagaaattaaatgatataaaattttgtCCTTTAGCATTG-TTGTAatatttcactgttattttttgCATGCAATCTTCTGGGTTAAATATTA----GAATTTGTCACttgtcttttaaaatagaataatttaccCACATGCATGCAAGCACCCCCCCATGACACCCCtccacatatatttatataaacagaGAAACAGCATCTCAGCTCATGA-TCTCTAGTGCCACTACATCTGTTTGGATTTCATTTCAAAACAGTTTCCTTCAACGTTAATTGATAGAAGACAAGTTTATTCCTCACTTCTCTGGGCAATTCTGGAAGGAAATTCTCATCAACTGCTAATGTTCGAAGACTGTGAAGGTAGCCAATAGTAGAAGGTAGAGACTCCAGTTCATTACAGCTACAGTCAAATTCTTCTAATAAAGataaactgaaaaaattaaacacactAGTTAGATATTCGGAAAAGTGAGgtggcaaaataaaaaagcaagtttTGAAAAATGCTTATATTTAATTTCACCAATAAAAGTTACTCATCTGGGCCTGCATAACattatacaaattaattttttacaGTTCAGCCCGGTGGTTTCATATCACCATAAAAATGCTTTaacacagtaaaataaatatggTTA-ATTCTTTACCTGTCTTAATGCAACCACCATTTAATGAACCACTGAAAATGACagaagtggggtttttttttgtttgtgtgtttataaGTCAGGAGTCGTTTACAGTCAGAT-------TTGAGCATACGACCTTATGCCATGTCTCCGAAATCGGCACTGGAGAGGCAGAAGGGCTGGCTCAGGGAAGGTGAAGAGGGAAACCCAAAGCAAAATACTGATGAAGTGCCAGGGATCTTACTAAGCACTTTAgagattcaaaaaagaaaatactggtcTCT-TCCTTTTAACAACTGGATAAGATCTATACCATTTAAGCATCCATTTTATGGACAGGAAAACTGAGTTTTACAGAGGCTAAGTCACTTTCTCAAAGCCACTGCAAAATAGCGAAGCTGAGACTGAAACACAGATGAAGTGGC---CGGATGATCAGACTCTGTCCCTCAGCCTGCAGTTCTGCAGTGGTAGCCAGGGACAGGGGTGTATTTTGTTTGGTGTACAATGTATCATAAAAAATAGTCAGTGTTACCTCATGACCTAGATTTCTGGTGCGTTTTCAAA

a score=33883
s chr3           158196145 4088 + 160039680 [encoded data, 4690 characters]
s HiC_scaffold_1 145560823 4005 + 233722169 [encoded data, 4690 characters]

a score=30038
s chr3           158201291 1308 + 160039680 ATGCTCTTTGTAGCTGACAAGCTACAATATTGCAACA-CACACACCAGCTCTTCCTGTACTCATCTGCTCACAAGTTTCATCTAAGGTGACTAACA----TTCAGATCAGAGAG--CCCAATATCCCCACTGCATCACAACCTCATGAGATGCAGCTGGTAAATGAGAGGTTTAAT--GAAGATTTCTGTTA------------CATCTGACA-GTTGGAGAAACACTTTTGGAAATGTGTTGATTATGTAAAT-AAAAAGCCAGCCAATTTATGAGAAAAACTAAACTATGTGATTTTGTTAAAACCAGTGCTCTCCATCAGCCTGAAGGATCAGTTAAA------GTGGTGATAAAATATTAAAGGGAA--CTGGAAAACTGCCCTGTCATCAAGTTTCCCTCCCACTGGGCTACTTAGCCTTTAACTTCCAGAAACGTTAGCAAGTTGCTAAATACAATGGCACATCTACTGCAAATA--------GGTTCAAATCCCCATTTCAAAGTTATGAGAATTGACGTTTATTCTCCTACCTGAGACATCTCAAAAATAATAGGAAGAATAT-----------------AAAAGA-----ATATTATT--ACCCAGTCCTTTATAACTTTACTCAT----AAAATTCATAAAATGCATAAAATTCCCTAGTGTGCAAGCTATACTTACAATTATTCCTACTGACAAGCATCTTACAACATATTAAGGACAACGCGTCTTTTAAAAATAATGGAATTAAGAATCTAATTTATATTCACACATTTTTGTGT--TACTTACCTGTCATTCCAATGTTA-----------------AAATGCACCCAC-----------------------------TATCACCAAATAACTCTAAAT----CGAAATTCT-TACTTCTCATGACAACACTGTGCAA-----------------TTCAGGACATTTGATAATTTAAGGGTATATACCAATTTACTAGGAAGAGAGCTGGATATGGTAGCTAAAGTTAACTGTTCATTTTAAGGAATTCATAATATGTTGTTTTATGATCTTGCATGGTAAATTTGCTAGTTCATTAATGTTAGACTAGTAGTATATTACCTACATGCATAAACAAGTTATACTGCC---AAAAAAACCTGTACACTTGACATAATTACTCATGACAAAATGTTACATCCTCACCTATTGAGTCAGGCAGCTGTTGCAACATATTGGATGATAGTAAGAGGTCCTCGAGGGCTTCACATCCAGAAATATCCATATCAACCGTTTCTATCCTGTTTTTTGACATATCCAGGTATACCAACATCTTTAACTTCCCTATAGACTTGAAGACAGTGCATAAACTCAGGGTTAGTTGGGGGAACTTTCATAAGGCTCTTGAAGTTGTGAAAACCACAATGTTGTGAAATTAATTTTAACACCACCGCCA
s HiC_scaffold_1 145566757 1369 + 233722169 ATGATCTTTACAGCT-------------CTCGTAACAACACAAATCTGTATTTTCTAGACTGGCCTGCATGCAAACTTCATCTAGGATATTTAATAAAAGCACAGATAAGAAGAGTCCTTGCAGACTTACTGGGTCCGAACTTTTAGAACCAGACcctggaaataagaaaaaaaatttgaataattctCTCAGGCAAGTCCTATCATTCAGCAAGTTGGAAAAATCAGTTTTCCCATATGCC-ATTATATAACTCAAAAGGTCTGCTAATCTA-GAGAGAAGGTAGGCTATG--ATTTCGCTAAAATC-GTGTTCTCTGTAAGTCTCGTAGAATGGTAAAAATGGAAGTGGTAATAACATGCTAAAAGAAAAATTGGGAAACTGCTTTATCTTGAAGTTTTTCTTCTCTCACGTTACGTAGGCTGTGACTT--------GTTAG-AAGTT-TTAAATCCCA--GTACATAAGATGCATATATTCTGAGGAGGTAAAAGCTCTGTTCAAAAGTGATGGAA-----------CCCTTCTGATTGGGTCCCCTCAgaagtaatataaataatattaacaaGTTATCTACACAAAAGGTTTATATactatttaaatttgtatttcataattttactCATGTATACACTTCATTAA---CCAAAAATG---TAGAGTGCTTATTAT--TAACAA--ATTTCTACCTTCAAGTATCTTAATaggtttttaaga---------------aaataatataaccaataagatgttttatgtttttacttttttatgtattGCTAAATTATAA---CAATGCTACAAAGACACTGAGAATTAAATACAACAACATCCTGTGGACAGCAGTCATTGTAATCTATGCAAACATACAATTTCAAGTTACACTAAGTTATAGAACCATTAAAACAACATTTTTCAAGGTAAGAgacacaaacatttaaaaaatatgtcaatttaggagaa----ccatttTAATATGAGTCTTCTTGAATTTGACAACTAGAGTTAACATTTCATTCAAACATATTTGtgaaatattatttcatgatATGGCATAATAgatgtatgattttatttatatcagGCAGATGGTATATTGCCTGTGTCTATAAACACACTATTCTGCCTCACAAGAGAAGGGTGTACTTGATGTAAACAGCCATGACAGGATACTGTATTCTCACCTATCGAGTCGGGCAGCTGCTGGAGCATATTGGATGACAGTAAGAGGTCTTCAAGAGCTTCGCATCCAGAAATGTCCATGTCAACCGTTTCTATCCTGTTTTTTGACATATCGAGGTACACCAACATCTTTAACTTCCCTATAGACTTGATGACATCGGATAAACTCAGGGTTAGTT-GACAAACTTTCAGAAGACATTTGAA-----AGAAACTACAatactataaaattaatttaaaaagcaacttca

a score=32368
s chr3           158205421 4662 + 160039680 [encoded data, 5419 characters]
s HiC_scaffold_1 145569883 4832 + 233722169 [encoded data, 5419 characters]

a score=34017
s chr3           158210526 3067 + 160039680 TTAAATTGTTTTTCACTCTTTACCCTTTCAGTCTTGTTGGATAACATCTAAAATCTGCACCTCACAAAGGAAGATTACCTTCAGCTTAAGAAACTTTCTTCCACTTTTACTTAAACCTTTTATTTAACAACACTCTTGCTTTATTACAAGCCCTTTGGCTCTCACAAGAGGCAAATGTTTTATTCATGAATTTCATAGTCCACATTTGAAACCCCGATACACAAAATTGGATGGCTGAAATTGTTCAGCACTTGATGAAAAGCCCACTTATGATTCTCTCAGTTGTGATGTACGACATGACTTGAGATTGTCTAACCTCTCTAGGTAATTTCTTTGGAGACAGAAAGGTCACCTCCATAGGGTCTGTGCTTGTTTCAAGGTTACATTAATTTTATTCTTCTCTGTTTTATTTCAGAA--TCAATTCTACT-AACATGCTCATAAAAATTTAATGCTTTGTTTT---AATT--------------------------CATCCACTCTCAGTAATATATAGGAAAAAAATGATGTTATATTTCAGTAATTGTTGAGTGAACAAATAGGTATTCT-AGTGGCAATCAAGAAAGGCAT------TTCTGAG-AAAATGTAATTGATTCATAATTAATTAAAATACTTTAATCCATAAGCTCTTATGAATATTTTAATAT--CTATGAGTTGAATA-AATCCATTTAAATAATCAGATGAGTATATTGATGGAATAAGGGA------AAAGATGACATGAAGTGGGGAAGGAAAGCAAGTATGTGAAATGGTAAAGTCAGCATAGCAAGGGATCTAAAGATTCTGGAAATCT------------------------------------GGCCAGTTCTCAA------AAAGTGGC----AGTTAGAAG-----------------------------------------------------------------AGTCTCACTT--------------------------------------------------------AGAG------------------------TGCTCTTTTCTATAGATGCCAGCATGCC-AAGCATGAATGACAAA----ATTTTGCTTCTTATAATGCCCAAGTGCTAAGATGTCCTCAACA-AGGTGAATGTATGCAGTCCTTCTGGGGGTAGTTCTAGAGCAGAAATGGTTAAGGTGACCCACATGGTCCAGAGTCGGGAGAATGGCTGCCACAGATATTCATCTTTAAACATAGTAGAGTTGTTATAAGGAAGTAGGGATGGTTTAATC------TAATTCCACATTT-GGACTAGAAATAATTATCACAGTCACA--GGGACAGAACAAAAGTCTACACCAGTAGGCAGGTAATATTTCCAGGTACATGTTTCCAAAGGCAAAAATCTAATCCTCTTT--CAGTGGCTCTTC-TATCAAATAAACATGTAACTACCTAGGAAAGCATAAATGATAATTAACAACAAAAGCTAACACTCACTATTGTAAGACACTTTGAAAGTTTTATTTGTTTTTGTTTGTTTGTTTGttttgttttttaggtgagcttcatcaaggccaggctggcatcaaagtcactggggagccaaggatgatttttaatttctgacactc--tgagcatgtgccaccatacttaat-ttatatgatgctagggac-----caagccaaggttttg-tgcatgttaggagaactctaacaacacagcccaagccccATCAAGGTGTTTTTCCACAGATTATTTTCTCTAGCACATTTTAACCCGTCATTGAGAGAGGTGTCATCATGGATAGGCGGTAGCAGTAACATTGAAGAGCTGGGCTTGGGGACAGGCAGATCCAAACCGTCCTTTTCTTGCCCCAGGTTCTTCCTCAGTTCTAGGTGATGACAGGTGCACCACTCACA--TGGGGAGACTTCTGAGAGTTTTtgcttaagtccaa----ttctattgttacagcaaaatacccagggactgatattttattaagtaaagagatttattAAGTCCCAAATTTGGTTGGCT---ATGGCCTCCATTTCATCAACATCTCTCTG--------------GCTGTATTACAACAAAGCAGAGGACAGCAAAAGAACTAAGTGTAGCATGAAGAAAGAG-----AAAATACAAGCTAGTTCTCTCTACAGCAGCTTGTTCTCCTGGGACTAGCTACTCCCCATGTaaggactacattaatttctgtt----aaggtcaagaccttcaatgtcttaattatctccagtcaggctctatctcttaaaggttcagtcatctcttggcactgtcatacctagactaagctcctgaaaaatgaacctttgaggaaaatggtttccaatgttcaaaaca--------GTGTTCAGTATTTGGTGAGTTAGCTTTAATCTTCATTTCACAGAGTCCCATGCCAAAAGAAGCAAATGCATGTACCCCAAGTTGTAACTATCATATGAGGATAGCTAG--CCTGATCTTAAAGCT----ATATGAACTATGGTGACTAAGT----------TTAGGAGCAGGGGATCATCTTGGGG-AAAGTGACAGGTGGTTCACATGTA-CGTGGTGTTTTTCAGGT-GAACCTCTTAG--------------TAGGAAGAGGTCAGA-TGCCAGAATTTGGTTTTGACTTTTTAGACAAATTCCCTCAAGGA--ATTTATTAATGTGCTATTATATTCC-AGAACAGGGAACTAATAATGCAGAGCAGTCCTCCTGGGAG---TTATGTTCTGGTAGTTCACATTTCCTGGCTTGGT---------------------CAAGGGATGCGATTCTGGTTTCAGAATCACTACCAT---CCATTTAGACCTCAAATTAATTGAGCT----------TGCCAGACTCTAAATATAAGAATGAAAATTATGTAACAAATATATTCTCATCTCATAGCATGAACTGGTTTTACTTTCTCTAAG---------TACATTTACATCTTCCAGCCCCTAAGTTCACTGCTGTCA-GGAGTTATGCCAATGTGCTCACTCCTGTTTG----TAGTC-TTACATGACCCAGCAACTACAAGTCTCAGATTATATAGAA---TATGTTACATTGCCCTGTGTTTACTCTGTGTCCTCTCCCTGTATCCTGTAGGCATGAGGAGCCCCACTTTCTGCATTTTTCATGCTTACTTC-----------TGCCATCTGGTCATCTTAAGCCTGTTTGCTGATCTCTGGCT---GGCACAGACTTCC--TTCCTGC----------TGTTGGTATTTGAACAACAGCACTGAGCTTGGAATACTGAGATGCTGGAAGCTTTGATCTGAACTTCCTTGTCCTTTTTGTTTTCTGCTCCTCCCAAAGCAACTGTTTCATGGGAATGCCTCTTGAAG---GCCCAT-CTGAGTTGAACAAAAGAGCAACCCATGCCCATAAT
s HiC_scaffold_1 145580413 3196 + 233722169 ttaaatttcttttgactTT---CCCTCTC-----TGCTGAATAACATTTCGAGCCTACTGTTCACCCAGGAAGCCTGACTTGAGTTTAAGATActt----ccattttcatttaaatcttttatttaacAATACACT--ATTTATGACGAGCCCTTTAAGTATCACAACTGGGAAatcttttattcatgaatttcagagTCCTTGGCTTAAACTCTGATACACACAACTGGATGTCTAAAATTGCTCAGCTCTTGATGAAAAGCCTACTTACCATTCTCTCACTTGTAATGTACGACATGCCCTGAGATTGTTTAACTTCTTCAGTTAATTTCTTTGGAGATGAAAAGGTTAGCTCCACAGGGCCTGGGCCTACTTCCAGTTTATATTAGTGTTATGCTCCCCGGTTTTATTTCAGAAGTCCAACTTCACTgaaaatgttcataaaattttaaagctttgtttttaCAATTAAGTAAAAAGCATTGAAAAGAATTAACTTtcaattttcataatatttagggaaatgatattttcacattttagcaattattgaaagaataaataggtTTTCTGAGTGACAATCAATAATGAAATGCaaaatgctgagaaaaatgtaattg--ttaCAATTAATTAAAACACTTTAAGCCAT-AGTGgttatgcatattttaatatgaatatgAGCATAATATATTCCACTTAAATACTTGGATGAGCATATTGATAGAATTAGGAAATATTTACAGATGCCAC------ATGGAGGATAATAC-----TTAAATGACAGAATTAGTAtagaaaatgatctgaaaatattgGAAGACTGCTCTTACAAATGAAGTGTAATAGAGTTCAGACACCGGCCACCCCCAAACCAACCACAGCGGCACGGACTCAGAAGCACAAGACGTGTGAACAAGCAAGCTCAATATTCACTTATCCATTTACGGGTAACTGAATTCCGGAAGTATCACCTACTCTACACAAGGAAGACACTGTCATGGTGTCCGGGAACACAATTCGGATTGTCACAGAGCTAGCCCAAACTGACTTCTCCCCATGTCCTGTTCTGTAGATGACCACTGGCCTACATATGGACCATACATtgtattctgtttctctagaaaacAAAGGGCAAGGGATCTTTTAGCAGAGCCAGATTAACTCAGAATATCTGGAAACCAT------GCCGAGAT------GACAGCCTGTGAAGACCGGAGAAGGGAGCAGTAGTGTCTATGACACTTATCTCTGAACATCTCGGGGATGTTGTCAGGAACAGGAGGTGGTTCTGTCCGGCCTTCACCCCACATTCAGAACGAGAAACAATGGCAGAAGTTGCAAGGGGATAGA---------------GATAAGTAAGT-GCACCCCCAGGGACTGGTTCCCAGTGAGATCTGTCCAAATCACCATGAAAATGGTGATTCATGTCAGATGGTCCTAAAA--------GAAAGTatcaataataa--aacaataacagGGATCAC-----AATGAAAGCTAACTTCAATTTGACACTTGCTACACTTTTTACG--------------TAGATAATTTTCGTTAAATTCTGATTTGTAGCA-----GCTGGGG----AAGG------CGCACCATCGGACAGGCAGTGAGCA---------GTGTTTAAGAGTAGGTGAATCCAGAGCCTGGTTCAGGTCCAGGCTTTGCTTCTTCCTCG-----CTGTAAAATCCTGGCTCAGTCCCC----------------------------------CATCTGTGAACCTGT---------GGATGTCAGTACTTTCAGGTG----------CCTTGA------------GGGATGAAGAGGATTCA------------------------------------CTGTGTTAAGACACTTAAACTATTCACGATTGTGTTTGGCTCTAAGGGTTACTGCATGTGACCACCTGTTTCTGATGCTATG--CAAATACTTGAGGTTGGGTGCTTTA-----TAACGAGGTTTATTGGGTTCATGCTTCTGGTGGCTTGGGAGGTCCAAATGCCAAGTGCCAGTCTCTGGGTAAGGACTCTCAGCTGTGTCACAATATGACAGAGAAAAGGGAATTGGTTGAGTG--------AGGAAGAGgattcaaggcagcagccaggatcTTGTAGAACAAATTGTTCTCCTGGGAACAGC--CTGTTCCTGGAGGAACAGAAATGATTGTTGCTTTCCAAGTGTGGAAACTCCAATGACCCAGGGACCTTCCTCGGGGCTCCTCCTCTTCCAGATTCTACCACCTCCTGACACTGCCA-----GGACCAA--TTCCAATACAGGGTCCCCTGAGAAGG-------TCAA--CTCAAACCACATCCCCTGAGCTCAGCCCAGTGGGTGTCAGC-----------TGTCACAGGGG-AGGTTTTGGCAGAAACAAGTGGCCATCCTCAACATTGCCTGGCTGGTACGGAGAAGGCAAGGAGCTCATTTTCAAGTTTGTAATGTGGTTCATGAGGAATAGATTAATTATGTCTCAAAAGTTGAGGAATATTCTGGGGAAAAACTAGAAATGGTTCACACCTACCCTGATGTTTCTTAGGGAGGGGATTTTAGAATCAAGGCTAGAACAGGAGGatatcagatttttaaagaacagctttcatttctttaacatttttatctAATTATTATCTGTAAACACCCCACTATTTACTAAGAATCAGGAGCCAGTTAGACTGA-------TGGTAAGAGCACTTATATTCGGGTACCTCATGTATCCTGGGCGGGCTCCTATAAAATACTAATAGAACAAAGCATCTGTTTCTATATTC---CTCACTGCAATGTACTATCTTCAACTCACATT--TCAAGCTTTGGCGATGGTGCCAGACCCTAAATTTAAGAGTGAAAACTGCACAGTAAACATACTCTCATCTCATCATTAAAACAGGTCATGATGCCTTCAATAAAGCATCCTCCATTCCTTTCCTCCACATTCTACCCACacagcaagcagggaggcattTCAGCAGGATCACTGTTGCTTGAAAACAGTCTTTGCATTACCCAGAGAATACAAAGCCCAGATCCCATTCAAAGCCATACAAAATGACTCTCATCTCA--------CCCCTGCTTGCTTCTTACAAG-----AGAACACAGCTCCCTGCAGTTCCTAAACACATTGTGTGGTTTACAATGCTACTGGGTC------------TTTGCAGATGTCAGTCTCAGTGCCTAAACACCCGACGCCCGCCTGGGTTTTGTGTTGGTGTCCCTGGTGTAGCACTTTGCACATTACAATCAGCTCCTGGAAGCAGGAGACAGAATCTCCTTCACCTCTGTGCCTGTAGCATCTCCCACCGTAACTTGTGTGTGCAAATATTCCACAAATCCCACCCACACTgagtggaagaaaaa---aatctgtgtttgTAAT

a score=21318
s chr3           158225930 952 + 160039680 TAGTTCTCCAAATACAGAGAAATGGAGGCATTACTAATCAGGATGTTTCAAGTTTTAAATACTTTGCCTAAAGATAAGATAGCTTGTT-ATATAATGATTCATTCT----TATTTTGTTCTTTTAAAATAATCTTTACTAGAAGAACAATTGGTAAAATTTGATTAG---ATGTAGGAAAC--ATGTTGTAATTACACATGAAGGAAATGAATAGGTACAAGAGTGAGGCTTACTGCTTGCCTCGGGTGTGCATGCATCTTAGGTAATTAAAAATGAGCAAACCTCGGG-AAACTAGGGACGTGGAGGTACTTACTGTAATGCTTTTAATAAAA-----TTAATCTTATAGTCCAGTGAATTTCAATTGCATGTGAAGACATTAA-AAATGTACTCAACAATTTCAAATTTCTGTGAGAACATA--TTCATTGCACACTCTACCTGAGTACATAGTCTG---------TAACTCATCTTTTTAGTTATATAGATCAGGGTATCTCCAATACAGAGATTTTCATTAAATTAGAATATTTTA-------------------TAAAATCAATTAGAGAAAATAGAACAGAAATAAAATCCAGTTGAAGCCCAAGATGAAAATTTTTTTCTTGCTATAATTTTCAGCCCTACTATAGATTTG--AATGGTGGATTATAGAATGCAGAATATTTTCTTTACTTTTTTTTATAAAGAAGTTTCATAGACTGTTAATTCTTTAATGTGTCCATGGGTGACTT-ATTTTTGAACTGTTTTTAAAAAGATTTTCTGACTT-TTTTGAAGTACTAGTC-AAATGCTGTTAGTTTTTGGATGAATTTATAAAACATGATAAACGCAGTCCACCTTTGCACTGTTGGTAAAATATCAAGTCTTGGTCTTTCCTACAGATTCAACACTTTTTTTTTGCTCTTGACATATTGTTTCTGCTTTCATTTAATTTTttcttctttttaaaaataaatcattttattcacttacattttaaa
s HiC_scaffold_1 145599919 940 + 233722169 TAGTTTTACCAGTGCTGGAAAATACAGGAGTTA---ATTAGGCTGTTTTAAGT-------ACTcttgttaaaaacagaaaatccaGTTTGCATAATACTAAGTTCTGCtgtatttagttctttttta-tgaTCTTTACTTGACGAATTAATGACAAAATTGGATTAGTAGGTGTGGAAAACCTGTGTTGTAGTTACTTGTAAAGAAAATTACTGTCCATGTAAATCG-------CGCTTGCCTCTGGTATACATAATTCTTAGGTAATTAAAAGTGCACACACCTTGGGCAAACTAGGAAGGTGGAAGTATCTGCTGCCATGCTTTTACTAAAATGCGTTTAGTTTAAT--TCTAATCAATGTCAGTTACAAGTTTAAACATCAATGTAAGTGCTCAGCTGTTTCACAGTTCTATGAAAACACACCTGTATTACGTA----GCCTAAATACATAGGCTAGCTAACTACTgacatttcttttcagttatatGAATTAGAATATCTCCATTCcaagcatttttatttaattactatGTTTGAAATCTTCATTTGActcaataaaaatcaaat-gagaaaa-gcaacagaaacaCAGTccatttgaatattaaaattaaaaatccctCAGTATTGTAATCTGTGGCCTT-CTAAGTACTGGAAAATGGTGAGTTATACAGTGTAGACTATT---TTTAAGCTTTTCAGT-AAGAAGTtttatca------aaaaatgtaatatatccATGGATGACTgaatttatgaaatgtttttataaagaCTGCCAGATGTACTCTCACATTTTagttaaaatgataatattttctgGCAAATTCCCTGAA--GTTATAAAGTCAATCTAttattgtattatatttaaaa-atta---------------taca----tagcCCATTTTTCTTGTCCTTAAGATATTTTTGCTGCTGTTACttaatgttttgttcttt-----aatcCAGAAGTTGAATGACCTACAGTTTGGA

a score=23055
s chr3           158239279 2253 + 160039680 CTACAAGCTTCCCAGGCCAGGAGTCCTTTCCATCCAGGTTACAAAGACAAGT----TGTTATGTAGGTCCA------TATCTCAGTAGCAGAAGGG----AAGATATTTTAGTGA--GGAGATTTTTATTTAAGGA---------------------------------------TAGATTAAAGCCTTTAATCTAGACAAATAAAAGCCTATCTTTGGCACTGACAATCAGCATAT-AAGGC--AGCATAATAATGTACTGG--ACATGGTTAAAGTAAAACAGTGAGTATTCTTCATGCATAACCTTATAGCATGAATGAAAACCCTGCCATTC-----TACACAGGGCACTGGCTCAGAGC-GCTTTTGGCCCAATAttatataca-tgttcaatttaattctcacacaagccttctgaggcaacaatcactataatctccattttatagatcaggaaaatgaggtttatagatattaattgactttcccTAAATGTGTTATCA---------GTTGGA-----AAAACTGATTGATTAGTTAGAGGCCTTCAGTTAACTACAGGTAAATTTGATTT---------TGGAGATTTGA-----CAATG--TCTAATGGGAAACTTTTGAATAAAGAATGGTGGGTTTTCTTACAAAGGA-------TTTTCTATTTGCTTTCTAATTTGATTTTCTGATTCTGGTCTTTGGACATACTTGAAATAAAGCCAAAAATTGAAAATGGCTGTCAGAACACTGTCACTCTTAAAGACAGTGATTAAGGTATCAACATGTCTTCATGAGAAAGGTTCTTTCT------TTAAAACTGGAAGGCTGCTGA----------------------------CCCTTGGGACTAACTTTCTAAACCATCACAGCAATCTTCAAAGTGAACAA---TACCCTTTAATCCTTGTATAGCCACATAACATTTACGTAT--TAGGGACCACTTCAGGTTCATTTAAATAAAGTTAAAATTACCATGTGTCAGGTGAAGATTAGCTGAGATGAAGCTTGCAGCACAGTTAACCTGGTTCCTCTTGCCACATAATTGGTAGTAAATTGTCAATACACATCTGTTCTAATTCTGACTTTTTGTGATATG-----TAATACCCAGTTC-CTGTGGTTTACTATACAGTGAAACAATCAATATAGCTATT------AGCTTTCATTATCTTAGTGTTTGGAAGCATACATGTTCACTCAATGCTTTAATGCTTGG-GTTG-----TGAAGATACAAGAAG-AATCTCCTTGAGACTAATTGACAAGTTAATGAAGCACATTTGCTTACCAGCTCGCTGAATTCATTATTGCCTAGGTCAAGTCTTTCCAGCTGGGCTAACTTGTGCATTGACCTGTAAAAGATGGAGAAGAGTACCATGATGAGGCAGCACTTGACATAT--CTCTGTAAAGATAGTCTGCCCAC--ACTTGATAGATTTTCCTGACCATATCACGTACAAAAATAAAAGCAAAAACTTCAGGATACTCCTTAGCAAGGGATGAAACACAGATGCACAGA--GAAACATGTGAACAGCCATCTGGGTACAGTTCTAGCAGACTGTGGTC--CACAGCACTGGGCCACCAATGCAG-TGTGTGATGGGAGTTAGGGTC-AGCTGTTTCAC---ACACCGGGAGTCTCATTAAGTATCTATAC---TAGAAAGCTTAGGATGGATTCACTATCATATTTTTAAGAGTTACCATATTTTTAAGAGTCACTGCCCTGATTCATTAATCACAAGTCAATCATAGTAAAGGAAGTCCTTCTACC------CATGGCTGCATCATCAGCTTTGTTA-TTTCTGC-TCATTACAGGAGCTTCTGTTACAGATAG-----AATATCTTCATTCCGAAATATCCTGAGTTGGGGCTGTAAGAGTGCTGAGCTATTTTAAGACTCTGGA----CTAAGAATTGGTT---------TCAAAGGCATTTTAGAACACCCCTAGTATGGTACACATTTCTCAAATCCTTCCCAAATAAACATACAACATAATAAAATATAGTGATTTAAAAATAGTTT--ATTCCCAACCA--CAGCATAC--------------------ACA-AAAGCTTTGAAACTTCAGAAAAAATAATCTTAGAAATTTTGG------------------------------------------GTTCTTTTTCTTAACAT------------------------------------------------------------------------------------------------AAACTATTAGATTTTTATGACTATTAAGTGAAAATATATCACAAGTTAGACTC------------------------AAACAGTGTGTG------TTTTTCACATGACAAC-Attattgagaggttattatgcactaatttagggtacagtaat-aaataaagc-tgataattttttcaccagaagactttatacgtggttggaagagaatgacagcaagcaaaacaattaagtaaaatacaa-----ggttaaaa----gtgccacagtgaaacagtgtcagcggacaaggagg-agacttttcacaaggattatattttcaataaggtga
s HiC_scaffold_1 145606897 2520 + 233722169 CTGCAGGCT----GGGCAGGGAGTCCTTTTAGCTAAGGTCATAAAAATGTGTCCCCTCCTGTGCCAGCTGAAAATTGTGTcttagagagagaaaagggaaaaggtatGGCAGAGACTGGGAATTTTTATGCAAGGAAGATGAACGCAACCCAAGGGACCATCCGACTCTTCACATCAGATTAAACTTCTCATTTTAGAGGAATAAATGTCAGTTTTTACCCTTATTGAACAGTTCGTGAAGGCTGGGAGAAAGACCAGACTGGCTACAAAGT-AAAGTAAGTTAATTGTCTTTCTCTGTTCATAAC---AGAGTGTGAG-GGAAGCCCTGGGACCCACGGAGACTGATGTTACCACATAAGAACTGCTTCTCTGCCAG-GTTGTGTGGAGTGTGTGTGTTATTTGTCATGCAAACCT-ATAAGGCAG-AATCACTACAACCTC-ATTCTATAGATCAGGAAAATGAGGGTCAGAGAGATTAAACCACATGCATAAAATCACACAGCAAGAGACAGAGCTGGAGGAGAAAAGCTGATTAATCC-TTAAGTGTTTTAACTTAAAAGCAGTTAAATTAGACTTCTGATGAATTGGAGTTTTAAAGTTTCAAGGCATCCAAGGGGGAAACTTC-------------TGGCATTTATTATGGAGAAACATTCATTTTCTATGTGCTCTTGAGATTCAGTCTTTGGTCATCATATTTTGATA------AAATGGAACC------TCAAAAGGGCAGGTAGAATTC---CACTCTTGCTG-----GAACTATGTAGCAATGTATTTT-ATTAGAAAGACACTTTCAGGACCATTATAAATACAGTGTCATTGGTGACACTTTTCTCATGCTACCAGGAAGCCTCCTGGGAAGAAGTCATCAAGCCAT----GGACTTTTGGAGGTAGTCAAGTGTAAGCCTAAATTCT-GTTCAGGCACATAGTAGCTACATATGTCAGTAGTCACTTCAAGGTCCTTTCTATGAAGTTAAAATGGTGACGTAACAAGCCAGGATTCAATGACAGAACATAGGGAACACGTTTAAA-TGGTGTTTAACATCAAGTTGTTGTTTA-AAACTGACACTAGGTATCCACTTCCACCCCAGTATTTGCTGAAATGAAGCCTAACATCCAGTTCTCTATGGC--------------------CAATTTAAATTTTTGGCCcaggtttaaattttttatgtttagcAAATGCAAATGTGCACTTGATGGTTCAATACCTGGAGttgcaaaatgaaagcaaaagaaatcatcttcCGGAGTGTACTTAGCAAGCTTAGAAAATGTATGTGCTTACCAGCTCACTGAATTCATTATTGCCTAGGTCAAGTCTTTCCAACTGGGCCAGTTTGTGCATTGACCTACAACAGATGGAGAAAAATACTCTTGTGAGGCAGGGCAAAGCACATTACTCTG-AAAGACATCCCACTAACCGCTCTGTCAGATTTACCTGAT---------TGCACAAGACATAGC----------GAATGTTCTTCCACAAGACATAAATTGCAAATATACTGAATGCAGTCTGCAAACCTTCAGC-------------AGCTTACCATAGTCTATACAGCAC---ACCAC--ATCCTGTTATGTGGCTGGAATAGGGGGCTGGCTGCTTAACAAAACCCTGGGAATCTTGTTAATCATCTCTGCCAGTAGGAGGCATATGGTTGG------GAAAGGTTTTTAAGAATCAACACAGTGTTGGAAACCAACGGAGGAACTC---AATTGTTAACCAAGCAGTCTAAAA-------CTCTACAGCGTGGCACAATTTCATCGTTAGTTCTGTTATTTTCTACTTTCCTAACTGAATTTTGGCTATAGCCAAGTTGTATTGCTTTGTTTCCCAAGCATACTGGCTTAATGGGGCAAGAATTGTGAA-----TGAATAATCGGAAAACCCCAAGAAGGAGTTGTGTTAAGGTTAGAGGCACCCTGGCATACTGCTAATGCTGTCAGCATTTTTCAAACCTCTAGTAAGCAAACATACAATGTAATAAAAGGTAGTGTTTCCTGAAAGATTTCACCTCCCTGCCACCCAGAATGCTGCCCTTAAATCTCAGGTTTACAGAAAGTCTTGAAGCATCACAGACTAAAGTCTTAGAAATTTTAGTCTCTTCACCTTTAAAATCAATGTAGAAATTacagcatttttgtttgttttgttaagacagggttttgctacatagcccaggctggccttgagctcatggcaatcctcttgtctcagcctcttgagtactggggcATGCCACCACATCAGGAGAGAAATGATAGAATTTTTatgaacatgaaataaaataacactgcAATTCTGATACTTTCAGACActcagaaatgcaaaaaaaaaatgtgtgtactTCTTCTTCATTCAGTAGCTATCACTGGGAGG---TTATATGCTTATTTAGGGGATAGCAGTGAAATAACACATAGAAATTTTTGCCCCACACGACTTTACATCCAGTGGGAGAAGGA----AGTAAGCAAGataattaagcaaaataaaataatgtattagaAGATTGTGTTATGGAGAA--AATTTATGTAGCTGAGTAGACAGAATTCatataggaattttatttttaacaggatGA

a score=14745
s chr3           158245127 479 + 160039680 TGTTTCTTTTTGGCAGGTGCCATGTTGGACAGTGGAGTTGCCACAGTTTCTAAGATGTAggtttctcaaacttgtcattactggtgttttgagatggcctct---tctctaacataag-ggctatcaagtgtgtagtgggagttttagcacaccctacacagcctcttctcTAAAGGGCTCATTTTCTAAATGGGAATGACCTTTAAGTGAGTAACTGCTTCCTAGAGCGAT-AACTGTGAGGAAAAGAATGTGTATAG---ATTGCCAAAGGAGGTCAGAAGAACTAAAG--------ACTCAGTAATTAGGAATAATGTCAGGAAGAGGCGACATTTCCACTGGGGTTTGAAGAGTTTGTTGCATGAA--TCATATATAGTTGCACATCTGAAAAGAAACAATGAAGAAACCAAAGGAGGACATCTAGAGGATAGAGAGAACTCTGTACTTCTGAGTTTGTACCTT-GAATAATACTACATGTAATATGGACACAT
s HiC_scaffold_1 145613455 490 + 233722169 TGCTTTCTTCTGGCAGGCCTTATTGTGTGTACCTGAGTTACAAAGGTTTCTGGAATGCCAGGTTTTCAACCTCAGGAACActggcattttaaaaagtcagctaAGTCTTTGTTACAAATGGCTGCTGTGTACTTTCTAGGGTGTTTAGCACAC--TACTCTGCCTCTCCTCTGAAGGGCTTATTTCCTAAAGGAGAATGGCCTTTAAGTGAATAA--GACTTCTGCAGTGATTAAGTACTAAGACAAGAGTACGTGTAGTAGATTGCcacaggaagtcaggaggaggaaaaCAATACCAATTCAGTGCCTAGGAAAAGTTTCAAGAAGAGGTGACATTTGCACTGGGTTTTGAAGAAGCTGTTATATACAATTCATACACATTTgcacatttgaaaagaaataa--agtacatCTAAAGA-TACATCTAAAGTTGAAATATAA-TCAACTTTCCTGAGATGGCagcttaaaataataatacatggAATGTAGACATGT

a score=22968
s chr3           158251278 1928 + 160039680 ATATACATTGTTTTCCCTTTACATTTATTATATTGTCAAAGAAAATG-----AAAATTTTGCCCAT---TTGATTCTTTTAAAAAATGTATCTGACCCAGATTCAGCT-GTTTTTGACTTACT--CAATCCTTTCATGCAAAGCACTCACTGAGGTTCTCCTCTTTCCATCTGGATGCTAAAACTTTCATTATGGGTACACTTTTTAATAGTATCTACTA-CACAGAGAAGTAAAATTAGATtttattccaaaatttattccaaaatACTGTTTTAGTATTTA-ATTTTGTTTACCATGGCAACTTAAAAATGAATTTTACTTAGGGTAATTTTCAATTGTCCTTAACTAGGTTTAAT-TTTTTCCAGTCGATATAATATGGCATGAAGATTATTATACTAAAATATGATTATAATATCTACTACTTAGCAGTTTTGATATAAAATATAGCAGGATAGCTATCAAGAATAATTGACTGTATTCTAAAAATATCAATGGGTAAGAAATCTACTTGATCTGAGGAAATTGGGAACATACTTCATA--GGAAACTAACTTCAGCTCAAAAATGTAAAAGATACTGATGTCTAATTACATCATTTGTTATGGCTAATTACATCTGAATAAAGTAAATCTTGTTTTTAA-ATAGTCATAATATCTACCACAGTTTCTCAGTACATGTT-GTATTCTGAAGCAAAATTCAACTGAGGAAAGATTAACTTTGTTCAAGAGAACAAAATTTGGTAATTGTCAAAGAGGAAGAAATTCTGATTCTTCAAACCATAATTTACT--CTGAGGACAAAAACAAGGCCACTGTTTAAGCTCTTTGCCTTCATTTCGTAATGATGTATCGCTTCATTTACTAAATCCTCTCTATATTAAGCCTTTAGTTTTA----GCCAAAT-----ATTTTTTCTCTACTTTAGCTGACTCCTTT---GCATAC-TTAGACGATAGGCACAATAATATAGCGGTAGTTTTTAGGTA-------ACTCTCAGCATCAT-------------AAAACCCTTGTCAaacaacagcaacagcagcaacaacaa--caaaaaaaaacaacaacaacaaAACCAAACTCCTGTTTGATAATAAGGATGGTGGCTTAAAGCTTTAGCTTCCAT-------GGCATAACAATCCTAGCATAGCAAATTTGGTATAATTCCAGCTCTGGATCTTATGTAGAAGATCTATTAAATTCAGAAATAA--AGTGATCATGAAAAGTCTTAATT--AATTTTACTGAGGTTTATTCAAGCTAGAAGGCAGATTGCTAAGGGAATTAGTACTTCAGGACTGAACTTTGACAAGCACTATGAGATAGCGCTCGAA--TGAGAGTTCAACAGATGGCATTAATGTCATTATTTTCCTAGCTGTTAAAGTATCTGGCATGTTCTAGAAATAGCAACATATTTTCTTAGTAAAGTTCTCTGCTACATGGG--AGATCAAAGGCATTCTTATTTCTTTTAACATTCATGCC--CAAGGAACAGACATGAGTCATGTTTTCCTGAGGAAGCCTCTTTCAGTGAATTATTCCTCTGTGAGTCCACAGCAGGTCATGTTATCAGGGCCAAGGTGTGAGATCTTTCACACTGAG-----AGGGCCACTTCTGAGGGTGGAGAATGACTACCAGACAAACCAGAATGTGAAATTCCCATCTCC-----ACAGGAAATGACTGCTTATCT-CAATGAAGCCACACTAGAAAAAACTGGCTCCCCCTCTTCTCTTCCTTCTCTTCATAAACATCACTGCTTCCTTACCAATATCCAAACATAATAGAAGTCTGGAGGCTATT-----------------TCTCCATCATCTTCCAAAACATC--ATGCCACACCCCTGGTCATTATGCCCCTGCGACGTCTGACCTAGCATAGGTTTC--TTTCATGGACTGCCATTG--TCTTAGTTTACCTTCCTGACTGACACCTATCTTGCATTTGAGATAGTTTCATCACCAGATTCTGCTTTCTGCTCTTTCCAATG
s HiC_scaffold_1 145620592 1877 + 233722169 ATCTGCATTGgtcatcttttatatttattgtatctTCAAAGAAAATAGTTTTACAATTTTTCCCCTAAATTGTTTCACCTTAAAGTTGCATATG---CA---TCAACTAGATTTTGACCTCCCTGCACTGGTCTGTGTCAGTGTACTCTTCGAAAGCTTTCTGCTATCACATGAGTGCTAAAACTGACCCTGCAGGTGTATTTGTTAACAGGATCAATTGGTACATTGGAGTAAAGTTTGGTTCTATTTTATAATTGAAGCGATGTGAGCTGTTAGCTGCCTACAGTTAATTCATAATagcaatttaagaa-aaattttgcttAGGTAACTTTCAAATTGGTCTTAATGTGCCCTAATATTTTTCCCATGGATACAATGTTGTGCAAGGATTATCATGCTAAAAGATGATTATAGTTATTAGCATTTAGAAATTATGAACTGGAATATAATAGGATAGCTACCAGAAATGAGAGACCACACAAGGAAAGTGACAAT-GGTAAGACACTGACTCAAAATGAGGTCAT-------GTGCTTCCTAATGAAAACTCATATCAATCCTAGAACTAGAAAGACACCGAAGTCTAATTGTGTTATTTCTTAAGggtaattatatttatataaagtaaG--ATGTTTTCAGTATGGTCATATGTTC-------GTTCAACAGT-CATATTCTTCTTctcaagaaaaattacatttcagaaa--------CTATTTAAT-GAGGAAAGTTGAACTGTTTTTCAGGGGGAGCAAA-----------CACACCATTG-TTGCTAACTGGGAAACACAACAAGCTGGTGATCTGAACGCTTCTGCACCACTCCAAAA----------CTTTA-----TAAATTCTCTAGAAATTAAGCCTTTTACATTCATTTACCACATAACTAATGTTTCCATTAGGATAATCAACCTCTTTTAAGCACATATTAGATACTAGGCAT-CCAGCAAAGCCCTGGGTCTAAGGCATGGTGTTACAGTCGGCACCGCTCCATCTAGTGGACAGCTCCTTTCCTATGAACAATGACAGGTGTCACAGCACTTCCAGGACTAACAA----AACACACTCAGACCTTGGCCTGATGA----GCTCATGTTCT---GTTAGAAATTCCATAAATTAAGTGATTAGGAAGTTAATGTA-CTGATTTATTATAATT---------------------AGGGTCCACTTGACCCAGAAGAAGCCAGAGAT-ACAAGAACTTATAATTCCAGACCTGCAGGAGC---TCCATGTATGGTGGCA-----CTA---GAGTTAGGACTTCGGGATAAAGAGTTCACCTGGGGAAGAAGGAAGCAGCAGAAATTCCAAGCAAAGAAAATGGCATTAGGATGTGCACTTACCTAGGGGTTAAAGTATTAGGGATGATCTAGAAACCACAAAGTATTTTCCCACTAAAGTTCTCCACCACATGGGGAAGGTGGAAGAC-TTCTTG----TTTTACCATGCATGCTAGTAAGGGATAGAGAACTGTTTTTCACCCCCGA-GAATCCTGGTGTGGAGCTTTCTTCCCTTGTGAGGCTACAGTAGGTCGTGTTCTCAGGG-AAAACTCAGGGACGCTCCAAACAGTGATCCCAGGGATGC-TCTGAGAGAGGAGGACAG---------------------------CCCACCTCCTGCAGAAGGAAGAAGGACGCGGAGCTCCAGTGAAGCGAAGGTGGCAGACACTTGCT-----TCTTCTCTGCTCCCTCCTACTACGCAT-GCTGCTGTTCTACCAACAGACTAAAACAATGGAA-CCTGGAAGCAATTCTAAGCACTTTGGGGGGTCTCCATCACCCTCCAAACCAGCCAGTTCCAAACCCCTACTTATGCCTCCACTGCAGCTCGTG----AGTACACGCTTCCTTTTCACCAGCT-CCGCTGCTCCTTAGTTAGCCCCTCTCA-TCACCCGAATCTGTAATTTCTGACGGTCTGGTCACTGG--TCCACTTGCTGCCATTCCCATTG

a score=14274
s chr3           158255207 852 + 160039680 ATTTATCTTGGCCGACAGTTCAGCAGCACGCCTCCTGTGTATTTGTAGGTTGT---AGGTGGCAGACTTTTCCTCTTG--TAAGGCCAAGTAATGGAATCACTGGGTGTGCATTCT--CTGCCTTCTTTATCTGTT---GGATTTTTGCAGTTATTTTGCTATATTGGTTGTTGTGAATTTATACATTTTAAGTTTGTGCAGTT-----TATGCCACTTATTCTTTAGCAAAACTCTTTTCAGTATAAAGGAGGCCTGCTAATTCCATTGACAAATATTACTAAAACCTTTCTGAAATCAATACACAGTCAACATGTTCACACATCTAAAAATACCACAAATCATTAGAATTTTAATATAATTTTGGTGGGTACCTGCATAATGGTAGCT----AAGAGCTAGGCTGTTGGGTTAAATCCTTTAGt------------------------------------------gtacctgt------tccctcatttgtaaaatgg----gacatggcagattatgtttcagggtgattgtgttactaaaaggactagatgagttaatctatgtaaT-ACTTTCAAATTCAAATATTAGCAATTCTATTAATTACTAGAGTCAAAATTCTCCTGCCTAAAGTAGGTAAAATCAAATGGGTATTATTTCATGCCAATTCACCTTAATGAGGCTTCAAAATTTTTCTT-TCTGACCTAGTA--------------------------ATTGCACTGCACACAATCTGGAATGGATGCGTCT-------TTCATTGGCCAATG-----AGGCTTCA-ACAAAAGAACTATCCAGtttttttttttttttaaataatttaCCAGCTTCTTGTTCATCTCTGTTTCTGTAAAAGACGGCCCCTGGTCTAGAATACCTCTTCTATGAAACCAAGAGTATGCTGAGAGAACTGCTAAGAATGCTAATATTTCACAA
s HiC_scaffold_1 145628302 906 + 233722169 ATTCATCTCGGTTAACA------CAGTACGTTCCACACCCACTCAT--GTTGTCAAAAATGGTAggactttcttctttcttaagcCCAAATAATGGAATCA-TGGTTACAGACTCCACTTTTCCTATTCACCTGTTCATGGACATTTG-GGTGGCTTACCCAGTCTGGCTGTTGTGAATCTATGTGCTTTA-GTATGTGCAGTTGATTGTGtatcatttattctttagtaCAACT-TTCCAAATAAAGTGGAGGCTTGGGGTTTACA--AGCAAATGTTAGCAAAattgttttgaattctgtatgtattcaa-gtatttaaa-----aaaattattgcataACCTCAAAGCTGCAATTTATTTGGGGTGAGC-TCTGTTTAGCCATAACTCATTAAGAATGAGGCTTCAGAGTGAGGTTATCTGGTTtcagattctttttcctttccagtctCGTGCCCTTGAGTGAGGTATTTGTCttcatttccttatttgtaaaatggaggGGGAATAAAAGTACCTACTTAAAGGT--------TACTGAGAGGATTGTATGAATTAATATGTGTAGGGAATTTCAAACTCTGA-GCTAGCAACTCTGTTACCTATTAGAGTTCAAATTCTGGTGCCTAAATTAGGTAAAATCAGCCATGCAGACCCTCTTGCAAAATCAACTTAATGAAGCTT----ATTTTTCTTAACCAACCTATTATGCAAAATCACACTTAAACGGCCTCTGTTGTGCTTCACA-----------GGTTTCACCTCTTGGCATTCACGAGCCAATACCCATATATCCCACACAAATGA----------TTCTCCTGGATTTTGCATGATAAATCAGCTTCTCATC--TCTCTGCTTTTGCTCATGAC-TTTCTTGTCCTAGAATATTTCTTCCATGAAGTGAAGAGCTTATGGAGAGGACTGAAAGGAAGGCTGGTTTTCCATGA

a score=10343
s chr3           158256603  928 + 160039680 ttttagttggatgtaACGCCATCTGCTTTATTTTGTTTTGCATGTCTGAGCTTTTGCCATGATGGTAATTCAACTAAAAGGGA-GTTAGTTCCTACACCTTTGCTGATTGCTGAATGCCAACCATTTTTGTCTCAACAGTGCTCCACAGCTTATCCTACTCTGAG-------AGTCTCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCAGCTTACTACAAATAT--TGTAAAGTTATCTTTAGGCTCTGTGTAAAAG---GTATGTATGAGGTTAAGTGAATTTTATGT-----TGGGACTCTA----------GTCCCATCTCCAAGGTACATAACATGCTAATAATCCAAGATAAAAAAATG----TAAAATTCAAACAATCTCTCCTATGCATTTAAGACAGGCGATAGTTAACCTGTCACAAAATGATTGGA---ACTGACATA------------------------------------------------------TCAAATGTACT--------------------------------------------------------------------------------------------------------------ATGCACTTGAGAATAATTCTGGGCATAGTTTCACAGTTTTGTAAATAGACACATAAA--ATACCCTTAGATATTTTGGCTTTATTGTTTTTATTATATATAATAGTCTCAAACAGTCAGCAGGAAATTTTATTTTCTCTAATTGTCACCGCTCCGCTATTCATTCACCGAA--AAATTTTTTGACACATCAATTTTCCTGTCACTGGAGATGCAATGCTGCATAAGGTTGTCCTGCTTCTAAAACACCTTAGAAGGCAAACCCTGAAATGATCCAT-AGCAAGATACTACTTTAGGATTTCATACCTAATGTGTCATATGCTTTTATGACAGAGAGACTGGGGTTGGAGAGCAGGGAGGTCCACACTCAGCACTGATATTTAGGTTG----GATCTTGGCCAAAACAATAAAGGAAAGCCATGTATGCTCAAGATAAAG
s HiC_scaffold_1 145631416 1074 + 233722169 TTTCAGTTGGATTTAGTTCCACTTG-Tctatcttccttttc-tccctgaGCCTTTGGTGTCTCTGTTATTTAAATGGAAGGGACACTGATACCTACATCCATCCCAGCTGCAGGAAGCCAGC-AGTTGCACCTCA-CAATGCTCTGCA----------CACTGAGCATCCGCATTCCAAAACTCAAAgtgctccaaaatccaaaa----------cttgaTCCAATATCACAAGTGGAAATTTCTACACCTGACTTCCAGTCATGGGTCACAGCCAAAACTCAG----GAAAAAGTATTATGCAACATTGTCTTCAGCTTCTCTGTCGGGGCAAGCATGTATCA---CACATGAGTTCCATGTTTAAGTTGGATCCTGTTCCCCGGCTGTCCCATTATGCAGatgga-aatattccaa-aatccaaaa-aagaaaatgctccCAAAATTAAAAC---TTCCCCTGCATATTTTGGATAAGGGATAGTCAACCTATAGTTGCAGGATTGAGACTACTAGCATAATGTTTGGTTTTCACTGGGActttttgtctgcttttttttttttttttttttttttagttgtattCTTGCTCTTGCACAGGGTGGTCCGGAACTCCTGGAGTAAAGAgcttctcccacctcagccttctgagtgctggaccACACGGATGCTCCCCGATGCTCGACTCACAGGGAGTTCAGTTGAAAATGATTCTTGGGATAGTTTCCCAATTTTCAGAAAAGTTACAGAGAGTGTGCCTTTAGACATTTT---CATGGTGCTTCTGCCACAAGTAATAACACTGAACTCTTAGCAGGAAACTGCATTTCCTTTGATTgccacatctcttttatccattcaacAAATCTAACTTTGTTCCA-GGCACTTTTTTAAGCACTAGAGATGCAGCAATGAATGAGACAGTCCTGCCTTCAAAGAGGTCAGTGAGAAGACCTTTGATGTCATTGTTGAGCAAAGT--CACGTCTGAAGTCC--------TGTGGTACATG------GGGAAGAGGGTCTGGGCTTGGGGACTTGGGAAGTCTTCATT-----CTGACCTTGATGTGGTGATGGCCTTCCTCAAACTGACAGATGGAAGCAGATAATGGTCATCAGAAAG

a score=6506
s chr3           158256747 234 + 160039680 ACAGCTTATCC-TACTCTGAGAGTCTCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCAGCTTACTACAAATATTGTA-AAGTTATCTTTAGGCTCTGTGTAAAAGGTATGTATGAGGT-TAAGTGAATTTTATGTTGGGACTCTAGTCCCATCTCCAAGGTAC
s HiC_scaffold_1 212462998 228 + 233722169 acaggttatCTGTAACCTGGAAGTC--AAATCCAAGGTGCTTCAGTATCTCAAGGTGTTCAAGCACCAACATAATGCTACAAATGGGAAGTTCCTCACCTCACTTTAGGTGACAGATCACAGTGAAAACACAG--TACCAC-CATACTATATGAGTGACCATTAGGCTGTGTGTAGA--GCGTGTATGAAATGTAAGTGGA--GTATGTTTAGATTTGGGTCTCATTCCCAAGATAC

a score=7823
s chr3           158256755 225 + 160039680 TCCTACTCTGAGAGTCTCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCAGCTTACTACAAATATTGTAAAGTTATCTTTAGGCTCTGTGTAAAAGGTATGTATGAGGT-TAAGTGAATTTTATGTTGGGACTCTAGTCCCATCTCCAAGGTA
s HiC_scaffold_1 220337540 218 + 233722169 TCTTGATCTGAAAATCTAAAACATGAAGTGTTCCAAACTGTAAATAGTTTTGATCACTGGCATGATGCCACAAGTGAAAAATTCCATACCTGGCCTTATGTGATGGATTACAGTCAAAATTAAACC--------ATTgtgtaaaattaccttcaggcctTGTGTGTAAAGTgtacatgaaatataaatgaatttcatgtttagatttGAGTCTCATCCCTAAAGTA

a score=5721
s chr3           158256756 220 + 160039680 CCTACTCTGAGAGTCTCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCA------GCTTACTACAAATATTG--TAAAGTTATCTTTAGGCTCTGTGTAAAAGGTATGTATGAGGTTAAGTGAATTTTATGTTGGGACTCTAGTCCCATCTCCAA
s HiC_scaffold_1  32755994 220 + 233722169 cctaatctgaaa-------attcgaaatgctccaaaatctgacATTTTTAGAGTGCCAATATGGTGCCACAAGGGGGAAATCCCACACCTGACCCCATGTGATGGGTCGTAGTCAAGAACAAAAAGGGGTGCATTCAGAATATCGTCTAAGAGCACCTTCAGGCTGTTGGTGTAAACTAAACATGAAA-CAGATGAATTTCCTGTTTAGACTCAGCTTCCATGCTCAA

a score=10091
s chr3           158256756 306 + 160039680 CCTACTCTGAGAGTCTCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCAGCT-TACTACAAATATTG--TAAAGTTATCTTTAGGCTCTGTGTAAAAGGTATGTATGAGGTTAAGTGAATTTTATGTTGGGACTCTAGTCCCATCTCCAAGGTACAT-------AACATGCTAATAATCCAAGAT---AAAAAAATGTAAAATTCAAACAATCTC----TCCTATGCATTTAAGACAGGCGATAGTTAAC
s HiC_scaffold_1 221380538 322 + 233722169 CTTAATCAAAGAATCCCAAGCCCAAAATACTTCAAAATCGGCAATGTTTTGAGCACTAACATGATGCCAGAAGTAGAGAATTCCACACCTGACCTCATATGGCAGATTACAGTCAAAATACAGGTGctctaaaaatattgtttaaaattacCTTCACATTGTATGTATAAAATAGCTATGA-GTCAAGGgaattttatgtttagatttgGATCCCATCCCCAAGAGAAGTTATTATGtacatgcaaatattccaaaattaaaaaaaaaattaaaaattggaaacTCTCTTGATTCCGAGTATTGCAGACAAGAAACACTCAAC

a score=3589
s chr3           158256761 109 + 160039680 TCTGAGAGTCTCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTC
s HiC_scaffold_1  59969142 108 + 233722169 TCTCAAAACCTGAAATCCAATGTGGTTCAAATTCCAAAACTTTT-GAGCACTGAAATAACGGCACAAGTGGGAAGCTCTACACCCAACATCATGTGCTGGGACACAGTC

a score=8805
s chr3           158256771 295 + 160039680 TCGGATCCAGAATATTCCCTAACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCAGCT-TACTACAAATATTG--TAAAGTTATCTTTAGGCTCTGTGTAAAAGGTATGTATGAGGTTAAGTGAATTTTATGTTGGGACTCTAGTCCCATCTCCAAGGTACATA-----------ACATGCTAATAATCCAAGAT--AAAAAAATGTAAAATTCAAACAATCTC---TCCTATGCATTTAAGACAGGCGATAGTTAACCTGT
s HiC_scaffold_1 180536187 312 + 233722169 TCGGATTCAAAATGATCGAAAATCCAAA-CTTTTTGAGAGCCAACATGATACCATAAGTGCAAATTTTAACACCTAATTTCATGTGATAATTTGCAGGTAAAACACAGGTGCCctataaatactgtataaaattacACTTATATTATGTGTATAcagtgtatataaaaataaatgaatttcatgttgaTACTTGGGTTTCATCTCCAAAacagatatttcattatatataagcaaatattccaaaatccaaaataacCTAAAACTTGAAATGCTTCTCGTCCCCTGCGTTTCA-ATAAATAGTATTTAGCCTGT

a score=4676
s chr3           158256791 109 + 160039680 AACCTGAAGTTTTTTGAGTCCTTATGTAATGTCATAAGTGGAAATTTCCACACCCAATCTCATGTGACAGGCCACAGTCAAAGCTCAGCTTACTACAAATATTGTAAAG
s HiC_scaffold_1  34141298 109 + 233722169 AACTTAGAACTTTCTGAGCATCCACATCGTGCTACAAGTGGAAAATCCCACCTCCAACCTCATGTGATGGGCAACAGCCAAAACACAGGGTGCTAAGGATACTGcacag

a score=49727
s chr3           158261499 2106 + 160039680 TGTTTCAATGACAGtaaatatatattactaattaattatatattatt-atccttatta--ttttatctagttttaaaaaaca-aatattgccattaaaatgtattttataaaataaGCACATTTATTGTCTCGTTCAAGTTATATGTGTG----------ATAAAAAATTAGGTTGACACAAACAGATGGATTTAGGTTTGCTGACACCTGCTGAGGTGCTCACAGTGCCATACA--CAGGTC--TGGGCAAACACGGCCAGAG-GCTGTACTGTGACATGATCTTGAGTCCTGATTCAGTCACTCCTCTATGTCAGTTTTAAATTGTCTTGGCTTGGATAAAAGTTACCTCAGTTACT----GATTTCTGCTC-----------------------------TATAATCTTTCAGTGGTTATGTGTTCCCATGAAATCAGAGG-GTAGCCTGGCTTACTGTAGTAAGGACATGTCTACAAACTAATTTTCCCATCGTCTGGACACACCTGCCAATGCAGTTG-----CAGCTTTTTTAGATTTT-AAACTTTGATAGTGGGAAATGCAGTGACTTTCTTGGGACATCATGGAAACAGAAGAGTGGCGTTTCT-TTTTTAAAAGCACTTTCATGGCAAGTGCTCTTCATTATTTTAAAAATAAACTTTAGGAAGCTGAATGTTGGTGATATTTGAAGAGCATTGAAAATTTATAAGAACACATTATATAACCACACCAAGAGCTTACAATATATATTAAAGAAGAGAGAAAGAATGATGGCTTGACTTCTTAGAATAGCACATACTTTTCAGAACATTGTTTCGGAGACATATGTGCAATTATGTGAAAATGACAGAAGTCAGCATAAAGCACACCCTGTTGAAA-ATAATGCA-GTACACA-TTGAG--GAACTTTACAAACACACTC-ATAAGTATTCATACCCAAACAAAGCTATACATAATTTTCACAAAGAAATAAAAATCCACTTTTATGTGCACATGAGGTTTATACAAATGGCCTTGCATTCTAGAGCACT--TTCATATTTTGTGTATTTGCCATAGT-AGAATGCACAAGACAAGCCCAGAACATTCAGAAAGATTCATTTTGGTTTTATAGCATAGGTTTTTAATAAAGTGTCACATCTTGCTATTTCCTAGACAGTAAAATGAAATAGAACCAA--TAGTGGACAAGCTTTTAAATTCAGTGCATTCCATTTGTGATAGAAAGATACTTCCAGTGGTATTTGACCAAGCAATATCTTCAACAAAATGGCTATAATTTCTTTCTTTTTCCCTTTTCCCAAAAAAGAAT--------------------------------------AACCCAAAAGTTACATCATGAATATCCCTGTTTGATAGGCATCATGCTTT------------------------------------------------TCAAAGCTTC---------------------------------------------------------AATAA--CAAATATGTCTTATTTCTAATTGTATGTAAGAAATAGGAATTA---------------------TGAGATGG--------------------------------TTC----------------CCACTTGGGAAT---CTGTCAATGTGCAGAATAAGCTCACAATGGAACATCA----GACAGGAAAACTGGCA----CATTCAACCTCTGAAGAATTTGATGGATTA----------------------------GACAGCTCTCAAATGA-----TAGCTTGATCTACTTAAAAATAGCCAAATCATATGCAACAGCAGCCTTACACAAAACACAGGAAAATAAACTTGATGAAGAT--TGGGGTTTTTGGGTTCCTAAAACTGATAAAATTTCGTATTTACTGCAAGTGATGGCAACAGAATATACTTGGAGAAAAA----TTAGATCTCTT-----------GGAATATTGCCGTAAAATTTTAACAAATACCAAACATTGTGTACAGA-GAGGCAGTAAGAAGGCTGCCCCTATTGGCAGGTAGCACACCACAAATGTTTGGTTTCATAACAGGGTTTGGGAGAACTACCTCTCCAAAGTCTACTGGTACCGAAGCTCCTGCTGCTGCC------------------------GCCTCC---TCCTCATCTGTAGGTGCCACTGTACAGTCTCAGGTGACTGGGCAAGGGGAACACTCGGGATCTTCAGATGCTAAGATGAGAAAAATCAATTTCAATGCCCAAAAGATGGAACTCCCGAGGCAGAAGGTGACTATAGTAACTACCATTTGGTTAATATGACAGGGAGGCAGAATGCCAACTAGTTTTATATTGGTTGCAT-TTAAATGGGACTTGAGGAAGATATTGGATGGAAGAACAAGTCTAGGGTTAGGGAAAATATCAGTAAT-GAAACTTAAGGAAGTGA
s HiC_scaffold_1 145635837 2415 + 233722169 tatttcaataaaaacaaatgcatatCA------------GCACTGTTCATGctgattacattttataaagttttagAAAACCTAATGTT-----CAACATGTAACT-ATCAAATAaacacatttgatattttataaaattaggaTGTGTGTTCTCTGAGAATAAAGGATTAGATCGACACAGGCAGTCAAATTTACCACCATTCACAGTCACCAGGA----CACTGTGACAAGCAGTTAGGACAGTGAGCACATATGAACCGAGTATTATATTCTGC--TTACCTTGTTAGCT-ATGTAATTACTTAGCAGCTGCAGTTTTAAATCACTTAAGCTTTGACAATAGTTACTCTAGTTACTCGgtaatttcttttcattaagGAAAGCTACCTTTATCCTCCACATGCAAACTTTCTCTTGTTACACATCCTCTTAAGAACAGAAATGCTACAGAGCTCAGGGCAGTAAT--CATGACAACAAATCACTGT--CCAGCG---GGCTGCCCTGGGCCATAGACTTGAATCACAGCGTTCTAAGACTTTCAAGCCTTAACAATGGAAAGTTTGGTTTTTTACTTGGGACATCATGGAGATTGGCCagcaagattttaatttttaaagccacTTTTCTGTCAAATGTTTTGAATAAGGtctaaaataaatttcaggtAGCTAAGTCAGGGCACTATTTGAAAGATACCGAGAATTCA---GAACATATTATAAAACTACCCTAAGATAACACAATTGATTTGAAAgcag---tagaaatttgtattttgtattcttagaataa-atacatttttcagagtactgttttTGATTGATATA---ATCTATGTGAAAATGACAGAAATCAGCACGTGGCACGCACAGCTAAAATACAATGTACAAACACAACTAAGTAGATCTGTACATTTAGATTTTCTAAGTAATAATGGGAAAGTCAGCATTTACATGGTTTTAACAAA---ATCAACTTCCACTTTCATAGGCAAGTGCGTTTTATACAAAAGGCTCTCCACTTGAAGtcataaattcttattttatatatttcacacAGTTAAAATGCTCACAACAGTGTAGAAATAGTCATAAAAGTGTATTTTGGACCTGTAGTATATGTTTGGTACAAGATGTTGTAGTTTGTTATTTCCTGGATAGTAcaa-gaaatgaaatcaaaatatgGGACAAACTACTAAGCTCAGTGTAGC---TATCTTATAAAAAGATTCTTCAAATTGTATATGAAAAGGCAATATCTctaataaaatgattataaattctttttattttggtttttccaaAAGGGAATTGGGGTGGGGTGAAGGACACATATGCTGTAGTACATTCGGCCTTagatttatataagaaatataccTTACTTCTAAATCCCGTGTTTTAAGTGTTCAAAATAAATTCCTCCCTTATGTCagctgttatttattttgtaaaagtaTCTTTAGGGAGACTCATTTCGCATGCAAATTGAAATGCTATCAGCCACTGAACTCTACAAATAAAGCCAATGTGGTTAAttaacaaatgtgtttcacaacTATGAAATAACTGTTTCACATTAAATTACATGAGATGAAAGGATAGAGAAAGTCAATCAGTTAGTGACATTTCTTATTTTGACCTGGAGCCATCTGGGAATAATCATTCATTTTGCAAAATAAGTTTACAGCGGAACATCATCAGGACGAAAAACCCCGCAACCACATTCAGTCTCTGATGAATTTAACAGCCTACAgaaattctctttatttattgCATTGGGATGACTTTCAAATGACGATTTATCTTGATCTATTTAAAAAGTACACAATTATATGCAACATAAGCTTTATGTAACACGTATGAAA-TAAATCTGATAAACATGTTGGTATTAGTACTTTTCTGAGACTGATAAAATTTCGTATTCATTGAAACTGA---------ACGACACTTGGGAAAAAAATGATCAGGTCTCTCTAGACCAGCCAGGAGTGTCACT-TAACATTTTAACAAAGACCAAACATTTTGTACACCCTGGGTGGTAAGAAGGCAGCCCCCATCGGCAGGTAGCACACCAAAAATGTTTGGTTTCATGGTACAGTTTGGGAGAACTACCTCTCCAAAGTCTATTCGTGCTGATGATCCTGATGCTGCCATTTCTGGTGCCCGAGAAGCTGCTGCCTCCACATCCTCTGCTGTAGGTGTCACTGTATAGTCTCAGGCGATTGGGCAAGGGG-ACACT--GGATCTTCAGACGCTAAGATGAGAAAAATCAATTTCAATGCCCAAAAGATGGAACGCCTATTGTAGAAGGTGACTATAATAATTACCAATTGGTCGGAAGTACAGGGAAGTAGAAAGTTTACTTGTTTTAATGTCATTCCATAAAAAATTGGTTTTAAACAAGAGTGTGTAAAAAGGGAC-AGCATGggaataaaaaaattacatgaaatagaAACT---GGAAATGA

a score=16895
s chr3           158272276 710 + 160039680 AAAATGAGCAGAGGACAGGAACTGGGTG------ATTCTGACAAACTGAACTAAAGCACAGGCAATGGACATTTAGAAAAGGGAAAATA------AGATATACTACTT-TTGGTTGTAATTTGACATTTTGTTGTGTG---GTTATTAGATAATTACCTCTACATATTAGTTTCATGTTAGTATTGCTGCCCTGAGGTGAAAGATTGAG-TTTATTTTAGCCATCCTTCTATTTTCTGCTTGGAGTC-AGTGTCTTCTATGAAAATGGCCAATAAGCAGTTACTGAGTGGATCTCATATTGAATGAACTTGAAGG---TACATACATTGGC--------------------------------------CAGTCTATCATGCAGTAAGTATAGAGTAGTGAACAAGC----TGGGATTTCTCTCCT---------------------------------------GGAGA-AATCTGAGACACTCATCTATGTTAACACAGAAATTATAAATGTGTGCTTGGAAAATTCCAGTGA--------CAGGAGGGGCTAATTTATATTGCAAGGACCCCTAaagaccttttagggtaaatggcatttgatttgagatttgaatgataaaaa--------------ggaggcagagagttccagacagaaggaaatgaataagcaagttagacagaTTTGACAGAGCTTTTTGACTGACTAA-TGTGGGAGTAAGAAATAG---GTCTGAGATGATTCACAGGCTCTATA-AAATGTTATTTCTATTAGTTGAGCTTGGAAATGCTAGACAAAATGCAGACAGTGATGTGGAGGATGAGCCCAAC
s HiC_scaffold_1 145646910 824 + 233722169 AAGAAGAGTGGAAGGTGGTAAGAGGGAGGCAGAGACACTGACAT-CTTAACTAAAGCAGCGATGATGGGGATTCAGAGAACAGAAAACAGACCCAAGAGGGGCCACTCATTAGTTGTTGTTTGATGTTTATCTCTGTACAAATTGCTAAGTAATGGCTGCTA---------TTCGATTAAATATCAGCCTCATGAGGACAAGGATGGgggcttattttctctttctttgtatttcctaCATGTAACCCAATGTCTGGCCCAGAGGAGCCCTATCTGCACATGTTGAGTGAATGCTACAATGAATGAATTTGAAAGATGTATTTGTATCAGTGCATGCTGGACCCCaacagtgtatttttttttttccaacagtgTATTAAGCAGCATGGATCCAGTGCTGAACAAGCGACCCAAGATTCTTGTTCTCAAGCAGATATTTCAGAAAGGGGAGAGGCAAGTCACAGCGGAGATGATCTGTGATACTC-TCAGtatta-cataaaaagaaaaagggggttTTTGGAATGTTCTTGGGATGCGACTGCAGCAGTGGCT----TTTGAGGTGAGGGTCACCAAAGACCTTCTGTGGTAAGTGATACCTAATTTGCCATCTGGATGATCAAAAAGGAGCCAGCCTCTGGGGGCAGAGAGTTCCAGACAGAAGGAAATGAATGAGCGAGTCAGACAGACTTCACAGAACTTGTTGACTGATTGGGTGTGGGAGGAAGAAATAGAAGGCCTACAGTGAGTCACAGGATTTAGAGAAATGTTATTTCTATTAGCAGAGTTTGGGAATGCTGGAAGAAGTGCAGGGAGTGATGCAAGTGAAGAGTGCCAC

a score=28641
s chr3           158290832 1457 + 160039680 AGGCAGGTGCTGAATAAAATCCAGTTAATCATTTTCACAATT-AAAAACTGATCAACCAAGA-------GCTGATAAT--AATGTTAGAATGACTTTGAACTTTATAAGATATGTGTTCTATA----CTAAAATACCT------------TTGAAGATATGAAACAAAATACGAATGAAAATCAAAGTCACCTAGAATTTTA-----GA---------CTTTTATCTCATG--TATTTATATTGGAAAAACAGTTTATACACTTTG------------CTAGATAAACCTTCCCAGCTTTATTAGGG----TTTC---ATACATGATTATCCATTTCTGCACGGTATTGTCACATAGGAGCAGCACATAGCACCACACCAGAGTCAGCCAAGCTCCTAGACAGAGATGTGATTTCTTAGTCTTCATTTTGTCAACAGTGAAAAATGTATTTGTCTACAAA-----------ATCAAAATACGGCATTAGACATTTCTGGTAATAAAATTTAAGGTGATAGC-ATTACTATTTTTGAAGTTCTTTAAGCATGTATCACTACC------------CTCAGTCACATATGTTG---------------GTTTCAGAAGCTAGGACAAG----TGAAGTCTTTTGTTGTCATTTTAATTTGTATTGTATTGGATATTTTTAGAGACAGACATTTCTCCTGTATTCACTATCTATT-TACATTTTATTACAAGTTGCCTGTGCAGCCACCCACAAACTTCCCAGTATTCACCC----------------------------TCATTTGAGAGGA--CTTTATATATTAAGGATCTTATTTGTTTTT-ATAGACAATGAAAACAATTTTTACTTT----ATTTTGTGTTTAATGATTTATTCTATCTGAAAGCATTTTGCTGGCCAAGACTGTCTATAT-------ATTTACAATGCTCTCCTTT-GATTCCTTGACCATGAAGGAATTTTGCAACCCAAGAGCCATGAATAGTCTCCTGCATTTGCTC-ATATTATCTGGGA-----------CTTTTTTATATTTAATTTT--AACTCACCTAAAA-TTATTT-TATGATAATATTATGTGAAGACCTAATTTTATGTTAATTATTATAGAA----------------CATTTA---ATTAACATTTATTGTATA-TAATGAGACCCAACTGTAATCTGCCCTGTCATTCATGTA---------CTGGTGAAGCACTTGGCAGAAGCAAAATAAGATTACAAAATAAGTATTATATCTTATTCTTACCTTCCAAAATTAGCTGGAAGAAATTCGAGGAATGCGTCATTCAGGTAGAGCTGGGTCAGGTTAAGAAGCTGCGTGAAGCCATCGGGTAGTCTAAAAGGGAGTTAAAGTGTTAGTTACTACATCAATGTTGCTATAGAAATAG-TCAGA---ATATATCTTAGAGAAGGAAAACGGGAAATAAAATATGTCTTCAAACTATCCTTTAGTGT--CAGTAATGGAAGAATTTATGGTGCATATAATTTTACAGCTGGAAGTTTTAAAACTTTTACTTGTTATTAAAATATATG------ATCCCCTCTCCAATACTCCTATCTAGAGTTGAAATTGCTATCATGG--AGAGAAGAATCTCAAACTGTTGTTGGC
s HiC_scaffold_1 145667058 1588 + 233722169 AAACAGGGTCTGAATTATGCCCCATTTATTATTTGAATAATTTCGAAGATGATCATTTAGAAAAATGTAGGTGGCAATGAAAGATTAAAATGTCTTAGG----TTTAAGATACAtcttatatagaaaataaaattgccaAGCAGAGCAGctagaaaatattgaa--aaatatgaat-aaaatgaaagttatCCATAATTTCATTCCAGAGTAACCACTCCTTCATCTCATGAATATTCATATTGGAAACATAGTTCATACATTTTGTAGTATATATTCCTAGATTAAACTCATCataggaattaaaaatattttcctaatacAAAATGATTAACTGCCATATA-TGTTGTCATGTGGATGAATCAT------CTACATCA-------TCAACTTCCTAAACAGA--TAcaattcc--atttttcattttgtcagtgATAAGAAATACACTTGTGTATAAATCCTATGCGATATTTGATGATAGTGTGAGATACTCCAGAAATCAGTCACAAAGGTGATGCCTGTCAGTTTTTTCACAGTTTTAGACCCATGGTTCTCTGCATAAAGGGGATGACTCTGTCATCCAATTAGCAGAACTGTGAAACAGTTCCACAAT---GGACCAGAACCCAAAGTTTCTCACTGTCATATTAATTCATATCACACTTATGCTTTTTGAAGATAG----TTTTCATGTATTCACTGGCCATTCTGTGTCTTACTCTAAATTGCTTA---------CTACGATTTTCATATTATTTACCCATTTTCTTCAAGATATTTGTCTTCATATTCATTTagaagaattctttatatattaagtctacaatttatttctcatatagaataaaaatgttttcttcatttatggTTTTAccttaaatgtttaattttctt-------atttt-------aagagtGTCCAAGTGTTgttgatttataattttctttttttgcttttatgctTATAAAGGCATTTCACAATTTAAGGGACATAAATATTTGACTGAATTTCTTCCAGGTCATGTTGtagctttacttatttttttgacaTTTAACCCTCGAATTTATCTAGAACTTATTTGTTTACTGATCTTAAGTGAAAACTTAACTTTAC-TTCATTTTTGCAGAAGTCAGATTCATTTCTGCATTTACAGAGTCTCATCTGTTGTATAATAACGTGGCCCATCCTTAATC-ACACTGTCACTTGTGAAGCCTCATCTCTGGCACAGCGCTTA-CTGAAGGTGAATAAACTTGCA---TAACTTACATTTCTTTTGCTTACCTTCCAAAATTGGCTGGAAGGAATTCAAGAAAGGCGTCATTCAGGTAGAGCTGGGTCAAGTTTAGAAGCTGCGTGAAGCCATCGGGGAGTCTAAAAAGGAGTTAAAGTTTTAGCCATTGCATCAATGTTACTATAGAAACAGAGCAAAAATACACATCTCTGAGACAAAAAAT-AGCACTGTAATACATTTTCCAACTCTCCTTTGGTAGCACAGTAATGAAAGAACTTACTGAGCATGT--TGTTACAGC--------TTGACAATTTGACTCATTATTAAAGTAAATGGCAGTCACCCACTTCCTTGTCACTCTACCGAGA-CTGATGTCATTGTTAAAGTTAGAGACAAGTCCC---TTGTTGCTGGC

a score=25884
s chr3           158302568 1169 + 160039680 CATTCCCGGACCACG---CTGCTTCAATCTTTTCCAAGTACTACTA--------------AGATGTCAGTAACCTTCCCAGACTTTAGTTTTACTTCCATTTTACCTGAATGTTCTGGTTCAGGATTTATCTCACTCATTTGCTCATGATTCAATAGGCCTCT--CACTCCAGAAAGTATTTTAATCAGCAACACAGCCACATTTTTATTTACC-ATGAGATTTCTTAACTAACAGATCTTGAGCCACAAGCATCATTTCTCCGATGCTAGCACATTTACCATTCATATTTCCTCATCTATTGCACCTTTAGGCTTTCC-CTATACTCTTTATAGTATCTCTGGGACCCAAGTACTTA------TTTGTAGTAAGGCCCAATTTCTTTGGTGGAGACACTCAACTATTAAAGCATTCTTTGGCACCTTTAAATCTTCCAACGGTTTTGAACTTCTATTGGGTCCTGGATGCTAGTTTCTTATCATGATTGCAACTAACAACCATTTCCTTGATTTTTGACTCTCATCCATGGAATACTGCTGAGAATTATGGAAAATCAATGGCA--TGGTTGCTCAAAGTAATGCTATCTTGTGCCAGTTGGGCCTTTATTCACATTCATAATGCTTTTAATTATTTTAATGAAACACAGATCTTG--GTAGCTTTTCTATTATTCTCTTAACTATGAAAGTTGATGTTACATCCAAAACT--ACTATCATAGAAGTTCCATCTAG----GTACACTATATGCCAATGGAATTGCAAATAAAAATATGAGTAAAATCTAATTATTTATACTCACTTAGAAATGGGATTGACACTGGCTTCAATTATGGTTAAACACTTACAGCACTTTATGTTTTCTGGAAATTCTTGTACACCTAAAAGGTTGAAAAGAAAACAGTGATATGAGTTCATGAAGATATCCCAGCAAGCATG-TTGAAGCTCTGGCTCCTACAGTCGAAATAAACAATTAAAACCACAAGTTTGGGTTTAAACTCCATG---TAGGGCAAACATTCAAGCAGAAATGATAACAAAATATTATAAAACCACACAGAAGCATAAACACAA-----TATTTTTAATAA-AATTGAAAGTTAAATAATGCTTTAGAATAGTATTAGCTGGAAGTTGCATATAAAGTTAAGGACAATTGTATTTG----------------GCCCTTTATCAACTCTCAGGAATGAAAATAAAAGCAGCTTAATGAT
s HiC_scaffold_1 145682810 1172 + 233722169 CATCCCAATACCACTGATTTGTTTGAATTTCTACCAAATATTATTATAGTAATACTTGGTAAGTTTCAGCAGCCTTATTAGACAATG--TCCATTCCCATTTGACTTTAACATTCAGGTTCA--------------CACTCACCCAGGATCCTGCAGATTTGTGTCACAATGTCACACCCTCAACTCTCCAACACAGCCTCCACCTCATTCACCCATGAATCGTGTTAACTAG-AGACCTTGAACCCCAAGC-CCTCTTTTCTGATTATAGTGTTACTACTATTTGTGTTTTCCGCCCTACACTCCTCACAGGAttgcttctttgcttttgttgtgaTTTCTAGTACACAAGAACTTCCTGTGTTTAGTTGTAAG--------TCATTAAAGTATACAGCGA--TTTTAATGTGTTTAGCGGTATCTTAAAACATTGTA-CTGTCTTAAACTTCCATGAGGTCTTTGACGCCAATTTCTCACTATGACCATAATGAATACATATTTCCT-GAGTTCTGGCTCTCAGAAGTGTAACATGGCCTGAAACTACAGAAAACTAGTGCCAGTCGGCTGG--GAAGCCATGCCGCATTGCACCAACTGGGCCCCCAGCCTCA---GTGATGCTTTGAATCAGTTATTGTGAATTCTGATCTGGTTATACTTTTCCCATTACCTTATTAAATACTATA-TAAAAGCTAcacttaaaatagaatttttatatcaattttatcTACTGTCATACACCATTATCCAATG------CAAacataaacaaagataaaatttaatcatttataCTCACTTAGAAATGGGATTGACACTGGCTTCAATAATTGTTAAACACTTACAACACTTTATGTTTTCTGGAAATTCTTGTACacctaaaaaagtaaaaaaaaa-----------agtacatgaaaatgtTCTCACAAGTATTCTCTAAAGTATAATTATAACATTATGCATAAGCAATTAAAACTAGGAA--TAAATATATCATCTATGAAATAGGATAAACATTTAAATAGGAATACTAATATATTGTCACATA-----ACAGATTCATATGTAcaggtatttttttctaataatatttGCATGTTAAATTATATTTGCTGATAGTAATAGCTGGATACTGAATATAAAATCAGAGACAATTATATTGGCATGAGATAATTCTCAATTctttagtaatttaaaaaaataaaaataaaaggaatttagttat

a score=31609
s chr3           158310025  960 + 160039680 GGTTTCATGTCCATACAAAGACACT----AGAG---------CAGTTACCGAGCTGTGGAGGACACAGGAGATGCAGTTTTGTTTTTCATTGTCATGAAGCTATTTAATGGAGCAAAAGATACTGTGAA------TTTATTTGAA--CCAT---CGTGGGCAGAAG-AGAGTCTACAGACAGGGGAAGTAGACTTAAGATGCAAGACAGTGATT-------TTTGGTATGTTATACA-----GTAATG----AAGTAAGGAATTTTATAGGTCAGGGTACCAACAAGCACAATTATTA-----------------------------------CATATTGATT-------ATGAACACATGCTGACATTT-CTCCATCACCCATTAAAAGCATCCCAAGGTA-ACTTCCCTGAATATTTACAGTGCAGACAACTGGGGTTTCTCTATCTCTTTCAAAATCCTCAAAGGTTTAAAGATTTTTAAAATCCATTAACT-----------GCTTCCTCTTGGGAGTCTGGAACAGA-GAGTTCCCCTTTCTTCCTGCAGATGGAGAATATGATTTACC--CCATGTTTCACGAGTGCTTCAGGAAGGGGTGGAATAATTGGCACATCAGTAACACACATAATAAC-CCTTCAACTATGATTGCCTCTCATTACAACTAACAATAGTGATTTTGCTCACCATGGTGCTGCACACATCCACTCATGTATAGAAGTAAGTTTTAGAGGATGAAAGAAAAATCCACTTAATTGCTGGAGAATTAGGAGGCACTTTCGAATTAATTCATTTTCATTAAAGTCCTTAGATTATGGTGTCACTGTCTCTAAGAAGCTATGACAAATCAGCAATCAGACTTGAAATAAAATCACTGACTAATTAAACTGTATCATTCGTTAGCTAACTTCACCATATAAAACAA-TTACTCTACTATGGCCATGCATCA--GCTCCAAGCTAACTTAGACTATTTATTCAGACATCACCATATCATGAAATGCACT-GCTCTTGA--TTTGTATAGATTTTATTTCACTACTGAATTCAGAAGTGAGG
s HiC_scaffold_1 145695404 1051 + 233722169 GATTTGATTTCCTGATGAAGACATTGGCAAGAGTTAAAAGTTCAGGCGTCAGACTGAGAAGGTGGTGGGAGAAAAAAGACAGGCTTCTGTTGTTATGAAATCCTTCAATGAA--AACAGACACAGTCAACTTCAGTTTATTTTAATACTATAAGCACAGGCAGAAGTAGACTCTGTAGAAAGGGAAAGAAGCCTTAAAGAG-AAAAGAGTGCTTGTAATTGTCAggtaaataatacattttagcAGTGTTGAAAATGAGACATTTAGTAGGG-GGGAAAATAATAAGCTTTACTCTTAATAAGCAGTCTAATGCTTTGCCAAACTCCGAACGACACATTTATTCATACCGAGAACTGCACGGTACCATTTGCTACCTGGACCATGCAAGATATCTCAAAATAGACTCCCCTAAGAATGTACAGTGTA-----CAAGAGTCTCT---GCTCTTTCAGTGTGCTAAAATGTGTGCAGATTTTCAACATTCAACGGCTTACTCATCTCTGCTTTCTTAAGTGTGTTTGAAAGAGACAAATTTTGTCTCTTTCCTGCAAATAGACAAGATGATTTATCTTCAGTGTTTTGTGTTTATTGGGGGAAGGGGTGGAATAATTGGCAAGTCAATAAAACACATAATAATGCCTTCGACTCTGATTGCCTTTCATTATAACTAACAATGGTGATTTTGCCCACTATGATGCTGCTCAAATCCGTTCATGTATAGAAATAAGTTTtagaggatgagaaaaaaattcacttaATTGCTGCAGAATTAGGAAATGCTTTTGAattaattcattttcattaaagCCCTTAAATTATAGTTTCATAGTCTCT--GAAGCGATGACAAATCAACAATCAAACTTGAAATGGAATCACTGCCTAATTAAACC-TACCATTCATTATCTTGCTTTACCATATGAGACAATTTCCTCCATTCTGGCAATGTGTAAACGCTACAAACAGGCCTCTCCTATTGATTCAGAGATTATAATATCATCAAATGCATTCATTTCTGAAGCATGCAAGAGTTTAATTTTACTACCGATTTAAGATGTCAGG

a score=60702
s chr3           158314359 5947 + 160039680 [encoded data, 6634 characters]
s HiC_scaffold_1 145699910 5926 + 233722169 [encoded data, 6634 characters]

a score=21800
s chr3           158352251 1226 + 160039680 TGTTAAAAATGAAGTAG---GTTATTTTTGAAGTAAGCATTAAATATTCCCTAACTTTGAAACATTTTATAAATACCAAAATTCATAATCGCATGTACAAACAACCATTCATATTTTACTTTGGTTAGCACATTGAAATATTTAAT--------------------------------AAACTTGTTTTGCAT-ATTGAATGCATtttatttatttatttacatcccaa----------------atgctgccctcACAAATGCATAAGTTCTTCACAAGTAAATGT-CAAGC--TGACTGTTCGAGCTA-GTGATTTACTTAGGTAACTGT-----TCCTCTAACCCTGAATT--TCTTTGAGGTGTGGCTTTTGT----------------CACTTCGT--AGTCATT---TAACAGAGAATGAAGTCATAGGAGTCCTGAATTTGCT--------TATAGTAGCAGTGTGCATATGTAAAAGGTTC-ATACTTAAAACCTTTATTGAAATATTT-TTACATTAAAACCTCACAAATTCAATGTTTTCTTTCTTTTTC---TGCCCATGTTAGGTAAGCACTACACCAAATACTATTCT----GTGCATATAGTCTCTTTATCATGTTTGTCAATATAATGTAATGCTAGCTAAATATGTTAGACTCAAGATGAATAA----AGGT-TTAAA-----ATAATTTTAACATATCA-----TGAATTTATGCTTTAAAATTATATCACATTTCATATTATCCCTCTCTTTTCTAAGCAAAAACA------CACACACACTGTGTTATTGTGTTTGTAAGTGGGGAGCCCCAGGGTTTCAGTTTATAGACTTGAAGAACTCTGCAGCCCAGCTTGTTAGTTACCAAGATGAAAGGCCTTGCTGTATTTCCTGGATGGAAGGCCGTAGCCATGCATCAAATACCATGATAGAGGGATGTACTGTGTCATGTACTACTGTGACAGAAGTCTGTTTTGTGAGAGGCAGTGATGCGTTAATTACTAGATGGAAGGTCATAATGACTCAGTTACTAGGATTGAAGGAAGCTTATCTCCATTCTGAATCTTCGCATTAGGAACT-TGAGAT-----TGACAGTGCGTCTTTGATTTTTCAGAACTCACCTTAGGTAGCTCCTCAATCTGATTGGCATCCAGATAGAGCTCTTCTAGTGTGCGTTCGAAGTTGAAGACCTCCTTGGGCACCTGTTGCAGGCTGCAGTGGGAGTAATCCAACACTGAGATGATCTCTTCCTCTCCACGGAAGCAGCGGCATGGCACCAGGCGGCCAATGAGCTTCCGTTTGGTGGTCATCTCCAAGCACTGCACTGG-GAGAGA
s HiC_scaffold_1 145737745 1222 + 233722169 TGTAAAAAATGAGTCATATTGTTGTTTTTGAATTACACACTAAATAGTTCCTAATTCTGAAGCATTATGTAAACACTATAGTT----------TGTGAAAATAATTACTCGTACTTCATTTCGGTCAGCACACTGAAATATCAGATTTCCTCAGTGAAGTTCCAGTTCTTATTGTCAAAGATTCTTTTTGTGTTActgaatatttagtattttttttagcAAAAGCGAAGAAAACATTATATGATATCTTGTCCTCTCA---GTTTAAGTCCTTCACAGGTAAAAGTGTAAGTGGTGACCACTTACACTAAGGGATTTATATAAGTAATTGTGAGGATCCACTGACTTAGAATGGACCTTTCTGTAGTGGCTTTGGTGTGCTTTCGCTAATCTCTCGTCGTGCAGTCTTTCCGTAACAGAGAAGAGGATGATGGGAGATATGGTGTTCCTGCCAGTGTTACAAGGACAGTGTACATGTGTGGGAAGTTTGATCATTTAAACCTTCGCTATAACTTTCATTAGCTATGTGTCACATAAATTCAGGGCTACTTTTAATAATCACATACTTAAATCC--TAAGAACAAAAC---ATACTTTTATAATAGCGCTAATGGaacatg---catgtgtgtttgtgtaaa--------aGC---ATTTCTCAGATTTAAAACAGATAGTACGAGGTATTAAAGCGACATCACTGTAACATGCAACACACTGATTTTCAGTTTGAGAGTAGTGTcagattt-------ttcctttattttctaagCATAAGCTGTTTATCGCA-GCACTGC---AATGTATTTTTATGGAGG-------------tcactttaaaataacaaag-----tgtagtcca------------------taaaataattttctttggtttgt-------------taTTAATATAGCACATGAAATTACAAATGGAC--------TCATGTTAAAATTTGACAAGAACAT------TGAGGGG-AGTTAT-----AACAACCCCAGTGACTGCCA--GCAACCCAGTTAACA---CTGA--------------CATTCTGGGGCGTCTC--TGGAAATTATGGAATCCTCATGACAGCGTGTCTCTATGTTCTCAGAAATTACCTTGGGGAGCTCTTCAATCTGATTGGCATCCAGATAAAGCTCCTCTAATGTCCGCTCGAAGTTAAAGACCTCCTTTGGCACCTGCTGCAGGCTGCAGTGGGAATAGTCTAACACTGAGATGATTTCCTCTTCACCCCGGAAACATCGGCAGGGCACCAGGCGGCCGATGATCTTCCGCTTGGTGGTCATCTCCAGGCACTGcactggagagaga

a score=15127
s chr3           158361636 900 + 160039680 tttttGAAAGGGATGGAAAAGGTCAAAAAGAAAATAAGAATGTGTGTCTTTTGGC-AAGACTAGTATAGTGTGTTTCTCTGAAGTCAACGATAA------CTTCTTTTCTGGGTTCTCACAGCCCAGAGCAGTTCCCTTTTAATTAAATAATGTATGTTTTCTAGTCTGAGTTGAATCTATCTATGGGGGACTTTTTTTCTTGTCTACATTAATGGCATGTGGTCGACAGTCACAGCCTCTCTTTGAATACTCTAACACAAATAAATAAGCAGCATAATTTCCTGGACAAGTCTAATTCAGGTGAAACCATAGGGAGATTCTTCTTGCTGTATTATGTAAATCTAATATGAATGAAAATTTAGGTAAAAAAGAACTGCAGTCACCTGAGAATTATGTATACCATAGTCAAAAGTCAAAAGTTAAGAATACGTGTGCCCAATAGGCGCCTCTTTATTCACTGTAACCTCATGCCAGTCTCTTAGCTGATCTTGC-----------CTCACACGCCGTACCTAGAAAGATG-AGGGCCAAAACAGGGCTTTGTCTTTCCAAGGTTTTCTATGGCATACATGCTGTTTTTATTCATCCA----CACAGTCTTGCATTTTTCAAGTGACAAGTGTTTCTAGTTCATCCTCTGGGAAGCATTTTGCCTTACTAACTGTGCCACAGGGATATGGAAATCTGCCAAGCTCACTCCACATCCTACTTAGAAAGAGGCATCTTTAAACTCA----TTGCACTCAAGCACATCTCTGAAACCTGAATCAAGGGTCATCTCCATGAGGATTGAGGA------TGTGGAGTGCAGTGCCAGAGGCTTGTTTAGTTTTTGACTGTTGACATGAGCACACTGAAAACCTAACT-AGATCTGAGGGTTAATTTTCATCTTACCATTATAATACCTGAGTTCTAAATATT
s HiC_scaffold_1 145746012 878 + 233722169 TTTCTCCAAGAGACTGAA--GGGCATGAGGAAAAGAAGACTGCATTTCTTTTGGTTGAGGCCCTTCCAATACATTCCTCAGAA-TCAAAGAtgagaacatattttttttttttttgtcatggtaTTGTAtggattcctttttctcttgaaTCAAATGTTTTTCAATTTGAATTGAACCC--------GGG---TTTCTCTTTAGCTACAGTCACGATGGATGTCAGGGACTTAC---TTCCCTTTCAACACTTTCACACGGAGTCTAAGGCAGCTCA--CCACAGGGCTTGCC--ATCAAGACATGACCGCGATGAAATT------GCAGGAGT-TTCAAGTTCTCTTCCATTGATAGcttaaatcaaagagaattttaaCCACTTGAGAATTACTT---CCTCAGTAATTGACTCAAACAAAAGAACGTCCATATCAAA---GCACCTGACTTTTCACt------tctttgtattctctaaaattgtAGAGCAAAGTCAGCCTCTCACATCCCATACCTGGAAAGATACAGGGATGAGGGAAAGTTCAATCTTTCCAAGATTTCTTGTGACAGATATTCTGGCTTTCCTCCTTTGTTGGCACTGTCTTCCATTTTCCAAATGACAAATGTTTCTAATTTATTCACTCGGAAACCTT----CTCCCTAAGAGTACCACAAGGCTATGGAAATCTGCCAAGCTCTCTCCATCTCCAACTT--caagaaatatctttaaaatcacTATTTAACCTCCAGTATGTCTTTGAAACCCTTATCAGGACCAAACAT--TGATGGTTCTGGGGTTCTCTGTGGGGTCCAG-----GAGACTGCTATATTTTCTGATTgtcataatgatcacatttcaaACCTGCGTAAGTTCTGTGGGTGTGTTTTCATCT---CATCACAATATCTGAAATCCTGAAATT

a score=43515
s chr3           158363609 2140 + 160039680 TGAGAAAATAGCAGCAAG-ATAGTGCAAAGTAAAGCTCAATATCAGATTAAAAG-ATCTAAACTCCAGGAGAAAGTTATGATTCAGTAATAAATTGTTCCAGCT-ATATTTCTTAAAAGACTTTGGATTCCAGGAAAATGGATAATATCATCTAAGAGTTAAATGGAGAAATTAACTTCTAAGCCTTATGATATCTTTCAAGGAGCTAGCCCTTCCAA---GGCAAAACTGTGAA------TTTCTGTCCTAGCATTCAAAGCTTGCTTATATGGAGGTACAGAAAAGACAGCTCTGTCAGAAAATAGCTGGTT-TTTGGTAAAATCTTGTGTCTGAAAAGAACTTCAGTTTAATGACTTTTCCAATCTTTGAATAAATTACTCAGGTGATGTTCTTAT--TTGAATAACTCTTGAGAAGTCTT-ATGCTGTAGTACCAAGTCAA----GATGATG----------ATTATTAAGAAGTTATCAAGAGAAAGTCCATTG---CACTATGATCT-TTATGAAGTCAGAGACATCTGA-----ACTTTGTGTGAC------AAATACTTTTCTAAATAAAATTTTGAGTATATAGATGATAATACTTTAAatatatatatatatgtacatatatatatatTCTTTCTGTGGAATGTTCCATATCTTCCTCTAT----TGGAGTAAAAGCTTCAG-----AGCTGGGAAGC-CTTTCAATGTGGGTTATTTTATCCCATTGTTTGCACCTTTG----TGAGAATAGGACCCTTCTTTCAT--GATCTCCTTCACAGAGCAGGGTAAAATGTTGGCTTTTTAAAAATCTTGTATAAATTACTGAAAGTAAGAAGTTTCAATGATATTTCTTGGTGTTTCATTCT-----TCAGCCTAACT-AGAATTTTTTGATACTGCATATATTTATTAGTATTTTAATTAATGCTTGTGACAGTTGTATTTGTGCCTTCAAGACAGTTTGATCACACATTACAATTCTGAGACTCACCTAAATAAACAGGGCTTGTAGTGATAATTTTTTTAATCAATTAAAATGCTATGGGTATAAATCTAGGCAGTTACTTTATAATTGGGAAGATTTTAGCAGTCACGAAATGTACACGCTTGTCTGGTGTCACCCTAAGGCTAAAAGGGGAGTTAAAACAAAAATTAATTCAAGAAGACATCTACAGAGAAACAT-AGGCATAAAAAATTCAGCCTCAGTCTAAGCAACCGATA---GAAAAGCTCATGAAATCCGAAAATGGCTGAATCAGA-GCTCAATTTAAAGACGAAC--AATTGCTAGGATACAGAATT-------CACTGTAACTTTTTGATATGGGA--TAAAAGTGCAATTTCAAGAAGCAATTTACAATATTCTGAATATTTAAGTAACGATCTTGATTCATTTTGTAAGTAATAAATGCCAGAAAT---ATTTGGTTCATTCTTAGTGAAAGAAAATTGTTACTGAATTAAATTATTTAGAAGCTGATTAAAATCCAATATATTTTGAGAAAATTAAGAGAAT-ATGACAAGGAGAAAAATGCCTTGGAAACAATGGAAAAGGTATTAAAGAATGGAGATA-GCCTCTAGACTAAAAGGGGTAAGCGCAAACAGAAGA-TCCTGCCAGT-GGACAAATGTGTTCCATGTAACTGTAGCACTA----CAGGGCTAATCAGTCTTAAAATTCATATGAGATGTACATA-AACTATTCACCAGCTCCCTATTGCTTTCAC------------------GGTAAACCACACAGTTTTTGCCACTGATTCCATACCTGAACATAGTTGTCAATCTCCTTTTGAACAACACCCACACAAACTCTACA-CTCCCTGATGCTCTGTGTTCATGCTTTGCTACCTCTATCTTGTTCTGAGGCCTTCTG-----CCTACTCACCACCTCCTGGGTAATGATTCTAAGGAAGAATAATCTTGTTCAACTAAGGCTAAGGGTTAAACTAATATATAAATTTCCTCCCAAGTACATTTtgttgagagttatagaactgtctcctgaaa---atatgtttacctcccaatcttgggacatcaa--actcttaccttatttggaagacagaattttgtagatgtaattt-------tgtgattggttaattgaagtagcata-gaccctcctccaatagtaccagtgtctttatTGACATAAGTCTACATGTAAGCCTGTGGAGGAACAGGATG----GAAGATGCAC-AAGGAGGAGAGTCATTGACAAAACAAGGA
s HiC_scaffold_1 145749824 2155 + 233722169 tgcaaatacaGCTGTAAGGACAGTACAAAGCCAGTGTCAGTATCTGATTAAAAACAGCTGAAGTTCAAGGGAAAGTTCTAATACAGTAATAAAGCATTCCAGTTCATGTTTCTTGAA-GAATTCAGCCATCAGATAAGTTTCAAATCTCAGCCAAAAGCAGCATGAAGAGACAGATTTCCAAGCACTGAGGTA-CTCTTAAAGACCTAACAttcttaaaatgataataatttaaaGAAGTATTTCTA-----------GAAGATTGCTTCTAGACACACAAGGATTGGAGCAGAATATCAGAGAG--GCCATTTATTTCGTAGGCTCTTGTGTGTGAGAGGTAATGCA-TCTAATCACTTATTTGATTCTTGAACAGATTACTGTGATGATGTTCTTACAGTTTAACATCTCTCGAGAAATTTTTATAATGCAGTACAAAGTAAATGAGGATGGTGTATGTTCTTAATGAGCAGTGAGCTATCAAGAAAAAGATCAATGATTCAGTACAATCTACTGAGAAGTCCAAGATGTGTGTCGTATATTTAATGTggtttaattaaatattttatttaagaaaaatcaagGTATGTAAAAGATTAGGAATTAATTTTGTAGA-------------------AGTCTTTTT------TAGCCCATGCCTTCTTCCAGCCAATGTAGAAGGTGTCTTAGGCACAAGATGAAAAGCATTTTCTATGCAG-TCGGCTGACCAGACTCTGTGATTCTTTGCCTTTTGGGATGAGGCATAACATCAATACGGTGCCCTTCATAAGACATGATGAAAGACC--CAGCTTATCAATCTGATATAAACAACTCAAAGAAAGCACACTTAATGCCATCTCATGCTGTTTTATGCTGTCTTTCATCATAACTGAGAAACTTCTGACagtttttgtgtttattaatattttaattaatgctGCTGATGGTTATTCTTGTGCCTGTGGGAGAGGAAGAACAAATGCTGTAATTCCTAGACTCAACAAAATAAACAGGGTTTGTGGTGATAATCTTTT-AATCAACTGAGCTGCTTTGGGTATAAATTTAGGCAGTTACTTTATAATTGGAAGATTTTTAAGAGTCGTGAAACATACAAGCCTGCTTGATGTCACCCTCAGGCT--GAGAAGagttaaactaaaaattaatttcagacGCTTTCTGCAAAGGAAGTTCAAGCAGTGAGAATTCATTTACAGATTTAACAATCATTAAGTGAAAGGTTTATGAAAGCTTAAAATGACAGAATCAGAGgctcattttaaaactgaatggGACTGTTAGGATTCGcagttgtttttaaattgtcaattgttgaTAGGGGaatcaaaaatacaattttaaacagCAACTTAAAGTAGTctgaatatttaaatctttatacTGTTTCA-CTCGTAAATAATAAATGCCATAAATGGAATTTGCTCATTTCTAAATGAAAGGAAATTGTTACTGAATTAAATTATTCAGAAGATGGTTAAAAG-CAATGAAATTTGAGAGAATtaggagaataaagtcaaaatccaaagtttctagaaaaagctG-----------AAAGAAGGCAGATGCGCTGTTGGGATGAAAAGAGCAGGCTGAAACAGCAGAGTCCTGCTGGtaggaaaaaaatctactttGCAAAAGTCACACTGCTATCAGAGT--AACACTTCTAATATTCAAACCTGA-ACAGATACAACAGTTTTCAAGCTTCCTGCTGCCTTCATTCTCATCTTGCACATTTGGGCAGGAAACACAG-----GCCTCTGATCGCCT---------------CCAGTTTCCTCGGGCATG----CAGCACAAGCACTGTGCCTCCCTGTCTCTGTGCGCTTTTG---TATTTCCTGTGTCTTCTCCTGAGCTCTCCTGCTGGCCCCACTCA------ACTAGATTATTCTCCC---------TTGCCATTTTCAACTTAAGTTAAGGGTTAGCCTCATGCAAAAACCTCCTCCAAACTAT-CCCTGCTGTGGGTTGAATAAGGTCCCTCTGGAATTCATGGGCTGAAGTCTCAACCTCCAG-TATCAAAGAATGCGACCTTACTTAGACTAAAGGTCATTACAGATGGAAATGACAAAGATGAGAT---CCTACTAAAGTACGGTAGGACCCTACTGCAATAGGACTAGTGTACTTGTG---AGAAG---------AAGGGTGTGCAAAAAAGGGGGGATCTGAAGAGACACAAAAGAAGACGGCCATCTACAAGCCAGGGA

a score=22676
s chr3           158374178 1011 + 160039680 TAAATATAAACACTATTCAG---TATTACTGAAAAAG-TAAGCACAAAGGCCTATAAGCAAGTTAATTGACTCTCTG-----------CAAGGCTCAATGCAATCATGTGCTGTTTTA----GGATATTTTCAGTGAGTGTATACAGCTTCAGTCATTGTATAGCTGCT-AAGTCAGCT--GAATGGAAGAAGTGGCCTTCAGCCATTCAGACACTAGGCTTTAGAAATA--TTCCTGCAAGTGTTATGCCT----TAGTTATAC------------------CCTTCCATGATA---TCTAGCTTTTATGCTTCCTGTTATTTTACCTTGTCTTCTGCTAGTTC----------CATATGTTGAAAACTGTATGGTTGCTGTTAGGATAGTTTCTAACCCAACTGGCTACCCTTCACCTTTCATTTTCCAAATTGGAAGAGATTATACAGTAGAAGCAACTTGATGTTCT--------TTTTCTTTGGCCTAATGTGA-------AATATTCTTTCCCACTAGCACTGTGTCTCCTTTGGTTGCCATAGTGACCAACTTCTGCTATGATGCTTTTAGCC-ATTCTCTTGACCCCCTTTTACTT--TTCTACACAGAAT-TTGCATTATA-CCAGTAACTTACAATCTGCTATTTTAGGCATAATTACAGTATGATTTTCTTCTCTAAGGGATTTCTTG-TTGGGCATTTTTTCCTAGGTCCTGTTAGTATCCACACTCTTAAAGATTCCTTAAGAACCTCTTCCTGCT--TCCATGTTTTCATGAGTCTCCAGGGTCTACTCATACATTTTACATCTCAAACTGTTAAGATTCAAGTTTGTAATTCCT-ATAGTTTATTAAGTAAAGAAGTTTAGTTCTTTTGTGTCTTCTGTGCCTCTTTTTCTTTCACATAAACTGCTTTTTTTTTTTTTGTGGATTGGTAGTTGCCATTACAACTAACAGA-CTGTTGCTCTGTATGTTATTTCA--AACAAAAATAG-------TCTTCACT---TCTCTCAAAGAGGGTGATATCACCTTCCCCTAAGCAAATAAGTACAATAAGAGTCCATGAATTAAACTAACACTATACACACTAAAG
s HiC_scaffold_1 145757813 1074 + 233722169 TAAATGTAAATACAACTCAGAGTGATGACTGAAAAAACTGAACACAAAGACTTGCAGACGAATTAATTAACTTCCTCAGAAAGTGCTCCCAATCTTATTACAATTCTGGGTGCTTTGATGCTGGATGCATTC--TGAGCTTGGAGAATTTAAATCATACTGTGGCTGCTTAAATGGGCTTGGCAGTGGAGAAATGGCCTCTAAC-ATTCTTTTCCTGGCTTGCAGAAGTCATTTCTTCTAAGTCTCAGGCTTACTGTAGATCTGCACAAGCACCGAGGCCACACCTCCTACGATAAACTTGAATTACTGTGCTTACCTTCACGTTGGCTTTCCTTCTGCTAGCCCGTAACAAGACCACA----AAAAGTTTTGTGATTCATACTACGGCATTTCTCAGCTCTAGTGCCTACCGCCC-TCTTTCCTCTTCCAAGTCAGAGAAGAATATTCAGGGAAAGCAACTGGCTCTTCTCTCTGGCTTTTACATCAGCTCAACCTAATCTTTACAGTGTTCTTTCCGATTAGCATCATTTCACCTCTGGTTACCATAGCGACCAGCTACTGCTCTCATGCTTTTAGTCAACTCTCTGAacccttctttattttgttcaataTGAAATCTCATATGATACCCAGGAACCTGAAAATTGCTGTTTTTGGTGTAATTGCGGTCTGGTTTTCCTTTCCAAGAGGTTTCTCACTTGGCCATCCTTTCTGAGGCCGTGTTTATTTCCAAGTTATTAAGAGTCATTCAGCAACTTTTTCCTGCCTATCTATGTGTTTCTCAGTCTCTGAGGTCTActtatgtagtttattttttaagctgCTGAGActtaaatttgtatttcctgaTAGTTTATTGAAcaaaatgttttaactct--------tcctgtgttttatttttcctcacacAAACGACTCCT----------GGGAGTGTC--TTCCCTTGATCTCTGACAGACCCATTAGTGtg---attattttatgaataaaaatagatttcCTCCCTCACTCCCTCCCTTAAAG-GGGCACTATTTAATAGCCTTAAGCAAATGGGTCTCATAGTAGTCTACTGG-TAAACTAGCACTTTGtataataaag

a score=68316
s chr3           158389738 5610 + 160039680 [encoded data, 6173 characters]
s HiC_scaffold_1 145770834 5441 + 233722169 [encoded data, 6173 characters]

a score=7273
s chr3           158410267 365 + 160039680 AGATTTCCTTAACTAATATATATTGAATTGAATTAGCTGTTAAAATTATGGAAAGTTTTAGAATATTTAAAAT-ATGATACTCAACAAATAAGATGTGAACTTAA---------AACTGAACTCTCCCATGGTGAATCTGAAAAA------TCTCCCATTGGTCTCTA---CAGAAAGAAGCCAAAGCACAAACG-------------------TGCCATATTGTATTCATTGACACctctctctctctctctctctctctctctctctctctcCTGATTGGCTTAGTTACC----CATCTCCGTTATTGACTAACTGCAAGGCATGAA----CTTTTTCTGTCAGTCACCCTACCC-AAGACCTTTTAGAAGT-TTGAACACCAATGACTTCTA------TGCTACTTCCTTGGTTTC
s HiC_scaffold_1 145781595 390 + 233722169 AAATTTCCTTAACTAATGTATACTAAATTAAATTAGCTATTCAAATTACAGGAAGTCttagaatatttaaaacaatgataTTAGGAGAATAA---GCAAACctaatttaaaagtaattaaacTACCCGTAGATCAATCTGAAAAACAAAGCTCTACCACTGGGATTTAAGCAGGAAAGGAGATAAAGTAAAATTGAAGGCCAGGAAAATCAGTATCCTGAAAAGGATTCATAAAA--------------------------CTATCTAGCCTTCAAAGCTGGTCTGGCTCCATTGGTGTCCCAATTACTAACTAATTGCAATGTCCAAAAGCCTTTTATCTTTCAATTATTCTCCCCTTAGACTTTTTTGCAGCATTTAACACTGCTGACCTCTCCAGTCTCGTTGCTTCCTTAATTTC

a score=55636
s chr3           158411462 3516 + 160039680 GTCTTCCCTTCTCTGTCACCACCTCTTTAGTTTGGGC-TCTTACCATTTACACCTAGTTT---CAAGTCTCAACTTCCTGGTTGCAAACC-----CCATAACCCCAACAGTCTA--TTCACATCTGCCACCTACTATTTTCCC-----------TTTATTTGAAGAGCAATTCTGATTTTAGTTTCCTTCATGCCTTCTAAAAATCATGGTCTTCTTT--AATTATTTCTTGATATGCGCA---CACAAGTATTTACAAGCATACTTTCACCA--CTCCCCCCTTAAATATGAAGGTTGCTTAGGTGAACTGTATAAAAAGACTGCATTTTAAAGGTA--TTCCTCCACATCTCTTCAAACTGTAAGAGGTATTGCTTTATGTCAGCCCA--TTATAAAAATCTCT-ACATGTGTAAGCAAATGCCTTAAAGGCAAATAGTTTACACTATAAA-----TTTTTATCTCTACTTAGTTATTTGTAAGTATGTTTCTTCTCCAATTGTGTCAACTAAACTCTGTAAACATTTGGTAAATTTTATGTATGAATTATTTATCATCTGTAAGTTTTCATTCATAAAATTTTCACAAGACATTGAGAGGGAAGATACTTCTCTTGGGTTGTATAATTCTTTAGGAATCTGTATTGCTAAGCAACTGAAATACATGTTACA-------TATTTATTATAG----TTTCTACCACCGAACTGTCTTGTATTACAGGATTTTAAAAACAAAC-------------------------------------------------ATTTATG---------------------CAC----------------------AATCTA--------------------------------------------------AAAATTTCAATTGTGAACAC-------CATAATTCTTAAATATTTTTGTTGGTAAATGG--Gttatattgatattaatattaaaaatta----cttaataaCTTACTGCACTTATTTTGAAGACTGAAGAACTTATGGTACTAATTTTTATCTTGAAATGATAATGTATTTATGTGTA-----------------------------------ATATATGTGTGA----------AATATTAAGACATA----TAGTTTATAATTGCAAA------TCTACTTGTCA-TAAAATATTTAATGTATGTACTTC----TATAA---TCCTTTGGCCTGAA---CATTTGATTGCATTATAATCTTCAAGATAAATTTGAGAAGAACCAACTTTGTCTGTTTTAACATGATGTCAACAGGTTT-TCAGAAAATTCTCTTGCTATCCATTCAATCTTATGTAACTTTTTC---TCTCTGTGGCAGCTCCCCATTAATCTATTCATCCCCACACTGCATGGTTTTGTCATTGAA----------TCTCTCTTGCAAATGTCAGGCTGTGCTGGCAAGTGCACTGTTACTGCCCTCTGCCTGGGTTTTATTTCACAATA-CCTTGATGCTTTGAAATGCAACCTTAAAAAGTGAA------------------------AGCATGACTACAAAATAAATTTTTCAAATGGTTTATGATAGGGATTAATACATTTGTGCCATGGTTGAATATGCCACCAGAAATTGGGAGATTCATTTACTCTTTTTATGACTGAGTGAGTGTGGAATTGGGAATATAAAGTTAGGCCTGGGGGAAGACACAGTACTTAATCTCAAATTTATGTTAAAAAATAATTTCATTATTACTGACAGAAAATGAGTTTCCAGAAACCCATGACGGCT-TTCATTCTTCCTAATTATTTTATGTGGTGTAGTAGAGCTTTGCGCAAATATTACTAAGCATCACTTTAAAGCTGTAAGAATATTTGGTCACCATAGAGTCAAATC-CCCAGAACATGACTGAACCCTGTACACTTAGGCATAG-GAAGTATTACAATATCTACTTGCTAGTCACTCCTGTCTCTGAAGACTTCTAGGCTGTGGGCACTTTGACTTGCA--TTCTTTTCATGTAGCGGGCTCCttaaaaaaaaaaaaaaaagaaaatttaaacaattttaattaaatgtacttataaattaataaatGCATCTAAATGAACACAGAAAGCAAGAACAGAATG--------TTCA-GAGATGTTCCTAACTGTCAGCTGCTACACTTCCTATCAGTTTCAGTCCCCAAACAACACTCAAACATTTGAGCAATGGCTGTGAAAATTCAATGTGTGACAGAACCTTCACTTTCCAAGTGACACAGTATTCC-----TGTGAGAAGACTGTGCATACCATGATACTCCCCTTGCTGCTTTAATGTTGTGCTAACAGAATGGCAAACACAAAGTGCTCCTTTCTTTATTTGAAAAATTAGAAAAACATAATTTCTTGGGAACTATCATATAGTTTAT-TTCTTACAGATCAGAGTAATTTCTAATAATTCCATTTGGATGACTTTTT-TGTTCTCACTACTATA-----AACACAGAATCAGTAATTTCTGGTGATCTTGAAA-----CAAAATGGTCTG---CTTTGAAGTGGTCAGTTCCCATGCAGAAGTGACCATGGCTGA-------TGCCTTCAATGTATCATTCATAGACAAAAAAACAAACAAACAAAATGAAGCCTAACATGTTCCTATGTACTTGTAATAATTAAATTATTT---GAGAGTAGTTTCTATGGGTGA-----------ATAAAGTTATTTTGACTTCTGCATGTATTCTATCCATGGCTGATGTGGGAAATATTAAATAGTACTTTAAAAGTATTTATTTGGATATTCTATATAAAATCTTTCCATCCATAGCTTATATAAGAA------AATCTCTAGGAAATTATTAGATTATCCAGATTTTTTacacacacacacacacacacacacgcgcgcgcgcgcgcgcgcacacacacacacacacacacacacacCACTAACTATACTTGGCACATTCTACTCCAAGTATAGTTAGATAGAGCTGAAGAATTTAATGGAGTTCAAAATGCTTCTATTGCTACTTTCACTTAGTGTGTATTCCTAATAAATATTTAAGATGTGGGATAAAGAGATGGAGGAAATGTTCAAGATGTGCTTAATTATGCCAACTATATATGGAAGAACTTATGTACT--AAGGTCTTGTCTCCAGGGACAACGCTAAAGGATGTTTTGGAAAATTCAAAACATAGTGACAGAGTATAAATAGCAATTAAAATGATGAAGATTATGTTCATTTAATTGGTGCAATTATTTATTTGTTTGAAATGCTCAGTCTTAGATGGAATAATGCTTAGCAAATGATGTGTTTAGGTTCAAGTAATTTGCTGATTACACATGCATTGCTAAAGTGAAATACAATGTATCTGTTAGA-ACTAAACATAAACAACAATAGCAACAAA-AGATGAGAAAGAAATTAGAGTTGT--TGTGATTTAACATCTTTATAGACTTGTTATTTTGTCAGAGGAAAAAGATTCAGATTCCCTGTCATGACATA----CAAATACTGACTCAGTT-------------------GCAGGTTTTCTTTACACAG-----AAATGGAG------------ACATGGCCTT--TAATTCTCTCATCCAATTCATTTTGCTTAA----GCTCT----------CTTGCTCTTCAGATATCTGCGGGCCAGTTTTCATAATTCACCTCAAAGTTCAGGTAATTGGCTTTCTCTCTTT------GGTCTCTTT--TGGTTCTCAGCTTCACGTTACATGGGTCCTTTAAGCTTCAA--ACT-TTCCATGCCTCCTA-----TTATCAGATTT-----------ACACTTCGAGACCTCAAACAGCTGATTCTCTCTAG--ACTGTTCTCCATGATATACCCTCAGAGTTCTAC-----TTAAGACCATGCACTGTAGACTGAAAACACTTCAT
s HiC_scaffold_1 145782420 3678 + 233722169 GTCTTCCTTTTTCTACTGCCGCCACTTTGGTTTGAACCTCTGAGGTTTCGCACATGGATTATCCACGCACCCATTTCCTGGGAGCCAACTACCAGCCTCACTTCCAACAATCTCGTTTCACA-CTGCACCCCAACATTTTTCCCTTtgacaacatttttttaaagttcaa----------agtTACTTTCAAA---TGCAGACTTCATGATTTTCTTTCCAGCTAAAACTGAAGTCGACCATTACCAAGGTATTTCTAAACATGTTTCTACAGGTTTCTCTCCTTCTTTATGAAGACAGCCTATTTGAGCTGCCT-------TTGAATTCTGAAGGTGCTTTCTTTTCTGCCCCCACATAATGTAAG-----------TATGACTGTCCAAGttaaaagaacaactgaaatttATAAGCCAAGTATATGAAGGCTGGTCATTtgcattataaaaatgtttttcatttccgCTGAGTTACTGCTTAGTATTCTTCCTAT------GTGTGGTTCTAATTGTATAAATATTTGATGGACTTTACGTATGAGGTATTAATCATGCCCTATTTGTTATTCATTAAActttaaaagaacattaaaaaggaagaaatttcagTTGGCTCATGTAATTCTTTAG------------TTAAGCACTTGAAACACA-ATTACACAGATTTTATGTAGTATAAAAATTTACTGCTATTGAATTTTTTGGTGGCACTAGAATTTGAACTCAGGCCctctgtactgagctatatcccccacttttactttgtattattattattatttttgtttagagACTGGATTCTcagtcactcagttgcccagaaTGAGACTGAATTTACATTTCTACTGCCCCAGTTTCCCAGATTATTGGAATTATAACTATGctatagaattttaaatataaaatcatttattcacaatttctaaaatttttgatTAGAATATGACcattattttgatattatttgtaAATATGATAATCATGAGAA------------------AAAACTATTAAATTAAATGAACAAAGTTTTATCTTGAAAAAATTATactgttatgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatgtaagtctATAGGTAATGTTAACATTTAATATCAGTTTCTTTTTGCAAACATAACTTCATTATTCagtgaaatattagaaatatgtgATGCAAGTCATAAAATTCTTTTAGCTTGAAGGTTTTTTGATCCTATTACAATCTTCAAGATACATTTGAG--GAATCAACTCA--CCATTATAATATGAAATAATGAGATTTGTCAAAGATTTTTCTTGCCATTCAAATCATCTTATTTACCCTTCCCACATTTTtatgcccattttttttta-tcaattcatAGAAACACTGGATAGTGTTATCATTAAGCTtccaattttctttcttgaaaacatTAGGAAAAACTGATAAATGGAAAGT---------------GCATTTCCTTTCAGTATGGCCTTGAAATTTTGGCACATAACCTTCAACAGTGAATTTAAGCTCACTTCATTTCTTAAAAGCATGATTATAACATAATCTCTATTAATGGTTTATAACAAGAGTTAATGCATTTAAATAGTGTTTAAATATGTCAC-AGATAAAGGgtaatttatttactctttttatgaaataaaaagtacTGAACTAGGTTCTTAAAATAAGTCATTTGAGAAGttacaatatttaaattcatatttctgA-AAAAGATAATTTCATTATTA----------ATGAGTTTCCTAAAATCTACAGTTGCCATTTTGTCTTCCTAATTATTT-GTGTGATGTAACATAGGTT--AACAAATACTGCTAAGTATAAATTTAGATTCATAAGA----CTGGTTATTATAGAGTAAAATTACCCAGAACACTACTGAATTCTATATACTTAAgcacaataaaataatatagtatCTACTTGCTAGTTATTCCTGTCTCTGCAGACTTCTAGGTTGTGACCACtttgacttgcatttttttttcatgtagcgggctcctt-----aaaaaaaaaaagaaaatttaaaagattttaattaaCTGCACTTATAAATTAACAAATGCATCTAAATGAACATAATAAGCAAGAACGGAATGTGAGGAATTTCATGAGGCTTTTCTAGCTGGCAGAT--TACACACCCCATCG------------AAGTAATTGCACAACATTTGAGCTGTGCGTGTGCAAATACAGTGTGTAATAAGA------------GGATGACACGGTTGTTCAACTTTGCAAGAATGCTATGC-TACAGAAATTCTTTCTTGCCTGTTTTATTAC--AAATACCTACATAGTAAACGTGAAATG--TATATtgtcattttgaaaattat--aaacataattt-----aaaattcttcatactTTATAGGCTTACAGGTCACATTACCTTCTCTTTGTCTTATTTGAAGAAAGTTTGATACTCTCCCCACTGTATATTCCACTCAGATTTGGTAATTACCAGTGCTCATAAGAGTGGGCAAAGTGCTCTGACATTATCAAGTTGTTA---CACAGGCAGGAAC--TCAAGGCTTAATGTATCTATCCTC--TGtatcat-----------------aattaaaataatggaGCCCCAAATCCCTTTGTGCAGTTTTAGGAACTGAATTTGCTTAGGAAAGAGACTTCCATGAGAGAGATGCAGATAGATACACTGATTTTG--TACTGAA---ATTGCAGACATGGTTCACATGAGACAGAAAGGCATATACCTTAGAGCTATCCATTTAAATACTCAACATGAGGTCTT------CATGTCATATCTACAAGCCCAATAATCtccaagtatttaaaatat-----aggt--------caaaaataaagaaactctTATTTGCTAGTGCGAGAG-----------------------AAGTACCA---------------------------GGATAAAGT---GGAGACTCAGAAATCTTAGGAGACATCAGCGAATCTCTGCTGTCTTTATTAC--AGTGTGTTGCATCAAGAATTG--TAAGA---GTAGTAAAATGATGCAGAAAATATTCCAGACCTGTCTTAAAAAGCAAACTGCACACAGCAGAgctaatacattaaaaaattctaCTTGAAAAGAGAACTCCAAAAGCGATTTGGG--GATAAAAACCATAGTGATAATATATAAA-AGCAGTTGTAATGATgaagataatatttatttaattgatGCAGTTATTTTGTTGTTTGGAGCACACAGTCTTA--------------------------TGTTCAGGCTC-----ATTTTCTGCTTCTACACACATTATTAAATTGAGATGGAATGTATCAGTTaaacaataaatttgaaaaac--caaCAATAAACATGTAAGATAGGAATTAAGGTTTTAATGCAATTTAAAGTTCTTCTAATTGTGATGCATtatattgagaaaaaaattcatattccTTATTATGCCCTCAAATTAAAAACTGACTCTGTGTCTCCCAACTGTATTCCGAGCAGCCTTTCCTTATGCAGGTCGTGGATGGAGCTGACAGGTGACGTGtggccctcctccctccctggcccCCTTTATCTTCGTTCCCATTGCTCCCCGCATGTGGCCTGTCCTGCTGACTTCTGTGTGTCTGGTCTCACTACTGCCTTCAAAGTCCAGATA---TGCACTTCCTCTTCCAGAAAGGCCTTCTCAATTCTTCTCAACTGCATGCAAGCT-CATCCTCCAAACTTCCATTACTCTTTTATCTTCTCTAACACTTTGCCACACTTGCGAGCTGCTAACATCGCATCACAGCAAATAACTAACT---GGTAGGTGCTTTTCTCCCTGATTTATCCTTGTGTTTCCACAAAATTTAGAACAATATA-TGTGGACT--AAACATTTCGT

a score=18578
s chr3           158415419 675 + 160039680 TTGCCCATAGTTTGAACTGTGTCTCTGACA--CTACTCAAAAGTAGAAAGCACATGTTAAAAATCCTCTGGGCACAAGTTCCTATTTAGCACATG-ACTCCCAGGGGCAAAGCCTTGTTTGGTTACACTTTTAATCAGAGTGTCTGTTCTGA------CTGCAGTATTTAACATGTGTCACTGCAGGATTTAGTGTGAGTCTAGT---GAAATAGGACAGACCTAGATGCCAAGCCCTATACCTTCCATTTA----TTAACGCTATACTTAAATATGATTCTTCATTGCAAACATTGAAGCTATCATTAAAATCATCCTTTGAAATACATAAGGTAGAGATGGTCTGCCTGACAAT-------TGCAAGCCTAAGATTGAAGACACAAATGATGCTTAAGTGAAAAG--TCCTGAGAACTTGAAATCTCAGTCATGCTCTCAAACAAGTATTGATTTGTCTGAAAGCTTTAAGTTAGTGTCACGCTCAATGCTTTCTTGGGGTTTCTGTGACATGTTTACTAATCATCATTGATTATTTAAT----GCCAATAATATCCTAGGAGCTGATGAAGTACAAACACCGCACAGCAAAGAAATTCAATGAGCATTTTACCCAGCAAGTGTTATGGCAAAGGGCATTTTAAGGGTGAATTACAGGTGCAAAAGAAACTTGAAAGATCCATTGTCTGCTCATCATTTTAG
s HiC_scaffold_1 145787985 696 + 233722169 TTGCCCCCAGGCTGACCTG---CCTTGACAAGCTCCTCAAAAAGAGAAAGCTCACTTTGTAAGTCCTTGGGGTATAGGTTCTTCCTTAAAACACGGACTACCCGGGGCAAGGCCGTGCTCATTTACAGCTCTAgttggtgtgtgtgtgattgtaAATGCTGCAATATTTAACACAGGTTGCCATGGTACTTGAGGTATGCCTGCACCATAAGCAGGCCAGATCTGGATACTGAGGACTACAATTACCAGCTACAACTTTCAATTAGATTGAAATACAGCTGCTTAACACGCATgcttaaatattcattaaaattaatcTTTCAGATGTAAAGGGTACAGTAGGCATACTTGACAATACAAAAGTGTTAGATTTAGATT-----TCCAAATACTGCataagtaaaaaaaattctgggggCTTGATATGTCAAGAGTGCTCTGAAACAGATACTGAATCTGCTAAGAACTTTAGCTCAGCTTCATGGTTAATGCTCTCTTAGTGTTTCTGTGACCTGAGTACTAATAACCATCGACTATGTAATACCAGCCAGCAATGTTCTAGGAGCAAATAAAGCACAGGCACTGCATATTAAAGCACCTTCATAAGTACTACTGAGTGCAAAAATTATGGTTGAGCAAATATTTAGGTTGAATTATAGGACTGGAAGACATTTTAAATAGCCATGGTCGATTTATGACTTCAG

a score=17576
s chr3           158417556 688 + 160039680 AATTGTTCATGTTGTATTTGAACCTTTTCGTTCAATGCTTTTAATTTTGCTATCAGATT--GAATGTAACATGTTTGAGAACTGA-CCTG--TTTTGTC--TGATAACATCTCTG----------ACAAAGAGGGAAGCTGTCATTTGTCAAATCAATGCATGGAT-GAGACTCCCAGAGAGGAGGTAGTG---AGATCCTCTGCAATGGGTG-GAAAGTTAATGTCCTGTTTTTGGTGACAGGATTCCAGTTCATGAGGATCTGATATGAAATCCTATACCT-TCCATCCTACTGTGATAATGGCCCCATGCCCATTTTCTATTTCCTGCTTCAGAAAGCTCAATTATTTCCTATTTCCTACAGCATTAAATCGAAACTTCTCTGCCTGAATTTCAAATCCTTCCATAATCTGGGCAGTTATATTATTCTAAGTTGCATCTTTATAAAAAACTACTGAACAAACAAATTATAGGACAAATA-AAATGCTGGCAAAATCTGTATAATATAATGACTTGCAGGTTGTTTATTATTAACAATTAGTTTAATAGTAGGAAACAGCATGATCTAGACTCTCA-AATACAAATATGAAAAGTCTGCGTGAGGGTAAATGGGGTTTCTTGAACAACAGGAGTTG--GTATGAACACTAGAAACTGCTGCAGTGTATTTCAGAAGACAAAAGCCAGAGGCATTCAAAGTGCCACAGACAGGG
s HiC_scaffold_1 145792470 692 + 233722169 AATCATTCATgatgaatttgtttcatttcttgtaTGATTTCTGGATTTGTTATTAGATTATGAGCACAATATGGTTCAGAATTGAgtctgatttttgttgttgttgttgttgctgttttgttttcactaag-------------TTTGTTGAATCAATGAATGAAGAGAAATCCCCATGAAGTAGGTAGTGGGGAGACTGTCACGCCTAGGTGAGGATACTAAGGCCATAATGGTGGTGACAGGATTCCAATTCAGGATGGTGTCACATAAAACCTGGGATATCTCCATCATACTGTGATAATGACATCATGCTGTTTTCACACTTCCTGCCTCAGAAACCTTTATGATTTTCTATTTCCTATGCCATTAAATATAAAGTCCTTGGCCTGAATTGCAAATTCTTCTATAATCTGGCCAGTTAGCC---------TCGCATCTTTAAGAAACATTAATGAACAAATACATTCAAGGGTGAACACAAATGCCCCTTAAAGTTACATAtgaaagaaattcacagattgtTTACTGTTAATAACCAGCATGACATGAGACAAGAGCATGCTCTAGCCTCTAATCACTCCATCAGAATAAGGCTATGTGAGTGTAAATCTCATTTCTCCAGCATCTGGGACTGTTGTGTGAGTGCTGGAAAATGCATGACAACACTTCTG-AGTCAAATGGCTGAAGCACTCAGGGTAACCAAGAAGAGG

a score=30796
s chr3           158449821 3188 + 160039680 acTTTCTATTTTCCTCAAACAGAAGATTAATTTGGCAAAAAACCATATTAGTAAGCTAAAAGAGACAAAGTTAGAGGGAGGGAAAGAAATCAAGAGGCTGAGAAAAACTTTATATGTCCTAGGTTCTGTGCAACACACTTAATATAAATCTTTATCTTCTCACAATAGTCCTGTAAATCATCAAGGCGTGGCTC-ACTATTAATCTTACTTTAGAGGTATATCAATAGAGCTCTTTATGAAAATAACACACAGCATACT--GCAGCTAGTTATTGTCATGAGTTGTGCTAGAGAATAGACCTTCTCACATGCTGCTAAAGTTAATAAAATACCGCAGTGTT----TTGTCACTACTATTAAAAAGATGGTGTCCTTTTCTCAGGAGTTAATGCTTCCCTACCAGAGCACAGTGGGGACTTCTCATTATATTAACTAACGACAACCTGGAGATTTT-ATATATATATAatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctataatctatatatatctatatataatctatctatctatctatctatataatctatctatctatctatctatctatctatctatctatctatctatctatctatctatcCATACTAACTTTCTTAGATACATGTGAAGTATATGCAAGAAGCTTATTGCTTATAAGTATGAAATATATCTATTGATATCTCCATCATCATTAGTCTTGTGTATTTGATGGCTTAATCTCATCCACCATCAATCACTTG-CTTAGTc-ggtgactttcaggcttatccttgcatcacattctctaatg--gggcttcttaaagtatagatcacta--ctcttgtctgaagagatacttaattcaacaagtttggccacaagcctttgaatctgtgcatctaatgagttcttagggtgatttatctgctgttggtttcagtgccccaatttaagaatcactTATTCAGACAGGAGTTCAAATCTTTCTCAAGACATATGGGATGACTGgctcattatgccagcactgagaagactgagacaagaggccagtctgggctatctagtgagactttgtttcaaagaacaaaaCCAAATAGATAAACAATTTTTTTTCTTATAAAGAACCAGGCACAGGAATTTGGCTTTGTTCTGTGGAACATTTAGCCTTAG--TCATGACTGCTGAGTCTTTCTGTGCAG-GCAAAAGTAGTTCTTCAGAACATCTAAACAAATGTGTAATGCCAATGTTTCCATAAAATCATATGTACAGAAATAGGCATCAGGATGAATACCAT-GGTAAATTGCAGTTGAGTAACCACTGGCCTACATAATTCACTAAAAGAGTACTCATGGAAAAAAAAAATCACTAT----ATATTAAACAGCAACTACCTGGCAACCATCTATCAATGTATCCACATATCTTCTAAGTTTTTAAGTTAAATGTATAAGCCTATTCCAGAGATTTAGATGT-TGTGTTTAACCAGAAAAGAGGGGAAATCCCAGTGATTCCTATAAATTCAGT-AACGGAGATAATACTTAAAAGCTAGGATCTTCATA-----AGTGCTTTTAGCT--AAATAG----------CATCTCCACTTTCACATTTTAGTATTTATTGGATATTGTTTATAGGGTTAAGAGACATTAATTCAC---ATGCAA-AAGATCAACACTCTAGTGAATGACATAAAAATTACTGCAAAAACATATCTCTTGACTTTACTACACAACAGCCAGTATAAGCGCTTCACTTG---AGTTTGCAGGC------AGTATATGTGATCCTTAC------------ACTTCAAACTACTTTAAAATCCAAATGTAAAGTTAACAGTCTACTGTGCCG------TCTGTGGAGCT-CAGCATTAACTTTATAGTTAAGAAATGTAAGTTCT--TAAATTTGGACAAAATTCAGATGAATGTTT-GTCATAATGGAACATAATTTAGTATGCTGAAAATAACTCCATGTAAATACCACAAGAAAAGTTAGGATCATGAGTCATCTGACAAATTTCAAATGCGAATAGCATGTCAAAAGTCTCCAACAATCTGTTATATGCTATGGAATATAAATATTTAAATGAAGTCTCTACAGATGACTACACATGCTAATATAAAATAATTTGAGGCTGGATTAAAGTGTCTTTACAGTGTCACTTATA----AAATCTATCTTTCAAAACATTTTACTAAATTCCTTTAAATCAAA--CATTTCAGTTGACAAATGGGTCTGCATTTACCCTTAGGCATTTAATTCTCTAGGA-ACAGTGTTTTTCAAAGAGTGTGGCATTTTAAGAAAGCAAAAAAAAAAAAAAAGTTCAAAAGAGAGCTGTAGTGCAATGGAAACTGTAAAATGTTGATTTTAAG-CACATTTTATAAGGTTTTTTACCTCAGGAC--ATTAGTATGCATAACATAGAGTGATTCTGAAAGATTTAGAGACTGTGTGGACTTTTCTGTTCT--CATTTAACACAAAATTCAAATGCCACGGGAATTTGTTAAAATACCAGAGGAATGATCTTGGGAAAAGAGCTTGTAGCACTTGTA-----------TTTGTTATAATTTAAAAAAATCAAGTCAATGTAACATATATTTATTGAATATATCTCCAAATTGCCTGAGCTTTTTAAAGTGAACCTGtccttccttccttccttccttccttccttccttccttccttccttccttccttcctctctctctctttctctctttctttctgtttctttcttgtcctttttctttctttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttcttcttcttcttctttttttttttcttGTGCCAATCACCAAAAATCTACCTAGAACATGGTTAATCCGATTAGCTGTACTTACACTCCTCTTCAGGCCTCTTCCGAAGTGCTGCACGAGCCTCCTTACAAGGACTTCTCTGATATTGTGGGGGATTCCTTCCCCGTATTAGGCTCTCCATCCTATAAGAGAAAGACC-AGTAGTGTTTTAATACCTGAATCTTGGTTGATAATAGAAA-----TATCATATTGAAGTTTAAATACTGACAGAAGGTTTGTACCCTACTTTGTACC-----ACTGAGAGTATCTAACAGATAAGATGACAAGGGAGTGTGGAG--CATGGTAAGCTGGAGAATGCTTGGCCTTTAAAAGCTATATTG---ATTTAAAATGTTA-AAACATCCGGTggaa
s HiC_scaffold_1 145824441 2628 + 233722169 ACCCCTTATTATTGTCAAGTAACAGATTACTTTGT--GATGACAATGATAAAAAGCAAa------------tagagatagaaaaagaaacaaaac--------aaaacttgctaTGTTC------CTATGCTAGGAA---AAAATACATCTTCTTTAATTCACAAGA-------CAATCATATAGGCTAGAATCTatcattattctcttttt---------------------tttaggtAAATAAACTGAGTCATATTAAGTAGCTGGTCAT-ATTAAGA----CATTAAAGACTAAATCCTTTTGTGCATCTCTGAAGTTAATAGTCTTAAGTAGCATTATAGCTGCTTCTAGTATGAAACAGG-GGTGGATTTTTCTCAGGAATTAATATAGTTCTGTAAGAGGACAAGAAGTACTGCTCATTATACTAGCAAGAGATAA--TGAAGCCTTTCAGAGAAAAATAGTACAGCTTTCTGATT-----------------------------------------TCAGTTGAAGATTTA---------ATATGTAGGCAAC----------AGTTATGTTACTTACCT-TCTACATATTAGGTGACCAG---ATGTATGCTTCTTACAATTAGCCTA-------------------------------------CAGGAGGTTT--------TGATGGTGAAATATGTCTAT------------CATCATTAGTATTCTCT-TTAGATGGTTTA-CATCATCAGCACCCAATTGCCTGACTTAGGCTAGTGTTCTTCAAACTTGACCTTGC-TCATAAT---TAATTCCGGGCTTCTTAAAATACAGATTACTGGGCCCTACTCCTAAGAGAT--TTCACTCAGCAGGAATG-----CAGCCCTGTAGGCTGCATCTGTAATGAATTCTCTGGG-------------------------GCCC-------------------------------------------------------------------------------------AGACTG----------------CTTGCTGTCTGGAGGGACT--GCTTCAGAGA------------------------TTCTATCCCATCaagaaaagg---taaatattttgccT----CTGTGGGTCATTTCATCTGGGGTTTATAAGTAATCAAGATTT----GTAGTGTGACAATAACTCTACACCATACCTAAATTCACAGACAGTAGctatatttcaaaacaat--tttttatgaaaatatgtatCATGTTGGAGTTCATCAATAAATGACAGCTGGTCAACTGTTGGTCTATGTAATTCAGTACCAGAGCTCCAACAGAA---------TACTGTGCTTATGCTAAATAGTGACTCTATGAGAACTGCCAGCAGATATATTcacaaaaatact--gtttttaaataaaatccataGTACTATGCCAGAA--TCAAATGTCTGTGTTAAACCAGAAAAGC----AAACTCCAATGTTTCTTA-GAGcccagtgaaacaaaacaaaacttttatgcaATGATCATCATATTATAAATgctttttgctttaaataaacaTGAAATCTATCTTGATCtccaaattttagttttaattgggTAATTTGTAC-----TTGAAAATACAGATTTACCAAATAAAAGAAGAACAACACTA-ACTGAATGACACAGGTGTTA--GCTCAATCAGGTTATCTACACATAACACACAaga-caaaactaaaaactttatctGCAAAGTGTGTGCCCTGCTATAATGTACTTGGTCTTTACCAAGACCAGTGTACTTAGAAGTAATTTAATATGCCAATATAATTTTAGGAGTCTACTAAACTGCATACTTCAATGAGTCTGCTACATTAGCTTTGTGTGTAAGAACTACAGGTTCCCgtaaa---aaggaaaattcagatAATTTTTTTGTCACAGTAGAAtgttatttaattctttaaaaataa-------------------------ttaataatatgcACCATTTTGCCAACCTAAAATGTGAGTATTGTGTCAA--GTCTCCAACAATCTACTATATGCTgtagaatataaatatttaaataaaatct--atagaTAATAACATGttctaatatttaataatttgaaGTTAGACTAGCATGACTTTATGCTGTTATTTATACCTGGCATCTATCTTTGAAAACTTATGCTTATATTCGATTAAATCAAAGGCTTTTGATTTTGCAAGCATGTTTATATTTATGCTTTGGTATTTA-TTCTTTGGAACACAGTTGTTTTCaatgaatcttttcttttta--------------aaaacatgttaaaaaaagaactgtggtcgaatggaaactgaaaagcatccatttaaaaatacatttacaaagCTTCTTTACACTGGGATTTCTTAGAAC-CATAG-GCATGGTGCACACACAAAACTCACAGCCT---------CTTCCGTTCAAACCCTCAGCAGGAAGCTTGAAT-TCACTGACACATCTTATAGTGACAGATGAGT-ATCTTAGTCTCAACACTTGCA-CACATGAAAGATATGgtagtttgcttt---tttaaaaaatcaccttaATGCAACCAATACATAGTGAAT-------------------GCTTATTTGTTCAGATATGTAACGCCTCCATTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTATGCTACTCACCAAAA-TCTATCTAGATCACAATTAATCCTATTAAACATACTTACACTCCTCTTCAGGCCTCTTTCTAAGGGCTGCACGAACCTCTTTACAGGGGCTTCTCTGATATTGAGGGGGATTTCTTCCCCTTATTAGGTTCTCCATCCTGAAACAGAAAGTCCAAAGAGTATTTCAGTACAGAACCCTTCATAAATGGTAGGAATTCAGTCTCAGGTACAGTCACAACTACCCACAGAAGCCTGACAGacatcactgttcctatttaTCAAGTGTGGCAAACGGGGAA-ATGGTAGGGGGTATCAGAGACTATGGACAATTAGCGAATGCATAGCTTTTCCATG--ACATTGCAAGTTTAGGAAGTTAGAAATATCCTGTGGAA

a score=7309
s chr3           158454929 235 + 160039680 GTGCTTATTTCTTGGAAGAGAATCCTAACTTTTGCCATGAGGCTTAGATATGAAAATTAAACT-CATCCAGTTTTTCAGTTTTTGACTCTTGAGTCAATTCAGTATACAATTTTGATAATCTGATTGAGCAAATGTATGAATTTCCATGAGAGTCTAATGATAATTTAAGTGAA--------TATTCACCAGTATTTATAAATTCAATATACTAAAATGAAGCAACTACAACCTGCATATGTAA
s HiC_scaffold_1 145828754 228 + 233722169 GTGGTGATTCCCTGGAG------------TTTCACCACCAGGAACAAACACATAAACTAAATGATAtcaaattttcttgtttctgacatt--AGTTAATTCAATGCATAATTTTGATTATATGTTTCATCAAATGCATGAATTTCCATGATGTTTTAATAGCAACTTAAGTAAATCTGCAATTATTCACCAGTATTTACAagctcaaaagttaaaaaaaaagca--caaaaactgTACAtacaa

a score=20575
s chr3           158457343 1224 + 160039680 AACTGCCAGTTTTCAGAAATGAAAATGTTGATATAGTGTACTTCAATTA-ATCAATTCATTTAAGAAATTACAAGTAAAAATCT---AAGAATATTTCGATGAATAAAATGCCCTGTTATCCATGTCATATTATTTAAAGAGCTAAATACCTTATTATTTTTCAGGGTTTAGAC---AATTCAAAATTTAGAACTGTTCTCTGACTACAGGAATACTACTGA-AGCATCTCTAATGTCTCACAATTTACC---CGTTTCATTCAGTACCCAGTGAAATGATCAGAAAGAGATTTTTTAA-GTGAGTATATGAAGGCTTAGAGTTTCTCAGTTACTTATTCATAGCCACATGGGCTGTGGAAGATGTAGTCAGTCTTTCCTGGCCTTCACTTTCTGATTT-----TACCCCATTA-TCCCAT------GCCCATGATTATATGGAAATAATATGCCTATCATTCTATTGAGTAAAGCACCATTAACTGAGGTAAAAATCCTTCATAAACACAACATTAATATGAGCTGTATACTGATATATGAAAGTTTAATGTACAGCTTCTTAACAGATCAACCAACAGTATATAAACAAATGTGTTTGTTAATATATAATAATATTCCATGTTATGATTTGATTGTTGTCCTGGTGTCACTTGAT-GTCTGCTTCATTCAGTGACATTTTA--TCTTCAAGAACTACTGAAAAGTTAACTGGAGCCAAAAAAAATGCCTATAAATTATGTATATCACATAGCCATGGAAGCAAACATTGAAAACATTAAG-ATTCTTTTCATTCTTCAGATTTGTAAATGTTGTGCCCACTGGGAGACATGC--------------------------------AGTCATGTCCACAGTGTTATATAACT--GGCACTCCAGTCTTCTGGAGATCACACTGATATTTA--TGCAAACTTTTCAACCAGTGCAATTTGTGGTACATGGTGTACATTATATGTCCAAACAAAGTTACCAAGGCTGGAACCTTGGAACAC-TCCAGTGCTCTGCAAAGGAGCTGTCTCACCCATTCTTTAGCTTGGCACATTACCAGTGAG-GTGTGTTAATAGTTCCAGCAGTGAGAGATGAAGTGTGATGACCACAGAGAAAG-CAGATGGTTTAAGTCTCATTGAGAGGTTTGAAAAAGTGTTC--CCCACATGTCTTTTTGCTGAGAAGTATGAACATCTATAACATCCATATACATTTCAAACAACATGAGTAGGCATTTGTAATATGTAAGCAAAATAAGTCCACAACCTGTTTGATA
s HiC_scaffold_1 145829761 1200 + 233722169 AATGGCCAATTTCTAGAGATGAAGAAATTGATACAATGTACTTCACTTTTATCAAAAGATTTAAGTGTCTACTAATCATATTCTTCCAAAAATATGTACATGGTTA-----------TTCCCATGG---GCTAGCTGAAGTGCCACATGTGCTATTGCTTT-CAGAGTTTAGATGGTATTTCAGTAGTGAATAGTGACATCTGACCTTaggaagaataataataatacctcCAAGGTATTACAATTTACTGTTTATTGCATTTAATGCTT-TCACAGCCTCCTGAAAGACCATTTTAAATATGAGGAAAGTAAGGCTGAGAAATGCCCA-TGACATTCTCATGGCCATGGAGAATG-GCAGGATTGGGACAattcatctt--ttctcattttctaatttcttcttaatCCATTAGTTCCATAAATCTGCCACTAAATATT-----ATAATCCCACTGAGACTCTACTGTGGAATATAACTTAAGAGTAGTTAAA--TTCTCCTTAAGCATAAAATTTAG------TGTATACTTATGCATacttgtataaaataccac------------------acaCTTTGT---------TGCTTATTAATCTGTTA----ACTACATGTTTGGTTTCAAGCATTTTACTAGTGTCCCTGAAAAGTTTGCTACTTCTGGTGACATTTTAAGTTTTCAGAAACCGCTGAAAA-TTAGGTGAAGCCAGAAAAATTCTCTATAAATTATGTATGTTATATACTAAtggatgaaaatattaaaaagattaaacattccttt--ttctttggaATGTTAAATGTTGTGTCCATTGAAAACCATACTTGGAAGCAAGTTAAAGGTTTTACAGAATACAGTTCATGTCCAAGCTGTTATAAACCTCCAAGACTTC-TTTTTCTTAAGATTACAC----ATTCGGCTTCAAACTCTTCCTCCAGTGTCATCTATGAGCTACAGTTTGCATTCCATGGTCAAACAGAATGACCACAAATGTAATCTTGGAGCACAGCCAGGATGCTGCAAAGC--TCTTCTCACTC-CTCTCGAGCTTAACAAGCCACTAGTGAGAGTGTGTTAGCAGTTCCAGCAAGGAGAGATTAAGTGTGATGTCCACAGGCAAAGATAGGTGCTCTAA-----------CAGTTCACAGAGGAGCTCAGCTTACATGGTcaactgctgagaag---aaaca---aaggaagccAGATGAATATTGAACGGTGCAAAATAGCAATCAGAGT-TATGTGCAAAAGGTGTCCACAGCCCTCTTGGTA

a score=43089
s chr3           158465242 3507 + 160039680 TTTAAATTATATCACATGAGTATGTCAGTTTCCAT-------GGAAAGGCACTTGCAGA---------GGTTCATGCTGTTAGCAATGAAAATCACAT------TTTAACAAGA-AAATTCTCTTATCTTAATGGCACATATTTGGAAGGGAGCAAAGCAAGCAAATAAAAATTATTTAAAATGCCACCTTGGTTCTGAAATAT---GAAATTTTAGAGCTTTAGAAATGCTTCATGGATAAACTGCCTGAGAT-------TACAGAGATTGTAAGACAGTGGTTTGTATTCAAAGTTGATAAATGTCAAAGTTCTCTAGCTGTAAGACTTCTCCTAGCTCTGGTTTTTGTGCTATATTAGAATAATATCATCAAAAATATACATTATTATTATTATAGGCCAAAGTAAGAATAATTAAAAGCCTATAGCATTTACACAAAAGTGGTGAATTGAAAAATAGCTGTCACAAGGTACATTGGGAAGAA--TTAATAAAAGAGTGTATGGGTAGGAATCAACAGATCCCTATCATTTTCAATATTAAGTGACCAAAAGGACTCACTTCAGTCGACAGAAATAGTCTATCAGCACACAGAACCATAAATGTGTCTGGAACTCCTGTGGAGAGCCTAAATTAAAAAAAAAGTATGAAAGATGTTATGAAAAAGACATGGCTAGTTCAGCAGAACTACTTCTAGTAAAAAATTTAAATAGAAAAA------AAATGGAATGTTCCCTCAGTATCTTTCTGTCAAATTTCTTCACTTGTTATACTTTTTCTACCTTTCTCTTAGTTACGTTCTCTGTGGTTCTTGGCATGTCAATAACATCTTGTGGCTAACAC-ATTCAATATTATCCTTTAGAACATATTTCAGAA----------------------------AATAACATGTGTGTA--CTCAGGTGGTA---TAGATACACAACATCCAAATGA-----------AGGAAGTTTTAT--AACGGGACAATAGAAAGTACCTTCTAAT--CTTTCACAT----ACGTGTAGCTTTTTCTGAAGTAACTCTACATAGAGAAAGCA---------ACTGGTAAGTCTATGCAAAATATCATCTCCTCATAA-ACAGTGCTATGGCCTGATGGATGAACTTCTGACTTAAATAACTGGAACTTATGAATTAGTCATT-TCCTTTAGA---ATAATTAAGCTTTTAGTCTTTGAGATTAA-TATTAAGTAAATTCAGGAATATTCTTCACGCTGTGTAAC----TCAGTAACACAGAAGTGCCGAGGA--------------------------------------------------------------------GATCCATCCTGAGGTTTATAATCAGCTATGGATCCTT-TAACTTTATGAAGCAGTGTGGT----TTTGTGACTGAATTCTTATTTCTATCCCTTTACTTCC---CCCTCTG------TTTATCCCCCTTCTTTCTCCTCATCTACTTGCA-------ATGACTATATTGTTGTGAGACATGATGACATTTATTTTT--ATGTTTTTCATTGCACTGACACTGCTTGC--CTAGGGCAACATTAAAACCATGGATATTTATCAATATTTAATTAGCCTTTGGGATGGAAAGGGTTGTTGTACAATGGAGAAGATTTTAAGAAAGTCTACTTT--------AGAGGAAAATTTGAACTATACATTTTGTTAGATAAACTAGGCAGGGTGTTGCTATGAAACTCAAG-CAATGAATGGATGATTCCACAATTTTTTTAAAATACTGTTTTCTATTTATTTATTGCTGTGTACTAAGACAGCCAAATCTCACTTTTAGACATTTTCTGCAACTGTTCTTTTGGCTGTTA---CCAAATCATTAGCATGTTGAAGAGGGACAATTTAGCCATGAGAAAGGGT-TGTGTCGAGCATTCTAGGCAATAACTGCTTCTCTTTACCTCTTTTGTTTTCTAGTTCCTTGGCTTCAATTTGGGACCA-----------------TTTTCACTTAAGAAATAAAAAAAAAAAG-CATTTTCTTGAAGCATTAAT-TTAGACTTTTTTTTTTTCACATCCTTTCTTGGAAAATGGTGGTATCAggactggatctgaaatatctcccaagaagtcacatgtttaaagtttggctcccattgctgtagttttaaatgtggggttggtggaaggtgatgattagat--aaTGAGAACTTTGGTCTTATTGACAATTTCATCCACTGATGGATTTATATATTGATGGCATCATTGGCAAGTGGAGGAAATGACAGGAAAAGGAGTTCATTGGTAGAAGCAGGTAACAGAAAACATGTCCAGGAATAGTGTGCCTGGCACTGTTTTCTCCTCTCCTCTATCTCTACTTCATTTTGTGCACACTTTTCAGGCTATGACAGGGTGAGAAACTCCTTCCCAACCTTCCTTGTCATAAGTGTAAAAGCTACAGGTTACTCTAACCCAGACGTCTCAGAAATGATAACTTGTATAGTGTTCGGAGAAACTACAGGTAAAAATGTTACTCTGACAAACATGATATGCAAGAAATTAGAAATAAACTTAATTAGGGAGTTTATGGTCCTAAAGCATGCATTCTGAGAATGAATAGTGGCTGAGTGAA----GAAGTCATAAGTAAAATCCCAGTTGTAAATACATATAGATGTGTCCAAACAAATAGTACCTGATCAGACCATCTGAAAAAAAAAATCA-----TTGGATTGGAGAGTCATCTACTCAGAAGCACCAAAGTGGTAAGT-CTGAAATTTATACCAAAGAATATGAGTGAACAAGAA--AATATTAGTTACTGACAGAAACCATGGACATTATCAGCCAGAATTCACCTGAAAACACGGGGAAGAACCAAG--------TTTCCTCGACAAATACAACTCAATCTCAGT-GTAAAGTTAGACAATAAAAACAG-AAATAACATACTTCTTGTTTCTGGAGTGGGCTTTGCTTTACAGAAAATTCTATCTGTTCATCTTTTAGCAGAAATATTCCACTCAAAAGTCTCTGAAAGTTCCCAGTCAGCAGCTGAT--TGGTGATG-ATGGGAATAACATGTTTCCTCAACTTTGATCCTAAAATGGTGTTTTCTTTTACTCTGCCTTCATTATGCATGTATGCCTTAG-AAAATTAT--AGTTAGACAAACAGATGCACTTATAAGATATACTACATCCAGTGAGATATATATATATTTGATTTGGGATATTTCTCATTACCAAGATGAAGATTTTATTAGAGCTTCTAGT----TAATTTGCTGTCTGAATTTGTTAAGATAAT----AAGCAGGTTCTTGAGCATAAAATTTATTACCTATTGCTAAAGCATGAGAAGACATACCATCTCATGTTACTGC-TGCTTTATGCATTCAAAT------TGCTCTCCAACTA-----GAATCTGTAAGTGGACCTCTAAATAGA--CTGTTctgagatgtactgttttctgtcaaaactc--atgtgggagcttaagtgccaaggcttcagaacgtaattgctttgggaggtagg------acttttaagagagtgatcaaagacaagctgattgggagatccctaataaaat-tgatgggtatagttatgagaaaagaaaatttca-tataaagtaataccagagccatg--------tttataaaaatagtact-tataaaccaagaagagatctcaggaaaaaatcacac---------tggactcagatttctagcttccagaaaagagaaaaagca-atttctgttgtttcaac
s HiC_scaffold_1 145841497 3412 + 233722169 tttatattttatc---caaatatttcaggTTTCATTCCCATGGAAAAGGCACCATCAGGACATTTTGTGCTTCATCttgacagtaataaaaatcacataatttgtttaaaattagaaattcagttGTTATGATGACATAT-TTTAGAAGAGACCAAAAcaagtt--ttgaaattatttaaaacaatgacattgtatttaaaaatctgGGAACTCTGA--CCTTAGAAATGCTAAGTCTGTTCGCCGTTTAAGAGGCTCAGgtagaaagcaggaaagaaaagattcactTTTCATTGTTTCCAA---TGAAAGTATTATA-------------TCAAagcatta--ttttgtattatatctaAGCATTATTGCtaagaatata---tattattatttcagGCTCAACTAAGG-TCATTAAATGCCTACACCATTAGCATAAAAGTGATAAGTTGAGAAGTAGCTGTCATCAGGTACTTTGggaaaaaagtcaataaaagaGTACATAGATTTTAACCAAGAAATTCCCATCATTTTCAATATTAATGTAGTcaagaaatttatttcacttggcagAATTATTCTATGAGCAAGCATGGAGACAAATAAGTCTATAACTGTGGTGAAGAGCCAGAAATAAATTAAGAGCTTAAacgataacatgacaaag--ttggtAATTTCAGCAAGAGTATTTCTAGAGAAAAATTTCACATGAAAAACTATCCATCTGCATGGGCCCTCCAGTCTCCTTCTGGCAATTATTTTCATGTCCTGTGCATTCTCTGCCTTTATCCTACCAACATTCTTAACTGACCT----AAGTTAATATGATTGT-TTGCTAACTTAATTCAATATTATTCCTT--TACATCTTttacaatatttcttttataaaaggaCTATCACTGAAAAACATGTATGCATTTTCTTGTGGTAGGTCAGATA-ACAGCACCTGCATGAGAAGTATCCTTGGAAGATTTTGTGAAACTGAACAACAA---------CCTAATTCCTTCTGCATTTGATTGTGTATGTTGTTCTCAAGTAATCTTGCACTTGGAAAATATCTTGAGGCACTAGTAATTCTTTGCATGAGATCATATATTCATAAGATAGTACTTTTATGTTTCCAAC-AACTTCT---TTTAATG--------TTCTGGATCAGTCATTGTATGTTAAAAACATTATTATGCTTTTAGTCTTTCACATTAACTATACAGT------AGGAATA-TCATGGCAGTATTTATCACCATTAGTAAGACAGAAATGCTGGAGAAATTAGGTCAGTGTGAATTTAGGTCAGTAGACAGTAGCATGCATGTACTCACACACATACATTGCAAGGATCCAATCTGGCGTTTATAATTGACCGTGGATTTTTACAGCAGAATGAACCATTATGATCTGGTTTCTAGCTAAATATTAACATcttgtcctttcctttcttttcctttgttttcttttctcgcctttccttctcttctttttcttctatttttctataaCTATAGCATAGTGAAGGACTGTGGCACCCATTTATGGATGCTGTTCTTTACATTATCACTACAAACATCTCAATTATTATTAAAATCACAGGCCTTTATTAACATTTAATAAATCTCTAGGATCTGAAGCTTTG--GAAAGATGCAAAAT-TCTTTTGCAAATCTGCTTTTCACATTGAGAGAAATCCTCGCATTAC---TTTTGTTAA--TAACCAGGGAAGCT-TTGTTATGAAAATAAAGTCAAAGA--GGATgacttcataatttaaaaaaaacattctttCCCATCCATCCACTCCTATATATTAAATAACCTAAATGCTATTCTTCCAAATATTC--ACAGTATCATTTTTGATATTAAATTCAAAATCCTGACATGCTGAGGAAGG--AATGCACTATTGTATATGAGTCTTTAATTAGTACTCATGGTATTTACTActtct------ttctttagttttatatATTAGTGACTCCAAGAAAAGTCTAAACTGTGTATTACAAAGTTTTCACGTCAGAAATGAGAATTATTAGCCATTCTCTT------TTAATATTAGAGTTATTTCT---------CATTAATTGATAgtgataata---------------aaattttcatt-----gtcattttaataaaatt---------ttatcacaacattaaa--------------aacatcataattcTGTGAAATCAGAATGCTCG----ATGAAcact--------------aaattatatatt----------ttgg-----ggAAGAAat-----------------actggttta------------aaaaaatg--------------gCTTGG--------------------------------------------------------TTAAGGAGGAAGAGGCTGGATTACATCCT---------------------------------------------------------------------TGTTCAGAGAAATTAc----acaaacaccccccccccaaa----------aaaaaaacaaagggaaa--tacTTAGCATTTTTCTGG-AATACAGTCCCTATTCTGA----ATATAGGAGCTGAGAGaacactgaatgaatgaatgaaaatctagatgtaaatataaatgaatatatttcaacACGTGTTTCCTGGTCAGATACTGTG---------CTCACTCAGTTAAATCTGAAGGCTATCTGTCTAGAAGTACTGTAATAATAAATGCTAAAATATAAACCAAAGATTACTGATAACCAAACATCAATATTAATGCATG-------CCATGAAAACTCTCAAACAAAAACTATTTGGAAATGtaggagcaaaataaaatcattatttccCTTGGTAAATGTACCTCAATTATAGTAGAAAAGtcagaagataaaaataacaaataaagcAATCCTTGTTTCTTCAGTGAACTTTCATTTACAGAAAATTATACTGTTTCA---------------ATCCAATTTAAGAGTCTCTAAAAGTCATCAACCAGTAACTTTTGCCAGCACTGAATGGAAATGGTATAATTTCTAAACTTTTGACCTATCATGGCA-CTTCTTCCATACTACCTTCATTATGTAAGAGAACGCTAGCAAAATTATACAGCCCGACACACAGACGCAGTAATAAGATCCTGGATAGCAACTTAGGGGTCTA-------AGTCCAAAATATCACCCATCACTAAAACTAAGATTTTATTAGATCTTGTACTTCAATAAGTAGCTTCTTACATTTGATCAATTAATCAAGAAGCAGGctcttgattaaaaaaatcatttaatatcactgaaacatgaaaagccatagcAGTTCAGATTATCACTTGTTTTGTGCTTTTAGATAAAGCCTGTTATTCAataatcaggaaaaataaaagt-aacatctTAGTAGAGTGTGTTCTAGCTTAAAATGTGCCTTGCCAAAATTCGTATGTTGAGGCTTACGCCCCAAAGCTTCAGATTGTGACTGTATTTTTGGATAGGgtacatatttttcaaaagatcaTTAAAACCAAGGTT-TTGGGGTCACCCTAACCCAATGCGATCAGTGTACTCATGAGAAGGT----TTGCACCGTAAAGCAACACCAGAAGCACGGGAGGCTACCTGGAGAAGGGGCCCTCTGTGCACCAAGAAGGGGGCGTTCCACAGATACACCCGGAGCCTCTTGTTCTTGGATTTCAAGCCTGCAGAGCTGTGAGGAAATACATTTCTTTGGTTTGAAC

a score=15654
s chr3           158474411 1203 + 160039680 AATTTTAAAATATCAATTATCAGCATATTTACGTTTGAGTACATTTAGTACAAAAAGAAGTTTCCACTTT-------ACTGTAGCTCT-GTGTGTATCTCTAGCAGTTGATCATCTAG--TTAAAAAATTTACATCAACTGAGCC-CTGGGTACACCATTTCTATCATTATTTAATATAAATTCAATACCTGCTTTTCTCCTCTTTTATAAGTAGAGATGTCCACTTACATAC-AACTATCTGCA-CTGCAATGAGGAAT-----CAGTTCAAAAGCCTTTCTACACGGTCAACA-TGGAAGCAGGAAATGCCGATCTCTTGATCTACTGTGGTCTATTTGGAAATGT---GATCTGTCACATCCCTATGGTT-------GGTCACATATTTCTGTTTATGATCCTTGGTTCCAAACTGAAAGCATGATGGCTTCAGTCACAGGAAGCAGCCACATTACATTCAAAGTACACTTTAAATCTTTTTCAGAT-------------------TTTAGTTTGC-AAATGAAAGATGAAATATCCCTCATTTATCAGCTAATGTACAAGAAAATACCTGAATATTTTTGTC-AATCTTCATATAATTTGAAGATGTTGTTAGC-----TGCCTTATGTAACTTTTCTTTTC--CATTTAGAGCTTCAGATTTGTTCTGGGT---AATGCACCTAAATACTAAAAATC-TATCTTTTAA--------GGATCTCGGAGTAGCAATGCAATCCACTTCAGCCACACATCAAAAGTCATCAGGGGACTCTGGAGAGGTCTTTAAAAGTCTCTGTTGCCCTTCACCTTTTGAGTTTTTCCTGTCTGTAATGGGGCCACAATGGCCATAATGTTAGTATATGTAGCAAAATGAGTGTTTGCTGGTTTGAGACAGTTTGGGGTGATTTAT----ATTCCTTACACTTTA----ATGTAATCCATAACTTAAATAAATATCTAGGTTGATAGAGTATTCAAGCATA-------TCTGTGAACTCTTTTACTTAACTCCATCAAATATTTATCAAGTGGTAATTTATCACAGAAATCAGAGCAAATTCATAGCTTTCTTAAGATGCCTAACATGCTCCAGGGATTAATTTGTCTGCTAGTGAAAGAAGCCCAGTTAGCTGTGAGATATAGAATTCTGTGCCCTACTGAGAAGGAAACTTGAATCCTGATG----------TGGTTCCTGA------GCAAATTTCCTTAAAATACTGGTGAGTGCTTCTGGTCTCGGTCATCTTGATAATTTATCATCAGTGTCTTTgggttttta
s HiC_scaffold_1 145849667 1144 + 233722169 AGTCTTAGAACACTGTTTGTAGGTATG---ACTTCTCAGctcaacaaaaaagtaaaaatgttttcattttggcAATTACTGTATTACTTGTGGatgcttcagtttctttattttcttgctttaaaaa---tataccaaCTGGCCCACTGTCTCCTATATATCTAGGTATATCTACTCAAAATTAatca-----tttcttgtttctttagaAATAGATGTTCTCATCGATATATGAAGTGCCTGTAATTGTATCTTGAAACTTTAGCAATTTAAAGGACTCCTTCTGTGGAAAACAATGTACACAGGAAGTATTAATTTCAATATC-ATTCTGATCTTATTAAGAACATATGGCCCTTTCAAGTTTCTAAAATCAAATCAGGGTCA-----TTTTATTTCCACAACTGGGGCACACTCTGAAGATCTGATGGGCTCACTTACAGAAAACACTAACATTA-GTTAAAAccatattttaaactatttacaagTAGTATGCAATCCTGGTATCTTTAGTTTATGAAACAAAGGATGAAGT-----TCTTTGAT----TAATACACAAGAAAATGtcagaatatttttatctaaaCACCATA----------ATGTTTTTGACAACTCTGCCTTACACCATTTTCCCTGTCTTCACTAAGAGCCTTAATTTTGTTCTAGCTGACAATGTGCCTCCAGATAAAACCTCATATCCTCTAACTTCCTATAGATCTAGG-GCAGCAATATGACCAACT---------------------------------------------------------------------------------------------------CAGTTGCTATAGTAtaagtata-----aaaaattaaaacatagtgATTTGAGACAGTTTGGGGTGATTGATTGATAATCCTATCAATCTATGGAACGCAATCTATAACTTACATAAATATGTTGGTAGTAAATGTATTTGAGCATACATATAGTCtgtgtattcttttatttaac--cATTAAATG------AAGTAGTAATTTATTGCAGAAATATGCGCAAATTCACAGCGTTCTCAAAGTGCCT-ATTTCCTCGAGGGATTAATTGGCTCACTGGCTGGATGAGACCAATTAACCATGAGACATGGCATATCGCAACATCTT----AGGAATCCTCACCCATGAGGAATGGCAGCAGGGTGGCCAAGTTGACGCCAATCTATCTGAAATACTGGCTGACATATCTGGTCTGGGAAATTTTGATAATTCATCactaaag----tgaattttta

a score=12250
s chr3           158478520 689 + 160039680 ACTTTCTGGAGTGCTGGACCATGGGGT--TCATTCTTCATTACCCTCTTTCACAAGCTTTTGAAGAAGAATCCTCAAGTTCAGTGCTT-CAAGGTCAGGCCAAGACA-------TGCAGCAGGCAACT---TCTTCCTCTTTGTTTCCAAACAAAGG------------------AATCAGAACTGTCAAGGATGTCAGTAATCTCAATGAGACAAAATAGAAACCAACCCCTTGGGGAGCACTCTAAAGAGCTGGAAGTTTTAACGCACATGTCACTCTTTTATTCTCCCT-GAGAGAGGACTGATTAGAGACATGGGTAGCCTCACAGGGTCTGATACCTGCTAATCACATGGCTCATCTTTCTCAATTAACCATTCTCCTCAATGTGCTTAACTGGGATGATGTCACTTTTTAATTGAATTTTGAAAATCTCAAAGTGATGATTCATTCCATATATTATTGCTAAATTAGTGTTTCCGTGA-TGAAC-AAGGACGTAGACTTTGGATTCAGCCATTTTTTTCTAACATCAGTCCTCCC-ACAGTGCTTTTGACTTTTAAAGGCACTATTCAG----TTAACTGCCAATGCTTTCTAAAATAACTTTGGCTGG--TAGAGTAAGTCACAATTTTAAAAAAGACCTCAGAGTTGACAGGTGTAGTTGGGTTTTCAAAGTTTTATTATGTCCAAAGTGGGTGCATCATTTTAATTTCAACCATAAAAAAA
s HiC_scaffold_1 145856360 691 + 233722169 ATCTTCCAAAGAACTGGAACGCAGGATATtgtttccttccctcccccttttCCTCACTGAAGGTGATGAATTCTCAAACTGTGCACTTTCTTGTTCTTGCCCAGACAGGAGGGCTACAGCAAACCACACCATCCTCCCCTTTGTT------CAAgggccccccacccccacacccaAACTGGGCTGTC-------TCAGTGTTCCGAATGAAGCAAGACAGAAAGCAGTCGCTTAGACTGTCCCTGAAAGGTTTGGGAGTTTGGAAGAACGTTTCACTCCTTTCTTCTCCCTTGACAGAGAAGTTATAAGCT-CGGGAGTCTTCTCTCCTGGCATGGGATGTACTGGCTTATTGGAAAACCTGATGCAAGTGAAAGAGCTCTTCA----------------------TACCTGCCAACTGAACTCTTGAATTCTCATTGTTGTGCCTTGTTTCTCACATTACTGTTAAACTGGTGTTTCTTTGGGTGAACTGAGGACTGGGACCTCCCTTTTTGCCACCTTG--CTGACATCAGTCCTCCCCATGGTGTTCCTGTCTTTCAACA-CACCATCCGGAGTTTTATCGGCTAGTCCCtttgaatataaattttagtAAAACAGAGGAAGGCAACAATAGAAGAAAAATCTTTGAATTGATAGATGAAATTGGATTTTCAAAGCTCAACTGTATCCAAAAAAGATGCATAATTTAGatctcaactataaagaaa

a score=25245
s chr3           158480033 3115 + 160039680 CCTTCCACTGAAACTTATTCTATTAAATAACCTATATTTCTTTAGATAGA-ATGCACACTTGAAAAAATAGATGAAAATTATG-AGGAAAGTATTAAGGGATTACTATTGTTTTTGTTTCATAGTTTATACCAAAGGTTAGTTCTATTCAGGTAGCAGATATCAGTTGTCACCTGTTTATAAGGAGTTGTCTTTCACTACTTATATTCATAAATCCAGACATACCAGGTTGTCTGCAGGGGGTGGTGGTGGGGTGATTTAGCTGAAAGTCTCAGTCCATAACTCAGAGTTCAACATCTGCACATGTCAGCACTGTTGTAACTTTTTTATGAGGATAGCATTGCTTCTAGTGGCAGCTATAATGGGGTGAAAAATGTGGGATGATACATCTGTTAAATTAGGTAAGC--TAGCCATAGCCAGAGTAATGATGCTTGCAACACTGCAATCCAATTCTGCTTGGATATCTGTGATCACAAAACATCCAGAGTGAATCTCAAAAAGAAGAACTAAAATCTTCTCACTGTAAGAAATCATAAAACATTCTATTTAAAAGACATGGTTGTTAGAGGCAATAATTGAATACAAAGCTTAAGGCATAGGCATCAAACACAGTCTAACTTTCAGACAGCCCCATGTGTATATTCT-TTCTCAAAATTtttatttgtattattttctgtgtatgactattttgtctgtatgtatgcctttgtatcttgtgcttgcctggttcttagcaaggcttgaagagagcattgggtactctagaactggagttaccaatgattgtgagtgtccatgtgggttcaggctactgaacatgggtcctctggaagagtaagcagtgaaccatctctctagttcTTCACCATGAAC----------GTTTGATGAATATTATATACTTGTATAAAACAATGTGTTTCTCTGTAACAAATGAGAGATGTCATTGCTTTTTGTGTATGAATAAGCCTTTAAAGAATGTTCAAAAGTG--TTTAAAAGTAAATCTACTCTC---TACTTATAAGGAATAAATGAGATTTATAGTAGGATAC-AGAAAATAAAATTTCCTTGAATAAAA--AAGTAGAGAATAAATAATGAAGTGATAGTGTGTCTGTTGTGATGTGTTTTCTCCTTGGCAG--AGAGCTGGAAAGCAGTA---AATTAACACTCATCTTGAATATTTACTTTATGCTGATGGATTCCTTAACTGCATCTTGAGATGTTTT-ATTTATGCTTGCCTGCCATGATTCATGAAGTTTTCAAATATGTGAAATCCCACCTGGGAGCCTGAGGCTCCTGCAGTTGTAATTAAGGCCAGG--TATCATTCTGAGGAAGTCCTTTTCAACCCCTTCCTTTATGGTAAGCATTCCATAAGAGCCTGGTGAGTCCCTGGCAATGTCTATATTGCTTGCAGTATTGTCTGGGGGCAGTTTGTGATTGCATGAAGGTACTTGGTTTAGAAGTTTTC---CTATGTGTAGGGAACATGAAAGGGTGTTATTTTGGTTTTGTTTTGTTTG--------TTTTTACTTAGCACAGTGTGG-----TATGCAGG------TCTTGTTATCCTATGTCCTGCATGGTACCAGAACTTCTAAATTTCTTCCTAATCCCCACCTTTAGTTTCTTCTGATTGCATCTTTAGTGATGTCCTTAAACCATTTCTTTAATGTAGGAA-------AAGATGCATC-------ATTTTTG-----TCTAAAAGTTTTAATAGTTTTGTGCAGTCTATA--TTCAATTACCTTCT-----TTTCAGACAGATCTTTGAATTCTGATACTT-TCCACCTTCCCTGCATT----GAGATTCATTCATACCTCTGGTTAGGCAAAGCACATTCATTACTTTCTTTACTTCACAGACTTAAAACCAAGCCCCCTACCCTGCTTCTAAATTGAGGAAATA----ATAATCAATAATTTTGTAGGTCTTG--------TCTCCCAGGTACTGTTCTAGACAT-TTTTATAGGAGGAAATAATTA-----GTTGTATCTATTTTACAGGTGATTAAAGTGAGGTACAG-GTGACAATGTAGCTGGTATAGCATTGCATGCC---TAACTCATTAGCCAAAATGTT-GATTATATACAAAGCAGGTTGAGAATCCAAGAACAACCAG-----------------------------CAATATTAACAAC---AAATCTTTACCTCT-----TTATAAATACACCTTTGCCCTCTCAAAATAATATTTTCTCATTACTTCCCATAGATTTTCTAAAATCC-----TCAAAATTAGCCGATCTGCCCACTTACACAGACATGCAAATATACTTTCTGGACTG------------TTTAGAATACATCTTATCACTTATTTAACCACGTATCTCAGAATCTTAGCAaacaacaacaacaaaaccccaaaacaacagcaacaataaGTTAGATATT-TTTCATGTACAGTCACAGAGAAACTAAATACAAGGGAAATGTTGATGGAGGAGGTGTTGCTGAGAACCAACAGTTCAAAGCAGTGGAAAACATTCTCAGGCCTAATGAATGGAGACTGGAAGAAAGGGATTTCTGAAGCCCAGGGTTTTTGTTCCTTGGGTAGAGGCTGAAACCACA------------------------AACCAACATGGAGAAATAGCTGCCACTGC--ATAACCTCTGGTGGCAGGGGATGGGAGTGA-------CCTTCTCTGTTCTT-TTTGGCTCCAGTCTTCCTT-----TGGGTAGGTTCATATGGAAGCC--------AGCTTACTTGC---------------------------------CTTGCCCTCCAG-----------------CATGTCTTCTTATGCAAGGC----------AGAAACTCCCTGG---------CTCTTCTTACATTCTCCCACCAAATCATATTATTAAAATTTTGTAACTCTGTAGGCATTGTTTTCTAACAAAGTCAATAATAATTA---------CAATCAATTAAGGAGACTGACACTAAATGGTACACATATTCCTATGTGAATTGGCCTGG------------AATTTC----TTCCCATCAGTTTTATTTTTTTATC---------------ATGTTTTTCT---ATATTAAACTAGTATTTGGTGTAGCTCCTAA-CATGTAGCAGGAAACACATAACTAAAAAAAAATAACAACTACATGG---ATTAAAGTTCATTGAAATTAATTTGAAACAAGTATTTTAAAGTAAACCTTCTAAAAATGGCACACCAA----TGGAAGAGATTTTCATCAGTGTTTAGAAAAATCTGTCTGAAAGTCAGCTGTATTTTATGTATGAATATGTGGATTGCATCTGGCTTGATAGAGAGGCCAGGTGACTTTAGA---AAAGAAATAAAA
s HiC_scaffold_1 145857128 3098 + 233722169 CTTTCTTCAGAAAACAACTTTGTTAAATagcctacattt-ttaaaatagatatgcacttttgaaattctatatgaaCAATGTGTATGCAATTACAAAG---TTGCTATTATTTATACCTATAAGTTTATAGAAAAAGTTA--TGTATTCAGGAGGTACCATTCACTCGTCACCTAATTAGAAAGAGTTGACATTCATCATTTATCTTTCTCAATCTAGTCGTACCAAATTATTT-CAAGGGCTGAT----------TCAAGCTCCAGGATTCCGTCTATAATTCTAGAATTGACATCTATAC---TtatcactgctataaattttataTGAAGATAGCATGTCTATCAATGGCAGCTTTAATCAAATGAGAAATGTTCTAAGATAGTCCTATTGAATTAGATAAGCTATAAACAGTGCCAAACTAATGATGCTTACAATG-TGTTCCCAAATTCTGCCTAAAGATCTGCAAAATTGAAGCATGCagagtatattttaa----aagaattaaaattttctaatgGTAAGAAAGTGTTCAATATTTTACACAAAA---ATCTATGCCTAAAATATCAATTG-----AGAGTTGAGTGTgtagagaacttgcctag-------------------catgtgtaagccCTGGGCTCAA--------------------------------------------------------------------TGCCCTCTactgaaaaaag---gaagaaa------aatatgaaagaa--aaaaacactaat---------------tGTAGCTTGAAGGCAC---ACATGTATC----------AAACACAGTCAA----------AAACCTTCACATGGAACCCGTACCCGTGCTTGAAGAATGTTCT-TCCTAATATGAAAAAGTATATTCTTCTTCTACAAGTGAGAATGATGCTTGATGCTT---TATGAAAAAGTCCTTTAAGAATGCTcggcagtatttttaaaatcaaacttgctttcttttttttatgaggATGACATAGA----ACAGTAAGATGCAAGTGAAAGAATTTTccttagagaaaaataatgacaaaataaataataaa--aatattgattttg-tGCTATGTCTTTGAGTTTCAGTAGCTAACACTGCATAGGAATACTGAGTTGACATTTGTCTTGAAAA-------AATGCTGATGGGTTTTCTAACTGCATCTTCCAATCTTTCAAAGCATGGTCACTCATCATTATTTATGAAGT----------------ACTTTCTTGAGAGGC-GATCCCCATGCTGCTGTCATGAAGACCAAGACTTTTCCTTTGAAGAAGTCTCCTTGGACATCCCCTTTACTA--AAGCAGTCCTTACCCTCCCAGTCAGACCCTGTAA--GTCTGGAGATGCTGAGGTATGTGTTGCAGATTGTTGTAAACTGCACAAGGACGCTCAGGAGTGGGGCTACCAAACCATGTGTA-CCCGCATGGAG----------CTGCATTTGTATGGGGGGAGAAAGATCTTCCAGTCAGCAGAAAGGGAGCAGCTATGCTAGCAGTGTTCCTGTTGATACCTGTCCTGGAGGTTAAAGGTGCTTTCTAGATTTCTCCTAATCTCTACTATCACCTCCTTCCAATTCCACTATCTAAACTG-CCACAAATTtattcctgaaaaaagaaataaaaggaaaatacatctAACCAAAGCCCTGAACTATTTAAGAACCTTGGTAATTCCTCATactctgtatttttaattatagttTATATGTCACACACAGACCTTCAAGTCTTGGTGCCTATTAACCGTTCCCTCAGCAAGGGAAGCCTGCTCAGAATCTTGGTTAGGCTTtgcagaaata-aattttcctcactTGCCAGAGAAAAAAGTAATGCCCC-------CTTTAAAACGGAAGAAACAGTGCATGAACAACAACT-----GAACTTGGGAGAGTCTACACCAGGCACCATCTTGGGTACACTGTATGAGATAAAGCAGTTCCTGCTGTTATTGCCATTTCACAGATGCATAACTGGAGGCATGGAGAGGTAAAGCAGCTTGTAGAATGTCACATCTCCTGTGAGTAGTAAGGCCAGGTGTGAAAGAATGCAGAGAGTGAGACG-GAATCCAAGAATACCTGGGTGCCCGCATTCTAACACTAATAATGCTCCAACACTGAGAACCTTGAAACGCTACCACTTCATGTTGtagataaatctttttttttt----------ttttttcggtctttttctt---ttttatcagtaccagggatcgaactca--cga-ctgcctgcttgca-agacaggcacctatgc-cgctgggctaaatccccagcccctgcagataaatctt------------------tacttcatttttctagcAAACTATTTCAA-----------------------gataatttttatatcattttgtggTAATTTTCTAGGAAATCATTTTCATA------------GGAGGAGGTGAGGCACAGAAAC-----TCCGAAG-AGGCCAGGATATGCTACAGTCAGA-------------GAAGAGACTCCTTTCTGGAAGCCAAGTTGTCATTTCACCTGGTAGGAACTGAAACCTCAGGGGGCTTGTCTGCCAGGACTCTGAACCATCATGGAGTCAGACCTGCTACTAATGATGCCCCCTAGAGACATGAAGTGGGAGCGAAATCCTGCCTTCTCTCTTCCCATTCTTCTCTAATCTCCTTTTCAACTGGTTAGCTGCTACCAGAAACCTGATAATAGGTCTCCCTGCTGAACTAcaggaggatgaagaggagggCAAAGACTGGCTCTCCAGGCACAAGAGGCCCAGGCCCTGTACCCCTGGTGAAGGTCTTACTCTTAGGCCACATTCTGGAAGAGTTCCCTCTTCTT---TTCTCCCACACAATCATACAATCCGTACTTTGAAACACCTTGCGTACTG-CTGCTAACAGAATTAGTAATAGTTAATGTGTGAGCAACTAA-CAATGAAACAGATGCTAAATGTTAGACACATTCTGATTTGAAATCCCAAGGGTCACTGaaacaaatttctgttttcttctagatGCTGTTTCAGTAGCTAAGTGTGCATGGCTATGTTCTTCTTTATTATTAACCTAATATTTAGAGTAGGTCTTAACCATATATTTGGGAATTCACAATT------------CTTTTTAATGGATCATTAAAGTTCCTCAAGAATTAC------AAGGGATTGCAAGGCAAACTTCTGAAAAATTTGTCATAAAATCCTAAAGGTGTTTTTCACTTGC-TTCAGAGAAAATTACTCAAAGAATCTCTAATTTTCATTTGTGCATATCTGGATTAc-tctagctagctagctaggtTAGGTGCATTTAGAGTTAGATAAATTAAA

a score=19253
s chr3           158499021 1369 + 160039680 AAATAAATGCAAAGCACCAGCTCTTGGGATGTAGTTCATA---------------AAGCAGTTGATTTATGCTGAGGAATTAGATATCCTGTCACATAAACTTGCTGTATCTCTTACCCAAACTCTGTGTCTTTGGTTATTGCATCAAAGTGTCCATTTTCTCAAATTGGGCAGATTACCTCTGGCAATATATCATCA--CAATATCTGCAAATTTCTGAAGATTGTGACAAAAGCGTCTCTTGTCT--TGGGTACACTTGAAACACTAACAGCCTGAAAGAATTGACTTAGGCCAACCAAATGTTGCTTAATTTAATTGCCCTTCAGAGGATGTTATAAGATCACATCTGTGTGGTTGATACTGAATTTTTCCCTGAAGGAATGTCTGATTTTTAGTCCCTTGTACAAGAAGCAATTGACCTTTGGCTGGGATCAAAAGCCAAAGAGGAAGGAAAAGCCCTGTTGCCTCCCTCCAAGGTTCACATGGCAGAAAACCT--AAACTGATAGGCAGGGTACTATGAATATTCACTAATGTAGACAAGTTGTTTCCTGGTCAGAAGAGGTGGAACAAGGAGCCAGACTTCTCAGTTATAGTGGTGAAAAGAAGCAGGTGCCAGATCTGAGCAGGCCATTCTCTCTTACTGGTCATTT----AGAATGTAATTGCAAGCT--ATATTCATGCATATATTTAGTACCTTTGATTTTCACTTGTAAAATCCAGGAATACCACGATATATTATATATTATAGAAAATTGTTAGGAAGAGCTTTTCTAAAATTGGCAGAG--GTCTTTCTGAGGCCATGGGCTTCATT----------------AAAGTTATGTATTATTATTTTTACCAACTTAACTTCAAGATGAG-TTTTATACAGTTCCCTTAAATCTCTCCATTCTCAACTCAACCTCAGGTCATGAGTCTTTAACAAGGGCC----ATCCCTTATGATGGAGTTGCACATGCTTGGATATTTATGTACAACATTTATCATC---ACTACCATTTATAGAATATCTAAGAGTTGTTCTGAAATGCATACTAGAGACACTAGGGATAAAATAATACATAATTCATAGGTTCTTAG-ATAAGAAAAATTGTTAACATTTAATGACCTTTTTTTTTTCTTT---CTGACAGAAATGGTCCTGAATCAATGGAATGGCTATCTGAATACAAGGACATTTGGAAACTGATTATGAAATGAATATACAAATCA----CAGACGGAAAAAGTTCTG-----AAATGAACAATATGAGAGCAGAGAGCAATGGATTAGAAAAAACACCCAATCGAAGCGTAGTCTT-----GCAGAATCTTCCACTCAGCATCTACTAATTAATAATCATAAAGTAG-GAGAACAACA-GCAGCAATCACACAGAACATACATGATATGGTGACATTAGGTAGGTAGAAGTTG
s HiC_scaffold_1 145881104 1379 + 233722169 aaataaatataaaacagtcAGTCTTGGCTCATGGGTCACACATCATCAGTATGTCAAATGGTTGCTTTGGACTCAGAAATTAAATGTTCC--------AAATAGTTAAACTTATTAGCAAAGCTGTATGCCTTTGGAATTTGGATAgaaatgtcagtttcctttcagtTGATTGAGCCTATTCTACAACAGATCATCAGTCCATATC---AAATCACTGAAGATTGCCAGGAAGACATCTTTTGTCTCATAATATCATTTAAAACTCTATAGTCCTAAAAATAGTCATGTAAGTCAACTGAATTTTGCTTACATTAACTACGCTTCTGAAAGTTTTCAAAGATTATATCTCTCTGGTTGGCGCTAGA-GTTTCCCTGAAGGTATG-------TTCACTTCCCTTTCCATG-------TTATCTTCATGACAGATGAGAAGTTAAGCTTAAGTTGAAaaactcttcctttctttttaa-----aaatggctgcAAACCTGGACACTAAATTACAGAGATGCTCCAAGAGTCCTAGGAGTAGACAAGTTAGTTCCTGACCAGGGGAGCCAT-CCTAGGATCAGGATTACTCCCATGTAGCCTTGAGAAACAGAAGAGGTCAGGTCTGA-CGTACTCATTTCTTTGAGTAACCATGTCTGGAGAGTG-----GCACGCTTCTCACTGTTGAGTTTATTTAGTACC-TTACTTTCCAGTTGCTCGAT-TGCTAATACCATAGTGTCTGATATGTTACAGAGTATTACTGGAAAGGTATTTCATGCACTgggaaaagatatatttttaaagcactatTCTTTACCCTGAGTTTGTGAACCAAAagccattt-ttgttgtttttaccaTTTCCACCTCAACGTGAGTTTTTATACAGTTCTCTAGAATCTCTTCGTTCACAGGATAATGTCAAGTCTTGGGT-TGTAACAACTGCCAGTAATTCCTC------GGATTTCAAACCTTTGGACATTAATCCACAATGCTCATCATCTTTTCTTTCAGTTACAGAAAAATTTTGAGTT-TCCTGAAGTCTTTATCAGCGACCTAGGCCAAAGAGTAATGAATTATCAACAGGTTCTTAGCaagagaagaaattttattttttcatgaccTCTATCAATACAGTAAAATGTAAGAACTAGTGCTGAGCTGA--GAAT--CCACATTCACAAAAGGTCATCTGG--ACAAGTTTTGTAATGAA-GTGTGAGTTATGTGTGGACaagaaagtttctgtctcagaattagtgaca-------agggaataATGATTTAGAAAAgcaatttattttctgtgtgataCTCAGTATCGGAATTTTCCACCTATCATGGGATAATTAGTTAACtgaaaaaagctagaaaaatatTCTGCAATCACACAGAATGAAAAATGTATACAgaaattattgagagagaaaatg

a score=37458
s chr3           158507170 1399 + 160039680 TGCACTCATGTTCTTATGTGACTGTATATTAGTGTCTTTCACCTTGCTTCCAGAATGTGTTTGGTTTAAAATAAATGTACTTATAGCTATTTCTGTTTTTAAGAAGGATTTATTGTTCTCTTTTATTAATATTTGGAAATCAGAAAGCTGTCAACATTGACATGTAAG-TCACTGGTGCCTGTCCCAAGCACTGTTAT----GTTATTTTTTTCTTCAGAGTAACTTCTGCACCTCTCTCTCAGCTTGAAAAGA---------------------------------------GAAGGATCAAGGAATATCCAAGAATA-CCCAGAATCCTCTTGAAAAAAATTTATTCATCAGAA-TATTG-CACAAGGTCAATCATATCTTCCAAGGAAGTCTGGGTAAAATTAAGGTCTTGTTTTTAGCACTTGTTGATAAAAGTGGTAAAGAAGTAGAGGATAGA--GCTGGTTTCTACAAATGCATTTATATATTCTTCATAAACCAGAAAAT---TAGTGATAAAATCTAACTGTGACTTGGGAACAGAAATAGCAATTGCATGGATTT-TAATCCATTGTAGTTATATT-AATCTGATTTTTTCTGTACCACTTATTTGGTCAAAAGTTGAGACAATCAGAAGAAAATTAAAGACACAGAGACTTACAAATAATTACAAATACAAAATGCAATAAATTCAACTGGTTCTATTGTGTCCAAAAGGATAAGTAGTGAAGAAGTCTGTATGTCAAAATGGGTGGCTTACATAACCCTCACGTACTGCCCAAATTTGTG---AGTTGTTTCTAGTCAGTCAAGTAATTAGAGTCACCTGGTGTAATTAGCAATTCCACACATTGCTGCAGTAAGTAGATTAGTTGCATTTTACAAATAAAACA--TCACACAAATTCTCAAATTTCTGTATCCCTGAAGTCACATGGAAGTTAATAGGAGAGCTGAGATAAGTAATCAGTGCCAAGAAAGGGAACGTGAAAGGAGACAATGAAAACTGCCTGAAGGCAATTTCAAATTGCTCCTGATCCTTCCTGTGCAAAAGTACACAGTCCAAATTGGCATTCAGTCAATGACAGCAACAAG-CACAGTGGCCAGGACAAATCAAAGCTTTATCT-CTCCCAGTGCTAACAGCTAACAAGGAGCACATTCCCCAACTGATCTGCATCCAGCTTTGGCGGT-------CAAGAATCCATCACACAGTTATCCTGCACTTCAACGTTGCATTTGATTGCATTTAGTAATGCTTGAAGTAAATTTGATCATGGCATTAGGTTTGGAATGAACATATACTACTA-----CTACTACTATTCCTCATAGTGTC----ATCACAAAAAAGAATAAGAGTTTGAGCTGCCTTTTACTGA-------TAATTTTAGTATCCTACAAATTACTTCATGAGCAAAGAT-----ACAT------------------AACAAATTCTCATGATAACATTTTCTCGTAAGGACTTTGTGCATAT
s HiC_scaffold_1 145888175 1421 + 233722169 TGTGCTcatgtctctgtgtgtatgtgtgtgagtgtc----atctt-tttctaaaatttgtttaGCTTAAAATAAATACACTGACAGTC------GCCTTTTAAAAAGACTTCT---------------AAATTCTGAAAGTAGAAA-CTGATGGTACTGATAAAACAGCTCCACAATGTCAACTCCA-------TTATAACAgtactttttttcctcaaaaagcCTTCTGTAGCTTTCTCTACATGTGAACAGAAGAAACAGTATCAGTAGGTCCTAATTGTTTTACTATGCTGGGAAATCACCAAAGATCCAAGAATTTCCCAAAAGCATTCTGTTCAAGTTTAAGTGACCAGAACTATTGTCATGAGGCCAAAAGTAGCTGC-AAGGGAGTCTGGGAAAAATAGAAA-CTAACTTGCAGCCCTAACAGCTGCAACTGGTAAAGAAGAAGAATAAGGACAAGTGTTTGCTATAAAAGTGTTTATAAGTTCTTT------CAGAAGATATTTGGTGATAAAACCTAACAATGTCTTTAAAGCAGGAAGAGTAGTTACATGCATCTCTAGTTcagtatatttattttcagtgtgaTTTTTTCTGTATCATACATTTGAGCTGAAATTGGAAAAATTA-------CTTTAGGAT-------cttataaatgcataaaaatacaatat------attttggCTAGTTCTGTCATGCCTGGTGGGATACATTGTGGAGATACCT--ATGTTAGATTGGGACACT-ATATAATTTACATCTAGCCTTTAAATTTGTGGAAAATTGTTGCTAGTCAGTTAAGTAATTAGAGTTACCTGGTGTTATTAGCAATTCCACACATTACTGCAGTAAGTAGATTAGttgcattttacaaataagaCAGACCGCACAAGTTGTTAAATTTCTGTATCCCTCAAGTCACACAGAAGTTAATAAGAGATCCAAGATAAGTAATCAGGGACAAGAAAGGCAGCATGAATGAAGACAAAGAAAACTCCCTGAGGGTGATTTTAAATTGCTCCTGTTCCTTTCTGCACAAAAGAACACAGTCCAAATTGGTGTTTGGTCAGTGATACCAACCTGCCACAGAGGCTAGGACAAATGAGAGTTTTATCTGCTGACTTTGTTAATAGGTAAAAATGAATGCA-TCCCCAGCTGATTTATAGTCCATTGCAGCAGCAGCATCGCAAAGAGTAAT-ATACGGTCACCACATACTTTGGC----------ACTGTATTCAATAGTGCTTGAAATAAGTTGCA--ATTACCCTGGATGTGGAATTGTCTGTCATAACCAATAGCTTATTATTATGCTCCCTGGTGTTTGTGTTTATAATGATGCCTGAGAAGAAGACCTGTTGTCAATTGCGTTCATTTTATATTGGCATCCCATGTGACACTTCA-GAACAGAGATGATTAACATTGTTGGGGTGACACTGTAAGCAAAT-----TGATAAAACTGTTCAAAGAAGACTTTGTGTATAT

a score=58077
s chr3           158519452 5287 + 160039680 [encoded data, 5702 characters]
s HiC_scaffold_1 145897694 5021 + 233722169 [encoded data, 5702 characters]

a score=24512
s chr3           158532400 1989 + 160039680 aaGATGAGCATTCCTGGGCTTGGACCTGAGTTCTGCATCTTAAGATGCTGAGGAAACGTTATCTTACCCAACTAGAGAAGAATTTCC--TTGTTTGTAGGTTAGAA-------AGATAATTTTTTTTCTTTTCCATGATGTTTGGAAGCTA-AATATACACCAAGCATGT-TAAAAGCACACAGAATAAGTGTAGACATTAGCTATGATCATTATATCTACACCTTAGTTGTT-GGCAATTCTATCTCTAAGATGAAAGCTTAAAATTTCAGAATATTCTGTATACACAAAGGTTTGCTTTAGCCAAAGTCTT-AGTGGCTGAACACTAAGTATAACACTTAGTCCTGTGCTCAGAACAATCTTTGCCTGGTATCTGGATGGATAATTTGCAGTGGTATGTAGTGGGCAT----------------AATGCCTTAAAATTCAAAAGTCATGGGAATGTTCAAGTGTTTCTAAAAAGTCCACTCCTGAAGAAAATAACAGGAAACCGTTCTATTTTATATTTTTAAATTTCAACATATGCCAATGCCTTTGGGTTATAAGACAACCCCTTGGAATTTCTGTT------TTTATCCATTCCAGGTGACAGACATTCTTAGGTTCTTTGAAGCA----AATTCATATAATGATTTAATTTCCTATAACATTTTCACTAAACTGAAGCATCTGTTCAATTTCACAGACTGCAGAACAAACACACTGTATGTGTGTGCAGGGGGCAAGG----GTGGGGGAGCTGTGGAAGTGAAGGGA--------AAC----------AGCTGAGAAACCATGTCCAATGAAGAG------GGAAACAATGCAACATCTTTTGTTCCCTGTAGATTGGAT------AAAGAAATTGGAATTATATCTTACCACAGCACGTG---CAGTGTCTCTCATACAGGACACATGGCTCAATAA----TTCTTAAATAGGCATATACAACATAAAAGGTAAAAGAAAATGAAAGAGAAAATACAATTCTAGATGAGAATGGTGGGAGCCTTGGGAGACACTGCACAGACAGATTGATAGACACAATGTCTATTCTTTGCTCCATCAGATTCCTGTTGCTTCTAATTGGATGAAAAATGCAGAGGTgg--gcagagcatgcttctcagtcatagagtacttgcctagtacacacaaagccctgggtttgat---tcccatcaacacgtgagggtgtgtatacctgaaattctaaaacctggagatatggataagaatatcaagaattcaaggttatccttcatgatatagtaagttcatatccagtctgaactacaggagaccctgtctcaaaaCAGCAACAAAAGTGAAGAGCTAAGTACTCACTTGATCATGAATCCTGAATCACAGACCCAATTTCTGCTGAATTTCCAGCAGGATATacacacaccatacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagagagagagagagagagagagagCATATCTTGGTAATATAGTTTATGAAAAAC-GTGACACTCTAAG------CTGTCAGGACACTAAGGATCCCATTAATAGT--TCCCTTGGAGGAATCCATCATGGAAGCTCCTGCTTT-ATTGTGCTTT--CCATAGGGGCATTACTTAAGGCTCAGATGGCCTTGCTTCAGAGCCTGTGTGATTTATGCTTTCTGGGCAGCAAGATTTTTCCTCTTGACATCTATGAGGCAAATACTATTCTGAGAAACATCTTCTTATACACTGCCCCTTTTGATAAGGTGCCCACATAAGGTTTTCTTGGCAACCCTGGATGCTAAAGCAAGGTAATGGAAATATA----ATACTAAGTGGGGGCACTTAGGTGACA----------------------GACAATCTCAC--TGCTCAGGATTGCTACTGGGATTT-----CATGTTTATAAAGTTTTGAGGCAGAAAACAAGTTA------ACCA-----------------TCTCCTTTAAGAGTTTTCAGAAACACTAATAAGTACATTTACTTTC-CGTTTTA---------TTTAGAATTTA-CTTTCCTATTTCAATTAATTGTGACATGATTTAGTAAAGATTAAAATTGATTTTATATGTG
s HiC_scaffold_1 145907228 1851 + 233722169 AAAGTCATCATTTCCAGGTGTGAATCT-----CTGCCTCTTAAAACCTTGAGAAA--GTCA-CTAATCCAGATCAAGCattaattcacatttttcatgGGTGAAAATTTGAGAATATAAAAATCCTTTCTCCTACGGACACTGTGAAGCTCCAATACATACCAGGCATTTATTGAAGTACATTTGATAAATGAAAATACTATCTGTTTTCattaaatagaaaagtaaaatgtttaGCAATTATAT---TAAGATAAATTCATAAGTTTCCACACTGTCCTCTAAGTGCCAAAATACACGTTAGCCAAAATCTTCAGAGACAGAAAACTA--TCACAAATTTAGCCCTGCATTCCAAGCAGTCTTTGCCCTGGATCTAGATAGGAAATTTACAGTGGTGTTTGGCGAGCATTAGCTACTTATGATATAATGACTTAAAACTCAAAAGTTATGAAAATGTTCCAGTGTTTCCAAAA-GTCagctttttttgagaaaaaaaaaatacttgctcacccttttctcatttcttctgagATAAACTAATCTCTTTGAATTACGATAAAATCTC--AgaactttttttcattctttgattccTTTCGGGAAAT------------GTTCTTTGAATAAGTAGATTTTATGcaatgatttaatttcatttaaagctTCCGCTAAATTGAAACATCTCCT---TTTCATAGCCTGAAGAG-----ACCCAGGATGCGGCTGC--GGTTCAATGTGGCGTGGGGTGGC-GTGGAAAAGGAGGGATGAGAAATAACCAGAGGGGTGAGGTGACCAGACAGCTCCTCAGAGGAGCCAAAAGGGGACCATGTAGCTGCCTTTATTCCCCGTACAATGCAGGTGAGGAGAGAAA---GACTTGGGTCCATCCCCAGAACCTGTCACAGCAACTTTCACCTAGGGCATGTGATAAGGAAACACATTTTTGAATAAGCATTTACAAGATAAataggggga-aaaataaaagtggaagtACAG------------AAGGGGGAAG---------------------------------------------TCTTTGTATCACCGAGTT------------------ATG------GCAGTTATGGCTGTAAAGCA-----------------------GCCTA-------CAGAGAC-TGCATTTGATGGATCTGATAAACTTGCTAGGGCtttattaacagaagt-----------gaaaaatgtGCA-----------------------TCCCTTTTTCCAt--ttgattcctgttta----------------------ttttaattgaacGATGAAACAGAGAGGTAAAGTATTCATCTAATAGTCGATTCTGAACCACAGATTTGATTTCTGGTAAATTTCCAG--------------------------------------------------------------------------------------GTAATGTGAAGaagcaaaatatttatcttgGTGATACGAGTTATGAAAAACTGTGGAATCACAGGGAATCACAGTCCAAATACTAAGGATCAGATTTACAGACATCCATAAAGTAAATCTATCATGGAAGCTACTGTTTTTATTGTGCTTTATCCATAGGGAGATTACTGAAGAATCCCACAGGTTTGCTTCAAAGCAGGTATATTTTATACTTGCTGGGCAGAGAAGTTTTTCCTCTTGACATCTATGAAGAAACCACTTTTCTGCCAAATAGCTTCTTATTCCCTACCTCTTTC-ATGAGGTGCCAACATAAGATCTTCTTAGAAACCTTCGACACTGATGTGCAGGCACAGGACTAAATTGTATACAAACCGGAAGTTCTTCAGCAGTAACTGAACATTCCTTCTTCATGTGGCAGTGTCACTGTGTTCGGTTTTGCCTGTCTGCTTTGGAGAAATCTTTGGAAAGTGTCATAGGATAAGATGAATGAGGTTTTATCACTCGCTGGGCATATTATTCTCCCGATACATAATTCACAATCAATAATTAATAATTGTACCCCCTTATTTTAACAGGATTTTTTAGAACTGATTTTTCCTATTTCAATTAACTATG--ATCATTTcctgaaaattaaatttgaatgtaTGGATG

a score=11175
s chr3           158535686 670 + 160039680 TCATTGTTAATATTATTAGAATTGCTGATTTGAGTTACTAACTGCCACACTTAAGTTCTTTGTAGGAACATGATGCAAGAGCATGAAACAGTGAGCTTTAAATTCTACAAAAAATCTCTACCATGCACT-AATAATTTTTGATTAGTCTATATTATTATGT--CTAATATTGATACATTTATCAGAAAGTCACTCTTACTGAAGTTTGGAGAGGAAGAAACTTG------ATCTGCCTTTTATTTAAAGCCTAGTTAGAGACACAGA------ATAATCAAATTTGTTATAGATATTTTT-ATGTATTTTAGAATATAATAAATAAT--GTTTAAGGAAGCTAGAATTTTAA-----TAACAGATAATGATACTAATTTATCATAATCAGATAAT-GTTGCTCCCAGTGTTATAGTTCATGGATGAAAGTCTTCCATATAGTTCTTCT-TATAATCT--ATGTACCTTATAATGTTGAGGCTGGTAGATTTCATTACCGAGGAAGACAATGAACACAGATAAAAACAAAGAAATAATTACTCAGGCTTAAGTATTAATAAAAGGACTTTACAGGCTTTATTTGATACAGA--TTGAAAATCAAATTCTTCCTGAGAGGGGATTTCTTCTTGGATTTTTAAAAGCTGCATATTAAGTATCAAACTAGGAGAAATGGACACAAATTCTTACT----GCTACAAAA
s HiC_scaffold_1 145909688 671 + 233722169 TTACTGTCAACATGATTAGACTT------TTCTGACGCTGGTTAGTTCTTTTAAGGTCTTTGGAAGAATGCaacacaaaaatatgaaagagtAGGAATCTAACTCTA--ATGAGCACATACTAGGTATTTGGTAACTTTT--------TCCATTATCATATTACTATTCACAATAACTTCATAAAATAGATATTATTATCCTAGTTTATAGATGAGGACCCTTAGCACAAATCTCATCTTCAGTTACAATCTAGTTAGGGAACCAGCcaacacaaaaccaaaattgttatcaatctttttgaaaaacaatgaaGTATGGTAGCTGGTTGacttaaagaaaatgtagtttttaaattttaagtgattGTGATA--ACTACATTAAGAGCAGATATTTGTGGCT-----------AATTCACAGATAATATTCTTTGCTGTATTTCCTCTCTGTACTCTTCCTGCCCCTTAAAAATGTGGTGTTGGTGGCCTTCACTGCAGAGCAAGAAAATGAAGATAGCCAAGAACAAAGAACTCATTGCTCAGTCTT--GCATTTCAAAATAGTGTATAAAGTCCTGATCCAACACAAAAGCTGTAAAGCCAACACTTGCTGGGGAGAGCTTTA-CCTTAGAACTGTAAAAGCTAAGCAGTAAGTATCCAGCCAGGAGAAATGGTTGCCCATTATGACTATCAGCCACAGAA

a score=17886
s chr3           158543154 668 + 160039680 AAGATTAATTGGTCAAATGGGCAAGGGGAATGAAGTCAGACTGATTGAATACAATCATCTTCAGTTTTTTGTTTATGGGTACACTAAGAGAGGG---------AAAGACCAATCTCTTAAATGTGTCAGTATTTTAA-----------TCTACATGGATTTAATTTTA--AGTTTGAATTATCCTTTAACATGACTAACATGACTGGAAACAGTAAGGC----CAAGTGTCAGACAAACTCTTTGCCCCTCCACTGTATAAATGGTAAATCTAGTCCAAAGTAAGCTTCTTCTGTCATAGATTTATGTGAAACTCTGTGTCCTTCCATTTCTAGAGTAA--TTTTGTAAGCAAAG-CTTTTAGGAGTTGATATTAATCTATGGCATAAAGGAACCAAAGACATTATCTTGTAAGATGTTTAAGATGAACAATGGGAGAGTGTGCTAATTAAAACTCTTAGAAGGCTATGTTTCCTGGTAATAGTTC--ATGCAGTTCTTTCTGCACTCTCTGGTAGATGGCCGTGTCATTCTGATAAGGTCAGTGGCCCTCATTTAACTGGCTGCAAATGTTTTATCACATCTTGTACTTCCAAGAAATGTTTACTGTTCTGGTTCACAACTTATTCTTGACATCTACAAGCTGTTCGAAAGCTTTTCCTTTTGTGACTGTGGTACAAATGAAT------ATCACATGTTATTTA
s HiC_scaffold_1 145913576 644 + 233722169 AAGATCAACCTGACTCATGGGTAAAGGAGACGA---CAGAAGGACCAAAGGCAGTAATCCT---GTTCTTACAGGCAGGGATGGAGGGagatgagaattaaaaaaaaaaaaatctattaaataaagcaatgagttaaattgaaaataatttaaattaattttatttgagaatTTTGATTTATCTC---------CTAATATAATCAGAGATAGGGAGGCTGGCCAAGAGTCAGACCCACTCTTATTACTTCCTCTCCTTAA----CAACCATGGATCCAAACAGACA-------------------GCAAAACT--------TACCATTTTAAGAATCCCTTTTTGGAAGCTAAGACTTTTAGTAGTTGGTATTCATCTGTGGTAGAAAGGAAGCAAAGGGATTATCTTATAA-ATGTTTAAGATAAACAACGGAACAGCTTGCTAATTAAAAAATCTTGA--GATTTATTTCTTAGTAATagtttttatgtagttttttcTGAACTCT---GTGGCTGTCTGTGTCATTCTGACAAGGTCAG-----CTCCTTTAACCAGCTTCAAGGGTTTTATCACACATTATATTTCCAAGAAATGTTTACTCTCCTGGCCCACTATGTATTCTTGACATCTTTGGGCTCTTCCGAAGCTT----TTTTGTGTTTATGGTGCCAATCAATATTAGCATCACAGGTTACTCA

a score=49024
s chr3           158552875 2864 + 160039680 TAATCTGCCTTA--AACATCACTGTGAGATGGGATT-TATAGGTTTAATTTCCTTAAC----ACTTTTGTTTGCAAATGTTTCTGTGCTTCACTGACCATAAGGTAAGTACATATCTTAAGAGGCTTACATCTAAGTGTC-----AGACCTGCTAGAACTGTCAGCATGTTTTGTT----TGTGGAATAACAGGGTCTTTCCCTTGGTTTCCCTATCACCAAAG----CTATAGAATGT------ATAGTTATCAC-TTAGAAAGCACAT--------------GGGTCATT------TGCTTACAATTTGTCGTGTGACAGAACAAATAAGACATAACAGACACTAAACACATTGAGAAGGGGAAATTTGTTATCTCTAAGG--------TAATATAACCTGTAACTTGAGTTTTACCAG--------------ATAGAAGAAAAATTTGGGGTGTTGGAGTTGAGAAAACTAATAAGAAAAT-----------------CACAGAAGGGTGTGTAAAAC--ACAGAAAATGATGTGTTGTACAAACTCCAATTGTAAT-GCATTTATCTTACCaaattataattatttcataatcaatatttaagataacattttatatgaagctataatattttaaataatt-ttGTTTTGTGT-AAGAAAACTTACCAACTGGCCACTAACGAAATCAACAAATTTAGAAAAGAATTTATTTATGCAGACTGAATTGCATATCTCTC-ATCATCCAATATTCATGTTGCTGGAATTATTATAAAACAAATCAATAGCCTAAGAGAAAATTTTAGTTTCCATTAAGATAG---ACTCTATC-ACATTTAGAATACTTCAATAT-AGTAAAAATTAATTCTGTGtttattattattattaattcttaaataaaGGCATCTTT--AAAAATGGAATACTTAATAAATGCTACATTTATGATATTAAAGTGT-TTTATATAATTAAAATCAAAGAGAAAATATAAGGTAATTGTTGAAAAACCTTAAACCAAATATAATCTTAGTGAAAAATTTAGTCCAAAACCCAAATGAAAAATAAGTGTG-------TGGTGCTAAGGGCTCAGTTGACCGTATCTATTGGATTAAGTA-----------------CTTGTGCA-TGTGCTATGGTAT---AAATGCTACAACACTTCTGTATgtgtagttttgtgggcaaaggttggacactatgagctggtctcaagaatttgctcccacttacagctctttgatctagaacaaagaagcaaatttctctgtgcctcaacttcctttcttatatagtgcaa-cctctggaattttgtccagctctgatgttttaagaagcaatgaAAAAGTAGATTCTTCTGTCACACGTGTTGA------GAAACAGAGCGTCACACCATGTGTGCATATACACCCTGTACATATTGTTCCGCACT-CAGTATTATCCC-AGGAGATCTCTGATGTTTAACACTCACTCAACATTTATATAGGTATTTATAACTTAATCACCATAGCCTTTATAATTGTCTTACAAAATTAATTGCACTTGAAATGGAGAAGAAAAAAAATTATGTCATGAAGTACACCTTCTCTGTATAACACTGAGTGGCACATCAT--ATGTGGTGAAA-------------GTGGTTCCAGGTACCTTTCCATCCTCTGTGACTCTGAGAGGTGCCTATTATGGTGAATACAGACCACTGAGCATTTACTACTCAAGAAATCTAATTATCTACACATTTTAATTATTTTAGTCACACCATCTGTGTCACAGCATATCTTAGTATTCAGCTGGCATAGCTCAGCTTTCTGTCCATTATTCACCATCTTAATACACT-GATGTCTTCATAGCACACAG----TGTCTCAGC----TTCA-CTCTGGTTTCA--TTCTATTATCCCATAGCCTGGTTATGCAGTC----TTCTAAAAGATATTTTGCCTCCTCACAAAGGTATTTTTTCCTCTTTC-AAATACGGTAG----------------------TTTTCTCAACAAATTAATTCAAA----CTTTTCCAGATGTTGGCTCCCCAATTTTCTATGCTATTTCTGATTTCCTGTTGTTTATA-------ATGCTTCGTTCTTTTTTCTTCCTAGGAATATTTGATGGTGAAGTGTTAATGCATAACAGTAGCAAAACAGTT--TCTTTTTCAGGTCAGCTATTCTCTCTCTCTCTCCTCATAGAAAC-ACATTTTTTTTGTTGTTGTTGTTCCTACTTTACCCCTGAAATTCCACAAAGTGTAATTC-----------------TGCCCTTATATGAACACAGTACATGTGTGAAAGCATGTG-------------TGTTTCTAGCCTAATATG---------------------------------------TTTGTTATAGGCATGACCTTCAGCACACTATAACTCTCCAA--------------------------------------------TAATTTAAGATA-ATTTTCAACTAACCTGAACTTGGTGTAAA---------------------------------------------------------------------------ACAAAGATAATCAGGGCAACTGGAGAAA----------------------------------------TGATATCTTTTGAAAGTCAGTCAGTATAAACAGTGACTC-----CATTGTTAAAGTGTTTAAATAGATTATGTTGATGCTAATATAAGCTTTGATG--TCATCCCTGATCACTGCTATTAATGTATCATGTTTCATGTGTATTAAAATGACAACTGATGTG-----GAGATTTTATTAAAGCAATGAACAAT-CAATGAAACGGAGTGAACATGAGAAACCCCCGGAGATGCATTTACTTAATACATATTCCATGTGTCTTTGAGTGACAAATGATAAACTTTCTCTTTTGATTAATAATGTAAGTAGCCTATCTGACACTTCCAAAGAGG-TTATTGATCAAATCTACCATCATGGTTTAAGAATAGGTGACAGATATTGACCC--TGCATGATTTGCTG-AAATTTTCTTAATTCATTTTAGTGTAACAGATTCTAACAGGAGATAAAACACTTCTTCCATGAGTTAATTATTCCTAGAATACAAACAAGAGTATCTCTTATACTCACGTTAAGGTAGTCACAAAAGTAATA---TATGTTGTTGCCAAATATGTAGCTGGTTTTTGAAAATCTGGATCAGAAT---ATACTTCTTTATAAATCAAGAAAATAT
s HiC_scaffold_1 145921025 3162 + 233722169 TAATCTGCCTTTTTAAGATTATT---ACATGGGACTCTGAAGGTACAGCTTGCTTAATCAATACTTTTGTTTGTCAAC-TTTTTATATTT----GTCtacaatgtaaatatatattttaggaaaTTTATACCATCATTTTGAAAAAGTTCTATAATAGCTTTTAGTATATTTGGTCAATATATTGAAAAACA---TCTTTCCCTAAATTTCCCAGAAATTTAAAGCCTCTGGAAAACGTGGATTGATAattttagcattaaaaaaaacattaagtgaaACATTTGAGACATTAATACATATTTCAAGTATGTCTTATGACAGAAAAAGTAAGTTATAGTAGATCTTAAGTATTTTAAA-----GGAGTTTGTTATTTCAAAGAACCCTTCATAATGTGACCT----TCTGAGCTTTCTTAGCATATTTACCACTTGCAGAAAACAAATGAGATATTTGAGGGCAGAAAAAGCTAGCAAGCAAACAAATATAAAGAAGGACCCACAGAAGGATGAGAACCACCCACAGGGAGGGTTCTGTTTCCCAAACTCCACCTGTTatcatattttgtctttcttactAGAATGCCCTCCTAA---------AGGGTTAC----------------TATCACTTTAAatcattcttgttttttgttaGGAAAACTCATTGATTGGGCTTTCATAATACTAgcacttttagaagaaaattcaTTTACTTAACATGAACTGAACATTTTTCCATCATCCAATTTTCTTTTAGCTGGAATTATCATAAAG-GAATCAATAATTGAATAGAACTTTTTAACTCTCATTAAGAGAGGACACAGTATCCAAATTTAGAATACTTCgatattaatgaaaattaattCTATATTT----------------CTTAAAGGaaggcatctttttaaaaatagaatgtttaATGGATGTTaaatttattgcactatggtctgccTAGACAGTCAAA-TCAAAGTAGAAAGATAAGGCAATTGTCCAAAAAACTTAAGCCAAATAGAAAGTCAGGGAAAAATTCAGGCCAAAagtcaaatgaaaaagaaatgtgttttggATGGTGTCATGCTGTTGGCTGCTGACACTAATTAGATCTAGTAGGTTAGAGTCccttttcctctttcactttgCTCAGGTAGATAAAGGGTTCTAATACTTCCAAGGGTGCTGCTTACTGCTTCAGG--TGGACAGCA-GATGTGGTTCC---AATGTTTTTCCA-TGATGGCCCTATGACCTGAGACAAGGAAGCAGATTTAGCTGGGCCTCAGCAATCTGTCTGATAAAGTGAAGCCCTTTTTAGTTCCTTCCAGCTCTGAATTGTCACAAACTCGAGACACAGTAAGAT-TACAGCCAGGTGTGTTGGTGTGGTGAAATACAA-GCCATTTCAGCTGTGTATGTGTGGTGTACACCCAAAGTTCAATAATCCAGTATTACCCCAAGGACATCACTAATATTTAACATTCATTTGAAGTTTAACTAGCTACT--GGGTTTAATTACAATcacttttataattgttttaagaaattaatCACACTTG---TAGAGACGAGAATTCACCATGGCCTAAATTACACTGATCCACAATAACACTGGACAGTAAATACTGAATGGAATAAAATTGCTCAAAATACGTGGCCTAAGGTACATTTTCATTCTGCAGGACTCTGTAAAGTGCCTAC--------ACACAGAACACTCTATGGACAATACTACAGAAGT----TCATTTGCACTTTTACACTATTTTAGTTACATCATCTATATTATATTAATTCTTTAAGTGCAGCTGGTATAATTTAGC--------------TCACCTTTTCAGTACAAGAAATGTCTTCATTACACTTAGGCACTATCTCAACAATGTTCATTTCTTGCTTTATCTTCTCATACCCCACAGCTTAATAATGCAGCCAGGATTCTGCAAAATATTTTGCTACTATACAAAGCTAT------CTCTTTCAAAATATGATAATAGCATGAACatccaaaattattttccttaacgATTAAGTCCAACAGCTCCTTTCTAACTGTCTGCCCAC--ATTTTCTCTGTTAgctctgttttactgttttttttaccCTAgtatcatatttttctctttctgcctaTGAA-ATCTCATAAAGAAGCGATAGCAC-TTACACTATCAGTTTGTTTGATTCTTTTCAGATCAGCTA-------TCTCTTCTGTAACAGAAATGATAGCTTCTGGCTTGTTCTCA-TAATATTTCATGACTTCAATTCcacataatttctttcctttgactgagcacaaatacacacatatacacacagttc-tgttcaactacacACACTCATTATGCTACTATTTTGGGCCCAATGTAACTATctcctggttttctttcttttttcttttttcctttttggtagcagggatcaaactcaggaccttat-gcttaccaagcaggtgattgtgccactgagctaaacatgCAGCCCCTATCTCCTGCTTTTAAATATGCTTTCAACCTTACTGAAAGtgaaatacaggggctggggatttagctcagtggcataagcgcctgccttgcaagcaggcagtcgtgagttcgatccctgtacccataaaaaggaaaaagacaaaaagaaaaaaaaaaaaaaagaaagaaagtgaaatataGCAAAACTACCCTGGTGCCTCTGAagaaatagtcttca-aaaaactGATGCAATAgcattgttaaaatatttaaacagatcatgtcaatgaaaatataaattttaatacttcATCTTTGGTAACCACTATTCAagtataa---------taaagtaaaataatacctTATATATTTTCAGTACTTTGTCAAAGCAATAATCAATGCCATGAAAATGAGTGTATACAGAAAGTCCT---AAATGTACTTATC-------GATTCCGTATGTCTTTGAGTGACAAATGAT---TTGTCTATTATGATTAATAATTTAAATAGCCTATGTGATACTTCTCAAGGGACTTATTTATCAACTACATCATCATAGTTTCAAACTAGGTGACAGCTACAAGTTCAAAACCTACTTCACTGAAAACGTCCGGAATGTATTTTTGTATGACAGGTTCTAATAAG------AATGTTTCTGTCATGAATTAATCATGCTATGGAAAAAAGGAACAGTGTTTCTTATATTAA----AGGACGGTCACGGAAGTAGCATGGTGCATTGCTGTC--ACATGTAGATCA-TTTTGAAAGGCAAGATAAAACCTTaattcttatttataaattagGAAGCTGT

a score=75647
s chr3           158557281 3973 + 160039680 [encoded data, 4524 characters]
s HiC_scaffold_1 145924887 4300 + 233722169 [encoded data, 4524 characters]

a score=27728
s chr3           158562267 2118 + 160039680 AGTTC-AGTGACGCTGCGCGTGGCTCC-GCAGGCTGCCGCTCCTGCTACCTCAGCAAAGAGACCGCCAGGAGTGCCTCCTCGGGGTTTCCT-CCCTGCCTGCGTTGCAGGCTGCAGGTTGCAGGCTGCCCAAGGAAAAGGTCTGCTTCTGAGTCCAGTGGCTT-AT-TCAGTACTACCATAGAGAGTC-AATGGCAGCTTTCAAGACCCCTTTCCATTTT--GGTCTGAGATTGCTGTTCAGGGGATGTACAAAAAATGAGAAGTGTTTCCCAACTTCCTTTCATTTATTCACAATCCTGCTCCTTCTGCCCCGAACTCAGGAACATTCGCTCCTCCACACATATTCACCGGAAAGCACACACAGAAA-------------AATACAGACATGTACA------------------------AAAAGCT---------------TTAAAAAGCATAGTGATGAGACTAGTGCTATATTTAGACCCCCTGCTTTCTAGACGAAACCGAATTCCTTCT-----------------------ATCCCGGGAT---TCTTCTGTGATTTAGAAGTGAT--------------------AGGGCTAGGGGCCTCCCCCTTTTCTCTCCAATGCCAGTGGACTGTGACATTCAGATGCTACTTGGAGTTGGGTGAACTCCCAAAAGTGCTGGCATGTATCTTATAT--CTGGAATACGA----AAAGTCTTCAAGGTTAAACATCGAACCCTGCCCCCACCCCAGGCTGCCAGGAATTGTCTAGGAAGAGA--TTGGAGACTGAGACTTCATCTATAGATAGTCATGGAAGAGGATTAC----TGCTTTATCTGGAAAAGGTGAAAAGGTTGGTGGCCTCTTAAGGAGACT--TCCCTTAATTTACACAAAGAAGAGGAAAGGAG--TGCATTTTGGAAAACCACATTTTTAAGAAAAAAAGCATTGTGAAACAGTGTAAAACTTCTTCTGAAAGTGGCAAAGAAATGACAAAATTTGTTGAAAGGACACTTTTTTAAACCTAACTTTTGTTGAACTCTTCCCCCCCCCCCCCCGCAGATTTGTTCTG-TGAACATCT--CACTGTAAGTTAC----------AATATCTCAGCTGGAGGAGATGCTGTGAAAAAAATTAGATAGGAATTGAAAATCTATTAAAA-TAGCTCATCACGGCTTATGCCCCATTACAGAAATCCTTTGCAAGGTTCCAGTTCTTTTCAGTACTGCTTACAATGTTCTTTCTCACAGTCTTTCACTTC------TTTCCTAAAGCTGTATGTTGGGCCCACCCTTATGAAAAAGACAGAAAAAGCTCCTCTGAGCTTAGAACTG------TCTGCATTAGAACTCAGAACTTCTT--ACTCTAACTTGATGATCCACTCTCC---TATCAAAACATTTCAAA---TTCTATCC--AGCGTCACAGTTGGCTACAAGTAACTTCTGGCCTTCATAAACGA--AA---------------AGATGCCCTCCCATTAGGTAGGAGAAATTGTTTTTCTTTCCAATGGGAGAAAACTTTTGAAACC------GAAAACTAAAATTCAGTGCCACCACAATATCATATTTTAAACCACATGCCTTCT-TTCTCCTTTTTCTTTAGATTATAATCTC-ACTTTGGGCCATAAATATCCAGACA----AAAGGCATTTTGTGGTGGAATGTGAATACAGCACTAGAAGTGACAGTGAAGAAG-------------TTTTGGCTACAAGGCCCAGGACACCTCCCCCACCCCCAACTATTA----TTTATGAACCTTGAAGGAAACTTGGCAACCTTCAGTATTTATACAATGAAGTGTATTGATGATGTCAGTGGTTTCACAGAATTATAGAACTACTGAAATGCAAATGT-TCTTTTGTCTTTAAACTCCAACTTTTCCTGTCTCCAACACT--------------ACT-TCTAACTATATGTAGATGATACTCAGAAAACTTCATGCAGATGCTTGACATCTAAAAAT---------------TCACAATTTACAAAGTTAGACCAGAGAGTTTTAA--GACTAGCTATTCAATATGCATCTACATATGGTTAGATATTAA-GCTATAAAATTTTATGAGGTGCTAATCAAGTTCTTTGACTCATACTATTAAAATCATTGAAATGATAATCTATTCTTAGGATGAGCAGGTCTAAACCTTACTTGAAAAT-AAAAGGCATGATGATATTAAATTGTTAGGTGCCAAAAACTTTGTGTATAATTCTTTCTTGATGTCTGCAATATTTACCAAGATATTCTCTTTGA-----GGGATTCTTGATTAAGGTAAAACTAC
s HiC_scaffold_1 145930202 2221 + 233722169 AGTTCTGGTTACACTGTGGGAGATTTCTGCTGCCTGGAGCCTCTGAGGGCTCCGCAAAGTG-CGGCCGAGAACCCTCCCTTTGGTTTTCATATCCCGACTGTCTGGAAAATACAACGTTTATCGCTCCCGATGAGAAAACTATATGTGTTGCGCCGCTAGCTTCATGTCAGT--CAAGGCGGAGACCCTGGTGCCGGCTCGCGCGTCCCCTTCTTATTTCCAGAGCCAAGATTGCTGCTCTAGGGGTgagcagagacaga-aggggtttcCCAACTTCCCTTCATGCAGTCACCGCCCCGC--CTCCAGCCCAAAACCCGGGGACGCGCGC--------GTGCACCCGCGAGAGCGCGCGCACACACATTCACACTCTTCTGATAAAGGCATGCACGCTTACTTTGTACATACTTTCCTTTAAACTCTCAGAGCAGCAATATGTTGAAACCCACATCGATGACGCTTGTGCTATATTTAGACTTGCAGGTCT---------GATGAATTccatctcttaaaattaaaatgggcTTATGATCATGGAATCATTCTTTTGTGGACTGTAGGTaatctcctctttctccttttttcaagAGAAGGAATCTTCCCTTTTATCCTTAATTGCTTATG--------CAGTCAGATAGTGTGTGAAATGTATTGAAGCCC----------------TTTCTTGTATTCCTGGATTGGAACATTAACGTCTTCGAGAATAAAAATCA----------TTTCTCCTGGTTGCTGGGAAGTGGCTAGGAAGaaactttggaggctgagacctCACCTGTAGAGACCCCAGGAA-AGGCTGACGGTGTGCTTTATCTGGACCAGG----AAGGTGGGCCCACTTTGAAAGACAACAGCTCACTATTATACACACAGTAAAAGAAGTGAGAATATATTTAAAGAAGCCACATTATCT-TCATTAAAGTCTTACAAAACACCATGAAACAGGTTACGAACATggcaatgaaatggaaaacaatattaaaaga------ttttaaaacgaACTTT-GCTGAGCTCTTTTTTCTTACCTCC-ACGATTCTGTCTTGCTAAATATCTTGCACTGCACGATATTTAGTGATTTAGTGTCTCAGCTGGGTGGGGTGATATTAAAAATTTCACACGTGAATTGAAG-cctattaaaaataattggaCACAGCCCTTTTCCAGTTAAAGCAAACCTACATGGGTTTCCGGTTGTTTGGAATACAATTCACACcccattttcacatatttttttaacttaatccACTTCCTGTACCTGTCCTGTGGAACCACACTTCT-CAGGAGGCATGTAGTGCTCACCTCAAAAAGGTACTCAGTTTCCTTGCCCTTGAACTCAGAATTTCTTTTAGCATAACTCCAGAA--CATTTTCCCTGTACCAAAATGTTTCACAGGCTTCTTCCCTCACAATCGCAGCCGGTTATGA-TAAGTGCAGATCTTTGCAAATGGTCAACGTATCTCCTGCTCTAGCGACCTTTTTATGTGGTTAGTGGAAttatttttc---caagaaaaagCAACCTTTTTTTTCCATTGAGGAGAAAGAAAGTTTTGGG----------GTC----------CCATATGTCCTCTATTCTCCTTTGTCCT-ATTTTACaatcttgattttagtttataaaGATTCAAACAGAGAAAAGATGTTCACCATGAAAACATAAACTTAGTACTAAAGAAAAGAGTGAGAGAGAACATTCACTAGACTTTGCATACAATGACTTGATTCTTTC-----------ACTGTAAGAATCTTCTGAATCTTGAAGAAAATTTGGCCATCTTCACTGTCCCAGCAATGA--------------------GGCTTCATGGAATTATGAAACTATTGAAATGCAAATGTAGGTGCTGTCTGTAAACCTCA--CTGCTCTGCCATCAGCCGTCAGGAAAGCAGGTGACTGTCTGACACCCAGAGAAAGATAAACGCTAAATATCATTTGCATGTTGTTCAGCCACAAGTCCAACGCAAAAACCATCATAATTTAAAAGAGTAGATACAAGTAGTTTAACGGCCTAGCTTTTCACGCCATGTCTGTAAATGGTTAGATGTTAAAGCTATAAAACTTTGCAAGTTCTTAATCAAGTTCTTTGATTCGCTCCACTAAA-TCTTTGAAATTGCAATCTCTTCTTAAGATATGTAGGAAC-AACCTTATTCGAAAATAAAAAGACCCAGTGATATTAAACAATCAGGTGCCAACTATTTTCCTGCTACTTTTCTTTGGATGATTGAAATGCCATCC------TTGTCTTAAACTCTGGTAATTCTTGACTAAAATAAGACTAC

a score=6758
s chr3           158583251 831 + 160039680 GTGTTGCTTTGAGGTGTTTTGATAGCCAGATGTGGTTTTCACACCTCTGATTTTTCAATTCTCCCACTGCTGCTTATCTGGCACT-GACATTTTGAGTTATGCTGACCGATTCCCTTTGTGTGA---TTCCTCCTAGCCAACTTTTCTCCAGCTTCTGCATTTCTTTTCTGACATCTTAACAAGGAAGCATCACAAAGCCTTCATTTAAAGACATTTTG-TATGACCATATTGCTCTAAAATACTGGA--AAAAGTAGTGTATCAGACATGGTCTTAAAGTAATGACGT-------------CATTAGTTC------TCAGAGTTAAATTAGTGTTCAAATTGTTGATAAAATTGGTTCCTCTATTCTGCAAGGTC-TTGCAGTCACAAGCTCCATCTTTCCAAGTGTGGG--CAGCATGCATCTCTTTAATCTCTGCTTACTT---ACACTTGTTACATTGACACAAATCAACAACTTATTAGTAGTGCATGGGGTCAATAGAGTTATAAATTAATTCACTGCCATCCTCAGAGAAAATGGAGTGAACTCGGA-AGCTTGCTGCTCACATTGGGGTGACTATAAATGAACTTGCTGGTCTCC----TGGTTTCAGTGAGGATTCTAGG---ATAAAGGGAGAACAGGCTTTAAGTCATGAAGTATCTATCTTTGTGAGGCTGAAGTCTGTGAAGGAGGTGACACCAGGACAGCAACTAAAATG------------------------CCACTATAAAACCACCAGGGTGTCAGTGTTTCTGTTGTGACAATGTCAGGAAGATGTCCAGGTTCAGAAACAAGGCAAACTCAGAGA------CATACAAGTCATATGCAGGAGAGTTAAGGTAAACTTTTCTCCCTTTTTATGCTAAATCAT
s HiC_scaffold_1 145946861 848 + 233722169 gtgttgttttaatttgtatttct-----------tttttcatgcaCATGTGACTTAAATTCTCCAACTTCCAGTCCAGGAGCTCTTGACAACATAAATATCTCTAATTG---CTCTTTGCATAGACTTTGCTCCTTCCAAATTTTTCCTCAGCTTTTTTATTCCCTGCCTGACTTCTTATCAGGAAAAGACTACAGAGCTTTGATTTCAAGCAATTTAATTACAGTGAAATTTGTtcaaaatcctgaaagaaaaataatctctgaAAAGTGACATGAATGAGCTGTTGTCCATGCAAGATAGCATTGGTACAAcagttaaaaatagaattagagTTTTCATTG---------TAGGTGCCACTGTCTCGCTAGGTCTTTGCTATAACAAGCATCACATCTCTGTTGACTGGCACATAATGTGATCACTCCATCTGTGCTCAATGGAAACATTTGTTACAGTAATATAAATCAACTACCGATGAGCAGAGAATGACAC--ATAGGATTATGAATCCATTTATG--TATCATCAATAAAAACTGCCTGGTCTCTAATAATCAGGTCTGTGTACTGGAGAGA-TAT-GATGAACTATCAGTTTCTCATTATGGTTTCA-TACATGTTCTGGGCTTCTATATTGACATCAAGCTATACTT-------TACCTGCTCTTCTGAA----------ATGATGGAGACCACAGTATAACAGCAAGTAGGATGAAGATGTATCTGATTACAAAACTCCCATTATAAGTTTACAAAAGTTGAAAAGGTGCTTTCTCAATGTGGCAAAGAAGATG-CCATtgttaaaacaaagaaagactcACAGAAGAGATTAttcaa---ataaacaagaaaatgaaa--aagacttccttctttcctctggtAAGTTGT

a score=22806
s chr3           158607446 1211 + 160039680 CCTTTAGCTCTGAAAAATCTTTTCTTGATTA-TTATGTGATAATGTATTCCTAATGTTTCTTCTATTGTTCTCAGAACTTCTATTATTCAGTCACATG------AACTTTATGCAGTGTGTTTAATTTTGCATCTTTTCCTTCCTTTTTTTGATACCGTCGTTCTTTTAATTTCCTTCCAGATGATGTTATTTTCTACTACTTTCATCTTTTGTTTGGAATATTCTTATTTTAGTTGTTAGT-----TTTTAGTGTTTA----CTTTTGGTCTGATGGATATAGTTTCATAATATTAGCCTTTAATGAT-TAAATGTTATCTTT-----CTTAGGCATTTAAA-------------------TTAAATTCTTCTTTTAACATATGTTTGCCTGGGGAAGTTGCAAGTTAGGA--AGTTTT--ACTG--TGATAGTTCCTTGGATGTTACAATTAAATTTCAAAGCTCCTATTCCCA-AAACAAATGAGACTTACCAGATTATTAAAATGTGTGCATCCTTCATTTAGttattattattaaattataagacaatttatattatatGTAGTGTAATTAGAATAAAGTACATGTTATTTATTTTAT-TTAAAAGCTAGGAAGCACTTTTTC--ATTTG-TCTATATTTAGTCTTTGATAGTTGGTTGTGCTTTCTGATCACAACAA----CATGGT---AATAAGTTGAGACTGACATTTAAATTTATTCC-ATTGTTCAGTCTAAGATAATTAACACTTATAGAAGA---------------------GTGTTTGTGAAGAATTATTTACATGACTATTTTTTGAAATTGTAAATATTGTGAAAAATATTTGATTGTTGTAA---------------TGCTGTTAGGAGTTTTACCATCACAAAGCATATGCATTTCCCCTTGGAGGAGAGATTAGTGAGTCTTTACTGTTTGCTGCAGTG------------------GTTGCTGCCAAGGTCCCAGCAGATGCTGTAGCTATTATA--GTATTCATGGCATGGACAGCTACA-TTCTGACAGGGGCATTTCTAGATGTGCTCAGTCAACTTCTGGCCTTTTCGGGGAACATAAATATAGATTGCCTTATATAATATGCATGTCCATCAATTTGAAA---TAGAAGACCCTTCTAAATGGTAAT--AAAGATTTCTCCATGAAGGTGATGAGGAACAAGGCAATAAAAATTTCATTCAGTACAGTTTGGAATCTGAGAGGTAACCTAAAAAGTGTTTGTTGTTAGGTATG------TTAATTAATTAAAAGATATTATGCTATAGTCTATTTGCTTAACAGCATTCCACA
s HiC_scaffold_1 145976413 1280 + 233722169 CTCTTAGGTTtggaacattttttctttattagttcTTGGATAATCTGTCT------TTTCCTCTGTTATTGCCAGAACTGCTGATCTTCAGATACAGATCCCCCGACATCCTTCAGT--------TTTCtcacattttccta----tttttgctATCTCTGTCTTTTTAGTAGACCCCTAGGCAATGTTATTTTCCAACAATGTTGGTTGTTTTT--GATGATTCCTGTGTTGGTTGTCAATGTTATTTCAAGTACTTATTCTCCTCTGGCCCAACTAAT----TTTTATAGCATTGTTTTTTATCAATGCAAGTTTTATTTCTGAGAATTTAcggatataaaattatatatatatacagttttcatttcttttttcaaaataaactggTCAGAAAATTCTGTAAATTTGGAGTAGCTTTCAAATGACTGACCATTTCTTTAGTACTACA-TTGCATTTAAAAGTTCTTGTTcccttaaataaaatatgtttac------attAGAATGT-------CTCCTTTTTACTACTTTAATTAAACTATAGGAATGTTTATTACATAAACAATTTAAGTAATAGAAAATATCAGTTCTTCACGTCATGCTTTAAGATAGATACTTTTTGTTCCAATTTGGTTTATACT-GTTTATAGATAATACCTTGTGGACTCtggtaaaaataaaagtcatgttGCAAATCAACCTACACTGACATTTAAGCACATTCGGAGCCTATAATTTGAGATCATTGAC-CATACAGAATAAGGCACTTTTCTTACAAGTTTGCACATGTGGAGAATTACAGGCAATCACAACTGTTGAAAT----AACACTG----ATTTTCTTGTGTGTTGTTACAGTAACCACAAATATGGAGACAGTATTTTC----TCAAAAAGCACACGT-TTTCCCCTTGGAGCACAGAGGAGCTTATATTTCCCACTTGCTGCAGTGAGCTGCCGGTCTGCAGCAGCTGATGCCAGATGCTTTGCAGATGCTGCAGCCATGATAATGTATTCAGGATGTGAACAACTGCAGTTAGGCCACAGAAGTTTCTAGATGTGTTCAGTCAACTTCTGGCCTTTGCATGGAGCATAAATATACACTGCTTTGTACACTCTGCATATTCGCCAGATTGGAAAGGGAAGAGACCCTTGTAGAtggtcaccaaaaaaaaaatctatgaagatGACGGGAA--AAGGTAATGAAATTTTCATTCCATATAATTTGGAATCTGACAGGCAACCTATAA--TGTTTGTTGTTAGATGTAGAATATGTGCCTGATTTGAAAAGTTTATGTTACAGTCTATTAGTCCAATA--ATTCAACA

a score=20632
s chr3           158677203 1123 + 160039680 AAAATACAAATGTGTTTCATGCTATTTTCATAGGTAGATTG-TAAGATAATTTAGAGAATTTTC-TCATAAAGGAACATTACCCTAATGGTAAGGGAATCTTTTTTCTACCCTGATGTGAAT-------TAATACA---AACTTAAAGCTAACCCTAATGCCAACAATTGCGTGTAGGTAACAAGCTACTCTGACAG-------GTTAACTGATAAGTGTGTGGAAAACCCACATTAGA-----AATTAAAAGTGCCAATCACATTTCTCAGCTGTCTTTTCCA-AGTCCTGGTCCTACTATTCTCATCAT--------AGATAAATTGTGCTGATTATTTTCTGCCTCTTTTTCCT---------TGTACTGCCTTTTCTGTGAGTCATACCATTTTCAGTAGTGGTGGAATTTGTGAACTTTTGTTTTTTGGATTTTTTTTTTTTAATTT-TACTGCATGTTTTATTATTGCTGTTACAAGACTAGCTTATTCCAATCTTTAAGATGTCATGAGCTCAGGTAGAG--TGATGA-GCATGCATATTACCAACCATAAATATCACTCTCAGAAGTCATCATGTTACTTCGAATACTGAAGTGTTTCTAATCACACCTATACATCTTAGTAATATGATTTCACTATGTGAGCCAAAAATAATCATTTCT-TAATATATCTAGAATTGGAACATAATAAAATGTTCAATTTGTAAACTTAAAGAATCTAAATATTCTACTTGTACATAATATAATTTCAAGCCAAAGAACAATA-AAAATTTAAAGCTAAGC-TTGAAAAAGAATTTATAGCATGCTGCCTTGTAGTGTGATG---CAATTAACAAATATTGTAGAAGAATTAGT--CTTTATTGAGAACTTTGCA--TACAAAAAGAGTCATCCATGATATGTGGACCTGCCCAAC---CCTTACATGCAAAGAGAACCCA-----ACATT--GATGTCTGCACAGAGTA---------------ATTCTTTTAAAGCCACTATGAAATTTCTAAAAAAAAAA----AAAAAATGTTTTCTACAGTCATTTTCTCCCTATAATCCCTAGGAGAATAGTCACAGAAGCTGACCTGCCTAATAAGTTGTGCCTAATATATGTTTTAAAAAG----GCTATTTAATCAGTGATT------TGAAAATTACTTTCCATAACTGAATCTCATCCATAATACAGTA--ACTTCATTT
s HiC_scaffold_1 146037106 1173 + 233722169 aaaagaaaagtaggttttctatttttcttatagcTGAATAACTAAAATTATTTAAGGAAATATCAGGATACAGGAGTATTTTCTATCCAGCAGGTGTAAATCCCTACTAGTATGACTTTAGTGATATTCTAATATCTATAATTAGAAACCAATTCCAAT-------ATAGTAATTAATTAGCAAAGCACTATGTTGGTGTTTTCATCAAGTACCAAGCATTTGGTAAA---ATATTACACCTATAATTAA---TCCTATATGCATGT----GATGGCTTTTCAATAGTCCTACATCTACCTTTGGCATCATTATTTCatagttaaatt---ttaattgtatctagttttccttttccatcctccaatattatgattttattataagTCACACA-----TAGTATTATTAGAACTTGGG--CTTTTGTTTCCtgg---ttttatttctaatttgcttTGCACACTTTATCCTCCTCACTATGAGTGTAGCTGTTTCCA----TTAAGACAATGATAGCTCAGATAGGGGATGATGAAGTGCACATATTACCAGCCATAAATATCCCTTTCAAAAGTCATTGTGTTATCTTGAATATCAAAGTGTTCCTAATAACACCTATATATCTTAGGAATGTGATTAGACTATGCAATCCAAAAATAATGATGTCCATAATATGCCTAGAATTGCAATGTAATAAAACATTCAATTTGTAAACTTACAGATCCTACACATTCTGGTATCGTGTAATG-AATTTCAAGGCAcgaaacagtgtgatattttaaaTGAAGCTTTTAAAATGAATGCATTGCATGCTATTAGGTGCAGTGATGCCTCAATTAACAAGTACCATGGAAAAAAGAACTGTTTTATCAAGAATCATGCAATTGAGAGAAAATTCATACA----AAGTGGAGCTTTCTATTCTACCCTCCACACAAATATTCCTCAGGTTCACATCTGTATGTCAGGACCTAGTGAAAAATATGTCAAGCAACTTTTAAAAGTCAGGataatatttgttttagaaaacttttaaataattttttttccat---ttttctttctgttattacTGGGAGACTATTC-CAGAAATTGAAATGTCTGATGATTTGTGT---GTCTACCTATTAAGAGGAACAACTATTTGGTCATCTATTATTGCATATCAAGTGCTTCTCA-AACTAGACTTCAATCATTGTgtattattactttattt

a score=32208
s chr3           158690050 1505 + 160039680 AATTTAAGAACCAAAGTTTGAAATCTACATAAAAGGCATA-CCCTGGGAAATGAGATTAAG----GAAGAAAAAGAGTTTGTGTTTATATATGGCAGCTTATTAATTACTTGGGCA---CTAAGCACATCTAGAACTTCTTACTGACTGATAACTTTAGAAGTCCTTCTTATGTACATATTTAGGGTTCCTTAGTATCTCACACCAGTCCTATTTACAGATGAGCTTTTATTCTTAAAATACCTAGTCTTAAAAGACCCAAGTCTCCTGTGCTAAGCTTTTCACCTAATGCACCTCATCTTTATAGATGATTACTTCTATAAAGACTTTCAATCTCTCCATCTAGATATGAGTACTCAGA--CATCTCCCCGTTCATGAAACTTAAAATTATTTTTTTCgccagatggtggtggcgcatgcctttaattctagcatttaaaaggcagagacgggcagatttctgagttcaaggccagcctggtttacaaagtgagttccaagacagccagggctacacagagaaaccctgtctcaaa-----------aaacaaaaAA-----CAAAAAACCAAAAGAAAAAAATTCTTTCTATGATGCCATTATGTTTAAAGTACATTTT----AACTTTATACATATCAACTCTCTTAGTATATATAT---TTCTAATCAGATAAATG--TTTTGCTAAAGTTTTGTAGTACATCTGTTCTAAAAGGTAAAA-CCTTTCAGCTTAAATAAGACAAGGTCAATCTCATGTGAGA-TCTGTGACTCATAGACTCAGTATCCATAGTCTTTCCATTTAATGCAGCTCTTGTAGAAAAGCCAGGCCCTGTCCTCTTGCACAAGCTTGAGACAGTGTCAATGACTCATTAA-CATGCTATTCGGCTGCATCATACCATTGATATCTGCTGTGTGCTCAATAGAAGAGTCAATTACTGTAATACTGTTGCTATTGAAC-AGTGCACATGACCCTAC--TCAAAACAAGAGCTTAAATTAGATCTTATCCTA-TAAGCCAGCTC------TGTTCTCCACTGGTGGTGAGTCAGGGAACCTATCAGTAGCATTTTAGAGTTCATCGTATGCTTTCGAAACTCATACAATATTGAACATATTATTATTACATAATTATTTTGCAGTGCCACGAGAGGCAGCGGGCTGGAGGTGTGGCAGAGTAGAGACTGTTTAATGACATGGCTCAGTGTGTGGCATGACATCCATATTTCTTCCCAATAGGGGAGCCACTAATGTCATAAACAGAAAATTAAAAATCAGCTCTTTCAT-AGAAAAGTAAAGTTGCCTCCCGTTGTTGTTATT-TGCGGAGAAGACAGAGGCAGCTAGAAAATCGGTAAACATATA-AAAACA-TGCTGCCAGGCTCAGCAGGACATGTGTACAGTACTCTAAAGGAGAGCAAACACCAGAGCTTGTGTTGAAAATACATACCAAGATTTTTTTTTTTACCTCTGGTTTTATTGTACCCTTTATATTTTT--TTTTGGAAGAAAAATACAGCACAAAATCATTTTTAAAAATAAGTTATTTGTA
s HiC_scaffold_1 146053220 1406 + 233722169 AATCTGAAGCTCAATATCTGGGGCCTaaatgagagacacagacatAAGAAACAGAATTAACAGGCGAATAATGAAAGTTAGTGTTTATATACTGCAGCTTATTTATAATTCAGTAAAAGCTACAGACATCCATAG-TTCTCCTTGCCTAACTACTTTGATAGACACTCCTAATTTGATATTTAGGTTTCTTCAGTATCTTA-----gttct-------------------------------------ttaaaatgctttaattttgtgtgcCAA---TTGCATAGGTTTGAACTTCTCTTTA-----GATAAGTCCTATAG----TTTGAATCT-----------------TATTCAGAACTATCTGTGTCTTAATGgcatttacattttcttgttttaactcATGACG--------TGCT----ATTCAAACATGTA-------------GGCAACTTTGTGA------------CTTGTCTTAGATAACAGCTTCT-------CCATGA--ACCCTTTTAACCTCTCCATTAAATGTGAACATTCAGACAACTAAGCTTGCATAAAGCTTTATTAACAGTATTGTTTACACGATGTTCTTATTCTCAtagtacatttataaaaattctacatctgtggattttcttttaatatctatCAGTTTTAGTTAGGTGAAAGGTTTTTGTGAAAGTCTAAGAGC-CATGTATTTTGGAAGATAAGAGACTCTCAGTATCTA------AAGGTCATTCtcatataaaaatttaagcatcatggGCATAGAATCCATCATTTCTCTATTACATGCAAGTCTTACAGAAAATCCAGCTACGACCCTTTGGACCAAGATTGAGGTGATATCATTTCCTTGTTAAATATGTTGTTCTGCTGCTGTGTGGTGTTGACATCTACACCGTGTTCAATAGAAGAGTCAATTACAGTAATGCTCTCAGTATCGAACCACTGCTCATGACCTTTCCTTGAAAACAGCAGCTCAAATTGGATCTCATCCTGCTAAACTGGCTCATTCTTTGATCTGCACTGATTGCTTGGCATTAAGTCTATCAATAGCATTTGAGAGTTTATCATATGCTTCTGTAGC-------------AGCATGGTTTTATCACACGATTATTTTGCTGTGCTAACAAAGCTAGCAGGATGGAGGTGTGGCAGGGTGGAT-CTGTTTAATGACATGGCTCAATGTGTGTCATGAAATCCATAGTTCTTCTCAATGGGGGACCAACTAATGtcataaacagaaaattaaaaatcagctcTTCTGTCAGAAAAGCAAAGTTCCTTCCTGTCATTGCAATTGTGTGG---AGACAGAGACTATAGGAGAA---ATACACATATGCGAAACAGTGTCAGGAAGCACAACAGCACACATGCAAAGT-CTTTCTCAGAGAGTAAATA-CAGGACTAGTATCAGGAATATTTACCGTGG------AGTTGGCCTCAGATATTCTTTTGCCCTGTGTACTTATCACTTTGAAGGAAGAATAGAATACAACAGCATTTTACAAAGTAAATGActtaca

a score=5568
s chr3           158694626 306 + 160039680 gacgtgacactgtggtgatcacaggcaggttgcataaacttt----gtttcagttttcttattactaaaat---gagTTATATGTACAAGTAAATGTTAATGTGCGTGTTGCTGTCCAATAAAAATAAATCC-------AATAAAAAGCTCTCACATTTGCTTTGAATTTTCCCAGGCAAAGTTTCTATTTCAAAATTAATGTAGGTCACCTTTAATTATTTTTCCCTTCTCTTACCATTTTCTTCCTTTTAACCAGCTGATTTAGTCTTTTCTAAGTAAGAAAGCCTACAAGGAAGAACTCCTAGACTCTGAGCTAAGA
s HiC_scaffold_1 146057848 273 + 233722169 GGTGTGACATTGATGTGATCTTTACCAG-TTGCATAAACTTTTTGGGCCTCAATATTTTCATGAGTAATATTTGGAGTTTG--GAACAGATGAACGCTA------GAATTGTTGTC-----------AGTTCTTTCTGAAATAAGATGTTTTTGGGTTTGCTTTGCATTCTGTCATGTAAAGTTTCTATTTGAAAAGTAATGTAGGTCACTTTTGTGtctctgtgcctctg------------------------agctggGGTGGGCTTCTTTCCATGC-AAAACCTGTAAGAGAGA--CTGTAGACTCTGAGTTAAGA

a score=14376
s chr3           158704803 486 + 160039680 CAAATTCAGGGAAACTCTACAGTCAATAG-TAAGGCTGGAAAATTCCTTCT--TCATTGGTCCCTGAGACACTATTATCAGTTACAGCACAAGAGATCATG---TGCCAAAGAAACTGTGGCACACATCTAGAGATTTAAAAGCACACGCGTTTAGATTTTGTTAAACAAAGAAAAAAATGTCCTGATTAGTGTTGAATATATGATACAAGAAAATCCTT-GAGAAATGACATCCATTGCAGT-----TAAAGGATTATTAGAGAGAAAGCTCTGTCCTCATTTGTGTTTTAAAATGCTGTCAAATACACTGTACTGATTAAACACTTGCCATAAATCCACAAGACAGGAAAAACGACAAACATCAAGCCATTAGCACATCCTTTGCCATAGAGGAGAGGGAGCCTATTATTTCAAAAACATCAAAGTGCTCTTGGTAAAGATTGCTAACCAAG-----------ATGCCAGCTCCAAAATTACCACTGAAGATAGATCTTTACATCTC
s HiC_scaffold_1 146058504 495 + 233722169 CGAAATCCAGGAAACTTCACAGTCAATGGATGACGCTGGGAGATTCATTCTCGTTTTCAATCCAGGATATGCTCTCATCAGTTCCAGGGCAGGGGATTATCAGCTGCCAATGACACCAGGACCAAGTTTTGGGAATTATAAAACACACTGCTTTAGAATTTGTTAAACGAAGGGGAAAATGGCCTCATGACTGTTGAGGACAGGATGCCATAAAATTCTTGGAGAGATGACATCCCTTGCAGTCACAATAAAGGATCATT--ACAGAaaactgtgtttttgtttgta-tttaagaTGCTGTCACACATTAAATACAGATGAG--ACTTGTCTTAAATCTGTAAGGTATAAATAGATACAGACACGAAGCCATT---------CTTGGCAAAGAAGAGGGGAAGCTTGCAATTTCTACAACACTAATGGCTTCCTAATGAATATTTGCATCCAAGTATTCTGATATTTGCAAATTCTAAAATGAGTAATGAGGGACAATCTCGATATCCC

a score=18564
s chr3           158706763 2274 + 160039680 cctttgtggctctttgctctgccctctagccacctcgttg-tactctcagggttgcagggttttcctgtcaa-------------------tcatgaaaaattaca-gcttttggagt-tgagaacatttgtgtgcttccaatagaattttagggggtcaagaacttcttt-agttttgtagtcttttgagccttatctataatggaagtatttctattgacctaattttaaggagttcctgtggatgttatgggggattca---------ttctgctagacaaaagccatatctacagacttctaaaataat----tttcaaccctggttctggtttgcagtttagagacag------ctcttgaaa---gcttcctaaaagtgatttgattgagaggatctgctggacacacccttaatctcctGTGGATGAATATTATAACCCTGTGATCTCTCCAGGTTATGTCACAGGACAGTAGAATCAAATCACAAGCCTTTCTCCTAGCATGAGCATATGAAGCATACCTCCAGA----AAATCTCCTCTTAAATAAC-CTCCTGTTTCTCTCTCCTTGTCCTCATTTACACTTATTGCATTGcattttattataagtagcaaaaacaa--caaaattagatctcgactctttacttcattttgcttgaatatttctttagatctatattcacagtatccatatttatcaattacataagttctgtcttcacacacacacacacacacacacacacacacacacacacacacaactgtagg---cagtttctactaccccaccctaagcatcaagcatccagctctctt--gctctactttacaatagtg--------------------------tcaatggcattttcagtgttcacacttccattaaaagtgtttgag-caacataagcttttcccagtatagtactcatcattctcctccaaaaaccaacttactc-ctgctcagttcctaggtcagtcctcgtttttagttatttatgacagtcatgttccacccctaggcagtagaatTtgttagctttttattgcagtataacacattgccataatttaacagtttgaaactagactcctttacccactcatttttataactctttataagtctgggaatggcacagtaagattctctactcaaggcacacag-gctgatgtccaattgtcttctgggactgag------------------------------aggtacactacctttttgaagaagttgattcctagggattgtggagc------tatggccacccatccttgttggttaccagctgagtaccactctGAATACTTGCTAGTCTAGCCATTCTATTGGCAGTTTATGAAATGAGTGCTGACTCTCACTCTGTCCAGACAGACTCATCTCTTGGATACTTGGTACCAACTGAAAAAAAAAATACTAAGGGTTTAAAAGCACATCTGATCTCTATTAAAGTCAATTCTCTGTGAATCTAAGGGCAACATGAATCAGTCATCCTTGTCCCTAGGATAAGACAGTGCATGCTCATTGGATTGTCAGAAATCGTAGGGGACAACTTAAAATTCCATATACCATGATAATAATATTTTGACATATACAATGCTTAATTTTTAAAGCTTGTGTAAACTGAGTAAGATTCATTTTTTGTAgttgttgattttgtttttttttgtttttgtttttgtttttgtttttgtttttgtttttgttttcaagacagggtttctctgtatagctctggctagcctggaactca-ctttgtagaccaggctggcctcgaac------tcagaaatcca--cctgcctctgcctccgaagtgctgggattaaaggcgtgcgccaccaccgcccggcCTGAGTGAGATTCTTTTTGTTTCCACAAGAGCAAGGCAACAATAATAGCTACAAAGTTACCAAAATTATTGTATCCTAAGTTTTAATATTTTAACTATTTTGTCATGAATCCCAATGAAATCCTTCTTGAGATAACAAAATTCTATATCCCAAATATGGCT-----GAAATTCAAGTTTTATATGTAATGATTTATAAAGAAAAT-TCTTTTAAACACAAAAACTTCAGTTTTACTCAGAGATCAATCATATCTCATT-TAAATATTCAGCTTATAGAAATGTTTATGGAAATAAGACCAACAATGCATATTTTTACCTTGTATGCAGTTTTATATTAATGAATACAAATGACATGTACCAATGATAAAAACAGCTTGTGCTTTTA-AACTGCAGATGAGGAAGACTTGTAGACCTCAATGGTAGTGTTGGCTACC----------ACAAAACACCCAGGGATATCAAAACAAAACAACAAAACAAAACAGCATCCAAAATGT-------TTCTGGGTCCCAGTCCTAATGTT
s HiC_scaffold_1 146059808 2033 + 233722169 CCTGTGTGGCTCTCAATTCTGCCTTCTGGGGATTTGGTTACTGCCCTCGG---TTCTTGGTTCTGCTGTCAGAATCACTGCCCTTCTTTTTGCATGAAAAGGAGCAAGCTTTTATTGTATCTGAGCATTTTCATCAGTCTGCCAGAAGTCT-GAGGCTCAAGCACCTCTTTTAATTTCATGCTATTTCTTG--TTCTCCATGGTAGAATT-TTTCCACTGACACAGTTTTCTCAAGGATCTGTGGGCCCTCTGTGGAATTTGCAGGGACTGTTCCACTAGCTGAAAGCCATATCCACAGAGTTTTGAGATAATGGCTTTTCTGTCTTGATT-TCTCCTGGAGTTGATAAAAAAACAAGACTCTCAAAACAGGCCTC-------TGGTTTGATTGAGAGGATCTGTGTGTCACACCCGTAATCTCTTCTGAATGAATACAAtggtattttcctcttttaaggT-----CAAAGGGCTGTGGAACCCTAGCCTCAGCCTCTTCTCCAG-------------AGCATAGCTCCAGATAGGGAATCT----GTGAGTGTCACTTCTCCCAATCTGTCCCTCTCctc----------------tctcatttctctgtaaGCATCAAAAAGAAACCAGGAGGAGCTTCCAGATCTTTGCTTGGCTCTGTTC----------TCAGCTCTCTATCCAT----------TTCACTACTTATGAAATTCCTGCTTTC---------------------------------CATTTA-ATAACTGCAGAATATGGTTTCTATCACTACAT----AGCA--AGGAACCCTCCTCCCCTCAGCTCCAATTTAATATAatggatttttatttcctttacccCGCAAATCAGCACTAGTTTTAACATCCATACTT-----------GCTTGAGTCAACTAAAGTTCTTTTCACTATGTTCTTCATTGTTATCTTT-AAACACCAGTCTTCTCACTGCT-AGTGCCAAACCCCATCCACATTTTTAGCGATTTGTTAGG----TGTACCCCCATTTGACaccaaaatctgt-atttttttattgcaaGGTAACAGATCCTTATGATCTAGCAAATCAAGATGGTGCCTATTTATTAATGCAGTTATATAGGGC---AGGAAGCTGGAGGTGGCCCCATGGGATTCTCTGCTCAGGATATCCAAAGATAAGGTCGGAGGGTCCATCCGGGCTGTGGTTCTCACCTGTGGCTTCCAGTCCCTGTCCAGCCTCACTGGCTATTGAAAACAGTCAGTCCACAGGAACTG-GGAGCCCCTTTTGAGGCCCCCCACCCTTGT-------CAGTTGGGGTCCACTCTTAA------CTTGTAGAGTCTCCCACCCCGCAGTTTAAAAAGTGGATGCTTCCTTCCAGGCTAGCCAGA---ATACATCTCTCCCACACCTGGTACCAGCTGGGAAAA---------------------CGC-TCTGGTTTGTA----------------ATGGATCTTGGAG--ATGTGAATGTGTCA-------------GGTCAGCTAG-GCAATCTCACCTTCTTA----AAGTCGAAGG-------------TTTTATATGTTGTAACA------------CAATCACAA----------------------------GAGTGAGATGGAT-------GGCTGCACATC--------------------------------------------------------AAAAGGGTG-----GAAAATCT-----TAGCGGAGGACTGAGCTCTGTCCACTATGCTAACACCGAACGTTGAGTCAGCTAGCCAGTCTAGTGTCTGTCTCTAGAGCCCTACA--TAAA-----------CCTCAGCTCTACTC---TAAGATGCAGAT-------ATAATATCGAGGAAGCAGTACCAGTTGCAAAGTTCCTAGCATTATTTTATCCTACGCTTTACTCTTTTAAGTAATCCTTGCTGAATCCTAGTGACATCTGTGT--GAATACTGAAgctcaatttattaaaaataatttaatagaaaCCTTAG--TGATATGTA------CATgaaggaaacatcttttaaacacaaagaatttaaatttatccCCAAATCAATCACATTTTATTGCAAAAATCGACTTTATAGAAATCTTCATGGA---------AAAAGTGTATGTGATCACTTTAAACACATTCATCTATTAGC-----TAAATGTTA---ACAAATGG-GAAAGTAGTTT-TGCATATAGAAATGCAGCTGAAGAA---CTCAATGCTCTAATGAAGTGGTTCTCAACCTTCTCTGGAAAAAAAGCACCTAAGGatgttgaaa------aacaaaacaaagtggaat-AAAAATATGCACAACTCCTAGGTCTTATTCATAAGGCT

a score=15426
s chr3           158714370 874 + 160039680 AAGCCTTGTCAATTTGAACCTAGAATTACTTAATTCT-----TTTATTATAATTTCCTTAT-TACATTAAGACCCTATT-TTATAAAACATGTTTATATGACTACTTAAAACAAGTGAAGA---GAAAAGGCCATAAAGAGAATTTTCTAATCTACATACCAAGATAA--TCCTGTGTTCCATCTAATCTCCAGGGGACTTGGGTGAGAAGAGGGAGGACAAACTAATAAATCTGTTGCATCTGTAATACTGCTAATTTTA--TGTTAGACTAACAAGCCATGGTCACTAGTAATTGG--CTTGCA--CATTTGGCCATCTAGCTCTTAGGATAGTCAAGACTATTAATATGGTAGAAAAGGCAAGGGTCATTAAAGGTCTAAAGAGAAAGTGCAACT-TCAGAGTGTGTGCTGATAAATTTAGGACAATAGAGATATGGGAACTGTGGGCCCTGAGTAGCAGAATTTAACACATAAGCAT-TTAGGAGC-------AGAGAGATGTGGTGAATATGATCCTGACAATAGT---TACCACATCCCATGTATGCACTTGGAATGTTTGCAGGCCCTTATT--------AGTAGGCAG----------AGCCATATATCTTAAGAGAGGATTAGTTATAACTTGGGACCTGAATTCAGAGATTTCAGGCCCTCATTTAAAGATTAAGTGAAACTTTACAG----TATATTGGGCACCAGAA------ACTCTATTCATTTTA-------GTGTTCTGAAGTTATACAAAATTGCCTGTCTAAGAATCTTATTGTGATC-TAT-----CCTTCATTTTCCTCAAGTGTGCATTGGTTACAGTCTTGCTTTTTCTATAATAATTTTTT----------ATTCAGTTGCCATTACGTCCCATATAAAACTCTATATTAAAA---GCATTTACATTCCAGCCATTATAAATCCCAACATGAGCT
s HiC_scaffold_1 146069247 918 + 233722169 AATTCTTGTTAAACTACATTTAGAGCCCATTAATTTTATCACCTTACTACATCTCCCCCCCATACAGTGAGTATCTGTTGTTATAGGATATAGATGTGTG-----TTCAAAtaagaaaggattaaaaaaagttaaaaagaaaa-------------acatcatggAAACTTCTTCTCCTCACTGTAGCCTACATGAGA-----ATGAGGATGGGAAGCAGGGATGAAGAACTCAGTC-CATTTTTATTCCTGAAAGTCAAAATGATTTGACTAATGCAATAGAGTGGCCGGTAATTGGGCTTTGCATCCATCAGGCAAGCTGGCTAGTAGAACAACTAAGGCTATTAATATGGTAGAAAAGGCAAAGGACATTAGAGGTCTAAAGAGAAAGCACAGTTAGGAGAGTATGTGCTGGTAAATTCAGGGCA------AAGTGAAAAC--TGGGTCCTGCATCACTGAATTTAACTCTCAGGCGTATCAAGCGCGAATAAGAGAGAAATGCAAAGGATGTAGTCTTGGCAACAGTGACGACCACATCAGAAGTGTTCTCTTGGGAGTTTTCCAGCTCTGTATTTTGGCAGAAGGAAGCAGTTATAACTTAGGACCTGTATCTTCAGAGGGAATTAGTTATAGC-TAGGACCTTTGTCCTCTGAGT---GGCTGTAACTCAAAGATGCAGAGAAACTTTGTAGATCAGCTGTGGAGCAGTGGAGCAGGGTGCTTTATTCTTTTCATAGCATTGTTCTCTGAAGTTATGTAAAGTTGTGTGCTTGCTAGTTTTGCTGATATCATATCTGGACCTTCCTGTTTTCTCAGTCCACAGTGATTGCTGAAGTATTTTTTCTGGGGCAATTGTTTCATGCTACTcgtttatttg-cattcattttcaCATGAGACTTTATAGCAAAAAAGGAGTTTATATTATA--CATCAGACACCCCCA-ATGAACT

a score=28597
s chr3           158744163 2026 + 160039680 AATCTTAGTAGCCATAGAAACATTACCACATTCAATCTGTTCCATATTAA-AAATAACTTTTTGTTACTCTATATCATTCTAACTAGGAAAGAAACTATATTCTATTATAATTAAGACAGTCATTATTTGTAAGGATAAATATATAAAAATTGCAAAACAAAACTAAAACCCCAATTTAGCTATTGTGTTTAGTGGGGAAacacacacacacacacacacacacacacacacaATCAGTAGTGAATGTCATTCCAAAATACCA-------CAGATACATAAT-TATTGTATTGTGTATATTACTGCAGAATGTTTCTGTTCATTTTTCCCTTCTGACAGAGAATAATCAGTACATGTAGGTTA---TGAGCATTTAATGGAAGAAACAGAATGGAGTCTATTTTCCTCTTAGGCAGTTTATCAGTTGATTTATTTGTGAAAGCATAGATGAATACTCAATATAAAACTTC-CCTTAGTGAGATACTAACAAAATGAAAA---TGTAGCACACAGTAAC-ATAAGTTGAAATGGCAAAGTGAAAGTGAGGAAAG-AAGTGGAATGTGTCTAGGCAAAGGTAAGATGATGACTCTG-----GCATATCTTGGGT------ATGAGAA-------TTCTACTAATGAACCAAAGCTTGGAAAGGTGACAGTGCTGAATATATGT-----------GGAGGAGACAACATGAGACAGAAAACAGAAATATGAAGCAGATACATATCTGGAGCAT-GAAGAAGTCAAGAAATGTTCACTGTGACTGAAACTGAGAGTAGGAGAGGGTTAAAAAATGTCATAGCAGGGGAC--ATAAGGGGACAAACAGGGAATTGTATTTCCTTGACCATTTCTAAGGGTTAGGAATTTTAAAACACCAAGTGAAGACTTTACAAAAAAAATTCCAGAAATAGTGGGAAAGTAAATACCTTAAA-----GTACAGGTTTTAAAACACTGATCTACAACACACTACATGTAAAGTAAATTGTTGATACCATTCTGTTCACCACCAAAGATATTTTAAGGACACATAGCTTTT--------ACCACTTCAATATTATGCTGAAGATCTGCATGATAACCTCAAAGCAATAGCAGTCAAGTAATGACGAAAGAAAGAATTAAAAATTGCATAACCTGCCATTATAACAGATGAGATGATTGCTATTAAAAATTACCACTGTGtatgtgcaacaataata-ataaaaaaagaggctatcaatttgagagtagaagg----------------------aagcacaggcagtgtttgaggaaagtaaactaatggggatggagaaaa--gaaaaggaagttggtaagtgatgcaattttattttaatttaaaatgtataatatt---aaaaAGTAAATTGTTGATTATAAAAATGTAATTTTAAACAACATTA-----TACATAGGAGATGGAA------AGATATAAAATCTAAAAGTAAAGCAAAAACATCAATTTATAAGTTTTG-TGAAAATATTGTAA---TTATTTGAAAGTAAAATAGAGGAATAA-----------------ATTAATAGAGTGTTCACTCTAG-------------CCCCACTGAGACACTGT--------------------------AGAATTTTATAAAATAGCTTTTAAGATTATTTAAAGGAGTACAGAACCAAAATAGCTATAAGGAAGAATATATCCTACATTATAGTAAAAATTACTATGAAGCTATAAGGGTTTTAGTGGAATGTATTGGACTAAGAATCGTTTTCTAGG-AAAGGAAACAGAGTGGAGACAGTGTAG-------------CATGAAGAG------------AATGTATGAT-GTCAGC--TCTAGATCAGTACGCAGAAAT-AGATTCTAAGTGCCTGGTT-TAGGATCATTGCTCACTTCAGAAAAATTATATCAAATAAATCTCTTTCATCACTATAAGATGCAAGCATAGTCAATAAAATAGAAATGGAAAA--CTATTAACATGATATAATGCatttatttatttatttatttatttatttttat--------gtttatCAGGCTTTAA-CAAGACGTGCAAATTAAACAGCAAATTATTGATAAAA-ATATTATTGAAGTAAAATTAAGAAGTTCTAATCAGAAGAGAACATAAAGAAGACATATCCAGGCTAGTAACTGAGTAAATGATGCAGCATGTCTAACCAA
s HiC_scaffold_1 146081564 2111 + 233722169 aatctCAGTAGTATTAGATACATAATTTGGATTAATCTGCTTCATGATAATAGGTAACTTTTTATTACTCTGCCTT-TTTTAAGTAGGAAAGGAACAGTGTTCTTT---AACTAAGACAGtcattatctaaaaatatatataaagaaagatt-caaaacaaaaccaagaccaGGATTCAGCTATTGTGCTTAGTAGGAGAAAATATA--------------------------ATCAAGGGAAGAAATTGCTGCAAAGTCCCATGTCCCACAGATAAATAATCTAAACTATTA-GTGTATTACTGAAagtatttttggaatatttttcccttttgataaAGAGTAATCAGCTCACCTCGGTGACAGTAAGCATTTGGTCGAGGAAACAGAATCAAGACTATTTGTCTCTCAAGCAGTTTCTCAGTTGATTTCTTTGTGGAGGCAGAGATGCATTCTCAAGGGGGAGATTCTCCTTAATAAGACACTAACAAGATAAGAAACGTGTATCTCACGGTACCGATCTGTTCCAGTGGCAAACAGAAAGTGAAGCAGGAAAACAAGAAGTGTC-AGGGGGAGGTGAGAACAGGATGTTGAGGGCACATGGCAAGGGTGCTGCAATGAGACGTGGTCTTTCTAGCAATAACTgcagactgaggaaggagggggTGACCCATGCAGGTCCAGATCTTAAGGAGAGGATAAAAGAAGTAAGGAAACAAAAACGTGAGTCAGCAGCATGTCTAGGGTGCAGAAGGGATAAAAAGGAGCTGTGTGGGCTTGGAGTCATGAGCAGGAATGGGAGAGGACATGTGGTGGAAAAGAATCAGTGAGGTGGAGAATATAAAGC--CCTCACTGTGACCACTTAAAAAGG------------AACCAC----TAAAGTCTTT-CAAAATAAA-CACAGGTCCAAGAGGACAG-AAGTTCCTTGAGCTGTTATAGGAAGTTTATAACA-TCATCTG-GACACATGATATTGAAGGTGAAATGCCTGTGTTGCTCTCTTTGACATTAGGGACCACTCAAGGGTGCACAGTTTTTTCATTCTCATCATGTTAACATTACTCTGAAGGTCCAGGTCAGAATATC----TCATGAAAGGCAAGCTACAGGGATAGAAAG----AGAAAT------ACCTGTCAGGATTGCAGGCGATATGATTGCTATTAGAGATTGCTATTCAGAGCGGGCTGTGGTAGCACAGAATTGAAGTTGCAGTC-ATTTGAGATATGGCGGCAATGTCTAATGTTCACGTCCTAGGTCTGTGAATGGCCTGAGCAAAGT--ACTAAGAGGCAATCAGGAAAGTGAAAACAGAACACgaaatcaccacagact--tctTAATATAGTAAGTTAAAGGTCTTGTAAGAGTAA-----TGGTTGTCAAactaatatgtaaaataatagtAATGCTTTATTAGAATATGCAATTTAATACATGTGACATCCAGGAATAAACCACAAATAAAAGTTCATGATCTCTGCTAAGAAGATGCTAATGCTCATATGAGGATATAACACAAGGCCAAAATATGGAAAAGTACCCATAAATAGAACATCTCCTATAATGAAAAACTGCTTCTACATAGAATTATTGTGATCAATATTTCTGTAGGATCCTTGAAGAATTTTACAAGctggttttaaaaattacttcagaGAGTAAAAGACTAAAATAGTTCTAAATATGAACAGTGTCTTTACTATAAAGGAAGTCACTCTGAAGCTATGATAGTTTTAATGGTGGGAATTGGTTCTAGTATAGTTTTTTAAaccaatagaacagaat--agacaGTTCAGAAATTATCACATTCatacatagaattttaaatttaatttatgacAGTCAGTAATatagattaatgaaaaagagtGAGATTTTCCACGAATAGTTCTGGGGTCACTGGT----------------------ACCAGCCTACCTTTACATCATTCAGTCcactgaaaattaataaaaaggaaatagaaacctCTGTTAGtattatgaaaagaaataagata---------------gaTTTCACAGCAGAGGAGTTATTAAGCAGGAGCCAAGTAGTGAcaatcaaa-agtgaaatattgataaaatatattattaaatttaaattaagaacTGATCATCACAAGACATCTTGAAGACCACAGATAcaagcaaagaacaaaaaagtTTCAGTAACATATGAAATCAA

a score=10161
s chr3           158747464 857 + 160039680 AATTAGTACTTGGTCTATAGAGCCGACACTTGGGCTCTTCCCACAATGCACAGGCAGACCCCCAGGACTCTGAGATTGTTAGGCTCAAGAGATG-------------ACCTTAACTGAAAATACCAGATTAGGCATTTGCAGTGTAAGGGAACAAACAAG---ATTTCTAAAGATGTTACCT-GGCACAAACATTGTAGGTTTTGTTGTTTGCTTACTTTATATTGATGTTTAATTTTTTATTTCTACTCCAAGTTTTTGAAACTTCAGTTACAGCTTTGTATGGTGTGGATCTCAAAAGTCCATTTGAGTATTTGAAATCATATTTCTTTTTCCTAAACAAACAGCTTTACTATAAAACAATTTTGtctgtctttcagtctctgtatctttatctctgactctttctctttgtcactgtctctctgtctctctctcGTGCTGAAGTGAGCTGA--TATGGCAGT-TATTTAGCATGTGACAATAA---GAGATGTTAC--------------AGAGTCTTATACAATAAAGATT-CAAGCTATTAAA-AGGAATTATCCATCTGTGTTACCAATTTACCAATTT----AGAAGAGGA----TTTGTATGAAATTACTGTTGTGTTTTCTAGGGGAAGCATTTGCCTTTTAAGATACTTTCTTCAAATACAGACTGTACTTCATTTA-AGTCTATAAAGACACTTCTCCCAGT-------CTTTGGAGCATGTTAAATAATTCCTGTGCTTTAATGGCATCTTAACTTTCAAGCAAGAATAATTTGATAAGCCGCCCCCTGTACTATTCCCTGAAATCTCTATCCACCAGATCATTGATGTTTTGCTAATAGAATCACAGGGCTTTGGC-ATAGAATTAGT-----------GAACATTTCTTTTCATGTCatacatat-gtata
s HiC_scaffold_1 146096256 825 + 233722169 AATCAATGTGTGGTCTG--GATCTGAAGCTAAATCTCTTCCCATAGAAAACGGCCACcttaaaaggagattgaaattgCTAGGCACCAGGGAGGCCAAATCCAATGGATCTTTAAGGAATAAAagctaataaatatttgatgaatcaaggcatgaaaaaatgaatttcttaaaGTATTGCCCCAACCtgaatattat----tttgtt----------------------tctgatttgtGACT----------GTTTTTCCACCTTCAATTATGTCCTTGGGTGCCCCGGAAAGCAACAGCCA--TTGAATCACTGGAGTGA-----CTTTTTCTTAGACAACATGCTGCAT----AAACAATTAAA-CTGTAATGTATtccttgtatattt-----------tttctc-------------cCATGATTACATATTGTGCCTAAAAGAACAGGATTTTAACAACATACTTTACAAGTAATAGGAACTAGTGCTGTTAGTACGCTCTGCTATGAAAAACTTAGTGAATAAAGctttcaaattataaaacagGAATTAGTCTCCTTTATTACCAATTCAGTAATTTCATAAGATGGTGAAATTTTTGTATAAAAGCTACATTGCGCTCAGTGAGG-----------------------TTTCTTCAAACTCAAACTACACTTAGTTTGCAAAGTGGAGAGGCTCTCTTTCCACTGAAGTAGCT---AAGCGTGTTGAATAATTACTACGCTTCAACAGTTTTGTAATTTATATGCAAGATGAATTAGATAAGCAAGCAACTGTCCTCTCCCCCAAGACCTCTCTGTACCAGTCTGGAGATGTTTTGCTCATAAAATCATAAAGCTTTTATGATAGAATTAGTGAATTGGAGAAGAACATTTATTTGCATGTCATCTATGTAGTATA

a score=27002
s chr3           158765895 1195 + 160039680 taaaatttatattGTCATGGTTTCAAATTGTTAGATGTGGTCACTTAAGGTTAATGAAAACCAAAGTGATGTCCTCTTTTCTACCCATAAGGATCTCCTCACTCGGACCCTTACAGTTTTGTCTGT--GGGCTCAGTATGT----GGCATATGCCTCTCTGTATGTTG-------------AGTCCTTCATTATTAGCTACAAGCAAGCCTTCTTATTGCTCTTTTCATCCCA-AAACTCAACTTAGTTCCCTTTTTTTGCAGTTGTATCTGACCCTCTCTCGGAAATATTCCTCAAACAGA-------GGACAGTCCTAAACAGTC--TAAAAACCTTGTCTTAGAAAAGTGGTCAGACCTGAAGTTTTAAATTAACATTCTGATTTTTTTATAGATGAATATGTTAGATAAGAAAATCCAACTGGAAGAAATAAGCAATTTCTGAAATGAGTTTTACAAATAA---TAATAATAACAGAAATGACTTAGGCTCCCTAAGAACTTTCTGCAGCATTCATACAGGCACTCAATTTACTGCTGTTAACTTAGAGTTTTGCATTAATTTTCAGAAATGTTTCATTTATAATGTGGCAAGAACAG-TCTATTTTCAG-TAAATTCTTCACATTTCCATTTTAGGAGAAAAGAAATTGAATGGAGCTACAGATCATAAAAGAAATGTAAAGCAAAAATAAGCAAGCTCTTGATGTTCAGTAGAAATGGCAGCACAGGTCGAAAGCCAAATTTTTCTTCATATCCAGCATCAAATTTATCTGAAAGATTATTTAAGAAGTAATGAAAATTTTCCTTTGGAGGTTATGAAAAGACTTTTACTAAAAGAGTTTTTTTTCAATTTCTTC---TGTGGAGACACACACCTTTAGTTCATAGTcaaaaaacaaaaacaaaaacaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaacaaaaaaaacaaaaaaaaaaaaaacaaaaacaaaaaaaccccaaaaaactccaaaaccaaaacaaaaaacaaaaaacaTGGTAATCACCTTAGCAGTATTTTGTTAGCCTAATGTCATATCACATGGTTTAACAACATTGTATAATACTGCAAAGAAGATTCTTTTAGAGAATCTAGAACACTTATAAATGCTATGCAGCATAGAGAAATGAATCTGAAATACTATAGTCAATGAATGCATATGATTATGGGCCAGGCATATTATCTATG--CTTATTAAT
s HiC_scaffold_1 146111232 1048 + 233722169 taatgtttttatttctatttttcaaaattgt-----gtgTACAATTTGAGTCTTTGGAA-------TAATGCTCTTCTCTCTGCCTATAAATCTTACCTCACCAGCAACCtcacacatttttccttcctggcTTAGAATTCTCTGGGCTTCTTCCTGTCTGTCTTTTGTATATATAAACCCagcactttaaaaataactaaaggcAAAATTTTATGCTGTT--TCTAATGTCATAAatttaacttctattttttttcctatggttATGTCTAATCTCCATTGGGAAATATTCCTGAGAATgactgaaatataaaattttagaaagtcattaaaaa-----------aaaactggtcaAACATGAAGCTTTAAGCTAATCTTCTAATATTTT-ACAGATTAATATTTCCAAAAAGAAGCTCAAATTAGGAAAAGTAAGTAAAATCTGAGATGCgctttacaaataaatataatagtAACGAAAGTAATGCAA-TTCCCTA-----TTCCTT-----TTCCTGTAAGCACACAAATCACTGCTGATAACTTAGGGTACCACAttaattttcagaaatgtttcatttataaTGAGGCAGAAGCAGCTCTATTCTTAGGTAACTATTTCATAATTCCATTTCAGGGGAAAAGAAATTGAATGGAAACACAGTTCATAAAA--AATGTAAGCTGAAAATAAGTAAGCTCCTGACATTCAGTAGAAATAGCAGCTTAGATGGGAGAAGAAAATTTGGTTCATACCTA-TATCAAATTTGTCTGCAAGACTATTggaaaagtaatgaaaatttatCTCCTGAGGTCATATAATATCCATTACCAAAGGAG----TTCTCAATTACTTCGGTTGTGGATACATACAT-------------------------------------------------------------------------------------------------------ACACCTAAACCTTTAGGGGGTAC---ACCAAA---------AAAACACACCATAATTATGTTGACCATATTTC-TAACCCTATCCTCATATTACATGATTTGACAACATTATGGAATACTTCAATCAAAACTCTTTTAG--------------CTTTCAGTGTT------------TGATTTAATATTAGATTTCCctttaaaagaatgtttattATTATGCAATAGGCATATTACCTATTGCCTTATTGAT

a score=11909
s chr3           158778123 333 + 160039680 TCTAAATCATTTCAAGTCGGCTGGGGCTAA-ATACTCAGGGGAAATGAATGAGATTGAATGAGACAGTATTCAAGAATCTGAAAGCTTTGTACTTTAATTATAAAATTGCAGGTTAAATAAGCTAACA-AAAAGAGGACAGGAAATTAAGACAGAGTTAGACTAGGAATCCAGGGACTTCTGCTGCCACTA-AATAGATGCTGGGATTCCTATCATCTTCCCTTGGAGAGTTGGCTGTATTTGTGTGTTAAAGTTGAATTTCCTGTATAAGCTTTGGAATTCTGTCATA--TTAGACATG----------ATGTGTTATATAAATTGTATACTGGAAAAATAAATTAA
s HiC_scaffold_1 146121164 339 + 233722169 TCTAACCTGTTGCAAATCCGCAAGGGCTTCTAGACCCATGTGAGAGGAAAGAGGTTGAATAAGATTATTCTCAGTGAGCCAAAAGCATTGTACTTTAATTATAAATTTGCAGGTTAAATAAGCTAACACAAAGGAGGACAGGAAATTAAGACAGAGGCAGTTTTAGAAGCAAGGGATTTATGCTGTCTCTGCAACAGATGCTGGGTTTCCTGCCGTGGTCCCTCAGAGAGACGTGTGCATT----TTCTAACATCAGATTTTGTCAGTAAACTCAGGAATTCCAGTATATGTGAGTTATGGAAAAGTAACATGCTTTAAGTATATTGTA-----GACAAACAAATTAA

a score=31514
s chr3           158778469 1045 + 160039680 ATACAAATGGTATGAATCACACAGATAA-------TGTGAAAAAATGATTAATTTCTATTTTATGTAAATAATTGC-------------------TATGAT-GTTCTACAATGAACATTGACTATTTGTTTTTAGGACCTAACAACACACCCACTTTATAATTCCTCAAACCCTCTGTGCTCTTTGAAGTCACTGCTGTGGCTGTATCAGGTGACTATAACATCATG----------------TCTGACCCACAGGAACCTTTTAATGATGATATTGGCCCTTTGATTATAGTCAACC----------TTTCTTTAAATCTTAGAAGTAGTAA-TAAATACAACTGCTTAGTTATAAAACTACTTCCAGAAGACACTTGTATTCACCTGCTATTTATACTTGAATGAATTCATTTTGTTTTTTATTGAATTATTTCTATTCACAAAGTAGAATCTAGAAA-----CCTTGTTATGATATTTTGAGTTTCATTTGGCACCTGAGTTAATTGGCCAACAGTGACAGCAAAGTGTCTGTGCAGAGGGAACTAATATAAAACCAAGAATATAAAATCAAAGTGTCTGCTTAGGAAAGAAATGGTATCAAAACAGTATTCTAAATAACATACTCATGTAAAAGCAGCAGGAAGCT---AGTGGTCAGAGGCTGCCTGGAAACC-ACATTAATCACCATTCTATTTGAACCTTCAAGGGTCATGCTAGCTTGCCACATCAATA-TGTTCTAAATAGATGACATCTCTGCCAGGGAGCCTAGGAGATCAGATTATATCAGTGTCCTCACTGAAATAAAGAACACCCACAGCTCCCAGATGGGAGTCTTTCTTCCCTCATTTTAGAGAACTTTTTAAATTATATTGGCTGCAGAGTATTAATGATCTAAGTTTGTAGAGGCATTTTAAATAGAAACTTAAAGTCACTTGGAAAAGAG---TAGAATTTAAGCAAAACTTTCATTACAAAGAGTAATTCCTACAAGGTACAATCCTGAACCTCATAGGAAC---------------------AATGTATCCAGATTACCTATGAGGAATG-------TATGATAAGCAAAGTAGTGT-AAAGGCACTTAGGAAATAGGTAAGTTATAGCACATCTGACAA
s HiC_scaffold_1 146121910 1091 + 233722169 ATAAAAACAACCTGGGTTACACAGGTAAACTACTGTATTAGAAAAGGATTCATTTGCATGTCAAGTAAATTATTACCCAGTGGGTTTGCAAAACCTATCACAGGTCTAAAATGCAGGTTGAGAAACCATTTGGAGGGCTTAACAATGGAGCCACTTTGCCATGCTTCAGACCCTCTTTGCCCTCTGCAGTCTACATGGTGAGCATGACAAGTGCCCACTGCAATGTGGCTGACATTGGTTTTCTCTGACCCTGAGAACTTTTGTAATAATGATACCGGTCCTTTGAT----GTcttcccttaatttttttttttttgatcttgaaagtagaaaataaatacatctacTT--------------TTACAGGAGAAACTTGTGCTCACCTACTGTGTCT--TTCCATGaatg-gttttgttttctattgaATTCTGTCTATTTACTAAACATAATAGGAAAAGGCAACTGTGTTAtgatattttggttttc-tttgacATGTCAGTTAATTGGCCAGCAGGGATATCAAAGTGTTTGTGCAGTGGTAGCTAATATCAAATGCAGAATATAACATCAAAGGGTCTGCTTAGGCAAGAAATGTTAACAAAACAGTATTCAAAAC-ACAT---------CAACCAGTAGGAAGCTGCCAGCAGTTCGAGGCAGCCAGGAAACCTGCATTCATGGACGTCCAGTTTGAACCTTCAAGGG-CATGTCTGCTAATTACCTCCATCTTGTTCCAAGAAGATTGTTTCTTAGCCA-GAAGCCTAGAAAATCAGATTTGATTGGTCCCCCAACTAAAGCAGAGTGTACCCACAGA--------AGGAGTCTTCATTTCTTCACTGTTGAGAAATCTTTCAAGTTCATCAA-TGTGGAGAATTAATGAGCTAATTTTGCAGAAATATTTTCCATAGAGGTTTAGGGTTAATTGCAGAAGAAGCCTTGAATTCAAGCAGAATCCAC------AAGAATAATTTCCAAAAGATACAATCATGGCTTtcatataaatgtaaaatgaagATGTGTCCAAAATTTATTCAGCTCACTAATTAATAAAGGAACCAATATGATAATCAAAATGGTTCAAAAGGTATTTAAGACA-AGGTTAATTATAGGACATTTGATAA

a score=27032
s chr3           158785801 2665 + 160039680 TGATGGCACCTCTTCCTATAAGTTAGATTTGAATTGGAATATTACAACTTCTAATAGCCCCCAAAATTCCCAGGTGCCCATGAACCAATCAGACTCTGCCTTTTAAAATTTTTCCTTTAAATCCTGTGAACACATGACTTTCACGAAGAAAAATCTGGGGCCTATTTCTATGCAAAGACTGATGGACAGTTAGGTATTGTGGATATGATCAATTTAGAGATTTGTCTCAA---ATTATCAACCTTAGTCTAGAACTTCATGGGGATTGAACATGATAACAGACCTGAACTGATTTCCATCCTACTCAAAAGTATTTAGTAAGTTTTGTTCTCATGCTTTTGAAAGTAATACAAAAAGACATTATTTCTTCCTATATAAAAGTTCATgcctggcatggtggcacacgcctttaatcccagcacttggaaggcagaggcaggcagatttctgagttcgaggccggcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtcttgaaaaaaccaaaACCA------AACCAAACAAAACAAAACAAAAGTTTATTTTTGGTAGTCAATGACACAGGCAAAAAGAAACTGAGGGCTAAAATCTAATAAGTTAAAATGCTGGATA----CACATGAAATGattttttatttaaaaatatatattCATCATTTTCCTACATGAAACAATATTTGATGTCCCCAAAGAAGTTTACCTATCTCATTCTGAGGGTT---TTTGTGTGAG---ACTGTATA----------------------TTTGAAATATTTATCTGATATAGAAAGAATCAGGAAGAG---------------------AAGGAG---------GATATAAGGCA---------------CTGA-ATCTGTGATCTGCTTGTAA--TCAAGAAAAGAGCACCACAGGACTAAAATGACAATGGCCAT-TAATTAGAAATGTCAATTCCTGAAAATCATATGTTAAAAACATAAGGGTAGAAACCTATGTT---GGATAGCTGGG---TTAGTATGTAGAGAAGTTGAGTTTTGGTGAGTAACCAGT---TTGAGTGTA-----CTGAAACAGAAAGAAGGCTTTTAGCA-ATAATACAGAACATAT-----AGCTTTATTTTTTCCACATT--GTGCTTTTGAAAATGCTACACTAATCTGAGGAA------CTGTAGCAGG------AAGAATGATTTGATATACTTCACAGCTGATTTTCACAGTCATTGTTATTATGATAGCAATCAGAAGTGAAGGGGGAAAGTGT--------------------------------------TGTA-------------AATAATTGG----------TCACAGGCT------------------ATCAGGGAC-CAGCAA----------------GAAGAGTAAGCCA------------------TTAGTCCA----AGAGGTTCTGAG--------------------------------------------GAAACAGACAATGAT-AAGTGAGGTTATATGGTG-------------------TCAGCAAGACCATAAAA---------GGAATTGACAGAGGAGGTGAAGTCAGTGGACAGTTTCTGAATTGACTTAGCAGAAAGCCAGCCTAAGACT-GAGAGTGCATTCATTCATTTACATGAATTGACTACAGGTTCACACCCTGGA-----------GAAAGAGATACAAGCTGGAAACAAGCATTCTGGAAGGGGCTTATCACCACAGAAGCTCATCACTGATATTTTGAAATTATTAATTCTTTAAGTTACATAAGGGAATTACTATGAAACAATAAACATTAAGAAAATAAAAAAAGACTAAATTCAGAGATATAAAAATCTATCAACTTGATAAATTAAAATTGCACTTATAAGAAAATA-GAAAGTACATCTTTTCTCAGTTCCAATACACATT--TTTATGTGTATTATTCATTATTAGGATTGAACCAGAACCTGAAGATGCTACCCTTGTAAAAA-ATATGCTCTTCAAAGGTAAGTATTGTACATTAAATGTAATCAATAACAAAACAACCTCAAATACTTTTAACCTGACAGCTAAGTG---CATA-------TGCAGTAAGACAGCATCC------------TTAAGCTATGTGCAGAGGC---AAAATTTGACCTGAGTGACTGC----ACAATCATGGA--------AAATGTCCAATCAGGTCCG--GGCATGGAC--------ATCCTCCCTTACCTCTATAGCACTGTCCTTTCCTAAAGTTTA-TTAAGACTTGTGTGAATTGTTGAGGCAGCATTAATAGTG-ATAGGATTAATCTTT-TTTAATTCCCAAAGAGACTGAGAAAAACACTCAGTAAAACTATGAGAAATCCATTATAAGATCCTTGAGAATACGGTAAAAACAACAACAACACAGTTTTCTGGAGTAAAAGCCC-----AAGTGCTTGAATCTATTAAGTTGATTAAATGGAGGGAAA--TACTTAATGAAATAGTGGT-----CTTTGAGGGGATTAAATATTGGGAATTAAGGTTCATAAAATGAATTTTAATCC--TCAGGCTTGCACAGATTAATGACAAAA-----TGAACAAA----AAATATTTATTACACTGGCATGGCTA--CTTTCCTAACTGGGAAGTT-------AATAGGCTAACTAGAATAGGG--------------CCTAATTGGAAAGTGACACATTTTTACTGTTTACTGAATGATTTCTAAATTTCATGATTCTCCAATCAGACAAAGTGGGTATTTATTTTTAAGCTTTAAA-------------AAAAT-------AAGATGAGTGAAATGACACACACACTAATACTTTATAATTATAATTTTCAAATCCATAGTAAGAA------TGTATC------TTAGATGTCAAATTATGGAAATTCTGAAAGCCAAAACTTCAGGGAGTGCAGTAAAGGCAGGGAGAAATTAACACAGAAATGCATAT-TTTCATCTATATTATGATACACAG--ATAAAAATTAGTA-AAACAGAATAAATTTCAACCATCTTTAAAGAAG
s HiC_scaffold_1 146123676 2884 + 233722169 TGATTGATCTGCCTCCTCTGAGTTGGATTTGGCTTGGGATACTATGACTTCTAACAGCTCAAAAATTTTCTAACTTCCGGTGAGCCACCCAT-CACagctttttctaa-ttttcctgcAGGTCCTATGAGGTCATGAGTAGCACAGTGAGCGATCCAGGGACCAGTTACATCCAGAGACAGATTGGCAGCGACGTCTTGCGTAGCTGGTCAGTTTAGAGATCTGGCGAAAGACATTATTCATCTCAACCTTGAATCTCAATAGAATTGTACATGAAAATAGAGCTGACGTAATTT-CAT--------------TTTAGTAATCCCCTTTCTCATGCAATTGAAAGCACTGTGAGGCAGCATTATTTCTACCTTCAT-GGAGTTTAC--------CAATGGCACATGC-----------------------------------------------------------------------------------------------------------------AAAAAAATTGAGAGCATTTAACAAGTATATAATTCAAGACAATATGGTAT------CAGTCCATG---CCTGTATAAATAATCT-------------------GTTAGAATGCTATATATTGTTGTAAAAAgtgacttaat-tttaaaaatatgcattaacCATTCACCCCTGT---ACAGTGCTCTAGAACT----AGTAGTCT--CTAGCTTCTGCTGAGAATTAAGTTTGTTTGCGTTCACTgtacacaagagaaaaaaattaaacattttttaatttttccttttgaaaagtgaAAATCAGGCTGAGTGAGGCCAAACAGATACAGGAAAGGAGGGTGATCTTGACATAATGTGTGGTTGTAGACGTTTCTGATGTGTGTGACGTAAGCGTGATCTCCAGGCCGGTGCTACACCAGACT-GTGTGACTGAAGCCTTGCGCTTGGGAAC----AATCTTGAGAAGCAGA-GGTGAAGGCATAAA---ATGAATCCGTGCTTTGGTGCAGCTGGAGTTTTCCTCTGCTGGAAA---CAGTCCAGCAGGGTGTGCAGCATATTGAGTACAAATGTTTAAAAGAATGGGAGAATTAAAAGCATGTAATAGAGTAGCTTTGGGGAAGCCATCATGTTTGCATGTTAGAGAGACTTAAAAATATGGAATGAATCTTAGTAATTCTTGCTGTAGCAGTTACAGCAAGAATCATTCTTTGCTCTTCACAGCCAACCTTCACAAAGACGGTCACTGTGGTGGAGATCAGGATTCAAGGGGAGAACTGTTCGAGCCTGATGTGGACTTGGGCATGGTGGcctgcacctgtaatcccagcacagcaGGAGTTGGAGGGAGAGGATTACAAGATTTAACCCTGCCTTAGCAATTTAGGGacttagcgagatcctgtcttaaaatgagAAGTAAAGCAGGCTGGGGGATGGTGATTGTAGCTCAGCGCAAAGGCTTTGAGTTTAGTCActggtaacacacacacatgcgcgcacacacacacacacaactgacaGTGATCCAGAAAGGAAACATGCCGACTGGATGAGGAGAATGGCTCAG-AAGCCAACAAAAATAGAGGtgagaaataaaacaggacaCAAAACCAAAGAAGA---TCTGAATAGGCTTACGAATTGGTCAG--TGAGACCAGAGAATGAAGTCATTAAAC--CCTGTGCTGGCTGTAAAGTGAGACACTAGAAAAATTCTGTGGGAAGAGGAATAAACATGGCTGAAACATTTGTGAGAAGGCTCATCatagaaaatatgcatttttactCCTTT---ATCAGGGCTTTGCTAAGTTGATTAGGCAAATTGCTAC---------AGCATTAAAACCTTCATAGAAA--TGAATTAATAGGCATGAAATGCAGCAAATTTGACAAATTAAAATTACGtgtaaaagaaaataggaaaatataatttttctctcttctattaTACATTGCTTCACTCCTATTATCAAGTACTAG---TAACCTAGAAGTGAAATACACTGTACATATAGAACTATGTGCT-TTcaga---------tgcaaaataaaag-aatgaaaaagaaaa------gaaaaaagtctaatCCATTGGCTAAGTGTGTCATAACTACCCTAAAGGAAGATCAAGTCCaatgaaaaatgaatgagaaaagag-GGAGGCATGAAAATTTGATCTGAATGATAGCTATAAAAATCACTGATTACTCAGAGAAGCCCAATCATAGCTGACACCATGAACTGTGGCAAAGTTGCCCTTTTAAGTAcagaattttcatttcaaatcacTTATTTAAGATCCGTGAGAATTGTTAAGGCAACATTGATGATGAATgggattaatttttctttaattcccaGTGAGACCGAGGAGAGCATTCAACCGAGTTATGACATGGTCATTATTTGGTTTTCAAGCAT--GGTGAGAA-------ATAATGTTTTACTGCAGTGAAAGTCCTAATAAAATGCTTGAATCTATTACATTGACTAAATCGAGGAGGACTTGTTTAATGAATTTTTAGCTAGAGTTTTGAGGGGACTAAATATTGAGAATGAAGATTCACTTAATGAATTCTAATCTCACCaattatgcatatataaatgagaaaactatGTAAACAAATACCACTCATTTATTACCCTTGCATGGCCATCTTTTTCTGCCTAGAAATTCCAAATTAAACAGACCAACtagaaaagagaacaaacagTAGCATCTATTGGGATGATGAGAGATTCGTTTTGCCAATTATctatcttttaaatttcatgACTCTTCCATCAGATCAAACGAGTATCACTTTTAAAGCTTTAAAACAGGtacacaataaaatttaattcaagGAACATTAAATGACATAGACAGTTGCGCTTTATAATTATG---CACAAATTCACAATAAGAACACAGTTGTCTCAGCTGGTTAAATAGCACGTCATCAAACGAGTGAAGCCAAAATCTTCAGGAAGTTCATGGGAGATAACTATTAATCAGTGCAGAAATAGATCTCTTTTGTCCATGTTCAAGTGCACAGGTATAAATATAAGTAGAAACAGAAGCtatttgataagtttttaatGAAG

a score=19537
s chr3           158794067 934 + 160039680 ATATTTTTGGCACATTCATATTGGTATTTTTAATTTGGGAAGAAAAATGTCACACATAGGTATTAAACTGCTTCAGCAAATAATATCTGGCATTTGAAAATGGACAAGCTGCCAAGTAGGCTCTAAGAAGCTACTCATTAAAACATGGTGTATAAAG-AAACCACATTGATGTTTGATGGCTATAGTATA-AAGTTAACTATGCAGTTATATTAAATGTACCATGAATGTATTAATCTTTCTAAATTATATTTAATTGTTGGTCTCTGGTTTTCCTATTTGATGACCACTAATTGCAATCTCAATAAGAATTTGCATTGATGTTAAGGAACATACCAGAATA-ATGATTTCAAAAGAAAAAAAAAACATATTGAAAGTTGAAAGTCTTTCTGCTTTATTAATGATA--CAACACAACACTATTCCAGCATGATTCTA-TCCAGTACAGCTCTCATGGTTTATAT-GGAGAAGCTGCAAGCCAACATAAAGTCAGCTTCTGCCAAAACATCTGACAG-----------------------TCAGT--------GGAGTGTAGGTGCCTATGGGCTATACAGTAGAGATGATGAATCAGATGCTATCCCAGGCAA------CCAACACATTACCAGTCTTTGCAGCA-AGAAAGTCTTGCAAAAGATATGAGGCACAG-AATCAAGACC-CCAACATGATTGAAGAAACCT---CTCAAGTAGCCCTATACATGCTTACAGTTTAAGA-GCTCCTGCCTTACACAAGAGGGTGGAATGGGGTTCATGTTGAT--TCATAGAATTCTAC----AAAAATATTATATGGAAATAAAATA---AAAGCATGTTTATATCAAGAGATATATAGAGAGAAGTAGTCAAATAAACATCCATAACAACTGACAAGTGTTCTATAACAAGAATAATATTTAAAACTTAT--CATTGTGATTCAGCCACCAGGTACTTTCTAGACACTGGCTAAATAACTGAGTGAA
s HiC_scaffold_1 146131217 960 + 233722169 acattttt---aaattcatatcctttttctttatttggaaagaaaa-tattacatgtaCAGATTAAATTATGGGAGCAAATA---TCTGGCATTTGAACAAGGACAACCTGCCAATTGAGCTATAAGAAGTTCCTAACAAAAA---GGCACATAAAGAAAACCACGCTGATGTTTGATAGCGATAGTACATAAGTCAATTATGCAGTTATATCAAATGCACCCtgcatatattaatttttctaaattatatttaattgttGGTCT---GTTTTTCTGTTAAATTATTAGTAATTAAAAACTGGGTGAGTATTTACTGCAACGTTAAGAAAAGTACAAATGTGCCTTCTTTCAAAAG----AAGAAgtacagtgaaaatt-aaagaatTCCTTCTTCACTGGGTGCAGCCAGTAGAGTAATATTCCAGCACCTTCCTGTTCCCAAGTAGTCTACAGGCTTTGCACAGGAGAAGGTGAGAACCAGCCTAGGACCTGCTCTGGACGGCCCATGCGAAGGCACACTCGGATTTGCTTCACTGCTCAGTTGTTATTGGAATTTTAAGCACCTCTGGTTACTTAGAGAAACATATTTCCTCAGAAGTAAATCTGGGAGACTGAGTCCATCATCATATCATTCTTTCCAGAAGGGGAAGTTTCACACAGGGTATGAGTAAAAGTTGTCAAGATAGCAAATTTGAGTG--GATACCTTTCCTCCAGCATCTCCCATCTTGTTCACAACTCAAAACACTTCTGCCTTAGAC-AGCAGTTAAGAGGGAGTTCGTGATGACAGACCCAGTGTTTTCCAGGGAAAATTATTAtatgtgagcaaaataaacaaaacctagtCATACCAACTaata-------aaaagt------ttatattttcctAACACCTGG-AATTGTACttgcataa-aataatatttggagCTTAGAACAGAGTACTTCACGCATTAGGTACTCAGGAGATGCAGGTtgagcaaatgaatgaa

a score=7292
s chr3           158810271 296 + 160039680 AGTTATTACAAAAAGGAAATATACACA--GATAGAATTATACTTTGTC---TTCTCACTTCAATATGAGATGTATAGGACACATACATAATTT-GAAGAA---ATTCCTGTTGTGTTTGCATTTGAACTATGAAAAACTAAAAAGCA--AAGGCAAAT-TAGGCAGATTGCATGTTAGATGATCGATGTTCATTTCAATTCAATGAATAAAGAAGTAGACAAGGTCTTAATTTGGCAATGATATCTTCTAATAA-------------GGCATCCTATATCCCATTAAGCAGGAATAATAAAACTACATATTCTAGTTGTTT
s HiC_scaffold_1 146135969 316 + 233722169 agctatcccaaaaacacaaaccaaaaaatgTTAGAATCAGATTTTCTTGAATTTTCATCCACATTTGA----TACAgtaaatgtgaatatttttgaaGAGCATGTCTCCACAGTATTT-CACTTAAATTATAGAAAACTTGAAAACAGAAAGGCAACTGTAAATTGACTGTATGTTAAACAATCTATTTGCTTTTAAACTCAATGAATAAAGAGGTAGACATGATCTGAAACTAACAATGACACAGTCCAATAAATATGCCTACAAGGGCACCTCATATTCTACTAAGCAAGAACTGTAAAAGTGTCTTCCCTGGGTGTCT

a score=28189
s chr3           158864034 1316 + 160039680 TTTCTGTTTTCTGTTTCAAATGCAAGAATTATCCCTGGGTGGTT-TTTGTCATTTCCCTGCTTCTCCAAGAAAACAAGATTTCTTTCCATCCTTCAGAATT-ATTTTGCTTGTTGTGACCCTTCTGCGTTTTTCTCCTTTTAATATAAATCAGATAGCTAGCTGCGTGGCGGCTTGTTGTTGTCTA--CCACTGACAGGCTTTCTGTGTCACCACTGACACCTGGACTTTTTTGT----CTGAATTGTATCTCAGTGCAAATGTCTTTTG---TGGTGACAGGAGCATGCATTCCTGTGTTTGCAAATGGAATTAGGCTTGTGAAGTTGCATCAAAACAGATTCTGAACT-GTACTGGAAACAA---ACAGTTTATATaagagaa----cagaaatgtgaaggctcagagacttatgtttaaccccttggctcagtcatctgt-ggaaactgtactatttaattaacctt-tctaacttcagttttattacttatcaaatgacaac---aggctgcatttctctaagT--TTAGTATAAAAAAA--TCAAGCATAAGACA--CCAAACTTTTAACAACAGCATTTCACTAAAAGTGATAAATTATGTGAAGTGTAA-GAATATTTTAATTATTAAAATGTCTAAAGAGATTATTTATTGTCATCTAAATTTAACACTTA-CACGCAAGGTGTTTTAAT--------ATCTATTCATAGTAGGCAAACATGTAGCAATGTGGCATATCAAA---GACATCTATTTGACAGTAAATCTAGTCATTCTTCATTTGTGACTTCAGCTTTTGTTTAAAACGTAAT--AACATATGACCCACATCCACAAGCTTTATTCCATATCCAGTGCTA---TTCTGACATATCTGCAAATTCTGCAGTCACCCATTTTTTTTAGATATTTCTTATTCTAAAATCTTGCTTTT-----------ATCAGGGCCTGTGTTGTA---TCTCATTTCCAGTACCCCTCCTTTTTCTGATTTTCCT-----TTCATTCAGCCATCTGTGAATGCATTCATGGAATACCTTTTTG---AATGTTTAGAGTAACTGGGTTGTGTTACTTTGAAGTACT----------------------------------------AAATCTCTGCTTCTTTCTG---AGCCCCCAGAAATTTTTC--TTCATTGTTCCTGCTCTAACCAGAATTTTTACCATATCACTCACCCTTTCTTTTA--TCATACTGGCCATTCCTTCATCTTTTATTAGGAAAAAATTCCTGGCAATTTCC-------ATCACAGTTTTACCA------------------TTTTAAACCATGTGATTAGACTCCCACATTCTATGGCCAAGAGGTTTAATAATATATCTTTTGAAATATAGATTCTTTTTTA-TTAGACATAAATTGGATGTAAATTAT-CATAAACTTTCCCAAATA
s HiC_scaffold_1 146163882 1404 + 233722169 tttcacttctgtgTTTCAAATTCAGTGACT---TCTggctgattatttttaatttgcctgcttcacaaagaaaatgacatttcttTCCAACCTTCAGAATTTACCTCATTCTTTGTGAcccctttgttttcttta---------ataaatcaGATGGCTACATT-------ACTTGTTTTTGTCTCTCCCACTGT--GAATTTCTGCGTCACTGCTGACACCACGACTTTTTTAGGCTGCTGAATTGTTGTT--GTGCGaagatattttgcttttatgaCATGAACATGTATTCCTGGGTATGCAAATGAAATTAGACTTGCGAGGCTGAATCAGGGCTGATTCTGAAATAGTGAAAGAAATAATTCACA-TTTACATAATGAAACAGTCAGAGATTTGATGTCTCAGAGGTTTAAGCTGAATCCCTCATC-CTGTTGTTTGTGGGAAATTGCACCAGTTGATTAACCTTCTCGAACTTTAGTTTTAATACTTCT-AAGTGATAACTTTAGTTTTAATACCTCTAAGTGATAACTTTAAGATAATTTCACACATAAGACATGTCAGCAATTCAATAATGGCATTTCACAAAAACTAATAAACTATACAAAATGCAATGAATACATCAATTA-CAAAAAGCATAAGTAGATACTTTATTATCATCAGAACTTAATGCCTATTTTACAAGGTCTTGTAATTTAAAAGGACTTACTCATAATGGG-AGATATGCAGGCATGTGTAGGATTACAGCTGGCATCCAAACAACAGTAGCTATTCACATGGCTTAGCTGTAGCACCAGCTACTGCCTAAAATGCAATGCAGCAT-TGACCAGAATCCTCAAACT-------AGCTCTTGCACTATCTTTCCAGCTCACCTGAACACCCTGCAG--GCTCACCTCCGCCCCACGCCTC-TGTCCCAAGTTCCTGATTCTCTTGAGCAAGGACCAGGGCCTTTTCCCCAGGCTTCCTTCTCCCATCTCTGAATTCCCCCTGATTTTTCTTCATGTCCATCCAggcatgtgtg------tgcatgggtgGTTTTATTGACTAATGTTT--------TGAATTGTATTACTTTAAAGGACTGAGAATAATTTATAataggaaactcattttgttttttgtaaaatCCCCTTGGCTATCTGTCTAGCCAGCAGAAGTTTTCCCGTGCTGTGTTCTTCCTCAGACTTCGATTCCCACTGGGTGGCTGCTCTGTCCTTTCAAGGCACTCTTGTCATCACCTCCATTCCTATTAGCAAAAA---CTTGGTAACTTCTCAGGCAGAGCACACTTTCTCtgcatatatttaattatttcttttaaatcacaTGTTTAGAATTTCCTCTTCTGTATCCAAAAGGTTCACTGCTATATTTTCTAAAACACAGATAATTCTTTACTTAAACATAAAGTTGATGCcagtttcatatatatttttccaaata

a score=14100
s chr3           158866027 569 + 160039680 ATAACTAGGATATTGCCCTGCTGCCTCTGAAGAAGGAAGGAAAGAAGAGTGACTGAAGAGTCCCTCGGTCTGATACTCCATACTACCAGAAATTGGATGCACCATGGACAGTGA--GGTAGGGATCATTTCTATGTCAGAGCTATTCTGATTTCTTCTACACCATGGAAGAACAGTAGAAAGACTCTTTATATGTGAATCTTCATGTCATATCATTCTCTATTGCTGTGATACAAGTTTGGTTATCAATGTACTTTCCCCAAATTCCACACAAATGGCACTATGCAGTCATGTATTTCTTTTTTTCTGTAAATATTTAACCAGGGCCAGCACTGTGCCAATTTATGAGAATGTACTAGGAAGCAAGGCAAAAATAACTCCTGTATTCAAATCTGTTTTATCTCAGAAGCCAACTAAAATGGGGAGGGCC--TATTAGCTCA-CAATAGTGAGCAATAATAG----------AGTTGAGAACAGAGACCTTAATTCTCCACACTTTCTAATATCATGTACACTTCACCACTTAACTTCTTAACTTGTGTCTTACCTAACAAAGGGATAGATAATGGAATGATGAG
s HiC_scaffold_1 146168397 547 + 233722169 ATAACTCTAATATTATCCTGGTGCCACTGCATA--GAAGGAGAG--GGATGACTAATGGGTCCCTAGTGATGAAACTGCACA--GCCAGAAATAGGCTGCACAGGGGACAGGGGCTGGTGAGGGGC-----TGTGTCAGAGCGGTGCTACTTCCTTCTGCGCCAGGGAAAGACAGCAGAAGGATGGCTTATATTTGATTCCCCAGGTGATGTCATTGCTAGTTGCTGCCACACAAGTTT-----TTGAGAGATTTGCTGC----CCCAGACTAGTGATTCTATGCAGTCATTTATTCATT-----CTGCAAATATTGACTGAGTGCCAGCACTGTACCAGTTGCCAAGGATACGTGCACAAGCAAGGCAAACAGAATCCCTGCCTTTAAGGATGCTATGTCTCAGAAGACAAATAAAATGGGAAGGAGCGTTGCTAGAATACCAATAACAGACAGCACCGGCTGTGGGAGAAGTGGAGGCCAGGGACACTAATTCTC--TTCTTCCT--TGTCACTT--TCTTCGCC------CACCCTGGCTTACTTCCTTCCCAAAAAGGGAATGGTTGGCTGAGTGGGGAG

a score=61265
s chr3           158883221 4246 + 160039680 [encoded data, 4777 characters]
s HiC_scaffold_1 146180535 4227 + 233722169 [encoded data, 4777 characters]

a score=12293
s chr3           158889491 463 + 160039680 TCTTGCCTCAAATTTTTGTCTGTCTCTTAATTTTGTTATCTTTTATTTAGCTTGTTTTCCTACAAGAC--TGATTAAGATACTGCTCTGAAATTATGTGGTCACC-------------------TTCTTTCTCTCACTTTTGTTTGCATTTTGTTATTAAATGCTTTGGTTTCATTATGATTACTATCACATCTTCAGTCAATATAGCATTAAAAGTGCAACCAAGTATAGAAATAAAAGTCATTTTGAGATCGTTCTGAGAAATGAGCAAGGACCTCATTCAAACT-GGCAGAATTACCCAGGACTTCCACTACTTCTTGCCTAATG----------GTGATTTTAGTTCCATC----TTAACATTCTTTTCCTATAAGCAAATTCATAATTTATGCTGATCAATTTTGATGAAATAAATTTGAGAACATATAGTAAAAGTTACTGAAAGTGTG------ACTAAATCTTAA-TCTTTACTGTTCTTCAAACAATGGTGgtatta
s HiC_scaffold_1 146188795 494 + 233722169 TCTTTCCTAAGCTTTATGATTGTCTCCTAACTTTACtgtcttagattt----tattttcctgccaGATATTGAATAAGAACCTACCCCAAAATTATGAGGCAGTCAAGGATAAGTAGGGCTAATtgccctctctctcttttatgtTAATACTATTATTAACACCTTTTGTTTCATCATGCTGGCCATTACATCTTTGACCAATATGCCATTAGAAATGCAGCCAAAGATGGGGAT-AAAGCCACTGGGAGATGCTTCAGAAAACCCAGCAGGGATTTCCGTCAGATTGGGCAGCATTATACAGGGTTTCCTCCACTGCTTGGCTAATGAACCTGAGAAGCGATTTCTGCTTCACTGGCAGTGatattctt----tataaataaatttaagatt--tgTTGATTAATATCACTGGAATTAA-TGAAGTATATACACTAGGCTTTTACAAACATATGTTagcaaatatttcttaattttttattggtcTTCACCCAATAGGGATTTTA

a score=27340
s chr3           158891304 1333 + 160039680 ATTACTGAATTAATAAATTACTGACTAAATGACTTCT---TGTATTTTATCTTACATTTAAGACTAGTCCATAAGGAAGCAGT--CTTGTCTAATATTTCTCTTATCATATCATTTGCATATTATTTCTTTGACTAACTTAAGAAAGTTGAAtctgcctatctgtctgtctgtatgc-ttgtctgtcATTTTTCTTTCTTTATCACCCTGCTGTCATATTTACTTTGACTGGTACATTTGTCTTTTATTCTGGTGTTTTTATTTTTAAAATGTAATGTAGAAGTCCTAAAGTATCTATATACATATTTAGAAT------ATTCATTCTTTCTCATGAAAGCTAT--TTTTATATCATTTACTACCAAGCATGCTATCACTTGGGTAT--TTTGAAAGATATGA-----------CCTATTTATCAACCTGCTTACCATTAAGAACAACTTATCTGCTCTAATGGGAAATTGATATGATTCTATTTGTCTCTGTCAAACTTTCTGGCTTTTGAGAAATTAATTTCAGCTACTATCATATTATAGTCAGAAAACATAATGTCTTTCACTGTATTACATTATCTATTGATATAAATCCTATCAATTCTCTTGGTGAGTACTT------TGAATTATAATGGTGACTAACCT-ATGAATGTAGATAGTTAATAC--ATATTTTACTTTCAAACTTATGTACAGATTGTACCTAAATATATGGCTTGAATTTTCT--TTATTTTTGTTTATTCCTTAATCTGGGTCCAAAAATAAATCGGTTTACTATATAT-------TCTAAATTGTATATGAAACAAATATTGTGCACACTGGGAAATGCCTATTTGAATTTATAATGGATATCTATTCACATATATTGTCTTTATTTTCCTTTAATACTTCTTGTGA-ACCCATGTTGATATTTTATGTCTTT-TAAAAT--GTACATAAGGA-TTGCTGCCATATTTAACTTGTTAGTGA----TTACCTATCA----------------------------TCACCTTTCTTTCTGGTTAGTAGTCAGAACATTCTTAGATGAATCAGTGGGTTTGTTAGTAGCATCTCTCTTGTTATA-TAGTGTGCATATTCATGATTTGTGTAACTAGCACTATGTC-GTGAACTC--TTCCACTCTCTGCACAGG---------ACTTTAAAACTTTGAGATCTTTTGTGATATCCAG--AGATTAGTCTTTCCATGATTCGTTTTCAACCACAGTTTCTTATTTGAACAGTTTTCTTTTTCCTGACACCATTTGTTTTTGATGGGGAACTCATA-AAAAGTATATGAT-GGGTACCCTGGCTAAGCTTTACCCTTGCACTGTGTTCTGACCT-GGGGTTTTGCTTTTTTATTTTAGACACAGACTTTTTCTTAATGCTTTCTGGCTCtttttaaatt
s HiC_scaffold_1 146189938 1317 + 233722169 ATGACTACATCAGTGACAGACTGAAGAACAGTCTCCTCAGTGTGCTTTA-CTAGTTTCAAAAACTATTCCAAAATGAGCTATTTGCTTatctattatttctcttttaacat-------------tttctttg------------------------caTATTTATCCACTTGTATTccttgtctatttgtcttctgaAGTTATCACAATGCTTC---ATTTACTTTTAGGGGTTTGTATACCTTTTATTCCAGtttcttcacttttaaaattctatgcaAGACTCCCATAATTTCTGCATACAGATTTAGAATTTGGGGATTTATCTCTTCTCCCAAGATCTCTCCTTTTATATTACTCACTCCCAAG--TGTTACCACTTTTGCATAGTTTGAGAGAAAAGAGAGCCTGCTCTCCTATTTATCAGTGTGCTTACAAT-AAGAACAATTTATCTGCTCTAATGGGAATTCGATCTACCTCCATTTATTTCTGTCAAATTTTCTAGCttttgagaaattaattttaaccACTATCATATTATGGTCAGAAAACACAATGTCGCTCACTTCATTACAATACCTATTTATATGAACCTTATCAATGC-CCTGCTGATTACTTCATCGCTTTGTTACCAC--TGACCAACTTCATGAGCTCAGACTTTCAAATCCAAAATTCTGCAGTCATATTCCTATTGAAATCACACCTGAATATAC------AATTAACTGATCATTTT---------CTAACCCTATGCCTAGAAATAGATCCATTTACTACACATTTCATGATCTAAATTGTACATAGAACAAGGGCTCTACTCCAGGGCACATTCTTCTCTGCATCTATAAGGAGTAGCCTTTC-CACACTTAATCTTTATTCTCTCTTAATTATAGCTGTGGTTTTTGTCTTAACATTTTATGCCTTTctaaaacaaagacataaaaagtCAGTCCTCTCTTCAGTTTGACAATGAGCTCTTGCCCTTCATTTCATGGCCTCCTTGTTGTCACACGcctcctctttccctgtggctAATAATTCGAATGTTTCTGTGTGAAACA----GTTTGTTGGGAGctacatttttattacatttgtgtG------AGTGACTCACATAACT-----CAGGTCTGCTAACTCTTTTCCATTCTCTGAACAGTCCTCAGGCCACTCGAATACAGTAAGA-------TGGTCACAAGGCAGAGGAGTC------CAGTCTGATTGCCACCACAGTCTCTTAc----gaaattttgttttt---------agtcttgTTTGTTTAGGAAGTGTTAGAGAGGGGTCTGGTAGGATGCTCTGGCC-AGCTGTACCCTTAAACTGGAGCTTGGCCCAAGGGTTCTGTTTCATTAGTCTGTAAACACACTT-----------TTACTGGCACTTTCTGAATT

a score=22625
s chr3           158902980 1431 + 160039680 TATGAAGAGAAAGAAGCATGATAACATGAA--ATGTCACAAGATAGTGACTTACAACATCTTCCCTTATTAACTACATTTCCACTGTGTTTATGGGGC-ATTGTCATCTTGCTGGATCAAATGACACATAATGTACCATCAAGAATAACAGCTGAAACCTAATGTGTCATTTGGAAACTTCAAATCTGATCT-CAAAATGCAAAGGACATTTGATTACAAACCAAGGACAGGGTCACCTTTGCCCTCCTCTATGAGCAGGTAGCTATTGCATTTTCTAACTAATGGTACAAGATG----TGTCTTTAGATAAAATTGCCTGTTGGTAGCATCACCCTCATTATATAATCTAGGCTGAGTTGATGTAAAGGGTGTAATTAAGCATTCCTACAAACTTTGTCTGTGCCT-CTGTGGCAAAACAAATGCTCATCCCTTAGCTTTCTTTTCTTTGAATTATTAGAACACAGTTGGATGAAATTTCTGCTTGATGTATGCAATGTTGTTGTTAGGATTTGGATATTATAAACCTCTTATTGGGAGaat-tttaatgttatttatataacaatgattattatatatttaaCTAT-AAGTGTTTTAGCTCTTATCCTGTATTATT----TACTTTTAAAATGTAGAGTCTTATATTT-------------------------------------------------------------GTTAAATG-------TTATACTAGTAAGATAA------------TACATATCATATTTATATGACATTT-------ATATATTAATACTTATACTTTTCAATGTAGGTGTATGCTTTATATACGTAGATGAAAGAAGAGACACATGATAGAGCCTCAATA-----ATGTTATTTTCAACAAAATAAGCAAGAAGATAATAAACAATACGTATAATTTTTA---ATATAGAAACACAAATATAAATAAGCTCTCGTCTTAACATCTGAGAAATATTTATGTAGT-----ATCTTAATAACAAAGATAATCTATTTTAAAA--------TATTTCCC--AAAAAAAGGTAGATGACTATTCTTAGCTGGGATCTGTTATAATTGTTAGCCTCTATACATAGCTATCCTCAGGAAT-----------CAGCAGCTTGGCTAACAAGGTAAGGAAAAGGGATAAAGAATATAGGAA-TGGCTCTATGATGGTACACCTGGTCAGCAAGATGGCC----CTGGGGATCAAGAAGACAGAAGGAAAACCAAATGTGTTCCAAGAGGAGGTATTAATGGTAAGCAACTGCTGGGACACAGTGGGAAG-TGGTGTCCCAGGAAGGAAGCCTTACTCCTCACAATCTCTTGACAGGAAATTATGGAGAACA------GCTGCTAGTGGGAGCCTTATGGTGTTCACAGC----------------TTCCAGGATGGATGATTATCCAATCAGGCAAACAGAAAAGGCAAAGAAAGAAAGGAATACACTTTTCATCTCGAAATAAAAACCATAGAAAGCAGCAGGAGGTAGGAACCTGACAA--CATAGATCCATAAGCCACTGGGCTTG--CCTGAGACCAT----TCACAACACACTGGG
s HiC_scaffold_1 146194889 1573 + 233722169 tgtgtaaagacgGAACAATTTCACCAGGAAGCATGTTATTAAATAATGGCTTGCA-CATCTGCCCTCATTAGCTCCATCTCCATTGTGTTTGCAGAACTGCCCTTCTCTTGCCAGATGGAATGATACATAATGTACCATCCAACATAACGACTGAAGCCTAAGCTGTCCTTCGAAAACTTCCAATCTGATTTTCAGAATGCAGTGGGCACAT-ATTACTGGAAAATGGAAAGGCCATTTTTACCCTC-TCTATAAGTAGGTAGCTGTGGCACCTCCTGGGTAGTAGGATAAGAGAATATTATTTTTGGATGAAACTGTCTGCAGGGAACATCATTTCCATTATGTAATCTGGACTGAGCTGAGGCAAAGGGTATAATTAAGCGTTGTTACAAATTTTGTCGGTTCTTCCTGTGGCAAAGAAAAT-CTGGTCCCTTTGcctctttttctttgaattactGAAACATTGCTGGCTGAGCTTTATGTTTCTTGAGTAGCACAGTGCAGTTGGGCTTTTGATGTTGTTGTCCTTTAATttgtagaatatttaaaatggttTTTTGAAAGGTTGTTGCTGCATATTCAGATGTGAAATGCTTATGGTCATCTGCTTTTCCACTATGAAGTTTTTAAAttgaagattcttttttttttaatttttttttgtctttttgtttttatcggtaccagggatcgaactcacgactgcctgctttcaatgcaggtgcttatgcggctgagctaaatccccagcccctaaattgaAGATTC---TAACATGTATTAGAAATATATT-ATACCCATCACATCCATTATA--TCTATGTTCAATATAAATATGTATCATGTGTTTCTCTGtatgtgatatttatatttccatgttcttttcaacaaaataagcaa-aagacaacaaataataagtagaatttttatttaaatgtgaacATTGTTATAAACATTCCCAGATCTTCAAATCAGAACAATGTCCAACTAGCTGCAAATATGGAAAAGATAGACATGGCAACTAAAAAGCAGGAAGTTTTCCCCGTGGATAGAGACCAATGACCTGACTACACTGGTCTCGCTGCCCAGT----GCATCCATGCCTTGGTG---CTGGGGATGTGAGTAGACACAGTAACCTAGCACAGAAGCAGCAGACAGGGCTGGCTGTGTGCAGCAGCTGGGACTGTGAGGTCGGGTTTGGCTGACGTCATTTCCTGTGCAAGGGATCCAGGTGGCAGGAAGAATGTCCACTCTGACTAGCGAGGCAGTGCACGTGGTGGGTACCTGGCAGCGTGCAGTGGGAGGTTGGTG-----AGCATGGTGCCGTGTCTCTCATGGGAGATCCAGGTGATGCTACAGTGAAGAAAGCACACAgccagtggggg----aggggagacaCAGCATGGAGGGCATTTTGGTTCCAGGGAGGATCATGGTCCTGCTGTGCACATGGAGTGGTCAGAGAAGACAAGGAACTTGCTTTTTTCTGTGCAAAAAAATCTAC---AAGGTGCAGGAATTGGGGAACAGAGGATCCTGTGACCCAGGAGCTACCAGTCTCAACCCAGAGACCCTGCGCCCACTGCACACTTGG

a score=30273
s chr3           158909231 3179 + 160039680 TACCTCTGGGACAAGAACT---AGGTTCTTTGAAAAGGCAGAGACAAGAAAAGACAAATCAGACTGAAGTATGCAAGATTGGGGTCTGGGCTGTGG----GACAAGAAATGAGGT----CTTTCCAGGGAAACTGGGATTATGGCATTGGAAACCAACATCTTTGTTGGGGTTGAGTACATACTAAGATCTAGTGGTAA-ATTTCCTAATCTGTGCCCCTCTGTCTCTGAAGCT-TTGTACCCTTTTAAGAG---CACTGATTGGAATCTTGAACTTGAATCTTC---------TTTGGGAGGAGGAATTGAACCATACCCAAACTATTTCTTTA---TTATAAAAAGAACAATTTTACCACAAC----------------ATGGGTTAtttatctttt----gagacatgagatcatgtc-----------------------------------------------accgaggctggcttcaaactcagtatataatt---aaaggataaccttt-------gcctcttgatcctccttcttccaccttgccagtgctagggcaacctgtgtgaaacattatatctgttttGGAGGCTCAAGTT--TTAAATCCTGATACCACATAAAGCACATGG----AGGCCTTTTTATGGGAA-----------------AAATTTCA------GTATATTAAAATGTAAAAGCTCCAATGGAAAGACACTTTTGCATTTCATTTTTGTTGTTCAATGTTCCCTATGAAATGGTAAGTTACCCTTAATTTTAAATGGCTAAACATGCAAGGGCACA--------CTGGCTTTCAGGATTAGACA---CAGCTTTA-CTTCCT--TTTTTACTACTTTTAGAATGTTCACAGTGGTCACTTGGCAGCAGGTGTCATCTAAATA----------GGTTTCAATATGACAGGAAGACAAAATTTACA------------AAAAAAAAATGTAATAAACTGTAAGTCTCAAGTTCTATCACTCCACACAGTTTCTGGCTATGGGATCTTCAATAGAGATTCTGACAA-----------CCATTGACTAAATAGGACTGGAATGCAGAAGAA---------ACCAAACTAT--GATCTGTCTAAGTGGAGTGAACCTTTACTGCTCTTGAATTTGAGAAATCTACATG--TGTTAACACCAGACAATT-------CTGT---CTTTACAAATATGTTCTATTTCAAAAAGATGAAAAAAAAATCACAGGAAGTGGGATTAAAAGGTTGTGGGACTCTCAATTTCAGGGACAAACTACAAGGT-----------------TTGCTAATCAGAGGATTGATGTAAGTAATCCTCTGATTAG-CAAACTTTCCAG-------------GTTATTCAAACCCTAATGATAGGTAAAGAATG--GACAATG--------------GAAAGACTGCATAGAGTCCTATGAAGACTACATGTAAGT---------AATCCAAAATGCTATTTGGATCATAGAGTGGGAGAAAAATCATGAAGAGTTTGTGGTTTGAGAGAGATTCCAACAAGAATATAAAATTTTGGAAAAGATGCGGAAAGGCTTCAAGTATATCTAAAAGTGGTGTGGAACAGATTGTCTTT--ACTGACTGCAAACTGGATGATGTTCTGAC---ATAAAATAGTACTGTGTGCATGTG------CATTTGTTCGTGGCTTGAATAGTGACTGGTTTATGGATGATTTTGGTATGTTAGCTTATGGCATAA--------AACT------------GTGTTATAGTCGGAAGGTTACCAAT---------GCATTCATATTGCCTGAACCCACATCTCAGTTAGTTGTG---TGGCATTGTG----CAATTCTAACG---------CATCATTTTGTAAAATGAAGGACACAATGGGGCCCATTTCTTATAGTGATTATAGAGGTGAAAACAATGTTTAGTCCAGTGATTGAAACACATATGGGAAAGCAAATGT--GTTTGCTTTCATTTCTCTAGTGTTGTTTCTATGATTTACTTTTATAGTTTCTGCAACATGTAAGGCATACT-----TATTCAATACTTGCAAAATAGTTGTGTAACAAAGGGAGGCAACTTCCTGCTCCTGGAGCTGTAGAGAGCCTTAATAGTATAGCCTTGGGTCTGAGTAGAGTTCAGTGTCCCGAGGATACTCACACACACACAATCTCAGCAAGCATCATAGAATGACATTATTTTCCAGAAACAGTCCACAGGACCTGCTCTAAAATAGGAATTAAGCTTTAGTTCATTGTGACATGGCTGTCTATGCTGAGGGCTGTGGCAAAGTGCAATCAGGTGGCATTTATCTCAGTCCTATT-------ATCTGGACTATGGCATTGTGTCACTGTGCCTTTCTTGCACTCTGATCTAGGATTAAGTGTAAGTCTTTATTGTGTCTGATAGAAGCATACTTGT----GTATACACAAATGTTTCCCTTGTGACTGGAATATT-AAACATCTTGGTGATTGattaaattatatattttaatatCAgagatggaagtgtagctcaatagtagagtccttgtctgtcatgaccgaagcactgggttgtatgaccaacataagacaaaacaaaacaaaacaacaacaacaataaaatccaggctgagtagagcacCAGAGATC---TCTTGATACATCTTAGATAACAGTATTTAGCATGTACCAATCACTGTGTCAAATGATTTCTGCATTTCATTTCATTCATCCCCTTTAACCCATTTTTTTCTTT----ATCTCATAGAAGTTGAAATTAAGGTTTCATGGT-----------AGAGTTAGAATTACAACGCAGACAGATGGGACTGTAGGAAGTTTAAAGCTAGTGACACTGCTAGAATGCCCACTGTGAAA---ATGAATTGCTTTCTGTTAGGATTATAATATATATTCCCACCAAAATATTTAGTCTCTCTTCCTTTAGGATCAGCACACATGTATGGTAT-ACATAATACATATGCAATTGCTGTCTTTTATGAATGAGACTTGCAA-ACTGAAAACAATCCTAGGATTCAGTCATAGTTTGA--ATAGCCAATCTAAGTTGAACAATGTTTTCATACAAAAGCTGTCATTTATATTGACTGCTAGGATAGCCTGCTGTACATCTGTATGTGATTTATATCTTGATTTATTCCATGTGGCTATTAAACACCTTCTTCATATTTAGACCTTGATGATTTTTCAAAAATTCACATATAGTCCCAAGAATAAGAGAGAATATTAATAACATCAACAAAAAATAATGAAGATTTTTACCTACAGT--------TATTATTCACTGGGTTAAGA-ATACA-------CTAAGTATTTTGTATGTTGCAATATTTA--GGACGTCACTGGAGCTTA-------TGGATAAGGAATGCAGCATGCAT-GAGATTAAACAAGTTTATATAAACAAGTCTATACAGGCAGTAGATGATAGAGTAAAGTTTCAATTTTAAGAAGGACTCCATTCAAAACCTCTATA
s HiC_scaffold_1 146204130 3282 + 233722169 TGCATCTGAGATAAGCacctaaattttttttgaaaaggcA----------CAGATAATTCAGACCCAAGTTTGCAAGATGAGG--CTGGGTTAGGGTGTGGACAAAAAA-AAGGTGACACTTTCCTGGAAAACCAGAAGCACAGTGCAGGGAATGAG-AGCCTTCTTGGGGCTAGGAGCAGGCTGAGAGCCAGTAGGAATAtgatcttcttttcctctctctggctTTGGATCCCTTGTATCcttttaagaggaaaaatgttTGCAATCATGAATGAAAACTTACAAGGCAGAAGCAGGGAGGAAGATtgg---------caaaataattttctaactTAATAGAGAGAATGATTTT-TCACAATGCAAGAGCCATTGGCAAtggtctcctttttttttctaataaggATGAGATTCTGCAGGTTCAGGTTCTGAAGCCTAATGACACGTGGGAGaacagagtgagagacagagactggcACTGAAATTAGGAGACCATTTTTAAAGGTTCAGTGTTCTAAATCACACAGTGTTCCTGTTCCCTTCCCCGGGT---TGATAAGCTCTCCCTCATCAGCCGTGAGAACTGAG--AGAGGTGAAAGTCCCTTGAAAACTGGTG--AAATAATTGCCATGGCAAAACAGCCCTGCCTGGAAATGTCCTCCACCACAAATAAATTTCGTTCAGTATatgttaaaagttaaaaactcACCCTCAAAGAAactgc-acattttatttttgctccTCATTTTCTCTCATGAAACATTAAGCTCCCTTTTGCCATAAATGTTCAAATATACAACCAGACAGTGAGGACCTGGCTTCCGGGATAAGTCCGTTCATCTCCATCTTTCTGCTGTTCATTCCTTGTAGACTGTTCAAAGAGATCGCTGGTCAGCAGGTGCCATATAAATAAAACTCTGCAGCTTCCAAGATGACAAACACGCAAAATGAACAGTGAAACACTGCAAAGAGAAATGTGAC------TAAGCCTCAAATGTTACCACTCCCTGCAGTCTCTAGCTGTAAGATCTTCGGTATTGGCTGTGACAGATGCGCACCCGCGATTGTACAATCAGGACTTATATCCCAGAAAACAGGCTGATGCCAAACTCTCTGATCTGTGAAAGTAGACTGAGTCTT----GCTTTTAAATTCGGGAATTTTCCAGGCTTGCAGACACCAGCCACTTTGTGCTCCTGTTTCCTttacaaatatatt--atttcaaaaagatGCAAAA----TCCTGGGAAACATAATTGAAGAGGTGT----CTTCAAATATGATGGAAAGGGTGTGGAGTGTAAGGGCAACCAACCCTTGGTTACCAGAGAAA----ATCACTAGTTCTTTGCTCAGACCATGGTTCCAATGGAACAGAATATGTTAGCCAGACACTGATGGAAG---AAGAACGTAGGCAGTGTGTTTTCGCTGTTAAGGATAGTGCA-ATAGTCCCAACAGGACAGAAAGTAGGTTTGTTCAGGAATTCAA----TTGATTATACCTTAGAttggaaaaacaaatataaag----cGCAACTGTAAAGAGTCTATCACCAAAATAG--------GGACAAGAAAATGAAAGGCTTCCAACTTATTTTAGAGGGGC------CAGTCTGCACTGGAACTGTTTTGTATGTGGGCAATGCTTTGACCTTACAGTACAGAACAGCTTTGACGTAGCAACATGTCTGTCCAGGGCTTGGACAACTGCTGGTTTTAGAATTTGTTAGTGGTGCTGGGCTGTAGCTTAGTGGTCAGGAACTTATGAAAAGGAAGTGCTGCAGCTTAAAGGTCCACAATCTACTCTCTGGAGTCATATTACCTGACCCCA-ATCTCAGTGAGATGTGACTTAGAGTAGTAATTTCATTTCTTGTATCTCAGTGTCATCATCTACAAAACTAATTGAAATAATAATGTCTGTTTCTCACCGCCTTTATGGGATTAAAAAGCGTGTTTAGATCATTGCTTGGAACAAATATGGAAAAGCAAACgtatgctggctttc------------------------ctgattgTTCCATCTTCTCCAGAAAGTAACGCACACCAACTACATTAAATGCCTACAATGTGTGAGTATA-CAGAGTGAG-TGGTAGCACACGTCTACAGCACTAGA----TTTACAGGCAGGGTCTCAGCACTG---------------CCCTGGActactctccc---------------------------------ttcccttccagaGTCTGCTGACAGAACCTGC-CAAAGGAGGAAATGAAGCTCAGCTCCACGGTGGCATGGCCAGCGAAGCCGGGGGCTGTGTCAAAGTGAGGTCAGCTGGTGTTCAGCTCAGTGCTTCCCAACTCAGCTTGAACCCTGACATTGTGCC----------TCCCACACAGCGAGTTGAGATTCGCTGCAAACCCTCGCACGGTGTGGATGAAATGTGAGTGTCGCCATATAC---AACATTTGCCTGAAGACTGAACTATTCAGACATTTT--TAATGGATCTAACTGT----------------------------GCCGTatagtga---------------------------taatttttaaaaacagaatcagGCATCACACATCAAGAGAGCACCTACATT--------TGCTGACTTTCTCCTTGGTTATCAAATCTGTATGCTTC----------GAATGAGCTGTGCCTCGAATACTGCACTAGATACTTTCTGCGTATGTCCTCATTTTGTGCTAACaacttttttgtgtcttttcccATTTTATTGCCACTACAGCTAAGGTTTTATGGCTTGTAATATGGGAAACTAAGATTGCAACCC--ACAGCT-GGCCTCTGCAAAGTTTCAAGCTAGTCGCACTACCGGAATACCCATGGTGAGATGGATGAATTGTTTCCTCGTAGGGTCCTAATTCAGAGTGGTACTAAGATCCCTCAGCATTCTCCTCATTGGGTCAGCACACACGTACAATACGGTGCACTACGTTAGCATACACCAGTCTGCATTTGTTACCTTTGCGCTACTGAAGACAAACACAGTA-CCAGTATGGCTTTCATCATAGC--ATGTGAG--GAGAAAGCTCCCCACCTGAAAAGGTTCCTTTGCACCAGTTACTAGCATTGACTACTATCTGTGGCTAAGTCATTCACATACAAATTCCTTTCCTATG-------------TTCTTCATTTTATGAGTCTCATGATTTCTTAAAACTTCACACATAGTCCTCAGGATGAACAAAAATATCCATGGCAACAGC-AATGATAGTGAAGGTTCCTAACAACTCTGTCACCAGTACTATTTCCTGATGTAATATATGCAGTATTACCTAAGCACTCTATAT-----AACACTTAATAAAGATCCTTCCCATTTAACAGATGCAGAGAAGGAAACCAAGCTTCATCGAGGTTAAATA-----ATATGTTGGAGACCATATTGGCTGT-GAGGATTGAGTCAGCTTTCTACTGCAAAGAGAGTGCAATCCAAAACTTATACA

a score=34363
s chr3           158914705 1066 + 160039680 TTTTTGTTTGCTATTTCTTATTAAGGGAAACTGAAGAAAAAGAACAAGAAAACAAAAAAACAAAAATTAAAA-ACAGATATGTACAAACACAAACAAGAATCACATTCTCCCAATGACTTTGTAGTATGCCAGGGCTTTTCTTTAACAGTTATGTTGAGAGAGGCTCAGAATACTCTCAGTTTCCAGGTCCATCCACTCACTGCTCAGCAGCGACAGGTCCGATTTCAAGAATCTGTTCCTGGTCTTC---TGTGTCTGAATAAGCAGCATTGAAAGCCCATAAATGCATTTTCATTCTCTAGAGAAGGTAGCCCTCTGCTAGGATTCCACCCTCTGTTAGTTTGTATCCACCTTGTGCTCTGCATGAAAAGTTCAATATTTG-AAGAGAACAAGCAGAGTATTTATGAAACTGTAGGAATGAGTGTTTCATTTGGAAGTGCTAACTGTGCCTTCCATGAACTTCTTTTAGAGGCATCTCCATGGGAAGCCAGTATAAATGC-ACCTATTATTTCTGTGAGTTGAGCTCCTAATTTACATCTGCTTTCCATTGGATAACTCTAGGAAATGAAGATCACAAAGTTTAAAAAGAAGAATACCTGTTTAATGTCCCAT-GCAGTCGGATTTTGTGTTTG-TGCTTGCTCACAGCCAAAGCCTGA--GGCAAGAAACAGAATGAGCAATTTAGCCAATCATTGGTTGTCTGAGTCCATTATGCAAATAGAAA-TAAAGCC-CTCTATTAGTGTAAGAAAATAAGGCCTTCTCTACAGCCTTTCCTTGTTC--AGATAGACTTATTTTAATGCCTGTCCTATAAAATAGGCTCCTTAAGGCAATCTGTAAAATTTAAGAAAGGAAGCCTGTTTTAAAGTTATT-GACAAATAGAAATCTAGTGTTAAGGGTGTCATACAA-----------AAATCTTGGTTGGATATAACAAATACCATTTTAAAGGTTTAGAGTATAAAGGATCCTGGGACGTTTATAGATATTAATTGGTAACTGACCTCTTCAGTC-------TCAGCCCCCACTAAATTCCTCAAAGATCAGA---CTGTTTGAATATGATTTGTTTGAATCCTTGTAACAA
s HiC_scaffold_1 146216345 1069 + 233722169 TTTGAGTTCCTTTTCTCCTAAAATGCAGAGCGAAAGATAATGAacaa---ctcaaacaaacaaaaataaacacacagataCAGACACACAAAAACCAGACT----TCCTCCTAATGACTCTCTAGGAAGCTGGAGATATT--TTGCCAATTATGTTGAGCAAGGGCCAGAAACCTATCTGCCTCCTGGCCCTTTAGCTCGCTAGTCAGCAGGTGCAAGTCAGATTAGATAAATCTGTTCTTCTCCCTCCAATATGTCCaagaaagaagcaggaaaa---cACATACGCATTGTAA-------AGAAAGGCAGCTTTCC------ATTTTGCCCTGTTTGGGCCTACGCTCACCTTGTATTCAACACAGAAAGGtcaatatttggaagaaaataagaaagatattTATGACACTGTAGAAGCACACATTTCATTTGGAAGGACTGGCTGGGCCTTT----AACACTTTTTCAAGGTGTCTCCGTAGGAAGCCAGTGTAAAGGCTACCTATTATTTTTGTGAACTGAGCTCTTAATTTGCATCTGTTTCCTATTGTATAACTCCAGGAAATTGAGATCACAAACTTTGAAGAGGAGAATACTTGCTTAATGTTCCATGGAAGTCAGACTTCGTGTGTGATGCTTGCTCACAGCCAAAGCCTCACTGGCAAGAGATAGAGTGAGCAATTTAACCAATCATTGACTGCATGAGTCCATTATGCAAATGGAAAGTAAGGCCACTCTGTCAAGGAGGGAAAATAAAGTCTTACTCTGAGAAGTTCATCATTTAAagagagacttttaaaaatgtccctcagacaaaatgGGTCCCTTAAAGCCATAGATAATAATTAAGACGGGAAGTCTTTGGGGGAATCATCAGCCTGGTACAAATGTAGCATGAGGGGTGTGGCATAGCTCctccttgtgtttctttgttGTGTACAATGAACAGAA-ATGGAAGCTTTAAAGTGTAATGCATTGTGCAATGTT--TAGACATTTATTGGAAGCTGACTTTGCTTGTTTCAGAAGTCAGCCTTCACTCAATGCCTCACATTTCAAATGCCTGTGT-ACTGTGTCTGCTTTGGCTCTCCATGACAA

a score=29859
s chr3           158933665 1787 + 160039680 TCCAGAAATTCAGTAGGCATCTTGGATCATATTCTCCATGAACT-TGAAAAAC-----------------------TGATGCTCCTAGTTCTGGAGGAGAGCAATTGTCATGGA-------TCCATTCCTCTACAATGAAATGTCTAGCTTCTTCAGGAATCTATGTGACTAAATCTATGACTACTTTCTAAACATAATGTTCTAGG------AGGTGTTTCTGTTCCTCTTTAATAGCACAGGCTCCATTTTCACAACACATCAATTGGACAAAGAAAAATTCCATTTTGAAATTAATTCAACACACTTTAAAGCTCTTCTGTGGGCTTCAGAAAAATGTCTAAGATATATAATCATATGCCATGACCAAAAAACCTGAGTAATTTGTCTCCAGTAGACAGTCCTATTAATTTGTTCAATTCAGCTCATTTTAGTGTGACTTCCTATAAGTTGCAGTATTATCTTAACAGAGAACCAAAGAGAGGCAGGTTATTTCCTTTGAGAAAGTTTTATTTT----TAAGTATATATTTCTATATTGAAAAAAATCCACGAATGCACTAATTGTGGCTTTACTCTCTCACCTTCATCAAATAAATCATACCTTGCAGTCACAGACTCCATGTTTCAA------------AAGTGATTGGA---------------TCAGTGATCCAGGGAAAACCAATTTCCATTCCACACTGAAAGAATTCAAAACAAAACAAAGCAATGCCTGGCTATTTAGAATCAGAACTATCATAACTGTGCTCTTTTGGAAAAGCCATGGGTCGATGAATCCAAAATTATAATCACACAGAAATAAATAAGGAAATCTTCACCAGAATGAAG---AAAATTAAACATCCAAGATGATTAGTCAAAATTT---TTCTCTATTGCTGACTC--AATTCTTTCTCCCA----------TTAATGAATAAG---TTATAGTTAACAGCTTTTATTCATGTATGATAATGTTTTTCTCCCTTGCTTCTTTGAAAATGGGTCTAATTCAATTGACCTGCATAAGAGAAAGAATAAATAAGAAGATGGCAAGTTCTTGTAAGTAATGAGTCAAAGTAGTGTGTAATCAAGAAGTATTAGGTTTTGGAG--------------TTTCTAAAACTT--------------------ACCTGAAAACCTAGAACTTCTTTTTGGGCAACAGAAGAT------------TCTACAGGCTATTATAATAGTTAAAGTGGCTGATTTGTGTGAAAATGCTTGAAGTTTTAATTCTATGA------------ATTCATTCAGCA-----ATATACTGGATAATTTTAT-------------------------AAGCTCTGG---AAAT--------ACAAGCA-----TAAGAACTAGATGAGATTTATTTCCGTGA------GTTTAGTA------AGAAAGATTTCAAATAGTTTAGGATAAATTTTTTATTCATGTTTAAAATGACCTTCCCTTTTGAGGGGGA-AGGCATTTATTTGATCAGAGTTCATTTAGCAAAGGTTTT---------------TTTTTGTCCTGTTCAGAAGAGTCATGAAGCTTAGATGATAGGATGGAATGACCCTAAGAGT--------TGTCTTGTAACCAGCAACTAAGCAAGCAATACAAAGAAAATCGATATTGTAGGACATAAGGGGAAGTCAGACCAGCCAGAATTTTAAATACTGTCAATTTTGAAAACTTTGTAAAATATGAACATGATAAATAATAGATAAATTGGGCCTATTA----AATATTATTTACTGTTGATTTGTTAATTT----GTTAATTTTATGA----ACTTGTTATTGTCCAGTATTTTTATACTGAATAAATTT------------------GAGAAATAACATTGACAATTATTATAACTTGGAATATTTACAGT---CAATGCAATAACAATGCTAATGAAAGTTCCTACAGTGA-----GAACATACATAGAAAGCTACATGTTACACTTCTGTCAAATACAATTTCATTAAATCTTTAA
s HiC_scaffold_1 146231185 2008 + 233722169 TTCAGGTATTCACAGGGGGTCCTATAACACATCCCCCACAGATTATGGAGAGCCACTCTCCTCCCTTTTTTGAGTATAAAGCTTTCTGTTCAGAGAGAAAG---TTGAAATGGTAAAACGTTCCTTTCCCCTGAGATGGTAAGTTCAACTTCTCCGGGAA-ATGCTTGATTAGTTCTGGGGTTTCTTTGCCAATG-GATGTTCAGAACAGCTAAAGCCTACATG---CTTTCTAATGGCACAGGGTGTATTTCCACAACGGGTCAATCAGACGGTGAAAAATCACTTCTATAAATTAATTCAACACAGCCTCAAGGACTTATGTGAGTTCCAgcaaaatcttgaagatatacaATCGTATGCCTTGATCAACGGCACATAGCAATTTGTCTCAACTTCCACTCCCTATTAATTCACTTAGTTCAATGCATTTTAATGTGATTGTATGTGGACTTCCAAGCAATCTGGTTAAAGAACCCAAAATACACACGTAACTTCCCTTgggatatttatattttactttttgtctccATGGCTATCCTGAGATAAG-CAGTGCATGTATT--TTGCTACTTTGCCCTCTCATTTTCAttgaataaaacatattttggaGTCACAGCCTTTGAATTTCAGGTGATGCTGCCCAGGTGAGTAAAAACCACACTTCTGATTCAGTAATCCAGGGAAAACCAATTTCCCTTCCAAACCGAGAGTTCTTAAAACAAAATGAGGCAACATCTGACTATAAAGGAGGCCGACTCTGGAAGCTGT-TTCATTTCTAAAAGCTGTGATTCTCTGA--CCCAAAAGATAAATGTATGAAAACCAGAAAGGAAACCTGTAtcagaataaagaacaaaatcatccACCAAAGAGGAGgaatcataaaatacattttctattacTGACTCTTAAATCTTGCCTTCACTGTAAATCTTTATCGAATGAGAAACTAGAGTTAGCA---TTTCTTCCTGGATATGAACgtttttcttgtttgattttgtgcaAATGAGCCTAGTCTTTTTGACTTCTCTAAGacataaa--taatatcaaaatgaTGGTTCCTTG--AGTAAAA----AAAGTAGCAGGTAGTCATTAAGAGTTTGGCTTTGGAGTTGGCTTGGcttcatttccaaaatttttaagATATTAGGCAGCTAAATAGGAAAATTCAGGTTTCTTATCTGTAGAATTAGGGATAATGCATTTGCCTCTTAGGGGGGTTATAAAAGCTAAAGGAAGTGACTCATgtcaaaatacttgaaattttaattatgtcaatgtgttcatttattcattcaacaagttcattcattcaataagttcattcattcaacaagacTACCTTGTGTGAGGTACTGGTCTAAATTTTAGGGAAGAAGCACTGAGCCAGAGAGAGACCAGATCTACTCCCTGGGAATCTTGCTTACTACTGAGCAGGCAAACTTTAAAAA----CGAACAAATGAGTGCATGATATTAAATGTGAAGTAGCCTTTTACGAAAAAGAAACATGCATTTGAGCAGAGCTGTTTAAACCAAAGCCATATCACACCAGAAGGATTCCTTGTCTGT---AAGGAGTTACACACTGTAGACAGT-GGCTAGAATGGCCCTAGGAATCTCACCCATGCCCTTGCCCCATTAACTGGG--AACAACATGAAGAAACTTGA------AGGTCATGGTAGAAA--TAAAGTATCCCCAGTTTCAAATACCGT-GGTTTTAGACACCTTGGGCAAAATGTCCTCAGTGAGCAATAGATAATTGGGACCTATGAAAATAAGATTGTCAATTCttcatttggtatttttaaaagtacatttaggAAGAGAAGTATAATTCACCAATGATTCTGAAATGTAACACTTTTTGTCgcaaaaggacaaaatgaaataGCATTGACTAAAAGGGCCACAGTTGTTCTTTATAGCTAATAATGCAATAATATTGATAA-GAAGGTATTCACAATGATGTGCTAACAT-TATTGAAAGCTATGTGCTACCTCGTTGCCAGGTATAATCTCCCTGAATCTTCGA

a score=17571
s chr3           158946630 1014 + 160039680 tttaaaattatattaaaattaaGAAGCCATTTATATAACAAGAAATTTG--AATTACTTATGTA---TCA---AACATTATATAATTAATCAAATTCTGTTTTGAAACATTTTAACTGTCAAAATAGGTAGAA--ATTAACATGTAAATAAATTGTTATTGTTTGTGGTATGGTTAATTAAGGCTGGCTTTAAATTTTTCAAATGAAATA----------------------TCAGACTGTGAAA-ATTGAATGAAAATCAGCTTTG-CAATGTTATATTAAATAAA---CATTAAAAGGTAGTAAAAATCAGAGAGATA--GCATGGATGAAT-----GGACAAGGATAAACATATACCTATTGATTTTGAACAGGTAACTGGTAATTTTTCATGTA----CTAGCCTCAGTCTGTTCCACCATTT-----------------AATCTTTTTTTCATGTTTATTGTTTTC------------------------------CTCTTGCC-------------------------------------TTTACCTGCCTATT--CTTTTTCTTCTTAGC-TTACTTTTGAGGGGCACTGGCAAG--GGATGGTGGCTGCTCTTTGTTTACTAAACCATTTTTATAACCACTGGTCTTGGCTTACTTTCAGGATCCCAGGACCAATTTCTAATTCAGACATCCACAACCACCTCTCATGTCAAGAGCCAATTGAGATGACATCAATCAAATCCTTGCATAAATGCTGTCATCCCTGGGAGCTGCAGGCTGTCAGAGCAGATGGGACTCCACTCTCTGGGTTGTTC---ATTTACCCTCCAAGCCTCCTTCCTCTGGCAAAGCACTTA------GGTATAGCTAAGCCAAATAGCCTG-TGTAGTTTTCAAAGATTGTCTATCATTTGTTTTCTTCCCTTCCAGAACTATGATTTCAGCCATTTATCATTTTTGCAGAACTCATTCAAGATGATACATGTGAATAATACATATTTCTAAGTAATCTGAGCTAGTATAGCCCTTGTTATTGCTGAATTTTTATCGAGGATTTATGAAGATGGAA-----ATTGGCTTGAAAGCCATGCTTAGAGAATCCTGACTCT-TCTTTCTC-TTCAATATAAACTGGAATAGCACTCTCTGTTATATCT
s HiC_scaffold_1 146240957 1147 + 233722169 tttaaaatgctaaaataatt--gaaaccagttatataaaatgatatttattcaGTTCTCACATAGTTTCAGTGAATATTATACATTTGGTAAAGCTATATCCTTGAATGTTTTCAACATGGAAATACATAGAAGAATTTATGTATAAATAATTAAGGGCAGTCTGTAGTATGATCA-CAGAGATgggtctgaaaataaaaaaatgaaataaagaaaattctacaCATTATCAGCAGAATGTTCAATgttgaataaaaattaattcagatAATGTCAAAGTAAATTAAGTGaattaagaag-aataaaaataaaagaagtatgaCAGAGAGGAATAAGTGGGTCAATTATAGgtgaattatttttcattgtaagtAAGCAGCTGGTAATCAGTCATTTATTTCCTAGCCACGGATTTTGCTGTCGTTTCTTATCTTTAcatcttgaattttcttttcttctttttctttttcatggtattgggaatcaaactcacaacctcgctcttgccagataggtgccacaccgctgagctacacccccagctctttatttacttatttacttttcccTGTCTCCATTACTACTGAGGAGGAAAGGGGAGTGGGAAGAGGACAATTCCTTGGCTTTCCGGTGGTGTCC-TAACTGGTGCTCCTTGCTCACATCCAAGACCCTGGGACCCCTGTCTAACTCAGATGTCCTCAACAACCTGGCCCGCCAGGAGTCAGTGGGGATGCC-TCCATCAGTGCCCAGCGTAAAGGCC------------AGCTGCAGCCTGGAGGAACAGATGGGGCTGCAGTCTCTCGGCCCTCCTCAGGACACCTTCCCAGCCCTGCTCTCCCAACAAAGCCCTTGCATCCTGATACAGCAGAACCAAGAGATCTGCTTTTCCCTTTAATGATTGTCCATTGTTC--TTGCCTTCCCTTTGGCTCCTCGGTTTTAGCCATTTATCATCTTCACAGAACTGATTCGAAAAGATTTGTCTGACTAACCCACACTTCTAAATAATCTGTCACGGTGTGATCCTTGGCAATTCTG-ATTTTTACTTGGAATTCACAGAAAGGTGAATGTTATTGACTTAAAAGCCACAGGAAGTGAACTTCGATTTTATCTTACCCGTCCAAAATGAGCCAGAAGACTAATTTCTGGTTTGtct

a score=18721
s chr3           158971506 575 + 160039680 CCCACTATAGTGTTCCTAGTGCATATCTTAACATTGCACATAGTAGGACTTACTTGTAGCAGAAAAGCATAAT-----------AGGAA-----------------GGCTGAATGAGAAGGAAAGCAGCCTTTTAAGCCTTCTGAGGAGCTATTTGGGTCAAGTTGGCAGGTGTAAGATTCTTTCTTCTTTATCCCACACACTTCTGTAACTACAGAAGAATAGTCACATTGCTGAGTTT-CATAACTGGTGGTAGCTGGTATGTTTGAAGTTCAAGGGCTTTGTGAAGTTCTGCAGTGGGAAGTTCACTAGCTCTCTTCTC-------ACCACTGAAAGACATTTTCAC----TATTTATGAAACCAGAAATGCTGATACATTCATGGCAGATTTTCTTTTCAATTGATTGATTTTATTTTTCATAAACTTAGAATTACTTTTCAAAAACT--ATTTATTTGAATC-TCCTTTCATCACACTGTCTGTTGAATGCCACTGAGTTTTATTACTGTTTCAATTGGTAAAACCAGCCAGCCATGATGACTTGGTCAAGGTCTTCTTTTGCTTATATACTC-ATACTTTCCATTCTTATTAAAAAGAGAGAGAGAGAGAAGA
s HiC_scaffold_1 146255721 598 + 233722169 CTCACTGT--TGACCCCTGAGCTTATCTCTCTGTTGCATGTAGTA----CAGGTTGCAGTATCGAAGCATAGTGAAATGAGTGAAGGaaccaataaatgaataaatgaatgagtgaagagGAGGGC-------TCATCCTGCTTTGAAGCAATCTGGGTCAA-CTGGTGGGTGAAGAACCCTTTCTTCTCTATTCCCATCTCCTAGGTGACCCTAGGAGGATAACTACATTGCTGAGTTTTCATAACTGTCTCTAGCTAGTCCGTTTGAAGTTCGACAGTTCTGTGAAGTTCTTGGGTGTGAAGTATAGCAACTCTCTTCTCTGAGAGAAGCACTG--AGACTTTTTCACACTTTATTTATGAGACAAGAAGTGCTGATTCTTTCCCTGAAAAGT---TCTTCAAttgattgatttcattttt-ataaacttaGGATTACTTTTCTAAAACTCCATTTATTTGAGTCTTCTTTTCAGCTTTTTGTATTGAGAATGCCACTGGGTTTTATTATCATCTCAG-TGTTTAAAGCACTCTACAATGTTCACTGGGTCAAGGTCTTATCTTTTTGATATATTCaaaacttttctttctcatttaaaataacaaaacaaagaaaa

a score=37613
s chr3           158981372 1709 + 160039680 TTGTGGCTGCCTTCACCATCCTGTGACAACCTTCAGGCTTTAT---------GAAATCTCCAAGGAGTTC-GTTTGATGAATATTATCCTACTGAAATCCAAAGCTGAACAAAGAAGTTTTAAAATTAAAAAAAGTACTTATTTAAGTCTAATCTC---CTTTAGATATTTTAAGGATAAGTGTTTTGTTTACTTGTTCAATTTAGCTTTTGAATTGCCTCACTTCTCCACTTAACTGTGTAGATCTGCTGGTAG-GATGACATGGAGAAGAGCTCTTTTTTGTAGTTATAAAAGTATGTCTAAGATATTCATTGTAAATTGTGTGCCAAATCTATGAACCTTTATTTAAATTGGATTTTAAAAAGTGATACTTGTGAGTTTTGCATCCTTGGCTTTCTACCTTGT--------TTAATAATG-----------------------------GACTAC-------------------------------------------GAGACAC-----------------------TTTTAAAATATTTAAATTTGAACATTGTTGTCTGTTTTC--AAGTATATAAAAATTATGCTGTGGATCTCTTATGAGGCAATAATTAAAAGCTCTCAGAGGGAAATAAGACAGAAATTGTAGAATACAGTACATCTGTACTGCTTATTATGAGAGAGTCCCTACTAGATGCTATGAAAATCTTAGTTTTAGGAGGCATGAGCTTTTT-TTCCCCATGAAGTCTGTGGAACATGAACTGTGATGGTGTAGTTTCATTTATGTTGAAAGAAATTTTAGTCTCAACTCACTGATTGGGATACTGTTTTTTATTAATAAGTCTACTATG---TTCAACCAGCTGGACATGCTCTGCTAACTCTGGAAGTAAGTGG-ATGAAAACATTAGCTGCCTGGCCCAAGTTCTAACTTTCCATCTGTGAGTCAACCCCATTTTCTGATGCTCTACATATGAGGTTAATGAACAAAGTTAGAAAAGTATTAAGAGGGACTGTGGAAAATGGGGAGCTTGGGAAATGATGGTAGAGGACTTGGAAGCA-----GTTATTATTTCTTGATATTATTAAA----------TGTTCTTCCCCCTGAACAATAATATAA--GGCCTCTGGATGAAAGAGTTGCAGGGGA-GGATTTTCAACTCAGCTCATTTTAATCCAGAAAATATTGATTCACACTCACCCACCAGGAATAAGTTCAAATGTTATATTTCTCTTG---------GTTGTTTGAGGGAATTCTGGTCATAACCTTCCAAAAACATCTCTACTAATCACCAAATATCAAGGTGTGTTCAGTCCC---------------TTTTTT----TCCCTGACTCTTAG------------------------------TTATTCTCTTTCATGTACTCATTCATGTTTCA---GTTTATGGCTTTATTTAATAGAGGCAATCAAATACA--TATAAATAACTAG-----ATATTCAA-CAATGGCATATTTTCTTTAAAGAAAAAAATATCTCTTGAGAAGAATTATAT--GTAA------------AAAGTGAAAAATAGATCTTTAATCATATACTGAAATAGTTCTCTACCAGTACTCTATGTACTATATGTA-CTCTACTAGTAACATTATTTTACTGACATGTATAATGATTAAGGAAA--TGTGGATTGTTTACCCTGTAAAGAA-AATTAAGTGAACTTTTGAAGCCATTTAATGAGAACACTGATACTCTCCTTTAAGAGATTAGACATGCAAGC-------------------------------AAACTTTTAATAAATATCTATTGAAGACCTGATATAGGTCAAGCAAAGTCTTTAGTATTTACTGAGATGGGAAATAGTTTTTAAAGATGTTTAATCATGGGGTTTTAATACTGTATATGATAGTAAAGGTCAGATCA-AGAGAGAG
s HiC_scaffold_1 146263743 1879 + 233722169 TTGGTGCTTCCTTCATCATCCTAAGCTACTTTCTTGGCTTTATATTGTTAACGAATTCTCCAAAGTGTGAAGGTTAATGACTATCATGCTATTGGAGGCCAGAACCGGAGACATGAGTTGGAAATTTGAAAAATCTATGCATGCAAGTTAAGTTCTGGACTTCAGATATTTTAAGCCTGAGTGTTCTGTTTACTTGTTCAATTTAGCTTTAGAATTGCCTCCCTTCTTCACTTCACTGAGCATGTCTTCTGGTAAAGATGATGTGAAGGAGAGTTCATTTC-ATAATTAGACAATTGTGCCCAAGATGTTTTCTGTAAATTATGTAGCAAATTGGTGAGCCCTTATTTAAATTGGGTTTTTTAAACTGGCATTTGTGAATATCACATCCTACATTTTCTACTTCGTgactcattttcaaaatatttagatttttctggGTGCAATGGTGCATGTCTACAATCCCAACTATTCAGTAGGCCGAGGCAGGAAATCAAGAGTTAGAGCCACGTCTGGTCTACtttgggaccttgtctcaaaaaaaaaaagtttgaacatTGTAATCTGTCTACCTACGTATGTAAAAATAACTGTATAAAGCAAGTATGAACTATCGATGTAGGTCTCCAAAAG--------------AATTCTACAA-AGGGAACATACATTCTTCTTTGTGGTGGGAAGCTTTTATTAGATGCTGAGGAGTCCTCAGCTTAA-----TCTGATCTTTCTCTTCCCCATACAGTCTGTGAAACATTCATTGTGActgtgtggtttcttttct-ttgaaacaaacTTTAGTCTCCATTCCATGACTATGACAGAATGCTGTATTAATAAGTCTCCTATGATGCTAAATCAGATGGACACACTTGACTGACC-----AGAGGATGGCACGAATGCATCAGCTGTCTGGCCTGAGTTCTAACTCCCCATCTGTGAGCTGGCCCCATTTTCTGATGCTGTACATGGAAGATTAATAAACAAAGTTAGAAGAG--------GGGAct-tgaaa---------------aaaacaagataaagtaCTTGGAAATATAATTGTTATTATTCACTGAGATTTTTAAACCTGGCTGTTTGTTTTCGCCCTGAAGCAATAACACAGATGCTCTCTGGACACGAGATTCAGAAGGAATGGATATTCGACTCAACTCAATTCAATTGGACAAACATTGATTCATTTCTCTCTACtatgaataaaatcaaatataatatttttgcTGGACAATAGAGTGGTTTGGGATCACCTTGTGTGTGACCTTCAAATA-----------AATCTCTGAAGATCAAGTCATGTCCAGCCCCcactttttataattattttttgttgtttcataTTCTTAGtgcctctctgtgtgtgtgtctatgtacatctttttctttttccccttcccatcATCTTTTCAGATGTCACTGTCTGTATCT--TGGACACA---AAGCACAATCACAGATCACAAGGAAAAATATTCAAGTGATTGGATgttttcataaaaaaagaaaaaaaatcttgagaaaaattttattagtaaacaGATTGCAACAAAGTGAAA---GTAACTTTAATCAT-CAATTAAATGCTTtacaaaaaatactttataaatcat---tacctttattaata----tattt---tgacatatgaaa----aaaagaaatttatgctTTATTTATATGGTGAAGGATAATTATATGAATTCTTGGTACTCTTAAAAGAGGATATCAGGGTTGCCATTTCAGGGATTTCAAATAGGAGCAAAGACTTTGCTGTGTCTTTACTATGTCATGAAAATTTCAATAAGCATCT-TTTAAGGTCTTACAATTGTCAAGCAGAACTTTTGGTAGCTAGtgaga-agaaaataatac---aaagtcaATGACCACGTGATTAT-ACAATGCAGCTGATAATAAATTTAAGAATACGGAGAGAG

a score=41884
s chr3           158984577 2141 + 160039680 AGCCATGACT-----GTAGAATTCTGGTGCCAGGCTAAGAATCAATGAATTTTTTTCCTTAT--CTTGTATATTTCTCTATTTCTGTTAACAGCAGCTTTCTGT--AATAAAAACTGGGCCTCTTATAGT--GTTAT--AAGTCAGTTGCAAACTAGTGAGTGTAGTCTTTACTGGGACAT-CACTTTGTTATGTTATACAGAAAATGTTCTTAGTACTGATTTTGCTTTATCTTGTCTAATCTAT-CAGCAATTTCAGGAGGAAACTG-ATTGTACGGGTCCTAGTCAGTT--------TTTTAGCCCGAGTTTATATTCTGATTCCTTAGCAGAATAATGTATACTTCATG-----ATCAATTCTACAGAATATCCTAGTCTGGCTGTGTATAAGCCAGACAGATCAAGATTTACTacacacacacacacacacacaTGAATGAATATTGCCTCCGATGATTT---------TCTTG----------TTTTTGTTCCTGTAGAGTCACTCTGAATCAGCATAATTATAATTCAGGGGTCTAGGCTGATTGTTAAATATGCTGTGGTTTGTGAGAGAGAT-GAGCTTCAGAATATTTTTATATCATATTC---TTCAAATAACAATTATTTTGTTCTT----GAGATAAGCAAAGTTTGTCTACAGAGAATATTC--------AAGTCAGTACCTAACATACCTGTTGCCATGGTCTATCCTTATTGGCTTGGCGAAAGC---AGAGTAAATCTGACATTCTTTGTTTATTAAATGGAAATTTTCTTTACT-ATAAAAATATTGGAGATAGGGTGAGAATCTGTTTTGTTTTT-AAAGGCATGACCTCAAATGTTATGTTTTATAAGATCTCTGCTTTAAGTTAGATTAATTCTAAGACATATTACAGTGTATGATGGAATCCAAAAAGGCTTACGATTCATAAAAATGTAATTGGAATACAACATCTTTCTCCC-CCAGCTATTCGAACTGGTATTTG------------TAGTCTTTTTTCATGTAAATAAGAATGGGTGGTATAATGTCCTTTTTAGACTAGAGCTATATACAAAAGA-TGGCAAAATGTGTGTAAAGTGGTTGGCATAGA-----CCCTAATGCAGAAGA---GGTAGAGGATTTGGAATACAAATTAGTCCATGGCTCTGGACCCTAGGAGCAAAGCTAGAGTGTGAGTGATTTTAGGTTCATACAGAT---TAAGACATAACATGTAAAAATGCCCTACTTTTTAAAATGAGGGCTGCTCATGTTGAAGCTGTGATTAAT-AGATATTCTGAAAATTCCACTCAA------------TTGCTGGATATAACCTAATGGATGTGTGTGATCAGTCACATTTGAGCCCCTGGTTCTGAAAACACACACATACAATCATGGACTTTAGAGGCCCAGAATGACAACCTGCTGTTTCTGCCTTTCTGCTTGGTGGCATGTCCATGAACGTCTTAAACTAAATAATCATCACTTCATTGGTGTGTCC------GATGATGCTTTTATCCCAGCAGGATAAATCCCTCTTGTCAAAATTGGCACCAATTATGCAAATGAAATCTGAAGGGTTCATTAGCTAAGTGGTAATTGAAGTAGCTTGCATCAAAGAAACGGTATATAAAATTTCTATCAAGAAAAATCACTTCATTTTTACAATAACCTTTAAAGGCTTCTCAGCAAATGATAAATAAACCCAGAATTTTAGAAT---AGCAGATATTT------------------------AAAGAATTTG---------------CAACT----AAATTTCTGTTCAGAGTACAATTCTGTCttt-----gttctttttttttttttttctttctttttttttGGACTTTTTCTTTGATTAGAATGCATGGCTTATGGTAGCAACAAAAAAAGATGAAGAACTTTATTTCAAGACATAGCATTGCATTGTTAACT-----TCCATAAAATAAGCAAGTTTCTATTAAAAG-AGGTTCATGATAACTTCCCCAGTCACTCTGGACAGATTTAAAA-----TCCATGCAAGGTAGGAATCTAGCTTTCATGGCTGGCTTTGTTAGTACAACGGATTTT-CAGTAGTTCTTCCTCCTCAATTTCAAGAAAAGTTTATATTGATTGAATTG--ACATTTTTCCCTTAAATTTCTCTTGCAACTTATGAATGAAATCATTTGGAGCTATACCCATAGAAcattgtaatttaaggggattttaagaaaagaggcatctacttgaatatggctttttaagtcctgcagtgtaacaatttctgttttta
s HiC_scaffold_1 146268058 2197 + 233722169 AGCTCTGACTTCAAGGTAAGTTTCTGGTTCCTTTTCAA------ATGTActtattccttttttccccacatactTCTCCATTTCTAACAATGGTAGCTTTCTATTCCGTAAAGGTTAGGACTCTTAGATTAAGTTATCTGAATCAAT--AAAAAGAATGCTTGTG--CTTTACTGAAACATGTGATTAATTGTGTTATCTAGGAAATCTTGTTAGCGTTGGTTTTGTTATATCACAGTTGATCCATACAGCTATTCCAGAAGGAATCTGGATTTTATGGAGTTTAGTAAGAGACAAGAAATGTTAACTTG-GCTTTTACTCTGATTCCTTAACCCAGTAAT---CAAATTATGGGCCTATGAGTTTTATGCAGTATCtatgtatg--tgtgcgtgtgcaaCACAAATCAAAATGCA--------------ACAGtgatttgtgttaatttt----ttgatgatttgtgttaattttttgatgatttaaCTTTTTGTACTTCTAGAATCATTCCGAATCATTTTCATTGCCATATAGGAATCCATGCAAATTATTAACTATGCTTTAGTCTGGAAGAATGATCgttttttataataattttattagaaattcCCCTTCACCTAGCTACTGCTTTAATCCCCCCAAAATTGGGCTGAATTC-tatttaaggaattttttttttcaaaagccgGCCTCTG-CAAACTGATTGATGTGGTTTATCACTACTGGCTTGGAGGAAGGCAGAGAATAAACCTGACATT-----TTGCTTGATTGAAACGATGCTTCACTgatataaagaatgaaa----gaggaagatttgttttgttttttacagacATGATCTCAATCACTGTTTGATCTAGGAGCTCAATTTTAAATCAAATTGCTTCTAAGATAAAGTATAAAGTAGGAGGCAGTGTAAAA--------------------TTTGATTTGAATCCCATGTTCTCCCCCTACCAGCTTTGGGGATTATAATTTACCTTGATCCTGATTTTCTGTTATCATGTATAAATGA--GGATGCTAGCACGCCCTTC-----ACAAAGCTG---GCAAAAGAGTGACATAAAACATGGGAATAGTTTAGCACAGAGCCTACCCTAACATAAAGCATCAGGTGGAGCGTCAACTATGCAACTTAATACATGTCTCTGGAGCTCCAAAACTAAG--AGACGCAGAGAGATCTGAGAGAATCACAATTATgtagaaaataa--tgtaaaaatgttttcaaatttgaaAGAAGCATAGTTCATTTTGAAG--ATGACTGTTCAGGTTGTCAGAAGATGCTactcaaatgaaaatttcatcGCTATTTCCAACTTTAACGATGAGTGTAATCATGT---TTCAAGGCCAAAGCTCTGTAAACAGAT-------------GACTGTAAGAATTGAGGGTGACCGGATG-TCTTTCTACCTGTCTGCTTAGCGCTGTGTATGTGCTGACCTTAAACCCAATAATCGTCACTGTACTGGTGAATCCAATGGTGGTGATGCTTTTATCACAGCAGGAAAAATTCATCTTGTCAAAATTGGCAACAATTATGCAAATCAAAGCTGAGGGGTTCATTAGCTAGATAGTAATTCGAGTAACTTGAATTAAAGAAAAGATATACAAAATTTCTATCACGAAAAATCACTTCATTGTTACAATAACCTTTAAGAA--TCTgagtaaatgataaataaa-tcaaaattttagaattaaaggTGATATCTcaattcacaaatgcttctgtttgcaaataatttggttCGCAAACAGAACCATCTGGAAAAATTTCGCTTGCAATTACAAAACAGATGTTTAAAGGATTCACAGTTGACATTCTCTTCAGGGTTCTTTGAATTTGTTCTTTGATTAGAAT-TGTGGCTTATGGTACTAAT-GACACAGATAATGGGCATTATTTTGAAGTACAGCACTGTATTATCAATTTATGATATATAGAATCAATAacaatttattgaaagaaaattcaag---acTTTGCTAATCATCTCAAGTGTATTTGATAAGTTTCTCATATGCGCTTTGCTACTGACACCTATTACTAGCTTCATTAGCATGATGAGTTTTAAAGTATTTCCTCCTCTTTGATTTCCCAGGAAGTTT---TGTATTGAATTggtatattttttccttaaatatctcCTAAAATTTAT--------CCACATGAAGTTTTATCTGTGGaacattataatttaaaataattattttataggtAGCATGTTGTTG--TTTGGATTTTTTAACC---CAGTGCAATGGTtgctgcatcta

a score=15717
s chr3           159004225 763 + 160039680 CACTGTAAATGAATAA---CCTG--TGGCTATTTCTCTTTGTTCATTTTCCCATTAGACCCTCTCAACA---CCAGGCTGCAGGAAAGGGTAGAGAAAGCAACCATTTT-ATGCTGAAACGTTATTACCTCAA--CTCCT------TTTGTAACTTAGAAAGGCTCAACTAGT--CATAGAAAGAATCTTTT--TTTCTTGGTACAGCACTTTAACAAAGAAGGATTT--CCTTGAAGTTCCTAAACACTGGTCGAA-GGTCAAAAAACTAATTAG----GATAATTGCGCTATTCTTGGTAATGAATGCTTAATGTCATGATTAGATCAATTAAGCTAAGCTTGAAGTTGATTACTTAAAGACACCACTACAGAGTACACAACTAATATTAAAACTGTTTTTTGAAGACCAGGGACTTCCT-GTGTCATATAATTTGAAGTATCTTGTTCAGTGTTTTAACAGTAAAAGGCACAGAGTTCACTTGTATAATTTTCAACTAAATTAAACACCATAATTGATATGCTGGTGTGTCTGTGGTGGTGGTGGGGAGTAGTAAATTTGACCTTTCTTGT----GTGTCAGTCAAGCATTTAATCATTTAATTACATAACTTCTCCATAACACTGACCTTACTAAGATATAATAATGGAAAAGGATGAAAATACATAATGCTTTAATGTACTGAAATACTGCTATGGATAATGCCAGATCACCTAAGAAATGGTGGTGCCATGTCCACAAGGATAATTTA-GTGTTA-TATACTAAAGCAGTAAGAGGAAGGT----AACTATTAAAT
s HiC_scaffold_1 146276670 748 + 233722169 CGCGGTAAGTGAGTAAAAGCTTGATTGCCGATTTCAGTTCGGCCCTTGTCCTGTCTGACTCACTCACCATTTCTGAGCTGCCAGAAAT-----AGAAACTACCCATTTTCAGATTTAAATGCAAGTACTTTAAGGTTCATACATAATTCGTA-TTTAAAAAGGCTCACCTAGTGTCAATGAAAGGATGCTATGATTTCCCAGTATGAAGTTTTATATATGAAGACTTTTCCCTCTGAGTTTCTACAAAATGGACAAAAGGCCAGAAAACTAATTAGTGAGGTTAATCATCATATTCTCAGTAATGACTGCATCATGTCACAATTATATTAATTAAGCAAAACTTAATGCTGATTGCTTACAGACACCTTGATGGAATATGGGACTGATGTTAAAATTGTTCCTTGAAGATCAAACACTTACTAATTACATACAATTTACACGATCAAACTCAATGTGTTAATAGC---AGGTACACAGTACACGTTTGTAATTTTCAACTAAATTAAACACTGGGGGTGGCATATCATATTGTTT--------------------TACATTTGATCTTTCTCATTCAGACATCATTTAATCACTTATACACTTTATTATGTGCCCACTAGATCA------------TAAGCTGTAA-----------GATAAAACTACATGATCTCTCACTTCGATGAAATATCAGAGCATACAGTGCCAGCCCTCC--ATAGGTTGTGACTCAGTGTTGCTAAGAACAGTCTCTGTGGGACTTTACTGAaacacaaagaggaaaataagaaactCTTAAAT

a score=37855
s chr3           159009192 2733 + 160039680 TACACTAGTGTATACTTGGTGCTTTAAGTACTAATTACAAAGATGCCATTAATCTATGACAAGTAGCATTTCCAAAGCTAAGTATATAGTCTTCTTTTTACTTAGGACCATGTTTGTGGGCTATCTCAGTACCTCATTACTTTAGT---------ATATCTTCCCAGACT--TGCGTGTGTTCCTGGTGTGATTTTTCCTTTTTAACTGTGGAGTATCTCAAATTTAGTGTAACAAAATAACTTCTAAAAGTTTTTTTTCAAATCTCAGTGTTTTCTCGGCCAACCTGCGTATTAGAAATCTTGGTAAATGAAGCCACCATCCACtgagtttgaagccacactgatctacaaagtgagtttcaggacagtcaaggcttcacagaaaaaccctgtatcaaaaaaccaaaaAGACCAGCAAACAAACAAACAACAACCCTCTCAAACCCTCTAATACTTATAATCAATTCTATCTCATTATT--TCTCCAAAGGGGGCTTTTTTCTTT----------CTTTTTTCTTTTATTTGTTTATTACAACACTTTCTCTTATGTACATTTCTGAAAAAGCCTTAGCTTTGTTCTTCAGCTCTTGTTTCCTCTTA---------ATCATGTTATTCTCTTCTAAGAATGTGTAAATTATGTTTTCCA---TCCAACTATATTTTTAAAAATTCTATATTTTGTATGAGATATATAGCCACATAAT------CCCATCCTTTCCTTTTAGTCTTCACAAAGTTTCAATGTCCCCTTTTGCTCCAGTGTAACTGGGTGTTCAGTTGTGAAAACAATAAAGTCTTATCTGTTTCTTAGCAAAAGAAAATTCTTTTTTCCATTAATCTATTAATGGAAAATTAATAGATTTCCATTAAAATCTAAATTTCACACTATCCCCT-----GCTCTTTGAATTGAGACAAAATTTTCAGAAAAC-TTGGTGGTGTTTTCTGATTATTT---------------------------------TTTATCATGAATATTTCCTTTCAAT--AATATCCACTATTGTTCACTGTGAACATTAT-----CCTGAATATTTGGACATCAGGAGTATATAAATTTCAATAGTTA-CACATGCGCCATAAAATTGTCTATAAATCTGGATCGTTGCTAATTTCT----AAT--TTGAACACAGCATGGTCATTATATGCACACATACATACCACTAGTGACAAATGGATGTGAAAAACATAAGAATTAAGAATAATTAA-TTTGTTTATTCAATAAAAAATAAGCTAAGTGAGCATATGGGTCCTCCTTTTTTTTTTCTTTTTACTTTGCTATATTTTGATTTTATTTTAGAGTTATTTTAACTTTTGCTTAAAAAATGTT-AAATATTCAAAAAAGAAAAGAATAAAGTGTGTGGTATG-GCTTTCACCTA----AGGAAGCACCATGACTTCTGACCC---------TCATTTGACCTCTGCCCTAACTCCTCATCTTGGTTCTCAAA-ATTAAATCCC-ATGACTTCTAGTAAGACCTCCTAGAAATTATTTAAAAGTTAAAGTTTCTGCTGGATATGTTAAATACAAGCTATATTTAAATACAGATACAATTTAG------TGCGAGAATTGGGGCATGTAAATACAGCAATTAGAGCAAAAGAGCAAAGCGTTGATTCTGTTTTATTGATGAGAGCAGGGAAGTGGAAACCAGGGCTgagagcagggaagtggaaaccagggcttggggttttattcccagctgtgttgctttttgcagttttcaggagaaacacattttatctgtctcagtttacccatctagaaCTAAAATTTTCATTTC-CTTTCTAAAGTGATTCTTTACTATAGGATTAAAACTGTCTAGATTAATCTTTTTTTTATGTA-AACACATACAAT----GTAACATT---GCCTCATTCACAAGGATGCTTTATATTAGAATGAAA----CAATATAAAATAAGTTAGCCAAGCTGTCTGCATAGCCATCATGTGGAGTAACATTGC-------TAGTG----GACTTGGCAAGCTGAAGGAAGAAGGTTCAGAGTCAAAACTG------------TGTTTCAGGACAAAGACAGTATGACCA-AACAGATCTTCCCCACATTACCAAGACTAGAGACA-----------------GAGcagtcttttttgaaccctcttttctac-----------tttgtccttaggcctttggtctagctagt----tttatcaagaagatttcaaagtcagtgctacagtttaaatatgggcagtgtttccaagca-cca--catattagaagcttgttccct--gctgacagtattagaaagttcaatgggcctttaagaggaaaggcctattgtgtggtactaatgggactgtggatatgacctgaaagaggactgtgggataatagact---------cttcc----------tgtgaggaatttgttccagcacgggcttcctgctgttaccatcTGCAACCCTCAC-TGAGGCCAGAAACAAAGGGGTTATTTGAATTGCAGCTAGAATCTCCAGGGCCACAAACTTACC-------------TTGAAGGTTAGCAGCCTTTCCTTTTTCATTACAGTGATGTTAGGC----TAACCTATACTGTTTAAGGAGCTTACCCCCCACCCC-----------CCATATCAGACCATATTCAGTGACTGATAAAATCCTTCATCCTCTACTCTTGATATTAGTAA-TCCATTTTGCAAGAATTCTTAGTACTCTCATCTTTTTTTTT-------------CCCTTCA-CTGACTCCTT--------------TATCCAA-GTAGCTCCCTAACTTTCTTCCTTATTAGGATAGTCTTGTCAGCTAT-------------TTATCTTTGATGTCTCC-----------------AATTTTCTC---AACCCCAGTTTT----------------------GAGACCCAGTTTCTCAAGATAATCTAATGCACTGAAAGCTCAGATGCTGGGAAATCTTT
s HiC_scaffold_1 146282781 2785 + 233722169 tatatttgtgtatatttagTGCTTTATGACACAATCACAAAGATGTCACTAATGGATCACA--TGGCACTTTCAAAGTTTAATCCTCTGGTCTCTTAGGACTTAGAGCAGTCTTTTTAGATTATCTTCTAACTCAGTTATCTCAGTCCTATAAAAATGTCTCCCCCAACTCCTGATTGAGCtcctgttgttgtttttc--tattgACTACTGGACATCTTAAAAGC--CATAACCAAGCAA------AAGGAAAATTTCCAGATCTCCATGTCAGCTCAACAGATTTGCATCTTCTCTATCCTG-----CGTGGCCACCATCCACC----------CAACACTG-----------------CAGGGCACTC-------------------------------------------------------------------CTAGATATCTCTCATATTCACAATTAATCCTTCCTCTTCATTAGCTCTCAACTGTGACTCCTGCTTTTGAACATGTTACTGTATTACTTTGGATATTTATCA--------GCTCTCATCCACATTACTCAAAAATCCCCAAATTAAttttttgacttctgttttttcctctctaCTCACATCATGTAGTT------TAAGAATGTGCAAATTAATTTTGTCAGTTTCTGCTCAAATTTCACAGAATACTGCATGTGGTATAAAACA----GTCATGTAATGGCTTTCCCAgtatttgtttctgtattttgcaca--ttctgt-ttctttctcgaTTCACTGTATTTGGA-GTTCCATC---------ACCAAGTCTTA------------------AAAACTAGtc-----------ctatttat--------------tttgtattagaaTATGAAGATCATATTATTTCCCAATGAGATATttctattgaaataaaaatttctgaaagcACTGGTGAAAATTTCTGTTTCCTTGTCACTTGCAAATGTTCTGAGTTACTGGGGAAATTCATCATGTCTATTTCCTTTCAATCCAATACTCAGTGTCTTTCCCCTTAAGCAGTGATAGCACGTGAGTGCACGAATA----GAGTATATTCATGTCAGTATTTGGTACCAACACCATTGGA----------GTTCAAGCCTTCACTATTTTCCCTAGAGTCATTCAACATATCATGTTCATTGTATGCATGCAAATCTCTTACTA-TGACATTTGGAAAACGGAAATTAAAGATGCATGCATATTAAAAGTTGTATATT----AAAAAGTAAGCTTAGTGAGCAACTGGATACA------GATATTCTTTTCACTGggtcatatttt-----tatattagtgGCATTTAAAGCTTGGCTACATAGATGTTCAAACAGtcacag--gaagagaaagaatgcCGTCTTACGAGTTCTTATCTACACTGGGAACCGCAGTG-TGTGTGACCCGTGGTTTAGTCATTTAACAGTCGTGTTACTTTCTCTCCTGGGTTTACAAAGACTAAATTCCTGTAGCTTCTCCTAAGAGCTcttagaaatgatttaaaatttaaagcttCTGCTGGGGATGTTAAGcacaatttacatttaaatacaaatacaatttagaaTTAATGGGAGAATTGGGGCATGTAAATACAGCAATC--------AGAGCAAGGTGCTGGCCGTGTTTTATTGATGAGAACAGGGAACTGGGAATCCAGGTTG--------------------------CATGATTAAATTCCCAGCTCTGCTCCTTTTAGTAGTTATCAAGAGAAACACATTTCACTTGTCTCAGTTTACCCATCTGGAAAGAAaaactgcatttctttttctgatgtgagTCTGTAATAGATTACCAAAGTTGTCTAAATTCACCTTTATGGTATAAACAAGAGATTCGATTTCAGTATAATTCTCACATCATTGAAAAGGCTTTTTTCTACTTGAAGGCAAAGGCTGAGATCAATGACAAGAACCCACCTGTACG---AGTTGTCAGGCTCAGCACCACCACGTTCTCACAGTGCACAGATTTGGTGGTAAGAATTCTCACAGTCCAGGGTAGGAACTGAAGAGTAGAGGATATTTCAG---AAAGATGAAATAACCACGATGAGTCCTCTCCACAACACTAAGAATGATGATCTCCTTGACCAAGTTTTTAAATAGGGTTCTCTGAACCTGCTTCCCAAAGAAACCTTATGCTTATGCTTGTGCCTTTGACTTGCCTAATCCAGTTCTTCAAGAGTCCTGTTAAACTGGTACTATGGTTTAAAAATGGGT--TGTCTGCAGGGAGCCAACCATATGCAAGTCTTGGGCCTCAGGATGGTGATTTGGGGAGGTGCTATGGATCT---AAAGGCGAGGCCTCATATAGGTCCCCTGGGTGACCATGCGTGTGCCGTAGAGGGGGAATGTAGGGCTCCAGGCTTTGGTTCTGTTTCCTGGTACCTGGTGTGAGTAAGTCTCCTGAGT----GTCCCCTGCCATGAGCATCTGGTACCCTCACAGGAGGCCCAAAGCTATGGGGTCACGCGATTTGT--CTGGAATTTTCAGAACCGTGAACTAAACAAGCTTGTTCTTTTTATGAGTTAACTGCCTTGTGTGTCTCATTGTGGTAACATGAAGCCAAGTAACAGAGACCGAATAGGGATCT--CTCCTTAGCCTGAGCAGCTGAGTCACATCAGAGCATCCTCCACAGTTGATAATATTCTTCTACCTC-ACCTTTGATATCGTTAAGTTGGTTTAGCAAGAATTCTCCCTACCCTTTCATTTCCTACTACTCATCTACAAACCCTTAATCTCGCTCCTCATTTGTTTTTGCAATATTCAGTGAAGCGCCCCACTTTTCTTCCATACTGAGAGAGCCTGAGACCCTATTGCAATACTGTTATTGTTTCTAGTATCTCCTCTTTTATTGTCagaataattttctctttaatatcaGCATCTCAAAACAGACATAGAATGGAGGAGCCCTACTGTCCCAGGAGAATCATGTGAACTTAAATCTAAGCT-CTGGGAAACCTCT

a score=60188
s chr3           159014778 2938 + 160039680 AGGGCACACCCACCCACCTCTGCCATTCACTAAGATGAATTTGGTAGCCTATCCATGCACTGTTCCT-CTTGTGTCTTCTAAGCTAAACACAAA----------CCAGGCTCCCTTTTCTTTTTCTGACTCCCTGGCATCCCTCAGACACTTTCCTTTGAGA-ATTCCTACCAGTGCACCTGGTCT-TTCTTTTAATAAAAGCCTAGATATACCCACTTTCCTACAGAGAGCTTGTTGTTTTGCTTTTT--AGTTTGACAACTGGATCACTGACCACCAAATAACTAG-GAAGATATTG-------TTTCCATTTGTTATGGATCACACAACAT-TACATGTGTTGG-----CTTTCAAATTC----CATAGAA---CTCAGCCTGCCAGGATAC----TTTTATCACTAAAGGAAAGAAGTCTTGATACAAAAATATAG-------------------------------------------AATTAGAAGACTCACTGACTTTGACAGAATAGGATCAGGAGAAAGAAGCTgggctagggctccatgtagagttcttccctagcatatatgaaggcttggatttggttcctatcactactaaaaTAGTAGAAAGCCTTATCATTATCTAATTTAACATTATGACCTCTGGTGATTGtttattaaatttaa-------tatattttct-atat-ttatatCCTAATATAAAA-ATGGAGCCAACAATGCCTTATCCT--TATTATATTAGGTTGTC-------------ATGAAAAGTGATGCTTTGGAGCAACTTTACTTAAGAATAAACTAAAGCTGTTGCTAGAGGTACTTTGAGAATTTGAGGGAGGGTGTTAAGCAACTAGCTAAAAGATCATAAATATATGG-ACAAATGTCCCATTAAGTAGAAGA------GAAAAGAGTATATCAAAAAATTGATGAAAATGAAGCATTCTCTCTATCTTCATGAGGAGCCCAGTACATCTCAGACAATTTAAGATGTATCTTATATATCAATATCTATCAACTCAAGGTGAATATGGGTACCATGAA-CTTTTTTATAGTTGTCTGAAGAACGGGAAATATTGCCATGACAAACCAAAACA------GTGACAAAAAAATGTTAGATAAGTCATGATAACAGTAGGCAACACACAGTACTGATACACAAGTCACCTAATTTCTT----CTTTCAGGACTCCTCAGAAGCATTGCCAGTTTATATGCAAATTTGGGAAGGAGTCACCA------TTGTTTTAAGTGTTAATTTACGATTATTTATA-CTCAGGGATGAAAGAATTGAATGATGGTGGTGATTACTATtatattaaagtattttgtaaactgtgaagttctaaacaaaagtgaTATAATCCTATACTCATAGTTTAAGATTTAATGAAACCTCTGGGTATGTACTTTCTATAATAGATGTTAGATTTTAAAATAGGAAAACATATGCAAA----TGTGTTTTGTGACACTGATATGCAAATCTGAGCCAATATTGAA-TACAG-------------AGCAAACAAGTTACT-----GTATGTTTCTCCTGACCTAGCATCAGTCTATTTTTAGATATGTGCAGGAGAGCTGCTGCTTAAGGGATAATTAAAGAGCAAAGAGGGGA--TTGAATTTGAGAGACATTCTTCTGATTATCATTCCCACATTTATTTCTTCTAGAATAATCTTCATTACCCATAATCCAGTTAGTTAATGTTTTGTGTCAAGCACTATTTCTGAAAAAGAAACAGGGAATCAGAAATCAAAACTATTAGAGACCTATTTCTT------------------TCTTGT-ACCTGCAATCAGTTCTATAATCTCAGAAACCACCCATCTGTCAGATATTTATTCCTTCTACTCCAGCATGCTAAACTTTG-CCAAAGTCCAAGCAAACATGTTTTATGCATGACCTTGAAGACTAGATGACAGCAAGGAACAGAGCAACAAAAATT--GCCCTTCCCACTTTCACACTCTAATTACAGCTAACA-CAACTGTCTTTCAGAATCCCAATTTGGTTCTTAAATTAAATCTGGGATGTCCCTAATGCATGAACAATTGCTTCCAGGATAACTGAGGTACTGGGCCTCATTCTCTATAAATGTCATTCATTTTGTCAGAATTCCCCAAAGCAAACAAATTCCTCAAGAAATCTTGATTTAGGGGAGGCACTAGACAAATACTGGCAATTAAGTCATTTAATTTATTCAGTCCACCTCTACACTAGGTGATGGGAATAAAGCAACAGTGAAGAAAAGGTCCTCCCTTTCATGATAATATACTAGATAATAAATGCATATGCAAAATACA--GAAATTTTAGATAAAA-TAAAATTCTACTGCAATTAATGAAGATTAGTTATGATGGTCATGGAGCCTGAGCGTTTCTCAGA--GAATACAGGAGGAGT-ATG----ATAAGTATCTGAAGGCAGTGAAGAC----CGAAGAGCAAAGCAAATGCCAAGGTTTT-----------ATAAGAGGAACTTG--GTAACTGCAAGAATGCCTAA-----------------AAAGAGAGGG---ACTGAACCCAGAGAGACCAAGGGTTTGGGATGGTATTTTCAAGTTCTGGCCAAAATGTGGGCTTCATGAAAAGTGGAAAACATAATACTGGGACAAGAG-TTTTATTCTAAAAATGATACACAGTCTTTTGTTTATTGGGATAGCTCTGAGGGCTGTATGGAGATTGAATGATCCCAGGAAAGAAAGAGTACTACATAAAGGAGACTAAGGGAAGCCAGTGTACATTGTGATATGAGACTTTGTTTTACATTTTCCCATATTCCAAACATAATTGCAAAGAATATGATTCTATGCAACTTTTTTGAGATTCCTTTTTAAAGAAGTTTGTTGCTAGGGAGGTTGCCAAGGAGACTGAGCAAAGCTTAGAAAATGAATGACTTCAGGATTTTTATGTAGACTAATTTAAATACCA--GAAAGGTGCAGCCTG-AGTGCTTTAATTTTACAAAGGGGGAAAACATGTGAATTATTAAATGCCAGTGAAAAGGatatgctatatgtat-ggtatacttgtatgtacatacatatttgtata-----------atgtgcataatatatatgtgtgctgtgttgtacata
s HiC_scaffold_1 146286016 2951 + 233722169 AGGTCGCTTCAGCACCTCTCTGCTTCACCCTGCAACGGAATTAGCGAGCCACCCGCTGCTTGTTCCCGCCTGCTACTTACAG---AAACACAGAAGCCTCTATTTCAGCCTTCCTTCTGATTTTCT-----CTGTGAACCTCTCAACCATTTTGCTTTGAGTTATTCCTCCCGGTGTTCCTGGGCTGTTCTTCTAATAAAAACTCTGacctcttccctttccctcagCAGAGTTGTGTGCTTGCTTTTTTCAGTTTGGCTATGAGATTATTGACCACAAAAAGGATAGCGAAGGGATAACAGAGATTATCAAGCCCTAATGGCCCAACTGGTATCTACTCATTCTGATGTACCTGCCTGACTCTGCTCATGGAAAATCTATCCCTGGCTAGATacgtttttttgttgttg-------------ttgttgt-----tgttggtttttttttttttttttttttttttttttttttttttttcttatttagagG---CACTGAAGTTCTCatatcaagaagataaaaaggaa---------------------------------agcaTAGCTTTAGGC------------------------AAATAACTGAAAAGATCCTTCATTCCTTAGTGTAAc-------cctttaattcttattttttaaatttaaaaatggatctGTTTCCTTGTATGTTAGTTTCTAACACATAGTATGGGGCCAGGAATACCTTACCCTACTACTTCATAAGCTGATCCAGGAACTCTAACAGGAAAAGG-------TAAAGCAGACTCACTGGAGCCTAGGTTATGTCTGGTGCTAG-GATCCTCTGAGCTT----------GCCTTGAGGTGCCTGCTTAAAG----------CATGGCACAAATGTGGCATTTGATggaagaagacaggaagaaaatgtagtataaaGGTCACTACAGTGAAGTGTACATTCCACTTTCATGCAGAATGCAGTTCCCTTCTGTCACCTCAAGAGTCAATATAGGTATCAGCATTG------CCATGGTGAATGGAAGCACCAGAAAGCATTTGCACAGTAGTGTTGAGAATAAAGAACATCAGCAAAACCTACCAGAATAAACTGAGAGAGCAAACAATCATCTTTTTTTTGTGAGCACAGTAACCAACACACAAGATGGCGAGACAGGTCAAATATTTCCTTAGGACTTACAGAAAGCCTGGGACACA----------------------AGAAAGGTGGTGCCACAACAATTGTTTTAAACATTAATATA-ATTGATTTATAATTCAGGGAAGAGA-AGTTAGATTAT--------------TTATATTAAAGGGTTTTGCAAACTACAAAGTTTTACACAACAGCACAGTATGCTTCCTCATATGCTTTTAAAACGAGCAAAACCTATTGACATGT-CTCTTTATTTTAGACACAAAatttgaaaggagaaataaatatgcAGACCTATATATTTCATGACATTAAGGTGCAGATGTGTGCCATTGTTGAAatacaggaggaaaagaaaaaagaaacaggttgctATGCGGTAcatttctcctgaccaggcttcTGCCTATTTTTAGACATGTGCAGGAGGGCTGCACTTGAAGAGCTAATTAAAGAGCAAAGAGGAAAAGTCAATGCTGAGAAA-ATTCTTTTGATTAAc-tttacacatttatttcttcTGGAATAATCTGCATCATCCGTAAAGC---------------TCTCTCAAGC-CCATTtctgggaaaggagaggaggtaCAG---TCAAAG-TACTAAAGAGCCATTCCTCCGCTCTTACACAATCCTCTTTTGTCACCTGCACTCAGTTTTAAAATCTTGGATACCACCTGTCTGGAAGATGAATTTCACTTCAACTCCACTATGCTGAACTTTGTCCAGAGTTAAAGCAAACATGTTTTATGCATGATCTTGAAAGCTAGATGAATGCAAGGAGCAAAACCACATACACAAAGCATTCCCTGCTTCAGCAGACTAATTATGGGGAGCTTCAATTGTCTTCTAGAATCCCAGTTTGGTTCTTAAATTAAATCTGGGATGTCTCTAATGCTTAAGTATTTGGTTCTGGGGTGCAGGCAGTGCTGGGTTCTGTTCTCCATAAATGTCATTCATTTTATCAGCACTCTCCAATGCAAACAAATTACTCAGGAGAGCCTGACACATGGAAAGTAGCAT-CAAATGCAGGCAATTAAGTCATTTAATTTATGCAAGCTAACCCTGTGCTAAGTGATAGGAATAAAGCCATGAAGACAAAAATGTCCCTCCCCTCATGAAAATTC-----ATAATAAATGCACACACAAGACAAGATGGAATCTTTGATAagattaaaacacatttaaaaataatacagttcAGTCTTGGCAGTC----CACATGAGGAGTCCCCGTACTGAATATGAGATGGTTAATGTCACATCAAAATCTGAAggtggcatggcccaggcagagAGCACAGCAAATGTGCAGGCCTTGAAAACTGGTGATAAGAG----TTGGAGTAACATCAAGACAAAATAACCCAAGCCATGAGGGGCAGAGAGAGGGCCACCTGAGCTCAGG-----CAAGGGTCTTGGTTGG--TTTGGAGGCTCTGCTCCAAATCTGGGTTGCTTCAGAATTGAAGCCCAAGTCACTGGGAAGAAAGATTTTGATAAGAAAATGACACAGACTGACTTGTGATTGGAGATGAGTCAGATGGCCATTGGG-------------CTAGCAAGGCGCAGATGCCGAATGATCCAACCATAGAGGAGTCAGACTAAATTGTGATGAGAGA---TGCTTTGTGCTTCCCAGTTTGT--AGTATAATTGCAAGGAATACAGTCCTGGGCAACTTTTTTGAAACTCCTTTTGAAAATGATCTGTTGCTAGGGAGGTTGCTATGGAGACTGGGAAAAGCCTGGAAGATTAGTgacttcagcatttttatgaagactaatttaaaaaatatcaagaggTGGAGCCAGAAGTAGTTTAATTTTCCAAAGGAGAAGCATGTGAAAGCTGGGAAAGGTCAGT-AAAGGGAC---CTATGTATCTAagtgtaaatgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgttgcatgtaTGTGTATTTTGCTACTCATA

a score=20822
s chr3           159025493 1430 + 160039680 AATTTGTTTTGATC-TTATGCATTTAAAAACAAAAAGATTGAAAGAAAAAATCTCTAAAACTGTAGTTGTTATTTTATTTTCCAGCACTATCACTATGACAATATCTTAGCAAAAGTCATGATTAGTTAGAGACTAAATTAGAGCAGCTTTGAC--AAAACTGTGTCTGATTGACGTGGACAAGGAGGGAGGTCAGCAGAGCCTGGCATTTCTACAGAAGATCCAAGTGCTTTCAAGTCTTCACATCCCAGTGCACTCCAAACCTCC----------------------ATAGTTTTCTTTTGTAGGAGACTGGCAATTGGCAATTTTCCTGACATCACCGTATGACATTTTCCTAGGTTTGCTGTAAAAAAAACTAGGGCATTGAATTGCATGCTTTCCCAAGCAATTTCCC-TCTAACTCATAATAAACAAGGTGTTTTGCACCCTTCTTCACTAGATATAT----------------CTCAAATTTATAGGTTTTCATCAACATGATTCCAAATTCAGAAACTCTATGAATGTCTA----TTTCACCTCTATTACAA----GGCTTATACAAATTAAAACAAATTTTTATTCTAACTGAAGAATCATCACATAT-TTTTATTGTG-GATGGTAATACAGTGAGTTTAG---TTCTTTTCATG-GCTTATTATACTTCAGGT------------------------------------------------ATATAACTGATATACA--------TTCACATCTCCATGCATCGAAAGCCATTTTGTTTAGGGGTAATTCAGCACAACTAACTCTCAAATAATGCTTACCTGTTCCTAAATCTCCAGTCTTTCTTCA--------------------------------ATTTTGTAACTACTATATGTGAATTCCATGT---GGATATACAATTTGATATGACTTTCTGAGATTACTGATATTAAGATT-TGATATAATACTAGGCTTCAAATGCTAAGCCTATAATAA-GACTTCCAGCTATTATTGATGTAGGTAGTTTAGAGACAACACTGAAAAAATTC--TTATGAAATTTTAAGAAATGTCTCAGCACTGTTGACCTGGTAACTGTGTAGCCTTCTT--CTCCCTCTCACAATAGTCTATG---ATCTCCATTC----CAGAGTACATGGTCCAAGCTCTGGTCATTCTCATTACATAAAGTGAAACAGGATTCCCTAAAGATATTTCAGA--GTCTGAGTGATGGGATGACTCCCCCACCCCAGGTTCAACCATCTAATCAGGACAAACCTAAGTCAGGATCAGAACTCAAGTTTAGACATAAGGATTAAAGTGTCTGAATTGATTGCTTTGCTGCACAAT-CAAGATGAATAATTA-TAGAAGGAAAAAAAGATAACCAGCTTTTGAAAGTATTAAAGAGAAGTAAAATGTCTTTCTTTAAGATGATGAATATGGGTAAAACATGAATATGGTGAAAGATTTTTGGCTGAATCACATCAGATGATTAGAGTGCTTGTTCAATGAGTACCTGGTGTCTAAATTCTTACCAAACTTATCCATAGAAGGAGAATTGATATGGTAAGC
s HiC_scaffold_1 146294285 1504 + 233722169 AATTTATTTTAATCaggatatatttaaaacaaaaatga------agaaaaatttctcaacatgcagttgttattttattttcaggtcCCACTTACCTGGCCAGGTCTCAGCAGAAGTCATGATTAA----AGTCTATATTAAAGCAATTTTCAACAAAAACTGTGTTTGACAGATGTGGGTATGGGAGGTGTCGTACAGCTCC-AGCATTTTCACAGAAGATCCAAGTTCTTTCAAGTCTTTATATCCCAGTGTGCACTAAACCTCctaagtataagaaaaaaaaaaaaaaagctttctttt-------cctGGAGATTGGCAATTTCCCTGGCATTGCAGTATGACATTTTCCCAGATAGCCTGT--CAAAAACCAGGGCATTGAATTGGGCACTTTGCCGAGCAGTTTCCCTTCTGACTTATA--AAACAAGTTGCTATTCCATCCGTTTCCCTGGATTCACTCAAATGTCACCTAAACTCAAGTCCACAggcttttattaaaattatacaaaatgaagGAATTCTAAGAATACCTATGATTTTTACCTCCATCCTAAATATGGTCTATTCTAATTAAATCAGATTTTGGTTGCAAGGAAAGagtaaaaatgtgtattctgctcTGCGCTGAGTCTGAAGTGAGCTTAGGGCTGCTGTTCATGAGCTCAGTGTGCTTCAGGTTATGGAGGAGCTCAAGAAGGAGAACATAGGTGACTGGGTCTAGATCAAGTGCACCTGAGAAACAAGTACAGTTTCAATCCTCAACCAGTCAAAACCCATTttgtaaagag-------aagaaaattatgtCTGAGA-ACCTCTGGTTTGTCCCTCCCTCTCCAGGCTGTCTGCAGAGGATTCGCTGGGACCATCTCCTGGGTGACCATTTTCTAAC-ATCAGACAGCAAAAGCATCTCCCGGAGTTCTTGTGACATATGAATTATGGCGGCTTTTGAAACAAGAATTCTGATCCAAGGTCAGGCCTAGACAGCTGTGTTCACCAGAAGGACACTCA--TAGAACTGACGCTGGTGATTCTAAGATGCCCTTCAAGAAGCACAGCTATAAGGACTTAAGGAAAGACTCGGTAGTCTTCTCCACGAGGAAGAGGAACTTCTCTACCTGTTTCTCAGAGAGGTCTATGGTTATCATCACTCTAAACAAAGCTTGGGGCCCAAACTCAGA--ACTCTCAACCTGGTGTGTGCAGGGGAAGCCCCTGTGGATCAGTCAAAAGGCCCTACAACTGggcttttccttttac------ttttaccCTTGA--------GAACTAAGGTCAGAGTC-TAACTCCAG----GAAGTTGTTATCAA-----TTCCATTAACTATTTC------TAATGCAAGACTCAGAATTATTAGAAGGAACTGAAGATAATAGGCTCTGGAAAACCCTTACAGGACATAGAA--TCCTACACTGGGATGAGGACTGAGGGTAGA------------------AGTATTGGCTGCAAGCAATTAGGT-----GAGTATTTTCCTACTGACTACTTGATTCCTGTCTATCTACCAAACTTAACCAATAAAAGAAAGTGGGAATGGAAGAC

a score=41974
s chr3           159028955 3681 + 160039680 GTTGAGGATGAGATGGGATGGAACCAATGTTCCTTACACCCGGGCCTTGATCACATTTTATGGCTGTGCATTTCTA-TGTTGTGGGAGTTTGTATGCAGAACCTTCCTTTTTAGACATTTAAAGTCTCTTAAAGCTA--------------------------------------------AGGAATTATTTCTT-----TTTTGCTTTTGATCATGTGATATTCTCAAAGCAGTTATAGCCAAGAAACCAAA--------AAGGACAAAAAGGAGTAAGAATACAACTAGAGACTTGATGTGATTAACCCCTCCAAATTCCATATGGCAAGAAAATGTTGGGTTATGTTAGAGAGCCAGCTTGATA-----GAAAGACTGGGAAGTGATCACTATGTGTATAACAACAACAGCAAAACAAACAAACAAACTCCACAAAACTAATACTCATTAAAAAGGTTATTCTGTGGGACACATGGTAAAAGCCCCTGTCATCCTGACTTTTGCTTTG---------GCTAGATTTCTTACCTTTTTAATGTTTGGAC-AGAGAAAGATACAGGAGAAGTTCATTTTAAAACAAAACATTTTTCC---CTCAATAATTGGCCTTCATAAAAG---CAGAAAAATTTGTAAAAACATAAAACCATGTACTAAATTGAGTAGTGTAAATATTGAAACATTTTACAG-TATAGCTTTGTGAAGCA-----AATAAATTAGTCCACTCCCTTGCCTGA-ATTCCACAGGAATATTTTTAATCAGTGGTGGGTTTCACATTGTAATATCAAAATCAGATTAAGAAGGCTACA-----TATTTTAGATATAAGTAGACTTATATCTAAAGTTTACTCATT-AACCTCCTTGATATTATTAT-ATAGAGATT-TAATTATCTATTGATGATATATTAAAACGATATGCTTTTG------------AGTGCATTGTTTTTATTT-----CTATAATGAGTATCTGATA--------------TTCAGT--TTCTTAAACGAAGTCAATAAAGATAATATAAATATATGTTAAATATAAGTGTCTGATATTTGCAATGAG---------TAATA---ATGACCAATTAAATTCCAACTCAG-GCAAATATACACATATT-TATTTCCCTGCAGAGTTTACTATGCGTCCAGTTGGAACAAGAAGTTGACCGGGGCAGCCTGCAAGGCCCACACTATCTT---GGAAAAAGAACATTGGCCATCCCATAGCAGTCAGGTCTATCTCTTCCCAGGCTACACACATAATTTGCATGAGTAGGTGGCTTAAGCCACTTAATCAA-CATGACTCATTTCCTCCCCAACATATGAATCAAAAAAGAATAGCACATGAACACACCCCCAGGTCTCAGTTGACTGATGCTGGTCTCC----------AGGAAGCACAAAGCAAACATTCTACTTCATTTCAGAGGAGGAATTTTTTTTTTCCTGATGGAAGTACTCTGCCTCTCCTAAAAACTGTTACAGTTCAGTTAATGGCCAAAATTCTGAAACTATTTGTTTTCTCAGAAATTGTTTTAGTGAAATAATGTGTTCCAAGTTGACAAATTTCCTTCACATGGTTACAATTTCACGTCTTAATGGTAAGAAATCTTAGGAATTATACTTTTGTATATACATATTTAATTTAAAAGTGTATAATATCATACTTGTCTACAAAGTTCTGTGATAACATGCCACATTCATCCTCCACTGCCCTCTAATTCTGTCTCCTTCCTACCTATTCCTCTTCTTTTCCCAATATTTCCCCTCTACTATTTATGCCCTTCTTTTCCTTTCTCTTTTCTCCTATTTTAGAATTCATCATTGAAGCAAAAAAACTGAACAA--TGGGAAGAATAAAGTGCGGCTTACGGGTCTC---TTTTCTG--------------CAGCTTGGATACTCAAAAAATGTGGTCCACTCTC--AATAGTTTCTTCTCCTACCTCTTTTGTGCCTGGGTGTGATTTCTGTCTTTGCAAGCAAGCTAGAAATAGCCTC--------AGCTGTGCATGTGCTTGTGGGGGTGGAGAGAGAAAGAAGTGATGTGGAATAAAAAGCAA---TGGAGGCAGATGGGAGCAAATCGCCCCCACAATTCCTTGGGCTTAGAAGGTTGTACCAGGCACTGTAGATCTTGTGCTGACCATTTC--AGTCTCCCCAATTCTGCTCATCATC-TTGTAATTCACTGCCACAATCTCTACCCTT--TTTTGAAAGCAAGTAGGAAACTGTTTTGGAGGAACTCTCATAGACATGGTGAGTGCTGTAAAGCACAATACCTACTGTAATTTCTCATATGCTGGTGATCTCCAGAAAAGCTCTTGATAAGTCAGCAACTTGTTCACATAGAAATCAGATTCATCATCAAGAAAATACATGGGATG-TAATGAACACTGTTCATTGCTGTCAATGCTAAAAGCAGCGTCTCTGAAAGTGTctccctccctccccaccctttttcttcctttcttttctttctctccccttcatttctccagatctctctttattttctttctttcctttcttctcccaaccttccctcccaactctctccttcccactctttattcctttatctcttcctccctacttcactACTCCATTGGAAAGGCATTTCCCCACCTCCCTAGGGTCTTTTTCTCTGTAATTTTAGACTTTAATTT----TTCTAGGATTGGATTGTTAACCATAAAGCACTATTTTTAAAA-------TACTTTTCATCCTTAAGCATTCCATCTGAG--TGAGTATAGGTGT-----------GTGCATAGAAACCAAGAGTTTACCCCAGAACTTAAGGAGAGATGATCAGGAAGGTAATCTTACGACCACCACTGGTATCTGCTGTTTTAGAATTAAATTCCATTCAAAATACTGAACCTTGTGTAGGTGGAAAATGGATTGGGCAGCCAAAAG--ATTGAGTGACTCAGACACAGCAGCCAACTGTGAGGAATGGTTACCAAGCAACTGTCTCAAAGGCTTCCTGGCAGTTCCCTAGAGGATGCTTCCCTAGAGGATGCTGCCCCCTTTCTAGAGAACCCTTCTTTGCTCAAGCTGTAGTTTTTGACTGCAATGTATTTTTCCTTT---TGTTTACTCAACCTGTATCCTCTGCCTATGACGCTCTAAGACTGCCTTGCCCTGATACATTCTGCACACGATGATGTTAGC-CTCCTCTAAG----TTCCAAAATTTCATCTACATTGTTTCATCATAAACTGTACCTAACCTATGCTAAAATCTCTTGATCACTTGAAGTAATTTTATATTTTAGATTCTCTCTAGAATCTAGAGT-GTATTTTTATCACACTTATTTTTTAGTTATTTAGTATAACA---ATAAATCATG--ACTCATAG-----------------TTGAACTTGAACCATCTTATGTAAGTTTTGTTATATTACTTTAGATATGGCTATATGGTGTT--AAAACAAAATAATCTGCAATAGAAAATTCTTGCTATTCA-----TCACCTACC----TCTCCTA----CCCTACCACCATTAAATCATGAAATTGGTGATGGGAGTCTCTTTAGTTTACAC------ACTTATC----ACctgggatggaaggat--cacttgagtcctcaagtttgagaaaaccctggaaaacagaaaaatccttacctcaagaaaccaaaaac----aaacaaatgaacaaaatcaatcaaccaaccaaccaaaccaatcaaccaatcaaacacataaacaaacaaacaaacaaaAAACCCTGCATTTTCTTTCTAGCCTTTCTTATAAT-CTATTACTTCTTTGAGCAAATCAACACAAAAAATAATTGTGTA---GCTATTTCTCAAATCACAAATTGGCCTTCA----------TGTCACTAAATAGTGAATTAGCCTATAATGGGAAGAA
s HiC_scaffold_1 146298487 3265 + 233722169 GTTAGGGACAACCTGGAACTCCAGCAAGGTTCCTAAGATGTGAATCCTTCTTACACTTTGCAGCTCTGCATTTTCAGTGTTGGGCGAATTCCTAAGAAA---------TCCTGGACCTTAGAAGGCTCCTGAAgctataggaaaaggaaattgacTTCTCTTACAGCCCAAAGCAGAACCCAGGAATTGCATCTTAATTAGTTTG-TTTGGGTCATGTGAT---CTCAA------TGTAGCCAGGAAGCTGTAGTTCATTGACGAACCGAAGACAGTCAGGTCCCTGCCTACACCTATGCGAGCTCAGTCCCTGCAAATTCCTGGCAGTCAGAAAATAGAGGGGTGTGTTAGAAGGACATTTCGATGCTAGGGAAAGGGTAAGAAATAATCTCCAGGTGTG-------------------------CTGACTTCA-AAATCCAACCATTGTGAAAACTGTAACTCTGTAGTAAAC--TGCAGAGCACAGTAGCATACTGTCTGTTACTTTCCTTGCTATCATTGAATTTCTTACTTT----GTGTTAAGCCCAGACGAGGATACACTAAAATTtttgcataaaaacaaaaattaacctgTGATCAAGGATTGAtctttagaaaagaaacagaacaatttGTGAAAATATAAAGTTATGTGCTAACTGGAGTAGCAcaggt-ttgaaatattttaaatctctGTCTTGGTGACgcattatgaataaaatattctatcTTACTGCCTTATATTACataggaatatttttaaacaatggtgGGCTTCATGGTGCAATTCTAAAGTCAGATTCAGAAAGCTATGAGCATTTTTTTAGAGATAAGTAGCTTTAAGCT--GAGTTTACTCACTCAACCCCCTTGTGATTATTATTGTAGAGATTATAAATATCAACTTGTGGGATATGGAGAAAATATGGCCACgcacaaaacaaataataaatagccATTAGTGTATGACAATAATTTGTGCCTGACAACCTGATTTGCCATTCCAGCAGTTCCTTCATGGAATCAATAAAGATCGCATAAACATA--------ATAGTT--TGGACATCCACGATGAACCAGAGTTCTAATACACACGTGCACATGCTCCCCCACACACCTCAAACACACAAATACTCTCCTTCTCTGTAGTGTCAGCTATAGACCCAGCAG------------------------CTCTGAGGTCTATAGGACCTCCAAGGAGAAAGGACCTTTGCTGTGCCATGGCAGTT--GCCTTCATTTTCAAAGGCCACACACACAATTTGCATGAGTAGGTGGTGTCAGTCTCTTAATCAAATGTGACTCACTTCTTCCctaatatatgaat---aaaaaaatagcaCATGCCCAGACCCACAGGCATTAGCAGGGTAATGTCTTTCTCCCACAGAGTAAAAGAAGCACACATTAAACCTTC-AGTAGACGATAGGGAAAGAGTTGCATGA-----GATGGAGGCACTCTCATTCTTTCAGGAATTCCCACA----------------------------------------------------------------------CAAGCTG---------CTTCTAATGATCACAGTTCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTT-----------------------------------------------------TTAATCACTGAAGTAACACAAGTCAATTGCTTGGGAAGAGCCCAAGGTCACCTGTAGGTCTCCGTTTTCCTGGAGGGTCCTCCTTTCAACTCATTTGCTCAGAAC-TGTGGTCTGCTCCCTTGGCAGTCTCCTACCCTAACTTTTGTGTGCCTGGGTGTGATTTCTGTCTTTGTGAGCAAGCTGGAAATAGCCTCCCTCCCCAATGTgtacatgtgtttgtgggggtggagagagaaagaggtagAGAGAAGTGAAGAGCAAATTGGGGGGAGGGTGAGCGAAGGCCGCCCCCACA-CACCCCAGGCTTGAGGGTGCGCACAAGGCACACACTAACCTGAGACATCCATCTCTCGGACTACCCACTTCTTCTGGCCACCCTTATGAATCATGGTCTGAATCTCTGCCCCTGCCTCTCACCGCAGGCA--AATCTGTTTTGGCTAGAATCAAATAGACACCGTCACTGCTGCAAAGTACAACACCTACTGTAAGTTCGTGGGGGCTGGATATCTCCAGAAAAGCTCTTGACATTTTACCAATTTGTTCACAAAGGGAGGAGACGTATCATAAAGAAAACACAAGGGGTACTGGTGCAGCTCTACCTCCACTGCCAAGGCTGGA-------------AAAGGGTC------------------------------------------------------CTGTGGGTTTGCTTtccttttagctttttcttttcttct---------------------------------------ttttttaatat------------------------gtgAAAGTGCTTATTCACTCCCTCCTCTGAGCCTTTTCCCCCTCGTTTCTGAGTCTCATTTCTTCTTCTAGAGCTCAGTAG-TACCCATAAAACAGTACCCACAAAGTCAGTTCTACTCGTCACCCT--GGCAGCCTGCTTGAGCTTGGGCCTGAGAGTCCAGAGTCCCCCTGGATAGGAATC-AGAATTTACCCCTGA---------------CTTAGGAAGGTAGCCCTGAAATAAC-----------------TTACAGTCCAGATTTAGACAAAATGCCCAACTTCATGGGGGTGGAGGA--GATTGGGCTGCCAAGAGTATTTGAATGATTCAGCTACAGAGACCAACTGTGCTGGGTGGTTACCAGGCAACTGTCTCCAAAGCTTCCTGGCATCCTCCTC-AGGATG--------------GCTCTCTCCTTTCCCAACAGCACTTCTTTGCTGCAGTTATGCATTCTGCCTGCAA--tacctttcctttctgttctttttcaaatTCTATTATCT--TTGTGACTCTCCAAG----------------------------------TGTTACCACTTCTCCAAAGCCTTTCCCAGAGCTTTGCCCCATGGTTTTGTTATAGAATTTAGCACATTTGAGC-ATAACCACTGCTTCATTTG-------TCTG---TCCAG---CTTTTGAGAATCAAGACTGGTATCCTCAGGACACTCA---CAAATTCACTTGGGGTAACACTGATAACTTATGTAACCTCTAGAGCATCACGCTGGAGCACTGAGCTGGAAGGGTGTT-TGCAGgtttttgcttattattttggATTTGGTCATATTGTATTTAATACTAAAAGAGTGTGAAACCAGAAATCAATGCCATCCAAACTGCTATCTAACACTATCTCCTGAGTCCGCTGCCACCACATAAT--------------------TTTTACCAGTTTCCCCCCATTGACCTTTcctgaaccaggcatggtgacatgcCTCTGAACTCCTACTACTTGAGTAAATCCT----------------TTGAGTCCAGGATTTCAAGATCTCCTAGACAACAAagcaaaatc-------------------------------ttaaaa----aaaaaaaaaaaaaaaaaaaacactcagcaCTTCCCTGCTGACTTTCATTCTGGTCCCATTACTCCTTTGAGGAAAACAccaataaaatgtattatatctattttatttgcCAAGTTGTAAAATGGTGACCATCCCGACTGGTGTCACTGAGTAGCACATCCATCTAGATTGGGATGAA

a score=32794
s chr3           159033200 1930 + 160039680 AATAAATGACAATTTAAAGGATGTATTACTACTTCTAATGAAATATATT-CTACTTGAGATTCCCTTTAAGTCCTTTTTGAGGAGTTTCCACATACTGTCTGCTCT-TTAGAGAGAAAATAGAATAAGTTCCAGACCCTAAAGCATGATGTTTCAGC-CCATTTCTGTTGTTATTCAAATAAAGCTTTTGGTAATTATCATAGTAAATATAAAGATAATCATGTGATTATTTTGTACT-CCTTTATTTTTAAAACT-CAATGTGAATTACAACTTCTCATTAAACACTGTTATATACTAAGAATCACATAGTGCTTTATGTATGTAGTCTTATTCATATTCATTATTATATGAGGCCTGACTGAGCTTGCGGGGGGGGGGGGGGAGATGATAGAAataatgatgatgattgatgttgttgttgttgttgatgatgatgatgatAACACATGTTCCT-GTATCTATTGACAGGTTCTTCACTCTTGAGGCAAATGATACTGACTTTGttttgcagatcgggtgaatgaggcactctgaaggcaacagtctgcttggttttatacagctcagaaaatgcaaaattagattctgattccaaatcttgttgcaaaggtacaagctcttaaccaaaatgc-cctgctgtCCTACAAATATCTTTTGCTGTGCTTTTTCATATGT----TTGTCAGAATGGAACTGTGGACATGAAATGAGTTAGAAGTAGTATGTTGTTATTTATATGTTGGATCGAATCCACT--------------CTTTCCTATGAAGGCATTGCTCATTTCAAGGGTCAACAAA----------------------------ACATTGTCA-----------------------------------------------------------------------AATcctgtaatttt------gtagagaaagtttggcaggatgg--------------------------------------------------------------------------------------------------acgcagccatagacatttgtt-atatattatcttggct----aaatc---tggaagaatcaagcagctgcaacagagactcatataacttgtaaaatctgagatatttattatctggtattttacaagaaaat--ttggcaat------tcttAAATTA----------CTAATAACTGATACACAACCTCATATTTCCTGTTTCTAAACTAACCCTTGCTGTCACTGATAGTCAATTGAAATGCAATCAATAAACAAA--TATGTGGACTATACTTGTGATTGAAAGGTGCTTGTTGTCACTGGTGGTGATTTAGACAGAGAAA-TGGAAGCAATGATAAGTCATTAATCAGAGCTGATG-GAGCACCAGCTAACAT-AGAAGGACAGTTTT-CTGTGGCCTGAATTTCTC---CTCAAATTTGAAGTGAAAGCTCCTTT----ATTTTACAATAGAAATCACTTAGAAAATGTTTCTTCT--------------------------------------------------------------------TTCTGAGGACCCTACCATTCAATCTTGCAGGCCTTGCAGAACATTATAGCTTATGA-AAAATCCAAATGAACTAAGTCTAATGAACTATCTACCTTCATATTGGAAGGTGCAGTATGAA-----AAGAGCTAACTGCAAGTCTCCAAGAAGCA-CTGTACAGCAAATGAAAAATTGGGGGTGGGGGTGTGCTCTTCATTCTGGAACATTCAGAAATTTTATTTCAA-----CCTTAAATCTCATAATCTTGTTCTTAAATACCAAGCATAAAATTGCCATAGCACTCACTGTGTTCTTACCCTTGAGAGGGACATTCATTTCAAGCTTCTGATTTTGGTTTTATGTAGAGAGC--------------------ATGTAGAGAACAATGACCGCTCAATTATCTGAAAGGAATACTGTGCATGTAGATTTCCAAGACACCCACACCCCAGAGATAACGCCAGGGAGCTAATCAAATGCTTTTCTGCCTGCACAACTGTGATACCCAAAGCTGCTAGGAGCATCATTTTTAGATATCCGTGGGAGGGATTCTTTTT-GTAATTCCACATTTCTTCCACTCCCACCACATGTCTAGGCTTTGCCTTCCAGA--GGCATTGCTACACTTTCAGAGATTTTCCTTTTTC-TCCCCTACCTCGTCTTCCCTCCATACCATCCTCCTCAC-CTCTCT
s HiC_scaffold_1 146303876 2164 + 233722169 AATATATGTTAATCTACA-----TACCACCACTTTTAATTAAACGTATTTCtatttaagtttcactttgtg-cCTTTTTAAGGAGTTCCGACACAAC-TTTGCTCCGTTTTAGTGAGCACAGAATAATCTCTGGAATTGGAA------------AGCTCCATTTCTGTTGTTATTCACTGGAAAGCTTTGGCAG----------------------AAGGATTTGATTATTTGTAACTTCCTTTATTTGTAATATGGTACTATGTATAATAGttattcagtaaatattattACATATTAAGCATTGTAA---GTTTCATACATGTTCgcttattaatatttataacta----aGGTGAGACCCAGTATGTAGAaggaag----------------ataataataataattg----------------------------------cattTATTCCAAGCATCTGTGGAAAGATCATTTATGTCGGGGGCTGACGTCGATACCTTCACTCAGATGATTAAGAAGCTGAAACACAACCAAGATAGCCCTCTGCCCAGTATCGTACAGCTCACAGACAGCAAAACTGGAATCCAGTGCAGCATGTACTGGTAACCGCAGGGCATCACAGCCTTAAAGCACCCGCTG------------CTGCTGTTGTATTTCTGCACATTTGCTGTGTTCAGTCCAAGACTGTAAAAATACAAACATGTGGTAGCTGTCAGTCTCTGCACTTGCTTTGGG--AAATGCACAGTGGAAATGTACAACCTTCTACTAAAGACACTGGTCAGTGCAGAGATCAACAAACCGTGTCCCAGCCATTGGGCACAGCAACATGTTTTCACAAAGACAGTTGCTTCTACTgcgtgtagtggcacatgcctctagTACCAGcgctctgggaaactgaggaagaagcACAtaattctagcccagcctgggaagcttAGCAATGTGGTGAGACACTGTCTCTAGATACAAAGGGCTGGAGACATATCTCAGTGCAAAATCACTGGCTTCAGTTTCCCGGTACTGGGGGAAAATGTTGGCTCTTGAACTCAAACactcccatttatttatttgttgtctttgcttttgaaataaaatagtagaCTCAATCATTTTTAACAGAGGC-CATATGGCatgcaaagcctaaaatatttatt---tggacCTATATAAAAAAGTGGTTACCAATCCAGTGTCTCAGTTTAAGCATAATATCTACTAACCAATACACAGATTGGAATGTGTTATCAAAAAATTAGCCCTTATACCCATTACCAGTTGACCAAAATGTGACATAGAAATAAGCCTAACTGGGC-ATTCCTATGATCTAAAAAGGGCTAATATTGTTACTACTAACCcagatagagaaaacagaatcacTGACACATC--------GAGGTAATAAGAATATCAAGCCACATTGGAAATTCAGATTTACTGTTGccatcatttcttatttttatactccagatgaaaggtttttttttaatttggcctTAAGAATAACTAAAAGATTGCTTCTCATGCAAGCACAGGAAAGGAGCATGGCAGGACAGAGATGGGTTAACTCCAGCAGTGCGTCTGCATCATAGTTTGTGGAGATGCTACACTTTGATTTTGCAGCTTCTGCATGGCACTCTAACTGGCCATGCCACTTAAACGAACCGAGTCTGACTCACTGTGTAC--TCAGCACTGAAGGAAAACTACAGATGATCAAGAGCTATCAGGAAACCTGCAGGAGGAAACAGCACAGGGAATGAAGCGT--GAGGTGAGG-TGTATTCCTCGTTCTGGGACATTCAGAAATTTCATTTCAAGTCAACCTTAAATGTCATTATCTGGTTCTTAAATGCCAAGCACAAAGTGGCCTCAGCACA----GCTATCCTGACCTTGAGAAGGACAAATTTTTTCAGAGTCCGACTTCAGCCATTCATAGGGAGCTGAAGGGCCACATGTGTCGCATGTAGA--ACAATACCCAGTAGCTCATCTGAAGGAAATGTTGTGCATGCAGATTTCCAAGACACCCACACCTAAGAGATAATGCCAGGGAGTTAATCAAATACTTTTCTGCCTGCACAACTGTGGTACCTAAAGCTGCTAGGAACATCATTTTTAGACATTCGTGGGAGGGATTCTTTTTCATAATTCTGCGTTTCTTCCACTCCCACCACATGTCTAGGC-TTGCCTTACAGACTCACACTGCTAC-CTTtcagagaattttctttttctttttctttctttccttctttctttgtctttcttctttctctctct

a score=26530
s chr3           159051407 1186 + 160039680 AACTTTTGGTCTTCTTGTCGTTTTATTTGTGAAA--TAACACCATACTGATCTGATAATCTTACTCAGAAGCAA--AAACTGACT-TTCCTTCCTGGATAAAATACAGCA-CTGGCAGCTTTGACTTCCTGGTTGCAGTGTTG-GTTTTATGTGC-TAATC-------TCAACAAGCAGAATCTAATAGCCAACTGGGA-CAAAGGATG--------ACAAGGGTGA-----ATGTGGACCAAGTAGC------------ATTAGTAGTTCCTTTGATCTTGTAAATCTGT----GTGAATTTATGGCAGAGCACAAATTATGATAAAATCTCTATCAAATA----TTTTTAGGGTTTAGCAATATGAACTGTTCTGACCTGTAAAAGATTGTTTCCCTCCTTTCTGCATTCCCCCCTTCCATCTTTAAGAGAAAATCTTGCCTTCCAAGAATTTAACA-TTCAGAAAGATAAATT-------TCATCTGTAGCTCCCTCAATCAGCAAAAATACTCTGGTACATAG-CTATGGAAACAAAAGAGGAAAAAAAAGCAAAGCAAAACAAACAAACAAAAATAACTTTTCAGAAATTCCTGTCAGCATATTTAGCAGAAAGAAGAGAGCACTTTCTTTAGCT-----TTCTAC-------TTCCTCTGCTGTGTGGAGGTTAGCTAGGGAAGGCTTGTAGCTGAAGATGGTGAGTTATCATTCTTGGAAATCATTTGCATTTATATAGCACCTCTTATAGGAGTGAATCAAATCATTAAAGCTATTACACTAACAAATGCAAGGAGGCAAGTACCATTACCTCC-TGAGTATGCTGAGGCAGTGGAGTTCCCCCCATGAGCCCAAAGAAAAGCCAATTAA----GCTCAGGTCTCCTGTATGCCTCCAG-GACCCATATGATTCCCATGGTGCTTAAGGGCCTTGAGACAATTTCTTTAG--CACTGATAAAGTAATTTCTCAGCCTACAATTCTGAAATACAATTTTCCAAAATTGTTTGGAGCCCCTTATTTCATATTTGTCTCCAAACTAACTTGTTTTCCAGAGTTCATCTCTGAAGGACTAGAGTACTTCC---------------------------------------------------------------AAGGGTAAAACTCCTGAGATTAAGGGTATCCTG-TATTTTGTTTTAGAATGTCCGTAATGTTCTTTGAAATTATTCA---AAAAGTTTTAAGTTTGTTGACCCTCAAGAATAAAAATGATGTCCAGAACATCTGTCTCATTCCTTTCTGAATTTCTTCAGTTGCAACACACAAA
s HiC_scaffold_1 146320114 1285 + 233722169 AACTTCCACTCTTCTTGGTAACTTGATAGCAGAAGGTGAGGTAACTCTGAGCAAATGGAGCTCTTCTGGAACAAGTAAATTTCCTCTTCCTTCCAGgctaaaataaaaaggcctgaaGCTTTGGCTATTTAATTGCATAGTTGCTTTTTATGGGAATAATCAATGCTGTCAATAAGCAGCATCTAATATGTGATTAGGAGCAGAGAACATGGCATATACAAGGATAAGTTACATTTAGTCCGAGATGCTTGGGCCCTGCTGTAGGCATTTTTTGCCATCTTGTAAATTTGTTTGTGTACATTGCCGGCCGAGCACAAATCATGATAAAATCTCTCTCCATTAGGGGCATTTAGGGTTTGGGAACTTTGAATCTTGCCACCTGGAAGAGATTCTATttcctccacctcttcctcctctctccactTTTAATGCAACATCTCACCGCCTTAGCATTTCACgcttttgaaagatgaattaATTATATCAGCTTT--TCCTCTTGATCAGCAAAAACA-TCAGGTACTCAGACTATGGAACCAGAG--------AAAGGCACAGC-----------------------TTCTATCAATTCTCGTCATCATATGAAGTACAAAGAGGAGA-CAGTTTCCTCAAGTAATACTTCTACATTTCTGGTTCTCTGACACATGGACGGTAG-TGTGAGATATTTGCAGCTGAAGACTGTTAATTATCATTCTGGATGATCATTTGCATTTATATAGCACCTTTTATAGGATCAAATCAAATCATTAAAGCTATTATACTAATGAATGCAAGGTGACAAGTGCTAATACGTCCATGTATGTGGTGAGGCAG-GCAGGACTTCAAAGGAACCAAAAAAGGAGCCAATTAAATGTGTTCCGGTCTCTTGAGCTCTTCCTGAGATTCAGAGGGTTCTCACCAGGCCTAAGGGACAGGACAGAATTCCTTCAGTCCTCTGATGAGGTAATTACAGAGCCTAATATGCTGAAaaattcttttccaaaattgcTCAGA-TCACTAATTTCATATTTGTCTCAGAGGAAGCCTGTGCTCCAG-GTTTA--TCTGAAGAAATGGAGCAGtcctttttataaatgtttattatcaTCAATAGGTCCCCAAAACTTAGGCATCCCCCAGTTCTGTCAGAGGCATGGTGCTCCTGAGATGAGAGGGACTTAGACATTTTGCTCCATCTCACCCATTAAG----CTGCAAGTCCTCCTTTAAAGGCTTTAAAATTGGAGACTCTCAAG-ATATAAAGGACAGTAAGATTCGCTGCTTTGatctttcttgaatttcttcaaTAGCATCTAACAAA

a score=20784
s chr3           159054811 678 + 160039680 AGGTTCTTGGTGAGGTAACTTCAGGGGCACTCACTATGCTGCTGTTCAAACACATACCTTGAATTTTT-CAAATGTACATCTAATTAGtaatttaatttaatttttaaatataaCTAATATGTTCATTTGATCAATGAAAAATTTAAATTACTTTACAAAGTCAAGGGCCCATTAATAGACAAACTTCCAATTAAGTTGCAAAGTCTA----TAACAACAAGCAATATCAAAATCTTTACATTTTCAGTCTATTGACTTTCCTTTTCAT-------TGTCAGAATATTGTATCTTAAACTAGATGAGGGAATTGAAATCAGATAAC-AACACTACCACACCAGCATTCTTTATCACACTGTCCCTCAGGTGTTGCTCTGAG-CTCAGTGTTATCTCC--------CAAGAACAATTAAATGATGATTGCTCTGCTTCTCTGCTACTTTTCTACCTGTCACATTAACATGATGGGTGCTTTCTTATTTATCTCAGGGCAATATCTTCTGAAACAATTCTATACACTTGTCAGAAAGACAAGACAGAGAGGATCTTAAGATAAG-GGAGAAGTTTGTCGAACTGATGGAGCCTAACAGACATTTCAGGATTAAAGAATTGTAGTAGGTCCCTCTTGCTGGACTTCAGATCTCACCTCACTGAAATATGGTATCTTTGCATACTGAGTGTTCTCAACTGATGAA
s HiC_scaffold_1 146322257 679 + 233722169 AAGTCCtttaagaaacaatttcatgtGTTTTCCCCAAGTTTCTGTTCAAAGATAGGCCCTGAAAGTTTACAAATGAGCAATTTATTAGGATCCTGATAtg-cttataaatatatattacttgtTTATTTGACCAGTGAGAAGACTGAGTT---TTTCAAAGCCAAAGAACTGTTAGTAGAGAAACTTCAAATTGAGGACCTAAATTCACTTgtggcaa--agaaacagaagaacttTTACATTCTCAggccactttttttcttttgtgtgtgtgcgtgtcagAATATTGTGTCTCCAACTAGATTAGGGAATTGGAAGCAGATAATTCACTCTCCTACACTAACATTCCTC-TCACATCCTGCCCCGGGCAGAGCTTTGAATCTCCCCGGTATCTCCTAAGCAATCAAGAACAATTAAATGATTATTGTTCTGGTCCTCTGCTACTTTTCTCCTTGTCACATTAAGATGAAGAGTGCTTTTGTATTTACCCCAAGGCAATTTCTCCCTTAACAACTCTGTGGAATTGTCAGGAAGGCAAGATGGAGAGACCATAAAGACAAACAGAGAGACTAGTTTTCAAGGCGGGGCTCAGTGGACTCACCAAAATTCAGGATTCGG----------TCTTGCTGGATTTCAAAACACTACCAAC-----TATACAACTTTAGCCTATTGAGCAAGTCCAActgaagga

a score=32181
s chr3           159075970  991 + 160039680 TAATAtaaaccttctaccatagacaattctagaatttgtaagtatgcaccccattaagcatcatacttcaagttgcctgtgaaaaat-----attgctgtaaaagaaaatataaaagtaaacaagcccct--gtgttgttatgcagatgaatagactgtagagtctcttaaattgtttcaggaatagtctcgggttcctagatcggtttttgaaaatggttAGCCAATACCATTTCTGGAAATGTCTGTGGGTTA-AAAACTACTGCATTTATGATGTGCTAAAATAAGTTTCTTAGTCCTAGTTTTTTTTTTTTTTTTCCTTTTTCATGGTTAT-AAATTCAGGGCTTTTCAAATCCACATTTAAACCAAAAGATCCTTTTTAGTCCACCAAAAAGAACTCTCTATTGCAACCTTTATTCAgttgtgatagccagctgaggtaaagtcaccagaggccaaccatggagggcagaagag----caccccgaagccttcaataggcacagcttcTGAGATGTTTGATAGGGCCTATGTACAGGGC------------CACTTTTATGCTTC----TGATTGCTTTTTTGGATTTTTTTTCTGTGCCATGCTACTGGGTGTTCTGTCCTCAATTCCCTTG--ACACAAGGGAAGGAAGAATTCCATCC-AGAAGCAGCCTTGTGTCAGCACTTGCTC-CCAGGTTGGTTGGCTCATCATTTTC-TCTCAGTTTTCAGGT-CTGCAT--GCTTTTCTGTCAACAGTAAGCAGAGTGTACTGGTGTTCTTTAATACTG---TTCTTTCTCTTGAGTATCAAAACCCAGGGG-TGATGAGCAACCTGGAGATCCAACCCATCAGTTAAGGA------------------------------CATATCTGTCTGGAGGAAGTTCATTTTTTAGCTAGCTGAATTTGGAATTATGCATTGCTCATACATAATATCTGTATTTGTCTGTAAAGGTTGATTATCTAGTTGACAAATAGAAGTAAATGTTCCCTATTCATAAA--CAACTGTGACATCGCTATGCAAAATAACA
s HiC_scaffold_1 146335699 1032 + 233722169 TAATATAAACTTAGGACCTTAGAAAACTTTAGAATATGTAAGAATGTATTCCATTACCCCTCATCCTTCAGGCAGCCTCTGGAAAATTCCACGCTGCT-TAAGATAAGGCTCAGAAGGTAAATAGCACCTTAAAGCTGTTATGTA----AATAGGTTTGA----CCCTTAAGAAGTTTGAGGGATTTTCAGAACCTTTGAGATCAAACCAGGAGAACTGTTGGCTAACACCATTTCTGGAAAATTCTGCGGGTTAGAAAAACACTGCACT-ATGATGTCCTAAAATAAGTCTCCTAGTCCtagtttttcc---------cttctttcatggTTAGGAAATTCAGAGCTTTTCAAATCCACATTTAAAC-AGAAGATCCTTTTTAGTCCACCAGAAAGAGCTCCACATTACAACTTTCTTTCAG-GGAGAGAGGCAGCTGAGGTGAAGTCTCTAGAGGCCCACCACAGGGGCCAGAGGAGGCACCACCTTGAATCTTTCAATCAGCACCATTTTTGAATCATTTGATCAGGCCCCATCTCGTGGCCTCTTCATCTATCACTTTTATGCTTCCCTGTGTTCCCTCCgtgagattttgtttttgtgtaatgTTGCCGGTTGTTCTGTCCTCAATTTCCTTGTCACGCAAGGGAAGGAAGTGTTCCATCTGATAGGAAGCCATGTGTCAGCACCTGCTCTCTGGGCTGATTTGTTCATCTTTTCCATTTCAGTTTTCCAATACTACAGGAGCTTTTCTGTCAACAGCAATAATAACACATCTGTACTCTCTGTGCCTGTGCTGCTTCTTCCTGGATGTCAAGTTGCAGGGTCTGATGAGTGCCCTTGAGTCTCAGCCCATCACTGCAGGAGGGTTTCTTGATGAATGTCCAtggatttcttttatttgtatttatttatttatttattttgctaactGAACTTGGA--CAGGCTTTGCTGAAACATAAAATCTGCTTT---------GAGTGCATAATCTAGTAGAAAAATGGAGACACATTTTTCTCCCCCTTAGATGCAATTATGTTTTTACTATGCAAAACCACA

a score=28175
s chr3           159077571 2159 + 160039680 TGCCCAACATGTATAGTCAAGCTTTCTGTGTCCTTGGTTACTAAGGGA---------TAATCATTTTTCAGGAAAGAAGAGAAAAAGAAAACATGTTCAGCCCCTCTTTTGAAAATGACTCTGGAAAACAAGTTTCCAGATTTTCACTGCTTAGTCA-AATATCTTCCCAGTTGTCTTGAATAAAGTTCATGTAGGAACTATTTTATACCCCAGATACTTTTAATTGGTTTCTTATCAGAAAAAGAGAAACCTGACATATCCTATGAATTAACCATCAGTGCTTTGTTCTTTTTCCCAGTCTTTATAGCTATCAATTAGAGTTATAGAAAAAGA--TTACTCAAAGCACTGTTATTCCCATAGAAAATGAAAATAATTTGTAAGATGAAAATCAG-TCATTTTGTAATGATTAATTTCTTTATATCAAGTACGTTCCTTAACTTAATTCTTTCTTTTGTTCTTTAATCTAAAAAAAAAAAATACAACAATAGGAAAAAATGCTAATTTTTTATGTCAC----AGGGACATCTTGAGTATCAGATAAATTGACTC------------ATGTACACACAAACATTTT-------------GTGTGTCCACAGTATCCCTTTAGT-ATTTACTGATATGCTTCTAAATTAGAATTTTACCCAATTAAATTACAAGTTATCTTAGAATAAACAAAGTGAAGGAGCTTTGAACCAC-CTGTCAACATGGT----------------------------------------------------------AATTGATAATA----CTGTAGAAAACAACATGTTGGAAAAGACTGTGAAGATGTTTTAGACTT-------------------TCTAGAATAACA-TTATATAAACTGTAA------TTTTTTAGGGTCATTAATGATATAACCTACTTATACAATATTAATAA-CTGTCAAAATTATTTTTATTTTCATTTTGAAATAAGAAGAGAATGCTAGATTATAGATTGCTTTAGCTATGGATTTAGTGAAGATCAAGA--------------------------------ACATCTCACTC------AAAGAGGGAAACTTTTCATCTTAAAGGGCAGTTACTTGCAAAGACACAAATAA-----ATGAGTATCTCTTCCTATGAGAAACTCCTTGCAGGTTGTCAGGAACTGTGAAGAACAAATTAAAATCTCTGGTGTTTTCATGATTACAAATTACTGTTAATGTATTCAAGGAACAGTGACCCAAAATTTTTTTGCCCAGAGTGAGGATCTGAGGG-AAATATGACAAT--GTAATCTAAGCAACTAGCTCTTAAAATGAGCTATTAAAGATTGG-TCATGTTAGTTGTAGACAGAGCCACTATGGATTCCAGACTAcagaatctaaattatctcatgtgccagattcattcattctccttattaacatctctctctctctctctctctctctctctctctctctctctctctcactcattctctcacttactcactcactcactcattctctctgtctctgtctctgtctctgtctctctctctctctctcACTCACTCACTCCCCTCATCCATACACACATTCAGAAAACACATTTGAACTCTTTG-GCAATAACTGTGATAAATGATTGTAGTGTGCTGCAGAATAAGAAAACTTCATTCCTTGGCTTCAATAGGACTAACATCTCCACAGAGAGACTCTTAACCATCCTGTAACTGCCTTTAT-GGTGAGGTTC----AAAGTACGCAGAAATATATGCTGGGGAAAATCATAATGGGAAGCTAGAATTCTATGAGATTAAGA-GTGCTAAATAGAGGCTGAAGAGTTACTCTTGGCAAA-ATGTGAAAGTTAAGATACAGGAAATATTTTCCAAAGGAAAACAGTTTCTAGGTGAGA-TCAAAGAACTGAAA--------------------------------------AAAAAAATATGGACAGG-----------------------------------------------------TGGTTCATTTTTCACTCT-----------------------AGACTTGGAAATATTGAGTACCCTATCCATGAATTGACTTTAGGAATA------TTCTCTCTG--TTCCTCCATGTCAGTAATGAGTCACAAAATC--ATCTTTTAGAGCAAGAATATGGAAG-----ATGCATTGCCCCTTTTCAGGGAATAATTCAAGCTGTGTAGAAAT---------GATCCTAAAAGTACAT-GGGATGATCAAAGAGAGAATAATAGATAATTCT---------CAGCCTATTTTCAGTGCTTG------ACAGTCGTGATTATGCAAAcatctcaaattgagacaaatctaaaagcccttgcccagcattagcactctctgtagggtcaactgaggctatcttcagtgaggtcacttcctagccactaccctctttatcttttcccttttcattcT
s HiC_scaffold_1 146349790 2256 + 233722169 TGCTAAGTAAGCAGAGCCATGTTTTCCGCTTCCTTGCTTAGTGAAGGAGCTTTGGAGCAGTTTGTTTGCCAGAAAGATAATAA-------------TCAGCCAATATTTTGACAACAGCTTTGGAAAACAA----CCAGTTTTCCTCT-CTGAGTCAGAAGACCTTTTCAGTTGTCTCGAATAAAGTTCATTTGAGAAT--------------AAGGCTTTTAATTGGTAGCTTATCAGAGAAAGGGAAGCTTGCCACATTATATCTTTTAACcttaaaaaa------cttttttcc--tttatataccAGTCagatagagaaatagaaaaaaaaattactaaatgcACCATGGCTCT-ACTGCAAATGAAAGTAATTTGGAATCGGAAGTTCaggtttttttgtgtttcttagcTTCTTCATCCCTAGGAAGTCTTTGGACTT--CTCTCAGTCTCATTTTTTGA----------AACCACACAATGATAG-AAAATGTCTGACTTGCTTATGCTACGTGTAGGGATTTTGTAAATTGCAACTGCATGAATGCCCTGGTGATGGAATTCACACGTAGACATGTTTAATCTGTCAGCTATGGATTTATACCATCCCTTGAATCAGTTATTGTTCTGATGGGTTCTTAAAGTTTTGCCCAGTTAAATCATGTTTTCTCTTAGAATAAGAATGGAAAGGGAGCTTTGTGTCACATTATCAACAAGGTTTGGAACAGCAGTTCCTTTCTGTGCTATGGAGAATTATACAGAAGGAGCTTTAATAATAACTAATGATGTATCCTGTGAGGAACAATATAT--GAATACA-TGTAGCCATGGTATGCATTTGCAGTAATTTCCTGAGACCTCAAGACTGGTAGtcataaaaagtagaaatagtCTCTTCTAGGATAATTAATAGCACAACCTCTTTGAATAAGCTTAGTAAGTTATTAAGACtatgtttcctttaattttgaagAAGAATAAGAATACTGGACATTCAAGTGACCTAGCCATGCATATATTGAAAAGTAAGGTGAGCTTAGGTGCTCCAACCAATGAGGTTGGTATGTCTCCTTCTGCACCAGGCAGAAAAAGTTCCCATGATAAAGCACAGTTCCTCAGTAAAGGGCTAAGAATTTTGATGTGTGCATCTCCCTGGGAAAAcctcctcacaggctgtcagagacTACGAAGAGCAAATTAACATCACTGCCATTTTCGTGATTACAAATTAATGTTAATGTATGCCAGGAAGAGAGATCCTGAGGTGTTTTCCCCAAAGTGAAGTTCTGAGGGAAAATATGACAATAAATATTGTAGTCAATAATCTCTTAAAAGAAGCTGTTGAAAAATGGCCCGTGTCTTTTATAGA------CACTGTGGACTCCAGCTTATAGAAACTAAATGACCCCAAA----ATACCTAACTAATCTTTGCCTtaacat-----------------------------------------------tcattcatccatttattcattcacc--------------------------------------------------------------------------------------aaaCAGTACCTGAGTGGTGTGTACAGGGAGTGTGATCAATG-CTGTA----ACAATGAGATAAGCAAACCTGGTTC----------GTGGGACTCACATTCTCCCAGACTCACTCACTGTCACTATTCAAGTGATTACATCTGTGGGTCTTCATGAAAAGACACAGCAATA-----TTAGGAAGATCATTGCAGGAAGTTTTAACTCTGTGAAATTAGGATAAGCTAAA---GGTCCAAAGCACTGTAGTAGCTAAACAGGTGCAGGTAAAGGTGctggaaatattttctcaatgaaaataatttctagacCAGAGGCAAGAGACAGAAATGTTCAATAGCCCTAACTCCACCAGCCAgctgagatttaaaaatataaagatcagtGCAATAGTTAGTTAGAAACAGAATCACTCAAACAAATGGATGTTTTAAAGACTGGTACATTCTTCACTTTTACATAAAAGTATTTTACATAAAAGATTTTGAATGTCTCATCCTCTTATTCCTAGATTGATTTCAGAAGCATAGTGTTTTTGTCTGGATGCTTCCCTCTCCCCCA--ACTCATAAAACCTAATCTTC---ATCAAGAAAATTGAAGAGGTTATGTACAGATCCT----ATGGAATAATAGCAGAAGCTTAGACATCTATCTATGCATCTTGAACATACAGAGAGGTCATCAAAGAGAAGATAATAA--GACTCTCATTAAGGGCAGCCCACATACAGTGGCTGGTTCACATggtgatgataaaaaaaaaaacacaacttacAGTAGATCTAAAATCC----TCCACTTTCAGAATTCCTTAGAGAGTTCTCTGAG------TCCTGTGAGGTTGACTTATAGC--TTGCCTTGTCCTTCTTTTcaattctcctcct

a score=24598
s chr3           159079783 669 + 160039680 GTCTCAGACTTCCAAGTTGTAGAGCTGTGAGAAACACACACC---TTACTTATGACACTTGGTTATGGGACTCGCAACTCAA-CTGACT-----CTTCCTTGGTGTCGCTTCCTAGGAAACACAGCCTGCATGCAACAAGATCTCTTCACATCATCACTGACTCTTCTGTA-GAATG--TGCTTGGATTCAAATGAAAATGATAGAACCAAATGAAACAAACACATTTCATACATAAAGATTCCAATATGCTTAAATGCACTCTAAATTGACACTAGGGTTTTCTATTTAGAAAATATCGTTCCAATCCAAATTACTTGAGGAGG-TAACTGCCTGGTGAGCTCAGAGCTATTCATCATATTCATGACTTGGGGATATGATATGCAGGTCCCCAAGTTTCTGCCAAATGAAAATAGAAAGATTGTCATCTGCAGAATGTCCTGTCCCCAGTGGTGCTGAGTCACTTGAAATTCCCAACACCTGTGCAGTTTCCCCTAAGGCCTCTCTCTTACAGTCAGAATTCAAGATATTGC--ACCGCTGAGGCAGTTGATAAGGAAAGCCAACTTAGTC-AGAAAACCACAAGTAAT--TGCTGAAGTCTCTGGAAGTATAACTCTTCCCATCAAAATCTTG---TCTTTGAGCAGAACTGAGTTTCTCACTCTGAATTACTTGAGGAGGGCAAGGT
s HiC_scaffold_1 146352757 673 + 233722169 gtccctgTCATTTAGACTCTACAACTGTAAGAAAACAACACCCCCTTCcctatattattttgttatga------caaCCCAAGCTGACTACAGCCTACCTCTCTATCCATTTTGTCAAAATTCA-----CATGCAGCAGTGTCCTTTTGCAATG-CTTTGACTCTGCCACCTGGATGCTTCCTTGGACTCAAGGGAAACTGATAGAACTTGCTGAAACAAATAAGTTGCATACATAAAGATTCCAATATGCATAAGGACCTTCTGAGCTCGCACTAGAGCTTTCCATTTATAAAACATCTCCTTAGCCTGAATTACTCCAGGAAGATAACTGCCTG-TGAGCACAAAGCTATTCATCATATTCATGACTTGGGGAGATGGTGCTATGGTCCCCCAGTTTCTAGCAGGTGGAAATGGAGAGATTGTCATTTCTAGTTCCTCATGTCCCTGGTGGTGCTGAACCACTTGAAATTCCAAACACCTGCATTGTCTCCCTTAAGG----TTTCTTACCATCAAAATGCAAGACACCGCAGAGCTCTGAGACAGGAGATAAGGAGAATCCACAGAGCCAAGAGAACAGCAAATAATTCTGTGGGAGCCTCAGGAAATTTAGCATTTCTAATCAAAACCTTGACAGCTTGGAGCAAAACTAAGTCCTTCACTCTAAATTAGTTGGGGTGGTTAAAGT

a score=27708
s chr3           159089950 3171 + 160039680 TTTAAACAAGCTCCCTATGTATGTCTGAAGCCTTGCAGTTATCTTAATTAATGTTATACTTACATAAacaa--taaccctttaatgtgggtaccattactttcagttttgtagatgaaaaaaATCTCAAAACCAATATGAACTTGAACTTGATTAAAGACATTTTA---------AATGAAACAGATATTTTAATTCAGGGTTCTTTGGACTGCTGATAAAACAAGACTATGTG------GTTTGGGGTATCAAAAATTTTCCTGAGATTGTATTGAATAGTAAGTAGTGAATCTGTCTATGCTCTTCCATGTAGATTGTCAGAAAACAACTCCAGCATCCTGCAACAAGGAACTACTTTGTATTTCTAGCATGAAAAACAAAAGTGCTGGAAAATAGAAGCCTATGGCCAGGAACAAACAAAAAAAGGAGATATATGGACAAGGAGAACTGGAAGGAAGGT--AAATGAACAGCTCTGAAGACATTCTCTATCTTTTTTA------------TTCCTATCCATGACT-GCCA-CAgctttcaagctttagggggtgcttcagaaacccccaggggatttcagaacacagatcagaaaacccacttacagtggttcttattttgggtctgtgtaaatgcagaatgtttgtacttctaaccagtttccaatgatattgatgtggatgaaaagtggatcaaaatttaagatcca--ctgTAGTACAGTTATATTAAGTCAAAAACAGCAGAGAGAGACAGAGGTCTGTTTATAACACAAATGTGCCATGCAGAAATATGCTCTTTGATATACCTCTTATTACATGAGGGATATTAGCGTGATTAGTATAGTTGTTATAACACTGAACTTTACTGTTGGGTAGAGAGTAGTAGCTGAGGTTTCTCATGTGTAGAGTACAACTAGACAGTGTTGATGGAAAGGCCAGTCTGTTGTATTACAGATGCTTAGTCTTAAGAAATACATGTAATGTATGTATGGTGACAACAGACATATACATAATAAATGATAGATGACATCTGATAGATTAATGATAACTGACATGCAGTTAGAGGATATAGAATAGATAATTAGATTATAGACAATAGATTAAATATATATGGATAAACAGATGCtagatagatatagatgatagatgtttcatagaaaattgataaatagatgatagatatataggtgatagatagatagatagatagatagatagatagataaatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataTCCAATTGTAATTTCCATGTGTAATATTGAATAGAACATTGGAAAACAAGAGACATCTCTTTTTAAATACCATGTGGTAAGAGTATGAAATGGTGGTCATAGATAAACCCACCAAGACCATC--------ATTGAAAGGACCC-CATTTCTCTTTTGTAAG-----TTGTCAGTAGACAC---TTACCTAGCTGCAAGTCTTACAATTAGCAATTGCCTCAACTGAAGAGTTCTTTGTTCTCACTTAATGCCACATGCTCCCAAGCTAG-TTAGATTCTAGGGAAGTAAGTAGATTCTCCAGTAAGTGCTAAGACTTTCTCCTCATCAGTGGGACCCAATGGAGGGCAACTCT----GACATCTCATTCAGCCTGAACCTTGATAGGGTCAACAAAGACTGCCCAGTCTTCATTTTCAATCTTTTCTCAtcctccttgcttctcattggaggtttccccataggccttcattcctgaagtactgtagctt----aaattgcatctcagcttaaactaATTCTTTGAGATTCAAAGTTCTGATATTTTGAGCCCTA-GAGGCCAAAGGTACACAATATGATGAAAAA------------------GGCAGAAAATACGGAAAAAACTCTGAAATCCAATTCTTGGGTTTGATTTATGTTTTTATAAGCATATCTCATTATAATAT-TTGATTTATTCATCTTGAGAAGAAATAAAGGGTGTTTCACAAATCGTCAGGAAATACATTATTATATGAGTTACTCCTGATA------CAGAGGCAAGAAAACGTGAGTTTTAGAAGTAAATTACCCCCACATTCATAATCAAAA---TAAGTTAATCTTTTATTTCTCCTGCTTTGAAGATGGAACATTCATATGACACAGTTTTCTCACCTGTTTTTCTCATTAAG--AAATAAAAGTGCTTGTTTTCACAAGGTAAGAGGCTTTGGGCTGGGAAAGCTTTCCTAACCCAGGCAAGCAAATCTCTGTCTGGCAGCCTGCTATCATCCTCACAGAAGAAATTGTTGTTTAGCCACAGGGGATTT-GTAATCATTGGTGCCAGGAACTC-TGTAGATTAGGAGGGCATTTTCTTACTGCAGGCTCTGGAAAGTAGGCCGGTGAGTCATAGAAAGTAGAATTTGACATGGACCCAGAATGTATGAACTTTTTGAAAGGCTATATGCCTATAATTCAGATTTCAA--ATAA-----AGATATG---TCAAGGTATTTGTCGCATCACATTGCACACTATGGGACCTGGATGTCAGGTGCCACATGAAAATGTCTACCACAGAACCATGCTAAATAGGATAATATGACCACTGTGGCCTGCACACAGAGGATATGTGTGGTCC-TATCTAAAGCAAATATGTGCTCTACTTCAGCTTCTAACTTCAGG-GCATACCTTAAGGTTGGCTCCCAAAATAATATCACTCTAGTGGCAAATAAAGACAAAGAATACTAACTCAAAAAAACCCTCAAGTATGGACCCAATGGACCAAGTCTTCTTGGCTTTCCCCCAA-ATTCACCTTAACAGTCTTG------------CAACCATGTTTTACTGTTTGCTATACAG---GAAGGCAATACCTTATCATATTTTCATGTGGGTATCAATGAAAGCAGAACATAGAAATTATTTATAGAGATGATTT---------ATAGACAGTCCCCAAAGAAAACTTGGATCTTTAATCCACTTATTAAGCACACCAAAACTTCTAGCGCCAAGCATCATTACCTAATAATGAACTTGCACTCAAC--TCCTCTCTTGTCACTCATTTTTAGAAAGAAAAGGGACGATGGTACTTCAGTAAGATCTAGATGACAGCCATTTCTC------TGGGAGGATCAGAC--ATCCTTCTGGTAAATT---------GGAACTTC-----TAGGAAAAAAAATAAGGCT-GAGTTACCTTCAAGGTTGCCTGACATTTTCATTTCCATAGGATTAATGTCCCACTCCCTTCCTCTGTTGTCCTATACTCTTTCCTGTGTT
s HiC_scaffold_1 146359096 2804 + 233722169 TTTCAGGAAGCAtgatttacatatcagaaactatGCAATTATCTAAATTAGTGTTATAATTAAATATGCAGAGCAAACTTGTGAAGTAGGTAATAGTACCTCCATTTTTGT----GATAAAAATTGTGAAACAAAGTTGATTTTGAACTTGGTCAGTGATATATTATTAGTAACTATTGAGGCTGG-ATTTTAATTCAAGACTTTTTGGTCTGCttagaaaatcaaaatgtttgttttgagtttgagttGCCAAATATTAGCTTGGGATAGCATCAAATTGAAAATAATCAGACCATTTGAACAGTATTCTTCAGGCTGAGAGG---------CAACATTGTATAACAGGGAACT---TTCCATTTCT--CATGGGACACTTAGCTGACAGCAACTGAAAGCCAATGGTCAGGAAAGGACAGCAAGAAGGACCA-----GCAGAGTTAGCTGGAAGGAATATTGAACTGAAAGACTCCAAGGTGATGCTACatattttttggtttggttttgttttccttatataACCCGCCAATGGTTTCCAAGCTT--GAGGATTCATCAGAACTCCCAAAGAGTTTTAAAAGCATGGATTGTGAGCTCCATTTAGAGAATTTGTTATTCTGAGTTTAGAGGAAGATAGAAAACTTGCATTCCTACCCAATTTCCAGTGATGCTGATCTGGC----------AATGAAATTTGAGAATCAGTCTGTA-------------------------------AGAGACACA---CTGTGTAT----CTGATGAGACGAACAGA-----TCGCTTTG---------------------GAACATCAGC-------------------------------TCCCTGCTAGACAGTGTATACCAGATGAGC--------------ACTGCAGCTAGACTTGGTCGCTTCAAAACTCACACTGTTATTTTCTAGGTGATTGATATTAAGCAGTTTATTTAACTTATGTGTACTCAGGAGGGATAGACACAT---------------------------------------------------------------------------CCATAGATACTAGA-------------------CAGA--CTAGATAGAAAT--------GCTCATGTATAGAAGATTATT-------TGGCACAGATGAAGCTGAGAGCTGGAT---------------------------------------------------------------------------------------CATC--------------------------------AACAT---------------------------GTCCCACATGGCCACAGCATGGCATGGTG----------AacccacaatgatcctcccaaCTCTGCTGCATGAACATGTACAGCTCACCTAGGAGGAGTATTTCCAGCAGACACACTTCATTTACC-------ATTGCCTTCAGGGACTGCTTCGGTGACAGAGAGCCGT---CTTATCTGAGGTTACATCCTATCTGTCTAGGCTGGGTTCATCCCAAGATTGTTGAGGCATGGGTGAATGAAGGG-------CCTGGTTAGGTTGGTCCAGTCCCCGTCTTCCCCTCCCGAAAACCATTTCAGCCCCAA---GGCCAGGGTCAACTGAAGGTGCtcggcttccttc------cttccttcattcttgtTCCTTTCC--TGGAGACTGACCTGGAGAATCTCCTGCTTCGAACATAGTGCATTCTGTGAGCCACCTCCCAGAGTATGCT---TCTTGGATAACCCAACTTGTATCATCTTGAGCTCTTTGAGACTAAAGGTGCAGGATTTGGTGGAGGGCAAAAGTTATAGTTTGGTGGTGGAGCATAAAGTTACAGTTCTAAGGACTAGATCTTGGGATTGTTCTCTGactttataaaataatctatgtGCCAGGTATTGTTACATTCA---------------------ATCTCACAAAATATC------TATGTTATTGTT---ATTATCCCTGACAAGAAGACAAAGATAAGGAAACAca---tacagaaataatttttatctgcAATCATGTTGAGGAGCATAAATGAATTCTGGGTGTGTT-GACTCCAACGATGGACCTCCCACCTGTCACACTTTTTCAATCTGatttt-tcattaaagaaaatagaaacagtatTTTTCACAAGTGGAGAGTCTGAGGGCTGGAAAATCTTTCCTGATTCAAGTAAGAAAAGCCTTGCCTGGAAACCTGCTATCTCCTTCACAAAAGGAATTGTTGTTTAGCCCCAGGGGATTTGGTAATCGCTGGTGTTAGCAACTCAGGGAGATTAGGAAAGACTCTTCTCACTGCAGGATCTGGGAGGGAG------AGTTCTTTCAGTACTGTATTTGGACAAGGTCCAGGATTCATAAATCCTTTGACA-GCCATATTCTGCTAATTCACGTTCTGAGGATAACAGTCAGAAGTGCACTCCAGGCAAATG-CACGTGTTTTTATGTCCCCTGGAACACTGGTCACAGAGCCCATGTAGAA-----CATCAGAATTCTAGGACACATA-GAGAATATTTCCAAGGGGGC-----------AGATGTGAGTGTCCCAGACCAAGAGCAAGAAACTGATCTACCTTAGGACCTTAGCTCAGGCCCACAACCTAACCTTGAGCCCC----TATTGGTACT----------ACAATGatgagaaacaaaatccaaagtaAAACTTCCGGCCTGGGTTT--TTGGCCAAGTTCTCTTACCTTCTCCCCAAGGCTTACTGTAACAGGGTTAATGAGGCTCAGTCCATCTTCCTGTCTTATTAGTCAGATAGGAAGAAGGCAATATTTCATCACATTTTAACGTGAACTTCAGGGAAggcaaatgaaagaaataattccaAGAAATGAAATCCCCCAAGAAAAGAGAGTTCCCACATATAACAGAACATTCTAAACCCTTTTTTTAGTACAGCAAAAAGTCTAATCTTAAACACCATCATCTAATACTATGCTTGAGCAGGACTTTCCTACATTGGCTCTCTTCCTTAGGGTGAGAGAGAAAGGTATTGTTTCACTCTGATCCGGAAAACACCAATCCCATAAGTGACAGAGGTGTAAGACAGATGTCTCTAGCAAGTGACCAGAAAAAGAACTTCATTTTTAGGTGAAAGAAAAAGGTTGGAAGGGACTTCAGGGTAGTCCTGTATTTCTACTTTAATCACACCATCCCTCCACTTTCTCCCCCT----TCGTGTCCCTGCTCCTGTGTT

a score=30582
s chr3           159094385 2191 + 160039680 ACAGGGATTGTTTTTCCGTTCTTAA--TTACAGTGTTTCCTATTTATCTTTGAAGCAGG----------GTATCATAGGGATATTATAAAGATCAAGTAAATAGTTTTTTGTTTAAGGTAGCCTCTGAGATACAACTAAGGCCCTACAAA-----------ACATATGGTACATTTCTATTTTACTTATTTATTTTTTTATGCAATATCTGAAAGGCTGACTATAAAAAGTATTTTATCTGaacaacaacaataacaacaacaaaacaaAAAAACAAAAAACCTAATAGTCATGTTTCTG-TAAAAGTG---TGTCAGATTGACTAAACAGCAACTAAATAA------CCCCCTTTAACTAGCAAAG--TAGAAGAATAGAATTCTTAAAA-----CTGTTGTCTTTTAAACTCTGCTCA-TGCTTGAATAAACTAAATGCAAGGACAGGGCTTAGCTCTTTTTATCTAACCCACAATGCATTTTCTTGTTTAGTACC-----------------CCCTCATGTATTTGATATGTT-------------CCATA-TATATACTTGCTACAAG--------------------------TTTCCACATGGATCAAGCTAGATATGATA----------GTTTAGTCTATTAAAATATTTTTTCTGGAATCATCGGTAGCTTCACTATTCTGTAATTTTTCATAAATTTTAGCCAGACTTATTGCTAAAACTAAGAGTTTAGCTCAACACAGTACTAAAAATGTATTTGTCTCCTAGGGGAATTTTTTTTTCTAAAATGGCAGTGTGGCTTCAGGCATATTCTCACTACTTAGAAAGCAGTGATGGGACATAGCCAGAGGCTTTGCAGAAGGTGTCAGGATTACAGATGTAAAACTGAATCTGATGTCAGTGAAATACAGATGAGAAAGTAGATAAAAGCATCT-TTCAAATAATGGTAATGAGTTTGGTTGTCtcaaaatcacct-ggaaaattttgaaaatgtacaca-ttccagaatccatctc-tgcccactgcttagagtctgattacatccttcttgggataggcttagaaatctatatta---------taCAGCTTACT-------TTCCAGCAAGGTATACTGTCACATTGTCTACAAACT------------------------TGCTAAAAGTGTAGGTTGTGTGGCCCCAACTCTGCCCCAGAAAATCTTAGAGAGT-TCTGTGTCATCTGGAATCTGAATTTTTAGAAAGCATTTCCTGAGTTAATCCTATAAATTGATAAACTTTACTATTGCATTGGATTAATTCAGTACCTT-CCATTAGAAGAA---AGTTGAAAGCTAAAAAAATTAGAAGAC------AAAGATA-------GTTCAACCACATCATAGAATTCTTCTAGCATACTCTAAGAAGTTGAATCATCTGTGCT----CAGAAACATTTGATGGACATGTATGTG----------------------------------------ATTAGCTATAGTAGTGGAGAATA------AAGCTCAGT-----------ATGGGT-CATAAAAGAAAAATT---ACAAAGCCAA-------AACACAATACAATCAGCCTAA-ATATTAAATGCTTTGTGAGATTAGCTATACTTGAAATTCTGAAAAGTATTtgctatagtctcaatgttcacatgtcctcaaagaccacacattaatatcctaacaccttggggac---tttgaaaagtaagaacttc-aagacttcatataggtcttcaagactgaacc-ttgtgattggaat-gatct--tcaggaaagaggcttga-agaggcctgtggttcctgtgcttttataacatgtgacaacaggaaatgttatttgatgctctaggagaaggtcccttaccagatact-attcaattgctattttgttcttggaattctcagccttcaaaactgtgataaagaaatagagtcaggtggtttataagtcaaccagtgtatggcact------------tcatt-aaagcagaagtggat-----aagac--aATAGATATAAGGGTTGTTAGTTATAAGAGTTTCTA----CAGGCAAGGGGAGATAGTAGGAACTAAACTTGTCTTGGAAAGCTTCCTTAAAGAAATAACGTGAGTCCAGTAAAGTACTACCAGTAAAATGAGAAATGTAGAAGGCAACTCAGTAGAGGTCAGTATGAAATTTTGAGCTGTCACACTTTCAAAAAATATGTTCACTATCCATATACAAATATCTAGTCCATAACTATTGTTTCCTCACATGTAGAATGTAGTCACTGAATCATGCTGTGCATAACTATGCATAACAAAAATACTTTGTCCCTTACTTTGAGACCATACAATGCTGGACAGGAACTCTCCTGTGTTTAGGATAAAGCAAAAAGTCACACATGATGTAAAATTGTGTTTAT
s HiC_scaffold_1 146362858 2304 + 233722169 ATGGGGACCTTTTTCCAGCTCTTAAACTTCCTAAGTGTCCTGCTCATCTGTGAAACAAACATGAATAAAATGTCATAAGATTATtataaagatcaaataaacaact----GCATGAGGTGACCTCAGAGACATAGGCAGGATTATATGCACCCAGAGTCTCACGTGGAATGCACTTAGATTTTACAGTTTCAGTC---------------AAAAGACTacatgtgaaaga--------------aaaatcagtaatTCTAGGTGAAGGAAGAAACA------------GTCATCTTTTCACTAGGAGTGAGATGCTATTTCGA-------gcaattaaataattttctccCTGTTTAATAGGGGAGGaataaaagattata--ttttaaaagcatactGCATCTTTTCAAAACCAGATGACTATTAGAATAACTTAAATATGGAAATGGGGCATAGCTGTTCTCCTGTAACCCCCAACA-----TCCCCTCCAGTACCACCACACACCTTGTCAACCCACCTGTGTTTGGCATGTTTCCATGGCAACTGCCATGCTATCTAACTCCTGAATGGTGTTGTTAATGTGGTGATTTAATATTTTCCATGTGGGTTAAACTGAGTATGAAAAGGTGCAACGGCTTAGTCATGCAGGTTAAATTTTATGGAATTTTCAATAGTTTCACTAAACCATGTTTATTCATAATTTTGAAGCAGATTTATTGCTGAAATCAAGTGTTTAGCTCAAAATGATACTTGAAACGTATTCATCTCCTAGGggattttgtttttccaaaatggCAGCTTGGCTTTGGGCTGATTTTCACCCCTTAGAGAGAGGTGATGGGATTTAGCCAGAGGCCTCGCAGAAGGTGTCAGTATTGCAGATGCAGAACTGAAAGTGAGGCTGATGAAATATGGATGACAATGTAGTGGAGAGCACTTAACCAAATGATGGTAATGAGACTGGTTGTTTCAAAACCACCTGGGGAAACTGTGAGAAAGTGTAGATTTCCAGGGCTCATCTCTTGAGTATTGCAAATATTCTGAGTTTATTGGCCAGGGATGAAGCTTGGAAATCTGCACTATTTAAAGCTTCCAGGTTATTCCAATTGTCTCAGCACTGT-TACTGTGATACAGTCCCCAAGTCATTCCTGTGAGACCAGTCAAGGAATGCTAAAAATTCAGACACTTAAGTTTCACTGCTGTTCTAGTGAATGACAAAGAATGGCCATAGCATCCAGACTC---------AATAGGCA-TCCCTAGGTGAGGTTCATAAAATTGAGGAATTCCCTGTAAAGTT--ATTAATTCAGTACCTTATTTTTAGAGGCAAGCAGTAGAGAACC-CCAAAATTATATGACTTGTCAAAAGTTACATAACTATTCAGTGACTGTATATGGCCCCTTCTGGATATTCTTGAAAAGTGAATcatttgtgttaaaaaaaaaatactcaatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagactAGTTGTCTTTAGGTATAGTAGAAGGGAAAAGGAACTAGACTCAGTTGTACATAACAAAGTGTACATGAAAGAAAAGCTTAGACAAGATGTAGGAGGTGGACCCAACATAATGAAACAGACACACTCAAGGCAATGTGAGA-TAGCACCATTCGTAACTCTGGGCTATAGTAGCTGTGTTCTGAAAGTTTCTGTTCCTCCAAAATTTATATGCTGGTATCATGGCCTCCAAGGAACAGGATTAGTAAGTAGGGCTTTCTAAGGAATGAT-TAGAACATGAAAATAGGACCTTTATGTTTGGAATCAATCTGCTTATGAAAGATGCTCAAGAGAGTCCATTTGGTCTTGT--TTGTGTGA----GGACATTGAAGACTTTGCTTCTGTGAAACAGGGAAGGAGCCCACACCAGATGCCAAATCTGCCCACACTTTCATCTTGCAAGTCCCAGCCTTAAGAACTGTGATAAA---------------TGTTTGTAAACCAAACAGCCTAAGCTAGTGGTTTTGCAGGATCATTGAGAATAAAGGGAGATCAGTGCAGACCGAGTGAATCTGAGGAATATTTGAGCTCAGTTTTTGGATAAGCAGGAAAGTGGAAATAATAG-------------------AATATTCTACATAAGGAGAGTGTAGGT--GGTATAGCTCT-----CAAAAAGAG---------------------------TAGGGTGAAGAATTGAGGTA-------CTTAAAAAATTTGTCAGTTGTTCACCTAAGA--ATCTGCTCCATCTTCTGTGTTTGCTTACTTGTAAAATGTTAGTATTGGATGATATCGTGTATGAACACCTATAGGAAAA--CCTCTGTCTCTTGTTGAGAGGTCA---AGTGCAGgacctcccctcctct-tcttGAAGATGAAGTAGCTGCTCATACAAATTGTGCAATTAAGACTAT

a score=18946
s chr3           159106448 1098 + 160039680 taaaatata-cagaaataatatatctaataaaagaacaaaaCTAATAAATATAAATAATTCCAAGCAGACTAACAGAGTTTTGATGCCTTCTATGATCTTCTCATTTTCAGTAAAC-AGAAGCATTTTACTAGCCTGT---GCCTCTTGAGAAGAGTAACTGAATGACACTTATTGATGTTTTGTAAGTGCC--------------TGAACAGTTGCCC-------------AATTCAAAAAACTAGGTGGAAAGCAGAATAAACCATTATTATTCTTGAATCACGTTATTCCCAACAAGAAACTT-GAGGTTTCTTGTATTTGGAAATGTCTTACTG-----AGTTAAATAAATCTTTTTATGTCATCTTCCTATCCAGCTGTCAA-AAATCAAAATAACCATGTCACTCAGGTACTAATTCTTTAAAGTACTAGAATAGTA---ATATATTTCTATGTTTCATTCTTACTGCCATCACAGAAAGTCACTGGCAGCTTTTATGCATAGAATATTGTACTTGGGCTCATTTAGATGCAAGTTAAAGAAACTATCTC--CCAGCTTTAAAAAAAT-AGATTTTACTTTACAGTACCAGAGACAACTTAGAGCAAACAAAAGCAGCATACTTAACTACTCA-AAGTACCTTCAACAGTCTTTGCTCCCTCTAGAAAGCATGAA---------------------GTATGT---CACTGTTGTCTCTCATTTTCATGGCCTATGCTGAGT-TTATCCTAATATCAAGCATAGTATGGAGGAGGTGCTGTAAATA--TTTGAATGATCAAATGAATGGGTTTTCTCTG------CCTGAGGGGGAGAATCAGCTACACTGAAAAGCTTTTCAGAACTGCGTTTTTAGAACTGCTGACTCACTAGAGT--ATATTTGCTTTGCACTTTAAAATTCCTAGGAATAGTATCTGGTTTTCCTAACTCTAACAGTGAGTTAACTCCTC------------TCTGTTGTCTTATTAGTTCATCCTGCATGTCTGGGA----------TTATATAACATGATTGATGTAAAGGCAGATGATAGAAAAGAAACATTTTCTGAGCAGG-----GTCACAAGATGTATTAGCTAAAATTGTTATTAAATGCTCACCAAAGCACTTCTAAATATTTATATCCACATATTCCTTTGTAGTGTGATTATGATATTTTCCCTAT
s HiC_scaffold_1 146370672 1153 + 233722169 TGAAATTTATCAATAGGAAAACATCTATTACA-GAAAGTATTTGAGAAATGGATTTACCTCTAAACAGACTAATAGCATTAACATGACTTTcaggtttttcttatttttcatagaTGAGGAATAATGTGCTAGGCTGCCAAGACTTttg------ttagtttggt----tttattgatgtttCTTATGTATCCAGGATGGTGTCTGTAAACAATAGACTCTCAGACTTAGCAGATTTAAACAATTA--TTGTCAGAAAGATAAGACAAT-TTCCTCCTAAGTCATTTTATGCCCAGTAAGTAAGTCAGAGATTTACTATATTTGGAGATGTCTTgctgtagaaaaataaagaagagtctACCAAATATCCTGAGGTCTTGCTGTCACTGAATCCAAATGACCATGTTGCCCAAATAGTAATTCTTGAAAGTCCCAGAATAATAGACATTTGCTCTAATGCTATAGTCTCTCTGCCAATACAGAAAGTAACTGGCAGCTTCTCTTCTTAGACTGTTATAACTGGGCTCATTTAGATGCAAGTAAGAGAACCTATTTCTACCCgcttaagaaaaataagattttattctACATTTCCAGAGGCAACTTAGAGCAAATAAGGACAGCATGAATAACCAGGCATCAGCAGATTCTGGAGCCAGAGCTGTCCCTGGAA--CATGGAATCTTGGTCTCTCCACCCTGTGTATGTTTGTACTATTCTCTCTTAGGTGAGTGG-----GTCCAGTACCTTCACAGCGCCGAGCATGCAAT---GGGTATGCTGTAAACATTTTTGAATGGATAAATGAGTGGGTTGGTTCTGTGTTTCCATATAAGGGAGCTACAGATACA--------------------------TCAGTATTTCTGATTCACTCAGTTTCATCTTTGCGTCACAACTTAAAATTCATAGAAA-AGAATCTGATGGACTCAATACCAGCTGTGGATAGAGTCCTTCTCAGGTCGAAGTCTCTTGTTTAACCAGCTTTTGCTAGGTAATTTGTAGCTCTATCCCTTAAACAAGGAGGTGgacttgaaagaagaaaaaagaaaatgagcgcCAT-TGAGCCAGCAGATGTTGTAAGAGACTTCTGCTCCGA-GGAGATTGAGTGTTTACAAAGGGGACTTCTAGTGTCAGTATCCACGGGCTCCCCTGAAGTAAGACTTTGCTCTCGCTCCCAT

a score=8344
s chr3           159113794 548 + 160039680 GTCTATTTCTTATTGTTTATATCTGGGCAGGAATTTTAACTTCCTCAGAGTAACTA-----------------------GAATTTCTAAATCAATGTCTCAAGTCACCTTGAGTGAGTTGTTCCATTATGGAAGGAAT-TCATTCTGCCTATTAGCTATAGGAAATCCTATATCAGTAAGAAACTACTACTAGACATGAGA---GCAAGACCATGATGAATATCTTGGCTCTAGT---GAAGCCTATGATTACTCCTCGTATATGTGTGTAGGCCCAAATAATATCACCAAATGTAGAGCAGATACAAAAAAGGCTTAGGCTTTAGACTTTAATTCTTTGAAATAACTTATGATGGAGAAATGGATAATTGATTAAGTTTTCATAACACTAAACAGTTTTCTTTGGTATTTAACTGTTTATGAAGATAGTAAAAGTTGAGACTTGAATTGACACTAAAGATTGTGTTAATAAGTTAACTACTTACCAATATTCCAAAGATAACCCAGTTTA--------AAAGAGAAAGAAATGCCCTTGAAAGGACT---------------TTCTTGGTATTAGAGT--AAAAAGATCTAAATATGTCTCC
s HiC_scaffold_1 146371834 571 + 233722169 GTCTATTTCCTGCCCCTTGAACCTGGGCTGGACTTACAACTTGCTTTGATTATCAAAATTCAAGAAAGTGATGAGGAGGGAGTGCCTAAACCGTGGCCTCAAGAGGCCT-AAGCCCGCAGCCTGATCTTGTGTAGAATCTGGGTTTGCTTGTTGGGTATGGAGGTCCTGGGGTGACCCAGGAACCATAACTAGATGTGAGGAGTGAAAGGCTGTGATGAATCTTTTAGTCCCAGCTGAGGAGCAGATGATTCCT------------------GCCATGGGATTGCCTGCAAATGTTGTGAACAAACAAAAT-GCCTTGTGTTTTAACCCCACAAGTTTTGCTATGATTCATTATTTACAAACGGAAA--TG--CAAATTTCCATAAATTCTAGTAATTTTCATTATTCCTCAAATGGCCAAGAAGATACTAAATGTTGAACCTTCAACTGGTATCAGAGATTGCATTAGTAAGTTGACTACTGA--------TTGGGGTCAACCTAATTAACGcctcacaaaaagaaagaaagaacgaaagaaagacTAGATGATTGAAGTTGTCCTTGgcatttaaatagaaaaagatttAGGTGTGTCTCC

a score=31383
s chr3           159121250 2790 + 160039680 CAGGCAGCCCATTCAGTCAATATTTTTCAAAAATTTATTCTATGCTATAATAACCCTAAGACTT-TGTCTGTCCCAGGAGGACTTAAAGTTTGAAGTACAAATGCTAGAGAAAA-----GCTAACATAGGAAAACAG--TGAAAC---CACAGAATATTTAGACTATGTATGTCCCTCTATCACTAAACCTCTGAATT----------TCCCTATT---CAGGAATAAGTCAGTAAAGGCTTATACATACACAAGCATACA----------------------------------TACTTGTATCATGACAGATACAGAAAGT--AAAGGCCAGATTTAAA----------------------------------------------GGAACCATACAAGAAGATTTACCAAAAATAAATAGAATAGTAAC------CATCTCACTCATCAGTGGGCACACCTTGGTACCCAATTTACA-TCTATCTCCTGCTCTTGAGGAATCATTTGTTCTGTCCACATTGTTTATGAGGCATCAGTAGTTTGTGCCTTATTTGG-CTCTCCCACACA-GCTTCAAGTACCATGCCGT-----------------TGCCTCCTGTGGTACTGCTGCCAGAATAAT-GTCATGGTGGCTGGC-AGCTCCTGGCACAGGTGGAGGCAAGCAGG-CTTCTGGCAGCAGCTATCTACTCTCATCTCACACATCTACCTG------------GCAGAGTAGCCTTTTCTTTGATATCCTTGTCTGCTCATTCATAAGCTCTCTGGGATCCATTCCCAATTCC-GGATCACA--CGATGCAGAGAGGTAGGCTGTTGGCAGTTACTGACCTGCTAGTTCAAGAGGTCTAAAAATCTGTCTTGT-TGAGTCAAATATCTCAGGAA-TTCTGGCACTGTCTTATATTGGCTCTAATCACAATCCCTGCACATTTAGCCTTGCTTTCTGACCTATACTCCATTTCCATTCCTAAGTG-TGAAATATCAACTATTAGCCA-------CTATCCACCTATAGCTTCCAACCTTGCCTGACTTATCCCTACAGCATAATATGAATTTC--TGTCTTTATTAACAGTTCCTGTATGAGGCTTGTGATGTGCATCTTATATTCAGCTCTCATTATGG-CCAAATGAGGTCATCGCTGTCTCTCCTATTTCTATGGGAGGAATTAGGAATTTTGACCTCAATCTCCAAACTCTTTTTCTATGTGCTGAATTTACCTTTGGCACGCATACAATTCTC---GTTGTGCCAACCCATTGAGGCAGATCCGCTACCCATCTGACCATATACATTGGCATTGACCATGACAAGGAACTC--TCATGGACCTGAGCCTAGTTTCCTTCCCCACTAACATGTAGAAGTGAAAAAAAAATGGCTTGGGGTCCTTCCTTTTCACTGGTCACTCTTGTTTCTTCTCCAG--TTTATCAACCCATTCCTCTACATTCCT---TTCACCTTTGAATTTACTGACTGTTAATCTTCTCTAGTAGCTGTTAGTTATAGCCTATTAGAAAGGTACATAGTAAAATATGAACTAGACTGAGGTCCAGGAGCTGGGGCTGTTCC------------CCAAAGCCAAGGCTAAAA---ATAGGAGTTAGCCTCCCAAATTACA--GGGCT----CTGTGAAA---------GAAGAAAGGCTCTGACCCAAATGAAATAGAGAAGAAATGAAAAGATGGCTTTAAAGTTATGGAACTTGTAGTTGGAAGGTAAAGGCTAAGACTAT-AACATAGCAAAGTAGATGGGATACAAAGAAATTCCTATAGCATAAAGATTATATAAGACACTTTGG-------GCTTGACTCATTGGTAAAG---AAATCCA------------------------------------------------------AAC-----------------------------------------------------TACAAAACATAGTCCCATTTGCTTTTGAAATTAGCAATAGGAAATATAGAACCA--ATGTCCATAAGAGAAT----TCTTTTCAATACATGAGAAATTCAATTCCAGAGG-GTAGAGGTATATGAAAGC-----------TTCATACCCT---------CCAGCCCATGGATTTTATGGTG-ACCTAGTCACCTGGAGCACTAGCAC-AGCATT----GTTCAGCTTGCAGCACTGGACTGCTGCCTGCTCTGCATAGAACAGG-AGGTTCTATAAAGGGACAGACACAATGTACTATTAGCACGATTTCAGTGAAACATAGAAATTATGCCATGAAAAGTTAATTGCCACTTTATTCACTAATCAGCATTATCATAGAGAGTATTTAAAGCTGCAGCAGATTGTACAGCAGCCAAGA-TTAGGCAACAGTAACTTCTAGAAACCTACAAAATTGAAACCTGCATAGACTATAGCTGGTTGTGTTACTGCA-GATCATGTGAAACCATGGAGGAGAAAATAATTATTCTAGTTGGGTTGATCCCTGGAGCGATATGTGAAGACAACAAGCTCTTTTGA---------------CTCTTTATATCTAAAGTTGTCTGAATTAAATTCCATCAACTCAGTTACAATAATCATTAACAAGTATATGTGTATGtatattaatattatttatttaatatattattCATAGTTGACACCACAATAAGAAATACATAGCCCATGTATTTGAGAAATTTTTTTAGTGTTCTCTCAGGCAACAAAATTTCAAAGATTTTTGTTTATGATCAAG---------------------------GCTTGATTCAATTCTTGGATCTAGTAT-TAATAGTAGCTTGCTTTACATTAGTTACCT---AATTTCTTTCAGTTTCACTTACAAACTCTTTGTAATAAGAGTAAGATAATGGAACCAATAAGAACATCAGAGTA-TAAGTATGTCCATATATTATGTTTTACAGTGTTTTCCATA-CCTAGGTCTTTTTTAAACAG-----------GTTTAAGACAAAGAAAATAAACAAA-AGTGTCATAAGAAAAACAAAAACAAAATGCTGAGGAATTAAATA-----AGAACCAATATTGCTTTGCAAAGATAAGACACCCTTCTTTG-TGAGTGTGAGTA-GATG----CTTTGTAG-----------------GTGAGAGGCTTTGGAAATCACAAGAGTTGTTCAAA
s HiC_scaffold_1 146376258 3030 + 233722169 CAGATGACTCATTTGGTTGATATTTTTGAGGGTTTTATTCTATGTTA----GACACTGGAAGTTCTCACTGCCCTCATGAAGTTTAAAGTTTGAAGTCGGGATGCTGATCAAAACTACGGCAAATATGGGAAGAGAGACTGAAATAATTATGGGTCCTCTAACATATTTATGCAACTTGATTAC----CCTTTGCCTTCTGATACTAattcttattttacataaatatgtaagtgcacacacacacacacacacgcacacacacacacacacatacatacatacacacaaataccTACATACATCATGGCTGTTACAGAAGCTTAAAACACCAgacataaaaaccaaaataaaacaaaatcacagcCAAAATGCACAAAAAAGCCCAGcaacta-acaacaaaattta--aaaacaaaataaagtagcaAAGGGATGCTTGAGCCCTGTCAAGGGCTCTGTTTTGGCACCCGATTCCTAATTTGTTTTCTGAT----ACGAGATGTTTCCT-------------------GACACCAATCAGCCCTGCCCTACTTGGGCCCTCAGAGACAAGCTGTAAGTACAGAGCCACCACTGCAACTTGTGTTCTGGCTCCTGTGTTCCTGGCTCTGGGGTGGCCTTCCAGGTGGCTGCCCAAATCCTGGTG-AGGTGGAGGCTGGCAGGGCTGCTGGTAATGGCCTTTCCATCCCTCCTCAGACAGCTGCCTGCACCGGCCAGCTGAAAAGCTGCCTGCTGTCCAGTGCTCTTGTCTGCTTATTCATAAGTTTCCAGGGCTCTCTGCCCAATTCCTGGACCAAAGCTGATAGAAGGAGGGAGGCAGTGAGCAGTCTCTCACCCACCAGCTGGTGAGGTGTCAAA-TGTGTCCTGTCTGAGTCAAATGCACCAGGGAGTTCTGGCACTGGCCTGACCTGGCTC----------CCTCTTCTTCCTAGACTCACTTGCTGATTTG-----CATTTCCATT--TGACTGCTGAGACCCCAAACACAGGCCCTTCTTTCCTGTCTACCTAT---TTCC--------------TATCATTGGTGC------TGGATCTCAGTGCCACCATTGA--------ATATAATACTTACCGTACACTCCTGGAATGGAGCACTAGCTGTGGATCAGCAGGAGT--------TCGATTCCAAGTCT-----------------TCTTAACTGTAAAGCCCCAAGCCCTTTGCATTATGCCTGACCCAGCTTTGGTGAGGTTAAGCTTCTCTAGATTATGCAAAACTGCTCCATGACAGCTACCACCTGTCTGACTTTGTGTACTGCCACCATCTAGGACCCTGATCTTAATCATGGCTTGGAGCC--GGCTCCATAACC-CTAGGCTGC-----TACACAAGTATTTTTTCACTGTTGTTCCTCACCATTGGGCAGCCCTGTTGCTGAGCCAGGATCCCCCGGTCCTGTCCTTCTCCTTCCTATTTTcagttctgtctcagcctcccagcaacCTGC----ATGGCTG--------GGCCCATAGCACAGGTGCATTA-GGACTCTGGACTGGGATGGAGTGGACGAACTGAGCCTGGCTCAAGCTGTGGAGCCTGAATCCAGGGCCAAAAGGAACAACAGTCAGATTCCTGAAAGGCATTGGGCTGAGGCAGCGAAGAATCAGGCTGAAGGAAGGTTCTGACCCAGAAGAG-TAGATCATACATGAAAAAGTAGGTTATAGGTTGAGGAGCT-GCTGTGGAAACCTGAAGGCTGAGATCATCAGTACGCCCCAGTGCAGGAGATTCAGAGGAAT--CTACTGCAGCACGATTTCATAGGGAACTCGTGTAGTGCAGCTCCATTTGCTAGTACAGTACAGCTCCATTTGCGTTTTCATTTGATTGTTATGAGTGCCTGTTTGAGTACATGATGTGTGTCAACacataattctttttacttcatgTTTCCCTCTTCCCCCCTGGTCCTTTCTCGTTTGCAAGACATTGATCGCCCTGCTTTTGAAATAAATACCAGGAAA-ATGAAGCCACAAAGGCCACA-GAGAATGGTCTCCTTTGAGTCTAAGCCAGGG-CAGCCTTAGAGGTGCAGAGTTGCaggcatgcatgcatgcatcttCCTCCTCTGGCCTCTTCCCAGGTTCTGGGGTTCCTGGTGTAGCAATTCAATCCCAG-ACTAACACCAGCACTTGGGGAGCAGCCCACAGTTCCGGCCTGCTGCTGTCTCCCCAGGGAACAGGTGGGTTCTCTGAAAGGACAGACACAATGTACTATTAGCACTGTTCCAGTGAAACATAGAAATTATGCCATGAAAACTTAATTGCCACTTTATTCGCTAATCAGCATTAACATAGGGAATATTTAAAGCTGCAACAGATTGTGTAGCAGCCAAGAGTTAGGTGGCAGTGACTTCTAGAAAGCTAGAAAATTAAGACTTATGTAGAGTGAGCCTAACTGAGCTATTTCAGGATCTTCTAAGGCACCAGA----------------CTACTGAGGCTGGTCCACTGAAAGGCTTGGTGAGACCACCAACTCCTTCGACGTCCCTTCTGAAAGCTCCTTCCACTACTATTTAGTTGCACTAAACTCATTCAGTTCTGTGCTACTCATCATTAATAAATATG--------------------------------------TTGTGGCCAGGACTCCTGTAAGAAGC-CATAGCCTATGTCATCAATGAA--TTTGCACTGTATTACTGAGCATCAGAAAGTCC---ACTTACGATTCTACTCAGGGCACCATGTgcccaggaaagaaaggaagcctAGTAGGATTCCTGAATCTTGAATGTTTTAGTGACTTGATCTGAGCTAAGtttctaaaaatttctttaattt-------ctgagTCTTCAAAATAAAGCTAAGATTACAGCCCTAATGTGGATATTAGAGTACTAAACATAACCATCAATGAACCGTTACAGTACTTGCCAAAGGCTAGGTGTCTGTTAACTGGTTTTAACTAAagtataagcaaaacaaaacaaaaaaatagtgcCACAAGAACAGGAACAGTGAAATATGAAGGAAATTGAAAGACCTAGAGTTGGCATTGGTGTGTATAGATAAGAAAGGCTTAATGGAAGAGCTTATGTATGATGTGGACTTGGAAGGGCAAATCATTTAACCAGTGAGAAATTTTGAAAGCCATAATGGGTGCTCAAA

a score=8406
s chr3           159124502 636 + 160039680 AAAAGAACAGTAAACCACTGAGCAG--AAATCTGTGAGAGAATTAAAGACCTAAAAGACACAAAACAGCCTGGTAGTAAAGGATTAGGAACCAAGTCAGCAAGAAAGTTCTGCTGACCTTGAGAATTTAGCACAGTTGTAGATAGGTCAGTCTCTATCCTAGATGACTTGCTCACACCAAGGTTGGACA-ACCCATTTGGCAATTTGCAATG-TAACTGCAAATGTGAATTTGAAAAGCTTGATTTCCACAG-ATGCGGCTCTTCATGCACCAGAAACAGACTTCTGATCATTAA---------------GCATCTGTCTCCTTGCCAATGCTCTAAATGAGCACAAACCACTCAGTCAATGCATTATAGACTAGGCATTCTAAGGAGGTATGGGGACTGCTTGTCAAGTCTGTCATAGTTTACAAAGATGAA---AGTTCAAGATGAATGATGAAGGGATGGGCAACTAATGAATATGAAAAATTTAATTTGTAATGCAAAGAGAATCCAAGATAAGAAATACTAATATTTAATATCAAGACTAAGACAA----GC---------ACTGGAGTCT-TATGTCAGTAAAAGAATCTTATACTAGAAGAGCAAGA---CTTGGGTAAGATGGGGAGCAATGTTACCCATATTTCAAACTTGCTTTGGGGTATATTGC
s HiC_scaffold_1 146380208 618 + 233722169 AAGAAAACAGTGGGTAACAGAGTGGTGAAATACAT-ACacagttagaga---gagagagaca---ccgcATACTGTTAAGGGATTAGGAGCTAAGCCAGAAAGACAGCTTTGCTGACCTTTAGAATTTAACACTTTGGAATCCAGTGCCAACCCCACCCTGGGCCATGTGTTCACAGAGAGGTTGGTTGTGCCTTCCTGGCCAGGAACTGTGCTCCCTGTAAATGTAGACTTGAGAA-CTTGATTTGAACTGTGTACAACACTCAGCTCCCAGGCACCAGATTTCTGATCACCAAGCCTTTGCCCTGGTTGCATGTGACCTCTTTCCAAGACC-----TGAG----AGCCACGCCGGCCACGCA----------------------------GAGGAC------CCAGATGTGCAGCAACCTCCAAAGTGGAAAATAGCTCAGCATGATCAACTCAGCAGTTGGAAAGTA---AATatgagcatttttctttttaatatacgaagaat-taagagaa-aaatactcATATTC-ATATACAGACTCACACCATGTTGCAGCATTTTAACTGGAATATCTGTGCCAGTAAAAGAAGCATGCACTCAAAGAGCAAAACATCTTACCTGGAAATAAGAGCAGTGGTGTGGACACAGGGGGCTCACTTTGGGG-ATACTGC

a score=16380
s chr3           159127205 374 + 160039680 CTTGTGTTCTCAAGATACTGAAGTCTAAGGAGGAAATTTTCTAATAGATGCTATTGCAACCAGTGTTTCATACTCTTCTTTTTAACTCCCACAATATAGGC--TGTTGTGATGGGCACAGTTTTAGAATATTTAATAAT----TACAGTTAGTAGCAAAATGCATAAGTCATAGAAATGCTGGGCAAGTGTTTGCTTCAAGTTACACAGGCTAATGCCTGCTGTGTGCAAAAATA-CTTGTGTCCTTAATTTGACTAAACGGGTCTTTAGCAACTGGTAATTTTTGCATGTCATAGCCACTGAAAATTGTTGAATTTAAACATCTGTCAAAAATGGGAATATATTTTTCAGAATACAAAACAGGaaaaatgagcccttctc
s HiC_scaffold_1 146381748 373 + 233722169 CCTGTGCTCCAGGGAGACTGAAGTCTG----GAAAGTCCTTTAGCAGATGCAATTTAATACAGcatccc-tgtttttcttttctactccCACCACTCAGACACTATTGCGAGGGAcccatttttagaatatttaaaaataaattacagttaGTGGTGCAGCACATA-GCAAGAGAGATGCTGGGCAAGTGTATGCTTCAAGCTACACAGCCCAGGG-CTGCCGGGTATAAAAATACCCCCTGCCTTCCATTTGCCTGAATGGGAATTTAGCAACTGGTAATTTTTGC-TGTCATAGTCACAGCTAATTGTTGAATTAGAACATCTGTCAAAAATGGGAATACTTTACTCAGAATGCACAGCAGAGGAAATTAGCTCTTCTC

a score=25250
s chr3           159133759 1716 + 160039680 tggaggcaaattgatggtagaatgaaacctccaagatcatgagccaaaattataccattaatctttttaagttgattacctctgatattttactacaataacagaaaac------------cgacTTACA-------------CAGAACC-ATTTaatcaaacaagatgtgaatttccaaaatacagtgatgagatag-caagggatagatgtcactgtcc-aaaagaaggaaac----aagaaagaaaggataggaagtcacaataattctacaa-ctgaaATTTCACCTTACTGATCTATCTC-TAATTCTTTCAGAAGcacttctgaatattatcatatt-gacaatagtttccaacaaaggaattttca--aaatacaagtattcaaaccccagcaC-CTTCTTAGATGTGCTAAAATAAGACTA----------ACTGGTAT-AAGTATTTCTTGAGAGTATATTTCTGTAAACTATGTTCCTATTGTTTTGTACACAAACATACATAcagagagagagagagagagagagagagagagagagagagagagagagagagagggagagagagagaaaagggagggagagaaggagggatggagggaggggcagaggggaagagagagttatataggggagagtaggagGCATAAAGCAATGCAAATGTCAGTAGCAACTAGAAGACTAGTACTAAGCTTAGGCATCCTTTTGTTGAGCATAACTTTGGATGTTGAAGAGGATCCTATATAGATGGAGTGTTTTTCAAAAGATATTGCA---CACAGGTGCCATGGTGGCCT-AGGTTGTGGTTTGCAAATGCTCTGCTGTGAAGTGACTGCAAA-ATTTCCCTGGGAACTTGTAAAAAAAAGACAAATTTTAACTGTTCCTCCAAAA-TGTTAATTTAGGACTTTTATATCTAGAAATTGTGTTTT-AACAGATATTGTTTTGCATATTATTTATTAACTGAACATATTTTGAATATAATAACCTGA-TAAGGACACAGTTTTTCTTTTG---ACTCTTTTGATTCTTGCTCTGGTAAGTGAATTATTGTAAAGATGTTTCTGTGAACACTTGTTTTGTGTTTCCTGGGACACCTTTTCTAGAAGCATGGCAGAATGG---------GGACCTCAAATATCATTCCATGAATGAAAACATTTACAAAATATCAGGAAATCAATTGCACAAAGAGCAGGAAGGCTTTAAAATATATTAACTACCCAGTTCTCCTTACAAACAAAGTGTAAATATCTCTGCATACAGTATCTAGCTTGAAGGCTTACTTATTTTCTATTTCC--------TTAGGAATTCTTATATGTAACCTGTTTACTAGGAGATAGCTATATTTATCTCTTACTTGAATTTTCCCCCATGAAAATCTCATTCCAGAATTTCTGCCACTCA-------------CTAGGCAAACAGAAAACATATACAATGTAAGTACAACTACAAAGAAGCCTTATCTCAGCAAAGCCCACTAAACATTACAGATCCTTGACTTCCCTTTTTATGCTTTTCCCAGTGTGGCAAAATTCCATTTTGCTCTAGGGTATTCCTAGGTAGT----ATTTTTATTACAAAGAACTCAATAGATGGAAGATGAACCAAAA-----------GAAATGTAACACTGTGTGAGGTAATTGAGGGAGAGCCAAAGCCTGCCTCT-----TCCCTGCAGAA--TTGC------------TCTCATCATGTCTTAGAGTAC-AAACAGTTGAAATGGGCCAATCAG--CAGCC--TTTTCATTTTCTTCTGACTA---AAATGTCATGCATCTAATCACATTAAT-TGGAGTCAT
s HiC_scaffold_1 146388933 1686 + 233722169 tggagtcaa-ctgattgtagactgaaacctctatga------------actgtaaaacaaataaatttaactttaa-atgtcaaatattttgtctcaggaacaagaaaaaagtaaccataGCAGCTGGTATTTGTTGAAGTATCAGAACCTGCCAAATCAAACATGTAGTGTACTTCCAAAACCCA---AAGGGATAAACAAGGGATAGACACCGCCattctaaaataaagaaatggaaaagaaggaaagaattgtGCCTCATGAGTATTCCCCAAACCACAATCCAACTCTCGTGATCATCCTCACAATAC-------ACCACCTCCTGATGTCATCCTCTTAGTCATTAGTTTTTAATATAGGAATTTGGATGGAATACAGATATTCAGATCATAGCATGATTCTTAAATATGTAAGAATCAGGTAATATTTGCCATGCTGGAATTAAATTTTTCCCTGAAGTAG--TTCTGTAAACTATGTGCCTTTAAATTTTTGCC---ACTTTTATCCCAGaagattattaaaaatatgtactgTGAAC----------------------------------------------------ATGTTTTGTGTGGGAAACTGAGATCCCTAGTGAGT-ATAAAAAAGAGAGTGG----------------CAAATGAGAGGAGCA-------------TGTGAACCT--GGCTGCCCTGTGGTGTGCCCAGCTGAGTGTGTC------------------ATGGGCTGGTCTT--AGTGATGTAGCAATGCAGTTGTGCCTCAGTGGCCTCAGGCTGTGTTTTTTTAA-GCCCAATCATGAGTTGACTACAGGCAGTCACCTGGGACcttgttaaaaa--tgtaaattctagGTGTTccaatggaagttttgatttagtatttccaaatttagACATCTTATTTTTAACAAGTATTTTCTAG-----GACTTATCACTCAAACATAtttagaaaacaatgctttaaatTATGGCCTGGCTTTTATCTTGTTAACACTTCAG--CCTTGTTCTGGTTAGTAAATTAATATATAGATATTTCTGCACATAATTGTCTTATCTTCCCCCAAACACTTTCTCCAGAAACACAGCAGAAAGGCTTGTATAAGGAAAGCAAATAGCATtacatgaatgaaaacatttacaaaatatcaAGGGATCAATAAGACAAATGCCAATTGGGCCAGCAAATTTACTAATTACCCAATGTTCCCAGTGAACAAA-TG-----ACCGTTGGACACAGTATCCAGCTAAAAAGACAACACATTCTTACCTTCCCAGAGCCCTTAGGAATAATTGTGTGTAACCTTTTCAATAGGAGACAGCTGTGTTTATCTCTCACTTGGGTTTT-CTCCATGAAAACATTATTCCAGAATCAGCTCTACACAAAGGAAAATCTGCTTTGGCAAACAGGA---GCATGGGCTGTGATCAGAACTACAAAGAACCCCCATGTCAGTAAAAGCATCAAGAC-TGACAGATTACTGACTTC---TTTTGTGCTGGTTCTTCTACGACCACATTCCATGTGGCTATAGAACCTTCTCTGGAAATGAACAGTCACAAGGCAAGCACCCTAATAGacacaacacaaaataaaacatagagacTTGAATTGAAACAAGGGGTGA------TGAATGCGAACTTGTCCCTCTCTCTGAAGACACCTGCATAAATTTGCAGCTGTGAGAATTTTCCTAGTATTTTCCATTATGAAACAATTGTAGGAGGCCCATCTGCCCAACCTGTCTTCACTTCCCTCTTACCAATCAAAAATCAGATGTCTAAAGATATCTCTATGCAGTCAT

a score=21972
s chr3           159143342 1896 + 160039680 AAAAATAACTTACTATTTTTTTAATTG--------AAAATGTGACTGGATAAGTTCAATGTTATGTTAATCTATTTTTTTTGCCTATTTTTTCTCTTGATATTCTATGTTCATTATCTCTCACCTGACAATAGGAGAAACTGTGCAAACTTAATATAC----------ATTTTTCATAACAGCTCTGTGGATTTGCAACT----TAAAAACCACAATGTTTCAGTTATCTCTGTGTAATCATAAAGTGTTAATATTGTATCTTCAAAGTAAAATAC---ATAAATGTTTGATGTAA-TTGAGTAGCAA--ACTATGCCTCCTCTGAAAATCTGAGAACAAATAGCATAAAACTCTAAGA-CACAAATGGAGGCTGGGGGTAAAGAAGGGAAATGATCTTGAGTAGGAAGAAAAGCTCTTGAATTTTCTACTGGATTTTGCAGAGGAAGAGAACTTCACACTATGCCCTTTTGTTGCCTGTGGTGACCATCAAAGTATCAGCAACACAGTTTCCACAAAGCATGCCTCTAAATAGTTCTGCAGTTGTTGCCACCTCTGGTGAGAGGAAAGGAT-TGCTGTATTCTCTGTTCTAATTCAATTCTGTAAGTATTGATTGAGCTCCTGACATGTGTTCAGCCACGGTTGACCTGACTTGAAGCTGTAGCGTCTGGCTGCCTATATTTACTGCTATAGATAGAGCAGGCAA---GCTTTAATCCTGCATAGCTGCCTCCCTGATCCTCCTCTTTTC-TGCAGCACATGAAACTCTGTTCTGTTTCCCAAAGCTGTATAATGCATTCTCCTAGAAGATATATTTAATGAGTGAATTTCTCAAAGGTGCTTC-------------------CATGTTGGGAAATACTGCCATCTGTA-TGTCTATTAGAGATTTTTTTTTCACTTTGCTTAGTGCAAAGA--CTAAGACCACTTTCAACAATGGGATCTTCTTAGTTTTATGATGTT----TTCCATGATTATTTGGCCACAAAttttttctgcttcttcttagtttccttttattcttatattttattttgttttcttttagtattttattttTGAGGTAGGATCTTATTCTGTAGTCCTTCCTGGtctcaattactgggaataaaggcatatgctatcacatctggctTCCTTTAGATTTAAATGGTGATCCAGACTTTGAGCTACAGTTGGGTAGACAAAAATTCAATTATACA-GGAGGTAGAACTGGCACTTCTCCTTATCCCT---GTTATCTATCACAATGTAACAATGGACAAACTATTTTA-----------------------CTATCAATGTGGAAAATAAAATACATTCTATAAAGTTTCGACCTTCAGTAGAAGTGAAATTGGTGAGGTCATTATTACCAAACAGGAAGTCTAAAGTTGACCATTCTTGCCCAATCATTTACATCAACATTGCTCA---GAGAACCATTTTATTTAAAGA-----CAGTCCTAGATATTCATATAATCCTGAG-ATGGTAAAGAT---CCCTTTTATTGGAATGACCAC-ACTGACCTCATCC---TATGGAAATCTGATTTTCTTATCTGTCTGAAGACTTCAAGAAGCTTCTGAAAAGATAATCTCTTGAAGCCT-AGCATTTCAAGTTCCAGGGTACTTTCTCTTTACTGAGTTCTCCTGTCATATCACATATTGAATG------CCTAGCAAGTTATGCAAATTTTTATAGATCTCACTAAAGATGATGCATCTTCTAGATTTGATTATGATCTTATT-AGTTAAAAAATTCATACGCGCTATTTAGCATACTGTTTGGAAGAACTACAAAGATGACTGTTGAATGATTGCAGGC---------TTCCCTTTACTTGATTATTTTTATCCATTGGGGCAATATGGGGTAGTAGAACCTGC--------------TTATTTTGGGAAGGAAC---CTTGAGGACATGAGACAAGCAGAATCTGGCAAGGTTCAAAACTGTCAGAAAGAAGTCATTTGGAGAAGTGCAAGGTAGC
s HiC_scaffold_1 146392516 1760 + 233722169 aaaaatcacacaatcatttctGAATGGTAAAATATAAAAGGTGACTGGATAAAATTTAT-TCAGGGACATC-AGACTTTTTGCCT--TGTGGTTCATGAAATTCAGTATTC------CATCACCTGATAATTTGAAGAATTGGGTGTAGTTAAAATTCTGGCAGCTTCATCCTCTGCAGAAATGCTATGGGCCTTCAGATCAAATAAAGACCATGATGCTGTAGTTATCTCTG----------AAGTat-gatattttttcttcaaagggAACCACTATATAAATGTTTCATGAAAATTGAGCAGCAACTAATATGCCTT---TGAAACATAGCTAATATACTCTGGGAAGCTTTTGAATCACAATTTGAAGCTGAAGGTAAAGAAGGGAGATGATCCTGAGGAGAAAGAGACAGTCTGGAATTTCCTGTTGGGTTGTGCAGATGGAGAG---------CTATGCCCTTCTGCTACCTCCAG----------------GGCAAC----TCTCCACgaatcttgcctcaaaaaagttCTGC----------------TGTGACATGAGAGCATGTACTTCATTCTCTGCTCCCATCCAATCCTACAAGTATTGATTGCACTCATATGATGTGCTCGGCCAAAACTGAGCTGAC-TAAAGTTAGAGCAGCTGGTTGCTGATATGCTATGCTTCAAGTAGAACCAGGAAAATGTCTGGATCCCAGATggctccttcttt--ttctcctcttcccttgtACTACCTGAAACTCTACTCTGAATCCAGAA---TTATCATTTAGCCCTGTCCAAGGCATATTTGATCAATGTTCATCCCACAAATGCTTCCCAAAATCCACTTCTGTGGCCCGGTTGCAGAT-TTGCAGACTATACCATATCTTGgagatttttattg---tttg-tgaacAGGAAGATCCTAAGAATACCTGTAACAATGG-------TTAACTTCAACACAGTAGAATTCTAGTCTTATTTGGCCTTAAAATACATC--CTCatccttatttttccct--ttccca---------------------------ttatttttaagata----------------------------tcccCTACTATGCAC-----------------------------------------------TCCAAA---------ATAGTTGCACAGA-AAAAGTCCAGTTTTCCACACAGAGAGAAT---CAAATCTGCTT-TCCATGGAGCCATCAAATAGCATGGAACACTAGGCGAGTTACTGAACCTCCAAGCCTCCACAACCTCGTCTCTGAATGCAGACAATTATATATGAGCTGTAAAGCTGTGAAC-TCAGATGAGGTAAAATAGGGGAAAGGGTCTGGGTCAGCCTGGGTG-CTGAAGAGGAAC---CTCATGAAAGCATCTGTAACAGCCCCATTCAGTGGAGATCCAGATCTGTGAAAGGGCACCCATTTCCA-ACATTCAGATATTCCAGAGTAGAGTACAAATAAATGCTCCCCATAGAAGGACCACTGTTGCACCCATCCAAACACAGagattt--tttccttccctctttgaACAGTTCAAGGACCAGCTGAAAGGCCACTTTCAAGAAGCCTCAGAACCCCAagt------gatttctctctttcctAATTTCTTCCGTCATACTGCAAATTAGGTGGTGTGCTCTAGC--------------TATATAATTCTCACTGTAAATGTTACATCTCCTAGATTTCATTATGAGATTATTAAGATAGAGCATTC-------------------------------------AAGATGACTGTGGAACGACTTCAGGCTCACTAGAGTTACCTTGATTGGATTGCTGTCCTCCATCCATTCACTTCATGACGATCAGTTCTACTAAGTAATGCAGAGTTCTGCTAAGGAGGGACAGGCTTG-GAACATGAGATGACTGAGACTGGACCAAGGTCAAAATTACTCAGAGTAGATGGTTTGGATAAACAGCAGGCAGC

a score=30747
s chr3           159147336 1614 + 160039680 CATATGTAGACATTTGGGTGGGCCCTTCA--GCAATCAGAGGTTTTA------------CATATTGTTTTTAGATTTAACATCTAGCACCTTTATAATGTCTGACAAGCTCTA--GGTGAATGCACAAT----ATATGTAAGATAATAGATAATAGATGAAAAGAAAGGATAAACAGAATGGAAGGAGTAAAGGAAAC--ATTTGAATTAATTTTTCCAGGGACATTTTTTTGGGAATTTGTGGGCTAT-----GGTCTGAAAGAATGATTTTTCTTTAATATGGAGAATTATT-TGATGTTTCATCTATAT-TTTGTCTACCTAAACAATGAAAAGAAATTATGTTCTTGAGTTAAACAAATTTTTCATTGATACTTGTGCTTGTAGGCAATTCTGCTCTAGAGTCATCTCCCCTGTGGCTTATAGCATATTTGGTTGCTAAAATCTATTTATATTAACAATGTCTCCACAGCCTAGGATACACATGTGAATATAGGGATGAATCAAAAACTG-ACTAGAAGAAAATCATAGAACAC-AAATGCAAATTTTGTGTTAGG----ACTCATTTGTTCACTCATAAGCTGTTTACCGACCATAAATTTATTATCGACAATGTACAGGGCCTTGATCACTGAAATA-ATGAATGAAACCGTA-TAAGTTCTTTGCTAAAGGAGCTTTGTGT-GTAAAGTTAAATACAAGACAGTTATTT--------CATGGATTCCTGAGTTATAA------GGAAGCACAGGGAAATA----------CAATTGAAATCTGGAAAGGAGGGCTTTGCAGAAATACTTTCCTCACTCATGATGAAGAAAAGGCTACACTAACCTCACCACCTTCTGTACTTACCTTCATGCATTATTCATCTgtactatgtcaagaatttggcatcagttaaatggtttctcttcaataataagcatctaagatagtactatacacattatagttggagaagtacagtattagcagagttaaagaaattt----tacaagatataactgttaagaggtatcaaaattaggttgcattg-ctccagactttatgctcataactaataGGGACTTTGTCTCCAGTAGTCTGGAGGAAGGATTTTTATGACTAAATGGAGCTACTGATGGGAAAGCACATGAGGACA-ATCCCAGAAACCACAGTATCCAGATAAATCACTGGAAAATGCAATG--CCTTAATTTAAA-----ATCCCAATTTCCTTTTGATAGTTTTAGCCGAATAATATTAAATACAGTCC----------------------------ATGAGTCAGATATAAGATCCAGGGTAAAATAGAAAC-AGATACAAAGAATAGAGTCTTGGGAATTATAATTATG---ATAGAAACAAAACATATTAGATATTTCAATAATGGACCAGAAGTTAAAGTTAAGAGAATGTCTGAATAACATGATTAAAACTTT-TAAAATAATACAGAAAAATTTAAAAAC-------------AACAATAGCAA---ACATTTTAAAAAC--AGAAAATAAATAAGAAATTTATATTGAAATCTCAAAATATTTCTGAGAATTTTTA-AGACACCTATTTC--TAATTGCAGGGGTCACC-AAGTAGCATGCATCAATTAAACAACTAATTGGACCTCTTAGAACAATTATCAAAATGCAAAGATTACAGAAACTTATAGAGAATAAAAGACAGAGGTtatatatatatatatatatat
s HiC_scaffold_1 146397144 1634 + 233722169 CATACTCAAAGCCTTATGTGAGCCCCTCACTACAAGGTGAGTCTTTAAGAGCAGAAATGCTTGTAGCTTATA-ACTTAATGTCTAGATCCTCTGTAATGTCTGTTGTGCTCTATAGGCAAGTGTACAatgaaaatgcacaaaataa-----agTGCATTAAGGAGAa-----------atggaaggggaaaaggaaatctGTTTGGGTCAGCTTTGCCAAGAACATCTTTCCGGGAGCAGTAGGGTTTTAGTTAGGCCTGAAAGAATGATTATTCTTTAATACACAAGGTTATTCTTGTGCTTCATCTAGATCTTTGTATATccaaagaatagaagaaaattatgTCTTTGAGTTGAACAAATTTTTCATTGACATTTGTGCTTGTAGGCAATTCTGCTCCAG--TTATCTCCCTTGTGGCTTATAGCATATTAAGCTGCTAAATGCTATTTATATCAACAATGCGTCCATAGCCTCTGA-GCAAGTGTGGCTGCAGGCATAGgagaaaaacttcactgaaaacaAGTTTTGGCTCACAAAATGCAGACTTGGTCTGaggattcattcatttattcattcaaagattATTGAGTGAGCGTTAGTGTGATGCAGATGCTGTGTTAGG-------CACTGAGATACACAAACGAAAAGATATTAAGGTCCCCCTTCAAGTATCTTTCCATAGGGTACTCGAATACAAAAATAATGTTCAAGATAAGCATGGACAAGTGCAGCAGAAACACCTAGTAAAGCAGGAAAATAAACACCTAGGTACACGAAGGCAGTCAAGAAGGGCTTTGTACAAACATTATTCTAGCTGATTCTAAAGAAAGCGTGGCAATACCCCTGCCACCAAGAATAAGTGTATCTATGGATCATT------TACTTTGGC-----CTTGTCATTAATTATGTGGTT-----------GTAGG-----AAGATATTGC-ACTCATTTTATAGTTGAAAAAAGAGACCATTAG-AGAGATCAAGATCCTTGCCAGCCAAGAAGTAAC-ACAATCAAGTCCCAGGATCAGATCTCACTGACTTCAGATGTCATGCTTATCAGCACCAGGAACCTTGTTCTCAGGGACTTGGAAGAAAAATTGTTAC-AGTGAATGAGGTCAATTATGAAAAAGCAGGTACAAACACCTCCCAGAACTTTCTGT--------------------CATACAATGTCCTTTAATTGGCACCTCCACCCCAACATCC-TTTGACATTTTCAACTAGCAGACACTAGATAAAGACCCCACAGGCTGTCATTGTTACACAGTCTGGTGACGCAGGCATAggaacaagaagaaaaggaaagcaagataaaaagaaatagtaCTTGGgaattaaaagtaggaaaacagaaac-aaacatatCAGATGTTTTTA-GATGGACTG-----TAAAGTTGA-AAAATGtccaagaaaaat-actaaaactttggaaaataatagacaaaagtaagaaaattaaatcagtgCAGGACAGTGGCAAAAGAAGTttcaaaaattaggaaaacaaaggA-----------TGCAATAGC---------CCAAGAATTTTCCTAGACATCTGTTTTCATACTGGAAGGGGTCACCAAAATTATCTGTGTCAGTGTA--TATCAAATGCATCTTTTAAATCATTTGGCATAAAGCAAAGGTCTTCAAAGCTTATGAAGAGAAATAAACAGGGATCAGCTGcgtgtatttaaaaat

a score=53672
s chr3           159149236 2143 + 160039680 CTTTAGTGATTTCAACACTTTTCACATTTCCATACTTGGAACTGAGTTCCTAAGATGTGAATGCCTGGTGATATATACAAAC--TATCTAAATCACAGAATACTGATACCACTGATCACTGATAATGCCGTATACC---CCTCAT----------ATCACTTAACCAAAAATCAAATAGCTAATAGG-----------TCTACTGTACAAAAAATATTACAGAAATGAGAAAAATCTTAGCAATTGCA--TTTATTGTCTTCAGTTACTATACACTAGT-GTAAATACCAACTGTCAGCAAGTACA-CATATAAAAATTGAGGGTGAAATTTTTAACAGCCTGAATTTAGGCTTATGGATTTGGAA---AATGGAGAAATTTAGGAAAATAGTAA----------------CATTTTTATTCAGCTGGAGAGGTGTTTGAGGTAGTCTTTAGTTTGGAAACAAATAGTTTTCAAAAGCTATAGCAAGAAAGCATGTAAAAGTATTTAGGAATAAAGGCAGACATTTAAA-GACTAAACCTCAATGA-AATTGAGGATAAAATAC--AAGTTTGATATGAGAGGTCATATTTGCTTAATTTGCAAAG--AAATAGCTTTAAATAAGAGTCATTACCAT---------TTGTTACCTTGTATAAAGACATTGAGGTATATGCAGCAGAGGTGTTAAGGAGATCACCAGACTTATGATG-----------------TGTCACAAG--ATCTAGTTATCCTGCTCCATGTCATC-ACAGTCTGCCAATTTGAGAAATCATGTAAAATCCTAAATTCGACAAAACCAACTGAGCATGAATCTAGAGAGAGTATAATGAGGATGAAAAAAGTCAGATCAAAC-TATCCAACCAAGAAAACATGGTAGCAGTCCTAATTAAAGGCCATTTGGAGATGAGAGCTGCAGCTGTCTGCAAA---------TTGAAGATACAGGTTTACAGGCTATAAGGAACAGCAGAATTTAGACCTCCACAGAGCTATCTGAAATCCTGTTCCTGACCCAAATCCCCATGGACAGGCTGTATCCAGAAGTAACCTGCTGCCTTTCAGAATGCTATTTCTTTTACTGCTTTTATCTCACCAGGTACAGTATCATCACAAAGCTCAAGA--GAATAAGAAGCTGAAAATATCCCTTTAGAGCATCTTCACCGATCAGGACAGATATTTTTAGTAAGTGATCGTCTGTCAAATATGAGTCACGTGGCATGTCACCTTAATGATCTGTGAGCGTTTGCAAGTCCCTGAAAAGTGACAGCTGCAAATGAGAATTTAGTAGGTTCCACTAAGCAAGCAGAGCATTGATCAAATATATTGACAGGAGCCATAATCAAAGCAAAGTGTCAGTAGAGAC-----ACTTAGAATCCTC--CAGGTGATGAAGCACTTTCTGACCAGGCACC----------AGGC---AGAACT--ATTTCTGGAGTCTGGTTAATGCTGTCAAAAGCTGCCACACGTTGGTTATTTACTACATTTAAAACATTTCCCCTCATTGAAAATTTGTGATTAAATTACATTTTAAAAATATATGAAATGTTAATTTCTGTATGCTTTATTCTTCGTGAAATTTTAAATGGAAG-TCTTGGTTTA--TGTACTTACTTGCCATTGACATGCTGCATTAGAGACCAGAAGTGTTACTC-TCTTTCCTTGCCCTGTTCGATGTCTGTCATAGATGGCAAAACCCATGTGGCTAGTTATCACCCGTCTTAAAACAAGGAGATTTC---CAATTC--CTAGTTTCCCTAC--AGACCTGTGAAGAAATTTC--CTGAAAATCTTCCTGAAATTGGTTGTGTTTGACAAAGATATGGTTGACTGGGTT-------AAAACTG------AAATGAATAGGATTGGGCATAATGCTCTGGGTCATATTTTGTTTATCCCCAAGGGCCATAAAATGATGCTAGAATAATAACAGCATATTTGTGTAGGGATGCTCAAG-------TCCCCCTTTTATACATCTATTCAATGCAAAGCTGCTAAATATTTTTGCTTCAGTATTTATCATCTTTGATTTTTAGATCTACCTATAATTATGTCAGCTTCCATTAGCTTCTCCCTTTAACTTTTATTT------ACTCTTTTATCATG-TATGGTTGTTATAAGTGGTTTTAAATTTTTCCCCAGAATTCTTTTTTTTTTTAAAGTAGCCCTCTTTTAGCCTG--CTAGACAAATTACTCCATAGAACTTCTACTTCTGAATCCCTACCCTGTAACTCTGGTGGATC
s HiC_scaffold_1 146405238 2217 + 233722169 CTCTTGTGGTCCCCAAACTTCTCATGAGGCCGCGCTAGAGATCAAGCTTGCAATAC-TGAACTCAAGGGGATGCAGGCAGACCTTATCCAAACCAGAACAGACTGATACCACTGATTACAG-----GCTTTCTGACTGGCCTCATTGTCTGGGTGATTACT-----GAGGTCCTCATTATTGATAGGATGTAATGCAATTTTAAGCATTGAGAAT-TCACAGGTGGAAGGGAAATTT--GCTATTACACTTTTGTCATCCCCAATTATGATAAAGTATTTGGCAAAACCAATTGTTGGTAAATATAGTATATATGTTATAAAGGTCAAACAGTTAA--ACATAACCTTGGGCTTCTAGACATAGAATAAAAGAaggatatttgaaaatttaataaatcGGGAAAGCTGATTTATTGCTATCCTGGTATAGTCTTTATTCAGGTGGAACTCAGTTTGGAAACAAGTa-ttttcagcacaaataaccAAAATATA-----AAGCATGCAGTTATAAAGTCAGACACTAGAATGGGTAAATCTCAACACTAGCTGCAGTTAAAATTCCAAAGCCTGGAGTGTAAGACTATGTAAGTATAATTCACAAGGCAAGACAGTTTAAAAGTTGAGTTTTTATCCTGCTTGCTGCTTATTACTCTGCTAAAAAACCTAAAG---CATGCAATAGAGAAGTTGAGATCATAGGCTGATTTGTGATGATGTCTTGACGCCTAATTCTCATAAGgtatccagccttctctgcccaTACCATTTACTACTCGTCAACTTGAGAAATCATGCAAAGTCCTAATCTCTGACATACCAATTAAGGATGAGTCAAGAGAGACTATAATGAACCAGAAAGAAGTCAGATCAAACCTATCCAACTAAGCAATAGTGACATCAGCTCTAAATAAAGGCCATTTGGAGAGAAGAGTTACAGCTGTCTAAGAAGCATAGAAGTTAAGAGTGCACATTGACAGG-TCCAAGGATCAAGCAAGATGAGACCTTCACAGAATTACCTTGGTTCCTGCTTGTGACCCAAATTCCCATTGGCAGGCTGTGGACCACAGTAGCCTGCTGCCTTCAGTAAAGCCACATCTTCTGCTGCTTTTAACTCACCGGGTACAGTGTCAtcacagagagggagaaagaacaaGAAGCTGAAAATATCCTCTTAGAACATCGGCACTGAGCGGGACAGATATTTTTAGTCAGTGATTGTCTGTCAAATCTGGATCACGTGGCATGCCACTTCAATGATCTCTGAG--TTTGCAAGGCCTCAGAAAGTGACAGCTGCAGATGACAATATAGGAGGTTCCACCAGGCAAGCGGAACACTGATCACATCTATTGGCAGAAGCCATAATCAAAGCAAAGTGTCAGTGGAGACCTTGAGTTTAAAATCCTCCTCCAGCTATG-AGTACTTTGTGgtcaggcattttcaacattaatGTTTAAGAACCCAATTGGCTGAGTCTGGTTAATGTCTTCAagaactgtcatgctttgactgTTTActgcacttaaaatatttttcctccttaCAAATGTGTGATGGACCAACATTTCAATAATAGATAAGATGTAAATTGCTGCACATTATGTGCTTTGTGAAATTTTAGATGGACGTTCTTGGTTCATCTGTGTTTCCCTGTCATTGGTCGAGTGCAGGAAGAATCAGAGGCAGGACTCATTCCTCGTTACTCCACTCCATGCC-----------ACACTGCCCAAATGAGTGTTTATCA-CAGCCTTGGAGCAAGGGCATCTCTTGCCTTTCCTCTGTGTTACCCACGGAGACATCTGGAGGAGTATCCACGGAGAATCTGTCTGGAGCTGCTCCTTTCTGTGAGCGTCA--GTTGAACAGATTCTTCAAAAAGGCTGCAGAAAGAATGAGTAG--TTGTCTGTACGTCTCTG-------------TTGCCCTAAAAGACCTTACAGTGAGGCCAGAATCATAACAG--TACCTTGGCAGACATGCGCATGAGCTGGTTTTTCCTTTGGTTCCAATCTTCAATGCAATGAT--TATCcatttttgcttccatttttattaCCTTTGGACCTTAAATCTGCTCACAGCCACGTCCATTGCTTTCAGATCTGCCCACTGTTCTCTAGCTTCAGACACACCTTAGCCTTGCCATGG----TACAAGCGA--------TCCTTCCCAGAACTGTGGCTT------------CCCGACTGTACTCTGCACTGAGCTGAGTCCCTTTTGGAATTTCCATTACTGACTCACTGCCCTACAACTCTGGTAAATC

a score=10357
s chr3           159156189 590 + 160039680 gagaaagaaattatggaggcaGAGAATTTTTAATGTTAGCGTGAAAATATGGTAACTCTGTAACTACGTGAGAAAAAATTCCCAATTCAAATTCAAATTT-TCCATTTACTTTATGGAATACA------AGCACTGTATATGGCATCTT-TCAGAATCAAAGTTTGTATTTCCATTTATCTAAGTCAAGAAGTCTATGTTCTT-GTATTTTAAGGAGTAGCCCATGAAAAACCAacacaaacacacacacacacacacacacacacacacacatacaTATATATATATTGTTTAAAATAAAATGATGTATATACATATATTGTTTAGAAAATGTAAAATTGTATTATCAGTTTGTTTT-TACAAATAAGAATTTTCATTCTATAG-------------TGTTTCCTAGCTGCAATACTAGAACATTCAA-AGAAAGCTGAATAGATAGAGTCCCTTGTAAACTAAAATGATTATGTTTTCTAAAATGAAGACATG-------------CCTGTAGTATTTGCAAAGTGCCAGTGGCCAGTTTTAAATGGACCATGCTTCAGTTGCAGCAACACTGAACACTTTGCTCAATGAAAAAGTTCATACAAGGCCATTTAAAGCAATGTTTC
s HiC_scaffold_1 146410983 553 + 233722169 GAATAAGCAGCAGTATAAGCAAAATATCTTTG-TGTTAG---AAAAATAGGGTAATTCTGCAGCTGGGAGGGAAAAA-TGCCCGATACAAATTCAAATTTCTCCACTGTCTTT---GAAGGCACAGGGCGGCACTATACGAGTCCTCTTAGCACAGCCACAGCTGGT----CCTCTTGCAAAGCCTGGgaaatctttgtttttcatattttgaaaagcaGCCGATGAATGCCCAGCT------------------------------------TCCATTTCAAGCAATTGCTATGGGTAAGAA--------------------CTGAAGattgttaaattttattgttaGGAAACTTTCTTCAACTAAGAAGTCTCACACTGCAGAGGAGAGTTCTCTTGTTTTGCAGCAGCAG----AGAATGTTGGATGGAAGGATG--TGGGTGGAGTCCCCTGCAGGTCAAAATGCTTATGTTGTCCCAAAAGAGGACACGGCCCTCAGCTTCTCCCACGGTATTTGCAAAATACCGGTGACAGATTTTAAATGTACTGTGTTGTGGATGCTGCATTGCAGGACATTTTGCTCTCTGCAAAAGGTCATGCAGGGTGATTTCAAGAGATGTTTC

a score=29685
s chr3           159197073  962 + 160039680 TAGAGTAGATGGAAA-----TGGCCACAAATAAATAATAAATGAAGCAAATAAGATG---------------GCATAAAAGAAGAATCAAGATTCAGTCATTAATTAAATGTG--------------TGAGG---TGAAGGAATGATTCTTAAC-TGTGAACATGATCAATAAATTCTTAATG--TGAACATATTTTTA------GAAGATGAC-----------TTGACCTGACTCTTA----CTCAACAGATGCACAGGTAATTGTTGAGTGATTGAATCTGGCTCAGGAGAAAAAGAGCAAGACTAGAGATAAAAATAGAAGCACAGTGAGA--TCATCATGTTGAGAATATCCAGGGACTAGGAAAT-GTAAGAATGCTACTGAACTTGTTAGAGTAAAATTGTTCTTCAGAGACATGATTCTTACAAGTGGGCTATTCTCACCTCAGGGATACAGGAGATGCTACTAATCTCTGAGAACAGCTTCTTCAGTCTAAAACTCACCAAGC-----------------AGAGTTGATGAACAACTTCATCACTTCTTTAATGATCCTTTGGTGGAGCTGAAATGCATTATAGCTGCCACTAGTGTCTTCCCTCTGGGAGGTTGCAACATTAGACAAGTGTTTAATCCATGTAATACATGAACTGCATCTGTGAATATGCCCTTCATAGCAAAGGCAAAGCAATAGGTTTTTAGTGTCCAGAAATATCAGAAAACTAACCAAATATTCACTTGTGATGGAAAAAAAAGTGCCTTGATTTGTGAGGAT--TAAACAC-ACAGGGGTTGCTCATCATTGCAGATTAATGAAGTCACCAGAACCATTTAGAAAGCAATTGAGTACTTAATTTTAATTAGAGCTTTGATTGGTATTATTGAAATGAAACAAGAGAACTCACACCCTT-ACCTCCTAAATGTTTTTTTCTCAGTGAAACAATAATTATTATATCAGGCTTTAGTTTATTATTTGGTCTTTTATCAGATTATGCATAAAATAACTGCCAAAGAATAGGGTGTTTCGGGCAGAG
s HiC_scaffold_1 146427964 1014 + 233722169 TATAGCAGATGGAAAAGACATGGACAAGAGAATGTCAGAAACGTGGGAAAGGATAGGACAGAGACATGCAAAGCAGATAAAAAAAATCCAGACCTGGCCAGTGATTGAATGTGGACACCAAAGGAAATGAAGACATCAAGAAAAGATTCTCAGCGTTTAGATGTGGATAATAGAGTCCCTACAGATGAGCATATTTTGAAGTAAAGAAAATGCCCACTGAAAATGTTAGTCTGATTCTTAGTTATTTAACTAATGTATTGGATCTAGATACATGGTTGAGTCTGGGTCACAAGAAAGCCAACAGGGCCAGAGGTAAA----GAATGAGAGTGAGAAGGTGTCATGCTCAGATTCTGCAGGGAAGGGACAGTTGGAGGAAAGCCACC---TCTGGCAATGCA---TGGTTATTTAGAAGTACGATCCTTACA-GAGGGCAGCTCTCACCTCAGGGATG--AGAGACCCTACCAGTCTCAGAGAGCTATATCTTCATCCTTCAGTGCAGCGAGTTCCAGCCGAGTGCTTTGAGAGCTGATGAGCAACTTCACCTCCTCTT-AGCGCTCCTTCAAGTGAGCTAAAATGCATCATAGCTGCCACTGCTGTCTGCCCTCTGGGAGTCTGCCGTGTTGGACAAGTGCTCGG-CTATTTAAGACATGAACTGTGTCTGAAAATTTGCCCCTTGTACAAGAG---AAGCAACGGGTTCT-GGTGTCCAGCAATATCAAAAGTCAAACAGAAATTTGACTCGTACT--------ATGTGGCTTGCCTTGTCAAGATATTAAATATTGCAGAGGTAACTCATCACTGCAGATTAATGAAGTCACCAGAATCATTTAGAAAGCAATTGAGTGTCTAATTTTAATTAGAGGTTGGCTTGCAactattaaaacaaga----aaaattcacaCCCTTCACCCCCTGAATG--TTTTTCCCACTGGAACAACAATTAGTGTGCCAATCTTTAGTTCATTAGTGGGTCCTTTATGAGATTATATATTACATGATTTCCAAAGAAGACGGTGTTTTAAGCAAGG

a score=23621
s chr3           159252555 1413 + 160039680 AAATAAGATGGAAAGATTGAGGGAGAAAGAATGAAGGAGACTCAGCAGAACCCCAGGAAAATGAAAAGAAAGACATAAA----TACAACATATATACAGATATGTAGTCTTCTTT-------TTTCTCCATCATGGTATGA-----------CTT----GTCTCAGATAT-AGTTATATTTAGGCAA------------------------------GTCATGATAGGAAAGGAAGAAAACCAGCCTGGATTCTTTGTCATATCCATTTACAGCTTCAGAAAAACCACTGTAGCTTTCTTTTAATTTTTTTATGGCAGAGTAGGTTTAATCTGCTAGTCAATTTCCTTGATCTCTAGGAAGCTTTGAAGAAATCAGAATATATGAAACTCCACACCATATCTTTATGATCATTATCAAGAAAACAGTGCAAGCTCTATACTTTAAGGAGC-CCCTAGAGATACACTACAAGTCCATCTTCCCCTGAAAAGATGGCCTGAGTTGGTACCCACAAGACTATGATGCTGTTAGGAGAATGAAT-GCCCAGATGTAGTATCTGTGTGAGGAACAGGAAGTGAGATATGGCTATGGGTAGAGATCCAACCTA------TCCAGCTATCCTATTTCATTTTATGAGAGATGAGTCATTCTATACTATAGAATGATT-CATCTCTTTACATTTCAACATCA-ATCTTTC-ATCATAAGGTAG-----TCTATTTAAATGTCACATTCCACTCTACCTAAAAATGGAAATTTCCAGGAAATATGCTTTTTGAGAAATCATAAAACTGATAT--------AAAAACTAATTTCTCCTGACATAAGAAT-GAAATATTCAAAATGATTATTGGA-AAAATATTCTACCTCATAAATGAATTACCGTACTTA---TTTTTATGGATGATGAAA---AAGAACATATGAACCAGACAT-GATACTTCATGGAGAACTTCA-AAAGAAACTGAT-TCTTTAACACTAAATCTATTATATTTTATGAAAATATACC--AGAAATTTATGTTTTATTTATAAAAGATCAATGGTTTTCACAAATCTT---------CTTGTCATCATCATATG---CCCTAAACTAACAGTGAGAGGAGCT-GGTAGACATGAGTCAATCAAAATGATACTGGCACTCATCATGAGTCTCAGATTGATGAGGTCTCAGA---------TTGATGTCCCACTGCCAACAAGGCCATGTTTAAAGCGCACAAATGACCACATACAGTTTTG---------GCAGATAG-----TTTTACAGGATAAGGAAATAT------GTTCATTGATCT----GTCAT-TTTCTCAGTAAACTTTCTCAAG-AGTTCTGAACTTAGGTTCTCAATAATTTCT-TCTATAAAAGCACATTCATGATAA-----ATTTTAAATTGTAAAA--CAATTTTAAAGGAATG--GATAAATCAAAGGTATTTACAA-TATAGGAAACTGCTATCAAATTTTTGAAACACTCAT------------------TCCTTCCTTGAGTTCCAGAATGTCTCCACATT--CCCTATAACCATTATGGTCCT
s HiC_scaffold_1 146483093 1501 + 233722169 AAATGAGGTATCCAGGttgagaaaaaaaggcaaaagctacataaaaagaa----aaaaaaaagagggggaaaagacaaaacaatgcaatat---tatGGATATTTAAGGTTATTCATTTTACTTTCCCCAACCTGGCATGAACCTATGAGACCTTACAGGTCTCACAGGTCAGTTA-ATGTGGGTAAACAGCCCAGATACCATGGCTTCGTGGAGCAGTTGTGATAGGCTGGTAAGTAAACCAGCATGAAACCTCTATCag----------------------------gcaactatttttaaaaatct----agagtgGTAGGTTTAATCTGCCTGCTCGTTTCCTTGATC-CTATGGAGAGTAAATTAATTCAGAATGTTTCATATTATACA--ACTTCTTTACTGCAATTCCCA-GCAACCCCCTCAAGTTTTTTGCTTCAAGGAGCACCCCAGAGAGATATTACAAGTTCGTCTTCTCCC-AAGACACCGTTTGAGCTCGATGCCTTGAGGCTGTGTAGTTCTCCAGAGAGCAAATTGCCACTCTGTGGCACCTGGCTTAGGAATAGGAAGCAAGGGATG---ATGGGAATAGTTTGGCTCTAGAACCTTCCAACCATCCTATT-CGTCTTCTCTGCTGCATGCCATGCCATGCTATTGAATTACTGCTCCTTTTTCAATCTGAACACCATATATTTCCATCGTAAAATAGACTGTTCTGGTTAAATGGCACATTCCACTTTATCTAAAAACGGAAACCTCAGAGAAATGTGATATTTGAGGAATCATAAAAttgacatttaaagaaaaagactcaTTTCTTCTGCCATGAGCATAAAAACTTTCCAAAAGATCATGGGAGAGAATCGTCTGTCTCATAAATGAAATGACACACTTGGCTTTTTTATGGATGACAAAAGTCAGCAACTTATAAACTAGAAATGGGCATTTCATGAAGAACTTCAGAAAGGAACTATCATTTTGAATATTAAACCCATTGTATTTCATTAAGGTATATCTTAGATCTGTGTGTTTTATCTCTAAGAGATCAGAGATTGTCAGGTGGTTTccctgagcacctgccttgctctGACATCCCCCTGCACTAACAACAAGAAGAGCCAGGCTGAGATGGGCCCGTCCAAGGG-----------CAGCAGAGGGCAC-------TGAGGTCCCAGAAGAAACCCTCTTCTGTTTAACTG----AAAAGCTGT--------CCTATGACAGGCAACAGAGAGGTGTGGGTAGAACAGGAGACAGCCAACTTTTCCAGAATAAGCAAGCATTTCTTGGCTCCTTGATATTCTAGCCATACTTTCCAGGAAACTGGGTCAAGTTTTTCTGAATTTAGGTTCCTAATCATTTCCATCCATAGTC-CTTATTCTTGATCAAATCCATTCTAGAATAAAAAGGCAAATTTTACAACAGTGTTGAT-ATTCAAAGCTGGGTACAAGTAT----ACCTGCTATCAAAATGTTGAAATCCTTCTCTAACACTTGATGAAGGACCCTTCCTCAGAGACCCCAGCTTGTCCATGTTGCCACTGTAGCCACCCTGGCCCT

a score=7797
s chr3           159254968 373 + 160039680 GGTCTTATCCCTAGGAATTTTAGAATATTTTACTCTTTG-----TCTTTAAGAATTCAAATCGGGCACCACTGAGAGATGT-GGCCCCACAATACTGTTAATACTCACCACTGGTGCTTTTTCTAATTGTTTGGTTCTCACCTTTATAGCTA--AAATATTAAATATTAGCTCCTTAGAAAGGACTCTAGAAGGCAATGGAACTTAAATACATGGGTTGGTGGTGCATG-CAGGAAGCAATAAGAAATGAAGAAGTATAAGAAGCTGGAGAGCTCCCACCTCTTAATGAAGCAGTTGCTGTGTGCTTGCTGCTATGGGGGTATGTGGGCAAAGAGTACTC-----ATTATATTTCAA-AGAAGCCAAAAATAGTGACTTTGTTGCAAA
s HiC_scaffold_1 146484588 363 + 233722169 GGCCCTATTCCTAAAATCTTTT--ACATCTTCCCATATGCCAGCTCTTATAGTATCCATGTCTGGCCCCA--GATCCATGTCTGCCCCACAATCCCACT-----TCACCACTCTATTTGTTTCTAATTGGTGTTTCTTGGCTTTTCTAGCTGTCGAATGC---ATAGGAGCACTGTACAAAGAATCCCAGAAAATAACAGACTTGAATGAAGTGGGTGGCTGCAACACAATGGGAAGTAATGGGAAATG--------TGGGAACCTTGAGAGCTCCCACCTCTTAAAGAAGCAGTTGCCATG---TCGTTGCCATGGAGGAATGCAGGCTGAAGGTACTCTGCCTTCCATACTTGAAGAGAAACCAGGAAATGTGA--TTGTTACAGA

a score=12376
s chr3           159261374 1102 + 160039680 ACTTTGCTGTAATTCTCTCCAAAAAATAACACTGAAAAAAATGTTTAAAGCCAAAATAATGGCATTAAG----ATAAAA-----CTGTAAAGTGCCTTGGCAACTTGAAGGTGATGAATCACTTCTTCAATTAAC----TTG--AAAGCAAATCATCAAGTGTGTGATTAATATATTTCACCTATTCTGGAAA---------------------CATGAA---TAGCATCTCC--TATTTCTCATTTTCAATCATTCATCCAAGTTATGATGACTTTTTGTGTAAAATATCCAGAAACTCAAATTATTAGTTAATTACAGGAAACCAGGAGATTTCAAG-AGTTGCTTTGTATTTGTACTATATAGTATAGCTCTT-CAACATATCAGGCTTGTTGCCTTTAGTTGGCATTGAAAATATTTATCAACTTTGATGAACTAAGAATCACTATAGCATTCTTAATATATACATTTTTTAAAACCCAATAGTGGTGgggtgtggtaatatatgcctataattccagaacaagggttgtagagggagggggattagaaatttaaggtcaccctcatcgacatagcaaagtttaaagctggt--ttgtgctacataaaattgtctaaaTTAATAAATTAGC-------------TAGTTAA-------TTATTTAAATAAGATTCAGTGAATTCAGTCATATCACGTGACCAGAGCAAA---TGAACCTCCAATAATAAGATCTACTATACAAATAAAG------------ATTTTG---------AAATGAGAAAATGCAAATATTTCCAAGTTTTTATTGTTTATACTTTAGGAAACTTGGAGGTAAAGGATGTGGTATGTAAGCTGAGGATCAAATAATTAAATAAGTATAGATACACTATCTAAGCTTAGTTTAGAACCAATTTTGTTTA--CATAGCTCTTATTGTCTCATTTTCCCAAATCAGATATAAAATTCTTA-TGCTCTCCATCTACCTTTCAGAATTGCCATCTGTATACATAGTTAAGTTTCTACCT----TACGGTCTTTTTGATCCATATATTACCCATTTCCTTGCAATTTCTGCCAC--TTCTAAACTGTTTTACAC-------------ATTTTATAAAACTTAGCT---ATATACTAATTTTATA--TATTAAAAATGTTTTGGCTCTTCATAGCAAAGGCTTTGAGTTGCAAAACTCACAATTT
s HiC_scaffold_1 146492575 1081 + 233722169 ACCTTCCCATAATCC--------AGAcaacattttaaagaatgttttaaacTAAGATAACAGCAATAAGTCCCAGAAAAGCATtctactgaataaaacaaaaagttgagTATG-----TCACCTTTTCAATTAGCACCTTTGTTGAAGTAAATTAGTAAATGGGTGATTAACACATCTCACCTATTCCGACAAGGAGATAGCGGATCCTGGTGGCAGGAAGGTCAGCATCTCTCATATTTCTCAGCCTCAATCACTGGTTCACCCTCTGAATGACTTTTATGTGAAATGTCTTGATATACTAATTATCAGTGAGCTACAGGAAGCCATGAGATAAcaagttgttattttgcatatggAGTATATTTTCTGGTTGTTGGGATATGACAAGGTCTTTGCCTTTGGTGGTC----AAAATATTTATCACCTGTTATGAACTCAGAGTTGCaaaggcattctttttttttttttttttt-------------------tttttgtctttttcgttttta--tcggtaccagggatcg-------------------aactcacgactgcctgc---------------ttgcaagcaggtgcttatgccg-----------ctaagctaaacccccagcccccgcaAAGGCATTCTTGATCCAcccttttttaaat--gtttccatgAGCTCAGAGTCTTCACATAAGCACAGCGCAGGGTGTGCTCACGA-AATGCAGCCTACGATG-AATCAAAGCAGTAGTGGTCAGTTTTGCAAGACTGCAAGGAGTGAAACACATATGATGGTGAATGTTTATTGTTTGTGCTTTAGAGGACTTGGCACTGAAGGGTGTGATGTTCAGGCCGAAAACAAAATACTAATAT--------------------------GTTAGAaatctgttttgttcatttatgtctctcactatcttgtttgcCAAACTCATGTCTGGAACCCCTAGggttccctttcctcctctcagAACTGCCCTC------CTGAGGTAGCTTTGCACATCCACTGCGGCCTT----GTCCAGTTAGGCCCT------------CCTCTGGCACCGTTCCAAAGTCTTTTCCTTGGCTTCAGGGTTAGTTTCATGAAACCTAGGTATGATGTACCGTTTTCATACCCAACAACAAAGTTTTGGCTTCTGATACCAA--GCTATCAATTCCAAACTCCACAGCTT

a score=21751
s chr3           159267744 749 + 160039680 TGATTGAATTTGTGATGAAGGAAGCAGAGATATTGTTCTAAAATTTGCCTC---AGAAAC----ACTCATCCAGACAATGGTACT-CTTGTCACTTGTACTCAC---TACTGTCTAATGAAAGTACTTACT-TTCAAAGTACTTTTCTACTTACTGAGTCAAGACCTTTTTATCTTTCCTTTT--AGATGAGCATGTGACTGGCACAGCTAA-GGTGATTTTATTTCCAGACATTACACAATGTTAATTTCATGGGCTACAGAAAGAAGCAGCTTATGCAAATGATCATGATTTTGCCTGGACATGGCTTATCAATATTAAGCGGTTACTAATTCATGATCC--AGCCTTCCTCAACAGGCATGGCTCAGAAGGTCAAGGTTAATTTTATTCTG---CAAAGAGATTTATATTAATATGCAGATAACATCTCTGATTTAGGCTCAGGACCACTTACGCTGTAACTAGCTACGTCTACTATATAAAA-GTCAATGGACTGCAGAGAAAAATCCAAAATAGAAGTCAGAATGAGTGGGT-CATTACACAGAATTCATAGT-AACAAAAGGATGCTAC---TGGAACATGACCTAATACTTTAGTTCTTTCAAACATGTTCCAGATATGTCCCTTCTAAAACGTAACAGTTCTTAGAGAGGAAATGTCATTATTTACAGAGAAATATGATAGTG-TACTCTTGGCAC-CAAAATAAACTTTAGTAGTTTATTTATATTAGTGGTATATATAAGTTATGAACAATTTGTCCTAATGTCTGG
s HiC_scaffold_1 146494714 769 + 233722169 tgattgAAT--GAGATGGTGGA--CAGGAAGGCTGTGTTGGAATGGGCTTTCATGGAAACCTATATTCATCTGGATC-TGACACTTCCTGGCACCTGGGCTCGCACTGATTGTCTCCCGAAAGCACTTGTAATTTAAAACAGTTTCCAGTTTACTGAGCCAAGACCCTCT-ATCTTTTCCTTTGGAGAAGAGAGTGTGACTGATACAGCGAAAGGTGATCGTATTTCCAGCCATTAAACAATGTTAATTTCATGGGCTACAGAGAGAAGAAGCTTATGCAAATGAATATGATTTTTCCTGCACACACTTTATTAATATGAATAGCTTAGCAGTTCATGATCCTTAGCCTTCCTGAACAGGTACAATTTAGAAGGtcaaggttatttttttttttttctcaaaagccTCATGTTAATATTCAGACAACTTCTCTGGAGTA-GCTAAAGATCCCTCCTGTTCTAAATGGTGCCTTCTATTATCTAAAATGTCAGTGAACTTCAGAGCAAGTATGAAAAGGAGATCTGTTATGTCTTCGTGCAGTCCATGGAATTCAGAATGGGCACAAGGATTCTACCTGCGGAACTCAGTCTGACAC-TCAATTCATTCAAAAATGTATCTCACACGTCCTCTGCAATGTACAGCACTTTTGCGAAGGGAACTACAATTTTTCATGGTGAAGGATGCTAGTGACATTTCTTGCGCTCACGAACAACCTTAATAGTATCCATGCATCGATGTCATAACATGGTTATGGATCTTTCGTGTTACTATCTGG

a score=20244
s chr3           159320890 1702 + 160039680 CTTCACATCCACCTTTTTAAAAGGATTCTACCTTTTGAAAGCCAGTCATTCAGGGTGATGATGGCTCTCAAGGGAGTAGGAACCATCTTGTTGTATAGCAATAT---AGTTGGTGGCAAATGCATTAGAAAATTCTCAGTTGTAGCCTTATTACAGCACACAACATTTTTACCAATTTATACATAATTTTAAATTTTCAAAAAGGGAAAAAAAggcattgggaatttagctcagtaatagagcgcttgcctagcaagtgcaaggccctgggttcggtccttagctctgggaaaaaaaaaaggaaaGCTCAGTTTCTCCATAtgtatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattaatatatatatacatatatatattaatatatatattaatTCCCTAACAATACCTCTGGTAATAATTTTTAGAGTCCTACTAAGAAGAGAGTTATTTGAGAACTTAACAAAGGGAGAAAGAAATTCATGAAGGAAAAAGTTAACAGAACTCACAGCTTTTCAGTGGGACACAAAACTAATACAATTTACATGATTCTGGGAAAACAGAGGTACCAATAAACTAAGTAGCTACCAATAACACTCCATTCATTAGTCACTCCCCCATCCCAGTGCCCTCCTGAACTATCAGCTCCATAATGAAAGGAAGTGTTGTGCTAAAGTAACTTGAAATTGCAGTGTGGGCAAGTGACAAATGATCTTCATGAAGTACTACCCCCATACCTCTTAACAAGACTTCAGAAAATTCAACATTATGTACAAATAATATGCTTTTCTGAAAAATCCTCAG-CTATAAGGAAGTCTTATTGCTAATGGGATACA--------CTGACATA----------CTTACTGCTGGACA--GTCTGAAGCAAAATCCACAAGTTCACCAGAAGAATTAAATCTGTCA-----------------------TAGG---AGTGAGGCTAGTTGTGTAATATGCAATTGTAGGACCTGGGTAGGATCTGAGAAAAGCATTTGGGTGTCCATTGGAGCAGGTGAGTCTGCCTAATCCTAAATTCCATGTGAGGTGTTGGCCAGGGCATCCTCCTTTATTTAAATTA---TCTTAAGGCATCTGCCCTGTGAACAGTAGCT-------------AGAATAGACTAGGGAATGGGATAGAAGAATCTCTTCTTTACAGACCCCTTCAGTCTACTGTATGACAGACATCTGGGTAATTGTAAGATAAGTA--------TTCTAATAGAATAAACACA-AATTTAGAACAAACTCACAGGAAACCTTCCTATAAAAAGAAAATTTAGCTTTGGACCAGAAGAACAAA-AAACATTAGCACAATCAAGTGATGGTAAGAGACAATATCCAGAATTAAGGCCCAGGATGCTATCAGAAAGAGAAAACCAACCAACAATTGTGCAAAGGCCAGGAAATTAGAAACTTGG-GAACTCAAAGATTGGGAC--------TGTGGATAGAATCTAGATACTGTGTA-------AAACCAGCAAGTATGAGAAGAGCTGAGCACATGTTGTCACAGATCCAGGTGCTCAGGAACTCCATATGAAAA---------CCAAGGCAAGAATCT--------------ATAAAACTCTAATGGACTTTCAGCAAAAAATGATGTGGCCTCCTGTGCAATGACTTACTTAGCATA------------ACCATTTTCCAGTGTTTG------GAGGTTCAGTTTTTACCTCTGACACTTGTTAATTATAAATCTTAGGAAAGGCAATTTTGTG---TCTGTCACTGAGT-GTTCATCACATAACCCTCAGAAAAA
s HiC_scaffold_1 146538632 1585 + 233722169 CTTCATATCCATCCTTTAAGAAA----------TTGGAAATCCAACCATTTCAG-TGGCAATATCTAGCAAGATATCAGAAACCATATTTATCCACAGCAGTATTCAAGTAGATGTTG------TCAGAAAGTTCTTGGTT--------ACTACA---------------------------------TTAAAgccccaagaaa--aacaaaatgctct----------CTTA-TAATTAAAAGTTTCACATATAATTTCaaa-----------------------tagaaaagggaaaaagtagaATAGGTTTCTCCCTGTA-----ATGTACATGC-------------TATTTATGGATTGtgttatacataaaaatacatttgtt------------------ctAATGACATCC----TGGTTATTTTTTGAGTCCTACTGAGAAGCGT----TTTGAGAGCTTGACA----GAGAAAGGGGTT--TGGGGGGAAATGTTAACAGAAGTCACACCTCGTTAGTGGGAGTCAAAA-TAATATGATTTACATGAATTTGGGAAACAAGGTTT---------CTAAGCAGTCGCCAGAAACACTGCACAAATTAGTCAGCC-----TGCCAGCGCCCCAGTGAACTATCAGTTTGTGGATGAAAGAAAACACTGCCTTAAAGGAACTAAAAATTGCTGTGTGGGCAGATGGTGACTG----------AGTCCTGCCTCCCTACCTCCTAACAGGACTCCAGGAAATGCAGCTCCATGAACA---AATACGCTTGGCTTTAACCCCTTCAGCCTACGGGGCCCTCCCCATACTCATGGAGCACAGGTCCTGTGTGCCACAGTGGACTCCTCCATCTGTCAGACATTGAGTAAGGCAAAATTCAGCAGTTAACCAAAAGCATTGAGTGTGTCAGGAAGGAACACAGAACTAACAGCTAAGCTCAGAGGAACTTATTTTATGATACACAGCGGAAGGAAGTAGGTGTGATCTGA-------------GTATCCAGTgggccagttatgcctgctt-acATTTAGTTCTAGCTAAGGTGCTCGTTTG---ATCCTCTTTCTTTCAAATCATCTTCTTGCAGCACTTAATTCAT-AACAGGCGCTCGATAGTGTGCTCAGGATAGAACATGG--TGAGATAGGA-----------------------TTGGTCCATT-CCTGACAGTGAGAGGAGGAACTGAAAAAACAGTACACTGATTCTCTGATAGCAGGCACATATGGTTTTATAAGAACTTACAGGTGATTTT--------GAAGGAATTCAACTCAGAACCTGGGGAGTAAGTAAACATTAGCATGAAAAATGGATGGTGGGAAA-AGGATACAAGAGTAGACACCA------TTTCAGGGAGAGAAAATC--------TTTGCACAAAagccaaaagttaaaaaatatggTTCATTCAAAGATCTGAAAAACCACAGTGTAATTGGATTGGGCATTTTCTGTATTTACAGAGAGAAGCAGGTGAGGAAGAGGCCGTGT--------TCACAGATGTGGAAGAT-AGGAACCATGCATGAAAAGCCTTGAATACCATACAATAATTCCGATGTCTTCAATGGGAAAATACTAGAGGGCTTTTA-CTAGGAGTGACATAATTCCCTG-GAAATA----GTAAAGCATAGTTTTTGTGCTTATTATACTCTAACATCTGGCTTCTGGGGTTTAACTTTCACCTCTGGCATTTATTAACTGTGAATCCTAAAACAATGAGTTTTATAACCTCTTGCACTGAGTAATTAGTAATATAATCCCAAGAAAGA

a score=15573
s chr3           159324190 2863 + 160039680 ACAATTATGATAATTTGAATCC----TATGTATTGATAATATTAAGAAGTTATCATTTCACAGAAAATAAAAATGACATTATTA--CATTTTAAAATTCTATAGTATCAAATTACTTGTAAATTGAATAATACATGGATTATAT------TACCTAGTGGTAAGGAG---------------------GATTACAAATTATT-----------AAAATACTCTGAAATAAAATAAACACGTGCtttaaaattttaattttata-ttCATTGAAAGCACACTAGACAAATTCTACTCAAAAATATGTCTTTCCCAAAGAAG----TATGTAACTTAAGT--------GAGGTTATTGAGA------CTTCTG--AAATAATA-----------GAGGTAAATT---TTTAGGACTCTGGACAGTAAAGGTTCAGTA---GAATTTAAGGTCTTACAGAGGGTACGTACGTCAtactgagagctaagtgtgtgctcagaattgttataaacactttatatgattacttcaCAAGAGAAA----GAAATTAGCAGCTAAATAAAACATTCAGAATTCAT-----------AATACTAAATATTAATCAAGTCAGCCTAACCTCAGTAACAGAGCAGAAAAGTGTTCCAATCTGTTATTCTTTATGTGTCTTATGTT--------------TGTTGACAAATTCATCA-TACCACA----GTA-TGAGCACAATCT------------TTCCCAGTTCCTAGAATTCTCACTATTTCCTAATTTCATCTAAACGTTCCGAAGTGAGATGGTTTACTATATACCATGCTGAATTCATTTAA-AGAATGCTCATTCTATCTTTCAAAATAGCACTACAAAATCTATAGTCTTTCTAGTTTTAGTTTTCtatatgtgtgtgagggttggtgtgcatgaggcatgtgtatgtgtatatgtgtgtatacatgtattatgtgtttctgagtgtCAGATGAGGAGAAAGGTGGGTACAAGCATTTGTGAGTCTGCAtgtgtatgtgtgtatgtatgtatgtatgtgtgtgtgcatgtgtTTCAAGAAATTAAATTACACTTCCTAATGTCACA--------------TATATTCCTACAGACTCAAAGTCCTGTGG---------CTCTCTAGATGAAGAGCTATCAAAGtcagtcacctagagaacttgttgatgcacaa---cttgaagcttatctccaggctttctgattttttggatttgagcagattactgagaacttgcattttaacaaattccaaagACATAGCATACTCACC--------------ACCTCCATCTTAGTTCAAATTAGACT--ACTTCACAGAGTAATA-AACTCCT---CCAGAAAACCATTCTTCAAATATTTTCTAGAAACTGTTTTATTGTT---------------------------TAGTATGGC-GTTAACAATA-----------TCATACTCTAAAATGTGC-AATTGATCAAACAACATAGGGCTGTAGTTCTT---GGGTACCTG----------TCCAAGACAGCCT--CAATG------CTTCTCAAACTAGACCAtcaaggactcgagctgagggaatctttgacatctctgacatgtg--tcttcaagtgac-----catttgtgtttcattcatccagaaggaagaaagagttgagaaaacattgaatagaaatttcctccatgttaagtctcaaagggcaaaacacacatcTATCTAAAAAGA-ACCACCATGGCTACATGTGACTGAGTGAGAG-TATAGCATATACTCAAGCCTTGTGCTACAGTAG--GAGGTAGCAGAGTTTGATGAGGATCTT--------------------TTGGTCTTCTTTCCTCTTCTC-------TTATTAGTGGCAGGTAAATATCTTAAATTCCTCAGACA---ATTATTTAGCTGTCTATCTTAGCC-AGCCATAGACTGGTTCCTGGATAT----ATAGATGTGAACATAGTCTAGTTGCTTGGAGCTTATTATGTACCTAGGAATTTGCATTGAGTTAATACA------------------------------------------------------------GTGATTTCATAACTGAATAAGCAATGTAgtttgt-----gaagaca--------------------tgggaattcctatgtaatttgggagctaaattaacacaaataatattagaaccaa--tctacaacaAATCCCAAAGAG-------------ACAAAAGAATCATG-GATCTTTGAAGGACTAAGG--------GTGGTAATG----GGAAGAGAAATGAGAAATATGGTTCCTAT---------GAGGTAGATAAGATGGAATAGACAATACCAAAATGGTTTCTTTTATAT-----ATGTCTACTTGGTG---TGTCTCTCAGTTTATGCTTTCGGTTAGGCGCCAGAAAT--AGACATGCAAAA---TACAAATAAGGTCCAAGACTTATGGAGACTATAACCTAGTGAGTAATACTTTTAACAAGTAGTTACCTACAAAATCATTTACTATAAACTTACATTAATGACTATATAGTATAAAAATG--ATAATTTGAGAGCATCTTATTATTAGAGAATCCACATAGTCTCAAGCCTCAAGAAAGGC-TTCCCTTCAAAGTTAATAAC-------AAGCTCAGATATAAAAAC-------------AATGACAAAAATGTT---------ATTTTACATAAGAGGTATAGAC--ACCCATGGCATATTTCTGGCCAGTCTAAGGCAGAATAGACATCT-ATCTGATTCTACC---CCTTTAGTCCAGG------CCTATGATATGATT----------------------AAGAAAA---ATG------CTATTCTAGAAGGCTTTTTAATCATAAAACTTACATAAAACAAAGG--AAAGGGCCCAAGGTTTCACTTTAATTATATTGTGACTGAAAACTAAAATAGCCATTATTGGCTATTGGGAGAAGATATAATTGAACTTATGCCTCAGAGAACCTAGAATGATCAAGAATAAAAATGAATTACTTCTTGGACTAGGAATTCCCAT--TTAGATGTCTAGGCACAGCCACATATttcaaccatctactaatctaataat-ctgttgagctacccag-ctagc-attcctccttttggctcatcaatgtatcat----atctgtcaaataccttgtgaagtgcagatacatttcaggtttatttccacattttcctTCAGGTGAATTAACTTT-----AATTCTAGAGCTATGGGAACCCTATTCaaaaaaaaaaaaaaaaacca
s HiC_scaffold_1 146541378 3092 + 233722169 ACAACCATAAAGATCTGAAAGTGGAGTGCTTACTCAAAATATTAAGAAAGGTTCGATTCAAGAGCTGTGAGAATGAGATTTTTATACATCTAATACTTTAGGAATACcaaattatttctaaatgaaaTGATACATGGATTGTCTACAAAATATCTACTGGCAACGAATGGGAATAATAGACCGTTTCAAGTTTCAAGttttttataataattaaaaatcctcctaaataaaa---atatatcgtTAAAAAACTGGAGGCTAAAGCTCTTTGGCAGTACAC------ACTATTATATAAAACTATGAAATTTACATAGCAGGTGTTGTTTGACTTAtgtttgcatgtgtgtttgtTAAGGAAGTGGTTTGTGCAAAACAGTGTTTTGCATGCTGAGGTTAACACAATAtagaaaatcaaccaaaaaagTCTGACTTTATAAATTTAGCATCTAGTAGTAATTAGCTAATGCATAGTGCATGCTGAATAAGAACTAAGAACTATTTGAGAGA-TTTATATTCATggttcacaagaaaaaaaaagaaattagcagttAAAGAAAATGCTCAGAAATTATCAGCTACCACCAGCCTTAAGCACTATGCAGGTCAATCTAACCTCACAGGCAGGAGGGACAC---TCCTAACCTCTGTTCACTTATGCCTCTCCCACTAGGCATGGAAGAGCTGCTCAGGACATCATCAGTACCACACGCAGTAGTCAGCATGTCCTGATCAAGCCTGTTCTCCGATTCCTAGAACCCTCATCATGGCCCAGTTTCATGGGAGCACCCAGAA-----ACTGCCTGCT-----CTGTGCTGGGTACTTCAAGGAGATTACTCACTTGAACTCTTAAAACACTACCACAAAA------------------------------------------------GAACATCACACAT------------------------------------TTcctaa-----aaatgagaa-----------------------------------------------------atgtata-----ATGCA--------GAGAAATTAACTTGT-----CTACAGTCACAAAGCCTCCAAAGGTTAAGCCCCTCCAGACTCAAAGTGCAGTGGATTCTCAAACTTCCTAGAAAACGA------------AACCGCCTTTAGGGCTTGTAAA-ACACAGACCCTCAGATCTCACTCTCAGGT---------------ACCTCAGTTGAGACCTGGGAATTTCCACTTTAGTAAGTCCCAAGAGAAGGGTGTAGTCACTGATCGTACTTCAGAACCATCGTTTCAGCACGTGCTTGATTTTACTTGACAGAAGAAGGCAGTTCCTTTACCATAAATGCATCCTTCAGATACTTCACAGTAGTTATTTCATTGTTAGCAATTTCTGTTAGTAATAACAGAATTAGTATTTCTGTTAGTAATAACAGAAATGACTCATATATCTAAAGATGCTGAATgactgaggcacagaggggcTTATCTCTCTTCGGAAACATGAGAGAGGTTTTCTTGGTCAGCATAGTAATGTAGCTGCTCTCCAAG--GGACCTGAGGAGACCCAAACTCA---ACCCTCTGAAATCTTCAATATGCAGCTCCCCAGGCCACTTTGGCCTCTCTGTTTCAG-CACCCAGGAGGAAGAGAAATATGGAAAAACAT-GAGCAGGACTTTCGTGCAGGTTAGACCTGGACAGGCCAGAAATACATTCTCTTAGTTAAATACTTGTCTGGC-ACCTGGGGCTGCATGAGGGGCTTACTGTGTGCTGGA-CCTTGCATCCAGGGAGATGAGCAAATGGTTTTGGGTGAGTGTCCTGAAGGCTTTGTCCCCACAACTTGGTGCATTTCCCTCTTTTCGCTAGCCTTCTTGCTTGCACTTAA----CCTAAATTCTTTGGGCAGCAAATACGTATCAGTATACACACGCCTGGCGCCATGTTGGATCCAAAGAATTTTTACAGTGGTAAATGTGATCCGATT-CCTGAAGGTTGCTATTTGTCTAGCATATCAtattaaacaaacaaattcaACCATTATGgggcaaagagaaaagaatataggggtagtggggtcccagggTGTAATGGGGTCCCAGGGTGGAGTAGTTGTGACAGTGTGTACAAAGAAGGCACCCCGAGAAAGAGCCTCTTATGGGGATGCTGAGGGAA---GGAAGGCAGATTA-CAGAGCAAAGACTAGACTGAGAGGTggcaaggaaaacaagaaaggagCTAGCAGGTGACATACAAAGCTCGAGACCAGTGAGGGACTAAGAAGGGGCCCGTGTGACTGTCCCGCAGGAGAA--GGGGGCTCTGCTTACAGCACTGTTGTGGAGGCAGGTGGAGGGCTGTGGGT--CACCAGAGTCCACTCATGCATGTGAGAAACGTCCACTCCATGCCCTCGCCCTTGAGGTGTGTGTTTAGTAAAGTGCTAGAAGTGCAGAAATGGAAAAGCGTACCTCTG-GATCCTGACTTCACAGAGATTATGGTTTAATGGGCAA-ACTTTTAACAAACAGCT-----CAAATTAAATGGCGACA--TTTATTTTAATGACCACATAAGGTTAGAATGTGGCCTTTTGAGAGCGTTTTA--ATGAGGAGAT-------------AACTTAGTGAAAAGCGTTCCCTGAGGAGTTGATCATTGATCGTCAGCTTAGACTTGAAGAATGTTTACGTTCAGAAGGACCAGGACATTCTTATCCCTGTTTCATGGGAGAGGAACAGAACAATCCCTGGAAT--------------TACGGCAGAGCAGCCATCTGACCAGGGCCTGTCTGCCCGTAAGTTCTGGGATCCCTCCATGGTGACACTCTGTAAAGGGGCCACGGAGGAGAAGAGAATCAATGTGTGCCCTACTCTAAAACACTTAAGGAGTGTAAAACTAacacaaatgaaaagcaaaaaggtCTTCGgctacattttaattctttcatgacTGAATACTAAAATAGTCAATGTTGGCTATTGAGAGAAGGTACATTTCAGGGCATGCTTCAGTGGACCCAGAAAGAGTAAGA--TGAAGTAAACTCATTCTGTGAGCAGAAATTCCCCTGAGAAGATGTTTAGATACAGTCCTA-----CAACCAGCTA--AGCCACAGAATGCTACTAAGCCACTGAATCCAGTGATTCATCCCTCTGATCTATCAACCTGTCGTAAGAATCCGGCTAATGCCTTGCTAGATGTAGGTACCGGTCAGGAGAGTCTTCACACTTTCCTTCCTGTGGACTTGCTTTCCTCGGCTTCCAGCACCATGGGAATCCCACGGAGCACAAGCAAAGGCAACCA

a score=40466
s chr3           159329519 3013 + 160039680 tcatgatgatggtagaggacatcaagaaggactttaataactgacttaaagaaatacaggagaacacagctaaacaagtagaagaccttaaagaggaaagaaaaaaaatcccttaaagaattgcaggaaaacatgagcaaacaggtgatggaattaaataaaaccatccaagacctaaaaagagaagttgacacaataaagaaaacccaaagtgagtcaacgctggagatagaaaacctaggaaa---gaaat----ctggaaccatagatg----------caagtgtcaccaacagaataCAAGAGATGGAAGAGAGAATTT---CAGGTACAGAAGATTCCATAAAGAACATCAGCACAACAATCAAAGAAAATACAAAACACAAAAAAATCCTAACTCAAAACATCCAGGAAATCCAGGACACAGTGAGAAGACCAAACCTACGGATAATAGGAGTGGA--TGAGAATGAAGATTTTCAACTTAAAGGGC-CAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTA-----AAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCT----------------------------ATGACAA---AACCAAATTCACACATT----------ATCTTTGA----ACGAATCCAGCCCT-TCAAAGGATAATAGCAGAAAAAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCA----CAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAA----GAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAA--AACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGAT---ACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAG-----ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGT-TAATGATCT--AAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAG----ACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCA--GTTCTTCACA-----------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAA--------------------ACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAA---CCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAA----CACATGATCATCTCATTAGATGCGGAAAAAGC-----ATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCAT-ACCTAAACAAGATAAAAG-CAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCaa
s HiC_scaffold_1  65294987 2927 + 233722169 TTGTAATAATAAAAGagaacacaatgaaaga----aataagaTGCTCAGTGAGCTCACAGAAaacacaattaaaca-gaaaatggaCTCAATGA----------------TCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaATA-ACCAGTTCAGAAAAAATTTAGAGTCCAAGAAAAAGTACC-------AAATAAAATCCAGGAGatcaaaaattacactgaaagcaTAGGCAGGAGAAATGACAAATGTGAGCA-CAGAGTACT-GAAATAGAAGATGGAGCTGATGTTGGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatggag----ccaacagctgctagat------------gaaaTGCGG-----------AAGACTAAATTAAC---TGGAAGGAGTAAAAATCAGAACGAAG--------TACAAATGGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCA----CATGTGAGTATTGAAGgtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactg-----aagtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACCCAAAAAATTCTCAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaaaaaaaaaaaaaaaaaaaaacctataaaaata-----aatacacc-------aaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgc-------aatgatagCAATAAAT--------CAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTGA------------GACCCAGCAGTATGCTGTATATCAGAAAGTCATTT--------AATCCAAAAAACATtctagactaaaaatcaaatagaaattgtTCTATGCAATGG---GAACCCCTAAACAAGCAGAATTTCTTATCCTATTTCTGAA-AAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGA-------TTACCACAtattaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGACTTAGAAGATCTGATA------TATACAATTATATTGAAGAACTTCAATACCACACTGACACAAACATATCAACTAGAT------AACAAGTTAACAAAGAAATACCACAGTTAAACTGA---ACATTCT--AACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaacaatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagc--aaaacagactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaaggtaagac-----------CTAAATC-----TTAGAAATTAGGAATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATC--TTGAATGCCAGCAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAAC--TAATAAGATATAAAGACCCTGGAATAATACAGTCACAGCCAATGAATT-----AAACCATAAATAAGAACATCTATGAACAAATATAAACCCAGAC----TACGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAAAGAAGGAGTACCCt--caaactcattcttggaagcttGTATTATTAGTATTGTACTACAA-TACTATTTGTACTGTATTACAAAACCAATCAAGAA------GCAACTCAAaaaggccaatctctttaatggagacagaagaaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGT----Acatcaatcaataa--------atataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAGCAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAA

a score=43105
s chr3           159329539 2992 + 160039680 atcaagaaggactttaataactgacttaaagaaatacaggagaacacagctaaaca--------------------agtagaagaccttaaagaggaaagaaaaaaaatcccttaaagaat-----tgcaggaaaacatgagcaaacaggtgatggaattaaataaaaccatccaagacctaaaaagagaagttgacacaataaagaaaacccaaagtgagtcaa-cgctggagatagaaaacctaggaaagaaatctggaaccataga----------------------------------------tgcaagtgtcaccaacagaataCAAGAGATGGAAGAGAGAATTTCAGGTACAGAAGA------TTCCATAAA-GAACATCAGCACAACAAT------CAAAGAAAATACAAAACACAAAAAAATCCTAACTCAAAACATCCAGGAAATCCAGGACACAGTGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCT-----AAAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTAT----ACAGACACTAAGAGAACACAAA---------------------TGCCAGCCCAGGCT-----ACTATACCCAGCCAA-ACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAAACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGA------AAAAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAA------------------GTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAG------AACAGAATGCCAACTCTGA--CAATAAAAATAAAAGGAAGCAAAAAT---------TACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAAGAAAC--------AAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAG-----ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGG----AAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTC---------------ACTAGAGGGCACAGGGACAGCATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGC-AAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCa
s HiC_scaffold_1  71797277 2947 + 233722169 ACCAGGAAAAGCCTGAA--ActcaatgaatgaaataaacaaaattagaGTCAAACACTGGGACTTTCTGAAATTATagtaacagaagtgaaaaacaaagTGGACAAagctacaaagaaaataatttttcaggtaaA-------AAATAAGTGAT--ACTTAAA-------GTCAAAGATACTAGATTAGATGCAGATA----AAAGAATATATGAcatgagaaaaattttagaaataaaaaatgtaggaaagaaata-gaatccatgaaacaaatccaaatggaaattcaagagattaaaacctTTCATTTAAAGTGTCTGCAACAGATTGTATGAAAGGAAAGGATGGAGttcagatactgaagacagaatttccgttagtgatcatgaaaagaaagatgtctTACAACTAGCATg-atatcatgaaaaa----taaatccaa-cagctataaaatgaaacaaagaacaaGAACATGATAT-------TGATTGGGGTCAGTGAGAAAGca------caaatgcaagaa-----aaaaataaacacagaaataatgGAAGAGAAATTTCTAAGAATTGATAAAAAAATTTGG----CATTAAAATAAACCAAGGATATAGAACCCCAaagagaaaagaccaaaataaaactacatc--aagACATAGTATTCAAGATTGCAGAAgttcagcacaagaaaagaatattaaaagttgctaaagaaaggaaatagatcacctataaaggaaagcccttCAGAATCATGGTCAAATTCTCACCACAAAcactcaaatcaagaagagcttg-cagGACAATATctcaactaaaaacaaaacaaaacaaacaaacaaacaaacaaaaaacctttcaacccagattgatgtattaTGAAAAACCaatattatttttcacaattaatgatgaaa-taagatataacaaagaacaactgaagaaattcataacc-----acaaaaccaaccctattGTAGGTCATGAAAGACATATTagagagagacataaaaatgATCCCAA-----TTCTAAGAACAGCAATAGATAGAAACCACCTGGCAGTGTAATCCATTAAGCAAGGTAAAAGCAGGCAaccaaaagtagaaaaataatatgacagatatgaagcaatatatatatatatatatatatatatatatatatatatatgtta-taaccTTTAACTTAAGTgatttcaattcaccaatcaaaagaaacagagcagCCGAACATACcaagaagcaagatctaacaatatgcttTATAGAAGAAACATAT-TAAACACAAAagattga----------aagtcaaagcatGCAAATCAATCTTCCATGTAAT-------AGGAACCCATTAAAATGCAgaggtagatattctgtttgcagacaatatgaacctCAAACTGAGAgcgatcaaaagagataaagtt---cactacatacttgttagagaaaaa---cttcaagaggaag-----------------------------acatggTTAATCAAATA---------------AGTAA---------------------TTAGCACAattgtaacaaaataccttaaaACCCTAccgtcacaaagagatagat-agatcaattagacaaaaactTAGCAAAGAAGTATCAGTACTGAACAAaatctgtaaacaaatggacttagtagatgttttcagAGAATTCCA-CCAATGTCATCAGAATACACACCCATCCCAGGTTctcatgggatattctctaaaatagaccatatactagcccacagaacatgctgaaataaatgcaaagaaattgaaattactTCATGATTATTATCTCTACatactgcaatgaaattgaaacttaatagca--------aaagaaaactcaacaatcacatagaaattaaattatactACCCAAAACaactaatgggtcacagatgaaattaaggaagaaagtaaacaatatctataactaaatgagaatgcagatacaacataccagaattgaTGGGACAAAATGAAGGCAATCCTAAGAGAAAAACTTATAGTGGTGAATTCACACATCAGGAATACAGAATGAGTACAGATCAAGAACTTAACATTTCACTTCAAGCTTCTAGTAAAAGAAAACGAGgacaaacccaaagcccataCAAGGGAGAAGATTTTGAAGCTCAGAACAGAAACTAACACAGTGGATTaaactaaggaaacaatacaaagaatgaatgaattgaCAAGttcattatttgaaaaaatta--aagaaaggtaAACCTTTATccaacattttcaaaaaaaaaaaaaaaagaaagaaaaaagaaaaaaccctcaaGTTAatgcattgaaaaataaaaatggtgaaatcatgatatattctgtggaaattcaaaagttcattaa---tattttgaaaatcttttgcTCCCATAGTGTGGAAA---TAGATAAATAC--ACAGATTCTTGATATGTATGAATTATTGAa-ttgaataaagaagatataaaaattttgaataacacaaaatCAGGGCATGAgattgaaaaggtaattaaaattttaccaacaaagaaaaacccaggtctcAAGGGAGTCACTGtggaattctgtaagaaatttggAGGAGATTAaatgccagtactcctcaaact-------------------cctaACTCATTAGTGGAGTCAAGTatttccctgataccaaaaccagagaaagactctaCA--------------------AACCTTTCTAATGAACATtggtgcaaaaattctcagtaagatactaacaaatagaatgcagcaaatgatTAAGaatatatacca---tgaccaagtagactTCATCATAGATATGCAGGGATGTCTttacatacacaaatcagtaaatgtaataaaccatatcaacagagccaaagacaaaaataacatgatcatcttaatagacgCAGAAA----GTT--------TTTGATGTCCATTTAtggtaaaaaccctacagaaatgcAGAATAGATAGTCATTATCTCAATCTAATGAAAtacatctatggcaaaccaa-agCCAGCATCA----TACTGGGAAAAAGCTGAAAGT-TTCGTTCcaaaatcaggaatgagacaaggatgtccactatcaccactccttttca

a score=9303
s chr3           159329584 1183 + 160039680 acagctaaacaagtagaagacc--ttaaagaggaaagaaaaaaa-------atcc----cttaaagaattgcaggaaaacatgagcaaacaggtgatggaattaaataaa------------accatcca----agacctaaaaag-----agaagttgacacaataaagaaaacccaaagtga---gtcaacgctggagatagaaaacctaggaaaga----aatctggaaccataga---------------tgcaagtgtcaccaacagaataCAAGAGATGGAAGAGAGAATTTCAGGTACAGAAGAT----TCCATAAAGAACATCAGCACAACAATCAAAGAAAATACAAAACACAAAAAAATCCTAACTCAAAACAT-----CCAGGAAATCCAGGACACAGTGAGAAGACCAA------ACCTACGGATAATAGGAGTGGATGAGAATG----AAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCT----AAAGAATGTCATGCCCATGAACATACA------AGAAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAA--TAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTG--GTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCT-ATGAC----AAAACC-----AAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGA------AAAAAAAAACAATACAAGGATGG---AAAACACGCCCTAGAAAAAGCA--AGAAAG-------TAATCCCTCAACAAACGAAAAAGAAGA-CAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAA-AAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAAT--TTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCA-ACAA-ATGGTCTGAAGAAACAAGCTGGAGTAGCCAT
s HiC_scaffold_1 129057229 1216 + 233722169 ACagctaaattattaaaaaattggtaaaagaggagacagaaaaacagatcaaTCCAATGCTTGACAAGCTCAAACATGATTTCACTAAACAGACAATGGAGTTAAGTAAGCAGAGGATTTTGACTTTACAGATGACACATAAGAAGCTAGCAGAGCTAAACAAAGTAATGCAAAGCATGAATGACCAGTTTACCAAAGAAATTGGAGTTTATGAAAAGGTACCAAACggaaatcaaggaaacaacaaATTCTGTTGAAAGTGTAGGCAGCAGAAGTGATCAGTATGAGGACAGTGTGTCAGAAAGAGAAGATAGTGCTGATATAGGTGACCAT----ATActcaaagatactttaaaa-acaacaagagc---acATAGAAAATGGACACTACAGAttctagatgatgcaaagaagactaatctgAGACTAACTGgtattagtgaaaaatcagaaggctGTATAAATGGCATTTTACAAAACCCGG-------TTTACAGAAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAAT----------TAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATA--------GAAAAAAACCCTGAAGTCCAACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGC--AAACCCTAAAGGCCAGgcgagcttggagtaaagtatt-tgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaa-taaagtattttcatGACAGAGAGAACCTTAAGAAATTCATA----ACCT-----CAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaagaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTTTC-----AGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta----aaatt--aAGACtcaaaaacagtattccatgcaacatgaACCTAA-AAATAAGTAGGAGTTGAcat

a score=52141
s chr3           159329610 2922 + 160039680 agaggaaag------aaaaaaaatcccttaaagaattgcaggaaaacatgagcaaacaggtgatggaattaaataaaaccatccaagacctaaaaagagaagt-tgacacaataaagaaaacccaaagtgagtcaacgctggaga----tagaaaacctagga----------------aagaaatctggaa----ccatagatgcaagtgtcaccaacagaataCAAGAGATGGAAGAGAGAATTTCAGGTACAGAAGATTCCATAAAGAACATCAGCACAACAATCAAAGAAAAT----ACAAAACACAAAAAAATCCTAACTCAAAACATCCAGGAAATCCAGGACACA-----------GTGAGAAGACC-------------------AAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACA-AAATTATAGAAGAAAATTTCCCAAACCT----AAAGAATGTCATGCCCATGAACATACAAG-----AAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAA-----ACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGA------AAAAAAAAACAATA-------------CAAGGATGGAAAACACGCCCTAGAAAAAGCAAG--AAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAA---GAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACA--CTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATA-CCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATC-ACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAAT----AAAGAAATAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTA--AAATTAACCAAGTGGAAACAAGAAGAC-TATATATAGAATTAACAAAATGAGGAGCTGG--------TTCTTT-------GGGAA------------------------------------------------------------------------------------AATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAA------ATAGAAAC------AGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATG-CAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCaa
s HiC_scaffold_1 137514806 3022 + 233722169 AGAggaaatcagagtagaaataatctctcac----ttagaaaaaagaaatgacaaaca--ttatgaaat--agTGAGTGTATCTAAGGAAGACAtagaggagcataagaaaataatggaaactttgaatgaa-caacatcaaaaagaattagaatgcataaaacatttaaaaatatattaaggaatttaaaaattcctttgaaagctagcaaaaccattaggat----gaagctgaagatagactctcagacctggAAGA---------------------AGCAATGGAAGCTAATGATCACAAAA-GCAAAGACCtcctaa----aaatagcaaggaa--tcaggaaacaattcaacagctgtaagatgattcaattttctttatataagaaaatataagactGAAAGGAgtgaataaaaaagcaaaaat-cagcacaaatgacatgaacagactatttacagaaataatagcagaaaaatttctaagcaagggaaaagaatat----------aacatacaaataaatgagcatataaaactccaactaGCCACAACCAAATTAAAtatacacccagatatataataattaagatagcAAAAATTCAGCTCAAgaacagaataccaaaagctatcagagaaaagaaaccgaTCACCTATGAAGGCTATTCCATCAGAATAATGA-AAATTTGTCAATACAAACCATCACGTCAAGGATAACatagagtaaagtatttcaagttctgaaagaaaggAACTTCCAAGCCAGAATGatgaaccctgcaaaactatctttcaaaattgatggacaaataagatacttccatgataaagaacaattgaatAAACACATAACT----AATAAATC-AgcactacaaagagtactaaaagatatTCCAGATAAAGATGATGATGACCATAATTCCAAGAATAACAG--------CAGAAACACCAAGCAAGAGCAAGCCCTTAA------ACAAAGAGAACA---ACAAGAGAAGA-TACCA-------CAACAAAGACAAGT--------CAAtacctatcagttataaccatcaatgtaaatggcctcaattcattaatcaaaggaaacagactggaagaataaATTAAGAGACGAAATCCAACAATGTggtgtatgcaagaaacacattttactcaaaagtaaattcatagactgaaagtcaaaggatagagagcaatactctat---gtgacataaaccagaaaaaagcaagggtagctattccatctacaaacaatgtgaacttcaaaccgagaatgatcaaaagaggtaaagaatgtcactacatacttgttaggggaaagcTTCCAGAAAAAGAGGTACCAATGATAGATATATATGTACCAATTATGGAAGCACCCAACT--ATCGAAGACAggtattaatagacatgaaaaattaaataagcaatgaTGCAATTATGACAGGGAACCTTAGCACCTGATtgtcagaaagagagagatcaaCTAGCCAAAACA-----TCAGTaaaga-ataacagaactgaatcaaacttgtgaacaaatcaTTGTAGTAAACTTTTTAAGcg-gttctacccaacaacatcagaatacagattttttttcaggtGCACATGTGTCACTCTCTAATATAGACCATATA-CTGACCTATGGAAtgtgcttaagtaaatggaaaggaattgaaattatcccacacatattATCTGACTACAGTGcatttaaattggaaattaacaacaaaatacataacaaaaagtacataaacacatgaaaactaaATAACATTCTcctaaacaatcaatgggtcagagaagaaattttaaaagatattatacAATATCTACAATTGAATGAAAGTGCAAATACAACTGACCAGAATCTGTAGGACATATTGAAAGCAGTTGTCAGATGGAAATACATAGTAGTGAATTCTCCCATCAGGAAAATTGGACGAACAAAAATTAACAACATAATGCTgcacttcaaacttctagaa-aaagaagagcaagtcaagcctaaagaa------gggagaaaata-------taAGGGAGAACAAATGAATGcaatgagactaagaaaatggATACAAGGaattaaagaatcaaagagttggggctttttttcttttggtaccgggaattgaactcatgaccttgggtttgccaagcaggtgcttaagccactgagctaaatccccagccctaaacatTAGTGCTTTCAAGgaataaataacattgataaactcttagccttatcaaaaagagg----aaagaaaacactcaaaccCACACAATAAGTAATGTAAAGGATGAAATccctacagatcctgtggaaattcagaagataat----tcctattttgaaaatctatactcaTATcacatggaaaacacagaagaaacagacagattcctggaaacatatgaattactaaaactagatcaagaacatataaaaatcttgaataaccttgtatcagctaatgaaattgaaaacctaattaaaaacttaacaaccAAGAAAAGTACAGGACCTGAccaattcacagctgaattctacaagaaatctagagaagatttaacaccaacacacctcaaactctttattgaaattacaagggaagtaattcttcctaaCTTATTccttgaggcaagtattaccctaattccaaatccagagaaagacccaaccaagaaagagGACTACAGGCTCATCTCCCTAAGGAATATAGAagccaaaatcctcaataaaatactagaaaacagaatagaacaaatcATCTATAACATTGTGCAcaataaccaagtgggattcagtccaggaatgcaggattggttcaacatatgcaaatcaataaacataatacaacatattaacaaaaccaaca--aaaaatcacatgatcatctcaatatatgcagaaaaaactgttgataaaattcaatattaattcatgataaaaaccctacagaaaatcaaaataaatgatctttgtctcaaactgataaaagtcatttatgacaaaacaactaccagtatcatactaaatggacaagcACTGGAAGCTTTGGCTCTAATATCacgaacaagacaaggatgtccactatcaccactcctattcaa

a score=43200
s chr3           159329642 2899 + 160039680 caggaaaacatgagcaaacaggtgatggaattaaataaaaccatccaag---acctaaaaagagaagttgacacaataaagaaaacccaaagtgagtcaacgctggagatagaaaacctaggaaagaaatctggaaccatagatgcaagtgtcaccaacagaataCAAGAGATGGAAGAGAGAATT-----------TCAGGTACAGAAGATTCCATAAAGAACATCAGCACAACAATCAAAGAAAATACAAAACACAAAAAAATCCTAACTCAAAACATCCAGGAAATCCAGGACACAGTGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATG-AAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTACA-----AATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAAACCAAATTCACACATTATCTTTGA--ACGAATCCAGCCCTTCAAAGGATAATAGCAGAAA----AAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTG---ACAATA-----AAAATAAAAGGA------------AGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT--------------------CAGGGA-----------------------------------------------------------------AAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCA-ACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACA-------------------------------------------------------------------------------------------------------AAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTG--------ATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAA------GAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCA-CTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC-AACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAA-------------------------------------------------------------------------TGAT-----------------------------------------------------------------CTAAACAGTCCTATATCCCCTAAAGAAATAGAAGA---AGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAA--------AGAAGATCTAATCCCAGTTCTTCACA------------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAAT-------------------------------------------------------------------------------------------------ACTAAATAAAATTCT---------TGCTAACCAAATCCAAGAACACATTAAAACA-----ATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGA----TAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCaaaa-attcctg
s HiC_scaffold_1 195236718 3277 + 233722169 CAGGAGACACTGACAAAAAAgatagatgagcttaagaaaatcatggaagctcagcatagaaaagaaatggaatccataaatcAGATGCA--GGCAGACATCCAGGAgaacaaaaactccactgaacatATCTGAGGCagattaagccaatgtgag-gacaggatgtcagatactgaagacaggcttgcagttagcaaccaggaaaaaaagatttctcaaa-------------actagcaagggac----------catgagaaatctaTCCAGCAGCTGCTACGTAAGACAAAGAAGAGT----------AACTTACAATTGATTGGAATCAATGAGCAAGCAGGAGATatgac---aaatgacatttaaaaacttcacagacatcatgacagaaaa-------------aagaatttga----catacagataagcgaggcatataaaactccattAGCAATaatc-------aaaaaaatctacagccaggcatatcacagtcaagattccagaaattcgacacaagaataaaatcctaaaagctgttagagaaaagaaacaaatcacctataaaggaaagcccagcaGAATCACAGCTGATTTCTCAGTACAAACTCTCAAGGCAAGGAGAGCtgggagtgaagtactccaagttctaaaggaaaacagttttcaacccatattgatgtatcccataaaactctt--tcaaaattgatggataaataagatacttgcatgacaaag--aacatctgaggaaatttatgaccactaaACTAGCAatccaaaatgctctgaaggacattctagaaagagatcaTGAGGACTACA-----GCTCTATGAACTCTAACAGAATGAATCCACAA-----GGGAAGGAAAACAAttagaagggaagagaaaaaatgagggagacaatagcaggaaaataaaatgacaaggataagtcaataaacatcaatt------ataaccatcaatgttaatggtctcattTCACCAGTCAAAACACACAGACTGGCAGAgaggatcaagaagcaagacccaacaatatgctgcatacaagaaacacatttaattcaaaaacaaatttagccagggatttagctcagcagcataagtgactgccttgcaagtgtgaggtcgtgagttcaatccccagtaccaaaaacaaattcatagactgaaagtcaaaggacagaaaataatactgcatgcaacaggatcctagaaaaaagcaggact--ctgttctgtttgcaaacaaagtgaatttcaagccaagactgattaagagagacaaagaagattaCTACATCCTTGCAAAAGG---AATAATCTAAGAAGAggcaacaatcataaatatatacacaacaaacactagtgcacccaactatataaaacaatcacTAACAGacgtgaaaaatcaaataagccctaatacagttgcattgggagacctcaatac-ccgcTGTCAGAAAAAgacagagcaact-----agacaaaaaatcaataatggaatagtagaactaaatcaaacttttgaacaaatggacttagaagGTGTTTATAGAATGTTCCACCTCACAACATCAGCCCACacattctggggctgggaatttagctcagcggcataagcgcctgcctgccaagcatgaggtcatgagtttgatctcaataccaaaaaaaaaaaaaaaaggacatacaTTCTt----actgcacatgggacattctccaaaacagaccatgtactggcccatagaacatgcttaagtaaatg--aaaggactgaaattatcccatgcatactatcagaccacagtgcaatgaaactggcgaaaggaaccacaagaacttcataaacac------actGGCAT-------GTTACTGAacaac--------cagtgagtcacagat---gaaagtaaagaagaaactgGAAACTAGAACAGTTGAATGACAATGACAATGCACCATACCAGAACTTATGAGGCACGATGAAAGCAGGCCTAAAAGAGAGATTCATAGTAATAAATATCcattcagaaaaac-agagcaagcacatatgaATAACTTcatggtgaacctcaaacttctagaaaaagaagaacaggcTAAGCTAAAAGCTTGGAGGagtg------agaaaattataaatatcagggcagaaattaacacactggagactaaaaaa--atgcaaagaatcaatgaatc--agagttggttctttgaaagattagataaaattgacaaacctttagccaacctcatccaaaaaggaaagaaaaaac--tcaaatccacacaattaggaatgaaaggtGTAAAAGCACCACAGACCCTTCCGAAATCCAGATCAtctaca---cctactttgaaaatttgtattctaataagat--gaaaatgcagaagaaatggacaggttcctagaaacatg--agttaccaaagctgaatcaagaacatataaaattcCTAGAGGCCAGAgacataactcagtggcacaaggtctgcctggcaagtgtgaggtcatgagttcaatcctgataccaagaaaagaaggaggaggaggaggagaaggaggaggaggaagaggaagaagagataaaaatcctaaataaaccaataccaatcaatgaaattgaagatgtaataattttttaaaaatcaacaaagaaaatcccagg--ctgatggattcactgctgaattctacaagaaatttaactACTACTAACTAATCTAACgctactacttctcaaactctttaatgaaattgaaagggaagcagtatttctaaattcattcctggaagcaagcataaGCCTaataccaaaagcagagaaggactcaaccaagaaagagaattacaggtcaatttccctaatgaacactgatgcaaaattCCCCAGtaagggggccagggatttagctcagtggcataagtgctgtactggcaagttcaaggtcctgagttcgatccctggtaccaaaaaagcaaaacaaaacaaaaatcctcagtaagatactgacaaa----aagactgcagcaaatcatgaagattaTGCACTATGATCAAGtgaaattcatcccagggattcagggatggttcaacacacataaatccataaatgtaatatactacatTAACAGagacaaggacaaaaaccatatgatcatctcaatagatgcagaaaaagctcttgaCAAAGTCCAGGAcccatttatgattttttaaaaacctacaaaaagTTGGAATAGGTTGTCTTtatgtcaatctgataaaagtcatctacaacaaaccaatagccaacatcataccaaatggacaaaaactgaaatattccTCTCTGAAATCAAGGACAAGATAAGGATGtgcactgtcaccactcttattcaacatagtcctg

a score=5130
s chr3           159329713 294 + 160039680 aataaagaaaacccaaagtgagtcaacgctggagatagaaaacctaggaaag-aaatctggaacc--atagatgcaagtgtcaccaacagaataCAA------GAGATGGAAGAGAGAATTTCAGGTACAGAAGATTCCATAAAGAACATCAGCACAACAATCAAAGAAAATACAAAACACAAAAAAATCCTAACTCAAAACATCCAGGAAATCCAGGACACAGTGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAA
s HiC_scaffold_1 139027740 271 + 233722169 aacaaaaagaacccaACAGGAATC----TTGGAAATGAAAAGCTCAGTAAGTTAAATTAAGAACTCAATGGAATGACTAGTCA--AACAGAAGATGGAATTCTGAGCTTGAAGACAAAGTTG-----ATGAATTATCATACAAGGaacataa----------taaagaaaa---agatgtcAGAGGAAT--------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAA

a score=7849
s chr3           159329887 485 + 160039680 AAAAATCCTAACTCAAAA----CATCCAGGAAATCCAGGACACAGTGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAAA
s HiC_scaffold_1  87509082 460 + 233722169 AAAAATGATAACAGGAAAGCTATATCCAGGAGCTGCTAGATGGCTCACAAAAACCCCACACCAGATTTATaggcataaaagaaaaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAAGATAGTCATCAACTC-----------TCCTGCAAAA---TTAACTTTCAAAACTGGCTGAA--AAGACTTTTCATGgcaaaa

a score=23429
s chr3           159329970 1632 + 160039680 AAGATTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAATGTCATGCCCATGAAC---ATACAAGAA--GCCTACAGAACTACAAATAGACTGG--ACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAA-----AACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGAAAAAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAA--AAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAA---AATAAAAGGAAGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAA----TTTTCCA-ACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACA---TTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAA-------CGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAA--TAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAG---AGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGA
s HiC_scaffold_1 102291791 1530 + 233722169 AAGAAATACAGGATAATGGcatagaaaacataaacagtaaaataatagtggagaatt-----------aaaaaaatcttgcAAATAAATGATATACAGGGACtggatttaaaatgcaaaataagcaTATAGCCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAAAAAATTA---------CTACATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTACTGCTAAAT-----CAGTTTTGCAAAACTTACTG--------------------AGTTTTGCAAAACTTACTCAGGAGAGCATGAAAAGGAGTAAATCTT------------ATTAAAAGAGTCAATAAATCAGAAT-------CAAACAATCAATGAAATAACAGGGAGCAATACATACCATTCC----------------AACTGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGT----GAGTTCAACACTTCATTCTCACAAACAGGC------TAtc-------taaaaaatcagcaaagaaacaattgTGCTAA--ACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGTAAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACGG--------------TTAGTAAGAG---AAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGGTTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGA

a score=28497
s chr3           159329982 2395 + 160039680 TTAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTA----AAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAA----ACCAA--ATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGAAAAAAAA---AACAAT-ACAAGGATGGAAA-------ACACGCCCTAGAAAAA---------GCAA----GAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAA-TAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAAG-----AAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTA-----------------------------------------------------------------------------------------------------TCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACA--CAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAA-CAAAAGAAAGA---AAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACT--------CAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAG-ACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGA----CTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACA------------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAAC--AAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCT----CATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGA----TAAAAGTCTTG
s HiC_scaffold_1 116834066 2338 + 233722169 TTCAAAGGTCATAAAACATATTCACT-------TATAAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAG----TACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaagaa-aaatacaaaaagttgtTACATAAAAAGAGCAG------CAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCAC---CCCCCAAAAGTCAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAGAAGAAATATATGACCACTAAAC--ATACAAT------AGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaat---taaacaaaaggaaaaaaaa-----caaaagaattgg-------cATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTATAATAACTTTCAATATCAAT--ACTGAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagatta----atAGTAAAAGGACAAAAAATGATACTCTATGAAA----CTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGAACAA--CAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCACA----------------------------GAACAAAAACT------------GCTGTACATATAAGG---------------AAAAACATATCAATA----------------------------CAATTACAGTGAGAAA-TTCAATAACCTACTCTCAAAACTAG------CAggtcaacaagacaaaaaattagcaaaactTATCAGTTAAAC-----AATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTGAA-----GTTATAAATTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaataagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaagatgaacCAAACATGAATATAATTAAT---------ACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATC-ACTGGAATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAAC-----AGGCAATAGATTACGACAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGAT-GCTAAACTATCAAAGAActtaatgaaaaggaaaactacagCCAACCACCTTCATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataAT-ATCA-------TGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagt---------caatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAG----Ggacaaaaaatcttaaaaaatctaatatccattcatgatttttaaaaaccctg

a score=20604
s chr3           159329983 2189 + 160039680 TAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTAC-AAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGT--AAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAG-ATGGAGAAAGCAAAATATTCTATGACAAAACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGAAAAAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATTA--------CTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAA-ACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAA----TAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGA----CACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAAC-----GGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTG--GAAACTGAG------CAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGACTTTTT-------AGAGTTTAATGA-AAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGT-TAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC--TAATCCCAGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAAC------TTCCAACCAATTTCCCTTCTGAATATAGATG-CAAAATACTAAATAAAATTCTTGCTAA
s HiC_scaffold_1  89594254 1992 + 233722169 TAAAGCATAAGCATCTATC--CATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCT-----CATTTAA-AGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaagaa-aaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgtt---------gaGCAAAGAAACTCATGAC-----AAGTAAGCCAGCattccagaaaatatttaaatatcacaaaGACAATG--AGTATAAGA--------CCATGTAAAGTATAAatttaatt---------ggaaaaataaagacaaaaatgagaacAAGGAATTAAATGTTA----GAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATA-CAATAAATGTAAAAGGCATTAATCT-CCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAA--GATCTG--GAAACAAGCAGGGTTGACTATACTTATATCTGAAAcgtagaattaa-----aacaaaaatcttt---aagtGACAAAGAATGCCACTACACATT-GTAAAAGGTACAACTCACcaaggaaaaa---caattttaacCATAGGAAC-ACAAATGCCTGCACATGttatttcataaaacaatttCACTTGA--AAAG----ACAAACACAT----CCCCAAAAAT--ATAGTAGGGGACTTCAACAC--TATTTTTATAagtaggtcaactaga---------caaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT--------------------------------------TTTAAA-----------GTTCTATTGCATCACAatggaatgaaacta---------gaaattattaggaa---aaaaattacatgaatatGCTGAAATTGAGTTAAAATGATACATTTGTAAATAACCAACAGACAACTCAAGtaatcagaagaaaaa----ttttaacgtcaaaaattaaatgacaaatcAAAC----ACATGTCATAATCTGAAGTAGATA----------TTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAA----AAGCAAGAGTGGTTCCCAAAAAATAACCTAATGGT---actaaag-----agaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaa-atagaaaggatccgttaatc--agagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAGagac-----------tcaaataaataaaattagagattGAAA---------------AACTCCT---GAAATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAGA-AATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAA--GTaagatatataaaattaaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACC-TATCTTTTGAGAATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaatttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaa

a score=50802
s chr3           159329995 2520 + 160039680 AAATATCTTCAACAAAATTATAGAAGAAAATTTCCCAAACCTAAAGAATGTCATGCCCATGAACATACAAGAAGCCTACAGAACTACAAATAGACTGGACCAGA----------AAAGAAATTCCTCCTGACAC--ATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATAT-TCTATGACAAA----ACC-----AAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGAAA---AAAAAAACAATAC-AAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAAGTAATCCCTC-------AACAAACGAAAAAGAAGACAGCCAC-AAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAAT-TACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAAT-AAAGAAATAAA--GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTA---GATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACA------------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAA-TACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTC--TTGGAATGATCA----GGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTT
s HiC_scaffold_1 135385634 2353 + 233722169 aaaactattcactgaagtaatggcagaaaacttatcaaggataaaaaatat--ttaacatatagataagtgaggcatgcaCAACTCCAT-TAGCCATGACCaaaccccctccaaaaaaaaatctatcctaAAGCCTACAATAgccaacattccagaaattcagtccaagaacagaatattaaaagttgttaatgaagagaaacaaatcatttataaaggaaagcctatcacaATTACAGCACATGTCTCAATACAAACCCTTAAATCAAGGAGATcttagaatgaagtatttcaagccctaa-agaaAACAGtgtccaacccagattaatgtaccctgcaaaactatctttcaaaatgtatgaagaaa-taagatatgtccatgacaaagaacacctgaggaaattcgtGAAC---------ACAAAACCAAcattccaaaatgttttgaaggacattcaaGAAAGAGATACTAAGGACTACAA-----TTCCATTAATCCCAACAGAATGAGTCCACCAGGCACAGCAAATAATTATGGAGAgaggaattaaaaacagaa---caaacaggaaaataacatgacaaggataaatcagtGTATATCAGTAATtagccatcaatgtaaatggtctcaattcaccaaccaAAAGAAGCAAACTGGAAGAAtgagtcaagaaacaagattcaacaatatgtgGCAttccagaaacacatttaactcaaaaagaaatacatagactgaaaatcaaaggatagaaaacatacTCCATGCAACTGGAATCTGGAAACAAGCTGAAGTAGCGATTTCATTTGCAGATAAAGTAGGTATCAAGGTAATAATCATCAAGTGAGACAAAGAAGGGTATTATATTCTTGTCATA----------------------------------------------------------TAGTCAAATAAACTAGACAAA-----------------------------------ACattaaca---------------------------------------------------aagaaatacca--------------gaaatcaaccaaactttttaa-caaatggacttagtagatatctataaagtgttccaccccaaaacatcagaatatacatttttctcagc---------tacaCTGTCCAAAATGGACCACACACTAGCTCATAGAATATGCCTAAGTAATggcaaacaaat-gaaattatcccatgcatattatcagaccatagtgtaattaaattagaaatcaatggtaAAAGGAACCatgaaaacttcataaacacttggaaattaaataacacccttctgaacaaccagtgaatcacagatgaaattaaagaaaaaaacagactttttaaaattaaaggataatgccagtacaacctACTGGAACtaatgggatacaatgaaagcaatcttacAAGGGAAATGTATAGAGATAGATTTCCACACTA-GAAACCAGAAGGAACGCAAATAACC----TAATATTGTaattcaagcttctagaa--aaagcaCAGCAAGTCAAGTACAAAGCTCACATGAGGGAAGAAACTATGAAGACTGGAGTAGAAgataatgcaattgaaactaagaaaacaacacaaagaatcaatgag-tcaagagttggttctttgaaagattaaataaaattggaaaacccttagccaacctcatcaaaaaggaaag--aaaagactcaaattcatgaaattagCAATGGAAAGGGCAATATCACAATGGATCTTGTGTAAATT---AAGATCattaatatctactttgaaa------acttaatgaggc---agaaaacagaaaatatggaaacattcctagatacatatgaattaccaaagctgaatcaagatgatacaaagagtCTAATTAATCCAttttcagtcaatgaaattgatgatataattaa---------aacagagaaaaacccAGATCCTGAATGAtgcactgctgaattctacaagaaatttagaga---tctaatgccactactcctTATACTCTTTAGTGAAGTTGAAAAgcaagcaatactcccaaattcattgctgggagcaagcattactctgatactgaaaccagagaaggacccaaacaaaaaagagaactgcaagcCAATTTctctagtgaacatagatgcaaaaatcttcaacaagatactggcaaacaaaatgcagcaaatcatcaaggaaatTATACAGCATAACCAAGTAGAATTCACTCCAGGAATTCCAaaatggttcaacacatgcaaatcaatagatgtaatacatcatattaacggAGCCAAAGATAGAAACCACATGGTTATCTCAATAGATACATACAAGGCATTTGACAAGGCTCAACACCCATTCTTGATAAAAAACCATAAGGAAAATTATACTGGAAtcgatggtctttatctcaatatgataaaatccatctatgacaaaccaacagctaacatcatactaaatagtcaaaaagtgaaaattttcactctaaaatctgaAGCAAGGTAAG--TGGTCACTT

a score=28755
s chr3           159330016 2480 + 160039680 AGAAGAAAATTTCCCAAACCTAAAGAATGTCATGCCCATGAACATACAA--GAAGCCTACAGAACTACAAATAGACTGGACCAGAAAAGAAATTCCTCCTGACACATAATAACCAGAACAACAAATACACTAAATAAAGAGGAAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACT--AAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAAA-----CCAAATTCACACATTATCTTTGAACGAA---TCCAGCCCTTCAAAGGATAATAGCAGAAAAAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCA----AGAAAGTAATCCCTCA---ACAAACGAAAAAGAAGAC---AGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATTACTTTTC-TTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT---CAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATT-TTCCAACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAAC-----------GGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAG--GACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTT-----CTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGAC-----TTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAG---AACAAAAGAAAGAAAATTCAC--CCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAAC---AAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCA-TTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGAC
s HiC_scaffold_1 171883953 2143 + 233722169 aaaaaaaaactttccaaatatggaGAAAG--AGTCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctAGAA-GTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGccaaactagcactccaaaatTTCTCAAGGATATCTTAGACACAAGGAAGCTAGCAATGTCAAATGGTCCAACCAAATGACTACAGCATACAGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaataggaaaataa----------------agaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagaga---aaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatcagataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc----------------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaaCAT---GAAATTTTCCCCAAATAGAAAACAT-ACTCATCTCATAAAGGCATACTTAAGTATTCATAAGGAgtcaaaattattccatgcatac-aTCAGGTCATAGTGCA-TAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACACAAGAACTT-TGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaa--acagtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaa--acacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaa-----------------caataaacaaa--caagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAAT-GAATAGGTTCT---CAGATAACAG-----------AAATTAT-----------------------------------------------------------------------CAAAAATGAAccaaggccaga--gatttagctcagcagcccagcagg--------------------------------------------------------------------tgtgaagtcatgagt---------------tcacaGAGCG-------------------------------------------------------------------------------------CagtaaatcattaaaaagatcatacatcaaaACCAACAAGGGTTTCTCCC--------AGGGATGATTCAACAgac--aaattaataaatgcaatGTGTCACATAGACAGAAGCAAA--------------AATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAAATGCAACA---ATTCATGGTAAAagtc-tgaagaaaataggtatagaatgATCTTTTCTGAAGCTGGTAAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgg-gaaaaactgaaagctttccctctaaagcCAGGAAC

a score=29427
s chr3           159330177 2353 + 160039680 AGAAAGGTCAAGTAAC---ATATAAAGGCAGGCCTATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAAACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGAAAAAAAAAACAATACAAG------GATGGAAAACACGCCCTAGAAAAAGCAAGAAA---------------GTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAA-------AAATTAC-------TTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCC---AACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCT---GATCTT-----TAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGA-------------------CTATAT---------------------------------ATAGAATTA--------------------------ACAAAATGAG--------------GAGCTG-----------GTTCTTTGGGAAAATCAACAAGA--TAGATGAACCCTTAGTCAGACTCACTAGAGGGCAC----AGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACC----AAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTC-------------ACAAAAT-AGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGC-AAAATACTAAATAAAATTCTTGCTAACCAAATCCA---------------------------------------------------------AGAACACA--------------------------------------------------TTAAAACAATCATCCAACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGA-TAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTC
s HiC_scaffold_1  66016515 2831 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatataaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT----------------GGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAGCTAAAAACACAGAACAACTAGTGAAATCAGTGAATaaacatcaacaaaga-aacataaggaaaagaaaaacaaaggatacaccaacataaaaagaaagcaatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagataatCA--------------AAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAA--AACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACACA--------AGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAAT--AAACACTAACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattc-----aacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagtt-cgAGGAAAGTTAACAATATACTCCTaaataaccaatgggtcata--------aaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAA--AGAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaa-aaacaacaataaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAAT----TAACACAGTAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCA--AAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatc-----acctctTC

a score=25573
s chr3           159330208 1704 + 160039680 TATCAGAATTACACCAGACTTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATG----CCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAAACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAAT-------------AGCAGAAAAAA--AAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAA--------AGGAAGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTT--TCCAACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATA-------GTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGA---ACATTT-TATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAA--AAGAAAGAAAATT-CACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGG-----------AAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAAT
s HiC_scaffold_1 227404805 1613 + 233722169 tatcagaatttcagcagacttctcaatacaaatctTAAAGGCCAGAAGAGCATGTGAAG----TATTTCAGCACTAA----ACACAAATAACGTCCAACCTCAGCTAACCTACCCA-CAAAGCTTTCTTTCAGAATAGGTGAAGAAATAAGAGTATTTCACAAAAAAGACCAGCTCA---AGAGACTT---ATGACTCCAGCATTCCAAAAAGCACTCACCAATTTCCTAGGCAGAAGACGTGAAACCAAAACAGGTCAAAACCTCGTGACACAAAAACACCAAGTAAGG------TCAACAGGtaagcaacaaaa-aataacaagaaaagaaaaataagcaagtcAGTAACAGAGAAGGCAATAGAGCAAACAACCAACACTTCTCAGCGGGCCTCTCAATGTTAATGACCTCAATTCCCCATTTAAAAGATGAGGATTCATAGACGGGATCAGAAAACAGAATCCAACTGTCTGCAATGTGCAAGAAGTTCACCTAATGCAAACAGatgttcacagactgaaaattaaaggGT--------ACTTCATGCACCAA--GACCTG--GAAACAAA-TGGGGTAGCAACTTTAATCCCAGAC-ATGTAAACTTCAAGCTAAAGCTGACTAAAAGAGACAAAGGAGGCCACTACACCCTGCTCCAGGGAAGGATGTATCAGGAAGAAACACTGG---TAAGTATTTCTTCACTGAGTATCAGGGCACCTACCTTCATAAAA-------CAGCACTGCTGAA--TACAAAAGACTCCAAACATGTTAACACGCCCAGAGTGGGGATCTTAGCACCCCACTTTCACAAA-------GTCAGGTC----AACTAAACAATAATCACAGAAACATTAGAATTAAACCACACCCTCAAACATACCGGTGTACTTGATATCTACAGATAGATACCTACATCCCAACACAGCACAGTACACGTTCTTTTCCGCAGCACACGGTACTTTTTGCAAGATAGATCACACATTAGTCCACAAAGcctgcttaagtaaatataaaggttTTGAAATTATCCTGTGTGTACTCTCAGACCACCATGCAATGAAAATAG-----AGTTgcagaagaaatagcagaaaaggTAGAAGCATCTGGAAAACTAACAACACACCTATACACAAC-CAGTGATTATAGAAAAAGTCAAGAAATTTAAACT--------------------------------CACCAAAAACTCTGGGACCCCAAGAAAGCAGACCCGAGAGAAAAGTTCATTGCAAACAATGCCTCCATCAGGAAAATGGAGCAAGC-------TCCAG-TGAATAACCCCATGAGGAATTCTAAAATACTTGAGAAACACAATTCCGGCCAAAACAAATTAA-GGAGGGAAACTAT-aacattagagcagaaatcaatgacatggaggctaaaaacaaacaaaaataatgcacA---GATCGGCAAATCAAAgcactggttctttgaaagaataaacaaaacagataggCCC----GAGGACTTACCACATAGTGCAG-----------------------CTAGAAATGCAAAAGATGAAGTCACAACAGACACTGTCAAAATCCagaatatagtaa----ctactttaaaaaacTCAATTCCAACAAATtggcaaattttaaagaaataga----ttcctagatgcatataaattaccaaagctaactcaagaagacacaaatatgCTAGACAACCCAGTGACAAGCAATGAAAt

a score=31715
s chr3           159330227 2246 + 160039680 TTATCACCAGAGACCATGAAAGCCAGAAGAGCCTGGTCAGATGTTATACAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAGCAAAATATTCTATGACAAA---------ACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATA-----------ATAGCAGAAAAAAAAAACAAT--ACAAGGATGGAAAACACGCCCTAGAAA-------AAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATT--------ACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAA-AACAATTTTCCAACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTT----CCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACC--TTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCA-CAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAA-----GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAA-CACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCA--CCCAAGA-------GGAGTAGATGGCAGGAAATAATCAAACT---CAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAG---AATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTC--CTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAAT----------CCCAGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCA---AAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATG---------ATAAAAGTCTTGGAATGATCAGGAATTC--AAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAA-ACTGGAA
s HiC_scaffold_1 228955060 2200 + 233722169 ttattttcaaaaattctgaCCAATACTAAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACA-ATCATC--------AAACTAGGACTACAAAACATATTCAATCCTACACAGCAAGAGGGAAAAACTATGAAAAAGGATAGA--------CTCAATAATTAATCTAAATGGGAGAGTTGTttc---acaagagagaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaattaaaatgataTCTATGTAATAAGTG---TGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATACTCC-------TCAA---ATAGGTCAGTC-----AGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT-ACCCATAT---TGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCT--CACAGGGAAATTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAG--TAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataaaattacaacACAAAGGTCAATGAAAAAAA----------GTTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaa---tttttcttta-aaatttagagaatctgaaagaaatggataaattccta--caTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAGATGATAATAGGCCAT---GAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAGtgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGA-----------CACAAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTT-----CCAAA---AGCAatacaataaatcaataa------atgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAA

a score=7306
s chr3           159330331 692 + 160039680 AATTACCATAG-----ATGGAGAAAGCAAAATATTCTATGACAAAACCAAATTCACACATTATCTTTGAACGAATCCAGCCCTTCAAAGGATAATAGCAGAAAAAAAAAACAATACAAGGATGGAAAACACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACGAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTGACAATAAAAATAAAAGGAAGCAAAAATTACTTTTCTTAATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACA-----------AACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCA-ACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAG-----ACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAA
s HiC_scaffold_1 133135300 645 + 233722169 aGCTACCATagcaaacatacacaaaagtataaaCACAACTATAAAAGCAGATATACAAATGAGGACAAAAGTAATCAAACCTT-------ATCAGTACAGAAAGCCACCAAATTGCAAAGATAAATAACA-----taggaagaaatgggaaaaaaattcaaaacagacgAAAATTAGCAAAAGTACAAGAGTATCTCTTCAGCT------------ATAAA----------------------TAATAACCTTGAATATACACAGATTAAATCT-TCAATGAAAGTATTTCGATAagctgaataaataaaaataactaggtAAAACAAGACCCGGTGATATCCTATCTACAGGAA-CCCACTTCACTGGTAAAGCCAGACA--------GAGGTGAAGGATGAATAAAGATAACTTATGCAAATGG-----AAAAGTGAGCAGGAATGTCTACACTTATATTACATGAAATAGAC--CAAGTCAAAAGCTGGGACAAAAGGGGAGACAGAGGAGATCAATACGTAATGGTTAAGTG---ATTGATTCAAAGGGATGTAGCAACTGTAAATACATATGAACTTAGTGTTGGGACATCTAATTTTATGAAGCAAACTTTACTTCATGTAAAGGGAGAGATAAACGCTGATAAAATAATAATGGAGAATGTTAACGCCCCATTTTCATCAATGGCCAAATCa---tctagaaaaaaa

a score=5400
s chr3           159330570 254 + 160039680 AATATCTCTTAATATCAATGTACTCAATTTGCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGAAAAACAATTTTCCAACAAATGGTCTGAAGA--AACAAGCTGGAGTAGCCA-TTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGG
s HiC_scaffold_1 185583358 236 + 233722169 AACAACTTTGAAGGTAAACATACTAAATGTCTCAATTAAAAGATACAGTCCTGCTGAATAGATACAAAAACAAGACTCAACAATATGCTGCCTTTAAGAAACTCACTTCACCAGTAAA--------------TAAAGTGAAAGACTGGAAAAAGATAGTACATGAAA----ATGAAGACCAAAGAGCAGGAGTATCTATTTCTTGTGTGAGGCAATATAGACTTAAGAT---GAActgtaaaaatagacaaaaaaag

a score=24495
s chr3           159330636 1514 + 160039680 CAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCAT-----CTCAGGGAAAAAGACAGACACTACCTCAGAG-------TGAAAGGCTGAAAAACAATTTTCC--AACAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCAACTTCCAACCCAAAGTTATCAA-AAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGA-----CAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATA----------------TTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAG-ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCAC--CCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAAT-GAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAG---ACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTC--------ACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAA
s HiC_scaffold_1  55820632 1483 + 233722169 CAAATAACATCCAATGGAGTATTGcgtataaaaaacacatttaatccaaaagaGAAACTCATGGGCTAAATCAAAGGATGAAATTAAAGGATGAAAAGTACTACTCCTTGCCTCATGAACATAGAAAGCAACATGG-----CTATGCTATCATCACATAAAGTGG---------CCAAGATTGTCCACAAAAGGTAATGGAGGTCACTATGTATAGTTTAAGGAACCAATCTAACAGGAAGAGATGACAGTTATTACCTTACATATACCACAAAACAGCACAGCCAACTTCCTAAAACAAGTACTACTGGatataaaagatgaaat--------aaacatttacaGTA-------TCAATATCTATCTCTTAAGAATAGAACAAGTAGACAAAGTCaagacaacaacaataaaa----aattcagtg---ttgaaccaaaccttcaaataaatggacttgatgCATGTCTACAAAGTATTCCACTC---AACAATGGAACAtattttcttctcagcagtacatggaactttctccaaaatagaacacataccAACCAGTAGAGCAAATAtaagtaaatgtaaatataagTAAATGTAAGAGAATCAAAATTATATCATGCAtcttatcagatcataatgcagtgaaactagaaatcaatgacaa-------aacagaaataaagcagaTATGTGAAAACTAAACAGTACACTGTTAGATAACAGTTCAGAGAAGAtggtaataaagaaaaaatgcagtTTCTAGAACTAAGTGACAATGCCAGCAGAGCATAACAGAACTTAGAGGATCTAATGAAAGCATTCCTAGAGTAGAATTTTATAGCTATGAATGCCCACATAGCAAAAGCAAAGCAGGCTCA----ACTAACCTAATGATACAACTGAAGCTCCT---ACAAAAGAACG---GTCCATAGccaaagctagtacaaggaaggaaattataaacatcag------aatcagtgaaatcgagaccaaaacaaacaaaccaaaactcaCAAAATAGaggagttagttctttgaaaga---aacaaaatagagaaaacatgaaCCAATCAAacctaa----aaaaggaaag-atccAACTCcaagcaattagaaataaaaaaggtgaaatcacaatgaacattgcaaaaat-gaaagaattatccACAGTTACTTCAAAAACTTTTGTACCAATCAGTCagagaactcagaagaaatgtaGA--TTCCTTGATACATACAAATTACCAGAACTGaaccaagaatatttttaaatgctgaacAATCCAGTAGCAGGTAAAGATATTAAAACACTAATTAAAAACCTACTACCAATTAGAAA-AGTCTAGGTTCAGAAGACTTTACTGCATGATTCTATAAAAACTTCAGAGAAAATCTAACACCAATACCCCTGAGTCAAATGAAATTGATAGTCAAGGAATACTCCATGAATCATTCTTGGAGGCTACCATTAACCTTAGA--------AGAAAAGAATCTAGCTAAAATGGAGAACTGTAGACTGAGGTCTTTAATGAATCAAGATGCAAAA

a score=18434
s chr3           159330753 1608 + 160039680 GCTGGAGTAGCCATTCTAATATCGA-ATAAA------ATCAACTTCCAACCC----AAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAATAGCAACTCTGAATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAAGACACTTTAGTAAAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAG--ATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACC--TAGGTCAAGGAAGGAATAAAGAAATAAAG--ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCA--AAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-GAAGATCTAATCCCAGTTCTTCACA------------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGC-AAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGG--TTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATT
s HiC_scaffold_1 213142376 1377 + 233722169 GCTTGAATGCCCACCCTGAGATCTATATACATGGGTAATCACTTTTCCCCTCTCGTAATGTGAGCAGAAGAGCCCAAGAAGGTGACTACATTTTTGT-GAGGGAACAATTTCacaagaagagataataattataaaaacatgCGTACCAAACAACAGCACACCTGACATCATAAAA------CTAATACTACTGGACAAAAACATG-----------ATTAGAA--TAAGGATCTCAGcagcccactgtcacaaat--acagATGAACTATACTAAAATCAACAAGTAAATAT---CACAGT-----TTACCGAAACCTTTGAAGAACTGGACTT----GAtatttatagagtgttccaccc---aacaacagaacatacattctttttagcagcacatggaacatgtTACAAAATAAACCACACGCTtaccaaaacaaaatgtttacttaaataaatgagaattgAAATTATAATGTGCATATCATTAAATCATAgggcaatgaaactagaaattaatggcaaaagaaaacatagaaattatgcaaatacgTGGATATTAAACAGTATACTCTTGAATAAAATTAATGGGTTACACagtgaataaaggaaaaaaattaattcctAGAACTAAACATTAATGctaatacaacataccagaagtTATAGAACACAGTGACAGCATTCCTAAGAGGGAAGGTTACAGCTGTGAATGCCCATGTCAAAAATACagaatgagtcaaaataaatag-----cAATGCACCTTAAActcct-------aaggaaaaaaat------------aatag-tgtCAAAGACAAATGATACT--------GACATACCC------------------------------TAACAAAA-------------------------CAATAATGTA---CCACCTTTTTTC-------Ctaga------------------------aaagaaatctaaaattgtA--GTATAAATAGTAA--------GGAAAAAT----------------TCCT----------------------AAAACTGAAG--------------CAAAAAGTT----------------------------------------ATAAGCTACCTAAATAATCCAGTAACAGGCAataaaattgaagcagtaa-taaaaaatcCCTAACAATTAAGAAAACCCCAGATCCGATGGATTTATTGTTGAATTCTAAAAGACCCTTAGGCAAAGATCTGACACCAATACTCCTCAGGTTCTTTAGTGAACTGGAAAGTGGAGAAATACTCCCAAAGGCATTCCTGGAAACTAGTATTACcctaattccaaaaccagacaatgcTCCAATcacaaaaaagaactataggacaatctctttaatgaatatagatgcaaaaatcttcaacaaggcactggcaaacagaatgcaggaaatcaaCAAAAAGATCACACATTGTGATCAACTAGTCTTTATACCAAGGATATAAGAATGGCActgcatgaaaaaaaaacaataaatgtaacacatcacataaacagaat----gCCTAAGATCACATAATCATTTAAATAGAGACAGAAAATTCCTTTCACAAAATCTAATATTCATT

a score=15288
s chr3           159330876 872 + 160039680 AATATCTATGCTCCAAATGCAAGGTCAGCCAAATTCATTAAA--GACACTTTAGTA-----AAGCTCAACGCACACATTGCACCTCACACATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACT-AACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCA--------------------------------------------------------CCTCAC--------GGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATA-TTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGG-GTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGAT
s HiC_scaffold_1 218653386 905 + 233722169 aacgtatatgcaccaaacaccagCACACAAAACTTCCTAAAACAAACACTACAatacataaaagatcag-ataaacatca------acacaatTATAGT-GGAAATCTTAATACTATTATGATAtcag-aaacagatcaact-----agacaaaaattcaacaaaggaATATCAGAGCTGAACTGAACCTTTGAA-CAAAT--ACAcaatagatatctacagaatgTTCTGTCTAAAACtaagagaatacacattcttctcaccaATATATGGAAGTTTTAGACAGAATGTTCTGTCTAAAACtaagagaatacacattcttctcaccaGTATATGGAAGTTTCTCCAAAATGGACTACATGCTATCCCATAAAgtatacttaagtaaatgcaaaaaaaatcaaaattatgctATGGATATTATCAGATAacaatgcaatgaaactaga----aaaaagaaaagaaatcacagaaattatgcagACATATAGTTATTAATCAATACTCTTTTTACTAATCAATGGgttagagaagaaatta-----tacaaa-ttcctagaaataaaCAGTGATGGCAGCACAACATTCCAGAACTTATAAGACACAATAAAGGTAGTTCTAAGATGGAAGTTAACAGGTATGTTtacccacatcagaaaaaccaaataagcccAAATAAACAATTTACTTAAGTACCTCAAGGTCACAGAATAATGAGAACAAGCCAAATCCAAAGCTAATacatggaaagaaataataaagatcagagcaaaaaattaatgaaattgagacaaaaa----atgcaaagaatcaattgATCAGAGagattgttctttgaaagaataaacaaaatagataagcccttagccaatcttacctAAA---AAAAGGAATGCA-------CAAATGAattaacaatgagagaaaaaaatcaccaatagAT

a score=19307
s chr3           159330958 1134 + 160039680 CATTAATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGC------------------TAACATTCACGTGGAAACTGAGCA-ACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTC--ACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAG-----------------------CATCCTAATTAACAAAATCAGAAATG-AAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATA-----GAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGT--TCTTC----------ACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAA
s HiC_scaffold_1  66787240 1105 + 233722169 caattataacaggaaacctaaataacccactgtcacaaatagatcaaccagA--------GAAAATATCCAATGAAGAGATATCAGAGTTGCAAGAAACTTtgaaccaa-taaacttaataGAT---TAT------TTCCACCCAGCAGCAACagaataca--ttcttttcagcaataCACAAGACTTTCTCTGAAATATATCAAATACTAG----CCAAGAAggcttaaataaacacaaaagaatcaaaattatcccacacatgttatcagatcatagtgcagtGAAGCTAGAAATCAACGGCAAAAGAAACCAtggaaattatgcaaacacatgcaAAGTAAAATACACATGCAAAGTAAAAATACACTC----AAATAATCAGTGAGTCATGGAAGGAAT-------TGGACAGTTCTTAGAATC------AAATGACATTACAATGTACAAGAACCTATGAGACACAGCAGAAGCACTTATAAAAGGTAGGTTCATAGCTATCAATGCCCTCATCAGAAAA--AGAATGAACCCAAATAAATAAGCTAACAATGCACCTCAAGgttcta---------aaaaaaaatccaaatccaaatatagtacaaggaagaaaaatataaagatcagaaaagatattaatgaaatggagactcaagaaacaaaacaaaaaataacaaaatgaagatTTAGTTCAttgaaacattaaatgaaatagacAAATCC--GGTCTTCCccgaaaaaagacagaaagaaagaagagaaaagaaaggatgcAAATCAATCCAGTTA--GAAGttagaaatgtaaaaatgcaAAACCACAATGAATTCTGCTAAAATTCAAAG-ATTATTAGTACTTACTCTGAGAACCTGTACTCCCGTAAAATAGAGAATTC--------------AATGATTAGAGACATATAAActa-caaagctgaatcaaga--aagtaaagatttttaataatCCATAATT-----AAGAAACAAGTTTGAAGA----GTTTAAAAACTACTAACCAAGTAAAACAcaggtcttgatggatttactcccaaattctacaaaaattttaaggaaaatctaTTTCCAATACTCTTCAAGCTCcgtaataaaattgaaaaagaaagtacT--------GCCATTCTTGGAAGCTAGCATTAACCCGATTTCAAAACCTGAGAA

a score=9237
s chr3           159330963 697 + 160039680 ATAGTTGGAGACTTCAACACACCACTTTCATCAATGGACAGATCAGATCGTAGAAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACA---------AACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAAT----AAAGAAATAAA--GACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTG--CCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCA--AGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCT------TTGGGAAAATCAACAAGATAGA
s HiC_scaffold_1  96150036 658 + 233722169 atagtgGGGGACTTTATTATTCCACTTTTACAATTAG---------------GAACCAAAGATAAAGCAAGAA-------------ATATCAGCGTTGAAACATGCAATTGAAATGGATTTAACAGACCTCTACAGAGTGTTTTATCTGACAGGAACAGAATGCACATTTTTTTCAACAGCATTCAGGATGCTTTCCAACATAGACCATAT-CTTAGGCTTTAAgcatacttaaataaatacaaaagaattaaaag-----cctgAAAATTATTGGATCACAGTGAAATTAAGCTGGAAAACAACACCAACAGAAGCCACAGAAACGATATAAACACATAAAGATTAAATAGTGTGTTAC---ATAAACAATAGATCACAGAAGaattcaggaaagaaataaaacaaagtccAAAAATCAAATGACAATGGAAGCACAGCATATCAAAACTTGTGGG-----ATGAAAATGGT--------------TTACATCTGTAAATGaacatacagaaagaa--tagaGGGATCCCA----AATAACTTAAGGATGACTCATGAACTCCTAGA--AAGTTACAAAAAATCCAAATATTAAACcattagaaggaaagaaattataacaattggagtgaaaattattaaaactgaGACAAGCAAACAATATGAGGgactaatgaatcaaagagtggaCTCTGAAAAAGTGGGAAGAGAACCTGGATGGA

a score=22563
s chr3           159331016 1001 + 160039680 AAACAAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCA------AGGAAGGAATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAG--GGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCA
s HiC_scaffold_1 117889013  991 + 233722169 aaaaaaattttaaaaaaagaaatatcagaactgaaccaaaccagTGAATGAATAGAgtta---gatgtttacag--tgttccatccaacagcatcagaatacacaatct---cagctgcacatggaacattctctaaaatagaccatattccaTCCCACAGagtatgcttaagtaaatgcaaagaaatagaaattaccccatgcatactacctgaccatagtgcactgaaattggaaattaatagca--agaaactgcaaaaactctataaatacatggaaattgaattaCACCCTCCctaacaaccaatgggtcacatattaagttaaaaaaagaaattaaacaatatctacagttaaatgaaaatgcagagacAGCATACCAGAACCTGTAGGTTATAATGAAACAAGACCTAACAGGGAAATTTAAAGCAGTGAAGTCTCACATAAGGAAAGCAGAAAGAGCACAGATAAGCAACCTAATGTTTCACCTggaacttctagaaaaagatgagcaaatcaagcccatggtcatacaatggaaaaaaagtataaagatgagagcagaaattaatacaatggaGACTATAGAAACA-ATAGAGAAGTAATGAATtttagagttggttctttgaaagaataaataaaattgataaactc--agccaacattatcaaaaatagcagaaagaaaagactcaaatttatgcaCTGAGGAATGagaagggtgaaatcactacagagtaTGTGGAATTTCAG---ATCATCCATACCTACCTCAAAAATCTTTATTcttataggatggaaaacacagaagaaatgaacagattcatAGATTcatg--aattaccaaaggtgaatcaagaagatataaaaattctgaataacacaatatcagttaataaaattgaatgcataattaaaaatttaccaacaaacaaaagcccaggtccttATGAATACACTACTGAATTccacaaaaaatttagagaagatttaatgccaatactcca

a score=44123
s chr3           159331020 2287 + 160039680 AAAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTTTGAAACAAACGGATCTAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAAT----AAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCA--CCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC-AACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGC-AAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACT-------------TTCTACCTACCTCTTCaaaaatt-------------------------------------cctgaataga------------------------------------------acagcaatg--------------------------------------------------------gcttgtgctgtaag---------------------------------------------------------------------------------------------------------------------------------------------------------attgagaactgacaagtgggacctcatgaaactgcaaagcttctgcaaggcaaaagacaccattattaga-caaaaaggccaccaacagattgggaaagtatctttacctatcctaaatcagataggggactaatatccaaaataaataaagaactcaagggggtggaccccagaaaatcaaataaccccatt-aaaaatggggctcagaactaaacaaagatttctcacctgagtaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagagaaatgcaaatcagaacaaccctgagattccatctcacaccagtcagaatagctaagatcaaaaattcaggtgacagcagatgctggctaggatgtggagaaagaggaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaataagtctggcggttcctcagaaaattggacatagtactacTggag---------gatcccccattacctttcctgggcatatatccagaaga--------tgtcccaac-cagtaagaaggacacatgccccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggataaaaaaatgtggtacatttacacaatggagtactactcagctattaaaaggaatgaatttataaaattcctaggcaaatggttggatctggagggca
s HiC_scaffold_1 120353930 2514 + 233722169 aaataatcaacaatgaaatattagaactgaatcaaacttttgaacaaatggacttagtaggtgtCTACAGAGTGTCCCACCCCACATcacaa---tacatattcttctcgACTACACACAGAACgctctccaaaatagacca-ataCTTGCTCATAAA-CATACTTAGGTAAATACAATGA-ATTGAGGTTGTCCCATATATACTATTAGATCACagtacaatgaaattagaaataaatggcaaaagaaaccacaacaacttcataaacacatggaaattaaatagcaccctcctgagCAACAAATAGCTGATAGgtgaaatttaagaagaaattatgCATTTCCAAA---TACTGTCAAT------ACAATATACCAGAATTTACAGGACATAATGAAAGAAGTCCTATAAGGGAAATTTACAGTGGTGAGTACTCACATCAGGAACACAGAGTGaactcaaataaacaatctaatg--ttaactcaagcttctaga--aaaagactGAA---TCAAGCCTAAACcttgtatgagggaggaaattataaagatcaaagcagataTTAATggaatagagattaagaaa--atacaaaggatcaat-gaatcagaAATT--ttccttgaaagattaaataaaatctacaaacccttagccaacctcaacaaag-----aaagaaaagactcaaattcacgcaattagaaatcagaaaagtgaaatcacaatagatcc-----AAATCCAA---ATCATCAATATCCACttcaagaacctgtattctaataagattgAAAACTCAAGAATAAATGGACAGCTTCCTAAATA-ctataaattaccaaaactaaatcaagaagacataaaaattcaaaacaaaccaatgtcagtcaataaaattgaagatataattaaaaacctaccaacaa----------aggcCCTGATGGATTAAGTAATGaagtctacaagaaattcagaaaaactcTAATACcactcttcaatgaatttgaaagggaagcaatgctcccaaattcattcccaGAAGCAAGCATTTCCCTAGTATCAAAACCAGGGAAGGATGCAAccacaaaagagaactacagcccaatctccctaatgaacatagatgcaaaaatcccaaataagatactagcaaacggAATGCAGCAAATCTTAAAAAAGactatataccatgaccaaacaggattcatcccagggatgcagggatggctcaacctacataaatcaataaatgtaatacactatattaacagagccaaggacaaaagtcctatgaccatctcaatagatac-cAAAAAGTTTTTGACACAGTGCAGcatgcattcatgataaaaaccctacagaaaattggaatagatggtctgtatCTCAATCTGA-ATAAACCACCTATGACAAACCTGCAGCCAATAtcaaactaaatggacaaaacctgaatgctttcactctaaaatcagatacaagagaaggatgtctgctatcaccactcttattcaatatagttctagaaacattagctgGAGAAAGACataagagaaagacataaaaggaatatggatagaagttatcattatttgcagatcacatgaCACTCTTCATAGAGGAcaacaaaaactccaccaaaagacttttagttttggggctggggatttagctcagtggcataagcgcctgtcttgcaagtgtgtggtcatgagttcgatccctggtactaataaaaaattaaaattaaaattaaaagacttttagttttaataaccaaattcagtagtgtagttgggtacaaagtcaacattcaaaaactcaatagccttcctgtgtataaataacaaactcattgagaaatTAT-----GGACCTCATCTCACTAAAAaacttctgcatagcaaaagaaatcactaacagagtgaaaagataacccagaaagtggaaaaaaatcttagccagttTCTCTTCAGAAAAGGGACTAACACCTAGAACATAC-AATAGTTAAAAATATCAGATCCCTCCCAATATAAAAACCCCGTTCAAAAATAGGTATCTGAAATAAGTATAAACTTCT--ccaaaata----caaattgcaaataaatatatg----aatgttCAACTTCAATAATCTTCa-agggatgcaaattaaaacaacaatgagattccatctcactctagaaagaatggctattatcagtAAACCAACCAATAAGAAATCCTTGGAGGGGTGTGAAggga-aggaacccttctccactgttagtaataatgcagactggtgtaacc-ctgtggaaatcagggtgAACACTACTTAAAAACGAGG----------ACTGCAGGTTTCATTTGATCCAGTtgttccccttctgagtatcttcccaaaagaattaaaagcatcacaccacagcattA--TACACACACCCT----TATTTATAGtggcataatttgtaatagct--aacttgGGAACAGCTCAAA-GCCCATCAACCTATAAAAGggtaaatattttttatgaattt--------gaGTACTACTCTGC-ACAAAGGAGGATAAA--cgaggcatttctaggtaaatggatgcatgttGAGACCA

a score=9990
s chr3           159331074 574 + 160039680 TAACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACC----ATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAATAAAG--------AAATAAAG-ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGA---ACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAAT
s HiC_scaffold_1  96522418 566 + 233722169 TGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCC---CATAAAGTATGTTTAAaca----caaaaatactgaaataatacAGTGCATATTAATGGGTCATactaaaatgaaatt--------agaaagccacaaaaaagaaactgctcagatCCA--TGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaatacaa---atctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac-tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=32349
s chr3           159331079 1464 + 160039680 GATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTGTCCAAAATTGACCATATAACTGATCACAAAACAGGACTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGACCATCATGGACTAGGGCTGATCTTTAATAACATCATAAATAATGGAAAGCTAACATTCACGTGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGAAT-AAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAA----CAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAACCAAGTGGAAAC-AAGAAGACTATA---TATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGA--TCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT------CTAATCCC----AGTTCTTCACAAAA--TAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACT-AAATAAAATTCTTGCTAACCAAATCCAAGAACACATTA---AAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCa--aaaattcctgaa
s HiC_scaffold_1  52903767 1410 + 233722169 GATATATACGGAGTATTTTACCCTTTTACAACAGAGTATACATCCTTTTCAGGAGTATAtggtactttttccaaaatagatcacatactagtcCACAAACCAgg-ttaagtaaatataaaagaattaaaattatcctatgcataccATTAGACCATTGtgcaatgaaaacagaaatcaatgacagaagaaaattttaaaaaggcaaaaactcctggaaaattaacaatgtactcctaaacaaccagtggtccacagaagaaatcaaagaagaaagaaatttctggAAGTCAATGACAGTGACTGTATAACTCAGTGAAACCTCTGGGACACTACAAAACcaattctaagaggaaaattcTTAGATTTCAATCAC------------------AGAGCACAC----CCAAGTAAATAACCTTATGGGCAAATTTATGATACTCAAGAGACAAGAAACCAACCCCACAcca--aaattaaggagaaaaattaaagagagtGG--AAACTGATAAAATtgagactgaaaaaaataaacagtaaaaaatcaagaaattgaagagctggttctttgaaagaatgaataaaatacataagCCATTAGCCAGACTCACCAGGAGGAAGACTTACA---------TTAatga--ttagaaatgaaaaaggtaaaatcacaacagataatttcaaaatccagaagatagtaa----ctactttgaaaatttatGCTCcaacaaattaacaaattttgaagaactggacagatttctagacacataCATACTACTAAAACTAACCCAAGAAGTCATAAAAATGCTT-----ATtccaataacaagcaatgaaattgacaCAGTAATAAAAAATCTACCAACTAAGGAAAACCTAGAACTTGataa-ttcactgctgaattctacaaaatcaTTAAGGATGTTACACCACTAATactctcaaactcttcaaagaaatttaaagggGATGGAGTGCTCCCAGATTCATTTATGGAAACCAGTGTCCCTGTAATCTCAAAACCAGATAAAGACTAGTTAAA-----AGAAATGTATGCCCATCTCCTTAGTGAATGTAGATGCAAAACTCTTCaacaagatattagcaaatagaat------acaCATTACCAAAAAGACCATACATCATAAC---GTAgttttcatcccagagatgcaggtatggttcaacatacataaatcagtatatgtaatacatcatataaaCAGGAGCCAAGACAAAAACCATGTGATCATATCAGTAGACACTGCAAAGGCTCTCAACAAAAGCCAACACCCCTTTATTTTGAAAAC-------------GGTATAGGAAGACCATACCTGAATATGAAAAAAGCTAT-TGTGACAAATCAGTAGC------CATACTAAATgtggaaaaactaaaaacattccc-CTAATGtagggaacaagacaaggatgtccactgtttcctcttctgttcaacaaagtacttgaa

a score=17055
s chr3           159331292 1230 + 160039680 TGGAAACTGAGCAACACTCTTCTCAATGATACCTAGGTCAAGGAAGGA---ATAAAGAAATAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTA-AAATTAACCAAGTGGAAACAAGAAGACTA-TATATAGAATTAACAAAA-TGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATA----GATGAACCCTTAGTCAGACTCACTAGAG-----------GGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAA-AACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAA----GAAGTCAT----TAATAGACTCCCAACCAAAA--ACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAA-----ATAGAAACAGAAGGTA------CTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCAC-TTTCTACCT
s HiC_scaffold_1  38267598 1195 + 233722169 TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAGAATGCAGGAGAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaat-taaaggaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAG-Gagctagaggaaaaaaaaaa--------tcaaacataagagagggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggttttt---aaaaacaaataaatattaaaaagacccTTTATTTA---TTATTAGAGTTTggattaaggaaaaaagagaaatgatatagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGGTGAATTATTTGG-CACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATA-------ATGAAACAGGACTTTGGAACCATAATTTAATAATCTC---ACTGAAAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaatatttcttgaaatcaaagataagaaaatacttgcaaattcACT-TACGAGGCTAGCATGACCCTGATAAA-AAGGTACATtaggataggaaagaaa-agaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGA-----------ATCCTC---AACAAAACACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGT-----------TATACACAGAAAAac------cttttcttctaaaatcagaGAGAAGACACGAATGTTCTCATTTCTATTT

a score=10107
s chr3           159331368 446 + 160039680 AATGAAAATGAAGCCACAACATACCCGAACCTATAGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTAGAGAGAGCACACACTACCAGCTTGACAACACAACTAAAAGCTCTAGAACAAAAGAAAGAAAATTCA--CCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTAAAATTAAC-CAAGTGGAAACAAGAAGACTATATATAGAATTAACAAAATGAGGAGCTGGTTCTTTGGGAAAATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGA---GGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAAC
s HiC_scaffold_1 133529731 416 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattcacacatcaggaaaacaga-----------------------------acctcaaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaagagcag-----aaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacata--aattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac

a score=19575
s chr3           159331645 906 + 160039680 AATCAACAAGATAGATGAACCCTTAGTCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAAATAACAACAGATCCTGAAGAAATCTAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAA-----------ATAGAAGAAGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGA-----------AGATCTAATCCCAGTTCTTCA-CAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGG-ATATCCATCAACGCAATC----CATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACT-------------TTCTACCTACCTCTTCaaaaattcctgaatagaacag
s HiC_scaffold_1 101526179 897 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaagaa----------atgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggtataataaaaaaa-------ataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaaccagacaaaga---------------aaaCTGAATGCCAATTTCCTCAAAGAATGTAGATGGAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaa--aataggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACC---TAGAACAG

a score=18329
s chr3           159331750 780 + 160039680 TGAAGAAATCTAAAACACCA--TCAGATCCTTCTACA-AAAGGCTATACTCAACAAAACTGGAGAACCTGGATAAAATCGAAAAGTTTCTAGACAGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGA---AGTCATTAATAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTA--------ATCCC---AGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAA-TACTAAATAAAATTCTTGCTAACCAAATCCAAG--AACACATTA---AAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTC
s HiC_scaffold_1  66567775 779 + 233722169 TGAGGGAGACGAAATCACCAATTCAGAACATACTACTTCAAAATTATATCAcaacaaattaacaaattttaaagaaatgcatgGATTCCTAGACGCCTAGTGACTACCAAAACTAGCCCTTGAAGACCAAAATATGCTTAACAACTCAGTAACAACCAATGAAATTGATAACATAGTCATTTATTAACTTA-----AATAAAACCCAAAGACATGAtgaatttactgctgaattctacagatCCTTTGAGCATGTTATATCACCAGTATTCCTcaagttcttaaaaaaaaataaaatggtagaatactcccaaattcatttatgGAAACCAATGTTACCCTGATCCCAAAACTGGATAAAGAACTAACATAAA---AGAACtgtaggccaatctccttaatgaattTAGGAGCAAAAGTCTTCAGCGTGATCC-----AACCAAATACAATGTAGTacattatcaaaaagatcatacatcatggtCAACTaggtttcatcccagagatgcaaggatagttcattatacacaaatcaataaatgtagtacagcATATAAAGAGGagcaaagtgaaaaaaagtaTGATTTTATCAACAGATACAAAAAAGGACTTCAACAAAACCCAACACCCCTTCAGGATAAAAACCCTAAAGCAAACATGTATACAAAGACCACACCTGAATAGGATAAAGGGTATTTATCATAAACTGATatccagaatcatattaaatggtaagaaactaaaa------ctattatgcctcaaaacaagacaaggatatccactatc-----acctctTC

a score=11148
s chr3           159331841 645 + 160039680 AGATACCAGGTACCAAAGTTAAATCATGATCAGGTTAATGA-------TCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGAAGTCATTAATAGA-----CTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACA----------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAG--AAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTA-AATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTT----GGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGT--------AAATGGTGAGAAACTGGAAGCAATCCCACTAA
s HiC_scaffold_1  56820348 651 + 233722169 AGAAACAATCTTCCACAAATAAATCATGAaaagataaacaacaaaaaattagaatGAATTTATAACCATTAA-------GATTAGATCTGTAACAAAAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaaataggaaaatctcCCTACT---TCTATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaaga----agctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActcactattaaaaaaaaaaaaaactagaagctTTTTCTCCAA

a score=12518
s chr3           159331927 590 + 160039680 TAGACTCCCAACCAAAAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCAC--------AAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAA----------------------------------------------------TGATC------------------------------------------------------------AGGAATTC------------------AAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTC
s HiC_scaffold_1  55056282 672 + 233722169 TAAACTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCTCAAACTTTAATGAAACTAAAAGGAAGAGAGGACCCA-CAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaac---------caaatccaggccaatctctctaacgaa------------------------------------caaat-caacaaatcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACTA--ATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatc

a score=14707
s chr3           159331942 586 + 160039680 AAACAGCCCAAGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAG---ATC-----TAATCCCAGTTCTTCACAAAATAGAAACAGAAGGTACTCTACCCAACTCATTCTAT-GAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAA-ATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACA-ATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGA-CAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAA--TCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCT
s HiC_scaffold_1 109368596 588 + 233722169 aaaaagcccaggacctgacagattcacagctgaattctacaaagcCTTTAAGGATGTATATCACAAATACTCcaagctcttcaaagaaattgaaaaggatacaTTACTCTCAAAATCTTTTATAGAATCCAGCATCACTCTgaacccaaaagaaaataaaaacctaacTAAAAAAGTGACTGATAAGCCAGTATCTTTAATGGACATAGATGCAGATATCCTCAGtaagatattagcaaatagaa-cGTAGAACATTTCCAACCATATCATATATCATGTTTAAGTAGGCTTCAT-CCAGAGATAGAAGGATTATTCAGT-TACATAATTCCATAAATCCAATACATCaccaaagaaaggagaaaggtcAAAAACCACATGGTTATATCAATAGATATAGAAAAGCCTTTTGACAAAATCTAGCACTCCCTCATAATAAAAAGTCTGAAGCAAATAGGCACTGAAGGACCAGAGCTGAAtatgataaaagatatttat--------gATAACCAGcaacatactaaatggagaaaaattgaaaacaattttccataaaaattaggaatgagacaaggatgtctcATTTCTATC-ACCTCt

a score=15010
s chr3           159331960 553 + 160039680 TGGGTTTA---GTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATCCCA--GTTCTTCACA--------AAATAGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACA----------------------------ATTACTCTGATAACTAAACCACAGAAAG-ATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAA-TACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGC---TGCCCAC
s HiC_scaffold_1 100235776 586 + 233722169 tgggattataggtacagACCTCTACAAAAATTTTAGAGAAGACCTGATGccattattttttacattttcctgaaATCAAAAGGGGAGGAGTACTTTGAAAGTCAtgtcctggaagcaagcattactcagATACCAAAGATACCAAGTATTACccagataccaaaaccagaaaaaggaccCAACCATAAAAGA--ACTGTGGGCCAGTCTCTTTAATgagcataaatgcaaaaatcctcaataagatact-gcaaacagaatgcaacaagtcatcaaaa-agttatacaccatgaccaaatagtATTTGTTCCACGGATACAAGGATAATTCAGtttgtgcaaatcaataaatata--ccaCAATACGAGCAAA------GACAAAAC-CATGTGatgatctcaatagatgcagaaaaagcatttgacagaattcaacatccattcatgataaaaactctaaagAAAGTTGGAATAAAAGATCTTTTTCTCAATCAGATAAAAGTCATCTCTAACAAGCTATCAACCATCATTATAGTAAATGGAGAAAAGCTGAAACCTTTCATGGTACAATCAGGAATAAGAGAAGGATGGTGCCCAC

a score=7847
s chr3           159331973 338 + 160039680 GAGTTCTATCAGACCTTCAAAGAAGATCTAA----------TCCCAGTT-CTTCACAAAATAGAAACAGAAGGTA-CTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATA-------CTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATG
s HiC_scaffold_1  73921692 333 + 233722169 GAGTTCTACCAGATATTTAAAGAAGTCTTAGGACTAGTGTTTCTTAGTTGCTTCCAAAAACTTGAAGAGGAGATAattcttccaaattcattttatga---cTATATTGCACTAATAACAAAGCCAAACAGAAACACTACCAA---AGAAAATTATGACTAAATATCCTtgatgaacaaagatgcaaaaaaaacCCCTCCCAATAAAGT--------ACTAAATTCAATAGCACATTCAAAGGATCGCACAACATGCCCATGTGGGATTTATCCCTGTGATGAAAGAATGGCTCAATTTATGCAT----------GTGATGTGCCACATTAATAGAATGAAGGACAATAACTAtatg

a score=9915
s chr3           159331978 513 + 160039680 CTATCAGACCTTCAAAGAAGATCTAATCCCAGTTCTTCACAAAAT------------AGAAACAGAAGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAA-AATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGA-----ATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATG-GTGAGAAACTGGAAGCAATCCCACTAAAATTA
s HiC_scaffold_1  22890715 514 + 233722169 CTGTAAAATCTTTGGCAAAGATCTAACATCAATAGTTCTTAAAATCTTGAAGGcaacaaaaagggaaataaaaatctcgaagtcattcctggaag------ttaGTCTTCAAA---AATCAGACAAGGATATCACCAAAA-AGGAAACTATAGGCTCATTTATTTAATCTATGTAGGTGGGACGATTCTTGACAAAATACT-GTAAGCAGGATGCAACACGTTCTCAAAATTATCACGCATCACAATATAGTAGGCTTCATTCCAGGGATAAAAGCAGGGTTCAACATATGCATGTCAGTGAATGCAGTACCTTATGT-CATAGAAGCAAGGACgtaaatcacatgattatctcaatagacacaAGGAAAGGCTTTGAAAAATTCCAACATATTTTCATGattaaa------caatgaagaaaatgcatatggaaagaccttatctcaatcaGAGAAAAGTCATTTAAGGCACACCTACTGccaatataaaaatgaatgaggaagaaactgaaagcttttcctctaaagtCA

a score=6044
s chr3           159332032 224 + 160039680 AGGTACTCTACCCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAG-ATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCA-AAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATG
s HiC_scaffold_1  33701927 212 + 233722169 AGGAACactttcattcttattttataaagccatcattatcctgataccaaagtCA--GAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAATATTA------------GCAAATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATG

a score=7664
s chr3           159332043 332 + 160039680 CCAACTCATTCTATGAAACCACAATTACTCTGATAACTAAACC--ACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAA-ATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCT
s HiC_scaffold_1 185532544 304 + 233722169 CCAACTCATT-Tacaaagc--------------taaataaacctgACAAAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAA--------------CTGGGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATTTCATAGAAAAATCt

a score=8229
s chr3           159332045 351 + 160039680 AACTCATTCTATGAAACCACAATTACTCTGATAACTAAACCACAGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAG
s HiC_scaffold_1  20135648 337 + 233722169 AACTCATTTTATGAGGCTATCATCACCTGGATTCCATTATCAGACAAGGACTTTATAAGAG--GAAAATTGCTGGCCAACGTCCTTGATAAACAGACATGCAAAATCCTTATTAAAATACCAGCAAACTGAATTCAGAAGCACATTCAAAAAATTATTGATCGTGATAAAATGGGATTTATCCTAG--ATACAAAAATGGCTCTACATATACAAATCAACAAATG--GTACACCATATTAATGAAATGaaggataaaaatcacacaataat-taaagagatggagggaaataATTTGTCAAAATGTAACATCTTTTCACAAATAGAAACTT-------TCAACAATTTAAG

a score=9207
s chr3           159332088 377 + 160039680 AGAAAGATTCAACAAAGATAGACAACTTCCAACCAATTTCCCTTCTGAATATAGATGCAAAATACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATT-------------AAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATA---CCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGA
s HiC_scaffold_1 124838658 387 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaaattta-caaaataatggcaaatcaaattcagtttaatgttaaaataata---catcatgaccaaattgCATTAGCTCT--GAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAA

a score=10461
s chr3           159332123 449 + 160039680 ATTTCCCTTCTGAATATAGATGCAAAA-TACTAAATAAAATTCTTGCTAACCAAATCCAAGAACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCaa-aaattcctgaatagaacagcaatggcttgtgctgtaagat
s HiC_scaffold_1  45948648 391 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaa------aacattagccagagctgTTAGGT

a score=5505
s chr3           159332183 188 + 160039680 AACACATTAAAACAATCATCCAACCTGACCAAGTAGGTTTTATTCCAGGAATTAAGGGATGGTTTAATATATGGATATCCATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAA
s HiC_scaffold_1  89596444 182 + 233722169 aaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaaga

a score=4466
s chr3           159332263 98 + 160039680 ATCAACGCAATCCATTATATAAACAAACTCAAAGACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATT
s HiC_scaffold_1  68361097 98 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT

a score=5602
s chr3           159332297 235 + 160039680 ACAAAAAACACATGATCATCTCATTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTCATGATAAAAGTCTTGGAATGATCAGGAATTCAAGGCCCATACCTAAACAAGATAAAAGCAATCTATAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAACTGGAAGCAATCCCACTAAAATTAGGGACTAGACAAGGCTGCCCACTTTCTACCTACCTCTTCaa
s HiC_scaffold_1 169467336 200 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAAT-AGGAATAgaatgtctttatct--------------caatct--------------gataataTGAAAAGAA-----GAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAA

a score=33353
s chr3           159335406 1899 + 160039680 AAAAGGTCTTCTGAAAACGTTTACTGACACTTGCAGCTGATCTTACATCTGCATAGCAATAACGTA------------AAAGAGATTCTGTAA------------CATC-----------TGATGGCTTATAGTAATGAAGACTACTCATACTCTCCCAGTAAATTGATTCTGCATATGCAAAGATGTCAGAGATAACAATCATCTTTCTTTTTCTATGTATACAAGTAAGCATATACATAACTACGATTTTATAAAG-----CAATGGTGATACTTAAATGGTATAATCAGATAAAATCATTCAGAAAAATCATCTTTCAAaaacaaacaatcaaacaaaaaacaaaaacaaataaacaaaaaaacaGAATTGGTATGAGGAGGCTGTATAAGTAGATAGGACAGAGACCCTCAAATTAGTTTTGGTTTCAAAACCAGAGAGGAGAGGGA---ATATACTGGAAAGAATCAGGCCTTGATGGCTATAACCCAAAGATCACCCTAATTGGTAAAGCTGTAAAGATGCTTTTCCATTGTAATATGCAGCAGAAAAGCTAAGAGTTTTGTGTGAAGAACCATGCTGACAGTTATAC-ATAAAACAC--TGAAGCAACAGCTT---GAAATGTATCCAGCTATAAAGAAGACT--ATCTTTCTTACATAGATAAACATGCAGTTGTTACATAGATAAAACATGAACCACATGGTAAAGCCAACTACTTCTCTTAACAAGCAAAACCTTTTGGAGGAGTTGTAGGAAGCCTGTATATAGTGTCAAATAAAGCA-ACAACAGCAAAAAAGACACACACAAACAAGAAAAGCTGAGTGAT-----------------------ATAATCTCTACTGCAGACAACTCA-------CACAATTC-------CACATCTTC----------------AGTTTTTAAGTTATTTCCTTAGTGTTAAAAGTGATTGCCACTACAGTTTATTAGGAATTTAAGAAATTCATAAGCATC-----AAGGTAAGGGCAGAACTATTTAAGGATGCTAGAGACTCACCCTGATTTTGGCTCCATGTTCTTAAGTACTATAGATTTAAGAAGGAGTTTCCTGAGGAGTATATGGCTGGTCAGA---------TTTTGCTTCATGGCTCTTAGCAAGCCTATGCTTCTCATCTGTCA--ATTACAGCCAGGTTCTAAGTGaaaacactg-------tcatgccttttggccttcagag----ccctctgaacttggta------------ttgccc-----------atacagcccatccactgcatcctccatgacaaattctccatcacctctctccactcactgctgag------tcctcagctgctaaatactaagtacttcctcctctcaaaactaggattatctagatggcttttatagcaagtGATTCCCTTTTAAACTGAGTCTTACATAACATATTTATGTTTATTGTATGATTAAGTCTTTCTACAAAGATTATGAAGTGGCTTATAGTAAAAGGCACTGAGATTAAATACCTTAATGGAAATAAA-----AGGACTAAGGAGAAA---AATATTAAAATGCCAAACATGAAGAATGGCAAACTCACCCCATTGAGGGAGTTCTCAGATCCTTC-CTGTGCTTCTTGTAAAAATATTCTCAGAAAAACATAAGGAAAATATTGTAACA-------ATTCAGAAGAAAAAAAAAGCATCTTTCCAGCAAGAAATTCTAAAGTCAAACTAATTGTAGAAGACTGTATACAGCAGGCCTTAATGCATGTAAAAGACAATGATCTCAATACAGTGGGCCACATTATCCCAAATAAACTTCAAGTGGACTGTTCTTATTGTATCACT--ACATAAGTAGATCTAATAGTATATTCAATGCAACTTGCTGTCTGCACTTTGTCAATGG--AGAATCAAGACTAGCCTTATAAAATAGCCTCCTGTTAATTTAGTCTGCTACAAAGATAGGATTTCTACAGATTCTGTGCTTAAAAACAAGCTTTCCTAAGT--TCTTTTCCAGGTGGTCTTTTAATAGTATAAATTATATCATACT
s HiC_scaffold_1 146555105 1924 + 233722169 AAGAAAACTACTTAAGATAGTTACTGAGACTTGTA-----CCTTATGTCTGCACAGCACTAAATTAggatttgaaagaataaaaattccagaaaaagcATCAAAGCATCCTTAAATTTTATGAGGTCACCTAGCAGGGAAAATTGGTTATTTTATTCCAGTGAATTGATTCTGTATAAGCAAAGACCGTATAAAT--TCACCATCTTGTTAACTTTG--------AATAAGTATATATATC-CtacgattttttaaaaagtaataacgGTGATGC---AGAGAAATTGTCAGATATAAT--------------ATCCTT-----------------GCGGAAGACATGA-------------------GAATTGATATAAGGAGG-----TGAATGAATAGGGTAGGAGACCTCCATATACTTTT----TCaacagaaggagagagacagagacagagactgtaGAGAGTTGGTCCTGACTGGCTCTATCCCAAAGGTGTCACCTCTTGGCAAAGTTACAAAGATGTCTTTTCACTGTAACTTGCAGCAGAAAAGTT-AGAGTTCTCTGCAAAACAGCATGGAGACAGTGATATAATGAAACACTGTGAAGCATCAtcatacagaaaaaaacaca-caggGAAGAAGACTGCATCTTCCTT----------------TGTTACTAAATAGATACAACATGCA-GAGAAGGCATGTCAATTAACTTCTCTTAATAAACAAAAGCTCTCTGAGAAGTTGTGGGAAGTCAGTAGATAGAGTTACATAAAACAGACATAGGCAAA----------ACAAATAAGTAAAGCTTATTTATTAGGATTAGCTTATTCATTAGGATTAATTTCTGCCCCAGGTCACTTAGgattctcattgttctgttgaGTACATCCTCACCCAGTGCATCCTATAATCCCGATGTTGGTTCCAGAGGGTGATGAATGATTCTCACTA-ATTCTCCCACGAAGTTACCAGACATAT-GGCATCCTTGAAGTCTAGGGGATGAGCTCCTCAGGGAC-CCAAGGAGTTACTGTGAT---------GTGCTTCCTATCACTGTAGGGGTGAGGGGGA------CCACAAACACAACACCAGTCAGAACTACTCAGGTCTGCCTTGTGACTCCCA-CAATCAGCTGTTTCAGACCCACCACGCTCCCAGACAGTCTGTAAATG-GACCAGTGGTGTGGTTCGTGCTGCTGTGCCTTTAAAgatgttcttcttttcctaggaAGCCTTATTCCTTTGCCTCAACCTCTGGGATGTAG-CCATGTGTTGAGTCACTGAAGACA-------TACCACCCTTTCCCAGCTCCCCCTAGGAATTTCTCCTGAGTCGCTTGGTTCTTTGCACTCACCTTGCTCAGAA----ACTTGCATAGG-AATTATTGTAGCAACAACTTCCCTTTTAAACTGACTCTTATTTaatgcatttgtatttattttatgcttacATCTCTCCACAAAGATGTTGAGGTAGCTTATAATAAAAGCCACTGAAGTCAAATGtttaagtaaaaatagaaaagtagaaccaaggaaaaaaagaacataaaagtgTCAAATATAAAGAATAACAATGTCGCCCTGCTGAGG----CTTCAAGTACTTCTTTGAGTTTCTTGTAATCTGCTtacaagaaaagca----gaaaatattgttTCCCTTGTTTATTCACAGGAAGCAAAA---CTATTCCTAGCAgagaattctaaaataaaatttat----aaactctCTCTACAGAAGACTCTAATCCACATACAAGACAATGTTCTCAACATGGTGGACAAAAATAGCTTAAATGAATTGCAAATAATTGTTTCTTATTTCTATACTTAGCACAAGCAGAGCTCATAAGAT-TAAAATACAACCTGGTGTTCGTAATTCTAAAATGGTCTGAATCAAGG-TAAACTAGGCAAGTCGTCCTCTGCTAATTCAGTTTGCTGCAAGGATAGGATTCCTCTAGGGcctatctttaaaaataagttgTTCTAAGTACTCTTTTTCACATGTTC-TTTAAGAATAGAATTTAGGTCCTGCT

a score=29980
s chr3           159347206 2163 + 160039680 TCAGAAGACtgtagattattgacaac---ataaatggtttacatcagtaagtatgtaca-tgatattgactggcataaaaaaaacattactttttcctttactatgggaacactggtttatatctgttagatatataactttatatctaaattcaagtctgtatctg------aatggcctgttaa-atatctactctttggtgtcttcctggaaccaattgtaacatcttattcacttcctcactaatcaataacttatataaagtaattgaa--atgtttattttacattt--------tctatagtggtgatctcagctattttttttttaattatcccttaaAATTGAAG--ATTGGGAGTAACT-TCACATCATTCAAGGATTACCACCAA----AGCCTCTCAGATACTCTTTTCTGGTTTACAAATTATGTTAGC------------------------------TGATTCTTATGATGTGTAATTGGCTCTGTTAGTAACTTTAGGAGGC-ATGTTCCTTCTTATAGATGCTTAGTATTTTGCATTATTATGAAACAGATTCAAGGCTTTATTT---------AGAAAGACACCTTCAGAAAATCAGAACAATTTCATAAT-ATACCTTCCATGCTCTTACTAACAGCCCTG----TCCTTCTAATTCCACCAAGTAATAGGAAAAACAAAAAGAAACAAACAAAACCAGATGATTCTGCCTTCCTAGGGCCTTAGCTCT--CAATAGAAT-CTGTGT--GTTTTACTCCCAGAAAGACTTCCTATGGCTATCACTCAGAAAAGCCTTC-CTGAAG-CTTCCCACCCAGATGTCAGACACTGGCCAAGGTTCCAGGCCCTTGTCAGACTTACTGATTCC------TTCCAGGGTGG----TGTTAAG-----GGAATTCATCTCCTCTTTTC---AGCTTACAAGAAGAAGTGAAGCCTTCTA-CCTTCCTGTCCCATAGTCTCTAAATTACATGTTTTCTACCTTAATGGAAGGGTGAATAGCTTCTGTACTCATTTATAAAATAGAGAA-CAGATGGGGCTAGCTTGTTTTGCAAAGACAACTAGTTATCTTATAAGTACAGATGGAGTAAGTAGCACAATTATTACCAAAGAATTGGGCTCTGCGGCTGCCAGATGGTTTGGTTAAACGGAAAATAAAAAATCAAAA--------CCATCTGCCATATTCACAGCAGGGATTACCCTGCTCTTTTGGGTATGTAGAACCATGAAGAACTAAGTAACCCTGCTATGCATTTCCCATTTTATCCTTCCA-AAACACAGCCCTTCTCCCTGTCTAAAAAAGAGAAAACTGAGGACAACTGGGTCTAGCAGTAAG-------------TTAGCAAGCTTTTCAGAGGAAAAGTAGAGTACTAAGAAGAACCACTTGTTCATAACA--CAGCTGCTGTC--AAAAATCCACTTTTAAAAA-------ACAAGAACT-------------CAGTTTTAAAATGGAACACTGATATTC-------TGCTTT-GTTTGTTG------CCCTAGACCAACACTAGCATTCAG----CCCCTTCTTTGCCAGTCTACC------AGCAAAACTGAACTGATGTTGCTAACTTTACTTCAGCTCAGCATACACATCTGTATCACATATATATCTCTAGGTTAAATTCATTCAAAATACCAAGT--------------AAAGGAAAAAATAT------AAAGTAAACCAGTTTTCCCAAAGTCCATATGGCTTATAAGGCAGTCTAAGCCAAGTGGCTAATTTTATCA----------TTCAGGAAAGG-------CAGACATCTGAA--TGCTCTGCAGATGAGACCTTTAAATGTT-ATACTGGAGCA------CCAAGCACCAACAACCTGAATAATCCAGTAATTCCTAGACAGAATCGTCCAGTTATAATTATTTTCATCATAAGTGCCATTGCTTATTTAGCAAC----TGTCCCAAAGAGTTAGCTCCTCATATTTTAACATTTGAAAGAGTATTGCTCTCCAGAGAGCAGGACCTATGAAAGCCAGAATGCAAATGAGATGGGCAGAATATTAGCATATGTTAGGGCAAGGACACAATACCTATGTTCTAGAATAGTCACCAATGATGACTTCCATACTTCTATGCCTTTTCTTCCCTTCTCGACTTTGTGAGGTCATTTTA--AAAATGTTTTAGAATCTGCACATAAGCAACTATAGTGTACCCCTATAACTCTACAGACT-----AAGTCATCCCATCAGCAAATGTTTATCAAATCTTCACTCTATGCAAGGGACTTTTACCATGAAAAAGCCACTAAAGGTTGTTGCAATGATAGTTCTAAAGGCAGA
s HiC_scaffold_1 146564438 2264 + 233722169 TCTGAAAATGGTAGCTAATTGATAGCCGTGCAGATCGTGTTTATCCGTAGCTGCACACACTGACTCTGACCGGCGTGAGAG---CGCCGTTTCTTCCCTCACTCTAAAGCCA--GTTTTGCACCT-------ATACAGCC---------------AGGCTGTACCAGCCTCCTAATCCCATGTTAATACATCTGTTCTTTGGATTCACTTTGGAGCTCATTGTAACTTCGTAGCAGTTTCCTCACCAATTAGTAAGTTAAATAAAGCCGTGggcttgtgtttcttttccacGTGTTAGACACCGACAGTCGGGACTTTAG---TGTTTGCTTACATTCTTCCCTAACACAAGGGCTATTTCATCCAACTCTTGTCTCCTCTGAGGA-----ACCAAGAGCAGCCTCCTGGTGGAG--TCTCTGGCCTGTAGATTCTGGTGGCATAAAGTTGATGTGCTCTATCAACTAAGCCTGAGTCTCAAAATATATACACGGCT--GTTAATCACTCGAGGACACTATATTAACTCTGACGGGT-CCTAGGATGTGGCA--------GATTAAATTGAAATCTTCACTCTGCAGATCCAGAGAGACA-----AGGGAGTCAGAACAACCACCCAGTGATGCCCCTCTGGTCCGCTCTCTTagcctttctccttctttcagtTTCAGCAGCTTCAATGGGAAGCAGAA---------------CAGGCGGTGCAGGCTTCTCCAGGCTGGCGCTTCTCCAAGCGAGTACTGTACTCGCGCTGCCCCCACGGAGCCTCCTACAGCCCGTCCCTCAGAGCAACCGTCACTGCAGTCTAGCGGCCCGGGTGCCAG---CAGAACAG------AGGCCCTCTGTAGACGCATTCCTCCCCTGCAATTCCAGGATGGAAAATGCTGGGCTCCCGGAACGCATCATCTCTCTTTCCAACCTTGTGAGGGGAAGGAAaggcctctctccctcccttcccatc-CCTCCAGGCTACCTGTTGTCCATACCCA-GGAGGGGTGTGAAGCC-CTGTACTCATTTATAAGGTAGGGAAACAGATGGG-CTAGCTTAATTTGCAAAGGCAACTAGTTAGCTTATAAGTACAGATGGAATAAGTAGCACAATTATTACCATAGAACTGAGCTCTGAAGCTGCCAGATGGTttggttaagaaaaaaataaataaataaaactggaagccTGGCTGCCAGGTTCACAGCAGAGACAATACTGCTCCCCAGAGTATGTGAAACCACACAGACCCAAATCACCCTGATATTTCTCTAGCATTCTGTGCTTCCACAAATACAG--CTTCTCTGTGGCtgcagaggggaaga--gaggaagacCAAGGCTACCAGCTGGTCGGAATAGCGTATTAGTAAATATTCCAAAGGTGAA-CAGA----TAGAAAGGGATGTTTGTCCACAATATTTAACTCGTGTCTGAaagcttcctttttaaaaagttaaggacAAAACTTAAAGGGGAGCAGACGGCTGCAAAGTAAAACCACGGTGTCCTTGGTGTTGTTTTGGTGTGCTGTCCGTCCCCCAGGCCAGGTCTGTTTTTCAGAGCTCCCCTTTCTTGGCAGTCTCCCTTAGAAGGCGAGATCCTCCTGACGC-----ACTGTGCTGAGGCTTTGCGTCCAGAGCTGT---ACACGGATATCCCCAAATTAAGTTCACTCGGAGTATTCAGTTAATTAGTCTGGCAAAGCTAAGAAACATTTCAAGAGAAAAAGTCTGTCTGCACAAACTCCGGGTGGTTGATTGGGCGATCTGAGCCTCGTGGCTACTTTTATCGCTTTTATCATTTCTGGGAGAGTGGGGTTCATGCAGCAGCAGCTCCTCAGCGGGTCCCATCCCTCAGTGCTGATGACAGAGGGAGGTGTCCACAGGCCCACGGAACAGAGGAGTCAGTAATTC----ACAGGGCTCTTCCCTCAAA---------ACCATAGGTGCTGCAGCGTTTTC--CAACTTCTTGTCCCAAAGGGTTAGCTCTGCTTATTTTAGAGTCTAAAACAATATT-CTGTCTTGTGGCCAGAAGCCATGAAAACCAGGATTTATG-GTGATCAAGAAGATCTAACAAGATGCTAGAGCTGGGCCTCAGTGGAGATCCTacagaacaaatgcaaaagatGCTTGACATATCCCCAAGGGTTT-----CCTCTTGTGTTGTTCAATGCAATTtcaagaaagtattttaaaaggatcaaataaataattacatCCTTCCCCTAAACCTCTCCCTGCTGGCTCATGTCCTTCACTCCACCACTGT---TCAGATATTCTCCGTGTGC-TGTGACCGTGGCCGCAATACAAGTGT--AGTGTGGTTGCCATGTTGACTCCAAATGCAGA

a score=14684
s chr3           159372549 1263 + 160039680 gggtgtaaaataaataaataagttt--agtttaaaaaagaaaaaaataTGA--TCTTGCAATGAGTGAAGTTAG-----AAATAGCTACAGAAGTACTGAA------AATGAACATTAATATGAAAGTTAAGGTGTAATCTGTAGCATACATGTCTCTTCATAAT-ATTTACCAGACACATCAGCAAAAGAATACTGTCAACTCACTCCTGA------AAGGCCTGGGCAGCTTAAGATAGGAATGTATAGCTT--------GCTTCAAATCTCTTTCTCTGTGGTAGAAATGGACATGAGAAAAAGAGAAAG-----GAAATATTCCAGGGCACCACAATATAAGACATTTCTCAAAAAATATC----AAGTTGCTTTGGGGGGGGGGTAAATCTTTCTTGGAAGTATTACAAGACATTGCATCAATAAGGTCAACCAGTCAGTG-GAGAGATGGATACCTATTGCTTTTAGAAACTTAATGGTTATCTCTGTAAATTGGAACTCAAA---TCAAAAACTTCAAAATATCCTGTTTTTTTTGGGGGGGTTTTGTTTTTTTGTTTTTTGAGGTGGGGTGATTCTGTAGTTTTATAGATAACTTCTTTCCTTACTTCTTTGAGGTGTCTTTTCTTTAACACATGACAGATAATTTTGATTTtacatacacgtacacacatatacatacatgtatgcatatgcacatatgcacacaattttttacacattgttctttgggttctacttatTCTGAACAGAGTGTATAACAGAGTATATTGTATGGGCATACAATAGCTAATAAACACAATCTAATGGGATTACCTTCCAAGTAATGGAGGGCAATCTAATGAAACTGTCATTTAAACATAACCCAGGCACCTCTGTAGTGGCAGCATGCCCAGTTTCTT---TATTATTAAACA-----TCTCAGTGGACAAAGGAAGG-GGACTTATGTTTAATAGGATCAGCTGAATCTCTCTC---CTGTGCCAAATCTTTCCCCTTCACATGAGTATTTCTGAATCTTCAGAGAT--CTTTAGGAAACAAGAAATATCAATAAACAAG-AAAAGTATGATTTTCCTTTTCTAAAGAC--TACCAAAAAGAAGTAAGCA-----ACGCACTGTATCTTAGATATAGACAGGCAGTCTTGGCTGTGAATCTGTAAATTAT--GAAGATCTCAGTCTAAGGAAGTCTATGTACTGGGTCTTTGTCTTCCCCTACATGTTGTGTTAATACAAAATGGCTGTATTATCATTTTAATATATAATTTTGGAAAT-TTTTAACTTGCAGGATTCAGTTTCCAATGTTACTTCTCTGT
s HiC_scaffold_1 146571925 1197 + 233722169 ggatgtaaaagaaaaaattatattgtaAGTCTGAGactgtataaaatataaagtataatgaTGACTAGAGGCAGGAAGCAAAAGGCCACCTAAATAAGGAGGACATGAAGGAAAGATAATA---AATGCAGAGTACACAGTAGAGGGCACACACCTCTTCCCGAGGATTTACCAAAGTAA-----AGAGAAATATTGTCCG-TGACTCCTGAGTGCAAAAGATCTGAGCAG-GTGTGGTAGGATTGTTTAACAGTAACATAGGCTTTACATCTATC----------AGAAAGGAGTGCTGGGAAGGAAGTAGGAGCGAGAAATATTGCAGCGCACTAGGAAATAAGTTActcctcagaatattttttaaaaattg---------------aaataact-gCAGACGT-TTGCAAGCTAGTGTGTGACTGAGGTCATGTGAATAGTGTAAGTAACTGACACCTTATGTTTGCAG---TTTTCTGCTCTTTGCTGAAGGTCTGATTTCTGAATCCCAAAGA--------------------------------TTGTGATATTGTTATGGGAGGCTGGGT----------TTTCACTGCTGACTGctcagtctctttcttt------tctattttatgagaCAGGCAAGC--ATTTTGATTTCACACCCacgcacaagcacacacacacgtgcacacacatcaTCCTCTGC------------------TATTCTT-GGGTACCACTGCTATGGAACCAGGC-CATAATGACAACTA------GAGCGCCCTGTGACTGATAAACAGTGTCTAATGACTTTGCCTCTCAGGAAATGGAGGATAACAGAATGCAAGTGCCTGTTAAACACAATGCAGGCACCTTTGTGGTGGCAAGATGCCCAGTTCCTCAGAGATCAGAAGACATTAATTCTCGGGGAGCAAGAGAAGGAGGGCATCTGTTTTGCAAGCCTGGCTG-ATTTTTCTCACTCCATACAAAGGCCTGGCTCTG-AAATGGGTATTTCTGAACCTTCAGGAATGCCATTAGAGGATGGTGAATATGCATCAGTGGGCAAAACTGCAATTGTCCTTTTTTAAAGATGGtacc-aaaagaaggaaacaaacatACACAAAGTCACTTAGACGT--GCAGATA-TGTTGTCTGTTCATCTCTAAAGGATCCAAAGATTTCCAACTCAAGAATTC--TGGCCAAGGGCCTCTCTTTCCCTGCCATgtagtttgaaaataaaatg-----attgtcattgtttaatttaattttggaaatatcTTAACCAGTGACATCTA-----CAGTCTTGCTGTTCTGT

a score=4789
s chr3           159384986 100 + 160039680 AGAACTGAG-CAGCTGATCAAAATTAAAAGCAAATCACATATGCAAAAATAGTTTGGAGAGAAGCTCCCAAGCTTTTTAGTAGCTTTGTTCATATAGAAAA
s HiC_scaffold_1 146590013 101 + 233722169 AGGGCTGAGGCTGGGGATCAAATTTAAAAGCAGCTCACAGATGCAAAAGTAATTTGCAGAGAACCTCCCAGGCTTTTAAACAGCTGCTTTTGCATATGAAA

a score=22712
s chr3           159391999 1110 + 160039680 CCAGAAAGGTAATACCTTACCACTTCATAAATTAGCCTTGAC-CAAAGTACAAACTCTG-TAAGTGGAATACATACCCAGGACCCTGGCATGGACTTTCTGCAGCTGGTTTGTGTGTCCTTCTCAGAGAGAGAAGTAATTTTCCTTTAACAAGCCTCTCCACAGTCTGAAGATTCTGGG--AACATTACATTTTTTCTTTTGCAGAATGAACAGGGTTTGTGGTTCCATAGTAACCACAGCTGAATCATTCAAACTGAGAAGCTTGCAAAATGGCAATTTACCTAAGGATGTTTTTTATAGCCTGTTATGTTATAATCCTAATGAGATGACTTCTCATCAAAGCTATTATTATTCCAGGA--------------------------ACAAGAAAACACACACACACACAC----TTTTCAGTATTTTCTCAGAGTACTACAAGAAACAAGAGAAAAGGAGAATATGT-ATACTTCATCAG-------TACTGTGTTCCATTTCAATTCTTGAAACAGAGCTTCATTTTTCATC-TAAAACATCTGGGGTATAGCCACA---GAAAGAACATCCCAATCAATAGAAACACTG----CATCTTTAATGCCCCCAGACATGTTCCTTAG--------------CAGGGAGCACTCATATTAGCACATGATGTACACAGCTT----TCTGAAAGAACTCCAAAACATGCTCACAGTCCTTAtgcaccacagtcatctggagatattttaaat------tacagaatagaatgttctacccct---atttttcattctgtgtatttaagatgaaactcaggaGGTGATATTGTTTTAAGGTAAAATTT-------------GGCAGTGTGGTAAAATTTGGCATTCACGGCTTCCATAGTTCATGTAGCGCTTTTTGAACTAA-AAACGACATTCACATTAGGAGAAATTCATTGAGTACCTTTATTGTTTAGCATC-CAATATACAGCTGAAGT-TGGGAGGAGGGGGGGATGTATATGTACAATGATAACTTTCATTTTAAATGTTATAATTCTCTTATATTTTATTTTTATGATTTGAAATAACAACAATTATTTTTTCTATT---CCTAGATAAACAAAATTCATTGCTTCAAGAGGAAAAATGTAAAACATAAATCAGAATATCATATAAGGATTCTACCACAAAGAAATCAATTTCTAAGATATG
s HiC_scaffold_1 146591811 1152 + 233722169 CCAGCAAAGAGGCACCTTAACACTTCAAAGAACACCCCCATCTCAAAGCGCAAGCTCCCCTACGCAGAAGGTGCCCCTGAAATCCGGATGTGGACATTCTGT-GCTTGGCTGTGTGTC-TTCAAACGGAGGGCAGTTCTTTTCCTTTAATGAGCTCTTCTGCAGTGTGGGGACACTGGGGGACCATTAGAATTTTCCTCT-GCCAAGTGAACAAGGCTCGAGGTTCCATAGTAACCACAGCTGAATTATTCAAACCGAGAAGCTTACACAACAGCAGTTTATCTAAGGATG-TTTTTATAGGTCCTTCTGCTATAATCCTAATGAAAGGGCTTCTCATCCAGGCTGCTATTATCCCAGGAAAAAACACAGCACacaccacacacgcacacaaatacacacacgtacacactctatttttagtcttttctcaGCAGCGTAC-----CCTGGGGAGGAAAAGAATGTTTGGTGAGTGACCAGTGTTACCTGCTACCTTCCCTCCCAATATTTCAAACAGAGCTTTCTGTCGAATTACAACACATCCGAGACATAactagagaggaaaaaatactgcCCTCAGCGGAATCCCTGATTACACCTGTAGGACCATCAGAAGCTCACCTGGgggcagagaaagagacagagag-actcaCACT-------------CCCCACTTCCGCTCTGCTAGTACATCAGTGCGAATCTACGGACCTTGTGCATCGAACTCACCTGgagacttttgttgttgctgctacAGATTTCAAGGTTCTACGTCTGGAATCTCTCGTTCTGTGTGTCTGAGACAGAGCCTGGGttacagtattatttt---ttaaagcttctcTTGCATGTTATGCAGTA-AATAAGACCTGGCAGCAAGGGCTTC-------------------TCTGCACTAAGGAGTGACTTGCAGGTGAGGAAAACTTTGCTCTGAATCCTCAGGGGGTGCCGTTAAAATATGCGGTTGAACCATGGGCGTGGGAGTGCACCCACGTAT-------CAGTTTTCAGTGTAAATGCCAACCACCCCTCAAATGCAATTCTTCAGATTTGAAATAACCAGAACTATGTTTTCTGTCTCACTTAATGAACCAGCATTTGTTCTATTAAGA-AAAAGAGGCAAAATATTAGCATTAAGGATTTAAGAGGAGTCCAAATTCAAGAAATCAACACTCAAGGTGTG

a score=12342
s chr3           159397596 399 + 160039680 GAGCCCAGAAATGAAATGCAACCCCGGTGGCTGTTTAATT-----CTCTTCTCTTCACAACAT----AGTCCACAGTAACACTTGTATTCAACTCCAAAGCTGGCTGTTCAGAAAACCAGCAGCATTTTCTTGGGTGGCTTATTGTGTCTGGCTAGCAACAAAAGGGAGAACCATATGAAACTGGAAGAGGTGACAATGTAGGAATTCGAAAAAGTTCAGTGATCTTTTAACTGTCAAACTCCTTGACAGAATTTTTTTTAAAATGACAATCAGGTCCTGAGAAAGGGTATAATTTCCCCAATCAGATAAAATAGATAATACTGAGCTGTAACCTGCAGTGAGATCTCAGGAGAGTGTCTCTCTCTCTCTTCACCACTCCTTCTTCTTCCTTTCT-TTTTTTCCTTTCT
s HiC_scaffold_1 146602980 366 + 233722169 GAGCCCAGGAAT-AAATGCCA--------GCTGTTTAACTTGTTACTCACTTCTTCCCATCCTCTCAGGCCCACAGCAGCCTTTGCATTCAAATCCCAATCTA----TTAAGGAAATTTGCAG------------TGGCTGGCGATGTCAGCCTAGGAAAGCAAAGGa--------cgggggggtggggggtgacAGTGCAGAATCTCAGAAAAGTTCAACAGTCTGTCAACTGTCAGCCTCCTTCTCGGAACATCA---GAAATGACAACCAGTTCCTGAGAAAGGGTATAATTTCCCAAACCAGATAAAA-AGACAATGCCGAACTGCACACTGCAGTAAAATCTCAGGaaactttctctttctccct------ctctttctcccccctCCCCACCTTCTCCTCTCT

a score=23206
s chr3           159399177 802 + 160039680 TCTCTTATATGAACAATAAAGGTAGAGATATTGTGTTTTACAAA-TATACATTAAACT---TGAAATGGAATATTTTCTCTATAAATCATATATCAGCCAGTGATGGTGATTGTAATAAGTAAATGTGGCCTAGAAGTAATATGGATACTG----CTCACCATGCAC---TGAAGTTAGATTTAATTTAATGTATAATAAGAAATTTTGTACAACATGTTTTGGGGTATTTTAGGCAAAGATTTAGTGCAAGTCTCAATTCTACTGGTGCTTGTAAAAGTTTATACTCTTCCTCTAAAGCGA---TTTGGAATCAACGTCATTGCATATATTAAGAAATAAATACACCACAAAG------TTACATCTATCCAGCTGTCTGGAAGTAAGAAATAGCCATTAATTT-TGTTGTGCTTTCCATTTTTCATAAATGGCACATAT----AATAAAAAATAAACACTTGAAAGGCAAATTAATACAATACAACCTTGTT--ATGAGAGACTCGCTTGCCAATTTTAAATAGACTGCCATAAATACAGAAATGCCATTTCCCTCTGCACACTAGGGCAGACTTTTCTGTG----ATCACAAGAATTTAAATTCTGC------------ACAGGAAGGC-AATCAGACACCAGATTCAGTGGTTAAGTAATCTCCATTTGAAATGAAATATATT---------------TCCATTAAACTTAAAAGAGCAGAATCTTAAAGAGTTAACATACAAAGATCTGTGTTGATGACACAAGAAGGAATT---ATTTTCTCAGCACTCAAATTGATAGATTTTACTTCCA-TGCTGACATGGCTTGTTTGTCAATTATGTCAGAAACTATGGTAAGTG
s HiC_scaffold_1 146604505 830 + 233722169 TCATTTATATGCAGGCAAAAGAAAAGGCCAAAGTACTTTTTAGAGCGTACATTATAGTAGGGGAAATAAGAGGTTTCCCTCACACATCAAATATGGGCTGGTGACACTG-TCACGATGAACAGACTGGTCCTGGAA----------TCCTGTTTCCTCACCAGTCACCAATGAAAGTAGGTTTACCGCAATGCATCA---GAAAGTTTTTATAATCTGCTTTGAAGTATTTTAGGCAAAGATTTAGTGTGAGCCTTAACTCCGCTTGTGCCTGTAGAGATTTATATTCTGCTTCTAAGTCAAATCATTTGGATCAACTCCATTGcatatattaagaaataaataccCCATAAATATACTCTTACACCTCTCCAGCTCTCCAGAAGCTCAAAATAGCCATGGATTTGTGTTGTGCTTCTCATTTTTCAGAAGTGgcacatacaataaataaataataaatacttgaaaGGCAAATCAATACACTATCACCTTGTTAAAAAAGAGGCTTTCTCACTCATCTTAGACAGGCtgtcaagaaaacagaattacCACTTCCTTCCGCATAGCTGCATGAACTACAACACGCGCTACCTCAGGAATTTAAATTCGACGTGCAGAGATCAACAGGAAGCCTAATAGTGCATCCCATTCAGTTTTAAAGCAATCTCcttttcaaatgaaatatattacAGCTGCAAGTGTCTCCATTAAGGTTTTATGCACCCATCCTC--------------------TCTGTGTTAATAgcatagaaaagaattaaaactcaTTCCATGTACAAACAAATAGATTTTATTAGCACTGCTGGTGATGC-CATTTGTTATGGGTGCCAATTACCATGACAGGTG

a score=39794
s chr3           159416837 1343 + 160039680 AAGATGCTTGTAAAAATAAATAGTGAAAATAAGCACAACACAAAAATGTGACTAAATCAGGGAAATGACAGTAAATAAA--------ATTATACCTTTTAAATATTCATTTTACAAAGGACTAACTGTAAATATCAGCTTCTTGTACTATAAATACTTTCAACAAGTGAAG-AGATG-TTTGGAACAGGACATAAATAATGAAATAAGAGTTT-ATTCAAAAGTTTT-------------------------------ACACAATATAGGTTA----AATTTTATAGATTCCTATTCTGCTGAGAAGGGATAGAA---------------------GCACACAGTGAGGTTCTCCTCAGAGTGGTGTTTGCTCTGATACCCCAATTAACTGTTGTGAGGAGTGGCCACACAGAATCCAGCCTCATGTCTTCCCTATAAGATATTTTCTT----GGCATTGACTATGACGAA---------------------AAGTTGATCAGTTCTATGATTCATCAACAGATGTACCCTAAG-GAAACCACGGTTCTTAAGCCACAATCTCAGCATGCCCCACTCCCACCCTATTCTTGCAAA-AGCCACAACCACCTTGTTCATGGGTAGTGTTCAACCATCCTCCTCTTTATTTCTCAGGAGGTATAACTAGTAAAAATT--GAAATCTGTGTCATGCAAATGGTCTTTATCATCTTAAGCTTTAAAAAAACATATTTTAAGAAGATGGGAAA-TATGCTGTGTTCTGTAATGGTTGGCAGTGTTCACTTTAACTGAGTCACTTGTTAGGGCAAAATTGTTCTAACTTATAATAAGTGTTCAGAGTGTTGGATGAATGCTTTTACTGAATTAATATTTTATAGCTCTTTGGCCTCATGTGAGATGCCAGCTCCACTGGAAAGTTCAAGCTCCATGGAAACACTGGGAAATATTTTCCATCAATTGTTTGAATGTTTGACAGATAACAGTATGGTACCATGGAATTAAACTCTGATAATGATGATTTCTGTTGAGGTTATAGCCTGTTTTATTCTGTTAGTTGCAGTGTGTGGCTTTGTTTTATTTTTAAGCACTTCGGTCTCTGTCCTTGTCCATAGTCACCTCTTTTCAAACCTCAATGTCAGTAAGTATTGCATTGTCTACCTAATTATCTTCAAACAACATAAGA-ATCAAGTTT--TTTAATTAAAAATTCTCTGCACTCAAAAAAAT-TCACTCTGTGAGCTATGATTAAATC--CTTTTGTAGAAATTTTCTTTAAAGAAGAATAAAAAATTCTAACATCTTTTCAAGATTAAACTACAATGTTAGTCACAACTATGCTAGACTTGAATTCCTAAGCAAAAAACACATAGTCACCTAGCTAGAGGAAAAACAATCTTTGTAATCTTAAAACAACAACAAAAAGCCTCAGTGTTTATTGTGTATTGT
s HiC_scaffold_1 146666007 1383 + 233722169 AAAATGCCAGCAGTGATGGTTAATGAAAT---GACTAATGCCAAAATGAGCCATGACTGGAGTTATGGTAAGTGATAAATGTTATCTgttagacttttaaaataatc--tccATAAATAACTAACTGTAAGTCTTAGCATTTTataccataaatatttttaagagataaagGAAATGATTTGGTGGAAAATACACATAATCAATGAAGTCTTTCATTCACAAGCTATGAATGTGCCTAATTTAAGAGAGatagaagagaaatagttcagtttacaaaaattatacaggTAGCC-TCCAGCTGGGAACAGAaatgatattttttgtttcttctttcagtgcACAGTGTTCTTCATATCTGAGTGGTCCCT-CTCTGATA---------------------------------GAATCTGggctcccttcttccctttcaggtattttcttccttttctttgacTGAGACAAAGATCCCTTTTCTTCCACCTCAAAGCTCACCAGTTCTCTGACTCCTGAACAGCTGTGTCCCAGGAGAAACAAACCCGCGCCAGTCCTGACCTCAAAACCTCCCTCTCT-GCGCCATACTTGCAGGGAACCAGAGCTACACAGCTGGTGGGTGTTGTTCAGCCTTCAACCTCCTT-CCCCTTAGAATGCACACACAGTGACTTTGCAGAGCTCTCTGTCATGCAAATAGGCTT-ATTACCTTCGGTTTTAGAAAAACATCTTTGCAGAGAATGGGAAGGTATGCCCTGTTCTGCAGTATTTGGCAGTGTTCATTTTAACTGAGTCACTTGTTAGGGCAAAATTGCTCTAACCTGTAATAAATGTTAAGATTGTCGGATGCATACTTGTactgaattaatattttatagcTCCTCGGCCTTGTGTGGGCTGGCTGTTCTATTGGATTGCTCTAGCACCATGGAAACGCTAGGAGATATTTTCTCTTAATTGTACGTATGTTTGACAGATAACAGTAGAGTACCATGGAATTAAACTCCATTGCTGATGAATTCTGATCAGCTCATAAcctattttattctattcattgcaatttaggtttttgttttattcttaaacATTGCAACATTCATCGTTCTCCATAATCA-CTTTTTCAAAATGTTACTGTCAGGAACTATGGTATTGTCTGTAGACTTATCATCGGACAGAGGAAGGTATCCAGTTTTGTTCAATTAAAAATCCTTTACATTTTACAAAACAACAACCTGTGAACCATGATTAGAACCACTGTTGGAGAAATGtggttttaaataaaaagaattctgcTAACATCTTGCTATTGCTAAATGATAATTTTAGTCACAGTTATGTTAGCTTTAAATTCTTATGTTAAAA--ATATTGGTGTTTAGCTAG------AAAATTATttgtaactttaaa-----aacaaaa------tatatgtacTGTGTAttgt

a score=15983
s chr3           159428237 550 + 160039680 TTTCTTTCCTTTGTCCAAGATTGCAATGACACAACTTATT------------------CACAGCCTTGTTTCACAGAGGTATTTCCAACAGAACCAGACTATTTATAGGT-----------------GTTCTTTCATTTATTATTTCATCTATTTATG-TGGAAATCCTCA-------TGAAATGATT-------------AGTCTTCTGATGTCTTTCATACTTATGAAGAAGCCGAAAGCCTAGAATGTTGTACTTTACATGCCAAGATGATA-TAGCAAAGCCCTGGCAAGAGAATGATTGAAGATTCTCACTTTAATTTCATGGCTATTTGTTCCATCCTAGCATTTCATCAAG----------CAAGTAGAAATTACATCACTCTAT-CTTGCTGTTCAGGTAAAAGGGCAGTGATAAATGAGCATATCTACCACCTTTTAATTATAATTAATGACTTTTTTCTTCACATCTGATATGTATTTTACAATATCACCAGAGAAGTTTAATTACCAGCTAAGATGCTAAGATAGATATACATCAGGGCAAAAGGAATCCAGATAAAACTCACAGGAAACATATACTGACATCTTAGCCATTCATCACTGTCACTAC
s HiC_scaffold_1 146693082 604 + 233722169 TTTGTGTCTTTTTCCCAGGACTATACTTACAAAAGTTATTGTCCAGCTCACACCAGGCAACAACTTTGCTCCATAAATACAATACTGACAGAACGGTATTGTTTAGAGTCCCCTGGCTTCAAAAGCCATTTCCCCCTTCATTAATTCATTTCCTCTTGGTACCAACCTTCACCCTGTATGAGCTGATGTGTAACAGGGACAAATAGTCCGATGTGATCCT--CTCCTGAGGAAGCTGTGAGACTGAAAAGCTATACTTCATATACCAGGATGAAGCTGGCCGAGCCCGGGCAAGAGAATGATTGAATGGTCTCAGACTAATTTCATGGCTATTTGTTCCATCTCAGAATCACATCAAGCATAGACCTCCAAGTTGAAATTGCATCTCTCTGTCCTTGCAGCCCAGGT--AAGggcaataa-aaatgaacatagcCCTCTCCCTCTAGTGACAAATAATGGC-TTTTTCTTCACAACGGATGTGTATTTCATAGCATCATCAGAGAAGTCTCATTACcaa-taaaatgatacaatag------ATCAGGACCTAAAGAGTATATATTAAGCTCACAGGAAATAGGCATATGCATCTT-TCCATCCTTCGTGGTAATGAC

a score=20147
s chr3           159454891 1059 + 160039680 ATTTAGGAAAGCAGAA-CTACATGGCGTATAT----TGCATTGTAGTGAGCATAAAAGCAAACAAAACCCTTTCTCAAGGTTCT-GTGATGAAAGAAGCTTCCTGGAA-------AGAGGGTAAAGAA---------------------------------GAAATTTCT--CTGTGAGAGGAAGGGATCGC----------CTAAGTCACCCTCTGATCCTAAATTTGCTCTAGACTATTACTATAGAATATAACAAATATAAATATCATTTAAATTTT-TCCTTTAAGAT-AATATATTCAATGACTTAGGATGAAACTAACTATAT-ATTCAAGCCAATTAAAATG--TGCAGTAATTTAAAAGATGAGTCTTAAAACATGATTCCTTTTAACAGGAGATGAGAAAAATGTTCCTGATGGACACTAATATTTTTCCTAAGGAAGGAGTGGCA---CTTCTCAGGAAACACTGGCACTAATGCTTCCTGCTCTTTAAAAATAACAAAAATGCATAGGA--CTCTCTTCTTTAAGAAATTGATGGTTTATTGTT--GTTTCATTGGAGAAATGTACATATATTAAGTATATATACATATATTCTTTTAAATACTGACATCTGAAATCTATTTTTGT--GTCTTAACAAGAGAAGAAACACCACCATCATGTGGCAAAAGAGATTAA--CTTTTAAAGTTA--CAGATGAAATTTAAATTCATCTG-TAATGCTCTAAATAAATATATATT------------ACTTGCACAAATTCATATG---CTCATTAAATAA--TGCAAATTAGCT-------AAACTGTTGTAGAAT--------------AACACTGTGATTAGCTTCTTCAGTTTATATTTGTTAAACTGATAATTTAACAATTGTTAAACTGATAATTTAACAATTCTTGGCTGGTTGTATGATACTACTAAAAAAAAATAGAATGGAGCAGAAAGCTGGTAAACAATACAGACTTAATTTAGTAGTGAAATGATAGCTACCTGAGATacacacacaaacacacacacacacacacacacacacacacacacacgcaAAGAATTCCAGAAAGAT-----ATAAGTAAAGCTAAGACTTTATCAGTTTAAAGTATAT-GGTATTTCCATAGggcttatttcaattgattccaacagtcctct
s HiC_scaffold_1 146706702 1062 + 233722169 ATTCAGGCAAACAGAAGCTATGCAGCTTCCAAGCTATGCGTTATGTGGAGCATAGAAGCAAACAAGTTCTTTTTCGAGGGGTCTCGCAATGAAAGAGGCTGAAGGGGACCGTTGGAGATGCTTAAGAAACCACAGAGCCATCTGTGCTGCTTGATGCCCAAGAAATCACTGAATGCCAGAAGACGGTGACGCTAGACAACTTCCAACTTGGCTTCTAATCCAAAATCTGCTATAAAAGCTTAC-ACAGAACGCGATCAGTATAAGTGCCTTAAAACTTCTGTTCTTCAAGATCAATATCTACAG---CTTACAAGGCGACAAATAATATTGGTCAACCCAATCGGAGGGAGGGTGGTACTCTGAAAGACAATGCCCAAGACAAGGTTTCCTTCCAGGAGAGGTGGTGGGAATGCTTCTGACATGCACAGATCTGTTTCCTAAAGAAGAAATGGCAATTCTCCTCAGGAAACACTGGCACTGATGTTTCctgctctttaaaaataacataaatgtgtAGGAGTCTTTCTTCTTTATGAAACTAATGTTTTATTGTTAGGTCTCcttggaaaaatata-atttttcaccaATTTA-------------------ACTGGCAGCTGAAATCTGTTTTTTTCCATCTCAACCAGAGAAGCAATACTACCATCATGTGGCAAAAgagattaaattttttaaagtcacccaaaaacaatttaaattcacAAATTAACATTCTACACAAACATACATTCATTTCTGTGTCATTTGGGC-AATCCTCATGCCcctcattaaattattttcaacttAGCCAATATTGAAACAGCAGCAAAATTTCTGTGAAAAAGGAAAACTGTGGTTAGTTTTTCCCTTTGAAAT------GACTGATAA-----------------TGGTGGT-------TTCTTGTTCCCTTGTCCAACAccagtaaaacaaataaaaatata----aaagcccAGAAAAGAAGCAG---CGATCT--CACTGCaatg------------------------------------------caaacaaataaacaagtagGTGTAGAACTTTAGAAAGATAAGCAAGAACTAAAAGCTAGACT-------TTTAAATGTTATAGACACTTTCACAGGCGTT-----AATTGATCCTAACAATCCTCT

a score=8129
s chr3           159495297 1341 + 160039680 TCTGTGCTCCACAG-----CTCTCCTGCAC-CACCCAGACAAGCTGTGCTCGCGTCACAGCGCCTTCCCCTCCGTGTAGCATCATGTGACTCAATGGCGCCGCCAATCAGCTT--CGCTCGGAGATATTCAAATCAGCAGCG---CGGCAGTTGTTT---------CCGACACCAACTCCAGGCCACAGAGGTTCCT----GCTACCGCGCACTTTCCGCAGCCTCTCAGCCCGGCAATGATAGC--ATGGAGCGTCAGGGTGCTCCTCTTGGACCTTACCGGGCCACCAAGCTGGT-AAGAACGTGGAGGAGAGGGACCAGAGACCGAGGTTTTCCGAGGGAT---CCTGGGTGTAAAAAAGTTTCCTGAGGGGATTCAGAGCTACTAGATTCGTGAGCCAGGGATCTGGTATCCCGAGTGAGCCAAGGCGCCTAGATTTCGGAGAAAGGTGCTGAGGGAAAGGTGCTGAGATGCAGCTGCTCCTGTCCGGGTCTTTGATTTGCACTCCTCTCTGGTATTTCTCAGTTTCAGATCC---AAAGTGCTCTA-------CCCCAAAATTGTATCACTTTCTGACTCTGCGAGACAACTCCTCAGATGTCTTCTTTCCCCCTGATTCGCATAATAGTCTTAGCCACTTTTCACTTGTAATCTACAGCCTCTCAGAATTAGAAATTAAAGTTTCAAGTCTGGAAG--CCCAGGCATGACAGCTTGGCTTATTGACCCTATAGAAT-------TTGTGAGTAGCACTAGGAAAGAACTATTCAACCTAAACCCCGAGTACTTTAGTAATCACTTTTAATAGTCACTGGGGCTGCGCATTTGGATTACATTGAGATTCACCTaacctcagtttccacattggtacaatggcacaatacatgcccactttaagagattttctaaaaatattctgtgtatgagaatgtgtgatagtctatagaataacaagcaa------------atTGTCTTCTCA-------CAAATGC---TGGccctactttacc-ttgtgggaactaagtttcaaagaag------gaactctctgaaagccacataaatgatggatggaagaactagaa-AATGTACCACTTTCTGTCAGGGTGATCTTGATA-----TTCTAGTGCTCAACAAGTAGTGGTGGTTATGTTTATCAGTAGAAAGGATGGAATTTAGTTTTGAAATGTACCTTAATGAGGTAGTCCTGTCACATCTTATATGAATTTACCATCTTATATGAAAGTAACATAAGCAACCCCCCACACACAAAAATGTCAAGTA-CTAACAAAAATTTACATAAAATAAGGGTTTTGTTGATTACC---------ACAAGATAGATATTA---------------ATACAAGGATACTGAGGTACAGGGAAGGAAAGAACAAAGATTTATAAACAAAAA---GTAAGACTAAAGTT
s HiC_scaffold_1 146751923 1275 + 233722169 TCTGTGACCCGCAGACGCCCTCACCTGCACTCAGCTGCAGCAGGTCTCCTC------CGGCCCCGCCCCGAC-----GGCATCACATGACCCGGTGGCGCGGCCAATCAGCGCAGCGCTCCGAGGCATTCGAATCAGTCGCGGGCCGGCAGTTGTGCGCAGGCCCGCTGGAGTCGGAGCTGCGTCTCGGGGGGTCCCCAGCGCCGCCATGGACG--CCGCGGC-----------GCGCTGACAGCCCATGGAGAGTCGCGGGGGGCCTCCCGGGCCCTACCGGGCCACCAAGCTGGTAAAGGGCGCGGAACGAGGG---CACGGCCCGGGGCCGACTTAGGGATGGGCCCGGGCACCTGGGGCCGGTGGGAAGGAGCGCGAGGACCCCCGGTATGCGGCTTTGGGGGCCGACATC-----TGTGCCTGGGGTGTGGGGTCCCCGACCGTCACCTCGGGTGTAGGATGCCGA-CTGCAGCTGCTTCC------ATCGCTGGTTT----TCCTCCCCGG--------------AGGGCCGAGAGAGTAGTGGAGAACGGGCTCCAGA---GCATGGGGGTCAGATCGGGC---AGAACTCAGTAGGGGCTT-------CGTTGATTT------------------CTTTT-------------------------ATTAGGCCTTGGAA-TGCAAGGCAGGGAGGACCCAGGCACACCATGATG------TGCCCTTGCAGTGTGGCCTTGCGGTGTGTGGCCTTGCG---GTGCCCAGCGACTTCAGCCCTGAG-------GGACACGCTGCTGCCGGTTA-------TGTG-ACCTAGATTCCCTAAACCTCCGATGAGACTCCGTCTCCCCGTGGGTG------------ATGTTGCCACCCTGAGGGGTGTCCTGGGAG-ACACTG-GGGTGACAGCGT------GTCTATAGAGTAACAAGCAAGGCACCCTCAGGAGTGCCCTCTCAGTGTGAGCACGTGTGGGTAGCCCTACTTTACTAgtgtggaaattgaggctcaaaGAAGTTAAGTGACCTCGCC--AAACCACGTAAACAATAAGTGACTGAGCTAGAAGAAGACAGATATTTCTGGTATGGTGACCTTAACAAGAAGTTCTC-TGCTCAGTaagt--tattaattttgtttatcaATATCAGGAA--GTGTTTATGACTGGAAGGAACCTTAATGAAGTAGTCCTGTCA-ACTTATTAAAAATCGATC-----ACATTAATGTAGTATGAACA---TGCTGAACAAAAAAACATTTGCTAGCCATTAGTACCTTACACAATTGAAATCATTTTATCATTACTTATAAGCCAATTAGATATGTACTGTTGTCCCCTTGTTATAGATAAGGGGGCTGAGGAACAGAGAAG----ACACAAAAGTTTGTAAACAATAAGTGGTAAGGCCACAGCT

a score=29445
s chr3           159497810 841 + 160039680 ATCATTtagatatatgatcttggtcaagttaacag-tctgtgcttctttttccttatatgaaa-gtgagatgatattat------cttataaaactgtGAGATTTATACTTAAAAACTGAACATAAACTTATGTTTATG---TAAAAGATACCAGCATATTAAAAAAAT--CTAATAGTAAATGCTCCATTGACTAAGAATAT---------------TATACT------TCTTTTCATTCTGAACTCTCCTAAGTAATT-GAATGCCCAATGAATATTTAGTAAAGAAAGCCTACTAAAATAAAATACTATCTTGACACTAGAATTAGTAATGAGAAATCTGTGAAGTA-AGATTTTATGTAGCACAGATAAGATGATTTTCCTCAATAGTATTTACAGTATAATTAAGTACCTGTGGAATAAAGAATTTTCTTTCTCTAAAGATTTTCTTCATTCCATTTGGttgttttgagatagggcctcatgtagcccaaactagcctataactggctacatacccATATCAATGAGGTTTCATTTTTGCTATATATAGTTTCTTTTTTTAAAGTATTTT-TCTTCTCTTTGCAGTGGAATGAAGTAACCACATCTTTTCGAGTAGGAATGCCTTTAAGAAAACATAGACAACATTTAAAAAAATATAGCAATTGTTTCACTGCAGTTGAAGCTATAGATTGGCTTTATGATCTGTTAAGAAGTAATAGTAATTTTGGTCCTGAAGTTACAAGACAACAGACTATTCAACTATTGAGAAAATTTCTTAAGAATCATGTGATTGAAGATATCAAAGGTAGATGGGGATCGGAAAGCCTTGATGACAACAATCAACTATTCAGGTACTGAATTGATATATCATTA
s HiC_scaffold_1 146753510 770 + 233722169 ACCACTTAGCTGTGTGAGCTTGGTCAAACTAATGTCTCTGTGGTTGGTTTTCCTTATGTGAGACATGAGGTGATCCTAATACCTACTCACAGAATTGTGGGCGTTAAGGTGAAATGGGGAATATAAAGCTAAATGCTTGGCACAAATGCTACAAGCATATTACTAATACtactagaaataaa---------aaacagaaatatgagaATTTAAACTGGTACACTGCAGTTTCTCTTCCTTCCTAGGTTTCCTACATAATTTGACCAGCCAATTACTGCCT-GTATTAAAATTCTGTTGCTTAAAAATACTACTATAGCACTAAACTTACTAAAACAAAATCAGTGAGATATCAATTTTATGTTGCACAAATGAGATGATTT-CTTCAAGAATTTTTACAATGTAATCAAat----gtgtattaaattatttt-----------------------tgcattt----------------------------------------------------------caaatcagtaaggtttcatttttgtt------------tacttttaacatgttttgtctttcttttgcagTGGAATGAAGTAACCACATCTTTCCGAGCAGGAATGCCCCTGAGAAAACACAggcaacactttaaaaaatacgGAAACTGCTTCACAGCAGGGGAAGCCGTGGATTGGCTTTATGACCTAttaagaaataatagcaattttGGTCCTGAAGTTACGAGGCAACAGACTATTCAACTATtgagaaaatttcttaaaaatcatgTAATTGAAGATATCAAAGGCAGATGGGGATCAGAAAATCTCGATGACAATAATCAGCTATTCAGGTACTGAATGGATGTATAGCTA

a score=47976
s chr3           159514077 3318 + 160039680 acaTAAGTAAATCAGACTTTTTGTATGACTTTAAAAAT------ACTCTAGAAGTTTATTACTTTATCACATCCTATTTAACTCCGTATTATTTTCATATCAGATTTCCTGCAACTTCTCCACTTAAAACTTTTCCACAAAGACATACAGAAATCAAGAAAACCAACACAGAGTACTTTTCCAAAGACAAAGATGGTATTTTTAAATTACGAAACTTATCTCAAAAAACTTCTAAGAAGCGTGGATTACATTTCTCTCAGGTAAAATATTCTTTTATTAACCAATAGTTTAAA-CAGCATTACCATGTGGTTAATAGTAAGATTATTTAAAA-TAAATGATGTTTTAATATTTGAAGCCAATACTGAAATCTCCTAAATTACAAtttttttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacgcaccaaaagagggcgtcagatcctattatggatggttgtgagccaccatgtggttgctatgatttgaacacaggacctttggaagaacaatcagtttcttaactgctgagccctctctccagccccCTAAATTACAATCTTAAGAAtgtatgtgtgtgtgtgtgtgtgtgtgtTAATGTGTTTAGAACCTACAGAAACAGTGTTGAATACAGTAATGAGGTATTCTTAAAAAGGAGTTTTGTA------ATGTAATATTTTGTCAT-TTGTTATTCTTCCTATTTGTGTTAATCTGATTTCTACCACTGTGATGAAATACTTGAAAATCACTCTCAAAGTAGGCAAGTCCAA-----------------------CCTCAGATTCCAAAAATTctttgggtcttatagcaaggcactgca--ctcataataggagcatgtgaaggaggaaactactta-----tggaaatgggaaggtgaaagaaggaaaagggtcctggattggggtgccaacagctccccccgacaacctactgcctgtgatatgattcctttccataaggccttgcctcttaaatgttctgctacctagaagaac----tgggctggacatttagacttctata--tggatggtttgcagcacgtttatgatctaaacaatagcCTAGAATTTTATAACTCTTCAACTCATCTCTGTCACTGTCTTTTCTAAAAACTAAACTATAAAGTAACTAGACACAAAGTTGATTTGTATGTGTTGGGAAAGCTACAAAACTGAAAACTATGTGTCCCATTACTTTTCAGACACTTTGTAACTCAACAGTATACTTTGATTTATACAATTACTAAGTATTaaaaacactgcctcaataaagaaactggagatccatcaagaaagacacccaatgtcaacttcagtcctatacacacatacacacacatacCAAACAAACAAATCTGTGTTAAAAGTGTTCAACATTCCTTTCAGTTTGAGTACAAACTAGAACAAACCAAAGCATTTTTCCCCCTTCAGGAAAATACAGAAAAGATAAATCATGAAAGAATAACCAATGAAGATCTAGAAATTGCACCTGACAACCAAGAAATAAGCCAGGAAGATGTTGAAGAAGTTTGGAGATACGTTATTATGATATAGTAAGACAAAAATAAGCAGTATTTAAGATTCTGAAGTATGTGGATTATTAACTTGATTTTTTTATCCAAATATGCAAATGAATAAAAGTA--TTACTTTTCAAAACTTAGAATTTAAATATGCATTATGATTTTTAATAATTGCTTTTGGTACAGATTTAGTACAGTATAAAGAAAGAAGTTATA----------CCTTTT----------AAGTCATCACTGTAGTTTGAGATTTTTATTGGACTCCTCTCAATTTTGTTGAGTAAGTATATAGTAAAAGTAAATAGTAAATATAATCCTTGAATTGTTTTAAGAGAAAAATAAAGTACTCTTATGTCTTTGTTTGTTGCAAGTCATGTTC---------TTTTCCTCTTATTTTATAAAGAAAACCATTGTTTATACTCTCTTTAGCCTGCAAACCATTTTAAGTTTGCCATCCATAGAAGAACTCTTAAACCCAAACCAAGTAATTCCTCAATATATAATGTACAACATGGCCAACACAAGTAAGCATGGAGTGGTCATACTACAAGACAAATCAGGTAGGTATTTAGAAAAGAATCTGGAATCTTTTCAAACCTAGTAACCAAAGGTGCATTTATAGG-------------TTAGTATAGAAAGTAGAACATTTTC-CTAGG------------------------------ACACATTCATTTAGCAATAATGATGGAATTTTTGGAAGTAAA--TATTATTTATGCTATCACAAAAAAGTATTTAATTGCTTAAATGAATTAAT--ATGACTTTAAAAATATGGCAGTGATAAACATCCAAAATGTAGAC------AATAAAAACTAT--Attaacaacacgtgcgttaagtacctacaatgtgccaaacattttgctaaagatttagtgatgaataag-ctggatatggtgccAACTTAAAATTTGAAGCAAGCCTCAATGGAAGAG-TACCCTGAT-ATTCAGACATAGTTAATTTCAGTTATAAGCTTCACCTAAATCAGTAATATTCATGTAAGATAGTAATAGAACCAAAGCG-GAACTAATGAGAAGTAGTAGAGTAGATAATGATGAGATTTAG--TTTATATCTCAAAAAAAAATCTTCCTAGATAAT---TCTTGATTTTGAGTAGCTGTTTCTTTTAAATATTATAGATAGAATCAAACTCAAGATCTTTATAAATTTTAA--TTCTTGTATTTTAAAATATTGATCTGTCCTGGGCTAATAGCTAAGCTGGTAAGAGCCCTTAGTGCTAAGCAAAATATAAA-----------GCCTAaaaataaa-ataaaac----aaaataaaataCACTATCAT-AAAATGGTATGGCTTAATATACATTCTTTGCATTTTTTTT---TCTAGACGATCTTCCACATTGGGTTTTATCTGCAATgaagtgcctagcaaattgtaagttaaaccaaaccacaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg-----------------------tttgt-gcacatgCATG-CATGTATGTGTGTG-------TTGTGTCAGTCT----------------------GTCCACTTGTATGTCTGTCTGTTTGTTCTATTAATAGTGTTTAAG-AATATTAAAGAAAATATTTAAAATTGTGAGTC-----------AAATGATAGTCAAGTGAAATTTTTTATA-----AGCTCT---TTATTTTCTATGTAAAAGGTTATTTTGTGATTAGAATCTGTCATTTATGGTTCAACTTAAATAAATCATAAACTCATAGTCTCATAGGATTTGGAAGAGTCTTAGTTAAAATCTAAACTGCAGCAATTGCCACAGTGAGGCCCAAAGGTTTAAAGGTGGCAGTTTAGAAGTAAAATAGCATATGTGTAAAAGAAGTTGAATCAGAAATAAAGTT-----GCATACATCCCA
s HiC_scaffold_1 146757391 2974 + 233722169 atataaataaaacaggtttttcatatgattttttaaattaatcagcTATGaaaattgttt--ctaattttaggttatttaattacatattgtcttaaaACCAGGTTTCCTGCAACTTCTCCACTTAAATCACTTCCACGAAGGCATCCAGAGTTGAGAAAAGGCAGCATCGACAGTTTTTCGAAAGACAAagagaatgtttttaaattacgAAACTTGACTCGTAGAACTCCCAAGAAGCATGGCTTACATTTCTCTCAGGTAAAATGTTCTTCAGTTAACCActagtttaaaatataattaccCTGTAGTTAAAAAGAGAGTCATATAAAACTAAATGATCCTTTACTATTTGA-GCCCATACTAAAATACCCCAA---------------------------------------------------------------------------------------------TGGATG-------------------------------------------------------------------------------------------------TAACATTCTAAA-------------------TATGCATGTgcaaattcatttggaacccattgaaacaatgataaaaatgacagaaaaacataCTTGAAAATGGTGTTTGTATGATTTATGTG-TGTTCTGTTAGGCTACTATTCTTCCT-CATGTATT-----GGCTTTTGTCACCATGACAAAAGGCCTGAGGA-CACCTTcaagcaagggaaggtttattttggctcatggttctgcaTCTCGTCAGCTGGCTCCAGTGCTGTAGGACCTGTA-CAAGGTGGAACAGGCTCAT-------GTTTGTGGCAGGggaaactgctcacctcatggcagctggg-GATAAAAGA--GAAGCGGGC--------AGCGTCCAAGCGGC------------CTAACTTCCTGTCATG--------------AGGGCCCCACCTTTTAAAAGTCCATCTCCCCCAAATACCACTACAGGCCAGGTACTAAGCCTTTGACACCTGGATCTTCTGGTG-ATGGTCAAGATCTAAACTGTCAC----AAT---GTAACTCCTCGACTGATCTCTCT------------------------------GCATCTAGTC------------------TTTTATAACAGTGACACAGCTGAAAAGTA------------------------------------CAGTA-------------------------------------------------------------------------GTACTTAATGTGAGCAT--------------------------------------------------AAAGAGTT----------------------------------AAACCAAAGTAATT--CTTTTTTCAGGaaactacagagaaaataaatcatgaaa------tcaaagaagatcaagaaaacttaggagattATAGAGAAATAAGCCAGGAGGATGTCGAAGAAGTTTGGAGATACGTTATTCTGATCTAGTaaga-aaaaacaagcaataaTCAAGTTCCCAAAACATTTAGGTTATT----TGACATTTC-ATCAAAATATGCACATGAATCAGAACAGATTAGTTCTCAAGGTTTAGAATTCAA-TACGTAC-ATGTTTCCTAATAAATATTCTTGTCATAGCTTTAGTActgtaaagataaaatattttcagtatgatttgctttttctttgaattaaagTCATGGCTATAATTTGGAGTCTGTTTTGGA-GCCTTTGACAGTTACAAGATTAGTATGTTGGAAAA-TGATTACTAAGTATTAAGCCTGAGCAGTTTGATTGAAAAGA----ATATTCTGATGGCTTTGTTTGCT---AGTCATGCTCACATTTgcactctatttttattttgtggagaAAAAGTTTGTGT-TCTTCTTTTCAGCCTGCAAACCATTTTGTGTGTACCATCCCTAGAAGAACTCATAAATCCAAACCAAGTAATTCCCCAGTACGTGATGTACAACATGGCCAACACGAGTAAGCGTGGAGTGGTTATACTACAGGACAGATCAGGTTGGTG-CCACAGAAGCAGCTGGGAACTAGTCGAGCTGAGAGACAGACGGTGGCTGCAGTGgagcagagaaagacccagcctAGAAAGGAGATTATTCTCACTGAGAACTGGCAGAGGGTCTGCCGTTCTGTCGTCATAGATGTCTTAAGTAATAACAGTGGAG-----GAATGTTAACTCGGTATTCATGCTGTTAGAAGAAATTATTTAGCTACTAGGATGGATTCATGCATGTTTTTAA----ATGGCAAGATTAAGCATTTCAAGAGTATacagatataataaaaattattggtCACTAACATTTGTGCTGAGGGCTTACTGTGTGCTAGGCA--TTGCT-GAGGTTTAACAGTGAGTAAGACTCAAGTGGGAGGCCTTGTGAAATCATAGGCAAGCCACCCTGGATGTGTTGCCCTACTGACTCGGATCCAGTTGACTTCA--------TCCCAGACGAAATGGCA--------GAGGGGTAG--ACAGAAGCAAAGTGAGAACGAACAGGAAGTCATTgcattaagaaaaatg---tttgGGATTCCTATCT-----GGACATCCCCCGAAACAACTAATCTAGTCTGGGAATGCCTAATTGTTTGGTGGATTGTGGATTAAGTCAAACTGAAGATCTCTTT--TTTTCaagctttttgtattttaaaatacaagccTGACCCTGTCCTGTTG--AAACTAGTAATTTTTAATACTGGTAATATACATACAGATATGCATATATGCACATAATTACATATATAACTGTGAAGTTTTAATAGATAATCATAAAAATTATGTGATTTACtaaacaatgttt-tgttttgtttatatgtaGAAGACCTTCCTCACTGGGTGTTATCTGCCATGAAGTGCCTAGCAAATTGTAAG-TAAAgcaatttattcatttgtttgtttgtttgtctttttgagacagggtctccctatttagtttaggctggccttgggctcactttgtagcccaggctggtcttgaacttgtgttgatcctcctgcctcaacctccctagtgctggtattataggcgttcaccaccatgcctggcagtatAAATTTTTGACAATTTATAAGTAAAAGTcctgataaaatttaaatgtactaTTCTCTTGACGTTTAAGTGAAAGTCTAGTAGACTCGGTTACACATGGAACCCTCAGTTGTTTTTTATACAGAAGGCGATATGATAATTGAAGCTTATCATTTATGGCTTAATTCACATAAATCATACAAGCATAGGCTGGAGAGTTTT---AGGATCTTGGGT---ATCTGCACTGCAGTATTTGTCCCTGTGAGGCCCAGTGAGTCCAC-GTGGCAGCTGGGAGGTGAACTAGCTCGGAAGCAGGAAAGGCTCCCTGGGAAACCAGGCTTCCTAACGTGCACCCCA

a score=94418
s chr3           159520736 3218 + 160039680 TTGTTAACCATATAAGTTTAAACTTAAGTATACTTTT---AATTGTATTTGAGTTGAAATTTATTTTGCCCA---------------------------TTTCTTTTGCCTTCTGCTTCTTAGGGCCAAGAAGTAATGACACCAATAATCTAACTTATGTTGGATTTGAACGTGATGTATTCAAAACAATTGCAGATTATTTTCTAAATCTCCCTGAACCTCTACTTACATTTGAATATTATGAATTATTTGTGAACATTTTGGGTATGTGTGAATTTTACTTAATATTTAAATTTATTCTATTAAAGTCTTTAAGTTTCTTTAAAGTTAAAAG-TCTAAAACCAT-GGTAAACATGAATGTGGTAGGatata--aattattttagattttaataatattataGT------TATACCAGAT---CAAATGGTTCAAATATGC---TTTAACACCACTTGCCCTGAAATCAACGgtcatatatttctatgtagttctgacata---gctccttagagttagccctaatcttacaggagaaaggctcatatccacaaatctacccttacttct-ggtgctggcaacaaataagctccctttgctctctacacttatgctcaactacctaccaattaaaaggtccctttgaacgcctc----tataatttagtaattcactcacaagaccctggaaagtaattatgtttgttactttgttataagaaggatagaattcaggaatagaca-aagagaagtg-----ataagcat--gaaagaaagtaggggtgacatagcctctataacctctcaggaaagacaccctgaacatctgtgtgttcatcaacccag-aactaccttagcttaatcgtttcagaattttacgtaggttttattaactaggtacaattgtgttgctgattaaggttttgttgttgttgttgttgttgtttgttagggtttggtttggttttcttgatattgatctcaatctccatctcccttcccttcccaagaggttgTAAGCAATACAGAT--ATGTGACTAGCCATGAGTTACATTAACACAAACTCATGTATGTGGCAATAGCTACTCTTgaataacaagatttatcactcaggaaattcaaggattttagtagttctataccagtaac-----caagaagagataccaagtataggtataatagt-cttcATGTGCTAGTTTTACCTACTTTTGGATTCAACCAATCCATAATCAAAAATGTTTACTTTTT----AATGTAGTTACTACATAGAACTACCAGGTATTTTTCTTTGTTTAGTtttgttttttgttatcattctctaaataata-------------aatatatacgtagtgcttatcttatgttat-atgaataatctagagattatttaaa-------ataaatgcttaggttatatgtatgtacatggtacaccattttagataagagtcatgaatttgcagattt----gtctatgggcatccctggaaccagtcttcccataaacactgaga-------tatgTGTGCCATTATGTATACAGTTTTTGTATAATTAAGGACTTTTACATACTTGTAAAAGTAAAAACATAC---TTTAAGTGTGTTCTGATTTAATCTTCCCAATTGTGTTGCTAAATTAATTTTTAAATGGTTTATATCACAAATGGAAATACCACTAGTCAGTCTTGCATGTTTATAACTGAATGTTG--CATGTGTCCTATTGAAATGGCTTCCAAATTAAGCAACTGCTATGTGTTCTTTACTAACAGTATATATTATTATAGTAATGCCTTTTTTTTAACTTTACTTTTTTTTTCTGTTTTATTTTTGTCCACTGTCTTGCAGTTGTATCTTAATTTTTGTTTCATTTTCTGGTAGTTGTTTGTGGCTACATCACAGTTTCAGATAGAACAAGTGGAATACATAAAATACAAGATGATCCACGATCTTCAAAAATCCATGATTTAAGCAATTTGAATTCCTTCAAATCAACTGAGTGTCTTCTTCTCAGTCTGCTTTACAAAGACAAAAGCAATGAAGAGTTGGATTCTACTAAAAGACTACAAAGAAATGATCAAGGATTTCAAGAAAGATGTGCCAAGAAAATGCAGCTAGATAATTTAAGAAACAGAAGAGCTAGTGCTAATGACATAATGGGAGGAAGCTGTCATAATTTAATAGGCTTAAGTAATACAAATGCCCTGTCCTCTAACATCAAACCAAGGTGCTCTTCTTTGGAAGGAATTGTAGATAGGCCAGTGAATTCAAGTGAAAAGAAGTCCAGTATCTTCTACCAGTCTGTTCTGAACATAGAAGAACAAAATAGTAAGCAATCGTTAGTGTCTGCACCCAAACAGACACCCCTATTTAATCTTCACTCAGATGAAAATGCTCAGCAGCCACACT---GTGTTGGTTTTAACAGAACCTCTGCTTTGACTGTTCAAGACCAAGAAGAGTTATGTAATGAAAAGTATAAGTCAAAACAGCTTTGTAGATCTCAGAGTTTACTTTTAAGAAGTAGTACAAGACAGAATAGTTGTATCAATAAACCAGTGGCTGAAATTATAATGAAACCAAATGTTGGACAAGGGAGTAC---------------------AAGTGAGCTCGGAGAGTCTAGTACCACAATCAATAAAAGACTGTGCAAAAGCACCATAGAACTTTCAGAGAAATCTTTACCTCCAGCTGCTTCTGTGTTGACTGGCACACAAAGTAAGG---CTGTTTTTGGTGCATGCGATGTTAACTTTTAATGTTTACTAACTCAGCTTTTTATT--------CCTGGCTTTTCTTCTCTGAAATCACTTTG-TTCTTTCTTCGAGAAGAAATTATTGTAAAATGCTTTGGTCATGGCATAACCAACATTTATTCTATACTACTTAAAGCACTTAATTTCTTTTCATTTAATTTCACTTGATCTGTGTCACTTTGTTTT--ATAAGTGAAGTATTTTAATACTTAGAAATAAGTTGC-AAAATAACAGTTTTTATCTTGCTATATTTTAAAGGAATGTAGAAATTTATAATCATAATTGAAAAAATA-CTATTATTTTACCCTTGTTATGTAACTGTATT-CTATTCACTTGAAA---CCTATTTTCATTGATGATTTTTTTTCGGGGTGGGGGTGACTTTGCCTTCTAGGTTTGCTGCAACCTCACTTAGAGAGGGTTGCCATCAATGCTCTACAGTTATGTTGTTTGTTACTTCCCCCACCAAATCGTAGAAAGCTTCAACTCTTAATGCGCATGATTTCTAGAATGAGTCAAAATGTTGATATGCCCAAACTTCATGAACAAATAGGTACAAGATCATTGGTAAG
s HiC_scaffold_1 146762136 3094 + 233722169 TTGTTAACTCCCCATG---AGACGtaagc-tactttttaaaattgtatttaaggtaaaatatattttgcttgggttttttggggtttttttggttttttttttttttgcctttgactTTTTAGGGCCAAGAAGCAATGATGCGTGTCATCCAGCTTACGTTGGCTTTGAGCGAGATGTGTTCAGAACAGTTGCTGATTATTTTCTCCATCTCCCTGAACCTCTACTTACATATGAATATTATGAATTATTTGTGAACATTTTGGGTAtgtatgccttttattt--tattcaaattcatttcgttaacattttcagttttcctAAAATTGGAAAGAGGTAGCACTACAGGTGAATGTGAA-ATGGCTGGCTGTGTCCCTTGTGCTAAAATTCAGTGACACTGTAGTcgctgttctgtcttgttttcacaTGGCTTGGATGCACGGTTCCCACACCATTAGGACCGGCATCTGCAGT---ATTCTGCTCTTTCCTGTTGAAATGCTGACTCCCAGGAGCCAACC--------ACAGCTCAGGGGTTTAGTTCCACCAGGTTGTCCTCAACTCAAGGCGCCAACTGTAAGCCAGGCCCC---------------------------------------AGGGTTCCTGCAGACCCCTCCCCGTTCACTGTAGC----CGCTCAAGGGATTCAGGAGTGAGCTT----TGGTGGCTCTGAT----------CAGTTATCAGGCCCAGCCATGGGAGAAGTGTACACAGAAGCATTTGGAGCGAAGCA-------CAGAGCCTTGGTGTCCTCTC-----------CCCGCTCATCACGGGG--CGTCTACCCAGCAGCTCCCTGGACCTCGATGGTCCA-AGTTCTGCTCAGGTTTCACTCCCCAGGCAC------------------------------------------------------------------------------------------------CTCCCGTCTCAGGCGGGGCTGAGCAGTCCAGGCTAAGCTTGCTGGCCGCACATGACCTGAGCAGCTGCTCAGCTGTGCCCCAA-----------------CAAGAGTTCCCAGCCGGGAG--CCCAAGATTGTAGCGAATCCAGGCCAAGAATTCCCTCAAGGTGC-ACACCAGACACAGATACCTTGGGGTTTCCTGTCTGTGATTTTCATACATGTGAATCCGGC-AGTTGAGGGTcaaaaccatttatttttttaaaaaagttgcaaCTGTATCGAAC-ATGAG---------TATGTacagattttttcc-------cattcttaaaGTGATACTACTTATACTGTATTATAGGGGATCTATTCATACTGTATTATTATAAggaatctagagatgatttaagtgTGAAGGGATATGCCTGGGATACATGTGTTTAT----TATACCATTTTAGATACAAGACTTGTATTTTGGTGTTTCAATACCTATAGGGGGTCCTAGGAC--GATTTCCCATGGTTCCTGGGGATGACAGGATATGTTCTCTTACAT-CATAGTTGTCTTACACCTAAGATATTTCTAGTGCTTACAGAA-CGAGAGcaggtatttttaaatgtattcgcACTCAATCCATCTAATCGGGCTG---AATT---TTTTAAGTTACTTATATCACAAATGGGAAAACCACTCGCCAGTCCTGCACGTTTATAACCAAGTGTTGTGCATGCGTGCTATTTCAGTGGCTTCCAAATTAAGCAGCTTCTATTGATACTATACTAACAATATATACTATT---gtgatgctttattttt----tcactttttt----------gtttttgtccacTGTCACACAGTTGcatcttaatttttgtttcattttctggtaGTTGTGTGTGGCTGCATCACAGTTTCAGATAGACCCAGTGGGACACATAAAATCCAAGACGACCCACAGCCTTCAGAAACCCTTCACCTAACCAGTTCGCATTCCTTCAAGTCCACTGAGTGTCTTCTTCTCAGTCTGCTTCACagagacaaaagcaaagaagACTCAGACTTTCCCGAGAGACTCCAGTTAAGTGATCATGGATTTCAAGAAGGACATGCTAAGAAAATGCAGCTAGTTAACCTAAGAAGCAGAAGAGTCAGGACCAGGGATGGGATGGGAGGAAGCTGTCACAGTCTGACAGGCTTGAGTAGCTCACGTGCTCTATCCGCTAGCATCAAGCCAAGGTGCTCGTCTTTGGAGGGAATTGTAGATACACCGGGCTATTCCTGTGCCAGGGTGTCCAGTGCTTTCCAGCACTCTGTTCTGAGTGCAGTACGACACAAAAGCGAACAGTGTTTAGAGTCAGAGCCCAAACAGGAGTCCCTGCTGGATCTGCATTCAGGGGGAAGGACTCACAAGCCACTCTGCAGTGGCGGCTTCAGAAGAATTTCTGCTTTGACTGTCAGAGACCAAGAGGAGTCTGGTTCTGGGGACTGCAGGCCCCAACCACTTTGCAGGTCTCAAAGTCTGCTGTTAAGGAGTAGCTCAAGACGGAACAGCTATGTAAATACACCCGTGGCGGAAGTCGTCATGAAACCAACTCTTGGACATGGCAGCACAAGGGTGCACAGAGCCATGGAAAGTGAACTCAGGGAGGATTGTGTCACAATCAATAAAAGACTGTGCAAAAGTACTGTAGAACTCTCAGAAAACTCTTTACCTCCAGCTTCTGCTGTATTGACTGGCACACAAAGTAAGGTCATTGCTTTCCGTGCATGCGGTACTAACTTCTAGTGTTCACTAAcgctgcattttgcttttctgcaCTTGGCTTTTCTTCTCCAACACTGCTTTACTTATTTCTTGcaaaagaaattattataaaag--TCTAATCATGACATATCAAAGATTTATTCTATGCC-CTTAAAACACCTGA---CCTTTCTTGTAGTCTCGCTTATTTTAAGTCATTTTGTTTGTAGTGAGTAAAGGATTTTAATACATAGAAATAGGTtgtgaagaaaataatgaaaatctaaCTATGGTTTTGAAGAAAGTGGAAATTTCTAGAAATAGTTAAATGCAGAGGTATTACTTTACACTC-TCACATGATGGCATTGCTGGTCGTGTGAAAGCCGCTGTCGTCACTGATGATTTTCTCCC--------GGTGACTG----CTTCAGGCCTGCTGCAGCCCCACCTGGAGAGGGTCGCCGTCAGTGCGCTGCAgttgtgctgtctgctgcttCCCCCGCCAAACCGTAGGAAGCTCCAGCTCCTCATGCGCATGATGGCCCGCATGAGTGGAAACGTGGACCTGCCCAGACTGCACGACGCCATGGGCACAAGGGCGCTGGTAAG

a score=52170
s chr3           159525532 4012 + 160039680 [encoded data, 4343 characters]
s HiC_scaffold_1 146765888 3739 + 233722169 [encoded data, 4343 characters]

a score=59899
s chr3           159552113 3545 + 160039680 taaagaaggaatttaataac-------tcacttaaggaaatacaggggaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaaaaacagg--------aaaacacatcgaaacaggtgatagaaatgaacaaaaccatactagacctaAAAAGGGAAGTGGACACAATAAAG--AAAACCCAAAGTGAGGCAACGCTGGAGATATAAACCCTAGGAAA---GAAAT----CTGGAACCATAGATGCCAGCATCAGCAA---------CAGAATACAAGAGATGGAAGAGAGAATCTCA----GGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGA--TGAGAATGAAGATTTTCAACTCAAAGGAC-CAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCC-CATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATT-CCACGACAAAACTAAATTCACCCATTATCTCTCCA--CGAATCCAGCCC------TTCAAAGGATAATAACAGAGAAAAACCAAT--ACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAA---------------CAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA-------ATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGA-----CACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGAT---ACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTC--ACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGA----AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATC--AGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAA-----AAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATA-----GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGC---CACTATTACTCTGATACCTAAACCCCA------------GAAAGATCCAACAAAGATAGAGAACTTC----AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG----ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC-----ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCAT-ACCTAAACATGATAAAAG-CAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaa-agaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggag
s HiC_scaffold_1  65294956 3464 + 233722169 TGAAGAGGAAATCAAAGCACAGTAGAATTATTTGTAATAATAAAAGagaacacaatgaaagaaata-agaTGCTCAGTGAGCTCACAGAAaacacaattaaacagaaaatggaCTCAATGATCATAGAGGCTTTATAAAagatactaataaaaagctacctgagctaaataaaacaatataaaacatcaATAACCAGTT---CAGAAAAAATTTAGAGTCCAAGAAAAAGTACC-------AAATAAAATCCAGGAGatcaaaaattacactgaaagcaTAGGCAGGAGAAATGACAAATGTGAGCACAGAGTACT-GAAATAGAAGATGGAG-CTGATGTTGGCGTTGAATTATTCACAtataccttaaaaacaaaaaacatggaaaatgga----gccaacagctgctagat------------gaaaTGCGG-----------AAGACTAAATTAAC---TGGAAGGAGTAAAAATCAGAACGAAG--------TACAAATGGCATCGGAAACCTGCttacagaaataacagaaaaaa------caaGCATACGGAAAAAAATCTCACATGTGAGTATTGAAGgtatatagaaccccaaatagttacaaccagaaacaaaaattctCTATATACACAATATTCAAAACCCTAGAAGCCCAAAAAAAGGACAGAATGTTAAA-GCTGTTAGACAAGAGCAATAAACCACTTATATAGTTATatccattagaattacagcagatttctcaacacaaattttAAAGGCCTGGACAgactgaa-----gtgtttcaagccttaaaagaa-----GTTCCAACCCAGACAGATATATCCTGAAACACAGTTTTTCAGAATTGAAGGGAGAAACAAGGTCTTTCCATAAAAAAAGAGCACTTTAAGAAAGTCATGACAATCAAATCAGACCCAAAAAATTCTCAGGAATATCCTAGAGACAACAAAGTTaacaatgtcaaaaa---------aaaaaaaaaaaaaaaaaaacctataaaaataaatacaccaaGCAAGACGAGAAGTTGactagaatggggaaaaaagggaaccataaacaggaaaataatgcaatgatagCAATAAATCAATAGCTTTCTGTAATAACTCTTAATATGCATGATCTCAACTCTCCAGTCAAAACCCACAGATTGGCACAGTGA------------GACCCAGCAGTATGCTGTATATCAGAAAGTCATTT--------AATCCAAAAAACATtctagactaaaaatcaaatagaaattgtTCTATGCAATGGGAACCCCTAAACAAGCAGAATTTCTTATCCTATT-TCTGAAAAAATGTACTTCAAGGCAAAATTGATTAGAAGAGGCAAAGA-------TTACCACAtattaaggaaacaatttaactggaagagataacaattataaacatatatgcaccaaatactagcACACTCAACTTCAGAAAATAAACACTATTGGA-CTTAGAAGATCTGATATAT-----ACAATTATATTGAAGAACTTCAATACCACACTGACACAAA----CATATCAACTAGATAACAAGTTAACAAAGAAATACCACAGTTAAACTGA---ACATTCT--AACAAATG-ATTTAATAGCTATCTACAGAG--TTTcatcaaacaacatcagaatacatattcttctcagcagtacatgaagTATTCTCTGAAACAGACTACATAATAGCCCATAAAGCATGATTCCATAAATTATGCAGAAGAATCGAAATTATCCAACACGTATTATCTGATTATAgtgcaataaaactagaaatcagtggcaaaagaaagcacagaaattatgcaaatgaatgaaaataaaacaacacactaTTGAAtgatcaatgagtcacagaataaatcaaggaagaaattaggcAGCTTCTAAAATCAAATGTTAATCCAGGTACAACATACCATAACATATTATACACAAAGAAAGCAGTTCCAAGAGGGAATTTTTTAGCTGTTAATGTCTACGTcgcaaaagcaaaatgaatccaaataaataacctcatgATGTACCTCAAggacttataaaaacaacaa---caatccaAATCTAAAGCAAGCACAAGGAACGAAGttataaatatcagagaagaaattaatgaaattgagaataaaaagcaaaac-------agactcagtgaatcaaagaactggttctttgaaagaataaaataaataggcAAATCCTTAGCAAatcatacaaaaaaataaaggtaagac-----------CTAAATCTTAGAAATTAGGA-------ATTGTAACTGATACCACCAAAATCCAAACTAAC------TGCTTTGACAATCTTGAATGCCAG-------CAAATTGGAGAATCCTGAAGAAACGCATAGATTTCTAGATACAAACGAATTACCAAAACTTAACTAATAAGATATAAAGACCCTGGAATAATACAGTCACAGCCAATGAATTA-----AACCATAAATAAGAACATCTATGAACAAATATAAACCCA-GACTA----CGTTTCACACTggattctacaagaacttcagagaagatttaatggcaatattcttcaaactctttaatataACTGAAA-AGAAGGAGTACCCtcaaactcattcttggaagcttGTATTATTAGTATTGTACTACAATACTATTTGTACTGTATTACAAAACCAATCAAGA---AGCAACTCAAaaaggccaatctctttaatggagacagaag-aaaaatccTCAA-GAGATAATAGCTAACAGAATTCAACAACCCATCAAAAAGATCAGATATCATGA-AAAGTAGGCTTTATCTCAGGGGCATAAGAATGGTTTAATGTAc----atcaatcaata--------aatataaacagaatcaaggggaaaaaaaaatcacatgaatatCTT----GACACAGAAATAGCCACATCTTTGACAAAATCCCAAATCTATTCATGATGAAAACCTTCAAACAAACAGGAATAGAAGCAACTTAACcccaatataataaaatccaaaatattacAAACCTACTGCTAATACCATATTAAATGGGTAAATGttgaaagctttctttctaaaatcagaaacaaaacaaggatttTCATTATCACTATTTCTGTTCAATATTGTCCTTggaatactagctagagcaaccaggcaagaaaaagaaacaggaggaaTTTTTACAGGAATaga-gaaatcaaattatca-ttttCACATATGACATGaacctctacatagaagactcaaaataTTGCACCTACAggctcctagaattaataacaaaTTT--GTAATGTAACAGGATAAAAAGt---cacacaaaaatcaacagtatttttatacacCAATGATGAACCCAtgcagaaagaaattaggaaaacaatatgatTCAAAATAGAATCATAAAACTTAAATCACTT--------CCTTAGGCAAGGAAGGGAAATTTATCCACAATGAAAACTAcaacattctgaaaaataaagattGAAGAA-ACATCGGACAATGGAAAGATTTCACCTATTCCTAAATAGGCAGAAGCACTATATTCTAAATGGTTATTATTTCCAAACTGATACATAGGTTTAACACAATCCCATTCAAAATACAGAAGGATTCCTTTTAcaaaagggaagggg

a score=22508
s chr3           159552179 2827 + 160039680 ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaaaaacaggaaaacacatcgaaacaggtgatagaaatgaacaaaacca------tactagacctaAA--AAGGGAAGT------GGACACAATAAAGAAAACCCAAAGTGAGGCA---ACGCTGGAGATATAAACCCTAGGAAAGAAATCTGGAACCATAGA--TGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATC--TCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGA----AAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCC-AAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGT--AAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAG-ATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACA--GAATGCCAACTTTAACAACAAAAA-TAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAA-ACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGA----CACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACA-----AATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAG----TTTAATG---AAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAA--AGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAG--GAAGCAAATTCA-CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACT-CAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGAC------CAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAA--------------------------------------------------------------------------------------CCA------AATCCAAG-----------------------------------------------------------------------------------------------AACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGAT-CAGGAATTCAAGGCCCA
s HiC_scaffold_1  89593870 2780 + 233722169 ttagaaaaaaataacagaatatccCCAAAAATGTATAACACTTCA-----AAACTTGATTCCATATATAATTAAttcctaaaatt--ataaaatcaattaaGTTTTATAGCTAGATTAAGGAAGACATTGCAGGATACAA-AAAGCAAATTCAATATCAAGCAGAAATCCTGGAAATGAAAACCTCAAGAAGCCagattaaaaaaactaaattgaAAGTCTTGGCAAtagacaaaataaatcaaaagaaaagataaacggGATTTAGTGGATACAGTAGA--ACATTCATTTAGTAATCAtggaaaaagaactaaaaatg---aaagattaagaataataacaaatataaaatattttttaaggttAGTGGCCTTGAGGTAC---------------------ATGTAGGTATAATACT-AAAGCATAAGCATCTATC--CATTGAAGCCATTGCAGAAAAGTTTCCAAACTTAAGAAATGAGATGGCT-----CATTTAA-AGGCATTTGCTTCTCCCAAATATATGtaagcagaagaaaaatatcaCC--ATATTTCACTGTTAAAatgtcagaaattcaaaacaaaga-aaaacattgaaagaAGTTCAAAGGCACTAACTCA-TCAAATTATCAAGTCAA---CATCGTAAAAATAGCAGGTTTATCAACAGAAAACCTAATATTTGAGCTAGCTCAGCATGATGTACTTCAAGCCCTTAAAGATAATTATTGTCAACTTA---TTTAAAATGATGCCAGACTGT--ATTTCAAaagtaaggggaaa--aaaatgttgaGCAAAGAAACT---------CATGA-----CAAGTAAGCCAGCattccagaaaatatttaaatatcacaaaGACAATGAGTATAAGA--------CCATGTAAAGTATAAatttaatt-----ggaaaaataaa----gacaaaaatgagaacAAGGAATTAAATGTTAGAGaacaaaaaatgacaagaatTAGCATATGACATTCAGTAATACA-ATAAATGTAAAAGGCATTAA-TCTCCAATTAAAAGATCAAGATTGACACTTTGGATAAAAAACACAAGACCCTCTTATAGGTTAATTGCAAGAAACAAATTTCTTCTGCAAAAACATACACAAACTGAAagggaaaagatggaaaatgaaCCTCAAAGAA---GATCTG--GAAACAAGCAGGGTTGACTATACTTATATCTGA-AAcgtagaattaaaacaaaaatcttt---aagtGACAAAGAATGCCACTACACATT-GTAAAAGGTACAACTCACcaaggaaaa---acaattttaacCATAGGAAC-ACAAATGCCTGCACATGttatttcataaaacaatttCACTTGAAAAGA----CAAACACAT--------CCCCAAAAATATAGTAGGGGACTTCAACAC--TATTTTTATAagt----aggtcaactagacaaaatatcaacaaagaaacataAGAGTTAG-----ACTCTGATGCAGCCACAGGGAAGTTAATAGATGTCTACAGAATGTTTTATTCAACAATATCAGAACGCATATTCTTGTCAGCTTCCCATGGAACTTTCTCAAAAATAGATCACAT--------------------------------------TTTAAA-----------GTTCTATTGCATCACAatggaatgaaactagaaattattaggaaaaaaattacatgaa----------tatGCTGAAATTGAGTTAAA---------ATGATACATTTGT-----AAATAACCAACAGACAACTCAAGtaatcagaagaaaaattttaacgtcaaaaattaaatgacaaa----tcAAACACATGTCATAATCTGAAGTAGATATTCTAAGACAAATGTTTACAGCTGTGAGTACCTACAAAA--------GCAAGAGTGGTTCCCA--------AAAAATAACCTAATGGTactaaagagaaaaaccaaaacaaactaaaCCCAAAAACagtagaataaaagggaaaattaagATTAGagcatatataaatgaaattgaaactttaaaaaatag--aaaggatccgttaatca--gagttggttctttgaaaagataaacaagattGACAAAGCCTTAGTCAAAATTACTAAAAGagac-----------tcaaataaataaaattagagattGAAA---------------AACTCCTGAA---ATCTAGATGATCATTAgagattatttgaaaaatttatctttcaaTAAATCAG--AAATGTGGAAGAAATGAACATGATC----------------TACTAAAATTGAACAAGTaagatatataaaat-taaacagatcAATATAAATCAATGAATTTGATGTGGTAATACAATTTCTATCAACTAAGATAAGTTGAAGATCTAATGGCTTTACAGTTGAATTCAACCTATCTTTTGAG--------AATACCAATAATCCTCAAACTTTCTTGTAtaataaaagtgaa---tttttttccaaatttattctaTACAACGAGAGTTACCCTAATACTGATACCACATAGTCgtttaacaacaacaaacaacaaaaagctaCAGGCAATGTCATTgatgaatataaatgaaaaaatactagGTAACATTCTTGCCaaaagttgtttttgttgttgttgttgttgttgtttttgttgttgttttgagataaggtcttactatgttattcagactggccttgaactcattatgtagtccaggctgccttgaactagCAGAAATTCTCCTCCTTCAGCCTTTTGAGTGTTGTTTGAGGCATGTCCCACCACCCCCGGCcccttctaaaatattttaccaaCACATTAAAAAGATCACACACCTTGATCAAGTTGGTTTCATTCCAAGGATGTAAAGATACTTCAACATATGTaacttaataaatgtaatacagcacaaaaaaa----taaaacc--aagtcaTATGATATCCTTAATAGATGGAAAAAGAATCTTTGACAAAAGCAAGCATAgcttcataaaaa-------gaaaaggtataaGGACCTGAAGCCCA

a score=103515
s chr3           159552230 4673 + 160039680 [encoded data, 5214 characters]
s HiC_scaffold_1 195236716 5000 + 233722169 [encoded data, 5214 characters]

a score=58504
s chr3           159552234 4800 + 160039680 [encoded data, 5019 characters]
s HiC_scaffold_1  64167706 4431 + 233722169 [encoded data, 5019 characters]

a score=10425
s chr3           159552235 1122 + 160039680 gaaaacacatcgaaacaggtgatagaaatgaacaaaaccatactagacctaAA-------------AAGGGAAGTGGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATATAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATA---GAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAA---AGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAAT--GAAGATTTT--------CAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGT-TATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTA-TTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAAT-------------AACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAG------------AAGATAATCCCTCAACAAAACTAAAAGAAGA--CAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA-ATGGTCTGAAGAAACAAGCTGGAGTAGCCAT
s HiC_scaffold_1 129057359 1086 + 233722169 GATGACACAT--AAGAAGCTAGCAGAGCTAAACAAAGTAATGCAAAGCATGAATGACCAGTTTACCAAAGAAATTGGAGTTTATGAAAAGGTACCAAACggaaatcaag--gaaacaacaaATTCTGTTGAAAGTGTAGGCAGCAGAAGTGATCAGTATGAG-GACAGTGTGTCAGAAAGAGAAGATAG---TGCTGATATAGGTGACCATATActcaaagatactttaaaaacaacaagagcacATAGAAAATGGACACTACAGAttctagat---------------------gatgcaa--agaagactaatctgAGACTAACTGgtattagtgaaaaatcagaaggctGTATAAATGGCATTTTACAAAACCCGG-------TTTACAGAAATAACAGCAGGAAATTTCCCAAATCTGGGAAAAGAATTAAACGTACAGGTAAGAGAAGTGTATAGAACCACAAATAGTCATAGTCATAAAATAATTTCTCCCTGACACATCATAGAAAAAAACCCTGAAGTCC------AACACAGAACA--------AGTTAGGGAAAAACAATGAATCACTTATAATGGGAAACTCATTAGAATTATAGCACCCTTCTCAGCAAACCCTA--AAGGCCAGgcgagcttggagtaaagtatttgaAGCCATTGAG-GAAAACAACATCCACCCCGGACTGATGTGCCCTAtgaaactatcttttaaaactcatagtgaaa-taaagtattttcatGACAGAGAGAACCTTAAGAAATTCATAACCTCAAAATCACTGCTCCAAAAGGTTATTGtggatatcctagaaagagacaagtTAATAATGTCACAGAATCTACTATAAAGAATACACCAGGCAGGTTGAGTTAAGttaa------gaagaagggaaaaggagaatcagcaacaggaaaatcatac----------------aatgacaggaataagCCAATAGCTTTCAGTGATAACTTTC--TATGAATGGTTTCAATGGTT---TCAGAAGCCAAAGattgaagaaatca----agaaacaaaatccaacagtatggTATATA-AATAGATTTGACCctgaaagaaattcatagacta----aaatt--aAGACtcaaaaacagtattccatgcaacatgaACCTAA-AAATAAGTAGGAGTTGAcat

a score=4762
s chr3           159552303 546 + 160039680 AATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATATAAACCCTAGGAAAG-AAATCTGGAACCATAGATGCCAGCATCAGC--AACAGAATACAA------GAGATGGAAGAGAGAATCTCAGGTGCAGAAG-ATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAA-----------------------------------------------------------AATTATTGA----------------------------------------------------------------------------------------------------------AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA---------TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAG-CCAGAAGAGC
s HiC_scaffold_1 139027740 694 + 233722169 aacaaaaagaacccaACAGGAATC----TTGGAAATGAAAAGCTCAGTAAGTTAAATTAAGAAC--TCAATGGAATGACTAGTCAAACAGAAGATGGAATTCTGAGCTTGAAGACAAAGT------TGATGAATTATCATACAAGGaacat----------aataaagaaaa----agatgtcAGAGGAAT-------AAAATGTCTAAGAACTCCGGGACACTATTAAAAGACCAAACCTATGAAAGTTTGCTGTAGAAGAGAGTGGAGATGTGCAGATTAAAGGCACAGAAAATCTACTCAATCAGGGATAGGGCCTTGGCTCAGGGTTAAAGCTCCTGTGTAGCACTGTAAGGGCCAGGGTTCAATTCTTAGCAAAGGTAAGAGGGAGGAGGGATGCAGGGAAGGAGGgatgggaaaggaggaggagaagaaaaggaggaaggaaaggatgggtggatgggttCTGTAAAACAACACCAGAAAACTTCCCGAACCTTGGGAAAGATACAGACATCCA-GTACAGGAGGCATTTAGAACCTCAAATAAGCATGACCAGAAAAAACTCTCCCCACATCACTTTACAGTTAAAATGTCAAGAGTACAGAATAAGGGGAAGAGTCCTGGAAAATCCAGGACAGCAACAGCAAA---TCACTTGTGCTATGACAGGGCACCTATCAGAGTAACTACAGGGTCCCCTGCAGAGACTCTTAATGACCAGGAGGGC

a score=96040
s chr3           159552383 4556 + 160039680 [encoded data, 4670 characters]
s HiC_scaffold_1  64793136 4446 + 233722169 [encoded data, 4670 characters]

a score=7815
s chr3           159552386 881 + 160039680 ACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACA-------------------TCCAGGAAATCCAGGAC-ACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATC---TTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAG-AACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAA----CTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGAT-AATCCCTCA-ACAAAACTAAAAGAAGACAGCCACAAGAA-CAGAATG------CCAACTTTAACAACAAA---------AATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT
s HiC_scaffold_1 229213731 863 + 233722169 acaaaaaaaaaaaaaaaaaaaaaaaaa---------aggaagaatcctGTGAGAACA---GCATCAGAATTAGAAGACAGTGACCATGTATGCAAATGTACgttaaaaacaagagaacatgagAAGCAAGTCCAACAGCTGCTGGATGACAGAAACAAGACCAATCTAACATTAACTGGGaat-------aataaaa-----caacacaaagcat----AAACATCCTGTTTACACacataataacagaaaattttatgAGTATGGGGAAAGAATTTATCGTACAGATGAGTGAGGGCAAAAA----CCAAATATTTATAGTCAGAAAAAAGGTTTATCTTCAGCACATTCTTGGCAAAATCCTAGGAGT-CCAACAAAGGACAGGATCTTAAAAG-ATTTAGGGAATAGTAACAGCTCATTTATAAAGATAAACCTATTAGAATTACAGCACATTTCCAAAGAGAAACCATAATGGCCAGAAGGGCTTGCAGAGAAGTGTTTTAAaccctaagagaaaaaaaaattacaaatcacATTGATATTCTCTGCAAAGatatctttcaa-------------------------atttgatgaCAA---CAAACACATTAGACAATTTAggaccaaaccagcactccaaaacaTTCTGA---AGGGTGTCTTAGAGAAGGACAGGCTTGCAATGCCAAAACGTTTAGTGAAATGAATGTGTCAGATAGGGGTCAGTTAAGGTGACTGCATGAAGCAGAAGGAGCCGAACAGACTCAGCACCAGGTACCAGTGCAGTGACAGGGCTCAGTCAACACATTGCAGGACTAAGTCTCAAAATGAATGGTCCCAACTCCCCACTCACAAGACACGGATCAGTATACTCAACCAAAACCCAAAACTTAACAATGTGTTGAATGCAAGAACTACATTT

a score=31754
s chr3           159552450 2699 + 160039680 AACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAAT--GAAGATTTTCAACTCAAA-GGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGA-ACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCT-ATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACA--GAATGCCAACTTTAACAACAAA----------AATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAA-CAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAG---ACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCG--TGGAAACAGAAACTAAACAGGGACA------CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACC----ATATA--ATTGGTCACAAAACAGGGCCCAACA-------------------------GATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGC-CTAAGACTGATCTTCAATAACAA---CATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGA---AATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTC-----------------ACTAAAGGG---------------CACAG-----GGACAG-------------------------------------------CATCCTAATTAACAAAATCAGAAATGAAA----------------------AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACT-GGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT--------------CACTAACCA----------------------------------AATCCAAGA------ACACATT----------------------------------------------------AAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCC---CTACCTT-----TTCAACA-TAGTACTTGA
s HiC_scaffold_1 174536991 2710 + 233722169 aaaagacaaaaaaaaaaaaaaaaaaaaaaaaat-----------ggatccaACAGGTGC--TACATGGTGTGAAAACTAATCTAAACTTAACTGGAactagtgaaaaatcagaaggt----aGCACAAATGGTGTAACGAACCTATTTATAGGAGTAGCagtagaaaattttccaaatacagggaaaaaattaaacacagagaaaaggaaggtATACAGAGAACCCAAACAGTCACAATCAGAAAATAACTCCAT---GGCACATCAT--CCAAGACAACAGA----------------AGATTCTTAAAAGGTGTCAGAGAAAA----CACAAcatttataaagggaaaaatcatCAGAACTATACCAGACTTCTCCGCACAAGCCTTAAAGGCAAGGAGTGCTTACA-----GTGTTGCAAGCACTGAAAGCAAACAATGCCCAATCCA------TATATACTGGAAAACTATCTGtcaaaattgatataaaaataaagtctttCAGTGATGAAGACCAAGAAATTCAGGA-----CCACTAAACCAGAACTCCAAAAAAC--TTCTTAAGGAaatctagaaagagacaatgaagccaacaatgCAAAAAAGCCTAATAGAATGACTACACCAAGTAAGCTGAACAATTCAGCAGGGATAAGGGGTGTGA----TAGCAACAGGGTAATAATGCAATCATAGGAATAAGTCAATCCCTTTCAGTAATAACccc--atgtaaatggtctcaactcctcaattaaaagacacagattgacagactagataaaaaaaataaagcccaaTGGTATGCTATTCACAAgagac--atttaatttaaaaagttaatagacT--------GTGtcaaagaacacaaaacaatacTCTGTGCACCAAGACCCTGGAAACAAGA-GTGGCAGCTAccctattttcagacaatgtaCACTGCAAGCCAAAACTCATCAGAAGTGGT---GAAGGTCACCACATAATGGCGAAAGGAATATTcactaggaaaaaaataacaattacaaACATATGTGCACCAAACGCCAGCAcatccaacttcataaaacaaacaatacTGAACATAAAAAGATCAGAAGAACATCAACACAACTACAATGGG-GACCTCATTACTGCA------------AACAAACCAActagaccaaaaaacaaaacaatgtcaaAATTTCAGTCAAACTGC-----ATCTTTGAACAAATG----------AGATTTATAG-------------------------TGTACCACCCAGTCAGGAACACatgaaactttctccaaaacagacccaCCATAAAGCATGGCCCAAAAGGCATGGCCCAAAACACAGCCCATAAaggatatttaaataatataaaagagtCAAAATTATCATGTGCATAttatcacagtgcaatgaaactataaattacctgtgaaagaaattacagaaattatGTAAAA---------ACGTGGA--CTCAACAATACACTCTTAGATAATCAATaggtcatgaaaaaaaaaaaaaaagacgaaatTA----CTTTC--------------------ACTATAACACACCAGAACCTATGGGGGA--GCAAAAGCATTCCTAAGAGGGAGATCTATAGCTGTGAatgctcacatcagaaaaacagagcaagctcaaataa--------------------------ctAAGGAAAGAACAATTCGAATTCA----AAGCTCGTATaaggaaagaaattctaaagattaatgcagaaatgaatgaaattgtgTCTAAACTAATTt-----agagtcaatgaatcaaagagctagttctcaggaaaaaaaaaaaag---gagaatccCTGTGCTAATCCCCACTCCCACAGTGTGGTACCAAGGGGTCAAACTCAtgtcctcacacttgccaggcaggtgcttaaaccattgagctaaatcccaggccccctgTGCTAGTCTTaccaaacaacaagaacaaaaaagaaataacctatatcaatgcaattagaagaTGAAAGCACTATAGACATTGCTGAAACCCAGAAGATTATTAGtaattactttgaaaacttgtactcTAAGAAATTCGGAAAACccaaaagaaatggagagattcctagatataaaTGAATTAGCAAAACTGAACTGAGATCTAA--AAACCTTTAA-CAATCTGGTGacagacaatgaaattgaaac---cataaATA------------AGAAAAGCCCAGTACTGGATGGATTTATTGTTGATTTCTAAAAAACTTC--AGAAAGatctaacaccaatactcctcaaactctttaatgaaactgaaaggaaaggaagacaacCAAACTTGTTCCTCAAGTTCCTTGTTTCCTTGGTTCCAAAATCACACAAGGAct--------atag---------------cctctttaatgaacaCTGATGTAAAGATCCTTAGCAAaacactggaaaacagaatgtaaCAAACCATTAAAAAGATCACAACTGACTGATCTTCTGTAGTAGTCCAAGACTTTAAACTCACTGGAAGGCATAAAACTGTTTTTATATAAACAATGCTaattgacaaaaaagaaaaaaaaaatcacatattatgCCCAAGTAGGCTTCATTATAGGGATGCAAAGACAGTTCAACATACGGCAATCAATATATGTG---------------------AAGAACAAAAATCAGATGACCATCtcaacagacagacaaaaagc-CGTGACAAAATCTAACATCCATTAACGATAAAAACCCTTACGTAAACAGGTAGAACAGGccattatctcaatttgataaaatccatttatgacaaaacaGTGGCCAACATTATATT-AATGTTGA-AAACTGAACGCTTTCCAtccaaaatcaggaataagacaagaatgtctactatcaccaGTCTACTTTAGTACTTAAACATTAGTACTTGA

a score=18794
s chr3           159552457 1192 + 160039680 AAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-------GAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGA--TAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAA--ACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAA-----------AAACCAATA---CAAGGACAG---GAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCA-ACTTTAACAACAAA-----------AATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGA------------------------------ACTCACAATT-CTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA--CAGAAGTTATGAAA
s HiC_scaffold_1  67576299 1192 + 233722169 AGACAAAATAGTGAATAacaataaag---aactcaaagaagctaagaagaaaaatagacaataaGAA----AAGACTAtgca-acagctgctagatgatagCACAGAT------------GAATTCACTAACATGCTTACagaaatcatggaagaaaatttctcaaatgtaaggaaagagttt------aaaatacaagtaactgaca---tttataaaacattgaaCAATTATGATAAAAAGAAGCTCACCACAGCATATTCT-----------------TACTAAGCAAaaaaccagaattttaaaaatggtgagAGGAAAA---CATATCATATATAAAGGTATACCAAACAGacttacagcagacttctcaatgcaAAC-ACTAAAGCCAGTAGATCTTGGAGTTAAGTATTTCAAGAATTAAGAACAAATAACTTCTAACCTAGACTAATCTGCCCAACAAAGCCATTCTtcaaaatacatggagaaataagatatttccacaaaAAAGGACCAGGTTGGATGAT-ATATGAGTGCTAAATCAGCTCT---Aaggaaaatacttaagaatattctcaacagaaacaataagtcagacacagctaaaatcaca---gaaagaaagcAGTAAGGTCAATgataaacagcaacaaaaaaatccgg--aaaagaaaaacaaaccatacACGAACCACAAATCAAAGAAGGCAATGACAGTAAATAACCAATACATCTCAGTAATATCTCTCAATATTAATGACCTCAACTATCCAATTAAAAGACAT--ATGGACACACTGGACCATAAAACTGAATCCAATAGTCTGCTGTGTTCAACAAACTcatctaaccaaaaaaaaaattcatagcttAAATATTAAAGGATAAGAAACAACATTTCATGTATCAGGATCCTGAAAATAAGCAGGGTAAGCAATTCTACTATCAGATGCGGTAAATGTCAAGctaaaactgattagaagagacaaagaaggtctcTCTATACTAGTtgagggaacaatccaagaaaaAGAGGtaaacatatatgtttataaacattttttataaacAGTTGATAAACATATATGCCTTGAATACTGGTGCacttatatttataaaacaaaaactgctgaaattaaaaaattaaataaacactaACATAGTCATAgtaggagattttttta---aatttttatttaagga---------gaaaaagaaaaaaaacagaaaaagggtacaagttatgcagaatttcagaaa

a score=82591
s chr3           159552469 4379 + 160039680 [encoded data, 4546 characters]
s HiC_scaffold_1  91695044 4298 + 233722169 [encoded data, 4546 characters]

a score=4966
s chr3           159552500 229 + 160039680 AGGAAATCCAGGACACAATGAGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAAC-ATCAAA
s HiC_scaffold_1  59226996 225 + 233722169 aggaaatt-gggaTACCATAACATGAACAAATACCAGTGCTTTCAGAATACTTGATGGTGAAGAG---AAAATTAATGGTGTAAAAGGC-TGTTCAATAAAGTAATAACAGGAAACTTCCCGAATATTGAGAAAGATGTGGACATCTTTGTATAGGAGGTTTACAGAATCCCAAGCAGACAAGATCAGGAAAGCGCTTCACCACAGCATATTCTAGACAAAACTATCAAA

a score=27212
s chr3           159552520 3061 + 160039680 AGAAGACCAAACCTACGCATACTAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATC-----CAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAG--AAAAAACAAGA--AGAT-AATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA------ATAACAGGAAGCAACAATTACTTTTCCTTAAT-ACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGAC---ATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCT-GGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACT----CATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCA-ATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAA---CAGAAGT-----TATGAAACAAATG----GACCTGACAGATAT-----CTACAGAACATTTTATCC--------TAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA---AGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAG--CAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGAC--CTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAA-GGTACTCTACCCAACTCATTTTATGAAGCCACTATTA-CTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG-TTAG---ATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG---TTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT--AGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatacct-tggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
s HiC_scaffold_1  81644246 2697 + 233722169 AGGAAGATAAACCTATGACTACTTgtagt---taaaaattaaaagataaaattttaaaagtttatgg-----tTTACAGAAAGCATAACAAAAATCTTTCCAAATATAGTAAGTGGG-------------TAAGTGGAGCACACTGAAtattaaatacaatgaa---aaaaatcaatttcccaGGCTAAATCAT--TCAAAATACCCTATGTGC--AACAAATAGACATTACAAGGtatcataaaaggaaaat----aatgaatttttaaagtaaacccATTAGGATCATGAAAGATTGATGAAAACAAACCGTAAATCTCAGGAGTGGGTGGAATGAAATGCCCCA-ACCCTAAAATAACACATCTTCCAACTCATACTAGCATTCCTG--CAAATTATCTTCCAAAACTGATGAAGACATGAGGACATTCCATGACTGAACACAGTGAGT----------TACACGAACAACAAACAGCACTCCAAACTACT--------------CCTAGATAGAGACAGTGATGCCAACATAGCCAAAGAGTCAGATGAGATGAATACATCAAACAGGGTAA--GCAGTTCAACAAAAAGGAAGTATCTTTATGTGAACAACACAGTATGGTATCACTGGAATAACTGAGTAGATTTCAGTGATGACTTTTTAAGAGTA----CCTCAGTTCTTCAATTAGAGGACTGTATCAATTAGTGGACTACATCAAAAACCAGCAGGTAATTGTATGTTACATTTAAGATACTCttaattaagaaagaaatttgtaGAA--TAAAAACCAAGGACTCAGGATACAACTTTCCATGTACCGTGACTCCAAAAGCATGTAAGTTTAAAGCTTTTATTCTCAGATAG--TGATATATCAAGCTAAATCTgaacaaagggggaaaaaaagacattgcatATTGGGACTACTAAGTTATAA-----------AAAATAACAGTGGTAGACATATGTGTACCAAACA------------------------GCATTGTACTAAACTTCATGAAACAAG---CACTCCTGATCATAAGAG-------------------------ATCAGATGAACAT----------CAACAACTAGATA-----------AAATTAATCACAAAAATCTCAATGTTGAACCAGTGCTTTGACCTAACTGATTTTAATGCTACAGAGTATTCTATGCAATAAGATTAAAACACAA---CATACAGTCTTCTCAGGAGGTCAGTGGAacttc---aaaatagaccacatagtaGGCTATAAACC----TTTATTTAGTACAAAATGTTGAAAATCACCCCATG-ATGCTATCAGATAATAGCTCACTAAAAccagaaatcaatggcaaaagaaacgtC----------CATACACCTGTAA-TTGAAACACACAATCCA----GAGAACTCAGTACATCAccgaagaaatcaagaaaataaatattacctGGAATAAAATGACAATGCCTTTGCAATATG---GAACCTAT-----------AAagtagtcctaagaggaaaatttaaaaacataattgctCCTATTACAAACAAATTagtaagactgaaaa--aaaaaactgataatgtatcatcaaaggctagaagacaacaataGTCCAAA-----CTAAATTCAGCACAAGGTGGGCAATCATAAagattggagcagaaattaacaGAATTAAGAT--GAAAACTAATGCAAAGAATGAAACAa--------ctagttctttgaaagactaaattgAATAGATCAACATTTAAGTAAACTTacccatg-----------------------aagaaaat-----------------------------------aaaacatccaCGTCACCAC-----------------------------------------------ACATAGTGGA----------GACTG---------------------TCAGAATCAC-----------------------------------AATAGAGATA-------AAACCCTACCAACTAAGCAGAGCACACTCCTTGGAAGATTCACCACTGAACTGTACAAGATGTCTTCAGAGAGGATATAGCATTAGTACTGTTCAAAATGaccaatgaaatggaaagggaacagTACTC--CCAAACTCATTTATGGAAGCTATCATTAACTCTGATGCAAAACCCAGACAAAAGTCCAACTAAAGAAGAAGACTACAGAC-AGTCTCATTAAGGTACACAG--GGAAAAACATTCCACAAGAGggtggcaaatagaatgcaac------------taATCATCTAAC----------AGCTTTGACCCTAAGGG-GCAAGGATGACTCTgtatgcaaaa--taataaatgcaattgAAGACATAGACAGAAGCAAGACATCAAACAACATCATCATGTCAATTAGtcaatgtacaaatatt-tttgagaaaatccaacattcattcataataaaaaaaatcctgcatAAAATAGTTACAGAATGACC----TTTAAGTTGATAAAATTGATTTATGACTAACTCCCAGGCAACATCATATTAAACTGGGAAAAGCTAATAGATGTTTCTTTAATGTGAGAGAGAAGACCAGGATATTTACTATCACCCTACTTCTTCAAATCAGTATCCAAAACATTGCCCAGAGCATTTaggaaagacaaataaataaaagcattatgtgcaggaaaggaagaattcatATTATCCTTATTTGAGGAAGACATGGTCCATTACATAGAAGT--CCCAAAAttttccaccaaaagactcctagaattaat---caaattcagcaatgtaacagGATGTAAAATCACTGTACAACAATCAATAACATTCTAGCATACCAATCACGAACACATTGAGAAATAAATTAGGAAGACGATGCCACTCACAat-gcatcaagaaaaattaaatacttaagaagTGAGCTTCTCTA---GAGTGAGAAACATGTGCAATAAAAGTTATGCCTTTATGACAAAAGAGGTCAAAGaaca--tcagaaagtggaaagacatcccgtGATCCAGGATAGTCAGAAACAACATTGTCAGaattgtgat

a score=8834
s chr3           159552569 311 + 160039680 AACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGA-------------AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAA
s HiC_scaffold_1  87509165 311 + 233722169 aaattagaagacagaCCAAAAACTCTAAAAAATTTATTGACTGAACTCACAGCAGAAAACTTTCTAAGTCTAGGGAAAGAATTCAGTATTCAAATATAAGAAGCATATAGAA-TCCAAATACCTACGATTAGGAAAGAACCTCCCC----------ATAATCACAATTTcagaaatttaacaaaatgagAGAATACTAAACGCTGTTAGAGAGAAGCAGTAAATTACTTATAAAGGCAAGCCTATTAGAATTCTAGTGGGTTTGTCAGCACAAATCCTAAAGGCCAGAGGAACACAG--AGCAGTTTTTCAAGGCCTAAAAGAA

a score=30824
s chr3           159552570 2469 + 160039680 ACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAA----ACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAAC-------------CACACCCTAGAAAAA-----ACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTA-----------------------------------------------------------------------------------------------------TCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACA--CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC-TTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAG---GAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAG--TGGAAACAA--------GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGA--CATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGG-ACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAG---ACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGAT--CATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAA
s HiC_scaffold_1 116834065 2369 + 233722169 ATTCAAAGG-TCATAAAACATATTCAC-----TTAT--AAGAAGCTTTTCCAAAGCTAGGTAAATAACTCAATATTCAAGTACAAGTAGCACACAGAACCTAAAATAGCCACAACCAGAAAAGGACCACTCCATGATATATCATAAACA-AATTCTAAAtatcc--aacaaaga-aaaatacaaaaagttgtTACATAAAAAGAGCAG------CAAAAGGACAAGATAACCATAATAACACTAGACTTCTCAGGACAAATCTCAAAGACCAGGAGACCAAGGAGCAAAGTTTTTCAAGCCCCACCC-CCCAAAAGT--CAATAGAGACTTCTCTGTTCTACAAAACTTGccttcaaaagaaacagaaaagtaaagaTTTTACAAGACAAGGAATATCAAG---AAGAAATATATGACCACTAAACATACAAT---AGAGAAAATAGTTAACAGAATCCTTGACAATGACAGGGATGTCACCAGTACCACAAATCCTAAAGCAATGTGTACATGTAATTGGGAGAGtaattaaacaaaaggaaaaaaaacaaaagaattggc-----ATTGGAAAAAATAACATAATGACATTCAAGAAACACCTTA---TAATAACTTTCAATATCAATACT-GAAACTtccaaatcaaaagaaacacactggaaGATAGGGT-CAAAAAGAAAAGCCAGCTATATATTGCCTATAAAATGCACTGCTCCcaaagaaactcacagatta----atAGTAAAAGGACAAAAAATGATACTCTATGAAACTGGAGCATGAAAGCAAGCAGGAATAGCTTATCTTATTTCGGAACAA--CAAGCTTCAAGCCAAAACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAA------------------CTTCACAG---------------------AACAAAAACT-------------------GCTGTACATATAAGG---------------AAAAACATATCAATA----------------------------CAATTACAGTGAGAAA-TTCAATAACCTACTCTCAAAACTAG-CAggtcaacaagacaaaaaattagcaaaactTATCAGTTAAAC-----AATATCactaaacaaatggacttaacagggGTCCACAG--TGTTTCATCTAACAGtgacaaaatacacatttttctgagCGGCATTCAGGATTCTTTCCAAAACAGATTATATCTTTGGTTATTAACCATGCTAAAATAATCACAAAAGGATTGATGTAATCCCCTACCTATTATTATATCATAGTG-----AAGTTATAAATTAACAGCAATAGAAACTATATAAA---AACAT---------GATTAAACAATACATTActgaataatcaatggatcacagaagaattcaaaaaa-----taagaacattCCTAGAATCAAGTAACAATGGAAGCACAACATGCAAAATtatatacaaaacaataaaagcggTTCT--GAGAGAAGTTTATAGCTCTGAATGTACACATTACAACACCTGAGTGatcccaaataaataacttagTAGTATATCCCAATGACCTAAAAATTAAAGAGTGATCCAAAT---CCCAAAAtctatagaaggaaaaaaattataaag------------atgaacCAAACATGAATATAATTAATACTAAAAAATAGTACAAAGGATCAATGACTCAGAaatttggttctttaaaaaaataagtaagattGACAAACC-TTAGTCAATCTTACCAAGAGA---GGGGGAAAAACTCTTATCAATGgaagtataaatgaaaaaataaaatcatgagtaAAATCACTGGA---ATCCAGATGATTacaaaaaaattactttgaaacttgtactccaataaattgaagaatctagaaaaaatggagaaattctTAACAAACATATGACCTATCGAAATtgaaacaaaag-atataaaaactctGAATAGTCTAGTAACAGGCAATAGATTACGA-CAGTAATAAAAACTCTACCAACAGAGAAAAGCTCAGGACCTAATGGATTTTCTACAGAATTCTACCAGAACATCAAAGAAGATTTTATGCCTCTACTTCTCAAACCTTTTAATGAAACTGAGAGAAAAGG-AGTACGCCAAACTCATTCTTTGAAACTAGCACTATCCTGATG-CTAAACTATCAAAGAActtaatgaaaa-ggaaaactacagCCAACCACCTTC-ATTACGATTTTCAAATGGAAAATCTTCAACAATATacttgcaaacagaatgcaacaaatcattataA--------TATCATGACCCAGTTAGCTTCACTCTAGGGATACAAAGAGAGTttaacatatgtaagtc---------aatgtATAATATAAATAGAAGCAAGGTCAAAAGTCAGAGAATGACATGTAGCTCTAGGgacaaaaa--atcttaaaaaatctaatatccattcatgat-----ttttaaaaa-----------------ccctg-cTGAAAATAGTAAAAGATGTCTATAATAAA

a score=21254
s chr3           159552574 1547 + 160039680 AAAGGACCAGCAAACATCTTCAACAAAATTATTG-AAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAG--AATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTT-------------------------------------------------ATACAGACACT---------------------------------------------------------------------AAGAGAACAAAAA----------------TTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGG-AGAAACCAAAGTA-TTCCACGA----------CAAAA---CTAAATTCACCCA-----TTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCA-ATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATA---ATCCCTCAACAAAACTA---AAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAA-----------------AATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGC-------TGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGG-AGACTTCAACACACCACTTTCATCAATGG-------------ACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGA------AAGCCAACA-------TTCACG------------------TGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAA---ACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAAT
s HiC_scaffold_1  55628357 1716 + 233722169 AAAGAggcataaaatttatttactgaaataatagcaaaaaaactTTTTGAAGGTAGGGAAATAATTCACTATGTAAATATGAGGTATCTA-AAACCCCAAAATAGCTAGAGCTAGAACAT---CTGCTCTTGACACTtcctaatcaaaattccaga--aatttaagGAAATCagcaaatattaaaagctgctaaagAAAAGTAGCAAGATACTTATAAAAGCAAGCTTATTAAAATTAtgacagatttctcagcacaaatttTAAAGGCCAAGGGAGCTTAGAATGAAGTTTTCAAGCCGTAAAAGAAAGCAGTTGTCCAGGAaggggtataactcagtggtacagaacCTGTCTGGTAAGTGGAAGGTCCTGCGTTCTATTTGCagtacaaaaagcaaaacaaagcaaatcaagcaagcaagcaaacaaacaaacaaataaaaacgcTTGTCAGGCTAAGCTACTCTAGCCCACAAAATT---AACCTCCAAAACTGACAGAAAATAAAGCACTTTCATGGACCTTTGTCCCAAAGGTCCCAAAGAATCCCAAAGAACTACATGCCCACTAaaccagaatttcagaaaata----tataaagGATTCATACACAGGGAGACCATCAGCACCAAAGAATCTCCCAGAATGTATACAACTGTCTGGAAGAGTAGTTAAATAGAAAAG----GAGGGCAAAACCCTGAC----ACAGTAAGCATTGGAAAAATGCTGGAATGATAGTACCCAGTAAATACCTTAC---AATAATTCTCAGTGTCAGTGATCTTAGCTCCACAGTCAACAGACTGAGACTAGCAGATTGgatcaaaaatcaaaatgcaaccatatacacacacatatgtacagtAGATACActttattcaaaaggaaaataatagagtAATTGTGGAAGGCTGGAAAATGATACTCTATGCATCTGGGGCAATAAAGCAAGCAGGAGGAGCTATCTTATTTTCAGACACAACAAGCTTTAAGCTAAAACTTATTAAAGAC-ACAACGATGGATACTACATACTGGTAAAGGGAACAGTTCAAC-AGAAGAGATGATAACAGTAAATATCTGAACTCTAAATGTTGGTATGACCAATGTCATTA-----ACACTACTGGACCGCAAATGACAGATAGACACCAGTACAACCATAGTGGGTGGATTTCAGTACACTA-----ACCAATAGATGAAAAGTTAACACAGGTCAAGTAGATGAAAAGTTAACGAGGAAATATCAGAGTTTAATCATACCATTAAGTAAGTGGACTTGACAGAAATCTACAGAGTGTTTTATCCAACAACAGAATG--------------CAG-----CACGTGGACTTTTGCTAAATAGAACATACGTTAGGCCATAAAGCATGCCCAAATACATACCAAATAATGAAGA--ATCGCATGAATTCTATTGGATCACAATGGAGTAAGAgaga-aatcaatggaaaaacaaacaacaaacaaaacaaaacaacaataaaactcCACACAGACATTACACAAACACTGGAGATTAAACAATATGTTACCAAATAACCAATGGATCATAGCAGAAgtcagggaagaaataaaaaagattctaGGATCAATTGACAATGGAAGCACAATATG-CAAAACATAAGGGACTCAGTGAAACAG--TCTAAGTGGGAAGGTTATGGTCCTGAATGCACCCGTTAAAAAATT-----AAGC-CACcctaaataaataacataatgacACCTGCAgcttttacaaaacaaaagaacccaAT

a score=26697
s chr3           159552574 1663 + 160039680 AAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAA--GCCTACAGAACTCCAAATAGACTGG--ACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAA-----AACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAG-----AAAAACCAATACA--AGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAA----TTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACG---TTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAA---GTTATGAA--ACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATA---TAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAA--GAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATT---AACCAAACGAGGAGTTGGTTCTTTGAGAA
s HiC_scaffold_1 102291805 1557 + 233722169 AATGGcatagaaaacataaacagtaaaataatagtggagaattaaaaaaatcttgc-AAATAAATG-------ATATACAGGGACtggatttaaaatgcaaaataagcaTATAGCCAGAAAAGACTCTCTTCACAACATGTCATGGTTAAACTGACAAAAATTCGGAACTAGAAAAGAACACTAAAAGCTGCAAGGGATAAATGCCAAATGGTTTACAATTGCAAATTCCTCAGAATAGGTGCAAATTTCTCA--ATAAACTCTAAAGGCCAGGAGTGCTTCAAATCATGAATTTTGAGCCCTGAAA-----AAAATTACTAC----ATTACtataacctgcaaaactatccttcaaaattgcaggaaaaataaacatcttcTAAGATAAGCATAAACTAAAAGGATTCATTA-----CTGCTAAATCAGTTTTGCAAA----ACTTACTGAGTTTTGCAAAACTTACTCAGGAGAGCATGAA------------------AAGGAGTAAATCTT--------ATTAAAAGA-----GTCAATAAATCAGAAT-CAAAC---AATCAATGAAATAACAGGGAGCAATACATACCATTCC-----------------AACTGGTCTTAATTTGCCATGTAAAAGACATAGATGAGTGGATTGGAT-TAAAAATTAAACTCTGCTGTATGTTACCCACAAGAAACATACATCACTGGCAAATACATACCAaatctgaaagtcaaaagattaaaaaaaaaagctattctaTGCAAATGGAATCTAAGACCAGGCAGGATTAGCTGCACTCATATGTGATAAAGTAGACTTCCAGCTACAA----TTGGAAGAGATTAAGAGGACCACTACATGCTGGTAATGGGAACAATCCACCAAGCAGATATagtgattataaatatata-------aacagcaGCACacccaattttataaaacaaacactgctCAACATGAAGGAGCAGAAGACTGCA----ATATAACAATAGTGAG----TTCAACACTTCATTCTCACAAACAGGC-TAtc-------taaaaaatcagcaaagaaacaattgTGCTAAACAACTTTGCTATAAAGTATATATGGGCTTAACAGACATGCAAATAATATGCCATCTAATGACAGTAGATTACACTTTCCT-TCATCAGTTTATGGAACAGTATCCAAAACAGGTGATACTTTAAAGGGT---AAAACAGGtcttaataaatacaaaaa-ataaataatgtct--tGTATCTTATCAGATTACAACGGT-----------------TAGTAAGAGAAACTACAGAAATCCTACAGACCC-TACAgattaaataattcacttttgaatgATCAGTGAGTCACTGAAGGAGTTGAGGGGG---TTGAAAACTTCTGAAAATCAAGTAAAAATGGAATCACATTGTGCCAGAAGCTGTGGGTTACAGTGTAAACAATTTTAAGAGGAAAACTTATGGCTATGAGTGCCTGCATCAGGAATTCAGAGAGATCTCAAGTAAATAAGCTAATGCTGCATCTCAAggttttagaaaaacaagaaaaaaaaaaaaacaaatttaaaaccagaagggaagaaataataaaaatcagagctgaaATCAACGACTTAGAGTCTGAAAGAACAGTGCAAAGGATCATGAATca------gatttgtttgtttgaaaa

a score=45929
s chr3           159552582 4355 + 160039680 [encoded data, 4793 characters]
s HiC_scaffold_1  48707941 4271 + 233722169 [encoded data, 4793 characters]

a score=52697
s chr3           159552585 2813 + 160039680 AAACATCTTCAACAAAATTA-------TTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCA-----------------GAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAA----------CTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAA-----------GGATAATA---ACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAA-CAAAACTAAAAGAAGACAGCCACAAG---AACAGAATGCCAACTTTAACAACAAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT--CAGGGAAAAAGAC--AGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCA------AGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATG-CAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCATCAA-TGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAA---CTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCA-CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGC--------TAGACTCACTAAAGGGCACAGGGACAGCATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA----TCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAA-AATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 128206417 2911 + 233722169 AAACCTTGTTAACAGGTTTACTTTTGTTTacaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtc-aactccaattagccatgattaaaacaaagaaacaagaagagaaaaaacaccTTACACTGAGGCATATAATTGTCAggattccaaaaattcaacataggaaaataacattaaaaagtattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGGAAAggttgcagtgaagtatttcaagccctgaaagaacaTACCCCCCAGCACAGGTTGATATAATCTGtgaaactttccttcaaaattggtggagaaacaagatacttccatgacaaagaacacctggttgaaattca---------tgaccaccaagccaacactCCAAAAACATTCTGAAGACTAATATACAAAGAGAACAAAGACTCCAATTTCATGAGCCCCA-------------AGAGATTTAATCCATcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGAGAAATTAGATGACAGAAATAAGTTAACACACATCCTTCATAATCACCACTGTTAGtggactcaattcaccaatcaaaagaaacagattggcagaatggctCAGGAAACAAGATCCAGggttggagatacagctcagtggcacagcgcctactTAGCAAGATCAAGCTCATTAGTTCcttgcccagtaccaaaaacaaaagaaaagagaaacaagatccaacaatatgcggCATACAAGAAATATGTTTAACATGGAAAGATACTTATACATTAAC----AGTCAAAGTgtggaaaacaatgctccatgggACAGcaa----cctg--gaaaaaagcagggccagctattctatttgcagtcCAACTGga-ttcaagccaaaactgatcaagcCA--CAAAGCAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataacaatcataaatatgtatgcccCCCAGGACCAGAGCAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTACTGCCACAAAATGGGCAGATC-----------AACTAGACGACAAATCAGAAAAAGAACTGAGTCAAACTTTTGAACACATGGACTTAGTAGTTGTCTACAGAGTTTTCCGCCCCACCActtcataatacacattcttctccaaTCCTcaagttttgttttccaaaataacCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaagaaactgaaatcattCCATGCATATTAGCAGACCCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAATGTCC-TAcgaatatggaaattaaataacatccttgtgaacaaccagtggatcacagataaaattaaagaacaaattagcaAGTTTCTACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaag--agcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccatacagagaatgaatgaattaaagagGTAGTTCTT--GGAAGATGAAGTAAAACAGACAACCTCTTAGCAAacattgtaaaattttaaaaaggaa-----acaaagtcttagattcatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATCCCTATGTC-ATATGAATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAATGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgactAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGAACTACCTAATGCTGCCACTCCTCAAACTCTAGTGAAGTCGAAAGGTAATCAGTACTC--CCTaagtcatccctggaagcaagcattac-ctgtTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAATCTACCTAATGAGCATAGACAGAAGAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACCAGgtaggattcatcctagggatgcagggaGAGCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAACCAAGGATAAAAACCACTCAATCATCTCATTAAGCACAGAAAAATCATCAGTTAAATGCCAACACCCCTTCAAGAGAAAAACTGTACAGAATATCCAACTATATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatccaTTTTAGTAGCATAGCTGGGTACGAAATCAACACACAAATATCAACAGCATGCCTATACAAATGtaacaaactcagtgagagagaaattaaggaaac

a score=77012
s chr3           159552585 3900 + 160039680 [encoded data, 4274 characters]
s HiC_scaffold_1 135385634 3983 + 233722169 [encoded data, 4274 characters]

a score=56122
s chr3           159552596 4271 + 160039680 [encoded data, 4738 characters]
s HiC_scaffold_1  70016344 4318 + 233722169 [encoded data, 4738 characters]

a score=37370
s chr3           159552608 2926 + 160039680 AAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAA--GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAA--AAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAA-----CTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCA---------AAGGATAAT---AACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACA----AGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT---CAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTC-ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAAC-----------AAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGG-TCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTT-----CTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAA--AAAAGGAAGCAAATTCAC--CTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAA------------------ACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCA-TTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGA--------------------------------------------------------------------------------------------------GTAGACAAGGCT--------------------------------------------------------------------------------------GCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaaga----------tctcagaagatggaaagat
s HiC_scaffold_1 171883955 2733 + 233722169 aaaaaaactttccaaatatggaGAAAGAG--TCTAACAAACAGATAACTGAGACACATAGAACCCCAAAAAGCTACAATCAGAAAAGGACCTCTCCGTGACACAGCATAGGCAAAATCCCAGATGTCCAAAACAAGGAGAGAATCTTAAAAGTGGTAAGAGAAAGGCAATAAATCACTTGTAAAactaaacccattagaattacagcag----------------caTTAAAGCCAGAAGAGAATGGAATGAAAtgttccaagccctaaaagaaaaaacaacttccaacccagactgatatatcctgaaaaactatcttctA-GAAGTATGAAGTAATGAGATACCTTCATGATAAAAGCCACCTAAAGAAACTCATGATTGcc-----aaactagcactccaaaatTTCTCAAGGATATCTTAGACACAAGGAAGCTA--GCAATGTCAAATGGTCCAACCAAATGACTACAGCATACAGAGTGAGCTTTTAAGTAGAATGGAATGAAAGGGCTTGagcaatagga----------aaataaagaaatgaaaggaggaaGTCAATATCTTTCAATAACATCTCTCAGTGTAAATGGTCTAAATTCCC----AACCAGATACagattggcaaaatggatcaagaaatagaatccaatAGTATGATATatgcaagaaacatatttaacccaAAATAAAGTCACAGATTA---AAAAGCacaaggatagaaaacaattatttcagtcagtgagaaattaaaaaatgcagAAGTAGCTATactattttcagacaaaataaatttcaagccaaaactgattagAAAA---------GGTCACAACATACTGGTTAAGAGAACAgttcaataaaaagag---aaaattattaacATATATGTGTAAAATAATAGCACACTCAGctttataaaacaagtactactagacataaaagatca-gataaacatcaacacCATTATAGAAGGGAGCCTAAAAACTCAATCATGACGAATTggcagatc-----------aactagaccaaaattcagcaaaagaaataaaaacgcTCAACCAAACCCTTCCAAAATTGGCTTAATAAacatctacagagtgttccatgcaaaaac---agaatacatattcttctcagaaa--CATGAAATTTTCCCC-AAATAGAAAACATACTCATCTCATAAAGGCATACTTAAGTATTCATAAGGAgtcaaaattattccatgcatac-aTCAGGTCATAGT-GCATAAAACTAGAATGCAGtgccaaaagaaaccacagaaa-ttagcaaatgcatggaaattaaataacacactcaaGTACTCAGTG-------GGTCAGaggagaaatcaaggaagaaatatgAAAGCTACTAGAAGTAAACAATTATGCCATTCCAACACACAAGAACTT-TGGGACAAAATGAGAGCACTTAtaagagggaaatgtatagctatgaatccccacatcaggaaaac--agtgaactgaaataaataacataatggtACATcacaaggtcctagaaaaacaaaagcattcaaatccaaagctaaaacaaaaaaa----aggaaattataaatatcagagcagaaattaataaaatggagactgaaagaaaaacacaaagaaccaACGAATTGAAGAGCTgcttcttggaaagaataaacaaaataaaccaactaTTAGTCAATCTTaccaaaaa-----------------caataaacaaa--caagaagaagaaaagatcaaaagtaatgcaatttgaaaaaattttaaatgataaactCACAATGGACACTACCAAAttct-----aaaagatt---------aaaaatggagATTTTAGAATAAATGAATAGGTTCT----CAGATAACAGA-------------------------------------------------------------------AATTAT---------------CAAAAATGAAccaaggccaga--gatttagctcagcagcccagcagg--------------------------------------------------------------------------------tgtgaagtcatgagttc----------------------------acaGAG------------------------------------------------CGCagtaaa-------------------------tcattaaaaagatcatacatcaaaACCAACAAGGGTTTCTCCCAG--------GGATGATTCAACAgac--aaattaataaatgcaatGTGTCACATAGACAGAAGCAAA--------------AATTGTGCCAATACGTGCAGAAAAAATACTTTGACAAAATGCAACA---ATTCATGGTAAAag-tctgaagaaaataggtatagaatgATCTTTTCTGAAGCTGGTAAAAGCCATTTATAACAAACCTTCTGCCAACATCGTATTgaatgg-gaaaaactgaaagctttccctctaaagcCAGGAACACagccaagcgtggtggcacacgcctagaATGCcagtacatgggaggctgaggtaggaggttcactgtgtgttcaaggccagtgtgggaaACCCTGTgaagtcaaggccagtctggactacacagcgagaccctatcttaaaaaaagtataaaataaagtgagataaaataaaatatcaggaaCACAACACAACAGTCCACTGTCACCATTCCTGTTCAGTATAGTattagaaacattagccagaccaattaggcaacaggaagaaataaaaggg-tacgtacaagaaaa-aagaaataaaattatcattattttcagataacaTGAGCGTCTACAT-AGAAAACCAAAAAATTCCAC---------TCCAAAATTAATATCC---------AAAGCAGCAGGATACGAAATCAACATACAAGCATTAATG---TTCCTATGCACCAATAATGAATTCACTtagaaagaaactagaaaaacaatgCCATTTGAAGtattatcaagaaaaattaaa--------caggaaCTAATCTAAGACAGTGAAAGTCCTTTACAATGAAAACTCC---TATGTAAAGGGAGATAGGGGGAAAAAATGGCGGCTtcctaggaagctggatagat

a score=27855
s chr3           159552616 1971 + 160039680 TTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATT-CCACGACAA------------AACTAAATTCAC--CCATTAT-----CTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGAT-------AATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG--TCTGAA-GAAACAAGCTGGAGTAGCCATTTTAATATCG----------------------GATAAAA--------------------------------------TCGACTTCC-----------------------AACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCAC-ACAATAATAGTGGGAGACTTCAACACAC-CACTTTCATCAATGGACAGATCG--TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGG----------------------------------------------GCCCA------------------------------------------------ACAGATACAAAAATA---------TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA-AGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAG------CTCTAGAAAAAAAAGGAAG-----------------CAAATTCACCTAAGAGGAG-------------TAGAC---------------------------------------GGCAGGAA--------------------------------------------------------------ATAATCAA-------------------------ACTCGGGGGTGAAATCAACCAAGTGGAAAC----AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAAT---AGAAGTAGTTATTAAT-AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG
s HiC_scaffold_1 159881341 2293 + 233722169 ttcccaagtcaaaaaaaaaaaaaaaaaggaaaga---aagaaattaattgaACCCCAACAACAGTG-ACCAAAGAAGAACTCTCTAT-GCCATATTGTTCTCTAAGTACCAGGAATTCATCACAGGGACAAAGTCTTAAAAGCTGTTAGCAAAAGGCAACAAATCATATATAAAGGTAAACACATTAGA-CTACAGCAGATTTTTCAACATAAACCTTAAGGGTCAGGAGGAGTTGGAGTGAAATCTTTCAACCCCTAAAAGATAACAATTTCCAAATCTGA--ATTAT-----GCAAAATGTTCCTt---cagaaatgaataaag-aaagtatttccatgacaaggaacacatctaaaaaaaattcatgaccatcataacagcatttaaaaaattc------tcaagtgTAAcctagaaagaaataatgaagccAG--CAATACTCATAagtcaaaaagaatgaatacatttGGTGGGATgagtaaagaagg--aaaaggaaaaaataaggagATCAGCAGAAGGACTGTAATGG----gatgacaggaataagtcagtacctttcagtaataactctcaatgtgaatAGCCTCcattccccaatcaaaagacacaggttgccaga-----------aacaaaacccaacaacacGCACTATACAAGGAATgcaattaacattaaaaattcatAGATGA----AAAATCAAAGCTTGGAAAGTGACACTCTAAgcaatggaaacctgaacaaaaAAAGCAGGATCAGCTGTCCTAGTATCAAAATTGTTTTCAAGTCAAAAGTGATAAGAAGacccagagcctgcctggcaagagtgaggtcctgagttcgactccaggtacaaaaaaaaatattttaagaaacaaaagtgatcagaagagacaaagaaggtcactacatattggttaagggaacaagTCAATGGAAAGaggtaacaattataaacatatatgcaccaa-taCCGGCATGTTCAACTTCACAAAACAggt----atagacatgaaaaaatcagataaacaccaAGACAACTGTAATAGAGGACTTTGATActttcactgtcacaaatagacaaatcaactggaaa---aaattcagcaaagaaatatcatagTTGAACCAAATCTTCAAATAAATGGACTTAACTG----CTAtatagtgttccatccaacaacaatagaatatacattcttagcAGCAGCATGTGgggctttctccaaaatagaccacatagtaGCGCATAAAGCATGCTTTAAATGcctgcaaaagaatcaaaattaaagggctggggatttagctcagtggcataagtgcctgccttgcaagcaggcaatcgtgagtttgatggtaccgataaaaaaaaaaaaaaagaatcagaattatCCCGTGTATATTATCAGATtctagtgcaatgaaactagaaatcattggcaaaggaaaccacaaaaactatgcaagtatgtggaaattaaacaataacttcTCGAATAATCAATGAGTCATAGGTGCAATTAAGGAATAAATTAAGACAGTTCCTACAATCAAACAATAATGTCAGTATGATGCTCTAAAACCTATGAGACACAAGGAAACCAGTCCTAAGTGGGAAGTTTATAGCAGTGAATGCCCACATAAGAGAAAC---AGtaagttcaaataaataacctaaataAATACCCTAATGAtacacctcaaaaaaaaaaaaaaaaaaaaaaaaagagcaatccaaagccaaggaaaaggaaaattataaagagcCAGACTTggaggtacatgcctgtaatcccagcacttgaggctgaggcaggaagatcgttgcaagttcgagaccagcctgggctacaaagtgagctcgaggccggtctgaactgcatagtgaagaccttgtctcaaaaagaaaaaaagactcacaggaaaaattaatgaaatggaaactaaaaagaaaaaaaatacaaagaatcagtgaatcaaagagttgattctttgaaataat----aaagtagacaaacccttagccaatcttaccaaaTAATGAAAG------ACTCAAAAccatacaattagaaatgaaaaaggtgaaataacaaTCAATTCTGCCAAAATTCACAAGATAACTGGTAACTAGTTGGAGAACCCATACtctattaaaatggaaaatttagaagaaatgggTAGATTCTTAGATACATGGGAACCACCAAAGCTGAACCgaaaagatgtaaaaatcctaaataatccaatcttagtaaatgaaattgaagaagtaatttttaataaaactatcaagtaagaaaagcccaggtcctgacagattcattgctgaattttacaaggACTTCAGAG

a score=62813
s chr3           159552627 3371 + 160039680 AAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGA--CAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT----------------------AATAACAGAGAA------------AAACCAA-------------------------------------TACAAGGACAGGAACCACACCCT--------------------AGAAAAAACAAGAAGATAATCCCTCAA----CAAAACTA--------------AAAGAAGACAGCCACAAGAAC---AGAATGCCAACTTTAACAACAAAAA-------TAACAG-----GAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTC---CAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAAT-------------------------TCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAA----------------CAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCT-------------CTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA-CCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAG-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTT-AGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAA-CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGG----------------------------------------------------------------------------------------------------GATACAAATTGGAAAA------------------GAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATA-----------------------------------------------------------------------------------------------------------------------------------AACtcaaacaagt--------------------caatg--------------------------------------------------------gcctttctctataca---------------aagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttgg-cgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgca--------aattcatctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtac-----------------------------------tggtat-------------agagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaa---------gacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttg
s HiC_scaffold_1 133193494 3824 + 233722169 AAAGAAAAAGGGGTTGTCACACAGATAATTGGCC-ATATAGCTCCAgttagccatgat---aaaaaaattacagcaaaaCATGTAAAAGTCATGATTCCAGAAACTCAAAATAAGATCAtaat--taaaagttgttagagaaaagaaacaaatcacctacaaaggaaagcccatcagaatcacagctaacTTCTCACAAG---CCCTCAAATT---AAGGacttgaagtaaaatatt-taaagccctaaaggaaaacaacctttcaacccagattgatgtaacctataaaactatctttcaaaattgatggagaaataagatacttctatgaaaaGAATATCTGAGTAAATT-TTtggccaccaaaccagcactctaaaATGTTCTCACGCatgttctagaaagagataacaaagaatTACAACTCATAAGGCCaaggctttagctcagtggcccaagcacctacctggcaagtgcaaggtcatgagtttgatctctgctaccaaaaaaaagaaaaaaaaaaaaaaagaatacaactcCTTGAATcccaagacaatgaatgcaattggcaaggcaaacaaataaaaggaagaaaaaataagagagctaacaacagaaaaatatcatGACAATGACtgaataagtcaatacatatcagttataaccactaatgttaatgatctcaattcatcaatcaaaagaaaca--ttggcagaatggatcaagaagcaagatgcaacAATGTGCTGCATAAAGGAAACacattttacttaaaaaagaaatgcatagac--AGAATCAAAGAGTGGGAAACAATAGTCCATGccacaagaacccagaaaaaagcagaagtagctattctatttgcagacaaagtggatttcatcCAAGTCAGAGT----AAGAGAGACAAAGGG---CACTACATCCTTATGAAAGa-------atctaagaggaagagataacatatatatatatatatatatatatatatatatatatatacagcaaATACTAATGCATCCAACtacatataaaaaatattaatggacacgaaaaatcaaataaacactaatacaattatattggGGTACTTC--CATACCTCCTGCCACAA---GTAGATCATCTAGACAAAAAGTTAACAATGTAATATTAGAACAGAACctaacttttgaacaaatggacttggtagatacctacagagtgttccaccctacaacatcagaatacacattcttctcagctacacacgGGATGTTCTGCAAAACTGTCCACATACTATCTCATAGAACATaactaagtaaatgaaaaggaattgaaatt-ccccatgcatattatcagaccatagtgcaacaaaattggaaattgatagtaaaagaaaccaaaagaactTCATAAACTGATGGAAATTAAAAGTggcatattaaaaataatatccttctgaacaaccagtgggtcacagatgaaattaaagacaacattag----TTTCTACAagtaaatgataatgccagtgcAACATATCAGGACTTATGGGAcagaatgaaagcagtccta-gagTGAAATTTTTAGCGGTGAGCACTCATGTCACAAAAAATGAGCAagctcaaacaaa-------acaaaacactttaatGTTGCACCTTGAGCttctagaaagaaaagaa--caagtcaagccca---------acaaaagaaaattataaagatcagagcaaaaattaatgcaactgagactaagaaaacaatacaaagaatcaatgaatcaaagagtt----ctttgaaagattaaataaaattgataaaacccttagctaaccttatcaaaaaacgAAAG------ATGCAAATccat----ttaggaatgaaaaagacGAAATCACATCAGATCCTGCAGGAATCCAGAAGACCATCTATCCTTACTTCaagaacctgtactctaataagatgtaaaatgcagaagaaatggatagattcctagatatatatgagttg----agctaaatcaagaagatataaaatttctaaataaaccaatatcagtcaatgaaattgaagatgtaattaaaaaaccTATCAAAAAATCAAAGCCCAGGCTCTGATAgatttcactgctgaattcta-caaaaatttgGAGAGGACCTAATACcacttct---taaactctttaatgaaactgaaagggaag-cactattcccaaattcattcctggaagcaagaattaccctgataccaaaagcagacaaagacccaactgagaaaaaaatcctaCAGGCCAatt--------gaacataaatgcaaaattcctcaataataT-ATTGCAAACAGAATGTaacaattcatcaagaagattatttaTCATGACCAAATAGGACTCATCCCAGGGGtgca------------tatac--aaatcaataaatgtaatacaccatattaacagagccaaggacaaaaatcatatgataatCTCAATCAATGCAGAAAAAGTGTTTGACAACGTCTGACACCCATTCATGGTAAAacccctacagaaaatcagaatacatggtctttatctgaAACTGAT-AAAGCCATCTACTATACATCAACAGCCAACATcctaataaatggacaaaaactgaaagctttcactctaaaatca-ggacaagataaggatgtccactg--tcacttcTCATTCCGTAAGGTTCTGGAAACAGTG---TGAGCAACTATATaagagagaagaataaaagaaataaatgtaaaaaaaggaagaagtggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccgataaaaattaaaaaaaaataaaaataaaaaaaggaagaagttaaattatcatgatttgTAGATGATATGATGCTCTACACAGAAGCAACTAAAAATTATACCAAAAGACTTCCAGATTTCATAATCAAGTTCAGCAGTGttactggatacaaagtcaacattcaaaaatcacttacatttaagtgtgtaagatagataatcatactactaagtttttgttggatcatgagCAGAATGGTTTTGCACTATCATTGTTTGACtgcccactttttatgctttgattttgtaacttgaacaactatttctaagatgacaatatgcaatgtatcaactagtgatttcttagtgttattattttttttgatattctgtattatttctacccttttctgtaTAGCCTTCAGGTACAagaataacaaactcacagagagagtaAGTATGAAA-------CTTTCACAATTATATCaagaagaatgaaatacttaggaaatcaatctaatgaaggacgAAAAGGGCCCCTATGTGGAAAACTATAGCCCTCTGAAAAAGaggattgaagaggatattagaaaatagaaaggtatcccttgctcttgggtaggaagaaccaatatagtgagaATGGCCATAATTCCAACATTGGTATACAGGTTTAATGCTATCCTGGACAAAATTCCAACAgtatatcttacagaattagagagaG-AATTTTCAGAATTATCAGTTCATTTGGatccaaaagagacctagaatagcaaaggcaattctgagcaacagaGATAAAA------CAGGGAGCATCACAAgccctcacttgaaattatactaaaaaccTAGTATGTTAAAAATAGCatagtaccacaaaataaaacaaaacataacaaaccaaacaaacaatattaaaaaaaaaaaaaaaaacagatctgaggaccAGTGGTATAGATTAGAAGCTGCAGAAGCAACTCCAAAC---------------ATACTTACCAAGGAAGGTATAAACACCT--TTGACAAAGGTGTTTATTGAAAGCCTATTcaataa--aatgctgaaaaaactggatttctacatgctgaagatttaAAATTAGACC-TACATCTCTTGTTG

a score=7550
s chr3           159552646 706 + 160039680 AACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAA--ACT--------AAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT-------AATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAA-TCCCTCAACAAAACTAAA--AGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATA-----ACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG--TCTGAAGAAACAAGCTGGAGTA
s HiC_scaffold_1  66783315 610 + 233722169 AAGACAAATGAGGCATGTAGAACCCTAAACAGTCACAATCAAAAGAGAACCTCTCCACATAACATCAtagtcaaaataccagaaattcagtacaaggacagaat-ttaaaagctgttagagaaaatg----aGTAAT--------------CCATTAGAATTATGGGAGCTTTCCCAATGTAGATTC--------------------ATACATCTta-----------------caaaagt---------------------------atctttcaaaaat----gatggagaaataaggaatCGTCATAACAAACAACTCCtttaagaaattca---------tggccactaAACCAGTGCTCTAAAAAATTCTCAAgaatatcctagaaagagaca-acaaAGCCAG----CAAGGCCCAAAAAATCTAGTAGAATGAGTACATCAAGTAGGGTGAAGCAGAAGA---------GAGCAGAAAATCAAC----AGGATAATAATACATTGACAGGAATACATTCATACCTTTCAGTAATTACTCTCCATGTCAATAGTCTTAATTCCCCAGTCAAAAAACACAGAATGGCAGAATCAATCAAGAACCAAAGCCCAGTGTTATGCAGTataca-aaaatgcat-ttaataaaaaagaaacacacagattaaaaatcaaagg-------acaaTATCACATGCAATGGGATCCTGGGGAAAAAAGTTGGAGTA

a score=83833
s chr3           159552682 3629 + 160039680 GACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAA-----ACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAA---AAACCAATACAAGGACAGGAACCACA-CCCTAGAAAAAACA--AGAAGATAATCCCTCAACAAAACTAA------AAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCA-GGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGT-------CTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTG----------GGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAA--------CAGGGACACAGTGAAACT-AACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGG-----ATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGC--------AAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAA----GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGT--TTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATA-AGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGA-TAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaat-tagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataa---aaactgcatggtactggtata-gagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa-cagca----atggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtg
s HiC_scaffold_1 218598417 3569 + 233722169 gaccaaaaaaaaaa--------aaaaaaaaactcccagaAATTCAGA--------ATAACAACACATTATTAAAacctgtaagagaaaagaaacagaatacctacaaagaaaagtccaCGAAAATCACATAAGAATTCTCTACACAAATCCTCAAAtgaagaagagcttgaa-----gtactTCAAGTCTTGaatgaaaacaacttccaacccagattgatgtagcctacaaaactatctttgacaactgatggagaaatgaaacacatacatgacaaagaacaactaaagaaattcatg-----tctatcAAGTCAAACCTCCAAAGAGTAcggaaagatattctagacagatacaaaaatg---accacaattccaagaacaacatcaGAAAAAAACCACCCA-CAAAgcagagcaagcaattaaacagaggaaacAACAGGGAACCAACAGCAAAAAATAACGTGACAAAGATAACCCAAtacatatcacttataaccattaatgtaaatggcctgcattcaccaatcaaaagaaatatattgGCATAATGAACCCAGAAACAATATCTAGCAATAGGctgaatacaagaaacacatttaacttaaaaaagaaactcatagactgaaagtgaaaggacagaaaataataCTCTATGCAACAGATAGGTACCCTGAAGaca---gcaggggtagctattctatttgcagacaatgtaaacttcaaaccaagaaagatcaaaagagataatgaaTGTTATTATACACTTACTAGgtg-aaaattcaagagaaagagataaaaatcataaatatatatgtaccaaatatgggag-aactaaact-atgtaagaca--------aatgtcaacagacatgaaaaaaataa-gcaataacaatgaCTATAACAGGGGGACTTTAATACCACATTGTAA-CAatagatagatcaattagacaaaaaaaaaaaaaaacagcaaagaagcaacagaattgaaccaaacttgt-aaataaatggacttagtaaactTTTAAAGAGTATttcaccataaaaaaaaaaatcttaattcacatgcttctcagttgcacatgggccattgtctaaaacagaccatatactaggccatagaacatgcttaggtaaatgcaaaggaattaaagttATTCCATGCTTGTTTCCTcaccatagtacaatgaaattggaacttATTGGCAAAAGAAACCTCAAAAAGTCCATAAACATATGGA----GAATAACCCCTTGCTGAACAAt----cagtcacagatgaaattagagaataaatttaaaaatatctgcaatc-attgaaaatacaaatataatataccagaacctgtgagatgcaatgcAAGCAGTCTTAAGAGTGAAATTCATAGCAGTGAATTTTCACAGCAGGAAAACAGCACATGCACAAATATACAAC-GTAATGTGCATCTGAAC-TTcaagaaaaaagagcaagtcaagcccaaaacccacACAAG----------GGAAGGAAATATACata-tcagaggagaaattaattaATGCAATTCAGACcaagaaaacaacataaagaattaatgaatcaaagagttcagtactgggaaaaa----caaaactcataaaCCCC-AGCCAATcttatcacaaaaagaaagaaaag-actcaaatacatacaatgaggaatgaaaaggaaggaatcactgcagatcctatggaaattcagggAATAATTAATATCTAcactgaaaatctttactcacacaggatagaaaacacagatgaaatgga--aatttccagaaatgtatgaattatcaaaactgaatcaagaaggtataaaaagtTTGAAtaa---cat------taatgaaattgaaaatgtaattaaaaacttaccaacaaagagaagACTAGGTTCTGATAGcttcacagttgaattctacaagaaatttagagaacaattAATGGCCATATTCCTCACACTCATTAAAAAAATTGGAAGGGAAGTAATTCtacctaactcattcttggagacaAGTGTTACACTGATAACAAAG----AGAAAGAACCAACCAAAGAAGAGAACTATAAACCAATTTCTCTAAAGAACATAGATGTAAAGGTCCTTaat-aaatattagcaaatagaattcagaaaatcatcaagaaggttatataacatgaccaagtagaattcatcccaggaatgc--------tttgacatatgcaaatcaataaacatcatgcgccatatcaacaaagccaaagaaaaaaatcacatgatcatttaaaTAGCTGTAGAAAAATCTtatgacaaagtccaacactcatttatgataaaaataacttgtagaaaatcagaatagatggttcttacctcaatctgataaatgcaATCTATTACAAAACAATAGCCAACATGATACTAAATGAATAACAACTAaaacttttccatttaaaatcaggaataagataagaatatccactatcaccactcctattcagtacagATCTGAAGACACTGTCCACAGCTACTAGAcaggacaaagaaataaaaggaataaggatacaaaaggaagaagttaaactaacATTATTCCTAGATCACATGATGCTTTACATAGAAtacccccaaaaactccaccaaaagacttctagatttaatttaaaaaattcagtagcatagctggacacaaagtcaacactcaaaaatgactagcattcctgaacacaaacaacaaactcagtgagaa--aaattagagaaaccatgtccttcaaaatagcatccaaaaaagtgaaatacttagagATTggtctaaa-aagaaaataaaagtactatatattgaaaattacagttctctgagaaaggagaacaaagaagatatcagaaaatataaagatatcccttgctcatgaatacaaagaacaaatactgtgaaaatggccatactcccaaaattgttatacagatttcatgcaatcctgatcaaaa-tacaattaacatatcttacagatctagaaaaaaacat-------tccctttggaaacagaaaagatctagaatagcaaaggcaattctgggcaacaggggcaaagcaggaggtatcacaagtCCTGACttcaaattacactacaaagctactatgataaaagaaactgcatagTATTGGTAAATAAAACAAGCCTGAAgaataatgaaacagaatagaagatacaaacacaactacaaagacacttcaccaccttatctttgagaaaggggccaaacatgttcagtggaagaaagtc----tttttaataaatggtgctggggaaactggctttccacgtgCCTAAGACTAAAGTTTGACTGATGTCTATCcctatgcactaaagtcaaa-----atggatcaaagttcaaAATGTTAAA-TAGAAACACCAACTCTATGAGAATACAAAGTAGGTATAAATCTCA-----ATAGGGGTAGACAGaagattcatgaacaaaatccacaCTGTATggcaaatacttcaa-----agaatcaacaagtatcattttattaa-----aaagctttagaatatcaaaataaacaaccaacagggtgaaaagaaaacccacatggtaggaaaaaattttagccaactgttcctcagacaaagggcttctatctagaacatataattaattgaaaaaattg

a score=31552
s chr3           159552725 2426 + 160039680 CAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATT-----CACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAA----AAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAAC---TAAAAGAAGAC--------AGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTA---------------CACAAACAGGACCCA------------------------------------------ACATTC----------------------------------------------TGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGG-ACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATT----GGTCACAAAACAGGGCCCAACAGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGAC-----ACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTA-GACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACC---AAACGAGGAGTTGGTTCTTTGAGAA-----AATCAACAAGATAG-ATAAACCCTTAGCT-----AGACTCACTAAAGGGCACAGGGACAGCATCCT----------AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCT-----------------GAAGAAATCCAAAAC-----------ACCATCAGATCCTT-------------------------------------CTACAAAAGGCTAGAC--TCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATA-----TCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGA-AAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA----GCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAG
s HiC_scaffold_1  77435158 2503 + 233722169 caaaaattcaaaattaagaatGCATATTGAAAGCAG----AGAGAACTGCCAACTCACATATaatagaaaacatat------------------------------tttaaaggccGGGAGGATATTGAACAATGTATTTTGAATtctgaatgaaaataatttccaattcaGATTACTCTATCCATTAAGGCTACcttttgaaattaatgaa-aaataaagacctCCCTTGATAAGTGTAAATTATAGACATTTATGACCCCT-----AATCCAGCATTGCAGAAAATACTTA-AGTTAATcttaaacacagataaaaaagagaataacaattatgagaccaaagaaagaaatgtcttTGGAAAAGTAGATAAATGAAAACTGGGAATGAACCA-AATagtagaa----------aaaaaacaaaatgataggaattagTACATACCTTCCACAACTA--TCATAGTGTGAGTAGTCTTAGCTCTC-----AAAAGACACGGATTGGCATGCTAGTTTGTATTGTTTTGGtattagaaatcaaactcaggcaCCTTACACTTTCCAGGTAAGCTCTTGAattgctgagctacattcccagcccttggcAGATTAGtttggggaagaaagaaaattacctgTATGTTGCCTGCAATAAATACAACTCATCTGAAAAGACA-ACACAGACTAAAAGCGAAAGAATAGAAG-TGATACTACAAACAACTGTAGTTGGAGAGTAAGCAGGAATAGCTGTGTTTATATGCAACAAAGTAAATTCTAAACTAAAACTGGTTAGAAAAGATAAAGGGCACCatgt-------atcaatttaaaaaatcaccaagaagagataacaattggGAATATATCGATATTAAATGCTGGCAAAtccaatttcataaaataaacagtacTTGACATAAAAG-ACAG----------ACACATTCACAGTGGCGGACTTCAACACTCCACTCTCACAAATGGGACGGGTCAACCATAAGAGAACCAAG-AAGGATACATCAGAATTAAGCTATATTTTAGAGCAGGtagatttaaaagacatttacagagtgttccatacaACAATGGTAGAAAACACTTGCTTTTTAGCAGTTCATGGAATTCTCTCCAAAAT-----ATACACTTTTTAGGCCATAAAGCAAATCTCAACACatacaaaaagaactaaaataatttaatgcaTCCTGTCATATCATAATAGTATAAAGCTGGAAATCagtagaaaagaaaa------------------cacatggtGGTAGAACAATTCATTCTTGATAAATCAGTGGGTCACTGAAGAAACGAaggaagagatttaaaaattcctagaatgAAACAATAACAGAAGGGCaacata---aaatttttgaaattcttaacaatgaaagcagttccaAGAGGGAAGTTAATGGCTACAAGTACTTACATTAGAAGAATATATTGATCcagaataaataatataatgatatatctcaaggtcctagaaaaataagaac---aaccaATCTGAAACcaataagaatgaaagaaatactaagatgaaagaat-aaattaatgaaattgaaacaaaaaca-----taaaggacataaatttaaatttaaaagttggttctttggGGATGAggaattagctcagcggtataagtgcctgccttccagacacccagtagtgagttca--------atccctggtaccaaaaaaaaaaaaaaaaaaaaaagaagaagaagaaagaaagttggttatttgaaaagtaaataagagaaaaaaatcccaaactgTCAAAATTAgacataaaaatctttaaattataaCAATCATCATTGTAGTTCAAAGCATTACTAGAAATTATTTGACAGTCCAGTAAATCAAAGAATCTAGA---ATTGGATGGATTCTGGGGCACATGTGAGCTACCAAAATCgagccaaaa--------atattttaaaaagaagcataaataataagcaaaag--attaatacagtaataaaaatcctaTCAATTCAGAAATCCCTGTTA----ATGGATTTACTGCCTAATTTTATCAGACCATTAGAGAAAAATGAATGTCAATGTTCCTGGAACTTTTCCATGTAGTAGAAACGAAAGAAATTCTTTCAAACTTACTCTATGAGACCAGTATTATCATGATTCCAAAG--CCAGATAGGACtcaactgaaaactaaaactacaggCCAGTATCCT---CGAACATAGATGCAAACGTTTCCAAATTGATTCTTGCAAACTGAATTCAACAA-----------ATTCACACACTGTGATTAAGTTTGTTTCATTCCAGGGATGTAAGG-TAGTTGAACACAT--AAATCAAGAATTGGAATACATCTCATAATTAGAAACAAGGATagaaatcacataatcatctcaacagATATAGAACAAAGCTTTAGCCAAATTCAAcctcttttcatgataaaaaaaaaaaaccatgataaAAGTAGATACAGAAGAACCttattttaaacttctaaaaGCCAGATA-AGAAGGCCAACATCATACCAAAATCATACCAAatggaaaaaaactaaaagctttacTTCTAAAA-----GAGTGAATCAAGA-GTTTACTCTTATCACTCCGGTTCTGAATAGCTCTTGAAG

a score=27248
s chr3           159552758 1773 + 160039680 CAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAAC-------------AGAGAA----AAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAA--AACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACA-----GGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCA-AATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGA-CAC--CTTAGT----AAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGA---ACATTT-TATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGG-------AAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGC
s HiC_scaffold_1 227404779 1666 + 233722169 cagtcagagaaaaacaaaaaattatatat--------------cagaatttcagcagacttctcaatacaaatctTAAAGGCCAGAAGAGCATGTGAAG----TATTTCAGCACTAAACACAAATAACGTCCAACCTCAGCTAACCTACCCA-CAAAGCTTTCTTTCAGAATAGGTGAAGAAATAAGAGTATTTCACAAAAAAGACCAGCTCA------AGAGACTTATGACTCCAGCATTCCAAAAAGCACTCACCAATTTCCTAGGCAGAAGACGTGAAACCAAAACAGGTCAAAACCTCGTGACACAAAAACACCAAGTAAGG------TCAACAGGtaagcaacaaaaaataacaagaaaagaaaaataagcaagtcAGTAACAGAGAAGGCAATAGAGCAAACAACCAACACTTCTCAGCGG-GCCTCTCAATGTTAATGACCTCAATTCCCCATTTAAAAGATGAGGATTCATAGACGGGATCAGAAAACAGAATCCAACTGTCTGCAATGTGCAAGAAGTTCACCTAATGCAAACAGatgttcacagactgaaaattaaagg----------GTACTTCATGCACCAAGACCTG--GAAACAAA-TGGGGTAGCAACTTTAATCCCAGAC-ATGTAAACTTCAAGCTAAAGCTGACTAAAAGAGACAAAGGAGGCCACTACACCCTGCTCCAGGGAAGGATGTATCAGGAAGAA---ACACTGGTAAGTATTTCTTCACTGAGTATCAGGGCACCTACCTTCATAAAACAGCACTGCTGAATACAAAAGACTCCAA--ACATGTTA------ACACGCCCAGAGTGGG-GATCTTAGCACCCCACTTTCACAAA--GTCAGGTC----AACTAAACAATAATCACAGAAACATTAGAATTAAACCACACCCTCAAACATACCGGTGTACTTGATATCTACAGATAGATACCTACATCCCAACACAGCACAGTACACGTTCTTTTCCGCAGCACACGGTACTTTTTGCAAGATAGATCACACATTAGTCCACAAAGcctgcttaagtaaatataaaggttTTGAAATTATCCTGTGTGTACTCTCAGACCACCATGCAATGAAAATAG-----AGTTgcagaagaaatagcagaaaaggTAGAAGCATCTGGAAAACTAACAACACACCTATACACAAC-CAGTGATTATAGAAAAAGTCAAGAAA--------------TTTA-----------------------AACTCACCAAAAACTCTGGGACCCCAAGAAAGCAGACCCGAGAGAAAAGTTCATTGCAAACAATGCCTCCATCAGGAAAATGGAGCAAGCTCCAGTGAATAACCCCATGAGGAATTCTAAAATACTTGAGAAACA------CAATTCCGGCCAAAACAAATTAA-GGAGGGAAACTATaacattagagca-gaaatcaatgacatggaggctaaaaacaaacaaaaataatgcacAGATCGGCAAATCAAAgcactggttctttgaaagaataaacaaaacagataggCCCG----AGGACTTACCACATAGTGCAG-----------------------CTAGAAATGCAAAAGATGAAGTCACAACAGACACTGTCAAAATCCagaatatagtaa----ctactttaaaaaacTCAATTCCAACAAATtggcaaattttaaagaaatag----attcctagatgcatataaattaccaaagctaactcaagaagacacaaatatgCTAGACAACCCAGTGACAAGCAATGAAAtcaacacagtaaaaaggaaTCTGTcagc

a score=41473
s chr3           159552767 2640 + 160039680 AAAAAGGTCAAGTAAC---ATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATT-CCACGACAAAACTAAATTCACCCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATA----------------ACAGAGAAAAACCA----ATACAAGGACAGGAACCACACC-CTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGA-ATGCCAACTTTAACAACAAA-AATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACT-----------------------------------------------------------------------------------------------------------------AACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCAT----TAAAGACACCTTAG--TAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGA-----TCTTCAATAACAACAT---AAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAA------------------------------------------------------------------------------------------CTATTCAAAGAATTAA--------CCAAAC------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCAC-AGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCC----AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCA---------------------------------------------------------AGAACACA--------------------------------------------------TTAAAGCAATCATCCATC------------------------------------------------------------------------------CTGACCAAGTA-------------------------------------GGTTTTATT--CCAGGGATGCAAGGATGGTTTAATAT------------------------------------------------------------------------------------------ACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacaccctt
s HiC_scaffold_1  66016515 3095 + 233722169 aaaaagaccaaaaaatcaaataaaaaggtaaacgaagtagaatcacagcagacttctca---------atacaagcc-------cctgaagtgaagtatttcaagccctaagagaaaataatttccaatccAGGTTAACTGATCCAGCAAAAGTATCCTCCAAAATAGATGGAGatat-aaggtatttccatgaaaaagaccaGCTCAGAAAATACATGACTGCTAACCCAGATCT--GGAGAAAAATACTTAACATTATTCTTGACAGAAACAATGCATCAGATACAGCTAAAAACACAGAACAACTAGTGAAATCAGTGAATaaa--catcaacaaagaaacataaggaaaagaaaaacaaaggatacaccaacataaaaagaaagcaatgacAGTAAATAACCAACATATCTCAGTAATATCTCTCAATTTTAACTGCCtcaattctccaattaaaagacacagacttgccaggcatacagctcagtggcacagcatctgtctggcaagcacaagatcatgagttcaatccccagtaacaaaaagagtgacagacagacagacagacaggcaggcaggcaggcagactggATCAAAAAGCAGAATCCAACAATCTGTCACATtcaggaaatccatctaacccaaaaagataatCA--------------AAGGGAGAAAAACAATGTTCCTTGCACCAGGACCCTGAAAACAAGCATGACTAGCAATTCTAATATTAGACCTGGTGAACTCCAAACTAAAATTGATTAGAAGAGATGAATAAAATCAATACACA--------AGGAACAATCCAATAAAAAGAGATAACACtgataaacatatatgcaccaaatattggAGCAactatcttcataaaacaaaaacagctgaAATTAAAAGACCAAATAAACACTA--------ACAATCATATTAGGGGATTTTAATACCCTACTTTCTCAAAGAGATAGATccattcaacaacaac--aaca-----acaacaaaactgaacTATTCCCTTGAACCTACAGACTTAATGGATAT--ATAGGGTATTTAACTTCTCTACAACAaagtatacattcttttcagcagcacatggtagcttttccaaaataaatcatacactagtccacaaagcctgctttaaaaaatacaaatgaatagaaattactacatgcatattatcagaccactgtgcaatgaaaataaagacattagAAATAACAACAttagaaatttcagaaaaagaaaagtt-cgAGGAAAGTTAACAATATACTCCTaaataaccaatgggtca-------------taaaaaaattaataaatttctgAAAGTTAATGTCAATGATATTACAACTTATCAAAACCTCTAGGAAACTATGAAAGCAGTTCCAAGAGGAAAATTCATCACAATCAATACTCACCTTAGGAAA--AGAGTAAGCTCAAATCAAGTACATTATAAGAAATCTTAAGAtacttgaaaaacaa--caataaaccaaccccaaaccaaaattaaggaaggaataaTAAAGCTAagagtggaaatcaatgaaactgagaccaaaaaaaaaaaaatggggcacATCCCTGTATCCcatgtatcccagcactcaggaggatagGGCAacaggattgctgtaagttcaaggccagcctgggctataaagagagttcaaggccagcctgaactgcacagtgtaaccctctctaaaaaaaaaaaaaaaaatcaaattgattttttgaaagaataaataccaaACTTAACAAGAGAAAAGACTCACATCAATGAAATTACAATTGAAAAAGTTAAACTTGCAATAAGAACTGTAGAAATCCAAAAGACAGTAA----ctacttcaaaaattattttacaatgaatcaggaaaatttgaa-gaaatgaacagattcctagacataAAC----TACCAAACCTAactcaagaagacataaatatgctTAAAAATCCAATAATAAGCAATGAAATTAACACAG----TAATAATCtaccaacttaaaaaaaaaaagacaggaccTAATGG-----------------ACAAAAACTTTAAGGATGTTACATCACCAACACTCCTAAAACTCTTCAAACAAACTGAAAGACAGGGAGTGTTCCAAAACTCACTTACGGAAGCAAGTATCACCCTGATCCCAAAACTGGATAAAGACCcgactgaaa-agaaaaccacaagtcaatctccttaatgaacatagatgcaaaaatcctcaacaaaatattagcaaatagagtGTAATGTTgttcaaatgaaaagagaaactgatAGGGGAAATGGGAAAGGTAGGAAaagggaaaacacacacacacacacacacatatatatacacacacacacatacatagaagatagttaagatagttatacagctaatttcttttagtttattgaaattaaagatttgtattaatattgtttggacaatatttcatgcctgtatcttgcagtctgagtaactactatgaagataataatatgtaatgtattaattgTTACTGTCCTATTAGCCTGATGTgtaaaactaaatttatatatatatatatatatatatatatatatatatatatatgtcacatCATGATAAAGTAGATTTCAccccagagatgcaaggatggttcaacatatgtaaatcaaaaaatgtaaaatatcacaTAAATAG----AAGGTCAAAAACCATATAATTATTTCAACAGATACAAAAAAGGCTTTTGACAAAACCTGACAATTcttcatgattaaaaaccctgaagaaaacagaTCCATAAGGACCATACCTGAATGTGATAACAgctatatatgacaaaccaatagccagtatcattctaaatggggaaaaactaaaaacattctccctaaaatcagaaacaagatgaggatgtccactatcacctctTCTATTCAATGTattactcaaaacattagccagagcaattaggcaagagaaag----aaaaggggtacatacaggaaaggaagaactcaTATGTTTAGTATTTATAGATGACATGACTCTGTATATAGAAGACTCAAAGAACTCCACaaaaaaacttttaga----ataaa---CTTCAGC--AGTAGCAGGATAcagaataaacacacaaaaataattagcatttgtgtacaccaacaacaaatggaaagagaaggaaactatgaaaataataccatt

a score=47949
s chr3           159552816 3752 + 160039680 TTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAA---------ACTAAATTCACCCATTATCTCTCCACGA-----------ATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCA-ATACAAGGACAGGAACCACACCCTAGAAAAAAC---AAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTT---TTCCT----TAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTT----CCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACC--TTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA-CAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAA-ACATCTAAAAGCTCTAGAAAAAAAAGGAAG---CAAATTCA---CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACT---CGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGA--TGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATG---------ATAAAAGTTTTGGAAAGATCAGGAATTC--AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGA-GCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgta--tgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagc----aatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcat-ggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatg--------aacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctg-gcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaa---cagcaatggcttgtgct------------gtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatc-attacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtggga
s HiC_scaffold_1 228955059 3395 + 233722169 tttattttcaaaaattctgaCCAATACTAAAGATTGGAGAAGAATTTTGCAAATCTTAAAAGTAAACAACCATGAACCTCGATTAATATAACCTgcaaatttgtcttttaaaactgtaagaaaaataaaggctttccatgacaaagagcatcCAAAGAAATTCACA-ATCATCAAACTAGGACTACAAAACATATTCAATCCTACACAG-----CAAGAGGGAAAAACTATGAAAAAGGATAG-------ACTCAATAATTAATCTAAATGGGAGAGTTGTttcacaagagagaaaaaaaacag----aagaac-------------tgGCAGTGGGAAAACAATGCAGTGACAATTCAGTAGCTGCCTATTGTGATACTTCTCAGTATAAAGCAATTTAAGTTTCTAATTAAAATAGACAAACTGTCAGATTGtatcagaaaacaaaacccaagtgTATGTTGCCTACCAGAGAAACACCTCATCCACAAACACCTAGacta------aaagaagaatt--aaaatgataT-CTATGTAATAAGTGTGTGAAAGCAAACAGGAATAGCTATCAAGTTGTCAGAAAAAGTTTACTGGTCATAAACCAAAACTaatcagaagagagaaaaaaggtcaGTATATCCTAGCaaagggaacaattcaatagGAAGAAGTGAcagttataaataaatatgcaccaaatgtcagcacactcaattttataaaataaatagtacCAGGAATAAAAGGTCAGAAAAACAACAATACAATCATAATGGATGATTTCAATACTCC-------TCAA---ATAGGTCAGTCAGACAATCAACCAAcacagaaatatcagagttgaagcAGACCATTGAATAAACTTACTTAACAGAGGTCTACAG--TTTTTCATGCAACCATTACAGAATACGTTGGTTTTTCCCAGTAGCACACAGAACTATCTCCAAAAT-ACCCATAT---TGGCCAataaaacatacttaaataaacattaaaaagttgaaataatC------ATACTATCAGATCATGGTAAAATGAAATAAGACATCAACACCAAAAGAAATCTCAGGAACTATACAAACAAAGagagattaaataatacacttttcA-TAATCAGTAGGTCAGGGAAGAAATcaaggaggaaattgtaaaatttCTAGAGTCAAACGATGATGGTAGCACTATGTACTAAACTCTACTGGACATGACAGAAGCAGTTTGAAGAAGGAAGTTTATAACCTTGAGTGCTCACAGG--GAAATTAGAGCCTGTCCCCACCAAATAATCTACAGGTGCCTCTCAAGGTTCTAGTAAAACAAGAACAATTCAAATCCAATACTTGTGTGAGTTTTGTAGAAGGAAAAAATcataatgatcagagcagaaattatgaaatttataataa-aattacaacACAAAGG-TCAATGAAAAAAAG------TTTGTTAAAAGGACTAGCAAGATTCATCAGTCCTTAGCcaaacttaacaaaaag---aagaaaagactcaTATCTAA-gcgattagaaatgaaaaaggcaaaattaaaatgaacactGTTGAAATTCAGAGCATTATAAGAACctactttgaattttt---cttta-aaatttagagaatctgaaagaaatggataaattcct--acaTACATGAATTATCCAAACTGAAcctagaagatataaaaacacTGAACAG-ATGATAATAGGCCATGAAATAAGGGCAGTAATTGAAAACCAGCTAATGAATTAAAGTCCAGGACCTGAAGAACTCTCCACTGAATTTTACCAGAACTTAAGAGAA---CTAATGTCAACATTCCTCAG--tgtttcatgaaattgaaaaggaaccCACACTGTCAAGCTCATAGCTGAAAGCTAGTATTACTCTGACAC-----------AAACactcaacaaaaaaagaaaactatgggaaggttttcttaatgaatatatacatatacaagcCCTCCACAAGATACTT-----CCAAA---AGCAatacaataaatcaataa------atgattAAACTGGCTTCATCTTCGAAATGTATGAATGGTTCGACCTATATAAATCAGTAAGTATAATGCATTATACAAACAGAAGCAAGGATAAAAGTCATGTAGTTATTTCAATAGATACTGAAACAGCCTTTGTCAAAAACCAACACTCACttatgttgaaaaaaaaaaaaaccttgacaaAAT----AGTTTAGAAGAAACTTACCTTAAACTAATAAAACCTGTTTATATCA------CTACCAACATAAGTCTAAATAGGGAAAACACTGGAAATGTAGCCTCTA--------------------------------------------------AGTACCCAAAACTTTAGTTGGAGTTACCaggcaaaacaaaaatgtaaa-gagattctagtagaaaaggaaaaagtcaagcTGTC----CTTGTAGACAATATGATTATTCATACAGAAGGCCGGAAAGTTTCCA-CAGAAGACTCTCAGAACTAATAGATAAATTCAGCCAAGTG---GAATAT-------------ACaaattaa-----------tacacaaaaatcaa-----------------------gaacattaccc---------------------------------------------------aaagtgatatatatatacttaataaaaat-------------------aaattgaa----atatcaaa------------------------------------------------------gtttttttttcataa-----cTAGAAAGTCAAGTC---------TAAAATTCC------------TAGAGAACCAAAAGAGACCCAGAGTAGCCAAAGCTATCCTgagcaacaagaaaac-----aaacaaacaa------caacaacaaaaaaaca---ggcgGTAT--------------TAAAATCTTGCTATAAAGTTACTacaataaaagtaatataaatactGGAAAAAACATAG------TGACCAATGAAATA-----GAAAGTTCAGACATAACCACAGCAGCTCAAACACTTTTGGCTATCTG-TTTTTGACAAAAGGATCAATAATACACATTGGAGAACATGGAGATTCTTTTACAAATGTTGCTGCAAAAAATTTGtcatccacatgcaaaagaatgaatctAGATCTATCTCCCTCGCTCTGcactataataaaataagaatggatcaaacatctagatattaaaatagaaatattgaaACTGCTGGAGGATAACATAGGGGAAA-CACAGGACCCATAGGCGCA-GGGAAGGACTCTTGAGTAGAAATCCAGTTTCAGACTGTGACTACCGCAGAAGAATAATAACACAAACCAACAGATGGGGTCATATCAAAttcaaaagcttctgcacagcaagaaAA-----TAATGAGCCAA------CTCccccaaaatgagagaaaacctGCTAGCCATTGTA---TTGATAGG---CTACTagatagaatatataaagagttcCA-AAATTGAACAGCCCAAAA-CAAATGACCCAGTCAAATAATGGATAACTGAAGTAAGGAGACACTTCTCCAAAGAAGCAACACAAATGGGTAATAAGGACT--GAggaatgtttaatttctttatccATCAGAGAAATGCGAACAAAACCctctctgagattccatctcactccagtgACAATGGTTATCACCAGGAGTACACTCAACAGG---TGCCCGGGAGGATGTGGCAGAAGGAGA--CCTgctgcattgctggtggga

a score=47271
s chr3           159552836 3463 + 160039680 AAGCCAGAAGAGCCTGGA-CAGATGTTATACAGACACTAAGAGAACAAAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATT-CCACGACAAAA-----CT---AAATTCACC--CATTATCTCTCCACGAATCCAG---CCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACA---ATTCTGAATATC---TACGCT-----CCAAATGCAAGG----GCAGCCACATTCAT-TAAAGACACCTTAGTAAAGCTCAAAGCACACGT-TGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGT--------------TATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTG--CCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAA--AAGCTCTAGAAAAAAAAGGAAGCAAATTCA-----CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACC--AGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA----TTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA--CATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattaccta-----tcctaaatcagataggggactaatatccaacatatataaagaa
s HiC_scaffold_1 216971963 3198 + 233722169 AAGTCAAGAGAACTTGTAGTAAAAGT----CGatcactaaaagaaaagaaattataaacc---cTAATATATCTA-CAAAGCTATATTtcaaaactgattaaaaaaataaagtctttccatgacaaagagcatctTAGAAATTCATCACTACTGAATCT----GAATCCAagaaattctcaagg----atatccaACTAGAGCCAA--AGATGCCAGAAAGTTTAG--TAGGAGGGGTGAATAGGTAAGCAGAAGGGGGACAAGAAAGGAACCAGCAACAGGAACATAATGAAGAC---AATTTCAGAAATAG-----GTTGACATCTAC----CAGTAATATCTCTC----TAAATGGTGCAAAATCCCTAATCAAATGA----GATTGCTgttgtggctgaaaagataaagcTGTGTGGTATGCTCTAAACAAAAGACACAATTAATCCAAAAATACATTCATGCACTagaaatagaagaatgaaaaacaatattctatgcaacTAAAGCCTAAAAACAAGCAGGAATAGTTATCTTATTTTCACA-AAAAGTGCATTTAaactaaaactgatcagaagagggaaagaaaaacataGCTTATTGGTTAT-GGCAAAATTCaacatatatatgttatatatgttttatatattatatatgttgtaTACCATATAtgatattttgcatatatatatatatatatatatatatatatatacacacacacacatataccccTCAGTcacacataa-----------aacaaat-------attactggAC---CTGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAatattagttatttatttattgaacaaGTGGAgctaatagatatctacagagtgttccattcaacaacaaca--acactcaTTCTTCTCAGTAGCCCAAAAAACTTTCTCCACAATAGACCATATATCACCCCACAAAGCATGGTT-AATAAATACAAGTATCTGCAGCTTAA------------ATCAGATTATAacgcaatgaaactagaaatcaagcAAAAAATCAGAGATATTATTCAAACAT----GAGgacatgaaataatacatttt--aataatcaGTCagccacagaagaaatcaagaaagaagttAGAAAGCTCCTGCAATCAAATGACAATACTGATATGGCGTAACATATCCTGTG-GACACAGTGAAAAAAGCCGTAAGAGTGACTCTTACAGTTATGAATATTCATGTAGGAAAAAAT-----AGAGCAATC--------CCAGACAAATAACCCAACGAGGTCCCAGATAAACAAGAAC---AATTCAAAGCTTctataagaaatgaa------------attaaa----aggatgagATTGG--AAGTTATGATATTGAGaatga---aaaaatacaacaaattgaagatctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTTACCAGA---------------------------AAAAGTTGAAATTAAA--------------------TCTATCAAAGTCCTCAAGATCATTAACAACCTCTTTGAAAGTAAGTGCTGCATTAAATTGGAGAATCCAGATGAAATAGATAGATTtctagatatatatatacattgccAAAACgaaaccaagaaaatataaaagctgTGAATAATTCAATAACAGGCAataaaattgaagcagtaatgAAAACTT----------------------ACCTGATAGATTCATTGTTTAATCCTACAAGAACTTCAAGATGAATTTAACgccaatactttttaaattttttaatgaaaccaAAGAGGA--GTACTCT--TCAAATCATTTCTAGAAGATAGCACCACTTACCCTGATTCTAAAACCATTCTAACACCCAAGTAGGAAAGAAAACTACAGAGCAATCCTTTTAATGAACATGAATGCAAAAACTTCCAACAAGATTCTGGataaacaaat---------catcaaaaacattGTTTATCATAACCAAAATGGCTTTAGTCTAGTGATGTAATGGTGg-ccaacatatgcaaatcaataaatttaatagacaacg-aaacagaagcaaggacaaataTCATATGATCATCACAACAGA-----GAAAAATCTTTGAGAAG---TGAAACACATTCATAACAAAAACCCTG--AAGATCta---------------atctcaatctgataagagcCAATTCTGGTAAACCTTctgccaatatcatactaaaaggGGGAATGCTGAAAGAATTCCCTCTAAAATTGcaaagaagacaaggatgtccg----------aCAGTTTCTATTCAGTGTACTCAAAACATGAGCTAGAACAAT----CAAGagaagaagataaaaaagaaatgtgtgggaaagaaagaagtc---atgttactatttgcagatgactcgATCCTTTATCTGAAAGACTCCAAAAATTCCACT--AAGATTTTTAGAACTGATAATCATATTCAGCAGTACAGTAGGACACAAAGTTAACATACGAtaatcagtagcatttctgtgCACCAATAACATactcacagagaaggaa-------aaataataccattcacaacAG-CACTGAGAAAAAGTAATACTTACAAATTAACCTATCTAAAG---------------------AAAACTACAGCT-Tctgaa-aaagagattgaaaagaaTACCAGA-------------TCACTTTTTCCTAAATAAGCAGAACCTATATTGTTGAAAATAATCACACTTTCAAAActcatatataaatttaatttattcccAATAAAAATGGGagcagcattcctcacagaactagaaaaa--aatcctaaaattcatttggaaccagaagagatccagcatatcaaaagaaatcctGGTCAACAGAAGGAAATCAAAAGCCATCACACT-CcagatttcattttatattgcaaagctacagtgataaaaacagtattctGTTGGCATAAAG-CAGGTATGTAGGTCAGTGAAACAGAG-AGAGGCCGCAGAAATGCCCCGAGGCACAttcagccatctgatctttgacaaagggaccaaaaaatTACACTGAAGAAAAGATAACCACTC--ACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGA--------------CTATCCCTCACCatgcagtaaaataaa----aagtagattaaatatctaaatattaaaacagaaatctgTAGTCCATTAGGAGATGAACTAGGTAAAA--CTCAAAGATACAGGACTAAGTAAGGATTTTCTGAGCAGAACCCAAgttacacaagaaataacattaagaatcaataaatgaggtTACATCAAATTC--AAAGCTCTTCACAGTAAGGAaaaccaccagcagagtgaagagtcaatgtacagaatgggaaaaatt--ttatcCAGCTACTCC----CCAGACAGAGAACTATTGTTCACAATATGTAATGAA

a score=80068
s chr3           159552873 4164 + 160039680 [encoded data, 4669 characters]
s HiC_scaffold_1 130105087 4470 + 233722169 [encoded data, 4669 characters]

a score=41326
s chr3           159552899 2633 + 160039680 TACTATACCCAGCCAAACTCTCAATTACCACAGATGGAGAAACCAAAGTATTCCACGACAAAACTAAATTCACCCATTATCTCT------CCACGAATCCAGCCCTTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGA--TAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAA---------TAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACC-----TCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTA--AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAAC----AACACTCTTC-----TCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAA-------------------------------------------GACTTTTTAGAGTTTA------------------------------------------------------------------------------------ATGAAAA--------------------------------------------------------------------------TGAAGCCACA-----ACGTACCCAAACCT---------ATGTGACACAAT---------------------------------------------------------GAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCAC--CTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA-CGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG-ATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATC-CTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTA---ATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCC-TAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatag--tcacaaataat--ataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctga----agaaagaaattaaagaagatctcagaagatggaaag
s HiC_scaffold_1 124173255 2835 + 233722169 TactgtatcctgcaaaactatctttcaaaattgaaggagaaaCGAGAACTTTCCAT--TGAAAATAA---CAACCTTAAAATTTTGAAGACCACTAAGTGAGCACTACAAAAGT-----ACTTAAAGAAATCCAGAAGACAATGAGGCCCAAAACATCAAAGAGACTAAAGGAATGAATACATTAATCA--TGGAGAGcaggaaagcaaaagcaaaaattaaaaacta-aacaacaaaaaataatccaATGACAGGAATTATTTAACATCATTCAGTTATCATTCTCAGTGCAAATGGCCTTAACTCCATaatcaaaagatacaaattagTAAATTCAATTGAAGGATAAAAGCTAACTATATGCTGTATATAGTAGACATAGCTCAT---CAATAACAGGTAC--ATTGAAAATTagatgatggaaaacaatacttcatgcaatgaAACACTGAAAGACAGCAGAAGCAGCCATAGtactttcagaaaattttaaCTTGAAGCCAAAACTAACTAGAAGAGACTAAGAAGATCACTGC-TAATGGATAAAGGAACAAGTCAAAAGGGAAAGACAGCAGTTATAAATACATGTGCATCAATTTTTGGAATGTCGAGATT--TTTAACACA----AATACTGCTGCACATAGAGGTCAGATAAACAGCCACACAATCATAGTGGAAGCATTCAGTACCCCACTGTTACAAACAGACAAGTCAACTGGACA-AAACTATCAGCAAAGAATATGAGAGTTGAACTATACCTCTGAA-CAAATTGACTTAAGAGATAGCTACAGAATATTAGATACTA---CAATAGCATATACACTTTTCTCAGCATCACATGAGActt----caaaatttac-acattttgagccATAAAGCatgattaaataaatggaaaaagatcaaattaatatcttgcatattatcagaccatgatgcaatgaaattggaaacca-tGGCAA-AGGAATCACAGAATTTTCTCAACCATGAAGACGCAGGAACATGAGCATTCTTGCATAgtcaatg-------gataaaaaaagaattcaaagaagaaatgatattGGTAATACAGCATATCTGAACCTAAGTGATAGAGTGAAAGTgaattgttatgatttatatctaaataTCACCTCAAAGTCtcaagcatacacacacacacacacacacacacacacacacacacacacacagtcctatGTCATTAAAACCCTCCATCTGATTCCTGTCTGCCATAAACTCTGCCTTCTCTGCAAGATCCTTTTGCCATGCAGGCCACTGCCTTGAAGCCAgataattatggactgaaacctcttcaaactatgagccaaaataaaccttttcttctttaacttgtgggtattttgatcaagcaataaaaaagtaactaagaaagcaGTTTTAAGAGG-AAGTTTGTAATTGTGAGCGCccacataaaaaca---gaaata--------tagca-----ATAATACACCTCAAgttcctaaaaaaaaaacaagaacaatccatgTCCAAAACtgatacaaggaagaaaattataaagatcaaa----aaattaatataactgaaattaaaaattcaatacaaagaaaaaaatgaatcaaagagttggttctttaaaaggaTAAACACAATAGATAAAtcc---accaga--------aaaaaagaaagaaaaaataaatgtcaatgcaattagaaatgggGATGAAACTAAAA------------AGGAAATGCTAAA----ATCAGTATTTATATTGGAAAACCTGTATTTCAATAAATTAGAGAATACAGAAGCAATGGAgaaattcctagatatatatgaatt-taaaaatggaagcaaGAATATATGAATATCATGAACAGTTCAATAACAGACAATGAAGTTGAggcaatattaaatattttactaattaAGAAAAGT------------GGACTCACCACTGAGTTTTATAATAACTTCAGGGAAGAAGTAATTCCAATATTCCTCAAACACTTCCACAAATTTGAAAAGGAAGGAACATTGCCAAACTCATCCCTTGGAGCTAGAATGAACTTGATGCAAAAACTAAACAaggatttctcaaaa--agaaagttacaaaCCAGTTTTCTTagtgaatatagatgc-aaaattctcaacaagatgcttgcaaacagaa---aacaaatcattaaaaagatcatacatcacaAACCAAATTGGTTTCATGCCAGGGATGccagaatggttcaacatacaaagACCAATAAAAGTATGCATGCATCATATAAGCAGAAGTAAGGAT-AAAATTACATAATAATCtcaacaaatggaaagaaaacttttaacaATATATTTTGTCTATTCAcgataaaatttttacaaaacttGCTACATAAAGACCT-TACATTAaaatggtaaagaaaatttaTGACGAACTCATTACTGACACCACATTAAATGGGGA-AAACAGAGAGAGTTATCAGGAAAATCAGGACCAAAACAAAGCTTTCCATTCTCACTATGCCTTTTTGCTATATTGCTTGAAACTTTACCCa-agtaat-----aagaaaaagaaataaaagggattcatataggaaaggaagaagtctaAACAGCCTTATTTGCAGATACTGTAATTCTTTACATTTGGGATTCAAAAAAATTCTACTAGCGGCCTCTTggaactaataaataaatttgacaaagtggcagaatacaaaatcaacacacgaAAGTTAATAGTGTTTCTACACACCAATAATGAACCCACagggaaaaaaagtaagaaagcaaTCTCATTTATAGTagctttaaaaacaattaaataaatatcTAGGAACTTACCTAATtaaggaaatcaaaaacttctATACTGAAAATTGCATTgctctgaaaacaaacaaaaattaaagcatgtattagaaaagaagaag

a score=14289
s chr3           159552998 983 + 160039680 TTCAAAGGATAATAACAGAGAAAAACCAATACAAGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCC--CTCAACAAA-ACTAAAAGAAGA--CAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATC---TCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACA---TTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGA-AACAGAAACTAAACAGGGACACAGTGAAACT-AACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAAC--AACACTCTTC-TCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTA
s HiC_scaffold_1  64706907 918 + 233722169 ttaaagagacaaTGATAGCAATAAAGCAAAACAGGCTGAGGAAA-------TGGATATATCAGTTAGGTTACACAGTtaagcagagaagaaaaaaagaatcagcaaCAGAAAGATAAT-------------ACAAAGACAGTATTAAGT--CAAT-ACTTTTCAGAAATAACTGTCAATGTAAATGGTTTGAATTCCCCAGTGAAAAGACAGAGACTGGCAAAATAGAcctagaaataaaatccaacagaatgctatatataagaaacatattgaatccaaaaataaatttgagacta----aaaatcaaaggctagcaaacaatattctatgc-aatGAGCACAAGAAATCAGCGGGACTAACTATTCTG--TTTAGACAAAACAGACAATCAGTCAAAACCTATC--AGGAGGCGAAGAACATCACTACACATTGTTTAAGAG----ATTCAACAGGAAGTGATAACAAGAAAGCATATAGAAGCACT---TACAGCTGCTGCAACacacttcataaaacaaacattactgGA-CTTAATacaaaagtta------ataaaattataGGAGAGGACCTTAATAACTCACTGCCAT--------AGATCAAGCAGAGAAAAAAGTCAATAGAGAATTATTAGAGTTGAACCAAAACTTtg-aatgaatggactt---agtgTTCCACtcatca---------aaaacaaaat------tcatgcTTTTGGCAGCACATAGAACTTTATCTAAAGCAAACCATATACTAGACCACAAAGCACAGTTAAGATaatacaaaagaagtgaaattattccatgtgtcCCATTAGAccatagcaaaataaaactagaaatctatGGCAAAAAACACCATAGAGATTATGCAAACACAAGAACATTAAACCAGATACTCTTTGTCAATGA-------GCcatagaaaaaatgagagaagaaactAGACGATGTCTAG-Gtcaaatgataatgccagcacaacata

a score=23038
s chr3           159552998 2358 + 160039680 TTCAAAGGATAATAACAGAGAAAA----------------ACCAATACA-AGGACAGGAACCACACCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAA--AGAAGACAGCCACAAGA----ACAGAATGCCAACTTTAACAACAAAAATAACAG--GAAGCAACAA-------TTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCA---CAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAAT-GGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCAT---GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGG-AGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCA-CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAA-----------GAAGAACTATTC------------------------AAAGAATTAACCAAACGAGG-----------AGTTGGTTCTTTGAGA----------AAATCAACAAGATAGAT------AAACCCTTAG--------------------------------------------------------------------CTAGACTCAC----TAAAG---------------------------------------------------------GGCACAGGGACA-------------------GCATCCTAATT---------AACAAAATCAGAAATGAAAAGG-----------------------GAGACATAACAACAGATCCTGAAG----------AAATC---------CAAAACACCATCAGATC---------------------------CTTCTACAAAAGG----------------------CTAGACT-------CAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAG----AGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA-------AGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttct
s HiC_scaffold_1 115153459 2481 + 233722169 ttttaaatgtaataacaAAGGAAACATTTAGAGTAGATTCACCAGCGAAGAAGACAGgagtca---------aagaataaaaataaa-----tcaaaaaatgtgAACAATAAGACAGAGACAAAGTAACAAAGAATGtacaaactaacaacaacaatAGTGATAAAAGTAATAAACTGTCTTTACCTACCAGTAATGACTTTGAATGTAATTGGACTAAGCTCCCTAGTTAAAGGATGTAGACTG-CTGAATATCTAAAGTAACAAGACCAATTAT-ATATTGCCTATAAGAAAATCATTTCACATGTAAGGACACAAGTAGACTGATGGTGAAGAGATGGAAAATCATATTCTGTGAAAATGAGCAAGAGG-----GCAAGAATAGCTATGCTTACATTAGACACGATGGACTTCAAGTCACAAAAtgtaacaaaagacaaaaaaagtcacTATAA---CATAAAGGGCACAATTT---------AAATTATACCAATTCTAAATAT--ACGCAATAAACCTTGGAGCATATAC-TAGATAGAGAAAATACTATTAGATCTacgtggagagagagagagtaattCAATAATAGTAGGAGATTTGA---CTCCAGTTTCAGAAATGGGCATATTATCCAGAtagaaatcaaa--ggaaaatatcagACCTAA-----ACTGCTGTCCAGATCAGGCCTCAGAAACATTTATAGAATGTGTCACCC-AAAAGTATAGGGTACACCTTCTTCTCATCAGCACGTAGAACTTTTTCCATGATAGGTTACATGTTAGTATTTGAAACAAGtctcaacaaataaaaata-attcaaaatgagacattaagtattttttt-taccTCATTGGAATAAAGCTAATATTCA-CAGTATGAGAAGTTTTCGAAACTATGTAAGCACCTGGATATTGAACAACATATTATTGAACAATGAATGGGTCAAGGAAAGAATTTAAAAGGAGGTTAATAAATCTCTTAAAACAAGTGAAAAGGGAAGCACAACATACCACATCCTATGTGTGACATCACAGGTATTTCTAAGAGAG--GTTTATAGCAATAAATGCCTGCatcaaaaaatttacaaatatctca----aatagTTTACCATTGCACctcaagaaaccagaaaaacaat--atCAAACTAAGTCCAGAATTAGTGGAATGAAAGGaataataaatatcagagcagaaatgagtGAAAAAGTGACAAAGATATGTAaggaagagtttttttttaaaggcttttagATAGATTAAAAAGCAAGATTCAAATAAAGTCAGAGGTCATAATGGAGACTTTTAAATTTATGTCACAGATTAACAATAGAGATAGCAAGAGACCCTTAGAAATAACCATATGCTAATGTATTTgtcagttttctgttactgtaatgaACACTTAATATAAAGTTTGTTTGGACTCACATTTTAGAGTGTTTGATCCATCCGGATCTGTTGTTTGTAGGCCTCTGGTAGGGAGCAGGAAATCATGGCAGAAAGACATggtggagcaaaactgcttaCCTCCCcatcagaaactgaaaaaaagtgaaaaaagaaagggctggggtctCCTTAGTCCCTTCAAGGGCATGGCCCCAATGACTGAAGTCTTCCCTGTAATTCTTCGCTTCTCAAGTTACCACCATGTCTCAATACTACCATTCCAAGGATCAAGACTTTAACACAAgggcctttggggaacatttcagatctaaactgTAGTACTCAAGAAACTGGAAaacccagaagaaatggataaattcatgAATACAAAAAACCTCCCTaaattaaatcataaataaa-----aagttaaacag----atGATA---AATGagattgaaaaaataatgaaagttctCTTG-------------------TAGAGTAGCTCATTGCTGTATTCTGCCAAACATTTAAGGAAGAACCAGTATCAATTCTTCTGAAATTactacaaaaaaatcacagaggaGGAAATTGTTCCAA---AGTTGATCACACCA----------------TCAAAACCAGACAGAT---GCAAGGATAGTTCCAAACATTCAGATCAATT------------------------------AATGAGATAC----------------------CATTA--------------------CGATTAGAgttaa----aggga-----------------aaatgaaaaaaaaactatgataTC--TCATATTAACAAAATCAAGGATAAAAACCTTATGGTCTTTTCCATAGATacataaaaagcatttgataaaattcaat-ccTCTTCATGATAAAACAAGTCAATTGTAGAA-------------------TATACCTAAACACGGTAAATACCATATGTGACAAACTCACAGTGGACATCATATAGAACGGGAAAATTCTGAAGGTATTCCTGT--AAGTCTAGAACAAGGAGAGGTTGCccacttttactatttttatttggcATAGTACTAGC------------AACAATTAggtaagagaaagaagtaaagtaCTTCCATATTAGAAAGGAGAAAGTAAAACTGTCCTCATTTGCAGGTATCACAATCTTATATAGAA---AACCTGAAAACTTCAATAAAAAA-TGCTAA--CAAATACACAAATGCAATGAAGTTGCAAGATATAAAATCAGCATACGAAAACTGGTAGTGTTTCT

a score=67511
s chr3           159553084 3713 + 160039680 AAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTG----CTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAG-------TGAAAGGCTG-GAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAG-GGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATT-GACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTAT----CAGACCACCATGGCC----TAAGACTGATCTT-----CAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCA-AGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCT-ATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAAT--------AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACT-CTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAG-CATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAG--ATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAA-TGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACC-AGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGA-TAAACAGCTTCGGTAAAGTAGCTGGATATAAAATA-----AACtcaaacaagtcaatggcctttctctata---caaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaa--gaaattaaagaagatctcagaagatggaaagatct---cccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatct---acagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctagga-tagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcaca-taaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaa--aagaccaccaacagattgggaaagg---atcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaa--gaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactg-aacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcag-aatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtgg------agaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatg
s HiC_scaffold_1  76829602 3540 + 233722169 aagaggagtcaGCAATAGGAGAGCAATgc----------------aatgacaagaataagtcaatggTTTTCaataataactctcaatgtgaacAGTCTCAACCCCTGAATCAAAAGACA--AATTGACAGACTGCTCAGA-AAACGATTCCTAACAGTAAGTACACTGTATATAAGAAACCAAtgtaatcaaaaaagaaattcatagactaaaaaaaaaaaatcaaagactacAAAAACAACATTCCATACAATAGGAACtcaaaaaca-----------cttttttaa------acaaaatggaCTTTAAggcaaaactgatcagaagaggcaaaaaaaGGTCATTATATATTGGTTGAGAGAATAGTTCAACAGGAAGAAGTaataattagaaatatatatgcactgaacACTGGTACACTCAC-TTCTTAAGACAAACACTACTAAA-cataaaatatcagataaataTCAACGCAATAATACCAGGGGACCTCAATAtctcactatcacaaatagaccAACTG----GACAGacaatcaacaaagaaatgtcaaaattgaactatattttcaaacaaatggacttaatagataccTTCAAAATGTTCTATCT---agtaacagaatacacattcgtCTTAACAGCACatggaatttttttcaaaataagactACTTACTGCTCCACAAAGTATGCTtcgcaaaataaaagaata--gaaattatcccatgcatataataaatcagacacacaagatcATAATATGATTAAACTAGAAAACAATGGGAAAATAAACCATAGGAA-TTATGAAATACATGAAGATTAAAGAACATACTTCTCAATAATCAAAGGGTCacaagaagaaatcaaggaagaaattagacattCCCTGCAATC-AACAACACTAG---TACAACATACCAGGACTTTATGGGACACTATGAAAGCAATctcaaaagggaaatttatagttgTGAATGcacacatcagaaaaatagaatgagaCCAAATAAATTACCTAATGATGCATGTCAAGTCTT----AGaaaaacaatccaaatcca----aagcaagtacaaagaaggaaattttaaagatcagagcagaaattcataAAACTGATAcgaaaagtaaaatacaaagaaacaa-------------tgactc-------aaactaataaaata----aactgtCAATCCTACTTAAAAAA------AAGGTCAATACC------AATGCAATTACAAATGAGAA---AGACACCACCAAAATTTGTAAGATTATTAGCAACTATTTCTCAAACTTCAACAAAGAATCTACTTCAGTGAAG-TAGATAACC----CATAATAGA-----TTCCTAATACAAATGAATCACCTAAgt-gaatgaagaagatataaaaattctgagtaaCTCATTAACAGACAATGTAGGTGAGAcagtaattaaggaaaaaaaaaactatcaaggaggaaaagcccaggacctgataAATTCATCACTGAGTTCTACAAGAACCTCAAGGATGATCT----------CCTCAAAGACCATT-AACAATGTGAAA--AGAAGGGAGTATTGCCAAACTCACTCC-TGAAGCTAGCATTATCtttattccaaaaccagacaaggactcAACTAAAAAcaagaactacaggtcaatcttatgaatgaacagaaatacaaaaatcctcaacaaggt--------ACAGAATGcaacaatttattaaaaagatcatacatcatgatcaagtaaaTTTCATCCAAGGGATGTAAGGATAGTGTaacatatgcaaatgaataaatatactaGATCACATAAATG--------GcccaaaatcacatgatcatctcaacagacacTTAAGAGGGCCTTTCCCAAAATCTAATATCTAGTCA------AGGTTTTAAAAAGCCGCTAAGAAAACAg----cttatcttaatctgataaaagccttttacaACATACCtcctgccaacatcatattaaaataggaaaaaactggAAG-ATCTTCTCTAAAATCAGGGAAAAGACAAAAGTGTCCTTCATCAtcactcttgttcaatatagttctcaaaaAATTAGTTGACAGCAAccagccaagagaaaga---aaaaagtatatgtaCAGGGAAGAATGAAGTCAAATTATCCTTACTTGCAGATAACGTGATCCTTTAAACAGAAGACCAAGAAAATTCCACAAAAG-ACTCCTGAAACTAATTAAACGAATTCAGCACAGTAGCGGGTTAAAAAATGAACACAACTCAGAAAAATCAA---CATTGTTCCAGATATCAAttaaaaaactcactgaaaaacaaattaagagaACAATACAAttcaaaagaactttaa--aaagttaaatacctAGCAATTAACCTAATGAAAGTCATGGAAGACTTCCATAATGAAAACTGTAATACTGTGAATAAAGGGAGATTTAacaggacattagaaaatgaaatgatatctaCCCGGCCACCTGGATAGACAGTATCAATCTTGCTAAAATGGCCATACCTTCAAAACCGACATAacacagatttaatg-----ccaatcaaaatgtcaacaaaattcctcacagaactagaaaaaccaaccctaaaatttatatggagccAAAAGTTACACAAgactagcaaaagcaatcctgggcaataagAACAAAGCAATAGGCATCACATTCCTGGATATCaagttgtattacaaagctacagtgacagAAATAGGATGATAC------ACAGAAATACACTCCAGTCAATGGAATAGAAGAGAATATATAGAAACAATTCCAGTCAGATtcagccacctgatctttgataaaggggccaaaaaca--catTG-----AAGGtaatctctttaacaaatggtgccaGGAAAATTA--AGCTATC---CACATGAATCTTAA---AGCCTTATCTCTCAgcacatactaaactaaaatcaaaatggatcaaaattctaaacagtaaaac---aaacatttaacctactggaagataaa-caggtaaaattcttgaagacatagg-----------attttctaaacagaaccctaATTATATAAGAAGTCACATCAAGAATC-------------------ATATCAAAAAGTTGTGTACAACAAAAGAGGTAACCAACAGAGCTAACTAAGACAAcatacagaatggggaaaattttTTGTTAGCTGCTCT---TTGGACAGAAGactaatacataaaatacataaaaagctaaaacaaatTTAGACTCCCTCAAATAAAA-GATCTAATCAGAACACAG-----ACAACTGAAATAGATACTACTCAAAAGATGATGTACAAGCAGCCAGTAAATACCTG-AAAAGTCTTCAACATGTCTGACCATTACAGAAATGTAAAGGAAACCAACACTGAAactccatcttattccagaaagaaatggatatcatcaagaaatcaaacagtaggaaatgctggtgaggctggggGTGGCTATAGGGAAGAACCCCTCTACATAGCTAGTGGAAACCTAGAGTAATACaactgctatggaaatcagtagagggatttgtcaaaaactaaaaca-agaaattccatttgactcagctcttCTCTCTCTAGGTATcctcctaaaagagttaaagacatattaCAATGATAAATACATATCCATATTTGTAGCAGTACAATTCAT-TTAACTAAATCTT-----GAAGTCAgatgc--------------atggataaagaaaatg

a score=5764
s chr3           159553120 294 + 160039680 AACAACAAAAATAACAGGAAGCAACA----ATTACTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGA--AACAAGCTGGAGTAGCCATTT-TAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGG
s HiC_scaffold_1 185583315 279 + 233722169 agcagtgagtgtggcaggctgcagcagcccagTACGTGTCTAAAACAACTTTGAAGGTAAACATACTAAATGTCTCAATTAAAAGATACAGTCCTGCTGAATAGATACAAAAACAAGACTCAACAATATGCTGCCTTTAAGAAACTCACTTCACCAGTAAA--------------TAAAGTGAAAGACTGGAAAAAGATAGTACATGAAAA-----TGAAGACCAAAGAGCAGGAGTATCTATTTCTTGTGTGAGGCAATATAGACTTAAGAT---GAActgtaaaaatagacaaaaaaag

a score=32686
s chr3           159553150 2523 + 160039680 CTTTTCCTTAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTG--------GAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACA-AGGAGGGACACTTCATACTCATCAAAGGTA-AAATCCTCCAAGAGGAACTC--ACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGT--------------------GGAAACAGA----------------------------AACTAAA--------------------CAGGGACACAGTGAAACT---------------------------------------------------------AACAGAAGTTATGAAAC--------------------------------------------AAATGGACCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGG-AGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAAC--CCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTA---GCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaa---gtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattca
s HiC_scaffold_1  42973449 2236 + 233722169 cTTTTCTATAATACTTCTAAATGTAAATAGTTTA-----TTAAATTATAAGGCACAGACTGGCAAGTTGAATAAAAAAACAAGACT-AACTTCTTGCCGCCTACAAGAAACACACCTCACTAGCAAAGATATGCACAGACCTAagatgaaaggatggaaaacaacattctatataaatgg----aattaaaaaGCTGTGTAATAAGATTAGCTATATTCATATCctacaaagtaaatttcaaaacaaaa----ttagaaaagacaGAAGAGGCCCTTTACATATTGGTAAAGAAAACAGGCCCACCAAGAAGATATATAACAGTTGTAAACACACATGCACTGAACACTGGTGTATCctgtttcataaaagaaaaattacttgaTATAAAGAGATGCACAGATCCCAGTACAATAATACTGATACACTTCTATAGTTTGCTCTCACCAAAAGATAGGTAATccaaatttattttgtctttttgagacagagtgtcactatgggttcaggttgaccttgaactcactttgtagcccaggctggcctcaaagtcacagtgatcctcctgcctcagcctcccaagtgctaggattacaggtgtgcaccactatgcctggcagtaatctaagttttaaaaatactaataacaaagaaatattagagttaAACTATATCACAGATAAAATGGACCCCAAAAGGCATCTACAGAACATCCTATAC---AACTACAGAATATACATTTTGTTTAGCACCTCATGGACTGTTCTCCAGAATAGGTCATATTTTAGGCTACAAAGCAAGTCTTAATAAATTGAATAATTT-----------CTTGCATCTTATCAGATCATAATAGAGTAAAACT--------ATAGcaagagaaactatgcaaa---------cacatggaGGTCGAACAGTTCACTTTTGAATGGTCAGTAGGTC-----AGTAATAAACCATAGAATTTTTTAATTCatagaatcaaatgaaaatgaaaacacaatttaccagaatctCTGGGATACAGCAAAGAAAGTTCTATGA---AAACTTATAGATGTGAGTGCCTACCTCAAAAACTCAGAGAGACCACA----AATAACCTAATTATGCAACTTGATGTcttaggaaaacaa--aaccaaa-----ctaataGGA---------AGGCAATAAT-AAAATTAGAGATGAAATTAATGGAACagactaaaaaa--------caaaatgcaaggtaAGTGAAATAGTTTGTTCTTTGACAAGATAAACAACATTGATAAACCCTCAACCAAACCAGCCAAAAGAAAGCGAGAGAAGATCCAAATCAAATCTGTTAGCAttgc------aggcatggtggcacatgcctg---------------------------------------taatcacagca------------ctggggagaatcatca------------------------caagtttga--------------ggtcatct---------------------------------------------------------------------------tgGGCTATGTACTGAATTC--------------------------------------------------------aggactag-----------------------------------------------cctgaactacatagtgagacctatcataaaaagaaa-------------------tattattaaagATGT------------TATAAGTCACACCACTGAAATCCA---------------------------TGATCAAGTTGAGTTCGTCcaagggatgcaaggatggttcaacatatgcaaatcaataaatacaat-aatcacataaatagaatcaaagataaaaat--catgatTGTCTCAACTGCTACAGAAAAGAC--TTGACAAAATTCAGCATTCTTTCATCATTAAACCCCTGTAGAAACTAGGTATTGAAGGGTCATATCTCAATAT-ATAAAAGGATATAGATACATAATTAAC--ATATCCAATATCATCctgaaagaggagaaaatgaaattatttcctctaaaatcaggaacaaagcaaAGATATCTGTTCTTACTAGTCCTAATCAG---------TGAAAGTTTAACC------attataaatgagaaagaaataaaatggata--------------------taaaacataactatttgcagacaatacGATCATATACTTAGAAAACCctaaaaatttcaacaaaagacTTTTAGA-GTGATAAG----TTTAGGAATGTATAGATTGGAtatagaattaatattttaaaatt-atagtttttctttACATTGATAAAGAACTAGCTGAGAGAgtaatcaggaaaacaattctgTTTACAATAGCTCTA--------AAAATACTCcag---gaatcaacctaatgaacaggtaaaagacctctacacagaaga----------caaaagaaagaaattgaagaagacactaGAATATGAAATGACCTCCTGCATTCAAAAGTAAGCAGAAttcatattgttaaaatgtccatgtTACCAAAAGCAATCTATAGTCTCAATATGATCCCCACCAAAACTGAAGTGACATTCTTCAAAGAAccacaa-aatcaatactaaaacTCA

a score=77839
s chr3           159553158 3826 + 160039680 TAATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAA--AATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTA-----AAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAAC-TAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCAC--------------CTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGG--AAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTC---TGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaat---agtca-caaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacaga-ttcaatgcaatccccatcaaaattccaactcatttcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa--agtcttct-caaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaac-----ccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattg-ggaaaggat--cattacctatcctaaatcagataggggactaatatccaacatatataaagaactc-aagaaggtggacttcagaaa----------atcaaataacc--ccattaaaa--aatggg----gctcagaa----------ctgaacaaagaattctcacct------------------------------gaggaataccg--------------------------------------------------------------------------------------aatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggta----agaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcactgataagtggatattagccccaaacctaggatacccaagatataa
s HiC_scaffold_1  75496056 3797 + 233722169 tatcaactctcaatgtgaatggtccTAATTCCCCaatgaaaagacacagattggcagagtagatcaagaaacaaaactcaaCAATGTGCTATATTCAAGAAGCACAATCcaaaaagaaatgtacagatta----AAGCTAAAAGGATGAAGAACAGtgttccatgtaacaggaacccagaaaaaggtaGAAGTAGCTGTCTGAATTTTAGACAAAATGGACTTCAAGACAAAACTGATCCAAAGAAGCACAGAA-----------AATCATTATAAGGAagcaattcaacaggaagagctAACAGT-ATAGATATACATGCATTGAACACTGACTTGTCCAACTTTATTAAACATACTAtgggacataaaagatcaga-taaacagcG------ACACAATTATAGTGGGAGACCTCAATA-----------------gtcagatcaattagacaaaaaaatcaacaatgagatATCAAAGATGAACCAAATCttcaaacaaatgaatttaaCAGTTATctacagagtgctccatcc---aacaGCAGGATACATGTTCTCAAAATCATGTGAGATGGAAAGTCACatgagactttctccaaaattGACCACATC-CTGGCTTTAAATCATGCCtaagtatatggaaaaataatctaaattttaCCATTCATATTACCaaatcacagtgcaatgaaagtAGAAGTcaagagcaaaagaaaccacagaaa------------------attaaACCATATCCTCTTGAATAATTGAtggttcacagaagaaat---taaaaatattagaaagtttttagaaataaacaataataccaTTACAGCATACCAGAACATATGTGTCACAACGAAAGCAGTCCT--GAAGTAAGTGGATAGCtctgaatgcccacatcagaaaaacagagcaagttcaAATACATAACCTAGTGTTACACTCCAAGGTCACAGAAAAACAACATCAATCCAA---ATCCAAAGTTAGTAcaaggaataaaattataaatatcagaacagaaatcagtgacattgaaactttgaaaatta--caaacaatcaacaaatcaaagagctggttctttgaaaaaataaaca-----gacaaattcCTACTCAATCATatcaaaataaagagagaaaagatcCAAACCAATCCAGTCAGatacaaaaaaaggcaaaatcacagcagacattgctgaaatccagaagataatTAGCAATTATTTTGAGGatctgtattttaataaattggAGAACTCAGAAGAAGT------ATGTCCCTTACATGCATGTGAATGACCAAAACTGGaccaaga-aaatttaaataccCTAA-AATCCAATAACggacaatgaaattgaagaaatgaaaaa----ctaccaactaagaaaactTCAAGTCCCAGTGAGTTGactgctgaattctgtaagaacttTGGGGAGGATCTAATGCCAAAATTCTTTAAATCCTTcagtgaaatttaaagggaagggATACTCCCAAAGTGACTCCTAGAAGACATCATTATCCTTTTTCTAAAACCAAGAAAGGACTCAACTAATAAAGAGAAGCACAGACCAATCTCTTCAAAGAACATCAATACAAAAGTTCTCAATAAGATACAGGCAAACaagatgcatcaaatcatcaaaaacATCATATATCAAGTATAAGTAGGatccatcccaggaatgcagagatggttcaatat--------------atgtaataca--acacaaacagaagcaaggataaaaaacacattatcatctcaattGATGAATAAAAGCTTTTT--CAAAAT-TAACATTCACTCATGACAAAAA-CCTGGAAAAAT--AGTAATAAAGGATCTtatatcaatctgataaaagccatttatgacaaaccc-tGGCCAAC--CATGTTATACAGAGGAAAATTG--------tcctttaaaatcagaaagaagacaaggatgcCTACCATCACCATTCTCATTCAACACAGTTCTTGAAATATTATCCAGAGAAATCTAGcaagagaaacaatgaaaagaGATCTCTATAAGAGA----GAAGTCAAATTAATATTATTT-CAGATGATGTGGTCCTCTACATAGAATCACCAAAGAATTTCACTGAAAACCATATAGCATTAATTACCAAATTCTGTAGAGTAtcagaatacaaagtgaac----aaaattcaa---cattcctatacacaaataataaactcatcaAAAgag-aactaagaaaataataccattcacaatacaattcattaagaaaaattaaacatttaggaATTGACCTAATGAAGAAAGTGGGACACCTGTACAagaaaaactacagtattctcaa-aaggagatcaaagaagacatcataaaatggaaagacaacccttCTTCCTGAATATTCAGGAT--------TCAAAATGATCATTTTTCCAACACTCATACACAGGTTTTaacacaatctcaatcaaaatgccaacagcaCTCCTCattaaaccagaaaaaaatactactaaaattcatttagaagcagaagagactcagaatagcaaaagcaatcctatgCAATGAGAATAAAG---TGGGAGGCATCACATTCctggacttcaagttatactgcaaagccatattgataaaaacagcatggtactgaccaaaaactgaatatttgaatcaatagaacagaataggGGATGCAGAAACAATTATAGGCAACTCACCTAT------CTGATAtctgacaaagaagccaaaagcATACACAGATGGAAACATAATCTCTTTATCAAATGGTGCTGCT--------TAGCCAC--------acattgaatctagacccatgtctctcatcatgtagtaaactaaaatcaaaacagttcAAAGTTCTAAaggttaaaatagaaataat----ctgctggaagataaaagagGTAAAACCCTTGAACACA--GGTGCAAGCcaggactttctgaatagaaaaaaa-------------taattccaagaatcaacaaataggatcatataaaattaaaaagtttctgcatagaAAATTAagtaaccaacagagtgaaaagataacctttggaatgaggaaaatattctgttaaatatttt---tcagacaaaagactgatatcaagaatacataaagaactctaaACAATTAGATCTCCACAATTGAAGACTGATCAAAAAACAGGCAGCTGAAATGAATGGGCACTGCTCAGAAGAAGCATAATCTGGATACAGGGTGCACATATTTAATCCCAGccctttggagactgaggcaggaggatcactgtgaactTGAGACCAGCCAGGCCACATAGTGAATTCTAAATCTGAATTATATAGGGAAATTacctaaaaatgattttttaaaagtaaaatggccaataaatacatgaaaaaaatgtttaatatccctgattattagagaaatgcaaattaaaacaacactgagattttacttTACCCTAAATAGAATGGATATCATGAAGAAATCAgataatagcaaatgctggtaAAGCCATT----AGGAGGAATATTTCTACATcattgatgggaatgtaaattagtacaaccattatggaatcCAGtacaaaaattcttcaaaaaattaaaactagaaattccgtttgacccaactattttccttctaagtattttcccaaaaga-gtcaAAGTCATCATAGTACAGTGATACACAGATATCCATGATTATAGCAACA----taataacagctaaatcttggaggcagcctgtatatccatcaacagCTGAATAGAT--aacaaatacagtatttatacacaatgatgTAGTACTGTGTCATAACAAAGAATAAa--caagtcatttgtagaaaaatggatacacctgGAGACTATAAtgctaaacaaaataaaccagacatacaagtttaaatatcacatgttctctcttata---------------------caagaaatccaaaatataa

a score=4083
s chr3           159553159 151 + 160039680 AATACCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCT-----CAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAA
s HiC_scaffold_1  12292947 154 + 233722169 aataacaTTCAACATAAATGGCCTCAGCTCCCCAATAAAGAGACACAAATTGGCAGATACAATCAAAAGACAGAATCTGACAGTATGCTAAATTCGAGAAA--CATCTAATAACAGGAGAGAAAAGAATAACAGCATTGCAGTtagaaatgagaaa

a score=25346
s chr3           159553163 1830 + 160039680 CCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAAT--TTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTC------ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAG---------------ATACAAAAATATTGAAATTGTCCCAT--GTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGA--------AACTGAACAACACTCTTCTCAATGATATCTTGGTCAA-----GGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAAAC-------------TGGAGAG----------------AGCACAC-------ACTAGCAG--CTGGACAAAACA--------TCTAAAAGCTCTA-----------GAAAAAAAAGGAAGCA----------------------AATTCAC----CTAAGAGGAGTAGACGGCAGGAAATAA----------------------------------------------------------------------------TCAAAC-TCGGGGGTGAAATCAACCAAGTGGAAA----CAAGAAGAACT-----------------ATTC----------------------------------------------------------------------AAAGAATTAACCAAAC----------------------GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGA--AAAGGGAGACATAACAACAGAT-CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGAT----CAAG----TTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAG--TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGG
s HiC_scaffold_1  89719548 2106 + 233722169 cctatcaata--AATGGTCTCAGTttcacaattaaaagaaatagattggctgGCTGTATTGTAAAATAGATTCCAATAGTCTGTTTCATTCAAGAATCTCATCAAGTGCAAAGAGAAACTGATGTAGTAAAGATACAAGGCTAGAAATCAATACCGTATATACCAATGCCCTCAA--AGCAAGAAGGGGTACTAAtcctatttcaagaaaaaataaacttcaagctGAAATTGCTCAGAAGAGCCTAGGTATTTCACTACACATCAGTTAAGAGAACACTCTAATAGGAtgagataacaataataaatatatacagacTATATATTGGAGTTCCTAACTTCATAAAACACATAtt-gcagaatataaaatattgggcataaatattaaaaatacaatcaT-GTGGGTTGTTTGAATACTCTGCTTTC-TCAA---GCAGATCAACTAGCcaaaaattaaccaaaaatatTAT--AGCTGAGTCACAcccttgaacaaatggacttaataaatatCTATGGTGTGTTTTACCCTATTACAGCAGAATATACACCCTCCTT-GCAGCACATGGGAACTTTCCACAAATGGACCACATACAAAACCAAAAAGCATGTTCAAATAAGCATGtattaagtaaatacaaaacaaTCAAAAACCACCCCCTGGTATACTATCATATCGTTGTGCTTTGAAACTAGGAATTAgttgcaaaagaaaacacagaaaatagacAAAGACTCAGACGTTTGTTAAGTATCCAAAACACCT---aatga-atcacagaagaaattagtaAGAAATGAAGCAAGATATTAAACAATTTCTGAAACCAAATGAGAATGCCAGTATAACACAGCAAAACCCATGGAACATGATGAAAGTCGTCTTGAGAGGAGAGTTTATTGCAATCAGTGTTCACATTATAAAAAACAAGGGCACTCAGATGAATAGCTTAATAGCAATACTTAGCATACTGAAAATGCTAGCAGTCCAGAATCAAacctagtatttttttaaaattttatttaaagagagaaaaaaaaaaaaagcagaacagaacaaagggtagaaataatacacaatttcaaaaaaaataaacagtaagaaatcactagttgataaattacatattgtcatcttagaaatagttgttcaagttacaaaattaaagcataaaaggtgaacattcaaacattgagattgcaaacagttctgttcaaatatccaacaaaaacttagtaatatgcttatcaattctacacacttaaacatacattagttatatcctttagattaCTTTTAACCTAGTGTTATAAGGGAagtcagagaaaaaataataaaactaagacaaaataataaaaatttgaaaagctgattctttcaaagaataaagaagacaGATTGACCCTTAGCCAAATTTACCTTATGAACATGAGAAAAG-ATCAAAGTTAATGCAATTAGGAATGacgaaaaaataaaagcacaacagACATCCACTGAAATCCTCAACGT-----GTTACTATTACAAAAAATCTTACTCCAAAAATGTGGAAAGTATTGGAGACATGAGCAGATACGTAGATACTAACAAACTACCACAAGAGAAACAAGATGTCATAAGAACTGTGAGCAACTAAATAAT--------AAGCAATTAAATTAAGCCAGTGATTAAAAAATTCTGCCTAGTAAGAAAAGCCCAAGACC------------TGAGGAATTCTATAAGACCTT---AAAGGTTGTAAcaccaatattccttaaactgtttaatgaaactgaaatggaaGAAGTGCTTCCAAATTATTTCCTGGAAACCAGCAATACTCTGAtcacaaaaccagacaaagatccAAATAAAAGGTAAAGCCACAAGCCACTGTCTTTAATAAACACAGgttaaaaagtttagaaaagaaat-tgacaaatagaatgcagcaaatcattacaattatcatacatcatgaccaagtagg--ttaTTCCAAAGATGGAAGGATATTTCAAAGTACACAAATCAAT-AATGGAATGCACCATGTAAGCTGAAGCAAGGAC-AAAATCATACGATAATGCCAttacatgcagaaaaagatttggaCAAAATTCACcacaaatttataataaaatctcTGAAGATAATAGG

a score=71624
s chr3           159553193 3721 + 160039680 ATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTT-ATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACA---CAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCT--AAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTA-----ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG--------ATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTA--ATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAA---ACtcaaacaag---tcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatg---------gaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat------gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataacccca--ttaaaaaatggggctcagaactgaacaaagaattct-cacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa--cacattcacaa
s HiC_scaffold_1 110855274 3525 + 233722169 ataCTAAAAACTAGACTGGAAGATTGGAT-CAAAAACAGAACCCAAGAGTCTTCTGCATTAAAGAAAC--ATATAATCAAAAAAGACATTCATAGATTAAAcattaaaggatagaaaacaacttTTCATGTAGCATGGCACTTAAAACAAGCAGGGTTAACAATTTTAATATCAGACATTATAAACT--CAAGCTAAAATTGactagaagagacaaagaaggtccaAACATACTAGTGAAGAGAACAATCCCGCAAGAAGAGTCAACATTGATAAacacatatgcaccaaatgcTAGAACATCTATTTTCATAAAGCAAaaactactgaaattaaaaagtaaaataaacactaGCACAATCATACTAGAGACTTTTAATGTCACACTTGTATGAAGagtcaaataaattaaatataaaacaaacaaataaatgtcaGTTATAC---CACAACTT--TGAACACATGGATTTAATTCATAAATACAGAGTATCAGACCCTGTAAAACAAAA---TATGCATTAGTTTCAGCAACATatggtacattttataaaatagatcacatactagcccacaaaaccttcttaaataaatataaaaagaatttaaattactcCTCTAATGCTATCAGActg---tgaaaagaaaatagaaatcagtgacagaaaaaatttcagaaatgcaaaatttCC-TAGAAAGTTAACAAAATACTACTCTTCATCCAattggtcacagaagaaat-----------ttcaaaaattctgaAAGTT-AGTGAAAATGACTGTAAAATTCAATGAAACATCTGGGACActattaaatcaattctaagataaaatattattgtaatCAATGTTTATATTGGAAAAATAGAGCAAGCCAAAGTAAACAACTTTATTAGAAATCTTAAGATACTTGAAAAATAACAatccag---tacaaaacaaaattaa--ggaatgaaatTATAGAgattagagtagaaatcaataaacttgagacaaaaataactgt-aaaaacattaaaaaatcaaagagcttgttctttgaaagaatacatgaaatagataaGCCTTTAGCTAGACTCACCAa--gactaagagaaaaaaaaatacttatattAAGAGAat----------aaaggtgaaatcacaacagttTT----GCAATCCAAAAGAtcgtaactactttg---aaaaatttataatccaaaaaaataccaaattttgAAGAA------------CTGGTCACATATAAACTTCCAAAACTAAAAAAGATGTCATAAATTTGATTGATAAACTAGAAA---------TAAGTATGGAAATTGACTAAGCAGTAAAAAGTATACCAACTAAATATAGCCCAGGACTTGATTGATTTATGACTGAATTCTA-CAGTTTTTTAGA----ATGTTACATCAATACTCTTcaagat-tttcaaagaaaataaaggaattggAGTACATCTAAATGCAATTGTGGAA--------ACCCTGCTACCAAAACTGGATAAAAACCCAACTAGGAATGGAAACTGTAGGACTGTCTTCTTACTGAACACAGATGAACAAATCTGCAATAAGATATTAGCAAATTAAA---ATGAGCACATTATCAAAAAGATGATACATTATGATCAAGTAGGTTTTATTCCAgagatgcaagaatggttcaataTATATATAAGTGCACAAATGCAATATATAACATAAG-AAGGAGAAAGGTCAGGACCATATAATCATATCA--AGATACAGAGAAATCTTTAAACAATACTCAATGTCTCTTCATAAACAAAACCCTGAAGTAAATTGGTATAGAAAAACCATACCTGAGTGTGATAGA--CTATTTATAAAAAACCAATAGACAGTATTGTACTAAATaagaaaaagctgaaaacatTCCTCTTAAGTTCaggaagaaataaatgatatTCACTATCAAT---TCTTGTTAACAACTTActtgaaatattatttgaaacaacgaagcaaaacaaagaaataaa-gggatacatataggaaaagaGGAACTCAAACTATGATTATTTGtagatattaaaatattgtgCAGACAATACCCAAAGAAATCCA-CAAAATACTATTTGAATTAAGACA-AACTTTAGCAAAGTAGCAGGATTTaagataaaacacaaaaacaaagattCGTTAGCATTTGTGTATACC---AACGagtgggaagagaataaaattatgacAAAAATACCATTCAtagtagcttcaagaaaaatgaaatatctcaGAATTAACCCAATAAAAGGGATGAAAGA-CTTTACAAAGAAACCCATAGTACTGTGAAGGAGGCTCTTGAAatggacatcagaaaatgaaaaaaaaaaaaaaatcccct---cttCTGGATAGATAGAACCAgtattgtcaaaatgaccataattctAAAACTGTTATATGCATTCAATATactcctaatcaaaataccaacagaatAATTTacagatctaaaaaaaa-aacactaaaattcatatagagcTATAAGAGActgagaataacaaaagcaattttgggTAGTAAGAAAAAGGCAGAAGGCATAGTAATATCTGACTTTAAAC--TACTTCA-AGTaa-ggtgataaaaacagcatgacattaaaacaaaaacagatatatGTCTCAATGAAACAGAGGTGAGGATACAGAAACCTTTCCAAACATATTCAACTACTTGATCTTTAAAAAAGTGGCCATAAACACAAGTTGGAACTAAGACAGTTTTCTCAACAAGTGGTGTTAGTGTAACTGGTTATTGGTTTGCAGAGGATTGAAAATGGACCTTTGTCTCTCAccatacattaaattaaaatctaaatgcatcaaagttctaaacattaaaacagaaaagttaaacctactagaagataaaataggcaaatCACATGAAGACATACATGAAGGTGTAGGAAAGGATTTTACAAACAGAATATCAACTGTACAAGAAAGAGCAGCAAGAATTAACAATTGAGATTACATCATGTTAAAAAGCTTTGGTATAGTAGAAGA----GTcagtagagtgaagagaaaacctataAAGTGGGAAAAATTTACCAATTATTCC---TCAgagagaggactaatatctaggatATGCaac-aactcaaaaatat-------------ttaaaccaCCTAAAGTTAAGAAATGGGcccccaaaatgaagaaaatattttacagaggaagaaatacaaatggtaatcaaatatatgaaaaaaattttcaacatctctggccattagagaaaagcaaattaaggCAACAATAATATTCTATCTTTCTCCA------------AACattaagaaataaagcaatatcaaATGTTGGTGAAGct----------------------------ctggtgggaatgcaaactgaaacaatcattgtggaaatccgtatagagatttctcaaagaaattaaattagaaat------------------------------------------------------------------tatatgtatcaatattttaatggcaaa---atttgtaatagctaaatcctgggagcagcctgcatacagATTAACAG-gtagtggataaagaaaacatggtatctATATATAACAGAACACTACTTAGCAATAAAAGTGAGAGACCTGA-GACATT-TGAGGAGAAAGAATGTACCTGCAAAATACAgtgctgagtgaaataaaccagactcacaa

a score=7188
s chr3           159553272 338 + 160039680 AAAAAGACAGACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAA
s HiC_scaffold_1  93732568 320 + 233722169 AAAAAGATATTTGtagactaaaagttaaaggatg-aaaacaatatttcatgcaccaGGACCCCCAAAACAATCAGGGTTAATAATTTTAATCTCAGACATGGTAAACTTCAAGCTAAAATGGATTACAAGAGACAAAGGCGGTCACTGCATAGTAGTTAACGGAACAATCCAGTAAGAAGGGGTAATATTGATAAATATTCATATATCAaatac-------------ttcataaaacaaaaactactcaAGTTAAAGGATCAAAAAACCACTAACACAATCATGGTAGGGAATCTTAGCACCCCACTTTCACAAAgggatcaact----aaacaaaaa

a score=40534
s chr3           159553284 2297 + 160039680 ACTACCTCAGAGT----GAAAGGCTGGAA-------AACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTAT-GAAACAAATGGACCTGACAGATATCTAC-----------------AGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATA----TAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTC---TGAGTGCCTCCAAGAAG----------AAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCA-------CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAG---ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCT-CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAA-TCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGG----AAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTAT--ATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGAT--ATAAAATAAACtcaaacaagtcaatggcct-------------ttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagt---------------cacaaataatata-aaataccttggcgtgactctaactaagga----------------agtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatct-cagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
s HiC_scaffold_1 144250034 2281 + 233722169 atttcttcagggtttttgaaaaatttgaattCTCACAACAATATTTCATGTACCAAGACCCTGAAAGCTAGCTAGTTTAGCAATTTTATTCTCAGACAAAATAAACTTCAAGCTGAAACTGATCAAAAAagtcaaagaaggtcactacata-------------aaaGTTTACAGAACAATCCAATACTTGAAAATGTATACGCACTAAATCCCGAGGCACTTGacatcataaaacaaatactaccgaacataaaagatca-gatataCATCAACAAAATCACAGTGGATGACCTCGATACCCCACTTGCA-CAATG---AGATCAACTcaaccaaaaatcaaca----------------aaaaaaggTCACAGGAACAAACAGACTTAATAGATATCAATTGTAGTAGTACTGTAATAGAGTGTTCTACTCTACTGCAGCAGAACATGCACTCTTCTCAGCAC---acaggactttctccaaaatagaccacagaGGTAATTTAT----------------ATAAGTGTAAAAGACTTTAAATCATTCCATCTATACTATCAGATCTTTAAGcattgaaactaaaaacaaatcgTCAAAGAGACcatgagaagtttagaaactCCTGGAAATTTAACAACACATCCTTGAATAcccaatgagtcacagaagaaatcaaggaaaacaaTGGACAATTCT-AGAATCAAAGCACAATGCCAGTAAAACACATCAGAAC--AAGTTA-ACAAAGAAAGTggtcctaaaagaaaaac--atatttcagTTAACTACATCTAATGTGTAGTCACATTAaac---agtgagctcaaataaacaactttgtGATGACCCTCAAGATATTCAAAAAACAACAATTTAAGctcaaatttaatttaaagagagaaatcacaaggacagaata------------gaaattaatgtaacgaagaccaaaaaaatta--caaagaatcaatgaatca--gagccggttctttgaaaagatatatATAAAAGACCCAGCCTTAGTTAAAcctaccaaagaa-agaaagaaaggacttaTATCAAtgcagttagaaatgaaaaaaaggtgTAAATTAAAAGAGACACAATCAAAATCCGAAGA-----TAGTAACTGCTATGAAAAGTTATACTCCAATGAGTATACAAATCCTGAAGAAACAGACAAGTTCCT------ATAATCATTACCAAAATTAaaccaagaaaacataaaaatttcaaacCATCAAATAACA-----AGCAATAAAATTGATGCTGAAAAATATGCCCTACTAAGAAAAACTTAGTATCTGATAAATCCACCATTGAAATCTACAAGAACTTTCAGGAGATTATAACACACATCCTTCtcaaaatcttcagtgaaattgaaagagaagtaatGTTTCCAAACTCATTTCTGTGCATGAGCGTGACTCTtat-tcaaaaccagacaaggatccaaGGAAAATGA-------CTGACCAATTTCCTTAATGAGTACAGATTCAAAAAGTCCTGAATGAAATATTGGTAAATAGAATGTAACAAATCATGAAACAGATCGTACATCGTGACTGAGTAGGTTTCATCCAGAGATTGTAGGAATGCTTTAGCACCCATAACTCAAAAAACATAGTATGTCACATAAAAAG---TATGAACAAAA--------GTCATATCAATAGACTCATAAAATACTTTTGACAAAACCCAAGACccattcataaaaaaaaaaaaaaaactaaaaaataggcATAGAAAGATTTTACTGCAATTCTTTAAAAACCAGTCATTAAAAAC---TGGCCAACATTGTATTAAACtggaaaaaacagaaagtgtcccctccaaaaccagagag-agacaaggatgcccactatcaccccTCCTGTTCAAAA-AGCACTCAAATCATTAGccagagaaat------agagaaaaagatataaaggatgtgcataggaaaggaaaaagtcaaattattattgCTTTCGGATAACATGATACTTTCCATATAAGATACCTGAAAAACTCCATGAGAAGACTTCTAGAATCAATAAACAAACGTAGCAAGGTAGcaggataaaaaaaatcaacacagaaacATCAATAGTTTGATGGTGCAAACATCTTTTGCACCagtaatgaactcactgagaaagaaattaggaaaacaataccatttacaGTAGCAtcagtgaaaaaatatatatgtaatatatacatatgtagatGCGTCcatatttaggaaataaaataatgaggATAGTAAAAGAATTCTACAAC-AAAACTGTAGTACTTT---GGAAAAAATTGAACAGGACatccaaaatgtgaaaaaatatccCTTGTTCCTATGTAGGCAGAACCAATACTGTCAAAGTGATCAT

a score=41681
s chr3           159553385 2566 + 160039680 CCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTC-----------------CAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTT-CTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATG-TGACACA--------ATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGG-------AGAGAGCACACA-CTAGCAGCTGGACAAAACATCTAAAAGCTCT---------AGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAG----GAAATAATCAAACTCG--GGGGTGA-------------AATCAACCAAGTG----GAAACAA--GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA---------AACCCTTAGCTA------------------------------GACTCACTAAAGGGCACAGGGACAGCATCCTAATTAA-------CAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTA--TTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACC--TTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGT---GACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttga-tcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaa-caattagtgctggcacaactgg
s HiC_scaffold_1 185915450 2554 + 233722169 ctcaaagtattTAAAAAGGGGGAAGATGGGGAGTGCA--ACCACCaggggttcaatccctggcactgcaggaaaggaaaaaaaggcataACAATTTCATATCTATATGAGCCCAGTGTTGGGTCATCTAAGTATATAAAGCAAACGTTAAtggacacaaaaagaaaaataggtagCAATGCCATAATTGTATAGGATTTCAATACTCCACTTTCAATA-TGGATAGATTAATCAGAcaggaaatgaatttaaaaatactggCTTCAAAATGCACGTTAGACAAAATGGACCTGATAGATACACATTGAAACCTCTGCccaaaagcaca-gaaaacatGTTCTTATTTAGTGTAT-ATAGATCATTCTCCAGGATAGACCATGTGTTATGCAATGACAAAATTcctcacaaatttttaaa-atcaaactcaTC--AAGTATTACTCTGAACTACAGTGACTTGAAATTAGGAATCATTACTAAGAGGAACTTTGGAAACCCTACGAGTACATGGAAATTAAGCCGGATGCCACTAAACAGTCAACAGGGCaatgaagaaattgaaagggaaatttttaaaattctagagaaaaatgaacatgaaaacacaacataattgcaggcatggtggtgcactcctgtaatcccagcactcgggaggctgaggcaggaggatcattgcaagttcaagaccagcctgggctacaaagtgagctcaaggccagc--ctgaactgcatagtgagaccctgtctcaaacaggcaaaaataaataaataaaatcaac--agagGGATAGGGGTTAGTTCTGATATTATATAGCATGTTATGGTAACTATATATAGAAGAATCaattatgtatttcaaaacaaCTAGAGAAGAGCTTGAAGATT---CTCAACACagagata----tttgaaaatatgaaaatattagttACCATGATTTGACCATTATGTATTAGAAGCACGTATTCAGTGACAATACTGTGCCCCATAAATAGGTACAATTAGTGCatggcaattaaaaataaataaaatcacaggtAAGAAAAGAGATATAGCT---GATAccatagaaatacaaagaatcatgAAA--CTATTATGAACAACTTTacaccaaaaaattgaaaaatttt-----------ttggCTCCCAGTCATACAC-AGCTACCAAAAATTAATCAACAAGAAGCAGAAAATTCGATTATACCCATAG-----AGAGTAACAAGATTGGGCAATCTTAAAGTCACCCA-CCAAA---------GGACTA-ATGGCTTCACTGTTGAATTCtcccaaacatttaaagaagaacCAGTATAAATTCTTCTCAGACTGTTCCTGAAAATCttagagaaaattatttca---aactcATTCCACAAGGCCAGTATTACTC-AATACCATAAACAAACAATGacaccataaaaa-agaaaactatacatCAATCTCCCTGAAGAACATAATTACAAAAATCCCCAACAAAATCCTAGCACACTGAATTAAGCAACACATTTGAAACATCACTCGCTGTAAACAAGTGGGGTTCATCCCCGGGATCccagaatggttcaacatatggaaatcaatcAACACGATTCATCACACTAAC-AACTGAAAGAC--AAACCCTATGATCATGTAA-TAGCTGCAGAAAAAGGATTTGATAAATGTTAACATGTTTTCATGATTAAGACTCTCAAAAATT--GgcataaaatgtacattttccaACACAGCAAAGGCTATCCATGACAAACCCACAGCTGACATCATACTGAATGCAAAAACGTTGACAAATTTTCCTCTAAGATCTAGACCGAGA-GTGAGTGCCCACTTT-----TACTAATATTCAGCACAATACTACAAGTCTTGGCCAGAGCAATTAagcaatagaaataaataaaagccatatGAATTAGAAAGAAGGAAGTCAAATTGT--TTCTTTGCAGATGACTTGGT----CTTAGAAGTTCAAACCTTAAAGCCTCCACCAAAAAACTGTTGATTC-AATGAACAAACGCAGTAAAGTTTcaggatacaa-------------aaatcagtagcattcctatacactaatagaGAACTCCCTGAAacagaaattaagaaagcaaTTTCATTTATAAGAGCTACCA--AAAATTAGATATCTAGGAATGCATTTACT--AGGAGGTAAAAGATTTCTATACT-AAATctataaaacattgatgaaagaaattgaagaaga-cacaaa------taagATATCCCATATTCATGGGTTAGAAGAATCCATGGTATTAAAATACCCATAATACCCAGAGCAATCTACAGAATCAATTAAATCTCTATCAAAATATCAATGtctttcttcacaaaaataga--gaaaaatcctAAGACTCATATAGAACAGAGAAGACCCTGACTAACCAAAGAG----------------------------AGAATCAC--TCcctgattttaaaacatactaCAGAAGTCTAGTAACCAAAACAGCACAGTGCTAGTGTAAAGACAGACA--CAGgtcaacagaacaaaatagagggCTCAGAAATAAATCTGTGGATCTACAGACAACTGACTTTTTGACAAAGTA-CCAACAGCAAATACGGGGAAAAGAACAGTCTTATTAATTAAATAGTGTGGGGAAAGTTGG

a score=10049
s chr3           159553545 552 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGAT-----------------------------------------------CGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTA---------TGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAA-TTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAG
s HiC_scaffold_1 162323312 576 + 233722169 acacaattatagtgGGGGACATTAACACTGCACTTTCAATATCACACAGATGAAtcagaccaaaaaaaaccaaaccaaacaaaccaaaccaaaccaaaccaaaaagcaacaaacaaacaaaaccacaaagaaa-tatcagagttgaactaCATCTCCAAACAAATGGACTTTATAGATATTTATAGATTGTGCAGCCCCAAAATAACAGCATAAATATTCTTATTAGCAACATGTGGAACTTTCTACAAA----GCCATACAGCTTAGTTATatca-------------atacaaaaa-attaaaataatcccaGGATTATTACCAGATTGGATTGTaatgaaactaa-aatcaaaggcaagagaaaccacagaaatCATGTAAACACATGATTATTAGACAATACACTCTTAAATAAT-----------TAATGGgatacag-aagaaatcaaatacttCATATAGTTAAAGACTAATGCCAGGACAACATACTAGAACCTAttggacacagtgaaagcaatt-taagaggaaaatttattgttatAAATGCCTATGTCAGAAAAACAAAGTGGTCCCAAATGAGTTATTTAATGATGCATCTCAGGG

a score=32822
s chr3           159553613 1867 + 160039680 AACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCA-----CCATGGCCTAAGACTGATCT----------TCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTT---CTCAAT--GATATCTTGGTCAAGGAAGGAAT----AAAGAAA----------GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCA-CACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAA-CAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA-AAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAG-GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG--ATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGT------CTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAA--TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACAT-----TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaa
s HiC_scaffold_1  38614221 1820 + 233722169 aaaagaaaaataaatgagttgaaacaaatttttgaacaaatgaacttaatagatatAAACAG--TGTTCCACCC---ATCAAGAGT---CACATTCTTTTCCATTGCATATGATAGTTTCTCCAGAATAGATCACA-----GTGAATAAAGCATTcctaagaaaatgcaaaagaatgaaaaatttaccatgcatattatcagatcagaGTGCAATTAACTAAAAATCAGTtacaaaaccaaccaacaacaacaaaaaaataataaatccccAAACCATACAGAAactgca-aatattttgaaattaaataagataatttgatgaatcaatgaatcacagaggaaattttaCAGCAGAAATCCAACAATTTATCCAATTAAATGACTATG---CCAATACACACCAGAACTCATG-GCCACGACAAAAGCAGTCCTGCAAGGCGCGGTGACAGTGGTGTGTGCCAC--ATCAGGCACATAGAACAGCATCAAATAAATAACATAGTGATGCATCTTGAAGtcttaaaaaataggaaaatccaA---ACCAAGAGTTTGTACAAGGAAGGAAGTTATAAAGATTTGAGCAGAAATTAacgaaatggaaaattaaaaaatcaattcaaatcATCCATGCTTTGAAgatctggttctttgaaagaataaataaaataaacaaacccttAGTCAATCttaccagaaaaggaaaaagaaaaca--caagttaatggaattagaaatgaaaaaaggtgacATCAGAATGGACACTGCCAAAATACACAAAATCATTAGCAGCCACCTTACAAAAGTGTG----CAAAACAGTGAGAGAACTCAGAAAAAAC----------TCAGACA--TACAAATTCCCAGAACTGACCCACAA-AGACTCAAAAATCTTGAACAATTCACTAACTGGCAATGAAACTAAAGCactaattaacaaataaaaactgCCTACTAAGAAAAGCTCAGGACCTGATGGAATCAcagccaaattctacaagaacttctgGGAAGCCCTAACACCAATATTTTGAAAGCTTTTTAGTTAAaggtaaaagaaagaagtaaTT--CCAAAATCATTTTCAGAAGCTAACATTATCTCAGTCCCCAAACCAGATAAGGACCCAACCTAAAAAGAGAACTGTAAGCCAATTTCTCTATTGAACACATGTGCAAATATCCTTAACAAGATGC-----AGGCAAAGAGAGTGACACATCTTTATAAAAACATCATATACCATGACCGATTCAacttcatcccagggatgtaagGATGGCTCAGCACACACAAATCAAAAGTTGTAActcatcacataaacagaaataagaacTAAAATCTTATGATAATTTCAACAGATGTAGAAA----GTCTAGCAAACTCTAACA-AAATTCTTGAAGAAAATT-------GTTTGGAAATT------CTTtagtacaacatgataaaacccaCTTATGACCTACCtcctgccaacatcatattaaatacgGA-AAGATGAACATCTTCACTCTGTTACCA------------------CCACT---------CTTGTTCTACACAGTCCTCAAGGCATTCGCCAGAGCAATCACACAAGAGAAAGTATTAGATGAGATTCTTATAGAaaataattaagttaaaatagcattatttgcatatgatatGATCTTTTACTTGTAAGATCCAAAAAACTC-ACCAGACTACTCCTAAAACTGGTAACCTCATTCAACagggtagaaata-aaaaaataaatacacaaaaaagaaaagcattcctA-ATAACAGTGatgaactcactgaaaaagaaaggtGGAAATCAATAAAC-TCACAatcatttcaaaaaat-ttaagtA-CTAGTTATGAACCTaactaaggaagtaaaagacttctactttaaa

a score=28435
s chr3           159553646 2033 + 160039680 AAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAA-AATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGA-----ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAA-ATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCC-ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAG--AGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA-ATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaag-----atggaaagatctcccat-gctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctgga
s HiC_scaffold_1  23001666 1857 + 233722169 aaaaaaatggac--AAGAACTATATACAgaatatttcaaacaaaaatgacaaaacat----tcTTCCCAAGAGCACAGACAAATATCTCCAAAATAGAC-Acacactta-----------------aataaataaaagtaatat--aatttATCCCATTCATATTATCAGACAAGAAtgcagtgaaactagaaatcaaggGCAAAAGAAACCATAGCCATTAtacaaaaacatggaaatcaaGTAATGCACTCA--AATAATGAGTGGGTCATAGATTAAATAAAGAAAGTAATTACAGAATTTCTAACATCAAATATTAATGCTGATACTGCACACTAGAAGCAATGGGACAAAACGCAAGTGGCGC--AGAGAGAATTTTAAAGtt-tgaatgcccacatcagaaaagca-AGATAGGCCAAAATAACTCTGTGATGTG----CTTCAAAcactgaggaaaaaaacaa--------acccaaaactagtccaaggaaggaaattataaatatcagagcagaaattaatgattttgagattaaaaaattacaattaatCAAAGAGTCAA--AAAt----------tcatttgaagaaa--agaaatatagaaaaagccTTAGTCAATcttataata----aaaaaggaaatacccAAAACAGAGcaattggaaatgaaaaatgtaagatCAAACTGGACACCTCATAAATAGAAATTATTAACAATTACATT---AAACACCTGTGCTCTAATAAATTGGAGAAGTTAGAAAAAATCGATAGAATCCTAAATACATG--AAGTAtgaaaacagagccaaaaaaatataaatattctgagTAATTTGACAAgtggcaatgaaattgaagcaggaataaaaataatctaCCAAC----ACAAGCCCAGAATATGATTAATTCAGTGCTGGTTTCTACAAGATTGTCATGGCAGATCTGACT-----------------------------------------TGCTC--CTCAAATAATTCCTGGAAACTAGCATTTACATGGTTCCAAAACCAgataaaaatctaaacaaaaagcagaa-tagagcccaatctctttaatgaacataaaatcaaaataatgataataatatacTGGCAAACATAATGCACAAAATCATCAAAATGATCATACATCATAATCAAGTAGGCTTTTTCCCAAGGATAAAACGATGGTGCAATGTACTTAAATTTAATAAACATAATGCATCAc----acaaaagcaagaac-aaaatcaGATGATCATAAAATAAGCC-CAGGCAGAGCCTCTGAC-AGATCTAGCA-TCATTCACGATAAAATGCCCAAAGAAAATAGGTGTAGAAGGATTGTGTCTCAAACTGTTAAACGCCACTTATGAAAAACCAACTGccaaaattacattaaatacaaTTACAAGACAAAATCTTTTCCACTGTAATCAG-----ATACaagaatgttgtttttatcact-cttatttaatacagtcttgaaaatatt---caaatca--tggaagggacaaaaaaataaa-aggatatgaA-TAGAAAAGTGAAG---AACACATTACTC-------------------TGCATGTAA--GACCCCAAAACATTCCACAaaatgactcctaaaattaataaccaaatttatcAATATAACAGGATgcaaaatcaacacataaaattCAATGAAGttt----------------------gtgaaaaagaaattagtaaaataaaatcatgcatGATAG-CACTAAGGACAAATAAATCCTTAG---AAGCTCACTTAAACAAGTGAgagatctatataaggaaaactACAATAATCTgaaaaaaggaatttgaaaag--CACAGCAGGAATTATAGAAATACTTTCAGTGGCTTA---ATAGCTAGAACTGatgaagtcaaaatgaccatatttccaaaactgctatacataTTTAATGAAGTCCTAATTCAAGTAACAA--CAGTATTCtaacaa--tagagaaaaaaattctaaaattcacatgga

a score=10299
s chr3           159553657 583 + 160039680 CCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACC-ATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAG----AAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAA--AAAGGAA-GCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1  96522416 568 + 233722169 CTTGAAAGCTTTGCATAGGATATTTCATCC---AACAGCAGGAAATAGACTTTTCTCAAAAGCACAcaactttttttaaacaatagacCCACAATATAGCCCATAAAGTATGTTTAAaca----caaaaatactgaaataatacAGTGCATATTAATGGGTCATactaaaatgaaatt--------agaaagccacaaaaaagaaactgctcagatCCA--TGGATATTAAATATCATCTTATTGAATAATCAGTGGATCATAAAAGCAATCAaggtagaaataaataaaatagcttcTAGAGTCAAATGACAATGAAAGCAAGACATGCCAAAACCTGTGGGACACCATGAAAGGAGCTGTAAGAAAGAAAGTTATAGCCATAATCACACACATTAAAAGAATAGAAGGATCCCAAATAAGTAAGCTAATAATGCatctgaaaatcttagaaagactaatgaaatacaaat----ctgaaactaataaaaagaaaaaacttacacAGATTAGAGTACAAATTAGTGAAGTTGAGac--tgaaaacaaggaaaaagattaatgaatcaaacagttggttctttaaaagcaT

a score=72847
s chr3           159553664 3249 + 160039680 GATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAA----TAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCT--------GGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTG-AAATCAACCAAGTGGAAACAAGAAGAACTATTCA---AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAAC----AGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATA-GAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTAC-CAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaa--------------------------cttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacac------ctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggaccta-atgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattggg--aaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaa--aaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcata-tatccagaaga---------------tgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
s HiC_scaffold_1  52903767 3081 + 233722169 GATATATACGGAGTATTTTACCCTTTTACAACAGAGTATACATCCTTTTCAGGAGTATAtggtactttttccaaaatagatcacatactagtcCACAAACCAgg-ttaagtaaatataaaagaattaaaattatcctatgcataccATTAGACCATTGtgcaatgaaaacagaaatcaatgacagaagaaaattttaa--aaaggcaaaaactcc--tggaaaattaacaatgtactcctaaacaaccagtggtccacagaagaaatcaaagaagaaagaaa----tttctggAAGTCAATGACAGTGACTGTATAACTCAGTGAAACCTCTGGGACACTACAAAACcaattctaagaggaaaattcTTAGATTTCAATCAC------------------AGAGCACACCCAAGTAAATAACCTTATGGGCAAA----TTTATGATACTCAAGAGACAAGAAACCAACCCCACAccaaa-------attaaggagaaaaattaaa---gagagtGGAAACTGATAAAATtgagactgaaaaaaataaacagtaaaaaatcaagaaattgaagagctggttctttgaaagaatgaataaaatacataagCCATTAGCCAGACTCACCAGGAGGAAGACTTACA---------TTAatga--ttagaaatgaaaaaggtaaaatcacaacagataatttcaaaatccagaagatagtaa----ctactttgaaaatttatGCTCcaacaaattaacaaattttgaagaactggacagatttctagacacataCATACTACTAAAACTAACCCAAGA-------AGTCATAAAAATGCTTATtccaataacaagcaatgaaattgacaCAGTAATAAAAAATCTACCAACTAAGGAAAACCTAGAACTTGataa-ttcactgctgaattctacaaaatcaTTAAGGATGTTACACCACTAATact-ctcaaactcttcaaagaaatttaaagggGATGGAGTGCTCCCAGATTCATTTATGGAAACCAGTGTCCCTGTAATCTCAAAACCAGATAAAGACTAGTTAAA-----AGAAATGTATGCCCATCTCCTTAGTGAATGTAGATGCAAAACTCTTCaacaagatattagcaaatagaat------acaCATTACCAAAAAGACCATACATCATAAC---GTAgttttcatcccagagatgcaggtatggttcaacatacataaatcagtatatgtaatacatcatataaaCAGGAGCCAAGACAAAAACCATGTGATCATATCAGTAGACACTGCAAAGGCTCTCAACAAAAGCCAACACCCCTTTA---------TTTTGAAAA----CGGTATAGGAAGACCATACCTGAATATGAAAAAAGCTAT-TGTGACAAATCAGTAGC------CATACTAAATgtggaaaaactaaaaacattccc-CTAATGtagggaacaagacaaggatgtccactgtttcctcttctgttcaacaaagtacttgaaatattagccagagcaattaggcaagagcaagaaataaaagggCTACATATAGGAAAA---GAACTCAATTTATCATTGCTTGTAAATGATATGGTACTGTACATAGATGATCCAAAGAACTACACAaaaaaaactcttagaattaacAACCAACTTTAGCAGTGtagtaggatacaaaatcaacaca-------cattAGCTTTtgtgtacaccaataatgaacttgATGAGAAgagaattatgaaaacaatatcaTTCATAGTGGCTTCGAGGAAAATGAAACACCTAGGAACTAACCTAACCATGCCAGTGAGggatttttacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaactactGTGAAGGAGAGTGAAGATGACATCAGAACATG----GGTGTCTCCTGTTTCTGAGTTGGCAGAACCAAAGAtatcaaaatggtcatact-------------------tccagtGCAGttcaaatcaaaataccaacagcgtACTTAACCAATCTAGAGAAAACAGccataaaattcatatggag-----------ctagaagagaagaaacaatCCTGGACAACAAGAGTGAAGCAGAAGGCACAGCAATACCTGACTTCAAGCTATA-TACAAAGCAGGAGTGAT-AAAATGGCATGGTACCAGAACAAAAACAGATTCATGGATCAACAGAACAGACTTAAGGATACA-AAACCCATCCATACACATTCAACTACAGT-ATTTGCTCTTTG-CAAAGGAGCCTACAAAATATGTTGGAGGAAAAATATCCTATTCAACAAGTAGTGATGGGAAACTTTATTATT----TGCAGAA-------AATGTACCTTTATGTCTCACCATATACTGAATTAAAAACGAAACtgatcaaagacctaaacattgaaacagaaacattaaatccacaggaagataaaataggaaaaacactT---CACATAGGTttaggaaaggattttctaaac--aacTCTAAT------CACAGAAAAAGCAAGAATGAACAAATAGGATTTATGTCTGATTCAGAAGCTTCTCTATAGCAAAAGA-ATCAATGGTAGAGTGAAGAGGCAACCTACAGAGTGGGGAAAAGTATTGCCACCTgctcc---tcaga----ggactaatatctaaaatatacaaagaactcaaaaaattaatcT----AGGATTTAAAGATCTAGTCATGAAATGCTCCAAAGAAATGGACaca----tcacagaggaagaaatacaaatggccaacaaatatatgaaaaagtgttcaatatATCTGACTGttagtactgttttaatttgtatttgtctaagattccatcttgctctggaaagaatggcaatcatcaaaCAAATCAAACTGAC---AAATCCTGGAGTGGCCATGGTGAAAAAGGG--ACCCcttcactgttgctggaa-tgtaAGTTAGTACAAGCATTATAGAAATCGGTGTGGAGTTTTCTC----AACTGAAATTATAAATCCCATGTGACCCTGCTGTCCCCCTGCTGGGTATCTTCTCCAGAGAACTTAAGGCATCTTACTGCAGTAATTggt---------gcatac----caatgtttatagcagcacaactcttAATGGCTAACTCCAGGAAGCAGCCCATATGCCCACCAACAGAAAACTGGATAAAGAAGCTGTGGTATCTATGCATGATGGAATTCTACTCTGCT-----------------------------------CTGGATGCACCTGGAAAGTATAat-gtgagtgaaataaaccaggcaca

a score=56529
s chr3           159553668 2836 + 160039680 TCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAA-CTCATAGCTCTGAGTGCCTCCA-AGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC-----------------TAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAG--GATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAG-ACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA---TCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATG---AATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAG-------------------CAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAAC--CACATGATCATCTCGTTAGA--TGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG-----TTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGG---------CTGC--CCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgac-------ctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggctt----------------------------gtgctgtaagatcgag----------------------------------------------------------------------------------------------aattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggg--gct----------------cagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaatt
s HiC_scaffold_1 223975016 2809 + 233722169 TCTACACAACAatt---acaacaacaacagaatacacattcttctcaggaatACACgggattttctccaaaatggaccaTGTG-CTACCTATAacacatgcttaagtaaataaaaaaaaactgaaattattccatgcatattatcaaatcat-ataaaatgaaactaaaaatcaatggcaaaagaaatcccAGAAAGTAggcaagcacatggaaattaaacaataccctccAAAAT--------------------AATCAAGAGATAA------------------------------------------------------------------------TTCCTAAAATCaaaagtttatagctgtgaatattcacataagagaaacaagAGTGAGCTCA----AGTA-----ATGAAACCCCTcaaattcttaagaaaaaaaaaa----------tcccaaactagtacaaagaagtaaattatataaagcagaacagaaattaattaaattaagaccaaaaaaac-----aaaaaatcaatgaataagaTAGCcagttctttaaaataacaaataaaatagacCAACACTTACCCAATCTAGCCCCCCAAAAAAGacaattagaaagaaaagaaaaagaa----agaaaatgaaattagaaataaaaaaggcaaaatcagaaCAGACAAAACCAATATCCAAAG-ATTACTAGTaacttt---gaaaacctatattctaataaaatggaaaattccaaagaaatgaatagattattgca----tatgaattaccaaaactggaccaacaaaataaaaaaacc--ctgAGTAATCCATTAACAGGCAGTGAAACTGAAgtagtagttta-------------aaaaaaaaaccaagactaCCAAGGATCTACCTCCAAAGTCTACAAGAATTTTAGGAAAGTCCTTCTAAGGTcaatacttctcaaattctttaatgacgttgaaagggaaggaatactccGCAAATCATCCCCAGATGTAAC-ATTACGCTGATTCCTAAAACCAGAAGAGGATCCaagcaagaaagagaactacatgaCAGTATCTCTAACAGCAAACATGGACTAAAAAATCCTCGACAAGATATTGGTAAATAGAATGCCACAAATCATCAAATATATTTGGTCATATATATTTGGTCATATATCAcgaccaaataggattcatcccaggcgtgCAGGGGT----CAACATAC--AAGTCAGTAAAT----------AAATCAACAGAACCAACgacaaaaatatcacatcatcatctcaatagacatgaaaaaaaaacctttgacaaaatccaacattcattcgtgataaaaaaaaaaccctgaagaaaacaggtat---agaaTTTTACCTCAC--TGATAAAGGCCATTTGGGAGTAACCTACTGTCAACGTCACATTAAATGGGAAAAAGCTGAAAGTTTTCCCTCTAAAGTCAGGTACAAGCCAAGGATTATTCACCTGctttcactatcaccactcttgttTAATAGAGTTCTCAAAACATCAATCAGAGCAATcagtcaagagaaagaaataaaagaggggtaa----gaaagaaagaagtcaaattatta---tttgcaggtgaTAGGATCCTCTATAGAAGAAGC---AAAAGTTCCATGCAAAAACTCCTGGAATTAATACACAAACTGGGCAATGcagcaaaatacaaaatcaacactcgaGAATCAGCGGTGTTCCTGTATTCCAGTAATGAACACACTgagaaagaaagtaagagaaCAACTCCATCCACGAgagcaccaagaaaaattaagtgCTTAGGagttaacctaaccaaggaagtgaaagatctg-------------------------------------aagaggacatcagaaaacagaaagatatcccAT--TCCTAGATAGGCAGAGCCAACACTGCCAAAACGGCCACACgtccaaaactgatacacagatataacacaattccaatcaaaagacCAATAGAATTCCTCACAAAACTACAgcaagcaatcctaaaattcatatgcaagcataagagacccagaatagcaaacacaatccacaaaaccaaagcaa------gagGCCTCAGAATCCCAGACTACAAAGCCACAGTTATCCTACAAAACtacagttacaaaaaaaaaaaaaaaaaacagtattggCAAAAACACAGACATACAGATCAACGGAACAGAACAGAAGGTTCA-AAGCCAGCTCCAGCACGTTCAgctacctcatctttgacaaaggtgccaaaaacaTACACTTAAACA---ActgcctctttaacaaatggtgttgagaAAACTAGCTACCCACAAGTATAAGATGGAATCTAGATCCCT--CTCCCACTATGTACgcaactaaaaccaaaatggatcaaaggcctGAACACTGAACCAGAAACAAT----CTGCTGTAAcataaaacaggtaaaattcttgaaga------cataggtgaaGATTTTCTGATcagaaccccagttgcacaatAATAGCAAACCTACTGTTAACAGGagtggtgagagagagagagagagggtgtcCTTGACTTTCCTGAGTTCAGAGGGAAAGCTTTCCGCTCTTCCCCATGTGACCTGACAGCAGGTTTATTATAAAGACCTACCAAATCAACAAATAGGGtcatataaaattaaacagcttctgcacagcaaagcaaACAACCAACATAGTAAAGAGACggcctacagaatgagaaaaaagt-ttGCCAGCTACATGtcagataaaggactaatatctaa-atatataaataactcaa-agagTGCccct---aaaattaaa-gacccaatcaaaaaatgggcaactggaaaaaaatgggcaactgaaatgaacataTACTTCTca--ggagaaata-caaataattagtaaatacatgaaaaaaatgttcgaTGTTTCTggctatttgagaaatgcaaattaaaataacactaagattccatcttattccagaaagaatgactatcatcaaaaatt

a score=32304
s chr3           159553767 1748 + 160039680 GGCCCAACAGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATG-----GCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAA-TTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAG------------AGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAAT-TAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC---CATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATA--GTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGA------ACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCAT-CAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCA-AACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTA---ACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaat-tagggaaacaacacccttctcaatagtcac-----aaataat--------ataaaataccttggcgtg--------actctaactaaggaagt----gaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaaga
s HiC_scaffold_1  63894705 1661 + 233722169 GATTCAACAAATTATAAAAAGCTGAAATCATATCAAGTATCTTTTCTGACCGCAGTGCAATAACACAAGAAAGA-CTTTAAAAACTatacaaata------------------catagaaattaaacaaaatattccAGAATAACCAATagattgaagaagaaattaagaaggaAACTTAAAAAATTCTCAAA--CAAATGAACACGAAAATACAACATACAAAAACTTATAGAATACAGAGATAGTAGACAGAGATAGTAGTACTGCAAGGAAGCTTGTAGCAGTCAATAGCTACAAAAAGAAAGCACAAGCATCTCAGAC----AACTTATCAGCAAACCTCAAGGAACTAGAAAAATAAGCCAG-------GCTTAAGACTAGTAGAAAGAAAGTAATAATAAAG--------------------ACtagaaaaaatagagac-----aaaaaatcaatgaaacag-----------ttttaaaaaac--ataagattaataACCCCCTAGCCTA--TGAGAaagatggggggggggagaacTCAAATGTAATCAGagttgaaataaaaaaggagataatACAATTGAC---------ACACAAGACACAGTCACTAAAGACTTATAAACAATCATATGC-CAACAGATCTT-ACAActtagaagaaatagacaaaatctTTGACATAC-----GTATCTTAAGTGATtcatgaagaaatgagaaacGTGAATGATACTG----------------------AGTTAGTAATAAGGTCTCTCAtcaaagaaaaagccagaaa-aaatgGCTTCATTAC-TAATTTTACCTATCACTTAAAGGAGAACTAATACCAATTC-ACTTAGATtattgcaaaaaattaaaaatgaagaaattctcCCAAACTGATTCTAGGAGGCCAGCATTATTCTGACTCCAAAATC--AGATAAGaccattaaaaaaagagagaaaaaagtacaggccAATATTCCTGATAAACATAactgcaaaaatcttcaacacaATATTAGCAAACTGAGTCAAAAGA-------------TTAttcatcatgatcaagtggaattcattc-aaGGAGataagaatggttcaacatacacaaatcaatgtaATATGCCACATCGCACCAATATTATGAAAGATCAAAACCATATAAGCATCTCATTAGACACAGGAAAAGCCCTTGATAAAATTCGATATCCTTTCAC---AAAAACTCTGAGCAAATTAGTTACAGAAGGTATGCGTCTGAACACAATAAAGGTCCCACATAACATGCCCCATAGCTAACATCACACTGAATGGACAGAAGCTGAAACCTTTCTCCCAGAAATTTGGATCAGGACAAACATGTCTACTTGCAACATTTCTATTCAACGTAATACAGGAAGGATTAGGCAGCAGAagaattaggcaagagaaagaaatgaaaggcatccaagttaaagagaaaaaagccaaatTGTCActatttccagatgacatga---tatattaaaaaaacct--aaaatttcaCCAT---ACTGttcaa----ataaacaaattcagtaaaattAA-AGATTCAaaac-aacatacaaaaatcagtagtgttTCTATAAACCAATAGTGAATTAtctaaaaaagaaatctagaaacATAATCTCATTTACAACagctacattaaaaataatgaaacgaaacaaaacacacacacaaaaaaaaaacactctgg--GAAGAAATTTTAGAGAGATATCTAccatgaaaactttaaaattcttatgaaagaaattaaaaaaga

a score=32147
s chr3           159553814 3098 + 160039680 GACCACCATGGCCTAAGACTGATCTTCAATA--ACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAAT-CAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCT---------AGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAA-AACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAA----------GTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGT--AGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCA---------ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaa---------caaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattc-atctggaataacaaaaaacctaggatagc--aaaaagtcttctcaaggataaaagaac--ctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagac-actgaaacttatagaggagaaagtggggaaaagccttgaagatatgggca-----caggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaa-gac-----accgtcagtaagacaaaaagaccaccaacagattg------ggaaaggatcattacctatcctaaatcagataggggactaa---tatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcac----ctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacac--tcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggaca-tagtactaccggaggatccagca----atacgtctcctgggcatatatccagaagatgc----cccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaa---cagaggaatggatacagaaaatgt--------ggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaa--tggatggacctggagggcatcatcctgagtgaggtaacacattcac
s HiC_scaffold_1  38267537 2915 + 233722169 GACTACAATGgtatgaaactaaaaattaacagGATGAAACTCAGAACTGTGTATGAATATT----TGAAAGTGTAACAACGTGCTTCTCAACAACAAATTGTTCAAAGAAG-AATGCAGGA-GAAAGTaaacaatattttgaaacaagttaaagtataaaaacaacatgccaaaattaaag-gaagaggcACAAGTAATTCTAAACAGGAACTATATACCATTAAGTGCctacaaaaagggaaaagaaacacttcaaaTTAACAATCTAACTTTGTACCTGAG-Gagctagaggaaaaaaaaaatcaa---acataagag------agggaaggaaataaTGCAGATCAcagcaagaaataaatgaagtagaGACTAGATCAATGGTAGGGAATATTAATAAGACTGAGTGGtggggtttttaaaaacaaataaatattaaaaagacccTTTATTTATTATTAGAGTTTggattaaggaaaaaagagaaatgatatagtaaataaaattaaaaatgaa---tgagatATAACAACTGATA-TCAAGAAATATAATAACA------------TCTGTAAACAATTGCATTGCAACAAGTCAGATAACAGAAACAGAATGG-TGAATTATTTGGCACAAAATCTCTACCAGAAAAGAATGATgatgaaatggaaaatatgaaaacGTCAATA-------ATGAAACAGGACTTTGGAACCATAATT--TAATAATCTCACTGA-AAGGAAAGGTTAGCACTTGATGGCATCGTTGCTGAAGTTTATTAAACATTCCAGGAAGAATTAATGGCAATCATgcttaaa-tatttcttgaaatcaaagataagaaaatacttg--caaattcACTT-ACGAGGCTAGCATGACCCTGATA-----------AAAAGGTACATtaggataggaaagaaaagaaaattgcaggCCAATATCATTAAAGAACATAAATACAAGAATCCTCAACAAAAC---------------ACAACAGTGCATTAAAGGTATCATTCCGTATGATCAAATAGGATTTATAGCTGGGTTATATAGATGGCTTAATACATGCATATCAACAAGCGAGATGCACAGTATTAATAGAATGAAGGACAAAAGTCACATTATCATCGCTATAGAATtagaaaaagctttt--caaaatTCAATGCCCTTCCATGTAAAAAGCTCTGTATGAATCAGGTATCCAAGGAATGTATTTCAAGGGAACTAAGGCAATCTATGGCAACCTCACAGTTA---------TACACAGAAA--------AaccttttcttctaaaatcagaGAGAAGACACGAATG------TTCTCATTTCTATTTCAGAGGAGCAGTGAAAGTCCCTTCCAGAAGAATAAGCATAAAAAATAGGTTAAAAAGCATCTAAAccagaa---agaaagtaaaatggcTCCTATTTGCTGATGTCATCAAA----------------------------------------------------------TCAATGAAGTTGCAGGATA-AAAACTAACATGCAAAATTAAGCAACATTACTACAAACAGACAATGAAGTATTTGAACATTTTGAGCAAGAAA----------ACGACTCTATTGAGTA--cattaagtatttaaaatacttgggaataaattagaaaaatgagcTAAAATATCTCTGTACTCGAG---TAAAACC-----AAaaagtaattaaacagaa---aaataaatagaaagatattcaaCATCCATGAATTAG------------TGTAAAAACATC-AGTATACCCAAAGCAACCTACAG--TCAGTATGATTCCTATTAAAATGCCAGTGTCTGTTCTCatagaaatagtaaaataaatgttaacttttaatataaaatcaCAAAAGACTGTGACCAGCTACAGAAATctt----aagcaaaaagaacaaaccTGAAGCCTTCATACTACCCGATTCCCAAATCTGCCACCAAATTATTTTaatcaagacagtgtgacacTTGAAAACATTCAG---AGCAGCACAATAGAACA------ATCAGCTGAGAACAAAGTTACACATTTATGGCCAACAGATCTTCAACACAGTA-CCAAGATCA--CAATAGAAAAAA-----CTTCTTTAATAACAATTGCTGAGAAAACTTTAATTCAC--------AGAATGAAACCAGACTCTTATTTTGTACAGTATACAAAAGCCAgcttaaaatagataaaagatttaAGCATAAGAAAGCAAACTACTGGA----AGAAAGCAAATAGAAGAAACAAACCTC-------TTGGCATCCTGCTGGGCGA----CTTTGTAGATGACCCCAAAAGCAGAAATAACAAAAGTAAGAGTGGATCAGTGGGATTACATCACA-TGAAAATGCTCTGCACAGAACAGTGACAATTAACTAGCAGAATGGGAGGAAG--TATTTGGAGATTGTACATCTGATAAGATCAGCACCTTATCAAAAACATCT------CTAAATGTACccaaaatacatgaagaactcaAGTTGCTCTATAGCTAAGTAT-AAATAATCTGGTTTTAAAATGGACAATGGA--TAAATAGATATTTTTTGCAAAGATGAGT--TACAAGTTGACTGACGGGTATATAAAAGTGTGTTCAATACTACTAAGTCTAAGGGGTGTGCACATCAAATCTATAATGAGTCACCATACCACTCTCATAGGCACAGTTactatgaaaaagacaaaagacaataaaagttGATAAGGATATGAAGTAAGAGAAACTCTGTATTCCA---TTGGTGGAGATATAAATTGGTACAACCgtcatggaaaacagtatggatattcttttaaaaatgagaaagtacagcTATCACACAGCTTGGCACCTTATACATTT-----GTCTGTACTCATGGGATATGAAATCAGGATGTTACGGAGATGTCA--CTCCA--GTGTTCACTGTGATGTTACCTAAGTTAGCT--AAGCTGTGAGT--TCCATCTGAGACTCAAGAGCAAATAAGCCAACAAATAAGATGGGCTATGAAGATATAAGCATACAGTAGAATATTACTCATTT-CTAAGAAGAAGGCATC-------TTCTTGTGCTAACTTGAAGGAACTTGGAGGACATGATGCTAAGTAAAGTAAGCCAGGCAC

a score=12343
s chr3           159553829 598 + 160039680 AGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAA--ACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGC-ACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTC--ACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC--TAAAGGGCACAGGGACA---GCATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAA----------CAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTC---AACAAAACTGGAAAACCTGGACAAAATGGACAAATTT
s HiC_scaffold_1 121849223 588 + 233722169 AAACtgatttttcatgaaaataaaaacaaa-------tatcagTTAAGTGTTATTGATTATTAAAATACTGTTTAATAATCAATGGATCATAGAAAAATCAGGGAAGAAATTTTAAGGGTTTACAGAGTCAAATGACAATGAGAATACAACATATCAAAGCCTATGGTACACAATGAAAG-ATTCCTAAGAGAGAAGTTCATAGCTGTGAGTGCACTGATTAAAAGAATAGCTCAACCTCCAAATAAATAACCCAGTGATGCCTGTAGAGTTCCCAGGAAAACAAaga---caatccaaatccaaaactagtagaagaaaagaaatgacaaaggtCAGAGTGGAAATTAGTGAAGCtgaaacttaaaaatcaatacaaagaatcaatgagtcaaagagttggttctttgagaga-------------ataaacccTTAGCTGAATATACCATAAGAAGGACAGGGATAGGGGAACCCCATATCAATGCaagtagaaatgaaaatggtgaaatcacaagGGAAACCACCAAAACCCTGAGAATTAAAAGACACTAT-------ttctgtgatagctcagaccccagaataaatccaaagaa---gcaagaaattaagaaattt

a score=12632
s chr3           159553877 859 + 160039680 TGGAAACTGAACAACACTCTTCTCAATGATATCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAA------------TTCACCTAAGAGGAGTAG--ACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAA--------CGAG---GAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAA-GATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACA----AAGATAGAGAACTTCAGACCAAT-TTCTCTT
s HiC_scaffold_1  77585700 816 + 233722169 TGGAAATCAACCAGTATTCTGTTAGATGATCAATGAGTCAGtgaataaatcaaaagaaaaatttaaaaatttcttgaaacaaataaaaatgaaaattcaaaatccacaA-TCTGTGGGCCACAATAAAAGCAGTAC-----AGACAAGTCATGACAGTAAATGCCtata--------------------------------tttaacaaatatgtaaaa-----aaaaaaaaaaggaaacaaaaatgagaactaattaaaaccaaaaaattagTAATGATAAAGAATGAACAAA-----------GATCAGAACAGCAATAAACAaaagagacatttaaaaaataaaatgaaaatgtcagcGAAACAGAGATGGTTGCTTGAAAAGAT----AAAAGTGACAAATTTTTATCTAGATGaaccaa--gaaaaagagagaagacctAAATAAATTGTATTAGAGATGAAAATGGAGATAGTTCAACCAGTACTACAGAAATACAAAGGATCTTTGGGTACTATAACGAACACTAGTATGCCAATAGTTTGGAAAACCTAAAAGAAATAGGTAAATATCTGGACACATGTAAACTACAAAAATTGAAGCAGGAAGacacagaaaatctgaaaagaatgataaaaagtaacaaagctgaatcag-gataaatag-----catttttaaaaagcctaacaCTGGTTGATTTCA---CTGAATGTTACCAAAATTTTAAGGAGCTAACTAATGCCTATTTTTCTGAAACTATTCCAAAGCATTGACATTGA---CAATTTAAT--ACTCACTCTATAATGTTTGCATTGCTCTGATACCAACACCAGACaaagatacaacaaaataaaaaagaaggcaaCAGaccaatattctttt

a score=10609
s chr3           159553958 466 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCA-CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAA---GGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAA
s HiC_scaffold_1 133529731 432 + 233722169 AATGCAAATCTACATAGGACATACTAAAACTTATGGAGTATCataaaagcagtcctatgagggaaatgtATAGTTATtaattcacacatcaggaaa---------------------------acagaacctc--aaacttctagaaaaaaaaaagaacaagtcaaacccaaagcctgtacaagagatgaaattataaa-----gagcagaaattaatgctaaagatactaagaaaacaatacaatgaatccATGAATTGtaaagtttgttctttgaaagaataaataaaattgataaaccatgaaccaacctcatcaaaaaagaggaaagaaaaaacata--aattcaagTAATGAGATATGAAAAGGGGGGAATTGCAACAGATCCTACAGATATCCAGGAGACCATCAATACCTACTATGAGAACCTATagtctaataagatgaaaaac--agaagaaatggacaga

a score=33504
s chr3           159553986 1548 + 160039680 ACCTATGTGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCT-AAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAAC-CAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATT---------------------------------------------------------------------------AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAG--GTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTA-----AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAA----AATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagat
s HiC_scaffold_1  44540947 1570 + 233722169 ACCGGCGGGACCCAGTGCAAACAGTCCTGCAAGGGAGGTTTACAGCTGTGCACACCACATGGGAAAGGC-ACAGGGAGCCCGCATAAGTGACCCGATGGTGTTTTTCGAGGGGCCTGGAAAAACAagaaatccaa---atccaaagctaggacaaggaggaaaattataaagatcgggacagaaatcaatgcaattgagattttttaaaactac----agagTCAACGAATCAAACAGCTGCTTCTTGAGAAGAATAAACCGAAGAGACAAACGCTTAGCCAGCCTTACCCAAAAACGTAAGAAAAGA---CCAATCAGTGAacttagaaattaaaaaggcaaaatcaaaaaAGACACCactgaaattcagattattagtaactactt----GAAAACCTGTACACCAATAAATTGGAGGatccagaagaaatggagagattcctaaATACATGAGAATTACCAAAACAgaagtaagaaaatataaaaatcttgaaTAGGCCAATAACAGGTAGTGAAATTGAAgcaataattttgttttggaattctatattatcatttttatccttttttcattttaagatttaaaaaaattgaaacaataataaaaaaaacctaccaaGTAAGAAAAGCCTAGGACCCAATGAATTCACCAGTGAATTCTACAGAGACTTCAGGAAAGATCTAACAGCCACatgcctcaaactcttcaatgacactgaaagggaagcagtaccc---CCAATGTCATTCCTGGAACAAGCGTTcacctgattccaaaaccagacaaacagCCAAGCACAAAAGAGAACTACGGACCGATCTCTTatatgaacatagaag-aaaagtTCTCaggaaaatactggcaaacagagcACAACAAGTCATCATCAGAAAGTCGTCACACATCA-GACCAAGTAGGCGCCATCTCAGGG---------TGGTTTGATGTATGCATTTAAATCAATAGATGTCATTCaccacagaaacagaaacaaggatgAGAATCACATCAGCATCTCAGCAGGTGCAGAGAAAGCCTTTGGCAAAGTCCAAAGTCTATTCATGA-AAAAACCtagaagaaaacagatataaaagggctttatctcaatctgat-agagccatctatgacaaaccttaTGCCTACATTATATTAAAAGGTGAGagatt--------tctctctaaaatca-ggagtaGA----------CACTCTCACCACTCCTGTTTGACATAGCACTCAAAGCATTAGCCAGATCagtcaggaaaaggaaagaaataaaaggggta-ggATAGGAAAGGGGTAAGTTAGACCATCACCATCTGCAGATGGTCTGATTCTCTATAAAGAAGGGCC--AAAATGCCACCAAAA-----CTGGTACAGTTAACCAGC-TCAGTAGTGTAGGAGGATTCAAAATGAATACACA-AAACCAGTAGTGTTCCTGTACCTCAACAATGAACTTACTGAGAAGGAAG-TGGGAACCCAATACCATTTCCAATAGCgata---aaaattaaacaca--ggaattaacctaaccaagagaGTGAAAGATCTccaccatgacaactacagtacCCTGAAAAGGGAAATCAAGGAGAATATCAGGAAGTGGGGAGAT

a score=15315
s chr3           159554013 865 + 160039680 TAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACTGGAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCTAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCGGGGGTGA---AATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAG---ACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAA--TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAAC------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAA
s HiC_scaffold_1 187840076 856 + 233722169 TGAGGAGAAAATTTATAGCCATGAATGACTTCATCACAAAAACAGAGTAAGCCCAAATAGATATTTTAACCACACACCTCAAAGTCTGAGAAAAGCAAGAATG--ATTCCAAGTAATAGCCAGTACAagcaagaaaattataaaaaatgggagcaagaaaatcaatgaaattgagacaa-agtaattaaatgaagaattaatcatg-gaaatgttcatt-tttgaaggaataaatgaaatagaaaaatcctTAGGCAGTTTATCCATAAAAAAG-------------TCCAAataaatgcaattagaaataaaaatgatgaaatcatAGCGAACACtgccaaaatgaaaaagattatt-gACTATTTTACATA--TCTGGATGCAATTAATTGGAGATTTCAGAGTTAAATGGATACactcctagatacatatgaattctcaaaactgaaccaagaagatttaaaaacactCAATA-TTCAGTAATAGATAATAAAATGGAGGCAGTAATAAAAATACCCTACAAACTAAGAAAACTCTAGGTCTGTAttcattcactgatgaattctcaAAACACTTCTGGTCAAATCTAACACCTATGTATTTCAAGATgcttagtgaaattgaaaaggaaggggTACTCCCAAAGTCCTTCCTGGAAGTTATCAGTACCTcgatttcaaaaccagacaaggacccagtggggggaaaaaaaaagaactgtgtaTCAACTATTTTAATGTAGACAGATGAAAAATTCCTCAAGAAGATACTGGC-AATTAGGGCAACCGAT-CACCAAAGAGATCATACATCTCGACCAAACAGGCTTTATCCCAGGGCCTTGATGATGGTTCAATATAAGCAAATCAGTAAGTGTGA

a score=57650
s chr3           159554057 2400 + 160039680 GAGAGAGCACACACTAGCAGCTGGACAAAACATCTAAAAGCTCTAGAAAAAAAAGGAAGCAAATTCA--CCTAAGAGGAGTAGACGGCAGGAAATAATCAAACTCGGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTT-CTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAAT-AGAAGTAGA-AGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCC-----CACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAA-CAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAA-TAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa--agtcttctcaaggataa-aagaacctctggtgga----atcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgat------------aagggag---------------ctaaaaccatccag------------------------tggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaag----atcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaa-agacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcat--tacctatcctaaatcagataggggactaatatccaacatatata--aagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac
s HiC_scaffold_1 120882408 2349 + 233722169 gaataagcccaaataaataacctagcgATGAACCCTAtaatcctagaaaaacaaaaac---aatccagACCCAGAGCTAGtccaaggaaggaaattatacagatcagagtggaaatcaatgaaattgagacaaaaattac-----aaagaattaatgaatcaa--agttagttctttgaaagaataaacaaaatagacaaaac---agccaatataatgaaaaaggagggaaaaggcctac--atcaatgcaattagaaatgaaaaagatgaaatcacaacagacactgcCAAGATTAAAAAGATTATTAACTACTT-TGCAAAA--CTGTATGCCAATTAACTGGAGAATTCAGAAGATATGGAtagattcctaaatacatatgagTTATCAAAACAGAGCCCAGATTTAA---AAactctgaataatccaataatagacaatgaaattgaaacagtaataaa-aacttaccaactaagaaaagcccaagtctgGATGGATGGACTGCTGAATTTCTACAAAAATTTCAGAGAAGATCTAATACCAATGCTCCTCacgctctttaatgaaattaaaagtagaGAAGCACTC---CCAAATCATTCCTGGAATACAGAATTAACATGACTCCAACATCATACAAGgactcaactaaaaaaaagaactatagaacaatttctttaatgaatatagacgtaaaaatcttcaacaagaaACTGGCAAACTGAATGTAACACATCACTGAGAAGATCATTTATCATGACCA----------------------------TAGTTTAACatactcaaataaataaatgtaacatatcacataaacagaagcaagagcAAAACTCATATGATCATCCCAATAGATGCATAGAAAATCTTTGACAAAATTCATTATCCTTTCATGATTGAAAACACTgcagaaaataggtatagaagaaCCTTATCTTAac-tgataaaagctatttatgacaaacctactgccaGAATCCTATCAAATGGGGAAAAATTGAAACCTTtctctctaaaattaggaacaaaac-aGTCTGCTATGAGCACTATCAGCATTCCTGTTCAGCATAGTCCTTAAAACATTAGcaagaacaattaggcaagaaaaaagaattacaagggatatgtataggaaaagaagaagccaaattataattatttgtaggTGACATGTTTCTCCTCATAAAAGATCTCAGAAACTCaacaaaag-actcctagaatgaATAATCAAATTTACAGATACAGTAGGATACAAAACTCAACACgaaaaaaccaatagcattcctctacactaatAACAAACCCACTGagtaagaaattaggaaacaaataCCACTCATGAAGacaccaagaaaaaataaatacttagg-----------ctaaagaagtgaaagacctctacaatgaaaaatacagtgctctgaa-aaaggaatCAAAG-GGACATCAGAAGATGGAAAAGTATCACCTGTACCTGAATTGGTAGACCCCGTG-TACCAAAATGGCTATATTTCCAAAATCGTTTTATAGATTTAACACACTTCCAATT-AAATACTAACATGCTTCttcaaaggaat-gaaaaagtaatcctaaaatttatatagaaccaGAAGAGCCCTAGAATGGCAAAAGCAGTCTT-----GAGTAACAAGAGCATATAGCAGGAGACATTGCAATCCTGGACTTCATGTTATAGTACAAAATAACAGCGAGAGAAACAGCTTGGTATTAGCCTCCA-ACAGGCATGATGATCACTGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGAACAGAATGGAGGACATAGAAACAACCCCAAACACATTCAACTATTAAATATTTGACTATGAGGCTAGGGGAAATATAGccattcaataaataaattct----------gttatCCATATGCAGAATATTGAATCCAAATCTGTATCTCTTTCCAtgtactaaacaaaaataaaaatggatcaaagaactaaatgctaaaacagaaacacttaacccGCTACAAGATAAAATGTGTAAAACCCCTGAAGTCATAGGTGTATG------------AAACAGAACTGCAA----TTATACAATAAATATtaccaagaatcaataaatgtgacCGTATCAAA--------TTTCTGCAGAGCAAACAGACA--ATCagtagaatgaaaagacaacttatagaatggggaaaatttttgctagctattct---tcagacagaggattaatatctagaatgtataataaagaataaaaaatgagatccaccataaaataaaagacccaat--aaaaGTGAGCAAATAAAGTGAATACACG--TTTCATGTAAATA----CAAATGGctagtaaatacatgaagaaatgtttaacatgACTGACtactaaag------aaattaaaacaac

a score=65310
s chr3           159554160 2747 + 160039680 GGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAA-ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTT-CTGCAC-----AAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACA--------TTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTT----------------GACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCT-ACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGA--AAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg----tatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaagg-tggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaaga--tgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacaca
s HiC_scaffold_1  44987617 2638 + 233722169 ggagtagaaatcaatgaaatggagactaaaataatg--taaaaaaatcaattatttgaagctctggttcttcaaaagaataaataaaataaattagccCTAAACAAGGCTCAC-------------------------ATCATTGCAATTAGATGTGAAAAAGGTGACATCACAGCAGACACTGTGGAAGTC-AGAAGATAGTAA----CTGCTTTAcaaaattatattccaaaaaaCTGGCAAATTTTGAATTAATGGACAGGAGCCCTAGACATATACAAGCTACCAACACTAACTCAGAAAGACATAAATATGCTTAGCAACCCAATAATATGCAATGAAATTTACTCAGTAGTGAAGAATCTGTCAACTAAGAAAAGCCtaggacctgatggattca---cagat--------aacttttacaaaagctttatgtTATGTCACTGTATGCCTTAAGTTCTTTGaagaaattgaag-agatggaATGCTCCTACATTTATTTGTGGAAACCAAAATCACCCTGATCCCAAAACCAGATAAAgattcaactaaaaaagagaactacaagccaatctgt-TAATAAACTTAGAtgcaaaaatgatcaagataat--------AGCAAAT---AGTAGGCAGTTTATTATCAGAAAGATGATACATC------AGGTAGGTGTCACctcagagatgcaaggatgggtCAACATTTGTAAATCACTAAATGTAATATAGCATATAAACAGCAGCTAAGTCAAAA-CTACATGATTGTATCAATAGGTGCAATAAaggcttttttaaataaaggcttttgacaaagtccaacaccgtATCATGAtaaaatttctgaagaaaatagATGTAGAAGCACCATACCTGAATATAATATGGGCTATTTTATATCAAACCAATAGCCCACCTTCTACCAAATTCCTAA---CCCTAAAGATtccccctaaaatcaggaacaagacaaggatgtccactgtcatctcttttattcaatatagtacttgaaacattagccagaggaaTTTGGTAAGAGAAAGACATCAAAGGGATACA---TGGAGGAAGGAATGACTCAAATTATCCTGATTTACAGATGATATAATAATCTATATAGAATATCCCCAAAACCCTACCGTAAGACTTTTAGAAGTAATAGTGAACTTCAACAAGGTAgcaggatacaagatcaacacacaaaaaacatTAGCATTTGTGTATACCAACAAGGAATGGGATGAGGGggtaa-tataaaaataacaccaTTCACAGTAGTT--------TAAAAAGTatctaggaattaatctcacc-aggaagtgaaagacctctac-acagaaaccacagtactctcacagaggagatggaagaggacatCAGAGAACAGGGAAATGTCCCCTGCTCCTGGATATACAGAACCAGCATTGTCACAGTGGCCAGAAC-CCCAAACTGTTAGACAGATTCACAGAAGCCATGATCAGAACACCAGCAGTGTCCttctcagatctagagaaaatgatctgaaaattAATTTGGACCTG-AAGAGactcaaaattg-aaaaagtaatttt--ggGCAAAAGCA--------GGAA--ATTATG--TGACTTCAAGCTATGTTATAAAGCCATAGTGGTAAAAATGGCATGATACTGGAACAAACAGAAACAGGCGTGTAGCTCAGCGGAACCGGACAGAGGGTACGGAAATCTCCCCAGACACACTCAGCTCTCTGATAGTCTACACAGGGGCCAGGATCATATACTGCAGGGAAGACAGGCTGTTCCGCAGGTcgttctgggaaaactggttatctgtgTGC-TAAGAATGAAGCGGGACCATTACCCCTCACCATGTGCTAAGTCAAAat-------ggtcaaagatctaaacattaaa------acattaaagcttctgaaagataaaataagtaacacACTCGCAGACACAGGTG-AGAGTGGGATTTTCTCAACAGATGCTCAATTGCATGAGA---AATAGCAAGAATCACCAAATGGGGTTGTATCAGACTAAAAAAGCTCCgtacagcaaaaga----atcagcagagtgaagacaCCACCTGCA------GAACGGGTTGCCAGCTACTCTG---CAGACTGAGGTCTACTACCTCAAATGTACAATGAACTCAAAAAAACTagaccacctaaaattaaa-gacccagttaAG-----------AGAAATGAACATACACT--TCAtcgaggaagaaataaaaggtcaGTGAATACATGGAAAAACGTTCAGTGTctctggctattagagaaatgcaaattaaaacagtgttaagatcccatctcactccagaaagaatgggaaGAATTAACGATCAA----ACAGCa-atgctggcgaggctgtggtgaaa-aggaACCCTCTTTCAGAGTTTCTGGGTATGTGAGCTAGTACAG-CATCATGGAGatcagggtggagattcctcagagaACCAGAATTAGAAATGCCATGTGACCCAGCCATCCCCCTGCTAGGTATCTCCCCAGAGAGCCTACGTCATCGTACTGCAGTGACACACGCATCCCACTGTTTACAGctgcacaattcataacagctacaTCCTGGGAGCAGCCCGTCTACCCACC-GCAGATGACCGGATAGAGAAAATATGGCGTCTGTGTGCAATGGAacactacttggctataaagaaagacaaattggaGACATTTGCAGGAAAAAGGATGCACCTGGAGAAGGTAATGTTGAGTGAAGTTAGGCA

a score=17032
s chr3           159554178 761 + 160039680 GTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGA------CTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCA---AGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1  95894463 736 + 233722169 gtgaaactaaaaaaaagta--caaaaaattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACCACATTCAAAAGAAACgattattaaaaaaca---------------aattcatacaataaggaatgaaaagggtgaaatcactacagattctgtggaaatttagaagatcaccaatacttattttgaaaacttttacttgcataaaataaaaagcatagaaGAAACAGATAGATTTctggaaacatg--aattaccaatgCTGAATCAAGGACATATAAATTGTTAGAGCAACACAAtgtcaattaatgaaattgaa-caataattaaaaacttactgacTTGTTAAAGCCTGGGACATGATAGATTAACAGCtgaattccaaaagaaatttagaaaatatttaacatttggtCTTCTtcaaatctttaatgaaattgaaagagaatcaatgCTTTCTAAGGCATTTATGGGTGGAAGTAATACAATggtaacaaaaccagagaaagatccaaccaaaaaagagaaaaacatgccAATATCTCTAATGCACAGAGAGGCAAAAATCCTTA-TAAAATGCTAGCAAGCAGAAATCATCTAGAAGT--TTAGAgca---------catgaccaagtgggattcgtgCCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGTACTATACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=16550
s chr3           159554181 758 + 160039680 GAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACC---CTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACAT---------TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAA
s HiC_scaffold_1  95901303 750 + 233722169 gaaactaagaaaatagtacaaataattaatgaattgaaaagtta--tttttgaaacaaaagcCAAAATTTATAAACCACAttcaacttta-tcaagaaaagataattaaaaaaca----aattcatataataaggaatgaaaagggtgaaatcactacagattctgtggaaattcagaagatcaccaatacctattttgaaaatttttagttgcataaaataaaaagcatggaAGAAACAGATGGATTTCTGGAAACCTG--AATTACCAATGCTGAATCAAGGATATATAAAAGCTTAGAGCAACACAAtgtcaattaatgaaattaaag-aataattaaaaacttactgacTTGTTAAAGCCTGGGATAtgatagattcacagctgaattctataagaaatttggaaaatatttaacaattggTATTCTccaaatctttaatgaaattgaaagagaataaatgCTTTCTAAAGCATTTCTGGATGCAAGTAATACaatgataacaaaaccagagaaagatccaaccaaaa-agagaaaaacatgccAATATGTCTAATGCACCGAGAGGCAAACATCCTTTATAAAATGCTAGCAAGCAGAAATCAGAATATCATCTAGAAGTTTGGAGca---------catgaccaagagggattcatgcCAGAAATGCAACTATGGTTCAACACATAAATGTCAATAACTGCACTACACCATAGCAACAGAGTCAAAGCCAAAAACTGTATATTCGTTTCAACAGATGAAGAGGA

a score=10469
s chr3           159554216 671 + 160039680 GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAA-ATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCT-AAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAA----------------------------TAGTCT--------CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA----AGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATA
s HiC_scaffold_1  95326533 669 + 233722169 gaagaactggttctttgaaaaaat-------------acgCTGTTATC-AAACTTACcagtagaaacagaaaagagactcagatgaaaacaattagaaataaaaacggCAA------ACCAAAACTCTACTGAATCCAGAACATAGTCA----CATCtgtgaaaaattatattccagCAAAAGGTAAAACcttaaaaaatatggaaagatcTTTATATTTGTACAAATTAGCAAAGCTTAGACA--ATAAGACAGAAAATTTTGAATAACGCAAAATTAAGTAGctaaattgaagaagtaataaaactaaaactaaaaaatgtttttaaaaactaacctAGAGAAAGTCCAGCTAAGAA--TCACAGGGCTTGATGAATATATTTCTGAATCCTACAAAAGCTTTATAGATATTAGTTATATCAACATATCTCTTCAAATTGTTCCATGAAGTTGAAA----------------CCATGCACTTTGTAGAAGCCAGCATCTGTCTGATCCTGATACTTAACAATGAccccacaaaaaaggaaaactatattcCAGTCTCCTTACTGAACATGAATGCAAAAATCCTAGAAAATATATTAGCTAACAGAATGAAACACATCATCAAAAACGTCATAGGTCAAGACTAAGAAGGTTTCATGCCAGAGTTGCCAGGATGAGTCAGCATATAAAAA-ccacaaatgtaatacaccaca

a score=62701
s chr3           159554237 2666 + 160039680 AATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAA------TAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGA---GTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATAC-GAAAATCCATCAATGTAATC----CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaact--aaggaagtgaaagatctgtatgataaaaacttcaaat-ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcat-ttcttcaacgaattagaaggagca-----------------------atttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaa-----tagaat---tgaagacccagaaatgaacccacacacctatggtcacttgatcttcga-taagggagctaaaac----catccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcat-----tacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggt-ggacttcagaaaatcaaataaccccatt--aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctgg-cggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1 101526179 2590 + 233722169 aaTCAA--AGAGTGAAAAACTTTTAGCCAAACTTACCTAAAGAAAGAAAGGC-----TCAtattaatgcaattagaaatgaaaaaggcaaaattactaTAGACACTGTTGAAATTCAGAAGACAGTAA----CTACTACGAAAAATTGTATTCCAGCAaactgaagaa----------atgaacaaattcctgGGCAAATGCAAATCactaaaactaaatcaagaagcaTTAAAAATTCTGAACCATCCAATAACAAGTAAAAAATTCaaggta--taataaaaaaaataacctaCCAAATAAGAAAAGCTCAGCAGGTGATGGTTTCA---CAgatccattctgcaaaatctgtaAATACATTACAATTCAGATATTCCtccaactcttcaatgaaactgaatgaGAACGAATCCTTCTAAACTCATTTCTGAAAGACAGCATCATGCTGatcccaaaacc---------------agacaaagaaaaCTGAATGCCAATTTCCTCAAAGAATGTAGATG-GAAAATTCTTAATAAGATATTGGCAAGTAAAATGCAGCAAGTTATCAAAAGGATCAAACATCATTACCAAGTTGGCTTCATTCTAGGAGTGCAAGGACAGTTCAACATACAGCAAGACAATCAGTGTAATTAATACACATcgtaaacagaagcaagga-gaaaATGACGTGATCATgccagtagatgcagaaaaaagattAGATAAATTCTGACACTCATTTATgattaaagaaaagtaaaa--taggtatagaaggcCCTTTCTTGAATCTGATAAATGCTATCTATGGCATCTCCATggccaacattatattaagtggggaaaaa-tgaaagccttctctttaaaatcagaaacaagccAAGGATATTCATTAccaccacttctgttcaacataGTGCTTTAAACATTACCTAGAACAGTCAGGCAAgtgaaagtaataaaaagaatgtgtataggaaaggaagaagtcaaattgttCTTATCTGCAGATGACAGGATCCTCTATATAGACTACCCAAGAAATTCCACCAAAAGTCTCCTACA----ATAACCAAATTTAGAAATGTATCAGAATACAAAATTAgcacaaa-aaatcaataacattcctgtacatcaataatgaattcactgagaaagaaattaggaaagtaACAC------TAAtaacatgaagaaaaattaaatatctaggaattaacctaactcCCCAAAAGTGGAAGATCTCTACT-TGAAAACTaccagtactctgaaaaaggagatcaaagagaacatcagaaaatggaaagatatttcctgTTCCTGTATAGGCAAAACTAATAGTGTCAAATGTGCACTTTCTTCAAagctgatatatagatttaatataatcctaataaaaatatcaatatgtatccctcacagaactagaggaaaaaaaaaatcttaaaattcagaaaacaatcctaaattcatatggaaccagcaGAGACTccgaatagcaaaagcaatcctgggcagcaagaacaaagca-------ggaggcttACAACACTCACCTTCAAGTTACATTaca-agctacagtgataaaaacagcaaggttttggcacaaaaacagacatgtagatCACTGGAACCCACTAGAGTGTATGAAGAC----AACTACAAGCACA-----ATTGCTATTTGAGCTTTGACCAATGGGAAGAAAACATAACATTCTTTggaggaaagataacctctttagcACATGGTACTGAGAAAACCGGCAATC--CATATGCAAAGCTG------gacctatatctttcaccatgtactaaactgaaattAAAGTAGATCAAag-gctaaatattaaaacagaagcccTAAACCTACTGGAATATacaatagataaaactcttgaagtcattgttgtaggcaaggactttttgAATAGAACACCAGTTTCACAATAAATAACATCAAGagtcaacaaatgagattattatatcaaataaa-----aaagt-------aagcaaCCAAC---------------AAGAGACAACGTACAgtatgggaaaatttttttttgctagctattcc---tcagacagaggacaaaTAT-CAATA-ATATGAaggactcaaaaaaatcagactccccaaaataaaa-gatcaaattaaaaaaaatgggaaaCCAAAATAAACAGACACTTCTTA---GAAGTATA---AGTGgccaaaaaatacatgaaaaaaaagttcaacatctctGACCACTAGAGGAATGCAAATCCAAGCTATACTAAGAtcctatcttactccagaaagaacggcaatcaccaagaaatcaaacaataacaaatgctggtggggctg-agTGAAAAAGGAGTCCTTTAACATTGCTGGTGGAAACATGAACTAATACATCCCTTATTGAAATcactatggaaaatatttttaaaaattaagaatagtaATTCTATTTGATCCAGGTAtttcccttctaagtatcttcttaAAAGA----------gctaaaaacatcatat-----------tttttAGCAGCAGAATTCATAATAGCTATTCTTAGGAAGCAGACTATGTATCCATGAATGgatgaagggacaaagaaaatgtatt---tttacaaagTGGAATAATATTCAactttaaagaaggataaatttgagacatttgtaggaaaatggatacgcTTA------Agcgtgttaagtgaaataa

a score=28911
s chr3           159554248 2653 + 160039680 TAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAGCATCCTAATTAACAAAATCAGAAATGAAAAGGGAG--ACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCA-AGTTGACCATCTAAACAGTCCCATATCA-CCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTC-CAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA---------------------------TAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGC-AAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTT-----------------------------------------------------TTGCAGATG-----------ATATGAT----AGTAT-----------ATATAAGTGACCCTAAAAATTCTACCAGAGAAC------------TCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtca-aacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaaca-----------------------------------------------------------------------------------------------------------------------------------------------------------cccttctcaatagtcacaaataatataaaat---------------------------accttggcgtgactctaactaaggaagtgaaagatctgtatgataaaa---acttcaaat----ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaa---cattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgc--aaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatc---accgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaa--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tgaacccacacaccta---------------------------------tggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagca----ttttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccg-tcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaat-------gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatg----------ctggcgtggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaa---atcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggta-agaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggt
s HiC_scaffold_1  72102898 3102 + 233722169 taaaaaaattcttattcaAACTcacaaaaagg---agaggaaagaaccATATCAACTAA-TCAgatgtgaaaaagaaattaaatcacaACATATACCCCAGGTGTTCAGAGCTGTATCA----------CAATATG----------------------ATCTAGAAAATATAGACAGATTTTTATACTCATG--AattaacaaaactaaacaaaaaggatatttaaacatttgaaaattccTGTAACAGCCTGTGATTTTTGAGATCTCAGTCAAGGATCTGCTAACTCAAAATATCCCAGTACCTGATGGAGTCACTGCCGAATTTTACAAAAACTTCAAAGATAATACCTCTACGTTTCT---CCAACTCTTTTGGAAAATTGAAATGAAAGGAGGTCTGCCAAACTCCATCTTGGAAACTACCATTATGCTAAtagcaaactcagagaaagaaTTAACTAC--CAGAAAACTATAGGCCGATTTCTTTAATAATCATGGAAGTAAAAATGTTCTACAAGATATTGACAAATAAGATATAACAAATCATGAAAAAGTTCATATATCATAACAAAGTTGGCTTTGTTCTCAGGGa---aaggatggctcaacatacacaaacctatgaatgtaatacatcacat-aacagaatcaaaaataaaaatcac---attatatcAATAGa--cacaaaaagcatttgataagacCCAACATCTGTTTATGATCAGTGGCTCAAGTCCCTGCCTGATTTTACAAACTCTGAAAACAGTAGGCACAGAAGTATGTTATCTTAATTGTATAAAATGCACTCATGGTAAAACTAATG--CAGAATACTACTAAATTGGGAAAACCTGAAAGCATTTGCTGTGATATCAGGAGCAAAGACAGGCTGTCAGCTATCACCTTCCCTATTCAATTTAGTACTCTAAACTTCAGCCAGAGAAACtaggtaagagaaagaaaaaaatgtg-tatacacaggaaaggaaaaaagtcaaatatatatttacttaagaatcaaatagggctggggatttagctcagcagcataaatgtctgcctggcaaatgtgaggttgtgagtttgattcccagtaccagaaaaaaagaaaaaaaaaatcaaacaattccTAACATAGGACAACCAATAATCTACCAAAACATTACTAATATTCGTgttaagaaaaagaggaaaaatattagcaaataaaaaatcaataatgtctCTCCATGCCAACTCCAACCACTgcgaaaaataatttaagaaaatatcactTACATAAGCTTCAAAGAAGTACATAACCGggggtggtggctcacacctgtaatcccagcactcgggaggccgaggcaggaggatcattgcaagttcaagaccagcctgggctacacagtgagctcaaggcaagcctgaactgcacagcgagatcctttctcaaaaagaaaaaaaacaaaaaaagaaaagaaaaaaggaaaaaaattacataacctcagaattaacctaaccaagaaaaagaaaagtgcatACCAGAATATCTACATTAAACAGTAttgtgaacaacaacaacaacaa------caaaaaat-gaaagacatctcTTATTTCTGGATAGTTAGAATTAATAGCATTTTCAAAATGACCATTATCCCAAaattgatatatagatttaatgtagtccaaattaaaatatcaacagtattcctcacagaactagaaata-----tTGCTGAAATTTACATGGAATCAGAAAAGCCACA--------------------AAGAACAAA------TCAGGAGGCACCCTGATCGTG---GATTTCAAGACATTTTACAAAACTACAATGTTAAAAGCATCCTATTACTACCACA-AAATAGACATGCACATGAATGGAATGGAATAAAGGAGACAGAAAGGTCAAGTAAATGAGAATTAGAGGGAAAAGATGGGAAAATGAGAgaagaataagaaaacagaaacaaggcTTTATGAATAAGGAGAAGAGGAGGGAttaaagagagaggagaagaatgGAGaataaagaatcaagaaatatcatgtacaggtgcaaacAGCCTGTGAGTAATGTGatcattattatttctaaattaaaccaataaacttaattttaaaaaaaagaaagttatctaGGGACATTCAGctatctgatttttgacaaagggtccaaaA-TATACACTAGAAAAGTGATAGTAGTATCTTTTAACAAGtcgtgctggaaaaactgtttatCCCAATGCAGGAGATTGAATCTAGAGCCATATCTCTCAGGGTGCACTAccat-aaatcaaaatgaatcaaagatttagatattaaaggagaaacacttcatctgctagaagataaaacaaGCTAAAATCTT---GACATAAGCATAGCTAAGGACTTTCTGAACTGAATTCCAATTGCCCAAGAAACATTATAATGTATCAACAAGAGAGATTATGTAAAA-TTAAGAGTTTCTGCACAGCTAAGAAAACAACTGAGTAAG--GAGACAATTGCCAAT--ATGGAGAAAAGCTGCTAGGCACTCCTA----GGACAGAGAACTAATAACTgaaatgtataaagaactgaa-aacttaGATGTGTAAACATTTAA-GACACAATCAAAATATTTGTTACTGAAATGAAtggatacttctcaa--aagaaatgc--aattcc--agaaatatatgaaaaaataaagccaacACAAGATTTTTgg-ctttagagaaatgcaaatctaaACAATACTAAGATTCCATTTAACACCTGGAAGAATGGCTGGCATCAAgtactcagaaaaaagaaaaagaaaaattaatataacacTAATGAGGCTGCAAGGAAAAGAATTCTAAATTATTGGCAGGAATGTAAACAAGTACAATCATTATAATAACCATCAGTATGAGGAGtccttaaaatagtaaaaatgacaATTCCATTTTATACAGTTATTTCTCT-CTAGGTTTCTTCCCACAATGGACTTCATATTGTATTGATATGTATATGCTA----ATATTTATATCAACACCACTCATAATTGGTACATCTTGAAACTGCCATGTATACCCATCAGCAGATGCAT--ATATAAAGAATGTATCATGTATAAACActgaagtactactcagtcataagcacggatatatttgagtcatttgtaggaaaacaaatCTATCATAAACCCATAATACTAACTGAAAT

a score=41727
s chr3           159554301 1697 + 160039680 AACAAAATCAGAAATGAAAA-GGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTT---GACCATCTAAACAGTCCCATATCACCTAA-AGGAATAGA--AGTAGTTATTA---------ATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGA-TCCAACACCCATTCATGATAAAAGTTTT---------GGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaaga--tctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgcca-aaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa--agtcttctcaaggataaaagaacctctggt-ggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttg
s HiC_scaffold_1 167461759 1657 + 233722169 aagagaaaaagaaaagaaaacaggtgaAATCATTGTGGACACTgtcaaaatcaagaaaaattttaGTAACTACTTTGCAAACCTATATGCCAATAAAttggaaaactataaaaaaacGGA----TTCccagatatatatgaattatcaaaattgaaccaaga--aggTTTTAAAACCCTAAAAAAATCCAgtaacaagcagtaaaaataaaccagtagtaattataataataaaaaacctatcaactaagaaaagcccaggagctgatggattcattgctgaattttacaaaaaaactCAGAGAGATCTAACTCCAATTCTTATTAAGCTCATTAATTAAATTCAAAGGGAAAGAATACTGCTAAAGTTATTGCTGGAAGTTAGCTTTAccctgatttcaaaaccagacaagggcctaaccaaaa-agagaacttacaggccaatctctttaatgaacacatatgcaaaaattctcaa---gatgctggcaaacagaattcaaAAA-------------GTATATATCATGACCAACTAAGCTTCACCCTAGGGATGTAAGGATGGCTCAATAAATGCAAAgcaacaaatgtaatacattacataaatagaagcaaagacaaaaaccacacgACCATcccaa-agacacagaaaaggccTTTGACAAAAATCTAACACCCATTCATTACAACTCATTTATGCACAGTGAAGAAAACAGGTACagagagatttcatctcattttgataaa-gccacttatgacaaacctactgccaaTATCACATTAAATGGGGGATAACCAAAAGCTTTTCCTCTATAATCTGGAACATGGCAAGGATATCCACTACCAACACTCCTTTTCAATATTGTACTTGAAATATTAGTCCAAACAATCAGTAAAGACAAAG---TAAAGAATATGCA------TAACAAACAGATCAAATTATCACT------AGTTGACATGATCCTCTC------AGACtccaaaaattctaccaaaaaaaTT----ACGGAATAACataattcagcaatgtagcaggatacaatcCACAC---AAAAATCCAGTG---Ttcttgtacaccaataatgaattcactgaaaaagaaattagtaaaaaaacaccattcacaacagcatcaaggaatat-taatacatagaaattaacCTAATTAAAGAAGTGAAACACCCCtaaacaatgaaaactacagtactctgaaaaagggaaTCAAGGAGGA-CAATGAAAGTAGAATAATACCC--TTTTACTGGACAGGCAGAACCAATACTGTCAAAATAGCCGTACTTCCAGAGATtgacatacagatttaatgcaat-ccaatcaaaataccaacagcatgcttcagaaatatggtgaaaacaattttaaaattaatttggaactcAAAGAGACTCAAAATAGTAAAAGCAGCCTGGGTAATGAACAAAG------TGTTAGGCAccacaatcccagacttcaagttacattacaaagctacagt-ataCAAACAGCATGGTAgtagcacaaaaacagacataaagATCAATAGGACAGATGTGAGGAAGCAGAAACAATCTTAGACCTATTCAGCtatctgatatttgacaaaagagccaaaaacaTATACTCGAAGAAAGCCAGC---CTCAAAA--TAgttttgggaaaactggctatccgtATGCAGAGGATTACACCTATATCCATACTTATCACTGTG

a score=22538
s chr3           159554342 880 + 160039680 TGAAGAAATCCAAAACACCA--TCAGATCCTTCTACA-AAAGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATC---AGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGA---AGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAG--AACACATTA---AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATA
s HiC_scaffold_1  66567775 862 + 233722169 TGAGGGAGACGAAATCACCAATTCAGAACATACTACTTCAAAATTATATCAcaacaaattaacaaattttaaagaaatgcatgGATTCCTAGACGCCTAGTGACTACCAAAACTAGCCCTTGAAGACCAAA---ATATGCTTAACAACTCAGTAACAACCAATGAAATTGATAACATAGTCATTTATTAACTTA-----AATAAAACCCAAAGACATGAtgaatttactgctgaattctacagatCCTTTGAGCATGTTATATCACCAGTATTCCTcaagttcttaaaaaaaaataaaatggtaga-atactcccaaattcatttatgGAAACCAATGTTACCCTGATCCCAAAACTGGATAAAGAACTAACATAAA---AGAACtgtaggccaatctccttaatgaattTAGGAGCAAAAGTCTTCAGCGTGATCC-----AACCAAATACAATGTAGTacattatcaaaaagatcatacatcatggtCAACTaggtttcatcccagagatgcaaggatagttcattatacacaaatcaataaatgtagtacagcATATAAAGAGGagcaaagtgaaaaaaagtaTGATTTTATCAACAGATACAAAAAAGGACTTCAACAAAACCCAACACCCCTTCAGGATAAAAACCCTAAAGCAAACATGTATACAAAGACCACACCTGAATAGGATAAAGGGTATTTATCATAAACTGATatccagaatcatattaaatggtaagaaactaaaactattatgcctcaaaaca------agacaaggatatccactatcacctctTCTATTCAGCATAATACTTgaaa---cagccagagcaatt----agttaagagaaataaaaatgatatatat--gaaaggaaaaactcaaatta

a score=34427
s chr3           159554347 1912 + 160039680 AAATCCAAAACACCATCAGATCCTTCTACAAA-----AGGCTAGACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAA-TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAA----GATCAGGAATTC------------------------------------------------------------------------------------------------------------------------------AAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgat--------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctc----cttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatc-attacctatcc
s HiC_scaffold_1  55056159 1719 + 233722169 AAGTCCAAATCTCATTCAGTATCTTCTACCTATCCTTAGATAAGACTCAAAAAGTCTCTATAAC--------AGTTG------TTGTGAATACATATCGcttaccaaaaccaaaccaaga-agACTTAGTCTTCTAA---------------CTAAA------------------------CTTCCAACTAAAAAAAGCCCAGCACCAGATAGAGTCATTGCCAATTTTCCTAAGAACTTCAGGGACGATCAAATGCCACTTCT---CAAAC--TTTAATGAAACTAAAAGGAAGAGAGGACCCA-CAAAGTCATCc-------ctagcattaccctgattccaaaaccagacaaggatccaaccaaa---------tccaggccaatctctctaacgaa-------------------------------------caaat-caacaaatcatcaaaaagattacatGCCATGACTAAGTATGCTTCATTCTAGGGATGCAAGGATGTATCAATACACT--AATCGATAAATATaattcatcacataaacagaagcagagacaaaaatgacacgatcatctcaacagatgcagaaaaggcctttgacaaaatccaatatccaTTGAGGATTAAAATCctgaaaaaaggggctggggatttagctcagcggcctaagtacctgccttgcaagcaggtggtcgcttcaatccccggtacctataaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcctgacaaAAATACGTACAGAAAGACcttacctcaatctaataaaagccatttatgacaaacttactGCCCATGTTATATTAAAGGGGGgaaaactaaaagctttcccgttaaaatcagaaataaagcaagggtgtccactatcaccactcccatGGAACACAGTTCTTAAAACATCAGCCGGAGCAATGaagcaagaaaaag-gaaaaaagggataaaggtaggaaagaaagaaatcaaattattattatttgcaaatgcTACGAGCCTCCACATAGGAGgacc-aaaaattccatcaaaagactcctggagttaataaacaaattcagt---ttatcaagatataaagtcaacacacaaaaaccaatagcatttct---------AAATAGACAG--------------------------------------------------------------------------AACCAATGCAgt----------------------------------------------------------aaaaaatgacaatatttccTAAACTCA---------------------------------------------------TATacatttaacacaatcccaaacaaaatatcaacagcattcctcacagatgtagagaaaacaatccaaaaattcat---aaaaaacaagaaacata--atagcaaaagaaattctgggtaGCCATAGTAAAATA------GGAGGAATCACAAT-CCAGATtcgaagttatattacaaagctataatgatttttttaaaaaaaaagcatggtactggcacaaaaacagacacatggaCCAATGAAATAGGgtagaggaagcagaaacaaccccagacacatTGAattacctgatctttgacaaagcagccaaaatcatacactggaggaaaaacAGCCTCTGTAGTAACTGGTG-TGGGGCAA--GCTGATTACCACACAGGGAGAC-TGAGTCGGCAC-TCCTCGTGTCACAGCCTGTACTTAGCTAAACTCAAAATGGGTCCAAGACCTAAATGCTAACACAGAGACATTTAcgctgctggaagataaaacaggcaAAACTCCTGAAAACACAGGCATAGGCAACAA---CTCTAAGGGCACCAGAAT-----------TAATGtcaagaatcagcaaatgggatcacatcaaattacgaggcttctgcacagcaaagaaaacaaccaacagagtggaggga----caacagaatgagaaaaattctaCCAGCTATTC

a score=12120
s chr3           159554394 1361 + 160039680 AAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA--AGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAG------GCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa--agtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacct
s HiC_scaffold_1  45014900  985 + 233722169 AAATTGGAAAATCGAGACAGAATAGACAAGTTTCTGGACACATACGACCTACCAAAATTGAAC----ATAAAA------ATCTGAATAGATTAATTT---ATAGGTAACTTAAATCAGCAATTATAAGCCTCCCAA-CATAGAAAACTCAGGAC--------TTTAGTATTGAATTTTACCAAAC------------TTTAACCCCAG-CATGTGCAGATTATTGCATAGAattgaaa-agaaatcatttaa---aactTGTACAATGAAGCCAGTATTACCCTGGTGC------------------------------------TAAGACCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTCAGAG---------------------------------------------------------------------TAAATTAGTTATAGAAGGAT---------------CATGTCTCAGCATAATAAAGGCTACATATGACAACCCA-CAGGCAACATCACCCTGAGTGGAAA--AATGGAAAGCACTTCC-CTCAGCCCGGGAACATGGCGAACGTGTTGTCGCTCACTTCTCTTCCA------TAATATGATGGTAAAAATTTCAGCCAGAACAGTTGGACAAAAAAC----ATGATAGACATACAAATAGGCAAGGATGAAATCAGATTGTGGGTGTGTGCAAATGGTATGATTCTTTACACAGGAAAAGCC-AAGGCTCCGTTAGAAGACGACTGGAATTTATAAA----TGCAGCAGAGCAATAGGACACGGCAGTAGCATTCCGAAGCCAGTGGCTTTTCTGTTCACCGGTAATGAAT-TGCTGAGAAATAAAGCACGAACGTAATCCAATTTGTAGTAGCCACAAAAGG---AGAAATTCTAGGAATAAACTTAACCGAGGAAGTGAAAGGTTTCCACAATGAAAACCATAAAATTCTGAAGAAATAAATTGAAGGAGAC----------------ACTTCTCGTCTTTATGGATTAG------------------AATAGTTAAACTGTCCGTAGCA--CTACAGATTCAGTGTGATCCCCATCAAAATATCGAC---ATTCTTCGTAGAACTAGAAAAAGATCCCTG-AAATTCACATCGAACCACAAAAGGGCTCAAAGAGCCAAAGTAGTCTtggaaaaactaacaaaaaagttGAAGGCATTAAAATACCTGATTT

a score=21004
s chr3           159554413 694 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGGAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA-------------------------GAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-------AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACA
s HiC_scaffold_1 111277613 723 + 233722169 aagtcaaaagactactagatacatatgaattaccaaagttgaatcaagaatatataaaaattctaaataactcaatatcaataAGTGAAATtagagatgtaattaaaaacctatcaacaaagaaaagcccaagccctgatggattcactgttgaattctacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcgaagaCTTTATatgactacttctcaaactctttaattaaattgaaagggaagtaacaTTCCCAAATTCCTTCCTGGAGACAAGAATTACTCTGATTCTAAACCTAGAGAAGAACACAACTAATAAAGAGAATTGCATGCTAAATTATCTAATGAACATCAATGTAAATGTCCTCAATAATATACTAGCAAACAGACTGTATCGAACTgtcaaaaagattgtacaccattGCCTAGTGGGATTTATCACAGGGAtacaaggatgattcaacatgc-aatatccataaatgtaatgcatcatattaacagaaacaaggacaaaactTATATGATCAactcaagagatgcagaaaaagtttttaataatgtTCAGCATCCAttcgtgattaaaaaaaaaaaacctacagaaaattggagtagatggtcatTGTTTCAACCTAATAAAAGca--ctatgacaagccaacagccaacatcatactaaatgcacaaaaacttaaaacttttcctctaaaatcatgaacaagaca

a score=32008
s chr3           159554485 2017 + 160039680 CCATATCACCTAAAGGAATAGAAGTAG-TTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT---GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGA------AGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCA-TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTA-----CCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgggg-aaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaat---gggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaaca-gattgggaaaggat-cattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaa
s HiC_scaffold_1 122040671 1899 + 233722169 CTAGATcacaaaaagaattagaaaaaggtTATTATTAAT-----AAGGAGAATAAATCAGGAATCTAAAATCTCTGGCCAAAGAAAATTCtatcaaatatttgaagaaa---tagaacCAATTCt---caaacttttccaaaatatagactaggaaaaaataagtacatt--ttgATTCTTCCTATGGAACCGGCATTACtatga-aatgaaagcaaaaaaaaaggcaTCATA---ATAAAACTATAGAACAATATTCCTTATGAATATCTGTgggaaaattctcaataaaatact-gcagTCTGAATTTACCAGCATATTGAAAACATGATACAGCTTAAACAAGTGGCATTTATTTTTGGAATTCAATGATGGTACAGCATATGAAAATCAGTCAGTGTAATGTGTCCCATTAacagaatgaaggggaaaaaatcacATGAAGATCTTACTTGAGGCAGAAAAGGCattacacaaaatgaaatactcTCTCATAATCA---------ACAGCATAGGAATTGGAAGAGAATTACCTCGACTTAATAAAATCCATACAT-GCAAAATCACAGCAAACATTACATGCACTGAGCCAGGACTGGAAACTTTTCCTCTaacatcagtaaaaaaaaaaatct--ccagtttttattt--cttttcaatatagtactagaagtttTCAAGAGagcaattag------gaaaaaaataaaaagtaccaaGATTGACAAGGAAATAGACA---------CTTTTATAGATCATACGATCTTACA-------------GAAAATTCTGGCATTTCAAATAATAcagataataaataaac---------aaagtagtAGGATACCAATTCAACACACAAAAACCAGTCGCATttgtaaacaataaaaatgaactacctacaaagaaaattacaagaataatttcatttataatat---------acGTAAGATTCactagcaaaa---gaaataatataatgaaata---gtataatgaaaactacaaa-cattgctgaca-aaattttaaaagacataagTAAATGAGAACACAGCTCATGGTCATGAATC--TAGACTTAATAATCTTAAAACATCAGCATTACCCAAAGCAATGTATAGAGT------------TGTCAAAGTTCCAATGAGGTTttatacagaaacagaaaaactcatactcaaattcatttaaaatttcaagagACCCTGAATagtcaaaacaatcttgaaaaaagACAGAG---CTAGAAGATTCGTATTTCCTGATTTTGAAACTTACTATGAAACTTCAGTAATCAACACAGCAAGGTACT------GACAAAGGCAAGCATATTAATTGAGCAAAACAGA--GCCGAGAAATAAACCTTTATATGTATAGTAACATGATTTTTGACAAGT--GTCAAGAAAATTCAATTG-----AGAAAGCTGTTTTGACAAGAGGTGCTGGGAAAAATGACTACCCactcacaaaagaataaaatcagattCTTGCCTAAtaccatatataaaaatttactcAAAATAGACCAAAGACCTAGATGTCAGacccaaaactataaaatttttagaCGAAAGCATGGGTCCAAAGCTTTACAACACTGGGTTT--GGCAATGATTTTTGAGTACAATCCCTAAGGCACaagcaacaaaggaaaaaaacaaaaaatacagagactca--gaaattttaaaact--tgcacATCTAAAGACAATATCAATAGAGTAAAAGGGCAATGCACgtaattaagaaaatatacataa---atcataCATCTGATGAGGAACCGGCATTGAGAACTCCTTAA-AACTCA-----GTTGCC--------ataaaacaatccaaataaaATCCTGGACAAGGACTTGCATAGATATTCATCCAAAGAGGACAGACTACTGACCAGAAAGCACggaaaaagatgttcaacattgTTAATCACTAGGGAAACGCAGGGCAAAGCCATAATGAGACACCATAATACACTTATTATGATGGTCACtgttaaaaa

a score=24637
s chr3           159554500 1469 + 160039680 GAATAGAAGTAGTTATTAATAG----TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA----AAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACC---CCAGAAAGATCCAACAAAGATAGAGAA------------------------------------CTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAG--AAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCG-GTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaa-taatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgc--ctgacct-aaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaaga
s HiC_scaffold_1 171641976 1372 + 233722169 GAATAAAGCTGatcagtaataaaaatttttccattaaaGTAGAGTTTAGGACTTGATGACCTCACAACtgaattcta-aaaatattaattttaaaaagtactagtACCAATTTTTCTCAACATAT---AAAAAATGCaaaggggaaa-attttttcaaACTTATTTTATGTGACCAGCATTACTCTGACATTAAAGCTtgacaagaaaaaggaaaggaagggaaaggagaggaggggaaagaaggtaggaaggaaaagaaaagactggGGGCCAATATTACTGGTAAATATAGA-GCTAAAATACTCAGCAAAAT--------ACCAAATTCATCAGGACATTAAAAGATGCACTTACCACAATGGGATGGGTTTCATTCCAGTAATGCAA-----------CATACACAAAATAGTAAATATGAAACAGCACATTAACAAACTGAACGACAAAAACCATATGGTCATCTC---AAATCCAGGGAAAAAGCATTTGAGAAAATTCAACATTCTTTTATGattaaaagtttcaaaaaattAGGAATAGAAGGAATGCagctcaaaataataaaggctgTATATGAAAAGACTACCATTCACATCACAGTCAACAGAGAAAAGTTGAAAACTTTTCCTCTAAGATCTAGGGCATGAGGAGAACACTTATACTCACCATGTCTATTCAACACAATATTGGAAATCCTAGAAAGAACAAGTAGGCAACAGACAGGAAGAAAATGTAtctaaagcagaaagaaagaaactagattGCCCCTATTTGCATATTACCTCATCTTATATGCAGAAAACAGTAAACACTCCATTAAAAAACTGCCAAGACTAgtaaaaaatttttcattaagttgcaggatataaaatcagcatTAAAAA---AATGACTACTGTATATGCTaat----------------cagaaattaagaaaacaattccaaTTACCATAGCATCAAAGTACttagaaataaatt--------------caagaagGGGAGAGATTACTaaactgaaaactaaaaacaccgatgtaagaaaattaaat-----------------------------------------------------------gaaacgtCCATGTGACCCAAAGTGACCTAGAGATTCCGTGCAATGCCCA-AAAAATACCAATGATATTcttca------taaa------aatgtttaaatccaTATGAAATCAAAAAAGACCCCCAATAGC-CAGAGCAATCTAAAG--CAAAAGGAACAAAGCAGGAAGCATTTCACTATTGATCTGGAAAACCTAGTATAAAGCCATAGCAATA------GCACAGTATTAgcataaaaa-aaatacataagccAATGGACTAGAACAGatagcaaagaaataaacctaTACATTTACCGTCA--------TGGGCAAGGATGTCAGAGACATGCAATGGGAAGAATACGGTCTCTTCAGTAAATGGTACGGGGAAAACAGAATGTCCACCCACAGAAGA

a score=30766
s chr3           159554509 1123 + 160039680 TAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTA---GTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCA--GTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATG-AAGCCACTATTACTCTGATACCTAA---------------------ACC----CCAGAAA---GATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGC---TGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCG-ACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatc---------tcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaa-attccaac
s HiC_scaffold_1 100235737 1121 + 233722169 TAACtaatagcagtcctcctgcctcagtctcctgagggct----gggattataggtacagACCTCTACAAAAATTTTAGAGAAGACCTGATGccattattttttacat----tttcctgaaATCAAAAGGGGAGGAGTACTTTGAAAGTCAtgtcctggaagcaagcattactcagATACCAAAGATACCAAGTATTACccagataccaaaaccagaaaaaggaccCAACCATAA--AAGAACTGTGGGCCAGTCTCTTTAATgagcataaatgcaaaaatcctcaataagatact-gcaaacagaatgcaacaagtcatcaaaa-agttatacaccatgaccaaatagtATTTGTTCCACGGATACAAGGATAATTCAGtttgtgcaaatcaataaatata--ccaCAATACGAGCAAA------GACAAAA-CCATGTGatgatctcaatagatgcagaaaaagcatttgacagaattcaacatccattcatgataaaaactctaaagAAAGTTGGAATAAAAGATCTTTTTCTCAATCAGATAAAAGTCATCTCTAACAAGCTATCAACCATCATTATAGTAAATGGAGAAAAGCTGAAACCTTTCATGGTACAATCAGGAATAAGAGAAGGATGGTGCCCACAGTTGCCAGTATTGTTCAGTACAGTTTTGGAAACATAAGCTGGAGTGTttagcatagtgaaaaaaaagaaaaataatacagacagggaggtaaatatttaaattatcattttttactAATGACATGATCCTGTACATAAAATACCCAAAAAATTCTACCCAAAGACTTGTAGAATTAATAACCACAATTggta--------ggatacaaaatcaacactcaaaaatc-atagCGTTCTTGTACACCAATAAcaaa----ccaagagagaaattacagaagcACCATGGTTCACAGTAG---CAAGAAAAATTGAATACTTACatattaacctaaccaaggaagtgagcaaattttacaatgaaaactatagtactcttaaaaaaaaaagagagagagattgaaaagaaatcagaaaatagaaagctaTTCCATGTTCCTGGGTAGGCAAAGCC--CATAGTGAAAGTGGCCACATT-----------TatgtagatttaatgcagtcccactCAAATATGCCAAC

a score=8729
s chr3           159554510 406 + 160039680 AGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAA------TCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATG
s HiC_scaffold_1  73921645 380 + 233722169 aattatttataatatttcagTCTAATAAT--------CCTGATGTCCTCAAAAATGAGTTCTACCAGATATTTAAAGAAGTCTTAGGACTAGTGTTTCTTAGTTGCTTCCAAAAACTTGAAGAGGAGATAattcttccaaattcattttatga---cTATATTGCACTAATAACAAAGCCAAACAGAAACACTACCAA---AGAAAATTATGACTAAATATCCTtgatgaacaaagatgcaaaaaaaacCCCTCCCAATAAAGT--------ACTAAATTCAATAGCACATTCAAAGGATCGCACAACATGCCCATGTGGGATTTATCCCTGTGATGAAAGAATGGCTCAATTTATG----------CATGTGATGTGCCACATTAATAGAATGAAGGACAATAACTAtatg

a score=26960
s chr3           159554517 1946 + 160039680 AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAG--AAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAG----ATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCC--CTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGG-ATACAAATTGGAAA-AGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAAC---tcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaact---tcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatc-aaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa-agtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacc-cagaaatgaacccacacacc-tatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccat--acttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggg--------acctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaa---ctgaacaaagaattctcacctgaggaataccgaatggcagagaaacacc--tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgag
s HiC_scaffold_1  56820437 1808 + 233722169 AAAAATctcacaacaaagaaaatcccaggacaAGATGGCATC---------TTCAAgtgaaatttaaaagagaat-taaCATGAATCCTTctcatattgttttaaaatttaaaaa-ataggaaaatctcCCTACTTC----TATTAGATCAgaattatgctgtta--taaactCTAggcaaagatacaaaaaaaactGTACACT---GACTGATATTTCTCATAAATATTGATGTAAAATTCTACAACAAAATCTTACCAAACTGAACTCAATGGCATACTAAAATACTTTTATACTATGACCAATTAGGATTTATTTCTGGAATGCAAGTCTGGTTCAATACACCAAAAATGATCAAGGTAATATACCACATTAATAGAATGAAGGACAAAAagtacatgatcatctcaactgGTGC--AAAGGGTACTTATCAATCTTCAATATCCATTTACACTAACAACTCTCAACAggctaaataaaaatgaaaaga----agctcAACATAATAAAGGTCATATGCGAAAAGCCCATAGATAACATTATActca-----------------------ctattaaaaaaaaaaaaaactagaagct-----TTTTCTCCAATGACTGTTTTAATACAATTTTAGAAGTTCCAGCCTGGTTAACTag-caagaagacaaaacaaaaagacatctaaattagaaataatggaagaaaaattatCTCTATTAGCAAATGATGCAGTTTTACATGTACAAAACTTCAAAGCTTTCACAAGAAACCTA--AGAACTGGTAAATGAATTCAGC-AGTTCACAGGATATAAAGTAAACATGTTAA--AAATCAGCTGTATTACTGTACACTAACAAAGgataatctgaaaaaaataata-tgacaCAAT-TCATTTAGGgtagcatcaaaaagaataaaatactt--------------------aggtgAAAGACTTATGTGATAAAAAACAGGCAAAATTgttgaa-----aaattaaagagaaagtaaataaatggaaaga-catccatgttcatggattggaagattTAATATTGCTAAAATGCTAGTGTTACT-AAAGTTAGGTACTAGTTTAAAGTAttccttattaaaaattttaa---aatgccaatgagaaactgaaaaatccaTCCCAGAATTCATCTGGAATCTCAAAGCACCTAAGCAGACAAagtaatattgaaaaagaaaaacaaa------gagatttcACATTTACTGCCTTCAAAACTGACTGTAAAACTCCAGAAACCAAAACGGGTTGTTATCgggactcacacacaca-------cagtggaataAGATAGGAACCCATAGAAAAGCATTCATGTACTGTACAGTTAACTTACTTTAgataaaaggg-------------------gaaaggaaactATGTCAGCAAATGTTGCTGGGAAAACTGATCAT--TCACCTACAAAACGACAAATTGACCTGTCACCTTACAACACTGCAACAA--TTaattcaaaatagataaaaaaaatctaaatgcaacagataaaactacattttttataataaaataaggtGAGAAAACTTCATGAGTTTGG------------ATT-----------TGGCAATGATTTATTTCCTACGATGTCAAAatcacacaagagaaaaatttactACATCAAACTTAGCAATCTCTGCACATTAAAGGGTGCTATCA-TCAGACTAAACATGCAAccacaaaatagaagaaaatatttgcaaatt----gtcTAGTAAGGGATGAACATCTAGAATGTA----------AAATCGCTAcaactcaaaacaaaagaaaacccaagTTAAAGATGGG---CAGAGtgcttgaatagacatttct----taaaGAAGACAGACTAGAGGTCAGTTATCAATGAGAAGATCCTAGATGTTGCTAATCATTAAGGGAATACAAATCCTGACCACCATGAG

a score=23309
s chr3           159554526 1261 + 160039680 CCAGCCAAAAAAAGC-CCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAAT---AGAAGTAGAA--------GGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAAT--------TCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAAT-TCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaa
s HiC_scaffold_1   9839705 1155 + 233722169 CCATACAACAAAAGTTCCAAAATCAG----GTTCACCACTGAAATCCATAAGGACTGTAGGGAAGATCTGATGCCAAAATGcctcaaacactttaatgaaaattaaagagcAGGAATATTTCAGGAATATTGCCAGATTCATTCTTGGAGGCTAGCATTGCTTTGattccaaaacaagacaaaaactaaactaaaa-ataaatctacaaacgGTTCTCTTTAACGGACTTACATACAGAGATTCTCAAGAAGATATGGCATGTAGAATGAAACACATCC---------TTTAAAAGATCATACATCTTGGCCAAGTAAGCATCGTCCCAGTGATGTGAAGATAGTTCAACAGATACAAATCAATACATGAAATATGTCACACAAATAGG--TAAGGAccaaaatcacataatcatctcaatgaACCCAGGAAAAG--TTTGACAGAATCCAACATCCATTCCTGACGAGAGTCTTGATGAAATTAGGCATAGCATGACTTTCTCTCAAACA-GATAAAAACTGTTTAAGATAAAATTACTGTCAACATTATCTCAAATGTGGACAAACTAG------CTTTTCTTGTATCAGAAACAAGGCAAGAATGTCTACTGTTATCACATCTGTTTAATACAGTATTCAGAATtgtagccagagcaatcagataaaattaaaaaatcaaaaggacaTATATAGAAAA----GAATCTAAATTATCTTTGTTTGCAAATTACATAATCCTTTacatagaaaagcaaaaagtttCCACCAGAAGTTTTCTAGAGCTAATAATCAGT---------GTAGC-----------------------------------------------------------------AGGAAATTATTAAAGTATCA------TGAATAATAATGCACAA-ATTTAATTATTAGGAATTAActtaacaaaggaagtgaaaaatgT------------CTACAGAGCTTTGAAAATGAAGCACAAACACAGCATTAGAATATGGAAAGATATATCCTGTTCTTGGATAGCCAAGACCAATACTGTCAAAATAGCCACACATCCAAAATGTATGTATAGATTCAataaaattccaatcaaaataccaaaagcattcttcacagaatca-----aactatcctaaaatttaaatggagTAAGAAGAAAcgcagaatagtaaaagcaatcccAGATAACAACAGCAAATCAAGAGGCGTCACAATCCTACAGTTCagattatattacaaaactacaaTGATtaaaa

a score=26794
s chr3           159554575 1030 + 160039680 AGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAA-GGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCC--CATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagatt
s HiC_scaffold_1   2142831  947 + 233722169 agaaatttagagaagatctaacaccaTCACTCttcagactctttaatgaaattgaaagaaaacaatactc--ccCTAGTCATTCC-TAGGACCAAGATTCCCCTGATATCAAATATAGAGAAggatccaatcaaaaaaaaaaa----------------------aaaaaaaaaaaaaaaa-----aaaaaaaaagccacacacCTA--------------TAGGTCAATT-----TCCtgatgaa-------------catagacacaaagatggttcaacatatgaaagtcaataaatgtaatacaccatatcaacacaACCAAGGGCAAAAACAACATGATCATTTCAGTAGACACAGGAAAAGCATTTGACCAAGtctaacacccattcatgataaaaattctgaagataattggaatagatggtctttttttttcaacCTGATGAAGTCTATCTGtggcaaaccaacagctaacatcatactaaattgtCAGAATCAGAAaactttcactctgaaatcaaggacaagataaagatgtccactgtcatgACTTCAATTTGCTAAATTTCTAgcaatactagccagagtaattaaacaagagaaagaaataaaagggatataggtaggaaatgaagaagttaacttataattatttgtggatgacatgtta--ctctacaAGAAGATTCAAAAACTCTAC---------TCTAGATCTATTAATCAATTTCAGTCATATAGCTGAGAACaaaattaacactcaaaaatcaacaacatTCTTGTAGATAAATAACAAGCTCact--gaaaaaaactaaagaaaccaTACATTTCACAACAG-CATA---AAAATGCAATAGTTAGAaattaatctaatgaaggaagtaaaa------tatattgaaaactacagtactctaaaaccagaaatcaaagaggatatgagaaactgaaacgatatcct-tgttcttgggtaggaagaacaaatatagtgaaagtggacatactttcaaaattattaaacaaact

a score=42954
s chr3           159554575 1893 + 160039680 AGACCTTCAAAGAAGATCTAATTCCAGTTCTGCA-----------CAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATC-----------------ATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttct------caaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaa-----------ctgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagagga-gaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcatt--acctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaa---------------------------atcaaata---------------------acccc-----------att------aaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaac-cctgagattcc
s HiC_scaffold_1 159886302 1846 + 233722169 aaaactttaaaggagATCTAGTGcc---tctatatagaagaccttCAAACGctttaatgaaatcaaag-ggAAG-----------CAGTCATTCacagaagcaagcattaccctgattccaaaaccagaaaaggacccaaccaaaaaggaaatctACAGTCCAATTCTTCA-atgaaaatagaagcaaaaatcctcaatactaTATTGGCCAACAGAACATAGCAAGTCATTAAAAAGACCCAGTAGATTTTATAGCAAGTCATCATGACCCAGTAGATTTTATTCCAGGGGTGCCAGAATGGTTCAATATATACAAAT-CAGTAGTGTAATGCTCCATACAACCAGCAGcaggaacaaaaatcacatgatcatctcaacagatgcagaaaaaaccttcaacaaaatccaacatccattcataataaaaagcaTGAAGAAAACAGCTAAAGAAGGCATGtatctcaaactgataaaagccatctatgagaa------agCACACATCCTATTAAATGGAAAGAAGCTAAaatctttccctctaaaattGGGAACAAGATGAGGATGTCTGCTATCACC--ACTCATTCAA-ATAGT-CTCAAAACATTAGTTAGAGCaattaggaaagagaaagaaataaaaggaata-----tggatgggaagaagttaaattattattttttgtagacGACATggtcctctacatagaagaccctaaaaactc-aCTAAAGtgctcctagaattaataaccaaattcagtagtataacaggatacaaagccaacactcaaaagtcaatagcattgctgtacgccaataataaactcaccaaaagaaaaactagagaaataataccttttacaatagcatcaagaaaaatgaaatactcagcaATTAACccaaccaaggaagtgaaagatctctacaatgaagACTTTAGAAACTTGGAAAAGTAGATCAAAGAGGACctaaaaaaat-------------atactgaaaaaaaagaaagagc----tttcaaaaaaa-----------aaaagaaa--------------------------gagctttca---------------gaactagagaaaataatccttaaattcatatggaaccagaagagacctagaatagcaaaagcaattctgggcaacaagggcaaagCAA-------GAGCACCACGATCCTGGACTTCAAACTAAACGACAAAGctgcagtgattaaaaaaaaaaaaacccagcatggtatt--taaaaaaaaataaaaatagacttaTGGAACATAATGAAACAACT-----TCAGGCcactcagct------accttatttttgacaa--------------------agaggaaaaggagcCTTAT-ATCAAAAGGCTCTGGGAAAAGTGGCTACCCACATGATAAGGGTTGAAACTACACCCTTAACtcccaccatgcactaaactaaaattaaaatagatcaaaggtctaaataatagaacagaaacaat----ctgctggaagacaaaaacagataaaattcttgaagacacagacataggcaaagattttctgaacagaGCCCTGGTTacataagaaataataccaaaaatcaacaaatgggatcacatcaag-tTAAAAGCTTCTGAGCAGCAAAGgaaac-------acagtgaagagacaacccacagaataggaaaaaattttgcAAGCGAGTCT---CCAGACAAAGGGTTAATGTCTAGAATAtagtaagaatgaaaaaaaaatggtcccggggatttagctcggaggcataagcacctggtatcaaacatacgcacacacacacaaatggacCTCCCCAAACTTAGATTTAatcaaaaaaatgggcatctgagaagaatagaCGCTGctcagataaagaagtataaatgccaaaaaaatat---gaaaaatgttccacattgctggtcattaaagaaatgcaaattaactcAATGCCTGGTGTTCC

a score=38221
s chr3           159554580 2323 + 160039680 TTCAAAGAAGATCTAATTCCA---GTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATC--CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaat-aatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaagg--ataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactgg------------tatagagacagacaagta-----------------------------------------------------gaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctg---aacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga------cctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtgga-gaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggtaagaaggacac-atgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtac----------------atctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1  71824309 2150 + 233722169 TTTATAGACAATATAATGCTACAGGTTCTA---AAACTctttaacaaaattataaaagatgCAATACTCTCAAATTCACTTCTAGAGACAAATATTATCATGATATCAATACCAGGAAGAGAtctacaaccaaaaaagagatcTACAGGCCAATGCTCCtaatgaacatcaatgcaaaattcctcaataaaatactagc-aaacaaatgcagcaaatcatctgGAAGACTACACACCATGACAATGAAGGATTCATTCCAGAGATACAGGGCTGGTTCAGCATATGCATATTGGTAAATACAAAGAACCATATTAACAGACTCAAGGACAAAATGtaacacgatcatctcaatagatacagaaaaatca-tCACCAAAGACCAAGAttgattcatgataaaaatgctaTGGAACactggaacagatggtctttatctcagtctgataaaagccatctatgacaaaccaacagtcaacaccATACTAAATTTCAAAGC-cagaaagctttcactccaaaactaggcacaaaacaaggacatCCA-TTACAACTGAACTTATTGAAAtggttctggaaactttagcaagaggattgaaacaaaagaaagaaataaaaggaacaaggacAGTAAAGGAAAGggttaaatgatcattatttgtggatgatcTACTTCTCTACATAGAAAATACCCAAAACTATATCACACCATtggtagatttaataaccaaattcagttga-TGACAGTATATAAGGGTAACAATGAAAAATCATTGGTTTTCCAGTGCATAAATAACCAATTAACAGATAGA-AAATTATAGacataacacctttcacaatagcagcCCCTCAAAATGAACTATATAG----Gactcaatctaacaaagtaaaatatttttacattgaaaactt---gTATTTGAAAAATGAGATCAAAGTGGATTTTAGAAAATGG--AGATACCCATTTTTCTTGGGTAGGAAG--TCAGTACAGTGAAAATTGTCAGGCTTCTAAAATTGCTATGCTGTTTtgatgcaattctgatcaaaatatcagtaccatatctcaaagaattatagaaaacaattctaaaatatattcagAACTAAAACAGACC----------AAAAG------CAATGCTGTAAAGGTAAATCGGACTGCATCATGATCCCTGACTAAA------ATTACAcaatggtactggcaaaaagaagaagaaaaaggaggaggaggagaaatacaaacaaacaaacaacaacaacaacaaaaaaaaaccaagcaaataaaaaatgcaaCTGAGGACTGAGGATTAATGAAactgattagaagatgtagaaacaactccagacagaGTTAGTCAACATATCTTCAACAAAAGAGCCAAACACgatcactgaaagaaagacagattCTCTAATGAGTGGTGCTGGCAAAACTAGTTTTCCATATTCTGAAGGTTAAAACTT------------TCACCTTGCACTCAGCTACAATTTAAGTGGGTCAA----------ATACATACAGAAATCTTACATTTGCTGGAAGATAGAAGAGGTAGAACTCTTTAAAACAGAGGTGtatgcaaagactttatgaaaaaaaaaaaaacaatcacacaaaaaacatcacaaagaattaagaattgagatctcatcttaataaaact------gttttacacagcaaaagaaagcaccaacGGGGTGAAGAGACAACTCATGGTGTGTGAAAGAGTT-TTGCTCAGTCTTCTTCACACAGAGGACTAGCATCAAGaatgtaaaatgaatt-----------------------------------ttaaaaag-------cagaact---------------------------------------------cccaaataaat------------------------aaattcagtgcaAAA----------------------------------------------------------------------------ATGTGTACGAGAAATGAGACTTTCACCATTGTTGGTAGGAACacagactagtgcaacca--ctgaaAATCTgcgtagagattcctcaaaaacctaaaactagaaattccatttgatccatcCATGCCACTTCTTGGCACTTTtgctaaaga-------------aataaaagcactaCGCAGATCTATTTTTATAGTAGCATAGTTTGTACtacataaatcttggaaacaacccaaatgaccatCAGTGGGCGAATTTATAAAGAacttgttgagctctttttttttttttttttttgatagtgaagtactactctgc-attaagaaggataaactggagacatttctagtcaaacggatgcaccttgaaaccacacttttaaattagataa

a score=9561
s chr3           159554609 371 + 160039680 CAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATC-CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTT
s HiC_scaffold_1 185532517 331 + 233722169 CACACTATTTC------TGTAAGTAGGAG-----CCTTCCAACTCATTT-acaaagctaa-ataaacctgACA------------AAAGATGGCAACGAAAA--GAAGGCTGCAGGCTAATCTCATTTACAAATATAGATGCAAACATCTTAAATAAAAGATTAGCAAATTGAATCCAGCAATATATTAAATGAATATCCCACAATGACCAGGTAGGGTATATTATTGGAAAGCAAGGACAGTTCTATTTTCGGAGCTCTATTAATATAATTCATCATATTAATAGGCCAAAAGGGAAAAACTG--------------GGAATGATAAAAAGGCATTTGATAATATTCAGCATCCATTTCATAGAAAAATCt

a score=6303
s chr3           159554614 353 + 160039680 TATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAG------------AGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTC
s HiC_scaffold_1 159471353 331 + 233722169 TGTTCCAGATCATTGAAAATAATGGAAAACTTTCCAATTTAT------AACCCACTAT----ATGA-GCATAACCtctattaaaaaatgacaaaaacagcactctaaaaataaaactgcagggcaatctccctaatgaatttAGACACAAAA---CACTGCAAAAT------------GGACCCAGGATgtattaaaagaatgaaattccaTGAACAAAATGGGTTCCTTCCAGG---------ATAGTTTAATATTAGGAGATCTACTAATATAATTCATCACATCAGCAGATCAAAGGAAGAAAACCATATGGCCATCCGGGTACATAATGAAAAGacatttgttaaaaattcatCATCTTTTC

a score=7347
s chr3           159554636 259 + 160039680 AGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAG-ATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAA
s HiC_scaffold_1  33701927 246 + 233722169 AGGAACactttcattcttattttataaagccatcattatcctgataccaaagtC--AGAAAGTAtactgcaaaaaaggaaaatgacaggtTAATATCCTTGGTGCATATGAATGAACAAAT----------ATTAGCA--AATCGAATTCAACAGTGCATTAAAAGGATCATACACCATGATCCAGTAGGATTTGCTTCTGGAATGCAAGGATAACTCAATATATGCCAATAAGTAAATATGAAATGTCACATCAGCAGA

a score=27076
s chr3           159554651 1515 + 160039680 CTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGG-GAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatacctt-ggcgtgactct--------aactaagga-------agtgaaagatctgtatgataaaaacttcaaatctctgaagaaa---gaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaaccta------ggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctt--tactacagagcaattgtga--taaaaac--tgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaactta-tagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatggga
s HiC_scaffold_1  72209365 1471 + 233722169 CCCATTGTTCAAAGCTAGCTTTACCCAGATACAAAAACTGGCCAAGGAtttaacaaaaattgaaaattgcCAACGAGTTTCTTTAATGAATACAGATCAAGACATCTTCAACCAGACACTCAGAGACAGACTAGAACAAATCATTAAGTAGATCATACATTATGACCAAATGAGCTTCACCTCAGTGAAGCAGAGA--attaaacatacataaatcaatacataaatCATACAACATAAAGAGAAGCAAAGATAAAACTGCCATGGTCATCTCTATTGGTGCAG-TACAGCATATTACAAAATCTGGCATTCATTcaagataaaaaccctgaatCAAATATGTATAGAATCATTTTACCTCCAACTGCTAAAAGCA---CATGAAAAATCCACTCTCAATATC-TAGTAACTAGTAAAACGTTAAAAGCATTCATACTgaaatgaggaaaagagaaaaagttcgTCACACTCACTGCCCTCATTCACTGCAACTCTGGCAACGTTATTCAGAGCTGTCCAGTAAGAGAAAGA----------ATATGTGTAGGAAA----GAAGTCA----ATCCTCATCTGCACATGACATAGAAGACTGGAAAAG---------AAAGCCCACCAGAAGACATTTAGAATt-ccaaacaaattcagcaaagtggcACAATACAACacaaac-----aaaatcaataatgttACTGTACACCAACAATCATTCTAATGAGAAAGAATTCAGGAAAACAACCCTATtc---atagctaaaaaaaa---aaaaaaccttaggaattaatctgaaaaagaaactaaaaagcaGTTTAATGAAAGTATAGTGCTATGAAAATTTTAGTACtataaaaaaaaggaatattgaaGTTGAcgttagaaaatggaaggacatccgCTGATTCTGAATAGGCAGAGTcaaaattgttaaaatggccaCACTATCAAAAATGATATATAGGTTCAatgcaactccaatcaaaataccaacagcattctttACAGCACTAGAAAGGAATAATCCTAAAATTTCATAGGAGGCCCAAAGAATCAAAACAATGCACAACAAAATGT----GCAAAGACAA------------------TATTGTTCTGGATTTCATGTTTTATACAACAAAGCAACACTGATTTAAAAACAATGACTCCTACTGACATGAAAACTGCCCTATTCACCAGTAGATTAGAACTGAGGATGCAGAAACCATCCCATGTGTCTTTAGTTATGTGATTTTTGACAAAAG-tctaaaaacaaatgctggaaaaaagacagcctctataagaaatgatgctgaaaaaaatGGTTATCCATATGC---AGAATTAGCTTACCTCTATGCGTCTCCTGCATTACTAATATTAAA--TAAACATCTTAAAAGACAT-AGGTATAAAAAGCAACCATGGAATATACTAGAAGATATTTTGGTAAAAAA-CTTGAACAT-TAGACATAGGCAATAATATTCTAAATAGAGTCGCAAATGCACAAGAACtaata-caaaaattaacaaatgaaa

a score=12593
s chr3           159554661 421 + 160039680 GAAGCCACTATTACTCT-GATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGAT---------CAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAA
s HiC_scaffold_1 134234716 413 + 233722169 GAAGCTATCATTACTCTTGAttccagaaacagaaaagaacccAGTGACAAAAGCAAACttcaggccaatctctttaataaacacaga----aaaatctaCATAGACATTAGCA--Agcagaatacaacaaatcatttaa---aagatatattatgaGCAAGTAGGCTTCATTCCAAGGATAATGTGATGGTTCAGTTTATGCAAATCAGTAAAAGTAATACATGACGTAAGCATAAGTAGGGGCAAAA-TCACATAGTCATCTCAATTAATGCAGAGAAAGATTTTGACAGTAGCAAACACCCATTCAGAATGAACATctgaaagaaatagatttaaaaaggaattt--------tatataaatctgataaaaaccacTTATAACTAATCGATGGCCAATATCATAGTAAAtggaaagaggcagaaaaaaa

a score=41142
s chr3           159554665 1545 + 160039680 CCACTATTACTCTGATACCTAAACCCCAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAG----GCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattcc---aactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccg-----------tgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggt-------------atagagacagacaagtagac------------caatggaatagaa-------ttgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagat----atgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtca
s HiC_scaffold_1 232195281 1547 + 233722169 ctagtattACTGTGAttccaaaaccaaagaagaatTCAACCCAAAAAGCAAATTAaaggccaatatccctaatgaatatagacacAAAAGTCTTCAAAAAGACACTGGCAAGGAGAATACAGCAAACCATTAAGAAGACTAT-------GGCCACGTAGGATTCATCCTGGGGATTCAGGGA-GTTGCAGCATACACAAGTCAGTAAGTGTAATACAGCAAAGTAAGGGCGCCAAGGACAAAACCCAGCTGACCACCTCCGTAGATGCAGAACAGGCATCTGACAAAGTCCAAGCCCcgctcatgataaaaacccaagAGAACACTGGACCTGACGGTCAGTCTCTATCTCAAAGGGATGaaa-ccatctgtgacaaaccaacaggtaACATTATATTAGAT-GATCAAAACTGAAAGATtgtattctaaaatcaggaagaagactgggatgtccactatcaccactcctattcaacacagttctggaaacactagccagagcaattaggaaagagaaatgaacaaaaggaatatggataggaaaggaaaaagttaaattatcattgtttgcagattacatgctactctacatagaagaccccaaaaacgcTATCGAAAGACTTTTAGATTAAATAACCAGTT------ACATAACTGGATAGAAAGtgagcactcaaaaatcaacagcatttctgtacacaaatatcaaattcactgag--agaaattaggaaaataatacttATCATAATAGCATTAAAAAGtgt--aatatttaggaatcaatctaacaaaggaaataaatgatcttcatattaaaaattacagtactctgaaaacgGAAATTAACAAGGATATGacaaaatggagagatatccattgctcttgagtaggaagaaccaacatagtgaaaatgatcatactttcaaaattattatacagatttaatacaattccaatcaaaataccactagcatacttcc--------ctagagaaaacatttctaaaatttatttag------agaagacctagaataacaaaaacaatt-tgaataacaaaggcaa----ggtagaggCATCACAAAGCCTGACTTCCTGATTTGAAAGTATATTACAGAGTTCACATGATAAAAACAGTACGGtacttgcaaaacaaaacaaaacagaaccgaacaaaaaaacaaacctaagGCTCATTGGAACACAAACAGCTCCAGAAGATGcggaaacaactccaaacacattcagccactt-atctttga---------caaacatgttcactagaagaaagacagcctctttaataaatggtgctagaaacaCTGAAttgccacatgctgaagactaaaactggatCT-TGTCTTTTGCCAGgcactaaagtaaaatcaaaatgcatcaaagatctacgtattgaaacagaaacactcaacCTCCTGGAAGGGCGActaggcagaactcttgaagcTACTGATTGGTGTAGACAAAGATTTTATG-GCAAACCCCCAATCACACAGGAGCTATCACCATCAATCAATGCCTGGG-CTTCACCAtagtaaaaagcttttgcacagcaagagaaaccacca

a score=11366
s chr3           159554692 607 + 160039680 AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAAT------------ATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATA---CCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTT--TTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAA-----AAATTCTACCAGAGAACTCCTAAACCTGATAAA
s HiC_scaffold_1 124838658 593 + 233722169 aaaaaaaaaaaaaaaaaaaaaaaaacttcagctCAGTATCCctcatgaacacagatacaaaaaattt--acaaaataatggcaaatcaaattcagtttaatgttaaa---ataatacatcatgaccaaat-tgCATTAGCTCTGAACTGTAATActgtcaaaatgaaaaagacaaaatttgaaaACCAGTCAATATCTCTTATCATATAAGTAggttaaaataataacaatataagaTCATCTCACTAGATGCAGAAATATCACTTGACAAAATTTGACATACATTCATGATGAAAATTCTAAGGAAACTAGGAATTCAAGGTTGAGACTTCCTCAGTCCAATAAAAGACATCTATACAAAACTCAGagttaatataatatttaatggTGAAATCTTG--aactttttttctattattataaaCAAAGTAAACATATCAAC--TCTTATTACTCTAATTTAACATCATATTGAAATT-----------CAATaagatgagaaaaaga-ataaaaggcatAGATActgaaaaggaacaaataaa------actATTCAGAGATTACATGATTGCTCATGTA---GACTCTGAACGGGAAAATACATTAAAga-----taaatctaataaa

a score=35567
s chr3           159554701 2255 + 160039680 CAACAAAGATAGA--GAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCT---CGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcaga-agatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaa----------------tctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaac--ctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaat----gaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaac------------agcaat-------------------------------------ggcttgtgctgt-----aagatcgagaattg--acaaatgggacct----------aat-------gaaactccaaagtttctgcaagg--------------caaaagacac----------------------------------------------cgtcagtaagacaaaaaga-----------------------ccaccaacagatt----------gggaaagg-------------------------------------------------atcattacctatc---------------------------------------------------------ctaaatcagataggggactaatatc--------caacatatataaagaactcaagaaggtggacttcagaaaatcaaataacc----------------------------------ccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactacc----ggaggatccagcaatacgtctcctgggcatatatccagaagatgc---cccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagcca-----gaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcactgataagtggatattag
s HiC_scaffold_1 107509887 2476 + 233722169 caacaaaaacaaacaaaaaacgagACCAATACCTCTAGTGAACATgggtgcaaaaattctcaacaaaatact-aggaAATGAatttaatagtgtatcaaaaaGATCATCCATCATGGTCAAGCTGGTTTCATCCCAGAGGTACAAGGATAACTGAGCACACACAAGTCCAAAAATATAATAGATTACATTAAcagaatgaataataaaaatcactttattatctttatattcAATGCAGGAAAAGCATgcaacaaaattcaacatc---tcctgatAAAAAACCCTGAGCAAATTAGGTGTAATAAAATCATGCCTCAACGTG---AAGGCTTTGTATGACAAACTTA-AGCCAACAT---ATTGAATGACgtaaagttgaaaatatttcttgtacTATCAGAAACAAGAGAAGTGTGTATAGTCTCTCTACTTAtgttcaatatagtactagaag---tagcTGGAGCAAttggataataaaa----ataaaaaaaacataaataggaAAGGAGGAACTGAAATCATCCCTCTTTGCAAATGATGTG--AGTTTGTAAACAGAAACCTATGATCTCCACCAATAA-----TAGAACTGATAAAC----TCAGTAGAAAAGCAGTATAAAAAAT-------------TTAGTAGCTTATTGATAT-------GTCAACAGTTTTCTGAGAGAAACGGGAAAGCAAT-CCATTTACACTAgctacaa--aaagtaaaatattt----atgacta-aataaaggaaatgaataaCCTCCATGatgaaaattacataattttgaTGATGG--attgaagacacacacacacaaaagtaaagaTTTCTCATGTTCCTAGATGGATTGAAAGAATATTGATAAAGTGCCcctgctgcaaaaaaaaaaaaaaaaaagaaaaagtttacaaTCTCAATTTAATCCCTAGcaaaataccaatgacattcttcacaaAGCTAGgaaaaacatccta-aaattcatatggaaacacaaaagtTCC-TCATAGC-CAAAGCAGTCTTgagaaaaaaccaacaaaactagAGACATCACAGTACCTGATTCCAAAACATACTACAGAGCCATAGTAACCCCAACAATATGATTCTGGCGTA---AGAGGCATATAGGCCAATGGAACTGAATAGA--GCACAGAAACagaggaacc-----------------------------aagaaaaaaaaaatcac----tggagaAAGAACAGCCtcttcaacaaatgatgctgggaaaa----tgaTATCCATATA-CAGATTAAAATCTGATCCCTATCTCTTACTCTGTggaaaagtcaactcaaaatgaatcaaagacctataAGAAAGACCTGAA--ACTGAAactc-tagaagaaaatatagggatAACACTTCAAAACAATGGTATAGGTAATGATTTTCTGGATAGAACCCCCAAAACACAGGaaattgatagaattttcagcgtggaagggaaccatctgataggattttggcgtGGCTAAAAAGGGAGATATGAAATAGaagagacctttattttaagaatgtggggagagactctATGACCCTCCCAGGGTCTGGCATTATCTCcaccagacacgtggtgtgggggcatgtGGCTTAGGTTTGgagtggtgcctaaggggcattagtaatgcacaggtagcccattggtattcatttccgcgccacaggtaaattgcctaggggcgggaaaggtgacctcaGGATAGGGcctcttggttctgcctccaaggctttaccagctacagtgtcccatctggggcaaaatcctttcagaaatGAGCAAGAAATTTGGtaatattaaactaaaaaaactacaccaaaaaggaaacaatcaacagagttaacagaaaatgcacacaactggagaaaatatttgtcaattATTCAAATGACAAAAAGTTATCCAGAATATACAGCAATTCAAAATGCAATTATAAAATGGGACAATGAtctgaacagatacttctcaaataaagaaatataaatagccaACAAATACATGACAAAAGGCTCAATATCATTAGCTATCAGAGAAATTCGAATCAAAACTACATAGAGATAACATCTCACCTAAACTAGAATGGctatagttaaaaat---attaaca--aattcatGATGAAGA-----AGATAAAGGAATTCttatacattgttggtgggaatgtaaactagtatagcAACTATGGAGAACAG---------TTCTCAAATATCTAAAAGTAGCTTTATCATATAGATGATCCAAATATCTTACTTCTGGATATTTAGCCCAAGGACATAAAATCAGCATAGCAAAGAGACACCTGCACACTTATGTTTATTATGGTACTATTCACAACAGCTAATACTGTATATGGAGTCAGCCTAAttgcccatcagcagatgaac--aTAAAAAATATGTAGT-TTTATGCACAATGAAGTATT-TTCAGCCAT---AatgaatgaaattctgtcatctgCAGCAAAGTAGATTGAACCAGAGATtaatatgttaagtgaaaaaaagcaGACCCAGAAAGACAAGTACTACGTGAGCTGTTTCAtatgtggaagctag

a score=9430
s chr3           159554707 667 + 160039680 AGATAGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGG-----CCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAG--CCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTT--CTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaaca
s HiC_scaffold_1 173578727 609 + 233722169 agacagaatgtagcaaatcagtAGCCCTTAGGAACATAAATATACAAATCCTCTACAAAAGTTTAGCAACCTAAATCTCATGATAAGTAAGAAAAACAATATGTTTTAATGAAGTGGGGCTCGTCCCAGGGGTGCAACTCTGGTTCGGCATTAGAAAATCAAACAAGGC-ACCCACCCTACTAACAGACTAAAGGAGAAA----------------------CTGCAGAAAGATTCTTTAACAAAATGCAAAATCCTTTTTTGATAAGAATTATCAACAAACTAGGAAGTGAAGGGAGCTTCTTGACTTGGGCATAA-------AATC-----CCAGGCAGTGGGATCACCTTGATAGTAA-------------GGACCTACGTCCTTTCCTATGAGGGCGGGAGCACACTTGTCATCTCTGACCTCTAGCTGTCGTAAGTCAGAAACTGAAATa----------------ggcaaggaaaagaaataaa-ggcatACGGAGtggaaaggaggaaataaagctGCTCTTACTCTTAGGTAATACGATCATTTACACAG--AAACTTCAAAGATCTACACCAAAGCAACTAGGACCGATAAGTAAGTTCAACAGGGTCTCAGGATACAGATTCAGTATAAAAACATCAATTGTGTTTCTCTATACTAGCAGTGAACA

a score=35798
s chr3           159554713 2255 + 160039680 AGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG-CAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAA--------------------GCAATCCCA--------------------------------------------------------------CTAAAA----------------------------TCAGGGAGTAGAC---------AAGGCTGCCCACTTTCTCCCTA---------------------------CCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACA-AATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaa-caggctgagaa----agaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaag-gataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaat-tgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggt-catcgtgtagaagaatgggaatcgatccatact-tatctccttgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaaga----tcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaacagattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttca-gaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctg-aaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatgg-ctaagatcaaaaattcaggtgacaggagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaagatgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaactcacacaatatgtactcactgataagtggatattagccccaaacctag
s HiC_scaffold_1 123227521 2221 + 233722169 aaaactacaggacaatttatttaatgaacatagatgcagaaattcTCAATAAGAGTCTGGCAAACAGAGTGCAACAACTCATAAAAAAGATCAGAC-TTAAGACCAAGAAGTCTTTATCCCAGGAATGTATGAGTGGTTCATCATACACAAACCAATACATATAATGCACTACATAAAAAGaggcaacaacaaaaatcac---atcatctcaatagacgaaaaaaaaagtcttcaatataat-------ctgttcatgataaaattctgaaagaaaagagGTATGGAAAGGCCttatc--aatctgataaaagttattTAGTACAGACCTCCTG-CAACATCATGCTCAATGAAGGGAAACTAGCAAGGCCTGGtgctgcatgtctgtaatcccaactctcAGTAGTCTAATGCCCAAGGTTCACCGTACATTCGAGGCCGTGCTGAGTTGCCTTACTTAAAACCATTCTGAACTATGTAGCAGCTCtctgtcaaaaaataaacaaatagggGAAAACTGAAAGCTTGTCCTCAAAAACCAGAAATAAGTCCAATACTGAACTTCTGTCAGTATAGTACTTGAA--ACTACCTACAGCAATCAAGCA--------AGAGAAAAGTGATCcataataggaaaggaaaaaatc--aacTTCCCCTTCCACATA----------------AAGAATAGCCC----AACTCCACATCATGAATCCTAGAACtgataaa----ttcagcaaggtaaTAGGACACCAAATTATGTGAA--AAATCAATAGTGCTTAGATTCACCAATAGTGAGTCcatctgaagaaaacaaaaaatagaaaaacagtacCATGC-AGctagcttcaagaaaaattaaatacttaggaa-----ctaGCAAAGAAAGTGAAAG-CATATGTAACAAAAACT------------GTAAGAGGATTGAAGAGGAcattgaaaaactgaaagataactt-tgttcctggataggcagaaccaatgttTTCAAAGTGTCCATGCTACCAAAAGCAGTGTA-----TTAATACAGTTGCAATAAAAGTACTACCAACATTCTttacagaacttaaaaaa--aaatgtaaaatttatatggaaccagaagagccccagaatagcaaaaaatcaccctaggcaacaaaagcaaagcaagaggtaTAACAACCTTGGATTTTAAACtatattacaaaactacaaaaaataaaaacaacattgtACTGACATGAACACAGACATATgaaccaatggaacagaatagaggatgcagaa---aaatCAGGCACAGTCAACTATCTGATCTTtgagaaaggggccaaa--catgtattGCAGAAAAAATTGCCTCACTACAAAATGTTTCTGGGAAAACTAGCTATACATAAT-CAGAAGATTG------AATCTATACCATGTCTCT---CACTAGAGTCTA----AAAgggatcaaaaatatttaaatacaa------atactT-AATTTACTGA-GAGATGACTGGTAAAACTCTT---GACATGG--ACAGGTAAAGTCTTTCTGGACAGAATCTCAATTGC-------ATAAGAAATCCCAAAAATCAACCAATGAGA-TTGTCAGTTTTAAAAAGCTGCTGTCCAGTGAAGGAAATACCCAGAAGAATGAAGAGAC--Tctacaga-agggaaaaaatttttgcaagTTACTCCTCAGCCAGACgactaatatctaaaa-atataaagaa--aaaaatgttagaccctaccaaaataaaagaatc------aaaaagggcaattaaaatg----agaaaattttca---gaagtata---aatggccgaagtatacatgaaaaaaatgtgcaccatctctggccattagTGAACTGCAAATTAAGATaacactgagtttccatcttactccagaaagaatggtttatgatcaggaaatcaaa-aataacaaatactggcaaagctgcagagaagaaggaagccttctacattgttggtggcagtataaattagtacaaccactatgcaAACTCATATGGAACAttctcaaaaatgtaaaaataa-------ggtTGAGCCATTAAGtgtccttctaggtatcttctcaaaaca-----------gttaaagtgatatatgc------atacttgtggcagcacaattcataatagctaaatcttggaagtggcccaTGTGTC---CAACAG----ATGGACAATggaa-----------------aatggagtactactttgtta-taaaaaggaaaaatgtgagtcatttgtaagagAATGGATGCACcgtgagaccataatattaagtaaatca-------tacacacaaacttaaatattgtacattttcttatatgagaaaaccaatATATAACTTAG

a score=16092
s chr3           159554727 521 + 160039680 ATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT
s HiC_scaffold_1  45948648 466 + 233722169 atttccttgatgAACATACAAGCAAAAGCCCTCAgtgagatactggcaaacagaatgcaacacaGCATTCAAAAGATCCTACATCATGACTAA--CAGcttcatcccaaggatgcaggaatgtttcaacatacatgaatctataaatgtaatatactacatTAACAGAAGTGA-GAGTAAAATCACACAATCGTCTCCCTAGACATGGAAAAAGGCTTTGACAAAATGCAACATCCATTCGTGATAGAAACCTTGTAGAAAACAGGTA-------------------------AGAAGGATTC--------------------------AGTAAGTGGTAGAAGACtcaaagctttccctctaaagtcaggaacacgACAAGGCTGCCCACTGTCACCTCTCCTGCTCAACAgagtactcaaaacattagccagagctgTTAGGTAAGtggcagaaataaaaaggatttgaaTAACAAAGGGAGAAGTCAAActattcttattttcaaatgat-tgataat

a score=4968
s chr3           159554734 260 + 160039680 TTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGA
s HiC_scaffold_1  10107694 240 + 233722169 TTTTGAACACAGTTATAAAATT--TCAGTACACTGCCAGAAAACTGAatctaaaaacatat-aaaatgattttacaCAATGACAAAATAGAGTACAT-CCATCAATAATGAATTGGTTCAACACCTGCAAATAAAT-ATTGCAAT---TTACATCAATTAA------------AACCAGATGATAATTTCAATTGATATAGAAAAGGCATTTGATAAATTTCAATACCCTTTTATGGTGAAAATCCTTGATGACTCAAAA

a score=20891
s chr3           159554771 1152 + 160039680 CACTAACCAAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAAGGATGGTTTAATATACGA-AAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT-ATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaata--gtcacaaataatataaaataccttggcgtgactctaactaaggaagt-gaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaag-atggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgcca---aaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatag-agacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacac------ctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcat
s HiC_scaffold_1 152902580 1084 + 233722169 CACCCACCAAAGTCAATTATACATTAAAAGGATCATTAATCATAATCAAGTAAGATGTATCCTAGAAATGCAAGAACGATTGAACATAATATAAATCAGTATACGTGATACACC------ACAGAATGAAGAATAAAACCCATGTGATTGTGTTAGTTGATGCAG-AAAAGCATGTGAGAAAACTGAATATCCTTTTGTG--AAAAGCTACCAATAAATTAGGTATAGAACGACAGTATCT-------------------CACAGTGAA-----AGGTAACATCACATTTAAcagcaaaaagttaaaaatactggTCTTAACaatcagaaacagaaaaggatGCCCACtttcaccacttctatttaacatAATACTGGAAGTCTTAGCCGGGACAGttaggtaagaaaa----ataaaagacatccctatctgaaaa---gaagttaaattgctgctgtttgcagatgatgtgatctTAATGTAGAGAGTATCTTGCAGCCATCACCAAAAGCCCATTAGAGCTAAAAAATGAATTGATAAAATTTGCGTCATATAAtagcaatataaaaa----tataacatttatatagACCAGTAGTAAACTATctgaaatagaaaacaagaaaat----tctaTTGCAATATCATCCCAAAGGA-AAAAGATACTTAGGAAAAACTTTGgctaagaaagtaaaaaaatctaCACAATAGA------------TTGA------AAACTAAAATACTGTTAATACGTATGAAATGATATCTGA-GTTTATTGACTGGGAGAATTAATACTATCACAGTGTCCATACTATCATTTAAAG-AATTTACAGATTGAATGAAATTTCTGTCAAAATTCTGATAATATTTTTCACAGAAGTAAAAGAAGAACTCCTAAAGTTTGTGTATAA-GCCAAAATAGCCAAAGCAACATTGAGT------GAAAATAGCAGAGC----AGAGACATCACACTACCTGactttaaaatatactgcaaacCTAT----ATTAAAGCAGCATCATACTGCTCTAATAAAGAGACCCAAAGACcagtaaaatagaatagaaagtccaaaaataaattcatgatcAATGGTTTATGGCTAATCAGTTTTCAACAAAGTGACCAAAAACACATAATAGGGAAAAGATAGCAT

a score=27201
s chr3           159554789 1060 + 160039680 ACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGA-TGCAAGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAA-ACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAA-ATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcatttcttcaacgaattaga----aggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtgga---atcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaa
s HiC_scaffold_1 128515420  989 + 233722169 atacattaaaata----tatattatg-tcaAACTGGTTTTACTGAAGGGAATGCAAGGATAATTCAgcatatggaaatcaataaagaTA---CAGCACATAAATAAGAGCTAAGGAtctaaatcacatgatcatctgaaTAAGTGCAAAAAAAAACCTGGACAAAATTCAGCATTCCTTCCTGA------------ATAAATAAGGTATGGAAGGATCatacctcaaaataataaaggttATAGATGACAAACTCACAACCAATAC---AGTGAGtgtggaaaaatggaaaacattccTTCAAAGATCAGG------ACAAGGCTGACTACTTTCACCACTCTGATTCAGTGTAGCACTAGATATTCCAATCAGAGCaataaggcaagagaaagaaataaaaggtacacATGGAGGAAAGTAGGAAACCAAACATTTCA-TGCTTGCAAATGATATGACTGTACACATATGAAAAGCTAAAACCTTCACCAGAAGACTTTTAGAACTCACACATGGATTCAGCAAAATAGCAGGGTATAAAATCCACATACGGAAATCAATAGCTTTTCTGTACATCAATAATGAGCTCTCTGAGAAGGAAATCAGGAGACCAGTTCCATTCACAAGAGCCA-------------------------------AACTATGAATACGAAAGAGCTCCACAACGAAAATTGTAA--CattgaagaaagaaatggaagaaagcacTAGAAGTTAGAAAGCTCTCTCATGTTAATGGATTGGGAAAATTGAAATTGCTAAAATGCCTGTACTACTCAAAGCAGTCTATAGGTTCAATGCAATGC-------AATGCCA-------TTCTCACAGAACTCGGAAATAAAACAAATCCTGAGGTTCATATGGAAGCACAAATGATACTGAACATTCAAAG---TAATCATGAGTAAAAACAGCAATGCTGGAGATACCACAAtatctaatttcaaaatattctatacaacaatagtaacaaaaacaCCATGATATgttcacaaaaacaaacatgtgGACTCAC-ACTCAGAATAAAAGACCTAGAA

a score=5350
s chr3           159554868 239 + 160039680 ATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACA-TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACA
s HiC_scaffold_1  68361097 231 + 233722169 ATCAATTTAATTCATCATATTAACAGATTTAGGGAGAAAAACTATTTGAGCATTTCAATAGATACAAAAGAAGCACTTGACAAAATGCAATTCCTATT-ATGCTGGAATCATacagcaaattaaaaatagaagagaactATCTCAATGTtgacaaagaatatttttaaaaa------ggcc--tatAATACTCAAAGGTGGTATGTTGGATACTTTCCCCATAAGATCAGGTAAAAGGCA

a score=8683
s chr3           159554893 462 + 160039680 AACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACA-GCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACA-AAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttc
s HiC_scaffold_1 166844092 421 + 233722169 agtttaaagaaaaaagggaCATATTCAGTTTCTTA--------------ATTTAAGAACAGCCA--------TCATAAAAATATCTATAGAAGGATC----------------TACCTcacactgaaagaaaacatttaaatgacaAACGCAAGCCCACGTCATACTAAATGGTAA--AACTAAAGACATTCCACCAAAAATCAGGAACATAATAAATTCATCTACACTTACCACTCCTCTTCAGTGTGGAATTAGAAGCATTAGTTAGAACaatcaagcaagagaaaaaaaataaaagggatatatgtaagtaaaaaggaaa--gaacttaAGCTATATGTAAGTGACATGGTCATTTATACAGAAGACCCAAAACACTCCACCAGAAGACCCTTACAGCTAATAAACACATTCAGCAAAGTGACAGGTCACAAAATCAATCCATAGCA-TCAACAGCACttc

a score=9110
s chr3           159554902 366 + 160039680 ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGGAGCTGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAACAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATC---ACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAA
s HiC_scaffold_1 169467336 310 + 233722169 ACAAAAACCATATGACCATCACAATAGACTCAGAAAAAGCATTTCATAAAATCCAACATCCCTTCATAATAAAACTTTGAGGAAAAT-AGGAATAgaatgtctttatctcaatctgata---------------------------------ataTGAAAAGAAGAGACCCTGAAAGATTTTATTCTGAAGtca-gaataagacaaggatgctcACTACCACCATACTTGTTCAATGTATTTCTCAAgtcattagtcagagcaattaaacaagaggaagaaatacagt-----------------gaaaaaattaaattatcattatttcttacagatgacac-----tctatatag--aactccaaaa

a score=24729
s chr3           159555093 1808 + 160039680 TCAGGGAGTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGTATTAACCAGAGCAATTCGACAA-CAAAAGGAGATAAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAAT--AAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccc---catcaaaattccaactcatttcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacctctggtggaatcaccgtgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagac--------caatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgataagggagctaaaaccatccagtggaagaaagacagcattttcaacaattagtgctggcacaactggtggtcatcgtgtagaagaatgggaatcgatccatacttatctcct----tgtactaaggtcaaatctaggtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatat----gggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcagtaagacaaaaagaccaccaaca-gattgggaaaggatcattacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaa-------aatcaaataacc--ccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacct---gaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaggagatgctg-gcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacgtctcctgggcatatatccagaaga-tgcccca-actgg-taagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacaga-----ggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggt
s HiC_scaffold_1 225456811 1543 + 233722169 TCAGGAAGATCTTAAGAGTGTCTGCTACCACCGCTCCTGTTCAATATGGTCCTAGCAACACCAGTCAGAGCAATCGGGcaagaaaaaagaactaaaaggGATTCATAGAGGAAAGGAGGAACTCAAATTCTCTTCATTCACAAATGACACAATCCCATACATAGAAGACTCTAAACACTCCACCAAAAAACTCCTTAG---AATCAACAAATGCagcaaaatagcaggatacaaaatcaaaacacaaa-aaatcaatagtgtttctgtatat----------------------------------------cttctttttttttttaccagt---------------------------accagggg--------------------------tcaaa-----------------------------------------------ctcatgaccatgcacttgcaaggcaggcgct-----------tatgccgctgagctaaatccccag-cccagtgt--tcCTGTATATCAgtgaacccactga-----gaaagaaattagaaaaacaataccatagcttcaaaagaaaaattacattatcTAG---AGACAGAAGGCCTCAC-----------AATCCCACTTCAAGTTAC--------ATTTCAAGTTATgttacaaaactacagtgataaaagcaGCCTGG-------ACAGGGACA---AAGTAAACACACCAGGCAATGGGACAGAATCAAAGATGAAGAAACAGCCCCAGGCACACTCGGCCACCTGACCTTCCACAA-GGAGCCACAAACAGGC--TGGAGCAAAGAGCGTCCTTT-Ggcaaatggtgttggaaacactggctatccatatgcagaagaatg------aatctaGAATCATCTCTTActctgtactaaaataaaatc-agatggatcaaagacctcgatattaaaacagaaacaat----ctgctggaagataaaataggtaaaattcctAAAGACATCCTATGGCTAtgacaaggactttctgaacagaaccccaactgTGTAAGAAATAACGCCAGgaatgaacaaatggaattttatcaaattcaaaag----------------gaaataaccaacagagttaAGAGACAACCTACAGGATGGGGAAAACATCTTTGCCAACTATTCCTTAGATGGAGgactaatatataaaatatataaagaaataaaaaaattagacctcccaAAAGCTGCAATCAAAAAGCAAGCAATTGAAAA-------TCAG--CTCAAAAAAGAAGT---ACCT------------ATGACCAAtaagcatattaaaaaaaaacattcagcatctttgaccattagagaaatgtaagtcAAAACAACGCTGAGAGT----CTCACACTAG--------------------------------AGAGAACACTGTATGAGGCTGTGAGGAAGAGGGAACCCTTCTGCCTGGTCGgcaggaatgtaaactggtataa-TACTACACAGAtgcat-----gaataaacaaataaataaaaattctatt------tgattTGG-----CTCATTCTGGGT---TTTCTTGAAGAGTGCAAGACGCTGGCTTACAGTAATACATGCATctctatgttcatagcagcacaatgcatagtagctaaatcttggtagCAGCCTCCAGGTTCATAAACATATAAAGAGAATGGATAGAGacaat---gcacacatacacaccaaagcactactcagccataaagaagggtaaatttgtgtcatttgtaagaaaatggatgcaccttgagatcataatgctaaGTAAAAT

a score=6158
s chr3           159555211 189 + 160039680 AAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTAAAGTAGCTGGATATAAAATAAACtcaaacaagtcaatggcctttctctatacaaagaacaaacaggctgagaaagaaattagggaaacaa
s HiC_scaffold_1  11724094 188 + 233722169 aagtcaAACTATTTTTATTAAGAGATAATATAATCATTTACATAAAAGACTCAAAATATTCCACCAAAAAACCCCTAGGACTAATAAGCAATCTCAACAAAGTAACAGGATAC-ACatcaacacacataaatcagCATTGTGACAGTGTATCAATAATGAATCCATtgtgaaaaaaatgaggaaaacaa

a score=14782
s chr3           159583079 1109 + 160039680 AAAAAAATTTCTACTTAA----AATATCTTTAAACAA----TGAAAAAAGTAA------AGTTTCTTAGAAAC---------TTTTTCTCA--AGAATAATAAAATGGAAGTT-GACTCAATGGGAAATAAGTGAGACA--AAAAATAGTTTTTATTTAGAAGTATAAACACAACAGATCAAGATGATTTTAAAGACAAATTTTTTTGGATAATTGACCCACTAAATAATCTCTACGCAGTTATAGTTAACTAAGGCAAAGTAAGATTATATACGATTTACAAAACAAAGAAATGCTAGAATTCTTATTCAATGTGAATTGATCCACACAAGGACAGGTGCCAGGAAAAGGCATTATAGCAGTTCCTTGGAGTGTCTTACAGCTTCAAGGC-CATTTTCT-GCTATTATCAGCAGTTG--GACTGCTCATCA-AGTCTTCATGGTAAGCTATTAAAACCTACTAATCTG-GCTTTTTCCCCATCAGCTTCTTTT--TCTGTATGCAAAATAAATAGATTT-------------------------------------------------------------------------------------------------------------------------------CTATCACTCATGAA--------------------------TGATTTTCTTCTCTCTTCTAAGTAGTGTCACA-----CTGTTTTATAGA--TGATGGCTAAGAAGAA---ACTTACTCTTGAAGAGTTTTCCAAATTAACCTCTTTGGGAAACCTG-TATTAAATCATG-TATTGACTCGTGACTTGAATAGCTTGTCCTGAGAT-AAAGATAGTCTACAAGATAAAAAACATGCTTCGGCATTCCTTATGTAGATATAAGTCCAATTAGTTATAAAA----------------------------------------------------TGCCCACATTAGGAGAGA--ATAATTATCTTTATCAACTGTAATATTATCTTCAT-ATGATATACACGTACCAT-----AAAATGGCTTATCTTTTCTTTCTTTGAGttatatttttata-------tttatataGATTGTGAATTAGCATTGAGAAGGACATGGAAGGT-GTTAAATCATC---------TTCACTTCCAGG-CAGTTCTAGATCCTAGAAGAAAAGGCAAGGACCTTTTTGCCAT---CATTGTACACAATAGCAGCTACTAGGTTTTGTTTTACTTC----GCCATAGCT---------ATATTGCAAAGTGTTGTATACTGCTCAAGTGGACACACAATTAGCTTTTCTGTGAAAATTTAGGAAATTCTAACTTTCACTTCtataaatataaaattataaagtttaaaaaGCTT
s HiC_scaffold_1 146784132 1341 + 233722169 AGGAGAATTCCTAGTTGACTAGAACACTTTTAATCAAAGAATGCACAAAATAATATCTTAGCTACTCAaaaatactcttttatttttctcataaaaataataaaatagaaattcaacTCCACAGTAGTTGATTCAAACAGGAAAGATAGGTTC-ATTTAGAAGTGTGAACACTACAAGTCTCGGTGCTCTTCAAGA-----GCCTCTG-------------CTGCACACAGTCTGGACCGATGTGCTCAATCTAGCTGAATAAAGATTATGTGGGATTTACGGAG-AGGGAATCGCAAGG---CCGACTGCGTGTGAATTTCTGCACCTTTGGATTGATACCAGAAAGAGGCATTGTCGCGGTTTCATGGGATATTTCACAGCTTTAATGCACATTTTTGAGCAGCTATCAGCAGTTGCAAACTAATCAGCAGAGCCCGCCTGGTAAGCCATTAGAATCTActgatctgttttttttccccctcagctGTTTTTCCTCCCTGTGCAAGATAAGCAGATTTGAGAAACAACTAATTCAACAAATTTGATTTGGGCATCTTTAATAGGCTATTTTACCTTTTCATAATTGCATTTGATGCCTTATCAAATGCTTGCCCAAACATTTAACTATTAAATAACGTCGAAGCCCTGTCACTTACACAACCCTTAGCGCATTTCCATGCCGTGCTGCTTTTCTCCTCTCGCCAATGGGCTGACACAGGATGCTGCTGAATGCATCTGAGGGCCTCGAAGAAATGACGTCTGCTTGCAGAGGCCCCCAAGCTCACCTC-CTGGCAAACTTGATTTTAATTTAGGATACTGAGTCATGGCTTCCACAGCTTGGCCTGAGCTAAAAGATATTTTACAG---AACAAACCCTCCTGTCCATTCTCTACAGAGGTCGAAGTCCATttggttataaaaaaaaaaaaaaagaaagaaagaaaaatctgatttgttaaaaatgaaatttcataggACACCTCCTGAGAAATGAGAATTCTGTCTATAAACCACAATAACAACATCCTCACAAAATACAGATTCAATTGTGGAAAAGAATTTAACTTTACTTTC--TGAGCCATATTCCCAGAgtccttttttttattggtagtgAATCTACCTTGAGACAGAAACGGGAGGTCATTCATTCctctgtcattcattcattcataggACCGTCCTAGATATTAAAGACAAATATGAGGGCCCTGTGGCCTTGGGCTTGTTACAAAGGGCCA------AGGCCCTCTTTTGCTTCTCTTGCCAGACCTGGCTTTATCACATTGGCAAGAACTAAGTTATGCTCAGAGGGACACACAATTAGCTTTTC------------------CCTAATT----------TAAATATGAAGTTA-AAAATGTGAAGAACTT

a score=11629
s chr3           159593926 865 + 160039680 aatgtaaaagaagaagtaaaactctcctt----tcttacagacaacattatctgtgtatactctctgatgaaatatataaaaagaaaacaaaaataataaa-aagaatttcaaaaggatacagttacaagatgaatatataaaagtcaaatttctgttaatacactagtaTACAAAAAGCATAAGCTCAAATTAAAAAGCAAGATAATTTAC----GGTGTC--CCAAATAGCCAATAATTATTGTTAATTAGTGAGATTTTTGTTACAGTGACA--TATAACAGAACCACTGCCCTTAG--------GAAAATTTCTAA-----GTCAAGAAGTAAAC------AACAACAAAAGCAAATAATAAACATGTAACAT-GGACAACTCTATTAACTTCTGTCCTCTGTTTAGTAACA--GTCTTCTATTTGTGAGAGAG-------ACCTAACAAGTAATAAAATAATTCCGTAAATTGTGCCAGCATCACCAAGATTCTTAATGATGCCAGAAAAGCTCTTTGTTTGATGCCTGCAGAAGGGGGTTATTTTAAT-----TCATATTTGAGGTTCTTTCATCTAATGAACCAGTTCTGTCACATAG-----------------------------------------------------TTGACAGGGCCTGGGAACTTGCAAGAGTAAGTTCCCTAAATAAGGCCTTTCATGGCTGAGCCACCTCTAATCCAACAAGACGGACTCAGAATCACATTTTGTCCTTTTCAAGAGTGTGACTCAAGAGCTGACTAATTAAAATCCAAGTATAATCAAGATTCTAACTAAGATATTTCAAATCCTTTAGTAAAAAGAAGCCAAATTCTTACACATTC---TATTATAAACACTTTT-TTCCTGCTTAGTTTATGAAAAGCAGTATTTCAGAGTCTACTAACTGCGTTCAACAAACAAGTTTTGAATGTTTGTG
s HiC_scaffold_1 146789642 883 + 233722169 aatggaaaggaagaagtaaaactgcctttattctttgaaaatgaaCATTTCCTTTACATG--------------------AAAGGTGCTAAAACTAACAAATGAGAGTTT------GGAACAGGTATAGGGTA------------TCAGATTTAGTTCTGCCCAGTGGAATACAacaaacataaatacaaat---aaaacaaaacaccacgCCAGTGGTCTCAACCACGTACTCAGTAAA--------------GGAGTCTACATTACAGGAGCAAGTATCACAGGGTCACT-CCCTGAGAAGTGGAGGGACACACCTGAAAACGGTCCACAGGTGCACTCTGGTAGGCAGAGCAGCAGTT--TAAGCGTGGACCTTCAGCCAATCGCATCAGCAGCT--CTTCTGTCGGGAAACCTCGTCTTCCATG---GCCTGAGCCCTCTTACCCACGAAGCAACCTAATAGTTCCATCCCCTGGACCCG-GCTGCCAGGGTTCCTAATGCTGGGAGAATAGCTCTTTGTCTGATGCCTGCAGAAAGAGGTTAAGCTGCTCACGCCCACATTCCACATTCTTGGATCTAATG-GCCAGTTCTCTTGCTCAGAGGGTTTCCAGACTAGAAGATCcagttctcatttttctttgctcCAGGACCCATTGGCTGGGCCTGAGAGCTCACAGCA--AAGCCGCC-------GGCCTCTGGTAGCTGAGCCACCACTAATCCAACAGAGCTGACCCAGAAT---------GTTTTTGCAAGGCTGTAAATTGAG-GCACATTAATTAAAATCAGAGCTTAATCAAGATGCcaagtaaaatatttcagattctttAGAAGAACTAAACCCAATCCTTAAATATTCatggagaaaagaaatttttgttctCACTTGCTCAGGGAACCAAGGTAACTTGCTATCTACTTTCTGC--TCCGTGAACAAGTTTTGAGCTCCTGTG

a score=15912
s chr3           159598739 1668 + 160039680 AGTGTCCTGTCACCATGACAGTTACAA----CATAATGATAATGACTGTACTT-TCTCTAACCAGGTCTAGATCACTTATAATAAATATATCTTTTAGTAATTGAGTAAATGAATTACAGTGA----------------------GGATAACAGCAA--AGAAATGGTGGACAGAT---GTTTACACCAAGAAAGTATGATGACTGAGGTCAGCTCAGGACTGCATGGCAGGCCCACATGGCTCTTTTTTATCCAACTCACTACTCCCTCTCCCTTGAAAGGATCCAAGTCT--GGAAAATAGCCAAAACACTGTTATGTAAACACCAAGTCCAAATAATGTGCAAGCATCTAA-----AGTATTGAAAGCCACTTTTGTTAC-CTTCCATCAGCTGAGGGGTGGAGAGGGTTCCCAGAGCCGCAGGCTCCTCCAATAAGGA----TTAGATTGCATACAAAAAAGCCCTGGCTAAGAACTTGCTTCCTCATCCTACAGCTG------GTACCAGAACTCTCTCTAATCTTCACTGGAAGAAAATGTCTATCCAGTAAGTATCTCTGAGAGAGCTTCTA-----------TCATGACTTTGTGATGGTAAATGGAATATTTCAAGATATTGTAGAAAATAGTATTGGGTTATGGTTTGTTTAAGACAGCTCTTGGGCCTAGCTGGAGATACTTCTTCCTGCAGTGAACAGAACATAAAAAGTTTATATTTAGATGATGGTGA-TATCTGTATGATTTgcaatgggcctggaaggcagttatgaacact-------------atatgaatttcatgtcttgcctattcatttcctacctgtgtggctttggcaaattacatatgtttttaagtctaaactacttaacttttaaaggttttcc--aaatccagaagtgatattataatactgcttaccctactgtattgttgagaaatttaaatgttgtagtacaatatgaaattctctttataaagtgtttaataataagtgcttaataaaat--gtaGTTAGAATTAGAAGGTCTAGCTAGTTAGGACAGCACTTTAAGAAGATATAAAATGGA-------AGCAAAGATA------------------------------------------------------------------------------------------------------------------------------------------AGACATGA---------------GTAGGCACACACAA-ACAAGTATAGAA---------------CCTGAGTCTCTCAATCTTCCTCTTGAAA-GAACTATAGCTCTTGAGGATTGGTAGAGACATGAAGATGATGGGAAGAACTAAGAGTATAATACGGTGAATAACAAAGGGTGGGGCACCTGACTCTGAATGCTGACCTTATTTTATGTTAGTGAACGAATCCATAAGAAGGTCAGGAGTG-----CCCCAGCTGG--------------GTGTCTCTAGGCT--GGTAGTTCTTGAAAAGAATCTTGTGT-----CACAATTCAGAAATAGAAGAGAACACAGCTGAATTAATTGGTATCTTTTCAGAAGCA-TGAAAAACTGCATAAAATAGGATTTGGACAATATGTCCATTTTTATTTAAAGTGTCAAAA------TTCTCTTTGGCATG--AAAGGAAGGGCCTG------------AGCAACACCTCATGAAGTCCTAAGTGGGCTGTGCTGCAGGTGAA------CTGGAAGGAGTCCTTA-----AAACACCT------TTCTCCAAAACAGAGGCATTGCC-TCTGACCCTCTGGAATACTCTTTGAGAATCAACCTGTGCTTCTTTCTCATAATCCCGAATTTCAGAATTGAACACCCTGCTGGTGGCTACAAGAAACTATTTGAAACTGTGGAGGAACTGTCCTCACCACTAACAGCTCATGTCACAGGTTGGTCT
s HiC_scaffold_1 146792694 1835 + 233722169 AGTGTCCTGTTCCCCCTGCAGTCACAAGTCTCAGGAAGACAAGGATGGTCCCCATCCCTGTCCAGGCTTATGTTG--TGTCATAGATGTG------AGTACATAAATAAGTGAATGAGAGTGACCATGTGGCCCCCCACCCACTGGGACAGCGGGAAGTAGAGTCAGAGAACAGTCCCAGGTCCCCCAAAG---------TGACCTGGGTCAGCT-------GCTT-------CCACACACCACCTCTCTCTCTAAGCCACTTCTCAATCTCCACAGGCAGGATCTAGCTCTCTGGGAAATGGCCAGAAAGCTGTTATGGAAACAGAAAGCCCAGCTAATGCTCAAGCATTGGGGTCTGAGTCCTCAAAGCCACTTCTGTTCCTCCGCCTGCAGCCAGGGCGGAGAAAGGGTTCCCAGGGCCAGAAA-TCCTGGGGGAGGGACGGTTTAGAAAGCCTATAAAA--GCCCCTGGGGAGGACCTGCTTCCTCACCCCGCAGCCGCAGCCAGTGCCAGGACCCCTGCTCCTCTGC-CAGGAAGCA--TGTCTCTCCAGTGAGTATCTCCGGGAGGTGTGTCAAGGGACAGTAGTCACAGCTTTG-GACAGGGATTAGCA-GTTGCTGGACA--------GAGAGCGTTGACCGATGGCCTGATTAAGGAGACCCTTGGGTCTGGGTG-AGGGAATTCTCTCTATACTAAGGTCAGCACATAGAATTTGTGTCTGCATGACAGGGACTGCATGTGTGACTCCGAGAGGGACGTGGGGACAGTTCCAAGCACAGGACTGTTAGGCAATCTCGGTTCCACCTCTTGCTTGGTCACTTCCTACCTGTGTGGCACTGGGAAA----------------------ATCACTT---TGTAAAGTATTTTCCGTACATGCGGTAGGGGTG--ATCATAGGACTCACCCCA-TGTGTTGCTATTTAAGTTAGCTGATGTCACGCAA-----AGTTCATTTTATGGTACGTCACACAG-AAGGACTTAATAAGAGCAATTACTATAATCAGGAAGCCTGA----TCAGAGGTGCACCCTCAGAAGTTATAAAGTGAAGGAAATAAGCAAAAACACCAGGcctggggtgcacacctgtaaccacaGCGCTTCGGAGACCAAAGCAGGAGAATCCGGAAACACAAGGCCAGCCAGACTATGTCAGgggttcaaggccaccctgagccacagagcaagaccctggctccaagtaaatacatgaactaaagaagagagagagggaacaaACAAGACAAGGAAAGAAGCAAATTCCGTCGCACCTGAAACTTctgatctattttttaaaaagcactgtaGTT-TTGCGGAGTTAGAGAAACGGGGTGACTGCGGA----------------------TGAGCAACAGAGAGTGATGTGCCCGGCCCTTCATGAAGGCCGTGGTCTCCCTGTCTGGGGGGAC-----AGGGGGTGGGGGGTGAGGCTCCTCATCTGACAGAAAGGCAGTGAGTGTCCGCAGGTCAGGGTGATTCTCACCCAGGACCTCGGGTGGGATCAGAGTTAAGGAAGAGCAGCAGTGGCCACAGGGTCACCTGATTTGTCCCCAGAAATAAGGGGAAGCTGCAGCGAGCAGGATG--------AAGTCTGCTGTGACCCAGA-TGTTAGGAGAGAGCTCACTCCCACCATGCAAAAAGACAGGCCGGCTCCTCTCCCACATCTCTGCCCCCCACGCTCCC------GCTGCTCTctggctgaggccagcctggctgagGCACTTGGGGTCAAGCCCCTGGCGCCTTCTCCCAG---GGAGCACAGCCCTGAGAGCCTGTG-------CACTGAGA--------GGGCTTCTTCC----AACCCCG---TTCAGAGTTGAGCACCCCGCCAGTGGGTACAGGAAACTCTTCGAAACCGTGGAGGAGCTGTCCTCGCCGCTGACAGCGCACGTCACAGGTCAGTCT

a score=16077
s chr3           159601499 651 + 160039680 TATCTCACTTTGCTGCAGGCAGGATTCCCCTCTGGCTCACTGGCAGTCTCCTCCGATGTGGGCCAGGGCTCTTTGAAGTTGGATCTGAGCCTTTCTATCACCTGTTTGATGGACAAGCCCTTTTGCACAAGTTTGACTTCAAGGAGGGCCATGTCACATACCACAGAAGGTAAG------TCCATGACTGACCTCACCAGAGTAGAGCCTATCTCAGTTCTTCTCCTGTTTGAACTTTCACCTTCATGAACCCAGAGAAAACCTCTAAACACATTTCTTTCTTCTTTCTTCATGGTCTAGCCATGTCTGTATATTTGCACAGCCACCTGAGAAT-----GTTAAAATGAGATAATGGGGTTCAAGAGCTCTGAGACAAACATGGCTATCTTCAAATCCTGAATAAACCATGCACCATTTTGTCTTAAATGATGGCATCTGGTAGGGAATTATTGGCCTCTAATTACTTTGT----CAACTGTAGAATGAAAGAAATGGTAGAATCTACTCTATAGAGTCTACCCATGACTAAATGAGAATAAAATA------TGTCACTCATTGTAATAATGCAGTAAAAACAAAAACTGCTAGTACATCTGTGATTACTAGACTATTGGGTTATCTAAATTTCTTTCATTTTTTATCATCAGAAAGGTCTAAAAAAgaagc
s HiC_scaffold_1 146795862 641 + 233722169 TGTGTCACTTCCTCCCAGGCAGGGTCCCACTGTGGCTCACCGGCAGTCTCCTCCGTTGTGGACCGGGTCTCTTTGAAGTGGGAGCTGAGCCTTTTTACCACCTGTTTGATGGGCAAGCCCTTCTGCACAAGTTTGACTTCAAAGAAGGACATGTCACGTACTACAGAAGGTAAGGAGCGCTCGGTCCCACCCCTCCCTAGAGT-GGGCCCGGCTAGGCTCCCCT-CTCTGTGCCTCTTCACCTCCTGAGCCCTGGACAAGACCCCTGAACCCA--------GTCCAGCCTCACAGTTCACCTGGGTGCATG-GTCTGAACAGACATCTGAGAGCCCAGGGAGTAAATGAAGAAACTAAGAACCGGGATTTGGGGTCCGGCATCCCTGACTTCAAGCCCTCTCTCCGCCAGACACCA-GCTGCCTCACCTGGTGACCTCTGGCCAGA---TGCTGTGCTCTACTT-CTGGGTGTTACCACTGCAAAGTG-GAGAAATACCACAGTTGACTTGATA-----TGTTCATTGC-----AAGGATTAAATACCCGAGTTCCAGACACAGGAAGCACTCGTTAGCAGCAAAAGTTGC---TACAGAGGTTGTTGTTAGACTACC-AGCTACCTAGATTCTTTCCTCACTTTATAACCAGAAAGGACtgggaaagagac

a score=26227
s chr3           159604298 620 + 160039680 CTACTTGTATCCTTTATCCATTTCTCAATATTCTTCAGATTCATCCGCACTGATGCTTATGTTCGAGCAATGACTGAGAAGAGGATTGTCATAACAGAATTTGGCACCTGTGCTTTCCCAGACCCCTGCAAGAATATATTTTCCAGGTTAATGAAACCAAACTGC--------------ATTTTATATCACCCCTTTTTGTTCACATAGTTTTAAAGTTACTGAACTGCAAAATTCATTTGCTTCTGCAGGTTTTTTTCTTACTTTAAAGGAGTAGAGGTTACTGACAATGCCCTTGTAAATATCTACCCAGTGGGAGAAGATTACTATGCATGCACAGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTAAGCAGGTAGGATATTGTGCTAAGGGGACATTACTCAAGCACATAAAATTGAGAACTTAGAATTAAAACATTAGGATAAATTTGACAGAACAGAT----GAGTTATAATAAATTTTGACTCCTTGC-TAGTCCCCAACTATGAGATATTTAACATAGGGTGAAATTTGTTTCTTAATCTATGACATTTGAAATACATAGATGGG----AGGAAAACATTAAAACAACTTACatttgttcatttgtaaatattttctg
s HiC_scaffold_1 146797368 640 + 233722169 CCACAGGTGACCATTTCCCATCTCTT--TGTCCCGCAGGTTCATCCGCACTGATGCCTACGTCCGTGCCATGACCGAGAAAAGGATTGTCATAACGGAATTCGGGACCTATGCTTACCCAGATCCCTGCAAGAACATATTTTCCAGGTCCCTGAAACCAAACCACGTGCTCCTAAAGACATTTCAAATAATCTCTTCTCTTCCTGATGGCCCAAAAGGTTTTGAACTGAAAACTGTGTTTGcttctgtaggtttttttcttactttcGAGGAGTGGAGGTGACCGACAATGCCCTTGTGAATATCTACCCAGTGGGGGAAGATTATTATGCCTGCACGGAGACCAACTTCATTACCAGGATTAATCCAGAGACCCTGGAGACCATCAAGCAGGTAGGAGACCGTGTTCAGGTGTCGCTGTGCAGGGAGCCAGAATTTGGACCTTAGAATGGAACCCACCGTGC-AGCTGGATGGGAGGGCTGTGAGAACCAGACTAAGTTTCAAGTCCTTGCTTTGTCAGCAACTGCTAGCTATGCAACAAAGGACAGACTTCAATTCTTCGTGCATGAAATTTTGGACACTTACATGAATTTCAGGAAACCTTGAAAATGGCAAGCATATTTGTATTGATTACTTTATTCtg

a score=5899
s chr3           159605224 225 + 160039680 caaaaaa------cTATTAATGTTGAAAAC-CTGCCGTTGGTGGTTCTAAGCAACTTTGTTGCACCAATTTGTCCCCTTTTAGAGATATTTATTAGAAATAAAGCTATATTTTAAAT-AAATATCAAA------ATATTGGAAA------ATTAAACACTTTGCACTTTTCA-TGAATAATACTTAAAATAGAG----ACAATCTCAACCAATATGTATCATCATATGTTTGCACAGTATTGTGTTTTTA
s HiC_scaffold_1 146798543 250 + 233722169 CAAAAAATGCTAGCTATTGATATTGAAAACTCTGCTTTTCATGATTCTAGATAAATATGTTGCACCAACTTACCCTTCTGGTAAATTTCTTATTAGAAATAAAGCCATATCTTAAATGAAATACCATAGCAACTACACCAGAAAGCTTTTGCTGAGAACTTGGGGAATCTCAGTGAGGTGTTCTTTAAAAATAGGTCCACAATTTCACCCAGTATTTATTGACACCTACTTCCAAAGTGTCATTCTTATA

a score=15079
s chr3           159606343 457 + 160039680 CATCTTTCAT---TCTACAGGTTGATCTTTGCAACTATATTTCTGTCAATGGTGCCACTGCTCATCCACATATTGAAAGTGATGGAACAGTTTACAACATTGGGAATTGCTTTGGAAAAAATTTTACAGTTGCCTACAACATTATTAAGATCCCTCCACTGAAAGCAGGTGAG-GTTGTAATCTTCCCTCCAGTAGGA----GAAAAAGGTGTTC-TATCGTTGACA-AAAGGTTGCTGGAAATATCAGATCTGGATCATAGTATCAATATTGCTCTCGAATT-TAATAAGACTTCCTCTCATTTGTATCCTACCAGGTGACTAATGTCAAAAAGCACGAGAGTAAACAATTAGAAAAATCAAGAAAGCAAGAAGCCAAGTTCTATTCTACAATGTTTCAAAATTTAGTTACATCAAATGTAAATTTGA------------TAAATTTAGTTCTATCAAATATTTATTGAGCCCTTATTC
s HiC_scaffold_1 146800446 457 + 233722169 CATCTACCATCCCTCCACAGGTTGATCTTTGCAACTACGTCTCAGTCAACGGAGCCACCGCTCACCCCCACATAGAAAATGATGGAACTGTTTACAACATTGGCAATTGCTTTGGGAAAAACTTTTCCATTGCCTACAATATCATCAAGATCCCTCCACTGCAAGCAGGTGAGTGTACCAATCTCTCCTCTGCTGAAAACGTGTGGAAAGCATCCAAATAATGGGCATAGAGGATGCCAGATA---AAAAACTGCAT-AGATTATTAA-ATTATTCTCACATTGTAACAA----TTGGCTCATTCTTA-CCTGCCAGAGGAGGAATGCC--------CCAGAGATGACcatttg-aaaatacagaaaggaagtGAACAAGTTCAGTTCTACAGTGTTTCATGATCTGGT----ATACATGTGGATTTGATTATATATGACTTAGATTAAAATCCAGCAAATATTGATTGAGCACTTAATC

a score=52373
s chr3           159614103 2323 + 160039680 GTTGTTCTAAAGCCTTT--AAACCACTTTATTTCAGACAAGGAAGATCCAATAAACAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCAGTGATCGTTTCAAGCCATCTTATGTACACAGGTAATTTAAAGGACAGCT------------------TAAACTT-AAAGATGTCTCTTGCCTATCTTTGATACCAACCCTGATTTGGAAAGTCTTTG-TAGAAAACTAAGTTTAAATCCAATTAA-TTCCATGTAAGCACTGTAAATCTGAGTAACTAAATATACTTTGTGTAGACGCTTACCCACTCATAACTGAGAAATAGCTCTCC--CATTCACAAGCCCATTTGTGTTTTTGAACAGTTTTGGTCTGACTCCCAACTATATCGTTTTTGTGGAGACTCCAGTCAAAATTAACCTTTTCAAGTTTCTTTCTTCGTGGAGTCTTTGGGGAGCCAACTACATGGACTGTTTCGAGTCCAATGAAAGCATGGGGGTATGTCTGATTCATTTGT-TACATTGTGATTCTAAGGAAAGTGTTTTATAAT-------TTTTTTCCTTAAAATTTATCAAAACATTTCCTTACTTTTCCAGGTTTGGCTTCATGTTGCTGATAAAAAAAGAAGAAAATACTTCAATAACAAATACAGGACTTCCCCTTTCAATCTCTTCCATCATATCAATACTTATGAAGACAATGGATTTCTGATTGTGGATCTCTGTTGCTGGAAAGGGTAAAA-----------------------------AATTTCTTCTGGAAACAAAGTGCCTTAATGCAAGTCCTTGTT---GTTAAATGTGAATCACATACAAAAAGGGAAGTGCTATGAAATAGCAAAATGTATAAT---GATAGTGACCAGAGAGTTTAGAAAATCAGAGA--CAGACTAACCATCAGAACTAGAGTTAAC-ACTGAAAACCAACTTGATC--TGAACCAGGCCTAAAAATGGAAACTTCTTGAGGTCTGTAAAGTGCCTTGAATCCTCCCTCTTTCTGAATAATAGAAACAGAAATGCTATTCTCAGTCTAGTCATTAAAAATACATTGACTCCTAAA----GACACAGAGTGGAGACAATGGGA---------CAGAACAAAGAGTATGTAAAGCTGCT----TTTACGCATATCTATGAGGTAATCCTTTTTATTTTCCCTCACTGTGTAGGAGGAGGAAATGACTCTGACATTATTTCTGTCAATAACAGTCTGGGTTGTGACCTAAGGAACAATCACATATATGTTTTTTCAAAGTCTTGAATCACCTCTAAAATTGGTTAGGTGTGGTGATGCATGCCTTAAATCCCAAcagtggtagagcacttgtctagcaagcacaaggctctgggttcggtcctcagctctggggaaaaaaaaaaagacaaaaatcccaatgtttgggaggaagaggcaggaagatctgaagttcaaggtcagcctatgctacattagaccctttttc----aTTATTTGCAATTCTGTTCATGTTTGACTTCTTGTTTTCACAGGTTTGAATTTGTTTATAATTACTTATATTTAGCCAATTTACGTGAGAATTGGGAAGAAGTTAAAAGAAATGCTATGAAGGCTCCTCAGCCTGAAGTCAGGAGATATGTACTTCCTTTGACAATTGACAAGGTAACT------------------TTCTATACATGA-----GTATTTCAACTCACTTTGGAAACTATCC---------TGTTTATAcatataatcctgaaatttcagatctaggaggagt-ttttaaatacca-taattaaac--ctcttattttacaaatgaggaaactgaagctcaaaagaatggtgtgatttag-aaagggtgacttccacagagccaagatga-tatgtagtttcttgatctcaaattctgtgccctttttattcaTAAAATCCCTTTAAAAACATACT---TCATTAATAACTACAGACCCAGTGATTCCCATCCTCCTTTGATAGTTGTACAAATATC--CTAAATGACTTCAAATTCTGGAAAAATAAAGGATCAGAAAGCATC----TCCTCAATCCATTGGCATAAGAAATATGTTTTTCTATAAATCTGAAAATGACATTAGACAACAAAAATAATTAATACTATTAGATAGTTGGTGGAGGAGTTTATAACATTcctctgaagatttggtaactgaaataaatgcagtaggtacactggtaagagaaataacattcaaaattact-------aatatataaataagaaccctaaaaaacatgaacctcaaa-------------gttgaggtttaaat--tctcttttgataaagtaaa-------tatgaaaacgatagaggagg---agtgattgtctaaggaa-actaat-aacctggagagtaga--------------tggtatttgaaaaaaatgTCCTCTAGGCCCCAGGTGT----------GTTTTCCTCTTTGATGTAAGTGTAATATTCCTTTGGAAAT
s HiC_scaffold_1 146801676 2236 + 233722169 gTTTTTCCAATGCCTTTTGAAACCACTTTCTTTCAGACAAGGAAGACCCAATCAGCAAGTCAGAGATCGTTGTCCAGTTCCCCTGCAGCGACCGATTCAAGCCGTCTTATGTCCACAGGTA-CCTGGAGGCCTGCTGCCCATCGTCTCCAAAGCCAGACTTGAAAGACGGGCTTTGCCTGCCTTTCATACCAATCTTGATCATGACATTTTCTGGCAGAAATCTAAATTTAAACATAATTAAATTTCACATAAGCACTGGTGATTCAAGTAACGAAGCATACCTT-TATGGTTGCTTAATTCTTTGTCATTTGCGAACCACCCGCCTCCATTCACAAGCCTGTTTATGTTTCTAAACAGCTTTGGTCTGACTCCCAACTACATTGTTTTCGTGGAGACACCAGTCAAAATTAACCTGTTCAAGTTCCTGTCTTCCTGGAGTCTGTGGGGAACCAACTACATGGACTGCTTTGAGTCCAACGAAACCATGGGGGTGAGTCAGAGGGATCTGTCCAGTTTGTGATTGCA---AAAGGTTTTGGTAATGTACCACTGTCCCCTGTTAATCAgatcaaaatatt---ttactgttcAAGGTCTGGCTTCACATCGctgacaagaaaagaaagaagtaccTCAATAACAAATACAGGACCTCCCCTTTCAATCTCTTCCACCACATCAACACCTACGAAGACCGTGAGTTTCTGATCGTGGACCTCTGCTGCTGGAAAGGGTAAGGATGAGCTGCTTGAGAAGTGGACCAGCCCCAGCTGCTTCCGGAAATGAGGC-TTTTACAGAGAGGCTGCGCTCAGGATGGGGCTGAGCTGCATCTAGAAAAGCAAGAGTCAC---------AGAGATGTAATTGGGACAGC-AGCAGGGAGCACAGGGCACCAGAAATGCAAACTGAGCGTCC-AGCCATGGCGGACAATTGAAAACCAGCTGGGCCCGTGAACCggacttgaaaataaagaattc-tgtGGCCTGAGAAGGGCATAAACTTAACCTT----------------------GATGAGCTCTCCAG---GGTGCCTAGAACACTGCTCACTCCGGAACTGGGGGAAAGAGGAGATATAGTAGTAAATGACCAGCAGATCAGAAAGTAT-CCAAGCTGCCGCAGTTTAAAGGCAGCCGTGAGCCCggcttctttattttttgcc----------------------------------------------CAGCATGAGCTATAAGCTG--------------------------------------TAACTCTAAAA---------------------------------------------ATTACTTGT---------------------------GCTTTAGCCACCGGAATATAAA--------------------------------------Gagaatatgattttaaaagtca-------------tGAATCATCTCCCTAAAATGATGTGTAACTGTGTTCACTCTTGGTTTCCTGTTTTTGCAGATTTGAATTTGTTTATAATTACTTATATTTAGCCAATTTACGTGAGAACTGGGAAGAGGTGAAAAAGAACGCCAGCAAAGCTCCTCAGCCTGAAGTCAGGAGATACGTGCTTCCCCTGAACATCGATAAGGTAGCTAACTTTCTGCTACACAGATTCTAGACGTAATGGGCATGTTTCTTCTTCCCCAGGAATCCTTCTCTTGCTTCGTGTTTTTATATAAAGTTTCAAAGCTTCAAAGTTGGAaggaacattaaaaataaaactagttgAACTTCTCTCATCATACAAATGAGAAAGCTAAAACTCAGAAAAATGATGTAATCTAGCAAAAGCAAACTGTGGCCAGGCCGGGACAAGGACCAGGTTTCGTGATTCTAAATCCACT-CCTCTCTCAGTTGCAGAATCCTTTGAAAAATAGGCTTTCTCCCTGAGGTATGCAGTCTCACTGGTACTTAGGATCTTATGTCAGTAGcataaagactaaataaataatttgaaccTCTAGAGGAACCAATCATCAAAAAGTATCATTGTTGGGAATCCA---GCac-attattttagttttctataaATCTGAAAAT-ATCCCAGAGGGCAGAAAGCATGAATAGCATTTCACAGTTGTAGGA--AAGTCAGAATTTCTTTCTGAA-----GGTGGCTGAAA------CTGCCAGCAGCCTagcaagagaaaagaca--caaaatctcttcatgtgtgcatgtgcataagAGCCCTGTAAAACATGGCACTCCAAGAGAAGCCAGAGGGATAAGACTTGAATAGTCCCTTCGGGTGTGCTGGAGGGATGCTATAGGCACGCTGGAGGAGGAGAAGTGATTTTGGGGGGAAGACGAATGAGCCTGAAGAATGAACTGAAGCCAAGTTCTGGGGTCTGA-------GGTCTCCAG----CTGGTGTTTGAGCTTCGGTCTTCCTCTGCAATAGAACTATAATTTTCCTTGGGAAAT

a score=11527
s chr3           159624637 173 + 160039680 TAATTAACAGGTGTGGTTCTGAGTGTGGTGGTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAATTGCCAGGGCTGAAGTGGAGACTAATATCCCTGTGACCTTCCATGGACTGTTCAAAAGATCCTGAACATATTCCAg
s HiC_scaffold_1 146805257 173 + 233722169 TGACTCACAGGTGTGGTTCTGAGTGTGGTGGTGAGCCCAGGGCCCGGACAAAAGCCAGCCTCGCTGCTGATCCTGAACGCCAAGGATCTGAGTGAAGTGGCCAGGGCTGAAGTGGAGGTGAATATCCCTGTCACCTTTCATGGACTGTTCAAAAAAGCCTGAGAATGTTCCAG

a score=16500
s chr3           159660694 691 + 160039680 aaaaaaaaataaaaataa-tagtaaaatttttaaattaaaataaTGTTGTAAACAACTATATGTAGTTACCAAAATGCCACCACAGGAGGGCTCA-----------CTCTTTCCTTGAGAGCAGCAAATTCTTTAGAACTTATTAAAGATCTCTAACCCTGGTGACTCCCAAGGACAAGCCCATAAATGAGATGATTCATTTTCCAGATTCCATCAGTGAATCACTGTTGAGATCACCCCTATTTAATCTGAGCTTTTCAAATGTATGAGTCACCACACAAGTCTCTGCATTCTAAATTAGAAATGAGAACAGATTTTGGGATGCTTAGTAAAGTAGCTCCTACAGGTTTTTTTTTTTTTTTCTCTGAAACCACGGAGTCTTGTATAGTCTGTAGGAATAGGGAC--------------------AACAC---------------AGCACATGTATCCCCTGACAGCCACCTGCTATTT----TCATGAAAAAAATAATAAAAGCCAATTCCTACAGTTAGAGGTTACTCTAGGCCG------------------TCTGCTGAAGCCACAGGATCTAGTGACACTTCTGGGTATTGGAAAACCTGCCAACAAAGACTCGACTATTTTCTACTTGTATTCAAGAGTTAACACTTGAAATTATCTCCTTTAATGATA------CTCTCATCCAGGAAGATGCCCACCACCAGGGATGAAAAACCCAATCTCCAGCCACACCTCATTTGGTGTTCTCTATACCAATGAC
s HiC_scaffold_1 146822003 696 + 233722169 AAAGGAGAATCAAAACAACTGGAGAAAATGACTTATGGAAAAACTGCTGTGGGTGACTCCATGTAATTACTGAAATCCCGCCACCGGAGGGCCCAGCATCCTCGTCCTCATTCCTTGAGCGCAGGGAATCCTTCCGAGC--------GACCTCCCACCCTGGAGACTCCCAAGGACAGGAACATG---GGGATGAATCACTTTCCAGTTTGCATCGGTGAATCACCGTTGAGATCACCCCTACTTAATTGGAGCTTTTCAAATGTATGAGTCACCACACCAGTCTCTGCATTCTAAATGAG-AGTGAGCACAGATTCCCTGACGTTCTGTCAAATAGCTCTTAAGGGGTCTTTCT--------TCCAGAAGCGGGGCAATTTGCCTGGATGGGATGAATGGGCACAGAGCCTCTGATGGATTCCAAACACTTAGCTCTGGACCCAAACACA---GTCCCGCAGCCACCACCTCCTACCTGGCCCCACG---------------GTCACTTCTTGAAGCTACAGGGTAAGGAGGGCAGAGCCAAGTGCATCATGGTCCTGCTACAACTGCAGCATCT-GAGATGCTTTTGA--CATGGAGAGCTTGCCAACAAACCTTCAAGTACCCTTCtgttttattaaggatt------ttggTGTTGTATCCTCTAATCAAAGTCACGCTGTCACCCTGGGAGA-GCTCA-------------------CAATCCCCAGCCTCCCC---TTTGGCAACCTTGGAACCAGCAAC

a score=33015
s chr3           159663314 1101 + 160039680 AAAGAGGAGTTAGG-----ATCAGAGACCTGATCTGCTCCCCTGAGGGC-----TCCTTACCCTACATAATCTTGAAAATAGCCCCTTTCCTCAAAATCATTTTTCTCCAGCAGAAGGCA------GTTCCTAAACTGTGG--GCTCTGTAACACACTAAAGGCTTTCAAAATCTCTCTAATAA---TTATAATTAAAACATTCAAATGGGTTTTTAATTTTCTTTCTGA-CTAGGCTGTTTCCTAGTCCTTTTCAGAAGCTCTTATTGTTCAGTCTTGACAGGATCCTCTGATAGAAATTACAGCTTTATGCCGCTCAGCATCTTCATTAAAATGCAATGCTGCCAGATATAT-TGCATGCA---------------TATAGAATAATTAAATCATGAATAACACATTTCCAAGCATGATGGCTCCTGAATAGGGAAA-AAGTGTTA-TTATGAACACAGAGATTTTATATTATACT-AAAAATAATTGACAATAACTACTATTATTTGAAGATTCACT-ACTTAAATTATAATTG-CCTGTCGGCAACCCCATTTTTAAG-ACAATGGTAATTTACAATGGAAAATGGATGTGAATTTTTATGCCATTTTGTTGTTATTGTTGTTTTTCTTCAAAA-------CAACACCTTTTAGTAATAGGGATTGCATAATTTGAGAATCTTCTTTTAGTTTTGTTATACACGAAAGGCTACTAGCATTAGAGCAATTTAAACATGTCTGGCTTCAAACTAATAATCACATATCATAGGAACCAAATATATGTTATTTTAGACATTATAATACATATTACATGTGTATAAATATAT---------------TTCTATTTTCCCAAATCTG-------------GTGCACAACTATTA--TTTCCTTGTCACTTTTTATGTGGCTTGGTGTCCTTAGTTTCCCAAATAGCTCCATAACAGCTCTGGAGCAATGAAGG-AAAAGGCAGCCTTTTTGTTGTTTATACCAATCCCTTTCAAATCACACCTGAGtttatgttaatgagattaattttgggaagtcacaagagaatcaaaggttgggggttaatttccaggacagacgactgtgtgcttacagagttgagatcacagtcacatttccacatccagaggaagtga------------------------accaatggcccgtgctttcatcaatcatgc
s HiC_scaffold_1 146856750 1149 + 233722169 AAAGAGGAGCAGGAGACCAAGCAGAGATGACACACACTCCCCTAGGAGGAGCTGTCGCTCATCCGTGAAGTCTTGAAAACATCCC------------TCTCTCCTctacag-agaaaacaaaagttgCTCCTATGCTATAGAAGCTCTGCA-TGTACAAAAGGATTTCAAAAT-TCCCTAATGaagattataattaaaatatttaaatgggtttttaattttctttctgggcTGAGCTATTTCCTGGTCCTCTTCAGGAGCTCCTATTGTGCAGTCTTGACAGAATTCTCTGTTAGAAATGATAGCCTGCTGCCTTTCAGCGTCTT-ATTAAAATGCAAGGTTGCCAGATATATCCACATGCATATGAATGAAGCGTCTATAGAATAATTAAGTCATGAATAACACATCGCTCAGCATGACTTTTCCTGAATAGGGAAAGAAATGTTATTTATGAATCCAGAGATTGCATATTATATTCAAAAATAATTGGCAGTAACAAGTATTATTTGAGGACtcattaatttaaattataatcGCCCTGTTATAAATGCCATTTTTAAGCAAAATCGTGAT-----GTGGAAAATGGATGTGGGCTAACATGTCA------------------TTTTTCTCAAAAGTCCACCCAAAAGCTTTTGGCAGTGATGTTTACATGGTTCGAAactcttcttttacatttattatacACAAAGGGTCATTAGCATCACAGCAA-------GGATCTGGGTTCAAACTACCAGACATATTGCATCGAAA-AGCATCGATTCTATTTGTGGTATCATAATCCATAACACACGGATCTTGGTTTTTGTTCTGGTATCCAGCTCCCAGCTTCTCTAACTTGTCATTTTCTGCATGGCCACAGCAGTGAGCTTCTTTTGTTACAGTT--TTTGGCCTTTTGTCCTCCG-TTCCCATTAAGCTCCAGAGCAGCTCCAGAGTGATAAAGGTAGAAGACAGTCTTTCTGTTATTCAGAATAAAACCCTATAAGCTACACCTGAGTTTATATTAATGAGGTGTTTTTAGGAACATCCCTAATAACCACAGGATAAGGGGCTGGTTGCCAGGGGAACCAAGCATTCAGTT--GGAGTCGGAAC-----TTACAGGGCTACCTACAG-GGAAGGGAGCCAGGCTGATGATCAAGTCAATCACCAATGGCCAATGATTTCATCAGTCCTAC

a score=5597
s chr3           159666304 247 + 160039680 TATAGATTTAACATACTCAATCCAAAATTCTTAAACTTAAAATGCTCTAAATTCTGTAACTTTTTGAGCATCAGCATGATGACACAAGTAGAAGTC-CTACACCATG---AAACTTCATTCCATGCACAAAATTAC-------TTTAAAATATTCTATAAAATTATCCTCAG----CTTGTACA-------TATGAAA-------GAATTTTGCATTTAGACTTGAATCCTATTCCCAGGGTACT---ATGTATACACACA--TATTCCCAAATCGAAAGA
s HiC_scaffold_1   2912080 277 + 233722169 TAGAGGTTGAATATCTGCAATCCAAACACCGGAAGTCTAAAATGCTCTAAAATCTGGTATTTTCTGAGCACAGACAGGACAACATAAGAAGAAAACTCCACACC-TGTCCTAATGTGATGGCTTGCAATAAAAGGCAGGCATtctaaaaatactgtataaaacTACCTTCAGGATATTTGTATAAAGACAGcatgaaatagaaatgaattgCATGTGTAGACATGAG---TATCCACAGGATATTTCGATGCATGGACACAACTATTTCCAAACCCAAAAA

a score=10255
s chr3           159666305 289 + 160039680 ATAGATTTAACATACTCAATCCAAAATTCTTAAACTTAAAATGCTCTAAATTCTGTAACTTTTTGAGCATCAGCATGATGACACAAGTAGA-AGTCCTACACC---------ATG--AAACTTCATTCCATGCACAAAATTACTTT-AAAATATTCTATAAAATTATCCTCAGCTTGTACATATGAAA----------------GAATTTTGCATTTAGACTTGAATCCTATTCCCAGGG-----TACTATGTATACACACATATTCCCAAATCGAAAGAAATATCAGAAGTCTAAAACCTTTCTTATTCCAAGCACTACAGA
s HiC_scaffold_1 221380524 321 + 233722169 ATAAGCTAAGCATCCTTAATCAAAGAATCCCAAGCCCAAAATACTTCAAAATCGGCAATGTTTTGAGCACTAACATGATGCCAGAAGTAGAGAATTCCACACCTGACCTCATATGGCAGATTACAGTCAAAATACAGG--TGctctaaaaatattgtttaaaattacCTTCACATTGTATGTATAAAATAGCTATGAGTCAAGGgaattttatgtttagatttgGATCCCATCCCCAAGAGAAGTTATTATGtacatgcaaatattccaaaattaaaaaaaaaattaaaaattggaaacTCTCTTGATTCCGAGTATTGCAGA

a score=17749
s chr3           159677230 676 + 160039680 TGCTCAAATTTGGAAGAACATCAAGGACTATTTTCC-ATGATGTTTTGATTTTTGAGGCTTAATCAGTGTTGTTTCGGGAGAATTCATTGTTTTAATTAATGATCAAAACAAAATCTCTTAATTAAAGAATACCATGACAAACATGAATATATAATGAGTAGAATTTCCTTTATCCTAGCTGAGGAGTGT-ACTTTAACTTGGCTCTTACCTCTCAGTACAAGTA-AGAACCTCAGGAACTAAAAGGCG-TAAACTTGTGTATCTTGTTTTGCAGCATCAAAGTG-TTGATC---TATTTTATTTAAAAG----------------------AATAGAGGAAAAATAACCAACTTTCTTTGGTACACATCTAGGTCATTCTCTTAACTGCTTATAAATCAATAAGTTCTATTTTAAATCATGACTGTTCAACCTCAGCACATTTGAG--CAGCTCTT------------------tgttctgtgcaatatgagcttcttagcaattctc-ctttcctctacccattagatgccagcagcactttcc-ttccagaaaatcaaaattgtttccagacacttgtaagtgatctc-agagacaaaattgctccagttcagggtcactgGTCTAAAGGAA-GATTTGCTATGTAGAAGAGACAAGAT--AGCATATAAAACA--ATAATAAGTTTGTTTACTGGGGTCTT-GCAAAATACTATTtgtgatagttaatgtt
s HiC_scaffold_1 146868309 717 + 233722169 TGCTCAGAGGAGGTGGAGAGATGAGATCTGCCTTCCTATGCTGTTTTGATTTT-GAGGTTTAATTAGTGT-GCTTCTGGGGAATTCATTGCTTTAGTTAATGATGTGCCCAGCATCTCTTCAGTGGAGAACGC-ATGGCAGACATGAACATGTAACCAGTGTCACTTTCTTCATCCCTGCTG-GGGGTGTGACTCTTCCTTAGCCCTCAGCCCTCAGCACAGGCACAGGAGCCCAGGTAGAAAGAAGAGCTGCACTGGACCAACCAGGTTCTCACAAGCA---TGCCTGATCTTGTATTTTCCTTAAAAGTCAGGGCCATGAACAAGGAAACCAGAGAAGAAAAGCAATCAGCTTGCTTTGGTCCCCTTTTAGACC-TCCTTCTGATTGCTTCCAAATTGATAAGCTCAGTTCTAAATCAGGA-TCCCCAGGCTTGGCACACTTGGGGCCAGATCATTTTCTGTCACAGGAGAGCTGTTCTGCGCAGTAGAGGATGCTTGGCAGTTCTCTCTGGCATCCACCCACTAGATGCCAGCATCGCTTCCCTTTCCTGAAAAGCAAAAATGTTTGCAGACGTTGACAAATGTTCCCTGGAGGCAAAATTGCCCCAGGTGTGAGCTAC--ACCTAAATGAATGAATTCCTTCGCAGGAAGTTCAGGACGAGGCATCTTAATCAATATAACAAGCACATTTCCTGAGAACTTGGCAAAATACT-------GTGGTTAGTGTT

a score=6064
s chr3           159705098  990 + 160039680 AAGAATTTAAACAGAGACATTTACTAAATGGACAAATATACTAGTTTTGGGTTTTTTTTTTCTGTGAAG-----CTGACTACTTTTAAAGACTAG----GATAGTTTCAGCTAAAGCTTTGAAAACTGAAGATTCAATCATATATTCCATCGGAT-GGCCTCTGCTGAGGTTCTAATTACAGATGCCATCATGGCAAGAGCACTGATAAGAGA--GAAATGATGTCAT----GGTGAAGCCAGGAATATGGGAGATG---CAACTTTCTCTTTTGGTAAAATGTATGGAGAAAACTAATTTCGAGTCCCATAAGAACCACTTTTAGAcccttataagggcagactttgagtcacttaaggacctccttataggtcctaacttttaaaggccctacatttcttaacatccccaaactagggaacaagctcct---------------tgtacataaagctACAGCCAA----------ACCTCATGAGTGGCAT----TGCTTCATAGCTATGTAGTAACTTCCAGGTAGACAATACAGCCAGACACCTAACAAAAAC--------AACAGATGA-----TAATAACAAGACCTTCACTATCTAGTTTT----CCCTCATCAGATAGGTGGTGTTAGTAGTGGTTGTGGTTGTGCAGTG-----TTGAGTAAAGGCTTCATGGAT----------GCT------------AACATGAGCTCTACCAAAGAG---CCATACTGAGTCTAATCATCTGATGA---TCACTTTTGGCATATGCACGTCAAAATCAATGCACAGGTCATGAAATCATCTGCTCCCCCAACTTCCTCAAGGGATAACAAAATGAAAGAAGAAAACATTACATACCACTGTTTGTCATACACAGTTTGTACTTGAATATGT------TCAGATCTCTCAAAAGGCAAATACCAATACAGAAGGGGC-----AGAAGATGGGTAAACCTTTTAGACTGATGCTAAAACCATAGCTATgaaagaaaaggaagtggagat-----tagttgag-------------ttaaacctcaggcagtagtatag---------------atatgaccaggcaaacaggctacctggtagcagagtttgcccatgaag
s HiC_scaffold_1 146877053 1049 + 233722169 AGGAGTGAGAGTGGAGGCTTTCACCAAATGGATCACGA----aggtgttcattttctgttgctgtaacaaaacactggatatttatgaagaaaagcttctctagcTTCCCAT-----TTTGAAGATTGGAAGCTGAATGTGGGGGGCCATCAACTTGGCCTCTGGTGAGGTCCTAACAGCAGATAGAATCATGGCAGAAGCACTTGTAAGAGGATGAGATTATATCatcagacaggaagccagagctaAAGAGTAGGGCCCAGGTTGCTCGTTTGGTAGACATCTTG-------CTACTTCCCATTCCCGTGAGAACC----------------AGAGGCAAACCCTTTATGACTCCAGAACATCACACTAAG-CTCAACATTGTAAACCCTCACTGCTTCTAATGGTGCCACCCTGAAGAGTGAACTTCCCAGTAAGGGAACCAATGAAGGAGAAGCCCCACTCAACTTACAGTGGACCTCA-----GGCATCCCGTGCATATGAGGTGAGTGATCACTGTCAGAGGGGAGCTAGAATTATGTGCTTAACAGAAACCTTCAGTGCCCAGGTGGCTGCTCAGGGACAAGTCCATCACTGTCCAGACCTTAGACCTCCTTCTG-----------CAACAGTGTTTGT--TTGTTGATTGGCCCATTgatttttggtaccatggattgaacccagagcctaaACCACACAAAACgcatgttctaccactgagatacTTTTCTGA-CCCAATGGATTAATGACATTCAATGTAGGCATAT-----------TCAATCCATTAGCCAAAGGGGACTGAGCTCCCCCAGCTCCCTC---------CCAAGAGAGAAAGGACGACATCCCCCACCACCTTCTCCCATAGGAAGCTCCCTAGGGGGTGTGCAACAGGTGAGAGC-CCCAGGAGGCAGATCCCAAAACAGATGTAGCCTTGGAGAAGATT------CCCTGGAGGACGTGGCTA----TGTGGCTATGCATAATAAAGGAGCGGGAACAGCAACAGGTGAGAAAGATTCAGACTTTGATCCTTGGAAGAAAGGATGGCGTGGGAGGCCGAGCCCCAGACAAGGCAAACAGGGCACCTAAGAGCAAAGGTTTCCCGAGAAG

a score=19599
s chr3           159731984 860 + 160039680 CATATGTTCAGAGTTATAGTCTCAGAAAGGGAGAACCCTATGTATGACCATCATTGGTCGAGGTTGCATCTTATAAGACCCAGTTTACAAAGTTCCCTCTATTCATTGTTTCTTTCTTCCAAACCAAATCTAACTAACAAGACTCCCAAGCCAGTGCCCTTTTTAGCTGGCAACAGAATCATTAGGTGGTTAATTACATCATAGGCttgaaagtaataaaacaaatgttttgttaattcagaaagggcttctcttcaattagtgcaaattattgaggtttt-TAATATACATACATATGTGTTTTTGTTT-GCAAGGTTCTGCTGATG---AATGACTGTACATCCCACCCACAGACCAGATGGAAATGGTTGGAGTTCATTAAATAAAACACCATTAGGTCATTT-CAGCATGAAATCACAATAG--CTGTGGTTAGACGTGTTCTATAAACAGA-TGATGAAGAGGATGACTCAT-GAATGCCAGGATTATGGAGGCCTTAAGTATTCTTAACATGGAACTTCTAAGAAAATAGTTTGAGGAG-TGCTGAACATACACAATGGAGACCAAGAGACAAAGATGTGACCAGCCCTTAACCATAACTTGTTGAGAGTTAACTATGGCTTGAATC----ATAAAAAGAAATATATActttttctttctcttccttcattcctttcatgttgtatatcttctctttttttttccttcctttGAAAAAATATTTACTGATAATCAAAGATGTTCCGCTC----------ATTGGCCATTTTAAAAGGCA-CAGTCTAATCACCACCAAG-CCATCCTGATTCTGTGGCCTTGGCCAAACCAATCAAACCCCTAAAGCTTATTTTCTACATTTGAAACTAAACATAAgactg
s HiC_scaffold_1 146891598 812 + 233722169 CGCAAGCCCAAAGCTGGGGTCT---AAGGGTCGGACCCTGCG------CACCGGGGGCCAGGGGCGCCTGTTAAAAGAACTCGGTCTCTGATCTTCCTCTCTTTA----------CATCCTTAACGAATGTGGCTCTGAGGACTGGGATACCACTCCTCC------------ACATGCTCATTTAGTGGTTAATGACATCATAGGCgtaaaagtcataaaataaacttttcattcattctgataggctttctccCCAATTAGTGCAGAGTATTGGAGTTTTATTATCCTCATCCGCATGTGTTTGTGTTTTGCAGAGCTCCACTGATGGCTAATAACTGTGGAGCC-ACCCCCGGGCCAGATGGAAATGAGCGGAGATCGTTAAACAAAGAGCAGCGAGGTCATTTCCAGCACGCAGTGAGCATCGGCCTGCGGTTAGCTTTGTTATGTGACTGGACTGGAGGGCAGTGTGACTCACAGAGTCCCAGGATTAGGGAGGCCTT-GGTGCTCACATCACTGGACTTCTGAGAAATGAGCTTGGGGGTCTGCTGAGC---------GCGGGGCAAGGGACCA-----TGACCAGCACCCAGGGATTGCTCAATGACAGTGAGCCACAGCACAAAGCTGTGACGAAAggctctctctcttcttcctctctcctccttccatccttt----------------------------cttcctttctaaaaaCATTCATTGAACATCAAACATGTGCCATTCCATTCCACAGACTGGGCATTTAGGAAAGTGCCCTTCTGATCACCCCCAAGACCATTGACATCCTGGGGTCCTGCCCAAGTCCAGCAACTTCTAGAAGCTCAGTTTCTGCACTTAAAACTGGAGATAAAGATG

a score=30371
s chr3           159745314 1466 + 160039680 aggaattactgtcatttcctacctgttgcctagtgtcttaaaaaacttatttcat-----ttggccagttgcttgtttttcagccactatagtaaatc-tggctcttgttataccatcatgagctcaaagc------TctaagtgcatttatacagtgtcacatttgattctcattggaatcccacaaaatagttttcattattttcttctgggtaaaacatcccagagtcttgggtagtttaaataattgttattaggttgtcttgccaacaaaatcatttgacataaatgaaagagtaaagatttgaGTGAGAGGTTCACATTTCT--TGAAGGTAAAATTGGATGCATAATTTTTCTGTGGTTTGTGAATTTATTTACATAATAAGTGTCACA--GGATAAAAAGATCAAAATGCATT-ATATTCCTATGTAATCATTTCTCTAAACTGGCAACAGTT-------------GCAATACATGAAATGAGGTCAGTCTTAGAAAATCTGGCCTACACATTCAAGTATTTGGTGAG-AAGAATGAAGAGATATTGCAATCAAGCAGACTG-ACAAAAAGGGTAAAAATGAATAAAAGTTTAAATAGGGACTTCACTGCACCTCTGACATATTTAAAAATTGTCCTTCAATACAGCAATCTTGAAGCAAATA-------------------AACTTAAGAGAAACAAGCctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTCTAACCTCC-TGTTCTTTTTTCTTTTTGAATGAAAAGGAGGTAAATAACCTGCAGTGATTGGGAGGAGCCACAAAAGAAGTCCTAGGGTACACATGCCTCAGTTTAGCAAAAGTTCTT-----------------CAGTAGACTGAGTAGGGACAAT-GAAATTCCTACTTCAAAGATTTCTCTTTCTTTTAAAGTATCTGTTATCTTGTCTGGAACATCAGACACACTA--------GAGTCTCCTTCCATTCTTTCTAGTCAGAATGGATCAGACCAAACACTTGCTGTTTCACAAAGGAAAAGCAACTGACACACTTCCATGCAAGGTTGGGTAACTATCAGGTTTAATTTTCCTTTATCTTGGAAATTTTTCATAGAAA----------------------------------AAGCTCCTTTTAAAACATCAGCTATATAACATTAGCTCCATAAGT-AAATGCTTATTAATATACAATAGTTATTCTTATCATAAGAGTATCTCATTCCCACATGCAGA--AAAACTTGCCTGTCTGCT--AGTAGTATTATTA-GGGACAAGAGTG-TTTTCCTGTCCATTCATGTTTCAACTATTATTTAGCTGAATTCTGTTTGTACAAAGGTCCTTGATTCCTACATAATA---------------AGATGCTATATTCAGAGACATTCTGCT-CCTGCCACAAAACTCAAGCCAGCACTCCTTCTCTGGATGCATATAATGTTTCTGAGCATCATAAAACATTTCTTTAAAAAGAA
s HiC_scaffold_1 146901700 1441 + 233722169 AGCAGGTACTGCCATTTT-TGCCTGGTGGCTAATGCCTCAGgataattatttcatatattttagccAGGTTTTT-TGTTTCAGCCGACAGAGTAAATTACAGCCTCTGCTCTGGCATCTTGAACTAACAGTGAAGTTCCTAAGCTATTTTATACCTCACGTCACCTGATGCTCATTGGAACTGAAAGAGGTGA--------gtctttttttaagtgaaaatccCCACAGCCTCACAGGGTTTAAATAATTGGTCAAAGCTTACGTAGCCAGCAAAGCCAATTGAAAAACAGGACAGGATAA-GATTTGGATGTTAGGCACACATGTTTGCTTAGAGTAAAATTAGG-Gcat---ttttttatgatttgtgaattttattatataataaatgtCCCAAAGGTAAGAAAGATCAACACACATTTAAGTTTATCTGTAATATTTTACCCAAACTGGCAATAGGTTTCCCTAAAAACAGCAGCACTTGACACATGATGAGTATCAGA----------------TTCCAACATCTGATGGGGAAGAATGATGAAATAGTGTAGCCAGTAGAACTGGACAAACGAAAAAATAATAACACATATTTTAGATAGGGGTTGAAC----CTGccaccacatttttaaaatgtgcttccAGCCAGCAGCTCTGAAGCAGGTATTTTTAGGATCCGTGGGGGAGCTGAAGAGACACAACCCAC---------------------------------------------------------------------------------------------------AGAAATGGGCTTCTTTAATCCCCATCCTCTTTTACCTGTTTCAATGAAATGGAAGTAAATAATCCAGAGGGACTTGGAGGGGCCAC---------TCTA---CACAGATGATTCAATCTGTGTCACGTACTCTGAAGGCACGATGGTCGCTGTGGGCTGGGTGGGAACCACAGGAAATCTTAGTTCAAAGGTGCCTGCTCCTTTGAAAGCACCTATCATCCTGTCTGGCACATCAGACACCCTAGGAAACGGGagcccctctcccttctctccagtCAGAATAGATCAGACCGAACAC-TGTCCCGACACAAAGGAAAGGCAGTCAA-GGACACCCAGGCGGGGATGGCGAAGGA----GCTTGGTGTGTTTTTATCCAGGAGA-CCTTCATTGACACTAATTAGTCTCTCCTTCCAACTTGAGCACGAGCAAACCTCTTCTAAAACACCAGCCATGTAA----GGCTCCCAAAGTGGGATTCTAACTAATGTTTAATAATTACTCTTATCATAACGGCATCTCTTTCCCACACGCAGAAGAGAACCTGCCTGACTGCCAGAGTGGTGTGATTAGGGGAGGAGGGTGTTTTTCCTGTCCATTCATG-CTCAGCTGACATTTAGCTGCATTCTGTCAGGACAAAGATCCTCACTTTGCATGGAGCACAGATGGGAACGCAGAGCTGCGGCAATCACAGGGCCGCTGCTGGCTGC--CCGAAGTCACGGCAGCCCCGTTTCTCTGGATACGCATAATATTCCCGGGCTGTAtggaaagtttctttaaaaagga

a score=6742
s chr3           159782336 235 + 160039680 CATCACAGCCACCAATCCCCAGCACTGCCCATTCACACTCAGCGGGGTGGCTGGGGATTAATTGGAGGGGGAATGTTGTGAATTCCAGAGAGTTCTTTCTCTTTGCCGCACAGTCGGTGGCCCGGGATATTGCTACATGAAAGCTTCGCTGTCAGTATCAATCATCATTGCTCGGTCTGTCACATTCCATGGACTGAATTGGCCTCATTTGATGACACCACCAAAGGGGGTTGGG
s HiC_scaffold_1 146914935 200 + 233722169 CATCAGAGCC--TGGGCCCCAGCAGGACCCTTCCTCCC----CGTGGGGCACAGGGATTAATGGGAGGGG---TGCTGAGAATTCCTGAG---TCTCTCTC---------CAGTCAG--------GATGTTGCAACATGAAAGCTTCGCTGTCAGTATCCATCACCCCTGCCCG--CTGTGACATTCCAGGGA-GGACTCACCCTCATTTGCTAACTCCAT---GGGGGACTGgg

a score=13100
s chr3           159791632 516 + 160039680 AATACATGTTTTCAAGAACCAGTCCATTTCTCTATATGTGATAATTTGCAAGTAAAACTAAGTGAATACACTAAATGATGTTATAGTCCTTAAATAAAAAGATGTGAAAAGCCTTTTCGTAACTCATGAAAATGCAATCAATA---------ATAATAATTAT----TTTTGAAACAAAAGTTTTTCAAATATTTACCATACTGGGTTGTT-TGTAGTTTACTAAATCTA-------AAAAGAATGTCATGTTGCAATAATTACACTTTTTTTT----------CAAATAAATTTAAGATACTGAACAACAAAAAAGTAAAATGTACTGTTTTCATGCCTTTAGGGCTCACTGGATATCAGCTGTAAAACATGTCAAAATCCTAGCCTCTTATAGTTCCATAGAGAACTCTTCTTTGCTGCCTTGCACTTCAGAAGT-CTCCTTTGATATG-TTCTGGCCTAATTTTCCAAGACAGAAATCTCAACCTG----TTTCTTCTCAGAAAA----TATGTCATTTCACTTTGAAGACTAAAATTTTTCAGGCCAAGGCCA
s HiC_scaffold_1 146921991 544 + 233722169 AAAACCTGTTTTCAGGCCCTA-CCCGCTTCTCCAAGCTCACCAAATTGCAGGTCA---TTTGTGGATTTCTGCATAGGTATTACTATTTTCCAAAGCCATGCTGTGAAAAGGATGTTTATAAGCCAGAAGAATATTATCAGTGTTCGTATTTCTAATGGTTATCATATTTTGAAGCAAGAATTTCAAAAACTTTTATGAGGCTGGGTGATAATGGAGTTTATTAAAtctgttttttgaaaaaattgCAATG---CAAtaattatactgtttttttttttctctccaaattAATCTAAGATACTGGG-----AAAAAATGAAGAGTACGGTTTCTATACCCTGGGGCCTCACCGGGTGTCGGTTTCTGAGTGTGTCAGAACCCCACACTCTCACAGTTCCAGaaagaattcatttttaatgCATCTCACACCAGGGGTCCTCTTTTGATGTGTTTCTGCCCTCATTTTTCACAAGTGAAATCTGAACCtatgttttttttcttggaagaaaACCACATCCTTCCGCTTTGAAG-CCAGAGATTTGGAGGCCAGGCCCA

a score=9843
s chr3           159812449 1048 + 160039680 CAGGAAAGCTTTGTTAAATAAATGGAT---------GCTTGGGGCTCTGTT------TCAAATGCCAACAACCTGAAAGTCTAACTTTTCCTCTTTTTCCCAATACAGAAGCCAAAGCT-------------ACTAGGAGATTCACCTTTCAGTAATTTTCACAAGCTAAATACATTGCTATTTATTCAGTTGCTAAT-TCTAGGCCCAGTG--------------TGTCCCTTTCAAACAGAATCAGAACCAACATTAGATATATAAAAAGCAGAAAAGATA----ATCAGCCAG---------AAGAGATGTAGATGCTACTAAACAAGGATTTGGGTTTGCTATGCCAAAGACTGTATAGCTAACTATTCACCAACTTTCCTTGTACTCTGCTTGAAATATGTTCCAGTATCTTTCTGCAATTAAATATG-CTTGTATATATAGTAGATAACAGAATATGAAGCAAAGTGAGCCACACCAATTGTAGAACTGCCCAGTAATTTCTCACTCCTCTTAGAT---ATAATTTTTGCTTTCTTTACAATTCTCCTGGTTGAATGACCATAAGCATGGGAACTCAGAAAG----------------------TTAAAGTCACAAGTATAAAAAGCTT------TTACA---------------------CCTACATCTT---TTGAAACAGCCTC-CTGCCAATCAGAAATATAT----------CTAAAGTTCTGAGAAGCAAACATTTTTTATTAAGTTATAGATAGTTTATCTAGTTCCTACAACCATACTCTTACATTAACTATTTCATATAAATATAAAGAAAGACTCCTAAAAATCATGGCTAAAAGGACCCCAGAAATTATCAAATC----TCTATCACTATTC------AGATAGGTATTTTAGAGAAATTATTTTTCAAACTAGAAATGGTTCTAGAAGTAGAGGCTAT-GTATGATACATTCCT-----TATTTAGGATTAACTGAAACTGTACTAAGTCTCAAAGTGCAGCTTAAAAATAATTAA------TAATTGAAGAGTTAATGAGTAGGGCTATATCCT-----AGCACCGAAGTAGCATCACTGGAACTGACTCTAGTCCTTTCTTTTGCTGAAC--------AGAAAACTCTGCTCTCAAGCAGGCTTTCCACTTCTGGAGGCAAAGTGTGCTTTAGAATCCTTAAGAca
s HiC_scaffold_1 146935619 1132 + 233722169 CAGGAAAGCTTTGCAGGACGGCTGAATCAccagtgtttttgtttctctgttcccCCGTCATATACAAAGAGCCTGGATATCTAATGTCTCTCTTTCT----------GTAGCCAAGCCTTGATGTACACGGGAGCAGATGAATT-CCTTTTAGCATTTTTCACAAGTTAAATAAACTA-TGTTTAACC---TGCTAATGCCTGGGCCTCGTGAGATCTCTGAATTATACTCCTTTCCAGGGGTGACAGAGCCCGTAGCTGGGACCTCAGAAGGAGGACAGATAGCTCATTAGCCAGCCTAAGTCTGAGACAAAGATATGCTACCCAGCTAGGA---AGCATGGCT-------------CAGGGCTTCCCATCCTCCAAACCTGTGTGCATTCTGCCTGACATATTTCTTAGTCTGGTT-TGCAGTTAGACATGGCCTCCTAATGACTCTGCTCACAGGAAGTGAATCGAGGTGATCA----------------TGCACgggaaattttcttttcctccacaacaaacagtatttgttttctttcctattccCCTGGCTTGGTGACAATACACACAGTGACCTAGTAAGCCATGGGTTAAAAACtgcagaatcaaaaaaaaaaaaaaaaaaaccctgcagaatCACAAGGCAAAATAAGCCTGAAATCCCTAAATCTTCACTTGAAGTAGATCCACCGCCTctcagacacctctgctgtggatGCTGTGTTAGTGAGAAATGAGT-CTATTCATTACAACTTAGACG---CATCTGTCTCCTTCCACAGTGGTCTTGTGCTAACTAATTCACACACACGTGGAGAAAGACTCAAGGGAATCAGAGCTGAAAAGACCCTAGCAATCATCACATCCGAGCCTATCAGTGTGCTGCCTGGGACACACAGCCCAGAG---------CCGAGGCCAGAGGTGGGTCTGGCACCCGTAACTGGAACGTCGAACCTCCCTCGTGCTACTTAGGATTCACTGAAACCATGTTGAGCCAAAAAGT---------AATTTATTAGCCCACTTAACTGGAAATGTGAGGAGTAGAACTGCAAACTGAACCAGGGCAGAGACAAGATCCTCAAAGTTTGGCCTTGGTCTCTC-TCTGCTGGTCTTTCCTCTGGGCGGCTCTATTCTCAGGAAG--CTTTCGTTTCTGGCAGCAAAATAT-CCCTGGCGGCTCTAGGACA

a score=19651
s chr3           159834319 888 + 160039680 GTCTCTTTCAAGCCTGGGAAACAACAAAAGGCTGGCTACTTAAAGCTGCTGG-----CTGCATCACACTAAGAGGCTTCTGGAAACCTATAAAGTTTTTTTTTTTTTTTAACCTGCCCTTCTAGGTTGCCTGGGTTCAAAGAGGTAATTTAATAAGAGAGACTATAATTAGGTGATTTATGGTTTGTTTTGTTTTGTTCTGCTCTCTGGGAACAGAAACTACCTCCCTTATAA---TTGCAACATTTTTTAAATGCCTACTCTGTGTTTGGCAC--------AATCACATTATTTTCTTTAATGTTCATCATTACTTATG--TTTGGTATTATTGATATTTTTAAATAGTTGAGAAAAGAGAAACTAAAGAAAATGTTTAAAGGGTAGGTCATATCC------TGTGTTATATAACCAGTAAGACATAAGGCTAGAACTAAATAAAGCTAATGTCTGGAATAAATATGAAAAGTGAATGGAAAGCCAAAATGGAAATCTTACGATGGGAGT----GAGGTCTA-AAGGGGGAAGAGGCTGAGGTGTATATTAAACAATTTCATATGAACATTATGTTGAACTATTTTTATTTCAAGAGTTCCTTTCTAAAGTTAGTGTGTGAAAGGATGCACTAGGAAAAATCCTTTATTTACATATAAAATAAGACAA----------------------------------------------------------------TTGA-----------------------------------GTAGGGGGGTAACACTGAATAGCAA-AGTGTGAACTCATAGTGAGGCTCATTCACACACACACAAATAGAAAATATCACCAACGGGAAGCTATCTGGATGTTTTTATGGATAAAAACTACCACAGTAAAAACAGAAG----CTCCAGAGTGGGTTACTATTCTTGTTAGATTCCTCCGGGAAGTAAATTAGGTTTTTAAAGAGGTGTATTTAATTATTTTAGATCTCCACAGATCATCTTCTGCAAAGA
s HiC_scaffold_1 146947428 947 + 233722169 GCCTCTTTCAAGTCTGGGGAACCGCAGAGGG--GGCCACCTG--GCTGCTGCACCTCCCGCCTCCCACTG-GAGGCTT-TGGACACCTATAAAGTGCCTT----------ACCTGCCCTTCCAGGTTGCCTGGGTTCAAAGAGGCGATTTCACAAGCAGGACTGTAATTAGAGGTTTTAtggtttgttgtgttttgttttgctctctggGAACAGAAACCGCCTTCCTTATAATATTTGCAACTTGCGTT---CGCCCACTCTGTGTTAGATGCCGTGCACTAGTTGCATGGTTTTGCTTAATGCTCCTAAGAAGCTATGAATTTGATATT----GTGCTTT-------GTAAGAAATGAGGGAAAAAATGAGA---TCCAAAGGTGAGCAATTCCCCCAAGTCTCTTTACGCCACCAGCCAGACACACAGCTGGGGTTGGATAAGTGTGCTCCCTGGAGCACATG-GAAGGGTGAAGGAAA---CTGGGTGCAAGTCTGCTG--GGGAGTATCAGGGGTCTACAAAGAACGTGGAGCAGTGGTGTGGATTAAACAGTGTCATCTGGAGGTCAGG-------------GTTTGCAGGGCTTCCACCTACTGTCAGTGCAGGGAAGGCTGTGTCAGGAGAGGTCTCTTATTTCCGTACAAAACAAGATAAGGGGGCCCCTGCTTCCACAcaccaggaaggaaggaaggggtggTTCTGTGTGGGGAAAATCATGTTAAGAGAAACTCTGCATGGAAACTCACAGAAGCACACTGTAGTGAAGTGACACTGAATAACAAGAGTGTGAACTCACAG---GATCTGCTTACACCT-----------AAGCACCACCAGCCACAGG------GGGGGCTTTGAGGGAGAAAAGCT-CTATATGAGAACCAAGTGGCTCCTCTAAGTGGGGTCACTGTTCTTTCTGGGCCCCTCTGGGAAGCAAAACAGGTGTCT-AAGGGGAGTCTGCAATTCTTTTAGATCTCTATGTTACATACACTGTGAAGA

a score=88244
s chr3           159838753 6066 + 160039680 [encoded data, 6943 characters]
s HiC_scaffold_1 146950653 6251 + 233722169 [encoded data, 6943 characters]

a score=7333
s chr3           159847211 161 + 160039680 AGGGCTTTCTTAAACTTCTGGTTAATTCCCTTGTATAGCTCAGGGGCTTTATCCAT-GATGCATATGTCTAAGAAAGCACAGGGAATTAAAAGAACAGATCAAGCCTACTATATTAGTTTTGGCAAAGCATTAAATTTTTTTTCTTTAGAaaataaataatt
s HiC_scaffold_1 146959363 158 + 233722169 AGGGCCTTCTTAAGTTTTTGGTTTATTCCCTGGGTTAGCTCAGGGG-TTTATCCACAGATCCACACTTCCAAGAAAGCAGAGTTAATTGAAAGGAAAGCCCAAG-TGACCACATTGGTTTTGGCAAGGCGTT--ATGATTTTCCTTTAGAAAGGAGATAATT

a score=63256
s chr3           159851245 1966 + 160039680 CTATTTAAATTTTTGATTAGGaatataataacattaaagaaattaaaagtaataaaaatagaa--aaataaatatttCTGAAA-CATCATTTTAATGCAACAGTTTTGTTTAATTTTTT----TCACCTCTGTT---------------------ATCTAAAATTCA---GCCTCACTAAGTAGAGACACTTAACAGAGGCTTTCTGTTGTCTTTC----TGCCAGCTGCACATTTACTTTAGAAATTTAGCAATTCCTCCTC---CTTCCTTAAAGCTCTGTTCTTCTA---AACTCAAGATTGCTATTGAGCCATTGAACCATGGGAAATTCATTTTCAAAATCTGCTTAATTGCTGTGAGACT--TTAATTTGTTCTGGATGATGGTGCTAATGTCTGGGAACTGGGACTGAAGCCCTCCGAAGTTGTTAATTTAATCAACCGCTGTGCCCTTGCC-----TAATGAAGGGGGCAC-CAGATCCTCCTCACAAAGAGCCTGGATCCCTCCTGACCACCTCCTTCATGATGAATAACAGAAGCCCCACAGTCAGGTTGAGCACTTGGGGCAAATTATCAGGATGTCAGTCCCCATTATCTGGAATCCTAGACTGAGCTTTCTCAA--TAACTATTAAGTAGATTTTATATAGGAACTTAAGAGTTTCTAAGGTAGGGTTTCTTATGTGCTTGTGTCCATATCTGCTAATTCGAAAAATTCTTTAAATCATTGAGGTTCTGTTGCAGCTGACG-TATAATCTGTAAGATCATAAACATCATC-TCAGACTGCAGAGATACCTGTTAACCACTCAACTTTTCCATGGCTAGA--CTGGTGAACGCTTGCTCTGGCCTCATGATAAATTAGCTTGTTTATTCCTCTTCTGCTTATTTCTATCCTGCTGTTGGTTAGTGTAATGAAGCAGAAGCCTATTGTGTATGTTCATTGGGTAGCAATCCTCTGGCACCAAAGAGGGTAATTGAGTAGAAAGGCGGA-TGCTGTTGGTGCATGGGAGAAGCTAACACCACATGAGGTCACCAGGCTTCCAGCTTTAACCAATGTGGACACAATGCAATTGAGATTCTGAAAAGGGTTTGTTTATAGTGTGAGAGTAAGGGTCAGTAGTTAATTTGAAATGCTGTAGGTGTGTTTTCCTTGAACCAAGAAGGTACAGAGCATGTGTCATGGAAGATTGTAAATATCCTCTGGGGCTGGGAAGGGGATAGAGTTGGGGGAGGGATTTAAGACAAAGTGTCCTTAAAAGTTCTAATATACTTATTATCCACCTCTCTGTGTTTTCTTAAAAATTTTGC---ATTCTTGAAAATTAGTTCACTATTGAAAAATTACTATATAAATCTGTGATTTAGAGGCACCAGAAACAACTTTAAAAAAAAATTAGAAGTAGTTCTTCATA-----------TGTGAAGGTATTGC-AGTCCTGTAAAATATAGTTAATG----------TTATTCCATTGAATGCACAAATTCAAAATTTGTCTTCTATAATTAATAGTTGTCCTAACTTTAATGAGATA--AGGACCATTAGC-ATCATATTTGTTTGTAGTGTAGCCTTTTGCCCTTTTTAGATGCCTTCCCCAGGCATATCTGTATTTTTTAATTTTTTGTGGTATTCACTTTGTTATTTACCTA--TTTAAAATTATAGA---ATCATGTTTTTATAATCA--CCTCAAATAATTTAAAG---------AGCCTTCTCCTATACTAGAGGGAAAGATTTCAAGCAAACATCTGTTTTTCAGAAATGAG-------------------ATCAGGAAAAAACATGGAGGTTGTGCAGGACGCAAAGGTTCGCCATAACCTTTATCATGCTTTGTGGAGTGTATGTTAAGTCTAGGCAATGCATTTGATATTCCtgataactcacatttgtagaaagcttttatcctt-cttcaaagtgcttttgtagaaatcaccttatttgatctt-gccaacagtcc--AGAATAGGGCA-GTCCACCAGGGAGCTTCACATTTAAAGTGATGGGATCTGAGAAAAGA----ACTATGTTTATGGCATATTTTGTTTGG
s HiC_scaffold_1 146965326 2008 + 233722169 ccatttatatttttgaacA--AACACAGTGATACTGGAGGAATCAACCACAGaggaaatagaacaaaagaagCCCTTTTGCAATCCACTTTGTATCacaataattctttaaaattttttcccttcacCTTTGATGGAATATTTCCAATTGTAGGCACCAGAAACTCAATAGCCTAACTTAGCAGAGGTAT-----GGGAATTTACTGTCCACGTTCCACATGCCGGTTGGGTGTCC-CCGTGGAAATTAAGCAGCCCTCCCTCAATCTTCCTCCAAGCACTCTCCCACTACTTAACTCGAGATCGCTGTTGAGCCACTGAACCATGggaaattcattttcaaaatcgGCTTAATTGCTGTGAGACTCTTTAATTTGTTCTGGATGGCGGTGTTAATGTCTGGGAACTGGGAGCGAAGCCCTCCAAAGTTGTTAATTTAATCAACCGCTGTGCCCTCGCCAAGCCTAATGAAGAGGGCAGGCGGACCCTTCTCACAAAAAGGCCGGGTCCCTTCTGACCACCTCGTCAGAGATGAATGA--GAGGCCCCTCAGCCAGGCTGCACGCTTGGGCCAAATTACCAGGGCGTCTGTCT--GTGGCTCCAAAGCCCAGGGTGGTGTGTCCCAAAGTAACAATCGAGTAGGTTTCCTTGCGGGACCTTGGAGTGTGCGGGCCATGATGT-GAGCGTGTGTGTGCTCACACCTGCTAGGCTGCAGAATTCTGTCA-TCAGCGCGGTTCTGAGGTGGCTTTGGCTGCAATCTGTAAGATCATAACCATCGCCCTTGGACTATTGGTATTCCCGTTAACCGCCGGCACTTACCGTGGGGAGAGCCTGGTGAAAGCTTGCTCTGTCCTCGTGATAAATTAGCTTGTTTATTCCTCTTCTGCTTGTTTCCAGCCCGCTGTTGGTTAGTGTAATGAAGCAGAAGCCCATTGTGTGTGTGCACTGGGTAGCGATCCCCTGGCACCGAAGGGGGTAATTGAGTAGAAAGGCGGAATGCTGTTGGTGCATGGGAGAAGTTAACACCACATGAGGTCACTGGGCCTCAAGCTTTAATCAATGTGGACACAATGCAATTGAGATTGTGAAAACGGTTTGTTTATAGTGGGAGAGTAAGGGTCAGTAGTTAATTTGAAATGCTGTAGGTGTGTTTTCCTTGAACCGAGAAGGTACGGAGCATGTGTCATGGGGGACTGTAAATATCCTC-----CAGGGAGGGACGTAA---TGGGGTAAGGATTGAAAGGAAGG-----------------------GCACGGCCGACCTCGCTGACCCATCCCACGCTTCATGTGAAGTTTTTAACCATC--TTTAATGTGAGGAGGCTGCTGCGCCGATCCATAGGCTAGAGGC-----AAAGCCCTATAACAAACAACTTCTTCTGGTTTTTAGTAGAGATTTTCTTTGAGGAAATATAGAGGGTGCTGGGACACTTTGCTAATAGGAGGACTGTGTACTCCTTT-----CCCACGTTTA-----TGTCTTCTGGCGTTTTTCATTGTCGTGACTTGAATGAAATGGTATGGGAACCAGCTACCCTGTACGCCTCCAGCTCTGGGCTTTCCCGTTTTAGGGTCCCAGTCCACGGCAGGTGTGTCTGCTCCTGTCC------ATATGATCTTTGGCATTTCTCTAAGTTTCCACATCTAGAAACATCATGCTTTC-TAATCAGTCTTTGGTGCATTTGAGGGTGAGAGGAAGTCTGCCCTTCTG--------------TGCCAGCAGACGTCTGGTTTTCAGACATGATGGGAGGGAAAGAACCAAACATAGGGAAAGGACCAGGAGGTCCTGCCGGAGCTGGAGGCCGGCCAGGCGCTCTCTGCTTCTCTGCTGAGAGTCTGCCAACACCAGGTGATACGTTTGATATTCCTGCTGCCTCACTTGGGTGG--CGCTTTTATCTTTCCTTCAAAGCACTGTTGTAAAAATCAACTCATTTGATCTTAATCAACAGCACTGTGAGCGAGGCAGGTCCACCTGGgatgtttacattttaa-tgtgGAGCCCCAGATGGAGAATTCACTGTGTTTGTGGGGTGCTCCGCTAGG

a score=43216
s chr3           159855268 3798 + 160039680 [encoded data, 4142 characters]
s HiC_scaffold_1 146968890 3603 + 233722169 [encoded data, 4142 characters]

a score=7555
s chr3           159868152 534 + 160039680 TATAGCTAAGGTAATTGCTAAAGTCCTGTCTCTG-----------CAGATACTCTTTTACTTTGAAATAACTGTTACTTAATTATGAAGTAATAATTTGTTCAGTAATCTGGTAAGATTTAATTAGCATGGTTGAAATACATGATAATTTCACCTTTAAAGTAAATGCAGTGT-TAAAACATGTGTTTGATCATTA-TAGCTACAG------------------------AAACTGAGTTAGTTGATTCATAAATGCTAAATCAGTTTAACACAAGTATTTGTATTTTCTGTAGCTAAACTT--TTTGAACTTCCATTCAGAGACACTTTTCAGACTTAAATATTT-GCT-------AATAACAATGTTTTCAGGAATTTATCTTGGATGGCTGATGTACAGGTTTGGCTC--ACAGTTATTAGCTGTCTGGGACATTACGATTTCAAC--CAAATAATATCTGTCTACTTAA-----GTTTTACAGTCTAGTTCATGTGTTTCTTTTTACTCATAATTAAGGCTTTTGAATTTATCAAAGGTTAAGAAGAGTGTCT---------CAGTGAATAATATTAAAAATCCAACTTTTAagt
s HiC_scaffold_1 146979946 581 + 233722169 TAGAGCTCCAGTAATTCCAGAAATCCCTCCTCCAGGTTAGGCTGACAGACATCTCAGTTCTCT--AGGAACCGAGACTGAACTGTGAATTAATGCTTTATGTAGTGATCTGGTAAGGTTTAACCGGTGCGGTTGACACACAGGAGAATTTCGCCGTAAA---GAAGGCAGTGGAGGAGGCAGGACCGTGACCATTATTAACCCCAGAGCAATTTCAGGCAAGGAATTAACAGACTGTGCCAGATAATTCCCAAGTACTAAGT-AGTTTAACACAAGTATGTGCACTGTCTTTG---AGATTTAGTTTGAAAT---GTTTGAAAGCA-TTGTGAGACTCAGATATGCAGCTCTGAGGGAAGAGGGGATCTTTCAGGA--CTGGCATGGGTGGGCAGCCCACAAGATGGACTCCAGCAAGCTTTAG-TGTCTAAAGCTTCGCCACTCAACCAGCAAATGTGACCTGGCCCCTTAAACCGTGCTTAAACTTCTATTCTGTACACTCCTTTTAAC-CAGGATTAAGGCTTTTGAgctggagaaagg-gaaaaggaacgTCTGAGAGGACCCAGTGGAACAGGTTTGAAAGCTGATTTCTAAAT

a score=24730
s chr3           159872447 896 + 160039680 agagctaagagaaatcttggaagttagccaacttgtttcatagataagagtcctgaagctcgcacagatgcaactaacttAAGTTGCAACCAGGTCTCAGAAGCAGTATCTAAATTCAGAGACTACTCTCTACAGTGCCCCTCACTCAGTCTCCCAGCTCTTGGAACA------CACTGGAATTTTGTGACAAAGATTTGAATGGATATGGTAACTGAATTAGATTGCTTACAAGTGTATGGTGTAATTAACTGGAAATACAATGGAAGGCTTGTGGAGATACTTTTGTGG-CTCTCTGGAGGTGACAAGAGGGTCCTCACTTAGATCTGGAGGATTTTAGAGTGATTGCTCCCCAGCTGTAGATGGCAGTGTACAATGGAAAGGAAGGCAGAACTGCAAAGAGCATCAGCTAGAAGTAGCCACTTCAGTAGAATCTTTTCTAAAACAAGAAAACACTCTCTT---TTCAGCTCCAGCACCCACAACAGCAGTACCCTACACGGCAATAAAATGTGTGGATGTCCGTAAGAACCACCATAAAACAAGATGGCTGGCGCCTTGGGGACCTAACAAGTGTGACAAGATCCGTGACATCGAGGAAGCAATTCCAAGGGAAATTGAAGCAAATGACATTGTGTTTTCTGTACACATTCCCCTCCCTTCTATGGAGATGAGTCCATGGTTCCAGTTTATGCTGTTTATCTTGCAGCTAGACATTGCTTTCAAGCTGAACAACCAAATCAGTAAGTACCCCAACTGCT-ATGGTCAACT--------------CTGGAATTTTCTTCCTAGGACTGTTATTGATGATGCTAACTccgatagttattagttgtttcctgcttcctgtgcactttctgagcccttcatctgaatcaacccatttgatctttcca--aatcccttgaggcaa
s HiC_scaffold_1 146986451 857 + 233722169 AAAGCCAGGAGGCATCTTCGAAATGAGCTATCTTGTGTCTCAGATAGGAAGGCTGAAGCTAGCAC-----CAAGTTAACCCAGTTG-----GGGGTTCAGATGC------CTGTTCCAGGAA------GCCCCAGTGCCCTGCTGCCAGGCAGGTAGGACCTGGGGCTATGGATCACTGAACCTCTGGGACATCAGTTGGGAGTGGAGAGATGACTGAACCAGGCTGTTTTCAGATGTGTGCTGGAA---GCCGGGTATGGGAT----------CGGGGATGCCTTTAAGGACCCTTTGGAAGTCACTGAAGGATGCTCACT-----------GGTTCTA-AGTGGCT----TCCAGCTGCAGAAGGCAGTGCACAAACCAGGCAGGAGCCACACAGCGGAAGAAATTAACCAGGAGCAACC-CCAAGACAGACACTTT---GAAACAGAAaatggttttcttcttttcagctCCAGGGCCCACGACCGCGGTGTCTTACATGTCTGTGAAATGCGTGGATGTCCGCAAGAATCACCACAAGGCGAAGTGGCTGATGCCATGGGGACCCAACCACTGTGACAAGATCCGACACATTGAGGAAGCCATCCCCAGGGAAATCGAGGCCAATGACATCGTGTTCTCCGTGCACATCCCGCTCCCCAACATGGAGATGAGCCCCTGGTTCCAGTTCATGCTGTTCCTCCTGCAGCTGGACATCGCCTTCAAGCTCAACAACCAGATCCGTAAGTG--CGAGCCCCTCACGGTCCCCTCATGGCAGGAAAGACAGGAGTGACCCTAGTAGGAGGCTTACTGTCTA-------CCTGATGGC--TTACTGTTTCACTGTTTCCTGAGCCCTTTCTGAGGACTTGACCTGTCTTAAACCCTGCAGTCTTCCCAGCAGTCCCTGGAAGTAA

a score=7797
s chr3           159879895 320 + 160039680 AATTACATGATAAGC--ATCATTCGTAAAGTTAAAGATTCT--------AAATATTACAAAATCTAAAACTTTCTTGAATGCTAACATGATGCTATAAGTAGAGAATTTCTCATGTAACCGCATGAAACAAATTAGAGTCAAAATGTAGGATAACTAAGTAT-TTATGTAAAATTTTAGGATATGTATA-TATATATGTAAAATA--CATGAGTTCCGTG----------TTATATTTGTCTCCTATGTCTAAGATACCTCACTACATATATTAAAATATTGAAAAATACAAATGAAAGAAAATAATT----------TTGGTTTGAAGTATTTTGGTTAAGAAATATTCGATT
s HiC_scaffold_1 221380515 346 + 233722169 AACTTCTTGATAAGCTAAGCATCCTTAA--TCAAAGAATCCCAAGCCCAAAATACTTCAAAATCGGCAATGTT-TTGAGCACTAACATGATGCCAGAAGTAGAGAATTCCACACCTGACCTCATATGGCAGATTACAGTCAAAATACAGGTGctctaaaaatattgtttaaaatt-----acCTTCACATTGTATGTATAAAATAGCTATGAGTCAAGGgaattttatgtttagatttgGATCCCATCCCCAAGAGAAGTTATTATGtacatgcaaatattccaaaattaaaaaaaaaattaaaaattggaaacTCTCTTGATTCCGAGTATTGCAGACAAGAAACACTCAACT

a score=9960
s chr3           159882709 426 + 160039680 gagaaggaaaGAGTCCCAGGACAGCAAAGCAACAGTATCTGCAGTCCATTGAGGACCAGAAGAAGCTGAATGCATTGTAT-GAATACATCCTATCTGCCTGCTGCAGCACTAGCTGCCCCAACTACAAATGGAACAAAGACAAGTAAGTACTTCAGACCTGCAGTTCTCATCTAGGCCTATGGCTGAATGATTGAC------TTCACAAAGGAATGCCTGG---------AAGCTGCATTACCTCTACTGCTGCCACACCAACATGAACTATAAACAAACTTACCCCAAGAATCTGATTCCAGGAAAAGTGATTGCTAAAATGAAGAACATAATGGTGACCTACAAAAAGAAAAGAGCATTGACTTATTAACCCTTTTCATGCGGAATGTGGCT----GTCAGCT----------------------TTGACTTGAATCACTTCAAGCACCCGGATTCTCCAAGAATA
s HiC_scaffold_1 172166225 456 + 233722169 GAAGAAGAATGGTTTTCAAGAAGGCAA-GCAGCAGTATCTGCAGTTCAAAGATGGTTGTGAGAAGCTGGATGGGCTGTACAGAGTGTATCCTCTTTGCCTCTTATAGCACAATACACCCCAGCTACTTGTGGAACAGGATCTTGTTCTTACTT-GGTCCTTCTGTTCTTACATAGGCTGATTGC--ACTGACTTACAGATGACTCAGGAAGAAGCACTTGGCCAAGATACAAGACCCATTCTTTCTG-TACCACCACAGTATCATCAGTGGCACACAGACTTGGCCTAGGAGTCTGAATTCAGGGAAATTGATGACTGAAGTCAAGAAACTGATGGCAATCTACAGAGAGAAGAATGCTTTGCTCTAACAG-----TTCCTATTGAACATGGCTTATGACCAGCTCAGAGCAGAACATAGTTTATAActaatttgaattccttcaag--TCTTGATTTTCCATAAATA

a score=8810
s chr3           159883150 554 + 160039680 AAATTGGAG-GTAAAAGATAAACTCCTGAAAGATGGCATGACCCTTCAGTGTGTTACCAATATGACTTATTTGACAAAGAAATTAGGAGTTAAGTCATTATGAAAA--AACTTGAAAATTACATATGTAACGTGGAACTGAAATGTAGATTCAAGATTGGAGACTAGATTGTCCTTTAATTAGATAGTAGCTGGAGACTGCATTTCTTCTTTTCTGTCTG---GATCTCTTACTTGGTGGCACTC---CTAACAGGAA---ACTACCTGTGA-AGTTTCTAATGGGAGAAGTCACCAAGCTGAGCTAGGCTAGGTTCACACTGGGCTGGCTTCAGAGGCAAGGAAATCCTACTCCCT---------TTGCTTTTCAACTACAGACA--TAGCTT--------------GGCTGAGTGACT--TGGATTCCAAAGGATGCCAGTAATTGTGGGTTTTAGTCACAGAAGATAAAGATAAGAGGAGAGACAGGCTGTTTTTTTCCACAATTAAATGCTGCCTCTCGGGTTCCTCTGTCGTTAAGAGTCTGAGGGTCAGGAACCTCCAGCCATATTATTTTAC-----CCCTGGATGCCTCCT
s HiC_scaffold_1 146997692 537 + 233722169 AGAttagagagaaaaagataaattccCAGACACAAACAGGCCCCG----------------ATAACCCAGCT----AAGAAATGGGGAGTTTGATGCTTGCAAAGAGGAATTGAAAAGTCACATG-----CATGGGGCTGAAGTGAACGT--GGAATTGGGAATTCGAGCCTC-----ATCACGCAGGTCCTTTAAATTATCGCTCTCTTCTTCTGCCTGCCTGCACTCGCCCTTGGTGGTGGTCGGTCTGATGAGGACAGAGGGTTTGTGACAGCTTTGTGGTGGGGAAGGCACAGAGCCG------GCTTCCTCCA------GCTGG-----GAGGCAGGTA---CCACCGCCCTGAAGCTTTCTCACTTTACAGCAGCAGACAGCCAGCCTCTGCCGCCACCACCAGCTGAGTGGCTGTCGGAATGCAG-GGCTGCCGGTAATTGTGGGTTGCAGTCACAGAGGAGATAGATAAGAGGAGCGCCAGGCTG-GTTTTTCCACAATTAAATGCTGCCTCTCTGTTG--------GCTGGCAGCCCGGGGGTCAGGAGTCACCAGCCCTATTATTTTCCTCCAGCCCCAGACCTCTCCT

a score=7940
s chr3           159885204 455 + 160039680 TTATTAATCTGTCCATCTCCAGGAAACCTGGGTAGCAGCAGAATATTCTCCTGTTGCCATCAGAGTTCCGCTTAG---GGAATGTGTGGCTGGGTAATCAAGCAGGGCTGGCCTTATCTGCAAAGAGAACTCTGAATCCTTAGTGCAATAATTTTCCACATTCACAGTACAAAGCAAATACTCTGTGTGAGTAAAACTGGCTTGGCTCCAGCAATAACACAGCTGTTGAAACAGCTTAGTCACCGGGGCAATGGAGACAGTGTGGCAAGAGAATGCTGGGGTGCAGTAAGCTGACATTTAGCTGGCTAGCAGGGGCTCTGAGAGCCAGAACAGATCTGTGGGAGAGCTATGGAGAGGCTGCTCCCCGCCCACAGGCATCCCCTTGTTTCTTTTGAAGCTGAGCCATAATCCCCTCCCTGGGCAGGGTGC-CTAAGGATGAAAACTGAACACATTTTATG
s HiC_scaffold_1 146999833 348 + 233722169 TTGTGAATCCGGCCACCTCTTGG-----------GCATCAGGACACTGTGCCAGGGCCACCAGAG--CCGAATGGCATGGAATGCGGGGCCTG------AAGGGTCACAGGCCTTATCTGCAAGTGGAACCCAGATCTCCTGG----------------------------------------------------GCTGGCCCGGCTCCAGCAACAACATAGCTGCCAAAACAGCTCAGTCA-CGGGGCGATGGAGCTGGTGTGGCCCTGGAATG--AGGGTGCAGGAGG-GGACATTTATTTAGCT------GGCCCTGAGagccaggcc--------------------------ctgcctcccaCCCACA-CCTTTCCCCAGTTTCTTTTGAAGCCCAAAT-TTATCCTTTCCCAGAGCAAAGCCCACTGCAGAGGAAG--TGAAATCATTTCCTG

a score=18165
s chr3           159885923 1339 + 160039680 ATCAGAAGGAAAAGCTCCAACCCTTCTGACTGGTGTTTCCTGGATCCCTATAGCAAGAGCATCTGCTAGAGCTTTATCCTGAAGTTCTGTGGACAGATCT-GATAAAATACTTTGTTGGTCACATAGGAATTTTGGAAAGCCTAATGAATTGCTAGAGAGCTACCCTGCTGTTCTTTCAGCCTTTGAACAGCTGACCTTCGTGTTTTTTCTTTATCCTGG------GCTCTTTTTGCACTGTTTGTTTTGGAAGTTGTTGAGTTAAATTAGCCATCTCTTTCCTTTCCTGGTTACAGTATGAGAATGCAGCTGTCAGTCTGTGAACACTGCCATTGTCTATTTTTAGATTCAGTGTGAATAAAGCTCTCCTCTCTAATTGCagagagagagagagagagagagagagagagagagagagagaCTGACTTTTACAAGCACCAAATCAGCTATTGTGAGTTATCCTGGGG--AGAAAGCAAAGGGTAGCCACTGTCTTTCCAATCCCTCTTTGTCAGGTGTGTTTTCTCTCTGCATGAATGTTGATTATGGTCAAATAAGAATAAG-TGTGATCACATTTGTTTTCCAATGTTTTAACATTTGCCAG-CTTGGATTGTTCTGTTTTCTCTGGCTTTTTTATGAAAAAAAATACT-ATAATTGAGTTC--------------AAATTCCTTACAAATTGTTTTTCTTTAGATGTTTTCTGTGTCATCCAATCACATAAAACAAACTGGGAGCTATGAAATACAATGGG-CTGTGATTTTCTCTATTTAGCTTTCTAACCAGAAGTCTTCTCTGTACATAGCT-----------GCTAGAAGTGCTTCAATAAGTGGAATACCATGGAATTTAGTAAAACTTGAACCCTTAGTCATCAGACTCTTCCTG-CTGCTTAGCCCTGT-ATTCCTTATAGTCACTCTTGCATTTCCT-TCATATTGAATTAATTTCTTTCTCTAATTATTCAGTGTTTTTTAGGGCTTCTATGGATTTTTAGATGTACAGCTTCTTTAATCTGTGGTTGCTTCTACCCCATTGTATCTTGAACTATTATACTGTAGTTAGTAGGTAGATATCACTTTGGATGAGCTGATTCTGAAAGTCACACCT-TCTGTGGTCTATTGTTTAACCCAGT--------GCTCTTAAACACTT----------TGAGCTACCTATATACATAGGTTTGCTTTTACTGCAGTGCCCAATTTTCCAAACTTactgtgattaatttgagggcaatgattttgccttatgca--tttttatccccagtactgttcatggaaaccagtagatgcttagaaatatttggttgagtaaaagaaGTCCTTTGGGATAGTACATCTA-GCATT----CAAGTTTCAGAGGAATATTAATCCTA
s HiC_scaffold_1 147000927 1285 + 233722169 ATTAGGAGGAACTGCCCTGTCCCTTCTG-----------------CCCCGTAGCAGTGGCCTCT---------CTGGCTTGCAGGCCTCTGGGAAGGTCTCTGCAAAATACCGAGGTGGTCTCCTCTGG-CTTTGGGAGGACTCATAAACCACTGCCCAGTGACCCAGAGTCCTCCTCTGCCTTTGAAGAGCGGACCTCACTGTGGGCTCCTCCTGCTGGCTCCTGGCTTCCTTGGCA---TTTGTTTTGGGAGTTGCAGGGTTACATCAGCCCCTTCCCTCCCTACTTACTGGAAGGGAGAGAATGAGGCTGTCACACCGAGTACACTGCCAGGGTCTATTTTTAGATGCAGTGTGAATGAAGCCCTTTTCTCTAATTGCATTCAGAGAGAAagag-gtgggggagggaggcaggTAGA-------TTTCACAGCCACCGAGTCAGCTCTGCCAAG----CCGAGAGCAAAGAAGCAAAGACGCCCGTCTGGTTTTCC--TCCCT--------GGT-TGttttctctgtgcctctgtgttGATTATAGTCAAATGGGAAAGCGCCGTGGCCGCCTTTGCCTCTTGGAGTCGTAAGACTTGCCAGCCTCTGACACATCCAGTTTCTCCAGCTTTGTCAGGAAAAGATGGGCTCCTCGTGGAGTTCGCTCCATGGGAAGTGAATTCCTTAGCAGCACCCTTGCGGT-GCCATCCTCTGTGGCATGCAATCCTGT-GAGCACACAGGAAG-TGGGCATTGCTCTGGGTCTG---TTTTCTCCATGGCGCTCACCAGCCCCACGCCCCCTCAAT-CCCAGCTCATCCTTTTAAGCAGAGCCTGCCTCGGTCAGCGG----CC---------------GCTTGGTCCCCACGTCCC----CTCTCCCTGCCTGTGTTGCCTTCCGATTCCCTCCAGTCTCCTCT---TTTCCTGCCCTATCGCATTGGTTTC---CCCCAATGACACCGTGTCACTTGGTGCTCACCTGACTTCTTAGATAGGCGCCTTCCTCTGTC--TCACCAGGCCCACCCTGCTGCCTGGTGAGCT----CATCGCA--TCACAGGTGGACATCGCCTCTGCTGCACGGGTG-----------ACCTATCTGTGTTCTTTGTCCTCACCCCATCCCACACGCCTTCTGAATTCTTCAGTGCAGTGTGAACTGC--ACAGAACCAGGCTTGCCTG---TGGGATGCCTGCCGTTCCCACCACACTGGGGACAGTCTGAGGGCAGTGG--CTGCCTTACGTGACCTTCGATTGCCTCTGTTGTGCGTGGAAACCAGGAGATGCTAAACAGTCTTAGGTGG------AGGAGCGAGTTGAGATGCTTTCTCTATGCAGTGTGAGAGGATTTGGAGGAATGCTAATTCCA

a score=5111
s chr3           159891614 146 + 160039680 CTGGTTGGCACCCGGCATGTAGCCCATCTACAGGGACATGGAAGAGTTGTCGCA---CTTGTCAGTGCCCAGCTTGGTGTCATAGATGTGCCTCCGGGTCCCTGGAGTTGTCATGCCCACCTGGCTAGCACACTTGTTGGTGCCCATCT
s HiC_scaffold_1 101889365 149 + 233722169 CTGGCTGGCTCCTTTGTTGGTGCCCATCTGCAGACTGATAGTGGTCTGATCAAAAGGTTTGTCAGTTTGCATTTTGGGATCATAAAGATGCCTCCTAGTTCCATAGGCCGTCATGCCTGCCTGGCTGGCACATTTGTTTGTTCCCatct

a score=6728
s chr3           159891724 155 + 160039680 TGCCCACCTGGCTAGCACACTTGTTGGTGCCCATCTGGAGGCTGATGGTGCAGAAGTCCATGGGA--GGCAGGACGTGGTTCTTGGGGTCATATAGATGTCTCCTGGTACCGCAGGTTGTCATGCCAGACTGGCTGGCACATTT-TTGGTGCCCATCT
s HiC_scaffold_1 101889358 156 + 233722169 TGCTTACCTGGCTGGCTCCTTTGTTGGTGCCCATCTGCAGACTGATAGTGGTCTGATCAAAAGGTTTGTCAG--TTTGCATTTTGGGATCATAAAGATGCCTCCTAGTTCCATAGGCCGTCATGCCTGCCTGGCTGGCACATTTGTTTGTTCCCatct

a score=5014
s chr3           159892022 114 + 160039680 TGCACCTGTGTCATATTCCCGCTCTCAAACAGGTCATTGGCTTCAAACAGGTCCACAGGGTTCATGCCATAG--CTGACCATGGCCTTGATGAAGTTGGAGAGATTTTCTAGCTGG
s HiC_scaffold_1 101891756 114 + 233722169 TGAACCTGGGTCATGTTTCCATTCTCAAAAAGATCATTTGCTTCAAATATGTCATGTGGCTTCATACCATAAGCCTGA--ATAGCTTTAATGAAGTTGCCAATATTTTCCAACTAG

a score=20139
s chr3           159895778 1721 + 160039680 GGTTCACTTTTCCAGAACGTTCCTTCTGTGGGAGTTTAGGTTTTAT---CTATCAAGAAAGTCTAC--TTTCTTTATATTAGATAGTAATTATGAGTCATCTTTAAGCCACACTAGACTGGTAAATAGAAAAGTCATTTATATCCC--TAGTAAT-----TTATGTGTTT---------------------AGCAGAGATTTATTAGGTTTGTGCCACATACTATGTAGTATGTGGTTCTTCCACTAACCTGACCTCTGTTAGTCATATTTTACTTTACAAATCAATAAAGTTAGGACTTATGGCTAGTATTTTACCTAGAATTGATTCCAACCAGTGGTGGCTGGTCCTCTATTCATTTTCAAATGTAGGATTGTGCTTAATTTCTTTATTTTTTACTTCATTAAAACTATCTATTTGTGAGCCTTCTCACCATAGTATAAAACACTCAAAAATTGATAGATAAAATTTTTG----GATCTAATCTTTTTATTGGGAAGTGGTAAATTAGTCCTACCATAGTCTCTGG--------TGATGTGGAAGT--GTATGTACATC---------------TACCTATAATCACTCTCAATGATTAAGTCTTTGCTTTTAAAGAA---------------ATTACTTTTGTC-ACAATATAAAGAAGAAAATTTTAATTTCAGAGAAATAGTTTATCTTATAAGTGAGACCCTTTTGGGTACAGTTTTATGAGGGATAGTTTCAGATAAGAGTGTATCCAGAAGTGT----------------------TATATCTTAGTTATTTTTCTGC--------TACTATTACAAGTGGAGAAAAAAGTTTATTTAATATATACTTTGGGGAGTAAACAAGCTATGATAAAATGGTTCTATCTGTTCAGTCTGTC-TCAAGGCCTCCTATGCACATATCAACATGTTGAATATCATCGCAATAGGAGTATGTGTAAAAGGGA---GCAATCACACTGTGAGAAAGGAAACGAGA--TTGAGATGAGGTCAGACTATTTTT-TATGATAAACTATTCTTATAGAAAATGATTCTCAAAAAAAAAAAGAAAATGATTCTCTTTTATTAATTCATTCTTGAGGATAGAAAGCACAGTAATCTAATCAAAATCCACTAAACCCCACCCCTTAAAGCTTTTACTATTTAAACACTGCTCCATTGAAGGCAAAACCTCTTAGGATATATTGTCAAACCATTTCCAAACTAAAACAGAGTGGTAAGAGGAAAAATAAACAAGCAAACAAGCaaaagaattatgataatcaagtatctaaggcactttttgtagaaataagtgatatggcaacttctatgtggttttaaag-gcatattttagaccagtgattcaagttataggaaggtaagttccAATCATGATTCAGATTCTGAGCATCTGAGCTGC-----------TTGAGTCCTTATCTCTAGTAGAGTTTGAATGGAAGTTCTTGACTGCAAAGGGTAGGCTATGGAAGGAGATCTAACATCTCTATTAGACTTTAGTCCTATGCCTTCAAT----------CTTTAAGTTTGATAATAA---CATCTCATTTATTTTCTTGGATTCCATGGCATGGCCTGTGAACAT-TTTGGAATGTTTCCAAATTATCTTTCTCCAAATCATTTCTGAATTGTCCATGTTTTCTCTTGCAGGAGAAAATGCAGAAATTTCCATGGATGTTTCCCTGGGTTACCGTGATGATATGTTTTCTGAATGGACTGAAATGGCCCATGAAAGAGTACCACGTAAACTCAAATGTACTTTTACATCCCCCAAGGTAGGGCACCTTTATTGCTGAGTTGACAGTGTTGGATTCTTGGC
s HiC_scaffold_1 147007043 1559 + 233722169 GGCTCGTTTTTCCAGAACATTCCCTCTGTGGCAGTTTA----TTATGTGCTATCTGGAAACTgttccatttaattttaaaacatcgtTGAAGTGAACCAGCTTCAGGCCACACTAGACCAGTGCATAGAAAAGTCCTAAGTTTCCCAATAGCAATCACTCTTATCTGTTTTCCTTTTGCGTATTCGAGTTCAGTAAACATTTACAAAGCACCCACTGCGTCCAGGGCAGCATACGGTGCCTCCACAAACCTGACCCCTTGTAGG-GTATGTACACTTACTGA-----AGAGTGAGGA-----GTCCAA------ACTTAGGAGT-----CCCCCGGTGGTGGCTG-----------CTGTGGAAATGT-GACTTGTgct--atttgtttgtttaagacCTC----------TCTCTTCTTGAActt----aatatagtataaaac--tgacagatc---aggtgacatttttttattAATCTGATGTCCTCAATGAGATATG------------------AGTTTATGGCCCTTATTTGATGTGGAAGCAAGtatgaatattatttttgctGTTCTATGCTCTTTATTTCGATCTGTGTGTAAGTCTGTAATTTTGGAAGAGCCCTTTGCCTTTGCATTAATTTTGTCCACAGCGTGAAGAAGGGGTTTTGAGTTACAGAGCA------TATTCTTTATTTGAGGGTCTCTTGGGTAGAGTTTCAGGAAAGAAGCTGTTAGGCCAGCATCTATCCAGAGGAGTGCAGCCCCAGAGAGACTCATCTCACATCTGAGCAGCATGTCAGTACATACAGCACTGTGACCA----AGAAAGAGGTTTCAGCAGTTCACAGCATTGGAGGCTATCAGGGCAAGATCGGGCAGCCCCGTCAGCAGAGCCTCTGGTGCAGGCCTCCGGCTC-CATCCCAACATGGCGGACGGCATCATGGTGGGAGTG-GTGGGAAAGGGATGGAGGATCCCATGGGGAGATAAgaagtgggaggctgaggagaggcTGTGCTTTCTTTCTGTAATGACCTGTTCTTGAGGGAACTAACTCCC--------------------------------------TCCTGAG----------------------------------AGACCCAACCCACTCA---------------------------------GCAAGACC-------------------AACATTC---------------------------------------------------------------ATCCAGTGCTTC---CACGTT---------------------CACCTTCCATGTGGCTCCTGTGCACAGATCTAGGCCCAGAGGCGTGAGTC-CAGGAGGGCTGGTCCTCGACCTGATGCAGGACCTGGCCTTTTGAGCTGCCACAGAGCCAGTGAGGCCCTTGTCTCTGGAGGAGTTTATGTGGAA-TACTTTACTCTGGTAGATTGCCTAAGGGAAGGGATCCAGTATCCATCACAAACTTCCATCCTGTGACTTCCATGTGGCTCAGGTTTGGAGTTTAAGAACCAGTGCACCACCTTTGTCTTGCTGATTCCCACA-CGCAGCCTTGGAGAATGTCTGAGCCATTTCCAGAGAATCTTCCCAAAGCCCTTCTCTGAGCCGTGTGCCTTTTCCCTTGCAGGAGAAAATGCAGAAGTGTCCATGGATGTCTCCCTGGCCTACCGTGACGACACCCTTGCTGAATGGACTGAAATGGCCCACGAGAGAGTGCCAAGGAAGCTCAAGTGCACCTTCCCCTCCCCCAAGGTAGGACGCCTGGATGTCGCAGCTGAGAACCTTTCATAGTTGGC

a score=16804
s chr3           159899042 457 + 160039680 TTTTTCACTTTTCTTTCACATTGGGAAGTGTGTGT------GTGTGGGGGTGCTGCCTGCAACTGCTTCTCAATGACAGGTACTTAATTATCTTTAGGATGTGTCTATATCCTTTTGGAAAGGGATTAAACCTTGTAAGGTATGAAGAAAATGAATTATCAAATCTATACATTTTGATTATGATAAAGTTTAATCTTGATTCTAAAGATTAAATGAGAAATTGCTTTAAAGC--TCTTTAGTCTCTAGTGGATTGTGAATTCAAaataataataataataata----aAGTCAAGTCATTACCTGCTGTAATTTGCCCTAATTAGACAGTCTTATGCTAGAGCTAaggaaggatagggagggtgagaggaagggaagggagaaagggacgacaggtgggagacagagagacagggagAAAA--------------TAAGTGCTGTAAATACTGGTAGAGGCAGAAATTTAAAAAGAAAACCTC
s HiC_scaffold_1 147010611 444 + 233722169 TTTTCCAccttcccagcacacagggagggcagggcaggacagAGGGGTGGGAATGCCTGCCCCCGCCT---GGTGACAGTCTCTTAATTATCTTTAGGATGTGTTGATCCCTTTGGAGAGACATATTAAACCTTGAAAGGCGGGAAGGAAATGAATCATCAAATCTGTGCTTTTTGATTGCAGTGAAATTTAGTCTTCAgtctgaagattaaatgagaaattGCTTTCAAGCTTTTTTTAGTCCCTGGTGGAttgtgaagttaaaaaaaaagaaaaagaaagaaagcaagtcaAGTTGCCACCTGCTGCAGTTTGTCCTAATTAGCCGGTCTCATGCCGGAGCC-TGGGAGGATGGAGGGGGTGGGGG----------------------------agcaaacagagaaagagagagaggagatgtCTGATTTCTTAAATGCCCTAAATACTGGCAGAGGC-------CACAGGAAAAACCTC

a score=13109
s chr3           159901352 202 + 160039680 CTGCCTCAAACCATCTAATCTTTTTCCAGACCCCAGAGCACGAAGGTCGTTATTATAATTGTGATGTCCTTCCTTTCATGGAAATTGGGTCAGTGGCTCATAAGTATTACCTTCTAAATATCCGGCTACCTGTAAATGAGAAAAAGAAAATCAATGTTGGAATTGGGGAGATAAAGGACATTCGGTTGGTGGTAAGTGAATG
s HiC_scaffold_1 147012649 202 + 233722169 CTGCCTGAGACCCTCTGCTGTTCTTCCAGACCCCAGAGCATGAGGGCCGCTACTACGAATGTGACGTCCTGCCCTTCATGGAGATCGGCTCCGTGGCCCACAAGTATTACCTGCTGAACATCCGGCTGCCCGTGAATGAGAAGAAGAAGATCAATGTGGGGATCGGAGAGATCAAGGACATCCGGCTGGTGGTGAGTGGATG

a score=13339
s chr3           159906762 506 + 160039680 AATGACTTGTGCTTTTTG--CTGTTCTCATTTAATGGCATGTTATGAATATAAAT--TTAAATCTACTTTCTAATACTGCTTACTGGACATATGTAATATCTTCAATGTTTGAATAAAGACATTCAGAAAAATCTTTGATTTTGATCCTAATTAATACCTTGGCATAGA-ATGCCCATATTTAATAGTTTCAGTATAT----TTCTATAATTTTGAGGAGGAGTCAGAGGGTATATAAGGTCAGTACCTTCTATAACGATGAACACTTTTGGTAGACAAA------------------CTGCTTATTTGTA-----------TTTAGTTCTAAAAAGAAAAA----------AACACTAATGTATTTTCATCTTCAAAATTATAATTGGTTTTTCTTTAGGGAATCCACCAAAACGGAGGTTTCACTAAGGTATGGTTTGCTATGAAGACCTTCCTTACACCCAGCATCTTCATCATTATGGTGTGGTATTGGAGGAGGATCACCATGATGTCCCGACCTCCAGTGCTTCTGGAAAAGTAAGAACTGATTCAGA
s HiC_scaffold_1 147013446 545 + 233722169 AGTGACCTGTGTTCCTTGagttttcttcatttcctgcCGTGGTATGGATGCTGCTGCCTAGATTCACCCTCAGGCATT--TTGCCAACCTTATCTCAC----TCTATGTTAGGGCGAAAACCCT-ACAGAAGTCTTTGATCATTTTCTTAATCCTTCCCTTCTCCTGGACAGGTCCATGCTTCTGCTGTTTAGTGTATGTGTTTCCGCAGCTCTGGAGGAGCGCTTAGGGGCAGGTGAAGGCCATTCCTGCCACGCTTAGCAACACTTTTGATCTCCAAAGCTTGGCACACGGACTCTCCACTCACCTGTAACCTGAGTGCATtcaacagcaaaaacaataataataataataatacaaagatgTATCCACCCTCAAAATCCTGCTTG-TGTCTGTCCAGGGAATCCACCAGAATGGAGGCTTCACCAAGGTGTGGTTTGCCATGAAGACCTTCCTGACGCCCAGCATCTTCGTGGCCATGGTGTGGTACTGGCGCAGGATCTCCATGATGTCCCGGCCCCCGGTGCTCCTGGAGAAGTAAG-GCTGACCCTGA

a score=15435
s chr3           159908176 1650 + 160039680 tccccatattagtgaaaagcaactcctctcttttacttgctg-gactggaaagaaggaagctacgcaatcagtattctacttgctattcacacttctatccaatctccaggaagtcttaccgtgtccactgctaccaccctaatctgatcacccacatcattgctcatctgagttatgagcaacctcccaactgctcctctttcttgcactattttcttcattataatttattcatccaa-aggctctgtgctcact-ttaagtgtcaataagaccatttcacttctctgctgaaagtgctccattaacttTGCCT------------------TGTCCCATAAATTCCACTGGATTTTTATCTCCTGTTCTCTGCAGAACCTGTGATGGTGCTCAAAAATTTCCATTCTacgctttc--------accccagggcctttgaacttgttcttgttatctcaagtagtacttcccagctaccttaatacctcatttactcctttccttcaagtcctgttttaatgtttcttgttacagtgtttttcccctattcaccctatgtgaaatc--actctccattctttctctt-----gatttatctttccttataacTTTA--------------------------------------------------AAGTTAATA----TTTGTTGAGGGAATAA----ACGGTGTGATTCTATTATTTAA------ACTTGGATTGCTAGTCTCTTTTAAGATTAACTT---------------TATGTAAGTTTCTTAATGAATTCATGCCTCTCTTATTTCTCTGCTCTCATGTCCTATCATTTCCTAACATGCGCTACATGTAGATCTGTAAATATTCCTGCTTTTTTCAAGCCTCTTTGCATCCCCGTAGA-------------CTCTGCTCTCTACCACATTTCACCT-------------TTAGTTCCT----------------CAATTCTTTATG-------------CACT------------TAGTTTCTGTCTCTTTATTTGTTT----------------TTCCCAATAAATGCAGTTCCCTGGGAAGAAACATTGGCCCTTCTCATATATGTATCTTTAGTCTTAACAGTATTCTTGGTATATGGTTTATGCCTTATAAGCATATG-----TATGCTTTGGATATGAAAAGTATTTA-AATAAATGAGAATG-------GTTTTTTTAATAAAGAAGGAGCCATTAATAGTATGGTGGAGAAAAAGCAAAATAA-----------GTAGCCAATTGAACTTATGTGTTATTGACATTT------ATTATTGAAACAAATATACTTACATAATTACGAG--------------ACATTAAG-----GATATTGTAATGACTAATGATGATTGGATCAGGAATCCAATGAAGAGGTAAGAGGGTACAGTTATCAAGCATATCTATTTTAGAAGGCAATAGAGTATGTATCTCTCAGGGGGCTACATTTAGATATGCA---GGAGGTAGTGTGACATCATCTTTCTGCAATGCAAACTAGGACATTTTGCATTTCATGGTGGAAATTTACCATGAATGCTAAGAAATTGATCAATTGGCTAAACTCT--GAACAAATAACATCTCAGTTCTCAAAATTGGCTTCAGAGTTTTAAAGTCTGCCATCCTGAGTAACCTGGCTCTTCTGGGTGTTTTCCCACCATCAGAGTCATCTTTGCCCTTGGGATTTCCATGACCTTTATCAATATCCCTGTGGAATGGTTTTCTATTGGATTTGACTGGACCTGGATGCTGTTATTTGGTGACATCCGACAGGGCATCTTCTATGCAATGCTTCTTTCTTTCTGGATCATCTTCTGTGGCGAGCACATGATGGTGAG
s HiC_scaffold_1 147014628 1706 + 233722169 TCCCCATTTTAGTGAAGGGCAACTCCATCTTTTCAGTTGTTGAGGCTTAAAAGGTGGGGGTCACCCTGTC--taccct-ctccctctctccactTCTCTC-ACCCACTGGATAATCTCACCATTTCTGTGGGGACCACCTGAGCCCGTCCATGTCCACGAC-----------------AGCAGCCTGGGACCTCCTCCCCTGGCTTCTGCTGTTTCCTCC-------TAGACTAATCCAGGAGCCTCAGTGCTTCCTGCTGAGTGTTAATCAGATCACATCA--TCCATGCTTTTCAT-CTCCTTTGCCCTTGTCTGCAGACCCCTTAATGATCTGGCCCTCAGCCACCTCTGA--TCTTATCTGTTCTTCTCTTCTGATCTTATGAT----CTTATCTGGCTCC-TTTGATGCCTGCTGCGGGCtgctccagggcctttgcacttgct---------------ggtCCTTTCCGGCTATCT--------------------------------------GATGTTTCTCATCCTAGAGGCATTTTCAAATCCACCTTATATAAAATCTCATCCCccatccctcttcctcctctgacCCAGCTTTGTTTGGGTCTTTACTTCTCTCATTCATGACTATCTTCCATGTCTAGAATAGATTGGACAAAGGAGTTTAATGGacgtttgttgaatgaatgattcAATCATGTAACTCCACTCTTGAGCTTCTTAATTGGATTCACAGTCTCTC--AAGATAAGTTCCAATTCCCTGAAGAGTATGTGAGGCACTGAG-GAGCTCA-GCCTCT-TTATTTCTGGGCT-----GTCCCCTGGTCTCCTGA--TGTGCTATTCACAGATC----ACCAGTACTGC-------AAGCTCCTCTGGGTCCCTGTGGCTCCAGCCCAGCCCCACTGCTCCCTCCTGCTCCTCACCTGGGCTACTGAGGCTCAGCGCCTGTCCCTACCCAGCAGCCCAGTCTTGGTGGCAGCCTTCCGGTCACCACAGTGTGGCGATGCTGCTTGTCACTTTGGTCATTTAGTGTGCCTGTCACTCTCCCCAACTCA-GCATGTCTCCGAGAGGCCCAAGCTGTCCTTTCGGGGTCTGTCTGTCT---CCTAACACCACTCCTGGTACGGTGTCTGTGCTTCCTAAACCCGTGGGCCATATCTCAGGGGTgtgaaaagaaatcagaataaaTTGAGATGCAGGAGCACAACTGTCACAGAGAAGTGGCAGTGGACAA-ACGGACAgcgaaaagcaaaataaaacctcaaGCAGCAGCCCAGAGAGTTGGTATTTCCTGCGCATTTGGGGTTATTAGCAAGACAGGGGTGGTTACCTAATTCGTAGCTGGTGTCTCTCTCACAGTAGGAACCTGAGCTCTTCATGGACAATGGACACCCTGTCCA-----CAACGGTCGGGGATAGGGGCCCCCTTG------GGGTCTGTCTAAGGAGGTGA-AGGGTAG---------AGGAAGCCAAAGTTAAGCGGGTGTTTGGGGTGAGGGTGGC--CGGCTGTCTGCACTTCG-----------------------GGTGGGCACTCACTGTGTCTGCTGCAAAGCCAGTCTGCTGGCCGGGTCCCAGGAAGGGGCAGCCTCC--------------------------TCCGAGTCTGCAGAC--GGCTCAGCCGGCTCTG--GGGCGCCTCCTCCCCA-CAGGGTCATCTTCGCACTGGGCATCTCCATGACCTTCATCAACGTTCCTGTGGAGTGGTTCTCCATTGGCTTCGACTGGACCTGGATGCTGCTCTTTGGGGACATCCGGCAGGGTGTCTTCTACGCCGTGCTGCTGTCCTTCTGGGTCATCTTCTGCGGGGAGCACATGATGGTGAG

a score=15697
s chr3           159911282 647 + 160039680 TTTTTTTTTTTTTAGGATCAACATGAACGGAATCACATTGCAGGGTACTGGAAGCAAGTTGGACCAATTGCTGTTGGCTCCTTCTGCCTCTTCATATTTGACATGTGTGAAAGGTGAGCAGATATCAGCATCACTCCAGGATGAAATGTACCTTTCTATGTCTACTTCTA---TCTTTCTAGGAAGAATTTTGAAATGAAGCATGGTGGTTGGGGATTCATGGGATGGAATATTGGAGAGGTCAATATCCACAGATGACATATGGGACTAAGTCAAAGGTTTAGTCCTTTATATAT----------------------GCAAAGTGCTTGCCATATTCTAAAGCTC-TGCAT--CTCCTTATA-------------------------CTCTCTGAAGTTTATTT---TCTAAATAT----------------------AGTACACTCACACTCCTCCCATA---------------CTCACCATGTCTCACTTCATTGTTGCAACACTAAGAGAGGCTCTGTTCTGCCTTTGTGTTATCTCTTCATCTTGTTTGGTTTTGTTTTTATAGAGGAGTACAACTCACAAATCCTTTCTACAGTATCTGGACTACAGATGTTGGAACAGAACTGGCTGTATCCTTACTCAATTCATTCAAGGCTTCATTTTTCTCTCCCTATCTGCCTGGTCCCCATGATCATTTTCTGTGGCTCTGCTGATACTCTCTGTGTGAGCTCAGcc
s HiC_scaffold_1 147017995 709 + 233722169 TCCTCTTCCCTGCAGGATCAGCACGAGCGGAACCACATCGCCGGCTACTGGAAGCAGGTTGGCCCAATCGCTGTTGGCTCCTTCTGCCTCTTCGTATTTGACATGTGTGAGAGGTGAGCAGGTGCC--CCAGGCCTCAGCACAAAAGGTGC------ATGACCTCCCCCAATCTCTTCCAAGGGTCAGTTTGAGAA--------GGTGGTTGGGAGCCTTTAGGAAGTCAC-TGGGTGTGGTC-ATGTCTTCAGGTCCAGACTGGGCTTCAGTCCAAGCTGTGggcctttatttgttttttcccagcactggggatCAACCCAGGTCCTGTTGCAGCCCCAGGTCCATGCATAGCCCCTTAGAGTTGCAAAACTTCTGGGCCATCAAGCTCTCTCCAGCTTGTTTCACTGTGGATTTGTTCTCTGTGATGCTGCTGGTCAGGGCACAGCTCCTCCTCCCCCAGCTAGAGATGGAAAGCAAACAAAGTCCAGCTGCTTCGCCTTAGCAGCA-----------GTTACACCCCGGCTTTCCCTCTtggttcttttcccttttttctctgtaGAGGCGTGCAGCTCACCAACCCTTTCTACAGTATCTGGACCACGGACGTTGGCACGGAGCTGGCTGTATCCTTCCATGATGCGCTCGGGGTTTTATTTG--TTCCCATAGCTGCCAGGTTCTCAAGATCATGTTCCAGAACTCAGCTGATGTTTTCCATATGTGCACAGCC

a score=22738
s chr3           159913636 1957 + 160039680 CCTCAAAACCGCTTGAACATTTGGAGACAAAGTTGAATGTTGCCAACACAGCTGAGAAGAGTGC-------TGTACCCTCTTAGCACAGGTTCTTGGTGAACTTAACCTTTCCTTCACTGTACACTTTCAGATGGCTTTCATCATTGTGGCAGGTATCTGCCTCTGCCTCTATTTCCTGTTTCTGTGCTTCATGGTATTTCAGGTATTTAGAAACATCAGTGGGAAGCAGTCTAGCCTCCCAGCCATGAGCAAAGTCCGGAGGCTGCACTATGAGGTAAGCACCTATCTTGACTTATTCTAGAGCTAATGCTCATAATCTCCAGCTTTCCAGACTTGAAAAAAATCAATAACTGATGTGGGGGGGGGGGgtatgtgtgtgtgtgtgcatatcacaccataagtgctgaggtcaaatgacagctgtgtgggttcagctctctacttatggattcaaggggttaaattattaaattcaggttgctaagtatgagtggcaaatacctttatcctctgagcaaactttctgacccATGCTTCCCAGACTCTAGTAGTTCACAATCT-CTAAAATAGCTAGTGGCTACTTGTATAGAGTTCAATAATCTGCTTATAGGCCACATCCCTT----------ACTCAAGATAAACAC---CTAGCCTCCTCCAA---TCTCTAATACAGGTGACACATTGATTAGGTTCATTGTGTAAA------TGGCTTGCTATGTAAAAGAGAGGAAAAACTGCAGAATCAGGGGATTCTGCATAGCCAATCTGCACAGAAAATACCCTAATCAGTAAACATCAATCCTGAATTTTTTGtatttatttatttatttatttatttatttatGGAAACCA-AAGTACTTTATCAAGTTTGTATGTTTTCAGAGCTGGAGTGACAAGTGAGAAAATTCAACCAAA----------------------------------------------------TTGGTTTCACTTTTA----TTAATATG------------------CACCACATAC----------------------------------------------------ACA-------------ACTGGAGAAGAATTTTATTACAACTGTAGGTAACTTGCATTTGGTAACTTTGAACCTTCATGGATAATTATATAACCTGATTA---TAGTGAAATTGACAGCCTCATGACCTGTTGTGAATGTAATTGCCTAGGCTCCAACATCACTGTTTCATGAGAGATAAAAACATATGAAGTATTTTGTTCAAAACTTTCCTCAGTCACATTTACCTCTGCAAGAAGGGTATTAATATGTGAAATCATTTTACTATCATTCTTAGATATTTGGTTTTTCAGATTTTTATATATACACACACACACATACATATGTGGAGAGAAAGAGAGGGAGAAATGAAAATGTATTAAAACGCTCTTCCTATCTTTCCTAATAGGGTCTGATCTTCAGGTTCAAGTTCCTCATGCTTATCACCTTGGCTTGTGCTGCCATGACTGTTATCTTCTTCATCGTTAGTCAGGTGAGTGGATCCTACTTAAGGCTTCTCAAGAGACTATTCCTGTAGCACAGGAGATTTTGCAGAGCTGCTGAGGACAAAAGTAAAGAGACTTTTTGGTTTTTTTTGCTAACCAAGCCTTGTTTGTTTAGACCATTCTAACATGGGACTTTCCATAGACTGGTAACATAGACTGGCTTTGCCCTTCCAGCTCTACCTTGTAGAA--AGTTACTAAAT------AAAACCTGTAGCCATATGGAAGGG---ACATTTCACTT----AAAAGAGTAAAAATT-----TCAATCCCTGTGGCAAAAAAAAGCTTGACAATCATGTGGTTAATTTGGTTTTAGGTCCTTACCTAGCATTAATAAAGGTCTTTTTACAGATTTTTAGCCAATCTGTGTGGTAATTACATTGCTAACTAAATAT-GAACATAACTC---AAGTCTCATTGAGAGAATCTTACCTTTATACTGACTACTTCTAAAACTTAAATTAT-AATGTA-CATTAAAATCTCAGTAATGATGATTATAATTTTTAAATATTGA----TTACTTTGAAAAATTGAAAAAGTCTATCTAAAATCTGA-TTATTATGCACATGTTAGTCATTT
s HiC_scaffold_1 147020533 1829 + 233722169 CCTCAAAACTCCCTGAATACTTGGAGACCACAC-AAGCATGGCCAGTGGCTCTGGGAGGAGCACAAGTGCCTGGGTCCCCC--GCTCGGGTCCACGGTACACCTGCCTCTTCCTTGACTGCATGCTGACAGATGGCCTTCATCATCGTGGCCGGCATCTGCCTGTGCCTCTACTTCCTCTTCCTGTGCTTCATGGTGTTCCAGGTCTTCCGGAACATCAGCGGGAAGCAGTCCAGCTTGCCCGCCATGAGCAGGGTGCGACGGCTGCACTACGAGGTGAG-------------TGGCTCCAGGGCCCTGGCT----GGCTCCAGCCGGGCAG-------------CAGGATTTGGGGTTTGGCCTGGGGG-----------------------------------TGAGGCT------------------TTCAGC---------------------------------AGATTTCGCTTGCCCAGAATGAGCCTCAAGC--------------------------------TGCTTCCCAGA-TCTGATAGCCCATATCCTCCTAAAATAGCCAGGAGGTGATCAGCCAGTGTCCAGCCCTCTGCACGT-TGTTAGATTCCTCTGGGGAGAAGACTCCACACCCACACATTCCTGATTTCTCCAAGGCTCCCTTCCTC-GGTGCCTAAGTGGCTGCCATCCTTAGAGACACCAGCCCGGCCTGATGCTT-CCTGACAGGAGAATCGGCAGAACCCCGG-----TGCTTTCCCAA--TGCACAGAAAA-GCCCGATTCACAAACCTCCAGTCCCG---CTCTGGTAT--------------------------------ACCACAGGGACTTTCTGAGGTTTGCTTGTACCCAGACCTGGAGTGACACGT--GCAAATCCAACCAAACCACTTCCCGTTGACACATGTGcacaattccttttttttgtttgtttgtttgtttgtttgttttttaatcttttttatgggtaccggggatggaacttaCCAcctaccgcctgcttgcaaggcaggtgcttatgccgctgagctaaatccctagccccaacaaTTCCGTTTGTTCACCGGAGCAGAA--TTGTTACTACTGCAGAGTGCTTGGGTTTTGAAACTCAGGGTCCTTGCTGAGA-------AGCCTGGCTAGCTTAGGGGGATTAGCAGCCTC----CATGTTAGGAGCAAGATTGCCCGGACTCCTCCAGCACTCCCTGGGGAGATGAAGGAACCTGGGAAG---------CAGAAGTG---TCAGCC-CCCTCACCTAGGCAGGA--------GAAATGCAGGATTGTTTCACTATCGTTCATAGG-ATTTGCATTCAGAGTTCTTTCCAAGGAGCTTTCCTTGGATTTCTATATGAACAAAAGGCCTGG------TGAAAGACT----GAATGCT-TTTCTCTCTGCCTGCACAGGGGCTGATCTTCAGGTTCAAATTCCTCATGCTGATCACTTTGGCCTGTGCTGCGATGACTGTCATCTTCTTCATCGTTAGTCAGGTGAGTGACCCCC-----AGACATCCAGAGAGAAGGTCCC-------CAGAGGTTcttgcacacacacag------aaatcaCAGAGGGCTTATGCTCCAGGCAGCTGGTCAACCTTTGT-----------------ACA-------------------------------------ACGCTTTCAGGGCAGCCAGGTGGTAGCAGTTGCTAGATAAATTAAAACCCCACAGCCAGATTGAGGAGAACATGTTTCATTTCTTGAAGAGAATAAACTTTGTGAGCCAAGCCCCACAGCGCTACA----CTAACAAGCAAG-AATTGATTTG--CTTGGATCCTTATCCAGCGTTAATGTAGACCCTTTTACCGCCCATCACCCACGCTTTGGAGTAATTATATTGCCACTTAAACACAGTGTGCAATTCCAAAAGTCCCACTGGGGCA-----GCCTTTCCATTGGTCGTTTCCCAAGCTCAAAATGTCAGTGGAGCTTGGAAATCTCAGGAGTGATAATAGTGATTGAAAAATATTGGTAACTTGCTTTGGAACATGG--GAAGTACTGCTGAAATCTAACCTGTTAAGCATagatcattctttt

a score=31011
s chr3           159917324 1355 + 160039680 GCTGAATTTAATCTTGTACATGTTTAACTGTTGCACATTTTAAAGTGATGGAAACTATCTTACAACAGAATTTGCAGCTTTTCTTTGGAGAGAAAGATTAATTTACCATTGCTCCAGTATTGGGCTCTAGCCTGCTTTTATATTAGCTGCAATAGTCTGGT--GGGTGGATTTCAACTCTAAGGGGATATGATGTCTTTGAATTCCATTAGTACCACACATTCCTCCTGCTGCTTTTTCTTTTTTTTCCTCTCTTAAAAAGGTTTATTTATAGATAGCTAAAACATTTTCCTGCATAACTGTGTCCCGGGTAC--------TGTTAATATAGTCATCAGAGGATTTATTTTCTAA-TATCATTTTGGAATGTCAGAGCAATAAGCTTACTTGAAAGAAAATCTATTGGGTAACTTTTT-AAAATGGATCTCAGCCTTAGGTAAAAGGCGTGTTTTTAAAACTCCTTGTTATACTT-------GTTGGGAGAGCTTCCATTTACACCTCATGAAATATATGTGGGGAAT---------------CTTGCCAGGATATTGAAACTCTGAGGCCAGGAATGAAAGGCATATAGGAAACTGTTGGAATG---TAAGCTTA-GGCTTTGTAGCTTGGG-CTGGGATTTGGTCTTT-AATGCCTGCTATTTTAATGGTCTGAGTCACAGCAATGAAGAAATGCTATTGTAGAGTCTAGTCTTTCAGCCCCTTTCTTTCTAGAAGAG--AGAAGTGTTCAGTTTAGAAGTGGTGTTGGTAAAGAGCAGAAGTACAGTGCAAGAGAGATGTTCAG--AGACCTTCACTGAAGGAGCTCCCAGAGGACTGATATGTAG------ATCAAGATATACATGATAAATACCCAGAGAGC-CTGTTCCCAAGTTCTTTTTTG--------GCTTACACAAATATAAGCAAACGTTTCCTGTAAGATGTGTTGGGAGTTTGGAAATGTTTTCAATA----GATTGCTGGTTGTCAAAACTACTGGGTATAAAGAGATTTGACC-TCACTTGGCTG-CAGGATATATATTAGC--TCCTATACAGAAGAGAGTTATTGGAATGT-AAAATCAGGAAAA----------AAAAAATGAGTGTATAA-AGGGTAACATGGTTGGTATTGTAAA---------------------TACTTGAGTTTTCTCTTTGAAAGTTAAAATAGGAAATAGCTACCTTTATAA--CTTACTATTGTATGAACTTGAATCTACAAGGCCTGCTCTTTTGAGGTTACTCATTTTGGTTTGTGTTAGTGGGATTGTGCTCAGAGTTCAGCATCTCTAAAGCACGAGTAATTTAGAAAACAAAGTGGAAAATACAAG---CCAGTTTCTGAACTCTGGGATTACAATATCTGCATAATATATTTATGTAGTTTACCTCTCTGCCCAC--CAGGAAATAA-GCATTTACAGAT
s HiC_scaffold_1 147024113 1331 + 233722169 GCAGAGTTTAACTTTGCGCATCTTTCA----TGCACGTTTGAAAGCAATGGAAAC-------CAGCAGAGCTGGTGGCTTTCCCTTAGAGAAAAAGATTAACAC-CCACTGCCCCA--------------CACCTCCTTATGTCTGCAGCCATAGTTGGGCTGGAGTGGATTT------------------------------TCCATTAGCTCCTCACATTCCTCCTGCTGGGTTTTTTTC----------------AAGGTGTATTTATAGACATCTAAGACATTTTCCAGCAAAAC---GTTCAGTGCCCCCATCCTGTGTTAATATAGTCATCAGaggatttattttctaaatgtcaTTTCAGAATATCAGAGCAGTGAGCTCACCTGAAAGAAAACCTATTGGGTAGCTTTTTTGAGATGGATCCCAGCCTTAGGTAAAAGGAATGTTTTAAAGCCTGC--ATTGTACTCCGGGCACGCTGGGATC-TTGGCATGTAAGCCCCTTGAAATGTGgttggggggtggggtggagggggGTCTTGCTGGGATGTCAAGGCTCTGAGACCGGGAATGAAAAACCCA--GGGAAGTGGTGGAATGCGGTGACCTTGCGGCTTTGTGGCTGGGGACTGAGGTGCAGGCTTTCAATGCCTGCCACTTTAATGGCCTCAGTCATAGCAACCAAGGGCTGGCACATCAGCGCCTGGTCCCTCA--CCCCTTCCTTCTGGAAGAGAAAGAGGCGTTCAG--TAGAGGTGGTGGCCGCAGGGAACACAAATGCAGTATCTGGGCCACACTGTGTCTGACCTTCAAGGAGGGGACCCCCAGGTGTCTGACATTTGACGCCCCATGAGCCTATCACTGCTCTCTAGCACAAGATCACTTTACTCCAGGACTTCAGTGGCCGGACTGCTGGCACA---------GAGCGTTCCCAGC---------------TCTGGAAACCTCGTCGCCAGGCGGAATGCCCGTTGTCAAGACTACTGGGTGCGAAGGGATTTGACCTTTGCTTGGCTGCCGGGGTATAATTGGGTGGTTTCACACAAAAGTAAATTATTGAAATgtaaaaatcaggaaaaactGGGCACTAAGAAATAAGACTTTGGCAgagcaatttttttgtttgtttgggttttttttttttggatggcgCTACCTGATCTTCACCTCTGAAAGTTAAA--AGGAGAGAACTGTCCCCACTGTCCTAGACATCAGAAAGGCTGGGATCCTC-AGGTCTGATCTGTGGAGCCTGCTAATTGAGGCTCCTATCGGTAGGAATGTGCCCCCAGCTCGGGCCATCTCAGGCATGGT-------GGGAGGGAAGCTGGGAACACAATCCCCCAGT------------GGAGGCCGAGATCTGTGTGGTTCGTTTGtgcagccca--gccctgcccactGCAGGAAGCAAGgcatttacagat

a score=17833
s chr3           159922532 1275 + 160039680 GTATAACCCAGACTCATTTAGCTGCCAGAAAAGCATGTACCCAGCAATTCCTTTCATCTACATTTAAAATTTCCTATAGCAAACAGAAGTGTTCAAATTCATTTCAGTGATCCTACTGCTTGTACAAATTATTAGTCACTCAACTCAACAGCTCTG-TAACAATTCTTAGTATAAATCATATATTTTCAGAACATTCTGAAAACAATTGCTAAGTCATTTTCTCAAACAAAAGCAATTTCTGAACATCTCTTGCAAAAACGGAAAGTATGTGGAAGTTTCTTAATTACTTTTTTGAGTAGTGTAGCTAGAATGACATTTCATAAATAAATGTGATATATTGTTACTGTCC-----CCCACATAATTTCTAGAAAG---TTTATATATATATTCAATTCTAATCTAGGACCCTGAAAGTTTTTA----------AGGGAACAGAATACCAGAGACTTCATTGTTTCTTCATTGAGTAAATGTGCATGATTTGTTTACTGCATACACATAGAACATC---AAGCACCAAAGATGTTGCAGCTTCAGCA-------AGCAAACTATAGATGATTT-TGTTT-CAGGGAACTTTTGTTCAGATATGAAGAAAGTAAAGAAGAAATTATAGCTGTGGATGGAGTCAAATTCTCTAACTAAAGAGTATTTAGACTTCAGTTTCTAGGAAAAGATATTCTCAAAGGTATTGTAATATATAGCCAAAATTAGAACCACTGTGGTTTTGCATCTGACACTAGTAAATCCTCAGGAGACCTTAATTTACATGGATTTTATTTACATTAAAATGTGGAGTCTTTTAGGGCCCTTAACATTTCCATTTAGAGACTTGGCTTTCATGTTGATTGATTTCTATATTGGTATTA--TGCTTTTCTGTTTCACTTTAATACCCCCTTTTTTTTTAATCTATAGGTGTCAGAAGGCCATTGGAAATGGGGTGGTGTCACAGTTCAAGTGAGCAGTGCTTTCTTCACTGGAATCTATGGGATGTGGAACCTGTATGTCTTTGCTTTGATGTTCTTGTATGCACCATCCCATAAGAACTATGGGGAAGACCAGTCTAATGGTGAGTCTCTATCTTTTCATTGCAAATTTTTTCAGTATGTAGTAGACTTGTCTGCAAGATTTAGACAGCTAAAACCCTGTGTTCATCAGTTAAAGCTTCTTCCAGATGTCTTTCTAATACTACCAATGTAACTGG-----AGGAATTCAGGAACCATAAAACA--------------AAAAATCAGCACAAACTAGATAGCTCTTTAA-TATTCATTTTTTAATCTGTAAAATATATTGAAAATGTT
s HiC_scaffold_1 147027389 1117 + 233722169 GTGTAACTCAGCCTCCATAGGCCACCACAGAAAGACGTGTCCAGGACCTGCTTTCATTCCCACTTCAAATGTCCCACAACCAGCAGCAGTGGTCAACGTCATTCTGGTAATCTCAGAGCTGGCACAAATTATTAGTCATTCAGCTCCACGGCTGTGCTTACAGTTCTCAGCGCCATCCACGA--CCTCGGGCAGCCCTTAAAACAGTGACTGAGCCTCCCGGGCAGACAGG-GCAGCTCCACACCGTCTCTT-CAGAATTATAAAGCGTGCAAATGCTTCATGATTACTTGGTC---------------ATTGACCCCCCTCACGTGA----GATTTATCGTT--TGCCATGGGGCCCACACAATTTCTGGAAAGAGTTTTACCTCACTCTCCA---------TGCAACCCtgcaagtttttattttatgcttaggaaactgaggtccagaggcTTCCTT-TTGCTTGTTTTAGGAAG--------------------------CAGAGCAAATCTGAAGGCACCCGGAATGTGGTGGGCTTGGAAGAAGGACAGACAGCCAGAGCTGCCCTCTGTCTGCGGGGAATTACTG--CATCTGAGAGGCCAGCAGAGGGGA-------GCTGTG-ATGG-----------------------------------------TGGGGAGAG---------------TGGTGATTTAGGG-----------------GTGACCATGCA-------CTGGGGTCTCCTCCACCGCCCTCTGCCTGTACAACTTCGCTTCAGACAAGGACAGGG----TTGATGCGGCCTTGGCTTTGGACCCGCAGGGCCTTGCGTCCCTGGGGATTGGGCTCTGTGCTTGCAGCACCTTCCTGCCTGGTCCCTGTTAGCAGTGCTGTTCTTTCTG---TGCAGGTGACCGAGGGCCACTGGAAATGGGGCGGTGTCACGGTGGAGGTGAGTAGCGCCTTCTTTACCGGCATCTACGGGATGTGGAACCTGTATGTGTTCGCACTGATGTTCCTGTACGCGCCGTCCCACAAGAGCTACGGGGAGGACCAGTCCCATGGTGAGTCTCCACCTCTGCACCG-----------------------------CTGCCAGGGTGAG--------AGCTCCGGGCTCATGAGTGAGACACTCCCCCAGGCCCCTC-------------ATg---ctgggggacaggaagtgagCACCCGCAGGATGCTGGGGGGGGCAGTAAGACCAAGCACACACCAGGCAGCTCTCAAAGTCTTCATGTTTTAATCTCTAAAATACATTTAGGATGtt

a score=28877
s chr3           159933997 1161 + 160039680 TTGGATAATAAGTATTTATAATAGCATTAAGTACAAGGTAAGCTTTCATTAAATGTTAATAA-TACTATGAATGATATCAGCAATTATTTAACTCATATATCATGAATGACCTGTTTTTGTGCCAAAAGTGatttttaaaatatatatatataaCAAATTCTAAGCAAAAATGTTGAAAGAG---------CCTA--TCAGAG-------------TAGAATGTGAAATGCTTCTCCTTCATCTTTGAACAAGTATAACACTAAACACCTTGTTTCAGGTGACCTGGGTGTCCACAGCGGGGAAGAACTGCAGCTTACTACCACTATAACCCATGTAGATGGACCAACTGAGATCTACAAGTTGACCCGTAAAGAAGCACAGGAATAGGAGGCTATGGTATGGCACTGAGCTGGAATTGTCTCTCTATCCAGCCTCTTCCCCTGGAGTAGAGATCCTACTATACAGAGCTCAGTGAAAAGTGGATACCTAGTGCTTCTTAGGTATAGTTTCTTAAAACAACAGATGGACATTTGTCAGATGACCTCCAATGGTGGCTGTTGCAAAACTTCTGCCACTACTATATAGCACA-------TGTTAACAAAAACTGATATGACACATTTCCTGTGATCATTGTTAATTAGTGACA-----TAGCAGCATCTGTAGCAGGTGGGTTAGTAACCCTCACATAGAGGGGTATACTCCTTGGGATGGTTTGGGCCAATAGGGGCTATATTGAGTAGTTTGTGACTTTTTT-----CTGCTTTTGATTCTGGGATATGTTTAAACATTCTTTGCAGTCCAACATTTGCTGATGTCATAGTCTTTTTACTCTCCTCCATGGGCACTTTTTT---CTATTTATATCACCAAGTAGCCAAATGAGT---TATTTAAGTTGTCAGTACAAATATGTCA--ACTTTTTAAAAAATGGATTACTATAAAATAACCAAACTTCATGAGAAATTTTATCTTACCAGAGGCATTTCAGCTTTGGAACCAAATCTGTGTATTTGATACTAATCTGTCTGTTTGTTTGTGGATTT-TGAGAAATATTTGCTTAACTACCCAAATAGGATTTCTGGTATTAAATGGCCTTTGGGTCCTAAAAGCTTTTTTTAACTTCTTGCTTAAAATGTGTTTTCTTTTGATAAGATTCTTCAAACAATCTCCAAAAGTGTAAATCTAATCATGTGAATAAA
s HiC_scaffold_1 147036121 1111 + 233722169 tCGGATAA--AGCGTTTAGAGTAGGGTCAGGCACCAGGCAAGCACCCACCAAGTGTTAGCAGCTCCCACACACGGCCTCAGCAGTGCGCCAACACCTACGTCGTT--TGCTCTTCTCTGGACCCCAGGATGATATTTTAAATCCT--------GCCAATCTCAAGTGCAAAGGTTGGGGGAGGCCCAGGGGCCCAGCTCAGGGACAGGAGCCAACACAAAGCCTGTGTCCCCCCCCCGCCCTCCTTCACCCCAC-TAACACCGCCCTCCT-GTTTCAGGCGACCTGGGTGTCCACAGCGGGGAGGAGCTGCAGCTGACCACCACCATCACCCATGCGGATGGGCCCACCGAGATCTACAAGCTGACCCGCAAGGAGGCCCAGGAGTAG-----CATAGGGGGGCTGCCCGCCGgg-------ccctgcccagcccctcc----------------------------------------------------tgcctCCCAGCCAGGCCTTCTTGGACCTGCGGTGCGGACCCTGTCAGGCCGCCCCCTG-AGCAGCT-TCAGGAGGGTCCGGCAGCCCCTCACCAGGGCAATGGGTCTGGTAATAAACTCCAACA-GACTCACGCTCCGTGGGCACCGTTACCTGGCAACGACGATCACCAGGACTGGGAGCCGGCTGG-----GGGCCTCACGT-GTGGGGTGTTCTTCCTGGGGTGCTTGGGCCGGATGGGGTCTGTATCGAGTGGATGGTGActctttttattcctgttttagaTTCGGGGTAGATTTTTAACATTCTTTGCAGCCCAGGGTGTGCTGGTATCTTGG-CCCACTGTCCTGCTCTGCAGACACTTCTTTTCCCTATTTAT---ACCCAGTAGCCTGCTGAGTTAATATTTAAGTTCTCCATAGATATCTGTCCCTACTTTT------ATGGCTTCATACAAACTAATTGAATTTCATGAGAAGGTCTATTCGACCAGAGGCATTTTCGCTTGGAAACCAAGTCTGTGTCTCTAGCACTAA-CCGACTG-TCGgatgtgactttaaaaaaaatgtttgcttAACCACCC-AGTAGGATTTATGGTATTAAATGGCCTTTGGGTCTGAAAAGC-TTTTTTAACCTCTTGcctaaaatgtgttttcttttgataagATGCTTCAAACACTCTCCAAAAGTAGAGATTCAGTCGTTTTAATAAA

a score=5418
s chr3             3348432 260 + 160039680 CTCAAGAAATGAGGAGCACGGGTTAAGAAAAAAGATCTTAAGAATTTTTTTTTCTTTTTCTTTTTTCCTTTGGTTGTGGAAGTGTGGCCTTGGTTTCCCTTAGAAGGAAAAATAGATGAGAAGAGATGGACTAGAGTGGGTGACTGTATAAAAGATTTTTATAGGACTTTTGGCCCAGAAAAGATTCCTGTATAAGCCTTTTCTTATTGAAATCTTGTTAATGAAACTCTGAAAGTTTGTAAACGTTGCTCAGATATTCA
s HiC_scaffold_1 143094148 238 - 233722169 ctcaagattAGAGGGATCAAGGTTAAGACTAAAGACTTCctacagtactttcagtttatacattc---------------agtgtgtccatggttccctctAGAGGGCACCATCAATCA-AATAGATGGAAAAGAGTGGGAGAAGCTCTCAAAGACTACTATGGGGTTTTTGGCCCAGAAAAGGTTCCAGTAACTACTTTTTgatattggactttaatctctgagctgctgaca------caATGTCACACAGATCCCCA

a score=5408
s chr3            3348432 260 + 160039680 CTCAAGAAATGAGGAGCACGGGTTAAGAAAAAAGATCTTAAGAATTTTTTTTTCTTTTTCTTTTTTCCTTTGGTTGTGGAAGTGTGGCCTTGGTTTCCCTTAGAAGGAAAAATAGATGAGAAGAGATGGACTAGAGTGGGTGACTGTATAAAAGATTTTTATAGGACTTTTGGCCCAGAAAAGATTCCTGTATAAGCCTTTTCTTATTGAAATCTTGTTAATGAAACTCTGAAAGTTTGTAAACGTTGCTCAGATATTCA
s HiC_scaffold_1 38335498 239 - 233722169 ctcaagattAGAGGGATCAAGGTTAAGACTAAAGACTTGctacagtactttcagtttatacattc---------------agtgcgTCCATGGTTCACTCTAGAGGGCACCATTGATTCAAATAGGTGGAAAAGAGTGGGAGATGCTCTCAAAGACTACTATGGGGTTTTTGGCCTGGAAAAGGTTCcggtaactgctttttcatattggactttaatctctgagctgctgaca------caACATCACGCAGATCCCCA

a score=4610
s chr3             3348494 168 + 160039680 TTTTCCTTTGGTTGTGGAAGTGTGGCCTTGGTTTCCCTTAGAAGGAAAAATAGATGAGAAGAGATGGACTAGAGTGGGTGACTGTATAAAAGATTTTTATAGGACTTTTGGCCCAGAAAAGATTCCTGTATAAGCCTTTTCTTATTGAAATCTTGTTAATGAAACTCT
s HiC_scaffold_1 144601863 168 - 233722169 ttttgattttataaaagaagTTTGTCTTTGGTTTCCTATTGAAGGGACTATTGATTCCAAAATGTGGAAAAGGGTTGGTTTCGCACTTAGAGATTACTATGACATCTTTGGACCCAAAAAGGTCCCTGTAATTGCCTTTTCTTCCTGGGGCTTAATAGATGAAATTTT

a score=4621
s chr3            3638117 113 + 160039680 TGTGCCATCTGTGGTGACAGAGCAACAGGAAAGCACTATGGGGCATCCAGTTGTGATGGCTGCAAAGGCTTTTTCAGGCGCAGCATTCGGAAGAGTCATGTTTATTCCTGCAG
s HiC_scaffold_1 49484180 113 - 233722169 TGCCTCATTTGTGGGGACCGTGCCACAGGCTTGCACTATGGAATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAACGGGTATATCGCTGCAG

a score=3754
s chr3            3638143 85 + 160039680 AGGAAAGCACTATGGGGCATCCAGTTGTGATGGCTGCAAAGGCTTTTTCAGGCGCAGCATTCGGAAGAGTCATGTTTATTCCTGC
s HiC_scaffold_1 39889490 85 - 233722169 AGGCAAGCACTATGGCGTGTACAGCTGCGAGGGCTGCAAGGGCTTCTTCAAGCGGACTGTGCGCAAGGACCTGACCTACACCTGC

a score=4424
s chr3            3644591 102 + 160039680 CATCAGTGACGTTTGTGAGTCCATGAAACAACAGCTCTTAGTCTTGGTGGAATGGGCCAAATACATCCCTGCCTTCTGTGAACTGCCCTTGGATGACCAGGT
s HiC_scaffold_1 39897661 102 - 233722169 CGTCACCAACATCTGCCAGGCCGCAGACAAACAGCTCTTCACGCTGGTGGAGTGGGCCAAGAGGGTCCCTCACTTCTCCGAGCTGCCGCTGGATGACCAGGT

a score=18293
s chr3             3791949 698 + 160039680 TCAGAGGAAACAGATGGTCATGGATGTCCTCCATCCTTGGAAGGCAAAAGTCCCAAAGACAGAAATTTGGGAAAAGCTGGCCAAAATGTACAAAACCACA--------------------------------------------------------------------------------------------------------CCAGATGTCATCTTTGTATTTGGATTCAGATCCCACTTCGGTGGTGGCGAGACCACTGGCTTTGACATGATCTATGATTCTTTAGATTATGCAAAGAAGAATGAGCCTAAACACAGACATGGAAGCCATGGCCTTTATGAGAAGAAAAAGACCTCCCGAAAACAGCGAAAGGAACGCAAGAACAGAATGAAGAAGGTCAGGGG--CACGAAGGCCAATGTTGGTGCTGGCAAAAAGCCAAAGGAGTAGA---TCTGCGGTGACTTGATGTTTTCCTGTGA-TGTGCAGATTTCT---GAGAGGACAAATAAGCTAAAAAGTGTCTACAAAAGGAAAAAAAAAAAAAGAATCAAATGGAAGAAGACGTTTATCACCGTTTTCTGGCAGAAAGATTCTTGTTAGAAAATGTAagccgggcagtggtggggcacgcctttaatcccagcacttgggaggcagaggcagctggatttct--gagttccaggccagcctggtctgcagagtgagctccaggacagccagggctacacacagagaaaccctgtctcagaaaagccaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaga----------------aagaaaagaaaagaaaa
s HiC_scaffold_1 133510821 719 - 233722169 ttaaaggaaataaatggtCATTATTGTCTTTCACTCTGGGAAAGCAACAATACCTAAGA----AATTCAGGAAAAccttga-aaaatgtaaaagaccacAGCAGATGtcacttttggttttgttttgttttgttggactggggactgaactcacaaccatgcacttgcaaggcaggtgcttaagtcaGTGAGCTAAATTCTGGGCCAGATGTCATTTTTGTATTTGGATTCAGAATCCATTTTGGTGGTGGCAGGAA-ATTGGCTTTGGCAGTATTTATGGTTTCTTGggttatacaaagaaaaatgaacccAAACATAAATTTCTAAGATATAGCCTATATAAGAAGAAATAGACCTCAAGAAAGCAGCAAAAGGAATGTAGGAACAGAGTGAAGTAAGTCAGGGGTCTGCAAAGGCCAATGCTGGTACAGCCAAAAAGCCAAAAGAGTAAAGATTCTGCAATATCT-----GTCCGCAGTGATTATGCAAGTTTTTCACGAGAgaataaataaactaaataaagacctaaaacacaaaacaaaa--------------------------catca-----------------------------------tatgccaggta-tggtggtgcatgcctgtaatttcagca--tgggagaccaaggcaggagaatcaccaggagcttaagaccagcctgcactacatagtgag-------------------------------agcctatatgaaaa----caaaacaaagtaacaataataaaaaaaaacaagataactATATTCTtgttaagaaatgaaaagaaaa

a score=25212
s chr3             4776523 662 + 160039680 AAGTGAAGATTTTTACTGTGTTTCTGTAGCAAAAGAATTAGAATGCATGGCTTCAGCTCATTATGGTACACAACACAGCTCT-----AAGTCAAGAGGCTGACAGATGAGCTTTGCCTATTTGAGTCTTAAGGGCCTTGGAGTCAGGAGGATGGATGACTGCTTAACAAGAACAACATCACATTTTTGTAAAAGACAAAAAG-TCTAGCTTTGTGCCAATTGACTGTGATGCTTGCCTAAACTCAATATTCAGATCATGACTATTTAATTTACCTGTCAATGATTTACTCCTGATTTACATAACACCTGCTTGGCATCTCCAT----ACAGTGTAGTGCAGCTGTTTCATTTTCAATGTGCTATAGAATGAGTTTTCTGAGCTGCTAAGAATCAGTCCCCTGTCAAATCCCATTTTTATTTCATTAAAACACTCATGCTTTAATTGCTGTGGCTAGAAATC--ACAGAGTGACATGTGAAATGCAAACCATAAATATTCCAAT-ATCTTGGATCCTC----TCC------TTAAGAGAGGAGATCCCAGTGTTAAACCTGCATATCAAACAAAAGTGAGAAAGAAAGGAAGATAATTACAAAGCAGATATCCTGGTTATAGAGAAGGCTCCAAATACAAGTTTATATAATGAG-------TGTCACTTAACAGATTATAAAGCttttttttt
s HiC_scaffold_1 100940292 677 - 233722169 aagtaAAAATAGCTAAGACACTCTGGTAACAAAGTAATCAAAATACATGTGCTCAGCTTATTATGGTACCTAATGTGGCTCTGACTAAAGTCAAAAGGCT-ATAGATGAGCTTTGTCTGTTTGAGTCATAAGGGCCATGAAGTCACTTAGATGGATGACTTCTCAACGAGAGCAGCATAATATTTTTgtacaagacaaaaaaatctagCTTGGCACCAATAGACTGTGATCCTAGCCTACACTCAATATTCATATCATGACTATTTAATTTATCTGTCAATGACTTGCTCCTGATTTGCATTACACCTACTTGGCATCTTTCTACCGACAGTAGAGAatagcaatttt-ttttcaatGCAATGTAGAAGGATCATTCTGAGCATGTGAGAAACATT---TTTTCTAATGC--TGTTTATTTTATCAAAACACAAAT--TATAATTGCAGTTGTTAGAAATTAGATATAATGGCATGTGAACTGAAATCCATAAATATTCTAATAATCTTGCAGTTTCAAAGTGCTTTAAATTAAGATATGGAATTCAAATGCTAAA-----ACATCAACTAAAATGGAGTAAGAAA-GAAGATTATTGCAAAACAGGTCTAATACAAATAAGGAAGAATCAAGTTTTAAACTTACATGTAGAACACAATTTATAATCTAGTAGAATGCAAGGCCATATTCTT

a score=13623
s chr3            5473296 435 + 160039680 TTTTTTTTTTTTCTGTGCAAATTCACCATCTCAAAGTGGCAGGAGGAATTATGCATAAGCTAATACAGCCAAGAGCTCTGTAAATTTATCAGCGGGTCTTGGATGCTTTATTCAC-TGGATATATTCAATGACTGGAGATTCTACATCTAAACCCACAAGTTCACCATT------------TTTATGCTTGTGAAGCAAAA-CTCAGTACTCTTGTTTTGGTGAACAATGTTCTGTCTAGCTCCATTGTTTGTACTGGATTCGCCTACCAACTATACCATTATACTGTCTGAATAGCACACATTGTTTATTTAAG---------TTCAGATACTTGATGGCTTCTTTAATATGAAGATCCTTGATAGCCTGGGCAATCTCACAGGTGATTTT-AAGTG-ACATGAAGAACTGAACCTCTTGATTTTCTTGG-TTTTATAGTGTTTC-TGGATCAAAAGAATA
s HiC_scaffold_1 56902010 440 - 233722169 TTGTTCCTTTTTCAATAAGGATT----ATCTCCATGTGGCAGGGGAACTCAGGTATTCATTAGTTAGATCACGAGCTC------------AGCGCATCTTGGGTGCTTTGTTTACCTGGATTCGTTCAATGACTAGAG--TCTACTTCTAAACTCTTAAGTTCATCATTAGTCTTTGCATTTCTAAGCTCATGCAGCAAAAATTCAGCACTCTT--TTGGGGTCTCAATCCTGTGTCTAGCCC--TCATTTGGCTTAAGCACACCTACCAAGTCCACCACTAAAATGGTGGAATGACACACACTGCTTCTTTCAAGAGTCACCCTTCAGATACTTGGTGGCCTTTTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCACAGAGATTCTTAAAGTGAACACACAGATTTGAGTCTCTTGATTTGCATGGTTTTTGTAAGGTTTTATGGGTCAAGAGAGTA

a score=16002
s chr3             6049593 507 + 160039680 ATTACCTAAAGTTAAAAAATACCAAATGCATGACACCACAGTTATGTTGTTCATGGGCTGAT-TAGACCTGTTACCATCGAGATGTCTTATTTAAGGGAAACATATGGGCGATAACGCATTTAA-----TGGCCCTGAAGTAAGAACCAGATGTCTGATAAAGTTTCATG-GTAGCTACCCCCAATTTGAATGGGCCTAAAGTGAGAAGAGGG-TTATTGGTGGGCGGGTTGTTGGTTTCATGGAGGATGGTAGATTAATAGACAAAAT-GGGGAAGGGGAGAGTCATATGGAAGAGAAAATTTTAT--GACTTAATAGTGTATGTCTAATAACACAGA-TATGTCTATAAAGCATTAATTAAAATGTATGGGTT---------AATATTCATGTTA------GTATTGTGTTATGTTGATTAT---TGATTTATGTTAGATGTCATTGAGGTTTTTTACTTGCTT-ATATGCTAGGGGTAAATAAATTAATGTATGATATACA--------TTAATGTTCTATTGTACTAGATAATTTTATGTAC
s HiC_scaffold_1 163604883 522 - 233722169 ATCCCCTAAAATTAAAAGATACCAAATGCATGAAATCACAGTTATGTTGATCATGGGCCAGTCTAGTCATTATTCCATCGAGATGTCTTATTTAAGGGGAACAAATGAGTGGT------TTTAAGGGTGTGGCCCTGAAGTAAGAACCAGATGTCTTTTCAAG-ATCATGTTTAGAAACCCTCACATGTTATGGGCCCAGGGAGAGCAGAGGGATCCCTGTTTAGCGAGTTGCTGGTTTCGCGGAGGATGGTAGATTATGAGGTTGATTAGGGGAAGGGGATAGTCATGTTGGTGAGGA---TTGATTCGACTTAATGGTGCATGTCTAATGATGGATAGGATGTCT----TATGTCAGATAGAAT-CATGGTCTTTGGTAAAGAATGGTCATATTGTGGTGCTTTTTGTGTGGAATTAGTTGTGAATGGTTTATGT---ACGTGTGTAGGGTTATGTACTTGCTTGATATCCGTGGGGATAATAATTTAATGTTGATTATACATATAATGGTTTATGTCCTATTATAc------atgttatgtac

a score=23974
s chr3            6610720 739 + 160039680 TTTTCCAAAAACAAGTATGAAGTAATTACACAGGGAAAAACATAATGGTTCACAAGGAATGAGATAAGTCCTGGTTCTTCATTGGTAGCCCCAAACCACCAGTCCTTCAGTGGCAAACCCAGGAGCCCA-----------CATGGAAGGTCTGAAGGCAGAGGGTGGGGGTGGGGCCTACTTGGCTATAGTAAGGG-TGTCCAGACAGAGACAGCACATTTGTATGCTACCCATAGCCAAGGCACAGCTCCTCCAGGCTTCTATCACATTTACAAATACATACATAAATACATTACATACA--ATAG----TGGGTCTGGGAGGCAGCCTTCCCACAGAGGCTTAGATGACAGTTATGTCTCAGGATTCCAGAAAGGTCATGGGGCTCCCAGAAAGGTGCTCCATGTGTTC--TCTTCTGCCCAGAGTACACCCTGGCTAAGAGCCCACACTCTCCCTTTCAGAGTCTGGTTTATTCAGGACGAAGAGTTATCCTGTAGGTAGGTTTGGAGGCTTGAGACTTGGGTTGCAGGAGGCTGGGTTGGCTGTGCTGACCAGAGCCAATCTGGGCA-------------------------------------------------------------------------------------TCCTGCAGTAGGTGGTGGTACAGCAGCTTGGAGTGGGGCTGCTGGCAGGCTGTCATGATGTGCAGGAACAGGGCAGGTGCGTAGCTAGGGGCCGCTCCAGGGGCCAGGGGCTCAGCAGAGCCCAAGGACGAGGGCAGGCTGAAACGTGGAGGAGTTCCTGCATGGAACCCCTGCTTCTCAAATGTCTG
s HiC_scaffold_1 54412586 735 - 233722169 TTTCTCAAAAACAGATATAAAATAGTTACAAAGGAAAGAGGACAA------------------ATCGGTTGGGAGTCTTCATTGGTACCT-------------------------GACCCCGAAGCCCAAACTGCCTTGCCAAGGGAGATCCAAGGCCAAAGGGCACGGG-----CTTATTTGGCTACAGTGAGAGAGGTCTGGGTGGGGAGAGCAGACTTG------------------------GCTC------------ATCTCATTTACAG-TACATACATAAATACACTACATACACAGCAGGCTCCGGGTCCCAGAAGGAGGCTCCCCACAGAG------------------CCTCAGGATCTAGGAACAGCCCTAGG-CTCCCAGAAACGCACTCCCCGTGCTCGCTCTCCTGCCCAAGGTGAGCCCTG-CTCAGAGCCCAC-CCCTCGCTCT-GCAGTCTAGTTTGTCCAGTATGGAGAGTTGCC--GTAGGTGGGTTTGGAGGCTTGAGCCTTGGGCTGTAGGGAGCTGGGCTGGCTGCGCTGTCCTGCGCCGCTCTGAGAAGGAAGGTAAAAAAGCTGTCAGGGCAGGAGGAAACCCACGCCCGGGGGCAGGCCGGGTCACCGCGTCCACTGAACTCACTGGAGTGTCCTGTGGGAGGTGGTGGTGCAGCAGCTGTGAATGGGGCTGCTGGTGGGCTGGCAGGATGTGCAGGAAAGGTGCAGGTGCGTAGCCAGGGGCTGCTCCAGGGGCTAAGGGGCCAGCAGAGCCCAGGGCTGAGGGCAGGCTGAAAGGTGGTGGAGTCCCTGCAGGAAATCCCTGCTTGTCAAAAGCCTG

a score=5603
s chr3            6611505 90 + 160039680 CAGGCTCAAAACCAGTCGACTTCTTTGGTGCCCTGAAATGATCCACCATAGCCACCCTTGTTGTAGTCTCCTGCCGCTGTCCCCTGGgtc
s HiC_scaffold_1 54413605 89 - 233722169 CAGGCCCAGAGCCAGCAGACTTGCTTGGTGCC-TGTGATGATCCAGCATAGCCACCCTTCGTGTAGTCACCCGCTGCTGTCCCCTGGGTC

a score=4378
s chr3            6616648 89 + 160039680 ACAATTAA--GTCAATTTAT----GCAGTTGTCTTAGACATCTGCAATGGTGACTTCAACCTCAACTCCCAGCTCAATACTGATGGAAGTAAGTT
s HiC_scaffold_1 37918128 95 - 233722169 acaattgattatcattttattaaaacagtTGCTATAGGAATCTGCAATGGTGATTTTAACCTCTACTGTTGCCTCAGTACTGATGGAAGTAATTT

a score=5121
s chr3             6616648 86 + 160039680 ACAATTAA--GTCAATTTAT----GCAGTTGTCTTAGACATCTGCAATGGTGACTTCAACCTCAACTCCCAGCTCAATACTGATGGAAGTAA
s HiC_scaffold_1 170557129 92 - 233722169 acaattgaTTATCGATTTATTAAAATAGTTGCCTTAGGCATCTGTGATGGTGACTCCAACCTCCACTCCTAGCTGCATACTGATGGAAGTAA

a score=23659
s chr3            7192700 513 + 160039680 tcttcttcttcttcttcttcttcttcttcttTTTACTTAAGCAGTCTTTAATGCAAGCTGTCCATGAGCTATCTCTACTCCTGTACCGTCTCGATCGTTTCTTCCTTGTATTTGCCCTTCTCCTTTCCTACTTGTCAGAACTTGGCTTTTCTTTCTAGGATCTTCTTGCGGTCCTC--CCAGCTTTAGCCTTGTGATAACCACCTTGCTGGGGTGGATGCCCACTCGGACAGTTGTGCCATTAGCCTTCTCTCGCTCGAC----------------TTGTTTGATGTAGATGACATATTTTTTCCTGTACACTTGGACCACCTTGCCAATCTGCTGGCCTTTGTAGTGTCCTCGAACAACCTGAACTTCATCATCCTTTTGAGTGGGCATAGACTGAACATTATACTTCTGTCTCAGCTCTTTGGAAAGAGGGGAAGACATGATCTTCCTTAGTATGTGAGAAGGTGCATTGAAATGCCATTTGTGTTTCATGCTTCTGTCAGAAGTCACAAAGGGATTGAACTTCATTTT
s HiC_scaffold_1 30039191 530 - 233722169 TCATTTTTtagtcattgttttttttttttttctcattttagcaGCTTCTAGTCAAAGTTGTATAtgagtttattttttccctgCATCATCACAATTGTTTCTtccttatatttgtttttttcctttcctacttGGCCACATTTAGCTTCTCATTCCAGGATCTTTTATAAGTCTTTGTCTAG-TCTGGCCTGGTGATGATCACCCTGCTGAGGTGAATACCCACATGGACAGTTGTGcccttcccctttctcctctacacccattcattcattcattcattcagtggaGAAGGCGTAGTTTTTCCCTTAAACCTGGATTCCTTTATCAATCTGCTGACCTTTATATTGTCCTCACACAACCTGAACATCATCATACACTTGGATGGACGTAGATGGAATCTTATACTTCTGCCTCAGGTCTTTGGAAGGAGGTGAAGACATAATCTTCCTGCTCATGTGGGAGGCTgcattaaaatgccttttatgaTTCTTGTTTTGGTCCAAAGTTACAAAGGGTTTGAACTCTGTTTT

a score=24097
s chr3             7192723 490 + 160039680 ttcttcttTTTACTTAAGCAGTCTTTAATGCAAGCTGTCCATGAGCTATCTCTACTCCTGTACCGTCTCGATCGTTTCTTCCTTGTATTTGCCCTTCTCCTTTCCTACTTGTCAGAACTTGGCTTTTCTTTCTAGGATCTTCTTGCGGTCCTC--CCAGCTTTAGCCTTGTGATAACCACCTTGCTGGGGTGGATGCCCACTCGGACAGTTGTGCCAT----TAGCCTTCTCTCGCTCGACTTGTTTGATGTAGATGACATATTTTTTCCTGTACACTTGGACCACCTTGCCAATCTGCTGGCCTTTGTAGTGTCCTCGAACAACCTGAACTTCATCATCCTTTTGAGTGGGCATAGACTGAACATTATACTTCTGTCTCAGCTCTTTGGAAAGAGGGGAAGACATGATCTTCCTTAGTATGTGAGAAGGTGCATTGAAATGCCATTTGTGTTTCATGCTTCTGTCAGAAGTCACAAAGGGATTGAACTTCATTTT
s HiC_scaffold_1 102938544 477 - 233722169 tttgttttttcattttagtagttTTTAATTAAAGTCATACATAAAATGACTTTATTCTTGCATCTTCTGAATTGTTTCTTCATTGAAtttgctcttttcctttcctgcttgGTG--ATTTGGCTTTT-GTTCCAGGATCTT-TTGCAGTCTTTGTCCAGTTTTAGCCCGGTGATAACCACCTTGCTGGGGTGAATGCCCACATAGACAGCTGTGCCATGTGGCAGCCTTTTCCTGCTGCACCCTTTCAGTGTTGATGACATATTTCTCCTGGTAACCCGGGACCACTTTGCCAACCTGCTGACCTTTAGAGTATCCTTGCACAACCTGAACCTCATTATCCTTCAGA-TGGGCATAGATcgaactttgtatttttgtttcagctCTTTGGAAAGAGGGGAAGACA--ATCTTCCTGCAAAAGTGGCAAGGTGTATTTG------------GGTTCTTGCTTCAGTCTGAAGTCACAAAAGAATTGAACTTCATTTT

a score=22148
s chr3             7192786 427 + 160039680 CGTCTCGATCGTTTCTTCCTTGTATTTGCCCTTCTCCTTTCCTACTTGTCAGAACTTGGCTTTTCTTTCTAGGATCTTCTTGCGGTCCT------CCCAGCTTTAGCCTTGTGATAACCACCTTGCTGGGGTGGATGCCCACTCGGACAGTTGTGCCATTAGCCTTCTCTCGCTCGACTTGTTTGATGTAGATGACATATTTTTTCCTGTACACTTGGACCACCTTGCCAATCTGCTGGCCTTTGTAGTGTCCTCGAACAACCTGAACTTCATCATCCTTTTGAGTGGGCATAGACTGAACATTATACTTCTGTCTCAGCTCTTTGGAAAGAGGGGAAGACATGATCTTCCTTAGTATGTGAGAAGGTGCATTGAAATGCCATTTGTGTTTCATGCTTCTGTCAGAAGTCACAAAGGGATTGAACTTCATTTT
s HiC_scaffold_1 173897149 421 - 233722169 CATCTTGATTAGCTCCTCCTTATGTTTGCCCTTTCCCTCTCCTGCTTCATGAGGTCTGGCTTTCTATTCCAGGATCCTTTAGGGATCTTTTTATCCCCAGTTTTAGCCTGGTGATAACCACCTTGCTGGGGTGAATTCCCACCTGGACCGTTGTGCCATTTGTCTTTTCCTGCTGTGCCCATTCAATGTAGATGACATATTTCTTCCTGTGAACCTAGACTACTCTACCAATCCGTTGACCTTTATAGTGTTCTCACATAACCTGAGCT------TCTTTTTGGTTGGGCATAGATTTAACATTATATTTCTCTCTCGGCTCTTTGGGAAGCAAGAAAGACATAATCTTCCTGCAAATATGGAAAGGTAC------ATACCTTTTATGGTTCTTGCTTTTGTCCAACGTCACAAAACGATTGAACTTTATTTT

a score=69038
s chr3             7218411 3798 + 160039680 [encoded data, 4191 characters]
s HiC_scaffold_1 111205708 4028 - 233722169 [encoded data, 4191 characters]

a score=76642
s chr3             7218434 3711 + 160039680 tagaggacatcaagaag--gactttaataaatcacttaaagaaatacaggagaacactgctaaagagttac-----aagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttacagaaaaagaggaaaaaacatacaaacaggtgatggaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAA-GCGAGGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTT-------GAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGA-----TTCCA--TAGAGAACATCGGCA-----------CAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATG---AAGATTTTCAACTCAAAGG-----TCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTA--CAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCA---TAGAGGGAGAA-------------------ACCAAAGTATTCCACGACAA---AACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA-ATGACAGAAAAA----AACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAG---------AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAG---CAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAG---ATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATACA--AGAGCAGCCACATTCACTAAAGAAACTTTA--------GTAAAGCTCA-AAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAA-----GTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGT---GAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACC-AAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGG--AATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatt--aactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag--ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactct-aacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagc-aatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaac--tcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaa
s HiC_scaffold_1 185148860 3612 - 233722169 tagaggaaatca-gaagtcaacctttggaactttctgaaataatagcaacagaa----gtaaaaaaatcaATGTGAATGTTCTCTAaggtaaaaaaggaaatgatattaaaaa--taatggaCTTTAAAGCAAACGCAGTTTAGAAATATAGA---------GAAGCTCAGAAAAGCATGAAATCCCAACATAGGGAA---------------AAAACTAGAATGCTATGAAGCA-TATAAACAGAAGTCCTAGG-----------GGATTAAAGACTTTCGTCAGAAATATATGCAACAGACTGAATGAAGGTGAGGATAGAatatcaaatcttgaagacaggattgcagctagtgaccagCAAAAGAAAGGTATCTTAAAAATTGCAAgagatcacacacacaaaaaaaatc-aacccaa--caCTTAcgaaatgaagca------aagaagagcAA-CATAAAATTGTTTGGATTTAGTGAGAATGCCAGAGA----CAGTGCAAAAAGACATTTAAGAAACCGTC----ACAGAAATAATGATAAGAACCTCCAAAAtgtggataaaga-----atttga-cagcCAAATAATTTgggtagaactccaaataaccattactaaaataaatctacatgaaGGCACATAATtattaagattccagaaactcagcacaacaACAGAATAGTAAACATATCTACAGAAA--GGacacatcacctataaaagaagac--aacagaatcacagtagacttcttaCCATAAACCCTCAAATCAAAGAGAGTTTGGCATGAAGTATCTAAggtcccaaaagaaaacaatcttcaactCAGATTGttgtatcccacaaaactatctttcaaaaaaatagagaaataagacacttgaattacaaagaactgaagaaatttatgaccactaaaccaaATTCATATAATG-------------------CTTTGAAGGATATATTATAAAGAGATAATAAATACTGCAAACACatgaaca-----caaagaaaaagaagctcCCTGGTAGGGCCAGCAATTAATCAGAGGATAAAGagagggaaccaacaacagga------------------aaataatgagaaagataaaccagtacatatcagttataaccatcaatgtgaatggtctcaactcaccaatcataagaaacaaactggcagaatggatcaagaagtgagatctaacaatatgctgcattcaagaaatatgttttaactcaaaaatttatagac------taaaagttaaagaatgaaaaacaattctccatgctacaggaacccagaaaagagcaggaatagttattctatttgtagaaagtgtgaactttaaaccaaaactgatcaaaagagataaaaatgt-cattacatacttgttaaagGTAG---CCcccaagaaaaaagataacaatcataagtgGACATGCACCAAACACACTGATGCAcataattacataaaacaaatattaacacacatgtaaaaccaataagcac----------taacacaattgtattgGGGGACCTCAATAATCCATTTTCAGAAATAGATCAatcagagaaa---aatcaataaaggaaTA---TCAGAATTATAGCATGCCTGTGAT----CAAATGGATATGACAGAAGTCTACAAAGTATTCCACCTTAAAACATCATAATATGCATTATTCTCAGCTTTACAttgaatgttctccaaaatagaccacatatttgcctacaaaatatgtttaaataaatgtagagGAATTGAAATTCTTCTATGCATACTGTCAGACCATAGCACAGTGAAATTGGAACTCAGCAACAAAAGAAGCCATAAAAACTGCATAAGCACAGGGAAATTAAGCatc---cttttgaacaaccagtgggtcatagagaaaatcaa-aatgacattaaacagtatatacaattaaacaataataccAATAAAACATACTAGAACATATGGGATGTGATGAATTTAGTCCTATgatggaaatttatagtgatgaactCTTACATCAGGCCAAAAGAATGAACtca----aacaacttaatgttgagcctcaaacttctagaagaacacaaa--aatcaaacccaaaccttatataagagaggaaa---------ttaaaggtaaagaaattaatgcaattgagactcagaaaacaatacaaagaatcagtgcattaaaaagttggttctttgaagtaataaataaaactgataaaccatTAGGAAACCtcataaaaaagaggaaagaagaaatacaaattcaaagatttaggaatgtaaagagaaaaatcacaagggatcctacagaaatccagaagataattAATACCTACTATGAGAACTTATAAT-----AAGAtgaaaatcacagaagaaatgaacaaattcctagaCACAATTGAACtgccaaaaactaaataaatgtta--taaaaactctaaataacctgatatc----aatgaaattaaaaatataattaaaaat-tactaaC---AAAGAGTCCAGGCCCTAACAGAGCCACTGTTGAATTTTAcaacaaatttaaagaagaactaaTGACACTAATGTtgaaactctttaaggaaatgGAAAGGAAGCCTATACTTTCAAAATCACTTCTGAAAGCAAGTAGGACCCTAACTCTAACACCGGAGAagaaccaaaatgaaaaagaatactaCAGACCAAACtctgtaatgaacatagatgcaaaaatcctcaagaatatattagcaaacagaacgcagcaaatcatcaagaggattatacactatgaccctGTAGAATTCATACCAGagattcagggatggttcaacattctTGAACAAATCAATA--------CATGTTAACATAATCAGAGACAGAAATCGCATGAtaatttccatagatgcagaaaaagcatttgat-agtTCCAAAAttgattcatgataaaaaccctacagaaaactggataGTTc---gtttttacctcaatctgataaaaaccatctgtgGCAAACCAGCAGctaacatcttactaaatggtcAGACACTGAAAACttgcactctaaaatcaagaataagacaaggatgtccactgccaCCACTCTTAtccaatataattctggaaacattagccagagcaattagaccagagaaagtgataaa---aatattaa---gaagagaagaagttaaataatcattatttgcaaatgacatggtaTACTACAtaaa-gatgccaaaaactccaccaaaagacctGTAgacttaataatcaaattcagcagtgtagctggatacaaagttgaaactaaaaaaa---aatgac--------------------aacaaactcacacagaaagcagcaaaaaaccacaccctttataatagcatccaaaaatctgaaatgcttaTGAACCAATctaaacaaaggaagtaaaatatttatacactgaaaattacagtactctgtaaAAGGATATTAAAGacgatatcagaaaatggaaaaatatcccttgctcgtggatagaaagagccagtatagtgaaaatggccatactctcaaaaactggtacacagatttaatgcaatagtgatcaaaataccattagcatactttgAAGATCCagataaaataatcctaaaactcctttggagacagaagagatctaaaataacaaaagcaatcaatTCTGGGCAACGAAAGCAAATtgaggcatctcaatccctgatctgaagttatattacaaagctactgtgataaaatcagcgtggcactggcagaaaaaaaaaaaa

a score=84784
s chr3             7218546 4733 + 160039680 [encoded data, 4993 characters]
s HiC_scaffold_1 122750010 4727 - 233722169 [encoded data, 4993 characters]

a score=22479
s chr3             7218572 1812 + 160039680 catacaaacaggtgatggaaat----------gaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGCGA--------GGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAA--CAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGAC-ACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAA----AAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACAT--ATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAA-GAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC-------AATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAAAACCAAATTCACGCATTATCTCTCCAC----------GAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGA----AGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAA-GCCAACA-TTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAA
s HiC_scaffold_1 128746890 1734 - 233722169 CagagaaacagattttaaaaattggatagtCTaaccaaaacagttcaaaatcTGAATGGCATACTCAAAAGCATATGTAATACTCAAAAAGATGACAAACAGAAACAtctgaaataaaaa----agtatgtAATTCTTATATTACAGAAGTGatcaatgtgaagacagaatatttGAGACTGAGTGTAAAATAGTCAGT--------TTTGATAAAGATCTTGgtcaaagaaaccaaaaa-----gaaaat---aagaga---------aaactgtCCAGcagctacaagatgacaagaagaaGACCCATC-TAAGGCTAACTGGAGTGA--GAGAAT---------CCACACATTGATTCA-CAGGCATGTTTacagaaatcataaaagaaaatattccaaa-ataaggaaaga-----atttAAA-GTATAAGTGACATTTAGAG-----AATaga--aaacaagatttttaaaaagctcactTTGGTGCATCCTTATCAAAATaagttttccagaaaaaaaaactagaattttaaaaatagccagataaaaa---caaa-aacatgcataAATGTAAATCAATTAGAATTAcaccagacttctcaacacaaaccctagAGGCCAAAATGAAcaaggagtgaagtatttaaagctCAAAAAGAA-ATAACTTCTTGTCCAGATTAAATTATCCACCAAAGCTAACCcagcaaagctatctttca------aaataaggtatttccatgaaaaagatgAGCTCAAGATTGACTGCTAAACCAGTGTAAGAGAAAATACTTCTCTAGAGAAATACAACTAAAAATACAGAGGAAACCAGTGAGGTCAATGGGtaaatagcaacaaaaatatcatgaaacagaaaac---aaaggatACACAGACAGGTGATGAAGGC----------------AATGATAGTAAATAAACA---------------ATTTCTCAATGTTAGTGGTCTCAACTTTCCAAATAGAAGACAGAG--TGGCAGACAGAGTCAAAAATACAGAATCAATAGTCAGTTGTAATTAAGAagc--atctaatccaaaaatatattcagagactaagagttaaaggatgaaaaacatt-------GCATGCAGCATGACTCCAAAAACTAGCAGTGGTAGCAATTTTCATATCAGGCATAGTAAACTTCAAGATAAAATTGATTAGAACTGAAAAAG---GTTACTATATGCTatttaaggaaacaatacaacaagaagagataacattgACAaacatatgtgcaccaaatattGGAGCAcctatcttcataaaacaaaaactactgaaattaaaaaatca-ataaacactAACACA-TCACAGCAGGGTGTTTTCACATCCCACTTTCAcaaacaaatagatcaactaaacaaaaatgtaaggaaagaaatgaaagaattt-caGAGCTGAACCACATCCTTGAACTTATAGACTTAATGGATATATATGGAGTATTCCACCCCTTTACAACAGAGTATA--TTCTTTTCAGAAGCATATGatgcattttccaaaatagatcacatattagTCCATAAATCCTccttaaataaatagaaaagtac---------CATATGCATACTATCTGACGACTGTGCAATTAACATTGAGacaaattacagaagaaattctGGAAAAGACAATAGTTCcca--gaaaattaacaatatacTTCTAAACAAC-------CAATGGATGAAAtcaaggaagacttttaaaatttctggaaatt--ATAACAATGATAATACAATTAGCCAAAACCTTTGGGACACTATAAAAGTAGTTCTAAGAGGAAAATCCATTGCAAATAGAgctcacattaggaaa

a score=20734
s chr3             7218716 1623 + 160039680 ACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATG-GAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAAT-CCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC-----------------CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACT-------AAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTC-TCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAAC-CAAATTCACGCATTAT-------CTCTCCACGAATCCAGCCCTTCAAAGGATAATG---ACAGAAA----AAAACCAATACAAGAACGGGAACA-ACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAG-------CAACAATTA---CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAA--ATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCA
s HiC_scaffold_1 150311093 1575 - 233722169 ACAGAGTGCCTGAAATTGAGAACAAAATAGTGGATTAGGATGAATACTCAAAGAAACTC-----------CAAGGAAtataagagaatgagagacaat------------tATCCAACAGGTACTATGTGACAATAAGAAGGCCAGTCTAAGGCAAAATggattaagagaaaaattaaaatat--aacacaGATTT---ACCAATATGGTTTAAGAAATCatagaagaaaaatttccaaatataagAAAGGAGTTTAAAA--AACATTATTGATGCTTACAGTACAGCAAACAAACCtaacaacacaacaacaaaaaacaaagaagaagctTACCAAAGTACATCCTTACTAAATTATGAGatgtccagaaaaaaaaatgacaatagaaTTCTTttacaaacaaaagaagaaa---acatcacaCATAAAGGTAAACCAGTTAGAGTCACAGCCTACCTCCTAACATAAACTGTAAAGGCCAGAAGAGATTGTAGTGAAATACCTCACATCTTGAAAGCAAATAATTT------------------TCTAGCAAAagttgtccttcaaaatagatggagaaataaagtttCTCCATGGAAAAACATCAACTCAAAGGATATATGAATGTTAGCCATCACTAAAAATCATTTAAGAATATTCTccacagaaataacaaaactgactCAGCTAAAAACACAGAGGACATGAAAATTCCAAGTAAG--ATCAATGAATAAAGAGCAACAAAAaatgtcaggaaaagaaaagcaaacattcaCCAGCAGATAAAGAAGGCAGTTATATTCAAGAATCAACACATCTCAGTAGTATCTTTTAATATTAACAGCCTCAATTCTCCAATTAGAAGACAAAGATTGAGAGAATGGATTGACAAACAAAACCCAACTGTC------------AAAACTCATCTAATctaaaaagatattcacagacaaaaaattaaagggtagaaaacaacatttcatgcaCTAGGACCCCCAACACAAGCATGGGTAGTATTTCTAATACCAGAGATG-CTAAATTCAAACTAAAACTGattagaagacagaaagaaaagaactacTAACTAGTCAAGTGAACAatccaagaaaaagagataacattaataaaaatatatgcaccaattcTTGGAGCACCTATGggcataaaacaaaaactgctgaaGTTAAAAGATCAAGTAAACACTAATACAATCATAGAGAT---TTTTAACACCCCACTTT--Tccagagacagatcaactaga---aaaataaaaaaaaaaattcagagctaAACAACACT-CTTAAACAAAGAGACTTAGTGCATATATACAGAGTATTGTATCCT-CTGCAACAGAGCATACATTTTCTTCAATAGTTCATGTTACTTTTTCTAAAACAGAACATGTACTAGTCCACAAAGCTTgtgtaagaaaatacaaaagaattaaaattacccAAAGCAT--------------GTGCAATGAAAATAGAAGTCAAAGACAAGAGAATGTTTGTGAAAAGCAAAA--TCTCCTGGAAAATTAACAGCCTATCCCtaaataa--------acacagaagaaacc---aAAGAAATTGACAAATTTCTGGAAGTTATTGGTTGCGACTGTACAACTTATTGAAATTATTGCAATACTATAAAAACA

a score=15165
s chr3             7218775 1067 + 160039680 GGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAA--------TATCCAGGAAATCCAGGACA-CAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAA------TGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG--------GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCC-ACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCC-------------TTCAAAGGATAATGACAGA---AAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAG-----AAGACAGCCACAAGAACAGAATGC-CACCTTTAACAACTAAAATAACA--GGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACT----ACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGG-----ACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAA
s HiC_scaffold_1 185221884 1079 - 233722169 GACAAAACAGTGAATTAGAATTAAGAGTTCAAAGAAGCTATAAGAAAAAGAATAGGACTACATAGCAGCTCTTGGATGGCAACAAGAGGAACAATCTGAGGCTGACTGAGGTTAGAGAAAAACTGGGAGATAGCACGGAGGGATTCA-CTAACATCCTTttagaaatcatgaaagaaaatttcccaataacaagaaaacaatttaaagtacAAATAAGCATT------GCTCCTAGAACACCAAACAATTACGATGGGAAAAGAAACTCACCAACACACATTCTTATTA-AGTACCAGATATCC--agcaaaaacacaattttaaaagcagtcagaaGGCAGTGGGAAAAGATC---------------TCAAGTCTAGGTAAATCA-GctacacttctcaacacaaacactgaAAGTCAGAAAagcttggagggaagtatttcaagtcctaagaACAactaactttcaacccagattaattTACCTAGC-AAATATTCCTTCAacatagatggagaaat-aaagtatttctatGTGAAAGACCAACTCAGAAAATATATGAGTGCTAAGCCAGCTccagaaaaattactttaaaatattcttgacAGATACAGTAAATCAAATCAGATGCAG----------CTGAAAACAGAGGGAAACTGGTGAGGCAATAAACTAAACAGCAACAAAAGGAactgggaaaataaaaagcacataCCAGGAGACGAAGACGGCGACGGTAGTAAATGACACATCTCAGTAATAGCTC--AGTGTTAATGTCCTCGACTCGCTAATTAAAAGATATAGACTGACACACTGACTCAAAAAACAGAATCCAATAATCTGTTCCACTCAAGAAA-TCATCTAATCCAAAAA---AGACATTCTTAGACTAAaagttaaagaatggaaaacaacattttatGAATCAGGACCCCTTAAATAAGCAGAGGTATTAATTCCAGTATCAAACATGGAAAACTTCAAATTAAAAttgattagaaatgaaaaagaaggtgtcTCCACTACATACTAGCAAAAGGAACAACCCAACAAGAAGAGAGACTACAGataaacatatatgtaccaaGTACTGGGGCACCTATCTTCA-TAGGGAAA

a score=82278
s chr3             7218780 4463 + 160039680 [encoded data, 5075 characters]
s HiC_scaffold_1 119948109 4830 - 233722169 [encoded data, 5075 characters]

a score=20982
s chr3             7218780 1740 + 160039680 AACAATCAAAGAAAATGGAAAATGCAAAA-AGATCCTAACTCAAAATATCCAGGAAATCCAGGACA-CAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGA-AGAAAACTTCCCAAATCTAAAGAA------TGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAG-GTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAG-CCAGAAGAGCCTGGA--CAGATGTTATACAGACACTAAGAGAACAC-------AAACTGCAGCCCAGGCT---------ACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGT---AATCCCTCAA-----CAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATA---------ACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACC----------------CAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGT-------AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAA-CAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCC--TAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCC-TTCAA---------GAAAAAACGGG------AGAGAGCACATACTAGCAGCTTGAC---AACACATCTAAAAGCTCTAGAAAA-----------AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA----------TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 155665285 1713 - 233722169 aaaactaaaaaaaaagagagtatgGAAAATGGATCCAAGGAAAATGGATCCAACAGCTGTTAGACAACACAAAGAAGACTAACAGTAAGTGGAATTAGTGAAAATCAGAAGACAGG-------------------GAAAACGacataaaaaaatctgtttacagaGCTTATATCCAGTATGAAGAAACAACATAACACGCAGATAAGCA------AGATATGTAGATTCCTAAACAACCATAACCAGAAA-GAAGTTCTCCAGGACACAGAacagtcaaaattccagaagtccaacacaagaacagagtcTTAAAAAGCGTTGGAGAAAAAGCAACACATCACTCCTAAAAGTAAAagcattagaattacagcagacttctcaacaaaatcCTTAAAGGGCCAAGAGAGGCTGGAGTTAACTGTTTCACCCTCC--------ACACCCCCTTTAACTTTCAACCCAAACTCTTATAATTATTATGCCCtacaaaatt-----ttttcaaaatcgGTAAA--CATATCTTTCAATGACACAATGCATCTTATGAAATTTATAAACACTAATCAAGCACTCCAAAAACTTCT--CAAAGATAAcccag-------aaagaaacaatg--------aaactgagaatgtcaaaatgtttaaagaatgaaaacatcagGTAGGATGAGCAGTGAAGCAGAAGAA-----TCAACAACCAGAAAATAGTGCAGGACAGGAATAAGTAAAAACCTTTCAG-AACAGTTCTCAAAGTGAGAGGTCTCAAATCCTCAAACAAATGGTACAGATTACCAGATTGGAT-CATAAACAAATCTGTATTCTGTATTTAAGCAACACTTT-TAATCCACAAagaattcat---agactaaaaatttaaca-------------aaaga----aaaacaatattccaggGAACAAGAGCTCTAAAACAAGCCAGAGTAGCTATCCTGGTTTCAGACAAACTGGATTTCTAGCCAAAATTGATCAGAAAAGGTCAAGAAGGTCACTATGTATTTGTTAAGGCAACAATTCAAGGAAACAAGATTACAATTACAAACGTATATGA-CTGAACACTAGTACACCCAACTTCAAAAGGCAAACACTACTGGGCACAAAAGATTAGATCA-ACATCA------ACACAATTCTAGAGGGGGACCTGAGTACCCCACTATCACAAgtagaccaactagacaaaaaaaaaaaaaatcagagttccA---AAACT-----------TCTAACAAATAGACataatagatatatacatagtATTCTaaccaataaaatagaaaaatacac--ttattttGGCCATACACAATGCTTTCTACCAAATAGAACATACACTAGCTGATACAGCATGCTCGAGTAAATACAAGAGAATTGAAATCATTCTATGTGCATTATCCGCTCATAGTacactgaaactagaaatcaatggcaaaataaaccat-GAAAGTTATTG-AAACGTGGAGA-TAAACAATATACT------------CTTGATTAATCAATATGTTACTGAAGAAATTAGGAAGCTCCTGAAATCAAATGCCAGT------ACAACACATCAGAACCtacgggacacaatgaaagcaacactAAGA-GAAAGTTCATAGCTATGAATGTCACtcaaattacaaatgaaaaaaataactttacaGGGAGGAAATCCCAGTGACTCCACTTTAACAAATGTTAAAAGTTGACAAAATTTATAATGAGCAATAAAGCACTTTGACCTTTGAAATGATGAACTCAGAAAACCTCATCATCTAATCA----CAGG---GAAGCCaaacaagaaaaaccaaaaa

a score=18880
s chr3             7218867 974 + 160039680 GATAATAGGAG-----TGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTT-----CACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC-----AATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAA---AAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAA----------ACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAG--CAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACT-----GGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT----CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAA
s HiC_scaffold_1 125873502 963 - 233722169 GATAATAACAGAATTatagaaaaggaggaaaatttaaaa---gaaatttcaaaagatgTGTTCACTGAAATTATAGTATAAAACattccaaatataggaaaagaattcAATATCCAAGTATAGAAGATCTGTAGAACCCAAAATAGCCACGACCAGAAAAGGAGCTCTCCATGACACATcttaatcaaaattccagat--agtcaacaaaaagagaatactaaaagccattagagaaaaacAGCAAGTAATCTACAAAGGCTATCTCATCAGAATAATGGTGAATTTCTAAGAACAGCAGAAAGATTAAAGGACAGGAGAGCTTGTTGTGAAgtttt-caaaccctaaaagaaaacaactatcaGCCTAAGCTTTCATTTCTTGAAAATCACACTTCAAAATTAATACAGAAGGAATGAAT------TTCCATGATGAAGAAAACCTAAAGAAATCCATGGCCACTAAACCAGCATTGCAAAAAATACTTAAGGGAATTCCAGACAGAGACAAGGAGGTCACAAGCATC----AAAAGTCAAAAGGAAAGTTTACAAATAATTGAGAAAgtagtttaaaaaggaaaacataaaggaaTAAACAC------TGGAAAATGATACAATGGCAAATTCAATAAACATCTCACAGTGAGAACTCTCAATGTCAGTGGCCTTAACTCTCCAATTAAAAGGCACAAACTGGCAGATTAAATAGGGCAGAAAAATGAGACCATATAT-----TGCCTAAATGAAACACACCTCATCCAAAGAGAAATATATACACTG----AAAGTGAAAGAATGGGAAATGATTCTCAATTTAACCAG--AGACCAAAGAAAGAGGAGTAGCTATCTTATTTTCAGACACAACAGACTGCAAG--CAAAATTATCAGAAGAAACAGAGATGACCACTACATAATGATAAAGGGaacaataat---------------aattacaaatatctatgcaccaaatctCAAATGCAccaactttataaaataa

a score=89926
s chr3            7218898 4280 + 160039680 [encoded data, 4471 characters]
s HiC_scaffold_1 71341300 4226 - 233722169 [encoded data, 4471 characters]

a score=63174
s chr3             7218899 2862 + 160039680 AACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGA--CACATAATAATCAGAACATCAAATGCACTAAATA-AAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACG-------CCCTAGAAAAAACAAGAAGGTAATCCC-----TCAACAAACCTAA---AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCC---TCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAG-ACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAA-CAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCT-GATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCT--TGACAACACATCTAAAAGCTCT---AGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC-CTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG-ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCT---GGAAAGATCAG--------GAATTCAAGGCCAa-----------tacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaa
s HiC_scaffold_1 201749327 2678 - 233722169 AACTGAAAGTTTCTAATAACA--------AAAGTCAAGggaaaaaacttcccaagcagagaaagagaatttgacatacagataagtgaggtatatggAACTCCAATTAGCTATGATCC--AAATAAATCTATCCCAAGTCATATAGTAATTAGGATTCCA--TAAATTCAACacaatacagaatattaaaagatacaagagaaaagaaacaaatcacatatatatgaaagcccatcagaattacagcaaacttcctaacacaaacccttaagtcaaggagagtttggaatgaagtattacaatcccaaaaagaaaacaaccttcaacccagactgatgtacct-gaaaaactatctttcataaTTGATGTagaaaaaagatactttcattacaaagaacatctgaagaaatccCTGAACACCAAACCAGTACTCCAAA-----ATGTTccaaagaacattctagaaaga-ggtaACAAAGACTATAACTCCATGAATCCCAACAGGATGAATCTACATGGCAACAAAAGTAATTAAAGAAGGggaaca-aacaacagga-------------aaataacatgacaaggatgagtcagtacatatcagttataaccatcaatataaatggtgtcaattcaccaatcaaaaga--------aacagaatggattaagaaataagGTCTAACTagatgctgcatacaagaaatacatttaattcaaaaagaaattcatagacggAAAATCAAAGAGTGAAAAACAATAGTCCAAGTGatggaaacccagaaaaaagcaggggta----ttTTATGGGCAGACAAAGTCAATTTCAAACCAAGAAGTATCAACAGAGACATAGAAGGTTACTTCATACTTGTTAAGGGAGCAATCCCAATCCAAAAAGAGATAACAagcataaatatgtatgtaccaaATATCAGcacacacagttatataaaacaaatattaatgcacatgaaaaatcaagtaagcactaATGTAATTGTGATGGGGGGACCTCAACACAC-----TCAGAAATAGACtagccaaaaaaatcaaaaacgaaa-----------------tatcagaa---ataaatcaaat-----------------------------------------cagaatacacgttcttctcagctgcacatgggatgttctacAAAATAGATCACACACTAGctcacaaaacatgcttaagtaaatatgaAGTAatggaaattatcccatgcatactatcagaccatagcacaaTGATTATAGGAAcacaatggcaaaagaaaccacaaaaacttcgtaaatacatggaaa-taaataACCCTCCTGTTAACAA---ATTGGCCACAGATGAAACTGAACATCAAGtcaaacaatatctacaattaaatgagaatgccaatacaacatacaaGAATTTAAGGGACACCATGAAAGCAGTCACATGAGGGATATTTATAGAGGTG-------TCAAGAC-------------TCCCATATCAGAAACTGCTAAGGTTGAACCTCCAGCTTCTGccagaagaagagcaagtcaagtc---caaagctggtatgagggaagaaattataaagagcag-----aaattaatgcagtcaAGACTAAGAAACTAATGCAAAGAATAAATGAACCAAAGAGTTGattgtttgaaaaattaaataaacttgacaaacccttagtcaaccttatcaaaaaagtaaaaaaaaaaaaacctcaaatctATGCAGTTAGGAATGGCatgggtgaaatcacaacagatcctgcagaagttcaacagatcatcaatatctactttgaaactctgtattcttataaaatggaaaacacaggaaaaaatggacagattcctagattcatatgaattaccaaatctgtatcaagaaga---------tataaataa-cccaaatcagtcaatgaaattgaagacataattaaaaa-----ctaCCAAGAAAAGCCCTGGACCTCACACATTCACAGCTTAATTCTCTAAGAAATTTGAC-ACTATCTAATGCCAATAC--CTTTaactctttaaagaaaacaaaaggaaagcaatgtttccaaattcattcctcgAAGCAAGTATTACACTGAaatcaaaaccagagaatgatCTGACTAAAAAAAAGAGCTACAAGTCAATTCCCCTAATGAGTGTAGACAGAAAAATTCTCAGAAAGTTAcagacaaacagaatgtag------------------------------caagtAAGATTCACCCCAGGggtgcaaggatggttcaacatatgcaaatcaataaatgtaatccaccatatcaatagaggcaaaggacaaaaaccacatgatcatctcgaTAGATCCAGAAAAAGCGTTTGACAAATTCCAACACCCACTCCTGATAAAAATCCTTCAGGAATAATTGGATACAATAGAACCCAACTgcaatagatgatctttatctcaatctgataaaagc-----------caccaaTAGCCAACATCCTACTAActgcacaaaaactgaaagctttcactctaaaataaa-----aaacaaggatgtccactgtctccactcttattcagttTAGATCTgtaaactttagccagagcaataagacaagagaaaaaaat-aacatgaaaaagattgGAA---GTGAAGTTAAATTA------TTTGCAGgtaacatgatattctacataaaagaccaCAAAAACTTCACCAGAagtcttctagatttaataaccaaattcagcaggaTAATTGGACAcaa------------------aatagcattcctatatacaaatagcaaactgaacgagagagaaattagggaa-----acctttcataatagtatcaaaaaaaaaaaaa

a score=27843
s chr3            7218927 1749 + 160039680 CAAAATTA-TTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA--ACC-------AAATTCACGCATTATCTCTCCA-CGAATCCAGCCCTTCAAAGGATAATGACAGAAAA---AAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAA-----------ACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAA--GGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA--TGAA-------ACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAA---AGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAA--CAGAAAGCCAACATTCACATG---GAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA---CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC-------CCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAA---------TCCTAATTAACAAAATCAGAAAT----GAAAAGGGAGACATAACAACAGATCCTGAAG
s HiC_scaffold_1 18451917 1740 - 233722169 cAGAATTAATTGCAAGAACATTCCCAAGTTTAGCAACAGAATCTGATATCCAGATAAGTGGGGCATATAGAAATTCAAATAGCAATAACctaaataaatctatacctagcCATATAATAAACCATAGactagaaattcagcacataaacagaatatcaaaagctgttagagaaaaag--taaaagatctattaaaaCAT-----TTAGAATTGCAGCA-ACTTCTCAATAGAAAGCCTCAAGTTAAGAAaagattggagtgaagtattccaagacttaaaagaaaacaacttccaacccagattg--atgaccttcaaaattcac-------------tgaaaaataagatacttccataaccaAGTACCGCTGAAGAAATCCATGTTTAACTAATCCAATTAAACCAAGgttagaaagagtactgaaagatattctagacagagacgAAAGTGACTGCAATTCCCTgaacaacaagagaaagaaaccatcaggcaAGGAAAGCGATTAAACAAGAGGAAATATCAGTAAACAAACAATagcaa----aataacaagaaaaagataagacaatatatataatttatagtcaT------ATACAAATGGCCTcagttcatcaatcaaaagaaactgaTTGGCAAAATGGgtaaagaaacaagatccaacaatatactgtagTCAAGAAACAAAtctaactgaaaaaaagaaattctgagg-aaaggaaaagtatttaaaacaattttccatgcaacaggaaaccagaaaaaagcaggaataggtattctgtttgcagacgatttgaaaatcaatccaaaaatgatcaaaagagatttttaaaagttccataTATACTAATTAGGGG-AAAATTCAACatgaagagatagcaatcatctatatatatgtatcaaatatgGGTGTATCCAACTATAGAAGACAAATATTAAttaacataaaaaatcaaatatgtaataacacaattgtagcaagagaccttaataccccattgtcacaaag----agatca-----------actagacaaaaaaacaaagaaataaagagaactgAATTGAATCTATTGACAAATGGACAtactagatgtttacag--tgtttcAAC---AAACAAATTCAGAATACACCTCATTCTTGGTGCAT-ATGGGACATT-TCTAACATAAACCATATACAAG--CccatataatatttacataacttcaaaagaatttaaattatcccatcCACATTATCCAACCAttgtgcactgaaattggaaattaatgacaaaaaagaaagtgctaaaattacacatacacatacatgtaaataaataacatgctcttgaacaatcaatggttcacaaatgcaattaa-aaagaaattaaacaatatctaaactCAAACAAAAATGCAGCCACAATTTACCATAACCTGTGGAACACAATGGAAGCAGTCTTAAGCAGGAAATAtacagcagtgaattctcacattaggaaaatgtAATGAGCACCAATAAATAAC--AATGTTTCACTTCAAGGTTCTAGAAAATAAAGAG--CAATCGACATCATAGG-TTATacga-aggaaaaaattaaaaagctcagagcagaaattaatgcaattgagtctaagaaaacaatac-gagaactaatgaatcaaagagttgatgcTTTGGAAGAATAAACAACATTGATAAGCTAGCCAACCTtaacaaga------aaagagaacaaagaaagaaactgggacttcctgaaaaagcaa---agaaatatgggaagatgaagaaacaacaaaaagttcccagg

a score=21323
s chr3            7218928 1516 + 160039680 AAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAG-TATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATC--CCTCAACAAACCTAAAAGAAGA-----------------------------CAGCCACAAGAACAGAATGCCACCTTTAACAACTAA---AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACT-CGCCAATAAAAAGACATAGACTAACAAACTG------GCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCAT----CTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGAC-AAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT--CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTG-GGACACAATGAAAGCATTTCTAAGAGGG---AAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA
s HiC_scaffold_1 15467768 1426 - 233722169 aaaatcatagcagaaacaattttaaatctAGGGAAACAATTCAGTATTCATGTAAATGAGGCATAGA-AACCTCAAAGAGCTACCaccagaaaaaaa--tctacatattacatcataatgaaaatttcaaaaattcagcacaaagacaaaatactaaaaactgttagagggAAACTTCAAATAAGCTATAAAGGCAAACCTATCAGAATAATAACCAATTTCTCATCACAAACTTTAAAGACTAGGTGAGCTTGGAGCAATATTTCTC--GTACTAAAACAAAAGAAGT--CCTTCTAGATTTCTGTATCCTGCAAAATTCTCTTctaaaattgatagaaaaaatgaagatttttcatGACAAAGTAAACCTAAGGAA------ATTCACCAA-CCAAC-------------ATAgcaaaaaaatttcaaggca--------------tccCTAG-AGCGACAGGGAGTCCATCAGTCCCAAGGATCCCCAAAGAAGGAACATATTTAACTGGGAGGGTatttaaataagatgaaaaaatGAAACTCAACACTGGAAAAGTAATACAATGACAAATTTCAGCAAATACCTTACAGTAACATCTGACAGTGTGAAT-GTCTTGGCTACCCCAATCAAAGGACACAGAGGGGAGGACTGAGTCATGCCACCC---CAAATTCCAGACCTGTGTTGCCCACAATAAATACAGGTTATTCACATAAAACCACATAGGCTAC----AAGTGAAGACATGGGAGATGATATTCCATTC-ACTGGAAGTCCAAAACAAATATGCCTAGCTATATTATTTTCAGA-AAGACTAACTTCAAGCTAAAATtaattagaagagacaaagaaaagccACTTAATATTGATAAAAGGAACAACTTAACAGGAAAGagtaacagttataaatatata----------------------------------------ttgataGGTATCAAA------------------ACAATCATGGTAAGGAACTTCATTACACCAC-CTCATAAATAAACAGGTCAGTCACacaataaattaacaaat---------aaatatcagTCCCTGTCATGCAAATAGTCTTAACAGATATCTATAGAGTGTTT----CTTCAACAATAGAATGCATATTTTTATCAGTAGCCTATTGAACTTTACTCAGAAAGGACCATATCTTAGGACCTAAAGCATACTTTAGCAAAGACTA----ATTGAAATAATCTCTAGCATACTAGTACATCACAgtagaatgaaattagaaattaacagcaagaaaaaacacagaaactacACA-AAAAATGGAGATTCCATAATACACTTGAATAAACAAga----agtcacagaagaaataaaataagaaattaaaaagttcctaaaatcaaat---aataggaacacaaaatactaaaacttATGAGGAAATAATGGAAGTAGTTTTAAGTAGGTCTAAGATGGAAGTCTTTTCtgactttaaaaca-------ataaaacaattactaataatCTAATTATGCATCCCAAGGCCttggaaaaacaagaa

a score=36117
s chr3             7218932 1859 + 160039680 TTATTGAAGA-------AAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG-GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTG-CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCC-TAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGA----------AGACAGCCACAAGAACAGAATG----CCACCTTTAACAACTAA---AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGAC-ACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTA-ATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT---TGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGA-CACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAG---GAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAA-------CCT--GGATGAAATGGA-------------CAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGA
s HiC_scaffold_1 188662038 1803 - 233722169 TTATTGAAAGCACATAGAAATTTTCCAAATCTAGGAAAAGAATTCAGTACTCTAATAagagaggcatatagaaccccaaatagccacaaCCAGAAAAGAAACTCTGTATGACACTTCagaatcaaaattccagaaattcaaccaaaggagagaatactaaaagatgttagaggaaaaacagtaaataatcTGTAAAGGCAAGCATATCAGAATACCAGCAGATTTTTCAGCATAAACCTTAAAAACCAAGAGAGCTCAG--TGAAatttttcaagccctaaaagaaagtaACTTGTCAAATCAGACTTTTATACCCTGCAAAATAAGCCttcaaaactgatagagaaataaagatTTTCCATGACAACGAAATGCTACAGAAAtacatgaccactaaaccagaTCAGCAAAAAATATTG------CAAATCCTAAACAGAGGCAGAGATTTCACTAGCACAATGAGTGCCAAAACAAT------ACACATCTAAGTGGGAGAGTAGTTaaataaccagaaaaaaataaaggagtcaATGCTGGAAAAATAATACACTGACAGGATTCAGTAAACAATTCGCAATAATGTCTCTTAATGTCAACAATCTTAACTC-CAAATGTcaaaagacagactggcagattgaatcaaaaatcaaattttaatcaTGAGCTGCCTTCAAGAAACACACCTCATCCAAAAGGAAGCACAAagactgaaaaatgaaagaatggaaaacactACT-CATGCAATCAGAACCTAAAGGTCAGCAGCACTAGCTACCTTATTTTTCAGACACAACAGATTTCAAGACAAAACTGatgagaagagaaacaaatgacCACTATACACCAGTAAATGAAACAATTCAATGGGAAGAGATCTCAATTGTtaatataaatgcaccaaatgtTGGCATGcccaactttataaaacaaaaactgttagaCATATAAGCACAGGTAAGTGCA----ATACAGTAGTAGCAGGAAAATTCAATACTTCACTTTCACAAATAGGTAATT-----AGACAGAAAATA---AGTGAACTATCAGATTTAAACCACATcattgaacaaatggacttaatagatatctacagagtgttatacccaacaacaaaaa---atacatgtttcTCAGTGACAcacagaactttctccaaaaaataccacatcttagGCCATAAAG-ATgcttaaata----caaaagaattgaaatattcCTTTGCATACTATCAGATCACAATGGAGTAAGACTACAAATTAACAGCCAAAGAAACTATGGAA-------------------------------------CAATG-----TGGATCAATGAAGAAGTCAGAGGAGGATTTCAGAAGTTTCCATCATC---TGACAAGGGAAACACAACTTGCCAAAGCCTACAGGAGCACAGTGGAAGCCACTGGAAGAGGGAAGCTCATAGCCATAAATGCACAGATTAAAAAAGTAGAGTGAGTCCAAGTAcataacctaatgatgcatcaCAGAGTCCTAGAAAAACAGAGCAACCCAAATCCA---AAAACTagtag-----aaaaaattataaatctcaggatagaaatgaatgaaattgagactaaaaaa---atacaaagggtcaatgaatcaatgagttggttctttgaaaggataaataagacTGATAAACCCTTAGTCAAACTTCAcccaaaaaggaggaaaggaaaggctcCTATTActgcaatta-aaatgaaaatagtagAATCACAACACCACC-AATGAAATCCAGAAGTTTATAAga-----------------------aacagaactagaaaaaagccATCCTTAAAATTATATGGAACCTAAAGAGACCCAAAATACAAAAGCAATTCCAGATAACAAGAGtgaagcagga

a score=54021
s chr3             7218932 2795 + 160039680 TTATTGAAGAAAACTTCCCAAATCTAAAGAA------TGAGATGCATATGA-----ACATA-------CAAGAAGCC----TACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACC------AAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGG-ATAATGACAGAAAAAAACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAG--------AAGGTAATCCCTCAA-CAAACCTAAAAGAAGACAGCCACAAG---AACAGAATGCCACCTTTAACAACTAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCACCAA-TGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC-----ACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT-----GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTC-----TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaa-aatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 105534203 2886 - 233722169 TTACAgaaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtcaactccaattagccatgattaaaataaacaaacaaaaagaaaaaaaaaaaaaacacctcacacTGAGGCATATAATA----GGATTCCAAAAATTCAGCATaggaaaagaacattaaaaactattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGAAAagcttggagagaagtatttcaagccctgaaagaacaTATCC--CCGGACAGGTTGATGTAATCTGcgaaactttccttcaaaattggtggagaaacaagatacttttgtgacaaagaacacctggttgaaattcatga---------ccaccaagccaacactCCAAAAACATTCTGA-------AGACTAATATA-GAAAGAGAACGAAGACTCCAATTTCATGAGCCCCAGTAGAGTTAATCCACcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGGGAAATTATATGACAGAAATAAGTTAACACACATCATTCATAATCACCAATGCcaatggactcaattcaccaatcaaaagaaacagattggcagaatagctcaagaaacaagatccagggttggagatgcagctcagtggcacagcgcctacctAGCAAgatcaaggtcatgagttccttgcccagtaccaaaaacaaaacaaaagagaaacaagatccaacaatatgggGCATACAAGAAATATGTTTAACTTGGAAAGATATACATTAAC----GGTCAAAGTgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatttgcagtcCAAGTGGA-TTCAAGCCAAAACTGGTCAAGCCA--CAAAAAAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataagagtCATAAATATGTATTCCCCCAGGACCAGAACACCca-atacataaagcaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTTCAATGGGGGAATCTCAGTACCCTACTGACACAAAATGGGCAGATCAACTAGACGACAAATCAAAAAAAGA---ACTGAGTCAAACTT------TTGAACACATGGACTTAGTAGTTGGCTACAGAGTGTTCGGCCccaccacatcagaatacacattcttctccaaCCTTCAAGTCATGTTTTCCAAAATAACCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaaggaactgaaatcatcccatgcatattaGCAGACTCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAAAGTCC-TAcgaatatggaaattaaataacatccttctaaacaaccagtggatcacagataaaattaaagaacaaattagaaaatttctACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccATACAGAGAATGAATGAGTTAAAGAGGTGGTTCTT--GGAAGATGAAGTAAAACTGACAACCGCTTAGCAAAcattataaaaagttttaaaaaggaaacaaagtcttagatccatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATTCTATATCATATG--AATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAGTGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgaccAATTAAATTCCCTGCTAAAGTCTAGGAAGC--TCAGAGAAGACCTACCTAATGCTGCCACTCCTCAAACTCT-------GGTGAAGTTGAAAGGTAATCAGTACTCCCTAAGTCATCcatggaagcaagcattac-ctgaTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAGTCTACCTAATGAGCATAGACAGAAAAATCTTCAACcagatactatcaaacagaatgcagcaaatcatcacaaAGACCACACACCATGACCAGgtaggattcatcctagggatgcagggaGGGCTCAagacatgcaaatcaataaaggtCACTCACCACATTAATAGAACCAAGGATAAAAACCACTCGATCATCTCAATAAGCACAGAAAAATCATCAGACAAATGCCAATACGCATTCAAGAGAAAAACTTTACAGAATATCCAACTAGATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTTCAactcaatatagttttggaaacattagccaatgCAAttagatggaaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatcaatgTTAGTAGCATAGCTGGGTacgaagtcaacactcaaatatcaatagcatgcCTATACAAAAGtaacaaactcagtgagagagaaattaaggaaac

a score=31494
s chr3             7219123 2170 + 160039680 AAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATA----CAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTC-CACGACAAAA-----CCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA---------ATGACAGAAA-AAAACCAATACA----AGAACGGGAACAACGCCCTAGAAAA--AACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAA--CATCAATGGTCTCAACTCGCCAATAAAAAGACA----TAGAC--------TAACAAACTGGCT-----------------------------------------------ACACAAACAAGACCC-----------------AACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATAT------------CTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATT--GTCCCATGTATCCT-----------------------------ATCAGA---------------------------------TCACCATGCACTAAGGC-----------TGATCT------TCAATAACAAAATAAATAACAGAAAGCCAA----------------------------------------------------------------------CATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCT------------------------------AATTAACAAAATCAGAAATGAAAAGGGA-GACATAACAACAGAT--CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCC--AGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAG-GTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA
s HiC_scaffold_1 183082675 2313 - 233722169 AAACCTATTGGGATTACAGCAGACTCT-CAACTCATACCTTAAAGGCCAGAAAAGCTTGGAAAGAAAGCTCAGAATCaagctttaaaagaaatcaatttcCAAACCAGGCTGCTATACCCTGCTAAActagctttcaaaactgatgtggata--aagatattttcatgataaagagcatctaaagaaattcatgatc-----accaaaccagcactctgaAAGATTCTCAGTGCTATGTTAGAAATGCAATAAATATACCATGCAGTGTGAACAGAA---TAGAAGACAAACAAAATGG-----ACTCAGCAAA-----AGGAAAATAGTCT------------------------------AATGATAAGAATAAATCAATacttttcagtaataactctcaaagTATAAATGATATCAAT--ACCAATCACAACATAGGTTTGGACCAGGGACTTAGCCCAGTGGCTCAAGCCTTGCCTGGtgaatgcaaggtcatgagtttgatccctggtacaaacaaacaaaaacagtttgACAAGACAGAGAAACAGTATACTGTGTATAAGAAACaacatttacaaagaaatttaTTCACTA----AAAATTGAAGGGTACAAAACAGTATTCCAAGTAACAAGAACCTGAAAACAAGCACAACTATCTTTCCTTCTTCTAGACAAAGAGAACTTCAAGCCAAGTCTCATCAGAACAGGCAAAG---GCCATTATGTATTGATTAAGGTAACAATTAAAGAGGAAGATAGCACAGTTACAAACATAAGCACCAACTTTTGTGCTCTCAATA---------------TCATAAAGGAAAGACTATCAGATatcaaagatcagataaacatcaatacAGTTACAGTGGGGAAgctcaataccccattgtcacagatAGATTGACTA----AACAAAAATTTAGCAAACAAATATCACAGTTGAATCAAACTGT-AAATAAATGGACCCAACAGATATCTACAAAATATTCAACCCAATAATAACATAACACACAATCTTCTCAGTAGAACATAGAACTTCCTCTAAAAG-----ATATATAAGCCAATAAAGCATGcttaagcaaatatttaaaaatagaaattccgaCCCATGCAtgttcaatgaaactgaaagccaATTGAAAAACaaccagaggggctggggattgagctcagcggcataagtgcctgccttgcaagcaggcagtcgtgagtttgatccctggtaccagtaaaaaaaaaaaaatgaaaaagacaaaaagaaagaaagaaagaaagaaagaataaaagaaagaaagaaagaaagaaaaacaaccagaGAAATTATGCAAgtacaaagaaattaaacaatatagaCTTGAATAGACAATGAGTCATAggggaaattaaggaagaaattagataGTTTCTAGACTTTAACAATAATGCTTATACAACACACCGAAACTTACAGGtcacaatgaaagcagtattaAGAAGGGCATTTATAGCTGCGAATCCCCATATCAGAAAAGCAGCGTGAACTCACA---------TAATGATGTAcctaaaatttctataaaaagag-----aaattcaagTCCAAAGCTTGT-----GTAAcaaactataaagatcagaggagaaattaataaaattgagaataGAAGAC-----------------------ATGAGCtttttcattgaaagaataaataagatagaCAAAATCTTAACCAGTCTtgccaaaaaa-ggaaagacaaaatctTAACCAGTTTtgccaaaaaaggaaagactcaaatcaatagaattagaaatgaaaaaagatgaaGTAACAGTAGACTACATAAAAAAATCCAGAGGATTATTGACAACTGCTTCAAAATTctgtactcaaaaaaaaaaatagagaatttaaaagaaatgaactgaTTTCTAGATGTGCATGAATTACCTAAACTGGAtcaacaaaacttaaaaaaattgaataatcCAAAACTTGACAACTGTATTGCAGTGATAATAAAAATTCTGCTAACCAAGAAAAGACCAGGACTCTAAAGATTCA-CACTGAATACTACAATGAATTC-AAGTAGATCTAACACCTACATTCTTCA-AATCCTTTAAAGAAAATGCAAGGGAAAGAGTATTCT--CAAAGTTACTTTTGGAAGCTAGAATTACCCCGATTCTAAAATCAGACATAAATTCaaccaaacaaagaaaacttCAGGCCAATTTctataatgaacatagatgcaaaattacTCAGTAAGTCAATAGCAAACAgagt---gaaacaaatgaaaaatag-atgCATCGTGAGAAAATGGGCTTTGTTCCAGGAATCCAAGGATAGTTTGACATACTCATATCAGTACATTTAATGTGTCACATAAA------TAAGGACAAAACTCAC-----------------------AAGAGCCTTTTACAAAATCTCACATCTA

a score=49749
s chr3            7219166 3473 + 160039680 AAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAG-AAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATGACAGAAA-AAAACCAATACAAGAACGGGAACAACGCCC--TAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACA----GAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCT---TACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTG-ACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT-------TGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGAC-----AGATCATGGAAACAGAA--ACTAAACAGGGACACACTGAAACTAACAGA-----AGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGC--------CACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAAT-TAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT-CAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTC----TGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT-TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGA-AAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgt-aaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattag--------------aaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaa--aaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaact-----------------tcacataaaaccagagacactgaaacttatag------aggaga--aattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttaccta-----tcctaaatcagataggggactaatatccaacatatataaag-----------------aactcaagaaggt
s HiC_scaffold_1 18788857 3248 - 233722169 AATTCAGGAGAACTTGTAGTAAAGTATTTTGatcactaaaagaaaagaaattataaccCTGACTAATATATCTA-CAAagttgtctttcaaaattgatttaaCAAATGGGAACTTTCAATCACAAAAAACAGCTTAGAAATTCATCACCATTGAATCTGactc--caaaaaattctcaaggatatccaACTAGAGCCAAAGATGGCAGAAAGTCTAGTGGGTGGGGTAAATAGGTAAGCAGaagggggaaaagaaaggaaccggcaacagaaacataatgaatgcaa--tttcaaaac-agattgACA--------------CCTATCAGTAATAACTCTCCA----AATGGTGCAAACTCCCTAATCAAATGA----GATTGCTGTCCTGGCTA----AAAAAGATTAAGTCGTATGGTATCCTCTATACGAAAGACAATCCAAAAATAAACTCATGGACTAGAT----ATAAAAGTATGGAAAGCAATATTCTATGCAACTAAAGCCTAAAAATAAGCAGGAACGGTTATCCTATTTTCT--CAAAATTGTGCTTTAaactaaaactgatcagaagagggaaagaaaatcatGGCTTATTGGTTATGGG-----------------------AAATTCaacatatatatgttatatatat--------ttttatgtattatatatgttgtaatatatatatatatatatatatatatatatccctcactcacacata-------acttcataaaacaaa---cattactgGACCCGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAA-tattagttatttatttgttgaacaAGTGGAcctaatagatatctacagagtgt----ccATTCAACAACAACAcaga--ttcttctcagcagaacacAAAACTTTCTCCATA---GACCATATATCAgcccataaagcatgctt-aata-attaaaaaatatc--agttaTCTC-TAGCTTATATCAAATTATAgtgcaataaaactagaaatcaa-gccaaaaaaaatcagagatattATTGAAATACAAGgatatgaaataata-tattct-AATAATCAGCAagccacagaagaaatcaagaaagaagtgATAAAACTCCTGCCGTCAAATGA---TAAAACTAGTATAGCACAACATATCCTA------TGGATACAGTGAAAACAACCCTAAGAGTAATACTTATATTTATGAATGTCCATGAAGGAAAAATAGAGCAGTCCCAAACAAATAACCCAATGAT----------GTCCCAGAAAAGCAAGAA--CAACTCA------------AagctactgtaagaaatgaaacTTAAAGGATGAGATTGG--AAGTTATGATatggagaatga---aaaaaatacaacaaattgaAGAGctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTtaccaaaa-----aaagttaaaattatagctattaaaatc----------------------cagaagatcattaataa--------------------ctactttgaaaacatgtTCTGTATTAAAATtgaagaagtcaaaagaaat----accTTTCTAGATACATGTACATTGCCAAAACgaaaccaagaaaatataaaatctctGAATATTCCAATAGCAGGAAATAAAATTGCAGCAGTAAT-------------------AAAAACTTA---CCTGATAGATCCATTGTTGAATTTTACAAGAACTTCAAGATgaatttaatgccaatattcttCAAACTCTT-AACGAAACCAAAGTAGA--GTACTCT--CAAAATCATTTCTAGAAGCTAGCATCACTTACCGTGATTCTAAAACCATTGAAGGACCCGAGTAGGAAAGAAATCCATAGACCAATCTCTTTAACGAACATGAATGCAAAAACTTTCAACAAGATTCTGGA-AACAGAATGGGACAGATCATCAAAAAGAATGTTTACCGTAACCAAAATGGCATTAATTCTAGTGATATAAAGATGGGCcaacatttgcaaatcaataaatataataaactaCGGACGCAAAAGCTAGGGCAAAGATCATATGATCATCACAACAGATGCAGAGAAAAATCTTTGAGAAAGTCAaacacccattcataataaaaaccctg--aagatcta---------------atctcaatctgataagagcCATTTCTGTTAAACC---TGCCAATATCACACTAAAATGGGGGATGCTGAAAGAATTTCCTGTAAAATTggaaagaagacaaggatgtccatgatCACTGTTTCTATTCAGTGTAGTGCTCAAAACATGAGCTAGAACAATCAAGCAGGAGAAGAAGATAAAAAGGAGATGTGTGGGAAATAATGAAGTCAA---gttactatttgcagatgatttgatcctttata----------taaaaattcCACT--AAGATTCTTAGAGTTGTTAACCATGTTCAGCAATACAGTAGGACACAAAATTAACATACAATAATCAGTAGAATTCCTGTGCACCAATAACACACTcatagagaaggaa-------aaataataccattcacaatag-cactgAGAAAAAGTAATA-------------CTTACAAATTA--------ACCTATCTAAAGAAAACTAC-AGCTTctgaa-aaagagatt---gaaaataCCAGA------------CCTCTTTTTTCCTAAATAGGCAGAACCTATATTGTGAGAAATAATCATACTTTCAAAACTAATATATAAGTATCATGTAATCCTAATAAAAATGGGaccagcattcctcacagaactaggaaaaaaaaaaaaaaaaaaacaatcctaaaagtcatttggaactagaagagatcCAGCATAGCAAAGAAATCCTGGTCA---ACAGAAGCAAATCAAAAGTCATCACAACTCcaggtttcattttatattgcaaagctacagtgacaaaaacagcattCTGTTGGCACAAAG-CAGATATGCAGGTCAGTGGAATAGAAGAGAGCTTGCAGAAATGCCCCGAGGCACATTCAGCCATGTGATCTTTGACAGAGGGACcaaaaacctacactggagaaaagataacCACT--AACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGACTG------------TATCTCACcccatgaaataaaattaa----aagtggatTAAGTatctaatattaaaacagtatctaatattaaaacagaaa-acagaaacatgtagTCTATTGGGAGATGAATTTGGTAAAA--TTCAAAGATACAGGACTAGGTAAGGATTTTCTGAGCAGAACCCAAGTTGcaca-gaaataacatcaagaatcaacaaatgaggtTACATCACATT--AAAAGCTCTTCACAGTAAacaac-----cagcagagtgaagagtcaatctacagaatgggaaaaaaattttacccagctactcc----tcagacagagaacTATTGTTCACCGTATGTAATGGATTGTCAGCCACCATCAATTCAAGAAGGT

a score=38457
s chr3             7219352 2500 + 160039680 ACCAATACAAGAACGGGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACC---------TAAAAGAAGACAGCCA----------CAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACA---GAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCA--TGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGA-AAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAA-CCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAA---CTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATA------CTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATG---AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTA-TACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAG-------ACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA----CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacaca--aagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaa
s HiC_scaffold_1 128249785 2233 - 233722169 accaaaaaaagaaaaaaaaaaa--------agaaagaaagaaaggaatgcaTCAAAGAGGCAAGTATTTAtgcaaaaaaagagcaaataaaggAGTCAAAAACAG----------TCAAAGAATACAATGGCAGGAA--AATCAATACATTTGACTAATAACTCTCAAAGCAAATGGCCTCAACTCT---ATGGAAAGACAAAGATTGCCACACTGGATCCAAAGACAAAATTCAGCATTTTGTTGCATTCAGGAAGCTTATCCAATTCCAAAATAAagtcatagactaaaaat-caagaaTGGATAACAATATTTTATGTAGCAGTGCCCcaaaaggaagcagaaacagCACTTTTATTGTGT----AggtaaattttaaagtaaaattgatcagaagaggcaaagaaggtcactacatattaatTAAGGGAACAGTTAAACAGGAAGAAGTAACAATTGTAAACACTCATGTACCAA----AGGGGTACCTAATTTCACAAAACAAGTACTACTgtacataaaaaatcaaataaataccaACATCATCATAGTGCATtacttaaatatttcagtttcacGAAGAGACAGttcaagtaaacaaacaaaaatccataaaGAAATACCAACTCCAAATCACCCCTTTAAACA---GGACTTATTAGAGATCTACAG--TGTTTTACATATTTACAACAGAATA-------------------CACAGAactttctccaaagtagaccacaGATTAATCCACAAAGCCTgcttaaataaacatataagcaTAAAAATCACCCTATCTATATACTATCTTATCATTGTGcagtaaaactagaaatcaatcacAAAATAAACCACAGAAAATGTGTGAATATATGAATAGTAAATATTACATTCCTGAACAGTCAGtgggccacagaagaaattaagagaagtTATTAAACAATTCTTACACTCACACAAGACTGTAG-TACAACACATCTGAGTCCTATAGGACAcaaagaaaacagtcctaaatGGAAAATTTTTTAGGTCCAtactcacatt--agaaaaacagaatgagctcaaataaataacctagtgaTTTGGTGATGAACCTCAAA----TAGtaaaaacagcaacagcaacaac-----------aacaaca-aaaatagttcAAATCA-GAATGCAGTGTAAGGAGGGAAAtcataaggaa-----caaagaa-----------------------------aaatttaacaaaattgagaa--------taaaaattgtaaaaaggaggcaagaaaagattat-ataaatgcaattaaaaattttcaaaa-------attacaaCAGACACCACCAAAATCCAGAA-----------ACTACTATGAAAAAATAGTACTCTAACAAATTGATGAATCATgaag-aatgaatatatttatagataCTTAAGAATTACCAAAACTCAactaaaatgacataaaaattctgAACCATCCAATAGTAAGCAATAAAATTTcagaagtaatttaaaaactgCCATCTAAGAAAAATCTAGGACCTGATGGATTATGGATTCACCAATGAATTCTGCAAAACCTTCAGGGAGATAGTAATACTCATACTCCTCAAACtgtttgatgaaattgaaagaaagggAATACTTCCAAATCCAGCCCTGGAAGTCAGGatcactctgattccaaaacaagaaaaggactcaaaacccaaaaaaaga------------aatctttttgatgaacatacacacaaagattctcaataagtTATTGGCAAATAGAATTGAA-AACTTGTCAAAAGAATcatgcatcatgaccaagtagctTTCATCCCAAagatgcaaggatgattcaat-------gACCC----------------CCATAAacacaagaaagaacaaaattcacATGAACATCTCAATAT-TGCagaag-----------------------ccatttatgacaaatatt-------------------------------------------------------------------------------------------------------tctttctagagtcagaaacaaaataaggatgtccattgtcaccactTTAATTCAATATGGTATTCAAAACATTAGCAAGAGTAATTAGgc----aagggaaataaaaaggacatgtataggaaaggaagaagtcaatataata-----tgcagatgacatgatcctttacatgGAAGACCC-AAAAATTCTGTGAAATGATTCCcaaa-ttaataactaaattcagtagcatattaGGATAGATAATCGACACAtgaaaatcaatagccttcctgaacacaccaataatgaactcactgagaaagaaataagcaaaacaaaactattcaCAATGA----AATCAAGAGAAATTACTTAGTAATTAACTAAATCAATGAACTGAAAAACCTCTATGATGAAAGTTATAGAATTCT---ATAAAAGATTAAagttgattccaaga

a score=77039
s chr3             7219403 3523 + 160039680 TCAACAAACCTAAAAGAAGACAGCCACAAG-------AACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTAT------GAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTC--TGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTT-CAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATT----GACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCAT-AGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAA------------------------AGCCCAG---------------------------------------------------------------GACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGA---------AAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---------------------------------------------------------------------------------------------------AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCC-----AGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgat-aaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctcta---cacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttca---agt-ccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct-----caaggataa---aagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgg-gcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatcc---aacatatataaagaactcaagaagg-tggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaac--atccttaatcatcagggaaatgcaaatcaaaacaaccctgagatt----ccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaat
s HiC_scaffold_1 133185615 3530 - 233722169 tcaacaaaaacagcagaagaaaaacaaaggtcaGGCCAACAGA----------CAAAGAAGACAATGATAGTAAATAATGAACacatcacagtaatatatgtcaATGTTAATGGCCTCGATTCTCCAAAGAAAAGACACAGACTAAAAGATTAAATCAAAAAACAAG-TGCAACAATCTGTTGCATTTAATaaactcatctaatccaaaaagatattcatagactaaaaactaaatgatggaaaacaacattctttGCATTTGTTGTTTTCCTGAATCTGAAAACAAGCAGGAGTAGCATTTCTAATATCAGATATGGTAAACTTTAAGctaaaacagattagaagagacaaag---gtcactacatactagttaagggaacAATCTGACAGAAGGA----TAAAATTGACAAATACATATACACTGAATACTAAAGTGCCAATTTTCATGAAaactgctgaaattaaa---aaatcaaaca------ctaaCAGATTCACAGTGGGGGAATTATAACACTCCACTTTCACAAAGCGATGAACTa----aaca-aaactaataaagaaTTT--TAGAACTAAACCACACCTTTGAAGATACGGACTTAATGGATATAAACAGAATACTCCATCCCTCTATAACAGAATGTATGTTCTTTTCAGC---CTatggtagtttaaaaaaaaaaaaaagattacatgcTAAACCACAAAGCCTGCTTAAGTgaatataaaagaacaaaaattactgCATGCATGCTATCCAACCATTCtgcaatgaaaacagaaatcaatgacaagaaatttcagaaaagacaaaaaagaatctaGAAAATTAACAGTAtgctcctgaa------------caaccaatgggttatagaagaaattttaaaatttctggaagATAGTAACGATGACAGTACAATGCACCAAAACCTCTGAGACActatgaaagcagttctaagacaAAAATTTATCAACAATCAATGTTCACATTA-------GGAGCAAGCTCAAGTAGACCACCTTAAGAGAAATCTTAAGATActtgacaaaca--aaacaaaccagctCAAtt---------------------ccaaattaaggaaggaaattttacagatgaaa------------------------------------------------gtggaaatcaatgaaat--------------tcagactaa--aaaggactca-------------caccaatGCACttagaaa-----aagaggaaatcacAATAGATACTGTAGATACTGAGAGAATAGTTAATaagtactttgaaaaattatattccaacaaattagcaaattttgaagaaacagacagattcctagacatatACAAACTACCAAAATTAACCCAACAAGGTATAAATATGCTTAACAAcccaataacaagcaatgaaattgacaTAGTAATAAAGAATATGCCAACTAAAAAAGGTAGcaccaagggccagggatatagctcagtggcacagtgactgCCAGCAACCCTGAGATCATGatttcaattcctgatacaaaggGGGGGGGGACCTGACAGATTCACTACTGAATACTAAAAAACCTTTAAAGATGTTATATCATCAATACACCTCATGCTCtttaagaa-attgaaagggatgaAATGATCCCAAAATCATTTATGGAAGCG--TATCATTCTGATCACAAATTCATTTATGGGATCTCAAAACCCAACTAACAAAGAAAACTATAGGTCAACCTCCTTAATTAACATAtttgcaaaaatcttcaacaaggtattaacaaagagaatgcag---caCATTATCAAAACGATCATACATCGGACTAGGAATTAAGCTCAGTGgctaagcatctgcctggcaagagcaaggtaatgagttcaattcctggtaccaaaaaaaaaaaaaaccatacatcatgatcaagcaGGTTTCATCCCCTTGCAGAGATGCAAAGATGGCTCAACATACGTAAGTCAATAGATGCAATATATCACACACCCAGAAGCTACGTCAAAAACTTTATGCTCATATCAACAGATGTAGAAAAGGC-TTTCTCAAAATCCAACATCCCTTCA-------------GAGAAAAACAGATATTAAGGGCC-ATACCTCAATATGACAAAAAGCTACATATAACAAACCAATAGCCCACATCataataaatggagaaaaattaaaagtatttcccTTAAAACCAAGATTAAGATAAGAATGTCTACTATCACCTCTTCTATTCAACTCAGTACTTGAAGCATTAGctagaacaattaggcaagagaaagaaataagagagacaCATATAggaaaa---gaactcaaaatatcattatttgcaaatgatatgatgCTTTACACAGAAGACTTAAAGATTTCCACTAAAAAACTGTTAGA----ATAACAAACTTCAGCAACATAGTAAAATATAAGATCAA--TACACAAAT-ACTAGCATTTGTGTGCACCACACCAAATAACCAGGattagaagaaaattatgaaaataccaCTATTAACAGtagtttcaagaaaaataaaatatctacgaATTAATCTAATCAAGggagtgaaagatctatacaaagaaaactacgtacagtactttgaaaaaggagattgaagagaacatcagaaaatcaaaagatgTCCTCTGCTCCTGGACAGGCATAATCAGTACTGTCAAAATGACTA-CATccctaaactgttatacagaATTAATGCATTCCCAAGCAAAATGCCAACAGCATACTTTACAGACCCAGTAAAAATaatcctaaagttcatatggaaccagaagagacccagaaggcCAAAAAAAATTCTGGGCACAAGAACAAAGCAAGAA------GTAGAG----CATACCTGACTTCAagctacactacaaagcaacagtgattTAAACAGAATAGTaatggaacaaaaacagatacgTGGATCCACAGAACAGAACTGAGGATACAGAAACTTCTCCAAAGatattcaactatttgatctttgacaagggACTAAAAAGCAAATGGTGGAAGAAATACAGCTTATACAACAAGTAATGCTCGAGAAACTGGTTACCTGTGTGGAGAAGAGTGAAACTAGACCTTTATCTCTCACtacatactaaattaaaatcaaaatgaatcaaagatttaaatattaaaac--aaacatcaaacctactggaagacaaaaaagtaaaaa----tgaagacatatcatgtaggaaaggattttctaaatagAACCTCAACTGctccagaaataatagcaaaaatctataaatgagattatatcaaactaaaaag---ctatACAACAAAAGAATTAATCAATAGAacgaagagacaacctacagaatgggaagatgttgccagctactcc---tcaga----gaactaatatctagaagaatatataaagaactcaaaaaaattaaatcaccCAAAATTAAA-GTTCAAGTCgagaaatgggcaagagaaataaacagatactt------taGGGAA-------------AGAAATGTACGAAAAG----TCAACAAATAtatggtcactagagaaatgcaaatt-aaacaatgctaagattgatcccatcttactccagaaagactggcaatcattaagaaatca-ataataacaaatgttggtgaggctgtggcgaaaaaggaatcctcctacattgttgatgggaatgcaaactagtacaaccattatggagat

a score=6446
s chr3             7219406 1015 + 160039680 ACAAACCTAAAAGAAGACAGCCACAAGAAC---AGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAAC-----AAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGAT--AAGATTGACTTCCAACCCAAAGTCATCAAAAAA-GACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA--CACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGA----TCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAA----GGCTGATCTTCAATAACAAAATAAATAACAGAAAGCC-----------------AACATTC------------ACATGGAAACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGAC-AACACATC
s HiC_scaffold_1 134164096 1124 - 233722169 ATAAATCTGTTAGAGAATATTCAAAACAACTAGAAGATAAAACAACTAGAAGATAAAACAACAGCAGTACATCCTTACCTATCAATAGTACCCCTGAATTTAAATGGATTAAATCCTCCAATTATAAGATACAGACT--------GgctgaataaatttaaaaagacccAACAAAATGTTACCTACAACATACTTGCCTcatcattacacacacacac--acacaaaatggtaG---------------TCCAAGCAAGCAGAA-ACCTAAGCAAGCAAGAGTAGCTATACTTATATTTGATCAAAGAT---------------GGTCACTAAATAATGACCAAGAGA------------TCAACAAATATAA-------------------TTGTCTGTAAATCTATATACACCTAATGTTGGAGTagtctattttataaaataaatgct-gtGATCCCCAAAG-AGATAGGGAGGTTCCATTATAGCAGCAGTGGGGAATTTTAAC----CACTTTCATCAATGGGCatat-accaaaacaaa---caaacaacaaccca--GAGTTAAACTATACTTATAAACCAAACTGACTGTTCTAAATTATTACAACAGAACATTTCA----AGAGCTGCAGAATATA---TATTATCAGCAG---ATAGAACTTA----------GACCATGTACTAGGATGCAAATGAGtcat-aacaaattttaaaaaac-aaaatcat-------agctTTTCCAATCACCATAGAATAAAATggaatcaacaacaacaacaacaaaaacttcagAAGCACTATAAATTTTTGAACAAAACATTGTGTGTGAGTGTGGTCTGGGAATTGAATCAAAAGCTTTTGTACTGAGCagttcattttcttcctcctattcttctccctctcctcatctcatttcatcattttatgacacagggtcttgctaagttgcccagcctaaggttaaatttgtgatcctcctgtgtctgcCTGCCAGACTACTGAGATTAGAAGTCTGCACCCTACATCCAAAACTCTCCTGAAAAAAAGCCTGATTACT-AAGGAAGTcagatggaaataaaaattgcttgaaaga--aatgaaaatggaaacacaata-aGCCAAAACTTGTAGATGCAACAAAAGCAGTACTAAGGGAGAAGTTTATAGCCATGAGTCCCTACATTAAAAACAGGAAGAGGATA-ATGCTGG--GTTCCACAAACACATC

a score=56988
s chr3             7219415 2596 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAA--TGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACA------CTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAA-AACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAA-CACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA--AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGA--AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTA----CCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTT-ATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAAC-------CGAATCCAAGAACACATTAAA----GCAATCA--TCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT----AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaata
s HiC_scaffold_1 154830298 2418 - 233722169 aaaaaagccA---ACAGAGAAAGAATGC----------------AATGACAGGAATGAATCAGTACCTTTCAGGAGTAACTCTCACTGTAAATGACCTAAACTCTCCAATTAGA-GACACAGATTGGAGAATGGATCAAACAATGAA--CCAAATGGTCTACTGTATTCAAGATcctcatctaatccaaaaggaaacacatagacTAAAAAAATTGAAGGATAAGAAACAATATTACATGAACCAGCCCCCCAAAATCAAGCAGTAGtagaagttttattttcaaagaaaataaattttaagctaAAACTAattagaaaaggcaaagaaagtcactacttATTAGTTAAAGGAACAATTTCACAGTAATAaataacaattattaatataCATGCACTGAATATTGGGGCAcctaacttcataaaacaaatactccTAGATATAGACCATCAAATAAATACCAATATAATCATAGTAGGTAACATCAAGACTCCACTTTCACAGAtacacagatcaactagacaaaacatTAACAAAGGAATATCAGTTCTGAATCACACC-------TTCGACAAATGGATGTAA--GATGTTTACAGTGTGTGTCACTCTAGTAAaaacagaatatgcattcttctcagtagcacatggaaccttctccaaaatagaccatctT-TAGTCTACAAAACCTGCTTAAATAAATACCAAAGAATCAAAATCACATCATATATAACATCAGATCATAGCACATTGAAACTGGATATCCATTGCAAGAAGAACTACGGAAATTTTACAAACACTTGGACGTTAAAAAAACACTCTTGAGCTCTCAGTG-------GGCCACAAaaggtatcaaaaaagaaag-aaacaatgagtAGACTCAAATGATAGTGTCAAAACAACATACCAGAACCAATGGGCCACAGTGAGAACAGTACTAAGAGGGACATTTCTAGATGTGAATGCTCACActaaaaaaacagagagagagatcaaataaataacctactgATGCACTGTAAGTAACTAGAAGAACAAGATCAGTTCAATCACTGCTTAAGA-------ACAGGAAATTCATAAAATCAGAGCCAAAAAtaatgtaattgaaactaaaagaga-ataaaaagaatcaatgagttgaagagctggttctttgaaaaa------aaatgagacaaaccCTTAGGCAAACTTaacaaaagaaagagggaaaagaaccatatcaatgcaattagaaatgaaaacat-gaaattaCAACAGATACTATGGAAAGCCGAAG-ATCATTAGTAACCACTATGAAAAATTGTAGACCAATAGATtggaaaatcttgaagaaatggatggatgcttagattcatatgaattactaaaactAAACCAAGGAAACATAAAACTTCTGAACAATCCAATATTAAGCAAAGACATTGAGGCAGTAATAAAGAGATCTACCAACTAAGAA-------------------TTGAATTGAAAGGC--------------AAGAATATCT--------------CCAATCTCATTT-----ATGGAAGCCAGTATTATTCTAATTCCAAAACCCA---GATAAAGACATAATTAC----AAAACTAAACTACACTA------AACTAAATAAAAGAACTAGTAGTCAATCTTTGTTAATGAACATGGACACataaatcctcaaaaagatactgGCTAACAATGgaacaaataataaaacagactatacatcatgatcaagtacaTCATGCCCAAGTAGGTTTAATCCTAgggatgcaaggatagttcaacatagaCAAATCAACAActgtaatacaccacataaagAGAAGCAAGGACAAGAACTACATGATCTTATCAGTAGATgaggaaaaagcttttgacaaaattcaaca-tcatttgtgatttaaaaaaactctgaagaaaatagatacagAAGAACCTaaactcaatctgataaaagccatttatgacaagccaacagctaatctcatattaaatggggaaaagctAAAATCA-------------CAAAGA----ACCAAGATATTCACTTTCACCATTCTTACTCAACATAGTAC-------ATTAGCGAGAACAAAAAGGcaacagaaagatagaaaaaggatacatataggaaaggaagaagtaaatttATTA---TTTGCA-ATAACATAATCTTACACATAGAAAAAcccaaaaa-tccaccaaaaggTTCCTA---------------------GAAGTAA------------------TAACCAAATATATGG---------ACACCAACAATGAACCCACCAAGACAGAATTGAGGGAAATattaccattcacaatag-caccaaaaaaattaaatactttgatATTAAtgtaaccaaggaaatgaaa-------accATAGGATTCttaag------------gagatcaaagaagacattagaaaattgAAAGTTATCCCCTGTTTCTGGATATGCAAAATCAACATAGCTAAAATAACCATACTCCCAAATG-GATATATAGAGTTTATGCAACCTCAATCAAAATACCTACATAATtcctcacagaaatagagaaaataatcctaaaatgtATATGGAATA

a score=9682
s chr3             7219430 422 + 160039680 AAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAG-AGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACA--TTCACTAAAGAAACTTTAGTAAA
s HiC_scaffold_1 215396080 409 - 233722169 aagaataaaaaa--attttttaaacccTAAATGACAGGTTTTAGTACTTACCCTTTTATAATAGCAATGAATGTAAATAGTCTtaattctccaattaaaaaacaaaaactggtagTCTGGATAAA-AAACAATATGCAACTCTTTGCTGCTTTCAAGAAACATACCTCACCAGCAAAATGCATACAGAGACTGAAATTGACAAGATGGAAGACAAAATTTCT-TCAAATGAAACCTAAAATTAAGTAGGAGTAGCTATCCATGTATCTGACAAGGCAGATTACAAGACAAAATTAGTCAGACAAGACAAAAAAGGCTACTACATATTGGTAAAGAGAGCAATCA-CCAAGAAGgtataacaattaaaaatac-----------ataacacAGTAAACACAATTTCATGAAACAAACATTACTCAA

a score=5983
s chr3             7219450 660 + 160039680 AACAACTAAAA-----TAACAGGAAGCAACAATTACT----TTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-----GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTA-ATATCTGATAAGATTGACTTCCAACCCAAAGTCATC----AAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACAC-ACTGAAACTAACAGAAGT---GATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCT-CAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATT
s HiC_scaffold_1 177518002 631 - 233722169 AACAACCAGAAAGTGACAAAAGGGAGTAGGAAATTCTAACATATCAATAGtcactttaaataatatttgaataaatttgtCAATCAAAAGACAT---CAAACAAACTAGATG---AAACAAGACTGTTATGTATGTTGCT-ATAAAAGACTCTCTTCACCTTTGAGGCACACGTA------AGCTAAAAATGAAAGGAC---------------------------tgacaaaaaaatcaagagtagCTTTCTTATGTACAAAATAAGA----CTTTAAGTGAAAAATTAACTCTAACGAGTGACAAAGAAGTA-ATTATATAATGAGAAAGGACTTACTTATCAACTGAAAACATTTGCATATG--TATACATGTTC--AGTGTTGAATAATCTgaatatataaatcaaatattaatAGATCTGGAGAGAGAAATAGACAGCAATGCAATAATAGTAGAAGACTTCAATATCCTGTATTTGACAATGGATAGATCATCCAGGCAGAAAATCAATAAGGTCACAACTGATGTGAAGAATACTGCAGATCAAACAGAGCTAGCAAAAAAATATACACCAAGCATTCCATCCAACAGCAACCAAATACAAATTCTTCTGAAGTACCTGCTGA-GCATTCTTCTATA-TAATCACAT--TAGGGCACTAAACGAGTCTTAGCAAATT

a score=17035
s chr3            7219453 1266 + 160039680 AACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAA--ATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGA---CACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAA-ACTAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA-ATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGAT-----CCTTCTACAAAAGGCTATACTC
s HiC_scaffold_1 64285215 1148 - 233722169 aaacaatgtaaCAATAGGTATCAGTCAACACCTATGATTAT-TCTTAATGCAAATGATCATATCatcccaatcaaaagacacagactgacagATTGAGTCCTAAAACACAACCCAAC--------------------TTAATCTTAAAGAAAGATATA------ATctgaaaattaaaggatggaaaatgatacTGCATGAAACAGCAGTCTTAAAGACAATGGGAGAAT-----------TATTTTATA---CTTAGATCAAGCGGAAAGCCACAAAAGATTACAATAAAGTAAGTTACAACATACTGGTAAAGAGAATAACTCAACAGACAGTTataacaattttatatatata--------------gtgcatctaattttgtaaaataaat--------------------------------------------------acttC-------CACTGTTACAAATACATAGGTTAATCAGGCAAAATGCtataaaag----------aaatatcagaggTAAACCACACCTTAGAACAAATGGCCTTACTATATAACTATGGTATATTTTACTGAACAGAAACAGAATCAACATATCTCTCAGCAACACATGGAACTTAATGCTAA-TAGACTCCAACTTAGATTACAAAGCATacgtaaataaatgcaaatgaatcaaaataatctcatgcatattatcatgtCATGGTATAGTGAAACTACATACCAATGGAAAATGAAACCACAGA--GGCTATGTAAACACAGAGATTATATAATACACTCTTAcataatcaataggtcacagaaaaattaagaaagaaagttaaaaagttCTCAGATTTAAATAATATTAGCAGTATAATGTACCAAAACCTCTATGACACAATAAAAGCAATCCTATCAGGGAAGCTTATAGCTGTAaatacacacattaaaaaaaaagagtgagctcaaataTATAACCTAATGATGCCCCAGAATGTCCTAGGAGAATAAGAGCTATGCAAATCCA---AATTGGTGccaa--gtagtaaattat-aaaatcagagcaaaatttaataaaattgagactaaGATAAc-atacaaagaaccaatgaacCATAGAGCTGGTTCTATAGTAGGATAATCAATATAATCAAACccttaattaaa-ttattaaaa---aaagaagcaaagactcAAACCAATGCAATTagtaatgaaaa---aaacaaaatcatgg----tGAAAAACCTCTGAAATCCAGTATATAAGTAACTACTATGAAAACATATATTC

a score=79409
s chr3             7219457 3530 + 160039680 AAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTA-AAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATT--AAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATT-CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC---------AAGAAGAACTATTCAAAGAATT--AACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC--------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggag------agaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat-gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct----caaggat--aaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaa--gccttgaagatatgggcacaggggaaaaa-ttcctgaacagaacagcaatggcttgt----gctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaac-tcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcag-aactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatg--------gctaagatcaa------------aaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctct
s HiC_scaffold_1 207798378 3418 - 233722169 aaaatgatagtaAATAATCAATGTATCTCAGTTATATCTTTCAACATGAACAGCTGTAACTCTCCAACTGAAAGACATGAAttggcagactggatcaaaaaacagaatccaacagGCTTCTGCATTCAATAAACTCATCC-----AAAAATATCTACatagactaaaaattaaaagatagaaaacaatattacatGCAACAAGACCCAGAAAACAAATAAAGGTGTCAATTTtaatatcagacacaataaacTTCTAGctaaaactgattagaagagacaaggt----cactacataattaGATAATGAATCAATCCAACAAGAGATAACATTAAT-----AAACATGTGCACCAAATACTGGAGcacttttcttcataaaatagaaactgctgaaattaaaagatca-actaaacatgaaaaaataataaaga---attttaacaTTCCACTTTCATAAAT------ACCAACTAAA--AAAACCTAATGAATAAACTTTAGAGCTGAACCACATTTTGAA-CATATGGATTTCATAGATATTTATAGAATATTCCACCCCTCTACAGCAGAGTATACATTCTTTTAAGTAGTAAATGGTATTTTTTCCAAAGTAGGTCACAAAGTATTCCACAAGCC-TGCTTAAGTAAATTTATAAGGATTGAAATAACTTCATGCACACTATTAGACTAATGTGCCATGAAAATAGAATTCAGTGACAGAAGAAATTCTGGAAAAGCCAAAGTCTCCTGGAAA--AATCAGCAACATacacaatca---atgggtcacagaagaaatca------aaatttaaaagaatttctagAAGTTAATGACAATGATGGTACAACTTACCAAGACCTCTGGCAGGCTGTGaaa----ttctaagaggaaaattcattaCATTCAAggctcacattaggaaaacagagaaagctcaAATAAGTAATGTTATAAAAAATCTTAAGACACCTGAGAAACAACAAACCACTTCCACCCAAAA--ATTAAATAg--ggaaat-------ttaaaagatgaaatcaatgaaattgagacttaaacaaaagtaaagacagttaaaaaaactccaacaaataaaagagttggttatttaaaagaataaataaaagtgataagccTTTATCCAAACtcaccaag----aaagagaaaagatttacaTCAATTTAattatgaaggaaa----taaaatcacaacagatactGCTAAAATTCGGAAGAGCATAA----CTACTTCAAAA-ATTATGTTCCAACAAGTTAGTAAAGTTTGAAGAAATGAGTGGATTCCTTGACACATACAAACTCCTAAAACTAACCAAGAAAGACATAAATATGCTTAGTGATCCAATAATAGACAATGAAGTTGTCACTGTTGTAAAGAATTTACCAACt--aaaaagcccaggacctgatggattcactactgaattctgcAAAACCTTTAAGGACGCTATATCACTAGTACTCTGTGAGCTcatcaaagaaactgaaagggatgGAGtactctttaattcatttatgGAAGCCAGTAATACCTTGATCCTCAAACTGGAtagagacccaactaaaaaaaaaaaaaaaacaactatagaccaatctccttaatgaacataggtgcaaaaaccCT---CAAGATACTAGCAAATAGGAGGCAGTGCATTATCAAAAAGATTATGTATCTTGATCAAGTTAGTTTCATCCTAGAGATGCAAGGAtgcttcaacatatgtaaattagtaaatgtaatacatcacattaacAGAGGC-AAGGttaaaatcaaatgatcatattaatagatgtagaaaaggcttttgacaaaAATTCAACAc-----catgataaaaactctgaagaaaagatGTATAAAAGGACCCTATCTAAATTTGATAAAAGT-ATGTATGACAGACCAATAGACAGAATCATaataaatgaggaaaacaaaaaactaaaggcATTCCTTCTATagtcaggaataagacaaagatgttctTCATCACtttttctattcaacatagtacttaaaacattaaccagagcaattaggcaagagaaaaacttaaaaaag-----tgtaggaaaggaagaactcaaattatcacTACTTGTAGATGACATAgatattctacacagaagacccaaaGAACTCTACAAAAGA---CTTAGAATTAATAAGTAAGTTCAGCAGTG----------------TAACACACACAAAGCATAAGCATTTGTGTATACCAATAATATATCTGATGAGAAGGAActtatgaaaacaatgctatttaCAGTAGCttcaagaaataacaaatacctatgaattaacataa------aaattaaagaccTCTAC----AAAGCTACAGTATTCTG-AgtaggagattgaagaggatattagaacaTGGAAAGGTGTTACCTATGCCTGGGtaagcagaaccaatattgtcaaaaagGCCAAACTCCCAAAACGGTTATGTGGATCCAATG---TCCCAATCATAATATCACCAGAATACTTTGCAGATCTAGCAATAATAATCCTACAATTTATATGGATCCAatagagacccagaatagcagaAGCAACTTTGGGACAAGAACAAAAAAGAGGCATAGGTA--------ACACCTGACTTCAAGCTATAATACAAAGCAACAGAGATAAAGATGACATAGTactagaacaaaaacaaata--tgtataaaCAGAAAAGAATTG-GGATACATATACTTCCCTAGACACATTCAATtatttgatatttgacaaagggaacAAAAGCATATGTTGG-----AGATAGTTTATTTGATAAAgtatgctggaaaaactggttatt----tgcagaagattgaaacaCAACGCTTATCCCTCataatatactaaattaaaataaaaatggatctaaacat------taaaacta---aCATTG--TctatttgaagataaaataggACAAAATGGGTTAAAGATGTAGGTGTAGGGAAAAGATTTTCCAAATAGAACCTTAATTgcagataaaaaatacaaaaacaaggcTCAAC-AGTGGAATTATATCATACTAAAAAG-CTCTGCTCAGCAACAGAATCAAtcagtagagtgaagagacaacctacagaatggagaaaaatttttgctaagcactcttcagaca--ggactaatatctagaatatacaaagaacaccCCAAAATTAAACCACCGAAAATTAAA-GACTCAGTGAAAAAATGGGGAAgagaaaatgaatagacacttcacagaagattaaatacaaatgttcaacaaatgtgt-aaaaaatgttcaatatgttCAGCTGTTAGAGAAAT-CAAAGTAAAGCAATGCTAAAATTCCATTTTACCCTGGAAAAAATGTCAGTAATTCTGAAATCAAACCAATGATTCTAAAATtgaacaacaaaaaatgctggtgTCATTGTGGTAAAAAAGGAACC-----------------------CAAACTAGTCCAACccttatggaaatcagtattgagttttcttaaagaactgaaattaaaaatttcatatgaCCCACTTATGCCCCT

a score=36353
s chr3             7219459 2262 + 160039680 AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATG-AAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGA-CACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAA--CCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTT-------CAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC---------------------------------TAAAGGGCACAG-GGACA---------------AAATCCTAATTAAC-------------------------------AAAATCAGAAATGAAAAGGGAG-------------------------------------------------------ACATAACAA--------------------------------------------------------------------CAGAT-----CCTGAAGAA-------------------------------------------------ATCCAAAACACCATCA----------GATCCTTCTACAAAAGGCTATACTCAACA---------------------------------------------------------------------AAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA---TCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggc-tgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccct--------------aaaaat---tccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
s HiC_scaffold_1 225980954 2525 - 233722169 AATGGCAGGAATCACTAAATACCTGTCAGTAATAATgttcaatgtaaatggtcttaactTCCAAATCAAAAGTCATAAACTGGCAGATTGGCACAAAAGATGAAACCCAAATGTATTTTGTCTTCTGGagactttatttacaaaagaaagcatataaa----cagaaagtaaaagataGAGAACAATATTTCATCCATTTGAAACCATGAAGCAAGCAGAAGTATTGATTCTAATTTTgaataaagtgaatttcaagacaACATTGATCAGATGAGACAaaaaaagatcactacatactcat-aaataaaaaattcaatgaTAGGATGTAACAATTTGAAATGTGTATGCATCAA-TAATGGTACATTTGC-TTCATGGAACAAAAACTACTAGACATAAAAGGACAGATGGACACCCTCACAAACTTAGTGGGAGACTTCAGGACCCCACTTCCACATATAGATAGGTCAACAAGATAAAACTCCAATAAAAA---ATTCAGATTGAGCTACACCATTGAACAGATGGACTTAGCATATTTCTACAAAGTGGTGCATTCAACAGGagtagaaaacacatttttatcaGAAGCACAGGG-----------AAATT----------TAGGTTATTAaccatgcttaaataaatacaaaaagactgccataatgtctttcatt-tgttGGATCATAATGga-----actagaaatcaacagcaaaagaaaccaca-aaattaTACAAGCACCTGGAGATTAAATAGTATATTCTTGAATAGTCAGTGGGTCACACAAGGAAGcagggagaaaattaaaaatttcctcaAATC-AATGACAGTGAGAGAATGGCATATCAAAAAATCTATACAGCACAGTAAAG----TTCTAAGAGAAAAGTTTATTACTGTGAATGTCTAATTTTTACattggaaaaatagagaaatttccAATAAGTAACCTAGTGATACATCTCAAGGTCCTGGAAAACAAGAGT---AATTCAAATCCAAAACTTGTAGgcag-aaaaaattacaaagattGGAGAGGAAATCagtgaaattgagactaaaataaTAGTGTCAGTGAATCAC----------AGTTCATTctctgagagaataaacaaat--gatAAATCCTTAGTCAAACTtatgaacagaaggaaaaaattcaGTCCAATTAGAAATGAAAGTCACAGTGGACATTATTGAAACccaaagaattttaagaaactatttcaaaatttatattcctttttaaatttaagattaaaaatacacaggaaagaaaaaaagtagtacAGACAGATAAACAAATTAATTataataacagtataggtttacaaaacaagatgatagaaatttaacaatggttgtaataatgcatattgttaccttcaacaGGATTGCTTACATTAACAGATATAGActtgtaaaattgatctaaacttgagtgttaactgttttaaaatgaaatattgtttATGATCCAAGAgacccttattttttttttaatttttgtatcagagatcaaactcacaacctcatgcttaccaggcaagtgcttgagactgtgaactaaatccccagaccccaaaaTTTAATTCCAATAAACTAGAGAATCTAAAAGAAATGGGTAAATTCTTAAAtgcacatgaattaccaaaactgaaccaag-taGATATAAAATCCCAAACCAACCAATAGTAGGCAGTGAAATTAAGGCAGTAATGAAG-----TCCtactaagaaaagcccagaaaCTGATAGATTCACCACTGAATTATACTAGTACTTCAGGAAAGAGCTAACACCAGTGCTTCCTAAAGTCTTCGATAAAATAGAAAGGTATGGAACACTGTCAGGTTCATCCCTTGAAGCTGGCATTACTCTTattctaaaaccagaaaaagaaaatgaaagaaagaatgaa-----caagccaatatcattaatatatatagatgcaaaaatattcaT---GATACTTGCAAACAAAATACAAGTAATCACCAAAAGGATCATACATCGTGACAAAGTTACCTTCATTCCAGGGATTCAAGATTGGCTCAATATATGTATATCAAT-AATATAATACACAACATAAGTGAGGT--AAGGATAAAATCGCATA---ATCTCATTAGATGCAGAAata------------atccaacatccattcatgttAAAAAGCCTGATGAAAATAGGTA--------CAGAATATCACACTGGTAAAAGTCATTTGTATTAAGCCTATTAtcagtgtcatactaaatggagaaaaattgaa---ACTTTCATTGCAAT----ATCTGGTAAAAGCATGTCCATTATCATGACTCTTGTTCATTATAGTACTCAAAACTTTAAACATAACAGttagacaagagataaaaataaaagtgacatgAATAGGAAAACAAAGGGTCAAACTATtcttatttgcatatgacatgatccTTCACATAAAAGACCCTCTCCCccctaaacaaaaaataaaaacaccaaaagaCTCATAGAGCTAATGAACAAATACAgcaaactgaaaaaatataaaatgaa--caaagaagcCAATAATGATTCTGTACAGTATCAATGAACCAATTGAAAAAGCAGTAAG

a score=9979
s chr3            7219464 1720 + 160039680 CAGGAAGCAACA--ATTACTTTTCCTTAATATCTC----------TTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTA--CCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAAT-----AATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCA-GCACCTCATGGTACCTTCTCCAAAATTGACC----------ACATAATAGGTCACAAAT--------------------------------CAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGT-------------ATCCTATC---------AGATCACCATGCACTA-----------------------------------------AGGCTGATCTTCAATAACAAAAT------------AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAA-AATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGC--------ATTT------------------------------------------------------------------------------------------------------------------------CTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-----AGAAAAAACGG-----GAGAGAGCACATACTAGCAGCTT---------GACAACACATCTAAAAGCTCTAG--------------------------------------AAAAAAAGGAAGCAAATTCA--------------------CCCAAGAGGAGTAGA------------------------------CGGCAGGAAATAAT--------------CAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT--TCAAAG---AATTAACCAAACGAGGAGTTGGTTCTTTGA-GAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGG--ACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATC---CTGAAGAAATCCAAAACACCATCAGATCCTTCTACA-------AAAGGCTATAC----------------------------TCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAA------ACAGTCCC---ATATCCC---------CTAAAGAAATAGAAGCAG---------------------------------TTATTAAT-----------AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAA-CTCATTTTA-TGAAGCCACTATTACTCTGATACCTAAA-CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCT-----CTTATGAACATCGATG-----------------------------CAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAA
s HiC_scaffold_1 23623698 2152 - 233722169 CAGAAAACAATACCATTACTTTTTCCT----TCTCAGTCATTACTTTAAGATTAATTAGATCAAACT--------AAAGGCAGAGATtagcaaaatgaattaaaatacacACTCCAACTATATGCTATCCataaaatattcactttttatctaaagatacaaaataaacttttaaagcaAAGGGTTGAAAAGGATATTCCATGCAAACAATAACCAGAAG--AGCCAGAGTGGCTCTGTTAAGTTCAGACAAAACAGGCttttagttaaattttttt------tacaagAAATAACATTACACGTTCTTAAAAG-----AATCTTCAAGAGACATAACCA------------TATGCACATAAGACATACGCACATACAatctcaaaataca---taaaaatgtt--gaccagaaagtgag----aaaaaattCTCCAATACCTAGAGGTTTTAATATATTAACTGCAATAATGGGTAAA-CACCGAAACAGAAGATCAACAGGGAAATA-TAAGATT--TTGATATTACTGATCGACTAGACTTAATAAGCATATATAGAACACTCCACGCAATAGCATAAA-ACATCCGTACTTCTCATGCACATCAG---ACATTTTCCATGATATACcgtaatacaaaataaaatcaataataaattccctgggtttggtggcacacacctgtaattccagcactcacaagactgaagca-----ggattgttacaagttcaaggctagctgaAGCTATTGAGTGattaagatcagcctgaactacataaatgagaccctctctcaaaaaacaaaaacaaaatttaagactGCGTGACAATAATGAAATGTGAAgtcaagaaaatgaagaaaaatctataaatatgtagaaattatgcaacacact---caaacatacaatg---aaagaaatcacaaagaaagCGTGT---GACTATTTAGAGATCAATATTTAGAGAAAacacaacataccaaaacttttagaagacagcaaaaggggctggggatttagctcagcggcataagcgcctgccttgaaagcaggcagtggtgaattcgatccctggtaccgataaaaaggaaaaagacaaaaaaaaaaaaaaaaaaaatagaagacagcaaaagtagcgCTCGGATGGAAATGTATAGCTATAAATGtctgcatttaaaaagaaaatgatctccaaggtggcacatgcctgtaatcccaccactgaGACAAGAggttcacaaattcaagtcctTCCAGCCTAACTTTtcaagatcttgtctccaaataaaaaaatagggcTGGTTCAGTGATGGTTTGATACCTGatactgaggggaaaaaaaactgtAACAGCCCACTTTACACCATCGAGTGATacaaaaagatgagaaaactaaatCCAAAGTTAGAAGTGAA-TAATAAAAAttgtagcaaaaataaataaaattaaagccaAATCAATGAAACTAAAGGTTGACTCcttgaagaaaaacaacaaaactaacAAACCTTTAGATAAAATGTCTAAGAAACAAAGAGGAACAAA---TGGAtgaataaaatcagaa--taaagtGGTGATATAGCTACTAACCTCACTAAATAAA---AACAGACTATAGGCAACTACTATATAGCCTAAAGAGTTACATGTGTGCCACACCAGGCATTCTAAAAAATTCACCATCACTG----ACCTAAGT-AAATtgataaattcctaga--aacacagaTTACTTAAACAGACTTAAGAAGAAATT-ATAGTCTAACGTGTGGGAGGCCCTGTATATTCCTcaacactgcaaaagaaaaaaaattaaagatctcCACAGATCCATAACAATAAGGttgaattacaaatttaaaaaaaaaaacctccctaGAAAGAAAAGTCCAGGACCAGATGGCTTCACTGTTGAAATCtactaaacatttaaagaa---ttaacagTACTCCTGTCAAAACTCT---AataaacagaagaggaaaaaatgcttCCCAAACTCAATTCAGTGAGGCCAGAATTACCCTAATGCTAAAAACCAGATAAAGATAACACAAAAA-----AATTACAGAGCAATGTCCACATACTTGAAAAAAATGCTgaaccaaagtaaataaataaataaataaaataaaaatactgaacaaa----CAGCAAACAGAATCCAACAGCATATTTAAAGGACTATATATTTAGACTAAGTAGGTTTTATCCTAGGAATGCAAAGATAGCTCAA

a score=38914
s chr3             7219472 2507 + 160039680 AACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATC---------TACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGA-----------------TCAAG-------------------------------TTGACCTT-----CTAAACAG-----------------------------------------------------------------------------------------------------TCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAAT---AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA--TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcc-cactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaatt---------------------------------------------------------------------ggaaaagaggaag----------------------------------------------------------------------------------------------tcaaaa----------------------------------------------tatcactt-----------------------------------------------------------------------------------------------------------tttgcagatgatatgata--gtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctca-tggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaatt
s HiC_scaffold_1 107289698 2711 - 233722169 aataaatatctatcagttataaccatcaatgtgaatggtctcaattcaccaatcaaaagaaacaaattggcaaaatggatcaagaaacaagatccaacaagatgctgcatataagaaacatatttaattcaaaaataaattaatagactgaaagccaaaggatgaaaaacaatactcacTATGACTAGAACCTGGAAAAAAGTATGGTTAGCTAtcttatttgcagacaaagtggatttcaagccaagatttaTCAGAAGAGACAAATAATGTCCCTACGTACTTGTtaagagaacaatcc---aagaggaat-----------aatat--atgcaccaaatattggCACATCCAACTACATAAAAGTAACActaatatatatgaaatgttaGATAAGTAATAATGTAACTGTAATAAGGGACCTCAATACTTCACTGCCACAAAtgaacagatcaactagacaaaaa---aatcaagaaatatcagagctgaaccaaacctttgaacaagtGGGCTTAGTAAATATCAGCTATAACCATTGAGTTTTCTACCCCACatcaacagaatacacattcttctaagcagcACAT----------CCACAACAGATGACCTAATAGCTCAAGGAC---------------------ATAGTTAAGTAG----------------------------AATAAGTCTTAGACTTGTGAACAAATTATATTCTGGGAG---AACGTT----TGTAAGTTGAA--------TTCATTATTAAGTCT-GTTGAAGTGAGTATTACACAAA----------------------Ttgacacaaata----cacaatgtat------------------------------------------------------ATTGATTTC-------------------CGCTCCCTAGGAGC-------CACAGTCCACATCTCCAGTGC-------------TTTTCTCAAAAGTTGTCAA-GACagcaaatgataaagatcagagcagaaatcaagatgatcaagacaaaaaaaattaatcaaaga-----------------ttggttctttgaaagatt----aagtaaaataaactctTGGCCAACTTTACCAA----CACCAATA-AAGACTCAAATCTGTGCaattagaaatacaaatggtaa-atcaCAATAGATTCCGCAGAAttccagaagatcatcagtacttACTTTAGGAAACTGCACT--ACGA---TGGAAAacttagaagaaatggacatattcctagacacatataaaTTACCATAGCTGaactaagaagatataaaagttttGTCTaaggccataccaccctgaacgtgcCCCATCTCGTCTGAtcttggaagctaagcagggtcgggcctggttagtacttggatgggagattGCATGGGAATACCGAGTGCtgtaggcttaaaaaaaaaaaaaaaaaagaagatataaaagttttaaatattcaatATCCACCAATGAAATTGaattagtaatttttttaaaactaccaacaaagaataGTCCAGACCTTGacagatttactgctgaattctataagaaatttagaaaaggacTAATGGCACTCTTCATGAAGctttttcatgaaattgaaagggaagcaatactcccaaactcattcctggaagtaagcattagcctgataccaaaaccagag---gagccAACCAAAAAAAGACAACCACAGCTCaacctctttaatgaacatagattcaaaaatctTCACTATTACCTTGGCAAGTAGAATGCAGgaaattgtcaagaagattacacaccatggtCAAGTAGGATTTAAGCAAGGGAAGTAGGGATGGTTTAGCATACACAGATCACTAAATGTATTATACCACATTAACATAATTAAGCACAAAAACCACATGACTAtttcaatggatgcagaaaaagcatttgtcaAGGCCTAACacacattcatgatttaaaacccctaaagaaaatagcaattt--------tatctcaatctcataaaagtcatttataataaaccaatagccaacatcatgctaaatg--gtcaAACTGAAAGTTTTTCACTCTAAACTCAGGAGCAAGA-AAGAACACCCTCT---------CATATTCaatatagatctagaaaaatttGCCAGACTAGttagacaacagaaaaaaacaaaaggaatatgAACTGGCACACAGACTGAGGAAACTAGGAAGGAAGCTATGCCTCTGCCTGTAAGTCAGCCTGCATGCTGATTGGGGAGAGAAGAAGAACACCCCAACCCCTGTAaacaaccagctgattcagaggaactgcattatttgattgactttgcaaacctaaaaccagtagtctgagtgagtatttaaaagataaaaatatgcaatgtagTAACTATtatagatttcctactgtcttatcactttactgctttgttttatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcaaaaagaatatggataggaaagaaagaagttaaattattatttgctgatAACATAATCCTCTACATATAGGAGAtgccaaaa------------gactcctagaattaataatcaaattccatATCATAccaagatacaaagtcaactctcaaaaatctatagcattcctgtacataaatatcaaactcactaagagaaaaattagggaaatgacgtctttcacagtagcattaaaaaaaaagaaatatgtaggAATTCACCAAactaaggaaatgaaagacctttaaatggaaaactatagtactct---aaaaaagataaaaaaagacattaaaaaat-gaaacatatccTCTGTTCCTTGAataagcagaaccaatatagtgaaaataaccatattcccaaaattgttatacagatttaatgcaatcccaatcaaaatatcaacagcatacctcacagaatt

a score=51587
s chr3             7219489 2500 + 160039680 AATATCTCTTAACATCAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGC-TTACAGGAAACTCATCTCAGAGAA----AAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCA--AATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAA-TAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA-----TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAA--GCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTT-------TAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGC--TTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAAC--TATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC-TAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAA-AGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta--actcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagca
s HiC_scaffold_1 121915927 2387 - 233722169 AATATATCTCGG--TTAACAATCTAAATGctccaattaaaagaca--gatTGGAAGACTAGGT-CAAACACATAATTGAAAGGTctgctgcattaaaaaaaa---atgtcatgtaATCCAAAAGATACATATAgactaaaaatta---tttcaaaaactgTATTTCAAGAACTAAGACCATGAA--AGCAAGCAGTAGCAGCAATTATAATACCAGATATAATAAACTTCAAGCTAACACATGGTAGAAGAGACGAAGAAGGAAACTACATTCTAGTTAAGGG-aaaatccaagaagaagagatattGAT---AAATATAAACGCTCTAAATATGGGAATGCCTGTGTTTATTAAACAACAACTGCTGAAATTAAAActtcaaataaacactaacacagtGAGTATATGGGGATTTTAACTCCCAGCATTC-CAAAGagatataacaaataaacataaaataaa-----------------taacagagcTGAAACACTCGAACAGTTGGAATTAACAGTTATATACAGAGCATTCCTTCCCCCTATAGCAGAGTATGCATTTTTTTCAGCAACTCACGGTACTTTTGTCAAAGTAGATCACAGACTATTCCACCAAGcctaattaaataaatataaatgtactgCAGTTA-CCCATGTATTTCATTCGAACACTGTGCAAGaaagtaga-aatcaatgacagaagAAATGGTGGAAAAGGCAAAAGTT--CCTGGAAAAGTAATAATAtactcctaaacaaccagtggtTCACAGAAGAtatcaaaaaagaattt------ttttagaaatatggaagttaatgaaattgattgtacaagtaaacaaaacctTTGGGACACTATCATAGCTGTTCTGATTGGAAAGTT--TTGCAATTAAtactcacattagaaaaacagaggaaatcCAAGCAAACAcctttttttaagaaatcttaagATACTTGACAAATAACAAgctaa--------------------ggaaagaaattataaaagtaagaGTGGAAATTAA-TACTTTGAGACcaaaataacaatatgaaataagtCAGCAAagcaaagagctggttcttcaaaagactaaataaaatggACAAGCTCTTAGCAAAAcgtactaaaag----aaagaaaagattcacatAAATGCAATTAGAAACCACAAatatgaaatcacaacagatactACCAAAACCCAAAAGA----TAGAAACTATTTTGGAAAGTTATATTCtaacaaattagaaaattttaaagaaatggagagataGCAGAGCACATGCAAACTGCCAAAACT-AGCCAAGAAGATATGAATATACTTAACGATCCAAT-----CACAAGcaata-aaatattcagtaataaTCTACCAACT--AAAAAGCCTAGTACTTATTGGATTTACAACTGAATTCTAT--GAATTTCTAAGGATATTATATTATCAATACTCCTCAAggtattaaaagaaatttaa--agaatggAGTGCTCCCAAAGTAATTTATGGAAATCACTATATTCCTGATCCCAAAACTAGATAAAAATGTAGCGGGAGAAGGGAACTATTGACTAGTCtcttaaatgaacaaaaatgccCAAATTCTCAATAAcacattggaaaataaaatgtagtatatTATCAAAAGCCtaatataccatgatcaagtgtgTTCCATTCCAGAGATGTAAGAATGGTACAATAGATGTAAGCCTATAAATGTAATAGATcatattta-aaaagcaaggtaaaaaaccacatgatcatatcaatagatgtag-aaaggcttttgacaaaat-cATCACtacttcatgataaaaatccttgaataaaataagtatagGAAGATTATACCTGGATATGATAAAAGCTACCTATAACACGGCAATagccagtattatactaaatggggAAAACCTAAAAGCATTTCGcctaaaatcagaaagaagataAGGATGCTCAGTATCACTTTTTCTAGGCAACATAGTA-TTGAAATATTAGCCCAAACAGTCaaacaagagaaacaaatgaaagagatacaTATAGAAAga---gaactcaaattatcattgATTGTAGATGACATGATGCCCTATACAGAAGACCTAAGTAACTCCACTAAA---------------------AACTTCAGCAACATACCAAATCATAAGATCAGTACTCAAAAAA--TATTAGGATTTATGTATGCTACTAATTAAC-----------------------TCAATACAATTCACAGTAGATTCAATATAAATGAAATAGCTAGGATTTAACTTAACCAAAGCAGTGAAGGACCAATA-AAAGATAATTCCAATGCTCTGTAAAAGGAAATTGATAacaatatcagaaaatagaatgatATCTCCTGCTCCCTGCTAGATAAAACCAATATTTTCAAGACGatcatactctcaaaa-ctgttatcagattcaatgcagtcccaatcaaaattaCTACAACATACTTTACAGAACAGGGAAGAATA

a score=85053
s chr3             7219512 3702 + 160039680 TCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAA--CTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG----TATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTC-CAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCT-TCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC---ATCTAAAAGCTCTAGAAAA---AAAGGAAGC--------AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA---GTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattc--------caccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttact-------acagagcaattgtgataaaaactgcatggtactggtatagaga----cagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattg--------------------gggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcaga-----aaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaag--------ccccaac-tggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtgg---tacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagca
s HiC_scaffold_1 112386594 3622 - 233722169 tcaattcaccaatcaaaagacacaggctggcagaatggatcaagaagcaagagtcaacaatatgctatatataaaaaaaacacatttaattcaaaaagaaattca-tagttaaatgtcaaaggatggaataaaacactccatgtgacaggaacctggaaaaaaaaaaacaggagaatcAACTCTATTTggagacaaagtgaatttcatggTGAGGGTGATTAagagggataaagaaggtcactacatccttgtaaagggaatattccaagaaaaagagatgataatcataaa-atatatgcactcaactacatga----------------aacaaatattaatggacatgaaaaatcaaaaaagcactAATATAATTGTACTGTGGGATctcaatacctcactgtcacaaaaagatcaatta--gaaa---aaaatcaacaatgaaataatagaattgaactaagcttttgaacaaatggatttagtaaatGCCTACAGAG-----TGCCCCcctacatcagaatatacatttttctcagttgaACACAGTATGGTTTACAGACTAAACCCCATACTAGTTCAGAGAAcatgattaaataaatgcaaaggaattaaaatt-----atgcaTGTGATCagaccatagtacaatgaaattgaaaaattagTGGCAAATGAGATCAGAACAACTTCAGAAGcagatggaaattaaataacaccttgcTAAACAACccataggtcacagatgaaattaaaaaggagattaGACAGTCTCTACAATTAAGTGAG--TGCTGATAAAACATACT----------AGACACAATGGAACCATCCCCAAGAAGGAAATTGATAGTCACGAATACCTATCTCAGAAAAATTGAGTGAACTCAAATAAGCAACTACTCAATGTTgaacttcaagcttctagaaaaggaagagcaggcCAAGTTcaaagctcatacaagaga------------gaaattatgaggATCAAAACAGAAactaatgcaatggagactaagaaaacaatgcaaacaatcaatgaattgaagagttggttgtttacaagattaaataaaattgacacacccgtagccaaccttatcagaaaaaggaaagacaagactCATATCCATGTAGTTGGAATAAAAAGGTCAAAAATCACAATGGACTCTTCataaattcagaagatcat--gtaTATCACATTGAAAGTTGTACTATAGTAAGATGGAAAgtgcagaagaaatggatataTTCCTAGATTtatgtgaattaccaaaactgaagcaagaagatataaaaatcctaaataagccaatatcaatcaatgaaatcaaagatgtgaTTAAAAGcctgccaacaaagaaaatcc--agccCTGGTTAAtttattgctgaattctacaggaaatttagagaaggtaTAACaccactactcctcaaactctttaatgaaattgaaagggaagcaatattcccaagtttgttcctggaaacaagcattactctgatattcaaaccagagaaagacccaaacaaaaaagagatctacaggccaatctctctaccAAATATAGATGGAAAAATTCTTAGTAAGATGCTAGCAAacataatacagaaaataatcaag---attatacaccatgagcaagtAGAATTCTTCCCAGTGATGCAAGAATGtatcaacatacacaaatcaataaatttaacatGCCATATTAATAGAACCAAGGTCAAAAAGCATATGCTCATCTCAATAGGTACGCAAAAAGTTTTTGACAAATTCCAGCA-CCACTTATGATAAAATCCTTACTGAAAAAATTA-GAATAgctggtctttatctcaatctgataaaagccatctata-caAATCAACACCCAATATCATTCTGACTAGATAAAACCAGAAAGCTTTCAATTTAAATTTAGGGACAAGACAAAGATGTGCACTGCAACCCCTCTTATCCAGTATAGTTCTAGAAACTTTACCCAGAGGAATTAGagccaagaaagaaataaaaggaataaggataagaaaggaagaagttaaatcggCATTATTCATGAGTGATCTGATGCTTTCCATAGCAGACCCTAAAGACTCTTAGATTTctccaaaagacttttagatttacTAACCAATTTCTTTGgcatggctggatacaaagtcaacaataaaaaatcaatagcctttctgTACATTAATAACAAACTCaccaaaagagaaattagggCAACAAAAGttctcacaatagcatccaaaaaagttaaatacataggaatcaaactaacaaaggaagtagaagacctctacattgaaaactacagtactctgaaaaaagagaacgAAGAGAGTATCAGGAAAGGGAAAGATATCC------CTTGGGTTGGAagaactaatatagtgaaaatgtccatact-----------tcCACAATTATCATGCGatttcaatcaaaattccaacagcatatctcatagaactagagaaaacaaccctaaagttcatttggagccagaaaaaacctagaatagcaatggtaattctgggaaacaaaggcaaaacagaGGGCACCACAATCCCAGAATTGAAATTATGCTCAAATTCACAGTGCTACC---ATAAAAAGAGcatgtaacagaaaaaaaaaaaatcagacctgagaatcagtgaaataggttggaagatggagaaacaaatccata-----------------------acaaaggggccaaacatgttctctggaagaa----aacctcttttaaaaatagtgatgcaaaaattggctttctacatgccaaggattaaaattaaatccata--------------------------tgaaatggatcaaagatctaaatatttagaCAGAAAAGATTAAATCTGTTG-GGAGATACAATACACTATACTACACTACACTacaaaactcttgaaaacat-tatgcagccaaagattttatgaacaaaatcctgatcaCATGGGAActgttacaaagaatcaacaactgagatataattttattaaaaacgttttgcacagcaaaagaaaccaccagaagagtgaagagacaagtcacagtagggaaaaatattttt-ccagctcTTCCTAAGACAAAGAACtactctctaaaatatataaagaactaaaacaacAGAAACCGAAATTCCCAAgtgtaaagacccaatccaaaaatgagcacctaaaatgaatata-cattctcagatgaagaaatacacacagcaaataaatacataaaaaaat-ttcaatatcacttgttattcaagagatgcaacttaaaacaatgctaaaattccatctcatcccagaaagcatggttattattaagaaatca---acaaattaaTCATGGCAGGGATGTGGGGAAC-AGAAACTCTTTTCCAGTGTtagtgggggtgtagactggtgcaaccattgtggaagtcagtgtggataTTCTTCAAAAACTGGGACTGTTCATTTCCTTC-AACCCTACTATTTCTCTTCTTGGTACCTTcctgaaagaagtaaaagtacCACATCACAGCAATAGAtatacattc------atgtttatagtgacacagtttgtaatagc--agtcttggaaacagtccaaatgttCCTCAACTGGTGAGTGaata---aagatgtggttttttttttatgcaatggagtactattctgccagaAAGAAGGCTAAGTTCAAGAAATTTCTAGGCAAACAGGTGCACCTTGAgatca

a score=11543
s chr3            7219522 779 + 160039680 AATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACAC---ACCACTTTCACCAATGGACAGATCATGGAAAC---------AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT-TTTTAGAGTTTAATGAAAATGAAG
s HiC_scaffold_1 66390200 718 - 233722169 aaaaaaaaaagacagac-aacagAGTGGATTAAAAAACAAGACTCAACTCTTT------TGCAAGAAATGTACCTCACTAGCAAAGA----------CTAAAAACGAATGGGCAAAGAACAATATTACATGCAAATGAAACCTGACTGCAATCAGGAGTA-CTAAACTCATATCTGACAAAGGAAGCTTCAAAACAACATTAGTCAGATAAG-CAA------ACACTATATACTGATAAATGGAACAGtcc--------------------ataaatatatgtgcaccaaacatTACTGCCCttgatttcataaaacaaatactactcAACAGAAAGAGACATAAAGGTCCCAATACTGTAATAGTGGTTGAGTTCAATATTAAGATGATCCTACCAATAGATAAGCCATCCagaccacccccccaaaaaatcaacaaagatacCTCAGAATTAAAGTACACCATAGACCAAACGGACTTAACAGGCGTATATGGAACATTCCATCTGACAATTGTGGAATACTTATTCTGCTCAGAAGTTCATGGACTGTTCTCCAAAATAGGTAATAGCTTAGATGATAAAGCAAGCCTCAGCAAATACAAACA---GGAAAGAATTTCTTATACATTATCAGcttataatggaatgaaactagaaatccaGGGCAAAG-AAATCATAGAAA--CTACAT--------AAAcagaataa--------tcagtg-------ggtcactgaAGAAATGAGGTAGAGGCTAAAAGAATAATTCacaaggtaaaaaaaataaag

a score=17103
s chr3            7219542 1034 + 160039680 CAAACTGGCTACACAAACA--AGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGG-GAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGC--AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT------TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG
s HiC_scaffold_1 29924627  969 - 233722169 CAGAATGGATTCAAAAGTATGAAATTCAACTATATTTTACCTATTGGAGACATACCTCATCCAAAATAAGAAGGATGGAAA-----TGAAAATTagaggatgaaaaacagtattt-----gaCTAGAGCCCGAAAACAAGCAG--------ACCTCAA-----GACACAGatgacttcaagccaaaactgatcagaagagacaaaaacgAGCACTTCAGATT--GtgaagaaacaattcaacaggaagagatagcA--TTAGAATGCTTATGATTGTTGCACATCagc-------tttataaaacaaaaact--cagatTTAAAAGGACAGATAGC-CACAACACAGTCATAGTAGTGGAACCTTGGTGCCCATCTTTTTCAATTAGATAGGTCAGCCAGACCAAAAAATCAACCAAGAAACATCAGAGTTAAAccacacctttgaacaaatggacttaata---ctCTAT-GCACGTTTCATCCAACAATAAtagaacacacatttttctcagcagaacatgaaactttttccaaaatagagcATATCTTAGGCCATAaagcatgtttaaataaatgtagaagAACTAAAACAATCCCTTGCATACTATCAG-TTAAGAAGTAGAAAG--tagaaatcaacagcagaaaaagcCACAGAAACTATACAAACACCTGGAgattaaatattacattattgaataatcagtggatcatagaagaaattaggaaagtaat-aaaaaattcgTAGAATCAAATGACAGTGGACAGAAAACATACCAAAACTCATGGGACACAATGAAGGCAGTTCTAAGAGAGAAGTTTATAGCTGTAAAAGCATATGTTAAAAAAAgagtgattctaaatac------cctaatGATAC-------AGCTCAAGAACAATGAAAAGCTgaaactaacagaaaaaaattaga---------------aagagcagagaaaacatcaatgaaattgagactaaaagtAATATAGATGCTCagtgaatca----------gagttggttctttgaaaggctGGAAAAG

a score=53810
s chr3             7219552 2175 + 160039680 ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCACCAA-TGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG----AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC-----ACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTC-----TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaa-aatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 105839773 2141 - 233722169 acagaaacaagatccaacaatatgctgcatacaagaaatacgTTTAACTTGGAAAGATATTCATACATTAAAAGTCAAATGgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatttgcagtcCAAGTGGA-TTCAAGTCAAAACTGGTCAAGCCA--CAAAGAAGGTCACCCTGTACTTggaaagggaacaatccaagaggaagagataacaatcataaatatgtatgcccCCAGGTCCAGAACAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTGCTGCCACAAAATgggcagatcaactagaca---acaaatcagaaaaa-----gaacTGAGTCAAACTTTTGAACACACGGACTTAGTAGTTGTCTACAGAGTGTTCGGCCccaccacatcagaatacacattcttctccaaCCTTCAAGTCATGTTTTCCAAAATAACCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaaggaactgaaatcatcccatgcatattaGCAGACCCTAATGCAATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAAAGTCC-TATGAATatggaaatcaaataaaatccttctgaacaaccaatggatcacagataaaattaaagaacaaattagaaaGTTTCTACAACTAAACAATAATTCCAATACAAAATACCA------------------GAAAGCAGTCCAATGAGGGAAATTTAgagcagtgaattcccatataACAAATGCAGAGTGAACTCCAATCAACACCTTAATGTTGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagtttgTACTAGAGGGGAAGGGATAA---AGAGcacagtagaaattaatgcagtggagactaagaaaaccatacagagaatgaatgaattaaagagGTAGTTCttgga-agatgaaataaaactgACAACCTCTTAGCCAAcattataaaaagttttaaaaaggaaacaaagtcttagatccatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattctaacaagatggcAAACACAGAagtaatggacagattcctacagTCATATGAATTGCCACAGaggaatcaagaagatgtaaaaattctaaatgacccaatgtcagtcaatgaaattgaagatatgaTTGAAAATCCACCaataaagaaaagtccaggtcctgaccAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGACCTACCTAATGCTGCCACTCCTCAAACTCT-------AGTGAAGTTGAAAGGTAATCAGTACTCCCTaagtcatccctggaagcaagcattac-ctgataccaaaactggagaaggagCCAATCAAAAACAGAGAACTGGAAGCCAGTCTACCTAATGAGCATATACACAAAAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACcaggtaggattcatcccagggatgcagggagggCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAATCAAGGATAAAAACCACTTGATCGCCTCAATAAGCCCAGAAAAGTAGTCAGACAAACGCCAACACCCATTCAAGAGAAAAACTTTACAGAATACCCAACTAGATTGTCTTTAACCCAACCtgaaaaaagccatctatgacaaaccaacaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACCAGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaaa-aagaaaaagaaaa---------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGACatctagaattaataatcaatttTAGTAGCATAGCTGGGTATGATgtcaacactcaaatatcaatagcatgcCTGTACAAAAGtaacaaactcagtgagagagaaattaaggaaac

a score=52962
s chr3           7219556 3439 + 160039680 [encoded data, 4367 characters]
s HiC_scaffold_1 6285540 4126 - 233722169 [encoded data, 4367 characters]

a score=51073
s chr3             7219604 3319 + 160039680 AAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACC--------------CAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACT-TTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTG--ATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATT----CACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCC-------TTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGT-TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAAT--AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACA-AGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAAT-TTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA----------------------------------------------ACCAC------------------ATGATC----------------------------------------------------------------------------------------------------------ATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTC-ATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaa-attaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacc-cttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaa--cttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacc---tctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatgg---tactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacagggga-aaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatgg--ggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctc-cattgttggtgggattgcaggcttgtacaaccactctgga
s HiC_scaffold_1 202321554 3159 - 233722169 aaagacatACA--GACTGAAATGGAAAGTAttggaaattatatttcaaaCAAATGG----AAATCTAAAGCAGAAGTA----TACCTATATCTTATGAAGCAGACTTTAAGACAAAAACTATTAAGACAAAGTCATATATAAAGATCAAG-GGATCAGTTCA--------ACAGGTAGAT-------AGATGA--------TTGTAAATCTAGATGCATCTTATGTTGGAG-AACCTAATTTA-TAAGCAAACACTGCTAGatctaaagggaaaaatagattcTAATATAATAATAGCAGAGGACTTCAACATCCTACTCTTGATCAGTGGGCAGATCATTCTGACAAAAA-------GGGcaataaaacagttaaaaaaatttttatagattaaaTGAATTTAACAGATACTTGCAGAACATTTCATCCAACAGCTGAACAATATACGTTCTTTTCATCAGTGCACTGAACTTTCTCT-AGATAG---ACATACT-GTCCATAAAACAGGgcttgacaaaataaaaaa-attgaaataatatccTGTATCTTTTCTAATCACAATG---GAAG--------TCAATAACCAAAGA------AGATTGTACAAATTATGATACATGAACACTGAATAAATTTTGAACAAACAATA-------CAACAATGAAatcaaatgtgaaatttaaaaatatgtcaa----aatgaagatgaaaacaCAATATGCCCAAACTTATGgaatacaataaaaacaatactagTAGGGAAGTGTTTGGCAGTAAGtgcctatattttttaaaaataaat-------------ttcaaatgaacCAGTAATGTATCTCAAGGATTTTGAAGGCAAGAAg--aaagtca---aaagagaaaaaaagaaagactagaacaaaaataaatagggactttaa--------aagtataaattactAATGAAACAGTTG--------------TGGTTTGTTTGAAATATAAACA------ACCAACTTTTAACTGAACTAATCGGAAAA-AAAGAGGTAAgatccaaataaataaaaccacagtTGAAAAGGGAGAGATTAAGACAAATcctacagaaatacaaagaattactAGGGATTTTTATTGAA----------AACCAAATTGGAAAAgctaatagaaatagaaaattttctggACATGTGAAACCTACCAAAAATGAAAGATGAGGACGTACAAAATCTTGAACCAGCCAATAACAAGTAATGAAATGGAATCAGTAACAAAGTAAGACTTATAGC----AAAAACTCAGACCTAAATGGCTTCACTAATGAATTTTACCAAACTTTTAAAGAA---CTAATGCCAGTTCCCCTCAAAAATTTCCAGACACACTAAAATGGAGGGAACCCTTccaaactcattcttggaggccaAGATTACCCTGtta--------aaaaacagagcaaacaaag--agaaaactgtACTCCAGTATTGCCTGGtaaacacagaggcaaaaattctCCAAATA-------CCAATCAAATTTCATAGCACATTAAAAATACCATTCACCATGATCAAGTTtgtttcatcccaggaatgcaagaatggcTTAATGTATAGAAATCAGTAATCATAATACATGGCATCAACAGAATGAGTGGTAAAAGATCATGATAccttagccaggcgtggtggctcatgcctgtaatcccaccactcaggaggctgaggtgggaggatcgttatGAGttagagaccaacctgggctacaaggtgagctcaaggccagtctgaactgcatagcgagaccccatctcaaaaaagaaaaaatttttaaaaattatggtacCTCTATTGACACAGAGAAAACACCTGATGAACTTCAACATTCCCTCAATGATAAAAGCTCCAAACAAATTGGGCATACAGGGACTGTACTTCAGCATACTAAAGAACATGTGTGACTCAC----AGACAACATCATACTGAGTGGGAGAAAGCTGGAAGCATTTCCTCTAAGatcaagacaaagacaaaa-tatcTAAGCTCACtgttcttattcaatatagtactagcacttttagccagagcaattatgtgaaggaaagaaataaaagacataaatatt--atgGGAGGAAG------TACAACAGTTTGTAGATGATTC-----TACATATAGAAAAACCTATAG-----ACCAACAGCCTATTAGAGCTGATA-----------TTTAGTACCAAGACACAAatatcaacatataaaaatcattagttt--------atacagattaaattttctg----agaaatcagGAAAGCAATTCTACATTAAAATagctataaaagaataaaaatacttagaaa------taagcAGGGAAGTTTAATCCCtctataattaaaagtttttaaaatactgatgaaata--------aaaacacaaaaagatggAAGGACCTTCCAAGTTTAtgaccagaaaaaa--aatgttgttttaaatGTCCATATTACCCAATATGATCtatacatttaatgcaatcccagtcaaaatgcTAATGAAATGcttcatagaactagaaaaaac--------aattcatgtGGAAGCTCAAAATACCCAGAATACAAAAATCT----TGAAGTGCAAAAGGGACAAAGCTGGAGGTAtcacaataccagatttcaaaaCATACAACAGAGCCATGGTGAC-CAAACCAAACGGTTTTaatggcataaaaacagacatataaa-CAATGGAAGAGGATAGAGAACTCTGCAATCAAACCACACAACTACAATCAACTGATTCTTGACCAACACACTAAAAATTTACTGGGAACAAAAGACAGCAAT--------------------------------------------------------------------------TACTAAAAGAAAACCTAG------------------------------------GAAACATTTGAAGGAAACA------------CTTTAAGATGTTGGTACAAGCAATAAAGTTCTGGGACAGGACC-CAACAGCACAGGAAGTGAAATCAAACATTTACCTTTCTCa-ttacacaaatttaaaaacttctgaaTAGCAAAGGAAACGAACA--GAATCAAAAaaataacctacagaatgggaggaAACAGTTGCCAATTGTTCACCTCA----Gggttaatattcaga--atataatGAACTTAAAAACTT-----TTTGACAGTCAAGCAGCCCAGTTAAAAACAGGCAAGTT---GTTTGAATAgatatttcacaaaagaaaaata-caagtggccaacaagtatatgaaaaaatgctaaaTATAATTAACCATCAGAGAAATGTAAACCAAATATAC---AAGATACTGTCTTACCCCAGttagaatgactattatcaaaaa-taaaaaaatagtgacTCTtgatgaggatgtggagaaaaatgaATTCTTGGCACATTGCTGATGTGAATGTATATTAGTACAATTATCATGGA

a score=28740
s chr3             7219626 1582 + 160039680 TGAAAGGCTGGAAAACAA-----TTTTCCAAGCAAATGGTATGAAGAAACAAGCAG---GAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTC--ACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTC--------ACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATA--AATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAG-ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG---AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACAT--AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG-ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCA----GCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTA--TGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAAT
s HiC_scaffold_1 181954364 1522 - 233722169 TAAAgggctggaaaaagaaaagatacactaCACAAGTGGAAACTAAAAGCCAGCAGCAGGAAGAGCTAACCTCATAGCAGGTAAGGCAGACTTcaagt--aaaacatttaaatgagACA--GAGGGTTACCGTAGACTGATAACATTATCAATGCACCAAGAAGATAGAACAATTTT----ATATATGTGCCAACCACAGGGCCACCCAAATATG-TAAGCAAATATGAG---AtctaaaaagagacagagagaccccAAAACAGTAATTGTTGAGGACTCCAGTGC-CCACTTCCTGTAATGAACAGAtcatccagacagaaaatcaacaaagaaacatctGTGTTGAATCACACTGTAGAATAAATGGACCTAACAGACATCTGCAGAACATTTTATCCAACAGCAGCAGAGTATACATTCTCATCAGCA---CGTGGAACATTCTAAAAGATAGATCATA-AATAGAACTTTAATAAAAACACCAAGTCTCAATAAACGTGAAAAAACTGAAGTGCTATCATGTAACTTGTTAGATCA-CATGGA--AA----------CAACTACAAATTCCTAGTAATTGAAAGTACGAATAcgtatggaaattgaataaca-tgtTCTATATGACCTATGgataatttaagaaattaa-----aaattgaagaaatctctggaaagaaatgaaaatgtcagCATAACGTATCAAAACCTGTAGAACACAGCTAAAGCTGTACTGAGAGGAAAATTGGAAGCAGTAAAATCATTCATTATGAAA---AAAAGGTCTTAAATAAACAACCTTACAGAGCACCTGAAGGATTTAGAAAAGTACAAACCAGAAGTA--CAAAAGGATTAATAGAGGGAAGGTAATAATGAAGATCAAGGCAGAGATATAtgaaatcaaaactaaaaacaatg---aaaagatcaGTGGTACAGAGTTGTTGGT------AAAGGATGagcaaaatagataaata--tagcTAGACT-GCTagccaagttaaaaaaaagatacaagt----aaAACCAGATATAAAAAGGGAGACTCTAAATGATGGTTAGCACAGAAG---ACAAAGTCATAAGAACCTACTATAAAAAATTATGTGCTTAAATACTGGATAACCTGGCAGAACTGGCTAAATTCCTCAGTACATGCAACCTGTCAAAACtcaattaaataacaa----aaaatgtaaacaaatgaaCAGTCTGTAATGAGAT---------------TAGTccctcacattaaaaaaaaaagtttagaaactGCTGGTATTATTGCtaaattctaaaatatgttt----AAGAATTAATCCAAGTTCTTCTAAAACCcttctaaataaatgaaatggaagGAATTCTGCCAACTTCTTTTTATGAGGCCAACATTGTCCTTCcaccaaaaccaaacaatgatAAGACAA----GGAGGACTGTGGGGCTATATCTCCCCGTGGGCCACAGAGGCAGAAATTATCAACAAAAT----ACTAACAAACTCCAATAGCTCAT---GGAAAACATACATCATAATGAAGTGCAATTCATCCCAGAGAGACATGGAtggtttaaaatatgcaaatcaataaatgtaat

a score=16141
s chr3             7219667 918 + 160039680 AAACAAGCAGGAGTAG-CCATCCTAATAT-CTGATAAGATTGACTTCCAACCCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACT--TTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA----------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACAT-------------AATAGGTCACAAATCAGGC---CTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA
s HiC_scaffold_1 167009644 906 - 233722169 AAACAAGCAAGAGTAGGCTATCTTGTTTTTCAGATACAGCAAACTTTAAGCcagaactgatcagaagagatcAAGATGGCCATTACCTACTGGTAAAGGGAACAACTCAACAGGAAGacttaacaattttaaatatctatgcatTGAATGCTGGTACACCTAATTGCATAACACAAAAACTACTGGACTTAAAAAGACAGATGG------ACACAATACAAG-----GACTTCAGTGAGATACTAGCTCACAATGATATAGGTCACCTAAGcaaaaagtcaagaagagtcaa--gaaagaaatattagtCAAACTATACCACTGAACAAACTGGTTTAACAGATATCTACAG--TGTTTCATCAAATgacaacaaaataca--tttttctcaatAGTTCATGGAAAATTTCTCATAATAAACCATGTTTTGGCCATGGTTAATAGACCATGTTTTAGGTATgctcta-aaatacaaaaa-attgaaacaatccCCTGCATACTATTAGATCATAAC-----AAAGCTAGAAATCAACATCCTAATAAGCCACAGAAACTACACAAACATAGATAGACTAAATGATATGTTATTGGATAATCAGTggatcagagaagaaataagcTAATAAA----AAAGTTCCTGGAATCAAATGACAATGGAATAACAATACACCCAAGTCTATGAAACACAATGAGAGCAGTTCTAAGAGTGAGGGTATTGACTATACCTGCACACATATAAAGAATAGAATGattccaaataaataacttaGTGATGTACCTCAAGTTCCAAGAAagacaagaacaatccaaatctaaaattaataga----aagaaattataaagatcagagtggaaattaa-----tgagattaggaaaaa-----aaaagaatcaatgaatcccagatttggttctttgaaaggatggGGAAGGGGTATAAA

a score=32268
s chr3             7219672 2964 + 160039680 AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAACCCAAAGTCAT----CAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGG-------TAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGT-----AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAA-------CAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAG-TGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC----CCTTAGCTAGACT-----CACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAG---------AAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA--CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCG---CTAACCGAATCCAAGAACACATTAAAGC---AATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAAT--TCAAGGCCAat---acctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatg-atagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaa--gtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagt-------cacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagat-ctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgcc--aaaagcaatctacagattcaatgcaatccccattaaaat-tccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaact-gcatggtactggtatagagaca--gacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccag-----tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagc-cttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacact----------gtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatcc-aacatatataaagaactcaagaa
s HiC_scaffold_1 175426033 2584 - 233722169 AGCAGGAGTGGCTATACTGATAACTACCAAA---------TAGGCAAAAGGCATGGGAAGGAAGAGACAACTATAGCTACTATAAAATGATTAAGAGATTAATTCAATATTgacaaaaaggaa--------tataaaactgCATGTGCCTAATGTTTCACCATCCAGATTTACAAAGCAAACACTATTGGGCTAAAG---AGAGAGCACAATGT-CCCAACACAGTAACAATGGATGACTTTCACATGCCACTTTCATCAATGAACACGTCATGCAAACC--------------ACAAAGAGCAACAAACATCAGAGATAAACTGTACATCAAATGGATCTAAAGTGTA---ACAGAACATTTCATCCAACAGCTACAAAGCACACATTATTTTCATGAGGACATGGAACTATCTCTAATAGTA-------TATTGGTCACAAAACAAGCTT--AAAGAGTCAAAA--ATTGAAATCATATCCTGTTTTCT----GATCAC--------GAAGAGGAACTTC---------ATAAATTACACAAA---------TATGTGGAGACTAAGTGACATACTT-TTAATGGTGACAT-ATCaagttaaga----------aattttaaaaattgttaaaa-caaATGAGAATGGAA--ATAACATATCAAAGTTTATG----ACAACAAAAGGAGTACAAAGGGGAGTTTTCATAGCAGCAAGCTACCtacattaaaa--------------------agtaattt--caaatAATCGAGAACttagacaaataaa----------------aacaacagtagaatgaaaaaattaacaaatattaagtataaaac-------------actaaaataat--------gTATTgatca------gagttttttttttg----aaccagtaAAATTCTCAAACATTTACTTAACAAaactttaaacaataaaaaagatggaaaca--------------aaaatcagaggtgaaaaaggtgaaa-aaaaattaatactacACAAATACCAAAGATTCTTAGTGACTAGTAAGAAAAACTGCATGCTAACTAactgaaaaactt-------------aaatttctgGGTATATTCGATTTACACACATTGAACCATAAGAACATGAAAAACCTCACTAGCCCAATAAAATGTTGTGAGATTGAATCTGTAATATACAGTCTTCCGG-CAAAGAAAGTCCAGAAACGGCTaacttcactgctgaattttatcaaACTTTTATAGGCGGCATAATACAAGAGCTTCTCAACCTATTCCAAAGAACTAaaggggacaaaaaaaaaaaaacctttcataaCTCACTCTGTAAGGTCTACATTACCCTGTTACCAAAAGTCTGAGAAAAGAcaacacaaaaatagaacattgtacaTC-ATAtgcctaatgaacacaaatgcaaaatttCCCAAGAAAATACTAGAATTCAacagcacgcacacacacacaaacactaaaAACATTCACTATAATCAAGTTCATTTTATTCTGAGGAtccaaggatggttcaacataa------ccATC-----------------------------------------TATGatgatttcaatagatgcagaccAAGCATTTAATGAGATTCAACATTCCTTCACGGAAAAAGTCCT--AACAAACAGGTATAGTATAGATAAATGgaacctcaatacaataaagg--atATATGACAAAGCCATACCCTGCATCACACCGAATGCTGAACACTTT-------TCCCTCTAAGATCA------AGATAAGGTGGTCCGCTCTCATCACTTTTGTTCAACACAGTACGAGAAGTTTTAGCCAGTGCAACG-GGTAACA----GGAAtaaaatgcatacaaat----------aaatatgAGCTATC-TTATTTGCAGATTATGTGtgtagaaaaagcaaaatactc------tCTTACCAGGAAACTGTTAAA-Ctgataaa----ttcagtaaagtaacaggattaaaaaacaaa-caaacaaacatcagtAGCTTTTCTATACAACAATAATGAATTTGCTGGTGAAGAAACCAGGAAAGCAGTCCCACCTACAGtaagtctcacacacacacaccccaaaac-------caAACCCCAAACCTAGGaattaacaaaacagt--------------------------aaagaaactgaagagaataCCCAAAAAGTG----CACTTCCAATAC-------------AGACCAG------AAAGATA------CTGCTTAAAAAGTTACCTATACGTTCAGTAGTATCTCCATCAAAGTATCTGAC---ATTCTTCACTTAACTATTAAAGTCAATTCTAAAATGAACACAG---AACACAAGACCTCAGATAGTCgcaac---------aaataaaaaaagcagaggtcaa--catAATGCC---------------------AGAAACAGTAACCAAAACTAGTACGGTATTGGCACAAAAAAAAGGACACACTGACCAAGCCAGATGAATAGATATCCCTACAATAAATCCACCCCTATACTGTGAACTGATTCTTAACAACAGTGCCAAAGATACACAGGGCGCTGGAGAAATGACACTGTTTTCAAC----------------------------------------------------------TCTCACCCTGTACAACATTCAactccaaatggatcaaagagctacaCGTAGAA----------TTTAACtactagaaaaaaaacaaagaagcagcaCTTTAGTACATTTGTACAGGCAGTAATTTTCTGGACAGGACCCTAAAAGCATAGGAAACaag--caagaaatgataaatggTATTACCTCAAGTT--Aaa----ctgtacagcaaaggaaattaATGGAGGAAATTAATAAGGAAATTA----ACCAACGATATGGGAGAAACAATCCGCCAATTATTCATCTGACAGAGACTTAATATCAGAAGAtataagaagtttttaaaaa

a score=40072
s chr3            7219730 1905 + 160039680 AAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAG---AAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCA--TGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTG---ATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT---TTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGA--GTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATT--CTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCT-TATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGAC-AAAAACCACATGATCATCTCGTTAGATGCA--GAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT---AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaag--------------ctggaagcaatcccactaaaatcagggactagacaag-gctgcccactttctccctaccttttca--acatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttc
s HiC_scaffold_1 67242780 2032 - 233722169 AAATGTAAAGGAGGTTACTACATCCTAGTAAACCAAACAATTCAACAGgcagagataacaattataaatatatatgcaccaaacattgGTGAGTctcaatttcataaaatataaactacagaaaaatataaGG-ACTGATAAACACCAACACAATCATAGTAGGAAACTTTAAGTC--CACTCTCACAAACAgacaggtcaactagacaaagaaa-tgaagaaagaaatatcagagttaaatCACATcattgaacaaatggactttacCTACATTTGCAGAACATTTCATTCAAAAACAACAGAATGTACCTTTTTCTGAGCacta------attttctccaaaaaagacC-----------TATATATCATCCTCAAACAAATATGCAAGATTTGAAATAATCTCTTGTATATTATtggataatagaaaaataaaattagaaatcaacagTTAAGAACTCATAAAAACAATGCTAACAT----ATGGAAATTCAATAACACAGTCTTGAATAATC------------------------AATAAGTCACAGATTCAGTTCCAAGAATCAAAAACATTAGCAACACAAAATACCAAAACCTATGGGACAGGACGAAAGCAGTTATAAGAGAGAAGTTTATAGCTGTAAATGTGCTATTTAGAAAAATAAGGTGATGACAAAT------AACCCAATAATGTATCTCAAGatattagaaaaacaagagcCATTCCTACCCAAAAcctgaagaaggaaagaagttatACGTGTCAGAATAGAAATTAAGGTAAttcagaccaaaacaa--------------aaacaaaaaaagagtagtTTCCTTGAAAGTATAAacaatacatataaatatttagccaaacttttcaaaagatagaaagaaaacgTTTATACAAATGCAATTAGAAATCAAAAaggcaccaggcatggtggcacaagcttgcaatctcagcattctggagactgagacaggagcatcacagTAAGTtcgtttgaggccagtctgggatacatagtgagtttaagggcagcctgaactgcataatgaaaccctgtctcagaaatgcaataaataaacaaataagctaGAAATCAAAACTAACACTGCTGAAATCCAGAGGGTTATAAGATTATTCT--GAAAACTTACATTTCAATAAATTAGAGAaactagaagaaatggataaattcctaggCACATATGACTCACTGAAAgtggatcaagaagatatgaaaactCTGAACAAACCTATAACAGGCACTGAAATTGAAGCAATAATAATTG---TACTGACTAAGAAAATCCCAGGACCTGATGCAGTCACTGCTGAATCTTaccagaaatttagagatgaactGATGCCTGTGTTCTTCAGTATCTTCCATAAAATTGAAAGTAAAGAAACTTATCACCAAACTTATTCCTTAAAGTTAGCATTGCCCTGATAACAAATTTGGACAAGGACTcaacacaaaaagaaatgtacaggTCCATTTCCTTaaatgaacatagattc-aaaatCCTCAACATGATCCTTGcacacagaatgaaaaaaatcttttaaaaaatcatataccATGACAAAGTCAGCTTCATTCCAGAGATGCAAAAATGGTTCATCatacaaaaatcaaagaatgaaatacatcatataaacagaaataaggataaaaaatcacataatcatctcaatagatgcatctCAAAAGCCTTTCACAAAATCCAACACCTACTCATGATTTAAAAAGTCAGACAAAAATAGGTAGGGAAGGAACTTTCTTTAAACA-GATAAAAGCTAT-TAAGTCAAATCCACTGTCAACATCAtgctaaaaggaaaacaaacaaacagaaaactctgagaacattccccctaaaatcagaaacaagacaagaatttATCACTCTCCCTATTCCTGTTTGGTATATAGTACTTGAAATCTTAGCCAGAGTAATCAAGCAAGAGAAAGCAATAAAAGGGattcaaataggaaaggaagaattcaagCTACTTTAATTTGCAAAGCACATAATCCT-TATAGAGAAGACTCAAAAAA---CACCTGAAGATTTTTAGaactaataagcaaattc

a score=6477
s chr3             7219828 307 + 160039680 ATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAA-CAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATAC-CTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGT
s HiC_scaffold_1 207020787 302 - 233722169 ATACATTAATCAAATATTAGGATACTTTAGGGGAGG-ATAGAGTCCAATACGGTAACAGTAGATAAATTTAACACCCCACTGTGAGCAATGGAGACATCATTCAGACAGAAAATCACCGAAGAAATAGCAGAGCTAAATTGAAGCG-TAGATCAAACGGACCTAACAGGTATCTGTGAAACATTACATTGAGCAACTGCAGAATACACTCTTCTTGTGAGCA---CATGGACTATTCTCCAGGATAAAT--AGTGGCAAACTACAAAACAATTCTGAATCAATTTTGAAACACTGAAATCATACCAAGT

a score=31525
s chr3            7219875 1312 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG----AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG-----TTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT------AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAA-----TAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATAT
s HiC_scaffold_1 81049449 1276 - 233722169 ACACAGTTATAGTGGGAGACCTCAGTATCCCACTATCAaaaat----agatcaaccagacaaaaatatcaacaaacacatatcagagttgaacaaaactttcaaacaaatggacttaatagatgtctacAGTGTGTCCCACtc---aacaacagaaaacacattcttcttagaAGCATATGGAATGTTCTCCACAATAAACCATATAGGATACCATAAgccatgcttaagtaaatgcaaaaaaatgaaaattattctttACATATTACCAGATCAAAGCACAGTAACAGAGAAAT-CAATGACCAAAGAagccacagaaattatgcaaatacaaggaaattaagcaatattgttttgaataatcaatgagtcacagaagtaACCAAGGGAG-----------TTCCTAAAATCAAACAGCACTACCAGTACAACATTCCAGAAATTATAAGACATA--GAAAGCAGTTTTAAGAGGGAA---------------TATCCACAACAGGAAGACAGAACGAGCACAAATAGACAATCCAATGATACACCTCAAGGTCCTCCCAaaata--atccaaat----ccaaagccagtacaaggaagaaaattataaagatcagaacagaaattaatgaaattgagacaaaaaataaaaccaattaaaatgaaCAATGAATCCCAAAGCTGACActtcaaaaaaatgaatgaaatagacaaatgcttagccaatcttatcaaaaaaga-aaagagaagacctAAGTCAGTGTAATTAGAAATAAAGAGGT-GAAATCACAATGCACATTGCCAAAATCTAAAAGAATATTAATGACTGCTTTTAAAGGCTGTACTCCAATACATTGGAGAACTCAGAAGAAGTGGAAGGACTTCTAGACT----CTATGAATTTCAGTAGAAACTGAACCCAGAAATATAAACAACCTGAATATTCCAATAACAgccaatgaaattaaaacaataatttttaaaaaaaccctgccaactaagaaaagtccaggatgcaatggattcactgctgaaatcTATAAGAACTTTAGGGGAGATCTAATGCCAATgttcctcaaaatctttaataaaattgaaaaggaaggaatacTTTCAACATTATTCCTGGAAGCTAACATTACCATTATTccaacaacaattaaa---------aaaaaaaagaattacatgcCAATTTCTTTAATGATCATGAATGCAAAAGTTCCCAACCAGATacaatactggcaaacagaatacaacaaattatcaaaatgatCATACATCTTGACCAAGCAGGCTTTCTCCTAGGGATGCAAGGGTGTTTCAGTAT

a score=15511
s chr3             7219929 515 + 160039680 GGAAACAGA-AACTAAACAGGGACACACTGAAAC--TAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAA------GCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA
s HiC_scaffold_1 127275207 512 - 233722169 ggaaaaagacaaaaaaaaaaaaaaaaattaaagcaataacaGCATTGat----caaatggacttaacagataGCTACAGAGAATGTCATTAAATGACAACAGAATACACAATTTTCTCAGTAGCACATGGAACTcattccaaaatagaccacattttAGATCATAAAGAAtatctaaataaatacaaaagaatttaaataatcttCTGCATATTATTAAATcataacagaataaagctaaaaatcaataggaaaataaaccacagaaattaCATGCCAACA----CACGAAGATCAAAGAGTACATTACTATATAATCAAtacatcacagaagaaatcagggaTGAAGTAAAGAAGCTTCTAGAATCAAATGGCAAAGGAAGCACAACATGCCAAAATGTATGGGACACAATGAATGTAACACCAAGAAGGGAGTTTATAGTTGTGAGTATATACAATAAAAGAAGTGAGCAATCCCA----AGTAACTTAATGATGCATTTtaagttcctagaaaaacaagaa

a score=56159
s chr3            7219940 2210 + 160039680 CTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCA----CCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCT---TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAA--------ATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAG----GGCACAGGGACAAAATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttt-tcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttct--caatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc-gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaa----ctgcatggtactggtatagagacagacaagtgga
s HiC_scaffold_1 97120739 2141 - 233722169 ctaaaagaaaacccactagaA------------ATACAGCAAATGGATGTGGTAGATGTCTGCAGAATGTTCTATCCTAcaaaatcaaaatacacattcttctctgctgcTTATAAGACAGTCTCCAAATTAGAACACATACTAGCTTatagagcatgcttaagtaagtgaaaaggaattgaaattatctcatgcgtATCATCAGACCAAGCATAGTGCAATGAA-------TTggaaatcaaaagaaatcacatatTTC--ATAAACACATG-CAATTCAACAATGACCTCCTGAATAATCATAGGGTCTCaggtgaaatttaagaaaaagttaGACAGTTTTACCA--TTAAGGCCAATG------CAACATACAAGAACTTATGGGGCACAATGAAATCAGTCCTATGAGAGAAATTCATAGCACTGAATACCCAagtcaagaaaaca---gagcaagctcaaataaacaacttaacgCTAAAACTCAAGTTTccagaaaaggagcaagtcaa---gcccaatgtTTGTACAGTGAAGGAACATTAGAGATATTGAAGCAGAATAATG----CAACAAAG-----ATTAGGAAAACTATATAAAGAATCAGTAGATTGAATAGTTAATActttgacagattaaataaaactgataaactctTAGACAAccttctcaaaaaaacaaaagaggaaaaaaatcctcaaatctatgcaattagtaatgaaaagaatgaaatcacaatACTTTCTGCAGAAATGTAA---GTCAACAATCTCTACTTCAAGAACCTGTgttctaataagatagaaaacacaaaagaaatggatagattcctagatacacatgagTTATCacagatgaataaagaagatataaaatttctaaataaaccaatgtcaatcagtgaaattgaagatacaattaaaaacctacaaacagagaaaagcccaggacctagAAGATTCCTTTctgaattctacatgaaatttaaagaatACCTAAATCCGCTACTTTTCAAATTCCTTAATgcaactgaaagggaagcaacgctcccaaattcattcctgaaattAAC--CTATTTTGATGCCAGCATCACAGAAGGTTCCAACCAAAA-AGAGAGCTATAGATCAATGTCTA--ATGAACCTAGACACAAAAATCC-AAATaatatactggcaaacagaatgcagca----atcAACAAGATTATATATCGTGACCAACTAGGACTCATCCCAAGTATACAGGGCT-GTTCagaatatgcaaatcaataaatataatacattaaattaacagagccaagaacaaaatgTATATGATTATCTCAATGGACGCAGAAGTG----TTGACAAAGTTGAACa-ccgttcatgataaaaaatactatagaaaattggaat--aaaatctTTATCTCCATCTGATGAAAGTCACCTATGACACACCATCAACCAACAT---ATTacatggataaaaactgaaaactttcactctaaaatcaggaacaagacaaggatgttca--ttatcaccactgttatcagcatagttctggaaacattagccagagcaattagagaacagaaaaacataaaatgaataatgataataaaa-aagaatttaaattatca-tttctgCAGATGATATAGTACTCTAAATAGAAGGCCTCAAAAATTCTGCCAAAGACATTCTAgagttaataatcaaatttaataGCGTAGATGGAcac--agtcaacactcaaaactcaattgC--------------------AACTCACTGATATTGACATTAGGGAAAAAACATCTTTATAATagtattcaaaaaataaataaaatacctaggaatcaatgtaATAAAGTAAGTAAaggatctttacattgaaaac-taaatactctgaaaaaggagattgaaagatatatcagaaaatggaaatatacccCTTGTTATTGTGTAGGAagagccaatatagtgaaaatttccaccttccaaaaattattatacaaatttaatgcaatcctgatgaaaataccaatagcatatcacatagaattagataaaacagttctaaaaatcatttgtaaccagaagagaccttaaaatagcaaaagcaattttgggtTACAAAGGCATGGAAGG-GGCATCATAACtcatgatttgaaattatactacaaaactactatgataaaaataacCATCATGGTACCGt--cagaaacaagcaaacaga

a score=12544
s chr3             7219978 1326 + 160039680 ACAAATGGATCTGACAGATATCTACAGAACATTTTACC--CTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACAC----------------AATG------AAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAG----CAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-------------CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-------AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCA-----CTATTACTCTGATACCTAAACCACAGAA--------------AGATCCA-------------ACAAAGATAGAG-------AACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAAT-CCTTAATAAAATTCTCGCTAACC-----------GAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGG-------------ATGGTTTAATATACG---AAAATCCATCAATGTAATCCATTAT-------------------------ATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA
s HiC_scaffold_1 196021386 1363 - 233722169 ACAACTAGAGGTAACCAACATTTATAGACCATTCCAACAACGAGAGCAAAA---TGTATGCTCCTCTCAGGCAGACATGGAACTTTCTCAAAAATACACCATATGTTAGGCCACAAAACAAGCCCTAACAAATTTAAAAGGATTGAAatcatgcaa-ataaaattttgaaacataaagGAATTAAATTGGAAGTCAACAACAGAAAGAGAGTTAGGAAATTCACAGGCatacagaaatt-aacagaa----gCCCAAGTAAACAATGATTCAAAAAGTAATAGTGA---ATATTAGAAAC------ACATTCAGATGAAATGAAACCACAACATAAGAGCAACTATATGTCACTGAATTAGATAAtttagatgaaataaaaaatatttct-ataaagaCACATTTACCTA-AAATGACTC-----AAAAAGGATTAAATGCTCATAGCAGGCCTCAACCCAATAAC----CTAGTATTTc---agaataaggaatgaaaaatagaataatagcGAGCTAAAGTAACATAAGCAGcagaaaagaactaaaaattatattgaaaataaatgacagaaaattattaaaaagaagag------agaatattAAGGAAAGTAAAAATTGAACCTTTTAGAAGAACCACACAATGGACAATTTTTAAGCTAGATTTAGCTCGAGAAAAACAGTTAAGATTCAGGTTATTAAGATCAAGAATAACAAAGG-GTTATCACTGGTAAGtttgaagaaatagaagaaaagaacagG--ATTGTATAAGCCACCCTTTTCCAGGAAATGAGACAAATTGGACATAATGga---------------------------------aaatca--------ttaattttatagACATTAGCAAATT------GGGAATtcagtaaccaaaaaaaaatgccACATACAAAGCATGAC-----CCAAATGGCTCCATTGTTGAAATCTACTAAACACATAAaagacatttaatatttattcttcaccAAC----TCACCAGAATAAAGTCAAAACAATTATTTCCAACTCCTCCTATGAGGCTAATAGCATATTACTGTAATATTAAAATCAGAGCACAGGGTCACATGATGGATGCATTTGTTATGTATCACAGTGATGCAGTTTAACAAATGACAGGTCACTACCACTCATGAGTGT--AAGCAAAAACGTCTCAGCAAAATTGTAGCAAATCAGATATGtataaaatgcagaaatatataaaa--aattatctAACATGATAAAATGGTATTTATGCTAGAAGTACAAAGTTCACTAACcaataacattaaaaatgtgtTAAGAAACAATCAATGGATTCTATCATTCAACAATGAATCATAAAACACAAcattaacagaataaaagataaaaa-cacaggAGCATCTCAGTATATGCAGCAAAAGCGTTAGACAAGCTGC-ATTCTCTTTCATGATAAA

a score=3866
s chr3             7219989 136 + 160039680 TGACAGATATCTACAGAACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAAT
s HiC_scaffold_1 216284955 136 - 233722169 TGATACCTATCTCTAGAACATTACTGGCAGCAACTGAAGAATGTCTATTCCTCTCAAGTGCACATGGTACTTTTACCAAGACAGATGGTATGCTAGGATATAAAATAAGTCTCAGTACATTTTTAAGTACTGAAAT

a score=47867
s chr3            7219991 2456 + 160039680 ACAGATATCTACAGAACATTTTACCCTAAAACAAA--AGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCA-CAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACA--CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTT-GGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAG--GAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA---AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAA------------------ATCCAAAACACCATCA---------------------GATCCTTCTACAAAAGGCTATACT------------------------------CAACAAAAC--------------TGGAA--------------------------AACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTAT---TAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA-AAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCT----AACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGAC-------AAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAA----------------GGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtactt-gaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcag--aagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtact---------------------------ggtatag----------------------------------------------------------------------------------agacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagaca----ctgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaa
s HiC_scaffold_1 72283543 2558 - 233722169 ACAAATTTCTAAATATCATCCTTCACTAAAACAAATCAGGGCATACT-----------AAAACATGG--CTGGTTCCAGAAC------AAGAGTAGGTCAATAAAACAAGcttaagaagatgtaaaagaattgaaattataccatgtatatttttatatcctaCAGCAATAAAGTTAGAAAtcaattacaaaagaaaacacaaaaattatccAAT-GCATGAAAACTAAACAATAAGCTCTTCTTCAAGGGATTAgag---aagaagaaatcaaagaagatgtTAAGACAGTTTCTAGAACTAAATGATGATTGCAGTA-AACATAATCAGAATTTAAGGGACACAACAAAAGCAGTTCTAAGTGGGAAGCTTATAGCTGTAAATGCCCACATGAGAAAAGCAgagcaagcccaaataaataacctaacaaTGCTcttcaagctcctagaaaaacaagaa--caattcaaACTCAAAAGTCATCAAAAGGGAGGAAAACATAAGGGTTAgatcagaaatcaatgaaattgagaccaaaaaaaaaaaaaaaaaaaaaaattcaatgaacCGAGTtaattcttcaaaagaataaacaaaacagacaaaccctTTGCCAAGCTCATCAatgtaaagcagaaaaaaaagacccaaatcaacacaattagaaataaaaacggtgaaatcaaaatggataccACTGAGTCAGGCGTGACagcgcatgtctgtaatcccagcactcaggaagttgaggtaAGAGGTTTCCCttactcaaggccaacctgagctacaaatgagaccctgtctcaaataacaaaaaaacaaaacaagacactgTGGAACTCAAAAAGATTATTATGTTGCAAGGAATCCAGAAGAAAtg---agattcctagatatatatgaattattaaaactgaaccaagaagatttaaaaactctAAATAATCC----------------AGGGAAGCGAtcataaaaaaaaacctaccaactgagaaaagcccaggtct------tttCACTGCTGGATTGTACAAAAACTTCAGGGGAAGATCTAACACCAGTGttcctcaagctctttaatgaaaatgaaaaagaaagaatatccCCCAAATCCT----AGAAGCTAGCACTACCCTGATTCCACAACTAGACAAGGATCCAACCAACAAagtgaactacaggccaatctctttaatgaatatagacgcaaaaatccttaataaggtACTGACTGGCAAACAGAGTATaatgaatcatcaaaaagatcatgcaTAACGAACAAATTGGCTTTATCCTGCAGATGCAAGAATGGCTCAGCATAtgcacatcaataaatgtaataaat--aactAACAGAAtccaagatcttttaaaaaaatgacatgatcatctcaatagatgcaaaaaaggcttctgataaaatccaacagt--ttcctgaaaaaaaaaaaaaaaaaaaaacaaactcaagaaaATAGGTAAGGAtggaccttatctcaatctgataaaatccatttaTGAC-TACTATTAATTAATACCATATTAAAtg-------actgaaagcttttcctctaaaatcaggaacaagacaagaatgcccACTATTACCATCCCTGTTCAACACAGTACTTGGAAAaattagcaagagcaattaggcaagaaaaaga----aaaggaatgtggatagaaaaagaaga----aaaatttccattATTGAAGACT------TAGAATACTCAA--------------CACACCAAAGGACTCt----ctgaataaccaaattcagtaatgtagtagGATATA--------------AAGTCAATAGGGTTCCTATACACTAATATGAACC---TAAACAAAGAAATGAGG--AACAATACTTTTTATAATAGCATGAAGAACCATTAAATATATAGGAATTAACTGAACTAAGG--------GATCTCTATGATAAAAACTACAGTATGCTGAAAAAGGGAAATCCAGGAGATCATGGGAAAAATGGTAAGATAGCTCCTGTTCCTGAACAGGCaaaaccaatatagtcaaaatggtcatacttccacaACTGATACGtggatttaatgt------------aattccaac---aGTATTCacaaaactggagaaaaaaatcctaaaactcatACAGACCAG-AAGAGACTCAAAATAGTAAAAGGAATCATGGATAACAAGAGGAAAGTGGGGAGCTTCTTAATCCCAGACTT-GAGTTGGATTGTggagctacaatgataaaaatagcagggtactaacacaaaaacagacaccaggcccgagggtttagctcagcggtttgAGTGCCTACCTaccaagtgcaaggtcgtgagttcagtccctagtaccaaaacaaaaacaaacaaaaaataaaacagacaagagGATCAATGTAACAAAATAGAGGGTGCAAAAACAACCCCAAATACATTCAACAATTTGATATCTGACAGAGTGGCCAAAATCAAGCACTAGAGGAAAGAAAGCCGTGTTAGTAA----TGCTGAGAAAACTGCCTCCCTACCCGAACAAGACTG-----------AAATCTCTCAtcaggcactaaactaaaattaaaatagatcaa-gaactaaatgtttaaaaagaaatagttgctgaaa---------gataaaatagttaaaaCTCTTG-AGTCACTGGCGcagacaaggactttctgaa

a score=5157
s chr3             7220005 195 + 160039680 AACATTTTACCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAAC
s HiC_scaffold_1 102006868 183 - 233722169 AATATTCCAtccaatagaagcagaaaaatcaGTCTTTTAAAGCCCTTTAGGAACATTTTCCAGGATAGAACACATGTTAGGTCACAAAACAAGTCTTAACAAACTGAAAATGTCTAAAATCACACCAAGTATCTTTTCCAACCACAatggaataaaatta------------gaaattaataacagaaagaaaac

a score=9468
s chr3             7220057 463 + 160039680 ACCTTCTCCAAAATTG-ACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTG-ATCTTCAATAACAAAATAAATAACAGAAA---GCCAACATTCACATGGAAAC-----TGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 135153238 439 - 233722169 ACTTTCtccaaaattttgccaaatactAACCCATAAAGCacacttaaataaatacaaag---------ttatCTGATATAT----GAAaatcatagtacaatgaaactggaaaccCAATTGCAGAAGAAACAACAGAATTATGTAAACACATGGATATAAACATacttgaataa--------tcaatga-------gtcatgggagaaataaaggaagaaagtagATAATTGcattaataaaatgataatgcCATTTCAACATACCAGAGCCTATGGGGCACAATGAAATCAGTCCTAAGAGGGAGATTTATAGCTACAAATGCCTACACCAGAAAAATATGgaaagcccaaataaataacctaatgaaaCATCTaatatc-caacataagaacaagGCAAAT----CCAAAGCTAGTA-CTGGATGGAACTTACAAAGATCAGTGTAGATGTTAataaaattgagattaaaa

a score=8310
s chr3            7220182 387 + 160039680 AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA------AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 24186805 369 - 233722169 AATTGGTAGAAACTC--CATGTATTTGGAGACTAAATAACATGTTATTGAATAATCaataaatcacagaagaaatcagggaagaaataaaaagatttctaGAATCAAATTGCAATGGAAGCACAACATATCAAAGCCTGAGGGACATGATGGAAACATTTCTAAGGGGAAATGTCATAGAT-TAAATGCACACGTAAGAA---GAGAGTAATCTCAAATAAATAACTGAG----------AAAGGTCCTAGAAATAACCTAGAAAGATAAAGAGTAATCCAA----ATCTGAAGGAAGGAATTTacaaagatcagagtggaaagtAATGAAGTTGAGACTAAAAA----ACACAAAGGACCAATGATGCAAAGAGCTGATTACTTGAAAGGAT

a score=64382
s chr3             7220231 3061 + 160039680 AATGATACCTTGGTCAAGGAAGGAATAAAGAAA---GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAA-GAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATG-----AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCT-------TCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGA---GAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGC-AGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC-AAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactt---tttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccat----------------------------taaaattccaact------------------------------------------------------------------------------------------------------------------------------------------------------------------caattct----------------------------tcaacgaattaga--aggagcaatttgcaaattc-----------------------------atctggaataaca-------aaaaaccgaggatagca-----------------aaaactcttctcaaggataaaagaacct-----------------ctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttct---gcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagat-aggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctca-gaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggct-tgtacaaccactctggaaatcagt-ctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgg-gcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacaca-------atg--------gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactagcccaaaa
s HiC_scaffold_1 166598720 3216 - 233722169 AATCAAGTTTTGATCAGTGGATCattcaagaaatagaaaattttgaaatttttagtctcaaatgaaaatggaattaCAACATACCAAAATCTCTGGGACATGGCAAAGGCATTTCTAAAGAGGGGAGTTTATAGCTATGAATGCTTGCATCAGAAAATCTCAAATAACCTACTCTG--------------CCTCTCAAGGTCTTAGAATAACAACAAGTCAA---AACCTAAACCAACAGAAGGAATAGAATAGCGATTATTAGAGCTTTAAGTTAATGAGATGGTAACTAAcagaa----------gatcaatgaaaca--gagtcatttctttgaaaaaataaacaagattggTAAGCCCATAGTCAAACtaaccaaaag----agagaaaagacccaaatcagtacaattagagatttttttaaaagggagaggATATAACAGACACCAGTAAAATCCAAAGAATTATTAGTGACtcctttgaaaacctatattctaataaactAGAGAATCTAGGAAGAATGGGAAAATTTCTAGTTATACACTA--TGCCAAAACTGAAAACTGAACCAGGAGATGTACAAAAACCTAAACAGATctataacaagcaatgaaattggaGCACTAATAAAAActctatcaacaaagaaaagtccagaacCATGTGGGTT-ATTGCTGCATTTTACCAGACCTTTATAGAA---CTAACACCAGTGCTGCTCAAACTATTGCATGAAATAGG----GAAGGAACACTTTCAAACTCACTCTATGAAGCCATTATCACCCTTATGCCAAAACTAGACAAGGAcacaaaagaggaggaaaaggattaTATGCCAGTATCTTTGATAAATATAGAttcaaaaatccttaataaaatacttgGAAACTGAATTCAACAACACATTAAAAAGATTGTGTACCATGATCAAGTCAGTTTCATTCCAGGAATG-------GTTTTAGCATatctaaattaataaatataatacac--catgaATAGAATCCAAGAtgaaagtcacatggtgatctc----aatgcaaaaaaaagctttcaacaaaatTGAACATCCCTTAATGATAAAAGCCCCCAAAGAAGTTAGATTTCAAAGGATCATTCTTCAGTATAGCGAAGCCCATATCCAATAAACCCACAGCCAATGTCATTCTGAATGGGGAAAAACTAAAAGTATTTCattcaaaatcaggaacaaggtaagaatatacattcttcccattcctattcaatatatttcttgaaattttcatTGAAACAGTTAGccaagaaa---atatagaaagaatacaaataagaa------aagttaaattatccttcTTGTTTACAGACAATATAATTTTGTACTTAGAAGACTCTAAAGACTCCATCAAGA----CTTAGAGCTGATAAA----TTCACCAAAGTAGCAGAATATAAAAtcagcatttaaaaatcaatagtttttCTGTATACCAACAACAGGCAGgt-----gagaaatcaagaaaataattttattcacaatagcttcaaataaaataaaataactaggGATCAACCTAAACAA-TAGGTGGAAGACCTCTGCAGT-GAAATTTCAGAACACTGAAG-----AATTGAAGACGACACCAAAAGATAAGAAGACCTGCCATGTCTGTGGATTGATAGtactaatattgttaaaatggctaTATTACCAAAAGTAAACTATACATTCAGTGTAATCCCTGTCTTGGATACTTtcctcttattgctgagacaaaatacccaatgccaaAATAAAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTAGAAAAGATTTTTTCTATCTCTTACATTGTATGTTGGCTACCCATCCTAGGGtgagtgtaacactcacacccataatccaagaattggaccatgaatcaatcacaaactccagaagcccacccccatgaccacatgaggctttggatggaCATCCAGACACTAACCATTAATAATACCCATCAAGGTACCAGtgatattcttcacagaactagataaTCGTAAGCACAAAGACCAAGACTGAAGGCATCAAAATAcccaatttcaaattatactcCAAACCCATAGTAACAATAAGAGCACAGTACTGGCACAAAACTAGACATGTAAACCCA--ATACAGAATGGAGAACACGGAAAT----CCCTACAACT------------------ACAAAGGAGCTAAAAATACACA-TTGAAGAAAAGCAACCTCTTCAAA---TGATGCTAGGGAAACTCGATATCA-CttgtagaaaattaaaactagatcccTATCTCCTGCATTG-Accacaatcaaatgaaaatgaat-aaagatcTAGATATAAGACCtaaaactttgaaactgctaACAGTGAA--CAGGAAAAATGCTTGAAAGCACAGGCACAGGCAAATGCTTCCTGAATAGGACTCAAAGAacacaggaaataatagcaagattCAACAAATGGAGCTGCATCAAATT---AAGTTTGCAGAGCAAGGAAAACAACAC----------------AGACAGTTTACAGAATAGGAGTAAATATTTAT--------ACTCTGATGACAGAATTAGTAGCTACAATATATCCAAAACTCAAAAGTCTTAATGCtgtaaaatcaaatagaatagtC-AATAATGGAGCAGATGAGTTGGGtaaatacttctca---aaagaagtacaaatggccaataagtatatgaaaaagtgttcaacatctttagccatgtgggaaatgaaagtcaaagatacattgagattccatctcaccccagtcaGAGTGACT---GTcaagaataca---aacaataaaagctGATAAGGAAGTTGGGA-----GGATCCTTTCATACCACTGGCAGGAATGTAAACTAAATGTAGCCTCTATAAAAATCAGTATTGGAGGGTCTTCCAACAACTAAAAATGGAGCTGTCGTTTCATTCACCTTTACCTCTTTTGGTATGTATACCCAAAGTCAGCAT--ACTATAGAGATAGCTTCATACCCT----TGTTCCT-GCAGCATAG--TACAGTACCCAAGACATGAGACTAGCTGAAGTG-CCTTTAATGGGTGAATGAGTGAAGAAAATGTAGTAGATGTGTAGATATTAACATGTGTTTAGTGAATACTATTCAACCATAGAGAAGAATGGAATTTTGTAATTTGTAAGAATATGGATAGATCTGAAGATTATCATGTTTAGCAAAATAACCCATACTCAA--------ACATCACATGTTCTTTGTAATATATG-----TAATCCaaaa

a score=19807
s chr3            7220314 1098 + 160039680 AAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAA------AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAA--------TTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTT-CTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA----TCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGA-AAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaat
s HiC_scaffold_1 78466903 1069 - 233722169 aatcccacaGGGCACAATAATA-CAATCCTAAAATGAAAGTTTATAGCCATGATAGCAAAcattaaaagaacagaataattcCAAATGAATA-CCCAATAAAGCATCTCAAGGttctagaaatttttttaaaaagactaaattcA-----AAACTGTAAAAGGAAAACATTA--CAAAACCAGTTCCAAAATtcatgaaattgagactaaagaaa---tacaaaggattaataaattaaataaatgattctttgaaatgataagcaaaattaattaaatgttagccaaacatcaaaaaaaaaaaaagaaaaaaa----aatcaatgcaattaaaaataaaataggtgaaaTAACAAA----TCTGCAGAAATTCAGATAACtataagaaacaattttaaaaa-ctatattcaa--AAATTGGTGTATGTAGGATAAATGGAGAAACATAGACATATTTTGACATATTTGATTTATTGAATCTCAAACAAGA--GACTTAAACTCACTGAACAGACAataatc----aatgaaatagaaagagtGCTAAAAA----CTGCACCAAGAAAAGCCTTGGACTTGATGGATTTACTGCATAAATCTACCTGAACTTCAAGTAAGATCTAACACTAATAATCTTCAAG-TCttccataaaattataaaaaaaaggaGCTCACAAAACTCATTACTTGAAACTAGCATTAGCATAATACCAAAACCA-AGCAAGAACttttcaacaaaaa-ataaaactgtaggcCCATCTTCTGAGTGAACATAG----AAAACTcct---caaaataatagtaaaatgaaaGTAGAAGGTCATTAAAAAAGTCATACTTCATGAGTAAACTAGCTTCAACTCAAGGATGCAAAGACACTTCAACAAATGTAAGT-AATAAACATAGTGCCTTGCATAAACAGAGGGgagaacaaaaaatacatgatcaTCTGAATAAATTCAGACGAA--ATTTAACAGAATCCAAAATTCAATCATGAAAAAAATCCCTAATGAAAATAGATATGGAAAA--AACATCTCAAACTGATCTAAG-AATTTATGACAAATCCCATCCTCACATCATATTGAATGGGATAAAACTGAAAGCAAT

a score=9632
s chr3             7220483 652 + 160039680 AAACTCAGGGGTG----AAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAA-AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT------CAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAAC----AGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAG-TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC-CAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCA
s HiC_scaffold_1 195772441 627 - 233722169 AAACTCGCGAGTACACAAAAT--ACAAgatagaaacaaaagaga--------aaaaccaatgaAAAGCAGAGTTGGTTCTTTGTTGAGAGCAAGGAAGT-GAAATCTCTTTAAGCAGACTAAC---------CATGAAAATAGTC--GAACactaaaatgaaaagtgaaagagTGTGTTATTGGCAC---CCTTGCAAAAGTGAAAAGGTTTATAATATATT---------GGTTATAATGTGTGCCAACAAA-TTAGATCATGTGGATGAAGCTTTAAAATTCCTGGACAGACACAAACTACTGCAAGGGATtcaagtaaaaataga------aaactagaaGACACATATTAACTAAAAGTACTGAATTAGTGTTTAGAAAACTTCCCATTAAAAAAAGCCCAGACCCATATTGGCTTAGCTGATGAATTCTAGCCAACATTTATAGAAGAATTACTTCAATTCCTTCAAATATTCATGCAAAATATAGAAGAGAAGGAAAGTCTTTCCAGCTTATTATATGAGGTTATTATTATCATGATGCTAACcagacaaaaacatttaaaatgaaaagaaaattatagatatTACATTCCTTGTGAATATAACTGCAAACATCTTCCTCAGAACACTAG-TAAATGATtccataaatgttttaaaaggattA

a score=62502
s chr3             7220552 2632 + 160039680 TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACT----AAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAG---CCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattc----------------------caccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatc-tcagaagatggaaagat----------------------------------------------------------------------------ctccca----------------------------------tgctcatggattggcaggaccaacattgtaaaaatggcta-------tcttgc---------------caaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgat-----------------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcg--agaattgacaaatgggacctaatgaaactccaaagtttctgcaaggc-aaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaata----------------------acccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcagg---------------tgacagcagatg-------ctggc------gaggatgtg-------------------------------------------------------------------gagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaa--------gccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatg---aatttatgaaat
s HiC_scaffold_1 107590616 2836 - 233722169 TGgaactttaaaacattaaataaaatagacaaacacttagccaaccttatctaaaaaaggaaacaaagaaaagactcAGATCCATTCAAT-AAAGATTAAATGGGTAAAATCataacagatcctgcagaaatccagaaagtcAATAATACCTACTTCAA---------CTCTAGTAAGacggaaaacacagaagaaatgaacagacctctagatacatatgaattcctgaagctgaatcaagaagatataaaaattctaaataaaccagtatcattCAGTGAAGTCAAAGAAggaatttaaaa----acaatcaaaaagagTAACCCGGGTCCTCATGAATATGCTGttaaattctttaagaaatttagagaagatcaaATGCCACTAATCCTCa--ctctttaaggaaattgaaatgAAAGTAATACTCCCAAATTTATTCCTAGAATCAAGCATTACTC--ATACCAAATCtggagaaggatccaaccaaaa---acaactATAAGTCAATCTCTCAGCTGAACATCAatgcaaaa-tcttcaataagatactggcaaacc-aATGCTAtacatcatcaagaagattatgcagcATGACCACATAGGATTggtcccagggatgcaaggatggctcaatgTATGCAAACCAATCAATACAACACATTA-----ACATACTCAAGGTCAAAAACCATATAATTCTCTCAGTAAACACATAGAAAGCATTTGACAACATCCatccattatttaaaataaaa-caccaaacagATATTTGAATAGtgatttttatctcaatcttataaa---------------------agccaagGTCAAAGTAAATAATCAAAAATTGAagtctttcactctaaaatcaggaacaagacaatgatgtgcACCATGGCTACTCACATTCATCCTATTTATGGAAACATTAgc----gcaattagacaagaaaaagaactaaaaggaata-aaataggaaaa---gaagttcatttatccttatttgtagatgacatgatctttAACATAAAAATCCCAAAagactccatcaaaagacttctttGTTTTCACCAAAAAACTTCTATatttaatagccaaattcagtagcatagctggagacaaagtcaacattcaaaagtTAATTacattcctgtacaaaaataaCAGACTTACTGACAGAGAAATTTGGGAAACAata-ctttcacaatag-catacaaaaaatgaaataactaagaaaaaatctaacaaaggaagtaaaagatttttaCGTTGAAAACTAAGGTACTCTGAAAAGAGCAACTGAAGAGgattatcagaaaatggcaaaattaggaccaggaatatagctcagtggcacaagcacctgcctggctagtgcaaggtcctgagtttgattccctgtatcctcccaaaaaataaaaaaaaagaaaatggtaagaTTTCCCTgatcttgggtaggaagaaccaatatagttaaAATGATTGTACATCTTTTTGCACAACCACCCTAGCACAAAATTGTTagacagatttaattcaatcccaatcaaaa-tctaATAGCATATGtcatagaaatagagaaaacaatcctaaaattcatttgg------aagagacctaaaatagcggAAGCAATTTTAGGCAAAaagggcaaagcaggaggcatcgcaatccctgacttgaaaatacACT-CAGAACTaccatgattaaaaaaacaatataaaacaaacagcacagcactggcagaaaaacagacccaatgATCAATGGAACTGGTTAGAAGATGCAAAATCAACACCAAAGGCGCTCAGccactt-atctttgacaagggaaCCAAATGccttcactggaataaagatagcctctttaatgaatggtgctggaaaaactggctttctatatgctgaagattaaaactagactcattTCTTTCACCAcatgctaaattaaaatcaaaatggatcaaagatc-taatattaaaatagaaaaactaaatgtTCTAGAAGGCAGAATGAATAGAACCCTTAAAGACAATTGTGTAGGCAAAGAATTTTTGAACAAAACCCCA----TTTGCACAGGAAAATCACCaaaatcaacaacttggatcttaTTG------AAAGATCTGGCACAgcaaaaaaaaactaccaacagtATGAAAAGATAACTGACagtgtggaaaaaaatttttgtcagctct-tctcagacaaaggactaatatctagaatacagaaagaac------------aactccaaaaacaaaataaacagatgctccacatttaaagacccagtccaaaaatgggcatctgaaatgaataaatatttctcaaatatagaagtaccaatggcaaataaatatacgaaaaaatgttcaacatcactggttatttgagagacGCAACTTAAAAGAATGCT--GATTGCAttccactccagaaagaacagctattatcaagaagtcagggcctgggatttagcccagcaacacaagtgcctgcctggcaagcaagaggttgtgagttccacctctggcaaaaaaaaaaaaaaaaagtaaaagacatcaaccaataagaaatgctggaggtggggaaaagtaacccttctccactgttggtaacagtgtagactggtgaaacca-tttggaaa-cagtgtggagattcctcaaaaacctacaACTAGAAGTCCCATTAGACCTAGCTAT---tctttttggtatcttcctgaaagaattaaaagcatcacacc-----acagtgatatatgcacatccatctttatagcagcacagtttgtaatagctaaatcttggaaacagttcaaatgcccatcaatcaatgtatggataaagaatatgtggttttttaatacagtggagtactactgaaTT-TTGCAAACactgttaaatgaatgaaat

a score=68435
s chr3             7220712 2530 + 160039680 TATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG-ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtca-caaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgt-aaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactgg-ttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctt--tacctatcctaaatcagataggggactaatatccaacatatataaaga------actcaagaaggtggacctcagaaaatcaaa----taacccccttaaaaaatggggctcagaactgaacaaagaattctcacctg----aggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggagg----atccagcaatacctctcctgggcatatatccagaaga---------agccccaactggtaagaaggacacatgc---tccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcaca
s HiC_scaffold_1 177567022 2468 - 233722169 tgtattctaataatatggaaaatgtggaagaaatggaca--------------tatgATTTAAAAAGTTTGAATCAACacaatataaaaatcctaaagaaaacagtatcagtcaataaaattcaagatgcaattaaaaacttatcaacagtTAAAAGCATAGGATCTGAAGAATTCACTGCTGAGTTATCCAAAAAAATTACTGGAGAATTAATACTCCCACTTCTCAAACACTTTAATAAACTTAAAGTGGGGGCAACACTcacaaaatcattcctggaagttTTCATATCCctgatacccaaaccagagaaggacccatcCCAGAAAGAGAAATTCAGGCCAATTTCACCCATGAATACAGATGTAAGAATTCTCAGTGAGACACTTGCAAACATAATGCAATAAATCATTAGgtagattatatatcatgacccaATAGAATTCATCCAAGGGATACAGAAATGCTTCCACATATAAAAATCTATATATGTAAATACCCATATTAATATaaccaaggaaaaaaaaacaaatgatcatgccaatagatgtagaaaaaacatttgatgaagtccaacagcaatgaaaaataaatatcctaCAGAACATTGGAATACAtgacctttatctcaatctgataaaagccatctataacaaaccaacagcaaacatcatgctaaatggactaaagctaaaagctttcactctaaaatcaagtaCAAGACAAGGttatccactgtctccactcttatttatCCTAGtcctggaaacactagccagataaattagacaagagaaataaatgaaaggagtaaagat------agaagaagttaaactatcattatttgtagatgacatgatcctctatatATAGTACTCCcaaaatttcatcaaaagacttccagatttaataactaaatttagtTGTATAGCTGGATAAAATGTCAGCACAaa-aaatcaatagtcttcctatacatgaataacaaactcactgagagaaatattaGGGAAACAATAGCCTTCACAAtggcaatcaaaca--atgagatacctagaaatcaatctaataaaggaagtaaaagacctctacactggAAATCTCAGG-acttgaaaaaggagattgaagagggtatcagaaaatggaaaaatattccttcttcttggataggaagaactaaaatagtgaaaaacggccatacttccaaaattg--ctatcgatttaatgcaatctcaatcaagaTCCCAACAgtatatcttacagaattagagaa---aattttgttattcatttggaaccagaagagacctagaatagcaaaggtaat--tcaaCAGTGGGAAGGcc----agggcatcacaatcctggacttgaAATCATATTAtgaaactactgtgataaaaacagaatgccactgg-ggaaaaaaagacctgaggataaACGgaacaaa----aagatac---aacaacTCCAGACTTACTTAACAaccttatttttgacaatgaTGCCAAACACCTTTACTAGAAGAAagccagtctctttaataaatgttgctggaaaacctggcttgcCAT-ATGTTAAAGATTAAAACTAGGTCCATAGCATTCAttgtacactaaactaaaatcaaaatggatcaa-gatctaaatattaaaacagaaataccaaatctgttgaaagacagaataggtagaacACTTGAAGAAATTGGTGTAGGCACAGCctctatgaacaaaaccccaattgcataGGTACTATCTCAAGGAATCagcaactaggatctcatctta--taaaagcttttacacagcaagagaagATACCAATggaatgaagagacaactcacacaGTGAGAGAAAATTTTGCCATCTGTTCC-------ACAAAAGGTTACTGTGAAGACTATACAAAGAATACCCACACAAAAAATCaaaccccccaaatttaaagttGTGA-----ttcaaaaatgagtatctgaaatgaacagatacttatCAGATAAAGTAGAAATaccaaa--------aataatatgaaaatatgttcaacatcattggtcactcaatacatgcaaattaaa--aacactgagattctgtctcaccctCAAAGGGattgctattatcaagaaatcaaccaataacaaatgctggcagaggggtgg-gaaaaaggaaatcttctccactgttagtgggatggtagactggtgcaaccacagtggaaatcagtgtggagatttc-----------aaAACACTAAGACTGGAGGTTACATTCAGCtat---tcttcttggtatcttctcaaaaaaattaaaagcatcctaTCCTAgta------atacatgcatatccat--tgcttatagcagcacagtttgtaataac--aatcttgaaaacagcccaaacaTCCGCCAGTTGATGATTAGCTAAAGAAGATGTGGattattttttcactgaaatactATT---CTATCATAAAGGAC-AACTTgggacatttctagctaaatggctGCACCTTGAGGACATACTCTTaagggaaataaaccagacaca

a score=14274
s chr3             7220712 737 + 160039680 TATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGA--CAGATACCAGGTACCAAAGTTGAATCAGGATCA---AGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAA----------AGAT-CCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-----AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactt
s HiC_scaffold_1 155722854 709 - 233722169 TGTACCAAATTTATTTGGATAACCTAAATGAAATGGACAAACTCTTAGAAACAGAAAGCAG--ACCAAGAGTAACTCACAAACAGAAAATCGAGCATATGTTTAGTCT-------------------GAATCAGCAAACAAAAG---------CTAACAAAGTCCTGGATCTCTCGGTTTCATTAGTTAATTCTACTAACTATCCAAAGGACAT---------GTTCT---CAAACTTTCTCA-AAAACTGAAGAAGAAGGAACACTTTCTAACCCATTCTGTGAGGATAACATTAACCTGACCCCAAAACCAAACAACTACTACTATAGGTATCAGGATATGAAGAAAGCTCTGTATCAATATTCTTTACAAAAATTCACTTAAAAagtctcaacaaaatactagtaAACCAAGCTCATCAGCTTATTAAAAGGATTATAAAGCACACCTAGGTAGGTTTTTTTCCTGGAATGGAAAGATGGTTTGGGATATGAAAAATTATCAGTATGATACGCCATATAAAAA----TGAAGCTTTAAAATGTATGACCATCTCAACTGATGCAGAAAATGTATTTGACAAAGTTCAAAGccttttcatgattaaaaaaaaacactcaaaaaactagaattagaagagaactatctcaaaataat-aaggCCACGTATGAAAACTCCACAGAAAATGTTATACTTGGTGATGA-AGATTCATAGCTTTTTCTCTAAGACTAAAAACAAGGCAAAGATGTCCACTT

a score=11131
s chr3           7220719 711 + 160039680 AACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAA-------------------------------------------------CTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGA-CCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAA--CCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT------------------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggac
s HiC_scaffold_1 6102478 682 - 233722169 aaagaaaatggagaactgaaaaggaaagaatatattCCTAGTTACAGATAAACCACCAAAGCTGAgccaagaaaatatgaaaatcttgAATAATCTAATACC-----AGACAGTAAAATTAAGGAATAAGA------CACTTAAAAAGAACCCAGGTTACAATGAATTCACTACTGAATCCTACAAAACCTTTAGAGGAGATCTAATATCAATTCTTCTCAAAAGCtaatgaaattcaaattcaaggccagcctgcactacatagtgtaTAACTGTTTCCTACCTCAAAAAAACCAACAGTGCTCCCAAAACCATTCCTGGAAATTAGCGCTACCCTGATTCCAACACCAGAGAA----CAAACAACCAAAGAGAACTACAGGGTCAATCTCATTCATGAGCACACCATCAAAAATCCTCA-----------------------------------------------------------gcaggt-------caggcatggtggcac------acatgtgcaatcccagcact------caagacacAAACAAAACTAAGGACAAAAAAGTCACATGATCGTCCCAATTGATGCAGAAAAACCCTTCGACAAACTCCAATATCCATtcgtgatttaaaaaaaaaactaaagaaaatatataaaaagatc-ttatctcaaa---aaaatctaaatctgataaaagctatttatgacaaatcaatagccaacaCCATACTTGACGAAAAGAAGCTGACAGTATTCC--TTTAAATCAAGAAC

a score=14214
s chr3             7220724 1309 + 160039680 AACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGT----TGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACT-----CCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATC----CAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaag-------gctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaattt-----gcaaattcatctggaataacaaaaaaccgaggatagcaaa
s HiC_scaffold_1 126531075 1214 - 233722169 AACTTgacaatttaaatgaaataagcaaatTTCTTGAAAGACACAAATTACCAAAGTGTACCGAAAAAGAAAcaggt----------------------------aaagaaaaata------tatctatatt-----agCCAAATA-----------------GCTTTACTGTTTCGATATACCAATCAACTAAATAAGAAGTTAGTATATATCAAATCTACACAAATTCTTCTAGAAAAttgaaa-aggataaaatatatCCCATATATTTCATTAGGCTGGCCTTACTCTGATATTAAGACTAGAAAAATGCACTTCAAGGAGAGAAGACTACAGACAAGTATCTCTCATGAACATAATTGAAAAAATTCTACTTGAAATTT------ATCAAATCAGATCAATAAGAGGCAAAGAGAATAATGTGTCATGAGTAATTATGGCTTGTCTTGTGAGTACAAAGTAGATTTAACA-ATGTGAACCAATCAC--TAATACATTATA-----AggctaaaaatgaaaaaccatgTGACAATctcaatatatataaaaaaagcaTTTCATAAAATCTAGCCTCTATTCCTGATTCAAACTTCTCAGCAAACCAAG---TGAAGGGAACTTCAACAAGttgataaaaatcattttc--ccAACACACAGTTAACAT-------AATCGTGAAAGACTGAACACTTTTCTCTTACGATT-GAGAAAAGACCAATAGATCTACTCATCATTTTCTGTCTATATTTT-ATTAGAGGTCTTGCACAATAAATAAG--------GCTAGAAACAGTAGGAAAGAGCCATCCAGACTAGAAAGCAAGAAGTGAAATTGTCTTgtttcacagatgacatgattatttatgtagaaaatcct----atgtaatgaaaaaaatagaatac---attagTGGGTTTTACAAGGTGGAAACATGAAAACTCTATATACAATAATCAATA---TTTCCATATACTGGAAATGAATTGCAggaaattaaaatactaaaaaattcaTAGTTTACAATAGCATCACGAAATATAG-----TTTGCTATCAACTTTACAA---AAATGTGAGACTTGTACACTTGAAACTATAAAACATTAGTGAGAAGTTGTACACTAGACTTAAGTAAACAGAGAAGTATACCATATTCGTAAGTTTGCACAcacaatattgttaaaatgctAGTTTTCCCAGA--------ATGGTTTGAACACAATTTCAATCAAAAATCTCACcaggctttaaaaaaaact--gatgaGTTATATATGAAGCAAATATCGATGGAAAGCTAAAAGAACTAGGAaggtaaa

a score=11860
s chr3             7220736 541 + 160039680 TGGATGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCC--------CAGCCAAAA---AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAG-ATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG---TTAGATGCAGAAAAAGCATTTGA
s HiC_scaffold_1 198166622 527 - 233722169 TAGATGAAAT----AAATTCCTGAA-ACACAAAACCTACCAAgactaaattttaaagaa-tagaatatttaaataGACCAATAATAAGTAAGGACATTGAATCAGTAATTTTAAATCTCCAGACAAATCAGTCAAAATTTCTTGGCAAACACCAGATGACTTCCCTGGTAAATTCTgccaaacatttaaataaa---tatctcCAAATTATTTCAAACTTTTCCAAAAACACTGACCAGGAAGGAACACTTCTTTACTCACTCCATGAGGCCAGCGTTACCCTAACACCAAAGCCAAAGAC---TCCAA-----------AACCAGAGACCAAAG-CTTTTATGGAAGTTGATGCAAAAATGCCCAACAAAATGTTAGCAAGTTGAGTTCAGCCATGCAGTACAAGGCTCACCCATTATGGCTAAGTGGCATTTACTGGTGGAATGTAGGGGTGGTTTGACATACAAAACTCAATCGATGTAACACAGCATACTAGCAGTATGAAGGAGGAGA-----GTGATCATCTCATTTTttgatgcagaaaaatcatttga

a score=13751
s chr3             7220742 685 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAAT-CAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAA---GCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAA-GCCACTATTACTCTGATACCTAAACCACAGAAAGATCCA---------------ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAA------TAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA----TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagca-atcccactaaaatcagg
s HiC_scaffold_1 131360117 685 - 233722169 AAATGGATGTGTTTCCTGAGAGATACAAGCTACCAAAactcactgaagaaaaaaatagataatttgaATAGCACTGTGTGT--TAAAGAAATTGAATGTGCAGTTA--AAAACTTTCCCAAA-ATGAAAAATCTAGACCCCGAAGGCTTCATTAGTGAATTATACCATACATTTAA-GAGGAAATAACACCAATTCTACACAAATACCTCCAGAGCATTGAAGAAGAGATAATACTTCCAATCTCATTTTATTCGTACCTGCATTATCCTGATAACAAAATCAGACAAAGACatagggggagagagagagacagagagagagagcatatAACCAACCACT-----AAACATGAATG---AAAtgcttaaaagttttaaaatttat---------atctatGA-CATATTAAAAGGATGATAAATTGTGACCTA-TGGTATTTTTCCCACATATGCAAGTTTGACTTGAAATGTGAAAACCAAACAATGTGATTCACCGTATCAATAGACTAAAAGAGAAAACCCACATGATCATCCAAATAGATGTAGAAATCGCATTAAACAAAATCTGACATCTATTCTGGATAtgtaaagaaaatcaataaattagGAAG--AAAACAATTTCTTAAACCTGATAAGAAACATCTTTGAAAAAAT----GCTAATATCATACTTACTGGTAATAGACCAAATATATTTTCCCCTAATGTCAGG

a score=26578
s chr3            7220752 2497 + 160039680 ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAG--AAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTA----GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCA--GACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT------------------------------------------AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATC-CAACACCCATTCATGATAAAAGTTCTGGAA----------------------------------------------------------------------------------------------------AGATCAG---------------GAATTCAAGGCCAat---------------------------------------------------------------------------------------------------------------------------------------------------------acctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgt-----------------------------------------------------------------------------------------aaaaatggctatc----ttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaa-----------tttgcaaattcatctggaa-------------taacaaaaaaccgagg---------atagcaaaaactcttct---caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagg----------agaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaa---gtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatca-gataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac---cgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccag---------------------tgagaatggctaag---------------atcaaaaattcaggtgacagcagatgctggcg--------------------------------------------------------------------aggat--gtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatc-cagaagaagccccaactg--------gtaagaaggacacatgctcca--ctatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtgg--tacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaac
s HiC_scaffold_1 66219401 2910 - 233722169 ATTTTTAGAAACATACACCCTACAAAGACTGAATCAGGG---AGTAGAAAATCTGAACTGTCTAATAATAAGTAAGATTGAACTGAA-CAGTAATAAAAAGTTTCCCATCAGTGAAAGGCCCGGAACTTG--TGACTTTATTCTTTACCCTACTAAACATTTAAAGAAG------TACCACTTCTTCTTAAAATCTtccaaaaaagataattaaagagAGGATACT-TAACAAGTATATTTTATATGAGCAATATCACCCC-ATACAAAAACCATCTAAGAACACTACAAAAA-AGAATACTGTATAAAACCGTGTCTCtgatgagcatagatgcaaaactt-TTGCCAGAATACTACCAAACTAAATTTAGCAgcataataaaaataccattcacTGAGAACAGGTGGGATTTATCCCTGAGATGCAAGGATTTATCCCTGAGATGCAAGGATTTATCCctgagatgcaaggatggttcagtaTACATAAATCAACAAATATGATACTCTATATTCACAAAATTAAGGACAAAAACCTATATATCATCTGAATAGATGTGGAAAAAGAATATGACAAAATCTTAACATCTTTTCTTGGTGAAGAGTCCAAAAAATTGCATGTATAAAGAATGTACCTCATGCTGGGTATGATAGTatacacttgcaatcctagcacttaggagagtgaggcaggataatcattgcgagtttgaaatcagcctggactacaaagtgaactcaagtccagcctaaactgatTACtggttagtgatttttttttgtctcaaaaagacaaaaaaaaaatagaggatttagctcagcggtgtgaagtgcctgcctggtaagtgcaaggtcgtgagtttaatccccagtacctaaaaacaaaacaaaacaaaacaacaacctgAACACCATAAAGGCTGTATATGACAAATGCATAACTGATACC--AGTTAATGGGGAAAAGTTGAaagcttttctttcatgatcagtaAT---ACAA---TATCTGATCCCATCAGTCACGTTGCCCATAGTG-TTGAAGGCTTAAT--GTGCAgtgaggcaagaaaaagaaataataggcagcta------aaaacaagaaatgaa------actgTCTGCTGAGgacattatattatata----------tgaaaacTCAAT-------Ctattaaaattgataaa----tttagtAAAGTTAAAGGATACAAA--CAGTACAA--AAATTAATACCTTTTCTATACATTGACAGGAAA----TTCTGAAAAAGATTAAGAGCACTTTAATTTACTGTAATCTcacaagaaatattaaattt------------------aaggAGGTAAAAAATCTGTATACTAAATATTATAAACTATTGATTAAATAAATTggggaagataaaaataaatggaaagatatctcatGCTAATGGACTGGAAGAATTAATGTTGCAGACCTagggactgaggatgtagctcagtgacacaagtccctgcccggcaagtgcaaggtcctgagtttaattcccagtatataaaaaaaaaaaagactattcaGACTACTCAAAGCAGATTACAAATTCAATGTAATCATTGTCAAAGTTCTA----AATTTTTTTGC-----AGGCagagaaaatatctgaaattttaaaactttgtttagAAAATATCCTAAAATTGATATGAAACTGTAGAGATCTTGCATAAGTAAAGTGGTTTTGAGCAAAAGTAACAAAA---CTGGAGGTATCATACTCCCTGATTTCAATATACTTTACAAAGGTGTTATAATCAAAAC----------------ATTGATTGACA--TTGGCCAGTGGGACAGGATAGAAAACCTAGAAATAAACCCA-GTGTTTATGACCAGGTGGcttttgacaaaggtgtcaaga-CACACAGTGGGGAAAGGATa-ctttttcaataaatgatgctgcTAGAACTGACTATCTGCATATATAAGAATGC-ATTGGATCCTTATTTCACatcacatacaaaaatcaatacaaaatatattatgaactTACACAGAAAACCTGAAACTATGAAattactaaaagaaaagaaaaaagaaggagggGGAACTCCATAGTAAT---GGCCTACAAAATTATTTTGTGCATAGATCC-CAAAAGCAAAGGCAGTAAAAGCAAGAATAAGTGAATGATATTGCATCAAACTAAAAGCCTTTCTCTGCGTAGCAAAGAa----agcaacagaatgaagagacagcc-aCAGAGTGG--AAGAATTATTTGCAA--CAATATCACTAAAATGGGCTAATACTCAAAATATGTAAGTTGCTC-AGTAGCTAGA------------AAATATGTGATTTAAAAAGTGGGCAAATGACCTGAACTGACATTTTTTA---GAAGAACACGTACAAGTGACCAACAGATAac-gaaaagatgctcaacatttctaaacatcagagaaatgcaaattaaaattgtaATAAGATATTACCTCATGACTGCTATTCCTTTTATTAGAAAGACGAAAGTAGCCAGGTGGATGCTGGTGGATACCTAGAGAAGCGGTGACTCAGGAAGCTAGAGccaggaaatttaaaaccaaCTTGGGCAACAGAGTGAGACCCCATttcagaacaacaaaaaaatgtgaaaagataaGTGGAGAAATTGAgactcttttgcactgttggtgggaatgtaaaatgttgCAGCTTTTATGGAAaacagtgtgaagattcctccaaaattaaaaacaagaattagCATTTGATCCAGTTGTCTCACTACTAGATATATATCTCAGGAAGGG----AATTGAAATCAATATGTGATGGATATATCTACCATCCCACGTTCATTGAAGCATTATTCGCAGTAGCAAGATAC-GGAAACAGTTTAG-tg-ccatcagtggatgaatggaacAAGAAAAATCTGTCTGTATATATGCAGTGGAGTACAACACAGGTTTCAGAAGGAAAA----TATGTCATTTAAAAGAGCGTATATGAGCCTGGAG-GCATGATGTTAAGCCAGG---------CACAAAGAGAC

a score=21091
s chr3             7220824 1121 + 160039680 TAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTG--------CAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGA--TAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG-AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGA-TGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaa-------accagtagccaacatcaaagtaaatggagagaagctggaa-gcaatcccactaaaatcagggactagacaaggctgcccactttctccctacctt-ttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataa-aattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatcc
s HiC_scaffold_1 102385426 1276 - 233722169 taaaaatagaaaagaaaagaaaaaaatcctcccATCAAAGAATAGCCCTGGACTAGATGGCTTCATTATTTCACTACTGAGATCTTTCAAAC-TTGTACCAAGAACTAatatcatttctgcttttataaTTCCAAAAGAACTTGAAGAGGATGGACTTCTTCCCAACACATTCTATGAGGCCAGTATTACCCCAATATCAGAATCAGACAAGGACATAACGAAGAAAACAGAGCTGTGGATCAGTatctttaatgaacataaacCCAAAACTCCTTACCAAATTACTagcaaacaaaatccaacatcaaattaaaaaagagtATTCAAACTGgggatagtggtacacacctgtgccCATAATTCCAGCGTTCagagggctggggcaggaggattgttgtgagtttgagaccagcctgggctacaaagtgagtgcaaggcaaacctgaactgcatagcacaaCCCTgttgcaaaagaatgaaaaaaaattattcaccATGATCAAATGGGACTCATCTCAAAGATATAAAGAGcacttcaatatacataaatcaataagcgTGACATAATACACCACCATAAATAATAAC--AAACCTTATAATCATATGAATAAATGCAGAAAAGGcactttataaaatttaatatct-ttCATGATAAAAGATT-----AGATATAGAAT----GACCAAGTCTCAA--ATAATAAAGGTCATATGTAACAATAGCAAGAGCAATACCAAGCATCATACCGAATAGGGGAAAGctgacatttttttcctctgagatgTGGAATGAGACAAATTTGCTCACTTTCACCATTTTTTATTCAACATTGTACTAGAGGTAGCAGGTGGAGCAGTCAGGCAAGAAAAATATACTAAGAGCATCTAAAttggaaaa---gaagtcaaattgtCACTGCTTGCAGAAAACATGATCTTACATGTAGAAAATGCCCAAA--CCCACC--AAAACTACTAGAATTAATGAGTGAATTTAGCAAAGTTACATGATAGAACAATGAATGtgcaaaaatcaatatcattggTATATATTActaatgaat-ttttaaactaGAAGTCAAGAAAGCTATTCCATTTATAATAGCCATAAGTATTTT----TATACAGGGATAAATTTATCACAG---ATGAAAGATTTCTGtaatgaaaac--caaaatgttgatgagagaaacagaaaaagct-ggAAAATATGGAAAGCCATCCTGTGTTCCTGGGTGAGAAGAATCAATGTTGT--CAATGTCCTTACTACCCAAGGCAGCTTAGAGAGCTAATGAAACCC

a score=41174
s chr3             7220846 2411 + 160039680 AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGT---TCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAA----GATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctaca--gcaaaccagtagccaacatcaaagt-aaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaac-------agcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatgg----------------------------------------ctatcttgc-----------------------------------------------------------caaaagcaatctacagattca-----------------atgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtga-------taaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc-caaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaa--------aggatctttacctatcctaaatcagataggggactaatatc-------caacatata-----------taaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctcca--ttgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggta----agaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccag-atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaa
s HiC_scaffold_1 150617897 2437 - 233722169 AACAAGCTACCAACTTAGAAAATCCTAAGACTCAATGAATTCACTGCCAGTTTTTACAAGACTAT-GGGCTAGATGTAATGCCAATGCATCTg-----agtttttaatgaaattgaaagggaatgaATCCTCTCAAAATCATTCATTGAAGTAACCATCACCAttatttcaaaaccagatgacTACTCAACCAGAA--GGGAATTATAGGCCAGTGTCT----------TCAATGCAGAAaccctcaacaagatactggccaacagaatgcataaaatcatttaaa-aatcatatataatgATTAAGTAGTCTTTATTCTAGTGATGTAGGGATGTCTCAGCATGTGGAAATTAACAAGTGCAATCCATCTCAGAACCAGAACCAAGAACAAAAAATAGATTATCATCTTAGTGGACCCAGAAAAAGTCTTTGACATAATCCAAAATTTATttatgacaaaaattttaaaaaataggtttaATAAGCTTAGttcaatatt---------aaaaatcaatttatgaTGCTTACCA----CAATCATTATATTAAAAAGGGGAGAAGTTGAAAGATTTCCTTTTAACATCAAGa---agacaaggatattcac-taCAATATTCCTGATAAATAAAACACTCAAAACATTAGTTAGcacaat--aaagataaaaagaaaataaatatatgtgaatCAAAAAGG--------TAATTATTTTTACTCACAGATGATGTTATATTCTATATAGAATaccccaagatttctacca-aaAACTAccagaattaataactaaattcaaaattcagcagtgtagctggaaacAAAATCAACACATATTAG----------TTTGATACACAAATAATAAGcccaatgagaaagaaattaggaaagtaATACTATTTATAGTAGcatctataaaaattaaatacctaagaATTAACATAac-caggaagtgaaagacctctacagcaATAATTATAGTTCTcttaaaaaggatattgaagaacacataagaaaatggaaagatacctcaT--TTCTGGA-TAGCAGAaccaatataataaaaatggacatactggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcatgagttcgatccccggtaccgataaaaatgaaaaagaccaaaaaaaaaaaaaaaatggacacacTTAAAAAATATTAGTCATACACATAATCCCAGGCAAAATAGCAATAGCCTTCCCCCA-GGACTATAGAAAACAATCTA-GAATTCATATAAAGATATAAGAGAACTAGAGgagcaaaggaaattctgagcAACATGGgtaaggcaa-------gagaatcacaatgTCACACTTCAAGTTTCATTACAATGCTATAAACAGgacatttgaaaacagaatggttctggcaaataaataaataaataaacttacgGA----TATTCAGGA---GGAATAAAGTTTGCAGACACACAGCCATCTAATCATTGGCAAAGTGGTAAAAAAATATACACTAAAGGAAAGATAGCCTGATTAGCAAATAATTCTGGAAAACCTGGCTATCAACATACAGAAGAATGAGCTGAGGACCATATTTCTAACTAACCACTaaccaaaagtaaaaatggatccaa-------atgttaaaacagaaacacttaagaTGATTGAGGATAGAATTGGTAATACTATTGAAGACATAAGTGCTAGCATGAACTTTCTGAATTGAactccaattgcacaagaaataa-attaagaact---------------attaaattaaaaagcttctttacAGTGAAGGAAACTATCAATAGAATGGAA--ACTATCAATAGAACGGAAAGACAGTCTACCATTTTTTCCAGGCATTCCTTGGACAGAAGACTAATGTCTATTCTACAGCATgtaagagcaaaaacaaaacaaagcaaaaatacaagactcacaaA--TAGAAGACCACATCAAAGAATGGG-----CAATTGAATAGACACTGCTTACAAAAAGAATTGCAAATGACC------CACATTAAAAAGTGTTT----TCATTAATGACCATT----TGAAAGTTCAAACAACAGAAAGACTCCATCTCATTCTGCAAAGagtggttatcatcaagaaataagat-ATAACAAGTGGTGGTAGAGCTTTAGGAAAA----AACGCTCATctactttgttggtggaaatgtaag-taGTAAAACAATAggggaaattagtatggagattcctcagactactaaaactagaaatgtcag-----ctagaaattccatttctagttat-catcccaaaagagttaaagacattatattacagtgatacatgcactcCAATATTTAGTGCAGTACAACTCATGATAACTAAATCTTTGAGTGGCCCATGTAGGTCTATTAACAgtggaatggata-agaaaatgtgatatttacacaaaaTTTAGTATTATTCCGCtctaaagaaggatacatttaaATCCTTTTTATGAAAATGTATA--------------CATTCTGAAATAAATAATG----CACAAAAGATCccatgaaa

a score=9938
s chr3             7220854 447 + 160039680 CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT-GTAATCCATTATATAAAC-AAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT
s HiC_scaffold_1 222209385 430 - 233722169 CTTAACCAAGAGAACCCAAAAA---------TTCACTACTGAATT-TATCAGCAATTTAG-GAATAAGTAAACTCAATACTCCTCAAAGTCTGCCAGAAAATTGCAAGGGAAGAAATACTACCAACCACATTCATCAGAGACAA-GTTACCATGATACCAAAACTGGAAaaggactcaaccaaaa----aaacTACAAATCAGCATTTTTACTGAATCTGGATACACAAATTCTCAACGGAATACTTGGAAGCAGGATGCAGCAAACCATTCAAAAGGTCATACATCTTGACCAAGTCAGCCTTGTCCTACATATGTAAGAATGACACAatatacataaaacaataaataaaaaaatattacatacatGAAATgtaaggataaaaatcacatagTCACCTCAATAAATGTGGAACAAA-ACTTGAC--TATTCAACATACattcaggat

a score=5659
s chr3           7220854 224 + 160039680 CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATG
s HiC_scaffold_1 1869309 213 - 233722169 CCCAAACATCAACACCACAGACTCAGACAGTTTTATAGACAACTTTTATGAAGGTTTCAAGGAACACAAAAGCCCTGTCTTACACAAACTGTTCCAAAGAATAGTAACAGAAGGAATTCTCCCAACCTCGTTTTATGAGGCTAGGATGACCTCGATTCC-----------AGTACGCCACCACCATGGAAAACCATAGACAGATTTCACTCGTTAGCACAGACG

a score=11955
s chr3             7220855 461 + 160039680 CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCA--------GAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCAC-TATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA--------------------------------------------------------TCCATTATATAAACA-AACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAG
s HiC_scaffold_1 109410552 519 - 233722169 CCAACCAAGGAAAGC--AGGAACTGGGGTTCCTGCTGCATTACCATTGAATTTTATAAGATAGTCAGTGGTGTTTAAATGGCAGTAATCCTGAATCCATTTAATGAATTAAAAGAGGA--GTATTT--CCAATCTCATTCATGGAAGCTAAACATTACtttgatttcaaaaccagacaaggattcAAGTAAAAAAAGTGAATTATAGACCAATTTCTTTAATCAACATGAAgtgaaaaatcctcaataagatactgactGATATAAC---AAGATATATCAAGAAGATCACACATCTTGACCAAGTTGGATTTATTCCACAGATGCAAGAGTGGCTAAATATTCAGAAATCAGTCAATATAACAAAAATTGCTTTTAGCTCTTTTGGATAAAATCAAGTGATGTAACAGTAAATGTGCTACATCACATAAGCAGAAATCAGAATGAAAAATCACACAATTATCCCTTTAAATACAGAGAAACCCTTtcacaaaatccaacattcattaaTGTTGAAACCTAAAGAAAG

a score=17433
s chr3            7220864 1189 + 160039680 AAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAAT--TTCT-CTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAAT---CATCCA------------TCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAA-GCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct----caaggataaaa
s HiC_scaffold_1 74183501 1154 - 233722169 AAATCCCCAAGCTCAGTTAATTTTCCTGAagaattctaccaaacatttaatGAAGAACTAACTCACGTTCAACACAATTTCTTccataaagtaaaacaaataagaacacT-TCAAATGTATTTTGTGAAGCTAGTGTTACTTTCCTAACAAAACCAAAG-----CTGTACAAAAA-AGAAGACTATAGACAAATAGTGCTGCTTATTTATACAAATGTCAAATTCCTTAA-AATGTATTAGTAGATAGAACTTAGCAATGTATTAAATGACTGTacaccaagtaggatttatttcaAGACCAAGCAGGATTTATTTCAGACATACAAGGCTTATTTAATAATCAAAAATCGATCAGTGTAATCTACCATTTTAACGggtt--aagggaaaaataatgtGCTTATGT-----GAGGCAGAAAAAGGCATTTGAAGAAATCCATTACCCATTCATTAAAACA---CTGAGGAAAACAGGAATAGATGGGAAAGTCCTCAGCTTGACAAAGAC-TTCTACAGGAAACCTGCTGCTAACATTGTGCTTAACAGTGAAAGACTG-----AGTTTCCTCGAAGACTGGGA--AAACCAGGATGTTTGCTCCATTATT-CTTATTCAGCACAGGGCTGGATTAATGCTTCAGTATaat-----aataaaacaagac------------aatcagaagtacagaaagaaaactgaCGCTGGTTTTAGATGACATAATTGTTTATATAGAAAACCCCAAGCAATCTACCA-AAAACTGCTGGAACTAATAAGTGTGTTCAGCAGAGT--CAGGTCACAGGGCAAAGT---AGGGACGAATCTCACTTCTGTGTACTAGCAATGGCCACGTggacaccaaaaattaaaatgcaagccATTCAAAAAttgctcaaaaca--aaaaaatacttcgGTA-GAATCTAACAGGAGATATACAGGGTTTATGTG-TGTCAGGTATAACATGCTGAAGAAAGCAATCAACGAC-ATCTAAATAAGTAAGGGAATAGGCCGTGTTCATATTTCAGAAGACGGAACATAATAAAGGTGTAAATTCACCTCAAATTGaaatacaggtttaatgcaattttTATCTTAATCCCCAAAAGATTTTTTCTAGATatagacaaaaaatttt---aaattatatccaaagactaaaaaactaaaatagtttaaatttttttgtgaaaaaaataaaa

a score=4246
s chr3             7220882 154 + 160039680 GGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCA-CTATTAC---------TCTGATACCTAAACCACAGAAAGATCCAACAA
s HiC_scaffold_1 134279657 161 - 233722169 GAGCTCACTGGTGATTTGTTTCAAACATTTGAGGAATACATCACAGCAATTTTCTCCAATTTCTTTCAGAAGACAGAAGTAGGGAGGATACTACCTAACTCATTCTAAGAGGACAGCTATCACAGTCACTTTCCTTACTGctagaaca---aaatatccaacaa

a score=66857
s chr3             7220893 2339 + 160039680 AGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACC-GAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAA-AAAGCATTTGACAAGATCCAACACCCATTCATGAT----------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatgga-----aagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaac-tcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagc--tttactacagagcaattgtgataaaaactgcatggtactggta------tagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactcc---aaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtgga----cctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatc-cttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgg-agaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctggg-catatatccagaagaagccccaactggtaag-------------aaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaa
s HiC_scaffold_1 229303709 2244 - 233722169 aaaattctacagtaaGTTCAGGGAACCAATGCCACTGATTCT----AGACTCTTTAAACAAGCTGAAGGGGAATCAGTACTTCCAAAACCATTTCTGGAAGCAACTattat--------caaaaccagagaagaacccaaccaGCAAAGAAAACTGCATACCAATCTCCCTCATGAATATAGATATAAAACTCCTCAGTAACATACTGGCAAACCAAAAttcagcaaatcaccaa---gattatacaccatgaccaagtagaattcatcctagggatgcagggCAGGTTAAACGTatagaaaacaataaagataatacaccatattaacataaacaaagacaaaaatcataaggCTATCTTAATAGATGTAAAATAgtgcatttgacaaagtccaaca-ccattcatgattagaaaaaaaaaaaactccagaaaa--ctggaatagatggtctatatctcaatctaataaaaatcatctatgataaaccaacagtt------------------------cttga--ctttcactttaaaattagaaacaacacaaggatgtctactatcacaaTTCCTACTttatataattctggaaacatt----agagcaactagacaagagaaaga----aaaagaataagggtatgaaagaaagaagttaaattatcattatttgtggatgacatgatattctacatagaagaccccaaaatctctaCTAAATGACTCCTA-------------------GTAGTGTAGTTGAatataaagtcaacattcaaaattcAGTAGCATTACTGTACACAAGCGACAAACTCATTTAGAAAG-AATCAGGGAAACCATACCCTTTACAATagcttccaa-aaaatgaaatacttaggaatcagtctaacaaaggaagtaaaagatctatatgatgaaaattacactacatgaaaaaaggaaattgaagaggatatcagaaaatggaatgataagataccccttgctcatagatagggaTAACCAGCATagtaaaaatggtcatactcccaaaattgttgtacaaATTTAATGC-ATCCTAATCCAAATACCATTATTAAaaactcacagaactagagaaaac--------aatccattTGGAAATGgagaagacctagaatagcaaaagcaattctgggcaacaaaggcaaatcag--GGCATCACactccctgacttgaaatcatttac-----------tgtggtaaaatcagcatagtactgaaaaaaaagaaaaaacagatctgatggtcagtggaacagattagaagatgcaggtgCAACCTCAAACACACTCACCCActctatctttgacaaaggaaccaaa--cattctctggaagaaagatagtatctttaataaatgatgctggaataactggctttccacatgtcagaGACTAAAATTGggtccatgtctatcaccacgtactaaattaaagtcaaaatgaatcaaaaatataaaaattaaaacaggaatactaaatttattggaagagaaGATAgatagaaatattgaagacacaggtgtatgCAGAGACTTCTTGAACAAAACTCAGATTGCACGGGAAGTACTACAAAGAAtgaac---tgggatctcat----cttttaaaaagctgttgcacagcaaaagaaataacaaatacagtgaaaagacaacccacaggttgggaaaaaat-ttagccagttgTCCATCAAACA-AGGActtttatgtagaatatatacagaattgaaaaaatcagataccctacccaaattcaaagg--cccaatccaaaatgagcctctgagatgaatacaca--tctcatatgaagaaatacaaacagcaaataaatatatgaaaaaacatttgacaTCATTTTGTCATTAGAgacacacaaattaaaacaacactgagattccatctcacattagaaagaatggttatcatcaagaaatcaaccaataagaaatgctgcaAGGGATGTggtggaaaaagaaacccttctccactgttggcgggagtatggactggtgcagccactgtagaaatcagtatggagagtcatcaaaaagc------taggattacagg---------------ttccTTTGAACCAGGTATCCAGAGGAA----------TTAAGAATATCATATctcaatgatatatgtgcactcatgtttatagcagcacaatttgtattagctaaTTCTCGGAAATAACTCAAacgcccatcaaccaaagaatggataaaacagatgtggtatttttatacaatggagtattactcaggcAT---AAAAgacaaacttgagacatttataggtaaatggatacaactggagaCCCTActtatgaatgaaataa

a score=12349
s chr3             7220895 431 + 160039680 AGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTCATGATAAAAGTTCTGG------AAAGATCAGGAATT
s HiC_scaffold_1 218541252 420 - 233722169 AATCCTGCCAAACATATAAAGAAGAATTAATATCAATGCTTCACAAACCCCTTCCAAAAATAGgaataa----tatttt--ccattttatcctaTAAGATTGATATCACTTTGATAACAAAAGTAGACCAAAA--CATTACACaaaaaaaactacagaccaatatccctTGTAAATATGGATGTAAAATCCACTAA--ATATT-------AGCAAGTCCAGCAACATAACAAacagattatataccatgaccaacttAATTT-ATTCCAGAAACGCAAGGTTGGCTTAATATATGTGAATTAGTCATCATAACATACCCTATTTGTAGCATCAAAGACAGAAACCATACAATCATCTCCGTAGATTCAAACTAAGCATTTGACAAAAATCCAACTCCCTTTTGTGATAAAAACATTTGTCAACATAAGAATAGGAATT

a score=7667
s chr3             7220903 364 + 160039680 CAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATC-------CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT---TAGATGCAGAAA
s HiC_scaffold_1 190143545 328 - 233722169 CACACATTCAAGCAATAAATTACACCACTTTTATATAATCTATTACAGAAGATAGAGACAAAGAAGA--CTTCCTAACAGACTTTTTGG-GCTAATAGtgct----------------agaaa--------------agaaaagaacagactAATCTCTC--ATGAGTTTAGATGCAAGAGTCCTCCATAAAATACTAACAAACTGAATCCGACAGTGTATAACAAGAATTATATGTCATGGCCAAGTGGGCTTTATCCCAGGCATACGTAGTTGG-TTAATGTTTAAAAACCAGTTAGTGAAATCTGAGCATCATTATCAACACAAAC----------AAATCACTTGATCACATCAGGCATAGATGCTGAAA

a score=13195
s chr3            7220912 688 + 160039680 AAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAG----TAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACT--------TCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattc-------gacaacaaaaggagatcaaggggatacaaattggaaaag----aggaagtcaaaatatcactttttgcagatgatatgata--gtatatataagtgaccctaaaaatt
s HiC_scaffold_1 57489111 619 - 233722169 aaataaaagagaataccAGTTCTG---AAATTCTTGCAAAATAATGAAGAGTTTGGAAGATGT----CTGAACTCATTTTATAAGGCTAGTGTTAC----------AAGGTTGAAAATGACACTGCAAAAAAAGACAGCTATTTGTATTTCTATCAGTATTTCTAAGAAACATAGAtg--aaaatcctcaacaaaatatagGC-------ATTCAATAACACATGAAAAGGATCATCTTCCATGCTTAAGTAAGATTTATTCCTGGGATACAAGGTAGGTTT---------AAATTAATCAGTGTATTGTACCACATTCACAGAATAAATGATAAGA--------ATCATTTCAATAGGTacag-aaaagcatttgacaaagtacAATAGCTTTCCGTGTTTAAAA-ACTGAGCAAATTAGGTAGAGAAGGAATATACCTCAGTATAAGA---------TGCACCCACCT-----CTAATACCATACTCGATGGTAAGAAG--------------------ACCAGGAACAAGACAGAGATGCCTAGTTTTATTATTGCTattcaacatgatactggaagtCTTAGCTAAAGCAATTAAGGTAGGggcaaaaaaag----taaaagacattcAAATTGTAAAGGGAAAATGAAGTCA-----------TTTGCATATAAGGTgatcttgcatatatataagacCCTAAAAACT

a score=9500
s chr3             7220933 317 + 160039680 CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC----AAAGATAGAGAACTT-------CAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT
s HiC_scaffold_1 125614813 328 - 233722169 ctcctcaaattcttcagtgaaactgaaagggatgGAATATTTCCAAACTCATTAATGGAATCCAGCATCACTCTAATACCAAAAACAGATAAAGACCgaaatataaaagatataaaatataaaaatacaagccAGTCTCCATAATGAACATTTATGCAAAATTCCTCTACAACATATTAGCAAAGAAAATGCTACACATCATCAAAGGGATAATACATTATTACCATTTAGGTTTCATTTCAGAGATGCAAAAGTGGGTCagtatacacaaataaataagttTAACACATCAAATACACTgaagaagagacaaaaaacatatgattat

a score=7809
s chr3             7220952 470 + 160039680 AGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGAT-CCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTA----ATAAA-------ATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaa-agcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaa
s HiC_scaffold_1 178899403 455 - 233722169 Agatcaaag-aaaaggaaagctccttgattctttttat-atGTTAGTATAATTCTAATACTGAAAGTCGATCAATATactaggaaaaatggaaaaaatcctAT-AATTTTCTATGCAAATAT-GATAGAAATTTTTTTATAGCATATAGCAATTGATTCTGGCT--CTGTGTTAAAAAGAATAGTA----------------TGACCTAGTGGGTTT-ATTCTAAGACCATGAGGAAGGTTCACTATTAGAAAATCTATCAATGTAATTTATTATATCAACAAATTACATGAAGAAAGCCA-ATGATTATATCAATAGTTGCCTGAAAGGCATC--ATAAAATCCAAAAGTCCTTCCCCATAAAAATCCAAGTAAGTT--ATAAATAAAGGAAACTATTTAAATATGATAGATCTTTTTCTATTCAAACTCAGTAGCAAACAGTGTAATAAACTGTGACACACTAAAATTATTTACACTAAAA

a score=12910
s chr3             7220969 503 + 160039680 ATTCTACCCAACTCATT--TTATGAAGCCACT------------------ATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT-----------GTAATCCATTA------TATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaa-tggagagaagctggaagcaatcccactaaaatcagggactagac-aaggctgcccactttctccctaccttttcaacatagt
s HiC_scaffold_1 143016731 538 - 233722169 ATTCTATCCTTTTCATTCCTCCTAAAGTCATTCGTGGAAGTAAGAATTTCATttccctgatatcaaaaccagaaaaggactcaATCAAAAAAGAGTAATATAAATGACCATC-CTCATGAATATCGGTGCAAAAATATTcattaagatactggcaaacagagtaTAGTAAATGATCTAGATTATT-TTGACCATAATCAAGTAGCTCTCGTATCAGTGATGCAGCAATGGTTCAatgtacacaaatcaataaattatcAATAAATGTGGTGTATTAACACCACATTAACAGATTCAAG--TCAGAACTACATGATTATCTCCAAAGATACAGAACACACATTTGACAAAGCCCAACAATAATTCATGAAAAAAGTCCTATAGAAAATTATaacagatggcctttatctcaatctgattaaaGCCATCAATGACAAATAAACAGTTAATATTATATCAAAGtgtcaaaaaactgaaagctttctctgtaATTTCAGGAATAAGATAAAGGGTGTCTGTTGTTTCCAATCCTATTCATTATAGT

a score=11280
s chr3             7220988 740 + 160039680 ATGAAGCCACTATT----ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacctt--ttcaacatagtacttgaagtattagcc--------------------------------agagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaaca
s HiC_scaffold_1 149604821 717 - 233722169 atgaggtcatgagtttcaaccctggtaccccccccccaaaaa--------aagaaaagaaaaccagcatCCCATATCGCAAATGAAAATAGATATAAAG-TCCTCAGTGAAATACTAACAAACTAAATTCAACTGCTTAGTCAAAGAATTATTCACTATGACCAGGTTAGATTTATTTCTGGGACATAAGAATGGCTCATAACATACAAATAAATCAGTGTAACAC---ATATTAATAG----AAAGATAAAACCCACATGAGAATAGCAACATTTGCA-CAagatcatttgaaaatttttgatATCCAGTTGCAATAAAAACTATTTATAAATTAGGAATAGAAAG---AGCTTTTGTTATCACAACTGAGATCACAAGAAAAGCCAAACGCACCAT-------AATTGATACAAGTTGAGAGATTTTCCTCTAAGACCTAGTACAGAATGAAGAGGTCC---CTCTTGCTACCTTTATTCATCATAATAATAGGTATCTTGGGTaaagaaattatacaaaaataaaaaaagaaaagaaagaaattagacaagaaaaagaagt-aaaagtatccaaattaaaaaggaagaaataaaatgatc----tcTGCAGATCACATGGTAGAA---------AACTTTAGAGattcaataacaaaaaaattgaa----ataagtaaattcagtaaaatTACAGGATACCA-------------AAATCAGTAGTATTTCTCTATACTAACAATAAATtatatcaaaagaaaactaagaaaata

a score=12447
s chr3             7221041 410 + 160039680 GAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCA---AGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacat-caaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttc
s HiC_scaffold_1 189668224 412 - 233722169 GAAAACTACTAAACAGTGTCACTTAgaaacataggtgcaaaaatcctcaacaaaatatttac-aatggCAACCAGTGGCACATGAAGACAATCATACCCCACGATGGAGTGCCTTTCGTTCCAGAGATGCAAGGGTGGTTCGCCATGCACAGATCAGTAAGTGTAGTACATCATATGAATAGAGTGAAGGGTGAAACCCACGTATTTatctcaacagatacag-aaaagcATTTGATGAAATTCGGTACCTCATCATGACCAAAGCCTTGGACAAAAAAGTTACGTACAGAAGCTTACCCCCCAATATTATAATGTCTTCATCTGGCAAACCTTCACCCGATATCCACAGTGAGTAGTGGAAAACCGAAAGCATTTCCTTTAAGgttaggaacaagacaaaggtGAGCACTCCC

a score=19254
s chr3             7221059 552 + 160039680 TCTCTTATGAAC--ATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC--AAGGCCAatacctaaacatgata-aaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgccca-ctttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaa
s HiC_scaffold_1 220736845 548 - 233722169 tctttgatGAATGTATTGATG--AAAGTGCTCATCGAAATACTAGTAAGCCTAATCCAAGAGCACACTGAAGAGATTTTTCACCATGATCAAATGGGACTCATCCAAGGGATACAAAAATGGTTCAATACACACAAATCAAagaatgtaatacactatatcaacagCATAAAGGACAGAAACCAGATGATT-TCTCAGTAGATTCAGAAAAGCCATTTGATAACATGTAATATCTCTTCACAATAAAAATgctgaacaaa--ataaattcagaagGAACATATCTCAGCATAATGTAAGGTCATTTATAGTAAACTAATGGCTAAAA--AGACTGAATGGGGAAAG--TAAAAGTTTTCTCTCCAAGATCTGGAACAAGATAAGGATACTCATCTTTCTCACT-TTTATTAAATGTAGTTCTAGAAGTCTCA-CTAGAGcagttaggcaagagaaagaaataaaaaggcatccaaataggaaaagaaaaagtcagattgttattgtttgcagatgatatgattttACATAGATAAAACCTCAAAGACTcctccagaaaa

a score=3914
s chr3             7221092 87 + 160039680 AAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGG
s HiC_scaffold_1 115439738 87 - 233722169 AGAATCCTAGCATACCAAATCCAAAAGCATCTTGAAAGAATTACATGCCCTGATCTAGTGGGGTTTATTCTTGGAATGCAAGAATGG

a score=56806
s chr3             7221142 2104 + 160039680 TGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG--ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagca-----atctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccacc--agagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa-----actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaag-gtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggctt-gtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaagg
s HiC_scaffold_1 138321675 2032 - 233722169 TGATCACATAGATTTCATCATGATGAAGGAAGAaaggttcaacatatgtaagtcaataaatgtaatgcatcccATAAACAGGAATGAGGTTACAAAAACCACACTATCATATCAGTAGACGCAGAAAAGACTTTCAAAAAAATCCAACACCC-TTTATGTTAATAGTCCTGAAGAAAGCAGGTATAGAAGGATCATACCTGAAAAtgataaacaaaaaaatatttgtaactaACCAATAGcaagcattatattaaatggggaaaaactaagAACATTTCCcctaaaatc-------agacaaaaatgtTCACTTTCGCCTCTTTTATttgacaaaatactcaaaacattagacagagcagttaggcaagagaa-------aaaaggatacattttggaaaggaatattttaaattatcactatttgcaggtgacat-------taTACAGAAGGCCCAAATAATTCCACTAaaaaaaactcttagaattaataaccaattttagcaaagtagcaggatataagatcagcacacaaaaatcattaCCATTTTTGTGTACCAACAATGACTGGGAt-agaaggaaatagagaaaatgatACCATTTAGAGTTGCTTCAAGAAAAGTGAAAGATgtagaaatcaacctaaccaaggaaataaaagacctctacaa-gaaaactatagtattctataaaaggaaactgaagaggaaATCAGGAAATGATAAGATATCCCCTGGTCCTGGACAGGTAAAACTAATATTAACAAACTGGTCATGCTTCTAAA---ACTGTACAGATGCAGTACAATTCTAATCAGAATACCAcagc-atactttacagatctagagaaaccaaCCCTAAAGTTCATATAG------AAAAGGCTCAGAATTACAAAAGTATTGTTGTTCAAAAAGATCAAAGAAT-----GTAACATATCAATACTAGACttcaaactatattacaaagccacagtgataaaaatggcTTGGTATTGGAACAAAAAGAGACATGTTGGTCAGTGGAACAGGATAGAAGATACAGAATCCTCCCCAAATGTATTCAACTATCTGATCTTTCACAAAGGAGACAAAAGCAG-TGTTGGAGGAAAG--AATCTTTTCAACAAGTGATGTGGGCAAAACTGGCTCTC----TGCAGAAGAGTG-AAACTGAGCCCTAtatatcaccatatactaaattaaaaataaaatgggtcaaagatctaaacattaa--cgCAAACATTAAACCTACTGGAAGGCGAAATAGGTAAAATACTTGAAG--ATGAGTGTAGAAAagaattttctaaacagaacttcagttgcacaagaaatatcagaaagactcaacaaatgggattacatcagact-gaaagcttctgtacagcaaaagaattcatcagcagagtgaagagataacctataGACTGAAAAAA---TTCTATCTACTTT--GCCA-------GACtaatacaaagaatata-aaagaattgaaaaaatttaaaccacCTACAATTATAT-ACttagtcaagaaatgggcaaaagAATTGGACAAACACTTCACatagaaagaaatacaaacagtcaacaaatacatgaaaaaatgttcaacatctctgaccattacagaaatgc-aattaATATAATCCTGAG---TCACTCTTCTCTGAAAAGAATGGCAATAATTAgcaaatcaagcaataacaaatgctgtcatGACTGTGTC-AAAAAAGAACCTTCCTATATTGTCTGTGGGAATGCAAACTTAGTACAATGATGAAGGTaatctgtatggagatttctcaaagaactgaaattagaaattctgtgAGATCCATCTATCCTTCTGCTAGGAATCTTCCCCAAAGA--CCTCAATTCATC------ATACAT-----ACAAAGTTTATGATAGCATAATTCATAATTACTGGTTAGTGGAGGCAGCCTCTATATGCaccaacagatgactggata-agaAAAT---CTATCtgtacataatggaatactacttggctataTAAAATGGCACATGTaagacatttataggaaaatggatatgcctggaaaatataatgttaaatgaaataaaccaaacacacaag

a score=43540
s chr3           7221142 2069 + 160039680 TGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggc-tgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaa--caacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccg-aggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcac------catgcctgacctaaagctttactacagagcaattgt-gataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaaggg-agccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaattggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtcaataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaa-atggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcatctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-----gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaagg------acacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaa----ttcctagccaaatggatggacctggaga
s HiC_scaffold_1 2194758 1974 - 233722169 tgaCCACATTGCCTTCACCCCAGGGATGAAAGGATGGCTCAAGGTACGCAAACCAATAAATATAATCTATCACACACACAGAAGCGAGGACAGAAATAATGT-ATCATCTcgatagaggcagaaaaagcttttgaaaaaatcCAAgattcattcatgattaaa------aagaaaacaggcagGAGAGGACCCTGACtcgatctgataaaagccatttaggGC--ACCTACTGCCATTATCATGTCAAACGAGGAGAAACCAAAATCTTTCTTG-TAAATTCAAGCATAGGAGAAAGCACGTCCACAGTCACGGCTCCTGCTTCACACAGTGTTCCACACATCAGCACGAGCAATCCGGCAAGAAACGGAAATAAAAGGGACATGGATAGAGAAGGAGGAACTCGAATTATCTTCATTTG---------TTctgctacatagaag---acccaaaatacCCGCCAAAAGATGTCTATAATTGATAAACAAATTCTTCAGAGGTgcaagatataaaatcaacacataaaaatcaagagcatttctCTAGACCAACCAGGAACTCGCCGAGAAAGAAATCATGGAAAGTAAATATTATTCACAATACCACCAAGAAAAGTTAAGCACTTAGGAAT-----TAACTAAGAAACTGAGACAcctctacaacaaaaa---cagtaCCCTGAGAAAGGAGACCAAAGAAGCCATCAGAAGGCGGAAAGACATCTCCTCTTCCTGGATAAGCA----CAGTACAGC--CCATGGCCgtactttcaaaactgatatagGGATCCAAAGCAATCCCGATCAAAAT---AACATCATTCTCCAGAGCACTGGAGAAGGTAGTCCTGAAATTCAGATGGAATCAGAGCAAACctcagaacagcaaaagcaattttgggtaACAAGAGTAAA----------GTGGCACCACAGATTTCAAGCTC--TCTAAAGCTACAGTTAAAACCAGCTACAGAGAAAGCCAGCATGGT-CAGGCACAGAAACAGACCTGTGACTtaacagagcagaacagaggatgcagaaataacCGCAGACACGTTCAGCTATCTGATCTGTGACTAGGGAAGCCAGAAACATACCTTGGGGAAAAGATAGTCTCCTTAATA--------------AACTGACTGTTCATGTGCAGAAGACAGT--CTAGAACCATATCTCTCACtgtgtactaaagtaaaatcaaagagGAGCAAAGATCtcaatgtgaggacagaggcatttgatctgctggaagataaaataggtaaaactcttgaaggcaaAGATGTAGGCAAGGACCTT-----CAGAACTCCAGTTGC-------------acaggaatcaacaaatggggtcaTAGCAAACTAAAAGTCTTCTGCACAGTGAAAGAAACCGtgaacagagagaagagacaacctGAATAATGCAAAAAAATTCCCAGCTACTCC---TCTGA----GAAATGATacctagaatatgtaaagaactc---aaattaAACCT----ACCCCAAACAAGGCCAATAAAAAGATGAGCCAGTGCAAccaacagacacttctcaaaagaagaaatacagatggtcaataaatacat----aaatggtcAGCATTACTGGCCATTCGATTAGCGCAACTTAAAACAATACTCAAATTCCATCCTGCCCCATAAAGAACGACctgcatcaagaaatcaaataatagcaaatgct-cCAAGGCCTCAGGGAAAGAGG-ACACTTCTACACTGTGGGCGGCAGTGTAAACTAATGC-ACCACTACGGAAATCAGTGTGACAGTTCCTCAAAAAGCCACCACTGAAATTGCac------atgacccagctattcc-cccgTAGGTGTCTTCTTACAAGAG--CTGAAGACGTAGTACAGTGATCCACACACACCCAGGAGTACCCAGCGCAG-----GTGATAAT-Gttaagtcttggaagcagcctatat--ccTTCAACAAGTGCATGGACCAAGAAAC--TGGTGTTTAAACGCCGTGG-GTACTACTCTACCagaaggaaggataaacttgggttacttgtttttaa--aaatgcatataccTTGAGA

a score=7459
s chr3             7221144 308 + 160039680 ACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA---TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttct
s HiC_scaffold_1 190943259 307 - 233722169 atcAATTGGGATTTGCCCCTGGGATGCAGG-ATGGTTCAGTCCTTGAAAATCAAACAATGTAATATCCCATACTAATAGAATCAGTGATAACAATAATATAATCATATGAATAGTTACAGAAAAGGCACTTAACAAAATTTAACACCTgcccatgattttaaaaactcagcaa--CCTAGGGATGAAAGAATATGACGTCAACTCCTCAGAATTTACATATGCAAAACCCACAGTTGCTTTCATAATTAGcagtgaaaaactgaaaac-ttttgtcTAAGATCAGAAATAACACAAGGATGggcactgttt

a score=12668
s chr3             7221217 565 + 160039680 AAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCA-AGGCCAatacctaaacatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtata--tataag------------------------------------------------------------------tgaccct--------------------------------aaaaattccaccagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcgtgactctaacg
s HiC_scaffold_1 216177554 639 - 233722169 aaagagaaacagagaaaaaaatca--tgactCTCCCAATAGAGGCAGAAAATGCCTTTGACAAAACCCAACATCCATTTATGATAACAAccttgaagaaaataggtatagattGGCCTAATTTCAATCA--GTGAAAGCCATTTGTGACCAACCTACTACCAACATCATGGCAATtgaggaaaaactgaaatttttctctctaaaatgaagaacaaga-aaggatgtccactgtcaccactcctgttcaaagtagtccttgaaacattagccagagcaattgagcaaaacaaaaaagtaaaatagatacATAT------------AGTCAAAATATCATTACTTGCAAATGACAAAATACCCTACTTACAAGCCTCAAGGGCCAGGGAGCTATCTCAGCAGCACAgacacctccctggcaagcgccagattgtgagtttgattcccactacaaaaaacaaaacaaaaaaaacctcaaaaaaattCCACGAAAAGACTCTTGGAATTAATAACCAA-TCCAGCAATGTATCAGGATACAAAACAATCACACAAAAATCcat-acattcctatacactactAATGAACTCAtt--gaaagaaatgaggaaaaaaaggattttcacaatagcatcaag------aaaacaTTTAGGAATGTTCCTTATG

a score=5925
s chr3            7501913 106 + 160039680 TATTCATGGGTCAGAACACTGAAC-TAGACATAGCTTCTCTCCTCTCTGCCATCTACTGGCAGACATGTGATATAGCAGCCACACCTGTAAGGCTTCTAGATGGCAG
s HiC_scaffold_1 39210515 106 - 233722169 TATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGG-GGCAG

a score=5490
s chr3            7646566 262 + 160039680 ACAGTTAAAGGGTTTCTCCACAGAACAAATTTTCTGATATTAGAAAAGGCCTGCCCAATGAATAAAAGCTTTTCCACACTCCTTACATTCATATGATTTTACCCCAGCAGGAGTAGCCCTATCAAACAAGGGGGGGAACTCATGCTTGAAGGACTTCTCCATGTACCTTGCATTCAAAGGATCTTTTCATTTTATGAACAACTTTATTGTTATTAA---------TTTTGCTGCAAAGAGGAAAAGCGTTTTCACAGTCTTTACATTCAAA
s HiC_scaffold_1 73252956 261 - 233722169 acattcaTATGGTTTCTCCCCGGTATGAACTCTCTGATGTTGAGTAAGACCTTCAATTTGTTTAAAGGCCTTCCCACACTGATTACATTCGAAGGGATTTTCACCAGTATGGGTTCTCATATGGTAAGTAAGAGATGAGCTATGTCCAAAGG-CTTTTCCACATTCATCACATTTATAAGGTTTCTCTTTTGTATGAGTTCTTTGATGTATAATGAGGTGTGACTTTTTGCTG---------AATGTTTTCCCACACTCATCACATTCGAA

a score=6345
s chr3             8166437 449 + 160039680 GGAGGATGAGATGAGTCTAGTCCCCTAAGGGCCGAAGC---TCTAGCTGCCTTGTCGGCTCAGTTGTTTCCTTTGGAAA------CAATAGAGTCATCTGTCTGGTGGGATCTGCAGTGGATAATTCCAATAGCTGTGGGGATATGGGAGGCCTTTATTGTGGCCATAATTAGTT-----------ACTGATCCTCCTTTTGTGTTAAGTAACCTGTGCTTCCTCCAGATAGCAGCATGGGATAGGAGGATATGAAAAGCATATTTGGAGTCTGTGTGGGTGTTGAGGGATTGTCCCTGTGCAGGTTGGAAGGCATGGGTAAAGGCTATGAATTCAGCCTCTTG---ATTGGTGGTATGCACAGGAAGGGCCTATGCCTCAACCACCTCTGTGCCTGACACTATAGCATGCCCAGGTCTTCTGGCCCCTTCATGTAGA----------AAGAGCTGCCATCTGTATACAAGGTATAGATGGC
s HiC_scaffold_1 100272062 455 - 233722169 GGAAGAAGAGG-GGTTCCAGTCCTCCCGGG----AAGCCAGTTAGGCAGCTCAATTGGCTAAAGAATTTCCTGTGGATATGGGATCAGTGGAG------GTCTGATAGCCTTTGCAGTGAAGAATGGCCACATGTTTTGGGAAAAGTGTAGCTTTAAGGATGGAGACTATCAGTTTAGCGTTTTGGATGGAGGTCCCCTTTGTGGTTAGAAGACCTCGCTCCTTCCTGATGGCAGCATGATGGTGAGTGATATGGAAGGTGTACGTAGAATCTGTGTAGATGTTTATGGTAGTTCCCTGTGCTAGGGTGAGGGCCCATATTAA-CCTATCAATTCTGCTTTTTGTGAATTAG-----TGCCTGGGTTGGGGGTTTGCCTCAATAGTGTTTTTAAGCAAGACTATAGCACATCCTG----------CTCGGAGTGGGGAGGATGTTGTGAAGAGCTTCCATCAATGAACCAAGTATATGTCGC

a score=8865
s chr3            8327525 141 + 160039680 GTAACCAAGTTGTTCCTGCTGCACAGTCCTCCCAAGTAAGCTGCGAGAAGACAGAGAACTTGTTACCATTTGTGAGATTGAATAACCTTGGCAATACTTGTTATCTGAATAGTATTCTTCAGGT---GTTATACTTTTGTCCTG
s HiC_scaffold_1 83246887 144 - 233722169 GTGATCAGGTTGTTCCTGCAGCACAGTCCTCGCCTGTAAACTGCGAGAAGAGAGAAAATCTGTTGCCTTTTGTGGGACTGAATAATCTTGGCAATACTTGTTATCTTAATAGTATACTTCAGGTAAAGTGCTAATTTTGCTCTG

a score=7673
s chr3            8327639 117 + 160039680 TTCTTCAGGTGTTATACTTTTGTCCTGGCTTTAAGACTGGAGTTAAGCACTTATTTAATATTATTTCAAGGAAGAAAGAAGCTCTAAAGGATGACTCTAATCAGAAGGATAAGGGAA
s HiC_scaffold_1 83247457 117 - 233722169 TTTTGTAGGTACTATATTTTTGTCCTGGTTTTAAGTCTGGAGTGAAGCACTTATTTAATATTATCTCAAAGAAGAACGAGGCACTAAAGGATGAAGCCAATCAAAAAGACAAggtaa

a score=12330
s chr3            8327750 164 + 160039680 AGGGAAGCTGCAAAGAAGAGTCTTTGGCAAGTTATGAGCTTATATGCAGTTTACAGTCCTTAATAATTTCAGTTGAACAGCTTCAGGCTAGTTTTCTCTTAAATCCAGAGAAATATACAGATGAACTTGCTACACAGCCAAGGCGACTGCTGAACACACTCAGG
s HiC_scaffold_1 83248172 164 - 233722169 AGGGAAATTGCAAAGAAGATTCTTCAGCAAGTTACGAACTTATATGCAGCTTACAGTCCTTAATCATTTCAGTGGAACAGCTGCAGGCGAGTTTCCTCTTAAATCCAGAGAAATACACTGACGAGCTTGCCACGCAGCCACGGCGGCTGCTGAACACACTCAGG

a score=14963
s chr3            8327911  862 + 160039680 AGGGAACTCAACCCTATGTATGAAGGATTTCTACAGCATGATGCACAGGAAGTGCTACAATGTATTCTGGGAAACATTCAAGAAACATGCCAACTCCTAAAAAAAGAAGAAATAAAAAACCTGGCTGAATTATCCAGCAAGGTTGAAGAACAATCTCTTCAGAAAGAGGAAACAGGTGGAATTACCAGCACAAAGATTGACAGTATG----------AGGAATACGGAGGA----CGTCAAAGAGCAGC----------------------------------------------------TCCCCAAAG-------GGAACTGGAAAAGAAAAAGTGACA-----------------------------------------------------------CTGAGT-------CGAGTAACGTG-------------------------AAGAAAAAGGTTAAACTGTC------------CAGGGAATCCCAAC-----------------CATTGGAAGAAAACCAGAGACAAACCA-GATCCAAGAGAAAAGCTATCAGAGA-----CACACTAGAGGCTGCTCCTAAGATCAT-------------------------------CCCCAAG------------------TGTGTTTCTGA-AAGTGAGAGTGCAAAGCCCTCACAGAAGAAA-----TCAAAAGTTAAAATAAATTGGTTAAAGCCATCCACTAAG---------CAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGGAAAATTAAC---------AACTAACCAGCGC------------------------------TCCAGAGGACAACCTAAGGAAAAGGAGGGTGAC---------GTTGAAGAGGAC--------TTGGAGAAGTATGGAAGTGACCACACAGC--TAATGGTGGACCCGAATCTCCAGG--AAGTAGCGTCACACCTGTAGAC----------AGCAGTGAAGCCA----AGTCCAGAAACAA-------------------------------------AGGTGCTGAGCAGATTGGCTTTGAGCTAGTAGAGAAACTGTTTCAAGGTCAGCTCGTGTTAAGGACTCGGTGTTTGGAATGTGAAAGCTTAACAGAAAGAAGAGAAGATTTCCAGGATATTAGTCTTCCAGTGTAAGAAGATGAGCTTTCCAAGGTCGAGGAGAGCTCTGAAA
s HiC_scaffold_1 83249543 1224 - 233722169 AGGGAACTCAACCCCATGTATGAAGGATATTTACAGCATGATGCACAGGAGGTGTTGCAGTGTATTTTGGGAAACATTCAGGAAACATGCCAACtcctaaaaaaagaag---taaaaaatgtgGCAGAATTACCTCCAAAGGTAGAAGAAC---CCCATCCGAAAGAGGAAGCGAGTGTAATGAACAGAATGGACGTGGACAGTGTGAAGAATTCTGAGGACCATAAAGAAAAACCTCCAAAAggcaatgggaaaagaaaaagtgacactGAATTTGGTAACATGAAGAAAAAAGCCAAAGTTGCCAAAGAACACCAGTCACTGGATGAGAACCAGAGACAGACTAGATCCAAAAGAAGAGCGTCTGGGGATGTGCTGGAGGGCACCCCCCAAGTGACCCCTGAGTGTGCTTCTGAGTGCCAGGGTGCACGAGcctcacagaagaaatcaagagtaAAAATAAACTGGTTAAAGTCTGCAACAAAGCAGCCCAGCATCCTCTCTAAGTTCTGTAGTCTGGGAAAACTAAGAGCAAACCAAGGCCCCAAAGGACAGTGTAAAGAGGAGGAGCATGATCTGGACAGGTCCCTGGAACGTGGCGGACCTGCCAGTGTTGATGAAGCTGACCCCCTAAGCAGAGGTACTTATGAGTCTTTGGCTCTGATAAGCAGAAGTGTTAACAGCTCCAGGAATAGAATTTTTGGGGGGGATGAATAATCTGGCTGAAATTTTTATGTAAGAATGTAATTTAACactgaatgtattttaaaaactggcttTGTGGAATGTTAATTTATGGCTAAAGAAACAAGCACATTTTAATGGGAAGGTTGTATTTTCTCTCATCTATGTAGCATTTTACATAAAACTAGAGGGAATTGCTTTCAGTCAAAAAAGACAGTGGTGTGTGGGAAAGGATGGAGG-ACTCACATTGCACGAATAAAGGACC----TCTTCATGCTAACTAGC-TAAGATATGAAGATGGGGCTTCTTAGTCATGAAGTTACTTCAGTGCAGACATGGCTCTCTACACCTGTATATATTTTCCTATTCTCATTTCAGGTGCTGAGCAAATAGGTTTTGAACTAGTGGAAAAATTGTTTCAGGGTCAGCTGGTATTAAGGACTCGTTGCTTGGAATGTGAGAGTTTAACTGAAAGAAGAGAAGACTTTCAGGACATCAGCGTGCCCGTACAAGAAGATGAGCTTTCCAAAGTAGAGGAGAGTTCTGAGA

a score=19258
s chr3            8328120 384 + 160039680 GAATACGGAGGACGTCAAAGAGCAGCTCCCCAAAGGGAACTGGAAAAGAAAAAGTGACACTGAGTCGAGTAACGTGAAGAAAAAGGTTAAACTGTCCAGGGAATCCCAACCATTGGAAGAAAACCAGAGACAAACCAGATCCAAGAGAAAAGCTATCAGAGACACACTAGAGGCTGCTCCTAAGATCATCCCCAAGTGTGTTTCTGAAAGTGAGAGTGCAAAGCCCTCACAGAAGAAATCAAAAGTTAAAATAAATTGGTTAAAGCCATCCACTAAGCAACCCAGCATTCTTTCCAAGTTCTGTAGTCTTGGAAAATTAACAACTAACCAGCGCTCCAGAGGACAACCTAAGGAAAAGGAGGGTGACGTTGAAGAGGACTTGGA
s HiC_scaffold_1 83249746 384 - 233722169 GAATTCTGAGGACCATAAAGAAAAACCTCCAAAAggcaatgggaaaagaaaaagtgacactGAATTTGGTAACATGAAGAAAAAAGCCAAAGTTGCCAAAGAACACCAGTCACTGGATGAGAACCAGAGACAGACTAGATCCAAAAGAAGAGCGTCTGGGGATGTGCTGGAGGGCACCCCCCAAGTGACCCCTGAGTGTGCTTCTGAGTGCCAGGGTGCACGAGcctcacagaagaaatcaagagtaAAAATAAACTGGTTAAAGTCTGCAACAAAGCAGCCCAGCATCCTCTCTAAGTTCTGTAGTCTGGGAAAACTAAGAGCAAACCAAGGCCCCAAAGGACAGTGTAAAGAGGAGGAGCATGATCTGGACAGGTCCCTGGA

a score=17203
s chr3            8328766 211 + 160039680 TCTGAAATTTCTCCAGATCCAAAAACAGAAATGAAGACCTTGAGATGGGCAATTTCACAGTTTGCTTCAGTGGAGAGAATTGTAGGAGAGGATAAATACTTCTGTGAAAATTGCCATCATTATACGGAAGCAGAGCGAAGTCTCCTGTTTGATAAAATGCCTGAAGTTATCACTATTCATCTGAAGTGCTTTGCTGCTAGTGGCTTGGAGT
s HiC_scaffold_1 83251306 211 - 233722169 TCTTTAGTTTCTCCAGAgccaaaaacagaaatgaagaccTTGAGATGGGCAATTTCACAATTTGCTTCTGTGGAGAGGATTGTAGGAGAAGataaatatttctgtgaaaattGCCATCATTACACTGAAGCTGAGCGAAGTCTTCTGTTTGACAAAATGCCTGAAGTTATAACCATTCATTTGAAGTGCTTTGCTGCTAGTGGCTTGGAGT

a score=82826
s chr3            8328978 1454 + 160039680 TGATTGCTACGGTGGTGGACTTTCCAAGATCAACACTCCTTTATTGACACCTCTTAAACTGTCACTAGAAGAATGGAGCACAAAGCCGACGAATGACAGCTATGGATTATTTGCTGTTGTGATGCACAGTGGCATTACTATTAGTAGTGGGCACTATACCGCATCTGTTAAAGTCACTGACCTTAACAGTCTAGAACTCGATAAGGGGAATTTTGTGGTTGACCAGATGTGTGAAATAGGTAAGCCAGAGCCACTGAATGAGAAGGAAGCAAGGGGGACGGCTGAAAATTATGACGATGAAGTATCAATTAGAGTTGGTGGAAATGCCCAGCCAAGTAAAGTTTTGAACAAAATAAATGTAGAAGGTATTGGACTTCTTGGTGGACAAAAGAGCAAAGCAGATTATGAGCTGTACAACAAAGCATCTAATCCTGATAAG-GTGGTGGGACACCATTCACCGACAATAGAAATTCTGAAACTAATGATACTACTAATGGGAACCATGAATCTGACAGGAACAAGGAATCCAGTGACCCAACAGGCATTACCATGAACGGACTTGAGAACAAAATTTCCTATGTAGTGCAAAGCTTAAAGGAGTACGAGGGGAAGTGGTTGCTCTTTGACGATTCTGAGGTAAAAGTGACAGAAGAGAAAGACTTTCTGAATTCTCTCTCCCCTTCTACATCCCCTACGTCTACTCCCTACTTGCTATTCTATAAAAAATTATAGTGAGTATATTTCCCC--TGTAAATATTAAACAGACCTGGACAGACGTTGGTAAAGTTGATTACATCTAAGAGTC-TTTAGTTTATCTTTTAAAGCTATTGGATATTATTGGTCTCTCTAGGCTTTTATATAAATAGTGAGATTTTAAATACTG-AAAACCATGTTAATTTTTAGAA-TCATTTTCCTTAGTAGAGACTAGTGATGGATAAG---CTGGGAACAAACTTGTGTAGATTCTAAATGATCCAAAATCGAAGCTTGAAACAGTTAACACTTGGATTTACATGA---------TCTTTTGTGTTTGCTTTTTAAAATAAAGTGCTTATATTTGTATTCTCCATATTTTGGAGTAATTATCTACTTGTTGTTTATAGGTCTG-GCTTTTTCACCCAAGAAAC--AATCTGATTCAGTATATTTAGTTTTATAATAGTCATGAAGCCAAATCTC---TGTGCTGTATCAGAGGCACAAAGTCTAGAATATGTATATTCA--CAATGGTGTATATTTTGTGCCTTGAATAACTTTGGAAAGTGTCTCAGAAAACCTGGCAATCCCCTCTATCTTTATAAGAATTTTATATGTATTTATGAGGATGACTCTGTACTCTAGTTAATCTTTTT-GGCATGAA-TAATTTGTATCTCTTCATAATCTTTCTGCACGATCTGTACATAGAACATC--AACTTAGAGGTGTGACC-----TTTAACTTTTTTTAAAAAACTGGGAGGTCAATAAAATTTA
s HiC_scaffold_1 83252334 1457 - 233722169 TGACTGTTACGGCGGTGGACTTTCCAAGATCAACACTCCCTTGCTGACACCCCTCAAGCTGTCCCTGGAAGAGTGGAGTACGCGGCCAACTAACGACAGCTATGGGTTATTTGCAGTGGTGATGCACAGCGGCATCACAATTAGCAGTGGGCATTACACAGCTTCTGTTAAAGTTACCGACCTCAGCTGCTTAGAACTAGACAAGGAGAACTTTGTGGTTGACCAGATGTTCGAAGTAGGGAAGCCAGAGCCACTGAATGAGGAGGAAGCAAGGGGTGCGGTTGAAACTTACGATGATGAAATGTCCTTGAGAGCTGGTGGAACTACACAGCCAAGTAAAGTTTTGAACAAGAAAAATGTAGAAGCTGTCGGACTTCTTGGAGGGCAGAAGAGCAAAGCAGATTACGAGCTCTACAACAAAGCGTCCAATCCTGATAAGCCTGCTGGTGTGGCATTCGCTGAAAGCAGAGATTCTGAGATCA---ACAGTACCAGCGGGACCCACGAAGCAGACAGGAACAAGGACTCCAGTGACCAAACAGGCATTTACATGAGTGGATTTGAGAACAAGATTTCCTGTGTAGTGCAGAGTTTAAAAGAGTATGAGGGGAAGTGGTTGCTTTTTGATGATTCTGAAGTGAAAGTTACGGAAGAGAAGGACTTTCTGAATTCTCTTTCCCCATCTACATCTCCCACATCTACTCCTTATCtgttattttataagaaattatagAGGGCATATTTTCCCTGTGTATATATTAAACTGGCCTGGCCA-ACATTGGTAAAGTTGATTACAGC--AGAGTCTTTTAGCTTGTCTTTTAAAGTTACTGGATATTATGGG--TCtctatgtttttata-aaatagtgagatttgaaatactgaaaaaccatgttaatttttagaattcattttccttcataGAGACAAGTGATTTGTTAGCTCCTGGGAACAAACAATTG---------ACTTATCCAGAATGGAAGCAT------TTCAGCCTTTGGATTtacaccagttttttttttttttttgtttgctttttagaaTAAAGTGTTTGTATTTGTATTCTCCGTATTTTGGAGAAGTTATCTAC---ATATTTATAGGTCTGTGCTTTTTCACCTAAGGAATAGAATTCCATTCAATAGATTTAGCTTCCT--CAGCCAAGAAGCCAGATCTCTGATGGGCTGTGTCACAGGCACAAAATCTAGATGGTG-GTGTTCAGGCAGGGGCATGCGATTCGTGCCTTGAATCACTTTGGAAAGTGTCCCAGAAAAACTACACGTCCCTTTTATCTTcacaag-attttatatatatttatgaaggtGATTCTGTATTATAGTCCATCTTTTTGGGCATGGACTAATTTATATCTCTTCGTACTCATTCTGCATGATCTGTATATAATACATCAAAATTGAGGGATATGAccttaaatttaacttttttt-aaaaactgggaggTCAATAAAAGTTA

a score=7675
s chr3            8351977 209 + 160039680 TACAATGCTGAAACACAGGTCCTTGTCTTTCTCTTCCCCTACTGCACCTCCTGGAGTTGATTTGATTTT----CATGTGTCCCAAACATAAAATAGCTTTGGCAACCAAGCCTGACATCAAGCTAGGGAGAACAAAGGACTACCAACTGCTCTGTACCTAACTAATATAAAA--AACACCACCTACAACCAAgtgtct-gttgcctattgccaggg
s HiC_scaffold_1 37912027 212 - 233722169 TACAATGAAGGGAAAGAGGTTTGCTCTTTaatcctccctttttgctcttattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAACA-GGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCAC---CAATGAGGTGTCTCTTTGCCCATTGCCAGGG

a score=6368
s chr3            8679355 121 + 160039680 GGGAATATTAGACTACTAATCACTCAGAAGTTCCTAGATCAGAACAC--AGCATGGACATAG-----------TCTGTCACCTACTGATACTCATGTGACACAACAACCACACCTGCATTGCCTCTAGGGGCAG
s HiC_scaffold_1 39210487 134 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=24578
s chr3             8880681 461 + 160039680 TTTTTTTTTTAGAACAACTCAGCAAAATAAAATTCCGGTTTATTGTTGGACA---TTGTTTCACACATACATCAAACAGGCCAAAA----------------------------------------------------AATAAATAAACAGCAACTTCATAGAC----AGAAAGAAAAGGAAAAAAA--ATCTTTTTATCTTTGGCCTTTTTAACCATCTCATACAAACCAACTACTTATAGTACAGCTAGGTACATACAC---AAAAGTTACTGGACTGCTCGGAATAAGATTGTTTTGTTGTTGTTGttttttttttttttttttttttCTCTCCTTTGAGATTATAATGCACATGGTCACACCACAAGTAAAGTCTGAAGTAGGACAGAAAACGCTCTGAAGGCTGGTTTGGTCACCCGTTATCATTAAAAATGGCTGACCCCTAACAATATGTAC-AAAAATATAAACTGTAAATAAAAAGTACAAACAAATTTTCCTTT-TAAAGTATTTTTAAGAAAAAAA
s HiC_scaffold_1 127512077 518 - 233722169 ttatttttttagaacacctcagcaaaataaaattctggTTTGTTGTTGGACAACACTGTTTCACACATACATCAAACaggccaaaacagaaaaaaaaaaaaaaaaaaaatcaaagtaaaacaaaacaaccaaaaaaccaaaaaaccaacagcaacttcatagattaaaaaaaaaaaaaggaaaaaaagaaatcttttctcgTTGGCCTTTTTAACCATCTCATGCAAACCAATTACTCATAGTACGGCTAAGTACATACACAAAAAAAGTTACTGGAATGCTCAGAataagattgttttgtttttg-----ctttttaaacaaggttttctttctcctttgaggTTGTAGTGAACACGGTCACACTGGTCACACCACTGGAAGGAGGACAGAGAAGGCTGCGAAGGCCGGTTGGGTCATCC-TCATCATCAAAACCGGCTGACCCCAACCAATATgtacaaaaaatataaagtgtaaataaaa---acaaacaaatattccTTTCTaaagtacttttaagaaaaaaa

a score=25661
s chr3             8881127 681 + 160039680 TTTTTAAGAAAA---AAAGCGCTTTCT------CTTCCGGTCTCGGGCGCTGCGGGAGCCGCGGGTTACCGTGCAGACACGGCCAAGTCCAAGAACCTCACCACACACAGCCAGTCCCGCAAATGGCACAGAAATGGCATCAAGAAACC-TGGTCGCAAAGATACGAATCTCTTAAGGGG--------GTTGACCCCAAGTTCCCGAGGAACATGCGCTTTGCCAAGAAGCACAACAAGAAAGGCCTGAAGAAGATGCAGGCCAGCAAGGCAAAGGCAGCGAGTGCGCGCGCGCAGAGGCCATCAAGGCCCTGGTGAAGCCTCAGGCCATCAAGCCCAAGATGCCAAAAGG------CCCCAAACTCAAGCCGCTGGCTTTCATCGCTCACCCCAAGCTTGGGAGGCGGA------TTTGAAGCTACATGGCCAAGGGTCAGAGGCTCTGTCAACCGAA-GCCTAAGGTCCA-----------------AACCAAGG-CAGGGCCCAGGCTTCAGCTCCAGCCCAGGCTCCCAAAGGTGCTCAGGCCCCCAAAGG-TGCCCAGGCCCCTGTGAAGGCCCCAGAGAAAAGGCT---CCTGCCAGTGTGAAGACAGACGGACTGCTGTGACACACCTACCCACACACTATTTGCAGATAACCAGTGTC---CTATGCTGTTCTTACAAATAAACTCAGGCAAGATCTGTTgaaagaaagaaagaaagaaagaaagaaag
s HiC_scaffold_1 232933497 720 - 233722169 tttttaaaaatacatgaaatgcttttttcttttcttctggttccaggcaCT-TGACAGCCGTGCTTTACAGTGCAGACATGGCCAAGTCCAAGAACCACACCACGCACAGCCAGTGCTGAAAATGGCAcagaaatagcatcaagaaacCCTGATTGCAAAGATATGACTCTCTGAAGAGTCATATCTCGTAAATCCCAAGTTCCTGAGGAATATGCATTTTTCCAAGAAGCACAACAAGAAGGGCTTCAAGAAAATGCAGGCCCCCAATGCCAAGGCCATGGATGCACGTGCG--GAGCCTATTGagaccctcctggagcccaggGAGGTCAAGCCCAAGATCCCAATGGGTGTGAACCACAAGCTCATTCAATTTGCCTATATCACGCACCCCAAGCTTGGGAAATGTATCCATGTCTTCATCTGCATTGCCAAGGGTCGCAGATTTTGCCAGCCAAATGCCTGGGATTTAGTTAAAGGCCAGACTCCAACCAAGGCCCAGGCTCAGGTTGCTGCTCCAACTTCTGTTCCA------GCTCAGGCTCCAAAAAGTTGCCCAGGCCCCTGTGAAGGCTCCCCAGTAAATCCTGTAActgccaatgtgaggacagaaggACTGGCGTGACCCCTAGGCTGCCATGC-AGGGGGAGAGGGCTGGCGTCCTTCTGTGTTCATCGTACAAATAAACccaaggcag-------gaaaaaaaataaaaaatacataaaacagg

a score=22169
s chr3             8881989 792 + 160039680 aagaaagaaaAGCAGGGCCTGGAAAGTTCTGGTTCTTTTTTCCTCCCATGTTGCCAATTCATGTTGTAGTTTTGGGTTTGGTGGGGTGGTGGAGAGCGCATGTCATATCTGTGGGTGGCACTGCCCGCTGTGGGCGGGC------------------------GGGGCCTGCTTCTCT-ACTCGAAGGTGAGCACGATTAAGTTCTGAGACGGGAAGTGGAGGC-GACTAGGTCACGGTGCAGTGTGTAAGGTTACTTTTCCT-TTTGCGGTCTAGTCATCCTCCTCGGTCTTATGCTTCTTGGTGTCCACATCGTCATCCTCATCATCCTCAGCTACCGGCTTTCCCACAGGAGCCTCAGCTTCCTCATCTTCATCTCCAtcctcttcctcaccctcaccttcttcctcctcctcctcttcctccccaccttcttcctcttcttcATCTACCTCATTGTCAGCCTCCTGCTCCCTATTTGCCTCATTTTGAGCGTTCACATTGGCAGGTGCATCTCTTCCGTTCTCTGCCTCCTCCACAACTTCCTTCTTCTCGTTCAAGTCCTTGGTGGTGATCTCGGAGCTGGTGTGCACTGCCGCGTCTGACATGGTGGGGCACACCAGTGGTCCGATGCCACGAGTGA----GGGAATTAAAGTCGAGTTCGAGGACTCTGGCGAGAGAGCTGCGGGAGTCCACGCTGGAGGAGGCGGTGGGCAGCGAAGGTGGCTGCAGCGAGCAGGGAACAATGCAAAGATGGCTTTTTGGAGCAGCCAGTGGGGGgcaaaaactattcttaacaataaaagaacttctgggggaa
s HiC_scaffold_1 127512585 695 - 233722169 aagaaaaaaaagcagggcctTGGAAGTTGTGGTTGTTTTTTCCTCCC-TGTTGCAAATTCTCCTGG-------AGGGCTCCCCGGGTGGTGCAGAGTG-GTGTCCT--CGGCAGGGGTCGCTGTCCGTGGAGGGCGGGGTGGGGGCGGGGTGGAGGGGGGGCGGGGGCGGGCCTCTCCCAAGTGAAGGTGACCAGGTTTAGAGCCT-AGATGGGAAGTGGAGACTGAATAGGTCACGGTggccttttta---taatttttcctgtttgcTGTCTAGTCATCCTGC-CAATCTTCTGCTTCTTGGTGTCCACCTGGTCATCCTTATTATCTTCAGCTTCCCGGTTGCTCGtagctgcctctgcctcctcctcctcctcttcatctctg------------------------ttctcctcctcctccctggcttcctcctcctcctcctctacctcaTTG-CAGGCCCTCATTTGCCATTCTCCTCGCTCC---TGTTCCCGTTGACGGGTG--TCGCGCCCATTCTCCGCCTCCTCCACCATC------------TTCAGGTCCTCGGTGGTGATCTGGGAGCTGGTGTCCAA-GCCACGTCTGACCTGGTGAGACATCCTGGTGGATCAGTGCACTGAGTGAGCAGGAAAGCGAGAGTTGG----GGGGGCTCTGGCAAGGGAGCT-------------------------------------------------GGTCAGGGAACAGTGCAAAGATGGCTTTTT-CAGTAGCCAATGGGG-----------TTCtttttgatagaa----ctgtgggggaa

a score=25117
s chr3            8929596 1584 + 160039680 TACTGAGACACAGACTTTATTAAGATTTTCACATGTAATCAAGCATAGTTTCCATTGCATCCGAG---------------CAGCAACCAGGAATGGCAGCATGTCATTTTGTGACAACCGACACTGTGGCTTTTCAATTCTGGTTTGCAGAAACCTTATCCTCAATTAAATCTAGCCATGCTCTGAAAAAG-GCTTTAGGTCACTCCAAGCTTGGCAGTTAACATTTGGCATGGACACTGGTAAAACCACAATAGAGAAAGAAGTAACAGATACAACCTCATAGGCCATAAACATACACAGCAAAGGAAGCAGGAG---TGAGTCAGGAGTGACCACAGTTAACAGAGGGGCTTAGCAGAGCCACTGGG-AAGCTTTGACTCA-CAGCCCCGACA---GTTCTTAGAGTGGGAACGATTTCTACATACAGAACAGCTCAGGCACT---AACACACTGAGAACAGAAACTGCCTGATCAGCTCAGTCATAGTAACGCCTCGCAGCTTTCGGAGTTATCAACAATCCCTTAGTATAAAAAATATTCAAGTTGTATTTCTCATAGAACTTTCTGTCCTTCCTA------AAGGTGTTAAATGGATTTAATGGAGGCAGTAAT--TTCCCC--TATGGTGAATTTTTTTTAGCATTTTTATAACTGTATAGACCTAAAGACGTTTAGACTTTTGGAATTATCAGTGATGAATGTGGGAACATTCCAACTTACTGTAATATCATATACTTAACTCACAATGTTATT-------CTCTCAATTTAC-CTGAAATTAAA--------------------------TTTTAAT---------------------------CTTGTAAAA---------------------------------------------AAATGTGTGAGAATGG------------------------------------TATAA-------------TAAATAACTGATA--------------------------------------------------------------AGCATATTTGAGCTC-----------------------------AAATAGATGTAGCTACAAATGACAGTTACCAAGGCAAGAGCAGGACCCACACTCTCCCCA-CTGGAAGTTTGAGTGTCTGCATGT------------TTTTAATTTACAGAACTATAGAACT---------------GCATACACACCTGTCTACTTTAGTCTGGTGTCTTTA--GAAACCCAAGATATGGTCC---------------------------------TCACAGAACTGTTTATCC----GAGAAAAAAAA------------------TGTAGCTGGTAGTTTCTCCTTTGAAAGGAATG-AAATAA----TTCCAAGACTTTTAATAACCAGAATTTAGAAA------AGGACAGTTT--GTTAGAAATTGATTAAGTGTACAGAGACCCAAAAACAATGATTCATGTAGATAGTAAAGAAAGATCAAACTAGAATC----CAGATGTACAGTGATTTTAAGGAGAAACACAGTAGTTGCCTGCA----------------------------------GGGATCTACCAGAGGCTC--TATG-----------------------------------------------ATGCTGTTTC----CTATACAAAGGGCCTTCCATGCATGCTAACAGTGTTTCCCTGGAGTGGAGGTC-AAGTGATTTCACTTTGTTTCATTCATCAACTATTTGGTCAAAGAAATAAGTAAAGCTAAATAAAAGCACATCTGGTGGAAATCCGCAGCCATGAGCGTTGTCAAGATGTACTTGGCTCTCGCCGGCAGCACCTGGCAGTGGGCAGCAGGACACAGGTCGGCAGCTCAGGGGCTCTCTGTCATCTGTTCTGGAGGAGGCTCTGTGGTCATGGTACTGGTAGCGTTGGCTGTGGAATTCAGGACTTCTCCAAAATCGCCGCCAGCAGGCTTGGCTCCTCCTACTTTAGACTTTTT
s HiC_scaffold_1 58006813 1966 - 233722169 tactaatatgCAGTATTTATTAAGTTCTGCAAATGTAATACAATAGAGTTTAAATTGCATCCAAAGTGCTAACAAAAGTTCAGCAATCAAGAACAGCACCATGTCATTTTATGACAATCAAAACTGTGGCTTTTCA----------GAAGAAA--TTATCCTCAAGTAAATCTAgtcaagcttttaaaaattgcttagGGTCACTCCAAGCTTGGCAATTAATATGTGacataaacaatgaaataatCAC--TTGAAAAA----TAATAGAGACAACATTGTGAGGCATAAACATACAGCATAAGGAAATGATGAGGTACTAGTCAGTGGTTATCAGAGTAAGGAGAG-----TATCCTGGCCTCTGTGCAGGCTTGGAGTCAGCAGCCTGGACACTTGGTTTCAAAGTAGGAGCAATGCCTGCA---GTATCATTTCTACCACTGCAAACAAGTCGAGAA-----------TGATgaattgatttttattaataaattacaTCCTCAGGAATTATCACCAATGTCTCTATATAAGAA-TGCTCAAGTTATGCCAGTCATATAACTTTGGAcacttcttattttaaaaggtaCTAAATGGATTAAACGGAGATAGCAATGATTCCCCAACATGGTTGATCTT----ACCATGATTATAGCTCTTAAGACCTAAAACACTTCAGGCATTTGACCTGAACACTGATGAGCATGCTCATATTTCAACCTACTG-------ATATGCTTGACTCA--ATATTACCTACTCAACTGTCAATTTATTCTgaagtttaaagaagaaatatttttaaaaaaattttttttagtaccggggatcaaactcacaactgcgtgcttgcaaggcagacacttatgccactgagctaaatccccagccccaaattttttaaatttttgagacagggtcttgctatgcagttcaggctggccttgaactcactacacagcccaggctgtcTAACTCactgaaattctcctgcctcagccaccccagAGCTGGGATTAGATGTGTATGCCACCACATCCTGCTGAAATCAAATTTTAATACTGTAAAAAGTCAATATAAGTGGCAGAATGAAATAGTTTTAGTCACAAATGGCAATCAACAAAGACACAGGGAGGCCTCCTCTCAAGTCATCCAGTACTTGGAATTACTGTACATAGTGCCACACAATTATAATAAATCGAATT-TAGGGCTATTTTAGGATGTCTGGCATCCTCACCTTGAAACAGTGTTCAAAAGCCTTTGtgggagctgaggatttagctcagcggcacgagtgcctgcctggcaagcgcgaggtcatgagtttgatcccccatatgaaaaaaaagacatgtaCACAAAGGTTTTTGTAGCTGGTAATTCTTCCCTTAAATGTATTGGAAATAAAATGCACTGAAACTTTTAATAACCAGattcaggaaatttaaaagaacaaCTTTAGTTAGGAATC----AAATATACagagtcaaagaag---------------------aaaaaaaatcat-ctggaAGCATCTCAGATTAAGAGCAATTTTGTAAAGTAGGAAAGCAACTATGAGCACCTAAGGCTTCTCAGATCATTCTAGCAAGTCTCCTGATTCTACctgtgtctcactatgtagttcaggctggccttgcactcgcttgaagcccaggctgccctcaaattctgcctcaacctcccataAAAGACCTTGAGTGCACATACAGGGCGTTTCCTGGGAGTAGAGGTGGAAGGAATTTCATTTTGCTTAATTCA----CAATTTGGTCCAAGAAATATGTAAAGCTAAACGGAAGCATATCTGGTAGAAATCCATGGAAATGAAAGCTGACAACATGTGCTTGGGCCTTGCGGGCAGCGTCTGATCCTAGATAGCAGAAAGAAGGCAGGACTCTCGCGGGCTCTCCTGAGTCTGTTGTAGAGGTGACTCCACAGGAGTGGCACCAGCATTTTCAGCT---GAACTCCAGGCTTCTCTAAAAT------CAGCAAGGCTGGTTCCCTCTACTTTAGACTGTTT

a score=6449
s chr3            8947487 140 + 160039680 TTGCCGTCACGTCTTGCCACCCTTTGGCAATGTTCTGCTTGAACTCCTGAAGCGAGGAGATGCCGAGCTTCCGCTTGAGCTCGGCGAGATGCTTCTCTTTTGCGGCCAATACTTGGGACAGAGTCTGGATTTCTTCTTCC
s HiC_scaffold_1 58008931 131 - 233722169 TTGCCTTCACATCTTGGCACCCTTTGGCAATGTTCTGCTTTACCTCCTGCAGTGATCCCATCCGAAGTTTCTGCTTGGTCTCTGCTAGATGCTTCTCTTTAGC-------ACTTGAG--AGAGTCTGTATACCTTCCACC

a score=5556
s chr3            8953671 129 + 160039680 TACGTCCCTCACCTTAGTAAGCTCCCGCCTCAGCTCCTCTTGCTCCTCTTCCGTCAGCGCCTCTGGAGCACTGAGCATGGTAACAGCATCCTCTCCTTCCTCGGCCACCGGCTCTGTCTTCAGCAGACC
s HiC_scaffold_1 58009049 127 - 233722169 TATACCTTCCACCTTTGTTAGCTCTCTTCCCAGCTCATCTTGCTCCTCTTCTGAGAGAGTCTCTGTGGCGCCGAGCATGGCTGTAGCATC--TTTCTTCCTCCAGTACTGGGTCTTTCCTAGGCAAACC

a score=26710
s chr3             9072718 651 + 160039680 CTTCCGGTCTCAGGCGCTGCAGGAGCCGCGGGTTACCGTGCAGACACGGCCAAGTCCAAGAACCACACCACACACAACCAGTCCCACAAATGGCACAGAAATGGCATCAAGAAAACCCGGTCGCAAAGATACGAATCTCTTAAGGGG--------GTTGACCCCAAGTTCCCGAGGAACATGCGCTTTGCGGAGAAGCACAACAAGAAAGGCCTGAAGAAGATGCAGGCCAGCAAGGCAAAGGCAGTGAGTGCGCGCGCAGAGGCTATCAAGGCCCTGGTGAAGCCTCAGGCCATCAGGCCCAAGATGCCAAAAGG------CCCCAAATTCAACCGGCTGGCTTTCATCGCTCACCCCAAGCTTGGGAAGCGGATTCG------AAGCTACACGGCCAAGGGTCAGAGGCTCTGCCAACCGAA-GCCTAAGGTCCA-----------------AACCAAGG-CAGGGCCCAGGCTTCAGCTCCAGCCCAGGCTCCCAAAGGTGCTCAGGCCCCCAAAGG-TGCCCAGGCCCCTGTGAAGGCCCCATAGAAAAGGCT---CCTGCCAGTGTGAGGACAGACGGACTGCTGTGACAC----ACTTCCCCACACACTATTTGCAGATGACCAGTGTC---CTATGCTGTTCTTACAAATAAACTC-AGGCAAGATCTGTTAAaaaaacaaaaaaaaaaaaaaac
s HiC_scaffold_1 232933530 684 - 233722169 cttctggttccaggcaCT-TGACAGCCGTGCTTTACAGTGCAGACATGGCCAAGTCCAAGAACCACACCACGCACAGCCAGTGCTGAAAATGGCAcagaaatagcatcaagaaacCCTGATTGCAAAGATATGACTCTCTGAAGAGTCATATCTCGTAAATCCCAAGTTCCTGAGGAATATGCATTTTTCCAAGAAGCACAACAAGAAGGGCTTCAAGAAAATGCAGGCCCCCAATGCCAAGGCCATGGATGCACGTGCGGAGCCTATTGagaccctcctggagcccaggGAGGTCAAGCCCAAGATCCCAATGGGTGTGAACCACAAGCTCATTCAATTTGCCTATATCACGCACCCCAAGCTTGGGAAATGTATCCATGTCTTCATCTGCATTGCCAAGGGTCGCAGATTTTGCCAGCCAAATGCCTGGGATTTAGTTAAAGGCCAGACTCCAACCAAGGCCCAGGCTCAGGTTGCTGCTCCAACTTCTGTTCCA------GCTCAGGCTCCAAAAAGTTGCCCAGGCCCCTGTGAAGGCTCCCCAGTAAATCCTGTAActgccaatgtgaggacagaaggACTGGCGTGACCCCTAGGCTGCCATGCAGG-----GGGAGAGGGCTGGCGTCCTTCTGTGTTCATCGTACAAATAAACccaaggcagga------aaaaaaataaaaaatacataaaac

a score=3613
s chr3            10012634 84 + 160039680 CCACCATGGCCAGTCTTAAGGATCTCGAAGGGAAGTGGCGCCTGATGGAAAGCCACGGCTTTGAGGAGTACATGAAAGAGCTAG
s HiC_scaffold_1 135513179 84 - 233722169 CCACCAAGGCCACTGTTCAGCAGCTGGAAGCTAGGTGGCACCTGATAGACAGAAAAGGCTTTGATGATTAGATAAAGGAACGAG

a score=6478
s chr3            10014986 151 + 160039680 TAGGAAGATGGCTGCCATGGCCAAGCCAGACTGTATCATTACGTGTGATGGCAACAACATCACGGTCAAAACCGAGAGCACAGTGAAGACGACTGTGTTCTCTTGTAACCTGGGAGAGAAGTTTGATGAAACGACAGCTGATGGCAGAAAA
s HiC_scaffold_1 135513411 151 - 233722169 TAAAGAAATAGATACAATAGCCAAACCAAATTGTGTTATCACTTGTGACAACAAAAACCTCACCCTAAAAACTGAGAACACTTTGGAAACAACACAGTTTTTTTGTACCCTGGGAGAGATGTTAAAAGAATCTAGGATTGATGGCAGGAAA

a score=15046
s chr3            10088299 216 + 160039680 TTAAAATGGAGAATGATGAGTCAGTGAAGGAAGAAAAATCTGATTTAAAAGAAAAGTCTACAGGAAATAAGAAGGCCAATCGGTTCCATCCTTATTCAAAAGATAAGAATTCGGGCACTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGTTCATTAGCAACATACCCTATGACATGAAGTGGCAGGCTATTAAAGATTTGATGAGAGAAAAAG
s HiC_scaffold_1 192169096 216 - 233722169 ttcataGGGAGAATGATGGATCGGTGAAAGAAGAGAAATCTGACTTAAAAGAGAAATCCGCAGGAAATAAGAAGGGCAATCGATTTCATCCGTATTCAAAAGACAAGAATTCAAGCACTGGTGAAAAGAAGGGTCCAAATCGCAACCGGGTTTTCATTAGCAACATCCCATATGACATGAAATGGCAAGCTATCAAAGACCTCATGAGAGAAAAAG

a score=5374
s chr3            10088513 68 + 160039680 AGTTGGTGAGGTTACATACGTGGAGCTCTTTAAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGG
s HiC_scaffold_1 192170528 68 - 233722169 AGTCGGTGAGGTTACATACGTGGAGCTCTTTAAGGATGCGGAAGGAAAATCAAGGGTAAGTGCTGTGG

a score=8051
s chr3            10088575 96 + 160039680 GCGTGGTTGAATTCAAAGATGAAGAATTTGTAAAGAAAGCATTAGAAACTATGAACAAATATGACCTTAGTGGAAGGCCTTTGAATATTAAAGAGG
s HiC_scaffold_1 192171859 96 - 233722169 GTGTGGTTGAATTCAAAGATGAAGAATTTGTAAAGAAAGCACTAGAAACTATGAACAAATATGATCTTAGTGGAAGACCCCTGAATATAAAAGAGG

a score=12797
s chr3            10088668 194 + 160039680 AGGATCCGGATGGAGAAAATGCTCGCCGGGCACTGCAGCGAACAGGAACATCATTTCAAGGATCACATGCCTCCGATGTGGGATCTGGGTTGGTGAATTTACCACCTTCCATTCTCAATAATCCAAACATTCCTCCTGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGGTTCCACAATTTTTGTTGCTAAT
s HiC_scaffold_1 192174629 194 - 233722169 AGGACCCTGATGGAGAGAATGCCCGTAGGGCACTGCAGCGAACAGGAGGGTCCTTTCCCACAGGCCACGCCCCGGAGATGGGGTCCGGGTTGGTGAACCTACCACCGTCCATTCTCAATAACCCAAACATCCCCCCTGAGGTGATCAGTAACTTACAGGCTGGTAGACTTGGTTCCACAATATTTGTTGCTAAT

a score=11212
s chr3            10088835 185 + 160039680 CTTGGTTCCACAATTTT--------TGTTGCTAATCTTGACTTCAAAGTTGGTTGGAAGAAATTAAAGG-AAGTGTTCAGCATAGCTGGAACTGTGAAGCGAGCTGATATTAAAGAAGACAAGGATGGCAAGAGCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAAGCAATTTCCAT
s HiC_scaffold_1 192175833 191 - 233722169 ctttgttacataattttatacaatttcaTGTTAAGCTGGACTTCAAAGTTGgttggaagaaactaaagggaagtGTTCAGCATAGCTGGGACTGTAAAGCGAGCAGATAT--AAAGAGACAAAGACGGCA-GAGCAGAGGAATGGGCACGGTCACTTTTGAGCAAGCAATTGAAGCCGTGCAAGCGATTTGTAT

a score=6090
s chr3            10089016 116 + 160039680 CCATGTTCAATGGGCAGTTTTTATTTGATAGACCTATGCATGTGAAAATGG--------------------------------------------------------------------------------------------------------ATGACAAATCTGTCCCTCATGAAGACTACCGTTCACATGATAGTAAGACATCACAGTTACCACGT
s HiC_scaffold_1 192176554 220 - 233722169 CTATGTTCAATGGGCAGTTTCTATTTGACAGACCCATGCATGTGAAGATGGTGAGTGCCTCTGTGTCACTTAACTCTCCAGCCACTCGGACTTTATCAGCATTAACTTCTTTTAGATAATATCGTGACCAAATGGTAAACTTTTTTGCAATTAGGATGACAAGTCTGTCCCTCATGAAGACTACCGTTCACATGACAGCAAAACACCACAGTTGCCACGT

a score=8630
s chr3            10089130 104 + 160039680 GTGGTCTTGGAGGCATTGGAATGGGACTTGGTCCAGGTGGACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGGTGTAATGGGAAATTTGGGTCCAAGTGGT
s HiC_scaffold_1 192181377 104 - 233722169 GTGGTCTTGGTGGCATTGGAATGGGACTTGGTCCAGGCGGACAGCCTATCAGTGCCAGCCAGTTGAACATAGGTGGTGTAATGGGGAATCTAGGTCCAAGTGGT

a score=4560
s chr3            10089231 53 + 160039680 GGTATGGGAATGGATGGTCCGGGTTTTGGAGGAGTGAATAGAATTGGAGGAGG
s HiC_scaffold_1 192182866 53 - 233722169 GGTATGGGAATGGATGGCCCAGGTTTTGGAGGAATGAATAGGATTGGAGGAGG

a score=5557
s chr3            10089281 86 + 160039680 AGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCCGAATGGGAGGCGGCAGCATGAGCG
s HiC_scaffold_1 192183205 86 - 233722169 AGGCATCGGGTTTGGTGGCCTGGAAGCAATGAACAGCATGGGAGGATTTGGTGGAGTGGGCCGGATGGGAGGTAGGTGCCTGCGTG

a score=15409
s chr3            10089350 268 + 160039680 AGGCGGCAGCATGAGCGGCATGAGCACTGTGACTGGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGGGGCCAGGCATTGGAGCCATACTGGAAAGGAGCATCGATGTAGACCGAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGAGAGACAGATTAGGCTCCAAAGGCAACCAGATATTTGTTAGAAAT------------------------------------------------------------------------------CTTCCTTTTGACTTGACTTGGCAGAAATTAAAAGAGAAATTCAGCCAATGTGGCCAG
s HiC_scaffold_1 192188892 346 - 233722169 AGGCGGCGGCATGGGTGGCATGAGCAGCGTGACAGGAGGCATGGGCCTGGGCCTGGACCGCGTGAGCTCCAGCTTTGACAGAGTGGGCCCAGGCATCAGCGCCATCCTGGAGAGGAGCATCGACGTGGACCGCGGGTTCCTGTCCGGGCCCATGGGCAGTGGGCTGCGAGAGCGCATGGGCCCCAAAGGCAACCAGATATTTGTCAGAAATGTAAGGGAATGGGTGGCAGGGTGCTCACATGGCGTGTTCCCTCGGTGTATGCGTCACTaatgtctctttttattctaGCTGCCCTTTGACTTGACTTGGCAGAAACTGAAGGAGAAattcagtcagtgtggtgag

a score=10791
s chr3            10089784 417 + 160039680 CTAAGCCATCAGACTTCAAAAATTCTGTAATTATGTTTTATGTTAAGAGTGACACTTATTTAAAGCTTACCAGTAAATTCGGTTGTCAAATATTATGCCAAAAACTGCTCCTACACTAACTGCATACACTGCACAGTCTCGGAAGAGGGGCCAGCAGGAGAGTGTTGAAACC--TGGAAAATGATGGTTTGAT----TTACTGTGTGCATTACAGTGTAAGGCATTCAAGAACAG-----TGTATAATACTGAAATCA--CGTATATTTGTGGTAAACTATTGTTAAGTTTGCATATTACGTAGAGAAAAACAATTTTAAAGTAA-AATTGTATATAAACCTGTACTGACTTTTATAAATTTCATTAAGAGATGCTTATGGATTATGTCAATTGAGTAAATGTTTTTCTAGTGGTTATTAAATTTGACTGA
s HiC_scaffold_1 192200328 402 - 233722169 CCAAGCCATTGGACTTCA----TGCTCTAGTTAGGTTTTATAG-GGGAGTCACAGTAATTTTGCACTTACCAGTAAACTTTGTTGTCAAATATTATGGCAAAAAGTGCTGCCGCGCTCACAGTGTACGCTGTGCAGTCCCTGAACAGAGGCCAGCAGGACAGTGGTGAGACCTGTGGACGAGAGCAGCTTGTCCCCACTGCTGTGGGC-----------AGGGAATCCAGCATGGGGGGTGGTACACTGCTGAGGCCATTTGCATATT-----AAAGCTGTTACC--TTTTGTGTATTGcttagagagaaagaaatctgGAGGAATAATTGTTTCTAAACACACCCTGACTGATACCAATTGGAACAGGAACTAC---CAGGTTACCTAAATTGCATAAGTGCTTTTCCACTG---ATTAAATGCGATTGA

a score=5456
s chr3           10182388 168 + 160039680 TTTCTGTTGTCAGCTGTGGTTTCATCAAACTCCTGGCCCAACTTGAAGGAGATCTCTGTATTTTTAAAGGCACTTTCCGTTCTAATGGTGATATAATCCCCCTTTTTGCTGATGATCACAGTAGGCTTGGCCAAGTTTCCCAGTTTTCTGTTGGCTAACCCCACACCT
s HiC_scaffold_1 61536855 168 - 233722169 TTTCGGTCGTCCACACTGATTTCGTCAAACTCCTCCCCCAGAAAGAAGCTGATCTCCGTGTTCTTGAACGTGCACTGGGTCCTGATCACCACCCGGCCGGCCTCCTGACTAATAATCACTGTGGGCTTGGTCACGTTCCCCACCTGCCTCGTGGCAAAGCCCAGGCCT

a score=4066
s chr3           10194667 187 + 160039680 CAACTAACCTTCACTTTTCGGTTGTCTGCAGTGGTCTCTTCAAATTCTTCCCCCAACTTGAAAGAGATCTCCGTGTTCCTGCATGCACTTCCTGCTTGGATGTCCATCCTTTCCCCATTGAAACTAATACTAACGCTTGGCTTTATTAAACATGCGACTTTCCGGGGCTCACATTCCACTCCTGGGG
s HiC_scaffold_1 61536841 186 - 233722169 CAACAGACTTACACTTT-CGGTCGTCCACACTGATTTCGTCAAACTCCTCCCCCAGAAAGAAGCTGATCTCCGTGTTCTTGAACGTGCACTGGGTCCTGATCACCACCCGGCCGGCCTCCTGACTAATAATCACTGTGGGCTTGGTCACGTTCCCCACCTGCCTCGTGGCAAAGCCCAGGCCTAGGG

a score=6109
s chr3           10205955 170 + 160039680 CTTCCTGTCGTCTGCGGTGATTTCATCGAATTCCACGCCCAGTTTGAAGGAAATCTCGGTGTTTTTAAAAGTACTCTCTGACCGGATGGTGACCAAATCCCCATTTACGCTGATGATCATGTTGGGCTTGGCCATGCCTGCCACTTTCCTTGTGGCAAAGCCCACTCCTA
s HiC_scaffold_1 61536854 170 - 233722169 CTTTCGGTCGTCCACACTGATTTCGTCAAACTCCTCCCCCAGAAAGAAGCTGATCTCCGTGTTCTTGAACGTGCACTGGGTCCTGATCACCACCCGGCCGGCCTCCTGACTAATAATCACTGTGGGCTTGGTCACGTTCCCCACCTGCCTCGTGGCAAAGCCCAGGCCTA

a score=13957
s chr3            10232181 286 + 160039680 AGAGAGGGCA--CCCCCTGACCAGCAGAGCCTCATCTTTGCAGGCAAGCAGCTGCAAGATGGCCGCACCCTCTCTGATTACAACATCCAGAAAGAGTCAACCCTGCACCTGGCCCTCCGTCTGAGGGGTGGCTATTAATTATTCAGTCTGCATTCCCAGTGGGCAGTGATGGCATTACTCTGCACTCTAGCCATTTGCCCCAATTTACGTTTAGAAATTACAAGTTTCAATAATAGCTGAACCTCTGTTAAAAATGTTAATAAAGGTTTTGTTGCATGGTTaaaaaaa
s HiC_scaffold_1 117699751 267 - 233722169 AAAGAAGTCATTCTCCCTGAGTAGCAGAGGCTCATCTTCATTGGCAAGCAACTGGAAGATTGTGGCACTCTTTCTAACTGCAACATCC----AGAGTTCATTCTGTACCTGGTCCTCCATCTGAGGGGTGGCTGCTAGTTCTTCA----GCATCCC---------ATGATGGTAGTACT-TGCACTATAGCCATTTGCTCCAATTTAAGTTTAG-AATTACTAGCTTAAATAATAGCTGAACCTT--TTCAAAATGTTGTTAAAAGTTTTGTTGCATGGTTTAAAAGA

a score=4509
s chr3           10250039 178 + 160039680 CTTGCTTTTGCGGCCACTTGGTGTGGTTTCCTCAAACTCCTCTCCCAGCTTGAAGGAAATCTCCTTGTTTTTAAAGATGCTTTTGGTTTTAATGGTGATCAGATCTCCGTCTGTGCTGATGGTCACAGTGGGCTTTGCCAGACAGCCCAGTTTCCTGCTGGCTCTTCCTACTCCTGGG
s HiC_scaffold_1 61536848 178 - 233722169 CTTACACTTTCGGTCGTCCACACTGATTTCGTCAAACTCCTCCCCCAGAAAGAAGCTGATCTCCGTGTTCTTGAACGTGCACTGGGTCCTGATCACCACCCGGCCGGCCTCCTGACTAATAATCACTGTGGGCTTGGTCACGTTCCCCACCTGCCTCGTGGCAAAGCCCAGGCCTAGG

a score=22623
s chr3            10510015 670 + 160039680 TTAGCAAACAAGCTTCTATTCATTAAATAATACTGCAAAATAGATATAACAACATTTACTTATTGTGTTAAGAGTGAGGACTTTTG--------GAACCAAGCTACCACACTAACTGTATGCATCCCCAAAGTCTAGACATACAAAAGGATATTCAGTTAGAGTTTCCGAAATCAGTGAACCTGGCTAACCCTGTATCC-ACACTCATTCTACACTTGTGTAATCCAGCCATCTTGTTCTTGTGACAGCTGTAGAATGAATCT--CTCTTCATTACACCATACAGATTGTCATGGTGTATATGCTGTGAACAGATTTATATACAAGTCGAAGTGTATCCT------TGTCTCTATTATTTAACTTTACCACCTTATCCTTTTTGTACAGTGGCAAG--------CACAAAGTTCAGCGTTTACTTAAAGAGTTTGTATACATTTTAGGCATCTAGAGCCAGATTTTATATTGGTAGTTACTGAGGGCAAAAGCAATAT-TTGTAACAGGATGGCTAATTA--TTTGATAAAATAGTCTATATTTTCGAAACGGTATTATAACAAACACTAAAGATGAACCCCAACACTATT-ACAACCATTTGGTTGATTAC--TCTGCATGTCTAC-AGAGGATCCACTTGTGGTGGCTTATTATCACTCTTACGGTATGCCCCTTTGCAAATCATAGCCTTCACTTGGct
s HiC_scaffold_1 104804166 678 - 233722169 TTGCCAAACAATTTCTTGTTTATTAA----TGCTG--AAATAGGAACATCAGCATTTACTTAAAAcatta-gactgaggacttctGATTAGCCTGAATCATGATACTGTGTTGCCTGTGTGCATTCCCAAAGTCTAGACACC----AGTCTGTCCAGTCCTGTCTTCT--AGTCAGTGAGC-TGATTGTCCCCTTTTCTGATATGTATTCTACAGTTAC-CAGCCTAGTTTATTTGTACTTGTGTCTGCTGTAGAACCAAGCTGTATCTTTGTTAAATCGTAGGGATTATCATTGTATACATGCTGTGAACATGTATATGTGAAAGTTGTAATGTATTCTGTAATGTAGgcttcttatttaatttcaccaCTTCATCACTTTTGTACAGTGGCCAGGCAGACACCTCAAACTCCAGCATTTACATTAAGTGCATTTGTATATTTTAGGCCACTGGATCCAGATTTTATATTGGCAGTTACTGAGGGCAAAAGCAATATATTGTAAcagaatgtataaatatttttgataaaacagtctatattttataaaaaatattat----aacacTAAAGCTGTACCTCAAAagtctcaaaaataatttgatCAAATACTTTTTACAATTCTTCAAGAGGATCCGTTT---GTGGCTTATTA-CACTCTTACAGTATA-TGTTTTACAAATCATGACTTTCCATTTGCT

a score=3760
s chr3            10874061 78 + 160039680 TCATCAAACAAGGCCCTAGACATCTCCTGGCATTTTCATATTCCCTACTACCCTCAATCTTCAGGTAAGGTAGAAAGA
s HiC_scaffold_1 212359433 78 - 233722169 TCACCCAGCAGGTGTCTACACATTGCATGGCCTTTTCACATCCCATGTTACCCACAGTCTTCGGGAAAGGTAGAAAAA

a score=4032
s chr3           10874075 210 + 160039680 CCTAGACATCTCCTGGCATTTTCATATTCCCTACTACCCTCAATCTTCAGGTAAGGTAGAAAGAACCAACCACTTTTTAAA--AACTACTCTTGCTAACCTGTCATAGGAACTTCACCTTGATTGGGTAAAACTCCTACCTCTAG------CTCTTTTCTGTCTATGAACTCTCCCCAAGTGACCACTCCTCCTCTCACCCTTTGAACTCATGTATGG
s HiC_scaffold_1 25987904 207 - 233722169 CTTAAACATCTCTTGGCATTTACATATACCGTATCATCCCCAATCCTTGAGAAAAGTTGAAAAGGCAAACAGACTTCTAAAGGGACACCTCATGA-AACTTATTCTC-AAGCTACACCTCTCCTGGCCCCAACTTCTTTCACTAGACTTAACTCCACTCAGAGCAT--------CTCAAGCACCCA-GCTTCCTCAGTCCCTTTCAACTGACATATGG

a score=5727
s chr3           10975465 118 + 160039680 GGGAATGTTAGGCTACTAATCATTCAGATGTAATAAATAGGTCAGAACATTGACCATAGATGTAGCTTCTCTCCTCTCTGCAACCTACTGACACAAATG-------GCAGCCACATCTGCAAGGC
s HiC_scaffold_1 39210487 122 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGT---ATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGC

a score=64460
s chr3            11013502 1682 + 160039680 ttttttttttttattGCACATCACTCCTTTATTATACTGATCTGGAAAGA--GACTTAGTT--------GTTACGCCCA-AACGAGCTCTGAACCCACACGGTAGGGTCAAGCAGCTGGAACATGATTCAGACAGTGAAAGACAA------AAACTCGGACATGATCCAGGGGTACTT-CACCTCTAC-AAAACAAGGCCAAGGGATCCAAACACAGCAAGAGGTACAAGGAGTTTATCCCA--CTGATATGAGGTATGGCTTATTTTCTGGTGACCACACA-GGACTGTTTCAAATGTCACTAGCAACCTCAGAGTTGCTTTTGTGTGCTGATAATATGTATATACACTTTTTTTTGTAAAAGTAAATGTAACATAGACTTGA--CAAGATTGATCCCAACCTTCTAGGGCCAGCAGCTCCTTTAGGGTCAGAGAGAAAGTAGGGTTAAAAATCACCATG-AGGTTACTTCCACTCTCCACTGGAATGACTATGCCCC-----CAGTTACCTAACTGCAGGAAGAGTGCAGGACAGGTTCCAGGGACAAAACTGGACT-----GCAGCTTCTCATTGGTCACACCACAGCACAGTTCCTCCCTGAATTCTTCCTAAGCAGACCCTTAGTAAACAAAG-----ACCTAAGAAAAACTATAGTTACTATCTCTCAACTCTCCTGG-TACAGGGAGCTGTCCCTCAATGTGGTCCGAGAACCTGCACCCCCAGAGGCGTTATTCTGACTAGATTCTATGAAGGGAGTGGGTGCAGGGGATAAAATACTACAATGAAAACGGGAGCCACAGGCCCCCATCTGCAGCTACAACTTAAACTTAAAATCCTAAAGACATAGTCAGTGTGGCAGGTGCTGGGGAGGGTGCAGGAGGCAGGAACAGGCAGGGAGGGTGTCGGGGTAGGAGTCTGCCTCTTCGCCTTCACTTCTTCACCTTGCCCTGAGCAGCCACAGCTTCCATGGCTTTGCGCACGGTCTCCTCGTCTCCCAGGAACTGCATGGGCTTGATGGGCTTCAAGTTCTTGTCCAGTTCATAGACGATAGGGATGCCTGTGGGCAGGTTCAGCTCCATGATGGCCTCTTCTGAGAGACCCTCCAGATGCTTAACGATGCCCCGAAGGCTGTTGCCGTGGGCGGCAATCAAGACCCTTTTCCCCTCTTTGATCTGGGGGACAATTTCTTCATTCCAGAAGGGCAGTGCTCTGGCAATAGTGTCCTTCAGGCTCTCACACGAGGGGAGCTGGTCTTCAGTAAGGTCTGCGTACCTGC---GATCCTTGCTGATGTTGCTGTAGAAGGGGTGATCAGGCTCCATGGGAGGCGGT--GGGACATCATAAGATCGTCTCCAGATCTTTACCTGGGCCTCACCATGCTTAGCAGCAGTTTCTGCTTTGTTGAGACCTGTCAGACCACCATAGTGTCGCTCATTGAGGCGCCAAGTCCTGACCACTGGCAACCACATCTGGTCAATGGCATCCAGGACTGTCCAGAGGGTCCGGATTGCTCTCTTCTGCACAGAGGTGAAGCAGATGTCAAATTCATAGCCAGCATCTCGCAACGCCTGCCCGCCGCGCTTCGCCTCCTCGTGGCCCGCCGGGCTCAGGTCGGCGTCGTACCAGCCGCTGAAGCGGTTCTCCAGGTTCCAGGC-------GCTCTCGCCATGCCGGATCAGCACCAGCTTGTAGGCAGCCATGGCGACGGGCAGAGGATGCAG
s HiC_scaffold_1 180420097 1590 - 233722169 tttttcttttttattgcacATCACTTCTTCATTACACTAATCTGGAGAAAAGGATTTAATTCACCTACAGTTACACCCAGAATGAGTATTGGCCCCATGTGATAGGGCCAAGCCAACTGGACATGATTCAGA-AATCAAACATAGTGAGGCACACTTAGACATGATCAAGAAGCATTTTCACTGCCACCAAAACAAGGC---AGGATGCACTTCTACCCAGAGAGGCCAG-AGTTTATCTTATACTGGTGTGAGGAATGGCCTATTTTCTGATGACCACATGTGGACATATTCAACTGCCACTGGAAGCCCCTGAAGGGTTTTTGTTCagt---------tacataatttttcttttgtagaacaACTTAACACATAAACTTAATTCAGAATTAAGCCCAACCTTGTGGAACCAGC---TCCTCTAGGGTGAGGGA-------------AGAATCACCATGCAGGTTCCATTCTCTC-CCACAGGAATGACAAGAGCTCACTGATGGTGACCTGACC-CTCGAGGAATGCAGGGGCAGCTCCTGGGAGCACGGTGTGCTCGCTGGCTTCTCCTCATGGTTCATACCTTGGCATGGTTCATCCCC-ATCCCTGCTCAAGCAGGTCTTTAGTAAGCAAAGCAGAAGCATTGGGAAAA--ACAGTTACTACCTCTCAACTCTCCTGGATAAGAAGAGCCTT----------GGACTGAGA-CTTGTGTCCT-GGAGGTCCTGTTCTGACTGGATTCTATCCAGGGA-TGGGTGCAGGAGTCAAAGTGCTAAAATGAAAATGGGAGCCAGCAGTTCCCATCCGCGACCACAACC------------------GATGTGGGCAGTGTGACAGGGG-------------AGGAGGAATGGCTGGGCAGGG-----------GTAGGAGGCTGCCGGGTGATCTTCACTTCTTGGCCTTGCCCTGGGCAGCCACAGCCTCCATGGCTCTCCCCACAGTCTCTTCATCCCCTAGGAACTGCACGGGCTTGAAGGCCTTTAAGGTCTTACCCAACTCAAAGAGAGTAAGAATACCAGTTGGCAGGTTCAGCTCCCTGAGG-----TTCAGAGAAGCCCTCCAGATGTTTGTCTATACCCCAGAGACTGTTGCCGTGCACTGCAATCAGGACCCTTTTCCCTGCCTAGATCTGGGGGA------------------AAGGCAG-ACTCTGGCTGGAGTGTCTCTCAGACTCCCACGGGAAAGCAGCTGATCTCCAGTGAGGTCTACACACCTACTATGATCCTTGATGATGGTGCT--AGAAAGACCAGTCAGGCTCTGCTGGAGGGGGGTGGGGGCATCATACAAGCCCCTCCAGACCCACACCCAAGCCTCACCGTGCTGGGCAGCAGTTTCTGCTTCATCAAGACCAGTCAGACCCCCACAGTGCTGCTCACTGAGACACCAAGCTCTCACCACTGGTGCCCACATCTGGTCAGTGGCATCCAGTGCTGTGCAGAGGGTCTGGATTGCTCTTTTCTGCAGTGAGGCGAAGCAGATGTCCAATTCATAGCCAGTGtctcacagcacctgcctgccgcGCTTTGCCTCTCCGTGGT-----------------------------TCACTAAAGCAGTTCTCCAGGTTCCAGGCATTCTGGGCTCTGGCTGTGCCAGATCAGCTCCAGCTTACAGGCGGCCATGGTGACAAGTCAGGGATGCGG

a score=8046
s chr3            11014569 623 + 160039680 CTCCAGATGCTTAACGATGCCCCGAAGGCTGTTGCCGTGGGCGGCAATCAAGACCCTTTTCCCCTCTTTGATCTGGGGGACAATTTCTTCATTCCAGAAGGGCAGTGCTCTGGCA-ATAGTGTCCTTC-----------AGGCTCTCACACGAGGGGAGCTGGTCTTCAGTAAGGTCTGCGTACCTGCGATCCTTGCTGATGTTGCTGTAGAAGGGGTGATCAGGC----TCCATG-GGAGGCGGTGGGACATCATAAGATCGTCTCCAGATCTTTACCTGGGCCTCACCATGCTTAGCAGCAGTTTCTGCTTTGTTGAGACCTGTCAGACCACCATAGTGTCGCTCATTGAGGCGCCAAGTCCTGACCACTGGCAACCACATCTGGTCAATGGCATCCAGGACTGTCCAGAGGGTCCGGATTGCTCTCTTCTGCACAGAGGTGAAGCAGATGTCAAATTCATAGCCAGCATCTCGCAACGCCTGCCCGCCGCGCTTCGCCTCCTCGTGGCCCGCCGGGCTCAGGTCGGCGTCGTACCAGCCGCTGAAGCGGTTCTCCAGGTTCCAGGCGCTCTCGCCATGCCGGATCAGCACCAGCTTGTAGGCAGCCATGGCGACGGGCAGAGGATGCAGCAGCAACT
s HiC_scaffold_1 125365776 543 - 233722169 CTCTAGTTATCTAACCATTTCCTAAAGACTTTTGGCATAGTCTACCATTGGCACTTATTTCATCTTCCTGATATGTG----AACTTTTT------AGGAG---------CTGATATATGAAATCTTTACTTGTATTTAAAAGTTTACCGAAGAGTGGATCTGATCT------------GTGCAGTGACAATCTCCATTGCTATTGATGCCAAAAGAGTAACCAGACAACTTCCCTACAGACCcgactggattttaaaaaatca---ccagaTAATTTTCATAACTTCGCC-TCATTGGTAGCAGTCCCTGCCTTGTTGATATTGGTCAGATCTTCAAA--------------------AGATACT-ACTGCAGACAACCATATTTGGTTAATGTGATCTGGCACTGTCTAGAGGTTCTAGATTGCTCTCATGAGCACCCAAATAAACCAGATGTCAAATGCATCACCAAAGTCATAC---------------------------------CTTAACAGGTTTATATTGGCAT-------ACAGAAAAAGCAGTTCCTTGGCTTCTAGGAGTTCTCACGGTACCAGATCAGTAAGA-TTTACAGATAGCTATTGCTACAAGATTAGGAGGCTGTGCTAACT

a score=8621
s chr3           11087079 537 + 160039680 AGGAGAGAACAGAGGTGACAAAGTAATGGGGTGAGTAGATGGTCTGGGAAGGGAGAGCATTTAGGTGAAAGACCAGGAGTTAGGACTGGATATATGTATATGAGTTCAAAAAACAAGATGAGGAGAGGTTACTTGGAGAAA-GCTCCTAGCCTAAAAAGGGCCAGAGGTAGGAGTTTTACCCAATCAAAGTAAAGTTCTTGTGACAGCTTAACAAGAATGGTTTTTAAAAGAATGGTTAGTTCTTTCTACCTTACCTGAAGATTAGGGGTGGCAGGGAATATGAAAATGCCAGGGGATATCTAGAGCCTTAGATAGAATTTGAGAAAATTGGGAAGTAAATTCGGGACCATTGTTTGATTGGAGAGAGGCTGGGACATCAAACCAGGGAATGATCTCTCA---GAGAAGATCAGAGACTGTCTGAGCCCTTTTGttggttgtggaaaatgcctctacccaccccgagaaggtgtctac-caggaccaggaggtactgggcagatctaattgtaggcatgtgtgtaaagtcaagttgccagtc
s HiC_scaffold_1 28619089 517 - 233722169 AGGTGAGAATTGAGATA------TAGTCAGCCAGAGGGAAGGTCTTGGGAGGTAGG------------AAGATTGTGAAGTAGGAATAgactgccatacataagttcaaaagggcTTA-GAAAAGTGGGAACCCAAGGAAGTGCTCTGAGCTTGGTTAAGACTAAGGGAAGGACTTGAGGCCAAGGTTGATGTAATTCTAAAGTGAGCTGTGTGAGGTGTGTTTTTAGGACACCATTT-GCCTTTTTAACTTTTCCTAAGGATTGTAGATGGTATGGAATGTGTACGTGCCGGGTGATGTTCAAAGCTGAGGATATCTGTTCAGTGATCCGGGAAATGAAAGCAGGACCATTATGTGATTGGAAACTCTGAAGTAGACCAAATGTAGGaatgatttcttattgtatgatTTTAGTAACTACATCAGTTCTTTCCCTAGCTGTGGGAAAGGCTTTGGTCTAGCCCAAAAAGGTACAGGCAAAAGGTAAGGAGATATTTGAAAGTT----TTGT-GGCATGTGTGTGAAGTCTATTTTCCAGTC

a score=7351
s chr3            11087273 343 + 160039680 TTCTTGTGACAGCTTAACAAGAATGGTTTTTAAAAGAATGGTTAGTTCTTTCTACCTTACCTGAAGATTAGGGGTGGCAGGGAATATGAAAATGCCAGGGGATATCTAGAGCCTTAGATAGAATTTGAGAAAATTGGGAAGTAAATTCGGGACCATTGTTTGATTGGAGAGAGGCTGGGACATCAAACCAGGGAATGATCT---CTCAGAGAAGATCAGAGACTGTCTGAGCCCTTTTGttggtt-gtggaaaatgcctctacccaccccgagaaggtgtctaccaggaccaggaggtactgggcagatctaattgta-------ggcatgtgtgtaaagtcaagttgccagtc
s HiC_scaffold_1 106605923 346 - 233722169 TTTATGAGACTGGTTCAGAGAGGTGGACCTTGAGAAGGCTGTTATCTCTTCCAACTTTTTTGGATGGTTAAGGTTGATTGGTGACGTGGAGGTTTTATTGGACACCAAGGCACTTGGATACCTCCTGGATAATTTGAGTAATGAAATCTGGATGACTGTCTGATTGAATAGAGATAGGGAGATGAAACTGGGAGATAATATCAACCAAGAGAAAGTT-GACAATGGCTGAGACCTTTTCTAAGCCAATGGGCAAGGTCTATATCTATCTAGTAAAGATATTGACCCAGACCAGGAGATATC-------TTAACTTTTACATCCACAGCTTGTGAGTGAAATCAATTTGCCAGTC

a score=12836
s chr3            11090643 1829 + 160039680 GTGGCTGCTAACGTACAGATAGAAGGTGCCTATCCCTGGATGGTTAGATCTAGTTTTTTTTGACAAGTATGCTATAGGTTCAAAAGAAGGTCCCAGTTGATGACCTA--AGACTCCAAGCACAAATACCTCTTTTTCAGTTACATAG---AGGGAAAAGGGATGAGTCAGGTCAGTGAGATGTAAAGCTGGAGCCTT-AGGAGAGCCTGTTGGAGCCTTTGAAATGGCTTG---------GTAATAGGTTTGAGAAGAGGTTCATGGATGGGGCCTAAACCTGCTTCATATAGGGGACATGAAAGGAGGGAAAAGGAAAGAACCCAGGAATGTAAAAAACTAGCTCTTCCTAGGAATGATAAAATCTCTTCCTTTGTAGAAGGAACAGTTAGAGA--CTGAATCAGAATCTTTCT---ATCTAAAGTAATAGCCTTGTGGGTTGGGGTAATTGTTGGTCCCAAATTGGTGACCTGAGAGGTGGACAGTTGGACTTTAGAAGGGGAGACCCTGTAGCCACGACTGGAGAGGAAATTTAGAAGAGCAGAGGTGTCAGGTTGGCTA-ATTTCTAAAGAGGGGCTACAGATGAGTTTTACATCATCTACGTAAAGTATAATC---TTAGATT--TAGG---GAGAGACTGAG--ATTAAGTCAA-AGCCAGGgcctgaccaaatatgtgtgggctgtccctgattccctgaggtagaacagtccaggtaagttggatagaaaagtgggtaacaggatctgtccaggtaaaggtaaatatgtaatgtgactgggcaccta----gagggatagagaaaaatgcatccttgaaatctaggactgagaaatgtgaatcccccaagtggatagtggaaagaag---------------tgtaaaagggttcgccactacaggatggagaggaaccactgcagaattaatgcacctgaggtcttgagccagGCAATAGGTACCATTAGGCTTT-TTAACAGCTTAGTATAGGGGTGTTAAAGGGGGACGAGGTAAGGTGAAGGAgttttgtattttttgtttttgttttgctttgtt-ttgttttgttttTCTCAAGAGGTCAGAAATGACTGGCTTAAGTCCCCTGAGGCTCTGGGGAAAGAGAGAGTATTGAGCTTGGGTGATGTACCTGGTAGAGTCCAGTAattggatgacaacaggagaatggtgtttagcaactaa-------gggtttctgga--tgtcccagacttggggatctacctgagaagctggtaaaggaaataacatggtagtattagtaggttggctggctagaagaaggagcagagaaactgctgtcaggcttgggtttaggccaattaggggagcaaagcaaataaaggctctgagcctggctagaagattcctttccaataaggggacaggacatgttgacactaccaaaaaggaatgtgtaaaaggtacaccc----cccaaaatgcaacta---------agtgatggtgtattgtgagggaagtaagcatgtcctcctaccccgaaaataggaaaacaagga--gaagtgggtacccaaaattctatcaggactgagtaagtggtcccagtgtccaagaggtaggagatgggcct-cccatgatatcta-----cctggggctccctgctagtgatgttagtggtcaggtcagaggagcttgggcctcctcagtcggccatagccaagcctaggagatcagttggagggtaatc---tgggggtgatgtccctctgttctgtgtaacatgagggca----------------------atcaacagtccgatgacccccttaatggcacct-----------agggcatggcccccttggcttgtagaagttagtgcaggcttttgcccagtgaccttgttgaccacatttgtagcagttacctgatggtctctga
s HiC_scaffold_1 123206187 1771 - 233722169 GCAGTTGCAAGGGCTCAGCAGCAAGGTGTCAATCCTCTCACTATATTGTCTAACTGTTTTTGACAAGTAGGCTACtacttgaaaagaaggtcccttttcaTGTCCCAGTAAACCTACAGCATTGTGACCC-----TGAGAGGTATAGTACAGAGTGAAAAGTTGAGTGTGATCAGGAAGGGTAAGGGCTGGGACTTTTAGGAGAGCCTCCTTTGGCTTTTAAAAGAGGGTGTGTATGGCAGTAGTGGGTTCTAGG---GGTTCTGATAAGGAGCCCTTGGGAGATTTATAGAGGTGTTGGGCTAGAGCTGCAAACTTAGGACtccagaagtgaaaaaaattagcCAAATTTGGACAAGATAAAACCTCTTGTTTTGTTG--TGGACTCCTGGAGGTCCTGAG---GAATTTTATTGTGATCTGTAGTGATGGAATGAGTGACAGGAATGAGAGAGAAATCCAAACACTTGACCCTTGGGGAAGCTACTTGGGCTTTAGCAGAAGAAACCCTGCACCCATGACTGAAGCGAAAATTAAGGAGA-------------CTCAACTATATGTCTAAAG----------TATGAGATTGAGAACACAGGAGAAGATCATCATCATATTGGAGTGCTAGGTGTGAGGTCCAGAGCTATATGGTTAGCAGCAACAGCTTGGCTAAAGAAATAAGAACTATCTCTAAACCCACAGGGGATCACTGTCCATGTAAGTTGTTGAAACCTGCAACTATCTGGGTCAATccacataaatgcaaaaaaatcctGACAATTAGGGTGTAAGGGAAGGGTTAATAAAAAAAGCATCTTTAAGGTCTAGGACTGTG---------------CAGTGAGTGGTGGAAGGAAGAATATAAGAGAGCGTAGTATAAgaatttggcaccactgggtgaattGGGGTGAAAGCATCATTGATTACCATAAGGTTTTATACCATATGATAGGATCCATTAGGCTTGAATACCAGA--AGCATAAGAGTATTGTAGAGTGAATGAGTAGATTtgagaa-------aaccattgtctaaaagataCTTGGTTATAGGTTTGATCT--------------AGATAGTTG-------------GGAGCTACAGGGTATTGGAGAATGCAAGGAAAGATTGAAAGatctgaga------------tgaattaaaacaaG----TAGTGTTTAAAACATGATTAGTGTGGGTGGTTGGAGGTGTTCCA-ATTATGGAATTaacaagggaagaagggagaataAGATATGGGTTTGTGATGGTATTTTG-------------------AGGGAAAGAGCTGTGAGG-------------------AGGGAG-AAGGTAATGAGAAGTTAAGATTTTGG--AATCAATCCCCACCTAAAAGGGGCATAGGACATGTT---ATTACCAGCAAGCTATGGGTGAAGAAAAGAGTTTGGACTCTGCATGCAATGAGCCTTGTTTAAAAAGGCTGTATAG-GTTGGAGGTAAACAGgcactac-------------agagactgaggatttaATACAGTAGCCTAAAAACAAGAAGAAC--ATTAAATGATGCCA-TGTCTGACAGTACAGAGAGGGTCTTATCTAAGACATCCAGTGAGATTTGGGCTCTAAGAAATATACTTTAATGGGGATGACA---GGCtttgagccccatcagtcttgaGCAGTAAATCCAAGTATATTAGCTAATGATAAATCCAGTGGTGGTGAGATTCCTTTG---------ACGTCAAGGAATTAGTGAATGGCTTATTGTCTGGTTGTTAGGACAATGGCTCTTCTAATGGCCTTTGAGATTACAAGGGGGAATGGCCCCAAAGGAACTAATAGGTTGGGGAattctcttgcccagtgtccttccttgttgcatttgaagcatggtccagaaGGACCTTGA

a score=13511
s chr3            11090876 750 + 160039680 TTTGAGAAGAGGTTCATGGATGGGGCCTAAACCTGCTTCATATAGGGGACATGAAAGGAGGGAAAAGGAAAGAACCCAGGAATGTAAAAAACTAGCTCTTCCTAGGAATGATAAAATCTCTTCCTTTGTAGAAGGAACAGTTAGAGACTGAATCAGAATCTTTCTATCTAAAGTAATAGCCTTGTGGGTTGGGGTAATTGTTGGTCCCAAATTGGTGACCTGAGAGGTGGACAGTTGGACTTTAGAAGGGGAGACCCTGTAGCCACGACTGGAGAGGAAATTTAGAAGAGCAGAGGTGTCAGGT-TGGCTAATTTCTAAAGAGGGGCTACAGATGAGTTTTACATCATCTACGTA---AAGTATAATCTTAGATTT-AGGGAGAGACTGAGATTAAGTCAA-AGCCAGGgcctgaccaaatatgtgtgggctgtccctgattccctgaggtagaacagtccaggtaagttggatagaaaagtgggtaacaggatctgtccaggtaaaggtaaatatgtaatgtgactgggcacctagaggg-------atagagaaaaatgcatccttgaaatctaggactgagaaatgtgaatcccccaagtggatagtggaaagaagtgtaaaagggttcgccactacaggatggagaggaaccactgcagaattaatgcacctgaggtcttgagccagGCAATAGGTACCATTAGGCTTT-TTAACAGCTTAGTATAGGGGTGTTAAAGGGGGACGAGGTAAGGTGAAGGA
s HiC_scaffold_1 207291086 727 - 233722169 TTTGATAAGGAGCCCTTGGAAG-------------CTTTGTAGAGGGGTTGGACTagagctgcaaagttaggaatcccgAGATGAAAAAagttagctaaacctaggaaagacaTAACCTGTTATTtggttgtgggcac--ctggagatcg--------cCTTGTGATCTGTAGTGATAGAATGAGTGGTAGGAGCGAG----AGACCTAGATATTTGACTTTTGAGGAAGCTATTTGGGCTTTAGCAGGAGAAACCCTATACCCATGACTGGCGAGAATATTAAGGAGACTGGCAGTATGTTGTATGGCTAGCATGT-AGGATGGAGAACACAAGAG---AAGGTCATCAACATATTGAAGGAGAGTGCTGGGTTTGAGGTAACAGCTGCA---AGGTCAGCAGCAAGAGCTTGGCTAAAGAAATGAggactatctctgaacccttgagggagcactgtccaagtaagttttg-agacctgagagtgtctgggtcacttcatgtaaatgcaaagaaatcctGACAATAAGGGCATAGggggtggtaaaaaaaaaaaaaaagaatctttaagatctaggactgtaaagtgagtggtggagggagggataggAGAGAACATGGTATAAGAGTTTGGCACCACTGAGTGAATTGGGGGAACAGCAtcattgattaccctaaggtttTGTACCAGGTGATAGGACCCATTAGGCCTGAGTACCAGAATA--ATAGAAGTATTGTAGAATGAATggataggtttaagaa

a score=6137
s chr3            11751164 123 + 160039680 ATCTTTACCTCCATGATATATTTGATAAAAGGTATCCATCAAGAATATTGAAAAGTCTGTTCTGCAGGATGATCTTTTATTAGTAGTTTGACTTACTGGACTAATATAATTAAAAGAAGAAAT
s HiC_scaffold_1 119426548 115 - 233722169 ATTTTTACCTCCATAATGTCTTTGATAAAAGGTGTCCATCGAGAAAGTTGAAAAGTTTCTTCTGCTGACCGATCCTTTCTTAATGGTTTGCCTTGTTGA--------GACTAGAAGAAAAAGT

a score=22640
s chr3            12241467 1249 + 160039680 gaagcagtaatcaaaattgctgttctgagagagag-----agagagacacatacacacacagaaataaaatagtagtatcagtaattctcaaattaatctacaaaacaaaaacagagcaacttgggaacattgtccaagtctttttacaagaacacagtt-atactttttttttctgaaccccataaagacctaacaaagaagagaatcaca-----taccaattttcct--------tatgaaaataggtgcaaTTTCT----TTTTTACTC-TTTTTACAACTGAGATTTTATTGGTAAAGGAGCAGAATA-CACAAACCTTTCA-----------GTTCTTAACACATATACCAAAACTGTGAAGAGTCATACATTGTATTCATGTACCCAAATGATGAGCCCTGTGTTGTTTCTCTTTGAATGTATTCCACTGATGTTCCATCCTCAAATCTGG---CAAGTTTTCCTTAAGACCTCATGTAACAACCAAATGCCCTTAACTGGAATGCAGGAATTCTTCTGAGTCACTTTATTT--------ACTTATTTATTTGTTTAGCGACATTGT---TCAGTGAGTTCATATTCAAAATTTCTAATGTTCACAGCACATTGTCACAATTGTTAGGAAAA-TGAATTGCCGTGACCATTTT--------------GCCATTACAATTCTGACAGGATGAGAACCGTGGAGTGGTTTTCTTAG---------------AAACCACAAGATGAGAAAT-AGCTGAAAATATTCCAGACAC----------------TAATGTCATATTTCCATTTAGTATGCTTTGTATTGTAAGATATAAAACTAGTTCCC-TCTAAGGAATGTTATATTGATTCCTGAGATAGTCAGAGCCTTTCCTGATCCAGTATCCTGCTATTTTTCTGGTTGTATC-AAAAGTAAACAACCAGCAAATGATGTAACCTCTTTAAAAATATATCATTTA-CATTAAAAAATG-GATGAGCTAGGATTCTCACACCTTTTAAAAGGGTTTCTTGAGTTACTAAaaacaaacaaacaaacaaacaaCAACAAAACCCTCACACATACAAAATGGTTAATGAAAATGTTCCTGTGGATTACAGAAG------GACAGGTTGAACTTGTTCAAGAACCACCGTCTAAGATGATTGATGG-TAGCCAGACTTGGCTTCTTTCTCTTCTATTTCAGAGGCCATACTC---TGGCTTTTCCTCTCTCCATTTCCCTGCAAGCTGGTC---TGTAGTCTACTGGTCAGTCATTTCAGGCT-TTTTGCTTTTTTCTCCCCTTTCCCTTTGGTTTGCACATTTTTTTTTTGGTCTGATTTATCTTTTCCCAC
s HiC_scaffold_1 216325853 1224 - 233722169 GAAGCAGTAATGGGGATG--TGATTTGAGGGAGAGGTGTCAGAGGGATTAGAGTATACACG---AGACAACTGTGTTCATTGTACTTCTCTAAT-------CAAAGCAGAGGCGTGGACA---GGAAGTGTTGGT----TCTCAGTAGAAGAGCTGTTTTGAGACTCCTTTTTTCAGG----CATATAGATTAAAAAGTGATGTAAGgcaaaaagaatattatttttcctcCACTAGCTATGAGTTCCAGggcaattattattattgttacttaCTTTCATATTTGAGATTTTATCGGTTGTGTTGAAGACCAATagagacatttcactttttaCAGAATTCTAAACACACATGCCAAAAATGTAAAAGGCCAC---------------------------------gtgttgtttctttttcagt-tattccAGAGACTGTCCAGCTTCAAATTTGGAGGCAAATTTTCTGTAAGAAGTT----------TAAGTACCACTATCTTCAA-------ATGTTGCTAAG--ATCTTATTTTAAATGCCACTGATTCA---------CAATTTTGTATCTTATAAACTACATACTCAAATTTTCGATCTTTTGCAGCACGTTAACAAA----TTAGGCAAACTGGACTACTATGACCAAACTAAAGATGTTAGGAAGTGCATACAATTCTGACAGGGCAACAGCCAGGAAGTAGTTTTCTTAGTAAGcaattttactaaaaatataggagtagaaatcattttaaaatgttcaaggCATATTAAATGCATGATTGTGATTCTAAATTGCCATCTAGCATGCTTTGTATTGT-GGATATAAAACTAATCCCCACCTATGAAATGTTAAACTGACACCCAAGACAGTCAAAACCTGCCTTAATTCAGTATCCCACTA-TTTTCTGGTTGTgccaaaaaatgaacaatcagcGAATGATTTTAcctct----aaataaataatttacccTTAGAAAATGCAATGAGATAGGATTCCCGC-CTTTCTAAAGAGGTTACTAGAGCTGCTAAAAA----------------------------ACTTGCATTTACAAAATAGTTGATAACAATATTCCTCTGGATTGTACAAGCAGCGAGACCGGGGAGTCCTGAT--AGGAC-----------ATGGTGTGTGGTTAATCTGACTTGGTCTTTTTTCCTGCTTCGTTTGAGGCTGCACTctcttcattttccctttctccattt-tctgCAGGTAAAtcttatttggtttcttgtttagCCACTTCAGCCTGTTTCGCCTTtgctctccttttcctttttgcttgcACCTTTTTTGTCCAA--AGATGTATCCTTTCCcgc

a score=20230
s chr3            12631244 765 + 160039680 TCAGTCATGTTCTGAAGACATGTGAGGCATTTACATAAGACAACAGTGAAAAATGACGCTGGAGTCGCCTTATTTGTGCATTGAGATCCTCCTGAGAATTACCTAGATACTCCATTTTATTCTACACCAGGAAAGTATAAGATAATGGAGGCAGTAATAAAAAAACTACCCAGATGGGCATAAAGCAGTTGTTGTGCTGCCTGTCCTGGATCTAGCACAAAGGCAGAATAGATGGTTATTCCTCTCAGCTGTGAACAAGGTGGCAGAAGTTTTAGAACTACCTCCAATGAGAGT---CTGTAAAGTAAAAACTTTTTATGCAATGTATAATCAAAAGCCAGTTTCA---GGTATGTACTAGTATCTTTGCATGTTTGAGATTCTGAAAGCATACTGGAGACCCTTCAGAGAATGCTTAGAACAAAGGGTAGATGCACTACACCTGAAAAACTATTCACTGTTATGGAAGGTGAATACTTAAGGATCTGT----AAATGCAGCAATGATTCAAATAAATGGCAACTACTATGAGGATCTGACACCCAAGGTTTTTGAAGATAATACTAATGAACTCAGAACTGGGAAAGTTCCAAAGTCTGGGCCAAGAAGTATCTGGTTCTATTGTGAGCCAGCTAGAGGCCTTGCTTCTTTGACTGAACCACCCAAACAACCTAGCATTGATGTAGAAGAAAGACTTTAACTTATATTCACTGTAGAGATGTCATTGGACaaataaaatatgaaaat---atttacatttttaaaaaattCTCTTTA
s HiC_scaffold_1 216542133 741 - 233722169 TCAGCCATGA---AAAGACAAAC-AGGAATTTGTGTAAGACAGTTGC-ACAGATAGTGCTGGAGGAGCCTTATTTGTGCACAGAGACACTCCCGGGAATAACCCAGATGCTCCCCTtggcctcacaccagcacactgtaAGG--ACAGAGGCGATTGTAAAACA-CTGCCCAGAAGGGCATAAAGCATCAGCTGTGCTTCCAGTCCTGGACTCAGTCCAAAGGCAGAATGGGCGCTTGCCCACCTCTGTTACAAACAAACTTGTAGGA-TTTTCCAAGCGCCTCCAGACAGAATACACTGCATGAT-TGTACTTCATATACAGT-TGGAAGCATGCACTGTGTTCAAGTGGTGTTTAATTGCACCACTATACCTTGCATGCTCTGATAGCGTGCTGGAGGCTATTCAGAAAGAGCTTGAAATAAAGCCTGGGAG-ACTACACCTGACCAACTTTTCATT-TCATAGAAGTGGGATGTTT-GGGACCTGTGTAAACATGCAG--ATGGTTCAGGTAAATGGCAGCTGCTA----------ACTCTTAAGGATATTGAAGAAATTATTGATAAGCTGAAAGCT-GAAAAATTCCACAGCCTGGCCCAACAAGTGAATGTTTTGCTTGTAAGCCAGCTGGAGGTCTTAGCTCTT----TGAACTACCTGAAGTATCTGGCTTTGGTGTGCAAG-CAGCCTTTACGTTCT----GCTATAAATatatcaatggagaaat-aaatgtGAACCTCCcatgtacaaaaagaaagaaatctgtttA

a score=16907
s chr3           12856022 1470 + 160039680 CAGGGTCTGTT-AACTTTCAAGGACGTGGCCTTGGACTTCTCACTGGAGGAATGGGAATGTCTCAGTTTTGCTCAGAGGTCATTGTACATGGATGTGATGTTGGAGAATTACAACAATCTGTTGTTTGTGGAAA----ATCATTGCA---------------TACGTGGAAAGAATGGGAAGGTATTGGA-TCAAGACAGCCAG--TACATTGTCCATGAA--CACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGCAATGTCATTCTTGAATCCCTCCAGTGT----ACACCTTACAAAACTAATCACAGCTCTGATGCTCTTCAATTCTCGAACCAAAAAAGACTTAAGCCCAGG---------AACACTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTTTGTTTTCTACCATTAGTCTCAA----------TCAAGGAATTAACATGCAGAAGAAAAAACACAAC-CGAAATGCAGAATTAGACAAGAT------TTTTGT-----TTCTAAACATAAAGTCATGGTGAAAAAAGACAATAT------TGCagggaaccc----ttacaaa------tgtagtgaatttcacaaatatcttacccagagagaaaacctacaaagtcagcagagaatttatcatggaaagaaac-cttacaaaagtagtaaaagtgacaaatgctttacccatcagatccatc---ttagtattcatcaggaaa---ttcatacagaaaagaaaatttacaaatgtagtgaatgtgacaaatgttttaaaaacaaattcaatcttactatgcatcagagaatt-------catacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatccaatcttagtattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctttacccaagaatcctatcttagtattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtggcaaataatttactgaaaaaag-------cagtctgagaattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatccaatcttagtattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgctttacccaacaatccaatcttagtattcatcagagaatt--catacaggagagaaaccttacaaatgcactgaatgtggcaaatgctttactgaaaaa----------------agcagtctgagaattcatcagggaa-------------ttcatacaggagagaaaccttacaaatgcagtgaatgtggcaaatgctttactgaaaaaagcagtctgag---------aattcatca---gagaattcatacaggagagaaaccttacaaatgcaatgaatgtggcaaatgctttactgaaaaaagcagtctgaggattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtggcaaa
s HiC_scaffold_1 46218748 1486 - 233722169 CAGGGTCTGTTTGACATTCAGGGATGTGGCCCTAGAATTCCCCCAGGAGGAGTGGAAGTGCCTGGATCCTTCTCAGAGGGTTTTGTGCAGGGACATGATGTTGGAGAACTACATGAACCTGGTCTCCCTGAGAATGTCTCCTTTGGACCTGAGTGATGTCTCCATGTTGGAGCCAGGGGAGAGTGCTGGAGTGTTGATGGCCAAGTGAAACCCTCCAGAAACTCAAATGGGTGTGAATGTG--------TCAAAGGGGTAGCCATAGCC---TCATTCTTCTGCTTCGCTACTGCTGTGGCACCATTTCAAGAAGGTCAAA-----TATGTCTCCTAATTGTC---TCAAAGAAATTTTCATCAAAAGGGAGAAAGCAATACAGGAGAAATGTTCCAG-ATAATAATGTTGGAAAGACACAAAAT----------CCATGGCACTGAAAAAGAATGCTTCAAAGAA-----ATCCAGACAAAGATACAAAACTTTAAGTGTGatttcagagaaaatgaaagattctGTGTGACTCATAAGAAAAATTTCACTCAGAGAAGTGATGGTAGAAGAGATACAGAAAACCCTGTATTAAAAATTGGCTTGGAGTAAACTTT-TAATCACATTGGCCTGAGCTGCAGCT-----------------ATTTGAAAGGGCAAGAAATACTTATAAATGCAGTTACAGTGATCAGTCTATCAACAAT--GATTCCTCAATTTAAT-TACACCAAAGAAATGCTTCTACTGTCAAAACAA---ACATTTCtcatgaatgtaaatattatttc----attgattc---tttattttcCACACAAGAACTGGTGATGCACATTAGTACAAAACCTTACAAATGAAATGAGTGCAGCAAAACTTCTATAACAAAGGCC------------------------CATTCTGGAAAGAAACAATTTATATATGATGTATGTGGCAAAGATTTCAACCAGATATCAAACCTTAGAAGTCATCAGAGGATGCATACTGGAGAGAAGCCTTAC-AATGCAATTAATGTGGC---CATTTTAAGGTATATAGGTCATCACCATCAAAGGA-CCATAAAATAGCATCCATAAGGAAAAAACCTTACAAAGGTCATTAATGAGGTAAAGTGTTCGGTTGTAATTCACACCCTGCCATGCATTTAATAATTAACA------------CTTTCCAAAGTAATGAACATGGCGAGTTTTTCAGCCAGAATTCCAAACTTGCCTATCATTGTAGGATTGCCATCCTGGAGAGAA-----ACAAATGTAGTAAATGTGGAAAGATCTTCAAACACAAGTCATACCTTGTGTGTTATCAGACAGAAACCTTTGCAAGCAAGTTCCTTGCTCTtctcatactggagagaaacctttcaAATGTGATGAATGTGGCC------------AGGTAATCAGTCTAAACTCATCTTTAACACATCACTGGAGAATTCACATTATACAGAGAGCTTATAAATATAAGGAATATGGCAAGGTATTCAGTCACAAGTCATCCctagaaaaacatcaaagaattCATCCTGGAGAGAAACCTAACAAATGTGACAAATGTGGTAAA

a score=4714
s chr3            12856024 118 + 160039680 GGGTCTGTTAACTTTCAAGGACGTGGCCTTGGACTTCTCACTGGAGGAATGGGAATGTCTCAGTTTTGCTCAGAGGTCATTGTACATGGATGTGATGTTGGAGAATTACAACAATCTG
s HiC_scaffold_1 207543579 118 - 233722169 GGAACTGTTGACATTCAGTGATGTGGCCATTGGTTTCTCCTTAGAGAGCTAGGAATTCTTGGACTCTGCTTAACAAAATTTGTATAGAGATGTGATGTTAGAGAATTACAGAAACCTG

a score=41384
s chr3            13668936 1287 + 160039680 ctaggcctctatttTTGttgttgttgttgttgtttgtgtttttgtttttttttAATAAAAAATTGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAGCCGCATTTTTTTTAATTTTTGCAATTACAGAATGGTATTCAGTTAACAGAACAACAATTATTGTCGTTATAAGCTGCATCAGAGACAACTGAAGATGAAaaaaataaaacccaaaaataaaaccaaaaggaaaaaacaaaaacaaaaaACCAAACTACTGTCCCCATATATAACTAATTTGTGCTGTACACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAACCC-CAGACTGTACCAGGCAAGGTTAGTGGCAATTGAAAATACCACCAGGACAGGGCTATCTAAAGACACATTCGGTAGTGTGTTAACTATACAATAAAAAAAAGACACTGTACAGTTTAAAAACAAATCTTACACAGCCTTACATTTCAA--TTTTTTCTTTAAAAGGAGTGAGTTGTGTACAGGGG---GTTTAAATGCTTTATAGACAAGAAAAAAAAAATAAACTGCACTAGATCCAACTTTTCATCATCATCATCATCTTCTT----------------------------------------ATTCAt-----------cttcctcttcctcctcttcctca----------------------tcctcttcatcctcatcatcatcttcctcttcctcctTTTTCTTGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCAG-TTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCCCATAGGGCTGCTTGTCATACACTGCAGTGTTGTTCCACATC--TCTCCTAGTTTCTTTGC---AACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAACAGAACAAGAAGAAAGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCACGAGGCACAGAGTTGCCCAGTGCCGGTCTGGCTCGCGCTTGCCCCGGCGCTGTCTCTA
s HiC_scaffold_1 118338172 1249 - 233722169 ctatgactttctttctttctttcttccttcctttctttctttcgtttttgttaaattaaaaa----atttacttaaaagcATTCAGAACATCAATAAAA-------agcttcagtatttttttcaattatagaGTAATTTTCTGTTAACAGAT------TTATTTT--GTATAAGCCACATCAGAGccaaattaaaagggaaaaataaaaaccctg-----------------------------------CCAATC------CCCAATATACAATTAATTTGTACTGTGTATCAACCC-AACCTACTTTAAATGTCTATACCAACTTATGACTCTCATCCTGTAACAACCAGTGT-AGAGGCCACTGAAAATACAGAGAAGATGGGGCTTTCTAAAGACTCATTTGGTAGTGTG----CTATACA-CAAAAAGagaacactctaccactgagaaaCAAATCTTACACAGCCttacatttaatctttttttctttaaaaagagaaacttgAGTGTGGGGAATAGTTTACAtgctttatagatgagaaaaaa--------tTGTGCTAGAACCcactt--------aaatattatattttttcttgagacagggtcctgctatgttgTCCAGGGGCCTTGAATTCTTGGGCTAAAGTGTTCCTTCTACTTTAGTCTCCCCAGTGGCCAGTGTGACCAGTGGAATcatcttctttcttgtctttttcttcctccgTCTCCTctt-cttgctttttgcagctCT---CTTCCTTTGTTTGCCTGTATCAGGCTTTCCATTAGCTCAGCATACGGCAAtatcttttctgcatttttccaTCAGCTGAGCAGCCTTCTG-----AAGGCAGCCTGTCACCTGCAGCAGTATTATTCCACCACGTTTTACAATTTTGTTTGTGAGAACACCACCAACGGATAGGCAGGAATGCTCTCCTTTGATT--AGGGGTGAACTGAGGACAGGACAAGAAG---GGTGACAGAGGCCTCTTGCATACCTTAAGTTCCTTGaacttctttttgctttctct----gaGGGAGtttaagcttttgtttttctttc---------ctcatgggcctttgctatgtcttcaggttttcttttctcttttgcagtcCTGGCATGACACCTTACTGAGAACTTCTTAGAAAACTTTGGAAAGTTGAT----GCATT-GACTCTTTCTTCTTGTGCTCCTCATGGCAAGTTTGTAGAAAGAATATACACAATGACACTTT-CTCCTCAGCTTTGTAGGCTGTCCTCTGCCCATGTTTCgttgtttttcctttgtgagGCACAGAGCTGCCCA-------TTCAGCCCTTGCTTGCCCTGGAACTGTCCCTA

a score=6337
s chr3           14267311 127 + 160039680 GGGACTATTAGGGTACTAATATGAACATTCAGATGTTCATATGTCAGAATACTGAGAACAGCCATAGCCTCTCTCCTCTCTGTTGC------------ATGTGACACAGCAGCCACACCTGCAATGCCTCTACGGGCAG
s HiC_scaffold_1 39210487 134 - 233722169 GGCAGTGTCAGGCTACTAAT-----CATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=8184
s chr3           14564433 333 + 160039680 AGTCTGTTTCATGAT--GTAATAAGTTCTTGAGAATTCTTAAGTCCAAAGGCCTTGCTCCTGATTGTCCTGAA--------------GATTGAAAGCATTGCTGTTCCCAAGCCTC-TGAGATGAACATAAAGGACACGGATGCTAAATTCTACCTGATTCTGATAGAGCTGGATTCACCGATTGGTTCCTTGTTATAAGCTTAAGTGGGTCTT---TCATCCAACTGCAAATATGAGCCTTCCTCAGCCTCTGCTCTGATGGCATACATTTGCCTTGTGTACTAAAACAATAAAATCACTTTACATTTTTAAAAACTGTTAGAAAAATAGAACTAGAGCTTAA--AAATAATAA
s HiC_scaffold_1 71518376 334 - 233722169 AATTCATTTAGTGATAAGCAATAAAATCTTGAGAATACTTAAGCCCAAAGGATTTACTCCTGATCTTCCTAAGAATCTCTACAATTTAATTAAGAAACGTGCTGCTCAAAAGCATAGTGAGAGTAACAAAAAAGTTAAGGA--------------TGGTTCTGACAGATCTGAAGTCACCAAATGTCTCCACACTATACGATCAACAGGGTCCTCCCCCACTCAGCTAGAAACACAAACCATCTACAACTTTTTTCCTGGTAGCATAAATCTG-TTTATGTCCTCAAGCAATGAAATCAC------Tattaaacaataaacaaataaatacattcagatttgaaagaaatagtaa

a score=3718
s chr3           14866821 81 + 160039680 CTCTGGACCC----------TACCGACTTCGCCAATTCCATCTTCACTGGGGCTCCTCTGATGACCACGGCTCTGAGCACACCGTGGACGG
s HiC_scaffold_1 56033421 91 - 233722169 CTCTGGGTCCCGGCCGGGAGTACCGAGCTCAGCAGTTGCATCTGCACTGGGGCACTTCGGATCGCCCGGGCTCAGAGCACACTGTTGACGG

a score=8319
s chr3           15014650 358 + 160039680 GACCACATGTGCAATGGAGGTCTTCAAGGACTACAATAGAGCTAAAAAATCCT-ATTGCCTATTGATGCCATAGCCACCATAATAGCACAATGCA-----TTATTCATGAGTTTCTCATGAATCTGATCTGAACTAATATACTGAACTAACAGCCAAGTGAGAGCATAGAGCATACAATTGCTTATAGGTCATAATACTTAATA--------ATGACGATAAATGTTGGTATTACTTGCTTAACAGATTTCTATATCTGCACCAT--------------------CAATCTTTATT-TTAGAGTATATTCATTCTA-ATTCTAAACATATCTACTGTAAAACAGT---TCTGTGACACTAACAGCAATTTCATG--TACTTCATGTTTTTATCATATCA
s HiC_scaffold_1 50351168 387 - 233722169 GACTGCAGATGCAATGGCAGTCCTGTAAGATGATAACAGAGCTGAAAAATTCTTGTCGCCTAGTGCTGTTGTAGCCATCATAATGCCATAATGCAACACATTATTCACATATTTGTCATGATGCTGGTATAAACAAACCTACCATGCTACCAGTCATATGAAAGTATAGCACACACAATTATGTACAGTACATAGTACTTGACAAATGTGTTACTGCTTTATGTATTTATAGTACTGG-TTCGTGTACTTATGTATACATACCATGTACTAGTgtgtatttattatactttttattgTTAGACTATGGCTCCTCTACATAATAAGGAGGTTTATAGTAAAACAGTATGCCTATGCC-----------TCTCATGTTTACCACATCTCTTGATCACATTA

a score=3718
s chr3           15136735 109 + 160039680 ATGTTACTGGACCATTGTGATATATGTTGTCTGTTATCAACTAAAATGTCATATATGGCAATGCACAATATACCTCAATGTATACAGCATGTTACTTGTATATAGTATA
s HiC_scaffold_1 72077685  81 - 233722169 ATCTTACGGGACCATTGTGATATATATGGTCCATCATTAACTGAAATGTCAT----------------------------TATACAGCATGTGACTGCTACACACTACA

a score=9971
s chr3            16516453 519 + 160039680 GTTTTTTTTTAAAAATATAGTTTAATGTAGTTTTATAGCAAACTTACAGGAACAGAACAGAAGACAGACAACATTAAAAGCATGTGTTTGCATGCAGTACAACTCAGTTAGAAAATGACAGTGAATGGATAGAAT----GATAAAAATGCTACAAACACCACTTAGTTGCCATTAATAGGAAATTTACTTATTTTTTAAAAATCCAAATGCTGGCATTGTCTAGAAAATTTTAACAGGTTTATTTATAATTGTTCTAAAGTTGAACTGTTGAAATGTGTTCACTGAAACATTTTGCTTGAATTAATGCTTTACATCTTGAATTTATATTAAATATTCACACACAAATGAACATGGA------GAAACTGCTAATACCTGATTCTGTCCCCTAGGTTTCCACTAGCA-------ATCATATACTTAAGTACCTTTGACCCCATGAAAAAAATATCTAACATTCAGAACTACTGATAACAGGGAGAAGAGGAAAAACTTTTTTTTTTTTTAGAATGAAATGTTTCCCCTCATAGTGGA
s HiC_scaffold_1 157051407 454 - 233722169 GTTTCTTTTGACAAATGT----TAGTGTATTTTAATGTCAAACATACAGAAGCAGAACAGAAGACAGGCAATCTTGACTACCTGTACTTGTTGACAG-ACATCTCAGC----AAAGCATATTGAATGGATGGAATATAGGGTAACAGTGCCACCAACA-CACTTAATTGCTGTCAGTaataaatttactta----aaaaatattcaaatgatgGCAGTACCCAGAACAATTTAAt-ggtttatttaaaattgttacaaTGT----------GAATGATTTTA-TGAAA----------------------------------------TAAAGATTCATAACCAGATGAAACTGGATAAAACGAACTTGCTAATAATCAATACTCTTCCTCATTCGTTAACTGGTAGCATTCTGTGATGTAATGAGATGCGTTTTGACATTTGAA------TTTTGACATTTGAAACTACCCACGATAGAAAGATG----------TTTGGGGCTCTGAGAACAAGATGCTTCCCACTTTGGTGGA

a score=8132
s chr3           17251277 166 + 160039680 tttgatctgatttgatttggtttTT---------ATGAGTCCTAGGGATAAGACAGGTTAGGCCCTCAAGCCACAAATCAAGCTAGGATGAAGAAAGGATGGCCATCTGCTCTGCTCCTGACTGATATAAGAACAACACCACCAACAAGATATCTCTTTGCCCATTGTCAGGAGG
s HiC_scaffold_1 37912067 174 - 233722169 tttgctcttattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGgg

a score=73108
s chr3            17269436 1806 + 160039680 TGGATTCACTTAATTCAAGAAAATGGGGAC------------AGAAACCTTCCCCAACTCCAAAACCCATGATTAATTTGTTAAACACCCTGCAAAAGATATGGAAGGGCAACAAGCCTTTTAAAAAATCTAGAAATAGTGATGAGGGAGTTGAATGA-AAATTTTGCTTCAGAACAAGAATGCTAGAACATTGATTGCAAGAGGAGGCAAGAATGTTAAAGCTTTCTTTATAGACTACAATGCCAGAGTTTCAGTATCAGACAGCAGTGGCCCTGAGTGCATACTGAGTATCA--------------------GTGTTGATATTGAGACAATTGGAGAAATTCTGGGAAAAAAAAATCATCTCTACCTTGGAAGAGGGCCTGCAGTTGTCATCATCCACTGCAATCAGCCAGCTCCTGCTGGAATCTGAC---------TGCTTGAATTAC------AATAAAGGAAGTGACTTTGACTGTGAGTTGAGACTGTTGGTTCATCAAA-TCTGGCAGGAGAAATTATTGGAGTTAAAGGTGCTAAAATCAAAGAATTTTGAGAAAACACTCAGACAACAATCAAGCTTTTCCAGGAGTGCTGTCCTCATTCTACTGACAGATTTGTTCTTATTGGAGGAAAACCTGATAGAATTGTAGAATGCATAAAGATCATCCATGACCTTATATCTGATTTTCCCATCAAAGGACATGTACAACCTTATGGATCCAACTTTTATGATGAAATCTATGATTATGGTGGTTTTACAATGATGTTTAATGACTGCTGAGGATGGCCTGTGACATTTCTCATGTGAGGAAGAAGTGGTTT-----------GAAACAATGCTTCCT----------GGTTGGCGTGGGCA--------TCCCGTGCCTCCTTCTAGAAGAGATCATGATTATATAAACCCCTGTCAAGGACATCCTCCTGCTT-CTTTTAGTGAAGGTGGCCAGGGTGGCAGTAGAGCCTGGAATCTTCCTCTTTCTCCACCACTATCACCAAGAGAAAGAGATGTAATGGCTAACGACAAAAGAGGAAGGGCTGGAGACTGCTATGATGGCATGTTTGGGCTCAGTGCTGATGAAATGGAGGGCTCTGCATTTGGCATGTGAAGCCCATCAGAATGGCAAATGGCTTATGAACCACAGGGAGGTTCTGGATATGATTGTTTCT--------------------------------------------------ATGGTTGTGGCTCATAC---CATGA----TCCTGGTGGACCTATTATTACTACACAAATGACTACTCCAAAAGATTTGGCTAGACATATCATTGGCAAAGGTGATCAGAAGATTAAGCACATTAATGATGAGTCTGGAGCATTGATCAAAATTGATGAACTTTTGGAAG-----GAAGATCGAATCCTTACCATTACAGGAGTATAGTACCAT--ACAGAACACACACCATTTGCTGCAGAACAGTGGGAAGCAGTATGTAGATGTTGAAAGAGTCTATTGCAAGGTATTTTCT----------------TCTTTTTTATAGTGTGAAGCAGTATTCTGGAAAGATTTTCTAAGACTAGTAAAGAACTGAAGGAGTCTTATATCTTTGTTTGTTTGTTTGTTTAACTGCTTCTGTTTAAAAAGTCAACATTCCTCTACTTTGTAGGTGTTCTGCATTTGAGGTGTAGTGAAATCTTTGCTGTTCACCAGATGTAATGTTTTAGTTCTTTACAG-----------------------------------------GCAATTTTGAA-------------------------------------GGGAGAAACTTCCCCCTTCCTGTGTAATTATTGTGAACACCTTGCTT--TGTGGTCACTG-TAACACTGAGGGGAAGGCACAGTGAGGAAAGTAATTATTCACATGTTCCTGGCATTTGTTCAGAGCAGTGTGCAGAATATAATGCTCTTTTGTAATAAACATTTTGTGATTTTGAAAATAAATTCAGTAAATCTAaataa
s HiC_scaffold_1 137323936 1958 - 233722169 TGAGTCcatttaacacaagaaaatggaaactgagcAGCCACAAGAAACCTTCCCCAACACTGAAATCAGTGCTGAATTTGGTAAATGTCCtacagaagacacagaagagGAGCAAGCATTT-AAGAGCTCTAGAAACACTGATGAGATGGCTGAGTTACAAATTCTACTTCAGAGCAAGAAAGCTGGGGCAGTAACTGGAAAA--AGGCAAGAATATAAAGACTGT----ACAGACCACAGTGCTAGTGGTTCAGTCCCAGACAGCAGTGGTCCTGACCACATATTGAATATCACCAATGTGAGTATTGACCACATACTGACACTAAAACAGGTGTAGTCATTCTG----AAGAAAATCATCCCTACTTTGGAAGGAGGCCTGCAGCTGTCACCTACAACT----------AGCTCCTACTTCAATCTGATGCGATGGAATGCTTAAATTACCAACACAATAAAGGAAGTGACTTTGACTGCAAGTTGATACTGTTACCTTATAAAAGTCTGACAGGAGGAATTATTGGG--TCAAAGTGCTAAAATCTAAGAACTTTGAGAGAACACTCAGACGACAATCAAGCTTTTCTAGGAAGGCTGTCCTCATTCCACAGATAGAGTTGTTCTTATTGGAGGAAAACCTGATAAGGTTGTAGAGTGCATAAAGATCATTGTTGACCTTATATGTGAGTCTCCCATCAAATGATGTGTGTAACCT--------CAACTTTTAGGATGAAACTTACAATTACGGTGGTTTT---ATGATGTTTGAGAACTGCTGCAG------------ATTTCCCATTCAGGGAAGAGGTGGTTTTGACAGGCTGGGTGCCCGTGCCTCCCTCTGGAAAAGAGGTGGTTTTGACAGGCTGGGTGCCCATGCCTCCCTCCGGAAAAGATTCTGATTCCATGAGCCCCTCACTGGGGACCACTACTCCTTCCTCCTGGTTGAAGTGGTCAGGGTAGTAGCAGAGCTTGGAATCTTCCTCTTCTACCACCACCAGCACATAGAGGTGGCGATCTAATGGCCTATTATAGAGGAGAAAGACCAGACAACCACTATGTTGGCATGGTTTCTTTCAGTGTTGATGA---------------------CACATGGAGCCCATCAGAAT-GTAAATGAC--ATGCACCACAGGGTGTCTCTGGatatgattattctttttttttttttaatttaaggagaaaagaaaagaaagaaaaaaaacagtgaaggggtacaagttatacagatatGATTATTCTTGGTGGACCTATTATTACTACACAAGTAACTATTCTTAAAGATTTGGCTGGATCTATCATTGGCAAAGGTGGTCAGTGGATTAAACAAATCCATCATGAATTGGGGGCTTCTATCAAAACTGATGAGTCTTTAAGAGGATCTGAAGAAGGGATCACCACCATTACA-AAACACAGGGCCAGAAACAGAAT-CACAGTATTTGCTGCAGAATAGTGTGAAGCACTCAGCAGA---TGAAGGATTCTAATGGAAGACATCTCTTGTAGTATGAAGCAATCTCTTTCTTGAAGAATGAAACAGTATTCTAGAAAGTTTTTCTAAGACTAGTACAGAACTGAAGGAGTTgtgcgtct-------tttttttttttaattgcttctgTTTAAAAAACCAGCTTTCCTCAGCTTCATAAGTGTTCTGCATTCAAGGTGTAGCGAAATCTTTGCTGTTCTCCAGATGTAACATTTCAATTCCTTTCAACAGGGTTGGGTCAGGGGGTAGCACGTGCAAAAACtaacattgaaattttaaaacagcagCAGAGTGAATGGATTTTTTCCATTATTGGTGGTTTAAAAATCTTTCTGCCCATGTAATTATCGTGAACACCTCACTTTGTGTGGTCATTGAAAACATTTGTGAGGTGGGACAAAGAGGAACGTAACAAT-----AGTCCCTGGAATCTGTTCAAAGCACTGCGCAAAATGCAATGCTCTTTT-TAAGAAgtgttttatggttttaaaaacaaatttagcaAGCCTTAAAAA

a score=69038
s chr3            17384279 3798 + 160039680 [encoded data, 4191 characters]
s HiC_scaffold_1 111205708 4028 - 233722169 [encoded data, 4191 characters]

a score=76290
s chr3            17384302 3711 + 160039680 tagaggacatcaagaag--gactttaataaatcacttaaagaaatacaggagaacactgctaaagagttac-----aagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttacagaaaaagaggaaaaaacatacaaacaggtgatagaaatgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAA-GCGAGGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTT-------GAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGA-----TTCCA--TAGAGAACATCGGCA-----------CAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATG---AAGATTTTCAACTCAAAGG-----TCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTA--CAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCA---TAGAGGGAGAA-------------------ACCAAAGTATTCCACGACAA---AACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA----ATAAC-AGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAG---------AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAG---CAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAG---ATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCT--CAATTCTGAATATCTATGCTCCAAATACA--AGAGCAGCCACATTCACTAAAGAAACTTTA--------GTAAAGCTCA-AAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAA-----GTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGT---GAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACC-AAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGG--AATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatt--aactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattag--ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactct-aacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagc-aatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaac--tcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaa
s HiC_scaffold_1 185148860 3612 - 233722169 tagaggaaatca-gaagtcaacctttggaactttctgaaataatagcaacagaa----gtaaaaaaatcaATGTGAATGTTCTCTAaggtaaaaaaggaaatgatattaaaaa--taatggaCTTTAAAGCAAACGCAGTTTAGAAATATAGAGAAGCT-CAGAAAAGCATGAAATC--------CCAACATAGGGAA---------------AAAACTAGAATGCTATGAAGCA-TATAAACAGAAGTCCTAGG-----------GGATTAAAGACTTTCGTCAGAAATATATGCAACAGACTGAATGAAGGTGAGGATAGAatatcaaatcttgaagacaggattgcagctagtgaccagCAAAAGAAAGGTATCTTAAAAATTGCAAgagatcacacacacaaaaaaaatc-aacccaa--caCTTAcgaaatgaagca------aagaagagcAA-CATAAAATTGTTTGGATTTAGTGAGAATGCCAGAGA----CAGTGCAAAAAGACATTTAAGAAACCGTC----ACAGAAATAATGATAAGAACCTCCAAAAtgtggataaaga-----atttga-cagcCAAATAATTTgggtagaactccaaataaccattactaaaataaatctacatgaaGGCACATAATtattaagattccagaaactcagcacaacaACAGAATAGTAAACATATCTACAGAAA--GGacacatcacctataaaagaagac--aacagaatcacagtagacttcttaCCATAAACCCTCAAATCAAAGAGAGTTTGGCATGAAGTATCTAAggtcccaaaagaaaacaatcttcaactCAGATTGttgtatcccacaaaactatctttcaaaaaaatagagaaataagacacttgaattacaaagaactgaagaaatttatgaccactaaaccaaATTCATATAATG-------------------CTTTGAAGGATATATTATAAAGAGATAATAAATACTGCAAACACatgaaca-----caaagaaaaagaagctcCCTGGTAGGGCCAGCAATTAATCAGAGGATAAAGagagggaaccaacaacagga------------------aaataatgagaaagataaaccagtacatatcagttataaccatcaatgtgaatggtctcaactcaccaatcataagaaacaaactggcagaatggatcaagaagtgagatctaacaatatgctgcattcaagaaatatgttttaactcaaaaatttatagac------taaaagttaaagaatgaaaaacaattctccatgctacaggaacccagaaaagagcaggaatagttattctatttgtagaaagtgtgaactttaaaccaaaactgatcaaaagagataaaaatgt-cattacatacttgttaaagGTAG---CCcccaagaaaaaagataacaatcataagtgGACATGCACCAAACACACTGATGCAcataattacataaaacaaatattaacacacatgtaaaaccaataagcac----------taacacaattgtattgGGGGACCTCAATAATCCATTTTCAGAAATAGATCAatcagagaaa---aatcaataaaggaaTA---TCAGAATTATAGCATGCCTGTGAT----CAAATGGATATGACAGAAGTCTACAAAGTATTCCACCTTAAAACATCATAATATGCATTATTCTCAGCTTTACAttgaatgttctccaaaatagaccacatatttgcctacaaaatatgtttaaataaatgtagagGAATTGAAATTCTTCTATGCATACTGTCAGACCATAGCACAGTGAAATTGGAACTCAGCAACAAAAGAAGCCATAAAAACTGCATAAGCACAGGGAAATTAAGCatc---cttttgaacaaccagtgggtcatagagaaaatcaa-aatgacattaaacagtatatacaattaaacaataataccAATAAAACATACTAGAACATATGGGATGTGATGAATTTAGTCCTATgatggaaatttatagtgatgaactCTTACATCAGGCCAAAAGAATGAACtca----aacaacttaatgttgagcctcaaacttctagaagaacacaaa--aatcaaacccaaaccttatataagagaggaaa---------ttaaaggtaaagaaattaatgcaattgagactcagaaaacaatacaaagaatcagtgcattaaaaagttggttctttgaagtaataaataaaactgataaaccatTAGGAAACCtcataaaaaagaggaaagaagaaatacaaattcaaagatttaggaatgtaaagagaaaaatcacaagggatcctacagaaatccagaagataattAATACCTACTATGAGAACTTATAAT-----AAGAtgaaaatcacagaagaaatgaacaaattcctagaCACAATTGAACtgccaaaaactaaataaatgtta--taaaaactctaaataacctgatatc----aatgaaattaaaaatataattaaaaat-tactaaC---AAAGAGTCCAGGCCCTAACAGAGCCACTGTTGAATTTTAcaacaaatttaaagaagaactaaTGACACTAATGTtgaaactctttaaggaaatgGAAAGGAAGCCTATACTTTCAAAATCACTTCTGAAAGCAAGTAGGACCCTAACTCTAACACCGGAGAagaaccaaaatgaaaaagaatactaCAGACCAAACtctgtaatgaacatagatgcaaaaatcctcaagaatatattagcaaacagaacgcagcaaatcatcaagaggattatacactatgaccctGTAGAATTCATACCAGagattcagggatggttcaacattctTGAACAAATCAATA--------CATGTTAACATAATCAGAGACAGAAATCGCATGAtaatttccatagatgcagaaaaagcatttgat-agtTCCAAAAttgattcatgataaaaaccctacagaaaactggataGTTc---gtttttacctcaatctgataaaaaccatctgtgGCAAACCAGCAGctaacatcttactaaatggtcAGACACTGAAAACttgcactctaaaatcaagaataagacaaggatgtccactgccaCCACTCTTAtccaatataattctggaaacattagccagagcaattagaccagagaaagtgataaa---aatattaa---gaagagaagaagttaaataatcattatttgcaaatgacatggtaTACTACAtaaa-gatgccaaaaactccaccaaaagacctGTAgacttaataatcaaattcagcagtgtagctggatacaaagttgaaactaaaaaaa---aatgac--------------------aacaaactcacacagaaagcagcaaaaaaccacaccctttataatagcatccaaaaatctgaaatgcttaTGAACCAATctaaacaaaggaagtaaaatatttatacactgaaaattacagtactctgtaaAAGGATATTAAAGacgatatcagaaaatggaaaaatatcccttgctcgtggatagaaagagccagtatagtgaaaatggccatactctcaaaaactggtacacagatttaatgcaatagtgatcaaaataccattagcatactttgAAGATCCagataaaataatcctaaaactcctttggagacagaagagatctaaaataacaaaagcaatcaatTCTGGGCAACGAAAGCAAATtgaggcatctcaatccctgatctgaagttatattacaaagctactgtgataaaatcagcgtggcactggcagaaaaaaaaaaaa

a score=84409
s chr3            17384414 4733 + 160039680 [encoded data, 4993 characters]
s HiC_scaffold_1 122750010 4727 - 233722169 [encoded data, 4993 characters]

a score=22744
s chr3            17384440 1812 + 160039680 catacaaacaggtgatagaaat----------gaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGCGA--------GGCAACACTAGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGAGCATCAGCAA--CAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGAC-ACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAA----AAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACAT--ATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAA-GAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC-------AATTATCATAGAGGGAGAAACCAAAGTATT-CCACGACAAAACCAAATTCACGCATTATCTCTCCAC----------GAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGA----AGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAA-GCCAACA-TTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAA
s HiC_scaffold_1 128746890 1734 - 233722169 CagagaaacagattttaaaaattggatagtCTaaccaaaacagttcaaaatcTGAATGGCATACTCAAAAGCATATGTAATACTCAAAAAGATGACAAACAGAAACAtctgaaataaaaa----agtatgtAATTCTTATATTACAGAAGTGatcaatgtgaagacagaatatttGAGACTGAGTGTAAAATAGTCAGT--------TTTGATAAAGATCTTGgtcaaagaaaccaaaaa-----gaaaat---aagaga---------aaactgtCCAGcagctacaagatgacaagaagaaGACCCATC-TAAGGCTAACTGGAGTGA--GAGAAT---------CCACACATTGATTCA-CAGGCATGTTTacagaaatcataaaagaaaatattccaaa-ataaggaaaga-----atttAAA-GTATAAGTGACATTTAGAG-----AATaga--aaacaagatttttaaaaagctcactTTGGTGCATCCTTATCAAAATaagttttccagaaaaaaaaactagaattttaaaaatagccagataaaaa---caaa-aacatgcataAATGTAAATCAATTAGAATTAcaccagacttctcaacacaaaccctagAGGCCAAAATGAAcaaggagtgaagtatttaaagctCAAAAAGAA-ATAACTTCTTGTCCAGATTAAATTATCCACCAAAGCTAACCcagcaaagctatctttca------aaataaggtatttccatgaaaaagatgAGCTCAAGATTGACTGCTAAACCAGTGTAAGAGAAAATACTTCTCTAGAGAAATACAACTAAAAATACAGAGGAAACCAGTGAGGTCAATGGGtaaatagcaacaaaaatatcatgaaacagaaaac---aaaggatACACAGACAGGTGATGAAGGC----------------AATGATAGTAAATAAACA---------------ATTTCTCAATGTTAGTGGTCTCAACTTTCCAAATAGAAGACAGAG--TGGCAGACAGAGTCAAAAATACAGAATCAATAGTCAGTTGTAATTAAGAagc--atctaatccaaaaatatattcagagactaagagttaaaggatgaaaaacatt-------GCATGCAGCATGACTCCAAAAACTAGCAGTGGTAGCAATTTTCATATCAGGCATAGTAAACTTCAAGATAAAATTGATTAGAACTGAAAAAG---GTTACTATATGCTatttaaggaaacaatacaacaagaagagataacattgACAaacatatgtgcaccaaatattGGAGCAcctatcttcataaaacaaaaactactgaaattaaaaaatca-ataaacactAACACA-TCACAGCAGGGTGTTTTCACATCCCACTTTCAcaaacaaatagatcaactaaacaaaaatgtaaggaaagaaatgaaagaattt-caGAGCTGAACCACATCCTTGAACTTATAGACTTAATGGATATATATGGAGTATTCCACCCCTTTACAACAGAGTATA--TTCTTTTCAGAAGCATATGatgcattttccaaaatagatcacatattagTCCATAAATCCTccttaaataaatagaaaagtac---------CATATGCATACTATCTGACGACTGTGCAATTAACATTGAGacaaattacagaagaaattctGGAAAAGACAATAGTTCcca--gaaaattaacaatatacTTCTAAACAAC-------CAATGGATGAAAtcaaggaagacttttaaaatttctggaaatt--ATAACAATGATAATACAATTAGCCAAAACCTTTGGGACACTATAAAAGTAGTTCTAAGAGGAAAATCCATTGCAAATAGAgctcacattaggaaa

a score=20583
s chr3            17384584 1623 + 160039680 ACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATG-GAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAAT-CCAGGACACAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC-----------------CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACT-------AAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTC-TCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAAC-CAAATTCACGCATTAT-------CTCTCCACGAATCCAGCCCTTCAAAGGATAATA---ACAGAAA----AAAACCAATACA----AGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAG-------CAACAATTA---CTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAA--ATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCA
s HiC_scaffold_1 150311093 1575 - 233722169 ACAGAGTGCCTGAAATTGAGAACAAAATAGTGGATTAGGATGAATACTCAAAGAAACTC-----------CAAGGAAtataagagaatgagagacaat------------tATCCAACAGGTACTATGTGACAATAAGAAGGCCAGTCTAAGGCAAAATggattaagagaaaaattaaaatat--aacacaGATTT---ACCAATATGGTTTAAGAAATCatagaagaaaaatttccaaatataagAAAGGAGTTTAAAA--AACATTATTGATGCTTACAGTACAGCAAACAAACCtaacaacacaacaacaaaaaacaaagaagaagctTACCAAAGTACATCCTTACTAAATTATGAGatgtccagaaaaaaaaatgacaatagaaTTCTTttacaaacaaaagaagaaa---acatcacaCATAAAGGTAAACCAGTTAGAGTCACAGCCTACCTCCTAACATAAACTGTAAAGGCCAGAAGAGATTGTAGTGAAATACCTCACATCTTGAAAGCAAATAATTT------------------TCTAGCAAAagttgtccttcaaaatagatggagaaataaagtttCTCCATGGAAAAACATCAACTCAAAGGATATATGAATGTTAGCCATCACTAAAAATCATTTAAGAATATTCTccacagaaataacaaaactgactCAGCTAAAAACACAGAGGACA---TGAAAATTCCAAGTAAG--ATCAATGAATAAAGAGCAACAAAAaatgtcaggaaaagaaaagcaaacattcaCCAGCAGATAAAGAAGGCAGTTATATTCAAGAATCAACACATCTCAGTAGTATCTTTTAATATTAACAGCCTCAATTCTCCAATTAGAAGACAAAGATTGAGAGAATGGATTGACAAACAAAACCCAACTGTC------------AAAACTCATCTAATctaaaaagatattcacagacaaaaaattaaagggtagaaaacaacatttcatgcaCTAGGACCCCCAACACAAGCATGGGTAGTATTTCTAATACCAGAGATG-CTAAATTCAAACTAAAACTGattagaagacagaaagaaaagaactacTAACTAGTCAAGTGAACAatccaagaaaaagagataacattaataaaaatatatgcaccaattcTTGGAGCACCTATGggcataaaacaaaaactgctgaaGTTAAAAGATCAAGTAAACACTAATACAATCATAGAGAT---TTTTAACACCCCACTTT--Tccagagacagatcaactaga---aaaataaaaaaaaaaattcagagctaAACAACACT-CTTAAACAAAGAGACTTAGTGCATATATACAGAGTATTGTATCCT-CTGCAACAGAGCATACATTTTCTTCAATAGTTCATGTTACTTTTTCTAAAACAGAACATGTACTAGTCCACAAAGCTTgtgtaagaaaatacaaaagaattaaaattacccAAAGCAT--------------GTGCAATGAAAATAGAAGTCAAAGACAAGAGAATGTTTGTGAAAAGCAAAA--TCTCCTGGAAAATTAACAGCCTATCCCtaaataa--------acacagaagaaacc---aAAGAAATTGACAAATTTCTGGAAGTTATTGGTTGCGACTGTACAACTTATTGAAATTATTGCAATACTATAAAAACA

a score=15056
s chr3            17384643 1067 + 160039680 GGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAA--------TATCCAGGAAATCCAGGACA-CAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAA------TGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG--------GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCC-ACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAA-------AACCAATACAAGAACGCGAAC--AACGCC-CTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAG-----AAGACAGCCACAAGAACAGAATGC-CACCTTTAACAACTAAAATAACA--GGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACT----ACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGG-----ACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAA
s HiC_scaffold_1 185221884 1079 - 233722169 GACAAAACAGTGAATTAGAATTAAGAGTTCAAAGAAGCTATAAGAAAAAGAATAGGACTACATAGCAGCTCTTGGATGGCAACAAGAGGAACAATCTGAGGCTGACTGAGGTTAGAGAAAAACTGGGAGATAGCACGGAGGGATTCA-CTAACATCCTTttagaaatcatgaaagaaaatttcccaataacaagaaaacaatttaaagtacAAATAAGCATT------GCTCCTAGAACACCAAACAATTACGATGGGAAAAGAAACTCACCAACACACATTCTTATTA-AGTACCAGATATCC--agcaaaaacacaattttaaaagcagtcagaaGGCAGTGGGAAAAGATC---------------TCAAGTCTAGGTAAATCA-GctacacttctcaacacaaacactgaAAGTCAGAAAagcttggagggaagtatttcaagtcctaagaACAactaactttcaacccagattaattTACCTAGC-AAATATTCCTTCAacatagatggagaaat-aaagtatttctatGTGAAAGACCAACTCAGAAAATATATGAGTGCTAAGCCAGCTcc----agaaaaattactttaaaatattcttgacAGATACAGTAAATCAAATCAGATGCAGCTGAAAACAGAGGGAAACTGGTGAGGCAATAAACTAAACAGCAACAAAAGGAactgggaaaataaaaagcacataCCAGGAGACGAAGACGGCGACGGTAGTAAATGACACATCTCAGTAATAGCTC--AGTGTTAATGTCCTCGACTCGCTAATTAAAAGATATAGACTGACACACTGACTCAAAAAACAGAATCCAATAATCTGTTCCACTCAAGAAA-TCATCTAATCCAAAAA---AGACATTCTTAGACTAAaagttaaagaatggaaaacaacattttatGAATCAGGACCCCTTAAATAAGCAGAGGTATTAATTCCAGTATCAAACATGGAAAACTTCAAATTAAAAttgattagaaatgaaaaagaaggtgtcTCCACTACATACTAGCAAAAGGAACAACCCAACAAGAAGAGAGACTACAGataaacatatatgtaccaaGTACTGGGGCACCTATCTTCA-TAGGGAAA

a score=20621
s chr3            17384648 1740 + 160039680 AACAATCAAAGAAAATGGAAAATGCAAAA-AGATCCTAACTCAAAATATCCAGGAAATCCAGGACA-CAATAAGAAGACCAAACGTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGA-AGAAAACTTCCCAAATCTAAAGAA------TGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAG-GTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAG-CCAGAAGAGCCTGGA--CAGATGTTATACAGACACTAAGAGAACAC-------AAACTGCAGCCCAGGCT---------ACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGT---AATCCCTCAA-----CAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATA---------ACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACC----------------CAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGT-------AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAA-CAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCC--TAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCC-TTCAA---------GAAAAAACGGG------AGAGAGCACATACTAGCAGCTTGAC---AACACATCTAAAAGCTCTAGAAAA-----------AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA----------TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 155665285 1713 - 233722169 aaaactaaaaaaaaagagagtatgGAAAATGGATCCAAGGAAAATGGATCCAACAGCTGTTAGACAACACAAAGAAGACTAACAGTAAGTGGAATTAGTGAAAATCAGAAGACAGG-------------------GAAAACGacataaaaaaatctgtttacagaGCTTATATCCAGTATGAAGAAACAACATAACACGCAGATAAGCA------AGATATGTAGATTCCTAAACAACCATAACCAGAAA-GAAGTTCTCCAGGACACAGAacagtcaaaattccagaagtccaacacaagaacagagtcTTAAAAAGCGTTGGAGAAAAAGCAACACATCACTCCTAAAAGTAAAagcattagaattacagcagacttctcaacaaaatcCTTAAAGGGCCAAGAGAGGCTGGAGTTAACTGTTTCACCCTCC--------ACACCCCCTTTAACTTTCAACCCAAACTCTTATAATTATTATGCCCtacaaaatt-----ttttcaaaatcgGTAAA--CATATCTTTCAATGACACAATGCATCTTATGAAATTTATAAACACTAATCAAGCACTCCAAAAACTTCT--CAAAGATAAcccagaaaga-------aacaatg--------aaactgagaatgtcaaaatgtttaaagaatgaaaacatcagGTAGGATGAGCAGTGAAGCAGAAGAA-----TCAACAACCAGAAAATAGTGCAGGACAGGAATAAGTAAAAACCTTTCAG-AACAGTTCTCAAAGTGAGAGGTCTCAAATCCTCAAACAAATGGTACAGATTACCAGATTGGAT-CATAAACAAATCTGTATTCTGTATTTAAGCAACACTTT-TAATCCACAAagaattcat---agactaaaaatttaaca-------------aaaga----aaaacaatattccaggGAACAAGAGCTCTAAAACAAGCCAGAGTAGCTATCCTGGTTTCAGACAAACTGGATTTCTAGCCAAAATTGATCAGAAAAGGTCAAGAAGGTCACTATGTATTTGTTAAGGCAACAATTCAAGGAAACAAGATTACAATTACAAACGTATATGA-CTGAACACTAGTACACCCAACTTCAAAAGGCAAACACTACTGGGCACAAAAGATTAGATCA-ACATCA------ACACAATTCTAGAGGGGGACCTGAGTACCCCACTATCACAAgtagaccaactagacaaaaaaaaaaaaaatcagagttccA---AAACT-----------TCTAACAAATAGACataatagatatatacatagtATTCTaaccaataaaatagaaaaatacac--ttattttGGCCATACACAATGCTTTCTACCAAATAGAACATACACTAGCTGATACAGCATGCTCGAGTAAATACAAGAGAATTGAAATCATTCTATGTGCATTATCCGCTCATAGTacactgaaactagaaatcaatggcaaaataaaccat-GAAAGTTATTG-AAACGTGGAGA-TAAACAATATACT------------CTTGATTAATCAATATGTTACTGAAGAAATTAGGAAGCTCCTGAAATCAAATGCCAGT------ACAACACATCAGAACCtacgggacacaatgaaagcaacactAAGA-GAAAGTTCATAGCTATGAATGTCACtcaaattacaaatgaaaaaaataactttacaGGGAGGAAATCCCAGTGACTCCACTTTAACAAATGTTAAAAGTTGACAAAATTTATAATGAGCAATAAAGCACTTTGACCTTTGAAATGATGAACTCAGAAAACCTCATCATCTAATCA----CAGG---GAAGCCaaacaagaaaaaccaaaaa

a score=18851
s chr3            17384735 974 + 160039680 GATAATAGGAG-----TGGATGAGAATGAAGATTTTCAACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTT-----CACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTC-----AATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAA---AAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAA----------ACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAG--CAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACT-----GGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCT----CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAA
s HiC_scaffold_1 125873502 963 - 233722169 GATAATAACAGAATTatagaaaaggaggaaaatttaaaa---gaaatttcaaaagatgTGTTCACTGAAATTATAGTATAAAACattccaaatataggaaaagaattcAATATCCAAGTATAGAAGATCTGTAGAACCCAAAATAGCCACGACCAGAAAAGGAGCTCTCCATGACACATcttaatcaaaattccagat--agtcaacaaaaagagaatactaaaagccattagagaaaaacAGCAAGTAATCTACAAAGGCTATCTCATCAGAATAATGGTGAATTTCTAAGAACAGCAGAAAGATTAAAGGACAGGAGAGCTTGTTGTGAAgtttt-caaaccctaaaagaaaacaactatcaGCCTAAGCTTTCATTTCTTGAAAATCACACTTCAAAATTAATACAGAAGGAATGAAT------TTCCATGATGAAGAAAACCTAAAGAAATCCATGGCCACTAAACCAGCATTGCAAAAAATACTTAAGGGAATTCCAGACAGAGACAAGGAGGTCACAAGCATC----AAAAGTCAAAAGGAAAGTTTACAAATAATTGAGAAAgtagtttaaaaaggaaaacataaaggaaTAAACAC------TGGAAAATGATACAATGGCAAATTCAATAAACATCTCACAGTGAGAACTCTCAATGTCAGTGGCCTTAACTCTCCAATTAAAAGGCACAAACTGGCAGATTAAATAGGGCAGAAAAATGAGACCATATAT-----TGCCTAAATGAAACACACCTCATCCAAAGAGAAATATATACACTG----AAAGTGAAAGAATGGGAAATGATTCTCAATTTAACCAG--AGACCAAAGAAAGAGGAGTAGCTATCTTATTTTCAGACACAACAGACTGC--AAGCAAAATTATCAGAAGAAACAGAGATGACCACTACATAATGATAAAGGGaacaataat---------------aattacaaatatctatgcaccaaatctCAAATGCAccaactttataaaataa

a score=89943
s chr3           17384766 4280 + 160039680 [encoded data, 4470 characters]
s HiC_scaffold_1 71341300 4226 - 233722169 [encoded data, 4470 characters]

a score=62882
s chr3            17384767 2862 + 160039680 AACTCAAAGGTCCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGA--CACATAATAATCAGAACATCAAATGCACTAAATA-AAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT----AATAACA-----GAAAAA---AACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCT----CAACAAACCTAA---AAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCC---TCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAG-ACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAA-CAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCT-GATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCT--TGACAACACATCTAAAAGCTCT---AGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC-CTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG-ACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCT---GGAAAGATCAG--------GAATTCAAGGCCAA-----------TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaa
s HiC_scaffold_1 201749327 2678 - 233722169 AACTGAAAGTTTCTAATAACA--------AAAGTCAAGggaaaaaacttcccaagcagagaaagagaatttgacatacagataagtgaggtatatggAACTCCAATTAGCTATGATCC--AAATAAATCTATCCCAAGTCATATAGTAATTAGGATTCCA--TAAATTCAACacaatacagaatattaaaagatacaagagaaaagaaacaaatcacatatatatgaaagcccatcagaattacagcaaacttcctaacacaaacccttaagtcaaggagagtttggaatgaagtattacaatcccaaaaagaaaacaaccttcaacccagactgatgtacct-gaaaaactatctttcataaTTGATGTagaaaaaagatactttcattacaaagaacatctgaagaaatccCTGAACACCAAACCAGTACTCCAAAATGTTccaaagaacattctagaaagaggtaACAAAGACTATAACTCCATGAATCCC--------AACAGGATG--AATCTACATGGCAACAAAAGTAATTAAAGAAGGggaaca-aacaacagga-------------aaataacatgacaaggatgagtcagtacatatcagttataaccatcaatataaatggtgtcaattcaccaatcaaaaga--------aacagaatggattaagaaataagGTCTAACTagatgctgcatacaagaaatacatttaattcaaaaagaaattcatagacggAAAATCAAAGAGTGAAAAACAATAGTCCAAGTGatggaaacccagaaaaaagcaggggta----ttTTATGGGCAGACAAAGTCAATTTCAAACCAAGAAGTATCAACAGAGACATAGAAGGTTACTTCATACTTGTTAAGGGAGCAATCCCAATCCAAAAAGAGATAACAagcataaatatgtatgtaccaaATATCAGcacacacagttatataaaacaaatattaatgcacatgaaaaatcaagtaagcactaATGTAATTGTGATGGGGGGACCTCAACACAC-----TCAGAAATAGACtagccaaaaaaatcaaaaacgaaa-----------------tatcagaa---ataaatcaaat-----------------------------------------cagaatacacgttcttctcagctgcacatgggatgttctacAAAATAGATCACACACTAGctcacaaaacatgcttaagtaaatatgaAGTAatggaaattatcccatgcatactatcagaccatagcacaaTGATTATAGGAAcacaatggcaaaagaaaccacaaaaacttcgtaaatacatggaaa-taaataACCCTCCTGTTAACAA---ATTGGCCACAGATGAAACTGAACATCAAGtcaaacaatatctacaattaaatgagaatgccaatacaacatacaaGAATTTAAGGGACACCATGAAAGCAGTCACATGAGGGATATTTATAGAGGTG-------TCAAGAC-------------TCCCATATCAGAAACTGCTAAGGTTGAACCTCCAGCTTCTGccagaagaagagcaagtcaagtc---caaagctggtatgagggaagaaattataaagagcag-----aaattaatgcagtcaAGACTAAGAAACTAATGCAAAGAATAAATGAACCAAAGAGTTGattgtttgaaaaattaaataaacttgacaaacccttagtcaaccttatcaaaaaagtaaaaaaaaaaaaacctcaaatctATGCAGTTAGGAATGGCatgggtgaaatcacaacagatcctgcagaagttcaacagatcatcaatatctactttgaaactctgtattcttataaaatggaaaacacaggaaaaaatggacagattcctagattcatatgaattaccaaatctgtatcaagaaga---------tataaataa-cccaaatcagtcaatgaaattgaagacataattaaaaa-----ctaCCAAGAAAAGCCCTGGACCTCACACATTCACAGCTTAATTCTCTAAGAAATTTGAC-ACTATCTAATGCCAATAC--CTTTaactctttaaagaaaacaaaaggaaagcaatgtttccaaattcattcctcgAAGCAAGTATTACACTGAaatcaaaaccagagaatgatCTGACTAAAAAAAAGAGCTACAAGTCAATTCCCCTAATGAGTGTAGACAGAAAAATTCTCAGAAAGTTAcagacaaacagaatgtag------------------------------caagtAAGATTCACCCCAGGggtgcaaggatggttcaacatatgcaaatcaataaatgtaatccaccatatcaatagaggcaaaggacaaaaaccacatgatcatctcgaTAGATCCAGAAAAAGCGTTTGACAAATTCCAACACCCACTCCTGATAAAAATCCTTCAGGAATAATTGGATACAATAGAACCCAACTgcaatagatgatctttatctcaatctgataaaagc-----------caccaaTAGCCAACATCCTACTAActgcacaaaaactgaaagctttcactctaaaataaa-----aaacaaggatgtccactgtctccactcttattcagttTAGATCTgtaaactttagccagagcaataagacaagagaaaaaaat-aacatgaaaaagattgGAA---GTGAAGTTAAATTA------TTTGCAGgtaacatgatattctacataaaagaccaCAAAAACTTCACCAGAagtcttctagatttaataaccaaattcagcaggaTAATTGGACAcaa------------------aatagcattcctatatacaaatagcaaactgaacgagagagaaattagggaa-----acctttcataatagtatcaaaaaaaaaaaaa

a score=27480
s chr3           17384795 1749 + 160039680 CAAAATTA-TTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA--ACC-------AAATTCACGCATTATCTCTCCA-CGAATCCAGCCCTTCAAAGGATAATAACAGAAAA---AAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAA-----------ACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAA--GGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA--TGAA-------ACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAA---AGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAA--CAGAAAGCCAACATTCACATG---GAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA---CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC-------CCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAA---------TCCTAATTAACAAAATCAGAAAT----GAAAAGGGAGACATAACAACAGATCCTGAAG
s HiC_scaffold_1 18451917 1740 - 233722169 cAGAATTAATTGCAAGAACATTCCCAAGTTTAGCAACAGAATCTGATATCCAGATAAGTGGGGCATATAGAAATTCAAATAGCAATAACctaaataaatctatacctagcCATATAATAAACCATAGactagaaattcagcacataaacagaatatcaaaagctgttagagaaaaag--taaaagatctattaaaaCAT-----TTAGAATTGCAGCA-ACTTCTCAATAGAAAGCCTCAAGTTAAGAAaagattggagtgaagtattccaagacttaaaagaaaacaacttccaacccagattg--atgaccttcaaaattcac-------------tgaaaaataagatacttccataaccaAGTACCGCTGAAGAAATCCATGTTTAACTAATCCAATTAAACCAAGgttagaaagagtactgaaagatattctagacagagacgAAAGTGACTGCAATTCCCTgaacaacaagagaaagaaaccatcaggcaAGGAAAGCGATTAAACAAGAGGAAATATCAGTAAACAAACAATagcaa----aataacaagaaaaagataagacaatatatataatttatagtcaT------ATACAAATGGCCTcagttcatcaatcaaaagaaactgaTTGGCAAAATGGgtaaagaaacaagatccaacaatatactgtagTCAAGAAACAAAtctaactgaaaaaaagaaattctgagg-aaaggaaaagtatttaaaacaattttccatgcaacaggaaaccagaaaaaagcaggaataggtattctgtttgcagacgatttgaaaatcaatccaaaaatgatcaaaagagatttttaaaagttccataTATACTAATTAGGGG-AAAATTCAACatgaagagatagcaatcatctatatatatgtatcaaatatgGGTGTATCCAACTATAGAAGACAAATATTAAttaacataaaaaatcaaatatgtaataacacaattgtagcaagagaccttaataccccattgtcacaaag----agatca-----------actagacaaaaaaacaaagaaataaagagaactgAATTGAATCTATTGACAAATGGACAtactagatgtttacag--tgtttcAAC---AAACAAATTCAGAATACACCTCATTCTTGGTGCAT-ATGGGACATT-TCTAACATAAACCATATACAAG--CccatataatatttacataacttcaaaagaatttaaattatcccatcCACATTATCCAACCAttgtgcactgaaattggaaattaatgacaaaaaagaaagtgctaaaattacacatacacatacatgtaaataaataacatgctcttgaacaatcaatggttcacaaatgcaattaa-aaagaaattaaacaatatctaaactCAAACAAAAATGCAGCCACAATTTACCATAACCTGTGGAACACAATGGAAGCAGTCTTAAGCAGGAAATAtacagcagtgaattctcacattaggaaaatgtAATGAGCACCAATAAATAAC--AATGTTTCACTTCAAGGTTCTAGAAAATAAAGAG--CAATCGACATCATAGG-TTATacga-aggaaaaaattaaaaagctcagagcagaaattaatgcaattgagtctaagaaaacaatac-gagaactaatgaatcaaagagttgatgcTTTGGAAGAATAAACAACATTGATAAGCTAGCCAACCTtaacaaga------aaagagaacaaagaaagaaactgggacttcctgaaaaagcaa---agaaatatgggaagatgaagaaacaacaaaaagttcccagg

a score=21277
s chr3           17384796 1516 + 160039680 AAAATTATTGAAGAAAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAG-TATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATC--CCTCAACAAACCTAAAAGAAGA-----------------------------CAGCCACAAGAACAGAATGCCACCTTTAACAACTAA---AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACT-CGCCAATAAAAAGACATAGACTAACAAACTG------GCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCAT----CTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGAC-AAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTT--CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTG-GGACACAATGAAAGCATTTCTAAGAGGG---AAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA
s HiC_scaffold_1 15467768 1426 - 233722169 aaaatcatagcagaaacaattttaaatctAGGGAAACAATTCAGTATTCATGTAAATGAGGCATAGA-AACCTCAAAGAGCTACCaccagaaaaaaa--tctacatattacatcataatgaaaatttcaaaaattcagcacaaagacaaaatactaaaaactgttagagggAAACTTCAAATAAGCTATAAAGGCAAACCTATCAGAATAATAACCAATTTCTCATCACAAACTTTAAAGACTAGGTGAGCTTGGAGCAATATTTCTC--GTACTAAAACAAAAGAAGT--CCTTCTAGATTTCTGTATCCTGCAAAATTCTCTTctaaaattgatagaaaaaatgaagatttttcatGACAAAGTAAACCTAAGGAA------ATTCACCAA-CCAAC-------------ATAgcaaaaaaatttcaaggca--------------tccCTAG-AGCGACAGGGAGTCCATCAGTCCCAAGGATCCCCAAAGAAGGAACATATTTAACTGGGAGGGTatttaaataagatgaaaaaatGAAACTCAACACTGGAAAAGTAATACAATGACAAATTTCAGCAAATACCTTACAGTAACATCTGACAGTGTGAAT-GTCTTGGCTACCCCAATCAAAGGACACAGAGGGGAGGACTGAGTCATGCCACCC---CAAATTCCAGACCTGTGTTGCCCACAATAAATACAGGTTATTCACATAAAACCACATAGGCTAC----AAGTGAAGACATGGGAGATGATATTCCATTC-ACTGGAAGTCCAAAACAAATATGCCTAGCTATATTATTTTCAGA-AAGACTAACTTCAAGCTAAAATtaattagaagagacaaagaaaagccACTTAATATTGATAAAAGGAACAACTTAACAGGAAAGagtaacagttataaatatata----------------------------------------ttgataGGTATCAAA------------------ACAATCATGGTAAGGAACTTCATTACACCAC-CTCATAAATAAACAGGTCAGTCACacaataaattaacaaat---------aaatatcagTCCCTGTCATGCAAATAGTCTTAACAGATATCTATAGAGTGTTTCTTC----AACAATAGAATGCATATTTTTATCAGTAGCCTATTGAACTTTACTCAGAAAGGACCATATCTTAGGACCTAAAGCATACTTTAGCAAAGACTA----ATTGAAATAATCTCTAGCATACTAGTACATCACAgtagaatgaaattagaaattaacagcaagaaaaaacacagaaactacACA-AAAAATGGAGATTCCATAATACACTTGAATAAACAAga----agtcacagaagaaataaaataagaaattaaaaagttcctaaaatcaaat---aataggaacacaaaatactaaaacttATGAGGAAATAATGGAAGTAGTTTTAAGTAGGTCTAAGATGGAAGTCTTTTCtgactttaaaaca-------ataaaacaattactaataatCTAATTATGCATCCCAAGGCCttggaaaaacaagaa

a score=35790
s chr3            17384800 1859 + 160039680 TTATTGAAGA-------AAACTTCCCAAATCTAAAGAATGAGATGCATATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG-GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTG-CAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAAT----------AACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAA---------AAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAA---AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGAC-ACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTA-ATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT---TGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGA-CACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAG---GAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACT---CACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCC---TTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGA--CAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGA
s HiC_scaffold_1 188662038 1803 - 233722169 TTATTGAAAGCACATAGAAATTTTCCAAATCTAGGAAAAGAATTCAGTACTCTAATAagagaggcatatagaaccccaaatagccacaaCCAGAAAAGAAACTCTGTATGACACTTCagaatcaaaattccagaaattcaaccaaaggagagaatactaaaagatgttagaggaaaaacagtaaataatcTGTAAAGGCAAGCATATCAGAATACCAGCAGATTTTTCAGCATAAACCTTAAAAACCAAGAGAGCTCAG--TGAAatttttcaagccctaaaagaaagtaACTTGTCAAATCAGACTTTTATACCCTGCAAAATAAGCCttcaaaactgatagagaaataaagatTTTCCATGACAACGAAATGCTACAGAAAtacatgaccactaaaccagaTCAGCAAAAAATATTGCAAATCCTAAACAGAGGCAGA-GATTTCACTAGCACAATGAGTGCCAAAACAATACACATCTAAGTGGGAGAGTAGT---Taaataaccagaaaaaaata-------aaggagtcaATGC-----TGGAAAAATAATACACTGACAGGATTCAGTAAACAATTCGCAATAATGTCTCTTAATGTCAACAATCTTAACTC-CAAATGTcaaaagacagactggcagattgaatcaaaaatcaaattttaatcaTGAGCTGCCTTCAAGAAACACACCTCATCCAAAAGGAAGCACAAagactgaaaaatgaaagaatggaaaacactACT-CATGCAATCAGAACCTAAAGGTCAGCAGCACTAGCTACCTTATTTTTCAGACACAACAGATTTCAAGACAAAACTGatgagaagagaaacaaatgacCACTATACACCAGTAAATGAAACAATTCAATGGGAAGAGATCTCAATTGTtaatataaatgcaccaaatgtTGGCATGcccaactttataaaacaaaaactgttagaCATATAAGCACAGGTAAGTGCA----ATACAGTAGTAGCAGGAAAATTCAATACTTCACTTTCACAAATAGGTAATT-----AGACAGAAAATA---AGTGAACTATCAGATTTAAACCACATcattgaacaaatggacttaatagatatctacagagtgttatacccaacaacaaaaa---atacatgtttcTCAGTGACAcacagaactttctccaaaaaataccacatcttagGCCATAAAG-ATgcttaaata----caaaagaattgaaatattcCTTTGCATACTATCAGATCACAATGGAGTAAGACTACAAATTAACAGCCAAAGAAACTATGGAA-------------------------------------CAATG-----TGGATCAATGAAGAAGTCAGAGGAGGATTTCAGAAGTTTCCATCATC---TGACAAGGGAAACACAACTTGCCAAAGCCTACAGGAGCACAGTGGAAGCCACTGGAAGAGGGAAGCTCATAGCCATAAATGCACAGATTAAAAAAGTAGAGTGAGTCCAAGTAcataacctaatgatgcatcaCAGAGTCCTAGAAAAACAGAGCAACCCAAATCCA---AAAACTagtag-----aaaaaattataaatctcaggatagaaatgaatgaaattgagactaaaaaa---atacaaagggtcaatgaatcaatgagttggttctttgaaaggataaataagacTGATAAACCCTTAGTCAAACTTCAcccaaaaaggaggaaaggaaaggctcCTATTActgcaatta-aaatgaaaatagtagAATCACAACACCACC-AATGAAATCCAGAAGTTTATAAgaaacagaactagaaaaaagccATCCTTAA-AATTATATGGAACCT-----AAAGAGACCCAAAATACAAAAGCAATTCCAGATAACAAGAGtgaagcagga

a score=53423
s chr3            17384800 2795 + 160039680 TTATTGAAGAAAACTTCCCAAATCTAAAGAA------TGAGATGCATATGA-----ACATA-------CAAGAAGCC----TACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCC-----GACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAA----ACC------AAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAA--------GGATAATAACAGAAAAAAACCAATACAAGAACGCGAACAAC----GCCCTAGAAAAAACAAGAAGGTAATCCCTCAA-CAAACCTAAAAGAAGACAGCCACAAG---AACAGAATGCCACCTTTAACAACTAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAA----GTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACATACCACTTTCACCAA-TGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC-----ACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT-----GCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTC-----TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA-AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 105534203 2886 - 233722169 TTACAgaaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtcaactccaattagccatgattaaaataaacaaacaaaaagaaaaaaaaaaaaaacacctcacacTGAGGCATATAATA----GGATTCCAAAAATTCAGCATaggaaaagaacattaaaaactattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGAAAagcttggagagaagtatttcaagccctgaaagaacaTATCC--CCGGACAGGTTGATGTAATCTGcgaaactttccttcaaaattggtggagaaacaagatacttttgtgacaaagaacacctggttgaaattcatga---------ccaccaagccaacactCCAAAAACATTCTGAAGACTAATATAGAAAGA---GAACGAAGACTCCAATTTCATGAGCCCCAGTAGA--------GTTAATCCACcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGGGAAATTATATGACAGAAATAAGTTAACACACATCATTCATAATCACCAATGCcaatggactcaattcaccaatcaaaagaaacagattggcagaatagctcaagaaacaagatccagggttggagatgcagctcagtggcacagcgcctacctAGCAAgatcaaggtcatgagttccttgcccagtaccaaaaacaaaacaaaagagaaacaagatccaacaatatgggGCATACAAGAAATATGTTTAACTTGGAAAGATATACATTAAC----GGTCAAAGTgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatttgcagtcCAAGTGGATT--CAAGCCAAAACTGGTCA-----AGCCACAAAAAAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataagagtCATAAATATGTATTCCCCCAGGACCAGAACACCca-atacataaagcaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTTCAATGGGGGAATCTCAGTACCCTACTGACACAAAATGGGCAGATCAACTAGACGACAAATCAAAAAAAGA---ACTGAGTCAAACTT------TTGAACACATGGACTTAGTAGTTGGCTACAGAGTGTTCGGCCccaccacatcagaatacacattcttctccaaCCTTCAAGTCATGTTTTCCAAAATAACCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaaggaactgaaatcatcccatgcatattaGCAGACTCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAAAGTCC-TAcgaatatggaaattaaataacatccttctaaacaaccagtggatcacagataaaattaaagaacaaattagaaaatttctACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcccatataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccATACAGAGAATGAATGAGTTAAAGAGGTGGTTCTT--GGAAGATGAAGTAAAACTGACAACCGCTTAGCAAAcattataaaaagttttaaaaaggaaacaaagtcttagatccatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATTCTATATCATATG--AATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAGTGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgaccAATTAAATTCCCTGCTAAAGTCTAGGAAGC--TCAGAGAAGACCTACCTAATGCTGCCACTCCTCAAACTCT-------GGTGAAGTTGAAAGGTAATCAGTACTCCCTAAGTCATCcatggaagcaagcattac-ctgaTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAGTCTACCTAATGAGCATAGACAGAAAAATCTTCAACcagatactatcaaacagaatgcagcaaatcatcacaaAGACCACACACCATGACCAGgtaggattcatcctagggatgcagggaGGGCTCAagacatgcaaatcaataaaggtCACTCACCACATTAATAGAACCAAGGATAAAAACCACTCGATCATCTCAATAAGCACAGAAAAATCATCAGACAAATGCCAATACGCATTCAAGAGAAAAACTTTACAGAATATCCAACTAGATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTTCAactcaatatagttttggaaacattagccaatgCAAttagatggaaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatcaatgTTAGTAGCATAGCTGGGTacgaagtcaacactcaaatatcaatagcatgcCTATACAAAAGtaacaaactcagtgagagagaaattaaggaaac

a score=21414
s chr3            17384887 1562 + 160039680 AAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAG----TAACATATAAAGGCAAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT-----AATA----ACAGAAAAA-AACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAG-----AAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAAC-TAAAATAACAGGAAGCAACAATT----ACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAA-ACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATA----GACACTACCTCAGAATGAAAGGCTGG--AAAACAATTTTCCAAGCA-AATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATT---------GACTTCCAAACCAAAG-TCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAA-ACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGA
s HiC_scaffold_1 152824964 1480 - 233722169 AAATAATTACTTCACAATACATTTTActcaaaatcccagaagtccaaa---------GAGTCTTAAAAGATAttagataaaaa---caaaaccatcatttCTACAGCTACACTAAATAGGATTACAGcagatttttcaataaaaattttgtaGCCCAAGAAAAAGTGAAGTGTTTtaattc-----ctaaaagaaaacagcttccaatccagactaatatatcctgcaaaactatc---tttagttgatggaaaaataaggacATTCAAGGACAAAGAACAGCTTAAGAGATACATGAACACCAAAACAGCActcaaaaaaattcatgaatatcCTACACAGAgataacaaagacaaaaatctgaaca------taatgaatacaaacaaTCAAAGTGAGT----AGTAAATCAAAAAGGGGAAAAC----AGAGGag----------tcaacaaaagaaaataaaaggcaacTGTAAGTCAAAACTATCCAGTAACAACTCTCAATATAAATGGCTTCAACTCCCCAACTGAAAAACACAGAGTAGCAGACTGGATCAAAAGTACAAAATTCA--AGTCTGCTAACT-TAAGAgactcatctaatccaaaaagaaattggtagactgaaaaaaaatcaaaggatgggaaaaaaaATACTCTGTGCATCAAGATCCTCAAAAGCAAGCAAGGACAACAATTTTA--TtctaaggaaatttaaaaaaaaaactttcaagttaaaactgatcagaagaggtaaaGAAGATCACTAAAGATTACTTAAGAGAATAATTCAATAGGAAGAAgtaacaattgtaaatatttatACACCAAATATAGGTGCACTAACCTT-ATACAACAAACTGCACTGAACACATAAGATCCAACAAATACCAATATAATCATAGTAGATGATTTCAATAC-CAACTTTCACTAATAAACTAAACATTTAACAAAGAAATCAGA---------GCTGAAccacacctctg------aacaaatgaatttaaacagGTATC-ACAAAGCA-TCCACACtataac---agaatacacatttttttcaacaTCACAcaaaacattctctaaaatagaccacatactagctgaTAAACcctgcttaaataaatgcaaaagatgcAAAATCATCCCA------------------CATACACAAA--------Ttccaaaaggaaacaca------aaaattTTCAACCAGCTGGACACTAAATAACTCAATTTTGAATACTCAATGGGTCATGG------------AAGAAATTAAACCACTgcaaaaatcaaatgataacgCCAGCACAAAATACCAAAGCTTATGTGACA-----AAAGCAATGCTAAGACAGAATTTTACTGCCACAAATGCTTGCATTGGAAAAACAGAGTAAGCTCAAATGACCTACTGG----TGCCCCTGAAGCTACTACAACTACAGAAACAGTCCAGACCCAAACCAAGTACAAGGAAGAAATTCATAAAGATCAGGGGAAAAATTAACAACATTGAGACTACAAAA--TAACACAAGAATCAATGTATCAAAGaactatttctttgaaagaataaagtagGCAAA

a score=31184
s chr3            17384991 2170 + 160039680 AAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATA----CAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAGAAACCAAAGTATTC-CACGACAAAA-----CCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA---------ATAACAGAAA-AAAACCAATACA----AGAACGCGAACAACGCCCTAGAAAA--AACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAA--CATAAATGGTCTCAACTCGCCAATAAAAAGACA----TAGAC--------TAACAAACTGGCT-----------------------------------------------ACACAAACAAGACCC-----------------AACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATAT------------CTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATT--GTCCCATGTATCCT-----------------------------ATCAGA---------------------------------TCACCATGCACTAAGGC-----------TGATCT------TCAATAACAAAATAAATAACAGAAAGCCAA----------------------------------------------------------------------CATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCT------------------------------AATTAACAAAATCAGAAATGAAAAGGGA-GACATAACAACAGAT--CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCC--AGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAG-GTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA
s HiC_scaffold_1 183082675 2313 - 233722169 AAACCTATTGGGATTACAGCAGACTCT-CAACTCATACCTTAAAGGCCAGAAAAGCTTGGAAAGAAAGCTCAGAATCaagctttaaaagaaatcaatttcCAAACCAGGCTGCTATACCCTGCTAAActagctttcaaaactgatgtggata--aagatattttcatgataaagagcatctaaagaaattcatgatc-----accaaaccagcactctgaAAGATTCTCAGTGCTATGTTAGAAATGCAATAAATATACCATGCAGTGTGAACAGAA---TAGAAGACAAACAAAATGG-----ACTCAGCAAA-----AGGAAAATAGTCT------------------------------AATGATAAGAATAAATCAATacttttcagtaataactctcaaagTATAAATGATATCAAT--ACCAATCACAACATAGGTTTGGACCAGGGACTTAGCCCAGTGGCTCAAGCCTTGCCTGGtgaatgcaaggtcatgagtttgatccctggtacaaacaaacaaaaacagtttgACAAGACAGAGAAACAGTATACTGTGTATAAGAAACaacatttacaaagaaatttaTTCACTA----AAAATTGAAGGGTACAAAACAGTATTCCAAGTAACAAGAACCTGAAAACAAGCACAACTATCTTTCCTTCTTCTAGACAAAGAGAACTTCAAGCCAAGTCTCATCAGAACAGGCAAAG---GCCATTATGTATTGATTAAGGTAACAATTAAAGAGGAAGATAGCACAGTTACAAACATAAGCACCAACTTTTGTGCTCTCAATA---------------TCATAAAGGAAAGACTATCAGATatcaaagatcagataaacatcaatacAGTTACAGTGGGGAAgctcaataccccattgtcacagatAGATTGACTA----AACAAAAATTTAGCAAACAAATATCACAGTTGAATCAAACTGT-AAATAAATGGACCCAACAGATATCTACAAAATATTCAACCCAATAATAACATAACACACAATCTTCTCAGTAGAACATAGAACTTCCTCTAAAAG-----ATATATAAGCCAATAAAGCATGcttaagcaaatatttaaaaatagaaattccgaCCCATGCAtgttcaatgaaactgaaagccaATTGAAAAACaaccagaggggctggggattgagctcagcggcataagtgcctgccttgcaagcaggcagtcgtgagtttgatccctggtaccagtaaaaaaaaaaaaatgaaaaagacaaaaagaaagaaagaaagaaagaaagaataaaagaaagaaagaaagaaagaaaaacaaccagaGAAATTATGCAAgtacaaagaaattaaacaatatagaCTTGAATAGACAATGAGTCATAggggaaattaaggaagaaattagataGTTTCTAGACTTTAACAATAATGCTTATACAACACACCGAAACTTACAGGtcacaatgaaagcagtattaAGAAGGGCATTTATAGCTGCGAATCCCCATATCAGAAAAGCAGCGTGAACTCACA---------TAATGATGTAcctaaaatttctataaaaagag-----aaattcaagTCCAAAGCTTGT-----GTAAcaaactataaagatcagaggagaaattaataaaattgagaataGAAGAC-----------------------ATGAGCtttttcattgaaagaataaataagatagaCAAAATCTTAACCAGTCTtgccaaaaaa-ggaaagacaaaatctTAACCAGTTTtgccaaaaaaggaaagactcaaatcaatagaattagaaatgaaaaaagatgaaGTAACAGTAGACTACATAAAAAAATCCAGAGGATTATTGACAACTGCTTCAAAATTctgtactcaaaaaaaaaaatagagaatttaaaagaaatgaactgaTTTCTAGATGTGCATGAATTACCTAAACTGGAtcaacaaaacttaaaaaaattgaataatcCAAAACTTGACAACTGTATTGCAGTGATAATAAAAATTCTGCTAACCAAGAAAAGACCAGGACTCTAAAGATTCA-CACTGAATACTACAATGAATTC-AAGTAGATCTAACACCTACATTCTTCA-AATCCTTTAAAGAAAATGCAAGGGAAAGAGTATTCT--CAAAGTTACTTTTGGAAGCTAGAATTACCCCGATTCTAAAATCAGACATAAATTCaaccaaacaaagaaaacttCAGGCCAATTTctataatgaacatagatgcaaaattacTCAGTAAGTCAATAGCAAACAgagt---gaaacaaatgaaaaatag-atgCATCGTGAGAAAATGGGCTTTGTTCCAGGAATCCAAGGATAGTTTGACATACTCATATCAGTACATTTAATGTGTCACATAAA------TAAGGACAAAACTCAC-----------------------AAGAGCCTTTTACAAAATCTCACATCTA

a score=49405
s chr3           17385034 3473 + 160039680 AAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAACTGCAGCCCAGGCTACTATACCCAGCCAAACTCTCAATTATCATAGAGGGAG-AAACCAAAGTATTCCACGACAAAACCAAATTCACGCATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT-------AATAACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACAGCCACAAGAACA----GAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCT---TACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAG-TCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT-------TGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGAC-----AGATCATGGAAACAGAA--ACTAAACAGGGACACACTGAAACTAACAGA-----AGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGC--------CACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAAT-TAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT-CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTC----TGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT-TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGA-AAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgt-aaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattag--------------aaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaa--aaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaact-----------------tcacataaaaccagagacactgaaacttatag------aggaga--aagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttaccta-----tcctaaatcagataggggactaatatccaacatatataaag-----------------aactcaagaaggt
s HiC_scaffold_1 18788857 3248 - 233722169 AATTCAGGAGAACTTGTAGTAAAGTATTTTGatcactaaaagaaaagaaattataaccCTGACTAATATATCTA-CAAagttgtctttcaaaattgatttaaCAAATGGGAACTTTCAATCACAAAAAACAGCTTAGAAATTCATCACCATTGAATCTGactc--caaaaaattctcaaggatatccaACTAGAGCCAA----AGATGGCAGAAAGTCTAGTGGGTGGGGTAAATAGGTAAGCAGaagggggaaaagaaaggaaccggcaacagaaacataatgaatgcaa--tttcaaaac-agattgACACCTATCAGTAATAACTCTCC------------------AAATGGTGCAAACTCCCTAATCAAATGA----GATTGCTGTCCTGGCTA----AAAAAGATTAAGTCGTATGGTATCCTCTATACGAAAGACAATCCAAAAATAAACTCATGGACTAGAT----ATAAAAGTATGGAAAGCAATATTCTATGCAACTAAAGCCTAAAAATAAGCAGGAACGGTTATCCTATTTTCT--CAAAATTGTGCTTTAaactaaaactgatcagaagagggaaagaaaatcatGGCTTATTGGTTATGGG-----------------------AAATTCaacatatatatgttatatatat--------ttttatgtattatatatgttgtaatatatatatatatatatatatatatatatccctcactcacacata-------acttcataaaacaaa---cattactgGACCCGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAA-tattagttatttatttgttgaacaAGTGGAcctaatagatatctacagagtgtcc-ATTCAACAACAA-----CAcagattcttctcagcagaacacAAAACTTTCTCCATA---GACCATATATCAgcccataaagcatgctt-aata-attaaaaaatatc--agttaTCTC-TAGCTTATATCAAATTATAgtgcaataaaactagaaatcaa-gccaaaaaaaatcagagatattATTGAAATACAAGgatatgaaataata-tattct-AATAATCAGCAagccacagaagaaatcaagaaagaagtgATAAAACTCCTGCCGTCAAATGA---TAAAACTAGTATAGCACAACATATCCTA------TGGATACAGTGAAAACAACCCTAAGAGTAATACTTATATTTATGAATGTCCATGAAGGAAAAATAGAGCAGTCCCAAACAAATAACCCAATGAT----------GTCCCAGAAAAGCAAGAA--CAACTCA------------AagctactgtaagaaatgaaacTTAAAGGATGAGATTGG--AAGTTATGATatggagaatga---aaaaaatacaacaaattgaAGAGctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTtaccaaaa-----aaagttaaaattatagctattaaaatc----------------------cagaagatcattaataa--------------------ctactttgaaaacatgtTCTGTATTAAAATtgaagaa----gtcaaaagaaataccTTTCTAGATACATGTACATTGCCAAAACgaaaccaagaaaatataaaatctctGAATATTCCAATAGCAGGAAATAAAATTGCAGCAGTAAT-------------------AAAAACTTA---CCTGATAGATCCATTGTTGAATTTTACAAGAACTTCAAGATgaatttaatgccaatattcttCAAACTCTT-AACGAAACCAAAGTAGA--GTACTCT--CAAAATCATTTCTAGAAGCTAGCATCACTTACCGTGATTCTAAAACCATTGAAGGACCCGAGTAGGAAAGAAATCCATAGACCAATCTCTTTAACGAACATGAATGCAAAAACTTTCAACAAGATTCTGGA-AACAGAATGGGACAGATCATCAAAAAGAATGTTTACCGTAACCAAAATGGCATTAATTCTAGTGATATAAAGATGGGCcaacatttgcaaatcaataaatataataaactaCGGACGCAAAAGCTAGGGCAAAGATCATATGATCATCACAACAGATGCAGAGAAAAATCTTTGAGAAAGTCAaacacccattcataataaaaaccctg--aagatcta---------------atctcaatctgataagagcCATTTCTGTTAAACC---TGCCAATATCACACTAAAATGGGGGATGCTGAAAGAATTTCCTGTAAAATTggaaagaagacaaggatgtccatgatCACTGTTTCTATTCAGTGTAGTGCTCAAAACATGAGCTAGAACAATCAAGCAGGAGAAGAAGATAAAAAGGAGATGTGTGGGAAATAATGAAGTCAA---gttactatttgcagatgatttgatcctttata----------taaaaattcCACT--AAGATTCTTAGAGTTGTTAACCATGTTCAGCAATACAGTAGGACACAAAATTAACATACAATAATCAGTAGAATTCCTGTGCACCAATAACACACTcatagagaaggaa-------aaataataccattcacaatagc----actgAGAAAAA----------GTAATACTTACAAATTA--------ACCTATCTAAAGAAAACTAC-AGCTTctgaa-aaagagatt---gaaaataCCAGA------------CCTCTTTTTTCCTAAATAGGCAGAACCTATATTGTGAGAAATAATCATACTTTCAAAACTAATATATAAGTATCATGTAATCCTAATAAAAATGGGaccagcattcctcacagaactaggaaaaaaaaaaaaaaaaaaacaatcctaaaagtcatttggaactagaagagatcCAGCATAGCAAAGAAATCCTGGTCA---ACAGAAGCAAATCAAAAGTCATCACAACTCcaggtttcattttatattgcaaagctacagtgacaaaaacagcattCTGTTGGCACAAAG-CAGATATGCAGGTCAGTGGAATAGAAGAGAGCTTGCAGAAATGCCCCGAGGCACATTCAGCCATGTGATCTTTGACAGAGGGACcaaaaacctacactggagaaaagataacCACT--AACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGACTG------------TATCTCACcccatgaaataaaattaa----aagtggatTAAGTatctaatattaaaacagtatctaatattaaaacagaaa-acagaaacatgtagTCTATTGGGAGATGAATTTGGTAAAA--TTCAAAGATACAGGACTAGGTAAGGATTTTCTGAGCAGAACCCAAGTTGcaca-gaaataacatcaagaatcaacaaatgaggtTACATCACATT--AAAAGCTCTTCACAGTAAacaac-----cagcagagtgaagagtcaatctacagaatgggaaaaaaattttacccagctactcc----tcagacagagaacTATTGTTCACCGTATGTAATGGATTGTCAGCCACCATCAATTCAAGAAGGT

a score=38621
s chr3            17385206 2514 + 160039680 AATAACAGAAAAAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGAAGGTAATCCCTCAACAAACCTAAAAGAAGACA---GCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACA---GAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCA--TGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGA-AAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAA-CCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAA---CTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATA------CTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATG---AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTA-TACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAG-------ACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA----CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacaca--aagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaa
s HiC_scaffold_1 128249788 2230 - 233722169 aaaaaaagaaaaaaaaaaaagaaagaaagaaaggaatgc-----aTCAAAGAGGCAAGTATTTAtgcaaaaaa----agagcaaataaaggAGTCAAAAACAG----------TCAAAGAATACAATGGCAGGAA--AATCAATACATTTGACTAATAACTCTCAAAGCAAATGGCCTCAACTCT---ATGGAAAGACAAAGATTGCCACACTGGATCCAAAGACAAAATTCAGCATTTTGTTGCATTCAGGAAGCTTATCCAATTCCAAAATAAagtcatagactaaaaat-caagaaTGGATAACAATATTTTATGTAGCAGTGCCCcaaaaggaagcagaaacagCACTTTTATTGTGT----AggtaaattttaaagtaaaattgatcagaagaggcaaagaaggtcactacatattaatTAAGGGAACAGTTAAACAGGAAGAAGTAACAATTGTAAACACTCATGTACCAA----AGGGGTACCTAATTTCACAAAACAAGTACTACTgtacataaaaaatcaaataaataccaACATCATCATAGTGCATtacttaaatatttcagtttcacGAAGAGACAGttcaagtaaacaaacaaaaatccataaaGAAATACCAACTCCAAATCACCCCTTTAAACA---GGACTTATTAGAGATCTACAG--TGTTTTACATATTTACAACAGAATA-------------------CACAGAactttctccaaagtagaccacaGATTAATCCACAAAGCCTgcttaaataaacatataagcaTAAAAATCACCCTATCTATATACTATCTTATCATTGTGcagtaaaactagaaatcaatcacAAAATAAACCACAGAAAATGTGTGAATATATGAATAGTAAATATTACATTCCTGAACAGTCAGtgggccacagaagaaattaagagaagtTATTAAACAATTCTTACACTCACACAAGACTGTAG-TACAACACATCTGAGTCCTATAGGACAcaaagaaaacagtcctaaatGGAAAATTTTTTAGGTCCAtactcacatt--agaaaaacagaatgagctcaaataaataacctagtgaTTTGGTGATGAACCTCAAA----TAGtaaaaacagcaacagcaacaac-----------aacaaca-aaaatagttcAAATCA-GAATGCAGTGTAAGGAGGGAAAtcataaggaa-----caaagaa-----------------------------aaatttaacaaaattgagaa--------taaaaattgtaaaaaggaggcaagaaaagattat-ataaatgcaattaaaaattttcaaaa-------attacaaCAGACACCACCAAAATCCAGAA-----------ACTACTATGAAAAAATAGTACTCTAACAAATTGATGAATCATgaag-aatgaatatatttatagataCTTAAGAATTACCAAAACTCAactaaaatgacataaaaattctgAACCATCCAATAGTAAGCAATAAAATTTcagaagtaatttaaaaactgCCATCTAAGAAAAATCTAGGACCTGATGGATTATGGATTCACCAATGAATTCTGCAAAACCTTCAGGGAGATAGTAATACTCATACTCCTCAAACtgtttgatgaaattgaaagaaagggAATACTTCCAAATCCAGCCCTGGAAGTCAGGatcactctgattccaaaacaagaaaaggactcaaaacccaaaaaaaga------------aatctttttgatgaacatacacacaaagattctcaataagtTATTGGCAAATAGAATTGAA-AACTTGTCAAAAGAATcatgcatcatgaccaagtagctTTCATCCCAAagatgcaaggatgattcaat-------gACCC----------------CCATAAacacaagaaagaacaaaattcacATGAACATCTCAATAT-TGCagaag-----------------------ccatttatgacaaatatt-------------------------------------------------------------------------------------------------------tctttctagagtcagaaacaaaataaggatgtccattgtcaccactTTAATTCAATATGGTATTCAAAACATTAGCAAGAGTAATTAGgc----aagggaaataaaaaggacatgtataggaaaggaagaagtcaatataata-----tgcagatgacatgatcctttacatgGAAGACCC-AAAAATTCTGTGAAATGATTCCcaaa-ttaataactaaattcagtagcatattaGGATAGATAATCGACACAtgaaaatcaatagccttcctgaacacaccaataatgaactcactgagaaagaaataagcaaaacaaaactattcaCAATGA----AATCAAGAGAAATTACTTAGTAATTAACTAAATCAATGAACTGAAAAACCTCTATGATGAAAGTTATAGAATTCT---ATAAAAGATTAAagttgattccaaga

a score=51268
s chr3            17385211 2646 + 160039680 CAGAAA-AAAACCAATACAAGAACGCGAACAACGCCCTAGAAAAAACAAGA--AGGTAATCCC------TCAACAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAAC--AATTACTTTTCCTTAATATCTCTTAACATA----------AATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGC-TTACAGGAAACTCATCTCAGAGAA----AAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCA--AATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAA-TAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA-----TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAA--GCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTT-------TAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGC--TTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAAC--TATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC-TAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT-GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAA-AGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta--actcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagca
s HiC_scaffold_1 121915769 2545 - 233722169 CAGAAACAAAACTGGTTCAA-----CTAACAGCGCCTAGGAAATGAAAATCTCAAGTAACTTCAATAgataagcaacaacaaaaaatgtcaacaaaagaaagacaaaggatTCATCAATAAACAAA------GAAAGCAGTGTACTAGCTAATAATCAACACATCTTAGAATATATCTCGGTTAACAATCTAAATGctccaattaaaagaca--gatTGGAAGACTAGGT-CAAACACATAATTGAAAGGTctgctgcattaaaaaaaa---atgtcatgtaATCCAAAAGATACATATAgactaaaaatta---tttcaaaaactgTATTTCAAGAACTAAGACCATGAA--AGCAAGCAGTAGCAGCAATTATAATACCAGATATAATAAACTTCAAGCTAACACATGGTAGAAGAGACGAAGAAGGAAACTACATTCTAGTTAAGGG-aaaatccaagaagaagagatattGAT---AAATATAAACGCTCTAAATATGGGAATGCCTGTGTTTATTAAACAACAACTGCTGAAATTAAAActtcaaataaacactaacacagtGAGTATATGGGGATTTTAACTCCCAGCATTC-CAAAGagatataacaaataaacataaaataaa-----------------taacagagcTGAAACACTCGAACAGTTGGAATTAACAGTTATATACAGAGCATTCCTTCCCCCTATAGCAGAGTATGCATTTTTTTCAGCAACTCACGGTACTTTTGTCAAAGTAGATCACAGACTATTCCACCAAGcctaattaaataaatataaatgtactgCAGTTA-CCCATGTATTTCATTCGAACACTGTGCAAGaaagtaga-aatcaatgacagaagAAATGGTGGAAAAGGCAAAAGTT--CCTGGAAAAGTAATAATAtactcctaaacaaccagtggtTCACAGAAGAtatcaaaaaagaattt------ttttagaaatatggaagttaatgaaattgattgtacaagtaaacaaaacctTTGGGACACTATCATAGCTGTTCTGATTGGAAAGTT--TTGCAATTAAtactcacattagaaaaacagaggaaatcCAAGCAAACAcctttttttaagaaatcttaagATACTTGACAAATAACAAgctaa--------------------ggaaagaaattataaaagtaagaGTGGAAATTAA-TACTTTGAGACcaaaataacaatatgaaataagtCAGCAAagcaaagagctggttcttcaaaagactaaataaaatggACAAGCTCTTAGCAAAAcgtactaaaag----aaagaaaagattcacatAAATGCAATTAGAAACCACAAatatgaaatcacaacagatactACCAAAACCCAAAAGA----TAGAAACTATTTTGGAAAGTTATATTCtaacaaattagaaaattttaaagaaatggagagataGCAGAGCACATGCAAACTGCCAAAACT-AGCCAAGAAGATATGAATATACTTAACGATCCAAT-----CACAAGcaata-aaatattcagtaataaTCTACCAACT--AAAAAGCCTAGTACTTATTGGATTTACAACTGAATTCTAT--GAATTTCTAAGGATATTATATTATCAATACTCCTCAAggtattaaaagaaatttaa--agaatggAGTGCTCCCAAAGTAATTTATGGAAATCACTATATTCCTGATCCCAAAACTAGATAAAAATGTAGCGGGAGAAGGGAACTATTGACTAGTCtcttaaatgaacaaaaatgccCAAATTCTCAATAAcacattggaaaataaaatgtagtatatTATCAAAAGCCtaatataccatgatcaagtgtgTTCCATTCCAGAGATGTAAGAATGGTACAATAGATGTAAGCCTATAAATGTAATAGATcatattta-aaaagcaaggtaaaaaaccacatgatcatatcaatagatgtag-aaaggcttttgacaaaat-cATCACtacttcatgataaaaatccttgaataaaataagtatagGAAGATTATACCTGGATATGATAAAAGCTACCTATAACACGGCAATagccagtattatactaaatggggAAAACCTAAAAGCATTTCGcctaaaatcagaaagaagataAGGATGCTCAGTATCACTTTTTCTAGGCAACATAGTA-TTGAAATATTAGCCCAAACAGTCaaacaagagaaacaaatgaaagagatacaTATAGAAAga---gaactcaaattatcattgATTGTAGATGACATGATGCCCTATACAGAAGACCTAAGTAACTCCA-----------CTAAA----------AACTTCAGCAACATACCAAATCATAAGATCAGTACTCAAAAAA--TATTAGGATTTATGTATGCTACTAATTAAC-----------------------TCAATACAATTCACAGTAGATTCAATATAAATGAAATAGCTAGGATTTAACTTAACCAAAGCAGTGAAGGACCAATA-AAAGATAATTCCAATGCTCTGTAAAAGGAAATTGATAacaatatcagaaaatagaatgatATCTCCTGCTCCCTGCTAGATAAAACCAATATTTTCAAGACGatcatactctcaaaa-ctgttatcagattcaatgcagtcccaatcaaaattaCTACAACATACTTTACAGAACAGGGAAGAATA

a score=76153
s chr3            17385271 3523 + 160039680 TCAACAAACCTAAAAGAAGACAGCCACAAG-------AACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTAT------GAA----GAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTC--TGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTT-CAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATT----GACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCAT-AGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAA------------------------AGCCCAG---------------------------------------------------------------GACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGA---------AAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA---------------------------------------------------------------------------------------------------AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCC-----AGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGAT-AAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctcta---cacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttca---agt-ccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct-----caaggataa---aagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgg-gcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatcc---aacatatataaagaactcaagaagg-tggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaac--atccttaatcatcagggaaatgcaaatcaaaacaaccctgagatt----ccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaat
s HiC_scaffold_1 133185615 3530 - 233722169 tcaacaaaaacagcagaagaaaaacaaaggtcaGGCCAACAGA----------CAAAGAAGACAATGATAGTAAATAATGAACacatcacagtaatatatgtcaATGTTAATGGCCTCGATTCTCCAAAGAAAAGACACAGACTAAAAGATTAAATCAAAAAACAAG-TGCAACAATCTGTTGCATTTAATaaactcatctaatccaaaaagatattcatagactaaaaactaaatgatggaaaacaacattctttGCATTTGTTGTTTTCCTGAATCTGAAAACAAGCAGGAGTAGCATTTCTAATATCAGATATGGTAAACTTTAAGctaaaacagattagaagagacaaag---gtcactacatactagttaagggaacAATCTGACAGAAGGA----TAAAATTGACAAATACATATACACTGAATACTAAAGTGCCAATTTTCATGAAaactgctgaaattaaa---aaatcaaaca------ctaaCAGATTCACAGTGGGGGAATTATAACACTCCACTTTCACAAAGCGATGAACTa----aaca-aaactaataaagaaTTT--TAGAACTAAACCACACCTTTGAAGATACGGACTTAATGGATATAAACAGAATACTCCATCCCTCTATAACAGAATGTATGTTCTTTTCAGC---CTatggtagtttaaaaaaaaaaaaaagattacatgcTAAACCACAAAGCCTGCTTAAGTgaatataaaagaacaaaaattactgCATGCATGCTATCCAACCATTCtgcaatgaaaacagaaatcaatgacaagaaatttcagaaaagacaaaaaagaatctaGAAAATTAACAGTAtgctcctgaa------------caaccaatgggttatagaagaaattttaaaatttctggaagATAGTAACGATGACAGTACAATGCACCAAAACCTCTGAGACActatgaaagcagttctaagacaAAAATTTATCAACAATCAATGTTCACATTA-------GGAGCAAGCTCAAGTAGACCACCTTAAGAGAAATCTTAAGATActtgacaaaca--aaacaaaccagctCAAtt---------------------ccaaattaaggaaggaaattttacagatgaaa------------------------------------------------gtggaaatcaatgaaat--------------tcagactaa--aaaggactca-------------caccaatGCACttagaaa-----aagaggaaatcacAATAGATACTGTAGATACTGAGAGAATAGTTAATaagtactttgaaaaattatattccaacaaattagcaaattttgaagaaacagacagattcctagacatatACAAACTACCAAAATTAACCCAACAAGGTATAAATATGCTTAACAAcccaataacaagcaatgaaattgacaTAGTAATAAAGAATATGCCAACTAAAAAAGGTAGcaccaagggccagggatatagctcagtggcacagtgactgCCAGCAACCCTGAGATCATGatttcaattcctgatacaaaggGGGGGGGGACCTGACAGATTCACTACTGAATACTAAAAAACCTTTAAAGATGTTATATCATCAATACACCTCATGCTCtttaagaa-attgaaagggatgaAATGATCCCAAAATCATTTATGGAAGCG--TATCATTCTGATCACAAATTCATTTATGGGATCTCAAAACCCAACTAACAAAGAAAACTATAGGTCAACCTCCTTAATTAACATAtttgcaaaaatcttcaacaaggtattaacaaagagaatgcag---caCATTATCAAAACGATCATACATCGGACTAGGAATTAAGCTCAGTGgctaagcatctgcctggcaagagcaaggtaatgagttcaattcctggtaccaaaaaaaaaaaaaaccatacatcatgatcaagcaGGTTTCATCCCCTTGCAGAGATGCAAAGATGGCTCAACATACGTAAGTCAATAGATGCAATATATCACACACCCAGAAGCTACGTCAAAAACTTTATGCTCATATCAACAGATGTAGAAAAGGC-TTTCTCAAAATCCAACATCCCTTCA-------------GAGAAAAACAGATATTAAGGGCC-ATACCTCAATATGACAAAAAGCTACATATAACAAACCAATAGCCCACATCataataaatggagaaaaattaaaagtatttcccTTAAAACCAAGATTAAGATAAGAATGTCTACTATCACCTCTTCTATTCAACTCAGTACTTGAAGCATTAGctagaacaattaggcaagagaaagaaataagagagacaCATATAggaaaa---gaactcaaaatatcattatttgcaaatgatatgatgCTTTACACAGAAGACTTAAAGATTTCCACTAAAAAACTGTTAGA----ATAACAAACTTCAGCAACATAGTAAAATATAAGATCAA--TACACAAAT-ACTAGCATTTGTGTGCACCACACCAAATAACCAGGattagaagaaaattatgaaaataccaCTATTAACAGtagtttcaagaaaaataaaatatctacgaATTAATCTAATCAAGggagtgaaagatctatacaaagaaaactacgtacagtactttgaaaaaggagattgaagagaacatcagaaaatcaaaagatgTCCTCTGCTCCTGGACAGGCATAATCAGTACTGTCAAAATGACTA-CATccctaaactgttatacagaATTAATGCATTCCCAAGCAAAATGCCAACAGCATACTTTACAGACCCAGTAAAAATaatcctaaagttcatatggaaccagaagagacccagaaggcCAAAAAAAATTCTGGGCACAAGAACAAAGCAAGAA------GTAGAG----CATACCTGACTTCAagctacactacaaagcaacagtgattTAAACAGAATAGTaatggaacaaaaacagatacgTGGATCCACAGAACAGAACTGAGGATACAGAAACTTCTCCAAAGatattcaactatttgatctttgacaagggACTAAAAAGCAAATGGTGGAAGAAATACAGCTTATACAACAAGTAATGCTCGAGAAACTGGTTACCTGTGTGGAGAAGAGTGAAACTAGACCTTTATCTCTCACtacatactaaattaaaatcaaaatgaatcaaagatttaaatattaaaac--aaacatcaaacctactggaagacaaaaaagtaaaaa----tgaagacatatcatgtaggaaaggattttctaaatagAACCTCAACTGctccagaaataatagcaaaaatctataaatgagattatatcaaactaaaaag---ctatACAACAAAAGAATTAATCAATAGAacgaagagacaacctacagaatgggaagatgttgccagctactcc---tcaga----gaactaatatctagaagaatatataaagaactcaaaaaaattaaatcaccCAAAATTAAA-GTTCAAGTCgagaaatgggcaagagaaataaacagatactt------taGGGAA-------------AGAAATGTACGAAAAG----TCAACAAATAtatggtcactagagaaatgcaaatt-aaacaatgctaagattgatcccatcttactccagaaagactggcaatcattaagaaatca-ataataacaaatgttggtgaggctgtggcgaaaaaggaatcctcctacattgttgatgggaatgcaaactagtacaaccattatggagat

a score=6651
s chr3            17385274 1015 + 160039680 ACAAACCTAAAAGAAGACAGCCACAAGAAC---AGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAAC-----AAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGAT--AAGATTGACTTCCAAACCAAAGTCATCAAAAAA-GACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCA--CACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGA----TCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAA----GGCTGATCTTCAATAACAAAATAAATAACAGAAAGCC-----------------AACATTC------------ACATGGAAACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGAC-AACACATC
s HiC_scaffold_1 134164096 1124 - 233722169 ATAAATCTGTTAGAGAATATTCAAAACAACTAGAAGATAAAACAACTAGAAGATAAAACAACAGCAGTACATCCTTACCTATCAATAGTACCCCTGAATTTAAATGGATTAAATCCTCCAATTATAAGATACAGACT--------GgctgaataaatttaaaaagacccAACAAAATGTTACCTACAACATACTTGCCTcatcattacacacacacac--acacaaaatggtaG---------------TCCAAGCAAGCAGAA-ACCTAAGCAAGCAAGAGTAGCTATACTTATATTTGATCAAAGAT---------------GGTCACTAAATAATGACCAAGAGA------------TCAACAAATATAA-------------------TTGTCTGTAAATCTATATACACCTAATGTTGGAGTagtctattttataaaataaatgct-gtGATCCCCAAAG-AGATAGGGAGGTTCCATTATAGCAGCAGTGGGGAATTTTAAC----CACTTTCATCAATGGGCatat-accaaaacaaa---caaacaacaaccca--GAGTTAAACTATACTTATAAACCAAACTGACTGTTCTAAATTATTACAACAGAACATTTCA----AGAGCTGCAGAATATA---TATTATCAGCAG---ATAGAACTTA----------GACCATGTACTAGGATGCAAATGAGtcat-aacaaattttaaaaaac-aaaatcat-------agctTTTCCAATCACCATAGAATAAAATggaatcaacaacaacaacaacaaaaacttcagAAGCACTATAAATTTTTGAACAAAACATTGTGTGTGAGTGTGGTCTGGGAATTGAATCAAAAGCTTTTGTACTGAGCagttcattttcttcctcctattcttctccctctcctcatctcatttcatcattttatgacacagggtcttgctaagttgcccagcctaaggttaaatttgtgatcctcctgtgtctgcCTGCCAGACTACTGAGATTAGAAGTCTGCACCCTACATCCAAAACTCTCCTGAAAAAAAGCCTGATTACT-AAGGAAGTcagatggaaataaaaattgcttgaaaga--aatgaaaatggaaacacaata-aGCCAAAACTTGTAGATGCAACAAAAGCAGTACTAAGGGAGAAGTTTATAGCCATGAGTCCCTACATTAAAAACAGGAAGAGGATA-ATGCTGG--GTTCCACAAACACATC

a score=56369
s chr3            17385283 2596 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAA--TGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACA------CTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAA-AACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAA-CACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA--AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGA--AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTA----CCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTT-ATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAAC-------CGAATCCAAGAACACATTAAA----GCAATCA--TCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT----AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaata
s HiC_scaffold_1 154830298 2418 - 233722169 aaaaaagccA---ACAGAGAAAGAATGC----------------AATGACAGGAATGAATCAGTACCTTTCAGGAGTAACTCTCACTGTAAATGACCTAAACTCTCCAATTAGA-GACACAGATTGGAGAATGGATCAAACAATGAA--CCAAATGGTCTACTGTATTCAAGATcctcatctaatccaaaaggaaacacatagacTAAAAAAATTGAAGGATAAGAAACAATATTACATGAACCAGCCCCCCAAAATCAAGCAGTAGtagaagttttattttcaaagaaaataaattttaagctaAAACTAattagaaaaggcaaagaaagtcactacttATTAGTTAAAGGAACAATTTCACAGTAATAaataacaattattaatataCATGCACTGAATATTGGGGCAcctaacttcataaaacaaatactccTAGATATAGACCATCAAATAAATACCAATATAATCATAGTAGGTAACATCAAGACTCCACTTTCACAGAtacacagatcaactagacaaaacatTAACAAAGGAATATCAGTTCTGAATCACACC-------TTCGACAAATGGATGTAA--GATGTTTACAGTGTGTGTCACTCTAGTAAaaacagaatatgcattcttctcagtagcacatggaaccttctccaaaatagaccatctT-TAGTCTACAAAACCTGCTTAAATAAATACCAAAGAATCAAAATCACATCATATATAACATCAGATCATAGCACATTGAAACTGGATATCCATTGCAAGAAGAACTACGGAAATTTTACAAACACTTGGACGTTAAAAAAACACTCTTGAGCTCTCAGTG-------GGCCACAAaaggtatcaaaaaagaaag-aaacaatgagtAGACTCAAATGATAGTGTCAAAACAACATACCAGAACCAATGGGCCACAGTGAGAACAGTACTAAGAGGGACATTTCTAGATGTGAATGCTCACActaaaaaaacagagagagagatcaaataaataacctactgATGCACTGTAAGTAACTAGAAGAACAAGATCAGTTCAATCACTGCTTAAGA-------ACAGGAAATTCATAAAATCAGAGCCAAAAAtaatgtaattgaaactaaaagaga-ataaaaagaatcaatgagttgaagagctggttctttgaaaaa------aaatgagacaaaccCTTAGGCAAACTTaacaaaagaaagagggaaaagaaccatatcaatgcaattagaaatgaaaacat-gaaattaCAACAGATACTATGGAAAGCCGAAG-ATCATTAGTAACCACTATGAAAAATTGTAGACCAATAGATtggaaaatcttgaagaaatggatggatgcttagattcatatgaattactaaaactAAACCAAGGAAACATAAAACTTCTGAACAATCCAATATTAAGCAAAGACATTGAGGCAGTAATAAAGAGATCTACCAACTAAGAA-------------------TTGAATTGAAAGGC--------------AAGAATATCT--------------CCAATCTCATTT-----ATGGAAGCCAGTATTATTCTAATTCCAAAACCCA---GATAAAGACATAATTAC----AAAACTAAACTACACTA------AACTAAATAAAAGAACTAGTAGTCAATCTTTGTTAATGAACATGGACACataaatcctcaaaaagatactgGCTAACAATGgaacaaataataaaacagactatacatcatgatcaagtacaTCATGCCCAAGTAGGTTTAATCCTAgggatgcaaggatagttcaacatagaCAAATCAACAActgtaatacaccacataaagAGAAGCAAGGACAAGAACTACATGATCTTATCAGTAGATgaggaaaaagcttttgacaaaattcaaca-tcatttgtgatttaaaaaaactctgaagaaaatagatacagAAGAACCTaaactcaatctgataaaagccatttatgacaagccaacagctaatctcatattaaatggggaaaagctAAAATCA-------------CAAAGA----ACCAAGATATTCACTTTCACCATTCTTACTCAACATAGTAC-------ATTAGCGAGAACAAAAAGGcaacagaaagatagaaaaaggatacatataggaaaggaagaagtaaatttATTA---TTTGCA-ATAACATAATCTTACACATAGAAAAAcccaaaaa-tccaccaaaaggTTCCTAGAAGTAATAACC----------AAATATATGG--------------------------------------ACACCAACAATGAACCCACCAAGACAGAATTGAGGGAAATattaccattcacaatagcaccaaa-aaaattaaatactttgatATTAAtgtaaccaaggaaatgaaa-------accATAGGATTCttaag------------gagatcaaagaagacattagaaaattgAAAGTTATCCCCTGTTTCTGGATATGCAAAATCAACATAGCTAAAATAACCATACTCCCAAATG-GATATATAGAGTTTATGCAACCTCAATCAAAATACCTACATAATtcctcacagaaatagagaaaataatcctaaaatgtATATGGAATA

a score=10092
s chr3            17385298 422 + 160039680 AAGAACAGAATGCCACCTTTAACAACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAG-AGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACA--TTCACTAAAGAAACTTTAGTAAA
s HiC_scaffold_1 215396080 409 - 233722169 aagaataaaaaa--attttttaaacccTAAATGACAGGTTTTAGTACTTACCCTTTTATAATAGCAATGAATGTAAATAGTCTtaattctccaattaaaaaacaaaaactggtagTCTGGATAAA-AAACAATATGCAACTCTTTGCTGCTTTCAAGAAACATACCTCACCAGCAAAATGCATACAGAGACTGAAATTGACAAGATGGAAGACAAAATTTCT-TCAAATGAAACCTAAAATTAAGTAGGAGTAGCTATCCATGTATCTGACAAGGCAGATTACAAGACAAAATTAGTCAGACAAGACAAAAAAGGCTACTACATATTGGTAAAGAGAGCAATCA-CCAAGAAGgtataacaattaaaaatac-----------ataacacAGTAAACACAATTTCATGAAACAAACATTACTCAA

a score=6043
s chr3            17385318 660 + 160039680 AACAACTAAAA-----TAACAGGAAGCAACAATTACT----TTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA-----GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTA-ATATCTGATAAGATTGACTTCCAAACCAAAGTCATC----AAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACAC-ACTGAAACTAACAGAAGT---GATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCT-CAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATT
s HiC_scaffold_1 177518002 631 - 233722169 AACAACCAGAAAGTGACAAAAGGGAGTAGGAAATTCTAACATATCAATAGtcactttaaataatatttgaataaatttgtCAATCAAAAGACAT---CAAACAAACTAGATG---AAACAAGACTGTTATGTATGTTGCT-ATAAAAGACTCTCTTCACCTTTGAGGCACACGTA------AGCTAAAAATGAAAGGAC---------------------------tgacaaaaaaatcaagagtagCTTTCTTATGTACAAAATAAGA----CTTTAAGTGAAAAATTAACTCTAACGAGTGACAAAGAAGTA-ATTATATAATGAGAAAGGACTTACTTATCAACTGAAAACATTTGCATATG--TATACATGTTC--AGTGTTGAATAATCTgaatatataaatcaaatattaatAGATCTGGAGAGAGAAATAGACAGCAATGCAATAATAGTAGAAGACTTCAATATCCTGTATTTGACAATGGATAGATCATCCAGGCAGAAAATCAATAAGGTCACAACTGATGTGAAGAATACTGCAGATCAAACAGAGCTAGCAAAAAAATATACACCAAGCATTCCATCCAACAGCAACCAAATACAAATTCTTCTGAAGTACCTGCTGA-GCATTCTTCTATA-TAATCACAT--TAGGGCACTAAACGAGTCTTAGCAAATT

a score=16958
s chr3           17385321 1266 + 160039680 AACTAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTA----TGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAA----GACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAA-ACTAAACAGGGACACACTGAAACTAACAGAAGTGA---------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA-ATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGAT-----CCTTCTACAAAAGGCTATACTC
s HiC_scaffold_1 64285215 1148 - 233722169 aaacaatgtaaCAATAGGTATCAGTCAACACCTATGATTAT-TCTTAATGCAAATGATCATATCatcccaatcaaaagacacagactgacagATTGAGTCCTAAAACACAACCCAAC--------------------TTAATCTTAAAGAAAGATATA------ATctgaaaattaaaggatggaaaatgatacTGCATG-AAACAGCAGTCTTAAAGACAATGGGAGAA---------TTATTTTATACTTAGAT-------CAAGCGGAAAGCCACAAAAGATTACAATAAAGTAAGTTACAACATACTGGTAAAGAGAATAACTCAACAGACAGTTataacaattttatatatata--------------gtgcatctaattttgtaaaataaat--------------------------------------------------acttC-------CACTGTTACAAATACATAGGTTAATCAGGCAAAATGCtataaaag----------aaatatcagaggTAAACCACACCTTAGAACAAATGGCCTTACTATATAACTATGGTATATTTTACTGAACAGAAACAGAATCAACATATCTCTCAGCAACACATGGAACTTAATGCTAA-TAGACTCCAACTTAGATTACAAAGCATacgtaaataaatgcaaatgaatcaaaataatctcatgcatattatcatgtCATGGTATAGTGAAACTACATACCAATGGAAAATGAAACCACAGA--GGCTATGTAAACACAGAGATTATATAATACACTCTTAcataatcaataggtcacagaaaaattaagaaagaaagttaaaaagttCTCAGATTTAAATAATATTAGCAGTATAATGTACCAAAACCTCTATGACACAATAAAAGCAATCCTATCAGGGAAGCTTATAGCTGTAaatacacacattaaaaaaaaagagtgagctcaaataTATAACCTAATGATGCCCCAGAATGTCCTAGGAGAATAAGAGCTATGCAAATCCA---AATTGGTGccaa--gtagtaaattat-aaaatcagagcaaaatttaataaaattgagactaaGATAAc-atacaaagaaccaatgaacCATAGAGCTGGTTCTATAGTAGGATAATCAATATAATCAAACccttaattaaa-ttattaaaa---aaagaagcaaagactcAAACCAATGCAATTagtaatgaaaa---aaacaaaatcatgg----tGAAAAACCTCTGAAATCCAGTATATAAGTAACTACTATGAAAACATATATTC

a score=78962
s chr3            17385325 3530 + 160039680 AAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTA-AAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATT--AAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATT-CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC---------AAGAAGAACTATTCAAAGAATT--AACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC--------AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAG------AGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat-gatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct----caaggat--aaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaa--gccttgaagatatgggcacaggggaaaaa-ttcctgaacagaacagcaatggcttgt----gctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaac-tcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcag-aactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatg--------gctaagatcaa------------aaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctct
s HiC_scaffold_1 207798378 3418 - 233722169 aaaatgatagtaAATAATCAATGTATCTCAGTTATATCTTTCAACATGAACAGCTGTAACTCTCCAACTGAAAGACATGAAttggcagactggatcaaaaaacagaatccaacagGCTTCTGCATTCAATAAACTCATCC-----AAAAATATCTACatagactaaaaattaaaagatagaaaacaatattacatGCAACAAGACCCAGAAAACAAATAAAGGTGTCAATTTtaatatcagacacaataaacTTCTAGctaaaactgattagaagagacaaggt----cactacataattaGATAATGAATCAATCCAACAAGAGATAACATTAAT-----AAACATGTGCACCAAATACTGGAGcacttttcttcataaaatagaaactgctgaaattaaaagatca-actaaacatgaaaaaataataaaga---attttaacaTTCCACTTTCATAAAT------ACCAACTAAA--AAAACCTAATGAATAAACTTTAGAGCTGAACCACATTTTGAA-CATATGGATTTCATAGATATTTATAGAATATTCCACCCCTCTACAGCAGAGTATACATTCTTTTAAGTAGTAAATGGTATTTTTTCCAAAGTAGGTCACAAAGTATTCCACAAGCC-TGCTTAAGTAAATTTATAAGGATTGAAATAACTTCATGCACACTATTAGACTAATGTGCCATGAAAATAGAATTCAGTGACAGAAGAAATTCTGGAAAAGCCAAAGTCTCCTGGAAA--AATCAGCAACATacacaatca---atgggtcacagaagaaatca------aaatttaaaagaatttctagAAGTTAATGACAATGATGGTACAACTTACCAAGACCTCTGGCAGGCTGTGaaa----ttctaagaggaaaattcattaCATTCAAggctcacattaggaaaacagagaaagctcaAATAAGTAATGTTATAAAAAATCTTAAGACACCTGAGAAACAACAAACCACTTCCACCCAAAA--ATTAAATAg--ggaaat-------ttaaaagatgaaatcaatgaaattgagacttaaacaaaagtaaagacagttaaaaaaactccaacaaataaaagagttggttatttaaaagaataaataaaagtgataagccTTTATCCAAACtcaccaag----aaagagaaaagatttacaTCAATTTAattatgaaggaaa----taaaatcacaacagatactGCTAAAATTCGGAAGAGCATAA----CTACTTCAAAA-ATTATGTTCCAACAAGTTAGTAAAGTTTGAAGAAATGAGTGGATTCCTTGACACATACAAACTCCTAAAACTAACCAAGAAAGACATAAATATGCTTAGTGATCCAATAATAGACAATGAAGTTGTCACTGTTGTAAAGAATTTACCAACt--aaaaagcccaggacctgatggattcactactgaattctgcAAAACCTTTAAGGACGCTATATCACTAGTACTCTGTGAGCTcatcaaagaaactgaaagggatgGAGtactctttaattcatttatgGAAGCCAGTAATACCTTGATCCTCAAACTGGAtagagacccaactaaaaaaaaaaaaaaaacaactatagaccaatctccttaatgaacataggtgcaaaaaccCT---CAAGATACTAGCAAATAGGAGGCAGTGCATTATCAAAAAGATTATGTATCTTGATCAAGTTAGTTTCATCCTAGAGATGCAAGGAtgcttcaacatatgtaaattagtaaatgtaatacatcacattaacAGAGGC-AAGGttaaaatcaaatgatcatattaatagatgtagaaaaggcttttgacaaaAATTCAACAc-----catgataaaaactctgaagaaaagatGTATAAAAGGACCCTATCTAAATTTGATAAAAGT-ATGTATGACAGACCAATAGACAGAATCATaataaatgaggaaaacaaaaaactaaaggcATTCCTTCTATagtcaggaataagacaaagatgttctTCATCACtttttctattcaacatagtacttaaaacattaaccagagcaattaggcaagagaaaaacttaaaaaag-----tgtaggaaaggaagaactcaaattatcacTACTTGTAGATGACATAgatattctacacagaagacccaaaGAACTCTACAAAAGA---CTTAGAATTAATAAGTAAGTTCAGCAGTG----------------TAACACACACAAAGCATAAGCATTTGTGTATACCAATAATATATCTGATGAGAAGGAActtatgaaaacaatgctatttaCAGTAGCttcaagaaataacaaatacctatgaattaacataa------aaattaaagaccTCTAC----AAAGCTACAGTATTCTG-AgtaggagattgaagaggatattagaacaTGGAAAGGTGTTACCTATGCCTGGGtaagcagaaccaatattgtcaaaaagGCCAAACTCCCAAAACGGTTATGTGGATCCAATG---TCCCAATCATAATATCACCAGAATACTTTGCAGATCTAGCAATAATAATCCTACAATTTATATGGATCCAatagagacccagaatagcagaAGCAACTTTGGGACAAGAACAAAAAAGAGGCATAGGTA--------ACACCTGACTTCAAGCTATAATACAAAGCAACAGAGATAAAGATGACATAGTactagaacaaaaacaaata--tgtataaaCAGAAAAGAATTG-GGATACATATACTTCCCTAGACACATTCAATtatttgatatttgacaaagggaacAAAAGCATATGTTGG-----AGATAGTTTATTTGATAAAgtatgctggaaaaactggttatt----tgcagaagattgaaacaCAACGCTTATCCCTCataatatactaaattaaaataaaaatggatctaaacat------taaaacta---aCATTG--TctatttgaagataaaataggACAAAATGGGTTAAAGATGTAGGTGTAGGGAAAAGATTTTCCAAATAGAACCTTAATTgcagataaaaaatacaaaaacaaggcTCAAC-AGTGGAATTATATCATACTAAAAAG-CTCTGCTCAGCAACAGAATCAAtcagtagagtgaagagacaacctacagaatggagaaaaatttttgctaagcactcttcagaca--ggactaatatctagaatatacaaagaacaccCCAAAATTAAACCACCGAAAATTAAA-GACTCAGTGAAAAAATGGGGAAgagaaaatgaatagacacttcacagaagattaaatacaaatgttcaacaaatgtgt-aaaaaatgttcaatatgttCAGCTGTTAGAGAAAT-CAAAGTAAAGCAATGCTAAAATTCCATTTTACCCTGGAAAAAATGTCAGTAATTCTGAAATCAAACCAATGATTCTAAAATtgaacaacaaaaaatgctggtgTCATTGTGGTAAAAAAGGAACC-----------------------CAAACTAGTCCAACccttatggaaatcagtattgagttttcttaaagaactgaaattaaaaatttcatatgaCCCACTTATGCCCCT

a score=36593
s chr3            17385327 2262 + 160039680 AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATG-AAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGA-CACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAA--CCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTT-------CAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC---------------------------------TAAAGGGCACAG-GGACA---------------AAATCCTAATTAAC-------------------------------AAAATCAGAAATGAAAAGGGAG-------------------------------------------------------ACATAACAA--------------------------------------------------------------------CAGAT-----CCTGAAGAA-------------------------------------------------ATCCAAAACACCATCA----------GATCCTTCTACAAAAGGCTATACTCAACA---------------------------------------------------------------------AAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA---TCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGC-TGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccc--------------------taaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattag
s HiC_scaffold_1 225980954 2525 - 233722169 AATGGCAGGAATCACTAAATACCTGTCAGTAATAATgttcaatgtaaatggtcttaactTCCAAATCAAAAGTCATAAACTGGCAGATTGGCACAAAAGATGAAACCCAAATGTATTTTGTCTTCTGGagactttatttacaaaagaaagcatataaa----cagaaagtaaaagataGAGAACAATATTTCATCCATTTGAAACCATGAAGCAAGCAGAAGTATTGATTCTAATTTTgaataaagtgaatttcaagacaACATTGATCAGATGAGACAaaaaaagatcactacatactcat-aaataaaaaattcaatgaTAGGATGTAACAATTTGAAATGTGTATGCATCAA-TAATGGTACATTTGC-TTCATGGAACAAAAACTACTAGACATAAAAGGACAGATGGACACCCTCACAAACTTAGTGGGAGACTTCAGGACCCCACTTCCACATATAGATAGGTCAACAAGATAAAACTCCAATAAAAA---ATTCAGATTGAGCTACACCATTGAACAGATGGACTTAGCATATTTCTACAAAGTGGTGCATTCAACAGGagtagaaaacacatttttatcaGAAGCACAGGG-----------AAATT----------TAGGTTATTAaccatgcttaaataaatacaaaaagactgccataatgtctttcatt-tgttGGATCATAATGga-----actagaaatcaacagcaaaagaaaccaca-aaattaTACAAGCACCTGGAGATTAAATAGTATATTCTTGAATAGTCAGTGGGTCACACAAGGAAGcagggagaaaattaaaaatttcctcaAATC-AATGACAGTGAGAGAATGGCATATCAAAAAATCTATACAGCACAGTAAAG----TTCTAAGAGAAAAGTTTATTACTGTGAATGTCTAATTTTTACattggaaaaatagagaaatttccAATAAGTAACCTAGTGATACATCTCAAGGTCCTGGAAAACAAGAGT---AATTCAAATCCAAAACTTGTAGgcag-aaaaaattacaaagattGGAGAGGAAATCagtgaaattgagactaaaataaTAGTGTCAGTGAATCAC----------AGTTCATTctctgagagaataaacaaat--gatAAATCCTTAGTCAAACTtatgaacagaaggaaaaaattcaGTCCAATTAGAAATGAAAGTCACAGTGGACATTATTGAAACccaaagaattttaagaaactatttcaaaatttatattcctttttaaatttaagattaaaaatacacaggaaagaaaaaaagtagtacAGACAGATAAACAAATTAATTataataacagtataggtttacaaaacaagatgatagaaatttaacaatggttgtaataatgcatattgttaccttcaacaGGATTGCTTACATTAACAGATATAGActtgtaaaattgatctaaacttgagtgttaactgttttaaaatgaaatattgtttATGATCCAAGAgacccttattttttttttaatttttgtatcagagatcaaactcacaacctcatgcttaccaggcaagtgcttgagactgtgaactaaatccccagaccccaaaaTTTAATTCCAATAAACTAGAGAATCTAAAAGAAATGGGTAAATTCTTAAAtgcacatgaattaccaaaactgaaccaag-taGATATAAAATCCCAAACCAACCAATAGTAGGCAGTGAAATTAAGGCAGTAATGAAG-----TCCtactaagaaaagcccagaaaCTGATAGATTCACCACTGAATTATACTAGTACTTCAGGAAAGAGCTAACACCAGTGCTTCCTAAAGTCTTCGATAAAATAGAAAGGTATGGAACACTGTCAGGTTCATCCCTTGAAGCTGGCATTACTCTTattctaaaaccagaaaaagaaaatgaaagaaagaatgaa-----caagccaatatcattaatatatatagatgcaaaaatattcaT---GATACTTGCAAACAAAATACAAGTAATCACCAAAAGGATCATACATCGTGACAAAGTTACCTTCATTCCAGGGATTCAAGATTGGCTCAATATATGTATATCAAT-AATATAATACACAACATAAGTGAGGT--AAGGATAAAATCGC---ATAATCTCATTAGATGCAGAAata------------atccaacatccattcatgttAAAAAGCCTGATGAAAATAGGTA--------CAGAATATCACACTGGTAAAAGTCATTTGTATTAAGCCTATTAtcagtgtcatactaaatggagaaaaattgaa---ACTTTCATTGCAAT----ATCTGGTAAAAGCATGTCCATTATCATGACTCTTGTTCATTATAGTACTCAAAACTTTAAACATAACAGttagacaagagataaaaataaaagtgacatgAATAGGAAAACAAAGGGTCAAACTATtcttatttgcatatgacatgatccTTCACATAAAAGACCCTCTCCCccctaaacaaaaaataaaaacaccaaaag---aCTCATAGAGCTAATGAACAAATACAgcaaactgaaaaaatataaaatgaa--caaagaagcCAATAATGATTCTGTACAGTATCAATGAACCAATTGAAAAAGCAGTAAG

a score=9673
s chr3           17385332 1720 + 160039680 CAGGAAGCAACA--ATTACTTTTCCTTAATATCTC----------TTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTA--CCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAAT-----AATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCA-GCACCTCATGGTACCTTCTCCAAAATTGACC----------ACATAATAGGTCACAAAT--------------------------------CAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGT-------------ATCCTATC---------AGATCACCATGCACTA-----------------------------------------AGGCTGATCTTCAATAACAAAAT------------AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAA-AATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGC--------ATTT------------------------------------------------------------------------------------------------------------------------CTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA-----AGAAAAAACGG-----GAGAGAGCACATACTAGCAGCTT---------GACAACACATCTAAAAGCTCTAG--------------------------------------AAAAAAAGGAAGCAAATTCA--------------------CCCAAGAGGAGTAGA------------------------------CGGCAGGAAATAAT--------------CAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT--TCAAAG---AATTAACCAAACGAGGAGTTGGTTCTTTGA-GAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGG--ACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATC---CTGAAGAAATCCAAAACACCATCAGATCCTTCTACA-------AAAGGCTATAC------------------TCAACAAAACTGGAAAACCTGGAC-----GAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAA------ACAGTCCC---ATATCCC---------CTAAAGAAATAGAAGCAG---------------------------------TTATTAAT-----------AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAA-CTCATTTTA-TGAAGCCACTATTACTCTGATACCTAAA-CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCT-----CTTATGAACATCGATG-----------------------------CAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAA
s HiC_scaffold_1 23623698 2152 - 233722169 CAGAAAACAATACCATTACTTTTTCCT----TCTCAGTCATTACTTTAAGATTAATTAGATCAAACT--------AAAGGCAGAGATtagcaaaatgaattaaaatacacACTCCAACTATATGCTATCCataaaatattcactttttatctaaagatacaaaataaacttttaaagcaAAGGGTTGAAAAGGATATTCCATGCAAACAATAACCAGAAG--AGCCAGAGTGGCTCTGTTAAGTTCAGACAAAACAGGCttttagttaaattttttt------tacaagAAATAACATTACACGTTCTTAAAAG-----AATCTTCAAGAGACATAACCA------------TATGCACATAAGACATACGCACATACAatctcaaaataca---taaaaatgtt--gaccagaaagtgag----aaaaaattCTCCAATACCTAGAGGTTTTAATATATTAACTGCAATAATGGGTAAA-CACCGAAACAGAAGATCAACAGGGAAATA-TAAGATT--TTGATATTACTGATCGACTAGACTTAATAAGCATATATAGAACACTCCACGCAATAGCATAAA-ACATCCGTACTTCTCATGCACATCAG---ACATTTTCCATGATATACcgtaatacaaaataaaatcaataataaattccctgggtttggtggcacacacctgtaattccagcactcacaagactgaagca-----ggattgttacaagttcaaggctagctgaAGCTATTGAGTGattaagatcagcctgaactacataaatgagaccctctctcaaaaaacaaaaacaaaatttaagactGCGTGACAATAATGAAATGTGAAgtcaagaaaatgaagaaaaatctataaatatgtagaaattatgcaacacact---caaacatacaatg---aaagaaatcacaaagaaagCGTGT---GACTATTTAGAGATCAATATTTAGAGAAAacacaacataccaaaacttttagaagacagcaaaaggggctggggatttagctcagcggcataagcgcctgccttgaaagcaggcagtggtgaattcgatccctggtaccgataaaaaggaaaaagacaaaaaaaaaaaaaaaaaaaatagaagacagcaaaagtagcgCTCGGATGGAAATGTATAGCTATAAATGtctgcatttaaaaagaaaatgatctccaaggtggcacatgcctgtaatcccaccactgaGACAAGAggttcacaaattcaagtcctTCCAGCCTAACTTTtcaagatcttgtctccaaataaaaaaatagggcTGGTTCAGTGATGGTTTGATACCTGatactgaggggaaaaaaaactgtAACAGCCCACTTTACACCATCGAGTGATacaaaaagatgagaaaactaaatCCAAAGTTAGAAGTGAA-TAATAAAAAttgtagcaaaaataaataaaattaaagccaAATCAATGAAACTAAAGGTTGACTCcttgaagaaaaacaacaaaactaacAAACCTTTAGATAAAATGTCTAAGAAACAAAGAGGAACAAA---TGGAtgaataaaatcagaa--taaagtGGTGATATAGCTACTAACCTCACTAAATAAA---AACAGACTATAGGCAACTACTATATAGCCTAAAGAGTTACATGTGTGCCACACCAGGCATTCTAAAAAATTCACCATCACTGACCTAAGTAAATtgataaattcctaga--aacacagaTTACTTAAACAGACTTAAGAAGAAATT-ATAGTCTAACGTGTGGGAGGCCCTGTATATTCCTcaacactgcaaaagaaaaaaaattaaagatctcCACAGATCCATAACAATAAGGttgaattacaaatttaaaaaaaaaaacctccctaGAAAGAAAAGTCCAGGACCAGATGGCTTCACTGTTGAAATCtactaaacatttaaagaa---ttaacagTACTCCTGTCAAAACTCT---AataaacagaagaggaaaaaatgcttCCCAAACTCAATTCAGTGAGGCCAGAATTACCCTAATGCTAAAAACCAGATAAAGATAACACAAAAA-----AATTACAGAGCAATGTCCACATACTTGAAAAAAATGCTgaaccaaagtaaataaataaataaataaaataaaaatactgaacaaa----CAGCAAACAGAATCCAACAGCATATTTAAAGGACTATATATTTAGACTAAGTAGGTTTTATCCTAGGAATGCAAAGATAGCTCAA

a score=38672
s chr3            17385340 2507 + 160039680 AACAATTACTTTTCCTTAATATCTCTTAACATAAATGGTCTCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATC---------TACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGA-----------------TCAAG-------------------------------TTGACCTT-----CTAAACAG-----------------------------------------------------------------------------------------------------TCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAAT---AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC-AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA--TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCC-CACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaatt---------------------------------------------------------------------ggaaaagaggaag----------------------------------------------------------------------------------------------tcaaaa----------------------------------------------tatcactt-----------------------------------------------------------------------------------------------------------tttgcagatgatatgata--gtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctca-tggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaatt
s HiC_scaffold_1 107289698 2711 - 233722169 aataaatatctatcagttataaccatcaatgtgaatggtctcaattcaccaatcaaaagaaacaaattggcaaaatggatcaagaaacaagatccaacaagatgctgcatataagaaacatatttaattcaaaaataaattaatagactgaaagccaaaggatgaaaaacaatactcacTATGACTAGAACCTGGAAAAAAGTATGGTTAGCTAtcttatttgcagacaaagtggatttcaagccaagatttaTCAGAAGAGACAAATAATGTCCCTACGTACTTGTtaagagaacaatcc---aagaggaat-----------aatat--atgcaccaaatattggCACATCCAACTACATAAAAGTAACActaatatatatgaaatgttaGATAAGTAATAATGTAACTGTAATAAGGGACCTCAATACTTCACTGCCACAAAtgaacagatcaactagacaaaaa---aatcaagaaatatcagagctgaaccaaacctttgaacaagtGGGCTTAGTAAATATCAGCTATAACCATTGAGTTTTCTACCCCACatcaacagaatacacattcttctaagcagcACAT----------CCACAACAGATGACCTAATAGCTCAAGGAC---------------------ATAGTTAAGTAG----------------------------AATAAGTCTTAGACTTGTGAACAAATTATATTCTGGGAG---AACGTT----TGTAAGTTGAA--------TTCATTATTAAGTCT-GTTGAAGTGAGTATTACACAAA----------------------Ttgacacaaata----cacaatgtat------------------------------------------------------ATTGATTTC-------------------CGCTCCCTAGGAGC-------CACAGTCCACATCTCCAGTGC-------------TTTTCTCAAAAGTTGTCAA-GACagcaaatgataaagatcagagcagaaatcaagatgatcaagacaaaaaaaattaatcaaaga-----------------ttggttctttgaaagatt----aagtaaaataaactctTGGCCAACTTTACCAA----CACCAATA-AAGACTCAAATCTGTGCaattagaaatacaaatggtaa-atcaCAATAGATTCCGCAGAAttccagaagatcatcagtacttACTTTAGGAAACTGCACT--ACGA---TGGAAAacttagaagaaatggacatattcctagacacatataaaTTACCATAGCTGaactaagaagatataaaagttttGTCTaaggccataccaccctgaacgtgcCCCATCTCGTCTGAtcttggaagctaagcagggtcgggcctggttagtacttggatgggagattGCATGGGAATACCGAGTGCtgtaggcttaaaaaaaaaaaaaaaaaagaagatataaaagttttaaatattcaatATCCACCAATGAAATTGaattagtaatttttttaaaactaccaacaaagaataGTCCAGACCTTGacagatttactgctgaattctataagaaatttagaaaaggacTAATGGCACTCTTCATGAAGctttttcatgaaattgaaagggaagcaatactcccaaactcattcctggaagtaagcattagcctgataccaaaaccagag---gagccAACCAAAAAAAGACAACCACAGCTCaacctctttaatgaacatagattcaaaaatctTCACTATTACCTTGGCAAGTAGAATGCAGgaaattgtcaagaagattacacaccatggtCAAGTAGGATTTAAGCAAGGGAAGTAGGGATGGTTTAGCATACACAGATCACTAAATGTATTATACCACATTAACATAATTAAGCACAAAAACCACATGACTAtttcaatggatgcagaaaaagcatttgtcaAGGCCTAACacacattcatgatttaaaacccctaaagaaaatagcaattt--------tatctcaatctcataaaagtcatttataataaaccaatagccaacatcatgctaaatg--gtcaAACTGAAAGTTTTTCACTCTAAACTCAGGAGCAAGA-AAGAACACCCTCT---------CATATTCaatatagatctagaaaaatttGCCAGACTAGttagacaacagaaaaaaacaaaaggaatatgAACTGGCACACAGACTGAGGAAACTAGGAAGGAAGCTATGCCTCTGCCTGTAAGTCAGCCTGCATGCTGATTGGGGAGAGAAGAAGAACACCCCAACCCCTGTAaacaaccagctgattcagaggaactgcattatttgattgactttgcaaacctaaaaccagtagtctgagtgagtatttaaaagataaaaatatgcaatgtagTAACTATtatagatttcctactgtcttatcactttactgctttgttttatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcaaaaagaatatggataggaaagaaagaagttaaattattatttgctgatAACATAATCCTCTACATATAGGAGAtgccaaaa------------gactcctagaattaataatcaaattccatATCATAccaagatacaaagtcaactctcaaaaatctatagcattcctgtacataaatatcaaactcactaagagaaaaattagggaaatgacgtctttcacagtagcattaaaaaaaaagaaatatgtaggAATTCACCAAactaaggaaatgaaagacctttaaatggaaaactatagtactct---aaaaaagataaaaaaagacattaaaaaat-gaaacatatccTCTGTTCCTTGAataagcagaaccaatatagtgaaaataaccatattcccaaaattgttatacagatttaatgcaatcccaatcaaaatatcaacagcatacctcacagaatt

a score=84840
s chr3            17385380 3702 + 160039680 TCAACTCGCCAATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAA--CTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG----TATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTC-CAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCT-TCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC---ATCTAAAAGCTCTAGAAAA---AAAGGAAGC--------AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA---GTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaa--------cagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttact-------acagagcaattgtgataaaaactgcatggtactggtatagaga----cagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagag-gagaaagtg------------------gggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcaga-----aaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaag--------ccccaac-tggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtgg---tacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagca
s HiC_scaffold_1 112386594 3622 - 233722169 tcaattcaccaatcaaaagacacaggctggcagaatggatcaagaagcaagagtcaacaatatgctatatataaaaaaaacacatttaattcaaaaagaaattca-tagttaaatgtcaaaggatggaataaaacactccatgtgacaggaacctggaaaaaaaaaaacaggagaatcAACTCTATTTggagacaaagtgaatttcatggTGAGGGTGATTAagagggataaagaaggtcactacatccttgtaaagggaatattccaagaaaaagagatgataatcataaa-atatatgcactcaactacatga----------------aacaaatattaatggacatgaaaaatcaaaaaagcactAATATAATTGTACTGTGGGATctcaatacctcactgtcacaaaaagatcaatta--gaaa---aaaatcaacaatgaaataatagaattgaactaagcttttgaacaaatggatttagtaaatGCCTACAGAG-----TGCCCCcctacatcagaatatacatttttctcagttgaACACAGTATGGTTTACAGACTAAACCCCATACTAGTTCAGAGAAcatgattaaataaatgcaaaggaattaaaatt-----atgcaTGTGATCagaccatagtacaatgaaattgaaaaattagTGGCAAATGAGATCAGAACAACTTCAGAAGcagatggaaattaaataacaccttgcTAAACAACccataggtcacagatgaaattaaaaaggagattaGACAGTCTCTACAATTAAGTGAG--TGCTGATAAAACATACT----------AGACACAATGGAACCATCCCCAAGAAGGAAATTGATAGTCACGAATACCTATCTCAGAAAAATTGAGTGAACTCAAATAAGCAACTACTCAATGTTgaacttcaagcttctagaaaaggaagagcaggcCAAGTTcaaagctcatacaagaga------------gaaattatgaggATCAAAACAGAAactaatgcaatggagactaagaaaacaatgcaaacaatcaatgaattgaagagttggttgtttacaagattaaataaaattgacacacccgtagccaaccttatcagaaaaaggaaagacaagactCATATCCATGTAGTTGGAATAAAAAGGTCAAAAATCACAATGGACTCTTCataaattcagaagatcat--gtaTATCACATTGAAAGTTGTACTATAGTAAGATGGAAAgtgcagaagaaatggatataTTCCTAGATTtatgtgaattaccaaaactgaagcaagaagatataaaaatcctaaataagccaatatcaatcaatgaaatcaaagatgtgaTTAAAAGcctgccaacaaagaaaatcc--agccCTGGTTAAtttattgctgaattctacaggaaatttagagaaggtaTAACaccactactcctcaaactctttaatgaaattgaaagggaagcaatattcccaagtttgttcctggaaacaagcattactctgatattcaaaccagagaaagacccaaacaaaaaagagatctacaggccaatctctctaccAAATATAGATGGAAAAATTCTTAGTAAGATGCTAGCAAacataatacagaaaataatcaag---attatacaccatgagcaagtAGAATTCTTCCCAGTGATGCAAGAATGtatcaacatacacaaatcaataaatttaacatGCCATATTAATAGAACCAAGGTCAAAAAGCATATGCTCATCTCAATAGGTACGCAAAAAGTTTTTGACAAATTCCAGCA-CCACTTATGATAAAATCCTTACTGAAAAAATTA-GAATAgctggtctttatctcaatctgataaaagccatctata-caAATCAACACCCAATATCATTCTGACTAGATAAAACCAGAAAGCTTTCAATTTAAATTTAGGGACAAGACAAAGATGTGCACTGCAACCCCTCTTATCCAGTATAGTTCTAGAAACTTTACCCAGAGGAATTAGagccaagaaagaaataaaaggaataaggataagaaaggaagaagttaaatcggCATTATTCATGAGTGATCTGATGCTTTCCATAGCAGACCCTAAAGACTCTTAGATTTctccaaaagacttttagatttacTAACCAATTTCTTTGgcatggctggatacaaagtcaacaataaaaaatcaatagcctttctgTACATTAATAACAAACTCaccaaaagagaaattagggCAACAAAAGttctcacaatagcatccaaaaaagttaaatacataggaatcaaactaacaaaggaagtagaagacctctacattgaaaactacagtactctgaaaaaagagaacgAAGAGAGTATCAGGAAAGGGAAAGATATCC------CTTGGGTTGGAagaactaatatagtgaaaatgtccatact-----------tcCACAATTATCATGCGatttcaatcaaaattccaacagcatatctcatagaactagagaaaacaaccctaaagttcatttggagccagaaaaaacctagaatagcaatggtaattctgggaaacaaaggcaaaacagaGGGCACCACAATCCCAGAATTGAAATTATGCTCAAATTCACAGTGCTACC---ATAAAAAGAGcatgtaacagaaaaaaaaaaaatcagacctgagaatcagtgaaataggttggaagatggagaaacaaatccata-----------------------acaaaggggccaaacatgttctctggaagaa----aacctcttttaaaaatagtgatgcaaaaattggctttctacatgccaaggattaaaattaaatccata--------------------------tgaaatggatcaaagatctaaatatttagaCAGAAAAGATTAAATCTGTTGGGAGATACAATACACTATACTACACTACACTacaaaactcttgaaaacat-tatgcagccaaagattttatgaacaaaatcctgatcaCATGGGAActgttacaaagaatcaacaactgagatataattttattaaaaacgttttgcacagcaaaagaaaccaccagaagagtgaagagacaagtcacagtagggaaaaatattttt-ccagctcTTCCTAAGACAAAGAACtactctctaaaatatataaagaactaaaacaacAGAAACCGAAATTCCCAAgtgtaaagacccaatccaaaaatgagcacctaaaatgaatata-cattctcagatgaagaaatacacacagcaaataaatacataaaaaaat-ttcaatatcacttgttattcaagagatgcaacttaaaacaatgctaaaattccatctcatcccagaaagcatggttattattaagaaatca---acaaattaaTCATGGCAGGGATGTGGGGAAC-AGAAACTCTTTTCCAGTGTtagtgggggtgtagactggtgcaaccattgtggaagtcagtgtggataTTCTTCAAAAACTGGGACTGTTCATTTCCTTC-AACCCTACTATTTCTCTTCTTGGTACCTTcctgaaagaagtaaaagtacCACATCACAGCAATAGAtatacattc------atgtttatagtgacacagtttgtaatagc--agtcttggaaacagtccaaatgttCCTCAACTGGTGAGTGaata---aagatgtggttttttttttatgcaatggagtactattctgccagaAAGAAGGCTAAGTTCAAGAAATTTCTAGGCAAACAGGTGCACCTTGAgatca

a score=11992
s chr3           17385390 779 + 160039680 AATAAAAAGACATAGACTAACAAACTGGCTACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACAT---ACCACTTTCACCAATGGACAGATCATGGAAAC---------AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT-TTTTAGAGTTTAATGAAAATGAAG
s HiC_scaffold_1 66390200 718 - 233722169 aaaaaaaaaagacagac-aacagAGTGGATTAAAAAACAAGACTCAACTCTTT------TGCAAGAAATGTACCTCACTAGCAAAGA----------CTAAAAACGAATGGGCAAAGAACAATATTACATGCAAATGAAACCTGACTGCAATCAGGAGTA-CTAAACTCATATCTGACAAAGGAAGCTTCAAAACAACATTAGTCAGATAAG-CAA------ACACTATATACTGATAAATGGAACAGtcc--------------------ataaatatatgtgcaccaaacatTACTGCCCttgatttcataaaacaaatactactcAACAGAAAGAGACATAAAGGTCCCAATACTGTAATAGTGGTTGAGTTCAATATTAAGATGATCCTACCAATAGATAAGCCATCCagaccacccccccaaaaaatcaacaaagatacCTCAGAATTAAAGTACACCATAGACCAAACGGACTTAACAGGCGTATATGGAACATTCCATCTGACAATTGTGGAATACTTATTCTGCTCAGAAGTTCATGGACTGTTCTCCAAAATAGGTAATAGCTTAGATGATAAAGCAAGCCTCAGCAAATACAAACA---GGAAAGAATTTCTTATACATTATCAGcttataatggaatgaaactagaaatccaGGGCAAAG-AAATCATAGAAA--CTACAT--------AAAcagaataa--------tcagtg-------ggtcactgaAGAAATGAGGTAGAGGCTAAAAGAATAATTCacaaggtaaaaaaaataaag

a score=16880
s chr3           17385410 1034 + 160039680 CAAACTGGCTACACAAACA--AGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCA------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGG-GAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGC--AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT------TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG
s HiC_scaffold_1 29924627  969 - 233722169 CAGAATGGATTCAAAAGTATGAAATTCAACTATATTTTACCTATTGGAGACATACCTCATCCAAAATAAGAAGGATGGAAA-----TGAAAATTagaggatgaaaaacagtattt-----gaCTAGAGCCCGAAAACAAGCAG--------ACCTCAA-----GACACAGatgacttcaagccaaaactgatcagaagagacaaaaacgAGCACTTCAGATT--GtgaagaaacaattcaacaggaagagatagcA--TTAGAATGCTTATGATTGTTGCACATCagc-------tttataaaacaaaaact--cagatTTAAAAGGACAGATAGC-CACAACACAGTCATAGTAGTGGAACCTTGGTGCCCATCTTTTTCAATTAGATAGGTCAGCCAGACCAAAAAATCAACCAAGAAACATCAGAGTTAAAccacacctttgaacaaatggacttaata---ctCTAT-GCACGTTTCATCCAACAATAAtagaacacacatttttctcagcagaacatgaaactttttccaaaatagagcATATCTTAGGCCATAaagcatgtttaaataaatgtagaagAACTAAAACAATCCCTTGCATACTATCAG-TTAAGAAGTAGAAAG--tagaaatcaacagcagaaaaagcCACAGAAACTATACAAACACCTGGAgattaaatattacattattgaataatcagtggatcatagaagaaattaggaaagtaat-aaaaaattcgTAGAATCAAATGACAGTGGACAGAAAACATACCAAAACTCATGGGACACAATGAAGGCAGTTCTAAGAGAGAAGTTTATAGCTGTAAAAGCATATGTTAAAAAAAgagtgattctaaatac------cctaatGATAC-------AGCTCAAGAACAATGAAAAGCTgaaactaacagaaaaaaattaga---------------aagagcagagaaaacatcaatgaaattgagactaaaagtAATATAGATGCTCagtgaatca----------gagttggttctttgaaaggctGGAAAAG

a score=53251
s chr3            17385420 2175 + 160039680 ACACAAACAAGACCCAACATTTTGCTGCTTACAGGAAACTCATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACT-TCAACATACCACTTTCACCAA-TGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG----AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGC-----ACAGGGACAAAATCCTA-ATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTT----CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTC-----TACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAA-AATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 105839773 2141 - 233722169 acagaaacaagatccaacaatatgctgcatacaagaaatacgTTTAACTTGGAAAGATATTCATACATTAAAAGTCAAATGgtggaaaacaatgctccatgggACAGcaacctggaaaaaagcagggccagctattctatttgcagtcCAAGTGGA-TTCAAGTCAAAACTGGTCAAGCCA--CAAAGAAGGTCACCCTGTACTTggaaagggaacaatccaagaggaagagataacaatcataaatatgtatgcccCCAGGTCCAGAACAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTGCTGCCACAAAATgggcagatcaactagaca---acaaatcagaaaaa-----gaacTGAGTCAAACTTTTGAACACACGGACTTAGTAGTTGTCTACAGAGTGTTCGGCCccaccacatcagaatacacattcttctccaaCCTTCAAGTCATGTTTTCCAAAATAACCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaaggaactgaaatcatcccatgcatattaGCAGACCCTAATGCAATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAAAGTCC-TATGAATatggaaatcaaataaaatccttctgaacaaccaatggatcacagataaaattaaagaacaaattagaaaGTTTCTACAACTAAACAATAATTCCAATACAAAATACCA------------------GAAAGCAGTCCAATGAGGGAAATTTAgagcagtgaattcccatataACAAATGCAGAGTGAACTCCAATCAACACCTTAATGTTGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagtttgTACTAGAGGGGAAGGGATAA---AGAGcacagtagaaattaatgcagtggagactaagaaaaccatacagagaatgaatgaattaaagagGTAGTTCttgga-agatgaaataaaactgACAACCTCTTAGCCAAcattataaaaagttttaaaaaggaaacaaagtcttagatccatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattctaacaagatggcAAACACAGAagtaatggacagattcctacagTCATATGAATTGCCACAGaggaatcaagaagatgtaaaaattctaaatgacccaatgtcagtcaatgaaattgaagatatgaTTGAAAATCCACCaataaagaaaagtccaggtcctgaccAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGACCTACCTAATGCTGCCACTCCTCAAACTCT-------AGTGAAGTTGAAAGGTAATCAGTACTCCCTaagtcatccctggaagcaagcattac-ctgataccaaaactggagaaggagCCAATCAAAAACAGAGAACTGGAAGCCAGTCTACCTAATGAGCATATACACAAAAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACcaggtaggattcatcccagggatgcagggagggCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAATCAAGGATAAAAACCACTTGATCGCCTCAATAAGCCCAGAAAAGTAGTCAGACAAACGCCAACACCCATTCAAGAGAAAAACTTTACAGAATACCCAACTAGATTGTCTTTAACCCAACCtgaaaaaagccatctatgacaaaccaacaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACCAGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaaa-aagaaaaagaaaa---------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGACatctagaattaataatcaatttTAGTAGCATAGCTGGGTATGATgtcaacactcaaatatcaatagcatgcCTGTACAAAAGtaacaaactcagtgagagagaaattaaggaaac

a score=53134
s chr3           17385424 3439 + 160039680 [encoded data, 4367 characters]
s HiC_scaffold_1  6285540 4126 - 233722169 [encoded data, 4367 characters]

a score=51637
s chr3            17385472 3319 + 160039680 AAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAAC--------------CAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACT-TTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTG--ATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATT----CACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCC-------TTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGT-TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAAT--AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACA-AGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAAT-TTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA----------------------------------------------ACCACAC------------------GATC----------------------------------------------------------------------------------------------------------ATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTC-ATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaa-attaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacc-cttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaa--cttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacc---tctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatgg---tactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacagggga-aaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatgg--ggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctc-cattgttggtgggattgcaggcttgtacaaccactctgga
s HiC_scaffold_1 202321554 3159 - 233722169 aaagacatACA--GACTGAAATGGAAAGTAttggaaattatatttcaaaCAAATGG----AAATCTAAAGCAGAAGTA----TACCTATATCTTATGAAGCAGACTTTAAGACAAAAACTATTAAGACAAAGTCATATATAAAGATCAAG-GGATCAGTTCA--------ACAGGTAGAT-------AGATGA--------TTGTAAATCTAGATGCATCTTATGTTGGAG-AACCTAATTTA-TAAGCAAACACTGCTAGatctaaagggaaaaatagattcTAATATAATAATAGCAGAGGACTTCAACATCCTACTCTTGATCAGTGGGCAGATCATTCTGACAAAAA-------GGGcaataaaacagttaaaaaaatttttatagattaaaTGAATTTAACAGATACTTGCAGAACATTTCATCCAACAGCTGAACAATATACGTTCTTTTCATCAGTGCACTGAACTTTCTCT-AGATAG---ACATACT-GTCCATAAAACAGGgcttgacaaaataaaaaa-attgaaataatatccTGTATCTTTTCTAATCACAATG---GAAG--------TCAATAACCAAAGA------AGATTGTACAAATTATGATACATGAACACTGAATAAATTTTGAACAAACAATA-------CAACAATGAAatcaaatgtgaaatttaaaaatatgtcaa----aatgaagatgaaaacaCAATATGCCCAAACTTATGgaatacaataaaaacaatactagTAGGGAAGTGTTTGGCAGTAAGtgcctatattttttaaaaataaat-------------ttcaaatgaacCAGTAATGTATCTCAAGGATTTTGAAGGCAAGAAg--aaagtca---aaagagaaaaaaagaaagactagaacaaaaataaatagggactttaa--------aagtataaattactAATGAAACAGTTG--------------TGGTTTGTTTGAAATATAAACA------ACCAACTTTTAACTGAACTAATCGGAAAA-AAAGAGGTAAgatccaaataaataaaaccacagtTGAAAAGGGAGAGATTAAGACAAATcctacagaaatacaaagaattactAGGGATTTTTATTGAA----------AACCAAATTGGAAAAgctaatagaaatagaaaattttctggACATGTGAAACCTACCAAAAATGAAAGATGAGGACGTACAAAATCTTGAACCAGCCAATAACAAGTAATGAAATGGAATCAGTAACAAAGTAAGACTTATAGC----AAAAACTCAGACCTAAATGGCTTCACTAATGAATTTTACCAAACTTTTAAAGAA---CTAATGCCAGTTCCCCTCAAAAATTTCCAGACACACTAAAATGGAGGGAACCCTTccaaactcattcttggaggccaAGATTACCCTGtta--------aaaaacagagcaaacaaag--agaaaactgtACTCCAGTATTGCCTGGtaaacacagaggcaaaaattctCCAAATA-------CCAATCAAATTTCATAGCACATTAAAAATACCATTCACCATGATCAAGTTtgtttcatcccaggaatgcaagaatggcTTAATGTATAGAAATCAGTAATCATAATACATGGCATCAACAGAATGAGTGGTAAAAGATCATGATAccttagccaggcgtggtggctcatgcctgtaatcccaccactcaggaggctgaggtgggaggatcgttatGAGttagagaccaacctgggctacaaggtgagctcaaggccagtctgaactgcatagcgagaccccatctcaaaaaagaaaaaatttttaaaaattatggtacCTCTATTGACACAGAGAAAACACCTGATGAACTTCAACATTCCCTCAATGATAAAAGCTCCAAACAAATTGGGCATACAGGGACTGTACTTCAGCATACTAAAGAACATGTGTGACTCAC----AGACAACATCATACTGAGTGGGAGAAAGCTGGAAGCATTTCCTCTAAGatcaagacaaagacaaaa-tatcTAAGCTCACtgttcttattcaatatagtactagcacttttagccagagcaattatgtgaaggaaagaaataaaagacataaatatt--atgGGAGGAAG------TACAACAGTTTGTAGATGATTC-----TACATATAGAAAAACCTATAGA--CCAACAG---CCTATTAGAGCTGATA-----------TTTAGTACCAAGACACAAatatcaacatataaaaatcattagttt--------atacagattaaattttctg----agaaatcagGAAAGCAATTCTACATTAAAATagctataaaagaataaaaatacttagaaa------taagcAGGGAAGTTTAATCCCtctataattaaaagtttttaaaatactgatgaaata--------aaaacacaaaaagatggAAGGACCTTCCAAGTTTAtgaccagaaaaaa--aatgttgttttaaatGTCCATATTACCCAATATGATCtatacatttaatgcaatcccagtcaaaatgcTAATGAAATGcttcatagaactagaaaaaac--------aattcatgtGGAAGCTCAAAATACCCAGAATACAAAAATCT----TGAAGTGCAAAAGGGACAAAGCTGGAGGTAtcacaataccagatttcaaaaCATACAACAGAGCCATGGTGAC-CAAACCAAACGGTTTTaatggcataaaaacagacatataaa-CAATGGAAGAGGATAGAGAACTCTGCAATCAAACCACACAACTACAATCAACTGATTCTTGACCAACACACTAAAAATTTACTGGGAACAAAAGACAGCAAT--------------------------------------------------------------------------TACTAAAAGAAAACCTAG------------------------------------GAAACATTTGAAGGAAACA------------CTTTAAGATGTTGGTACAAGCAATAAAGTTCTGGGACAGGACC-CAACAGCACAGGAAGTGAAATCAAACATTTACCTTTCTCa-ttacacaaatttaaaaacttctgaaTAGCAAAGGAAACGAAC--AGAATCAAAAaaataacctacagaatgggaggaAACAGTTGCCAATTGTTCACCTCA----Gggttaatattcaga--atataatGAACTTAAAAACTT-----TTTGACAGTCAAGCAGCCCAGTTAAAAACAGGCAAGTT---GTTTGAATAgatatttcacaaaagaaaaata-caagtggccaacaagtatatgaaaaaatgctaaaTATAATTAACCATCAGAGAAATGTAAACCAAATATAC---AAGATACTGTCTTACCCCAGttagaatgactattatcaaaaa-taaaaaaatagtgacTCTtgatgaggatgtggagaaaaatgaATTCTTGGCACATTGCTGATGTGAATGTATATTAGTACAATTATCATGGA

a score=28851
s chr3            17385494 1582 + 160039680 TGAAAGGCTGGAAAACAA-----TTTTCCAAGCAAATGGTATGAAGAAACAAGCAG---GAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTC--ACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTC--------ACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATA--AATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAG-ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG---AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACAT--AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG-ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCA----GCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTA--TGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAAT
s HiC_scaffold_1 181954364 1522 - 233722169 TAAAgggctggaaaaagaaaagatacactaCACAAGTGGAAACTAAAAGCCAGCAGCAGGAAGAGCTAACCTCATAGCAGGTAAGGCAGACTTc--aagtaaaacatttaaatgagACA--GAGGGTTACCGTAGACTGATAACATTATCAATGCACCAAGAAGATAGAACAATTTT----ATATATGTGCCAACCACAGGGCCACCCAAATATG-TAAGCAAATATGAG---AtctaaaaagagacagagagaccccAAAACAGTAATTGTTGAGGACTCCAGTGC-CCACTTCCTGTAATGAACAGAtcatccagacagaaaatcaacaaagaaacatctGTGTTGAATCACACTGTAGAATAAATGGACCTAACAGACATCTGCAGAACATTTTATCCAACAGCAGCAGAGTATACATTCTCATCAGCA---CGTGGAACATTCTAAAAGATAGATCATA-AATAGAACTTTAATAAAAACACCAAGTCTCAATAAACGTGAAAAAACTGAAGTGCTATCATGTAACTTGTTAGATCA-CATGGA--AA----------CAACTACAAATTCCTAGTAATTGAAAGTACGAATAcgtatggaaattgaataaca-tgtTCTATATGACCTATGgataatttaagaaattaa-----aaattgaagaaatctctggaaagaaatgaaaatgtcagCATAACGTATCAAAACCTGTAGAACACAGCTAAAGCTGTACTGAGAGGAAAATTGGAAGCAGTAAAATCATTCATTATGAAA---AAAAGGTCTTAAATAAACAACCTTACAGAGCACCTGAAGGATTTAGAAAAGTACAAACCAGAAGTA--CAAAAGGATTAATAGAGGGAAGGTAATAATGAAGATCAAGGCAGAGATATAtgaaatcaaaactaaaaacaatg---aaaagatcaGTGGTACAGAGTTGTTGGT------AAAGGATGagcaaaatagataaata--tagcTAGACT-GCTagccaagttaaaaaaaagatacaagt----aaAACCAGATATAAAAAGGGAGACTCTAAATGATGGTTAGCACAGAAG---ACAAAGTCATAAGAACCTACTATAAAAAATTATGTGCTTAAATACTGGATAACCTGGCAGAACTGGCTAAATTCCTCAGTACATGCAACCTGTCAAAACtcaattaaataacaa----aaaatgtaaacaaatgaaCAGTCTGTAATGAGAT---------------TAGTccctcacattaaaaaaaaaagtttagaaactGCTGGTATTATTGCtaaattctaaaatatgttt----AAGAATTAATCCAAGTTCTTCTAAAACCcttctaaataaatgaaatggaagGAATTCTGCCAACTTCTTTTTATGAGGCCAACATTGTCCTTCcaccaaaaccaaacaatgatAAGACAA----GGAGGACTGTGGGGCTATATCTCCCCGTGGGCCACAGAGGCAGAAATTATCAACAAAAT----ACTAACAAACTCCAATAGCTCAT---GGAAAACATACATCATAATGAAGTGCAATTCATCCCAGAGAGACATGGAtggtttaaaatatgcaaatcaataaatgtaat

a score=16040
s chr3            17385535 918 + 160039680 AAACAAGCAGGAGTAG-CCATCCTAATAT-CTGATAAGATTGACTTCCAAACCAAAGTCATCAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACT--TTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGA----------TGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACAT-------------AATAGGTCACAAATCAGGC---CTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA
s HiC_scaffold_1 167009644 906 - 233722169 AAACAAGCAAGAGTAGGCTATCTTGTTTTTCAGATACAGCAAACTTTAAGCcagaactgatcagaagagatcAAGATGGCCATTACCTACTGGTAAAGGGAACAACTCAACAGGAAGacttaacaattttaaatatctatgcatTGAATGCTGGTACACCTAATTGCATAACACAAAAACTACTGGACTTAAAAAGACAGATGG------ACACAATACAAG-----GACTTCAGTGAGATACTAGCTCACAATGATATAGGTCACCTAAGcaaaaagtcaagaagagtcaa--gaaagaaatattagtCAAACTATACCACTGAACAAACTGGTTTAACAGATATCTACAG--TGTTTCATCAAATgacaacaaaataca--tttttctcaatAGTTCATGGAAAATTTCTCATAATAAACCATGTTTTGGCCATGGTTAATAGACCATGTTTTAGGTATgctcta-aaatacaaaaa-attgaaacaatccCCTGCATACTATTAGATCATAAC-----AAAGCTAGAAATCAACATCCTAATAAGCCACAGAAACTACACAAACATAGATAGACTAAATGATATGTTATTGGATAATCAGTggatcagagaagaaataagcTAATAAA----AAAGTTCCTGGAATCAAATGACAATGGAATAACAATACACCCAAGTCTATGAAACACAATGAGAGCAGTTCTAAGAGTGAGGGTATTGACTATACCTGCACACATATAAAGAATAGAATGattccaaataaataacttaGTGATGTACCTCAAGTTCCAAGAAagacaagaacaatccaaatctaaaattaataga----aagaaattataaagatcagagtggaaattaa-----tgagattaggaaaaa-----aaaagaatcaatgaatcccagatttggttctttgaaaggatggGGAAGGGGTATAAA

a score=32114
s chr3            17385540 2964 + 160039680 AGCAGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCCAAACCAAAGTCAT----CAAAAAAGACAAGGAGGGACACTTCATTCTCATCAAAGG-------TAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAGAAACTTTAGT-----AAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAA-------CAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAG-TGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC----CCTTAGCTAGACT-----CACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAG---------AAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA--CCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCG---CTAACCGAATCCAAGAACACATTAAAGC---AATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAAT--TCAAGGCCAAT---ACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatg-atagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaa--gtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag-------ccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagat-ctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgcc--aaaagcaatctacagattcaatgcaatccccattaaaat-tccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaact-gcatggtactggtatagagaca--gacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccag-----tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagc-cttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacact----------gtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatcc-aacatatataaagaactcaagaa
s HiC_scaffold_1 175426033 2584 - 233722169 AGCAGGAGTGGCTATACTGATAACTACCAAA---------TAGGCAAAAGGCATGGGAAGGAAGAGACAACTATAGCTACTATAAAATGATTAAGAGATTAATTCAATATTgacaaaaaggaa--------tataaaactgCATGTGCCTAATGTTTCACCATCCAGATTTACAAAGCAAACACTATTGGGCTAAAG---AGAGAGCACAATGT-CCCAACACAGTAACAATGGATGACTTTCACATGCCACTTTCATCAATGAACACGTCATGCAAACC--------------ACAAAGAGCAACAAACATCAGAGATAAACTGTACATCAAATGGATCTAAAGTGTA---ACAGAACATTTCATCCAACAGCTACAAAGCACACATTATTTTCATGAGGACATGGAACTATCTCTAATAGTA-------TATTGGTCACAAAACAAGCTT--AAAGAGTCAAAA--ATTGAAATCATATCCTGTTTTCT----GATCAC--------GAAGAGGAACTTC---------ATAAATTACACAAA---------TATGTGGAGACTAAGTGACATACTT-TTAATGGTGACAT-ATCaagttaaga----------aattttaaaaattgttaaaa-caaATGAGAATGGAA--ATAACATATCAAAGTTTATG----ACAACAAAAGGAGTACAAAGGGGAGTTTTCATAGCAGCAAGCTACCtacattaaaa--------------------agtaattt--caaatAATCGAGAACttagacaaataaa----------------aacaacagtagaatgaaaaaattaacaaatattaagtataaaac-------------actaaaataat--------gTATTgatca------gagttttttttttg----aaccagtaAAATTCTCAAACATTTACTTAACAAaactttaaacaataaaaaagatggaaaca--------------aaaatcagaggtgaaaaaggtgaaa-aaaaattaatactacACAAATACCAAAGATTCTTAGTGACTAGTAAGAAAAACTGCATGCTAACTAactgaaaaactt-------------aaatttctgGGTATATTCGATTTACACACATTGAACCATAAGAACATGAAAAACCTCACTAGCCCAATAAAATGTTGTGAGATTGAATCTGTAATATACAGTCTTCCGG-CAAAGAAAGTCCAGAAACGGCTaacttcactgctgaattttatcaaACTTTTATAGGCGGCATAATACAAGAGCTTCTCAACCTATTCCAAAGAACTAaaggggacaaaaaaaaaaaaacctttcataaCTCACTCTGTAAGGTCTACATTACCCTGTTACCAAAAGTCTGAGAAAAGAcaacacaaaaatagaacattgtacaTC-ATAtgcctaatgaacacaaatgcaaaatttCCCAAGAAAATACTAGAATTCAacagcacgcacacacacacaaacactaaaAACATTCACTATAATCAAGTTCATTTTATTCTGAGGAtccaaggatggttcaacataa------ccATCTAT-----------------------------------------GatgatttcaatagatgcagaccAAGCATTTAATGAGATTCAACATTCCTTCACGGAAAAAGTCCT--AACAAACAGGTATAGTATAGATAAATGgaacctcaatacaataaagg--atATATGACAAAGCCATACCCTGCATCACACCGAATGCTGAACACTTT-------TCCCTCTAAGATCA------AGATAAGGTGGTCCGCTCTCATCACTTTTGTTCAACACAGTACGAGAAGTTTTAGCCAGTGCAACG-GGTAACA----GGAAtaaaatgcatacaaat----------aaatatgAGCTATC-TTATTTGCAGATTATGTGtgtagaaaaagcaaaatactc------tCTTACCAGGAAACTGTTAAA-Ctgataaa----ttcagtaaagtaacaggattaaaaaacaaa-caaacaaacatcagtAGCTTTTCTATACAACAATAATGAATTTGCTGGTGAAGAAACCAGGAAAGCAGTCCCACCTACAGtaagtctcacacacacacaccccaaaac-------caAACCCCAAACCTAGGaattaacaaaacagt--------------------------aaagaaactgaagagaataCCCAAAAAGTG----CACTTCCAATAC-------------AGACCAG------AAAGATA------CTGCTTAAAAAGTTACCTATACGTTCAGTAGTATCTCCATCAAAGTATCTGAC---ATTCTTCACTTAACTATTAAAGTCAATTCTAAAATGAACACAG---AACACAAGACCTCAGATAGTCgcaac---------aaataaaaaaagcagaggtcaa--catAATGCC---------------------AGAAACAGTAACCAAAACTAGTACGGTATTGGCACAAAAAAAAGGACACACTGACCAAGCCAGATGAATAGATATCCCTACAATAAATCCACCCCTATACTGTGAACTGATTCTTAACAACAGTGCCAAAGATACACAGGGCGCTGGAGAAATGACACTGTTTTCAAC----------------------------------------------------------TCTCACCCTGTACAACATTCAactccaaatggatcaaagagctacaCGTAGAA----------TTTAACtactagaaaaaaaacaaagaagcagcaCTTTAGTACATTTGTACAGGCAGTAATTTTCTGGACAGGACCCTAAAAGCATAGGAAACaag--caagaaatgataaatggTATTACCTCAAGTT--Aaa----ctgtacagcaaaggaaattaATGGAGGAAATTAATAAGGAAATTA----ACCAACGATATGGGAGAAACAATCCGCCAATTATTCATCTGACAGAGACTTAATATCAGAAGAtataagaagtttttaaaaa

a score=39878
s chr3           17385598 1905 + 160039680 AAAGACAAGGAGGGACACTTCATTCTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGAGCAGCCACATTCACTAAAG---AAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCA--TGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTG---ATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT---TTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGA--GTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATT--CTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCT-TATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGAC-AAAAACCACACGATCATCTCGTTAGATGCA--GAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT---AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG--------------CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAG-GCTGCCCACTTTCTCCCTACCTTTTca--acatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttc
s HiC_scaffold_1 67242780 2032 - 233722169 AAATGTAAAGGAGGTTACTACATCCTAGTAAACCAAACAATTCAACAGgcagagataacaattataaatatatatgcaccaaacattgGTGAGTctcaatttcataaaatataaactacagaaaaatataaGG-ACTGATAAACACCAACACAATCATAGTAGGAAACTTTAA--GTCCACTCTCACAAACAgacaggtcaactagacaaagaaa-tgaagaaagaaatatcagagttaaatCACATcattgaacaaatggactttacCTACATTTGCAGAACATTTCATTCAAAAACAACAGAATGTACCTTTTTCTGAGCacta------attttctccaaaaaagacC-----------TATATATCATCCTCAAACAAATATGCAAGATTTGAAATAATCTCTTGTATATTATtggataatagaaaaataaaattagaaatcaacagTTAAGAACTCATAAAAACAATGCTAACAT----ATGGAAATTCAATAACACAGTCTTGAATAATC------------------------AATAAGTCACAGATTCAGTTCCAAGAATCAAAAACATTAGCAACACAAAATACCAAAACCTATGGGACAGGACGAAAGCAGTTATAAGAGAGAAGTTTATAGCTGTAAATGTGCTATTTAGAAAAATAAGGTGATGACAAAT------AACCCAATAATGTATCTCAAGatattagaaaaacaagagcCATTCCTACCCAAAAcctgaagaaggaaagaagttatACGTGTCAGAATAGAAATTAAGGTAAttcagaccaaaacaa--------------aaacaaaaaaagagtagtTTCCTTGAAAGTATAAacaatacatataaatatttagccaaacttttcaaaagatagaaagaaaacgTTTATACAAATGCAATTAGAAATCAAAAaggcaccaggcatggtggcacaagcttgcaatctcagcattctggagactgagacaggagcatcacagTAAGTtcgtttgaggccagtctgggatacatagtgagtttaagggcagcctgaactgcataatgaaaccctgtctcagaaatgcaataaataaacaaataagctaGAAATCAAAACTAACACTGCTGAAATCCAGAGGGTTATAAGATTATTCT--GAAAACTTACATTTCAATAAATTAGAGAaactagaagaaatggataaattcctaggCACATATGACTCACTGAAAgtggatcaagaagatatgaaaactCTGAACAAACCTATAACAGGCACTGAAATTGAAGCAATAATAATTG---TACTGACTAAGAAAATCCCAGGACCTGATGCAGTCACTGCTGAATCTTaccagaaatttagagatgaactGATGCCTGTGTTCTTCAGTATCTTCCATAAAATTGAAAGTAAAGAAACTTATCACCAAACTTATTCCTTAAAGTTAGCATTGCCCTGATAACAAATTTGGACAAGGACTcaacacaaaaagaaatgtacaggTCCATTTCCTTaaatgaacatagattc-aaaatCCTCAACATGATCCTTGcacacagaatgaaaaaaatcttttaaaaaatcatataccATGACAAAGTCAGCTTCATTCCAGAGATGCAAAAATGGTTCATCatacaaaaatcaaagaatgaaatacatcatataaacagaaataaggataaaaaatcacataatcatctcaatagatgcatctCAAAAGCCTTTCACAAAATCCAACACCTACTCATGATTTAAAAAGTCAGACAAAAATAGGTAGGGAAGGAACTTTCTTTAAACA-GATAAAAGCTAT-TAAGTCAAATCCACTGTCAACATCAtgctaaaaggaaaacaaacaaacagaaaactctgagaacattccccctaaaatcagaaacaagacaagaatttATCACTCTCCCTATTCCTGTTTGGTATATAGTACTTGAAATCTTAGCCAGAGTAATCAAGCAAGAGAAAGCAATAAAAGGGattcaaataggaaaggaagaattcaagCTACTTTAATTTGCAAAGCACATAATCCT-TATAGAGAAGACTCAAAAAA---CACCTGAAGATTTTTAGaactaataagcaaattc

a score=6468
s chr3            17385696 307 + 160039680 ATTCACTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCGCCTCACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAA-CAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATAC-CTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGT
s HiC_scaffold_1 207020787 302 - 233722169 ATACATTAATCAAATATTAGGATACTTTAGGGGAGG-ATAGAGTCCAATACGGTAACAGTAGATAAATTTAACACCCCACTGTGAGCAATGGAGACATCATTCAGACAGAAAATCACCGAAGAAATAGCAGAGCTAAATTGAAGCG-TAGATCAAACGGACCTAACAGGTATCTGTGAAACATTACATTGAGCAACTGCAGAATACACTCTTCTTGTGAGCA---CATGGACTATTCTCCAGGATAAAT--AGTGGCAAACTACAAAACAATTCTGAATCAATTTTGAAACACTGAAATCATACCAAGT

a score=31525
s chr3           17385743 1312 + 160039680 ACACAATAATAGTGGGAGACTTCAACATACCACTTTCACCAATGGACAGATCATGGAAACAGAAAC-TAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG----AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG-----TTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT------AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAA-----TAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATAT
s HiC_scaffold_1 81049449 1276 - 233722169 ACACAGTTATAGTGGGAGACCTCAGTATCCCACTATCAaaaat----agatcaaccagacaaaaatatcaacaaacacatatcagagttgaacaaaactttcaaacaaatggacttaatagatgtctacAGTGTGTCCCACtc---aacaacagaaaacacattcttcttagaAGCATATGGAATGTTCTCCACAATAAACCATATAGGATACCATAAgccatgcttaagtaaatgcaaaaaaatgaaaattattctttACATATTACCAGATCAAAGCACAGTAACAGAGAAAT-CAATGACCAAAGAagccacagaaattatgcaaatacaaggaaattaagcaatattgttttgaataatcaatgagtcacagaagtaACCAAGGGAG-----------TTCCTAAAATCAAACAGCACTACCAGTACAACATTCCAGAAATTATAAGACATA--GAAAGCAGTTTTAAGAGGGAA---------------TATCCACAACAGGAAGACAGAACGAGCACAAATAGACAATCCAATGATACACCTCAAGGTCCTCCCAaaata--atccaaat----ccaaagccagtacaaggaagaaaattataaagatcagaacagaaattaatgaaattgagacaaaaaataaaaccaattaaaatgaaCAATGAATCCCAAAGCTGACActtcaaaaaaatgaatgaaatagacaaatgcttagccaatcttatcaaaaaaga-aaagagaagacctAAGTCAGTGTAATTAGAAATAAAGAGGT-GAAATCACAATGCACATTGCCAAAATCTAAAAGAATATTAATGACTGCTTTTAAAGGCTGTACTCCAATACATTGGAGAACTCAGAAGAAGTGGAAGGACTTCTAGACT----CTATGAATTTCAGTAGAAACTGAACCCAGAAATATAAACAACCTGAATATTCCAATAACAgccaatgaaattaaaacaataatttttaaaaaaaccctgccaactaagaaaagtccaggatgcaatggattcactgctgaaatcTATAAGAACTTTAGGGGAGATCTAATGCCAATgttcctcaaaatctttaataaaattgaaaaggaaggaatacTTTCAACATTATTCCTGGAAGCTAACATTACCATTATTccaacaacaattaaa---------aaaaaaaagaattacatgcCAATTTCTTTAATGATCATGAATGCAAAAGTTCCCAACCAGATacaatactggcaaacagaatacaacaaattatcaaaatgatCATACATCTTGACCAAGCAGGCTTTCTCCTAGGGATGCAAGGGTGTTTCAGTAT

a score=15633
s chr3            17385797 515 + 160039680 GGAAACAGA-AACTAAACAGGGACACACTGAAAC--TAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAA------GCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA
s HiC_scaffold_1 127275207 512 - 233722169 ggaaaaagacaaaaaaaaaaaaaaaaattaaagcaataacaGCATTGat----caaatggacttaacagataGCTACAGAGAATGTCATTAAATGACAACAGAATACACAATTTTCTCAGTAGCACATGGAACTcattccaaaatagaccacattttAGATCATAAAGAAtatctaaataaatacaaaagaatttaaataatcttCTGCATATTATTAAATcataacagaataaagctaaaaatcaataggaaaataaaccacagaaattaCATGCCAACA----CACGAAGATCAAAGAGTACATTACTATATAATCAAtacatcacagaagaaatcagggaTGAAGTAAAGAAGCTTCTAGAATCAAATGGCAAAGGAAGCACAACATGCCAAAATGTATGGGACACAATGAATGTAACACCAAGAAGGGAGTTTATAGTTGTGAGTATATACAATAAAAGAAGTGAGCAATCCCA----AGTAACTTAATGATGCATTTtaagttcctagaaaaacaagaa

a score=55823
s chr3           17385808 2210 + 160039680 CTAAACAGGGACACACTGAAACTAACAGAAGTGATGAAACAAATGGATCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCA----CCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCT---TCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAA--------ATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAG----GGCACAGGGACAAAATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTT-Tcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttct--caatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc-gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaa----ctgcatggtactggtatagagacagacaagtgga
s HiC_scaffold_1 97120739 2141 - 233722169 ctaaaagaaaacccactagaA------------ATACAGCAAATGGATGTGGTAGATGTCTGCAGAATGTTCTATCCTAcaaaatcaaaatacacattcttctctgctgcTTATAAGACAGTCTCCAAATTAGAACACATACTAGCTTatagagcatgcttaagtaagtgaaaaggaattgaaattatctcatgcgtATCATCAGACCAAGCATAGTGCAATGAA-------TTggaaatcaaaagaaatcacatatTTC--ATAAACACATG-CAATTCAACAATGACCTCCTGAATAATCATAGGGTCTCaggtgaaatttaagaaaaagttaGACAGTTTTACCA--TTAAGGCCAATG------CAACATACAAGAACTTATGGGGCACAATGAAATCAGTCCTATGAGAGAAATTCATAGCACTGAATACCCAagtcaagaaaaca---gagcaagctcaaataaacaacttaacgCTAAAACTCAAGTTTccagaaaaggagcaagtcaa---gcccaatgtTTGTACAGTGAAGGAACATTAGAGATATTGAAGCAGAATAATG----CAACAAAG-----ATTAGGAAAACTATATAAAGAATCAGTAGATTGAATAGTTAATActttgacagattaaataaaactgataaactctTAGACAAccttctcaaaaaaacaaaagaggaaaaaaatcctcaaatctatgcaattagtaatgaaaagaatgaaatcacaatACTTTCTGCAGAAATGTAA---GTCAACAATCTCTACTTCAAGAACCTGTgttctaataagatagaaaacacaaaagaaatggatagattcctagatacacatgagTTATCacagatgaataaagaagatataaaatttctaaataaaccaatgtcaatcagtgaaattgaagatacaattaaaaacctacaaacagagaaaagcccaggacctagAAGATTCCTTTctgaattctacatgaaatttaaagaatACCTAAATCCGCTACTTTTCAAATTCCTTAATgcaactgaaagggaagcaacgctcccaaattcattcctgaaattAAC--CTATTTTGATGCCAGCATCACAGAAGGTTCCAACCAAAA-AGAGAGCTATAGATCAATGTCTA--ATGAACCTAGACACAAAAATCC-AAATaatatactggcaaacagaatgcagca----atcAACAAGATTATATATCGTGACCAACTAGGACTCATCCCAAGTATACAGGGCT-GTTCagaatatgcaaatcaataaatataatacattaaattaacagagccaagaacaaaatgTATATGATTATCTCAATGGACGCAGAAGTG----TTGACAAAGTTGAACa-ccgttcatgataaaaaatactatagaaaattggaat--aaaatctTTATCTCCATCTGATGAAAGTCACCTATGACACACCATCAACCAACAT---ATTacatggataaaaactgaaaactttcactctaaaatcaggaacaagacaaggatgttca--ttatcaccactgttatcagcatagttctggaaacattagccagagcaattagagaacagaaaaacataaaatgaataatgataataaaa-aagaatttaaattatca-tttctgCAGATGATATAGTACTCTAAATAGAAGGCCTCAAAAATTCTGCCAAAGACATTCTAgagttaataatcaaatttaataGCGTAGATGGAcac--agtcaacactcaaaactcaattgC--------------------AACTCACTGATATTGACATTAGGGAAAAAACATCTTTATAATagtattcaaaaaataaataaaatacctaggaatcaatgtaATAAAGTAAGTAAaggatctttacattgaaaac-taaatactctgaaaaaggagattgaaagatatatcagaaaatggaaatatacccCTTGTTATTGTGTAGGAagagccaatatagtgaaaatttccaccttccaaaaattattatacaaatttaatgcaatcctgatgaaaataccaatagcatatcacatagaattagataaaacagttctaaaaatcatttgtaaccagaagagaccttaaaatagcaaaagcaattttgggtTACAAAGGCATGGAAGG-GGCATCATAACtcatgatttgaaattatactacaaaactactatgataaaaataacCATCATGGTACCGt--cagaaacaagcaaacaga

a score=12655
s chr3            17385846 1326 + 160039680 ACAAATGGATCTGACAGATATCTACAGAACATTTTATC--CTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACAC----------------AATG------AAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAG----CAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-------------CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-------AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCA-----CTATTACTCTGATACCTAAACCACAGAA--------------AGATCCA-------------ACAAAGATAGAG-------AACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAAT-CCTTAATAAAATTCTCGCTAACC-----------GAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGG-------------ATGGTTTAATATACG---AAAATCCATCAATGTAATCCATTAT-------------------------ATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA
s HiC_scaffold_1 196021386 1363 - 233722169 ACAACTAGAGGTAACCAACATTTATAGACCATTCCAACAACGAGAGCAAAA---TGTATGCTCCTCTCAGGCAGACATGGAACTTTCTCAAAAATACACCATATGTTAGGCCACAAAACAAGCCCTAACAAATTTAAAAGGATTGAAatcatgcaa-ataaaattttgaaacataaagGAATTAAATTGGAAGTCAACAACAGAAAGAGAGTTAGGAAATTCACAGGCatacagaaatt-aacagaa----gCCCAAGTAAACAATGATTCAAAAAGTAATAGTGA---ATATTAGAAAC------ACATTCAGATGAAATGAAACCACAACATAAGAGCAACTATATGTCACTGAATTAGATAAtttagatgaaataaaaaatatttct-ataaagaCACATTTACCTA-AAATGACTC-----AAAAAGGATTAAATGCTCATAGCAGGCCTCAACCCAATAAC----CTAGTATTTc---agaataaggaatgaaaaatagaataatagcGAGCTAAAGTAACATAAGCAGcagaaaagaactaaaaattatattgaaaataaatgacagaaaattattaaaaagaagag------agaatattAAGGAAAGTAAAAATTGAACCTTTTAGAAGAACCACACAATGGACAATTTTTAAGCTAGATTTAGCTCGAGAAAAACAGTTAAGATTCAGGTTATTAAGATCAAGAATAACAAAGG-GTTATCACTGGTAAGtttgaagaaatagaagaaaagaacagG--ATTGTATAAGCCACCCTTTTCCAGGAAATGAGACAAATTGGACATAATGga---------------------------------aaatca--------ttaattttatagACATTAGCAAATT------GGGAATtcagtaaccaaaaaaaaatgccACATACAAAGCATGAC-----CCAAATGGCTCCATTGTTGAAATCTACTAAACACATAAaagacatttaatatttattcttcaccAAC----TCACCAGAATAAAGTCAAAACAATTATTTCCAACTCCTCCTATGAGGCTAATAGCATATTACTGTAATATTAAAATCAGAGCACAGGGTCACATGATGGATGCATTTGTTATGTATCACAGTGATGCAGTTTAACAAATGACAGGTCACTACCACTCATGAGTGT--AAGCAAAAACGTCTCAGCAAAATTGTAGCAAATCAGATATGtataaaatgcagaaatatataaaa--aattatctAACATGATAAAATGGTATTTATGCTAGAAGTACAAAGTTCACTAACcaataacattaaaaatgtgtTAAGAAACAATCAATGGATTCTATCATTCAACAATGAATCATAAAACACAAcattaacagaataaaagataaaaa-cacaggAGCATCTCAGTATATGCAGCAAAAGCGTTAGACAAGCTGC-ATTCTCTTTCATGATAAA

a score=3877
s chr3            17385857 136 + 160039680 TGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAAT
s HiC_scaffold_1 216284955 136 - 233722169 TGATACCTATCTCTAGAACATTACTGGCAGCAACTGAAGAATGTCTATTCCTCTCAAGTGCACATGGTACTTTTACCAAGACAGATGGTATGCTAGGATATAAAATAAGTCTCAGTACATTTTTAAGTACTGAAAT

a score=47754
s chr3           17385859 2456 + 160039680 ACAGATATCTACAGAACATTTTATCCTAAAACAAA--AGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCA-CAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACA--CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTT-GGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAG--GAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA---AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAA------------------ATCCAAAACACCATCA---------------------GATCCTTCTACAAAAGGCTATACT------------------------------CAACAAAAC--------------TGGAA--------------------------AACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTAT---TAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA-AAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCT----AACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGAC-------AAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAA----------------GGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtactt-gaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcag--aagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtact---------------------------ggtatag----------------------------------------------------------------------------------agacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagaca----ctgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaa
s HiC_scaffold_1 72283543 2558 - 233722169 ACAAATTTCTAAATATCATCCTTCACTAAAACAAATCAGGGCATACT-----------AAAACATGG--CTGGTTCCAGAAC------AAGAGTAGGTCAATAAAACAAGcttaagaagatgtaaaagaattgaaattataccatgtatatttttatatcctaCAGCAATAAAGTTAGAAAtcaattacaaaagaaaacacaaaaattatccAAT-GCATGAAAACTAAACAATAAGCTCTTCTTCAAGGGATTAgag---aagaagaaatcaaagaagatgtTAAGACAGTTTCTAGAACTAAATGATGATTGCAGTA-AACATAATCAGAATTTAAGGGACACAACAAAAGCAGTTCTAAGTGGGAAGCTTATAGCTGTAAATGCCCACATGAGAAAAGCAgagcaagcccaaataaataacctaacaaTGCTcttcaagctcctagaaaaacaagaa--caattcaaACTCAAAAGTCATCAAAAGGGAGGAAAACATAAGGGTTAgatcagaaatcaatgaaattgagaccaaaaaaaaaaaaaaaaaaaaaaattcaatgaacCGAGTtaattcttcaaaagaataaacaaaacagacaaaccctTTGCCAAGCTCATCAatgtaaagcagaaaaaaaagacccaaatcaacacaattagaaataaaaacggtgaaatcaaaatggataccACTGAGTCAGGCGTGACagcgcatgtctgtaatcccagcactcaggaagttgaggtaAGAGGTTTCCCttactcaaggccaacctgagctacaaatgagaccctgtctcaaataacaaaaaaacaaaacaagacactgTGGAACTCAAAAAGATTATTATGTTGCAAGGAATCCAGAAGAAAtg---agattcctagatatatatgaattattaaaactgaaccaagaagatttaaaaactctAAATAATCC----------------AGGGAAGCGAtcataaaaaaaaacctaccaactgagaaaagcccaggtct------tttCACTGCTGGATTGTACAAAAACTTCAGGGGAAGATCTAACACCAGTGttcctcaagctctttaatgaaaatgaaaaagaaagaatatccCCCAAATCCT----AGAAGCTAGCACTACCCTGATTCCACAACTAGACAAGGATCCAACCAACAAagtgaactacaggccaatctctttaatgaatatagacgcaaaaatccttaataaggtACTGACTGGCAAACAGAGTATaatgaatcatcaaaaagatcatgcaTAACGAACAAATTGGCTTTATCCTGCAGATGCAAGAATGGCTCAGCATAtgcacatcaataaatgtaataaat--aactAACAGAAtccaagatcttttaaaaaaatgacatgatcatctcaatagatgcaaaaaaggcttctgataaaatccaacagt--ttcctgaaaaaaaaaaaaaaaaaaaaacaaactcaagaaaATAGGTAAGGAtggaccttatctcaatctgataaaatccatttaTGAC-TACTATTAATTAATACCATATTAAAtg-------actgaaagcttttcctctaaaatcaggaacaagacaagaatgcccACTATTACCATCCCTGTTCAACACAGTACTTGGAAAaattagcaagagcaattaggcaagaaaaaga----aaaggaatgtggatagaaaaagaaga----aaaatttccattATTGAAGACT------TAGAATACTCAA--------------CACACCAAAGGACTCt----ctgaataaccaaattcagtaatgtagtagGATATA--------------AAGTCAATAGGGTTCCTATACACTAATATGAACC---TAAACAAAGAAATGAGG--AACAATACTTTTTATAATAGCATGAAGAACCATTAAATATATAGGAATTAACTGAACTAAGG--------GATCTCTATGATAAAAACTACAGTATGCTGAAAAAGGGAAATCCAGGAGATCATGGGAAAAATGGTAAGATAGCTCCTGTTCCTGAACAGGCaaaaccaatatagtcaaaatggtcatacttccacaACTGATACGtggatttaatgt------------aattccaac---aGTATTCacaaaactggagaaaaaaatcctaaaactcatACAGACCAG-AAGAGACTCAAAATAGTAAAAGGAATCATGGATAACAAGAGGAAAGTGGGGAGCTTCTTAATCCCAGACTT-GAGTTGGATTGTggagctacaatgataaaaatagcagggtactaacacaaaaacagacaccaggcccgagggtttagctcagcggtttgAGTGCCTACCTaccaagtgcaaggtcgtgagttcagtccctagtaccaaaacaaaaacaaacaaaaaataaaacagacaagagGATCAATGTAACAAAATAGAGGGTGCAAAAACAACCCCAAATACATTCAACAATTTGATATCTGACAGAGTGGCCAAAATCAAGCACTAGAGGAAAGAAAGCCGTGTTAGTAA----TGCTGAGAAAACTGCCTCCCTACCCGAACAAGACTG-----------AAATCTCTCAtcaggcactaaactaaaattaaaatagatcaa-gaactaaatgtttaaaaagaaatagttgctgaaa---------gataaaatagttaaaaCTCTTG-AGTCACTGGCGcagacaaggactttctgaa

a score=5279
s chr3            17385873 195 + 160039680 AACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAATTGACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAAC
s HiC_scaffold_1 102006868 183 - 233722169 AATATTCCAtccaatagaagcagaaaaatcaGTCTTTTAAAGCCCTTTAGGAACATTTTCCAGGATAGAACACATGTTAGGTCACAAAACAAGTCTTAACAAACTGAAAATGTCTAAAATCACACCAAGTATCTTTTCCAACCACAatggaataaaatta------------gaaattaataacagaaagaaaac

a score=9468
s chr3            17385925 463 + 160039680 ACCTTCTCCAAAATTG-ACCACATAATAGGTCACAAATCAGGCCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTG-ATCTTCAATAACAAAATAAATAACAGAAA---GCCAACATTCACATGGAAAC-----TGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 135153238 439 - 233722169 ACTTTCtccaaaattttgccaaatactAACCCATAAAGCacacttaaataaatacaaag---------ttatCTGATATAT----GAAaatcatagtacaatgaaactggaaaccCAATTGCAGAAGAAACAACAGAATTATGTAAACACATGGATATAAACATacttgaataa--------tcaatga-------gtcatgggagaaataaaggaagaaagtagATAATTGcattaataaaatgataatgcCATTTCAACATACCAGAGCCTATGGGGCACAATGAAATCAGTCCTAAGAGGGAGATTTATAGCTACAAATGCCTACACCAGAAAAATATGgaaagcccaaataaataacctaatgaaaCATCTaatatc-caacataagaacaagGCAAAT----CCAAAGCTAGTA-CTGGATGGAACTTACAAAGATCAGTGTAGATGTTAataaaattgagattaaaa

a score=82295
s chr3            17385970 3104 + 160039680 AACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCA---CAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCA--AGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAA----GGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTA-----TTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACC--------------------------------TTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaat--taactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaa-gatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaa-ctcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactg------------gtatagagacagacaagtggaccaatggaatagaattgaagac---------ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgg-gaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga---agccccaactggtaagaaggacacatgctccactatgttcatagcagccttattt-----------ataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatc-tacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacct
s HiC_scaffold_1 175176136 3083 - 233722169 aataaatatagaagaatttaaattacctcatgaatattatcagatcatagtgtaataaaattagaaatcaatgacaaaagaaaccacacaaactatgcaaacacacagaaattaaataataccctttTTAAT-ATCAATGGGTGGCagatgaagttaaagaaaaaactaGACAGTTTCTATAAGT-------GATAAAGCCAGTATGACATACCAGAAGCtctgagatgcaatgaaagcagt-caaaGAGGGAAGTTATTagcagtgaactcccacatcagaaaaaaaaagaatgcactcAAATAAATCACCTGATGATGTACATTAAGGTCCTAGCAAAACACGAACAATCCAAACCCAAAGCTACTGTAAGGAaagaagttataaagatcagggcataaatttaggaaattgagattgaaaaaa------acagaatcaatgaatcaaaaagttatttatttcaaagattaatcaaaataaacaaaacctttGCTCT-CTTACTaaaataaggg---aaagaaaagactcaaacccaggcaattaggaatgaaaaatataaactcaCAATGGATTTTGCTGAGATCCAGAGAATTAgtagtaactactttgagaacATGTACCTAAAAAAA-TGGAACATTCAGA---GATGGACAAATTCCCAGA---------GGTACCAGAGCTGAACTAAGACAGCATAAAAGTCCTGAATGAGCCAATAGCAGCCagagaaattaaaacagtaaCTCTTTTAAAAA-----CTACCAAGAAACACCCAGGTCCTGAAGGATTcattgctaaattctacaagaataaAGAATATCTAATGCCAgtaataaagaataatttaaagaatatctaatgccagtactcctcaaactctttaatgaaattgaaaagaaagaaatattcccAAAATCATCCCTGGAAGTAACCTTTATCCtgtttccaaaaccagaaaaagacccaaccagaaatgaaaactaaagctcaatctctttaattaatacagatgcaaaagtccttaGTAAGATAct-acaaacagaatgcagcaaatcactaGAAAGATCATGCATCATAACAAAGTAGGATCAATTTCAGGAATt--------gctcaacatacacaaatcaataaatttaatacaccaaataaacagaagcaaggacaaaaatagaatgatcatctcaatagatgcagaaaaaatactTGACAAAATCTAATATCCATTCATGACAAAAC----------ACTAGGAATAAAATTTCTTCATCTCAACCTTGTGAAAGCTATTGATTACAAACCAGTGGCTAATATCACATTAAATGGAGAGAAGCTCAAAGCtatccctctaaaatcaggaacaaagtaAGGAGGTCCACCACCACCACTTCTGTTTAATATAGTTCTCCAACTATTAGCTAGagcaataaaataagagaaagaagtaaGGGACCCATGGATAGGGAAGgaaaaacttaaattatcattatttcctaATGACATGATCCTCCAAATAGAAGACTCCAACAACTTCACCAGAAGACTCCTAGAACTAATATTCAAATTTGATTGTCTAACAGGATATGAAGTCATAGTCCCA--AAATTAGTAGCATTCTTGTATACCAATAACAAACTCCCTGAAAGATAAATCAAGGAAACAACATCATTCACAATATcaccaaa----atgaaatactgaggaatTAATATaagcaaagaagtgaaagacttctataatggcaattatagtactctgaaaagtgAGATTAAACAgaatatcagaaaacagaaaggatatCC--TGTTCCTGGATAAGCAGAAGCAATTtagtcaaaatgaccacactACCAAGACTGTTACATAGATTTAGTGCAATCTCAATCATAATAGCAATCACATTCCTTCA--GAACTTGAGAAAGCAATCCTGAAAGGCATATGgagcaagaaggaaaaaagaatagcaaaagtagtgttaagaaacaaaggcaaaataggaggcatcacaatcccaggcTTCAAA----ACTACa--------ttgataaaaacagcatgatatggacaaaaaacaaaacagagaaacagactcgtggatcaatggaacagagtagaagatacaGAAGTACCAGAAGTAACTCTAGGTATACTCAGCTATATTATTTGTGACAAAGGGGCCAATTCC-TACACTgcaggaaagatagcctctttaacaaatgatgctgggaaaactggttattcaCCTGCTCAAGGCTGACCCTAGATCCATGTCCCTCACcgtgcattaaactaaaatcaaaatagatcaaagatatgaatgttagaacagaaacaat----tttctagaagataaaat-agtaaAACTCATGATGGTATACTTGTAAACTAAGACTTTCTGGGCAAAACCCCAGTTACACAAAAAATAATACcaagagtcaacaaatgggatcacatcaaattaaaaaataactgcatagcaaagaaaactactaacagaatgaagagacaacctccagaatggaaaaaaaattgctaGCTACTCC---TCAGA----Agactaatgtctagaatatatgaagaactcaaata-----aacccccaaatttaaagaactaATT--AAAAATGGG---CTGAAATGAATAAACCCGTCTcatgtgaagaaatacaaatggccaataaatacatgaaacaatgttcaacaccactggtcattaaagaaatgcaaataaaaaca---ctaagattccatcttactcccaAAAGAATGCCTATCATCAGAAACTGA-CTAATAACAAATCCTGccaaggctgtggggagaaaagaacacttctccattgttagtgggACTATAAtctgatacaaccactatggaagtcagtatggaaattcctcaaaaatctaaaagtagaaattccacttgacccagctaatccccttttaggtatttttccaaaagagttaaagacattgcATCATAGTAACGTAtgtatgcccatgtttatagccatgcaatttgtaatatataaataataggtaaatcttagaaacagcccgtATGCCCATTAACAGTTGAATagat--taaaaatgtggtattttatacacaatgaagtggTAGACTGCCatt-aaaaggataaacttgagtcaatTGCAGTCAATTGGATACAACT

a score=8310
s chr3           17386050 387 + 160039680 AAATAACAGAAAGCCAACATTCACATGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA------AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 24186805 369 - 233722169 AATTGGTAGAAACTC--CATGTATTTGGAGACTAAATAACATGTTATTGAATAATCaataaatcacagaagaaatcagggaagaaataaaaagatttctaGAATCAAATTGCAATGGAAGCACAACATATCAAAGCCTGAGGGACATGATGGAAACATTTCTAAGGGGAAATGTCATAGAT-TAAATGCACACGTAAGAA---GAGAGTAATCTCAAATAAATAACTGAG----------AAAGGTCCTAGAAATAACCTAGAAAGATAAAGAGTAATCCAA----ATCTGAAGGAAGGAATTTacaaagatcagagtggaaagtAATGAAGTTGAGACTAAAAA----ACACAAAGGACCAATGATGCAAAGAGCTGATTACTTGAAAGGAT

a score=64308
s chr3            17386099 3061 + 160039680 AATGATACCTTGGTCAAGGAAGGAATAAAGAAA---GAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAA-GAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGG-GTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATG-----AAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCT-------TCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGA---GAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGC-AGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC-AAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactt---tttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccat----------------------------taaaattccaact------------------------------------------------------------------------------------------------------------------------------------------------------------------caattct----------------------------tcaacgaattaga--aggagcaatttgcaaattc-----------------------------atctggaataaca-------aaaaaccgaggatagca-----------------aaaactcttctcaaggataaaagaacct-----------------ctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttct---gcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagat-aggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctca-gaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggct-tgtacaaccactctggaaatcagt-ctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgg-gcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacaca-------atg--------gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtactcactgataagtggatactagcccaaaa
s HiC_scaffold_1 166598720 3216 - 233722169 AATCAAGTTTTGATCAGTGGATCattcaagaaatagaaaattttgaaatttttagtctcaaatgaaaatggaattaCAACATACCAAAATCTCTGGGACATGGCAAAGGCATTTCTAAAGAGGGGAGTTTATAGCTATGAATGCTTGCATCAGAAAATCTCAAATAACCTACTCTG--------------CCTCTCAAGGTCTTAGAATAACAACAAGTCAA---AACCTAAACCAACAGAAGGAATAGAATAGCGATTATTAGAGCTTTAAGTTAATGAGATGGTAACTAAcagaa----------gatcaatgaaaca--gagtcatttctttgaaaaaataaacaagattggTAAGCCCATAGTCAAACtaaccaaaag----agagaaaagacccaaatcagtacaattagagatttttttaaaagggagaggATATAACAGACACCAGTAAAATCCAAAGAATTATTAGTGACtcctttgaaaacctatattctaataaactAGAGAATCTAGGAAGAATGGGAAAATTTCTAGTTATACACTA--TGCCAAAACTGAAAACTGAACCAGGAGATGTACAAAAACCTAAACAGATctataacaagcaatgaaattggaGCACTAATAAAAActctatcaacaaagaaaagtccagaacCATGTGGGTT-ATTGCTGCATTTTACCAGACCTTTATAGAA---CTAACACCAGTGCTGCTCAAACTATTGCATGAAATAGG----GAAGGAACACTTTCAAACTCACTCTATGAAGCCATTATCACCCTTATGCCAAAACTAGACAAGGAcacaaaagaggaggaaaaggattaTATGCCAGTATCTTTGATAAATATAGAttcaaaaatccttaataaaatacttgGAAACTGAATTCAACAACACATTAAAAAGATTGTGTACCATGATCAAGTCAGTTTCATTCCAGGAATG-------GTTTTAGCATatctaaattaataaatataatacac--catgaATAGAATCCAAGAtgaaagtcacatggtgatctc----aatgcaaaaaaaagctttcaacaaaatTGAACATCCCTTAATGATAAAAGCCCCCAAAGAAGTTAGATTTCAAAGGATCATTCTTCAGTATAGCGAAGCCCATATCCAATAAACCCACAGCCAATGTCATTCTGAATGGGGAAAAACTAAAAGTATTTCattcaaaatcaggaacaaggtaagaatatacattcttcccattcctattcaatatatttcttgaaattttcatTGAAACAGTTAGccaagaaa---atatagaaagaatacaaataagaa------aagttaaattatccttcTTGTTTACAGACAATATAATTTTGTACTTAGAAGACTCTAAAGACTCCATCAAGA----CTTAGAGCTGATAAA----TTCACCAAAGTAGCAGAATATAAAAtcagcatttaaaaatcaatagtttttCTGTATACCAACAACAGGCAGgt-----gagaaatcaagaaaataattttattcacaatagcttcaaataaaataaaataactaggGATCAACCTAAACAA-TAGGTGGAAGACCTCTGCAGT-GAAATTTCAGAACACTGAAG-----AATTGAAGACGACACCAAAAGATAAGAAGACCTGCCATGTCTGTGGATTGATAGtactaatattgttaaaatggctaTATTACCAAAAGTAAACTATACATTCAGTGTAATCCCTGTCTTGGATACTTtcctcttattgctgagacaaaatacccaatgccaaAATAAAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGTAGAAAAGATTTTTTCTATCTCTTACATTGTATGTTGGCTACCCATCCTAGGGtgagtgtaacactcacacccataatccaagaattggaccatgaatcaatcacaaactccagaagcccacccccatgaccacatgaggctttggatggaCATCCAGACACTAACCATTAATAATACCCATCAAGGTACCAGtgatattcttcacagaactagataaTCGTAAGCACAAAGACCAAGACTGAAGGCATCAAAATAcccaatttcaaattatactcCAAACCCATAGTAACAATAAGAGCACAGTACTGGCACAAAACTAGACATGTAAACCCA--ATACAGAATGGAGAACACGGAAAT----CCCTACAACT------------------ACAAAGGAGCTAAAAATACACA-TTGAAGAAAAGCAACCTCTTCAAA---TGATGCTAGGGAAACTCGATATCA-CttgtagaaaattaaaactagatcccTATCTCCTGCATTG-Accacaatcaaatgaaaatgaat-aaagatcTAGATATAAGACCtaaaactttgaaactgctaACAGTGAA--CAGGAAAAATGCTTGAAAGCACAGGCACAGGCAAATGCTTCCTGAATAGGACTCAAAGAacacaggaaataatagcaagattCAACAAATGGAGCTGCATCAAATT---AAGTTTGCAGAGCAAGGAAAACAACAC----------------AGACAGTTTACAGAATAGGAGTAAATATTTAT--------ACTCTGATGACAGAATTAGTAGCTACAATATATCCAAAACTCAAAAGTCTTAATGCtgtaaaatcaaatagaatagtC-AATAATGGAGCAGATGAGTTGGGtaaatacttctca---aaagaagtacaaatggccaataagtatatgaaaaagtgttcaacatctttagccatgtgggaaatgaaagtcaaagatacattgagattccatctcaccccagtcaGAGTGACT---GTcaagaataca---aacaataaaagctGATAAGGAAGTTGGGA-----GGATCCTTTCATACCACTGGCAGGAATGTAAACTAAATGTAGCCTCTATAAAAATCAGTATTGGAGGGTCTTCCAACAACTAAAAATGGAGCTGTCGTTTCATTCACCTTTACCTCTTTTGGTATGTATACCCAAAGTCAGCAT--ACTATAGAGATAGCTTCATACCCT----TGTTCCT-GCAGCATAG--TACAGTACCCAAGACATGAGACTAGCTGAAGTG-CCTTTAATGGGTGAATGAGTGAAGAAAATGTAGTAGATGTGTAGATATTAACATGTGTTTAGTGAATACTATTCAACCATAGAGAAGAATGGAATTTTGTAATTTGTAAGAATATGGATAGATCTGAAGATTATCATGTTTAGCAAAATAACCCATACTCAA--------ACATCACATGTTCTTTGTAATATATG-----TAATCCaaaa

a score=19694
s chr3           17386182 1098 + 160039680 AAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAA------AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAA--------TTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTT-CTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA----TCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGA-AAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAAT
s HiC_scaffold_1 78466903 1069 - 233722169 aatcccacaGGGCACAATAATA-CAATCCTAAAATGAAAGTTTATAGCCATGATAGCAAAcattaaaagaacagaataattcCAAATGAATA-CCCAATAAAGCATCTCAAGGttctagaaatttttttaaaaagactaaattcA-----AAACTGTAAAAGGAAAACATTA--CAAAACCAGTTCCAAAATtcatgaaattgagactaaagaaa---tacaaaggattaataaattaaataaatgattctttgaaatgataagcaaaattaattaaatgttagccaaacatcaaaaaaaaaaaaagaaaaaaa----aatcaatgcaattaaaaataaaataggtgaaaTAACAAA----TCTGCAGAAATTCAGATAACtataagaaacaattttaaaaa-ctatattcaa--AAATTGGTGTATGTAGGATAAATGGAGAAACATAGACATATTTTGACATATTTGATTTATTGAATCTCAAACAAGA--GACTTAAACTCACTGAACAGACAataatc----aatgaaatagaaagagtGCTAAAAA----CTGCACCAAGAAAAGCCTTGGACTTGATGGATTTACTGCATAAATCTACCTGAACTTCAAGTAAGATCTAACACTAATAATCTTCAAG-TCttccataaaattataaaaaaaaggaGCTCACAAAACTCATTACTTGAAACTAGCATTAGCATAATACCAAAACCA-AGCAAGAACttttcaacaaaaa-ataaaactgtaggcCCATCTTCTGAGTGAACATAG----AAAACTcct---caaaataatagtaaaatgaaaGTAGAAGGTCATTAAAAAAGTCATACTTCATGAGTAAACTAGCTTCAACTCAAGGATGCAAAGACACTTCAACAAATGTAAGT-AATAAACATAGTGCCTTGCATAAACAGAGGGgagaacaaaaaatacatgatcaTCTGAATAAATTCAGACGAA--ATTTAACAGAATCCAAAATTCAATCATGAAAAAAATCCCTAATGAAAATAGATATGGAAAA--AACATCTCAAACTGATCTAAG-AATTTATGACAAATCCCATCCTCACATCATATTGAATGGGATAAAACTGAAAGCAAT

a score=24217
s chr3            17386305 1373 + 160039680 AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAG--AATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGA---AGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACA-------AAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATC---CAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAA----CCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatag---tacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaa
s HiC_scaffold_1 101941453 1243 - 233722169 AAAGGAA--------ACTCAAAATTTATAGGAGGCAGAAAATAAT---------------------------gaagatgagaagaaaaatagagagtaaaacagtgaaataaagaatttgttctttgaaaagataaatgaatcaACAAGTCTCTTGTATAATC------AAGAAAACCACACCAAAA----ATTCAAGTAAAttaaatatggaaaattataCATGACA-TGAATATTACACAAATGCAAAAGAACATTAgagattattttgaaaaattatataccaACAAAGtggaaaacataaaaggaaaatataaatttctggAGTG-TACAACCTACGAAA-TTATAGCAAGAGTACATAAAAAACTAGAATAGAGCTATAAAATGTAATGAGATTGAATCAGTAATAAAATGTCTCTCAACCAAG------------CAGGATAGCTTCACTAgg------taacaaacttttaaaaa---cccaATGCCAATGTTTCCTGAATTATTTTACACAattgaaatggagaaaaatatttt--caaattcattctaTAAAGACAGCATTATGCTGTTACTGAAATATAATAAGGGTACAATATTACAGTAACAAAGAAGACTAGAAACCAGTATTTCTGATGACTGAAGAtgcaaaaatc-tcaataaaatactagcaaaccaaATTATTCAACAGCATATCAAAAA-------------GATCAGGTTGGTTTCATTTCAGGAATAGAAGGATTGTCCAAAACATGCAAATCAAAAGGtgtaatacatcacattaacagaatgaaggataaaaaaaccccacatgattatttaaatacatatagaaaataaactttataaaagTTAACATCCCTTCATGATAACGTCTCTTAAG---TTAAACATGGGTGGATCATATTATACCATTATTAAGGCTATATATCATGAATCTTTATTCAATATCATACTGGATGGATAAAAGTGGAAAGCATTTTCTTTAAGACCAGAAACAAGACCAGGCTACCAACTTTCATTGCTCTTATTCAAAATAATACTACTGGAAGTGTAAGCCAATGCAATT--ATGAGATAAGACACGGAAAGTCAtacaaa-aggaaaggaggaagtcaaAA----------------------------------------------------------AGCTCTATTAGAACCAATATATGAATTCAGtaaaatagcaagatataaaaatcaatatacaaaattAGTAGCTTTCcaatatacaaataataaatttgtTGGGAA--AAATCATGGCAATAATCCCATTCATGAGGGCTACAAAACATATTAAATAGCTAAGACTAACT-TAACCAAGGAAGTCAAACACCCCAATGATGAAA

a score=9510
s chr3            17386351 652 + 160039680 AAACTCAGGGGTG----AAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAA-AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT------CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAAC----AGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAG-TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGAC-CAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCA
s HiC_scaffold_1 195772441 627 - 233722169 AAACTCGCGAGTACACAAAAT--ACAAgatagaaacaaaagaga--------aaaaccaatgaAAAGCAGAGTTGGTTCTTTGTTGAGAGCAAGGAAGT-GAAATCTCTTTAAGCAGACTAAC---------CATGAAAATAGTC--GAACactaaaatgaaaagtgaaagagTGTGTTATTGGCAC---CCTTGCAAAAGTGAAAAGGTTTATAATATATT---------GGTTATAATGTGTGCCAACAAA-TTAGATCATGTGGATGAAGCTTTAAAATTCCTGGACAGACACAAACTACTGCAAGGGATtcaagtaaaaataga------aaactagaaGACACATATTAACTAAAAGTACTGAATTAGTGTTTAGAAAACTTCCCATTAAAAAAAGCCCAGACCCATATTGGCTTAGCTGATGAATTCTAGCCAACATTTATAGAAGAATTACTTCAATTCCTTCAAATATTCATGCAAAATATAGAAGAGAAGGAAAGTCTTTCCAGCTTATTATATGAGGTTATTATTATCATGATGCTAACcagacaaaaacatttaaaatgaaaagaaaattatagatatTACATTCCTTGTGAATATAACTGCAAACATCTTCCTCAGAACACTAG-TAAATGATtccataaatgttttaaaaggattA

a score=56993
s chr3           17386403 2711 + 160039680 TTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACA---------TAACAAC----AGATCCTGAA------------GAAATCCAAAACACCAT-----------CAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATT-AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAG----TTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagc-aattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtac---------------tggtatagagacagacaa----------------------gtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgac-aagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatc---------cagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacat-ctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcct--agccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaagg
s HiC_scaffold_1 87320248 2503 - 233722169 ttAGTGAACTGAGCAGTTCGTGCTTTGAAAATTTGAGCAAAATAGATAAACCaatagtcttatttttaaaagg----aaagaaaagacccacatatatgcaattagaaatgaaaaaatttacaatgcCTTCTTGGCAactgcaaggtcgtgagtttgatttctggaaaaacaaacaaacaatgtatgtacatatatataatcttttgagaacctgtactctaacaaatgagaaaatgcagaagaaatggataaatttttaGATACATG--ATCTACCAAGGCTGAACCACAA--AGCTAAAAACTTTAAATAAGCAaatatcagtcagtgaaattgaagaagtaatttaaaaagcTACCAACTAaaaaaagctcaggtcctgacagattcactgccaaattcta-aAGAACTTTAGAGAAATTCTAGCACAAAttctcctcaaattctttaatgaaacagaaagagaagcagtacttccaaagtcattcctgggagcaagcACTACCCTCAttctaaaaatggaaaaggacCCAGCTAAGAGAGATATGTGCAAACAAATTTCTTTAATGAGcacagatgtaaaaatcattAATAAGCTATTGGCAAACataatgcagcaagtcatcaaaaagatcat-------gaccaaataggattcattccagggatgcagg-attgagtaatatatgcaaatcaatacatgtaattcACCTTAAAATTtgaagcaaggacaaaaaccGTATGATTATTTCCatacatgcagaaaaaacatttgataaaatttggtatccattcataataaaaaagaatcctCAAGAAAACAGGAATAGAGGGTACTTATCACATTTTGATAATGACCACTTGTGACAACCCAATGGCAAACAAATTACTTAATGGTAAGAAGCTGAAAGTTTTCCTTCTTAAATCAGGATCAAGACAAGGATGCTCACTACCACCACTTTTGTTCAGCACAGTTTTTGAAACACTAGTTAGAGCAaattagaaatgagaaagaaatgaaagggatatggatagggaaagaagaagttaaattatcattattcatggTTGACATGATCCT-TACGTAGAAGACTCTAAAAATTACATC--AAGACACTTAGAactaataactaaattcagtagtatGGCAGGAAATAAGGTCAagagtcaaaaatcaatagtgttcctatacagaaataacaaactcactgagaaggagattagggaaataatacctttcacaaGAGCACCAAGATAAATGAAATACCTGGGGATTA-TCCAACTCAGGCAGTG----------------GAAACCATAGTACTCTGCAAAAGGACACTGAGGTGGATATTAGAAGATGGAATGATATCCCCTTTTCCTGG---GACAGAGTCATTAGAGTTCAAATGGCCATATTCTCAAAACCATTATATAGGTTTAATTCAATTCCATTCAGGATAtcaataacatttattaaataactgGAAAAgagaatcctaaaatttatatgaaaatagaaGAGATCTAGAACAACGAAAGCAATgctgggcaacaagggcaagtCAGGGAGCATCACAAAGCA-GACTTtcagttatattacaaagctacaatgataaaaacaggaTAGTATTTTagtgagagagagtgagagagagacagacagagagacagagagacagagagctgtAGATTGATGTAATagaacagaagacacagaaacaactccagtcCCACTCtgctatcttatctttgataaaaggggtCAGATCCCTTTGCTGAAGGAAAGATGTCccctttaataaattgtgctgggaaAACCTTTTA----CATCTCAAAGCTTGACCTCAGATCCATTATTTTTACCACACACT---------------------------------------------------AACCCTATAGA------------------------------------ACGGGAAGATTTTCT--------------------------------------------------------------TCCAGCTACTCTTCAGGCCAAAGACTAACATCTAGACTACAAAAAGAGCTCCAAAATATT------AGAtcatcccc------------------------------------------------------------------aaatttaaagatccaatcaaaaaatggttgcctgaaataaatatacatttctcagatgaggaaatacaattGACCAGTAAATACATAAAGAA--GTTCAACATTGCTAGTCATTcaaaaagtgcaaattaaaacaacattaagattccatttcgcttcagaaagaatgactgtcattaaGAAATCCATCAGTAAAAAATGCTGGTGAGACTGTGGAGAGAAAGAATCCCTTCTTCATTGGTGGTGGAAGTGTAAACTGattcagccactgtggaaatcagtatggagattcttcaaaaac----------taaaattggaaattgcAACTATTTCTCTTTTGTGTATCCTtctcaaagagataaaaaaaaccccaccctgCCACAGCACTGCAAGTATATctatatttacagcagcacaattcctaACAGCTGAATCATGGAAA----------------CAacagacgaatggataaagaaaatgaggtacCTATTAAAAAATGGAGTAGCACTCTGTCACTGAGGTAAACG------TGAGgcttttgcaggaaaatggatgcacttgtaGGGCCCAATATTAAgcgaagtaaatcagacacacaag

a score=61922
s chr3            17386420 2632 + 160039680 TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACT----AAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAG---CCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattc----------------------caacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatc-tcagaagatggaaagat----------------------------------------------------------------------------ctccca----------------------------------tgctcatggattggcaggaccaacattgtaaaaatggcta-------tcttgc---------------caaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgat-----------------aaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcg--agaattgacaaatgggacctaatgaaactccaaagtttctgcaaggc-aaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaata----------------------acccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcagg---------------tgacagcagatg-------ctggc------gaggatgtg-------------------------------------------------------------------gagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaa--------gccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatg---aatttatgaaat
s HiC_scaffold_1 107590616 2836 - 233722169 TGgaactttaaaacattaaataaaatagacaaacacttagccaaccttatctaaaaaaggaaacaaagaaaagactcAGATCCATTCAAT-AAAGATTAAATGGGTAAAATCataacagatcctgcagaaatccagaaagtcAATAATACCTACTTCAA---------CTCTAGTAAGacggaaaacacagaagaaatgaacagacctctagatacatatgaattcctgaagctgaatcaagaagatataaaaattctaaataaaccagtatcattCAGTGAAGTCAAAGAAggaatttaaaa----acaatcaaaaagagTAACCCGGGTCCTCATGAATATGCTGttaaattctttaagaaatttagagaagatcaaATGCCACTAATCCTCa--ctctttaaggaaattgaaatgAAAGTAATACTCCCAAATTTATTCCTAGAATCAAGCATTACTC--ATACCAAATCtggagaaggatccaaccaaaa---acaactATAAGTCAATCTCTCAGCTGAACATCAatgcaaaa-tcttcaataagatactggcaaacc-aATGCTAtacatcatcaagaagattatgcagcATGACCACATAGGATTggtcccagggatgcaaggatggctcaatgTATGCAAACCAATCAATACAACACATTA-----ACATACTCAAGGTCAAAAACCATATAATTCTCTCAGTAAACACATAGAAAGCATTTGACAACATCCatccattatttaaaataaaa-caccaaacagATATTTGAATAGtgatttttatctcaatcttataaa---------------------agccaagGTCAAAGTAAATAATCAAAAATTGAagtctttcactctaaaatcaggaacaagacaatgatgtgcACCATGGCTACTCACATTCATCCTATTTATGGAAACATTAgc----gcaattagacaagaaaaagaactaaaaggaata-aaataggaaaa---gaagttcatttatccttatttgtagatgacatgatctttAACATAAAAATCCCAAAagactccatcaaaagacttctttGTTTTCACCAAAAAACTTCTATatttaatagccaaattcagtagcatagctggagacaaagtcaacattcaaaagtTAATTacattcctgtacaaaaataaCAGACTTACTGACAGAGAAATTTGGGAAACAata-ctttcacaatag-catacaaaaaatgaaataactaagaaaaaatctaacaaaggaagtaaaagatttttaCGTTGAAAACTAAGGTACTCTGAAAAGAGCAACTGAAGAGgattatcagaaaatggcaaaattaggaccaggaatatagctcagtggcacaagcacctgcctggctagtgcaaggtcctgagtttgattccctgtatcctcccaaaaaataaaaaaaaagaaaatggtaagaTTTCCCTgatcttgggtaggaagaaccaatatagttaaAATGATTGTACATCTTTTTGCACAACCACCCTAGCACAAAATTGTTagacagatttaattcaatcccaatcaaaa-tctaATAGCATATGtcatagaaatagagaaaacaatcctaaaattcatttgg------aagagacctaaaatagcggAAGCAATTTTAGGCAAAaagggcaaagcaggaggcatcgcaatccctgacttgaaaatacACT-CAGAACTaccatgattaaaaaaacaatataaaacaaacagcacagcactggcagaaaaacagacccaatgATCAATGGAACTGGTTAGAAGATGCAAAATCAACACCAAAGGCGCTCAGccactt-atctttgacaagggaaCCAAATGccttcactggaataaagatagcctctttaatgaatggtgctggaaaaactggctttctatatgctgaagattaaaactagactcattTCTTTCACCAcatgctaaattaaaatcaaaatggatcaaagatc-taatattaaaatagaaaaactaaatgtTCTAGAAGGCAGAATGAATAGAACCCTTAAAGACAATTGTGTAGGCAAAGAATTTTTGAACAAAACCCCA----TTTGCACAGGAAAATCACCaaaatcaacaacttggatcttaTTG------AAAGATCTGGCACAgcaaaaaaaaactaccaacagtATGAAAAGATAACTGACagtgtggaaaaaaatttttgtcagctct-tctcagacaaaggactaatatctagaatacagaaagaac------------aactccaaaaacaaaataaacagatgctccacatttaaagacccagtccaaaaatgggcatctgaaatgaataaatatttctcaaatatagaagtaccaatggcaaataaatatacgaaaaaatgttcaacatcactggttatttgagagacGCAACTTAAAAGAATGCT--GATTGCAttccactccagaaagaacagctattatcaagaagtcagggcctgggatttagcccagcaacacaagtgcctgcctggcaagcaagaggttgtgagttccacctctggcaaaaaaaaaaaaaaaaagtaaaagacatcaaccaataagaaatgctggaggtggggaaaagtaacccttctccactgttggtaacagtgtagactggtgaaacca-tttggaaa-cagtgtggagattcctcaaaaacctacaACTAGAAGTCCCATTAGACCTAGCTAT---tctttttggtatcttcctgaaagaattaaaagcatcacacc-----acagtgatatatgcacatccatctttatagcagcacagtttgtaatagctaaatcttggaaacagttcaaatgcccatcaatcaatgtatggataaagaatatgtggttttttaatacagtggagtactactgaaTT-TTGCAAACactgttaaatgaatgaaat

a score=35212
s chr3           17386516 2555 + 160039680 AAGGGAGACATAACAACAGA--TCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCA-AAAAAAGCCC---AGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAA-AACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAA--TACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaa-ggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgacc----ctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaaga--aattaaagaaga------------------------tctcagaagatgg--aaagatctcccatgct--catggattggcaggaccaacattgtaaaaatggctatcttgccaaaagc----aatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaa--ttcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggat----aaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatg---gtcacttgatcttcgacaagggagcca--aaaccatccagtggaagaaagacagcattttcaacaattggtgctg-gcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtg----gggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaac----agcaa----------------------------------------------tggcttg--------------tgctgtaagatcgagaattgac----------------------------aaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttac---ctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgt-ggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaa-ccactctggaaatcagtctggcggttcctcagaaaattggacatag-tactaccggaggatccagcaatacctctcctgggcatatatccagaagaa------gcccca-actggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatgga
s HiC_scaffold_1 77102857 2498 - 233722169 aatagaaaaattacaaaagacataccactgaaattcagaaaattattagaaactattttgaaaaattgtATTCCAATAACTTGAACAATCTAGA-GAAATAAATAATGACCTG---------------CCAAATTTgaaccagta--gacataaagacaTAAACATATTAATAACAAGCAATGAGACTGAAGCACCAGTAAAG-----CTCAGCCATAAAAGAGACCTGTAGGACCTGCTGGATTTTCTGTTAAATG-TACTAGACCTTGAGAGAA----TAAAACTAGCACAATA-AAACTTTTTC---------------------------CAAATTTGTTACACAAAATCAGCATTGTCCTGATACCAAAACAGAATGAGGAcctagcaaaaagaaaaagatatgggTCAAAATATTCAGTGAACATAAATGTCAAAATC---------ACTCATGCAAAGATGATTCAGTAACACATTTAAGAAGTCACCA----TAACTAAGTTGATTTCTTCCCAGGGGTTCAGTCATGGTTCcttatatgcaaatcaataaatgta-----ccacataaatagaatcaaggataagtaaaagcaaaattctcTCAATATATGTAGAAAAGGC-CTCAGTAAAATccaacatcctttcatgataagataCCTAGAGAAA--ATGCATACAGAATGAGCTTCCCTCAAATTGATAAAAGCCAATTG--ACAAACCAATACCCAACATCATACTGAAGAGAGAAAAATTGAGAGCATTTCTTCTAAAACCAAGAATGAGACAAGGTTGTTTGTTTTCACTACTTCTGTTT-ATGTAATACTTGCAACTTCAGCCAGCTCAATCAGacaagaaaacataagtaaaaGGGACacacataggaaaggaagaagtccaGTTATGGC-TATTGCGGATAATGTGATCCTTCACAtagaagattaaagaaaaaaaatccatcagaTGATTTTTAGATctgataagcaaattcagcaaagAGATAgggta-aaaattaa-gaataaaaatcaacagCAATCATGTGCACCAATAATGAATCCACCCAAGGTGATATCatgaaaataattacattcataagatc---------tttaaaaattaccAGTAT-------ATACAGGAATTGAAAGACTTCTATAGTAGGA----CAGGTGAAGGGGGAAAGGGTAGTTGGGAAAGGGACATAATGTATACTATTAGTATCTCTTAGTTCATGAGTAAAGATGGTTcatgctaatattgattgaaa-----aaaattttatgcaCATATCATGTACCTTAAGCAACTAATTTAAAGATTACGTGTAAT--ATATTAa-----caatt--attttcctattattttg----------ttacaaaattttatttgatgt---------------tttccATAAAcatatcttaaaaattttaaaaagaa----------aattacagaacactgaagaaagttt---aaaaagacaa-------aacagtatCATGGTaacagcagaaaaacagacccatgaaataatgaaatataacaGAAGATATATGAACAAACTCAGA-----ATGAAAGCCATTGGGTTTTTGACAAAGCGACGATGAACTTACTTCATGTAag-------gcctctttaacaaatggttctGAGAAAAATTGGATATTAT-ATGCAGAATATTGAAATTAGAGCCATTTTTTCAgcct--tattaaaattaaata-aagtagaTCAAAGACCCCTGTATCAGACCAGACACTTTGACCCT--------GGAAAGTATTATAGgcaaatattcaaagtcacagaCGTGAACAAACAA--CCTGAATGGAACCTTAAGcaactaataataaaaaataatatcaaaaacaaaTGGATGGGCCAGGGATTAGCTCAGAGGTACAAGGGCCTGCTgggcaagcaagaggtcatgagttagattacCAGTACCCCTCCCCCAAAATGGAATTACATTGAGTTAAAAAACTCTTTCACAGCAAAGGAGACAATGAATAC-ATAAAGAGACAGCCCATAAAATGGGAGAAAACCTTTACTAGTTATGCT--TTCTGCTGGAGGGTTAATATCTGGATTGTATaagaaactaacaaa----aacttttaaaaagcaaatagcaCAATCATAAATT----------ATCATACAAATAGATTTCA---AAAGAGTA-CAAATATTCAATATGTGTTT-AAAAAGTGTTGAATATCTTTAGACAATATGGACATGCAAATAAAATCTACTTTGAAGTTCCATTTTACTCTAGTCAGAATAGTTATCATCAagcattcaaaagaaaaataacactagGCAGGGTGTAGGGGTAGAAGGAACCCTCCTACATAATTGACAGGaatgtaaatttatataattcactatggaaatcaaaatGCAGATTTTGCAAAACACTGAAAGCAGAAAatatcatttgatccagc--taccACTGCATGGTGCATTCCCTGAAGAATTAGGGACAGCATACTACaatgaaacacacacactc----atgtttataacagcataattaACAATAGGTAAGCTGTGGAAATAGCCTAGATGCccctcaacag----atgaataaagaaaatgtgacatatatacacaatggaatattattcag------aggAGAACCTAATcagattatttaaaagaaaatggatgGA

a score=15049
s chr3           17386580 1166 + 160039680 TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCA--AAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAAT----AGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCT-ATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAA-----GTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACAT-TAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAAT----CCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCA-ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCC------ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaa--------tatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaa-gatctcagaagatggaaagatctcccatgctcatgg
s HiC_scaffold_1 87738674 1079 - 233722169 tatactcAC--AAATTTGACAACATTGAGGAAATGGACTGATTTCT---TAAAGACCAAGAAGCATCAAACTCAACCAAGATGAAATAAAC-----------------ACCCattaagtaaattaaa-----ttttaattttaaagctcTTGAAGAGGAAATATCTAGACTCGGGAGGTTTCACTGGAAAATTCTTATTAAACTTTTAAGGAAGAATTAACATCAATTTTACACAGTCTAATCCAGAAAATATAACAGCTGTAAA----------CACAGTTCAACTCATGAGACTAATATCGCATCATTACCAAAACCAGGCATAGA----------------AACTGTAGACCAATGTCTCTCATGAATAT------AAAAAtcctcaa--atattttt-caaaagaaacccAATGATATGCACAAAACATTTGTATATCATGACCAAGAAGTGTTGGTTACTGGTATGGAAGACtggttaaatatttgaaaattaatctGTCCATGTTATTGAGCATGGCAACACACTTAAA-----AAATCACACAATGATATCACCTGGTACAGAGAAAGCATTTAACAAAATCTTACATGCATTTATGATAGAAacacc-------------------------tttttaaaaactatgaaagAACATATTCAAAAATCCTAAAACTAGCTTGATATTTAATTATGAAAAACT-----CAATCGCTTCTTTTTTATGACCAGGAACAAAGTACAAATGTGTGCTCCTACCagtcttattcaacatagtactacGAGTTCTAGTTATtgtaataagatttttaaaaagtgtaagactgagacta-----agaaaaataaGTACAACTATATTAATCTCAAGATGACA----AAAGTGTGTAAGAGATATCAAGAAACATGAAATAG---TCATAAAAGGTAGAACTGAATTCAGTTCAT----------CAAGGTCAATATTCACAAATCAATAACCTTCTTGTATACTAACAAGGAACATg-tggaaaccaaaataaaaacacagtatCATTCATAATCactccaaagaaaatgaaacacttaggtaTTCAGGCATAAACCTAACTAATCATGTAGAGAAGCTATGCTCTAGAATCTACAAAATGCTGACAAAAGAAATGTGAGAGTAATTTAAGCAAATGAAGATTTATATTGTGTTCATAG

a score=68239
s chr3            17386580 2530 + 160039680 TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG-ACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagcca-caaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgt-aaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactgg-ttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctt--tacctatcctaaatcagataggggactaatatccaacatatataaaga------actcaagaaggtggacctcagaaaatcaaa----taacccccttaaaaaatggggctcagaactgaacaaagaattctcacctg----aggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggagg----atccagcaatacctctcctgggcatatatccagaaga---------agccccaactggtaagaaggacacatgc---tccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcaca
s HiC_scaffold_1 177567022 2468 - 233722169 tgtattctaataatatggaaaatgtggaagaaatggaca--------------tatgATTTAAAAAGTTTGAATCAACacaatataaaaatcctaaagaaaacagtatcagtcaataaaattcaagatgcaattaaaaacttatcaacagtTAAAAGCATAGGATCTGAAGAATTCACTGCTGAGTTATCCAAAAAAATTACTGGAGAATTAATACTCCCACTTCTCAAACACTTTAATAAACTTAAAGTGGGGGCAACACTcacaaaatcattcctggaagttTTCATATCCctgatacccaaaccagagaaggacccatcCCAGAAAGAGAAATTCAGGCCAATTTCACCCATGAATACAGATGTAAGAATTCTCAGTGAGACACTTGCAAACATAATGCAATAAATCATTAGgtagattatatatcatgacccaATAGAATTCATCCAAGGGATACAGAAATGCTTCCACATATAAAAATCTATATATGTAAATACCCATATTAATATaaccaaggaaaaaaaaacaaatgatcatgccaatagatgtagaaaaaacatttgatgaagtccaacagcaatgaaaaataaatatcctaCAGAACATTGGAATACAtgacctttatctcaatctgataaaagccatctataacaaaccaacagcaaacatcatgctaaatggactaaagctaaaagctttcactctaaaatcaagtaCAAGACAAGGttatccactgtctccactcttatttatCCTAGtcctggaaacactagccagataaattagacaagagaaataaatgaaaggagtaaagat------agaagaagttaaactatcattatttgtagatgacatgatcctctatatATAGTACTCCcaaaatttcatcaaaagacttccagatttaataactaaatttagtTGTATAGCTGGATAAAATGTCAGCACAaa-aaatcaatagtcttcctatacatgaataacaaactcactgagagaaatattaGGGAAACAATAGCCTTCACAAtggcaatcaaaca--atgagatacctagaaatcaatctaataaaggaagtaaaagacctctacactggAAATCTCAGG-acttgaaaaaggagattgaagagggtatcagaaaatggaaaaatattccttcttcttggataggaagaactaaaatagtgaaaaacggccatacttccaaaattg--ctatcgatttaatgcaatctcaatcaagaTCCCAACAgtatatcttacagaattagagaa---aattttgttattcatttggaaccagaagagacctagaatagcaaaggtaat--tcaaCAGTGGGAAGGcc----agggcatcacaatcctggacttgaAATCATATTAtgaaactactgtgataaaaacagaatgccactgg-ggaaaaaaagacctgaggataaACGgaacaaa----aagatac---aacaacTCCAGACTTACTTAACAaccttatttttgacaatgaTGCCAAACACCTTTACTAGAAGAAagccagtctctttaataaatgttgctggaaaacctggcttgcCAT-ATGTTAAAGATTAAAACTAGGTCCATAGCATTCAttgtacactaaactaaaatcaaaatggatcaa-gatctaaatattaaaacagaaataccaaatctgttgaaagacagaataggtagaacACTTGAAGAAATTGGTGTAGGCACAGCctctatgaacaaaaccccaattgcataGGTACTATCTCAAGGAATCagcaactaggatctcatctta--taaaagcttttacacagcaagagaagATACCAATggaatgaagagacaactcacacaGTGAGAGAAAATTTTGCCATCTGTTCC-------ACAAAAGGTTACTGTGAAGACTATACAAAGAATACCCACACAAAAAATCaaaccccccaaatttaaagttGTGA-----ttcaaaaatgagtatctgaaatgaacagatacttatCAGATAAAGTAGAAATaccaaa--------aataatatgaaaatatgttcaacatcattggtcactcaatacatgcaaattaaa--aacactgagattctgtctcaccctCAAAGGGattgctattatcaagaaatcaaccaataacaaatgctggcagaggggtgg-gaaaaaggaaatcttctccactgttagtgggatggtagactggtgcaaccacagtggaaatcagtgtggagatttc-----------aaAACACTAAGACTGGAGGTTACATTCAGCtat---tcttcttggtatcttctcaaaaaaattaaaagcatcctaTCCTAgta------atacatgcatatccat--tgcttatagcagcacagtttgtaataac--aatcttgaaaacagcccaaacaTCCGCCAGTTGATGATTAGCTAAAGAAGATGTGGattattttttcactgaaatactATT---CTATCATAAAGGAC-AACTTgggacatttctagctaaatggctGCACCTTGAGGACATACTCTTaagggaaataaaccagacaca

a score=14030
s chr3            17386580 737 + 160039680 TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGA--CAGATACCAGGTACCAAAGTTGAATCAGGATCA---AGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAA----------AGAT-CCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT-----AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTT
s HiC_scaffold_1 155722854 709 - 233722169 TGTACCAAATTTATTTGGATAACCTAAATGAAATGGACAAACTCTTAGAAACAGAAAGCAG--ACCAAGAGTAACTCACAAACAGAAAATCGAGCATATGTTTAGTCT-------------------GAATCAGCAAACAAAAG---------CTAACAAAGTCCTGGATCTCTCGGTTTCATTAGTTAATTCTACTAACTATCCAAAGGACAT---------GTTCT---CAAACTTTCTCA-AAAACTGAAGAAGAAGGAACACTTTCTAACCCATTCTGTGAGGATAACATTAACCTGACCCCAAAACCAAACAACTACTACTATAGGTATCAGGATATGAAGAAAGCTCTGTATCAATATTCTTTACAAAAATTCACTTAAAAagtctcaacaaaatactagtaAACCAAGCTCATCAGCTTATTAAAAGGATTATAAAGCACACCTAGGTAGGTTTTTTTCCTGGAATGGAAAGATGGTTTGGGATATGAAAAATTATCAGTATGATACGCCATATAAAAA----TGAAGCTTTAAAATGTATGACCATCTCAACTGATGCAGAAAATGTATTTGACAAAGTTCAAAGccttttcatgattaaaaaaaaacactcaaaaaactagaattagaagagaactatctcaaaataat-aaggCCACGTATGAAAACTCCACAGAAAATGTTATACTTGGTGATGA-AGATTCATAGCTTTTTCTCTAAGACTAAAAACAAGGCAAAGATGTCCACTT

a score=14391
s chr3            17386592 1309 + 160039680 AACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGT----TGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACT-----CCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATC----CAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA-TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAG-------GCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaattt-----gcaaattcatctggaataacaaaaaaccgaggatagcaaa
s HiC_scaffold_1 126531075 1214 - 233722169 AACTTgacaatttaaatgaaataagcaaatTTCTTGAAAGACACAAATTACCAAAGTGTACCGAAAAAGAAAcaggt----------------------------aaagaaaaata------tatctatatt-----agCCAAATA-----------------GCTTTACTGTTTCGATATACCAATCAACTAAATAAGAAGTTAGTATATATCAAATCTACACAAATTCTTCTAGAAAAttgaaa-aggataaaatatatCCCATATATTTCATTAGGCTGGCCTTACTCTGATATTAAGACTAGAAAAATGCACTTCAAGGAGAGAAGACTACAGACAAGTATCTCTCATGAACATAATTGAAAAAATTCTACTTGAAATTT------ATCAAATCAGATCAATAAGAGGCAAAGAGAATAATGTGTCATGAGTAATTATGGCTTGTCTTGTGAGTACAAAGTAGATTTAACA-ATGTGAACCAATCAC--TAATACATTATA-----AggctaaaaatgaaaaaccatgTGACAATctcaatatatataaaaaaagcaTTTCATAAAATCTAGCCTCTATTCCTGATTCAAACTTCTCAGCAAACCAAG---TGAAGGGAACTTCAACAAGttgataaaaatcattttc--ccAACACACAGTTAACAT-------AATCGTGAAAGACTGAACACTTTTCTCTTACGATT-GAGAAAAGACCAATAGATCTACTCATCATTTTCTGTCTATATTTT-ATTAGAGGTCTTGCACAATAAATAAG--------GCTAGAAACAGTAGGAAAGAGCCATCCAGACTAGAAAGCAAGAAGTGAAATTGTCTTgtttcacagatgacatgattatttatgtagaaaatcctatgtaatgaaaaaaa-------tagaatacattagTGGGTTTTACAAGGTGGAAACATGAAAACTCTATATACAATAATCAATA---TTTCCATATACTGGAAATGAATTGCAggaaattaaaatactaaaaaattcaTAGTTTACAATAGCATCACGAAATATAG-----TTTGCTATCAACTTTACAA---AAATGTGAGACTTGTACACTTGAAACTATAAAACATTAGTGAGAAGTTGTACACTAGACTTAAGTAAACAGAGAAGTATACCATATTCGTAAGTTTGCACAcacaatattgttaaaatgctAGTTTTCCCAGA--------ATGGTTTGAACACAATTTCAATCAAAAATCTCACcaggctttaaaaaaaact--gatgaGTTATATATGAAGCAAATATCGATGGAAAGCTAAAAGAACTAGGAaggtaaa

a score=11616
s chr3            17386604 541 + 160039680 TGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCC--------CAGCCAAAA---AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAG-ATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCG---TTAGATGCAGAAAAAGCATTTGA
s HiC_scaffold_1 198166622 527 - 233722169 TAGATGAAAT----AAATTCCTGAA-ACACAAAACCTACCAAgactaaattttaaagaa-tagaatatttaaataGACCAATAATAAGTAAGGACATTGAATCAGTAATTTTAAATCTCCAGACAAATCAGTCAAAATTTCTTGGCAAACACCAGATGACTTCCCTGGTAAATTCTgccaaacatttaaataaa---tatctcCAAATTATTTCAAACTTTTCCAAAAACACTGACCAGGAAGGAACACTTCTTTACTCACTCCATGAGGCCAGCGTTACCCTAACACCAAAGCCAAAGAC---TCCAA-----------AACCAGAGACCAAAG-CTTTTATGGAAGTTGATGCAAAAATGCCCAACAAAATGTTAGCAAGTTGAGTTCAGCCATGCAGTACAAGGCTCACCCATTATGGCTAAGTGGCATTTACTGGTGGAATGTAGGGGTGGTTTGACATACAAAACTCAATCGATGTAACACAGCATACTAGCAGTATGAAGGAGGAGA-----GTGATCATCTCATTTTttgatgcagaaaaatcatttga

a score=13629
s chr3            17386610 685 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAAT-CAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAA---GCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAA-GCCACTATTACTCTGATACCTAAACCACAGAAAGATCCA---------------ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAA------TAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA----TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCA-ATCCCACTAAAATCAGG
s HiC_scaffold_1 131360117 685 - 233722169 AAATGGATGTGTTTCCTGAGAGATACAAGCTACCAAAactcactgaagaaaaaaatagataatttgaATAGCACTGTGTGT--TAAAGAAATTGAATGTGCAGTTA--AAAACTTTCCCAAA-ATGAAAAATCTAGACCCCGAAGGCTTCATTAGTGAATTATACCATACATTTAA-GAGGAAATAACACCAATTCTACACAAATACCTCCAGAGCATTGAAGAAGAGATAATACTTCCAATCTCATTTTATTCGTACCTGCATTATCCTGATAACAAAATCAGACAAAGACatagggggagagagagagacagagagagagagcatatAACCAACCACT-----AAACATGAATG---AAAtgcttaaaagttttaaaatttat---------atctatGA-CATATTAAAAGGATGATAAATTGTGACCTA-TGGTATTTTTCCCACATATGCAAGTTTGACTTGAAATGTGAAAACCAAACAATGTGATTCACCGTATCAATAGACTAAAAGAGAAAACCCACATGATCATCCAAATAGATGTAGAAATCGCATTAAACAAAATCTGACATCTATTCTGGATAtgtaaagaaaatcaataaattagGAAG--AAAACAATTTCTTAAACCTGATAAGAAACATCTTTGAAAAAAT----GCTAATATCATACTTACTGGTAATAGACCAAATATATTTTCCCCTAATGTCAGG

a score=26587
s chr3           17386620 2497 + 160039680 ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAG--AAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTA----GAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCA--GACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGT------------------------------------------AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATC-CAACACCCATTCATGATAAAAGTTCTGGAA----------------------------------------------------------------------------------------------------AGATCAG---------------GAATTCAAGGCCAAT---------------------------------------------------------------------------------------------------------------------------------------------------------ACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgt-----------------------------------------------------------------------------------------aaaaatggctatc----ttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaa-----------tttgcaaattcatctggaa-------------taacaaaaaaccgagg---------atagcaaaaactcttct---caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagg----------agaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaa---gtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatca-gataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac---cgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccag---------------------tgagaatggctaag---------------atcaaaaattcaggtgacagcagatgctggcg--------------------------------------------------------------------aggat--gtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatc-cagaagaagccccaactg--------gtaagaaggacacatgctcca--ctatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtgg--tacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaac
s HiC_scaffold_1 66219401 2910 - 233722169 ATTTTTAGAAACATACACCCTACAAAGACTGAATCAGGG---AGTAGAAAATCTGAACTGTCTAATAATAAGTAAGATTGAACTGAA-CAGTAATAAAAAGTTTCCCATCAGTGAAAGGCCCGGAACTTG--TGACTTTATTCTTTACCCTACTAAACATTTAAAGAAG------TACCACTTCTTCTTAAAATCTtccaaaaaagataattaaagagAGGATACT-TAACAAGTATATTTTATATGAGCAATATCACCCC-ATACAAAAACCATCTAAGAACACTACAAAAA-AGAATACTGTATAAAACCGTGTCTCtgatgagcatagatgcaaaactt-TTGCCAGAATACTACCAAACTAAATTTAGCAgcataataaaaataccattcacTGAGAACAGGTGGGATTTATCCCTGAGATGCAAGGATTTATCCCTGAGATGCAAGGATTTATCCctgagatgcaaggatggttcagtaTACATAAATCAACAAATATGATACTCTATATTCACAAAATTAAGGACAAAAACCTATATATCATCTGAATAGATGTGGAAAAAGAATATGACAAAATCTTAACATCTTTTCTTGGTGAAGAGTCCAAAAAATTGCATGTATAAAGAATGTACCTCATGCTGGGTATGATAGTatacacttgcaatcctagcacttaggagagtgaggcaggataatcattgcgagtttgaaatcagcctggactacaaagtgaactcaagtccagcctaaactgatTACtggttagtgatttttttttgtctcaaaaagacaaaaaaaaaatagaggatttagctcagcggtgtgaagtgcctgcctggtaagtgcaaggtcgtgagtttaatccccagtacctaaaaacaaaacaaaacaaaacaacaacctgAACACCATAAAGGCTGTATATGACAAATGCATAACTGATACC--AGTTAATGGGGAAAAGTTGAaagcttttctttcatgatcagtaAT---ACAA---TATCTGATCCCATCAGTCACGTTGCCCATAGTG-TTGAAGGCTTAAT--GTGCAgtgaggcaagaaaaagaaataataggcagcta------aaaacaagaaatgaa------actgTCTGCTGAGgacattatattatata----------tgaaaacTC-------AATCtattaaaattgataaa----tttagtAAAGTTAAAGGATACAAA--CAGTACAA--AAATTAATACCTTTTCTATACATTGACAGGAAA----TTCTGAAAAAGATTAAGAGCACTTTAATTTACTGTAATCTcacaagaaatattaaattt------------------aaggAGGTAAAAAATCTGTATACTAAATATTATAAACTATTGATTAAATAAATTggggaagataaaaataaatggaaagatatctcatGCTAATGGACTGGAAGAATTAATGTTGCAGACCTagggactgaggatgtagctcagtgacacaagtccctgcccggcaagtgcaaggtcctgagtttaattcccagtatataaaaaaaaaaaagactattcaGACTACTCAAAGCAGATTACAAATTCAATGTAATCATTGTCAAAGTTCTA----AATTTTTTTGC-----AGGCagagaaaatatctgaaattttaaaactttgtttagAAAATATCCTAAAATTGATATGAAACTGTAGAGATCTTGCATAAGTAAAGTGGTTTTGAGCAAAAGTAACAAAA---CTGGAGGTATCATACTCCCTGATTTCAATATACTTTACAAAGGTGTTATAATCAAAAC----------------ATTGATTGACA--TTGGCCAGTGGGACAGGATAGAAAACCTAGAAATAAACCCA-GTGTTTATGACCAGGTGGcttttgacaaaggtgtcaaga-CACACAGTGGGGAAAGGATa-ctttttcaataaatgatgctgcTAGAACTGACTATCTGCATATATAAGAATGC-ATTGGATCCTTATTTCACatcacatacaaaaatcaatacaaaatatattatgaactTACACAGAAAACCTGAAACTATGAAattactaaaagaaaagaaaaaagaaggagggGGAACTCCATAGTAAT---GGCCTACAAAATTATTTTGTGCATAGATCC-CAAAAGCAAAGGCAGTAAAAGCAAGAATAAGTGAATGATATTGCATCAAACTAAAAGCCTTTCTCTGCGTAGCAAAGAa----agcaacagaatgaagagacagcc-aCAGAGTGG--AAGAATTATTTGCAA--CAATATCACTAAAATGGGCTAATACTCAAAATATGTAAGTTGCTC-AGTAGCTAGA------------AAATATGTGATTTAAAAAGTGGGCAAATGACCTGAACTGACATTTTTTA---GAAGAACACGTACAAGTGACCAACAGATAac-gaaaagatgctcaacatttctaaacatcagagaaatgcaaattaaaattgtaATAAGATATTACCTCATGACTGCTATTCCTTTTATTAGAAAGACGAAAGTAGCCAGGTGGATGCTGGTGGATACCTAGAGAAGCGGTGACTCAGGAAGCTAGAGccaggaaatttaaaaccaaCTTGGGCAACAGAGTGAGACCCCATttcagaacaacaaaaaaatgtgaaaagataaGTGGAGAAATTGAgactcttttgcactgttggtgggaatgtaaaatgttgCAGCTTTTATGGAAaacagtgtgaagattcctccaaaattaaaaacaagaattagCATTTGATCCAGTTGTCTCACTACTAGATATATATCTCAGGAAGGG----AATTGAAATCAATATGTGATGGATATATCTACCATCCCACGTTCATTGAAGCATTATTCGCAGTAGCAAGATAC-GGAAACAGTTTAG-tg-ccatcagtggatgaatggaacAAGAAAAATCTGTCTGTATATATGCAGTGGAGTACAACACAGGTTTCAGAAGGAAAA----TATGTCATTTAAAAGAGCGTATATGAGCCTGGAG-GCATGATGTTAAGCCAGG---------CACAAAGAGAC

a score=21008
s chr3            17386692 1121 + 160039680 TAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTG--------CAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGA--TAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAG-AGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGA-TGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAA-------ACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAA-GCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT-TTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataa-aattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatcc
s HiC_scaffold_1 102385426 1276 - 233722169 taaaaatagaaaagaaaagaaaaaaatcctcccATCAAAGAATAGCCCTGGACTAGATGGCTTCATTATTTCACTACTGAGATCTTTCAAAC-TTGTACCAAGAACTAatatcatttctgcttttataaTTCCAAAAGAACTTGAAGAGGATGGACTTCTTCCCAACACATTCTATGAGGCCAGTATTACCCCAATATCAGAATCAGACAAGGACATAACGAAGAAAACAGAGCTGTGGATCAGTatctttaatgaacataaacCCAAAACTCCTTACCAAATTACTagcaaacaaaatccaacatcaaattaaaaaagagtATTCAAACTGgggatagtggtacacacctgtgccCATAATTCCAGCGTTCagagggctggggcaggaggattgttgtgagtttgagaccagcctgggctacaaagtgagtgcaaggcaaacctgaactgcatagcacaaCCCTgttgcaaaagaatgaaaaaaaattattcaccATGATCAAATGGGACTCATCTCAAAGATATAAAGAGcacttcaatatacataaatcaataagcgTGACATAATACACCACCATAAATAATAAC--AAACCTTATAATCATATGAATAAATGCAGAAAAGGcactttataaaatttaatatct-ttCATGATAAAAGATT-----AGATATAGAAT----GACCAAGTCTCAA--ATAATAAAGGTCATATGTAACAATAGCAAGAGCAATACCAAGCATCATACCGAATAGGGGAAAGctgacatttttttcctctgagatgTGGAATGAGACAAATTTGCTCACTTTCACCATTTTTTATTCAACATTGTACTAGAGGTAGCAGGTGGAGCAGTCAGGCAAGAAAAATATACTAAGAGCATCTAAAttggaaaa---gaagtcaaattgtCACTGCTTGCAGAAAACATGATCTTACATGTAGAAAATGCCCAAA--CCCACC--AAAACTACTAGAATTAATGAGTGAATTTAGCAAAGTTACATGATAGAACAATGAATGtgcaaaaatcaatatcattggTATATATTActaatgaat-ttttaaactaGAAGTCAAGAAAGCTATTCCATTTATAATAGCCATAAGTATTTT----TATACAGGGATAAATTTATCACAG---ATGAAAGATTTCTGtaatgaaaac--caaaatgttgatgagagaaacagaaaaagct-ggAAAATATGGAAAGCCATCCTGTGTTCCTGGGTGAGAAGAATCAATGTTGT--CAATGTCCTTACTACCCAAGGCAGCTTAGAGAGCTAATGAAACCC

a score=40978
s chr3            17386714 2411 + 160039680 AATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGT---TCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAA----GATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACA--GCAAACCAGTAGCCAACATCAAAGT-AAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaac-------agcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatgg----------------------------------------ctatcttgc-----------------------------------------------------------caaaagcaatctacagattca-----------------atgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtga-------taaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc-caaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaa--------aggatctttacctatcctaaatcagataggggactaatatc-------caacatata-----------taaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctcca--ttgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggta----agaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccag-atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaa
s HiC_scaffold_1 150617897 2437 - 233722169 AACAAGCTACCAACTTAGAAAATCCTAAGACTCAATGAATTCACTGCCAGTTTTTACAAGACTAT-GGGCTAGATGTAATGCCAATGCATCTg-----agtttttaatgaaattgaaagggaatgaATCCTCTCAAAATCATTCATTGAAGTAACCATCACCAttatttcaaaaccagatgacTACTCAACCAGAA--GGGAATTATAGGCCAGTGTCT----------TCAATGCAGAAaccctcaacaagatactggccaacagaatgcataaaatcatttaaa-aatcatatataatgATTAAGTAGTCTTTATTCTAGTGATGTAGGGATGTCTCAGCATGTGGAAATTAACAAGTGCAATCCATCTCAGAACCAGAACCAAGAACAAAAAATAGATTATCATCTTAGTGGACCCAGAAAAAGTCTTTGACATAATCCAAAATTTATttatgacaaaaattttaaaaaataggtttaATAAGCTTAGttcaatatt---------aaaaatcaatttatgaTGCTTACCA----CAATCATTATATTAAAAAGGGGAGAAGTTGAAAGATTTCCTTTTAACATCAAGa---agacaaggatattcac-taCAATATTCCTGATAAATAAAACACTCAAAACATTAGTTAGcacaat--aaagataaaaagaaaataaatatatgtgaatCAAAAAGG--------TAATTATTTTTACTCACAGATGATGTTATATTCTATATAGAATaccccaagatttctacca-aaAACTAccagaattaataactaaattcaaaattcagcagtgtagctggaaacAAAATCAACACATATTAG----------TTTGATACACAAATAATAAGcccaatgagaaagaaattaggaaagtaATACTATTTATAGTAGcatctataaaaattaaatacctaagaATTAACATAac-caggaagtgaaagacctctacagcaATAATTATAGTTCTcttaaaaaggatattgaagaacacataagaaaatggaaagatacctcaT--TTCTGGA-TAGCAGAaccaatataataaaaatggacatactggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcatgagttcgatccccggtaccgataaaaatgaaaaagaccaaaaaaaaaaaaaaaatggacacacTTAAAAAATATTAGTCATACACATAATCCCAGGCAAAATAGCAATAGCCTTCCCCCA-GGACTATAGAAAACAATCTA-GAATTCATATAAAGATATAAGAGAACTAGAGgagcaaaggaaattctgagcAACATGGgtaaggcaa-------gagaatcacaatgTCACACTTCAAGTTTCATTACAATGCTATAAACAGgacatttgaaaacagaatggttctggcaaataaataaataaataaacttacgGA----TATTCAGGA---GGAATAAAGTTTGCAGACACACAGCCATCTAATCATTGGCAAAGTGGTAAAAAAATATACACTAAAGGAAAGATAGCCTGATTAGCAAATAATTCTGGAAAACCTGGCTATCAACATACAGAAGAATGAGCTGAGGACCATATTTCTAACTAACCACTaaccaaaagtaaaaatggatccaa-------atgttaaaacagaaacacttaagaTGATTGAGGATAGAATTGGTAATACTATTGAAGACATAAGTGCTAGCATGAACTTTCTGAATTGAactccaattgcacaagaaataa-attaagaact---------------attaaattaaaaagcttctttacAGTGAAGGAAACTATCAATAGAATGGAA--ACTATCAATAGAACGGAAAGACAGTCTACCATTTTTTCCAGGCATTCCTTGGACAGAAGACTAATGTCTATTCTACAGCATgtaagagcaaaaacaaaacaaagcaaaaatacaagactcacaaA--TAGAAGACCACATCAAAGAATGGG-----CAATTGAATAGACACTGCTTACAAAAAGAATTGCAAATGACC------CACATTAAAAAGTGTTT----TCATTAATGACCATT----TGAAAGTTCAAACAACAGAAAGACTCCATCTCATTCTGCAAAGagtggttatcatcaagaaataagat-ATAACAAGTGGTGGTAGAGCTTTAGGAAAA----AACGCTCATctactttgttggtggaaatgtaag-taGTAAAACAATAggggaaattagtatggagattcctcagactactaaaactagaaatgtcag-----ctagaaattccatttctagttat-catcccaaaagagttaaagacattatattacagtgatacatgcactcCAATATTTAGTGCAGTACAACTCATGATAACTAAATCTTTGAGTGGCCCATGTAGGTCTATTAACAgtggaatggata-agaaaatgtgatatttacacaaaaTTTAGTATTATTCCGCtctaaagaaggatacatttaaATCCTTTTTATGAAAATGTATA--------------CATTCTGAAATAAATAATG----CACAAAAGATCccatgaaa

a score=9816
s chr3            17386722 447 + 160039680 CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT-GTAATCCATTATATAAAC-AAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT
s HiC_scaffold_1 222209385 430 - 233722169 CTTAACCAAGAGAACCCAAAAA---------TTCACTACTGAATT-TATCAGCAATTTAG-GAATAAGTAAACTCAATACTCCTCAAAGTCTGCCAGAAAATTGCAAGGGAAGAAATACTACCAACCACATTCATCAGAGACAA-GTTACCATGATACCAAAACTGGAAaaggactcaaccaaaa----aaacTACAAATCAGCATTTTTACTGAATCTGGATACACAAATTCTCAACGGAATACTTGGAAGCAGGATGCAGCAAACCATTCAAAAGGTCATACATCTTGACCAAGTCAGCCTTGTCCTACATATGTAAGAATGACACAatatacataaaacaataaataaaaaaatattacatacatGAAATgtaaggataaaaatcacatagTCACCTCAATAAATGTGGAACAAA-ACTTGAC--TATTCAACATACattcaggat

a score=5659
s chr3           17386722 224 + 160039680 CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATG
s HiC_scaffold_1  1869309 213 - 233722169 CCCAAACATCAACACCACAGACTCAGACAGTTTTATAGACAACTTTTATGAAGGTTTCAAGGAACACAAAAGCCCTGTCTTACACAAACTGTTCCAAAGAATAGTAACAGAAGGAATTCTCCCAACCTCGTTTTATGAGGCTAGGATGACCTCGATTCC-----------AGTACGCCACCACCATGGAAAACCATAGACAGATTTCACTCGTTAGCACAGACG

a score=12086
s chr3            17386723 461 + 160039680 CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCA--------GAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCAC-TATTACTCTGATACCTAAACCACAGAAAGATCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAA--------------------------------------------------------TCCATTATATAAACA-AACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAG
s HiC_scaffold_1 109410552 519 - 233722169 CCAACCAAGGAAAGC--AGGAACTGGGGTTCCTGCTGCATTACCATTGAATTTTATAAGATAGTCAGTGGTGTTTAAATGGCAGTAATCCTGAATCCATTTAATGAATTAAAAGAGGA--GTATTT--CCAATCTCATTCATGGAAGCTAAACATTACtttgatttcaaaaccagacaaggattcAAGTAAAAAAAGTGAATTATAGACCAATTTCTTTAATCAACATGAAgtgaaaaatcctcaataagatactgactGATATAAC---AAGATATATCAAGAAGATCACACATCTTGACCAAGTTGGATTTATTCCACAGATGCAAGAGTGGCTAAATATTCAGAAATCAGTCAATATAACAAAAATTGCTTTTAGCTCTTTTGGATAAAATCAAGTGATGTAACAGTAAATGTGCTACATCACATAAGCAGAAATCAGAATGAAAAATCACACAATTATCCCTTTAAATACAGAGAAACCCTTtcacaaaatccaacattcattaaTGTTGAAACCTAAAGAAAG

a score=17239
s chr3           17386732 1189 + 160039680 AAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAAT--TTCT-CTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAAT---CATCCA------------TCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAA-GCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttct----caaggataaaa
s HiC_scaffold_1 74183501 1154 - 233722169 AAATCCCCAAGCTCAGTTAATTTTCCTGAagaattctaccaaacatttaatGAAGAACTAACTCACGTTCAACACAATTTCTTccataaagtaaaacaaataagaacacT-TCAAATGTATTTTGTGAAGCTAGTGTTACTTTCCTAACAAAACCAAAG-----CTGTACAAAAA-AGAAGACTATAGACAAATAGTGCTGCTTATTTATACAAATGTCAAATTCCTTAA-AATGTATTAGTAGATAGAACTTAGCAATGTATTAAATGACTGTacaccaagtaggatttatttcaAGACCAAGCAGGATTTATTTCAGACATACAAGGCTTATTTAATAATCAAAAATCGATCAGTGTAATCTACCATTTTAACGggtt--aagggaaaaataatgtGCTTATGT-----GAGGCAGAAAAAGGCATTTGAAGAAATCCATTACCCATTCATTAAAACA---CTGAGGAAAACAGGAATAGATGGGAAAGTCCTCAGCTTGACAAAGAC-TTCTACAGGAAACCTGCTGCTAACATTGTGCTTAACAGTGAAAGACTG-----AGTTTCCTCGAAGACTGGGA--AAACCAGGATGTTTGCTCCATTATT-CTTATTCAGCACAGGGCTGGATTAATGCTTCAGTATaat-----aataaaacaagac------------aatcagaagtacagaaagaaaactgaCGCTGGTTTTAGATGACATAATTGTTTATATAGAAAACCCCAAGCAATCTACCA-AAAACTGCTGGAACTAATAAGTGTGTTCAGCAGAGT--CAGGTCACAGGGCAAAGT---AGGGACGAATCTCACTTCTGTGTACTAGCAATGGCCACGTggacaccaaaaattaaaatgcaagccATTCAAAAAttgctcaaaaca--aaaaaatacttcgGTA-GAATCTAACAGGAGATATACAGGGTTTATGTG-TGTCAGGTATAACATGCTGAAGAAAGCAATCAACGAC-ATCTAAATAAGTAAGGGAATAGGCCGTGTTCATATTTCAGAAGACGGAACATAATAAAGGTGTAAATTCACCTCAAATTGaaatacaggtttaatgcaattttTATCTTAATCCCCAAAAGATTTTTTCTAGATatagacaaaaaatttt---aaattatatccaaagactaaaaaactaaaatagtttaaatttttttgtgaaaaaaataaaa

a score=16612
s chr3           17386733 517 + 160039680 AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAAT-CATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT
s HiC_scaffold_1 80208903 499 - 233722169 AAAGCTCAGGATCCAGAGAATTCACAGCTGAATATTACAGCACCTTCAGGGCAAAACTAATGTCAATATTCTTCAAATCCTTTCATGAAATTAAAAGTGAAGG-ACACTGCCAAGCACATTCCTTGAAGCtaacattaccctgataccaaaaccagacaacggctcagcaaaaa-agaaaacttcagatcaatttccttaatgaacatacatgcaaatatcctcaataagatact-gcaaacaaaattcaacaacTTATTGAGAAGATATATGAAT---AGCTAAGTCAACTTCATCCCAGAGATATAAAGATGGCTCAATatagataaatcaataaatgtaataaatcacataaataagat--------aaaatcacATGATTAGCTC-----ATGCAGAAAAATTCTTTGACAAAACCTAATATCCACTTATGATAAAAACTTTGATGAAGATAAGTATAGAAAGATCTTATCTAAAATAGATAAAATCCACTTATGACACACCAATTACCAACAT

a score=4246
s chr3            17386750 154 + 160039680 GGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCA-CTATTAC---------TCTGATACCTAAACCACAGAAAGATCCAACAA
s HiC_scaffold_1 134279657 161 - 233722169 GAGCTCACTGGTGATTTGTTTCAAACATTTGAGGAATACATCACAGCAATTTTCTCCAATTTCTTTCAGAAGACAGAAGTAGGGAGGATACTACCTAACTCATTCTAAGAGGACAGCTATCACAGTCACTTTCCTTACTGctagaaca---aaatatccaacaa

a score=66661
s chr3            17386761 2339 + 160039680 AGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACC-GAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAA-AAAGCATTTGACAAGATCCAACACCCATTCATGAT----------AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatgga-----aagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaac-tcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagc--tttactacagagcaattgtgataaaaactgcatggtactggta------tagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactcc---aaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtgga----cctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatc-cttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtgg-agaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctggg-catatatccagaagaagccccaactggtaag-------------aaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaa
s HiC_scaffold_1 229303709 2244 - 233722169 aaaattctacagtaaGTTCAGGGAACCAATGCCACTGATTCT----AGACTCTTTAAACAAGCTGAAGGGGAATCAGTACTTCCAAAACCATTTCTGGAAGCAACTattat--------caaaaccagagaagaacccaaccaGCAAAGAAAACTGCATACCAATCTCCCTCATGAATATAGATATAAAACTCCTCAGTAACATACTGGCAAACCAAAAttcagcaaatcaccaa---gattatacaccatgaccaagtagaattcatcctagggatgcagggCAGGTTAAACGTatagaaaacaataaagataatacaccatattaacataaacaaagacaaaaatcataaggCTATCTTAATAGATGTAAAATAgtgcatttgacaaagtccaaca-ccattcatgattagaaaaaaaaaaaactccagaaaa--ctggaatagatggtctatatctcaatctaataaaaatcatctatgataaaccaacagtt------------------------cttga--ctttcactttaaaattagaaacaacacaaggatgtctactatcacaaTTCCTACTttatataattctggaaacatt----agagcaactagacaagagaaaga----aaaagaataagggtatgaaagaaagaagttaaattatcattatttgtggatgacatgatattctacatagaagaccccaaaatctctaCTAAATGACTCCTA-------------------GTAGTGTAGTTGAatataaagtcaacattcaaaattcAGTAGCATTACTGTACACAAGCGACAAACTCATTTAGAAAG-AATCAGGGAAACCATACCCTTTACAATagcttccaa-aaaatgaaatacttaggaatcagtctaacaaaggaagtaaaagatctatatgatgaaaattacactacatgaaaaaaggaaattgaagaggatatcagaaaatggaatgataagataccccttgctcatagatagggaTAACCAGCATagtaaaaatggtcatactcccaaaattgttgtacaaATTTAATGC-ATCCTAATCCAAATACCATTATTAAaaactcacagaactagagaaaac--------aatccattTGGAAATGgagaagacctagaatagcaaaagcaattctgggcaacaaaggcaaatcag--GGCATCACactccctgacttgaaatcatttac-----------tgtggtaaaatcagcatagtactgaaaaaaaagaaaaaacagatctgatggtcagtggaacagattagaagatgcaggtgCAACCTCAAACACACTCACCCActctatctttgacaaaggaaccaaa--cattctctggaagaaagatagtatctttaataaatgatgctggaataactggctttccacatgtcagaGACTAAAATTGggtccatgtctatcaccacgtactaaattaaagtcaaaatgaatcaaaaatataaaaattaaaacaggaatactaaatttattggaagagaaGATAgatagaaatattgaagacacaggtgtatgCAGAGACTTCTTGAACAAAACTCAGATTGCACGGGAAGTACTACAAAGAAtgaac---tgggatctcat----cttttaaaaagctgttgcacagcaaaagaaataacaaatacagtgaaaagacaacccacaggttgggaaaaaat-ttagccagttgTCCATCAAACA-AGGActtttatgtagaatatatacagaattgaaaaaatcagataccctacccaaattcaaagg--cccaatccaaaatgagcctctgagatgaatacaca--tctcatatgaagaaatacaaacagcaaataaatatatgaaaaaacatttgacaTCATTTTGTCATTAGAgacacacaaattaaaacaacactgagattccatctcacattagaaagaatggttatcatcaagaaatcaaccaataagaaatgctgcaAGGGATGTggtggaaaaagaaacccttctccactgttggcgggagtatggactggtgcagccactgtagaaatcagtatggagagtcatcaaaaagc------taggattacagg---------------ttccTTTGAACCAGGTATCCAGAGGAA----------TTAAGAATATCATATctcaatgatatatgtgcactcatgtttatagcagcacaatttgtattagctaaTTCTCGGAAATAACTCAAacgcccatcaaccaaagaatggataaaacagatgtggtatttttatacaatggagtattactcaggcAT---AAAAgacaaacttgagacatttataggtaaatggatacaactggagaCCCTActtatgaatgaaataa

a score=12480
s chr3            17386763 431 + 160039680 AGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTCATGATAAAAGTTCTGG------AAAGATCAGGAATT
s HiC_scaffold_1 218541252 420 - 233722169 AATCCTGCCAAACATATAAAGAAGAATTAATATCAATGCTTCACAAACCCCTTCCAAAAATAGgaataa----tatttt--ccattttatcctaTAAGATTGATATCACTTTGATAACAAAAGTAGACCAAAA--CATTACACaaaaaaaactacagaccaatatccctTGTAAATATGGATGTAAAATCCACTAA--ATATT-------AGCAAGTCCAGCAACATAACAAacagattatataccatgaccaacttAATTT-ATTCCAGAAACGCAAGGTTGGCTTAATATATGTGAATTAGTCATCATAACATACCCTATTTGTAGCATCAAAGACAGAAACCATACAATCATCTCCGTAGATTCAAACTAAGCATTTGACAAAAATCCAACTCCCTTTTGTGATAAAAACATTTGTCAACATAAGAATAGGAATT

a score=7545
s chr3            17386771 364 + 160039680 CAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATC-------CATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGT---TAGATGCAGAAA
s HiC_scaffold_1 190143545 328 - 233722169 CACACATTCAAGCAATAAATTACACCACTTTTATATAATCTATTACAGAAGATAGAGACAAAGAAGA--CTTCCTAACAGACTTTTTGG-GCTAATAGtgct----------------agaaa--------------agaaaagaacagactAATCTCTC--ATGAGTTTAGATGCAAGAGTCCTCCATAAAATACTAACAAACTGAATCCGACAGTGTATAACAAGAATTATATGTCATGGCCAAGTGGGCTTTATCCCAGGCATACGTAGTTGG-TTAATGTTTAAAAACCAGTTAGTGAAATCTGAGCATCATTATCAACACAAAC----------AAATCACTTGATCACATCAGGCATAGATGCTGAAA

a score=13195
s chr3           17386780 688 + 160039680 AAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAG----TAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACT--------TCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattc-------gacaacaaaaggagatcaaggggatacaaattggaaaag----aggaagtcaaaatatcactttttgcagatgatatgata--gtatatataagtgaccctaaaaatt
s HiC_scaffold_1 57489111 619 - 233722169 aaataaaagagaataccAGTTCTG---AAATTCTTGCAAAATAATGAAGAGTTTGGAAGATGT----CTGAACTCATTTTATAAGGCTAGTGTTAC----------AAGGTTGAAAATGACACTGCAAAAAAAGACAGCTATTTGTATTTCTATCAGTATTTCTAAGAAACATAGAtg--aaaatcctcaacaaaatatagGC-------ATTCAATAACACATGAAAAGGATCATCTTCCATGCTTAAGTAAGATTTATTCCTGGGATACAAGGTAGGTTT---------AAATTAATCAGTGTATTGTACCACATTCACAGAATAAATGATAAGA--------ATCATTTCAATAGGTacag-aaaagcatttgacaaagtacAATAGCTTTCCGTGTTTAAAA-ACTGAGCAAATTAGGTAGAGAAGGAATATACCTCAGTATAAGA---------TGCACCCACCT-----CTAATACCATACTCGATGGTAAGAAG--------------------ACCAGGAACAAGACAGAGATGCCTAGTTTTATTATTGCTattcaacatgatactggaagtCTTAGCTAAAGCAATTAAGGTAGGggcaaaaaaag----taaaagacattcAAATTGTAAAGGGAAAATGAAGTCA-----------TTTGCATATAAGGTgatcttgcatatatataagacCCTAAAAACT

a score=9378
s chr3            17386801 317 + 160039680 CTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAAC----AAAGATAGAGAACTT-------CAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCAT
s HiC_scaffold_1 125614813 328 - 233722169 ctcctcaaattcttcagtgaaactgaaagggatgGAATATTTCCAAACTCATTAATGGAATCCAGCATCACTCTAATACCAAAAACAGATAAAGACCgaaatataaaagatataaaatataaaaatacaagccAGTCTCCATAATGAACATTTATGCAAAATTCCTCTACAACATATTAGCAAAGAAAATGCTACACATCATCAAAGGGATAATACATTATTACCATTTAGGTTTCATTTCAGAGATGCAAAAGTGGGTCagtatacacaaataaataagttTAACACATCAAATACACTgaagaagagacaaaaaacatatgattat

a score=33257
s chr3           17386816 1444 + 160039680 CACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGG---------GATGCAGG--GATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctga-cctaaagctttactacagagcaattgtgataaaaa---ctgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagaca-----ctgaaacttatag
s HiC_scaffold_1 13164680 1317 - 233722169 cacagtttataagtAG----TATTCCA---AAGTAATTCCTAGAAACTAGCACTACTTTAATTCC-Aaaacagagaaagatccaactaaaaaagaga--tgtaagccaatctctttaatgaacatagatgcaaaaatccacaata-----ctggcaaaaagaaagcaacaaatcATCGAAG--ATCATACATAGTGATGAAGAAGATTCCATCCCAAACAGATGACAGATGTTGACAGATGGTTCAAcata-acaaatcaataaatagaatACATGAGATAATCAGAAGCAAGGATAAAT-TCACATGATCGTCTCAATGGCTG-AAAAAAAACCTTTAGCCGAACCAAACATCCATTTATGATACAAGCCCTGAAGCAAATAGGTATAGAAAGATATTATCCAAATCAGACAAAAGCCATATACAACACACCGTCTGCCAATATCATACCATAAGGAGGAAAACTGAACTCTTTTCCTTTAgcatcaggaacaaggcaaggctgtccactatcaccactcatgTTCAACACAATACTCAAAATGTTAGCCAAAACACccaagcaa------gaaataaaagtgatG-----TGTAGGAAagaaagtcaaattatta---tttgcaatAAATATGATCATCTACATAA--AAATCCAAAAACCCC--------ACTCAT-----TAATAACCACATTCAGCAATGTATCaagataaaaaa--------------tcaatagcattcctctacaccaATAGTCACGCCACcaagaaa-aaattaggaaaaca------ttaaCAATAGC----GTTAAAATTCAGT-TCTTGGAATTAatctaaccaagaaagtgaaagatcaTAACagtaaaaactacagtactctgaa----------aaagaagatcatggaaaatggaaatatatgccCTTTTCCTAGATAGGCAGaagcaataaaatcaaaatgggcatacttctaaaactgatatacagatttaatgcaattcccatcaaaataccaacagtacTTCTCATATAACTAGAGAAAGACATTC-------------------CTAAAATGCGAGA---------------------------------------GGCATTGCCATG--TGAGTTtcaatttatactacaaagctatagtgacaaaaaaagaagcaagctAGTAGGACAAAAACAGATACgtggatcagtgaaacagaataaaggatgcaAAAACAACCTCACACATATTCATCTAACTGATTTTTGACAACAGGGCCCAAAATATTAATTGGAGGAAACACA--AGCTCTAATAAATGATGTTGGTAAAATTGGCTACCCACATACAAAAGACCGAATCTAGGCTTATATCTCTCAACatttactaaagaaaaataaaaatgaatcacaaaTCAAAATGTTAGAACAGAAACAATCTTCTGGAATACatag

a score=37701
s chr3            17386819 2314 + 160039680 AAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTG--------ACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATC--CATCAAT--GTAATCCATTATATAAACAAACTCAAAGACAAAA-ACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaaca-------ggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatat---------------------------------------------ctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatgg-ctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaa-ttgtgataaaaactgcatggtactggtatagagacagacaagtggac---caatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaac-catccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacagg-ggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccat-tgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatc-cagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggat--acagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaatatgtact
s HiC_scaffold_1 191202968 2129 - 233722169 aaaatataaagggaAGGAATCTTTCCAAACTCATT----------------GCTCTGATACCAAAATTAGACAAGGACATAATTACAAC-GAGAA--TCAACCC-------CCAGTAAACATACATGCAAACATTTTCaacaaa-------tacaagaaaatcaacagcacattaaaa-----attcattttggatCCACAATTATATTGGATTTGTTCCAGG-ATGCAAAGATGGgtaaaaacacataaatatacataaatcaataatacATCACATCAGCAGTATGAAGAGTAAGAGATCAGAGGATCATCTAAC-AGGGGCAGAAAA-----CTGATAAAAGTCAGTATTATTGCATGGTAAAAACTCTGAGCAAATTAGCTATAGAAAG-----GTCT---CATAACAAAGGCTATCAATGACAAATCTATAGGCAACATCATAGCAAATGAGGAAGAGCTGAAAGTGTTTTCTCCAAGATCTGGAATGAGATGAGGGTACTCACTGTCAC-------TACTAGTATAGTACTGAGTGCTTCACCTAGAGCAactaggcaagagaaagaaataaaaggcatacacATGG-----AGGGAAGTCAAAG--------------------ATTCTTGTAT-CAAAAGTG--------------------------TTAGAACTGATAAATGAATTCAATGAAGTTACAAGATATAAAGTCAATATATACAAATCAGCA------TTTTAGATGGCTGAGAAATAACTTGATGGCTGAGAAAGTAATCGTGAAAGCAATCTCCTTCCCAAcagatgcaaaaaagaaaaaacacaagtgcgcgtgcgcacacacacacacacacacacacacacacacacacggaataaatttaaccaaggaaatgaaagccctctacaatgaaaaattttttaaactaataaaagaaattaaaga----cacaaaaatatgaaagagtTATCAtattcatggattggaagaattaatattgttaatgtGACCCATATTGCCCAAAGCAAtttacaaattcaatgcaatccccatcaaaataccaatgacattcttcactgaacaaaacagaacaattctAAAACTCGT----GAAAGAGAAGGCCCTGGGTGAGCTGAAGCAATCTCGAACAGAAAGAGCAAAGCCGGGTGTGGCTCAATATCTGATTTCAAG-----GCACAGAGCAAGCTGGGATCA--------------CGGCATaaacgcgcacacacacacaaacaatggaacagaatagcAT-CCCAGAAATGAACTCACACATCTGCAGTTCACTAATCCTT-ACAAAGCTGCCAAAGCACAT---GctgaagaaagacagcctcttcagtAAACAGAGCTGGGAAAATGGGATAT--CCATACCGAAAAGACTGAAAC--TCCTCAGGTCTCACTCTGTACACAGACAAACTCAAACTGGATCAAAGGCTTACCTGCAAGACCTGAAACTATGAAACTACTAAAAGAAAGCACAGGACAAATAATTCAAGACATTACTATAGACAGTGACTTTTTTGGAAATGATGTCAAAAACatagaaagcaaaagcaaatataGACTAATTGAATTGCATCAAATTAAAACACTT---CacagcaaagaagaaaatcagCAGAGTACAA--ACAACCTatagaataggagaaaatattccCC--------ATCCCATAAGGA--TAATAGCTAGGTTATATAAGTAAC----------------AAAAAACTTAAAGTAATCCAATTTAAAATGGACCAATGGTTcgaataaacacttctcaaaagaacaaaTACGCATGGCA-ATAAATTTATGCAAAAGTACTTG--ATCATTCGCCATCAAAGAAATGTAAATCGAAACTACCTTAAGATACATCCTTATCACAGTT-Ggatgattattataaaaa---taagt---agaaagtgttggtgaggatgtagAGAAAA------ACTCCCACACACATTGGTGGGA-TGTAAATTAGGATGCCCATTATAGAGAACAATACGGAATTTCCTCAGAAAGCTAAGGGTAGATCTCCCACAGCATCTCGGCTACACA-CTTCTAGGCATATCTCCAACAGGAATGCC------TAAG---------------------------------------ATAA------------GGAATCAACCCAGGTGCCCATccacaaatgaatggataaaaaaaaaatgtgctatgtgtagacaatggaatattacttagccactaagaaaactgaaatcctgtcatttgcaa-tAAATAGATGGAGCTAGAGGACCTTATGTTAATTGAAATGAGCCAGACACACAAAGACAAGTTCTGTGTGTGCT

a score=7687
s chr3            17386820 470 + 160039680 AGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGAT-CCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTA----ATAAA-------ATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAA-AGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAA
s HiC_scaffold_1 178899403 455 - 233722169 Agatcaaag-aaaaggaaagctccttgattctttttat-atGTTAGTATAATTCTAATACTGAAAGTCGATCAATATactaggaaaaatggaaaaaatcctAT-AATTTTCTATGCAAATAT-GATAGAAATTTTTTTATAGCATATAGCAATTGATTCTGGCT--CTGTGTTAAAAAGAATAGTA----------------TGACCTAGTGGGTTT-ATTCTAAGACCATGAGGAAGGTTCACTATTAGAAAATCTATCAATGTAATTTATTATATCAACAAATTACATGAAGAAAGCCA-ATGATTATATCAATAGTTGCCTGAAAGGCATC--ATAAAATCCAAAAGTCCTTCCCCATAAAAATCCAAGTAAGTT--ATAAATAAAGGAAACTATTTAAATATGATAGATCTTTTTCTATTCAAACTCAGTAGCAAACAGTGTAATAAACTGTGACACACTAAAATTATTTACACTAAAA

a score=33760
s chr3            17386825 2051 + 160039680 GAAGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAA--CTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaa-cgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaaactcttctcaaggataaaagaacctct-------ggtggaatcaccatgcctgacct-aaagc----tttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtgg--aagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcac-ataaaaccagagacactgaaacttatagaggagaaagt-ggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacag----caatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatc-tttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaa-------------aatcaaataacccccttaa--------aaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattc---------aggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga
s HiC_scaffold_1 201219161 1798 - 233722169 GAACTGGGACAAACTCTACCAAACT--TTTTATGAAACCAGCtgtaccctgataccaaaatcagacaaagatacaccagaaaaaagaaagatctcagATTCACATATTTGATGAACAAAAATGCCCAAATTGTCAA--------------ACTGAAT-----AGCACAGCATAAAAATCATACACCACAATTAGATGGGATTCACCttagggatgcaaggatggttcaacatatgcaaatcaagaaatatggccaactaaataaa-----------------acaatatgatt-ttgcaatagatgcagaaaaagcatttgataagatGCAACCTCTTTTTGTGACAAA--TACTCAATAGACTAGGTACAAAAGGATATGAC---AAAATACTAAAGTCTATATATGAAAAACCCATAGTCAATATCACTCTGAATGGAGAAAAGTTGACATTATTTCCTCTAAGATCAGAAACCAGACAAGGAT-CCCAC--catacatactttt---atatagtactagaagtctt-gcaagaacaattaggcaagagaaagaaa-------------------------------caaaat------------------------------------------------------------------------------cagc-------------------atAAAA---------------CAGTAGCATTT-TATACACTAATAATGACCTTtctgaagaagaaatgaagaaggcaACCCATTCACAAATACCTATaagt----taaaatattcagaaaaaaccTTAACCTATGAAAATGAAA-------------------------CACTGATCAAAGAAATTATAGAACACACGTGAAAAATGAA---------GTGTTCACAGACTGGAAGAATTAGtattattaaaatgatcatactactcaaagtgatctacagattcaatgcaattctcaTC-ACCTACCAATAACTTCcgtcacagaaatagaa-aaacaattctaaattttatatggaaCTACAAACATCCTA-AATAGCCACAGTGATCCCCAGAGTTGGAAGACCAGCTTAATACCAGAGGCATCataatatttgacttcaaagcaAGAGTGACTACAAAGCTACAGGAactaaaacagcatggtactggcataaaatcACAGA----GACTAATGAAATATAATAGACAA-ATAGAAATGAATCCATATTC--ATAGTCAACTGATTTTCATCAAATGAACCAAGAACATGCAGTAGatataaaaaacaatattttcaatgAATGATGTTAGCCAAGTTGACCATACATatgcagaacaaaacaaa--aatccctttcTTTTACTCTACACAAgcatcaactcaaaatggat--ggCATCCTAACTCTTAAACCTGAAATTATGAAATTACTATAAGAAAATTTCAGGGAAATACTTCAAGGCTATGAG-ATAGgcaatgatttcttttaaaggtAAGACTCCAAAGGCACAGGCAACATACGTAAAAATGGATAGGTGGTATGGTATCAAACTAtgaagcttttgcacagcaaagaaaataatcaatagCATTAAAAGATGATCTGTGGAATGGGAGAAAAGCATCTGCACACCCTTCATCTGACAAAGGGTTGATATCCAGTATATATTGGGAACTCAA-AGGCtgaacaccaaaagaaaaagaaatccaaataaataaaaaccccaATCTCATTCAGAATGGGCTACAGATCTAAGCAGACACTCCTCA------------AAAGtggccagaaagccccaaaaatgctgtttcactttctt----ttcagagaaatgcaaatc---------------------------------aggatggctatcatcaaaaagacaacaaagcaaaataaaacaagat-ttggTTAAGAGGTAGAGAAA-AGTAATA------CATCGCTCATGTGAATGCAAATTAGTACAACCATTACGGAAAACAGtttggagattcttca-aaaactacaAACAGATTTACCATTTGGTTTAGCAGTTCCACTGCTGACCTCatatccaaatga

a score=12788
s chr3            17386837 503 + 160039680 ATTCTACCCAACTCATT--TTATGAAGCCACT------------------ATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT-----------GTAATCCATTA------TATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAA-TGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGAC-AAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagt
s HiC_scaffold_1 143016731 538 - 233722169 ATTCTATCCTTTTCATTCCTCCTAAAGTCATTCGTGGAAGTAAGAATTTCATttccctgatatcaaaaccagaaaaggactcaATCAAAAAAGAGTAATATAAATGACCATC-CTCATGAATATCGGTGCAAAAATATTcattaagatactggcaaacagagtaTAGTAAATGATCTAGATTATT-TTGACCATAATCAAGTAGCTCTCGTATCAGTGATGCAGCAATGGTTCAatgtacacaaatcaataaattatcAATAAATGTGGTGTATTAACACCACATTAACAGATTCAAG--TCAGAACTACATGATTATCTCCAAAGATACAGAACACACATTTGACAAAGCCCAACAATAATTCATGAAAAAAGTCCTATAGAAAATTATaacagatggcctttatctcaatctgattaaaGCCATCAATGACAAATAAACAGTTAATATTATATCAAAGtgtcaaaaaactgaaagctttctctgtaATTTCAGGAATAAGATAAAGGGTGTCTGTTGTTTCCAATCCTATTCATTATAGT

a score=11232
s chr3            17386856 740 + 160039680 ATGAAGCCACTATT----ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTT--TTcaacatagtacttgaagtattagcc--------------------------------agagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattc--caacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaaca
s HiC_scaffold_1 149604821 717 - 233722169 atgaggtcatgagtttcaaccctggtaccccccccccaaaaa--------aagaaaagaaaaccagcatCCCATATCGCAAATGAAAATAGATATAAAG-TCCTCAGTGAAATACTAACAAACTAAATTCAACTGCTTAGTCAAAGAATTATTCACTATGACCAGGTTAGATTTATTTCTGGGACATAAGAATGGCTCATAACATACAAATAAATCAGTGTAACAC---ATATTAATAG----AAAGATAAAACCCACATGAGAATAGCAACATTTGCA-CAagatcatttgaaaatttttgatATCCAGTTGCAATAAAAACTATTTATAAATTAGGAATAGAAAG---AGCTTTTGTTATCACAACTGAGATCACAAGAAAAGCCAAACGCACCAT-------AATTGATACAAGTTGAGAGATTTTCCTCTAAGACCTAGTACAGAATGAAGAGGTCC---CTCTTGCTACCTTTATTCATCATAATAATAGGTATCTTGGGTaaagaaattatacaaaaataaaaaaagaaaagaaagaaattagacaagaaaaagaagt-aaaagtatccaaattaaaaaggaagaaataaaatgatc----tcTGCAGATCACATGGTAGAA---------AACTTTAGAGattcaataacaaaaaaat--tgaa----ataagtaaattcagtaaaatTACAGGATACCA-------------AAATCAGTAGTATTTCTCTATACTAACAATAAATtatatcaaaagaaaactaagaaaata

a score=12325
s chr3            17386909 410 + 160039680 GAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCA---AGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT-CAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC
s HiC_scaffold_1 189668224 412 - 233722169 GAAAACTACTAAACAGTGTCACTTAgaaacataggtgcaaaaatcctcaacaaaatatttac-aatggCAACCAGTGGCACATGAAGACAATCATACCCCACGATGGAGTGCCTTTCGTTCCAGAGATGCAAGGGTGGTTCGCCATGCACAGATCAGTAAGTGTAGTACATCATATGAATAGAGTGAAGGGTGAAACCCACGTATTTatctcaacagatacag-aaaagcATTTGATGAAATTCGGTACCTCATCATGACCAAAGCCTTGGACAAAAAAGTTACGTACAGAAGCTTACCCCCCAATATTATAATGTCTTCATCTGGCAAACCTTCACCCGATATCCACAGTGAGTAGTGGAAAACCGAAAGCATTTCCTTTAAGgttaggaacaagacaaaggtGAGCACTCCC

a score=18918
s chr3            17386927 552 + 160039680 TCTCTTATGAAC--ATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC--AAGGCCAATACCTAAACATGATA-AAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCA-CTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaa
s HiC_scaffold_1 220736845 548 - 233722169 tctttgatGAATGTATTGATG--AAAGTGCTCATCGAAATACTAGTAAGCCTAATCCAAGAGCACACTGAAGAGATTTTTCACCATGATCAAATGGGACTCATCCAAGGGATACAAAAATGGTTCAATACACACAAATCAAagaatgtaatacactatatcaacagCATAAAGGACAGAAACCAGATGATT-TCTCAGTAGATTCAGAAAAGCCATTTGATAACATGTAATATCTCTTCACAATAAAAATgctgaacaaa--ataaattcagaagGAACATATCTCAGCATAATGTAAGGTCATTTATAGTAAACTAATGGCTAAAA--AGACTGAATGGGGAAAG--TAAAAGTTTTCTCTCCAAGATCTGGAACAAGATAAGGATACTCATCTTTCTCACT-TTTATTAAATGTAGTTCTAGAAGTCTCA-CTAGAGcagttaggcaagagaaagaaataaaaaggcatccaaataggaaaagaaaaagtcagattgttattgtttgcagatgatatgattttACATAGATAAAACCTCAAAGACTcctccagaaaa

a score=18456
s chr3            17386949 1928 + 160039680 AAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG-----TAGGTTTTATTC----CAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAA----TCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagagga-------------------------------------------------------------------------agtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaa----ttccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta--actcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatg--ataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaa----aaaaccgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactac--------------------------------------------------------------------------------------agagcaattgtgat-------------------------------------------------aaaaactgcatggtactgg--------------tatagagacagacaagtggaccaatggaatagaattgaag-----------------------------------------------------------acccagaaatg-----------------------------------------------aacccacacacct-----------------------------------------------------------------atgg-------------tcacttgat---------------cttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccata-cttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaa-----accagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacag----gggaaaaattcctgaacagaacagcaatggc-ttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac---cgaatggcagagaagcacctgaaaaaatgttca---------------acatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgac----agcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaa
s HiC_scaffold_1 156303328 2300 - 233722169 AACCCCCCCACAAAATATTACCCAATTGAATGGGCTAGCACATTAAAAGAATTATACATCAGGTGAAAGAATTATACATCATATCTTTCTCTGGGATGCAAGActt-ttcaacatatgcaaatcagcaaGTGTAACATATCATATTAACAGAat-gcagaataaaataatatgatcatcttaatagatgcaggaaaagtaTTTGACAAGATTCAACATCCTCTCATGATATAAACCATCAACAAATTTGGCACAGAAGGAATGTACCTCAGCAGTATAAAACCTACATATGACAGACCCACAACAAACATCA--------GAAGAAAGGCAAAAAGCAAAAGGTCTTGCTCTCATGA------AGACAAG------------CTCTCTAC----TCATTACACTGCTGCAAGTCCTAGCCAGA--AAtcagtcaagaaaaagaaat-aaaggcattcaaataaaaaaggaagagccaggaatatagctcagcggcacaagcaatGCAAAtgcaatgtcctgagtttgattcctggtaccaaaaaagggcagaaataaaactgtttgcagatgatatgatcttACATGCAAAAAGCCCTAAAGACTCTTTCCAGAGGAATACTATTAGACTAGATAA-----TTCAATAAAGTTTCAGGACACGAGATCAATATTCAaaca--tcattttccttt-tatacactaa----caacagtctga-aaatatctttagaaaataatattaCTTATAATAacactaaaaacaacaaaatacttaGGAGTAAATTTAGCCAAGGAAGGGAAAGATCTGTAAGCACTGAAAACTGTAAAGCATTGATGGGTGAcgttgaagaaaacaaaaatacacagaaagataTCACCTGTTTATGGTTCAGAAGAATGATTACCATTATAGTGTACATACTACCCAAAGAGACCTCAAGATTTAATGTGTCCCCTCTTAAAATCTCAGTAACATTTTTACAGAACtggaaatcaaaattttaaaaatccataaggaaaaacaacaataaaagttCAAGTAGGGAATGCAGTGCT---GAGCCAGAGCACAGTTGGAGGAATCACATTGCTGGATCCCAAAATGTGCtacctctgttttattttgttttgttttgttttggtttgtattggtttgattttgtcACTGAGTCAAAATGCCTAACATCCATAATTTAAAGAACAGCTTTAATTTGACTTCCCGTTTCGGAGGTTTTGTCCAttgtcagctgactccaaggcagaaacactgtGGTGGAGGGAGGTCAGCAACctcatggtggccaagaagcagagcaaaggggaggagccagggaggaaggagggagaaaccAGATGGTCTCTGAATGCTGCCTCCACAATTTACATGgccacacccagaagtgtgctttactagcTGTCTCTCAAGCCAATGAAGCTTACtgtcaagattaaccatcacacctGCAAAGTTTGTGGAATCCAAACAACACAGTAGTTGGTATAAACACATACAGACCAATGAAGCACAATGGAAAACCCAGGGAATCATTTCATTTATAGTCAAATAATCTCTGAGAAAATGTCCAAGAACAAACAATGg--gaaaaacattcttttcaatcaATGATTCTGACAATTTTGGCTATTtgcatgaacaaaaataaaattggatcCTTATCTTAAACTTTTGTA--AATATAACCACAGAATCGATGAAAG------ACATAAATGTAGacttgaaactttaaaaatttctacaaaaacaaaaggaacaagTTTC-------TTGACACTGGTCTGGCAATGATTTTTAGATATGACTTCAAAAGCACTGgcctaaaaaggaaaaactagacAAATGGGATTGTATCAACCAAAAAAGCTCCTGCAcatcaaagaaaacaatccaatacGT-----GACAGCCtagaaaatgggagaaaatatttgcaagtcagCTGTCTAATaggat-ttaattttcaaaataagtaaggAATTTAAACAGTATCCTGGCAAGAAAATACTCGACTCACTTTCTAAA--------AGAACTGAATAGATACGtct----taaagaaaacatacaaatggtcaacaagtgttttttaaattgcTCAACATCACTCATGATtacatcactaatcatcagggaaaggCAAATCAAGACCATAAGGAGATATGAGCTCAAGCTTTTAACAATGACTATTATCAAAAA---AGACAACAATTAATAAGTGTTAGAAAGgatataaagaaaaaggaacatttgtaCACTCTTGTTAGGAGTATAAATTGCTACAGTCATTATAAATAAC-----------TCTTTGTAAA-------ATAGGACTATCCTCTGGTCTGCCAATCCCATGTCTTTgtatatattcaaataaa

a score=3914
s chr3            17386960 87 + 160039680 AAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGG
s HiC_scaffold_1 115439738 87 - 233722169 AGAATCCTAGCATACCAAATCCAAAAGCATCTTGAAAGAATTACATGCCCTGATCTAGTGGGGTTTATTCTTGGAATGCAAGAATGG

a score=57107
s chr3            17387010 2104 + 160039680 TGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG--ACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattcca--acagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccgaggatagcaaaa-----actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaag-gtggacctcagaaaatcaaataacccccttaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggctt-gtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaagg
s HiC_scaffold_1 138321675 2032 - 233722169 TGATCACATAGATTTCATCATGATGAAGGAAGAaaggttcaacatatgtaagtcaataaatgtaatgcatcccATAAACAGGAATGAGGTTACAAAAACCACACTATCATATCAGTAGACGCAGAAAAGACTTTCAAAAAAATCCAACACCC-TTTATGTTAATAGTCCTGAAGAAAGCAGGTATAGAAGGATCATACCTGAAAAtgataaacaaaaaaatatttgtaactaACCAATAGcaagcattatattaaatggggaaaaactaagAACATTTCCcctaaaatc-------agacaaaaatgtTCACTTTCGCCTCTTTTATttgacaaaatactcaaaacattagacagagcagttaggcaagagaa-------aaaaggatacattttggaaaggaatattttaaattatcactatttgcaggtgacat-------taTACAGAAGGCCCAAATAATTCCACTAaaaaaaactcttagaattaataaccaattttagcaaagtagcaggatataagatcagcacacaaaaatcattaCCATTTTTGTGTACCAACAATGACTGGGAt-agaaggaaatagagaaaatgatACCATTTAGAGTTGCTTCAAGAAAAGTGAAAGATgtagaaatcaacctaaccaaggaaataaaagacctctacaa-gaaaactatagtattctataaaaggaaactgaagaggaaATCAGGAAATGATAAGATATCCCCTGGTCCTGGACAGGTAAAACTAATATTAACAAACTGGTCATGCTTCTAAA---ACTGTACAGATGCAGTACAATTCTAATCAGAATACCAcagc-atactttacagatctagagaaaccaaCCCTAAAGTTCATATAG------AAAAGGCTCAGAATTACAAAAGTATTGTTGTTCAAAAAGATCAAAGAAT-----GTAACATATCAATACTAGACttcaaactatattacaaagccacagtgataaaaatggcTTGGTATTGGAACAAAAAGAGACATGTTGGTCAGTGGAACAGGATAGAAGATACAGAATCCTCCCCAAATGTATTCAACTATCTGATCTTTCACAAAGGAGACAAAAGCAG-TGTTGGAGGAAAG--AATCTTTTCAACAAGTGATGTGGGCAAAACTGGCTCTC----TGCAGAAGAGTG-AAACTGAGCCCTAtatatcaccatatactaaattaaaaataaaatgggtcaaagatctaaacattaa--cgCAAACATTAAACCTACTGGAAGGCGAAATAGGTAAAATACTTGAAG--ATGAGTGTAGAAAagaattttctaaacagaacttcagttgcacaagaaatatcagaaagactcaacaaatgggattacatcagact-gaaagcttctgtacagcaaaagaattcatcagcagagtgaagagataacctataGACTGAAAAAA---TTCTATCTACTTT--GCCA-------GACtaatacaaagaatata-aaagaattgaaaaaatttaaaccacCTACAATTATAT-ACttagtcaagaaatgggcaaaagAATTGGACAAACACTTCACatagaaagaaatacaaacagtcaacaaatacatgaaaaaatgttcaacatctctgaccattacagaaatgc-aattaATATAATCCTGAG---TCACTCTTCTCTGAAAAGAATGGCAATAATTAgcaaatcaagcaataacaaatgctgtcatGACTGTGTC-AAAAAAGAACCTTCCTATATTGTCTGTGGGAATGCAAACTTAGTACAATGATGAAGGTaatctgtatggagatttctcaaagaactgaaattagaaattctgtgAGATCCATCTATCCTTCTGCTAGGAATCTTCCCCAAAGA--CCTCAATTCATC------ATACAT-----ACAAAGTTTATGATAGCATAATTCATAATTACTGGTTAGTGGAGGCAGCCTCTATATGCaccaacagatgactggata-agaAAAT---CTATCtgtacataatggaatactacttggctataTAAAATGGCACATGTaagacatttataggaaaatggatatgcctggaaaatataatgttaaatgaaataaaccaaacacacaag

a score=43466
s chr3           17387010 2069 + 160039680 TGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGC-TGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaa--caacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtccctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccattaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaaccg-aggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcac------catgcctgacctaaagctttactacagagcaattgt-gataaaaactgcatggtactggtatagagacagacaagtggaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaaggg-agccaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacactgtctataagacaaaaagaccaccaacagactgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtggacctcagaaaatcaaataacccccttaaaaa-atggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagcagatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-----gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagaagccccaactggtaagaagg------acacatgctccactatgttcatagcagccttatttataatagccagaaactggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaa----ttcctagccaaatggatggacctggaga
s HiC_scaffold_1  2194758 1974 - 233722169 tgaCCACATTGCCTTCACCCCAGGGATGAAAGGATGGCTCAAGGTACGCAAACCAATAAATATAATCTATCACACACACAGAAGCGAGGACAGAAATAATGT-ATCATCTcgatagaggcagaaaaagcttttgaaaaaatcCAAgattcattcatgattaaa------aagaaaacaggcagGAGAGGACCCTGACtcgatctgataaaagccatttaggGC--ACCTACTGCCATTATCATGTCAAACGAGGAGAAACCAAAATCTTTCTTG-TAAATTCAAGCATAGGAGAAAGCACGTCCACAGTCACGGCTCCTGCTTCACACAGTGTTCCACACATCAGCACGAGCAATCCGGCAAGAAACGGAAATAAAAGGGACATGGATAGAGAAGGAGGAACTCGAATTATCTTCATTTG---------TTctgctacatagaag---acccaaaatacCCGCCAAAAGATGTCTATAATTGATAAACAAATTCTTCAGAGGTgcaagatataaaatcaacacataaaaatcaagagcatttctCTAGACCAACCAGGAACTCGCCGAGAAAGAAATCATGGAAAGTAAATATTATTCACAATACCACCAAGAAAAGTTAAGCACTTAGGAAT-----TAACTAAGAAACTGAGACAcctctacaacaaaaa---cagtaCCCTGAGAAAGGAGACCAAAGAAGCCATCAGAAGGCGGAAAGACATCTCCTCTTCCTGGATAAGCA----CAGTACAGC--CCATGGCCgtactttcaaaactgatatagGGATCCAAAGCAATCCCGATCAAAAT---AACATCATTCTCCAGAGCACTGGAGAAGGTAGTCCTGAAATTCAGATGGAATCAGAGCAAACctcagaacagcaaaagcaattttgggtaACAAGAGTAAA----------GTGGCACCACAGATTTCAAGCTC--TCTAAAGCTACAGTTAAAACCAGCTACAGAGAAAGCCAGCATGGT-CAGGCACAGAAACAGACCTGTGACTtaacagagcagaacagaggatgcagaaataacCGCAGACACGTTCAGCTATCTGATCTGTGACTAGGGAAGCCAGAAACATACCTTGGGGAAAAGATAGTCTCCTTAATA--------------AACTGACTGTTCATGTGCAGAAGACAGT--CTAGAACCATATCTCTCACtgtgtactaaagtaaaatcaaagagGAGCAAAGATCtcaatgtgaggacagaggcatttgatctgctggaagataaaataggtaaaactcttgaaggcaaAGATGTAGGCAAGGACCTT-----CAGAACTCCAGTTGC-------------acaggaatcaacaaatggggtcaTAGCAAACTAAAAGTCTTCTGCACAGTGAAAGAAACCGtgaacagagagaagagacaacctGAATAATGCAAAAAAATTCCCAGCTACTCC---TCTGA----GAAATGATacctagaatatgtaaagaactc---aaattaAACCT----ACCCCAAACAAGGCCAATAAAAAGATGAGCCAGTGCAAccaacagacacttctcaaaagaagaaatacagatggtcaataaatacat----aaatggtcAGCATTACTGGCCATTCGATTAGCGCAACTTAAAACAATACTCAAATTCCATCCTGCCCCATAAAGAACGACctgcatcaagaaatcaaataatagcaaatgct-cCAAGGCCTCAGGGAAAGAGG-ACACTTCTACACTGTGGGCGGCAGTGTAAACTAATGC-ACCACTACGGAAATCAGTGTGACAGTTCCTCAAAAAGCCACCACTGAAATTGCac------atgacccagctattcc-cccgTAGGTGTCTTCTTACAAGAG--CTGAAGACGTAGTACAGTGATCCACACACACCCAGGAGTACCCAGCGCAG-----GTGATAAT-Gttaagtcttggaagcagcctatat--ccTTCAACAAGTGCATGGACCAAGAAAC--TGGTGTTTAAACGCCGTGG-GTACTACTCTACCagaaggaaggataaacttgggttacttgtttttaa--aaatgcatataccTTGAGA

a score=7337
s chr3            17387012 308 + 160039680 ACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA---TAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCT
s HiC_scaffold_1 190943259 307 - 233722169 atcAATTGGGATTTGCCCCTGGGATGCAGG-ATGGTTCAGTCCTTGAAAATCAAACAATGTAATATCCCATACTAATAGAATCAGTGATAACAATAATATAATCATATGAATAGTTACAGAAAAGGCACTTAACAAAATTTAACACCTgcccatgattttaaaaactcagcaa--CCTAGGGATGAAAGAATATGACGTCAACTCCTCAGAATTTACATATGCAAAACCCACAGTTGCTTTCATAATTAGcagtgaaaaactgaaaac-ttttgtcTAAGATCAGAAATAACACAAGGATGggcactgttt

a score=8786
s chr3            17387080 369 + 160039680 TATATAAACAAACTCAAAGACAAAAACCACACGATCATCTCGTT-----AGATGCAGAAA-AAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCAAGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatat
s HiC_scaffold_1 111057032 359 - 233722169 TAGAtacacaaatacaaa-ataaaaacaatataatcaTCTCTTCTCAgcaaacacaaaagcaaacataTGATAACACTCAACATCTCTCCATGACAAAAATACTCAACAGACTAGGAATGGAAGGAAACCTTCTCAGTCTGATAATAAGCATTTATGAAAAATCTCCAGTCAGCATGATATGTAATGGTGAAAACCTGAATGCGTTTTCCCTAAGATCAG---------AAATATGTCCACTTTTGTTACTTCTATACAACACTGCA-TTGGGGCTCTAGCCAGGAAAATTtggcaagaaa-----ataaaaggtattCAGCTTTGAGAGCAAGAAGTGAAACTATTTCTGTTCACAAACTGTatgatactgtat

a score=12585
s chr3            17387085 565 + 160039680 AAACAAACTCAAAGACAAAAACCACACGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTCA-AGGCCAATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtata--tataag------------------------------------------------------------------tgaccct--------------------------------aaaaattccaacagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatagcctttctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagccacaaataatataaaatatctcggcgtgactctaacg
s HiC_scaffold_1 216177554 639 - 233722169 aaagagaaacagagaaaaaaatcat--gactCTCCCAATAGAGGCAGAAAATGCCTTTGACAAAACCCAACATCCATTTATGATAACAAccttgaagaaaataggtatagattGGCCTAATTTCAATCA--GTGAAAGCCATTTGTGACCAACCTACTACCAACATCATGGCAATtgaggaaaaactgaaatttttctctctaaaatgaagaacaaga-aaggatgtccactgtcaccactcctgttcaaagtagtccttgaaacattagccagagcaattgagcaaaacaaaaaagtaaaatagatacATAT------------AGTCAAAATATCATTACTTGCAAATGACAAAATACCCTACTTACAAGCCTCAAGGGCCAGGGAGCTATCTCAGCAGCACAgacacctccctggcaagcgccagattgtgagtttgattcccactacaaaaaacaaaacaaaaaaaacctcaaaaaaattCCACGAAAAGACTCTTGGAATTAATAACCAA-TCCAGCAATGTATCAGGATACAAAACAATCACACAAAAATCcata-cattcctatacactactAATGAACTCAtt--gaaagaaatgaggaaaaaaaggattttcacaatagcatcaag------aaaacaTTTAGGAATGTTCCTTATG

a score=35937
s chr3           17395200 2321 + 160039680 TGAACTGCCCACCTCAACCTGCCCTGCTGTGGCTGCAGCTGCTTGTACCACCTCGGAACTGGCTGGATGATTGGGCCACAATCTTCAATGAGTAGAAATATTCCTCAGTTCTGTGGTGTTCTTGATCGATCACACGTTTATGGAGTTTCTGAAGGGCAGCGGAGATTACTGTCAGGCACCACAGAGCCTCTATGCAGACAAGTGAACTGTAGAAATTCATTACTTCTCCACCAAGAAGCCCATGTAAGAGTGGACAACCTGGACACAGGAGTGTTGAATTGAAATCTGCAGAGCATTTGATA------------AGAGCTCAGACCCGA---------ATGGAGTAAACTTCAGTG-----CACTTCCT-TTGTATTGCCTCAGTATTACTGGAGTGAAGAATCACTG------------CTTCTGTTTCATTGCTCA-----TTTTTCCCAAAGCAGTGAGAATTTCAAGTGGAGTATATTGAATATTGAAGTAGACTTCAGGCTGTTttttggtttggtttggtttggtttggttttggtttggtttggtttt----gttctgttctgttttgttttgttttgttttgttttgttttgtttgtgtgtgtgttttgAATTATTTCTGTATTCAATTTTTTAAAATTCTTTCATAACCTATTGGGTGTTTaaaaca-aacaaacaaaacaaaac-----aaaacaa----gaaaaac-------aaCTAAATTAACGTGTCTCAGATGAACTTCTTTGCTCCTGTGGAAGTCACATGCAAGAGCATGAGATTTCTTACTACATACAATTCAACCAGTGCGACCTTAAAACACATTTATAGAGGAACAT---AAGTATGGAGATACCACAGTAA-GAGTATATGGG-GCAACTTTCGACACTACTTTTGTGGAGAAAGAAGGCACTCCTGTTCTTGACTGACCTCTTGATGATGGTGCACCACCCTCCAACCAGATTGTCGATGACTGGTTAAGTCTTCTGAAGATTAAGTTTCAGGAAGAAATTTGTTGCTGCATTGTGTCCATTGCGTTGCAGGCCTTGGCAGAGCAAAGGTGTTTGTTGACCTAGCATTAATTGAAGGAGGAATGAAATATGAAGATGTAGTATAATTCATAAGACAAAAGTTGCTTTGAGCTTTTGACAACAAGCAACATTTTTATCTGG----------CAACATACCAT-CCTAAAATGTGGCTCCACTTCAACTATTCCGATGGCCATAGAAACAACTATTATATTCAGTAAAACTTTGGTGCCTGTTGCCATTGCCTAGGAAGTAGAACATCAGATGGGA-CCCATGT----------GTCAGCTTATGGAATAAATCTACTGAAGCT-CCACAG---GAAT-ACTGAAAGCCGGTTTTCCTCTGCCACAAGCTTGACAAAATTGCAAGCTCTATATTTGTATTATAATCAACATGTTTGGACACTTAGCTAAAAATATTTGCTGGTTAGTACTTAAAATATGCTTGTTATTT----GTACCAATTGACCTTTTCTAAAAT--AAGGTATTGAGTTATG---TCATTAAATGTAGTAT-GTGCCAGAATATTATTAGTCTATAAGGAATTTAGAAGGACTAGGTGCCAAGATACTCAGCACAGTACTTGTATAATTTTAGCATCACACAGAATCAAAATTCCAGGAATTAAGAACTCTCTAGACCATCCACGGTGTATTCCTTCAGTCATTTC--AAACACTA----CAGGGCTTCTCTCATTATCTGCCTGCTCACTCTGTTTACATTTCC-TGACTTACACCAGAATACATCAGGTTTGCTTAGCCATCC---ATTTT-------TTTTAAACTAAGTCTTGTGCTGATTATTTATTATTTT--------------------------GGAAAAACTCT---GTAGGAAAATCAACTTTGTTACAGAAGCACATATCTTCAATAATGTCTCCAGACAGAAAG-CCATAGAGCTAATGTTTGCACTCACAGGTGCAACTT-CACAGGGAAGCCTATAAACAAGAGGGGGCAATTAAATGTGTTTAGTGATATGTTACCTTTGTCTTGTGCAGGATGGAGAGTATATTCTTTAAGTTAGTAAATATTTTTAAAAGGCACAGA----TTGTTGCAGCTAA-ACAATCCTTTATTA---AAATTTCTGAAATTCTTGTGTTTTCCAT-----ACCTATCAGAAGTTTTTCAATTTGTTTGAATTATGGTTTTCCCCTTCTCTTCCAAATCTCTCGCAAAAAAAGAAAA-----AGCAGCATCTGCTATTGAACTGAGCAGA-----AATATTTTATACAACTTTTGAGCTATGTAACTTAATAATTAGAAACCCGATCAACTGTTTTATTATATAGTCAATAAAATGGTGATGTGCATTAATGTTTGTTCAACCATAC-------TTTGTGGGAATGTGTAGTTATAATTTTGTGGGAAAAAG--TTTGTTATTGTCCAGTAGCTTGTAAAAA
s HiC_scaffold_1 94156080 2298 - 233722169 TGAACCTCTGTCCACAGCCACTGCTTCCCCCACTGCCTCTGTCACTGCCAGCTTGGTACCAGCTGTATGATTAGGCTGTGGCCTTCAAGGAGTGGAGAAACGTCT---TTATATGCAGTCCTA---CAGCCAC---------GAGTGGCTGAAGGGCAGCAGAAATTACAGGAAGGCACAGCATGACCTCAGAAAGGACAGGGGAACTGTAGCATGTCATTACCACTCCCCCAAGAAGCCCTCAGGAGAGCTGGGAAGCCTGGCTCAGAAGTGCAGGACTGACAGTGGCAGGGCTTGTTACAGCTCTGCTGGAGACAGAGCAAGCCCCAGCTGGAGCGATGGAGCAAACCCCAGCGACAGCCACGCCCCAGCGAATGTCCTCTCCACGGCTGTGCCAAAGAGCTCCAGGTAGGAGGTTCATTTCCCATCCACTGCTCCCCACTTTATACTCAAAGTGCTGAGAACTTCACTGGGAGT-------ATACTCAAGTAGACTTTAATCTCTTT-------------------ATATGATTTCTGT---ATTCAACTTTTAAGATTCCTTCCTA---------------------------------------GTGATATGTATGGTAAAcataataaatttcttaaaaatttcct-------------tGTGCAATAcataagcaataaaacaaaatttttaaatgcaattctttagaactttattaaaaaaaattagcacagCTTAAATGAACCATCTAGATCCAACAGGAATCACA--CAGAAACATGTTATTTTT---TATACACAACCCAAGCGacaaaagcttaaaa-aaattTACTGAGAAACGTAAGAAGTTTAGAATCATTACAAAAATTAGAAGATGGGAGTAACTCATGATGCTGCTCTTGCGGAGAAAGAAGGCATCCGCGGTTTT-ACTGGTCTTTCGATAAAGG-GTACCTCCATCTGCCCAGACTGGTGAAGTCTGG---------CAATAGTTTAAATTTCAGTA--------GCTGTTGTACTGCTGTTCTCACACTGTGGGTCT---CAGAACTCCACTTCTTACTGCTCT-GCACTattaaaacatggaaagaaattcaaagatgcagtaaagttcaaaagacaaaaataacacgGAACCTTTAACAGCAAAAGACCTGCTTATGTGAAGAAGCATCTCCACATATAATACACAACACACTGTTGTGTTGCAGATG---CAATGATCACAGAAACAACTGTGATATTCAGTAAAAC-TGGGGGCACAGCGCTATTTCCTTAGAAATAGAACTTGAGACAGGACCCCATGTCAGCCACCAAGTTAGGTTGGTGGGTAAGCCTGATGATGCTGTCATAGGTTGAATAACTGAAATGCAGTTTTACCAGGATACA------ACAGAACT------TCTATGTTTGGATTATGATTGGCCTATT--GACACTTAGCAAAAGA---TTATCAATTACCATTTAAAATTTGCTTGTCATTTATTGATGCCAGTTGACATTTCCTGAAACCACAAATATTGAATTATGCCTTCTTTAAATCTATCCCAATGCCAGAACCTTATCAATACATAAGAAACTTAGATAAACTGAACACCAAAATACTCAGTGGAACACTTGTATGCTTTTAGTGTCATACAGAATTAAAATT--GGCAACTAGGAACACTGTCAATCTTCTGTGAC-CCTCCCCCTGGGCGTTTCAGAAATACTGAAATCAGGACCTGCATGGCTGCTTGCCTCCTCCC-----TTGCACTCCCATCACCTACACCACGAGATAGCAGG---GGTCAGCTACCTTTGATTTTGGCAGAATTTTTTACCCAGTCTTACAATGACTGTGTAATATCTTTCTATAAGTCTTCCTTTATGCTGTCATGGAAAACTTTCACTTTGAAAATTCTACATTG-TACAAAAG------TCTTTAATATGAT---TAGGCAAAAAATCTCTACAG---ATGTTTGTACTTTGAGATGAAACTTACCTGGGGAggcctagaaagaatgg-------------------------ctgttgcCCTTCTCATGGGCAGAAAATAAAGAACACGCTCT---TCAGTCAGTATTTTTGTAA-GTACAGAAACTCCATTACAGCTAAGACAACTCCCAACCATACAATTTTGTGAG---CTTATTCTTTCTATTGGAAAGTTGTTACCagctattatttttgtctttagtatatttttctccttttc--caacaCCTTTTGCAAGAAAATTAAAGGGGGAGGAAGGCTTGCTACTGAG-TGAATAGATAACTAGTATTTTATATGCCTACAAACCTGTGTAATTTAGTATTT--GAATatgataatttgttttattacatACTTGCTTTTCT--TTATGTATATTCATGTTAGTTAAACCACATATTTACACTTCTAGTGATGTG-GGCTATAGTTCTGTGAGAAACAGACATTTTTAGTGTTCACTGTCTTGTAAAAA

a score=14505
s chr3           17395859 1758 + 160039680 aaCTAAATTAACGTGTCTCAGATGAACTTCTTTGCTCCTGTGGAAGTCACATGCAAGAGCATGAGATTTCTTACTACATACAATTCAACCAGTGCGACCTTAAAACACATTTATAGAGGAACATAAGTATGGAGATACCACAGTAAGAGTATATGGGGCAACTTTCGACACTACTTTTGTGGAGAAAGAAGGCACTCCTGTTCTTGACTGACCTCTTGATGATGGTGCACCACCCTCCAACCAGATTGTCGATGACTGGTTAAGTCTTCTGAAGATTAAGTTTCAGG-----AAGAAATTTGTTGCTGCATTGTGTCCATTGCGTTGCAGGCCTTGGCAGAGCAAAGGTGTTTGTTGACCTAGCATTAATTGAAGGAGGAATGAAATATGAAGATGTAGTATAATTCATAAGACAAAAGTTGCTTTGAGCTTTTG-------ACAACAAGCAACATTTTTATCTGGCAACATACCATCCTAAAATGTGGCTCCACTTCAACTATTCCGATGGCCATAGAAACAACTATTATATTCAGTAAAACTTTGGTGCCTGTTGCCATT-------GCCTAGGAAGTAGAACATCAGATGGGACCCATGTGTCAGCTTATGGAATAAATCTACTGAAGCTCCACAGGAATACTGAAAGCCGGTTTTCCTCTGCCACAAGCTTGACAAAATTGCAAGCTCTATATTTGTATTATAATCAACATGTTTGGACACTTAGCTAAAAATATTTGCTGGTTAGTACTTAAAATATGCTTGTTATTTGTACCAATTGACCTTTTCTAAAATAA--GGTATTGAGTTATGTCATTAAATGTAGTATGTGCCAGAATATTATTAGTCTA---------TAAGGAATTTAGAAGGACTAGGTGCCAAGATACTCAGCACAGTACTTGTATAATTTTAGCATCACACAGAATCAAAATTCCAGGAATTAAGAACTCTCTAGACCATCCACGGTGTATTCCTTCAGTCATTTCAAAC-------ACTACAGGGCTTCTCTCATTATCTGCCTGCTCACTCTG----TTTACATTTCCTGACTTACACCAGAATACATCAGGTTTGCTTAGCCATCCATTTTT---TTTAA-----ACTAAGTCTTGTG------------------------CTGATTATTTATTATTTTGGAAAAACTCTG-TAGGAAAATCAACTTTGTTACAGAAGCACATATCTTCAATAATGTCTCCAGAC--AGAAAGCCATAGAGCTAATGTTTGCACTCACAGGTGCAACTTCACAGGGAAGCCTATAAACAAGAGGGGGCA-ATTAAATGTGTTTAGTGATATGTTACCTTTGTCTTGTGCAGGA--TGGAGAGTATATTCTTTAAGTTAGTAAATATTTTTAAAAGGCACAG-------ATTGTTGCAGCTAAACAATCCTTTATTAAAATTTCTGAAATTCTTGTG--TTTTCCATACCTATCAGAAGTTTTT---CAATTTGTTTGAATTATGGTTTTCCCCTTCTCTTCCAAATCTCTCGCAAAAAAAGAAAAAGCAGCA------------------------TCTGCTATTGAACTGAGCAGA-----AATATTTTATACAACTTTTGAGCTATGTAACTTAATAATTAGAAAC--CCGATCAACTGTTT----TATTATATAGTCAATAAAATGGTGATGTGCATTAATGTTTGTTCAAC--------CATACTTTGTGGGAATGTGTAGTTATAATTTTGTGGGAAAAAGTTTGTT-----ATTGTCCAGTAGCTTGTAAAAACACAGAAACACAGTGTGAGAGCTTCCATATCTAAATAAATGAAGAACACACCCAAAAATACAAATACAAATAAACACGTGAAAACTTAATAAAAGT
s HiC_scaffold_1 49784881 1525 - 233722169 AACTAAAGCAACATGGCTCAGATGAACCACCTAGCTCCTGTGAAAGTTGCATACAAGAGCGAGAGATGCCCTA-GACACACAACCCAAGCAGCGTGACCTTGAACTA-AGGTGGAGAGGACCCCGA----------------------------GAGGCAG-------------------GGAG--------------------TGATTGCC------ACGCGGGCGCA---------GGCCGGGCTGAC-----CCGGTCAAATCTCCTCAGCGCAGCCTCCCAGGCTGTCCAGACCCTGGCTGTGGTGTCTTGTGCGCTG-GCCGCAGGCCTTGG--GAGCTCGGGTGCCCAGTGCCCGGCGCCCGCCCGGGGGAG--CTGGCATATAA--------------------------------CCTGGGCCTCCGCATCAGAGCAGCCCGCAGCG-CTGGGTCTGCAGGAATGTCAGCCTGAA--GCGGCTCTGC----------------------------------------------------GTGCCCGCTGCTGCTCGGGGCAGCCCTGGAAGCGG----TCA---CGGGCTCGCGAGTCCGGC----------------------------------CTGGGGGCTGCTTTCCCGCCG------------------------------------------------ACTTTCGGACAGCTACCCAGCGCTTCTCCCTGTGCAGTG-TTCACGTGTGCTTGTCGTTTGTA-------GCCTCTCCCGCAATCACCGGGCTTCGGTTATCT----------------TCCAGGTCCATTCTGAATCTGAACGCATGCTGAGAAATTCAGAAAG-CCAGGTGCCAAAGGGCCCAGTACCGCTC----ACACTCCTAGTGTCATGCGGAGCC-------------CTGAGAGCGCTGT-GACACTACGAGGTCCATTCCTCCAGGTGGTTCAACCCGCGGGGCCTGCGTGGCTCC------TGCCCGCCCGCCCACCATGCGCCTCTGTGGTCTCC-ATTCACACCAGTCTACATCAGGGCTGCTTAGCCACTGATCTTTCGCTTTAAATACTACCAAGTCTTGTGACTATGTGGTTTCTTTCTGCAAGTCTTATCTTGTGCCCTTAGGGGAAACCTCCATTTTGAAAATCTAGGTTGGTGCGCAGGGAGGTCT------TAGTGTCTGCAGACCAGAAAGGCCCTGCAGTTCAT-TTAAGGCTTGAAGTTGAAG------AAGGAGGGCTTGAAAAAATCCTGGGCATATT--ATCCACCTA-----ACGCTGCCTTTGTGTTGTGCAGAACCTGCAGTCTATGCTCTTTAGCTTAATAA--CGTTTTAAAAGGTGAAGGTGCTTCGTTACTGTAGCT-GACGATTCTTAATCATAA-ACCTGAAGTTCTTGTAATTTTCCCACACTTATCGGAAGCTGTTTaccaatttatttttgttttg---------ttctcttcccagccttttgcaaaagatgaagaaagaggaggaggaagaggagaagaaatggGTTTCTCTAATGAATACAACAGACCTCtaatattttaaacatcttttgAGCTGTATAAC--AATATTTGGATACtattggataatttttttttgtattatataaTTGATAAAATGGTGATGTGTATTAATATTAGTTCAGCTGTGTGTTTATACTGTCTGGGAATATGTGGTTATACTTTTGTGGGGTAAATAATGTTTCAGAATTCTCC---AGCTTGTAA--------ATACTTGGTGTGAGAGTTTAAGcatctaaataaataattaagtcaaaaaagtataaaagtattCAGAAAT------AAACTTAAGAAATGT

a score=4055
s chr3            17586333 103 + 160039680 ATGACCACTAATAGGTATAGGTTTTCTTTCTGAAGTGAAAGACATATTCTAAAAGATCACTGTGATGATCAAACAATTAAA-ATCTACT-AAGCTGTACATTTAT
s HiC_scaffold_1 171655005  94 - 233722169 ATGACCACCAATGGGTATGAATTTGCTTTCTGGAATGACGGACATATTCT--AATATCACTGT---------ATAATTAGATATttactaaaaatgtaaatttat

a score=6051
s chr3           17803614 145 + 160039680 AACAATAACAATAACTGTTTAGATACCAAAAAGTAGATGACAATACCTTAGCCATATGTATCATTTTAGGCTCAAGTGCATCTCCTGTCCTCGTCCAGTGGAGTACTAACAGTTCTTTACTTTCATAAGATTTACCTTCTACTTT
s HiC_scaffold_1 39751516 144 - 233722169 aaaaaaaaaaaacagtggttaGATGCCACGAAGTAGGTGGCAATGCCTTAACCGTATGCGTGTTGTTAGGCCCAAGGGCCTCTTCCATCCTTGTCAAGGGGAGTGCTAACC-TTCTCTCCTTTCATACAACACACTTTGTAGTCT

a score=44537
s chr3           18009581 1414 + 160039680 TCTgatgaagaaga--ggaggagaagaaggatggtggcaagaagaaaaag---aagaagataaaggaaaagCACATTGATCAAGAAGAACTCAACAAAACAAAGCCGATTTGGACGCGAAATCCTGATGACATCACTAATGAGGAATATGGAGAGTTCTACAAGAGCTTAACCAACGATTGGGAAGAACACTTGGCAGTAAAGCATTTTTCTGTTGAAGGACAATTAGAATTCCGGGCCCTTCTTTTTGTCCCAAGACGCGCTCCTTTTGATCTGTTTGAAAACAGAAAGAAAAAGAACAACATCAAGTTGTATGTTCGCAGAGTTTTTATCATGGATAACTGTGAGGAGTTAATCCCTGAGTATCTGAATTTCATTAGAGGGGTAGTGGATTCTGAGGATCTCCCTCTAAATATTTCCCATGAAAGGCTGCAACAAAGTAAAATTCTGAAAGTTATCAGAAAGAATTTGGTCAAGAAATGCTTAGAACTATTTACTGAACTAGCAGAAGATAAAGAGAACTACAAAAAGTTTTATGAGCAGTTCTCAAAAAATATAAAGCTTGGAATTCACGAGGACTTTCAGAATCGGAAGAAGCTTTCAGAGCTGTTGTGGTACTACACATCTGCTTCTGGGGATGAGATGGTTTCTCTGAAGGACTACTGCACCAGAATGAAGGAAAACCAGAAGCACATCTATTTTATCACAGGTGAGACCAAGGACCAGGTTGCTAACTCCGCCTTTGTGGAACGTCT-CCGAAGGCAGGCTTAGAAGTAATTTATATGATTGAGCCCATTGATGAGTATTGTGTGCAACAGCTGAAGGAATTTGAGGGCAAGACCTTGGTGTCTGTTACCAAAGAAGGACTGGAACTTCCAGAAGATGAAGAGGAAAAGAAGAAATAGGAAGAGAAAAAGACAAAATTTGAGAACCTCTGCAAAATTATGAAAGATATTTTGGAGAAGAAGGTTGAAAAGGTGGTTGTGTCAAACCGACTGGTGACATCCCCGTGCTGTATTTTCACAAGCACATATGGGTGGACAGCAAACATGGAGAGAATCATGAAAGCTCAAGCCCTCAGAGACAACTCAACAATGGGTTACAAGGCAGCAAAGAAACACCTGGAGATAAATCCTGATCACTCCTTTATTGAAACCTTAAGGCAAAAGGCAGAGGCTGACAAGAATGACAA---ATCTGTGAAGGATCTGGTCATCTTGCTGTATGAAACTGCACTCCTATCTTCTGGCTTCAGTCTGGAAGATCCCCAGACCCATGCTAACAGGATCTACAGGATGATCAAGCTTGGTCTAGGTATTGATGAGGATGATCCTACTGTGGATGACACCAGTGCTGCTGTAACTGAAGAAATGCCTCCCCTG--GAAGGAGATGACGACACATCACGCATGGAAGAAGTAGACTA
s HiC_scaffold_1 53744390 1378 - 233722169 TTTGATGAAGCATCTTGTAAGACAAGACTGGTAAgggtaagaaaaagaaagccaggaAGATTAGGAAAAC-----TTGACCAAAAGGAACTGAACAAGACCAAGCTCATTTGGACCAGAAACCCTGAGGACATCACTCAGGAGGGTTATGGAGAATTCTACAA---CCTCATCAGTGA-------------CTGGCAGTGAAGCACTTCTCTGTGGAAGGTCAACTGGAATTCAGGCCACTGCTATTCCTCTCTC-ACAGGCTCCCTTTGACCTCTTTGAgggc---aaggaaaaagacaagatcaAACTTTTTGTCCATTACACATTCACCAACGATGGCTGTGATGAGTTGATCCCCAAGTACCTAAACTTTATCCATGATGAGGTCAGTTTGAAGGACCTGCTCCTGAACATCTCCCAAGAAATGCCCCATCA---CAAGACCTTGAAAGTCATTCCCAAAAACATAGCTAAGACATGCCTTGAGCTCTTCTCTGAGTTTGCATAAGACAAAGAGAAC-ATAAGAAATCCTATGAGGCATTCTCAAAAAATCTAAAGCTTGCAATCCCTAAGGAGTCCACTAACAGGTGACACTTTTCAGAACCACTGTGATAACACACCTCTCACTCTGAAGACAAGATGATGTCCCAGTCTGAGTATATGTCTTGCATGAAGGGTACATAGAAGTTCACCTACTAGATCAC-TGTGAAAGCAAGAAGCAGGTGGCCAATCCTACATTTGTGGAGCATGTGCAGAAATGGGGTTTCAAGGTGGGGTACATAACTGGGCCTATCAATGAACACTGTATGCAGTAGGTCAAGGAGCTCAACAGGAAAAACTTAGTGTCTGTGACCAAGGAAGACTTGGAACTGCTCATGGACTAGGTGGACAATAAG----ATGAAGAGAGCAAGATGAAGTTTGAGAATCTCTACAAACTCATGAAGCAAATCTTGGATAAGAAAGCTGAGAAGGTTACAATCTCCAGTAGACTTATGTCTTCACCTTGCTGCATTGTGAC-AGCATCTATGGCTGGATGGCCAGTATGGAGTAGACCATGAGTTACCAGGCTCTCCATGACAACTCTAC-ATGGGTCACACAATGGTCAAAAAACACCTGGTGACCAA-----------CCCATGTGAAGGTGCTGCAACAGAAAGCCAAAgctgaaaaaaatgacaaaagaaatgccACAGACCCAGGGGTGCTGATGTTTGAGACTGCCATGCTCTGTTCTGGCTTCTCCCTGGAGGACCCTCAGGCCCACTCAAACTGCATCTACCACATGAGCAAGCCTGGCCTGGGTACTGGCGCAGACAAAGTGActgcagaggagcccagtgcTGCTGTTCCTGACAAAATCTCTTTCCCGTTTAGGGAGCTAAGGATGTATTTCATATGGAAGAAGCAGATTA

a score=23539
s chr3           18533778 635 + 160039680 GAAATGAAAATCTGTGTGCCTAGAAACAGGTTTTAGAGGTAGTTTCTTTTCACAATATCATTTTTCAAATCACTGGCTAAGGATTGTGGTG-------------------GTGGCAGTAAAATGGGCAATATCAAACAGAACTATCTGGAAGCATTTATTTCCAATCCAAAATGAAGCTTTATCTAGTGCTTGTCACAAATCTACATATTCTTCTCTTCCAGCTGACTACAATCA-----------------CAAGGTATACCTCACTTTGACATCTGATGACAGGACAGTAGTGTGCTACCACACTTCTGTGGACATTTCCTACAAACATACTAAACCTATCTCTCAACCAGATCATCTGCATAATAAAGAGAAAACACACAAGCAGGTGCTGAAAACCATATTAGAAGGAAAATTCAATGGGCTTGATCAAGGGCCCATTAAAGAACAACTAAGCAAGGTGTTCTTCACTACAAATCATCGCTGGTTCCTGCATGGACAGTTTCACAGACATTCCAAGAAACTGAATCCTCCCAAAGACAGGTGACTACTCTTTATTCTCT---GAGCATCAA--GGAAATTTTGCTTTGTATCTTATTTGCCAGCTGATAAAATGTAC----GTGGTGTGTTCATTAAGATGGTATATAGGAAAATAATAAAAGTACCCTTTCATGT
s HiC_scaffold_1 44465603 650 - 233722169 GAAATTAAAATTGGTG--CCTAGAAGCAGATTTTAAAGGTGGTTTCTCCCC----CATCTTTTTTCATATCACCACATAAGCTTCTTGATATTTTAtggcagcagcaacagcagcagtgaAATGGGCA-TATCAAAAAGGGCTCTCTTGAAGCATTTATGTTCAATCTAACGTGGAGCTTTATCACGTGTTTGTTGTAAATCTACATATTCTTGTCTTCTAAATGGCTATAattgtcttctttaaaaaaaatcaaagtaga----gCTTTGACATCTGATGGCAGGACAATAGTATACTACCACTCTTCTGTGGACATTCCATACGAACTCACAAGACCTATTCTGCAACCAGATCTTATCAATAATATTGAAGAAACACATAATCAAGGGCTAAAAACCAGATTAGAAGAAAA--TGAAT-ACCTTGAGCAAGGACCCACGATAGAACAATTTAGCAAAACGTTCTTTCCAAGGAAGCATCGTTGGTATCCTCCTGAACAGTATCACAGATGTCACGTGAAACTGAATCTTCCAGAGGACACATGA----TCCTGAAGTTCTTgggagaaacaaagagaaatgttATCCTGTACCTCATTTGCCATTGCAGAAATTACATTCTAATGCTGT----------ATGgta-atagtaaaataataaaa-tgtcttttcacat

a score=6067
s chr3            18644382 468 + 160039680 gaactgaaggagcttggcaaag-ctagaaagcaa-gcct--------tctgtagcattctcttaccctcctttatctttcCTT-----------------------CATTTCCTAAGGCAGGTCATAGAAACTAGAACTGCTCCCCAACACAGCAAGCCATAAAACCTAGAAACATCTCTCTGACCTACCTCCCC---------TGAAAGTAGGTCACAG--------------TACTTGGTCCAGA----------AAGATCCCATTTTATGATG-----------TATAGGAAGAGAGAGCAAATTTTACATAGACAGGCTAAGTAAAACTAGGGCCAATACATTTCCTC-----------CAGTCAATTAGTGTTCTGTCCTCCCCCTCTAGCCCAGTCCCATAGATACAAAGGCTGTCCATTCTGCATCAGACCCAAACACAG----AAGTAGTTTTCCCTAGGTCTTAGAGCCTTCCTTTCAGAACTTTCCTGACATGGTCAGTGTACTAAGCAGATATGTTGTTTTGTTTGTTTTGTTTTCTCACTCTGTCTTT
s HiC_scaffold_1 135262231 530 - 233722169 GAACCAAAAAACAATGGCAGGGGCTCAAAAGCAATGTCTCTTTGTGATCTGTATTTCTCTCTCCTAGTCCCCTTTCTCCCCTCAGGCAGGCCATAGAAGTGAGACATATTTCCCTATGTGGATCATAGAAACTAGAACTCATCTCCCTTAAAGGCATCCATAAAATCTAAAACTATCATTCTGGCCTTCTTCTGCCCTTCTGTGTAAAAGTTGGCCATAAAGAAATCCCCTAACTACTATGCCTAAGACTAGATCATAAGATCCTCCTTCTACATGGAGACCTGCCCTATTGCCAGGCAGAAGAAACGCTACATAGAGTAGCCATGAAGAATCTGAACAGACAGGCTTTGCCGGATTTCTGCTCAGTC-ACTGGTGTTAAGTCAGACTCTCTTTGTCCAATCACACTTCTACAGA-GCTGTACATTGTTCGTCAAAGCTAAGCATAATGACCAAAAGTTTTCCCTGGGCCTTTggatcttcatttc----ttttctt------------------------cttctttttttttttttttttttttttttttttgtcttt

a score=21307
s chr3            18753046 392 + 160039680 TTTTCAT--TGCAGATATTTCTACTGCAAAGATGGCCAACATACCTAAAACCTGAAAGACTTTCTGTAAGAAATGTGGCAAGCATCAGCCTCACAAAGTGATTCAGTAT---AAGGGCAAGGAGTCCCTGTATGTCCAAGGAAATCGGCACTATGAATGCAAGCA-----------GTGGGCAGGCAAAGCCAACTTTTTGAAAGAAGGCCAAAGCCACAAAGAAGATTATGCTTATGCTTGAGTGTGTTG--------TGCAGATCCAAGAGGATGCTGGTCCTTAAGAGATGAAAGCAGTTCGAACTGGAAGGCAACAAGAAGAGAAAGAGCCAAGTGATCCAGTTCTCAAACTTGTTTTCTCTGAGAGGAAAATACTGAAGCAGTAGAAAAGCATGACCTGCTAGAGAATAGA
s HiC_scaffold_1 203219956 411 - 233722169 TTTTCATCGTGTAGACCGCTTTACTGCCAAGATGGTCAACGTACCTAAAACCCGAAGGACTTTCTGTAAGAAGTGCGGCAAGCATCAGCCTCACAAAGTGACCCAGTACAAGAAGGGCAAGGATTCCCTGTATGCCCAAGGAAAGAGGCGCTACGATCGGAAGCAAAGTGGCTACGGAGGGCAAACGAAACCTATTTTCCGGAAGAAGGCTAAAACGACCAAGAAGATTGTGCTCAGGCTGGAGTGTGTGGAACCTAACTGCAGATCGAAGAGGATGCTGGCCATTAAGAGATGCAAGCATTTTGAACTAGGAGGAGACAAGAAGAGGAAGGGCCAAGTGATCCAGTTCTAAACTTTGTGTT---TAAGGCAAAAGTGTTGAAGCTGTGGGAAGACAGg--ctgtaggaaaataaa

a score=4156
s chr3            19014104 166 + 160039680 CCATGAACCTAGAAGTGCATTTGTTGGCACAGCAAAGGAGAACTAAGATTGTACATGGAATTAACATTTATGATAAACTAACCTTAAAACACGAGGTTTTCTAATGATATCCGGGTTG--TTAAAGGAATGAC-----CACATGGTCACAGGAGTGACTGGGGGTCAGAGGAA
s HiC_scaffold_1 154883704 165 - 233722169 CCATGAAACAATAAATATGTTATGCTACATGGTAAAGGAGAATTAAGGTTATTGATGGAATTAACATTGCTAATTAACTGACCTTAAA----GAAGTTATCCTTGATTATCTGAATGGTCTCAACAAAATCACAAACATACATGGCAACAG----AACAGGGAAGCAGAAAAA

a score=7064
s chr3            19200024 143 + 160039680 GTGTGCTCTATGGACCATGTGCTGCTATGGATGCCTGAAGTTGTTGACCTGCAGGTT-GGGAAGACTCAGCCATCTCCATGCTGGGCTGGATTAAGTGCCTGATGAGGATGTGGTTTCAGCGAGTTGGGGTCAGCATGCAGTCG
s HiC_scaffold_1 220279824 142 - 233722169 GTTTACTTTATGGACAATGTGCTGCTATGCACGCCTGAAGTACTTAAAATGCAAATTTGGGAAAGCTTTGCCATCTA-ATGCTTGGCTG-ATTAAGTGCCTGATGAGGATGGTTTATCAGCAGGCTGGAGTAAGTATGCAGTTG

a score=6844
s chr3            19206453 97 + 160039680 ACTATGGTCTGGAAAACCATATGGTTCATCTCGAAGTATCGTAAGGAAAATTGGTACCAACTTATCTCTGATTCAGTGTCCAAGAGTTCAATTTCAG
s HiC_scaffold_1 220279968 95 - 233722169 ACTTTGGTCAGGAAAGC--TATGGTTCATCTTGAAGTATCGTAAGGAAAATTGGCACTAACTTATTTGTGATCCAGTATCCAAGAGTTCAGTTTCAG

a score=8065
s chr3            19211461 123 + 160039680 TTCCAGCTTACCAGCCATGCAACAGAATGGAGTCCCGCACACTCAGGAGAGGATGCGGTGGCATCTTTTGCTGATGTTGGATTGGTAGCCACTGAAGAAGGAGAGTGCTCAATAAGACTCAGG
s HiC_scaffold_1 220280057 123 - 233722169 TTTCAGCTTACTAGCCATGTGACAGAATGGAATTCTGGTCACCCAAGAGAGGATGCAGTGGTGTCTTTTGCTGATGTTGCTTGGGTAGCCACAGAAGGAGCAGAGTACCCAACAAGACTCAAG

a score=12524
s chr3            19215467 272 + 160039680 CAGGGCAGAAGTCAGTTCCAAGCCTCCTCATGAGGATGACCCTCCTTGCTTTGAGAAGCCCCCAAGCAGGCACACTTCCTTCCCAAGCCTGTCTCAAGACAAGCCTTCTCCAGAGA---GGACGCTGGCCAGCGAGGAGGCCCTGCAGAAGATCTCTGCCCTTGAGAATGAGCTTGCTGCCCTTAGAGCTCAGATTGCCAAGATTGTGACCCTGCAGGAGCAACAGAGTCCAAGTGCAGGTATGTGGCCCCTGAAGTGGCTTGTTGTGACTGGAC
s HiC_scaffold_1 220280176 272 - 233722169 CAAGACAGAGGTCAGATCCAATCTACCCCTTCAGGATGACCTT---TTCTTTGAGAAGTTCCCAAGCAGGCATATTTTCTTACCAAACTTGTCCCAAAAAGAGCCTCCACCAAAAACTATAACACTGGTGAATGAGGAAGCATTACAGAAGAACTGTGCACTTGAAAATGAACTTGTTGCTCTCAGAACTCTGATTGCTAAAATTGTGACCttgcaaaagcaacaaaatctCACTGCAGGTCGCTTATTGCAGAGGTGCCTTCTGGTGTCCTGGC

a score=7796
s chr3           19574635 279 + 160039680 TTTCTCCTTGCTTTTAATTTTTAAAAGAAAATTAGCCCTGCGACACCATCCAGACAAGAATCCAGATGACCCATCTGCTGCTGAGAAGTTTAAAGAAATCAACAACGCCCACACAATCCTCACCGACACCTCAAAGAGAAACATATATGACAAGTATGGATCGCTGGGACTCTACGTGGCTGAACAATTTGGAGATGAAAACGTTAACACATACTTCATGTTGTCAAGCTGGTGGGCAAAGGTAAATCACTTTTTTTTCCCTCAAAAGCAATTTCCTGG
s HiC_scaffold_1  9128207 276 - 233722169 tccctccttcctcct---tttggGTAGGAAACTGGCCTTGCAGTATCATCCAGACAAGAATCCAGGGGACCCCCAAGCTGCAGAAATCTTCAAAGAAATCAACACAGCCCATGCTATACTGAGTGACCCTAAGAAGCGGAAAATCTATGACCAGCATGGCTCATTTGGAATATACCTCTATGATCACTTTGGCGAAGATGGAGTTAGATACTATTTTATAGCCAATAGTTGCTGGTTCAAGGTACACAGCTCTCCTGGTCCCTAGGACAGATTCTCTGG

a score=8664
s chr3           19644605 177 + 160039680 GAAATGAGCACTTCTCTGAATTACAAGTCTTTCTCCAAAGAGCAGCAGACCATGGATAACTTGGAAAAGCAACTGATCTGTCCCATCTGCCTAGAGATGTTCACGAAGCCTGTGGTCATTCTCCCTTGCCAGCACAACCTGTGCAGGAAATGTGCCAGTGACATCTTCCAGGTAGGT
s HiC_scaffold_1  9131862 177 - 233722169 GGGATGAACTTCACGGTGGGTTTCAAGCCGCTGCTAGGGGATGCGCACAGCATGGACAACCTGGAGAAGCAGCTCATCTGCCCCATCTGCTTGGAGATGTTCTCCAAGCCCGTGGTGATCCTGCCCTGCCAGCATAACCTGTGCCGCAAGTGTGCCAACGATGTCTTCCAGGTGGGT

a score=9637
s chr3           19645270 181 + 160039680 CAGGCCTCTAACCCGTACTTACCCACAAGAGGAGGCACCACCGTGGCATCAGGGGGCCGCTTCCGCTGTCCCTCCTGCAGACATGAGGTGGTGTTAGACAGACATGGGGTCTATGGACTGCAGAGGAACCTGCTCGTGGAAAACATTATTGATATCTACAAGCAGGAATCCACCAGGTAAG
s HiC_scaffold_1  9146924 181 - 233722169 CAGGCCTCGAACCCTCTGTGGCAATCCCGGGGCTCCACCGCTGTGTCTTCAGGAGGCCGTTTCCGCTGCCCATCGTGCAGGCATGAGGTTGTCCTGGACCGGCATGGCGTCTATGGTCTGCAGAGAAACCTGCTAGTGGAGAACATTATCGACATTTACAAGCAGGAGTCCTCGAGGTGAG

a score=8485
s chr3           19659146 150 + 160039680 CAGCCCATGTGTGAAGAGCATGAAGAGGAACGCATCAACATCTATTGTCTGAACTGTGAAGTGCCCACCTGTTCCTTGTGCAAGGTTTTTGGCGCCCATAAGGACTGCCAGGTGGCTCCCCTGACTCATGTGTTCCAGAGGCAGAAGGTA
s HiC_scaffold_1  9147449 150 - 233722169 CACCTCATGTGCGAGGAGCACGAGGAGGAGAAGATCAACATCTACTGTCTGAGCTGCGAGGTGCCCACCTGCTCCCTCTGCAAGGTCTTTGGGGCCCACAAGGACTGTGAGGTGGCCCCGCTGCCCACCATTTACAAACGCCAGAAGGTA

a score=7715
s chr3           19670921 239 + 160039680 AGGAGTGCTGCAGAAAGCAGAAACAGGACCTGTGTGAGAAATTTGATCACCTATACGGCATCCTGGAGGAGAGGAAGACTGAAATGACCCAAGCCATCACTCGAACACAGGAGGAGAAACTGGAACATGTCCGAACTCTTATCAGGAAGTATTCCGATCACCTGGAGAACGTATCCAAGTTGGTGGAGTCAGGAATCCAGTTCATGGATGAGCCCGAAATGGCAGTATTTCTGCAGGTA
s HiC_scaffold_1  9150149 239 - 233722169 AGGACAACAGCCGCAGGCAGAAGCAGCTGTTAAACCAGAGGTTTGAGACGCTGTGCGCGGTGCTGGAGGAGCGCAAGGGCGAGCTGCTGCAGGCGCTGGCTCGGGAGCAGGAGGAGAAGCTGCAGCGCGTCCGCGGCCTCATCCGCCAGTACGGAGACCACCTGGAGGCCTCTTCCAAGCTGGTGGAGTCGGCCATCCAGTCCATGGAAGAGCCGCAGATGGCGCTTTACCTCCAGGTA

a score=8749
s chr3            19788669 433 + 160039680 TGAACAATTTGTCTCTCAGATGTCTC----------ATTTGTCCCCGGATAGCTATATACTAAGGTATACTGAGATCATGTTA--GCATCACTGTAGTTGACAGGAAATTAGTCTGATGTGTGCAATAAAATGGAATTGAAAATGTTGTTTCCCAATCAATTATGCCAAATAAATTCTTCTGAA------AATGAGAGCACAACCAGCTCTTCTCATCATCTTGCACTTTGCTCCATATTTGTT-------------TTATGATGGGT----ACACCAAGAGGTGGTACAGAAGGGATGTTGAG------GCTGACTTAATTATGCTGAAAACCAAGGGGAGTCTAACTGTAAAAA--CACAGTCCATCAATAATAGTAAACTGAA-------CTGAACTTTACACTGAAAAATAGAAAGCAAATTTGAGGCAGAAGGATTACCACCAGTTTCCAAATATCCAATACCTGACTGAGGATAGTA
s HiC_scaffold_1 158712546 471 - 233722169 TGAACAAATTGCTTCTTcaatatatttgaaagaaaaatttgctCCTGGATA--TTAGTACTAAAGCCAA--------ATGTTAAAGCGTAATATTGGCTCACAGGAAATTGTTCTGATATATGTAGTAAAAGGAAATTGGAAGCATTATTTCCAAATCAATCATGCTACATAAATTCAACCATATGGGTCCATCATATTGCTATGGTCTCCTCTC-TGATCTCGCACTTTGTTTTACATTCATTGCTGTAGAACCCCGTATTTTGGCTCTACAGACCAAGA-GTAACACAGAATGAAAGCAGGGCTCATCATTAATCTGAGCACATGGGAAGCCACGGAGAGGCTGCATATTATGATCCATAGTCCATAAATCAGAGTGATCAGTAGAACTGGCTGAACAGCGAGTTGCAAAATAGGCAGCAGAGTCTGGATAAAATGGTTGCCAACAACTTCCCAATACCTACTAGCTGGTGGATGGTGGTA

a score=9104
s chr3           19934243 1307 + 160039680 CAGGATCTGTT-AACTTTCAACGACGTGGCTTTGAACTTTTCATTGGAGGAATGGGAATGTCTCAGTTTTGCTCAGAGGACATTGTACATGGAAGTAATGTTGGAGAATTACAACAATCTGTTATTTGTGGAAA-----------------ATCAACGCAT--ATGTGGAAAAAATGAGTCGGTCTTGGA---------------TCAAGACATACAGCACATTGTCAATGAGCATGGGCATATCCGAAAGA-------------AGTCTTCTA---------------------AATGTAATGAGCTTAGAAATGTGATCCATGAATCCCCTGAAAGTACACCTTATAATACTAACCAAAGAGATAC------CACTCTCCAATCCTCAAACCTAAAAAGACATAAAACTGGGACCACTAAAGAAGTTTGC-----------ACATATAAAGACTGTGTAAACCGTTTAAAGGTGTCTTC---------------TATCATTAGTCTCA-ATCAAGGAACCCACGTAGAGAAGAAAGAACACAACAGAAATA-AAAATCTTG-ATGAGGTTTTGGTTT---CTAAAC--ATAAACCCATTG---TGAGACAAAACAAT-----AGTGAAATGAACActta------cacttgtggtg-------------------------aatttgac----------aaatgctt-tac--tcagagtgacaatcttcaaagtcagcagagaat-----------------ttatccaggaaag-----------------------aaatcttacaaatgtagtgaatgcgacaaatgctttactcaaagaggcaatctgagaattcatcagagaattcatacaggagagaaaccttacaaatgtaatgaatgtgacaaatgctttacccaaccatccaatcttagtattcatcatagaattcattcaggagagaaaccttacaaatgcagtgaatgcgacaaat--------------gctttactgacaaatgcactctgagaaggcatcagaaaattcatacaggagagaaaccttacaaatgtagtgaataatgacaaatgctttactgagaaagtcgatctgagaaggcatcagagaactcatacaggggagaattcttacaaatgtattgaatgtgacaaatgttttgcccagaaatcctatcttgtttttaatcacagaattcatacattaaagaaaccttacaaatgcagtcaatgtgacaaatgattttc--ccacaa-----acttagtatg---------agaaggcatc---agagaat------------tcatacagtagaaaaaacttacaaaaatgcagtgaatgtgataaatgctttactaataaaggccagactgagaatta-------atcagataatttataagttaaaaaaaaaccttacaagtattttgtatgtgataa---atgcagtacccacaa--catcagtctgacaaatcaacagatattttaaacagtagagcaacattaaaaatgaaatgaatgagataa
s HiC_scaffold_1 46218748 1485 - 233722169 CAGGGTCTGTTTGACATTCAGGGATGTGGCCCTAGAATTCCCCCAGGAGGAGTGGAAGTGCCTGGATCCTTCTCAGAGGGTTTTGTGCAGGGACATGATGTTGGAGAACTACATGAACCTGGTCTCCCTGAGAATGTCTCCTTTGGACCTGAGTGATGTCTCCATGTTGGAGCCAGGGGAGAGTGCTGGAGTGTTGATGGCCAAGTGAAACCCTCCAGAAACTCA--AATGGGTGTGAATGTGTCAAAGGGGTAGCCATAGCCTCATTCTTCTGCTTCGCTACTGCTGTGGCACCATTTCAAGAAGGTCAAATATG---TCTCCTAATTGTCTCAAAGAAATTTTCATCAAAAGGGAGAAAGCAATACAGGAGAAATGTTCCAGATAATAATGTTGGAAAGACACAAAATCCATGGCACTGAAAAAGAATGCTTCAAAGAAATCCAGACAAAGA---TACAAAAC-TTTAAGTGTGatttcagagaaaatgaaagattctGTGTGACTCATAAGAAAAATTTCACTCAGAGAAGTGATGGTAGAAGAGATACAGAAAACCCTGTATTAAAAATTGGCTTGGAGTAAACTTTTAATCACATTGGCCTGAGCTGCAGCTATTTGAAAGGGCAAGAAATACTTATAAATGCAGTTACAGTGATCAGTCTATCAACAATGATTCCTCAATTTAATTACACCAAAGAAATGCTTCTACTGTCAAAACAAACATTTCtcatgaatgtaaatattatttcattgattctttattttcCACACAAGAACTGGTGATGCACATTAGTACAAAACCTTACAAATGAAATGAGTGCAGCAAA-ACTTCTATAACAAAGGC-----------------------CCATTCTGGAAAGAAACAATTTATATATGATGTATGTGGCAAAGATTTCAACCAGATATCAAACCTTAGAAGTCATCAGAGGATGCATACTGGAGAGAAGCCTTAC-AATGCAATTAATGTGGCCATTTTAAGGTATATAGGTCATCACCATCAAAGG-ACCATAAAATAGCATC----------CATAAGGAAAAAACCTTACAAAGGTCATTAATGAGGTAAAGTGTTCGGTTGTAATTCACACCCTGC-CATGCATTTAATAATTAACA------------CTTTCCAAAGTAATGAACATGGCGAGTTTTTCAGCCAGAATTCCAAACTTGCCTATCATTGTAGGATTGCCATCCTGGAGAGAA---ACAAATGTAGTAAATGTGGAAA--GATCTTCAAACACAAGTCATACCTTGTGTGTTATCAGACAGAAACCTTTGCAAGCAAGTTCCTTGCTCTtctcatactggagagaaacctttc--aAATGTGATGAATGTGGCCAGG-------TAAT-CAGTCTAAACTCATCTTTAACACATCACTGGAGAATTCACA--TTATACAGAGAGCTTATAAATATAAGGAATATGGCAAGGTATTCAGT---CACAAGTCATC--CctagaaaaacatcaaagaattCATCCTGGAGAGAAACCTAACAAATGTGACAAATGTGGTAA

a score=4517
s chr3            19934245 118 + 160039680 GGATCTGTTAACTTTCAACGACGTGGCTTTGAACTTTTCATTGGAGGAATGGGAATGTCTCAGTTTTGCTCAGAGGACATTGTACATGGAAGTAATGTTGGAGAATTACAACAATCTG
s HiC_scaffold_1 207543579 118 - 233722169 GGAACTGTTGACATTCAGTGATGTGGCCATTGGTTTCTCCTTAGAGAGCTAGGAATTCTTGGACTCTGCTTAACAAAATTTGTATAGAGATGTGATGTTAGAGAATTACAGAAACCTG

a score=27826
s chr3           20223770 918 + 160039680 CAGACTTAATTCATTT-ATTTTCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGAT---CAGTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTTTCCAGAGATCGGGGGTCAGGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGTCATCAGTAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATGGTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATGAATGGCTTGAACCTGGT-----------TAGGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGAACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCACGGCCACGACCTCAACCTCAGCCCCTAAGACCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCTCGGGCCCTCCCACTGCACCTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGAAGC
s HiC_scaffold_1 71897969 710 - 233722169 cagatttaattcattttatttttcttgtataaaaACCTTTATGTTGTAGCTACTGCTGGAGCTTGAGTCCTCCAGACAGAGACTCTGGTGTAAGTTTCCTCAAGATGCTCAGGGAATTCCTGGCAGGAAGACTTGGTGAACACAGTCTCTTTCCAG-------GGGTCAGGTGGCTCT-----------------------------------------------------------------------------------------------------------------------------------------------GGGGCAAGGGTCAGATGTA------CAGAGCCACCGTGGCACATCACCTTGCAAAGGACCGTGTGCTGCTTGCCAGTCTTGTTCCCTAAGTAGCCTTTTGGCACGGGGGTG-TGCAGAGCTTGGCCAGGACAATGGCCTCCTGAATGACGGTGGCTCCTTACTTGGAACACTTCACACCCAGACCCACGTGACCATTGTGGTCCCCAAAGGCAACAGGTGCCTTGAACCTGGTCCACTGGTCAGCAGGAGTTTGCTTCTGCACAGGCCTAATCCTTAGAACTTCATCCTTGAGGGATGCACCC-GGGGAAAGTCAGTCATCTCAGGCTCCTTGATGGGTAAGGAAAAGATACAGATTTCCTCCCGGGACTTCATCTTTATGTCCTTGACCAGCCCACCCAGTTAGGTAACAGGAATTTACTCC-TGTCATTGGCCTCCCTGCTGCGATCCCAATGGCC--------------------------------------CCTGCCAAAGACTCCAGG----------------------CCAGGGCCTCTGGTGCTTTAGTCCCTCCCACTGCACAGGTGTGAT---CCATTTGTTG-TTCCCCAAGGAAGAAGC

a score=32307
s chr3           20223774 911 + 160039680 CTTAATTCATTTATTTTCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGAT-------CAGTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTTTCCAGAGATCGGGGGTCAGGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGTCATCAGTAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATGGTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATGAATGGCTTGAACCTGGTTAGGAGTCTGCTTCTGCACTGGCATGATTTT-CAGAACC----TCATCCTTTAGGGACGAACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCACGGCCACGACCTCAACCTCAGCCCCTAAGACCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCTCGGGCCCTCCCACTGCACCTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGA
s HiC_scaffold_1 31945802 860 - 233722169 cttattcactttatttttctcatgtagaAGCCCT-GTGTTGTAGCTACAGCTAGAGCCTGAGGCCTCTGGACAGAGACTCCGGTGTGGACTTTTACAAGATGGTCTGTCTGCAAATTCCTACTGG-GAGACTTGGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTTTGGCAGCTGGATGTCTTGGAGATGATATCAATGGTGGCCTTCGTGAAGCTTCCCAGAGGAGCTGTGCAGCCCCTGGCAGAGGTATGGCAGGCTTCAGTGC-AGCCATCAG---------------AGAGGCAG----------------CCTGGGCATGGGGCTTAGATGCTG----ACAGAGACATAGCAGCCCCTCATCTTGCAAGGCACAGTACGGGGCTTGCTGGTCTTGTTCCCCCCGCAGCTTCTCTGCAAACAGACAATGGAGAGCTCAGCTAGAATCACTGCCCTTCAGAGGCCAGTGGCTACCTCTTTGGAGCACTTTACACCCAGACCAGCATGACCATTGGGGACCCTAGGAGAAACAAACACCTTGAGCCTGGTCTGCTGTC-----CAGCACAAATTTGATTCTGCAGGACTGGGATCAT-CTTTGAGGATGTAGCCAGGAAAAAATCAATAGTCTCAGACTCCTTGATGGGCAAGGTGAAAAGATAAATCTCCTCCAGAGACAT-ATCTTCATAGTCTTGACTGGCCAGCCCTACTTGGTGGTGGGGATCCACTC--TGTCCTGGACCTTTCCACCTCAAA-TTCACAGGCCCGGCCCCTAG-TGCACCCACAACCTCGAGGCTGA-----TGCTGAAGTCTCCAGAGACGCTCCTCTAGTGTCCCATGCCTGGCTCTC--------AGGTCCCTCCTGGGGCACTGGTGATATCC-CCATACGGTATTTTCCTGAGGAAGA

a score=32714
s chr3           20223790 898 + 160039680 TCCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATC--AGTGAATTCCTGATAAAGAGACTTGGCGAAGACAGTCTCTTTCCAGAGATCGGGGGTCAGGTAGCTGTAGGTCTTGGAGGTAGTATCAAAGGTGGCCTTGGCAGTGTTGGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCAT--CTATACCGGTCATCAGTAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGGCAGGGATGAGATGCAGCAGCACAGAGCCACAACGGCCTGACACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAGCATCTCCGCACAGGGACGATGGAAAGCTTGGACAAGATGATGGCCCCTCGGATGGTAGGGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTCCCCAATAGCGATGAATGGCTTGAACCTGGT-----------TAGGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACG-----AACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCA----CGGCCACGACCTCAACCTCAGCCCCTAAGAC--CTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCTCGGGCCCTCCCACTGCACCTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGAAGC
s HiC_scaffold_1  8999549 842 - 233722169 TTCTTGTATAAAAACCCT-GTGTTGCAGCTACTGCTGGAGC---------------AGGGACTCTAGCATGGGTCTTTATAAGATGTGAGTGAATTTCTG-TAGGGATACTTGGTAAACAAGGTCTCTTTCCAGAGGCTGGGAGTCAGGTAGCTGTAGAGCTGGGAAATGACACGATTGGTATCCCTGGCAAAGTTGCCCTGAGCAGCAGCGCACACCCTGACAGGAATACAGCAGTCATAGCTGTGCC-ACCATCAGAA----------------------------------GCCTCTGGGAGTAGG-----------ACAGCACAGAGCCCCTGCAGCTGGTCACCTTGCAAGGGACGGTGCGGGGCTTGCCCATCTTGTTTCCCTGGTAGCTTCTCCACACAGGGGTGAC----AGCTTGGCTGGGATGGTGCACCCTCGGATGGCAATGGCTACCTTCTTGGAGCACTTTAGACCCAAACCAACATGACCACTGTGGTCTATTG-GGCGACAGATACCTTGAACCTGGTCCACTGGCCGGCACGAGTCTGCTTCTGTACT-GTGTGATCTCCTGAGCCTCATTCCTGAGGGATGCTCCCCCCCCACCCAAAGCCCAAGGATCTCAGATTCCTTGGTGGGCAAAGACAGAAGGCCAGTGCCCTCCAGGGACCTGATCTGCATGTCCTTGACCAGCTGGGCCAGCTTGGTGACAGGGATCCG----CTGTCCTTGGTCTTGCCACTGCGAGCCCCACAGCCTAGCCTCAGCTCCTGCCATGTCCATTCCCGAGGCCCTGAAGGCCACTGCCCAAGCCTCCTTGGAAGCCTCTGTGGCCTCCCA---------CATCCACCCTTTGGGGCCTCCTGCTGTACCAGTGTCATTTGTCATTTTGTGGTTTCCCAAATAAGAAGC

a score=7394
s chr3            20224402 300 + 160039680 CTCCTTAATTGGCAGGGAGAACAGGTAGATCTTGTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGTCCAGCTTGGTGACAGGGATCCATTCCTTGTCTTCAGCTTTACCTCCACGAGCCTCGCGGCCTCGGACCACGGCCACGACCTCAACCTCAGCCCCTAAGACCTACCGAATCCTCCATGGAAGCCACCGCAGCCTCCTAATCCTGGGTCCCCAAGTCCT-CGGGCCCTCCCACTGCAC---CTGCGTCATCCGCCATTTGGTATTTTCCCGAAGAAGAAGCCC--ATTCTTTATGTT
s HiC_scaffold_1 140732170 229 - 233722169 CTCCTTCATGGGTAAGGAGAAGTGGTACATTTCCTCCAGAGACTTGATCTTCATGTCCTTGAACAGCCATCCCAGTTTGGTCATAGGAATC---TTATTGTCCTCAGCATTAATGCTGCAAATGCTGTGGCCTTGG--------------------------------------------------------------------------CCTGGGCCCCCAGGGCCTCCAAGTCCCTCTGCTGCACTGGTGGCGTCATCTGCCATTTGGTGTTTCCCAGATGAAAAAGcccaaatattttttgtt

a score=16514
s chr3            20540772 1390 + 160039680 CTGTAAGGTGGCCCCTGCGAATGTCAAGGAGGTA--GTCAGGCCTCTCCCCACTTT-----------------ATTGCAGGGATAAGACTGCCTATTTGGGCGTTCG---CAGCTTCAAGTCGGGAGG---CTTTCACCCAAACTGGGTTTGTGTCTCAAAGCCAAAGCCTCTACCTGCTCTACCGGATGATAA------------ATGTCCTAAGAT--------TGTACCTTTGTGGATCAAATGAATACCATCTGTTATACATCTTTCACAGAAAGCTTCAGAGATGGAGTACCCTATTTTATTGCTATACCTCATACAAAATATTTGGGCTCCTTTGGCAGAG---ATTGATTCACTATTCTTCGGGTGCTCAGTTCAAAACAAAAGTATGCGCAAGCTTCTTGCCATGCGCCAATAGGCAGACAGGCTTGTTGGCCCCAACCCACCCC-ATACATGTGTCAGATGA----GGATCCTAATGACCAGGTTAGAGACCTGGGCGTACAAGTACAGATTCAAGCCAAAACTGATAACC--TTTTGCCCCATCTTCATTATCACCCTCTTTTATCACCCAAACCAAGAGGCATTAATGTGGACCCTCAAATCTCTGAGTTCCTTGCAGTTACACATGTCACCCTAAATTTCTCCAATCCCTCCCTGGCCAACGACTATTGGTTGTACCTTGCACTGGGTGCCTCCTGGTCCCTAGTGGTTCCTTTGCTTAATTATTCTGTCCCTTATTTCAGAAAAGAAGATTGTAACTTTCTAAGGCCCTTTAAGCTTCTACCAACTGGTTTTAATGCATCTACTTGCTTCTTTAGCCCCTATAAAAATAATTCTTTGCTATAGATCTTGGATTGGCAGTATTTACCTCCtatatttattatattaatatttCTGAGCCAATTTGCCTGGGCAAGGGTAGAGTCTTTGTGTGTGGAGACAACATGGCCTATCCTTTTCTCCCTTTAAACTGAACTGGGCCCTGTGTCCCGTCCACGCTTTTGCCAGACATTGAGATCCTCCAAGGAGATCAGCCTGTTCCCTTGCCCAGTTTTGATAACTTTTCCCCCAGGCATAGGAGGGCAATACAATTTATCCCCCTACTCATTGGGCTTGGGATAGCTGGAACTCTTGCCACTGGCTCGCCTGGCATTGTGGCAGCTGCACATACCTATAATAAACTATCCCAAAGACTCATAGGAGATGTCAA--TATGGTTTAGCAGTCTGTCAAAGATctgcaggatcaggtagattccctggctgaggtggttctccaaaatagatgtggactaga---tctaattactgtcaacatggaggcatctgtttggttttacagggaaagtgttgtttttatgcagacaagtccaggattaTGCGCAACCCAACCCCAAAACACCAACAAGAATT-------AGAGAAGAGATGTCAGGAACTtttcttt
s HiC_scaffold_1 144606993 1259 - 233722169 CTGTTCAGTTCCCCATGTGATTGTAAGGGAGGTATAGTTATAACTAGGCACACCTCTTATACTAGAATGACAGATTGCAATGATAAGATGGCATA------CCTTCAATACAGCCCCTAAATGGGAGGAGGCTATGCACAAGAATGGGTATGTCTC------CCCAAGACTCCAATAACCCCCCAAAATAAGGATCAATTAGACCCATGTCCTGAAGTATGTAAAGTGTCCCAT----GAGTCAATGCATTCTTCTTGCTATAATTCTGTACAAGAATGTACAAAAGCCAATAAGACCTTTTTTAAAGCCATATTGCAAACAATTTCCAGACGTACTTTTAGAGGAGGTGATTGGTCCCTTATTTCACGGGTCCTTGG----GAATTCAAATATGCCCAGGCCTCATGCAGCGGCACAATTGGTAGCCTGGTGTGCTGGAGCAATGTAGCCCCGATACATGTTTCAGATGGTGGCGGACGCCAA-GACAAAGTTAGAGAACTTCAAGTATAAAAACTCAT--AGAGCAAATTATAGAACAGATGTTTCCCCATA--AGTTGTCATCCCCTGGTTCTCCCCAAGTCGAGAGGTATAGATTTAGATGCCCAGACCTCAGATATCTTAGAAGCCACTTATATAGCCCTTAATGTTTCTAGCCCATATTTGGCTAAAGACTGTTGGCTGTGCATGACCCTAGGCACAGCCATGTCCCTTGCTATTCCCTCA------GATTCTATCCCACAT-----------------------------------------------AACT-------------------------------------------------------------------------------------------------------------------TTGCCTGACTAGGGGACAAGTATTTGTCTGTGAGGGAAACATGGCTTTCACATTTCTGCCTGCCAATTAGACAGTGTTGCACATCATGGTTACCCTACTACCTGACATAGATGTTATATCTCGAGATGAGCCTGTTCCCATTCACAGTTTTGATTACATTGCAGGTCATACTAAGACAGCAATGCAGTTTATTCCCCTGTTGGTAGGACTAGGGATTTCAGGAGCCCTGGCGACAGGTACTACGGGACTAGGAGTCACAGTGTAT-CTTACTACAAACTTTCCAATCAGCTTAATGATGATGTTCAGGCATTGTCTAGTA--CTATTCAGGACACTCAAGATCAAATAGATTCATTAGCTGAGGTAGTTCTTCAAAATAGAAGAGGGTTAGACCTCCTAATGGCAG--AGCAGGGAAGGATCTGTTTGATATTACAGGAATGCTGCTGCTTCTATGTGAACAAGTCCAGCATTGTTTGAGACAAAATTAGGAGACTACAAGAAGACCTGATAAAAAGAAGAGAGCTATTTGAAAGCTCTCTCT

a score=11524
s chr3            20541174 930 + 160039680 CCCATACATGTGTCAGATGAGGAT---CCTAATGACCAGGTTAGAGACCTGGGCGT--ACAAGTACAGATTCAAGCCAAAACTGATA---ACCTTTTGCCCCATCTTCATTATCACCCTCTTTTATCACCCAAACCAAGAGGCATTAATGTGGACCCTCAAATCTCTGAGTTCCTTGCAGTTACACATGTCACCCTAAATTTCTCCAATCCCTCCCTGGCCAACGACTATTGGTTGTACCTTGCACTGGGTGCCTCCTGGTCCCTAGTGGTTCCTTT--GCTTAATTATTCTGTCCCTTATTTCAGAAAAGAAGATTGTAACTTTCTAAGGCCCTTTAAGC----TTCTA-CCAACTGGTTTTAATGC---ATCTACTTGCTTC-TTTAGCC------CCTATAAAAATAATTC-TTTGCTATAGATCTTGGATTGGCAGTATTTACCTCCtatatttattatattaatatttCTGAGCCAATTTGCCTGGGCAAGGGTAGAGTCTTTGTGTGTGGAGACAACATGGCCTATCCTTTTCTCCCTTTAAACTGAACTGGGCCCTGTGTCCCGTCCACGCTTTTGCCAGACATTGAGATCCTCCAAGGAGATCAGCCTGTTCCCTTGCCCAGTTTTGATAACTTTTCCCCCAGGCATAGGA-GGGCAATACAATTTATCCCCCTACTCATTGGGCTTGGGATAGCTGGAACTCTTGCCACTGGCTCGCCTGGCATTGTGGCAGCTGCACATACCTATAATAAACTATCCCAAAGACTCATAGGAGATGTCAATATGGTTTAGCAGTCTGTCA------AAGATctgcaggatcaggtagattccctggctgaggtggttctccaaaatagatgtggactaga---tctaattactgtcaacatggaggcatctgtttggttttacagggaaagtgttgtttttatgcagacaagtccaggattaTGCG
s HiC_scaffold_1 105357671 930 - 233722169 CCCATCCATGTATCTGATGGAGGCGGCCCACAAGATCAAATTAGACAAGAGTTTGTCAACAACTACA----------AAAAATGATAGACAGCTTATTCCAAAGATCAATTACCACCCATTGGCACTCCCCAAACCTCAGGGAGTGGACCTAGACCCATAAACTTATGCCATCCTTTTAGCCACTCAAAAGGTGCTTAATATCTCTACCCCTAACTTGGCTAAAAACTGCAGGCTATGCATGGCACTAGGCATCTCCATGCCAATAGCTATCCCCTCCAATTCAACACCTATCTCCCT-----------AGCAGACC----CCCCCCA---CCCTGTATGCAATTTCCTGTCCAGCCCGTGGGAATGACCAATTTATCTGTCCCATGTATCCAGGGATCCCTTAAAAATGACTCATCCATCATTGATGTGGGTCCCCTCATGTTCCCCAATTGCTCTCAAACCATCTATTACACTGATCCCTTATGCCCCACCTCAGGACAATTGTTTGTCTGTGGGGCCAATTTGGCTTATCCTTTTCTCCCATCCAATTGGTCAGGAATATGTATGTTAGCTGCCATTTTGCCTGATATTGATATAATTCCTGGACAAGAGCCTATACCCATAAGAGAGTTTACCTATATCTCTGGCCGCCAAAAAACAAGCAGTGGCTCTTGTCCTACTTCTGATAGGAATGGGTGTCACCGGGGCACTGGCCACTGGTACAGCTGGATTGGGTGTTGCCCTAGACAAGTACACTGAGATCTCTAACCAGCTGTCAGAAGATGTC--TGGGCCTT----GTCTGCCACCATATGGACCCTCCAAGATCAACTAGATTCATTGACAGAGGTGGTCCTCCAAAACAGACGAGGGCTAGACTTCCTAACTTCAG--AACAGGGCAGAATTtgtcttgccttacaggaaaaatgttgcttctatgttAACCAATCTGGCATCGTACG

a score=3837
s chr3            20541275 158 + 160039680 TTATCACCCTCTTTTATCACCCAAACCAAGAGGCATTAATGTGGACCCTCAAATCTCTGAGTTCCTTGCAGTTACACATGTCACCCTAAATTTCTCCAATCCCTCCCTGGCCAACGACTATTGGTTGTACCTTGCACTGGGTGCCTCCTGGTCCCTAG
s HiC_scaffold_1 176337714 158 - 233722169 TTACCACCCACCTCTGCGCCCAAAGTCCTGAGGCATCAGCCTGGACCCCGCTATGGAGGACATCCTAGAAGCCACCCATAGGGCACTTAATCAAACCAATCCAGCCCTGGCCTCCGATTGTTGGCTGTGCATGATGATGGGAGAGTCATGGCCGCTGG

a score=4535
s chr3           20542549 129 + 160039680 tGGAGCACCTAGAATGGAATTCTGCCCTACCTTCTCCCCTTCTTTGGCCCAGTGCTTGGCTtactaattctactatcactagtaccttttctttttaataaaattatggcctttattaagggacaaata
s HiC_scaffold_1 17497983 129 - 233722169 TGGAGTGTCTAGAGTGGAATCCTGCCTTATCTTTTGCCCTTGCTTGGTCCATTGCTAGGATTGCTACTCTTGGTTTTAATAGGCCCCTGTATCGTCAGTAGGCTAACTACCTTTACAATGCAGCAAGTA

a score=21284
s chr3           21113529 474 + 160039680 tctaattttctaccATTTTA-----CCCCTTGATCAGATGTTTGCAGAGCAACTCAGGATCACTTAGTGGTGGCTCCAACCTAGTCAGTGGCCTGCATTGTGAGAGTTGCTGAGCAGTCCTCAGTGGCTGGCTGTGCACTCCAGTCTTCAATAGGAAAATGATGAATGGGAACAGAGGATACCCACACACCATCAGACGGGTCATCCACCTCTGGTTGAGCTGCATTGAGCTCAGGAGCTG----ATGTAGTCTATTTGCCTTGAAATTCCTCCCTTGGTCACAGCCTACTTAGCAGCACCCTGCTTCTCCTTCTCAAACTCCCCTGGATCTCTATAGAAGTAAAGGCCAAGCATAATTCATTATGAGCACTCACAGGAGGTAGTACTATGCATGAATATAGTACATCCCGGACCAGCATCCATCACATCAGACTCACTGAGTGAGCTCTCTTGTTGTTGCATGAAAGCGCAATGTCCACATA
s HiC_scaffold_1 35128090 475 - 233722169 ttttattttctatcaacCTAATTCCCACTTTGCTGAAATGTTTCCAGAGCAGCTCAAGAGCACTTGGTGATGATTCCTACCCACTCAATGGCCTGTGTGGTGGGGGCTGAAGACCAG-CTTCTGTGGCTGGCTGAGCACTCCAGTCTTCGGTAGGGAAGTGCTGGCTGGGCACAGCAGGCACCTGCAAGCCTTTAGACCAGTCTGCAACCGTAGGCTGAGCAGCAGTCAACTCATGAGCTGGTGCGTGCAGTCCATTCGCCCTTAAATT-CTTCCTTGGTCACTGCCTTCCCAGCAGCAGCCTGTTCTTACTTTTCAATCTTTTCAGGGTCCCTGTAGAAG-AGAAATCAGGCATGACCTCCCATGGGTGTTCCCAGGAGATGGTGCCAGGCATG--TGCAGCACTTCCCAGACCAGCATC---CACATCAGACCCACTGAGTGAGCTCCCTTATTGTTGCACGGGATGGCAATGTCCACATA

a score=8098
s chr3            21113553 449 + 160039680 TTGATCAGATGTTTGCAGAGCAACTCAGGATCACTTAGTGGTGGCTCCAACCTAGTCAGTGGCCTGCATTGTGAGAGTTGCTGAGCAGTCCTCAGTGGCTGGCTGTGCACTCCAGTCTTCAATAGGAAAATGATGAATGGGAACAGAGGATACCCACACACCATCAGACGGGTCATCCACCTCTGGTTGAGCTGCATTGAGCTCAGGAGCTGATGTAGTCTATTTGCCTTGAAATTCCTCCCTTGGTCACAGCCTACTTAGCAGCACCCTGCTTCTCCTTCTCAAACTCCCCTGGATCTCTATAGAAGTAAAGGCCAAGCATAATTCATTATGAGCACTCACAGGAGGTAGTACTATGCATGAATATAGTACATCCCGGACCAGCATCCATCACATCAGACTCACTGAGTGAGCTCTCTTGTTGTTGCATGAAAGCGCAATGTCCACAT
s HiC_scaffold_1 165882026 351 - 233722169 TCGCTCAAGTGTCTGCAGAACAGCTGAAGACTGTGCAGTGG-GGCTCGAG--TGGTGAGCAGCC---------------------CAGTCCTGAGTGGC-GGCCGGGCCCTGCAGTCTTTAGCAGTGAACTGCTGCATGGG---------CACCTGCCTGGCTGTAGCCCAGTTTGGCACCTCAGGTTGAGTAGC--------CAGTGACTGCCACAGCCCATTT-CCTTGAGATTGCTCCCT-GGTCACAGCCTTCTTGGCAGTGGCCTGCTCTTCCTTTTCAGCCTCTTTGGGAACCCTGTGCACGAAGAGGCCAGGCGTG--------------------------AGCTCCATGGGTG-------------CCACGCCAGCATCCACCACCTC----------AGTGAGCCC-----CTGATGAAGGGGACGGCAGTGTCCACAT

a score=9195
s chr3            21349544 322 + 160039680 AATGTGCAGAGTCAGCTTGAAATGGTTTCAATAGCCTTGAGTGGTAAAT---GCCACAATTGCCCCTGAATAACCCCTGTGGATTTTTCCGTCATAGTTTCCCAGCATCCTATAAATAGACAAAACCATTAGAGTGCTCTGTGACAAACATGCTAGCTGAACTT---TGTCAGGAACAT--TTCAGCTTTTGAGATTAGCTCAGGAAAGGTAAAGTATATTCTAGCTTGGATAAAGT-CATTTGTTCTGACC-ACATTATAGAACCCTATCTTTCTATCTCGAATTTCAGGGATTCACTTGGCCTGGCTGCCAACCAGGGCTGTGCTTCTGT
s HiC_scaffold_1 167577945 328 - 233722169 AACCTGTGGCGTCAGCTTGACATGTCTGTAGCCATCTTGAATTGTAACCCTCACCATAACTGCCCTTGAGTAAATCCGTTTAGATTTTCCAACATAGTTCCCCAGAAAACTATAAATGGACAAAACCGTTAGAGTGGTATATGG-AGACTTAC-ATCCAAACCTTAGTGCTAGGAATGTGCCTTACTCTTTGATATTAGTTTA-GATAAACCATGTTCTTTCTGGCCTGGTCAAGGTACTTTCGTTTTGACCAACATGCCATATGCGTCTGCTTATGTCCCAAATTGTGGGGATTCACCTGATCTTGCTGCTACCTAGGACTGTG-TTCTGT

a score=9301
s chr3            21349550 429 + 160039680 CAGAGTCAGCTTGAAATGGTTTCAATAGCCTTGAGTGGTAAATGCCACAATTGCCCCTGAATAACCCCTGTGGATTTTTCCGTCATAGTTTCCCAGCATCCTATAAATAGACAAAACCATTAGAGTGCTCTGTGACAAACATGCTAGCTGAACTTTG--TCAGGAACATTTCAG--CTTTTGAGATTAGCTCAGGAAAGGTAAAGTATATTCTAGCTTGGATAAAGTCATTTGTTCTGACCACATTATAGAAC--CCTATCTTTCTATCTCGAATTTCAGGGATTCACTTGGCCTGGCTGCCAACCAGGGCTGTGCTTCTGTCTATATAAACCTCTCAAAATATTACACTCTATGAAAATCTCAGGCTACATCTTTGCTCTCTCACTACTCCCTGGAGCTAAGGCTCATGCAACAGAAACAGCTTATTCTAGAAC
s HiC_scaffold_1 134479707 408 - 233722169 CAAATTCAGCTTAACTTGACTGTAACTAGTTTGAGTCATTACTACCATGATTTCCCCAGAATAACCCTGGgcagtttttctttcataatttcccATGA-ACTATAAATAGACAAAATCATTACAGTGGT-TATGCAGAGCTTTACAATTACACTGTGGATCTAGGATGTTTCTGACTCTTTGGTATTATCTTAGGATAAACATGTTAT--CCCAGCTAAGACGAAGTCACTGTTCCTCTCCCC--TACAAATCTGCCCCTCTTTCTGATTCAAACTACAAGGATCCAGTTGGCTTTACTGCCACCCAGGACAATGCTTT--CCTGAGAAAGTCCCCAAGTAAACTGCAATCTG--------TCTGCTTCCTTCTTTGGTCTCACAGTATCTTC-----------CTCATACAATAGGACTGATTTGCTCTAGAAC

a score=3917
s chr3            21349580 103 + 160039680 TTGAGTGGTAAATGCCACAATTGCCCCTGAATAACCCCTGTGGATTTTTCCGTCATAGTTTCCCAGCATCCTATAAATAGACAAAACCATTAGAGTGCTCTGT
s HiC_scaffold_1 220002179 103 - 233722169 TTGAGTTCCATCAGCTATGACTGCACCAAAATAACCTTAGGCAGCTTTTCCCGCACTGTTTACTAGCACACTATAAATAGACAAAACAATTAGAGAGATATGT

a score=6950
s chr3           21421827 371 + 160039680 TCAGAGAAGAAGATTACAAAATGCCTTTCATGATCGTCATTGTTTTTCTTTCAATTCTAGAAATGGGCAACATTTCA-TCTTTGGAGCAGGATAAATGTTTTCACAAGCCTAGCCCAGGAGGGTGGATT-ATAGACCAGAAATGGCTGAAGAAAGCAGAACCAGAAAGTAAAAATAGGCAGGTCATGTCAAAGTCACTTTCCCTGTACAGTCAGAACAAGGAGTCAGAAGGACAGAATAAAA-------GGTTAGCACTATGGTACCTTGGGCTCCTTTTTCTTGTGTGAGGATGAAAGCATTATCCTTCAGTTAAAAACTGTCCATCCTAGAGA-------GCTGTCTCATTTCTCTACAATCCTGTTTTCTCAGAAAGCCAGACA
s HiC_scaffold_1 27260336 343 - 233722169 TCAAAGGACAAAGTTACAACA--ATTTCCAACCTTAGGATGGCTTTATGTTCAATTCTAGAACTGGGCAACACTTCAATCTATAATCTAGAGTAAGTATTCCAACCAGTTGAGCAGAGGAGGTTGGTTTCACAGAC-AGAAAAGGCCGAAGAAAGCAGGAACCAAAACCCAAAGCTAATTGGTCATCTAAAAGCAACTTTCCTCCTA-AGAAGGGAC-AGGAGATGGAAGAACAGATTGGTAACTGATTGATTAATATTGGGCCACTTCGGGCTGC---------------------------------CAG-TAGAAACTGTCCATTTGGGAAATGCCCTTGTCGTCTCCCATTTC-----TCCTGGTTTCTGAGAAGGTCGGATA

a score=8070
s chr3           21578331 198 + 160039680 TCTCTCCTCCTCCTTCCACACT-GTACTGCCTGGATTTGATTTGTTTTTAATTGAATTTTATGAGTCCTAGGCATAAGACAGCTTTGGCTACTAAACCAGGCATCAAGTTAGAATGAATAATGGACTGCCATCTGTTTTGCCTCTGACCGACATAAG---AACACCACTAATAAGGTGcttttctgcccattgctagatgag
s HiC_scaffold_1 37912051 191 - 233722169 TCTTTaatcctccctttttgctcttattgcct---ttttttttttttttcatc-------atgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGggg

a score=6451
s chr3           21583138 240 + 160039680 agAGTGGTTAGAGGCATTTCCCACAACCAACAAAAGGTTTCAGACAGTCTCTGATCTCCTCCTCCAAGAGATCATCCTCTGGTTTGGT--ATTCCAGACTCTCTGCAATCAGACAATGGGCCCAAATTTACTTCCCAAGTTTCTCAAATTCTATCTAAGGCCCTAGACATCTCCTGGTATTTTAATATTCCCTACCATCCACATTCTTCAGGTAAAGTAGAAAGAACTAACTGCTCTTTAAA
s HiC_scaffold_1 25987752 233 - 233722169 AAGGTAAATAGAGGC-CTTCCCACTGCCCAAGAAA------CCACAGATTCTAATATCCTCATACAAGACACTATTCCCCAATTTGGTTGGTCTCAGACTATT--CAGTCGGACAATGATCCAGCCTTTACCTCTCTGATCACTCAGCAGGTATCTTTGAACTTAAACATCTCTTGGCATTTACATATACCGTATCATCCCCAATCCTTGAGAAAAGTTGAAAAGGCAAACAGACTTCTAAA

a score=4130
s chr3            21648436 101 + 160039680 AGATTGCATAACAAGTGTGATCATCAGGGTGA----TATCTGCTCACCTGGATAGAAGAGATGACAATCCTGGGCATTTGCACAAGCTTCCAGCCTTGCCTGAAA
s HiC_scaffold_1 131828719 104 - 233722169 AGATTGCTTC-CAAGTATGACCACCAGGCAGAAGAGGATCTTCGCAATTGGATAGAAGAGGTGACAGGGATGAGCATTGGCACCAACTTCCAGCTGGGTCTGAAA

a score=8720
s chr3            21648592 172 + 160039680 CTTAGTTGGAGAGTATCTGCAACTTTATTAAAACTATGCAGGCTTATGGTATGAAGTCCCATGACATATTTGAAGAAAATGGAGTTTT--------------TGATCCAGGTTCAGACTACACTAGTGGCTCTAGAAGGTCTGGTGTAAAC----------------AAAAGGATTCCATACACCCATTGGCACTG----GCATCA
s HiC_scaffold_1 131830298 204 - 233722169 CCTAGTTGGAAAATATTGGCAACTTCATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACATATTTGAAGCAAATGATCTTTTTGAGAATGGAAACATGACCCAGGTTCAGACCACACTGGTGGCTCTAGCAGGTCTGGTAGGTACATTTCACAGTTGGTTAAAAAAAATTGCCT--GCCCATTGGCGATGAGTTGCATCA

a score=61309
s chr3            21648860 1092 + 160039680 GGATGCTAGCACCAGGTACTAGAAGAGACATCTACAACAAGAAGCTAACATTATAGCCAGTGGATAACTCAACCATTTCTCTACAGACAGATACCAACAAAGTTGCTTCCCCAAAAGGAATAAGCATGTATGGGCTTGGGTGACAACTGTATGACCCCAACTTCTGTGCCTTCCCCACAAAACCTGTCATTCACCATGAAATCCAGGGCACAGGAACAAATGGGTTGGAGATAAATGGTAGTGATTATCAGGCAAAGTATCCCTATGAATATCATGGTGAGTACCTGGATAACTATCCTCAA----------ACAATGACCAGGGCATTGATTATTAGAGTAACACACAGAAGGGCAGTATTTAAGTCCATTGTTTTTATCCAGTGAGACCCAACCTAGCCTTGGGCAATTCTTTTCTTGTGTACCTAAAACACTACTATGCTTATTATACCTTTAAAAAATGCCTTACATATATTCCTTTTCAT-CCTCCTCCATAAATAGTTGCATTTTAGT-CTGGAGCAGTTAAATCCCATAGCATAATCAATATCTTGTCTATGAGGT--AAGGGGATGCTATGAAAGGG-------------CAGACAGTTCT----TTGAAGATCTATGTGTTATTTTACAATCGTATACTTAAGCTAATA-TTTCAAACAATAAGAAACTATGTTTATGTTTTACAGTTTTGTCTGTATCTGTCATGTACACAGAAGACTAAAATCTTGGT--TTGCTAAATGTGGTCTTTGCTAGCCAAATCTAAGATGCAG-AGTTTAGAACCTGACACACTGATGTTTTTCTGTAGTATTGTCTGCTACATTTTAAATGAAGTCACAATCAGTGTGTGTCTGTGATTATATGTGTACTCATTCTCTTCCGTAAGCTGACAAGACCATTTCCAAGTTGCACTTCTAAAGGTGTGTATGCAAAAATGGTCT--CAGACATGTAGGTTTGGGTGGTGTGCCTGCAGA--CTTCATTTGTAACAATGTATCACTGTTGAGTTGCTCTGTTTCCTTCAAGTGTATTTATTGCTGCATTTCTCAGCATAAACTTATATCATTGtattttttataaataaatatttttgaaaa----aataGAAAAGATAGGTTTCTGCTT
s HiC_scaffold_1 131834276 1120 - 233722169 GGATGTTAGCACCAGGTACCAGAAGAGACATCTATGATCAGAAGTTAACATTACAGCCAGTGGACAACTCGACAATTTCCCTACAGATGGGTACCAACAAAGTTGCTTCCCAGAAAGGAATGAGTGTGTATGGGCTTGGGCGGCAAGTGTATGATCCCAAATATTGTGCTGCTCCAACAGAACCTGTCATTCATAATGGAAGCCAAGGCACAGGAACAAATGGGTCGGAAATCAGTGATAGTGATTATCAGGCAGAATACCCAGATGAATACCATGGCGAGTACCAAGATGACTACCCCAGAGATTACCAGTATGGTGACCAAGGCATTGATTATTAGATTCACACAGAGGAGCTCAGTATTT-AGTCAATTGTTTTTATTCAGTGAAAACCAAGCTAGCCTTGAGTAATTTTTATCTTGTCTTCCTAAAACACTATTATGCTTTTCGTACCTAAAAAAAATGCCTTACATACATTCCTTTTTCTGCCTCTTCCCTAAATAGTTGCCTTTTAGTGCTGTAACAGTTAAATCCTACAGCATAACCAGTAACTTGCATATGAAGTAAAAAGGAATACTGTGAAAGGGGAGTACACTTGTACAGCCAGTTCTTTTATTGAAGATCTATGCAT--TTTTACAATCTTACACTTAAACTGGTATTTTCAAACaataggaaattttcttt---ttttacagatTAG--TGTATCTGGTTTCTACATGGAAGACTAAACTGATGCTTATTGCTAAATGTGGTCTTTGCCAACTAAATCTAAGATGCAGCATTTTAGAATTTTACATATCAATG--TTTCTACAGTAttgtttgctaatttttaaataaagtcctGATCAGTGTGCATTTGTGATTATATGTGTACTCATTCTCT----TAAGCTGACAAGATATTTTCAGAGTGGGGTTTCTAAAGGAGCATGTACAAAAATTGGCTTGCAGACATTTAGGTCTGGGTGGTGTGGTTGCAAAATCTTCGTTTGTGCCAATGTATCGTTGTAGAGTTGCTCTGTTT-CTTCAACTGTATTTATTGCTGCATTTCTCAGCATAAACTTATCccattgtattttttataaataaatatttttttgaacATTCATATGAACCACAGGCTGCTTCTT

a score=28176
s chr3            22080396 810 + 160039680 TTACATTTCA-ATTTTTTTCTTTAAAAGGAGTGAGTTGTGTACAGGG----GGTTAAATGCTTTATAGACAAGAAAAAAAACTGTGCTAGAACCAACTTATTCATCATCATCATCTTCA--------tcttcct----------------------------------------cctcttcctcatcctct-------------------------tcatcctcctcatcatcttcctcttcct-----tctTTTTCTTGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCATCAG-TTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTTGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCATAGGGCTGCTTGTCATACACTGCAGTGTTGTTCCACATC--TCTCCTAGTTTCTTTGC---AACATCACCAATGGACAAGCCAGGATGCTTGCCTTTGATTTTGGGGGCGGTACTCAGAACAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACTTCTTTTTGGTCTCCCCTTTGGGGGGGATGTAGGTTTTCATTTCTCTTTCACAACGAGCCTTTTCAGCCTTTGCCATATCTTCAAATTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAACTCTGAGAAGTTGACAGAAGCATCCGGGTGCTTCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCACATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCATGAGGCATAGAGTCGCCCAGT------GTCCGTCCGCTGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTG
s HiC_scaffold_1 118338577 870 - 233722169 ttacatttaatctttttttctttaaaaagagaaacttgAGTGTGGGGAATAGTTTACAtgctttatagatgagaaaaaa--tTGTGCTAGAACCcacttaaatattatattttttcttgagacagggtcctgctatgttgTCCAGGGGCCTTGAATTCTTGGGCTAAAGTGTTCCTTCTACTTTAGTCTCCCCAGTGGCCAGTGTGACCAGTGGAATcatcttctttcttgtctttttcttcctccgTCTCCTcttcttgctttttgcagctCT---CTTCCTTTGTTTGCCTGTATCAGGCTTTCCATTAGCTCAGCATACGGCAAtatcttttctgcatttttccaTCAGCTGAGCAGCCTTCTG-----AAGGCAGCCTGTCACCTGCAGCAGTATTATTCCACCACGTTTTACAATTTTGTTTGTGAGAACACCACCAACGGATAGGCAGGAATGCTCTCCTTTGATT---AGGGGTGAACTGAGGACAGGACAAGAAG---GGTGACAGAGGCCTCTTGCATACCTTAAGTTCCTTGaacttctttttgctttctct----gaGGGAGtttaagcttttgtttttctttc---------ctcatgggcctttgctatgtcttcaggttttcttttctcttttgcagtcCTGGCATGACACCTTACTGAGAACTTCTTAGAAAACTTTGGAAAGTTGAT----GCATT-GACTCTTTCTTCTTGTGCTCCTCATGGCAAGTTTGTAGAAAGAATATACACAATGACACTTT-CTCCTCAGCTTTGTAGGCTGTCCTCTGCCCATGTTTCgttgtttttcctttgtgagGCACAGAGCTGCCCATTCAGCCCTTGCTTGCCCTGGAACTGTCCCTACAGAACTCGAGGTGTTGCAAGGGCTG

a score=12271
s chr3            22348801 220 + 160039680 ttattttattttattttTAGATTTAACAATTAA--GTCAATTTATT----CAGTTGACTTCGTCATCTGCAATGGTGACTTCAACCTCAGCTCCTGGCTCAACACTGATGGAAGTAATCTGCTTAACAGTCTCAGAAGGACTATGTAAATCAATGAGTTGCTTCTGGATCCTCATCTGGAAAGGATCCCATGTCTTGGAACCTTTACCACAAGGTGTTTTTCTGGT
s HiC_scaffold_1 170557109 221 - 233722169 ttcttggatttctttttta-----aacaattgaTTATCGATTTATTAAAATAGTTGCCTTAGGCATCTGTGATGGTGACTCCAACCTCCACTCCTAGCTGCATACTGATGGAAGTAATCCACTTAACAGTCTCAGAAGGGCAGTGCAAATCAATGAGTCACTTGTGGATCCTCGCCTGGAAATGATTCAATGTCTTAGAAACTTCACCAAAAggtgtttttcttgt

a score=11202
s chr3           22348810 309 + 160039680 tttattttTAGATTTAACAATTAA--GTCAATTTATT----CAGTTGACTTCGTCATCTGCAATGGTGACTTCAACCTCAGCTCCTGGCTCAACACTGATGGAAGTAATCTGCTTAACAGTCTCAGAAGGACTATGTAAATCAATGAGTTGCTTCT--GGATCCTCATCTGGAAAGGATCCCATGTCTTGGAACCTTTACCACAAGGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCTGGTAGTGATTCTCAATGTCTTGGTAGGCATGTGCACCTATCCTTTCACTTTCAGATTCTTGTCTTTTATGCCTCTGATCAAGTCCACACAAACCTTCGCCA
s HiC_scaffold_1 37918115 476 - 233722169 ttttttttt---cccaacaattgattatcattttattaaaacagtTGCTATAGGAATCTGCAATGGTGATTTTAACCTCTACTGTTGCCTCAGTACTGATGGAAGTAATTTGTTTAACAATCTCAAAAGGactatgcaaatcagtaagtCACTTATAAAGATGCTCATCTAGAAATGACCCCATGTCTTGGAACCTTTGCTGCAAGGTGTTTCTGGGGTCTGTTTGTTTTCAAacagtctctctatgcagtgaaggctggctttgaatttgcttatgtagcctaaattggccttgaactcgtggcatgcctcctgtctcagcctcccttgtactgggatcacaagtgtgcatcaccatacccagtAGGGCATTTTTCTTGTAATGATTCTCAAGGTCTTAGTAGGCAAGCAAATGAATCCTTTCACTTgtagattctttttctttgcccCTCTGATCAAGTCAGGACACAGCTTCacca

a score=6190
s chr3           22349443 258 + 160039680 atttcctcaactgaagctcctttctctgtgatatctccagctgtgtcaagttgacacaacactagccagtacaGCCAGTGACTTCACACTGTGGCTGTTGAGCATGATTCGAATTTGGTGAATCGACACTTCAGGCTCCATAGACATCTTTCTGGTATCTTTAAATGTCATGGCTGAGGGTATCTTTAAACACCATGGCTGAGCTGCAGCTTACTGACTGACTTTTTCCTCAGCAGGAACAAACAGCGGTGAGTCAGG
s HiC_scaffold_1 37918528 217 - 233722169 ATCCTTTCACTTgtagattctttttctttg-----cccCTCTG-ATCAAGTCAGGACA--------CAGCTTCaccataaatttcattttatggcTGCTGAGGTTAATCCTAATTCGGTGAATTGTAACCTCGGGTGCCATGAGTGTCTTTCCAATATCTTTAAAAGCCATGGT--------------AGCAGTGTGGGT-------------CTGACTAACTTGTTCCTTGGCAAGAGGGACCAGCAGTGAGTCAGG

a score=7458
s chr3            24141830 155 + 160039680 ATAAGAAGCACTATTTGAGAATTAA-CAGGAACATGTTTTTAAGTTTTGCAAATAAA-------TCCAGTGTAACTAACTATACCTT-CAGAAAGTATTGATAAGCAGCTCTTCAGAACCGCTATTTACTGCAGACTTTTGAGGTTATTGTTGGAACCACACAA
s HiC_scaffold_1 105728266 164 - 233722169 ATAACAAGCACCATTTGAGaattaaacagaaacatttttttgaaCATTTCAGACGAACTCAACTTTCAGTATAACTAACTGTACCTAATCTAAAGTATTTATAAAGAGCTCTTCGGAGCCCCTCTTTGTCATAGACTTTTGAGTTGATTGTTGGGAACACACAA

a score=11332
s chr3            24333256 303 + 160039680 AAGAGGAACCAGAGCTTCTGCCCAACAGTCAACCTGGATAAACTGTGGACATTGGTCAGCGAGCAGACACGGGTCAATGCGGCAAAAAACAAGACTGGAGTTGCTCCCATCATTGATGTTGTTCGATCAGGCTACTACAAAGTTCTGGGCAAGGGAAAGCTCCCTAAGCAACCTGTCATCGTGAAGGCCAAATTCTTCAGCAGAAGAGCTGAGGAGAAGATTAAGGGT-------GTTGGAGGTGCCTGTGTTCTGGTGGCTTAAAAGCCACAC---CGGAGGTTAATTAAATGCT-----AACATTTTCCaaaaaaa
s HiC_scaffold_1 215599758 314 - 233722169 AAAGGGAGGCTGAACTTCTGCCCAGCTGTTGATCGTGATGAATTGCATCGTTTGAGTAGTGAGCAGACACTGGCAAATGCTGCCAGAAAGAAGACCAGAGCTGCTCCCACCATTGATGTGGCACAATCCAGATGCTGCAAAGTTCTAGGAGAGGCAAAGTCCCCAAAGCAGCCTGTCACAGTGAAGCCCAAATTCTTCAGGAAGAGA---GATCAGAAGATTaagggggaaaagagagagaaatagacatGTCCTGGTGACTT-GTAGCCAAATGGAGGGAagttatataaatgttttaaaaaagcttttcaaaACAA

a score=3936
s chr3           24533902 141 + 160039680 AGGTGATTTTTGCATAACATGAAAGCTTAGA---CTTATAGATACTGTGGTAGCTTCACAGTCCATTATCAGTACAGACTCATAGGACCACCATGGTATGTACAGTCTATTGTTAGCTGAAATCTCATTATGTAGCACCAGACT
s HiC_scaffold_1 72077615 138 - 233722169 AGGTAATTTTGTCAT--CGTGTAATCATAGAAAATGCATAAGTA----GCTGGCTACAACATCCCTCAGTGATACGATCTTACGGGACCATTGTGATATATATGGTCCATCATTAACTGAAATGTCATTATACAGCATGTGACT

a score=4563
s chr3           27064161 142 + 160039680 GCTGGAAAACGCCTGG-----AGTGGTGTCATAGTCATCACAGGCACAGAGCACAATGAGTGCCTCCTCCCACATCTGTAATGATGCAGCTATGCACATCTCTACTTCTCTGCCAGTCACATGAAAGTGTAGTACACAGAATTCTAT
s HiC_scaffold_1 50351208 144 - 233722169 GCTGAAAAATTCTTGTCGCCTAGTGCTGTTGTAGCCATCATAATGCCATAATGCAACACAT---TATTCACATATTTGTCATGATGCTGGTATAAACAAACCTACCATGCTACCAGTCATATGAAAGTATAGCACACACAATTATGT

a score=4335
s chr3            27064240 269 + 160039680 TGCAGCTATGCACATCTCTACTTCTCTGCCAGTCACATGAAAGTGTAGTACACAGAATTCTAT-TAGATGAT---AAGAAATGACATTTATGGATAG-------TATACTATCCATCCTATACTATCCATACACTATGCCTTACTTTGATCATTATTTTAAAGTAGATTACTAACTTTTTTTTTAC--ACATTTACTGT----TACTACGTTAGATTTTCCCAGGAGCAATCCCACACATCGCTTATTTACTGAGTCTCTTGATTGCATCAAGAGACAATGTCAAG
s HiC_scaffold_1 112186023 274 - 233722169 TGCTGGTATAAGCAAATGTGCTTTACTTCTAATCATAGGAAAATATAGCCCATACAATTACATATACTTGATCCAAATACAAGATACCAATGAAAAtgaatgaccatattactgatt-tatg-tatttataccttata---tgttttaatgtttattagaATGTA-------ATCCTTCTACTTactaaaaaatactataaaacaatATGCCACATTACTCCAGCATCAGCCTCATAAATCTTGTGTTTACTGTGTCTCTTGGTTGCATCAAAGGGCCATATCAAG

a score=4605
s chr3            27243163 207 + 160039680 TTTAAACCTATTGTGTGAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTA-TGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGAAAACCCTGGATATTCTGGTCCTGAGTTGTTCAGATGAGGGAGAGCCAACCTATAGTTT
s HiC_scaffold_1 102037150 196 - 233722169 TCTAAGAATGTTGTGGAAAGTTAACTTCAGGCTACGTGCATAATGCAAACATGAAACAGAGATGAATTTCATGCTTAGATATGGTTCCCATGCCCAAGATATCTCATGACTGTGTGt---------gtattccaaaatctgaaaaa---gaattataaaacatcTCTGACCTGAGCACTTCAGATATGGGATCCTcaactttttattt

a score=5470
s chr3           27243165 219 + 160039680 TAAACCTATTGTGTGAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTATGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGAAAACCCTGGA-TATTCTGGTCCTGAGTTGTTCAGATGAGGGAGAGCCAACCTATAGT-TTAACAGCTTAGGTAA
s HiC_scaffold_1 87972531 209 - 233722169 TAGAACTATTGAATAAAGTTACCTTGAGAATATGCATATAAGATGTATATAAACTATAAATGAATCTCATATTTAGGTGTTGGTACCATCCTGAAACTATTTCACTATG-----------CAAATATTGCAAAATCCAAAAAGATTCAAAATTTGTAGCACTTTTGGCTCCAG-TATTTGGATAAGGAatatttaatttgcattattaTTCACCTAGGTGA

a score=5037
s chr3           27243171 195 + 160039680 TATTGTGTGAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTATGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGA----AAACCCTGGATA-TTCTGGTCCTGAGTTGTTCAGATGAGGGAGAGCCAACCTATA
s HiC_scaffold_1 55285522 182 - 233722169 TATTGTATGAAATAACCTTCAGATTATGTGTAAAAGGTATATATAGAGCACAGGTGAGTTTCAGGGTTAGGCTTTGGTCCTATTCTCGAGAT-CCTCATTATGtacatta----caaa-------------aagaaaataagctggAGCCCAAAATACTTCTAGGTCTCAACATTTCAGATAAAAGATACTCAACCTGTA

a score=4804
s chr3            27243171 231 + 160039680 TATTGTGTGAAGCTACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTATGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGAAAACCCTGGATATTCTGGTCCTGAGTTGTTCAGATGAGGGAGAGCCAACCTATAGTTTAACAGCTTAGGTAAGACTCACTCTGCCCATGC
s HiC_scaffold_1 168551829 211 - 233722169 TGTTGTATGAAACTACTCCCAGGCTATGTGTGCAGGTTGTATATGAAGCATACATGACTTTTATATTTAGACATGAGTCCCATCTACAGAATACATCATTATACATATGCA-------------AATACCACAAAAGATAAAATCTGAAGCACTTCTAAACAAAAG-CGTTTTGATGAAGGGATACCAACCTG------AATAGCACTTATAATACTCATCTTATCTTTAC

a score=5133
s chr3           27243184 179 + 160039680 TACCCTCAGGCTATGTAGATCAGATGTATAAAAAGCACAAATGAATATCTCAATTACATTTGGGTTCCATTCTCAAGATATTTTATTATGTATATTCAATTCAAATATTCTAATGTCTAGAAAAATGAAAACCCTGGATA---TTCTGGTCCTGAGTTGTTCAGATGAGGGAGAGCCAACCT
s HiC_scaffold_1 11745909 177 - 233722169 TGCTTTCAGGTTATGTGTATAAGGTGCATGTAAAACATAAATGGGTTTCCTGTTTAGATTAGGGCTCCATCCCCAAGATACTGAATTATATGT-----GTACAAATATTCCCACATCCAAAACAAATCAGACATTCAAAATACTTCTGGTCCCAAACATGTAAGCTAATGGGCATTCAACCT

a score=8022
s chr3           27252597 173 + 160039680 GTACATTGTATTTTTTTAAAAAAGAAAAAGAGAAAAGCAAATATACAACTCAGAATGGATTTGAGGCAAATTGTACCACAGCAGATTTTCTCTGAATGTTCTCTAAACAAAGCTTAAAACACAAATAATAATAAAAGAAAATGTTTCTGATGTAAGAGCAGCAGGGCAAAAAA
s HiC_scaffold_1 29135815 159 - 233722169 gtaacttttgtttttttatcagaaAA-----------CAAATATACAACTTGGAATGGATTTGAGGCAAATTGTGTCATAATCATACTTTTCTAAGTG---GctaaacaaagtttaaaaatcaagtaaaaataagagaaaatgtttcTGATATGAGACCAGCAGTACAAAAAA

a score=6534
s chr3            27276091 311 + 160039680 TTGAGTAGCCTTTGTTCAAAATAC--AGAAGCAGTAGGATTTAGATTG--TTTTCAAAGGTTTGAGAATTTGCATATGCATAATGAGGCACCTTTGAGGCAAGACCTGAATCCAAATGTGAAGTCTGTTTATCTGGTCATATTCATCTTACACACACAATCTGGTCAAGGTTCTAATTAGATTTTTTTG-------GTGTTAGCTGCAGCCCATTATATCAGACCAGGTCTGGAATTTCCCACTTGTAACATAGTATCAGTGCTCAAACAGTTTCAGAATGGGAAATAGGATTTCAGAGTTTTGGATTAGGGACATTCAGCC
s HiC_scaffold_1 213556965 310 - 233722169 TTGGGTAAACTTTATCCAAAATGCTCAGGACTAGAagtattttgagttatttttcagatttttgaattttcatatatatatagtgagaAATCTTAGTGATGACACC---GTCTAAACACAAATTCATGTaagtt--tcatatattctatacgCATAGCATAAAGGTAATTTTGTAAT-GTATTTTTGTGCATCTGTATTTTGACTATAGTCTCTCACATGAAATCAAGTACAGCATTTTCTACTTGTAGCATCATGTCAGTGCTCAGACAGTTTCTGCTT------TTGGAGTTTAGATTTCTGAATTAGCAATGCTCAATC

a score=7819
s chr3           27276091 322 + 160039680 TTGAGTAGCCTTT-GTTCAAAAT--------ACAGAAGCAGTAGGATTTAGATTGTTTTCAAA--GGTTTGAGAATTTGCATATG----CATAATGAGGCACCTTTGAGGCAAGACCTGAATCCAAATGTGAAGTCTGTTTATCTGGTCATATTCATCTTACACACACAATCTGGTCAAGGTTCTAATTAGATTTTTTTGGTGTTAGCTGCAGCCCATTATATCAGACCAGGTCTGGAATTTCCCACTTGTAACATAGTATCAGTGCTCAAA--CAGTTTCAGAATGGGAAA--TAGGATTTCAGAGTTTTGGATTAGGGACATTCAGCCA-TATTGTAGTA
s HiC_scaffold_1 13384312 339 - 233722169 TTGAGcatccttttatttaaaatgcttggCAACAAAAATACTTCTAatttagtagtttttaaaaagagtcaGGAATATCTGTATGTATACATGATGAGCTACTTTAGGGATGAGACTCaaatctaaacatgaaattcatttatatt-tcatgtacACTTTACACACAaggcctgaaggtaatttta--cacAATGGTTTAATTTTGACTGTAATCCATCACATAAGGCCAGGTATGGAATTTTTCACTTGTGGCATCATGCCAGTGATCAAAACTATTTACAGTTTGGAACACTTCATGTTTTAGATTTTCAGATCAAGAATGTCTAACTAGTATTGCAATA

a score=5419
s chr3           27286230 205 + 160039680 CTCATCCCTGCTCACACTCCTAACTCATCCCTGCTCACACTCCTAACTCATCCCTGCCCTCACTCCTAACTCATCCCTGCTCACACTCCTAACTCATCCCTGCTCACACTCCTAACTCATCCCTGCCCTCACTCCTAACTCATCCCTGC---TCACACTCCTAACTCATCCCTGCTCACACTCGTCACGCCTGCCC-----CAGGTTCCACAT
s HiC_scaffold_1 38611844 202 - 233722169 CCTATATCTGCCCTCACACTTGCCTTACACCTGCCC-----------TCACATCTGCCCTCACACCTGCCCCGCACCTGCCCTCACACCTGCCCTACACCTGCCCTCACACCTGCCCTATACCTGCCCTCACACCTGCCCAACACCTGCCCTTCACCTGCCCCACACCTGCCTTCTCACCTGCCATGCACCTGCCCTCACACCTGTCCCACAT

a score=4429
s chr3            27737599 171 + 160039680 aGAAACAATGTAAA----TTTGTTGGGTTGGCTTACAGCGTGATGGGCATT----CCAACAGTGGCCA----CAGA--GAAGA---AGAGAACCCAGGAGCTACTCAACTGATGAAATGAAAGCCCAGAGAAAGAAGGAGTGGGAAAATGGCCCCTGCCAGATGTTGAAGGCCTGAAGGCCCCCTGGA
s HiC_scaffold_1 230018030 186 - 233722169 aaaaactatgcaaGGGAGTTTATTAGGTAGG--TACAGGATCAAAGGCAGGAGAGCCCCCTGTGGCCATCCACAGATGGAAAATTCAGAGAACCCAGGAGCTTCTCAGCTCGAGAATTGGGACACTGCAGAAAAGAGGGTCAAGGATGAAGCTCCAGTCCAAGGTTGAAGGCCTGGAAGTTCCCTGGA

a score=3926
s chr3            27798535 111 + 160039680 GAATGTCTGTGCTATGGTGTGGCTGTGACTTGTCTCCTAAAGATTGATGTGTCAGAAGCTTGATTCAGAGAATAGTGACACTGATAGGCAGTGGACTTCTTA---------AAAGGTAAG
s HiC_scaffold_1 223578237 120 - 233722169 GAGTGTATTTACTATGTTTTAGATATGATTTTTCCCCAAAAAATGCATGTGCTAGAAGCATGGCCTTTAATGCAGTGATACTGAAAGCCAGTGAAATGCTTAAGGAGGTTTAAAGGTAAG

a score=18382
s chr3            28245442 327 + 160039680 caaataaGCTTTTTCCCCTCTAGCGCAGCCGACTCTGCAGGTCTGTGTGGAGCTGCGGTTGCGGGTCTCTGTTTCG--CAGGATGGGGTTCGTGAAAGTTGTCAAGAATAAGGCCTACTTTAAAAGATACCAAGTGAGATTTTGAAGGCGGTGAGAGGGTAAAACTGACTACTATGCTCGGGAACGATTGGTGATCCAGGACAAGAATAAGTACAACACACCCAAATATAGGATGATAGTTCATGTAACTAAGAGAGATGTCATCTGCCAGATTGCATATGACCGTATAGAAGGGGATATGATCGTCTGTGCAGCATCTGCACATGAAC
s HiC_scaffold_1 139440458 325 - 233722169 caaaaaatctTTTCCCCCTGTGGCATTTCTGGGCCAGCAGGTCTGTGCAGAGCCATGGGTGCAGGTCTCTATTTTATACAGGATGGGTTTTGTTAAAGTTGTCAAGAATAAGGCCT-CTTTAAGAGATACCAAGTGAAGTTTagaagaca---agagggaaaaaCTGATTGCTATGCTGAGAAATGCTTGGTGATCCAGGACAAAAATAAGTAcaacacacctaaacacaagATGATACTTTGTATAACTAACAGAGATACCATTTTTCAGATCACTTATGCCCATATTAAAGGGGATCTAATAGTCTGCGTAGCATATGTACATGAAC

a score=4799
s chr3           28560451 173 + 160039680 TTTAAACAATGCTGTGCAGCCACCTGCTACATAATAAAATTCGGGTTAGCAATGGACTCCATGTATGACAGTGGTGCCTTAAGACTGAACCACCTGGTGCCTCTGCAGCCATGTTGGCAGGAGCAGATAGGTTCTATGATGTTCCCATAATGACAAAGT------------CATCTTTCAAACTC
s HiC_scaffold_1 57696919 179 - 233722169 TTTAATCAAT----TATAGTTATGTGCTGCATAAAGACTTTTTGATTCA-GATGGACCTCAT-TATGATGGTGATCCTATAAGACTGTATTGCTTAATGATATCCTAGCTATCTTAGTATGTGTAAGTATGTTCTATGATGTTTCTACAATAACAAAATTACTTAATAGCACATTTTTCTAACTC

a score=6266
s chr3            29926540 165 + 160039680 TAGCTGAATATTTGATGTCCTGA-------TGTCGGAAACTCATTGAGGTGGATGATGACTGCAAGCTACACACATTTTATGAGAAATGCATGGCCTCAGAAGCAGCAGCTGATGCTCTGGGTGAACAGT----GCCAAGGGTTATATGGTTCAAATCA-----------GTAGTGTGAATAAGGAA
s HiC_scaffold_1 154206192 186 - 233722169 TAGCTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGGTAAAAGTTAAACTG-TCGAATCATTGTGCCTATTGTAGTGAGAAAGAGTAA

a score=9607
s chr3            29926544 350 + 160039680 TGAATATTTGATGTCCTGATGT------CGGAAACTCATTGAGGTGGATGATGACTGCAAGC------------TACACACA------TTTTATGAGAAATGCATGGCCT--------------CAGAAGCAGCAGCTGATGCTCTGGGTGAACAGTGCCAAGGGTTATATGGTTCAAATCAGTAGTGTGAATAAGGAACAAGGGTATCCCATGAACCAGGATGTCTGGCTATATGGCAGAGTGTACCTGCTATTGATTGACTAAGGAGTATTCTTGTTACAAATCATAGAGAATTGGAGAGAGAAAGTGCTAGTCTACTCTGGG-TGTGTT-TGAATACCAATCTAAGTGTTCTGAACTTGGGTATTATTTTTTGGAAAAAAGGAGAGG
s HiC_scaffold_1 154206571 377 - 233722169 TAAATATTTGTCATCTTAATGTTATAACCAGTAAAACACTGAAGTGGTAAATGAATGAAAGGAAATCGGAAATGTAAGCTCAAAATGGCTTTACCAAGAATTCAGTGTCCAGTAAATTTTGGAATAGAAATAGTAAATGTGGCCTTGTGTACTCA---TCCAGGGTTATGTGGTCCGGATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAG----CAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTtggttattgt------aaaaaaaggTGAGG

a score=4722
s chr3            29927726 89 + 160039680 gaggaagaagaacactc-----ctccaATCTCTCTGAAGAAGATAATGTCTGACAAAATGCTGTCAGCAAACTCTTAAACAAAGAAAGCAGAAG
s HiC_scaffold_1 154207178 94 - 233722169 GAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGTAAAAG

a score=12085
s chr3            30561616 525 + 160039680 TTTTTTGACTGTTGGAGTCCTTTATTTCTTTTTGTACAACAGGCTATGCAACGGGCTCC---------------AGTAGCTCCGGCTCCTTCCGGT---TCCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCT---TCTGATTCT--TTCTG--TCACCTGTTTCAGG-AGCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACAC-----ATAGGGAGCGCCCCTCCTCTTGCCC-CTTTGTGTCTGTTATTTTGACGAGTTA
s HiC_scaffold_1 214914726 517 - 233722169 tttctttatagtttagtctctctctctctttttttttcatctactATGCTGTGGGTTCATAGGGAATAGATTTAGGTATTTCAGGCTTCTTTCCATCAATTCTGACAACATGTGCTTCACTGAGCAG------------ATCAGACTGGTGCATCTGTTGAACCCAGGT-AAGTTCCTCTTGGattttctaccttttattttaattttgctttatgtGTTTCAAGTAACTATTTTGACTCCT--AGTGCTTCACATGATAAATATACACATTTAGTCACCTGGCAAATATCTTGCCCTTAATCTGATGGTTTACAACAATGTGC----------------TGCTATAGAGGCTTCCAGTTTTGC-ACATTAATATTTATAGGgactttctttttgaacagtatCTATTCCCTTAATCTCTAAATTATCGCCTTTCTTGTAGATTCACATATATGTGAACAGAGGAAAAACCTCATATTTCCTAAAAGGCTTAGAAGACACAATCAATAG---------CTCTCTTTACCCTCTTCATGTGTGTCATTTTGGCAGGTTA

a score=19212
s chr3            30561665 527 + 160039680 AACGGGCTCCAGTAGCTCCGGCTCCTTCCGGTTC-CTCTCAAA-GCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTTCTGATTCT-------TTCTGTCACCTGTTTCAGGA-GCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTT-CCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAAAGTGGCTGCCAGTATGAAAAGCAGTATTTCCTTCTTTAAAATAC
s HiC_scaffold_1 215432026 524 - 233722169 AATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCAAAAGTGTGCTTCTCTGTGTGG-----GTG---GGGCCAGCTGGTGCTTCCGTTGAACCCAGGT-ATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAGAACCAA-TCCCTTGATGTCTACGATATCACTCT--TTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTT-TCTCTTTGTGTTTGTCATTTTGGAAAATT-ACTGGAAGATGACAGTTCTAGCCAAAAG-GTTGTTTCCTCTTAAACAATAC

a score=18530
s chr3           30561665 497 + 160039680 AACGGGCTCCAGTAGCTCCGGCTCCTTCCGGTT---CCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTT------CTGATT-CTTTCTGTCACCTGTTTCAGGA-GCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCT-TGTAGATTCTCATGTAT--GTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAG-GGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAA---AGTGGCTGCCAGTA
s HiC_scaffold_1 59695645 495 - 233722169 AAAAGGTTCTGACAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGT------------GAAGCAGGCTAGCGCTTCAGTTGAATCCAGGT-AcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAACGCT--GAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACTTGTTTACT----GTAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctt-tccctttgtgtTTGTCATTTTGGCAAATT-ACTGGAAGACAGTGGTTGCAGATA

a score=19946
s chr3            30561665 488 + 160039680 AACGGGCTCCAGTAGCTCCGGCTCCTTCCGGTTC--CTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTTCTGATTC-------TTTCTGTCACCTGTTTCAGGA-GCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAAAGTGG
s HiC_scaffold_1 172799177 484 - 233722169 AATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGTTCACAAAGCTTGCTTCTCTGGG------------AGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGT-ACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTACCCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctt-tccctttgtcTTCATCATTTTGGCAAATT-ACTGGAAGATGG

a score=11915
s chr3            30561672 466 + 160039680 TCCAGTAGCTCCGGCTCCTTCCGGTT---CCTCTCAAAGCATACATCTCTGGGTAGCAGAGGTGCAGGAGCAGGCTGGCACCTGAGCTGAGCCCAGGTTGCCTTTCCCTTTGGCGCTCTTCTGATTCTTT-CTGTCACCTGTTTCAGG-AGCTGTCTCTGCTCTTCGAGTGCTTGATGTATTCAATAGGCACACTGATTCTCTTGGCAAGAATCT-GCCCTTAACTTGCCTGCTTCCAATGATGTGCATGGCTTGCTGGGTGACATTGTAGACGCTTCCGGTTTTGCCAAGGTAACACATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAA---------------------------------------------------------------------------------------------------------------------------------------------------------TATCACCCTTCTTGTAGATTCTCATGTATGTGGCCAAAGGAACAACTCCGTGTTTCCTAAAAGACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAG
s HiC_scaffold_1 181454021 592 - 233722169 TCCAGCAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAG------------GGCGGGCTGGTGCTTTAGTTGAACCCAGGCTTCCTTCT----------TTTTCAGATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGCAAGTGTCTTACCCTTTACTTGCTTGTTTCCAGCTGTGCCAGCGGCATGCTGGGTAACACTGGACACTCTTCCTGTTTTGCCATGGTGACATTTGTGTGACATTCTTTTT-----TGCACAG--TCCCTTGATGTCTACAAAATCACTCTTTttggtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtggtaccaggaatcgaactcacgacctcaagcttgccaggcaggcgcttgtgctgctgagctaaactgcTGTCACCCTGTTTGTAGAATTGCATGTCTGTGGCCAAGGGGACAAC-CCATGATT--TAAAAGGCCTAGAGAACACACGCCAGGTTCCCCTCCTCTT-TGCCTTTGTGTTCATCATTTTGGCAAG

a score=10037
s chr3           30561963 190 + 160039680 CATATGATGCATTACTTTTTCAGCTGTACCGATTCCCGTGGTGTCTACAATA-TCACCCTTCTTGTAGATTCTCATGTATGTGG-CCAAAGGAACAACTCCGTGTTTCCTAAAA-GACCTAGAGAACACATAGGGAGCGCCCCTCCTCTTGCCCCTTTGTGTCTGTTATTTTGACGAGTTAACTGGAAAGTGG
s HiC_scaffold_1 52692576 182 - 233722169 CATGAGATTCACTAC----------ATACCCATTCCCTTGATGTCTACAAAAATCACCCTTTTTGTAGATTCGCATGTATGTGGGCCAAAGGAACAACTCCATGTTTTCTAAAAAGGCCTAGAGAACGTATACTGGGTTCCCCTCCTCTTTTCCCTTTGTGTTCGTCATTTTGGCGAATT-ACTGGAAAATGG

a score=9454
s chr3           30571120 397 + 160039680 AAGATACAGAAGAATACAGTT-GAGAGGCTACTTGGAAGAGCATGGCA-------------------TGGAAGTCAGGCAGAGTGAGGAAAAGAGAGGATTTGCTTTTATAACTGT--------------------------ATTTTTTTTATGTTATA----------------------TGTATGAGTG--------TTTTGCTCAC----AGCTCATGCCTG-TGCCT----------------GGTAAATCAGGCAACTTTATGGCTCATGGTGGAAACTTTGGAGGTGGTGGAGGTAATTT-AGTCATGGTGCAAACTTTAGTAGAAGAGGAGGCTAtgat-agtggtactgtctgtggcagtagtggtagttgtgtaggtggtaatggtgagtataatggatttggaggtgatggtggcagctatggtgccagtcctggttacagtagtagaggaggctgtagtgatcctggtTAAAGTGATAGAGGAAG
s HiC_scaffold_1 69607871 461 - 233722169 AAGATACAGAAGAATTCAATTTGAGAGACTACTTTGAAAAGTATAGCAATGGAAACCATAGAAGTTATGGGAGATGGGCAGAG---GGGAAAAACAGGATTTGCTTTTGTAACTTTTGATGGCCATGATAATAGTTGATAAAATTGTTATTCAGAAATACCACACTATTAATCCACACAATTGTGGAAGTGAAAAAAGCCTTTCCTAAACAAGAGGTGCTGTCTGCTGGATCATGAGAGGTTATGGAGGTGGATCTGGCAACTTTATGGATTGTGGAAGAAATTCTGGAGGTGATGGAAGGAATTTCAGCCATGATG---------------GAAGAGACCATGATGGGTGGTACAGGAGATGAAAACAGAGGTAGTTATGGAAGAGGTGATGGTGAATATA----------AGGTGATGGTGGAAGCTATGGTGGAAGCCCTGGTCAGGATAT----GGAAACCAAAGTG---TTGGATACGGTAGTAGAGGAAG

a score=4664
s chr3           30597870 849 + 160039680 TCTTCAAATTCTGCAGCCGTGATCCACATGTCTTGGAAGGCAGACAAGGAGGCAAGAATAGAACCCCCCATCCACACTGATATTTTCCTTTCCGGGGGAGCTATAACCTGTACGGCAGTATTGGCAGGTGCCAGCTTTGCCACATCCTTAATGAGTCGCTTATCTAAACCAGGAAAAGACGTTGATCCTCCCGAAAGGATGATATTGGAGAAGAAGGAGTTCCTGAGATCTGTATCACATTTCATTATGCTGCCGAAGCA--CATCTTGTCGATGCCCGGAGCATCAAC--------ATTCACAAGATATGGAGAAAAGAGGGCCTCTGGGCAATGAAATAACTGCTTATGGAGTTTGACAGTCTTTCCATCAGGCAGGGTGTA---------TATTTTCTCTAGGTTAGAGTCCTTGGTCATTTCATCTTCATAGTTCATCGCCACATAACAAGCATTCTCTTTAATG---TCTGTAACAACCTTCCTGTCCCCGGTTCTAAGCAGCATGATACCATCACCCTTCAACAACATCATGAGGTAGCTGGTGAGGTCAGATCCTGCCACATTTAGCTGTTTTACACCATGAGA-------TAGGCAGTAACCCTCAAAGATGGGCAC----------ACACTGAGTAATCCCAGCTCCTGAATTCAGCACCAGGCCAGTAGTAAAGCCAGCAGCGAAGAGAGCCAACACCGCCTGGGCGGACATGTAGAAGGCAGGGACTCCCAGATTCTCAAAAAACACTTCGGAGATGTGTTGCCGGTCTGCCAGT-GGATTCAGCGCAGGTTCTGTAACCAAGACCGGGCCATCACTGGCGTTCAGGTTCAGGTTGTAGTCATAGATATGCTTCCACATGATCTCCATGTCCCCCCAG
s HiC_scaffold_1 69236163 846 - 233722169 TCCTCGAACTCTTCCTTGCTGACCCAGAGCTGCTGAAAGGCCTCCAAGGAGGCCAGAATGGAGCCGCCAGTCCACACGGAGGTCTTCCTCTC---GGGACCAGCGGCCACAATGGGGCTGTCCTCGGGGCACAGGAGGCTCAGCTCCCTCTGGAAGCGTTCGGGGAAGCCGTCCAGCATGGTGCAGCCGCCGCACAGCAGCACGTTGATGGCCATCTCCTCCCTGAAGCCCGC------TTCCTCGCAGCGGTccaggcaggcagc-tgtgagCGCAGGGAGGCTGGGCTGGCTGCAGCCCACCAGGGAGGGCTTGAAGAGCATCTCGGAGCAGCGAAAGCGCTCCTGGCTGATGGTGATAATCTTGCCGTCGGGGAGTTCATAGTCCAAGCGCAGCTCCTCCAGGCCCAGCTGC---------TCCTCTTCCGGCAGGAGGGCCGCGTAGCAGCATTTCTTCTTGATGTGCTCTATGATGTGCAGATGGTCGTCCGTG------AACTTGTGGCCGCCCTCGTTGAGCAGCTGCATCAGGTAGTTGGTGAGGTCGCTGCCCG-CGTAGTCAGC------GCGGCAGGTGAGGCCCGGGAGCACGTCGCCCTGGGAGATGGGCACCACGTGCGAGACGCTGTG-----CCCGCTC-----TCCACCACCAGCCCCGTGGTCCTGCCGTAGGAGTAGACGGAGAGCAGCGCCTGGGACGTCACGTGCATGGCGGGGATGCCGAAGGTCTCGAACAGCAGCTCCGCGTACTTCTCTCGGT-TGCTGGTGGGGCTGAGCGGGGGGTCGGAGACCAGCACGGGGTGCTCCTCGGGGCAGATCTTCATGGCCGTGTAGAAGATGTACTCCCAGATGCTCTGGACGCAGTCCCAG

a score=4170
s chr3           31039011 93 + 160039680 TTCTTGCCTCTTCTCAGG-----TTGTTTTTTGTCATAGAATATGTAAATGGAGGGGACCTCATGTTTCATATGCAGCGACAGAGAAAACTTCCTGAA
s HiC_scaffold_1 30041115 98 - 233722169 ttcttctctcctttcaggATCGCCTCTTTTTTGTCATGGAGTATGTCAACGGTGGAGACCTCATGTTCCAGATTCAGCGCTCCCGAAAATTCGATGAA

a score=4251
s chr3           31039424 103 + 160039680 TTATAGAGATTTGAAGTTGGACAATGTACTGCTAGACTCTGAAGGACACATTAAACTCACTGACTACGGCATGTGTAAGGTGAGAGACCCCCTGGATGGCTTG
s HiC_scaffold_1 30090190 100 - 233722169 TTACAGGGATTTGAAACTGGACAACATCCTTCTAGATGCAGAAGGCCACTGCAAACTGGCTGACTTTGGGATGTGCAAGG-AAGGGA--TTCTGAATGGCGTG

a score=3567
s chr3            31041443 76 + 160039680 AGGATTGCGGCCTGGAGACACAACCAGCACTTTCTGCGGCACTCCCAATTACATTGCTCCAGAGATCTTAAGAGGA
s HiC_scaffold_1 104798219 76 - 233722169 AGGAATGGGATATGGAGATAGAACAAGCACCTTTTGTGGCACTCCTGAATTCCTTGCCCCAGAAGTATTAACAGAA

a score=3677
s chr3           31043689 76 + 160039680 GGCTTCAGCGTTGACTGGTGGGCTCTTGGAGTGCTTATGTTTGAGATGATGGCGGGAAGGTCTCCGTTTGATATCG
s HiC_scaffold_1 30094742 76 - 233722169 GGCCCCTCTGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGATGATGGCTGGGCAGCCCCCCTTTGAGGCCG

a score=9122
s chr3            31238947 627 + 160039680 TTTATGTATAGGCACATATCACTGAGTGATGGGGACATGGTCTGTGAAATGTGTTATTAGGTAACTTCCTTGCAGTGAGAGTGCTATGGTGTGCTTGTACAAACCTAGTTG----GAATAGCTTGCTACATACCTAGGCTATAA-----ACCTATATACGCCATGCAGATACACACACCTGAATAAACATGCATCACTCAGGTCACTACTCTGAGGGCCATGATGAATGAATGAAATGCAGGAGAAAACTCTAGCAGG-----AAGAGACACAATGAATCTTAGCTATATG----CACTGCTGGTGCAGTGTGGTATGTTGCTTTACTGTGAACTTTTCCTTTTACAAGTACGAGTAAAGCTTAACATACTGATAAAAAGAATGCATCATGATCCAAAAGCCAGTATCGGAGGCATTACTTATCAAGTATTACGTCCTGTACACAGCTGTATGCGTTATGCATTTATACTGCTGGCAGAGCAGTGG----GTCTGTATCTATATCACCACAGGCATGCTGAATGGTA-----------GACATTGCAGGGTTGCAGCAGCTTCATGGTCCAGTCAGTGGCAACTTTTCAGCTCCGTGAAGGTCTTATGGGACTAAAATCATGTAGGTGACTAAAATGCTGTTATGTGGACAGTGCGTATG
s HiC_scaffold_1 219048586 597 - 233722169 TTCATATATAGTTACTTGTCATTTAATGGTGagcatatattttgaaaaacaccTTTTTAGGTGATTTAATTAT-GCAAACATCATAGAATAGACTGACGTAAACCTAGACATAATAAATAGCCTATCACCTACCTAAACTTTATGGGATAGCTTTTCACTCC---------TACAACCCTAAGTAAGAGAGCAACAT-------------------------AAGattaaattaa------gacaaaaataagtCATGCATTCAAGAGAGACAGTAAATACAAGATGTACGATGCTGCTGCTGGGGTAGCAAACCGTactattttattgtaa-----tttttttataagTAGGAAGAGTGCACCAAA-AATAATAAGTAGTATAGAAAATA---CATAAACCAATAACAGAATCATTTTCTATTAAGTATTATGTACTGTATATAATTATATGTGCTATACTTCTATACTATTGCAACTACAGTAGTCTTGTTTGTACCAGCAACACCACAAGCATG-TGAGTTATACATTGAACTAGGACATTACAATG--GCTACAACATCA----CTAGATGATAAgaatttttcagctccattataaTCTCATGGGATCACTATCATACA-CTGACCAAAATG-----ATGAGCatggtgtgcatg

a score=4016
s chr3            31239295 126 + 160039680 ATACTGATAAAAAGAATGCATCATGATCCAA-AAGCCAGTATCGG-AGGCATTACTTATCAAGTATTACGTCCTGTACACAGCTGTATGCGTTATGCATTTATACTGCTGGCAGAGCAGTGGGTCTGT
s HiC_scaffold_1 157979618 121 - 233722169 ataatgataaaaaa-------tatagtcTAATAATAAAGTAGTGGCAGCCATTTATTATTAAATGTTATGCACTGTACATAACTCTATGTGCTGTATTTTTATATCACTGGCAGCACAGTAGATTTGT

a score=8727
s chr3            31337406 254 + 160039680 TGAATGAGAACCAGCTTCAAGGTACTTTGAAGCCAAAGAAAGGTAGGCAGACATATCCAAGAGTGCATAAAATGTGATTTACTGGAGGA--TTTGCTGATAGAATTGTAGCCCCAGGCAGCAATAAGACTGAGTGGATCCTGGCAATGTGTGTCATAAGAAGGGACATATATATTGGCCTAGACAAAATTGATTCCATCCAAGTTTTAATATATCTGGTTTACTTTAAGCTAATATCAGAGTTGGGCACACATTCT
s HiC_scaffold_1 221421347 252 - 233722169 TGTATGGGAATCAGTCCCAAGGTGCTGTGAAACTGAGTAAAGAAATGTAGACAAATCTAGGTTTTCACAGGGTACAATTTATTGGGGGAATCTTACTTATTGAAGTGTGATTATGGGCATCATCAAGGCCAAGTGAATCCTTGCAATTTGACTCT---GAAGGAGCCAGTAAATTGGTTAAAACAAAAGTGATTTCATCCAAGCCAGAATTTGTTTGGTGTTTCTTAAGCTAATATAAAAATTCAG-GCACATTCT

a score=66349
s chr3            31773805 3685 + 160039680 gaaaacacaatcaaacaggtagaagtccttatagaaaaacaggaaaacacattgaaacaggtgatagaaa-----------tgaacaaaaccatactagacctaAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTG-AGGCAACGCTGGAGATAGAAACCCTAGGA----AAGAAATCTG---GAACCATAGATGCCAGCA-----TCAGCAACAGAATACAAGAGATGCAAGAGAGAATCT------------------CAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAAT--GAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCC-CGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGA--CAGATGTTATACAGACACTAAGAG---------------------------------------------------------------------------------------------AACATGAAT--TCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA---AAC--AAATACACACATTATCTCTCCACGAATCCAGC--CCTTCAAA--------GGATA-----------------------------------------------------------------------------------------------------------------------------------------ATAACAGAAAAAAACCAATA----------CAAGGAC----TGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAA---------------------------AACTAAAAGAAGA-------CAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTA-CCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTAT---------------CCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA--AGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAA---------ACAAG---AAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG---ATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTG-----ACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGA-TCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACAT-GATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGT----TTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaat-----aaactcaaaca-agtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag-ggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatct
s HiC_scaffold_1 111205820 3916 - 233722169 GAAGGTATAAATAAGCAGATAATGGGCCTAATAAAACAATAGGCAAGGCTACAGAAGGTACTAATAAGAAGCTGGCTCAACTAAATAGaatgatac--------aaaatatgaatgtccagcataaaaaagaattaaagtgcaggaaaagacacaaaacagaacttcaggagattaaaaattctgttaaaGTTATGGACAGCAGTAGGGGGTCA--AAGTGAAGACACAATGTGAGAATGAGAAGccaggattgtttttgctaaCCAGTTACTGAG--------AGAGAGCTTTATCacagcaa---gagaccatgagaaacgCATGCAACTGCTG--TTAGAC----------------Gacacaa--agaagactaatctCA-GATTAATTTGCATAGTGAAAAGTCAGAAGA----AAGCACAAATGCATAA-AAacttatttagagaaataat---ataaaactttccaaataGGGGAAAAGAATTTAGCACACACACAAGTGCGGcacatagaaccccaaatagccaaaaTCAGGAAAGAATCTCTTCTGTAATGTACCATAGTCAAAATCTCCGAactccaacacaagaacagattcttaaaagttgttagagaaaagcagtgaatcacttataaaggaaaacacattagaattgcaacagacttctcaatacaaaccgtAAAGGCCAGGAAAGCTCGGAGTCAAGTGTTTTA--GGCCCTAAAAGGAAAAaccttctgggctggggatttagctcagtggtgcagcgcctgctggcaaggtcctgagtttgattcctggtacaaaaaacaaaataaaaaacgaGAATCTTTCCACTCAGACTGATGTATTTTGcaacattttctttctgaattgatggagaaataaggtatttccataaTGAAGCgaacctaaagaaattcatga-----ccaccaaaccagcaccctttaaaattttcagggatattttgttattattcttattttgtttttttgagacggggtcttactgtgcagtttaggcttgccttggactcactttgtagctcaggctggtcttgaacttgcagtgatcctcctgcctcagcctcccaagtactgtgattacaggagtgcaccaccaagcccagcttcaATGATATTTTAGACAGAGACACTAAAGCTAACAAGGCCAAAAGGCCACTAGAATGAATACAGCAGGTAGAGTGAACagttaaataaaagagaaagacaatcagcaacaggaaaataatgc----------------aatgacaggaaaaAGTCAGTaactttcagtaataactc--aaTGTGAATGGTCACAATTTGCCAGTCAAAAAGCACttattggcagaatggatcaagaaacaaaatcaaaaggtATGGTGTACACAACAAATCCATTGCATACAAAAGGAAATTTACAAacctaaaaatcaaaagatggaaaacaatattctatgcaaaGGAACCCCA-AAACAAGGTG---------TCTTATTTTCAGATAAAGTGGACTTGCTGCCAAAACTGACTAGAAGAGGCAAAGAATGTCACTGCATATTAGTTAAGTGAACAATTCAACAGAAAGATATAACAATTGTAAACACGTATTGACCAAACAACCAcacacccaacttcataaaataaacactaccagaaataaaagatca-gataaacatcaatatGATTACAGTGAG-GACCTCAATATTGTACTATCATGAatacatcaactagacaaaaaga---tcAACAGAGGAATATTAGAATTGAACAAAACCTTTggataaatggacttaatagatatctacaga----tccatcaaagaacaacagaatacaccttcttctcagcagcatataGAACATTTGCCAAAGTAGACCACATATTAGCAAATAAAGCATGcttaagaaaaagcaaaaat--ctaaATTATACCGTGTATATTTAGTGCATGGTACATTTTAGattatagtgcaataaaattagaaatcagtggcaaaagaaaccacagaagttatgcaaacacatggaaataaagCAACaccctcttgaataatcaatagatcacagaagaaatcaaagaataaataagacagttcttagaattaaataatattaaccgtacaacatatcagaaattatgggacacaatgaaagctgtcgTAAGA---AACTTTATAGctatgaattcccacatcagaaaaacagggCATGGCCAAGTA--AACAACCTAACAATGTACTTGAAGGTCTTAGGAAAGAAAGA--TCAATCCAAATCTACAGATagtacaagaaaggaaattataaagataagaacagaaatcaataaaattggaGAGTAACGCATAAattaaaaaacca--caaagaatcaatgaatcaaagggtt------ttaaaagaataaaacaaaatagccaA----TTA------------------TACCAAAAATAAGTCCCAAACAACACAGTCAAAAATGAAGAagatgaaaccagaagagataaTGCCAAAATCCAGACAATTATTAGCTAACTACTTTGCAAAA--CTATATGTCAAAAAATTggagaat-taaaagaaatagatgaatTCCTacatatgtatgaattaccaaaactgaacccaGA---AGTTGtaaaaacc--ctgaataatccaataatagGCAATGAAATCTAAGCAGTAGTTCAAAATTCttca----agaaaagcccaggtcctgatggattcactgcccAATTCTATAAGAACTTCCTGGAAAAATCTAATGTGCATACTCCTAAAACACtttcataaaatcaaaatggaaagcACACTGCAAAAGTTATTCCA-GAAGCCTGTATTACTGTGATTCCAAAACCAAACAAGGATCCAACCGCAAAAGACAACTACTGGCCAATCTCATTAACAAACATAGATAACAAATTTCTCAGTAAGAGATTGtcaaacagaatgtagtaaatcATCAAAGGAGTCATATTTCATAACCAAGTAGACTTCATCTCAGGgatgaaaggatggttcaacatatataaatcaataagtgtaacacatcacacaaacagaagcaagGG-AAAAATCACAGAAATCATCTCAACAGGTACAG-AAAAGCTTTTGAGGAAATCTAAcatacattcatgataaaaataaaaccttgaatAAAATAGATATGAGGGCCTGaagtcaatctgataaaagccattcatGAAAAACCTGCtatcaacatcatattaaatagggGAAAACTCAAATCCTTCCCTCcagaatcaggaacaaaacaaggttgcccactatcaccactttttCTTAA-ACAATTCTCAAAA-ATTAACTGGGGagatcaggcaagagaaagaaat-agaaggttatgtataggaaaggaaaaagtcacactattataattttca-atgacATGGTTCTTTACTTAGAAGACTCCCAGAATATCACCAATAGATgactagaattaataagcaaactCAGGAATGTAGCATGATATAAAGTTACTGTAACACAAAAGTAATCAATGATATTTCTGTACATCAATAATGAAttcactgagaaataaattagaaaaaacagtgctgttcacagtag-catcaagaaaattaaatatttaggagcTAACCTAACCAGGGATGTGAAAGGCCTCTATAGTAAGTACTATAGTACTCTGAACAAGGAGATCaaacaaaatatcagaaaatggaaagacattctctATTTCTAGGCAGGCAGAACTGATATcatcaaaatgaccatatttccaaagctgatacatagatttaaaatactctcaatcaaaataacaacagcttTCCTCATAAAAGTAAGGAAAAcagtcttaaaattcatatga------aagaGACCCGGAATTCCAAAA--TCAAATCCTGGCTGAAAAAACA---GGAGGCAACACAATCCTGGATTTGAAGTTATattgcaaagctacagtgataaaaacagcatggtattggcacaaGAACAGGTA--TGGATCACTGGAAAATAACAGAGAATGCAGAAACACCTGAAGGCACATTCAGCTAACTgatct

a score=74712
s chr3            31773830 3596 + 160039680 tccttatagaaaaacaggaaaacacattgaaacaggtgatagaaatgaa--caaaaccatactaga------------cctaAAAAGGGAAGTAGACACAATAAAG---AAAACCCAAAGTGAGGCAACGC-TGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGCAAGAGAGAATCTCAGGTGCAGAAGA-----TTCCA--TAGAGAACATCGGCA-----------CAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATG---AAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTA--CAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAA--CAAATACACACATTATCTCTCCACGAA-----TCCAGCCCTTCAAAGGATA-ATAACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCT--------CAACAA--AACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA--ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGG-AAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAC--TCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACC---------TCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGT---GAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACC-AAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAA---AGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaat--aaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag--ggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactct-aactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagc-attctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaac--tcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaa
s HiC_scaffold_1 185148935 3537 - 233722169 TCTCTAaggtaaaaaaggaaatgatattaaaa---ataatggaCTTTAAAGCAAACGCAGTTTAGAAATATAGAGAAGCTCAGAAAAGCATGAAATCCCAACATAGGGAAAAAACTAGAATGCTATGAAGCATATAAACAGAAGTCCTAGGGGATTAA----AGACTTTCGTCAGAAATATATGCAACAGACTGAATGAAGGTGAGGATAGAatatcaaatcttgaagacaggattgcagctagtgaccagCAAAAGAAAGGTATCTTAAAAATTGCAAgagatcacacacacaaaaaaaatc-aacccaa--caCTTAcgaaat----gaagcaa--agaagagcAA-CATAAAATTGTTTGGATTTAGTGAGAATGCCAGAGACAGTGCA---AAAAGACATTTAAGAAACCGTCACAGAAATAATGATAAGAACCTCCAAAAtgtggataaagaattt------gacagcCAAATAATTTgggtagaactccaaataaccattactaaaataaatctacatgaaGGCACATAATtattaagattccagaaactcagcacaacaACAGAATAGTAAACATATCTACAGAAA--GGacacatcacctataaaagaagac--aacagaatcacagtagacttcttaCCATAAACCCTCAAATCAAAGAGAGTTTGGCATGAAGTATCTAAggtcccaaaagaaaacaatcttcaactCAGATTGttgtatcccacaaaactatctttcaaaa-aaatagagaaataagacacttgaattacaaagaactgaagaaatttatgaccactaaaccaaATTCATATAATGCTTTGAAGGATATATTATAAAGAGATA-----ATAAATACTGCAAACACat--gaacacaaagaaaaagaagctcCCTGGTAGGGCCAGCAATTAATCAGAGGA---------TAAAGagagggaaccaac---aacaggaaaataatgagaaagataaaccagtacatatcagttataaccatcaatgtgaatggtctcaactcaccaatcataagaaacaaactggcagaatggatcaagaagtgagatctaacaatatgctgcattcaagaaatatgttttaactcaaaaatttatagacta----aaagttaaagaatgaaaaacaattctccatgctacaggaacccagaaaagagcaggaatagttattctatttgtagaaagtgtgaactttaaaccaaaactgatcaaaagagataaaaatgt-cattacatacttgttaaagGTAG---CCcccaagaaaaaagataacaatcataagtgGACATGCACCAAACACACTGATGCAcataattacataaaaca--------aatattaacacacatgtaaaaccaataagcactaacacaattgtattgGGGGACCTCAATAATCCATTTTCAGAAATAGATCAatcagagaaaaa-----tcaataaaggaaTATCAGAATTATAGCATGCCTGTGATCAAATGGATATGACAGAAGTCTACAAAGTATTCCACCTTAAAACATCATAATATGCATTATTCTCAGCTTTACAttgaatgttctccaaaatagaccacatatttgcctacaaaatatgtttaaataaatgtagagGAATTGAAATTCTTCTATGCATACTGTCAGACCATAGCACAGTGAAATTGGAACTCAGCAACAAAAGAAGCCATAAAAACTGCATAAGCACAGGGAAATTAAGCatc---cttttgaacaaccagtgggtcatagagaaaatcaa-aatgacattaaacagtatatacaattaaacaataataccAATAAAACATACTAGAACATATGGGATGTGATGAATTTAGTCCTATgatggaaatttatagtgatgaactCTTACATCAGGCCAAAAGAATGAACtca----aacaacttaatgttgagcctcaaacttctagaagaacacaaa--aatcaaacccaaaccttatataagagaggaaa---------ttaaaggtaaagaaattaatgcaattgagactcagaaaacaatacaaagaatcagtgcattaaaaagttggttctttgaagtaataaataaaactgataaaccatTAGGAAACCtcataaaaaagaggaaagaagaaatacaaattcaaagatttaggaatgtaaagagaaaaatcacaagggatcctacagaaatccagaagataattAATACCTACTATGAGAACTTATAAT-----AAGAtgaaaatcacagaagaaatgaacaaattcctagaCACAATTGAACtgccaaaaactaaataaatgttataaaaac--tctaaataacctgatatcaatgaaattaaaaatataattaaaaattactaaC-----------AAAGAGTCCAGGCCCTAACAGAGCCACTGTTGAATTTTAcaacaaatttaaagaagaactaaTGACACTAATGTtgaaactctttaaggaaatgGAAAGGAAGCCTATACTTTCAAAATCACTTCTGAAAGCAAGTAGGACCCTAACTCTAACACCGGAGAagaaccaaaatgaaaaagaatactaCAGACCAAACtctgtaatgaacatagatgcaaaaatcctcaagaatatattagcaaacagaacgcagcaaatcatcaagaggattatacactatgaccctGTAGAATTCATACCAGagattcagggatggttcaacattctTGAACAAATCAATA--------CATGTTAACATAATCAGAGACAGAAATCGCATGAtaatttccatagatgcagaaaaagcatttgat-agtTCCAAAAttgattcatgataaaaaccctacagaaaactggataGTTcgtttttacctcaatctgataaaaaccatctgtgGCAAACCAGCAGctaacatcttactaaatggtcAGACACTGAAAACttgcactctaaaatcaagaataagacaaggatgtccactgccaCCACTCTTAtccaatataattctggaaacattagccagagcaattagaccagagaaagtgataaa---aatattaa---gaagagaagaagttaaataatcattatttgcaaatgacatggtaTACTACAtaaa-gatgccaaaaactccaccaaaagacctGTAgacttaataatcaaattcagcagtgtagctggatacaaagttgaaactaaaaaaa---aatgac--------------------aacaaactcacacagaaagcagcaaaaaaccacaccctttataatagcatccaaaaatctgaaatgcttaTGAACCAATctaaacaaaggaagtaaaatatttatacactgaaaattacagtactctgtaaAAGGATATTAAAGacgatatcagaaaatggaaaaatatcccttgctcgtggatagaaagagccagtatagtgaaaatggccatactctcaaaaactggtacacagatttaatgcaatagtgatcaaaataccattagcatactttgAAGATCCagataaaataatcctaaaactcctttggagacagaagagatctaaaataacaaaagcaatcaatTCTGGGCAACGAAAGCAAATtgaggcatctcaatccctgatctgaagttatattacaaagctactgtgataaaatcagcgtggcactggcagaaaaaaaaaaaa

a score=20421
s chr3            31773998 1623 + 160039680 ACAGAATACAAGAGATGCAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACA-----------TCGGCACAACAATCAAAGAAAATGGAA--AATGCAAAAAGATCCTAACTCAAAATATCCAGGAAAT-CCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC-----------------CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACT-------AAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTC-TCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCT---------CCACGAATCCAGCCCTTCAAAGGATAATA---ACAGAAA----AAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGAT---------AATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAAC-TTTAACAACAAAAATAACAGGAAG-------CAACAATTA---CTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCG--TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAA--ATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCA
s HiC_scaffold_1 150311065 1603 - 233722169 aCAAATTACAGCAAAGACCAAGGGGAAGACAGAGTGCCTGAAATT-----GAGAACAAAATAGTGGATTAGGATGAATACTCAAAGAAACTCCAAGGAAtataagagaatgagagac--aattATCCAACAGGTACTATGTGACAATAAGAAGGCCAGTCTAAGGCAAAATggattaagagaaaaattaaaatat--aacaca---GATTTACCAATATGGTTTAAGAAATCatagaagaaaaatttccaaatataagAAAGGAGTT--TAAAAAACATTATTGATGCTTACAGTACAGCAAACAAACCtaacaacacaacaacaaaaaacaaagaagaagctTACCAAAGTACATCCTTACTAAATTATGAGatgtccagaaaaaaaaatgacaatagaaTTCTTttacaaacaaaagaagaaa---acatcacaCATAAAGGTAAACCAGTTAGAGTCACAGCCTACCTCCTAACATAAACTGTAAAGGCCAGAAGAGATTGTAGTGAAATACCTCACATCTTGAAAGCAAATAATTTTC------------------TAGCAAAagttgtccttcaaaatagatggagaaataaagtttCTCCATGG-AAAAACATCAACTCAAAGGATATATGAATGTTAGCCATCACTAAAAATCATTTAAGAATATTCTccacagaaataacaaaactgactCAG---CTAAAAACAC-------AGAGGACATGAAAATTCCAAGTAAGATCAATGAATAAAGAGCAACAAAAaatgtcaggaaaagaaaa-gcaaacattcaCCAGCAGATAAAGAAGGCAGTTATATTCAAGAATCAACACATCTCAGTAGTATCTTTTAATATTAACAGCCTCAATTCTCCAATTAGAAGACAAAGATTGAGAGAATGGATTGACAAACAAAACCCAACTGTC------------AAAACTCATCTAATctaaaaagatattcacagacaaaaaattaaagggtagaaaacaacatttcatgcaCTAGGACCCCCAACACAAGCATGGGTAGTATTTCTAATACCAGA-GATGCTAAATTCAAACTAAAACTGattagaagacagaaagaaaagaactacTAACTAGTCAAGTGAACAatccaagaaaaagagataacattaataaaaatatatgcaccaattcTTGGAGCACCTATGggcataaaacaaaaactgctgaaGTTAAAAGATCAAGTAAACACTAATACAATCATAGAGAT---TTTTAACACCCCACTTT--Tccagagacagatcaactagaaaaataa---aaaaaaaaattcag---agctaAACAACACTCTTAAACAAAGAGACTTAGTGCATATATACAGAGTATTGTATCCT-CTGCAACAGAGCATACATTTTCTTCAATAGTTCATGTTACTTTTTCTAAAACAGAACATGTACTAGTCCACAAAGCTTgtgtaagaaaatacaaaagaattaaaattacccAAAGCAT--------------GTGCAATGAAAATAGAAGTCAAAGACAAGAGAATGTTTGTGAAAAGCAAAA--TCTCCTGGAAAATTAACAGCCTATCCCtaaataa--------acacagaagaaacc---aAAGAAATTGACAAATTTCTGGAAGTTATTGGTTGCGACTGTACAACTTATTGAAATTATTGCAATACTATAAAAACA

a score=15661
s chr3            31774057 1059 + 160039680 GGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAA--------TATCCAGGAAATCCAGGACA-CAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAAT--GAAGATTTTCAACTCAAAGG-ACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAA--GCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG--------GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAA-------AACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAA--AACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAA-----TAACAGGAAGCAACAAT------------------TACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAG-GGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGG-----ACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCAT
s HiC_scaffold_1 185221884 1072 - 233722169 GACAAAACAGTGAATTAGAATTAAGAGTTCAAAGAAGCTATAAGAAAAAGAATAGGACTACATAGCAGCTCTTGGATGGCAACAAGAGGAACAATCTGAGGCTGACTGAGGTTAGAGAAAAACTGGGAGAT----AGCACGGAGGGATTCACTAACATCCTTttagaaatcatgaaagaaaatttcccaataacaagaaaacaatt--taaagtacAAATAAGCATTGCTCCTAGAACACCAAACAATTACGATGGGAAAAGAAACTCACCAACACACATTCTTATTA-AGTACCAGATATCC--agcaaaaacacaattttaaaagcagtcagaaGGCAGTGGGAAAAGATC---------------TCAAGTCTAGGTAAATCA-GctacacttctcaacacaaacactgaAAGTCAGAAAagcttggagggaagtatttcaagtcctaagaACAactaactttcaacccagattaattTACCTAGC-AAATATTCCTTCAacatagatggagaaataaagtatttctatGTGAAAGACCAACTCAGAAAATATATGAGTGCTAAGCCAGCTcc----agaaaaattactttaaaatattcttgacAGATACAGTAAATCAAATCAGATGCAGCTGAAAACAGAGGGAAACTGGTGAGGCAATAAACTAAA------CAGCAACAAAAGGA--------actgggaaaataaaaagcacataCCAGGAGACGAAGACGGCGACGGTAGTAAATGACACATCTCAGTAATAGCTC--AGTGTTAATGTCCTCGACTCGCTAATTAAAAGATATAGACTGACACACTGACTCAAAAAACAGAATCCAATAATCTGTTCCACTCAAGAAA-TCATCTAATCCAAAAAAGACATTCTTAGACTAAaagttaaagaatggaaaacaacattttatGAATCAGGACCCCTTAAATAAGCAGAGGTATTAATTCCAGTATCAAACATGGAAAACTTCAAATTAAAAttgattagaaatgaaaaagaaggtgtcTCCACTACATACTAGCAAAAGGAACAACCCAACAAGAAGAGAGACTACAGataaacatatatgtaccaaGTACTGGGGCACCTATCTTCAT

a score=80974
s chr3            31774062 4455 + 160039680 [encoded data, 5059 characters]
s HiC_scaffold_1 119948109 4822 - 233722169 [encoded data, 5059 characters]

a score=20286
s chr3            31774065 1798 + 160039680 AATCAAAGAAAAT-GGAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCC-CATGAACATACAAGAAGCCTA-CAGAACTCCAA---ATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAG----TAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACA----AATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT-----AATA------ACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAG------AAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACA-AAAATAACAGGAAGCAACAATT----ACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAAC---ATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACA----AACACTACCTCAGAGTGAAAGGCTGG--AAAACAATTTTCCAAGCA-AATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGG-------ATAAAATCGACTTCCAACCCAAAGTT-ATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATT-------------CATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGA---CACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGA
s HiC_scaffold_1 152824766 1678 - 233722169 aagtaaagaaatTCAGCAAACTCAAAGATGATATAACACAAAAGA--CAGTACAACTA---CAAAATAACGTAACCAA---TGTGGA----AGAATTgaataaaaa------------attggaagagcTAACCAAAATGGTT--CAAAACT--TGAACAATA------AACTATCGAGAAAATAAGGCTTCATGAA-----AAGGTGCCAAGCAGAAATCCAAGAGATAAAGTG--CCA---AATAATTACTTCACAATACATTTTActcaaaatcccagaagtccaaa---------GAGTCTTAAAAGATAttagataaaaa---caaaaccatcatttCTACAGCTACACTAAATAGGATTACAGcagatttttcaataaaaattttgtaGCCCAAGAAAAAGTGAAGTGTTTtaattc-----ctaaaagaaaacagcttccaatccagactaatatatcctgcaaaactatc---tttagttgatggaaaaataaggacATTCAAGGACAAAGAACAGCTTAAGAGATACATGA-----ACACCAAAACAGCActcaaaaaaattcatgaatatcCTACACAGAgataa-------caaagacaaaaatctgaacataatgaatacaaacaaTCAAAGTGAGT-----AGTAAATCAAAAAGGGGAAAAC----AGAGGag----------tcaacaaaagaaaataaaaggcaacTGTAAGTCAAAACTATCCAGTAACAACTCTCAATATAAATGGCTTCAACTCCCCAACTGAAAAACACAGAGTAGCAGACTGG----ATCAAAAGTACAAAATTCAAGTCTGCTAACT-TAAGAgactcatctaatccaaaaagaaattggtagactgaaaaaaaatcaaaggatgggaaaaaaaATACTCTGTGCATCAAGATCCTCAAAAGCAAGCAAGGACAACAATTTTATtctaaggaaatttaaaaaaaaaactttcaagttaaaactgatcagaagaggtaaaGAAGATCACTAAAGATTACTTAAGAGAATAATTCAATAGGAAGAAgtaacaattgtaaatatttatACACCAAATATAGGTGCACTAACCTTATACAACAAACTGCACTGAACACA------TAAGATCCAACAAATA--------CCAATATAATCATAGTAGATGATTTCAATAC-CAACTTTCACTAATAAAC------------TAAACATTTAACAAAGAAATCAGAGCTGAAcca----cacctctg-aacaaatgaatttaaacagGTATC-ACAAAGCA-TCCACACtataac---agaatacacatttttttcaacaTCACAcaaaacattctctaaaatagaccacatactagctgaTAAACcctgcttaaataaatgcaaaagatgcAAAATCATCCCACATAC------------------------ACAAATtccaaaaggaaacaca--------aaaattTTCAACCAGCTGGACACTAAATAACTCAATTTTGAATACTCAATGGGTCATGG------------AAGAAATTAAACCACTgcaaaaatcaaatgataacgCCAGCACAAAATACCAAAGCTTATGTGACA-----AAAGCAATGCTAAGACAGAATTTTACTGCCACAAATGCTTGCATTGGAAAAACAGAGTAAGCTCAAATGACCTACTGG----TGCCCCTGAAGCTACTACAACTACAGAAACAGTCCAGACCCAAACCAAGTACAAGGAAGAAATTCATAAAGATCAGGGGAAAAATTAACAACATTGAGACTACAAAA--TAACACAAGAATCAATGTATCAAAGaactatttctttgaaagaataaagtagGCAAA

a score=82523
s chr3            31774071 4442 + 160039680 [encoded data, 4692 characters]
s HiC_scaffold_1 122750200 4490 - 233722169 [encoded data, 4692 characters]

a score=18259
s chr3            31774149 971 + 160039680 GATAATAGGAG-----TGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTTAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTT-----CACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTC-----AATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAA---AAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAA----------AACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAG--CAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTA---CACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA--ATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAAT-GCAAGGGCAGCCACATTCATTAAA
s HiC_scaffold_1 125873502 960 - 233722169 GATAATAACAGAATTatagaaaaggaggaaaatttaaaa---gaaatttcaaaagatgTGTTCACTGAAATTATAGTATAAAACattccaaatataggaaaagaattcAATATCCAAGTATAGAAGATCTGTAGAACCCAAAATAGCCACGACCAGAAAAGGAGCTCTCCATGACACATcttaatcaaaattccagat--agtcaacaaaaagagaatactaaaagccattagagaaaaacAGCAAGTAATCTACAAAGGCTATCTCATCAGAATAATGGTGAATTTCTAAGAACAGCAGAAAGATTAAAGGACAGGAGAGCTTGTTGTGAAgtttt-caaaccctaaaagaaaacaactatcaGCCTAAGCTTTCATTTCTTGAAAATCACACTTCAAAATTAATACAGAAGGAATGAAT------TTCCATGATGAAGAAAACCTAAAGAAATCCATGGCCACTAAACCAGCATTGCAAAAAATACTTAAGGGAATTCCAGACAGAGACAAGGA----GGTCACAAGCATCAAAAGTCAAAAGGAAAGTTTACAAATAATTGAGAAAgtagtttaaaaaggaaaac----ataaaggaaTA--AACACTGGAAAATGATACAATGGCAAATTCAATAAACATCTCACAGTGAGAACTCTCAATGTCAGTGGCCTTAACTCTCCAATTAAAAGGCACAAACTGGCAGATTAAATAGGGCAGAAAAATGAGACCATA---TATTGCCTAAATGAAACACACCTCATCCAAAGAGAAATATATACACTGAAAGTGAAAGAATGGGAAATGATTCTCAATTTAACCAGAGACCAAAGAAAGA----GGAGTAGCTATCTTATTTTCAGACACAACAGACTGCAAG--CAAAATTATCAGAAGAAACAGAGATGACCACTACATAATGATAAAGGGaacaa---------------taataattacaaatatctatgcaccaaatctCAAATGCA-ccaactttataaaa

a score=88341
s chr3           31774180 4279 + 160039680 [encoded data, 4449 characters]
s HiC_scaffold_1 71341300 4226 - 233722169 [encoded data, 4449 characters]

a score=61708
s chr3           31774197 4046 + 160039680 [encoded data, 4518 characters]
s HiC_scaffold_1 34546238 4305 - 233722169 [encoded data, 4518 characters]

a score=26176
s chr3           31774205 1753 + 160039680 TTAACAAAATTA-TTGAAGAAAACTTCCCAAATCTAAAGAAAGA----GATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAA-ACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAG------AAAAAAACCAATACAAGGACTGGAA------CCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAA-----------AACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAA--GGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTA--TGAA-------ACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAA---AGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACG--GAAAGCCAACATTCACGTG---GAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA---CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC-------CCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAA---------TCCTAATTTACAAAATC--AGAAAT----GAAAAGGGAGACATAACAACAGATCCTGAAG
s HiC_scaffold_1 18451913 1744 - 233722169 tttgcAGAATTAATTGCAAGAACATTCCCAAGTTTAGCAACAGAATCTGATATCCAG----ATAAGTGGGGCATATAGAAATTCAAATAGCAATAACctaaataaatctatacctagcCATATAATAAACCATAGactagaaattcagcacataaacagaatatcaaaagctgttagagaaaaag--taaaagatctattaaaaCAT-----TTAGAATTGCAGCA-ACTTCTCAATAGAAAGCCTCAAGTTAAGAAaagattggagtgaagtattccaagacttaaaagaaaacaacttccaacccagattg--atgaccttcaaaattc-------------actgaaaaataagatacttccataaccaAGTACCGCTGAAGAAATCCATGTTTAACTAATCCAATTAAACCAAGgttagaaagagtactgaaagatattctagacagagacgAAAGTGACTGCAATTCCCTgaacaacaagagaaagaaaccatcaggcaAGGAAAGCGATTAAACAAGAGGAAATATCAGTAAACAAACAATagcaa----aataacaagaaaaagataagacaatatatataatttatagtcaT------ATACAAATGGCCTcagttcatcaatcaaaagaaactgaTTGGCAAAATGGgtaaagaaacaagatccaacaatatactgtagTCAAGAAACAAAtctaactgaaaaaaagaaattctgagg-aaaggaaaagtatttaaaacaattttccatgcaacaggaaaccagaaaaaagcaggaataggtattctgtttgcagacgatttgaaaatcaatccaaaaatgatcaaaagagatttttaaaagttccataTATACTAATTAGGGG-AAAATTCAACatgaagagatagcaatcatctatatatatgtatcaaatatgGGTGTATCCAACTATAGAAGACAAATATTAAttaacataaaaaatcaaatatgtaataacacaattgtagcaagagaccttaataccccattgtcacaaag----agatc-----------aactagacaaaaaaacaaagaaataaagagaactgAATTGAATCTATTGACAAATGGACAtactagatgtttacag--tgtttcAAC---AAACAAATTCAGAATACACCTCATTCTTGGTGCAT-ATGGGACATT-TCTAACATAAACCATATACAAGCccatataata--tttacataacttcaaaagaatttaaattatcccatcCACATTATCCAACCAttgtgcactgaaattggaaattaatgacaaaaaagaaagtgctaaaattacacatacacatacatgtaaataaataacatgctcttgaacaatcaatggttcacaaatgcaattaa-aaagaaattaaacaatatctaaactCAAACAAAAATGCAGCCACAATTTACCATAACCTGTGGAACACAATGGAAGCAGTCTTAAGCAGGAAATAtacagcagtgaattctcacattaggaaaatgtAATGAGCACCAATAAATAAC--AATGTTTCACTTCAAGGTTCTAGAAAATAAAGAG--CAATCGACATCATAGG-TTATacga-aggaaaaaattaaaaagctcagagcagaaattaatgcaattgagtctaagaaaacaatac-gagaactaatgaatcaaagagttgatgcTTTGGAAGAATAAACAACATTGATAAGCTAGCCAACCTtaacaaga------aaagagaacaaagaaagaaactgggacttcctga-----aaaagcaaagaaatatgggaagatgaagaaacaacaaaaagttcccagg

a score=63779
s chr3            31774206 2856 + 160039680 TAACAAAA-TTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGA--CACATAATAATCAGAACATTAAATGCACTAAATA-AAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGAT----AATAACA----GAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCC-----TCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCC---TCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAG-ACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAA-CAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTT-------CAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTG--AATGCCTCCA-AGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCT-CTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAGAGGGCACAGGGACAAAATCCT--AATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC-CTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG-ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTT------------TTGGAAAGATAGGAATTCAA-----------GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatata-----------------aaataccttggcgtgactctaac
s HiC_scaffold_1 201749343 2699 - 233722169 TAACAAAAGTCAAGggaaaaaacttcccaagcagagaaagagaatttgacatacagataagtgaggtatatggAACTCCAATTAGCTATGATCC--AAATAAATCTATCCCAAGTCATATAGTAATTAGGA--TTCCATAAATTCAACacaatacagaatattaaaagatacaagagaaaagaaacaaatcacatatatatgaaagcccatcagaattacagcaaacttcctaacacaaacccttaagtcaaggagagtttggaatgaagtattacaatcccaaaaagaaaacaaccttcaacccagactgatgtacct-gaaaaactatctttcataaTTGATGTagaaaaaagatactttcattacaaagaacatctgaagaaatc-cCTGAACACCAAACCAGTACTCCAAAATGTTccaaagaacattctagaaagaggtaA--CAAAGACTATAACT-----CCATGAATCCCAACAGGATGAATCTACATGGCAACAAAAGTAATTAAAGAAGG-----ggaacaaa----------caacaggaaaataacatgacaaggatgagtcagtacatatcagttataaccatcaatataaatggtgtcaattcaccaatcaaaaga--------aacagaatggattaagaaataagGTCTAACTagatgctgcatacaagaaatacatttaattcaaaaagaaattcatagacggAAAATCAAAGAGTGAAAAACAATAGTCCAAGTGatggaaacccagaaaaaagcaggggta----ttTTATGGGCAGACAAAGTCAATTTCAAACCAAGAAGTATCAACAGAGACATAGAAGGTTACTTCATACTTGTTAAGGGAGCAATCCCAATCCAAAAAGAGATAACAagcataaatatgtatgtaccaaATATCAGcacacacagttatataaaacaaatattaatgcacatgaaaaatcaagtaagcactaATGTAATTGTGATGGGGGGACCTCAACACAC-----TCAGAAATAGACtagccaaaaaaatcaaaaacgaaa-----------------tatcagaa---ataaatcaaat-----------------------------------------cagaatacacgttcttctcagctgcacatgggatgttctacAAAATAGATCACACACTAGctcacaaaacatgcttaagtaaatatgaAGTAatggaaattatcccatgcatactatcagacca---tagcacaa---TGATTATAGGAAcacaatggcaaaagaaaccacaaaaacttcgtaaatacatggaaa-taaataACCCTCCTGTTAACAA---ATTGGCCACAGATGAAACTGAACATCAAGtcaaacaatatctacaattaaatgagaatgccaatacaacatacaaGAATTTAAGGGACACCATGAAAGCAGTCACATGAGGGATATTTATAGAGGTGTCAAGACTCCCATATCAGAAAC-------------TGCTA--AGGTTGA----ACCTCCAGCTTCTGccagaagaagagcaagtcaagtc---caaagctggtatgagggaagaaattataaagagcag-----aaattaatgcagtcaAGACTAAGAAACTAATGCAAAGAATAAATGAACCAAAGAGTTGattgtttgaaaaattaaataaacttgacaaacccttagtcaaccttatcaaaaaagtaaaaaaaaaaaaacctcaaatctATGCAGTTAGGAATGGCatgggtgaaatcacaacagatcctgcagaagttcaacagatcatcaatatctactttgaaactctgtattcttataaaatggaaaacacaggaaaaaatggacagattcctagattcatatgaattaccaaatctgtatcaaga---ag------atataaataa-cccaaatcagtcaatgaaattgaagacataattaaaaa-----ctaCCAAGAAAAGCCCTGGACCTCACACATTCACAGCTTAATTCTCTAAGAAATTTGAC-ACTATCTAATGCCAATAC--CTTTaactctttaaagaaaacaaaaggaaagcaatgtttccaaattcattcctcgAAGCAAGTATTACACTGAaatcaaaaccagagaatgatCTGACTAAAAAAAAGAGCTACAAGTCAATTCCCCTAATGAGTGTAGACAGAAAAATTCTCAGAAAGTTAcagacaaacagaatgtag------------------------------caagtAAGATTCACCCCAGGggtgcaaggatggttcaacatatgcaaatcaataaatgtaatccaccatatcaatagaggcaaaggacaaaaaccacatgatcatctcgaTAGATCCAGAAAAAGCGTTTGACAAATTCCAACACCCACTCCTGATAAAAATCCTTCAGGAATAATTGGATACAATAGAACCCAACTgcaatagatgatctttatctcaatctgataaaagc-----------caccaaTAGCCAACATCCTACTAActgcacaaaaactgaaagctttcactctaaaataaa-----aaacaaggatgtccactgtctccactcttattcagttTAGATCTgtaaactttagccagagcaataagacaagagaaaaaaat-aacatgaaaaagattgGAA---GTGAAGTTAAATTA------TTTGCAGgtaacatgatattctacataaaagaccaCAAAAACTTCACCAGAagtcttctagatttaataaccaaattcagcaggaTAATTGGACAcaaaata------------------gcattcctatatacaaatagcaaactgaacgagagagaaattagggaa-----acctttcataatagtatcaaaaaaaaaaaaagaaaaagaaaaaagaaatacctaggaatcaatctaac

a score=21099
s chr3           31774210 1516 + 160039680 AAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACC-AAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAAAACCAA--------TACAAGGACTGGA-----ACCACGCCCTAGAA-----AAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAAC--AAAAATAACAGGAAG--------CAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACT-CCCCAATAAAAAGACATAGGCTAACAGACTG------GCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCAT----CTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAA-----GAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGAC-AAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTT--CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATG-GGACACAATGAAAGCATTTTTAAGAGGG---AAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA
s HiC_scaffold_1 15467768 1426 - 233722169 aaaatcatagcagaaacaattttaaatctAGGGAAACAATTCAGTATTCATGTAAATGAGGCATAGA-AACCTCAAAGAGCTACCaccagaaaaaaa--tctacatattacatcataatgaaaatttcaaaaattcagcacaaagacaaaatactaaaaactgttagagggAAACTTCAAATAAGCTATAAAGGCAAACCTATCAGAATAATAACCAATTTCTCATCACAAACTTTAAAGACTAGGTGAGCTTGGAGCAATATTTCTC--GTACTAAAACAAAAGAAGTCCT--TCTAGATTTCTGTATCCTGCAAAATTCTCTTctaaaattgatagaaaaaatgaagatttttcatGACAAAG--------------TAAACCTAAGGAAATTCA------CCAACCAACATAgcaaaaaaatttcaaggcatccCTAGAGCGACAGGGAGTCCATCAGTCCCAAGGATCCCCAAAGAAGGAACATATTT---------AACTGGGAGGGTatttaaataagatgaaaaaatGAAACTCAACACTGGAAAAGTAATACAATGACAAATTTCAGCAAATACCTTACAGTAACATCTGACAGTGTGAAT-GTCTTGGCTACCCCAATCAAAGGACACAGAGGGGAGGACTGAGTCATGCCACCC---CAAATTCCAGACCTGTGTTGCCCACAATAAATACAGGTTATTCACATAAAACCACATAGGCTAC----AAGTGAAGACATGGGAGATGATATTCCATTCA------CTGGAAGTCCAAAACAAATATGCCTAGCTATATTATTTTCAGA-AAGACTAACTTCAAGCTAAAATtaattagaagagacaaagaaaagccACTTAATATTGATAAAAGGAACAACTTAACAGGAAAGagtaacagttataaatatata----------------------------------------ttgataGGTATCAAA------------------ACAATCATGGTAAGGAACTTCATTACACCAC-CTCATAAATAAACAGGTCAGTCACacaataaattaaca-------aataaa--tatcagTCCCTGTCATGCAAATAGTCTTAACAGATATCTATAGAGTGTTTCTTC----AACAATAGAATGCATATTTTTATCAGTAGCCTATTGAACTTTACTCAGAAAGGACCATATCTTAGGACCTAAAGCATACTTTAGCAAAGACTA----ATTGAAATAATCTCTAGCATACTAGTACATCACAgtagaatgaaattagaaattaacagcaagaaaaaacacagaaactacACA-AAAAATGGAGATTCCATAATACACTTGAATAAACAAga----agtcacagaagaaataaaataagaaattaaaaagttcctaaaatcaaat---aataggaacacaaaatactaaaacttATGAGGAAATAATGGAAGTAGTTTTAAGTAGGTCTAAGATGGAAGTCTTTTCtgactttaaaac-------aataaaacaattactaataatCTAATTATGCATCCCAAGGCCttggaaaaacaagaa

a score=51735
s chr3            31774214 2794 + 160039680 TTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAA-----------------------AAGAAATTCCTCCC-----GACACATAATAATCAGAACATTAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAA--------GGATAATAACAGAAAAAAACCAATACAAGGACTGGAACCAC----GCCCTAGAAAAAACAAGAAGATAATCCCTCAA-CAAAACTAAAAGAAGACAGCCACAAG---AACAGAATGCCAACTTTAACAACAAAA----ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCT-------------------------------------------------------------------------------------------------------ACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCA------AGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCATCAA-TGGACAGATCG--TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACG-GGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGC-----ACAGGGACAAAATCCTA-ATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGT-----GCAGAGTTCTATCAGACCTTCAAAGAAGATCTA----ATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaa-aatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 105534203 2886 - 233722169 TTACAgaaggaaacttcccaagcatggaaaaggaATTTGAGAGGCAGACAAGTGAGACATAtc-aactccaattagccatgattaaaataaacaaacaaaaagaaaaaaaaaaaaaacacctcacacTGAGGCATATAATA----GGATTCCAAAAATTCAGCATaggaaaagaacattaaaaactattagagaaaagaagcaaatcacctagaaaggaaaccccatccaaaccatagcagacttctccacaTAAACCCTCAAGCCAAGAAAagcttggagagaagtatttcaagccctgaaagaacaT--ATCCCCGGACAGGTTGATGTAATCTGcgaaactttccttcaaaattggtggagaaacaagatacttttgtgacaaagaacacctggttgaaattcatgaccaccaagccaacactCCAAAAACATTCTGAAGACTAATATAGAAAGA---GAACGAAGACTCCAATTTCATGAGCCCCAGTAGA--------GTTAATCCACcaagcaaggc---aagcaattaaacagaggggaaacaAAAGGGAACTGATGACAGGGAAATTATATGACAGAAATAAGTTAACACACATCATTCATAATCACCAATGCcaatggactcaattcaccaatcaaaagaaacagattggcagaatagctcaagaaacaagatccagggttggagatgcagctcagtggcacagcgcctacctAGCAAgatcaaggtcatgagttccttgcccagtaccaaaaacaaaacaaaagagaaacaagatccaacaatatgggGCATACAAGAAATATGTTTAACTTGGAAAGATATACATTAAC----GGTCAAAGTgtggaaaacaatgctccatgggACAGcaa----cctg--gaaaaaagcagggccagctattctatttgcagtcCAAGTGGA-TTCAAGCCAAAACTGGTCAAGCCA--CAAAAAAGGTCACCGTGTCCTTGGAAAGgcaacaatccaagaggaagagataagagtCATAAATATGTATTCCCCCAGGACCAGAACACCca-atacataaagcaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTTCAATGGGGGAATCTCAGTACCCTACTGACACAAAATGGGCAGATCAACTAGACGACAAATCAAAAAAAGAACTGAGTCAAACTT----------TTGAACACATGGACTTAGTAGTTGGCTACAGAGTGTTCGGCCccaccacatcagaatacacattcttctccaaCCTTCAAGTCATGTTTTCCAAAATAACCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaaggaactgaaatcatcccatgcatattaGCAGACTCCAATGCCATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAAAGTCC-TAcgaatatggaaattaaataacatccttctaaacaaccagtggatcacagataaaattaaagaacaaattagaaaatttctACAACTAAACAATAATTGCCACACAAAATACC-------------------AGAAGCAGTCCGATGAGGGAAATTTAgagcagtgaattcc-catataAGAAATGCAGAGTGAACTCCAATAAACCCCTTAATGTGGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagcttgtACTAGAGGGGAAAGTATAAAGagcacagcagaaattaatgcaatggagactaaga-aaccATACAGAGAATGAATGAGTTAAAGAGGTGGTTCTT--GGAAGATGAAGTAAAACTGACAACCGCTTAGCAAAcattataaaaagttttaaaaaggaaacaaagtcttagatccatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattttaacaagatggaaaacacagaagtaatGGACAGATTCTATATCATATG--AATTGCCACAGaggaatcaagaagatgtaacaatTCTAAATGACCCAATGTCAGTCAGTGATGTTGAAGATATGATTGAAAATCCACCAgtaaagaaaagtccaggtcctgaccAATTAAATTCCCTGCTAAAGTCTAGGAAGC--TCAGAGAAGACCTACCTAATGCTGCCACTCCTCAAACTCTGGTGAAGTTGAAAGGTAATCAGTACTC--CCTAAGTCATCcatggaagcaagcattac-ctgaTACCAAAGCTGGAGAAGGAGCCAATCAAAAACAGAGAACTGGAAGCCAGTCTACCTAATGAGCATAGACAGAAAAATCTTCAACcagatactatcaaacagaatgcagcaaatcatcacaaAGACCACACACCATGACCAGgtaggattcatcctagggatgcagggaGGGCTCAagacatgcaaatcaataaaggtCACTCACCACATTAATAGAACCAAGGATAAAAACCACTCGATCATCTCAATAAGCACAGAAAAATCATCAGACAAATGCCAATACGCATTCAAGAGAAAAACTTTACAGAATATCCAACTAGATTGTCTTTAACCCAACCTGa-aaaagccatatatgacaaaccaagaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACTGGGAGGTCCACTATCACTTCTTCAactcaatatagttttggaaacattagccaatgCAAttagatggaaaa---aaataaaaggaaaa-------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGacatctagatttaataatcaatgTTAGTAGCATAGCTGGGTacgaagtcaacactcaaatatcaatagcatgcCTATACAAAAGtaacaaactcagtgagagagaaattaaggaaac

a score=66600
s chr3            31774258 3595 + 160039680 AACATACAA------GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATTAAATGCACTAAA---TAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATA-----AAGGCAAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATACAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAACTATTCCACGACAAA-AACAAATACACACATTATCTCTCCACGAATCCAGCCCT-----------TCAAAGG------ATAATAACAGAAAAAAACCAATACAAGGACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGA------ACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGA-CACAACATTCTGCTGCTTACAGGAAACCC---ATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCA----AATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAG-TTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTG-ACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTT--TAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA--AGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACC--------------------------------------------------AGACGGGT-----------------------TTAG---------TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAAC--AAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggataca-aattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaag-atctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgcca-----aaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaagga---gcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct---caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatg--ggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaag--------atcaagaattgacaaatggga-cctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataag-acaaaaagaccaccaacaaattgggaaa
s HiC_scaffold_1 110469170 3545 - 233722169 aacatacagataagtgaggcatatacagTCCTTAAAAGCCACCATCAGAAAAGAACTCCTCCATGACACATTATAGTCAAAA---TCCATGCAGTCAAACTTAAGGATGGAATCAGTAAAGctgctaaagaaaaa-------caacatctgTTCTGAAGGTAAACAcattagaattacagaaaacttttcaacacaaactttgaaagccaggagagcttggagcgaagaatttcaagccctaaaggaaA--------CAACCTTGAGTGAAatatcttgcaaaactgtcctttaaaattgatgaagaaataaagtctttccatgataaagaacactaAGATTCATGATC-----ATCAATCCAGCACTCtccaaaattttcaaaaacatctTATAAAGAGATAATAAAGCTAATAAA---------------CCCCAAAAGCCTAAAGGAATGAATACATCAGGTAGGATGA--GCAGTTAAGCACAAGGCAGGAGATTGATTAGcaaaattcattaataaaatagCAGGAATATGTCAATATCCTTCAATAATTACTCTCAATGTGAATAATATTAACTCCCCAATTAAGACACACAA--TGACAAAGtagttcaaaaaacaaaaacttaactGCATGTTCTATATCAAAAGCACTTTAGTTCAAAtagaaatttatagacta----------aaaaaatggaaaacaacatttaATGTACTACAACCCTCCtcaaaaaaaaca-gaagtagttatcctattttcagacaaagtggacatcaaattaaaaaatgatcagaagaggtaaagaaggtcactacatattgatTAAAGCAACAATTC---AATAGGAAATGATAATTATAAGCATACATTCACCAAATCACAGTATGCTCAACTTTATGAAACAAACATGACTAGATATAAAAGATTA-GCTAAACATAAACACAAGTATAGTAAGGGATCTTAATACtccactctcacaaat----agatcAGTTAGACAagtaatcaaaaagaaaatgtcagagtTGAATTACACCTTCAAACAAACTGACTTAATAGGTTTCTATGGAGTGTTTTACATAAAAACA---GATTAAACATTCATTCCAGAAGTAGATGGAGCTTCATCCAAAAATATATAGTATACAAGCCCACAAAGCATGCTTACAtacatacaaaagaatcaaatttatcctatgcatattattagattatagtgcaatgaaactagaagttAACGGTAaaggaaaccacagaaattatgca--aatgtgGATATATAGCAATGTATTCCTGAATAATCAATGAGTTatataagaaatcaaagaagaaactaGATAGTTCTCTAAATTAATAATGtgaat------acaacataccagaatgtATACCATACAATGAAAACAGTTTGAAGAGAGa---ttatagctgtgaatgcccacatcagaaaaatcaA-AGCCAGCTAAAGTAATTAATCTAACAGTATACCTCAAGGCaagaggaagacaagaa--aaattcaaatccaaagttaatgtaaagaaggaaattgtcaatatcagaacagaaattaatgatattgagacaaaaa--attat--gaagaatCAATGAAATAAG-AGCTGATTCTTCAGAA----------------TAAACTCACAGCCAGttttaacaaaag--agaaagaaaagattata-ttGATGCAGTTagtaatgaaaaatgtgaaatcccAACAGACATCACTGAAATCCAGACTATTAGTAa-----tctttgaaaacctctactccaataaattggagaattcgGAAGAAACagac----tcctagatatatatgaattaccaaaactgcaCTAAAGAGATATAAACtccctgaataatccaataacaggcaatgGCATTAAAGCATTAAATAAAGA-CTACCAACTCAGAAAAGCCCATGAGCCAATGAATAAACTgcttaccagggattgaactcacaaccttgtgcttggcaggcaggtgcttgtgacactgagctaaaccctcagcccctaaACTGCTTAATTCTACAAGTCCTTCCGAGAGGATATACTGCCAATATTCCTCTAATTATTCAATAGAGTTGAAAGAGAAAGAGTAGTTTCAAAGTCATTCCAGGAAGCTAAAATTACCCTTATTCCAAAACCAGCGAATGactctactaaaaaaaaaaaaataatacatcaaTTTCTttcatgaacatagatgtaaaaatcttcaacaagatcCTAACAAACAGACTATAACATATTATCAGAAAAATCATGCAGCAAGACCAAATaagcttcatcccagggatataAGAACaattcaacatatgtaaaataataaatttagtgTACAACATTaagagaagcaaggacaaaaatcatgtgattaTCT-GATAGACACAGAGAAAGCCTTGAACAAAATCCACC---------------------CTGAAAAACTGGCATAGAAGGACCTCATCTGGATTTGATAAAAGTGATTTA-----------TGGCCAACATCATATCAAATggggaaaagctgaaagcttttactct-aaatcacaaataagacaaagatgttcaaTATTATCACTCCTGTTGAATACAGTACTTGAAACTTTAGCCG---------GGCATGAGAAAGTAGTAAAAGTGATATGCAATAGTAAAGGAAGAAGtcacattatcattatttgcagataacatgatcctTTATGTAGACGACCCAAAAAAT-------------TCCTAGCACTAGTAAACAAATACAG-GAAGTGgaaggatacaaaataaatacaca-aaaccaAT-ATGTTCCTGTACAATAGTAATGCACTCACTAAGAAAAACGTtagaaaaacaataccattcacagtaCCATCAAGAACAATCAAACACTTAGGAAT-ACCCTAAACAAGAAAGGGGAAGACCTGTACAAGGAAAACTGCAGAATTCT---GAGAAAGATCAAAGATGAAAAtaggaaaatggaacaaaatccC-TGCCCCTGGGTAGGCAGAACCCATATTGTAAAAATGGC-ATATTACCAATACTAACACATACTA---ATTTAATGCAA--------AAAATACTAATAGGATttctcatagaactagagaaaaatgccact--aaaattcatgcaaaaccaaaacagacctaGGCTAGCAAAAGTAATCCTGGGCAATAATAACAAAACAT---GTGGAATTTCAAT-CCAGATccaaagttatattacaaagctacagtaat-aaaacagtgtggtactggcacaaaaatagatgtgtggatcaaagaaacagaa-agaggatgcagaaacaaccccaggcacattAATTCATCTGACCTGTGGGAA-GCAGACAGAAGTATACAATGGGGAAAAGATAGCCGCTTTA------GGTGTTAGGAGAATCGGCTATACACATGCAGAATATTAAACCTAGACCCTTATCTTTCACCATATACCATgcaca-----aaatggatcaaagatataaatattgaaacataaatatttaatctgctggaagataaagcaagtaaaactcttgaagacataatggTACA-TAAACACTTTtttgaacagaaccccagtgg---gCACAAGAAACAGCTGCCAACAAGAACAACCTGAAGGGACCCTTATCcaatttaaaagctttt--attgCAGCAAGTAACATCAATAAGAATGAAGCGACAGctcatagaatggaaaa

a score=29955
s chr3            31774405 2170 + 160039680 AAGCCTATGAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAATAGCCTGGACAGATGTTATA----CAGACACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTC------AATTACCATAGATGGAGAAACCAAACTATTCCACGACAAAAA-----CAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATA---------ATAACAGAAA-AAAACCAATACAAGGACTGGAACCACGCCCTA-GAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAA--TATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCT--------------AACAGACTGGCT-----------------------------------------------------ACACAAACAG--------GACA---CAACATTCTGCTGCTTACAGGAAACC-CATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAA--ATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATT--GTCCCATGTAT------------------CCTATC---AGACCACCA---TGGCCTAAGACTGATCT-------------------------------------------------------TCAATAACAACATAAATAACGGAAAGCCAA----------------------------------------------------------------------CATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCT------------------------------AATTTACAAAATCAGAAATGAAAAGGGA-GACATAACAACAGAT--CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC---AACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCAC-AAAATAGAAGTAGAAG-GTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCA
s HiC_scaffold_1 183082675 2313 - 233722169 AAACCTATTGGGATTACAGCAGACTCT-CAACTCATACCTTAAAGGCCAGAAAAGCTTGGAAAGAAAGCTCAGAATCaagctttaaaagaaatcaatttcCAAACCAGGCTGCTATACCCTGCTAAActagctttcaaaactgatgtggataaagatat-------tttcatgataaagagcatctaaagaaattcatgatc-----accaaaccagcactctgaAAGATTCTCAGTGCTATGTTAGAAATGCAATAAATATA----------CCATGCAGTGTGAACAGAATAGAAGACAA------------ACAAAATGGACTCAGCAAAAGGAAAATAGT-------CTAATGATAAGAATAA---------ATCAATacttttcagtaataactctcaaagTATAAATGATATCAAT--ACCAATCACAA--CATAGGTTTGGACCAGGGACTTAGCCCAGTGGCTCAAGCCTTGCCTGGtgaatgcaaggtcatgagtttgatccctggtacaaacaaacaaaaacagtttgACAAGACAGAGAAACAGTATACTGTGTATAAGAAACaacattt-----acaaagaaatttaTTCACTAAAAATTGAAGGGTACAAAACAGTATTCCAAGTAACAAGAACCTGAA--AACAAGCACAACTATCTTTCCTTCTTCTAGACAAAGAGAACTTCAAGCCAAGTCTCATCAGAACAGGCAAAG---GCCATTATGTATTGATTAAGGTAACAATTAAAGAGGAAGATAGCACAGTTACAAACAT--AAGCACCAACTTTT-GTGCTCTCAATATCATAAAGGAAAGACTATCAGATatcaaagatca-gataaacatcaatacAGTTACAGTGGGGAAgctcaataccccattgtcac----agatAGATTGACTAAACAAAAATTTAGCAAACAAATATCACAGTTGAATCAAACTGT-AAATAAATGGACCCAACAGATATCTACAAAATATTCAACCCAATAATAACATAACACACAATCTTCTCAGTAGAACATAGAACTTCCTCTAAAAG-----ATATATAAGCCAATAAAGCATGcttaagcaaatatttaaaaatagaaattccgaCCCATGCAtgttcaatgaaactgaaagccaATTGAAAAACaaccagaggggctggggattgagctcagcggcataagtgcctgccttgcaagcaggcagtcgtgagtttgatccctggtaccagtaaaaaaaaaaaaatgaaaaagacaaaaagaaagaaagaaagaaagaaagaataaaagaaagaaagaaagaaagaaaaacaaccagaGAAATTATGCAAgtacaaagaaattaaacaatatagaCTTGAATAGACAATGAGTCATAggggaaattaaggaagaaattagataGTTTCTAGACTTTAACAATAATGCTTATACAACACACCGAAACTTACAGGtcacaatgaaagcagtattaAGAAGGGCATTTATAGCTGCGAATCCCCATATCAGAAAAGCAGCGTGAACTCACA---------TAATGATGTAcctaaaatttctataaaaagag-----aaattcaagTCCAAAGCTTGT-----GTAAcaaactataaagatcagaggagaaattaataaaattgagaataGAAGAC-----------------------ATGAGCtttttcattgaaagaataaataagatagaCAAAATCTTAACCAGTCTtgccaaaaaa-ggaaagacaaaatctTAACCAGTTTtgccaaaaaaggaaagactcaaatcaatagaattagaaatgaaaaaagatgaaGTAACAGTAGACTACATAAAAAAATCCAGAGGATTATTGACAACTGCTTCAAAATTctgtactcaaaaaaaaaaatagagaatttaaaagaaatgaactgaTTTCTAGATGTGCATGAATTACCTAAACTGGAtcaacaaaacttaaaaaaattgaataatcCAAAACTTGACAACTGTATTGCAGTGATAATAAAAATTCTGCTAACCAAGAAAAGACCAGGACTCTAAAGATTCA-CACTGAATACTACAATGAATTC-AAGTAGATCTAACACCTACATTCTTCAAATCCTTTAAAGAAAATGCAAGGGAAAGAGTATTCT--CAAAGTTACTTTTGGAAGCTAGAATTACCCCGATTCTAAAATCAGACATAAATTCaaccaaacaaagaaaacttCAGGCCAATTTctataatgaacatagatgcaaaattacTCAGTAAGTCAATAGCAAACAgagt---gaaacaaatgaaaaatag-atgCATCGTGAGAAAATGGGCTTTGTTCCAGGAATCCAAGGATAGTTTGACATACTCATATCAGTACATTTAATGTGTCACATAAA------TAAGGACAAAACTCAC-----------------------AAGAGCCTTTTACAAAATCTCACATCTA

a score=47071
s chr3           31774481 3439 + 160039680 CACTAAGAGAACATGAATTCCAGCCCAGACTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAG-AAACCAAACTATTCCACGACAAAAACAAATACACACATTATCTCTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAA-AAAACCAATACAAGGACTGGAACCACGCCC--TAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGC---CAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCG-ACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGT-------TGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGT--------------TATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCA----CATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGG-TGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAAT-TAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT-CAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTC----TGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGC-TTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGA-AAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgt-aaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattag--------------aaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaa--aaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaact-----------------tcacataaaaccagagacactgaaacttatag------aggaga--aagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactg---taagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattaccta-----tcctaaatcaaataggggactaatatccaacatatataaag-----------------aactcaagaaggt
s HiC_scaffold_1 18788890 3215 - 233722169 cactaaaagaaaagaaattataaccCTGACTAATATATCTA-CAAagttgtctttcaaaattgatttaaCAAATGGGAACTTTCAATCACAAAAAACAGCTTAGAAATTCATCACCATTGAATCTGactc--caaaaaattctcaaggatatccaACTAGAGCCAAAGATGGCAGAAAGTCTAGTGGGTGGGGTAAATAGGTAAGCAGaagggggaaaagaaaggaaccggcaacagaaacataatgaatgcaatttcaa----------aacag------attgACACCTATCAGTAATAACTCTCCA----AATGGTGCAAACTCCCTAATCAAATGAGAT-TGCTGTC---CTGGCTAAA-AAAGATTAAGTCGTATGGTATCCTCTATACGAAAGACAATCCAAAAATAAACTCATGGACTAGAT----ATAAAAGTATGGAAAGCAATATTCTATGCAACTAAAGCCTAAAAATAAGCAGGAACGGTTATCCTATTTTCT--CAAAATTGTGCTTTAaactaaaactgatcagaagagggaaagaaaatcatGGCTTATTGGTTATGGG-----------------------AAATTCaacatatatatgttatatat--------atttttatgtattatatatgttgtaatatatatatatatatatatatatatatatccctcactcacacata-------acttcataaaacaaa---cattactgGAC---CCGAGAGATTAGATAAACAACACAATTACAGTTGGACAACCTCAAAtattagttatttatttgttgaacaAGTGGAcctaatagatatctacagagtgtcc-ATTCAACAACAA-----CAcagattcttctcagcagaacacAAAACTTTCTCCATA---GACCATATATCAgcccataaagcatgctt-aataatta-aaaaatatc--agttaTCTC-TAGCTTATATCAAATTATAgtgcaataaaactagaaatcaa-gccaaaaaaaatcagagatattATTGAAATACAAGgatatgaaataata-tattct-AATAATCAGCAagccacagaagaaatcaagaaagaagtgATAAAACTCCTGCCGTCAAATGATAAAACTAGTATAGCACAACATATCCTATGG-ATACAGTGAAAACAACCCTAAGAGTAATACTTATATTTATGAATG--TCCATGAAGGAA--AAATAGAGCAGTCCCAAACAAATAACCCAATGAT----------GTCCCAGAAAAGCAAGAA--CAACTCA------------AagctactgtaagaaatgaaacTTAAAGGATGAGATTGG--AAGTTATGATatggagaatga---aaaaaatacaacaaattgaAGAGctcattctttaaaaag-----taaaatttacaagCCCTTAGCCAGTCTtaccaaa------------aaaagttaaaattatag-----------------------------------ctattaaaatccagaagatcattaataactactttgaaaacatgtTCTGTATTAAAATtgaagaa----gtcaaaagaaataccTTTCTAGATACATGTACATTGCCAAAACgaaaccaagaaaatataaaatctctGAATATTCCAATAGCA-----GGAAATAAAATTGC--AGCAGTAAT------------AAAAACTTA---CCTGATAGATCCATTGTTGAATTTTACAAGAACTTCAAGATgaatttaatgccaatattcttCAAACT-CTTAACGAAACCAAAGTAGA--GTACTCT--CAAAATCATTTCTAGAAGCTAGCATCACTTACCGTGATTCTAAAACCATTGAAGGACCCGAGTAGGAAAGAAATCCATAGACCAATCTCTTTAACGAACATGAATGCAAAAACTTTCAACAAGATTCTGGA-AACAGAATGGGACAGATCATCAAAAAGAATGTTTACCGTAACCAAAATGGCATTAATTCTAGTGATATAAAGATGGGCcaacatttgcaaatcaataaatataataaactaCGGACGCAAAAGCTAGGGCAAAGATCATATGATCATCACAACAGATGCAGAGAAAAATCTTTGAGAAAGTCAaacacccattcataataaaaaccctgaagatcta----------------atctcaatctgataagagcCATTTCTGTTAAACC---TGCCAATATCACACTAAAATGGGGGATGCTGAAAGAATTTCCTGTAAAATTggaaagaagacaaggatgtccatgatCACTGTTTCTATTCAGTGTAGTGCTCAAAACATGAGCTAGAACAATCAAGCAGGAGAAGAAGATAAAAAGGAGATGTGTGGGAAATAATGAAGTCAA---gttactatttgcagatgatttgatcctttata----------taaaaattcCACT--AAGATTCTTAGAGTTGTTAACCATGTTCAGCAATACAGTAGGACACAAAATTAACATACAATAATCAGTAGAATTCCTGTGCACCAATAACACACTcatagagaaggaa-------aaataataccattcacaatag-cactgAGAAAAAGTAATACTTACAAATTAACCTATCTAAAG---------------------AAAACTACAGCT-Tctgaa-aaagagatt---gaaaataCCAGA------------CCTCTTTTTTCCTAAATAGGCAGAACCTATATTGTGAGAAATAATCATACTTTCAAAACTAATATATAAGTATCATGTAATCCTAATAAAAATGGGaccagcattcctcacagaactaggaaaaaaaaaaaaaaaaaaacaatcctaaaagtcatttggaactagaagagatcCAGCATAGCAAAGAAATCCTGGTCA---ACAGAAGCAAATCAAAAGTCATCACAACTCcaggtttcattttatattgcaaagctacagtgacaaaaacagcattCTGTTGGCACAAAG-CAGATATGCAGGTCAGTGGAATAGAAGAGAGCTTGCAGAAATGCCCCGAGGCACATTCAGCCATGTGATCTTTGACAGAGGGACcaaaaacctacactggagaaaagataacCACT--AACAAATGGCACTGGGGAAAATGGCCATGCATATAAAGAAGACTG------------TATCTCACcccatgaaataaaattaa----aagtggatTAAGTatctaatattaaaacagtatctaatattaaaacagaaa-acagaaacatgtagTCTATTGGGAGATGAATTTGGTAAAA--TTCAAAGATACAGGACTAGGTAAGGATTTTCTGAGCAGAACCCAAG----TTGcacagaaataacatcaagaatcaacaaatgaggtTACATCACATT--AAAAGCTCTTCACAGTAAacaac-----cagcagagtgaagagtcaatctacagaatgggaaaaaaattttacccagctactcc----tcagacagagaacTATTGTTCACCGTATGTAATGGATTGTCAGCCACCATCAATTCAAGAAGGT

a score=75974
s chr3            31774603 3604 + 160039680 CCAGCCCTTCAAAGGATAATAA-----CAGAAAAAAACCAATACAAG-------GACTGGAACCACGCCCTAGAAAAAACAAGAAGATAATCCCTCAACAAAACTAAAAGAAGACAGCC--ACAAGAACAGA----ATGCCAACTTTAACAACAAA---AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGT------CTGAA----GAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTT-CAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATT----GACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCAT-AGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAA------------------------AGCCCAG---------------------------------------------------------------GACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGA---------AAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATC------------------------------------------------------------------------------------------------CTGACCAAGTAGGCTTTATTCC-----AGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGAT-AAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctcta---tacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaat----ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct-----caaggataa---aagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgg-gcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattaccta-tcctaaatcaaataggggactaatatcc---aacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaac--atccttaatcatcagggaaatgcaaatcaaaacaaccctgagatt----ccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaat
s HiC_scaffold_1 133185516 3629 - 233722169 CCAGC---TCAGAAGATAATAAATGCtctaaagaaaatacttaaaaatattcttgacagaaattataacacagaggaaactaGTGAG--ATCAATggataaaaatcaacaaaaacagcagaagaaaaacaaaggtcaGGCCAACA--GACAAAGAAGACAATGATAGTAAATAATGAACacatcacagtaatatatgtcaATGTTAATGGCCTCGATTCTCCAAAGAAAAGACACAGACTAAAAGATTAAATCAAAAAACAAG-TGCAACAATCTGTTGCATTTAATaaactcatctaatccaaaaagatattcatagactaaaaactaaatgatggaaaacaacattctttGCATTTGTTGTTTTCCTGAATCTGAAAACAAGCAGGAGTAGCATTTCTAATATCAGATATGGTAAACTTTAAGctaaaacagattagaagagacaaag---gtcactacatactagttaagggaacAATCTGACAGAAGGA--TAAAATTGACAAATACATATACACTGAATACTAAAGTGCCAATTTTCATGAAaactgctgaaattaaa---aaatcaaaca------ctaaCAGATTCACAGTGGGGGAATTATAACACTCCACTTTCACAAAGCGATGAACT----aaaca-aaactaataaagaaTTT--TAGAACTAAACCACACCTTTGAAGATACGGACTTAATGGATATAAACAGAATACTCCATCCCTCTATAACAGAATGTATGTTCTTTTCAGCCT---atggtagtttaaaaaaaaaaaaaagattacatgcTAAACCACAAAGCCTGCTTAAGTgaatataaaagaacaaaaattactgCATGCATGCTATCCAACCATTCtgcaatgaaaacagaaatcaatgacaagaaatttcagaaaagacaaaaaagaatctaGAAAATTAACAGTAtgctcctgaa------------caaccaatgggttatagaagaaattttaaaatttctggaagATAGTAACGATGACAGTACAATGCACCAAAACCTCTGAGACActatgaaagcagttctaagacaAAAATTTATCAACAATCAATGTTCACATTA-------GGAGCAAGCTCAAGTAGACCACCTTAAGAGAAATCTTAAGATActtgacaaaca--aaacaaaccagctCAAtt---------------------ccaaattaaggaaggaaattttacagatgaaa------------------------------------------------gtggaaatcaatgaaat--------------tcagactaaaaaggactcaca-----------ccaatGCACtta---------gaaaaagaggaaatcacAATAGATACTGTAGATACTGAGAGAATAGTTAATaagtactttgaaaaattatattccaacaaattagcaaattttgaagaaacagacagattcctagacatatACAAACTACCAAAATTAACCCAACAAGGTATAAATATGCTTAACAAcccaataacaagcaatgaaattgacaTAGTAATAAAGAATATGCCAACTAAAAAAGGTAGcaccaagggccagggatatagctcagtggcacagtgactgCCAGCAACCCTGAGATCATGatttcaattcctgatacaaaggGGGGGGGGACCTGACAGATTCACTACTGAATACTAAAAAACCTTTAAAGATGTTATATCATCAATACACCTCATGCTCtttaa-gaaattgaaagggatgaAATGATCCCAAAATCATTTATGGAAGCG--TATCATTCTGATCACAAATTCATTTATGGGATCTCAAAACCCAACTAACAAAGAAAACTATAGGTCAACCTCCTTAATTAACATAtttgcaaaaatcttcaacaaggtattaacaaagagaatgcagcaCATTATCAAAACGATCATACATCGGACTAGGAATTAAGCTCAGTGgctaagcatctgcctggcaagagcaaggtaatgagttcaattcctggtaccaaaaaaaaaaaaaaccatacatcatgatcaagcaGGTTTCATCCCCTTGCAGAGATGCAAAGATGGCTCAACATACGTAAGTCAATAGATGCAATATATCACACACCCAGAAGCTACGTCAAAAACTTTATGCTCATATCAACAGATGTAGAAAAGGC-TTTCTCAAAATCCAACATCCCTTCA------------GAGAAAAACAGATATT-AAGGGCCATACCTCAATATGACAAAAAGCTACATATAACAAACCAATAGCCCACATCataataaatggagaaaaattaaaagtatttcccTTAAAACCAAGATTAAGATAAGAATGTCTACTATCACCTCTTCTATTCAACTCAGTACTTGAAGCATTAGctagaacaattaggcaagagaaagaaataagagagacaCATATAggaaaa---gaactcaaaatatcattatttgcaaatgatatgatgCTTTACACAGAAGACTTAAAGATTTCCACTAAAAAACTGTTAGA----ATAACAAACTTCAGCAACATAGTAAAATATAAGATCAA--TACACAAAT-ACTAGCATTTGTGTGCACCACACCAAATAACCAGGattagaagaaaattatgaaaataccaCTATTAACAGtagtttcaagaaaaataaaatatctacgaATTAATCTAATCAAGggagtgaaagatctatacaaagaaaactacgtacagtactttgaaaaaggagattgaagagaacatcagaaaatcaaaagatgTCCTCTGCTCCTGGACAGGCATAATCAGTACTGTCAAAATGACTA-CATccctaaactgttatacagaATTAATGCATTCCCAAGCAAAATGCCAACAGCATACTTTACAGACCCAGTAAAAATaatcctaaagttcatatggaaccagaagagacccagaaggcCAAAAAAAATTCTGGGCACAAGAACAAAGCAAGAA------GTAGAG----CATACCTGACTTCAagctacactacaaagcaacagtgattTAAACAGAATAGTaatggaacaaaaacagatacgTGGATCCACAGAACAGAACTGAGGATACAGAAACTTCTCCAAAGatattcaactatttgatctttgacaagggACTAAAAAGCAAATGGTGGAAGAAATACAGCTTATACAACAAGTAATGCTCGAGAAACTGGTTACCTGTGTGGAGAAGAGTGAAACTAGACCTTTATCTCTCACtacatactaaattaaaatcaaaatgaatcaaagatttaaatattaaaac--aaacatcaaacctactggaagacaaaaaagtaaaaa----tgaagacatatcatgtaggaaaggattttctaaatagAACCTCAACTGctccagaaataatagcaaaaatctataaatgagattatatcaaactaaaaag---ctatACAACAAAAGAATTAATCAATAGAacgaagagacaacctacagaatgggaagatgttgccagctactcct--------cagagaactaatatctagaagaatatataaagaactcaaaaaaattaaatcaccCAAAATTAAAGTTCAAGTCgagaaatgggcaagagaaataaacagatactt------taGGGAA-------------AGAAATGTACGAAAAG----TCAACAAATAtatggtcactagagaaatgcaaatt-aaacaatgctaagattgatcccatcttactccagaaagactggcaatcattaagaaatca-ataataacaaatgttggtgaggctgtggcgaaaaaggaatcctcctacattgttgatgggaatgcaaactagtacaaccattatggagat

a score=50600
s chr3            31774687 2583 + 160039680 AACAAAACTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAA-CAAAAATAACAGGAAGC-----AACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGC-TTACAGGAAACCCATCTCAGGGAA----AAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAA-GACACCTT-----AGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAA-TAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAA--GCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTT-------TAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGC--TTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAAC--TATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTT--------GAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC-TAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT-GAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA--AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataa--actcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagca
s HiC_scaffold_1 121915835 2479 - 233722169 agcaacaacaaaaaatgtcaacaaaagaaagacaaaggatTCATCAATAAACAAAGAAAGCAGTGTACTAGCTAATAATCAACACATCTTAGAATATATCTCGGTTAACAATCTAAATGctccaattaaaagaca--gatTGGAAGACTAGGT-CAAACACATAATTGAAAGGTctgctgcattaaaaaaaa---atgtcatgtaATCCAAAAGATACATATAgactaaaaatta---tttcaaaaactgTATTTCAAGAACTAAGACCATGAAAGCAAGCAGTAGCAGCAATTATAATACCAGATATAATAAACTTCAAGCTAACACATGGTAGAAGAGACGAAGAAGGAAACTACATTCTAGTTAAGGGaaaa----tccaagaagaagagatattGATAAATATAAACGCTCTAAATATGGGAATGCCTGTGTTTATTAAACAACAACTGCTGAAATTAAAActtcaaataaaca------ctaacacagtGAGTATATGGGGATTTTAACTCCCAGCATTC-CAAAGagatataacaaataaacataaaataaata-----acag-------agcTGAAACACTCGAACAGTTGGAATTAACAGTTATATACAGAGCATTCCTTCCCCCTATAGCAGAGTATGCATTTTTTTCAGCAACTCACGGTACTTTTGTCAAAGTAGATCACAGACTATTCCACCAAGcctaattaaataaatataaatgtactgCAGTTA-CCCATGTATTTCATTCGAACACTGT-GCAAGaaagtagaaatcaatgacagaagAAATGGTGGAAAAGGCAAAAGTTCC--TGGAAAAGTAATAATAtactcctaaacaaccagtggtTCACAGAAGAtatcaaaaaagaattt------ttttagaaatatggaagttaatgaaattgattgtacaagtaaacaaaacctTTGGGACACTATCATAGCTGTTCTGATTGGAAAGTT--TTGCAATTAAtactcacattagaaaaacagaggaaatcCAAGCAAACAcctttttttaagaaatcttaagATACTTGACAAATAACAAgctaa--------------------ggaaagaaattataaaagtaagaGTGGAAATTAA-TACTTTGAGACcaaaataacaatatgaaataagtCAGCAAagcaaagagctggttcttcaaaagactaaataaaatggACAAGCTCTTAGCAAAAcgtactaaaag----aaagaaaagattcacatAAATGCAATTAGAAACCACAAatatgaaatcacaacagatactACCAAAACCCAAAAGA----TAGAAACTATTTTGGAAAGTTATATTCtaacaaattagaaaattttaaagaaatggagagataGCAGAGCACATGCAAACTGCCAAAACTAGCCAAGAAGATATGAATATACTTAACGATCCAATCAC--------------AAGcaata-aaatattcagtaataaTCTACCAACT--AAAAAGCCTAGTACTTATTGGATTTACAACTGAATTCTAT--GAATTTCTAAGGATATTATATTATCAATACTCCTCAAggtattaaaagaaatttaa--agaatggAGTGCTCCCAAAGTAATTTATGGAAATCACTATATTCCTGATCCCAAAACTAGATAAAAATGTAGCGGGAGAAGGGAACTATTGACTAGTCtcttaaatgaacaaaaatgccCAAATTCTCAATAAcacattggaaaataaaatgtagtatatTATCAAAAGCCtaatataccatgatcaagtgtgTTCCATTCCAGAGATGTAAGAATGGTACAATAGATGTAAGCCTATAAATGTAATAGATcatattta-aaaagcaaggtaaaaaaccacatgatcatatcaatagatgtag-aaaggcttttgacaaaat-cATCACtacttcatgataaaaatccttgaataaaataagtatagGAAGATTATACCTGGATATGATAAAAGCTACCTATAACACGGCAATagccagtattatactaaatggggAAAACCTAAAAGCATTTCGcctaaaatcagaaagaagataAGGATGCTCAGTATCACTTTTTCTAGGCAACATAGTA-TTGAAATATTAGCCCAAACAGTCaaacaagagaaacaaatgaaagagatacaTATAGAAAga---gaactcaaattatcattgATTGTAGATGACATGATGCCCTATACAGAAGACCTAAGTAACTCCACTAAA---------------------AACTTCAGCAACATACCAAATCATAAGATCAGTACTCAAAAAA--TATTAGGATTTATGTATGCTACTAATTAAC-----------------------TCAATACAATTCACAGTAGATTCAATATAAATGAAATAGCTAGGATTTAACTTAACCAAAGCAGTGAAGGACCAATA-AAAGATAATTCCAATGCTCTGTAAAAGGAAATTGATAacaatatcagaaaatagaatgatATCTCCTGCTCCCTGCTAGATAAAACCAATATTTTCAAGACGatcatactctcaaaactgttat-cagattcaatgcagtcccaatcaaaattaCTACAACATACTTTACAGAACAGGGAAGAATA

a score=9119
s chr3           31774691 1775 + 160039680 AAACTAAAAGAAGACAGCC--------ACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACA--ATTACTTTTCCTTAATATCTC----------TTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCA--TCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGT---CTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACC----------ATATAATTGGTCACAAA------------------ACAGGCCT-------CAACAGATACAAAAATAATGAA--ATTGTCCCATGT-----------------------------------ATCCT-----------ATCAGACC-----------------ACCATGGCCTAAGACTGATCTTCAATAACAACAT------------AAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAA-AATGAAGCCACAACGTACCCAAACCT--------------------------------------------------------------------------------------------------------------------------------ATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA----AGAAGAAACGGG------AGAGAGCACATACTAGCAGCTT---------GACAACACATCTAAAAGCTCTAG--------------------------------------AAAAAAAGGAAGCAAATTCA--------------------CCCAAGAGGAGTAGA------------------------------CGGCAGGAAATAAT--------------CAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT--TCAAAG---AATTAACCAAACGAGGAGTTGGTTCTTTGA-GAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGG--ACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATC---CTGAAGAAATCCAAAACACCATCAGATCCTTCTACA-------AAAGGCTATAC------------------TCAACAAAACTGGAAAACCTGGACA-----AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTT------------------GACCATCTAAACACTCCCATATCACCTAAAGAAATA------------------------------------GAAGTACTTATT-------AATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAA-CTCATTTTA-TGAAGCCACTATTATTCTGATACCTAAA-CCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCT-----CTT------------------------ATGAATA--TAGATG---CAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAA
s HiC_scaffold_1 23623643 2207 - 233722169 aaaggaaaaggagGCAGTATAGACTggagaagaacaaaa----aaattta----caaagcacTCAGAAAACAATACCATTACTTTTTCCT----TCTCAGTCATTACTTTAAGATTAATTAGATCAAACT--------AAAGGCAGAGATtagcaaaatgaattaaaatacacACTCCAACTATATGCTATCCataaaatattcactttttatctaaagatacaaaataaacttttaaagcaAAGGGTTGAAAAGGATATTCCATGCAAACAATAACCAGAAGAGCCA-----GAGTGGCTCTGTTAAGTTCAGACAAAACAGGCttttagttaaattttttt------tacaagAAATAACATTACACGTTCTTAAAAG-----AATCTTCAAGAGACATAACCA------------TATGCACATAAGACATACGCACATACAatctcaaaatacataaaaatgttgaccagaaagtgagaaaaaattCTC----CAATACCTAGAGGTTTTAATATATTAACTGCAATAATGGGTAAA-CACCGAAACAGAAGATCAACAGGGAAATA-TAAGATT--TTGATATTACTGATCGACTAGACTTAATAAGCATATATAGAACACTCCACGCAATAGCATAAA-ACATCCGTACTTCTCA--TGCACATCAGACATTTTCCATGATATACcgtaatacaaaataaaatcaataataaattccctgggtttggtggcacacacctgtaattccagcactcacaagactgaagcaggattgttacaagttcaaggctagctgaAGCTATTGAGTGattaagatcagcctgaactacataaatgagaccctctctcaaaaaacaaaaacaaaatttaagactGCGTGACAATAATGAAATGTGAAgtcaagaaaatgaagaaaaatctataaatatgtagaaattatgcaacacact---caaacatacaatg---aaagaaatcacaaagaaagCGTGT---GACTATTTAGAGATCAATATTTAGAGAAAacacaacataccaaaacttttagaagacagcaaaaggggctggggatttagctcagcggcataagcgcctgccttgaaagcaggcagtggtgaattcgatccctggtaccgataaaaaggaaaaagacaaaaaaaaaaaaaaaaaaaatagaagacagcaaaagtagcgCTCGGATGGAAATGTATAGCTATAAATGtctgcatttaaaaagaaaatgatctccaaggtggcacatgcctgtaatcccaccactgaGACAAGAggttcacaaattcaagtcctTCCAGCCTAACTTTtcaagatcttgtctccaaataaaaaaatagggcTGGTTCAGTGATGGTTTGATACCTGatactgaggggaaaaaaaactgtAACAGCCCACTTTACACCATCGAGTGATacaaaaagatgagaaaactaaatCCAAAGTTAGAAGTGAA-TAATAAAAAttgtagcaaaaataaataaaattaaagccaAATCAATGAAACTAAAGGTTGACTCcttgaagaaaaacaacaaaactaacAAACCTTTAGATAAAATGTCTAAGAAACAAAGAGGAACAAA---TGGAtgaataaaatcagaa--taaagtGGTGATATAGCTACTAACCTCACTAAATAAA---AACAGACTATAGGCAACTACTATATAGCCTAAAGAGTTACATGTGTGCCACACCAGGCATTCTAAAAAATTCACCATCACTGACCTAAGTAAATtgataaattcctaga--aacacagaTTACTTAAACAGACTTAAGAAGAAATTATAGTCTAACGTGTGGGAGGCCCTGTATATTCCTcaacactgcaaaagaaaaaaaattaaagatctcCACAGATCCATAACAATAAGGttgaattacaaatttaaaaaaaaaaacctccctaGAAAGAAAAGTCCAGGACCAGATGGCTTCACTGTTGAAATCtactaaacatttaaagaa---ttaacagTACTCCTGTCAAAACTCT---AataaacagaagaggaaaaaatgcttCCCAAACTCAATTCAGTGAGGCCAGAATTACCCTAATGCTAAAAACCAGATAAAGATAACACAAAAA-----AATTACAGAGCAATGTCCACATACTTGAAAAAAATGCTgaaccaaagtaaataaataaataaataaaataaaaatactgaacaaa----CAGCAAACAGAATCCAACAGCATATTTAAAGGACTATATATTTAGACTAAGTAGGTTTTATCCTAGGAATGCAAAGATAGCTCAA

a score=56307
s chr3            31774697 2595 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACA--GGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAG--TGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCAT----TAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAA-----------ACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAA-AACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTC-ACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAA-CACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCA--AGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGA--AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATA-ATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACC-----------------ACAGAA-------AGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTT-ATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAAC-------CGAATCCAAGAACATATTAAA----GCAATCA--TCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT----AAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaata
s HiC_scaffold_1 154830298 2418 - 233722169 aaaaaagccA---ACAGAGAAAGAATGC----------------AATGACAGGAATGAATCAGTACCTTTCAGGAGTAACTCTCACTGTAAATGACCTAAACTCTCCAATTAGA-GACACAGATTGG-AGAATGGAT---CAAACAATGAACCAAATGGTCTACTGTATTCAAGATcctcatctaatccaaaaggaaacacatagacTAAAAAAATTGAAGGATAAGAAACAATATTACATGAACCAGCCCCCCAAAATCAAGCAGTAGtagaagttttattttcaaagaaaataaattttaagctaAAACTAattagaaaaggcaaagaaagtcactacttATTAGTTAAAGGAACAATTTCACAGTAATAaataacaattattaatataCATGCACTGAATATTGGGGCAcctaacttcataaaacaaatactccTAGATATAGACCATCAAATAAATACCA----ATATAATCATAGTAGGTAACATCAAGACTCCACTTTCACAGAtacacagatcaactagacaaaacatTAACAAAGG------------AATATCAGTTCTGAATCACACCTTCGACAAATGGA--TGTAAGATGTTTACAGTGTGTGTCACTCTAGTAAaaacagaatatgcattcttctcagtagcacatggaaccttctccaaaatagaccatct--TTAGTCTACAAAACCTGCTTAAATAAATACCAAAGAATCAAAATCACATCATATATAACATCAGATCATAGCACATTGAAACTGGATATCCATTGCAAGAAGAACTACGGAAATTTTACAAACACTTGGACGTTAAAAAAACACTCTTGAGCTCTCAGTG-------GGCCACAAaaggtatcaaaaaagaaag-aaacaatgagtAGACTCAAATGATAGTGTCAAAACAACATACCAGAACCAATGGGCCACAGTGAGAACAGTACTAAGAGGGACATTTCTAGATGTGAATGCTCACActaaaaaaacagagagagagatcaaataaataacctactgATGCACTGTAAGTAACTAGAAGAACAAGATCAGTTCAATCACTGCTTAAGA-------ACAGGAAATTCATAAAATCAGAGCCAAAAAtaatgtaattgaaactaaaagaga-ataaaaagaatcaatgagttgaagagctggttctttgaaaaa------aaatgagacaaaccCTTAGGCAAACTTaacaaaagaaagagggaaaagaaccatatcaatgcaattagaaatgaaaacat-gaaattaCAACAGATACTATGGAAAGCCGAAG-ATCATTAGTAACCACTATGAAAAATTGTAGACCAATAGATtggaaaatcttgaagaaatggatggatgcttagattcatatgaattactaaaactAAACCAAGGAAACATAAAACTTCTGAACAATCCAATATTAAGCAAAGACATTGAGGCAGTAATAAAGAGATCTACCAACTAAGAA-------------------TTGAATTGAAAGGC--------------AAGAATATCT----------------------------------------------------CCAATCTCATTTATGGAAGCCAGTATTATTCTAATTCCAAAACCCAGATAAAGACATAATTACAAAACTAAACTACACTAAACTAAATAAAAGAACTAGTAGTCAATCTTTGTTAATGAACATGGACACataaatcctcaaaaagatactgGCTAACAATGgaacaaataataaaacagactatacatcatgatcaagtacaTCATGCCCAAGTAGGTTTAATCCTAgggatgcaaggatagttcaacatagaCAAATCAACAActgtaatacaccacataaagAGAAGCAAGGACAAGAACTACATGATCTTATCAGTAGATgaggaaaaagcttttgacaaaattcaaca-tcatttgtgatttaaaaaaactctgaagaaaatagatacagAAGAACCTaaactcaatctgataaaagccatttatgacaagccaacagctaatctcatattaaatggggaaaagctAAAATCA-------------CAAAGA----ACCAAGATATTCACTTTCACCATTCTTACTCAACATAGTAC-------ATTAGCGAGAACAAAAAGGcaacagaaagatagaaaaaggatacatataggaaaggaagaagtaaatttATTA---TTTGCA-ATAACATAATCTTACACATAGAAAAAcccaaaaa-tccaccaaaaggTTCCTA---------------------GAAGTAA------------------TAACCAAATATATGG---------ACACCAACAATGAACCCACCAAGACAGAATTGAGGGAAATattaccattcacaatag-caccaaaaaaattaaatactttgatATTAAtgtaaccaaggaaatgaaaa--ccATAGGAT--------------TCttaag---gagatcaaagaagacattagaaaattgAAAGTTATCCCCTGTTTCTGGATATGCAAAATCAACATAGCTAAAATAACCATACTCCCAAATGGA-TATATAGAGTTTATGCAACCTCAATCAAAATACCTACATAATtcctcacagaaatagagaaaataatcctaaaatgtATATGGAATA

a score=82963
s chr3            31774713 3782 + 160039680 AGAACAGAATGCCAACTTTAACAACAAAAATAACAGGA--AGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAA--CCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG--TCTGAAGAAACAAGAT--GGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAA-TATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAA-AGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCT-TCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACAC---ATCTAAAAGCTCTAGAAAA---AAAGGAAGC--------AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTT---TGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattct--------accagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttact-------acagagcaattgtgataaaaactgcatggtactggtatagaga----cagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagag-gagaaagtg------------------gggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgt--actgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcatt---acctatcctaaatcaaataggggactaatatccaacatatataaagaactca------agaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga--------tgccccaacg-ggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtgg---tacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggca
s HiC_scaffold_1 112386527 3689 - 233722169 AAAAAAGGaagccaac---aacag-aaaaataacatgatgagtataagtcaatat------atatcagttataacca------tcaattcaccaatcaaaagacacaggctggcagaatggatcaagaagcaagagtcaacaatatgctatatataaaaaaaacacatttaattcaaaaagaaattca-tagttaaatgtcaaaggatggaataaaacactccatgtgacaggaacctggaaaaaaaaaaacaggagaatcAACTCTATTTggagacaaagtgaatttcatggTGAGGGTGATTAagagggataaagaaggtcactacatccttgtaaagggaatattccaagaaaaagagatgataatcataaaatatatgcactc-aactacatgaa-----acaaatattaatggacat----gaaaaatcaaaaaagcac--------tAATATAATTGTACTGTGGGATctcaatacctcactgtcacaaaaagatcaat--tagaaa---aaaatcaacaatgaaataatagaattgaactaagcttttgaacaaatggatttagtaaatGCCTACAGAG-----TGCCCCcctacatcagaatatacatttttctcagttgaACACAGTATGGTTTACAGACTAAACCCCATACTAGTTCAGAGAAcatgattaaataaatgcaaaggaattaaaatt-----atgcaTGTGATCagaccatagtacaatgaaattgaaaaattagTGGCAAATGAGATCAGAACAACTTCAGAAGcagatggaaattaaataacaccttgcTAAACAACccataggtcacagatgaaattaaaaaggagattaGACAGTCTCTACAATTAAGTGAG--TGCTGATAAAACATACT----------AGACACAATGGAACCATCCCCAAGAAGGAAATTGATAGTCACGAATACCTATCTCAGAAAAATTGAGTGAACTCAAATAAGCAACTACTCAATGTTgaacttcaagcttctagaaaaggaagagcaggcCAAGTTcaaagctcatacaagaga------------gaaattatgaggATCAAAACAGAAactaatgcaatggagactaagaaaacaatgcaaacaatcaatgaattgaagagttggttgtttacaagattaaataaaattgacacacccgtagccaaccttatcagaaaaaggaaagacaagactCATATCCATGTAGTTGGAATAAAAAGGTCAAAAATCACAATGGACTCTTCataaattcagaagatcat--gtaTATCACATTGAAAGTTGTACTATAGTAAGATGGAAAgtgcagaagaaatggatataTTCCTAGATTtatgtgaattaccaaaactgaagcaagaagatataaaaatcctaaataagccaatatcaatcaatgaaatcaaagatgtgaTTAAAAGcctgccaacaaagaaaatcc--agccCTGGTTAAtttattgctgaattctacaggaaatttagagaaggtaTAACaccactactcctcaaactctttaatgaaattgaaagggaagcaatattcccaagtttgttcctggaaacaagcattactctgatattcaaaccagagaaagacccaaacaaaaaagagatctacaggccaatctctctaccAAATATAGATGGAAAAATTCTTAGTAAGATGCTAGCAAacataataca-gaaaataatcaag--attatacaccatgagcaagtAGAATTCTTCCCAGTGATGCAAGAATGtatcaacatacacaaatcaataaatttaacatGCCATATTAATAGAACCAAGGTCAAAAAGCATATGCTCATCTCAATAGGTACGCAAAAAGTTTTTGACAAATTCCAGCA-CCACTTATGATAAAATCCTTACTGAAAAAATTAGAATAgctggtctttatctcaatctgataaaagccatctata-caAATCAACACCCAATATCATTCTGACTAGATAAAACCAGAAAGCTTTCAATTTAAATTTAGGGACAAGACAAAGATGTGCACTGCAACCCCTCTTATCCAGTATAGTTCTAGAAACTTTACCCAGAGGAATTAGagccaagaaagaaataaaaggaataaggataagaaaggaagaagttaaatcggCATTATTCATGAGTGATCTGATGCTTTCCATAGCAGACCCTAAAGACTCTTAGATTTctccaaaagacttttagatttacTAACCAATTTCTTTGgcatggctggatacaaagtcaacaataaaaaatcaatagcctttctgTACATTAATAACAAACTCaccaaaagagaaattagggCAACAAAAGttctcacaatagcatccaaaaaagttaaatacataggaatcaaactaacaaaggaagtagaagacctctacattgaaaactacagtactctgaaaaaagagaacgAAGAGAGTATCAGGAAAGGGAAAGATATCC------CTTGGGTTGGAagaactaatatagtgaaaatgtccatacttcCACAATTATC-----------ATGCGatttcaatcaaaattccaacagcatatctcatagaactagagaaaacaaccctaaagttcatttggagccagaaaaaacctagaatagcaatggtaattctgggaaacaaaggcaaaacagaGGGCACCACAATCCCAGAATTGAAATTATGCTCAAATTCACAGTGCTACC---ATAAAAAGAGcatgtaacagaaaaaaaaaaaatcagacctgagaatcagtgaaataggttggaagatggagaaacaaatccata-----------------------acaaaggggccaaacatgttctctggaagaa----aacctcttttaaaaatagtgatgcaaaaattggctttctacatgccaaggattaaaattaaatccata--------------------------tgaaatggatcaaagatctaaatatttagaCAGAAAAGATTAAATCTGTTGGGAGATACAATACACTATACTACACTACACTacaaaactcttgaaaacat-tatgcagccaaagattttatgaacaaaatcctgatcaCATGGGAActgttaca--aagaatcaacaactgagatataattttattaaaaacgttttgcacagcaaaagaaaccaccagaagagtgaagagacaagtcacagtagggaaaaatatttttccagctcTTCCTAAGACAAA----GAACtactctctaaaatatataaagaactaaaacaacAGAAACCGAAATTCCCAAgtgtaaa-gacccaatccaaaaatgagcacctaaaatgaatata-cattctcagatgaagaaatacacacagcaaataaatacataaaaaaat-ttcaatatcacttgttattcaagagatgcaacttaaaacaatgctaaaattccatctcatcccagaaagcatggttattattaagaaatca---acaaattaaTCATGGCAGGGATGTGGGGAAC-AGAAACTCTTTTCCAGTGTtagtgggggtgtagactggtgcaaccattgtggaagtcagtgtggataTTCTTCAAAAACTGGGACTGTTCATTTCCTTC-AACCCTACTATTTCTCTTCTTGGTACCTTcctgaaagaagtaaaagtacCACATCACAGCAATAGAtatacattc------atgtttatagtgacacagtttgtaatagc--agtcttggaaacagtccaaatgttCCTCAACTGGTGAGTGaata---aagatgtggttttttttttatgcaatggagtactattctgccagaAAGAAGGCTAAGTTCAAGAAATTTCTAGGCAAACAGGTGCACCTTGAgatca

a score=4439
s chr3           31774731 120 + 160039680 TAACAACAAAAA------TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAA
s HiC_scaffold_1 83822509 126 - 233722169 taaaaaaaaaaaaatgtataacagaaTTGAGAAAACACTTTACAGTAATAATTCTCAATGTCAGAGGTCTCAACTTCCCAAGCAACAGACACAGACTAGCAGATTTGATTAAAAGACAAAACACGA

a score=34746
s chr3            31774741 2261 + 160039680 AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGA-CACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCA-----GCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAA--CCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTC-------CAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT-TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCAC---------------------------------TAGAGGGCACAG-GGACA------AAATCCTAA----TTTA-----------CAAAAT-----------------------------------CAGAAATGAAAAGG----------------------------------------------------------------GAGACATAACAA-------------------------------------------------CAGAT-----CCTGAAGAA-------------------------------------------------ATCCAAAACACCATCA----------GATCCTTCTACAAAAGGCTATACTCAACA---------------------------------------------------------------------AAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGG-----ATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTT-CAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGG-AAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggc-tgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccct--------------aaaaat---tctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
s HiC_scaffold_1 225980954 2525 - 233722169 AATGGCAGGAATCACTAAATACCTGTCAGTAATAATgttcaatgtaaatggtcttaactTCCAAATCAAAAGTCATAAACTGGCAGATTGGCACAAAAGATGAAACCCAAATGTATTTTGTCTTCTGGagactttatttacaaaagaaagcatata--aacagaaagtaaaaga-taGAGAACAATATTTCATCCATTTGAAACCATGAAGCAAGCAGAAGTATTGATTCTAATTTTgaataaagtgaatttcaagacaACATTGATCAGATGAGACAaaaaaagatcactacatactcat-aaataaaaaattcaatgaTAGGATGTAACAATTTGAAATGTGTATGCATCAA---TAATGGTACATTTGCTTCATGGAACAAAAAC----TACTAGACATAAAAGGACAGATGGACACCCTCACAAACTTAGTGGGAGACTTCAGGACCCCACTTCCACATATAGATAGGTCAACAAGATAAAACTCCAATAAAAA---ATTCAGATTGAGCTACACCATTGAACAGATGGACTTAGCATATTTCTACAAAGTGGTGCATTCAACAGGagtagaaaacacatttttatcaGAAGCACAGGG-----------AAATTTA----------GGTTATTAaccatgcttaaataaatacaaaaagactgccataatgtctttcatt-tgttGGATCATAATGg-----aactagaaatcaacagcaaaagaaaccaca-aaattaTACAAGCACCTGGAGATTAAATAGTATATTCTTGAATAGTCAGTGGGTCACACAAGGAAGcagggagaaaattaaaaatttcctcaAATC-AATGACAGTGAGAGAATGGCATATCAAAAAATCTATACAGCACAGTAAAG----TTCTAAGAGAAAAGTTTATTACTGTGAATGTCTAATTTTTACattggaaaaatagagaaatttccAATAAGTAACCTAGTGATACATCTCAAGGTCCTGGAAAACAAGAGT---AATTCAAATCCAAAACTTGTAGgcag-aaaaaattacaaagattGGAGAGGAAATCagtgaaattgagactaaaataaTAGTGTCAGTGAATCAC----------AGTTCATTctctgagagaataaacaaat--gatAAATCCTTAGTCAAACTtatgaacagaaggaaaaaattcaGTCCAATTAGAAATGAAAGTCACAGTGGACATTATTGAAACccaaagaattttaagaaactatttcaaaatttatattcctttttaaatttaagattaaaaatacacaggaaagaaaaaaagtagtacAGACAGATAAACAAATTAATTataataacagtataggtttacaaaacaagatgatagaaatttaacaatggttgtaataatgcatattgttaccttcaacaGGATTGCTTACATTAACAGATATAGActtgtaaaattgatctaaacttgagtgttaactgttttaaaatgaaatattgtttATGATCCAAGAgacccttattttttttttaatttttgtatcagagatcaaactcacaacctcatgcttaccaggcaagtgcttgagactgtgaactaaatccccagaccccaaaaTTTAATTCCAATAAACTAGAGAATCTAAAAGAAATGGGTAAATTCTTAAAtgcacatgaattaccaaaactgaaccaagtaGATATAAAATC------CCAAACCAACCAATAGTAGGCAGTGAAATTAAGGCA----GTAATGAAGTCCta-ctaagaaaagcccagaaaCTGATAGATTCACCACTGAATTATACTAGTACTTCAGGAAAGAGCTAACACCAGTGCTTCCTAAAGTCTTCGATAAAATAGAAAGGTATGGAACACTGTCAGGTTCATCCCTTGAAGCTGGCATTACTCTTattctaaaaccagaaaaaga---aaatgaaagaaagaatgaacaagccaatatcattaatatatatagatgcaaaaatattcaT---GATACTTGCAAACAAAATACAAGTAATCACCAAAAGGATCATACATCGTGACAAAGTTACCTTCATTCCAGGGATTCAAGATTGGCTCAATATATGTATATCAAT-AATATAATACACAACATAAGTGAGGT--AAGGATAAAATCGCATA---ATCTCATTAGATGCAGAAata------------atccaacatccattcatgttAAAAAGCCTGATGAAAATAGGTACAGAATA-TCACAC-------TGGTAAAAGTCATTTGTATTAAGCCTATTAtcagtgtcatactaaatggagaaaaattgaa---ACTTTCATTGCAAT----ATCTGGTAAAAGCATGTCCATTATCATGACTCTTGTTCATTATAGTACTCAAAACTTTAAACATAACAGttagacaagagataaaaataaaagtgacatgAATAGGAAAACAAAGGGTCAAACTATtcttatttgcatatgacatgatccTTCACATAAAAGACCCTCTCCCccctaaacaaaaaataaaaacaccaaaagaCTCATAGAGCTAATGAACAAATACAgcaaactgaaaaaatataaaatgaa--caaagaagcCAATAATGATTCTGTACAGTATCAATGAACCAATTGAAAAAGCAGTAAG

a score=37053
s chr3            31774754 2506 + 160039680 AACAATTACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTCCCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATC---------TACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAA-ATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGAT------CAAGTT--------GACCAT------CTAAACACTCCC--------------------------------------------------------------------------------------------------------------------------------------ATATCACCTAAAGAAATAGAA---GTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT---AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcc-cactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaatt---------------------------------------------------------------------ggaaaagaggaag----------------------------------------------------------------------------------------------tcaaaa----------------------------------------------tatcactt-----------------------------------------------------------------------------------------------------------tttgcagatgatatgata--gtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctca-tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaatt
s HiC_scaffold_1 107289698 2711 - 233722169 aataaatatctatcagttataaccatcaatgtgaatggtctcaattcaccaatcaaaagaaacaaattggcaaaatggatcaagaaacaagatccaacaagatgctgcatataagaaacatatttaattcaaaaataaattaatagactgaaagccaaaggatgaaaaacaatactcacTATGACTAGAACCTGGAAAAAAGTATGGTTAGCTAtcttatttgcagacaaagtggatttcaagccaagatttaTCAGAAGAGACAAATAATGTCCCTACGTACTTGTtaagagaacaatcc---aagaggaat-----------aatat--atgcaccaaatattggCACATCCAACTACATAAAAGTAACActaatatatatgaaatgttaGATAAGTAATAATGTAACTGTAATAAGGGACCTCAATACTTCACTGCCACAAAtgaacagatcaactagacaaaaa---aatcaagaaatatcagagctgaaccaaacctttgaacaagtGGGCTTAGTAAATATCAGCTATAACCATTGAGTTTTCTACCCCACatcaacagaatacacattcttctaagcagcACA----------TCCACAACAGATGACCTAATAGCTCA-AGGACATAGTTAAGTAGA-------ATAA-----------------------------------GTCTTAGACTTGT------GAACAAATTATATTCTGGGAG---AACGTT----TGTAAGTTGAA--------TTCATTATTAAGTCT-GTTGAAGTGAGTATTACACAAA----------------------Ttgacacaaata----cacaatgtatATTGATTTCCG------------------------------------------------CTCC-------------------------CTAGGAGC-------CACAGTCCACATCTCCAGTGC-------------TTTTCTCAAAAGTTGTCAA-GACagcaaatgataaagatcagagcagaaatcaagatgatcaagacaaaaaaaattaatcaaaga-----------------ttggttctttgaaagatt----aagtaaaataaactctTGGCCAACTTTACCA------ACACCAATAAAGACTCAAATCTGTGCaattagaaatacaaatggtaa-atcaCAATAGATTCCGCAGAAttccagaagatcatcagtacttACTTTAGGAAACTGCACT--ACGA---TGGAAAacttagaagaaatggacatattcctagacacatataaaTTACCATAGCTGaactaagaagatataaaagttttGTCTaaggccataccaccctgaacgtgcCCCATCTCGTCTGAtcttggaagctaagcagggtcgggcctggttagtacttggatgggagattGCATGGGAATACCGAGTGCtgtaggcttaaaaaaaaaaaaaaaaaagaagatataaaagttttaaatattcaatATCCACCAATGAAATTGaattagtaatttttttaaaactaccaacaaagaataGTCCAGACCTTGacagatttactgctgaattctataagaaatttagaaaaggacTAATGGCACTCTTCATGAAGctttttcatgaaattgaaagggaagcaatactcccaaactcattcctggaagtaagcattagcctgataccaaaaccagaggag--ccAACCAAAAAAAGACAACCACAGCTCaacctctttaatgaacatagattcaaaaatctTCACTATTACCTTGGCAAGTAGAATGCAGgaaattgtcaagaagattacacaccatggtCAAGTAGGATTTAAGCAAGGGAAGTAGGGATGGTTTAGCATACACAGATCACTAAATGTATTATACCACATTAACATAATTAAGCACAAAAACCACATGACTAtttcaatggatgcagaaaaagcatttgtcaAGGCCTAACacacattcatgatttaaaacccctaaagaaaatagcaattt--------tatctcaatctcataaaagtcatttataataaaccaatagccaacatcatgctaaatg--gtcaAACTGAAAGTTTTTCACTCTAAACTCAGGAGCAAGA-AAGAACACCCTCT---------CATATTCaatatagatctagaaaaatttGCCAGACTAGttagacaacagaaaaaaacaaaaggaatatgAACTGGCACACAGACTGAGGAAACTAGGAAGGAAGCTATGCCTCTGCCTGTAAGTCAGCCTGCATGCTGATTGGGGAGAGAAGAAGAACACCCCAACCCCTGTAaacaaccagctgattcagaggaactgcattatttgattgactttgcaaacctaaaaccagtagtctgagtgagtatttaaaagataaaaatatgcaatgtagTAACTATtatagatttcctactgtcttatcactttactgctttgttttatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcaaaaagaatatggataggaaagaaagaagttaaattattatttgctgatAACATAATCCTCTACATATAGGAGA------------tgccaaaagactcctagaattaataatcaaattccatATCATAccaagatacaaagtcaactctcaaaaatctatagcattcctgtacataaatatcaaactcactaagagaaaaattagggaaatgacgtctttcacagtagcattaaaaaaaaagaaatatgtaggAATTCACCAAactaaggaaatgaaagacctttaaatggaaaactatagtactct---aaaaaagataaaaaaagacattaaaaaat-gaaacatatccTCTGTTCCTTGAataagcagaaccaatatagtgaaaataaccatattcccaaaattgttatacagatttaatgcaatcccaatcaaaatatcaacagcatacctcacagaatt

a score=16050
s chr3           31774781 1077 + 160039680 AATATCAATGGTCTCAACTCCCCAATAAAAA--------GACATAGGCTAACAGACTGGCTACACAAACAGGACA--CAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACT-ACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTC----CAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGG-GAGACTTCAACACACCACTTTCATCAATGGACAGATC-GTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTA-AGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGC--AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT------TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG
s HiC_scaffold_1 29924583 1013 - 233722169 AATATCTGTGATC---ACTTTACATTAAAAACTTGTGATGTCAGAGGC----AGAATGGATTCAAAAGTATGAAATTCAACTATATTTTACCTATTGGAGACATACCTCATCCAAAATAAGAAGGATGGAAATGAAAATTagaggatgaaaaacagtattt---gaCTAGAGCCCGAA--AACAAGCAG--------ACCTCAA-----GACACAGatgacttcaagccaaaactgatcagaagagacaaaaacgAGCACTTCAGATT--GtgaagaaacaattcaacaggaagagatagcA--TTAGAATGCTTATGATTGTTGCACAT-------Cagctttataaaacaaaaactc------agatTTAAAAGGACAGATAGC-CACAACACAGTCATAGTAGTGGAACCTTGGTGCCCATCTTTTTCAATTAGATAGGTCAGCCAGACCAAAAAATCAACCAAGAAACATCAGAGTTAAAccacacctttgaacaaatggacttaata---ctCTAT-GCACGTTTCATCCAACAATAAtagaacacacatttttctcagcagaacatgaaactttttccaaaatagagcATATCTTAGGCCATAaagcatgtttaaataaatgtagaagAACTAAAACAATCCCTTGCATACTATCAG----TTAAGAAGTAGAAAGtagaaatcaacagcagaaaaagcCACAGAAACTATACAAACACCTGGAgattaaatattacattattgaataatcagtggatcatagaagaaattaggaaagtaat-aaaaaattcgTAGAATCAAATGACAGTGGACAGAAAACATACCAAAACTCATGGGACACAATGAAGGCAGTTCTAAGAGAGAAGTTTATAGCTGTAAAAGCATATGTTAAAAAAAgagtgattctaaatac------cctaatGATAC-------AGCTCAAGAACAATGAAAAGCTgaaactaacagaaaaaaattaga---------------aagagcagagaaaacatcaatgaaattgagactaaaagtAATATAGATGCTCagtgaatca----------gagttggttctttgaaaggctGGAAAAG

a score=39297
s chr3           31774801 3627 + 160039680 CCCAATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGC--TCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAAT--GGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTT---------ATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGA----TACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGC----CTCCAAGAAGAAACGG--------GAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAA--AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTT-TGAGAAAATCAACAAGATAGA-TAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCT--TCTACAAAAGGCTAT----------------ACTCAACAAAACTGGAAAACCTGG------------------------------------------------------------ACAAA-----------------ATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTAT-----TCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT----AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCT-------AAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag-----------------------------------------------------------------------------------tcacaaataat-----ataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaa--gatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctagg--atagcaaaaactcttct----caaggataaaagaa----cctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccag-----tggaagaaagacagcatt-ttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgca------------aggcaaaag--------------------------------acaccg----------------------------------------tcaataagacaaaa-------agaccaccaacaaatt--------------------gggaaaggatca-------------------------ttacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggt---ggacttcagaaaagcaaataaccccattaaaaaatggggct-cagaactgaac---aaagaattctcacctgaggaata------ccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattcc-acctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctct---cctgggcatatatc-cagaagatgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacaga----ggaatggatacagaaaatgtggtacatctacacaatggag
s HiC_scaffold_1 83822754 3676 - 233722169 CCAACCAAAACCAcatagac------actgtct-caaaataaaactacaaccatcTACTGCCTACAGGAGACACACCTCATCTGAAAGGAAGCTCACAGCCTGAAAGTGAAGG--TAGGAAATGAAGCTCCATGCAGCAGAGCC-CAGAAGCAAGCAGGAATGGCTGTCTCACCTTCAGGCACAGCCGACCTCAAGCCAAAACTGGTCAGAAGATACAAAGATGGTCACTGCACAGTGGTGAAGGGGGTGACTCAACAGGAGGAAGTGAGACTCGTGAATATCTACGCATTGCAAATG------------------------------------GGCGCACAGGATGAGTGG-ACACCAGGCAGCCATGG-GGTGGACCGCAACACCCCACTCTCA-CAGTGAGGCCAG---GTGGA---------CAAACAG---CACAGCAA---TGTCAGAGTTTCTCCACACCATGGAATAAATGGGCCTAACGGATCCCTACAGAGTGCTTCACCCAATAGCAAAa------acattattctcagcagcacatgggacttttTCC-AACTAAACCACAC-TCAGACCCTAAAGCACGCTTAAACGACTTCAAAAGGACTGAGA--ACTCACTGCAAAGGCTCAGATCATAGCAGGATGGAGCTGGACACCAAGAGCAGAAGAACCCACAGAAATC--ACAAAAACACGGAAATTAAACAGTA----TATCAACGAGGAGTGAACAGGTCACAGAAAAACTCAGGGAAGAAAAACACCAGGTCCTAGAA-TCAAAGAAACGGAAGCC-CAAC--ACGCTGGCCCG-GGGACACCAGGGAAGTGGTGCTGAGC-AGAAGCTCACAGCTGCGAACGCTCAGCTACAAGCAGAGCAGGCGCCAGGTGAGGGAGC--------------CGGTGACGCTTCAGGAGGTCCCGGGAGACGAGAGAGAGCAAGGCAGCCGCCGGTTAGCAGCAGGCGGGGAAGCACAGAGGGCAGGCCCGAAATGA------TGAGAAC-----GGACTAAACACGGAGGC-----ACCGAGGCAGCGCTGCTTGTGGAAGAATAAACACGATCCATTGAATCCTTAACCAG-CTTCCTAAAATGAGAAAGGAGAAA--TCTGCATGGAGGAATTGAGAATGAAAAGGGC-ACATCACAACA-ACACTGCGGAAGTGGACAGGACTGTGGGAAGCTGCTCTGCAAACGTTTCTTCCAATAGCTTGGGGAACCCGGGGGAAAcagagggcctgggatttagctcagtggcttagggCCTCTCTGCAACGTCAGGTCCTGAGTTCGgtttctggtacaaaaagaaagaaagaaagagagggagaaattCCTACACACATGTGAATTACtaaaattgaatcaagaagatataaaaactctgACTAGACCAATAAC-----AGGTAATGGAAgtg---ataaaaaccctaccaacaaagaaaagcccaggacctgatggTCT--GTCAAGAATTCTACCAGAACTCCAG---------GATTCGAACTCTGC---AGCTAGACCGAGAGGCAGGAGTG---------CTGCCCAAGTCAGGCCTGGGGATCG--GCTACCCTGATCCCAAAACCG-AGCCGGACTTAACCGAAAAACAGAACCTCAGGCCAATGCCGCC-----ACATAGACACAGAACTCCTCACC------------------ACCCAAAAGC------------TCAGGCATCGCGACCGAGTGGGCTTCACCTTCACCCGGGGCTGCAGGGATGGTTTGAT-----------CAGCACACGGAGCCATCACTTCAACAGAACCAAGAGCAAAACCCACATGATCGTCTCAATGGATTCAGAGAAAGC-CTTGGCAACATTCAGCCCCCACTCATCATCCTAAAAATCCCAACcaaaacaggcagagaaagaccTTACCTCAAACTCAGAAATGAAGGAAGTCATTTGTGACAAACCTGCTGCCACTGTCACACTAAATGGTGA-AAACCAGAAGCTTCTCCTCTAAAACAAGGAACAAGACCAGCATGTGGGTTATCACCACGACTGTCCAGTATGGTGCTTAAAACCTCAGCCAGAGCAAttgggcaagagaaagaaataaaagaggtatttacagggaaggaaaaagtc-aaatatcCTTATTCATAGGGGACCCAATCCTTcaaagaa--gaccccaa--------------aactcctaGAACCATTAAACTAATTCAGAAAAGCAGCAGGACATAAAATAagctcataaaaattaaaagtatt--ccTGTACAACAATGAACCCAcccaagaaagaaatcaagaaaacaatcccaTTCACAACAGCATTTTAAAACCTGGATGGgagtggtggtgtacacctgtcatcccagcactccggaggctgaggcgggaagattgtAGTGAGTTCGAGAACAACCTGGgctgaaatatgtaggaattaacctaaccaagg-agtGAAGGAactttataatgaaaactatactgctctgaaaaaggaggttgaagaaaACATTGGAAAATGGAAAGCGATCCCCTATTCCCAGGGA--GGCAGAACTAACATCATCAAAACGGCCATACTACCCCAAATAAGGAGCAGATGGAGTGCAATCCCCATCCAAATATCATTGCCTgttctcacagaactagaaa----aattcTACAATTTATACGGA--AACAGAAAAGCTGGGGAGTAGCTGGGGCAGTCTTggacagaagagaaaagaagaggcgTCTGAT------------CCCAGACTAAATC-CTACTACACGGC-----TGGCAGGTGGAGCTCGGTACCG---TACGCAC---CAGGCAGGCTCGCTGCATGG------------------GCACCTCC---------GCCGCCGGCTGCTGGAGAAGGG--------CCAATAAGGGGCCTGGAGGCAGGGCGGCCCCAGCCAGCACTC--TGCTCACACA------------CACACCGACGAACGGGG-------CAGACCTGTGCTCTCACCCTGGGCTGAAA--GAAGTGGGTGAA-ACACTCGacaataaaacagaaaccctGAATCTTCTGGAAAACACAGTAGGAAGCAGTCTTGAAGACGTAGGTGTAGgtgaggactttctgaacagga-gccaatggcacaagaaataacactaagaatcaacaagtgggagcatatcaaattaaaaagcttcagcattcgggaggctgaggcaggaggatcattgcaaatttcaAGACcgggctgggctacacagtgagctcaagccagcctgaactacacagcaagaccttgtctcagacagacaaaaaatgaataaataaacaaaaatttaaaaagcttctgcaccaCAAGAGAAACAATCAACAGAACAAAGAGAATGGGGGAAATTTTCCCAGCTTTCCTCAGACAGGg--ctcatatctagaatatataaagaactcgtCAAGATTAGGGCCCCTCCCAAAGTAATAGACTTAATCAAAAAAAAGAGCCACTGAAATGAGTCTGATAGGAGCCGCTC----GGAATAAGGTGCCCCTGTGGCCAACGCGCACATGGGAAAGTGCCC-CCATTTTTGGCTTTTAGAGGAATGCAGATCAGAATATCACTGAGATTCCGGCTTCGTCCGAG---GAACGGCTAGCAGCAGGAAATCAAGTACTACCACGTGCTGGC-CAGCTAC---------GGGACCCTTCTGCGCTGTGGGTGGA--TGAGAACTAGTG-AACCTCGCAGG-TGTCAGCGTGCAGATACCTCGGGCA--CGGAGACGCCAGTCCC--AGCTCCCACCCACACTTCTGTCCCTGCCAGTGCATCGGAGGTGGTGCCTCAC--------AGGGAC-CACGCAC--CCGCGCCTGCAGCAGCACAGCGCACAGTAACAAAGTCTAGGAAGCTGCCCACGTGTCAATCGGCAGACGAGGGAGTGGACACAGGAAACA-GGGACAGC-ACACAGCAGAG

a score=12933
s chr3            31774804 1131 + 160039680 AATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACC------CATCTCAGG-----GAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATC------TACGCTCCAAATGCAAGGGCAGCCACAT-------TCATTAAAGACACCTTAGTAAAG-------------------------------------------CTCAAAGCACACGTTGCACCTCACA-----------------CAATAATAGTGGGAGACTTCAACACACCAC-TTTCATCAATGGACAGATCGTGGAAA-------CAGA-------------AACTA-AACAGGGACA-------------CAGTGAA---ACTA-ACAGAAGTTATGA--AACAAATG---GACCTGACAGATATCTACAGAACA-----------------TTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAAT-GAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATT-CACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC---ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTT--ACAAAATCAGAAATGAAAAGGG
s HiC_scaffold_1 166393978 1246 - 233722169 aaaaagaagaaacagattggcagattAGTT-CAAAAACAAAGCTCAATGGGATGCTATAtctaaaaaaacatttaattttttaaaaacttgaaagaataaaaaatcatc--------aaaggatggaaaacaatgttccatgcaataggaacctaAAAATAAA--TGAGTTGCTGTCCAATTTTCAGA-AAAGTgcacttcaagccaaaactgatcaaaagagacataGAAAGTTATCATGTATCGATTAAAGA-ATAATTCTACAGGAAAAGATAATGATTAAAGATAAtgtaaaattctttcaaaactgacagagaaatatGTCTTTCCATGACGAAGAgcaccttaagaaattcatgaccaccaaaccagtacTCACGAAATTTTCAGGGATATCCTAAAAAGAGACAACAAATCTGACAGTGCCAAAAAGGTCTAGTAAAAATAGTGG----------CACATCAAACTTCATAAACAAACACTACGGGGAAAAAACTATCAGATAAACATTGTCACAACTACAGTAGGGACATCAATACTGTCACCAGTAAATCAACtacataaaaacaacaacaaagaaatgtAAGAGTTGAATAACACCTGAAAATCAGTGAACTTAATAAAGTTTTTCACCC---AACCACAGCATAAATattctttatagcagcacacagaattttctacaaaataaatcacata-ctAGCCCTGAAATATGgttaaataatagtaaaaagaattgaaattatcacatgcatattatcagaccatagttcaataaaactagaaattgatgagaaaaaaacctctaaaaaattattaaaacaaaaggaaattgaaTGATATACTCTTGTATAATCAATGGATCAGAggtgaaattaaggaagaaataggaTAGTTCTTAGAATCAAATTAGTATGCACATGTAATATGACAAAACCTATAGCACACAATGACATCAAGCCAAAGAAGAAAGTTGATAGCTGTGAATGCCTACATCAGGAAA---AACAGAATGACTACAAATAACCTAATACTGTACCTCCATGTCCTGGTAAAACCAGA---ACATTCTAAATCCAAAGTTCTCACAtgaaagaaaattgtaaagattagagaagaaattaatgaaatttag--agtaaaaacaatataaagaatcaatgaccCAAAGAgcaaattctttgaaagaataaagtaaaatagacaaacctctagccaattttacca---agaaaaggaaagaaatactcatatcaatgcaattagaaatgataaagg

a score=9930
s chr3           31774804 779 + 160039680 AATAAAAAGACATAGGCTAACAGACTGGCTACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG--TCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACAC---ACCACTTTCATCAATGGACAGATCGTGGAAAC---------AGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT-TTTTAGAGTTTAATGAAAATGAAG
s HiC_scaffold_1 66390202 716 - 233722169 aaaaaaaagaca---gacaacagAGTGGATTAAAAAACAAGACTCAACTCTTT------TGCAAGAAATGTACCTCACTAGCAAAGAC----------TAAAAACGAATGGGCAAAGAACAATATTACATGCAAATGAAACCTGACTG--CAATCAGGAGTA-CTAAACTCATATCTGACAAAGGAAGCTTCAAAACAACATTAGTCAGATAAG-CAA------ACACTATATACTGATAAATGGAACAGtcc--------------------ataaatatatgtgcaccaaacatTACTGCCCttgatttcataaaacaaatactactcAACAGAAAGAGACATAAAGGTCCCAATACTGTAATAGTGGTTGAGTTCAATATTAAGATGATCCTACCAATAGATAAGCCATCCagaccacccccccaaaaaatcaacaaagatacCTCAGAATTAAAGTACACCATAGACCAAACGGACTTAACAGGCGTATATGGAACATTCCATCTGACAATTGTGGAATACTTATTCTGCTCAGAAGTTCATGGACTGTTCTCCAAAATAGGTAATAGCTTAGATGATAAAGCAAGCCTCAGCAAATACAAACAGGAAAGAATT-TCTTATACAT--TATCAGcttataatggaatgaaactagaaatccaGGGCAA-AGAAATCATAGAAA--CTACAT--------AAAcagaataa--------tcagtg-------ggtcactgaAGAAATGAGGTAGAGGCTAAAAGAATAATTCacaaggtaaaaaaaataaag

a score=51504
s chr3            31774834 2174 + 160039680 ACACAAACAGGACACAACATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCA------AGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACT-TCAACACACCACTTTCATCAA-TGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAA---CTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG----AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGC-----ACAGGGACAAAATCCTA-ATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTA----ATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTC-----TACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaa-aatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaac
s HiC_scaffold_1 105839773 2141 - 233722169 acagaaacaagatccaacaatatgctgcatacaagaaatacgTTTAACTTGGAAAGATATTCATACATTAAAAGTCAAATGgtggaaaacaatgctccatgggACAGcaa----cctg--gaaaaaagcagggccagctattctatttgcagtcCAAGTGGA-TTCAAGTCAAAACTGGTCAAGCCA--CAAAGAAGGTCACCCTGTACTTggaaagggaacaatccaagaggaagagataacaatcataaatatgtatgcccCCAGGTCCAGAACAccca-atatataaaacaaatattaatggacatgaaaaatcaaatgagcactaACACAGTTGCAATGGGGGAATCTCAGTACCCTGCTGCCACAAAATgggcagatc-----------aactagacaacaaatcagaaaaagaacTGAGTCAAACTTTTGAACACACGGACTTAGTAGTTGTCTACAGAGTGTTCGGCCccaccacatcagaatacacattcttctccaaCCTTCAAGTCATGTTTTCCAAAATAACCCATATACTAGCTCATACAGCATGtttcagtaaatgcaaaggaactgaaatcatcccatgcatattaGCAGACCCTAATGCAATTGAATTGGAAATCTATGGCAAAAGACACCAGAAAAAGTCC-TATGAATatggaaatcaaataaaatccttctgaacaaccaatggatcacagataaaattaaagaacaaattagaaaGTTTCTACAACTAAACAATAATTCCAATACAAAATACCA------------------GAAAGCAGTCCAATGAGGGAAATTTAgagcagtgaattcccatataACAAATGCAGAGTGAACTCCAATCAACACCTTAATGTTGaccctcaagcttctagaaagagaaga-gcaagtcaagcccaaagtttgTACTAGAGGGGAAGGGATAA---AGAGcacagtagaaattaatgcagtggagactaagaaaaccatacagagaatgaatgaattaaagagGTAGTTCttgga-agatgaaataaaactgACAACCTCTTAGCCAAcattataaaaagttttaaaaaggaaacaaagtcttagatccatgcaattaggaatggaaAGGGTGAAAGCACAACAGATTctgcagaaattcaga---tcataaatgcctgctttgagaacctgtattctaacaagatggcAAACACAGAagtaatggacagattcctacagTCATATGAATTGCCACAGaggaatcaagaagatgtaaaaattctaaatgacccaatgtcagtcaatgaaattgaagatatgaTTGAAAATCCACCaataaagaaaagtccaggtcctgaccAATTCCCTGCTGAAGTCTACAGGAAGCTCAGAGAAGACCTACCTAATGCTGCCACTCCTCAAACTCT-------AGTGAAGTTGAAAGGTAATCAGTACTCCCTaagtcatccctggaagcaagcattac-ctgataccaaaactggagaaggagCCAATCAAAAACAGAGAACTGGAAGCCAGTCTACCTAATGAGCATATACACAAAAATCTTCAATCagatactgtcaaacagaatgcagcaaatcatcgcaAAGATCACACACCATGACcaggtaggattcatcccagggatgcagggagggCTCAagacatgcaaatcaataaatgtcattcACCACATTAATAGAATCAAGGATAAAAACCACTTGATCGCCTCAATAAGCCCAGAAAAGTAGTCAGACAAACGCCAACACCCATTCAAGAGAAAAACTTTACAGAATACCCAACTAGATTGTCTTTAACCCAACCtgaaaaaagccatctatgacaaaccaacaggtgacatcatgctaaatggtcaAAGCCTGAAAGCTTCCACTCTAACAATCACCAATAGGACCAGGAGGTCCACTATCACTTCTCCAactcaatatagttttggaaacattagccaatgCAATtagatgggaaaa-aagaaaaagaaaa---------aagaaaaagaagttaaattatcactatttgcaggtgaTATGACACTCTATTCAGAAGATTCCAAAACTGCCACTAAAAGACatctagaattaataatcaatttTAGTAGCATAGCTGGGTATGATgtcaacactcaaatatcaatagcatgcCTGTACAAAAGtaacaaactcagtgagagagaaattaaggaaac

a score=65408
s chr3            31774844 3653 + 160039680 GACACAACATTCTGCTGCTTACAGGA---AACCCATCTCAGGGAAAAAG------ACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAA----GAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAA-TCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACA--CCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAG---AAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTT-CTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTT--ATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaa-aattctaccagagaactcctaaacctgataaac-agcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaag-gagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaa-----agctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaac---ccacacacgtatggtcact--------tgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctcctt-----gtactaaggtcaaatctaagtggatc---aaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaaga---------caccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacc-----tatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacac-ctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacaca-------------tgctcca-------ctatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatg----------gatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatc
s HiC_scaffold_1 148278256 3532 - 233722169 GACACAGAGATTAGTAGTTTATAGAACAAAACACATTTAAACCAAAAAAGAATTCATAGGCTATAGATCAGAGTGaag--------aacaatattccatgcaa----tctAAGCCCCAAAGCAAGCatgtataattattatattttcagaaaaaaatagactttaaatcAAAACTGAttagaaa-gtcaaagaatggtACTACATAGTGATCAAGTGAAAAATTCAACAGGAA-AATACAAGACTATAAGGATATATGCACCAAACCATGGCACACCTGACTTCAT-AAAGACAAACACTAGTGGACATAAAATGTCACATAAGATC-AATGTGAATTTAGCGGAAAAGCTCAATACTCCACTGTTAGAAATAGACAGGTCAACTAgataaaatatcaacaaagaaatttcaGATTGAATAAAACCT-TCAGACCCAGAGACCTAGTAGGTATTTAGAGTACCACATAAC----AAtaatagaatatatattctt---agTAACGCATGTaactttctcaaaaatagaccacatGCTAACCCATTAAGCATCcttaagtaaaaacaaaa-----gaagttttgACATACATGTTGTCAAATCATAGTGCAATGAGACCACAAATCAGTGGTAAAAGAAACTACAGACATTATGCATACACAT----ATTAAACAAAACCCTGTTGAATAAGCAGTGGATCACAGACAAGATTAAAGATGAAACTAA----TTCCTACAATGAAATAATAATGCCAGCACAATATGCTGTAACATGAGGGTCACACAGAAAGCAGTCCTTAGATGGAAGTTCATTGCTGTGAATGTTCATATTCAGAAAAGAGAATGAGCCCACATTAAAAACCTGCCCATAGACATTAATATCCTGgtaaaagaaaaccaatcaaatt----caaatccagtagaagaaagg-aataattaa---------tgaaat--------tgggaattaaaagacat-----aaaaatcaattAAGCAAAGAACTCATACTTAGAGTGAATAAACAAAAGAGGAAAGCTCTTAGGTAATCTTACCAGAAAACac-----------tcaaatcaatgcaattagaagaGAAATTGAA---ATCACAACAAATCCTGCTGAAACCCAGATTATT----GATGATTACTATGAAAATGTGTACTCTAATAAATGGGAGAATCCAGAATGAATGAACAGacttctagatacatatgaattgtcTGAATTGAATAAATGAGATATAAAAC-TATACACAATCCAATAT-AGGTAATGAAATTAAAGCAGTAGTTAAGAatttaccaactaagaaaagcccagaaccAGAGGTATTCCCCACTGAATTCTA-CAGAACTTCAGAGAATATCTAATAACAATACTCCTCAATCTCTTTAAGAAAGTTGAAATGAAAGGAGTACTCCAAAATTCCTTCCTGGAAGCTAgaattactctgattccaaaactg-aTAAGAActcaactaaaa-aatgaaatatagtcCAACCCCTTTTTAATGAACTCAGATTAAAATACC-------AGattctggcaaacagaatgtaacaaGCCTTCAACACGATCATAGATGATGACCAAGTatgattcatctcagggatgtaAGGGTGACttgacattcaaaaatcaataaatgatatactttatataaataaagataaGCACAAAAAT----GTATCATGTTACTAGatacagaaaatgcttttgacaaAATGCACCTTCTGTTCATAATAAAAGTTcatgaagaaaataagt---------ataCATCAACCTGATGAAAGTTATTTATCATAAACTTATGGATAAGATCACATTAAATGAGGAATAATTGAAATTCTTCCCTTTAATATGATggacaagacaagaatgtctagtatcatcactcctgttcaatatagcaCTTGAAACATTAACCAGAAAACTTaggtaagagaaataaataaaaataatacgtataggaaaggaagaagtcaaatgatCACTATTTGTAAGTGATGTGATCTTCTATGTAGGAGGCCTAAAATTATTTCACCAAAAGAGTCCAAGTATTAATAGCCAAAATTCAGTAATGCATAAAGATACATAATCAACACACAAAAGTCCGTAGTGTTCCTGTACAGAAAGAAc-----gactgaaaaagaaattaagaaaacaacaccattcacaataacatcaagaataattaaataattagtaACTAACCTTAGCAAAGAAGC-AAAGACTCCTATAGTGTGAAGTACAgtagtctgaaaaagaaaatcaaagaggacatcaatAGA--GAAA----TTCAAT--TTCTGGATGTatagaaccaatattgtcaaaatacct------tccaaagtaaaacacataatTAATTC-ACACTATTCAAAATATCAAAACCATTTCTCATAGAACTAGAAATAAATAATgccaaaattcatatgaaaacagaagaatcccaggaaaacaaaagaaattcttgGAAACAAGAGTAAAGAAGGAAGAG--AGCATGTCAATCTCAGATTTCAGTTATATTATAAATCTATAATGACAAAAGTATCATGATCTTTGCACCGAAACAGGCATCTAGATCAATGCAACAGAACAGAAGAGGTAGAAACAACTCTGCCTCTCCCGTAAGGACATTCACCCAACTTGTCTATGGCACAGGAGCCAAAAACATAC--CTGGAGAATAATAAGATGTCTTGCAAATGCTGCTTGGAAATCTGGTGCAGTTTCTCCAGAAGACTG------AATACAGACCTGTCTCACTCACAagtaacaaattaaaataaaaatgaatcaaaaaggaATTAAACATCGA--CACAACcactgtaa---------gaaaaaatagataaaacttttGAAGATCTAGATGTAGGCAACAACATTTTG--TAAAACCCTCACTGAATAAGAGATAatatcaataa-taaaaaattaggtcatataaaattaaaaatcttgagcacagcaaaaaaaaaaaaaataaccaacagtgaagagaaaaatc-----acagaatgagaaaaaagtttTACTAACTACATCTtaagtaaaa---------aatgtttaaaatgtataaataactcACAAAATTAGATCctaaattaaagaggaa----atcagaaagtGAGCAACTGAaaagaatagacacttctcatc-----agta-caaatggccaataaacatatttttaaaatgttcagtatctGTCACCAATAGAGTAATACGAGTTAAAATGAAACTGAGATTCTATTTTACTTTAGAAAACATGGC-ATCATTAAGAAACTAcataatagcaaatgctggagaggttgctGGGGTAAAGAAATCCT-CTATATTGTTGGTAACAATGTCAATgaatacaaccactatggaaacta---tggagattcctcaaaa--------ctaaaACTGC------------TAATTCCACTTCCCAGCTTTTGT------GTCTTCCTGA-----AAGACTGACAGACATCTTATTACTGTGCTCCACGCAGACCCTagtctatagcagcacaactcataatggccaaaatttaaaaatagcctaTAGgtctattaaaata--aatgtatatttctaaataaaagaaatgt-atatttgtacataatggagcactactctcCTATAAAGAAGGTTACATTTGAATTGTTTGTAGGAACATAGATGCATCTTGGGaacatc

a score=49416
s chr3            31774886 3318 + 160039680 AAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGG---TCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCA----TCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACT-TTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATT----CACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCC-------TCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATC-TAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAAT--AATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACA-AAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAAT-TTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAA----------------------------------------------ACCAC------------------ATGATC----------------------------------------------------------------------------------------------------------ATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTC-ATGATAAAGGTTTTGGAAAGA-TAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaa-ataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacc-cttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaa--cttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattg-taaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacc---tctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatgg---tactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacagggga-aaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatg----aaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatgg--ggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctc-cattgttggtgggattgcaggcttgtacaaccactctgga
s HiC_scaffold_1 202321554 3159 - 233722169 aaagacatACA--GACTGAAATGGAAAGTAttggaaattatatttcaaaCAAATGGAAATCTAAAGCA-------GAAGTATACCT----ATATCTTATGAAGCAGACTTTAAGACAAAAACTATTAA----GACAAAG---------TCATATATAAAGATCAAGGGATCAGTTCAACAGGTAGA-TAGATGATTGTAAATCTAGATGCATCTTATGTTGGAG-AACCTAATTTAT-AAGCAAACACTGCTAGatctaaagggaaaaatagattcTAATATAATAATAGCAGAGGACTTCAACATCCTACTCTTGATCAGTGGGCAGATCATTCTGACAAAAA--GGGcaataaaacagttaaaaaaattt---ttatagattaaaTGAATTTAACAGATACTTGCAGAACATTTCATCCAACAGCTGAACAATATACGTTCTTTTCATCAGTGCACTGAACTTTCTCTAGA--TAGACAT---ACTGTCCATAAAACAGGgcttgacaaa-ataaaaaaattgaaataatatccTGTATCTTTTCTAATCACAATGG---AAG--------TCAATAACCAAAGAA------GATTGTACAAATTATGATACATGAACACTGAATAAATTTTGAACAAACAATA-------CAACAATGAAatcaaatgtgaaatttaaaaatatgtcaa----aatgaagatgaaaacaCAATATGCCCAAACTTATGgaatacaataaaaacaatactagTAGGGAAGTGTTTGGCAGTAAGtgcctatattttttaaaaataaat-------------ttcaaatgaacCAGTAATGTATCTCAAGGATTTTGAAGGCAAGAAg--aaagtca---aaagagaaaaaaagaaagactagaacaaaaataaatagggactttaa--------aagtataaattactAATGAAACAGTTG--------------TGGTTTGTTTGAAATATAAACA------ACCAACTTTTAACTGAACTAATCGGAAAA-AAAGAGGTAAgatccaaataaataaaaccacagtTGAAAAGGGAGAGATTAAGACAAATcctacagaaatacaaagaattactAGGGATTTTTATTGAA----------AACCAAATTGGAAAAgctaatagaaatagaaaattttctggACATGTGAAACCTACCAAAAATGAAAGATGAGGACGTACAAAATCTTGAACCAGCCAATAACAAGTAATGAAATGGAATCAGTAACAAAGTAAGACTTATAGC----AAAAACTCAGACCTAAATGGCTTCACTAATGAATTTTACCAAACTTTTAAAGAA---CTAATGCCAGTTCCCCTCAAAAATTTCCAGACACACTAAAATGGAGGGAACCCTTccaaactcattcttggaggccaAGATTACCCTGtta--------aaaaacagagcaaacaaag--agaaaactgtACTCCAGTATTGCCTGGtaaacacagaggcaaaaattctCCAAATA-------CCAATCAAATTTCATAGCACATTAAAAATACCATTCACCATGATCAAGTTtgtttcatcccaggaatgcaagaatggcTTAATGTATAGAAATCAGTAATCATAATACATGGCATCAACAGAATGAGTGGTAAAAGATCATGATAccttagccaggcgtggtggctcatgcctgtaatcccaccactcaggaggctgaggtgggaggatcgttatGAGttagagaccaacctgggctacaaggtgagctcaaggccagtctgaactgcatagcgagaccccatctcaaaaaagaaaaaatttttaaaaattatggtacCTCTATTGACACAGAGAAAACACCTGATGAACTTCAACATTCCCTCAATGATAAAAGCTCCAAACAAATTGGGCATACAGGGACTGTACTTCAGCATACTAAAGAACATGTGTGACTCAC----AGACAACATCATACTGAGTGGGAGAAAGCTGGAAGCATTTCCTCTAAGatcaagacaaagacaaaa-tatcTAAGCTCACtgttcttattcaatatagtactagcacttttagccagagcaattatgtgaaggaaagaaataaaagacataaatatt--atgGGAGGAAG------TACAACAGTTTGTAGATGATTC-----TACATATAGAAAAACCTATAG-----ACCAACAGCCTATTAGAGCTGATA-----------TTTAGTACCAAGACACAAatatcaacatataaaaatcattag------tttatac--agattaaattttctg----agaaatcagGAAAGCAATTCTACATTAAAATagctataaaagaataaaaatacttagaaa------taagcAGGGAAGTTTAATCCCtctataattaaaagtttttaaaatactgatgaaata--------aaaacacaaaaagatggAAGGACCTTCCAAGTTTAtgaccagaaaaaa--aatgttgttttaaatGTCCATATTACCCAATATGATCtatacatttaatgcaatcccagtcaaaatgcTAATGAAATGcttcatagaactagaaaaaac--------aattcatgtGGAAGCTCAAAATACCCAGAATACAAAAATCT----TGAAGTGCAAAAGGGACAAAGCTGGAGGTAtcacaataccagatttcaaaaCATACAACAGAGCCATGGTGAC-CAAACCAAACGGTTTTaatggcataaaaacagacatataaa-CAATGGAAGAGGATAGAGAACTCTGCAATCAAACCACACAACTACAATCAACTGATTCTTGACCAACACACTAAAAATTTACTGGGAACAAAAGACAGCAAT--------------------------------------------------------------------------TACTAAAAGAAAACCTAG------------------------------------GAAACATTTGAAGGAAACA------------CTTTAAGATGTTGGTACAAGCAATAAAGTTCTGGGACAGGACC-CAACAGCACAGGAAGTGAAATCAAACATTTACCTTT-----CTCattacacaaatttaaaaacttctgaaTAGCAAAGGAAACGAACA--GAATCAAAAaaataacctacagaatgggaggaAACAGTTGCCAATTGTTCACCTCA----Gggttaatattcaga--atataatGAACTTAAAAA-----CTTTTTGACAGTCAAGCAGCCCAGTTAAAAACAGGCAAGTT---GTTTGAATAgatatttcacaaaagaaaaata-caagtggccaacaagtatatgaaaaaatgctaaaTATAATTAACCATCAGAGAAATGTAAACCAAATATAC---AAGATACTGTCTTACCCCAGttagaatgactattatcaaaaa-taaaaaaatagtgacTCTtgatgaggatgtggagaaaaatgaATTCTTGGCACATTGCTGATGTGAATGTATATTAGTACAATTATCATGGA

a score=27993
s chr3            31774886 1604 + 160039680 AAAGACAAACACTACCTCAGAGTGAAAGGCTGGAAAACAA-----TTTTCCAAGCAAATGG---TCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTA------AAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGG----TCACAAAA----CAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATA-----AATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAG-ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG---AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACAT--AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGA-AGTACTTATTAA---TAATCTCCCA----GCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTA--TGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAAT
s HiC_scaffold_1 181954342 1544 - 233722169 AAAGACACATGTAGATGGAAGGTAAAgggctggaaaaagaaaagatacactaCACAAGTGGAAACTAAAAGCCAGCAGCAGGAAGAGCTAACCTCATAGCAGGTAAGGCAGACTTcaagt--aaaacatttaaatgagACA--GAGGGTTACCGTAGACTGATAACATTATCAATGCACCAAGAAGATAGAACAATTTT----ATATATGTGCCAACCACAGGGCCACCCAAATATGTAAGCAAATATGAGAtctaaaaagagacagagagac--------cccAAAACAGTAATTGTTGAGGACTCCAGTGC-CCACTTCCTGTAATGAACAGAtcatccagacagaaaatcaacaaagaaacatctGTGTTGAATCACACTGTAGAATAAATGGACCTAACAGACATCTGCAGAACATTTTATCCAACAGCAGCAGAGTATACATTCTCATCAGCACGT---GGAACATTCTAAAAGATAGATCATA-AATAGAACTTTAATAAAAACACCAAGTCTCAATAAACGTGAAAAAACTGAAGTGCTATCATGTAACTTGTTAGATCA-CATGG---------------AAACAACTACAAATTCCTAGTAATTGAAAGTACGAATAcgtatggaaattgaataaca-tgtTCTATATGACCTATGgataatttaagaaattaa-----aaattgaagaaatctctggaaagaaatgaaaatgtcagCATAACGTATCAAAACCTGTAGAACACAGCTAAAGCTGTACTGAGAGGAAAATTGGAAGCAGTAAAATCATTCATTATGAAA---AAAAGGTCTTAAATAAACAACCTTACAGAGCACCTGAAGGATTTAGAAAAGTACAAACCAGAAGTA--CAAAAGGATTAATAGAGGGAAGGTAATAATGAAGATCAAGGCAGAGATATAtgaaatcaaaactaaaaacaatg---aaaagatcaGTGGTACAGAGTTGTTGGT------AAAGGATGagcaaaatagataaata--tagcTAGACT-GCTagccaagttaaaaaaaagatacaagt----aaAACCAGATATAAAAAGGGAGACTCTAAATGATGGTTAGCACAGAAG---ACAAAGTCATAAGAACCTACTATAAAAAATTATGTGCTTAAATACTGGATAACCTGGCAGAACTGGCTAAATTCCTCAGTACATGCAACCTGTCAAAACtcaat-------------------taaata---acaaaaaatgtaaacaaatgaaCAGTCTGTAATGAGATTAGTccctcacattaaaaaaaaaagtttagaaactGCTGGTATTATTGCtaaattctaaaatatgttt----AAGAATTAATCCAAGTTCTTCTAAAACCcttctaaataaatgaaatggaagGAATTCTGCCAACTTCTTTTTATGAGGCCAACATTGTCCTTCcaccaaaaccaaacaatgatAAGACAA----GGAGGACTGTGGGGCTATATCTCCCCGTGGGCCACAGAGGCAGAAATTATCAACAAAAT----ACTAACAAACTCCAATAGC---TCATGGAAAACATACATCATAATGAAGTGCAATTCATCCCAGAGAGACATGGAtggtttaaaatatgcaaatcaataaatgtaat

a score=63471
s chr3           31774896 2882 + 160039680 ACTACCTCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAG--CTCAAAGCACACGTTGCACCTCA-CACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTA----------TGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGC---CTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA----GCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAA-TGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAG-----CCAAAAAAAGCCCAGGACCAGACGGGTTTAGTG-CAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAA-GATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaac----------------aggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaatt------ccaactcaattcttcaa----------------------------------------------------------cgaattagaagga----------------gcaatttgc----------------------------------------------------------------aaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtga-taaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctc-cttgtactaaggtcaaa--tctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacc
s HiC_scaffold_1 56713273 2940 - 233722169 actgactaaaagtcaaaggatagaaaacaatactccaccCTATAGAAAgccaaaaaaaagcaagagtagccaaTTG-----caaacaaagtggatttcaagccaaaactgatcagaagggacaaagaagatcactacatattgACTAAAGGAACAATTCAGCATAAGAAAC----------AACAATGTATGCACCAAGTACTAGTGCAccaaacttcataaaacaaacactaatggagATTTTATAAAATCAGATAAACACCAATACAGTTATAATGAGAGATCTCAATACCTGACTGTCACAAGAGGACaaatcaactagataaaaaatcaacaacaaca-------actaatcagagttgaaccaaaactttgaacaaatgggcttaaTAACtctctatagagtgttccatcc---aacaacagaatacacattcttcttggcAACATATGTGAC-TTCTCCAAAACAAATCACCTACTAG--CCCAAAAAAGGCactcttaagtaactgcaaagtaTTGAGATAATTTCATGcacattatcagatcatagtgccacaAAACTAGAAGTCAggagcaaaagaaaccacagaaactatgcaaacacatggaaa-tgaataATACCCACTTGAATAAT-CAATGATTCAAGTAGAAATAAGGAA-GAGATTAGACAGTCCCTACAATCAAGCAATAATGTCACTACAACATACCAGAATGTATGAGACACAAGGAAAGCAGTGCTAAGAAGGAAGTTTACTGTGGTGAATTTCCAC--------ACCACAGAGCACTCAAACAGATGACCTAATTATACA-CTcaacattttagaaaaacaagaacaatctaaAGTTATGCaaggaaaat------------tttataaagatcagagcagaaattaaaaaaatcaaaactaagaa---------aaagaatta---aattgaagagttggttctttgaaagaat--aaaaaatagaaaaattattatcCAGGTTtaccaaaataaggaaagaaaagacccaaatccatgcaattagaaagggaaaatgcaaaaatcacaatGGAT-TTGCCCAAATCCAG---ATCATTGGTAACTAATATGagaacttatattctaataaaatgggaaat----acagaa--gaaagattcttagatacatacaAAATACCGGAGTTGAACCAAGAGGATATGAAAATCCTGAGTAATCCAGTAAGAGTTGATGAAACTGAAg-aagtaataataattttaaaaatgatcaactAAGAGCCCAGGTCCCAGTGGATTCACTGCCAAAATTCTATAAcaactttagagaagatctaaggCCAATAGTCCTCaacttctttaatgaaattgaaagagaagcagcacTCCCCAATTAATTCCTGAAAGTAAGCATTGGCCTGATTCCAGAATCAGAAAAAGATCTAACTAAAAAAGGGAACAATAGGCCACTctctctaatgaatatagatTCAAAAGTCAccaataagatactgacaaacagaatgtgtGAAATCAtcaaaa-gatcatacatcatgaccaagtaagattcattc--------caggaataattcaacatacacaaatcaa------taatacaccacataaacagaagcaatggCAAGAATcat---atcatctcaatagacatagaaaaag--tGTGACAAaacccaacattcattcattataaaaaccctgaagaccACAAGTACAAAAtgtct-tatctcaatctgataaaatccatctatgacaaatcaatagccaacatctac-taaatggagaaaaatggaaatcttctcttctaaaatcaggaacgagATGAGGATGTCTGCTATCACCACTCCTGCTTAAAGTAGTTTtcaaaacactagccagagcaattagaaaagagaaaaaaataaaagaaatgtggataggaatgaaaga----aaaatattactatttGCA-ATGACACGATTct-tacacagaagaccc-----------ccaaatgaTTCCTAGAATGAATTACCAAATTCAGTTGCATAGCAGAATGCAGTCATTGCTCA---AAATCAGTTGTATTCCTGCACATGAGTAATAAACTcaagaaaggaggggaaaaagaagagagaaattagTGGAACAATATGTTTCACAATAgcgtttaaaaaaatgaaatatttaggcattaacctaaccaaggaagtgaaagacctctacaatgaaatttacaaaactctgaaaaagaagatcaaagaggacttcataaaaaggaaagatattccCTTTTTCTGGATAGGGAgaaccagtatagtgaaaatgatcatatttccaaaactgttacacagatttaatgcaatctcaatcaaactCATAGAACTAGAGCAATCTTTAAATTGCTATGGAACCAGTtgtcatggtggtgcacgcccataatcccagcacttgggaggttgaggcaggaggatcaccacaggttcaaggccagctactacacagtgagtctgggccagtctgaactacatagtggagaccctgtctcacacacacaaaaaaaaatccatatagaATCAAAAGAACTCATGAATAGCAAAATCAATTCATGGCAATAAGGGCAAGACAGGATGCACTGTGAT-CCAGATTCCAAATTATTCTATCTAGATATAGTGGTTAAAAGCTGTATGCTTTGGGAGCAGGGA-AGACA--TgaataaatggaacagaatagaggatgcaaaagcaactccaggaatactcagtcaccttatctttgattatGGGAC-AAATGCTTTTGCTGGAGGAAAGGGagcctcttcaacaaatggtgctgggaaaattggctttccacatgctagaGGTTG------AATCTATACTCATTTCTCTTAAAAATGGGTCagagttctaaat--attaaaaaatttaatattacaGCAGagacacttaatctgctggagtACAAAATAGgagaaattcttgaagacataggtataggcaaagactttctgaacagaa---ccctggcacaagaaataatgccaacaatcaacaaatgaaatc

a score=52083
s chr3           31774902 3374 + 160039680 [encoded data, 4297 characters]
s HiC_scaffold_1  6285594 4072 - 233722169 [encoded data, 4297 characters]

a score=15693
s chr3            31774904 928 + 160039680 AGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGATGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGT-------AAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACC--CAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCC-----AAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGG---GGTGAAATCAACCA-AGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGA
s HiC_scaffold_1 182585348 815 - 233722169 aaaatcaaagaatggaaaatgattttatatgtcA-TGACCGGAAAGGAAAAG------Tagcaatcttattttt-----aaacagaCTTCAAACTCAAACTGATCAGAAGCAGCAcaggaggtcactacatactggttaggaaaacaattcaacaggaagagataacaaatgtaaatatatatgcaccaactaccagtgcacccaactttataaaacaaacctGAATGGGcataaaagatcaaa-caaacaTCA------ACACAATTATAGTGTCAGACCTCAGTAcaccactgtcacaaacagattGACT------AGAAAAACTCAA--------------AGCTGATCAACATCGTTAGCCAAATAGACTTAATAAATATCTACAGAGCTGTCTATCCTAATACAAAAGAATATAA---CTTCTCAGCAGTATGTGAAACTtcctccaaaataaaccacat-cTAACCCATAAATCTTGCTTAAACAAAT-CAAGAGAATTAAAATTACCCCATATATACTATTAAATCATGAtgtaatgaaactagaaatcaatgacaaatgaAGCTACAGAAATTTTCCAAATATCTGtatattaaataatacactcctgaataCTCAGTGCGtcccagaagaaatcaaggaa-aaattaaa--------------cattgaa---------aCAATTTATCATCGGACCTGTGGGACACAGTGAGAGCA----------GGAAGTTC-------------CCTCCTGTTAAATCATAATTTAGATAAATTAGATA-----AGCCTTATGATGCACCTAACTGTCCTAGAAAAA--------------------------TGAACAGT---------TCAAACTCAAATCTGGTGAAAgaaatcatagaacaaattaataaaatcatataacaaattaataaaacagaga

a score=14903
s chr3            31774949 918 + 160039680 AAACAAGATGGAGTAG-CCATTTTAATAT-CGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACT--TTCATCAATGG-ACAGATCGTGGAAACAGAAACT-AAACAGGGACACAGTGAAACTAACAG--AAGTTATG-----AAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATAT------AATTGGTCACAAAACAGGCCTCAA---------CAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA
s HiC_scaffold_1 167009644 906 - 233722169 AAACAAGCAAGAGTAGGCTATCTTGTTTTTCAGATACAGCAAACTTTAAGCcagaactgatcagaagagatcAAGATGGCCATTACCTACTGGTAAAGGGAACAACTCAACAGGAAGacttaacaattttaaatatctatgcatTGAATGCTGGTACACCTAATTGCATAACACAAAAACTACTGGACTTAAAAAGACAGATGG------ACACAATACAAG-----GACTTCAGTGAGATACTAGCTCA-CAATGATATAGGTCACCTAAGcaaaaagtcaagaagagtcaagaaagaaatattagtCAAACTATACCACTGAACAAACTGGTTTAACAGATATCTACAG--TGTTTCATCAAATgacaacaaaataca--tttttctcaatAGTTCATGGAAAATTTCTCATAATAAACCATGTTTTGGCCATGGTTAATAGACCATGTTTTAGGTATgctctaaaatacaaaaa-attgaaacaatccCCTGCATACTATTAGATCATAAC-----AAAGCTAGAAATCAACATCCTAATAAGCCACAGAAACTACACAAACATAGATAGACTAAATGATATGTTATTGGATAATCAGTggatcagagaagaaataagcTAATAAA----AAAGTTCCTGGAATCAAATGACAATGGAATAACAATACACCCAAGTCTATGAAACACAATGAGAGCAGTTCTAAGAGTGAGGGTATTGACTATACCTGCACACATATAAAGAATAGAATGattccaaataaataacttaGTGATGTACCTCAAGTTCCAAGAAagacaagaacaatccaaatctaaaattaataga----aagaaattataaagatcagagtggaaattaa-----tgagattaggaaaaa-----aaaagaatcaatgaatcccagatttggttctttgaaaggatggGGAAGGGGTATAAA

a score=38857
s chr3           31775012 1940 + 160039680 AAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCACAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACA--TTCATTAAAGACACCTTA-GTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCG--TGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAA------CATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT---TTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAA--TGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATC-TCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACT--CTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCT-TATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGAC-AAAAACCACATGATCATCTCGTTAGATGCA--GAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT---AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaag--------------ctggaagcaatcccactaaaatcagggactagacaag-gctgcccactttctccctaccttttca--acatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaag
s HiC_scaffold_1 67242780 2064 - 233722169 AAATGTAAAGGAGGTTACTACATCCTAGTAAACCAAACAATTCAACAGgcagagataacaattataaatatatatgcaccaaacattgGTG-AGTctcaatttcataaaatataaactacagaaaaatataaGGACTGATAAACACCAACACAATCATAGTAGGAAACTTTAAGTC--CACTCTCACAAACAgacaggtcaactagacaaagaaa-tgaagaaagaaatatcagagttaaatCACATcattgaacaaatggactttacCTACATTTGCAGAACATTTCATTCAAAAACAACAGAATGTACCTTTTTCTGAGCact------aattttctccaaaaaagacC-----------TATATATCATCCTCAAACAAATATGCAAGATTTGAAATAATCTCTTGTATATTATtggataatagaaaaataaaattagaaatcaacagTTAAGAACTCATAAA-AAC--AATGCTAACAT----ATGGAAATTCAATAACACAGTCTTGAATAATC------------------------AATAAGTCACAGATTCAGTTCCAAGAATCAAAAACATTAGCAACACAAAATACCAAAACCTATGGGACAGGACGAAAGCAGTTATAAGAGAGAAGTTTATAGCTGTAAATGTGCTATTTAGAAAAATAAGGTGATGACAAAT------AACCCAATAATGTATCTCAAGatattagaaaaacaagagcCATTCCTACCCAAAAcctgaagaaggaaagaagttatACGTGTCAGAATAGAAATTAAGGTAAttcagaccaaaacaa--------------aaacaaaaaaagagtagtTTCCTTGAAAGTATAAacaatacatataaatatttagccaaacttttcaaaagatagaaagaaaacgTTTATACAAATGCAATTAGAAATCAAAAaggcaccaggcatggtggcacaagcttgcaatctcagcattctggagactgagacaggagcatcacagTAAGTtcgtttgaggccagtctgggatacatagtgagtttaagggcagcctgaactgcataatgaaaccctgtctcagaaatgcaataaataaacaaataagctaGAAATCAAAACTAACACTGCTGAAATCCAGAGGGTTATAAGATTATTCT--GAAAACTTACATTTCAATAAATTAGAGAaactagaagaaatggataaattcctaggCACATATGACTCACTGAAAgtggatcaagaagatatgaaaactCTGAACAAACCTATAACAGGCACTGAAATTGAAGCAA----TAATAATTGTACTGACTAAGAAAATCCCAGGACCTGATGCAGTCACTGCTGAATCTTaccagaaatttagagatgaactGATGCCTGTGTTCTTCAGTATCTTCCATAAAATTGAAAGTAAAGAAACTTATCACCAAACTTATTCCTTAAAGTTAGCATTGCCCTGATAACAAATTTGGACAAGGACTcaacacaaaaagaaatgtacaggTCCATTTCCTTaaatgaacatagattc-aaaatCCTCAACATGATCCTTGcacacagaatgaaaaaaatcttttaaaaaatcatataccATGACAAAGTCAGCTTCATTCCAGAGATGCAAAAATGGTTCATCatacaaaaatcaaagaatgaaatacatcatataaacagaaataaggataaaaaatcacataatcatctcaatagatgcatctCAAAAGCCTTTCACAAAATCCAACACCTACTCATGATTTAAAAAGTCAGACAAAAATAGGTAGGGAAGGAACTTTCTTTAAACAGATAAAAGCTAT-TAAGTCAAATCCACTGTCAACATCAtgctaaaaggaaaacaaacaaacagaaaactctgagaacattccccctaaaatcagaaacaagacaagaatttATCACTCTCCCTATTCCTGTTTGGTATATAGTACTTGAAATCTTAGCCAGAGTAATCAAGCAAGAGAAAGCAATAAAAGGGattcaaataggaaaggaagaattcaagCTACTTTAATTTGCAAAGCACATAATCCT-TATAGAGAAGACTCAAAAAA---CACCTGAAGATTTTTAGaactaataagcaaattcataaaaatca----acatacaataatcacagagagg

a score=6497
s chr3            31775108 309 + 160039680 ACATTCATTAAA------GACACCTTAGTAAAGCTCAAAGCACACGTTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATAC-CTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTG---GTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGT
s HiC_scaffold_1 207020789 300 - 233722169 ACATTAATCAAATATTAGGATACTTTAGGGGAGGATAGAGTCCA-----------ATACGGTAACAGTAGATAAATTTAACACCCCACTGTGAGCAATGGAGACATCATTCAGACAGAAAATCACCGAAGAAATAGCAGAGCTAAATTGAAGCGTAGATCAAACGGACCTAACAGGTATCTGTGAAACATTACATTGAGCAACTGCAGAATACACTCTTCTTGTGAG---CACATGGACTATTCTCCAGGAT-----AAATAGTGGCAAACTACAAAACAATTCTGAATCAATTTTGAAACACTGAAATCATACCAAGT

a score=30782
s chr3            31775153 2831 + 160039680 CCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAACTAAACAGGGACACAGTGAAACTAAC-------AGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAA-TGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC----CCTTAGCTAGACT-----CACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAG---------AAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAA--CCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCG---CTAACCGAATCCAAGAACATATTAAAGC---AATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAAT--TCAAGGCCCAT---ACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatg-atagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgca-tataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagt-------cacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagat-ctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaat-tccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaact-gcatggtactggtatagagaca--gacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccag-----tggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagc-cttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacacc----------gtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatcc-aacatatataaagaactcaagaaggtggacttca----gaaaagcaaataaccccattaaaaaatggggctcagaa-ctgaacaaagaattctca
s HiC_scaffold_1 175426227 2458 - 233722169 CCCAACACAGTAACAATGGATGACTTTCACATGCCACTTTCATCAATGAACACGTCATGCAAACC--------------ACAAAGAGCAACAAACATCAGAGATAAACTGTACATCAAATGGATCTAAAGTGTA---ACAGAACATTTCATCCAACAGCTACAAAGCACACATTATTTTCATGAGGACATGGAACTATCTCTAATA------GTAT-ATTGGTCACAAAACAAGCTT--AAAGAGTCAAAAAT--TGAAATCATATCCTGTTTTCT----GATCACGAAGA--------GGAACTTCATAAATTACACAAAT------------------ATGTGGAGACTAAGTGACATACTT-TTAATGGTGACAT-ATCaagttaaga----------aattttaaaaattgttaaaa-caaATGAGAATGGAA--ATAACATATCAAAGTTTATG----ACAACAAAAGGAGTACAAAGGGGAGTTTTCATAGCAGCAAGCTACCtacattaaaa--------------------agtaattt--caaatAATCGAGAACttagacaaataaa----------------aacaacagtagaatgaaaaaattaacaaatattaagtataaaac-------------actaaaataat--------gTATTgatca------gagttttttttttg----aaccagtaAAATTCTCAAACATTTACTTAACAAaactttaaacaataaaaaagatggaaaca--------------aaaatcagaggtgaaaaaggtgaaa-aaaaattaatactacACAAATACCAAAGATTCTTAGTGACTAGTAAGAAAAACTGCATGCTAACTAactgaaaaactt-------------aaatttctgGGTATATTCGATTTACACACATTGAACCATAAGAACATGAAAAACCTCACTAGCCCAATAAAATGTTGTGAGATTGAATCTGTAATATACAGTCTTCCGG-CAAAGAAAGTCCAGAAACGGCTaacttcactgctgaattttatcaaACTTTTATAGGCGGCATAATACAAGAGCTTCTCAACCTATTCCAAAGAACTAaaggggacaaaaaaaaaaaaacctttcataaCTCACTCTGTAAGGTCTACATTACCCTGTTACCAAAAGTCTGAGAAAAGAcaacacaaaaatagaacattgtacaTC-ATAtgcctaatgaacacaaatgcaaaatttCCCAAGAAAATACTAGAATTCAacagcacgcacacacacacaaacactaaaAACATTCACTATAATCAAGTTCATTTTATTCTGAGGAtccaaggatggttcaacat------aaccATC-----------------------------------------TATGatgatttcaatagatgcagaccAAGCATTTAATGAGATTCAACATTCCTTCACGGAAAAAGTCCT-AACAAACAGGTATAGTATAGATAAATGgaacctcaatacaataaagg--atATATGACAAAGCCATACCCTGCATCACACCGAATGCTGAACACTTT-------TCCCTCTAAGATCA------AGATAAGGTGGTCCGCTCTCATCACTTTTGTTCAACACAGTACGAGAAGTTTTAGCCAGTGCAACG-GGTAACA----GGAAtaaaatgcatacaaat----------aaatatgAGCTATC-TTATTTGCAGATTATGTGtgtagaaaaagcaaaatactc------tCTTACCAGGAAACTGTTAAA-Ctgataaa----ttcagtaaagtaacaggattaaaaaacaaacaaacaaacatcagtAGCTTTTCTATACAACAATAATGAATTTGCTGGTGAAGAAACCAGGAAAGCAGTCCCACCTACAGtaagtctcacacacacacaccccaaaac-------caAACCCCAAACCTAGGaattaacaaaacagt--------------------------aaagaaactgaagagaataCCCAAAAAGTG----CACTTCCAATAC----AGACCAGAAAGAT------------ACTGCTTA-------AAAAGTTACCTATACGTTCAGTAGTATCTCCATCAAAGTATCTGAC---ATTCTTCACTTAACTATTAAAGTCAATTCTAAAATGAACACAG---AACACAAGACCTCAGATAGTCgcaac---------aaataaaaaaagcagaggtcaa--catAATGCC---------------------AGAAACAGTAACCAAAACTAGTACGGTATTGGCACAAAAAAAAGGACACACTGACCAAGCCAGATGAATAGATATCCCTACAATAAATCCACCCCTATACTGTGAACTGATTCTTAACAACAGTGCCAAAGATACACAGGGCGCTGGAGAAATGACACTGTTTTCAAC----------------------------------------------------------TCTCACCCTGTACAACATTCAactccaaatggatcaaagagctacaCGTAGAA----------TTTAACtactagaaaaaaaacaaagaagcagcaCTTTAGTACATTTGTACAGGCAGTAATTTTCTGGACAGGACCCTAAAAGCATAGGAAACaag--caagaaatgataaatggTATTACCTCAAGTT--Aaa----ctgtacagcaaaggaaattaATGGAGGAAATTAATAAGGAAATTA----ACCAACGATATGGGAGAAACAATCCGCCAATTATTCATCTGACAGAGACTTAATATCAGAAGAtataagaagtttttaaaaa----ccattcacaAGAAAAACCAAGGGATCCAATTTAATTAAACGGTAAATAAtctgaatagatacttctca

a score=30781
s chr3           31775157 1312 + 160039680 ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCGTGGAAACAGAAAC-TAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCAC--CATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG----AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAG-----TTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATT------AATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAA-----TAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATAT
s HiC_scaffold_1 81049449 1276 - 233722169 ACACAGTTATAGTGGGAGACCTCAGTATCCCACTATCAaaaatagatcaacc----agacaaaaatatcaacaaacacatatcagagttgaacaaaactttcaaacaaatggacttaatagatgtctacAGTGTGTCCCACtc---aacaacagaaaacacattcttcttagaAGCATATGGAATGTTCTCCACAATAAACCATATAGGATACCATAAgccatgcttaagtaaatgcaaaaaaatgaaaattattctttACATATTACCAGATCAAAGCACAGTAACAGAGAAATC---AATGACCAAAGAagccacagaaattatgcaaatacaaggaaattaagcaatattgttttgaataatcaatgagtcacagaagtaACCAAGGGAG-----------TTCCTAAAATCAAACAGCACTACCAGTACAACATTCCAGAAATTATAAGACATA--GAAAGCAGTTTTAAGAGGGAA---------------TATCCACAACAGGAAGACAGAACGAGCACAAATAGACAATCCAATGATACACCTCAAGGTCCTCCCAaaata--atccaaat----ccaaagccagtacaaggaagaaaattataaagatcagaacagaaattaatgaaattgagacaaaaaataaaaccaattaaaatgaaCAATGAATCCCAAAGCTGACActtcaaaaaaatgaatgaaatagacaaatgcttagccaatcttatcaaaaaaga-aaagagaagacctAAGTCAGTGTAATTAGAAATAAAGAGGT-GAAATCACAATGCACATTGCCAAAATCTAAAAGAATATTAATGACTGCTTTTAAAGGCTGTACTCCAATACATTGGAGAACTCAGAAGAAGTGGAAGGACTTCTAGACT----CTATGAATTTCAGTAGAAACTGAACCCAGAAATATAAACAACCTGAATATTCCAATAACAgccaatgaaattaaaacaataatttttaaaaaaaccctgccaactaagaaaagtccaggatgcaatggattcactgctgaaatcTATAAGAACTTTAGGGGAGATCTAATGCCAATgttcctcaaaatctttaataaaattgaaaaggaaggaatacTTTCAACATTATTCCTGGAAGCTAACATTACCATTATTccaacaacaattaaa---------aaaaaaaagaattacatgcCAATTTCTTTAATGATCATGAATGCAAAAGTTCCCAACCAGATacaatactggcaaacagaatacaacaaattatcaaaatgatCATACATCTTGACCAAGCAGGCTTTCTCCTAGGGATGCAAGGGTGTTTCAGTAT

a score=14341
s chr3            31775211 515 + 160039680 GGAAACAGAAACTAAACAGGGACACAGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAA------GCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAA
s HiC_scaffold_1 127275207 512 - 233722169 ggaaaaagacaaaaaaaaaaaaaaaaattaaagcaataacaGC-ATTGatcaaatggacttaacagataGCTACAGAGAATGTCATTAAATGACAACAGAATACACAATTTTCTCAGTAGCACATGGAACTcattccaaaatagaccacattttAGATCATAAAGAAtatctaaataaatacaaaagaatttaaataatcttCTGCATATTATTAAATcataacagaataaagctaaaaatcaataggaaaataaaccacagaaattaCATGCCAACA----CACGAAGATCAAAGAGTACATTACTATATAATCAAtacatcacagaagaaatcagggaTGAAGTAAAGAAGCTTCTAGAATCAAATGGCAAAGGAAGCACAACATGCCAAAATGTATGGGACACAATGAATGTAACACCAAGAAGGGAGTTTATAGTTGTGAGTATATACAATAAAAGAAGTGAGCAATCCCA----AGTAACTTAATGATGCATTTtaagttcctagaaaaacaagaa

a score=56809
s chr3           31775236 2195 + 160039680 AGTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCAC-CATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAA--------ATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAG----GGCACAGGGACAAAATCCT--AATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTT--TTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttt-tcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttct--caatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaat-ctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc-taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaa----ctgcatggtactggtatagagacagacaagtaga
s HiC_scaffold_1 97120744 2136 - 233722169 agaaaacccactagaA---ATACAGCAAATGGATGTGGTAGATGTCTGCAGAATGTTCTATCCTAcaaaatcaaaatacacattcttctctgctgcTTATAAGACAGTCTCCAAATTAGAACACATACTAGCTTatagagcatgcttaagtaagtgaaaaggaattgaaattatctcatgcgtATCATCAGACCAAGCATAGTGCAA---TGAATTggaa-atcaaaagaaatcac--atatTTCATAAACACATG-CAATTCAACAATGACCTCCTGAATAATCATAGGGTCTCaggtgaaatttaagaaaaagttaGACAGTTTTACCA--TTAAGGCCAATG------CAACATACAAGAACTTATGGGGCACAATGAAATCAGTCCTATGAGAGAAATTCATAGCACTGAATACCCAagtcaagaaaacagagcaagctcaaataaacaacttaacgCTAAAACTCAAGTTTccagaaaaggagcaagtcaa---gcccaatgtTTGTACAGTGAAGGAACATTAGAGATATTGAAGCAGAATAATG----CAACAAAG-----ATTAGGAAAACTATATAAAGAATCAGTAGATTGAATAGTTAATActttgacagattaaataaaactgataaactctTAGACAAccttctcaaaaaaacaaaagaggaaaaaaatcctcaaatctatgcaattagtaatgaaaagaatgaaatcacaatACTTTCTGCAGAAATGTAA---GTCAACAATCTCTACTTCAAGAACCTGTgttctaataagatagaaaacacaaaagaaatggatagattcctagatacacatgagTTATCacagatgaataaagaagatataaaatttctaaataaaccaatgtcaatcagtgaaattgaagatacaattaaaaacctacaaacagagaaaagcccaggacctagAAGATTCCTTTctgaattctacatgaaatttaaagaatACCTAAATCCGCTACTTTTCAAATTCCTTAATgcaactgaaagggaagcaacgctcccaaattcattcctgaaattAAC--CTATTTTGATGCCAGCATCACAGAAGGTTCCAACCAAAA-AGAGAGCTATAGATCAATGTCTA--ATGAACCTAGACACAAAAATCC-AAATaatatactggcaaacagaatgcagca----atcAACAAGATTATATATCGTGACCAACTAGGACTCATCCCAAGTATACAGGGCT-GTTCagaatatgcaaatcaataaatataatacattaaattaacagagccaagaacaaaatgTATATGATTATCTCAATGGACGCAGAAGTG----TTGACAAAGTTGAACa-ccgttcatgataaaaaatactatagaaaattggaat--aaaatctTTATCTCCATCTGATGAAAGTCACCTATGACACACCATCAACCAACAT---ATTacatggataaaaactgaaaactttcactctaaaatcaggaacaagacaaggatgttca--ttatcaccactgttatcagcatagttctggaaacattagccagagcaattagagaacagaaaaacataaaatgaataatgataataaaa-aagaatttaaattatca-tttctgCAGATGATATAGTACTCTAAATAGAAGGCCTCAAAAATTCTGCCAAAGACATTCTAgagttaataatcaaatttaataGCGTAGATGGAcacagtcaacactcaa--aactcaattgC--------------------AACTCACTGATATTGACATTAGGGAAAAAACATCTTTATAATagtattcaaaaaataaataaaatacctaggaatcaatgtaATAAAGTAAGTAAaggatctttacattgaaaact--aaatactctgaaaaaggagattgaaagatatatcagaaaatggaaatatacccCTTGTTATTGTGTAGGAagagccaatatagtgaaaatttccaccttccaaaaattattatacaaatttaatgcaatcctgatgaaaataccaatagcatatcacatagaattagataaaacagttctaaaaatcatttgtaaccagaagagaccttaaaatagcaaaagcaattttgggtTACAAAGGCATGGAAGG-GGCATCATAACtcatgatttgaaattatactacaaaactactatgataaaaataacCATCATGGTACCGt--cagaaacaagcaaacaga

a score=12746
s chr3            31775251 1335 + 160039680 AGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATC--CTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACAC--AATGAAAGCATTTTTAAGAGGGAAA-------CTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATAC---TAGCAG--CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCA-----------CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-------AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACA------AATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCA-----CTATTATTCTGATACCTAAACCA---CAGAAAGACCCA------------------------ACAAAGATAGAG-------AACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAAT-CCTCAATAAAATTCTCGCTAACC-----------GAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGG-------------ATGGTTTAATATATG---AAAATCCATCAATGTAATCCATTAT-------------------------ATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA
s HiC_scaffold_1 196021377 1372 - 233722169 AACTATACTACAACTAGAGGTAACCAACATTTATAGACCATTCCAACAACGAGAGCAAAA---TGTATGCTCCTCTCAGGCAGACATGGAACTTTCTCAAAAATACACCATATGTTAGGCCACAAAACAAGCCCTAACAAATTTAAAAGGATTGAAatcatgcaa-ataaaattttgaaacataaagGAATTAAATTGGAAGTCAACAACAGAAAGAGAGTTAGGAAATTCACAGGCatacagaaatt-aacagaa----gCCCAAGTAAACAATGATTCAAAAAGTAATAGTGA---ATATTAGAAAC------ACATTCAGATGAAATGAAACCACAACATAAGAGCAACTATATGTCACTGAATTAGATAAtttagatgaaataaaaaatatttctataaagaCACATTTACCTAAAATGACTCAAAAAGGATTAAATGCTCATAGCAGGCCTCAACCCAATAACCTAGTATTTcagaataaggaatgaaaaatagaataatagcGAGCTAAAGTAACATAAGCAGcagaaaagaactaaaaattatattgaaaataaatgacagaaaattattaaaaagaagag------agaatattAAGGAAAGTAAAAATTGAACCTTTTAGAAGAACCACACAATGGACAATTTTTAAGCTAGATTTAGCTCGAGAAAAACAGTTAAGATTCAGGTTATTAAGATCAAGAATAACAAAGG-GTTATCACTGGTAAGtttgaagaaatagaagaaaagaacagG--ATTGTATAAGCCACCCTTTTCCAGGAAATGAGACAAATTGGACATAATGgaaaatcattaatttt---atagACATTAG---------------------CAAATTGGGAATtca-----------gtaaccaaaaaaa------------------aatgccACATACAAAGCATGAC-----CCAAATGGCTCCATTGTTGAAATCTACTAAACACATAAaagacatttaatatttattcttcaccAAC----TCACCAGAATAAAGTCAAAACAATTATTTCCAACTCCTCCTATGAGGCTAATAGCATATTACTGTAATATTAAAATCAGAGCACAGGGTCACATGATGGATGCATTTGTTATGTATCACAGTGATGCAGTTTAACAAATGACAGGTCACTACCACTCATGAGTGTAA--GCAAAAACGTCTCAGCAAAATTGTAGCAAATCAGATATGtataaaatgcagaaatatataaaa--aattatctAACATGATAAAATGGTATTTATGCTAGAAGTACAAAGTTCACTAACcaataacattaaaaatgtgtTAAGAAACAATCAATGGATTCTATCATTCAACAATGAATCATAAAACACAAcattaacagaataaaagataaaaa-cacaggAGCATCTCAGTATATGCAGCAAAAGCGTTAGACAAGCTGC-ATTCTCTTTCATGATAAA

a score=5175
s chr3            31775254 206 + 160039680 TATGAAACAAATGGACCTGACAGATAT------------------------CTACAG-----------AACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACA
s HiC_scaffold_1 102006800 241 - 233722169 TGTAGAGCAAATGGACCTAACAGGTAgagtacatacatacatacatacatattacaGGGAATGCTGTAAATATTCCAtccaatagaagcagaaaaatcaGTCTTTTAAAGCCCTTTAGGAACATTTTCCAGGATAGAACACATGTTAGGTCACAAAACAAGTCTTAACAAACTGAAAATGTCTAAAATCACACCAAGTATCTTTTCCAACCACAatggaataaaattagaaattaataaca

a score=12071
s chr3            31775272 1314 + 160039680 GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGT-CCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTC---TTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACC-TATG-------------------GGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAA-------ACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAG-----TGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAGAGGGCACAG-GGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACA------AATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCA-----------CTATTATTCTGATACCTAAACCACAGAA---------AGACCCA-------------ACAAAGATAGA-------GAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACC-----------GAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGG-----------ATGGTTTAATATATG---AAAATCCATCAATGTAATCCATTAT----------------------ATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA
s HiC_scaffold_1 196917544 1339 - 233722169 GACGCACATTTATAGACCATTACACCCAGCAAGAGCAAAATGTATGCTCCTCTCAAGCATTCATAGAACCTTCTCAAAAATACACCATATGTTGGACCACAAAACAAATCCTAACaaatttaaaaggattaaaatcatgcaaaaaaaagattttgaaacacAAGGGAATTAAGTTGGAagtcaacaacagaaagaaatttaagaaattcaCAGGTatacagaaattaacagaagCCCAAGTAAACAATGAT-------TCAAAGAAGTAACCGTGA---AAATTAGAAAC------ACGTTcagatgaaatgaaaacacaacataaCTGAACCATATGTCAATGAATTAGATAAtttagatgaaataaaaaatatttctagaaagacatattta-cttaaaatgactcaaaaatgaataaatgctcAGAGCAGGACTCGACCCAATAACCTAGTATTTCagagtaaagaattaaaaatagaataat--agtGAGCTAAAGTAACATAAGCAAcagaaaagaactaaaaattatattgaaaatgacataaatttttaaaaataagagagaatattaaagaaa-------------aagttgAATCTTTTAGACGAACCACAAAATTGACAATTTTTAAGCTAGATTTAGCTTGAGAACAAAGAAGACACAATTCAAGTTATTAAGATCAAGAATAACAAAGG-GTTATCATTGGTAAATTtgtagaaatagaagaaaagaacaga--atcCTATAAACCACCCTATTCCAGAAAATGAGACAAATTGGACAAAGTGGGAAATGATTAATTTC---ACAGACATTAG----------CAAATAGGGA--AATTCAGCAACCCAAAAAATGCCACAT--------------------------------------------ACAAAGCAAGACCCAGATGGCTCCATTGTTGAATTCTACCAAACACATAAaagacatttaatatttattctttaccAAC----TCACCAGAATAAAGTCAGAACAATTATTTCCAACCCCTCCTATGAGGCTAATAGCATATTCCTGTAATACTAAAAATCAGAGCACAGCATCATATGATGGATGCATTCGTTATGCATCACAGTGATACAATTTTACAAATGACAGGTCACTACCACTCGTGAGTGTAAGC----AAAGTCTCAGCAAAAGGATAGCAAATCAGATACGtataaaatgcagaaatata-taaaaagattatcCTACATGACCAAATGATATTTATGCTTGGAATACAAAGTTCACTGCACCAACATTAAAAATGTGGTaagaaaaaatcaatgaattctaTCATTCAACAACGAATCATAGAACAcattaacagaataaaagataaaa--cacagGAATATCTCAGTATACACAGCAAAAGCACTAGACAAGCTGC-GTTCTCTTTCATCACAAA

a score=44847
s chr3           31775273 2455 + 160039680 ACAGATATCTACAGAACATTTTATCCTAAAACAAA--AGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA-CAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCCTATCAGACCACCATGGCC-TAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACA--CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCA-AACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAG--GAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAG---AGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAA------------------ATCCAAAACACCATCA---------------------GATCCTTCTACAAAAGGCTATACT------------------------------CAACAAAAC--------------TGGAA--------------------------AACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAA------ATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCA-AAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCT----AACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGAC-------AAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAA-----------------GGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtactt-gaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattct------accagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcag--aagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtact---------------------------ggtatag----------------------------------------------------------------------------------agacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagaca----ctgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaa
s HiC_scaffold_1 72283543 2558 - 233722169 ACAAATTTCTAAATATCATCCTTCACTAAAACAAATCAGGGCATAC-------TAAA------ACATGGCTGGTTCCAGAACA------AGAGTAGGTCAATAAAACAAGcttaagaagatgtaaaagaattgaaattataccatgtatatttttatatc-ctaCAGCAATAAAGTTAGAAAtcaattacaaaagaaaacacaaaaattatccAAT-GCATGAAAACTAAACAATAAGCTCTTCTTCAAGGGATTAgag---aagaagaaatcaaagaagatgtTAAGACAGTTTCTAGAACTAAATGATGATTGCAGTA-AACATAATCAGAATTTAAGGGACACAACAAAAGCAGTTCTAAGTGGGAAGCTTATAGCTGTAAATGCCCACATGAGAAAAGCAgagcaagcccaaataaataacctaacaaTGCTcttcaagctcctagaaaaacaagaa--caattcaaACTCAAAAGTCATCAAAAGGGAGGAAAACATAAGGGTTAgatcagaaatcaatgaaattgagaccaaaaaaaaaaaaaaaaaaaaaaattcaatgaacCGAGTtaattcttcaaaagaataaacaaaacagacaaaccctTTGCCAAGCTCATCAatgtaaagcagaaaaaaaagacccaaatcaacacaattagaaataaaaacggtgaaatcaaaatggataccACTGAGTCAGGCGTGACagcgcatgtctgtaatcccagcactcaggaagttgaggtaAGAGGTTTCCCttactcaaggccaacctgagctacaaatgagaccctgtctcaaataacaaaaaaacaaaacaagacactgTGGAACTCAAAAAGATTATTATGTTGCAAGGAATCCAGAAGAAAtg---agattcctagatatatatgaattattaaaactgaaccaag---aag------atttaaaaactctAA-ATAATCCAGGGAAGCGAtcataaaa---------aaaaacctaccaactgagaaaagcccaggtct------tttCACTGCTGGATTGTACAAAAACTTCAGGGGAAGATCTAACACCAGTGttcctcaagctctttaatgaaaatgaaaaagaaagaatatccCCCAAATCCT----AGAAGCTAGCACTACCCTGATTCCACAACTAGACAAGGATCCAACCAACAAagtgaactacaggccaatctctttaatgaatatagacgcaaaaatccttaataaggtACTGACTGGCAAACAGAGTATaatgaatcatcaaaaagatcatgcaTAACGAACAAATTGGCTTTATCCTGCAGATGCAAGAATGGCTCAGCATAtgcacatcaataaatgtaataaat--aactAACAGAAtccaagatcttttaaaaaaatgacatgatcatctcaatagatgcaaaaaaggcttctgataaaatccaacagt--ttcctgaaaaaaaaaaaaaaaaaaaaacaaactcaagaaaATAGGTAAGGAtggaccttatctcaatctgataaaatccatttaTGAC-TACTATTAATTAATACCATATTAAAtg-------actgaaagcttttcctctaaaatcaggaacaagacaagaatgcccACTATTACCATCCCTGTTCAACACAGTACTTGGAAAaattagcaagagcaattaggcaagaaaaaga----aaaggaatgtggatagaaaaagaaga----aaaatttccattATTGAAGA--------------------------CTTAGAATACTCAACACACCAAAGGACTCt----ctgaataaccaaattcagtaatgtagtagGATATA--------------AAGTCAATAGGGTTCCTATACACTAATATGAACC---TAAACAAAGAAATGAGG--AACAATACTTTTTATAATAGCATGAAGAACCATTAAATATATAGGAATTAACTGAACTAAGG--------GATCTCTATGATAAAAACTACAGTATGCTGAAAAAGGGAAATCCAGGAGATCATGGGAAAAATGGTAAGATAGCTCCTGTTCCTGAACAGGCaaaaccaatatagtcaaaatggtcatacttccacaACTGATACGtggatttaatgt------------aattccaac---aGTATTCacaaaactggagaaaaaaatcctaaaactcatACAGACCAG-AAGAGACTCAAAATAGTAAAAGGAATCATGGATAACAAGAGGAAAGTGGGGAGCTTCTTAATCCCAGACTT-GAGTTGGATTGTggagctacaatgataaaaatagcagggtactaacacaaaaacagacaccaggcccgagggtttagctcagcggtttgAGTGCCTACCTaccaagtgcaaggtcgtgagttcagtccctagtaccaaaacaaaaacaaacaaaaaataaaacagacaagagGATCAATGTAACAAAATAGAGGGTGCAAAAACAACCCCAAATACATTCAACAATTTGATATCTGACAGAGTGGCCAAAATCAAGCACTAGAGGAAAGAAAGCCGTGTTAGTAA----TGCTGAGAAAACTGCCTCCCTACCCGAACAAGACTG-----------AAATCTCTCAtcaggcactaaactaaaattaaaatagatcaa-gaactaaatgtttaaaaagaaatagttgctgaaa---------gataaaatagttaaaaCTCTTG-AGTCACTGGCGcagacaaggactttctgaa

a score=9566
s chr3           31775289 380 + 160039680 CATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATT-----GTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGG
s HiC_scaffold_1 36727998 376 - 233722169 CAGTCCACCCCACAACAacagagtatacattcttctcagcagcacatacaACTTTCTCCAAA-CAGACATTATCTGAGCCAATAAAACATgcctaaataaatgcaaaa-taatgagTTTTATACAACACAT-TATCAAATCCAAGCACAATACC-----ACTAgaaatcaaaggcaaaagaaaccacaaaaattatgcaaatgcatggaaa-taaataatatattcctgaataatcagtgggtcacagaagaaatcaacaaagaaataagacagttcctagaattacaagataatgccagtacaatatAATAGAACTTATGGGACATAATAAAAGCATTAATAAGAGGAAAATTGATAACTGTGAATGTCCATAtcagaaaacag

a score=9871
s chr3           31775318 1295 + 160039680 TTCTTCTCAGCTCCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTATCC---TATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAAGCCAACATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCA-AATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATT-CTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAA-AGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGA-TCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGC
s HiC_scaffold_1 43192996 1084 - 233722169 TTCTTTTCAAGGCTTCACAGACTATTTACTAAGAAGGCCCATCTC-CTGACCACCAC-CAACTCTCCacgaatttaaaaaaattgaaacccAGACATATTCCCGGGTGTCAGAGAATC-TAACTTGAAAC-------CCATAGCAGGAGGGCAACGGGATAATCTTCAAACGCTTGTAAACGAAATGACACACTTTGAAACAATCCACAAGTCAAGGAAAGAAAAGTGCA-----------------CAGAACTGAAAGAAAGGCAAACCTTGATTTATCAGACCTTGCGGGGTGAAGCTAAGGCGGGACCCGGAGGGAGGTGTGTGGCCGTGTTT--------------ACAGCGGAAAACCCAAGC---CTGTCTCACCTCCCACCTGAAGAAACCAGAATAACAG--AGCAGAATGAAACCAAG------------TAGGAAATAATCAATGT-AGAAGTAAAACGAATATGACTTAAgtcagaaaaa---tggagaaaatcaaT-AAACGCAAAGCTGTTTCTTTCAAAAGTTCCATGAAATTGAGGAACATTTACCAAAGCTAAC-AGAGGGGAAGGACAGAAGATGCGAGTTATCAATATGGGGAAGGGCGCGAAAGACACCCCTGTGGATCCCAGAGAC-CCTAAAAGATAGTTGGGGAATGTGATGGGGAACTCTGGGTG-CAAATCTGACAA--TTAGATACGATGGAGAACTCTTTGGA--------------------------AAGCACAGACTTACAATTTA-----TCTGATAT----GAAACAAAT-------CTGATGAATA----------CAATTAAAG------------------------------------------------AGATGAAATT----------------------------TATAAGAAAAGGGCACACT-TGCAACTTATTTTGTGAGAGCTATATTATTGTTGGTaccaaaccca-----------aacaaaaat-TAGCACACTATACCAAT---------GAATACACATGCCAAAACCCTGAACAAAACAACAGCAGCTAGAATTTAGCACTGGGTAAAAGGAATTACACATCATGGCCAAATGGACTTTATGCTAGAGATATAAGACTAGCTTCATATTTGAAGATTAATCAATATCATCCACCGTATAGCCAGCCAAAGCAGAAAAAGATCATGTGATCATGTTAACCAATATGGAAAAATCATTAGACAGAATTTTGCCACTCATCCATGGAAAACCTTCTTAAAAAGTAGGAATATAGGGC

a score=8628
s chr3            31775339 463 + 160039680 ACCTTCTCCAAAATTG-ACCATATAATTGGTCACAAAACAGGCCTCAACAGATACAAAAATAATGAAATTGTCCCATGTAT-CCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAACGGAAA---GCCAACATTCACGTGGAAAC-----TGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 135153238 439 - 233722169 ACTTTCtccaaaattttgccaaatactAACCCATAAAGCacacttaaataaatacaaag---------ttatCTGATATATGAAaatcatagtacaatg----aaactggaaaccCAATTGCAGAAGAAACAACAGAATTATGTAAACACATGGATATAAACATacttgaataa--------tcaatga-------gtcatgggagaaataaaggaagaaagtagATAATTGcattaataaaatgataatgcCATTTCAACATACCAGAGCCTATGGGGCACAATGAAATCAGTCCTAAGAGGGAGATTTATAGCTACAAATGCCTACACCAGAAAAATATGgaaagcccaaataaataacctaatgaaaCATCTaatatc-caacataagaacaagGCAAAT----CCAAAGCTAGTA-CTGGATGGAACTTACAAAGATCAGTGTAGATGTTAataaaattgagattaaaa

a score=8406
s chr3           31775481 370 + 160039680 CATTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCC--AAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA------AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 24186820 354 - 233722169 CATGTATTTGGAGACTAAATAACATGTTATTGAATAATCaataaatcacagaagaaatcagggaagaaataaaaagatttctaGAATCAAATTGCAATGGAAGCACAACATATCAAAGCCTGAGGGACATGATGGAAACATTTCTAAGGGGAAATGTCATAGAT-TAAATGCACACGTAAGAAGA-----GAGTAATCTCAAATAAATAACTGAG----------AAAGGTCCTAGAAATAACCTAGAAAGATAAAGAGTAATCCAA----ATCTGAAGGAAGGAATTTacaaagatcagagtggaaagtAATGAAGTTGAGACTAAAAA----ACACAAAGGACCAATGATGCAAAGAGCTGATTACTTGAAAGGAT

a score=21455
s chr3            31775570 2342 + 160039680 AATGAAAATGAAGCCACAACGTACCCAAACCTATGGGAC--ACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGG----GAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTC-AACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTT---GACAAGATCCAACACCCATTCATGAT----AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagc----aattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggc-------ctttctctatac-----------------------------------------aaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaat--------------------------agtcaca-----aataatataaaa---------taccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa-actcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacac--acgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgg-ggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactc
s HiC_scaffold_1 177954996 2188 - 233722169 aatagaaataatagtACAACATACAAAAG---ATAGGACGTATAGCTAAAACAGTGCTAAA--GGATATTTCTACCTATAAATGAC---AATATTAAA----AGAGAACG---------ATCTTAA------ATCAAAAACCTAAATTAAAACAGGAAACA------------------------CAGGACAAACTAAAAGCCaagtaagaaaggaa---agaggaaaaaaactgaa------aaaaaatcaatgagactAAAAGCTGGCTGCTTGAAAAAATTAACTG---------ACTTTTAGGTAAATCAGCAATCACACACAG----AACATTCAAATT-ATTAAGTCTGAAATAAAACTGTTCagaaattttatagaaataactatgaaaataaaaataattataaaggaaCTGTATAAATAACTGTACACTAACATATCATGTAACTTTTGACAAAATGGGCAAATTG-GAGAAAGATGCAGATTATAAAAACTAACTCAAAAG-AGATAAGCCATTTGAATGTGCctataataaatgaagaaaaagactCAGTCatcaaaaacaaagca-caatGAAAATTTCAGGCTCAGATGG-TTTAatccaaaat-------gtattttaaaaaaattaaaatgtc-----------------tccAAAAAGTAGAAGAGGAGGGGAAACTTTCCAGTTGTTTTTATAAGGCATAAATAATCTTGATACC---------------------AAAAATGAAGAGTAT-AGATTAAAAGTTCTTA-GAAGACTGATGCATAAATTCTCAATATAATATTAGCCAACTGAATCTAGAAACTTTTAAGTAGAATTATGAATTATGACCAAGTAAAATTTAGCCCATCAGTGcaagtttattttaatattccCAAATAAATTAGTATAA-----TGTGTCAAGCCAGTGGAAtagaaaaatcatataatcatctcagtagatacagaga----atttgcagaaataatccaac-ctcttttatgattaaaaaaaatctcagcaaactaaaaataaa------tttcttcaaaattagaAAAGGCATTCACAATTAACCTATAGCTAAGGTTATACTTAATAATGA-AAGCTGT-----TTTCCCCTAAAACCAAGAGTGACACACAGATCTTCGTTATCTCAGTCTCTATTCACTATTGTATTAGAGGTTTTA-TCAGAGCTGgttattcaaga--aaaagaaagtaaaacgcATCAGTATTAGAAAA---GAAGTAAAACCTTCTCCATGCGGAAA-AATACAAACTTAAATACAGAAAACCATAAAGAGTCCACTAAAAAAGCATAAGAACTAATAAGTA------GTGTAGtaagtttataaaatataaaaggaaaataaaaaatggtaagagtacttACTTAGCATGTGCCAGGCCTTGAATTCAAGCCACAGCATttgagagagaggagaaagagagagagagagacagagacagagaagagaacaCATTTCTAAACACTTCCAATGAacaatctgaaaatgaaatcacattgacaatagcatcaaaaagaataattacttagatataaaatcaacaaaataagcaaagaatTTATACTCTAAAAGTACCAAGTat-tgttgaaagaaattaaagaagatcaAAATAAATGGGACAATATACTACATTGATGAACTGAAACACTGAACAGTGT-TAGATGTTAATATTCCCCAAATAGCCTCATAGATGCAGTTTAATCCCTGTAAGAGTTCCAGCTGACATCTT------GCTAGAAA--------TAAAACTTCACAGGGATTGTTAAGGAAC----AATACCAAAACAATCttgataaagaaaaaagtat-----gagGATCCACGGTTTCTAATTTCA-----TAATATAAAGCAGTGATAACAAGGACAGCA-GGCACTGAGAAAAGGATAAAC--GTAGCCTACTGGACTAGAATTGACAGCCTAGAGATAAATCCACACCTaagaatagtt-tttgttt-------------------------------------------ttttaaacaaatgattcCAGGTTAATTCGATAGCAACATGCAGAAATCTATGCTGCAA-CCTTGCCTTGCAATATTTACTAAAATTTACTCAAAACAGATCAAAGGCCTATATATTAGAACTAAAactgtaaaagttttaaaagaaaaagtaatagtACATCTTCAAAAACCT-------------AAATCTGGTGACATAACACCAAAGGCATAATCTACAAAA--GAGAATAGATAAATTTGTCTTCATTACA-TAGGAAATTTCTGTTC-TTAAATGATGTCATCaagaaagttaaatg---------aaatagaaaacaggtaTCTGTAAGTCACAGGTCTGAAAAGTGATTTGTGTACAGATTATAGAAAACACTC

a score=19100
s chr3           31775596 1097 + 160039680 AAACCTATGGGACACAATGAAAGCATTTTTAAGAGGGAAACTCATAGCTCTGAATGCCTCCAAGAAGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAA------AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAA--------TTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGA---TCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGAC---CCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA--AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaat
s HiC_scaffold_1 78466903 1069 - 233722169 aatcccacaGGGCACAATAATA-CAATCCTAAAATGAAAGTTTATAGCCATGATAGCAAAcattaaaagaacagaataattcCAAATGAATA-CCCAATAAAGCATCTCAAGGttctagaaatttttttaaaaagactaaattcA-----AAACTGTAAAAGGAAAACATTA--CAAAACCAGTTCCAAAATtcatgaaattgagactaaagaaa---tacaaaggattaataaattaaataaatgattctttgaaatgataagcaaaattaattaaatgttagccaaacatcaaaaaaaaaaaaagaaaaaaa----aatcaatgcaattaaaaataaaataggtgaaaTAACAAA----TCTGCAGAAATTCAGATAACtataagaaacaattttaaaaa-ctatattcaa--AAATTGGTGTATGTAGGATAAATGGAGAAACATAGACATATTTTGACATATTTGATTTATTGAATCTCAAACAAGAGACTTAAACTCACTGAACAGACAat--------aatcaatgaaatagaaaga-gtGCTAAAAACTGC---ACCAAGAAAAGCCTTGGACTTGATGGATTTACTGCATAAATCTACCTGAACTTCAAGTAAGATCTAACACTAATAATCTTCAAG-TCttccataaaattataaaaaaaaggaGCTCACAAAACTCATTACTTGAAACTAGCATTAGCATAATACCAAAACCAAGCAAGAACttttcaacaaaaa-ataaaactgtaggcCCATCTTCTGAGTGAACATAG----AAAACTcctc---aaaataatagtaaaatgaaaGTAGAAGGTCATTAAAAAAGTCATACTTCATGAGTAAACTAGCTTCAACTCAAGGATGCAAAGACACTTCAACAAATGTAAGT-AATAAACATAGTGCCTTGCATAAACAGAGGGgagaacaaaaaatacatgatcaTCTGAATAAATTCAGACGAA--ATTTAACAGAATCCAAAATTCAATCATGAAAAAAATCCCTAATGAAAATAGATATGGAAAAAACAT--CTCAAACTGATCTAAG-AATTTATGACAAATCCCATCCTCACATCATATTGAATGGGATAAAACTGAAAGCAAT

a score=10010
s chr3            31775765 652 + 160039680 AAACTCAGGGGTG----AAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAA-AGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT------CAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAG-TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGAC-CAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCA
s HiC_scaffold_1 195772441 627 - 233722169 AAACTCGCGAGTACACAAAAT--ACAAgatagaaacaaaagaga--------aaaaccaatgaAAAGCAGAGTTGGTTCTTTGTTGAGAGCAAGGAAGT-GAAATCTCTTTAAGCAGACTAAC---------CATGAAAATAGTCGAACacta--aaatgaaaagtgaaagagTGTGTTATTGGCAC---CCTTGCAAAAGTGAAAAGGTTTATAATATATT---------GGTTATAATGTGTGCCAACAAA-TTAGATCATGTGGATGAAGCTTTAAAATTCCTGGACAGACACAAACTACTGCAAGGGATtcaagtaaaaatagaaaactagaaGAC--ACATATTAACTAAAAGTACTGAATTAGTGTTTAGAAAACTTCCCATTAAAAAAAGCCCAGACCCATATTGGCTTAGCTGATGAATTCTAGCCAACATTTATAGAAGAATTACTTCAATTCCTTCAAATATTCATGCAAAATATAGAAGAGAAGGAAAGTCTTTCCAGCTTATTATATGAGGTTATTATTATCATGATGCTAACcagacaaaaacatttaaaatgaaaagaaaattatagatatTACATTCCTTGTGAATATAACTGCAAACATCTTCCTCAGAACACTAG-TAAATGATtccataaatgttttaaaaggattA

a score=60660
s chr3            31775834 2631 + 160039680 TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACT----AGAGGGCACAGGGACAAAATCCTAATTTACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAG---CCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAA-----GGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattc----------------------taccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatc-tcagaagatggaaagat----------------------------------------------------------------------------ctccca----------------------------------tgctcatggattggcaggatcaacattgtaaaaatggcta-------tcttgc---------------caaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgat-----------------aaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatca--agaattgacaaatgggacctcatgaaactccaaagtttctgcaaggc-aaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaa-------aagcaaat--------------aaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcagg---------------tgacagcagatg-------ctggcg--------------------------------------------------------------------------tggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga--------tgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatg---aatttatgaaat
s HiC_scaffold_1 107590616 2836 - 233722169 TGgaactttaaaacattaaataaaatagacaaacacttagccaaccttatctaaaaaaggaaacaaagaaaagactcAGATCCATTCAAT-AAAGATTAAATGGGTAAAATCataacagatcctgcagaaatccagaaagtcAATAATACCTACTTCAA---------CTCTAGTAAGacggaaaacacagaagaaatgaacagacctctagatacatatgaattcctgaagctgaatcaagaagatataaaaattctaaataaaccagtatcattCAGTGAAGTCAAAGAAggaatttaaaa----acaatcaaaaagagTAACCCGGGTCCTCATGAATATGCTGttaaattctttaagaaatttagagaagatcaaATGCCACTAATCCTCa--ctctttaaggaaattgaaatgAAAGTAATACTCCCAAATTTATTCCTAGAATCAAGCATTACTC--ATACCAAATCtggagaaggatccaaccaaaa---acaactATAAGTCAATCTCTCAGCTGAACATCAatgcaaaa-tcttcaataagatactggcaaacc-aATGCTAtacatcatcaagaagattatgcagcATGACCACATAGGATTggtcccagggatgcaaggatggctcaatgTATGCAAACCAATCAATACAACACATTA-----ACATACTCAAGGTCAAAAACCATATAATTCTCTCAGTAAACACATAGAAAGCATTTGACAACATCCatccattatttaaaataaaacacc-----aaacagATATTTGAATAGtgatttttatctcaatcttataaa---------------------agccaagGTCAAAGTAAATAATCAAAAATTGAagtctttcactctaaaatcaggaacaagacaatgatgtgcACCATGGCTACTCACATTCATCCTATTTATGGAAACATTAgc----gcaattagacaagaaaaagaactaaaaggaata-aaataggaaaa---gaagttcatttatccttatttgtagatgacatgatctttAACATAAAAATCCCAAAagactccatcaaaagacttctttGTTTTCACCAAAAAACTTCTATatttaatagccaaattcagtagcatagctggagacaaagtcaacattcaaaagtTAATTacattcctgtacaaaaataaCAGACTTACTGACAGAGAAATTTGGGAAACAata-ctttcacaatag-catacaaaaaatgaaataactaagaaaaaatctaacaaaggaagtaaaagatttttaCGTTGAAAACTAAGGTACTCTGAAAAGAGCAACTGAAGAGgattatcagaaaatggcaaaattaggaccaggaatatagctcagtggcacaagcacctgcctggctagtgcaaggtcctgagtttgattccctgtatcctcccaaaaaataaaaaaaaagaaaatggtaagaTTTCCCTgatcttgggtaggaagaaccaatatagttaaAATGATTGTACATCTTTTTGCACAACCACCCTAGCACAAAATTGTTagacagatttaattcaatcccaatcaaaa-tctaATAGCATATGtcatagaaatagagaaaacaatcctaaaattcatttgg------aagagacctaaaatagcggAAGCAATTTTAGGCAAAaagggcaaagcaggaggcatcgcaatccctgacttgaaaatacACT-CAGAACTaccatgattaaaaaaacaatataaaacaaacagcacagcactggcagaaaaacagacccaatgATCAATGGAACTGGTTAGAAGATGCAAAATCAACACCAAAGGCGCTCAGccactt-atctttgacaagggaaCCAAATGccttcactggaataaagatagcctctttaatgaatggtgctggaaaaactggctttctatatgctgaagattaaaactagactcattTCTTTCACCAcatgctaaattaaaatcaaaatggatcaaagatc-taatattaaaatagaaaaactaaatgtTCTAGAAGGCAGAATGAATAGAACCCTTAAAGACAATTGTGTAGGCAAAGAATTTTTGAACAAAACCCCA----TTTGCACAGGAAAATCACCaaaatcaacaacttggatcttaTTG------AAAGATCTGGCACAgcaaaaaaaaactaccaacagtATGAAAAGATAACTGACagtgtggaaaaaaatttttgtcagctct-tctcagacaaaggactaatatctagaatacagaaagaac-----------aactccaaaaacaaaataaacagatgctccacatttaaagacccagtccaaaaatgggcatctgaaatgaataaatatttctcaaatatagaagtaccaatggcaaataaatatacgaaaaaatgttcaacatcactggttatttgagagacGCAACTTAAAAGAATGCT--GATTGCAttccactccagaaagaacagctattatcaagaagtcagggcctgggatttagcccagcaacacaagtgcctgcctggcaagcaagaggttgtgagttccacctctggcaaaaaaaaaaaaaaaaagtaaaagacatcaaccaataagaaatgctggaggtggggaaa-agtaacccttctccactgttggtaacagtgtagactggtgaaacca-tttggaaa-cagtgtggagattcctcaaaaacctacaACTAGAAGTCCCATTAGACCTAGCTAT---tctttttggtatcttcctgaaagaattaaaagcatcacacc-----acagtgatatatgcacatccatctttatagcagcacagtttgtaatagctaaatcttggaaacagttcaaatgcccatcaatcaatgtatggataaagaatatgtggttttttaatacagtggagtactactgaaTT-TTGCAAACactgttaaatgaatgaaat

a score=13770
s chr3            31775994 736 + 160039680 TATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGA--CAGATACCAGGTACCAAAGTTGAATCAGGATCA---AGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACC-----------CAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT------AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactt
s HiC_scaffold_1 155722854 709 - 233722169 TGTACCAAATTTATTTGGATAACCTAAATGAAATGGACAAACTCTTAGAAACAGAAAGCAG--ACCAAGAGTAACTCACAAACAGAAAATCGAGCATATGTTTAGTCTGA-ATCAGC-----AAACAAAAG----------------------CTAACAAAGTCCTGGATCTCTCGGTTTCATTAGTTAATTCTACTAACTATCCAAAGGACAT---------GTTCT---CAAACTTTCTCA-AAAACTGAAGAAGAAGGAACACTTTCTAACCCATTCTGTGAGGATAACATTAACCTGACCCCAAAACCAAACAACTACTACTATAGGTATCAGGATATGAAGAAAGCTCTGTATCAATATTCTTTACAAAAATTCACTTAAAAagtctcaacaaaatactagtaAACCAAGCTCATCAGCTTATTAAAAGGATTATAAAGCACACCTAGGTAGGTTTTTTTCCTGGAATGGAAAGATGGTTTGGGATATGAAAAATTATCAGTATGATACGCCATATAAAAA----TGAAGCTTTAAAATGTATGACCATCTCAACTGATGCAGAAAATGTATTTGACAAAGTTCAAAGccttttcatgattaaaaaaaaacactcaaaaaactagaattagaagagaactatctcaaaataat-aaggCCACGTATGAAAACTCCACAGAAAATGTTATACTTGGTGATGA-AGATTCATAGCTTTTTCTCTAAGACTAAAAACAAGGCAAAGATGTCCACTT

a score=67213
s chr3            31775994 2529 + 160039680 TATACTCAACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG-ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtca-caaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgt-aaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactgg-ttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggctt--gtactgtaagatcaa-gaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcat--tacctatcctaaatcaaataggggactaatatccaacatatataaaga------actcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctg----aggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggagg----atccagcaatacctctcctgggcatatatccagaaga-------------tgccccaacgggtaagaaggacacatgc---tccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
s HiC_scaffold_1 177567022 2468 - 233722169 tgtattctaataatatggaaaatgtggaagaaatggaca--------------tatgATTTAAAAAGTTTGAATCAACacaatataaaaatcctaaagaaaacagtatcagtcaataaaattcaagatgcaattaaaaacttatcaacagtTAAAAGCATAGGATCTGAAGAATTCACTGCTGAGTTATCCAAAAAAATTACTGGAGAATTAATACTCCCACTTCTCAAACACTTTAATAAACTTAAAGTGGGGGCAACACTcacaaaatcattcctggaagttTTCATATCCctgatacccaaaccagagaaggacccatcCCAGAAAGAGAAATTCAGGCCAATTTCACCCATGAATACAGATGTAAGAATTCTCAGTGAGACACTTGCAAACATAATGCAATAAATCATTAGgtagattatatatcatgacccaATAGAATTCATCCAAGGGATACAGAAATGCTTCCACATATAAAAATCTATATATGTAAATACCCATATTAATATaaccaaggaaaaaaaaacaaatgatcatgccaatagatgtagaaaaaacatttgatgaagtccaacagcaatgaaaaataaatatcctaCAGAACATTGGAATACAtgacctttatctcaatctgataaaagccatctataacaaaccaacagcaaacatcatgctaaatggactaaagctaaaagctttcactctaaaatcaagtaCAAGACAAGGttatccactgtctccactcttatttatCCTAGtcctggaaacactagccagataaattagacaagagaaataaatgaaaggagtaaagat------agaagaagttaaactatcattatttgtagatgacatgatcctctatatATAGTACTCCcaaaatttcatcaaaagacttccagatttaataactaaatttagtTGTATAGCTGGATAAAATGTCAGCACAaa-aaatcaatagtcttcctatacatgaataacaaactcactgagagaaatattaGGGAAACAATAGCCTTCACAAtggcaatcaaaca--atgagatacctagaaatcaatctaataaaggaagtaaaagacctctacactggAAATCTCAGGact-tgaaaaaggagattgaagagggtatcagaaaatggaaaaatattccttcttcttggataggaagaactaaaatagtgaaaaacggccatacttccaaaat--tgctatcgatttaatgcaatctcaatcaagaTCCCAACAgtatatcttacagaattagagaa---aattttgttattcatttggaaccagaagagacctagaatagcaaaggtaat--tcaaCAGTGGGAAGGcc----agggcatcacaatcctggacttgaAATCATATTAtgaaactactgtgataaaaacagaatgccactgg-ggaaaaaaagacctgaggataaACGgaacaaa----aagatac---aacaacTCCAGACTTACTTAACAaccttatttttgacaatgaTGCCAAACACCTTTACTAGAAGAAagccagtctctttaataaatgttgctggaaaacctggcttgcCAT-ATGTTAAAGATTAAAACTAGGTCCATAGCATTCAttgtacactaaactaaaatcaaaatggatcaa-gatctaaatattaaaacagaaataccaaatctgttgaaagacagaataggtagaacACTTGAAGAAATTGGTGTAGGCACAGCctctatgaacaaaaccccaattgcataGGTACTAT---CTCAAGGAATCagcaactaggatctcatctta--taaaagcttttacacagcaagagaagATACCAATggaatgaagagacaactcacacaGTGAGAGAAAATTTTGCCATCTGTTCC-------ACAAAAGGTTACTGTGAAGACTATACAAAGAATACCCACACAAAAAATCaaaccccccaaatttaaa-gttGTGAttcaaaaatgagtatctgaaatgaacagatacttatCAGATAAAGTAGAAATaccaaa--------aataatatgaaaatatgttcaacatcattggtcactcaatacatgcaaattaaa--aacactgagattctgtctcaccctCAAAGGGattgctattatcaagaaatcaaccaataacaaatgctggcagaggggtgg-gaaaaaggaaatcttctccactgttagtgggatggtagactggtgcaaccacagtggaaatcagtgtggagatttc-----------aaAACACTAAGACTGGAGGTTACATTCAGCtat---tcttcttggtatcttctcaaaaaaattaaaagcatcctaTCCTAgt----------aatacatgcatatccat--tgcttatagcagcacagtttgtaataac--aatcttgaaaacagcccaaacaTCCGCCAGTTGATGATTAGCTAAAGAAGATGTGGattattttttcactgaaatactATT---CTATCATAAAGGAC-AACTTgggacatttctagctaaatggctGCACCTTGAGGACATACTCTTaagggaaataaaccagacaca

a score=11082
s chr3           31776001 710 + 160039680 AACAAAACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGG------TACTCTAC--------------------------------CCAAC-------------TCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGA-CCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAA--CCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT------------------AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggac
s HiC_scaffold_1  6102478 682 - 233722169 aaagaaaatggagaactgaaaaggaaagaatatattCCTAGTTACAGATAAACCACCAAAGCTGAgccaagaaaatatgaaaatcttgAATAATCTAATACCAGACAGTAAAATTAAGG--------AATAAGA---CACTTAAAAAGAACCCAGGTTACAATGAATTCACTACTGAATCCTACAAAACCTTTAGAGGAGATCTAATATCAATTCTTCTCAAA--AGCtaatgaaattcaaattcaaggccagcctgcactacatagtgtaTAACTGTTTCCTACCTCAAAAAAACCAACAGTGCTCCCAAAACCATTCCTGGAAATTAGCGCTACCCTGATTCCAACACCAGAGAA----CAAACAACCAAAGAGAACTACAGGGTCAATCTCATTCATGAGCACACCATCAAAAATCCTCAgcagg------------------------------------------------------------------tcaggcatggtggcac------acatgtgcaatcccagcact------caagacacAAACAAAACTAAGGACAAAAAAGTCACATGATCGTCCCAATTGATGCAGAAAAACCCTTCGACAAACTCCAATATCCATtcgtgatttaaaaaaaaaactaaagaaaatatataaaaagatcttatctcaaaa---aaatctaaatctgataaaagctatttatgacaaatcaatagccaacaCCATACTTGACGAAAAGAAGCTGACAGTATTCC--TTTAAATCAAGAAC

a score=14942
s chr3            31776006 1308 + 160039680 AACTGGAAAACCTGGACAAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGT----TGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATC----CAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT--AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACA---TGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaag-------gctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaattt-----gcaaattcatctggaataacaaaaaacctaggatagcaaa
s HiC_scaffold_1 126531075 1214 - 233722169 AACTTgacaatttaaatgaaataagcaaatTTCTTGAAAGACACAAATTACCAAAGTGTACCGAAAAAGAAAcaggtaaagaa---aaatatatctatattagCCAAA----TAGCTTTACTGTTT--CGATATACCAATCAACTAAAT-----------AAGAAGTTAGTATA------TATCAAA-------------------------TCTACACAAATTCTTCTAGAAAAttgaaa-aggataaaatatatCCCATATATTTCATTAGGCTGGCCTTACTCTGATATTAAGACTAGAAAAATGCACTTCAAGGAGAGAAGACTACAGACAAGTATCTCTCATGAACATAATTGAAAAAATTCTACTTGAAATTT------ATCAAATCAGATCAATAAGAGGCAAAGAGAATAATGTGTCATGAGTAATTATGGCTTGTCTTGTGAGTACAAAGTAGATTTAACA-ATGTGAACCAATCAC--TAATACATTATA-----AggctaaaaatgaaaaaccatgTGACAATctcaatatatataaaaaaagcaTTTCATAAAATCTAGCCTCTATTCCTGATTCAAACTTCTCAGCAAACCAAG---TGAAGG---GAACTTCAACAAGttgataaaaatcattttc--ccAACACACAGTTAACAT-------AATCGTGAAAGACTGAACACTTTTCTCTTACGATT-GAGAAAAGACCAATAGATCTACTCATCATTTTCTGTCTATATTTT-ATTAGAGGTCTTGCACAATAAATAAG--------GCTAGAAACAGTAGGAAAGAGCCATCCAGACTAGAAAGCAAGAAGTGAAATTGTCTTgtttcacagatgacatgattatttatgtagaaaatcct----atgtaatgaaaaaaatagaatac---attagTGGGTTTTACAAGGTGGAAACATGAAAACTCTATATACAATAATCAATA---TTTCCATATACTGGAAATGAATTGCAggaaattaaaatactaaaaaattcaTAGTTTACAATAGCATCACGAAATATAG-----TTTGCTATCAACTTTACAA---AAATGTGAGACTTGTACACTTGAAACTATAAAACATTAGTGAGAAGTTGTACACTAGACTTAAGTAAACAGAGAAGTATACCATATTCGTAAGTTTGCACAcacaatattgttaaaatgctAGTTTTCCCAGA--------ATGGTTTGAACACAATTTCAATCAAAAATCTCACcaggctttaaaaaaaact--gatgaGTTATATATGAAGCAAATATCGATGGAAAGCTAAAAGAACTAGGAaggtaaa

a score=13580
s chr3            31776023 685 + 160039680 AAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAAT-CAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAA-GCCACTATTATTCTGATACCTAAACCACAGAAAGACCCA---------------ACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATA-------------AAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagca-atcccactaaaatcagg
s HiC_scaffold_1 131360116 686 - 233722169 AAAATGGATGTGTTTCCTGAGAGATACAAGCTACCAAAactcactgaagaaaaaaatagataatttgaATAGCACTGTGTG--TTAAAGAAATTGAATGTGCAGTTAAAAACTTTCCCAAAATGAAAAATCTAGACCCCGAAGGCTTCATTAGTGAATTATACCATACATTTAA-GAGGAAATAACACCAATTCTACACAAATACCTCCAGAGCATTGAAGAAGAGATAATACTTCCAATCTCATTTTATTCGTACCTGCATTATCCTGATAACAAAATCAGACAAAGACatagggggagagagagagacagagagagagagcatatAACCAACCACT-----AAACATGAATG---AAAtgct---taaaagttttaaaatttatatctatGA-CATATTAAAAGGATGATAAATTGTGACCTA-TGGTATTTTTCCCACATATGCAAGTTTGACTTGAAATGTGAAAACCAAACAATGTGATTCACCGTATCAATAGACTAAAAGAGAAAACCCACATGATCATCCAAATAGATGTAGAAATCGCATTAAACAAAATCTGACATCTATTCTGGATAtgtaaagaaaatcaataaattagGAAGAAAACAATTT----------CTTAAACCTGATAAGAAACATCTTTGAAAAAAT----GCTAATATCATACTTACTGGTAATAGACCAAATATATTTTCCCCTAATGTCAGG

a score=11181
s chr3            31776024 535 + 160039680 AAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAATCTCC--------CAGCCAAAA---AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAA-ATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCG---TTAGATGCAGAAAAAGCATTTGA
s HiC_scaffold_1 198166623 526 - 233722169 AGATGAAATAAATTCCTGAAACACAAAACCTACCAAgactaaattttaaagaa-tagaatatttaaataGACCAATAATAAGTAAGGACATTGAATCAGTAATTTTAAATCTCCAGACAAATCAGTCAAAATTTCTTGGCAAACACCAGATGACTTCCCTGGTAAATTCTgccaaacatttaaataaa---tatctcCAAATTATTTCAAACTTTTCCAAAAACACTGACCAGGAAGGAACACTTCTTTACTCACTCCATGAGGCCAGCGTTACCCTAACACCAAAGCCA----AAGACTC--CAAAACCAGAGA--------CCAAAG-CTTTTATGGAAGTTGATGCAAAAATGCCCAACAAAATGTTAGCAAGTTGAGTTCAGCCATGCAGTACAAGGCTCACCCATTATGGCTAAGTGGCATTTACTGGTGGAATGTAGGGGTGGTTTGACATACAAAACTCAATCGATGTAACACAGCATACTAGCAGTATGAAGGAGGAGA-----GTGATCATCTCATTTTttgatgcagaaaaatcatttga

a score=26435
s chr3           31776034 2496 + 160039680 ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACACTCCCATATCACCTAAAGAAATAGAAGTACTTATTAATAA----TCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTA----GAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCA--GACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGT------------------------------------------AGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATC-CAACACCCATTCATGATAAAGGTTTTGGAAA------------------------------------GATAG--------------------------------------------------------------------------------GAATTCAAGGCCCAT---------------------------------------------------------------------------------------------------------------------------------------------------------ACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgt-----------------------------------------------------------------------------------------aaaaatggctatc----ttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattctt-------caacgaa-------------ttaga---------aggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct---caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaac--tgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagagg----------agaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacag-----aacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaa---gtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatccta--aatcaaataggggactaatatccaacatatataaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaatac---cgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacacc----------------------------------------------------------------------------------agtcagaatggctaagatcaaaacttcaggtgacag---------------------------cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatc-cagaagatg------ccccaacgggtaagaaggacacatgctcca--ctatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtgg--tacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcacaaagaaac
s HiC_scaffold_1 66219401 2910 - 233722169 ATTTTTAGAAACATACACCCTACAAAGACTGAATCAGGG---AGTAGAAAATCTGAACTGTCTAATAATAAGTAAG---ATTGAACTGAACAGTAATAAAAAGTTTCCCATCAGTGAAAGGCCCGGAACTTG--TGACTTTATTCTTTACCCTACTAAACATTTAAAGAAG------TACCACTTCTTCTTAAAATCTtccaaaaaagataattaaagagAGGATACT-TAACAAGTATATTTTATATGAGCAATATCACCCC-ATACAAAAACCATCTAAGAACACTACAAAAA-AGAATACTGTATAAAACCGTGTCTCtgatgagcatagatgcaaaacttTT-GCCAGAATACTACCAAACTAAATTTAGCAgcataataaaaataccattcacTGAGAACAGGTGGGATTTATCCCTGAGATGCAAGGATTTATCCCTGAGATGCAAGGATTTATCCctgagatgcaaggatggttcagtaTACATAAATCAACAAATATGATACTCTATATTCACAAAATTAAGGACAAAAACCTATATATCATCTGAATAGATGTGGAAAAAGAATATGACAAAATCTTAACATCTTTTCTTGGTGAAGAGTCCAAAAAATTGCATGTATAAAGAATGTACCTCATGCTGGGTATGATAGTatacacttgcaatcctagcacttaggagagtgaggcaggataatcattgcgagtttgaaatcagcctggactacaaagtgaactcaagtccagcctaaactgatTACtggttagtgatttttttttgtctcaaaaagacaaaaaaaaaatagaggatttagctcagcggtgtgaagtgcctgcctggtaagtgcaaggtcgtgagtttaatccccagtacctaaaaacaaaacaaaacaaaacaacaacctgAACACCATAAAGGCTGTATATGACAAATGCATAACTGATACC--AGTTAATGGGGAAAAGTTGAaagcttttctttcatgatcagtaAT---ACAA---TATCTGATCCCATCAGTCACGTTGCCCATAGTG-TTGAAGGCTTAAT--GTGCAgtgaggcaagaaaaagaaataataggcagcta------aaaacaagaaatgaa------actgTCTGCTGAGgacattatattatata----------tgaaaacTC-------AATCtattaaaattgataaa----tttagtAAAGTTAAAGGATACAAACAGTAC----AAAAATTAATA--CCTTTTCTATACATTGACAGGAAATTCTGAAAAAG--ATTAAGAGCACTTTAATTTACTGTAATCTcacaagaaatattaaat------------------ttaaggAGGTAAAAAATCTGTATACTAAATATTATAAACTATTGATTAAATAAATTggggaagataaaaataaatggaaagatatctcatGCTAATGGACTGGAAGAATTAATGTTGCAGACCTagggactgaggatgtagctcagtgacacaagtccctgcccggcaagtgcaaggtcctgagtttaattcccagtatataaaaaaaaaaaagactattcaGACTACTCAAAGCAGATTACAAATTCAATGTAATCATTGTCAAAGTTCTA----AATTTTTTTGCAGGCagagaaaatatctgaaattttaaaactttgtttagAAAATATCCTAAAATTGATATGAAACTGT-AGAGATCTTGCATAAGTAAAGTGGTTTTGAGCAAAAGTAACAAAA---CTGGAGGTATCATACTCCCTGATTTCAATATACTTTACAAAGGTGTTATAATCAAAACATTGATTGACATTGG--------------------CCAGTGGGACAGGATAGAAAACCTAGAAATAAACCCA-GTGTTTATGACCAGGTGGcttttgacaaaggtgtcaaga-CACACAGTGGGGAAAGGATa-ctttttcaataaatgatgctgcTAGAACTGACTATCTGCATATATAAGAATGC-ATTGGATCCTTATTTCACatcacatacaaaaatcaatacaaaatatattatgaactTACACAGAAAACCTGAAACTATGAAattactaaaagaaaagaaaaaagaaggagggGGAACTCCATAGTAAT---GGCCTACAAAATTATTTTGTGCATAGATCCCAAAAGCAAAGG------CAGTAAAAGCAAGAATAAGTGAATGATATTGCATCAAACTAAAAGCCTTTCTCTGCGTAGCAAAGAa----agcaacagaatgaagagacagcc-aCAGAGTGG--AAGAATTATTTGCAACAATATCACTAAAAT---GGGCTAATACTCAAAATATGTAAGTTGCTC-AGTAGCTAGA------------AAATATGTGATTTAAAAAGTGGGCAAATGACCTGAACTGACATTTTTTA---GAAGAACACGTACAAGTGACCAACAGATAac-gaaaagatgctcaacatttctaaacatcagagaaatgcaaattaaaattgtaATAAGATATTACCTCATGACTGCTATTCCTTTTATTAGAAAGACGAAAGTAGCCAGGTGGATGCTGGTGGATACCTAGAGAAGCGGTGACTCAGGAAGCTAGAGccaggaaatttaaaaccaa---CTTGGGCAACAGAGTGAGACCCCATttcagaacaacaaaaaaatgtgaaaagataaGTGGAGAAATTGAgactcttttgcactgttggtgggaatgtaaaatgttgCAGCTTTTATGGAAaacagtgtgaagattcctccaaaattaaaaacaagaattagCATTTGATCCAGTTGTCTCACTACTAGATATATATCTCAGGAAGGGAATTGAAATCAATATGT--GATGGATATATCTACCATCCCACGTTCATTGAAGCATTATTCGCAGTAGCAAGATAC-GGAAACAGTTTAG-tg-ccatcagtggatgaatggaacAAGAAAAATCTGTCTGTATATATGCAGTGGAGTACAACACAGGTTTCAGAAGGAAAA----TATGTCATTTAAAAGAGCGTATATGAGCCTGGA-GGCATGATGTTAAGCCAGG---------CACAAAGAGAC

a score=20767
s chr3            31776106 1125 + 160039680 TAAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTG--------CAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAA--TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAG-AGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGA-TGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAA-------ACCAGTAGCCAACATCAaagtaaatggagagaagctggaa-gcaatcccactaaaatcagggactagacaaggctgcccactttctccctacctt-ttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataa-aataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatc
s HiC_scaffold_1 102385426 1281 - 233722169 taaaaatagaaaagaaaagaaaaaaatcctcccATCAAAGAATAGCCCTGGACTAGATGGCTTCATTATTTCACTACTGAGATCTTTCAAAC-TTGTACCAAGAACTAatatcatttctgcttttataaTTCCAAAAGAACTTGAAGAGGATGGACTTCTTCCCAACACATTCTATGAGGCCAGTATTACCCCAATATCAGAATCAGACAAGGACATAACGAAGAAAACAGAGCTGTGGATCAGTatctttaatgaacataaacCCAAAACTCCTTACCAAATTACTagcaaacaaaatccaacatcaaattaaaaaagagtATTCAAACTGgggatagtggtacacacctgtgccCATAATTCCAGCGTTCagagggctggggcaggaggattgttgtgagtttgagaccagcctgggctacaaagtgagtgcaaggcaaacctgaactgcatagcacaaCCCTgttgcaaaagaatgaaaaaaaattattcaccATGATCAAATGGGACTCATCTCAAAGATATAAAGAGcacttcaatatacataaatcaataagcgTGACATAATACACCACCATAAATAATAAC--AAACCTTATAATCATATGAATAAATGCAGAAAAGGcactttataaaatttaatatct-ttCATGATAAAAGATT---AGATATAG------AATGACCAAGTCTCAA-ATAATAAAGGTCATATGTAACAATAGCAAGAGCAATACCAAGCATCATACCGAATAGGGGAAAGctgacatttttttcctctgagatgTGGAATGAGACAAATTTGCTCACTTTCACCATTTTTTATTCAACATTGTACTAGAGGTAGCAGGTGGAGCAGTCAGGCAAGAAAAATATACTAAGAGCATCTAAAttggaaaa---gaagtcaaattgtCACTGCTTGCAGAAAACATGATCTTACATGTAGAAAATGCCCAAA--CCCACC--AAAACTACTAGAATTAATGAGTGAATTTAGCAAAGTTACATGATAGAACAATGAATGtgcaaaaatcaatatcattggTATATATTActaatgaat-ttttaaactaGAAGTCAAGAAAGCTATTCCATTTATAATAGCCATAAGTATTTTTATACA----GGGATAAATTTATCACAG---ATGAAAGATTTCTGtaatgaaaac--caaaatgttgatgagagaaacagaaaaagct-ggAAAATATGGAAAGCCATCCTGTGTTCCTGGGTGAGAAGAATCAATGTTGT--CAATGTCCTTACTACCCAAGGCAGCTTAGAGAGCTAATGAAACCCATGTC

a score=40741
s chr3            31776107 2352 + 160039680 AAAGAAATAGAAGTACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGT---TCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACA--GCAAACCAGTAGCCAACATCAaagt-aaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaac-------agcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatgg----------------------------------------ctatcttgc-----------------------------------------------------------caaaagcattctacagattca-----------------atgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtga-------taaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagc-taaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaa--ggatcattacctatcctaaa------tcaaataggggactaatatc-------caacatata-----------taaagaactcaagaaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctcca--ttgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaac---gggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccag-atgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaattta
s HiC_scaffold_1 150617876 2397 - 233722169 AAACTAATAAGAAGACGAAAAAACAAGCTACCAACTTAGAAAATCCTAAGACTCAATGAATTCACTGCCAGTTTTTACAAGACTAT-GGGCTAGATGTAATGCCAATGCATCTg-----agtttttaatgaaattgaaagggaatgaATCCTCTCAAAATCATTCATTGAAGTAACCATCACCAttatttcaaaaccagatgacTACTCAACCAGAA--GGGAATTATAGGCCAGTGTCT----------TCAATGCAGAAaccctcaacaagatactggccaacagaatgcataaaatcatttaaa-aatcatatataatgATTAAGTAGTCTTTATTCTAGTGATGTAGGGATGTCTCAGCATGTGGAAATTAACAAGTGCAATCCATCTCAGAACCAGAACCAAGAACAAAAAATAGATTATCATCTTAGTGGACCCAGAAAAAGTCTTTGACATAATCCAAAATTTATttatgacaaaaatttt-aaaaaatagg--tttaATAAGCTTAGttcaatatta-aaaatcaatttatgaTGCTTACCA----CAATCATTATATTAAAAAGGGGAGAAGTTGAAAGATTTCCTTTTAACATCAAGa---agacaaggatattcac-taCAATATTCCTGATAAATAAAACACTCAAAACATTAGTTAGcacaat--aaagataaaaagaaaataaatatatgtgaatCAAAAAGG--------TAATTATTTTTACTCACAGATGATGTTATATTCTATATAGAATaccccaagatttctacca-aaAACTAccagaattaataactaaattcaaaattcagcagtgtagctggaaacAAAATCAACACATATTAG----------TTTGATACACAAATAATAAGcccaatgagaaagaaattaggaaagtaATACTATTTATAGTAGcatctataaaaattaaatacctaagaATTAACATAacc-aggaagtgaaagacctctacagcaATAATTATAGTTCTcttaaaaaggatattgaagaacacataagaaaatggaaagatacctcaT--TTCTGGA-TAGCAGAaccaatataataaaaatggacatactggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcatgagttcgatccccggtaccgataaaaatgaaaaagaccaaaaaaaaaaaaaaaatggacacacTTAAAAAATATTAGTCATACACATAATCCCAGGCAAAATAGCAATAGCCTTCCCCCA-GGACTATAGAAAACAATCTA-GAATTCATATAAAGATATAAGAGAACTAGAGgagcaaaggaaattctgagcAACATGGgtaaggcaa-------gagaatcacaatgTCACACTTCAAGTTTCATTACAATGCTATAAACAGgacatttgaaaacagaatggttctggcaaataaataaataaataaacttacgGA----TATTCAGGA---GGAATAAAGTTTGCAGACACACAGCCATCTAATCATTGGCAAAGTGGTAAAAAAATATACACTAAAGGAAAGATAGCCTGATTAGCAAATAATTCTGGAAAACCTGGCTATCAACATACAGAAGAATGAGCTGAGGACCATATTTCTAACTAACCACTaaccaaaagtaaaaatggatccaa-------atgttaaaacagaaacacttaagaTGATTGAGGATAGAATTGGTAATACTATTGAAGACATAAGTGCTAGCATGAACTTTCTGAATTGAactccaattgc-------------acaagaa---ataaattaagaactattaaattaaaaagcttctttacAGTGAAGGAAACTATCAATAGAATGGAA--ACTATCAATAGAACGGAAAGACAGTCTACCATTTTTTCCAGGCATTCCTTGGACAGAAGACTAATGTCTATTCTACAGCATgtaagagcaaaaacaaaacaaagcaaaaatacaagactcacaaA--TAGAAGACCACATCAAAGAATGGG-----CAATTGAATAGACACTGCTTACAAAAAGAATTGCAAATGAC------CCACATTAAAAAGTGTTT----TCATTAATGACCATT----TGAAAGTTCAAACAACAGAAAGACTCCATCTCATTCTGCAAAGagtggttatcatcaagaaataagat-ATAACAAGTGGTGGTAGAGCTTTAGGAAAA----AACGCTCATctactttgttggtggaaatgtaag-taGTAAAACAATAggggaaattagtatggagattcctcagactactaaaactagaaatgtcag-----ctagaaattccatttctagttatcatcccaaaagagttaaagacattatattacagtgatacatgcactcCAATATTTAGTGCAGTACAACTCATGATAACTAAATCTTTGAGTGGCCCATGTAGGTCTATTAACAgtggaatggata-agaaaatgtgatatttacacaaaaTTTAGTATTATTCCGCtctaaagaaggatacattta

a score=12199
s chr3            31776121 555 + 160039680 ACTTATTAATAATCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCA--------GAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCAC-TATTATTCTGATACCTAAACCACAGAAAGACCCAA-CAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAA--------------------------------------------------------TCCATTATATAAACA-AACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatgga
s HiC_scaffold_1 109410536 603 - 233722169 ACTAACTAAACAAATACCAACCAAGGAAAGC--AGGAACTGGGGTTCCTGCTGCATTACCATTGAATTTTATAAGATAGTCAGTGGTGTTTAAATGGCAGTAATCCTGAATCCATTTAATGAATTAAAAGAGGA--GTATTT--CCAATCTCATTCATGGAAGCTAAACATTACtttgatttcaaaaccagacaaggattcAAGTAAAAAAAGTGAATTATAGACCAATTTCTTTAATCAACATGAAgtgaaaaatcctcaataagatactgactGATATAAC---AAGATATATCAAGAAGATCACACATCTTGACCAAGTTGGATTTATTCCACAGATGCAAGAGTGGCTAAATATTCAGAAATCAGTCAATATAACAAAAATTGCTTTTAGCTCTTTTGGATAAAATCAAGTGATGTAACAGTAAATGTGCTACATCACATAAGCAGAAATCAGAATGAAAAATCACACAATTATCCCTTTAAATACAGAGAAACCCTTtcacaaaatccaacattcattaaTGTTGAAACCTAAAGAAAGTAAGTTATTAAA---TCTTATCT----ATTAT-AAagtttttcacagcaag--agaaaccactaaaagagtgaagaga

a score=10062
s chr3            31776136 447 + 160039680 CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAAT-GTAATCCATTATATAAAC-AAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT
s HiC_scaffold_1 222209385 430 - 233722169 CTTAACCAAGAGAACCCAAAAA---------TTCACTACTGAATT-TATCAGCAATTTAG-GAATAAGTAAACTCAATACTCCTCAAAGTCTGCCAGAAAATTGCAAGGGAAGAAATACTACCAACCACATTCATCAGAGACAA-GTTACCATGATACCAAAACTGGAAaaggactcaaccaaaa----aaacTACAAATCAGCATTTTTACTGAATCTGGATACACAAATTCTCAACGGAATACTTGGAAGCAGGATGCAGCAAACCATTCAAAAGGTCATACATCTTGACCAAGTCAGCCTTGTCCTACATATGTAAGAATGACACAatatacataaaacaataaataaaaaaatattacatacatGAAATgtaaggataaaaatcacatagTCACCTCAATAAATGTGGAACAAA-ACTTGAC--TATTCAACATACattcaggat

a score=5827
s chr3           31776136 224 + 160039680 CCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATG
s HiC_scaffold_1  1869309 213 - 233722169 CCCAAACATCAACACCACAGACTCAGACAGTTTTATAGACAACTTTTATGAAGGTTTCAAGGAACACAAAAGCCCTGTCTTACACAAACTGTTCCAAAGAATAGTAACAGAAGGAATTCTCCCAACCTCGTTTTATGAGGCTAGGATGACCTCGATTCC-----------AGTACGCCACCACCATGGAAAACCATAGACAGATTTCACTCGTTAGCACAGACG

a score=17739
s chr3           31776146 1188 + 160039680 AAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAAT--TTCT-CTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAAT---CATCCA------------TCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAA-GCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct----caaggataaaa
s HiC_scaffold_1 74183501 1154 - 233722169 AAATCCCCAAGCTCAGTTAATTTTCCTGAagaattctaccaaacatttaatGAAGAACTAACTCACGTTCAACACAATTTCTTccataaagtaaaacaaataagaacacT-TCAAATGTATTTTGTGAAGCTAGTGTTACTTTCCTAACAAAACCAAAG-----CTGTACAAAAA-AGAAGACTATAGACAAATAGTGCTGCTTATTTATACAAATGTCAAATTCCTTAA-AATGTATTAGTAGATAGAACTTAGCAATGTATTAAATGACTGTacaccaagtaggatttatttcaAGACCAAGCAGGATTTATTTCAGACATACAAGGCTTATTTAATAATCAAAAATCGATCAGTGTAATCTACCATTTTAACGggtt--aagggaaaaataatgtGCTTATGT-----GAGGCAGAAAAAGGCATTTGAAGAAATCCATTACCCATTCAT--TAAAACACTGAGGAAAACAGGAATAGATGGGAAAGTCCTCAGCTTGACAAAGAC-TTCTACAGGAAACCTGCTGCTAACATTGTGCTTAACAGTGAAAGACTG-----AGTTTCCTCGAAGACTGGGA--AAACCAGGATGTTTGCTCCATTATT-CTTATTCAGCACAGGGCTGGATTAATGCTTCAGTATaat-----aataaaacaagac------------aatcagaagtacagaaagaaaactgaCGCTGGTTTTAGATGACATAATTGTTTATATAGAAAACCCCAAGCAATCTACCA-AAAACTGCTGGAACTAATAAGTGTGTTCAGCAGAGT--CAGGTCACAGGGCAAAGT---AGGGACGAATCTCACTTCTGTGTACTAGCAATGGCCACGTggacaccaaaaattaaaatgcaagccATTCAAAAAttgctcaaaaca--aaaaaatacttcgGTA-GAATCTAACAGGAGATATACAGGGTTTATGTG-TGTCAGGTATAACATGCTGAAGAAAGCAATCAACGAC-ATCTAAATAAGTAAGGGAATAGGCCGTGTTCATATTTCAGAAGACGGAACATAATAAAGGTGTAAATTCACCTCAAATTGaaatacaggtttaatgcaattttTATCTTAATCCCCAAAAGATTTTTTCTAGATatagacaaaaaatttt---aaattatatccaaagactaaaaaactaaaatagtttaaatttttttgtgaaaaaaataaaa

a score=67312
s chr3            31776175 2348 + 160039680 AGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAA-AAAGCATTTGACAAGATCCAACACCCATTCATGAT----------AAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatgga-----aagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaac-tcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagc--tttactacagagcaattgtgataaaaactgcatggtactggta------tagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactcc---aaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaaggtgga----cttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatc-cttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtgg-agaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctggg-catatatccagaag-------------atgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaa--cacattcaca
s HiC_scaffold_1 229303709 2256 - 233722169 aaaattctacagtaaGTTCAGGGAA---CCAATGCCACTGATTC-TAGACTCTTTAAACAAGCTGAAGGGGAATCAGTACTTCCAAAACCATTTCTGGAAGCAACTattat--------caaaaccagagaagaacccaaccaGCAAAGAAAACTGCATACCAATCTCCCTCATGAATATAGATATAAAACTCCTCAGTAACATACTGGCAAACCAAAAttcagcaaatcaccaag--attatacaccatgaccaagtagaattcatcctagggatgcagggCAGGTTAAACGTatagaaaacaataaagataatacaccatattaacataaacaaagacaaaaatcataaggCTATCTTAATAGATGTAAAATAgtgcatttgacaaagtccaaca-ccattcatgattagaaaaaaaaaaaactccagaaaact-ggaatagatggtctatatctcaatctaataaaaatcatctatgataaaccaacagtt------------------------cttga--ctttcactttaaaattagaaacaacacaaggatgtctactatcacaaTTCCTACTttatataattctggaaacatt----agagcaactagacaagagaaaga----aaaagaataagggtatgaaagaaagaagttaaattatcattatttgtggatgacatgatattctacatagaagaccccaaaatctctaCTAAATGACTCCTA-------------------GTAGTGTAGTTGAatataaagtcaacattcaaaattcAGTAGCATTACTGTACACAAGCGACAAACTCATTTAGAAAG-AATCAGGGAAACCATACCCTTTACAATagcttccaa-aaaatgaaatacttaggaatcagtctaacaaaggaagtaaaagatctatatgatgaaaattacactacatgaaaaaaggaaattgaagaggatatcagaaaatggaatgataagataccccttgctcatagatagggaTAACCAGCATagtaaaaatggtcatactcccaaaattgttgtacaaATTTAATGC-ATCCTAATCCAAATACCATTATTAAaaactcacagaactagagaaaac--------aatccattTGGAAATGgagaagacctagaatagcaaaagcaattctgggcaacaaaggcaaatcag--GGCATCACactccctgacttgaaatcatttac-----------tgtggtaaaatcagcatagtactgaaaaaaaagaaaaaacagatctgatggtcagtggaacagattagaagatgcaggtgCAACCTCAAACACACTCACCCActctatctttgacaaaggaaccaaa--cattctctggaagaaagatagtatctttaataaatgatgctggaataactggctttccacatgtcagaGACTAAAATTGggtccatgtctatcaccacgtactaaattaaagtcaaaatgaatcaaaaatataaaaattaaaacaggaatactaaatttattggaagagaaGATAgatagaaatattgaagacacaggtgtatgCAGAGACTTCTTGAACAAAACTCAGATTGCACGGGAAGTACTACAAAGAAtgaac---tgggatctcat----cttttaaaaagctgttgcacagcaaaagaaataacaaatacagtgaaaagacaacccacaggttgggaaaaaatt-tagccagttgTCCATCAAACA-AGGActtttatgtagaatatatacagaattgaaaaaatcagataccctacccaaattcaaagg--cccaatccaaaatgagcctctgagatgaatacaca--tctcatatgaagaaatacaaacagcaaataaatatatgaaaaaacatttgacaTCATTTTGTCATTAGAgacacacaaattaaaacaacactgagattccatctcacattagaaagaatggttatcatcaagaaatcaaccaataagaaatgctgcaAGGGATGTggtggaaaaagaaacccttctccactgttggcgggagtatggactggtgcagccactgtagaaatcagtatggagagtcatcaaaaagc------taggattacagg---------------ttccTTTGAACCAGGTATCCAGAGGAATTAAGAATATCATATctcaat----------gatatatgtgcactcatgtttatagcagcacaatttgtattagctaaTTCTCGGAAATAACTCAAacgcccatcaaccaaagaatggataaaacagatgtggtatttttatacaatggagtattactcaggcAT---AAAAgacaaacttgagacatttataggtaaatggatacaactggagaCCCTActtatgaatgaaataaatcagattcccA

a score=13025
s chr3            31776177 430 + 160039680 AGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGAC-AAGATCCAACACCCATTCATGATAAAGGTTTTGG-------AAAGATAGGAATT
s HiC_scaffold_1 218541252 420 - 233722169 AATCCTGCCAAACATATAAAGAAGAATTAATATCAATGCTTCACAAACCCCTTCCAAAAATAGgaataa----tatttt--ccattttatcctaTAAGATTGATATCACTTTGATAACAAAAGTAGACCAAAACATTACACaaa--aaaaactacagaccaatatccctTGTAAATATGGATGTAAAA----TCCACTAAATATTAGC-----AAGTCCAGCAACATAACAAacagattatataccatgaccaacttAA-TTTATTCCAGAAACGCAAGGTTGGCTTAATATATGTGAATTAGTCATCATAACATACCCTATTTGTAGCATCAAAGACAGAAACCATACAATCATCTCCGTAGATTCAAACTAAGCATTTGACAAAAATCCAACTCCCTTTTGTGATAAAAACATTTGTCAACATAAGAATAGGAATT

a score=8413
s chr3            31776185 364 + 160039680 CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATC-------CATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT---TAGATGCAGAAA
s HiC_scaffold_1 190143545 328 - 233722169 CACACATTCAAGCAATAAATTACACCACTTTTATATAATCTATTACAGAAGATAGAGACAAAGAAGACTT--CCTAACAGACTTTTTGG-GCTAATAGtgct----------------agaaa--------------agaaaagaacagactAATCTCTC--ATGAGTTTAGATGCAAGAGTCCTCCATAAAATACTAACAAACTGAATCCGACAGTGTATAACAAGAATTATATGTCATGGCCAAGTGGGCTTTATCCCAGGCATACGTAGTTGG-TTAATGTTTAAAAACCAGTTAGTGAAATCTGAGCATCATTATCAACACAAAC----------AAATCACTTGATCACATCAGGCATAGATGCTGAAA

a score=8716
s chr3           31776204 273 + 160039680 TAATTCCAGTTCTGCAC----AAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAAT
s HiC_scaffold_1 32374808 272 - 233722169 TGACTTTATTTCTTCACTTAAAAATCATTTCC-----TAGAAAGGGAAACAAGGCTTCCAAACTTCCTGTATGAGTTCAGTGTCCTCCTGATACCCAAAATGGACAAGGacacaatcaaaaaagaaaattacagaccaaCATCCCTGATGAACATAGAGGGAGAAATCCTTACCAAAACACTGGCAAACTGAATTCCACAATACATAAAAAAGATCACATGCCATGGTCAAATAGACTTCATTCCCGGGCTGTGAGGGTGATTCAGTACACGCATAT

a score=8941
s chr3            31776215 317 + 160039680 CTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGACCCAAC----AAAGATAGAGAACTT-------CAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT
s HiC_scaffold_1 125614813 328 - 233722169 ctcctcaaattcttcagtgaaactgaaagggatgGAATATTTCCAAACTCATTAATGGAATCCAGCATCACTCTAATACCAAAAACAGATAAAGACCgaaatataaaagatataaaatataaaaatacaagccAGTCTCCATAATGAACATTTATGCAAAATTCCTCTACAACATATTAGCAAAGAAAATGCTACACATCATCAAAGGGATAATACATTATTACCATTTAGGTTTCATTTCAGAGATGCAAAAGTGGGTCagtatacacaaataaataagttTAACACATCAAATACACTgaagaagagacaaaaaacatatgattat

a score=7675
s chr3            31776240 463 + 160039680 AAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTATTCTGATACCTAAACCACAGAAAGAC-CCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAA------------AATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAA-AGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaa
s HiC_scaffold_1 178899408 450 - 233722169 aaagaaaaggaaagctccttgattctttttat-atGTTAGTATAATTCTAATACTGAAAGTCGATCAATATactaggaaaaatggaaaaaatcctATAATTTTCT---ATGCAAATATGATAGAAATTTTTTTATAGCATATAGCAATTGATTCTGGCT--CTGTGTTAAAAAGAATAGTA----------------TGACCTAGTGGG-TTTATTCTAAGACCATGAGGAAGGTTCACTATTAGAAAATCTATCAATGTAATTTATTATATCAACAAATTACATGAAGAAAGCCA-ATGATTATATCAATAGTTGCCTGAAAGGCATC--ATAAAATCCAAAAGTCCTTCCCCATAAAAATCCAAGTAAGTTATAAA-TAAAGGAAACTATTTAAATATGATAGATCTTTTTCTATTCAAACTCAGTAGCAAACAGTGTAATAAACTGTGACACACTAAAATTATTTACACTAAAA

a score=12464
s chr3            31776281 472 + 160039680 ATTATTCTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAAT-----------GTAATCCATTA------TATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaa-tggagagaagctggaagcaatcccactaaaatcagggactagac-aaggctgcccactttctccctaccttttcaacatagt
s HiC_scaffold_1 143016781 488 - 233722169 ATttccctgatatcaaaaccagaaaaggactcaATCAAAAAAGAGTAATATAAATGACCATC-CTCATGAATATCGGTGCAAAAATATTcattaagatactggcaaacagagtaTAGTAAATGATCTAGATTATT-TTGACCATAATCAAGTAGCTCTCGTATCAGTGATGCAGCAATGGTTCAatgtacacaaatcaataaattatcAATAAATGTGGTGTATTAACACCACATTAACAGATTCAAG--TCAGAACTACATGATTATCTCCAAAGATACAGAACACACATTTGACAAAGCCCAACAATAATTCATGAAAAAAGTCCTATAGAAAATTATaacagatggcctttatctcaatctgattaaaGCCATCAATGACAAATAAACAGTTAATATTATATCAAAGtgtcaaaaaactgaaagctttctctgtaATTTCAGGAATAAGATAAAGGGTGTCTGTTGTTTCCAATCCTATTCATTATAGT

a score=11536
s chr3            31776310 807 + 160039680 CCCAACAAAGATAGAGAACTTCAGA--CCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTT-TTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctacctt--ttcaacatagtacttgaagtattagcc--------------------------------agagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatat---aaaataccttggcgt-gactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaatt
s HiC_scaffold_1 149604855 784 - 233722169 cccaaaaaaagaaaagaaaaccagcatCCCATATCGCAAATGAAAATAGATATAAAG-TCCTCAGTGAAATACTAACAAACTAAATTCAACTGCTTAGTCAAAGAATTATTCACTATGACCAGGTTAGATTTATTTCTGGGACATAAGAATGGCTCATAACATACAAATAAATCAGTGTAACAC---ATATTAATAG----AAAGATAAAACCCACATGAGAATAGCAACATTTGCA-CAagatcatttgaaaatttttgatATCCAGTTGCAATAAAAACTATTTATAAATTAGGAATAGAAAGAGCTTTTGTTATCA---------CAACTGAGATCACAAGAAAAGCCAAACGCACCAT-AATTGATACAAGTTGAGAGATTTTCCTCTAAGACCTAGTACAGAATGAAGAGGTCC---CTCTTGCTACCTTTATTCATCATAATAATAGGTATCTTGGGTaaagaaattatacaaaaataaaaaaagaaaagaaagaaattagacaagaaaaagaagt-aaaagtatccaaattaaaaaggaagaaataaaatgatc----tcTGCAGATCACATGGTAGAA---------AACTTTAGAGattcaataacaaaaaaattgaa----ataagtaaattcagtaaaatTACAGGATACCA-------------AAATCAGTAGTATTTCTCTATACTAACAATAAATtatatcaaaagaaaactaagaaaata------tttattgtagtatcaagaaaaataggaaaatacatAAGCATAGActttattt----gattaaaataatcatgcaat-gaaattagaaaacattgaagaaatgactt

a score=30583
s chr3            31776322 1150 + 160039680 AGAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGT-TTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATC---TACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaa-atatcactttttgcagatgatatgatagtatatata-agtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcac--------aaataatat-------aaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaa-acttcaaatctctgaagaaagaaattaaagaagatctc----agaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctag------gatagcaa-----------------------aaactcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagct-ttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacaca
s HiC_scaffold_1 133462360 1175 - 233722169 AGAAAACTATAGGTCAATATCCTTGATAAATATAGATGGAAAAACTGTCAACAAAATACAAGCAAACTCAATATAAGAATGCATTAAGATTTTTCCCCATCCt---caagtggtattcatcccagggatgcaagagtGATTcgacatacacaaatcagtaaacatgctataccacatcaacaaaatgaagaac-aaaaccatgtgatcatctcaaaagatggaGAAAAGGTATTTGATAA---TCAATATCCCTTCATTATAAAACCAGTAAGCTAAATAGGCTTATAAGGAACATATTTCAACACAATAGAGGCTATCATATATAATAAGCCAACAGTTAACAttacactgaataaagaaaatctgaacactttttctgtaaaatttgaACCAAGAAAAGGATGTTCTCTTTTACCACTTTTATTCAGCATGGTACCAGGAGCCCTAGCCAGCGCAAAcaggcaaggaaaagaaagaaagagcaactaAATTGGAAAAGAGCAAGTTGAACCTGTCac--tttgcagacaacatgatcaTATACATATAGAAAACCTAAAGA--CTACCAAAGA----CCAGACTTAGTGAA----TTTGGCAAAGTTGCAGGACACAAAatcaatgtacaaaaataaatagcattgttGTATGCTAACAGTGAACAATCTAAAatagaaatcaagaaagcaatGCCACCTACAATAGCTgcccctcaaaaaacaaaacaaaaccaaaaattcctaggaataaatttaactaaaGAAAGGAAAGCTTTCTACGATGAAATTCataaaaaaactgataaaagaaactaaacaagacaccaaaaaaaaaaaaaaaagaaaaaaagtgttcaCAA------Ggaatcaatattgtgaaaatgtcta---tGCATTTAGCA-TCAACAGATTCAATGTCTTctctatcaaaataccaatggcattctttacaaaactagagaaaatacagttaaaatttgTTTGGAACCATTAAACCCCCAAATGACTAAAAGCAATACATTATTATTTCTTAATAGTCAAAccaatcttaaaaaaaaagaaa--gcaagaggcatcacagtGTCTTATTTTAAGATAACACTACATAGCTACAGTAATAAGAACAGCACACTATTGGTATAAAGACAGATACATAGCCGAGTGGAACAAAACAGAGAACTCATAAATAAAGCTATACA

a score=12258
s chr3            31776323 409 + 160039680 GAGAACTTCAGACCAATTTCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGG---AATTCA-AGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACAT-CAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttc
s HiC_scaffold_1 189668224 412 - 233722169 GAAAACTACTAAACAGTGTCACTTAgaaacataggtgcaaaaatcctcaacaaaatatttac-aatggCAACCAGTGGCACATGAAGACAATCATACCCCACGATGGAGTGCCTTTCGTTCCAGAGATGCAAGGGTGGTTCGCCATGCACAGATCAGTAAGTGTAGTACATCATATGAATAGAGTGAAGGGTGAAACCCACGTATTTatctcaacagatacag-aaaagcATTTGATGAAATTCGGTACCTCATCATGACCAAAGCCTTGGACAAAAAAGTTACGTACAGAAGCTTACCCCCCAATATTATAATGTCTTCATCTGGCAAACCTTCACCCGATATCCACAGTGAGTAGTGGAAAACCGAAAGCATTTCCTTTAAGgttaggaacaagacaaaggtGAGCACTCCC

a score=19208
s chr3            31776341 551 + 160039680 TCTCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTC--AAGGCCCATACCTAAACATGATA-AAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgccca-ctttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg-atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaa
s HiC_scaffold_1 220736845 548 - 233722169 tctttgatGAATGTATTGATGAAAGTGCTCATCGAAATACTAGTAAGCCTAATCCAAGAGCACACTGAAGAGATTTTTCACCATGATCAAATGGGACTCATCCAAGGGATACAAAAATGGTTCAATACACACAAATCAAagaatgtaatacactatatcaacagCATAAAGGACAGAAACCAGATGATT-TCTCAGTAGATTCAGAAAAGCCATTTGATAACATGTAATATCTCTTCACAATAAAAATgctgaacaaa-ataaattcagaagGAACATATCTCAGCATAATGTAAGGTCATTTATAGTAAACTAATGGCTAAAA--AGACTGAATGGGGAAAG--TAAAAGTTTTCTCTCCAAGATCTGGAACAAGATAAGGATACTCATCTTTCTCACT-TTTATTAAATGTAGTTCTAGAAGTCTCA-CTAGAGcagttaggcaagagaaagaaataaaaaggcatccaaataggaaaagaaaaagtcagattgttattgtttgcagatgatatgattttACATAGATAAAACCTCAAAGACTcctccagaaaa

a score=4025
s chr3            31776374 87 + 160039680 AAAATTCTCGCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGG
s HiC_scaffold_1 115439738 87 - 233722169 AGAATCCTAGCATACCAAATCCAAAAGCATCTTGAAAGAATTACATGCCCTGATCTAGTGGGGTTTATTCTTGGAATGCAAGAATGG

a score=55417
s chr3            31776424 2099 + 160039680 TGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAG--ACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCA-----ATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctacc--agagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaa-----actcttctcaaggataaaagaacctctggtggaatcaccatgcctgccctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggctt--gtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattacctatcctaaatcaaataggggactaatatccaacatatataaagaactcaagaag-gtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggctt-gtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctggagggcatcatcctgagtgaggtaacacattcaca
s HiC_scaffold_1 138321675 2028 - 233722169 TGATCACATAGATTTCATCATGATGAAGGAAGAaaggttcaacatatgtaagtcaataaatgtaatgcatcccATAAACAGGAATGAGGTTACAAAAACCACACTATCATATCAGTAGACGCAGAAAAGACTTTCAAAAAAATCCAACACCC-TTTATGTTAATAGTCCTGAAGAAAGCAGGTATAGAAGGATCATACCTGAAAAtgataaacaaaaaaatatttgtaactaACCAATAGcaagcattatattaaatggggaaaaactaagAACATTTCCcctaaaatc-------agacaaaaatgtTCACTTTCGCCTCTTTTATttgacaaaatactcaaaacattagacagagcagttaggcaagagaa-------aaaaggatacattttggaaaggaatattttaaattatcactatttgcaggtgacat-------taTACAGAAGGCCCAAATAATTCCACTAaaaaaaactcttagaattaataaccaattttagcaaagtagcaggatataagatcagcacacaaaaatcattaCCATTTTTGTGTACCAACAATGACTGGGAt-agaaggaaatagagaaaatgatACCATTTAGAGTTGCTTCAAGAAAAGTGAAAGATgtagaaatcaacctaaccaaggaaataaaagacctctacaa-gaaaactatagtattctataaaaggaaactgaagaggaaATCAGGAAATGATAAGATATCCCCTGGTCCTGGACAGGTAAAACTAATATTAACAAACTGGTCATGCTTCTAAA---ACTGTACAGATGCAGTACAATTCTAATCAGAATACCAcagc-atactttacagatctagagaaaccaaCCCTAAAGTTCATATAG------AAAAGGCTCAGAATTACAAAAGTATTGTTGTTCAAAAAGATCAAAGAAT-----GTAACATATCAATACTAGACttcaaactatattacaaagccacagtgataaaaatggcTTGGTATTGGAACAAAAAGAGACATGTTGGTCAGTGGAACAGGATAGAAGATACAGAATCCTCCCCAAATGTATTCAACTATCTGATCTTTCACAAAGGAGACAAAAGCAG-TGTTGGAGGAAAG--AATCTTTTCAACAAGTGATGTGGGCAAAACTGGCTCTC----TGCAGAAGAGTG-AAACTGAGCCCTAtatatcaccatatactaaattaaaaataaaatgggtcaaagatctaaacattaa--cgCAAACATTAAACCTACTGGAAGGCGAAATAGGTAAAATACTTGAAG--ATGAGTGTAGAAAagaattttctaaacagaacttcagttgcacaagaaatatcaga--aagactcaacaaatgggattacatcagact-gaaagcttctgtacagcaaaagaattcatcagcagagtgaagagataacctataGACTGAAAAAATTCTATCTACTTTGCCA------------GACtaatacaaagaatata-aaagaattgaaaaaatttaaaccacCTACAATTATAT-ACttagtcaagaaatgggcaaaagAATTGGACAAACACTTCACatagaaagaaatacaaacagtcaacaaatacatgaaaaaatgttcaacatctctgaccattacagaaatgc-aattaATATAATCCTGAG---TCACTCTTCTCTGAAAAGAATGGCAATAATTAgcaaatcaagcaataacaaatgctgtcatGACTGTGTC-AAAAAAGAACCTTCCTATATTGTCTGTGGGAATGCAAACTTAGTACAATGATGAAGGTaatctgtatggagatttctcaaagaactgaaattagaaattctgtgAGATCCATCTATCCTTCTGCTAGGAATCTTCCCCAAAGA--CCTCAATTCATC------ATACAT-----ACAAAGTTTATGATAGCATAATTCATAATTACTGGTTAGTGGAGGCAGCCTCTATATGCaccaacagatgactggata-agaAAAT---CTATCtgtacataatggaatactacttggctataTAAAATGGCACATGTaagacatttataggaaaatggatatgcctggaaaatataatgttaaatgaaataaaccaaacaca

a score=43780
s chr3           31776424 2067 + 160039680 TGACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggc-tgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaa--caacacccttctcaatagtcacaaataatataaaataccttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatgctcatggattggcaggat-caacattgtaaaaatggctatcttgccaaaagcattctacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacct-aggatagcaaaaactcttct------caaggataaaagaacctctggtggaatcac------catgcctgccctaaagctttactacagagcaattgt-gataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacgtatggtcacttgatcttcgacaaggg-agctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtactgtaagatcaagaattgacaaatgggacctcatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacaaattgggaaaggatcattaccta-tcctaaatcaaataggggactaatatccaacatatataaagaactcaag-aaggtggacttcagaaaagcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaacttcaggtgacagcagatgctggcgtggatgtggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattg-----gacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaagatgccccaacgggtaagaagg------acacatgctccactatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaa----ttcctagccaaatggatggacctggag
s HiC_scaffold_1  2194758 1973 - 233722169 tgaCCACATTGCCTTCACCCCAGGGATGAAAGGATGGCTCAAGGTACGCAAACCAATAAATATAATCTATCACACACACAGAAGCGAGGACAGAAATAATGT-ATCATCTcgatagaggcagaaaaagcttttgaaaaaatcCAAgattcattcatgattaaa-----aagaaaacaggcagGAGAGGACCCTGACtcgatctgataaaagccatttaggGC--ACCTACTGCCATTATCATGTCAAACGAGGAGAAACCAAAATCTTTCTTG-TAAATTCAAGCATAGGAGAAAGCACGTCCACAGTCACGGCTCCTGCTTCACACAGTGTTCCACACATCAGCACGAGCAATCCGGCAAGAAACGGAAATAAAAGGGACATGGATAGAGAAGGAGGAACTCGAATTATCTTCATTTG---------TTctgctacatagaag---acccaaaatacCCGCCAAAAGATGTCTATAATTGATAAACAAATTCTTCAGAGGTgcaagatataaaatcaacacataaaaatcaagagcatttctCTAGACCAACCAGGAACTCGCCGAGAAAGAAATCATGGAAAGTAAATATTATTCACAATACCACCAAGAAAAGTTAAGCACTTAGGAAT-----TAACTAAGAAACTGAGACAcctctacaacaaaaacagta---CCCTGAGAAAGGAGACCAAAGAAGCCATCAGAAGGCGGAAAGACATCTCCTCTTCCTGGATAAGCACAGTACAGCCC-------ATGGCCgtactttcaaaactgatatagGGATCCAAAGCAATCCCGATCAAAAT---AACATCATTCTCCAGAGCACTGGAGAAGGTAGTCCTGAAATTCAGATGGAATCAGAGCAAACctcagaacagcaaaagcaattttgggtaACAAGAGTAAA----------GTGGCACCACAGATTTCAAGCT--CTCTAAAGCTACAGTTAAAACCAGCTACAGAGAAAGCCAGCATGGT-CAGGCACAGAAACAGACCTGTGACTtaacagagcagaacagaggatgcagaaataacCGCAGACACGTTCAGCTATCTGATCTGTGACTAGGGAAGCCAGAAACATACCTTGGGGAAAAGATAGTCTCCTTAATA--------------AACTGACTGTTCATGTGCAGAAGACAGT--CTAGAACCATATCTCTCACtgtgtactaaagtaaaatcaaagagGAGCAAAGATCtcaatgtgaggacagaggcatttgatctgctggaagataaaataggtaaaactcttgaaggcaaAGATGTAGGCAAGGACCTT-----CAGAACTCCAGTTGC-------------acaggaatcaacaaatggggtcaTAGCAAACTAAAAGTCTTCTGCACAGTGAAAGAAACCGtgaacagagagaagagacaacctGAATAATGCAAAAAAATTCCCAGCTACTCCT--------CTGAGAAATGATacctagaatatgtaaagaactcaaattaAACCTACCCCAAACAAG-------GCCAATAAAAAGATGAGCCAGTGCAAccaacagacacttctcaaaagaagaaatacagatggtcaataaatacat----aaatggtcAGCATTACTGGCCATTCGATTAGCGCAACTTAAAACAATACTCAAATTCCATCCTGCCCCATAAAGAACGACctgcatcaagaaatcaaataatagcaaatgct-cCAAGGCCTCAGGGAAAGAGG-ACACTTCTACACTGTGGGCGGCAGTGTAAACTAATGC-ACCACTACGGAAATCAGTGTGACAGTTCCTCAAAAAGCCACCACTGAAATTGCac------atgacccagctattcc-cccgTAGGTGTCTTCTTACAAGAG--CTGAAGACGTAGTACAGTGATCCACACACACCCAGGAGTACCCAGCGCAG-----GTGATAAT-Gttaagtcttggaagcagcctatat--ccTTCAACAAGTGCATGGACCAAGAAAC--TGGTGTTTAAACGCCGTGG-GTACTACTCTACCagaaggaaggataaacttgggttacttgtttttaa--aaatgcatataccTTGAG

a score=7416
s chr3            31776426 307 + 160039680 ACCAAGTAGGCTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA--TAAAGGTTTTGGAAAGATAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttct
s HiC_scaffold_1 190943259 307 - 233722169 atcAATTGGGATTTGCCCCTGGGATGCAGG-ATGGTTCAGTCCTTGAAAATCAAACAATGTAATATCCCATACTAATAGAATCAGTGATAACAATAATATAATCATATGAATAGTTACAGAAAAGGCACTTAACAAAATTTAACACCTgcccatgattttaaaaactcagcaaCCTAGGGATGAAAGAATATGACGTCAACTCCTCAGAATTTACATATGCAAAACCCACAGTTGCTTTCATAATTAGcagtgaaaaactgaaaac-ttttgtcTAAGATCAGAAATAACACAAGGATGggcactgttt

a score=12313
s chr3            31776499 536 + 160039680 AAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAGGTTTTGGA-AAGATAGGAATTCA-AGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccctaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtata--tataag------------------------------------------------------------------tgaccct--------------------------------aaaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtagctgcatataaaataaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataa
s HiC_scaffold_1 216177554 617 - 233722169 aaagagaaacagagaaaaaaatca--tgactCTCCCAATAGAGGCAGAAAATGCCTTTGACAAAACCCAACATCCATTTATGATAACAAccttgaagaaaataggtatagattGGCCTAATTTCAATCA--GTGAAAGCCATTTGTGACCAACCTACTACCAACATCATGGCAATtgaggaaaaactgaaatttttctctctaaaatgaagaacaaga-aaggatgtccactgtcaccactcctgttcaaagtagtccttgaaacattagccagagcaattgagcaaaacaaaaaagtaaaatagatacATAT------------AGTCAAAATATCATTACTTGCAAATGACAAAATACCCTACTTACAAGCCTCAAGGGCCAGGGAGCTATCTCAGCAGCACAgacacctccctggcaagcgccagattgtgagtttgattcccactacaaaaaacaaaacaaaaaaaacctcaaaaaaattCCACGAAAAGACTCTTGGAATTAATAACCAA-TCCAGCAATGTATCAGGATACAAAACAATCACACAAAAATCcat-acattcctatacactactAATGAACTCAtt--gaaagaaatgaggaaaaaaaggattttcacaatagcatcaagaaa

a score=5492
s chr3           31920663 422 + 160039680 AAACCAAGTGTGTGAGTTGCTTTTGTGGCTTCGCcaaaatatctgagataaacaatttaaggagggaaacgaggcaattcttggttca--------------caatttcaaaccatggtcact------------tgaggttggacc--------agcacagt-------tataaaagggtatttgaggaaagctgctca---ccttgcag-cttgcaggaaacagagTCAGGGAAGTCAGTG---------TATACACATCCAAAGCACACTGCCAATGGCTACCTCTCCCATTATA-------CCCCTCCTGATCCCCACCACCTCCTTGTAATTTCATCAAATTACGAATCTATCCATGGGTTAATCTAACTGATGAGGTTAAAAACCCTGGGGCCCAGACacttccccaaagcccatcagttgtcacctaaggctttaacccataagtctttggaggacatttgagactcaaaccataa
s HiC_scaffold_1 77088647 464 - 233722169 AAATCAGGggtgttagct--ttctgtcactctGACAAAATTTCtgag-taaacaatttaaagaga------aggaaagcttTAGTTTGGCtgatggtttcagaagtttcagtccatgattattATTTGTCTCCATTGTCTCTGGGCCTGTGATGAAGCACAGCATTGTGGCAGATAGGGCTTAACAACCAAAGATGTTCAATGCATGGCAGTCAggaaggagactgagacagaga-gtAAGTGACAGGATAAGATAC-TGTCCCAAGGGCATGGCCTACTGAC-CCAGTCCCTTCAAAGAGGTCTCATCTCCTGGTTTCTACCACATCCTAATAATGCCTTCAAATTACGAATCCATCAATAGATTAATC-ACTCGATAACATTATTGCACTCATAATCCAGTTATCTTCTGAAAGGTA--CACCTGTGAACTTAGG-TTTAACACATGAG---TTAGGGGAGGTTTCATATTCAAATCTCAA

a score=22448
s chr3            32260271 858 + 160039680 ctattcaaaaatccaaagtGATT-CCTTTTCGTGTTGCCCCCTAGGCATCAGCTATGTCAAGATGAAGCTGAACATCTCCTTCCCCA-CCACTGGCTGTCAGAAA-CTCATTGAAGTAGATGACGATCGCAAGCTTTGTATGTTCTATGAGAAGCCCATGGCCACAGAAGTAGCTGATGATGCTGTTGGTGAAGAGTGAAAGGGTTATGTAGTCCGGATCAATGGTGGGAATGACAAACAAGGTTTTCCCATGAAGCAAGGCGTTTTGACCCATGGCAGAGTGTGCCTGCTGTTAAGTCCATGGCAGAGTGTGCCTACTGTTGAGTAAGGGGCATTCTTGTTATAGACCAAAGAAAACCTGAGAAAGGAAGTGCAAGTCTGTTCACAGATGCATTGTGGATGCCAATCTAAGTGTTCTCGACTTGGTTATTGTAAAGAAAGGAGAGAAGGGTATTCCTGGATGGACAGATACTACTGTGCCTCACTGGTTGGGACCTAAAAGACCTAGTAGAATTCAGAAGCATTCTTAATCTCTCCAAAGAAGATGATGTCCACCAACATGTTGTCAGAAAGCCCTTAAACAAAGAAGGTAAGAAGCCCGGGGCCAAAGCACCCAAGATTCATTGTCACATGTTACTCCACGTGTTCTGCAACACAAACACCAATGTATTGCTCTGAAGAAACAACACACTAAGAAAAAACAAAGAGGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGAAGGAAGCCAAAGAAAAGTGCAAGGAACAGAT-TACCAAGAGA------CTATCCTTACTAAGAGATTATACTTCT--AAATATGAATCCAGTCAAAAAT---AAGTCTTTAAGGGTAACAAATAA
s HiC_scaffold_1 107649324 762 - 233722169 ctattcaaCTACACagaatatttatctttatttgtgaCTTCACAGTTATCAACTGCTTCAAGATGATGCTGAATATCTTTTTCTCCAACTACTGGCTAAAAGAAAACTCATTGCAATGAATAATGAACACAAATCTTATAT--TTTATAAGAAGTGTATGAC-ACAGAAGTCACTGCTCACACTCTGAGTAAAGAATATAAAGCATATTTGTTCTAAATCTGTAGTGGAAATGATGGATAAAAACCTCTCTCAAAGCGAGGCGTCTTGACCCCAGGCCCTATCCACCTGCTACTAA---------------------------------GGGTGTTCCTGTTACAGGT---------------------------------------------TGGTGGTTACCAAGCTGAGAATTCTCAAGTTTTCTATTGCAAGCAACAGAG---AGGCTATTCTTAGAC-------TATTATGGTATCTTATTATGTAGGATCTCAAAGAGCTAGCTGAACCTGCAAAC-TTTTCAATTGCTCTGAAGAAGATGACATCTGCC-GTATGTTGTCAGAAAAGACT--GATAAAGAA------AAACTTAGGATCAGAGCACCCAAACTTCAGCATCTTATG--ATTTCACATGTCCttcaacacacacacaggtgTACCACCTTGAAGAAACAG-Gcactaaaaaga---taagaagaggCTGCAGAACATACTGACTTGTTGACCAAGA----GAAGAAGCccaaagaaaaacaccaagaacAGATATACCAAGAAATGTATGCTATCTTCTCTGAAAACTTCTAATTCTTAAAGTCTAAATCcagtcaaaaatttaaaaattttaagagtaaCAAATAA

a score=9636
s chr3            32260336 135 + 160039680 AGCTGAACATCTCCTTCCCCACCACTGGCTGTCAGAAACTCATTGAAGTAGATGACGATCGCAAGCTTTGTATGTTCTATGAGAAGCCCATGGCCACAGAAGTAGCTGATGATGCTGTTGGTGAAGAGTGAAAGG
s HiC_scaffold_1 154206193 135 - 233722169 AGCTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGG

a score=18975
s chr3            32260468 397 + 160039680 AGGGTTATGTAGTCCGGATCAATGGTGGGAATGACAAACAAGGTTTTCCCATGAAGCAAGGCGTTTTGACCCATGGCAGAGTGTGCCTGCTGTTAAGTCCATGGCAGAGTGTGCCTACTGTTGAGTAAGGGGCATTCTTGTTATAGACCAAAGAAAACCTGAGAAAGGAAGTGCAAGTCTGTTCACAGATGCATTGTGGATGCCAATCTAAGTGTTCTCGACTTGGTTATTGTAAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAGAGAAGGGTATTCCTGGATGGACAGATACTACTGTGCCTCACTGGTTGGGACCTAAAAGACCTAGTAGAATTCAGAAGCATTCTTAATCTCTCCAAAGAAGATGATGTCCACCAACATGTTGTCAGAAAGCCCTTAAACAAAGAAGGTAAGAAG
s HiC_scaffold_1 154206729 544 - 233722169 AGGGTTATGTGGTCCGGATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACT----------------------------GAGCAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTtggttattgtaaaaaaaggTGAGGTTTATGCTCTTCACGTTTAGTTTTTGTTGATGACTTACAGGTGTTTTTTCCTTTACGGTGTTTGCATATTAACCAGTGTATTTTACAAGTACCCTTGTAAATGATCATTTCAATGTTACAAAGGAAATTACTGAACTGAAATACTTCTGTTTACATTTGTCTCTTCTAAGGAGAGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGCGCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAAC-TTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGTAAAAGG

a score=13387
s chr3            32260855 275 + 160039680 AGGTAAGAAGCCCGGGGCCAAAGCACCCAAGATTCATTGTCACATGTTACTCCACGTGTTCTGCAACACAAACACCAATGTATTGCTCTGAAGAAACAACACACTAAGAAAAAACAAAGAGGAGGCTGCAGAATATGCTAAACTTTTGGCCAAGAGAATGA-----------------------------------------------------------------------------------------------AGGAAGCCAAAGAAAAGTGCAAGGAACAGATTACCAAGAGA------CTATCCTTACTAAGAGATTATACTTCTAAATATGAATCCAGTCAAAAAT-AAGTCTTTAAGGGTAACAAATAAA
s HiC_scaffold_1 154208414 372 - 233722169 AGGTAAGAAACCCAGGACTAAAGCCCCTAAGATTCAGCGTCT--TGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCGtactaag-aaaaacaaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGGTGAGTGAGATAAGGGAGGCCATGAAACCAGAATGGCTAATTTGCTGTTTTCACTGGAATAAAAGTCTGACTTCTTCTGTACTTCTGTTTTTTAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAGAAATAAAATGCTTAA--GTAACAAATAAA

a score=9383
s chr3           32305091 204 + 160039680 AGTGGTCCTCTGTCTGTCTTCCTCTTCCCACACTGCACTGCCTGGATTTGATTTGATTTTTATGAATCCTATGCATAAAACAGCTGTGGCCACCAAGCCAGGCATCAAGCTAGGATGAACAAAGGACTGCCATCTGGTCTGCCCCTGACTGATGTAAGAACACCACCACCACCAAGGTGACTCTTTTTGCCCATTGCCAGGAGG
s HiC_scaffold_1 37912041 200 - 233722169 AGAGGTTTGCTCTTTaatcctccctttttgctct-tattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTG--TCTCTTTGCCCATTGCCAGGGgg

a score=4108
s chr3           32501808 104 + 160039680 TCTTGGTTTCCTAAAAC-CCATTTGTCTGCTCTTGGAACAGTTTCCTATGTTACTGGAGTTCTTTTCAAGAAGACATTGCCCATGCCTATGTCCTGTAGTAGTTT
s HiC_scaffold_1 33112669 105 - 233722169 TTTTAGTTTGCTGTAGTTCCATTTGTTAACTCTTGATACTATTTCCTGTGCTCTTGAAGTTCTGCTTAAGAAGTCTTTGCCCGTGCTTTtgacttcaagtatttt

a score=4521
s chr3            32501821 98 + 160039680 AAACCCATTTGTCTGCTCTTGGAACAGTTTCCTATGTTACTGGAGTTCTTTTCAAGAAGACATTGCCCATGCCTATGTCCTGTAGTAGTTTCCTGATT
s HiC_scaffold_1 146279968 98 - 233722169 AATCACATTTGTTAATTCTTGGAATTATTTCTTGTGTAACTGGTATTCTGTTCAAGAAGTTCTTGCCTATGCCTTTGTCTTCaagtattttacctatt

a score=5390
s chr3            32923478 181 + 160039680 ATCCTAACATCTGGGATCCCAAATACTCCCACGTCTGAAAGTTTTGAGTATTGATGCAATGCCTCAGGTGAAAATTTTTACACCTGAGCTCATGTGATGGGTTAGAGTCAGAG-ACAGGTACACTAGAAATA--ATAAGAAGTTACCTTCCAGCTCTGATAAAGAGATATGTATGAAATAGAGA
s HiC_scaffold_1 201589907 173 - 233722169 ATCTAAAAATCTAAATGCTAAAGTGATCCTAAATCTGAAGTTTTTGAGCACTGAAATGATGCCACAAGTAGCAAATTTCACACCTGACCTCAGGTGACAAGTGACAGTCAAAATGTAGGCACACTGAAAATATTGTACAAAATTACAATCAGGCT-----------ATGTGTGTGAAATACAAA

a score=15781
s chr3            33315928 1164 + 160039680 TTTCAAAACTAATA--------------GGCTTCTGGATCCTCTTCATTCTGCATGAAACTGCATTTTTCTCAGAGGCAGCTGAGTCCTTGAGACATGGTGATAAAGTTCAAAGCAAATGGAATTGGCTGTATCAGAGTGCAGGGTCACCAAATCTGCTTTTCCTCTGGAAGAAAGGGATGTTACTTTCATTAATGTGGCCTTCATTAACCTCATCTACATGGTCTACATCCAGT--TCTGATTGCACTGGTGGCAAGTTCAGTGACACAGTCAAAGCTATCTATCAAA-CCTTGTCACCAATGAAAAGTTCATCTTCATCTCTCAGGAATGAGATC---------CACAATGAGTTGACCCTGTGCTGAACATGTTGTGGACTCATCTGGCACTTGTAT-AAAATAGAGCAGGCTAGGG-TTACTTGAGGAGTGAAGCTAATAAGGCCATCATCTATGTCCCTTCTGCAGATACTTCCATGTGTGTGCTGGACACAAATAATGAGAAGT-------CTACCTCATTGGCTATCAGAAATGCCTCCAGCACCAACAAGTACTTGAATCACCTAGACAAAG-CATCCATGATGAACTTACAACCGTAAAAGAATTTGT--------GGCCATAATTTATGCTGACTGAAATCTAGAATATACCTTTATGGACATAGTCACATGATGGCTCTGAGGATACCCAGAACATTATCCATGCATCTTTTAGAGCAAAACAAAGATTGAGGTTTTCCCTTAGCTGAATGAAAAACTTCCTGCTATGCCTTTCTATGTCCCCACCTCTAA--TGTTGACTGTGACTCTGACTGGCCATCTGAAAAAGGCTGCCACATAT--TGACA----AAAATTGGCCAAGCAGAAACCTCAGGGTTCCC-----------------CAGAGAACCAGATTATCTCC--TGCAACTTAAAAAATCATGTCCACTCTTCCATTTTGGAAGCTGGAGCCAGCATTACCCTCAGTTAGCCACTGTCTCATGCTCATTTCT-----------TGAATTTAGCTGCAGCAAAGGATGATCAAGAAATAAAACCTCTCCTTGCCAACCCTGGCTCAACGAAGT---CCATCAGCTCCAATGATAAGTTAGGAGAAAGAG-----AAACT------------------ACCTCAGCTCCCAGGAAACCCTTGGACTTAGAACATTCCTTCCTGGGCATGTTTTCATCCCATGCTTCTTGAAGATAG-----TAGTTCTATCTTGTCCTGGAGCATCAGTA
s HiC_scaffold_1 135784237 1231 - 233722169 tttcaaaattaatacttGCATgggatctgttttattttttcttctcattttacagacaGCAACATCCTT-TCATGGCCACCTATATACCTGAGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGG-GTGCTTGGCTATCCAGTCTGCTTTCAGGACAGGCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAGTCCA-------------GGAGTAAGATTTATCAGCATCAAAATGGGT-GAACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGATACCTGT-TACTTGTGATGGGCCTGAACTACCAGAAGTATGACTGCTATCTCA-GGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAACCCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATCACCAGGTCATCCTTCTTAT--ACAGAAGACT-GGATGGCTCTTCTGGAAAACTGTAGCTTGATAGGCATGTGGCTGCCCAGATCAT--CCTATGCTGATGCT--GCCAAGTCTATGGTCTAGA-TCACCCCTGGCTGGATGCCAAGACTACTAGCATATGCTTCTGTGGGCTGCCTACTAGCTTGTCAGTTGTAGGTCTGACATGCTGTCTAGAGAAAGCTGCAGAATATGATGACATCTGTAAGGTGGTGAAACAGGCACTGGAGGGCCCCTAAATGACAACCTGGCTAcagaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGA-TCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCA----------GCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAGTAGGCCACCAGCCTgagcaagaaatgaaaagagagggGCTTTAAGCTGAGGAAGTGTCTTGCCCAAACTCAGC-CCCACAACACTCTGAGACTC------TCTCCTCCTGTG--GGCTCCCATGCCAGACCTCCTGAAGAAGGGGAAAGATGCTTACTCTGTCATGTACCATCCGTA

a score=10032
s chr3           33392992 203 + 160039680 ATGGTGGAACACAGATTTCTGTCTTCCTCCTCCCATGCTGTGCTGCCTGGGTTTGATTTGATTTTT----ATGAGTCCTAGGCATAAAACAGCTTTGACCATCAAGCCAGGCATCAAGCTAGGATGAACAAAGTACTGCCATCTGATTTGCCCCTGACTGATATAAAAACACCACCACCAACAAGGTGTCTCTTTGCCCATTGCCAG
s HiC_scaffold_1 37912031 206 - 233722169 ATGAAGGGAAAGAGGTTTGCTCTTTaatcctccctttttgctcttattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAG

a score=3849
s chr3            33488535 118 + 160039680 TGTTGTCATTGTATGAGTATCATAGAGTATTTATATAA--ACCTAGAAG-TGTATGTCAATCACTTGATAAGGCCTCTTGACATAATCAAGAGGTGTGGTAAACACGAGATGAATGGGGCT
s HiC_scaffold_1 199737506 121 - 233722169 TGTCATCATTGCGCGGTCCTTGCAGTGTATGCACGCACCCACCTGGATGACATCGGTCAATCATGTCACAAGACCTCTTGCAGCAATCAAGAGATGTGGTAAGCAGGAGGTGGCTGTGGCT

a score=4698
s chr3            33488537 116 + 160039680 TTGTCATTGTATGAGTATCATAGAGT--ATTTATATAAACCTAGAAG-TGTATGTCAATCACTTGATAAGGCCTCTTGACATAATCAAGAGGTGTGGTAAACACGAGATGAATGGGGCT
s HiC_scaffold_1 202721582 119 - 233722169 TTGTCCTTGTGTGAACAACATAGAATCTACTTACACAGAAGTACATGATGTAGGTCAGGCATTTACTATGGCCTCCTGAGGCAATCCAGAGATGAGGTAAACAGGAAATGTATGAGGCT

a score=10320
s chr3            33809499 381 + 160039680 GTTAAGAAAAATTTACCTCAAAATTTACTCAATATATTTAATCAGATAGCTGAATTTGAGAAAGAAAAAGGGAACAAGCCAAAAAAATGATCTGCTAAGGAAATTTTAATTTCCAG--AAGTTTGGGGATTCTTTAGCCCTAACAA----------ATAGTTCTAAGTCTAAACTTATTTGTAACAGATCACAAAAGGCT--------GTTTTGTT----TTCATTATCAGCCCCTTTGTC--------AGTGTT---------GTGGGTATA--TGTGGATACAACTTTTA----ACTAACAGTTCAGACTTTTTCACCTAAAGATAGTT-TCTGAGTACTTTGTTTCTTCACTATAATATGGTTTGTGAGACTCCTTCCTTGGGTCCATCTTATTTCACTGTT--AGAGAAAACT--ATGTTTGCATTGAA
s HiC_scaffold_1 178161969 419 - 233722169 GTTCTAAAAAATTTACCTCGAAATTTACTCAATATATTTAATCAGATAACTGaattt------gaaaaaggaaacaagCCAAACACTTAGTATGTCAAGGAATTTGTACCATCCTACTAAGTTTTAGTGTATTTTAATCATAAGAATCTGATGTAGAAATATCTGCTTCTAAACTTATTGGTAGGA-ATTACAGAAAgttttcctcaaattttattcCTGTTGGTTATAGGTCCTCCTGTCCCAGTTTGAGTTTTAGGCTTTTCATGGGTATATTTATGTATGCTATATTTGTCGCtctgataatttaaatttctttgcttAAAGGTAATTCTCTGAaaacattg---ctttgttttattatggtgTATGAGAA----TTTCTGGGCtcatttcatctttctgtttgaaagaaaattaaatctttGCATTAAA

a score=7297
s chr3           33959071 128 + 160039680 GTTAGGCTGCTAATCATTCAGATGTTCGTAGGAAAGAACACTGAGCATACTCATAGCGTCTCTCCCCTCTGCCACCTTCTGATGCACATGTGACACAGCAGCCACATCTGCAATGCCTTCAGTGGCAG
s HiC_scaffold_1 39210493 128 - 233722169 GTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=4746
s chr3           34009905 247 + 160039680 GGGCATCAGATTATTCCAGGCTTCCTTTCATGAAGATGAAAG--------GTCACAACTGAAAGAGA--CATCCCCCTTC----CAGGCTCTGGAGTACTGTAGAGGGTGGCCGCTTGGCTTCTGGATGAGTCAGTCAACAACTTAGCTTTGGTTTGAGGACATGGAACTTCAGTGTGGGTGATTCCAATTTGATTGTCAG-----CTTGTCT-------GTGTGGTCCAGTACAGGGCAAAGCCGTGGTGCCACCTACAATTTTTACTTAAC
s HiC_scaffold_1 70271100 265 - 233722169 GAACATCAGATCGCTTCAGACTGTTTTTTGTGAGGGTTAAAGCAAGTAGAGTTAAAGCAGAGGAAGCTTCATCATCATGCTGATCAGCCTGTTTGGGAATTTGACTTTCATTCTTCTGGTTTCTCGAAAGCTCAGATAACAATTCAGTTTCAGTTTGGTGACATGGAACTTTTGCGTGGGTGACTCCACTTGGAATTTTAGTCTCATTTGTCTCCCAGGGCTGGAGCCCAGTCTAGACCACAGCTTT--------CAGTAATTTTTATCTAAC

a score=21777
s chr3            34184514 597 + 160039680 GGGTGCTAGGCCCCTGTGTAGTAGTTTATAGAATTCTAGCTTTTTTTCCTTTTC-----------TCTGTATATTGGGCTCAGAGATTACAATGTGTCTCTATGTGAACACAGACAGTTAGCATTTACCAACATGTATCTGTCTACTTTCTCTTGTCTAATAAAAAGAAAAATGTAAAAAGAA-----AAAAAGGGGGGTATAGACGGTGAGC-AAGGGTGGGATTGGGGCATCG---GGGATAGGTGGGCATCTGACAACATGGCTTCTCCTTTGGCATGTTTAATTGTGATGTTTAACAGACATCCTTGCACTTTAAGGTGATACTGTTAAAATAAAATTCTCTCCTGATGATGACTTGAGCCATGACACTCAATGGGAGAATCAGCAGAACCTGTACGGTTTTATTTGGAGTTGACATTCTCTGTTGTAACTTTATTTTTAAtttttttctttttctttttctttttctttttctcttcctttttctttttctttttctttcttttctcgcttttttttctttttttGGTTTTCACTGGAAGGAAAAAGATGCT----CATTTTAAATGTT-GAAGTGTACAAGTTGCTTTGTTATAATAAAATCA-ATGTGTAAATaca
s HiC_scaffold_1 176044406 521 - 233722169 gggtgctctaccactgagt-----tttat----tcctagccctttttgttatttatttttaaaattctgtataatgaGCTTAGAGATTATACTGTATCTCTATGTGAATATGGACAGTTAGC-TTTTCCAACATGTCCCTGCCtactttctcttgtttaaaaaaaagga----ttaaaaagaacttttaaaaaatggggtATACAAGGTCAGCAAAAGGTGGGTTTGATATATTAGGTGGGTTAGGTGGGCATTTGACAGA-------------TGGCATGTTTAACTATGA--TTTAGCAGACATCCTTGCAGTTTAAGAtgacagttttaaaataaaattatctcctAATGATGACTTGAGCCCTGCCACTTGATGGGAGAAT---CAGAACCTGTAGGATCTTATTTGAAATTGACATTTTCTACTGttattttgtt-------------------------ggtttatttttaacatctttt---------------------------------------------gttttcacTGGAAAGGAAAAGGTGATGCAGAGTTTTAAATGTTCAAAGTGTACAAGTTGCTTTGTTACAATAAAACTACATgtgtacacaca

a score=5236
s chr3           34352968 259 + 160039680 GAGGTAGTAGCAGT---GCACAGTGATAACGAATGTGCAGAGCAACTCATATCCCATAATGCTGGAGCTAGGTAGCATG------CAGCACAATGCACTGCTCGCTTGTTGGC---GGTGACAGTATAAACAGACATACAGAGAATCTAGTCACGGAGAAGTCAAGCACATATAATTATGTGCAGTGCATAATGCTTGATAA---TGATAATGATTGATAAATGACTGTGTTTCTAGTTCATGTATATAC-TATAC--------------TGTATTTTTATCATTATTT
s HiC_scaffold_1 50351175 283 - 233722169 GATGCAATGGCAGTCCTGTAAGATGATAACAGA---GCTGAAAAATTCTTGTCGCCTAGTGCTGTTG-TAGCCATCATAATGCCATAATGCAACACATTATTCACATATTTGTCATGATGCTGGTATAAACAAACCTACCATGCTACCAGTCATATGAAAGTATAGCACACACAATTATGTACAGTACATAGTACTTGACAAATGTGTTACTGCTTTATGTAT--TTATAGTACTGGTTCGTGTACTTATGTATACATACCATGTACTAGTgtgtatttattatacttt

a score=6502
s chr3            34353042 223 + 160039680 TGCAGCACAATGCACTGCTCGC-TTGTTGGCGGTGACAGTATAAACAGACATACAGAGAATCTAGTCACGGAGAAGTCAAGCACATATAATTATGTGCAGTGCATAATGCTTGATAATGATAATGATTGATAAATGACTGTGTTTCTAGTTCATGTATATACTATACTGTAT-------TTTTATCATTATTTCAGAATGGTAGCGTCTTCTTACTTGTGAAGGAAAAGTT
s HiC_scaffold_1 174135501 212 - 233722169 TACAGGACAATGCATTCCTCACATTTGTAGTAATGCCAGTGTAAACAAACACACTGTATTGCCAATCATATATAAAAACAGCACACACAATTATGTACAGTACATAACATCTGATCATGAGAAT--------AATGAC--TGTTACTGGTTTATGTATTTAGTACACTAAATACTAAGCCTTTATCACTATCTTAGAGTGG------ATTcctactt---aaataaaaatt

a score=28008
s chr3           34651939 535 + 160039680 AAATTTAGGACCGTTACAAACAAGGAAGGAGTTTATTCGGATTTGAACATTTTAGTT--TTAAAA--TTGTACAAAAGGAAA-ACATGAGAGCAAGTA--CTGGCAAGACCGTTTTCGTGGTCTTGTTTAA---GGCAAACGTTCTAGATTGTACTAAA-TTTTTAACTTACTGTTAAAGGCAAAAAAAAAATGTCCATGCAGGTTGATA----TCGTTGGTAATTTATAATAGCTTTTGTTCAATCCTACCCTTTCATTTTGTTCACATAAAAAATA-----TGGAATTACTGTGTTTGAAATATTTTCTTATGGTTTGTAATATTTCTGTAAATT----GTGATATTTTAAGGTTTTTCCCCCCTTTTATTTTCCGTAGTTGTATTTTAAAAGATTCGGCTCTGT--TATTGGAATCAGGCTGCCGAGAATCCATGTATATATTTGAACTAATACCATCCTTATAACAGCTACATTTTCAACTTAAGTTTTTACTCCATTATGCACAGTTTGAGATAAATAAATTTTTGAAATATGGACACTGAAATTATGCCTGAGTC
s HiC_scaffold_1 13946475 550 - 233722169 AAATTTCTGGTCTTAACATGGAGAGAAAAAATT-ACTCAGATTTagatattttaattgtttaaatatttgttcaaaaggaaagaaattaggaTAAGTATACTGACAAAACCATTTCTATAGTCTTGTTTAAAAGGGCAAAAGTTTTAGATTgtactaaaatttttaatttactgtt-----taaaaaaaaag---ccatgcaGGGTGACAGACATCATTGGTAATTTATAATAGCTTTTGTTTGAAcccatctttccattttgttccgataaaaaaaagcaactgaaatcactgtatttgaaatattttcttattgtttgtaATATTTCTGTAAATTTATTGTGACATTTTAAGGTTCCtccttc--tttattttccattttggtattttaaaagatTCGGCTCTGTATTACTTGAATCAATCTGCCAAGAACCCATGTATATATTTGAATTAATACCATTTTTATAATAGGTACATTTTCAACTCAAGGTTTTACTCCATTATGCACAATTTGAGTTagataaatttttgaaatatgaaaaaaaaaatctggtcttAGCC

a score=51504
s chr3            35536901 944 + 160039680 ATTTTTCCCCCTGGTCATCTAC--------TCCATT------CTCTGCAGGTCGCTTCTTCAACCACTTCATTTTCCTCATTTGTAGTTTGCTTAAGTCCTGCTTCTGCATATGAATCCTTCCAAATGTTGTGCCAAAAGTATCCTGAGAGATATTCTTTCTCTTCTTTGGCTTGAGAGCCTTGGGCACTTTCATGGACAGTTTATAAAGGTCATCTGATGCTAGATGTGTCCTCCTCATAACCAGGTCCAGTGATGGTCCCATCTCTTCTAGCTCAATTCGTGGTGTTCTTCACCCAGATTTCTTCAACAGCAGCTTATAGCTTAGGAAGTAAACCTTCCCATTCAGTGCAGTGAACTGCAGAACATACTCTAATCCATCCAGCTGGACGTTCAATAGTGTGGGGCCACTGAAGAAATCAATAAGAAGATTTTTTTAATCTTCTGTAGTCTTCTGTTACATCAAAATCATCACCAGCAAATATCAACATTGGTTTTGTTCCCTCGGGGCACTTACTAGTCTTAACATCTTTTAGAGACACAAATTTCTCAATACCTAATTCAATCATGTCCAACACATGGTAGTCATACATACAACCTATTACTAGGTTATTTGGCCTCTTCTTGTTATGGGAGCCAAACATGAATAAAGAGCAGTCTGACTTCTTTGAAAAGAACTCCAGTGATGTCTAATCCTCAAATGGTCTTGTAATATTTTTCTTCTTATATAGAACTCCATATGGTTTCCTCAGTGCATACACGTCTCTGAGTACTTGTGTCACGGTTGCATTTGCATTTCCGCCTTTAATCAGCATGGTATTCTTAATGTTCTCAGTGAGTTTCGGTTCTCTCTTCTCAAGGAATCTCTTAGCCTTTTTAGTTTTAGGCTTTACAACTTTGTCCAAAGCATCCATAGCTGCCAGATCCC----TTAGCAAATGCCTAGACCTCACCTCTTAGCC
s HiC_scaffold_1 113238110 933 - 233722169 ACTGTTCCACTTAGTCACCTACATTCCTGGCCCATTAATCTTCTCTTCAGTTCACTTTTTCAATCCCTTCATTTTCCTGGTTTATAGTTTGCATAGGTCTTGCTTCTGCATATGAATTGTTCTATAAATTGTACCAAAAGTATCATGggagatatttttcttcttctttgactTGAGAGCTTTGGA-ATTTTCATAGATAACTTATAAATGTCACCTGAGTCCAGGTGTGTCCTCCTCAGAACAAGATCCAAGTAAGGTCCCATCTCTTCCAACCCAATCTACGGTGTTCAGCAACCAGATTTCTTCTACAGCAAC-------------------CCTTCCTCTTCAGAGCAGTGAAGTGCAGAGTGGACTCTAATGCATCCAGGCAGATATTTGCTACTGTGCAGCCTCtgaaaacatcaataaaaagacattt--agtcttcTG-AATCATCTGTTATATCAAAATTTTCACCAGTGAACATTAATATGAGTTTTGTTCCCTCAGGACACTAACTGTTCTTACTATCTTTTAGAGGCACAAATTCCTCAATACCTAAATCAATCATATCCAGAACATGATAATCATACACATGACCTACTACTAGGTTATTGGATCGCTTCTTATTATGGGatccaaatgtgaataaaaaa-aatctgacttcattgaaaagaattcCAGTGATGTCTTATCCACAAATGGTctt-taatacttttctttttatacagAACTCCATATGATTTTTTCAGTGCATATACATTTTTAAGTACTTGTGTCACTGATGCATTTGCATTTCCCCCTTTAATCAGTATggtatttctaatattttcattaagTTTTAGTTCTCTCTTCTCAGGGAATCTCTTGGCCCATTTTGCTTTTGGCTTTCTAACTTGTTCCAAGACAGCCATCACTACCACAACCTAAGATTAGCCAATA-CTAG---TCACATACTAGCC

a score=23584
s chr3           35761494 372 + 160039680 TTTTATGGTAACTTGTCAGATTGTCTATGAGCAAACCTGTTTTTTAAAGACATTGATAAATTCTTTCCTTCATGGGATATCTTATACAAGAACACTTCAGATGTG------------ACTGATTTTAACAAATCCTATTAGGTTTGTATCAACTGGTTACATGTTTTATTCATAGTCTTTTGTGAATCATTGTCTTTT-GTTTTAAAAGATGGCCTATTTTGAACCTTTGTATAGGTACATTCCTGTTTTTGTGACAAAGGAAAAACTTTAAACTGTCCCAAACAGAAAAATAGTAACTAACAGAAGTATGGTTTATTTTAGTGTGAGTTGCTATTACTGTATTTGTTTATTATAAAGGTAGACATTTAGCGCTCAAAGCATttt
s HiC_scaffold_1 70983017 364 - 233722169 TTTTATGGTAACTTATCAGATTGTCTATGAACAAACTCACTTTTTA--GACATTGATAAGTTCTTCTCTTCATATGATATTTTATACAAGAACACTTCAGATGTGTTATTAGATGTGACTGATTTTAACAAATCCTATTAGATTTGTATCAACTAGTTACATG----------------TTGTGAATCATTGCCTTTTAGTTTAAAAAGATGTCCTATTTTGATCCTTTGTATAGGTACATTCCTGTTTTTgtgacaaaagaaaaactttaaactgtcccaaatag-aaaataatggctattagaaatatgttttgtttta--gtgaGTTATTGTTACTGTATTTGTTTATTGTAAAAGTGGGCATTTAGCATTCAGTGCAGCTT

a score=42091
s chr3            35863813 1252 + 160039680 TCCTCCCTGTTCCAGAGACATCTGCATCTTCTTGTGCAGTGCCAGCCTCGCCCCGTAGAGAAGATGGTGAAGGTCAGTGTGAACGGATTTGGCTGTATTGGGTGCCTAGTTACCAGGGCTGCCTTCTGCTCTACACTCGGCAAAGTAGAGATTATTGCCAACAACTACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCCACCCACGGCAAATTCAACGGCACAGTCAAGGCTGAGAATGGGAAGCTTGTCATCAACAGGAAGCCATCACCATCTTCCAGGAGCGAGATCCTGATAACATCTAATGTGGTGATGCTGGTGCTGAATATGTCATGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCAGGCCCCACTTGAAGAGTGAGGACAAAAGGGTCATTATCTCTGCCCCTTCTGCTGATGCCCCCATGTTTGTAATGTGTGTGAACCACGAGAAATATGGCCACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAAATGCTTAGCCC-CCTGGCCAAGGTCATCCATGACTACTTTGGCATCGTTGAAGGGCTCATGACCTCAGTCTATGCCATCACTGCCACTCAGAAGACTGTGGATGAGGGATGGTCCCTCTGG-AAGCTGTGGCATGATGACTGTGGGGCTGCCCAGAACATCATCCCTGTATCCACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCACAGAGCTGAACAGGAATGTCACTGGCATGGCCTTCCATG---TTCCTAAAACCTATGTTTCCATTGTGGATCTGACATGCTGCCTGGAGAAACCTACCGAGTATGATGACATCAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCTACTGAAGGGCATCCTGGGCTATACTGAGGATCAGGTTGTCTCC--TGCAACTTCAACAGCAACTCCCACTCTTCCACTTTTGATGCTGGGGCTGGCGTTGCTCACAGTGACAACTTTGTAAAGCTCATTTCCTGGTATGATAATG--------------AACAAGGTGGTGGACCTCATG---------GCCTCCAAGGAGTAAGAAACCCTGGACCACCCACCCCAGCAAGGACACTGAGAGCAAGAGAGAGGCCCTTGGTTGCTGAGGAGTCCCTGTCCTGACTTGGCCCC-CAACACTGAGCAACTCCCTCAC------AGTTTCCATCCCGGACCCCCATAAAAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAGTAAAGTTCACTACACC
s HiC_scaffold_1 135784275 1207 - 233722169 ttcttctcattttacagacaGCAACATCCTTTCATG----GCCACCTATATACCTGAGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGGGTGCTTGGCTATCCAGTCTGCTTTCAG---GACA---GGCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAG------------TCCAGGAGTAAGAT-TTATCAGCATCAAAATGGGTGA-ACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGATACCTGT-TACTTGTGATGGGCCTGAACTACCAGAAGTATGACTGCTATCTCAGGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAACCCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATC----ACCAGGTCATCCTTCTTATACAGAAGACT---------GGATGGCTCTTCTGGAAAACTGTAGCTTGATAGGCATGTGGCTGCCCAG---ATCATCC-----TATGCTGATGCTGCCAAGTCTATGGTCTAGATCACCCCTG-GCTGGATGCCAAGACTACTAGCATATGCTTCTGTGGGCTGCCTACTAGCT---TGTCAGTTGTAGGTCTGACATGCTGTCTAGAGAAAGCTGCAGAATATGATGACATCTGTAAGGTGGTGAAACAGGCACTGGAGGGCCC-CTAAATGACAACCTGG---CTAcagaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGATCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCAGCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAGTA----------GGCCACCAGCCTgagcaagaa-----atgaaaagagagggGCTTTAAGCTGAGGAAGTGT-CTTGCCCAAACTCAGCCCCACAACACTCTGAGACTCTCTCCTCCTGTGGGCTCCCATGCCAGACCTCCTGAAGAAGGGGAAAGA------------TGCTTACTCTGTCATGTACCATCCGTAAAGTCCACTGTGCC

a score=26969
s chr3            35863815 1333 + 160039680 CTCCCTGTTCCAGAGACATCTGCATCTTCTTGTGCAGTGCCA-GCC-TCGCCCCGTAGAGAAGATGGTGAAGGTCAGTGTGAACGGATTTGGCTGTATTGGGTGCCTAGTTACCAGGGCTGCCTTCTGCTCTACACTCGGCAAAGTAGAGATTATTGCCAACAACTACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCCACCCACGGCAAATTCAACGGCACAGTCAAGGCTGAGAATGGGAAGCTTGTCATCAACAGGAAGCC-ATCACCATCTTCCAGGAGCGAGATCCTGATAACATCTAATGTGGTGATGCTGGTGCTGAATATGTCATGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCAGGCCCCACTTGAAGAGTGAGGACAAAAGGGTCATTATCTCTGCCCCTTCTGCTGATGCCCCCATGTTTGTAATGTGTGTGAACCACGAGAAATATGGCCACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAAATGCTTAGCCCCCTGGCCAAGGTCATCCATGACTACTTTGGCATCGTTGAAGGGCTCATGACCTCAGTCTATGCCATCACTGCCACTCAGAAGACTGTGGATGAGGGATGGTCCCTC--TGGAAGCTGTGGCATGATGACTGTGGGGCTGCCCAGAACATCATCCCTGTATCCACTG----GTGCTGCCAAGGCTGTGGGCAAGGTCAT---CACAGAGCTGAACAGGAATGTCACTGGCA-TGGCCTTCCATGTTCCTAAAACCTATGTTTCCATTGTGGATCTGACATGCTG--------CCTGGAGAAACCTACCGAGTATGATGACATCAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCTACTGAAGGGCATCCTGGG--------CTATACTGAGGATCAGGTTGTCTCCTGCAACTTCAACAGCAACTCCCACTCTTCCACTT-------------------------------------------------------------------------------------------------------TTGATGCTGGGGCTGGCGTTGCTCACAGTGACAACTTTGTAAAGCTCATTTCCTGGTATGATAATGAACAAGGTGGTGGACCTCATGGCCTCCAAGGAGTAAGAAACCCTGGACCACCCACCCCAG--CAAGGACACTGAGAGCAAG--AGAGAGGCCCTTGGTTGCTGAGGAGTCCCTGTCCTGACTTGGCCCCCAACA--CTGAGCAACTCCCT--------CACAGTTTCCATCCCGGACCCCCATAAAAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAGTAAAGTTCACTACACCCACCCCACCCCCaaacgggatacagttctaaactgaattacccaaagaagaaagtcaaatgactgaaaaacatataaagaaat
s HiC_scaffold_1 224193781 1354 - 233722169 CTTCTCATTTTGCAGACAGTCACACCTTTTCATGAAGTGCTATGCCATTGCATCATTGAGACAACAATGGGA---AGACTGGAGTAATTTAACTGTAATGAGTGCCTAATCACCTTGGCTGACTTTAACTC------CAGCAAACTGGATATTATTCTCATCAGTGACCCCTTCATTGACCTCAACTACATGCTACACACATTCCACTATGATTCCATCCACA-CTCCTTCAATGGCACA-TCAAGGCTAAGAGCAAGAATCTTGTCAACAATGGAAAGCCCATCTCCATCTTCCAAAAGCAAGATTCCATCAACACCAAACTAAGTGATATTGGTGCTGAGATTTTTATAGAATCCATTGTTGTCTTCACTACCTTGGAGAAA------------CTAAAGTAT----ATAAA--------TGTTGGAGCCCCTTCTCCTGA-GAACCCATATTTATGAAGATTGTAATCCATGAGAAGTAAAATAATTACTTTA------------------CCTATACTACTAACAGCTAACCCACCTAACCAAAGTCTTCCATGAAAACTTCGGCATTGCAGAGGAGCTCATGGTTTTAGTCCATGCTATTACTGCTATCCAGAAAAGTGT-------AGATGGTTCTTTTGTGAAAAGTATGCCATCATGGCCTTGGGGCTGCCCAGAAGAGCATCCTTCTAATTACAGCCATATACTGTCA---CTGTAAGCAATGTCATTCCTACAAGAGTGAGAAGCAGT----CTGGAACTAACGTTCTGGGTTTCTACTCCCAATATATCAGTCATAGATCTGATCTGGAGAAAGATCTCCTGGAGAAAGCAGCTAAATATGATGACCTTAAGA---TGGTGAACCAGGGCTC-AAAGGAATCCTTAAAAGCATCTTGAAAAAGATTCTTTCACTAAGGACCAGGTTGATTCCTGTGACTTTAACAGTGGTATATGCTCTTCctctttagggaaaaaaaaaaaaataggatagttggtttttgttttttttttttttttttattcaaaagaaCCACTTTGGGAAACTTTatagatagaaaaatagaaaCGTTGGTGAGGGGGCAGG--------GAAATGCCAACTTCATTAGACTCATCTTCAGATATGACAATGAATCTGGC----TACACAAAGACATCCAAGGATTGGGCCTTCC-GGATCACCAGCTCCAGGAGAAGga-----agagtaagaaagaaagacTGTCTCATGCTATGGA-TCCCTGCTCAACTCTGTCCTTCAACACCCCGAGGATCTCCCCTTTTTTGGCATAGGTTTTACCACAGACTCCT-TACAA--AGGATGGG-------------------TCTTTTTCAT-CCATGATTAATCTACTTTAAATCTACTTTg--ctgagacaagaaaaag----aaaaaaaat-----acagaggaaagTTCTATAGCTGAAAGAGATATTAAAAGGT

a score=12434
s chr3            35863894  996 + 160039680 AACGGATTTGGCTGTATTGGGTGCCTAGTTACCAGGGCTGCCTTCTGCTCTACACTCGGCAAAGTAGAGATTATTGCCAACAACTACCCCTTCATTGACCTCAACTAC-ATGGTCTACATGTTCCAGTATGACTCCACCCACGGCAAATTCAACGGCACAGTCAAGGCTGAGAATGGGAAGCTTGTCATCAACAGGAAG-CCATCACCATCTTCCAGGAGCGAGATCCTGATAACATCTAATGTGGTGATGCTGGTGCTGAATATGTCATGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCAGGCCCCACTTGAAGAGTGAGGACAAAAGGGTCATTATCTCTGCCCCTTCTGCTGATGCCCCCATGTTTGTAATGTGTGTGAACCACGAGAAATATGGCCACT-----------------------------------------------CACTCAAGA----------------------------------------------------------------------------------------------------------------------------------------TTGTCAGCAATGCATCCTGCACCACCAAATGCTTAGCCCCCTGGCCAAGGTCATCCATGACTA--CTTTGGCATCGTTGAAGGGCTCATGACCTCAGTCTATGCCATCACTGCCACTCAGAAGACTGTGGATGAGGGATGGTCCCTCT----GGAAGCTGTGGCATGATGACTGTGGGGCTGCCCAGAACATCATCCCTGTATCCACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCACAGAGCTGAACAGGAATGTCACTGGCATGGCCTTCCATGTTCCTAAAACCTATGTTTCCA--TTGTG-------------------GATCTGACATGCTGCCTGGAGAAACCTACCGAGTATGATGACATCAAGAAGGTGG-TGAAGCAGGCATCTGAGGGCCTACTGAAGGGCATCCTGGGCTATACTGAGGATCAGGTTGTCTCCTGCAACTTCAACAGCAACTCCCACTCTTCCACTTTTGATGCTGGGGCTGGCGTTGCTCACAGTGACAACTTT-----GTAAAGCTCATTTCCTGGTATGATAATGAA-----------CAA----GGTGGTGGA-------------CCTCATGGCCTCCAAGGAGTAAGAAACC----CTGGACCACCCACCCCAGC
s HiC_scaffold_1 229906324 1176 - 233722169 AATGAATTTGTCTGTATTGGCT--CCAGTTCCATAGGCTGCTTTT---------------GAAGGGGATGTTGCAGCAGtcaatgtctctttccttgacttCA--TACTGTGGACTAGATGTTCAGAAATGATTCTGCCCATGGCAAGTTCAATGGCGCTGTCCAGGCGGACAAGAGGAAG--TACAGTCTGTAAGAATCCCAATTCCACTTTTCAGGAGCAAGATCCCTCCAGCATC--AGATAGTGATGC-GATGTTGAACACATGCTGCAATCCGCTGTGCTCCTCATCATCTTAGCCATAGGCAGCACCCGCTTCGGAGGTGAAG-CCAAAGTATTATCATCCCTACCACTTGTGTCGATG-CCACATACTTGGAACAGGAGAGAACTATGAGAACGATGATTGCTTCGAGATTGTTggggctgggtatggtggcacacatccataatcctagcactcaggaaggatGAGACAGGAGAACTGGAAATTTAAGCCCAGGATGTATCTACTTAGCAACTAAGAGAGACACTTTTTCAAACATATAAGCAGGGGATGGGAATGCAGAAAGGCCCAGtattgcaaattaaaaatatatacatatatcagcaatgccacctgcA-TACCAAGGG-GTGGACACCTGGCCAGTGTCAACTGTTAATAACTTCTGTAATTG--GAGGAATTTAAGGCTGTGGTCTATGCCATCACTGTCTCCCAGAAATT-----ATTCTGAATGCCCCCTCTTCCAGCAAGCTCAGTTAACGTTA-------GCAGTCC------CTGTCCCTGGAGCC-CTGACCCCGCCATGGCCGTGTGCAAGGCTATT-CTGAGCTGAGCAGGACGCTCATTGAATTGGCCTTCCAGCTGCCCATTCCCGGGGTGGCGAGCTTGTGGAGGGTTTGATGAAACATAGATTTAATCTGCCTCTGGGACAAAGGTGTCAAATATAAT---ATCAAGAAGGGGGATGAAGCAAATGTCATGGAGCC--CTGGAAGGCACCTTGAGCTGTTTACAGGAATAGCTGGTTGCCT----------TGGTGACATCTACT-GTCTGCTTTT----CTGGGGTGGGTATTCCTCTGAGTGAATACTGTACTCCGGTTAGGTTATTTCCTGGTATGACCATGAATCTGGCCATAGCAACTGTGGGGGTGGAGGTACTTTATGATTCACAAGATCTCTAAGGAGTCAGAGTCCTGAATTCGAGCCCCAATCCTAGC

a score=33688
s chr3           35895251 450 + 160039680 TCTTATGCCAAACTGTTTT---------CTGATGAAGACAGCATTGTGCTTTATGCAAGAATGGAAACCTCAAAATAATCACCATCAAGCTTCTATGACTTATGGGAAGACAGACTAAGATGGTCCACAG-GTGTAAGATGAAATCCACAATGTCGGAATTATAAATGCTTAGAGTGGCCCAG-ACTAGAAGACAAGCCCAAACCACCAGTAGAAGAATGGAGTACGATATGGTCCAAGATGTATCCTTAAAAGTTTTGTCTCAACCCTCAGTTTGAATTATGAGGATTGATC-----TTCAGTCCAGCCAGCAGAAATTGACTGTGCATTTTCCGTTGTATTTATTGTACAGACTATGTACATTCTAGAAGGTTCCTTTAGTGCTACACTGTTGTACTTTTTGTCCCAGCAATTTGAGGGCGTGCAAATTCCACAAAGTCATCAATAAGGACAGGCCATGCTCCT
s HiC_scaffold_1 99174745 465 - 233722169 TCTAAAgcttaactgtttttttttttccccgatGAAGACAGCATTGTGCTTTATGCAAGAATGGAAACTTCAAAATAATCATCATCAAGCTTCTAAGACTTATGAGAGAATAAACTAGGATGGTCCACAGAGATTAAGATGAAATCCACAACGCTGGAATTATAAATGTTTAGAGCGGCCCAGGACTAGAAGACAAGCCTAAACTACC-TTAGAAGAATGAAATATTATATGGTCCAAAATGTATCCTTAAAAGTTTTATCTCAACGCTCAGTCTGAATAGTGAGGATTGATCTTCAGTTCAGTCCAGCCAGCAGAAACTGACTGTGAATTTTCTGTTGCATTTATTGTACAGAGTATGTACATTCTAGAAGGTTCCTTTAGTGCTACACTGCTGTactttttgtcccagcaattTGAGGGCGTGCAAATTCCACAAAGTCATCAATAAGAACAGGCCATGCTCCT

a score=7688
s chr3           35897462 108 + 160039680 CCTTCTTCATCATAATTGGACA-TGTCATCTGCAATCATTGAACTGAAGTCTAACAGAAGATTCCACGTGTCTTTTGGTATTGATCGTTTATGATGCTCCTATTAAGAT
s HiC_scaffold_1 99175207 109 - 233722169 CCTTCTTCATCAAAATTAGACAATGTCATCTGCAATCATTGTACTGAAGTCTAAAAGAAGATTTCAAGTATCTTTTGGTATTGATCGTTTATGATgttccaacaaaaat

a score=7976
s chr3           35897791 105 + 160039680 CCAACAAAAATTTATTCCATAAGTCTAAGAATTTAAATCTTCCATTAAGCACTAAGTTCCAGTAAGCAATGGCCATTTCTAGATC------------------------TGTAATATTAAAAATAAATT
s HiC_scaffold_1 99175305 129 - 233722169 ccaacaaaaatttattccATAAGTCTAAGAATTTAAATCTTCCATTAAGCACTAAATTCCAGTAAGCAATGGCCATTTCTAGATCTAATCCTTTTTGTCCTGGATTCTttgcaaaattaaaagtaaact

a score=11911
s chr3           35916217 140 + 160039680 ACCTAATCCTTTTTGTCCTGGATTCTTTGCAAAATTAAAAGTAAACTGGTAAAAATCCTTAAATCGTCCTGGTTCTTTCAATTCTTGTTCCATCTTGGGTATTTGGGCCTTTAGTTTTTCTATGCTGTCACATCTACATT
s HiC_scaffold_1 99175387 140 - 233722169 ATCTAATCCTTTTTGTCCTGGATTCTttgcaaaattaaaagtaaactgGTAAAAATCCTTAAATCGTCCTGGTTCTTTCAATTCTTGTTCCATCTTGGGTATTTGAGCCTTTAGCTTGTCTATGCTGTCGCATCCTAATT

a score=12900
s chr3           35918997 176 + 160039680 CACCCTAACTCTGTCATGCCATCCATGAACTCCTGTTTGGAGAACTCGCACTGTGTGGCCGCCCTGAACTTCCATGCAATGATCAACACACTGATGCTGGCTGGATCGAGGGCCAGATCATCACAGAACTGCTGTATACCATCTATTCCAATTTTATTTTCATCCTGAGGGTCTTT
s HiC_scaffold_1 99175517 176 - 233722169 CATCCTAATTTTGCCATGCCGTGCATGAACTCCTGCTTGGAGAATTCATATTGTGTCGCTGCTCTGAACTTCCATGCAATGATCAAAACACTAATTCTGGCCAGATCAAGTGACAGGTCATCACAGAACTGCTGTatgccatctattccaattttattttcatcttgagGATCTTT

a score=9001
s chr3           35920968 160 + 160039680 ACCTTTGTATCTAGTGTACAGTTGCTCTAACTTCTTCCTGTCCAACGATCCTTTTACACTCT-CCCGTATATAAAGTTCTGGATTTTGAAAAAAA-TTATC-TGTTGCAAC-ATCTAACTTCCAGTCATTTTGAGAAAGACAACTT-ACTGCAG-TTTTCTCACTA
s HiC_scaffold_1 99175687 165 - 233722169 ATCTTTGTATCTATTGTATAGTTGTTCTAACTTCTTCCTGTCCAATGATCC-TTTACACTTTATTCATATATAGAGTTATGATTTTTGGAAAAGATTTATCTTGTTGCAACTTTCTAACTTCCAGACATTTTGAGAAAGACAACTTCACTGGAGTTTTTTTCACTA

a score=9315
s chr3           36018815 248 + 160039680 CTCTCAGTTCCGACTTACTTGCTTAATTTATTTGACAATGATTTTCTAATTTTCACTTCCGCTAGGTAGAGCTGCTTATAGTTTTCCATTTCTATTTGATTACAATCAACTTGACTTTTCATCTTAGAGAATTCAGACTCCAGGTCCTTTATTCTGAGCTCCATCTGAGTTCGCACTGAAGCGTTCTGTTTCTGTCTTAACTTCTCTAGCTTGTCTTCATACGCTGCTTGTGTCTACAGCAAATTGAA
s HiC_scaffold_1 66297843 231 - 233722169 CTCTCATTTGC------CTTGTTTAGCTTACTAGACAGTGAATTTctagttttgaatttttctgtatAGAGTTGCTTATATTTTTCAAGTTGTCTTTTATTGGACTCTTCTTGGGTTTTCATTTTAGAGAGCTCCAATTCCAGGTTCTTAATTCTGAGTTCCATGTGATTTTTCATTGAAGCAT--TGTTACTCTCTCAATTGCTC-------TCTTGAGATGCTCCTTGTGTCCGTA--AAAATGAA

a score=3573
s chr3           36121908 103 + 160039680 GACTTGATG---TAGTAACAGCATTGTTCTCCCAGGAATAAGCAGGTGCCTCCTTCATCTGCAGTAAGGAGATCTAGTGCTCAGCTCTTCTGCAA------TGCAACCTAGG
s HiC_scaffold_1 72848374 112 - 233722169 GACTTGCTGGCATAGTAAAAGCATTCTTCTCCTAGGAAAAGGCAAGTTCCCCCATACTGGGCTGTTAGGAAATCTAAAGCTCTGTAATTTTGGAGAATGACTGCAGCCCAAG

a score=24742
s chr3           36164206 1847 + 160039680 GAGAACCTGCTATAACGGGCACAACCCATTTCTGACAGCTGGCAACAGCAAAAGCTTTACTCCCAGGAGAGATCGGGCACAAGAGATGGCTCACAAAAACCCTCAGGTGACACCAGTTACTTGTGAGGAGCCGTGCGCTTCAGTCATTAAACAGCAGAGTCAGTTTTTGAAGCAGACCCCTTCTTTCAAAGATAATTTGGAAAATCCACAGAGGGTTCTAGTTAATTCTTCAACTACCGACTTCAACAA-TTTCAAGTGTAGCTTTGGGCTGAGCTTTCATTCAAACATTTTTGTAGATGGGGAACTTAAAAATGAAGGAAAACATTCTAAATGTAATCAATTTGAGAACTCCATCATGAAAAATTCGTTAGTATATAATCAACAAATAGGTCTTCCATGTGCCAAAACACAGAA-------TTCCCATAAGTATGGCAGATTTTTTTCACATCCGGTATCACTGAACCAAAATTCGAGTACAGATATTTTGGAAATTCAGTATATATGTAAAGAAAATAGGAAGGCCTTCACTGAGGAGTCCAGCTTAAGTAATCTTCAGGACGTGTATATCGGAGAGACAGTTTATGAGGGTAATGAAAATAATAGTGACTTAAACCAAGAGTCAAATCCTGCCAGTCATCAGTCTGCTCAAT------------TGTACAAATGTTACAAATGTGACACAGTCTTTCATCAGTACTCGGAACTTATTATCCATCAGTACATCCATATTCAAGATCAGATTTCCAAG-------GATATGGA--------TTGC----GACACAGCTTTCAGTCAAAGTTCAAGCCTTACgagaagtcaagctggagaaaaaccctacaaatgtaaggaatgcggcaaagcctttacctactgttcaagccttaggcaacatcatagaattcattctggagtcaaacagcacaaatgtaaagactgtggcaaagccttctaccataaatcac---------------tcctcacgcaacaccagagcatccacgctggaaagaaaccctact--------gctgtaaat---tttgtggcaaagcttt---------caatcaa------------------------------agatcgactg-ttactcagcaccagagaatc------caca---ctggagagaggccctaccattgtaa----agattg-----cggcaaa-gcatttcatcaaagatcgagc---cttagtc-tgcaccagagagttcatacgggagaaaagccct-acaaatgca-aagactgcggcaaagc-------cttcaaccgcaactcactcctca--------------ctcagcaccagagaattcac-------actggagagaggccctaccattgtaaagactgtggcaaaacttttaataaaaagtcaagccttactcaacaccagagaatccatactggagagaagccctattcttgtaaagactgtggcaaagcttttaatcaaagatcaagcctcagcctacaccagagaggccatactggggagaaacccaataaatgtaatgaatgtggcaaagcctttaaccgtgtatttttccttactcaacatcagaaaattcatactggagagaaggcttaccactgtaaagactgtggcaaagcatttaagcagaggtccagccttactcagcaccagagggtacacactggagacaagccctatcattgtaagcactgtggcaaagcttttacccagaggtccagctttacacgacaccagaggatccacactggagagaagc-cctacaagtgtcaagactgtgacaaagccttcagccggaacttacttctcattcaacaccagagaattcacacaggagagaagccttaccattgtcaagattgtggcagagcgtttaatcaaagg-tcaagccttactcaacatcagagggttcacactggggacaagcccttctgctgtaaagactgtggcaaggctttta
s HiC_scaffold_1 40645451 1883 - 233722169 GAAGACTTTTTAGGATGCCCAGAAACAGTGGGTGACAGTGATGTAGAACAGAAGCTTCACTGCTGAAGAGAATCAAAAACGCATAACGTCTCAGAAAACATCTGACTGTACAGCACTTTC-----AGTGATCATGT--TTCTATAAATAAGCATTCACATCAAATCATTAAATGA--CTTTTCTCTCAGTGGAAATTTGGGAAAGTCAAAAGTGGGTGTAGTCCATGATTCAATTAATTACTTGAACAACTTTCAAATATAGCT--GAGAAAAATTGTTATTCAAACATTTCGGCAGACAAG-AGCTGGAAAATAATGAACAAAGTTCTACATGTGATCAATTTGGAATTTCTTTTATGGGAAGTTC-------CACaaatagcagatatgcatttcctgtgctaaaatataaaacaaacaatttttataAGTACAATAA----TTATCAAAGCCAG---------------------ATATAGATATG-------------ACCTATGTAATGAAAATGGGAAGGTTTTTGGTGAGAGTGTTACCCTACATAATTATCAGGCTATTTGAATTGGGCAGAAAACATATCAGTGTAATTAAATTCATGAAATCCTCCTCCAACGCTGAAATCCTAGTAAACATCAGCGTATTCATTCTCCAGAGAACACTTGCAAATGTGATAAACATGAGA-AATCTTtggtcagtgctcaaaaatcactATCTACAAGACTA--CatgtcagacagaagctttataaGTACATAAGACATGGAAAATGTCTTTGCTGAGGACTCTATCTTTAATCAAGAtc---------agagaattcatactagaaAGAAATCCTATAAATGTACAGattgtggcaaagctttta-atgTTTCTGAACCCCTATTC-ACACCAGGTAATTTATAC-----TCTTGCAGCAAAATTG---AATCTGGGACAGGGGTGGCACCCACGGAACTCAGGAGGCAGTGAACAGCCTTATTTTACACCAGTG-GTCCCGGCAGGAATAATTTCCAACCAAAGCCAGGCAGCAAATGTGTGTGAGGCAGTATTTTTATGAGGCATAAGCAGGGGTGACAAAGGTGAGAGAGGCAGCCTGGCAGATCTTCTGATTAGCCAGCAGGGTGAGGTCATTGGTCACAGGGCTGGATTAAGGTCCATCAGTTACAAGGCTAGACTGATAACCACCAAGTGCGTACAGTCAAATATCTTGTATATTTGGTTATGTTCCCATGATTACAAGGGTCAAGAAAGCAGTCACAGAGCCATGAAACAGCTGCAGAGCTAGGCAGCTTCAAAGAGAACAGAGtcataaaaagaacaatttttctTAGTAC---AGCTTTCCCTTTCAGTCCTGGCGAGAAACATTACCACTATAAAGAACATGACAGAA-----------------------ACACAACCCCTGAGAATTCATACTGATGAAGATCCCTACAAAGGTAAACA-TGTGTCAAAACCTTTTAGCAAAACTAGAACTTTACTAAGCAACAGAGAGGCAATACCggagagaaacaaagcaagtatGAAAATTGT-GCAATGTCTAAAAATA-----------TTACTCAGCaccagagaattcatactgaaGACTCACACTACAAAGGTAAAGAGTAAAGTAAAGCCTTTGGCCAATGTTGAACCCTAACTGAACATCAGAGAATTAATCACTCAAAGAAACCCTAACAATGTAAAGAAAGCAGTAAATCCGGTAAATATTGTTCAAAGCTTATTGGACACCAGAGAATACATACTGGACAGCCCCGCCTACCAAAGTAAAGACTGTGACAAAGTCTTTGGTCAGTATTTAAATCTTAGACACCACCACAGAAGTCATGTTAGATAAAAACCCTACCA--ATAAAGACTTTGGAAAAGCCTCCGATCATTTTCTCAGGTTGTATTCAacatcagagaattcatact-gggaCAA--CTCTATGAATTACAGAATATGAGAAGGTTTTTA

a score=5672
s chr3            36189134 288 + 160039680 GGCTTTGTCCACTGATGAATTTGTAGATGAATGGACTACTAGGAAATGGAGCACGATTGGGAGAAGTAGGTTACTGGCATAGGACTTT-------CCCCAGATAGCTTCTGTCTGTGTACATGCGTGTGACCTGCAATGAGGCAAGCCACTGCTCTACCAATGGTCATGTCAC-AGTGTTCTGCTTTCTTGCCCAAAGGCCCGGAAGTAACAG--CCAAGTGGCCACAGACTGCAATCTCTGAAGTCATATGCAAACACTAATCCTTGTCCTTCCAAATTGTCAGTACCAGATATTTT
s HiC_scaffold_1 207940184 281 - 233722169 GGATCAGTTCATTGATGACTTCATAGCTAAATGTGCCATTCAGAGGTAGGACCCAGCTGGAGGAAGTAGGTAACTGGTGTATGACTTTGAAGGCCCCCCCGCCAATCTTT-TCTGGATGC-----TATGA-----GATGAGGAAA---ATTCCTCTCCCACACCTGACACCATGAGCATTTTGGCTTCTCGAC---AGGCCTAGAAACACCAGAACTAAGtgatcatgaactgaaacttctgaaaccatgagccaaaataagtcttcCCTACTTTAAATTGGTTTTCCCAAGTAGTTT

a score=5349
s chr3           36189141 299 + 160039680 TCCACTGATGAATTTGTAGATGAATGGACTACTAGGAAATGGAGCACGATTGGGAGAAGTAGGTTACTGGCATAGGACTTTCCCCAGATAGCTTCTGTCTGTG----------TACATGCGTGTGACCTGCAATGAGGCAAGCCACTGCTCTACCAATGGTCATGTCACAGTGTTCTGCTTTCTTGCCCAAAGGCCCGGAAGTAAC--------AGCCAAGTGGCCACAGACTGCAATCTCTGAAGTCATATGCAAACACTAATCCTTGTCCTTCCAAATTGTCAGTACCAGATATTTTTGTCGAGTGACAAATAGT
s HiC_scaffold_1 67784400 288 - 233722169 TCCATTGATCCGCTAATAGCTGAACGGGCTACCAAGAACTGGAGCCTATTTGGAGGAAATAGGTTACTGG---GGGATTTTTGAAAGGGTGTGTCTTTTCCTGGGgtctttcctctctgcttcccatctGCCATGAGGCAGACAACTTTCCTCC--------------------TCCACTCTCT--CCCA----CCCCGATGTATCTACCTTGGAGTCAGCCGACTGCATACTGGAACCTCTGACACCGTAAGCCGaagcaaacctctcctccttgaaGCTGTGTGTGCCAGGTATTCTATCCCAGCAACAGAAAGT

a score=5992
s chr3           37630368 109 + 160039680 ATTTTTTTTTAATAGCACAAACAC------TTATTTACTAACCAAAGAAACCATCCTTGTTAAACCAGCACTTTGAAATACTCGCATGTAAAATACTTGTGGTGAAGATAATTGA
s HiC_scaffold_1 27862581 112 - 233722169 attatttttta---gcataaatatatttatttatttaccaacCAAAGAGATGATCCTGGTTAAATCAACACTTTGAAATAGTTTCATGTGAAATGCTTGTGATAAAGGTAATTGA

a score=6705
s chr3           37630369 409 + 160039680 TTTTTTTTTAATAGCACAAACAC--TTATTTACTAACCAAAGAAACCATCCTTGTTAAACCAGCACTTTGAAATACTCGCATGTAAAATACTTGTGGTGAAGATAATTGATGCCAATAAGGGATGTAAGCAGCGGTGTGGAATGGCGCGTGCTTGCAGAGGTGTAGAATGGCGTGTGCCCACAGCGGGTGTGGAATGGCGCGAGCTCGCAGCTAATTTCCGCTTCACTGTGTGGTGA------GTTTACCTT--TTGCTGCCACAGACTCAGGTACAAGGGCCGTTGT-------------------TGACTCTCC-TCTCTCAGTTCCCTCGTCACAGC-CCTTCTTTCCTGCCCCACGCTAGGTGTCTGCCCAGCACACAGCTGAACAGCTGCATGCAGACTTGCCATCAGCTACAGGTTCTTCAAACTTGTCTCCCA
s HiC_scaffold_1 10520929 381 - 233722169 ttatttcttgTTAGCATAAACATATTTACTTACTAACCAAACAGATGATCCTACTAAAATCAACACTTTGAAATAGTTGCATGTAAAATGCTTGTGATAAAGATAATTGACCAAAGTAATGACCAAAAAAAG-GATACAGAGATTTGCTTACT------------GAACTGAGTTTATTCAT---------------------TCTCAAAGCTAATTTCTGT----CCAGGTGATGATGGaatatttattctgcttttttttataGACTGGAGTACAGGGGACATTGTTCATGACACAATCCACAACTAACTTTCCATCTTGCAATTTTCTGGTGATTGTGCTTTCCTTCCCATCCTACTGCTGGTGACCCTCTG--------------AGTTATTTG-------GCAGTTAGCTGCAGTTTCTTGAAACTTCTTGCCCA

a score=5278
s chr3           37802540 111 + 160039680 GGGAGTGTTAGGCTACTACTCATTCAGATGTT-----------------------GACACAGCCTCTCTCCTCTCTGTCACCTTCTGATGTGCAGGTGATGCAGCAGCCACACCTGTAACTCCTCTAGGGGGAG
s HiC_scaffold_1 39210487 134 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=18524
s chr3            37959573 549 + 160039680 TAATCTCTCTCGAGTCCTGGTTATTTCCTTTTTGTACATTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTTCTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCCTT------TGTCATTTTGGTGAGTTACTGGAA--GATGGCTACTGTGGTAG
s HiC_scaffold_1 214914739 529 - 233722169 tagtctctctct--------ctctttttttttcatctactATGCTGTGGGTTCATAGGGAATAGATTTAGGTATTTCAGGCTTCTTTCCATCAATTCTGACAACATGTGCTTCACTGAGCAGATCAGACTGGTGCATCTGTTGAACCCAGGTAAGTTCCTCTTGGattttctaccttttattttaattttgctttatgtGTTTCAAGTAACTATTTTGACTCCT--AGTGCTTCACATGATAAATATACACATTTAGTCACCTGGCAAATATCTTGCCCTTAATCTGATGGTTTACAACAATG---------TGCTG-------CTATAGAGGCTTCCAGTTTTGCACATTAATATTTATAGGgactttctttttgaacagtatCTATTCCCTTAATCTCTAAATTATCGCCTTTCTTGTAGATTCACATATATGTGAACAGAGGAAAAACCTCATATTTCCTAAAAGGCTTAGAAGACAC--AATCAATAGCTCTCTTTACCCTCTTCATGTGTGTCATTTTGGCAGGTTACCAGAGATGATGGATCTTCTGAGAG

a score=26813
s chr3            37959611 519 + 160039680 TTAGGCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTG----GGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTT-CTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTT-CCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCC------TTTGTCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGGTAGAAAGAGTG
s HiC_scaffold_1 215432005 527 - 233722169 ttaTGCTGTGAATTTATAGTGAATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAGAACCAATCCC-TTGATGTCTACGATATCACTCT--TTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAAAGGTTG

a score=16615
s chr3            37959615 377 + 160039680 GCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTT-CTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTG
s HiC_scaffold_1 181453998 355 - 233722169 gccctgATTTCTTG-GGAGTGCAGTCCAGCAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAGGGCGGGCTGGTGCTTTAGTTGAACCCAGG---------------CTTCCTTCTTTTTCAGATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGCAAGTGTCTTACCCTTTACTTGCTTGTTTCCAGCTGTGCCAGCGGCATGCTGGGTAACACTGGACACTCTTCCTGTTTTGCCATGGTGACATTTGTGTGACATTCTTTTTTGCACAGTCCC-------TTGATGTCTACAAAATCACTCTTTttg

a score=26228
s chr3            37959615 511 + 160039680 GCCATGAATTCGTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTT-TCTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCTTGTAGATTCTCATGTATGTGTTGAAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAATGAGTGCCCCTCTTCTTTCCCTTTG------TCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGGTAGAAAG
s HiC_scaffold_1 172799160 517 - 233722169 GCCATAAATTCAAAGGGAATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGT-TCACAAAGCTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTACCCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctttccctttgtcTTCATCATTTTGGCAAATTACTGGAAGATGGTGGTTCTGGCCAAAAG

a score=26058
s chr3           37959630 505 + 160039680 GGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCCCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCCTTTTCTTCTGTTCGTTCTCTTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGTTTGATGTGCTCAATCTGCACATTAATCCTCTTGGCCAAAATCTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACAGCATGCTGGATGACATTGTAGACTCTTCTGGTTTT-CTGTGGTAACACTTACGGGGCATTCTTTTTTGAACAGTACCCATTTCGTTGATGTCTACACTATCACCCTTCT-TGTAGATTCTCATGTATGTGTTG--AAAGGAACAACTCCATGTTTCCTAAAAGACCTAGAAAACATAGAA-TGAGTGCCCCTCTTCTTTCCC------TTTGTCATTTTGGTGAGTTACTGGAAGATGGCTACTGTGGTAGAAAGAGTGAGACT
s HiC_scaffold_1 59695643 507 - 233722169 GGAAAAGGTTCTGACAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAACGC--TGAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACTTGTTTACTG----TAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgtTTGTCATTTTGGCAAATTACTGGAAGACAG---TGGTTGCAGATAAGCTGAGGCT

a score=5362
s chr3            37966907 227 + 160039680 TGGTCTGAAATGCTACAAAATTTAAAATGTTT-GAGTGGACACATTATGCTCCAGGTATCAAGTCCTACCCCTGACCTTCTGGGATGGGTTTCCATTAGAATCTAGGTGTTATTGAATACTGTATAAAGGCACTTCCAGATTGTGTGTGAGGG-----CAGAGAGCAGATAGCAGTGGATTTCCTGTTGAGACTGAGGGTCTATGTTCCAAAGATCTCTCATTACATTTGTGC
s HiC_scaffold_1 168551712 227 - 233722169 TAATCTGAagtgctccaaaatctgaaatgttttgaCCACGGACATAATGCCACAAATGGAAGATTCTGCATCTGATTTCCTGTGACAGGTCACAGTTAAAATGCAGGTGCACTAAAATGTTGTATGAAACTACTCCCAGGCTATGTGTGCAGGTTGTATATGAAGCATACA----TGACTTTTATATTTAGACATGAGTCCCATCTAC--AGAATACATCATTATACATATGC

a score=8123
s chr3           37995101 130 + 160039680 GGGATTATTAGGCTACTAATCATTTAGATGTTCATAGGTCAGAACACTGAGTGTAGACATAGCCTCTCTCCTCTCTGCCACCTACTACTGTACATGTGACACAGCAGCCACATCTGCAACACCTTGAGGG
s HiC_scaffold_1 39210487 130 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGG

a score=18822
s chr3            38107425 514 + 160039680 TTTCTTTGTGTACATTAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGA
s HiC_scaffold_1 214914755 493 - 233722169 ttttttttcatctactATGCTGTGGGTTCATAGGGAATAGATTTAGGTATTTCAGGCTTCTTTCCATCAATTCTGACAACATGTGCTTCACTGAGCAGATCAGACTGGTGCATCTGTTGAACCCAGGTAAGTTCCTCTTGGattttctaccttttattttaattttgctttatgtGTTTCAAGTAACTATTTTGACTCCT--AGTGCTTCACATGATAAATATACACATTTAGTCACCTGGCAAATATCTTGCCCTTAATCTGATGGTTTACAACAATG---------TGCTG-------CTATAGAGGCTTCCAGTTTTGC-ACATTAATATTTATAGGgactttctttttgaacagtatCTATTCCCTTAATCTCTAAATTATCGCCTTTCTTGTAGATTCACATATATGTGAACAGAGGAAAAACCTCATATTTCCTAAAAGGCTTAGAAGACACAATC--AATAGCTCTCTTTACCCTCTTCATGTGTGTCATTTTGGCAGGTTACCAGA

a score=30126
s chr3            38107439 537 + 160039680 TTAGGCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTG----GGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTAT-CCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAA----------TCTCAACCAGTATTAA
s HiC_scaffold_1 215432005 548 - 233722169 ttaTGCTGTGAATTTATAGTGAATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAG-AACCAATCCCTTGATGTCTACGATATCACTCT--TTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAAAGGTTGTTTCCTCTTAAACAATACTAA

a score=19404
s chr3            38107443 488 + 160039680 GCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAA---------------------------------------------------------------------------------------------------------------------------------------------------------TATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAG
s HiC_scaffold_1 181453998 615 - 233722169 gccctgATTTCTTG-GGAGTGCAGTCCAGCAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAGGGCGGGCTGGTGCTTTAGTTGAACCCAGG---------------CTTCCTTCTTTTTCAGATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGCAAGTGTCTTACCCTTTACTTGCTTGTTTCCAGCTGTGCCAGCGGCATGCTGGGTAACACTGGACACTCTTCCTGTTTTGCCATGGTGACATTTGTGTGACATTCTTTTTTGCACAG-------TCCCTTGATGTCTACAAAATCACTCTTTttggtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtggtaccaggaatcgaactcacgacctcaagcttgccaggcaggcgcttgtgctgctgagctaaactgcTGTCACCCTGTTTGTAGAATTGCATGTCTGTGGCCAAGGGGACAAC-CCATGATT--TAAAAGGCCTAGAGAACACACGCCAGGTTCCCCTCCTCTTTGCCTTTGTGTTCATCATTTTGGCAAG

a score=29397
s chr3            38107443 517 + 160039680 GCCATGAATTCGTATGGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCGCATGTATGTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGTACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGGCTGCGGTGGCCGAAA
s HiC_scaffold_1 172799160 516 - 233722169 GCCATAAATTCAAAGGGAATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGT-TCACAAAGCTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTACCCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctttccctttgtcTTCATCATTTTGGCAAATTACTGGAAGATGGTGGTTCTGGCCAAAA

a score=28734
s chr3           38107458 493 + 160039680 GGAATGGTCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCCGCTTCAGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATGTGATCAATCCGCACATTGATCCTCTTGGCCAGAATTTTGCCCTTAACTTGCTTGTTGACAATGATGCCCACGGCATGCTGGGTGACATTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCT-TGTAGATTCGCATGTAT--GTGGCCAAAGGAACAACGCCATGTATCCTAAAAGGCCTAGAGAACATGT-ACCGGGTGCCTCTCCTTTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGA---TGGCTGCGG
s HiC_scaffold_1 59695643 494 - 233722169 GGAAAAGGTTCTGACAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAACGCT--GAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACTTGTTTACTG----TAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgtTTGTCATTTTGGCAAATTACTGGAAGACAGTGGTTGCAG

a score=11549
s chr3           38107783 162 + 160039680 TGCCCATTCCCTTGATGTCTACAATA-TCACCCTTCTTGTAGATTCGCATGTATGTGG-CCAAAGGAACAACGCCATGTATCCTAAAA-GGCCTAGAGAACATGTACCGGGTGCCTCTCCT-TTTTCCCTTTGTGTTCGTCATTTTGACGAGTTACTGGAAGATGG
s HiC_scaffold_1 52692592 166 - 233722169 TACCCATTCCCTTGATGTCTACAAAAATCACCCTTTTTGTAGATTCGCATGTATGTGGGCCAAAGGAACAACTCCATGTTTTCTAAAAAGGCCTAGAGAACGTATACTGGGTTCCCCTCCTCTTTTCCCTTTGTGTTCGTCATTTTGGCGAATTACTGGAAAATGG

a score=6963
s chr3            38254011 136 + 160039680 AGCTGAATAGCTTCCTCTCCAGCCACCAGCAGTTATAAACTCATTGACATAGTTTGTGAAGGCAAGCTTCATGCTTTCTATAAGAAGCGCATAGTCACAGAAGTAGATGCTGATGTCCTGGGTGAAGAGTGGAAGG
s HiC_scaffold_1 154206193 135 - 233722169 AGCTGAACATCTCCTTCCCC-GCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGG

a score=12953
s chr3            38254144 412 + 160039680 AGGCTTATATAGTCCAAATCAAGAGCACGAATAACAAGCAAGGTCTTTCCATGAGGCAACATATCTTGACCCATGGCAGAATGTGCTTGCTATTGAGTAAGGAGCATTCTTGCTGCAGACCAAAGGGAAT--GAGAGGAGAAATGCAAGTTTGTTTACTGATGCGTTGTGGGTGTCAATTAGAGTGTTCTCAATTTGGTTCTTaagaaaagaaaagaa-----------------------------------------------------------------------aagaaaagaaaaaaaaaag---------aaaaga------aaagaaaggaaaagaaaaaaaagaggagaaa------------------------ataaaGAGGGAAGGATATTCCTGGGCTAACAGACACTACCAT-CCTTGGTGGTCAGGGCCCAGAAGAGCTACCAGAACCCTCAGACCTTTCAG--TCTCTGAAGAAGATGATGTCTACCAAGAAGCTGTGAGAAAGCCCTTAA
s HiC_scaffold_1 154206729 527 - 233722169 AGGGTTATGTGGTCCGGATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAGCAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTtggttattgtaaaaaaaggTGAGGTTTATGCTCTTCACGTTTAGTTTTTGTTGATGACTTACAGGTGTTTTTTCCTTTACGGTGTTTGCATATTAACCAGTGTATTTTACAAGTACCCTTGTAAATGATCATTTCAATGTTACAAAGGAAATTACTGAACTGAAATACTTCTGTTTACATTTGTCTCTTCTAAGGAGAGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGCGCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAA

a score=11036
s chr3            38254561 270 + 160039680 AAGAATCTCAGAACCAAAGCGTCTG-GATTCTGTGTCTTGTTCGTCCACGTGTCCTGCAACACAAACATCAACATATTGCTCTGAAGAAACAACACACTAAGAAAAATCAGGAGGAAG-GACAGAATATGCTTAACTTTTGGCCAAGAGAATGA-----------------------------------------------------------------------------------------------AGGAAGCCAAAGAAAACCACCAGGAACAGATCACCCAGAGATGCAGGCTGTC--CTCAGAGACCATCCACTTCTAAGTCTGAATCCAGGCAATCGT-AAGTCTTTAAGGGTAACAAATAAA
s HiC_scaffold_1 154208418 368 - 233722169 AAGAAACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCGtactaagaaaaacaaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGGTGAGTGAGATAAGGGAGGCCATGAAACCAGAATGGCTAATTTGCTGTTTTCACTGGAATAAAAGTCTGACTTCTTCTGTACTTCTGTTTTTTAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAGAAATAAAATGCTTAA--GTAACAAATAAA

a score=4990
s chr3           38383117 188 + 160039680 gctgtgagtcagatatggtttgttctccaaacattcacttgggggaggcgtggctcccattacaatagtactgcgaggtggtgggacctttaagaggtgggctctggtGGGAGATGGCTGAGT-----CTTTCTGTG--AAAGGATTAATGCTGATCTTGCCCAGTGGGTTAGGTGTCACAGGAGTGAATTCATT
s HiC_scaffold_1 32616114 172 - 233722169 GCTGTGGTTGGGATGTGGC-----CTCCATGTGTCCACC----AGAGGTGT--------TTATGGTGGTGCGTAGAGGTGGTGGGAACT------GGAAGGACCTTGTGGGGAGCAGTTGGGTGGTGACTGCCCGTGCAAAGGGATTAATGCTGGTCTCAGACAGTGGGTTAGATCTCACAGGAGTGGATTAGTT

a score=4768
s chr3            38386329 283 + 160039680 gtaacttaaaggaggagagatttattttagctcctggtttcagagcatttagc--ctgcagttactgagtcccatggatctgcaccaatcatggtagtgtcagtaaaagcctggagcagagagtcacagttttatcaataggtacatgcagcagagtgtcatgGGTAGCATCACTGGGAGTTGATTGCAGACATGAATCAAAGAAAAAAGAAAGCAAGATATATAGCTTCCAAGAACATTCTCCCAGCAACCTGTTTCCTCCAACCCAACTCCATCCTCCACAAC
s HiC_scaffold_1 160799442 227 - 233722169 GTAAATTATAGGCGAGTGGTTctattttggctcctggtttcagaggtttcagtttctGC-----CTgggt-----ggctccaaagcagaaatggcaa-----------------ggCAGAGATTTATAGCCTAGCAAAT---------CTGCTGA-----ATGGATA-------TAGAAGTAGA---AAGATGTG-------GAAAGAGCCAAAGGAAATATGTACACTTCAACAGCAGGTTCCCAGCAATCTGCTTCCTCCAACTCAGCCCCACCCCCCACAGC

a score=4143
s chr3           38455070 205 + 160039680 GCTGCCACCCTCATGGCAGTGCGTCCAAAT---TGGTCGGCATGATTGGGATCAGCACCGTGTTCCAGCAAAACCTGCACTACATCCACATGTCCCTCCTGGGCTGCGATGCAGAGGGCGGTG----------GCT-------------------CCTTGGTTGCATGT-------------GTGGTCCACCACAGCGCCATGCTCTATCAGAAGCTGCACCACTTTGACATGG---CCCTGCCAGGCTGCAG
s HiC_scaffold_1 60165495 253 - 233722169 GCTGCCAACATCAGGGGGCTCCAGCCCACTGTCCGGGCTGCGTAGTTGGGGTCAGCACCCCACTCCAGCAGCAGCCGCACCACAGCCTCATGTCCATGCTGGACGGCGGCCATCAGGGCTGTGATGTCCAGCAGCTCATctctgctgcctcccagcccTGGCTGCTTGCCGGAGGGGCTGTGATGGTCCACAAAGGCACCGGCTTCCAGGAGCAGCTTTACCACACCCAGGTGGCCACCCCGAGAGGCCACAG

a score=5564
s chr3            38938350 255 + 160039680 CACAAGTGGAAAATTCTGCAATCGCCCCT-----GGGAAGCAGTCATGACATAGGCAAACAG-AAAATATGTCGTCAAATTACCTTCAG-CTGTGTGTAGAAGGTACATATGAAACAAAAGTGAATGTGGTATTTAGACTTGAGTTTCTTACCTCAAATATGTCAATATAGTCTTTCTTACAAATGTTCC-----------CAAATCTAGAAGCAGCAGACTGCCAGGAAATCCCTGACCCCAGGCTTCTAGAGTAAGCATTGCTCAGTCTAT
s HiC_scaffold_1 216639913 265 - 233722169 CACAAGTAGAAAATGTGACACCTGAACCTTCTTGACGTCACAGTCAAAACAAAGGCACCCCCCAAAATACTGGGTAAAATTACCTTTGGACTGTGTATATAAGGTATATATGAAACATAAGTTGATTTTGCGTTTAGACTTTGGTCTTATCTCTAAAATGTATCA--------TTTCATGCAAATATTCCTtttcattatgtatatgtaaacaAATGAGAAATCCAAAAGACTTCTGGTCTCAAGAATTTTGGATAAGGGATATGCAACCTGT

a score=3695
s chr3            38983861 118 + 160039680 TGCAGCTGCCCAGAGGGCTTCACTGGGAGAGCCTGTGAGAGAGACATCAATGAATGTTTGCCCAGCCCTTGCAAGCATGGGGCCGTCTGTCAAAATTTCCCAGGGGGATTCAACTGCG
s HiC_scaffold_1 107970612 118 - 233722169 TGCCAGTGCCCACTGGGGTACACGGGAAGCTACTGTGAGCAGCAGCTAGATGAATGTGCATCCAATCCTTGCAAGCATGGTGCTACCTGCACTGATTTCATTGGTGGATACAGATGTG

a score=9082
s chr3            39217562 285 + 160039680 CCCAGAGACCACATGCTTGCCATCCAGCCATTCAGTCTTGGCAGTGCAGATAAAAGACTGGGAACCGTTTGTGTTTGGTCCAGCATTTGCCATGGACAAGATGCCAGGACCTGTATGCTTCAGGATGAAGTTCTCATCCTCAAATTTCTCTC-GTAGCTGGACCTGCCGCCAGTGCCATTATGGCATGTAAACTCAGCACCCTGGCACATGAATCCTGGAATAATTCTGTGAAAGGAGGAACCCTTATAGCCAAATCCTTTCTCTCCAGTGCTCAAGGTGAAAGAA
s HiC_scaffold_1 151294489 274 - 233722169 CCCAAACACCATATGCTTGCCCTTCAGCCTGTCTGTCTTGTCAGAGGTCTGGAAGAACTGGGAGCCGTTGCTATTTGG-----------CCATGGCGAGGAGGTCTAGTCCTGTGTGTTTAAGGATAAAGTTTTCGTCATCAAACGTCTTCCAGGAGATGGACTTGCC-CCAGTGGCACTGTGGTTTGTGAAATTCCCACCCTGGCACATGAACTGGTGGATGTTGCGGTGGAAGCTACTTCCCCTGAAGCCATAGCCTTTTCCGTGGGCACTCAGGCTGCAGAAA

a score=6373
s chr3           39799631 97 + 160039680 AGTGTTAGGCTACTAATCATTCAGATGTTCACAGGTCAGAACACTAAGCTTAGACATAGCTTCTCTTCTCTCTGCCACCTACTGACTTACATGTGAC
s HiC_scaffold_1 39210490 97 - 233722169 AGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGAC

a score=11426
s chr3           40658873 324 + 160039680 AAGCAGGAGGAGTGTGGAGCATTGAT--------------GCTGTTC-----TCATGGACTTGTAGGTGTTGGAGAACT---CACCCAGGTAGTGGTCAGTCATGTGTAGCTTGATTTCCACCTGGATGAAAGTCTTGCTGTTGTACACACCCACATCATACTGCC-ACCATCCTGAGCAGGATGAGCAAGTCCTTCAAGTGGGTCTTCACCACTTGGGGCTCCTTCATCAGTGGTGCCTCCTTCTTGACTTTTCTCAGGTGTTTGAGTAGTGAGTGCTGCTTCCAATACAAGGTATGATTCAGGTCCTGCCTCTGGTGGGTGCTGTCCAACCGTACCAGCTGCTCG
s HiC_scaffold_1 62610635 342 - 233722169 AGGAAGGTGAAACATGAAGCATGGATAGCTGCAGTGCCAGGCTGACCATGCTTCGTGGGCTTGTAAGTGATGGAGAACTACTTGCCCAGGTAATGGCCGATCATGTCAGGCTTGATCACCAGCTGGTTGAAGGTCTTGCCATGGTAGATGCCCAC--CATGCTGCCTGCTGTCTCCGGCAGGATGATCATGTCCTAAAGGTGTGTCTTCACCACCTTTGGCTGCTCCATGAGTGGTGCTTCCTTTTTGGCTTTGCACAAGAGCTCCAGCAGCCAG---TGCTTCCACCACAGGCCTCAGTTCAGCAGCTGCCACTGCCATGCACTGTAGAGCTCAATCAGCTGTCTG

a score=8377
s chr3           40730048 150 + 160039680 TTATGACTCCTAGGCATAAAACAGCTTTGGCCACCAAACCCAGGCATCAAGCTAGGATGAACAAAGGACTGCCATCTGCCATGTCCCTGGCTGATATAAGAACACCAACCACCACCAACAAGGTATTTCTTTGCCCTTGCTCGGGGAGGT
s HiC_scaffold_1 37912099 144 - 233722169 tcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC--AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAAT----AACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGgggt

a score=6288
s chr3           40780042 162 + 160039680 TGCTTTCCTACAATACTGC-TCTAACAAAACAAGGCTGTCTGGAACCCCTGGCAACAGGATTGTT-ACCTTTACACCAAGAAGGTTGGGGAAGCACCTAAATCTGCATGTGGTGTGTGCCCATGCAGACTGTGAGGGA-CTCGTGCCCGGAGACCCAAAGTCCTT
s HiC_scaffold_1 43690793 164 - 233722169 TGCTGTCCTCCAATACAGCCTCTAACAGAAGCAGAGTCTTAGGAGCCCC-AATACCAGAATTGTTTGCCTTTATATCAAAAAGGGCAGGAAAGCACCAAACTCTGTATGTGCTGTGTGCCCAGGCAGCCTGCGAGGTCTCTAGTGCTGCGAGgccacaagttttt

a score=3987
s chr3            41067498 70 + 160039680 TTTATTGTACATGCTTTATTAAAACGGTACTCGTATTTACAGCATC---GCAGGAAGTTTCCCCCAAGGTGCT
s HiC_scaffold_1 166988916 73 - 233722169 TTTATTGTACATGCTTTATTAAAATGGTACCTATATTTATAGTATCTGTGGAAAGAGTCCCTTCCAAGGCACT

a score=3789
s chr3            41214849 508 + 160039680 AGTTCTAGTGTGTGAGAAACAGCCCCAAGCTGCTGTGAGACTGAAGAGATAGGCGATCAGACTCAAAGGCACAGTGAGTGCAATTACTGGGGACTCACTGACAGAAGCATGCATGGAGAACACCGCACCCCACCTACACAATACAGCCACCGCCACTGCCACCACCACCACTGCTGCCATGCTGTGCTACCATTCCAACATGTTACTAAGAAGAGTTCATTGTGAAGCAAAAGCAAGAGTGGCCTAGTCTCCATCAGCAGGAGGGAGTCTGGACAAGGGCAAAAGTCACTTCCCCTGAGCTAAAAGGGATCTATCTGCCTTACCTCAGCTCCTGCTAAGGGTGCCAGGCCTATTTCTTACCATGATGGCTCAGGGGTCTGGTTGTAAAACTCCACACACCACTCTAACAACTGTGT----------------------CCTTTCAAAGAGAGCAGAGTGGTTTCCCTCAGGGATAGTCATGGCCGTTATGACTCAGCATGGAT----GAGTTCAAATGAGGATGAATccagaca
s HiC_scaffold_1 172469314 419 - 233722169 AGTCCTTGTGTGTGAGAACCAGCTACGAGATGCTGGGAGACTAAAGAGGTAGA----CAGATCCA---GGATAATACAGATAATTTATGGGGAACATCTGAGA-AATTGTGTCTTGAG-----------------------------------------------------TGGTGATAGATTCT-------------CATG--ACTTAG----------------GTCAAAG--AGAGTG----AATGTCTATAATC--------------GTTAGGGTAAAAGTGACTTCATCTAAGCCAGAATGTACCTGGCTTCTTT---CAAGCTAATACCACAGACAGAAGGCATATTCCTGGCACTGGCAGCAACAGGGATCAGTTACAAAGCTCCACATACCACCCTAAAGGTTTTGTTTACTTACAGTATGATAGGAAACTATGCAGGGAAATCAGACCAGGGTTACTCAGGAGTAATCAGCGCAGATGCAACTAAACATGGCTCTAAGATGGCAGGTCAAGGTGAATTCCTACA

a score=25714
s chr3            41485725 715 + 160039680 AGCCACAGTCGACCCCACCGTGTTCTCTGACATCACGGCCGATGACGAGCCCTTGAA--GAGTCTCCTTCCAGCTGTTTGCAGACAAAGTTCCAAAGACAGCGGGAAAC-TTTCATGCTCTGAGCACTGGAGAGAAAGGATTTTACTAGAAGGGTTCCTCCTTTCACAGAATTATTCCAGGATTCATGTGCCAGGGTGGTGACTTTACATGCCATAATGGCACTGGCGGCAGATCCATCTATGGAGAGAAATTTGAGGATGAGATCTTCATCCTGAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATACTGGACCAACACAAACGGTTCCCAGTTTTTTATCTGCACTGCCAAGACTAAGTGGCTGGATGGCAAGCATGTGGTGTCTGGGAAGGTGAAAGAAGGCATGAACATTGTGGAAGCCATGGAGTGTTTTGGGTCCAGGAATGGAAAGACCAGCAAG------ACCATTTCCGACTGTGGATAACTCTAAT----TTCTTTTGACTTGCAGGCATTTTACCCATCCAACCATTCCTTCTGTAGCGCAGGAGAGCATCCCTAC--CCCATCTGCTTGAAATACCCTGTAATCTCTGCTCA------AGTTCTTTGGGTTCCATATTTTCCTCATTCCCCTTCAAGTCTAGCTGGATGGCAAAGTTAAGTTTATGATTATGAATAAAAACTAAATAAGAAAAGAAATAACTTTACAGAGTCAAGTACTG
s HiC_scaffold_1 161260818 693 - 233722169 AACTGTGGTCAACTCCAGTGTGTCCT-TGATATCACGCCC-ATGGCAAGCCCTTGGGCTGCATCTCATTTGAGCTATTTTCAGACAAACTTccaaagacaacagaaaacattttttgctgtgaacactggagagaaaacatTAGGTTATAAGTGTTCCTGCTCTCTCAGAATTATTCTGGGATTTATGCTTTAGGGTGGTGACGTCACAGGCCACAGTGCCACTGGTGGCAAGT--GTCTATAG-GAGAAATTCAG---TGAGAAATTCATCCTGAAGCACACGGGTCCTGGCATCTTCTATGTGGCAAGTACTGAACCAAAAATAAAGGGTTTCAGTTTTTCATCTGCATTACCAAAAGCAAGAGGTTGGAAAGCAAGCTCATGTTCTTCAGGAAAGTGAAAGAGGATATGAAC-TCCAGGGTGCTATGAAGCGCTTCGGGTCAGGAAACTGCAGGACCAGGAGAAAGATCAACATCGCCGATCGTGAACAACACACATGTGACTCCTTTATATCACGATCACCAAAACCAT-----------TTCTCTCACTCAGAAGGGCA-CCCTGCGACCCACCTGCTCAAAACACCTCATCATCTCTGCTGAAACTGCAGTGTTCTGGgttccatattttccttttt----------------------gcagAGTTTAACTTATGGTTATGAATAAaacctaaataattaaaaaaaaagacatacgcACTTATGttttg

a score=5735
s chr3           41485934 232 + 160039680 CATAATGGCACTGGCGGCAGATCCATCTATGGAGAGAAATTTGAGGATGAGATCTTCATCCTGAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATACTGGAC-CAACACAAACGGTTCCCAGTTTTTTATCTGCAC-TGCCAAGACTAAGTGGCTGGATGGCAAGCATGTGGTGTCTGGGAAGGTGAAAGAAGGCATGAACATTGTGGAAGCCATGGAGTGTTTTGGGTC
s HiC_scaffold_1 78550365 234 - 233722169 CATGATGGGACAGGAGGAAAGTCCATTTATGAAGATAAATTTCAAGATGAAAACTTTAATGTAAGGCACACTGACCCTGGCTTCTTATCTATGTCCAGTTGAGGATGGGATATGAATAATTCTCAGTTTTTTCATAACACAAAATGAGGCAGAACATTTGGATCTTAAACATGTGGTATTTAGTTTTGTTGAGAATAATACAGATACTATGAAAAAGATTGAATCATTTGGTTC

a score=13266
s chr3           41486011 397 + 160039680 TGGCATCTTGTCCATGGCAAATACTGGACCAA-CACAAACGGTTCCCAGTTTTTTATCTGCACTGCCAAGACTAAGTGGCTGGATGGCAAGCATGTGGTGTCTGGGAAGGTGAAAGAAGGCATGAACATTGTGGAAGCCATGGAGTGTTTTGGGTCCAGGAATGGAAAGACCAGCAAGACCATTTCCGACTGTGGATAACTCTAATTTCTTTTGACTTGCAGGCATTTTACCCATCCAACCATTCCTTCTGTAGCGCAGGAGAGCATC-CCTACCCCATCTGCTTGAAATACCCTGTAATCTCTGCTCAAGTTCTTTGGGTTCCATATTTTCCTCATTCCCCTTCAAGTCTAGCTGGATGGCAAAGTTAAGTTTATGATTATGAATAAAAACTAAATAA
s HiC_scaffold_1 64769825 363 - 233722169 TGACATAGTGTTT-TGGTTCATGCTGAACCAAACACAAatggtttccattttttcatttgcACTACCAAGACTGAGTGGTTGG----CAAGCACGTAATCTTTGGAAAGATGAAAGAGGGTGTGAACACTGCGAAGATCATGGAGCAAGTCAGATCCAGGAACAGAA--------------------GAGTGTGaacaactgtaa--catggtgaattGTGTGCACTGCAACCACCAGATCATTC---CTATAGCTTGGGAGTACACCGTGCACCCTACCTGCTCAAAA-ATCCCACTGTCTC-ACTGCAGTTCTTTGGTTTGCATGTTTTCTTTGCTCCCCTCC----TGAGCAGGATTGCAGTGTTAAATTTATGGCTATGAATTAAAACTAAATAA

a score=3747
s chr3            41735913 125 + 160039680 ATCTAGAAATCC---TAGATTCAGATTACCACAAAAGTCTGCAAT-----CACATCAGCACTCAAGGCTTCAGATTATAGAGTATTTTGGAATTTGGATTTTCAAATTAGGTATGCTCAATCTATATTAGAAA
s HiC_scaffold_1 111943643 129 - 233722169 ACCCATAAATTCACATAAGTTCAG----CTACAGAAATTTCTATTTGTGGCATGTCAGAGCTCAGAGTTTCAGATTTTAGAGCATTTCAGATTTAGAATTTTTGGACTGGGGTTGCTCAATTGTAATTATAAA

a score=13841
s chr3            42585143 545 + 160039680 TCACATTCCTCCCTATTGGCTCTCACAAAATGTGCTCTTTAACGCAAA----ACTGACTGTCCTTTCATTAGGGGCCAGGTATGTTTTTCTTTGGCTCTGTTCTATTTCTAATTATTTTCTTTGATGCCTTTAAGGAAGCTATCTTGGCTCTTTGAGTGTTTACTATACTCAATAAACATATTAATTTT-TTGGCTTGAACTTTCCCCTTAACTTGCTTGAACAGAACAATGCCAG-----TACTGGCACCAGTTTGCAGTTGCTCCAAGCTTT--CATAATAATACTTGTCAGGCTTTCCTTTGTAACCAGATCCCTATTCCCTCCATGTCTACAGTACTACTACATTATTTCTCAGAAATCCACATGCATGTGGCCAAAAGAAGAAATCCATGGTTTTTTGTTTGTTTGTTTGTTTTTAAAGAATATAAGCCAAGTGT----GGTTTCCTTTTCATTTC-----------ATCATTTAGGTGAGTTACTG----------ATTCTGGTTGAAAG-----TTTAACTAGAACCTTTCTAAAA---------AGCATGG------CTCCATCCTTTCT----ACTCCTAGAGGTGATGAAATAGGC
s HiC_scaffold_1 215432042 576 - 233722169 TCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAG-ATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAGAACC--AATCCCTTGATGTCTACGATATCAC--------TCTTTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCA----TTTTTG--------------TCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAAAGGTTGTTTCCTCTTAAACAATACTAAAACCCCACTTTAGCAAGGAGTCCACTCTATCCAGTCTACAAACTTTATTAGTTTATGAATTAGGC

a score=10241
s chr3            42585149 473 + 160039680 TCCTCCCTATTGGCTCTCACAAAATGTGCTCTTTAACGCAAAACTGACTGTCCTTTCATTAGGGGCCAGGTATGTTTTTCTTTGGCTCTGTTCTATTTCTAATTATTTTCTTTGATGCCTTTAAGGAAGCTATCTTGGCTCTTTGAGTGTTTACTATACTCAATAAACATATTAATTTTT-TGGCTTGAACTTTCCCCTTAACTTGCTTGAACAGAACAATGCCAGTA-----CTGGCACCAGTTTGCAGTTGCTCCAAGCTT--TCATAATAATACTTGT--CAGGCTTTCCTTTGTAACCAGATCCCTATTCCCTCCATGTCTACAGTACTACTACATTATTTCTCAGAAATCCACATGCATGTGGCCAAAAGAAGAAATCCATGGTTTTTTGTTTGTTTGTTTGTTTTTAAAGAATATAAGCCAAG------TGTGGTTTCCTTTTCATTTCATCATTTAGGTGAGTTAC----------TGATTCTGGTTGAAAG
s HiC_scaffold_1 172799199 478 - 233722169 TCCTTCCCACTGGGT-TCACAAAGCTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGG-GTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACAC---TACCCATCCCCTTGACATCTACAACATCACC------CTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGG----------CCTAAACAACATACACCAGGgtcccctcctctttccctttgtcTTCATCATTTTGGCAAATTACTGGAAGATGGTGGTTCTGGCCAAAAG

a score=6014
s chr3            44092702 190 + 160039680 AGTAACCTGAGGCAACC---CTGAGGTCACTTGATTTAAACCTTTTTCAGGACTTTCTAAAACTATTATCTTCTTCTCATCCCATTGAAACATTTATTCTGTTTTATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACTAAATTGTTATAATTTCTTCCTTTGACA
s HiC_scaffold_1 112170122 184 - 233722169 AGTAAC-TGAGATGACCAATCTGCTGTttgttcttttcagtttttctctg---ctCATAAAACCAATCTCTTCTGCTCAGTCCATTGGAATACTTACTGTATTTTATGAAATCAAGTGCTACCTGATTCTGAAATTGAAATTAAAGCAAATTAGGATCTT-----TAAATTGTTGTAGCTCTGTCCTTTGACA

a score=4803
s chr3            44092752 141 + 160039680 TTTCTAAAACTA----TTATCTTCTTCTCATCCCA--TTGAAACATTTATTCTGTTTTATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACTAAATTGTTATAATTTCTTCCTTTGACAA
s HiC_scaffold_1 111361290 142 - 233722169 TCTATAAAACCAAATTCTTTTCTCTGCTCAGCCCACTTTGAAACACTACTTCTATTTTATGGAAGGAAGCGTTGCCTGATCCTAGAATTACAAATAATGCCAATTAAGATCTTTAAA-TGTATCGT----AGTTTGTCTTTGGACAA

a score=5445
s chr3            44092781 114 + 160039680 CATTGAAACATTTATTCTGTTTTATAGAGTGAACTATTGCCCAATTATAGATTCTAAAATAAAGCCAATTAAGATCTTTAAACTAAATTGTT---ATAATTTCTTCCTTTGACAACA
s HiC_scaffold_1 127346458 117 - 233722169 CACTGGAACACTTATTGTATTTTATGGTGTGAAGTGTTGCCTGGTTCTGAAATCAAGAACAAATCCAGATAAAATCTTTAAACTAATTTGTTGGGAGTATTTTGTCCTTTGACAATA

a score=5223
s chr3            44718176 102 + 160039680 GGAATCTTCCTGGCTGGGCACATCATCATCCCACCGGTGAGTTCCGCAGCACTGAGGCTGTTTCTTTTGGGGGTGTTCATGACT--AGGAATGTGGCAGCCTCC
s HiC_scaffold_1 108152429 104 - 233722169 GGCACTTACCTGGCCAGGCACATGATCATTCCACAGGTGAGCTCTGCAGCACTGAGGCTGTTCCCATTGGGGGTGCTGAAGAGCAAAGGAAAGAGGGAACATCC

a score=10119
s chr3            44718251 149 + 160039680 TTCATGACTAGGAA---------TGTGGCAGCCTCCAGATCTACATTGTCCATGCCTGTACCAGCCCTGCCCACCACCTGGAGCTTCTCTGCTGCGTTAATGACATCGGCAGTGACCTTAGTAGCTGACTGGACGATAAGGTCTTCACAGTCCTGGAG
s HiC_scaffold_1 108154071 158 - 233722169 TTCATGACCAGGATGCCTCTCCTTGTTGCGGCCTCAAGATCCACGTTATCCACACCTGTGCCAGCCCTGCCCACCACCAGGAGCTTCTCTGCTGCATTGATGACATCAGCGGTGACCTTGGTGGCTGACCGGACAATAAGGCCCTCACAGTCCTAAGG

a score=6573
s chr3            44718401 184 + 160039680 TCTGCTCCTGTTCTCCTTCTCTACCACCTTCATACCTCCATCGTGCAGGATCTTCTGGCATCAGGGCTCAAGG------CTGATGAGTACTTTGCACAGATATGCGAGGGGCATTGCTGGAGCCAGGCCTTAGAATCGGTTGCTCTGGGTGG--------------TTCAGTAAAATGCAGGCAG----GGCTGGCTCCGGTGACAGG
s HiC_scaffold_1 108168231 207 - 233722169 TTTGCTCAGGTTCTGCTTTTCCACCACCTGCAGCCCTCCATCTTGCAGGATCTTTCGACAGCAGGGGTCCAGGCTGTCACTGATGAGCACTTTTCGCAGATTTGTGAAGGCCATCGCTGGATTT-GGACTCCGAGGCTGCCGCTCGCGGTGGACAGAAGCCCTTATACCAAGAAGCTGCAGTTCGCACTGGCTGGCTCGAGTAACTGG

a score=18626
s chr3            44725149 652 + 160039680 TTTCTCTACTATCAAG---TCTAAGTCGG--TCTCCCAAGAAGTCAGAGAAGTCATGGAAAATCTTCGGGGGAAGGAGAGGAGCTGAGCATTGAAACAATGAACAAGAGTCTGGGGAGTCATTTTGAGCA-CATGGAACACTTACCAACTATATGCTACTGATTGGTCCAAACAGAATCTATT-CAGGGGCTATGCATTTGTCACATAGGCCACTATGGAGGAAATTGATGCAGCTGTGAATGCAAGACCATGCAGTGTGGATGGAAGAGTTGTGGAAGCCAAA---AGCTCCATCAAGAGAAGATTCAGAGAGACCAGGTGCCCACTTAACTGTGAAAAAAAGAGATAGATCTTTGCTGGTGGTA--ACAGACAACACTGAGGAATGTCATCTGCAAGG-TGTTTTGA--AGTATTAAAAAAGTTACTGAAATCATGACTGACAGAAACAGTGGAA-----AGGGGTTTTGC-TTTGTCACCTCTGATGACCATAACTCCATGGATAAGACTGT--------TATACCATACTGGGAATGGCCACAACTGTGAAA-GAGGAAAATCTCCCATGGGGGTAAAAGTTTGGCCGTGCTTCCTCCAGCCTAAGAGCTCCAA---------------------------------GTTGTTTTGTTGACAAAAACAATTTTGATTGAAAAGAAAATGTCAGCAATTGTGGTAGCTTCAG
s HiC_scaffold_1 210325298 681 - 233722169 TCTTCCCACTGTCAATGTTTCTAAACCGGGGTCTCTTAAGGAGTCTGAATAGCTGCAGAAGCTCTGCATTGGAGGG-------CTGAGCTTTGACAAAACCAGGAAGAGGCTGAGAAGCCATTCTGAGAAGTGAGGAACACTTGCAGATTGAGTGGCCACGAGAGACCCAAACACAAAGGGCTGCAGGGCCTCCAGGTTTGTAACTTATGCCAGCATGGAGGAGGTAGACACAGCCTTGAAAGCAAGGCTGCACAAAGTGGATGGAACAGTTATGGAA-CTAAAGTGAGCTATCTCAAGAGAAGATTCTCAAAGTCCAGGAGCCCATTTAACTGTGA-----------AGATCTTTGTGGATGGCATTAAAGAAGACACTGAAGAACATCACCTATGAGATTATTTTGAACAGTATGGAGAAAT------------TGACTGACCGAGGCAGTGAAAAGAAGAGGGGCTTTGCTTTTGTAACTTTTGATGACCACGATTGTGTGGATAAGATTGTAATTCAGAAATACCATACTGTGAACAACCACAACTGTGAAGTAAGGAAGCTCTATCAAAGCAGGGTATGGTTA---GTGCTTCATCTGGCCAAAGAGGTCCAAGTGGCTCTGGAAATTTTGGTGGTGGTCATGGAGGTGGTTTTGGTGGCAATGACAGTTTTGGTTGCAGAGGAAACTTAAGTGATCAAGATGATTTTGG

a score=7101
s chr3            44925213 155 + 160039680 TAGCAAGCTGAGGCATTGATAAA---GCAAACAAATT-TGATTCATGTT-TAATGTTTATCACATCATTTAACAAAACCTAAGTCCAGTATTTATTTGATATTGAGCAGTGTGATTTAATTCATACCCATTGAACTACTAAGTATATTCTGATGAATACT
s HiC_scaffold_1 149788932 160 - 233722169 TAGCAAACCAAGGCATTGATGAGAGGGCATGCAAATTGTGCTTCACTTTACAGTGTTTATCAGAGCACTTAATAAAATGTAAGGCTGGTATTTATTTGAAGTTGTACAGTATGACTTAATTCACATCTGTTGgaatagaaaatatattctgtTGAGTATT

a score=61711
s chr3           45109705 3108 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGA--AATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA-----ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAA-AAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgat-----aaaagtcttggaaagatca-----ggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatca-agggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatga-------------ccctaaaaa-----------ttccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactc-aaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattaggg-aaacaacaaccttctcaataatcataaataat-----ataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaactcttctctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtga--cagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgacaaatgggacctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttacta-----tcctaaatcagataggtgactaatatccaatatatatgaagaacataagaagg---tggactccagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaaaattctcacctgaggaatacaaaatagctgagaagcac-ctgataaaatgtccaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagattacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccatttttggtgggattacaagcttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggacatagtaataccggaggatcctgcaatacttctcctgggcatatatccagaagacgt---tccatctggtaataaggacacatgctccactatgttcataacagccctatttatgatagccagaagctggaaagaacccagatgcccctcaacagtggaatggatacagaaaatgtggtacatttacacaatggagtactattcagctattaaaaagaatgaatatatgaaattcct-gccaaatggatggacctggagggcatcatcctgagtggggtaacaaaatca
s HiC_scaffold_1 77690218 2923 - 233722169 aagttatcccatgcatattctCAGGCCATAGTGCAATGCAATtataaatcaatgacaaaagaaatca--gaaacttcataaacaaatggaaattaactTACACCCC-CTGAACAGCAATTgaatcacagataaaattaaagaataatttggATAGTTTCTATGATTAAATGACAATATCATTACAACATACTAGAACTTGTGGCACACGCTGAAAGCAGTTCTACTAGGAAACTTTATAGCAGTGagtacccatatcaggaaaacaaagaaagctcAAGTAAACAACTTAGTGTTGAACCTCAAGCCTCTGGAAAATgaagagcaggtcaagcccaaagtTTGTGCCCAGGAGgagattataaagatcagagcagaaattaattgaATGGAGAGtaagaaaattatacaaagaatcaatgaattgaagagctgatT-TTTGAAAgtctaaataaaaacaacaaactctTAGTCAAtgttat-------caaaaataaaagactcaaatccatgcaattaggaatgaaaagagtaaaatcacagTGAATCCTGCAAAAATCCCGAAGATCACGTGTACTTACTTCAAGAGCTTATATTCTAGTAcgatgaaaaa--tgcaaaaaatggaCTGATTCCTAGATGAAT------TAATGACAttgaatcaag----aagcaaaattCCTAATGCCCCAACATgagtcaataaaattgaatataaaagtaaaaacctactaatgaagaaaagcccaggccctgaagTATGTACTGCTGAATTCT---------------------------------------------------------------------------------------------------------TGATACC-AaaacagagaaggacccaactatgaaagggaactacaggccaatctgtctaatgaatacaaatgcaaaaatcatcaataagatactCGTCAACAGAAtgtagtaaatcatcaagaaggttatacaccaggaccaagtaggatttatcctAGGGat-cagagatggttcaacatatgtaaatcaataaatgtagcacACCACATTAACAAAGCCAAGTATAAAGCC------ATAGTATCCTAAGATGTAGAAAgaacttttgacaaaatccaggaCCAattcatgataaagaaaaaaccctacagaaaataaaattggaataggtcatgtatatctcaatctgatagaactcatctttgacaaac---caaccaacatcataataaatggatgaaaactgaaaacttttactttaaaatcagaaacaagaaaaagatgtTTAATATTACCAttgttattcaatatagttctgggaatGTATGCTAGAGCAGTTAGAC-ACAGAAAAAGATCAGAggcataaaaataggaaag---gaagttcAATTATCAATATATGCAGATGAtgtaatactctacatagaagatttaCTTTACTTCTCATAGAAGATTGCCATActctccaccaaaagatttctagatttaataaacaaattcagtaacataggt-gatacaaaatcaacactcaacaAACCAATAGCCGtactgtacacaaataacaaactcaccaag--agaaatTGGGGAAAACAACATCTTCTACAATAGtctccaaaaatgaaaaataaaatgcctagaaatcaatctaatggAGGAAATTAAAGACCTGTACTTTGAAAACTACAGGTCTCTAATAAAGGGCATTCAAGagtatatcagaaaataaaaagatatcccttgttctctGGTAATAAAAACCAATATAGTTAAAATGGCTATAATTTCATAATT-GTATGCATATCTAATGCAATTTTGATCAAAATTCTAACAATGtgcctcacagatttagaga----------caAA--ATTCGTGTAGaccaagagacctagaatagcaaaggcaattcaggacaacaaaggcaaggcagggaacatcacaatccctgatttaaaATT----------GAAGCTGTGactaaaacagcatggtactggaaaacaaaaccagatttgaggatcaatagaacagattaaaaga-agggaaatatttccagacatacttagccaccttgtctttgataaagatgccaaa----cacattggaagaaagataacctctttaataaatagtgctag-aaaaTTGAATTTCCACAAGTTGGAGATTAAAATTGAATCCCTATCTTTCAaaatgcactaaagtca-----aaatggataaaaa------atattaaaacataaatact-aaaCCCATTG------AAATGTAGAAGAA--TTTAAACTCTAGT----GGAGCAAAATTTTGTGTATGAAACCGTGATCatataggaactatcacaaagaatgaacaatgggaatttcatcttattaaaaagcttttgcacaataaGGGAAaccatgaaaagaataaaaagacaaaccacattgttgaaaaaaatgtttgccagatgttcc----tcagacaaaggattaccaACAAGAgtgtattaaaaaattaaaaaaaaatcagatctcctaaattcaaa-gacccaattcaaaaatgggcatctgaaattaac---acttctcagatgagaaat-ccaaatggcaaataaatatactaaaaaaatgctcaacatcactagtcttttgagagatgcaaattaaaacaacactgacattccacttcactgcagaaaga--------------------------------atgttgacattgcagaggagacaaagaaactcttctccgctattggtgggagtgtagactggtgtaacaactatggaaatcagagtggagattcctcaaaaaactagaagtaCAGGCTCCACTTAACTCAGCTAT-Ttcattcttggtatcttcccaaaagaattaaaactatcagatcacagcaatatatgcacactcgtgtttatagcaacacaa------atagCCAAATCTTGTAaatagcccaaatgtccatcaagtgATGTAGGGATAAAGAAGA---gttttttaaatacaatgaattactactctgccataaagaaggataagcctgagatatttctaggtaaatgtgttcaccttgagaccatactcttgagtgaaataaatcaatca

a score=28190
s chr3           45109705 1506 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAA----GCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGA-------------------------------------------------------------------------------------------------------------------------------------------------AGAAATATAAC--------------------------AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAA---AAACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCC--AAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACT--CTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCT-TATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagac-aaaaaccacatgatcatctccttagatgcg--gaaaaagcattccacaagatccaacacccattaacgat---aaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatgg-------------tgagaagcttga-agcaatcccactaaaatcaggggctagacaaggctgt-ccattctctccatacctattca--acattgtacttgaagtcctagccagagaaattcaacaacaaaaggagat-caagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttca
s HiC_scaffold_1 67243155 1658 - 233722169 AAATAATCTCTTGTATATTATtggataatagaaaaataaaattagaaatcaacagTTA-AGAACTCATAAAAACAATGCTAACAT----ATGGAAATTCAATAACACAGTCTTGAATAATCAATAAGTCACAGATTCAGT---------------------TCCAAGAATCAAAAACATTAGCAACACAAAATACCAAAACCTATGGGACAGGACGAAAGCAGTTATAAGAGAGAAGTTTATAGCTGTAAATGTGCTATTTAGAAAAATAAGGTGATGACA----AATAACCCAATAATGTATCTCAAGatattagaaaaacaagagcCATTCCTACCCAAAAcctgaagaaggaaagaagttatACGTGTCAGAATAGAAATTAAGGTAAttcagaccaaaacaa--------------aaacaaaaaaagagtagtTTCCTTGAAAGTATAAacaatacatataaatatttagccaaacttttcaaaagatagaaagaaaacgTTTATACAAATGCAATTAGAAATCAAAAaggcaccaggcatggtggcacaagcttgcaatctcagcattctggagactgagacaggagcatcacagTAAGTtcgtttgaggccagtctgggatacatagtgagtttaagggcagcctgaactgcataatgaaaccctgtctcagaaatgcaataaataaacaaataagctaGAAATCAAAACTAACACTGCTGAAATCCAGAGGGTTATAAGATTATTCTGAAAACTTACATTTCAATAAATTAGAGAaactagaagaaatggataaattcctaggCACATATGACTCACTGAAAgtggatcaagaagatatgaaaactCTGAACAAACCTATAACAGGCACTGAAATTGAAGCAA----TAATAATTGTACTGACTAAGAAAATCCCAGGACCTGATGCAGTCACTGCTGAATCTTaccagaaatttagagatgaactGATGCCTGTGTTCTTCAGTATCTTCCATAAAATTGAAAGTAAAGAAACTTATCACCAAACTTATTCCTTAAAGTTAGCATTGCCCTGATAACAAATTTGGACAAGGACTcaacacaaaaagaaatgtacaggTCCATTTCCTTaaatgaacatagattc-aaaatCCTCAACATGATCCTTGcacacagaatgaaaaaaatcttttaaaaaatcatataccATGACAAAGTCAGCTTCATTCCAGAGATGCAAAAATGGTTCATCatacaaaaatcaaagaatgaaatacatcatataaacagaaataaggataaaaaatcacataatcatctcaatagatgcatctCAAAAGCCTTTCACAAAATCCAACACCTACTCATGATTTAAAAAGTCAGACAAAAAT-AGGTAGGGAAGGAACTTTCTTTAAACAGATAAAAGCTAT-TAAGTCAAATCCACTGTCAACATCAtgctaaaaggaaaacaaacaaacagaaaactctgagaacattccccctaaaatcagaaacaagacaagaatttATCACTCTCCCTATTCCTGTTTGGTATATAGTACTTGAAATCTTAGCCAGAGTAATCAAGCAAGAGAAAGCAATAAAAGGGattcaaataggaaaggaagaattcaagCTACTTTAATTTGCAAAGCACATAATCCT-TATAGAGAAGACTCAAAAAA---CACCTGAAGATTTTTAGaactaataagcaaattca

a score=49059
s chr3           45109705 2368 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGA----AAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAG---AAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACT------CAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAA------AAGAGCCCAGGACCAGATGGGTTTAGTG-CAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggc-tcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaac----------------agactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaat--tccaactcaag---tcttcaaagaattatgaag---------------------------------agcaat---------------------------------------------ctgca-aatgaatctgga---------------------------------------ataacaaaaaacc----taggatagcaaaaactcttctctaggataaaagaacttctggt---------------ggaatcaccatg--cctgacctaaaactttactacagagcaattatga-taaaaactgaatggtcctagtatagtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatg-tagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaa-tctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgacaaatgggacc
s HiC_scaffold_1 56713768 2445 - 233722169 AGATAATTTCATGcacattatcagatcatagtgccacaAAACTAGAAGTCAggagcaaaagaaaccacagaaactatgcaaacacatggaaa-tgaataATACCCACTTGAATAATCAATGATTCAAG--TAGAAATAAGGAAGAGATTAGACAGTCCCTACAATCAAGCAATAATGTCACTACAACATACCAGAATGTATGAGACACAAGGAAAGCAGTGCTAAGAAGGAAGTTTACTGTGGTGAATTTCCAC--------ACCACAGAGCACTCAAACAGATGACCTAATTATACA-CTcaacattttagaaaaacaagaacaatctaaAGTTATGCaaggaaaat------------tttataaagatcagagcagaaattaaaaaaatcaaaactaagaa---------aaagaatta---aattgaagagttggttctttgaaagaat--aaaaaatagaaaaattattatcCAGGTTtaccaaaataaggaaagaaaagacccaaatccatgcaattagaaagggaaaatgcaaaaatcacaatGGAT-TTGCCCAAATCCAG---ATCATTGGTAACTAATATGagaacttatattctaataaaatgggaa-------atacagaagaaagattcttagatacatacaAAATACCGGAGTTGAACCAAGAGGATATGAAAATCCTGAGTAATCCAGTAAGAGTTGATGAAACTGAAgaagtaa-taataattttaaaaatgatcaactAAGAGCCCAGGTCCCAGTGGATTCACTGCCAAAATTCTATAAcaactttagagaagatctaaggCCAATAGTCCTCaacttctttaatgaaattgaaagagaagcagcacTCCCCAATTAATTCCTGAAAGTAAGCATTGGCCTGATTCCAGAATCAGAAAAAGATCTAACTAAAAAAGGGAACAATAGGCCACTctctctaatgaatatagatTCAAAAGTCAccaataagatactgacaaacagaatgtgtGAAATCAtcaaaa-gatcatacatcatgaccaagtaagattcattccaggaa--------taattcaacatacacaaatc------aataatacaccacataaacagaagcaatggCAAGAATcat---atcatctcaatagacatagaaaaagtGTG--ACAAaacccaacattcattcattataaaaaccctg--aagaccACAAGTACAAAAtgtcttatctcaatctgataaaatccatctatgacaaatcaatagccaacatctac-taaatggagaaaaatggaaatcttctcttctaaaatcaggaacgagATGAGGATGTCTGCTATCACCACTCCTGCTTAAAGTAGTTTtcaaaacactagccagagcaattagaaaagagaaaaaaataaaagaa---atgtggataggaatgaaagaaaaatattactatttGCA-ATGACACGATTct-tacacagaagaccc-----------ccaaatgaTTCCTAGAATGAATTACCAAATTCAGTTGCATAGCAGAATGCAGTCATTGCTCA---AAATCAGTTGTATTCCTGCACATGAGTAATAAACTcaagaaaggaggggaaaaagaagagagaaattagTGGAACAATATGTTTCACAATAgcgtttaaaaaaatgaaatatttaggcattaacctaaccaaggaagtgaaagacctctacaatgaaatttacaaaactctgaaaaagaagatcaaagaggacttcataaaaaggaaagatattccCTTTTTCTGGATAGGGAgaaccagtatagtgaaaatgatcatatttccaaaactgttacacagatttaatgcaatctcaatcaaactCATAGAACTAGAGCAATCTTTAAATTGCTATGGAACCAGTtgtcatggtggtgcacgcccataatcccagcacttgggaggttgaggcaggaggatcaccacaggttcaaggccagctactacacagtgagtctgggccagtctgaactacatagtggagaccctgtctcacacacacaaaaaaaaatccatatagaATCAAAAGAACTCATGAATAGCA-AAATCAATTCATGGCAATAAGGGCAAGACAGGATGCACTGTGATCCAGATTCCAAATTATTCTATCTAGATATAGTGGTTAAAAGCTGTATGCTTTGGGAGCAGGGA-AGACATgaata--aatggaacagaatagaggatgcaaaagcaactccaggaatactcagtcaccttatctttgattatGGGAC-AAATGCTTTTGCTGGAGGAAAGGGagcctcttcaacaaatggtgctgggaaaattggctttccacatgctagaGG---TTGAATCTAT--ACTCATTTCTCTTAAAAATGGGTCagagttctaaat--attaaaaaatttaatattacaGCAGagacacttaatctgctggagtACAAAATAGgagaaattcttgaagacataggtata-ggcaaagactttctgaacagaa---ccctggcacaagaaataatgccaacaatcaacaaatgaaatc

a score=44110
s chr3            45109705 2443 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAA---------AAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATT--TAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCA-AAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCA--CCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAA--GAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACTCAACA-----AAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGG-------------------------------------GTTTAG---------------------------------------------TGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAAC--AAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggataca-aattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaata--atcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaag-atctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagca--atctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgc-----aaatgaatctggaataacaaaaaacctaggatagcaaaaactcttct---ctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatg----------acttgtgctctaagatcgagaattgacaaatggga-cctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataag-acaaaaagactaccaacagattgggaaa
s HiC_scaffold_1 110470300 2415 - 233722169 aatttatcctatgcatattattagattatagtgcaatgaaactagaagttAACGGTAaaggaaaccacagaaattatgcaaa-----------tgtgGATATATAGCAATGTATTCCTGAATAATCAATGAGTTatataagaaatcaaagaagaaactaGATAGTTCTCTAAATTAATAATGtgaat------acaacataccagaatgtATACCATACAATGAAAACAGTTTGAAGAGAGa---ttatagctgtgaatgcccacatcagaaaaatcaAAGCCAGCTAAAGTAATTAATCTAACAGTATACCTCAAGGCa--agaggaagacaagaaaaattcaaatccaaagttaatgtaaagaaggaaattgtcaatatcagaacagaaattaatgatattgagacaaaaa--attat--gaagaatCAATGAAA-TAAGAGCTGATTCTTCAGAA----------------TAAACTCACAGCCAGttttaacaaaag--agaaagaaaagattata-ttGATGCAGTTagtaatgaaaaatgtgaaatcccAACAGACATCACTGAAATCCAGACTATTAGTAa-----tctttgaaaacctctactccaataaattggagaattcgGAAGAAA----CagactcctagatatatatgaattaccaaaactgcaCTAAAGAGATATAAACtccctgaataatccaataacaggcaatgGCATTAAAGCATTAAATAAAGACTACCAACTCAGAAAAGCCCATGAGCCAATGAATAAACTgcttaccagggattgaactcacaaccttgtgcttggcaggcaggtgcttgtgacactgagctaaaccctcagcccctaaACTGCTTAATTCTACAAGTCCTTCCGAGAGGATATACTGCCAATATTCCTCTAATTATTCAATAGAGTTGAAAGAGAAAGAGTAGTTTCAAAGTCATTCCAGGAAGCTAAAATTACCCTTATTCCAAAACCAGCGAATGactctactaaaaaaaaaaaaataatacatcaaTTTCTttcatgaacatagatgtaaaaatcttcaacaagatcCTAACAAACAGACTATAACATATTATCAGAAAAATCATGCAGCAAGACCAAATaagcttcatcccagggatataAGAACaattcaacatatgtaaaataataaatttagtgTACAACATTaagagaagcaaggacaaaaatcatgtgattaTCTGA-TAGACACAGAGAAAGCCTTGAACAAAATCCA--------------------CCCTGAAAAA--CTGGCATAGAAGGACCTCATCTGGATTTGATAAAAGTGATTTA-----------TGGCCAACATCATATCAAATggggaaaagctgaaagcttttactct-aaatcacaaataagacaaagatgttcaaTATTATCACTCCTGTTGAATACAGTACTTGAAACTTTAGCCGGGCA--------TGAGAAAGTAGTAAAAGTGATATGCAATAGTAAAGGAAGAAGtcacattatcattatttgcagataacatgatcctTTATGTAGACGACCCAAAAAAT-------------TCCTAGCACTAGTAAACAAATACAG-GAAGTGgaaggatacaaaataaa--tacacaaaaccaATATGTTCCTGTACAATAGTAATGCACTCACTAAGAAAAACGTtagaaaaacaataccattcacagtaCCATCAAGAACAATCAAACA---CTTAGGAATACCCTAAACAAGAAAGGGGAAGACCTGTACAAGGAAAACTGCAGAATTCT---GAGAAAGATCAAAGATGAAAAtaggaaaatggaacaaaatccC-TGCCCCTGGGTAGGCAGAACCCATATTGTAAAAATGGC-ATATTACCAATACTAACACATACTAATTTAATGCAA--------AAAATACTAATAGGATttctcatagaact----agagaaaaatgccactaaaattcatgcaaaaccaaaacagacctaGGCTAGCAAAAGTAATCCTGGGCAATAATAACAAAACAT---GTGGAATTTCAAT-CCAGATccaaagttatattacaaagctacagtaat-aaaacagtgtggtactggcacaaaaatagatgtgtggatcaaagaaacagaa-agaggatgcagaaacaaccccaggcacattAATTCATCTGACCTGTGGGAA-GCAGACAGAAGTATACAATGGGGAAAAGATAGCCGCTTTA------GGTGTTAGGAGAATCGGCTATACACATGCAGAATATTAAACCTAGACCCTTATCTTTCACCATATACCATgcaca-----aaatggatcaaagatataaatattgaaacataaatatttaatctgctggaagataaagcaagtaaaactcttgaagacataatggTACATAAACACTTTtttgaacagaaccccagtgggCACAAGAAACAGCTGCC-----AACAAGAACAACCTGAAGGGACCCTTATCcaatttaaaagctttt--attgCAGCAAGTAACATCAATAAGAATGAAGCGACAGctcatagaatggaaaa

a score=45082
s chr3           45109705 2020 + 160039680 AAATGGTCCCATGCATCCTATCAGACCA---------CCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAA--------ATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAG----GGCACAGGGACAACATCCT--AATTAACAAAATCAGAAATGAGAAGAA--ATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACT------CAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAAT---AGACACAGTCATTAATAGTTTCCCAGCC-AAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgat-aaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttct--caataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacc-taggatagcaaaaactcttctctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtgacagacaagtaga
s HiC_scaffold_1 97120908 1968 - 233722169 aaattatctcatgcgtATCATCAGACCAAGCATAGTGCAATGAATTggaa---atcaaaagaaatcacatatTTCATAAA-----------CACATG-CAATTCAACAATGACCTCCTGAATAATCATAGGGTCTCaggtgaaatttaagaaaaagttaGACAGTTTTACCA--TTAAGGCCAATG------CAACATACAAGAACTTATGGGGCACAATGAAATCAGTCCTATGAGAGAAATTCATAGCACTGAATACCCAagtcaagaaaacagagcaagctcaaataaacaacttaacgCTAAAACTCAAGTTTccagaaaaggagcaagtcaa---gcccaatgtTTGTACAGTGAAGGAACATTAGAGATATTGAAGCAGAATAATG----CAACAAAG-----ATTAGGAAAACTATATAAAGAATCAGTAGATTGAATAGTTAATActttgacagattaaataaaactgataaactctTAGACAAccttctcaaaaaaacaaaagaggaaaaaaatcctcaaatctatgcaattagtaatgaaaagaatgaaatcacaatACTTTCTGCAGAAATGTAA---GTCAACAATCTCTACTTCAAGAACCTGTgttctaataaga-tagaaaacacaaaagaaatggatagattcctagatacacatgagTTATCacagatgaataaagaagatataaaatttctaaataaaccaatgtcaatcagtgaaattgaagataca---attaaaaacctacaaacagagaaaagcccaggacctagAAGATTCCTTTctgaattctacatgaaatttaaagaatACCTAAATCCGCTACTTTTCAAATTCCTTAATgcaactgaaagggaagcaacgctcccaaattcattcc-tgaaattA-ACCTATTTTGATGCCAGCATCACAGAAGGTTCCAACCAAAA-AGAGAGCTATAGATCAATGT--CTAATGAACCTAGACACAAAAATCC-AAATaatatactggcaaacagaatgcagca----atcAACAAGATTATATATCGTGACCAACTAGGACTCATCCCAAGTATACAGGGCT-GTTCagaatatgcaaatcaataaatataatacattaaattaacagagccaagaacaaaatgTATATGATTATCTCAATGGACGCAGAAGTG----TTGACAAAGTTGAACa-ccgttcatgataaaaaatactatagaaaattggaataaaatctTTATCTCCATC--TGATGAAAGTCACCTATGACACACCATCAACCAACAT---ATTacatggataaaaactgaaaactttcactctaaaatcaggaacaagacaaggatgttcattatcaccactgtta-tcagcatagttctggaaacattagccagagcaattagagaacagaaaaacataaaatgaataatgataataaaaaagaatttaaattatca-tttctgCAGATGATATAGTACTCTAAATAGAAGGCCTCAAAAATTCTGCCAAAGACATTCTAgagttaataatcaaatttaataGCGTAGATGGAcac--agtcaacactcaaaactcaattgC--------------------AACTCACTGATATTGACATTAGGGAAAAAACATCTTTATAATagtattcaaaaaataaataaaatacctaggaatcaatgtaATAAAGTAAGTAAaggatctttacattgaaaac-taaatactctgaaaaaggagattgaaagatatatcagaaaatggaaatatacccCTTGTTATTGTGTAGGAagagccaatatagtgaaaatttccaccttccaaaaattattatacaaatttaatgcaatcctgatgaaaataccaatagcatatcacatagaattagataaaacagttctaaaaatcatttgtaaccagaagagaccttaaaatagcaaaagcaattttgggtTACAAAGGCATGGAAGG-GGCATCATAACtcatgatttgaaattatactacaaaactactatgataaaaat--aacCATCATGGTACCGtcagaaacaagcaaa

a score=8814
s chr3            45109705 326 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAA------GCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAA
s HiC_scaffold_1 127275398 324 - 233722169 aaataatcttCTGCATATTATTAAATcataacagaataaagctaaaaatcaataggaaaataaaccacagaaattaCATGCCAACA----CACGAAGATCAAAGAGTACATTACTATATAATCAAtacatcacagaagaaatcagggaTGAAGTAAAGAAGCTTCTAGAATCAAATGGCAAAGGAAGCACAACATGCCAAAATGTATGGGACACAATGAATGTAACACCAAGAAGGGAGTTTATAGTTGTGAGTATATACAATAAAA----GAAGTGAGCAATCCCAAGTAACTTAATGATGCATTTtaagttcctagaaaaacaagaacaa

a score=8932
s chr3            45109705 464 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTAAGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAA
s HiC_scaffold_1 167010109 441 - 233722169 aaacaatccCCTGCATACTATTAGATCATAAC-----AAAGCTAGAAATCAACATCCTAATAAGCCACAGAAACTACACAAACATAGATAGACTAAATGATATGTTATTGGATAATCAGTggatcagagaagaaataagcTAATAAA----AAAGTTCCTGGAATCAAATGACAATGGAATAACAATACACCCAAGTCTATGAAACACAATGAGAGCAGTTCTAAGAGTGAGGGTATTGACTATACCTGCACACATATAAAGAATAGAATGattccaaataaataacttaGTGATGTACCTCAAGTTCCAAGAAagacaagaacaatccaaatctaaaattaataga----aagaaattataaagatcagagtggaaattaa-----tgagattaggaaaaa-----aaaagaatcaatgaatcccagatttggttctttgaaaggatggGGAAGGGGTATAAA

a score=7685
s chr3           45109705 455 + 160039680 AAATGGTCCCATGCATCCTATCAGACCACCATGGACTA-AGGCTGATCTTCAAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAG--AAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT------TCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAG
s HiC_scaffold_1 29925175 421 - 233722169 AAACAATCCCTTGCATACTATCAG----TTAAGAAGTAGAAAGtagaaatcaacagcagaaaaagcCACAGAAACTATACAAACACCTGGAgattaaatattacattattgaataatcagtggatcatagaagaaattaggaaagtaat-aaaaaattcgTAGAATCAAATGACAGTGGACAGAAAACATACCAAAACTCATGGGACACAATGAAGGCAGTTCTAAGAGAGAAGTTTATAGCTGTAAAAGCATATGTTAAAAAA------AgagtgattctaaataccctaatGATAC-------AGCTCAAGAACAATGAAAAGCTgaaactaacagaaaaaaattaga---------------aagagcagagaaaacatcaatgaaattgagactaaaagtAATATAGATGCTCagtgaatc----------agagttggttctttgaaaggctGGAAAAG

a score=7507
s chr3            45109755 349 + 160039680 AAAAACAACATAAATAATGGAAAGCCAACATTCACGTGGA---------AACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 135153350 327 - 233722169 AGAAACAACA-GAATTATGTAAA---------CACATGGATATAAACATacttgaataa--------tcaatga-------gtcatgggagaaataaaggaagaaagtagATAATTGcattaataaaatgataatgcCATTTCAACATACCAGAGCCTATGGGGCACAATGAAATCAGTCCTAAGAGGGAGATTTATAGCTACAAATGCCTACACCAGAAAAATATGgaaagcccaaataaataacctaatgaaaCATCTaata--tccaacataagaacaagGCAA---ATCCAAAGCTAGTA-CTGGATGGAACTTACAAAGATCAGTGTAGATGTTAataaaattgagattaaaa

a score=8771
s chr3           45109766 387 + 160039680 AAATAATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA------AAAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAAT
s HiC_scaffold_1 24186805 369 - 233722169 AATTGGTAGAAACTC--CATGTATTTGGAGACTAAATAACATGTTATTGAATAATCaataaatcacagaagaaatcagggaagaaataaaaagatttctaGAATCAAATTGCAATGGAAGCACAACATATCAAAGCCTGAGGGACATGATGGAAACATTTCTAAGGGGAAATGTCATAG-ATTAAATGCACACGTAAGAAGA---GAGTAATCTCAAATAAATAACTGAG----------AAAGGTCCTAGAAATAACCTAGAAAGATAAAGAGTAATCCAA----ATCTGAAGGAAGGAATTTacaaagatcagagtggaaagtAATGAAGTTGAGACTAAAAA----ACACAAAGGACCAATGATGCAAAGAGCTGATTACTTGAAAGGAT

a score=17499
s chr3            45109791 1036 + 160039680 TGGAAACTGAATAACACTCTTCTCAATGA----TACCTTGGTCAAGGATGGAATAAAGAAAGAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAGCCACAACATACCCAAAACTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGAAAATTCACCCAAGA---GGAGTAGATGGCAGGA------AATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCA----GAAA-------------TGAGAAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAAT-TTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATAC---CCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAG-----CCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACA---------------------------AAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatc
s HiC_scaffold_1 203899721 1054 - 233722169 TAAAGACTTGATAACATGCAGCTAAATAAGTAATGGCTTGTTAGAGAAATCAAAAAGAATGGAAATG--------CTTAAAATC-AATGAGAGTGGAAACACTGTATACCAAAAGTTATGGGATATAGGAAGAACAGTGCTAAGATAGAAGTTGATAGTAATCAACACCTACATTATAAAAATAGGAATATTTCAAAGAAGCAACCTAATAATGTATTTCAAGGC-CtaggaaaacaagagaaaatgtaaTCCAAAATCTGCAGAAAATAACAGAATAGTAGGATAGCAAAATTCAGAACAGAGataaatgaaatagagactataaaagcaatagaaaagatggatca----aagaactgcttcttttaaaagat--aaaaaattaataaacatttaattatACTAAC--GAAGACA----GAGAAGaaccaaatatataaaattattttgaaaaaaattttattattatgaaaaaattttccaTCAGATACC-ACAAAATATTGAAGATTATTAGAGACTATTGAGAACAAGTACACAG----GAACAATCTAG---AAATGGATAAATGTTTTTAACAATTATAACCTACTGAAATTGTACCACAAAGGCACAGAAGAACCAAAGAGACCAGTAAACAAATAGAAAGATTGAGATTGAGTTACTAATAAGTTTC---ACAAAATAGGAATATCTGGGACTAGTTGGCTTCATGGAtggattttatgaaaattttaaactagAATTAGTATCAACTCTGTG-AAACTATcctaagaaactgaa----agagaactTCTCTAAACTTATTCTATAAAACCACCATttccctgatactaaaaccagacaaggaaacaagaacaacaatatgcagaaaaaatgaaaacaagaaagaaaaatatacaccAATATCTCCAATACATATAGATGCAAAACTTATCAATAAAATACTATCAAAAGGAATCCAGTAGCTTATGAGAAAGATCAATtatcatgaccaaatgggattgaCCCCAGGATTGTGAGAATGGGTCTAT-----GCAAATCAATAATGTACTC----ACATCAACAAACCAAATgacaaaaatt-tataattatc

a score=16898
s chr3           45109887 1101 + 160039680 ACAACATACCCAAAA--CTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCACTGAGTGCCTCCAAAAAGAAACTGGAGAGAGCACACACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAA------AAAGGAAGAAAATTCACCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAA----ACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAA--------TTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGA---TCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAA-TAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGA----TCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttgga-aagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaat
s HiC_scaffold_1 78466890 1082 - 233722169 AcactttacataaaatcccacaGGGCACAATAATA-CAATCCTAAAATGAAAGTTTATAGCCATGATAGCAAAcattaaaagaacagaataattcCAAATGAATA-CCCAATAAAGCATCTCAAGGttctagaaatttttttaaaaagactaaattcA-----AAACTGTAAAAGGAAAACATTA--CAAAACCAGTTCCAAAATtcatgaaattgagactaaagaaa---tacaaaggattaataaattaaataaatgattctttgaaatgataagcaaaattaattaaatgttagccaaacatcaaaaaaaaaaaaagaaaaaaa----aatcaatgcaattaaaaataa-aataggtgaaaTAACAAATC-TGCAGAAATTCAGATAACtataagaaacaattttaaaaactatattcaa--AAATTGGTGTATGTAGGATAAATGGAGAAACATAGACATATTTTGACATATTTGATTTATTGAATCTCAAACAAGAGACTTAAACTCAC----TGAACAGACA---ataatc-aatgaaatagaaagagtGCTAAAAACTGCACCA---AGAAAAGCCTTGGACTTGATGGATTTACTGCATAAATCTACCTGAACTTCAAGTAAGATCTAACACTAATAATCTTCAAG-TCttccataaaattataaaaaaaaggaGCTC-ACAAAACTCATTACTTGAAACTAGCATTAGCATAATACCAAAACCA-AGCAAGAACttttcaacaaaaa-ataaaactgtaggcCCATCTTCTGAGTGAACATAG----AAAACTcctcaaaataa---tagtaaaatgaaaGTAGAAGGTCATTAAAAAAGTCATACTTCATGAGTAAACTAGCTTCAACTCAAGGATGCAAAGACACTTCAACAAATGTAAG-TAATAAACATAGTGCCTTGCATAAACAGAGGGgagaacaaaaaatacatgatcaTCTGAATAAATTCAGACGAA--ATTTAACAGAATCCAAAATTCAATCATGAAAAAAATCCCTAATGAAAATAGATATGGAAAAAACATCTCAAAC--TGATCTAAG-AATTTATGACAAATCCCATCCTCACATCATATTGAATGGGATAAAACTGAAAGCAAT

a score=42322
s chr3           45109983 2586 + 160039680 ACTAGCAGCTTGACAACACATCTAA-----------AAGCTCTAGAAAAAAAGGAAGAAAATTCA--CCCAAGAGGAGTAGATGGCAGGAAATAATCAAACTC-AGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACTAAGAGTTGTTTATTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATGAGAAGAAATATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAAACTCAACAA--AACTGGAAAACCTG------GACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAA---CTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaaca--------------------------------------------------------------------------------------------------------------------atctcaaa---------gacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacg---ataaaagtcttggaaaga-----------------------------------------------------------------tcaggaattc-----------------------------------------------------------------aaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagac-aaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagat----------caagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataac---ttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaa------------------------------------------gtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcc--catgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaactcttctctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaac-cgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactggttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgacaaatgggacctcatgaaact--------------------------tca-------------------------------------------------------------------aagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttactatcctaaatcagatag---------------------gtgactaatatccaatatatatgaagaacataagaaggtggactccagaaaatcaaataaccccattaaaaaatggggc-tcagaactgaacaaaaa--ttctcacctgaggaatacaaaatagctgagaagcacctgataaaatgtccaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagattacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccatttttggtgggattacaagcttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggacatagtaataccggaggatcctgcaatacttctcctgggca
s HiC_scaffold_1  6286823 2843 - 233722169 attaagagccAAATAAATCACCTAATCATGCTCCTCAAGGTCTATAAAACAcgaac---aatccaaatccaaagccagtacaaggaaggaaattataaaattttagagcAGAAATTTATAGAGTGGaggttaaaa-----atacaaacaatcaaTGAAGCAAAGGGATGATTCTTTGAAAGACttaacaaaatagacaaacattTAGCCAGTCTTACCAGA------AAAGAAAAGTtgcaaatcaatgcaattagaaatg---------------------------gaaATCCAGGTTATTAATAACTAC--CTTGAAAAAAATTAGTAATTACTTTGAAAACCTGTGtttcaataaattgga-gaataCATAACCCAATAATAGGCAGTAAAACTGAAGcagtaa-----taataatttaaaaa--------------------------actgtca-------------aCTAAGAAAAGTCCTGGGTCTGGTGGATTTACCGCTGAACTCTACAAGAACTTCAGAGAAGACCTAAGGTCAGTACTTCTTAGGTTTTTTAATGGAACAGAAAGGGAAAGGG-TATATTCAAAAGTCTtttcctggaagctagcattcCCCTgactccaaaaccagacaaggactcAAGTGAAA-aaagaactgcaggccaatctctt------atacagatgcaaaaatcttcaacaagacACTGGccaacagaatgaaacaaatcgtcaaaaagatcatacatcatgatcaagtaggtttcatcccagggatacaagGGGGATTCAACACATTCAAATCAATGAACA-----CATCACATaaacagtggtgcatgcctgaaatcccagtactcagaagactgaggaaggaggattgtcctgatttcaagggcagcctgagctacatagttcaaggccaagctgaactacacaggagaccctgtctcaaaaaacaaatggacaaaaatcacatgatcatttcagttGACTCACACAAAACATTTGACAATAtccaatatccattcatgattataaaaaccccaaagaaaatagatacagaagggggctggggatttagctcagcggcataagcgcctgccttataagcaggcagtcgtgagttcgatccccggtaccgataaaaaggaaaaagacaaaaaaaaaaaaaaaagaagtaaaatagatACAGAAGGATCTTACCGGAATCTGCTAAAAGCCATGTATCACAAACCTACTATCGACATTACATTACATGGGGAAAAGCTGAATGCTTTccatctaaaatcagaaataagacaaaggCTCTCTACTGtcaccattcctgttcaataTGATACTTGaaaaattagccagagcaatcaagcA--AGAAGGACATGTACAGAATAAGAGGAACAtgcacagaaaaggaagaattaaaact--TGTTATTCACAGATTATACGATGCTCTATGTAGATATTTCCAAAAATTCCACTAAGAGGATCCTAAAT----TAAATACTGTATTCAGTAGGATagcaggttacaaaatcaacacaaa-aattcAATAG-GTTCCTGTATGCCAGTCATGAACTCATTGAGAC--ACATTAAGAAAGCAATACGATTagcaatagcatcaagaaaaattaaatacttaggaagcaacctaacaaaggaagtgaaagacctctataacaacaacaacaaaaaaaacaaaaacaaaaacaaaaacaaacaaaaaaaactactgGTTCTGAAAAAGGACACTgaag-agaaatcagaaaatagataTTTCCTCTTCCTGCCAAAG-------AGAACTAGTATAGTCAAAAttaccatacttccaaaactgat-----------attcaatcccaattaaaataccacagc-attcctcacaaaactagagaaaacaatcctaaaattcaaacGGAAgtagaagacacctagaatagcagtAACAGCCTTctgcaataaaagcaaaacagaaaacagcacaaTCCCAGACTTAAAGTTGTATTATGAAGCTCCAGTGA-AAAACCAGCATGGTAtgagcacaaaaacagacatgtgaatCAGCGGAACACAATGGAGggtgcagaaacaaccccaggcgcGTCtggccatctgatctttgacaaaggaccgGAAGCATATCCGGGAGGAGAG----AGCATTTTTAGGAAGTgatgctaggaaaactggctacTCACACGCGGAAGACTGAGTCTAGATCCA----TATCTCTTaccactaaaataaaacaaaaatggatcAGTGACCTAAATGTTAGAACAGGAACACT-AATCTGCTGTAAGATAAATAGAT-AAcatccttgaagacatag--acaaagccaggactttctgaacagaaccccagctAC--ACAAAATAAGGTCAAAAATCAGCAAATGGGAtcctatcaaattaaaaagcttcccattggggatttagctcagtggcataggtgcctgacttggaagcatgaggttgtgatccttgtaccaaaaaataaaaaataaaataagcttctacacagcaaagaaaacagtcAATGGAGTGAAGAGAGAGTCTATAGAATGGAAATAAATGTgtgatagaaagagagagagagagagagagagagagagagagagagagaaa-----gagagagagacagaactcAAAACATTAGACTCACCAAAAT-AAATGACTCCAttaaaaaaatgagcatctgaaatgaagagataccttctcagatgaagaagtagaaatggctaatgaatacatgaaaaaaaatttaacatctcAGACCATTAGAGtaacacaaattaaaacta--ctAAGATTCTATcctgctccagaaagaatggctgtcatcacgaactcaaatagtaacaaatgctggtga---------------------------------------------aaaATTACATAGCCACgatggaaatcattgtggagattcct-aaaaaactaCAACTAGGAATTCTGTTAGGCCTAGCTCTTCCCCTCCTAGGTA

a score=9582
s chr3           45110285 721 + 160039680 ACAAAAAACTCAACA-AAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATAT---------ACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAA-----------------------------CTATTCCACAAAATAGA-----------------AGTAGAAGGAACTCTACTC---AACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCA-GACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacg-gaaattcatcaacataatccattatataaacaatctcaaagacaaaaa--ccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgat------aaaagtcttggaaagatcaggaattcaaggctc-----------atacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggc
s HiC_scaffold_1  6102466 694 - 233722169 ataacaaatttaaaagaaaatggagaactgaaaaggaaagaatatattCCTAGTTACAGATAAACCACCAAAGCTGAgccaagaaaatatgaaaatcttgAATAATCTAATACCAGACAGTAAAATTAAGGAATAAGACAC-----TTAA--------------AAAGAACCCAGGTTACAATGAATTCACTACTGAATCCTACAAAACCTTTAGAGGAGATCTAATATCAATTCTTCTCAAAAGCtaatgaaattcaaattcaaggccagcctgcactacatagtgtaTAACTGTTTCCTACCTCAAAAAAACCAACAGTGCTCCCAAAACCATTCCTGGAAATTAGCGCTACCCTGATTCCAACACCAGAGAA----CAAACAACCAAAGAGAACTACAGGGTCAATCTCATTCATGAGCACACCATCAAAAATCCTC-----------------------------------------------------------Agcaggt---------------caggcatggtggcacacatgtgcaatcc-----cagcactcaagacacAAACAAAACTAAGGACAAAAAAGTCACATGATCGTCCCAATTGATGCAGAAAAACCCTTCGACAAACTCCAATATCCATtcgtgatttaaaaaaaaaact---aaagaaaatatataaaaagatcttatctcaaaaaaatctaaatctgataaaagctatttatgacaaatcaatagccaacaCCATACTTGACGAAAAGAAGCTGACAGTATTCC--TTTAAATCAAGAAC

a score=22580
s chr3            45110291 1005 + 160039680 AACTCAACAAAACTGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAATAGACACAGTCATTAATAGTTTCCCAGCCAAAAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAG---ATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaagacaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagg-gatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccct--------------aaaaat---tccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattag
s HiC_scaffold_1 225982500  979 - 233722169 AATTCCAATAAACTAGAGAATCTAAAAGAAATGGGTAAATTCTTAAAtgcacatgaattaccaaaactgaaccaag-taGATATAAAATCCCAAACCAACCAATAGTAGGCAGTGAAATTAAGGCAGTAATGAAG----TCCtactaagaaaagcccagaaaCTGATAGATTCACCACTGAATTATACTAGTACTTCAGGAAAGAGCTAACACCAGTGCTTCCTAAAGTCTTCGATAAAATAGAAAGGTATGGAACACTGTCAGGTTCATCCCTTGAAGCTGGCATTACTCTTattctaaaaccagaaaaagaaaatgaaagaaagaatgaa-----caagccaatatcattaatatatatagatgcaaaaatattc---aTGATACTTGCAAACAAAATACAAGTAATCACCAAAAGGATCATACATCGTGACAAAGTTACCTTCATTCCAGGGATTCAAGATTGGCTCAATATATGTATA-TCAATAATATAATACACAACATAAGTGAGGT--AAGGATAAAATCGCATA---ATCTCATTAGATGCAGAAata------------atccaacatccattcatgttAAAAAGCCTGATGAAAATAGGTACAGAATA-TCACAC-------TGGTAAAAGTCATTTGTATTAAGCCTATTAtcagtgtcatactaaatggagaaaaa-ttgaaACTTTCATTGCAATATCTGG-----TAAAAGCATGTCCATTATCATGACTCTTGTTCATTATAGTACTCAAAACTTTAAACATAACAGttagacaagagataaaaataaaagtgacatgAATAGGAAAACAAAGGGTCAAACTATtcttatttgcatatgacatgatccTTCACATAAAAGACCCTCTCCCccctaaacaaaaaataaaaacaccaaaagaCTCATAGAGCTAATGAACAAATACAgcaaactgaaaaaatataaaatgaa--caaagaagcCAATAATGATTCTGTACAGTATCAATGAACCAATTGAAAAAGCAGTAAG

a score=62213
s chr3            45110304 2593 + 160039680 TGGAAAACCTGGACAAAAAGGACAAATTTCTAGACAGATACCAGGTACCAAAATTAAATCAGGATCAAATTAACGATCTAAACAGTCCCATATACCCTAAAGAAAT---AGACACAGTCATTAATAGTTTCCCAGCCAA-AAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAatacaattctcgctaaccgaatccaagaacacattaaagcaatcatccattctgaccaagtaggttttattccagggatgcaggggtggtttaatatacggaaattcatcaacataatccattatataaacaatctcaaag-acaaaaaccacatgatcatctccttagatgcggaaaaagcattccacaagatccaacacccattaacgataaaagtcttggaaagatcaggaattcaaggctcatacctaaccatgataaaagcaatctacagcaaactattagccaacatcaaagtaaatggtgagaagcttgaagcaatcccactaaaatcaggggctagacaaggctgtccattctctccatacctattcaacattgtacttgaagtcctagccagagaaattcaacaacaaaaggagatcaagggatacaaattggaaaagatgaagtcaaaataacactttttgcagatgatatgatagtatatataaatgaccctaaaaattccaccagagaactcctaaacctgataaataacttcagtgaagtagctggatataaaattaactcaaacaaatcaattgcctttctctacacaaaaaataaacagactgagaaagaaattagggaaacaacaaccttctcaataatcataaataatataaaatatcttggtgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaattaaagaagatctcagaaaatggaaagatctcccatgctcatggattggcaggatcaacattgt-aaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaagtcttcaaagaattatgaagagcaatctgcaaatgaatctggaataacaaaaaacctaggatagcaaaaactcttctctaggataaaagaacttctggtggaatcaccatgcctgacctaaaactttactacagagcaattatgataaaaactgaatggtcctagtatagtgacagacaagtagaacaatggaatagaattgaagacccagaaatgaacccacacacctatgctcacttgatcttcgacaagggagctaaaaccgtccagtggaagaatgacagcattttcaacaaatggtgttggcacaactgg-ttgttatcatgtagaggaatgcgaatcgatccattcctatctccttgtactaagttcaaatctaattggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgttgaaaagccttgaagatatgggcacaggggaaaaaattcctgaaaagaacagcaatgacttgtgctctaagatcgagaattgacaaatgggacctcatgaaacttcaaagcttctgcaaggcaaaagatactgtcaataagacaaaaagactaccaacagattgggaaaggatctttactatcctaaatcagataggtgactaatatccaatatatatgaaga------acataagaaggtggactccagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaaaattctcacctgaggaatacaaaatagctgagaagcacctgataaaatgtccaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagattacacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcaaggatgtggagaaagaggaacactcctccatttttggtgggattacaagcttgtacaaccactctgaaaatcagtctggtggttcctcagaaaattggacatagtaataccggaggat-cctgcaatacttctcctgggcatatatccagaaga--------cgttccat-ctggtaataaggacacatgctccactatgttcataacagccctatttatgatagccagaagctggaaagaacccagatgcccctcaacagtggaatggatacagaaaatgtggtacatttacacaatggagtactattcagctattaaaaagaatgaatatatgaaattcct-gccaaatggatggacctggagggcatcatcctgagtggggtaacaaaatcacaaaggaacgcacacaatatgtactcactgataagtgcatattatcccaaaatttagat----tacccaagatataagatacaatttg
s HiC_scaffold_1 177567037 2534 - 233722169 tggaaaatgtggaagaaatggaca--------------tatgATTTAAAAAGTTTGAATCAACacaatataaaaatcctaaagaaaacagtatcagtcaataaaattcaagatgca---attaaaaacttatcaacagtTAAAAGCATAGGATCTGAAGAATTCACTGCTGAGTTATCCAAAAAAATTACTGGAGAATTAATACTCCCACTTCTCAAACACTTTAATAAACTTAAAGTGGGGGCAACACTcacaaaatcattcctggaagttTTCATATCCctgatacccaaaccagagaaggacccatcCCAGAAAGAGAAATTCAGGCCAATTTCACCCATGAATACAGATGTAAGAATTCTCAGTGAGACACTTGCAAACATAATGCAATAAATCATTAGgtagattatatatcatgacccaATAGAATTCATCCAAGGGATACAGAAATGCTTCCACATATAAAAATCTATATATGTAAATACCCATATTAATATaaccaaggaaaaaaaaacaaatgatcatgccaatagatgtagaaaaaacatttgatgaagtccaacagcaatgaaaaataaatatcctaCAGAACATTGGAATACAtgacctttatctcaatctgataaaagccatctataacaaaccaacagcaaacatcatgctaaatggactaaagctaaaagctttcactctaaaatcaagtaCAAGACAAGGttatccactgtctccactcttatttatCCTAGtcctggaaacactagccagataaattagacaagagaaataaatgaaaggagtaaagatagaa-----gaagttaaactatcattatttgtagatgacatgatcctctatatATAGTACTCCcaaaatttcatcaaaagacttccagatttaataactaaatttagtTGTATAGCTGGATAAAATGTCAGCACAaa-aaatcaatagtcttcctatacatgaataacaaactcactgagagaaatattaGGGAAACAATAGCCTTCACAAtggcaatcaa-acaatgagatacctagaaatcaatctaataaaggaagtaaaagacctctacactggAAATCTCAGGact-tgaaaaaggagattgaagagggtatcagaaaatggaaaaatattccttcttcttggataggaagaactaaaatagtgaaaaacggccatacttccaaaattg--ctatcgatttaatgcaatctcaatcaagaTCCCAACAgtatatcttacagaatta--gagaaaattttgt-tattcatttggaaccagaagagacctagaatagcaaaggtaattcaaCAGTGGGAAGG-----ccag-ggcatcacaatcctggacttgaAATCATATTAtgaaactactgtgataaaaacagaatgccactgg-ggaaaaaaagacctgaggataaACGgaacaaa----aagatac---aacaacTCCAGACTTACTTAACAaccttatttttgacaatgaTGCCAAACACCTTTACTAGAAGAAagccagtctctttaataaatgttgctggaaaacctggcttgcCAT-ATGTTAAAGATTAAAACTAGGTCCATAGCATTCAttgtacactaaactaaaatcaaaatggatcaa-gatctaaatattaaaacagaaataccaaatctgttgaaagacagaataggtagaacACTTGAAGAAATTGGTGTA-GGCACAGCctctatgaacaaaaccccaattgcataGGTACTATCTCAAGGAATCagcaactaggatctcatctta--taaaagcttttacacagcaagagaagATACCAATggaatgaagagacaactcacacaGTGAGAGAAAAT-TTTGCCATCT---GTTCCACAAAAGGTTACTGTGAAGACTATACAAAGAATACCCACACAAAAAATCaaaccccccaaatttaaa-gttGTGAttcaaaaatgagtatctgaaatgaac--agatacttatCAGATAAAGTAGAAATa-ccaaaaataatatgaaaatatgttcaacatcattggtcactcaatacatgcaaattaaa--aacactgagattctgtctcaccctCAAAGGGattgctattatcaagaaatcaaccaataacaaatgctggcagaggggtgg-gaaaaaggaaatcttctccactgttagtgggatggtagactggtgcaaccacagtggaaatcagtgtggagatttc-----------aaAACACTAAGACTGGAGGTTACATTCAGCtattcttcttggtatcttctcaaaaaaattaaaagcatcctaTCCTAgtaatacatgcata---tccat--tgcttatagcagcacagtttgtaataac--aatcttgaaaacagcccaaacaTCCGCCAGTTGATGATTAGCTAAAGAAGATGTGGattattttttcactgaaatactATT---CTATCATAAAGGACAACT-TgggacatttctagctaaatggctGCACCTTGAGGACATACTCTTaagggaaataaaccagacacacatgtataagtaccgcattgtttctctgatgtg-----ataaatcaaaagtgtaaataaggaacaaaatgtataatagatattttg

a score=5414
s chr3           45110440 214 + 160039680 AAGAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATAGAAGTAGAAGGAACTCTACTCAACTCATTCTATGAAGCCACAGTCACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATAGATG
s HiC_scaffold_1  1869319 203 - 233722169 AACACCACAGACTCAGACAGTTTTATAGACAACTTTTATGAAGGTTTCAAGGAACACAAAAGCCCTGTCTTACACAAACTGTTCCAAAGAATAGTAACAGAAGGAATTCTCCCAACCTCGTTTTATGAGGCTAGGATGACCTCGATTCC-----------AGTACGCCACCACCATGGAAAACCATAGACAGATTTCACTCGTTAGCACAGACG

a score=20158
s chr3            45163774 1562 + 160039680 AACAGTCAAAGAAAATACAA--AATGCAAAAGGATCCTAACTCAAAACATCCA---GGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAAGATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACT-----------------GGAGCAGAAAAGAAATT-------------CCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATA---TTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAA-ACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCA--AAGGATAATAACAGAAAA------GAAGCAATACAAGGACGGAAATCACGCCCTAGAACA-----AACAAGAAAAT---------AATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAAC-TCTAACAACAAAAATAAAAGGAAG-------CAACAATTA---CTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCG--TGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAA--ATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCA
s HiC_scaffold_1 150311135 1533 - 233722169 AATACTCAAAGAAACTCCAAGGAAtataagagaatgagagac--aattATCCAACAGGTA--CTATGTGACAATAAGAAGGCCAGTCTAAGGCAAAATggattaagagaaaaattaaaatat--aac---acaGATTTACCAATATGGTTTAAGAAATCatagaagaaaaatttccaaatataagAAAGGAGTT--TAAAAAACATTATTGATGCTTACAGTACAGCAAACAAACCtaacaacacaacaacaaaaaacaaagaagaagctTACCAAAGTACATCCTTACTAAATTATGAGatgtccagaaaaaaaaatg---------acaatagaaTTCTTttacaaaca--aaagaagaaa----acatcacaCATAAAGGTAAACCAGTTAGAGTCACAGCCTACCTCCTAACATAAACTGTAAAGGCCAGAAGAGATTGTAGTGAAATACCTCACATCTTGAAAGCAAATAATTTTCTAGCAA-----------------AagttgtccttcaaaatagatggagaaataaagtttCTCCATGGAAAAACATCAACTCAAAGGATAT------ATGAATGTTAGCCATCACTAAAAATCATTTAAGAATATTCTccacagaaataacaaaactga---ctCAGCTAAAAACACAGAGGACATGAAAATTCCAAGTAAGATCAATGAATAAAGAGCAACAAAAaatgtcaggaaaagaaaa-gcaaacattcaCCAGCAGATAAAGAAGGCAGTTATATTCAAGAATCAACACATCTCAGTAGTATCTTTTAATATTAACAGCCTCAATTCTCCAATTAGAAGACAAAGATTGAGAGAATGGATTGACAAACAAAACCCAACTGTC------------AAAACTCATCTAATctaaaaagatattcacagacaaaaaattaaagggtagaaaacaacatttcatgcaCTAGGACCCCCAACACAAGCATGGGTAGTATTTCTAATACCAGA-GATGCTAAATTCAAACTAAAACTGattagaagacagaaagaaaagaactacTAACTAGTCAAGTGAACAatccaagaaaaagagataacattaataaaaatatatgcaccaattcTTGGAGCACCTATGggcataaaacaaaaactgctgaaGTTAAAAGATCAAGTAAACACTAATACAATCATAGAGAT---TTTTAACACCCCACTT--TTccagagacagatcaactagaaaaataa---aaaaaaaaattcag---agctaAACAACACTCTTAAACAAAGAGACTTAGTGCATATATACAGAGTATTGTATCCT-CTGCAACAGAGCATACATTTTCTTCAATAGTTCATGTTACTTTTTCTAAAACAGAACATGTACTAGTCCACAAAGCTTgtgtaagaaaatacaaaagaattaaaattacccAAAGCAT--------------GTGCAATGAAAATAGAAGTCAAAGACAAGAGAATGTTTGTGAAAAGCAAAA--TCTCCTGGAAAAT---TAACAGCCT--------ATCCCtaaataaacacagaagaaaccaAAGAAATTGACAAATTTCTGGAAGTTATTGGTTGCGACTGTACAACTTATTGAAATTATTGCAATACTATAAAAACA

a score=26837
s chr3           45163811 1871 + 160039680 ACTCAAAACATCCAGGTAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGGAATTGATGAGAATGAA------GATTTTCAACTTAAAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGA----GATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAG-----AACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAA---------AACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAG------CAATACAAGGACGGAAAT-----CACGCCCTAGAACAA-ACAAGAAAATAATCATTCAACAAACCAA-----------AAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAA--GGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGA-AACT-AACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAA---AGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATG--GAAAGCCAACATTCCCATG---GAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA---CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC-------CCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAA---------TCCTAATTAACAAAATCAGAAAT----GAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAA
s HiC_scaffold_1 18451818 1845 - 233722169 ATTCAAAAGCTCCA------CAATGAtacaa--agaaaatcaataaaaca-atgaTAAGTGCTAATGAAAAAGCATTAGTTAACacttgacataaa-----aataactatttgcAG--AATTAATTGCAAGAACATTCCCAAGTTTAGCAACAGAATCTGATATCCAG----ATAAGTGGGGCATATAGAAATTCAAATAG-CAATAACctaaataaa-----tctatacctagcCATATAATAAACCATAGactagaaattcagcacataaa--cagaatatcaaaagctgttagagaaaaag------taaaagatctattaaaaCAT-TTAGAATTGCAGCA-ACTTCTCAATAGAAAGCCTCAAGTTAAGAAaagattggagtgaagtattccaagacttaaaagaaaacaacttccaacccagattg--atgaccttcaaaattc-------------actgaaaaataagatacttccataaccaAGTACCGCTGAAGAAATCCATG--------TTTAACTAATCCAATTAAACCAAGgttagaaagagtactgaaagatattctagacagagacgAAAGTGACTGCAATTCCCTgaacaacaagagaaagaaaccatcaggcaAGGAAAGCGATTAAACAAGAGGAAATATCAGTAAACAAACAATagcaa----aataacaagaaaaagataagacaatatatataatttatagtcaT------ATACAAATGGCCTcagttcatcaatcaaaagaaactgaTTGGCAAAATGGgtaaagaaacaagatccaacaatatactgtagTCAAGAAACAAAtctaactgaaaaaaagaaattctgagg-aaaggaaaagtatttaaaacaattttccatgcaacaggaaaccagaaaaaagcaggaataggtattctgtttgcagacgatttgaaaatcaatccaaaaatgatcaaaagagatttttaaaagttccataTATACTAATTAGGGG-AAAATTCAACatgaagagatagcaatcatctatatatatgtatcaaatatgGGTGTATCCAACTATAGAAGACAAATATTAAttaacataaaaaatcaaatatgtaataacacaattgtagcaagagaccttaataccccattgtca-caaag---agatcaactagacaaaaa---aacaaagaaataaagagaactgAATTGAATCTATTGA-CAAATGGACAtactagatgtttacag-----tgtttcAACAAACAAATTCAGAATACACCTCATTCTTGGTGCAT-ATGGGACATT-TCTAACATAAACCATATACAAGCccatataata--tttacataacttcaaaagaatttaaattatcccatcCACATTATCCAACCAttgtgcactgaaattggaaattaatgacaaaaaagaaagtgctaaaattacacatacacatacatgtaaataaataacatgctcttgaacaatcaatggttcacaaatgcaattaa-aaagaaattaaacaatatctaaactCAAACAAAAATGCAGCCACAATTTACCATAACCTGTGGAACACAATGGAAGCAGTCTTAAGCAGGAAATAtacagcagtgaattctcacattaggaaaatgtAATGAGCACCAATAAATAAC--AATGTTTCACTTCAAGGTTCTAGAAAATAAAGAG--CAATCGACATCATAGG-TTATacga-aggaaaaaattaaaaagctcagagcagaaattaatgcaattgagtctaagaaaacaatac-gagaactaatgaatcaaagagttgatgcTTTGGAAGAATAAACAACATTGATAAGCTAGCCAACCTtaacaaga------aaagagaacaaagaaagaaactgggacttcctgaaaaagcaa---agaaatatgggaagatgaagaaacaacaaaaagttcccagg---tcccaa

a score=80472
s chr3            45163846 4386 + 160039680 [encoded data, 4957 characters]
s HiC_scaffold_1 119948197 4734 - 233722169 [encoded data, 4957 characters]

a score=17948
s chr3            45163861 950 + 160039680 GATAATAG--GAATTGATGAGAATGAAGATTTTCAACTTAAAGGG----CCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAG----ATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTT-----CACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTC-----AATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGCAATACAAGGAC--GGAAATCACGC---CCTAGAACAAACAAGAAAAT-----AATCATTCAACAAACC-----AAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAG--CAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACT-----GGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAA--ATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAAT
s HiC_scaffold_1 125873502 936 - 233722169 GATAATAACAGAATTatagaaaaggagga----aaatttaaaagaaatttcaaaagatgTGTTCACTGAAATTATAGTATAAAACattccaaatataggaaaagaattcAATATCCAAG----TATAGAAGATCTGTAGAACCCAAAATAGCCACGACCAGAAAAGGAGCTCTCCATGACACAT---cttaatcaaaattccagat--agtcaacaaaaagagaatactaaaagccattagagaaaaacAGCAAGTAATCTACAAAGGCTATCTCATCAGAATAATGGTGAATTTCTAAGAACAGCAGAAAGATTAAAGGACAGGAGAGCTTGTTGTGAAgtttt-caaaccctaaaagaaaacaactatcaGCCTAAGCTTTCATTTCTTGAAAATCACACTTCAAAATTAATACAGAAGGAATGAAT------TTCCATGATGAAGAAAACCTAAAGAAATCCATGGCCACTAAACCAGCATTGCAAAAAATACTTAAGGGAATT---CCAGACAGAGACAAGGAGGTCACAAGCATCAAAAGTCAAAAGGAAAGTTTACAAATAATTGAGAAAgtagtttaaaaaggaaaaca--taaaggaaTA-------AACACTGGAAAATGATACAATGGCAAATTCAATAAACATCTCACAGTGAGAACTCTCAATGTCAGTGGCCTTAACTCTCCAATTAAAAGGCACAAACTGGCAGATTAAATAGGGCAGAAAAATGAGACCA-----TATATTGCCTAAATGAAACACACCTCATCCAAAGAGAAATATATACACTGAAAGTGAAAGAATGGGAAATGATTCTCAATTTAACCAGAGACCAAAGAAAGA----GGAGTAGCTATCTTATTTTCAGACACAACAGACTGCAAG--CAAAATTATCAGAAGAAACAGAGATGACCACTACATAATGATAAAGGGaacaataat---------------aattacaaatatctatgcaccaaat

a score=15962
s chr3            45163899 932 + 160039680 AAGGGCCAGCTAATATCTTCAACAAAATAATAGAAGAAAACTTCCCAAACATAAAAAAA------GAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAACAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGA-AGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCC-ACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAACAGAAAAGAAGC-------AATACAAGGACGGAAATCA----CGCCCTAGAACAAACAAGAAAATAATCATTCAACAAACCAAAAAG-----AAGACAGCCACAAGAACAGAATGCCAACTCTAACA-ACAAAAATAA--AAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAG-GGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGG-----ACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT
s HiC_scaffold_1 185222022 934 - 233722169 AGGGATTCACTAACATCCTTttagaaatcatgaaagaaaatttcccaataacaagaaaacaatttaaagtacAAATAAGCATT------GCTCCTAGAACACCAAACAATTACGATGGGAAAAGAAACTCA--CCAACACACATTCTTATTAAGTACCAGATATCCa----gcaaaaacacaattttaaaagcagtcagaaGGCAGTGGGAA--AAGATCTCAAGTCTAGGTAAATCAG-------ctacacttctcaacacaaacactgaAAGTCAGAAAagcttggagggaagtatttcaagtcctaagaACAactaactttcaacccagattaattTACCTAGC-AAATATTCCTTCAacatagatggagaaat-aaagtatttctatGTGAAAGACCAACTCAGAAAATATATGAGTGCTAAGCCAGCTcc----agaaaaattactttaaaatattcttgacAGATACAGTAAATCAAATCAGATGCAGCTGAAAACAGA-GGGAAACTGGTGAGGCAATAAACTAAACAGCAACAAAAGGAactgggaaaataaaaagcacataCCAGGAGACGAAGACGGCGACGGTAGTAAATGACACATCTCAGTAATAGCTC--AGTGTTAATGTCCTCGACTCGCTAATTAAAAGATATAGACTGACACACTGACTCAAAAAACAGAATCCAATAATCTGTTCCACTCAAGAAA-TCATCTAATCCAAAAAAGACATTCTTAGACTAAaagttaaagaatggaaaacaacattttatGAATCAGGACCCCTTAAATAAGCAGAGGTATTAATTCCAGTATCAAACATGGAAAACTTCAAATTAAAAttgattagaaatgaaaaagaaggtgtcTCCACTACATACTAGCAAAAGGAACAACCCAACAAGAAGAGAGACTACAGataaacatatatgtaccaaGTACTGGGGCACCTATCTTCAT

a score=60988
s chr3           45163913 4045 + 160039680 [encoded data, 4526 characters]
s HiC_scaffold_1 34546242 4301 - 233722169 [encoded data, 4526 characters]

a score=61685
s chr3            45163922 2836 + 160039680 AAAATAATAGAAGAAAACTTCCCAAACATAAAAAAAGAGATGCCCATGATCATACAAGAAGCCTACAGAACTCCAAATAGACTGGAGCAGAAAAGAAATTCCTCCCGACATGGACACATAATCAGAA--CAACAAATGCACTAAATAAAGATAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGAAGGCCTATCAGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGAT----AATAACA----GAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAA----ATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCC---TCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGT-GGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAA--AGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTT-------CAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCT--TGACAACACATCTAAAAGCCCT---AGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA-CTAAAGGGCACAGGGACAAAATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAAC-CTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaa-gacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagtttt---ggaaagatcagg-------------------aatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaa
s HiC_scaffold_1 201749348 2657 - 233722169 AAAGTCAAGggaaaaaacttcccaagcagagaaagagaatttgacatacagataagtgaggtatatggAACTCCAATTAGCTATGATCC--AAATAAATCTATCCCAAGTCATATA-GTAATTAGGATTCCATAAATTCAACaca---atacagaatattaaaagatacaagagaaaagaaacaaatcacatatatatgaaagcccatcagaattacagcaaacttcctaacacaaacccttaagtcaaggagagtttggaatgaagtattacaatcccaaaaagaaaacaaccttcaacccagactgatgtacctgaa-aaactatctttcataaTTGATGTagaaaaaagatactttcattacaaagaacatctgaagaaatccCTGAACACCAAACCAGTACTCCAAAATGTTccaaagaacattctagaaagaggtaA--CAAAGACT---ATAACTCCATGAATCC--CAACAGGATGAATCTACATGGCAACAAAAGTAATTAAAGAAGGggaacaaa----------caacaggaaaataacatgacaaggatgagtcagtacatatcagttataaccatcaatataaatggtgtcaattcaccaatcaaaaga--------aacagaatggattaagaaataagGTCTAACTagatgctgcatacaagaaatacatttaattcaaaaagaaattcatagacggAAAATCAAAGAGTGAAAAACAATAGTCCAAGTGatggaaacccagaaaaaagcaggggta----ttTTATGGGCAGACAAAGTCAATTTCAAACCAAGAAGTATCAACAGAGACATAGAAGGTTACTTCATACTTGTTAAGGGAGCAATCCCAATCCAAAAAGAGATAACAagcataaatatgtatgtaccaaATATCAGcacacacagttatataaaacaaatattaatgcacatgaaaaatcaagtaagcactaATGTAATTGTGATGGGGGGACCTCAACACACT----------------------CAGAAATAG--ACtagccaa------------------aaaaatca------aaaacgaaatatcagaaa-------------------taaatcaaatcagaatacacgttcttctcagctgcacatgggatgttctacAAAATAGATCACACACTAGctcacaaaacatgcttaagtaaatatgaAGTAatggaaattatcccatgcatactatcag---accatagcacaa---TGATTATAGGAAcacaatggcaaaagaaaccacaaaaacttcgtaaatacatggaaa-taaataACCCTCCTGTTAACAA---ATTGGCCACAGATGAAACTGAACATCAAGtcaaacaatatctacaattaaatgagaatgccaatacaacatacaaGAATTTAAGGGACACCATGAAAGCAGTCACATGAGGGATATTTATAG----AGGTGTC---------------AAGAC-TCCCATATCAGAAACTGCTAAGGTTGAACCTCCAGCTTCTGccagaagaagagcaagtcaagt---ccaaagctggtatgagggaagaaattataaagagca-----gaaattaatgcagtcaAGACTAAGAAACTAATGCAAAGAATAAATGAACCAAAGAGTTGattgtttgaaaaattaaataaacttgacaaacccttagtcaaccttatcaaaaaagtaaaaaaaaaaaaacctcaaatctATGCAGTTAGGAATGGCatgggtgaaatcacaacagatcctgcagaagttcaacagatcatcaatatctactttgaaactctgtattcttataaaatggaaaacacaggaaaaaatggacagattcctagattcatatgaattaccaaatctgtatcaag---aag------atataaataa-cccaaatcagtcaatgaaattgaagacataattaaaaa-----ctaCCAAGAAAAGCCCTGGACCTCACACATTCACAGCTTAATTCTCTAAGAAATTTGAC-ACTATCTAATGCCAATAC--CTTTaactctttaaagaaaacaaaaggaaagcaatgtttccaaattcattcctcgAAGCAAGTATTACACTGAaatcaaaaccagagaatgatCTGACTAAAAAAAAGAGCTACAAGTCAATTCCCCTAATGAGTGTAGACAGAAAAATTCTCAGAAAGTTAcagacaaacagaatgtag------------------------------caagtAAGATTCACCCCAGGggtgcaaggatggttcaacatatgcaaatcaataaatgtaatccaccatatcaatagaggcaaaggacaaaaaccacatgatcatctcgaTAGATCCAGAAAAAGCGTTTGACAAATTCCAACACCCACTCCTGATAAAAATCCTTCAGGAATAATTGGATACAATAGAACCCAACTgcaatagatgatctttatctcaatctgataaaagc-----------caccaaTAGCCAACATCCTACTAActgcacaaaaactgaaagctttcactctaaaataaa-----aaacaaggatgtccactgtctccactcttattcagttTAGATCTgtaaactttagccagagcaataagacaagagaaaaaaat-aacatgaaaaagattgGAA---GTGAAGTTAAATTA------TTTGCAGgtaacatgatattctacataaaagaccaCAAAAACTTCACCAGAagtcttctagatttaataaccaaattcagcaggaTAATTGGACAcaa------------------aatagcattcctatatacaaatagcaaactgaacgagagagaaattagggaa-----acctttcataatagtatcaaaaaaaaaaaaa

a score=68602
s chr3            45163923 4250 + 160039680 [encoded data, 4481 characters]
s HiC_scaffold_1 184145309 4081 - 233722169 [encoded data, 4481 characters]

a score=70566
s chr3            45164066 4206 + 160039680 [encoded data, 4573 characters]
s HiC_scaffold_1 109580880 4303 - 233722169 [encoded data, 4573 characters]

a score=20940
s chr3            45164129 1449 + 160039680 AGAATTACATCAGACTTTTCACCAGAGGCTATGAAAGCCAGAAGAGCCTGGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCACGACAAAAACAAATTCACAAAATATCTTTCCACGAATCCAGCCCTTCAAAGGAT-----AATAACAGAAAAGAAGCAATACAAGGACGGAAATCACGCCCTAGAACAAACAAGAAAATAATCATTCAA---------CAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATT----ACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAA-ACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACA----GACACTACCTCAGAGTGAAAAGCTGG--AAAACAATTTTCCAAGCA-AATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGG-------ATAAAATCGACTTCCAACCCAAAGTT-ATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCAC-CTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACT-GACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGA
s HiC_scaffold_1 152825069 1375 - 233722169 AGGATTACAGcagatttttcaataaaaattttgtaGCCCAAGAAAAAGTGAA-----GTGTTTtaattcctaaaagaaaacagcttccaatccagactaatatatcctgcaaaactatc---tttagttgatggaaaaataaggacATTCAAGGACAAAGAACAGCTTAAGAGATACATGAACACCAAAACAGCActcaaaaaaattcatgaatatcCTACACAGAgata-acaaagacaaaaatct-------gaacata-atgaatacaaacaaTCAAAGTGAGTAGTAAATCAAAAAGGGGA---------AAACAGAG----GagtcaacaaaagaaaataaaaggcaacTGTAAGTCAAAACTATCCAGTAACAACTCTCAATATAAATGGCTTCAACTCCCCAACTGAAAAACACAGAGTAGCAGACTGGATCAAAAGTACAAAATTCAA--GTCTGCTAACT-TAAGAgactcatctaatccaaaaagaaattggtagactgaaaaaaaatcaaaggatgggaaaaaaaATACTCTGTGCATCAAGATCCTCAAAAGCAAGCAAGGACAACAATTTTATtctaaggaaatttaaaaaaaaaactttcaagttaaaactgatcagaagaggtaaaGAAGATCACTAAAGATTACTTAAGAGAATAATTCAATAGGAAGAAgtaacaattgtaaatatttatACACCAAATATAGGTGCACTAACCTT-ATACAACAAACTGCACTGAA-CACATAAGATCCAACAAATACCAATATAATCATAGTAGATGATTTCAATAC-CAACTTTCACTAATAAAC------------TAAACATTTAACAAAGAAAT--CAGAGCTGAAccacacctctgaacaaatgaatttaaacagGTATC-ACAAAGCA----TCCACACtataacagaatacacatttttttcaacaTCACAcaaaacattctctaaaatagaccacatactagctgaTAAACcctgcttaaataaatgcaaaagatgcAAAATCATCCCACATAC------------------------ACAAATtccaaaaggaaacacaaa-aattTTCAACCAGC-------TGGACACTAAATAACTCAATTTTGAATACTCAATGGGTCATGG------------AAGAAATTAAACCACTgcaaaaatcaaatgataacgCCAGCACAAAATACCAAAGCTTATGTGACA-----AAAGCAATGCTAAGACAGAATTTTACTGCCACAAATGCTTGCATTGGAAAAACAGAGTAAGCTCAAATGACCTACTGG----TGCCCCTGAAGCTACTACAACTACAGAAACAGTCCAGACCCAAACCAAGTACAAGGAAGAAATTCATAAAGATCAGGGGAAAAATTAACAACATTGAGACTACAAAA--TAACACAAGAATCAATGTATCAAAGaactatttctttgaaagaataaagtagGCAAA

a score=54827
s chr3            45164412 2595 + 160039680 AAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACA--GGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAG--TGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCAT----TAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGA-----------ACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAA-AACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTC-ACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAA-CACTCTT-----CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGA--AGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAG-TCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCT--AATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTA----CCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctctt-atgaatatcgatgcaaaaaccctcaataaaattctcgctaac-------caaatccaagaacacattaaa----gcaatca--tccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgat----aaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttca-actattggaacgagcaatttgcaaatttgtctggaata
s HiC_scaffold_1 154830298 2418 - 233722169 aaaaaagccA---ACAGAGAAAGAATGC----------------AATGACAGGAATGAATCAGTACCTTTCAGGAGTAACTCTCACTGTAAATGACCTAAACTCTCCAATTAGA-GACACAGATTGG-AGAATGGAT---CAAACAATGAACCAAATGGTCTACTGTATTCAAGATcctcatctaatccaaaaggaaacacatagacTAAAAAAATTGAAGGATAAGAAACAATATTACATGAACCAGCCCCCCAAAATCAAGCAGTAGtagaagttttattttcaaagaaaataaattttaagctaAAACTAattagaaaaggcaaagaaagtcactacttATTAGTTAAAGGAACAATTTCACAGTAATAaataacaattattaatataCATGCACTGAATATTGGGGCAcctaacttcataaaacaaatactccTAGATATAGACCATCAAATAAATACCA----ATATAATCATAGTAGGTAACATCAAGACTCCACTTTCACAGAtacacagatcaactagacaaaacatTAACAAAGG------------AATATCAGTTCTGAATCACACCTTCGACAAATGGA--TGTAAGATGTTTACAGTGTGTGTCACTCTAGTAAaaacagaatatgcattcttctcagtagcacatggaaccttctccaaaatagaccatct--TTAGTCTACAAAACCTGCTTAAATAAATACCAAAGAATCAAAATCACATCATATATAACATCAGATCATAGCACATTGAAACTGGATATCCATTGCAAGAAGAACTACGGAAATTTTACAAACACTTGGACGTTAAAAAAACACTCTTGAGCTCTCAGTG-------GGCCACAAaaggtatcaaaaaagaaag-aaacaatgagtAGACTCAAATGATAGTGTCAAAACAACATACCAGAACCAATGGGCCACAGTGAGAACAGTACTAAGAGGGACATTTCTAGATGTGAATGCTCACActaaaaaaacagagagagagatcaaataaataacctactgATGCACTGTAAGTAACTAGAAGAACAAGATCAGTTCAATCACTGCTTAAGA-------ACAGGAAATTCATAAAATCAGAGCCAAAAAtaatgtaattgaaactaaaagaga-ataaaaagaatcaatgagttgaagagctggttctttgaaaaa------aaatgagacaaaccCTTAGGCAAACTTaacaaaagaaagagggaaaagaaccatatcaatgcaattagaaatgaaaacat-gaaattaCAACAGATACTATGGAAAG-CCGAAGATCATTAGTAACCACTATGAAAAATTGTAGACCAATAGATtggaaaatcttgaagaaatggatggatgcttagattcatatgaattactaaaactAAACCAAGGAAACATAAAACTTCTGAACAATCCAATATTAAGCAAAGACATTGAGGCAGTAATAAAGAGATCTACCAACTAAGAA-------------------TTGAATTGAAAGGC--------------AAGAATATCTCCAATCTCATTT---------------------ATGGAAGCCAGTATTATTCTAATTCCAAAACCCA---GATAAAGACATAATTAC----AAAACTAAACTAC------ACTAAACTAAATAAAAGAACTAGTAGTCAATCTTTGTTAATGAACATGGACACataaatcctcaaaaagatactgGCTAACAATGgaacaaataataaaacagactatacatcatgatcaagtacaTCATGCCCAAGTAGGTTTAATCCTAgggatgcaaggatagttcaacatagaCAAATCAACAActgtaatacaccacataaagAGAAGCAAGGACAAGAACTACATGATCTTATCAGTAGATgaggaaaaagcttttgacaaaattcaaca-tcatttgtgatttaaaaaaactctgaagaaaatagatacagAAGAACCTaaactcaatctgataaaagccatttatgacaagccaacagctaatctcatattaaatggggaaaagctAAAATCA-------------CAAAGA----ACCAAGATATTCACTTTCACCATTCTTACTCAACATAGTAC-------ATTAGCGAGAACAAAAAGGcaacagaaagatagaaaaaggatacatataggaaaggaagaagtaaatttATTA---TTTGCA-ATAACATAATCTTACACATAGAAAAAcccaaaa-atccaccaaaaggTTCCTA---------------------GAAGTAA------------------TAACCAAATATATGG---------ACACCAACAATGAACCCACCAAGACAGAATTGAGGGAAATattaccattcacaatag-caccaaaaaaattaaatactttgatATTAAtgtaaccaaggaaatgaaaa--ccATAGGAT--------------TCttaag---gagatcaaagaagacattagaaaattgAAAGTTATCCCCTGTTTCTGGATATGCAAAATCAACATAGCTAAAATAACCATACTCCCAAATG-GATATATAGAGTTTATGCAACCTCAATCAAAATACCTACATAATtcctcacagaaatagagaaaataatcctaaaatgtATATGGAATA

a score=50374
s chr3            45164426 2543 + 160039680 CAAGAACAGAATGCCAAC---TCTAACAACAAAAATAAAAGGAAGC---------AACAATTACTTTTCCTTAATATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGC-TTACAGGAAACCCATCTCAGGGAA----AAAGACAGACACTACCTCAGAGTGAAAAGC---TGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGA-GACACTTT-----AGTAAAGCTCAAAGCATACATTGCACCTCACACAATAA-TAGTGGGAGACTTCAACACACCACTTTCTTCAAAG-GACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAA--GCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTT-------TAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGC--TTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAAC--TATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATC-TAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTAT-GAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaa-agatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaatta--actcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttca
s HiC_scaffold_1 121915853 2444 - 233722169 caacaaaagaaagacaaaggatTCATCAATAAACAAAGAAAGCAGTGTACTAGCTAATAATCAACACATCTTAGAATATATCTCGGTTAACAATCTAAATGctccaattaaaagaca--gatTGGAAGACTAGGT-CAAACACATAATTGAAAGGTctgctgcattaaaaaaaa---atgtcatgtaATCCAAAAGATACATAT------AgactaaaaattatttcaaaaactgTATTTCAAGAACTAAGACCATGAAAGCAAGCAGTAGCAGCAATTATAATACCAGATATAATAAACTTCAAGCTAACACATGGTAGAAGAGACGAAGAAGGAAACTACATTCTAGTTAAGGG-aaaatccaagaagaagagatattGAT---AAATATAAACGCTCTAAATATGGGAATGCCTGTGTTTATTAAACAACAACTGCTGAAATTAAAActtcaaataaaca------ctaacacagtGAGTATATGGGGATTTTAACTCCCAGCATTC--CAAAGagatataacaaataaacataaaataaataa-----cag-------agcTGAAACACTCGAACAGTTGGAATTAACAGTTATATACAGAGCATTCCTTCCCCCTATAGCAGAGTATGCATTTTTTTCAGCAACTCACGGTACTTTTGTCAAAGTAGATCACAGACTATTCCACCAAGcctaattaaataaatataaatgtactgCAGTTA-CCCATGTATTTCATTCGAACACTGT-GCAAGaaagtagaaatcaatgacagaagAAATGGTGGAAAAGGCAAAAGTTCC--TGGAAAAGTAATAATAtactcctaaacaaccagtggtTCACAGAAGAtatcaaaaaagaattt------ttttagaaatatggaagttaatgaaattgattgtacaagtaaacaaaacctTTGGGACACTATCATAGCTGTTCTGATTGGAAAGTT--TTGCAATTAAtactcacattagaaaaacagaggaaatcCAAGCAAACAcctttttttaagaaatcttaagATACTTGACAAATAACAAgctaa--------------------ggaaagaaattataaaagtaagaGTGGAAATTAA-TACTTTGAGACcaaaataacaatatgaaataagtCAGCAAagcaaagagctggttcttcaaaagactaaataaaatggACAAGCTCTTAGCAAAAcgtactaaaag----aaagaaaagattcacatAAATGCAATTAGAAACCACAAatatgaaatcacaacagatactACCAAAACCCAAAAGA----TAGAAACTATTTTGGAAAGTTATATTCtaacaaattagaaaattttaaagaaatggagagataGCAGAGCACATGCAAACTGCCAAAACT-AGCCAAGAAGATATGAATATACTTAACGATCCA--ATCAC---AAGcaata-aaatattcagtaataaTCTACCAACT--AAAAAGCCTAGTACTTATTGGATTTACAACTGAATTCTAT--GAATTTCTAAGGATATTATATTATCAATACTCCTCAAggtattaaaagaaatttaa--agaatggAGTGCTCCCAAAGTAATTTATGGAAATCACTATATTCCTGATCCCAAAACTAGATAAAAATGTAGCGGGAGAAGGGAACTATTGACTAGTCtcttaaatgaacaaaaatgccCAAATTCTCAATAAcacattggaaaataaaatgtagtatatTATCAAAAGCCtaatataccatgatcaagtgtgTTCCATTCCAGAGATGTAAGAATGGTACAATAGATGTAAGCCTATAAATGTAATAGATcatattta-aaaagcaaggtaaaaaaccacatgatcatatcaatagatgtagaaagg-cttttgacaaaat-cATCACtacttcatgataaaaatccttgaataaaataagtatagGAAGATTATACCTGGATATGATAAAAGCTACCTATAACACGGCAATagccagtattatactaaatggggAAAACCTAAAAGCATTTCGcctaaaatcagaaagaagataAGGATGCTCAGTATCACTTTTTCTAGGCAACATAGTA-TTGAAATATTAGCCCAAACAGTCaaacaagagaaacaaatgaaagagatacaTATAGAAAga---gaactcaaattatcattgATTGTAGATGACATGATGCCCTATACAGAAGACCTAAGTAACTCCACT---------------------AAAAACTTCAGCAACATACCAAATCATAAGATCAGTACTCAAAAAA--TATTAGGATTTATGTATGCTACTAATTAAC-----------------------TCAATACAATTCACAGTAGATTCAATATAAATGAAATAGCTAGGATTTAACTTAACCAAAGCAGTGAAGGACCAATA-AAAGATAATTCCAATGCTCTGTAAAAGGAAATTGATAacaatatcagaaaatagaatgatATCTCCTGCTCCCTGCTAGATAAAACCAATATTTTCAAGACGatcatactctcaaaa-ctgttatcagattcaatgcagtcccaatcaaaattaCTACAACATACTTTA

a score=14784
s chr3           45164449 1267 + 160039680 CAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAATATCT---------CTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAA--ATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGA---CACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTA-CGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAA----GCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAA-ATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGAT-----CCTTCTACAAAAGGCTATACTC
s HiC_scaffold_1 64285204 1159 - 233722169 CAGtaacagagaaacaatgtaaCAATAGGTATCAGTCAACACCTATGATTATTCTTAATGCAAATGATCATATCatcccaatcaaaagacacagactgacagATTGAGTCCTAAAACACAACCCAAC----------TTA----------ATCTTA------AAGAAAGATATAATctgaaaattaaaggatggaaaatgatacTGCATGAAACAGCAGTCTTAA-AGACAA--TGGGAGAATTATTTTATACTTAGATCAAGCGGA-----------AAGCCACAAAAGATTACAATAAAGTAAGTTACAACATACTGGTAAAGAGAATAACTCAACAGACAGTTataacaattttatatatatagtgcatctaat------------------------------tttgtaaaa-taaatacttCCACTG----TTACAAATACATAGG-------TTAATCAGGCAAAATGCtataaaagaaatatc----agaggTAAACCACAC--------------------------CTTAGAACAAATGGCCTTACTATATAACTATGGTATATTTTACTGAACAGAAACAGAATCAACATATCTCTCAGCAACACATGGAACTTAATGCTAA-TAGACTCCAACTTAGATTACAAAGCATacgtaaataaatgcaaatgaatcaaaataatctcatgcatattatcatgtCATGGTATAGTGAAACTACATACCAATGGAAAATGAAACCACAGA--GGCTATGTAAACACAGAGATTATATAATACACTCTTAcataatcaataggtcacagaaaaattaagaaagaaagttaaaaagttCTCAGATTTAAATAATATTAGCAGTATAATGTACCAAAACCTCTATGACACAATAAAAGCAATCCTATCAGGGAAGCTTATAGCTGTAaatacacacattaaaaaaaaagagtgagctcaaataTATAACCTAATGATGCCCCAGAATGTCCTAGGAGAATAAGAGCTATGCAAATCCA---AATTGGTGccaa--gtagtaaattat-aaaatcagagcaaaatttaataaaattgagactaaGATAAc-atacaaagaaccaatgaacCATAGAGCTGGTTCTATAGTAGGATAATCAATATAATCAAACccttaattaaa-ttattaaaa---aaagaagcaaagactcAAACCAATGCAATTagtaatgaaaa---aaacaaaatcatgg----tGAAAAACCTCTGAAATCCAGTATATAAGTAACTACTATGAAAACATATATTC

a score=38218
s chr3           45164516 3334 + 160039680 CCCAATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCAC--CAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGA-CACAGTGAAACTAACAGAAGTT---------ATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGA----TACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGC----CTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAA--AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTT-TGAGAAAATCAACAAGATAGA-TAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCT--TCTACAAAAGGCTAT----------------ACTCAACAAAACTGGAAAACCTGG-----------------------------------------------------------------------------ACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttat-----tccagggatgcagggatggtttaat----atacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatga---taaaagttttggaaagatcaggaatttaaggcccatacct-------aaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatag-----------------------------------------------------------------------------------tcacaaataat-----ataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaa--gatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttcaactattggaac--gagcaatttgcaaatttgtctggaataacaaaaaacctagg--atagc--aaaaagtctt--ctcaaggataaaagaa----cttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccag-----tggaagaaagacagcatt-ttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgctaattgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgaggaaaagccttgaagatatgggcacagggaaaaaattcctgaacagaagagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgca------------aggcaaaag--------------------------------acaccgt------------------------caataagac--------------------------------------------------------------aaaaagaccaccaacagattgggaa------aggatctttaccaatcctaaatcagataggggactaatatccaatatatataaagaactaaagaaggt---ggacttcagaaaatcaaataaccccattaaaaaatggggct-cagaactgaac---aaagaattctcacctgaggaata------ccgaatggcagagaaacacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattcc-acctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggc
s HiC_scaffold_1 83822754 3406 - 233722169 CCAACCAAAACCAcatagac------actgtct-caaaataaaactacaaccatcTACTGCCTACAGGAGACACACCTCATCTGAAAGGAAGCTCACAGCCTGAAAGTGAA--GGTAGGAAATGAAGCTCCATGCAGCAGAGCC-CAGAAGCAAGCAGGAATGGCTGTCTCACCTTCAGGCACAGCCGACCTCAAGCCAAAACTGGTCAGAAGATACAAAGATGGTCACTGCACAGTGGTGAAGGGGGTGACTCAACAGGAGGAAGTGAGACTCGTGAATATCTACGCATTGCAAATG------------------------------------GGCGCACAGGATG-AGTGGACACCAGGCAGCCATGG-GGTGGACCGCAACACCCCACTCTC------------ACAGTGAGGCCAGG---TGGACAAACAGCACAGCAA---TGTCAGAGTTTCTCCACACCATGGAATAAATGGGCCTAACGGATCCCTACAGAGTGCTTCACCCAATAGCAAAa------acattattctcagcagcacatgggacttttTCC-AACTAAACCACAC-TCAGACCCTAAAGCACGCTTAAACGACTTCAAAAGGACTGAGA--ACTCACTGCAAAGGCTCAGATCATAGCAGGATGGAGCTGGACACCAAGAGCAGAAGAACCCACAGAAATC--ACAAAAACACGGAAATTAAACAGTA----TATCAACGAGGAGTGAACAGGTCACAGAAAAACTCAGGGAAGAAAAACACCAGGTCCTAGAA-TCAAAGAAACGGAAGCC-CAAC--ACGCTGGCCCG-GGGACACCAGGGAAGTGGTGCTGAGC-AGAAGCTCACAGCTGCGAACGCTCAGCTACAAGCAG-AGCAGGCGCCAG-----GTGAGGGAGCCGGTGACGCTTCAGGAGGTCCCGGGAGACGAGAGAGAGCAAGGCAGCCGCCGGTTAGCAGCAGGCGGGGAAGCACAGAGGGCAGGCCCGAAATGA------TGAGAAC-----GGACTAAACACGGAGGC-----ACCGAGGCAGCGCTGCTTGTGGAAGAATAAACACGATCCATTGAATCCTTAACCAG-CTTCCTAAAATGAGAAAGGAGAAA--TCTGCATGGAGGAATTGAGAATGAAAAGGGC-ACATCACAACA-ACACTGCGGAAGTGGACAGGACTGTGGGAAGCTGCTCTGCAAACGTTTCTTCCAATAGCTTGGGGAACCCGGGGGAAAcagagggcctgggatttagctcagtggcttagggCCTCTCTGCAACGTCAGGTCCTGAGTTCGgtttctggtacaaaaagaaagaaagaaagagagggagaaattCCTACACACATGTGAATTACtaaaattgaatcaagaagatataaaaactctgACTAGACCAATAACAGGTAATGGA--------AgtgataaaaaccctaccaacaaagaaaagcccaggacctgatggTCT--GTCAAGAATTCTACCAGAACTCCAG---------GATTCGAACTCTGC---AGCTAGACCGAGAGGCAGGAGTG---------CTGCCCAAGTCAGGCCTGGGGATCG--GCTACCCTGATCCCAAAACCG-AGCCGGACTTAACCGAAAAACAGAACCTCAGGCCAATGCCGCC-----ACATAGACACAGAACTCCTCACC------------------ACCCAAAAGC------------TCAGGCATCGCGACCGAGTGGGCTTCACCTTCACCCGGGGCTGCAGGGATGGTTTGATCAGCACACGGAG---------------CCATCACTTCAACAGAACCAAGAGCAAAACCCACATGATCGTCTCAATGGATTCAGAGAAAGC-CTTGGCAACATTCAGCCCCCACTCATCATCCTAAAAATCCCAACcaaaacaggcagagaaagaccTTACCTCAAACTCAGAAATGAAGGAAGTCATTTGTGACAAACCTGCTGCCACTGTCACACTAAATGGTGA-AAACCAGAAGCTTCTCCTCTAAAACAAGGAACAAGACCAGCATGTGGGTTATCACCACGACTGTCCAGTATGGTGCTTAAAACCTCAGCCAGAGCAAttgggcaagagaaagaaataaaagaggtatttacagggaaggaaaaagtc-aaatatcCTTATTCATAGGGGACCCAATCCTTcaaagaa--gaccccaa--------------aactcctaGAACCATTAAACTAATTCAGAAAAGCAGCAGGACATAAAATAagctcataaaaattaaaagtatt--ccTGTACAACAATGAACCCAcccaagaaagaaatcaagaaaacaatcccaTTCACAACAGCATTTTAAAACCTGGATGGgagtggtggtgtacacctgtcatcccagcactccggaggctgaggcgggaagattgtAGTGAGTTCGAGAACAACCTGGgctgaaatatgtaggaattaacctaaccaagg-agtGAAGGAactttataatgaaaactatactgctctgaaaaaggaggttgaagaaaACATTGGAAAATGGAAAGCGATCCCCTATTCCCAGGGA--GGCAGAACTAACATCATCAAAACGGCCATACTACCCCAAATAAGGAGCAGATGGAGTGCAATCCCCATCCAAATATCATTGCCTgttctca-----cagaactagaaaaattcTACAATTTATACGGA--AACAGAAAAGCTGGGGAGTAGCTGGGGCAGTCTTggacagaagagaaaagaagaggcgTCTG-----------ATCCCAGACT--AAATCCTACTACACGGC-----TGGCAGGTGGAGCTCGGTACCG---TACGCAC---CAGGCAGGCTCGCTGCATGG--------------------------GCACCTCC-GCCGCCGGCTGCTGGAGAAGGG--------CCAATAAGGGGCCTGGAGGCAGGGCGGCCCCAGCCAGCACTC--TGCTCACACA------------CACACCGACGAA-------CGGGGCAGACCTGTGCTCTCACCCTGGGCTGAAA--GAAGTGGGTGAA-ACACTCGacaataaaacagaaaccctGAATCTTCTGGAAAACACAGTAGGAAGCAGTCTTGAAGACGTAGGTGTAGgtgaggactttctgaacaggagc-caatggcacaagaaataacactaagaatcaacaagtgggagcatatcaaattaaaaagcttcagcattcgggaggctgaggcaggaggatcattgcaaatttcaAGACcgggctgggctacacagtgagctcaagccagcctgaactacacagcaagaccttgtctcagacagacaaaaaatgaataaataaacaaaaatttaaaaagcttctgcaccaCAAGAGAAACAATCAACAGAACAAAGAGAATGGGGGAAATTTTCCCAGCTTTCCTCAGACAGGg--ctcatatctagaatatataaagaactcgtCAAGATTAGGGCCCCTCCCAAAGTAATAGACTTAATCAAAAAAAAGAGCCACTGAAATGAGTCTGATAGGAGCCGCTC----GGAATAAGGTGCCCCTGTGGCCAACGCGCACATGGGAAAGTGCCC-CCATTTTTGGCTTTTAGAGGAATGCAGATCAGAATATCACTGAGATTCCGGCTTCGTCCGAG---GAACGGCTAGCAGCAGGAAATCAAGTACTACCACGTGCTGGC

a score=14020
s chr3            45164519 1131 + 160039680 AATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACC------CATCTCAGG-----GAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAA--------------------------CTCTCAATTCTGA---------ATATCT------------ACGCACC-----AAATGCAAGGGCAGCCA-----CATTCA--------TTAGAGACACTTTAGTAAAGCTCAAAGCAT---ACATTGC-----ACCTCACACAATAATAGTGGGAGACTTCAACACACCAC-TTTCTTCAAAGGACAGATCGTGGAAA-------CAGA-------------AACTA-AACAAGGACA-------------CAGTGAA---ACTA-ACAGAAGTTATGG--AACAAATGGAACTGACAGATATCTACAGAACAT-----------------TTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATA-TTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCAT-GGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCA--AGAAGAAACGGGA-GACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTC---ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA-CAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTA--ATTAACAAAATCAGAAATGAAAAGGG
s HiC_scaffold_1 166393978 1246 - 233722169 aaaaagaagaaacagattggcagattAGTT-CAAAAACAAAGCTCAATGGGATGCTATAtctaaaaaaacatttaattttttaaaaacttgaaagaataaaaaatcatc--------aaaggatggaaaacaatgttccatgcaataggaacctaAAAATAAAT--GAGTTGCTGTCCAATTTTCAGA-AAAGTgcacttcaagccaaaactgatcaaaagagacataGAAAGTTATCATGTATCGATTAAAGA-ATAATTCTACAGGAAAAGATAATGATTAAAGATAAtgtaaaattctttcaaaactgacagagaaatatGTCTTTCCATGACGAAGAgcaccttaagaaattcatgaccaccaaaccagtacTCACGAAATTTTCAGGGATATCCTAAAAAGAGACAACAAATCTGACAGTGCCAAAAAGGTCTAGTAAAAATAGTGG----------CACATCAAACTTCATAAACAAACACTACGGGGAAAAAACTATCAGATAAACATTGTCACAACTACAGTAGGGACATCAATACTGTCACCAGTAAATCAACtacataaaaacaacaacaaagaaatgtAAGAGTTGAATAACACCTGAAAATCAGTGAACTTAATAAAGTTTTTCACCCAACCACAGCATAAATattctttatagcagcacacagaattttctacaaaataaatcacata-ctAGCCCTGAAATATGgttaaataatagtaaaaagaattgaaattatcacatgcatattatcagaccatagttcaataaaactagaaattgatgagaaaaaaacctctaaaaaattattaaaacaaaaggaaattgaaTGATATACTCTTGTATAATCAATGGATCAGAggtgaaattaaggaagaaataggaTAGTTCTTAGAATCAAATTAGTATGCACATGTAATATGACAAAACCTATAGCACACAATGACATCAAGCCAAAGAAGAAAGTTGATAGCTGTGAATGCCTACATCAGGAAAAACAGAATGAC------TACAAATAACCTAATACTGTACCTCCATGTCCTGGTAAAACCAGA---ACATTCTAAATCCAAAGTTCTCACAtgaaagaaaattgtaaagattagagaagaaattaatgaaatttag--agtaaaaacaatataaagaatcaatgaccCAAAGAgcaaattctttgaaagaataaagtaaaatagacaaacctctagccaattttaccaa---gaaaaggaaagaaatactcatatcaatgcaattagaaatgataaagg

a score=9816
s chr3           45164519 779 + 160039680 AATAAAAAGACATAGACTAACAGACTGGCTACACAAACAGGACCCAACGTTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACAC-ACCACTTTCTT--CAAAGGACAGATCGTGGAAAC---------AGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT-TTTTAGAGTTTAATGAAAATGAAG
s HiC_scaffold_1 66390200 718 - 233722169 aaaaaaaaaagacagac-aacagAGTGGATTAAAAAACAAGACTCAACTCTTT------TGCAAGAAATGTACCTCACTAGCAAAGAC----------TAAAAACGAATGGGCAAAGAACAATATTACATGCAAATGAAACCTGACTGCAATCAGGAGTA-CTAAACTCATATCTGACAAAGGAAGCTTCAAAACAACATTAGTCAGATAAG-CAA------ACACTATATACTGATAAATGGAACAGtcc--------------------ataaatatatgtgcaccaaacatTACTGCCCttgatttcataaaacaaatactactcAACAGAAAGAGACATAAAGGTCCCAATACTGTAATAGTGGTTGAGTTCAATATTAAGATGATCCTACCAATAGATAAGCCATCCagaccacccccccaaaaaatcaacaaagatacCTCAGAATTAAAGTACACCATAGACCAAACGGACTTAACAGGCGTATATGGAACATTCCATCTGACAATTGTGGAATACTTATTCTGCTCAGAAGTTCATGGACTGTTCTCCAAAATAGGTAATAGCTTAGATGATAAAGCAAGCCTCAGCAAATACAAACA---GGAAAGAATTTCTTATACATTATCAGcttataatggaatgaaactagaaatccaGGGCAA-AGAAATCATAGAAA----------CTACATAAAcagaataa--------tcagtg-------ggtcactgaAGAAATGAGGTAGAGGCTAAAAGAATAATTCacaaggtaaaaaaaataaag

a score=15364
s chr3           45164539 1034 + 160039680 CAGACTGGCTACACAAACAGGA--CCCAACGTTCTGCTGCTTACAGGAAACCCATCTCA------GGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAG-----AAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCA-----ATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGG-GAGACTTCAACACACCACTTTCTTCAAAGGACAGATC-GTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTA-AGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGC--AAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT------TCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG
s HiC_scaffold_1 29924627  969 - 233722169 CAGAATGGATTCAAAAGTATGAAATTCAACTATATTTTACCTATTGGAGACATACCTCATCCAAAATAAGAAGGATGGAAA-----TGAAAATTagaggatgaaaaacagtattt----------gaCTAGAGCCCGAAAACAAGCAG--------ACCTCAA-----GACACAGatgacttcaagccaaaactgatcagaagagacaaaaacgAGCACTTCAGATT--GtgaagaaacaattcaacaggaagagatagcATTAGAATGCTTATGATTGTTGCAC----------ATCagctttataaaacaaaaactc------agatTTAAAAGGACAGATAGC-CACAACACAGTCATAGTAGTGGAACCTTGGTGCCCATCTTTTTCAATTAGATAGGTCAGCCAGACCAAAAAATCAACCAAGAAACATCAGAGTTAAAccacacctttgaacaaatggacttaata---ctCTAT-GCACGTTTCATCCAACAATAAtagaacacacatttttctcagcagaacatgaaactttttccaaaatagagcATATCTTAGGCCATAaagcatgtttaaataaatgtagaagAACTAAAACAATCCCTTGCATACTATCAG----TTAAGAAGTAGAAAGtagaaatcaacagcagaaaaagcCACAGAAACTATACAAACACCTGGAgattaaatattacattattgaataatcagtggatcatagaagaaattaggaaagtaat-aaaaaattcgTAGAATCAAATGACAGTGGACAGAAAACATACCAAAACTCATGGGACACAATGAAGGCAGTTCTAAGAGAGAAGTTTATAGCTGTAAAAGCATATGTTAAAAAAAgagtgattctaaatac------cctaatGATAC-------AGCTCAAGAACAATGAAAAGCTgaaactaacagaaaaaaattaga---------------aagagcagagaaaacatcaatgaaattgagactaaaagtAATATAGATGCTCagtgaatca----------gagttggttctttgaaaggctGGAAAAG

a score=49838
s chr3           45164540 3451 + 160039680 [encoded data, 4371 characters]
s HiC_scaffold_1  6285527 4139 - 233722169 [encoded data, 4371 characters]

a score=64759
s chr3           45164611 2882 + 160039680 ACTACCTCAGAGTGAAAAGCTGGAAAACAATTTTCCAAGCAAATGGACTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTC-----AAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTA----------TGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGC---CTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAA----GCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAA-TGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAA-----CCAAAAAAAGCCCAGGACCAGATGGGTTTAGTG-CAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggc-ccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaac----------------aggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaactt------ccaactcaattcttcaactat--tggaa-------------------------------cgagcaatttgcaaattt----------------------------------------------gtctgga--------------ataacaaaaaaccta--------ggatagcaaaaagtcttctcaaggataaaagaacttctg----gcggaatca--ccatg-------------------------------ccagacctaaagctttactacagagcaattgtga-taaaaactgcatggtactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgctaattgatccatacttatctc-cttgtactaaggtcaaa--tctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtgaggaaaagccttgaagatatgggcacagggaaaaaattcctgaacagaagagcaatggcttgtgctgtaagatcgagaattgacaaatgggacc
s HiC_scaffold_1 56713273 2940 - 233722169 actgactaaaagtcaaaggatagaaaacaatactccaccCTATAGAAAgccaaaaaaaagcaagagtagccaaTTG-----caaacaaagtggatttcaagccaaaactgatcagaagggacaaagaagatcactacatattgACTAAAGGAACAATTCAGCATAAGAAAC----------AACAATGTATGCACCAAGTACTAGTGCAccaaacttcataaaacaaacactaatggagATTTTATAAAATCAGATAA-ACACC-AATACAGTTATAATGAGAGATCTCAATACCTGACTGTCACAAGAGGACaaatcaactagataaaaaatcaacaacaaca-------actaatcagagttgaaccaaaactttgaacaaatgggcttaaTAACtctctatagagtgttccatcc---aacaacagaatacacattcttcttggcAACATATGTGAC-TTCTCCAAAACAAATCACCTACTAG--CCCAAAAAAGGCactcttaagtaactgcaaagtaTTGAGATAATTTCATGcacattatcagatcatagtgccacaAAACTAGAAGTCAggagcaaaagaaaccacagaaactatgcaaacacatggaaa-tgaataATACCCACTTGAATAAT-CAATGATTCAAGTAGAAATAAGGAA-GAGATTAGACAGTCCCTACAATCAAGCAATAATGTCACTACAACATACCAGAATGTATGAGACACAAGGAAAGCAGTGCTAAGAAGGAAGTTTACTGTGGTGAATTTCCAC--------ACCACAGAGCACTCAAACAGATGACCTAATTATACA-CTcaacattttagaaaaacaagaacaatctaaAGTTATGCaaggaaaat------------tttataaagatcagagcagaaattaaaaaaatcaaaactaagaa---------aaagaatta---aattgaagagttggttctttgaaagaat--aaaaaatagaaaaattattatcCAGGTTtaccaaaataaggaaagaaaagacccaaatccatgcaattagaaagggaaaatgcaaaaatcacaatGGAT-TTGCCCAAATCC---AGATCATTGGTAACTAATATGagaacttatattctaataaaatgggaaatacagaagaa------agattcttagatacatacaAAATACCGGAGTTGAACCAAGAGGATATGAAAATCCTGAGTAATCCAGTAAGAGTTGATGAAACTGAAgaag-taataataattttaaaaatgatcaactAAGAGCCCAGGTCCCAGTGGATTCACTGCCAAAATTCTATAAcaactttagagaagatctaaggCCAATAGTCCTCaacttctttaatgaaattgaaagagaagcagcacTCCCCAATTAATTCCTGAAAGTAAGCATTGGCCTGATTCCAGAATCAGAAAAAGATCTAACTAAAAAAGGGAACAATAGGCCACTctctctaatgaatatagatTCAAAAGTCAccaataagatactgacaaacagaatgtgtGAAATCAtcaaaa-gatcatacatcatgaccaagtaagattcattc--------caggaataattcaacatacacaaatcaa------taatacaccacataaacagaagcaatggCAAGAATcat---atcatctcaatagacatagaaaaa--gtGTGACAAaacccaacattcattcattataaaaaccctg--aagaccACAAGTACAAAAtgtcttatctcaatctgataaaatccatctatgacaaatcaatagccaacatctac-taaatggagaaaaatggaaatcttctcttctaaaatcaggaacgagATGAGGATGTCTGCTATCACCACTCCTGCTTAAAGTAGTTTtcaaaacactagccagagcaattagaaaagagaaaaaaataaaagaaatgtggataggaatgaaaga----aaaatattactatttGCA-ATGACACGATTct-tacacagaagacccccaaat-----------gaTTCCTAGAATGAATTACCAAATTCAGTTGCATAGCAGAATGCAGTCATTGCTCA---AAATCAGTTGTATTCCTGCACATGAGTAATAAACTcaagaaaggaggggaaaaagaagagagaaattagTGGAACAATATGTTTCACAATAgcgtttaaaaaaatgaaatatttaggcattaacctaaccaaggaagtgaaagacctctacaatgaaatttacaaaactctgaaaaagaagatcaaagaggacttcataaaaaggaaagatattccCTTTTTCTGGATAGGGAgaaccagtatagtgaaaatgatcatatttccaaaactgttacacagatttaatgcaatctcaatcaaactCATAGAACTAGAGCAATCTTTAAATTGCTATGGAACCAGTtgtcatggtggtgcacgcccataatcccagcacttgggaggttgaggcaggaggatcaccacaggttcaaggccagctactacacagtgagtctgggccagtctgaactacatagtggagaccctgtctcacacacacaaaaaaaaatccatatagaATCAAAAGAACTCATGAATAGCAAAATCAATTCATGGCAATAAGGGCAAGACAGGATGCACTGTGATCCAGATTCCAAATTATTCTATCTAGATATAGTGGTTAAAAGCTGTATGCTTTGGGAGCAGGGA-AGACA--TgaataaatggaacagaatagaggatgcaaaagcaactccaggaatactcagtcaccttatctttgattatGGGAC-AAATGCTTTTGCTGGAGGAAAGGGagcctcttcaacaaatggtgctgggaaaattggctttccacatgctagaGGTTG------AATCTATACTCATTTCTCTTAAAAATGGGTCagagttctaaat--attaaaaaatttaatattacaGCAGagacacttaatctgctggagtACAAAATAGgagaaattcttgaagacataggtataggcaaagactttctgaacagaa---ccctggcacaagaaataatgccaacaatcaacaaatgaaatc

a score=28219
s chr3            45164619 1586 + 160039680 AGAGTGAAAAGCTGGAAAACAA-----TTTTCCAAGCAAATGGA---CTGAAGAAACAAGCTGGAGTAGCCATTTTAATATCGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTC--ACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGG----TCACAAAA----CAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATA-----AATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAG-ACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGG---AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACAT--AACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAA-----AGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCA----ACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctctta--tgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaat
s HiC_scaffold_1 181954360 1526 - 233722169 AAGGTAAAgggctggaaaaagaaaagatacactaCACAAGTGGAAACTAAAAGCCAGCAGCAGGAAGAGCTAACCTCATAGCAGGTAAGGCAGACTTcaagt--aaaacatttaaatgagACA--GAGGGTTACCGTAGACTGATAACATTATCAATGCACCAAGAAGATAGAACAATTTT----ATATATGTGCCAACCACAGGGCCACCCAAATATGTAAGCAAA----TATGAGAtctaaaaagagacagagagaccccAAAACAGTAATTGTTGAGGACTCCAGTGC-CCACTTCCTGTAATGAACAGAtcatccagacagaaaatcaacaaagaaacatctGTGTTGAATCACACTGTAGAATAAATGGACCTAACAGACATCTGCAGAACATTTTATCCAACAGCAGCAGAGTATACATTCTCATCAGCACGT---GGAACATTCTAAAAGATAGATCATA-AATAGAACTTTAATAAAAACACCAAGTCTCAATAAACGTGAAAAAACTGAAGTGCTATCATGTAACTTGTTAGATCA-CATGG---------------AAACAACTACAAATTCCTAGTAATTGAAAGTACGAATAcgtatggaaattgaataaca-tgtTCTATATGACCTATGgataatttaagaaattaa-----aaattgaagaaatctctggaaagaaatgaaaatgtcagCATAACGTATCAAAACCTGTAGAACACAGCTAAAGCTGTACTGAGAGGAAAATTGGAAGCAGTAAAATCATTCATTATGAAA---AAAAGGTCTTAAATAAACAACCTTACAGAGCACCTGAAGGATTTAGAAAAGTACAAACCAGAAGTA--CAAAAGGATTAATAGAGGGAAGGTAATAATGAAGATCAAGGCAGAGATATAtgaaatcaaaactaaaaacaatg---aaaagatcaGTGGTACAGAGTTGTTGGT------AAAGGATGagcaaaatagataaata--tagcTAGACT-GCTagccaagttaaaaaaaagatacaagt----aaAACCAGATATAAAAAGGGAGACTCTAAATGATGGTTAGCACAGAAGAC---AAAGTCATAAGAACCTACTATAAAAAATTATGTGCTTAAATACTGGATAACCTGGCAGAACTGGCTAAATTCCTCAGTACATGCAACCTGTCAAAACtcaattaaataacaaaaaatgtaaacaaatgaaCAGTC--------TGTAATGAGAT---------------TAGTccctcacattaaaaaaaaaagtttagaaactGCTGGTATTATTGCtaaattctaaaatatgttt----AAGAATTAATCCAAGTTCTTCTAAAACCcttctaaataaatgaaatggaagGAATTCTGCCAACTTCTTTTTATGAGGCCAACATTGTCCTTCcaccaaaaccaaacaatgatAAGACAA----GGAGGACTGTGGGGCTATATCTCCCCGTGGGCCACAGAGGCAGAAATTATCAACAAAAT----ACTAACAAACTCCAATAGCTCAT---GGAAAACATACATCATAATGAAGTGCAATTCATCCCAGAGAGACATGGAtggtttaaaatatgcaaatcaataaatgtaat

a score=15253
s chr3            45164664 918 + 160039680 AAACAAGCTGGAGTAG-CCATTTTAATAT-CGGATAAAATCGACTTCCAACCCAAAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACA--GATCGTGGAAACAGAAACTAAACAAGGACACAGTGA-AACTAACAG--AAGTTATG-----GAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAA-AAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAA--AACAGGCCTCAATC--------------GATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAA
s HiC_scaffold_1 167009644 906 - 233722169 AAACAAGCAAGAGTAGGCTATCTTGTTTTTCAGATACAGCAAACTTTAAGCcagaactgatcagaagagatcAAGATGGCCATTACCTACTGGTAAAGGGAACAACTCAACAGGAAGacttaacaattttaaatatctatgcatTGAATGCTGGTACACCTAATTGCATAACACAAAAACTACTGGACTTAAAAAGACAGATGG------ACACAATACAAG-----GACTTCAGTGAGATACTAGCTCACAATGATATAGGTCACCTAAGcaaaaagtcaagaagagtcaagaaagaaatattagtCAAACTATACCACTGAACAAACTGGTTTAACAGATATCTACAG-----TGTTTCATCAAATgacaacaaaatacatttttctcaatAGTTCATGGAAAATTTCTCATAATAAACCATGTT-TTGGCCATGGTTAATAGACCATGTTTTAGGTATgctctaaaatacaaaaa-attgaaacaatccCCTGCATACTATTAGATCATAAC-----AAAGCTAGAAATCAACATCCTAATAAGCCACAGAAACTACACAAACATAGATAGACTAAATGATATGTTATTGGATAATCAGTggatcagagaagaaataagcTAATAAA----AAAGTTCCTGGAATCAAATGACAATGGAATAACAATACACCCAAGTCTATGAAACACAATGAGAGCAGTTCTAAGAGTGAGGGTATTGACTATACCTGCACACATATAAAGAATAGAATGattccaaataaataacttaGTGATGTACCTCAAGTTCCAAGAAagacaagaacaatccaaatctaaaattaataga----aagaaattataaagatcagagtggaaattaa-----tgagattaggaaaaa-----aaaagaatcaatgaatcccagatttggttctttgaaaggatggGGAAGGGGTATAAA

a score=38596
s chr3           45164727 1905 + 160039680 AAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAACTCTCAATTCTGAATATCTACGCACCAAATGCAAGGGCAGCCACA--TTCATTAGAGACA--CTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCG--TGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAA----GCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACT---TTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGA--GTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACT--CTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctct-tatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagac-aaaaaccacatgatcatctcgatagatgca--gaaaaatcatttgacaatttccaacacccattcatga--taaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaag--------------ctggaagcaatcccactaaaatcagggactagacaag-gctgcccactttctccgtaccttttca--acatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttc
s HiC_scaffold_1 67242780 2032 - 233722169 AAATGTAAAGGAGGTTACTACATCCTAGTAAACCAAACAATTCAACAGgcagagataacaattataaatatatatgcaccaaacattgGTG-AGTctcaatttcataaaatataaactacagaaaaatataaGGACTGATAAACACC-AACACAATCATAGTAGGAAACTTTAAGTC--CACTCTCACAAACAgacaggtcaactagacaaagaaa-tgaagaaagaaatatcagagttaaatCACATcattgaacaaatggactttacCTACATTTGCAGAACATTTCATTCAAAAACAACAGAATGTACCTTTTTCTGAGCact------aattttctccaaaaaagacC-TATATATCATCCTCAAACAA----------ATATGCAAGATTTGAAATAATCTCTTGTATATTATtggataatagaaaaataaaattagaaatcaacagTTA-AGAACTCATAAAAACAATGCTAACAT----ATGGAAATTCAATAACACAGTCTTGAATAATC------------------------AATAAGTCACAGATTCAGTTCCAAGAATCAAAAACATTAGCAACACAAAATACCAAAACCTATGGGACAGGACGAAAGCAGTTATAAGAGAGAAGTTTATAGCTGTAAATGTGCTATTTAGAAAAATAAGGTGATGACAAAT------AACCCAATAATGTATCTCAAGatattagaaaaacaagagcCATTCCTACCCAAAAcctgaagaaggaaagaagttatACGTGTCAGAATAGAAATTAAGGTAAttcagaccaaaacaa--------------aaacaaaaaaagagtagtTTCCTTGAAAGTATAAacaatacatataaatatttagccaaacttttcaaaagatagaaagaaaacgTTTATACAAATGCAATTAGAAATCAAAAaggcaccaggcatggtggcacaagcttgcaatctcagcattctggagactgagacaggagcatcacagTAAGTtcgtttgaggccagtctgggatacatagtgagtttaagggcagcctgaactgcataatgaaaccctgtctcagaaatgcaataaataaacaaataagctaGAAATCAAAACTAACACTGCTGAAATCCAGAGGGTTATAAGATTATTCT--GAAAACTTACATTTCAATAAATTAGAGAaactagaagaaatggataaattcctaggCACATATGACTCACTGAAAgtggatcaagaagatatgaaaactCTGAACAAACCTATAACAGGCACTGAAATTGAAGCAATAATAATTG---TACTGACTAAGAAAATCCCAGGACCTGATGCAGTCACTGCTGAATCTTaccagaaatttagagatgaactGATGCCTGTGTTCTTCAGTATCTTCCATAAAATTGAAAGTAAAGAAACTTATCACCAAACTTATTCCTTAAAGTTAGCATTGCCCTGATAACAAATTTGGACAAGGACTcaacacaaaaagaaatgtacaggTCCATTTCCTTaaatgaacatagattc-aaaatCCTCAACATGATCCTTGcacacagaatgaaaaaaatcttttaaaaaatcatataccATGACAAAGTCAGCTTCATTCCAGAGATGCAAAAATGGTTCATCatacaaaaatcaaagaatgaaatacatcatataaacagaaataaggataaaaaatcacataatcatctcaatagatgcatctCAAAAGCCTTTCACAAAATCCAACACCTACTCATGATTTAAAAAGTCAGACAAAAATAGGTAGGGAAGGAACTTTCTTTAAACAGATAAAAGCTA-TTAAGTCAAATCCACTGTCAACATCAtgctaaaaggaaaacaaacaaacagaaaactctgagaacattccccctaaaatcagaaacaagacaagaatttATCACTCTCCCTATTCCTGTTTGGTATATAGTACTTGAAATCTTAGCCAGAGTAATCAAGCAAGAGAAAGCAATAAAAGGGattcaaataggaaaggaagaattcaagCTACTTTAATTTGCAAAGCACATAATCCT-TATAGAGAAGACTCAAAAA---ACACCTGAAGATTTTTAGaactaataagcaaattc

a score=6416
s chr3            45164823 309 + 160039680 ACATTCATTAGA------GACACTTTAGTAAAGCTCAAAGCATACATTGCACCTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCTTCAAAGGACAGATCGTGGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATAC-CTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTG---GTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGT
s HiC_scaffold_1 207020789 300 - 233722169 ACATTAATCAAATATTAGGATACTTTAGGGGAGGATAGAGT-----------CCAATACGGTAACAGTAGATAAATTTAACACCCCACTGTGAGCAATGGAGACATCATTCAGACAGAAAATCACCGAAGAAATAGCAGAGCTAAATTGAAGCGTAGATCAAACGGACCTAACAGGTATCTGTGAAACATTACATTGAGCAACTGCAGAATACACTCTTCTTGTGAGCA---CATGGACTATTCTCCAGGAT-----AAATAGTGGCAAACTACAAAACAATTCTGAATCAATTTTGAAACACTGAAATCATACCAAGT

a score=14692
s chr3            45164926 515 + 160039680 GGAAACAGAAACTAAACAAGGACACAGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAA------GCCAACATTCCCATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAA
s HiC_scaffold_1 127275207 512 - 233722169 ggaaaaagacaaaaaaaaaaaaaaaaattaaagcaataacaGC-ATTGatcaaatggacttaacagataGCTACAGAGAATGTCATTAAATGACAACAGAATACACAATTTTCTCAGTAGCACATGGAACTcattccaaaatagaccacattttAGATCATAAAGAAtatctaaataaatacaaaagaatttaaataatcttCTGCATATTATTAAATcataacagaataaagctaaaaatcaataggaaaataaaccacagaaattaCATGCCAACA----CACGAAGATCAAAGAGTACATTACTATATAATCAAtacatcacagaagaaatcagggaTGAAGTAAAGAAGCTTCTAGAATCAAATGGCAAAGGAAGCACAACATGCCAAAATGTATGGGACACAATGAATGTAACACCAAGAAGGGAGTTTATAGTTGTGAGTATATACAATAAAAGAAGTGAGCAATCCCA----AGTAACTTAATGATGCATTTtaagttcctagaaaaacaagaa

a score=53003
s chr3           45164951 2195 + 160039680 AGTGAAACTAACAGAAGTTATGGAACAAATGGAACTGACAGATATCTACAGAACATTTTTTCCTAAAACAAAAGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAAGCCAACATTCC-------CATGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAA--------ATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAG----GGCACAGGGACAAAATCCT--AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgat-aaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttct--caatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaat-ctctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttca-actattggaacgagcaatttgcaaatttgtctggaataacaaaaaacc-taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaa----ctgcatggtactggtatagagacagacaagtaga
s HiC_scaffold_1 97120744 2136 - 233722169 agaaaacccactagaA---ATACAGCAAATGGATGTGGTAGATGTCTGCAGAATGTTCTATCCTAcaaaatcaaaatacacattcttctctgctgcTTATAAGACAGTCTCCAAATTAGAACACATACTAGCTTatagagcatgcttaagtaagtgaaaaggaattgaaattatctcatgcgtATCATCAGACCA----AGCATAG--------TGCAATGAATTggaaatcaaaagaaatcacatatTTCATAAACACATG-CAATTCAACAATGACCTCCTGAATAATCATAGGGTCTCaggtgaaatttaagaaaaagttaGACAGTTTTACCA--TTAAGGCCAATG------CAACATACAAGAACTTATGGGGCACAATGAAATCAGTCCTATGAGAGAAATTCATAGCACTGAATACCCAagtcaagaaaacagagcaagctcaaataaacaacttaacgCTAAAACTCAAGTTTccagaaaaggagcaagtcaa---gcccaatgtTTGTACAGTGAAGGAACATTAGAGATATTGAAGCAGAATAATG----CAACAAAG-----ATTAGGAAAACTATATAAAGAATCAGTAGATTGAATAGTTAATActttgacagattaaataaaactgataaactctTAGACAAccttctcaaaaaaacaaaagaggaaaaaaatcctcaaatctatgcaattagtaatgaaaagaatgaaatcacaatACTTTCTGCAGAAAT---GTAAGTCAACAATCTCTACTTCAAGAACCTGTgttctaataagatagaaaacacaaaagaaatggatagattcctagatacacatgagTTATCacagatgaataaagaagatataaaatttctaaataaaccaatgtcaatcagtgaaattgaagatacaattaaaaacctacaaacagagaaaagcccaggacctagAAGATTCCTTTctgaattctacatgaaatttaaagaatACCTAAATCCGCTACTTTTCAAATTCCTTAATgcaactgaaagggaagcaacgctcccaaattcattcctgaaattAAC--CTATTTTGATGCCAGCATCACAGAAGGTTCCAACCAAAA-AGAGAGCTATAGATCAATGTCTA--ATGAACCTAGACACAAAAATCC-AAATaatatactggcaaacagaatgcagca----atcAACAAGATTATATATCGTGACCAACTAGGACTCATCCCAAGTATACAGGGCT-GTTCagaatatgcaaatcaataaatataatacattaaattaacagagccaagaacaaaatgTATATGATTATCTCAATGGACGCAGAAGTG----TTGACAAAGTTGAACa-ccgttcatgataaaaaatactatagaaaattggaa--taaaatctTTATCTCCATCTGATGAAAGTCACCTATGACACACCATCAACCAACAT---ATTacatggataaaaactgaaaactttcactctaaaatcaggaacaagacaaggatgttcattatcaccac-tgttatcagcatagttctggaaacattagccagagcaattagagaacagaaaaacataaaatgaataatgataataaaa-aagaatttaaattatca-tttctgCAGATGATATAGTACTCTAAATAGAAGGCCTCAAAAATTCTGCCAAAGACATTCTAgagttaataatcaaatttaataGCGTAGATGGAcac--agtcaacactcaaaactcaattgC--------------------AACTCACTGATATTGACATTAGGGAAAAAACATCTTTATAATagtattcaaaaaataaataaaatacctaggaatcaatgtaATAAAGTAAGTAAaggatctttacattgaaaact--aaatactctgaaaaaggagattgaaagatatatcagaaaatggaaatatacccCTTGTTATTGTGTAGGAagagccaatatagtgaaaatttccaccttccaaaaattattatacaaatttaatgcaatcctgatgaaaataccaatagcatatcacatagaattagataaaacagttctaaaaatcatttgtaaccagaagagaccttaaaatagcaaaagcaattttgggtTACAAAGGCATGGAAGG-GGCATCATAACtcatgatttgaaattatactacaaaactactatgataaaaataacCATCATGGTACCGt--cagaaacaagcaaacaga

a score=45545
s chr3           45164988 2455 + 160039680 ACAGATATCTACAGAACATTTTTTCCTAAAACAAA--AGGATATACCTTCTTCTTAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA-CAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTATCCTATCAGACCACCATGGCC-TAAGACTGATCTTCAATAACAACATAAATAATGGAAAG---CCAACATTCCCATGGAAACTGAATAACA--CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAA-AGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCA-AACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTC--ACCCAAGAGG-AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAG--GAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA---AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGA-------------------------AATCCCA-------------------------------------AACACCATC--------------AGATCCT-TCT-------------------ACAAAAGGCTAT---ACTCAACAAAACT----------GGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTAT---TAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCA-AAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgct----aaccaaatccaagaacacattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagac-------aaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaa----------------ggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaaatcagggactagacaaggctgcccactttctccgtaccttttcaacatagtactt-gaagtattagccagagcaattcgacaacaaaaggagatcaaggggatacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatatgatagtatatataagtgaccctaaaatttctaccggagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctttctctatacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcgtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatctctgaagaaagaaattaaggaagatctcag--aagatggaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaacttccaactcaattcttcaactattggaacgagcaatttgcaaatttgtctggaataacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatcaccatgccagacctaaagctttactacagagcaattgtgataaaaactgcatggtact---------------------------ggtatag----------------------------------------------------------------------------------agacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcgtgtagaagaatgctaattgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagaca----ctgaaacttatagaggagaaagtgaggaaaagccttgaagatatgggcacagggaaaaaattcctgaa
s HiC_scaffold_1 72283543 2558 - 233722169 ACAAATTTCTAAATATCATCCTTCACTAAAACAAATCAGGGCATAC--------TAAAACATGGCTGG-----TTCCAGAACA------AGAGTAGGTCAATAAAACAAGcttaagaagatgtaaaagaattgaaattataccatgtatatttttatatc-ctaCAGCAATAAAGTTAGAAAtcaattacaaaagaaaacacaaaaattatccAATG----CATGAAAACTAAACAATAAGCTCTTCTTCAAGGGATTAgag---aagaagaaatcaaagaagatgtTAAGACAGTTTCTAGAACTAAATGATGATTGCAGTA-AACATAATCAGAATTTAAGGGACACAACAAAAGCAGTTCTAAGTGGGAAGCTTATAGCTGTAAATGCCCACATGAGAAAAGCAgagcaagcccaaataaataacctaacaaTGCTcttcaagctcctagaaaaacaagaa--caattcaaACTCAAAAGTCATCAAAAGGGAGGAAAACATAAGGGTTAgatcagaaatcaatgaaattgagaccaaaaaaaaaaaaaaaaaaaaaaattcaatgaacCGAGTtaattcttcaaaagaataaacaaaacagacaaaccctTTGCCAAGCTCATCAatgtaaagcagaaaaaaaagacccaaatcaacacaattagaaataaaaacggtgaaatcaaaatggataccACTGAGTCAGGCGTGACagcgcatgtctgtaatcccagcactcaggaagttgaggtaAGAGGTTTCCCttactcaaggccaacctgagctacaaatgagaccctgtctcaaataacaaaaaaacaaaacaagacactgTGGAACTCAAAAAGATTATTATGTTGCAAGGAATCCAGAAGAAAtg---agattcctagatatatatgaattattaaaactgaaccaagaagatttaaaaactctAAATAATCC----------------AGGGAAGCGAtcataaaaaaaaacctaccaactgagaaaagcccaggtct------tttCACTGCTGGATTGTACAAAAACTTCAGGGGAAGATCTAACACCAGTGttcctcaagctctttaatgaaaatgaaaaagaaagaatatccCCCAAATCCT----AGAAGCTAGCACTACCCTGATTCCACAACTAGACAAGGATCCAACCAACAAagtgaactacaggccaatctctttaatgaatatagacgcaaaaatccttaataaggtACTGACTGGCAAACAGAGTATaatgaatcatcaaaaagatcatgcaTAACGAACAAATTGGCTTTATCCTGCAGATGCAAGAATGGCTCAGCATAtgcacatcaataaatgtaataaat--aactAACAGAAtccaagatcttttaaaaaaatgacatgatcatctcaatagatgcaaaaaaggcttctgataaaatccaacagt--ttcctgaaaaaaaaaaaaaaaaaaaaacaaactcaagaaaATAGGTAAGGAtggaccttatctcaatctgataaaatccatttaTGAC-TACTATTAATTAATACCATATTAAAtg-------actgaaagcttttcctctaaaatcaggaacaagacaagaatgcccACTATTACCATCCCTGTTCAACACAGTACTTGGAAAaattagcaagagcaattaggcaagaaaaaga----aaaggaatgtggatagaaaaagaaga----aaaatttccattATTGAAGACT------TAGAATACTCAA--------------CACACCAAAGGACTCt----ctgaataaccaaattcagtaatgtagtagGATATA--------------AAGTCAATAGGGTTCCTATACACTAATATGAACC---TAAACAAAGAAATGAGG--AACAATACTTTTTATAATAGCATGAAGAACCATTAAATATATAGGAATTAACTGAACTAAGG--------GATCTCTATGATAAAAACTACAGTATGCTGAAAAAGGGAAATCCAGGAGATCATGGGAAAAATGGTAAGATAGCTCCTGTTCCTGAACAGGCaaaaccaatatagtcaaaatggtcatacttccacaACTGATACGtggatttaatgtaa------------ttccaacaGTATTCacaaa--actggagaaaaaaatcctaaaactcatACAGACCAG-AAGAGACTCAAAATAGTAAAAGGAATCATGGATAACAAGAGGAAAGTGGGGAGCTTCTTAATCCCAGACTT-GAGTTGGATTGTggagctacaatgataaaaatagcagggtactaacacaaaaacagacaccaggcccgagggtttagctcagcggtttgAGTGCCTACCTaccaagtgcaaggtcgtgagttcagtccctagtaccaaaacaaaaacaaacaaaaaataaaacagacaagagGATCAATGTAACAAAATAGAGGGTGCAAAAACAACCCCAAATACATTCAACAATTTGATATCTGACAGAGTGGCCAAAATCAAGCACTAGAGGAAAGAAAGCCGTGTTAGTAA----TGCTGAGAAAACTGCCTCCCTACCCGAACAAGACTG-----------AAATCTCTCAtcaggcactaaactaaaattaaaatagatcaa-gaactaaatgtttaaaaagaaatagttgctgaaa---------gataaaatagttaaaaCTCTTG-AGTCACTGGCGcagacaaggactttctgaa

a score=8582
s chr3            45165054 463 + 160039680 ACCTTCTCCAAAATTG-ACCATATAATTGGTCACAAAACAGGCCTCAATCGATACAAAAATATTGAAATTGTCCCATGTAT-CCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATAATGGAAA---GCCAACATTCCCATGGAAAC-----TGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 135153238 439 - 233722169 ACTTTCtccaaaattttgccaaatactAACCCATAAAGCacacttaaataaatacaaag---------ttatCTGATATATGAAaatcatagtacaatg----aaactggaaaccCAATTGCAGAAGAAACAACAGAATTATGTAAACACATGGATATAAACATacttgaataa--------tcaatga-------gtcatgggagaaataaaggaagaaagtagATAATTGcattaataaaatgataatgcCATTTCAACATACCAGAGCCTATGGGGCACAATGAAATCAGTCCTAAGAGGGAGATTTATAGCTACAAATGCCTACACCAGAAAAATATGgaaagcccaaataaataacctaatgaaaCATCTaata-tccaacataagaacaagGCAAAT----CCAAAGCTAGTA-CTGGATGGAACTTACAAAGATCAGTGTAGATGTTAataaaattgagattaaaa

a score=8511
s chr3           45165204 362 + 160039680 TGGAAACTGAATAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCC--AAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAA------AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAAT
s HiC_scaffold_1 24186828 346 - 233722169 TGGAGACTAAATAACATGTTATTGAATAATCaataaatcacagaagaaatcagggaagaaataaaaagatttctaGAATCAAATTGCAATGGAAGCACAACATATCAAAGCCTGAGGGACATGATGGAAACATTTCTAAGGGGAAATGTCATAGAT-TAAATGCACACGTAAGAAGA-----GAGTAATCTCAAATAAATAACTGAG----------AAAGGTCCTAGAAATAACCTAGAAAGATAAAGAGTAATCCAA----ATCTGAAGGAAGGAATTTacaaagatcagagtggaaagtAATGAAGTTGAGACTAAAAA----ACACAAAGGACCAATGATGCAAAGAGCTGATTACTTGAAAGGAT

a score=18755
s chr3           45165311 1098 + 160039680 AAACCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGGAGACAGCACATACCAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAA------AAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAA--------TTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGA---TCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagac---ccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaaca----cattaaagcaatcatccatcctgaccaagtaggttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccattatataaacaaactcaaagacaaaaaccacatgatcatctcgatagatgcagaaaaatcatttgacaatttccaacacccattcatgataaaagttttggaaagatcaggaatttaaggcccatacctaaacatgataaaagcaatttacagcaaaccagtagccaacatcaaagtaaatggagagaagctggaagcaat
s HiC_scaffold_1 78466903 1069 - 233722169 aatcccacaGGGCACAATAATA-CAATCCTAAAATGAAAGTTTATAGCCATGATAGCAAAcattaaaagaacagaataattcCAAATGAATA-CCCAATAAAGCATCTCAAGGttctagaaatttttttaaaaagactaaattcA-----AAACTGTAAAAGGAAAACATTA--CAAAACCAGTTCCAAAATtcatgaaattgagactaaagaaa---tacaaaggattaataaattaaataaatgattctttgaaatgataagcaaaattaattaaatgttagccaaacatcaaaaaaaaaaaaagaaaaaaa----aatcaatgcaattaaaaataaaataggtgaaaTAACAAA----TCTGCAGAAATTCAGATAACtataagaaacaattttaaaaa-ctatattcaa--AAATTGGTGTATGTAGGATAAATGGAGAAACATAGACATATTTTGACATATTTGATTTATTGAATCTCAAACAAGAGACTTAAACTCA----CTGAACAG----ACAataatcaatgaaatagaaagagtGCTAAAAA----CTGCACCAAGAAAAGCCTTGGACTTGATGGATTTACTGCATAAATCTACCTGAACTTCAAGTAAGATCTAACACTAATAATCTTCAAG-TCttccataaaattataaaaaaaaggaGCTCACAAAACTCATTACTTGAAACTAGCATTAGCATAATACCAAAACCAAGCAAGAACttttcaacaaaaa-ataaaactgtaggcCCATCTTCTGAGTGAACATAG----AAAACTcctcaaaataa-------tagtaaaatgaaaGTAGAAGGTCATTAAAAAAGTCATACTTCATGAGTAAACTAGCTTCAACTCAAGGATGCAAAGACACTTCAACAAATGTAAGT-AATAAACATAGTGCCTTGCATAAACAGAGGGgagaacaaaaaatacatgatcaTCTGAATAAATTCAGACGAA--ATTTAACAGAATCCAAAATTCAATCATGAAAAAAATCCC-TAATGAAAATAGATATGGAAAAAACATCTCAAACTGATCTAAG-AATTTATGACAAATCCCATCCTCACATCATATTGAATGGGATAAAACTGAAAGCAAT

a score=9827
s chr3            45165480 652 + 160039680 AAACTCAGGGGTG----AAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAA-AGGGAGACATAACAACAGATCCTGAAGAAATCCCAAACACCATCAGATCCTTCTACAAAAGGCTATACT------CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCATGATCAAGTTGATCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAG-TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagac-caatttctcttatgaatatcgatgcaaaaaccctcaataaaattctcgctaaccaaatccaagaacacattaaagcaatca
s HiC_scaffold_1 195772441 627 - 233722169 AAACTCGCGAGTACACAAAAT--ACAAgatagaaacaaaagaga--------aaaaccaatgaAAAGCAGAGTTGGTTCTTTGTTGAGAGCAAGGAAGT-GAAATCTCTTTAAGCAGACTAAC---------CATGAAAATAGTC--GAACactaaaatgaaaagtgaaagagTGTGTTATTGGCAC---CCTTGCAAAAGTGAAAAGGTTTATAATATATT---------GGTTATAATGTGTGCCAACAAA-TTAGATCATGTGGATGAAGCTTTAAAATTCCTGGACAGACACAAACTACTGCAAGGGATtcaagtaaaaatagaaaa-ctaga-aGACACATATTAACTAAAAGTACTGAATTAGTGTTTAGAAAACTTCCCATTAAAAAAAGCCCAGACCCATATTGGCTTAGCTGATGAATTCTAGCCAACATTTATAGAAGAATTACTTCAATTCCTTCAAATATTCATGCAAAATATAGAAGAGAAGGAAAGTCTTTCCAGCTTATTATATGAGGTTATTATTATCATGATGCTAACcagacaaaaacatttaaaatgaaaagaaaattatagatatTACATTCCTTGTGAATATAACTGCAAACATCTTCCTCAGAACACTAG-TAAATGATtccataaatgttttaaaaggattA

a score=5530
s chr3           45165851 224 + 160039680 CCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCATTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTactctgatacctaaaccacagaaagacccaacaaagatagagaacttcagaccaatttctcttatgaatatcgatg
s HiC_scaffold_1  1869309 213 - 233722169 CCCAAACATCAACACCACAGACTCAGACAGTTTTATAGACAACTTTTATGAAGGTTTCAAGGAACACAAAAGCCCTGTCTTACACAAACTGTTCCAAAGAATAGTAACAGAAGGAATTCTCCCAACCTCGTTTTATGAGGCTAGGATGACCTCGATTCC-----------AGTACGCCACCACCATGGAAAACCATAGACAGATTTCACTCGTTAGCACAGACG

a score=8802
s chr3            45173928 741 + 160039680 AGGGGAACTCACACTGATTAAAAAAAAATCCCTAGGAATCTAATCTATGTGGGAAAGACTTTTCTCTTGTAGATAATTTTCAAATGTGTTGTCAAACCAATAGTGGAATAAAATTCCATGTGTGCAAGGAATGTGGGAAAACTTTTACTGATCACACTTCCCTTCAATACTATGGAAGCATTCACACTGGAGAGAAAATCCTGTGGTGTAAACTCTACTATAAAGCCTTCCCCACTCACAGCTTTCTTCAACATTATGAAAAATTGATAATGAGGG-----AAAACCTTTACATAGAACAAATCCTTCCCATATGACAAA-----------------ATGATTCACATAGGTT------AGACA-CATGTCTGTAAAGATGATGGGACAGTCTGTTTATCATGACTCTCCCT----GATGTCATGAGAGGTTTTAATTTGGAGAAAAAAAAAACACACTGTATTGATAAGCAGTATGGGAAAGCTAAGCAGTATGGGAAAGCTCTGCCCAAGATAATTACTTCAGCATCATGAAAAAAATTCATAATGGAGAAAAATT-TATATGTGTAAGAAATGTGGAAAAAACTTCACATTATGGAGAGATTTGTAAAAACAT-GGATTGAATAAAACAAAAAGAAACCATTTAACTCCAAGATAGGTGGTAAGCCTTCACCTTTTCCAATAACTATAGAAGCCATTT-------ACAAAAGTGAG---AAACCATATGGTGTCAACAATGTATGAAAACTTTCATTTTTTTCTGGTTCCCTCCACAAATATG
s HiC_scaffold_1 222210800 737 - 233722169 AGAAGGCCTTACATT-----AGAGAGAATCCTTATACAagtacacagcaaaagaaaatttttgtttcttgaaatacCCTCCAAAGCCATAAGAAAATTCATACTGGAGAGGAACCATGTGTATGTAAGCAGTATAGGAAAACCTTCATTCATTCCAGTTCCGTCCAATATCGTGAAATAGTTTACAATGGTGAAAAAACCtatatatgtaaacaatgtggtaATGCCTACACTCATTCCAGGCCCCTTCAAGgccatg--aaattgttcatggtggagagaaaaacatatgtatgtaa---------gcCATGTGAGGAAGCTTTTAGTGTTTCCTCAGTATTCAGTTACATTCTGGAGAGACACCCTATACACAAAAGCATTGGGCAAATGCCTTAGTGGTGACTCAGCTTCAAAGATGTGAAGA--------AACTCAGAGTGGAGAGAAACTCTATGAGT--ATAAACCATGTGAGAAAGTT---TTGTTTGGGAAAG------------TAATT--TTTGGAGACAT-AAAAAAGTTCATAGTGGAGAGAAACCAGATGATTGCAAGCAATGCGG-AAAAGTTTCCTTTCGTAAAGGGGTtttcaaagacataaaaatgtaCATAGTAGAGAGAAATCGTATGAGTTCAACAACATTGGAAAACTTTTGTTGTCTTAGTCAGTTA-ATAAgctatttaaaaaagataaaagtgagaTTAAGCCTGTTTGTGTAAGCAGTGTGCAAACATCTCTAGATTTTCC---ATTTCTCTGCTAATATG

a score=7687
s chr3           45200221 188 + 160039680 TTTTATTCAATTTGATTTGATTTTT----GTGACTCCTAGGCATTAGAAGGCTTTGGCCACAAAGCCAGGCTTCAAGCTAGGATGAACAAAGGACTGCCATCTGCTCGGTCTCTGACTTATAAAAGAGTAAAACCATCAACAAGTTGTCTCTTTGCCCATTACAGAAGGTGGGAGAGATTTTctcatttttt
s HiC_scaffold_1 37912072 184 - 233722169 tcttattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCC-------AGGGgggtctttttgcttttt

a score=31584
s chr3            45690222 668 + 160039680 tcttttcttttTTTAAAGGCACATTTATTCAGCATCATGATCAGACTATTACATTTAGCAATCAACAGCATGGGTGAAAAAAG--GTCTACAGTAAAA-CCTTTTGTTGGAATGCTTTACACTTTCTTCAGAACAGAAACTAAAATAACCTGTTATACAATTAGTCACAAATACAGTCCTGG---AGTTTTTGCCCACACACATAAGTATTGTCTAAAACATGTCTGCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTAGTTTCCCTGTCATTTCTCTGGCTCTCCTCTCCTGCTAAGCTTTGTTTCCTG--------------------------CCATAGCTACTGCTGTTGCTGGAACCTCTATAGCCACCTTGGTTCGGTGGTTTAGCAAAGTTCTGGCCTCCATCACCATAAGAGCCAGAGCGCCTGCCTCCAAAGTTTCCTCCCTTCATCGGTCCAAAATTTGAAGACTGATTGTTGAAATTGCCAAAATCATTGTAGCTTCTAGCACCTCCAAAATTGCTTCCGTTATTGCCAAATCCATTATAGccatccccactgccaccatatctgccaccaccaccacagctgccaccaaagccactacgaccactgaagttaccttctcgaccaaaattgtcattgccaccaaaaccacctcca
s HiC_scaffold_1 133610255 662 - 233722169 TCTTCCCCCTCCATAAAGACACATTTATTCAGTGTCACAATTATACTGTTACATTTACCAATTAACTTCCTTGGTGTAAAAAATAATCTACATTAAAAATCCTTTGTTAGAATACTTTACACTTTCCACAGAATAGAAACTAAAATAACCTGTTACACAGTTATTCACAAATACAGTCCTCAGCAATTTCTTTTGCCCATACTTGAGTATTGTTCATAGCATGTCTATTTTGCAGCGTCTTAGCCC---CACCACTGTGCTTGGCTGAATTCAGAAATCTGTTGTAACCTGAAGCTTCTCTGTTA---CTTTGACTTGCTG----TGCTAAACTTTGTTTCCTGGCAGTAACTAAAATATTCTGTCACTGCCATAGCTTCTGCTGTTGCTGGAACCACTATAACCATCTTGGTTTTATGGTTTGGCAAAGTATTGGCCTGTATCACCATAGAGGCCAGAGGTTCTGCTTTCAATGTTTGCTCTCTTCACAGATCCAAAATTTGAAGATTGATGGTTGTGATTGC------CACTGTAGCATCTA-CTCCTCCAAAATTGCTTCCACTGTTACCAAATCCATTGTAGCTGTCCATGCTGCCACCATA------ATCACCACCAC--TTGTC-------------CTAATGTTGATGTTTCCTTCATAACCAAGGTTGTCATTGCCTCTACAGTCACCATCA

a score=28306
s chr3            45690227 686 + 160039680 tcttttTTTAAAGGCACATTTATTCAGCATCATGATCAGACTATTACATTTAGCAATCAACAGCATGGGTGAAAAAA-GGTCTACAGTAAAACCTTTTGTTGGAATGCTTTACACTTTCTTCAGAACAGAAACTAAAATAACCTGTTATACAATTAGTCACAAATACAGTCCTGGAGTTTTTGCCCACACACATAAGTATTGTCTAAAACATGTCTGCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTAGTTTCCCTGTCATTTCTCTGGCTCTCCTCTCCTGCTAAGCTTTGTTTCCTGCCATA-------------------------GCTACTGCTGTTGCTGGAACCTCTATAGCCACCTTGGTTCGGTGGTTTAGCAAAGTTCTGGCCTCCATCACCATAAGAGCCAGAGCGCCTGCCTCCAAAGTTTCCTCCCTTCATCGGTCCAAAATTTGAAGACTGATTGTTGAAATTGCCAAAATCATTGTAGCTTCTAGCACCTCCAAAATTGCTTCCGTTATTGCCAAATCCATTATAGccatccccactgccaccatatctgccaccaccaccacagctgccaccaaagccactacgaccactgaagttaccttctcgaccaaaattgtcattgccaccaaaaccacctccaggaccaccaccaAAGATCCTGGC
s HiC_scaffold_1 212640308 662 - 233722169 tttttttttaaag--acatttatttagTGTCATGATAAGACTGTTACATGTAGCAATCAACAACACAGGTACGAAAACAGTCTGCATGGAAACCCATTGTTGGAATGCTTTACACTTTC--CAGAGCAGAAACTAAAATAACCTGTTCTGCAGATAGTCATA-------TCGTGAGTGTCCTGTCCATACTCATGAGCCTTGTCTACAACATGTCTTCTT---AGCAGCAAGGCTCTGCCACCACTATGCCTGGTCGAGTTCAGCTGTCTGTTGTAAGCTGTGGCTTCTCTCTCACTTCTCAAGCTCTCTTCT---GCTGAGCTTTGCTGCCAGCAGTATTTAACACCTTCTGCCTCTGCTAACGCTCTTGTTATTGCTGGAGCTACCATTGCCACCTTGATTTCGTGGTTTGGTAAAATATTGGCCTCTGCCAACACAGGGTGCGGAGCTTCTGCCTCCAGATGCTCCTCTCTTCATGAGCTCATAGTGTGAAGGTTGGCTGTGGTAACTGACAAAACCAGTGTAGCTTCCGCCCACTTGAAAATGTCTTCC---ATTACCAATTTCAGTGTAGTGAATCC--CTG----------------------------TGCCATCAAAGGAACCTGGAACACTGCGGTTTCCTCCTCGACCACAACTGACAGAGCCACCAAAACCACCTCGACGACCACCACCAAAATTTCCAGC

a score=39574
s chr3           45690237 672 + 160039680 AAGGCACATTTATTCAGCATCATGATCAGACTATTACATTTAGCAATCAACAGCATGGGTG-AAAAAAGGTCTACAGTAAAACCTTTTGTTGGAATGCTTTACACTTTCTTCAGAACAGAAA-CTAAAATAACCTGTTATACAATTAGTCACAAATACAGTCCTGGAGTTTTTGCCCACACACATAAGTATTGTCTAAAACATGTCTGCTTTGTAGCAGCTAGGCCCTGCCACCACTGTGCTTGGCTGAGTTCACAAATCTGTTGTAACCTGTAGTTTCCCTGTCATTTCTCTGGCTCTCCTCTCCTGCTAAGCTTTGTTTCCTG------------------------CCATAGCTACTGCTGTTGCTGGAACCTCTATAGCCACCTTGGTTCGGTGGTTTAGCAAAGTTCTGGCCTCCATCACCATAAGAGCCAGAGCGCCTGCCTCCAAAGTTTCCTCCCTTCATCGGTCCAAAATTTGAAGACTGATTGTTGAAATTGCCAAAATCATTGTAGCTTCTAGCACCTCCAAAATTGCTTCCGTTATTGCCAAATCCATTATAGccatccccactgccaccatatctgccaccaccaccacagctgccaccaaagccactacgaccactgaagttaccttctcgaccaaaattgtcattgccaccaaaaccacctccaggaccaccaccaAAGATCC
s HiC_scaffold_1 95197953 690 - 233722169 AAAACACATTTATGCAGCTTCATGTTCAGACAATTGCAGTGAGCAATCAATAGTATGGGTGCAAAAAAAGTCTACATTAAAATCCTTTGTTGGAATGCGTAACACTTTCCACAGAACAGAAATCTAAAGTAACCGGTTACACAATGAGTCACAAACACAGGCCTCAAGTTTTT-TGAATGTACACGAGTATTGTTTAAAACACATGTTCTTTGTAGCAGCAAGGCCATGC-ATCACTGTGCTTAACTGAGTTCACAAATGTGTTGTAATCTGTAGCTTCCCTGTCATTTCTCTGGCTCTCCTCTCCTGCCAAGCTCTGTTTCCTGGAAGTATTTAAAACCTTCTGCCACTGACAGTTTTTGCTGCTGCTGGAATCACCATCATCACCTTGATTTCATGGTTTGATAAAGTATTGGCCTCCACCACCGAAGCACCCAGAGCTTCTACCTCCAAAGATTCCTCCTTTCAAGGGTCCAAAATTTGAAGATTGATTGCTATAATTGCC-GGTTCATTGTAGCTTCTACCACCTCCATAATTGCTTCCATAATTACCAAGTCCATTGTAGCCATCCTCACAGTCACTAT-----CCACCTCCACCACAGCTGCCACCAAAGCCACTTTGACCACTGAAGTTTCCTCCACGACCAAAATTGTCATTTCCAGCAAAATAACCTCTATAACCACCAACAAAATTTC

a score=9403
s chr3            45775872 273 + 160039680 TACAGCAACAACAAATACCAGTATTTATTCTGAAAGGATGT---GTGTTTCAACAAGCATATATTAGCAGCTTCCAACTCGGTCTCTAGGAAGGATTCTCAGTTCTGAGCCGTGCTTCAGGAAAAC-GTTCCCAGCAGTCCGTGCAGGATTCATTCCTATTCCATCATTAGTAATAATCGTGCTTGTAGCTGCAGGAACTTTAAATTCTTCTGCTGCAAACTTTA-GCCTGCTGTGAACGGCGTACTTTCAGGAACACTGAGAACTTTGTATGGCAGC
s HiC_scaffold_1 229656460 274 - 233722169 TACAAGAACAAAATTTATGA-TATTTATCTTGAAAAGTTATCATATGTTCTAAGTAACAAACATTAACAACTTCCAACACAGCCTCTAAGAATAACGCACAGCTCTGAATCATGCTCTGGAAAGGCCATTCCCAGCAGTCTGGGCAGGATTTACCCCTGTTTCATCGCAGGTAATAGCTGCACTGGTTGCTGAAGGAGCTTCGCATTGTTTTACTGCAAACTTGATGACTGCCAAGAAAGATGGGCTCTCTGG---ATGGAGTGGTTGGTGTGGCTGC

a score=5570
s chr3           45775975 140 + 160039680 GAGCCGTGCTTCAGGAAAACGTTCCCAGCAGTCCGTGCAGGATTCATTCCTATTCCATCATTAGTAATAATCGTGCTTGTAGCT-GCAGGAACTTTAA----ATTCTTCTGC--TGCAAA-CTTTAGCCTGCTGTGAACGGCGTACTT
s HiC_scaffold_1 52689585 139 - 233722169 GAACCACACTTTAGGAAAGGATTTTTGGCAGCCTGTGCAGGATTCATTTCTATCCCATCATCGGTAATAA---------TGGCTGGCAAGAGCCTTAAGAGGATTCTGCTGCAACGCAAACCTTCAGAGGACTGTGAATGGCAtactt

a score=29679
s chr3            47230484 514 + 160039680 tttttttttttttttAATGGTGAAAAAAAGTATATATTTAGAATTAGCCATCTGGATTCAGTTTAGATGAT------------GGCAATATCTAGGGCATCATAATAAGGAGCCAATCGAACATACACCTTCATCTCTCCTTCGGGCCTT-TCAGGGTATTGACTTTGGCCACATCGATGTCATAGAGTTTCTTGACAGCCTGCTTGATCTGATGCTTGCTGGCCTTGACATCCACAATGAACACAAGAGTGTTGTTGTCCTCTATTTTCTTCATGGCTGACTCAGTGGTCAGTTGGAATTTGATGATAGCATAGTGGTCAAGCTTGTTTCTCCTGGGCGCACTCTTCCAAATATATTTTTCCTGCTTCCAGAGCTGCAGGGTCTTGGGACACCGGAAGGTTGGTGACATTCGAATCTTCTTCTTTTTGTGGCTGTGGACACCT-------------------------TTCAGCACCCCCTTCTTAGCTTTCAAGGCCTTCGCTTTGGCTTCGGCTTTGGGAGGGGCAGGAGCATACTTCTTCACTTTCGG
s HiC_scaffold_1 219522784 548 - 233722169 tcttactttttttttaatgaacaaaaaaa-tgtgtatttggaATTAGCCAGCTGGACTCAGTTCACATGATCCCAATTTTGTTGGCAACACCCAAAGCATCATAATCAGGAGCCGGTGGAACCTACACCTTTTTCTCTCCATCAGGCCTGATTTGGGTGTTGACCTTGGCCATGTCGATGTCGTAGAGCTTCTTCACAGCCTGTTTGATCTGGTGCTTG-TGGCCTTGACATCCACAGTGAACACGAGTGTGTTGCTGTCCTCCATCTTCTTCCTAGCTGACTCCGTGGTCAGGGGGAACTTGATGATGGCATCGTGGTCAAGTTTGTTTCTCCTGGGCG--CTCTTCCGAGGGTATCTGGACTGCCTCCAGAACCGCAGTGTCTGGGGATGGCGGAAGGTGGGTGAATTGCGGATCTTCTTCTGTTTGTGGCTGTGGATGCTTTGAAAGACCATATTATTTGAAAGGCTGAAGCACAGCCTTCTTGGCCTTCAAAGCTTTTGCTCTGGCTTCAGCTTTGAGAGGGGCAGGAGCTTCCTTCTTCACCTTTGG

a score=20412
s chr3           47230506 489 + 160039680 AAAAAAAGTATATATTTAGAATTAGCCATCTGGATTCAGTTTAGATGATGGCAATATCTAGGGCATCATAATAAGGAGCCAATCGAACATACACCTTCATCTCTCCTTCGGGCCTT-TCAGGGTATTGACTTTGGCCACATCGATGTCATAGAGTTTCTTGACAGCCTGCTTGATCTGATGCTTGCTGGCCTTGACATCCACAATGAACACAAGAGTGTTGTTGTCCTCTATTTTCTTCATGGCTGACTCAGTGGTCAGTTGGAATTTGATGATAGCATAGTGGTCAAGCTTGTTTCTCCTGGGCGCACTCTTCCAAATATATTTTTCCTGCTTCCAGAGCTGCAGGGTCTTGGGACACCGGAAGGTTGGTGACATTCGAATCTTCTTCTTTTTGTGGCTGTGGACACCTTTCAGCACCCCCTTCTTAGCTTTCAAG-----GCCTTCGCTTTGGCTTCGGCTTTGGGAGGGGCAGGAGCATACTTCTTCACTTT
s HiC_scaffold_1   825058 449 - 233722169 aaaaaaagtgtgcattTAGAATTAGCCAGCTGGATTCAGTTTTGATGGTCCCAATTTTGCTGGCAGCATG-CAGAGCACCAGTCAAATGCAcgcctcttcctctccctcaggCCTGATCGGGGTGCTGACC--GGCCACGTCGACGTCGCCGGGCTTCTTCGCAGCTTGTTGGAGCTGGTGCTCGCTAGCCCTGACATCCACAATGAACACGCGTGTGCTgttgtcctctgccttcttcacAGCTGACT---------------------------------GGTCAAGCTGGAGTCTCCTGGGGGTGCTCTTGTGAGGGTATTTGGGCTGCTTCTGGAGCCTCAGTGTCTTGGGACAGCAGAAGGTGTGTGACATGCCAATCTCC-----TCTGTGGTTTTGGGGGTCTTTCAG-----CCTTTTTGGCTCCAAAGCTTCTGCTTTGGCTTTGGCTTCAGCTTTGGGAGGGGCAGGAGCTTCCTTCTCTGCCTT

a score=7699
s chr3           47290943 154 + 160039680 tttgatttgatttTTTATAAGTCCAAGGCATAAGACAGCTTTGGACACCAAGCCATGTATCAAGGTGAGAAGAACAAAGGACTGCCATCTGCTCTGCCCCTGTCTGATATAAGTACAACACCATAAACAAGCTTTGTCTTTGCCCATTGCCAGG
s HiC_scaffold_1 37912085 153 - 233722169 ttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGG

a score=10436
s chr3            47460325 244 + 160039680 CAAGCATCCTCATTAGAGTCACATCCTCTTTAAACACTTCATGGCAACCCCTGTTGCATTGCCTTGACGCCTAGGTAAGACAGGGTGAACTGCAAGTCCAACCGCTTCCTTGAGATCATATCACTTTAGGATGATTATTCCAAGTGCTTCCTTATGGGAACTGAAAATGTGGGCTCTAAGCAGACCCTGCAGATCGGGATGTCCTTGAATGTCTCTGA---GAAGGAATGCCATCGTGCTGATGGTC
s HiC_scaffold_1 131054541 246 - 233722169 CAGGCATTCTTGCCAGAGTGACATCACCTTTAAACCCTTTGTGGCAACCCC-GAGGTATTGCTATGATGCCCAAGGAAGACAAGGTGACCTGAAAATCCAACTACTTCCTTAAGACCATCCAGCTTTTAGATGATTACCCAGCATGCTTCATTGTGGGAGCAGACAACATGGGCTCCAAGAAGAGGCAACAGATCTGCATGTCCCTTTGTGGTGCTGATGGGCAAGAATACCATGATGTGCATGGCC

a score=46713
s chr3            48025548 1207 + 160039680 atagcaagattCATGGAAAAGTTGCTT-CTGAAAGGAAACCCCCAAGAAGGTTCAGAAAAGGAATGTAGAAATCAAGAAATTATTACAATTACT--GTAAATTGTAATGCACTACATTTCCCAT--ATCTTCCCAGTAATACAAAACACTCTCCCTTGCAGAACTGGTTCAGATTACTTAAATACCAAGTGCGCTGTCACTCCTCTACACACGTGTCTGGAAGTTACTCGTGTTTCTATGAAATGAAGCTATTGATACTTTTCTACAGCAGTAACTGCACTCCAGGA-AGGCAGAGACAGCACAAACCAAGGGATGGAGTTTCCCCAAAGCTGCAGTGTGAAAAGACTATAAACAGTTGATCCCATACACATGAATGGGCTTCCTTGCTAGAGTAAATCCAAGTGGAATAAAAAACGGAGA--TGTAAAAAGGTTTTCTTAAGGAGAAGGAGGCTGGTGCCCTGGATGCCTTTAGTTTTCGGCCCCCTCTGCTGCATCACATTCTTCTCCTGCACTGTTCGATGTCCATTAATGTTAAGTTGTCTCTAAGCAACTGCATGATGAGGGTGCTGTCTTTGTAGGAGTCTTCGTT-CAGTGTATCAAGCTCTGCGATGGCCTCGTCAAAAGCCATTTTAGCCAGTGTGCA-GGCAAGCTCTGGA-TTATT-AGGATCTCATAGTAAAATACAGAAAAGTTAAGAGCCAACACCAGGTGGATTGGATGCGAAGGCTGCATCTC-TTTCTTGCTTATATCAAAAGCCTTTTGGT-AGGCTCCTTGGGAATTTTTTATTGTTTCTTTTTGATCGTCACCACAAGCTACTTCAGCAAGATATTGGAAATAATCTCCCTTTATTTTCAGATAGAAGACCTTATTCTCGGGATTAGTTGCACTGGCTATTAAATACTTATCCAACAATTCCAGGCCCATGGTGCAGATGGACCTCAGCTCCGACTCCACTTTCTCCCAATAGTCCTTGATCAGCTGCAACTTCTTGTCGGAGGTGTCGGTCTTCTGCTCAATGTTCAAGATGACCCTCCAGGAGGACCTACCCCCCCCCCACACACCCCGTCCACGTTCTTGTAGGCCACCGAAAGCAGGTTATGCAACTCTTTGGACAGCTCCGTGCCCTGCTCAGTCATGGCTTTCATGTTGGTGGCCATGTCGTCTTAGTGCTCGGCATGCTC-CCCAGCTTGGCCTTCTGGATCAGCTCGGTCTTCT
s HiC_scaffold_1 227409248 1158 - 233722169 ACAGCAAGAGG-GTGAGAAAGTTGCTTACTGAAAGGAAACcccaaagaagagaaagggaagtgATACAGAAATTAAGAATTTCTGCAGAATGCTCTTTAAATTGCAATTATCTACAATGTCATTGAATCTCCACAGTAATACAAAACACAGTCACTT-CAGAACTGGTTCACATTACTTAAATGCCAGGTACATTTTTAGTCCTCTATGTAAGTGT-TGAAAGTTATTTACATTTATATGGGATGAAGCTATTAATACTTTTCTGCAGCAGGAACTGCACATCAGGATAGCCAAAGCAAATACAAATGAAGGAATACAGCATTCTCAAAGCTGCAGTGTGAAAGGACTAAGGGAGTTCACTTTCATACACATGAATGAGC-TCTTTGCTATAGAAAGTCTGAGTGGAGTAAGGAATGGAGATGTGTAAAAAGGTTCTTGTTGGGAGAA--ATCCTGAAATCTTGTGTGCACTTATTTCTAAG-CCCTTCTGCAGCATCATGTCTTTCTCCTGCACTGTCTTAATTCC-CTAATATTAAGTTGTCTCTGAGCAGCTGCATGATGCGAGTGCTGTTTTTGTAGGAGTGTTCCTTACAGTATATGAAGCTCTGAAATAGTTCTGCCA------TTTTTAGTCAGGGTGCATGGCAAGTTTGGGGTTTATTAAGGATCTCATAGT-AAATGCAG-AATGCCAAGGACAAAC-CCAGGCAAGATTGATGTGTGGGTTGCATCCCTTTTCTTGC--ATATTTAATGCTTCTTTGTAAAGTTCCTTGGgaa----ttattaacttttttctaTTATCACCATATGCAACATCAGCAAGGTCTTGCAAgtaatctctcttccttttcagaTAGAAGAATTTACTCTCTGAAGTAGTTACATTGTCCATTAAATAGTTGTCCAACAATTCCATGGCAGTAATGCAGATGG---------------------------GGTACTCCTTAATTG---ACAGCTTCTTGTTGGAGGTGTCAGTTTTCCACTCAATGCTAGATATGACTCTCCAGG----CTTACCAGCAGCCCA-------TGACCAAATTTCTGTAGGCCATAAAGGGCAGGCTACACTCCCCATTGGACAGCTTGGCAGCCTGCCTTGTCACTGCCTTCCTGTgattgaccataccttcacagcACTTGGCCTGATTGACCAGCTTGGCCTTCTGGATCAGCTCAGTTTCCT

a score=5950
s chr3           48146093 139 + 160039680 TTATGCATCCTTGTTATAAGGCAACTTTGGTCACCATGGCATGCATCAAAC-----ATGACAAAGGACTGCCATTTGTTCTGTCCCTGACTGATTTAAGAAAATAACCACCAATAAGGTGACTCTTAGCCCAATTTGGGGAGAG
s HiC_scaffold_1 37912099 143 - 233722169 tcatgtgTCCTAAACATGAAACAGCTCTGGCCACCA-AACAGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGggg

a score=8070
s chr3            49491765 187 + 160039680 TAAAGGCATGGAGGAGATGTGTAAGAAAGCTCATGCTTCTATCCGAGAGAATCCAGTCTATGAGAAGAAGCCCAAGAGAGAAGTGAAGAAGAAGAGGTGGAATCGTCCCAATATATCTCTTGCCCAGAAGAAAGACTTGCTCAAAAGAAGGCAAG-TTCCTCAGAGCTCAGGAAAGGGCTGCTGAAAG
s HiC_scaffold_1 138837810 186 - 233722169 TAGAGGTATGGAGGGGATGTAGAAGAACACTCACACTGCTGTAAGAGAAAATCCAATCTATGTGGA-aagcccaagagagaagttaACAAGAAGA-GTGGAACTCTCTTAAAATGCCCCCAACCCAGAAGATCAGGAAGCACAAAAGCAGGCAAGCTTTATGGGAGCTCAGGCGCAGGCTGCTGAGGG

a score=19578
s chr3           49530721 640 + 160039680 TGTCAGGAC-------AGCTCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGCCCAGGGCATT---------CATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGC-TGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAAGTGGAAAAAAAATCAGGATAG
s HiC_scaffold_1 49959664 605 - 233722169 TGTCAGGATGGGAAATAGCTCCTCCTGTAAGCAACCTGAACTGATCTGTCAAAATGCCTCACTACTTACTTAATGCACAAACCCCCACAACATCATGGAAATCAAGAGGTCCAAATTCTCTTGATGA-GTATAAAATAATTATGACACGGCCCAGAGCATCAAAGATGTGCATATCTGAAAAACCACCAAGTAGCTGAAAGAtgtcattttaaagaaacaatggcTGCCACT-GGGTGTTGCAATGATGGAGTCAGTTGGTGTGCCTGGGTCAAACAAT-GCTCAGGTCACAGGACTGATGACCATAAAAAATTGCAAGAATTTTGGTTACATATAGTTTAAAATGC--ACAGTAATTCTGA--------GTTTAAACATAGATTATCTGCTCGGTGAATATTTCCAGGTGAACAAGTTACCCTTGATGTGCC--------------ACTCATGGTCAGATTAGCCCTTATACAAGCACCC-TTGTTACATGGTGATGATCCTCACCAAAATAGAATGagctatttttaaacaaaaagaggAAGTTGCACAAAAGG-------------------ACTGTAGGAATAA-----TAATACATGGAAATAAATTCAGTATAAATGACatgcaaataaaagtaaaaaagattggGGATAG

a score=22762
s chr3           49530724 626 + 160039680 CAGGACAGCTCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGCCCAGGGCA-------TTCATAC-CCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCC--GCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAAGTGGAAAAAA
s HiC_scaffold_1 85108649 615 - 233722169 CAGGGAGGCTCTTCCGGTCAGGGGTCCGGA-TGACCTGTGAAAATGGCTCGCTACCCTCTTGATCCAGAGAACGCCCCCAAATCATGCAAATCGAGAGGTTCAAATCTTTGTGTTCACTTTAAGAACACCCGTGAGACAGCTCAGGCCAGCAAGGGTGTGCACGTCTAGAAGTCCCCAGGTGTCTGAAGGGTGTCACATTAGAGAAGCAGTGTGTGCCTCTCCCACACTGCAGT-GTGGAGTGGGTAGCAGCGCTCAGGCCCAGTGGCGGGGTTGGGCACAGGCACGGGGCCCAAATGGT---GCCGACTTC----------TGCTT-AAAATGCAGAGAGGGAGGCTGAACCGCAGAG-TTAAATGTGGGCTCTCTGGCCACTGGATGGACCCAGGTGAACGAAGCACCCAAGATGCCCTGA-GTACTTCCAGAGCACAGGGCTGGGTTCACCCATG-GTGAGCTCCTCAGCCCCCACAGCAAGGTGGTCTTTACTGA-AGGGAATGCCTGGTTCCTAACCTGGAAGAGGAAGTTGTGCAGAAGGAGAAGGTATCCTAGGAGAAGCTACAGAAACAGA-ACTTACAGCATGAGAATAGACTAAGTATAAACCAAAtgcaaataaagtttaaaaaa

a score=18120
s chr3           49530726 600 + 160039680 GGACAGCTCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGCCCAGGGCATTCATA-CCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGA-TCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAA
s HiC_scaffold_1 45895137 580 - 233722169 GAATATCTATTCTTACAATTGGCCTGAGGTGAACCA-AAAAATTGTTCACTACTCTCTTAACCCAAGAAATCCCACAAATCCATGCCATTCAAGAGGTTCAAATGTGCATGTTCATGTTAAGAACA-CTGTGACACTGCCAAGGCCACCAAGAGTAAGCATAGCCAAAAAGTATCAGAAAGATCTCACCCTAATGAAGCAATATATGCAACTCCAGTGTCACTGTAGCAGAGGTGGCC--TGTCCCCAGGCCAAACAGAGGCACTGGACTCAGTGTTGGTAGCCAAAAAG-AGGACTGGGTTTCTGCTGCACAAGCTTGAAAATGC--AGAGTAGTGTTGGGCTTGTGGGTACAACTG-AGACTCTCCAGTCACTGCGCACA-CAAGATTCACAAAGC--CCCATAAGGGCCACAGCACGTGCTGAGCTCAGGCTTGGGTTAACCCACACATGTGCAC-----ACTGCAAAGAGAGGATCTTTGTGGAAAAGGCACAGATTTTTTCCCAAGCCAAAAGAGATGGCTACACAGAAGGAAAAGATGTTCCAGAAGGGG-TGAAAAAAA-----cctataaaacagaaattaattcTGCATAAAA

a score=21062
s chr3            49530731 622 + 160039680 GCTCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACAT---------------------------------------CCAGGGAACTGCCCAGGGCAT-----TCATACCCTCAAAACTACCAAGTATCTGAAG-----GATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGG-TTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAAGTGGAAAAAAAAT
s HiC_scaffold_1 139193029 639 - 233722169 GCTCTTCCTGTCACCTGCTGAAAGTGGCCTGTGGAAAA----TGCTATTCTCTAGAACT--------TCACAGAATTATACAAATCATGAGATTCAAACTTTTATGATCACTTTAAGAGAATGAGAGGagtggggaagggaaaggagagaaggtggAGGGGAAGGGAAACTCCCTAGGCCAAAAAGAGCATATTGGCAAAGTTGC-AAGtatctgaaatataaaatatcactttAAAGAAGTAACGTATGGCATTC-AGCATTAGAACAGTGGAAGAGGGAAGTGTGCCCAGGCCAAACAGTTGACCTGGACACAGAGTCAATGGCCCCAAAACAGTGCTGGA-CTTTGCAACATGTACCTAAAGATGCAGAGCATAATGCTGAACTTTAGAATTTTAGATGGAGATTCTGCATTCATTGAGCACATCCAGGTGAACAAAGCACCTGA-ATGCACTGCTGACCTTGC----CCTGTAGCCTGATTATTGCATGCATGAACCC---TTCAAACACCGGCATGACCCTTAATTAAAAGGGGCAAACTGTTCCTAAATT-GAAGAGATAGTTGTACATAAG--AAAGATGTCtcagaagaaactgaagaaataaaaatttat-----gggaataaattcagcataaaataagtgcaagcaaa--agaaaaaagat

a score=25394
s chr3            49530731 609 + 160039680 GCTCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCC---------------------------------------------------------------------------------------------------------------------------AGGGAACTGCCCAGGGCATT---------CATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGA-------------------------------------------------------------------------------------------------------------------------GCCATTCCGGCAGTATAATGGTAGAGTCGGTAGG--TGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAA
s HiC_scaffold_1 233280286 853 - 233722169 GCTCTTCCTGTAAGTGGCTTGAAATGACCTGTGAAAATGGTTTGCTGCTCTGTTGACCCAGAA----------AATCATGCAAATCAAGAGGCTCAAATCTCTGTGCTCACTTTAAGAACACCCCTgaagaggctgaggatttagctcagcagcataagcacctgcctggcaagagctagGTCGTGAATTAGATcctcaatccttggtacaaaaaaaaaaaaaaaaaagatttaaaaaagaacaccCATGAAACCGCCCAAGCCATTGAGGGTGCACACATCTAAAAGGCCGTCATGTATCTGAAGGATGtcacattaaagaagaaatgtgcagtgctagggatttagctcagtggcataagtgcctgcctctgtcctgcaagcatgaggttgtgagttcatcccCCATAccaccaaaagagagagagagagagaatgagagaagcACTGTGTGCCATTCCAGCATTACAATGCTGGAGTTAGTAGGGATGTGCCCAGGCCAAACAGTGGTGCTGGACCAAGGGTCAATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTACTGCTGAACTGAAGGGTTTAGATGTACATTCTGTGGCCATTGAACATACCCAGGTGAACAGAACACCCATGGCAAGTCACCATATTTACAGAGCTCATGGCTGGATTTACCCATACATGAGCTCTGCCTGCCACAGTGAGGGGATCCTTACTGAAAAGG-ACAAATTGTACCTAAACCAGAAGATGAAgttgcacaaaagaaaaagatacctcagaagaaactgaaaaaacaaaaacttatggCACAGGAATAAATCaagcataaaataaatgcaaataaa

a score=27862
s chr3           49530732 608 + 160039680 CTCTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGCCCAGGGCATT---------CATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCA------------------------------------------------------------------------------------------------------------ACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGA--ACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAA
s HiC_scaffold_1 49617612 697 - 233722169 ctcttcctgtaaGAGGCCTGAGGTGACTTGTGAAAATGGTTCATTACTCTCTTAACCCAGAA----------AATCATGCAAATCAGGAGGCTCAAAtctttgtgtatattttaagAATACCCAGG-AATTGCCCAGGGCATCAAGGGTATGTATACCTAAAAGGCCACCAAGTACCTGAAGGATGGCACATTAAAAAAGCAGTGTGGGGCCAGGAACttacctcagtggcataggtgcctgcctggcaagcacaaggttgtaagtttgatccctggtacaaaaaaaaaaaaaaaaaaatcaaaaaaccaatGTGTGCCATTCTGGCATGACAATGATGGAGTTGGTAGGTGTGCCCAAGGCAAACAGT-----TGGGCACAGGGTCAGTGGCCCACAA--AGCACTGAATTTT-GCTGCACATGTTTAAAAATGCAGAGAGTAATGCTAAACTGAAGGGTTTAGATGTAGATTCTCTTGTCATTGAACACACCCAGGTGAACAAAGCATCCGAGGTGCGCTACTGGGC--ACCGAGCTCTTGGCCAGATTAACATGTGTATGAGCTCCCCCTGCCATGTTGTGATGATGCTTACTAAAAAGGACTATAAACTGTTCCTAAACCAGAGGAGAAAGTtgcacagaagaaaaagatatcccagaagaaacaaaaa---------cttacGGCATGGGAATAAGTTAATCATAAAAAAAATGCAACTAAA

a score=34795
s chr3           49530734 624 + 160039680 CTTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAG----AACATCCAGGGAACTGCCCAGGGCATTCATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTAT-AATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAAG--TGGAAAAAAAATCAGGA
s HiC_scaffold_1 23840265 626 - 233722169 CCTACTGTAAGCAGCGTGAGGTTACCTATGGGAATGGTTTGCTA--CTCTTGCCGCAGAAAATCCCCCAACATCATGCAAATCAAGAGGCTCAAATCTTCATGTTCATCTTCATGTTTAATACCCAGG---CCATCAAGGGTATGCATATCTGAAAGGCCACCAAGTACCTGAAGGAAGTCCCATTAAAGAAGCACTGTGTGCCATTCTGGCGTTGCCAATGGTGGAGATGGTAGGTGTGCCCAGGCTAAACAGTGGGGCTGGACACAGGGTTGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAAAGAGTAATGCTGAACTTCAAGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGTACTGCTGTATTTACAGAGCTCATGGCCAGAATAACCCATACATGAGCTCCCCCTGCCACACTGAGATGATCCTTACTGAAAAGGAATCAATTGTTCTTAAACCAGAGGAGGAAGTAGCACAGAATAAAAAGATATCccagaagaaactaaagaaacaaaacattatagCATGGGAATAAattaagcataaaataaatgaaaataaaagttaaaaaaaaactcaaaa

a score=15991
s chr3            49530735 616 + 160039680 TTCCTTTAAACTGCCAGAACTGACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGCCCAG----------GGCATTCATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAG-TTGTAGATTCTCTAGTCATTGAACACAT----CCAGGTGAACAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCACAAAATAAATGCAGATAAAGTGGAAAAAAA
s HiC_scaffold_1 216353090 536 - 233722169 TTGTTGTAAATGGCCTGACGTGATCTGTGAAAGTGGTTCTCTATTAATTTGGCTTAGAAAACCCCACAAAAGCATGCAAATCTAG--------ATCTTTTTGTTCACTTTAGGAATCTCCATGAAACTGCCTGGATATGATAAAAGTATGGGTATCAACCAACTCACCAAGTATCTGAAAAGTGTCACATTACAGTAA----------CATTCTG------TAA----------------TGTGCCCAGACCAAACTGTGGGGTTGGGCACAGAGTTGGTGGCCCAA--------------------TACA-GTGCTTACAGA--CACACAGTAAACTTGAACTTAAGAGTTTAGCTCTTAAGTTTTGCAGTCACTGAACATACTGTACCAGGTGAATGA-ACTCCTAAGATGAGCTGGTGGGCA-ACAGAGCTCATGGTAAGATTAA--------------------ATCACATGGAGATGGTCCTtgctacagaaaaacaaatggttcttaacacagaagaggaaactgcacaaaggaaaaaaaaatccctgaag----------aACAAAGACTTATGGTACAGGAACAAATTCAGtgcaaaataaatgtacataaaagggggaagga

a score=8133
s chr3           49530756 238 + 160039680 GACCTGTCAAAATGGTTTGCTAGTCTCTTGACCTAGAACCCCTCACAAAACCATGCAAATCAAGAAGTTCAAACTTTCATGTTCACTTTTAGAACATCCAGGGAACTGC---------CCAGGGCATTCATACCCTCAAAACTACCAAGTATCTGAAGGATGTCATTTTAAAGAAGCAACGTGAGCCATTCCGGCAGTATAATGGTAGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGAC
s HiC_scaffold_1 46850649 244 - 233722169 gacct-tgAAAATGTTTCATTATTCTCTTGACCTCCCAAACATGACAAAATTACACAAATCAAGAGGTTCAAATCTTTGCAGTCACTTTGGGAATGCCCA-GAAACTGCCAAGTCCATCAAGGGGATGCATATCTAAAAAGCCACCAAGTATTGGGAAGATGTTACCTAGAAGAAGCCATatgtgccacttgggtgtttcaATAGTGGGCTTGGGAGTGGCA-CCAGGCCAAAGAATGGGGCTGGGC

a score=13952
s chr3            49530930 408 + 160039680 AGCCATTCCGGCAGTATAATGGT-AGAGTCGGTAGGTGCGCCCGGGGCAAACAGTGGGGTTGGACACAGGGACGGTGGCCAAAAGGCAGAGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTAACGCTGAACTTAAGGGTTTAGTTGTAGATTCTCTAGTCATTGAACACATCCAGGTGAA----CAAGGCATCTAAGATGCGCTGACAAACCTACAGAACTCATGGCCGGATTAACCCATTCATGAGCTCCCGCTGCCACATTGAGATGATGCTCATTGAGAAGGAACAGATCGTTCCAAAGCCAGAAGAGAGGGTTGCATAGAAGGAAAAGATATCCCAGAAGAAACTGAAAAAAAAAACCCTCATTGCACGGGAATAAATTCAGCA--CAAAATAAATGCAGATA
s HiC_scaffold_1 134583666 381 - 233722169 AGTCACTCCAGTGTTAAAATGCTGAGTGGGGAGAGATCTATCTATGCCAAACAG--ATGTTAGACACAAGGTCAGTGACCCAAAAAGAGTGCTGA--TTTCTCTG---ATACTTAAAAATGCAGAG--TAACACTGAATTT--GAGTTTAGATGTCAATTCTGTAGTCCCTGAATATATCCAGGTGAATGAACAAAACCTCCAAGATGCTC----------ACTATACTCAGAGTCAGATGAAGCCATAAATGAGCTCCC--TGCCACACTGAGATGATACTTACTGAAACGGAACACACTGTTCCAAAACCAGAAGAGGAAGTTGCACAGCAGAAAAAAGtatcacagaagaaaatgaataaaaa-----------cattagacTAAGTTtagcattttatatatatgtatata

a score=18199
s chr3            49603558 277 + 160039680 tCCCCCCTTTGAAGGAGGGACTTTTAAACTTGAACTATTCCTTCCAGAAGAATACCCAATGGCAGCATCTAAAGTACGTTTCATAACCAAAATTTATCATCCTAATGTAGACAAGTATGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCAATCCAGGCTTTGTTAAGTGCTCCTACACCAGATGATCCATTAGCAAATGATGTATCCTAGCAATGGAAGAccaatgaagcccaagcc
s HiC_scaffold_1 220588060 274 - 233722169 TTCCCCCTGTAAAGGAAGTACTTTTACATCTGAACTGTTTCTGCCAGAA---CACCCAATGGCAGCACCTAAAGTACATTTCATGACCAAAATTTATCATCCTAACCTAGGCAAGTTGGGAAGAATATGTTTagatattttgaaaggaaaatggtTGCCAGCACTGCAGATCCGCACAGTTCTGCTATCTACCCAGGCATTGTTAAGTGCTCGTAATTCAGATGGCCTATTAGCAAATGACGTAGTGGAGCTGTGGAAGACCAACAAAGTCCAAGCC

a score=4721
s chr3            49603591 196 + 160039680 ACTATTCCTTCCAGAAGAATACCCAATGGCAGCATCTAAAGTACGTTTCATAACCAAAATTTATCATCCTAATGTAGACAAGTATGGAAGAATATGTTTAGATATTTTGAAAGATAAGTGGTCCCCAGCACTGCAGATCCGCACAGTTCTGCTATCAATCCAGGCTTTGTTAAGTGCTCCTACACCAGATGATCCA
s HiC_scaffold_1 233677502 193 - 233722169 ACTATGTTTTCTGACAGACTATCCTTTTA-AACACCAAAGACTGCTTTCACAGCAAAAATTTACCATCCAAATATAAATAGTAACAGAAGTATTTGTCTTGATATCCTGAGGTCACAGTGGTCACCAGCTTTGACTATC--AAAAGTTTTACTGTCCATATGTTCTCTACTTTGTGATCCTAACCCAGAGGACCCA

a score=5024
s chr3           49643721 72 + 160039680 GCTGCTCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCCAAACCATCTTCATATTTATCAG
s HiC_scaffold_1 46824662 72 - 233722169 GCGGCCTTTCCTGGGTGCCTCCTGGGTCGTGTATGGGACCAACTATCGCAAAGCCATCTTCATCTTCATCAG

a score=18985
s chr3           49643789  822 + 160039680 TCAGCAGTTCTGGCGGTGAGCAAATCAACCAGGTGGCCCTGGAGGCCTGGCGCAGCCTCGGGGACAGGGAAGATATCAGCCTACAGGAGGTGGAGCCAGTAATCTCCCGAGCTGTGATGGATAACCCTCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCTTCTGGCGGTCTGGCATCATGGAGGAGCACCTGCTGGATGCTGTGGTGCCCTTCCTCCCACTCCGGCAGCATCACGTGTGCCACTGTGTACTCAA-------------------------------------GTGGTTCAGGCTGTGCTGGACAGTACCACCTACTTCCCTGAGGTAGAACAGCTCTTCTCCTCCAATAGCTGCAAGACAGTGGCCTCCCGACTCACATTTTTCCTCTGAGAAACCCAGGTTGCATCACTGCCTCCTCTGCCTAGACAGAG-CAAACACGAAAGGCCT-GGGCGGCTCTTGGAAGAATTCTTTCCTAAGCTGATTGGCAAGTGGGACCCAGAGCACAACGCTAAG----ATGAAGAAAGGTCTAGAAGCAC--------------------------------CTTTGCT----------AAGAAATTCCTGGGTAACCCAGAACCTCACAGCTGTGCCACTGCCCTGCAGTCTGAGCCTGAGCCTTCTCAATGTGAACTGCATGCAACACAGGGATGAAGGATTGTGAGTGCT---TCCAGCTGGGGACTCTTACTGGCACGCTTGTGTGGCTCCTTTCCCAGATCTCAGCCCA-----CAGCCTCTGGCT--GGATCTGGCAATCCAGCTAGGCCAGGCTAGCCCCTCACAGTTTCACCAAATGGAAGG--ACTCAAG-TACTACATGGGCCTGAATTTCAAAGTTTTTAATTTTGTACAAGAGACCAGAGATAATCAACTTAGCCATGGTATTAGAAAAA
s HiC_scaffold_1 46825324 1104 - 233722169 TTAGCAACACTGGTGGCGAGCAGATCAACCAGGTGGCCTTGGAGGCATGGCGCAGCCGCCGGGACCGAGAGGAGATCGAACTGCAGGAGCTGGAGCCCATCATCTCCCGGGCCGTGCTGGACAACCCACACCGTGAGTTGGCTTTGTACCCAGATGGCATGTGCCAGCCTCCTCGGGTGTGCCTGGTCCCCAGGAATAGAAAGTTTGCAGCCCTGTGACCTGGGAGTCATAGGAGCCCCCTCTGTCTGAGCTCAGAGGGTGGCCAAGAGCAGTGAGGCCAGTATCACAGCTGCACCGCGCCCCCAGTGGCTGGCCTCTCCCCACTTGTGTGAGCTTGTGAAGCACAGCATCCCCTCCTGCCCTTCTGCAGATGGCTTCTGGCACTCAGGCATCATGGAGGAGCATCTGCTGGACGCTGTGGTCCCCTTCCTCCCACTGCAGCGACACCATGTGCGACACTGCGTGCTCAACGAGCTGGCCCACCTGGGGCTGGAGCCCCAAGATGAGGTGGTCCAAGCTGTGCTGGACAGCACCACCTTCTTCCCTGAGGAGGAACAACTCTTCTCCTCCAATGGCTGCAAGACCGTGGCCTCCCGGATTGCTCTCTTCCTCT--GACATTGGGCTGGCATCCTCGCCACCCCTACCTGGCTAGGGCCACACAGGAAAGGCCTAGGACCTCTGCTGAAGGACCCTTGTCCCAAGCATGCTGA-GAGTGGGACCCAGAATCCAAGAAGAGGGGCCAAGGACAAAGGGCCAGCAGGGCCCAGCCTCTGAGCAAGTGAGCGGGTACGTGATCTTGGCTACCTCCTCCAAGGAGACCCTTGGTTACCCCACGACCTCACCATT-TGACCTCGCCCTGCAGCCTGGGTCTG------CTTCATGTGAAT----TATAACTCAGGGACCAGAGTTCAGGGCCGCTCCCTCCATCCTGGCTCTCTTACCCGAGCCCTT---TGCCCCGGTATCAAACCCTCAACCTACCCCTCACCCTCTGTCCCAGGATC----------------ACAGGCTATGC-----------------ATGGAGGTACACCCAAGCTGCCACCTGGGCCTGGatttagacattttaaattt--tataagtgAACGAGTGTAATAAAC--AGCCACGGGACTGCAGGAA

a score=3541
s chr3           49901972 89 + 160039680 GACAGAAAAGGTGCAGAAAGAG---------AATGCCCCTTTCAGAGACATGATCCCAGCAACTTAGCCTCCTGCCTCTAGGCCCCATCACTTACTAA
s HiC_scaffold_1 20414804 98 - 233722169 gagaaagaaagagaggaaggggctggatCTCAATGTCCCTTTCAAAGACATGTCTCTAATGACTTAACTTCCTCCCTGTAGGCCTTAGCATTTCCTGA

a score=3770
s chr3           50017126 127 + 160039680 AAGAAAAAACAAACTATAGGCATGAAAAACTTAGGATAGAAATTACTACACTGTATTTCTAGTCTCCATAATAGTGACTTAGTTGGTGACAGAACACACATATGATGAGGGTCCCATGAAATATAAT
s HiC_scaffold_1 97607296 120 - 233722169 aggaagaaagaaaatct-gaCAT---ATGCCTACAATGGAA--CAATAAACTATAATTAT-GCATTCATAATGATATTTCAGTCAGTAATGGAACACATATATGATGGTGGTCCCATGAATTATAAT

a score=29802
s chr3            50250319 609 + 160039680 GGTAGAGGACCTTTTTTTTGAATTTTTTGCAAAATGTTTATTCTATTA-ATTCACTACATTCCTAAGATGTTAACACTTCAAAAGTTTATCATTTC-------------------TAAGTAAACCAGAATAAACACTTTTATCATAGATGTGGCTAATGATTATTAATACTTTTTAAAGGACCTAAAGTTCTCCCAAATTTTAGTACAGGTAGTTTTATTGGATGTTTCATCTAGCAGATATTTTTTTTTAA-AGTATGTAGAAA-GAATTGTTTCCAACTAAGTAAATATATTGTACCATGTTATCAATCTGCCAAATCAAAAGCACTCGGCAAGCTGAATAATAAGTTACAAAGAAATAATAATTCTGGGTTACACAGAT-TATGCAGTATTTTCAAAGCTCTTTAAGAATTACCCACTAACACAAATCTCTTAAC----------AGTTGGGAGCTAAGTTTCACAGGAATGTGATTTTAACTTCCATTAATATTCAGTTTACTATATGACTACTATGTTTAT-------GTCACAATGGTGCTTTCCAGTGTTTACATTTTACAGTTTCAATTTGTACATACATAACTCACTAATATAAGGGACAGTTCTTACTATTGTAAATTATCCCTAAGAAGAAAAATAAA
s HiC_scaffold_1 212996284 629 - 233722169 GgtaatgttctttttgttttcgATTTTTGCAAAAAGTTTATTCTCTTATAGCCAATGCATTCACAAggtgttaacattttaaatgtttattatttcctCTAACTGCAGCATTATTTAAGTAAACCAAAAT---CACTTTTATCATAGATGTAGCCAaaaattattaattcttttttaaaggcCTAAA---CTCCAAAATTTCAGCACAGGTAGTTTTATTG----TTTCATCTagtagatgatttttaaaaatagtgtgtaGAAATGAATGGTTTCAAACTATGTAAATATCTTATGCCATGGTATCAATCCACCAAACCATAAACAATGGCCAAGCTGAGTAAT----TACAAA----TAACAATTCTGGCTTGAACAGAAATGTGCAGTGTTTTCAAAGCT--TTAACAGTTAGCCACTAATGGAAATCTCCAAAGCTGAAACTAGAATTGGAAGATGAGTTTCACAGTAATGTAATTTTAACCTCCTTTTACATTCACTTTGATATATTACTAAGATGTTTATATTCTATGTCACAATGGTGCTTTCCAGTGTTCACAATTTACAATTTCAATTTGTACATATGTGAGTCACTAACAAAAGGCACAGCTCTTACTGTTACAAACCATCcctaatagaaaaaataaa

a score=32941
s chr3            50369870  899 + 160039680 TCTCTCTCTCACCCTCACCCTCTAAGCAATTGATATCATGCGTGAGTGCATCTCCATCCATGTTGTCCAGGCTGGTGTCCAGATCAGCAATGCCTACTGGAAGCTCTACTGCCTGGTACATGGCATCCAGCCTGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAAATGACTCCTTCAACACCTTCTTCAGTGAGACAGGAGATGACAAGCATGTGCGTCAGGCAGTGTTCATAGACCTGGAACCCACAGTCATCAATGA--------------------------------------------------------------------------------------------------------------------------------------------AGTTCT------------CACTGACACC-----------------------------------------------------------------------------------------------------------------------------------------------------TACTGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAGGATGCTGCCAATAACTATGCCCGTGGCCGCTACACCACTGGCAAGGAGGTCATTGACCTTGTCCTGGACAGGATTCATAAGCTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGACCAGTGCACGGATCTCCAGGGCTTCTTGGTTTTCCACAGCTTTGGTGGGGGAACTGGCTCTGTCTTCACCTCCCTGCTGATGGAGTGTCTCTCCGTTGATTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCTCGTATCCACTTCCCTCTGGCCACTTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTGAGCCAGCCAACCAGATGGTGAAATATGACCCTTGCCATGGTAAATACATGGCTTGCTGCCTGCTGTACCGTGGTTATGTGGGTCCCAAATA-GTCAATGCTGCCATTGCCACCATCAAGACCAAGCACAGCATCCAGTTTATAGATTGGTGCCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACTTGGTGGTGACCTGGCCAATGCCCAG
s HiC_scaffold_1 232945766 1687 - 233722169 TCCCTCTCTGTCCCTCA----------------------GCGTGAATGCATCTCAGTCCATGTGGGGCAGGCAGGTGTCCAGATGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGAACATGGGATCCAACCTGATGGGCAGATGCCCAGTGACAAGACCATCGGTGGAGGAGATGACTCCTTCACAACCTTCTTCTGTGAAACTGGTGCTGGAAAACATGTGCCCCGGGCAGTTTTTGTGGATCTGGAACCCACTGTAATTGGTAAGCAGACGAGGGCGCAAATTTGAGGGAGGTGGATAGTCTGAGGAGAGGGTATCTAGTCttggcttcctggctctgaaaAACTCCCAGCCCTAACTGAAGATAAAGCAGGGGAGCTGATCGCAGCCTGGCATGGACCACAGCAGGTCTGGGTTTCTCCCACACTGATATCTTGGGTTGGCAGAAGGATGAGCTAGCTCTTCCATCTGTCTGGCAGCAGATATCACACTGGAGGGAGGAAGGCCCCAGCTGAGCATAGCCTTGTggttttagctcagtagtgtgGTTTATGCCCTTCCAGATGAGATCCGAAATGGGCCATATCGACAGCTCTTCCACCCAGAGCAGCTCATCACTGGGAAAGAAGATGCTGCGAACAACTATGCCCGGGGCCACTACACCATTGGCAAGGAGATCATTGACCCTGTGCTGGACCGGATCCGAAAACTGGTAAGAATTGGCATGGAAGGAAAGGAACATCTGTGACTAAGCAAATGGGTAGGAAAAAGCTTTTTTCAGATCCGTATCAGGAGGTCATCTCTAGCTATATGTTCTAGAATGCGATGCCACTGTGAGTCTCTCATTAGTCCCTAACTTTCAAGATATTTGAGAGTTCATGGAGCTAGAAAAGTTCCTCAGCTCCCCCCACTTGCCTCCCCACCTTCCACCCTTGTGACatggctctttctttttctctactttcaGTCTGACCAGTGCACAGGACTTCAGGGCTTCCTGGTATTCCACAGCTTTGGAGGGGGCACCGGCTCTGGCTTCACCTCCCTCCTGATGGAGCGGCTCTCCGTTGACTATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCTCCCcaggtgtccacagctgtggtcGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCAGACTGTGCCTTCATGGTGGACAATGAAGCCATCTACGACATCTGCCGCCGCAACCTGGACATCGAGCGCCCCACCTACACCAACCTCAACCGCCTCATCAGCCAGATTGTGTCCTCCATCACCGCCTCCCTGCGCTTTGATGGGGCCCTCAATGTGGACCTGACtgagttccagaccaacctggTGCCCTACCCTCGCATCCATTTCCCGCTGGCCACCTATGCACCAGTCATCTCTGCCGAGAAGGCCTACCACGAGCAGCTGTCAGTGGCAGAGATCACCAATGCCTGCTTCGAGCCTGCCAACCAGATGGTGAAGTGCGACCCCCGGCACGGCAAGTACATGGCCTGCTGCCTGCTGTACCGCGGAGATGTGGTACCCAAGGATGTCAATGCTGCCATCGCGGCCATCAAGACGAAGCGCAGCATCCAGTTTGTGGACTGGTGCCCCACGGGCTTCAAGGTTGGTATCAACTACCAGCCACCCACGGTGGTGCCTGGGGGCGACCTGGCCAAGGTGCAG

a score=21736
s chr3           50370390 379 + 160039680 GGGCCCTGAATGTTGATCTGACAGAATTCCAGACCAACCTGGTACCCTACCCTCGTATCCACTTCCCTCTGGCCACTTAT-GCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAGCAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTGAGCCAGCCAACCAGATGGTGAAATATGACCCTTGCCATGGTAAATACATGGCTTGCTGCCTGCTG-TACCGTGGTTATGTGGGTCCCAAATAGTC--AATGCTGCCATTGCCACCAT-CAAGACCAAGCACAGCATCCAGTTTATAGATTGGTGCCCCACTGGCTTCAAGGTTGGCATTAACTACCAGCCTCCCACTGTGGTACTTGGTGGTGACCTGGCCAATGCCCAG
s HiC_scaffold_1 20257871 371 - 233722169 GAGCCAGGAATGTTGATCTGATGAAATTCCAGGCCAAACTGGTTCTCTATCCCCACATCCACTTCCCTTCGGCCACGTATTGCCTCTGTCTTCTCTGCTGAGAAAACCTACCGTGAACAGCTTTCTGTAGCAGAGATCACCAATGCCTGCTTTGAAACAGTCAACCAGATGGTGAAATGTGACCTCCGCCATGG------------TTTCTCCCTGTCATTATCACGGTGATGTGGTCCCCAAAAAATCTTAATGCTGCCATTGCCACCATATGAGACTAAGCATAGCATCTAGTCTGTGGACTGATGTCCCACTGGCTTTAAAGTT-ACCTTAATTACTGGCCTCCAATCATGTTGCCTGGTGGTGACCTGGCCAAGGTACAG

a score=9302
s chr3            50423456 344 + 160039680 CGGAAAGAATTTCTTTCTGTTATCCTTCCATCTCTCCTTCATGCTTCTCTTTCTTCTCTTCCGAGGTAAGCTGCAGAAACTAGAACCTGTCTTCCCCTAAGTGGCTCATAGAAGCCAGAAGTGATCTCCAGCAAAGCCAACAGAACAACCTAGAAATATATCTCCCACATTCT-CTGCCTTCTTGTG--GAAGGTAGCTGCACAGTTCTCTGCTA--TACCTTGTCTCACAATACATCATGAGATTCTCAGGTGAGA-GAGGATCTATCCTATTGCCAGGAGGAAGAAACGTTACACAGAGAAACCAAGGGGAGTCCAAGTAGACAGAGCTCACTTAGTTTCCTC-CAGTC
s HiC_scaffold_1 135262256 343 - 233722169 CAAAAGCAATGTCTCTTTGTGATCTGT--ATTTCTCTCTCCTAGTCCCCTTTCTCCCCTC---AGGCAGGCCATAGAAGTGAGA---CATATTTCCCTATGTGGATCATAGAAACTAGAACTCATCTCCCTTAAAGGCATCCATAAAATCTAAAACTATCATTCTGGCCTTCTTCTGCCCTTCTGTGTAAAAGTTGGCCATAAAGAAATCCCCTAACTACTATGCCTAAGACTAGATCATAAGATCCTCCTTCTACATGGAGACCTGCCCTATTGCCAGGCAGAAGAAACGCTACATAGAGTAGCCATGAAGAATCTGAACAGACAGGCTTTGCCGGATTTCTGCTCAGTC

a score=6942
s chr3            50828286 281 + 160039680 AGCATGTGTTAAGTATCCTTTCTCCAGAATGCACAGGAGCAGAGGTGTTT------------------------GGAATATTTGTGTCCATATAATGAGATGTATGAGAGATAGAACCCAAGTCTAAATGTGAGACTCACTTACGGTTTATAGGCACCTCCGATGCAGAGCCTGGAGATGATTTTGTACGATATTTTTGACTTCTTTGTATTTTAACACCTCTTAG--CATGCAAGGTCAAGTGTGGAAAGTTCCAATTGCAGCAACCAGTCAGTATTCAATAAAACGTTCGTTTTGGTTTTTGTTG
s HiC_scaffold_1 112013984 301 - 233722169 AGTACAGATTGAATATCCCTTATTTGAAATTTTTGGACCCAGAAGTGTttcaaatttcattgtttttggatTCTAGAATATTTGTA---ACATAATGGGATATCTTCAAGATGAGACCCAAGACTAAATACGAAATTCATTGATGTTTTATATACACCTTATATACACATTCTGAAGGTgattttatgcaatattttttatgtacTTATATTTT---GCTTGTGAAGTCATATAAGATCAGTTGTGGAATTTTCCACATATGGTGTCATGTTGGCAGCTACAAAATTATGGATTTTGGATCATTTTG

a score=7191
s chr3           50838577 137 + 160039680 GGAAGTGTTAGGTTCCTAATCATTTGCCAGATGTTCACTGGTCAGAACACTGAGTGTAGACATGGCTTCTCTCTTCTCTGCCACTGACTGATGTACGTGTGACACAGCAGCCATACCTCTAATGCCTCTAGGGGTGG
s HiC_scaffold_1 39210487 134 - 233722169 GGCAGTGTCAGGCTACTAATCATT---CAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=4684
s chr3           51273014 147 + 160039680 GAGTACCACGGATACAGAGAGAATACCACAGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACC
s HiC_scaffold_1 82970695 147 - 233722169 GAGTACCAGGCATGCAGTGTGCATACCAGGTGTGCAGTATTTATACCAGGCATGCAGTGTGAGTACCAGGCATGCAGTGTGTGTACCAGGCGTGCAGTGTGCATACCAGGCATGCAGTGTGTGTACCAGGCGTGCAGTGTGCGTACC

a score=4431
s chr3           51273034 147 + 160039680 GAATACCACAGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACC
s HiC_scaffold_1 82970695 147 - 233722169 GAGTACCAGGCATGCAGTGTGCATACCAGGTGTGCAGTATTTATACCAGGCATGCAGTGTGAGTACCAGGCATGCAGTGTGTGTACCAGGCGTGCAGTGTGCATACCAGGCATGCAGTGTGTGTACCAGGCGTGCAGTGTGCGTACC

a score=4371
s chr3           51273054 137 + 160039680 GAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAG
s HiC_scaffold_1 82970695 137 - 233722169 GAGTACCAGGCATGCAGTGTGCATACCAGGTGTGCAGTATTTATACCAGGCATGCAGTGTGAGTACCAGGCATGCAGTGTGTGTACCAGGCGTGCAGTGTGCATACCAGGCATGCAGTGTGTGTACCAGGCGTGCAG

a score=3842
s chr3           51273074 122 + 160039680 GAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGAGAGAGTACCACGGATACAGATTGT
s HiC_scaffold_1 82970695 122 - 233722169 GAGTACCAGGCATGCAGTGTGCATACCAGGTGTGCAGTATTTATACCAGGCATGCAGTGTGAGTACCAGGCATGCAGTGTGTGTACCAGGCGTGCAGTGTGCATACCAGGCATGCAGTGTGT

a score=33401
s chr3            51401810 1503 + 160039680 AGTTAACTGACTTTTTTTTTTAAAAATAACTCCGCAAGATAAAATTCTGGTTTATTGTTGGACATAA---TTTCACACATACATCAAACAGGCCAAAAAAACCAAAAAAAACCAAAAACCAAAAAACagccgggcagtggtggtgcatgcttttaatctgagcacttgagagatagaggcaggtggatctctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacagagcaaccctgtcttgaaaaaccaaaaTAAAATAAAATAAACAGCAACTTCATAGACaaaaaaaaaaaaaaaaaaggaaaaaaCCTTTTTATCTTTGGCCTTTTAAAACCATCTTATACAAACCAACTACTTATAGTACAGCTAGGTACACACACAGAAAGTTACTGGAgggctggagagatggctcagtggttaagagcacggactgctcttgagttcaaaacccagcaaccacatggtggctcacaaccatccgtaatgagatctgacgccctcttctggtgcatctgaagacagctacagtgtacttataataataaataaatCTTaaaaaaaaagaaaagaaaagaaaagaaaGTTACTGGAGTGCTCCGAATAAGATTG-CTTGTTGTTGTTTT---AACTAGGTTTTTTTTCTCCTTTGAGATTATAATGAACATGGTCACACCACAAGTAAAGTCCGAAGTAGGACAGAAAACGCTCTGAAGGCTTGTTTGATCACCCGTTATCGTTAAAAATAGCTGACCCCTAACAATATGTAC-CCAAATATAAAATGTAAATAAAAAATACCAACACATTTTCCTTT-TAAAGTATTTTTAAGAAAAAAAAAAGCAGGGTCTGGGAAGTTCTGATTCTTTTTATTTCCCACGTTGCCAGTTCATGTTGTGGTTTTGGTGGGGGCGTGGAGAGCGCATGTCACCTGTGGGTGCCACTGCCTGCTGTG----------------------------------------CTTCTCTGCTCTAAGGTGACCACG---------------------------TGAACTGGTCGCAGTG-----TGTAAGGTTAGCTTTTCCT-TTTGCTGTCTAGTCATCCTCCTTAGTCTTCTGCTTCTTGGCGTCGACATCATTATCCTCATCAGACTCAGCTACCCGCTTGCCCGTCGGAGCCTCAGCTTCCTCATCTTCATCCCAtcctcttcctccccgtcaccttcctcctcctctcctcctcctcctccccttcctcctcttcttcATCTACCTCGTTGTCTGCCTCCTGCTCACCATTTTCCTCATTTAGAGCGTTCCTATTGGCAGGTA------CCATTCTCTGCCTCCTCTACAACGCCCTCCTCCTTCAAGTCCTTGGTGGTGGTCTCAGAGCTGGTGTCCACTGCCGCGTCTGACTTGATGGGGCATGCTGGTGGTCTGATGCTGCGAGTAAGAAATTAGTCGAG---TTCGAGGACTCTGGCGAGAAAGCTGCCGGAGTCCGCATTAGAGGAGTCGGTGGGCAGCGAAAGTGGCTGCATGACCTGGGAACAGCGCAAAGATGGCTTTT
s HiC_scaffold_1 127512065 1173 - 233722169 aattatttatttttatttttttagaacacctcagcaaaataaaattctggTTTGTTGTTGGACAACACTGTTTCACACATACATCAAACaggccaaaa----cagaaaaaaaaaaaaaaaaaaaa-----------------------------------------------------------------------tcaaagtaaa-------------------------------------acaaaacaacc-------aaaaaaccaaaa--------aaccaacagcaacttcatagattaaaaaaaaaaaaaggaaaaaaagaaatcttttctcgTTGGCCTTTTTAA-CCATCTCATGCAAACCAATTACTCATAGTACGGCTAAGTACATACAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAGTTACTGGAATGCTCAGAataagattgttttgtttttgctttttaaacaaggttttctttctcctttgaggTTGTAGTGAACACGGTCACACTGGTCACACCACTGGAAGGAGGACAGAGAAGGCTGCGAAGGCCGGTTGGGTCATCC-TCATCATCAAAACCGGCTGACCCCAACCAATATgtacaaaaaatataaagtgtaaataaaa---acaaacaaatattccTTTCTaaagtacttttaag--aaaaaaaagcagggcctTGGAAGTTGTGGTTGTTTTTTCCTCCC-TGTTGCAAATTCTCCTGGAGGGCTCCCCGGGTG-GTGCAGAGTG-GTGTCCTCGGCAGGGGTCGCTGTCCGTGGAGGGCGGGGTGGGGGCGGGGTGGAGGGGGGGCGGGGGCGGGCCTCTCCCAAGTGAAGGTGACCAGGTTTAGAGCCTAGATGGGAAGTGGAGACTGAATAGGTCACGGTggccttttta----taatttttcctgtttgcTGTCTAGTCATCCTGC-CAATCTTCTGCTTCTTGGTGTCCACCTGGTCATCCTTATTATCTTCAGCTTCCCGGTTGCTCGtagctgcctctgcctcctc--------ctcctcctcttcatctctgt--------------tctcctcctcctccctggcttcctcctcctcctcctctacctcaTTGCAGGCC-CTCATTTGCCATTCTCCTCGCTCC---TGTTCCCGTTGACGGGTGTCGCGCCCATTCTCCGCCTCCTCCA---------CCATCTTCAGGTCCTCGGTGGTGATCTGGGAGCTGGTGTCCAA-GCCACGTCTGACCTGGTGAGACATCCTGGTGGATCAGTGCACTGAGTGAGCAGGAAAGCGAGAGTTGGGGGGGCTCTGGCAAGGGAGC------------------------------------------------TGGTCAGGGAACAGTGCAAAGATGGCTTTT

a score=4436
s chr3            51407340 75 + 160039680 TATTTCCAAAGTTTATTCCAATCCATTTCTTCTTTTATACTCCAAAACATCTTCATTGTGTGTTTGGATGAGCTA
s HiC_scaffold_1 113339089 75 - 233722169 TATTCCCAAAGTTTATTCCACCCTATTCCTGCTTTGATATTCTGAAATATCTTCATTGTGCTGTTTGATGAGATA

a score=18671
s chr3           51636440 538 + 160039680 tcttcttcttcttcttcttc----------ttcttcttctATTAAGAAAATTTATTCAGTAGACTTAGGCATCTGCAATGGTGACTTCAACCTCAACTCCTGGCTCAATACTGATGGAAGAAATCTGCTTAACAATCTCAGAAGGACTATGTAAATCAATGAGTCGCTTGT--GGATCCTCATCTGGAAATGATCCCATGTCTTGAAACCTTCACCACAAAGtgt------------tttgtttt-----------------------------------attttgtt------------------------------------------------------ttgttttg-------------------------------------ttttTTGGTAGTGATTCTCAATGACTCGGTAGGCATGCACACCGGTCCTTTCACTTTCAGATTCTTTTCCTATGCGCCTCTGATCAAGTCCGCACAAACCTTCTCCAACGACTTCACGTTTCGGCTAGTGAGCGTGATTCGAATTCAGTGAATCGCCACTTCCGGGCTCCACGGGCGTCTTTCTGGTATCTTTAAATGCCACGGCTG-AGGGCGGCTTCCTGATCGACTTGTTCCTCAGCTGGAGTGAGCAGCCGTAAGTCAGGA--CGGAGCAGACTGGGCAGAGCTCCGCAGCATGCACCAC
s HiC_scaffold_1 37918106 679 - 233722169 tcttctgggtttttttttcccaacaattgattatcattttattaaaa---------cagtTGCTATAGGAATCTGCAATGGTGATTTTAACCTCTACTGTTGCCTCAGTACTGATGGAAGTAATTTGTTTAACAATCTCAAAAGGactatgcaaatcagtaagtCACTTATAAAGATGCTCATCTAGAAATGACCCCATGTCTTGGAACCTTTGCTGCAAGGTGTTTCTGGGGTCTGTTTGTTTTCAAacagtctctctatgcagtgaaggctggctttgaatttgcttatgtagcctaaattggccttgaactcgtggcatgcctcctgtctcagcctcccttgtactgggatcacaagtgtgcatcaccatacccagtAGGGCATTTTTCTTGTAATGATTCTCAAGGTCTTAGTAGGCAAGCAAATGAATCCTTTCACTTgtagattctttttctttgcccCTCTGATCAAGTCAGGACACAGCTTCaccataaatttcattttatggcTGCTGAGGTTAATCCTAATTCGGTGAATTGTAACCT-CGGGTGCCATGAGTGTCTTTCCAATATCTTTAAAAGCCATGGTAGCAGTGTGGGT--CTGACTAACTTGTTCCTTGGCAAGAGGGACCAGCAGTGAGTCAGGGGCAAGAGCGGATGCGACCAAAACCCACTGCACCCACAAC

a score=12392
s chr3            51636479 214 + 160039680 ATTTATT----CAGTAGACTTAGGCATCTGCAATGGTGACTTCAACCTCAACTCCTGGCTCAATACTGATGGAAGAAATCTGCTTAACAATCTCAGAAGGACTATGTAAATCAATGAGTCGCTTGTGGATCCTCATCTGGAAATGATCCCATGTCTTGAAACCTTCACCACAAAGtgttttgttttattttgttttgttttgttttTTGGTAGTGATT
s HiC_scaffold_1 170557143 207 - 233722169 ATTTATTAAAATAGTTGCCTTAGGCATCTGTGATGGTGACTCCAACCTCCACTCCTAGCTGCATACTGATGGAAGTAATCCACTTAACAGTCTCAGAAGGGCAGTGCAAATCAATGAGTCACTTGTGGATCCTCGCCTGGAAATGATTCAATGTCTTAGAAACTTCACCAAAAggtgtttt-----------tcttgttttcttgattGGTGGTAACT

a score=4810
s chr3           52236891 695 + 160039680 TTTTATGTTCTTATCCCTCGGACCACAAATGAGGGGACTCGGAGTGGGAGGTACAGATGGGTAGAACACAGCCAGAATAATATC-----------------TGAAAAGGAGAGAGAATTTGAAGCT----GTCATTACATAG----GCAACACTACCTGATATTACATGCAGAATACAAGTGGAAAACGCTTTCCGTCTTTTGCCTTTGGTTAGAAACCATCTGGTGGTAGAGAAAATGTGCAGGCCTGAGAGGGT-GATTGCAGCCAAGATTATTACAATGGTTGCCATGAAAACCATGCCTCTAAT--------CTCCTTGACTGTTA------CCTGGAGGCCTAAGAGCCTTAAGAGCTGTGG-AATATCACAGGGGAAAAATGATGAAGTCTATTGGACCCACAGCATG-GTAATG----AGAAGGCTGCAGCTATATACAGGAACCCAGACAACATAGCACTGAGTCATGGCACAGCCATTATCTGAATGCAAGCACCTTGATTC---ATGATCTCATAGTGCAAGGGCCAGGAGATGGCCACATAGCAGTCATAGGGCATCATTGTAAG--GGCGGCTGTCTCAGTAGAAGCCAAGTATATGAAAAAGAAGGCTTGAAGAACACATTCAAGGAAAGAAACAAGATGTCG-TGAGTACACGGGTTGATAATAGATATGGGAACTGTGACAGAGATGTAGCAAAAGTCTAACATAGTCAACTTTCTT----AGAAGTACATTGGGG
s HiC_scaffold_1 51515191 725 - 233722169 TTTTATCTCCTGATTCCTTAGGCTATAAATGAAGGGATTCAGCATGGGTGTGACTATGGTGTATAACACAGCCACAATGACATCCTTTTCATTAGTATTATTGGAAGAGGGAAAAAAGTAGAGCCCAATAATTGTTCCATAGTACAGAGAAACTACACAG----AGGTGAGAGCCACACGTGGACAAGGATTTGCAGATTCCTTTAATGGAGGGAGCTCTCAGGATGGTGGCCCCAATGT--AACCATAAGACACCAGAATGCA--CATGAAAGGCAGAATAG------TGAACACCAGTCCTACGGTGAGAACAGCCAGTTGGTTGATAGTGGTGTCTGAA---CTAGATAGTTTAAGTAAGGTGGTGAGGTCACAAAAG--AAGTGGTGGAGaatgttgtttttaaagaaagagagatggGCTAGAAGGAT---GGTGTGTAGAAGAGCATTGGCAGAAGATAA--GACCCAGGGCACAGTTACTAGAAAAAAGCAGCGTCTCTGGCTCATGATGATGGTGTAGTGTAAAGGGTGACAAATGGCCACATATCTGTCATAGGCCATTGAGGTGAGAAGGAGGTTG--TCAAGACctgcaaacaacaaaaaaaaatatacctGACAAATACACCCAGTGTAAGAGATGAACTGACTCTGCATCAGCATATTGATGAGCATCTTTGGAGCCGTGACTGATGAGAAAGAGATGTCGGTGAGAGCCAGGTggctgaggaagaagtacatggggg

a score=12316
s chr3           52425407 382 + 160039680 CCTTGACCAAAAACGCACTACACTAAGCCATCTCCAAGTTCGAAGCATTCAGCAAGTGGTGGCAAGGCAGAGCCATCAGAAGAGGATTCCTAATTTCCATGACAAATATGGAAATGCTATATTAGCAGGTGGAGGCATCTTCTGTGTTTCTATATGGACATATACAGCTACACAAATTGGAATAGACTGGAACCTGTCCCCTGTTGGCAGAGTCACTCCAAAGGAATGGAGAGATCAGTAGTCATGCCAGCTGGTACAATAATCAAGGATTGTTTCAAAACCAACTCAGAAGTGAATGCCAAGTCAAAGAATCATGTACTCATTAAACTATGGCAGATTGAAGAACAAATAAAGAAACACAGTACCTTGAAACCAAAAAAAA
s HiC_scaffold_1 82974671 366 - 233722169 CCTCGGCCAGCAGCGCAGTA-----AGTCTCCTTCCAGCCCCAAGCATTCCTCAGATGGCAGCGAGGCAGAGCCACCGGGAT-GCACACCCGATCTCC-TGGCAGATGTGGCGGCG-GGTGTTGGTTGGTAGAGGCACACTCTGTACCGTCCTGTGGACACAT-CAGCAACACGAATCAGGGCACAGTGGAGCCTTTCCCCTGTTGG-AGAGTTAC--CAGAGGGGAGGAGAGATCAGTACTCATGCCAGCTGGTGTAACACAGCTAAACTGTTTCAAAAGCAAATCACAACTG-ATGCCAAGTAAGAGCGCTGTATGTCCATTAGAATATGGTATATTGAAG---AAATAAAGTACAACTGaaaccttaaataaaataaaa

a score=3651
s chr3           52571147 86 + 160039680 GGTATGTGATAGTTTATCTTGACCATAACCTTGATTGACTTGAGAAGTGCCTGGAAGGTGGTAAAACACACTGCTACCCATCTCTG
s HiC_scaffold_1 80475722 85 - 233722169 GGTCTGTGGTGGTTCATTTTGACTATCAACTTCATTGACTTGAGAGACAGCTGGAGATTAGTAGGACACATT-CTGGGCATGTCTG

a score=32450
s chr3            52612720 1329 + 160039680 tttttttttttttttttttttt----tttAAAGTTCAAGTGTTAAGGCTCTCTGCTCC---TCCCTGTTCCAGAGACAGCTGCATCTTCTTGTGCAGTGTCAGCCT----CGTCCCGTAGACAAAATGGTGAAGGTCGGTGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCATCTGCAGTGGCAAAGTGGAGATTGTTGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCTACTCACGGCAAATTCAACGGCACAGTCAAGGCCGAGAATGGGAAGCTTGTCATCAACGGGAAGCCCATCACCATCTTCCAGGAGCGAGACCCCACTAACATCAAATGGGGTGAGGCTGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCGGGGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGAACCACGAGAAATATGACAACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAACTGCTTAGCCCCCCTGGCCAAGGTCATCCATGGCAACTTTGGCATTGTGGAAGGGCTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCTG-GAAAGCTGTGGCGTGATGGTCGTGGGGCTGCCCAGAACATCATCCCTGCATCCACTG----GTGCTGCCAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCA-TGGCCTTCCGTGTTCCTACCCACAATGTGTCCGTCGTGGATCTGACGTG--------CCGCCTGGAGAAACCTGCCAAGTATGATGACATGAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCCACTGAAGGGCATCTTGGG--------CTACACTGAGGACCAGGTTGTCTCCTGCGACTTCAACAGCAACTCCCACTCTTCCACCT-------------------------------------------------------------------------------------------------------TCGATGCCGGGGCTGGCATTGCTCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATACGGCTACAGCAACAGGGTGGTGGACCTCATGGCCTACATGGCCTCCAAGGAGTAAGAAACCCTGGACCACCCACCCC---AGCAAGGACACTGAGCAAGAGAGA---------------GGCCCTATCCCAACTC-GGCCCCCAACA--CTGAGCATCTCCCT--------CACAATTTCCATCCCAGACCCCCATAACAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAATAAAGTTTGCTGCACCCAACCAAAAAAAAAA----------AAAGTTCAAGTGTTAAAAG
s HiC_scaffold_1 224193721 1400 - 233722169 tttctttctcttccttttcgtTCCAGTTTATCATTCAAAAAAGATGTGTCCCTGCCTCAACTTCTCATTTTGCAGACAGTCACACCTTTTCATGAAGTGCTATGCCATTGCATCATTGAGACAACAATGGGAAGACTGGAGTAA-----TTTAACTGTAATGAGTGCCTAATCACCTTGGCTGACTTTAACTCCAGCAAACTGGATATTATTCTCATCAGTGACCCCTTCATTGACCTCAACTACATGCTACACACATTCCACTATGATTCCATCCACA-CTCCTTCAATGGCACA-TCAAGGCTAAGAGCAAGAATCTTGTCAACAATGGAAAGCCCATCTCCATCTTCCAAAAGCAAGATTCCATCAACACCAAACTAAGTGATATTGGTGCTGAGATTTTTATAGAATCCATTGTTGTCTTCACTACCTTGGAGAAACTAAAG---TATATAAATGTTGGA---------------------GCCCCTTCTCCTGA-GAACCCATATTTATGAAGATTGTAATCCATGAGAAGTAAAATAATTACTTTA------------------CCTATACTACTAACAGC-TAACCCACCTAACCAAAGTCTTCCATGAAAACTTCGGCATTGCAGAGGAGCTCATGGTTTTAGTCCATGCTATTACTGCTATCCAGAAAAGTGTAGATGGTTCTTTTGTGAAAAGTATGCCATCATGGCCTTGGGGCTGCCCAGAAGAGCATCCTTCTAATTACAGCCATATACTGTCA---CTGTAAGCAATGTCATTCC-TACAAGAGTGAGAAGCAGTCTGGAACTAACGTTCTGGGTTTCTACTCCCAATATATCAGTCATAGATCTGATCTGGAGAAAGATCTCCTGGAGAAAGCAGCTAAATATGATGACCTTAAGA---TGGTGAACCAGGGCTCAAAGGAATC-CTTAAAAGCATCTTGAAAAAGATTCTTTCACTAAGGACCAGGTTGATTCCTGTGACTTTAACAGTGGTATATGCTCTTCctctttagggaaaaaaaaaaaaataggatagttggtttttgttttttttttttttttttattcaaaagaaCCACTTTGGGAAACTTTatagatagaaaaatagaaaCGTTGGTGAGGGGGCAGGGA--------AATGCCAACTTCATTAGACTCATCTTCAGATATGACAATGAATCTGGCTACACAAA---------------------------GACATCCAAGGATTGGGCCTTCC-GGATCACCAGCTCCAGGAGAAGgaagagtaagaaagaaagacTGTCTCATGCTATGGATCCCTGCTCAACTCTGTCCTTCAACACCCCGAGGATCTCCCCTTTTTTGGCATAGGTTTTACCACAGACTCC--TTACAAAGGATGGGTCTTTTTCATCCATGATTAATC-------TACTTTAAATCTACTTTgctgagacaagaaaaagaaaaaaaatacagaggaaagTTCTATAGCTGAAAG

a score=48631
s chr3            52612771 1253 + 160039680 TCCTCCCTGTTCCAGAGACAGCTGCATCTTCTTGTGCAGTGTCAGCCTCGTCCCGTAGACAAAATGGTGAAGGTCGGTGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCATCTGCAGTGGCAAAGTGGAGATTGTTGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCTACTCACGGCAAATTCAACGGCACAGTCAAGGCCGAGAATGGGAAGCTTGTCATCAACGGGAAGCCCATCACCATCTTCCAGGAGCGAGACCCCACTAACATCAAATGGGGTGAGGCTGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCGGGGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGAACCACGAGAAATATGACAACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAACTGCTTAGCCCCCCTGGCCAAGGTCATCCATGGCAACTTTGGCATTGTGGAAGGGCTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGTCGTGGGGCTGCCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTG---TTCCTACCCACAATGTGTCCGTCGTGGATCTGACGTGCCGCCTGGAGAAACCTGCCAAGTATGATGACATGAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCCACTGAAGGGCATCTTGGGCTACACTGAGGACCAGGTTGTCTCC--TGCGACTTCAACAGCAACTCCCACTCTTCCACCTTCGATGCCGGGGCTGGCATTGCTCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATACGGCTACAGCAACAGGGTGGTGGACCTCATGGCCTACATGGCCTCCAAGGAGTAAGAAACCCTGGACCACCCACCCCAGCAA---------------GGACACTGAGCAAGAGAGAGGCCCTATCCCAACTCGGCCCC-CAACA--CTGAGCATCTCCCTCACAAT----TTCCATCCCAGACCCCCATAACAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAATAAAGTTTGCTGCACCCAACCAAAA
s HiC_scaffold_1 135784275 1215 - 233722169 ttcttctcattttacagacaGCAACATCCTTTCATG----GCCACCTATATACCTGAGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGGGTGCTTGGCTATCCAGTCTGCTTTCAGGACAGGCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAG-------------TCCAGGAGTAAGA-TTTATCAGCATCAAAATGGGTGA-ACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGATACCTGT-TACTTGTGATGGGCCTGAACTACCAGAAGTATGACTGCTATCTCAGGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAACCCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATCA----CCAGGTCATCCTTCTTATACAGAAGAC--TGGATGGCTCTTCTGGAAAACTGTAGCTTGATAGGCATGTGGCTGCCCAG---ATCATCC-----TATGCTGATGCTGCCAAGTCTATGGTCTAGATCACCCCTG-GCTGGATGCCAAGACTACTAGCATATGCTTCTGTGGGCTGCCTAC---TAGCTTGTCAGTTGTAGGTCTGACATGCTGTCTAGAGAAAGCTGCAGAATATGATGACATCTGTAAGGTGGTGAAACAGGCACTGGAGGGCCC-CTAAATGACAACCT-GGCTAca--gaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGATCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCAGCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAGTA----------GGCCACCAGCCTgagcaagaaatgaaaagagagggGCTTTAAGCTGAGGAAGTGTCTTGCCCAAACTCAGCCCCACAACACTCTGAGACTCTCTCCTCCTGTGGGCTCCCATGCCAGACCTCCTGAAGAAGGGGAAAGA------------TGCTTACTCTGTCATGTACCATCCGTAAAGTCCACTGTG-CCACCCAAAA

a score=17866
s chr3            52612852 1009 + 160039680 AACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCATCTGCAGTGGCAAAGTGGAGATTGTTGCCATCAACGACCCCTTCATTGACCTCAACTAC-ATGGTCTACATGTTCCAGTATGACTCTACTCACGGCAAATTCAACGGCACAGTCAAGGCCGAGAATGGGAAGCTTGTCATCAACGGGAAGCCCATCACCATCTTCCAGGAGCGAGACCCCACTAACATCAAATGGGGTGAGGCTGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCGGGGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGAACCACGAGAAATATGACAACT-----------------------------------------------CACTCAAGA----------------------------------------------------------------------------------------------------------------------------------------TTGTCAGCAATGCATCCTGCACCACCAACTGCTTAGCCCCCCTGGCCAAGGTCATCCA-TGGCAACTTTGGCATTGTGGAAGGGCTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAG--ACTGTGGATGGCCCCTCT---GGAAAGCT---GTGGCGTGATGGTCGTGGGGCTGCCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCGTGTTCCTACCCACAATGTGTC-----CGTCGTGGATCTGACG----------------TGCCGCCTGGAGAAACCTGCCAAGTATGATGACATGAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCCACTGAAGGGCATCTTGGGCTACACTGAGGACCAGGTTGTCTCCT--GCGACTTCAACAGCAACTCCCACTCTTCCACCTTCGATGCCGGGGCTGGCATTGCTCTCAATGACAACTTT-----GTCAAGCTCATTTCCTGGTATGACAATGAATACGGCTACAGCAAC----AGGGTGGTGG-ACCTCATGGCCTACATGGCCTCCAAGGAGTAAGAAACC----CTGGACCACCCACCCCAGC
s HiC_scaffold_1 229906324 1176 - 233722169 AATGAATTTGTCTGTATTGGCT--CCAGTTCCATAGGCTGCTTTT---------GAAGGGGATGTTGCAGCAGtcaatgtctctttccttgacttCA--TACTGTGGACTAGATGTTCAGAAATGATTCTGCCCATGGCAAGTTCAATGGCGCTGTCCAGGCGGACAAGAGGAAG--TACAGTCTGTAAGAATCCCAATTCCACTTTTCAGGAGCAAGATCCCTCCAGCATCAGAT--AGTGATGC-GATGTTGAACACATGCTGCAATCCGCTGTGCTCCTCATCATCTTAGCCATAGGCAGCACCCGCTTCGGAGGTGAAGCC-AAAGTATTATCATCCCTACCACTTGTGTCGATG-CCACATACTTGGAACAGGAGAGAACTATGAGAACGATGATTGCTTCGAGATTGTTggggctgggtatggtggcacacatccataatcctagcactcaggaaggatGAGACAGGAGAACTGGAAATTTAAGCCCAGGATGTATCTACTTAGCAACTAAGAGAGACACTTTTTCAAACATATAAGCAGGGGATGGGAATGCAGAAAGGCCCAGtattgcaaattaaaaatatatacatatatcagcaatgccacctgcA-TACCAAGGGGT--GGACACCTGGCCAGTGTCAACTGTTAATAACTTCTGTAAT-TGGAGGAATTTAAGGCTGTGGTCTATGCCATCACTGTCTCCCAGAAATTATTCTGAATGCCCCCTCTTCCAGCAAGCTCAGTTAACGTTA----------GCAGTCC------CTGTCCCTGGAGCC-CTGACCCCGCCATGGCCGTGTGCAAGGCTATTCT-GAGCTGAGCAGGACGCTCATTGAATTGGCCTTCCAGCTGCCCATTCCCGGGGTGGCGAGCTTGTGGAGGGTTTGATGAAACATAGATTTAATCTGCCTCTGGGACAAAGGTGTCAAATATAATATCAAGAAG--GGGGATGAAGCAAATGTCATGGAGCC--CTGGAAGGCACCTTGAGCTGTTTACAGGAATAGCTGGTTGCCTTGGTGACATCTACTG-----TCTGCTTTT------------CTGGGGTGGGTATTCCTCTGAGTGAATACTGTACTCCGGTTAGGTTATTTCCTGGTATGACCATGAATCTGGCCATAGCAACTGTGGGGGTGGAGGTACTTTATGATTCACAAGATCTCTAAGGAGTCAGAGTCCTGAATTCGAGCCCCAATCCTAGC

a score=4806
s chr3            52729674 292 + 160039680 ATTTGGCTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAG--TTTTTAATTTTAGCAA-ACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAG
s HiC_scaffold_1 230809764 281 - 233722169 ATATTGCTTTTCCAAATTGCTTGGAACCGAA-------CGTCCTAAATAGAGGACTTTTTGGGTTTGGAAATAGTTGTGTCCATGCATCGAAATATCCTGTGGATACTCATGTCTACACATGcaattc--atttctatttcatgCTGTCTTTATACAAATATCCTG----AAGGTAgttttatacagtatttttagaATGCCTGCCTTTT-ATTGCAAGCCATCACATTAGGACAGGTGTGGAGTTTTCTTCTTATGTTGTCCTGTCTGTGCTCAGAAAATACCAGATTTTAGAG

a score=7832
s chr3           52729680 289 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTG---TTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTA------ATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCA-------------GAAGGCTTTGGATTTCAGAGTTT
s HiC_scaffold_1  9970933 304 - 233722169 CTTGTTTGAAATGTTTATGGCCAGAAAACTTTTAGATTTTGAATCTC---TTTCAGATTTGAGaacatttacatatatgtatacataaagaGATATTCTGGGGATG-----AGGAGCAAGTGTAAACATGaagttcattta-tatttcatatgtacCTTACAGACATAGTCTAAAGTTAGTTTTCTACAGTATTTTTAGTGTACTTATGTTTTGAGTGCAGCTTAATACGTGAAGCCATTGGTGGAATTTTCCAC-TGAGGCATCATGTCAGCACTCAGTTTCATATTTTGGAGAATTTTGGATTGCAGATTTT

a score=8183
s chr3           52729680 302 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTT----TGTTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATC-AAGTGGAATCCTGAACTTTGTTTAA--------TGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAG---TTTGCAGTAGGGGTTC
s HiC_scaffold_1 12341320 301 - 233722169 CTTGTCTGCAATACTCGGAATCAAGAGAgtttccaatttttaattttt---tttttaattttggaatatttgcatgtaCATAATAACTTCTCTTGGGGATGG------GATCcaaatctaaacataaaattcCCTTGACTCATAGCTATTTTATACATACAATG--------TGAAGgtaattttaaacaatatttttagagCACCTGTATTTTGACTGTAATCTGCCATATGAGGTCAGGTGTGGAATTCTCTACTTCTGGCATCATGTTAGTGCTCAAAACATTGCCGATTTTGAAGTATTTTGGGCTTGGGATTC

a score=7390
s chr3           52729680 278 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTT----AATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGAT-CAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACAC---AGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGA
s HiC_scaffold_1 66172918 270 - 233722169 CTTATTTGAAATGCTTGGGATCAGaaa-gattt---cagatttcagattttgggGGAATTTTTGGAATAGTCTCAAaacataatgagatatcttgg------aGCTGGGATACAAATCTAAACTTAAAATTCACTT---GTTTCATATATACCTCATACATATGGCCCCAAAGTAATTTTATATAGCATTTTCACTGTGCCTGAGTTTTGATTATAATCCATCATGTGAGGTGAGGTGTGAAATTTTCCACCTGTGATATCATGTTGGTGCTCAGA---TTTTgga

a score=8115
s chr3            52729680 280 + 160039680 CTTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTT-TTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACAC---AGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATT
s HiC_scaffold_1 202635515 267 - 233722169 CTTATACAGAATGCTTGGAATCAGAAGTGATTTGC---AGTTTAGAATTTATGGATTTTGGGATATTTGCATA------ATGAGATACCTTTGGGATG-----AAGCCCAAGTGCagatataaaattcattta-tgtttcatatgcACTTCATACACATATCCTGAAGGGAATGTTATACAGTATTTGTAGAATTCCTGCATTTGGACTGCAGTGTGCCATATGAGGTCAGGTGTGGAACTTTCTACTTGTGGTGTCATATTAGTGATC--AAAGTTTCAGATT

a score=6281
s chr3           52729681 294 + 160039680 TTGTCAGAAATACTTGGGAACAGAAATGGTTTG---TTTGAATT-------------------TCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTA--ATGAGACATCTTGGGGAGGGAGGTAAGATC-AAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT-TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAG-----GCTTTGG---ATTTCAGAGTTTGCAGTA
s HiC_scaffold_1 35954115 315 - 233722169 TTATCCGAAATTCTTGAGACTAaaagtgttttggattttggattctttcctttttttttttttttttttttttcattttg---aacttttgtttttgtacaatgaagtat--------GTGAGATGTGACCCAAgtctaaaaatgaaattcattta-tgtttcatatataccTTACATACAGATTGCAGGTAACTTTGCACAATATTTTTAGTAAACCTATGTTTTAACTGTAGCTGATCACATTAGGTAAGTTGTGGGAATTTTCAC-TGTGACATcatgccagcactcaaaaatttatattttggagcatttcagagtTTGAATTA

a score=6696
s chr3           52729681 284 + 160039680 TTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTAA-----TTTTAGCAAACTTGCAT--ATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGA
s HiC_scaffold_1 13384324 274 - 233722169 ttatttaaaatgcttggCAACAAAAATACTTC---TAatttagtagtttttaaaaagagtcaGGAATATCTGTATGTATACATGATGAGCTACTTTAGGGATG-----AGACTCaaatctaaacatgaaattcattta-tatttcatgtacACTTTACACACAaggcctgaaggtaattttacacAATGGTTTAA-----------TTTTGACTGTAATCCATCACATAAGGCCAGGTATGGAATTTTTCACTTGTGGCATCATGCCAGTGATCAAAACTATTTACAGTTTGGA

a score=8252
s chr3            52729681 292 + 160039680 TTGTCAGAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTTAATTTTAGCAA-ACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATC-AAGTGGAATCCTGAACTTTGTTTAA----TGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTTGCAG
s HiC_scaffold_1 167387420 285 - 233722169 TTATCCTAACTGTTTGGAACcacaaatatttca---gattttagattttttaatttttttaatatttgcaaatatgCAATGAGGTATCTTGGAGATGGAAGCCAAGTCTAAGTATAAAATTGATTTATGTTTCAAATATACTTTATACATATAG---------CCCACAAGTAGTTTATACAATGTTTTTAGTGCATTTGCATTTTGACAACAACCCATCACATGAGGTCAGGTGCGAAATTTTCCAATTGGGGCATCATGTTCATACTTA-AATATTTTGGAGTTTTGAGTATGTAG

a score=7011
s chr3            52729681 288 + 160039680 TTGTCAGAAATACTTGGGAACAGAAATGGTTTG-TTTGAATTTCAAGTTTTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT-TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTT
s HiC_scaffold_1 213556976 272 - 233722169 TTATCCAAAATGCTCAGGACTAGAagtattttgagttatttttcagatttttgaattt-------tcatatatatatagtgagaAATCTTAGTGA------TGACACCGTCTAAACAC---AAATTCATGTaa-gtttcatatattctatacgCATAGCATAAAGGTAATTTTGTAATGTATTTTT-GTGCATCTGTATTTTGACTATAGTCTCTCACATGAAATCAAGTACAGCATTTTCTACTTGTAGCATCATGTCAGTGCTCAGACAGTTTCTGCTTTTGGAGTTT

a score=6721
s chr3            52729687 281 + 160039680 GAAATACTTGGGAACAGAAATGGTTTGTTTGAATTTCAAGTTTTT---AATTTTAGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTT
s HiC_scaffold_1 141125441 244 - 233722169 GAAGTACATGGGACCAAGAAT-------tccaatttctcattttttcaaaatttggaaCATTTACATAAATATAATGAGACA-----GAATGGGACTCAAGACTAAACAG------GAAATTTATTCA----------------------TGGCCTGAAGGaatttttatacagtatttttagtgTGCCCACATTTTGACTGCAGCCTATAAAGTGAAGTCAAGCGTGGAATTTTCTATTTGCGGTGGCATTTTGATGTTTAAAAAGATTTAGATTTTGGATTT

a score=6648
s chr3           52729714 251 + 160039680 TTTGAATTTCAAGTT---TTTAATTTTAGCAAACTTGCATATCCGTAATGAGACATCT----TGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGA
s HiC_scaffold_1 53185714 253 - 233722169 TTCAAGTTTTAGgttattttggattttggaatatttgcttatatataatgaaatatctgtTTTGGAGATG-----AAACCCAAGTAtcaacatgaaattcattta--tttttatatacactgTATACACATAATATAAGTgtaattttatacagtatttatagGGCACCTGTGTTTTACCTGCAAATTATCACATGAAATTAGGTGTTAAAATTTGCACTTATGGTATCATGTTGGCTCTCAAAAAG-TTTGGATTTTCGA

a score=4889
s chr3            52729719 250 + 160039680 ATTTCAAGTTTTTAATTTT-----------AGCAAACTTGCATATCCGTAATGAGACATCTTGGGGAGGGAGGTAAGATCAAGTGGAATCCTGAACTTTGTTTAATGTTTCATGTACACAGT---TGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTT
s HiC_scaffold_1 179626912 247 - 233722169 atttctaattttttatttttcttggattaTGAGATACTTGGACAAGCATAATGATAAATCTTAGGGAAGAGACACAAGTCAAACAG------GAAATTCCTTTG-TGCTTTCTATATACCGTATATACAAAACCTAAAGG--CAGTTGTACAGGCTTTTAAGTATGCTCACATCCCAAATACA--------CATGAGATGAGGCGTGGCACTTTCCACATGCAGTACCACGTTAGTACCCAAAACGTATGAGATTTCAGATTTT

a score=5485
s chr3            52729804 162 + 160039680 TTTGTTTAATGTTTCATGTACACAGTTGCCCGGTCTCAGGGTCCCTTTGTACAATGTTTTCAGTAC----CCTTTTGTT-TTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAG
s HiC_scaffold_1 200965990 163 - 233722169 TCTGTTTCATGTTTAGTTTACACCA----ACAGCCTGAAGGTGCTCTTAGACGATATTCTGAATGCACCCCTTTTTGTTCTTGACTACGACCCATCACATGGGGTCAGGTGTGGGATTTCCCCCTTGTGGCACCATATTGGCACTCTAAAAATgtcagattttggag

a score=5845
s chr3           52729841 122 + 160039680 AGGGTCCCTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCA
s HiC_scaffold_1 61201172 120 - 233722169 AgggtaattttctaaaatattttcagtccacTTGTGTTTTGATTGTAACTTGTTATATGAGGTCAGATGTGGAATTTTCTATTTGTGGCTTCATGTTGATGCCTAGAGGGTTTT--ATTTCA

a score=4902
s chr3            52729848 135 + 160039680 CTTTGTACAATGTTTTCAGTACCCTTTTGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTTGCAGTAGGGGTTCA
s HiC_scaffold_1 199580760 134 - 233722169 ccctgtgCAGTATCCTTAGCACCCTGT-GTTTTGGCTGTTGCCCATCACATGAGGTTGGAGGTGGGATTTTCCACTTGTAGCACGATGTGGATGCTCAGAAAGTTCTAAGTTCTGGGGactagggatggagctca

a score=4455
s chr3            52729875 95 + 160039680 TGTTTTGACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTTCAGAGTTTG
s HiC_scaffold_1 191087149 95 - 233722169 TATTTTGAATACAGCTTGTCAAATGAGATCAGAATTAGAACTTCCCACTTGTGGTGTTAGCTCAGCATTCAACaagttttagattttgaaatatg

a score=3557
s chr3            52729881 80 + 160039680 GACTACAGCCTGTCACGAGAGGTCAGGTGTGGAACTTTCCACTTGTAGTGTCATGTCAGAGCTCAGAAGGCTTTGGATTT
s HiC_scaffold_1 173752919 80 - 233722169 GACTGTGTCCCAGCACATGATGTTGGGTGTAGAGCTTCCCACTTGTGCCGTTATTTCAGTGCTCAAAAGTTTTGGAATTT

a score=3833
s chr3            53233260 157 + 160039680 GATGAAAGAGTCAGGCCTTTAAACACTATTACCTAGGTTCATGACACAGGCCCCTGTAGCAAAAGGTAGATCAGTAAGGGAAAAGCATGTGCATGTATTTAAAA---TAAGTGTTATAGGACCTCTGCTCTGATGAGAAGGTAAAGACATTGTGCAGATG
s HiC_scaffold_1 125927413 157 - 233722169 GAGGAAAGAGTTTGTCCTCCACCTA--AGTGATAAGTTTTACAACTCAGACCCATATAACAAGAGATAGGTTAATAAGAGAACAGCATATACACGTATTTAATGTTTTACATGGCATGGGAGC-CTTCCAAAATGAAGACTCAAAGGAATGGGGGAAATG

a score=3577
s chr3            53233292 80 + 160039680 CTAGGTTCATGACACAGGCCCCTGTAGCAAAAGGTAGATCAGTAAGGGAAAAGCATGTGCATGTATTTAAAATAAGTGTT
s HiC_scaffold_1 172716068 80 - 233722169 CTGGGTTCTAGGCTGAGGCCTCTGTAATGGAAGACAGTTTAACAAGAGGGAAGCATACACATGTATTTAATAGAAGTTTT

a score=5468
s chr3           53346473 174 + 160039680 GTGCCATCGTGTGAATCCTTACAGACCCAACTTCTTTCTCCATCAGTGTCTTCTCTTGGAGTTGTACCTGATTTTGTTACCAGTTTTCATCAGAATCCATTGAGGAATAGGACAATTTTGCTTTTGTTTCTTGACTAAGTATAttagggttctctagagtcac---agaacatatgg
s HiC_scaffold_1 12249109 175 - 233722169 GCGCCACCCCACGTGCCTTTGTGGATCCAGCTTGGTTCTTCTCCAGTGTCTTTCCTTGGCATTGAACCTGATTGTAATCCCGATTTCCACCCAGATCTCTTAGGGAATGGGGGGATTTTGGTTTTTTATCCTGACCAGAAATCCTTGA--TCCTGAAAGTCTCATGAGAAGATGTGG

a score=7834
s chr3            53346479 172 + 160039680 TCGTGTG-AATCCTTACAGA-CCCAACTTCTTTCTCCATCAGTGTCTTCTCTTGGAGTTGTACCTGATTTTGTTACCAGTTTTCATCAGAATCCATTGAGGAATAGGACAATTTTGCTTTTGTTTCTTGACTAAGTATAttagggttctctagagtc---acagaacatatggatag
s HiC_scaffold_1 114989361 176 - 233722169 TCATGTGCAATTCTTACATTTCCCAACTTGGTCCTCCTCCAGTGTCTCCTCTTGGAGTTGTACCTGATTTTACTACCAGTCTTCATCCAAATCTACTGAGGAATGAGACGATTCTGCCTTTGCGTCCTGGCCAGGAATCACTTGATTCT-GAAAGTCTTGAAAGAAGACATGGTTAG

a score=6952
s chr3            53346480 146 + 160039680 CGTGTGAATCCTTACAGACCCAACTTCTTTCTCCATCAGTGTCTTC-TCTTGGAGTTGTACCTGATTTTGTTACCAGTTTTCATCAGAATCCATTGAGGAATAGGACAATTTTGCTTTTGTTTCTTGACTAAGTATAttagggttct
s HiC_scaffold_1 171540804 146 - 233722169 CGTGCAATTCCTTACAATTCCGCCTCGGTCCTCCTCCAGTGTCTTCCTTTTGGAGTTGTCCCTGATTTTGTTACCAGTCTTCATTCAAATTCATTCAAGAGTA-GATGATTCTGATTTTGCTTCTTGGCCAGGAATCTTTTGATTCT

a score=5967
s chr3            53346500 106 + 160039680 CAACTTCTTTCTCCATCAGTGTCTTCTCTTGGAGTTGTACCTGATTTTGTTACCAGTTTTCATCAGAATCCATTGAGGAATAGGACA-ATTTTGCTTTTGTTTCTTG
s HiC_scaffold_1 233246285 107 - 233722169 CAGCTTGGTCTTCCTCTAGCATTTCCTCTTGGAGTTGTACTTGATTTTGTTACCAGTTTTCAGGTGAATCCATTGAGGAAGGAgatgttttttgcttttgcttcttg

a score=3300
s chr3            53347189 47 + 160039680 CCAGGAATCACTTGATTCTGAAAGTCTTGTGAGAAGATATGGCAAGA
s HiC_scaffold_1 171540931 47 - 233722169 CCAGGAATCTTTTGATTCTGAAAGTCTTGTGAGAAGGCTTGGTTAGA

a score=3547
s chr3            53347189 63 + 160039680 CCAGGAATCACTTGATTCTGAAAGTCTTGTGAGAAGATATGGCAAGAAGCCAAATCAGGCATA
s HiC_scaffold_1 114989491 63 - 233722169 CCAGGAATCACTTGATTCTGAAAGTCTTGAAAGAAGACATGGTTAGGTTTGGAGGCAAGCACA

a score=8185
s chr3            53406807 432 + 160039680 GAAAATCAGCCAAGGCCTAGACACTC-AAACATAGATTCCTTAAG-----CTAATTGTCCATGTAA-------------TCTTTCAGAAAGAGTCTCCAGAATGTACTCAAGGATGGTTTAAAGCTGACTTTTCAAGACTGAGCA--CACAAGAGAAGCCAGCTTGTCT------GGCTAAGG-----------------ACACGGTAATAGCCCCCCAAAGAAGCTTTCAACCTGGACAGGAACATGATGACTACTCACAACTGTGCAAAAGAAGCCTATAACTCCTTTTCTTGCCATCCAAACAACAAGCAACCTCTCCCCATTCTCTTAATTTA--------TGTTACCTACACATAAATTAAGAGACCTTGGGGACAGATCTGAACTTAT-----AGTTCCTGGCCCCCTTGTAGGTCACTCATTACCAGTATAATACATTCTTTTCTCCTTGCAAGAATCCAGTACTATATAGCACTGAGTCCT
s HiC_scaffold_1 167024865 456 - 233722169 GGAAGTCAGTCAAGGCTTAGACATTCTGGACCCCGATTCCTAAAATAACACTGATTCCTAAAATAACAAAGTGCTGACGTTTTTCAGGAAATACTTTCAGAATCTATTGA--GATGGTTTGAAACCAGCTTTTCAAGAATGTACATGCTCAGAAGAATCCAGCTCACCTTTTGATGTCTAAATCTCAAAATCTCCTTCTCAGACTATAACTTTCCCAAACAGAA-CTGTGTGCTTGCAGAGGCACA-----GCTGTCTACATCTTTGCAAAAGAACCCTAAAACTCCCTTTCTTGTCATCCAATCAACAAGCAAattctcccctctcccttcctaTAAATTCTCCCGCTACCAACCCA--------------TTAGGGAGACGGTCGAGCTTTTTCTTCTGCTCCTGA--CCTTTGT--GCCAC---TTGACCTTAAAATAAAGCTCTTTCTCTTTGTAAAAA--CAGTGC--CACAGCATTGACTTCT

a score=4286
s chr3            53445849 81 + 160039680 CACATACAATTGTGTGTGGTACATAATCTTTGATAATAAGTGACTTTGTTATGGCTTTATGTATTTGCTGCAAAATAGTTT
s HiC_scaffold_1 101371508 81 - 233722169 cATATACAGTTGCATACAGTATGTAATACTTGATAATAAATGACTGTGTTATGGGTTTATGTGTTCACTGTActatattct

a score=4915
s chr3            53857864 136 + 160039680 TTGTACAGCAACAACAAATACCAGTATTTATTCTGAAAGGCTGT---GTGTTCCAACAAGCATATATTAGCAGCTTCCAACTCGGTCTCTAGGAATGATTCTCAGTTCTGAGCCGTGCTTCAGGAAAA-CATTCCCTACA
s HiC_scaffold_1 229656457 139 - 233722169 TTTTACAAGAACAAAATTTATGA-TATTTATCTTGAAAAGTTATCATATGTTCTAAGTAACAAACATTAACAACTTCCAACACAGCCTCTAAGAATAACGCACAGCTCTGAATCATGCTCTGGAAAGGCCATTCCCAGCA

a score=6895
s chr3            54021162 171 + 160039680 GATGGTCAATCCTTTGTTTGAGGAAAGGCTCAGGAACTTCGGCATTGGGCAGGAAATACCTCCCAAAAGAGATCTAACACACTTCCTCAAATGGCCCTGCTACATCAGGCTGCAGCGGCAAAGAGCCATCCTCTACAAGCGGCTCAAAGTCCCTCCTGCCATTAACCAGTT
s HiC_scaffold_1 171413904 160 - 233722169 GGTGATACATTCCCTGTCTAAGAAGAGGTCAAAGAACTCTGGCATTGGACAGGACAGCCAGCCCAAGAGAGCTCTCACCCACTTTGTCAAATGGCCCTGCTGCA----GTGACAGTGGCA-------ATCCTGTGTAGGCAGCTGAAGGTGCCACCTGTGATTAaccagtt

a score=14761
s chr3           54021208 384 + 160039680 GGGCAGGAAATACCTCCCAAAAGAGATCTAACACACTTCCTCAAATGGCCCTGCTACATCAGGCTGCAGCGGCAAAGAGCCATCCTCTACAAGCGGCTCAAAGTCCCTCCTGCCATTAACCAGTTCACCCAGGCGCTGGACAGGCAGACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTCAGCTGCTTAAGCTTGCCCACAAGTACAGGCCAGAGACAAAGAAAGAGAAGAAGCAGAGGCTATCGGCTCGTGCTGAGAAGAAAGCTGCTGGCAAAGGCGACGTCCCAACTAAGAGGCCACCTGTCCTCCGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGAGTCAATACAGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCCCATGGTGTAGACCCCATTGAG------CTGGTGGTTTTC
s HiC_scaffold_1 39262607 735 - 233722169 GGACAGGACATTCAGCCCAAGAGAGATCTCACCCGCTTCGTCAAATGGCCCCGCTACATCCGACTGCAGCGACAGAGGGCGATCCTGTATAAGCGGCTGAAGGTGCCCCCTGCGATCAACCAGTTCACCCAGGCCTTGGACCGCCAAACAGGTGGGCTTTGGGGGTGTGGAATCAGCCTAACTGGAAAGGTGGTGCATGGCCCTGTGTGTAGCCCTGTGGGCTTCTGCTCAACCTGTAGTACTGCTAGGGACTTCGAATTTACATCATGCTAAGCGACAGACTGGACCTGAAACTGCAGGGCCTAATGGAAGGATGCTTTCCTAGCTACCCAGCTGCTTAAGCTCGCCCACAAGTATAGACCAGAGACGAAGCAAGAGAAGAAGCAGAGGCTTCTGGCCCGGGCTGAGAAGAAGGCTGCTGGCAAGGGGGACGTCCCCACTAAGAGACCTCCCGTCCTCCGAGCAGGTGAGGGACCCCTCCTCAGATGTGGTGCTGTGTGGGGGCTGGGCTCtgtagttgtgttttttttttttctgaagtcaCTGTAGACTTAGCTTTTTGACAGTCAAAGCTGGTTGCATCTGCATTCTGGGACCAGAGTGGCCTGGGCATGCACTCACGGTAGTTGTGTTCCAGGTGTTAATACTGTCACCACTCTAGTGGAGAACAAGAAGGCTCAGCTAGTGGTGATCGCACACGACGTGGACCCCATTGAGGTAGGTCTGCTGGGTTTC

a score=26180
s chr3            54021326 630 + 160039680 ACCAGTTCACCCAGGCGCTGGACAGGCAGACAGCTACTCAGCTGCTTAAGCTTGCCCACAAGTACAGGCCAGAGACAAAGAAAGAGAAGAAGCAGAGGCTATCGGCTCGTGCTGAGAAGAAAGCTGCTGGCAAAGGCGACGTCCCAACTAAGAGGCCACCTGTCCTCCGAGCAGGAGTCAATACAGTCACCACCTTGGTGGAGAACAAGAAGGCTCAGCTGGTGGTGATTGCCCATGGTGTAGACCCCATTGAGCTGGTGGTTTTCCTGCCTGCCCTATGTCAAAAGATGGGGGTGACCTACTGCATCATCAAGGGAAAGGCCGGGCTGGGGCACCTGGTCCACAGAAAGACATGCACCACTGTTGCCTTCACACAGGTTAACTTCGAAGACAGGGGTGCTCGCGCTAAGCTGGTGGAAGTTATTAGGACCAATTGTAATGATAGATATGAAGAGATCCGCAGGCACTggggcgggggggggggggggggggAGCGGGCAACTCCCTGGGTCCTAAGTCTGTGGCTCGCAT-TGCCAAGCTGGAAAAGGCAAAGGCTAAAGAACTCGCCACTAAACTGGGTTAAATGTAC-ACTAAGTTTTCTGTACATAAATATAATTACAAAATTATCTT
s HiC_scaffold_1 171414396 543 - 233722169 accaaTTCACCCAGGACGTGGCCTG------AGCTACCCAGCTGCTTCATCTCGCCCACAAGTACAGAGCAGAGACTAAGCAAGAGAAGAAGC-GAGGCAGCTGGCCCAGGCTGAGAAGAAAGCTGCTGGCAAGGA---------GACCTGGGGACC-----------------------------------------TGGAGAGTAGGAAGGCTCAGCTAGTGGTGACTGCACACGACATGGACCCCACCGAGCTGGTTGTGTTCCTGCCTGCCC-GTGTCAAAAGATGGGGGTCCCTTACTGCATCATCAAGGAGAAGGCCAGGCT-GGGTGTCTGGTCCACAG-AAGACCTGCATCACTGCTACCTTCACACAAATCAACT--GAGAACAAAGACACACTGGCTAAACTGGTGGAGGTGACCAGGACCAAATACAACGACAGATACTCTAAGATCTGCCGGCACTGAAG-----------------------AGGCACTGTCCTGGGTCCTAGATCAGTGACTCACATAAACCACGCTGGAAAACACAAAGACTAAAGAGCTTGCCACTAAACTGGGCTAAGTGAACTCCTGAGTTTTCtgtacataaaaataac----aaattgtcct

a score=10920
s chr3           54021570 386 + 160039680 CCCCATTG-AGCTGGTGGTTTTCCTGCCTGCCCTATGTCAAAAGATGGGGGTGACCTACTGCATCATCAAGGGAAAGGCCGGGCTGGGGCACCTGGTCCACAGAAAGACATGCACCACTGTTGCCTTCACACAGGTTAACTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGACAGGGGTGCTCGCGCTAAGCTGGTGGAAGTTATTAGGACCAATTGTAATGATAGATATGAAGAGAT-------------CCGCAGGCACTg----gggcgggggg------------gggggggggggg-------------------------------------------------------------------------------------------------------------------------------------------gAGCGGGCAACTCCCTGGGTCCTAAGTCTGTGGCTCGCATTGCCAAGCTGGAAAAGGCAAAGGCTAAAGAACTCGCCACTAAACTGGGTTAAATGTACAC-TAAGTTTTCTGTACATAAATATAATTACAAAATTATCTT
s HiC_scaffold_1 39263788 761 - 233722169 CCCTCTTGCAGCTGGTTGTGTTCCTGCCTGCCCTGTGTCGCAAGATGGGGGTCCCTTACTGCATCATCAAGGGGAAGGCCAGGCTGGGGCGCCTGGTCCACAGGAAAACCTGCACCACTGTCGCCTTCACACAAGTCAACTCGTAAGTGTTAGTCTGGGCCTCGGGAACAGCGTGTGTGGTATGTGAATCTGAACATTTGCCCATGATGGTTAAGAATTTCTTCACCTGAATAAGCCATGTGGTCATGCTTTATCTGAGGCAAAAGGCTTGTGTTTCACAGTACAGAGGGTGTCATTCCTGCTCTCAGAGATAACCTGAGGCTAAATGCCTGTCCCCTCCCCCCTTGTTAGGGAGGACAAGGGAGCACTGGCCAAGTTGGTGGAGGCAATCAGGACCAACTACAATGACAGATATGACGAGGTGAGTGCTGAGTCCCTGCAGGCCTTGTCCTGGGTGAGGGGAGCTTTCCTCTCGGGGCCGAGGGGTAAAATGGGCTCGAGTGGGACAGGTGCTGCACTGCTAGAACCTTGCAGCCTCTGGGTCCACGCTCATGCTCTGAAAGCCTTGGTGGATGGCAAACCACACTGACTGCTGCTTATCTGTCATTTCAGATCCGTCGTCACTGGGGAGGCAACGTCCTGGGCCCCAAATCTGTGGCTCGCATCGCCAAGCTGGAAAAGGCAAAGGCTAAAGAGCTTGCCACTAAACTGGGCTAAGCGTGCTCTTTGGTGTTTtgtacataaaaacaat----aaattgtcCT

a score=21070
s chr3           54029845 597 + 160039680 CTAGCTCTTCTTATGAGCACC-TGAGGTGACCTGTGAAGATGGTTAGCTACTCTCATGGCCCAGAAAAGCCTAAAAAATTCATGCAAATCAAGAAATTCAAATCTTCCTTGTTTGCTTTAAGC---ACACCCATAACACCTATGGGTACACATATCAGAAAAGTCACCCAAAATCCGAAGGATGCCAGTTTAAAGACGCCATGTGTGT-------GTGTTCCTGGTCCCAGAGTATAATGATGAATGTACTAGGAACTCCCAGGCCAGA--GTGGGGCGGATTGTAGGGTCAGCGGCCCAAAGTGCAGGCTGAATTTTTCCTGCACTCACTTAAAAATGCAGAAAGTATTGCTGAACTTAATGGCTTAGATGTAGAATCTCTAATCACT-AACACATCCA-GTAATCAAATCACCTGAGATGAGCCTACA-AGTTATAGAGCTCATGGTT-GATTAACCTGTACATGGG-TTCCTCGGACACTCTTGGACCATCCTCACTGAAAAGGAACAAATTGTTCCAAAACTAGAAGAGGTAGTGGTCCAGAACAAAAATATATCC---------CTGAAGAAATGAAACCTTATGGCAC-----TAAA-------------AAATGCAGCtaaatattaaaaaaaaa
s HiC_scaffold_1 23840259 625 - 233722169 CTAAAACCTACTGTAAGCAGCGTGAGGTTACCTATGGGAATGGTTTGCTACTCT--TGCCGCAGAAAATCCCCCAACAT-CATGCAAATCAAGAGGCTCAAATCTTCATGTTCATCTTCATGTTTAATACCCAGGCCATCAA-GGGTATGCATATCTGAAAGGCCACCAAGTACCTGAAGGAAGTCCCATTAAAGAAGCACTGTGTGCCATTCTGGCGTTGCC-------------AATGGTGGAGATGGTAGGTGTGCCCAGGCTAAACAGTGGGGCTGGACACAGGGTTGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAAAGAGTAATGCTGAACTTCAAGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGTACTGCTGTATTTACAGAGCTCATGGCCAGAATAACCCATACATGAGCTCCCCCTGCCACACTGAGATGATCCTTACTGAAAAGGAATCAATTGTTCTTAAACCAGAGGAGGAAGTAGCACAGAATAAAAAGATATCccagaagaaactaaagaaacaaaacattatagCATGGGAATAAattaagcataaaataaatgaaaataaaagttaaaaaaaaa

a score=14315
s chr3            54029846 605 + 160039680 TAGCTCTTCTTATGAGCA-CCTGAGGTGACCTGTGAAGATGGTTAGCTACTCTCATGGCCCAGAAAAGCCTAAAAAATTCATGCAAATCAAGAAATTCAAATCTTCCTTGTTTGCTTTAAGCACACCCAT------------------------------------------------------------------------------------------------------------------AACACCTATG--------------------GGTACACATATCAGAAAAGTCACCCAAAATCCGAAGGATGCCAGTTTAAAGACGCCATGTG------------------------------------------------------------TGTGTGTTC------------------------------------------------------CTGGTCCCAGAGTATAATGATGAATGTACTAGGAACT--CCCAGGCCAGA--GTGGGGCGGATTGTAGGGTCAGCGGCCCAAAGTGCAGGCTGAATTTTTCCTGCACTCACTTAAAAATGCAGAAAGTATTGCTGAACTTAATGGCTTAGATGTAGAATCTCTAATCACT-AACACATCCA-GTAATCAAATCACCTGAGATGAGCCTACA-AGTTATAGAGCTCATGGTT-GATTAACCTGTACATGGGTTCC-TCGGACACTCTTGGACCATCCTCACTGAAAAGGAACAAATTGTTCCAAAACTAGAAGAGGTAGTGGTCCAGAACAAAAATATATCC---------CTGAAGAAATGAAACCTTATGGCAC--TAAAAAATGCAGCtaaatattaa---aaaaaaaattttttaa
s HiC_scaffold_1 233280284 864 - 233722169 TGGCTCTTCCTGTAAGTGGCTTGAAATGACCTGTGAAAATGGTTTGCTGCTCTGTTGACCCAGAAAA-----------TCATGCAAATCAAGAGGCTCAAATCT-CTGTGCTCACTTTAAGAACACCCCTgaagaggctgaggatttagctcagcagcataagcacctgcctggcaagagctagGTCGTGAATTAGATcctcaatccttggtacaaaaaaaaaaaaaaaaaagatttaaaaaagaacaccCATGAAACCGCCCAAGCCATTGAGGGTGCACACATCTAAAAGGCCGTCATGTATCTGAAGGATGtcacattaaagaagaaatgtgcagtgctagggatttagctcagtggcataagtgcctgcctctgtcctgcaagcatgaggttgtgagttcatcccCCATAccaccaaaagagagagagagagagaatgagagaagcACTGTGTGCCATTCCAGCATTACAATGCTGGAGTTAGTAGGGATGTGCCCAGGCCAAACAGTGGTGCTGGACCAAGGGTCAATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTACTGCTGAACTGAAGGGTTTAGATGTACATTCTGTGGCCATTGAACATACCCAGGTGAACAGAACACCCATGGCAAGTCACCATATTTACAGAGCTCATGGCTGGATTTACCCATACATGAGCTCTGCCTGCCACAGTGAGGGGATCCTTACTGAAAAGG-ACAAATTGTACCTAAACCAGAAGATGAAgttgcacaaaagaaaaagatacctcagaagaaactgaaaaaacaaaaacttatggCACAGGAATAAATCaagcataaaataaatgcaaataaaaatttttaa

a score=17185
s chr3           54029849 591 + 160039680 CTCTTCTTATGAGCA-CCTGAGGTGACCTGTGAAGATGGTTAGCTACTCTCATGGCCCAGAAAAGCCTAAAAAATTCATGCAAATCAAGAAATTCAAATCTTCCTTGTTTGCTTTAAGCACACCCATAA-----------CACCTATGGGTACACATATCAGAAAAGTCACCCAAAATCCGAAGGATGCCAGTTTAAAGACGCCATGTG----------------------------------------------------TGTGTGTT-----CCTGGTCCCAGAG--------------------------------------------TATAATGATGAATGTACTAGGAACTCCCAGGCCAGA--GTGGGGCGGATTGTAGGGTCAGCGGCCCAAAGTGCAGGCTGAATTTTTCCTGCACTCACTTAAAAATGCAGAAAGTATTGCTGAACTTAATGGCTTAGATGTAGAATCTCTAATCACT-AACACATCCA-GTAATCAAATCACCTGAGATGAGCCTACAAGTTATAGAGCTCATGGTT-GATTAACCTGTACATGGGTTCCTCGGACACTCTTG-GACCATCCTCACTGAAAAGGA--ACAAATTGTTCCAAAACTAGAAGAGGTAGTGGTCCAGAACAAAAATATATCCCTGAAGAAATGAAACCTTATGGCACTAAAAAATGCAGCtaaatattaaaaaaa
s HiC_scaffold_1 49617612 687 - 233722169 ctcttcctgtaaGAGGCCTGAGGTGACTTGTGAAAATGGTTCATTACTCTCTTAACCCAGAAAA-----------TCATGCAAATCAGGAGGCTCAAAtcttt-gtgtatattttaagAATACCCAGGAATTGCCCAGGGCATCAA-GGGTATGTATACCTAAAAGGCCACCAAGTACCTGAAGGATGGCACATTAAAAAAGCAGTGTGGGGCCAGGAACttacctcagtggcataggtgcctgcctggcaagcacaaggttgtaagtttgatccctggtacaaaaaaaaaaaaaaaaaaatcaaaaaaccaatGTGTGCCATTCTGGCATGACAATGATGGAGTTGGTAGGTGTGCCCAAGGCAAACAGTTGGGCA-----CAGGGTCAGTGGCCCACAAAGCA--CTGAATTTTGC-TGCACATGTTTAAAAATGCAGAGAGTAATGCTAAACTGAAGGGTTTAGATGTAGATTCTCTTGTCATTGAACACACCCAGGTGAACAAAGCATCCGAGGTGCG-CTACTGGGCACCGAGCTCTTGGCCAGATTAACATGTGTATGAGCTCCCCCTGCCATGTTGTGATGATGCTTACTAAAAAGGACTATAAACTGTTCCTAAACCAGAGGAGAAAGTtgcacagaagaaaaagatatcccagaagaaacaaaaacttacGGCATGGGAATA---AGTTAATCATAAAAAAAA

a score=8069
s chr3            54030117 279 + 160039680 AGGGTCAGCGGCCCAAAGTGCAGGCTGAATTTTTCCTGCACTCACTTAAAAATGCAGAAAGTATTGCTGAACTTAATGGCTTAGATGTAGAATCTCTAATCACT-AACACATCCAG-----TAATCAAATCACCTGAGATGAGCCTACAAGTTATAGAGCTCATGGTT-GATTAACCTGTACATGGGTTCCTCGGACACTCTTGGACCATCCTCACTGAAAAGGAACAAATTGTTCCAAAACTAGAAGAGGTAGTGGTCCAGAACAAAAATATATCCCTGAAGAAA
s HiC_scaffold_1 134583731 267 - 233722169 AAGGTCAGTGACCCAAAAAGAGTGCTGA--TTTCTCTGA---TACTTAAAAATGCAGA--GTAACACTGAATTTGA--GTTTAGATGTCAATTCTGTAGTCCCTGAATATATCCAGGTGAATGAACAAAACCTCCAAGATG--CTCAC----TATA---CTCAGAGTCAGATGAAGCCATAAATGAGCTCC-CTGCCACACTGAGATGATACTTACTGAAACGGAACACACTGTTCCAAAACCAGAAGAGGAAGTTGCACAGCAGAAAAAAGtatcacagaagaaa

a score=78451
s chr3           54481430 1495 + 160039680 GAACTCGAGTTGGAAGAGGCGAGTCCGGTCTCAAAATGGAG------------------------GGCCATGATC--------CAAA--GGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGAC-ACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGT-GAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTC---GTGGAGGAAACTTTGGTGGAAGAGGTGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtggtgatggtggATATAATGGATTtggaggtgatggtggcaactatggtggtggtcctggttacagcagtagaggaggttatggaggtggtggACCAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGG--Ctatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtggaaactataatgactttggaaattatagtggacagcaacaatcaaattatggacccatgaaggggggcagttttggtggaagaagctcaggcagtccctatggtggtggctatggatctggaggtggaagtggtggatatggtagcagaaggttttaaaataaaacagaaacgg-ctacagttcttagca--ggagagagagcgaggagttgtcaggaaagctgcaggttactttgagacagtcgtcccaaatgcattagaggaactgtaaaaatctgccacagaaggaacgatgatccatagtcagaaaagttactgcagcttaaacaggaaacccttcttgttcaggactgtcatagccacagtttgcaaaaagtgcagctattgattaatgcaatgtagtgtcaattagatgtacattcctgaggtcttttatctgttgtagctttgtctttttctttttcttttcattacatcaggtatattgccctgtaaattgtggtagtggtaccaggaataaa-aaattaaggaatttttaacttTTCAA
s HiC_scaffold_1 69607486 1418 - 233722169 GAATCTAAGTTACAAGA----AGTCTAGTCTCAAAATGGAGTTAAAACTGTTCTACTCTGATTCTGGCCCTCGTCACCCCCGCCAGGCTGAAGCCAGAGCAACTGAGGAAGATGTACATCAGTGGTCTGAGCTTTGAAACTACACAT-------TAAGAGAATATTTTG-GAAACTGGGCACACTCACAAATCATGGGATAATGagagatcctcaa-taaaatgctcCAGGGACTTTGGTTTTGTGACTTACTCTTGTGTTAAAGAGATGGATGCTGCAAAGTACACTCGATCACACAAAGGTGAAGGGCGTGGAGTTGTACCAAAGGGAACTGTTTCTAGAAAGGATTCAGTAAAGCCTGGTACCCATCTAACTG--------ATTATTGTTGGCAGTATTAAAGAAGATACAGAAGAATTCAATTTGAGAGACTACTTTGAAAAGTATAGCA--ATGGAAACCATAGAAGTTATGGGAGATGGGCAGAGGGGAAAAAC---AGGATTTGCTTTTGTAACTTTTGATGGCCATGATAATAGTTGATAAAATTGTTATTCAGAAATACCACACTATTAATCCACACAATTGTGGAAGTGAAAAAAGCCTTTCCTAAACAAGAGGTGCTGTCTGCTGGATCAT-GAGAGGTTATGGAGGTGGATCTGGCAACTTTATGGATTGTGGAAGAAATTCTGGAGGTGATGGAAGGAATTTCAGCCATGATGGAAGAGACCATGATG--------------GGTGGTACAGGAGATGAAAACAGAGGTAGTTATGGAAGAGGTGATGGTGAATATA----------AGGTGATGGTGGAAGCTATGGTGGAAGCCCTGGT----------------------------------CAGGATATGGAAACCAAAGTGTTGGATACGGTAGTAGAGGAAGAAGACCTACAATGGTTCCAATAAATGG------TTATGTTGTGGTAGCTATGGAGGTGTTGAGAACTATAATGATTTTGGAAATTACAGTGGACAACAGCAAACAGATTACAAACAGAT------------------TGCAAGAAGCTCTGGCACTCCA-GTAGTGGTGGTTATGGATCTGATGGTAGAAGTGATGAGTTTGGCAGCAGAGGGTTTTAAAAACcaacagaaaaggacaatagTTCTTAGCAACAGAGAGACAGCAAGGAGTCGTTAGGAAAGCTGCAGGTTACTCTGAGACAGTCATCCCAGATGCATCCGAGGAACCGTAAAAATCTGCCACAGAAAGAATGATGATCCATGGTTGGAAAAGTTACTACAGC-TAAGTAGGAAACCC-TCTAGTTCAGCACTGTGACAGTCACAGTCTGCAAAAAGTGCAGCTACTGATTAACGCAAGGCAGTGTCAATTAGATGTACAATCCCGAG--CTTTTAGCTTTTGTagctttg------tctttttctgttcatTGCCCTAG--ATACTGCCCTGTAAATTGTGGTAGTAGGACCAGGAATGAATAAATTAAgagatttttaacttttcaa

a score=28073
s chr3            54481457 1151 + 160039680 GTCTCAAAATGGAGGGCCATGATCCAAAGGAACCAGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATC---ACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTT-ATG--GGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtggtgatggtggATATAATGGATTtggaggtgatggtggcaactatggtggtggtcctggttacagcagtagaggaggttatggaggtggtggACCAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCtatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtggaaactataatgactttggaaattatagtggacagcaacaatcaaattatggacccatgaaggggggcagttttggtggaagaagctcaggcagtccctatggtggtg-----------------------------------gctatggatctggaggtggaagtggtggatatggtagc---agaaggttttaaaataaaacagaaacggctacagttcttagcaggaga-gagagcgag-gagttgtcaggaaagctgcaggtt
s HiC_scaffold_1 210325314  992 - 233722169 GTTTCTAAACCGGGGTC-----TCTTAAGGAGTCTGAATAGCTGCAGAAGCTCTGCATTGGAGGGCTGAGCTTTGACAAAACCAGGAAGAGGCTGAGAAGCCATTCTGAGAAGTGAGGAACACTTGCAGATTGAGTGGCCACGAGAGACCCAAACACAAAGGGCTGCAGGGCCTCCAGGTTTGTAACTTATGCCAGCATGGAGGAGGTAGACACAGCCTTGAAAGCAAGGCTGCACAAAGTGGATGGAACAGTTATGGAACTAAAGTGAGCTATCTCAAGAGAAGATTCTCAAAGTCCAGGAGCCCATTTAACTGTGAAG---ATCTTTGTGGATGGCATTAAAGAAGACACTGAAGAACATCACCTATGAGATTATTTTGAACAGTATGGAGAAATTGA-----------------CTGACCGAGGCAGTGAAAAGAAGAGGGGCTTTGCTTTTGTAACTTTTGATGACCACGATTGTGTGGATAAGATTGTAATTCAGAAATACCATACTGTGAACAACCACAACTGTGAAGT-AAGGAAGCTCTATCAAAGCAGGGTATGGTTAGTGCTTCATCTGGCCAAAGAGGTC---CAAGTGGCTCTGGAAATTTTGGTGGTGGTCATGGAGGTGGTTTTGGTGGCAATGACAG---TTTTGGTTGCAGAGGAAACTTAAGTGATCAAGATGATTTTGGAGGCCAACATGGCAGCAGTGGA---------------------GATGGCTACAGTGGATTTGG---------------------------------------------------------------------------------------------------------------------------------------------TAATGGTGGAAGCAATTATGGAGGTGGTGGAAGCTACAATGATTTTGGCAGTTATAACA---ATCAGTCTTCAAATTTTGGACCCGTGAAGGGAGGAAAGTCTGGAAGCAGAAGCTC---TAGGCTCTATGGTGGTAGAGTCCAATACTCTACCAAGCCATGAAATTCAGGTGCTGTGGTAGtgccagcagcagcagtagctatGGCAGTGGGAGAAGGTTTTAAATATTGCCAGGAG-----GCAAAGCTTACCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAATCTGCAGGTT

a score=23517
s chr3            54481479 732 + 160039680 TCCAAAGGAACC---AGAGCAGCTGAGGAAGCTATTTATTGGTGGTCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTAATGAGAGATCCCCAAACAAAACGTTCCAGAGGCTTTGGTTTTGTGACCTACTCTTGTGTTGAAGAGGTGGATGCTGCAATGTGTGCTCGGCCACACAAGGTTGATGGGCGTGTGGTGGAACCGAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATTTAACGGTGAAGAAAATTTTTGTTGGTGGTATTAAAGAGGATACGGAAGAATATAACCTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAAAATTGTTGTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATC---ACAGAGAGGTCGTGGAGGTGGATCTGGCAACTTT-ATG--GGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGTCGTGGAGGAAACTTTGGTGGAAGAGGTGGCTAtggtgg---tggaggtggtggcagcagaggtagttatggaggtggt---------gatggtggATATAATGGATTtgg
s HiC_scaffold_1 212566174 730 - 233722169 TCCCAAGGAGACTGAAGAGCAGCGCTGCAAGCTCTTCATCAGAGGGCTGAGCC-----ACCACC-----TAGTCTCAGGAGCCACTTTGAGCAGTGGGGAACACTCACCGACTGTATGGTAATGAGAAATCCGAACACCAAGCGCTCCAGGGGCTTTGGGTTCGTCACTTATGCCAGCgtggaggaggtggaggcagcCATGAAGGCCAGGCCACACCAGGTAGATGGCAGAGTGGTGCTAACCAAGAGAGCTGTATCCAGGGAAGACTCCCAAAGACCGGGTGCCTACCTCACTGTGAAGA---TCTTTGTCGGTGGCATTAAAGA---TACTGATGAACATCACCTACGAGATCATTTTGAACAATATAGAGAAATCGAAGTTATTGAAATCATGACTGACCGAAACACTGGAAAGAAAAGGGGCTTCGCTTTTGTAACCTTTGTTGACTATGATTCTGCAGACAAGGCTGTGATTCACAGATACCAGACTGTCAA-GGCTACAGGTGTGAGGTGAATAAAGCCCTGTCCAGGCAGAAGATGGCTAATGCTTCATCTAGCCAAAGAGGTC---CACATGGTGCTGGAAATTTTGGTGGTGGTCGTCGAGGTGGTTTT---GGTGGCTATGGCAATTGTGGTCGAGGAGGAAACTTCAATGTTCCACGTGGCTTTGGTGGCACTGGGAATCAGTACACTGAAATTGGTAATGGAAGCAATTTTCAAGTGGGCGGAAGCTACATTGATTTTGG

a score=6018
s chr3           54481834 186 + 160039680 TTTGAAAAGTATGGCAAGATTGAAACCATAGAGGTTATGGAAGACAGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGACACAGTTGATAA--------------AATTGTT--GTTCAGAAATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATG
s HiC_scaffold_1 43483084 202 - 233722169 ttttagacTTAGAGAAACATTGAAGTGATTGAAATTACAACTGACCAAGGCAGTGGAAAGAACAGGGGATTCGCTTTTGTAACCTTTGGTGACCATGAGTCTGCGGATAATCCACAGAGTCCAGAATCCACAGACACAGAAATACCACGCCATGTATGGCCACAGCTGTGAAGTGAGGAAAGCCCTGTCCAGGTAGGACATG

a score=6840
s chr3            55109032 238 + 160039680 GTGACAGTCAAGATGTAAACTCACTTAAAA---CTGTGTAAAGTTACCTTAAGCCTGTGTGTGTAAGTTATATATGAAACGTAAATACATTTT--GTTGAAATTTAGGCCTCATCATCTCCCTAATGCCTCATCATGTCTGTACAAATATTC------------TGAATTTTAAAGTGTGCGAAGTCTGAGATATTTCTGCTCCCAGGCATTTTGGATGAGCAATACTTGACCTAGAAGATGCAATACGATGAAA
s HiC_scaffold_1 216639949 248 - 233722169 GTCACAGTCAAAACAAAGGCACCCCCCAAAATACTGGGTAAAATTACCTTTGGACTGTGTATATAAGGTATATATGAAACATAAGTTGATTTTGCGTTTAGACTTTGGTC---TTATCTCTAAAATGTATCAT----TTCATGCAAATATTCCTtttcattatgtatatgtaaacaAATGAGAAATCCAAAAGACTTCTGGTCTCAAGAATTTTGGATAAGGGATATGCAACCTGTATAAGGTGGTATTATGAAA

a score=4167
s chr3           55126913 124 + 160039680 TTTGTGTTCTCTAAGATCCCCAAGTTGAAGTGTCAACCCCCAAAGTCACAAGAGTAGAAGAAGGTGGGGTCATTGAGCAGCAACTGGGTTGTGAGGGAGGAGCTGTTGTGAATAAGACTAGTTC
s HiC_scaffold_1 40597373 124 - 233722169 TTTGCATTCCCTAGGATTCCCAGGTTGGAATTCTAACCACCAAGATGATAATGCTGCTAGGAGGCAGGACCTTTCAGAGGTAATTGGTTTGCGATGGGGGAGCCCTCTGGAACAGTATTCGGTC

a score=4625
s chr3            55336374 258 + 160039680 ATCCCTAATCTAGAAATCTGAAGTCTAAAGTGCACCTAAATCTGAAATATATGGATCCTGACATAAT---ACAAATGGAAAATGCCACGCCATAAACCTTCTGTTTCTCATG-------------AAGCTCATTAGAAACACTGTATAAAATTACCTGTA-GCTGTGTGCACAAAGGCGCACATGAAGCAGAGG---AGAATGGTGTGGGCAAGTTAACAATCTCAGCCCAAGACACTCATTT------TGCAAATGAAAATAATCCAAAACTTAAAAGTATTC
s HiC_scaffold_1 201589900 261 - 233722169 ATCACTAATCTAAAAATCTAAATGCTAAAGTGATCCTAAATCTGAAGTTTTTGAGCACTGAAATGATGCCACAAGTAGCAAATTTCACACC--TGACCTCAGGTGACAAGTGACAGTCAAAATGTAGGCACACTGAAAATATTGTACAAAATTACAATCAGGCTATGTGTGTGAA-----ATACAAATTTGATGTTTAGATTGG----------------GTCCTGTCCCAAGACAGGTATGCAATTAATGTACATGACAGTATTCCAAAATGcaagaaaattc

a score=6870
s chr3           56445278 134 + 160039680 GGGAATGTTAGACTACTAATCACTCAGATGTTCACAGGTAAGGACACTGGGCCTAGACTTAGCCTTTCTACTCTGTGCCACCTACTGATGAACATATAACACAGCAGCCACGTGTACAATGCC-CTTGGGGCAGT
s HiC_scaffold_1 39210487 135 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAGT

a score=53236
s chr3           56608077 4424 + 160039680 [encoded data, 4941 characters]
s HiC_scaffold_1 34545868 4675 - 233722169 [encoded data, 4941 characters]

a score=15208
s chr3            56608312 1068 + 160039680 ggacacaacaataaaagaaaatgcaaaatgcaaaaagatcctaacacaaaacatccaagaaatccaggaca------------caatgagaagaccaaacctatggataataggagtagatgagaat--gaagat-tcacaaaaagggccagcaaatatcttcaacaaaattatagaagaaaacttcccatacctaaagaaagagatgcccatgaacatacaagaa--gcctaaaaaactccaaatagactggaccagaaaagaaattcctcactacatgtaataatcagaacaacaaatgcactaaataaagacaaaatattaaaagcagcaag--------gggaaaaggtcaagtaacatataaaggaaggtctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctgggcagatgttatacagacactaagagaacataaatgccagcctgggctacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattccatgacaaaaccaaattcacacaatatctttccatgaatccaac-------------ctttcaaatgataataacaga-aaaacaaaacaaaacaaa----acaatacaaGGACGGAAACTACACCATAGATAAAGCAAAAAAGTAATTATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAG-------TGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTG--CTGCTTAAAGCAAACCCATCTCAG-GGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAA--ATCAAGGAGGGA----CACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCAT
s HiC_scaffold_1 185221883 1073 - 233722169 GGACAAAACAGTGAATTAGAATTAAGAGTTCAAAGAAGCTATAAGAAAAAGAAT---AGGACTACATAGCAGCTCTTGGATGGCAACAAGAGGAACAATCTGAGGCTGACTGAGGTTAGAGAAAAACTGGGAGATAGCACGGAGGGATTCA-CTAACATCCTTttagaaatcatgaaagaaaatttccca-ataacaagaaaacaat-ttaaagtacAAATAAGCATTGCTCCTAGAACACCAAACAATTACGATGGGAAAAGAAACTCACCAACACACATTCTTATTA-AGTACCAGATATCC--agcaaaaacacaattttaaaagcagtcagaaGGCAGTGGGAAAAGATC---------------TCAAGTCTAGGTAAATCA-GctacacttctcaacacaaacactgaAAGTCAGAAAagcttggagggaagtatttcaagtcctaagaACAactaactttcaacccagattaattTACCTAGCAAATAT-TCCTTCAacatagatggagaaataaagtatttctatGTGAAAGACCAACTCAGAAAATATATGAGTGCTAAGCCAGCTccagaaaaattactttaaaatattcttgacAGATACAGTAAATCAAATCAGATGCAGCTGAAAACAGAGGGAAACT--------GGTGAGGCAATAAACTAAA----CAGCAA--CAAAAGGAa-----ctgggaaaataaaaagcacataCCAGGAGACGAAGACGGCGACGGTAGTAAATGACA----CATCTCAGTAATAGCTC--AGTGTTAATGTCCTCGACTCGCTAATTAAAAGATATAGACTGACACACTGACTCAAAAAACAGAATCCAATAATCTGTTCCACTCAA---GAAATCATCTAATCCAAAAAAGACATTCTTAGACTAAaagttaaagaatggaaaacaacattttatGAATCAGGACCCCTTAAATAAGCAGAGGTATTAATTCCAGTATCAAACATGGAAAACTTCAAATTAAAAttgattagaaatgaaaaagaaggtgtcTCCACTACATACTAGCAAAAGGAACAACCCAACAAGAAGAGAGACTACAGataaacatatatgtaccaaGTACTGGGGCACCTATCTTCAT

a score=20836
s chr3            56608318 1563 + 160039680 aacaataaaagaaaatgcaa--aatgcaaaaagatcctaacacaaaacatccaagaaat-ccaggacacaatgagaagaccaaacctatggataataggagtagatgagaatgaagattcacaaaaagggccagcaaatatcttcaacaaaattatagaagaaaacttcccatacctaaagaaagagatgcccatgaacatacaagaagcctaaaaaactccaaatagactggac-----------------cagaaaagaaatt-------------cctcacta---catgtaataatcagaacaacaaatgcactaaataaagacaaaatattaaaagcagcaaggggaaaaggtcaagtaacatataaaggaaggtctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctgggcagatgttatacagacactaagagaacataaatgccagcctgggctacaatacctagccaaagtc-tcaattaccatagattgagaaaccaaaatattccatgacaaaac-caaattcacacaatatctttccatgaat-----ccaacctttcaaatgat-----aata------acagaaa-aacaaaacaaaacaa---aacaatacaaGG---ACGGAAACTACA--------CCATAGATAAAGCAAAAAAGTAATTATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATC-AAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAG--CACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATA--GATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACA
s HiC_scaffold_1 150311135 1533 - 233722169 AATACTCAAAGAAACTCCAAGGAAtataagagaat--gagagacaattATCCAACAGGTACTATGTGACAATAAGAAGGCCAGTCTAAGGCAAAATggattaagagaaaaattaaaat--ataacacaGATTTACCAATATGGTTTAAGAAATCatagaagaaaaatttccaaatataagAAAGGAGTT--TAAAAAACATTATTGATGCTTACAGTACAGCAAACAAACCtaacaacacaacaacaaaaaacaaagaagaagctTACCAAAGTACATCCTTACTAAATTATGAGatgtccagaaaaaaaaatg------acaatagaaTTCTTttacaaacaa-aagaagaaaacatca-----caCATAAAGGTAAACCAGTTAGAGTCACAGCCTACCTCCTAACATAAACTGTAAAGGCCAGAAGAGATTGTAGTGAAATACCTCACATCTTGAAAGCAAATAATTTTC------------------TAGCAAAagttgtccttcaaaatagatggagaaataaagtttCTCCATGGAAAAACATCAACTCAAAGGATAT------ATGAATGTTAGCCATCACTAAAAATCATTTAAGAATATTCTccacagaaataacaaaactgactCAGCTAAAAACACAGAGGACATGAAAATTCCAAGTAAGATCAATGAATAAAGAGCAACAAAAaatgtcaggaaaa--gaaaagcaaacattcaCCAG--CAGA----------TAAAGAAGGCAGTTATATTCAAGAATCAACACATCTCAGTAGTATCTTTTAATATTAACAGCCTCAATTCTCCAATTAGAAGACAAAGATTGAGAGAATGGATTGACAAACAAAACCCAACTGTC------------AAAACTCATCTAATctaaaaagatattcacagacaaaaaattaaagggtagaaaacaacatttcatgcaCTAGGACCCCCAACACAAGCATGGGTAGTATTTCTAATACCAGA-GATGCTAAATTCAAACTAAAACTGattagaagacagaaagaaaagaactacTAACTAGTCAAGTGAACAatccaagaaaaagagataacattaataaaaatatatgcaccaattcTTGGAGCACCTATGggcataaaacaaaaactgctgaaGTTAAAAGATCAAGTAAACA-CTAATACAATCATAGAGATTTTTAACACCCCACTTT--Tccagagacagatc----aactagaaaaataaaaaaaaaaattcagagctaAACAACACTCTTAAACAAAGAGACTTAGTGCATATATACAGAGTATTGTATCCT-CTGCAACAGAGCATACATTTTCTTCAATAGTTCATGTTACTTTTTCTAAAACAGAACATGTACTAGTCCACAAAGCTTgtgtaagaaaatacaaaagaattaaaattacccAAAGCAT--------------GTGCAATGAAAATAGAAGTCAAAGACAAGAGAATGTTTGTGAAAAGCAAAATCTCC--TGGAAAATTAACAGCCTATCCCtaaataaa--------cacagaagaaacc---aAAGAAATTGACAAATTTCTGGAAGTTATTGGTTGCGACTGTACAACTTATTGAAATTATTGCAATACTATAAAAACA

a score=16874
s chr3            56608405 979 + 160039680 gataataggag-----tagatgagaatgaagattcacaaaaagggccagcaaatatcttcaacaaaattatagaagaaaacttcccatacctaaagaaagagatgcccatgaacatacaagaagcctaaaaaactccaaatagactggaccagaaaagaaattcctcactacatgtaataatcagaacaacaaatgcactaaataaagacaaaatattaaaagcagcaaggggaaaaggtcaagtaacatataaaggaaggtctattagaattactccagacttct-----caccaaagactatgaaagccagaagatcctgggcagatgttatacagacactaagagaacataaatgccagcctgggctacaatacctagccaaagtctcaatt-accatagattgagaaaccaaaatattccatgacaaaaccaaattcacacaatatctttccatgaatccaacctttcaaatgataataacagaaaaacaaaacaaaacaaaacaatacaaGGACGGAAACTACACCATAGATAAAGCAAAAAAGTAATTATTCAACAAACC--------------AAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAGTGATAGGAAG--CAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACT-----GGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAA--ATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCA-AAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAAT-GCAAGGGCAGCCACATTCATTAAA
s HiC_scaffold_1 125873502 960 - 233722169 GATAATAACAGAATTatagaaaaggaggaaaatttaaaagaaatttcaaaagatgTGTTCACTGAAATTATAGTATAAAACattccaaatataggaaaagaattcAATATCCAAGTATAGAAGATCTGTAGAACCCAAAATAGCCACGACCAGAAAAGGAGCTCTCCATGACACATcttaatcaaaattccagat--agtcaacaaaaagagaatactaaaagccattagagaaaaacAGCAAGTAATCTACAAAGGCTATCTCATCAGAATAATGGTGAATTTCTAAGAACAGCAGAAAGATTAAAGGACAGGAGAGCTTGTTGTGAAgtttt-caaaccctaaaagaaaacaactatcaGCCTAAGCTTTCATTTCTTG--AAAATCACACTTCAAAATTAATACAGAAGGAATGAATTTCCATGATGAAGAAAACCTAAAGAAATCCATGGCCACTAAACCAGCATTGCAAAAAATACTTAAGGGAATTCCAGACAGAG---------ACAAGGAGGTCACAAGCATCA-----AAAGTCAAAAGGAAAGTTTACAAATAATTGAGAAAgtagtttaaaaaggaaaaca--taaaggaaTA-------AACACTGGAAAATGATACAATGGCAAATTCAATAAACATCTCACAGTGAGAACTCTCAATGTCAGTGGCCTTAACTCTCCAATTAAAAGGCACAAACTGGCAGATTAAATAGGGCAGAAAAATGAGACCATATAT-----TGCCTAAATGAAACACACCTCATCCAAAGAGAAATATATACACTGAAAGTGAAAGAATGGGAAATGATTCTCAATTTAACCAGAGACCAAAGAAAGA----GGAGTAGCTATCTTATTTTCAGACACAACAGACTGCAAG--CAAAATTATCAGAAGAAACAGAGATGACCACTACATAATGATAAAGGGaacaataat---------------aattacaaatatctatgcaccaaatctCAAATGCA-ccaactttataaaa

a score=58284
s chr3            56608511 3572 + 160039680 aacatacaa------gaagcctaaaaaactccaaatagactggaccagaaaagaaattcctcactacatgtaataatcagaacaacaaatgcactaaa---taaagacaaaatattaaaagcagcaaggggaaaaggtcaagtaacatata-----aaggaaggtctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctgggcagatgttatacagacactaagagaacataaatgccagcctgggctacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattccatgacaaa----accaa-attcacacaatatctttccatgaatccaac---ctttcaaatgataataacagaaaaacaaaacaaaacaaaacaatacaaGGACGGAAACTACACCATAGATAAAGCAAAAAAGTAATTATTCAACAAACCAAA-AAGAAGACAGCCACAAG--AACAGAATG-----CCAACTCTAACAACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGC-----TTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCA----AATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAG-TTATCAAAAAAT-CAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGC--------ACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTG-ACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCA-AAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACA--CAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGAC-AGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAA-GATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACC--------------------------------------------------AGGTAGAT--TTAGGGCAGTG------------------------------TTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCC-----------AACAAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTT-ACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaaagtcttggaaagatcaggaattcaaggccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattag-aaaggaagaagtcaaaatatcac--tttgtggatgatatgatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaaattaactcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacccttcacaatagtcacaaataatataaaataccttggtgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctgaagaa----agaaattaaagaagttcccagaagatggaaagatctcccatgctcatggattggaaggatcaacattgtaaaaatggctatcttgccaaaagca--atctacagattcaatgcaatccccatcaaaattccaactcaattcttcagcaaattagaaaga---gcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct---caatgataaaagaacctctggtggaattaccttgcctgacctaaagctgtactacagagcaattgtgataaaaacggcatggtactggtatagtgacagacaagtagaccagtggaatagaattgaagacccagaaatgaacccacatacctatggtcacttgatctttgataagggagcaaaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcacaactggcggttatcatgtagaagaatatgaattgatccattcttatctccttgtactaaggtcaaatataagtggatcaaggaactccacataaaaccagaggcaccgaaacttatagagggccaagtgggaaaaagcctcgaagatatg--ggtacaggggaaaaaattcctgaatagaacagcaatggcttgtgctgtaag--------atcgagaatcaacaaatggga-cctcataaaattgcaaagcttctgcaaggcaaaagacactgtcaatatga
s HiC_scaffold_1 110469170 3517 - 233722169 aacatacagataagtgaggcatatacagTCCTTAAAAGCCACCATCAGAAAAGAACTCCTCCATGACACATTATAGTCAAAATCC---ATGCAGTCAAACTTAAGGATGGAATCAGTAAAGctgctaaagaaaaa-------caacatctgTTCTGAAGGTAAACAcattagaattacagaaaacttttcaacacaaactttgaaagccaggagagcttggagcgaagaatttcaagccctaaaggaaA--------CAACCTTGAGTGAAatatcttgcaaaactgtcctttaaaattgatgaagaaataaagtctttccatgataaagaacactaAGATTCA---------TGATCATCAATCCAGCACTCtccaaaattttca-------aaaacatctTATAAAGAGATAATA-AAGCTAATAAACCCCA--------AAAGCCTAAAGGAATGAATACATCAGGTAGGATGAGCAGTTAAGCACAAGGCAGGAGATTGATTAGcaaaattcattaataaaa-tagCAGGAATATGTCAATATCCTTCAATAATTACTCTCAATGTGAATAATATTAACTCCCCAATTAA--GACACACAATGACAAAGtagttcaaaaaaca------aaaacttaactGCATGTTCTATATCAAAAGCACTTTAGTTCAAA---tagaaatt--tatagactaaaaaaatggaaaacaacatttaATGTACTACAACCCTCCtcaaaaa-aaacagaagtagttatcctattttcagacaaagtggacatcaaattaaaaaatgatcagaagaggtaaagaaggtcactacatattgatTAAAGCAACAATT---CAATAGGAAATGATAATTATAAGCATACATTCACCAAATCACAGTATGCTCAACTTTATGAAACAAACATGACTAGATATAAAAGATTAGCTAAACATAAACACA----AGTATAGTAAGGGATCTTAATACtccactctcacaaa----tagatcAGTTAGACAagtaatcaaaaagaaaatgtcagagtTGAATTACACCTTCAAACAAACTGACTTAATAGGTTTCTATGGAGTGTTTTACATAAAAACA---GATTAAACATTCATTCCAGAAGTAGATGGAGCTTCATCCAAAAATATATAGTATACAAGCCCACAAAGCATGCTTACAtacatacaaaagaatcaaatttatcctatgcatattattagattatagtgcaatgaaactagaagttAACGGTAaaggaaaccacagaaattatgca--aatgtgGATATATAGCAATGTATTCCTGAATAATCAATGAGTTatataagaaatcaaagaagaaactaGATAGTTCTCTAAATTAAT----AATGtgaatacaacataccagaatgtATACCATACAATGAAAACAGTTTGAAGAGAGattat-agctgtgaatgcccacatcagaaaaatcaAAGCCAGCTAAAGTAATTAATCTAACAGTATACCTCAAGGCaagaggaagacaagaa--aaattcaaatccaaagttaatgtaaagaaggaaattgtcaatatcagaacagaaattaatgatattgagacaaaaa--attat--gaagaatCAATGAAATAAG-AGCTGATTCTTCAGAA----------------TAAACTCACAGCCAGttttaacaaaagagaaagaaaagattat----attGATGCAGTTagtaatgaaaaatgtgaaatcccAACAGACATCACTGAAATCCAGACTATTAGTAa-----tctttgaaaacctctactccaataaattggagaattcgGAAGAAACagac----tcctagatatatatgaattaccaaaactgcaCTAAAGAGATATAAACtccctgaataatccaataacaggcaatgGCATTAAAGCATTAAATAA-AGACTACCAACTC-----------AGAAAAGCCCATGAGCCAATGAATAAACTgcttaccagggattgaactcacaaccttgtgcttggcaggcaggtgcttgtgacactgagctaaaccctcagcccctaaACTGCTTAATTCTACAAGTCCTTCCGAGAGGATATACTGCCAATATTCCTCTAATTATTCAATAGAGTTGAAAGAGAAAGAGTAGTTTCAAAGTCATTCCAGGAAGCTAAAATTACCCTTATTCCAAAACCAGCGAATGactctactaaaaaaaaaaaaataatacatcaaTTTCTttcatgaacatagatgtaaaaatcttcaacaagatcCTAACAAACAGACTATAACATATTATCAGAAAAATCATGCAGCAAGACCAAATaagcttcatcccagggatataAGAACaattcaacatatgtaaaataataaatttagtgTACAACATTaagagaagcaaggacaaaaatcatgtgattaTCT-GATAGACACAGAGAAAGCCTTGAACAAAATC---CACCC--------TGAAAAACTGGCATAGA----------AGGACCTCATCTGGATTTGATAAAAGTGATTT-----------ATGGCCAACATCATATCAAATggggaaaagctgaaagcttttactct-aaatcacaaataagacaaagatgttcaaTATTATCACTCCTGTTGAATACAGTACTTGAAACTTTAGCCG---------GGCATGAGAAAGTAGTAAAAGTGATATGCAATAGTAAAGGAAGAAGtcacattatcattatttgcagataacatgatcctTTATGTAGACGACCCAAAAAAT-------------TCCTAGCACTAGTAAACAAATACAG-GAAGTGgaaggatacaaaataaatacaca-aaaccaAT-ATGTTCCTGTACAATAGTAATGCACTCACTAAGAAAAACGTtagaaaaacaataccattcacagtaCCATCAAGAACAATCAAACACTTAGGAAT-ACCCTAAACAAGAAAGGGGAAGACCTGTACAAGGAAAACTGCAGAATTCTGAGAAAGATCAAAGATGAAAAtag------gaaaatggaacaaaatccC-TGCCCCTGGGTAGGCAGAACCCATATTGTAAAAATGGC-ATATTACCAATACTAACACATACTAATTTAATGCAA--------AAAATACTAATAGGATttctcatagaactagagaaaaatgccact--aaaattcatgcaaaaccaaaacagacctaGGCTAGCAAAAGTAATCCTGGGCAATAATAACAAAACAT---GTGGAATTTCAAT-CCAGATccaaagttatattacaaagctacagtaat-aaaacagtgtggtactggcacaaaaatagatgtgtggatcaaagaaacagaa-agaggatgcagaaacaaccccaggcacattAATTCATCTGACCTGTGGGAAGCAGACAGAAG-TATACAATGGGGAAAAGATAGCCGCTTTA------GGTGTTAGGAGAATCGGCTATACACATGCAGAATATTAAACCTAGACCCTTATCTTTCACCATATACCATgcaca-----aaatggatcaaagatataaatattgaaacataaatatttaatctgctggaagataaagcaagtaaaactcttgaagacataatggTACA--TAAACACTTTtttgaacagaaccccagtgg---gCACAAGAAACAGCTGCCAACAAGAACAACCTGAAGGGACCCTTATCcaatttaaaagctttt--attgCAGCAAGTAACATCAATAAGA

a score=62835
s chr3            56608604 4174 + 160039680 [encoded data, 4552 characters]
s HiC_scaffold_1 109580880 4266 - 233722169 [encoded data, 4552 characters]

a score=23222
s chr3            56608662 2130 + 160039680 ctattagaattactccagacttctcaccaaagactatgaaagccagaagatcctgggcagatgttata----cagacactaagagaacataaatgccagcctgggctacaatacctagccaaagtctcaattaccatagattgagaaaccaaaatattc-catgacaaaaccaaattcacacaatatctttccatgaatccaacctttcaaatgata---------ataacagaaaaacaaaacaaa-acaaaacaatacaaGGACGGAAACTACACCATAGATAA--AGCAAAAAAGTAATTATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGA-------------ATGCCAACTCTAACAACAGAAGTGATAGGAAGCAACAATTAC---------------------TTTTCCTTAATATCTC-------------TTAATATCAATGTACTCAATT----CCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACC-CATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAA--ATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAG-GAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATAT------------CTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAG--CACACAAGCACCTCACACA---AAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATT--GTCCCATGCATCCT-----------------------------ATCAGA---------------------------------TCACCATGGAATAAGGC-----------TGATCTTCAATAACAACATAGATC--------------------------------------------------------------ATAGAAAGCCAAC----------ATTCATGT----GGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGT--CAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCT------------------------------AATTAACAAAATCAGAAATGAAAAGGGA-GACATAACAACAGGT--CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTC---AACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAA-GATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC----------AAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTA-CTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatct
s HiC_scaffold_1 183082679 2291 - 233722169 CTATTGGGATTACAGCAGACT-CTCAACTCATACCTTAAAGGCCAGAAAAGCTTGGAAAGAAAGCTCAGAATCaagctttaaaagaaatcaatttcCAAACCAGGCTGCTATACCCTGCTAAActagctttcaaaactgatgtggata--aagatattttcatgataaagagcatctaaagaaattcatgatcaccaaaccagcactctgaAAGATTCTCAGTGCTATGTTAGAAATGCAATAAATATACCATGCAGTGTGA-----------ACAGAATAGAAGACAAACAAAATGG-----ACTCAGCAAAAGGAAAATAGTCTAATGATAAGAATAAATCAATacttttcagtaataactctcaaagTATAAATGATATCAA-TACCAATCACAACATAGGTTTGGACCAGGGACTTAGCCCAGTGGCTCAAGCCTTGCCTGGtgaatg-caaggtcatgagtttgatccctggtacaaacaaacaaa--aacagtttgACAAGACAGAGA------AACAGTATACTGTGTATAAGAAACaacattt-----acaaagaaatttaTTCACTAAAAATTGAAGGGTACAAAACAGTATTCCAAGTAACAAGAACCTGAA--AACAAGCACAACTATCTTTCCTTCTTCTAGACAAAGAGAACTTCAAGCCAAGTCTCATCAGAA---CAGGCAAAGGCCATTATGTATTGATTAAGGTAACAATTAAAGAGGAAGATAGCACAGTTACAAACATAAGCACCAACTTTTGTGCTCTCAATA---------------TCATAAAGGAAAGACTATCAGATatcaaagatcagataaacatc-aatacAGTTACAGTGGGGAAgctcaataccccattgtcac----agatAGATTGACTAAACAAAAATTTAGCAAACAAATATCACAGTTGAATCAAACTGT-AAATAAATGGACCCAACAGATATCTACAAAATATTCAACCCAATAATAACATAACACACAATCTTCTCAGTAGAACATAGAACTTCCTCTAAAAG-----ATATATAAGCCAATAAAGCATGcttaagcaaatatttaaaaatagaaattccgaCCCATGCAtgttcaatgaaactgaaagccaATTGAAAAACaaccagaggggctggggattgagctcagcggcataagtgcctgccttgcaagcaggcagtcgtgagtttgatccctggtaccagtaaaaaaaaaaaaatgaaaaagacaaaaagaaagaaagaaagaaagaaagaataaaagaaagaaagaaagaaagaaaaacaaccagaGAAATTATGCAAgtacaaagaaattaaacaatatagaCTTGAATAGACAATGAGTCATAggggaaattaaggaagaaattagataGTTTCTAGACTTTAACAATAATGCTTATACAACACACCGAAACTTACAGGtcacaatgaaagcagtattaAGAAGGGCATTTATAGCTGCGAATCCCCATATCAGAAAAGCAGCGTGAACTCACA---------TAATGATGTAcctaaaatttctataaaaagag-----aaattcaagTCCAAAGCTTG---TGTAAcaaactataaagatcagaggagaaattaataaaattgagaataGAAGAC-----------------------ATGAGCtttttcattgaaagaataaataagatagaCAAAATCTTAACCAGTCTtgccaaaaaa-ggaaagacaaaatctTAACCAGTTTtgccaaaaaaggaaagactcaaatcaatagaattagaaatgaaaaaagatgaaGTAACAGTAGACTACATAAAAAAATCCAGAGGATTATTGACAACTGCTTCAAAATTctgtactcaaaaaaaaaaatagagaatttaaaagaaatgaactgaTTTCTAGATGTGCATGAATTACCTAAACTGGAtcaacaaaacttaaaaaaattgaataatcCAAAACTTGACAACTGTATTGCAGTGATAATAAAAATTCTGCTAACC-----------AAGAAAAGACCAGGACTCTAAAGATTCA-CACTGAATACTACAATGAATTC-AAGTAGATCTAACACCTACATTCTTCAAATCCTTTAAAGAAAATGCAAGGGAAAGAGTATTCTCAAAGTTACTTTTGGAAGCTAGAATTACCCCGATTCTAAAATCAGACATAAATTCaaccaaacaaagaaaacttCAGGCCAATTTctataatgaacatagatgcaaaattacTCAGTAAGTCAATAGCAAACAgagt---gaaacaaatgaaaaatag-atgCATCGTGAGAAAATGGGCTTTGTTCCAGGAATCCAAGGATAGTTTGACATACTCATATCAGTACATTTAATGTGTCACATAAA------TAAGGACAAAACTCACAAGAGCCTTT

a score=45396
s chr3            56608808 2718 + 160039680 aaaatattccatgacaaaaccaaa-----ttcacacaatatctttccatgaatccaacctttcaaatgataataacagaaaaacaa-aacaaaacaaaacaatacaaGGACGGAAACTACACCATAGATAAAGCAAAAAAGTAATTATTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGC-TTAAAGCAAACCCATCTCAGGGAA----AAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAA-GTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAA--GCACACAAGCACCTCACACAA-AAGTG---GGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACA-CTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAA--GCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTT-------TAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGC--TTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAAC--TATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATC-TAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTAT-GAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC---------AAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTACTAACCGAATCCAAGAACA-CATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaaagtcttgga--aagatcaggaattcaaggccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcact--ttgtggatgatatgatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaaatta--actcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacccttcacaatagtcacaaataatataaaataccttggtgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctgaagaaagaaattaaagaagttcccagaagatggaaagatctcccatgctcatggattggaaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcagcaaattagaaagagca
s HiC_scaffold_1 121915756 2558 - 233722169 AGAATATTCT-TGCCAGAAACAAAACTGGTTCAACTAACAGCGC-CTAGGAAATGAAAATCTCAAGTAACTTCAATAgataagcaacaacaaaaaatgtcaacaaaagaa---------------agacaaag---------gatTCATCAATAAACAAAGAA---------------AGCAGTGTACTAGCT------------------------AATAATCAACACATCTTAGAATATATCTCGGTTAACAATCTAAATGctccaattaaa--agacagatTGGAAGACTAGGT-CAAACACATAATTGAAAGGTctgctgcattaaaaaaaa---atgtcatgtaATCCAAAAGATACATATAgactaaaaatta---tttcaaaaactgTATTTCAAGAACTAAGACCATGAAAGCAAGCAGTAGCAGCAATTATAATACCAGATATAATAAACTTCAAGCTAACACATGGTAGAAGAGACGAAGAAGGAAACTACATTCTAGTTAAGGGaaaa----tccaagaagaagagatattGATAAATATAAACGCTCTAAATATGGGAATGCCTGTGTTTATTAAACAACAACTGCTGAAATTAAAActtcaaataaacac-taacacagtGAGTATATGGGGATTTTAACTCCCAGCATTC-CAAAGagatataacaaataaacataaaataaata---acagagcTGAAAC--AC--------TCGAACAGTTGGAATTAACAGTTATATACAGAGCATTCCTTCCCCCTATAGCAGAGTATGCATTTTTTTCAGCAACTCACGGTACTTTTGTCAAAGTAGATCACAGACTATTCCACCAAGcctaattaaataaatataaatgtactgCAGTTA-CCCATGTATTTCATTCGAACACTGTGCAAGaaagtaga-aatcaatgacagaagAAATGGTGGAAAAGGCAAAAGTTCC--TGGAAAAGTAATAATAtactcctaaacaaccagtggtTCACAGAAGAtatcaaaaaagaattt------ttttagaaatatggaagttaatgaaattgattgtacaagtaaacaaaacctTTGGGACACTATCATAGCTGTTCTGATTGGAAAGTTTTGCAATTAAtactcacattagaaaaacagaggaaatcCAAGCAAACAcctttttttaagaaatcttaagATACTTGACAAATAACAAgctaa--------------------ggaaagaaattataaaagtaagaGTGGAAATTAAT-ACTTTGAGACcaaaataacaatatgaaataagtCAGCAAagcaaagagctggttcttcaaaagactaaataaaatggACAAGCTCTTAGCAAAAcgtactaaaagaaa----gaaaagattcacatAAATGCAATTAGAAACCACAAatatgaaatcacaacagatactACCAAAACCCAAAAGA----TAGAAACTATTTTGGAAAGTTATATTCtaacaaattagaaaattttaaagaaatggagagataGCAGAGCACATGCAAACTGCCAAAACT-AGCCAAGAAGATATGAATATACTTAACGATCCAAT----CACAAGcaataaaa-tattcagtaataaTCTACCAACT-------------AAAAAGCCTAGTACTTATTGGATTTACAACTGAATTCTAT--GAATTTCTAAGGATATTATATTATCAATACTCCTCAAggtattaaaagaaatttaa--agaatggAGTGCTCCCAAAGTAATTTATGGAAATCACTATATTCCTGATCCCAAAACTAGATAAAAATGTAGCGGGAGAAGGGAACTATTGACTAGTCtcttaaatgaacaaaaatgccCAAATTCTCAATAAcacattggaaaataaaatgtagtatatTATCAAAAGCCtaatataccatgatcaagtgtgTTCCATTCCAGAGATGTAAGAATGGTACAATAGATGTAAGCCTATAAATGTAATAGATcatattta-aaaagcaaggtaaaaaaccacatgatcatatcaatagatgtaga-aaggcttttgacaaaat-cATCACtacttcatgataaaaatccttgaataaaataagtatagGAAGATTATACCTGGATATGATAAAAGCTACCTATAACACGGCAATagccagtattatactaaatggggAAAACCTAAAAGCATTTCGcctaaaatcagaaagaagataAGGATGCTCAGTATCACTTTTTCTAGGCAACATAGTA-TTGAAATATTAGCCCAAACAGTCaaacaagagaaacaaatgaaagagatacaTA-TAGAAAg--agaactcaaattatcattgATTGTAGATGACATGATGCCCTATACAGAAGACCTAAGTAACTCCACTAAAAACTTCAGCAACATACCAAAT---------------------CATAAGATCAGTACTCAAAAAA--TATTAGGATTTATGTATGCTACTAATTAAC-----------------------TCAATACAATTCACAGTAGATTCAATATAAATGAAATAGCTAGGATTTAACTTAACCAAAGCAGTGAAGGACCAATA-AAAGATAATTCCAATGCTCTGTAAAAGGAAATTGATAacaatatcagaaaatagaatgatATCTCCTGCTCCCTGCTAGATAAAACCAATATTTTCAAGACGatcatactctcaaaa-ctgttatcagattcaatgcagtcccaatcaaaattaCTACAACATACTTTACAGAACAGGGAAGAATA

a score=9310
s chr3            56608951 1232 + 160039680 CAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATGCCA-ACTCTAACAACAGAAGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAA---TGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCA---AAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCACACAAAAGTGGGAGACTTTAA-CACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAAC-AGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCC----AACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTAT-GGGACACAATGAAAACATTTCTAAGAGGAAAAGTCA----GCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAA
s HiC_scaffold_1 170082750 1122 - 233722169 caaaaagaaaatatgaaggcAGTAACAAATATAGTAAATCATAATCCAACAGCATCAGTGAAAA---------------------------TCCTAAATGACAATGTACCAAGT----AAACAATTTAGAAGACATTATTGGAATGGATCCA-AAACCAGACCCAGCTCTATGTTATATTCAAGAAGTACATTTTACATACGAAGATACttatatattaaaagtaaatgGATAGACATGGAAATGCCATGCTAGCACTAGTCC----AATAAAGTGGTagtgcttattttaattttaggcaAAACACACTTCTAGTGTAGAAAATTCATTAGAGA--CAAAGGTGAACATTACCTAATGAACAAGAGTCA---TTTTCAAGAAGA---CATGAGGCAAAAAGT----GATGCAAGTGCAAGGAGA-----AATAAATGAATCCACTCTCATA--------------------------------GTTGGGGATTTTAAACACCCCTCTATCAGGAATGGGAAGATTCAGCAGACAGAAAGTCACTAAGGATGCAGTTGAACTCAAGAGCATCATCAATCAACTGGATATAGTTGACTTCTATTGACCACTTCATTGAACATCAGCAGAGTACATATTCTTTTCAAGCTCACATGTAGGAGTTACCAAGATGGGCCACATTCTGGGTCATAAAGTACATCCCAATAAAACTTAAAGGAATAGAAAGCATGCAGT-CATCTTTTTGGACTATAATGAAATCCAACCAGGATTCAGCACCAGAACAATAACTGGAAAGTCTcataatatt----tgaatattaaacaTCACACTTCT-AGTTACACATGAGTCAAAG-----ATAAATCTTAAATTTAACAATACTTTGAAT----ATGaagatgaaaatataatttataaaaattgataGAAATGCAGTAAAAGCAATATTTAGGGGGAAATTTATAATACTTCTTgtctttataaaaa------agaaaaatcaca------taaattaaattttcacCTGAGGTGactagaaaaagaataa-caaatccagaaagcaaaagagtatt------aataataaaaattaaagtagaaatcaataaaactgaaaatagaa-aatcatagagaaaatcaaaaaaaCCATAAGC-TACCGtgtgaaaagat---caaaattcaataGCCTCTAGTC-GAgtcaatgggaaaaaaattaataaaa---aaatcaacaaaactaaaa

a score=68752
s chr3            56608960 3566 + 160039680 AAAAAGAAGACAGCCACAAGAACAGAATGCCAACTCTAACAACAGA----------AGTGATAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAATATCAATGTACTCAATTCCCCAATAAAATGAAATAGACTAACAGACTGGCTACACAAACAGGACCCAATATTCTGCTGCTTAAAGCAAACCCATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTA-AAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAG-AAAGCCAACATTCATGTGGAAACTGAACAACACTCTC-CTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATT--AAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGC---TCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATT-CACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTT-AAGGCTGAAATCAATCAAGTGGAAAC--------AAGAAGAACTATTCAAAGAA---TCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCA------TCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAAC-----------------AAACTTCAGACCAATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttga-aaaaatccaacaccccttcatgataaaagtcttggaaagatcaggaattcaagg-ccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtg------agaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcact--ttgtggatgatat-gatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaaattaactcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacccttcacaatagtcacaaataatataaaataccttggtgtgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctgaagaaagaaattaaagaagttcccagaagatggaaagatctcccatgctcatggattggaaggatcaacattgtaaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcagcaaattagaaagagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttct----caatgataaaagaacctctggtggaattaccttgcctgacctaaagctgtactacagagcaattgtgataaaaacggcatggtactggtatagtgacagacaagtagaccagtggaatagaattgaagacccagaaatgaacccacatacctatggtcacttgatctttgataagggagcaaaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcacaactggcggttatcatgtagaagaatatgaattga---tccattcttatctcct----tgtactaaggtcaaatataagtggatcaaggaactccacataaaaccagaggcacc-----gaaacttatagagggccaagtgggaaaaagcctcgaagatatgggtacaggggaaaaaattcctgaatagaacagcaatggcttgt----gctgtaagatcgagaatcaacaaatgggacctcataaaattgcaaagcttctgcaaggcaaaagacactgtcaatatgacaaataggccaccaacacattgagaaattatctttaccaatcctaaatcagatagggacaaatatccaatatatataaagaac-tcaagaaggtggactccagaaaatcaaataacccattaaaaaatggggtaca-cagctaaacaaagaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaaaatgttcagcatccttcatcaccagggaaatgtaaatcaaaacaaccctgagattccaactcacaccagttagaatg---gttaagatgaaat-----------------attcaggtgacagcagatgctggtgagtatgtggagaaagaggaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcagaaaattagacatagtactaccggaggatcccacaatacctct
s HiC_scaffold_1 207798324 3472 - 233722169 aatgagaagataccaggaaaagaaaaacaaaagatccatcaccagataaagaagaaaatgatagtaAATAATCAATGTATCTCAGTTATATCTTTCAACATGAACAGCTGTAACTCTCCAACTGAAAGACATGAAttggcagactggatcaaaaaacagaatccaacagGCTTCTGCATTCAATAAACTCATCC-----AAAAATATCTACatagactaaaaattaaaagatagaaaacaatattacatGCAACAAGACCCAGAAAACAAATAAAGGTGTCAATTTtaatatcagacacaataaacTTCTAGctaaaactgattagaaga---gacaaggtcactacataattaGATAATGAATCAATCCAACAAGAGATAACATTAAT-----AAACATGTGCACCAAATACTGGAGcacttttcttcataaaatagaaactgctgaaattaaaagatcaactaaacatgaaaaaataataaagaattttaacaTTCCACTTTCAT--------AAATACCAACTAAAAAAACCTAATGAATAAACTTTAGAGCTGAACCACATTTTGAA-CATATGGATTTCATAGATATTTATAGAATATTCCACCCCTCTACAGCAGAGTATACATTCTTTTAAGTAGTAAATGGTATTTTTTCCAAAGTAGGTCACAAAGTATTCCAC-AAGCCTGCTTAAGTAAATTTATAAGGATTGAAATAACTTCATGCACACTATTAGACTAATGTGCCATGAAAATAGAATTCAGTGACAGAAGAAATTCTGGAAAAGCCAAAGTCTCCTGGAAAAATCAGCAACATacacaatcaatg-------ggtcacagaagaaatca------aaatttaaaagaatttctagAAGTTAATGACAATGATGGTACAACTTACCAAGACCTCTGGCAGGCTGTGaaa----ttctaagaggaaaattcattaCATTCAAg-gctcacattaggaaaacagagaaagctcaAATAAGTAATGTTATAAAAAATCTTAAGACACCTGAGAAACAACAAACCACTTCCACCCAAAA------------ATTAAATAgggaaatttaaaagatgaaatcaatgaaattgagacttaaacaaaagtaaagacagttaaaaaaactccaacaaataaaagagttggttatttaaaagaataaataaaagtgataagccTTTATCCAAACtcacca----agaaagagaaaagatttacaTCAATTTAattatgaaggaaa----taaaatcacaacagatactGCTAAAATTCGGAAGAGCATAA----CTACTTCAAAAAT-TATGTTCCAACAAGTTAGTAAAGTTTGAAGAAATGAGTGGATTCCTTGACACATACAAACTCCTAAAACTAACCAAGAAAGACATAAATATGCTTAGTGATCCAATAAT-----AGACAATGAAGTTGTCACTGTTGTAAAGAATTTACCAACt-------------aaaaagcccaggacctgatggattcactactgaattctgcAAAACCTTTAAGGACGCTATATCACTAGTACTCTGTGAGCTcatcaaagaaactgaaagggatgGAGtactctttaattcatttatgGAAGCCAGTAATACCTTGATCCTCAAACTGGAtagagacccaactaaaaaaaaaaaaaaaacaactatagaccaatctccttaatgaacataggtgcaaaaaccCTCAAGATA--CTAGCAAATAGGAGGCAGTGCATTATCAAAAAGATTATGTATCTTGATCAAGTTAGTTTCATCCTAGAGATGCAAGGAtgcttcaacatatgtaaattagtaaatgtaatacatcacattaacAGAGGC-AAGGttaaaatcaaatgatcatattaatagatgtagaaaaggcttttgacaaaAATTCAACAc-----catgataaaaactctgaagaaaagatGTATAAAAGGACCCTATCTAAATTTGATAAAAGT-ATGTATGACAGACCAATAGACAGAATCATaataaatgaggaaaacaaaaaactaaaggcATTCCTTCTATagtcaggaataagacaaagatgttctTCATCACtttttctattcaacatagtacttaaaacattaaccagagcaattaggcaagagaaaaacttaaaaaag-----tgtaggaaaggaagaactcaaattatcacTACTTGTAGATGACATAgatattctacacagaagacccaaaGAACTCTACAAAAGA---CTTAGAATTAATAAGTAAGTTCAGCAGTG----------------TAACACACACAAAGCATAAGCATTTGTGTATACCAATAATATATCTGATGAGAAGGAActtatgaaaacaatgctatttaCAGTAGCttcaagaaataacaaatacc----tatgaattaacataa--aaattaaagaccTCTAC----AAAGCTACAGTATTCTG-AgtaggagattgaagaggatattagaacaTGGAAAGGTGTTACCTATGCCTGGGtaagcagaaccaatattgtcaaaaagGCCAAACTCCCAAAACGGTTATGTGGATCCAATG---TCCCAATCATAATATCACCAGAATACTTTGCAGATCTAGCAATAATAATCCTACAATTTATATGGATCCAatagagacccagaatagcagaAGCAACTTTGGGACAAGAACAAAAAAGA----GGCATAGGTAAC--ACCTGACTTCAAGCTATAATACAAAGCAACAGAGATAAAGATGACATAGTactagaacaaaaacaaatatgtata--aaCAGAAAAGAATTG-GGATACATATACTTCCCTAGACACATTCAATtatttgatatttgacaaagggaacAAAAGCATATGTTGG-----AGATAGTTTATTTGATAAAgtatgctggaaaaactggttatt----tgcagaag-------attgaaacaCAACGCTTATCCCTCataatatactaaattaaaataaaaatggatctaaacat------taaaactaaCATTGTctatttgaagataaaataggACAAAATGGG--------TTAAAGATGTAGGTGTAGGGAAAAGATTTTCCAAATAGAACCTTAATTgcagataaaaaatacaaaaacaaggcTCAAC-AGTGGAATTATATCATACTAAAAAGC-TCTGCTCAGCAACAGAATCAAtcagtagagtgaagagacaacctacagaatggagaaaaatttttgctaagcactcttcagaca-ggactaatatctagaatatacaaagaacaccCCAAAATTAAACCACCGAAAATTAAAGACTCAGTGAAAAAATGGGGAAgagaaaatgaatagacacttcacagaagattaaatacaaatgttcaacaaa----tgtgtaaaaaatgttcaatatgttCAGCTGTTAGAGAAAT-CAAAGTAAAGCAATGCTAAAATTCCATTTTACCCTGGAAAAAATGTCAGTAATTCTGAAATCAAACCAATGATTCTAAAATtgaacaacaaaaaatgctggtgTCATTGTGGTAAAAAAGGAACC-----------------------CAAACTAGTCCAACccttatggaaatcagtattgagttttcttaaagaactgaaattaaaaatttcatatgaCCCACTTATGCCCCT

a score=44675
s chr3            56609151 3311 + 160039680 AAAGACAGACACTACCTCAGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAA----------------AAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACA-AGCACCTCACACAAAAGTGGGAGA---CTTTAACACACCACT-TTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTT--ATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAA-CAACATAGATCATAGAAAGCCAACATTCATG-----TGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAA---------GGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAA---------AGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCA---ACCAAAGGAGGAGC--TTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATC-TAAACAGTCCTATATCCCGTAA-GATATAAAAGCAGTCATCAAT--AGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACA-AAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAA---CAAACTTCAGACCAAT-TTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaattcactatataaacaaactcaaagacaaaa----------------------------------------------atcac------------------atgatc----------------------------------------------------------------------------------------------------------atctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttc-atgataaaagtcttggaaagatcaggaattcaagg-ccatacctaaacatgataaaagcaatctacagcaaaacaatagccaacatcaaattaaatggtgagaagctggaaacaatcccactaaaatcagggactagaccaggctactcactttctccctacctattcaatatagtacttgaagtcctagccagagcaattcgacaacaaaaggagatcaaggggatacaaattagaaaggaagaagtcaaaatatcactttgtggatgatatgatagtatacataattgaccctaaaaattccaccagagaactcctaaacctgataaacaggttcaatgaagtagctggatataaa-attaactcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaacacc-cttcacaatagtcacaaataatataaaataccttggtgtgactctaactaaggaagtgaaagatctgtatgataagaa--cttcaagtctctgaagaaagaaattaaagaagttcccagaagatggaaagatctcccatgctcatggattggaaggatcaacattg-taaaaatggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaattcttcagcaaattagaaagagcaatttgcaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaatgataaaagaacc---tctggtggaattaccttgcctgacctaaagctgtactacagagcaattgtgataa----aaacggcatggtactggtatagtgacagacaagtagaccagtggaatagaattgaagacccagaaatgaacccacatacctatggtcacttgatctttgataagggagcaaaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcacaactggcggttatcatgtagaagaatatgaattgatccattcttatctccttgtactaaggtcaaatataagtggatcaaggaactccacataaaaccagaggcaccgaaacttatagagggccaagtgggaaaaagcctcgaagatatgggtacaggggaaaaaattcctgaatagaacagcaatggcttgtgctgtaagatcgagaatcaacaaatgggacctcataaaattgcaaagcttctgcaaggcaaaagacactgtcaatatgacaaataggccaccaacacattgagaaattatctttaccaatcctaaatcagatagggacaaatatccaatatatataaagaactcaagaaggtggactccagaaaatcaaataacccattaaaaaatggggtacacagctaaacaaagaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaaaatgttcagcatccttcatcaccagggaaatgtaaatcaaaacaaccctgagattccaactcacaccagttagaatggttaagatgaaatattcaggtgacagcagatgctggtgagtatgtggagaaagaggaacactcctc-cattgttggtgggattgcaagcttgtacaaccactctgga
s HiC_scaffold_1 202321554 3159 - 233722169 aaagacatACA--GACTGAAATGGAAAGTAttggaaattatatttcaaaCAAATGG----AAATCTAAAGCAGAAGTA----TACCTATATCTTATGAAGCAGACTTTAAGACAAAAACTATTAAGACAAAGTCATATATAAAGATCAAGG--GATCAGTTCA--------ACAGGTAGAT-------AGATGA--------TTGTAAATCTAGATGCATCTTATGTTGGAG-AACCTAATTTAT-AAGCAAACACTGCTAGatctaaagggaaaaatagattcTAATATAATAATAGCAGAGGACTTCAACATCCTACTCTTGATCAGTGGGCAGATCATTCTGACAAAAA-------GGGcaataaaacagttaaaaaaatttttatagattaaaTGAATTTAACAGATACTTGCAGAACATTTCATCCAACAGCTGAACAATATACGTTCTTTTCATCAGTGCACTGAACTTTCTCTAGA--TAGACAT---ACTGTCCATAAAACAGGgcttgacaaa-ataaaaaaattgaaataatatccTGTATCTTTTCTAATCACAATGGAA-----------GTCAATAACCAAAGAAGATTGTACAAA--------TTATGATACATGAACACTGAATAA----------------ATTTTGAACAAACAATACAACAATGAAatcaaatgtgaaatttaaaaatatgtcaa----aatgaagatgaaaacaCAATATGCCCAAACTTATGgaatacaataaaaacaatactagTAGGGAAGTGTTTGGCAGTAAGtgcctatattttttaaaaataaatttcaa-----atgaacCAG--------TAATGTATCTCAAGGATTTTGAAGGCAA-GAAgaaagt-----caaaag-----------agaaaaaaagaaagactagaacaaaaataaat--------------agggact-ttaaaagtataaattactAATGAAACAGTTGTGGTTTGTTTGAAATATAAACA------ACCAACTTTTAACTGAACTAATCGGAAAA-AAAGAGGTAAgatccaaataaataaaaccacagtTGAAAAGGGAGAGATTAAGACAAATcctacagaaatacaaagaattactAGGGATTTTTATTGAA----------AACCAAATTGGAAAAgctaatagaaatagaaaattttctggACATGTGAAACCTACCAAAAATGAAAGATGAGGACGTACAAAATCTTGAACCAGCCAATAACAAGTAATGAAATGGAATCAGTAACAAAGTAAGACTTATAGC---------------AAAAACTCAGACCTAAATGGCTTCACTAATGAATTTTACCAAACTTTTAAAGAA---CTAATGCCAGTTCCCCTCAAAAATTTCCAGACACACTAAAATGGAGGGAACCCTTccaaactcattcttggaggccaAGATTACCCTG----ttaaaaaacagagcaaacaaagagaaaactgtACTCCAGTATTGCCTGGtaaacacagaggcaaaaattctCCAAA------TACCAATCAAATTTCATAGCACATTAAAAATACCATTCACCATGATCAAGTTtgtttcatcccaggaatgcaagaatggcTTAATGTATAGAAATCAGTAATCATAATACATGGCATCAACAGAATGAGTGGTAAAAGATCATGATAccttagccaggcgtggtggctcatgcctgtaatcccaccactcaggaggctgaggtgggaggatcgttatGAGttagagaccaacctgggctacaaggtgagctcaaggccagtctgaactgcatagcgagaccccatctcaaaaaagaaaaaatttttaaaaattatggtacCTCTATTGACACAGAGAAAACACCTGATGAACTTCAACATTCCCTCAATGATAAAAGCTCCAAACAAATTGGGCATACAGGGACTGTACTTCAGCATACTAAAGAACATGTGTGAC----TCACAGACAACATCATACTGAGTGGGAGAAAGCTGGAAGCATTTCCTCTAAGatca-agacaaagacaaaatatcTAAGCTCACtgttcttattcaatatagtactagcacttttagccagagcaattatgtgaaggaaagaaataaaagacataaatattat--gGGAGGAAGT----ACAACAGTTTGTAGATGATTC-----TACATATAGAAAAACCTATAG-----ACCAACAGCCTATTAGAGCTGAT-----------ATTTAGTACCAAGACACAAatatcaacatataaaaatcattagttt--------atacagattaaattttctg----agaaatcagGAAAGCAATTCTACATTAAAATagctataaaagaataaaaatacttagaaa------taagcAGGGAAGTTTAATCCCtctataattaaaagtttttaaaatactgatgaaataa---aaaca-----caaaaagatggAAGGACCTTCCAAGTTTAtgaccagaaaaaa--aatgttgttttaaatGTCCATATTACCCAATATGATCtatacatttaatgcaatcccagtcaaaatgcTAATGAAATGcttcatagaactagaaaaaac--------aattcatgtGGAAGCTCAAAATACCCAGAATACAAAAATCT----TGAAGTGCAAAAGGGACAAAGCTGGAGGTAtcacaataccagatttcaaaaCATACAACAGAGCCATGGTGACCAAACCAAACGGTTT--Taatggcataaaaacagacatataaa-CAATGGAAGAGGATAGAGAACTCTGCAATCAAACCACACAACTACAATCAACTGATTCTTGACCAACACACTAAAAATTTACTGGGAACAAAAGACAGCAATTAC-----------------------------------TAAAAGA--------------------------------------------------------------------AAACCTAG-------GAAACATTTGAAGG------------AAACACTTTAAGATGTTGGTACAAGCAATAAAGTTCTGGGACAGGACC-CAACAGCACAGGAAGTGAAATCAAACATTTACCTTTCTCattacacaaattta-aaaacttctgaaTAGCAAAGGAAACGAACAGAAT--CAAAAaaataacctacagaatgggaggaAACAGTTGCCAATTGT---TCACCTCAGggttaatattca--gaatataatGAACTTAAAAA-----CTTTTTGACAGTCAAGCAGCCCAGTTAAAAACAGGCAAGTTGTTTGAATAgatatttcacaaaagaaaaata-caagtggccaacaagtatatg---aaaaaatgctaaaTATAATTAACCATCAGAGAAATGTAAACCAAATATAC---AAGATACTGTCTTACCCCAGttagaatgactattatcaaa-aataaaaaaatagtgacTCTtgatgaggatgtggagaaaaatgaATTCTTGGCACATTGCTGATGTGAATGTATATTAGTACAATTATCATGGA

a score=14842
s chr3            56609169 905 + 160039680 AGAGTGAAAGTCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAA-ATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAG--CACACAAGCACCTCACACAAA---AGTGGGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATAC--TCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAG--CAAATTCACA-CAAGAGGGGTAGACTGCAGG--AAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGA
s HiC_scaffold_1 182585348 832 - 233722169 aaaatcaaagaatggaaaatgattttatatgtcA-TGACCGGAAAGGAAAAG------Tagcaatcttatttttaaaca-----gaCTTCAAACTCAAACTGATCAGAAGCAGCAcaggaggtcactacatactggttaggaaaacaattcaacaggaagagataacaaatgtaaatatatatgcaccaactaccagtgcacccaactttataaaacaaacctGAATGGGcataaaagatcaaacaaacaTC-AACACAATTATAGTGTCAGACCTCAGTAcaccactgtcacaaacagattGA--CTAGAAA----AACTCAA--------------AGCTGATCAACATCGTTAGCCAAATAGACTTAATAAATATCTACAGAGCTGTCTATCCTAATACAAAAGAATATAA---CTTCTCAGCAGTATGTGAAACTtcctccaaaataaaccacat-cTAACCCATAAATCTTGCTTAAACAAAT-CAAGAGAATTAAAATTACCCCATATATACTATTAAATCATGAtgtaatgaaactagaaatcaatgacaaatgaAGCTACAGAAATTTTCCAAATATCTGtatattaaataatacactcctgaataCTCAGTGCGtcccagaagaaatcaaggaa-aaattaaa--------------cattgaa---------aCAATTTATCATCGGACCTGTGGGACACAGTGAGAGCA-----------GGAAGTTCCCTCC-----TGTTAAATCATAATTTAGATAAATTAGATA-----AGCCTTATGATGCACCTAACTGTCCTAGAAAAATGAACAGTTCAAACTCAAATCTGGTGAAAgaaatcatagaacaaattaataaaatcatataacaaattaataaaacagagaccaaagaa---atgcaaaga

a score=44948
s chr3           56609169 3365 + 160039680 [encoded data, 4297 characters]
s HiC_scaffold_1  6285603 4063 - 233722169 [encoded data, 4297 characters]

a score=24378
s chr3            56609169 1579 + 160039680 AGAGTGAAAGTCTGGAAAACAA-----TTTTCCAAGCAAATGG---TCTGAAGAAACAAGCTGGAGTAGCCATTCTAATATCGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAATCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCACACAAAAGTG------GGAGACTTTAACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATA------ATTGGTCACAAAACC-AGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATA-----GATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGAC--------TTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAA--GTCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACACAA-GAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTG-AGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCACTAGAGGACACAGGGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGAC-----ATAACAACAGGTCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCCTAAACCACAGAAAGACCCAACAA-----ACT-TCAGACCA-ATTTCCCTTATGAAAATCAATGCAAAAATACTCAATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtttaatatacagaaaaccaatagcgtaat
s HiC_scaffold_1 181954360 1526 - 233722169 AAGGTAAAgggctggaaaaagaaaagatacactaCACAAGTGGAAACTAAAAGCCAGCAGCAGGAAGAGCTAACCTCATAGCAGGTAAGGCAGACTTcaagt---aaaacatttaaatgagACAGAGGGTTACCGTAGACTGATAACATTATCAATGCACCAAGAAGATAGAACAATTTT----ATATATGTGCCAACCACAGGGCCACCCAAATATGTAAGCAAA----TATGAGAtctaaaaagagacagagagaccccAAAACAGTAATTGTTGAGGACTCCAGTGC-CCACTTCCTGTAATGAACAGAtcatccagacagaaaatcaacaaagaaacatctGTGTTGAATCACACTGTAGAATAAATGGACCTAACAGACATCTGCAGAACATTTTATCCAACAGCAGCAGAGTATACATTCTCATCAGCA---CGTGGAACATTCTAAAAGATAGATCATAAATAGAACTTTAATAAAAACACCAAGTCTCAATAAACGTGAAAAAACTGAAGTGCTATCATGTAACTTGTTAGATCA-CATGGA---------------AACAACTACAAATTCCTAGTAATTGAAAGTACGAATAcgtatggaaattgaataaca---tgtTCTATATGACCT----------ATGgataatttaagaaattaaaaattgaagaaatctctggaaagaaatgaaaatgtcagCATAACGTATCAAAACCTGTAGAACACAGCTAAAGCTGTACTGAGAGGAAAATTGGAAGCAGTAAAATCATTCATTATGAA---AAAAAGGTCTTAAATAAACAACCTTACAGAGCACCTGAAGGATTTAGAAAAGTACAAACCAGAAGTACAAAAGGATTAATAGAGGGAAGGTAATAATGAAGATCAAGGCAGAGATATAtgaaatcaaaactaaaaa-------caatgaaaagatcaGTGGTACAGA--GTTGTTGGTAAAGGATGagcaaaatagataaata--tagcTAGACT-GCTagccaagttaaaaaaaagatacaagt----aaAACCAGATATAAAAAGGGAGACTCTAAATGATGGTTAGCACAGAAGA----CAAA--GTCATAAGAACCTACTATAAAAAATTATGTGCTTAAATACTGGATAACCTGGCAGAACTGGCTAAATTCCTCAGTACATGCAACCTGTCAAAACtcaattaaa---taacaaaaaatgtaaacaaatgaaCAGTCTGTA----ATGAGATTAGT-----------------ccctcacattaaaaaaaaaagtttagaaactGCTGGTATTATTGCtaaattctaaaatatgttt----AAGAATTAATCCAAGTTCTTCTAAAACCcttctaaataaatgaaatggaagGAATTCTGCCAACTTCTTTTTATGAGGCCAACATTGTCCTTCcaccaaaaccaaacaatgatAAGACAAGGAGGACTGTGGGGCTATATCTCCCCGTGGGCCACAGAGGCAGAAATTATCAACAAAA---TACTAACAAACTCCAATAGCTCATGGAAAA---CATACATCATAATGAAGTGCAATTCATCCCAGAGAGACATGGAtggtttaaaatatgcaaatcaataaatgtaat

a score=14135
s chr3            56609214 911 + 160039680 AAACAAGCTGGAGTAGCCATTCTAATAT--CGAATAAAATCGGCTTCCAACCCAAAGTTATCAAAAAA--TCAAGGAGGGACACTTCATACTCATGAAAGGTAAAATCTTCCAAGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACACTTTAGTAAAGCTCAAAGCACACAAGCACCTCACACAAAAGTGGGAGACTTTAACACACCACT--TTCATCAAGGGACAGATCCTGGAAACAGAAACT-AAACAGGGACACACTGAAACTAACAG--AAGTTATG-----AAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAAT-----TGGTCACAAAACCA-GTCTCAA---------CAGATACAAAAATATTGAAATTGTCCCATGCATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAG--TCAGCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAACAAAAGGAAGCAAATTCACA--CAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGT--GGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAA
s HiC_scaffold_1 167009644 906 - 233722169 AAACAAGCAAGAGTAGGCTATCTTGTTTTTCAGATACAGCAAACTTTAAGCcagaactgatcagaagagatcAAG-ATGGCCATTACCTACTGGTAAAGGGAACAACTCAACAGGAAGacttaacaattttaaatatctatgcatTGAATGCTGGTACACCTAATTGCATAACACAAAAACTACTGGACTTAAAAAGACAGATGGACACAATACAAG-------GACTTCAGTGAGATACTAGCTCACAATGATATAGGTCACCTAAGcaaaaagtcaagaagagtcaagaaagaaatattagtCAAACTATACCACTGAACAAACTGGTTTAACAGATATCTACAG--TGTTTCATCAAATgacaacaaaataca--tttttctcaatAGTTCATGGAAAATTTCTCATAATAAACCATGTTTTGGCCATGGTTAATAGACCATGTTTTAGGTATgctctaaaatacaaaaa-attgaaacaatccCCTGCATACTATTAGATCAT-----AACAAAGCTAGAAATCAACATCCTAATAAGCCACAGAAACTACACAAACATAGATAGACTAAATGATATGTTATTGGATAATCAGTggatcagagaagaaataagcTAATAAA----AAAGTTCCTGGAATCAAATGACAATGGAATAACAATACACCCAAGTCTATGAAACACAATGAGAGCAGTTCTAAGAGTGAGGGTATTGACTATACCTGCACACATATAAAGAATAGAATGattccaaataaataacttaGTGATGTACCTCAAGTTCCAAGAAagacaagaa--caatccaaatctaaaattaataga----aagaaattataaagatcagagtggaaattaatgagattaggaaaaaaaaagaa----tcaatgaatc--cca------gatttggttctttgaaaggatggGGAAGGGGTATAAA

a score=4806
s chr3           56609402 254 + 160039680 AAAGCACACAAGCACCTCACACAAAAGTGGGAGACTTTA----ACACACCACTTTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGATCTAACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAA
s HiC_scaffold_1 65096689 254 - 233722169 aaaacacaaatacact----ACCGTAGTTGGAGTCTTCAGTATACCCACTGTTTCCAGAAATCAATAGATCAAGCAGGCAGAAAATTAGAAAGGAAATGGCTAACCTGAGCCCCACTATCAATCAACTTGATATATTTGACATTTATATAATATTCCATTCAACAACACTAGACTGAACATTCCTCTCAAGCTTACATGGAATATTCACCAAGACAGACCACGTTGTCACCCATAAAATACATTTGAACAAATTTAAA

a score=10388
s chr3            56609533 1311 + 160039680 ACAGACATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATAGTACCTTCTCCAAAATTGACCACATAATTGGTCACAAAACCAGTCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATC------CTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACAT-ACTCAAACTTATG-------------------GGACACAAT-GAAAACATTTCTAAGAGGAAAAGTCAGCTCCGAGTGCGTCCAAAAAGAA------ACTAGAG-AGAGCACACACTAGCAGCTTGACA---------ACACACCTAAAAGCTCTAGAACAAAAGGAAGC-AAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAG-----TGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAGACTCA-CTAGAGGACACAG-GGACAGTATCCTAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGGT---CCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGATATACTCAACAAAACTGAAAAACCTGGATGAAATGGACA------AATTTCTAGACAGATACCAGGTACCAAATTTAAATCAGGATCAGATTAATGATCTAAACAGTCCTATATCCCGTAAGATATAAAAGCAGTCATCAATAGTCTCCCAACCCCCCCCCCCAAAAAAAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCA----CA-ATTACTCTGATTCCTAA-----------------------------------------ACCACAGAAAGAC---CCAACAAACTTCAGACCAATTTCCCTTATG---------AAAATCAATGCAAAA--ATACTCAATAAAATTTTACTAACCGAATCCAAGAACACATCAaaacaatcatccatcctgaccaagtaggtttcattccagggatgcagggatggtt----taatat-------------acagaaaaccaatagcgtaattcact-------------------atataaacaaactcaaagacaaaaatcacatgatcatctcgttcgatgctgagaaagtatttgaaaaaatccaacaccccttcatgataaa
s HiC_scaffold_1 196917545 1338 - 233722169 ACGCACATTTATAGACCATTACACCCAGCAAGAGCAAAATGTATGCTCCTCTCAAGCATTCATAGAACCTTCTCAAAAATACACCATATGTTGGACCACAAAACAAATCCTAACaaatttaaaaggattaaaat-----catgcaaaaaaaagattttgaaacacAAGGGAATTAAGTTGGAagtcaacaacagaaagaaatttaagaaattcaCAGGTatacagaaatt----aacagaagCCCAAGTAAACAATGATTCAAAGAAGTAACCGTGA---AAATTAGAAAC------ACGTTcagatgaaatgaaaacacaacataaCTGAACCATATGTCAATGAATTAGATAAtttagatgaaataaaaaatatttctagaaagacatatttacttaaaatgactcaaaaatgaataaatgctcAGAGCAGGACTCGACCCAATAACCTAGTATTTCagagtaaagaattaaaaa---tagaataatagtGAGCTAAAGTAACATAAG---------CAAcagaaaagaactaaaaattatattgaaaatgacataaatttttaaaaataagagagaatatt-------------aaagaaaaagttgAATCTTTTAGACGAACCACAAAATTGACAATTTTTAAGCTAGATTTAGCTTGAGAACAAAGAAGACACAATTCAAGTTATTAAGATCAAGAATAACAAAGG----GTTATCATTGGTAAATTtgtagaaatagaagaaaagaacaga--atcCTATAAACCACCCTATTCCAGAAAATGAGACAAATTGGACAAAGTGGGAAATGATTAATTTC---ACAGACATTAG----------CAAATAGGGA--AATTCAGCAACCCAAAAAATGCCACATAC-----------AAAGCA-------------------------------------------AGACCCAGATGGCTCCATTGTTGAATTCTACCAAACACATAAaagacatttaatatttattctttaccAAC---TCACCAGAATAAAGTCAGAACA-ATTATTTCCAACCCCTCCTATGAGGCTAATAGCATATTCCTGTAATACTAAAAATCAGAGCACAGCATCATATGATGGATGCATTCGTTATGCATCACAGTGATACAATTTTACAAATGACAGGTCACTACCACTCGTGAGTGTAAGCAAAGTCTCAGCAAAAGGATAGCAAATCAGA---TACGtataaaatgcagaaatatat-aaaaagattatcCTACATGACCAAATGATATTTATGCTTGGAATACAAAGTTCACTGCACCAACATTAAAAATGTGGTaagaaaaaatcaatgaattctaTCATTCAACAACGAATCATAGAACAcattaacagaataaaagataaaa--cacagGAATATCTCAGTATACACAGCAAAAGCACTAGACAAGCTGC-GTTCTCTTTCATCACAAA

a score=7508
s chr3           56609677 432 + 160039680 ATCCTATCAGATCACCATGGAATAAGGCTGATCTTCAATAACAACATAGATCATAGAAAGCCAACATTCATGTGGAAACTGAACAACACTCTCCTCAGTGAGACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTTCACTGAAAATGAAGCCACAACATACTCAAACTTATGGGACACAATGAAAACATTTCTAAGAGGAAAAGTCA-GCTCCGAGTGCGTCCAAAAAGAAACTAGAGAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGC--TCTAGAACAAAAGGAAGCAAATTCACACAAGAGGGGTAGACTGCAGGAAATAATCAAACTTAAGGCTGAAATCAATCAAGTGGAAACAAGAAGAACTATTCAAAGAATCAACCAAAGGAGGAGCTTGTTCTTTGAGAAAAT
s HiC_scaffold_1 24186769 405 - 233722169 ATCCTAATGGGACAGTTTGGTATGAACTGGGTCTTAAAT-----------TGGTAGAAACTC--CATGTATTTGGAGACTAAATAACATGTTATTGAATAATCaataaatcacagaagaaatcagggaagaaataaaaagatttctaGAATCAAATTGCAATGGAAGCACAACATATCAAAGCCTGAGGGACATGATGGAAACATTTCTAAGGGGAAATGTCATAGATTAAATGCACACGTAAGAAG---AGAGTAATCTCAAATAAATAAC-TGAGAAAGGTCCTAGAAATAACCTAGAAAGATAAAGAGT-AATCCAAATCTGAAGGA--------AGGAATTTacaaagatcagagtggaaagtAATGAAGTTGAGACTAAAAA----ACACAAAGGACCAATGATGCAAAGAGCTGATTACTTGAAAGGAT

a score=4717
s chr3           56610406 157 + 160039680 CCCAAAAA--AAAAGCCCAGGACCAGGTAGATTTAGGGCAGTGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTTTTCAAACTATTTCACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCTGATTCC
s HiC_scaffold_1  1869309 159 - 233722169 CCCAAACATCAACACCACAGACTCAGACAGTTTTATAGACAACTTTTATGAAGGTTTCAAGGAACACAAAAGCCCTGTCTTACACAAACTGTTCCAAAGAATAGTAACAGAAGGAATTCTCCCAACCTCGTTTTATGAGGCTAGGATGACCTCGATTCC

a score=11186
s chr3            56691640 437 + 160039680 TATCTACATTT-TCCAATATACCCTTGCTAAGTAAAAATTACAGTAAAC-GTTGTTTCTTACCAAAC-ACTGTACTAAATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAACTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATA----------CAATAGAGGTAACCTCAAATAAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTG
s HiC_scaffold_1 119062942 415 - 233722169 tatctatgCATATCTATTTTATCTATGCATATTACAAACTGCAGGAAACTATTGTTTTGGATTAGGCTCCTGTAACAGGTTCCAAAAGATCAGA-CTAAAAATCAAG-TGCAGTTATCCATGCTACAACTCCACAAAACCAAACT---CATAACTGGTTATCTGACCTTCTCAGAAATCAGGA----------AAC----GCATTTCCCAAATAAGCTAGTTTCAATCTGCATGACAATGAAGTTTCCTCTGCTTTAATCCTTACATTCTTTAGCCTCACAAAAGTAAA--CACACAATCTGATGTTGACTAATcgattatatttctatttttctgtctct-tgctctCACCTTACAGAGAAAGTACCTTTGAAAAGCccctata--------ttttctttgtttctgctttcctCAACCCTTCTCTGC-----AAACCTACCTCTTctg

a score=12327
s chr3            56691664 504 + 160039680 TGCTAAGTAAAAATTACAGTAAAC-GTTGTTTCTTACCA-AACACTGTACTAAATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAA-CTAAACTGTGTATCTGACCTTCTGAGAAAATTGG-ATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTT----------------------------------ATACA---------ATAGAGGTA-----------------------------------------------ACCTCAAAT--------AAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttggact
s HiC_scaffold_1 112169708 576 - 233722169 TGCTAAATAAAATTTACAGGGGGCCATTGTTTAGAACCATCATCCTGCACTAGGTCCCAACAGATCAGAGT--ACAATCAGA-------CCCTAAAG---GGGCACATTGTCAGCAGGCTGAAATTAAGCTATTTATCTGgctttcaaaagaaatcagtgtTATGGAGAGAGCAGGTAAATTTTCCAAAAAGACCAGTTTCAATTACCATGATAATGAAGTTGCTTCTGCCTAAACCTCTCTagacatacacacgcacacatagacacacacagatacacacacacacacagagatacacacacacagatacacacacacacacgtacacacacaacCACTACCACCACAAAACTGGAAGAAATCTGAGATTAATTTATCAGTTACTTTTCTActattctgtctctctgtcc-tgcTTTACCAGTATAGTAACT--GAGATGACCA---------------ATCTGCTGTttgttcttttcagtttttctctgctCATAAAACCAATCTCTTCTGCTCAGTCCATTGGAATACTTACTGTATTTTATGAAATCAAGTGCTACCTGATTCTGAAATTGAAATTAAAGCAAATTAGGATCTTTAAATT

a score=11703
s chr3           56691707 463 + 160039680 TGTACTAAATC-CCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAACTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATAC-AATAGAGGTAACCTCAAATAAACTGTTGTTAAATAAGCAATCATTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCAT-----GGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttggactaa
s HiC_scaffold_1 93843869 405 - 233722169 TGGACTAGACCTCCAACAGAccaga-ctaaaaatcaaa-tggaGCCTCACATATTACAGTTCCATGTCACTAAACCAAGCTAAATTGT-TATCTGATCTTGCTAGAAATCAAGA----AGAGATGATAGCCGAATTTCCCAAACAGACCAGTTTCAGTCCGCAGGACCATAACATTCCCTCTGCTTCAAGCTCTACATAAACAATGGTAATCAGGAGTGAAC-----------AGGCCAATGCTTTCCTGCCCTTCTCTTTTCCCACTCCTGCCTTACAGAGAGAACAACGCTGAAATGACC----------------AAACCCTCTCTGC---------------TCTGT----------------TTCTACTCACCTCATCCTACTGAAACCCGTGTTCTACTTTATGGACTACAGGGTCATCGGATTCGAAAACTACAAAGAAAGCCAATTAAGATATTGAAACTAA

a score=13373
s chr3            56691714 452 + 160039680 AATCCCAACAGACTAGGGCCAAAAATCAAAATGGAGTCACTGAGGCTAAGGTTCCATGTCACCAAGATGAA-CTAAACTGTGTATCTGACCTTCTGAGAAAATTGGATTAGAGAGATAACAGCTGAATTTTGCAAACAGGCCAGTTTCAATTGTCAAGATAATGAAATTCCCTTTACTTTAATCCTTATACAATAGAG-GTAACCTCAAATAAACTGTTGTTAAATAAGCAATCA-TTTTCCTATTGTTCTGTTTCTCTGTCCCTTCTTTACAAAGAAAATAACTTTGCAATGACCCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCC-----CTTTTCTGTGTATAAAGCCAACCTCTT----CTGTTCAGCTCA--TGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttgga
s HiC_scaffold_1 111360969 438 - 233722169 AGCCCAAACACACCAGG-CTAGAAATAAACATGGAGGCACTTGGACTAAACTTTCAGGgcagcaaaacaaaactaagctGTTTATCTAACCTTCTCAGAAATTAGGAG-AAAGAGATAATAACCAAATGTCCTAAAATGGCCAGTTTCAGTCAACATGATAATAAAGCTTC-TCTGCTTTAATCCTTAACCCATAAAAAGTGGCCTGAAGTTAGC--------------CAATcagtttttctcttgttttgtctctgt---catgccctacaagaaaagTAACTCTGAAACAGCCAATCTACATTTTGTTC--------TTTGCATCTGTTTCCCTCCAGCCTTCCTTTCTATAAAACCAAATTCTTTTCTCTGCTCAGCCCACTTTGAAACACTACTTCTATTTTATGGAAGGAAGCGTTGCCTGATCCTAGAATTACAAATAATGCCAATTAAGATCTTTAAA

a score=6093
s chr3            56692006 166 + 160039680 CCTTCAGGGTTTCTTTTACCTCATTTCTGCTTGTGTTAGCCCTTTTCTGTGTATAAAGCCAACCTCTTCTGTTCAGCTCATGGGAACACAGATTCTATTTTACAAAATTAAGAATTGTCAGATTCTAGAATTGCAAAGGAAGCAAATTAAGATCAttggactaaat
s HiC_scaffold_1 148164944 164 - 233722169 CTCCCAGGATATGTTTGTTTATGTTTCCACCTTT-TTGGCCCTTTTCTGTCTGTATAACCAACTTGTTCTGCTTGGCTCATTGGAACAGTTATTCTATTTTGCAGAAAGAAGTGTTGCTCAGTTCTGGAAGtgaaaataaagccaattaaga-ctTTAAACTaagt

a score=7933
s chr3           57258414 139 + 160039680 ACTATACAGAAATTAACAAGCATACTGGACTAGAAACCTTAAACTTAATATTTGTCTGA--------GGGACACACATTGTATTAAATATGCAAGGTCTTATCTCTATAGGTTTGACTGTTGAAACTAATAAGTTATTCTCCAAATA
s HiC_scaffold_1 88714423 147 - 233722169 ATTGTACAGAAATGAACAGCCATATTGGTCTAGAAacattaaacttaatttttttccaattgtACAGGGGTAACACAGTGTATTAAATACGTAAGGTCTTATCTACATGGGTTTGATTACAGAAACTAATAAAgtattctctaaata

a score=11989
s chr3           57809670 353 + 160039680 CTAttttttcttttctttttttttcttcttttttttttttttGACTGA-----ACATGATTT---GGTAGTTTATAAGAGA------GCACCGTGGAAGCCCTGAGGAATGCAGGGCTCTCCACTTGTTCAGGGGACCATGGTTGGGGATATATTTGACCCCACAGTCATCAGGAATGAGC---------------------------CACTGGTATTAAACCTGTGGAAGCCTTACTTCTTTGAGATGTGGATCTTCTGATAACCAGGGAACTTGA----------------GCCTCAATCACATGTTCCTTATTCTGCAGCTTGGTCCAAGTGATGGTAGCCACTGTG---------------ATCCTGGTCACTGTGACCTGTGGCTTCCTGAAGGTGCCACACATACCTGTCTGGACCCTG
s HiC_scaffold_1 63148026 419 - 233722169 ctttcctttccttttctttttctttttcttttttttttttgaggggggcaGAGATAAGATTTATTGATGGCTTGCTGAGGACGGGCGGGGTAGTGGAAGCTTTCAGGAGTGCAAGGCCCACCACTCCTCCAGGAGATCGTGATTCGGGATGTATTTCACTTCTCAACCATCAGGAATGAGCGCTTATGGGCCCCCATATCTTCAAATTCGTCTGCCCTGAACTTGGTGAAACCCTGTTTCTCGGAGATGTAGGTCTTCTGGCGCCCAGACAACCTGAACTTGGCCCCGCCAGGGCCTCGATCACTTGCTCCTTGTTCTGCAGCTT------CATGAAGATAGACATGGTGAGCTGTCCAAGGTGAACCCTTGCCACTGTGCCCTGGGGCTTCCCAAAGGCACCCTGCATGCCAGTCTGGAGCCTG

a score=22816
s chr3            58017312 1556 + 160039680 aCCATCTCACTTGATGGTGAAAAAGTCTTTGACCAAATCCAATATCCCTTCATAATAAACATCTTGGAGAGATCAGGGACACAAGGGACACGTCTAAATATAATAGAGGCAATTTATAACAAGCCTATAGCCAACATCAAATGAAAAAGAGAGACACTCAAAGCAATTCCACTAAAACCAAGGACAAGACAAGGCTGATCTGTCTCT--CATATCTTTTCAATATAGTAGTTTAAGTTCTAttttaaaatattttttattacgtattttcctcaattacatttccaatgctatcccaaaagtcccccatacaccccccccccacttccctacccacccattcccactttttggccctggcgttcccctgacagcattggaaatgtaattgaggaaaatacgtaataaaaaaatattttaaaaaaaaGTTCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAA--AAAGGATACA---GTTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGA--AAGATTGAAGACAATGTCAGAAAATGGAAA-GATCTCCCATGCTCATGGATCAGTAGAATTCA--CAGTAAAAATGGCCATTCTACCAAAA--GCAATCTACAGTCAATGCAATTCCCATCAAGATTCCAA-CACAATT--------CTTGAAAGAACAATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAAT-TTATACAATGAAAGAACTCTGGAAGGTATTACCATCCTGATCTC--GAGTTGTAACAAT-AAAACTGCATGGTAGTGGCATAA------------AAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGA-----CACAAATCCATACACCTATGGACATCTA-ATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTC-TAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATC-ATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGA----TCAACAACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATTTGA
s HiC_scaffold_1 175177279 1369 - 233722169 atcatctcaatagatgcagaaaaaatactTGACAAAATCTAATATCCATTCATGACAAA----------ACACTAGGAATAAAATTTCTTCATCTCAACCTTGTGAAAGCTATTGATTACAAACCAGTGGCTAATATCACATTAAATGGAGAGAAGCTCAAAGCtatccctctaaaatcaggaacaaagtaAGGA-GGTCCACCACCACCACTTCTGTTTAATATAGT----------------------------------------TCTCCAACTAT-------------------------------------------------------------------------------------------------------------------------------------------------------TAGCTAGagcaataaaa----taagagaaagaagtaaGGGACCCATGGATAGGGAAGgaaaaacttaaattatcattatttcctaATGACATGATCCTCCAAATAGAAGACTCCAACAACTTCACCAGAAGACTCCTAGAACTAATATTCAAATTTGATTGTCTAACAGGATATGAAGTCAT----AGTCCCAAAATTAGTAGCATTCTTGTATACCAATAACAAACTCCCTGAAAGATAAATCAAGGAAACAACATCATTCACAATATcaccaaa----atgaaatactgaggaatTAATATaagcaaagaagtgaaagacttctataatggcaattatagtactctgaaaagtgAGATTAAACAgaatatcagaaaacagaaaggatatCC--TGTTCCTGGATAAGCAGAAGCAATTtagtcaaaatgaccacactACCAAGACTGTTACATAGATTTAGTGCAATCTCAATCATAATAGCAATCACATTCCTTCAGAACTTGAGAAAGCAATCCTGAAAGGCATATGgagcaagaaggaaaaaagaatagcaaaagtagtgttaagaaacaaaggcaaaataggaggcatcacaatcccaggcTTCAAAACTACattgataaaaacagcatgatatggacaaaaaacaaaacagagaaacagactcgtggatcaatggaacagagtagaagatacaGAAGTACCAGAAGTAACTCTAGGTATACTCAGCTATATTATTTGTGACAAAGGGGCCAATTCCTACACTg---caggaaagatagcctctttaacaaatgatgctgggaaaactggttattcaCCTGCTCAAGGCTGACCC-------TAGATCCATGTCCCTCACcgtgcattaaactaaaatcaaaatagatcaaagatatgaatgttagaacagaaac----aattttctagaagataaaata-gtaaAACTCATGATGGTATACTTGTAAACTAAGACTTTCTGGGCAAAACCCCAGTTACACAAAAAATAATACcaagagtcaacaaatgggatcacatcaaattaaaaaataactgcatagcaaagaaaactactaacagaatgaagagacaacctccagaatggaaaaaaaattgctaGCTACTCC-------TCAGAAgactaatgtctagaatatatgaagaactcaa

a score=6909
s chr3           58017325  907 + 160039680 ATGGTGAAAAAGTCTTTGACCAAATCCAATATCCCTTCATAATAAACATCTTGGAGAGATCAGGGACACAAGGGACACGTCTAAATATAATAGAGGCAATTTATAACAAGCCTATAGCCAACA----------------------------------TCAAA------------------------------TGAAAAAGAGAGACACTCAAA--------------------------------------------GCAATTCCACT--------------------AAAACCAAGGACAAGACAAGGCTGATCTGTCT------CTCATATCTTTTCAATATAGTAGTTTAAGTTCTAttttaaaatattttttattacgtattttcctcaattacatttccaa-tgctatcccaaaagtcccccatacac-----cccccccccacttc--------cctacccacccattcccactttttggccctgg---cgttcccctgacagcattggaaatgtaattgaggaaa----atacgtaataaa--aaaatatttt-----------------aaaaaaaaGT---------------------------------------TCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAAAAAGGATACAGTTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATC--AGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAG-ATTGAAGACAATGTCAG-AAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAAT--TCACAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAGAAC
s HiC_scaffold_1 80209278 1085 - 233722169 ATGCAGAAAAATTCTTTGACAAAACCTAATATCCACTTATGATAAAAACTTTGATGAAGATAAGTATAGAAAGATCTTATCTAAAATAGATAAAATCCACTTATGACACACCAATTACCAACATGATacttgttgtggtttgtgtctgaatgtcctcTCAAAGCTTCATGTGATTGTGGTGGGGGCACTTGTTGAAAAATgctga-atttagagtttgtgattggttcattgccttgggactggtggtgtgagtgctgcacttctCCTGGGATGCGTAGCTCGCAcccaatataagggagggaaagaggcttgctcctcctttttgctcctccctttttgctcttgttggttTTGGTATGTgcca------ctgccatgaactattaCCCTCTGCCATAAAGCTAACTGCCTTCGAGCCAGccaagtatgaactgaaacctccacaaactataagctaaataaatctttccttccctaatttggggtgttgggtattttgcctcagcaatgggagaaaagtaaccaaaacaatactacaagcaaaaaactaaaatcattccctctaaatcaggaacaagaaaaaagtgTCAATTTTTACCATTCTTGTTCAAGATAATACTAAGAatttagccagggcaatcagaaaagagaaacaaatgaaaggGATTCAATAATGAAGGGAGAAGTCAAACTATGTTTATTTACAAATAATATGACCCTTTGCGTGGAAGATCCTAAAACTTCTATCAGAAGATGCTAATaactaataagcaaattcagctaagtggcaggatacaaaataaac----acataaaattcgATAGCATTCCTGCATACCAAC---------------AATGAATTCATAGGAAAACAATGTCATTCacaacaactttttaaaaaat-gagtacttaggaattattctaacaaaggaagtagaaAC---------TAGagtgctc-------tgaaaaaagaaattgggaggacattagaaaaatagaaagacatccacTGTTTGTGGACAAGCAGGACTATTAGAGTCAACATGACCATATCATCAGAAATGatgtacagatttaatggaattccaatcaaaatactatcagcatttttcacagaac

a score=6706
s chr3           58017328 1404 + 160039680 GTGAAAAAGTCTTTGACCAAATCCAATATCCCTTCATAATAAACATCTTGGAGAGATCAGGGACACAAGGGACACGTCTAAATATAATAGAGGCAATTTATAACAAGCCTATAGCCAACATCAAATGAAAAAGAGAGACACTCAAAGCAATTCCACTAAAACCAAGGACAAGACAAGGCTGATCTGTCTCTCATATCTTTTCAATATAGTAGTTTAAGTTCTAttttaaaatattttttattacgtattttcctcaattacatttccaatgctatcccaaaagtcccccatacaccccccccccacttccctacccacccattcccactttttggccctggcgttcccctgacagcattggaaatgtaattgaggaaaatacgtaataaaaaaatattttaaaaaaaaGTTCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAAAAAGGATACAGTTA-AAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACT----CCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTA-AGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAGATT-----------GAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAGTCAATGCAATTCCCATCAAG------ATTCCAACACAATTCTTGAAAGAACAATACTCAAGTCCAAA---------CAGAAAA----------------ACAAAAACCTCAGTATAGCTGAAACAATTT----ATACAATGAAAGAACTCTG--GAAGGTATTACCATCCTGATCTCGAGTTGTAACAATAAAACTG---CATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGA---CATCTAATTTTTTATTAAAAGAAGTCAGAAATA--TCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTG-GTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGA----AGACAACTTCCTGAATAGAACATCAATTG------CACAGACTGTAAGATCAACAATTAATAAATGG
s HiC_scaffold_1 77103402 1182 - 233722169 GTAGAAAAGGCCTCAGTAAAATccaacatcctttcatgataagataCCTAGAGAAAATGCATACAGAATGAGCTTCCCTCAAATTGATAAAAGCCAATTG--ACAAACCAATACCCAACATCATACTGAAGAGAGAAAAATTGAGAGCATTTCTTCTAAAACCAAGAATGAGACAAGGTTG------------TTTGTTTTCACTAC-----------TTCTGT----------------TTATGTAATACTTGCAACTTCA--------GCCAGCTCAA-------TCAGac----------------------------------------------------------------------------------------------aagaaaacat------------------------------------------aagtaaaaGGGACacacataggaaaggaagaagtccaGTTATGGCTATT-GCGGATAATGTGATCCTTCACAtagaagattaaagaaaaaaaatccatcagaTGATTTTTAGATctgataagcaaattcagcaaagAGATAgggtaaaaa------ttaagaataaaaatcaacagCAATCATGTGCACCAATAATGAATCCACCCAAGGTGATATCatgaaaataattacattcataagatctttaaaaattaccAG-----------------TATATACAGGAATTGAAAGACTTCTATAGTAGGA----CAGGTGAAGGGGGAAAGGGTAGTTGGGAAAGGGACATAATGT---ATACTATTAGTATCTCTTA-GTTCATGAGTAAAGATGGTTcatgctaatattg--------attgaaaaaaattttatgcaCATATCATGTACCTTAAGCAACTAATTTAAAGATTACGTGTAATATATTAacaattattttcctattattttgttacaaaattttatttgatgttttccATAAAc------atatcttaaaaattttaaaaagaaaattacagaacactgaagaaagt--------------------ttaaaaagacaaaacagtatCATGGTaacagcagaaaaacagacccatgaaataatgaaatataacaGAAGATATATGAACAAACTCAGA-----ATGAAAGCCATTGGGTTTTTGACAAAGCGACGATGAACTTACTTCATGTAag------------gcctctttaacaaatggttctGAGAAAAATTGGATATT-ATATGCAGAATATTGAAAT-------TAGAGCCAT-TTTTTCAgcct-tattaaaattaaataaagtagaTCAAAGACCCCTGTATCAGACCAGACACTTTGACCCTG---GAAAGTATTATAGgcaa-------atattcaaagtcacagaCGTGAACAAACAACCTGAATGGAACCTTAAGcaactaataataaaaaataatatcaaaaacaaaTGGATGG

a score=18877
s chr3           58017733 1140 + 160039680 aaaGTTCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAAAAAGGATACAG-TTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGG-ATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAAC-------ATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAA-AGATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTAAAAATGGC----CATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGA---------AAGAACAATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAAT-TTATACAATGAAAGAACTCTGGAAGGTATTACCATCCTG----ATCTCGAGTTGTA-------------ACAAT-AAAACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTT----CAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTA-ATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACAACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATTTGAGACAC
s HiC_scaffold_1 69826095 1084 - 233722169 AAATTTTTAGCTAGCACAGTTAGgcaaaagaaagcaatgaaaggactacaaatgagaaaggaagaagtcaaagtaGCCTTGTTTATAGATGATATGACCATATATTTAAAAGGCCCTAAAGATTGCACCAACATACT-----ATTTAACAAA------------GCTGTGTGATGTAAAATATGCACT-------AAAAATCAATCACT--TCTCAGTGCA------------GTTAAgacagaaataggaaaaacaattCTATTCACAATAGCtttaaa----accaaaccaaccaaatctaggaatcaacctaacccaAGATGTGAAAAACCTCTACAATGAAAGCTTCAGAACACTTAAGAATAAACTGAAGAGCACATTAGAAAATG------------ATGTTCATGGGTTGAAAGAATT-------AATATGGCTATACATACTCCTAAAAATGATCTCCAGAACCCACCCATTCCCCACCAGAATAACAATGACATTCCTCacataactagaaaaaaaatcctaaaattcatatggaaacacagaagatccaGAATAGCCAAATCAATCTTAAGCAA--AAAGAGCAAGGGCTGGAGACATCATTATAGGctacttcaaattatactacaaaatcaaaataatgaaaacaacatGGCACTGTCACAAAAATAGACATGTTGACCAGCAGAACAGAATAAGTTGTGTGGAAACAAATCCACACAACTACAGCTATCCAATTCTGGACAAAAAG--GCCAAAAGGAT---ATGTTGGAGAAAGGAGAGCTTTTTAAACTAACAGATGGTGCT------------TGGAAACTTGTAGAAGATTGAAACG-------AGATTCCTATCTCTCACCCTCTGCAAAAATCAATTCAAGATGAAGCAAAGATCTAGGTATAAGAcctacaactttaaaaatattaaaagaaaacataggggAAAACTTGAAA--CATAGGCACAGGTAAATTCTTCTTGAACAGGAC--TCATAGCAtaggaaataaaatcaggaataaaaaatAGGGTTATCA--------AAAAGTTTCTACACAGCAAGTGAGCaatgaacaaaaggaagcaaCGGTTtgtggaatgggaaaaaat------ttttccttctgacaaaggattaatatctataatatataaagaactaaaaaaac

a score=14393
s chr3           58017734 1131 + 160039680 aaGTTCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAAAAAGGA-TACAG-TTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAA--GATTGAAGACAATGTCAGAAAATGGAAAGA------TCTCCCA-TGCTCATGGATCAGTAGAATT-CACAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAGAA----------CAATACTCAAGTCC---AAACAGAAAAACAAAA------ACCTCAGTATAGCTGAAACAATTTATACA-ATGAAAG-------------AACTCTGGAAGGTATTAC--------------------------------------------------CATCCTGATCTCGAGTTGTAACAATAA---------------------------------------------------AACTGCAT--------------------------------------------------GGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCT-AATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGA----AAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGAC-AACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATCA-TCAATAGGACAAAACGGCAGCCTACAGAAT--GGGAAAAGATCAACAACT-CCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATT
s HiC_scaffold_1 26289956 1279 - 233722169 aaatattagacaGAGCAAT----tggccaagagaaagaaataggaatTCAGATTAaaaagggagaagttaaatttTCCCTGTTTGCTGACAAAATAATCTTATGAACAGAAAACCCTGAAGACTTCACCAA-AAACTGTTAGAACCAATAAATGATTCCAGTAAAGTTGTAGGATATAAAATCAGCATACAAAAA----TCAGTGCCTTTGCTATACAACAATGAG---CtatctgaaagagaaataaagaaaataatctcatttaaaatagcttaaaccacaaaaaaatacttaggaatgtaTTTAGCCATAGAa-tgaaagatctata-----------------cactgaTGAAGTGAAttgaagaagacacaaataaatgaaaagactCAATTCTTCTACTGTTCATGAACTGGAAGAATTATACTGATAAAATGTCTGTACTACCCAA--CTATCTACAGAGGAAATATAATCCCTGTCAAATTTCCAATGTCATTCTTTATGGAAATAAGAAAGGTAATCCTCAAATTTGTAAAACCACTAAACATACTGAATCACCAAAGTActcctgagaaaatataaaaatctggaAGCATCACCCTGCatgacttcaaaatatattacaaaactatagcaaccaaactgggtgtggtggctcacgtctgtaatcccagcactctgaggctgaggcatgacaattattgagagttcaagaccagcctgggctgcaaagtgagctcaagtccagtctgaactgcatagcaagaccctgtctaaaaaaaaaaaaaactatagccACCAAAACATCCTGGTACTGGCATAAAAGCAAACACCTAGACCAAAAGAACGGAATGGACAGCCCAGAACTAAACCCAGGCATTTATGTTTGACTGATTTTCAAC--AATGTTGCCAAGAATACACAAAGGG--AAAAGACAGTCCTTCT--AGTAAATTGTGTTAG---AACAAGGTAATCATATGCAGAATGATGAAAT-------TAGACCCTTGTCTCACaatatacacaaaaatcaattctaAATACATTCAAGACTTAAACATAAAATCTAAAACTgtaaaactactagaagaaaacacaaggaGAACGCACCTATGA---CACTGGTCTGGGTGATGAATCTTTTAAACATGAACTCAAAAGCA-------TGAGA--AAAAACAGACAACTACTACCTCATCAAACCAAAAGGCTTCTGCATAACCAAGAAAACAGTCAACAGGgagaagagacagcctacagaataagagaaaatatttacaaataatacaTCCTTTAAGGCATTAGTATCCAGCATTTATTATGAACT

a score=16876
s chr3            58017737 991 + 160039680 TTCTAGGTAAAGCAATAAAACTGCTAAAGGAGATAAAAAGGATACA-GTTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAG--ATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACA--GTAAAAATGGCCATTCTACCAAAAGCAATCTACAG-------TCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAA-AGAACA-ATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATT-TATACAATGAAAGAACTCTGGAAGGTATTACCAT-CCTGATCTCGAGTTGTA----ACAATAA----AACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAA-TAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAA
s HiC_scaffold_1 105469028 946 - 233722169 TTCAAATCAGAGCAATCAggcatgagaaagaaataaaaggtacacATGTAGGAAAGTCAGAAATTAAACTATTTATGTTTGTAGATGATATGATTTTACACATATGAAATGCTAAAACCTTCACCAGAAGACTTTTAGAACTGATACATGgattcagcaaagtagcaggatataaaatcgaTATACAGAAATCAATAGGTt----ttctgtacaccaataatgagtTCTTTGAGAAGGAAATCTGGAGACCAATCTCATTCACAACAG-------------------------------CCAAACCGAGGATATGAAAGAGCTCCATAGTGAAAACTGTAA--CAtcgaagaaagaaattgaagaaggcACTAGCAGTTAGAAAGATCTCCCATGGTAATGGATTGGGAAAATTGATATTGCTAAAATGCCTGTACTACCCAAAGCAATCTATAGAGTGGATGCAACGCAATGCT-------GTTCTCACAGAACTAGGAAATAAAACAGATCCTCTAGTTCATATGGAAGCATAAATGATCCTGAATATTCAAAGTAATTATGAGTAAAAACAGCAATGCTGAAGATAACACAATATCTAATTTCAAAATGTACTACACAGCAATAGTAACAGCGTGGTATGttcacaaaaacagacatgtggaccAATGTGACAGAATAAAGGACC----CATGAATC---------ATCAAGAACTAATTTTCAAC--AATGATGTCCAAAGCATACATTGAAGAAAGGACATTT---TCTTCAACAAaaagtgctagaaaaattggaTATTCACAGGCAGAAGATTTA-------AAATAGATCCCtatattttgtgatttaaaaaaatcaatagaaagtGAATCTAAAATCTTAATGTGAGACTTAAAACTTTGAAATTACTag-agaaaacatacagaaaaccCTTCAAGATGTTGGTGCatgcaatgatttcttggatagGACTTTAATTgctaaagaaacaaaagcaagaattgaaaa

a score=18796
s chr3            58017745 1134 + 160039680 AAAGCAATAAAACTGCTAAAGGAGATAAAAAGGAT----ACAGTTAAAAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTC---TTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGA--AGAAAGATTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAAT--TCACAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAG-----TCA-----------------------------------------------------------ATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAGAAC---AATA-------CTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATTTATACAATGAAAGAACTCTGGA-----AGGTATTACCATCCTGATCTCGAGTTGTAACAATAAAACTG-CATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAG-ACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACAACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATTTGAGA--CACAtggct
s HiC_scaffold_1 150263194 1148 - 233722169 AGAACACTCAAGCAAGTGCAAGAAATATAAGGGATTTGAACAG---GAAATGAAGAATTCAAACTATTCTTCTTTGCCaatgacatgatcctttacatagaagacaccGAAAACCCCTCCAGAAGACTTTTTGAACTACTAGACAAATTTAGCAAAGCAGCAGAATAGAAAATCAGT----GAACAAAAGTCAAT-AATATTCTGTGCATCAATTTTGAattcaccaaaaaagaaagaaataaaataa--ttccaatcAACAGTAGCTTTAAA--ATGTTGCATACTTGGGAATGATCCTAA--------GTGAAAGACCTCTctaatgaaaattacagaattctaacaaaagagattgaagaagacattagaaaatggaaagatatcctgtgTTTCAGGATAGGcagaatgattatttttaaaatggttataTTACCAAAAATGATACATAGATTTATCATTATTAAAAATGATATAGATTTATAAAAATGATAtgtagatttatgatatatagATTatatgcaattctaatcaaaatgccaatagcattcttcaaagaactagaatagatcaattttaaatttatacagaGTCAAAGGAGacccagaatattaaaaaaaa---gcaaaacacaaaaatcctAGATTTCAAGATATAATA----------CAAAGTACAGTAGTAAAATCATCATGATATCAGGACAAAAATGTACATGTTGACTAATGGAACCAACCTGAGGTCAGAGCAACAAGTTTATACACCTTCAGAAGTCTGACTTTTTACT--AAGGGGCCAAAAAC-----AGGCTGCAGAAAAGATAttctctttaacaaatagtgcttGAAAAAATGTTTGTTCATGTG-------------CAC------------------ATCTttctatactaaaataaaaactgatcaaagaa-----ctgatataaaatcagaaacactGAGTCTGGTGTGACATGAAATAGGAAAAATtcctgaagacataggtataggcagatTCTTTCTGAG-AGAACattgaacagaaaaa---taaaaacaaacatcaatACATGGTACTACATAAAGTTAggaagcttctgcacagcaaaacacacaaccaacagagtgaggaGATGACATACAGAATGAAGGACAATTGCCAACTATTCCTCAGACCAACGACTAAcacctagaatatacaaagaactcaaaaattacaTGTCT

a score=11274
s chr3           58017788 866 + 160039680 AAAGGAAGAAGTGAAAGTATCTCTATTCAGGGGTGATATGATAGTATACATAAGCAACTCCAAAAATTCTACCAGGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTA----TCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTAC---AAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTCCTGTATGATAAAATTTTCAAGTCATTGAAGAAAGA--TTGAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCA----CAGTAAAAATGGCCATTCTACCAAAAGCAATCTACAG--TCAATGCAATTCCCATCAAGATTCCAACACAATTCT-------TGAAAGAAC-AATACTCAAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATTTATACAATGAA--AGAACTCTGGAAGG------TATTACCATCCTGATCTC----GAGTTGTAACAATAA-AACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAA-TATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTC-TAATAGACCAAACACTTTTACATAAAACCA--GACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTT
s HiC_scaffold_1 59786427 864 - 233722169 aaaggaagaggtaaaA------CTATTCATAAATAACATGATCTTAGAAGTAGAATGTTCTAAGGAATGTACCGAAAAACTACTGGAAATGATAAATGACTTTTGCACATTTGTAGGATACAAGATCAATGTGAAACATACTGT--ATTTCCAGGCTTTTGCAATGAACAGAAGAAATTT----AGAAAGCATTCAG----------TTTATTATAATATTTCcttcaaaaagaaggaaacactgtggaataaatttaaccaaggaagTATAGGAATTGTGCACTTAAAACTATAAAGCACTGCTGAAAGAAATGAGGGAGAATCTAATTAAATAGGCA----TCCCACACTCatagatta-taaaatttaatactgTTAGGGGGGGGAATACTTCCTACATTGATCTACAGACTCAATGCAACCCCTATGAAAATCTTAATAGACTTTTGCAGACATGGAGAAACTGATCCTATAATTCATGTGGAATCTCAGTGGACTCTGTAAAGCCAAAACACTCTtgataaagaagaagaaagtttGAAGGCTAACATTTTTCAACCTTAATGACCACAAAGGTACAGTAATCATGACAGTGTGGTGCTGGAATAAATACAGACATATAGAGGAATGGAAAGAAATGGGAAGTACAGAAGTAGAACCATATATTTGTGGTCAATTGATTTT---TTAACAGGGTTGTGAGGCTATTCAATGGGGAGAGAACATTC---TTTTCAATAACTGGTGCTTGAACAACTAGGTATCCACAAGCAAAAGAATTAACT-------TTGATCACTACCTTACActacatacaaaaattaactcaaaatgaattaaacGTCTCACTGTAAGACTAACACCATAAAAAACCC--TGGAAGAAAACTAAAGTATAAATCTT

a score=13598
s chr3           58017862 947 + 160039680 GGAAACTTCTACAGCTGATAAACTCCTCCAGCCAAATGTCTGGATACAAGATTAACTTAAAAAAAAAAATCAGTTGCTATCTTAAATACAAATGGGAAACTGGCTGAGAAAGAAATCAGGGAAACAACATTCTTTACAATAGGTACAAATAATATAAAACATCTTGGGCTAACTCTAACTAAGCAAGTGAAAGTC-CTGTATGATAAAATTTT--------CAAGTCATTGAAGAAAGATT---------------GAAGACAATGTCAGAAAATGGAAAGATCTCCCATGCTCATGGATCAGTAGAATTCACAGTA--AAAATGGCCATTCTACCAAAAGCAATCTACAGTCAATGCAATTCCCATCAAGATTCCAACACAATTCTTGAAAGAAC-------AATACTC---AAGTCCAAACAGAAAAACAAAAACCTCAGTATAGCTGAAACAATTT-ATACAATGAAAGAACTCTGGAAGGTATTACCATCCTGA-TCTCGAGTTGTA-------------ACAATAAAA-CTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAATAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAGACATC-ATCAATAGGACAAAACGGCAGCCTACAGAATGGGAA
s HiC_scaffold_1 15180026 939 - 233722169 gGGCACTCATACAACTAATAAAA-AATTCAGCAACTTTGCAAGatgcaaaatcaacacacaaaaaataa------gtgTTCCTGTACACTAATATATGACCtcc-----------------aaaaaaaattgtttcctat-----tcagaaaaattaaatttctagaattgac-----ctaagaaagtgaaaaaaactcTGTAATGAAATCTTTAGtgttccaaataaataaataaataaataaataaataaataagaggaagACATTAGAGAGTG-AAAGGTCATTTATTCTT---GATTTGCAGAACTGGTAGTGTCAAAATGATCATTGCATCAAAGTGA---CAGAATTAATGTAATGCCCACTAAAATGCTAACAGAATTCATCACAAAGCtacagaaaatacttttaaaatttatatggaaccagaagatactTAGAATAGGCAAAGGGATcccaagcaacaagagcaaagtagGTGGCATCACAACTCTGAATTTctagttatactacaaatctataGTAATAAAAGCAGCATAGCACTGGCATAAACATAGACTTTTTGACCAAAGTAATAGAATTGAGGATGTAGCTACAAATCCATATACCT-TCATCATCTAAGTTGTGCCGAAGTGA--TCAAAAA----ATATGCTAGAGAAAAGTTAGCTTCTTTATCAAAGGGTGATAGGAAAACTTGTTATTCATAGGCAGAAGAATAATTT-------TAGACAcatatctctcaccatgaagAACA------TAAAATTGACAGAAGGTtgagatataaaaacagaaatactgacTCTGCTGGACAACAAATTTGGTAAAACTGTTGAACACACAAGGATAAACAAGGTCTTTCTGAAAAGAGAACCCATTACACAAGAAATAATGcgaagaatcaatgaatggaaTTATATCACACTAAAATGCTTCTGTACAGCAGAGAAAACAAGCAATAGATTGAAAAGACTATctatggaaagaaaa

a score=6456
s chr3            58018340 525 + 160039680 AAAACTGCATGGTAGTGGCATAAAAACAGACATGTTGATCAATAGAATTGAATTGAAAACCCAGACACAAATCCATACACCTATGGACATCTAATTTTTTATTAAAAGAAGTCAGAAATATCAAATGAGTCAAAAAAAATTACATCTTCAACAAATGGTGCTGGTCTAACTAGATGTTGATATGTGAAAAAAAAAAACACACAAATAGACCCATACCAATCACCCTGTACAAAACTCAAGTCTAAT----AGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTA-ATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCAC-AGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCA-AAGACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGATCAACAACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATT
s HiC_scaffold_1 114158867 477 - 233722169 AAAACAGTATGGCACTAGCACTAAAGCAAACATACAGACTAATAGGACTGAACAGACAGCCCAGAAATAAATCCTTAGGCATATGGTCAAGTGATTTT---GGCAAGGATGCCAAAACCAATCAATGG---AGAAAAAGCAGTCTTTTCAACAAACGACATTGGGAGAAATGAATACTCACAGGCAAAAGAATTG-------AGGTAGACCC-------TTACCTTAAACAAGAATCAAAACTTACCTCAGaattaaagac--ctaaataa--------atgtaaGAGCTAAAAGAAATGGGAAACCCTACATGATTTTGGAT---TGAGCAATGATAACA------TGTATATACCATTAAAAGCATAaaacaacagaagcaaaaatagaca------acatcatcaaagtttaaaaattttgcacATCATACAACATTATCAGTAAG-TAAAAAGGCAGCATATGAAatgaggagaaa--aatattttaaaatc-------ctgttAATATCTGGAATGTATGAAGAACT

a score=8337
s chr3            58018557 313 + 160039680 AATCACCCTGTACAAAACTCAAGTCTAA-TAGACCAAACACTTTTACATAAAACCAGACATACTGAACCTGATAGAAGAGAAAAGAGGTAATAGTTTTGAATGCATTGCCACAGAAGACAACTTCCTGAATAGAACATCAATTGCACAGACTGTAAGATCAACAATTAATAAATGGTACCTCATGGACCTGAAAAGCTTCTGTAGAGCAAAG-ACATCATCAATAGGACAAAACGGCAGCCTACAGAATGGGAAAAGA--TCAACAACTCCACATTGGACAGACGACTAATATACAAAATCTATAAAGAATTTGAGA
s HiC_scaffold_1 152164540 309 - 233722169 aatCACCATGCATTCAACTAAAACCGAAATGGATCAAACACCTAAATATTAAATCTGAAACACTAAACCTGGTGGAAGAAAGAATAGGCGGCACTTGTGAGGTCATTGCTATAGAccaagatttcatgaacaaaaacctaATCACAcaggcaatgagaaaaa-----agtaagtgGGATATCATTCTATTAAAAGGCCTTTGCATatcaaaacaaatcaccaacagaatgaaaagataatacACAGAGTGGGGAAAACTTTCAGCTAGTTCTtctt---caaaggacttatatctggaacatataaagaactgaaaa

a score=4973
s chr3           58132584 139 + 160039680 GGAGACCAGGATGCGCTACCCTAAAATATACTTCTGTGGTGTATTTTCAGATGATTATTCTAAGAAACTACAGA--CAAAGGCAGCTCTAAAAAGATAGCCT-TTGTAAAAGA-ATTTACACTTACAAAGACAGCTAA-ATTAA
s HiC_scaffold_1 30612358 144 - 233722169 GGAAACCAAAATCTGCCACTCGAAAATATACTTCTTTGGCATATTTCAAGATGGCTATCCAGAGAAACTGTAGGTTCTGGAATAATTCTAAAGAGTTCCCCTGTTGTCAAAGAGATTTACAACTATAAAGGAAATTGACATTAA

a score=3688
s chr3            58177781 224 + 160039680 TGTAATGTATTTTGTGAAATACTGCTGTATGAGATAAAATAAGTTAATATTAGCTATTAAGCTCAGGATTAAAAAAAAAAAACTGTGACTGCCAATGCTCA---GCGATTGAACAAAAGCAGCCAATAAATTACAACCAATAAAGTAGCTTGTGAATGTATGGTTATTCAATAAGTTCTGGCATTTTGGAAAGACACAAATATGT-CACTCTATTTCTGTCATAGCAC
s HiC_scaffold_1 197683733 197 - 233722169 TGTAATGTGTAATGTGTGACATCAGTGTTACAGACATTAGGAGTTAA-------------------GATTGAAATGAAAGAACCTGGGGTGGCCAGGCTCACTAGCTACTGAATTAA------CCTTGGATACCTGCTC------TGGCTTCTGAATTTATGGTTATTCAATAAATTCTGGCATTGAATGAAGAAATAGATATATCCATTCTTTGTTGCTTACAACAC

a score=11742
s chr3           58404676 500 + 160039680 CTTTGCTTCCAGACCTCTGCCATCATGGGTCACATGCATGCTCCCCAGGGCCAGTCCCAGT---TGGC---CAGCCATATCATCCCCACATGGCTCAAGATGACGTCTGACAATGTGAAGGGACAGATTTACAAACTGGCCAAGAAAGGCCTGACTCCCTTCCAGATAGCTGTGATCCTGAGGGACTCACATGGTG--GCACAGGTCTGTTTTGTGACTAGAAATAAAATCTTGAGAACCCTTACATGCAAAGGCCTTGCCCCT------CCCAGGGGATCTCTACCATTTGATTTAAGAAAGGAGTTGCTG--------------------------------------------------------------TCTGAAAG-----------------------------CACCTTGAGAGAAATAGAAAGGATAAGGATGCCTGATTCTGATAGAT--------AACAGAATTTACCAGTTGGCTTTATACTACAG---------TGCTCCCACCCAGTTGGAAATATGAGTTGTACACAGCCTCTGCTCTGGTGGCATAAATGCTGTTGTGTACACAAACAATAAAATCACTTTGAGTAAATTgaaagaaagaaagaaa
s HiC_scaffold_1 13364391 585 - 233722169 CTTTGCTTCCAAACCACCACCAGCATGCGT-------------------GTCTGTCCCTGCACATTGCATACAGCCACAGTGGCCCC-CTTGACCGAAGCTGACCTCAGAGGACATGGAG------ATTTACAAAGTGGCCAAGAAAGGACTGACTCCCTCACTTATCACTGTGACCACAAGAGACTC-CATGGTGTTACACAAACACATTTTGTGACAGGTACTATAATCTGGAGAATCCTAAAGCCTAAAGGACTCACTCCTGATCTCCCTGAGGGATCTCTATCACTTAA-CTAAGAAAGTAGTTGCTGAGGCCGGGtacatagttcagtggcacagtgcctgcctggcaagcacaaggttgattcctggtactgaaagaaaaaacaaaaagaaagcagctGTTGTTCCATCTTGAGAGGAACAGAAAGGATCAGGAAGACAAGTTCTCTCTGACCTTCATCAAGCCAGATTCACCA-TCAACTTGATATTATAGAACCAAGCAGGCTCTC-CCCAGCAGGAA----GAGTCATCCACAGCCTCCATCCTGGTGGCATGAATTTGTTTATGTACTCAAGCAATAGGGTCA---tgatttaacttaaaaaaaaaaaaaaa

a score=14091
s chr3           58404683 501 + 160039680 TCCAGACCTCTGCCATCATGGGTCACATGCATGCTCCC---CAGGGCCAGTCCCAGTTGGC-CAGCC-------ATATCATCCCCACATGGCTCAAGATGACGTCTGACAATGTGAAGGGACAGATTTACAAACTGGCCAAGAAAGGCCTGACTCCCTTCCAGATAGCTGTGATCCTGAGGGACTCACATGGTGGCACAGGTCTGTTTTGTGACTAGAAATAAAATCTTGAGAACCCTTACATGCAAAGGCCTTGCCCCT-----CCCAGGGGATCTCTACCATTTGATTTAAGAAAGGAGTTGCTGTCTGAAAGCACCTTGAGAGAAATAGAAAGGATAAGGATGCCTGATTCTGATAGATAACAGAATTTACCAGTTGGCTTTATACTA---------CAGTG----CTCCCACCCAGTTGGAAATATGAGTTGTACACAGCCTCTGCTCTGGTGGCATAAATGCTGTTGTGTACACAAACAATAAAATCACTTTGAGTAAATTgaaagaaagaaagaaa---------gaaagaaa
s HiC_scaffold_1 71518201 503 - 233722169 tcCAAATGGCCACCATCA-GGTTCCCATGAATGCTCCAGAGAAGGGCCTGTTTCATTTGGCTCAGCCTATTACTGCAGCATTCCCACTTGGCT---GCAGACCTAGGAAGATGTACAGCAACAGATTTACAAACTG-CCAAAAAGGGCCCGACTCCCTCACAATCTGATGTGATCCT-AGGAATTCA------------------TTTAGTGATAAGCAATAAAATCTTGAGAATACTTAAGCCCAAAGGATTTACTCCTGATCTTCCTAAGAATCTCTACAATTTAATT-AAGAAACG---TGCTGCTCAAAAGCATAGTGAGAGTAACAAAAAAGTTAAGGATG----GTTCTGACAGAT--CTGAAGTCACCAAATGTCTCCACACTATACGATCAACAGGGTCCTCCCCCACTCAGCTAGAAACACAAACCATCTACAACTTTTTTCCTGGTAGCATAAATCTGTTTATGTCCTCAAGCAATGAAATCACTattaaacaat--aaacaaataaatacattcagatttgaaagaaa

a score=11227
s chr3            58461435 289 + 160039680 ACAAAAATGAAGTGAGCCATCTTTTGTTCATTTAAAATGGTGTTTTGAATTTCATATGCAGAAAACGTTTTGTTACATTGCAGATTTTAATGTATTTAATAAATGCAACATGCAGATTAAGTGCAGTGTATACTGAGTATTTAAATTAAAATGTACATTTCATAAATACAGTTTCAAGAGAAAGCATCATTTTGTGTATACTAACACATTAAGTGTATGTCAGAAATTGATGTAAAATATATATTTTAACACATTTTCTGAAATTAAACTACAGTTTTGTTCAAATATT
s HiC_scaffold_1 143835881 255 - 233722169 ACAAAAATGAATACAGCT------------CTTAAGATGATGTTTTGAATTATATATGTACAACATGTTTTATTATACCATAGATA-----GAATTCAAT-----CAGCATACAGATTAAGTgctgtatactttaaatatttaaattacaatGTACTTTTCATTAATGCAGTTTCAAAACAAAGTGTCGCTTTGTATGTAATAGCACACTGAATGTTTACCAGAAACTGATATACAA-----ACATTAACACATTTTATGAAATt-------agttttcttgaaaaatt

a score=3522
s chr3           58636162 77 + 160039680 GTTCTCCAAGGGAAATTTTGTCCCCAGGGAACATTTGGTGAGGGGCAGAAACAGGGTGGTTGTCACAGGTGTGTGTG
s HiC_scaffold_1 48291463 77 - 233722169 GCTCAACCAGGGAAGATTTGTCCCCCGGTGACACTTGGTGATGTCTGGAGACATGGTGGTTGTCACAGCTTGGGGTG

a score=10477
s chr3           58652006 223 + 160039680 CGCAGCCTGA-------CACGGTCCCTCAGTCTCCTGTGGTTGCCTCCCC-------------------------AGTATGGCAGCAGCAAGACACAGCATGCTAGACTTCACGCTGGGTGCCAAAGCTGATGGTGAGGCCATTCTGAAAGGCCTTCAGTCCAGTTTTTTCAGGAGCAGGGGATGACAGAGTCAGTGCACACCTGGCAGGACCATGGATATTTAGCAACTTACACGAACAAGAATGGCAGCTTTG
s HiC_scaffold_1 51264691 247 - 233722169 CACAGCCTGATTTACTTCATGGCCTC-CAGTCTCCTGCGGTTGCCTCCCCCCAGCATGGCACAGGGCCTTGCTTCACTATAGCAGCAGCATGTCACAGCACATGTGATTTCATGATAGGCCCCAAAGCTGATGGCGAGACCATTCTAAAAGGTCCACAGTTCA--TTTTCCAGGAGCAGAACATGGCGGAGTTGGTGCATATCTGGCAGGACCATGACTACCTAGCAACCTACACAACC-----TAGCAACCTTG

a score=5322
s chr3            58769778 305 + 160039680 ttcttgacgttgtttctgtttagccaccgtggcaagataa------agAGTAAATGCAAGCATTTTTATTTGTCTCGCGGTTCTGAAG------GACTGGAGGACTA-ATCTAGTGATGGT---CTTGCTGGCAGAGTCCCGAGGCTGTGCAGGGCTTCACATGCCAAGGGACAGGGAG--TGCCCA------------TGTCCTGGCCTATCTCTCTTCTATAAATCCACCATCCTGGGTGCTCTACCATTATCCTAGTTAATCTTCCCCAAAGCCCTACCTGTAAGCACCGCAGTTGGGTTGA-GTGCCACCCTCTTACTTCTTCACACTGAGG
s HiC_scaffold_1 113472876 315 - 233722169 TTTTTTACATCATTTC-ATTTTGCTA-----GTAAGATAATACCACAGaccaaag--aaagatttatttttgactTACAGTTCTGGAGCTCCCAAGTTGAGGGGCTGTGTCTGGTGACAACTTCCTTGCTGGCAGAATTCCATTGTGGTGCAGGGCATCACATGGCAAGAGTCAGGGAGGCTGCACATCTGCACATGtgtgttttggtctttctgaCAT-TAGAAATCACCT--------TGACCTTCTCTAATCC----TAATCACTTCTAAAAGCCCACCCATATCCAGTATAGTTGGAATAATTTTTCGCTCTCATAATTCCTCACAGTGGGG

a score=3870
s chr3            58769837 106 + 160039680 TTATTTGTCTCGCGGTTCTGAAGGACTG-------GAGGACTAATCTAGTGATGGTCTTGCTGGCAGAGTCCCGAGGCTGTGCAGGGCTTCACATGCCAAGGGACAGGGAGTG
s HiC_scaffold_1 155986342 113 - 233722169 TTTTTTTCCTCCTGGTGCTGAAAGTTCGAGGTCATGAGGCTGCATGAGGTAATGGCCTTTTTGGCAGAGCTGCAAAGTGGTGTAGGGCATCACATGGCAAGTGACAGTGAGTG

a score=4065
s chr3            58769844 137 + 160039680 TCTCGCGGTTCTGAAGGACTGGAGGACTA-ATCTAGTGATGGT---CTTGCTGGCAGAGTCCCGAGGCTGTGCAGGGCTTCACATGCCAAGGGACAGGG-------AGTGCCCATGTC--CTGGCCTATCTCT---CTTCTATAAATCCACCA
s HiC_scaffold_1 199559313 150 - 233722169 TCTGGAGGTTC---AAGATCAAAGACCTAGATCTGGTAATGGTTTTCTTGCTTGCAGAGTTCTGAGGTGGCACAGAACTTCATGTGGCAAGAGACAGGGACTATTAAGTGTTTGTCTCTTCTAGACACTCTCCTTATTCTTATAAAGCCACCA

a score=4444
s chr3            59068430 137 + 160039680 CAACAA-AGGGACACCTCCCATGT--AGGAGTCAT--GTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCAC--AGAGTACACTTGTTATAAATGCAAATGGTATAG
s HiC_scaffold_1 157979310 143 - 233722169 CAACAATAGGCATATTGCCCATGCTCAGCAAACACTAGCAGTTGTGGTCAGTGGGGATGTGTTCTGAGAAACGAACTGTTAGGCGATTTTTTCATTGTGCAAACATCATGGAGAGTACGCTTG-CACAAACCTAGATGATATAG

a score=3959
s chr3            59068455 107 + 160039680 GAGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACTTGT--TATAAATGCAAATGG
s HiC_scaffold_1 230894968 107 - 233722169 GAGTCATGTGTCACTTAATGACGGGGATATACTCTGATGAATGTGTTGCTAGGTATTTTCATCATTATGCATGCAT--CAGAGTACAGTAGTCACACAAATTAAGATGG

a score=3683
s chr3            59068456 107 + 160039680 AGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACTTGTTATAAATGCAAATGGT
s HiC_scaffold_1 167441815 106 - 233722169 AGTCATGCATGGCTTAATGACAGGGATATATACAGAGAAATGTGCCACAAGGTAGTTTCATCACTGTATGAACATCACAGCATGCATTTA-TATGAACCTAGAAGGT

a score=4731
s chr3           59068456 89 + 160039680 AGTCATGTGATGGTGAACAACAGGGATGCATGCTGGGAAACAGGTTGCTAGGTGATTTTATCATTCTACAAGCATCACAGAGTACACTT
s HiC_scaffold_1 23647573 89 - 233722169 AGTCATGTGTCACCTAAAGACAGGGAGGTGTTCTGGGAAATATGTTGTTGGGCAATTTTGTCATTGTTCAAACATCACAGAGTATACTT

a score=8052
s chr3            60460558 334 + 160039680 GTGTCTTCTAATATAGAAATAACAACTTTTTTCCTTATTGGACATCTGAAGGCAAATGGGCTCACCACCATCTTTTTCTGGAATCAAAACAAAGATGTTTGCCAAGGGTTTTTGATCATGATATGTCTACTCCAACCTCCATGGTCTGATCTGGGGGTAAGGTCTGAACTTGTGCTGTCATTGTTTCTGGCAATATACAGAGGACATGGGCTTCAGTAAGTTGGGCTAAAAGAT----CTTGGATTGATTATTCAAGACTGTATCACCCAGTGAAATTAATCATGTTAACCTTTCACATAAAAAAATTTTTAAAAACTTAAGACCTTCAAAAATAAAA
s HiC_scaffold_1 119172925 327 - 233722169 GTGTGATATAAAATCAAGATAA--GCTTTTTGCCTCCTTGGGCCTCTGGAAGCAACTTGGGTCACCAGTGGCTCTC-CTGGAGCCGCC-CACGGAAATGAGGCCAGGGATCTCACTCCTTCCAAGTGTGATCAAAACCACATGGTATGACCTGAAA-TAGGGCTTGAACACGTGTTTCCAGTGTTTCCATCAGTATGCAAAGGACATCAGCTTCAACAAGTTGGATTAAGTAATCTTCCTTCAATGGATTATCCAGGACATTG--ACTCAATGAAAGAGACAATGCTAGTTCtttgtacataaaa----taaaaaatttgaaagcttTCAAAAAAAGA

a score=4916
s chr3            60460682 99 + 160039680 GTCTACTCCAACCTCCATGGTCTGATCTGGGGGTAAGGTCTGAACTTGTGCTGTCATTGTTTCTGGCAATATACAGAGGACATGGGCTTCAGTAAGTTG
s HiC_scaffold_1 203253609 99 - 233722169 GTTTGCTCAAACCGACACGGTCTGATTCGAAAATACGGTCTGAACATGTGCCGCCAGTGTTTCCGCCAGTACGCGAAGGATATCGGCTTCATCAAGGTG

a score=16838
s chr3            60860295 414 + 160039680 tttctttctttctttctttctttctttctttctttcttCTCATTAAACTTGTTTTAATGG-TCTCAAAATTCTATGACAGATTTTTGGTCAAGTTGTTTCCATTAAAAAGTACTGATTTTGAAAACTAACAA-CTTAAAACAGCcacacacacacacacacacacacacacacacacacacacacacacacaca---AATGGTCCACAAAACATTCT---TTCCTTCTGAAGGTTTTACGATGCATTGTTATCATTAACCAGTCTTTTACTATTAAATTTAAATGGCCAATTGAGACAAACAGTTCTGAGACCCTTCTTCCACCACTGATTAACACTGGGGTGGCAGGTGTTAGGGGTAATATTCATTTAGCCTTCTGAGCTTTCTGGGCAGACTTGGTGAC--TGCCAGTTCCAGCAGCCTTC
s HiC_scaffold_1 211032917 375 - 233722169 TTACTTTATCACTCATTTTCTCTAACAtttctacttttctctttaaa-------taatggGTCTCAAAATACTGTGATGGAGTTT-GGTCAA-TTGTTTCCATTAAA--GCTGTTACTTTTAAAACCAATAATCTAAaaactaccacacacacacacacacacacacacacacacacacacacgcacacacacacacaatgacccACAAAAGTTTCTCCTTTGGTCCTAAAAGTTTTATGATACAT--------------------------------------GGCCAATTGAGAGAAACAGGTATGAGACTGGTCTCCTGCTGCTGATTAAGAATGGTGTGAAAGGTGTTAGAGATAATATTCATTTAGCCTTCTGAGTTTCCTCGGCAGAAGTGGTGACCTTGCCAGCTCCAGCAGCCTTC

a score=4641
s chr3            60860319 110 + 160039680 tttctttctttcttC-TCATTAAACTTGTTTTAA--TGGTCTCAAAATTCTATGACAGATTTTTGGTCAAGTTGTTTCCATTAAAAAGTACTGATTTTGAAAACTAACAACTT
s HiC_scaffold_1 137530030 107 - 233722169 tttctttcttttttcctcattaaaTGGAATCCAAATGGGTTTCAAATTTCTGTGACAGAATTTTGGTCAAGATATTTCCATCAAAGA------ATTTAAGAAACTAGTAATTT

a score=7861
s chr3            60860327 197 + 160039680 tttcttCTCATTAAACTTG-TTTTAATG-GTCTCAAAATTCTATGACAGATTTTTGGTCAAGTTGTTTCCATTAAAAAGTACTGATTTTGAAAACTAACAACTTAAAACAGCcacacacacacacacacacacacacacacacacacacacacacacacacaAATGGTCCACAAAACATTCTTTCCTTCTGAAGGTTTT
s HiC_scaffold_1 209117791 162 - 233722169 ttttttctcattaagctTTCTTTTAATGAGTCTCATAATTTTGTGA--GATTTTTGGTCAAGTTATTTCCATTAAAAAGTATTGATTTGAAAAAGTAAC--TTAGAAACTTtc---------------------------------catatatacacatacaaatggTCCAAAAAGCATTCTTTtcttctgaagttttt

a score=10012
s chr3           60860337 263 + 160039680 TTAAACTTGTTTTAATG-GTCTCAAAATTCTATGACAGATTTTTGGTCAAGTTGTTTCCATTAAAAAGTACTGATTTTGAAAACTAACAACTTAAAACAGCcacacacacacacacacacacacacacacacacacacacacacacacacaAATGGTCCACAAAACATTCT---TTCCTTCTGAAGGTTTTACGATGCATTGTTATCATTAACCAGTCTTTTACTATTAAATTTAAATGGCCAATTGAGACAAACAGTTCTGAGACC
s HiC_scaffold_1 69375399 221 - 233722169 tTAAACTT----CAATGAGTCTCaaaattctgagacagagttttggTCAATTTGTTCTTACTAAaaagtactgattttaaaaac-agtaacttaaaaca----------------------------------------cacacaaagccccattgtctataaaattttctcctttccttctgaaCAATTTATGATA-ACACTTATCAATAACTAGTCTTTTACTATTAAACTTAAGTGGCCAACTGAGACAAACAGTGTTCAGATC

a score=4383
s chr3            60860507 59 + 160039680 TTCCTTCTGAAGGTTTTACGATGCATTGTTATCATTAACCAGTCTTTTACTATTAAATT
s HiC_scaffold_1 209141259 59 - 233722169 TCTCTTCTGAAGTTTTTATGAGGCATTGTTATCATTAACCAGTCTTtcactattaattt

a score=22422
s chr3           61198950 539 + 160039680 tggtcAGCAAATGTCAAATTCACATCTGAAAGTACGAATTTGCTGAAAAAGTTCAAATGTGAAGCAGAGTTATAATAAAGTAAAGACATAGCCAGGAGCACCATAGGTAGCCAATGACCAAAAGGCAAGTCTGATG-----ATCAGATACCCAGGGCATTAACCAAGATTCCAGGAGTTACCAACAGCTTTAGGGAATCCTAAGACTGAACAGCTGAAGATATATTTGCTTTAGATAACCCAAAGGGGCCAGCTGAGGAAGAAAGCAAAATAGCAAGGCTTTACTGGGTATTGAGAGCTGGGTGGGG--GAATGCACTGGTTGTAATTATTCTTCTCATCTCATAATCTCCCTTTGGAAAACATTGCATGCTTCCTCCTCCCATACACTCACTGGCACTGAGGATGCTGACAGTCCCTTGGCATCTGGAGCTGAGAGCTAGAGATGGGGATATATCTTCCCCACCACAGTC---ACTTCCCACAAGTTTCTTTTTCATCCAGACAGCCTTGGGAGCTTGCAGTCCCCAGAGAAATTTGGCCGTGATcct
s HiC_scaffold_1 77074201 539 - 233722169 TGGTCAGAAAATGTCAGTTTAAACTCTTAATGTAGGGACTCACTAATAAAGTTCAAATGGGAATCAGGATCACAATAGAGGAAGGA-ATGAACAGGGTGTTCAAGGGTGTTTCACAACTTGTGGGATAACTTGAGGTTGGAATGAGATTTTCACC-CATCGGCAGAGATTTAGAAAGTTGCCAATGGTTTCTGGAAACCTCAAGGCTGAGCAGCTGCAGAT----TTGGCTTAAATAATCCAGAGGAGCTGGCTggggaggaaaacaaaatagcaaGGCTTTGCTGGGTACC-AGGGCTGAATGGAGAAGGGTGTACTGGTTTTAATTATTCTTCCCATCTCATCATTCCCCTCTG-AATACAATGCATTCTCCC-CCTCCTATACTCTTGCCTGCATCTAAGACATTAAAGGTCCCTCAGCATCTGGGGCTGAGAGCCGAGGATTGTGATAAATCTTTCCC-CTACAGCCTGGGCTTCCCACCACTTTCTTTTTCATCCAGACAGGCTTGGGAGCCTGCAGTCCCTGAAGAAACTTGGCTGTGATCCT

a score=10148
s chr3            61225088 469 + 160039680 TCATATAAAGGCTCTAGGAAGGAAGGAAATTCT--AAGCAGAAGCCCTAGTTTTTACAG---TGAAAGTCAATATTTTGCCAAGCCACAAAACCAAGGTGGCTGTAGTGGTTCTTACAGAAA-----------ACAGAGGC-----CAG-----------------TGGGAGAAAAGAGTCACTGAAGATG------------------AGAAAAACCACAGATTACAACAGACCTCTCAACTCTGCCAAGCACAGTGGTGGCAGGGTCAAGCAGCTACCAAAAAAGACTTGATTTATACAgtgtgtgtgtgcatgtgtgtgtgtgtgtgtTGGACACTGAAGACTATAATTGTGAC-AGTCATGTAGCAGCTTATACTAGTTTCTGTTCTGTAGAA--TATAATATATTCCAGCCAAAGACTTAATGTATACATTTTTTTCTTCCAGGCATCCTGTTGTAATGTAAATAACAATTTACATTAAATTTAATAACCTCATTATGACTCCTAATCAAACTACCTCTAAAA
s HiC_scaffold_1 212566923 486 - 233722169 TTACATTATGGGCCCATGAAAGGAGGAAAGTCTGGAGGCAGAAGCTCTGGGCTATATGGGGGTGGAGACCAATACTTTGCCAAGCCACGAAATCAAGGTGGCAACCGTGGCTCCAGCAGTAATGGAAGCtatggcagaggcagaggcagaagcttTTAAGTCCTGCTGGGAAAAAAAGTTCAGCAAAGCAGCAGAGCCAGACAAGTGACAGAGAAGCCACAGCTTACAACAGACAGCTGAGCttggccaggcacagtggtggcAGGGCCTCACTGCT----AAGAAGACATGTTGTAGATG------------AGGCTCATGTGTATGGACAGGACACTCAGGA-------TGTGACTAACTGCAGAACAGgttattttagtttcttctctGTGGAAAGTGTAAAGCATTCCAG-CAAAGGGTTTCCATGCAGACTCTTTTTTTGTACCCATGTTGTTG--------------ATT---GCTAAATGTATTAGTGTCATCACGGc-actaaataaacttctttttaaa

a score=9733
s chr3            61225105 464 + 160039680 GAAGGAAGGAAATTCT--AAGCAGAAGCCCTAGTTTTTACAGTGAAAG---TCAATATTTTGCCAAGCCACAAAACCAAGGTGGCTGTAGTGGT------------------------------------TCTTA--------CAGAAAACAGAGGCCAGTGGGAGAAAAGAGTCACTGAAGATG-AGAAAAACCACAGATTACAACAGACCTCTCAACTCTGCCAAGCACAGTGGTGGCAGGGTCAAGCAGCTACCAAAAAAGACTTGATTTATACAgtgtgtgtgtgcatgtgtgtgtgtgtgtgtTGGACAC-TGAAGACTATAATTGTGAC-AGTCATGTAGCAGCTTATACTAGTTTC---TGTTCTGTAGAATATAATATATTCCAGCCAAAGA-CTTAATGTATACATT---TTTTTCTTCCAGGCATCCTGTTGTAATGTAAATAACAATTTACATTAAATTTAATAACCTCATTATGACTCCTAATCAAACTACCTCT--AAAAGAAAAAAATAGT
s HiC_scaffold_1 210326105 493 - 233722169 GAAGGGAGGAAAGTCTGGAAGCAGAAGCTCTAGGCTCTATGGTGGTAGAGTCCAATACTCTACCAAGCCATGAAATTCAGGTG-CTGTGGTAGtgccagcagcagcagtagctatGGCAGTGGGAGAAGGTTTTAAATATTGCCAGGAGGCAAAGCTTACCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAATCTGCAGGTTTCAACAGATTTGTGAACTCAGCCAAGCACGGTGCTGGCAGGGCCTCACTGCTA-CAAAGAAGACATGTTTCATA-------------AATACTCATGTGTGTGGGCAAAAAACTTGAGAACTTTATTTGTGGCTAATTGTATGAGAGATTATTTTAGTTTAGAGCACTATAAAAAGTATAAAGCATTCCAACAAAGGGTTTTAATGTagactcttaattttttttgcacCCACGCTGTTG--------------ATT---GCTAAGTTTAATAGTCTCATCATGATGCTGAATAAGTgtgttttgtaaaaataaataaataat

a score=10668
s chr3            61365050 501 + 160039680 GGAGCCATGAGAGAGTACAAAGTGGTGGTACTGGGCTCGGGCGGCGTGGGCAAGTCCGCGCTCACCGTGCAGTTCGTAACAGGTTCCTTCATCGAGAAGTACGACCCGACCATCGAGGACTTTTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTGGAGATCTTGGACACCGCGGGCACGGAGCAGTTCGCCTCAATGCGGGACCTGTACATCAAGAATGGCCAGGGCTTCATTCTCGTCT--------ACAGCCTGGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGCGGGACCAGATCATCCGCGTGAAGCGGTACGAGCGCGTACCCATGATCCTGGTAGGCAACAAGGTGGACTTGGAGGGTGAACGTGAGGTCTCCTATGGCGAGGGTAAGGCCCTGGCCGAGGAGTGG---AGCTGCCCCTTCATGGAGACATCGGC-----CAAAAACAAAGCCTCAGTGGATGAGCTATTCGCAGAGATCGTGAGGCAGATGAAC
s HiC_scaffold_1 154272826 504 - 233722169 GGCATCATGCGTGAGTATAAGCTAGTCATTCCTGGCTCAGGAGGCACTGGAAAGTCTGCTCTGACTGTACAGTTTTTTCAAGGCATTTTTGTTGAAAAATATGACCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCACAGCAGTGTATGCTTGGAATTTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGAGATTTATACATGAAAAATGGACAAGGCTTTGCTTTAGTTTATTCCATCACAGCACAATCCACATTTAATGATTTA-------CAAGATC-TGAGAGAACAGATTCTTGGAGTTAAAGACACTGATGATGTTCCCATGATTCTGGTTGGTAATAAATGTGACTTGGAAGATAAAAGAGTTGTAGGAAAGGAACAAGGTCAGAATCTAGCAAGACAGTGGAACAACTGTGCATTCTTAGAATCTtctacaaaatcaaaaataaat-----gttaatgagATCTTTTATGACCTAGTGTGGCAAATTAAC

a score=3982
s chr3            61617751 160 + 160039680 CAAATACAAGTGGAGCCTCTGACAGGTCCTAGAACCACCTGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTACCCAAAGATGATGTATACCTAAGCTTTGTGGCAGGATG
s HiC_scaffold_1 102194324 155 - 233722169 CAAATCTAGGAGAAAAGCTCAACATGAAATACAGCTGTGTATTACTTAAAGACAGGGATACATTCTAAGAAATGCATCATTAGGCAAGTTCATCACTGTTCAGATATCATACACTATACTTACCAGAACGTCA---AGATCCAAGC--GATGGTGGGATG

a score=4255
s chr3           61617790 83 + 160039680 TGTTGCTTAGCAACAGGGATTCAGTCTAAGAAATCTGTCATTAGATAATTTTTTCATTATGTGAGCATCTTAGATTATACTTA
s HiC_scaffold_1 31634589 83 - 233722169 tGTCGCTTAACAACGGGTATAAATTCTAAGGAATGTGTTGTCAGGCAATTTTGTCATTATGCAAACATCGTCGAGCATACTTA

a score=7788
s chr3           61986615 220 + 160039680 TGGCAAGGATAGGAAAAAGAAAACAAAGATCTTTAAGGAGAAATACATTGAACTGGAAGAGTTGAATAAGACTCAGTCTATTTTGATGAGAAAACCTGATAACGTCACTCAAGAGGAATAAGATGAATTCTATAAGAACCTCATCAATGATTGGTACGATCACTCGCCAGTCATGTGCTTTTCTGTGGAA--------GGAATTCGGGGCATTGTTCTTCATTTctca
s HiC_scaffold_1 53744418 207 - 233722169 TGGTAAgggtaagaaaaagaaagccaggaAGATTAGGAAAAC-----TTGACCAAAAGGAACTGAACAAGACCAAGCTCATTTGGACCAGAAACCCTGAGGACATCACTCAGGAGGGTTATGGAGAATTCTAC---AACCTCATCAGTGACTGG-------------CAGTGAAGCACTTCTCTGTGGAAGGTCAACTGGAATTCAGGCCACTGCTATTCCTCTCTCA

a score=9610
s chr3           61988444 255 + 160039680 aaagCAAGCAACAACAGCAAACTGTATGTCCATCACGTGTTCATCACAGTCAGTTGTGATGAGCTGATACTTGAGTACCTCAGCTTCTTCTGTGGTATGGTTTCCTCAGAGGACCTACTGCTGAGCATCTCCTGAGATGTACTCCATCAGAGCAAGGTCCTGAAAGTCATCTGCACTTTCATTCAAGACACTGTGAAGAAGTGGCTTGAGCTCTTCTCTGAGTTGTCTGAGTATAAAGAGAACAACAAGAATTTT
s HiC_scaffold_1 53744652 243 - 233722169 aaggaaaaagacaagatcaAACTTTTTGTCCATTACACATTCACCAACGATGGCTGTGATGAGTTGATCCCCAAGTACCTAAACTTTATCCATGATGAGGTCAGTTTGAAGGACCTGCTCCTGAACATCTCCCAAGAAATGCCCCATCA---CAAGACCTTGAAAGTCATTCCCA---------AAAACATAGCTAAGACATGCCTTGAGCTCTTCTCTGAGTTTGCATAAGACAAAGAGAACATAAGAAATCCT

a score=8249
s chr3           62023091 172 + 160039680 TTTGATTTCTTTGACTTTTATGAGTCCTAGGCATAAGACAGCTTTGGATACTACATCAGGCATCAAGCTAGGATGAACAAAAGACTACCATCTATTCTACACATGACTGATATAAGAACAATACCAACA---TGGTGTCTCTTTGCTCACTGCCAGGGAGGCAAATTCAATTTTT
s HiC_scaffold_1 37912082 174 - 233722169 tttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAA-CAGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGgggtctttttgcttttt

a score=8449
s chr3            62108801 816 + 160039680 tagaggacatcaagaaggactttaataaat---cacttaaagaaatacagga-gaacactgctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacaggtagaagtccttacagaaaaag----aggaaaaaacatacaaac------aggtgat-----ggaaatgaacaaaaccatactagacctaA--AAAGGGAAGTAGACACAATAAAGAAAACTCAAAGTGAGGCAACACTGGAGATAGAAACCCTAGGAAAGAA-------ATCTGGAACCATAGATTTGAGCATCA-GCAACAG-AATACAAGAGATGGAAGAGAGA-----ATCTC---AGGTGCAGAAGATTCCATAGA---GAACATCGGCACAACAATCAAAGAAAATG-GAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAATCCAGGAC-ACAATGAGAAGACCAAGCCTACGGATAATAGGAGT-GGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTT--------CAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATG--CCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAG--TAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCT
s HiC_scaffold_1 161452351 802 - 233722169 TAAAACAAATCAAGGAAGC-----ACAAATGGACACAGAAATAAAGATAGCATGAACTATACCAAAAAgtgataga-----aaagaagaaatgatgagcTCAA------AGGGAAAA-----TGAAGTAAAAGGCCAAAGAAATATCACACAAAATGCCCAAAATGATTGcaagaaaatgagtaaaaaagtGTAAGAGCTGaccaaattaatttaaaaacatgaatg-----ttGAATT-------CACTGAAGATATAGAatcttccaaaaaattaaaatacctgaaattaaaattttgagtgTAATGCATAAGTAGTACAAATGACCAATGTGAAGTCATTGTCTCTAAAATTGAAGACAAACTGATAGATTAGGAAATATATAGATAAGCCATAAAATATATGAGAACAAGAGAAGATC------------ATTCAGTGGTTACTAGATGACACTAAAAAGAGCAA-CCTAATGCTAATTGGAGTTAGATAA--------------AACCTGGAGGATAACCAAACTTTTTAATGCATTTACAAAAATCCTAGGAGAAAATTTCC--AATTTGAGACAAGAGTTAAACCTACAAGTAAACAATA---TTTCAGAACACCAAAAAACTATGAT--GAAAAAAATTTGCCATCTCTGCTAAATTGCTAGG-TATCCAA--CaagagaaaaactcaaaatttcaaaagcagtCAGAGATAAACAGCAAAAATAACGCATTAAGGTAAAtccaccagaattacagcagacttctgagcACAAACTTTAAAAGTGAGAGGAGCTTGGAATGAGGCATTACAAACTATAACAGCAAGCAACTTCCAGTCCAGATTAATAAATCCAGCAAAACTTT

a score=20478
s chr3            62109083 1625 + 160039680 ACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGATTCCATAGAGAACATCGGCACAACAATCAAAGAAAATG-GAAAATGCAAAAAGATCCTAACTCAAAATATCCAGGAAAT-CCAGGACACAATGAGAAGACCAAGCCTACGGATAATAGGAGTGGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGAC-----------------CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACT-------AAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTC-TCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAAC-CAAATTCACACATTATCTCTCCACGAAT-----CCAGCCCTTAAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAG---AAAAAACAG-GAATGT---AATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAA----CAG-------AATGCCAAC-TTTAACAACAAAAATAACAGGAAG-------CAACAATTA---CTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATT---AAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCA
s HiC_scaffold_1 150311093 1575 - 233722169 ACAGAGTGCCTGAAATTGAGAACAAAATAGTGGATTAGGATGAATACTCAAAGAAACTC-----------CAAGGAAtataagagaatgagagacaat------------tATCCAACAGGTACTATGTGACAATAAGAAGGCCAGTCTAAGGCAAAATggattaagagaaaaattaaaatat--aacaca---GATTTACCAATATGGTTTAAGAAATCatagaagaaaaatttccaaatataagAAAGGAGTT--TAAAAAACATTATTGATGCTTACAGTACAGCAAACAAACCtaacaacacaacaacaaaaaacaaagaagaagctTACCAAAGTACATCCTTACTAAATTATGAGatgtccagaaaaaaaaatgacaatagaaTTCTTttacaaacaaaagaagaaa---acatcacaCATAAAGGTAAACCAGTTAGAGTCACAGCCTACCTCCTAACATAAACTGTAAAGGCCAGAAGAGATTGTAGTGAAATACCTCACATCTTGAAAGCAAATAATTTTC------------------TAGCAAAagttgtccttcaaaatagatggagaaataaagtttCTCCATGGAAAAACATCAACTCAAAGGATAT------ATGAATGTTAGCCATCACTAAAAATCAT-----TTAAGAATATTCTccacagaaataacaaaactgactCAGCTAAAAACACAGAGGACATGAAAATTCCAAGTAAGATCAATGAATAAAGAGCAACAAAAaatgtcaggaaaagaaaagcaaacattcaCCAGCAGATAAAGAAGGCAGTTATATTCAAGAATCAACACATCTCAGTAGTATCTTTTAATATTAACAGCCTCAATTCTCCAATTAGAAGACAAAGATTGAGAGAATGGATTGACAAACAAAACCCAACTGTC------------AAAACTCATCTAATctaaaaagatattcacagacaaaaaattaaagggtagaaaacaacatttcatgcaCTAGGACCCCCAACACAAGCATGGGTAGTATTTCTAATACCAGAGATG-CTAAATTCAAACTAAAACTGattagaagacagaaagaaaagaactacTAACTAGTCAAGTGAACAatccaagaaaaagagataacattaataaaaatatatgcaccaattcTTGGAGCACCTATGggcataaaacaaaaactgctgaaGTTAAAAGATCAAGTAAACACTAATACAATCATAGAGAT---TTTTAACACCCCACTTT--Tccagagacagatc----aactagaaaaataaaaaaaaaaattcagagctaAACAACACTCTTAAACAAAGAGACTTAGTGCATATATACAGAGTATTGTATCCT-CTGCAACAGAGCATACATTTTCTTCAATAGTTCATGTTACTTTTTCTAAAACAGAACATGTACTAGTCCACAAAGCTTgtgtaagaaaatacaaaagaattaaaattacccAAAGCAT--------------GTGCAATGAAAATAGAAGTCAAAGACAAGAGAATGTTTGTGAAAAGCAA-AATCTCCTGGAAAATTAACAGCCTATCCCtaaataa--------acacagaagaaacc---aAAGAAATTGACAAATTTCTGGAAGTTATTGGTTGCGACTG----TACAACTTATTGAAATTATTGCAATACTATAAAAACA

a score=14516
s chr3            62109142 1074 + 160039680 GGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAA--------TATCCAGGAAATCCAGGACA-CAATGAGAAGACCAAGCCTACGGATAATAGGAGT---GGATGAGCATGAAGATTTTCAACTCAAAGG-ACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAA--GCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG--------GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCC-ACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAA-------AACCAATACAAGAACGGGAAC--AATGCCCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAA-----TAACAGGAAGCAACAAT------------------TACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACT----ACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGG-----CACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCAT-TAAAGAAACTTTAGT
s HiC_scaffold_1 185221884 1088 - 233722169 GACAAAACAGTGAATTAGAATTAAGAGTTCAAAGAAGCTATAAGAAAAAGAATAGGACTACATAGCAGCTCTTGGATGGCAACAAGAGGAACAA-TCTGAGGCTGACTGAGGTTAGAGAAAAACTGGGAGAT----AGCACGGAGGGATTCACTAACATCCTTttagaaatcatgaaagaaaatttcccaataacaagaaaacaatt--taaagtacAAATAAGCATTGCTCCTAGAACACCAAACAATTACGATGGGAAAAGAAACTCACCAACACACATTCTTATTA-AGTACCAGATATCC--agcaaaaacacaattttaaaagcagtcagaaGGCAGTGGGAAAAGATC---------------TCAAGTCTAGGTAAATCA-GctacacttctcaacacaaacactgaAAGTCAGAAAagcttggagggaagtatttcaagtcctaagaACAactaactttcaacccagattaattTACCTAGC-AAATATTCCTTCAacatagatggagaaat-aaagtatttctatGTGAAAGACCAACTCAGAAAATATATGAGTGCTAAGCCAGCTcc----agaaaaattactttaaaatattcttgacAGATACAGTAAATCAAATCAGATGCAGCTGAAAACAGAGGGAAA------CTGGTGAGGCAATAAACTAAACAGCAACAAAAGGA--------actgggaaaataaaaagcacataCCAGGAGACGAAGACGGCGACGGTAGTAAATGACACATCTCAGTAATAGCTC--AGTGTTAATGTCCTCGACTCGCTAATTAAAAGATATAGACTGACACACTGACTCAAAAAACAGAATCCAATAATCTGTTCCACTCAAGAAAT-CATCTAATCCAAAAA---AGACATTCTTAGACTAAaagttaaagaatggaaaacaacattttatGAATCAGGACCCCTTAAATAAGCAGAGGTATTAATTCCAGTATCAAACATGGAAAACTTCAAATTAAAAttgattagaaatgaaaaagaaggtgtcTCCACTACATACTAGCAAAAGGAACAACCCAACAAGAAGAGAGACTACAGataaacatatatgtaccaaGTACTGGGGCACCTATCTTCATAGGGAAAAACTGCAGT

a score=20488
s chr3            62109147 1741 + 160039680 AACAATCAAAGAAAATGGAAAATGCAAAA-AGATCCTAACTCAAAATATCCAGGAAATCCAGGACA-CAATGAGAAGACCAAGCCTACGGATAATAGGAGTGGATGAGCATGAAGATTTTCAACTCAAAGGACCAG-CAAACATCTTCAACAAAATTATTGA-AGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAG-GTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAG-CCAGAAGAGCCTGGA--CAGATGTTATACAGACACTAAGAGAACAC-------AAATTCCAGCCCAGGCT---------ACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGT---AATCCCTCA-----TCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAAC--AAAAATA-------ACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGA---TAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCC--TAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAA--ATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAA-----GAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGC--CTCCAAGAAGAAACGGA--------------AGAGAGCACATACTAGCAGCTTGAC---AACACATCTAAAAGCTCTAGAAAA------------AAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAA----------TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 155665285 1713 - 233722169 aaaactaaaaaaaaagagagtatgGAAAATGGATCCAAGGAAAATGGATCCAACAGCTGTTAGACAACACAAAGAAGACTAAC------AGTAAGTGGAATTAGTGA--------------AAATCAGAAGACAGGGAAAACGacataaaaaaatctgtttacagaGCTTATATCCAGTATGAAGAAACAACATAACACGCAGATAAGCAAGATATGTAGATTCCTAAACAACCATAACCAGAAA-GAAGTTCTCCAGGACACAGAacagtcaaaattccagaagtccaacacaagaacagagtcTTAAAAAGCGTTGGAGAAAAAGCAACACATCACTCCTAAAAGTAAAagcattagaattacagcagacttctcaacaaaatcCTTAAAGGGCCAAGAGAGGCTGGAGTTAACTGTTTCACCCTCC--------ACACCCCCTTTAACTTTCAACCCAAACTCTTATAATTATTATGCCCtacaaaattttt--tcaaaatcgGT-----AAACATATCTTTCAATGACACAATGCATCTTATGAAATTTATAAACACTAATCAAGCACTCCAAAAACTTCTCAAAGA-------TAAcccagaaa--gaaacaatg--------aaactgagaatgtcaaaatgtttaaagaatgaaaacatcagGTAGGATGAGCAGTGAAGCAGAAGAA-----TCAACAACCAGAAAATAGTGCAGGACAGGAATAAGTAAAAACCTTTCAG-AACAGTTCTCAAAGTGAGAGGTCTCAAATCCTCAAACAAATGGTACAGATTACCAGATTGGAT-CATAAACAA-----ATCTGTATTCTGTATTTAAGCAACACTTTTAATCCACAAagaattcatagactaa---aaatttaacaaaagaaaaacaatattccaggGAACAAGAGCTCTAAAACAAGCCAGAGTAGCTATCCTGGTTTCAGACAAACTGGATTTCTAGCCAAAATTGATCAGAAAAGGTCAAGAAGGTCACTATGTATTTGTTAAGGCAACAATTCAAGGAAACAAGATTACAATTACAAACGTATATGA-CTGAACACTAGTACACCCAACTTCAAAAGGCAAACACTACTGGGCACAAAAGATTAGATCAACATCAACACAATTCTAGAGGGGGACCTGAGTACCCCACTATCACAAgtagaccaactagacaaaaaaaaaaaaaa-----------tcagagttccAAAACTTCT--AACAAATAGACataatagatatatacatagtATTCTaaccaataaaatagaaaaatacac--ttattttGGCCATACACAATGCTTTCTACCAAATAGAACATACACTAGCTGATACAGCATGCTCGAGTAAATACAAGAGAATTGAAATCATTCTATGTGCATTATCCGCTCATAGTacactgaaactagaaatcaatggcaaaataaaccatGAAAGTTATTGAA-----ACGTGGAGA-TAAACAATATACTCTTGATTAATCAATATGTTACTGAAGAAATTAGGAAGCTCCTGAAATCAAATGCCAGT------------------------ACAACACATCAGAACCtacgggacacaatgaaagcaacactAAGA-GAAAGTTCATAGCTATGAATGTCACtcaaattacaaatgaaaaaaataactttacaGGGAGGAAATCCCAGTGACTCCACTTTAACAAATGTTAAAAGTTGACAAAATTTATAATGAGCAATAAAGCACTTTGACCTTTGAAATGATGAACTCAGAAAACCTCATCATCTAATCA----CAGG---GAAGCCaaacaagaaaaaccaaaaa

a score=18086
s chr3            62109234 974 + 160039680 GATAATAGGAG-----TGGATGAGCATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTT-----CACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTT-ACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAA---AAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGT-----AATCCCTCATCAA--ACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAG--CAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACT-----GGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCT----CAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATA-CAAGGGCAGCCACATTCATTAAAGAA
s HiC_scaffold_1 125873502 963 - 233722169 GATAATAACAGAATTatagaaaaggaggaaaatttaaaa---gaaatttcaaaagatgTGTTCACTGAAATTATAGTATAAAACattccaaatataggaaaagaattcAATATCCAAGTATAGAAGATCTGTAGAACCCAAAATAGCCACGACCAGAAAAGGAGCTCTCCATGACACATcttaatcaaaattccagat--agtcaacaaaaagagaatactaaaagccattagagaaaaacAGCAAGTAATCTACAAAGGCTATCTCATCAGAATAATGGTGAATTTCTAAGAACAGCAGAAAGATTAAAGGACAGGAGAGCTTGTTGTGAAgtttt-caaaccctaaaagaaaacaactatcaGCCTAAGCTTTCATTTCTTG--AAAATCACACTTCAAAATTAATACAGAAGGAATGAATTTCCATGATGAAGAAAACCTAAAGAAATCCATGGCCACTAAACCAGCATTGCAAAAAATACTTAAGGGAATTCCAGACAGAGACAAGGA-GGTCACAAGCATCAAAAGTCAAAAGGAAAGTTTACAAATAATTGAGAAAgtagtttaaaaaggaaaac----ataaaggaaTA--AACACTGGAAAATGATACAATGGCAAATTCAATAAACATCTCACAGTGAGAACTCTCAATGTCAGTGGCCTTAACTCTCCAATTAAAAGGCACAAACTGGCAGATTAAATAGGGCAGAAAAATGAGACCATATAT-----TGCCTAAATGAAACACACCTCATCCAAAGAGAAATATATACACTG----AAAGTGAAAGAATGGGAAATGATTCTCAATTTAACCAG--AGACCAAAGAAAGAGGAGTAGCTATCTTATTTTCAGACACAACAGACTGCAAG--CAAAATTATCAGAAGAAACAGAGATGACCACTACATAATGATAAAGGGaacaataat---------------aattacaaatatctatgcaccaaatctCAAATGCA-ccaactttataaaataa

a score=26164
s chr3           62109282 1753 + 160039680 AAACATCTTCAACA-AAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAG-------CCTACAGAACTCCAAATAGACTGGAC-CAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAA-GTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGA------TGGAGAAACCAAAGTATTCCACGACAAA-----ACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAA----AAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACA---GGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAA--AAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAG-AAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAA-AATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACA-----TTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAA---------GTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTA--AAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCA----AGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAG--CAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC--AAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAG
s HiC_scaffold_1 34546238 1703 - 233722169 AGAAATCTTTTATATAAGCCATGATAGAAAACTTTACAAGtgcaaagaaagat-------taaacataCAGATAGGTGACACTTAACAGAGGCCCATTTAAGTATGATGAAAAAAAGGAGTTCCCCACGGTAAA-AATAGTCA---CCTAAGATGTGCAAcccaaa-----aatcttaaaa----tgtccAAAAATGGCTAACATTACATACAAGGATTACTCCACCAGGATTATAATGGATTTCTCAGTACAAACTTTAAAAGCCaggagagcttagagtgaaaCGTTTCAAGTCCTTAAATCAAATAATTTCCAACTCATGCTATGGGACTCTGCAAAACT----------ATGGAAAATGGTGGAGAAGCAAGGACATTCCACAACAAATGAAGCCTTAAGAGATAGATGAACACCACAGGAAC---Actctgaaaatatt-----cagaaattccTAGACAGAGACAATGAAGCCAGCAAGG---TAAAAGAGTCATATGGAATGAG----TGTATCAAA---ATACACAGTCAAGCAAAAGAAAGGAGTCATCAATTGAACAAGAATTCTGTGAcagtaataaataaataccttGAAGTAATATCTGTCAATATGAATGTGCTTAACACCTCAATTAAAAGACACGGGTTATCAGATTGAATCAAGAAACTGAATCCAACAATCTGTTGCATTCACTAAAGTCATCTAATCCAAAATGAAGCtgatagactgaaaatcaaaggttGGAAAACCATATTTCACAT-ATTGGGGTGCTGAAAACAAACATGAGTAGCAATGTTAATCCCATACAGGTTGAATttcaagctaaaactgatcagaagaggcaaagaaggtgcCTACGTTAACAGGtaagaaaataattccaaaggaagagagaac-attttaaatatatgtgcaccaagtAC--TTGCAGGcgtaattccttttttaaaaacactactgTACA--TGAAAGAATAAACAGCA----ACACATCCATAGTGGGTGACTTCAGAACCTCCTTTTCA-------------CAAAGAGatgaaaactaaacaatgaaaaa---gaaatatcagagcagaGCAACATGTTTGAACAAATTAACCTTAAAGGTATCTACACAGATCTCTGTCCTATTTTACAGTAGAACACACATTCTTATCATCAGCAGACAAAACTTCCCCCAAAATAAACCGTGTAGCAGTCCACAAGCCTg-cttaaagaaatacaaaaac-tgGAAATCACTTCATGCA-CCCAACAGATTATTGTacactaaaactggaaatcagtcaC-AACAGAAATCATAGAAAATGTATAAACTCCTGAGAACTCAATAGCACAATCCTAA---ATATCCAAagcatcacagaaaaaaatcaag-aagaaattaaacaatttttaga-atcaaatgataatgccatTACAATACACTAGGCCCTGTAGGACACAAGGACAGCAATcttaagaggaaagtttattgcagtATGTGCTCACATTAGAAAAATAGTGAAAGCTCA----GGTAATCTAATGATAAAGATCAAGCTACTGGAAAGGCAATAGTCTAAAT-------AGAAAACTAAAT-GTGGGAAATCTTAAATATCATAGtggaaattaacaaaattgaggCTAAAGaagaacaatacaaataatcaGTT-------GGGtcgattctttgaaag----aacaaaattgataaaccctaaggcaaacttaccaaaagaagaagaaaaaagacacacatcaatgcaattgaaaatgaAAAGGCTAAAATCACAGTAG

a score=21753
s chr3           62109295 1521 + 160039680 AAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAG-TATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACCAATACA-----AGAACGGGA--------ACAATGCCCTAGAA-----AAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAAC--AAAAATAACAGGAAG--------CAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACT-CCCCAATAAAAAGACATAGACTAACAAACTG------GCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACAT----CTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGG-CACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTT--CTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTG-GGACACAATGAAAGCATTTCTAAGAGGG---AAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAA
s HiC_scaffold_1 15467768 1429 - 233722169 aaaatcatagcagaaacaattttaaatctAGGGAAACAATTCAGTATTCATGTAAATGAGGCATAGA-AACCTCAAAGAGCTACCaccagaaaaaaa--tctacatattacatcataatgaaaatttcaaaaattcagcacaaagacaaaatactaaaaactgttagagggAAACTTCAAATAAGCTATAAAGGCAAACCTATCAGAATAATAACCAATTTCTCATCACAAACTTTAAAGACTAGGTGAGCTTGGAGCAATATTTCTC--GTACTAAAACAAAAGAAGTCCT--TCTAGATTTCTGTATCCTGCAAAATTCTCTTctaaaattgatagaaaaaatgaagatttttcatGACAAAGTAAACCTAAGGAA------ATTCACCAA-CCAAC-------------ATAgcaaaaaaatttcaaggcatccCTAGAGCGACAGGGAGTCCATCAGTCCCAAGGATCCCCAAAGAAGGAACATATTT---------AACTGGGAGGGTatttaaataagatgaaaaaatGAAACTCAACACTGGAAAAGTAATACAATGACAAATTTCAGCAAATACCTTACAGTAACATCTGACAGTGTGAAT-GTCTTGGCTACCCCAATCAAAGGACACAGAGGGGAGGACTGAGTCATGCCACCC---CAAATTCCAGACCTGTGTTGCCCACAATAAATACAGGTTATTCACATAAAACCACATAGGCTAC----AAGTGAAGACATGGGAGATGATATTCCATTC-ACTGGAAGTCCAAAACAAATATGCCTAGCTATATTATTTTCAGA-AAGACTAACTTCAAGCTAAAATtaattagaagagacaaagaaaagccACTTAATATTGATAAAAGGAACAACTTAACAGGAAAGagtaacagttataaatatata----------------------------------------ttgataGGTATCAAA------------------ACAATCATGGTAAGGAACTTCATTACACCAC-CTCATAAATAAACAGGTCAGTCACacaataaattaacaaat---------aaatatcagTCCCTGTCATGCAAATAGTCTTAACAGATATCTATAGAGTGTTTCTTC----AACAATAGAATGCATATTTTTATCAGTAGCCTATTGAACTTTACTCAGAAAGGACCATATCTTAGGACCTAAAGCATACTTTAGCAAAGACTA----ATTGAAATAATCTCTAGCATACTAGTACATCACAgtagaatgaaattagaaattaacagcaagaaaaaac-acagaaactacACAA-AAAATGGAGATTCCATAATACACTTGAATAAACAAga----agtcacagaagaaataaaataagaaattaaaaagttcctaaaatc--aaataataggaa--cacaaaatactaaaacttATGAGGAAATAATGGAAGTAGTTTTAAGTAGGTCTAAGATGGAAGTCTTTTCtgactttaaaac-------aataaaacaattactaataatCTAATTATGCATCCCAAGGCCttggaaaaacaagaacaa

a score=48421
s chr3            62109299 3284 + 160039680 TTATTGAAGA-------AAACTTCCCAAATCTAAAGAAAGAGATGCCTATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAG-GGAAAAAGGTCAAGTAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATT-CCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTC-------ACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAAT----------AACAGAAAAAA-------ACCAATACA---AGAACGGGAACAATGC---CCTAGAAAAAACAGGAATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACA--AAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGAC-ACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTA-ATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACAT---TGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGA-CACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAA----GCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCCTCAACAAAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATACAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAatagaagcacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaggatctcccatgctcatggattggcaggatcaacattgtaaaaatggctatcgtgccaaaagcaatcaacagattcaatgcaatccccatcaaaattccaactcaattcttcaacgaattag-aaggagcaatttgcaaattcatctggaataacaaaaaacctaggatatcaaaaaatcttctcaaggataaaagaacctctggtagaatcaccatgtctgacctaaagctttactacag----agcaattgtgataaaaactgcatggcactggtatagagacagacaagtagaccaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcaaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaa-gccttgaagatatgggcacaggggaaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatat-aaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag---------------------------------------------------------------------------------------------cagatgctggcgtggat-gtggagaaagaggaacactcctccattgttggtgggattgc-aggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaa------------------------------------ttggacatagtact-----------------------accggag---------gatccagcaatacctctcctgggcatatatccagaag-----------atgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaa-atgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaatttctaggcaaatggatggacctggagggcatcatcctgagtgaggtaa
s HiC_scaffold_1 188662038 3103 - 233722169 TTATTGAAAGCACATAGAAATTTTCCAAATCTAGGAAAAGAATTCAGTACTCTAATAagagaggcatatagaaccccaaatagccacaaCCAGAAAAGAAACTCTGTATGACACTTCagaatcaaaattccagaaattcaaccaaaggagagaatactaaaagatgttagaggaaaaacagtaaataatcTGTAAAGGCAAGCATATCAGAATACCAGCAGATTTTTCAGCATAAACCTTAAAAACCAAGAGAGCTCAG--TGAAatttttcaagccctaaaagaaagtaACTTGTCAAATCAGACTTTTATACCCTGCAAAATAAGCCttcaaaactgatagagaaataaagatTTTCCATGAC--AACGAAATGCTACAGAAAtacatga-----ccactaaaccagaTCAGCAAAAAATATTGCAAATCCTAAACAGAGGCAGAGATTTCACTAGCACAATGAGTGCCAAAACAATACACATCTAAGTGGGAGAGTAGTTaaat----------aaccagaaaaaaata-----aaggagtcaATGCTGG----AAAAATAATACACTGACAGGATTCAGTAAACAATTCGCAATAATGTCTCTTAATGTCAACAATCTTAACT-CCAAATGTcaaaagacagactggcagattgaatcaaaaatcaaattttaatcaTGAGCTGCCTTCAAGAAACACACCTCATCCAAAAGGAAGCACAAagactgaaaaatgaaagaatggaaaacactACT-CATGCAATCAGAACCTAAAGGTCAGCAGCACTAGCTACCTTATTTTTCAGACACAACAGATTTCAAGACAAAACTGatgagaagagaaacaaatgacCACTATACACCAGTAAATGAAACAATTCAATGGGAAGAGATCTCAATTGTtaatataaatgcaccaaatgtTGGCATGcccaactttataaaacaaaaactgttagaCATATAAGCACAGGTAAGTGCA----ATACAGTAGTAGCAGGAAAATTCAATACTTCACTTTCACAAATAGGTAATT-----AGACAGAAAATA---AGTGAACTATCAGATTTAAACCACATcattgaacaaatggacttaatagatatctacagagtgttatacccaacaacaaaaa---atacatgtttcTCAGTGACAcacagaactttctccaaaaaataccacatcttagGCCATAAAGATg--cttaa---atacaaaagaattgaaatattcCTTTGCATACTATCAGATCACAATGGAGTAAGACTACAAATTAACAGCCAAAGAAACTA--------------------TGGAA------------------CAATG-----TGGATCAATGAAGAAGTCAGAGGAGGATTTCAGAAGTTTCCA----TCATCTGACAAGGGAAACACAACTTGCCAAAGCCTACAGGAGCACAGTGGAAGCCACTGGAAGAGGGAAGCTCATAGCCATAAATGCACAGATTAAAAAAGTAGAGTGAGTCCAAGTAcataacctaatgatgcatcaCAGAGTCCTAGAAAAACAGAGCAACCCAAATCCA---AAAACTagtag-----aaaaaattataaatctcaggatagaaatgaatgaaattgagactaaaaaa---atacaaagggtcaatgaatcaatgagttggttctttgaaaggataaataagacTGATAAACCCTTAGTCAAACT--------------------------------------TCA---cccaaaaaggag-----------------------------------------gaaaggaaaggctcCT-----------------------------------------------------------------------------ATTActgcaatt-------------------------------aaaatgaaaa--------------------tagtagAATCA----------------------------------CAACACCACCAATGAAATC-----CAGAAGTTTATAAgaa------acagaactagaaaaaagccATCCTTAAAATTATATGGAACCTAAAGAGACCCAAAATA-CAAAAGCAATTCCAGATAACAAGAGtgaagcaggaggcatcacaatcccacatttgaagttataataaaatgctagtgattgaaaaaaaaac-acatgttaAGGACACAAAAGAAGAC-TGTGGGTCGGTGGAAGAGAACCAAGGATGTGGAAACAACCCC--------AGGGACACACAGactttgacaaagg-gccaaaaATATGC--TGGGGAAAAGTCTGCCCCTT-GGCATGTGATGCTGAGAGCACAGGTTGT--GCACGTGAACGAACACA----GACATGTACCTCTCACC-CGTGCTGAGATCAAATCAGAACAGATCAAAGGcctagatataaaa--aaaaaaactgaacctgcttaaatataaaataggtaaaactttttaaagttataagC-CTAGGCAAGGACTTACTGAACAGAACCCCAAGTGC--ACAAAGCAATGCcaataatcaacaaatggga-ttacagCAAATTTAAAACCTCT-CACAGCACAGGAAACCAAccacagagtgaagaggcaactCAGAGGATAAGAAAA-----CTGCCAACC---ACTCCCCCAGAGAACTAACATGCAGGatatataaaagaactcaaaaatattagaCCCCCAAAATGGAA-AGCCCAATCAAAACACAGGCAactaaaatgaacagatacttctcaaaagaaaaggcacaaATGCCA-ACAggtacatgaaaaactgttcagca-aTTAAGgcactaaagaaatgcaaatgaaagtaacactgagattccatcttactccaggaaGAAGCACTATCATCAAGAATTCAAATAAAAGGGGccggggattagctcagcagcgtaagtgcctgctcgGCAaacacgagtttgatccccagtaccaagaaaaaaaaaagaattcaaataataacaaatgctgttgtGGACAGGGGTGGGGGAGAAAGGAACCTACATTGTTGGCAGGAATGTAAAACTAGTACCACCACTGTAGGAATCAGTTTAGAGACtccacaaaaaaactaaaattacagcacctgcttggcaagcacaactcctgagctcaattctggcaccaaaaaaaaacccctaaaactagaggttccatttgacccagttattacCCTTCTTGGCATCTTCCCCAGAgctaaaagcatcatgccacagc----------aatatatacacacccatgttaatagcagcatgatttgtaatagctaagccttgaaaacagcccagatgcccattaacagataaatgaataaaaaaagatgtgtttttttaacacaatggaatactactctgtcataaagaag-gtaAACTTGAGACACTTTTAGGTAAATGCAGGCACCTTGAGAGTGtaactttaagtgaaataa

a score=20808
s chr3            62109386 1578 + 160039680 AAAGAAATTCCTCCCGACACATAATAATCAGAACATCAAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGAAAAAGGTCAAG----TAACATATAAAGGCAAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTC---AGTTACCATGGATGGAGAAACCAAAGTATTCCACGACAAAACCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGAT-----AATA----ACAGAAAAA-AACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGG-AATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACA-AAAATAACAGGAAGCAACAATT----ACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAA-ACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATA----GACACTACCTCAGAATGAAAGGCTGG--AAAACAATTTTCCAAGCA-AATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTA--------ATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTC-ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAA-ACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCT-GACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTC-ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAG
s HiC_scaffold_1 152824964 1489 - 233722169 AAATAATTACTTCACAATACATTTTActcaaaatcccagaagtccaaa---------GAGTCTTAAAAGATAttagataaaaa---caaaaccatcatttCTACAGCTACACTAAATAGGATTACAGcagatttttcaataaaaattttgtaGCCCAAGAAAAAGTGAAGTGTTTtaattc-----ctaaaagaaaacagcttccaatccagactaatatatcctgcaaaactatctttagtt------gatggaaaaataaggacATTCAAGGACAAAGAACAGCTTAAGAGATACATGAACACCAAAACAGCActcaaaaaaattcatgaatatcCTACACAGAgataacaaagacaaaaatctgaaca------taatgaatacaaacaaTCAAAGTGAGTAGTAAATCAAAAAGGGGAAAAC----AGAGGag----------tcaacaaaagaaaataaaaggcaacTGTAAGTCAAAACTATCCAGTAACAACTCTCAATATAAATGGCTTCAACTCCCCAACTGAAAAACACAGAGTAGCAGACTGGATCAAAAGTACAAAATTCA--AGTCTGCTAACT-TAAGAgactcatctaatccaaaaagaaattggtagactgaaaaaaaatcaaaggatgggaaaaaaaATACTCTGTGCATCAAGATCCTCAAAAGCAAGCAAGGACAACAATTTTATtctaaggaaatttaaaaaaaaaactttcaagttaaaactgatcagaagaggtaaaGAAGATCACTAAAGATTACTTAAGAGAATAATTCAATAGGAAGAAgtaacaattgtaaatatttatACACCAAATATAGGTGCACTAACCTT-ATACAACAAACTGCACTGAA-CACATAAGATCCAACAAATACCAATATAATCATAGTAGATGATTTCAATAC-CAACTTTCACTAATAAACTAAACATTTAACAAAGAAATCAGA---------GCTGAAccacac-----ctctg-aacaaatgaatttaaacagGTATC-ACAAAGCA-TCCACACtataac---agaatacacatttttttcaacaTCACAcaaaacattctctaaaatagaccacatactagctgaTAAACcctgcttaaataaatgcaaaagatgcAAAATCATCCCA------------------CATACACAAA--------TtccaaaaggaaacacaaaaattTTCAACCAGC-------TGGACACTAAATAACTCAATTTTGAATACTCAATGGGTCATGG------------AAGAAATTAAA-CCACTgcaaaaatcaaatgataacgCCAGCACAAAATACCAAAGCTTATGTGACA-----AAAGCAATGCTAAGACAGAATTTTACTGCCACAAATGCTTGCATTGGAAAAACAGAGTAAGCTCAAATGACCTACTGG----TGCCCCTGAAGCTACTACAACTACAGAAACAGTCCAGACCCAAACCAAGTACAAGGAAGAAATTCATAAAGATCAGGGGAAAAATTAACAACATTGAGACTACAAAA--TAACACAAGAATCAATGTATCAAAGaactatttctttgaaagaat----aaagtagGCAAA--ATCATCTAG

a score=17873
s chr3            62109490 1546 + 160039680 AAGCCTATCAGAATTACAACAGATTTTTCACCGGAGACTATGAAAGCCAGAAGAGCCTGGACAGATGTTATA----CAGACACTAAGAGAACACAAATTCCAGCCCAGGCTACTATACCCAGCCAAACTCTCAGTTACCATGGATGGAGAAACCAAAGTATTC-CACGACAAAA-----CCAAATTCACACATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGG-AATGTAATCCCTCATCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAA-------ATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAA--CATCAATGGTCTCAACTCC--CCAATAAAAAGACATAGAC--------TAACAAACTGGCT-----------------------------------------------ACATAAACAAGACCC-----------------AACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATAT------------CTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATT--GTCCCATGTATCCT-----------------------------ATCAGA---------------------------------TCACCATGCACTAAGGC-----------TGATCT------TCAATAACAAAAAAA---------------------------------------AATAATAGAAAG--------------------CCA----------ACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCA--CCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCT------------------------------AATTAACAAAATCAGGTCTGAAAAGGGA-GACATAACAACAGA
s HiC_scaffold_1 183082675 1717 - 233722169 AAACCTATTGGGATTACAGCAGACTCT-CAACTCATACCTTAAAGGCCAGAAAAGCTTGGAAAGAAAGCTCAGAATCaagctttaaaagaaatcaatttcCAAACCAGGCTGCTATACCCTGCTAAActagctttcaaaactgatgtggata--aagatattttcatgataaagagcatctaaagaaattcatgatc-----accaaaccagcactctgaAAGATTCTCAGTG--------CTATGTTAGAA--------ATGCAATAAATATACCATGCAGTGTGA-----------ACAGAATAGAAGACA--------AACAAAATGGACTCAGCAAAAGGAAAATAGTCTAATGATAAGAATAAATCAATacttttcagtaataactctcaaagTATAAATGATATCAATACCAATCACAACATAGGTTTGGACCAGGGACTTAGCCCAGTGGCTCAAGCCTTGCCTGGtgaatgcaaggtcatgagtttgatccctggtacaaacaaacaaaaacagtttgACAAGACAGAGAAACAGTATACTGTGTATAAGAAACaacatttacaaagaaatttaTTCACTA----AAAATTGAAGGGTACAAAACAGTATTCCAAGTAACAAGAACCTGAAAACAAGCACAACTATCTTTCCTTCTTCTAGACAAAGAGAACTTCAAGCCAAGTCTCATCAGAACAGGCAAAG---GCCATTATGTATTGATTAAGGTAACAATTAAAGAGGAAGATAGCACAGTTACAAACATAAGCACCAACTTTTGTGCTCTCAATA---------------TCATAAAGGAAAGACTATCAGATatcaaagatcagataaacatcaatacAGTTACAGTGGGGAAgctcaataccccattgtcacagatAGATTGACTA----AACAAAAATTTAGCAAACAAATATCACAGTTGAATCAAACTGT-AAATAAATGGACCCAACAGATATCTACAAAATATTCAACCCAATAATAACATAACACACAATCTTCTCAGTAGAACATAGAACTTCCTCTAAAA-----GATATATAAGCCAATAAAGCATGcttaagcaaatatttaaaaatagaaattccgaCCCATGCAtgttcaatgaaactgaaagccaATTGAAAAACaaccagaggggctggggattgagctcagcggcataagtgcctgccttgcaagcaggcagtcgtgagtttgatccctggtaccagtaaaaaaaaaaaaatgaaaaagacaaaaagaaagaaagaaagaaagaaagaataaaagaaagaaagaaagaaagaaaaacaaccagaGAAATTATGCAAgtacaaagaaattaaacaatatagaCTTGAATAGACAATGAGTCATAggggaaattaaggaagaaattagataGTTTCTAGACTTTA-ACAATAATGCTTATACAACACACCGAAACTTACAGGtcacaatgaaagcagtattaAGAAGGGCATTTATAGCTGCGAATCCCCATATCAGAAAAGCAGCGTGAACTCACA---------TAATGATGTAcctaaaatttctataaaaagag----aaattcaagTCCAAAGCTTGT-----GTAAcaaactataaagatcagaggagaaattaataaaattgagaataGAAGAC-----------------------ATGAGCtttttcattgaaagaataaataagatagaCAAAATCTTAACCAGTCTtgccaaaaaa-ggaaagacaaaatctTAACCAGTTTtgccaaaaaaggaaagactcaaatcaatagaattagaaatgaaaaaagatgaaGTAACAGTAGA

a score=9311
s chr3            62109670 1270 + 160039680 CATTATCTCTCCACGAATCCAGCCCTTAAAAGGATAATAACAGAAAAAAACCAATACAAGAACGGGAACAATGCCCTAGAAAAAACAGGAATGTAATCCCTCA----------TCAAACCTAAAAGAAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGG----------TCTCAACTCCCCAATAAAAAGACATAGA-----CTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAA-CACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAAC-AGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCC----AACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTA--AATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCT-TTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAA
s HiC_scaffold_1 170082630 1178 - 233722169 CATCACCTCTGCTCTAAGTTAACCACTAAAGAGGTCT--------AAAAATCAgtataa-----------atgt--taaaaaatagaaaaatagtatCATTTAAATTGTTCAGTTAAAACTACATAAAGA--------AGAACagaggacaaa-------aagaaaatatgaaggcAGTAACAAATATAGTAAATCATAATCCAACAGCATCAGTGAAAATCCTAAATGACAATGTACCAAGTAAACAATTTAGAAGACATTATTGGAATGGATCCA-AAACCAGACCCAGCTCTATGTTATATTCAAGAAGTACATTTTACATACGAAGATACttatatattaaaagtaaatgGATAGACATGGAAATGCCATGCTAGCACTA-GTCCAATAAAGTGGTagtgcttattttaattttaggcaAAACACACTTCTAGTGTAGAAAATTCATTAGAGACAAAGGTGAACATTACCTAATGAACAAGAGTCA---TTTTCAAGAAGA---CATGAGGCAAAAAGT----GATGCAAGTGCAAGG-----------------AGAAA--TAAATGAATC----------------------CACTCTCATAGTTGGGGATTTTAAACACCCCTCTATCAGGAATGGGAAGATTCAGCAGACAGAAAGTCACTAAGGATGCAGTTGAACTCAAGAGCATCATCAATCAACTGGATATAGTTGACTTCTATTGACCACTTCATTGAACATCAGCAGAGTACATATTCTTTTCAAGCTCACATGTAGGAGTTACCAAGATGGGCCACATTCTGGGTCATAAAGTACATCCCAATAAAACTTAAAGGAATAGAAAGCATGCAGT-CATCTTTTTGGACTATAATGAAATCCAACCAGGATTCAGCACCAGAACAATA-ACTGGAAAGTCTcataatatt----tgaatattaaacaTCACACTTCT-AGTTACACATGAGTCAAAG-----ATAAATCTTAAATTTAACAATACTTTGAATAT-------GaagatgaaaatataatttataaaaattgataGAAATGCAGTAAAAGCAATATTTAGGGGGAAATTTATAATACTTCTTgtctttataaaaaa----gaaaaatcacat------aaattaaattttcacCTGAGGTGactagaaaaagaataacaaatcca------gaaagcaaaagagtattaataataaaaattaaagtagaaatcaataaaactgaaaatagaa-aatcatagagaaaatcaaaaaaaCCATAAGCT-ACCGtgtgaaaagatcaa

a score=18546
s chr3            62109796 1295 + 160039680 CAAGAACAGAATGCCAAC---TTTAACAACAAAAATAACAGGAAGC---------AACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAG--AAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCA--AATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAA-TAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACA-CTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGC------CACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGC--TTGACAACACATCTAAAAGCTCTAGAAAAA-AGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAA--GAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCCTCAACAAAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATACA
s HiC_scaffold_1 121915853 1251 - 233722169 caacaaaagaaagacaaaggatTCATCAATAAACAAAGAAAGCAGTGTACTAGCTAATAATCAACACATCTTAGAATATATCTCGGTTAACAATCTAAATGctccaattaaaagaca--gatTGGAAGACTAGGT-CAAACACATAATTGAAAGGTctgctgcattaaaaaaaaatgtcatgtaATCCAAAAGATACATATAgactaaaaatta---tttcaaaaactgTATTTCAAGAACTAAGACCATGAA--AGCAAGCAGTAGCAGCAATTATAATACCAGATATAATAAACTTCAAGCTAACACATGGTAGAAGAGACGAAGAAGGAAACTACATTCTAGTTAAGGG-aaaatccaagaagaagagatattGAT---AAATATAAACGCTCTAAATATGGGAATGCCTGTGTTTATTAAACAACAACTGCTGAAATTAAAActtcaaataaacactaacacagtGAGTATATGGGGATTTTAACTCCCAGCATTC-CAAAGagatataacaaataaacataaaataaata---acagagcTGAAAC--AC--------TCGAACAGTTGGAATTAACAGTTATATACAGAGCATTCCTTCCCCCTATAGCAGAGTATGCATTTTTTTCAGCAACTCACGGTACTTTTGTCAAAGTAGATCACAGACTATTCCACCAAGcctaattaaataaatataaatgtactgCAGTTA-CCCATGTATTTCATTCGAACACTGTGCAAGaaagtaga-aatcaatgacagaagAAATGGTGGAAAAGGCAAAAGTTCC-TGGAAAAGTAATAATAtactcctaaacaaccagtggtTCACAGAAGAtatcaaaaaag------aatttttttagaaatatggaagttaatgaaattgattgtacaagtaaacaaaacctTTGGGACACTATCATAGCTGTTCTGATTGGAAAGTT--TTGCAATTAAtactcacattagaaaaacagaggaaatcCAAGCAAACAcctttttttaagaaatcttaagATACTTGACAAATAACAAgctaa--------------------ggaaagaaattataaaagtaagaGTGGAAATTAA-TACTTTGAGACcaaaataacaatatgaaataagtCAGCAAagcaaagagctggttcttcaaaagactaaataaaatggACAAGCTCTTAGCAAAAcgtactaaaag----aaagaaaagattcacatAAATGCAATTAGAAACCACAAatatgaaatcacaacagatact-ACCAAAACCCAA----------AAGATAGAAACTATTTTGGAAAGTTATA

a score=10146
s chr3           62109816 1218 + 160039680 TAACAACAAAAA------TAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACT------------------------------------------------------------------------------------------------------------GGCTACA--------------------------TAAACAAGACC----------------------------CAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGC--TCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTT---------ATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGA----TACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCT---AGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTT-TGAGAAAATCAACAAGATAGA-TAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACA
s HiC_scaffold_1 83822509 1302 - 233722169 taaaaaaaaaaaaatgtataacagaaTTGAGAAAACACTTTACAGTAATAATTCTCAATGTCAGAGGTCTCAACTTCCCAAGCAACAGACACAGACTAGCAGATTTGATTAAAAGACAAAACACGAGCTGGACAAGCTGGTGCAGCCCtggtatcccagcactcaagaggctaaggcagtgCTCCCCtcagcagcacatacactaaaacaggaggctgcagcaggagggtcACTCTGGGTTGAGGCCAACCAAAACCAcatagacactgtctcaaaataaaactacaaccatcTACTGCCTACAGGAGACACACCTCATCTGAAAGGAAGCTCACAGCCTGAAAGTGAAGG--TAGGAAATGAAGCTCCATGC-AGCAGAGCCCAGAAGCAAGCAGGAATGGCTGTCTCACCTTCAGGCACAGCCGACCTCAAGCCAAAACTGGTCAGAAGATACAAAGATGGTCACTGCACAGTGGTGAAGGGGGTGACTCAACAGGAGGAAGTGAGACTCGTGAATATCTACGCATTGCAAAT------------------------------------GGGCGCACAGGATG-AGTGGACACCAGGCAGCCATGG-GGTGGACCGCAACACCCCACTCTCA-CAGTG---AGGCCAGGTGGAC-------AAACAG-----CACAGCAA-TGTCAGAGTTTCTCCACACCATGGAATAAATGGGCCTAACGGATCCCTACAGAGTGCTTCACCCAATAGCAAAa------acattattctcagcagcacatgggacttttTCC-AACTAAACCACAC-TCAGACCCTAAAGCACGCTTAAACGACTTCAAAAGGACTGAGA--ACTCACTGCAAAGGCTCAGATCATAGCAGGATGGAGCTGGACACCAAGAGC-AGAAGAACCCACAGAAATC--ACAAAAACACGGAAATTAAACAGTA----TATCAACGAGGAGTGAACAGGTCACAGAAAAACTCAGGGAAGAAAAACACCAGGTCCTAGAATC--AAAGAAACGGAAGCC-CAACACGCT---GGCCCGGGGACACCAGGGAAGTGGTGCTGAGC-AGAAGCTCACAGCTGCGAACGC--TCAGCTACAAGCAGAGCAGGCGCCAGGTGAGGGAGCCGGTGACGCTTCAGGAGGTCCCGGGAGACGAGAGAGAGCAAGGCAGCCGCCGGTTAGCAGCAGGCGGGGAAGCACAGAGGGCAGGCCCGAAATGA------TGAGAAC-----GGACTAAACACGGAGGC-----ACCGAGGCAGCGCTGCTTGTGGAAGAATAAACACGATCCATTGAATCCTTAACCAGCTTCCTAAAATGAGAAAGG---AGAAATCTGCATGGAGGAATTGAGAATGAAAAGGGC-ACATCACAACA

a score=23786
s chr3            62109816 1296 + 160039680 TAACAACAAAAATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTA-AAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCT--AGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC---------AAGAAGAACTATTCGAAGAATT--AACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGAT----------------------------CCTCAACA-------------AAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATACAGGTACCAAAGTTGAATCAGGA
s HiC_scaffold_1 207798370 1289 - 233722169 taaagaagaaaatgatagtaAATAATCAATGTATCTCAGTTATATCTTTCAACATGAACAGCTGTAACTCTCCAACTGAAAGACATGAAttggcagactggatcaaaaaacagaatccaacagGCTTCTGCATTCAATAAACTCATCC-----AAAAATATCTACatagactaaaaattaaaagatagaaaacaatattacatGCAACAAGACCCAGAAAACAAATAAAGGTGTCAATTTtaatatcagacacaataaacTTCTAGctaaaactgattagaagagacaagg----tcactacataattaGATAATGAATCAATCCAACAAGAGATAACATTAAT-----AAACATGTGCACCAAATACTGGAGcacttttcttcataaaatagaaactgctgaaattaaaagatca-actaaacatgaaaaaataataaaga---attttaacaTTCCACTTTCATAAAT------ACCAACTAAA--AAAACCTAATGAATAAACTTTAGAGCTGAACCACATTTTGAA-CATATGGATTTCATAGATATTTATAGAATATTCCACCCCTCTACAGCAGAGTATACATTCTTTTAAGTAGTAAATGGTATTTTTTCCAAAGTAGGTCACAAAGTATTCCACAAGCCTG-CTTAAGTAAATTTATAAGGATTGAAATAACTTCATGCACACTATTAGACTAATGTGCCATGAAAATAGAATTCAGTGACAGAAGAAATTCTGGAAAAGCCAAAGTCTCCTGGAAAAATCAGCAACATac------acaatcaatgggtcacagaagaaatcaaaatttaaaagaa----tttctagAAGTTA-ATGACAATGATGGTACAACTTACCAAGACCTCTGGCAGGCTGTGaaa----ttctaagaggaaaattcattaCATTCAAggctcacattaggaaaacagagaaagctcaAATAAGTAATGTTATAAAAAATCTTAAGACACCTGAGAAACAACAAACCACTTCCACCCAAAA--ATTAAATAg--ggaaat-------ttaaaagatgaaatcaatgaaattgagacttaaacaaaagtaaagacagttaaaaaaactccaacaaataaaagagttggttatttaaaagaataaataaaagtgataagccTTTATCCAAACtcaccaag----aaagagaaaagatttacaTCAATTTAatta----tgaaggaaataaaatcacaacagatactGCTAAAATTCGGAAGAGCATAACTACTTCAAAAATTATGTTCCAACAAGTTAGTAAAGTTTGAAGAAATGAGTGGATTCCTTGACACATACAAACTCCTAAAACTAACCAAGA

a score=5339
s chr3           62109826 216 + 160039680 AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGG----AAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGC
s HiC_scaffold_1 52906948 216 - 233722169 AATGACAGGAATCAATCAATATCTTTTAGTAATTACTCATAATATAAATTGTCTCAAATCCCCAATCCAGTGTCACAGATTGGCCAGTTAAATCAGAATACAAATCTCAACTGTATGTGGCATATAAGAGTCAAATATAGCTCATGAAAAA----GCACACTTACTGAAAACTAagggatggaaaataatattgcaTGCAACAGGAGCCTGAAAGCAAGC

a score=15072
s chr3           62109826 1192 + 160039680 AATAACAGGAAGCAACAATTACTTTTCCTTAATATCTCTTAACATCAATGGTCTCAACTCCCCAATAAAAAGACATAGACTAACAAACTGGCTACATAAACAAGACCCAACATTTTGCTGCTTACAGGAAACACATCTCAGAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGG---GGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAA-ATCCTAATTAACAAAATCAGGTCTGAAAA
s HiC_scaffold_1 64285224 1072 - 233722169 aaCAATAGGTATCAGTCAACACCTATGATTA----TTCTTAATGCAAATGATCATATCatcccaatcaaaagacacagactgacagATTGAGTCCTAAAACACAACCCAAC----------TTA----------ATCTTAAAGAAAGATATA------ATctgaaaattaaaggatggaaaatgatacTGCATG-AAACAGCAGTCTTAAAGACAATGGGAGAATTATTTTA-----TACTTAGAT------CAAGCGGAAAGCCACAAAAGATTACAATAAAGTAAGTTACAACATACTGGTAAAGAGAATAACTCAACAGACAGTTataacaattttatatatata--------------gtgcatctaattttgtaaaataaat--------------------------------------------------acttC-------CACTGTTACAAATACATAGGTTAATCAGGCAAAATGCtataaaagaaatatcagaggTAAACCACACCTTAGAACAAATGGCCTTACTATATAACTATGGTATATTTTACTGAACAGAAACAGAATCAACATATCTCTCAGCAACACATGGAACTTAATGCTAA-TAGACTCCAACTTAGATTACAAAGCATacgtaaataaatgcaaatgaatcaaaataatctcatgcatattatcatgtCATGGTATAGTGAAACTACATACCAATGG-AAAATGAAACCACAGA--GGCTATGTAAACACAGAGATTATATAATACACTCTTAcataatcaataggtcacagaaaaattaagaaagaaagttaaaaagttCTCAGATTTAAATAATATTAGCAGT-ATAATGTACCAAAACCTCTATGACACAATAAAAGCAATCCTATCAGGGAAGCTTATAGCTGTAaatacacacattaaaaaaaaagagtgagctcaaataTATAACCTAATGATGCCCCAGAATGTCCTAGGAGAATAAGAGCTATGCAAATCCAAATTGGTGccaagtagtaaattat-aaaatcagagcaaaatttaataaaattgagactaaGATAAc-atacaaagaaccaatgaacCATAGAGCTGGTTCTATAGTAGGATAATCAATATAATCAAACccttaattaaa-ttattaaaa---aaagaagcaaagactcAAACCAATGCAATTagtaatgaaaa

a score=15029
s chr3           62109909 1035 + 160039680 CAAACTGGCTACATAAACA--AGACCCAACATTTTGCTGCTTACAGGAAACACATCTCA------GAGAAAAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGG-GAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAAC-AGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTAT------TCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAG
s HiC_scaffold_1 29924627  969 - 233722169 CAGAATGGATTCAAAAGTATGAAATTCAACTATATTTTACCTATTGGAGACATACCTCATCCAAAATAAGAAGGATGGAAA-----TGAAAATTagaggatgaaaaacagtattt-----gaCTAGAGCCCGAAAACAAGCAG--------ACCTCAA-----GACACAGatgacttcaagccaaaactgatcagaagagacaaaaacgAGCACTTCAGATT--GtgaagaaacaattcaacaggaagagatagcA--TTAGAATGCTTATGATTGTTGCACATCagc-------tttataaaacaaaaact--cagatTTAAAAGGACAGATAGC-CACAACACAGTCATAGTAGTGGAACCTTGGTGCCCATCTTTTTCAATTAGATAGGTCAGCCAGACCAAAAAATCAACCAAGAAACATCAGAGTTAAAccacacctttgaacaaatggacttaata---ctCTAT-GCACGTTTCATCCAACAATAAtagaacacacatttttctcagcagaacatgaaactttttccaaaatagagcATATCTTAGGCCATAaagcatgtttaaataaatgtagaagAACTAAAACAATCCCTTGCATACTATCAG-TTAAGAAGTAGAAAG--tagaaatcaacagcagaaaaagcCA-CAGAAACTATACAAACACCTGGAgattaaatattacattattgaataatcagtggatcatagaagaaattaggaaagtaataaaaaattcgTAGAATC--AAATGACAGTGGACAGAAAACATACCAAAACTCATGGGACACAATGAAGGCAGTTCTAAGAGAGAAGTTTATAGCTGTAAAAGCATATGTTAAAAAAAgagtgattctaaatac------cctaatGATAC-------AGCTCAAGAACAATGAAA------------AGCTgaaactaacagaaaaaaattagaaagagcagagaaaacatcaatgaaattgagactaaaagtAATATAGATGCTCagtgaatca----------gagttggttctttgaaaggctGGAAAAG

a score=15800
s chr3            62109971 1190 + 160039680 AAAGATAGACACTACCTCAGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACT-TTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTT--ATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAA-------ACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATT--AAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCC-------TCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCCT------------------------------------CAACAAAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGAT-ACAGGTACCAAAGTTGAATCAGGATCAAGT-TGACCTTCTAAACAGTCCCATATCCCCTAAAGAAatagaagca
s HiC_scaffold_1 202321554 1131 - 233722169 aaagacatACA--GACTGAAATGGAAAGTAttggaaattatatttcaaaCAAATGG----AAATCTAAAGCAGAAGTA----TACCTATATCTTATGAAGCAGACTTTAAGACAAAAACTATTAA----GACAAAGTCATATATAAAG-----ATCAAGGGATCAGTTCAACAGGTAGATAGAT-GATTGTAAATCTAGATGCATCTTATGTTGGAG-AACCTAATTTAT-AAGCAAACACTGCTAGatctaaagggaaaaatagattcTAATATAATAATAGCAGAGGACTTCAACATCCTACTCTTGATCAGTGGGCAGATCATTCTGACAAAAA-------GGGcaataaaacagttaaaaaaatttttatagattaaaTGAATTTAACAGATACTTGCAGAACATTTCATCCAACAGCTGAACAATATACGTTCTTTTCATCAGTGCACTGAACTTTCTCTAGATAGACATACTGTCC------------ATAAAACAGGgcttgacaaaataaaaaa-attgaaataatatccTGTATCTTTTCTAATCACAATG---GAAG--------TCAATAACCAAAGAAGATTGTACAAATT--ATGAT-ACATGAACACTGAATAAATTTTGAACAAACAATA-------CAACAATGAAatcaaatgtgaaatttaaaaatatgtcaaaat-------gaagatgaaaacaCAATATGCCCAAACTTATGgaatacaataaaaacaatactagTAGGGAAGTGTTTGGCAGTAAGtgcctatattttttaaaaataaat-------------ttcaaatgaacCAGTAATGTATCTCAAGGATTTTGAAGGCAAGAAgaaagt----caaaagagaaaaaaagaaagactagaacaaaaataaatagggactttaa--------aagtataaattactAATGAAACAGTTG--------------TGGTTTGTTTGAAATATAAACA------ACCAACTTTTAACTGAACTAATCGGAAAA-AAAGAGGTAAgatccaaataaataaaaccacagtTGAAAAGGGAGAGATTAAGACAAATcctacagaaatacaaagaattactAGGGATTTTTATTGAAAACCAAATTGGAAAAgctaatagaaatagaaaattttctggACATGTGAAACCTACCAAAAATGAAAGATGAGGACGTACAAAATCTTGAACCAGCCAATAACAAGTAATGAAATGGAATCA

a score=31259
s chr3            62109989 2553 + 160039680 AGAATGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTATGAAGAAACAAGCTGGAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGT-------AAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACC--CAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCC-----AAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAG---CAAATTC-ACCCAAGAGGAGTAGACGGCAGG--AAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAA---TCAACAAGATA---------GATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAA-----------------AATCC---TAATT---------AACAAAATCAGGTCTGAAAA---GGGAGACATAACAACAGATCCTCAACAAAAC-----TGGAAAACCTGGACAAAATGGAA------------AAATTTCTGGACAGATACAGGTACC------AAAGTTGAATCAGGATCAAGTTGACC--------------------------------TTCTAAACAGTCCCA-----------------------TATCCCCTAAA-----GAAataga-----------------------------------agcacttcaaatctct------------gaagaaagaaat-taaagaagatctcagaagatggaaggatct--cccatgctcatg-gattggcaggatcaacattgtaa----------aaatggct--atc-----gtgccaaaagcaatcaacagattcaatgcaatcccc-----------atcaaaa------------------ttccaac----------tcaattcttcaacgaattag--aaggagca--atttgcaaattcatctggaataacaaaaaacctagga------------------------------tatcaaaaaatcttctcaaggat-aaaagaacctctg------gtagaatcaccatgtctgac---------------------------ctaaagctttactacaga------gcaattgtgataaaaactgcatggcactggtatagagacagacaagtag--accaatggaatagaattgaagacccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctggcacaactggttgttatcatgtagaagaatgcaaatcgatccatacttatctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataaaaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaaattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgggaaaggatctttacctatcctaaatcagataggggactaatatccaacatatataaagaactcaagaaggtg-gacttcagaaaatcaaataaccccattaaaaaatggggctcagaactgaacaaagaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgt-----------ggagaaagaggaacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctgggcatatatccagaaga-----------tgccccaactggtaagaaggacacatgctccactatcttcatagcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatggagtactactcagctattaaaaagaatgaatttatgaaatttctagg
s HiC_scaffold_1 182585348 2737 - 233722169 aaaatcaaagaatggaaaatgatttt------atatgtcATGACCGGA-AAGGAAAAGTagcaatcttatttttaaaca-----gaCTTCAAACTCAAACTGATCAGAAGCAGCAcaggaggtcactacatactggttaggaaaacaattcaacaggaagagataacaaatgtaaatatatatgcaccaactaccagtgcacccaactttataaaacaaacctGAATGGGcataaaagatcaaa-caaacaTCA------ACACAATTATAGTGTCAGACCTCAGTAcaccactgtcacaaacagattGACTAGAAAAAC--------------------TCAAAGCTGATCAACATCGTTAGCCAAATAGACTTAATAAATATCTACAGAGCTGTCTATCCTAATACAAAAGAATATAA---CTTCTCAGCAGTATGTGAAACTtcctccaaaataaaccacat-cTAACCCATAAATCTTGCTTAAACAAA-TCAAGAGAATTAAAATTACCCCATATATACTATTAAATCATGAtgtaatgaaactagaaatcaatgacaaatgaAGCT-ACAGAAATTTTCCAAATATCTGtatattaaataatacactcctgaataCTCAGTGCGtcccagaagaaatcaaggaaaaa------------ttaaacattgaa-------------aCAATTTATCATCGGACCTGTGGGACACAGTGAGAGCA----------GGAAGTTC-------------CCTCCTGTTAAATCATAATTTAGATAAATTAGATA-----AGCCTTATGATGCACCTAACTGTCCTAGAAAAATGAACAGTTCAAACTCAAATCTGGTGAAAgaaatcatagaacaaattaataaaatcatataacaaattaataaaacagagaccaaagaa---atgcaaagag------gaccagggatttagGTTAGCAGCTAAATCCTCAACAAGGTACTGACAGAGTGCAAACAACAAAACAGGC-AATCCGGGGATACaaagatgattcaacatatgcaaattaatcaAGGTAATTTATCACATAAACCAAAGCAAGGGCAAAAATCCTGCAATCACcttgatagatgcagaaaaagcctttgataaaaactctgaagaaaatagaaagagaaggatatagatttataagaaaatatagatatatagaagaaaatagatacagatacaggTTGCCCAAACCTAATAGAAACTATTTATGATATGTctattgtaaa-agttatattaaacggggaaaagctgaaagctatcctttaaaatcaggaacaagacaaggatgcccactatcaccactcctgttcaatatagtatgTTAACATTCTctagacaagagaaaagaaaaaaataaaaaggatgtgtataaggaaggaagaaattgaattaTTGTTATGTGACAGATAACATGATCTTTGCCATAGAAGATCCAAATAACTCCATCAAAAGATTCTATAATTAATGATCAAATTCA--GTAATTTacaagaatataaaatcaaaacataaaaaaagaaaagctttcctGCATGCTCATAATGAACTTATCAAGAACCTAGGAAAggaataccattcacaatagcattaaaaaaaattgaaaacttagaAATGAACCTAATGAAAGAAGTTAAAGATCTTTACTAAGAAAACTACgaaagattgaagaggacatcagaaaaatggaaaggtaCCACAGTTGATGGATAGCCAAACCAATCTTGTCAAataccaaaactgttatatagatctaatgcaatcctaatcaaaatcaATAGTAatcctcacagaattagaaaaaaaaatactactctaaaatttttatggaaCCAAAAGCGACCCAGAATA---GTGGAAAC--AATTCTGAACAAG-----------CATATCCTGGAGGAAAAATAGCATCTTTAGCAATTGATGCTGGAAT-ATTGACTATTCACATGTGGAAAATTAAATCTAGACCCAAATATCCCAGCATGTAATAaggtaaaatcaaaacagatcaaaggcGT--AATTAAAAC---AAATGCTAGATAgcctagaagataaaatagataaaactatgAAAGTCATAGGCACAGGAAAGAATTTTCT------GTACACCAgttacacaagaaataacatcaagaatcaataaat---atttcatagaattttaaa---tCTCTATAGCAAAGGAAACAGTCAATAGAGTGAATAGACAGCTtacagaacaagaaaaagattttGCTAACTAAACCTCTAACAAAGGGCtagtatctaaaatatacaaagaactcaacaAAATGAGACTCCACCAAA-----------CATAAAACAAT---GTTCAGAAATGAATAGACGcttctca---gaagaattacaaa-ggccaaaaaatacatgaaaaaaagttcaccCTCTATGGCCATCAGGCAAGtgcatattaaaacaacactgagataatatcttactccaggaagaataactatcatcaagaattcaaacaataacaagtgctgttgttattgtttgacttcttgagggaaaagggaacccttctccatgGGTTGTGGGACTATAAACTAGTACAGCCCCAATGGAAATAAGCATGGAGTTTCCTcccaaaactaaaaccaaaaatctCATTTGGTATagcttttccctttctgtttgtcttctcagaagaactgaatacATTAcatca--tggt--ggtgcacacacaC-CCGGGATTATTGCATCAAAACTCATAataacagctaaatcctggaagtggCCTCTATGGCCATCAGCagacaaagagataaagaaaaagtggTGTTTATAC-CAAAAAAGtgctgctctgccataaagaaggataaatctgagtcatttaaagg

a score=17429
s chr3            62109993 1032 + 160039680 TGAAAGGCTGGAAAACAA-----TTTTCCAAGCAAATGGTATGAAGAAACAAGCTG---GAGTAGCCATCCTAATATCTGATAAGATTGACTTCGAACCCAAAGTCATCAAAAAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTC--ACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGG----TAACAAAA----CAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAA----AAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAA-AGGAAGCAAATTCACCCAAGAGG---AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAAC-GAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGAC
s HiC_scaffold_1 181954364  999 - 233722169 TAAAgggctggaaaaagaaaagatacactaCACAAGTGGAAACTAAAAGCCAGCAGCAGGAAGAGCTAACCTCATAGCAGGTAAGGCAGACTTcaagt--aaaacatttaaatgagACA--GAGGGTTACCGTAGACTGATAACATTATCAATGCACCAAGAAGATAGAACAATTTT----ATATATGTGCCAACCACAGGGCCACCCAAATATGTAAGCAAA----TATGAGAtctaaaaagagacagagagaccccAAAACAGTAATTGTTGAGGACTCCAGTGC-CCACTTCCTGTAATGAACAGAtcatccagacagaaaatcaacaaagaaacatctGTGTTGAATCACACTGTAGAATAAATGGACCTAACAGACATCTGCAGAACATTTTATCCAACAGCAGCAGAGTATACATTCTCATCAGCA---CGTGGAACATTCTAAAAGATAGATCATA-AATAGAACTTTAATAAAAACACCAAGTCTCAATAAACGTGAAAAAACTGAAGTGCTATCATGTAACTTGTTAGATCA-CATGGA---------------AACAACTACAAATTCCTAGTAATTGAAAGTACGAATAcgtatggaaattgaataaca-tgtTCTATATGACCTATGgataatttaagaaattaaaaattgaagaaatctctggaaag-----aaatgaaaatgtcagCATAACGTATCAAAACCTGTAGAACACAGCTAAAGCTGTACTGAGAGGAAAATTGGAAGCAGTAAAATCATTCATTATGAAA---AAAAGGTCTTAAATAAACAACCTTACAGAGCACCTGAAGGATTTAGAAAAGTACAAACCAGAAGTA--CAAAAGGATTAATAGAGGGAAGGTAATAATGAAGATCAAGGCAGAGATATAtgaaatcaaaactaaaaacaatg---aaaagatcaGTGGTACAGAGTTGTTGGT------AAAGGATGagcaaaatagataaata--tagcTAGACT-GCTagccaagttaaaaaaaagatacaagt----aaAACCAGATATAAAAAGGGAGAC

a score=15973
s chr3           62110097 924 + 160039680 AAAGACAAGGAGGGGCACTTCGTTCTCATCAAAGGTAAAATCCTCCAGGAGGAACTCTCAATTCTGAATATCTATGCTCCAAATACAAGGGCAGCCACA--TTCATTAAAGA--AACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCA--TGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACT--CACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGC-----CACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGA--GTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTC-ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGG
s HiC_scaffold_1 67242780 867 - 233722169 AAATGTAAAGGAGGTTACTACATCCTAGTAAACCAAACAATTCAACAGgcagagataacaattataaatatatatgcaccaaacattgGTG-AGTctcaatttcataaaatataaactacagaaaaatataaGG-ACTGATAAACACCAACACAATCATAGTAGGAAACTTTAAGTC--CACTCTCACAAACAgacaggtcaactagacaaagaaa-tgaagaaagaaatatcagagttaaatCACATcattgaacaaatggactttacCTACATTTGCAGAACATTTCATTCAAAAACAACAGAATGTACCTTTTTCTGAGCacta------attttctccaaaaaagacCT-----------ATATATCATCCTCAAACAAATATGCAAGATTTGAAATAATCTCTTGTATATTATtggataatagaaaaataaaattagaaatcaacagTTAAGAAC--TCATAAAAA--CAATGCTAACATATGGAAATTCAATAACACAGTCTTGAATAATCAATAAGTCACAGA---------------------------TTCAGTTCCAAGAATCAAAAACATTAGCAACACAAAATACCAAAACCTATGGGACAGGACGAAAGCAGTTATAAGAGAGAAGTTTATAGCTGTAAATGTGCTATTTAGAAAAATAAGGTGATGACAAAT------AACCCAATAATGTATCTCAAGatattagaaaaacaagagcCATTCCTACCCAAAAcctgaagaaggaaagaagttatACGTGTCAGAATAGAAATTAAGGTAAttcagaccaaaacaa--------------aaacaaaaaaagagtagtTTCCTTGAAAGTATAAacaatacatataaatatttagccaaacttttcaaaagatagaaagaaaacgTTTATACAAATGCAATTAGAAATCAAAAagg

a score=7351
s chr3            62110188 543 + 160039680 CAGCCACATTCATTAAAGAAACTTTAGT-----AAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGC
s HiC_scaffold_1 175426176 472 - 233722169 CATCCAGATTTACAAAGCAAACACTATTGGGCTAAAG---AGAGAGCACAATGT-CCCAACACAGTAACAATGGATGACTTTCACATGCCACTTTCATCAATGAACACGTCATGCAAACCA----CAAAGAGCAACAAAC---ATCAGAGATAAACTGTACATCAAATGGATCTAAAGTGTA---ACAGAACATTTCATCCAACAGCTACAAAGCACACATTATTTTCATGAGGACATGGAACTATCTCTAATAGTA-------TATTGGTCACAAAACAAGCTT--AAAGAGTCAAAA--ATTGAAATCATATCCTGTTTTCT----GATCAC--------GAAGAGGAACTTC----------ATAAATTACACAAA---------TATGTGGAGACTAAGTGACATACTT-TTAATGGTGACATATCaagttaagaaattttaaaaattgttaaa-------------acaaATGAGAATGGAA--ATAACATATCAAAGTTTATG----ACAACAAAAGGAGTACAAAGGGGAGTTTTCATAGC

a score=6862
s chr3            62110193 309 + 160039680 ACATTCATTAAA------GAAACTTTAGTAAAGCTCAAAGCACACATTGCACTTCACACAATAATAGTGGGAGACTTCAACACACCACTTTCATCAATGGACAGATCATGGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATAC-CTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTA---ACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGT
s HiC_scaffold_1 207020789 300 - 233722169 ACATTAATCAAATATTAGGATACTTTAGGGGAGGATAGAGTCCA-----------ATACGGTAACAGTAGATAAATTTAACACCCCACTGTGAGCAATGGAGACATCATTCAGACAGAAAATCACCGAAGAAATAGCAGAGCTAAATTGAAGCGTAGATCAAACGGACCTAACAGGTATCTGTGAAACATTACATTGAGCAACTGCAGAATACACTCTTCTTGTGAGCA---CATGGACTATTCTCCAGGA-----TAAATAGTGGCAAACTACAAAACAATTCTGAATCAATTTTGAAACACTGAAATCATACCAAGT

a score=14007
s chr3            62110296 520 + 160039680 GGAAACAGAAACTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAA------GCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAA
s HiC_scaffold_1 127275207 515 - 233722169 ggaaaaagacaaaaaaaaaaaaaaaaattaaagcaataacaGC-ATTGatcaaatggacttaacagataGCTACAGAGAATGTCATTAAATGACAACAGAATACACAATTTTCTCAGTAGCACATGGAACTcattccaaaatagaccacattttAGATCATAAAGAAtatctaaataaatacaaaagaatttaaataatcttCTGCATATTATTAAATcataacagaataaagctaaaaatcaatag-gaaaataaaccacagaaattaCATGCCAACACAC----GAAGATCAAAGAGTACATTACTATATAATCAAtacatcacagaagaaatcagggaTGAAGTAAAGAAGCTTCTAGAATCAAATGGCAAAGGAAGC-ACAACATGCCAAAATGTATGGGACACAATGAATGTAACACCAAGAAGGGAGTTTATAGTTGTGAGTATATACAATAAAA----GAAGTGAGCAATCCCAAGTAACTTAATGATGCATTTtaagttcctagaaaaacaagaacaa

a score=15888
s chr3           62110307 907 + 160039680 CTAAACAGGGACACACTGAAACTAACAGAAGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCA----CCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCA---CAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCA-CCCAAGAGGAGTAGACGGCAGGAA--------ATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAG----GGCACAGGGACAAAATCCT--AATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCC--------------TCAACA-----------------------------AAACTGGAAAACCTGGACAAAATGGAAAAATTTCTGGACAGATAC-AGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAatagaag---cacttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaggatc
s HiC_scaffold_1 97120739 921 - 233722169 ctaaaagaaaacccactagaA------------ATACAGCAAATGGATGTGGTAGATGTCTGCAGAATGTTCTATCCTAcaaaatcaaaatacacattcttctctgctgcTTATAAGACAGTCTCCAAATTAGAACACATACTAGCTTatagagcatgcttaagtaagtgaaaaggaattgaaattatctcatgcgtATCATCAGACCAAGCATAGTGCAATGAATTgga--------aatcaaaagaaatcacatatTTCATAAACACATGC---AATTCAACAATGACCTCCTGAATAATCATAGGGTCTCaggtgaaatttaagaaaaagttaGACAGTTTTACCATT------------AAGGCCAATGCAACATACAAGAACTTATGGGGCACAATGAAATCAGTCCTATGAGAGAAATTCATAGCACTGAATACCCAagtcaagaaaacagagcaagctcaaataaacaacttaacgCTAAAACTCAAGTTTccagaaaa---ggagcaagtcaagcccaatgtTTGTACAGTGAAGGAACATTAGAGATATTGAAGCAGAATAATG----CAACAAAG-----ATTAGGAAAACTATATAAAGAATCAGTAGATTGAATAGTTAATActttgacagattaaataaaactgataaactctTAGACAAccttctcaaaaaaacaaaagaggaaaaaaatcctcaaatctatgcaattagtaatgaaaagaatgaaatcacaatACTTTCTGCAGAAATGTAAGTCAACAATCTCTACTTCAAGAACCTGTgttctaataagatagaaaacacaaaagaaatggatagattcctagatacacatgagTTATCacagatgaataaagaagatataaaatttctaaataaaccaatgtcaatcagtgaaattgaagatacaattaaaaacct--------acaaacagagaaaagcccaggacctagAAGATTC

a score=6728
s chr3            62110336 739 + 160039680 AGTTATGAAACAAATGGACCTGACAGATATCTACAGAACATTTTATC--CTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAAAGCCAACACTCACGTGGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAA----AGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCACAACGTACCCAAACCTTTGGGACAC--AATGAAAGCATTTCTAAGAGGGAAA-------CTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATAC---TAGCAG--CTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATT------------CACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAAC-------AAGAAGAACTATTCGAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAGAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGATCCTCAACAAAACTGGAAAACCTGGACAAAATGGAAAAA
s HiC_scaffold_1 196021377 727 - 233722169 AACTATACTACAACTAGAGGTAACCAACATTTATAGACCATTCCAACAACGAGAGCAAAA---TGTATGCTCCTCTCAGGCAGACATGGAACTTTCTCAAAAATACACCATATGTTAGGCCACAAAACAAGCCCTAACAAATTTAAAAGGATTGAAatcatgcaa-ataaaattttgaaacataaagGAATTAAATTGGAAGTCAACAACAGAAAGAGA-GTTAGGAAATTCACAGGCatacagaaatt-aacagaa----gCCCAAGTAAACAATGATTCAAAAAGTAATAGTGAATATTAGAAACACA------TTCAGAT--------GAAATGAAACCACAACATAAGAGCAACTATATGTCACTGAATTAGATAAtttagatgaaataaaaaatatttctataaagaCACATTTACCTAAAATGACTCAAAAAGGATTAAATGCTCATAGCAGGCCTCAACCCAATAACCTAGTATTTcagaataaggaatgaaaaatagaataatagcGAGCTAAAGTAACATAAGCAGcagaaaagaactaaaaattatattgaaaataaatgacagaaaattattaaaaagaagag------agaatattAAGGAAAGTAAAAATTGAACCTTTTAGAAGAACCACACAATGGACAATTTTTAAGCTAGATTTAGCTCGAGAAAAACAGTTAAGATTCAGGTTATTAAGATCAAG--------------AATAACAAAGGGTTATC------ACTGGTAAGtttgaa-gaaatagaagaa

a score=5377
s chr3            62110339 214 + 160039680 TATGAAACAAATGGACCTGACAGATAT------------------------CTACAG-----------AACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAA
s HiC_scaffold_1 102006800 249 - 233722169 TGTAGAGCAAATGGACCTAACAGGTAgagtacatacatacatacatacatattacaGGGAATGCTGTAAATATTCCAtccaatagaagcagaaaaatcaGTCTTTTAAAGCCCTTTAGGAACATTTTCCAGGATAGAACACATGTTAGGTCACAAAACAAGTCTTAACAAACTGAAAATGTCTAAAATCACACCAAGTATCTTTTCCAACCACAatggaataaaattagaaattaataacagaaagaaa

a score=3999
s chr3            62110356 136 + 160039680 TGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAAT
s HiC_scaffold_1 216284955 136 - 233722169 TGATACCTATCTCTAGAACATTACTGGCAGCAACTGAAGAATGTCTATTCCTCTCAAGTGCACATGGTACTTTTACCAAGACAGATGGTATGCTAGGATATAAAATAAGTCTCAGTACATTTTTAAGTACTGAAAT

a score=14281
s chr3           62110358 679 + 160039680 ACAGATATCTACAGAACATTTTATCCTAAAACAAA--AGGATATACCTTCTTCTCAGCACCTCATGGTACCTTCTCCAAAACTGACCACATAATAGGT-AACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTGATCTTCAATAACAAAAAAAAATAATAGAA--AGCCAACACTCACGTGGAAACTGAACAACA--CTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCA-----CAACGTACCCAAACCTTT-GGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGG--AGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCGAAGAATTAACCAAACGAG--GAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCATTAGCTAGACTCATTAG---AGGGCACAGGGACAAAATCCTAATTAACAAAATCAGGTCTGAAAAGGGAGACATAACAACAGAT
s HiC_scaffold_1 72283543 667 - 233722169 ACAAATTTCTAAATATCATCCTTCACTAAAACAAATCAGGGCATACT-----------AAAACATGG--CTGGTTCCAGAAC------AAGAGTAGGTCAATAAAACAAGcttaagaagatgtaaaagaattgaaattataccatgtatatttttatatcctaCAGCAATAAAGTTAGAAAtcaattacaaaagaaaacacaaaaattatccAATGC----ATGAAAACTAAACAATAAGCTCTTCTTCAAGGGATTAgag---aagaagaaatcaaagaagatgtTAAGAC------AGTTTCTAGAACTAAATGATGATTGCAGTAAACATAATCAGAATTTAAGGGACACAACAAAAGCAGTTCTAAGTGGGAAGCTTATAGCTGTAAATGCCCACATGAGAAAAGCAgagcaagcccaaataaataacctaacaaTGCTcttcaagctcctagaaaaacaagaacaattcaaACTCAAAAGTCATCAAAAGGGAGGAAAACATAAGGGTTAgatcagaaatcaatgaaattgagaccaaaaaaaaaaaaaaaaaaaaaaattcaatgaacCGAGTtaattcttcaaaagaataaacaaaacagacaaaccctTTGCCAAGCTCATCAatgtaaagcagaaaaaaaagacccaaatcaacacaattagaaataaaaacggtgaaatcaaaatggat

a score=8118
s chr3            62110424 464 + 160039680 ACCTTCTCCAAAACTG-ACCACATAATAGGTAACAAAACAGACCTCAACAGATTCAAAAATATTGAAATTGTCCCATGTATCCTATCAGATCACCATGCACTAAGGCTG-ATCTTCAATAACAAAAAAAAATAATAGAAA---GCCAACACTCACGTGGAAAC-----TGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAATTCTTTTTAGATTTTAGAAGAAAAAGAAGCCA---CAACGTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACGGAAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAA
s HiC_scaffold_1 135153238 439 - 233722169 ACTTTCtccaaaattttgccaaatactAACCCATAAAGCacacttaaataaatacaaag---------ttatCTGATATAT----GAAaatcatagtacaatgaaactggaaaccCAATTGCAGAAGAAA-CAACAGAATTATGTAAACACATGGATATAAACATacttgaataa--------tcaatga-------gtcatgggagaaataaaggaagaaagtagATAATT----GcattaataaaatgataatgcCATTTCAACATACCAGAGCCTATGGGGCACAATGAAATCAGTCCTAAGAGGGAGATTTATAGCTACAAATGCCTACACCAGAAAAATATGgaaagcccaaataaataacctaatgaaaCATCTaatatccaacataagaacaagGCAAAT----CCAAAGCTAGTA-CTGGATGGAACTTACAAAGATCAGTGTAGATGTTAataaaattgagattaaaa

a score=3724
s chr3           62383731 81 + 160039680 TGCTCCTGTACTGCTGGCAGCAATGTATGTTTGTTTACATCAGCGTCACCATACACACACGAGCACAGCATGGTTCTGCGA
s HiC_scaffold_1 26553978 81 - 233722169 TGCTTTTATACTACTGGCAGTGCAGTAGGTTTGTTTACATGGGCATCACCACAAATATAGGAGACAGGCATTGTGCTGTGA

a score=7421
s chr3            62425502 310 + 160039680 TAGCTTGGTTCTCTGAGCTTTCAAAGTTATATGTACACACTGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACATTT------TGAAAGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATA-ATTTTGTGCACACA------------GAAGTTTCAT-------GGTGTACAGTTTTCCATTTGTGGTA--AGCCTGACAGTCA-AAACTTTTGTATTTTTAAAGATTTAGGATC
s HiC_scaffold_1 112013957 332 - 233722169 TAGTTTGGAATTTTGAAATGT-AAGCTTA---GTACAGATTGAATATCCCTTATTTGAAATTTTTGGACCCAGAAGTGTttcaaatttcattgtttttggatTCTAGAATATTTGTA---ACATAATGGGATATCTTCAAGATGAGACCCAAGACTAAATACGAAATTCATTGATGTTTTATATACACCTTATATACACATTCTGAAGGTgattttatgcaatattttttatgtacTTATATTTTGCTTGTGAAGTCATATAAGATCAGTTGTGGAATTTTCCACATATGGTGTCATGTTGGCAGCTACAAAATTATGGATTTTGGATCATTTTGGatc

a score=6767
s chr3            62425535 286 + 160039680 TACACACTGAGTGTTTCTTATTATCAATGCCTACAGTGAGATGTGTTTTACATTTTGAA------AGATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTT-GTGCA-----------------------CACAGAAGTTTCATGGTGTACAGTTTTCCATTTGTGGTA--AGCCTGACAGTCAAAACTTTTGTATTTTTAAAGATTTAG-GATCATATTTTCA
s HiC_scaffold_1 167387403 316 - 233722169 TACAGGTTAAATATCCTTTATCCTAACTGTTTGGAACcacaaatatttcagattttagattttttaatttttttaatatttgcaaatatgCAATGAGGTATCTTGGAGATGGAAGCCAAGTCTAAGTATAAAATTGATTTATGTTTCAAATATACTTTATACATATAGCCCACAAGTAGTT-TATACAATGTTTTTAGTGCATTTGCATTTTGACAACAACCCATCACATGAGGTCA--GGTGCGAAATTTTCCAATTGGGGCATCATGTTCATACTTAAATATTTTGGAGTTTTGAGTATGTAGAGCTTGGATTTTCA

a score=5730
s chr3            62425596 838 + 160039680 ATTTTGGAGTATTTTCATATATATGATGAGGTATCATGGGAATAGAACCCAAATCTAAATATGAAATTCATTGGTGTTTCAAGCATAGCTTGTATACATATTCTAAAGATAGTTATATCTAATAATTTTGTGCAC-----------------------ACAGAAGTTTCATGGTGTACAGTTTTCCATTTGTGGT---------AAGCCTGACAGTCAAAACTTTTGTATTTTTAAAGATTTAGGAT-CATATTTTCATATTTTAGACATTC-ATATTTCAGCTTACCTTTAATGGATCTTCAGAGTAAC-TTCTCC------TTTGTTGGGAGCTGACAGTATGTTTGGCATTTAGATAAGATGCACAGATCTCTTACCATTTAACTCTTGGAACAGGGCTGGGAGGTGGCTCTGAAGAGCACCTGTTCAGCAGGGGCGAGGCCAGGTTGGATCCCTGCACAGGAAACAGAATAAGATAAGCATCAGCCTCTTGCAATAGCCTGTTTTATACCTGCCATTGCCGAAGTTTGCAGAGGAGGAAAGTGATGTTTATCTACAACCAACCACATGCCCATGGGTAAATCCCTAGCATAAG-GCAGGTCTGAGATTTGTCAGCCTACCTACTGACCTCTGAGTCTTCCTCGGTATTTAGGCTCTATTTATTTA-----AAGAATACTTCCTAGTTTTTTTTAATttttg----tcttgttttgttttgttcttgttgttttgGttttatttttttgaga-------------cagggtttctctgtatagcccttgctgtcctggaactcactttgtagaccaggctggcctcgaact--cagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcatgcaccaccacgcccggctTAC
s HiC_scaffold_1 200746705 785 - 233722169 attttgaaCTATTGTCATATACATAATGTGACATCATGGGGACAGGATCTAAGTCTAAATACAAAGTTCATTTGCTTCATGGACCTGAATGGAACACACGGCCTGAATGTA-----ACTTTACACTGCTGTGTACCTCCGTCTTGACTGCAATGCATTACATGAGctca--ggtgtggaattttccacttgcaGTGTCATGCTAGTGTTTGA-AATCTCAGATTTTGCAGTATTTCAGATTTATGTTATGAATACTCAACCTGtgtgcatttaatatttttga-tgctTGTGATAG---TTGTAGGTAACATTCTCCAGCCCGTTTTGTGGAATTT-----TATGTCAGTATTCTAGGTTTAAAGTACATTTCTCT---------------------------ACAGGTGACTTATATTTGCTCCT-TCCAGC--------------------TTCTTGAAGCTACTACCAGGCAAGAGTGACTTTACATTTTTGGGAT-GAGTGTCCC-TACCTAC-----CCTAAAATCACAG-------AACTGATGTGAACTC-------------TGCCCTTAAA-------CTAGGATAAGAACAAGGCTGATATGTATCATTGGGGATGATTTCCT-------TTCCCCA--ACCTGCACCCTTTTCATCCAGAGCCAAGCACATACCCCA----CTACTAAACTCTGAGGACCTGATTAAATTCTTAGCtcgt-------gttttttctttttgcgaGGGGGGGGGGTcctagggtctcactatgaagttcaggttggccttgagctcactttgtattccaggctggtcttgaatttgcaacaatcctcctgccttagcctcctgagtgctgggattatatgcattTGCCTCCACGCTTAGGTAAC

a score=5592
s chr3           62477515 146 + 160039680 ACAAAGGGATCTTTAAAGCTGAGACTGGCAGCAATGGTGAGAACTGGATCTAAGCAGCAGAACAAAGCTCCAAAGAGAATCATTTTTCCAATATGTGGCTCAACAGGCAGTCGGGCTAAATGGACACCAAGAGGTGTTAATTCTTC
s HiC_scaffold_1 23385529 146 - 233722169 ACAAAAGGAGACTTAAAGGCCAAACTAGCAGCAATGGTGAGTGCAGGGTCCAAACAACGGAAGATAGACCCAAAAAGCATCAGTTTGCCGATTCTCACGTCCACGGGCAGAGAGGCCAAGTGGTACCCTAGAGGGGTCAACTTCTC

a score=8463
s chr3           63273083 203 + 160039680 TCCTCCCATGCTGCACTGCTTCAATTTACCTTGATTTGATTTAATTTTAATGAATCCTAGGCATAAGACAGCTTTGGCCATTAAGCTAAGTATTAAGCTGGGATGAACAAAAGACAGCCGTGTGCTCTGCCCCTGCCTCATATAAGAGCAACACCAACAACAAGGTATCTTTTTGCCTATTGCCA--GGGGTTTTCTTGTTTGTT
s HiC_scaffold_1 37912058 198 - 233722169 tcctccctttttgctcttatt------gcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGgggtctttttgcttttt

a score=4407
s chr3           63541325 141 + 160039680 ttaatctcagttcttcagtttcctcagctttaa-----------------aatggaactaataataataAGGCAGATGTGTGTCA----ATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTT
s HiC_scaffold_1 23647505 157 - 233722169 TTAACAccattctttctgtttctttgaatttgACTATTCTAGATAACTCAAATAGAACCACT-----CTGGACAGTCATGTGTCACCTAAAGACAGGGAGGTGTTCTGGGAAATATGTTGTTGGGCAATTTTGTCATTGTTCAAACATCACAGAGTATACTT

a score=3864
s chr3           63541366 101 + 160039680 taataataataAGGCAGATGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTA
s HiC_scaffold_1 31634571 101 - 233722169 taataaattaaatatagttGTCGCTTAACAACGGGTATAAATTCTAAGGAATGTGTTGTCAGGCAATTTTGTCATTATGCAAACATCGTCGAGCATACTTA

a score=3740
s chr3            63541377 100 + 160039680 AGGCAGATGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACCATCCTA
s HiC_scaffold_1 167441815 100 - 233722169 AGTCATGCATGGCTTAATGACAGGGATATATACAGAGAAATGTGCCACAAGGTAGTTTCATCACTGTATGAACATCACAGCATGCATTTATATGAACCTA

a score=4803
s chr3            63541379 124 + 160039680 GCAGATGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCAT--AGGGTATATTTATACCATCCTACACTA------TCAATCACTGGGTGGAACCAA
s HiC_scaffold_1 157979347 128 - 233722169 GCAGTTGTG-GTCAGTGG---GGATGTGTTCTGAGAAACGAACTGTTAGGCGATTTTTTCATTGTGCAAACATCATGGAGAGTACGCTTGCACAAACCTAGATGATATAGGTCAATCACTTGATGCAATCAA

a score=4492
s chr3           63541380 90 + 160039680 CAGATGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATAC
s HiC_scaffold_1 93618317 90 - 233722169 CATGTGTCCGTTAATGACAGGGTTGTGTTCTGAGCAGTGCATTTTTAGACAGTTTTGTCACTGTGCTAATATGACAGAGTATGCTTACAC

a score=3983
s chr3           63541383 88 + 160039680 ATGTGTGTCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACC
s HiC_scaffold_1 22821755 88 - 233722169 ATGTTTGCTATTGACAAGGATGTGTCCCGAGGAATGGGTCATTGGGCAGTTTCATCACTGTGCAACCACCATAGAGTATCCTTAAACC

a score=3738
s chr3            63541390 146 + 160039680 TCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACCATCCTACACTA----TCAATCACTGGGTGGAA-CCAATGCTAAGGAAGAACAAGACTTTGTCCTTATTTT
s HiC_scaffold_1 167443044 138 - 233722169 TTAACAATGAGGATGCTTTCTGAGAAATGCAGCATTAGGCAATTTCATCATTGTGCAAACATTGTAAAG--CGCTTACACAAACCTGGATCACACCTCAGCCATATGGTGTACTCTGATTTtaag-----------ctttgttctttttct

a score=4700
s chr3           63541390 111 + 160039680 TCAATAATAAGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACCATCCTACACTATCAATCACTGGGTGGAACC
s HiC_scaffold_1 53412114 108 - 233722169 TTAATGACAAGGACACATTCTGAGAACTGCATTGTTAGGTGATTTTGTCATTGTGCTACTCTCATGGAGTATACTTACACACACCTA---GGTCAGTCACTGCGTGTGACC

a score=4041
s chr3            63541399 153 + 160039680 AGGATCTGTTCTGAGCAATGCTCTGTTAGGCAATTTTGTCATTGTGTGAACATCATAGGGTATATTTATACC-------ATCCTACACTATCAATCACTGGGTGGAACCAATGCTAAGGAAGAACAAGACTTTGTCCTTATTTTCAGAATACCATTCCGT
s HiC_scaffold_1 212320024 151 - 233722169 AGGATATATTCTAGGAAATGCACCATCAAGCAATGTCATTATTGTGTGAACATTTTAGAGTATCTTTACACAAAGTAAGATGCTGCAATACCATTAAC------AATAcaatctaaagaataaacatga-ttTGTCATTG--ACCAAAATGTCATTATGT

a score=3678
s chr3            63744514 91 + 160039680 ACAACATCTCTGAAGAGAATTTTTGAAGTGAGAGTATAACCATGGTGGACCACTGGCTCTCCATCTGGGCCATCCCAACAGTCAACTGCCA
s HiC_scaffold_1 233541928 91 - 233722169 ACAACATCTTTGAACGGGATGCGGGAGGTCAGGGTGTGTCCATGGTAAACGATGGGTTCCCCATTAGGTCCATCCCAAACATCCACCTCCA

a score=4909
s chr3            63753192 107 + 160039680 AGCTGATCCCCAGTCAGGTATGTGTTGTGAGATGAAGCAATGTAGTAGTTGCACAGGGGCTGATCCATGTCTTGGTACACTTCATGGTGCAACGGGTTAAATACGTC
s HiC_scaffold_1 233543100 107 - 233722169 AGCTGGTCCCCCACTAGGTAGGTGTTGTGAGAGGAGTTAATGAAGTAGTGACTCAGAGGCTGAGTCATGTCCTGGTAGACAGGGAGGCAGACCGGGTTGAAGATGTC

a score=10241
s chr3            63843155 193 + 160039680 AGGTTTGTATGGTCTG-ATTAGTG----------CAAACAAGGTTTTCCCATGAAGCAAGTT-TCTTGACCCATGGCAGAATTCATCTGCTGTTGAGTAAGGGGCATTCTTGTTTTTAACCAAAAAGAACTGGAGAGGGGATGCATAAGACTGTTTAAAGATGCACTGTGTATGCCAATCTGAGTGTTCTTGACTTGGGTGTTAT
s HiC_scaffold_1 154206729 205 - 233722169 AGGGTTATGTGGTCCGGATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAGCAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTtggttattgt

a score=6904
s chr3            63843752 126 + 160039680 aTGGACAGATTCTAGTATGCCTTGGATGTTGGGGCCCAAAGTAGCTAGAAGGATCTGAAGGCTTTTC--------TAAAGAAGATTGTGTCCTTCAACATGTTGTCAGGAAGCCCTTAAACAAAGAAGGTAAGA
s HiC_scaffold_1 154207137 134 - 233722169 ATTGACTGATACTACTGTGCCTCGGCGCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGTAAAA

a score=6840
s chr3            63843870 169 + 160039680 AGGTAAGATGCCCAGGACCAAAGAATCCAAGATTCAGCATCTTATTTCTCCAC-TACCCTGTAACACAAAGGCCAACGTGTTGCTCTGAAAAAAAAAAAAAAATCACTAAAACAAACAAATAAATAGGATGGTGAAGTATGTGCTACAGTTTTGCCCAAGAGAATGAAGG
s HiC_scaffold_1 154208414 161 - 233722169 AGGTAAGAAACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCG-----tactaagaaaaac----aaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGG

a score=36552
s chr3           63905358 1167 + 160039680 CAGCAGTTCCT----GTGGTGGCAGTG----ACGGCTTGGCAGTGCGGCTCCTCTGTGACCCAC--------CCCGCGCTGCCACGATGCCCAAGAGGAAGGTTAGCGTGG---ATGGAGCGGCCAAGGCGGAGCCCAAGCGCCGCTCTGCCAGGCTGTCAGCCAAGCCCGCCCCTGCCAAGGTGGACGCAAAGCCGAAAAAGGCTGCGGGAAAGGATAAAGCATCAGACAAAAAAGTGCAGATAAAAGGGAAGAGGGGAGTGAAGGGCAAATAGGCTGATGTGGCTAACCAGCAAACCACAGAG-------CTACCTGCAGAAAATGGAGAGACAAAAACC-AGAGTCCAGCCTCTGA------AGAAGAGAAAGAAGCTAAGTCCGACTAAGCATCCATCAAGTCTGT-CAGTGGTCCC-ACCTCCCTTCTTGTACAATCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCGAGTTTTTTTTAGTATCTCTAGAAACATTTTTAAAAGGTGAGGGGATCCCACATCATCCCATTTTTTAAGTGTAAATGGTTTTCTTTCTAAGAGGTTAAATCATTTACTGGTTGTTTATTTTTTGGTGCAACCAGAAAATAGCAGGATACTGAATCAGGAGAGGCTGTGACTGTCTCGGGGGTCACCATAACA-TTCTGAAGAGGGGGCTAGTTTTATATCCTATAATACAAAGCATACTAAATGGCAATTTGGCGTCTCAGTCTTGCATT---CGTGTCTGGAATAGTTTCAGTTCTATCTGGTCCCGTGTTTGTAGTAGAACCATTTTGTAAGAAAGCCAGTCCTTGGCCCTTGCCCTGTCAGAACTGTG-----------ATGTCTGTGGTCGTGGCAGTCCA-TTTTCCTAACAGTTGTGATAATGTGCTGTGAAAGGTGGAAGTCCTGAGTCTGTTCTGTGTGTGGCGTAACATTGTGAATTGGTGGGCTGAGGATTACA-------GGCATTTGGCTGTTATGAGA---GGTCTTAG----GGAAATTTG---CCGAGTTTGAGG---CTGGAACATCACTGGAATAAGTTCCAGTAGCTCTTCATTTGTGTACATGAACAGTACGTGAGTTTGGGTACGTGAACACAGTATATGGCTCTTTTTGGGTACGTGTAATAAGATT-----------TGGAATGTCTGTACTCTGCTCCT-----CGACCAATAAAATCT--GTTGTGAAAGAGGAAAAAAAAAAAAA--AAGAAACC
s HiC_scaffold_1 23882000 1197 - 233722169 cagcAGTTCATTAAGGAAGTAGCAGCGGACAACTGCTCTGCCAGGATGTCCTGCCTTGGCCCTCAGCTTCTGCACACATCACCAACATGTCCATGCAGAAGGTCAGCTTGGCCAAAGGggcagcacaggaggagcccaggaggAGATGGGCGAGGCTG---GCTAAATCTGCTTCTGCAAAAGCGGA-ATGAAGCCAAAAAAGGTAGCGGGAAACGATAAATCTTCAGACAAAAAAATGCAAGCCAAAGCGAAAGGGAGAGCAAAGGGAGAACAAGCCGAAGTGGCTCATCAAGACACCTAGGAAGATTTATATACCTGCGGAAA-CGGAGAAATGAGAAGGGAGAGTGCAGCCTCTGCCGGAGCGGAAGAGAACAAAGCAGAGTCTGACTGACCACATAG-GTGTCTGTTCAGTGGCCCCTGGCTCCCTTCCTGTACAGCCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCAA--TTTTTTTAGTGGCTCtagcaacatttttaaaaag-aagggacTCCCACCTCAtcagattttcaaaatataaatgatttttttt---agagGTAAACTCATTCgctggttgtttattttttggcacAATCAGAAAGTAGTGGGATCCTGAGTTACGGCAGGCTTGGACTGTCCTGGGTGTCAGCTCAGCACCTCACAGGTGGGGGTTAGTTTTATATCCCAAGATAC-AAGCACACTAAATGGCAATCTGGAATCACAGTCATGCATTTAATGTGTCTTGGGTATTTTAAAT--GACTTGTTCCCATGTTTTTACtagaattgcttctttaaaaaactattttctgaTTGTTGCCCTCTCAGAATCGTGTGCACTTCGTAACATCTTTGGTCGTGGTAGTCCAGTTTGCCTAA---TTTTGTTAATGTGCTGTGAAAGACTGGAAATTTGAGCATGCAGTGTAGATGACATGAAATTGTGAATCAGTGAGACATAAGTAACACTTTATCAACGTTTGAAGATACTCGTACTTAATCTTGGTACTGAAAATCTGCCCCCAAATTTGAAGTCACTGGAAAGTCACTGGAATAA-------------------CGGAAAAAGAAACAATACGTGGCTT-------GTTAAAA---------------TTTTGGTACATGTGTTAAGAGTTGTGTACAAAGTGAAATGCCTGTA--CTGATCCTTAATACAACCAATAAAATCTCAAAtatggaagacaaaaaaaaaaagaattaaaaaatc

a score=4923
s chr3            63988986 140 + 160039680 TAAATATCCCCAATCTGAATGCCTGAA------ATTGTTCACAATCCAAAACTATTTGATTACTAACA-AATATCACAATT-GCAAATTCTATAAGTGTCTTCAAATGACAAGTGGTAGTCAAAATGCAAGTACACTTAAAATACTGT
s HiC_scaffold_1 201589895 148 - 233722169 TAATTATCACTAATCTAAAAATCTAAATGCTAAAGTGATCCTAAATCTGAAGTTTTTGAGCACTGAAATGATGCCACAAGTAGCAAATTTCACACCTGACCTCAGGTGACAAGTGACAGTCAAAATGTAGGCACACTGAAAATATTGT

a score=18107
s chr3            64012865 1037 + 160039680 CAGTGTTGAAGAAGGAGG----------ACTAGATTGAACCACCATAGTCTGTTTGCTTAGGAAAGCATGTCAGGCCACTGGATTCTCTTACACAGATGCCAACAAGAACACAGGG------TAGAGGAAGGAAACACTGATAGAGAATTTTGAGAATCCCA-GCAGTGGATCCTTGGACCAGGATTGGTCTCTGCTGGAATT-----GAGGGAGAAAAATGCAGATTTAATAGCTTATCTTTAACAAGGACACTAATggggctagagagatttctcagaggttaagagcagtgactgctcttccagaggtctttaattcaattcccagcaaccacatggtggctcacaaccatctgtaatggcatctgatgccctcttctggtgtgtctgaagatagtcacagtgtactcatatacagaaaataaataaataaatAAGGCCATTAATGAACAATAATCACTGTCT-ATTTATTACAAAAGTAATCACATGTCTTTTAGTCTTT--------ACCATGATGTTAT-----TTGTATATCAGCCTTCAATTCAGATCATGAAAAGCTTACAGAAAATTTCTTTTGGACAGTCCAGATTGAAGTAAAATTGGCTTTCAGTAAAGTGAATACAATCTTTCAA-----AGTAGTAATCCTACTTCCATAAATACTATCA-TGCTTCTGGTTGTAAGATAAA--GCTGGACTTATCTATTAATGCTCATGACATCAGAAATATGGAGGATGTGACCTGA----------AAGATTGGATTAATACTTAAATGATGTCAATAGTTAAAATAATATGCTTAGTAACCACTGAGG-AACTCTTAACTGTCTGAGCACCAAGCATGACTCTTGTGTGTGTCTGTTTATGATCACCAGCCTGTCACAGGCAGTAGTTAAGATGAGGTAGCATCTGTCTTTATTGTT---------TATGCCAATTTAATTAGCATTCCCTGAATTC--AAAGTGTTTCCTTTTGCTTACAGAAAGGCAGTTTAGTGTGGTTTATGTTATCAAAGAATTACTAAACATTATACTTAGTGTGGTACATATTATCAAGTAAAGGATACTATTTAACATTTCTTACC
s HiC_scaffold_1 227760702  835 - 233722169 cactgtagaGAAAGGAGGCAAGCACAAGACCAGACCAAATctccatggtctgtttg-ggaggAAGACAGGTCAGTCTCCTAGATTCTCTTACACAGATACCAACAAGAACAAAGGCATCACCTGGGGAGAGGATACACTGATGGAGGATTTGGAGAATCCCAAGAAATACATCCCtgaaacaaaaatgatttc-aCTGGCATCAAGAAGAGGGGAGAAAGGGCCGACTTAATAGCTTATCTCGAA-AAGGTTACTAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGTCACTGTCTTGTttattacagaacaga---aatgtcTTATGGCTTTTTTATGTGTACTATAATTTAATAGGTCTCATACACCAG-----AATTCAGGTTGTGAGTGGCTGGCAGAATATTTTTGTTTGACGGTCCTGATTTAAGTAAAATTGGCTTGTAGTTAAATGGATAT-TTTTTTCAAGCATTGATAGTAATTCCAGTTCAGTAAATACTatcactgtttttcctttctaaatacATTGTTGCACTTGATTAGTAATATTTGACTTTTCACAAAACTTAAGAATGTCATCTCAAAACCTACTGAAGattgattttatatttagatt-------tatttaa---------CTGATTAAATACTGGGGAAACCCTTTAT--TCTCAAAACCAAGCAAGACTCC--CTTGTTTCAATTTGTGCTTATTAGCCTGTTAAAGGGAGTGGTTGAAGACAAGGAGCA-ATGTCTATATTTTTGGTATCGACTATGCCAATTTAATTAGAATTCCCTGTATCTAGAAAGTGCTGCCTTTTACTTACTGAAAGGCATTTTACCGTGGTGTATGT--------------------------------------ATAATaccaaataaagaa---tatttaacatttctCACC

a score=5275
s chr3           64013626 281 + 160039680 TAACCACTGAGGAACTCTTAACTGTCTGAGCACCAAGCATGACTCTTGTGTGTGTCTGTTTATGATCACCAGCCTGTCACAGGCAGTAGTT-AAGATGAGGTAGCA-----TCTGTCTTTATTGTTTA---TGCCAATTTAATTAGCATTCCCTGAATTCAAAGTGTTTCCTTTTGCTTACAGAAAGGCAGTTTAGTGTGGTTTATGTTATCAAAGAATTACTAAACATTATACTTAGTGTGGTACATATTATCAAGTAAAGGATACTATTTAACATTTCTTACCAAAAA
s HiC_scaffold_1 38551305 235 - 233722169 TAGCTGCAGGGAAATCCTTCACTGCCCCAGAGCCA---------CCTGTTTG-----GATTGCGTTTATTAACCTGTTAAAGGCCATGGctgaagacacagaagcaaagctCCTATTTTTGTTCTTGACGATGCCAATTTAATTAGAATCCCCTATGGTTAAACTGCTGCCTTTTATTTAGTGAAAGGGATTTTAATGAGGTGTGTGT--------------------------------------ATAATGCCAAGTAAGGAATAC---TTAAcgcttctcaaaaaaaa

a score=9048
s chr3           64104555 789 + 160039680 TTCCTCGCTTATGAAGAGGCACTGGGGTTCACTCTTGTCATC-CTGTCCATCTTTGGGGCACTTGTCCTCTTGGCAGTAACTGTTGTG---TATGTGATCCACAGACACACTCCATTGGTGAAAGCCAATGACCGGGAGCTGAGCTTCCTCATTCAGATGTCTCTGGTCATCACTGTGCTGTCTTCCTTGCTGTTCATAGGCAAGCC--ATGCAACTGGTCCTGCATGGCCCGCCAGATCACTCTGGCACTCGGCTTTTGCCTTTGTCTGTCTTCCATTCTTGGAAAGACTATTTCACTCTTTTTTGCCTATAGGATTTCTGT---ATCTAAAAC-------CCGT--CTTATATC---------------CATGCACCCCATTTTTCGAAAATTAATTGTACTGATCTGCGTTGTAGGGGAGATTGGTATATGTGCAGCATACTTGGTGTTGGAGCCTCCAAGGATGTTCAAGAACATTGAAATTCAAAATGTAAAGATCATCTTTGAATGCAATGAAGGTTC---TATAGAGTTT--CTGTGCTCC---ATATTTGGGTTTGATGTTCTCCTGGCTCTGCTGTGTTTTCTTACAACCTTTGTGGCTCGCCAGCTGCCAGATAACTATTATGAAGGGAAATGTATCACTTTTGGGATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGAGCACCAAAGGCAAATTCAAAGTGGCTGTGGAAATATTTGCCATTTTGGCATCTAGCTATGGCTTGTTAGGCTGTCTATTTCTTCCCAAGTGCTTCATTATCTTGCTGAGGCCAAAGAGGAACACT
s HiC_scaffold_1    67545 779 - 233722169 ttttttggttacgaAGATCTTTTGGGAAAAGCTCTGGTTGGCACTGCCC----TCAGTCTAACTGTCCTCACGGCTGCTGTCCTTGGGCTCTTTGTGAAACACAGAGACACTCCCATTGTCAAGGCCAGCAACAGGACTCTCAGCTACACCCTGCTCATCTCCCTCACCTTTTGTTTCCTCTGTGCCTTGCTCTTCATTGGCTGTCCCAACACAGCCA--CATGCATCCTCCAGCAGACCACATTTGCAGTTGTCTTC--ACTGTGGCTGTTGGCCA---------AAACCATTACTTTGGTGCTGGCCTTTAAGGTGACTGTTCAAGGTAGAAGGATGAGGCAGTTGCTGGTATCAGGGGCACCAAACTACATCATCCCCATTTTCC------------CTCTGATCC------------AAATCACTCTCTGTGGAGTCTGGATGGGGACAAACCCACCCTACattgacacagacacacacattgaGCATGGCCACATCATCAACATCTGCAACAAGGGCTCCCTTACTGCCTTCTACTGTGCCCTGGGATACCTGGGCTC--------CTTGGCCCTGGTCAGCTTCACTGTGGTTTTCCTGGGCAGAAACCTGCCTGACACATTCAATGAAGCCAAGTTCCTGACATTCAGCATGCTGGTGTTCTGC--TGTGTGGGTCACATTCCTCCCTGTGTACCACAGCAGCAAGGGGAAAGTGATAGTGGCCATGGAGGTCTTCTCCATCTTGGCTTCTGGTGCAGGGCTTCTGGGCTGCATCTTTGCCCCCAAGTGCTACATTATTTTGTTAAGACCACAGGGAAATATT

a score=6867
s chr3            64116549 255 + 160039680 TTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGACCAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAAGTTGTAAGAAAACACAGCAGAGCCAGG
s HiC_scaffold_1 227512628 255 - 233722169 TTTCTCTCTGGcattaacaaaataatgtaaCGTTTAGGGGCAACGATGCAGCCCAGCAGCCTGGCACCAGAGGCCAAGATGGAGAAGACCTCCTTGGCCACCATCACCATCCCCTTGCTGCTGTGGTACATGGGGAAGAATCTGATCCACACACTGCAGAACACTAACATGCTGAACATCAAAAACTTGGCTTCATTGGAGGTGTTAGGCAGGTTACTGGCCAGGAACGCCATCATGAACCTGAGCAGGGCCAGG

a score=6775
s chr3            64259078 255 + 160039680 TTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATAGACAGCCTAACAAGCCATAGCTAGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAGAAGAGCATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGACGAGCCATAAAGGTTGTAACAAAACACAGCAGAGCCAGG
s HiC_scaffold_1 227512628 255 - 233722169 TTTCTCTCTGGcattaacaaaataatgtaaCGTTTAGGGGCAACGATGCAGCCCAGCAGCCTGGCACCAGAGGCCAAGATGGAGAAGACCTCCTTGGCCACCATCACCATCCCCTTGCTGCTGTGGTACATGGGGAAGAATCTGATCCACACACTGCAGAACACTAACATGCTGAACATCAAAAACTTGGCTTCATTGGAGGTGTTAGGCAGGTTACTGGCCAGGAACGCCATCATGAACCTGAGCAGGGCCAGG

a score=7068
s chr3           64332477 262 + 160039680 TGGCTCTGCTGTGTTTTCTTACAACCTTTTTGGCTCGCCAGCTGCCAGACCAGGTAACTATTATGAAGGGAAATGTATCACTTTTGGAATGCTGGTATTTTTCATTGTCTGGATCTCTTTTGTCCCTGCCTACTTCAGCACCAAAGGAAAATTCAAAGTAGCTGTGGAAATATTTGCGATTTTGGCATCCAGCTGTGACTTGATGGGCTGTCTATTTCTTCCCAAGTGCTTCATTATCTTGCTGAGGCCAAAGAGGAATACT
s HiC_scaffold_1    68069 255 - 233722169 TGGCCCTGGTCAGCTTCACTGTGGTTTTCCTGGGCAGAAACCTGCCTGACACATTCA-----ATGAAGCCAAGTTCCTGACATTCAGCATGCTGGTGTTCTGC--TGTGTGGGTCACATTCCTCCCTGTGTACCACAGCAGCAAGGGGAAAGTGATAGTGGCCATGGAGGTCTTCTCCATCTTGGCTTCTGGTGCAGGGCTTCTGGGCTGCATCTTTGCCCCCAAGTGCTACATTATTTTGTTAAGACCACAGGGAAATATT

a score=6902
s chr3            64332540 199 + 160039680 TGAAGGGAAATGTATCACTTTTGGAATGCTGGTATTTTTCATTGTCTGGATCTCTTTTGTCCCTGCCTACTTCAGCACCAAAGGAAAATTCAAAGTAGCTGTGGAAATATTTGCGATTTTGGCATCCAGCTGTGACTTGATGGGCTGTCTATTTCTTCCCAAGTGCTTCATTATCTTGCTGAGGCCAAAGAGGAATACT
s HiC_scaffold_1 227522767 198 - 233722169 TGAAGCCAAATTCCTGACATTCAGCATGCTGCTGTTTTTCAGTGTGTGGGTCACCTTCCTCCCTGTCTACTGCAGCAGC-AGGGCAAGGAGATGGTGACTATGGAGGTCTTCTCCATCTTGGCCTCCAGTGCAGGGCTGCTTGGCTGCATCTTTGTCTCCAAGtgctatattattttcttaagacCAGAGAGAAATTCT

a score=7230
s chr3            64448936 143 + 160039680 AGAGAAGGATA--CCAGGACTGACAGATACTACTGTGCCTAATTAGTTGGGACCTAAAACAACTAGCAGAATCAGAAAGC-TTTCAGTCTTTCTAAACA--ATGATGTCTGCCAATATATTTTTAGGAAGCTCTCAAACCAAGGAGGT
s HiC_scaffold_1 154207119 148 - 233722169 AGAGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGCGCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGT

a score=8885
s chr3            64449080 247 + 160039680 AGCCCATGACTAAAGCACCCAAGATCCAGCATCTCATTACTCCACAAGTCCTGTAACACAAATGGTGACTTATTACTCTGAAGAAG-----------------CAAGGATGACGCTGCACGGTATGGTATACTTTTAGCCAAGAGAATGA-----------------------------------------------------------------------------------------------AGGAAGCCAAAGTAAAACATCA-GAACTAATTG-TAAGAGACATAGGCTGTTGTCACTGAGAGCACCTGCTACTAAGTCTTAGTCCAGTCAGAAAC-AAATCTTTAAG--AAGAATAAA
s HiC_scaffold_1 154208422 364 - 233722169 AACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCGtactaagaaaaacaaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGGTGAGTGAGATAAGGGAGGCCATGAAACCAGAATGGCTAATTTGCTGTTTTCACTGGAATAAAAGTCTGACTTCTTCTGTACTTCTGTTTTTTAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAGAAATAAAATGCTTAAGTAACAAATAAA

a score=7017
s chr3           64478912 293 + 160039680 CTGTGCTCC---ATATTTGGGTTTGATGTTCTCCTGGCTCTGCTGTGTTTTCTTACAACTTTTGTGGCTTGACAGCTGCCAGACCAGATAACTATTATGAAGGTAAATGTATCACTTTTGGAATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGAGCACTAAAGGCAAATTCAAAGTGGCTGTGGAAATATTTGCCATTTTAGCATCCAGCTATGGCTTGTTAGGCTGTCTATTTCTTCCCAAGTGCTTAATTATCTTGCTGAGGCCAAAGAGGAACACT
s HiC_scaffold_1    68043 281 - 233722169 CTGTGCCCTGGGATACCTGGGCTC--------CTTGGCCCTGGTCAGCTTCACTGTGGTTTTCCTGGGCAGAAACCTGCCTGACACATTCA-----ATGAAGCCAAGTTCCTGACATTCAGCATGCTGGTGTTCTGC--TGTGTGGGTCACATTCCTCCCTGTGTACCACAGCAGCAAGGGGAAAGTGATAGTGGCCATGGAGGTCTTCTCCATCTTGGCTTCTGGTGCAGGGCTTCTGGGCTGCATCTTTGCCCCCAAGTGCTACATTATTTTGTTAAGACCACAGGGAAATATT

a score=6614
s chr3            64490938 255 + 160039680 TTCCTCTTTGGCCTCAGCAAGATAATGAAGCACTTGGGAAGAAATACACAGCCTAACAAGCCATAGCTGGATGCCAAAATGGCAAATATTTCCACAGCCACTTTGAATTTGCCTTTGGTGCTCAAGTAAGCAGGGACAAAAGAGATCCAGACAATGAAAAAAACCAGAATTCCAAAAGTGATACATTTCCCTTCATAATAGTTATCTGGCAGCTGGCGAGCCACAAAGGTTGTAAGAAAACACAGCAGAGCCAGG
s HiC_scaffold_1 227512628 255 - 233722169 TTTCTCTCTGGcattaacaaaataatgtaaCGTTTAGGGGCAACGATGCAGCCCAGCAGCCTGGCACCAGAGGCCAAGATGGAGAAGACCTCCTTGGCCACCATCACCATCCCCTTGCTGCTGTGGTACATGGGGAAGAATCTGATCCACACACTGCAGAACACTAACATGCTGAACATCAAAAACTTGGCTTCATTGGAGGTGTTAGGCAGGTTACTGGCCAGGAACGCCATCATGAACCTGAGCAGGGCCAGG

a score=7523
s chr3            64600432 135 + 160039680 AGCTGAATATCTCCTTGCCTGCCCCCAGGTGTTAGAAAGTCTTTGATGTGGATGTTGAACACGGGCTTTGTATGTTTTATGAGAAGCTTATAGTCACAGAAGCAGTTTCTGATGCTCTAGGTGAACAGTAGAAGG
s HiC_scaffold_1 154206193 135 - 233722169 AGCTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGG

a score=13247
s chr3            64600564 349 + 160039680 AGGGTTCTGTGGTCAGAATCAGTGGTGGAAAT--------AGGTTTTCC-ATGAAGCAAGACATTTTGACCCATGGCAGAGTGTGCCTGCTGTAGAGTAAGGGGCATTTTTGTCACAGATCAAGGAGAACTGGAGAGCAGAAGCACAAGTCTGTTTGTGGATGCATTGTAGATTGCGATCTAAATGTTCTAAACTTGGTTATTGGAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAGAGAAGGATA--CCAGGACTGACAGATACTACTGCGCCTCATTAGTTGGGAACTAAAACAACTAGCAGAATTAGAAAGC-TTTCAGTCTTTCTAAACA--ATGATGTCTGCCAATATATTGTTAGGAAGCCCTCAAATCAAGGAGGT
s HiC_scaffold_1 154206729 538 - 233722169 AGGGTTATGTGGTCCGGATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAGCAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTtggttattgtaaaaaaaggTGAGGTTTATGCTCTTCACGTTTAGTTTTTGTTGATGACTTACAGGTGTTTTTTCCTTTACGGTGTTTGCATATTAACCAGTGTATTTTACAAGTACCCTTGTAAATGATCATTTCAATGTTACAAAGGAAATTACTGAACTGAAATACTTCTGTTTACATTTGTCTCTTCTAAGGAGAGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGCGCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGT

a score=8707
s chr3            64600914 256 + 160039680 AGCCCACGACTAAAGCACCCAAGATCCAGCATCTCGTTACTCCACATGTCCTGTAACACAAATGGTGGCTTATTACTCTGAAGAAG-----------------CAAGGATGACACTGCACGGTATGTTATACTTTTGGCCAAGAGAATGA-----------------------------------------------------------------------------------------------AGGAAGCCAAAGTAAAACATCA-GAACTAATTG-TAAGAGAC--AGGCTGTTGTCACTGAGAGCACCTGCTACTAAGTCTTAGTCCAGTCAGAAAC-AAATCTTTAAGAAGAATAAAAAAATAAAATC
s HiC_scaffold_1 154208422 367 - 233722169 AACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCGtactaagaaaaacaaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGGTGAGTGAGATAAGGGAGGCCATGAAACCAGAATGGCTAATTTGCTGTTTTCACTGGAATAAAAGTCTGACTTCTTCTGTACTTCTGTTTTTTAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAGAAATAAAATGCTTAAG------TAACAAATAAACTC

a score=7017
s chr3           64623588 293 + 160039680 CTGTGCTCC---ATATTTGGGTTTGATGTTCTCCTGGCTCTGCTGTGTTTTCTTACAACTTTTGTGGCTTGACAGCTGCCAGACCAGATAACTATTATGAAGGTAAATGTATCACTTTTGGAATGCTGGTCTTTTTCATTGTCTGGATCTCTTTTGTCCCTGCTTACTTGAGCACTAAAGGCAAATTCAAAGTGGCTGTGGAAATATTTGCCATTTTAGCATCCAGCTATGGCTTGTTAGGCTGTCTATTTCTTCCCAAGTGCTTAATTATCTTGCTGAGGCCAAAGAGGAACACT
s HiC_scaffold_1    68043 281 - 233722169 CTGTGCCCTGGGATACCTGGGCTC--------CTTGGCCCTGGTCAGCTTCACTGTGGTTTTCCTGGGCAGAAACCTGCCTGACACATTCA-----ATGAAGCCAAGTTCCTGACATTCAGCATGCTGGTGTTCTGC--TGTGTGGGTCACATTCCTCCCTGTGTACCACAGCAGCAAGGGGAAAGTGATAGTGGCCATGGAGGTCTTCTCCATCTTGGCTTCTGGTGCAGGGCTTCTGGGCTGCATCTTTGCCCCCAAGTGCTACATTATTTTGTTAAGACCACAGGGAAATATT

a score=5466
s chr3           64894500 96 + 160039680 GTCAGAACAATGAGCATAGACATAGC--GTCTCTTTTCAGCCACCTACTGACACACATGTGACACACCAGCCACACCTTCAGTGCTTCTAGGGTCAGT
s HiC_scaffold_1 39210524 98 - 233722169 GTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAGT

a score=6709
s chr3           64899390 258 + 160039680 CCTGGCTCTGCTGTGTTTTCTTACAATCTTTGTGGCTCACCAGCTGCCAGATAACTATTATGACGGGAAATGTATCACTTTTGGAATGCTCGTCTTTTTCATTGTCTGGATT-CTTTTGTCCCTGCTTACCTGAGCATTAAAGGCAAATTCAAAGTGGCTGTGGAAATATTTGCCATTTTGGCATCCAGCTATGGCTTGTTAGGCTGTGTATTTCTTCCCAAGTGCTTCATTATCTTGCTGAGGCCAAAGAGGAATACT
s HiC_scaffold_1    68067 257 - 233722169 CTTGGCCCTGGTCAGCTTCACTGTGGTTTTCCTGGGCAGAAACCTGCCTGACACATTCAATGAAGCCAAGTTCCTGACATTCAGCATGCTGGTGTTCTGC--TGTGTGGGTCACATTCCTCCCTGTGTACCACAGCAGCAAGGGGAAAGTGATAGTGGCCATGGAGGTCTTCTCCATCTTGGCTTCTGGTGCAGGGCTTCTGGGCTGCATCTTTGCCCCCAAGTGCTACATTATTTTGTTAAGACCACAGGGAAATATT

a score=6484
s chr3           64942658 266 + 160039680 CTCCAAAGCTGAAATGTTGCAAAATCTGAATCTTTTTGAA-GTTGGTATGATTACTAAAATAAAA-------TGGAAACTCCCATAC-AAAAATGCAGTCATACTAAAAATATTATATAAAACTATCTTCAGGCAATTGTTGATAAAATGTGTATGAGGCATAGATAAATGTTATTTATACTTTAATCTCATCTCCAAGCTATCTCATTACCTGTATGCAAATATTCTAAAATCT-----------GAAATAAAAAGTAC-TCTGTTCCCAAATATTTTAAATAAAG
s HiC_scaffold_1 60380746 274 - 233722169 CTCAAAAAC---AACATTGAAAAATCTGAAACTTCTTGAGTACTGATATCATGTTACAAGTGGAAGAACACCTTAAAATTTTGAtgctcaaaat-------tatttaaaatattgtataaa-ttacTTTCA--TCTTTGTGTCTAAAGTGTACATAAAACATATGAATTTAGTGTTTAAACTTTGGTCCTATCTCCAAGATATCTCATCATGTATATGCAAACATTCCAAAATCTACCAAATTTcagaaatctgaaacacttctggttcTAGGCATTTCAGATAAGG

a score=5274
s chr3            64942705 230 + 160039680 TGATTACTAAAATAAAATGGAAACTCCCATACA-AAAATGCAGTCATACTA--AAAATA---TTATATAAAACTATCTTCAGGCAATTGTTGATAAAATGTGTATGAGGCATAGATAAATGT--TATTTATACTTTAATCTCATCTCCAAGCTATCTCATTACCTGTATGCAAATATTCTAAAATCTGAAATAAA-----------AAGTACTCTGTTCCCAAATATTTTAAATAAAGAACCCTCAGTT
s HiC_scaffold_1 112284025 245 - 233722169 TGGGCACCAACATGACACTATAGGTCCAATGCATAAAACTctgtttcattattaaaataaaattat-taaaaatat--tcagcctaT-GTGTATGAACTGTGTATAAAGCACAAGTGAATTTCATATTTAGACACGAGTCTCACCTCAAAGGTATCTTATTATACATATGCAAATATTCTGAAACCTGAAAATAATGCAATATCTGAAATACTTTTGGTTCTAAGCTTTTAAGATACGGATACTCAATT

a score=4129
s chr3            65090612 110 + 160039680 TACTGGAACATTATCATAGCTATGATGTCACTAGGTAATATGAACTTTTCATCTCTATTGTAATATTGGGGAACCACAATTACACATGCAGTCTACC----ACTGAAATATCAT
s HiC_scaffold_1 182351770 114 - 233722169 TGCTATGACATTAAGATAGCTATGATATCACTAAGTGATAGGAATTGTTTGGCTCTGTTATAATCCTATGGGGGCACCATCATATATGTGACCCAACATTAACCGAAAAGTCAT

a score=4464
s chr3           65140411 133 + 160039680 TAAAATGCTTTATTTAGTGCACAGTTTTGGAGGCCATCATTCCAAGATCCAGCAGCTCCATCTGTCCTGTCTTTGGTGAGATCCCTTTGGCTGAGCC------------AGCACTAGACAGGGAAATGGCTGAGTGAAGATAAGA
s HiC_scaffold_1 58764067 145 - 233722169 taaggaggtttacttagctcatgaTTTTGGAGACTGAAATCTCAAGATCAAGCAGCCCCATCTGTTCAGTCTCTGATGAAGACTCCTTGTCAGGATCACAGTATAgtggagaagcagaaagagaactGGCCATGTGCAAAAGGGA

a score=3807
s chr3            65140412 92 + 160039680 AAAATGCTTTATTTAGTGCACAGTTTTGGAGGCCATCATTCCAAGATCCAGCAGCTCCATCTGTCCTGTCTTTGGTGAGATCCCTTTGGCTG
s HiC_scaffold_1 132500326 90 - 233722169 AAAGAGCTTTATTTACCTCACAGTCATGGACATTGAAATTCCAAGGTTGGGTGGCCCCACCTGCCCAGTCTCTGGTGAGA--CTGTTGGCTG

a score=3691
s chr3            65274255 79 + 160039680 CAATCATCTCTGGAGACACCTGCTCCTCTACACTCAGAGTTGTTCTTTACTAATGCCCCAGGCATCTCTCAATCCAGTC
s HiC_scaffold_1 160063265 79 - 233722169 CAATCTTCTCTGGAAACGCCTTCCCAGACACGCCCAGAAGTATGCTTTACTGATTTTCTAGGTGTTCCTCAATCCAATC

a score=5355
s chr3            65347316 139 + 160039680 ATCCCTAATTCAAACATTTAAAATCAGAAATGTTTCAAAATCCAAA--TGTTCAGCACTGACATAACACCATAAAAGGAAAATCCCACACCTGACCTCCTGGACTGGGTCACAGTAAAAATATAGGTACACTTCAAATGCT
s HiC_scaffold_1 201589900 141 - 233722169 ATCACTAATCTAAAAATCTAAATGCTAAAGTGATCCTAAATCTGAAGTTTTTGAGCACTGAAATGATGCCACAAGTAGCAAATTTCACACCTGACCTCAGGTGACAAGTGACAGTCAAAATGTAGGCACACTGAAAATATT

a score=6090
s chr3            65347316 130 + 160039680 ATCCCTAATTCAAACATTTAAAATCAGAAATGTTTCAAAATCC-AAATGTTCAG--CACTGACATAACACCATAAAAGGAAAATCCCACACCTGACCTCCTGGACTGGGTCACAGTAAAAATATAGGTACACT
s HiC_scaffold_1 168551692 133 - 233722169 ATGCCTAATCCAAAAACCTGTAATCTGAagtgctccaaaatctgaaatgttttgaCCACGGACATAATGCCACAAATGGAAGATTCTGCATCTGATTTCCTGTGACAGGTCACAGTTAAAATGCAGGTGCACT

a score=6494
s chr3            65347319 131 + 160039680 CCTAATTCAAACATTTAAAATCAGAAATGTTTCAAAATCCAAA---TGTTCAGCACTGACATAACACCATAAAAGGAAAATCCCACACCTGACCTCCTGGACTGGGTCACAGTAAAAATATAGGTACACTTCAA
s HiC_scaffold_1 199345743 134 - 233722169 CTTGACCCAagaatctgaaatccaaaatactCCAAAATTCGAAACCTCTTGAGCATTGACATGACCTTACAAGTGGAAAATCCCACACCTGATCTCCTGTGATGGGTCACAGTCAAAATGCAGGCACAGTACAA

a score=4498
s chr3           65347337 118 + 160039680 AATCAGAAATGTTTCAAAATCCAAA---TGTTCAGCACTGACATAACACCATAAAAGGAAAATCCCACACCTGACCTCCTGGACTGGGTCACAGTAAAAATATAGGTACACTTCAAATGCT
s HiC_scaffold_1 21290316 119 - 233722169 aatctgaaattttt--aaatctaaaattttttgAGCATTGACATGACGGTACAAGTGGAAAACTTCACACCTGACTTCAAGTGACAGCTCACACTCAAAACACAGGTGCACTAAAAGTGCT

a score=4085
s chr3            65347671 73 + 160039680 AAATTACCTTTAT-CTATGTATATGAGGCATATATGAGCCATAAATAAATTATGCATTTAGACTTGGGTCCCAT
s HiC_scaffold_1 216639989 74 - 233722169 AAATTACCTTTGGACTGTGTATATAAGGTATATATGAAACATAAGTTGATTTTGCGTTTAGACTTTGGTCTTAT

a score=8366
s chr3            65506235 157 + 160039680 tTAGCAGACTTAATTC-TTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCC
s HiC_scaffold_1 140732021 153 - 233722169 TTGacagatttcattcattttgtgttCCTTACATAAAATGCTTTATGTTGTAGCTACTGCTAGAGCTTGAGTCTTCGGGA--GAGATTCTGGTGTGGGTTTTCACAAATTGATCAGTAAATTCCTGGTAAGGA-ACTTGGTGA--ACAGTTTCTCTCC

a score=11610
s chr3           65506239 163 + 160039680 CAGACTTAATTC-TTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGG
s HiC_scaffold_1 71897969 164 - 233722169 cagatttaattcattttatttttcttgtataaaaACCTTTATGTTGTAGCTACTGCTGGAGCTTGAGTCCTCCAGACAGAGACTCTGGTGTAAGTTTCCTCAAGATGCTCAGGGAATTCCTGGCAGGAAGACTTGGTGAACACAGTCTCTTTCCAGGGGTCAGG

a score=16336
s chr3           65506243 390 + 160039680 CTTAATTCTTTTATTTTTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGT----GAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATGGCATCAAAGGTGGCCTTAGCAAAG-TTGCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACCGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGTGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTAC
s HiC_scaffold_1 31945802 355 - 233722169 cttattcactttatttttctcatgtagaAGCCCT-GTGTTGTAGCTACAGCTAGAGCCTGAGGCCTCTGGACAGAGACTCCGGTGTGGACTTTTACAAGATGGTCTGTCTGCAAATTCCTACTG-GGAGACTTGGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTTTGGCAGCTGGATGTCTTGGAGATGATATCAATGGTGGCCTTCGTGAAGCTTCCCAGAGGAGCTGTGCAGCCCCTGGCAGAGGTATGGCAGGCTTCAGTG-CAGCCATCAG-AGAGGCAGCCTGGGCA---------------------------TGGGGCTTAGATGCTG---------ACAGAGACATAGCAGCCCCTCATCTTGCAAGGCACAGTACGGGGCTTGC

a score=13419
s chr3           65506259 378 + 160039680 TTCTTGTATAAAAACCCTTATGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATGGCATCAAAGGTGGCCTTAGCAAAGTTGCCA-GGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCAT--CTATACCGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATGCCAGTGCCTCTGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGTGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTACCAAT
s HiC_scaffold_1  8999549 315 - 233722169 TTCTTGTATAAAAACCCT-GTGTTGCAGCTACTGCTGGAGC---------------AGGGACTCTAGCATGGGTCTTTATAAGATG-TGAGTGAATTTCTG-TAGGGATACTTGGTAAACAAGGTCTCTTTCCAGAGGCTGGGAGTCAGGTAGCTGTAGAGCTGGGAAATGACACGATTGGTATCCCTGGCAAAGTTGCCCTGAGCAGCAGCGCACACCCTGACAGGAATACAGCAGTCATAGCTGT----GCCACCATCAGAAGCCTC-TGGGAGTAGGA-------------------------------------------CAGCACAGAGCCCCTGCAGCTGGTCACCTTGCAAGGGACGGTGCGGGGCTTGCCCAT

a score=21624
s chr3           65615387 790 + 160039680 AGGACAGCTTGCATCTCTTG-TAATCTGTTCTTGGCATTTTTTTCTTTAGCTTCCTTCATTCTCTTGGATTGAAGTTTAGCACATTCTTTAGTGTCCTCCTTGATTTCCTAGGTATTTTGCTTCTTCAGAGCAGCCTGTCAGCATTTGTGT-ACAGGATGTGTGGGGTGAGAAGCTGCTGGATCTCCTGTGCTTTGGCCACGGGCTTCTTATCTTCTTTGTTGGAGGGCTTTCTGAAAACCTACTGGCAGATACCATCTTCTTTTAGAGAGATTGAAATGCTTTCTGATCCTGTTATCTCCTCTGGGCCCTAAGCCCCAAGACACAGGAGTATCTTTCAGTCTAGGAATACCCTCTTCTCGTTTGTTTTCTGTTTGGTTGTTTGCTGTTGTTGTTGCTTTTACGATAGCTAACTTGAGAACCCTCAGACTGGCATCTACAATGCATCTGTGAACAGATTTGTGCTTCCTCTCTCCTGGTCCCCTTGGTCTATAACAAGAATGCCCCTTACTCAACTAAGCAGGCCCACCGTGCCATGGTTCAAGAC----ATCTTGCTTCATGGGAAACCTTGTTTGTCCTTCCCACCACTGATCCAGACCAC--ACAATCCTTCCATTCTTCACCCACAGCACCTGC--CTACTTCTGGGGCCATGCGCTTCTCATAGTAAGTACGAAACTTGTGTCCATC-TTCCATCCCAATGAGTTTCTGACAGCCAGTGGCTATCTAGGAAGGAGCTGGTCAGCTTCATCTTGACACTGCCGACCTCCTAGGAGATGACACAA---AAAGGAGCATCTT
s HiC_scaffold_1 50575647 731 - 233722169 AGGACAGTGTGCATGTCTTGGCAATTTGTTCCCAGC--------CTTTagctttctttat-ctcttggCCAAAAGTTTACCATATTATGTAaccttctctttattttccttagtcAACTGTTTCTTCAGAGCAATGTAGTGGAGTTTGTGTTGTAGAATACATGGAGTAACAGG--------------ATGCTTAAGTCTTGGGTTGCTTGCCTTTCTTGTATAATGGCTTTTTGATGACATATTTGTTGACATC-------TTTAGAGGCATTCTAAAGTTTGTAGCTTTTGCTAGCTCTTTTGAGCCCCAAACATCAGGGCAGAGTGGTATT----AGTCCAGGAATGTCc-----------gttttctcttt------------------ttgtgtgtgtgataacAATGCTTACATTGCCCAGATTGGCACCCATGGTGCAACCCACAACAGATGTGTGCTG--TCTCTGCAGCTCTCCTTAGTTTGTAACAGGAATAATCCTTACTCAGAGTAGCAGGCACACATGGCCGTGGTTCAGAACTGAATCCCCGCTTCGTGAGTAAAC---CTTGTCATTCCTCCTGCTGATTTGGATCACATATAACTCTTCCATTCTTCACCCAGAACACCAGCAGCGACTTCTGTGGCCATATGCATTTCATAGGAAGTATGAAATTTGCATTCATTGTTATACGTCAGTGAGTTTCTGGTAGCTGGTGG----CTGGGAAGGAGAT-TTTAGCTTCCTATTGAGGCAGCTGATTGCCTATGAAGTGCTATGAAATAAAAGagtaactt

a score=7012
s chr3           65788732 139 + 160039680 GAGCCATGTGCTCTCTTTGGTTCTGGAGACCTCACTTGTAGCCAGCACAAGTGGCCTCGCACCACAGCCTGCCAGACAGACTTGC-TTTGAGAAGTCCTGTTCCCAGCAGGCCTCCACAGGTGCCAAGATGGTGGAAAGA
s HiC_scaffold_1 13776686 140 - 233722169 gagctgtttgttttctttagtttagGAAACCCTGCTTATAGGCACCAAAAACGGCCTTGTAGCACAGTGTTCCAGACATATTTACCTTTTAGAAGTCCTGTCCCCAGCAACCTTCCCCAGGCTCCAAGATGGTAGGAAGa

a score=4237
s chr3           65959617 264 + 160039680 gaggtttaattttggtttatggtctctgaggtttcaggctacagccatgtggccctatacctgtaggactgtgtaggcagaactttatggtgtg--agaccttggtaaaAACAAATCCCTTGCCACCAAC-AAAGAGAAAGGGG------AATATATCCAG--------------------GGATCTCCCTCCTCAAGTAGGTTGCCAACTCCTAATTGCTTGTCCAGCTGTGACCTCATCGTCGGATTAACCCATTTATGAGGTATTTGCCTTTGTGATTAAATCACCTCTC
s HiC_scaffold_1 29328996 289 - 233722169 gaggtttG-TCTTGGCTTACAGTGTCAGAGAGTTTAGGGCAtgatcatctggctccaagac---agaaatgccACAGAAGACAGGTGCGGTAGAGAAAAGCTGgccagaagcagagagcaggagaaaaaccagagaggaaggggccagggaacAGATACAGCCCCCAAGGTCACACCCTTGTGACCCACTTCCTTCAGCGAGGTCCCACCTCTTAATAGCCTGTTCAGCTATGAACTCTTCAAGTTGTTAACCCATTGATTTGGTTTGTGCCCCCACAATCCAATCATCTCTC

a score=4564
s chr3            65959626 254 + 160039680 ttttggtttatggtctctgaggtttcaggctacagccatgtggccctatacctgtaggactgtgtaggcagaact--ttatggtgtgagaccttgg----taaaAACAA----ATCCCTTGCCACCAACAAAGAGA--------AAGGGGAATATATCCAGGGATCTCCCTCCTCAAGTAGGTTGCCAACTCCTAATTGCTTGTCCAGCTGTGACCTCATCGTCGGATTAACCCATTTATGAGGTATTTGCCTTTGTGATTAAATCACCTCT
s HiC_scaffold_1 164994354 261 - 233722169 ttttggctcatggtttcacagCTTTCAGCTTATAGTTAGCTGGTTCCAGAGCAGATGGCA-----AAGTAAATTTGCTCATCATATGGAAACCAGGAAGATGAGAGCAAGAGGAGCACTGG------ACAAAGATATGTCCTTCAAAAAGCATATCCCCGGTGACATACCTCCTCCCACTAGACCCCACCTCCCAATCGCTCATTCAACCGTGAACTCATCATTGCGTTAACCCATTGATGAAGCTGACCCCCTCACAGTCCAATCACCTCT

a score=4383
s chr3            65968900 65 + 160039680 ATTAGTGTTGCTTTCTTCTAAATGAACAGCCTTCTGTGAGCCTGGCTTTTCCTCCTGTGGGCTGG
s HiC_scaffold_1 179350475 65 - 233722169 ATTTGTGCTGCATCCTCCTGAAGGAACATCCTTCTGTGAGCCTTGTTTTTCCTCCTGTAGGCTGG

a score=12552
s chr3            65987076 435 + 160039680 ATGGCTAGTTAAGCTAAACATTTCTGAGG-TGGTCT---ATCACTGATTAACACTGTGGTCAA---TATTGGGGGCAGTGTTAATGTAGCCTCCTGAGCATTCTGGGAAATATTGATGACC---------CCAGCAGCCCTCCCATCCA-TGCTTTGATGGCAGGCACGATAGTAGTCTGTCTTATA-----AACTATAAAATGACCCAAGGGAGGACAGT--------TGCTCAACATACATGGGCTTGCTTGGGAA---------GCTGCCAGAGGTACCAGCTTTTAGGAATGCAGAGCTATCTTCTAGTATCTCACCAGAATGATACTGAACTCTTCCTTTAGCTCAAACAAACTTG-CAAGCAGTGTGAGTTGTAAGTTTACCTAGTGTGTGGGCATTGCTAGTCTTGAC------------ATCAAGATAATCACCTGAGCAGTGAAACCAGCTGCCTCCATTGGTGAGTCACGAATACTG
s HiC_scaffold_1 211033150 477 - 233722169 ATGGCCAATTGAGAGAAACAGGTATGAGACTGGTCTCCTGCTGCTGATTAAGAATGGTGTGAAAGGTGTTAGAGATAATATTCATTTAGCCTTCTGAGTTTCCTCGGCAGAAGTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTTTGA---CACCCACAGCAACTCTCTGTCTCATATTGTGAACAGTGAAATGATTCAGACATGGATAATCAGAGAACTTCTCAACACACATGGGCTTGCCTGGAACCATGTCAACACTGGCAACATAACCAGGTTTCAAGAATTTGGGGCCATCTTCCCATTTCTTACCAGATCAAT------CTTTTATTTCAACTcag-caaacttggaaaaaaatgtgaattGTGTGACAATCAAGTACAGGGGCATAACCAGCAATAACTGGCCTGGTTGGATCAGGATAATCAACTGAGTAGTGAAACCAGCTGCTTCCATTGGTGGGTCATTATTGTTG

a score=21810
s chr3            65988729 776 + 160039680 CTGCTGCTAGCAATGCTAGTAACATTGCATGGTGAACATCTTTTAGAGACACTTTCTTGACACTGAAGCATAT-TTGTTCTC---AAGACCTTCACCCAAAGCTTTACAGTGCATTTCAACAGACTTCACTT----GTGACATTAATTGGAACAAAGGTAACCACCGTGCT--GTTTGGAAATACTGATCACCACGTGGTCTACTGGGACTATATGGATACCAGTAATTTT-TAAATAACTGTATTTGTAAATACAGATTCAAAGGCTTTAACAGCTAGGCAAGTTGTTGGTAGAATGTAATCCAAGGCTTTTTGCAGTGGGCATCCACTGGCACTGCCATCTTTATGGGTGAATTTCCAGCTCTGGAGAC--AAGGCATATTGACATTTAGCTTCATCACGTTGTCACTGTTCCAACTAGAAACTGGCACAAAAACTATCGTGTCAAAGTCTTATCGAGCTTCCTTGT-CAGGCTCTGACTTCATGAACGATTTCCTCA--TGTCCTGTGGATGAAAGGTGACTCTGAGGAATTCATGTTGTTTACGTTGGTACTTAATTGTTTCATACCCAGTGCATAAGCCAAAATGGTGTTGACACAGGTCTACACATTCTTAGAGATTCCAGTTTCAAATCTACCTATGCCAGCAG-----GCAGGAAAACACAGTCAGCATGAGAT-CACCTGTTATAAAATGGTTGGGATGAGGTTTCTGTGTGCTGGGGCTTCAGTGCTAGCCAC---ACATCTGCTGATCTCAGATTTCTATAGCTGTCCATCAGATGTCTAGTAATGGTGA
s HiC_scaffold_1 209142725 749 - 233722169 CTGTTGCAAGCAATGTTGC--------CACAATGAACATCTTTGACAGAAACATTCTTGATGTTAAAGCCCACATTGTCCCCGGGAAGAGCTTCACTCAAGTCTTCATGGTGCATTTCAACAGACTTTCCTTCAGTGTGACACTGACTG-----AAGGTCACCACTATGCCAGGTTTGAGAATTTCAGTCTCCACTAAGTCCACAGGAACAGTGCCAGTACTACCTATTTTGTAGACATCC-----TGGAGGGACAGCAGCAAAGGCCCTGTCAGTTGGGCAAGTCGGTGGAAGGATGTTATCCAAACATTAAAGTGACGTGGCTCCACTGACCTGGCCATCTGTAC-------CTTCCTTCCCCTGAACCCAAAGGTATATTAGCACTTGGCTCCAGCATGTTGTCACCATTTGAACCAGAAATTTGCACAAAAGCTACCATGCCAGGGTTGTAGCTGATTTTATAATGTAGATGCTGACCTCCTTAATGATTTTGTTACCTCTCTTTTGGTTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCAACAATGAGTTGTTTCACATCCACCGTGTAAGCCGGAA------------GGGTCTTCCCATTCTTGGAGATACCAAGTTTGAATTCAAA-ACACCAGCAGCAACATCAAGACAGCACAGTCAGCCTGAGATGTGCCTATAAT--CATGCTTTTGATGAAGTGTATGTGTCCATAGGCTTCAATGATAGTCACATAATACCTGCTGGTCTCAAATTTCCACAG--------GAGATGTC----AATGGTGA

a score=19902
s chr3            65988763 728 + 160039680 AACATCTTTTAGAGACACTTTCTTGACACTGAAGCATAT-TTGTTCTCA---AGACCTTCACCCAAAGCTTTACAGTGCATTTCAACAGACTT-----CACTTGTGACATTAATTGGAACAAAGGTAACCACCGTGCTGTTTGGAAATACTGATCACCACGTGGTCTACTGGGACTATATGGATACCAGTAATTTT-TAAATAACTGTATTTGTAAATACAGATTCAAAGGCTTTAACAGCTAGGCAAGTTGTTGGTAGAATGTAATCCAAGGCTTTTTGCAGTGGGCATCCACTGGCACTGCCATCTTTATGGGTGAATTTCCAGCTCTGGAGACAAGGCATATTGACATTTAGCTTCATCACGTTGTCACTGTTCCAACTAGAAACTGGCACAAAAACTATCGTGTCAAAGTCTTATCGAGCTTCCTTG--TCAGGCTCTGACTTCATGAACGATTTCCTCATGTCCTGTGGATGAAAGGTGACTCTGAGGAATTCATGTTGTTTACGTTGGTACTTAATTGTTTCATACCCAGTGCATAAGCCAAAATGGTGTTGACACAGGTCTACACATTCTTAGAGATTCCAGTTTCAAATCTACCTATGCC------AGCAGGCAGGAAAACACAGTCAGCATGAGATCACCTGTTATAAAATGGTTGGGATGAGGTTTCTGTGTGCTGGGGCTTCAGTGCTAGCCACACATCTGCTGATCTCAGATTTCTATAGCTGTCCATCAGATG
s HiC_scaffold_1 211033655 711 - 233722169 AACATCTTTGACAGAAACGTTCTTGATGTTGAAATCCACACTGTCCCCAGGAAGAGCTTCACTCAGAGCTTCATGATCCATTTCAACAGACTTTCCATCAGCTGTGACACTGACTAGAGTGCAAGTGGCCACCAGA---TTTGAGAACACCAGTCTCTACTAGGCCCAA-GGAATGGTACCAATTTCACCAATTTTGCAGACATCT-----TGGAAGGGCAGTTGCAAAG-CCGTGTCAGTTGTGTGAGTGGGAGGAAGGATGCAATCCAAAGCTTTGAGCAGTGTCATTACTCTGGTATTGCTGTCTGTACAAATGACTTTTTTTCCCTTGAACTAAGACATATTAGCACTTGCCTCCAGCATGTTGTCAGCATTCCAACCAGAAACTGGTACAAAAAACACCATTCCGGAATTGTAGATGATTTTCTTAATGTAGGTGCTGACTTTCTTATCAATCTTCT-----------GGCCATAGGTGCCTCAGTAGAAACCACTTTGTAAACACCAACAATTAATTGTTCCACACTCAGCGTATAAGCAAGAAGGTCGTGCTCATGAGTCTGTCCATTCTTGGAGATACCAGCTTCAATTTTACCAATACCAGTGGTAGCAATCAGGAAAGCAAAGTCAACCTGGGatgtcattttttaaa--------------gtctCTATATCCAGGGGAATCAATGATAGTCACACAATTTATTGTCTCAGATTTCCACAGGAATGTATCAAGTG

a score=13676
s chr3            65988938 426 + 160039680 ACCAGTAATTTTTAAATAACTGTATTTGTAAATACAGATTCAAAGGCTTTAACAGCTAGGCAAGTTGTTGGTAGAATGTAATCCAAGGCTTTTTGCAGTGGGCATCCACTGGCACTGCCATCTTTATGGGTGAATTTCCAGCTCTGGAGACAAGGCATATTGACATTTAGCTTCATCACGTTGTCACTGTTCCAACTAGAAACTGGCACAAAAACTATCGTGTCAAAGTCTTATCGAGCTTCCTTGTC--AGGCTCTGACTTCATGAACGATTTCCTCATGTCCTG--TGGATGAAAGGTGACTCTGAGGAATTCATGTTGTTTACGTTGGTACTTAATTGTTTCATACCCAGTGCATAAGCCAAAATGGTGTTGACACAGGTCTACACATTCTTAGAGATTCCAGTTTCAAATCTACCTATGCCAGCAG
s HiC_scaffold_1 123930681 408 - 233722169 accaacAGTTTTTAATCAATAACA-----AGGGGCATGTGCTAGGGCTT-GTCAGTTGGGCAAATGTGTAGTAAGATGAAATTCAAAGCTTCAAGCAGTGTGGTTCCACTGGCATTGCCATCCTTATGAGTGTATTTCCATCCTTTAAACCAAGATATGCTAGCACTTTGTTCCAGTATGTTGTCATCATTCCAACTGGAAGTTGGCACAAAAGCCACTGTGTCCAGGCTGTAACCAATTTTCTTATCAGAGGTGCTGACTTTCTTAATAATTTCTTCAGATCTTTTCTGGCTGTGGGGTGGCTCAGGAGAATTTATTTTGTTAACCCCAAGAATTAGTTATTTCACATCCAGTGTGTAAGCCAGAAGGG----------------CCTGTTCTTGCAGGTACTATCTTTGAATTCATCGTTATTAGCAG

a score=10201
s chr3            66099788 278 + 160039680 CCCTACAACCATGAGGG---ACACTCTTAAAACTCACCGGGCTTTCTGTAAGAAATGTTGCAAGCAC--ACCCCACAAATCGCACCA-TACATGAAGTGTAAGGATTCTCTGTACATCCAAGGCAAG---TCTTAGAGTC--------------------------ACTGAGTCTATTCTCAGTGAAAAGGCTGAAATCACAAAGAAGCATGCG------------TGTGTGGAGCCGAACTGCAGATTCAAGAGGATGCTGGCTCTCCAGGGACAGGAGCATTTCAAACTGGAAGGTGGTAAGAAGAGAAAGGGCCATGTGTTC
s HiC_scaffold_1 203219974 325 - 233722169 CTTTACTGCCAAGATGGTCAACGTACCTAAAACCCGAAGGACTTTCTGTAAGAAGTGCGGCAAGCATCAGCCTCACAAAGTGACCCAGTACAAGAAGGGCAAGGATTCCCTGTATGCCCAAGGAAAGAGGCGCTACGATCGGAAGCAAAGTGGCTACGGAGGGCAAACGAAACCTATTTTCCGGAAGAAGGCTAAAACGACCAAGAAGATTGTGCTCAGGCTGGAGTGTGTGGAACCTAACTGCAGATCGAAGAGGATGCTGGCCATTAAGAGATGCAAGCATTTTGAACTAGGAGGAGACAAGAAGAGGAAGGGCCAAGTGATC

a score=4864
s chr3            66290986 537 + 160039680 GAAGCTGCCTTGGAGTA--AGGTTTCACCATGACCTTGTGTCCTCTTATCTATGATTCCTATTTTCCTCCCCTTCCTGTAAAAGACAAGCTACAGAAACTAGAATCTCTCTTCTCTAAGGTAGATCACAGACACTAGAGCCCCTGTCCCATAGCAA-----ATCACA-----AATCCAGGGACC--------ACCGTTCGTTCTGTTTTTCTCTTGCTGTTCTG---------------TGTTAGAGCTAG-----------CTAGGAAATCCTTTCACACAGCTGTCCTGATAGTAAGACTCTGGAGGAGGCTGGAACGCTA-CACAGAGAGTCGAAGAAAGATCTGAGGCGAGAGGCCTTGAAGGATTGCCCCATTCAGTGTATTATCATTACAGCAGACCTTTTCTGTC------CACTTTATTGACACTGGTTATGCATCGATAAATTTAAGCTTAAAAAAAAAATGAACCGATTACTCTGAGTTTCTGGGTCCCCAGTCTGAAAGCTCTTATATCACACAGAACTGTGATTCAATA-------------CCTCCCTTCCTTGCCAGTC--CTTTGATA-AAGGGTGTCAGATGTGATCTTT
s HiC_scaffold_1 233265419 568 - 233722169 GAAGCAGCCTCAAAACACAAAACCCCTTTTTGATCTCCTGCCCTGTCCT----GCTGCCTGCTGTCCTCACTTTCTCGCCCCAGGCAAGCCCTAGAAACTAGAATTCCTCTTTTTTATGGCAGATCGGAGAAACTAGAATGCTTTTCTCCCTGAGACACCCATCACAGCTGTATTTCCTGGGCTGGGCATGAAACGTTAACCTAACTTATACCTTCCCCAACTGAGTAGCCGCTGAGCATGCAGGAATTAGGATGCTCATTCCTGAAGGGTCCTTTCCCACA-----CCAGAGAGGAAGA----------------AATGCTACCACAGAGCGCACGAGGAAG--TTGAGCAGCCTGGCCTTGATGGGTTTCCCGGCTCCATCTGTTACCGTTAGTTCATATCCTTCTTGTCCCATCACACCTCTCCGTGGCTGTCCCTACTTCATCCAACCTCAGCATAAATTTAGACAGTGTC--TTCCGCTGTATCTTTGGGTCTTCActctgaa---------gcaaaataaaattttgatgcaATAAATATGTTACGCTTTTCTTTTACTAGCCTGTCTGTTTTGTCATATGAGGGTCAGCTGAGTCCTTT

a score=19196
s chr3           66562809 760 + 160039680 AGGACAGGCTATGCTTCTTGGCAACCTGCTTCTGGTGCTTTTCTTTGGCTTCCTTCATTTTCTTGGCCAAAAGTTGAACATATTCTTTAGTTTTCTCCTTGTTTTGCTTAGTGGGTTGTTTCTTCAAAGTCA-------GCATTTGAGTTACAGGAGAGATGACATAACAGAATGGTAGATCTTGGGTTCTTCGGTCATGGGCTTCTTATCTTCTTTGTTTAAGGGATTCT-GACAACATATTGGCGGATAGTAACTTCTTTTAGAGAGACTGAAAAGCTTTCAGATCCTGTTAGCTCTTGTGGGCCTCAACTGCTGAGATACAATAATATCTGTTAAG---TATCC---TTCTCTCCT-GTGTTTGAAATAATTATGTTGAGAACACCCCATTTGGCTTCCACAATGCATCCTTAAATAGATTTGTGctctctctctctctctctctctctctctctctctctctctctctctctctctccctctcCAGTTCCCCTTGGTCTATAACAAGAATG-CCCTCAGTCAA--TGGCCAGTACACTCTGATGTGGATCAAGACACCCACCTTGCTTTGTGGGGAAAACCTTATTTGCCTTTCTCCCCACTGGCAAGAA-CACACA---CCCTTGCCCTTTTCATCTAAAGCGTCAGCAAATACTTTTGTGGTCAAGTGCTTCTGATAGAAACTACAAAACTTGCATGCATTGTTCT-CTTCAATGAGTTTCTGACACCTGGTGGCTGGGAAGGAGATGTTCAGCTTCATCTGGACACAGACAACTAC
s HiC_scaffold_1 50575647 699 - 233722169 AGGACAGTGTGCATGTCTTGGCAATTTGTTCCCAGC------CTTTagctttctttatct-cttggCCAAAAGTTTACCATATTATGTAaccttctctttattttccttagtcAACTGTTTCTTCAGAGCAATGTAGTGGAGTTTGTGTTGTAGAATACATGGAGTAACAGGATG--------------CTTAAGTCTTGGGTTGCTTGCCTTTCTTGTATAATGGCTTTTTGATGACATATTTGTTGACA-------TCTTTAGAGGCATTCTAAAGTTTGTAGCTTTTGCTAGCTCTTTTGAGCCCCAAACATCAGGGCAGAGTGGTATTAGTCCAGGAATGTCcgttttctctttttgtgtgtgtgataacAATGCTTACATTGCCCAGATTGGCACCCATGGTGCAACCCACAACAGATGTGTGCTGTCTCTG--------------------------------------------------CAGCTCTCCTTAGTTTGTAACAGGAATAATCCTTACTCAGAGTAGCAGGCACACATGGCCGTGGTTCAGAACTGAATCCCCGCTTCGTGAGTAAACC-----TTGTCATTCCTCCTGCTGATTTGGATCACATATAACTCTTCCATTCTTCACCCAGAACACCAGCAGCGACTTCTGTGGCCATATGCATTTCATAGGAAGTATGAAATTTGCATTCATTGTTATACGTCAGTGAGTTTCTGGTAGCTGGTGGCTGGGAAGGAGAT-TTTAGCTTCCTATTGAGGCAGCTGATTGC

a score=5192
s chr3           66654568 169 + 160039680 TGTCAGTTTTTCATTACTATGACAAAGCACACGAGACGGACTAGCTTTATAAAAAAAGAAAAAAGAGAAGAGAAGAAAAGGTCTGCTTAGCTCACATTTCTAAGTATCCAAGGACAAGATGCTGGCATCAGCTCAGCTTTGGTTAAGGCCAAACAGTGATAGCATCCCA
s HiC_scaffold_1 61551482 149 - 233722169 TGTCCATTTTGTGTGGCTATGGCAAAACACCTGAGATTGaaataatttgtaaagaaa-------------------aaaggttta-ttagCTCACAGTTGTGAAGATTCAAGAGAATGATGTCAGTATCTGCTCAGATCTGGTGAAGCCCTCATAGTGATAGCATCACA

a score=4576
s chr3            66985685 126 + 160039680 GGAACCAGGAAGGCGCTGAGCTTAAATTGAAGCAAGTTCTGAGGACGCCGGTGGCGCCGTGGTTAGAAGAGGGGGTTCCAGGTCCCCACGTCGGGAGGTGCGAACCCGAAGGT----CGAGCCAGGTGAT
s HiC_scaffold_1 203277704 124 - 233722169 gGAATCAGGAAAGCATTGAGTTTAAACTGGAGCAAGTTCAGAGGACGATGGTGGCATCCTCATTTGAAGAAAATCCTCTGGGTCTGTA------GACTTGCAGACCTAAGAGTGATATGAGCCAGAAGAT

a score=7111
s chr3            67013315 356 + 160039680 ACTTTTAATTAGAGGCATAAGTCACTTAACAATAGGATACATTTTTGGCAAATGTATCACTAGGCAAATTTGTT---GTCTGAACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTCTGTAGATCATGCCACTCTTTCAGATAGTAAACCTTCTCTTTAAAAATAACTAGAAGTACATTAGAAATAACAAT-GCATATAGCATAATAGGCATATAAGCTTGTAACATG-------GTTGTCATT-TTTAGTGTTATACACTTTACATAGTTTTGAATGTCATATTTTTCTA
s HiC_scaffold_1 100642743 337 - 233722169 ACTTCCAAATACAGTCTTAAGTCACTGAATGATAGAG------------AAATGTATAAATAGGTGATCTTATCATGGTTCACACATCATAGAGTATTCTTAGCCAAACCTGGATGGCACAGGTCAACCATTCAACATGACCTTTTGATTCAGTCAAGAGATGCTGTGAACA--AGACGTATGAAGTTGATGATGATATAAGACAGCAAGGTGCTTTGCAGTAAGCATATTCTTTTGAAATA----------------GAATAATTATAGTGTATAGTATGAAAAATGCATAAACCAGTAACATGGTGGTTTGTTATCATTATCAAGGATTATGCATTATTCATAATTCT-ATTACTATACTTTTATA

a score=5503
s chr3            67013320 286 + 160039680 TAATTAGAGGCATAAGTCACTTAACAATAGGATACATTTTTGGCAAATGTATCACTAGGCAAATTTGTTGTCTG----AACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTCTGTAGATCATGCCACTCTTTCAGATAGTAAACCTTCTCTTTAAAAATAACTAGAAGTACATTAGAAATAACAATG---CATATAGCATAATAGGCATATAAGC
s HiC_scaffold_1 124719299 286 - 233722169 TAAGTAATGTCTTGAAACACTCAGTGAAGGGAGATATTCTG---AAATGCTTTGTTAGATGCTTCTGTTTTTTGTGTAGATATCATAGAATGCATT--CACACATTTAGAAGGTATAAGTTAACAACTTGATGTGACCTCCTGATGCAATCAAGATACACAATAAAGAGAAGATACATGAAACTACTGTAGAATTAGGGTGCAATGCTGTGCCACAGTAAACCT--TTTTTACAAGTGGAAAGAGTCCTctctaaaataataatgaaaaatattgtatagTAAAGACATAAAC

a score=5311
s chr3            67013332 219 + 160039680 TAAGTCACTTAACAA---TAGGATACATTTTTGGCAAATGTATCACTAGGCAAATTTGT---TGTCTGAACTCCATAGAGTGTATTGTCACAAACCCAGATGGTGTAGGTCAGTCAGTTGACATGGCATCTTGATGTATTCAAAAGATGTACTAAGCAGGAGACATGTAAAGCTGCTGTCTGTAGATCATGCCACTCTTTCAG----ATAGTAAAC-----CTTCTCTTTAAAA
s HiC_scaffold_1 202721533 220 - 233722169 TATGTCACTGAATGAGTCTAAGAT------TTAAGAGCTGTCCTGTTACGCAGTTTTGTCCTTGTGTGAACAACATAGAATCTACTTACACAGAAGTACATGATGTAGGTCAGGCATTTACTATGGCCTCCTGAGGCAATCCAGAGATGAGGTAAACAGGAAATGTATGAGGCTGCTG--------CCATACCACACACACAGTTTTACActaaacttgtttttctttttaaga

a score=7461
s chr3            67062673 550 + 160039680 GTTATTTGAATATGTTTTTAAAAGTCATTCTATGAACTTTATTTCTTTTTGTACAATTAAGCCATGGATTCCCAGGAAATGAGCGCCAGCAGTTT-GAATGCCTTCCATTGGTCCTCA----GTGTGATTCTGTCTACTGTGGCTGGAGCAGCCTGGCTCTTTAGTTGAACTCCAGTGCCTTTCCCTTTAGCTTCC--CTTTTTCCTCCCTGGTTGTTTTTTCCTCACCCATTTCAGGAAGCTGTGT-GACTCTTAAGCACAAGCCACATAATTATTGTCTTGGGAGACTTTCAGCCAT------AATTTCTTGTGTACAGTGATGCCCGTGGCACACAGGATGAAGTGGCTGGGTGATGCAAATAGCCCTTCCTGGTTTGC-CATGACAATGCATATGAAGCATTCTTTTAGAACAGTGTTCCATGTCCTTGATGTCTATAATATCAGTCTTCTCATAGATTCTCATGTACATGGCCAAAGAAACAACTCTATGTTTCCTAAAAGGCCTAGGAAACATATAATGGTGCCCCTCCCTATTCCGTTTGTGTTTCTTCTCCTTTTGG
s HiC_scaffold_1 214914714 522 - 233722169 gttttttgtttgtttctttatagtttagtctct-ctctctctttttttttcatctactATGCTGTGGGTTCATAGGGAATAGATTTAGGTATTTCAGGCTTCTTTCCATCAATTCTGACAACATGTGCTTC-----ACTGAG--CAGATCAGACTGGTGCATCTGTTGAACCCAGGTAAGTTCCTCTTGGattttctaccttttatt------ttaattttgctttatgtGTTTCAAGTAACTATTTTGACTCCTAG---TGCTTCACATGATAAATAT------ACACATTTAGTCACCTGGCAAATATCTTGCCCTTAAT----CTGATGGTTTACAA----------CAATGTGCTGCTATAGAGGCTTCCAGTTTTGCACATTAATATTTATAGGga-ctttctttttgaacagtat-CTATTCCCTTAATCTCTAAATTATCGCCTTTCTTGTAGATTCACATATATGTGAACAGAGGAAAAACCTCATATTTCCTAAAAGGCTTAGAAGACACA-ATCAATAGCTCTCTTTACCCTCTTCATGT---GTGTCATTTTGG

a score=13297
s chr3            67062733 542 + 160039680 GCCATGGATTCCCAGGAAATGAGCGCCAGCAGTTTGAATGCCTTCCA--TTGGTCCTCAGTGTGATTCTGTCTACTGTGGCTGGAGCAGCCTGGCTCTTTAGTTGAACTCCAGTGCCTTTCCCTTTAGCTTCCCTTTTTCCTCCCTGGTTGTTTTTTCCTCACCCATTTCAGGAAGCTGT-GTGACTCTTAA------------GCACAAGCCACATAATTATTGTCTTGG-GAGACTTTCAGCCATAATTT-CTTGTGTACAGTGATGCCCGTGGCACACAGGATGAAGTGGCTGGGTGATGCAAATAGCCCTTCCTGGTTTGCCATGACAATGCATATGAAGCATT-CTTTTAGAACAGTGTTCCATGTCCTTGATGTCTATAATATCAGTCTTCTCATAGATTCTCATGTACATGGCCAAAGAAACAACTCTATGTTTCCTAAAAGGCCTAGGAAACATATAATGGTG-CCCCTCCCTATTCCGTTTGTGTTTCTTC-TCCTTTTGGT--GTGACTGGAAGATGGAGACTGAAGCTGAAA-GCAAATTTTCTTTTCTTTTTT
s HiC_scaffold_1 172799160 538 - 233722169 GCCATAAATTCAAAGGGAATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGTTCACAAAG-----CTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTC----TTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCA-------ACAGGA------GGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTAC-CCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctttccctttg----tcTTCATCATTTTGGCAAATTACTGGAAGATGGTGGTTCTGGCCAAAAGGCAAAAGTTTGTTTGTTGTTT

a score=14062
s chr3           67062773 479 + 160039680 CCTTCCATTGGTCCTCA----GTGTGATTCTGTCTACTGTGGCTGGAGCAGCCTGGCTCTTTAGTTGAACTCCAGTGCCTTTCCCTTTAGCTTCCCTTTTTCCTCCCTGGTTGTTTTTTCCTCACCCATTTCAGGA-----------AGCTGTGTGACTCTTAAGCACAAGCCACATAATTATTGTCTTGGGAGACTTTCAGCCATAATTTCTTGTGTACAGTGATGCCCGTGGCACACAGGATGAAGTGGCTGGGTGATGCAAATAGCCCTTCCTGGTTTGCCATGACAATGCATATGAAGCATTC-TTTTAGAACAGTGTTCCATGTCCTTGATGTCTATAATATCAGTCTTCT-CATAGATT--CTCATGTACATGGCCAAAGAAACAACTCTATGTTTCCTAAAAGGCCTAGGAAACATATAAT--GGTGCCCCTCCCTATTCCGTTTGTGTTTCTTCTCCTTTTGGT--GTGACTGGAAGATGGAGACTG-----AAGCTGA
s HiC_scaffold_1 59695669 477 - 233722169 CTTCCCATTGGTCCTCACAAAGTGTGCTTCTCT-------GGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttc---ctgatCATTTTC-CTTGACACATTTCAGGATGTTATCCCAACGCTGAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAA--CTTGTTTACTGTAGTGCCAACACCAT-------------GCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTAT-CCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgt---TTGTCATTTTGGCAAATTACTGGAAGACAGTGGTTGCAGATAAGCTGA

a score=8069
s chr3            67082533 190 + 160039680 AGGTCCAGGTCAAGGCCTCGTCCACGCTCACATAGTAGAAGCAGTGAAAGATCCAGTCACAGAAGAACCCGTAGCAGGTCcagggacagagacagacgtaaagtccgggacaaagagaaaagagaaaaggagaaggataaaggcaaagacaaagaAGTGCACAGCATCAAACGCGGGTGAGTTGAAACAT
s HiC_scaffold_1 203278121 187 - 233722169 AGGTCTAGTTCAAGACCGTGTCTGCATTCTTAGAGTCGAAGCAGTGAGAGATGCAATCGTAGGAGAA---ATAGTTGGTCTGGGGATAAAGACCGATGTAATGGcagagataaagagaaaagagtaaatgagaaggagaaagggaaggacaaGGGGTTACACATCAAACAGCAAAGCTGGATTAGGGCAT

a score=10850
s chr3            67547065 400 + 160039680 CTCTTTCCACCATCTTGGAGCTTATGGAGACCTCCTT---GAGCAGAA------ACCAGCAAATGTATCTTGAAGGCTGTGGTCCGAGACTATTTCTGCTT----TTATTGGGAGCTTTGGAAACAGAGGGGTCAGGAAATGG-----AAGAAAAAAAATGAACAAGTCTCTCTTTTTGGAATGGAGATGAAACTAAATTCGATCTGGGCAAAACATAAATGTAGAGTCACAAACAAAAACACGG------ACTCTCAGTGGCAAACCAAACAAAACCAGAGTAAC-TGGAGAAAGGT---TCTGAGCACAGATGGAAAGATCAACAGGATTCATGCTAAATTCCTGAGCTGCCTTCCTGCCAAGGCCATTGGGCACAGAACCCATGCG-TCCGGTAGGCACCGAGGTCTCAAATTCATAGAAAAAAAA
s HiC_scaffold_1 219976717 411 - 233722169 CTTTTTCCACCATCTTGGAGCCTGGGGAGGCTCCTGCTGGGAACAGGACTTCTAAAAGGCAAATATGTCTGGAAGACTGTGGCACAAGGCCATTTATGCTGGCTGTAAGTGGGGTCTCTGGAACCAGAGGGAACACACAGCTGTTCTTAAAATTGAAGATGCTTATGCCT--------------GAGATGAAACTGAATTCTACTTGGGCAAGAGATGTGCTTATGTCTACAAAGCGAAAAACAGCACAGTGATGCCAGtggcaaaccaaacaaaacaagagtgATGTGGGGGAAGGTAACTCTGGCCC---ATAGAGACAGCGGCATGGTTTGTGCCAAGTTCCAAAAAAACCTTCCTGCTAAGGCCATTGGACACCGAATCCATGTGATGCTGTACCCTTCAAGGATTT-AACTAACGGAAAATAAA

a score=6893
s chr3           67573117 177 + 160039680 GGTGCTGGACTGGTGTGGCCTCAGGCTTGCTTGTTCTCAAGGG--------ATGTCAGGCAACTTACTAATCATCTAGATGTTCACAAGTCAGCACACTGAGCATAGACGTAGCCT--CTCTTCTCTGCCACCTAGTGGTGGACATGTG--ACAGCAGCCACACCTGCAATACTTCTAGGGGAAGGGTG
s HiC_scaffold_1 39210446 179 - 233722169 GGTGCCTCACCCACAAGGCTTCAGG------TGGCTGCAAGGGCACTGGCAGTGTCAGGC----TACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAGTGTG

a score=10977
s chr3           67867930 404 + 160039680 AAAGTGTAGTCGCGGCAGCTCTCTGACATTCTACTTTATTAGATGTCACTTTATAATTAAAAATTTGAGTGGCAGAAGTATGAGTGCCCAGAAAAATGATCTGGACGACCATCATGCTTTGCAGCCATATTCCGGGAACAAAGATGAGACTCCAGCACAGAATACTGTGTTCATATTGACCATTCTTTTCCTTCCAAAAGATGAAGAAAGAGAAAATGCTCGA-GGGTCAGGATTGCAGAGAGGGAAATTCTTATTTGAAATGCCATTGAAACCATCTCCTACCATGTAACGCTTCTACAGGGTTGAAGCTATAGATATTAGAAGCAAAACAAAAAGAGCCAGACACCCTGGGGGAAGGCATCCATCTTGATTATGAAATTAATTAGAAAAATAAAAGTGCTTTT
s HiC_scaffold_1 16713091 353 - 233722169 AGAGTGTAGCTGTGGCAGCTGTCTGACATTCTGCTTCATTAGATGTGAATTTGTATGTACAAGTTTTAGTGGCAGAAATATGTGTACCCAGAAAGGCAGTTTTGAGAATCTTAAT-CACTGCAGTAATCATC---AAGCAAA-------------TACATGATACTGTG---------------------------AGATCCAAACAGGGAGAAAATGCTTTAGGGGTTAGGTACTTGAAGAGGAAAATTTGTATTATAAATATCATCAAAACTATCCTCtacaagataaaatat--------taaaagcagcagatattcaaaacaatacaaagggaGTTTAATAGCCTACAAGAAGACATCAGTATGTATTATGAAGTTAAGTTGAAGCACAAAAAtactttt

a score=4259
s chr3            67896137 117 + 160039680 TCTTTATAAACCGTGTTTTATA-------TGATTATT--------GGTGCATGTTAGTTGGACATATTAATGAGTTTCAAAGTGACAGTTCTGTACATACAAATTACATGCTTCGATTGTATTCACCCTCCC
s HiC_scaffold_1 202684930 128 - 233722169 TCTATATaaatcatgctttttaaaaaaaataattattttttgattAGTATATATTAGTTGTACATATCAATGGGTTTCAATGTGATATTTCTACACATACA----GCATAAACTGATGACATTCAACTTTCC

a score=21270
s chr3            68308749 465 + 160039680 AACAAAAAGCACAGGGTTTTATTTCTCAC------CCTTTGGGCAG--GGTTCTTCAGGCCTTTGCAGGGCAGGGAGCAGGCTCTACTTGCCAGTGATGAGCGGGTTCCGCAGCACCACGATGACCGAGTCCCCACGCAGGAATATCTTGGAGATGTAGCAGTCCTTGTTGACAGGCTTGGACTTCTTCTTGCCCTTGCTGCTCTTGGGGACCTCAGTCCACATCTCCTTCACATTTTCCAGCACCATGTTGCAGTGCCTGTCAAAGGCCTTCACCCGGCCCAGCAGCTTCTTCTTGTTGCGACAGTTAATGAGCACTTGCGTGTTGTTCTTGACCGACTGCGAGAGCACTGAGAGGGGACCTGTGTTGAATTCCTCCTCCTCCCGCTTCTGCAGCTCCTCTGGGGTCATCTCACTCTTAGGTTTATTGAGGAGACTCATGGTGTAGGTTTCGCTCGCAGATCACTCCCGCCC
s HiC_scaffold_1 189510229 437 - 233722169 aacaaaccacacAGCGTTTTATTG-TCACTACAGTCATATGGGGAGCAGGTCCT---GACCT--------CAGGGAAGAGGCCCTGCCTGCCAGCAATGAG-AGGTTCTGCAGCACCACCATGAT-----------GCTGGGTCGTCGTGGAGATGTTGCAGTCCTTGGTGACGGGCTGCGACTTCTT---GCCCTTGCTGCTCTTGGGGACCTTGGTCCACATCT---TCACGTTCTCCAGTACCGTGTTCTTGTGTCTGTCACAGGCCTTCACCCAGCCGAGGAGTTCCTTGTTGTTGGGGCAGATGATGAGCTCCTGGGTGGTGTTCTTGACTGACTGGGTCAGCACAGAGAGCGGACCTGTGTTAAAT------TCTTCCCACTTCTGCAGCTCCTCTGGCGTCAGCTCACTCTTGGGCTTGTTGAGGAGGCTCATGGTGGCAGCTGCGACCTCTGGTTACTCTAGTCC

a score=16629
s chr3            68308796 411 + 160039680 CAGGCCTTTGCAGGGCAGGGAGCAGGCTCTA--------------CTTGCCAGTGATGAGCGGGTTCCGCAGCACCACGATGACCGAGTCCCCACGCAGGAATATCTTGGAGATGTAGCAGTCCTTGTTGACAGGCTTGGACTTCTTCTTGCCCTTGCTGCTCTTGGGGACCTCAGTCCACATCTCCTTCACATTTTCCAGCACCATGTTGCAGTGCCTGTCAAAGGCCTTCACCCGGCCCAGCAGCTTCTTCTTGTTGCGACAGTTAATGAGCACTTGCGTGTTGTTCTTGACCGACTGCGAGAGCACTGAGAGGGGACCTGTGTTGAATTCCTCCTCCTCCCGCTTCTGCAGCTCCTCTGGGGTCATCTCACTCTTAGGTTTATTGAGGAGACTCATGGTGTAGGTTTCGCTCGCAGATCACT
s HiC_scaffold_1 120922487 415 - 233722169 CACATCTTCACAGGGCTGGGAGCAAGTTGTGACAAGTATAAAACCCCTACCAGTGA---ATGGATGTAGCAAAACTTGGTAGACTGAGGCTCCACACAGGGACATTGTGGAAGTGGACTGGTCCTTGTTGACCAGCTTGGACTTCTT---ACACTTGCTTCCCCGAGGGAACTCAGTCCACATCTCCTTCACATTGTtcagcactgtgccactgtacCTGTCAAAGGTCTTTAGGTAGCCTAGGAGATTTTTGTTGTGGAGA---TTGGTGAGCACCTAAGGCTTGTTCTTGATGGACTGCCTCAGTGCAAAAAGTGGATATGTGTTAAATTTTTCCACCTCCTGCTTCTGCGGCTTCTCTGGGATTATCTCACT-TTGAGCTTGTTTAGGAAACTGGAGGTGGTGACTATGTTCTCAGGTCACT

a score=4820
s chr3           68760378 169 + 160039680 TTTCATTTACATCCATTTTTAATCGCAAAGTAGTATCAGACAATACTTTTT---ATACAACGGGTTAGGTGTTTTGTTGATTGGAG-----GAGGTTGGCTTTGCAGACAGGGAAGGGCTGAAGAAAACAGAAACAAAAAACAAAAAGTAGATTGGTTGTTTCAGACTCACATTCCT
s HiC_scaffold_1 14977690 171 - 233722169 TCttacttaactttattttttattc-----tagaaCCAGgcaatattttcttcaataagATAGAAAAAATGGCTCAGGGAACCAAGCATGGGAGATTGGTTTTACAGACAGAAAAAAGCTGAAGAATGCAGAAACAAAGAGGAGAAAGCAGACTGG-TGTATCTAAGTCACTTTCCT

a score=5411
s chr3           68807326 295 + 160039680 TCCTCACCCAAT-CAAGGGTCACAATCAACATTCCCATAACCAAGGTTAATAAG-AGGAAAGCAGGAGAAAGTTGT-------GCCAAAG----GTGCTATGACACAGAAGACTCCAGAAATAAAGACCTAAAGATCCAGGGGAAATGGTCTACTTTTAAGCTTAGATTCTATAGCAAATAGACAACCTTGTAAATGTGTAACTAAATGAA--------------------------------------------GTAGTTTATTCTGATGAAATAAACA-----TCTTCGTACTGCAT----CCCTCCTAGGTATGGGGCAGGACCCCTCTGGAATAAGAGCCTTTGTGGGGAAATGAAA
s HiC_scaffold_1 68790622 357 - 233722169 TCCTTACCCATCATAAGAGTCACAGTCAACACACCTacaataaaagataattagcaagaGAGAaccacaaatttatttatttaatcaaaattttGTGTCAGGA---AGGAGGCTTCAGAAGTGAAGACTCAAAACCCAAGGGGCAAAAGCCTGTTTTGATGCTTAAATTCAATGAAGAATGGACAGACATTTGGAAATGGAATTGAACAAAGAGTGGGAACTAAGGGTAATAACAGAGGCAGAAAGCCAGCAATGGTAGTCCATCCATTTAGATTACTCATGGCTTCTCTGTATAGCATTTACTCCTCCGGGGTAT-GGGCAGAATTCCCTTGCAATGAGATCTTGAAAGGAGATAGGAGA

a score=4166
s chr3            68807558 110 + 160039680 TGCATCCCTCCTAGGTATGGGGCAGGACCCCTCTGGAATAAGAGCCTTTGTGGGGAAATGAAATGTATTAGCATTGCCTGatgtagatgttgggaattgaacctgggtcc
s HiC_scaffold_1 101487086 105 - 233722169 TGCCTTCCTCCCGGATATGGGGCAGGACCCCTCTGGAATGACAGTCTTCAAGGGAGAAGGAA--GGATGACGTTTTCTTTAT---GGTGCTGAGAATGAAACCCAGGGCC

a score=12052
s chr3            68812191 916 + 160039680 CAGCCTCATACATATTGGGTTTGCT-----GATCCTTTAAAAATCATTGTCTACTGTACTTAATTCTATGTTATTCACTGTGGCCCTTAACCATACAGAACCCACTGCTACTCTTACTGGTAAGATGTCACATTGAGAGATGGACCTGAAAACAAGATAATTAATAACTGCAGAG----TGAAAAATCCATGCTGGTTACTGCTCA------------CTGGCCAGGCACGTCCCATCTC-------------------AGCATAGATACAGATACCACTGAAGCTTC------ATTTACTTTATTAAAAACAGCAAAACTAATCAAGGTTTGAGAAGGGCCTAGAATGTGTTTGGAGAAACTCTTATTAACCAGAACTAATACCAAAACACAAGATTACGTCCCCCCAAGCACCGTGAA---TAAAGCAAGAGGGAAAGTTGTCT--ATGATGTTAAAGGAAGAGGCTGACCCAGTCACCG-TATTGAATTTACAGCTAGCCATGGCTGGTTGAAACTACTCAGGAATCATTATGCATT-CATTACCTGATGTGAAAGTCAGTGTGGAATCTGCCAGTGCTGGTGTGAAGCCAGATAAAGAATATTTGAAACCTATAGATAAGTTGGTCCT----AGAGGAAA--ACTCACTGGAGCAAGTCTTTAACCTGGGCGGAA-TCTCCATATTCTGAAAATGATGCCTATGAGGACTGGTTGCCCTCCAAGGGAACAAAATCACTGCGAAGCTTCAAGCTCTTGAAGGACAAGACAACAGAGCTGCCTAGACATGTTGCTGCAGGCACAAATACAAACCCTTTGGTAGCTGGCACAGCGAGCA------------------ACCATTGCACATGCTGTCAATGTGCCACAGGAACAGTAAAAAG--CTGGGTACAACTCAGGACCTCTTCCAACATTCCCTCCCCAATTGCTCTGCCAGCAAAATGGACAAGTGCTGTTTAGAGAAAATATGTTTCACG
s HiC_scaffold_1 208163269 961 - 233722169 CAACCTCATACATTCCATGTTTACTCTCTTTATTGCTTAATCAT-ATTTTTTGCTTGATTTAATCTCATTTTATTCATTATGTACATGACACATACAAAATCCACTATTACTGTTATTAGGAAGAGGTCACATTGAGTTACTATTCTTGAAA----ATGATTAATAACTATGAAGTTTATAAATAACCAGTGATAGCTGTTGGTCAGGCATATCCCATTTATTTAGGCATATCCCACTCCCCTAGAGCTGTGGTCTTAAAGAATAATAACAAA-GCAATGGAAGCTGTTAAAGGATGTGC--CACTGAAGATGGTAAGATTAACACAGATTCAAGACGGGTCTAGATCAGTAATGAAGGAACTTTTGTTGGTCCGGATTAAAAACCACAGACAGAAGCACAGGCATTTTGGAATCATGAGAATTACTACCAAAGAGAAAGGTTTCTTCATGATGCAGAAAGAACAGTCTGCATCAGACAATGATACTAAGTTTTTAAGAAGCTCCAAGTACCTCAGACATTCCAAGAAT-GTTACACACTACATTACGT---------GCAAGTGAGGAGTCTGTGAGTACTGACGTGCAGGCTGTTGAAGAATTTTTGTGAACTCTACATAAGCTTATTATTTTAATTGGAAATTATTTACCCAAGCAAATCTTCAGTGCAAGTACAAGTTTTCAAACCTAGAGCTGGATGCATGAAAGTA----TTGCAATCCATTGAGGTCACGTTTATGTCAGGTt------tatagaagggaaaaataacaatTTCATTTGGGCA-ACAAACGAAGCTACAACTTGAAGTCCTTTGTGACCTGTTGTAGTGAAAACACCTGGGTCTATAAAGCACAATGATAAACACTGCCCATGACCTACTGGAGAAATAAGAAGTCCTTGGT---GACCAGTTCTTCTTGCAAAATTCCCTTATTAATTATCATACCAGCAGAATAGAT---TATTGTTTGGAGAATATCTCTTTCACG

a score=3901
s chr3            68820948 64 + 160039680 AAAAATCCCACCTTTTAATATTGCAACAATGGAAATTAAATTTCAAAATGAGTTTGGAAGAGGA
s HiC_scaffold_1 171421619 64 - 233722169 AAAGATCCCGCCTCTTAATGTTTCTATAATAGCAACTAAATTTCAAGGTGAGTTTTGAAGGGGA

a score=13742
s chr3           68846000 253 + 160039680 CAGCCTGACATGCTGCGCGGTCCCTCAGTCTCCTGCCGTCGTCGTCTCCCCAGGCATGGCACAGGGCCTTGCCACACTATGGCAGCAGCAAGACACAGCACGCTCGACTTCACACTTGGCGCCAAAGCTGATGGTGAGGCCATTCTGAAAGGTCTTCAGTCCATTTTTCAGGAGCAGGGGATGACAGAGTCAGTGCACACCTGGCAGGACCATGGATATTTAGCAACTTACACGAACAAGAACGGCAACTTTG
s HiC_scaffold_1 51264693 245 - 233722169 CAGCCTGATTTACTTCATGGCCTC-CAGTCTCCTGCGGTTGCC-TCCCCCCAG-CATGGCACAGGGCCTTGCTTCACTATAGCAGCAGCATGTCACAGCACATGTGATTTCATGATAGGCCCCAAAGCTGATGGCGAGACCATTCTAAAAGGTCCACAGTTCATTTTCCAGGAGCAGAACATGGCGGAGTTGGTGCATATCTGGCAGGACCATGACTACCTAGCAACCTACACAACCTA-----GCAACCTTG

a score=3793
s chr3           69271293 91 + 160039680 ATCTACTGTTTTGCACCGACCAAAAGAATGTAACAAAGGTAATGGGAAGTACTTCTGTGATCGACATTTGCTGTAGAAGACTGTCTTGCTA
s HiC_scaffold_1 62958025 91 - 233722169 ATCTGTGATTTTCTCCTCACTAATAGAATGTGGCAAAAGTGATGGGAAATGCTCCTGTGATTATTCTGTTATGTAGCACTCTGTCTTGCTA

a score=29085
s chr3           69320012 607 + 160039680 ACTTTATCTGCATTTATTTTATGCTGAATTTATTCCCAGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT-------------------------------------------------------------------------------------------------------CCTCCTCTTCTGGCTTTGGAAGGATCTGTTCCCTCT-CAGTGAGGATCATCAC--TGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTCAGTGACTAGAGAATCTACATCTAAACCCTTAAGTTCAGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTGGCCACCGACCCTGTGTCCAGCCCCACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCTGGAATGGCACACATTGCTTCTTTAAAGTGTCGTCCTTCAGACACTTCGTGGCTTTGCGGATATGCATACACTTGATGGCCGGGGCAGTTTCCCAGGTGTTCTTAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGA-TTTTGTGGGGTTTTCTGGGTCAAGAGAGTATTGAA-CCATA-------------------------TTCGCAGGTCACCTCTGGCCGATTACAGGAAGA
s HiC_scaffold_1 56901797 722 - 233722169 actttatttgcatttattttatatttcatttactcTCAGATCgtaagtttttgtttcttcagttttttctgggatatctttttctttttggtaccaggaatcaaactcaggaccttgtgcttaccaagcaggtacttatggcTCTGAGCACTATCTCCTGCCCTGGGATACTCTTGTGTTTGATGCAACCTCCTCCTATGACCTAGGAACTATTTGTTCCTTTTTCAATAAGGATTATCTCCATGTGGCAGGGGAA-CTCAGGTATTCATTAGTTAGATCACGAGCTC------------AGCGCATCTTGGGTGCTTTGTTTACCTGGATTCGTTCAATGACTAGAG--TCTACTTCTAAACTCTTAAGTTCATCATTAGTCTTTGCATTTCTAAGCTCATGCAGCAAAAATTCAGCACTCTTTTGGGGTC-TCAATCCTGTGTCTAGCCCT--CATTTGGCTTAAGCACACCTACCAAGTCCACCACTAAAATGGTGGAATGACACACACTGCTTCTTTCAAGAGTCACCCTTCAGATACTTGGTGGCCTTTTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCACAGAGATTCTTAAAGTGAACACACAGATTTGAGTCTCTTGATTTGCATGGTTTTTGTAAGGTTTTATGGGTCAAGAGAGTAGCAAATCCCTACTTACCAGGGAGAAGCCTCACTGGTTTCACAGTTCACTTCAGGCCGTTTATATGAAGA

a score=28168
s chr3           69335192 601 + 160039680 TTTATTTTATGCTGAATTTATTCCCGGGCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCT-------------------------------------------------------------------------------------------------------CCTCCTCTTCTGGCTTTGGAAAGATCTGTTCCCTCT-CAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCATGTATGGGTTAATCCGGCCATGAGCTCTGTAGGTTTGTCAGTGCATCTTAGGTGCCTTGTTCACCTGGATGTGTTTAATGACTAGAGAATCTACGTCTAAACCCTTAAGTTCGGCATTCCTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAGCACTCTTTTTTTTTTGGCCACTGTCCCTGTGTCCAGCCCTACTGTTTGGCCTGGGCGCACCTACCGACTCCACCATTATACCTCCGGAATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCCTAGGTGTTCTAAAAGTGAACACGAAGGTTTGGACCTCTTGATTTGCATGA-TTTTGTGGGGTTTTCTGGGTCAAGAGAGTAGCGA--------------------------ACCATCTTCGCAGGTGACCTCTGGCTGCTTACAGGAAGA
s HiC_scaffold_1 56901809 710 - 233722169 tttattttatatttcatttactcTCAGATCgtaagtttttgtttcttcagttttttctgggatatctttttctttttggtaccaggaatcaaactcaggaccttgtgcttaccaagcaggtacttatggcTCTGAGCACTATCTCCTGCCCTGGGATACTCTTGTGTTTGATGCAACCTCCTCCTATGACCTAGGAACTATTTGTTCCTTTTTCAATAAGGATTATCTCCATGTGGCAGGGGAA-CTCAGGTATTCATTAGTTAGATCACGAGCTC------------AGCGCATCTTGGGTGCTTTGTTTACCTGGATTCGTTCAATGACTAGAG--TCTACTTCTAAACTCTTAAGTTCATCATTAGTCTTTGCATTTCTAAGCTCATGCAGCAAAAATTCAGCACTCTTTTG-----GGGTCTCAATCCTGTGTCTAGCCCT--CATTTGGCTTAAGCACACCTACCAAGTCCACCACTAAAATGGTGGAATGACACACACTGCTTCTTTCAAGAGTCACCCTTCAGATACTTGGTGGCCTTTTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCACAGAGATTCTTAAAGTGAACACACAGATTTGAGTCTCTTGATTTGCATGGTTTTTGTAAGGTTTTATGGGTCAAGAGAGTAGCAAATCCCTACTTACCAGGGAGAAGCCTCACTGGTTTCACAGTTCACTTCAGGCCGTTTATATGAAGA

a score=4741
s chr3           69526885 192 + 160039680 ATCTCACTGCTACCCCATCCAGTGACTTTTAGACTCATGTAtccttctttccttccttctttccttccATTACCACCAAGTCCTCCTGGGTGGA--------CTGTAGTGAGGTTGGCTTCACCCAGGAGTCTCAGAACAGCAGCCACCTTTAGAAACAGAACCATATTCTAGGGTTTACAATTTAGTCTCCCTTTCCCA
s HiC_scaffold_1 72388221 183 - 233722169 atctCACTGCTATCTTGCCCAGTGGTTTCGAGTTTGATGCAGTCGCCTTCCTTCTCAGTCTT---------------AAGTCCTC--AGGTGAAAGTGTTACCCCCTGTCAGGATGGTTTCACCTAGGAGCCTCCGCACAGCAGTGTTTTGGGTAGGCAGAACCTCTATCTGGGATTTATAAATCCATTTCCTTTCCCCA

a score=8610
s chr3           69688676 176 + 160039680 TCTTCCTCCTCTGGGTTTGATTTGATTTGATTTTTATGAGTCCTAGGCATAAAACAGCTTTGGCCACCAAGCCAGCCATCAAGCT-GGAGGGACAAAGGACCGCCCTCTGATCTGCCCCTGACTGATATGAGAACACCACCACCAATAATGTGGTTTTTTGCCCATTGCCGGGGGAG
s HiC_scaffold_1 37912066 176 - 233722169 ttttgctcttattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGggg

a score=5192
s chr3            69694076 244 + 160039680 AGACCTTGTAGAGTGAGCTGGCCTTCTCAGGAATTATAAAGTGAAGCCCCCCAACCCCTACCCCACACCACATGAGCTTGGC-TCTGAACACATATGGCCCAGGCCCTTTGTACGTTGCTGTGCTATGATGCAGCCAGGGGATCCTTACCAG----CTTGAAGGTTT----------TCTTAAACc------ctccaaaa-tgtaaactagataaaccttatttctttatgaagtgcccaacctcaggtaatgtattagagcaaca
s HiC_scaffold_1 201938673 235 - 233722169 AGACCTTGCACTGTGAGTTAGTCCTCCCAAGAGC----AAGTTA-------------CTACA--AGAATATGTGAGCCTGACCTCTGGATCT------------CCATTTCCACATTGCCATGCTGTGATGCAGCCAGGGAATCCTCACCAGAGGCCAGGCAGATGCAGCCACCCAGTCTTggaccctcagtctccaaagctgtgagctaaataaacccctTTTCTGTACAAATCATCCAGTTTGAAGTATTTTATtacaacaaca

a score=16069
s chr3            69716919 501 + 160039680 TCTTTATTCTTTTTTTTTTTCAGTTTTTGTGATTTTATTTAAACACAAA---ACATGTACACAAGCCATCTATTCATTTTCTTCGCTGTGTAGCCTGGTGTTGGGATTGGTGACTCTGATGGCCAGCTGTGCTGCTCTTTCTACAATGGCTTTTCGGTTCTTAGAGGACACGTTGTGAGCAATCTCAGCACGGTAAGATTTGTTGCACATCAACAGCACCTCCGGCTCCTTGATATTGTGGACCAGGAACTTGCGGAAGCCACTAGACAGCGTGTGCTTGGTTTTCTTGTTGCTCCTGTAACCGATGTTGGGCATCAGGATC-TGGCCCTTGAACCTTCTCCGCACCCTGTTGTCGATGCCTCTGGGTTTCCTCCAGTTCCACTTAATTTTCACATATCGGTCTGACTGGTGTCTGATGAACTTTTTGGTCCTCTTTTTGACGATCTTGGGCTTCACCAGAGGCCGGAGGGCAGCCATGATGCTGCATAACAGAAGGTAGCCACC
s HiC_scaffold_1 194320329 465 - 233722169 ttttttttttttttttttgccagtctTTGTAATTTTATTGAAGCGCAAATAAACACGCAGAGGAGCAGTCTACGCGTTTGCTCTGCGGTGCAGCCTGGCATTGGGGTCGG-GTCTC-GGTGGCTGTCCGGGCCGCTCTTCCCACCATGGACTTGCG-TTCCTGGAGGAGACGTGCCCCGCAATCTCTGCGCTGTAAGACCCGCAGCCCAGCGGCAGCAGCTCCGGGCCCTCCACGCCGTGCACCAGGGACTC-TGGAAGCCCCT-----GCGGCCGCGCTGTCTCTCTGCTGCTTC------CTGCGCTGGGCATCAAAGTTGTGGGCCTGGAACCCTCTCCGCGCTGTGCTGTCCACGCCCCTGGGTTTCCACCCCTTGCGCTTAATTTTGACACAAAGATCTGATCGGTGCCCGAT------------------------GATCTTGAGGTTCACAAGTGGTCTGAGGGCCA-CGTGGTGCCCAGTCAGAGACAGTTGCCACC

a score=26112
s chr3            69804765 1032 + 160039680 CCTCACTGAGGGGGCAAAAAGGTCATCATGAGGACTGACTGGGGAACAGTGAAATGGTTCAAAGTAAGGAACAGA-----------AGGGAGCCGGTTTCATCAACAG-AATGACACCAAGGAAGAGGTATTTGTACACCAGGCTGCCATAAAGAAGAATAGTACCAGAAAGTACCATCGTAGAGTAGGGGATAGAGAGACAGAGGAGTCTGATAATGAAGGAGAAAAGGGTGCTAAGACAGCAGACATTACAGGCTCT-GTGGAGTTCC-AGTAAAGCCAGTATATGTGCAATAGACCATAACCATTATAGATGCTATTCATATCTGTAGAGGGTGGTTCAGGggaagatttagaagtgcccagcactgagttaacaaaggcattttaagaataactggagtgtgtgtgtgtgtgtgtttcctattcaaggatctgagatcctgagtaggtgagcacatgcgactcgcagggaacttaaagtggtgtagacaaaacaacatgcACACATGTTGTTACAGTCCTCCATACAATTACAAACAAAATGGCCAGAATAGTGAGAGTGGGGAAAAGAATAGGGTATCAGAGAGGGCTCCTGAAGGCCAGTCCCTACTACAGGAAGCAAGCCTTACTAC----ATGCAGAGAGTCTAGGGGCGTT--AACTACACTGTTCCAACCCTTCTTTTCAAGGA-AGATGCTGACAACCAGGGTGCAGGAGAGCAAGGCAGATCAGCGAGACAAAATATACATTGGGATTACAGACGAC---TCCGTAGGGACTTTCCTT------------CTAGAGAGTACCGCAATGAAGAGGAAAAGAAAAATCAAGAAGAGGAGCCCCAGGGTCAGCATCCTTCTCA------GCATTATGTCA----TTGGTATCAACAGAG----------AACCCTAAACCACAAAGATGGCAGAGAG--CAAAGCAATTCACCCACTAGGGGAG-AATTCATCTGCTTCTGGGGATCAGTAGGGCAAAGGTAGTAGATGCCAGTTTACCATTTCAACCACCGTCTGATTTGTTCATCCAACAAGaacccagacactaggcagatgccaacaa
s HiC_scaffold_1 207134163  885 - 233722169 CCTACCTGCAGGGACAAGACGGTCAT-GCAACAAAGGTTTTGGGAGCAGTAAAATGGTTCAATGTAAGAACCATGGTTCAATGTTGATGAACATGGTTTCATCAACAGGAATGACACCAAGGAAGATATACTTGTACACCAGActactataaagaaaaataaccccAGGAAGTGCCTTCGCAGGGTAGGAGATGGAGA--CTGTGGAGTCTGATGTTGGAGGAGAAAAGGGTGCGGAGGCAGCAAACGTTACAGGCCCCGGTGGAGCTCCGATTCAAGGCAGTAAATATACCCCAGACCGTGACCATCACAGACGCTATCCAGG---------------------------------------------------------------------------------------------------------------------------------------------TCGCAGG----------------------------------------------AGTCCTCCACGCAGTTACCAGCAGAATTACCAGAATAGTGAGACTGGG--AAAGAATGAGGGATGGGAACACGCTCCCCAAGGCCAG-CCCCACTGCAGGCGAAGGTTCCCACCGCTCTACTACGGAGACCCTGTGGGTATGGAGACCACAGTATTCCAGCCCTCCTGTGCAAGGACAAGTGCAGACAACCAGGGTGCAGGAGGTTAAG----------GAGACAAAATATGTACCGAGGCTGTAGACCACTATTCCACAGGGGCCCTCCTTGCCAAAGTCAGCCTAGAGAAAACAATAATGAAGAAGATAAGGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGCCACCTCAACTTCGGTACTGTGGCAACCTCCATTATCAGCGCAGACGCTCACAAAACCCTAAACCAC-ATGATGGCAAAGAGACAAAAGCAGCCCATCCACCTGCTGAGAAATTCATCCGCTCCCCAGGCCGAGCAGGGCGGGGCTGAGAAATGCCAGCTTAACATCTCCACTATCATTCGGTTTAGTCATCCAGCAAGAA--GAAACAAATAGGAAATTCCAGCAA

a score=19829
s chr3            69808462 628 + 160039680 TTTTCTTTGGCTTGAGAGCTTTGAGCATTCTTATAGATGATTTATAAAGGTCATCTATTGCTAGGGATGTTCTGTTCAGAACCCAACCCAACAAAGATCTCATCCCTTCCAAATCAGATCGTGGCATTCTGTAAGCAGATTTCTTCAACAGCCACTTATCATTTACAAAGTAAACATTCCCACTCAGTGCAGTGAAGTG-AGAACACGCTTGAACACGTCCAGCTGGACCTGTGTGATACTGTGCCGCCTCTGACGAAATCAACAAGA--ACTTTTAGTCTTCTATACTCTTTCGCGAGTCCAAGTCACTACTGGCAAGTATTTAATAGAGGGTTTTGTACCCCTCAGGGCATTTACTATTCTTAGAACCTTTTAGAGACACAAGTTTCTCAGTACTCAGCTCAGTCCTATGCAGTACATAGTAGTCATACTTCCAACATA----TAGGCTGTTGG-CAGCCTCTTATTGTGGGCACTTAACATGAATAAAGATCAATTTGACTTCTTTGAAAAGAACTGTGGTGGCATCTGATCCTTGAATGGCATTGTAGCACTTTCTTTTTATACAG-----TGTATGAGCTTCTCTGGGTAC---------------CCTGTGGCACT--TGCCTTTTCAGCTCTTCC--TAAGAAGCAGGGCatt
s HiC_scaffold_1 113238271 634 - 233722169 tcttctttgactTGAGAGCTTTG-GAATTTTCATAGATAACTTATAAATGTCACCTGAGTCCAGGTGTGTCCTCCTCAGAACAAGATCCAAGTAAGGTCCCATCTCTTCCAACCCAATCTACGGTGTTCAGCAACCAGATTTCTTCTACAGCAAC-------------------CCTTCCTCTTCAGAGCAGTGAAGTGCAGAGTGGACTCTAATGCATCCAGGCAGA--TATTTGCTACTGTGCAGCCTCtgaaaacatcaataaaaagacatttagtcttcTGAATCATCTGTTATATCAAAATTTTCACCAGTGAACA-TTAATAT-GAGTTTTGT-TCCCTCAGGACACTAACTGTTCTTACTATCTTTTAGAGGCACAAATTCCTCAATACCTAAATCAATCATATCCAGAACATGATAATCATACACATGACCTACTACTAGGTTATTGGATCGCTTCTTATTATGGGatccaaatgtgaataaaaa-aaatctgacttcattgaaaagaattcCAGTGATGTCTTATCCACAAATGGTctttaatacttttctttttatacagAACTCCATATGATTTTTTCAGTGCATATACATTTTTAAGTACTTGTGTCACTGATGCATTTGCATTTCCCCCTTTAATCAGTATggtatt

a score=7247
s chr3           69962311 133 + 160039680 GGGAATCTTAGGCTACTAATCATTCAGTTGTTCACAGGTCAGAACACCTAACATAGACGTGGCCTTTCTCCACTCTGCCACCTAGTGGCGGATATGTGACCCAGCA-CCACTTCTGCAATGCCTCTAAGGGCAG
s HiC_scaffold_1 39210487 134 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=8220
s chr3            70059644 239 + 160039680 AAGAGTAAAGGGTAAAGAGACTCCATTCTCTCCTC--TCCTAAGAGTTAATCTTGTTGAGTTCTTATCCTGTGGCACCTCCTAGGTGGTTAGCCATGTCAAGATGAAGCTGAACATCTCCTTCCTAGTCACCATCTGTCAGAAGCTCTCTGAAATGAATGATGAACTCAAGCTTTATACTTCCTATGAGAAGCACATGGCTACAGAAGTAGCTGCTAACGTTGTGGGTGGAGAATGGAAGG
s HiC_scaffold_1 154206109 219 - 233722169 aagatttggggaaaaaaagatttgGGTCTCCTTTTAGTCCTTAGAgt--attatgttaaatttttaaccCT---CTCCCCTTA-------ATCCTT----------AGCTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGG

a score=13319
s chr3            70059880 346 + 160039680 AGGGTTCTGTGATCTAGATCAATGCTGGGAAGGATACACAAGGTTTCCC-ATGAAGCAAGTTGTCTCCACCCATGGTGTGATGTGCCTGCTATTGAGTAAGGGGCATTCTTGTTATAGACCAATGGGAACAGGAGAAAGGAAGCACAAGTCTGTTCACAGATGCATTGTGGGTGCCAGTCTGAGGGTTCTTAAGTTGTTTATTGTACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGAGAAGGGCATTCCTGGACTGACAGATAGTACTGTGTCTCAGTGGGTTGGGTTCCAAAGGAGCTAGCAGAATC----------------------AGAAAGATGATGTTCACCAGTGTGCTGCCAGCAAGCCCATGAACACAAAAGGTAAGAAG
s HiC_scaffold_1 154206729 544 - 233722169 AGGGTTATGTGGTCCGGATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAGCAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGCGTTCTCAACTtggttattgtaaaaaaaggTGAGGTTTATGCTCTTCACGTTTAGTTTTTGTTGATGACTTACAGGTGTTTTTTCCTTTACGGTGTTTGCATATTAACCAGTGTATTTTACAAGTACCCTTGTAAATGATCATTTCAATGTTACAAAGGAAATTACTGAACTGAAATACTTCTGTTTACATTTGTCTCTTCTAAGGAGAGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGC-GCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGTAAAAGG

a score=9538
s chr3            70060216 278 + 160039680 AGGTAAGAAGCCCAGGACCAAAACACCCAACATTCATTGTCTTGTCACTCCATGAGTCCTGCAACACAAATGCCAACATGTTGTTCTGAATTTAAAAATGCGCTAAGAAAAACAAGAGGGAGGCTGCAGGAGATGCTAAACTTTGGATCAAGAGAAT-----TGAAGAAGACAAGGGGCAC-------------------------------------------------------------------------AGGAGGTT-----------CCGGGAACAGTTTGCCAACAAACT--GGCTGTCCTTAATTAGAGTTTCTACT------TCTGAGTCCAGTCAAAAATAAGTCTATGAGTAAGAAAGAAATGA
s HiC_scaffold_1 154208414 371 - 233722169 AGGTAAGAAACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAA-GAAGCAGCGtactaagaaaaacaaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGGTGAGTGAGATAAGGGAGGCCATGAAACCAGAATGGCTAATTTGCTGTTTTCACTGGAATAAAAGTCTGACTTCTTCTGTACTTCTGTTTTTTAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAGAAATAAA---ATGCTTAAGTAACAAATAA

a score=5798
s chr3           70228740 139 + 160039680 ACAGGGAGTGTTAGGATACTAATCATTCACATGTTTGCATATA-GAACACGGAATATATACAGAATGTCTTTCCTCTTTGCCACCTA-TGACACA--TATGGCACAGCAGTCATACCTGCAACCCCTCTAGGGGCAGGGTATA
s HiC_scaffold_1 39210484 143 - 233722169 ACTGGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAGTGTGCA

a score=4131
s chr3            70352492 123 + 160039680 AATACATGTGCAAGTCTCTTTCTTCCTGTGAGATTTGAAATAAATAAAGGAGTAACTTGACAAATTTTCAGATGATCCTGACAAATACACAGATACTTTCTGATATCTGACTCAGACTTTTGA
s HiC_scaffold_1 180518623 123 - 233722169 AACCCATGTTCATATGTCTCTATCTCTCAGCAACTTAAAGCAGATTCAGGTAGAACTAGGAAATTTTTCACATGATCCTGATAACTACACTGATGTTTTTAGAGGACTTACTCAGACCTATAA

a score=4254
s chr3            70352496 140 + 160039680 CATGTGCAAGTCTCTTTCTTCCTGTGAGATTTGAAATAAATAAAGGAGTAACTTGACAAATTTTCAGATGATCCTGACAAATACACAGATACTTTCTGATATCTGACTCAGACTTTTGAATTGACTTGGAAGGGTATTAT
s HiC_scaffold_1 139118343 138 - 233722169 CATTCATAAGTCTTTTTATCTCAGTGA--CTTAAACTAAATCAAGCTAGCAGTAGGAAAATTTTGAGATGACCCTGACAAGTACATCAATTTCTTTAGAGGATTTACTCAGACCTATAAGCTAAGTTGAAAAGATGTAAT

a score=21159
s chr3            70413264 610 + 160039680 TTCCTCCCTATTTCAGAGACAGCCTTATCTTTTCATACAGTGCCAAT----------AGTCACTGTGGTGAAGGTTGATATGAACAGATTTGGCCATATTGGGCACCTGGTTACCAGGGCTGACTTCTGCTCTGCAGTTGGCAAAGTGGAGATTGTTGCCATCAAGGACCCCTTCATTGACCTCAGCTACATGGTCTACATGTTCCAGTATGACTCTATCCATGGCAAGTTCAACGGCACGGTTCAGGCTGAGAATGAGAAATTCGTCATCAACAGGAAGCCCATCACCATCTTCCAGGAGTGAGATCTCGCTAACATCAAATGGGGTGATGCTGGTGCTGAATACATTGTGGAGTCTATGGGTATCTTCACCACCATGGAGAAAGCTGGGGCCAGCTTGAAGGGTGGGGCCAaaagggtcattaactccatcccttctgctaatacccccatgtttgtgatgggtgtgaacaataagaagaaatatgacaactcaCTCAAGATTCTCAGAAATGCATCCTGTGCCACCAACT--------------TTCAAGGTCATCCTTGACAATGTAAGCATTGTAAAAAGGCTCAT---------GCCATCACTGCCACTCAGAAGACTGTGAATGGCCCCTCTGGAa
s HiC_scaffold_1 135784274 612 - 233722169 tttcttctcattttacagacaGCAACATCCTTTCATG----GCCACCTATATACCTGAGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGGGTGCTTGGCTATCCAGTCTGCTTTCAG------GACAGGCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAG-------------TCCAGGAGTAAGAT-TTATCAGCATCAAAATGGGTGA-ACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGATACCTGT-TACTTGTGATGGGCCTGAACTACCAGAAG---TATGACTGCTATCTCAGGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAACCCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATCACCAGGTCATCCTTCTTATACAGAAGAC--TGGATGGCTCTTCTGGAA

a score=16955
s chr3            70413267 604 + 160039680 CTCCCTATTTCAGAGACAGCCTTATCTTTTCATACAGTGCCA----ATAG--TCACTGTGGTGAAGGTTGATA---TGAACAGATTTGGCCATATTGGGCACCTGGTTACCAGGGCTGACTTCTGCTCTGCAGTTGGCAAAGTGGAGATTGTTGCCATCAAGGACCCCTTCATTGACCTCAGCTACATGGTCTACATGTTCCAGTATGACTCTATCCATGGCAAGTTCAACGGCACGGTTCAGGCTGAGAATGAGAAATTCGTCATCAACAGGAAGCCCATCACCATCTTCCAGGAGTGAGATCTCGCTAACATCAAATGGGGTGATGCTGGTGCTGAATACATTGTGGAGTCTATGGGTATCTTCACCACCATGGAGAAAGCTGGGGCCAGCTTGAAGGGTGGGGCCAaaagggtcattaactccatcccttctgctaatacccccatgtttgtgatgggtgtgaacaataagaagaaatatgacaactcaCTCAAGATTCTCAGAAATGCATCCTGTGCCACCAACTTTCAAGGTCATCCTTGACAATGTAAGCATTGTAAAAAGGCT-------------CATGCCATCACTGCCACTCAGAAGACTGTGAATGGCCCCTCTG
s HiC_scaffold_1 224193781 585 - 233722169 CTTCTCATTTTGCAGACAGTCACACCTTTTCATGAAGTGCTATGCCATTGCATCATTGAGACAACAATGGGAAGACTGGAGTAATTTAACTGTAATGAGTGCCTAATCACCTTGGCTGACTTTAACTCCA------GCAAACTGGATATTATTCTCATCAGTGACCCCTTCATTGACCTCAACTACATGCTACACACATTCCACTATGATTCCATCCACA-CTCCTTCAATGGCACA-TCAAGGCTAAGAGCAAGAATCTTGTCAACAATGGAAAGCCCATCTCCATCTTCCAAAAGCAAGATTCCATCAACACCAAACTAAGTGATATTGGTGCTGAGATTTTTATAGAATCCATTGTTGTCTTCACTACCTTGGAGAAACTAAAGTATA---TAAATGTTGGAGC---------------------CCCTTCTCCTGAGA-ACCCATATTTATGAAGATTGTAATCCATGAGAAGTAAAATAATTACTTTACCTATACTACTAACAG------CTAACCCACCTAA--CCAAAGTCTTCCATGAAAACTTCGGCATTGCAGAGGAGCTCATGGTTTTAGTCCATGCTATTACTGCTATCCAGAAAAGTGTAGATGGTTCTTTTG

a score=10130
s chr3            70413336 446 + 160039680 AACAGATTTGGCCATATTGGGCACCTGGTTACCAGGGCTGACTTCTGCTCTGCAGTTGGCAAAGTGGAGATTGTTGCCATCAAGGACCCCTTCATTGACCTCAGCTAC-ATGGTCTACATGTTCCAGTATGACTCTATCCATGGCAAGTTCAACGGCACGGTTCAGGCTGAGAATGAGAAATTCGTCATCAACAGGAAGCCCATCACCATCTTCCAGGAGTGAGATCTCGCTAACATCAAATGGGGTGATGCTGGTGCTGAATACATTGTGGAGTCTATGGGTATCTTCACCACCATGGAGAAAGCTGGGGCCAGCTTGAAGGGTGGGGCCAaaagggtcattaactccatcccttctgctaatacccccatgtttgtgatgggtgtgaacaataagaagaaatatgacaactcaCTCAAGATTCTCAGAAATGCATCCTGTGCCAC
s HiC_scaffold_1 229906324 415 - 233722169 AATGAATTTGTCTGTATTGG--CTCCAGTTCCATAGGCTG-CTTTTG--------------AAGGGGATGTTGCAGCAGtcaatgtctctttccttgacttCA--TACTGTGGACTAGATGTTCAGAAATGATTCTGCCCATGGCAAGTTCAATGGCGCTGTCCAGGCGGACAAGAGGAAGTACA--GTCTGTAAGAATCCCAATTCCACTTTTCAGGAGCAAGATCCCTCCAGCATCAGAT--AGTGATGC-GATGTTGAACACATGCTGCAATCCGCTGTGCTCCTCATCATCTTAGCCATAGGCAGCACCCGCTTCGGAGGTGAAGCC-AAAGTATTATCATCCCTACCACTTGTGTCGATG-CCACATACTTGGAACAGGAGAGAACTATGAGA------ACGATGATTGCTTCGAGATTGTTggggctgggtatggtggcac

a score=6340
s chr3            70536610 409 + 160039680 TACAGTTGGTTGATGCATTATGACATT-TAGTCAAGGATGGCCA-CATATTTAATAGAGATGAAAATTTCTATTGTCAAATTATGTTATTATCACAACACAAAGTCTTTTGTTTGTGACG-------TGTTGCTGAAAGTCATGCTATTGTGCTAACAGCAATATAACAATGTAGCTCATATAATTATGTTTA--TAATTTGATAACTAGAAA---------------GGTTACATTCTTGCTACAT---TTTA---ATTATTCTTATTAGAGAATATTTTAAAGAAATC-----------TGAAAACTGTTACTATAAATCACTCTGTCATGTTATACCAATAACTTTCT-ATACATCTTATGCTTGCTGCTGCTCTTCATTGTGTCAAGTGTCTGCATCAATTGATTAACCTATACCAGAAAGATTTGTCCAAGTACACTGTGAGATGCTT
s HiC_scaffold_1 112185896 450 - 233722169 TATAGTTATGTGACACATAACAACATTCTGGTTAGTGATGGACAGCACACATGACAGTGGTCCCAGGTTGTAATCATTAATATAGCTGTCATCATAGTGCAATGCATTACTTATGTGTTGGTGGAATTGCTGGTATAAGCAAATGTGCTTTACTTCTAATCATAGGAAAATATAGCCCATACAATTACATATACTTGATCCAAATACAAGATACCAATGAAAAtgaatgaccatattactgatttatgtatttataccttatatgttttaatgtttattagaATGTAATCCTTCTACTTactaaaaaat---actataaaacaatATGCCACATTACTCCAGCATCAGCCTCATAAATCTTGTGTTTACTGTGTCTCTTGGTTGCATCAAAGGGCCATATCAAGTGATTGATGTATACTACACAGACTTGTGTAAGTGCACTGTATGATGTTT

a score=4273
s chr3           71046375 267 + 160039680 TGAAAAGTGATTGGGTCATACAGAAAATGACTTCTTCAATTTACTAATGCATCAGTGAGTTCAAAGATGAATGGATTACTCAGAAGTAAAGACTAGTGAGAAGTAGGCCAGCGGA------------------------------AGTctgcctttttgttctgct-------tgccacgaagtgaaccaaagttctgccataccatttttggagtgatgtactacattaacatagaggcaatgggttcaaatgaccagagactgagttctctgaaattgaatttccaaataaattattcatct
s HiC_scaffold_1 72225250 289 - 233722169 TAAAAGGTGATTGGACCATGAAGGCACCAAGTTCGTCAATGCATTAATACATTAATGAGCTTACAGCTGACTGGAGTATCCAGAAATAGGGTGCAGCTGGAGGAGGGTTACTGGACAACCCTTGAaggatatatttttccttttgactcttcctctgctttctgcttcctggctgtcatgaag---GATGTAGCTCT-CTCTTCTATCttt-----------ctgccataatgtttctgctttggagccagctatccatggactgaaacctctgaaactgtgagctaaaataaatcttcctcct

a score=5062
s chr3           71793402 232 + 160039680 CTTCTTGAGCAGATGCACATTTCTACAGTCTTACTGATGAACTC-AGTGCAGTCTTATCCTTGAAGATACTAAGCAGCTCACTGCCTCACTGTTCTTAGAGCACAACGCCACACACTTTCTGGATCAAAGACTACATGAATTTGGTGT--TTGCTGAAGTGCCCACTGCTCCAGCTCTACCTGGGTTTTTTTGACTTTTTCTCTCAGCCTGTGACTA-TGCTGCAACTCAGTGCCA
s HiC_scaffold_1 38226911 232 - 233722169 CCCCTGGAGCGGATGTGCGCCCC-ACCCTTTTCTCAATGAACTTGAGGGCCCACTTGTCCTTGGAGACCTTCAGCAGCTTGACAGCACGCCGCTCGTGGGGCCTGAAGCCGCACACCTCCTGGATCACGTCCCGCACGAACTTGGTGTGCTTGGTAAGGCG-CTGCAGCAGCAACTGTGCCTCGGTTTGCTC--CCGTTCTTCGTCACCTGTGGCTCTTGTTGAGGCCCACGGCCA

a score=30206
s chr3            71859123 1221 + 160039680 TCCTCCCTGTTCCAGAGACAGCTGCATCTTCTCATGAAGTGCCAGCTTTCTTTCTGTAGACATGTTGGTGAAGGGCAATGTGAATAGATTTGGCCATATTGGATGCCTGGATACCAGGGATGCTTGCTGCTCTGTCTCTGGTAAAATGGATATTATTGCCATGAATGATCCCTTCATTGATCTCAACTACATGGTCTACATGTTCCTGTATAACTCTCCCCATGGCAAGTTCAATGGCACAATCAAGGCTGAGAATTGGAAGCTTGTCATCAACTTGAAGCCTATCACCATCCTCCAGAAGTAAGATTCCACTAACACTAAATAGGGTGAGGTTGGTGCTAAGTATGCCCTGGAATCTACTGGTGT-TTCACCACCAGAGAGAAGGGTAGG-----------------------------------------CCATTATGCCAATGACCCCATGTTTGTGATGGTTGCAAACAATAAGAAATAATACAACTCATTAAAGATTGTTAGCAGTACCTCCTCCACCACCAACTGCTTAGCTTCCCTGGCCAAGGTCATCCCTGACAAC-TTGGCATCATGGAAGGGCAGATGACATAGTCTATGCCATCACTTCCATTCAGAAGTCTGTGAATGGTTCTTCTGGAAAGCTGTGGCATGACAGCCGTATGGCTGTCCAGAACATCAACCCTGCATCTACTGGTGTTGCCAAGACCATGGACAAGGTCATCCCAGAGGTGAATTGGAAGCTCACTGGCCTGGTCTACTAAGTTCCTACCCCCCAATGTATCTGTTGTGGATCTGACATGCAGCCTGGAGAAATCTGGAAAGTATGATGACATC-AAGAGTTTGTGGAGCAGGCAGGCAAGGACCCATTAAAGGGCATGGTGGGCTACAACTGAGGACCAGGTTGTCTCC--TATGACTT---CAGTAACTTCCACTCCTTCACCTTTGATGCTTAGGATGACATTGCTCTAAATTTCATGTTTGTAAAACTCATTTCCTGGTATAAAAATGAATATAGCTACAGCAACAGGATGGTAGACTTCATGTCCTATAAAACCTCTAGGGAGTAAGAAGTCCTGACCCATTCACCCCAGCAAACATGAGAGGAAGACAAAGGCCCTTTGAATGCTGAGGAG--TCCCTGTCCCAACTCGGCCCC---CTACACTGAGCATCTTCCTCACAGTA----TCCATCCCAGACCCTCATAACAACCAGAGTGTCCCAAGGAGTCCTAATATCTTTTAAAAAATCGATAAATTTTGCTGTACCA
s HiC_scaffold_1 135784275 1208 - 233722169 ttcttctcattttacagacaGCAACATCCTTTCATG----GCCACCTATATACCTG-AGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGGGTGCTTGGCTATCCAGTCTGCTTTCAGGACAG------GCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAG-------------TCCAGGAGTAAGATT-TATCAGCATCAAAATGGGTGA-ACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGAT-ACCTGTTACTTGTGATGGGCCTGAACTACCAGAAGTATGACTGCTATCTCAGGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAACCCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATC---ACCAGGTCATCCTTCTTATACAGAAGAC--TGGATGGCTCTTCTGGAAAACTGTAGCTTGATAGGCATGTGGCTGCCCAGATCAT--------CCTATGCTGATGCTGCCAAGTCTATGGTCTAGATCACCCCTG-GCTGGATGCCAAGACTACTAGCATATGCTTCTGTGGG-CTGCCTACTAGCTTGTCAGTTGTAGGTCTGACATGCTGTCTAGAGAAAGCTGCAGAATATGATGACATCTGTAAGGTGGTGAAACAGGCACTGGAGGGCCC-CTAAATGACAACCT-GGCTAca---gaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGATCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCAGCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAGTAGG----------CCACCAGCCTgagcaa----gaaatgaaaagagagggGCTTTAA--GCTGAGGAAGTGTCTTGCCCAAACTCAGCCCCACAACACTCTGAGACTCTCTCCTCCTGTGGGCTCCCATGCCAGACCTCCTGAAGAAGGGG--------AAAGATGCTTACTCTGTCATGTACCATCCGTAAAGTCCACTGTGCCA

a score=23704
s chr3            71859125 900 + 160039680 CTCCCTGTTCCAGAGACAGCTGCATCTTCTCATGAAGTGCCA-GC--TTTCTTTCTGTAGACATGTTGGTGAAGGGCAATGTGAATAGATTTGGCCATATTGGATGCCTGGATACCAGGGATGCTTGCTGCTCTGTCTCTGGTAAAATGGATATTATTGCCATGAATGATCCCTTCATTGATCTCAACTACATGGTCTACATGTTCCTGTATAACTCTCCCCATGGCAAGTTCAATGGCACAATCAAGGCTGAGAATTGGAAGCTTGTCATCAACTTGAAGCCTATCACCATCCTCCAGAAGTAAGATTCCACTAACACTAAATAGGGTGAGGTTGGTGCTAAGTATGCCCTGGAATCTACTGGTGT-TTCACCACCAGAGAGAAG-----------------GGTAGGCCATTATGCCAATGACCCCATGTTTGTGATGGTTGCAAACAATAAGAAATAATACAACTCATTAAAGATTGTTAGCAGTACCTCCTCCACCACCAACTGCTTAGCTTCCCTGGCCAAGGTCATCCCTGACAACTT-GGCATCATGGAAGGGCAGATGA-CATAGTCTATGCCATCACTTCCATTCAGAAGTCTGTGAATGGTTCTTCTG-GAAAGCTGTGGCATGACAGCCGTATGGCTGTCCAGAACATCAACCCTGCATCTACTGGTGT-TGCCAAGACCATGGACAAGGTCATCCCAGAGGTGAATTGGAAGCTCACTGG-CCTGGTCTACTAAGTTCCTACCCCCCAATGTATCTGTTGTGGATCTGACATGCAG--------CCTGGAGAAATCTGGAAAGTATGATGACATCAAGAGTTTGTGGAGCAGGCAGGCAAGGACCCATTAAAGGGCATGGTGGG-------CTACAACTGAGGACCAGGTTGTCTCCTATGACTT---CAGTAACTTCCACTCCTTCACCTT
s HiC_scaffold_1 224193781 906 - 233722169 CTTCTCATTTTGCAGACAGTCACACCTTTTCATGAAGTGCTATGCCATTGCATCATTGAGACA-----ACAATGGGAAGACTGGAGTAATTTAACTGTAATGAGTGCCTAATCACCTTGGCTG------ACTTTAACTCCAGCAAACTGGATATTATTCTCATCAGTGACCCCTTCATTGACCTCAACTACATGCTACACACATTCCACTATGATTCCATCCACA-CTCCTTCAATGGCACA-TCAAGGCTAAGAGCAAGAATCTTGTCAACAATGGAAAGCCCATCTCCATCTTCCAAAAGCAAGATTCCATCAACACCAAACTAAGTGATATTGGTGCTGAGATTTTTATAGAATCCATTGTTGTCTTCACTACCTTGGAGAAACTAAAGTATATAAATGTTGGAGCCCCTTCTCCTGA-GAACCCATATTTATGAAGATTGTAATCCATGAGAAGTAAAATAATTACTTTA------------------CCTATACTACTAACAGC-TAACCCACCTAACCAAAGTCTTCCATGAAAACTTCGGCATTGCAGAGGAGCTCATGGTTTTAGTCCATGCTATTACTGCTATCCAGAAAAGTGTAGATGGTTCTTTTGTGAAAAGTATGCCATCATGGCCTTGGGGCTGCCCAGAAGAGCATCCTTCTAATTACAGCCATATACTGTCACTGTAAGCAATGTCATTCC-TACAAGAGTGAGAAGCAGTCTGGAACTAACGTTCTGGGTTTCTA-CTCCCAATATATCAGTCATAGATCTGATCTGGAGAAAGATCTCCTGGAGAAAGCAGCTAAATATGATGACCTTAAGA--TGGTGAACCAGGGCTCAAAGGAATCCTTAAA-AGCATCTTGAAAAAGATTCTTTCACTAAGGACCAGGTTGATTCCTGTGACTTTAACAGTGGTATATGCTCTTCctcttt

a score=6120
s chr3            71859205 280 + 160039680 AATAGATTTGGCCATATTGGATGCCTGGATACCAGGGATGCTTGCTGCTCTGTCTCTGGTAAAATGGATATTATTGCCATGAATGATCCCTTCATTGATCTCAACTAC-ATGGTCTACATGTTCCTGTATAACTCTCCCCATGGCAAGTTCAATGGCACAATCAAGGCTGAGAATTGGAAGCTTGTCATCAACTTGAAGCCTATCACCATCCTCCAGAAGTAAGATTCCACTAACACTAAATAGGGTGAGGTTGGTGCTAAGTATGCCCTGGAATCTACTG
s HiC_scaffold_1 229906324 257 - 233722169 AATGAATTTGTCTGTATTGGCTCC---AGTTCCATAG------GCTGCTTT--------TGAAGGGGATGTTGCAGCAGtcaatgtctctttccttgacttCA--TACTGTGGACTAGATGTTCAGAAATGATTCTGCCCATGGCAAGTTCAATGGCGCTGTCCAGGCGGACAAGAGGAAG--TACAGTCTGTAAGAATCCCAATTCCACTTTTCAGGAGCAAGATCCCTCCAGCATCAGATA--GTGATG-CGATGTTGAACACATGCTGCAATCCGCTG

a score=10623
s chr3            71894755 261 + 160039680 gtgaataaagaaaatatctaataaaaaaTGCACTAAAAAA---GAATCTCCAGCAGCA--GCCTTCTTCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGGAAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTA-AAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTC-AAAAGGAATGCCCCATATGTGTTACTACGGCTAAACT
s HiC_scaffold_1 217546850 268 - 233722169 GTGggtaaacaaattttaaaataatataagatttgAAAGACTAGACTTTCAGTCAGAACTGTCATCTTCCAGTAATTTGCCAAAATGATGAACATGAAGGGAACGGGGAGGGGAACCCAGTATATGTTCTTTAGGCTTTTTAGAAAACATGGGGTTGTTCCTTTGGCCAAACACATGAGAATCTACAAAAAACAGTGATATCATAGACATCAAGGGAAAGGGTAATGTGCAAAAAGGAATGCCACACAAATGGTACCACGGCAAAACT

a score=9932
s chr3            71894796 246 + 160039680 AATCTCCAGC---AGCAGCCTTCTTCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGGAAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTAAAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTC-AAAAGGAATGCCCCATATGTGTTACTACGGCTAAACTA-------TTTTC---TTTATGATATGCTGCTGATA
s HiC_scaffold_1 152995901 259 - 233722169 AACTTTCAGCCAGAACTGCCATCTTCCAATAATTTGCCAAAATGATGAACATGAAGGGACAGAGGAGGGGAACCTGATATATGTTCTCTAGGCCTTTTAGAAAACATAGGATTGTTTCT-TGGCTACATACATGTGAATCTACAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTGTGCAAAAAGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACTATATGCTGTTGATA

a score=6758
s chr3            71894802 194 + 160039680 CAGCAGCAGCCTTCTTCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGGAAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTAAAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTCA-AAAGGAATGCCCCATA
s HiC_scaffold_1 133881147 186 - 233722169 CAAAAACTGTCATCTTT--GTAATTTGCTGAATTGATCAGTGTAAAGGGAAAAATGAGAGGATCCCAATGTATGTTCTCTAGGCCTTTTAGAAAACATTGAGTT-------TGGCCACATACATGTGAACCCATATAAAGAGTTATATTGCAGACGTCAGGGCAGTGGATACTGTTAACAAAGGAATGCCATACA

a score=8618
s chr3           71894814 201 + 160039680 TCTTCCAGTAACTCACCAAAATGACCAAAACAGAGAGAACAAGGAGAGGGACTCGGTGGATGCTCTCTACGCCTTTTTGGAAACATGGAGTTGTTCCTGTGGTCACATACATGTGGATCTAAAAGAACAGCGATCTTGTAGACATGAAGAAAATGGGCACTCTTC-AAAAGGAATGCCCCATATGTGTTACTACGGCTAAAC
s HiC_scaffold_1 55447205 202 - 233722169 TCTTCCAGTAATTTGCCAAAATGATGAACACAAAGGTAAAGAGGTGGGGATCCCAATATATATTCCCTATGTCTTTCAGAAAACATGGGGTTGCTCCATTGGccacatacatacaaatatacaaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGGAATGCCACACAAATGTTATCATGGCAAAAC

a score=4446
s chr3            71941195 136 + 160039680 ATGCTCCAAGTTTCTGAACTTGAAGGTAACTTGTTTAAAAACTATCCCTCTATGCTGTCTATTAGTAAAAATTTGAAGAGTCAGAAAAAGTATCAGCTTGTCTTAGATCTGTCAGAAGT---GTCTGAGGAACAAGCAG
s HiC_scaffold_1 170080168 139 - 233722169 ATTCTTCAGGTTTCTAGCCTCGTATGTGAGGAGCTTGAAAGTTGCCACTCTATCTTAACTACAAGTAAAAAGTTGAACAAACTAAATAATTAACAGCCTTTCTTAGATCTGCCAGCTATGAGGTCACAGGAAAAACCAG

a score=5997
s chr3            71956463 213 + 160039680 TTTTGCTTCCATGGAGGTCATTTCTATCAAGATGAACTTAAATGTCTCTTTC-CCAACCATTAGCTATAaaacaaacaaacaaacaaacaaacTCATTAAAGTAAATATGAAGAAAACTTCTTATTTTCTAGGAGAAGTAATGGGCATAGAAGTAGCTGTTGATGATTTGGGTGAAGAATAGAAGACTTATATGGTTTGAATCAGCAGTGGAAA
s HiC_scaffold_1 107649355 197 - 233722169 ttgtgaCTTCACAGTTATCAACTGCTTCAAGATGATGCTGAATATCTTTTTCTCCAACTACTGGCTAAAAGA-----------------AAACTCATTGCAATGAATAATGAACACAAATCTTATATTTTATAAGAAGTGTATGACACAGAAGTCACTGCTCACACTCTGAGTAAAGAATATAAAGCATATTTGTTCTAAATCTGTAGTGGAAA

a score=4782
s chr3           72335394 147 + 160039680 GAACAGCTGGGTCATGAGGGCTCTGATCTCATCAATGGATTAATCCAATGGTAGATTTATAATTC-ATGAGCTTT----AGATGAAGGAACAAAATGTAGCAAATAAGATCTCTTTCAAGGCACTGTGTTCCTGAGGGCACATCATTATGGA
s HiC_scaffold_1 51901493 152 - 233722169 GAGTGATTGCATCATGAGGGCTTTGACCCCATCGATGGATTAATCTATTGATGGGTTTACAATTTGATGGGCTATTGGGAGATGATGGAAATTTAGGAGGCGGGTGGGATCTAGTTGAATGAAGTGAGTCTTTGAGGGTATGCCCATGGGGA

a score=3907
s chr3           72444292 278 + 160039680 CTGATTGTTTATGCTGTCATTTAAAATGATCTATGTATTCAACTTGCAAAGCCAGA----TAAAAACATCTT-----GAAACCAAGAAGCAA--------------GGCATCCTGAAAT---ATGGACA-CTTGCCACCCTTAGAGACT--GCTCTTGTTGAAGCACTGACCATGTATCATTCACTATGTTTTATGAAATCCCAGTCATAGTATACATTTCCTGCTTAATTCTGTGTATAAACATGGAAATCACTTATGGGGTCATTCTCTTGAAGCTAATAATTCAAGGTTGATAAATCAATATTT
s HiC_scaffold_1 71790917 288 - 233722169 CTGAGTCTTCAGTCTGTCACACAGCATGATCTGTGT-TTCTTCTGAGACAATCAGGGATTTAAAAGCTTcttttgcaaaaaacaaaaaacagtgattCTTCACTTGGGCCTACTGAGGGCCAATGGATAACTTATCAAGCTTGACATCTTTGCCTTCATT------TTGCATCTGTATcctttattacctt----aaaacttAAGGC--------CAAATCCTGCTCAGCTCTGCCTATAGACATGTAAATCTTCTAAGGAGTGTCTGTCTAAAAACTGGTAATACAAGGTTGATTAACCACAGTTT

a score=4968
s chr3            73401562 213 + 160039680 CAGATCTGGAATAAACCTGGACTTGGGGCACCCTCTGTTGATGAAACAGTGACAACACATTAAGCCAAGGCTTCTGAGAAATCT---CCATGAAAGTCATCTCACACTAAAACTCCAGCCGTGGTCACAAGGCTAGGAACAAGAAGCTTTGTTAGAATTTCTGAAAGAAAGGACAGAAAGTGATATTTGAAAGTTCTGAATCACTAACAAAACCTT
s HiC_scaffold_1 146679216 212 - 233722169 CAGATTTGGAGCAAATCCAGGTTTTGGGTGCTTTCTAGCACTGACACAGTGACAACACACCAAAAGAAGGCTTATGGCAAACCTGGACCTATAATTCCAGTTAGTGTTAAAATACCA---GTGTCCACAGGTTTAGAATAAATAGACTGTTTT-GAATTTCTTGAAGGCCAGGCATATAGCTAGATTACAGAGTTTGGAAAAATTATCTAATCTTT

a score=48180
s chr3           73477119 793 + 160039680 tttataatataaaCAAACA-TGTCCACATTGTTTATTTCTCACAGTTCTTCTGATAAATGAACATTATTTAAGAACATACTCTATACACAGATAAGAA---ACATACAAAATGTTTTAAATGATGCACAACAAAATCCAGCAGTATAAAAGAAT---TGTGAAGTCTTGCTCACT----------------------------------------CATACAATCTTTTATGTATTTTGGGCAGACTACAAAAGAGGGAAAATTATCACCATATATATGATTTTTATATTAGGCAGTTTTCTTTGACATGCTGTACTGAAAACTCCA--CACAGAGGCAGAAGGCTATGTACTTTAAAAGGAAT--TAGTGGTGTGAGTCAGA--CTTTACA--GTTACTACCACTGGCAATTCTCAACATAGTCTGTACACATCACATGATCATCTCATATAACATGACATT--AAAAATATATCTGCATGACAACTTCATGACATTCACACCCCATGAGCCGCTTACAGAAGCAAAGCCACAGCTAGGTCTTG-----CTTTGCTCTTGGTAA---GGACAGGTCATCGTGATTAAAAG---TTAGGTATCAA-ACCATTAAGCAGCTCCAGTCTACTACAGGCCATCAGTGACCACCAGACAGTGAGTTCTTTTAGAGTACACATCCTAGAAGCAAACACCATCATTGGTTAAAACTTTGTCT--ATAAGCCTGTTTCTGAGCTGAAAGCTATCTACACAAAACTGAAAGCTACGAAACTGATTTAATATAAATACTTTGTCTTTCATTATCATATTTATGACTGAGGTCTTTAAAACCTTTGGAATTGACTCTGGAGATAATATATGCTCT
s HiC_scaffold_1 94444693 860 - 233722169 TCTATAATATAAACAGACAGTATCCACatagtttatttctcacagttctccTGACAAAGGAACATTATTCAAGAACATACTGTATACACAGATAAGAAGAAacatacaaaatgttttaaatgatgcACAACAAAATCCAGCAGTATAAAAGAATGCATGTGAACTCTTGCTCACTGTGCAGACTAAATTTAATCACTTGtttaaatagtaataaaaatacaatctttTATGGATCTTGTTCAGACTACAAAAGAGGGAAA-TTATTaccatatatatgatttttatattagGCAGTTTTCTTTGATGAGTTGCACGGACAACTCCAAATACAGAGGCAGAAGTCTGtgtattttaaaggaattaaTAATGTTGTGAATTAGAGACTTTACACAGTTACTACCACTGGCACTTTTCACCATAGTTTGTACacatcacatgatcatcttatataacattacatttaaaaaatatatctgaGTGACGATTTTATAACATTCACACACCATGAGCTGGTTA-AGAAGCAATGCCACAGTTGCCTCCTGTAGTGCTTTGCTGTTGACAACAAGGACAGTTCATTGTGGTTAAAAGAAATTAGGTATCGATATGGTTAAGCAGCTCCAATTTACTAAAGGCCGTCAATGACCACTGGACAGTGAGTTCTTTTAGAGTATAGATCCTAGAAGCAAACACCATCATTGGTTAAAACTTTGTCTAAAGAAGTCAGTTTCTGTGCTGAAAACTATTTTCACAAAACTGAAAGCTACTAAAGTGTTTGAATATAAATACTTTGTCTT--GTTTCCATAGTTATGACCAAGTTCTCTGAAACCTTTGGGATTTACTCTCACATGAATGTGTGCTCT

a score=11311
s chr3            73477694 224 + 160039680 CCACCAGACAGTGAGTTCTTTTAGAGTACACATCCTAGAAGCAAACACCATCATTGGTTAAAACTTTGTCTA--TAAGCCTGTTTCTGAGCTGAAAGCTATCTACACAAAACTGAAAGCTACGAAACTGATTTAATATAAATACTTTGTCTTTCA-TTATCATATTTATGACTGAGGTCTTTAAAACCTTTGGAATTGACTCTGGAGATAATATATGCTCTTAATCC
s HiC_scaffold_1 179076671 222 - 233722169 CCACTGGACAGTGAGTTCTTTCATAG-----ATTCCAGAAGCAAACATCATCATTGGTTAAAACTTTGTCTAAAGAAGTCAGTTTACGTGCTGAAAACTATTTTCACAAAACTGAAAGCTACTAAAGTGTTTGAATAGAAATACTTTGTCTTCTAGTTTCCACAGATGTGACCAAGTTCCCTGAAACCTATGGTATTAACTCGTGGGTCAATGTGTGCTCTCATTTC

a score=4470
s chr3            73729623 155 + 160039680 GATGAACAGGAACC-CTGCC--TCTTGCCACTCTCGCTTAGTCTCAGAGCATTGCAGCTGTGCTTAGCAACAGAATGCCAGATGGCACGGAGACATCAATTGATTATTGCTCAAGAACAATGTCACCT-----ACCAGAGTGAACTACAGACAAATTGACAAA
s HiC_scaffold_1 164622283 158 - 233722169 GATGAATAGAACTCACTGCCCTTTTTTCCAGTCATACTT-----TATAGCACTGTGGCTGTGCTTCACCAGAGAAGGCCAGATGTCAGAGATACAGCAGTTGTTTACTACTCAAAAGCAATGCCATTTCTAGCATGAGAATACACAAGAGACCCATCAATCAA

a score=61922
s chr3           73932987 1506 + 160039680 ATAGAAAAATAAACTCATTGAGGAATGGATAAAGAAAGTTTCCTGA---TACAGAACTAGAGCTGGAAGAGACAAGTCCTGTCTCAAAATGGAG------------------GATCATGATCCAAA----------------GGAAGCAGAGCAGCTAAGGAAGCTGTTTACTGCTGATCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACAGTTTGAGAAATGGGGTACACTTCCAGACTGTGTGGTAATGATAGATCCCCAAAGAAAACATTCCAAGGGCTTTATTTTTGTGACCTACTCTTGTGTTGAAGTGGTGGATGCTGTAATGTGTGCTCGGCCTCACAAGGTTGATGGGCATGTGGTGGAACCAAAAAGAGCTGGTTCTAGAGAGGATTCTGTAAAGCCTGATGTCCATTTAATGTTGAAGAAAATATTTGTTGGATGTATTAAAGAGAAT-CAGAAGAATATAATCTGAGAGACTACTTTTAAAAGTATGGCAAAATTGAAATCATAGAAGTTATGGAAGCCAGGTAGAGTGGAAAAAAGAGAGGAGTTGCTTTTTTAACTTTGGATGATCATGACA--AGTTCAAAAGTTTGTTATTCAGAAATACCACACTATTAATGGGGATAATTGT-GAAATGAAAAGGGCCTTTTGT-AATAAGAGATACAGTCTCCTGGATCACAGAAAGGTCATGGATGTGGATCTGACAACTTTATGGGTCATAGAGGATACTTTGGATATGGTGGAGGAAACTTTGG---TGGACAAGGAGGCTAt----ggtggtggaggtggtggcagcagaggtagttatggaggtgatgatggtggataaaatggatttggaggtgatggtagcaactatcgtggtggtcctggttaaagtagtagagaagattatggaggtggtggaaaaggatatggaaaccaaagtggtggatatggtggtggtgAAGGAGGG--tatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtgggaactacaatcactttggaaattatagtggagagcaacaatcaaattatggacccatataggagggcagttttggtagaagaagctcaggcagtccctatggtggtggctatggatctggagatgaatgtggtagaattggtagcagaaggttctaacataaaacagaaatgg-ctacagttcttagta----ggagagagtgaggagttttcaggaaaactgcagtaaactttgagacagtaatcacaaatgcattggaggaactgtaaaaatctgccagagaaagaaccataatccacagtcagaaaagttactgcagcttaaaccggaaacccttcttgttcaggactgtcatagccacagtttccaaaaagtgcagctattgattaatgtgatgttgtgtcaattagatgtacatttctaaggtcttttatctgttgtagctttttctttttctttttataacatcagata---tattgtaaattgtggcagtggtaccagaagtaaa-aaattaaggaatttttaactt
s HiC_scaffold_1 69607444 1455 - 233722169 ATACAGAAATTAACTCA-----AAATCGATCAGAAA-----CCTAAATGTACGAATCTA-AGTTACAAGA----AGTCTAGTCTCAAAATGGAGTTAAAACTGTTCTACTCTGATTCTGGCCCTCGTCACCCCCGCCAGGCTGAAGCCAGAGCAACTGAGGAAGATGTACATCAGTGGTCTGAGCTTTGAAACTACACAT-------TAAGAGAATATTTTG-GAAACTGGGCACACTCACAAATCATGGGATAATGagagatcctcaa-taaaatgctcCAGGGACTTTGGTTTTGTGACTTACTCTTGTGTTAAAGAGATGGATGCTGCAAAGTACACTCGATCACACAAAGGTGAAGGGCGTGGAGTTGTACCAAAGGGAACTGTTTCTAGAAAGGATTCAGTAAAGCCTGGTACCCATCTAACT--------GATTATTGTTGGCAGTATTAAAGAAGATACAGAAGAATTCAATTTGAGAGACTACTTTGAAAAGTATAGC--AATGGAAACCATAGAAGTTATGGGAGATGGGCAGAGGGGAAAAAC---AGGATTTGCTTTTGTAACTTTTGATGGCCATGATAATAGTTGATAAAATTGTTATTCAGAAATACCACACTATTAATCCACACAATTGTGGAAGTGAAAAAAGCCTTTCCTAAACAAGAGGTGCTGTCTGCTGGATCAT-GAGAGGTTATGGAGGTGGATCTGGCAACTTTATGGATTGTGGAAGAAATTCTGGAGGTGATGGAAGGAATTTCAGCCATGATGGAAGAGACCATGATGGGTGGTACAGGAGATGAAAACAGAGGTAGTTATGGAAGAGGTGATGGTGAATATA----------AGGTGATGGTGGAAGCTATGGTGGAAGCCCTGGTC----------------------------------AGGATATGGAAACCAAAGTGTTGGATACGGTAGTAGAGGAAGAAGACCTACAATGGTTCCAATAAATGG------TTATGTTGTGGTAGCTATGGAGGTGTTGAGAACTATAATGATTTTGGAAATTACAGTGGACAACAGCAAACAGATTACAAACAGAT------------------TGCAAGAAGCTCTGGCACTCCA-GTAGTGGTGGTTATGGATCTGATGGTAGAAGTGATGAGTTTGGCAGCAGAGGGTTTTAAAAACcaacagaaaaggacaatagTTCTTAGCAACAGAGAGACAGCAAGGAGTCGTTAGGAAAGCTGCAGGTTACTCTGAGACAGTCATCCCAGATGCATCCGAGGAACCGTAAAAATCTGCCACAGAAAGAATGATGATCCATGGTTGGAAAAGTTACTACAGC-TAAGTAGGAAACCC-TCTAGTTCAGCACTGTGACAGTCACAGTCTGCAAAAAGTGCAGCTACTGATTAACGCAAGGCAGTGTCAATTAGATGTACAATCCCGAG--CTTTTAGCTTTTGTagctttgtctttttctgttcatTGCCCTAGATACTGCCCTGTAAATTGTGGTAGTAGGACCAGGAATGAATAAATTAAgagatttttaactt

a score=20261
s chr3            73933063 1013 + 160039680 TGTCTCAAAATGGAGGATCATGATCCAAAGGAAGCAGAGCAGCTAAGGAAGCTGTTTACTGCTGATCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACAGTTTGAGAAATGGGGTACACTTCCAGACTGTGTGGTAATGATAGATCCCCAAAGAAAACATTCCAAGGGCTTTATTTTTGTGACCTACTCTTGTGTTGAAGTGGTGGATGCTGTAATGTGTGCTCGGCCTCACAAGGTTGATGGGCATGTGGTGGAACCAAAAAGAGCTGGTTCTAGAGAGGATTCTGTAAAGCCTGATGTCCATTTAATGTTGAAGAAAATATTTGTTGGATGTATTAAAGAGAAT-CAGAAGAATATAATCTGAGAGACTACTTTTAAAAGTATGGCAAAATTGAAATCATAGAAGTTATGGAAGCCAGGTAGAGTGGAAAAAAGAGAGGAGTTGCTTTTTTAACTTTGGATGATCATGA-CAAGTTCAAAAGTTTGTTATTCAGAAATACCACACTATTAATGGGGATAATTGTGAAATGAAAAGGGCCTTTTGTAATAAGAGATACAGTCTCCTGGATCACAGAAAGGTCATGGATGTGGATCTGACAACTTTAT-GGGTCATAGAGGATACTTTGGATATGGTGGAGGAAACTTTGGTGGACAAGGAGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtgatgatggtggataaaatggatttggaggtgatggtagcaactatcgtggtggtcctggttaaagtagtagagaagattatggaggtggtggaaaaggatatggaaaccaaagtggtggatatggtggtggtgAAGGAGGGtatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtgggaactacaatcactttggaaattatagtggagagcaacaatcaaattatggacccatataggagggcagttttggtagaagaagctcaggcagtccctatggtggtgg
s HiC_scaffold_1 210325313  840 - 233722169 TGTTTCTAAACCGGGGTC-----TCTTAAGGAGTCTGAATAGCTGCAGAAGCTCTGCATTGGAGGGCTGAGCTTTGACAAAACCAGGAAGAGGCTGAGAAGCCATTCTGAGAAGTGAGGAACACTTGCAGATTGAGTGGCCACGAGAGACCCAAACACAAAGGGCTGCAGGGCCTCCAGGTTTGTAACTTATGCCAGCATGGAGGAGGTAGACACAGCCTTGAAAGCAAGGCTGCACAAAGTGGATGGAACAGTTATGGAACTAAAGTGAGCTATCTCAAGAGAAGATTCTCAAAGTCCAGGAGCCCATTTAACTGTGAAG---ATCTTTGTGGATGGCATTAAAGAAGACACTGAAGAACATCACCTATGAGATTATTTTGAACAGTATGGAGAAATTGAC----------TGACCGAGGC-------AGTGAAAAGAAGAGGGGCTTTGCTTTTGTAACTTTTGATGACCACGATTGTGTGGATAAGATTGTAATTCAGAAATACCATACTGTGAACAACCACAACTGTGAAGTAAGGAAGCTCT---------------------------ATCAAAGCAGGGT-ATGGTTAGTG---------CTTCATCTGGCCAAAGAGG------TCCAAGTGGCTCTGGAAATTTTGGTGG------------TGGTCATGGAGGTGGT---------------------------------------------TTTGGTGGCAATGACA---------------GTTTTGGTT------GCAGAGGAAACT---TAAGTGATCAAGATGATTTTGGAGGCCA---------ACATGGCAGCAGTGGA---------GATGGCTACAGTGGATTTGGTAA---TGGTGGAAGCAATTATGGAGGTGGTGGAAGCTACAATGATTTTGGCAGTTATAAC---AATCAGTCTTCAAATTTTGGACCCGTGAAGGGAGGAAAGTCTGGAAGCAGAAGCTC---TAGGCTCTATGGTGGTAG

a score=15915
s chr3            73933086 990 + 160039680 TCCAAAGGAAGC---AGAGCAGCTAAGGAAGCTGTTTACTGCTGATCTGAGCTTTGAAACCACAGATGATAGCTTAAGAGAACAGTTTGAGAAATGGGGTACACTTCCAGACTGTGTGGTAATGATAGATCCCCAAAGAAAACATTCCAAGGGCTTTATTTTTGTGACCTACTCTTGTGTTGAAGTGGTGGATGCTGTAATGTGTGCTCGGCCTCACAAGGTTGATGGGCATGTGGTGGAACCAAAAAGAGCTGGTTCTAGAGAGGATTCTGTAAAGCCTGATGTCCATTTAATGTTGAAGAAAATATTTGTTGGATGTATTAAAGAGAATCAGAAGAATATAATCTGAGAGACTACTTTTAAAAGTATGGCAAAATTGAAATCATAGAAGTTATGGAAGCCAGGTAGAGTGGAAAAAAGAGAGGAGTTGCTTTTTTAACTTTGGATGATCATGACAAGTTC-----AAAAGTTTGTTATTCAGAAATACCACACTATTAATGGGGATAATTGTGAAATGAAAAGGGCCTTTTGTAATAAGAGATACAGTCTCCTGGATCACAGAAAGGTCATGGATGTGGATCTGACAACTTTAT-GGGTCATAGAGGATACTTTGGATATGGTGGAGGAAACTTTGGTGGACAAGGAGGCTAtggtggtggaggtggtggcagcagaggtagttatggaggtgatgatggtggataaaatggatttggaggtgatggtagcaactatcgtggtggtcctggttaaagtagtagagaagattatggaggtggtggaaaaggatatggaaaccaaagtggtggatatggtggtggtgAAGGAGGGtatgatggttacaatgaaggaggaaattttggtggaggtaactatggtggtggtgggaactacaatcactttggaaattatagtggagagcaacaatcaaattatggacccatataggagggcagttttggtagaagaagctcaggcagtccctatggtggtgg
s HiC_scaffold_1 212566174 814 - 233722169 TCCCAAGGAGACTGAAGAGCAGCGCTGCAAGCTCTTCATCAGAGGGCTGAGCC-----ACCACC-----TAGTCTCAGGAGCCACTTTGAGCAGTGGGGAACACTCACCGACTGTATGGTAATGAGAAATCCGAACACCAAGCGCTCCAGGGGCTTTGGGTTCGTCACTTATGCCAGCgtggaggaggtggaggcagcCATGAAGGCCAGGCCACACCAGGTAGATGGCAGAGTGGTGCTAACCAAGAGAGCTGTATCCAGGGAAGACTCCCAAAGACCGGGTGCCTACCTCACTGTGAAG---ATCTTTGTCGGTGGCATTAAAGATA--CTGATGAACATCACCTACGAGATCATTTTGAACAATATAGAGAAATCGAAGTTATTGAAATCATGACTGACCGAAACACTGGAAAGAAAAGGGGCTTCGCTTTTGTAACCTTTGTTGACTATGA----TTCTGCAGACAAGGCTGTGATTCACAGATACCAGACTGTCAA-GGCTACAGGTGTGAGGTGAATAAAGCCCTGTCCAGGCAGA--------------------AGATGGCTAATG----------------CTTCATCTAGCCAAAGAGG------TCCACATGGTGCTGGAAATTTTGGTGG------------TGGTCGTCGAGGTGGT---------------------------------------------TTTGGTGGCTATGGCA------ATTGTGGTCG------------------------------------------AGGA---GGAAACTTCAATGTTCCACGTGGCTTTGGTGGCACTGGGAATCA---GTACACTGAAATTGGTAA------TGGAAGCAATTTTCAAGTGGGCGGAAGCTACATTGATTTTGGCAATTACCAT---AATCAGTGTTTACATTATGGGCCCATGAAAGGAGGAAAGTCTGGAGGCAGAAGCTCTG---GGCTATATGGGGGTGG

a score=16897
s chr3            74323502 524 + 160039680 CTTTATTTCTTTTGTACATTAGGTCATGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCT-----CCCTTTTTCTTCCTTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGAATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGAGACGATGCAT
s HiC_scaffold_1 214914751 507 - 233722169 ctctttttttttcatctactATGCTGTGGGTTCATAGGGAATAGATTTAGGTATTTCAGGCTTCTTTCCATCAATTCTGACAACATGTGCTTCACTGAGCAGATCAGACTGGTGCATCTGTTGAACCCAGGTAAGTTCCTCTTGGattttctaccttttattttaattttgctttatgtGTTTCAAGTAACTATTTTGACTCCT--AGTGCTTCACATGATAAATATACACATTTAGTCACCTGGCAAATATCTTGCCCTTAATCTGATGGTTTACAACAATG----------------TGCTGCTATAGAGGCTTCCAGTTTTGC-ACATTAATATTTATAGGgactttctttttgaacagtatCTATTCCCTTAATCTCTAAATTATCGCCTTTCTTGTAGATTCACATATATGTGAACAGAGGAAAAACCTCATATTTCCTAAAAGGCTTAGAAGACACAATCAATAGCTCTCTTTACCCTCTTCATGTGTGTCATTTTGGCAGGTTACCA---GAGATGATGGAT

a score=25486
s chr3            74323520 527 + 160039680 TTAGGTCATGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTG----GGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTCC-----TTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTT-CCTAAAAGGCCTAG--AGAATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGA-GACGATGCATGCCTCATTGTTTTTTTTTTTT
s HiC_scaffold_1 215432005 536 - 233722169 ttaTGCTGTGAATTTATAGTGAATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAG-AACCAATCCCTTGATGTCTACGATATCACTCTT--TGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAAAGGTTGTTTCCTCTT

a score=16344
s chr3            74323524 481 + 160039680 GTCATGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTCCTTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAA---------------------------------------------------------------------------------------------------------------------------------------------------------TATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGAATATA--CCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAG
s HiC_scaffold_1 181453998 615 - 233722169 gccctgATTTCTTG-GGAGTGCAGTCCAGCAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAGGGCGGGCTGGTGCTTTAGTTGAACCCAGGCTTCCTTCTTTTT----------CAGATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGCAAGTGTCTTACCCTTTACTTGCTTGTTTCCAGCTGTGCCAGCGGCATGCTGGGTAACACTGGACACTCTTCCTGTTTTGCCATGGTGACATTTGTGTGACATTCTTTTTTGCACAG-------TCCCTTGATGTCTACAAAATCACTCTTTttggtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtggtaccaggaatcgaactcacgacctcaagcttgccaggcaggcgcttgtgctgctgagctaaactgcTGTCACCCTGTTTGTAGAATTGCATGTCTGTGGCCAAGGGGACAAC-CCATGATT--TAAAAGGCCTAGAGAACACACGCCAGGTTCCCCTCCTCTTTGCCTTTGTGTTCATCATTTTGGCAAG

a score=25278
s chr3            74323524 492 + 160039680 GTCATGAATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCTTC-----CTTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCCTGTAGATTCTCATGTATGTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGA--ATATACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGA
s HiC_scaffold_1 172799160 498 - 233722169 GCCATAAATTCAAAGGGAATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGT-TCACAAAGCTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTACCCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctttccctttgtcTTCATCATTTTGGCAAATTACTGGAAGA

a score=24105
s chr3           74323530 498 + 160039680 AATTCATATGGAATGGTCTCCAACATCTCAGGCACGTTTCTATTAGTCCTCACAAAGTCTGCTTCTCTGGGTGGCGCAGGCTGGTACTTCAGCTGAACCCAGTTGTCCTTCTCTTTGGCTCCCTTTTTCT-----TCCTTCTCCTTCACCTGCTTCAGGAAGTTGTCTCTGCCTTTTGAGTGCTTGCTGTGTTCAATCCACACATTGATCCTTCTGGCCAGAATTTTGCCCTTAACTTGCTTTTTTACAATAGTGCCAACTGCATTCTGGGTGACATTGTAGACTCTTCCGAATTTGCCGTGGTAGCACTTATGGGGCATACCTTATTGAACGGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCC-TGTAGATTCTCATGTAT--GTGGCCAAAGGAACAACACCATGGTTCCTAAAAGGCCTAGAGAATAT---ACCAGGTGTTTATCCTCTTTCCCTTGGTGTTCGTCATTTTGGCAAGTTACTGTACGAGACGATGCATGC
s HiC_scaffold_1 59695634 501 - 233722169 AATATAAAGGGAAAAGGTTCTGACAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAAC--GCTGAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACTTG----TTTACTGTAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgtTTGTCATTTTGGCAAATTACTGGA--AGACAGTGGTTGC

a score=3508
s chr3           74481583 80 + 160039680 TAATTTCGGTTTACAGAGATATAC-TGGCAGGCATCCACACCTTCCTCAAGGAAAACCATGTTGAAATTATTTTCAAAAAG
s HiC_scaffold_1 70462969 81 - 233722169 TATCTTGAATTTTCAGCTACATACCTGACAGTCATCCACATCTACTTCAAGGAACACCACGTTGGAATATTTTTCAGACAG

a score=5165
s chr3           74481663 97 + 160039680 TAAAAGATAAGCTTGGTCATAGTACAAGTCCCACACCATGTAGATGAGAACTCCACCTCCACATGATTGTCCTCTGCATAATTCAAGGC-TCTTGAAA
s HiC_scaffold_1 70463442 98 - 233722169 TGAAAGAAAGGCTTGATCATTTTGCAAGGCCCACACCATGTGGCTGAGAAATCAACTACTACAAGTTTATCTCCTGCATCATTCAAGGCTTCTTGAAA

a score=7997
s chr3            74671700 315 + 160039680 TTCTTAGGACTAGAAGTGTTTCAGATTTTATACTTTTAATTTGTTTACTGAATATTTACACCTACATAATGAGACTGCTGAAAAATAACACTCAAATTTAAACATTAAGTTTATTTGTGTTTTATATGCATCTTATACATAAAACCTGAAGGtaattttatataatatttttaGTTCACCTACCTGTGGGCTGC---ATCCTATCA---CAGTTCCTAAGCAAAATTTTCCACAGATGACATGAAGTTACTGTTTCAAAAGCAGCCAATTGTGTAAAATCT--ATTATTTGAATTTTcagattaagatttcatacccagaaat
s HiC_scaffold_1 112014013 310 - 233722169 TTTTTGGACCCAGAAGTGTttcaaatttcattgtttt---tggatTCTAGAATATTTGTA---ACATAATGGGATATCTTCAAGATGAGACCCAAGACTAAATACGAAATTCATTGATGTTTTATATACACCTTATATACACATTCTGAAGGTgattttatgcaatattttttatgtacTTATATTTTGCTTGTGAAGTCATATAAGATCAGTT-----GTGGAATTTTCCACATATGGTGTCATGTTGGCAGCTACAAAATTATGGATTTTGGATCATTTTGGatcttggaatttt--gattatgaaTGCTTACCCTGTAGT

a score=10523
s chr3           74815081 445 + 160039680 GGGCCACAAGAAGGGGGCCAAGCTGACTCCTGAAGAGGAAGAGATTTTAAACAAA-AGCGATCAAAGAAAATTCAAAAGAAATACAACGAAAGGAAAAAGAATGCCAAAATCAGCAGCCTCCTGGAGAAGCAGTTCCAGCAGGGCGAGCTTCTCGCCTGCGTTGCCTCAAGACCAGGCCAGTGTGGCAGAGCAGACCGCTATGTGCTCGAAGGCAAGGAGCTGGAGTTCTATCTGCGGAAGATCAAAGCCCAGAAAGGCAAATGAGCCTCATGCATAGTGTAATAATCTAAAAAAAAAAAAAAAAGTGATATCTGTGTTGACATCACAATGTTTCTGTCATTAATATGGAGAGAACAATGAGGAAGAAAAGTAAAAGTGAATG-----------------AACTAATG--GAACATATTCCTAAAGAGCATGAA--------TTTTTCTTAGTTTTTCACTTAGTCTCAATGT
s HiC_scaffold_1 17389666 433 - 233722169 GAGGCACAAACAGGAG-CCAAGCTCATCCCTGAGAAGCAAGAGATTTTAAacaaagaacaatttaaaaaa--tcaaaagaagtatgtaaaaaagaaaatgaatgcccCCATCAGCA-CTGTCTGAAGAGGTAGTTCCAGTGAGGCAAGCTTCTTGCCTGAACTGCATTAAGATGGGACCAGTGAGGCCCAGGAGAGGGCAATGTTCTAGGGAG-AAGTCGCTGGA-TTCCATGTGAGGAAAATCAGGGTCTGGAACAGAAAGTAAGTCTT-TGC------TCCTGGCTTAGCACATATAATAAAAGTG-------------------------TTTATTATt-ctatgaaagaaacaaaaaagaagatagGCAAAGGGGAATGGGCCTGGTAAGATTGAAGACTACTGTTGAACACTCCTCTGGAGAAACAGAAgaactgttttcttcttcttcattcatttaa-CCCAATGT

a score=68840
s chr3           75391316 1575 + 160039680 ggGTGACTCAGAAATCCTACATGATGTACACCTCTGGCCCCTGGGCCTTCAGCAGTTGGTCATACACGAGTGCACCCGGTGCCCACATCAGCTCTTCCAGCTTTGTCCAGGTGGGCAGTGGCAGCACTTTCCGAGGAAGCCTGGGTACCAGCATGAGTCTGGGCAGCTTTGGCAGGGC---------------ATCACAGTGGTCATGGTGAACCAGAGC-TCCTGAGCCTCATGAAGCTGGAGATGGACCCCAACATTCCAGGCTGTGCTCACTCAGAAGAAGGAGCAAATTAAATCCCGTAACAA---GTTTGCCTCCTTCACTAACAAGGTACCAC-------------------------AGACATCTTGTTGCTGTTGTTGTAGCAACAGAAGACAGCAAGGGGCAACATGGACAGCACGCTTAAGAGCTATATCAGCTACCTTCGCAAGCAGCTGGAAGCCCTGGGCCAGGAGAAGCTAAAACTGGAGGCGGAGCTCAGCAATATGCAGGGCCTGGTGGAGGACTTCAAG----AGTATGAGGATGAGATAAACAAGAGATCAGAGATGGAGAATGAATTTGTCTTCATCAAGAAGGAAGTGGACAAAGCATACAGGAACAAGGTGAAAGTGGAGTGCTGCCTGGAAGGGCTGATTGAT-----------------GCAGATCCATGAAGAAGAGATCTGTGAGCTGCAGTCTCAGACCTCAGACACATCTATGGTATTGTCCATGGACAGCATCTGTTCCCTGGGCATAGA---CATCATCTCTGAAGTTTGTGCCCAGTATGAGGATACCATCAACCGTATCCAGGATGAGGCTGAAAGCATGTACCAGATCAACTAGGAGAAAAGGCAGACCCTGGCTGAGAAGCATAGGGATAACCTGCGCTGCACAAAGACAGAGA----------GAGCCCCAACATCAACTGCCTGCAGACAGAGATTGAAAGACTCAAAGGCCAGAGGGCAACCCTGGAGGCTGCCATTGTTGATGCCGAGCAACGTGGGGAAGAG----TTAAGTATGCTAATGCCAAGTTGCCAAGTTGGCTGAGCTGGAGACTGCCCTGCAGCGGGCCAAGCAGGACATGGTCAGGCAGCTGCTACAGAACCAGGAGCTGATGAACATCA------------ACATCGAGATCTTCACTTACTGCAAGCCACTGGAGGGTGAGCAGAGCAGGCTGGAGTCTGGGATGCAAAACTCA------------------------------GAAGGACTGA----------------GTGCTTCACTAGCCCTGGCTTCAGCTATAGAATGAGATTCTTTCAGCCCTGTTTCAGTTCTGTCCGGGACTCCAGCACTTTTAGCCGCACTAAG---GCCATGGTCGTGAAGAAGATTGAAACTTCCAATGGGAAGCTGGTTTCCCAG-TGTTTGATAGCCTGTCCAAGTGAATG-GCCACCGAAGTCGTTGCCAACCTGGG---CTTCTGCAGCTGCTCAGCCACTCATGGGGGAGAGAGCTATATGACAGAGTGCAAGAAACAAAAGATCTGCAAGAGGATCAGCCCTAACCATCTGGCCAACCTGGGAAGGAATTTCCTATCTGGGATATCCCAATGGCCCCTGCTTTCCACCCAAACCCAATTCAACTG-TATTTTCCAAAATAAAGCCTCATCTGGCTCTATCAAAACAAACAAACAAAA
s HiC_scaffold_1  6526076 1647 - 233722169 GGGTGACCCAGAAGTCCTACAAGGTGTCCACCTCTGGCCCCCGGGCCTTCAGCAGCCACTCCTACACCAGCAGGCCCGGCTCCCGCATCAGCTCCTCCAGCTTCTCCCGAgcgggcagcagcagcagcttcgGGG-------------CGGCCTGGGGCTGGGTGGCTATGGCGGGGCGGTGGTGTGGGTGGCATCACAGCTGTCCAGGTGAACCAGAGCCTGCTGAACCCCCTGAATCTGGAGGTGGACCCCAACAT-CCAGGCTGTGCACATTCAGGAGAAGGAGCAGATCAAGAACCTCAACAATAAGTTCGCCTCCTTCATCGACAAGGTGCGGTTTCTGGAGCAGCAGAATAAGATGCTAGAGACCAAATGGAGTCTCTTGCAGCAGCAGAAGACGTCCCGGAGCAACATGGACAACATGTTCAAAAGCTACATCAACAACCTCCGAAGGCAGCTGGACACACTGGGTCAGGAGAAGCTTAAGCTGGAGGCGGAGCTTGGCAACACGCAGGGGATGGGGGAGGACTTCAAGAGTAAGTACGAAGATGAGATCAACAAGCGTACGGAGATGGAGAATGAATTTGTCCTCATCAAGAAGGATGTGGATGAAGCTTACATGAACAAGGTGGAGCTTGAGTCTCGCCTGGAAGGACTGACTGACGAGATCAACTTCCTCAGGCAGCTGTATGAAGAGGAGATACGTGAGCTGCAGTCGCAGATCTCAGATACATCTGTGGTGCTGTCCATGGACAACAGCCGCTCCCTGGACCTGGATGGTATCATTGCTGAGATCAAGGTCCAGTATGAGGAGATTGCCAACCGCAGCCGGGCCGAGGTTGAGAGCATGTACCAGATCAAGTATGAAGAGCTGCAGACTCTGGCTGGGAAGCATGGGGATGACCTCCGCCGCACAAAGTCTGAGATCTCTGAGATGAACCGCAGCATCAGCCGCCTCCAGGCGGAGATTGAAGCTCTCAAAGGCCAGAGAGCAGCCCTGGAAGCTGCCATCGCCAATGCTGGGCAGCGTGGGGAGATGGCCATTAAGGATGCCAA--------TGCCAAGCTGGCCCAGCTGGAGAGCGCCCTGCAGAAGGCCAAGCAGGACATGGCGCAGCAGCTGCGCAAGTACCAGGAGCTCATGAACGTCAAGCTGGCGTTGGACATCGAGATTGCCACTTACTGCAAGCTACTGGAGGGCGAGGAGAATAGGCTGGAGGCTGGGATGTAGAACTTGAGTATCCACACGAAGACCACCAGTGGCTATGCAGGAATGATGAGCTCACCCTGCGGGGGCCTCACAAGCCCTGGCTT-----------TGGGAGCCTCACA----------AGCCCTGGC---------------TTCACCCGCACCAAGTCTGCTGTGGTTGTGAAGAAGATCGAGACCCGTGATGGGAAGCTGGTGTCTGAGACCTCCGATGTCCTGCCCAAGTGAATGAACCACAGAAGCCTTTCCCAGCCCGCAGCCCTCCCGAGGCTGCCCCAGAGCCTGGGAGGAAGACAGCTGCACGTGGGAG---------CAAGAGACCCACCTGAGGCTCAGCCCTCGCCCTCAGCCCACCCTCGGGGGGAATCTACTGCCT--TCTTTCCCAA--------GCCCTCCACCAAAAACCAATTCacttgtttttttccaaaataaagctTGGTTTTgccacctgaaaaaaaaaaaaaaaga

a score=5606
s chr3            75471291 226 + 160039680 TTCTTGCTTAACTCTGAAGTGTTCCCTGAAGGCTCATGTCTTAAAGAGTTTCTTTGCCAACTGATGATCTTTGGGAAAGTGGCTGGGTCATGGAAGTTTCATCTTCATTT--GTAGATTAATCAACTGATGATCATGTACTTTTACA-cattattgggaggtcatcaaaactaagaggtgggacctagttgaaaaaagtagatcaccatggtatg-cctaggaggatata
s HiC_scaffold_1 179863389 226 - 233722169 TTATGGTTTAGATTTGAAATGTCCCCTTGAAACTCATGTGCTAAAAGTCTTGCTTACCAGCTAATAGGTCTTGGGGAAGCAATTGGGTCATGAGGGCTCTGTCTT-ATTCAAATGGATTTGTGCACTGCTGAGTTTAGACTTTGACAGCATTACTAGGTG--CAAGGGAAGCAGGAAGTGGGTCC-AGTGGAAGGGAATAAATCAGGGTAGCACGACCTTGGGGACTGTA

a score=6873
s chr3            75669258 108 + 160039680 TTCTTTCTTATAGTCAACAAAATGTGTGTTTAGAATTAGCCAGCTGGACTCAGTTTCGATGATCCTCCAATTTTGATGGCAACACCTAGAGCATCATGATTAGGAGCC
s HiC_scaffold_1 219522791 106 - 233722169 ttttttttaatgaacaaaaaaatgtgtatttggaATTAGCCAGCTGGACTCAGTTCACATGATCC--CAATTTTGTTGGCAACACCCAAAGCATCATAATCAGGAGCC

a score=4764
s chr3            76141800 150 + 160039680 TATACACAGCTGTTATAAGTTGTTGCCTCTTTTTCATGAGCTGCAAGCTTATATAGTAGGTTACAGTACTGAACATGGTAGACAATTATAACACAAGGGTAAATATGTGTATAT----TTAAAAGTGTCTGAATATGGAAAAGTATAATTAAAA
s HiC_scaffold_1 110241759 152 - 233722169 TGTACATGG--GCCATAGGGTATTGCCTATGGTTCCTAGGCTAGAAATGTGAACAGCATGTTATTCTACTGAATTCTGTAGGCAACTGTAACACAATGGCAAGTATTTGTATATCAAATTAAACACATCTAAGCAtagaaaaagaacagtaaaa

a score=4085
s chr3            76438349 92 + 160039680 CTGATCACATTAGAGTGGCTAGTGTTTCTCTCTCTGTATCATCCATTTGTGTTCAGAGCCTTTGAACT--TCTCTTTTAGTTATTTGTAGAATA
s HiC_scaffold_1 158279134 94 - 233722169 CTGATCAAATTAGGGCAGTTAGTGTTTTCCTGTCCTTATAATTTGTTTATCTTTGAAGCCTTTGAGCTCCTCTCTTCTAGATCTTCAGAAAATA

a score=5025
s chr3            76438349 146 + 160039680 CTGATCACATTAGAGTGGCTAGTGTTTCTCTCTCTGTATCATCCATTTGTGTTCAGAGCCTTTGAACTTCTCTTTTAGTTATTTGTAGAATAAAGAGCAAGCAATGAGCAGTTTTGAAATATAATCA-TATCTTGTACTGTAGCATA
s HiC_scaffold_1 179630475 140 - 233722169 CTGAGCAAATCAGGGTGACCAGTATTACCATCTGCCTATCATCTGTTTATGTTCAGAGCCTTTGCACTCTTCTGTTGGTTCTTTATAACATACGTAGAAAGTTA-------TCGTGAACTCTGATCACCCTCCTGTGCTGTGGAACA

a score=7848
s chr3            76992398 354 + 160039680 GGCTACACTGAAGGCTTGGTTGTCACCT--GCAACTTGAATAGTATCTTCCACTACACCACCTTTGGTGCTGGGGCTGGTATTGCTCTCAATGACAACTTTTTAAAGCTTATCTC--GATATGATAATGAATATGACTACAGCAACAGGGTGGTAGACCTCATGATCTACATCGCCTCCAAGGAGTAAGAAGCTCTGGACCACCCATCCCAGTAAGCATGTGAAAGCAAGTCACTGTAA-------------------CAACTTGATACCCA----ACATTGAGCATCT-TCTTCAT---AGTTTCCATTCCAGACCCTCACAATAACCATGGGGTCCTAGGGAGTCCAACTCTCTTGAATACAATCAATAAGGTTTGCTATACC
s HiC_scaffold_1 135785117 365 - 233722169 GGCTAca--gaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGATCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCAGCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAGTA----------GGCCACCAGCCTgagcaagaaatgaaaagagagggGCTTTAAGCTGAGGAAGTGTCTTGCCCAAACTCAGCCCCACAACACTCTGAGACTCTCTCCTCCTGTGGGCTCCCATGCCAGACCTCCTGAAGAA----GGGG----AAAGATGCTTACTCTGTCATGTACCATCCGTAAAGTCCACTGTGCC

a score=3869
s chr3           77105205 97 + 160039680 GGGAGTGTTAGGTTACTAATAATTCAGATGTTCATAGATCAGCAAACTGAGGATAGATATAGCCTCACCTCCCGGACTGTGCTCATGTGACAtagat
s HiC_scaffold_1 39210487 95 - 233722169 GGCAGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCT--CTGCCGCCTAATGACACAGAT

a score=22628
s chr3           77560795 634 + 160039680 tttttcatttatttatttttGCTGCAGGTGGGGTTAATGGCAGGTTACTTTCTCTCACTGTGGATTATTTCTGATCCCAT---AAGGGGCCTTCAATGTGGCTGACAGATTCAAAGTCAGGGACAA---CATTTTCTCAAGCCATTTTTCTGCGGCAGTCATTTT------AGATTCATACTCTAAGGTTATTGTACTCGAGTCTGGATAAATTCCACATTCAGCTTCCCTAGGTTCTAACCACCTCAGCTGAGCCCCGTTTT-GCCAGGGAAAG--GTGGTGGGAG-ATAATATGATTCC--TCCTTTAGTTTGTTAAAAACCAAGAGAGAAGATGACCCCCTCCCAC--------------TCCAGCTGCTTCCCTCTCCCCAACCTGGGCTGAAACCCT-AGCACAGAGGGCCAGGTGGAAGCTGATGTCTTTCCTCGTCTGGCTGTTTTAAAGGCACCATTATGAAGTTGGGATGTACAGTAGTTAACAGATATATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtATATATAT-TCATATCTATCATATATACATAAACTGTAAACAAGAGGTAACAGCAGCTTCTAGAAACTGGTTTTGTTCAAGGGTTCCTGTGTGGTAGGCACtgaaaaagtataacgtaaaaa
s HiC_scaffold_1  7177211 596 - 233722169 ttttgtatgtttttttatttGCTCCAGGTGGGGTTTGTAAC-TGTCACTGTCCCACACTCTGGATTACTTCTGATCCCACCACAAGGAGCCCTCAACTCTGCTAACA--CCAGAAATCGGAAACGAAGACTTCTTCCCCTGCCATCTCGCCAAGGGAGTCTCCTTTCTGAAAGAT-----CTCAAAGGTTACCGCAT--GAGCACAGATG---------CTCAGCTTCCC-AGGTCCTGACCACCTCAGCCCATCCCCTTTTTTGGCAGGGAGAGAAGCGGGGGGAACACAACTCGATTCCCCTCCTTCAGCTTATTAAAAACCAAGGGGGAA-----CCCCGCCTGACAGCACACCGTGTCTTCAAGCCGAATCCCTTTCCCCATCCTTGGTTAAAACCCTTCGCACATAAGGCCAGATGGAAGCTGATGTTTTTACTCATCTCGCTGTTTTAAAG-CACCATTATGAAGTCAGGTTGTACAGTAGTTAACAG---Taccttt---------------------------------------tatatatatatctcatatctatcatatatatataaactgtaAACAAGAGGTAACAGCGGCTTCTAGAAACTGGTTTTCTTCAAGGTTTCCTGTGTGGTAGGCACCTGAA----ATACTGTAGAAA

a score=29593
s chr3           77561980 764 + 160039680 CACCTGAAATGCTGTAGAAAAGTGTGGTGTGGTGTTCTCTCAGTGCCCTGCTGCTAGTTGGGTTCTGTTTTGCATGACCAGGAATGATGCTGTTGAGACTGCTCTGCTCG-AGCCTGGAAGAATAGACTCTGCTGCCCAGGGTCTCTATTTCCT--TCCTGTTTGTGCTCCTATCTGATCAGGCTAGAGAAAAC-----CAAAGAGATATATAGAAAAGGAGAAAACAAAGCAAAACAACAAACAAACAAAAACCCAATGTTTTAAGTTTTTATAGAATTTTCCCTCTTTTCCTTTCCTCTCCAAGGAATTACTTCTAGAGTACTTTTTGTTATTACTGATTTTGCTGCAATAACTCTCTTGTTTCATTCACAGCAAGAAACAAAAACCCAAACA----GAAAACCCctctgaaaaagagtagaaaacaaaaagtctgcctcc---------------------------------------------taggaccagagg----------------------------------------ggaaggccaagccctgtggcatttttcctcccctgtggtat--gCATTAAATTCCTTTTATCTCTTCTGGATGCTGAATGAGAGGTGCTT---------------TTCTTGGtgttttattgtattttgt---tttttgtttgtttgtttaactttgttttCATTTCTACTTCAGTTTGCCCCCAAGTTCCTTACACACAAGCAAAATATTCCTTCAGCCAACCAAAGAGATGACAGATGACCGGCACCCTCCACGATCATCCCAGCAGTCTGCCTCACCGCCTCACCAAGTGGCACAAGTTGGAGACGTCTGTGTAGTGGAGCAGGAAGCCAAACACCCT
s HiC_scaffold_1  7177787 813 - 233722169 CACCTGAAATACTGTAGAAAAGTATCTTGTGTGGTGATCTCATCTCCCTGCTGCTAGCTGGGTTCTGTTT-GCATGACCAGGAATGGTGCTGGTAGGAC------GCTCGGAGGCGGGGAGGG--AGCTCGGCCGCCGAGCGTCT-GATTTTCTGCCCCTGCTTGTGCTCCTATCTGATCAGGCTagagacaacaacaacaaaaagatatatagtaaa----------aagaaaaatacccaaTATATAGA--------TTTCTAAAATTTCCTTTGCTCATCTCTCTGG-CCTTCCCTCTGCTAGGCATCATTACCA--------CTGGTTACTCAT--TTTTGTTGCAATAACGCTCTTGT------CACAGcaagaaacaaaaacccaaacaaacagaaaacccctCTGAAA--GACTAGAAAACAAAAGGTTTGACCCAAAAAGGGGGGGAGAGCAGGGAGGGggcttggttttgctttttaaataggACTGAAGATTAACATTGAAAAATCAGGAGATGATGTCCGACCCTTTTTGCAAGGCAAAGCCCTCCGGTATTT--CCACctctgtggtttttgttttaaattcctttt-tctcttctgggTGCTGA--------TACTTCTCTCCATCCTCATGTTCTTggtgttttattgtattttgtgtttttttgtttgtttgtttaactttGT----GTCACTACCTCAGTTTGCCCCTATGTCCCTTACACACAAGCAAAATATTCCTTCAGTGGAGCAAAGAGGTGGCGGATGACTGGCACGCTCCAGGACCGGCCCAGCAGTCT------CTGCCTCGCCAGGCGGCTCATGTTGGAGACGTCGGTATAGTGGACAGGGAAGCCAAACACCCT

a score=8627
s chr3           77562741 111 + 160039680 CCTTTCCATTTCAGTGCACCAGAGGATGTCCTCCTTCTCATTCATGAAGACGGGAAAA-GCTGGT----------CTTTATGGAGTTTGACCTCGTGGTAATGGTCCTCACTTTGCTGAACT
s HiC_scaffold_1  7179569 122 - 233722169 CCTTTCCATTTCAGTGCACCATAGGATGTCCTCTTTCTCATTCATGAAGACGGGGAAATGCTGGTCTTTGCCCTGCTTTATGGAGTTTGACCTAGTAGTAATGGTCCTCACTTTGCTGAACT

a score=5157
s chr3           77562844 95 + 160039680 GCTGAACTTGGCTATTCTGCCTTGCTCCAGATACTCTCAAAGCTCCAGCTTATCTATCATTCACAGTGGATGTCAATGGCCTGTTCAAGCCAGGA
s HiC_scaffold_1  7180227 89 - 233722169 GCTGACCTTAGCTATTCTGCCATGTTCCAGGCACTCCTGCAGCTCCAGCT----TATCGTTCACAGTGGATGCCAACGGCCTG--CAAGGTAGAA

a score=5487
s chr3           77562916 107 + 160039680 TCAATGGCCTGTTCAAGCCAGGAAGGTTATCTCAGTAGTAACGGGCCCCGTGTGCAGCCGAAGCCTTCTTTGGCATCTATCACCACAGAACTGGATT-----CAAGAGATAG
s HiC_scaffold_1  7182393 111 - 233722169 TCACCAACCTGTTCATACCGGGAAGGTTACCCCAGAAGTAGCGGGCTCTGTGTGCAGCAGACA-CTTCTTTGGCATCGATCATCACAGGGTTGGACTATAAACAGGAAACAG

a score=4908
s chr3           77563012 100 + 160039680 TCAAGAGATAGAGAAATGTCCCTCTTGTCACTAACATCCATGGCCAGCACATTTTCAAAGACCTCAAGAAGGGAGATGATCGCCCCTTCTTCTGGCTCTC
s HiC_scaffold_1  7183482  99 - 233722169 TCGAGAAATCGCGAGATGTCCCTCTTGTCACTAACGCCCATGGCCACCACATTCTCAAAGAGC-CAGAAGAAGGGGCGGTCATCTCCCTCTTTGGGCCTC

a score=12739
s chr3           77563109 316 + 160039680 CTCTTGTGCATTCATCAATGTTCTCTGTGACCTTAGGTTTCTCTGTTGGGCTCTTTCTGGGTTTCTTGGCTGGTGGGGGTGGGGCATAAGCAGCTGCCTCAGGATCCACCAACAGTGCTTTGTGTAAACTTCCTTGTAAGGATTCTTCTCCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGGTTGCTCCAGGCCCTTAGGACCCAAAGGCTGGAAGCCGCTGAGGGTCCATTCAATCATCTGCTTGTTCTGTACCTCCACAGCTTTGCCACTGTCACTTTTGTCACTGTCATGGCAAGCTCGAAACAGCTTCCCTGCACTACTGCTGGCCACCTGGAGG
s HiC_scaffold_1  7188900 582 - 233722169 CTCTTGTGCGTTCATCAATGATCTCCTTAACCTTGGGTTTCTCTGTTGTGCTCTTCCGTGGCTTTTTGGCTGGAGGAGGGGGTGCATATGCAGCTGCCTCAGGCTCAACCCACA-TG-TCTGTGTAAACTTCTTTGTAGGGATTCTTCTCCTCTGCAccagaaaggaaagagaccaGGCTCATTGCAGGCAAACACAGAACACCAGCTCCCTTTCTGTGCTGCCCACAGTGGGGTGCATCTAGTCCCTGGCCAGTTCCTCCCATTCCTGGGTCCCGAGAAGCGAACAGGGGACAGTGAGCCCAGGGGCAGTCCCAGGAGGCAGCGGCCATCCCCGCCTGAGCCCTCTGCGGAAGCTCAGCAGCCCTCCCCAAGCACAGCAGGTAGGGCATCCGGGAGATTTGGCCGGGGCCTGCATTCACCTTCCGGTGGCTCCAGGCCCTTGGGGCCAGAGGGCTGGAACCCTCCAAGGGCCCATTCGATCATCTGCTTATTCTGCACCTCCACAGCCTTAGCAGTGTCACTCTCGTCACTGTCATGGCAAGCTGGGAACAGCTTCCCCGCACGGCTGCTGGCCACCTGGGGG

a score=6536
s chr3           77563392 135 + 160039680 AGCTTCCC-----TGCACTACTGCTGGCCACCTGGAGGACTTCATAGATGGCTTTGCAGTACACGGGCTGCTTGTTGTAGGCAGTCTAATGGAACGCACTGTAGAAGGGGCGAAGTGGCATGAGATTCTTGACACATACC
s HiC_scaffold_1  7189671 130 - 233722169 AGCTCCCCGGGGGTGCACT---------CACCTGCAGCACTTCATAGATG-CCTTGCGGTACATGGGCTGCTTGTTGTAGGTGGCCTGGTGAAAGGCGCTGCAGAAggagctcagcggcatcagcttCTCAACGCACACC

a score=18216
s chr3           77563520 381 + 160039680 ACATACCACTGAGAACTTGCCATCTCCGAACCACACGACCCAGTGAGTGCCTCCAGCTGCTAGGCTACAGCCTGTCATCCACCAAGACACAATTAGGCCTAGCCACCAAGAGAAGCCCCGAAGTTTCCCCCACACCAGCTCTC-AATGCCAAAGCTCCGGCCATCCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACACTTGGGCTTATCATCATCTGTTTTGGTAACATTCTTGTCCCCAGCATCGGTCCCTACTGGCTCAAGGGTGGTGGCCACAGTAGGAGATACAGGGTCCATGGGCTGCTGCACAGCAGAAGGGCTGACC-CCTCCACCTTCTGGGACTCTTCCAGAGGCCTGGTTCTCTTCCACAGCATTCATTACTACAATAACCTTGGCTTTCTTCTCAGCC
s HiC_scaffold_1  7190184 660 - 233722169 ACTTACCACCGAGAACTTGCCGTCTCCAAACCACATGACCCAGCGGGTGCCTTCAGCGGCTCGACTCCGGCCCGTCATCCACCAAGACACAATTCGGCCTGGCCACCAGGAGAAGCCCCGCAGTTTCCCCCACACCAGCTCCCCAATGCCAAAGCCCCGGCCGTCCTGGAGCCCCAAGGAGCAGAAATCATTACATGACGGTCACGAGACCCTGCCACCCTGGTCCCCCCTTGGCAACCCCAGCCCCGAGTCTCTGGGGGCGCAACAGCCAGGAGGGAGCTCCACGTGATGGAGGGAGACAGCAAAGTCAGGGAGATGAAGAGGCCCAGGGTCAGGTGGAGAGAGCGAACAGCCAGTGGGAGATGGAGAGCAGGGCAGGAGGAGCTGGTGGTGGAGGCCCCCGGAAAGAGCGGGCAAGGCTGGCGAAGAAGCAAGCCGCTCACCTCATATTCCGGCTCGTCGTCAGCTGCTTTGGTGGCATTCTTGTCCCCAGCATCGGCCCCCACGGGCTCAGGTGTGGTGGCCACAGTGGGGGACGCCGGGTCAGTGGGCTGCTGCACGGCAGGAGGGCTGGCCTCCTCCACCTTCTGAGAGTCC-CCAGAGGCTGGGTTCTCTTCGACAGCATTCATTACTGCAATCACCTTGGCTTTCTTCTCAGCC

a score=3429
s chr3           77822973 69 + 160039680 AGAGCTCAACAGGGCCTAAACCTCATTAGCATGTGGAGACCAGGCATTTCTGTATTAGTTGGCA--CAGAG
s HiC_scaffold_1 55253140 69 - 233722169 AGGGATCATCATGGTCTAAACCTCATTAGCATGAGGAGACCAGCCATCCCTACAT--GTAGGCATTCAGAG

a score=12319
s chr3            78318254 424 + 160039680 ACTCCAGATACCAGCATTGGCTACTTGATTGTCTCTTTTGCCATCTAGCTGAATCTCTGTTCTGCCTT-ACTCAATAT-TTGGTGATAAGGCCAAATCTTGCCCTGGGGACTTTGAATCTTGCTTGATTCTTCACACTGTACATTATTAGAATCACTTTCCATTACTCCATGGAGTTTTCTTTCTATATTGTACTCCATAATCCTTAGTCATTTTTCTCTTCACAAAACAAACTTTCCCTAAATTGAACTCTTCTACCTTTGCATTGGTTTCTTTTGCTCTCTTATCAGCTTCTTGTTCAAAGAAAGCCATCACATGTTTAGTCTGCTTTAGTAC-TTGACACTGTAACTGAGTGTCATGGTGAAAGTATTGTTTGGCTGA-AGGAAATTAGCTTGAGTTTGGCT---------------AGAAGAAAAAAAAAAAAAAAACT
s HiC_scaffold_1 116884336 432 - 233722169 ATTCCATCCAGCAGTATTCGGTACCTGGTTATATCTTTTACTACCTTGCTGAGTCT--GCTTTACTTTCAGTTAGCAGGTCAGTGATAAGGTCATCTCTTGCTCTGAAGACTTTCAGCCTTACTTGATTCATCAAGTTGAgcatctt---aattttcttttgctgctcaatttgcttttcttctcaGA--ATATTCCATTATCTTCAGTC-TTTGGATTTGCACAAGATGACCTTTCTCAATGTTGCACTCTTCTGCTTTTGCATCTATGTCTTCAGCTTTCTCATTGGCTTCTTGTCCAGTGAAAGCCATCATGTGCTTAATCTACTTTTGTACATCAGCATTGCGA---AGGGCCATGGCAAAAGTGACACAATGCTGGTAGGCAACTGGGTTTAGCTTAATTTTATATGAAGCAGTAAGTACAAATAGGAGACAAAAACT

a score=8630
s chr3           78318265 347 + 160039680 CAGCATTGGCTACTTGATTGTCTCTTTTGCCATCTAGCTGAATCTCTGTTCTGCCTTACTCAATA-TTTGGTGATAAGGCCAAATCTTGCCCTGGGGACTTTGAATCTTGCTTGATTCTTCACACTGTACATTATTAGAATCACTTTCCATTACTCCATGGAGTTTTCTTTCTAT--ATTGTACTCCATAATCCTTAGTCATTTTTCTCTTCACAAAACAAACTTTCCCTAAATTGAACTCTTCT---ACCTTTGCATTGGTTTCTTTTGCTCTCTTATCAGCTTCTTGTTCAAAGAAAGCCATCACATGTTTAGTCTGCTTTAGTACTTGACACTGTAACTGAGTGTCATGG
s HiC_scaffold_1 30450128 347 - 233722169 CAGCTTCTGGTACACAACTGTGTTGGCCACAATTCTACTGAGTCTCAGCTTTGCCTCACTGAGCAGTTCTGAGATGAGGTCGTCTCGGGCTGTCAGGACTTTCAGCCTCGCCTGGTTCCTCATGGTGGACAGCT---GGATTTTCTTCTGCTGTTCTAtctgcttctccttcttctcaTAATACTCCATAATCTTGAGTCGCTGGGA-CTGTACAAGGCGTCCTTTCTCGATGTTGAACTCCTCCTCAGCCTTAGCGTCTATTTCCTCTGCCTTTTCATTGGCTTCCTGCTCAATGAAAGCCATCATGTGCTTAATCTGCTTCTGCACAT--CAGCATCAGTTAGAGCCATGG

a score=22625
s chr3            78486798 918 + 160039680 ACACATCTAGCGATTCCTTGCACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATG----AAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCA
s HiC_scaffold_1 186152562 927 - 233722169 ACATACATAAGGTCTCTCTCCAGTATGGATAGTTTTATGTTGAAGGAGGAGAGAGTTATAACTAAAGGATTTGCCACACTCTTTGCATTCATGGGCTTTCTTTCCTGGGTGAATGCTCTTATGGACTGCAAGGCCTGAGCTATAGCTGAATGCTTTGCCACAGACATCACACTTataaggtttctctcctgtgtgaatcCTTTTATGCACTATGAGGCCCGAGCTGTTCCTGAAGGCCTTGCCGCATTCATCACattcataaggtttctctccagtgtggatGACTTTATGCTGAATAAGGAGAGAGCTATAATTGAAGGATTTCTCACACTCATCACATTTATATGGTTTATCTCCAAAGTGGATGCTTTTATGA-TTTAAAAGTGTCCTGCAAGT---AATGAAGGCCTTTCCACACTCATCACATTCATAGGGCTTCTCACCTGTATGAATCCTTTTGTGAACCCTCAGACCAGAgctattactaaaagtttttccACAGATGTCACATTCATAAGGTTTTTCCCCTGTGTGTATCCTTTTGTGGACTCGGAGACCAGAACTATTTCTGAAGGCCTTCCCACACTCACCACACTCATAGGGCTTTTCTCCAGTGTGGATCCTTTTATGCTGGTCCAGAACAGAGCTATAATTGAAGGATTTTCCACACTCATCACATTTACAGTTCTTTTCCCCAGAGTGAGTGCTTTTATGGTTTATAAGGCTGGAATAGGACATATAAGCTTTCCCGCATTCATCACACTTGTACGGCTTCTCCCCAGTATGGATCCGTTTATGGACTCGAAGGCTGGAGCTACTTCGGAAAGTCCCTCCACAGTCATCACACTCATAGCGTTTTTCACCAGTGTGCATAATTTTATGTTGCACGAGACGGGAATTATATTTGAAGGATTTCCCACACTCATCACA

a score=20499
s chr3            78486798 1034 + 160039680 ACACATCTAGCGATTCCTTGCACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGA-----AGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggaccc----gctgat--------------------------------------------------------------------------------------------------------------------------------------ggctgtggaggttgaagctcaag------ctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCT---------GAAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTTT
s HiC_scaffold_1 186151579 1186 - 233722169 acatacataaggtttctcccctgTATGGATCCTCTTGTGCTGAGACAGGAGAGAGCTGTAACTGAAAGATTTTCCACACTCAACACACTTGAAAGGTTTCTCTCCAAGATGGACTCTTTTATGGCTT-----ATAAGAGTTCTGCTTGAGAAAAAAGCCTTACCACATTCATCACATGTATAGGGTGTCTTGCCAGGGTGGGTACTTTTATGATTAATAAGGCTTGAGTGTGAGATGTAGGCTTTTCCACACACATCACATTCATAGGGCTTTTCCCCAGTATGTACTCTTTTATGAACTTTAAGGCTTGAGTTGTTTCTGAAGACCTTTTCACATCTAtcacattcatagggtttctctctaGTGTGTACTCTTTTGTGTTGAGAAAGAAGTGAGGTGTAATTAAAAGATTTCTCACAAACATCACATTTGTAGGGCTTCTCACCAAGATGAATTTTTTTGTGATTTATAAGGGTTCGGTATGTGATGAAGGC-TTCTCACACTCGTCACACTTAAAGGGCTTCTCCCCAGGGTGCACCCAAGGGATGATTTATAAGGCTCGAGAGTGAGATATATGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTTTATGTACTTTAAGGCCTGAATTATTTCTGAAGGCTTTTCCACACTCGTCACACCCAAAAGGTTTCTCCCTGGTATGAATCCTTTTATGTTGTTCAAGGGCAGAGCTGTAGTTGAAGGATTTCTCACAATAGCTACATTTATAGGGCTTTTCCCCTAGATGGATACCTTTGTGATTTTTAAGGCTAGAGCGTGAGATATAGGCTTTCCCACACACATCACACGGGTATGGTTTTTCCCCGGTGTGAAGCCTCCGATGGACTTTGAGGCCTGAATTGTTTCTGAAAGTTTTCCCACACACATCACATACATAAGGTCTCTCTCCAGTATGGATAGTTTTATGTTGAAGGAGGAGAGAGTTATAACTAAAGGATTTGCCACACTCTTTGCATTCATGGGCTTTCTTTCCTGGGTGAATGCTCTTATGGACTGCAAGGCCTGAGCTATAGCTGAATGCTTTGCCACAGACATCACACTTataaggtttctctcctgtgtgaatcCTTT

a score=18339
s chr3            78486815 1028 + 160039680 TTGCACTGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGA-------CTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctga-----aggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggt-gtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcc------------------------------------------------------------------------------------------------------------------------------------------------tctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCAT-CCTCTG--------AAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTT---TGTTGAATGGGG
s HiC_scaffold_1 186151428 1183 - 233722169 TTCCACTGTGAATACTTTTATGGTTGATAAGACTTGAATGTGAGATGTATGCCTTCCCACATTCATCACATCCAAAGGGTTTTTCACCTGTGTGGATCCTTTTATGC-------ACTGTGAGGCCTGAGCTATTCCTGAATGCCTTCCCACATCCAtcacatacataaggtttctcccctgTATGGATCCTCTTGTGCTGAGACAGGAGAGAGCTGTAACTGAAAGATTTTCCACACTCAACACACTTGAAAGGTTTCTCTCCAAGATGGACTCTTTTATGGCTTA-----TAAGAGTTCTGCTTGAGAAAAAAGCCTTACCACATTCATCACATGTATAGGGTGTCTTGCCAGGGTGGGTACTTTTATGATTAATAAGGCTTGAGTGTGAGATGTAGGCTTTTCCACACACATCACATTCATAGGGCTTTTCCCCAGTATGTACTCTTTTATGAACTTTAAGGCTTGAGTTGTTTCTGAAGACCTTTTCACATCTAtcacattcatagggtttctctctaGTGTGTACTCTTTTGTGTTGAGAAAGAAGTGAGGTGTAATTAAAAGATTTCTCACAAACATCACATTTGTAGGGCTTCTCACCAAGATGAATTTTTTTGTGATTTATAAGGGTTCGGTATGT-GATGAAG-GCTTCTCACACTCGTCACACTTAAAGGGCTTCTCCCCAGGGTGCACCCAAGGGATGATTTATAAGGCTCGAGAGTGAGATATATGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTTTATGTACTTTAAGGCCTGAATTATTTCTGAAGGCTTTTCCACACTCGTCACACCCAAAAGGTTTCTCCCTGGTATGAATCCTTTTATGTTGTTCAAGGGCAGAGCTGTAGTTGAAGGATTTCTCACAATAGCTACATTTATAGGGCTTTTCCCCTAGATGGATACCTTTGTGATTTTTAAGGCTAGAGCGTGAGATATAGGCTTTCCCACACACATCACACGGGTATGGTTTTTCCCCGGTGTGAAGCCTCCGATGGACTTTGAGGCCTGAATTGTTTCTGAAAGTTTTCCCACACACATCACATACATAAGGTCTCTCTCCAGTATGGATAGTTTTATGTTGAAGGAGG

a score=23427
s chr3            78486821 913 + 160039680 TGTGGACCCTCTGGTGGTAGACGAGATGCGATCTCTGACTGAAGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCC
s HiC_scaffold_1 186152333 922 - 233722169 TATGAATCCTTTTATGTTGTTCAAGGGCAGAGCTGTAGTTGAAGGATTTCTCACAATAGCTACATTTATAGGGCTTTTCCCCTAGATGGATACCTTTGTGATTTTTAAGGCTAGAGCGTGAGATATAGGCTTTCCCACACACATCACACGGGTATGGTTTTTCCCCGGTGTGAAGCCTCCGATGGACTTTGAGGCCTGAATTGTTTCTGAAAGTTTTCCCACACACATCACATACATAAGGTCTCTCTCCAGTATGGATAGTTTTATGTTGAAGGAGGAGAGAGTTATAACTAAAGGATTTGCCACACTCTTTGCATTCATGGGCTTTCTTTCCTGGGTGAATGCTCTTATGGACTGCAAGGCCTGAGCTATAGCTGAATGCTTTGCCACAGACATCACACTTataaggtttctctcctgtgtgaatcCTTTTATGCACTATGAGGCCCGAGCTGTTCCTGAAGGCCTTGCCGCATTCATCACattcataaggtttctctccagtgtggatGACTTTATGCTGAATAAGGAGAGAGCTATAATTGAAGGATTTCTCACACTCATCACATTTATATGGTTTATCTCCAAAGTGGATGCTTTTATGATTTAAAAGTGTCCTGCAAGTAATGAAGGCCTTTCCACACTCATCACATTCATAGGGCTTCTCACCTGTATGAATCCTTTTGTGAACCCTCAGACCAGAgctattactaaaagtttttccACAGATGTCACATTCATAAGGTTTTTCCCCTGTGTGTATCCTTTTGTGGACTCGGAGACCAGAACTATTTCTGAAGGCCTTCCCACACTCACCACACTCATAGGGCTTTTCTCCAGTGTGGATCCTTTTATGCTGGTCCAGAACAGAGCTATAATTGAAGGATTTTCCACACTCATCACATTTACAGTTCTTTTCCCC

a score=22242
s chr3            78486863 979 + 160039680 AGCCCTTACAGCAGATGCCGCAGATATAGGGCTTCTCCCTGGTGTGGACCCTCTGGTGTCTTTGGAAGTGTGAGGCCTGACTGAAGCCCTTCCCACACTGCTGacacgtgtagggtttctctcctgtgtggaccctctggtgaatactaagccctgtgctctgggtgaattccttcccacactcctcacacttgaacggcttctccccggtgtgaattatctgatggactaggagatgggatctctggctgaaggctttcccacagctgtcgcactgataaggcttttcccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGA-------CTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGA---CCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggaggttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCT---------GAAGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTCTGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTT---TGTTGAATGGG
s HiC_scaffold_1 186152459 991 - 233722169 AGGCTTTCCCACACACATCACACGGGTATGGTTTTTCCCCGGTGTGAAGCCTCCGATGGACTTTGAGGCCTGAATTGTTTCTGAAAGTTTTCCCACACACATCACATACATAAGGTCTCTCTCCAGTATGGATAGTTTTATGTTGAAGGAGGAGAGAGTTATAACTAAAGGATTTGCCACACTCTTTGCATTCATGGGCTTTCTTTCCTGGGTGAATGCTCTTATGGACTGCAAGGCCTGAGCTATAGCTGAATGCTTTGCCACAGACATCACACTTataaggtttctctcctgtgtgaatcCTTTTATGCAC-------TATGAGGCCCGAGCTGTTCCTGAAGGCCTTGCCGCATTCATCACattcataaggtttctctccagtgtggatGACTTTATGCTGAATAAGGAGA---GAGCTATAATTGAAGGATTTCTCACACTCATCACATTTATATGGTTTATCTCCAAAGTGGATGCTTTTATGATTTAAAAGTGTCCTGCAAGTAATGAAGGCCTTTCCACACTCATCACATTCATAGGGCTTCTCACCTGTATGAATCCTTTTGTGAACCCTCAGACCAGAgctattactaaaagtttttccACAGATGTCACATTCATAAGGTTTTTCCCCTGTGTGTATCCTTTTGTGGACTCGGAGACCAGAACTATTTCTGAAGGCCTTCCCACACTCACCACACTCATAGGGCTTTTCTCCAGTGTGGATCCTTTTATGCTGGTCCAGAACAGAGCTATAATTGAAGGATTTTCCACACTCATCACATTTACAGTTCTTTTCCCCAGAGTGAGTGCTTTTATGGTTTATAAGGCTGGAATAGGACATATAAGCTTTCCCGCATTCATCACACTTGTACGGCTTCTCCCCAGTATGGATCCGTTTATGGACTCGAAGGCTGGAGCTACTTCGGAAAGTCCCTCCACAGTCATCACACTCATAGCGTTTTTCACCAGTGTGCATAATTTTATGTTGCACGAG

a score=15659
s chr3           78487120 761 + 160039680 ttcccacagctg-tcgcactgataaggcttttc-------ccccgtgtgcactctctgatgaGTCTGAAGATATGAAGTCCGACTGAAGCCCTTCCCACAGACACTGCAGACAAATGGCTTCTCTCCTGTATGGACCCGCTGGTGGCTTTGGAAGCTTGAGGCTGAAGTGAAACCCTTCCcacactcttcacatttatatggcttctctcctgtgtggacccgctgatggctgtggaggttgaagctcaagctgaagcgcttcccacactcgtcacacttgtaaggtttctcctcagtgtggactctctggtgggtgtggagg---ttcgagctgcagctgaagcgcttgccacagtctccacacttatatggcttctctcctgtgtgaatcctctcatgGGCCTGGAGGTGTGACAACTTTGTGAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCATCCTCTGA---------AGACGAGAGCTCTGACTAAATCCTTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTTGCCCGTTTGCACTCTC---TGGTTAGTCTGAAGATGTGCGTTCTTGCTGAAGCCTGTGCCACACTTGTGACGTGACTATTGCTTTTTTCCTGGATGAACACTT---TGTTGAATGGGG------------------GTGCCCTCATGTGTACTACGTACAGGGGACTTTTCCCC
s HiC_scaffold_1 73252694 787 - 233722169 TTTCCACAACTGATTTCATTCATGAGTTTTTTCAATGAGTTTTCATGTGC-----TTGATAAGT-------GATGCATTTTGTTTGAAGGTtttcccacattcattacattcatagggtttctctcctgtgtgggATCTCTGATGTATAACGAGTTGTGACTTTGCattgaaagcttttccacattcatTGCATTCATATGGTTTCTCAcctgtgtgagttctttcatgtacaaTGAGATGTGACTTTtggctaaaagctttcccacattcattacattcaTATGGTTTCTCCCCGGTATGAACTCTCTGATGT-TGAGTAAGACCTTCAATTTGT--TTAAAGGCCTTCCCACACTGATTACATTCGAAGGGATTTTCACCAGTATGGGTTCTCATATGGTAAGTAAGAGATGAGCTATGTCCAAAGGCTTTTCCACATTCATCACATTTATAAGGTTTCTCTTTTGTATGAGTTCTTTGATGTATAATGAGGTGTGACTTTTTGCTGAATGTTTTCCCACACTCATCACATTCGAAAGGTTTCTCACCTGTATGAATTCGCATATGTTTTGTCAGGGATGAACTATACTTAAAACCTTTGCCACATTCATTACATTCATATGGTATTTCACCTGTATGAGTTCTCACATGTTCAGT---AAGAGATGAGTTATACCTAAAAGAttttccacattccttacattcatAAGGCTTTTCACCTGTATGAGATCTCACATGTTGGATAAGGTTTGAGCTGTGTCTAAAAGTTTTTCCACATTCAGTACATTCATAGGGCTTttcccc

a score=3948
s chr3           78487533 134 + 160039680 GAAGCCCTTCCCACACACCTCACACTTGTGAGGCTTCTCTTCAGTGTGCACACGGCAGTGGATGTTGAGATCTGAGGTGCGGCTGAAGCCCTTCCCACAGCTGTCGCAGTGGGAGGGCTTCTCCCTTGTGTGCA
s HiC_scaffold_1 40894524 134 - 233722169 GAAGCCCTTGGCACAGAGGTCGCAGGTGAAGGGCTTGAAGCCCGTGTGCTTGCGGCTATGCGTGATGAGGTTGGAGCTCTGGCTGAAGGCCTTGCCACACACCTGGCACTTGTGCGGCTTCTCACCTGGGGGCA

a score=4863
s chr3           78588438 272 + 160039680 CTGCTATAGTGTGGATATGGTTCAAATATGTTCCCCAGAGTTTTCTGTATTGGAATCTTGATTGCATTGTGAAGATTCTTATAGATATTAGAAATTAAGAAGTAAGGT-TAGTATGAGATAATTAAATCACCAAGGCAACTTCCCACAGAAGACATTAATGTACTTCTTGTGGGACCCTGACTAGCTCCCATGAATGAATTGTCCCAGAAAGAGAA---------CTTGCAAATTCCCAGGCTCTATCTTCCTGTCTTTCTGAACCTCCCTTTACCCATGCT
s HiC_scaffold_1 13247547 267 - 233722169 ctgctgtggtttgaatgtgggTCA---------CTCAAAGGTTCATGTGCCAAGAGGTTAGTCCTCATGTGCTCATTCTGGGAGTGGCTGAACCTTCAAAAGATGGGCGTAGTGAAAGATGATTAGGTCCTTGTGGGTGCTCCCCTCAGAAGGGATTAATGTGCTTCCCACAGGACCCCAATTAACTCCTGTGAGACAGCTGTTATTTAAAGAGCACACCTGGCCCCTGC--ATTcc----ctctggcctcctgtctcACCACACAGCCTGTCCTGCATGCT

a score=5114
s chr3            78588441 396 + 160039680 CTATAGTGTGGATATGGTTCAAATATGTTCCCCAGAGTTTTCTGTATTGGAATCTTGATTGCATTGTGAAGATTCTTATAGATATTAGAAATTAAGAAGTAAGGTTAGTATGAGATAATTAAATCACCAAGGCAACTTCCCACAGAAGACATTAATGTACTTCTTGTGGGACCCTGACTAGCTCCCAT--GAATGAATTGTCCCAGA-AAGAGAACTTGCAAATTCCCAGGCTCTATCTTCCTGTCTTTCTGAAC--CTCCCTTTACCCATGCTACTACCCTAATGTCATCTGT--------------------------GATGCTAAGATGTAG------------CCATACATTTGGATCTCCACAAATGTGAGCTAAATGAACC---------TACAAACAGCCCATCCTCTAGTGTTACATTATAGCAACAGAAAATAGTCTAA
s HiC_scaffold_1 232457777 418 - 233722169 CTTTGGTTTGGATATAGTTTGAGGGTGTCTCA----------TGTGTTGGAAGCTTAGTCCC----------------TAGCAAGGCAATGTTTGGGGGGTTGGTTAGTGGGAGGTGCTTAGGTCACTGAGAGCTCTGCCCTTTGAAGACATTAAGGTAATTCTCTTGGGACCCCAGATAGTTCCCAGGAGAATCAGTTGTTACAAATGAATGAACCTGAATGTTGC--ATCTCTGTCTTCCTGCCTTGCCATATGGCTTCTCCTA-CAGTGTTACTAACACTGTGATGGCTGTGTCCATCATGCATGAGGCCCTCACCAGAGGCCAAACTGATGGGACTTCCTGACCCAGACTTCCAGG-CTCCAAAatactgagctaaataaatcacttttctttataagttactGAGCCTCagttattttgttacagcaatggaaAATTAACTAA

a score=10189
s chr3            78685475 316 + 160039680 CTTGCTTCTGATTAAAGCC-------CAGAGGTTAGGAATAATACTCACATTGGCTTCTGAACTTTTTTGAAGGGCAGACTTGGTGACCTTGCCAGTTCCAGCAGCCTTCTTGTCTATGGCTTCAATCATACTCAT-GCAACAATTTGTCCTAC-CAAAAAATAGCAAAACAACCCAGA---GAGCAGTCAGAGAAGATTTC--TACATATGGACTTG-CTGGGACCATTTCAATATCTAG--AGATCACCAGATTTCTAGAATTTAGGGCCACCTTTTAGCTTCTTACTTGATAAATGAACAGTCTTTGCTTTCAGCTTATTAAACTTGCAA
s HiC_scaffold_1 211033186 318 - 233722169 CCTGCTGCTGATTAAGAATGGTGTGAAAGGTGTTAGAGATAATATTCATTTAGCCTTCTGAGTTTCCTCG----GCAGAAGTGGTGACCTTGCCAGCTCCAGCAGCCTTCTTGTCCACTGCTT---TGACACCCACAGCAACTCTCTGTCTCATATTGTGAACAGTGAAATGATTCAGACATGGATAATCAGAGAACTTCTCAACACACATGGGCTTGCCTGGAACCATGTCAACA-CTGGCAACATAACCAGGTTTCAAGAATTTGGGGCCATCTTCCCATTTCTTACCAGAT-------CAATCTTTTATTTCAACTcagcaaacttggaa

a score=14757
s chr3            78758501 678 + 160039680 TGGGAAGGGAGCTGAGAAGCAGTGCTTCCCTGATTTCACACACAGAAAGGGAACGGTGCGATGAAG--------CTGGCAGAAGGCCCGTTCTGATCTGCTTAATAAACCCAGTGCATC-CTAGACTGGCCGGGAGGCTTGTGCATCTTCAGATACTGCCTTCCAGGGCCCTCCAC--AGTTTTCATCAAAGCCTCC----CCACTGCGAAGCACTCCATTAGGAAGGCTCAGTGCCTCTTAACACCGGGTAGGGAATATGTCACAAAAACAA---------------ATAAGAAAACTGGTC--AAGAAAAGAAGAAAACACAGGAAGCATCAACAGCAATGGGATTTAAAATAATGGGCCAGAAGCG-------TGTCAGAAGGGCTGTTTTCATTCTTGGAAGCCT---CTGCTGTCTGGGG--------------------------------CCATAAGTTGTGCTTAGTGTGTGAAGGATAG----GAC---TCGTTCTACCTAAATTTTCTTACAGTGAAGTACTGTTTTAACAGCTCTGTCTACCTTAGAAGTAATTGGA---CCTGTTTTCATGCCTTTCATAAGGAGAGACCTCTTGTGTGACA--------AAGTTCTGTAGTCATGACTGGAGCTGGACCACTGATCTA--------------------GTTCAGGTGTGAAGCATCTTACTTGGATGCTATGTTCTGATGTGGTTGGTACTGTGGTAGATTCTCTCAGATTTTGTGGGG----CTTTATCTCATCAGCACCCCATGATAAA
s HiC_scaffold_1 157881547 772 - 233722169 tgaaaagggaggTGGG--------CCTTACATGTCCCACAGGCCTGGAAGGGAGAGTGCGGTGGAGAGTCGTGACTGGGAGAGGAGCACTACAGATCTGCTTGGTGAACC-AGTGCATCACCATGTTGGCTTCGAGGTCTCTG-ACCATCA-------CCTTCTAGGGTTTTTCACCCAGCATTCACCAAGGCCTCCTCCCCCACTGTGAAGAATTCCATCACAAAGAATGAATGGTTCTTAACACCTAGCAGGTAATATGCCACCAGGTCAATACTTGGAATCCGACATGGGAAAACTGCCCTGAGGACTCAGAGGCTGCACTGGAAccataattgaaaa--aaatatacaaaactgaATAGGAAGATGTTTTATTGCTGGAGGGGCTGCTGTTGGTCATGGAGCACTGTGCTGCTATCTTGGGAATGTTCAACGAGATAGGAGTGACTGAAAAGGCTGTAATTTGGCCTCAAAGTGTGAAGGATAGATAGGACACATCATTCCACCTACATGTATTTAGAGGGAAGTGTTAGTTTAACAGCTTTGTCTATCTTGGTAGTAACTAGAAGTCCTATGCTCATGAACTTCATAATGAGAGGCTCTTTG-GTGACAACTGGTGTAACTTTTGCAGCCATGACTGATGCTGGAATGCTGGTGCAATCCACACAACACGATCGGCATCCAGGCCCAAAGCATGTTGCCTGGTTGCTCCATTGTGGTGTGATGGATGGTGTGGTGGCACTTCT--GACCATATGGGGTGGTCATCTCCTCGTCAGAGCCACATGGTAGA

a score=26101
s chr3           78891829 593 + 160039680 ttttAACTTTATCTGCATTTATTTCATGCTGAATTTATTCCCGGTCCATGAGTTTTTGTTTCTTCAGTTTCTTCTGGGATATCTTTTTCTG----------------------------------------------------------------------------------------------------------CTCTTCTGGCTTTGGAACGATCTGTTCCTTCT-CAGTGAGGATCATCTCACTGTGGCAGGGGGAGCTCGTGTATGGGTTAATCTGGCCATGAGCTCTGTAGGTTCGTCGGCACATCTTAGGTGCCTTGTTCACCTGGATGTGTTGAATGACTAGAGAATCTAAGTCTAAACCCTTAAGTTCAGCATTACTCTCTGCATTTTTAAGCATGTGCAGCAAAAATTCAACACTCtttttttttttttttttttttGGCCACCGACCCTGCGTCCAGCTCCATCCACTGTTTGGCCTGGGCGCACCTACTGACTTCACCATTATACCGCCG-AATGGCACACATTGCTTCTTTAAAGTGACATCCTTCAGATACTTGGTGGCTTTGCAGATATGCATATCCTTGATGGCATGGGCAGTTTTCCGGGTGTTCTTAAAGTGAGCACGAAGGTTTGTACTTCTTGATTTGCATGA-TTTTGTGGAGTTTTCTGGGTCAAGAGAATAGCGAACC
s HiC_scaffold_1 56901792 665 - 233722169 tttttactttatttgcatttattttatatttcatttactcTCAGATCgtaagtttttgtttcttcagttttttctgggatatctttttctttttggtaccaggaatcaaactcaggaccttgtgcttaccaagcaggtacttatggcTCTGAGCACTATCTCCTGCCCTGGGATACTCTTGTGTTTGATGCAACCTCCTCCTATGACCTAGGAACTATTTGTTCCTTTTTCAATAAGGATTATCTCCATGTGGCAGGGGAA-CTCAGGTATTCATTAGTTAGATCACGAGCTC------------AGCGCATCTTGGGTGCTTTGTTTACCTGGATTCGTTCAATGACTAGAG--TCTACTTCTAAACTCTTAAGTTCATCATTAGTCTTTGCATTTCTAAGCTCATGCAGCAAAAATTCAGCACTCTTTTG----------------GGGTCTCAATCCTGTGTCTAGCCCT------CATTTGGCTTAAGCACACCTACCAAGTCCACCACTAAAATGGTGGAATGACACACACTGCTTCTTTCAAGAGTCACCCTTCAGATACTTGGTGGCCTTTTGGATATGCATACCCTTGATGGCCTGGGCAGTTTCACAGAGATTCTTAAAGTGAACACACAGATTTGAGTCTCTTGATTTGCATGGTTTTTGTAAGGTTTTATGGGTCAAGAGAGTAGCAAATC

a score=49422
s chr3            78917167 1295 + 160039680 TTGAAAATGATAC---CATAGGCTCT------CTGCTCCTCCTTGTTCCAGAGACAGCCGCATCTTCTTGTGCAGTACCAGCCTCGTCCCATAGACAAAATGGTGAAGGTCGGTGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCATCTGCAGTGGCAAAGTGGAGGTTGTTGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCCACCCACGACAAATTCAACGGCACAGTCAAGGCCAAGAATGGGAAGCTTGTCATCAACGGGAAGCCCATCACCATCTTCCAGGAGCGAGACCCCACTAACATCAAATGGGGTGAGGCCGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCCGGGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGAACCACGAGAAATATGACAACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAACTGCTTAGCCCCCCTGGCCAAGGTCATCCATGACAACTTTGGCATTGTGGAAGGGCTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCTGGAAAGCTGTGGCGTGATGGTCATGGGGCTGCCCAGAACATCATCCCTGCATCCACTGGTGCTGCCAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCATGGCCTTCCATGTTCCTACCCCCAATGTGTCTGTCGTGGATCTGACGTGCTGCCTGGAGAAACCTGCCAAGTATGATGACACCAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCCACTGAAGGGCATCTTGGGCTACACTGAGGACCAGGTTGTCTCC--TGCGACTTCAACAGCAACTCCCACTCTTCCACCTTCGATGCCGGGGCTGGCATTGCTCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATACGGCTACAGCAACAGGGTGGTAGACCTCATGGCCTACATGGCCTCCAAGGAGTAAGAAACCCTGGACCACCCACCCCAGCAAGGACACTGAGCAAGAGAGAGGCCCTCGGTTGCTGAGGAGTCCCTATCCCAACTCGGCCCC-CAACA--CTGAGCATCTCCCTCACAAT----TTCCATCCCAGACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAATAAAGTTCGCTG---CACCCaaaa
s HiC_scaffold_1 135784239 1251 - 233722169 tcaaaattaatacttGCATgggatctgttttattttttcttctcattttacagacaGCAACATCCTTTCATG----GCCACCTATATACCTGAGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGGGTGCTTGGCTATCCAGTCTGCTTTCAGGACAGGCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAG-------------TCCAGGAGTAAGA-TTTATCAGCATCAAAATGGGTGA-ACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGATACCTGT-TACTTGTGATGGGCCTGAACTACCAGAAGTATGACTGCTATCTCAGGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAACCCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATCA----CCAGGTCATCCTTCTTATACAGAAGAC--TGGATGGCTCTTCTGGAAAACTGTAGCTTGATAGGCATGTGGCTGCCCAG---ATCATCC-----TATGCTGATGCTGCCAAGTCTATGGTCTAGATCACCCCTG-GCTGGATGCCAAGACTACTAGCATATGCTTCTGTGGGCTGCCTACTAGCTTGTCAGTTGTAGGTCTGACATGCTGTCTAGAGAAAGCTGCAGAATATGATGACATCTGTAAGGTGGTGAAACAGGCACTGGAGGGCCC-CTAAATGACAACCT-GGCTAca--gaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGATCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCAGCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAGTA----------GGCCACCAGCCTgagcaaga--aatgaa-aagagagggGCTTTAAGCTGAGGAAGTGT-CTTGCCCAAACTCAGCCCCACAACACTCTGAGACTCTCTCCTCCTGTGGGCTCCCATGCCAGACCTCCTGAAGAAGGGGAAAGA------------TGCTTACTCTGTCATGTACCATCCGTAAAGTCCACTGTGCCACCCAAAA

a score=33532
s chr3            78917196 1314 + 160039680 CTCCTTGTTCCAGAGACAGCCGCATCTTCTTGTGCAGTACCA-GCC-TCGTCCCAT--AGACAAAATGGTGAAGGTCGGTGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCCATCTGCAGTGGCAAAGTGGAGGTTGTTGCCATCAACGACCCCTTCATTGACCTCAACTACATGGTCTACATGTTCCAGTATGACTCCACCCACGACAAATTCAACGGCACAGTCAAGGCCAAGAATGGGAAGCTTGTCATCAACGGGAAGCCCATCACCATCTTCCAGGAGCGAGACCCCACTAACATCAAATGGGGTGAGGCCGGTGCTGAGTATGTCGTGGAGTCTACTGGTGTCTTCACCACCATGGAGAAGGCCCGGGCCCACTTGAAGGGTGGAGCCAAAAGGGTCATCATCTCCGCCCCTTCTGCCGATGCCCCCATGTTTGTGATGGGTGTGAACCACGAGAAATATGACAACTCACTCAAGATTGTCAGCAATGCATCCTGCACCACCAACTGCTTAGCCCCCCTGGCCAAGGTCATCCATGACAACTTTGGCATTGTGGAAGGGCTCATGACCACGGTCCATGCCATCACTGCCACCCAGAAGACTGTGGATGGCCCCTCTG-GAAAGCTGTGGCGTGATGGTCATGGGGCTGCCCAGAACATCATCCCTGCATCCACTG----GTGCTGCCAAGGCTGTGGGCAAGGTCATCCCAGAGCTGAACGGGAAGCTCACTGGCA-TGGCCTTCCATGTTCCTACCCCCAATGTGTCTGTCGTGGATCTGACGTGCTG--------CCTGGAGAAACCTGCCAAGTATGATGACACCAAGAAGGTGGTGAAGCAGGCATCTGAGGGCCCACTGAAGGGCATCTTGGG--------CTACACTGAGGACCAGGTTGTCTCCTGCGACTTCAACAGCAACTCCCACTCTTCCACCT-------------------------------------------------------------------------------------------------------TCGATGCCGGGGCTGGCATTGCTCTCAATGACAACTTTGTCAAGCTCATTTCCTGGTATGACAATGAATACGGCTACAGCAACAGGGTGGTAGACCTCATGGCCTACATGGCCTCCAAGGAGTAAGAAACCCTGGACCACCCACCCCAGCAAGGACACTGAGCAAG--AGAGAGGCCCTCGGTTGCTGAGGAGTCCCTATCCCAACTCGGCCCCCAACA--CTGAGCATCTCCCT--------CACAATTTCCATCCCAGACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAATAAAGTTCGCTGCACCCaaaaaaaaaaaaaaaagaaaagaaaaTGATACCATAGCTTTAagtagtagta
s HiC_scaffold_1 224193781 1348 - 233722169 CTTCTCATTTTGCAGACAGTCACACCTTTTCATGAAGTGCTATGCCATTGCATCATTGAGACAACAATGGGAAGACTGGAGTAA-----TTTAACTGTAATGAGTGCCTAATCACCTTGGCTGACTTTAACTCCAGCAAACTGGATATTATTCTCATCAGTGACCCCTTCATTGACCTCAACTACATGCTACACACATTCCACTATGATTCCATCCAC-ACTCCTTCAATGGCACA-TCAAGGCTAAGAGCAAGAATCTTGTCAACAATGGAAAGCCCATCTCCATCTTCCAAAAGCAAGATTCCATCAACACCAAACTAAGTGATATTGGTGCTGAGATTTTTATAGAATCCATTGTTGTCTTCACTACCTTGGAGAAA---CTAAAGTATATAAATGTTGGA---------------------GCCCCTTCTCCTGA-GAACCCATATTTATGAAGATTGTAATCCATGAGAAGTAAAATAATTACTTTA------------------CCTATACTACTAACAGC-TAACCCACCTAACCAAAGTCTTCCATGAAAACTTCGGCATTGCAGAGGAGCTCATGGTTTTAGTCCATGCTATTACTGCTATCCAGAAAAGTGTAGATGGTTCTTTTGTGAAAAGTATGCCATCATGGCCTTGGGGCTGCCCAGAAGAGCATCCTTCTAATTACAGCCATATACTGTCA---CTGTAAGCAATGTCATTCC-TACAAGAGTGAGAAGCAGTCTGGAACTAACGTTCTGGGTTTCTACTCCCAATATATCAGTCATAGATCTGATCTGGAGAAAGATCTCCTGGAGAAAGCAGCTAAATATGATGACCTTAAGA---TGGTGAACCAGGGCTCAAAGGAATC-CTTAAAAGCATCTTGAAAAAGATTCTTTCACTAAGGACCAGGTTGATTCCTGTGACTTTAACAGTGGTATATGCTCTTCctctttagggaaaaaaaaaaaaataggatagttggtttttgttttttttttttttttttattcaaaagaaCCACTTTGGGAAACTTTatagatagaaaaatagaaaCGTTGGTGAGGGGGCAGGGA--------AATGCCAACTTCATTAGACTCATCTTCAGATATGACAATGAATCTGGCTACACAAA---------------------------GACATCCAAGGATTGGGCCTTCC-GGATCACCAGCTCCAG-GAGAAGgaagagtaagaaagaaagacTGTCTCATGCTATGGA-TCCCTGCTCAACTCTGTCCTTCAACACCCCGAGGATCTCCCCTTTTTTGGCATAGGTTTTACCACAGACTCC--TTACAAAGGATGGGTCTTTTTCATCCATGATTAATC-------TACTTTAAATCTACTTTgctg-agacaagaaaaagaaaaaaaatacagaggaaagTTCTATAGCTGAAAGAGATATTA

a score=114542
s chr3           78965486 1595 + 160039680 tGTAATGACTGTAGTAATCAGTTTATTACACAGATGAATCATTCGTGAACGTACAAGCTCCAGAGGAGCAACAGGGTCTT-AAATATACACACAGATTTCCATCAAATACATCTCCACCCTTACATCGAAATAGGCCTAAAGCAGTTAAAAACATAAGAAAAATAAGAGCTATTAGCTATGTATTAACTGAGAAACCACATACAAACCAAAGATTATGGA----AAGGGGCTAAAAGGAGGAAGGCTGAAAGGGCAGGGAGATGTGAAGTGTTGGGAACAAAGCCCACCACACTTTATGTACTAACAGCTCCAGTCCATTTAAATGTTGATCCGTTAACCTTAGACCTT-AAAGCACAGCATGTAG------TTTAATCTGTTTGGTCATAACTTTCACCTAAGTTGTAGGTCCTTCAGGATGAAATGAATATAGAAACAGCTTCACGTTCTTCACCTTGCTTTTTATGACTGTTTG-AGATTGGATGGACTCCACTTAAGGACAATCTCCTATGGGTCACTGGAGCTTTTCCTCCCATCCAAGCACACACTGTGTACCTACTACCCCTCACATCTTGCCATTATCCAAAGTTAAGTCAATAAGGAAAGCTTTT-AGTCTCACACCTAGGTTATGCCCGGAGAACTGGCTTCTCACACACACACTTCTCTGCTAGGAGGCAATGTTGGTACAGAAGTACAGTATTTCTAGTTTGTTGTT-CCAAGTATGTACAACACGCAGCACTGCTGTGTCAGGTAAACATGTGCACAGGGGAAGATGAGGCGTGGGCTCATAGAAAGCAGTCAAATGGAAATCAAAAGTACTTTCTCTCTCTCAGAGTTCCCCTAGCTTTATTTGTAGAGGTTATCCAATAATTTCTTTAATTACATCGCATACTTCTGAGTCCATTCCCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAGCAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGACAAAAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAAATGCTGCCATTACTGTTAATATTTGGGTGATAAATTCTTGTTGTAAATGCAACCTTAGGCGGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAGGGGCTGTCATTTGGCCCCATTATTGTAGCCTGCCAATGAAACATATCATCTCCAACAGGACCTGCTGAACACTGTGCTGGGGGATCTCGAGCCAGGTCATTCAATTCCTTGTGGATTCTCTTCAGAGCCATGGTGGGAAAC-GGTGGCGACGG-CCCCCggggcgggaacggggacgggggagggacggggaaggggcgagggGGCCTGAGGCCGCCCGAGCGGTCGCGAGTCGACCGGAGAAGACCGGGAGCTCCCGGGAGCGCGGATCA-----GACGAGCTGAGGGCCGAGGCCC--------------CACTCA--GCTTCTGGGCCTGCCGCAGCGGTCACCGCATCACCCGGCGGCGGCCCCTTTATGcgctgctgccacagccgccgccgccgccgtagctgccTCTTCCTCGTACGCTCAGCGCCGCC
s HiC_scaffold_1 51046178 1605 - 233722169 tgtaatgACTGTAGTAATCAGTTTATTACACAGATTAATCATTCTTGAACGTACCAGCTCCAGAGGAGcaattgggtctttaaatataCACAAGTATTTCCATCACATGAATTTC-ACCCTTACATCCAAAGAGACCTAA-GCAgttaaaaacataagaaaaataagagctATTAGCTATGTATTAACTGAGAAACCTCGTACAAACcaaagaatatggagagaaaggGGCTAAAAGGACAAAAGTTCAAGGGGCAGAGAGATATAAAGAGTTGGGAACAAAGCCCATCACACTTTATGTGCTAATAGCTCCAATCCATTTAAATGTTGACCAGTTAAACTTAGACCTTCAAAATACAGGATGTGGGTAGAATTTAATCTGGTTGGTCGTAACTTTCAGCTAAATTGTAGGTCCTTCGGAAT-AAATGAATACAGAAACAGCTTCAtgttcttcactttgcttttcatAACTGTTTGGAGTTTAAACAGATTCCACTTAAAAACA-TCTCCTACAAGTCAGTGGAGCTTCTCC--CCACCCAAGCACACAC-ATGTACCCACCACCCCTCACACCTTGCTGTTATCCAAATTTAAGTCAATATGGAAAGCTTTTTAGTCTCATATCTAGGTTATGTCTGAAGAACTGGCTTGTCACACATACACTTCTCTGCTAGGAGGCAATGTTGGTACAGAAGTACAGTATTTCTAGTTTGTTGTTTCCAAGTATGTACAACACGCAGCACTGCTGTATCAGGTAAACATGTGCACAGTGGAAGATGAGGCGTGGGCTCATAGAAAGCAGTCAAATGGAAATCAAAAGGACTTTCTCTTTC--AGAGTTCCCCTATCTTTATTTGTAGAGGTTTTCcaataatttctttaattacatCGCATACTTCTGAGTCCATTCTCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAGCAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGACAAGAGTACTTTTGAAATAGTTAGTGCTGGAGACCACTGTGACTGAAGAATATCAAGACAAATGTTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGTGGTTTGAAGGGATAATCTGTTGGGGAATGAATTGTCAAGAAAAATACTCCACCCTGATAGGGGCTATCATTTGGCCCCATTATTGTAGCTTGCCAATGGAACATATCATCTCCAACAGGACCTGCTGAACACTGTGCTGGTGGGTCCCGTGCCAGATCATTCAATTCCTTGTGGATCCTTTTCAGAGCCATGGCGGGAGGCGGGTGGCGGCGGCCCCCCGGGGTGGGGAGGGGGGC-GGGGAGGGACGGGGAAGGGACCAGGGGGCCTAAGACCGCCTCGGCGGTAGCGGGTC---------AGATGGTAAGTT--CGGGAGCGCAGGTTAGGCAGGACGGGCTGAGAGCCAGGGCCCGCACAGCTTCCGGGCCCTCAAGGCTTCTGGGCCTGCCGCAGCGCTCACCGCATCACCCGGCGGCGGCTCCTTTATACGCTGCCACCCCAGCCTTCGCCGCCGCTGCCGCTGGCGCCCCCGC-------CACCACCGCC

a score=26058
s chr3            78966037 765 + 160039680 CCCCTCACATCTTGCCATTATCCAAAGTTAAGTCAATAAGGAAAGCTTTTAGTCTCACACCTAGGTTATGCCCGGAGAACTGGCTTC-TCACACACACACTTCTCTGCTAGGA------------------GGCAA-TGTTGGTACAGAAGTACAGTATTTCTAGTTTGTTGTTCCAAGTATGTACAACACGCAGCACT---GCTGTGTCAGGTAAACATGTGCAC----AGGGGAAGATGA---------------------GGCGTGGGCTCATAGA-AAGCAGTCAAAT--GGAAATCAAAA---GTACTTTCTCTCTCTCAGAGTTCCCCTAGCTTTA------TTTGTAGAGGTTATCCAATAATTTCTTTAATTACATCGCATACT--------TCTGAGTCCATTCCCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAGCAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGACAAAAGTACTTTTGAAATAGTT-AGTGCTGGAGACCACTGTGACCGTAGAATATCAAGACAAATGCTGCCATTACTGTTAATATTTGGGTGATAAATTCTTGTTGTAAATGCAACCTTAGGCGGTTTGAAGGGGTAATCTGTTGGGAAATGAATTGTCAAGAAAAATACTCCACCCTGATAGGGGCTGTCATTTGGCCCCATTATTGTAGCCTGCCAATGAAACATATCATCTCCAACAGGACCTGCTGAACACTGTGCTGGGGGATCTCGAGCCAGGTCATTCAATTCCTTGTGGATTCTCTTCAGAGCCATGGT
s HiC_scaffold_1 112505202 814 - 233722169 CCCCTCAGATGGTTTCTTCAGC---AGTTAGAGCTGTGAAGGATG-GTTTGGTCTCATAACCAAGTTAGGGTAAAAAGAATGGCCACATAATACACatgctccatttttaaaaaaataatttggaatctTGGGCAACTGTTCTTTTGTAAGTACAGTTTCTAAAAGCTGTT------ACTGTCCAAAGCTGGAAGAATTTAAGTCTTCTCAGATGAGCATGTGTATGAATAGAGGGaggtaaacaaaaaataaaattaaaaaagatgagGTCTGATAGGTGAGCAGCCAGATAAGAAAATCAAAAAGGGAACAGTAACT---TGAAGTTTATTCCAGCTATAATACAGTTTATTCCGATTGTAAGATAGC-------ATGACATAGCATGCTATTATGGGCATGAGCCCATTCTCGAGATATTCTATTGTTCTTGTCTCTGTCTGTTTTATAGATTCATGCAGTCTCTGGCACTAGGAGGTCAACTGGATTTGGATCACATAGCAATGAACAAATGGATAAAAGAACTTTAGAAATAGTTAAAAGCAGGAGACCACTGTGATCTTAGAATATTGACACAAATGCTGTCACTACTGTTAATATTTGGTTGATAAATTCTTGTTGTAAATGCATCTTGTGGTGGTTTGAAGAGGTTGTCTGTAggaaaatgaattattaaaaagaatacaCTACCCTGATATGGGCCATCATTAGATCCCATAATTGCACCTTGCCCATAAAACATGTCATCCCCAACTGGGCCTGGAGAACATGGTGTTGGAGGGTCATGAGCCAAATCACTAAGCTCCTTATTAATCCACTTTAGTGCCATGGT

a score=5281
s chr3           79066567 165 + 160039680 CCTACCGTCCTCCTCCGCTCCTGC-GAAGCCCTGCGGCTGGAAGGGCGCGAGGCGTGGGTCTGCGTCGCTGGGCTTGTGCCACTGTGGCTTGCTGCCCGGCCGGCTGGCTGCGGCTGCAGGCGGCGTCTGGCCCGGTGCCGGGGCCTCAGTGGGCCGTGCCACCAT
s HiC_scaffold_1 91508375 132 - 233722169 CCTACCATCTTCCTCC----TTGCAGAAGCCCTGATCCTGGCAGGGGGCCAGATGGGGATCAGCCTCACTGGGCTTGTGCCACTGTGGTCTGCCGCCCGGT------------------------------GCCAAGGATGAGACCTCCGCGGGCCGCACCACCAT

a score=7989
s chr3            79295105 569 + 160039680 aaaagaaaaagaaagaaaaggaaaAGTGAACAAAACAGAA-AGGCCATAAAAGTATGTTCAGCTCAGCTTTTGGCTGGAGCTGCTGTCTTCCAA-AGTTGGTCAAAATGACAAACCATAAAGTGAAAGGGGCAAGACAGCAGATGCATAGTCTCTAAGTCTTTTAGAAAC-CATGGGGTT----CTTAGACCTACGTACATATGA--------------TAGAGTAAATGTCATGAGAATGAGTTCTGTTGCATAATTTTTTTAAAG----CCCATCATCACGACAAAAGTGTAAGATTCCAGCGTCACTCAGCATGCTGCTGGCACTGTTGTAGACAAGCAAATCCAGAACAAAGTTCTTCCCCGACAAGTAATGTCCAGACCCACGCGTGCTAAACGCCAAAAGAGTTGGGGTGACTTCTGAAGCAAGTGATGGAAAACAGTATGAGGAAGAAAAAGAAGTCACACATAAAGAGAGCCTGCCTGGGTTTAACCTAAAGTCCAGCCTATCCTCCCCAGAAGCAAGCTGTGAGAAACACGAACAGGAAGCTCATCTGCTAGAGCCTAGTCCCTGTGAATTTGAGGCTTAATAAA
s HiC_scaffold_1 201300623 521 - 233722169 agaaggaaaaaagagaacaggaTTAGGAAAAGGAATACAGGAGTTTTTACAAGTA-GTACAGTAGTGCTTTTGGTTAGAATTTCTCTCTTCTACTAATTTGCAgaaatga-------------gaaagggaaaaaaccTGAGGTGTA----CTTTaggccttttaaaaaaacatgggGTTGTTCCTTTGGCC-ACGTATATGTGAATCTACAAAAAGGATGGGATTGTAGACAAGGGAGTGGGTACTGTC-CATAAGAATGCCAGAGATGTCCCATGGTCAGATTGGAAGAGCAT--TTACAGCGTCACCCAGCATGCTGTTGACATTGCTATAAGCAAGCAAGTTAAGAACAAGATCTTGCCAAGAGCATTCATGTGCACACTGA-GCATATTAAGCACTCTCAGAGCGCAGATCACTTCC-----------TGAAATGCATCAaga-----aaaaagatgacaaaaagaaagaaa---tgcc-------agCCTGCAGCCCAG------------AGAAATACATCTTG-GAAGAACCAATGGGAAG-----GAGCTGGAGAC---TCCCTATGAATTCAAGG---AATAAA

a score=11845
s chr3            79295133 537 + 160039680 AACAAAACAGAAAGGCCATAAAAGTATGTTCAGCTCAGCTTTTGGCTGGAGCTGCTGTCTTCCAA-AGTTGGTCAAAATGACAAACCATAAAGTGAAAGGGGCAAGACAGCAGATGCATAGTCTCTAAGTCTTTTAGAAACCATGGGG----TTCTTAGACCTACGTACATATGA---TAGAGTAAATGT--------------CATGAGAATGAGTTCTGTTGCATAATTTTTTTAAAGCC-------CATCATCACGACAAAAGT-GTAAGATTC--CAGCGTCACTCAGCATGCTGCTGGCACTGTTGTAGACAAGCAAATCCAGAACAAAGTTCTT-CCCCGACAAGTAATGTCCAGACCCACGCGTGCTAAACGCCAAAAGAGTTGGGGTGACTT-CTGAAGCAAGTGATGGAAAACAGTATGAGGAAGAAAAAGAAGTCACACATAAAGAGAGCCTGCCTGGGTTTAACCTAAAGTCCAGCCTATCCTCCCC--AGAAGCAAGCTGTGAGAAACACGAACAGGAAG-----CTCATCTGCTAGAGCCTAGTCCCTGTGAATTTGAGGCTTAA
s HiC_scaffold_1 152995871 553 - 233722169 AAAGAAACAGTCTTGCTGTAAACATACATT------AACTTTCAGCCAGAACTGCCATCTTCCAATAATTTGCCAAAATGATGAAC-ATGAAGGGACAGAGGAGGGGAACCTGATATATGTTCTCTAGGCCTTTTAGAAAACATAGGATTGTTTCTTGG--CTACATACATGTGAATCTACAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTG-TGCAAAA----AGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACT--ATATGCTGTTGATATTGTTGTAAACAAGAAACTTAAGGGCAAGATTCTTGCCAAGAGGATTAATATACGTA-TTGGGCACATTAAACATTCAAAGAGTCATGATAGCTTCCTGAAACATGTCAAGGAAAATG--ATCggaaaaagaaggaagccaaagagaaaag-----TACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTG-AACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=12383
s chr3           79295170 500 + 160039680 GCTTTTGGCTGGAGCTGCTGTCTTCCAA-AGTTGGTCAAAATGACAAACCATAAAGTGAAAGGGGCAAGACAGCAGATGCATAGTCTCTAAGTCTTTTAGAAACCATGGGGTTCTTAGAC---CTACGTACATA-----------------TGATAGAGTAAATGTCATGAGAATGAGTTCTGTTGCATAATTTTTTTAAAGCC-------CATCATCACGACAAAA----GTGTAAGATTC--CAGCGTCACTCAGCATGCTGCTGGCACTGTTGTAGACAAGCAAATCCAGAACAAAGTTCTT-CCCCGACAAGTAATGTCCAGACCCACGCGTGCTAAACGCCAAAAGAGTTGGGGT-GACTTCTGAAGCAAGTGATGGAAAACAGTATGAGGAAGAAAAAGAAGTCACACATAAAGAGAGCCTGCCTGGGTTTAACCTAAAGTCCAGCCTATCCTCCCC--AGAAGCAAGC--TGTGAGAAACACGAACAGGAAGCTC-ATCTGCTAGAGCCTAGTCCCTGTGAATTTGAGGCTTAA
s HiC_scaffold_1 55447185 527 - 233722169 gcttttggCCAGAACCATCATCTTCCAGTAATTTGCCAAAATGATGAAC-ACAAAGGTAAAGAGGTGGGGATCCCAATATATATTCCCTATGTCTTTCAGAAAACATGGGGTTGCTCCATTGGccacatacatacaaatatacaaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGG-----AATGCCACACAAATGTTATCATGGCAAAACATCATGAAAGAGTCTACAGTGTGACCCAGCATGCTGTTGGCATTGTTGTAAACAAGCAAGTTAAGGGCAAGATACTTGCCAAGAAGATTAATGTGCATATTGA-GCATATTAAACACTCAAAAAGTCACAACAGATTCCTGAAATGTCCCAAGGAAAAtggtc--agaaaaagaaagaagccaa----agagaaaggCT-CCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAA

a score=4728
s chr3           79462573 95 + 160039680 ATACTCCTCCTTATGTGCAACAAAACCC-TACTGAGCAGTGAGTTCTGGGTTGCAAAAATGGATTTA-TTTTTGTACTCGTTT-TTATGTCTTTATTC
s HiC_scaffold_1 29104532 98 - 233722169 ATATTCCTTCTTATATGTATCAAAACTCATACTGAACAATGAGTTCTGGGTTGCAAAAGAGGTTTTATTTTTTGCACCTGTTCAGTAAGTTTTTAGTC

a score=4022
s chr3            79561062 201 + 160039680 aataaataaataaatGTACTTACatataa-taaataaataaatctttaaaaaattaaaaaaaaaaaaaGAAAGGGCACATTACATACATGTATGGAAATGTCATAAAGAAACCCATGGTTTTAAGTAAAGCATGTTACATACATGTATGAAAATGCCAGAATGAAACCCACTGCTTCATATAATTAACATAAACCAGTAAAA
s HiC_scaffold_1 131431246 179 - 233722169 aacaaagagaaagatg-----aCATATAAGCAGATGAGAGACTATTAGACAAAAAGAAGAGGATGAAGGAAAAGGCG--------------ATGGTGG-GTAATGGGGGAG---GTGGATATGATCAAAGTATGTTACATGTATGTGCAAATATGTCAAATTGAAACCTATTATTCTGTATTACTAATATGAACTAATGAAA

a score=4221
s chr3            79561182 143 + 160039680 TAAGTAAAGCATGTTACATACATGTATGAAAATGCCAGAATGAAACCCACTGCTTCATATAATTAACATAAACCAGTAAAAAATTTTAAACATGATCAAAAGCCAC--------TGAAATATGTAACATGTCAGACCCCTGTTCTATGGAA
s HiC_scaffold_1 193271678 143 - 233722169 TGATTAAAGCATGTTAAATACAAGTATGAAAAAGTCACAACGAAACTCAACGTTCTGTGTATTTAACATCCtttaataaaaag----gaatataAGAGAAAGCTACAAGCATAATGGATTGTTT----TTTCAAATTCCAGTGCCATGGAA

a score=4422
s chr3            79561182 88 + 160039680 TAAGTAAAGCATGTTACATACATGTATGAAAATGCCAGAATGAAACCCACTGCTTCATATAATTAACATAAACCAGTAAAAA---ATTTTA
s HiC_scaffold_1 192217963 91 - 233722169 TAACCAAAGTATGTTATGTACCTGTGGCAATATGCCAGGATGAAACTCACTATTTTGTATCACTAATATAAActaatagaaatgtatttta

a score=4639
s chr3            79561184 87 + 160039680 AGTAAAGCATGTTACATACATGTATGAAAATGCCAGAATGAAACCCACTGCTTCATATAATTAACATAAACCAGTAAAAAATTTTAA
s HiC_scaffold_1 128294345 87 - 233722169 AACAAAGTATGTTATACACATGTATGAAAATGCCACATTTAAACCCATTATTCTGTATACTTAATATGTACcaatttaaaattgtaa

a score=26040
s chr3           79582406 854 + 160039680 ctcagaaaaCCTTTTTTAAAAAACCTAGAAAGAATCTCTCTCTTCTTTT---GGAAAACACGAAATGGATGTTGATGCTGG-ATGGTGGGAGGACTT--------------------AGAGTGTC------TTAGGGCTCAAGCTTAGGAG---GACACT---------GATCCCA-------------TAGAGGTAAAGCCAAAGA-------CCAGGCACCAAGCTGGGCCACATAGCTA--CAAAAACATGAAAA------TGGAAGAGATCT---GCTTGTTCTTGCTCATTAAGGAATCT-GATATCATTGGCTTTTCCCTGGCTTTTGCATCTCTAAAGGATGAGGTGCTAAAGGCCATGCCAGTACAGATGCAGACTCAGTCTGTCCAGAGGACCAGGTTCAAGGGTTTTGTCGCTATTGGGGACTA-ACGGGTCATGCTGGTCTTGGTGTTAAGTTCTCCAAGTAGGTAGACGCTGCCATCCGAGGGGCCATCATCTTGGTGGGTCAAGCTTGTCATCGCCCCTGTGCAGAAAGGCTGCTGGAGG-----GATAAACCCCATACTGTCCCATGCAAGGTGACAGGCTGCTGTGGCT--GTCCTGGTGCATCTCACCCCTGCACCCAGAGGCACTGGCATCTGTCTCTGCCCCTGTGCCCAAGAAGCTGCGGCGGCTGGCCAGTACTGATGACTGCTACTCATTAGCCAAGGGCTGCACTGACACCCTGGGCAACATTGCCAAGGCCACCTTTGATGCCATCTCCAAGACATACAACTACCTGA--CCTGACCTCTGGAAAGGGACTGTGTTCACCAAGTCTCCTTATCAGGAATTCCCTAACCATCTGTGAAATCCCATACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTTGATACCGTGAAAGGATTTTTATACAAGAAAAA
s HiC_scaffold_1 55542912 870 - 233722169 CTCAGAAGTCTTtt--------gcttaaaatgtttttctttcctttttcttcaaaatacgcCAAATGGCGGATGATGCTGGTACAGCAGGAGGGCTTGGGGGCCTGGCGTTGAGAATAGAGAGTCCAGGCATGAGGGGCCAAAATGGAGAGTCAGACAGTTCTCTTGGAGACTTCAGGGGCATGATGGCTAGGGGTGAGGACAAGGAGTGAATCCCTGTTCCTGAGCTGAGCTGGCTGGCTGGCCAAGGACATGATCACCTCTCTGGAGGAAATTTCTGTCTTCTCCCTATCCATCAGGGGGTCTTGAGATGACTGACTTTTTCCTGG---GTACGTTTCTAACAG-TGAAGTTCTAAAAATCATGCCCTTGCAGAAGCAAACTGGTGCTGACCTACAGATGAGGTTCAAGGCATTTGTCACTATTGGGAACTACAATGGTCAAGTTTATCTGGTTGAAAAGTGCTCCTAGGAGATAGCCACTATCACCTGAGGGGTCATCATCCTGGC----CAAGCTCTCAGTTGTTCCTGTGAAGAAAGGCTAATGTGGGAACAAGACAAAGCCCACATTGTCCCTTGCAAGGTGACAGGCTGCTGTGGCTCAGTGTTGATGTGGCTGATCC-TGCCCCCAGGAGCACAGGCATTGTGCTTGTGCCCTGTGCCCaggaagctgctgctgctggc----------------------------aggGGCTGCACTGCCACTTTGGGCAACTTCACCAAGGCCACCTTGGGTGCCATCTCCAAGACCTACAGTTACCTGATCCCTGACCTCTGGAAAGAGACTATGTTCACCAAGTCTCCTTACCAGGAATTCACTGACcatcttgtaaa----------------------aaaaaaaacaagctccAACAGTATCT-CCAACATAGGGTTTTTACACAAGAAAAA

a score=32497
s chr3            79582424 844 + 160039680 AAAAACCTAGAAAGAATCTCTCTCTTCTTTTGGAAAACACGAAATGGATGTTGATGCTGG-ATGGTGGGAGGACTTAGAGTGTCT-TAGGGCTCAAGCTTAGGAGGACAC------------------------------------------TGATCCCATAGAGGTAAAGCCAAAGACCAGG-------------CACCAAGCTGGGCCACATAGCTACAAAAACATGAAAAT---------GGAAGAGA---TCTGCTTGTTCTTGCTCATTAAGGAATCTGATATCATTGGCTTTTCCCTGGCTTTTGCATCTCTAAAGGATGAGGTGCTAAAGGCCATGCCAGTACAGATGCAGACTCAGTCTGTCCAGAGGACCAGGTTCAAGGGTTTTGTCGCTATTGGGGACTA-ACGGGTCATGCTGGTCTTGGTGTTAAGTTCTCCAAGTAGGTAGACGCTGCCATCCGAGGGGCCATCATCTTGGTGGGTCAAGCTTGTCATCGCCCCTGTGCAGAAAGGCTGCTGGAGG---------GATAAACCCCATACTGTCCCATGCAAGGTGACAGGCTGCTGTGGCTGT-CCTGGTGCATCTCACCCCTGCACCCAGAGGCACTGGCATCTGTCTCTGCCCCTGTGCCCAAGAAGCTGCGGCGGCTGGCCAGTACTGATGACTGCTACTCATTAGCCAAGGGCTGCACTGACACCCTGGGCAACATTGCCAAGGCCACCTTTGATGCCATCTCCAAGACATACAACTACCTGA------CCTGACCTCTGGAAAGGGACTGTGTTCACCAAGTCTCCTTATCAGGAATTCCCTAACCATC-TGTGAAATCCCATACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTTGATACCGTGAAAGGATTTTTATACAAGAAAAACAAAGTAA
s HiC_scaffold_1 210115251 913 - 233722169 aaaaattta--aagagtct---TCTTCCTTGAGGAAACACCAGATGGAGGATGACGCCATTGCAGCAGTAGGACCGGGAGGTTCCAGGGGGCCCATGCATGGGAGGCCGCAGTGGCTTCTGTGGAGGCTTCTGAAGTGGCCTTCGAGGCCGTGGAGCTTGTGGTGGTAAGGCCGAGGACAAGGAGTGGATTTCTGTCATCAAGCTGCACTGACTGGT--CAAGGACATGAAGATCAAGTCCCTGGAGGAAAGTTTTCTCTTCTCCCTACTCATCAAGGAGTCTGACACTATTGACGTTTTCCTGG---GTGCATCCCTCAAAGATGAAGTCCTGAAGATCATGCCTGTGCAGAACCAAACTCGTGCTGGCCAGGGGACCAGACTCAAGGCATTTGTCGTCCCTGGGGAATACAAAAGTCACGTGGCTCTGGATTTAAAGTGTTCTAAGGAGGTAGCCACTGCCATTCGGGGGGCCATCATCCT----GGACAAACTCTCCATTGCTCCTGAGAGGAGAGGCCACTGGGGAAACAAGATTGACAAGCCCCACACAGTCCCTTGCCAGCTGCCAGGCCGCTGTGACTCTGTGTGGTGTGTCTGATCCCCGAACCCAAAGGCACTGGGGT-TGTCTCAGGCCTTATGCCCAAAGTGATGCTGCTCATAGCTGGTATTGATGACTGCTACACCTTTGCCTGGGACTGTACTGCTACTTTGGGCAATTTTGCTAAGG-CACCTTTGATGCCATCTCTAAGACCTACAGTTACCTACATGACTCCTGACCTCTAGAAAGAGACTGTGTTCACAAAGTCTCCCTACCAGGAATTCACTGACTGTCTTGTGAAAACCCACACT--AGTCTCTGATCAAAGGACTCAAGCTCCAGCGGTAGGTACAACATAAGGGTTtttacacaagaaaaataaaatga

a score=32902
s chr3            79582524 740 + 160039680 GAGGACACTGATCCCATAGAGGTAAAGCCAAAGACCAGG-------------CACCAAGCTGGGCCACATAGCTACAAAAACATGAAAAT---------GGAAGAGATCT-GCTTGTTCTTGCTCATTAAGGAATCTGATATCATTGGCTTTTCCCTGGCTTTTGCATCTCTAAAGGATGAGGTGCTAAAGGCCATGCCAGTACAGATGCAGACTCAGTCTGTCCAGAGGACCAGGTTCAAGGGTTTTGTCGCTATTGGGGACTA-ACGGGTCATGCTGGTCTTGGTGTTAAGTTCTCCAAGTAGGTAGACGCTGCCATCCGAGGGGCCATCATCTTGGTGGGTCAAGCTTGTCATCGCCCCTGTGCAGAAAGGCTGCTGGAGG---------GATAAACCCCATACTGTCCCATGCAAGGTGACAGGCTGCTGTGGCTGTCCTGGTGCATCTCACCCCTGCACCCAGAGGCACTGGCATCTGTCTCTGCCCCTGTGCCCAAGAAGCTGCGGCGGCTGGCCAGTACTGATGACTGCTACTCATTAGCCAAGGGCTGCACTGACACCCTGGGCAACATTGCCAAGGCCACCTTTGATGCCATCTCCAAGACATACAACTACCTGA--CCTGACCTCTGGAAAGGGACTGTGTTCACCAAGTCTCCTTATCAGGAATTCCCTAACCATC-TGTGAAATCCCATACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTTGATACCGTGAAAGGATTTTTATACAAGAAAAACAAA
s HiC_scaffold_1 232171439 725 - 233722169 GAGGCCACGGAGCTCGTGGCGGTAAGGCCAAGGACACGGAGTAGATTCCTGTCACCAAGCTGAGCTGGCTAGT--CAAGGGCATGAAGATCAAGTCCCTGGAAGCCATCCAGGGACTCCTTAGCCATCAAAGAGTCTGAGATTATTGACTTTTCCTGGGC----GCATCCCTAAAGGATGAAGTCTTAAAGATCATGCCTGTACATAAGCAAACTCGTGCTGGTCAGTGGGCCAGGTGCAAGGCATTTGTCGCCACTGGGGACCACAACGGTCACATTGGTCTGGGTGT------------------AGCCACTGCCATTCGCGGGGCCATCATCCTGGC----CAAGGTTTCCATTGCTCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAACCCCACATAGTCCCTTGCAAGGTGACAG-------------------TGCGTCTGATCCCTGCCCCGGGAGGCACTGGCAT-TGTCTCAGCCC-TGTGCC-AAGAAGCTGCTGCTGATGGCTGGTACTGATGACTGCTACAC-CTGGCCAGAGGCTGTACTGCTACTCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACCTACAGCTACCTGACCCCTGACCTCTGGAAAGAGACTGTGTTCACAAAGTCTCCCTACCAAGAATTCACCCACCATCTTGAAAAAACTCACACTAGAGTCTCCATCCAAAGGATTCAAGCTCCAACAGTAGCTACAACATAAGGGTTTTtacacaaggaaaataaa

a score=4276
s chr3           79641613 119 + 160039680 ATATACATAATGAAACTTTATTCAGCCACCGAGCAGGGGGAAAAAAAGACATTTTCAGGAAGATTCATGTAACTGGAGATTTCAATGTTAAAAAATAggatgcaaaataaacacaaaaa
s HiC_scaffold_1 24572115 114 - 233722169 ATGTGCACAATGGAACATTATTCAGCCACACAGAAGAACGAAATCGTGACATTTGCAGGAAGATGGGTAGATCTTGAGCACATAATGTTAA-----AGGAAGCACATcaaacacagaaa

a score=8243
s chr3           80368181 176 + 160039680 TCCTCCCACACTGTGCTACTTGAATTTGATTTGATTTG-----ATGTGTCTTAGGCATAAAACAGCTTGGGCCACCAAGCCAGGCATCAAGCTAGGATGAACAAAGGACTGCCATCTGCTCTGTCCCTGACTAATATAAAATCACCACCAATGACAAAATGTC-ATTTGCCCATTGCCAGAG
s HiC_scaffold_1 37912058 181 - 233722169 tcctccctttttgctcttattgcctttttttttttttttcatcatgtgTCCTAAACATGAAACAGCTCTGGCCACCAAAC-AGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGG

a score=37526
s chr3            80398661 1007 + 160039680 TTTTGTTAGAACAAC--AGCAAAATAAAACTCCAGTTT-TTATTGTTGTACATTGTTTTAGACATACATCAAACAGGC---------------AAAAAAAAAAAAATTAAA----------------------------------CAGCAACTTCCTAGACAAAAAAAAAAGAAAGGA-----------TTTTTTTTGTTG-CCTTTTTAATCATCTCATACAAACCAACTACTTATAGTACAGCTAGGTACATACACACAAAAAAGTTACTGGAATGCTCTGAATAAGATT-TTTTGTTTTTGTTATTGTTTTGTTTTTTTACAAG--TTTTTTTTTCCTTTCAGATTATAATAAACATGCTCACACAAGTAAAGTC---TGAAGTAGGACAGAAGACGCTCTGAAGGCTGGTTTGGTCACCAGTTATCGTTAAAAATGGTTGACCCCCAACAATATGTGC-AATAATATAAAATGCTAATAAAAA-ATACAAATTTTCCTTT-TAAAGTATTTTTAAG-AAAACAAGCAGGGCCTGGGAAGTTCTGGTTCTTTTTTTCCTCCCATGTTGTCAATTCGTGTTGTGGTTTAGGTGGGCTGGTGGAGAGCGCATGCCATCTGTGGGTAGCACTGCCCGCTGTGGGCGAG------------------------CGGGGCCTGCTTCT-CTACTCGAAGGTGACTACGTTTAAATTCTGAGATGGGAAGAGGAGGGTGAATAGGTCACGGT-GCATAAGGTTAGCTTTTCCT-TTTGCTGTCTAGCCGTCCTCATCCTCGTCAGTATTCTGCTTCTTGGTGTCGACATCATCTTCCTCATCATCCTCAGCTACCCGTTTGCCCGTAGGAGCCTCAGCTTCCTCACCTTCATCTCTATTCTCTTCCTCACCATCACCTtcctcctcctcctcctcctcctcttcctccccaccttcttcctcttcttcAGCTACCTCATTTTCAGCCTCCTGCTCCCCATTTTCCTCATTTTGACTGTTCCCATAGGCAGGTGCATCTCTTCCATTCTCTGTTTCCTCCACAACTTCTGTCTTCTCCTTCAAGTCCTCGGTGGTGATGCGCGCGCGCGTGT
s HiC_scaffold_1 127512080 1036 - 233722169 tttttttagaacacctcagcaaaataaaattctggTTTGTTGTTGGACAACACTGTTTCACACATACATCAAACaggccaaaacagaaaaaaaaaaaaaaaaaaaatcaaagtaaaacaaaacaaccaaaaaaccaaaaaaccaacagcaacttcatagattaaaaaaaaaaaaaggaaaaaaagaaatcttttctcgTTGGCCTTTTTAACCATCTCATGCAAACCAATTACTCATAGTACGGCTAAGTACATACACA-AAAAAAGTTACTGGAATGCTCAGAataagattgttttgtttttgc----------tttttaaacaaggttttctttctcctttgaggTTGTAGTGAACACGGTCACACTGGTCACACCACTGGAAGGAGGACAGAGAAGGCTGCGAAGGCCGGTTGGGTCATCC-TCATCATCAAAACCGGCTGACCCCAACCAATATgtacaaaaaatataaagtgtaaataaaaacaaacaaatattccTTTCTaaagtacttttaagaaaaaaaagcagggcctTGGAAGTTGTGGTTGTTTTTTCCTCCC--TGTTGCAAATTCTCCTGGAGGGCTCCCCGGG-TGGTGCAGAGTG-GTGTCCTCGGCAGGGGTCGCTGTCCGTGGAGGGCGGGGTGGGGGCGGGGTGGAGGGGGGGCGGGGGCGGGCCTCTCCCAAGTGAAGGTGACCAGGTTTAGAGCCT-AGATGGGAAGTGGAGACTGAATAGGTCACGGTggcctttttataatttttcctgtttgcTGTCTAGTCATCCT-------GCCAATCTTCTGCTTCTTGGTGTCCACCTGGTCATCCTTATTATCTTCAGCTTCCCGGTTGCTCGtagctgcctctgcctcctc---------------ctcctcctcttcatctctgttctcctcc---------------tcctccctggcttcctcctcctcctcctctacctca-TTGCAGGCCCTCATTTGCCATTCTCCTCGCTC---CTGTTCCCGTTGACGGGTG--TCGCGCCCATTCTCCGCCTCCTCCAC------------CATCTTCAGGTCCTCGGTGGTGATCTGGGAGCTGGTGT

a score=23069
s chr3            81404701  881 + 160039680 ttatttcattttgatttttaag-----------tcttaaatacactttacTGGtattatatataata-------------ttatatataatCCACACTAAA-TGCCTTTCAGTA-GTTGAAGGTAGCATTCCAT-GCCATAGGGAATTCTAATTAAGTTGGCA--------ACCTGAGGAATAGACAGTTTCCTCCTGCTAGCTAAATATGCTGTA----CAGACCAGTGACAGTAACTGAAACACAGAA-------TTGGTTCTGGGTCATCAGTGATAAA--ATTTGCCCAGTATCTAAACATATTAATATGTCCTGTTATATAAATCCAAGAATAAAACA---TGTCAACAGGTTCCAAGGTATCAGCATCA-TTTTTGTGGAAAGTGGACCACTTCTAA----GTTGAATCCTCTCTTGAGGAAGGGAGAACAGTGACAGAATTTATCCAGCTGGAGTTGCTATTTTCAAAA--TCATATCCACCTTACTACAAGTCAGTTTTACTTAAACCAGGACTGTCCAACAAGAAAACACTGTTAGTCGTTCATGATCTGAATCCTGGTGTATGAG-----TTAAATTGGAGTGTACAAAAATTATG-------------AGACTTT--------------------------------------TTTTAAGTCTCAT---------------------------------------------TTTTTAAATAAATAAGGCAGTAGAT-TTATTTGTTAGTAGCCTTTTAAAGATAAGTTTTAGGTCTGTCTTTTCTCCCCTCTT---AACTCCAGTGCAGATCA--------------------------GATTCTCCAAATACACCATCAGGGTGTCCTCGCCCCACCTGATGCCTTTGTTCTTATTGGCATCT-TGAAAGATAATCCAGTGGCCTGACCTTTATTC-TGCAGAAACAGATCATGGAGATTTAGTCCAGTCTTATGGTTGCTCCCCTATTCTACAGTGTGGCACTGCACACACTTCTGAATAAAAATCTTGCCTTTGACAACATCACCCACTTTTAATTCT
s HiC_scaffold_1 207105616 1041 - 233722169 TTATATCATGCTAACTTTTAAAAGGATCTCAACTTATAAATCAACtataa-aatgtgataaatattaaatgttcATGTGGTTATACATACACCACATTAAAATGCCTTTCAGTAAGTAAAAGGAAGCACTTTTTAGATACAGTGAATTCTAATTAAATTGGCATAGTCAAGACCAAAAATATAGACA--TTGCTCCTTGTCTTCAGCCACTCCATGGAAGAAGCtaagaaacacaaattgaaaCACGGGTGTCTTGTTTGGTTTTGAG------ATAATGAAGGATTTTCCCAGTTTTTAACCA--------------ATTACATAAATCTAAATATAAAGCCAACTTTCAGTAGATTTTGAGATGACATTCTCAATCTTTGTGAAAAGTCAAACGTTACTAATCAAGTCCAATCATGTATTTAGAAAGGGAAAACAGTGATAGTATTTATTGAATTGGAATTAGCAT---CAAAACTTGATGCTAATTTAGCTACATGCCAATCTTACTTAAATCAggactatccaacaaaaacattcTGTCAACCACTCATGATCTGAAGTCTGGTATATGAGATCTATTAAATTATGGCACACATAAAAAAGGCCAAGAGagggccagggtttagctcaggggcctaagcacctgcctagcaaaagtgaggtcttgagttcaatccccagtaccaaaaagaaaaaaaaaaaagccaagagacatttctgttctgtaataaATAAGGCAGTGACTATTACTCATTAATAGCTTTTTAAGG-TAAGCTTTAAGTGtgccctttctcccttctttttgaTGCCAGCAAAGATCATTTTTGTTCCAGGGTTTATTTCTTGGGATTCTCCAAACACACCATCAATGTATCCTCTGCCCAGGTGATGCCTTTGCTCTTGTTGGCATCTGTGTAAGAGAATCCAGCAGCctgacctaacttcctccccCAACAGACCATGGAGTTTGGGCCCTAGATCGTGTTTGCCTCCCTTCTCAGCGGTGTGGCACTGGGCACACTTCTGTACAAAAATCTTGTCT----CAGCATTACCCATTTTTAAACCT

a score=23104
s chr3            81404720 862 + 160039680 aagtcttaaatacactttacTGGtattatatataatattatatataatCCACACTA-AATGCCTTTCAGTA-GTTGAAGGTAGCATTCCAT-GCCATAGGGAATTCTAATTAAGTTGGCA--------ACCTGAGGAATAGACAGTTTCCTCCTGCTAGCTAAATATGC------TGTA-CAGACCAGTGACAGTAACTGAAACACAGAATTGGTTCTGGGTCAT-CAGTGATAAA--ATTTGCCCAGTATCTAAACATATTAATATGTCCTGTTATATAAATCCAAGAATAAAACA---TGTCAACAGGTTCCAAGGTATCAGCATCA-TTTTTGTGGAAAGTGGACCACTTCTAA----GTTGAATCCTCTCTTGAGGAAGGGAGAACAGTGACAGAATTTATCCAGCTGGAGTTGCTATT-----TTCAAAATCATATCCACCTTACTACAAGTCAGTTTTACTTAAACCAGGACTGTCCAACAAGAAAACACTGTTAGTCGTTCATGATCTGAATCCTGGTGTATGAGTT-----AAATTGGAGTGTACA----AAAATTATGAGACTTTTTTTAAGTCTCATTTTTTAAATAAATAAGGCAGTAGAT-TTATTTGTTAGTAGCCTTTTAAAGATA-AGTTTTAGGTCTGTCTTTTCTCCCCTCTT---AACTCCAGTGCAGATCA---------------------------GATTCTCCAAATACACCATCAGGGTGTCCTCGCCCCACCTGATGCCTTTGTTCTTATTGGCATCTTGAAAGATAATCCAGTGGCCTGACCTTTATTCTGCAGAAACAGATCATGGAGATTTAGTCCAGTCTTATGGTTGCTCCCCTATTCTACAGTGTGGCACTGCACACACTTCTGAATAAAAATCTTGCCTTTGACAACATCACCCACTTTTAATTCT
s HiC_scaffold_1 165499078 897 - 233722169 aaatgttaaatattctttatt-----------tggtATTATACATACACCACACTATAATGCTTTTCAGTAAGTAAAACGCAGCACTTTTTAGATACAGGGTATTCTAATCAAACTGGCATAGTCAAGACCAAAAATATAGAT-GTTTCTTCCTTGTCTTCAACCATTCACTCTCTTTATCAGTCTAATAAACACAACTGAAACAGGAGGGTCTTGCTTGGTTTTGCAATAATGAAGGATTTCCCTAGTATTTAACCAT--------------TTatataaatctaaatataaaaccAACCTTCAGTAGGTTTTGAGATGACAGTCTCAATCTTTGCAAAAAGTCAAACATTCCTAATCAAGTCCAACCATAcatttagaaagagaaaacactgaaaatatttactgaactgGAATtactatcaaaacttgaaaaaaaaatccacttaacAAGAAaccaattttatttaaatcagtACTATCCAA-AAAAATATTCTGTCAGCCACTCATGATCTGAATTCTAGTGTATGAGTTCTATTACATTATGGTACACATAAAAAAGCCATAGGTCATTTCTG---------TTCTGTAGTAAA-ACGGCAATGACTGTTACTCATTAGTAGCCTTTTTGAGGTACACTATTTAGTCtgccctttctcccttcttcGAGATGCCAGCGAAGATAATTTTTGTCCCAGGGATATACTTCTTGGGATTTTCCAAACACTCTACTAATGTATCCTATCCGCAGGTGATGCCTTTGTTCTTGTTGGCATCTGTGTAGAGAATCCAGCAACATGACATGTCTTCCTTCCAAACACCCCATGGAGGTTTGGTGTGGTCTTGTGCTTGTCTCCCTTCTCAACAGTGTGGCCCTGGGCACACTTGTGTACAAAAATCTT---CTTGCCTGTCTCAGGCATTTTTAAACCT

a score=14375
s chr3            81846896 368 + 160039680 aaagTATATACAG-CAAATTATTTTCTTAAGTTGATGGCCAAAACTTAAAGTGTTATTTTTCATG--ATTTCTAACCTTGCCA--ATTTACTTAATGTAGTTTGGTTGGATTTCTGTGAAAATTATCTTCC-AGGGTAGTATTTGATTTTTCCTTTCTTGGGTTGGGGTAGGGGAGTAACTAACTTCACTACAATTAGTATGTATAGATCAGAATTTTATGAAAATGCAGTGTGCTACCAGTGTGATAATTTAAAAGCATTTAAATGAAAGACACATAGATAAGATTCAAGATTGTTACTGCTTTGATCACCGCAGCTTCTAGAACCTACTTTCTTTTCCTGATTTCaaaacagaggaaaaataaaattaaaaa
s HiC_scaffold_1 113285727 351 - 233722169 aaaatttgtATAGGCAAACCATTTT---AAGTTGATGGccaaatgttaaaatgttatttttcatatcatttataATCTTGTCACAATATACTTAACAAAGTTTGGGTAGATTTCAGTGGTAATTATCTCCCCAGAGTAG------GTCCCCCCACCCCCGGGG------ATGGGGGTTAATAACTT---TACAATTAGTATGTAGGGTGCAGAATTTCAGGCAAATGAAGTGTGCCAGGAGTGTAATAATTTAAtcgtatttaaaagaaaaaaagacgaATGCA---CAAATTTGTTGCTGCTTAGATCACTGCAGCTTCTAGGACCCAATTTCTTttactgattaaaaaacaaaacaaaa--aaaataaaaaa

a score=8818
s chr3           82298731 203 + 160039680 GCTCTCTCTGCAGTGCTTCCTCGCTGCACTGCCTGGATTTGGTTGGATTTGATTTGATTGTTTTCGAGTCCTAGGCATAAAACAGCTTTGTCCACCAGCCAGGTATCAAGCTAAGATGAATATAGGCCTGCCATTTTCTCTGCTCCTGATTGATGTAAGAGCAACACCACCACCAAGTTGTCTCTTTGCTCATTGCCAGGGGG
s HiC_scaffold_1 37912045 196 - 233722169 GTTTGCTCTTTaatcctccctttttgctcttattgccttttttt---ttttttttcatcatgt----gTCCTAAACATGAAACAGCTCTGGCCACCAAACAGGCATCAAGCTAGGACTAACAAAGGACTGTTATCTACTCTGCCCCTGACTGATACAAGAATAACACCACCAATGAGGTGTCTCTTTGCCCATTGCCAGGGgg

a score=4522
s chr3            82492326 187 + 160039680 AAGCACCATTCTACCCGAGCCACTGTA-CTGGCAATGCTGCCATCACCCACAGACGTTCCTGTCTCTTGAGACTTTCTACATGGACTTGCAC-AGTGTCTTTTCAGGAGGCACCTGAGACTTTAGCCTCTGCCTAGGGCTGTGTCATTGATTCCTTTCCCTCTGAGGCTTCCAGCATAGTAGACTGAGC
s HiC_scaffold_1 218601036 184 - 233722169 AGGCCACATTCTGCTTACACCCATGTGTCTTGC--TACTGCCATCACT-GTGAAC--TTCAGTTTGTTTAGCCTTTCAGCCCAGACTCACACCAGGGTCTCTCCACGAAGCTTCTAGGCCTTTAGTCTCAGACTAACACTGCATCCTTTATCCTTATCATTCTCTGGCTTCCAGTTTCTTGAACTGAGC

a score=8655
s chr3            82577554 262 + 160039680 CTCCTCCAGCCAAGCAAAATGTCCAAAGGTTAAAAAGGCCAAGGAGAAGAAGGTAGCCGTTGTTCCCACCATTCTGAAGA--AACAGATTAAAAAGGTGGTCAATCCTTTATGTGAGAGAAGGCCCAAGAACTTCAACATTGAACAAAACATCCAGCCCAAAAGAG--ATCACACACTTCCTCAAACAGCCCTGTTGCATCAGGCTAGAGCAGCAAAGGGCCATCCTCTATAAGCTGCTCAAAGTACCTCCTGCCATTAATCAGCT
s HiC_scaffold_1 171413810 254 - 233722169 ctcTGTCAGCTGCCCAAGGTGACAAAAAGG-AAGAAGGCCAAGGGGAAAAAAGTGGCCCTGCCTCCTGCTGTCATAAAAAGCAGGAGGCCAAGAAGGTGATACATTCCCTGTCTAAGAAGAGGTCAAAGAACTCTGGCATTGGACAGGACAGCCAGCCCAAGAGAGCTCTCACCCACTTTGTCAAATGGCCCTGCTGCA----GTGACAGTGGCA-------ATCCTGTGTAGGCAGCTGAAGGTGCCACCTGTGATTAaccagtt

a score=11537
s chr3           82577672 309 + 160039680 AGGCCCAAGAACTTCAACATTGAACAAAACATCCAGCCCAAAAGAGATC--ACACACTTCCTCAAACAGCCCTGTTGCATCAGGCTAGAGCAGCAAAGGGCCATCCTCTATAAGCTGCTCAAAGTACCTCCTGCCATTAATCAGCTCATCCAGGCCCTGGACAGGCAAA--------------------GGA----------------------------------------------------------------------------------------------------------------------------------------------------------CTACCCAGCTGATTAAACTTGCCCACAAGTACAGGTCAGAGACAGAGCAAG---AGAAGTAAAGGGTACTGGACAAAGTTGAGAAGAAAGCTGCTGGCAAAGGGGACAGCCCAACTAAGAGACCACCTGTCCTCCGAGCAGG
s HiC_scaffold_1 39262589 485 - 233722169 AGTCCCAAACTCTTCC---TAGGACAGGACATTCAGCCCAAGAGAGATCTCACCCGCTTCGTCAAATGGCCCCGCTACATCCGACTGCAGCGACAGAGGGCGATCCTGTATAAGCGGCTGAAGGTGCCCCCTGCGATCAACCAGTTCACCCAGGCCTTGGACCGCCAAACAGGTGGGCTTTGGGGGTGTGGAATCAGCCTAACTGGAAAGGTGGTGCATGGCCCTGTGTGTAGCCCTGTGGGCTTCTGCTCAACCTGTAGTACTGCTAGGGACTTCGAATTTACATCATGCTAAGCGACAGACTGGACCTGAAACTGCAGGGCCTAATGGAAGGATGCTTTCCTAGCTACCCAGCTGCTTAAGCTCGCCCACAAGTATAGACCAGAGACGAAGCAAGAGAAGAAGCAGAGGCTTCTGGCCCGGGCTGAGAAGAAGGCTGCTGGCAAGGGGGACGTCCCCACTAAGAGACCTCCCGTCCTCCGAGCAGG

a score=13931
s chr3            82577809 523 + 160039680 ATCAGCTCATCCAGGCCCTGGACAGGCAAAGGACTACCCAGCTGATTAAACTTGCCCACAAGTACAGGTCAGAGACAGAGCAAGAGAAGTAA--AGGGTACTGGACAAAGTTGAGAAGAAAGCTGCTGGCAAAGGGGACAGCCCAACTAAGAGACCACCTGTCCTCCGAGCAGGAGTCAGTACAGTCACCACCTTGTTGAAGAACAAGAAGGCTCAGTTTGTGGTGATGGCCCATGATGTAGACCCCACTGAGCTGGTGGTTTTCCTGCT----------------------------------------------------------------------------------------------------CAGGTTAACTTAGAAGACAAGGCTGCTCTAGCAAAGCTTGTGGAAGCTATTAGGACCAATTACAACAACAGACAGATATGACTGGACCTGCTATCACTGGGAAGACAACTCCCTGCACCCCTAGTCTGTGGCTCACAT-TGCCAAGCTGGAAACGGCAAAGGTTAAAGAACTCGCCACTCAACTGGGTAAAATGTACACTGCTAAGTTTTCTGTGCATAAATATAATTACAAAATTAT--------------AAAAAGAAAAGGAAAGCC
s HiC_scaffold_1 171414396 572 - 233722169 accaaTTCACCCAGGACGTGGCCTGA------GCTACCCAGCTGCTTCATCTCGCCCACAAGTACAGAGCAGAGACTAAGCAAGAGAAGAAGCGAGGCAGCTGGCCCAGGCTGAGAAGAAAGCTGCTGGCAAGGAG---------ACCTGGGGACC-----------------------------------------TGGAGAGTAGGAAGGCTCAGCTAGTGGTGACTGCACACGACATGGACCCCACCGAGCTGGTTGTGTTCCTGCCTGCCCGTGTCAAAAGATGGGGGTCCCTTACTGCATCATCAAGGAGAAGGCCAGGCTGGGTGTCTGGTCCACAGAAGACCTGCATCACTGCTACCTTCACACAAATCAACTGAGA--ACAAAGACACACTGGCTAAACTGGTGGAGGTGACCAGGACCAAATACAAC----GACAGATACTCTAAGATCTGCCGGCACTGAAGAGGCACTGTCCTGGGTCCTAGATCAGTGACTCACATAAACCACGCTGGAAAACACAAAGACTAAAGAGCTTGCCACTAAACTGGGCTAAGTGAACTC--CTGAGTTTTCtgtacataaaaataac----aaattgtccttaatctggagaaaaaaaaataaggatgcC

a score=5394
s chr3           82577977  95 + 160039680 CAGGAGTCAGTACAGTCACCACCTTGTTGAAGAACAAGAAGGCTCAGTTTGTGGTGATGGCCCATGATGTAGACCCCACTGAG------CTGGTGGTTTTC
s HiC_scaffold_1 39263241 101 - 233722169 CAGGTGTTAATACTGTCACCACTCTAGTGGAGAACAAGAAGGCTCAGCTAGTGGTGATCGCACACGACGTGGACCCCATTGAGGTAGGTCTGCTGGGTTTC

a score=7845
s chr3           82578161 142 + 160039680 GACCTGCTATCACTGGGAAGACAACTCCCTGCACCCCTAGTCTGTGGCTCACATTGCCAAGCTGGAAACGGCAAAGGTTAAAGAACTCGCCACTCAACTGGGTAAAATGTACACTGCTAAGTTTTCTGTGCATAAATATAAT
s HiC_scaffold_1 39264399 140 - 233722169 GATCCGTCGTCACTGGGGAGGCAACGTCCTGGGCCCCAAATCTGTGGCTCGCATCGCCAAGCTGGAAAAGGCAAAGGCTAAAGAGCTTGCCACTAAACTGGGCTAAGCGTGCTCT--TTGGTGTTTtgtacataaaaacaat

a score=14660
s chr3           82671916 648 + 160039680 GAGACAGCAAGC---TGCCCCCTCCCTTTGAGAAACTTAATTCACTTGGTTTTTCTTGTATAAAAACCCTTACTTGGTAGCCATAGCTAGAGCCTGAGTCCTCTGAACAGAGACTCT-----GGGTTTCCACAGATGGTCAGTGAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCAGAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGCAATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGT---CATCAGTACTGGC---CAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGTGCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAG--CCACCGCAGCCTGTCACCTTGCCTGGGGC-------------------TTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATGGAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCTACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATAGAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGGCCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTTCAGGGTTGTGCCC
s HiC_scaffold_1  8999508 576 - 233722169 gagattacaggcatgcaccaccacactttggg---------TCACTTTGGTT--CTTGTATAAAAACCCTGTGTTG-CAGCTACTGCTGGAGC---------------AGGGACTCTAGCATGGGTCTTTATAAGATGTGAGTGAATTTCTG-TAGGGATACTTGGTAAACAAGGTCTCTTTCCAGAGGCTGGGAGT-CAGGTAGCTGTAGAGCTGGGAAATGACACGATTGGTATCCCTGGCAAAGTTGCCC--------------------TGAGCAGCAGCGCACACCCTGACAGGAATACAGCAGTCATAGCT-----------GTGCCACCATCAGAAGC------CTCTGGGAGTAGGA-----------CAGCACAGAGCCCCTGCAGCTGGTCACCTTGCAAGGGACGGTGCGGGGCTTGCCCATCTTGTTTCCCTGGTAGCTTCTCCACACAGGGGTGAC----AGCTTGGCT----GGGATGGTGCACCCTCGGATGGCAATGGCTACCTTCTTGGAGCACTTTAGACCCAAACCAACATGACCACTGTGGTCTATTG-GGCGACAGATACCTT--------------------GAACCTGGTCCACTGGCCGGCACGAGTCTGCTTCTGTACT-GTGTGATCTCCTGAGCCTCATTCCTGAGGGATGCTCCC

a score=15183
s chr3           82671928 636 + 160039680 TGCCCCCTCCCTTTGAGAAACTTAATTCACTTGGTTTTTCTTGTATAAAAACCCTTACTTGGTAGCCATAGCTAGAGCCTGAGTCCTCTGAACAGAGACTCTGG-----GTTTCCACA-GATGGTCAGTGAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCAGAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGCAATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTACTGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGTGCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTCACCTTGCCTGGGGC-------------------TTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATGGAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCTACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATAGAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGGCCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTTCAGGGTTGTGCCC
s HiC_scaffold_1 71897955 481 - 233722169 TGCTCCCCTCCATCcaga--tttaattcattttatttttcttgtataaaaACCTTTATGTTGTAGCTACTGCTGGAGCTTGAGTCCTCCAGACAGAGACTCTGGTGTAAGTTTCCTCAAGATGCTCAGGGAATTCCTGGCAGGAAGACTTGGTGAACACAGTCTCTTTCCAG-GGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTCTGGG-GCAAGGGTCAGATGTAC----AGAGCCACCGTGGCACATCACCTTGCAAAGGACCGTGTGCTGCTTGCCAGTCTTGTTCCCTAAGTAGCCTTTTGGCACGGGGGTG-TGCAGAGCTTGGCC----AGGACAATGGCCTCCTGAATGACGGTGGCTCCTTACTTGGAACACTTCACACCCAGACCCACGTGACCATTGTGGTCCCCAAAGGCAACAGGTGCCTT--------------------GAACCTGGTCCACTGGTCAGCAGGAGTTTGCTTCTGCACAGGCCTAATCCTTAGAACTTCATCCTTGAGGGATGCACCC

a score=18207
s chr3           82671952 585 + 160039680 ATTCACTTGGTTTTTCTTGTATAAAAACCCTTACTTGGTAGCCATAGCTAGAGCCTGAGTCCTCTGAACAGAGACTC-----TGGGTTTCCACA-GATGGTCAGT----GAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCAGAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGCAATGTTGCCCAGGA------TGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTACTGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGTGCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTCACCTTGCCTGG-------------------GGCTTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATGGAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCTACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATAGAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGGCCAGCCCAAATCTACATCTGC---ACTGGCATGATCTTT
s HiC_scaffold_1 31945805 558 - 233722169 attcactttatttttctcatgtagaAGCCCTGTGTTG-TAGCTACAGCTAGAGCCTGAGGCCTCTGGACAGAGACTCCGGTGTGGACTTTTACAAGATGGTCTGTCTGCAAATTCCTACTG-GGAGACTTGGTGAACACAGTCTCTTTCCAGAGG-TCAGGGGTTTGGCAGCTGGATGTCTTGGAGATGATATCAATGGTGGCCTTCGTGAAGCTTCCCAGAGGAGCTGTGCAGCCCCTGGCAGAGGTATGGCAGGCTTCAGT--------GCAGCCAT-----------CAGAGAGGCAG-----------------CCTGGGCATGGGGCTTAGATGC--TGACAGAGACATAGCAGCCCCTCATCTTGCAAGGCACAGTACGGGGCTTGCTGGTCTTGTTCCCCCCGCAGCTTCTCTGCAAACAGACAATGGAGAGCT----CAGCTAGAATCACTGCCCTTCAGAGGCCAGTGGCTACCTCTTTGGAGCACTTTACACCCAGACCAGCATGACCATTGGGGACCCTAGGAGAAACAAACACCTT--------------------GAGCCTGGTCTGCTGTCCAGCACAAATTTGATTCTGCAGGACTGGGATCATCTTT

a score=7995
s chr3            82865251 389 + 160039680 TACTCAACAAAGGCAAACCCACGGTTCTTGGTTTTGTCAGTTGCACTTGGATAAACAATCACATCCACAACACCTTCGGTAACTTTCTTCATTTCATCCAAAATTTCTTCCTTTTTCTTTTCTTTGGGAATTGCTCCAATAAATAATCTGCAATTATCCAAGCTTACACACACACCAATAAACTTCCCTGGTCGAATTTCATAATTGTTAAGAATCCGGATGGCTAATTGGGC-----TTCTTCTTTAGTAGTATACATCACAAAAGCATAACCTCTATTTTCACCACTAAAT---TCCATCATCAGTC-TAAATTCATATATCTTCCCAGCTCTTTCAAATACAGGAACCAGTTCATCTTCATACATATCACGAGGTATTTTTCCAACAAAAACTTC
s HiC_scaffold_1 106740886 383 - 233722169 TGTTCAAGGAAGTAGGGCCCCCAATTCTTGTTTTTGTCA-------TCAGGTTGGTGATACAGTCCATCAAACCCTCTGTGACTTTACTGATTTCTTCCAGAGTGTTTTCTTTAGTCTTATTCTTTGGGACAAATCCAATGAAAAGTCTGCTGTTTGCCACAGAAATACACACTCTAAGTTATTTACCAGGGTGAATTTCATAGTTGTCACACAGTTTAACAGATTCCTGTGCAATTTTCTTTCTATAGAAGTG------ATAAATGCATGTCCTCAGTTCTGACTAGACAGTGGATCCATCATAAGACATAGACTC-CAAATGGGTCTAGCCTTCTCAAAAAGAGTCACCAATTCATCTTCATATAGATTTGTTGGTATTTTACT-ACAAAGGCCTC

a score=4840
s chr3           83033146 259 + 160039680 CACAGCAACATGCAGTTCAGTACCTTTGACAGAGATGCCGACCAATGGGAAGAGAACTGTGCAGAGGTCTATGGGGGAGGCTGGTGGTACAACAGCTGTCAGGCCGCCAATCTCAATGGCATTTACTACCCCGGGGGCACCTACGATCCCAGGAACAACAGCCCCTATGAGATAGAGAACGGGGTGGTCTGGGTTCCCTTCAGAGGAGCAG--ATTATTCCCTCAGGGCCGTTCGGATGAAAATCAGACCG--CTGGTGGGAC
s HiC_scaffold_1 42229372 237 - 233722169 CACAGCGGCATGCGGTTCACCACCAAGGACCGCGACGGCGACCACTCGGACAACAACTGCGCCGCCTTCTACCGCGGCGCCTGGTGGTACCGCAACTGCCACACGTCCAACCTGAACGGC---CAGTACCTGCGCGGCGCGCACGCCTCCTACGCCGACGGCGTC----------------GAGTGG-------TCCTCTTGGACCGGCTGGCAGTACTCGCTCAAGTTCTCCGAGATGAAGATCCGGCCGGTCCGGGAGGAC

a score=3955
s chr3           83260196 184 + 160039680 ATCATGTCTTACTGTCATTACAGG-AATCTCACCGGGAGACAAAACACAACTTCTGGGATA--TAATCAGGAGCTGTACTACCCTGCCTATGACCTGTATTGAGCCAAAAGTATAATCTAAACTAAACCCTTT-------TAGGTTGATTTTCTTGGGTATTTGTTTTGGGAATAGAAAGCAGATTGACACGAT
s HiC_scaffold_1 71991720 169 - 233722169 ATCATTTTCTCCCACCATAATGGGTAGCCTCACCACAAGCCCAAAAGCA---TCAGGGCCAATTGATCATGAACTGGA--------------ACCT--------cggaaactatgagccaaaattaacTTTGTCTCTGCGTAAGTGGATTTTCTTGGATATTTGTTATGGAAACAGAAAGCCGACTGACACTAT

a score=4097
s chr3            83376676 100 + 160039680 CTAAGTTTGTTGAAGCGTATCCTATAATGTTCCCCAAATGACAGGATCAGCTAGTGGTACATTTCTCAGAACACGTCTCCAACATGAAGTGACACATGAC
s HiC_scaffold_1 181654489 100 - 233722169 CTAGGTTTGTATAAATACACCCTATAGTGTTCACACAATGACAAACTTATCTCATGATGCACTTCTCAGGATGTATCCCTGTCATTAAATGATAAATgac

a score=5946
s chr3            83588794 289 + 160039680 AGGTTTCTAAGAACGAGATAAAAGCTGGCATCTCTACCTTCTTTGTGCATCTGTCTCCTTT------ACCCTGGGTC----CCTGATCACCTTTGCACATAGGTAAGTAAACCAATCAGAGAGTCTGTCTGA--------------------CCGACTCTA----------------------CCCTTTTAAGGGGAAAGACATAAAAAGAGCAGCAACTAAAG------CACGTTCCCCGGGG--------------GCTTTTATAGTGTTCTTTTTCGGGTAACCCAAAATC-TGTGTCTAATTCTCCAGTCACTATCTTAAACCTGTGGTCACCTAAGATTCCAGGAACAGCCGAGCTT
s HiC_scaffold_1 165867158 360 - 233722169 AGGTAGCTAAAAGCAGGATAAAACTCAATATCTCCACCTTCATTTT--ATCCATCTCCTATCTTCAAACTTTGGGGCAGGCCTTGCCCAGCTCTGCACATAGACCTGTTCATCACAAGGAGCAGCTGCCTAAAAATTGCTAATACAGAGTCACCAATCCTAAACACACCTAACCTATCTCCTCTTccttcaagactgaggacacAAAGATGAGAGTAACCCAGGTCTTTTCAAGCTTTGCAGGGTCATGGAATTATCAGCTTTTACAATGTCCTGTTCCAGACACCCTGGAGTGGTGTCTCCAAGTTTCCAGTCTTTGCCCTAAACCTGCAGTCACCTCCGATTCCTGGAAAAGCAGAGCCT

a score=4115
s chr3            83588825 286 + 160039680 CTCTACCTTCTTTGTGCATCTGTCTCCTTTA-----------CCCTGGGTC-----CCTGATCACCTTTGCACATAGGTAAGT-----------------------AAACCA--------------ATCAGA---GAGTCTGTCTGACCGACTCTA--CCCTTTTAAGGGGAAAGACATAAAAAGAGCAGCAACTAAAGCACGTTCCCCGGGGGCTTTTATAGTGTTCT----TTTTCGGGTAACCCAAAATCTGTGTCTA--ATTCTCCAGTCACTATCTTAAACCTGTGGTCACCTAAGATTCCAGGAACAGCCGAGCTTCTTCGGACAGACCGAATCCCAGATAAGA
s HiC_scaffold_1 136801392 335 - 233722169 ctcTGACTTGATTTTGTATCTGTATcctttattaccttaaaactttGGGTCAGATCCCTGCTTAACTT-ACATATAGGAAGGTTAATTACTTGAACATCTGTCTAAAAACCAGTAATACAACATTCATTAGACCTAAATTTACCTAGCCTATCTTATTCTCCTTTAAGGCTGAGGATATA------GGAGTAACTAC--CATATTTTCAAGA----TTTGTAGGGATATCTAATTGCCAGCTTTTGCAAGATCCTATCCTAGAAATCTACAGCCATTATCTTAAACCTGCAATCTCCTTAGATTCCAGGAAAAGCTGAGACT-TTTAAAAAGATC-AACCCATGATAAGA

a score=4365
s chr3            83711524 162 + 160039680 ATCACAAAAGAAGAAGCGGGTAGAAATGAGAAGAATCCAGCAGGAGCTGGGGGGACAAGCGAGAGGTGTGAGGGGTGAATGTGACCAGAATGTGTTGTGTACATGTTTGAAAATGTCATAACGAAAGCCATTAGTATGTATAACTAGTGTACGCAAATAAAA
s HiC_scaffold_1 192217890 154 - 233722169 ATTGTAAGATAAGAGGCA---AGGGATGAGAGGGAGAGGCCAGAAAAAGGGGTG-----CAAGGGGTTGGAAGGGTCAGAATAACCAAAGTATGTTATGTACCTGTGGCAATATGCCAGGATGAAACTCACTATTTTGTATCACTAATATAAActaatagaa

a score=10327
s chr3            83958262 331 + 160039680 CAGAATAAGCTAAAATGCAAAGAGAAAAAATGGTAGAAAGGGAAG------------------CACAGGTCAAACTCTCCTTTTGCGAA-TGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTATA-------TACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTT
s HiC_scaffold_1 167387343 352 - 233722169 cacaataacaaaaaa---aaaaaaaaaaaaaggcgaaaGTTGAGGGTACATGCAAATAACTGATACAGGTTAAATATCCTTTATCCTAACTGTTTGGAACcacaaatatttcagattttagattttt-taatttttttaatatttgcaaatatgCAATGAGGTATCTTGGAGATGGAAGCCAAGTCTAAGTATAAAATTGATTTATGTTTCAAATATACTTTATACA-TATAGCCCACAAGTAGTTTATACAATGTTTTTAGTGCATTTGCATTTTGACAACAACCCATCACATGAGGTCAGGTGCGAAATTTTCCAATTGGGGCATCATGTTCATACTTAAATATTTTGGAGTTTT

a score=7460
s chr3            83958305 329 + 160039680 AGCACAGGTCAAACTCTCCTTTTGCGAATGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACA----------GCTTATATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACA-CTCAAACAGTGTGGAGTTTT-----TTTAATGTTCTGTATTTCATATTAGAGATGTTCAACCTGTA
s HiC_scaffold_1 112013984 337 - 233722169 AGTACAGATTGAATATCCCTTATTTGAAATTTTTGGACCCAGAAGTGTttcaaatttcattgtttttggatTCTAGAATATTTGTA---ACATAATGGGATATCTTCAAGATGAGACCCAAGACTAAATACGAAATTCATTGATGTTTTATATACACCTTATAT-ACACATTCTGAAGGTgattttatgc--aatattttttatgtacTTATATTTTGCTTGTGA--AGTCATATAAGATCAGTTGTGGAATTTTCCACATATGGTGTCATGTTGGCAGCTACAAAATTATGGATTTTGGATCATTTTGGatcttggaattttgattatgaaTGCTTACCCTGTA

a score=9795
s chr3           83958305 317 + 160039680 AGCACAGGTCAAACTCTCCTTTTGCGAATGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATAT----CAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTT--------CACGTACACATTATATAATACAGCTTATATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTTTTTAATGT----TCTGTATTTCATATTAGAGAT
s HiC_scaffold_1 53185667 331 - 233722169 AGTACAGGCTAAATACTATTTATTGAAACGCAGGGGACGAGAAGCATTTCAAGTTTTAGgttattttggattttggaatatttgcttatatataatgaaatatctgtTTTGGAGATGAAACCCAAGTAtcaacatgaaattcatttatttttatatacactgTATACACATAATATAAGTgtaattttatacag--tatttatagGGCACCTGTGTTTTACCTGCAAATTATCACATGAAATTAGGTGTTAAAATTTGCACTTATGGTATCATGTTGGCTCTCAAAAAGTTTGGATTTTCGATCATTTTGAATCCGATTTTTGTACTATAGAT

a score=7880
s chr3           83958312 350 + 160039680 GTCAAACTCTCCTTTTGCGAATGTACAAGACCAGGAAGATTTTAGGTGTGGGCTCTTTCTG--AGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGC----------TTATATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGTATATGAGATTGTGTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTTTT-----------TAATGTTCTGTATTTCAT--ATTAGAGATGTTCAACCTGTATCTGCTAGAGCAGGATCAAGAAAAGCCA
s HiC_scaffold_1 66172908 361 - 233722169 GTGAAGATCCCTTATTTGAAATGCTTGGGATCAGaaagatttcagatttcagattttgggGGAATTTTTGGAATAGTCTCAAa-acataatgagatatcttggaGCTGGGATACAAATCTAAACTTAAAATTCACTT--GTTTCATATATACCTCATACA-TATGGCCCCAAAGTAATTTTATATAG--CATTTTCACTGTGCCTGAGTTTTGATTATAATCCATCATGTGAGGTGAGGTGTGAAATTTTCCACCTGTGATATCATGTTGGTGCTCAGAT--TTTggagtattttacatttttggaaaATGATTAACATTTCATGAATTGGATATATTAGAAAGGCATATATT------GTTTCAAGAACAGCTA

a score=4742
s chr3           83958365 105 + 160039680 TCTTTCTGAGTTCTGGGACATTTGCTTATACGTAATGAGATATATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATA
s HiC_scaffold_1 82173338 105 - 233722169 tttttcagatttttggaaTATTGTCACATACATAATGAGATGTCTTGGAGATGAGACCTAAATATAAACACAGAATCCACTTATGTTTCCTGTACACCATATATA

a score=5174
s chr3            83958375 285 + 160039680 TTCTGGGACATTTGCTTATACGTAATGAGATA-------------TATCAGGGAAGGAATCCAGGTCTAAACATAAAATTTATTTATGTTTCACGTACACATTATATAATACAGCTTATATACAGAATATTTTTGGTGTGTCTGTGTTCTAGTTGTAAGTAAGT-----ATATGAGATTGT---GTGTGAAATTTCCCACTGGGGATATCATGTCCACACTCAAACAGTGTGGAGTTTTTTTAATGTTCTGTAT--------TTCATATTAGAGATGTTCAACCTGT------ATCTGCTAGAGCAGGATCAAGAAAAGC
s HiC_scaffold_1 181870733 302 - 233722169 TTTTAGACTACttacatatacataatgacaTACTATGCATACGCATATTAGGGATGGGATCAAAGTCTAAACATAAAACTTATCTATGTTTCATATATGTTTTATAC-ACGTAGCTTGAA--------------GGTACTTTTATGCTAgatttttaacaattttgttgAAATAAAGTTGCATGGTATGGGGTTTTCCACTTGTGTCATCATCTTGGAGCTTGAAATGTGt-cagattttgaaaaattttgcattttggaaatttaGATTAGGCTTGTTCAGCCGGGTAATCAGTCCACTAAAGAGGGA--GATAAAAGC

a score=5879
s chr3            84051333 405 + 160039680 AGGCGCATATGTTCAAGGCTTGGTCCCCAGTGAACCACTGTCTAGG-GACTCTG---GGGAAATAATTGGATCATGATGGCTCTGACCTCGTGTACAGATTAGTTCATTGATGGGTTCATAATTTGATAGA--CTgtggtgg------aaacttgggagatg-gacctagttgaaaggactaggcccttggggacaatagctgtcct-------ctgtccctcattctgtttttctg-ctttccaggatgccatgcgaccatcagctctg----ctctttgacgcatgcaatctcttc--atcacactctgcctcatgacaaacaag--agctcagggccaatgggtctaaacctccaaaatcctccaccaaaataactatgtcttcctttaag-tcattttctcaggcactttgtcacagc-atgaaaaggtgac
s HiC_scaffold_1 111216021 411 - 233722169 AGGCTCATGTGTCAAAAACT--GTTCACCAAGTAGCACTGTTCAGAAGAATGTGCCTGGAAGAAGATTGCATCATGAGGGCTGTAACCTCATATGTGTATTAATCCAACGATAGGTTCACAATTTGACAGCGTCTTTGGGAGCTGATAGAACTTTGGAGGTGAGACCTAGTGGAGGAAGTGAG--CATAGGGG---AGGGGTGCCCTACAGGaactctctctgcttctggctcCTTGTCTTTCTTTGATTCCTGACTGTCGTTGGGTTAGCACCCTCCTCTAC-CATGAAGTCCTATCTTATCATA----GACCCATACCCATAAAGGTAGCTGACAg-----aggactgaaactgtga--------gccaaaataaacttttcctcttttaatctggttttcttaggtattttgtcacagcaacaaaaagctgac

a score=6941
s chr3           84051377 367 + 160039680 GGGACTCTGGGGAAATAATTGGATCATGATGGCTCTGACCTCGTGTACAGATTAGTTCATTGATGGGTTCATAATTTGATAGACT--------gtggtggaaactt--gggagatggacctagttgaa---------------aggactaggcccttggggacaatag-ctgtcctctgtccctcattctgtttttctgctttcca--ggatgccatgcgaccatcagctctgctctttgacgcatgcaatctct-tcatcacactctgcctcatgacaaa--caagagctcagg----gccaatgggtctaaacctccaaaatcctccaccaaaataactatgtcttcctttaag-tcattttctcaggcactttgtcacagcatga-aaaggtgacTAACAC
s HiC_scaffold_1 61617701 391 - 233722169 GAAACCTTTGGGAGGTGAATGCATCCTGATGGCTCTGACCTCATGACTGGATTAATCAGTTTATGGGTTACTAATTTAATGGGTTATTGGGAGGTGATGGGAATTTTAAGGGGTAGAGCCTAGTTGGAGAAAGGTGGTTACGGAGGAC-ATGCTCTTGAGAGGTACAGTCTGTTCCCAGcttcttcctctctt----tgcttcccactTGGCACCAGGTG---AGTAGCCATGCTCTGC----CATGCGCTCCCTGGCACGATGTTCTACTTCACCACAAGCCCAAGTGATGGGGCTAAGCAAAgagactgaaagctctgaaa-ctgCGAGTCAAACAGATACTTCTTCCTTTCAGCTGATTTTCTCACGTATTTTATCATGGGAACACAAAAGTGACCAACAC

a score=8374
s chr3           84051385 359 + 160039680 GGGGAAATAATTGGATCATGATGGCTCTGACCTCGTGTACAGATTAGTTCATTGATGGGTTCATAATTTGATAGACT--------gtggtggaaacttgggagat-----ggacctagttgaaag--------------gactaggcccttggggacaatagct-gtcctctgtccctcattctgtttttctgctttccaggatgccatgcgaccatcagctctgctctttgac---------gcatgcaatctct-------tcatcacactctgcctcatgacaaacaagagctcagggccaatgggtctaaacctccaaaatcctccaccaaaataactatgtcttcctttaagtcattt--tctcaggcactttgtcacagc-atgaaaaggtgacTAACAC
s HiC_scaffold_1 51901489 391 - 233722169 GGTAGAGTGATTGCATCATGAGGGCTTTGACCCCATCGATGGATTAATCTATTGATGGGTTTACAATTTGATGGGCTATTGGGAGATGATGGAAATTTAGGAGGCGGGTGGGATCTAGTTGAATGAAGTGAGTCTTTGAGGGTATGCCCATGGGGACAGTGTCTCCTTCCCAGTCCCTTCCtctgtctgtctccatct------------ctaCCCTCTCCCCTGCTTGTTGGCTGTCTTAAGGGGAACAACCTCCACTACAACCATGATGTTCTGCTTTGCCTCAGGCACAATAGCAGA--CCGTGGACTGACACCTCTAaacctgtgagccaaaacaacc-tttcttcctttcagatgattgatgtcaggtattctgtcacagcaacagaaagctgactaacac

a score=22644
s chr3            84174732 395 + 160039680 TCTAGCATCTCTCTTTCCAAGCTGATAGTGCTCCTGCGAACATGGTGAACGTGCCTAAGACCCGCCAGACATTCTGCAAGAAATGTGGGAAGCACCAATCCCACAAGGTGACACAGTATAAGAAGGGCAAGGACTCTTTGTATGCCCAGGGAAAGCGGCGCTATGACAGGAAACAGAGTGGCTATGGTGGGCAGACTAAGCCTATTTTCCGCAAAAAGGCTAAAACTACAAAGAAAATTGTGCTGAGACTAGAGAGCGTAGAGCCCAACTGCAGATCTAAGAGGATGCTGGCTAGGAAGAGATGCGAGCATTTTGAATTGGGAGGCGACAAGAAGAGAAAGGGCCAAGTGATCCAGTTCTAAGCCGATTTTGTTATGAAGACAATAAAATCTTGA
s HiC_scaffold_1 203219946 389 - 233722169 tttattgcctTTTTCATCGTGTAGACCGCTTTACTGCCAAGATGGTCAACGTACCTAAAACCCGAAGGACTTTCTGTAAGAAGTGCGGCAAGCATCAGCCTCACAAAGTGACCCAGTACAAGAAGGGCAAGGATTCCCTGTATGCCCAAGGAAAGAGGCGCTACGATCGGAAGCAAAGTGGCTACGGAGGGCAAACGAAACCTATTTTCCGGAAGAAGGCTAAAACGACCAAGAAGATTGTGCTCAGGCTGGAGTGTGTGGAACCTAACTGCAGATCGAAGAGGATGCTGGCCATTAAGAGATGCAAGCATTTTGAACTAGGAGGAGACAAGAAGAGGAAGGGCCAAGTGATCCAGTTCTAAAC----TTTGTGTTTAAGGCA--AAAGTGTTGA

a score=4723
s chr3           84404232 198 + 160039680 TGAGAAACA-CAGCCAGAGGCAGAAGAGGCTGCGACCCAGAGGAGAGAGACACACAAATCCAGGACTGCACAAAGTGCAGCTCATTGGCGACTTA--------------------------------ATGGGCCCTTGCACCTTAACACAGGAG--AGTGGGTGGTATGTCAAACTGCACAAA----------AGCCAGC----ATGTTCCTGGGCGTTGTAAAAAGCCAGTTATGTGTCTAACATC
s HiC_scaffold_1 67861375 246 - 233722169 TGAGAACCAGCTGCCAAAGGTAGAAGGTGCCAAGAGACCGAAGAAAGAAGCTGACAAACCCAGGACTGCACAAAATGAAATTTGTTAGGGACCTATGGACAGCATGTCTTAGGCAGAAGCAGGACACAAGGATCCCTGTACTCCAAGGCGGGAGGAAGGGGTTTCTATGCTAAACTAGACACAGGTAGGCCTCAGCCAACTGTAACATACTTTGGCTTTCTCAAAAACCA-TTAAATATCAAACATC

a score=3862
s chr3            84404244 82 + 160039680 CCAGAGGCAGAAGAGGCTGCGACCCAGAGGAGAGAGACACACAAATCCAGGACTGCACAAAGTGCAGCTCATTGGCGACTTA
s HiC_scaffold_1 198088829 82 - 233722169 CCAAGGGCAGGAGATGCAAAGAGACCTAAGAAAGAGGCGAGCAAATCTAGGACTGCACAAAGTGCAGATTTTTAGAGACCTA

a score=8581
s chr3            84648911 486 + 160039680 TAACAGGTTGTCAAGTTCAGTCAACCACTGCTGTG------TTACAGCTGGTACCATCTTTTTATGTAACTGTCCTGGCCGCATGGTTTGATCTGGGTCTTAGAGT--AAGACTGGCAGACTATAGGTGC-TCAGTTGTTGAAAAAGCACATGGGCAGGGTAGAGAAAACACATGCTTGCTCCAGTGGTCAGTAGGCCAGGT-----CTGGGGC-TATCGTCATCATCatc-----------accaccgtgttt-catgcagacctgagcagaatcttactgaaagactgggacagtcaaagggagagacaaactatgaagacagagacgccaagactcttagc----------caactgccagctatggtgaagaatcagagttttctacaaacaaggtcttcaagtttctgcaaaggtt----gagcttgcc-----aacccctaagtcaaatgagctatctgc-tcaaagctattaggagatgcatagcgcttctcacc---tgtgtgatctccaaaatcaatgagttctaag
s HiC_scaffold_1 135578835 510 - 233722169 TAACTGGCCATTGATTTCTCTCAGCAGCTACTGAGCTCTTCTTACAGCTTGTGGCATTATTTTGCAGAAACATGCTAAACTGATGGC--------------AGAGCTAAAGAC-------CTCTTAGTGCCTGAACTGCTGTAAAAGCACAAAGGTAGGGTAGGAGAAACACAGACCAACTCCAACAGGCAGTAGACCAGGTAAACCCTGCCCCATATCTTGAACAAAATATTACTTAAAGGACCAACATGTCTACTTGCAGAACTGAGTAAAACCTGACC--AAAGTTAAGACAGCCAAGGAGACA-ATACAAGATGGAGACAGATATGCCAAGCCTTTTATCCTCTTTTAGGCACCTGCCAAACA-AGTGAAgaatcagtgttctcagcaaaattTGTCTTCAGGTCCTAGGAAGCAATCTAGGAAACTGTCATCTTAACCCCCACAGCAGAGGTGTTATATACAGAAAAGCTAGTGACAAACTAATAGTGTTTTTCCCTGGATATTTGACCTCTGAAATCAGTGA-TTTTAAG

a score=4542
s chr3           84715902 258 + 160039680 AGTTCCTGCTCTCCTGGGACTGGTTTATGTCCCAGGAGAGCAAATGATTACAAAGCAAGTCTGCCTCTCAGGATTTGTCTCTTCTTCAAAGA----AGAAGAGCTTTTTTGCCACACTGGGAGAGGCACAGGTCTATCAGCAGC---------------GCCATGTTTTTGAACTCACCAACCTCTAGGACCTTGAGCAGTAATAAACCACACATACACACACACATTGC-CCAATCTCAGGAATACCACTTTAGTAGAAACTGCAGGAAGACAATGA
s HiC_scaffold_1 25625995 262 - 233722169 AGTTTCTGCTTCCATAGAACTGGACTATTTTCTAGTAGAATGGATTGTTACAAAGCAAGCCTGCCCCATAGGCATTTTTTCTTGTGCCCAGATTCCCTCTTATCTCTTCTATGTTGCTGTGCAGCATATGGCCCCACCAGAAGCTGGTGAGATGTTGATGCCAGGCTCTTGAATTTTCCAATCTCCAGTACtgttagccaaaataaact-------------tgCATTCCATCAGTCTCAGG--TATTgtttta-tagcaacagaaaacagactaaga

a score=28986
s chr3           84978429 679 + 160039680 CCCAGACTGAATTCCAAATTTGCTCTAGTTTGGTTACAGAAAAAAAAGACTTTTTTGCCACTGAAACTTGAGCCATCTGTGCCTCTAAGAGGCTGAGAATGGAAAAGTTTCAGATAATAAAGAGTGAAGTTTGCCTGCAAATAAAGAATTGAGAGTGTGTGCAAAGCTTATTTTCTTTTATCTGGGCAAAAA--TTAAAACACATTCCTTGGGACAGAGCCTGAGGTGCCTGTTCTGTGGAGAAA--CTTCTTTTTGAGGGCTGTGGTGAATGGAAGAACATACATAGCAAAACTGACAAGATATTTTAAAGATATATAAAACACAAA-GGAAAAGGAGGTTGCTGGTCAGTCGTAGCATCTTACAGTATTGGGGAAAACAACTGTTACAGTTTCATTGCTCTGAGTGACTGACGTG-----AGAGGAATTCGCTCTGCAGTGACGCTGTCTGTCACTCGCCTACCAGCTCGACGAGCAAGAGAGCGGGAGTCAGATGGTCCGCCTCATTCACCAGGAGCCGTAACTCAAGCTGAACTGTGAAAGTGG-TTAACACTGTAT-CCTAGGCCGTCTTTTTTTTCCTCCTCCTGTTTATTTTTTGTTT-GTTTTATTTATAGTCTGATTTAAAACAATCAGATTCAAGTTGGTTAATTTTAGTTATGTAACAACCTGACGTGATGGAGGAAACAA
s HiC_scaffold_1 48895469 613 - 233722169 ctcagaCTGAATTCCAAATTTGCTCTAGTTTGGTTATAGAAAAA------------------GAGACTTGAACTATCTG------------GCCACAAATGAAAGTGTTTCAGATAATAAAGAGTGAAGTGTACCTATAAGTAAGGTACCAAGAATAAGtgcaaagtttattttcttttatatgggcaaaaaaattaaaacactttcTTTGGAACAGAAC---------------TGTGAAGAAATTCTTCTTTTTGAGAGCTGTGGTGAATGGATGAA-----GGAATAATATTGACAAAATATTctaagaacatataaaaaataaacttaaaagaaaGTTGCTAGTCAGTCTTAGCATTTTACGGTATTTGGGAAAATACCTGTTACATTTTTCTTGCTCCAAATAACTGACAAGAAAGCAGAGGTTCTGTCTCTGTAATGAAGACA--------TCACATGCAAGCC-----AGCAGGGGAACAAACG-CAGATGGTTCACCTCATTCTCCA-------CAATGCAAGGTGAATTGTAAAAGTGGCTTAACACTGTATCCCTAGACAGTC--TTTCTTCCCCCTcc----tatgttttgtttcatttttttaatagcCTGATTTAAAACAATCAGATTCAAGTTGATTCATTTTAGTCATGTAACAACTTGACatg--gaagaaaacaa

a score=5914
s chr3            85486801 210 + 160039680 cttggttaccagctgatgacAAGTGATGGGTGGGATCCTGAAGGCTCTGAGTTAATCAA-TGGATTAATGCACCGATTGATTCATAGTGCAACAGCATTATTGGAAGGTGGGGGAAAGAAGAGGTGAGGCCTGGTTGGGAAAAGTAAGCCACAGAAAGGATATCCTTAGGAGCTACACCTTGCCATGCCCGCCCCTATACTGCTTTCCTGG
s HiC_scaffold_1 106028629 194 - 233722169 CTTGATTGCCAGTTGATGATGAGCT----------TTTAGAAAGCAATTAAATCATCAAGTGAATTAATCTATtgatgagatcataatttgaGGGCATTACTGGAAAGTGATGGAAAAGTGATGTGAGGCCTATTTGAAGGGAATGGGCCACAGAGGGGGTAACTTTGAGGACTATATTTTGTC-------CCCAGATCCTTTTTCTCTGG

a score=4783
s chr3            85486828 297 + 160039680 GGGTGGGATCCTGAAGGCTCTGAGTTAATCAATGGATTAATGCACCGATTGATTCATAGTGCAACAGCATTATTGGAAGGTGGGGGAAAGAAGAGGTGAGGCCTGGTTGGGAAAAGTAAGCCACAGAAAGGATATCCTTAGGAGCTACACCTTGCCATGCCCGCCCCTATACT---GCTTTCCTGGTCCCCAGCCATGTTTTATTGGCCCACTTCATGTtgcctccccactgtgatggactgaaagcgtgagatacacaaaccttttctccttttcctcctctttgtcagggatctcatg
s HiC_scaffold_1 165348584 254 - 233722169 GGATTGGCTCCTGCAGTCTCTGGCTTCCTCTGTGAATTAAGCCATTGATGAGATCATAATCTAATGACATTATTGGAAGGTGGTGGAAACAGGAGCTGGGGCCTTGAAGAGA--------TCACAGCAA-CATAACC-TGGGGTCTACATCTGGTCCCCCAACCCCTTCCACTTCggctttc-----------------tttact------tttctttctgcttcctggct-------------accgtgagatgagcagcttccctctgctGTGCCCCTCTACTCTGATGGCTCTCAtg

a score=8303
s chr3            85545524 392 + 160039680 AAGCAATGATTCCTCCCTGC--CTACTGCAAAGGTCAAAGCTGACACCTGTCTAACAAGACAGATTAACAACAGAAGAACTGAACAA----ATGTTCTCAAAGTTTTATGTGACCTGAGAGTCTCCAAAAATTAACGCTGAAAGGCTCAGGGAAAGCTGCATTTTATGCTAAGTCTGATGA-AACATATGGATGGTTATAGAGAAACATGATTGGACAGA--AATATGCCCTATTGATAATAAACTGGGCATGCAGAGACTCTCTTCAAGGGCTCACTATTCATACCCTTTTCTTGGTC--TCTGTAAGACATTCCTACACCCTGTGTATGAAGCAGGACAACTTGGGCCCTTTAGAGT-GACAGACGTC---------AGAGGG----------CTTTCCAAGTTTTATGACTTGCTTTGGG
s HiC_scaffold_1 153810586 387 - 233722169 AAGAGGTGATACTTTCCCTCATCCATCACAAGTGTCATAGCTGATAC-----TCAAAAGACagattaacagaagaaaagcacGTCAAGTTTATTTAATTAAAGTTTTATGTGAGATGTGAGCCTTCAAAAATAAAGGCCTAAAGACTCAGGAAAAGTT---------------TCTGAGgataagaaatgaaaagccatATAGAAATATCACTGGACAAAATAGTATGATCCAGAGTTAGTAGACTG---ATGGGGAAA-TCCCAGGAAGGATTGTTTGTTCAGATTC--TTCTTGGTTTATCTGTATAGTTTTCTT--CCTCTGTGTATGAAGCAGGAT--------CCCTTTGGAATAAATAAATGTCttcaaagaaaaagggaaaacattaCCTTTGTTGATTTTATAGATTACtttgag

a score=5914
s chr3            85868365 377 + 160039680 TGCTAAATAAAAATTACAGGAAGTCATTATTTTG-------------------------ACAGACGAAGCTAAAAACCAAAATGGAGTCACTTACATTGTAGCTCCCAATCACTAAGCTTGGTCAGGGCTGTTTGAACAGGACTGTTTGTCTGACTATCCAACAAAACAGGATTAGAGATTAGCACTCCAATCTCCCAAATGGGCCAGTTTCAAATGGTATGATAATGAATTTCCTTTGGTTTTAATCCTAATG-----------CAAAAGAAGGAACCTGCAATAACTAATGCTAACTGACCAGTTCTCAGATCTG--TTTCTGCTT---------------CAGGGAAAGAAACCTTGACATGAACAGTCAGCTCCATTAT----TCTGTTCCTGCTCTCTTTAAGTTCTTTTCTTCTCTA-AAACTAATCTC
s HiC_scaffold_1 119062967 385 - 233722169 TGCATATTACAAACTGCAGGAAACTATTGTTTTGGATTAGGCTCCTGTAACAGGTTCCAAAAGATCAGACTAAAAATCAAG-TGCAGTTATCCATGCTACAACTCCACAAAACCAAACT------------------CATAACTGGTTATCTGACCTTCTCAGAAATCAGGA---------AACGC----ATTTCCCAAATAAGCTAGTTTCAATCTGCATGACAATGAAGTTTCCTCTGCTTTAATCCTTACATTCTTTAGCCTCACAAAAGTAAACACACAAT--CTGATGTTGACTAATcgattat-atttctatttttctgtctcttgctctCACCTTACAGAGAAAGTACCTTTGAAA---------AGCccctatattttctttgtttctgctttcctCAA------CCCTTCTCTGCAAACCTACCTC

a score=11403
s chr3            85908117 232 + 160039680 TTTTTTAAAAGTATTTTCTCTACAAAGAATCTCATCAGCTACACAAAAATCTGCTCAGTTTTTATACTGAAGCTAATGTTGAGCTGCACTTGAATTTCACATTCTTAGCAAAATAATCGCCTGAGCACACATAC--TCCACACTTCA-----GGACAGCCActtattcttcagcctcatcttgctttctcttcatcttcctcctcttcttcctcatattctggttcactcttcttcttT
s HiC_scaffold_1 107766324 231 - 233722169 tttttttaaagcattttttctaCAAAGAATTTTATCAACTATTCAAAAATACGTACAGTTTTTAAACTTAAGCTTATATTGAACTGCACTTGAA-TTCATATTGTTAGCAAACTAATTGCTTGAGCACACATACATTCCACATGCCATTACCAGACAGCCCCTTATgtttcatcttca-------ttttcttcctcaccTTCTTCCTCCTTGTCATCTTCtgactctttcttctttctt

a score=10766
s chr3            85914580 346 + 160039680 GAATTAAGAAAAAAACA----------ATTTTTCTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCAC-CAGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTG-CAAGAGAACTGATGTGTGGACTGAGCACA
s HiC_scaffold_1 133881107 349 - 233722169 GAgttaaaggaaaaacagaatgtCACGAGCTTCCTTTTGTCAAAAACTGTCATCTTT--GTAATTTGCTGAATTGATCAGTGTAAAGGGAAAAATGAGAGGATCCCAATGTATGTTCTCTAGGCCTTTTAGAAAACATTGAGTT-------TGGCCACATACATGTGAACCCATATAAAGAGTTATATTGCAGACGTCAGGGCAGTGGATACTGTTAACAAAGGAATGCCATACAAAGGAAATCATGACAAAAGTGGAGGTTCCTATGGTATTACACAGTATATTTTTTGCATTGTTATTAACAACCAAGATAAAGGGAAAATTCTTGATAAGAGAATTAATGTGTATATTAAGTATA

a score=13449
s chr3            85914583 537 + 160039680 TTAAGAAAAAAACAATTTTTCTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGC-TTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGA--CTCTATAATGCCACC-AGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTGCAAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGA--GCCAGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAGCTGAGCTGCTGAAGCCCATTCCATACTAATTCATGGCCTAA
s HiC_scaffold_1 201300669 474 - 233722169 TTACAAGTAGTACAGTAGTGCTTTTGGTTAGAATTTCTCTCTTCTACTAATTTGCAgaaatgagaaagggaaaaaaccTGAGG----------------TGTACTTTaggccttttaaaaaaacatgggGTTGTTCCTTTGGCCACGTATATGTGAATCTACAAAAAGGATGGGATTGTAGACA---AGGGAGTGGGTACTGTCCATAAGAA----TGCCAGAGATGTC-CCATGGTCAGATTGGAAGAGCATTTACAGCGTCACCCAGCATGCTGTTGACATTGCTATAAGCAAGCAAGTTAAGAACAAGATCTTGCCAAGAGCATTCATGTGCACACTGAGCATATTAAGCACTCTCAGAGCGCAGATCACTTCCTGAAATGCATCAagaaaaaagatgacaaaaagaaagaaatgccagC-------------------CTGCAG---------------CCCAGAGAAATACATCTTGGAAGAACCAATGGGAAGGAGCTGGA-----------GACTCCCTATGAATTCAAGGAATAA

a score=24333
s chr3            85914590 530 + 160039680 AAAAACAATTTTTCTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGC-AAACCTGGAAGACTCTATAATGCCACCAGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTG-CAAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAGCC--AGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAG--CTGAGCTGCTGAAGCCCATTCCATACTAATTCATGGCCTAA
s HiC_scaffold_1 152995890 534 - 233722169 AAACATACATTAACTTTCAGCCAGAACTGCCATCTTCCAATAATTTGCCAAAATGATGAACATGAAGGGACAGAGGAGGGGAACCTGATATATGTTCTCTAGGCCTTTTAGAAAACATAGGATTGTTTCTT-GGCTACATACATGTGAATCTACAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTGTGCAAAAAGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACTA-TATGCTGTTGATATTGTTGTAAACAAGAAACTTAAGGGCAAGATTCTTGCCAAGAGGATTAATATACGTATTGGGCACATTAAACATTCAAAGAGTCATGATAGCTTCCTGAAACATGTCAAGGAAAATGATCggaaaaagaaggaagccaaagagaaaagTACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTGAACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=24730
s chr3           85914598 523 + 160039680 TTTTTCTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACC----TGGAAGACTCTATAATGCCACC-AGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTGC-AAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGAAAGAGGGAGCCA--GAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAGC-TGAGCTGCTGAAGCCCATTCCATACTAATTCATGGCCTAAC
s HiC_scaffold_1 55447181 532 - 233722169 tcttgcttttggCCAGAACCATCATCTTCCAGTAATTTGCCAAAATGATGAACACAAAGGTAAAGAGGTGGGGATCCCAATATATATTCCCTATGTCTTTCAGAAAACATGGGGTTGCTCCATTGGccacatacatacaaatatacaaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGGAATGCCACACAAATGTTATCATGGCAAAACATCATGAAAGAGTCTACAGTGTGACCCAGCATGCTGTTGGCATTGTTGTAAACAAGCAAGTTAAGGGCAAGATACTTGCCAAGAAGATTAATGTGCATATTGAGCATATTAAACACTCAAAAAGTCACAACAGATTCCTGAAATGTCCCAAGGAAAAtggtcagaaaaagaaagaagccaaagagaaaggCTCCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAAC

a score=23687
s chr3            85914603 516 + 160039680 CTTTTGGCCATGGAGGCCATCTTCCAGTAACTTGCCAAAATGACAAACACAACGGGCAGGAGAAGGGGCACTGGCTCTATGTTCTCTTGGCTTTTCCAGAAACATAAAGTTGTTCCTTTGGCCACATCCATGTGAATCTACAAGAAG-GGTGATATTGTAGACATCAAGGGAATGGGCAGTGTTTATAAAGAAATGTCCCATAAGTGTTACCACGGCAAACCTGGAAGACTCTATAATGCCA-CCAGCATGTCGTGGGCATCAGTGTAAAGAAGGAAGTTAAGGGCAAGATTCTTG-CAAGAGAACTGATGTGTGGACTGAGCACATCATGCATTCTAAGAGCAGAGACAGCTTCCTGAAGCAAGTGAAGGAGAACGATCTGAAGA--AAGAGGGAGCCAGAGACGGGAACCTGGGTTCAGCTGCAGCACCAGGATGCTCTACCCAGAGAAGCACCCTTCATGGGAGCCGACAGGAAGGAG-CTGAGCTGCTGAAGCCCATTCCATACTAATTCATGGCCTA
s HiC_scaffold_1 217546895 512 - 233722169 CTTTCAGTCAGAACTGTCATCTTCCAGTAATTTGCCAAAATGATGAACATGAAGGGAACGGGGAGGGGAACCCAGTATATGTTCTTTAGGCTTTTTAGAAAACATGGGGTTGTTCCTTTGGCCAAACACATGAGAATCTACAAAAAACAGTGATATCATAGACATCAAGGGAAAGGGTAATGTGCAAAAAGGAATGCCACACAAATGGTACCACGGCAAAACTGGAAGAGTCTACAGTGTTACCCAGCATGCTGTTGGCATTGctgtaaacaagcaagttaaGGGCAAGATGCTTGTCAAGAGGATTAATGTGCATACTGAGCATATTAAACACTC--AGAGTTGTGATAGCTTCCTGAAATGTATcaaggaaaatgatcagaaaagtaaaaaagacaaagagaaagttACCTGGGTTCAACTGAAGTGccagccagccctgcccagggAAGCACACTT--------CCAGTGGAAAGGAGCCTGAGTTGCTGGTACCCATTCCCTATGCATTCACTGCAta

a score=10730
s chr3            86137944 166 + 160039680 TCACAAATAGGACTTTTTATTTGTCACTATTAAAAATCTGGATTTTACACTGATTCTTGGACTGGCGGTTCATATCCGTCAGCTCGCTCAACCTTAGCACCCGTCTCGTCTCCAGCTGCTTTGCCAGAGCTGCCGCCTTCCCCATGCAGCTCCATGAGCTTGCCCA
s HiC_scaffold_1 116128537 164 - 233722169 TCACAAATAGGa--ttttatttattactattaaaAATGTGGATTTTAAACAGATTCTTGGACTGGTAGTTTGTATCCATCAGCACATTCAACTTTAGCTCTAGTCTCATCCCCAGTAGCTTTTCCAGAGCTACCGCCTTCACCATGAAGCTCCATGAGTTTCCCCA

a score=8150
s chr3            86138458 134 + 160039680 CATGAAAC---ATGATTTCCCACTTACATTCAAACTTGGGTTTCTTCAGCATTTTTACTTTTCTAACAAAGACGTCATGGAGAGGATAAATGGACTGGCAAGCCTTTTCTATGTCTTTCCCAATGCTGTCTGGAATC
s HiC_scaffold_1 116128677 134 - 233722169 CATGAAGCTCCATGAGTTTCCCC---AGTTCAAACTTGGGCTTCTTCAGCACTCTGACTTTTCTGTCAAAGACAGCATGAAGAGGATAAATAGAATGGAGAGCCTTTTCTATGTCTTTCCCAAGGCTGTCTGGAATC

a score=13329
s chr3            86139038 212 + 160039680 CAGTTTATTAACTACTTCCTTCAAGTCATTAGTCTGCACCTCTCGGGTCATGATTTCCATCATCTTCTTCCGGATCTGGCGGACTTGCTGGTGCTGCGCATAGGATGTCTTTCTTATCTGGTTGTTGCGTTTCTTAGTGAAGCCAACACAGAAAAGTCGGAGCAAATACCCATCGGTCGTCTTGACATCAACGTGAGCTTCGATCATGGTCT
s HiC_scaffold_1 116128810 209 - 233722169 CAGTTTATTGACCACTTCCTT-AAGTCATTTGTCTGCACCTCTCAGGTCGTGATTTCCATCATCTTCTTCTGGATTTGGCGGATTTGTTGGTGCCGAGTGTAACAGGTCTTCCGCATCTGATT-TTGCATTT-TTAGTAAACTCAACACAGAACAAATGAAGCAAATAACCATTGGTTGTCTTGACATCAGCATGAGCTTTGATCATGGTCT

a score=10081
s chr3            86141223 203 + 160039680 AGCTTTTGGTCTCACCTGCCACTTCTTGACCATGGAGCACATTTTGTCCCGGGTAAGATCCATACCATGGAAGTTAGTCA----GACAGTTTTTGCCCTGAACGTCCTCAGTGATTAGCTTGAATTTTCTAAACGCAACTTCATCATTCTGTAGATCAGCAAGGCTCACTTCAAACACACGACCCTTGAGGCCATCAGAGGCAATTT
s HiC_scaffold_1 116129002 192 - 233722169 AGCTTTGATCATGGTCTGCCGTTTTTTGGCCGTGAAACACACTTTGTCACGG-TGAGATCCACGCCATGGAGGTTAGTCATGCAGGCAGCTTTTGCCCTGAGCAT--------------TTGAATTTCCTAAAGGCAACTGCATCATTCTGCAGATCAGCAAGGCTGACTTCAAACACATGACCTTTGCGCCACTAAGATGCAATTT

a score=7171
s chr3            86141240 179 + 160039680 GCCACTTCTTGACCATGGAGCACATTTTGTCCCGGGTAAGATCCATACCATGGAAGTTAGTCAGACAGTTTTTGCCCTGAACGTCCTCAGTGATTAGCTTGAATTTTCTAAACGCAACTTCATCATTCTGTAGATCAGCAAGGCTCACTTCAAACACACGACCCTTGAGGCCATCAGAG
s HiC_scaffold_1 199903947 174 - 233722169 GCCATCTTTT-ACCATGGAGtgtatttt-ttatgaataagatTCCTGCCATGCAACTTGGTCAGGCAACTTTTGCCCCAATTATCTTCAGTAATTAGCTTGCATTTTCTAATTCTG---CCAGCATGCTGCAAACCAGTAAGGCCCATTTAAAAAACATCACCCTGACCACCATCAGGG

a score=6629
s chr3            86141697 105 + 160039680 TGGTTCCTTGAGTCCTCGTGACTAGTGTCTTCCCGATGTTCCTAATATTGAACATGGCTGGAGCTTTCACATCGTACCAGTC-TTTCTTAGAAAATGGATCGACCC
s HiC_scaffold_1 116129194 106 - 233722169 TGGTTCCTTGAGTTCTAGTGACTAGTGTTTTCCCAGTATCTCTTACGCTGAACATAGCCAGTGCCCTCACATCATACCAGtctttttttagaaaatggaTCAACCC

a score=6134
s chr3            86142506 87 + 160039680 CACTTTCTTCTTAGCTCCCTTCTTGCCACCTTTCGTCAGGCGCTTGTTCTTGCCGACCGCCATGGTGCCGACCGGAGAGCCAAAAGG
s HiC_scaffold_1 116129299 87 - 233722169 CACTTTGTTCTTGGCTCCCTTTTGGCCACCTTTTGTAAGGTGCTTGTTCTTGCCTACTGCCATGGTGCTACTCAGAGAGCCAAAAGG

a score=10550
s chr3           86262974 271 + 160039680 AAACTAGGCAAAGAACTTT-----ATTAACATTT--TCCAAATTTTATTCTTCGGCTT---------AATTTGCTGCAAAGAATGAATTAGGTAAAAGAGAAAACTGAAAAGAGCTGCAGTGTCCAGGGCGCTTAGGCTT-AAAAATATTAGAGATCTAGATTTTACCAGATCCATAATAAACAAATAATTTTAAAAAGCAGTCATGATATAAAATAGCAGCTC-CTGTAACTTCTG-CAAGTGTCACCTTCTTCAGAAGTTGCCATAGGTCAGTTTGCCTCATTCCTGG
s HiC_scaffold_1 63112024 287 - 233722169 AAACAGtgccaagatttttttaaaattaatttttgtttcaaactTTATTCCCAGGCTTTTCCATCTTAATTGACTACAAAGAGTAAACTATATGTAAGCAAAAACTTACAAGAGATGCAGTGTTCAAGAGGCTTGGGCTTAAAAAATATTAGTGATCTAGATTTTATCAgttacataaacaaaaacaatttaaaaaaaacaatcctAATATAACATAGCAGCTCTCAGTAATTTCttccaagttttatctttttcagaA-TCACC--AGTTCAGTTTGCCTTATTTTTAG

a score=27960
s chr3            86262990 681 + 160039680 TTTATTA--ACATTTTCCAAATTTTATTCTT---------CGGCTTAATTTGCTGCAAAGAATGAATTAGGTAAAAGAGAAAACTGAAAAGAGCTGCAGTGTCCAGGGCGCTTAGGCTTAAAAATATTAGAGATCTAGATTTTACCAGATCCATAATAAACAAATAATTTTAAAAAGCAGTCATGATATAAAATAGCAGCTCCT-GTAACTTCT-GCAAGTGTCACCTTCTTCAGAAGTTGCCATAGGTCAGTTTGCCTCATTC-----------------------------------------------------------------------------------------------------------------------------------------------CTGGCTTAGGATGCTGGGAAGCATCGCTGTCTGCTGCTTTGTCTC------------------AGTGTGGCCTGTAATGGTGAAGGTGTCTGCTGCCAGGGATGCCTGAACTTGAGGGTTGTTATAATGGATCCCTGTTCCTTGGTTTGTAAACATGTTCACCTCTTCAATACCAGAGATGTTGTTTACTCCTAACTTCTCTAAGGAGAACTGCAGTTTTTTTTTTTTTTATCATC-ACTGTTGCTGTTCTGTGAACCACCTT--CTTTCTACGAGCAGTTCCTTTCCCACCAATGCGCACTTGTGCCTGCAGTTTGGCGAGTTTCTCCTGGTTCATGATCGTTTCTTTCATCTTGTCGGAGTGGAAATGGGGCCTCATGGGGAACTAAGGTTCATGCTCAGGGGGTCTTGGGCAGACGAGCTAAGATTAGG--------CGGGGACACAAGATGACAG
s HiC_scaffold_1 222791870 832 - 233722169 tttattattccttatttCAAACTTAATTCTCAGGTGTCTCCAGCTTAATTGGCTGCAAAGAATAAATTGT----AAGCAAATACTAAAAAGAGCTGCAATGTCTGAGGGGCTTGGATCTAAAAAAAATAGAGATCTAGATTTTATCACATCCataagcaa-aaacaattttaaaaagcagtcatAATATAAAATAGCAGCTCTGAGTAACTTCTTACAAGTTTTACCTTTTTCAGAAGCTGACTCAGTTCAGTTTGCCTCATTCTTAGAATCCTCATCTAAATATCCACATGATTTGGaatttcatcatcatcatcatcctctcCAGTAGCAAGTGGTGCTTTTCCATCCACAAAGTGTCTGGGTAGGGTTTGGCCACTCTCCTTAAACTAGTCAGACTGCACCAAGCTAGTTCACGATGCTGGGTAGCATTTCTGTCAGCTGTTCTGTCTCTGGGTAACATTCCTGGGGAAAGTGGCCTATAATGGTGAAAGTATTTTCTGCTAGAGATGCTTGAACTTTTGAGTTGCTGAAGTGAATAACTGTTCCTTGGTT-GTATACATACTCACCTCTTTAATG---GTGATGTTGTTTACCTGTAACTTCTTTAATGAGAACTGAAGTTTTTTT-------ATCATCTGCTGTGGCTGTTCTATGAACCACTTTTTCTTTCTGCAAGCAGTTACTTTCC-ACCA-------CTTGTGCCTG----------AGTCTTTCCTGGTTCATGACAGGGTCTTTAATCTTGTCAGAGGAGATATGCGGCATCACATGGAACTAAGGCTGGTGCTCAGGTTGTCTCTGGCAGACAAGACAAGATTAGGTACACACACGGGGATGCAAGATGCCAG

a score=7564
s chr3           86275231 122 + 160039680 AGTGTTAGGCTACTAATTATTCAG--ACTCACAGATCAGAACACTGAGAGTAGACATAACCTCTCTTCTTTCTGCCGCTAACTGACGCACATGTGACACAGCAGCTACACCTGCAATGCCTTCA
s HiC_scaffold_1 39210490 124 - 233722169 AGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTA

a score=11083
s chr3            86607164 145 + 160039680 TGAGTTTTTAAATCATTCAGTTTCTATCGaaaaattatatttataatataatGTGACAGAAATTGCCACAGGAATGATATACTGATTGCAATAAGGTTGCATGCAGCAGCAGCTTTGCATTTTTATAACTTTCTTTGTTTATAAA
s HiC_scaffold_1 219153734 144 - 233722169 TgagtttttaaatcatttaatttctatagaaaaattttattcacaATATAATGTGACATAAATTGCCACAGGAATGATATACTGATTGCAATACGGTTGCATGCAGCAGCAGCTTTGTA-TTTTATAgctatttttgtttataaa

a score=5902
s chr3            86700253 131 + 160039680 TTTGATTCTAGATGCTG-AGCCCCTAATAGCTTTTAAATTTATACAGTT-TTTGTTTAG-CTGTCAAAACATTT--------AATTA-----TATCATGCCCAAAGGTGTAAAGCTGTCAAATAAATCCGAGTGTAGGCATAAACAT
s HiC_scaffold_1 170549159 147 - 233722169 tttatttttggttACTGTGGCTTTTTACAGCTTTCTAATTTATATAGCCATTTGTTTAGGCtgtcaaaacatttttaattttaattactgtGTATCATGCCTGAGGGTGTAAAACTGTCAGATAAATCTGAGACTATGCATAAACAT

a score=14181
s chr3            86802706 937 + 160039680 AAGAAAAGAATCCTGCCTTTCTGTGGTACCCA-GGCAGGGTCTGTATGGCACTGTT--------CTCTTGTAA----AGGAAAATGTTTACAGGATGTCTAGAGCCCTCAGTGTCCTGCAAAGGAAGGAGGAACATGTCCTTAAATTCCTTGCAGCACGATTCTATGGAGATGGCAGCAATCCTGACTTGCAGATGAA--CAGCATGGCAACAGAGGGGATCTGACGGCACATGTCATAAACTGAAG--AGAACCTTCGAGCTCCTGCTGGCAGCCCA----------GTCAAGAGAAGCCCTGTTGACATAG-CGTTATCTCCTCCAGGACAATGAACTCACAGG---CTATGCTGGAGTTTCCTGCTGTCACAGAGCATCTCCATGGTAGCTACATCGTGCCTGCGGCCTTCACTAACCAGATGGGGGCAGCTTCCGGGAGTCATGTCTCCTGATATTGTTAGACCCAGAGCTGACCACCAACTCCTCTTAGAAGCATCTTATGTCGGCTTCTTCCTGCCATGGTTTTTTTTTA-ACAGAT-GCCCTTGCTGT-------GCAAACACTGCCATCCAT----ACAACAGAGGAGCTCACT----------GTGTGTGGGGTC-----------------TACAAGAGTGGTTCTACCTCCCAAGAG-----GTGGAACAGAGCGGGACATGCCTGACCTCTGCTACCACAGTCATCCTGAAAAGCCTGAAAAGGG-TGAGCAGGCGGCTACTGCTGAGAAGGGTATGACCAAGGAAGGATGTCAGGGCAAATGGACAGTGCTAACCCTGAGTTTACTGCTGCTCAGCCTAAGGTAG----CTAGTCAGAGG--------------------------------------CTGAA-----------CAGGC-ACTACAGACGGCT-GCTTGCAACTCCCACTGCCCAGGGTAGAGTAGGGA-GAACCACCACCATGATGCCTTAGCCATTCTACTGCAGAAGCTTAAACAACATGGGAAGATGAAGGGTGGGAAAGAA---ACTGTTTTCTACAAAGAGAGCagggagggga
s HiC_scaffold_1 143059121 987 - 233722169 AAGAGACGAACACAGCGTTTTGGTGCTGCTCAAGGAGGGGTCCACATGGCACTGTTTTTGGCTACTATCATAACTTAAAAGAAATTTCCTCAG--TGCTTGGAGCTCTTGGTAGCCTGCAAA-----------------------CTCCTTGCTGCAGGAACCCATTTAGGCCGCACCAATCTGGATTTCCAGATGGAGCCAAAAGGCCAAGTAATTCGATCT-ACACCATAAATGAGAAGTAGCAGTGAGAGC-----AGCTTCTGCTGGCAGCCTGAGCCACAGTGGCCACAGAAAATCCTGCTGACCTAGGAGTCATTTCCCCTAGGA----GCCCCAGCAGGGGCCTGTGCCAAAGTTCACTG--------GATCTACTCC--TATAGCTGAA------------CATTCGCTAACCAGATCCAGGCAGCCCTCTGCTGTCATTT----GGTCATTACTGATCCCAGGGA-GACCCACAGTCCCTCATA------TCTTACGTCAAC--CTGCCGACCACTGCTCAGGTTAACACAGATTATCCTTCATGTTGGTGAAGTGGACACCGCCATCCCGTGCAACAATAAAGGAGCTCACCAGTGAGTTTGGTGTGCTGGATGCCCTCATGGGAGTGCTGTGCATGAGTGGCAACATCTCACGCAAACACCTGTGGGA-------AGTCACGCCTGATCTCTGCCTCCACAGGTATCCTGAAGAGATTGAAAAAGAATGAGC-------TGCTGCTGAAAAGATGGTGACCAAGGAGGAATTTCAGGGAGAATGGACAGCACCAATCCCGAGTTTGCTGCTGCTCTGTCTGAGGCTGCAGACTGGTCTGAGGGCATGCAGTGCCCTCTGTGCCCATCCAGTGGGTCTCTACTGAGATCGAAGTGCTCAGGTGGCCACAGAAGACTGGCTTGCAGGCTGCACTACAGGTAACTGAGTGGAGAGGAACCACTGCCGAGAGGTCTTGA--GGTGTTCTGCAGACTCTTCAACAAAGCAGCAATAAGAGTGATGGAAAATAAAGcattaatttctaaaaaaaaaaaaaaaagatga

a score=15843
s chr3           86802722 483 + 160039680 CTTTCTGTGGTACCCAGGCAGGG-----TCTGTATGGCACTGTTCTC--------TTGTAAAGGAAAATGTTTACAGGATGTCTAGAGCCCTCAGTGTCCTGCAAAGGAAGGAGGAACATGTCCTTAAATTCCTTGCAGCACGATTCTATGGAGATGGCAGCAATCCTGACTTGCAGAT-GAACAGCATGGCAACAGAGGGGATC-TGACGG--CACATGTCATAAA-CTGAAGAGAACCTTCG---AGCTCCTGCTGGCAGCCC----------AGTCAAGAGAAGCCCTGTTGACAT-AGCGTTATCTCCTCCAGGACAATGAACTCACAGGCTATGCTGGAGTTTCCTGCTGTCACAG-AGCATCTCC--ATGGTAGCTACATCGTGCCTGCGGCCTTCACTAACCAGATGGGGGCAGC-TTCCGGGAGTCATGTCTCCTGAT-ATTGTTAGACCCAGAGCTGACCACCAACTCCTCTTAGAAGCATCTTATGTCGGCTTCTTCCTGCCATGGTTTT
s HiC_scaffold_1 25792931 514 - 233722169 CTTCCCGTGCTGCCCAGGCAGGGGTCCATACATACGGCGTTGTTCTTGGTTTTCATTGTAACTTAACAT--TCACA--ATGTCCGGAGCCCTTGATGTCCTGCAAATGAAGGAGGAGGACGTCCTCAGATTCCTTGCTGCAGGAACCCACTTAGGTGGCACCAATCTGGATTTCCAGATGGAGCAGTATATCTACAAAAGGAAAAGTGATGGATTCTACATCATAAATCTGAAGCAAACCTGGGAGAAGCTTCTGCTGGCAGCTCCAGCCATAGTGGCCATTGAAAATCCTGCCCACATCAGCGCCATATCCTCTAGGAACACCGGCCAGCGGGCTGTGCTGAAGTTTGCCGCTGCCACTGTAGCGACTCCTATTGTTGGCCACTTCACTCCTGGGACCTTCACTAACCAGTTCCAAGCAGCTTTCCGAGAGCCACGTCTTCTGGTGGTTACTGATCCCAGGGCAGACCACCAGCTCTTCACTGATGCATCTTACGTCAAC--CTGCCTACAATTGCTCT

a score=38704
s chr3           86864376 1001 + 160039680 cttggcttgaaatttcaccaatttccatccc--agaaatctccaccctggaaaactcctcccccaagaaatcctatataagcTTCTTCTTCGGGAAAACACCAAATGGTGGA-------------GTGGGAGGGCCCGGAGGACCCAGGGGCCCAGGATTAGGAGGCC--GCGGCAGATTCCG---CGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGGTAGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTG----GGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCT-GAGATCATTGACTTCTTCCTGGGTGCGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGTGCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGTCATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGC-TCCTGTGCCCAAGAAGCTCCTGATGATGGCTGGTATAGATGACTGCTACACTTCAGCCAAAGGCTGCACTGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACCTGACCCCCAACCTCTGGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGGATTTTATACAAGAAAAATGAAAGAATTAAGTCTGCTAaaagaaagaaa
s HiC_scaffold_1 55542882  928 - 233722169 CCTGTTTTCTGATTTAGCTGTTTTCAATTCCTCAGAAGTCTTttgcttaaaatgtttttctttc-----------------ctttttcttcaa-aatacgcCAAATGGCGGATGATGCTGGTACAGCAGGAGGGCTTGGGGG--CCTGGCGTTGAGAATAGAGAGTCCAGGCATGAGGGGCCAAAATGGAGAGTCAGACAGTTCTCTTGGAGACTTCAG-----------GGGCATGATG-GCTAGGGGTGAGGACAAGGAGTGA----ATCCCTGTTCCTGAGCTGAGCTGGCTGGCTGGCCAAGGACATGA---TCACCTCTCTGGAGGAAATTTCTGTCTTCTCCCTATCCATCAGGGGGTCTTGAGATGACTGACTTTTTCCTGGGTACGTTTCTAACAG-TGAAGTTCTAAAAATCATGCCCTTGCAGAAGCAAACTGGTGCTGACCTACAGATGAGGTTCAAGGCATTTGTCACTATTGGGAACTACAATGGTCAAGTTTATCTGGTTGAAAAGTGCTCCTAGGAGATAGCCACTATCACCTGAGGGGTCATCATCCTGGCCAAGCTCTCAGTTGTTCCTGTGAAGAAAGGCTAATGTGGGAACAAGA----CAAAGCCCACATTGTCCCTTGCAAGGTGACAGGCTGCTGTGGCTCAGTGTTGATGTGGCTGAT-CCTGCCCCCAGGAGCACAGGCATTGTGCTTGTGCCCTGTGCCCaggaagctgctgctgctggcagg----------------------------GGCTGCACTGCCACTTTGGGCAACTTCACCAAGGCCACCTTGGGTGCCATCTCCAAGACCTACAGTTACCTGATCCCTGACCTCTGGAAAGAGACTATGTTCACCAAGTCTCCTTACCAGGAATTCACTGACcatcttgtaaaaa-----------------------aaaaaacaagctccAACAGTATCTCCAACATAGGGTTTTTACACAAGAAAA---AGTGAACgaaatctgttaaaaaaaaaaaa

a score=51237
s chr3            86864441 938 + 160039680 aaatcctatataagcTTCTTCTTCGGGAAAACACCAAATGGTGGA-------------GTGGGAGGGCCCGGAGGACCCAGGGG-CCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGGTAGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCTGAGATCATTGACTTCTTCCTGGGTGCGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGTGCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGTCATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTCCTGATGATGGCTGGTATAGATGACTGCTACACTTCAGCCAAAGGCTGCACTGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACC----TGACCCCCAACCTCTGGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGGA-TTTTATACAAGAAAAATGAAA-GAATTAAGTCTGCTAaaagaaagaaaga
s HiC_scaffold_1 210115252 938 - 233722169 aaaatttaaagagtctTCTTCCTTGAGGAAACACCAGATGGAGGATGACGCCATTGCAGCAGTAGGACCGGGAGGTTCCAGGGGGCCCATGCATGGGAGGCCGCAGTGGCTTCTGTGGAGGCTTCTGAAGTGGCCTTCG------------AGGCCGTGGAGCTTGTGGTGGTAAGGCCGAGGACAAGGAGTG----GATTTCTGTCATCAAGCTGCACTGACTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAAAGTTTTCTCTTCTCCCTACTCATCAAGGAGTCTGACACTATTGACGTTTTCCTGGGTGCATCCCTCAAAGATGAAGTCCTGAAGATCATGCCTGTGCAGAACCAAACTCGTGCTGGCCAGGGGACCAGACTCAAGGCATTTGTCGTCCCTGGGGAATACAAAAGTCACGTGGCTCTGGATTTAAAGTGTTCTAAGGAGGTAGCCACTGCCATTCGGGGGGCCATCATCCTGGACAAACTCTCCATTGCTCCTGAGAGGAGAGGCCACTGGGGAAACAAGATTGACAAGCCCCACACAGTCCCTTGCCAGCTGCCAGGCCGCTGTGACTCTGTG-TGGTGTGTCTGATCCCCGAACCCAAAGGCACTGGGGTTGTCTCAGGCCTTATGCCCAAAGTGATGCTGCTCATAGCTGGTATTGATGACTGCTACACCTTTGCCTGGGACTGTACTGCTACTTTGGGCAATTTTGCTAAGG-CACCTTTGATGCCATCTCTAAGACCTACAGTTACCTACATGACTCCTGACCTCTAGAAAGAGACTGTGTTCACAAAGTCTCCCTACCAGGAATTCACTGACTGTCTTGTGAAAACCCACACT--AGTCTCTGATCAAAGGACTCAAGCTCCAGCGGTAGGTACAACATAAGGGTTtttacacaagaaaaataaaatgaatgaaatctgaaaaaaaaaaaaaaaa

a score=49863
s chr3            86864447 930 + 160039680 tatataag-cTTCTTCTTCGGGAAAACACCAAATGG----------------TGGAGTGGGAGGGCCCGGAGGACCCAGGGGCCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGC----AGCGGTCTTAGGGGCCGCG-----------------GTAGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCTGAGATCATTGACTTCTTCCTGGGTGCGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGTGCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGTCATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTCCTGATGATGGCTGGTATAGATGACTGCTACACTTCAGCCAAAGGCTGCACTGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACCTGACCCCCAACCTCTGGAAAGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGGA-TTTTATACAAGAAAAATGAAA--GAATTAAGTCTGCTAaaagaaagaaa
s HiC_scaffold_1 232171271 922 - 233722169 TGTGTAAGTCCTTTTCCTCGGGGAAACTCCAAATGGCAGATGAGGCTGCTGGTGCAGCGGAAGGCCTCCGAGACCCTGGGGACCCAGGCATGGGAAACCGCTGCAGCTTCCGAGGAGGTTTCGGACGGAAGTAGCCTTCGAGGCCGTGAGGTGGCAGGGCCAGGGGCTGAGGCCACGGAGCTCGTGGCGGTAAGGCCAAGGACACGGAGTA----GATTCCTGTCACCAAGCTGAGCTGGCTAGTCAAGGGCATGAAGATCAAGTCCCTGGAAGCCATCCA--GGGACTCCTTAGCCATCAAAGAGTCTGAGATTATTGACTT-TTCCTGGGCGCATCCCTAAAGGATGAAGTCTTAAAGATCATGCCTGTACATAAGCAAACTCGTGCTGGTCAGTGGGCCAGGTGCAAGGCATTTGTCGCCACTGGGGACCACAACGGTCACATTGGTCTGGGTGTA------------------GCCACTGCCATTCGCGGGGCCATCATCCTGGCCAAGGTTTCCATTGCTCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAACCCCACATAGTCCCTTGCAAGGTGAC---------------------AGTGCGTCTGATCCCTGCCCCGGGAGGCACTGGCATTGTCTCAGC-CCTGTGCC-AAGAAGCTGCTGCTGATGGCTGGTACTGATGACTGCTACACCT-GGCCAGAGGCTGTACTGCTACTCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACCTACAGCTACCTGACCCCTGACCTCTGGAAAGAGACTGTGTTCACAAAGTCTCCCTACCAAGAATTCACCCACCATCTTGAAAAAACTCACACTAGAGTCTCCATCCAAAGGATTCAAGCTCCAACAGTAGCTACAACATAAGGGTTTTtacacaaggaaaataaaaatgaatgaaattcgaaaataaaataaaa

a score=5560
s chr3            86864453 122 + 160039680 agcTTCTTCTTCGGGAAAACACCAAATGGTGG-------------------------AGTGGGAGGGCCCGGAGGACCCAGGGGCCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGG
s HiC_scaffold_1 166367392 147 - 233722169 AGCTTCTTCCTTGGGGAAACACCAAATGGTTGCTGACGCTGGCAGGTCAGGAAGGTCAGCAGGAAGGTCCAAAGAACCCAGGGGCTCAGGCATGTGAGGCCAAGGCAGCTTCTGTCCAGGTTTTGGCAGTGGCCTTTGAGGCTATGG

a score=17988
s chr3            86864455 906 + 160039680 cTTCTTCTTCGGGAAAACACCAAATGGTGGAGTGGGAGGGCCCGGAGGACCCAGGGGCCCAGGATTAGGAGGCCGCGGCAGATTCCGCGGAGAATTCGGCAGCGGTCTTAGGGGCCGCGGT------------AGAGGCCGCGGGGCTTGTGGAGGTAAAGCTGAAGACAAGGAGTGAGTGGATCCCCGTCACCAAGCTGGGCCGCCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCTATTAAGAAGTCTGAGATCATTGACTTCTTCCTGGGTGCGTCCCTAAAGGGTTAGGTTCTGAAAATCATGCCAGTGCAGAAGCAGACTCCGGCTGGCCAGCGGACCAGGTTCAAGGCTTTCGTCGCTATTGGGGACTATAATGGTCACGTTGGTCTTGGTGTTAAGTGCTCCAAGGAGGTTGCCACTGT--CATCTGGGGGGCCATCATCTTGGCCAAGCTTTCCATCGTCCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATGCAAGGTGACTGGCCGCTATGGCTCTGTGCTGGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCTGTGCCCAAGAAGCTCCTGATGATG---------------GCTGGTATAGATGACTGCTACACTTCAGCCAAAGGCTGCAC---TGCCACCCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACTTACAGCTACCTGACCCCCAACCTCTGGAA----AGAGACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTCTCTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACTATATAAGGATTTTATACAAGAAAAATGAAAGAATTAAGTC
s HiC_scaffold_1 114410564 832 - 233722169 CTGCTTCTTTGAGAAAAGAGTAAATGATGG-------TGGCCCAGGTGGGCAGGAGGCCCTG---TTGGAGACTCCAG-------------------AGCTGAGGCCTTCAGGGTCAAGGCTATGGTCAGAGCCAAGGTTGCCCAGCTCCCTGGGACCAGGCTGA------GGCATTGGTGGCTGTGCATCTCTGCGTCAGGCTGCTGGGTTGAACATAGGAAGAGCAAGTCCCTGGAGGAGAGCTGCCT-TTCCCCCTGCCCATGAAGGAGTCAG----CATTGGCTTTTTCATGGGGCCATTTGTCAAG-------------ACGTTTTGCCTGCATAAATGCAGACACATTCTGGTCCATAGAGCAGGTGT---------GCTACCATCAGGGACAATGCTGGTTGTGTGGGTCAGGATGTTCA----TTCTTGGAG--TACCCTTGCTGCATGCTAGGGTCCATTAAGGTGGTTAC-TTTGCCACCATCTCCATGCAG-GAGAGTGCTGCAGGAAGCAGCTGGGCAGGCCTCCCAGTGTG--ATGTAGGGTGACTGGCTGCTGCAGCTCTGTGTTGGTG-GCCTCCTCCCTGCTCCCAGAGGCACTAGCATAGTCTGGGTCCCTGGGCCCCAGAAGCTGCCGCCAGTGCTGGTGTCCACTGGTGCTGCTGTCCACCACTGTTACAC------------CTGCACTAGTGCTGCCCT--GCAGTTTCACCAAGGCTGCA-TTGATTCTGT-TGCTAGACATGCAGCTGTCTCATTTCTGACCTCTGGAAGAACAGACAGTGTTTGGA------------ATTGGGAATTCACTGACCAGGGCCTGCACACCCA-ACTAGAGTTTCCACACAGAGGACTCAGGCTCTAA-TGT-GCGTCCGTGTAGTGTTtttgtacaagaaaaa------aattaaatc

a score=11174
s chr3           87053911 454 + 160039680 AGCCATGCTACCCTGAGTATAATAATAACCCCCCCACACACACACACCCTCCTCACCAACAGGGCAGCTGCATTGTCAT--ACACCAGCAACACAAGACAAGCTGAGGGTTTCTTAGCTGCAGAAAGGGTTGTGAACCGATAAAGCCACACCCCCCTAAGAAGAAAGGCAGCCCACCACCAGAGCTGTAGCTTGTTGACACAGTTATTTTGGGTTCA-AGTACACACATGTTGGGCCCAGTGCACACAGACTCACAGTCTCATGGGAGTTCCCCTAGGTTCTTAGCTCACTGCTTTGCCCTTTGATTC--ATATCTGCAAAGTTTGTCAAAGAATGACCTTTGTGGATAAGCACAGAGTC----------------------------------------CTGGATCATGAACCACTGCCCCCACCCCTACTCCTGCCCCCTGGTAGCACTGCCAGATTGCAGAGACTACAAGGTGGAGATGCTTATTCTGAAGGTCTT
s HiC_scaffold_1 70980635 450 - 233722169 AGCCATGCAGCGCTGAGGGGGGCTGCAAGCCACCGCCAC-----------CGTCTCCAGGTGGGCGCC--CTTCATCATGAACGCCGGCAGCCCTGGATAAG------GTTTCAtcacttta--aatgattttgaaCCAATGAAGCTGTATCCCCTTAAAAAGAAA-------CATCGCGTGAACcatagtatgtggacagattaaTATTGGGTTCATAGT------------GGCGTAATGCTTGCAGACTCC--------TGCGAGTTCCTTTAAGTTCTTGGAGGGCTGCTTGGCCTTTTGAATCTAGGAGTTGCAAAGTTTGATAAAGAATGGCCTTTGTGGATAAGCACGAAGTCAAGCGACAGCGATTGGACAGAATTTGTGAGGTATCTGCCCCCAGATCATGAACGGCCCCTGCAAACACCTCTTCCGCCCC-TGGTGGCGTTGTTAGATGGCAGAGACTGCACCATGGAGATGCCTATCCTGAAGGACCT

a score=29732
s chr3           87054357 706 + 160039680 AAGGTCTTTGAATACAGCACCATATGTTATGATTCCCTACTTGCAGGATAGAGTAGAGTAGTCCCTGGGTGTGTGGAAGGTCTACAT-TAGCCAGACTTGCTATATCATAGAGGCTACATCTGCTTTGCACCGAAGTCTGAAGGAGCATTACCAC------ATCAACGACTTCACTATCAAGCAGATAAGGCAAGAAGTATTCCTC-TGAATG--------AGGTGCCTGGTGGATGAGAAAGCCTTAG--------TACAAAGAGTCAAGGATACCCAGGGCAGCTCTTAATGTTCATTAATCTGAGCCCTCTAGCTTCACTTGGGGTCAATTGAAAGATGCACCAAATCTCATCTGCATGCCACACGTGGCCAGGTAGAGTGAACAAGCCTCTCTAGGAATAAGGGAGGCAGCTTCTACTGAGATCCATGGAGCAATAGCAGGTCGCATCCCAGAAAGCTTACCACACTGTGTAAACAAAGAACTCTTGGTTACTTCGGCTCCTTGGCCTGTCGTAGAGTAGCAAGTAGCCCACTCCAAGCTCATCAGGTGCCCCACACCCCT------------------------GACTTCCTGCTGCCAGAG--------------------ATCACAGTGACTTACAGCCTCCTCAGAGT---ACACCGTTCCCAAGCTCCCTCT-----------CACAAAAC-----ACAACCGAGAACACCCCAAGGAGCACTAGCAGAGAATGTGGGAAGGGAATCACTCATATAAACTTGGGATCAAGAGACAGTGGAAAAT
s HiC_scaffold_1 70981490 789 - 233722169 AAGGCCTTTGGATTCAGCATCATGTTTCATGAC-CCCTACTTGCAGGATGGCATAGAACGATCCCTGGGTGTGCAGAGGGTCTACACCTTACAGGATTTGCTGTATCAGAGTGACTGTGTCT-CCTTGCACTGCAATCTCAATGAATATAACCACCACCTCATCAGTGACTTTACCATAAAGTAGATGAGGCAAAGAGCACTCCTAGTGAATGCAGCCCGAAGTGGCCTGGCAGATGAGAAAGCCTTAGCCCAGATCTTCAAAGAGGGCAGGATACGAGGGGCAGCCCTTTATGTGTACAAATCTGAGCCCTTTAGCTATGCTCAGAGTCCACTGAAAGATGCACCAAATCTCATCTGTACTCCCCACACAGCCTGGCACAATGAACAAGCATCCCTGGAGATGAGGAAGACAGCTGCTATAGAGATCCACCAAGTGATCACAGGTCGCATCCCAGAAAGATTAAGAAACTGTGTCAATAAGGAATTCTTCATCACATCAGCTCTATGGTCAGCAATAGACCAGC-AGCAATTCATCCTGAGCTCGGT-GGTGCCACATACAAGTATCCACCAGGTGTGGCTCCAGGAGGACTCATTGCAGCCATGGAAGGGATTATTCCAGTAGGCATCCCAGTGATTCCCAACTTCCCCATGGTGGCACATCCTTCCCAAGCCCCCTTTCCCAACCAGTCCACAAAACACGGGACAATCGAGAGCACCCCAACGAGCCACAGCAGGGAATACTGAAAGGTAACCATTTGGATAAACTTGAGACCAAGAGACAGTGAAAAAT

a score=30153
s chr3           87055069 693 + 160039680 ACAGAGACGTGACCCTCATATCTGAGA-GCACACTAAGGAGGCAAG----TTAGTTGTGAGTTCAGTAAAACCTTCTGATGATGCAGGGCAGAgaggaggaaga-----------agaggaagaggagggagaggaggaggaagaagaAAAATCAAAGTATTAAATTTCATACACT----GTGCTCAAATACATTTTCTCAGCTTCAGATCATCAGCTATTTTATTGAGTGGAAAGTCTTGAATTAGAAGGGCTCAGGAAGAATAATGTTGCATTTTTCCCCCCTTATATCATAGAAAACACTTTTTATGGTAACTTGTCAGATTGTCTGTGAGCAAGTTCACTTTTTTCAACATTGATAAATTCTTTTCTTCATTTGATATTTTATATGAGATCACTTCAGATATGCTGTT-GATGTGACTGATTTTAGTAAATCCTATTAGGTCTTTGTCAGCTGGTTACATCTTCTATTCCTAGGCTTTTGTGGATCACTGTCTTT--GTTTAAAAGGATAGCTTATTTAAAGCCCCTGCAAAGGTATGTTCTTGTTTTTGTGACAAAAGAA-------AAACTGCCCCAAACAGAAAACCATTGGCTTTTAGAAGTGTGTTTTGTTCTAGTGTTTCACCATTGCCATATTTGTTTATTGTAAAGGTGGGCATTTAGCACTTAGTGCAGTTTTAAATAAAAAGCAACTAAAATTTCTGTTTAAAAAGGGA
s HiC_scaffold_1 70982765 654 - 233722169 ACAAAGAAGTATCTCTCATATCTGAACCGCAGACTGAGCGGTTCAGATGGTTGGTTGTGCGCTCAGTC--------------TGCGGTTCAGATATGAGAGATACTTCTTTGTACAAAAAAAGAGG---------------------------CAAA---TTAAGTTTCACAAGCTCTTTTTACTCAAATACATTTTCTCAGTTTCAGATTCTCACCT-TTTTATTGAGTGGAAAGTCTTGAGCTGTAAgcattcaagaagaaaaatattgcattt------cCTTATGTTTCAGGAAACACTTTTTATGGTAACTTATCAGATTGTCTATGAACAAACTCAC-TTTTTAGACATTGATAAGTTCTTCTCTTCATATGATATTTTATACAAGAACACTTCAGATGTGTTATTAGATGTGACTGATTTTAACAAATCCTATTAGATTTGTATCAACTAGTTACA----------------TGTTGTGAATCATTGCCTTTTAGTTTAAAAAGATGTCCTATTTTGATCCTTTGTATAGGTACATTCCTGTTTTTgtgacaaaagaaaaactttaaactgtcccaaatagaaaataa-tggctattagaaatatgttttgttttagtgaGTTATTGTTACTGTATTTGTTTATTGTAAAAGTGGGCATTTAGCATTCAGTGCAGCTTtcaataaaaagtaattaaaatttcaaaaaaaaaaaaga

a score=4785
s chr3           87207563 281 + 160039680 CATATTTCTTTGTAAACTCTTCAGCATTCTTACAGAATTTTTTACGGTCCTTAGAGTATTCTTCAGCTAGGTCAGCCCGGAGTGGGTGCTCAGGCTGGGGGTCATTCACCAGTGCTATGAAGAACTGGATTACTT-------GGTCAGTCTTGGTGGCTGGCTTCCAGTTTTCAGCACTAATGACTGGCA-GACAGACCTGCCCCTTCTCATCGATGTTAGGGTGGTAGATCTTTGTTTTAAATGTGATCTTGGGTGGTTTGAATGGATACTCTGCTGGAAAGTTGATT
s HiC_scaffold_1 51047061 278 - 233722169 CATACTTCTGAGTCCATTCTCGAGCTATTCTGTTGTACTTTTCTCTATCTGTTTTGTAGATCCGAGCAATCTCAGGCACTAAAGGATCATCTGGATTGGGATCACACAACAGAGAACAGATGGACAAGAGTACTTTTGAAATAGTTAGT-------GCTGGAGACCACTGTG----ACTGAAGAATATCAAGACAAATGTTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTAGGTGGTTTGAAGGGATAATCTGTTGGGGAATGAATT

a score=9926
s chr3            87207599 434 + 160039680 ATTTTTTACGGTCCTTAGAGTATTCTTCAGCTAGGTCAGCCCGGAGTGGGTGCTCAGGCTGGGGGTCATTCACCAGTGCT---ATGAAGAACTGGATTAC--TTGGTCAGTCTTGGTGGCTGGCTTCCAGTTTTCAGCACTAATGACTGGCAGACAGACCTGCCCCTTCTCATCGATGTTAGGGTGGTAGATCTTTGTTTTAAATGTGATCTTGGGTGGTTTGAATGGATAC----TCTGCTGGAAAGTTGATTTCAATTCTGAAGGCTCCCTTATCATATGGAGGGTTGTCAGGAACAATAAGCCCTTGCCAAGTCAATAAATTAGCTTCATCAACCTGGATGTTACGGAAGTTTT-TCATTCCACATTTGCGGATCTCTTCAAGCTCCTTCATCAGCCTCCTGCTGGCTGccatcttggatctggtgctgctgctttccctg
s HiC_scaffold_1 190900120 434 - 233722169 ATATTTTATGGACACTTAAGTATTCTTAATCCAGGTTAGCC-AGAGGAGATGCACCAAATTGAACTGGAGCTCCAGTGCCTAACTTTAAAATTTGGTGACCCTTGGTCACTTTTTGCCACTGGCCTTCGATTTTTGGTGCACATCCTTGATAATCAAACATGCCATTTTTAATCTCTCTCGAcatatgtgatttttgttttaaatgcgATCAAAGGAGGTTTGAGTGCATACAGAATGCACCAGCAAGCTGATTCCAGTCCTGAAGTTCTCTTTATCACATGGAGGATTGGCAAGAACAGTCAGCCAATGTCACACCAAGAAATTAGTCTTCCTGGCCTCACCATGGCCACAGTTCTGTCATAGCAGGTCTTCACATCCCTTC--GCCCCAC-----ACCTGCTGCTCACTGTCTTCCAAGGTGGGATG--GCTGCTGTCTCTG

a score=4577
s chr3            87527249 120 + 160039680 TCTCTCAGCAGGAGGGCGAAAATGAAAGCAGGCTGTAGCATCGTGGAAAAGCCAGAAGGAGGTGGAGGTGAGCAG---------------AAGTTCGTCATCGTC--------GCTGATAGATCTGG-AATGTCCCTTGGTGCT
s HiC_scaffold_1 226191026 143 - 233722169 TCTGGCAGCAG-AGAGCGAAAATGAAAGCAGGCTGCAGCATTTTGGAACAACCAGGAAGAGGTGGAAGCTATCAGCTTCCTGACTGGGCCAACCTCACAGTCCTCCCTGGGCTGCTGGCAGATCCGGCCATGGCCCTTGGTCCT

a score=14289
s chr3            87527867 221 + 160039680 AGGGTATCAGTTTCCGGATTGGGCCTACAAAGCCGAGTCGTCGCCGGGCTCCCGGCAGATCCAGCTGTGGCACTTCATCCTGGAACTGCTGCAGAAGGAAGAGTTCCGCCATGTCATCGCCTGGCAGCAGGGAGAGTACGGGGAGTTTGTCATCAAGGATCCAGATGAAGTGGCTCGCCTCTGGGGCCGCAGGAAGTGCAAACCACAGATGAACTATGACA
s HiC_scaffold_1 226191090 219 - 233722169 AAGCTATCAGCTTCCTGACTGGGCCAACCTCAC--AGTCCTCCCTGGGCTGCTGGCAGATCCGGCCATGGCCCTTGGTCCTGGAGCTGCTGCAGAAGGAAGGGTTCCACCATGTCATTGCCTGGAGGCAGGGAGAGTGCAGGGAGTTTATCATCAAGGATCCAGATGAGGTGACCCGCCTCTGGGACCCCAGCAAATGCAAACAACAGATGAATTATGACA

a score=5931
s chr3            87527922 182 + 160039680 CAGATCCAGCTGTGGCACTTCATCCTGGAACTGCTGCAGAAGGAAGAGTTCCGCCATGTCATCGCCTG---------GCAGCAGGGAGAGTACGGGGAGTTTGTCATCAAGGATCCAGATGAAGTGGCTCGCCTCTGGGGCCGCAGGAAGTGCAAACCACAGATGAACTATGACAAGCTGAGCCGGGCCCT
s HiC_scaffold_1 233214568 179 - 233722169 CAGATCCAGCTGTGGCAGTTTCTGCTCGAGCTGCTG------------GCCGACCGCGCCAACGCCGGCTGCATCGCGTGGGAGGGCGGCCACGGCGAGTTCAAGCTCACGGACCCGGACGAGGTGGCGCGGCGCTGGGGCGAGCGCAAGAGCAAGCCCAACATGAACTACGACAAGCTCAGCCGCGCGCT

a score=143541
s chr3            87535507 4681 + 160039680 [encoded data, 5010 characters]
s HiC_scaffold_1 226191416 4531 - 233722169 [encoded data, 5010 characters]

a score=6507
s chr3            87554895 250 + 160039680 CTCCCCCCGCCCCAGGTCTGGCCTTCCCCGA---TTGGGCCTACAAAGCTGAGTCGTCTCCGGGCTCCCGG--------CAGATCCAGCTGTGGCACTTCATCCTGGAACTGCTGCAGAAGGAAGAGTTCCGCCATGTCATCGCCTG---------GCAGCAGGGAGAGTACGGGGAGTTTGTCATCAAGGATCCAGATGAAGTGGCTCGCCTCTGGGGCCGCAGGAAGTGCAAACCACAGATGAACTATGACAAGCTGAGCCGGGCCCT
s HiC_scaffold_1 233214491 256 - 233722169 CTCCTCTCCCCGCAGTTTCGGCCTTTCCCGTCCTTCCGGCCCGTTG-GCTGA-CCGTCCCCTTACCCGCAGGCAGTGGTCAGATCCAGCTGTGGCAGTTTCTGCTCGAGCTGCTG------------GCCGACCGCGCCAACGCCGGCTGCATCGCGTGGGAGGGCGGCCACGGCGAGTTCAAGCTCACGGACCCGGACGAGGTGGCGCGGCGCTGGGGCGAGCGCAAGAGCAAGCCCAACATGAACTACGACAAGCTCAGCCGCGCGCT

a score=13776
s chr3            87554919 210 + 160039680 TCCCCGATTGGGCCTACAAAGCTGAGTCGTCTCCGGGCTCCCGGCAGATCCAGCTGTGGCACTTCATCCTGGAACTGCTGCAGAAGGAAGAGTTCCGCCATGTCATCGCCTGGCAGCAGGGAGAGTACGGGGAGTTTGTCATCAAGGATCCAGATGAAGTGGCTCGCCTCTGGGGCCGCAGGAAGTGCAAACCACAGATGAACTATGACA
s HiC_scaffold_1 226191101 208 - 233722169 TTCCTGACTGGGCCAACCTCAC--AGTCCTCCCTGGGCTGCTGGCAGATCCGGCCATGGCCCTTGGTCCTGGAGCTGCTGCAGAAGGAAGGGTTCCACCATGTCATTGCCTGGAGGCAGGGAGAGTGCAGGGAGTTTATCATCAAGGATCCAGATGAGGTGACCCGCCTCTGGGACCCCAGCAAATGCAAACAACAGATGAATTATGACA

a score=6785
s chr3           87582668 122 + 160039680 GGAAATGTTAGGCTATACTAATCATTCAGATGTTTA----------CACTGAGCAAAGATATGGCCT----CTCCTCTGCCACCTACTGACACACATGTGACACAGCAGCCATGCCTGCAGTGCTTCTAGGGACAG
s HiC_scaffold_1 39210487 134 - 233722169 GGCAGTGTCAGGCTA--CTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=3913
s chr3           87756535 136 + 160039680 GTTTCCCACAGCCC----ACCTGAGACTGTGTTCTGGGTCGCAGGTGCAG----GGCTCCTGGCAGCTCAGACCATAGCGGCCATCCGGACAGAGGCGCTCAGTGCAGCGGTCGCCTGTGAAGCCATGTTCACACAGACACGCG
s HiC_scaffold_1 75286477 140 - 233722169 GTGTGCCACAGTCCTCGCCCGTGAAGCCCTCTTCACAGTAGCAGGTGCCGTTGAGGC----AGCGGCCACGGTCAAAGCAGTCATTGGGGCAGACGAGCTCACTGCAGTCCTCGCCTGTGAAGCCTTCCTCGCACACGCACTCG

a score=3593
s chr3            87906480 241 + 160039680 GCTGCCCCGGAGCTCGCGTCGGGGGCC----GGCATCGAGGCGGG---GGCCGCGCGAGGGCCGGAGCGCAGC--GGCGCCGCAACCGCCGCACGCGCAAACTTGGGCTCGCGCTTCCCGGCTcggcgcggagcccggggcgcccgcggccccgccATGTCGCGATCCAACCGGCAGAAAGAGTACAAGTGCGGAGACCTGGTGTTTGCGAAGATGAAAGGATACCCACACTGGCCGGCCCGGGTGAGTG
s HiC_scaffold_1 157813034 231 - 233722169 GCCGTCTCGTAGGGCGCGTCGGACACCCGGAGGCATCCTCCCCAGTCCGCCAGCTTGGGAACCAGAGCTCCGCTCAGCGCTCCAGCATCC-----------CTTTGCTGCGCGCCGCCGCGCTTTCTCCTGGGTTTTGGACCCCC-TAGCCTCGCCCC--CGAAACATGACTCGC-----GATTTCAAACCTGGAGACCTCATCTTCGCCAAGATGAAAGGTTATCCTCATTGGCCAGCTCGAGTAAGTG

a score=4182
s chr3            87913077 96 + 160039680 TTTCTTGTCCCAGATTGATGAGATGCCTGAGGCTGCAGTGAAGTCAACAGCCAACAAATACCAAGTCTTTTTTTTTGGGACCCATGAGACGTGAGT
s HiC_scaffold_1 157816486 96 - 233722169 tttttttttttaggtagatGAAGTTCCTGATGGAGCGGTAAAGCCACCCACAAACAAACTGCCCATCTTCTTTTTTGGAACTCATGAGACGTAAGT

a score=6220
s chr3            87913281 184 + 160039680 TTGAAAGCACAGTCTCCTATCTCCTATCCAGGGCATTCCTGGGCCCCAAAGACCTCTTCCCTTATGAGGAATCCAAGGAGAAGTTTGGCAAGCCCAACAAGAGGAAAGGGTTCAGCGAGGGGCTGTGGGAGATCGAGAACAACCCTACAGTCAAGGCCTCTGGCTACCAGGTGAG-CAGTTAGTT
s HiC_scaffold_1 157828681 184 - 233722169 TTGTACTCACAACCTCCCCT-TCTGTTTCAGAGCTTTTTTAGGACCAAAGGATATATTTCCTTActcagaaaataaggaaaagtatGGCAAACCAAATAAACGCAAAGGTTTTAATGAAGGCTTGTGGGAGATAGACAACAATCCAAAAGTGAAATTCTCAAGCCAGCAGGTAAGTCAGTCATTT

a score=9449
s chr3           87938569 204 + 160039680 CTAGATCTTGAAGATACTCTCAGGGAAGGTAGTGATAGGGCATGCCATTCACAATGACTACAAAGCCCTACAGTACTTTCATCCCAAGTCCCTCACCAGAGACACTTCCCGGATACCACTCCTCAACCGGAAGGCTGACTGCCCAGAAAATGTCACTTTGTCACTGAAGCATCTCACCAAGAAGCTCCTGAGTCGGGACATCCA
s HiC_scaffold_1 62198989 186 - 233722169 CTAGATcttgaaaatac----aaagaagata--------------cATCCACAATGACTTCAAAGCCCTATAGTACTTTCATGCCATGTTTCTCATCCAAGACACCTCCCACATGTACTTCCTCAACTAGAAGGGCAGTGGCATAGAGAATGCCACCATCTCTCTGAAGAATCTCACCAAGAAGCTGTTGAACCAGGACATCCA

a score=7290
s chr3           87939238 300 + 160039680 TTGGAAATACTGGACATTCCTCGGTGGAAGATGCCCAGGCCACAATGGAGCTGTACAAGTTGGTTGAAGTTGAATGGGAACAGCACCTGGCCCAGAATCCT--CCAGA--------------------AAATTAGCAATCCCAGGGAGACACATGCAGTAGACCAACCCACAGTTCTTCCAGCTTCTCACCTGCAGAAGCTAGAATCACTGGGGAGAGGGGCTTGGCCAGAGGCTTAATACCCATTGAAATTTCATCTCAGCTATTTTGGTCACTGTGTGGTTAAGTGTCTCATGGAAGAGGAGAGCTTTCATGTTAAACCC
s HiC_scaffold_1 62199178 282 - 233722169 TTGGAAAGG-TAGATGATGCTCTGTGGAAGATGCTCAGA--------AAGATGTAGAAGTTG----AAGATGAGAAAGAACAGTACCAGGTCTAGAATCCCAGCCAGATTAGTGGCTGAGAGGCAGAAAAAGTAGCA-TCCAAGACAACCA---GGAGTGGGCCAACACCCAGCCCTAGCA------CACCTATGGAAGCTGGAGTTGTTGG---------------CTCAGTCTTAATAGCTATTGTGATTTCATTTCAGCTGTTTGGTCCCATGTCTGGCTCAGAGTCTCACGGAAGA--AAAGCTTTCGTGTCAGAGCC

a score=8472
s chr3            88186738 405 + 160039680 TGCCTTTTGAAGTTCTTGTGAAGAAAAC-AGGCCCCACTCATGACTCTGTGCCAGCCAGTCTCT--GTCAAAAGGCACGGTGCA-CTTCATACAGAGTCACAGTGAACAAAGTGTTCTCTCTGCTCACTTGATCCAAGGGTGCAAGGGATTTTTCTGATAAAAGCA--------------------------------ATAAACAACTGA----TACATGCAGAGTCACAGCACCACTCCCCTCACTGGTGAGCCAGCCATGCTTAAACTGAAAAGGCGTTAAAGCATGGTTTTTAAGCATCACTCTTT-----------------------CTTCAcg-------tggtggatcatacctataaccccagca-ctggggaactgaagcag---ggttgggagtttgaggcaagcatgggctacagattgagactgtctctgaaaacaatgaaaACAAAGCCAAACggggctg----gtgaga
s HiC_scaffold_1 118217072 456 - 233722169 TGtgttcttcagctcttctgaaGAAAACTAAATCCAACCCAAACCTCTATGATTGCCAGTTTCTTTGTCAAAAGGAACAGTGCAGTTTTGTACATGGTCAAACTAAGCAAAGTATTCTCTCAGCTCATTGGATGCTACAATCCAGGGAATTTTCCTGAAGAAAGCAACCAGCCTTCATATATGCTTCATAACCAGCATATAAATGGTTAACATTTACATGCAGTGCTGTAGCA-----CCTCTTACTACGGAGGATGCCATGTTTATCCTGAAAGACCTTAGCAACTT--CTTCCCAGCCTTGTTACATACAATGAAGAAGTCAAAAGAGGACATCAAgttaggtatggtggcacatgtctataatcccagcatctgggaaactgaggcaggaagatctctagTTTAAGACTGGCCTGAGCTACA-ATAGAaactt-------------------caaggccagactggactgcatagtgaga

a score=5996
s chr3           88250613 324 + 160039680 AACCCCAAATGCTCCAGAACCACAAAGTTTTTAAACATCAGCGTGATGC-AGTAGTGGAAAATTacacacacacacacacac-acacacacacacacacacacacCCCTCATCTAATGGGCTTTA-CTCAAAACGCAGGCTCACTACTCAGGCTTCATGAAGTCACCTTCAGGCTATTTGTATATGTGGTGTATGTTGGGTATCAGTGGAATACTTGTCTAGACATGAGTTCCATCCTCAAGGTATTTCATTATGCATATATAAACATGCCCCCAACC-----------------CAAAACACTTTGGCTCCAAGAATTTTCA--TAATGAA-ATTCAACTTGTATT
s HiC_scaffold_1 11745758 333 - 233722169 aattcaaaatgctccAAAACCCAAAGCTTTTTGAGTATCAACATGATGCCACAAGCAGAAAATTCCATGCCTGACCTTATGTGACCTTGGCATATGTGAAAATGCGGGTGCACTAGTGGGATCCAGCTCA---CGGAGGAATCCTTCCCCGGCTT---------GCTTTCAGGTTATGTGTATAAG--GTGCATGTAAAACATAAATGGGTTTCCTGTTTAGATTAGGGCTCCATCCCCAAGATACTGAATTATATGTGTACAAATATTCCCACATCCAAAACAAATCAGACATTCAAAATACTTCTGGTCCCAAACATGTAAGCTAATGGGCATTCAACCTGGATT

a score=4056
s chr3            88250777 180 + 160039680 TTCAGGCTATTTGTATATGTGGTGTATGTTGGGTATCAGTGGAATACTTGTCTAGACATGAGTTCCATCCTCAAGGTATTTCATTATGCATATATAAACATGCCCCCAACCCAAAACA------------------CTTTGGCTCCAAGAATTTTC-ATAATGAAATTCAACTTGTATTCATTTTTATCATGGATGACC
s HiC_scaffold_1 112284099 197 - 233722169 ttcagcctaTGTGTATGAACTGTGTATA--AAGCACAAGTGAATTTCATATTTAGACACGAGTCTCACCTCAAAGGTATCTTATTATACATATGCAAATATTCTGAAACCTGAAAATAATGCAATATCTGAAATACTTTTGGTTCTAAGCTTTTAAGATACGGATACTCAATTAGTAACACTCTAAATTGTGATTGGCC

a score=8871
s chr3           88284586 177 + 160039680 TGCCTTTGTGTGAATTCTTACAGACCCAGCTTCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGAACCTGACTTTGTTACCAGTTTCCATCCGGATCCACTGAGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTGATTCTGAAAGTCTTGTGAGAAAAtgtcgcg
s HiC_scaffold_1 12249122 164 - 233722169 TGCCTTTGTG------------GATCCAGCTTGGTTCTTCTCCAGTGTCTTTCCTTGGCATTGAACCTGATTGTAATCCCGATTTCCACCCAGATCTCTTAGGGAATGGGGGGATTTTGGTTTTTTATCCTGACCAGAAATC-CTTGATCCTGAAAGTCTCATGAGAAGATGTGGTG

a score=8370
s chr3            88284588 175 + 160039680 CCTTTGTGTGAATTCTTACAGACCCAGCTTCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGAACCTGACTTTGTTACCAGTTTCCATCCGGATCCACTGAGGAATGGGACG-ATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTGATTCTGAAAGTCTTGTGAGAAAAtgtcgcg
s HiC_scaffold_1 233246261 176 - 233722169 CCCATGTACAGTTTTGTGTAGCTGCAGCTTGGTCTTCCTCTAGCATTTCCTCTTGGAGTTGTACTTGATTTTGTTACCAGTTTTCAGGTGAATCCATTGAGGAAGGAgatgttttttgcttttgcttcttggATGTGAACTGTTTGATGCTGAAAGTCCTATGAGAAGACATCATG

a score=9204
s chr3            88284593 161 + 160039680 GTGTGAATTCTTACAGACCCAGCTTCGTTCTCCTCCAGTGTCTTC-TCTTAGAGTTGAACCTGACTTTGTTACCAGTTTCCATCCGGATCCACTGAGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTGATTCTGAAAGTCTTGTGAGAA
s HiC_scaffold_1 171540805 161 - 233722169 GTGCAATTCCTTACAATTCCGCCTCGGTCCTCCTCCAGTGTCTTCCTTTTGGAGTTGTCCCTGATTTTGTTACCAGTCTTCATTCAAATTCATTCAAGAGTAG-ATGATTCTGATTTTGCTTCTTGGCCAGGAATCTTTTGATTCTGAAAGTCTTGTGAGAA

a score=10782
s chr3            88284598 161 + 160039680 AATTCTTACAGA-CCCAGCTTCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGAACCTGACTTTGTTACCAGTTTCCATCCGGATCCACTGAGGAATGGGACGATTTTGCTTTTGTTTCTTGGCCAGGAATCGCTTGATTCTGAAAGTCTTGTGAGAAAAtgt
s HiC_scaffold_1 114989369 162 - 233722169 AATTCTTACATTTCCCAACTTGGTCCTCCTCCAGTGTCTCCTCTTGGAGTTGTACCTGATTTTACTACCAGTCTTCATCCAAATCTACTGAGGAATGAGACGATTCTGCCTTTGCGTCCTGGCCAGGAATCACTTGATTCTGAAAGTCTTGAAAGAAGACAT

a score=11949
s chr3            88389790 1151 + 160039680 CCTATAGGAGTCTATGGACCCTTGCCATCTGACTCTATGGGTCTTGTTTTGGGTCAGAGTTCCACATCTTCTCAGGGGATTCATGCGATTCCTGGGGTTATTGATGCTGACTAGATTGGTGAAATTCGGGTTATCATAGCTCCCCATCATTACACCTTACAAATTCATTCAGGACAAAGAACTGCTCAGTTGCATCTCCTTCCATTGATTAGGAAA---GGAAATTTTATTACTGCCCTAGAAAGAGGCGATACTGCCTT--TGGGTCTAGTAATATGATATTTTGGGTACCAGAAATTACTAAGACAAG------ATAACTTTATTGGTACAGGGAGCACCTATGGAGGGATTGCTAGACATAGGAGCTGATGTTTCATGTTTCAGGAA--AGGATTGGCCCAATGCCTGGCC--AACTCAGGTAACTGCATCCAATTTAACTGGAGTAGGCCTGGCCTCTAATGTGGCTTGTAGTTCAAAGATCCTTCATTGAAAGGATAGTGAACATG--CAGGAACCTTCCGGACTTTGATCATTCCTTCAT--------TGGCCTTTACACTCTGGGGAAGCGATGTATTGGATCAGATGGGTACCTTTTTGATTTCCTCCAAGGATCCAGTGCTGTTGCAAATACAAAAAGAATGGGTTTTGAACCTGGAAAGGGTCTAGGAAATAAT-TTGCAGGGATAG--GGTCAGTCCATACTCCCAGACAGAAACAGAAGAGACATGGCTTGGGATCCTCCTCCTCCTCCTCTTTTTTTTTTGAGGGTGGGGTAGGTTGCTGATGTTACA-GCTGATAAAATCTCTTGGCTTTCTGATCagccagtttgggttgatcagtggcccattaatggagaaaagatccaggccgcctatgaattagtgaaacaacagttatagcagggacatataaaggaatcaacgagt--ccagggaatactcctatttttgtaattgaaaagaaatcaggaaaatggagattgttacaagacttaagaaaggttaatgaagctatggaggccatgggg-cgttgctgcctggcctcccatcccccagtgttgttcctttgggatattccctttttgttatggatttacaaggttgttttttcccctattcctcttcatcctgatgataggaagcattttgctttt--tttgccttcagtaaactt
s HiC_scaffold_1 204803695 1130 - 233722169 CCCTTAGGAATCTATGGGCCCCCTTCCCCCGGGACTTTTGGACTTATTGTTGGACGTAGTAATACTACGCTTAAAGGATTACAAGTTCTGCCTGGGATAGTAGATAGTGATTGCACAGGGGAAATAAAAGTCATGGCTTCTCCCCTTGTTGGCATCATACCAGTCAGGGCAGGACAACGCCTTGCTCAATTGCTGCTATTGCCGTTGACCTGAACGTCTAACAAATCCATAACTCCCTCC-----CGGTGGGACTCCATTCCTGGGACTTCAGATGT-ATATCTC---------------CAAAGAAAAGCCCTTTATGACTCTGTATTTAGATGAAAAAAGTTTCTCAGGCCTCATTGATGTGGGTGCATATGTTACCATTATCAAAAAGGAGGAGTGGCCTGCTGCCTGACCTTAA---AAACAACTTTAACACACCTCCAAGGGATTGGACAATCAAAAAATCCACAACACAGTTCCAAACAACTTGTTTGAAGAGATCAAGAAGGTAATCAGGGATATCTACAACCTTA-------CGTCATAGAGAGTCTGCCTCTTAATTTATGGGTAAGAGACTTACTCTCCCAAATGGGACTAATTACGGGAAGCCCTAATAATGTTGTCACAGTGCAAATGCTTAACAA--GGGCTACCTGCCAAAACAGGGCTTAGGAAACAATAACACAGGCATTACTGATCCCATCATTGCCACCCCTAACAATGCCAAAGCCA-GGTTAGG------------------CCATTTTCCATAGGGGCCCTTTGACACTCCTGTGATCCATGCAAAACAAATTATGTGGCTATCAGAAGAGCCCATATGGGTCGATCAATGGCTCCTTACCTCTGAAAAACTTATGGCTGCTcaacagctggtgcaggaccagttaaaTGCAGGCCACATAA--TACCTAGTGATTCACCATGGAATACTCCCATttttgtcataaaaaaaaaatcaggtaaatGGAGACTACTACAAGACCTCAGGGTGATAAACAAGACTATGGTCATAATGGGACccttacagccaggcctcccttcacccagtgcTATACCTTTAGgttattttaaaagtgttatagatcttaaagattgcttttt-ttctattcctgtgCATCCAGATGACCAAAAATGCTTTGCCTTTAGCCTTCCATCAATTAATTT

a score=16506
s chr3           88389790 1166 + 160039680 CCTATAGGAGTCTATGGACCCTTGCCATCTGACTCTATGGGTCTTGTTTTGGGTCAGAGTTCCACATCTTCTCAGGGGATTCATGCGATTCCTGGGGTTATTGATGCTGACTAGATTGGTGAAATTCGGGTTATCATAGCTCCCCATCATTACACC-TTACAAATTCATTCA-GGACAAAGAACTGCTCAGTTGCATCTCCTTCCATTGATTAGGAAAGGAAATTTTATTACTGCCCTAGAAAGAGGCGATACTGCCTTTGGGTCTAGTAATATGATATTTTGGGTACCAGAAATTACTAAGACAAGATAACTTTATTGGTACAGGGAGCACCTATGGAGGGATTGC-------------------TAGACATAGGAGCTGATGTTTCATGTTTCAGGAA--AGGATTGGCCCAATGCCTGGCCAACTCAGGTA--ACTGCATCCAATTTAACTGGAGTAGGCCTGGCCTCTAATGTGGCTTGTAGTTCAAAGATCCTTCATTGAAAGGATAGTGAA---CATGCAGGAACCTTCCGGACTTTGATCATTCCTTCATTGGCCTTTACACTCTGGGGAAGCGATGTATTGGATCAGATGGGTACCTTTTTGATTTCCTCCAAGGATCCAGTGCTGTTGCAAATACA-AAAAGAATGGGTTTTGAACCTGGAAAGGGTCTAGGAAATAAT-TTGCAGGGATAGGGTCAGTCCATACTCCCAG--ACAGAAACAGAAGAGACATGGCTTGGGATCCTCCTCCTCCTCCTCTTTTTTTTTTGAGGGTGGGGTAGGTTGCTGATGTTACAGCTGATAAAATCTCTTGGCTTTCTGATCagccagtttgggttgatcagtggcccattaatggagaaaagatccaggccgcctatgaattagtgaaacaacag-ttatagcagggacatataaaggaatcaacgagt--ccagggaatactcctatttttgtaattgaaaagaaatcaggaaaatggagattgttacaagacttaagaaaggttaatgaagctatggaggccatg-gggcgttgctgcctggcctcccatcccccagtgttgttcctttgggatattccctttttgttatggatttacaaggttgttttttcccctattcctcttcatcctgatgataggaagcattttgctttt--tttgcc-ttcagtaaacttacaaagaccttacaa
s HiC_scaffold_1 53682627 1160 - 233722169 CCTACAGGAGTTTTTGGGCCCCTACCAAAAAATACATTCAGCCTTATAATGGGATGCAGCAGCACAACGCTTAATGGGCTACAGGTTTTTCCAGGTGTAGTTGATAATGATTATTCTGGAGAAATAAAGGTCATAGCATCCTCACCTAAATACACCACTACTA--TCACTTATGGACAAAGCTTTGCTCAGTTACTACTCTTGCCTCTAATTCAAACCTCTAATAAAATAATCTCCCAACAATGAGGTAATAAAGGATCTGGATCT--TCAGATG-TCTATTGGACAAAAGTAATTTCCA--CTCAGAAACCCCTTATGTTA----------TTATGGCTGGATGGTAAAAAATTCTCTGGCCTTATAGATATAGGTGTGGATGTCACTAGTATAAGAAAGCAAGACTGGACTCCTGCCTGGCC--CTTAGatattactttgactcatttaaaagGCATAGGTCAAAGCCAAAACCCAGAGAAAAGTTCAAAACTTCTGACCTGGAAGGATAGAGAGGGCAATCAAGGCACAATACAGTCATATGTCATAGCTGGATTACCAATAAATCTTTGGGGTAGAGATCTACTGGCACAAATAGGGTTAATTATAGGTAGCCCAAATA--CCATTGTCACTGCTGAAATGTTAAATAATGGATATT-CACCTGGTATGGGCcttggaaaaaataatacaggaaT-GACAGAGCCCATAAAGACAGTACCAAAAACAGACCAAGC-TGGATTGGG-----------------CCATTTTCCATAGGGGCCATTGACACTCCTGTGATCCATGCAGAAAAAATTATGTGGCTGTCAGAGGAGCCTGTATGGGTCAATCAATGGCCTCTCACCTCTGAAAAGTTAGTGGCTGCACAACAACTGGTGCAGGAACAGCTTAAAGCAGG---CCATATAGTACCTAGTAATTCCCCATGAAACACTCCCAtctttgtcattaaaaagaaatcaaggaaatagTGATTTCTTCAAGACCTTAGAGCAATAAACAAGACTATGGCCTTGATGAGAGCCTTACACCCAGGCCTCCCTTCACCTGCTTCTATAGCTTTGGGCTATTTTTAAATCGTCATAGATCTCAAGGATTGCTTTTT-TACTATCTTCCTACATCCAGATGATCAGAagcattttgcttttagtttaccAGTTATTAATTTTAGAGAACCCATGCAA

a score=11727
s chr3            88428911 295 + 160039680 GCCATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAA--------------------GTGCTACCAACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAG
s HiC_scaffold_1 133881155 306 - 233722169 GTCATCTTT--GTAATTTGCTGAATTGATCAGTGTAAAGGGAAAAATGAGAGGATCCCAATGTATGTTCTCTAGGCCTTTTAGAAAACATTGAGTT-------TGGCCACATACATGTGAACCCATATAAAGAGTTATATTGCAGACGTCAGGGCAGTGGATACTGTTAACAAAGGAATGCCATACAAAGGAAATCATGACAAAAGTGGAGGTTCCTATGGTATTACACAGTATATTTTTTGCATTGTTATTAACAACCAAGATAAAGGGAAAATTCTTGATAAGAGAATTAATGTGTATATTAAGTATAGTAAG

a score=28695
s chr3            88428911 487 + 160039680 GCCATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA---------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAG-AGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTAA
s HiC_scaffold_1 152995918 506 - 233722169 GCCATCTTCCAATAATTTGCCAAAATGATGAACATGAAGGGACAGAGGAGGGGAACCTGATATATGTTCTCTAGGCCTTTTAGAAAACATAGGATTGTTTCTT-GGCTACATACATGTGAATCTACAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTGTGCAAAAAGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACT--ATATGCTGTTGATATTGTTGTAAACAAGAAACTTAAGGGCAAGATTCTTGCCAAGAGGATTAATATACGTATTGGGCACATTAAACATTCAAAGAGTCATGATAGCTTCCTGAAACATGTCAAGGAAAATGATCggaaaaagaaggaagccaaagagaaaagTACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTGAACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=27270
s chr3            88428911 486 + 160039680 GCCATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAG-GGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA--------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTA
s HiC_scaffold_1 217546910 497 - 233722169 GTCATCTTCCAGTAATTTGCCAAAATGATGAACATGAAGGGAACGGGGAGGGGAACCCAGTATATGTTCTTTAGGCTTTTTAGAAAACATGGGGTTGTTCCTTTGGCCAAACACATGAGAATCTACAAAAAACAGTGATATCATAGACATCAAGGGAAAGGGTAATGTGCAAAAAGGAATGCCACACAAATGGTACCACGGCAAAACTGGAAGAGTCTACAGTGTTACCCAGCATGCTGTTGGCATTGctgtaaacaagcaagttaaGGGCAAGATGCTTGTCAAGAGGATTAATGTGCATACTGAGCATATTAAACACTC--AGAGTTGTGATAGCTTCCTGAAATGTATcaaggaaaatgatcagaaaagtaaaaaagacaaagagaaagttACCTGGGTTCAACTGAAGTGccagccagccctgcccagggAAGCACACTT--------CCAGTGGAAAGGAGCCTGAGTTGCTGGTACCCATTCCCTATGCATTCACTGCAta

a score=28965
s chr3           88428913 485 + 160039680 CATCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAACATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAAAGGAATGCCCCATAAGTGCTACCA------------------------ACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTAA
s HiC_scaffold_1 55447203 509 - 233722169 CATCTTCCAGTAATTTGCCAAAATGATGAACACAAAGGTAAAGAGGTGGGGATCCCAATATATATTCCCTATGTCTTTCAGAAAACATGGGGTTGCTCCATTGGccacatacatacaaatatacaaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGGAATGCCACACAAATGTTATCATGGCAAAACATCATGAAAGAGTCTACAGTGTGACCCAGCATGCTGTTGGCATTGTTGTAAACAAGCAAGTTAAGGGCAAGATACTTGCCAAGAAGATTAATGTGCATATTGAGCATATTAAACACTCAAAAAGTCACAACAGATTCCTGAAATGTCCCAAGGAAAAtggtcagaaaaagaaagaagccaaagagaaaggCTCCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAA

a score=15650
s chr3            88428915 483 + 160039680 TCTTCCAGTAACTCACCAAAATGACGAACACAAAGGGAAAGAGGAGAGGCACCCAGTACATGTTCTCTAGGCCTTTTAGGAAA-CATGGCGTTGTTCCTTTGGCCACATACCTGCGAATCTACAAGAAGGGTGATATTGTAGACATCAAGGGAATAGGCACTGTTCAAAA-------AGGAATGCCCCAT-----------AAGTGCTACCAACAATGTCACCCAGCATGCCGTGGGCATCATTGTCAACAAGCAGGTTAAGGGCAAAATTCTGGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCACTCAAAGAGCAGAGACAGCTTCCTGAAGCAGGTGAAGGAGAACGACCAGAAGAAAAAGGAAGCCAAAGAGAAGGGCACCTGGGTGCAGCTGAAGCGCCAGCCTGCGCCACCCAGAGAAGAACACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTAA
s HiC_scaffold_1 201300708 435 - 233722169 TCTTCTACTAATTTGCAgaaatgag------aaagggaaaaa--------accTG--AGGTGTACTTTaggccttttaaaaaaacatgggGTTGTTCCTTTGGCCACGTATATGTGAATCTACAAAAAGGATGGGATTGTAGA---CAAGGGAGTGGGTACTGTCCATAAGAATGCCAGAGATGTCCCATGGTCAGATTGGAAGAGC-ATTTACAGCGTCACCCAGCATGCTGTTGACATTGCTATAAGCAAGCAAGTTAAGAACAAGA-TCTTGCCAAGAGCATTCATGTGCACACTGAGCATATTAAGCACTCTCAGAGCGCAGATCACTTCCTGAAATGCAT---------------CAagaaaaaagatgacaaaaagaaa-----------------gaaatgccagCCTGCA--GCCCAGAGAAATACATCTTGGAAGAACCAATGGGAAGGAGC---------TGGAGAC---TCCCTATGAATTCAAGGAATAA

a score=4504
s chr3            88429330 68 + 160039680 ACTTTGTGAGCACTAACGGAAAAGAGCCTGAGCTGTTGGAGCCCTTTCCATACGAATTCATGGCCTAA
s HiC_scaffold_1 156299431 68 - 233722169 ACTTTGTGAGCACCAAAGGGAAGGAGCCTAAGTTGTTGGAGCCTGTTCCCTATGAGCTCATGGCAtaa

a score=16886
s chr3            88474569 585 + 160039680 ACAATACAGCCAGGATGGCTAAAGGTGACCCCAAGAAACCAAGGGGCAAGATGTTTGCTTATGCTTTCTTCATGCAGACACGCAGGGAAGAACACAAGAAGAAAAACCCAGAGGTTGCAGTCAATTTTGTGGAGTTTTCCAAGAAGTGCTCTGAGAGGTGGAAGACCGTGTCTAGCAAAGAGAAATCAAGAGTTTGATGAAATGGCAAAGGCAGATAAAATAAGCTATGATTGGGAGATGAAAGATTATATAGCAGCTAAAAGAGGCAAGAAGAAGGA-------CCCAAATGC-CTCAAAGGACCTCCATCTGGATTTTTCTTATTCTGCTCTGAATTCTGCCCCAAGATCAAATCCACAAACCCTGGCATCTCCATTGGAGATG-TGGTAAAAAAAATCTGGGTGAGATGTGGAAGAACTTGAGTGAGAGTGAAGCAGCCTGCGTCACTA----------AGGCAGCAAAGCTGAAGGAGAAGCATGAGAAGGGTGTCGCTGACTGTCAGTCTAAAGG--GAAGTTTGAGGGGGCC-AAGGGGCCTGCTA----AAGTTGCCCAGATAAagg--tggaagaggaagaggaggaggaagaggaagaTGATGA
s HiC_scaffold_1 116889505 597 - 233722169 ACATCATGGTCAGGATAG---------GCCCCAACAAACCATGGGACAAAGTGTATGCCT-TGTATGCCTTGTGTAGACCTGCTATGAGGAGCACAAGAAGAAGCACCCTGACTCCTTGGTCAACTTTGTGAAGTTTTCCAAGAAGTGCTTGGAGGGATGGGAGACCATGTCTGCCAAGGAAAAGTTGA-AGTTTGAAGATACGGCAAAAAGTGATAAAGCTTGCTATGACAAGGTGGTGAAAAATTATGGTCCTCCCAAAAATGgtgatgagagaaaaaaatttcctaaatGCTCCTAAAAGACcaccatctttcttttttctgttttgctctgaaTATTGCCCAAAGATCAAA--AGTGAACACAGGCCTGTCCATTGGAGATACTGATGAAAAAGAAAGGTGGGAGATGAAATATGGTCTGAGC---AGTCAGCCAAGGTAAACAACTATATGAACAACAAGCAGCTAAGCTAAAAGAGATATATGAAAAGGATATAGCTGCATATCATGCCAACGGCAAAAGTCTAGGAGGAAAGAAGAGTCCTGATAGCCCAATAGGCTCAAAATATGAACCAGAAGAttgaggaggagaggaagaagatgaTGATAA

a score=6515
s chr3            88484922 206 + 160039680 TCACCTCTCCTCCTCGCCCTCCAGCAGCTTTCGATAGGCATGGATCTCCATGTCCAGGGCCAGCTTGATGTCCAGCAGCTCCTGGTACTCGTCCAGCT-----GCTGCTGCATCCTCGC----CCGCATCTCCGCCATCTCTCGCTCTTTCTCAGCC-AGCAGGCGCCGGCTGGTATCGCGCTCACGGGCCAGCGAGTCCTCCAGGTCACGCAGCT
s HiC_scaffold_1 232816554 206 - 233722169 TCACCGGCTCTCCTCGCCCTCCAGCAGCTTCCGGTAGGTGGCAATCTCCACGTCCAGGGCCATCTTCACATTGAGCAGGTCCTGGTACTCGCGCAGGTGTCGGGCCATCTCATCCTTGAGGTGCCGGATCTCCTCCTCCAGGCGTGCAATGTTGTCCTGGTAGCCGCTGGC----------CTCACTGGCAAAGCGTTCCTCCAGCTCCCGCATCT

a score=5223
s chr3            88502731 282 + 160039680 GCCGGGCCTCACTCACCGAGCCTTCAGCTCCTTGAACTCCTCACGCACTTTGCTCAGCTCTAGCTGGAGGCGGGCGCGCTCCTTGGCCACAGAATCAAGGGTCTTGCGG-GCA--TCCCCCAGCTCGGCCTCGTAGGCCGCCTTGATGCCGGACACCTCTCGGCTGACCACCTCTTCAGACTCAGTGATGCGAAGGCGCAGCCCCGCGTTCTCGGTCTCCAGGGAACGCACGCGATCGATGTACACGGCCAGGCGGTCATTGAGCTCCTGCAGGTCCTCCTTCTC
s HiC_scaffold_1 232819077 270 - 233722169 GCAGGGCC---CTCACTTGGCCTTGAGTCGCTGCAGGTCGTCGATCAAGTTGTCGCGCTCCACGTCCACGCGGGCGCGCTGGTTGGTGAGCACCTCCA---CCTGGCGCCGCAGTTCGCGCAGCTCCTCCTCGTAGAGCTCGGCGACACGCGTGGGCTCGCGGCC--------CTTGAGGCGGTTCACCTCGGCGGCG-AGCGCGGCGTTCTGCTGCTCCAGGAAGCGCACTTTCTCGATGTAGTTGGCGAAGCGGTCATTGAGCTCCTGCAGCTCCACCTTCTC

a score=19016
s chr3            88576240 374 + 160039680 TTTTACTTCCCCAA-CTTTATTAAAGAAAAA--GCAGC--GGTGGTAAATCTCTAGAACATGGTCAATCTCCTGGGGTTCTCCCTTCCAAGTGTGACATCTGATTTCCAAGCACATGCTG---GTGTAATGGTTCCCATC---ACTAGGCAGGTGAGAAGCTGACATCCTCATGTGCTCATCTCCCAACTTTCCCCAGTCTGTGGTCTGTCTTTGGATCAGCAATGATGGCCTGGACGGCTACTATGGCTTCATTAATTTTTGTCTGTAGCTCTCTGAGCTCTTCTATGTGCAGCAACCGCAGGATCTGAGCAGCTTCATTAAGAACTGCAT-----------------------------------------------------------------------------------------------------------CGCCTGTGTCAAAGCCAAGAATATGTTTCCCTAAAGCAACAGGTAAGCCCTCT
s HiC_scaffold_1 201197246 483 - 233722169 TTTCACTTTCTTAaactttattaaagaaaaaaagtaacttggTGGTAAATTTCTAGAACATAGT---TTTCTTGGATTCCTCCCTCAAAAGTG----ATTTGATTTCCAAATACATGCTGAAAGTATAG-AGTTCCCAACTGTACTAATCAGGTAAAGAGGCGAAGTC-TAACGCGTTCATCTTCCAACTTTCCCCAGTCTGTGGTCTGTCTTTGGATCAGCAATAATTGCCTGGACAGCTACTATGGCTTCATTAATTTTTGTCTGTAGCTCTCTGAGTTCTTCTATATGTAGCAATCGCAGAATTTGAGCAGCTTCATTAAGAACTGCATCTGTTTTATAAGAAAAGAACACTATATTAAtacataatttttgtattttatttcccaaattttaccaaatctttttaaatagtctgaattaaaacaaaatcacttACCTCCCGtgtcaaaaccaagaatatgTTTGTCTAAAGCAACAGGCaaacccttt

a score=6384
s chr3            88576609 75 + 160039680 CCTCTTTTGTTTGATTTGCTTTAGCAACTGCATCCTGTGTTAGACGTTCCTGAACCAAAATGCGAATTGCCTTAA
s HiC_scaffold_1 201199936 75 - 233722169 cctcttttgtttgatttgcttTAGCAACTGCATCCTGTGTTAGGCGCTCTTGAACCAAGATGCGAATTGCCTAAA

a score=7598
s chr3            88576660 109 + 160039680 GAACCAAA---ATGCGAATTGCCTTAAGCATTACCAAGTAGTCATCATGATGCTGAATCTGAAGGAGGTTAGCCAGAGCCATGACACCCGCCTTAAAATCAGGATTATTTAC
s HiC_scaffold_1 201201639 112 - 233722169 GAATCAAAGCTATGAAACTCACCTTAAGCATTACCAGGTAATCATCATGGCGCTGAATCTGAAGGAGGTTAGCCAAAGCCATCACGCCAGCCTTAAAGTCAGGATTATTTAc

a score=8476
s chr3            88576855 112 + 160039680 CGTTATCTCCATATTCAAGTCTAACAGCTAAACCAAGAAGCCAGTCAATTGCTTCTTGCTGATCCTGAATCTTGAAAGGACAGTTAACATCTTTGAGATACTTTTCAAAGAA
s HiC_scaffold_1 201206785 112 - 233722169 CATTATCTCCATATTCAAGTCTAACAGCTAAGCCTAGGAGCCAGTCAATTGCCTCTTGTCGATCCTGAATCTTGAAAGGACAGTCAACATCTCTGAgatactgtgaagaaaa

a score=10933
s chr3            88576955 127 + 160039680 CTTTTCAAAGAACTTGGGCCAGTCACTGCTGTGGATGTTTCTCAAGTTACCTCTGTCTTCAATCTTGTAGTGTCTGATTTTCTGGTCTTCAAGCCAAACGTTAAAGTTTCTAAATTCTGTTTCATCT
s HiC_scaffold_1 201209136 127 - 233722169 CTTTTCAAAGAACTTGGGCCAGTCACTGCTGGGGATGTTTCTTAAATTACCTCTGTCTTCAATCTTGTAGTGTCTGATTTTTTGGTCTTCGAGCCAAACAATAAAGTTTCTAAATTCTGTTTCATCT

a score=8283
s chr3            88577073 132 + 160039680 GTTTCATCTTTGCATTTGAAGCCTGAGGGGTTGTGGTAATCCAGGGCCGTGAGCTTGCGTCGGAACATGGTCCCCGCTGCTCGCGCTGGCCGCCCGGGCCACCGCTGGGACAGGagaagcaaggtgaggcag
s HiC_scaffold_1 201210735 132 - 233722169 GTCTCACCTTTGCAGTTGAAGCCGGCAGGGTTGTGGTAGTCGAGAGCCGTCAGCTTGCGTCGGAACATGGTCCCCGCTTCTCGCTGGGGTCCCCCGGGCCTCCTCCGGGAGAGGAGAAGCGAGGGTGAGCAG

a score=6808
s chr3           88719486 187 + 160039680 GTTATGTGCCTCCTTTGTTTTGGT-TTCCTATACAGGTTTGTAGAACAA------TCAAAATAGGCAGAATTTTCTTTGGCCGTGTCCAATG---TTGTCTGTTTTCTTGTGC----TGTGATGTAATCCTGAGCAACTGCTCAGGGCTCATCTCTACCTCATTAACAGGCACCACTGAT--AGTCTTTTATGTTAGCATGGT
s HiC_scaffold_1 11787355 203 - 233722169 GTTGTGTGTTTCttacctttttctgtttgttcccAGGTTCTTAGAACTTCAGCTTTCAAAATGGGAAGAATTTTCCTTGATCATATTGGTGGCACTCGACTGTTTTCTTGTGCAAACTGTGATACAATCCTGACCAACCGCTCAGAACTCATCTCTACTCGATTCACAGGCGCCACTGGTAGAGCGTTTCTTTTTAACAAGGT

a score=4393
s chr3            88726244 239 + 160039680 CAGCGATGCATTCTGGATCTTTTGTTTCCTTCTAG----GCAGAGTTTACAGCCATGCGGGATCAGTATATGAGGGCAGGAGAAGGATTCATCATCTGTTACTCCATCACGGATCGTCGAAGTTTCCACGAAGTTCGGGAGTTTAAACAACTGATTTACCGGGTCCGACGCACCGATGATACACCGGTGGTTCTTGTGGGGAACAAGTCTGACCTAAAGCAGCTGAGGCAGGTGAGGAAGGAA
s HiC_scaffold_1 154272976 243 - 233722169 CAGCAGTGTATGCTTGGAATTTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGAGATTTATACATGAAAAATGGACAAGGCTTTGCTTTAGTTTATTCCATCACAGCACAATCCACATTTAATGATTTACAAGATCTGAGAGAACAGATTCTTGGAGTTAAAGACACTGATGATGTTCCCATGATTCTGGTTGGTAATAAATGTGACTTGGAAGATAAAAGAGTTGTAGGAAAGGAA

a score=8349
s chr3           89049001 125 + 160039680 TTAGGCTACTAATCATTCAGATGTTCACAGGTCAGAATACTGGGC--AGACATAGCCTCTCTTCTCTCTGCCACCTACTGACTCACATGTGACACGGCAGCCATGTCTGCAACACCTCTAGGGACAG
s HiC_scaffold_1 39210494 127 - 233722169 TCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGGCAG

a score=8039
s chr3            89241390 356 + 160039680 AGGGCACTGTATTTGTGAAGAAATGATGGGATACGTGGATTTACGGGCTGGAGTAG-----TCGATCCTAACCATGTTGCTAAGAGACAAACAGGGAA-AGGCTAAAAACTAGTGGACGTTAAGAGCTCCTTTAAATAGCTGGTCATTTGAATACATCGCAGCCCTAGTTTCCAGGATCCGTCAAACAAGACTGTGCTGGGGCCTCAGTGTGTGAAGGAGGGCCTTTT----CCAAAATACCC-----GCCTATCTGGATACATGTCAGAAAATGCAGT--AACTGCCCTTTCTGAGCCTACAGTTTGTCCAGCAACTGCAACTTGAAATCACCATTACACTAACTGCTCATATTTTA---------CCCTAGCTCTTTCAT
s HiC_scaffold_1 139016737 373 - 233722169 agaacaatatatttgtgaagaaatgacATGATAAATGGATACTTGGATGAAGGTAGCAAACTCTATTCTAGAGATGTTACTAAAAGACCTATGGGAAATGGGGTAGAAGCTAGTGGAAGGTAAGTAATACTTCAAACAGTTTGTCTGTTGAGTCCATTACAGTTTCAAATACCAGTCTCTGGTGACCAAGGCTAATTTCAGGCCCTAGAATGTGAAAG------TTATACCACCAAAATAACCTTTATGACTTACTGCATATAGG---GAAAGAACAATCAAAAGGCTCTTTCTAAACTTAAATTTCCTCAACTGATTTCAGCATGAAACAACCAATATTCAAATTGGGGACCTTTTGATGACACATCTTTAACTCCTTCAT

a score=3790
s chr3           89310214 83 + 160039680 TTTGTTTCTGT-TGGTTTTGTGAGGCTGAGAATCAACCCCAGGACCTCATGCATCCTAAGCGAGTGTTCTCCCACTGGGCTACA
s HiC_scaffold_1 28928275 84 - 233722169 tttatttctttctccttttgcagTGCTAAGAATCAAACCCTGGACCTCGTGCGTGCTAAGTGAATGCTGTACCCTTGGGTTACA

a score=3990
s chr3           89379819 156 + 160039680 GTCCTCCTTGGCGAAGGCCTTGTGGCACAGGTGGCACTCATAGGGCCGGTCCCCGGTGTGCAGGTGCATGTGGTTCTTGAGGTCGTAGCTATGCAGGAAGCGGGCTGGGCAGTGGGGGCACGAGTAGGGGCGTTCTCCTGTGTGCTTCCGCATGTG
s HiC_scaffold_1 42402077 156 - 233722169 GTCCAGCTGCGAGTAGGCGCTCTGGCACACCTGGCACTTGTAGGGGCGCTCGCCCGTGTGCAGGCGCACGTGGTTGCGCAGCGTGGACGACTGGCTGAAGCGGCGGTTGCAGAAGCGGCACACGAAGGGCTTGTCCAGCGTGTGGATGCGCATGTG

a score=4785
s chr3           89381332 153 + 160039680 GAAGTAGTGGCTACAGGCAGCCAGCACAGCCCTGTGGGTGCGGTACTCAAGACCCTGCGTCCTGATGGTGAGGTCGCACAGATGGCCCAGCTGGCGCTGCTCGTTCAGGCAGCTCAGGAGCTCGCTGCTGTGGTCTGGGAAT--GGGATTCCAAT
s HiC_scaffold_1 38788884 147 - 233722169 GAAGTACAGGCTGCTGGCGGCCAGCACGGCCCGGTGCGCCTTGAAGGCCTGGCCCTTGACCACGATGGACACATCGCAATAGAGGCCCAGCAGCCGCTGCTCGTTCAGGCAGCCCAGCA--------CGGTGTTCCCGAAGTTGGGGATCTCAAT

a score=3962
s chr3            89422896 108 + 160039680 TGATCCATTCTTCCCTCCTTCCCCTACAGTACATGGGCTGTGTGGAGGTCTTACAGTCAATGCGAGCCCTTGACTTCAATACCCGGACTCAGGTCACCAGGTTAGTGG
s HiC_scaffold_1 191487146 107 - 233722169 Taatcc-tccttttttcttcttattctagTACATGGGCTGCATTGAGGTGCTGCAGTCAATGAGGTCCCTGGATTTTGGAATGAGAACTCAAGTTACAAGGTAAGAGG

a score=4113
s chr3            89424185 64 + 160039680 TCAGATCATTGCCAACCATCACATGCAATCTATCTCTTTCGCGTCCGGTGGGGATCCGGTGAGT
s HiC_scaffold_1 191524115 64 - 233722169 tcagATAATTGCAAGTCATCATATGCAATCTATTTCCTTTGCTTCTGGCGGGGATCCTGTAAGT

a score=5825
s chr3            89424739 129 + 160039680 CACTG-GTGGTCTCCACTGTG------TCCCAGCCTGCCATATCCTGGAGTGTCCTGAAGGGCTTGCTCAGGATGTCATCAGCACCATCGGGCAGGCCTTTGAGTTGCGCTTCAAACAGTATCTCAGGAATCCACC
s HiC_scaffold_1 191537033 136 - 233722169 CACTGTGTGGCATTCTTTGTGCATCTCTCACAGCGTGCCACATACTGGAGTGTCACAGTGGGACAGCCCAGGATGTCATCGGTACCATCGGGCAGGCGTTCGAACTTCGATTCAGACAGTACTTGACAAATCCGTC

a score=8501
s chr3            89427264 185 + 160039680 AGCAGCTGCAAGGGGAGCCCTGGTTCCACGGGAAGCTGAGCCGGAGGGAGGCCGAGGCGCTGCTGCAGCTCAATGGTGACTTCTTGGTGCGAGAGAGCACGACCACGCCTGGCCAGTATGTGCTCACTGGCCTGCAGAGTGGGCAGCCCAAGCACTTGCTGCTGGTGGACCCTGAAGGTGTGGTA
s HiC_scaffold_1 191551438 185 - 233722169 AGCAGCTGTGGAGCGAAGACTGCTACCACGGCCGGCTGAGCAGGAAGGCTGCCGAGAGCCTCCTGGTGAAAGATGGGGACTTTTTGGTTCGAGAGAGCGCAACATCCCCTGGCCAGTATGTGCTGAGCGGGTTGCAGGGTGGCCAGGCAAAGCACCTCCTCCTGGTGGACCCCGAAGGCAAGGTA

a score=5065
s chr3            89428310 120 + 160039680 TCCCAGGTTCGGACAAAGGATCACCGCTTTGAGAGTGTCAGTCACCTGATCAGCTACCACATGGACAATCACTTGCCCATCATCTCTGCGGGCAGCGAACTGTGCCTACAGCAACCCGTG
s HiC_scaffold_1 191562012 120 - 233722169 TTCAAGGTGAGGACCAAGGACCACGTATTTGATAATGTGGGGCACCTTATCAGATACCATATGGATAACAGTTTGCCAATCATGTCTTCCGGAAGCGAAGTAACCCTTAAGCAAccagtg

a score=10939
s chr3            89433252 234 + 160039680 CCAGCCTCCCCCAGGCCTGGTGTACCCCTGCGGTGCCTGCCGTAGTGAGGTAAATGATGACCAGGATGCCATTCTGTGTGAGGCCTCCTGCCAGAAGTGGTTTCACCGCGAGTGCACCGGCATGACCGAGAGTGCCTACGGCCTGCTGACCACCGAGGCCTCTGCCGTCTGGGCCTGTGATCTTTGCCTCAAGACCAAGGAGATCCAGTCTGTCTACATCCGAGAGGGCATGGG
s HiC_scaffold_1 187123706 234 - 233722169 CCACTCGTCCTCTGACCCGGTGTACCCTTGCGGGATCTGCACAAATGAAGTGAACGACGACCAGGATGCCATCTTATGTGAGGCCTCTTGTCAGAAGTGGTTCCATCGGATCTGCACGGGAATGACGGAGACAGCTTACGGCCTGCTGACTGCAGAGGCGTCTGCAGTGTGGGGCTGTGACACCTGCATGGCTGACAAGGACGTCCAGCTGATGCGCACCAGAGAGACCCTGGG

a score=4515
s chr3            89700559 113 + 160039680 caaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATGAT
s HiC_scaffold_1 167441808 113 - 233722169 CAAATACAGTCATGCATGGCTTAATGACAGGGATATATACAGAGAAATGTGCCACAAGGTAGTTTCATCACTGTATGAACATCACAGCATGCATTTATATGAACCTAGAAGGT

a score=4047
s chr3            89700560 96 + 160039680 aaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTA
s HiC_scaffold_1 102194350 96 - 233722169 AAATACAGCTGTGTATTACTTAAAGACAGGGATACATTCTAAGAAATGCATCATTAGGCAAGTTCATCACTGTTCAGATATCATACACTATACTTA

a score=4293
s chr3           89700560 121 + 160039680 aaACACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATGATGCGTCGCTG
s HiC_scaffold_1 53412096 117 - 233722169 AAATACAGTTACGCA-CTCTTAATGACAAGGACACATTCTGAGAACTGCATTGTTAGGTGATTTTGTCATTGTGCTACTCTCATGGAGTATACTTACACACACCTAGGTCA---GTCACTG

a score=3915
s chr3           89700564 96 + 160039680 ACAGATGTGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATA
s HiC_scaffold_1 23647571 96 - 233722169 ACAGTCATGTGTCACCTAAAGACAGGGAGGTGTTCTGGGAAATATGTTGTTGGGCAATTTTGTCATTGTTCAAACATCACAGAGTATACTTCAATA

a score=3681
s chr3           89700571 99 + 160039680 TGCATCCCCTAACAGCAGGGACGCACTCTGAGAAGTGCACCATTAGGCACTTTTGTCGGTGTCTGAAACCCACAGGATGTACTTAAATAAACCCAGATG
s HiC_scaffold_1 93618319 99 - 233722169 TGTGTCCGTTAATGACAGGGTTGTGTTCTGAGCAGTGCATTTTTAGACAGTTTTGTCACTGTGCTAATATGACAGAGTATGCTTACACAAACTAAGGTG

a score=4684
s chr3            89813643 120 + 160039680 AAAAAGACCCGTTAA--ATGAATGGCAATTCATTGGTGTAACGAACTAAAACCAGAAC----TCTTTCAAGGAGCGAGTCCCACATGGAAGATGATAGTTCAGATTCTCT-CATTTCCAAAggaggc
s HiC_scaffold_1 229520021 123 - 233722169 aaaaaaaaaagttaacaaggACTGACAACTCATTTGTGTAACTCACTGAAACCAAAATAGTATCTTTCAAGAAG----TCCCACATGGAAGATGCTATTCCAGGATCTTTAAACTTACAAAGGATGC

a score=31196
s chr3           89820794 910 + 160039680 gagcagCAC--CCTGGAGTTCCGTGGACCCGTGTCTTACTTCAACAGTGTTTGGACGGAACAGATCCAGGGACTTCCTCTTTGTT---------------AGCTTCCAGCCACCTTACAGTCTCTCCAACCGCAGCCCTCTGGGACCATCTCCTCAGAGCCTTCGGCTCC---AAGAGCCAGCCAGCACC---TCTTCCTGGTTAGCTCCATACTCCACATCAGCCATTACCTCTCAGATTCATCAGAATTATTCCATCGAAGTGGAAGCTTCTGTGAACCGCCAGGTATACTTG---------------------TACCTCTCTCTGGGCTACTAT-----------------AGATT----GGGTGTAGGCCACTTTTTCTACGAATTGACCAAGGAGAAGCACT--GTTATCAAGTGTCTCCTCAAGATACAGAACGAACTcgggggcgggggcgggggcggaggGAGGAGCGCACTCTTCCAGGATGCGCAGAAGCCATCTCTAGATGAATGGGGTAAACCCCAGGAAGCCATGGGTACTGCCTTGGCCCTGGAGAAGAACCTGTACCAGGCTGCCTTGGGTCTTCAATCCCTGGGTTCTGCCCGCACAAACCCTCATCTCTGTGACTTCTTGGAAGAACCACTTCCTAGATGAAGAGATGAAGCTCATCAAAAAGATGGGCAACCACGTGACCAATCTCTGTTAGGCTGGTTGGGTCACAGCCAACACAGACTGGCATGCCCCAGCCACCTCCGGGTGAATATCACTCTGAGCAGCTCATTCTCAAGCTTGACTCGGAGACCCCCTCACCTTCC--------AAGGGCTCCCTCCTCTGCTCGGCACCAGCCCACCTCAAGACCTCCACCTGAATGAACCTCTGAAGCCACTAGACAGCTTCGTAACGACCCTGCAGCCCCCT-ACAAGTCATGGACC-AAGTAAAATTAAAACTTTTTGAAACAGGAAAAAAAAAAAGGAA
s HiC_scaffold_1 26161035 916 - 233722169 gagcAGCGCGTCCGGAGGTCCCGCGGATCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGACCCGgggactccttttttttttttttttttttttaaatctcccatCCAC---------TCTCCAGGTACAAATTT-TGGGACCATCTTCTCGA--CCATCTGCTCCTTCCAGGGCCAGCCTACACCGTTCTTTTGTGGGTAGCTCCTTCCCGCTGATCAGCAATGACCTCTCAGATTCGTCAGAATTATTCCACCGAGGTGGAGGCTGCCGTCAACCGCTTGGTGAACCTGCACTTGCAGGCCTCCTACACCTACCTCTCTCTGGGCTACTATTTCGACCGCGACGATGTGGCTTTGGCGGGCGTGGGCCATTTCTTCCGTGAGCTGGCCAAGGAGAAACGTGAGGGTGCCGAGCGCCTCCTGAAAATGCAAAACCAGCGCGGCGGC---------------------CGCGCGCTCTTCCAGGACGTGCAGAAGCCTTCTGAGGATGAGTGGGGTAAGACCCTTGATGCTATGGAAGCGGCTCTGACCCTGGAGAAGAGCCTGAACCAAGCTCTTCTGGATCTCCATGCCTTGGGCTCTGCCAAGACAGACCCTCATGTCTGTGATTTTCTGG-AGAACCACTTCCTAGATGAGGAAGTGAAGCTCATCAAGAAGATAGGTGACCACCTCACTAACCTCC-----GCAGGTTAG---ACggtc--cccaggctgg---------------gctgggcgaGTACCTCTTTGAAAGGCTCACACTTAAGCACGACTAGGAGGCCCCAGAGCCTGGCAGTATCTGAGGGGCTC-----------CAGCATCA-CTGGCATCAGGGCTTTGGCTGGACCCTCTCCCTCCAGCCACTAGGCAGTTTTTTCACCTCTTTGGAGTCCCCTCCCAAATCTtggaccaaaagaaaaataaagcctttcacagcaaaaaaaaaaaaaaaaaa

a score=5997
s chr3            89849465 254 + 160039680 GCCAAGAGACGCAGCTCCAAGGACCTGCTGGGGAAGCCGCCACAACTCTATGACACCCCGTACGAGCCTTCGGAGGGTGGCCAACGTGTGGCAGAGGTGAAGACGCGGCCAGCAGACAGCAGGCT-----ACCAGAGGAGGATGATCGGCCCGCTGCTGAGTATGAACAGCCCTGGGAGTGGAAGAGGGAGCAGATCGCGAGAGCCCTGTCAGGTGAGGGTG-----CAGTGCCTGCCTCACCAAA---CACAGCAGCGCTCTGGGC
s HiC_scaffold_1 198433237 265 - 233722169 GCAGAGATCCGGGGCTCCAAGGAGCCAGCCGCCCAGCCCTTGCCTCTGTATGACACCCCTTATGAGCCGGGTGAGGAAGCCCTTAGCCC--CGAGGGTGAGGCTGCGCCCTGGCCCCGGGAGTCTCGCCTGCCAGAGGATGACGAGAGGCCCCCGGAGGAGTATGATCAGCCCTGGGAGTGGAAGAAGGAGAGGATTTCCAAAGCCTTTGCGGGTGAGCCTGGGCGACGATGTTTAACACGTCAGAGGGTACAGCAGCCATGtgtgc

a score=6120
s chr3            89852333 160 + 160039680 CCCATGGCCTTGTTTTTCTCTCCCCCTCTGCAGTTGGTATCACGGCTCCATCAGCCGAGCTGAGGCCGAGAGCCGACTACAGCCCTGCAAAGAAGCCGCTTACCTGGTCCGGAACAGTGAGTCAGGGAACAGCAAGTATTCCATTGCACTGAAGTAAGTG
s HiC_scaffold_1 198435882 160 - 233722169 CTCACAGACGTGTCCTCTCCCCTATTCCCACAGCTGGTACCACGGGGCCATCAGCCGAACCGATGCCGAGAACCTGCTTCGGCTGTGCAAGGAGGCCAGCTACCTGGTGCGCAACAGCGAGACCAGCAAGAATGACTTCTCCCTGTCCCTCAAGTGAGTG

a score=5600
s chr3            89854516 183 + 160039680 TTTTCTATCTC-CAGGACGAGTCAAGGGTGTGTCCACATCATAGTGGCTCAGACAAAAGACAACAAATACACACTGAACCAGACGAGCGCTGTGTTTGACAGCATCCCTGAAGTGGTACACTATTACTCCAATGCAAAGCTGCCTTTCAAAGGAGCAGAGCACATGACCCTTCTCCATCCAGTG
s HiC_scaffold_1 198438267 184 - 233722169 TTTTGTTCCTCGCAGGAGCAGCCAAGGCTTCATGCACATGAAGCTGTCCCGGACCAAGGAACACAAGTATGTGCTGGGCCAGAACAGCCCCCCCTTCAGCAGCGTGCCGGAAATCGTGCACCACTATGCCAGCCGCAAGCTACCCATCAAGGGGGCTGAGCACATGTCGCTGCTGTACCCCGTG

a score=4364
s chr3           89893160 77 + 160039680 ctgcccaggtgtgtgcCTGCCCAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTG
s HiC_scaffold_1 38774607 77 - 233722169 CTGCGCAGGTGTGGCTCTGCCCAGGTGTGGCTCTGCCCAGGTGTGGCTCTGCCCAGGTGTGGCTCTGCTCAGGTGTG

a score=4150
s chr3           89893176 77 + 160039680 CTGCCCAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTGTGCCTGCACAGGTGTG
s HiC_scaffold_1 38774607 77 - 233722169 CTGCGCAGGTGTGGCTCTGCCCAGGTGTGGCTCTGCCCAGGTGTGGCTCTGCCCAGGTGTGGCTCTGCTCAGGTGTG

a score=7295
s chr3           89965473 542 + 160039680 CCTACCTGAAGACGCCAGGGCCCCAGCCAGCAA-AGTAGTGAAGATCCTTGGGCCCAGGTCCCGGGCAGGGTTGAGTGGAAAGCCACAGTTTGCACCCATGGATAGTCCAATGGTGAGGATCAGCAGTCCCACCACCACCGGCTCCAGACCTGCAGGCGCTCCTTTATTCCGTCTGTCTAGGGTCGCTAACAGCCCCACAATCAGCATCCAGGTACCCA-GAACCCTGAGGTTGACAG---AGGTCGAAGGAAAGCCATCAAGTGACACATAGGTGCTTCATTTGCCTTCTGTCACTCAAACACACTGTGCCACCCCC------------TCTATGCCATCTGTGCAGCA------GAAGCTACGGGAC---CAAGG------------TAGAATGAAC-----CCATATTCCA-----------CCCAAAATCTGA----------------------------ACAACGAGCTGGGATCCCAACAAACAAGGCAAAGTGCGGGACTTTCCCATATCTTCTGCTCATACT-----------TACCTGATCCAAGAAGCCATTGTTCAGGGACAGATAGGGGGAAGGGTAAGTGGCAAAAATGGAGGCTGCCTCTTTGGGACCGGTCACTGTCAG
s HiC_scaffold_1 54284395 613 - 233722169 CTCACGTGAAGACTTCTGAGCCCCAGCCAGCGATGGCAGTGAAAAGGCGGGGGCCGAAGTCCCGAGCAGGGTTGACAGCATAGCCAGAGTTGAAGCCCATGGAGGTGCCGATGACAAGGACCACCAGGCCCACGGTGAAAGCCTCCAGGCCACGGGGAACAGGATTGTTGTAAGGATCGACGATGGCCAGCACACACACGATGAGGGAGGCTGTGCCTATGAACTGAGGGGTTGGGAGAACAGGTTGAGGGGCAGCTCTC---TCACAC------TCTCACCCTGCCGTCTGTC-----------CTCTGCAGCTCCTGGAATGTGGCTGCCTAAAGCAGTGGTGCAGAAATGTTTGCAGCAGAGGAACTGACAAGGAGCTGCATGTTTTATGAGGACCTGCCACCATGCTCCACTGCAGGGGTGCCCACAAATTGAGAAATCTTGTGGTTATCAAGGAGTCCTGGCTACTAGCCAGCCCACAAGCAACCAAAGGAACGT--GGTCCCCCTCCCTGCATTCCCCTCACACGTCCCCAGTCCATACCTGATCGAAGAAGCCATTGATCATGTCCAAGTGTCCTGAGGGGTAGGTGGCAAAGATGCCAGCTGTGCCGTTGGGGCCTGAGACTACCAG

a score=4160
s chr3           89966119 207 + 160039680 TCTTACCATAGTAGAGAATGTAAGTGGCCCCTGAGGCACAGAAAGCAGACAGCAGTTGCACAACGCAGTAAACGGGGAGCTTGGCCCAGGGGAGGCGTCCCACCAGGCACATGGCCAGAGAAAAGGCTGGGTTTAGGTGGGCTCCTTCACAAGATCAAAGGGGAAAGACAGTGTTAGGTACCACTGCCAAACACTGTCACAACACCA
s HiC_scaffold_1 54285381 200 - 233722169 TCTTACCATAGTAAAGCCCAAAGATGATCCCAGCACCCAAGAAGGCTCCCAGGGTCTGAGCCAGGGTATAGACCAGCAGCTTGATCCAGGGTTCTCGGGCCAAGAAGCACATGGCAAAGGTTACAGCAGGGTTCAGGTGGGCTCCTGGGTAG----ACAGGAGATAAAATCTATTAG---CTACAGCCAGCTACAGTGAAGATGCCA

a score=4082
s chr3            89975461 139 + 160039680 ATTTTGTGAAGCAGATGAGACGTTGAATTTATCAGGAGTGTGTACACAGCATTCAGCCTTGATAATACCACAAGTACCTCCTTGAGCTAATATAGGAGATCCTAATGCCATAC-AGTTTGTTTGACTGTGTTTCTCATCA
s HiC_scaffold_1 106609864 140 - 233722169 ATCTTGAGTAGTCTTTGAGATATCAAAAGTATCAGGAATTTATACACAACATTTAGCTTTTATAATTGTACAAGCATCCCCTTGTGCTGCTGTCAAGATACCAAAGGCCATCTGATTTTGCAAGACAACTTgtctcatta

a score=4279
s chr3            89975491 88 + 160039680 ATCAGGAGTGTGTACACAGCATTCAGCCTTGATAATACCACAAGTACCTCCTTGAGCTAATATAGGAGATCCTAATGCCATACAGTTT
s HiC_scaffold_1 137105982 88 - 233722169 ATCAGGAATATATACACAACATTCAGTTTTTACAATTGCACAAGTACCACCCTGTGCTGCTGTTAGTATTTCTAATGCCATCCAACTT

a score=7096
s chr3           90002285 192 + 160039680 TCCTGCTGCAGGTGATGGTGAAGGATCTGAGAGTGTGGCTGCTGATGTGGGGTCAGAATATGCATAAAGGGGGCAGGTGGGTAGGCAGCAGCTGTGGCTGGATTGATGGGCCCTCCACTTCCTAGGGCTGAAGGCAAGTTGAAGGAGGCAGCAGGAGTACCGGAATGAAACCCTTGTTTCTCAAAGGACTGC
s HiC_scaffold_1 54413133 189 - 233722169 TCCTGTGGGAGGTGGTGGTGCAGCAGCTGTGAATGGGGCTGCTGGTGGGCTGGCAGGATGTGCAGGAAAGGTGCAGGTGCGTAGCCAGGGGCTGCTCCAGGGGCTAAGGGGCCAGCAGAGCCCAGGGCTGAGGGCAGGCTGAA--AGGTGGT-GGAGTCCCTGCAGGAAATCCCTGCTTGTCAAAAGCCTGC

a score=10751
s chr3           90009085 254 + 160039680 GACCACAACCACT-CAGTTACTCACAGGGAACACAGCAGGCCCATACTGGAAGGTGCTGGGGAGGCCCGGGACCCCTGTGTAGTATGGCAGGCTGGTGTAACTATAGCCAGGAGGCAGCGCCGGGTTCAGGAATGTCTGCTGCGTGGTGTGGTGAGTCTGCGTCTGGTTCTGTTGGGGTTGGGCCAAGGTTGTGGCTGGGGCTGGGGAGGAGGCATCCCCGCGGCCGAATTTGGTGAGGTCGCCTATGAAAAGAA
s HiC_scaffold_1 54414154 243 - 233722169 GACTGCAGCCCCCACAGGTACTCACA---AACATGGTGGGCCCATACTGGAAGGCACTGGGTA---------CACCCGTGTAATAGGGAAGGCCTGTGTAGCTGTAGCCAGGTGGCAGCGCGGGATTCAAAAAGGGCTGCTGAGCTGTGTGGTGGGTCTGGGATTGGCTCTGCGGGGGCTGAGCTAGGGTGGTGGGAGGAGCAGGAGACGCAGAATCACCTCTGCCAAACTTTGTGACATCACCTAGCAGAAAAA

a score=6126
s chr3           90020959 121 + 160039680 GACTCATAATCAGAAAGGACAGGCTCTGACCCAAACTGCAATGCCCCAAACTGTAGATTTAGCCCTGAGATATCTGCTGAGCCAGGCATCTCCACAGCCAGAGCAGGAATCTATGAAAAAG
s HiC_scaffold_1 54428818 119 - 233722169 GATCCAAACTCAGAAAGAAAGGATTCTGATCCAAACTCGAGGGCTCCAAACTGAACATTTAATCCTATGACATCTGCTGAACCAGGCATTTCCACTGCAGAAGCTGGAATC--TGAAAAAG

a score=6273
s chr3           90043696 116 + 160039680 TACCGTGTCTGGATTTCCTTCCAGGAGAACATTGATGGCTCTGTTGACATCTCCATTGCAGTCATGCAAAGCAATCACACATTCATCCTGGTTTTTGCCTGTGATATCAATCAACT
s HiC_scaffold_1 54472677 116 - 233722169 TACTGTGTCTGAACTCCCTTCCAGTAATATATTAATAGCTTTGTTGATGTCTCCATTACAGTCATGTAGGGCCACGATGCATTCATCCTGATTTTTCCCCGTCACTTCCATAAGCT

a score=4022
s chr3           90044844 94 + 160039680 GACACTCACTTGTTTCACCTTCTCCTCAAAGTCAGCATCATTATGGTCCGAAATCATCTGTGCAAGTCGAATTTGCTCTGCAGTGGCCTAGGGA
s HiC_scaffold_1 54475583 94 - 233722169 GAAACATACCTGTTTTACTTTAGCTTCAAAATCGGAATCATTCTTATCAAAGATCACTTGAGCAAGACGCATCTGTTCAGCTGTGGCCTGGAAA

a score=5558
s chr3            90058479 135 + 160039680 CTCAGAGATCCCGTTTCATGCTGAAGGCCGGCACCCCTGTTCTTTAATGGGTAAGAATTTCCGCTCCTACTTGCTAGATCTGCGAAATACTAGCACTCCTTTCAAGGGTGTTGGCAAGGCCCTCATTGATACTCT
s HiC_scaffold_1 164796233 134 - 233722169 CTCTGAGATCCCATTTCATGATACAGGGTAGCAGCTCTATTTCTTAATGAATGAGCATTTCAGCTCCTAATGCTTAAATCTCCAAAACACTAGCA-TTCTTTCAAGATAGCCTGCAAGACAGGCTTTTATATTCT

a score=4039
s chr3           90222208 97 + 160039680 TTACCTGTCTTCACACCCTT-CACCCCAGGAATTGATTTCAAGATCCGAACCGTGGACATAGAGGGGAAGAGGATCAAACTGCAAGTGTGGTGAGTGA
s HiC_scaffold_1  8036548 98 - 233722169 ttacctctttttttccccttgtattACAGGAATAGACTTTAAGATCAAAACAGTTGAATTACAAGGAAAGAAGATCAAGCTACAGATTTGGTAAGTGA

a score=3970
s chr3           90223514 74 + 160039680 CTTTTGCTTCAGGGACACGGCTGGCCAAGAACGATTCAAGACAATAACTACCGCCTATTACCGTGGAGCCATGG
s HiC_scaffold_1  8047010 74 - 233722169 CTATTATTTCAGGGATACGGCAGGCCAAGAGCGATTTCACACCATCACAACCTCCTACTACAGAGGAGCAATGG

a score=3948
s chr3           90223788 86 + 160039680 GGGCATTATCCTCGTATATGACATCACAGATGAGAAATCCTTCGAGAATATTCAGAACTGGATGAAAAGCATCAAAGAGGTAAGAT
s HiC_scaffold_1  8047082 86 - 233722169 GGGTATCATGCTAGTATATGACATCACCAATGGTAAAAGCTTCGAAAACATCAGCAAATGGCTTAGAAACATAGATGAGGTAAGAT

a score=7922
s chr3            90253400 208 + 160039680 GAAAGTGGACATGGTGGTCCATACCTAGAAAAAAACCAATAACCTGCCAAAACTTT--ATATCTGAGGAGTCCGGGGTGGAGGGAGACAGACTCCCTCCCCCAGGATTATTTTTGGGGAGGGAGGGCTGTGCATAGGTCTGTACTCTGTAGAATCTATTTTACTAACTGACCTGTTTTGGGATATGTTACCCAAATAAA-AGATGTTTCTA
s HiC_scaffold_1 158272581 191 - 233722169 GGACATGAACATGGAGTCCCACACCTAGA---------------TGGTAAGATTTTCTACACCTCATGAGCACAGGG-GAAGGGAAATA----TCCACTCCCAGGGTTATTTTTGGGAAAGGTGGGTTGTGTATAGGCATATTCTCTAAATAATCTGTTTTATTTACTGACCTGTTTGGGGACATATTAGCCAAACAAAGAGATgtttcta

a score=4986
s chr3            90386464 130 + 160039680 TTCATGTCTAAGCA--CCTGGCACCGTGACTCCATAGATGTTCACCTCCTGAAGGAAGTCCAGGGTCTCCAAGACCTCAGCCACTTCAGTTGTGGCCACATTCTCTCCCTTCCACCTGTTGGCCGAGCAGGG
s HiC_scaffold_1 190614742 132 - 233722169 TTCATGTCTGCACATACCGGGCACGGGCACGCCGTACACATTCACCTCCTGGATGAACTCAACCAGGCCCATGATGTCGGCAACTTCGGTGGTGGCTACGTTCTCCCCTTTCCACCTGGAAGGGAAGCAGAG

a score=5053
s chr3            90386723 225 + 160039680 GATTGGAAAGTGACAGAGAGAT--ACCTGAAGGTGTCTCCAGTACGATCGTGGAAGTGAAGAAAGCCTTGCTCATCACAGACCAAGAGGTCCCCAGTATTGAAGAAAACGTCCCCAGACCAGAAGACATCCTTCAGCAGCTTGTCCTTGGCCAGCTCCGGAGCCCCAGCATAGCCCAGGAAGGGGGACTGCTGGCTCACTGGGGCCACCAGTAGGCCTGGCTCACCT
s HiC_scaffold_1 190616571 227 - 233722169 GGTTCAAGACTCATAGAGAAACCAACCGGAAGGTATCTCCCACTCTGTCATGGAAGTAGATAAAATTTTCATGGTCGATCATTAAGAGGTCTCCGCTGTTGAAATAGACGTCGCCTTTCTTGAACACGTCTCTCAGCTTCTTCTTCTCTGTCTGGCTCTTTCCTCCAGCATAGCCATTAAATGGTGTCAGTTGCGTGATTTTACCAACCAGGAGTCCAACTTCACCT

a score=6252
s chr3            90387619 162 + 160039680 TCTGTAGCCTAC-TCACCGGGGGCTGGTTGACGAGGTATCGGCACAACTCCCCAATGTACTGGAACACTGTCACCCTGTGTTTCTGGCAATCGTCCCAGAACTGGCTAGCTGAGAACTTGGGTTTCAGCACCACGGTGGCCCCTGCCCGGAAACGGGAGAGAA
s HiC_scaffold_1 190625629 161 - 233722169 TCTGCAAGCTGCATTACCGGGGGCGTGTTGCACAGATACCGGAGCAGTTCGCCGATGTACTGAATGACCGTCACCTCGTATTTTCTGCAGTCGTCCCAAAACTGGCTGGCTGAAAATTTCTTCCGCAAGACCATTGTAGCACCTA--CAGAAAAGGCACAGAA

a score=4557
s chr3            90404513 81 + 160039680 CTATGTTCATAATACTATCCTTTTCTGGGCTGAAGAACAGCCAGTCATAAAACAAAGCCAGCTTGGCATTGGAGGCAGCAA
s HiC_scaffold_1 116877220 81 - 233722169 CTATGTTCTTCATGCTATCCTGATCTGGACTAACGAACAGCCAGTTGTAAGACACAATTAGTTTGTCGTTAGAGGTAGCAA

a score=20257
s chr3           90468775 770 + 160039680 TGGAGGTAAAGTTCTAGG----GATAAGGCCTGGGGCTGCAGTGGAAAGAACAG-------ATGATCAGTATTCCCTTCTTCCTTCCTCCCTTCCCCTTCAACAGCATTCACACCGCCCTTCCAACATGTC----TTCAGGGTAGCAGTGCCCTCATGGACCTCAGAAG--TCCCTCCTTCCTGTATCCCCTCATCCACATGCCAGTGAACAAAGGTACGCTTTGCACACATCAGGTCAAACTTGTGGTCTGGGTGATCCCAGGCCTCAGCAATGACACCAGTGCTGTTCAGCATGCACACAGCTCACTGTGGCTGGTCCGGGTTTCTTCCTCTGGGAGAGGTG----------------TGTGCCAGCCTTGAGGCCATTGGAGTATGAGACTACAAACTACATGCTGTACATGGTCTCAATGGTGGCAGACCGAACATTGACATCTTTAGGAACCACATCACCA-GACCATGTCAAGCATCAAACCTCCGTGTTTACTATGGTG-AGGTGACTTTTTAATCATATGATTGGCTAGCTCAATGTAAGTACTTGTGATCTTTGCAGAAGAACCTGGGTCCTGATAGGCTTTCTCAGCAGAGTAGACGGGCATATGTAGGAAGGTGGAAATGGAAGT-----------------------------------------------------CTATCAAATGGAAGGAGGACAGTGATAGAAGATAGAAACTGCCTACGGTGACAATTGAGGTTAATGTAGGTTGGGTGTTCAATATTAGGGTTTCTATGACAGATGTCATAGACGGTCTCATTGTCTACCATGAAAATACAGTCAGAGGGCCGCAAGATAGTGACGGTGG
s HiC_scaffold_1 15387433 820 - 233722169 TGAAGCCAAGGCTCTGAGAGCTGACATGACTCAGGGATG-AATGGAACGCATAACTAGCGCGTAACTAGTGTTCCCTCCTTCTTCACT---GTCTCCTTCAACAGAAGCCACACCAAACTCTTCATGAGTCCTTCTTGAGGACATCCATGTCTTCCAGGGCCTCAGAAACATCCCTTCTCCC---ATCCACTCACCCATGTATTAGTGAACAA-------CTTGTTACATATCAGATCAGACTCTTGGTCCAGGCAAGCCCAGGCTTCAGCAATGGCTGTGGTGTTACTCACCATGCAAACAGCCC--TGTACCTTGGCCAGGTCACCACC---AGGCAAAATGATAGGAGGCCAGTAATTAAGGTAACTTTAAAGCCAGTGGGACATCAGTCCACAGACTAGATGCTATGCTTAGTCTCAATGGTGGCAGTGGCAGCATTAACAAGTTTGGGGACCACGTCACCGTGATAACGACAGGGAGAAA-------------CCATGGCGGAGGTCACATTTCA-CCATATGGTTGACTGGCTCAAAGCAGGCATTGGTGATCTCTGCTACAGAAAGCTGTTCATGGTAGGTTTTCTCAGCAGAGAAGA-AGGCATATTTGGCCAAATGGAAGTGGATGTGGGGATAGGGAACCAGTTTGGTCTGGAATTTCGTCAGATCAACATTCCTGGCTCCATCAAATCTGAGGGAAGTGGTGATGGGAGACACAATCTGGCTAATAAGGGGGTTCAGGCTAGTGTATGTGAGGCACGCAATATCTAAGTTTCTACAACAGATGTCATAGATTGCCTCAAAGTCCTCCATAAAGGCA----CAGAGTGCTCTGGGCTGGTGTGGGTGG

a score=9282
s chr3            90468860 208 + 160039680 CTTCAACAGCATTCACACCGCCCTTCCAACATGTCTTCAGGGTAGCAGTGCCCTCATGGACCTCAGAAGTCCCTCCTTCCTGTATCCCCTCATCCACATGCCAGTGAACAAAGGTACGCTTTGCACACATCAGGTCAAACTTGTGGTCTGGGTGATCCCAGGCCTCAGCAATGACACCAGTGCTGTTCAGCATGCACACAGCTCACTG
s HiC_scaffold_1 232931209 207 - 233722169 CTCCAAAACTATCCACACCACC-TCATAATCCTTCTCCAAGGCAGCCATATCTTCCCAGGCCTCTGAGAACTCACCCTCCTCCATGCCCTCTCCCACATACCAGTGCACTAAAGCCCTCTTGGCATACATCAGGTCGAACTTGTGGTCCAGGCGAGCCCAGGCCTCTGCGATGATGGTCGTGTTGCTCAGCACGCACATGGCTTGCTG

a score=8986
s chr3           90651694 215 + 160039680 GCCATTGTGTGAATCCTTACAGACCCAGCTCCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCTGGATCTACTGAGGAATAGGGCGATTTTGTTTTTGTTTCTTGGCCAGGAATCGTTTGATTCAGAAAGTCTTGTGAGAAGACATGGCGAGAAACCGAATCAAGAATAGCGCACACGATGGCGGAGGA
s HiC_scaffold_1 12249111 209 - 233722169 GCCACCCCACGTGCCTTTGTGGATCCAGCTTGGTTCTTCTCCAGTGTCTTTCCTTGGCATTGAACCTGATTGTAATCCCGATTTCCACCCAGATCTCTTAGGGAATGGGGGGATTTTGGTTTTTTATCCTGACCAGAAATC-CTTGATCCTGAAAGTCTCATGAGAAGATGTGGTGAGGAATGGAGCCA-----ACCACACACCATCATGGTGGA

a score=10066
s chr3            90651700 180 + 160039680 GTGTGAATCCTTACAGACCCAGCTCCGTTCTCCTCCAGTGTCTTC-TCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCTGGATCTACTGAGGAATAGGGCGATTTTGTTTTTGTTTCTTGGCCAGGAATCGTTTGATTCAGAAAGTCTTGTGAGAAGACATGGCGAGAAACCGAA
s HiC_scaffold_1 171540805 180 - 233722169 GTGCAATTCCTTACAATTCCGCCTCGGTCCTCCTCCAGTGTCTTCCTTTTGGAGTTGTCCCTGATTTTGTTACCAGTCTTCATTCAAATTCATTCAAGAGTAGA-TGATTCTGATTTTGCTTCTTGGCCAGGAATCTTTTGATTCTGAAAGTCTTGTGAGAAGGCTTGGTTAGACTCAGAA

a score=11188
s chr3            90651705 215 + 160039680 AATCCTTACAGA-CCCAGCTCCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCTGGATCTACTGAGGAATAGGGCGATTTTGTTTTTGTTTCTTGGCCAGGAATCGTTTGATTCAGAAAGTCTTGTGAGAAGACATGGCGAGAAACCGAATCAAGAATAGCGCACACGATGGCGGAGGAATGGAGAAGAG
s HiC_scaffold_1 114989369 215 - 233722169 AATTCTTACATTTCCCAACTTGGTCCTCCTCCAGTGTCTCCTCTTGGAGTTGTACCTGATTTTACTACCAGTCTTCATCCAAATCTACTGAGGAATGAGACGATTCTGCCTTTGCGTCCTGGCCAGGAATCACTTGATTCTGAAAGTCTTGAAAGAAGACATGGTTAGGTTTGGAGGCAAGCACA-TGCACAAAATTGTAGCTAGAAGCAAAAgag

a score=9018
s chr3            90651719 201 + 160039680 CAGCTCCGTTCTCCTCCAGTGTCTTCTCTTAGAGTTGTACCTGATTTTGTTACCAGTTTTCATCTGGATCTACTGAGGAATAGGGCG-ATTTTGTTTTTGTTTCTTGGCCAGGAATCGTTTGATTCAGAAAGTCTTGTGAGAAGACATGGCGAGAAACCGAATCAAGAATAGCGCA-CACGATGGCGGAGGAATGGAGAAGAG
s HiC_scaffold_1 233246285 199 - 233722169 CAGCTTGGTCTTCCTCTAGCATTTCCTCTTGGAGTTGTACTTGATTTTGTTACCAGTTTTCAGGTGAATCCATTGAGGAAGGAgatgttttttgcttttgcttcttggATGTGAACTGTTTGATGCTGAAAGTCCTATGAGAAGACATCATGAGGATCAGA---GGAAACTGTGTACCCCGATGGCAGAAAAA-GCAGAAGAG

a score=78345
s chr3            90652594 6733 + 160039680 [encoded data, 7275 characters]
s HiC_scaffold_1 137483415 6326 - 233722169 [encoded data, 7275 characters]

a score=38816
s chr3            90667810 2715 + 160039680 ctaccaca-----GCTCTGATGGCCTGGGTGCTG---AAGTAGA--ACCAGGATTGGTATCT---------GAAGGAGAGAAGGGATGAGTTTTCCCCA--TCACCTCTAGTTCTTGTCAGATCATGCTAGGGACTCTGc-------------------aattctgacacacttggactgggaaattggttgactccctccacctttctgggcttcagcttcctcgtctgtacattg-gctggttcagctctctgccttcctgagaagcatattatgaagcttttgtaagataatgtggatg--aaaCCCACC--CATATGAGAAATACTCCATAGACCTCTATAAACTGGCAGCCAGTTAATTCGAGTGGTATTCTACTGGGCTTGGGGA-----TTGCACCTATGAATTCCTGGG-AATAAGCCCCTCT-TCTTTTTCCCTTGGGCATGAGACTCACATGGACTCTCCAAAATACTTGACCCCTCACCATCCTAGAGTTCACTCCTCTCTTCATCCCAGGCTCCTGGGGACAAAGGTACAGTGACCATTCTGAGAGGCTGAAAGGGTCTCTACTGTTATCATGCAGTGACTTAGTGGCAGCTGAGGGTGGACAGAATGAAGACCAGGAATTACA-------TCCAAAGACTCAGGACATC----CTTAGCTTTTAGAGCAGAAT-------GACCATT--AAGAGTCACGGGCAGGTTAGGAATTTGTCCAACTCTTGGGAATACAGCTATCCTCCAAAGACTGTACCTACCCATCTAAATAGAACCCCATAGCAGTACTCCAAACTTTACTAATATCCAGTAGCTAGAACCAGCAATGTTTCTGAGGTCTTTGGTACTTTGAGAACTTGGAGAAGTTGTCTT---------TTCTATGCACCCACACTCATACAGAAGCATACACCttcagttcagttcagttcagttcagttcagttcagttcagttcagttcagttcagttcagAGGTAGACTGGACATGAAGGCATTGGATCAGCAATGGATCCAATTAGGAGAGGGTTAAGATTGAGAGTCTGTTTAGATGCAGGGATGAGGTGCCAGGGG------------CCTAGACATGGACTTATTGCCATGCCCCATCCTGATTCTTCCTGCTGGGTACTCCTGTCTGGTAAATGTTCCAACACTCCCACTTCCTCAGAC--------TCAGAAATGCTCACTGTACTCAGTGATTGCCACATGGACTTGGTTAGGAAACAGAGGCTGTGGCAACTCTGGAAGGGAAGAGCGTTGTCTCCATAGCCCGAGGCTGTGGGCAGCTGGCCAAGCTTTCCTCTATAAAA-GCAGCTGACACTTAGCCTCACATATCCTTTGTCAGCTCCGTCTTCAAGACATCGTGTAAGTAGGGCTATGTGA--CTGTCTCACAGTGTAGGCTCTCCTTAGCGAGGGTTGGGGGATAGAGTAGCCTCCTCTGAGAGGGCGA-GAAAGCGTGGGGAAGTCTCCAGCACCGATCAAATGCTTGAGGATAA---------AGGAAGTGGAATGGCGTAGAGCCTTCTAGCAGTGTCTAGCAG---AAGA------------------------------GGGCAGGAAGTGTT-TAGTGTGGAGAATTTGCTACACTTGTGTGTGTGTGTACTAAAGTCTCTCCAATGCTCTCTCCTACCCCTT-------CCCATCAGAGATAGAGCCATTTTCTGGGTT--TAGTTATCTGAGTGGTACAGGCCAGGTCAAAGCCCATTCTTGGG-TTAAAAACCTGAATGCCCACTCAGTTGTCACCCTGCCGTGAGTAA---CTGCAGCTCCCATCCC-------TCTGCGACTTTTCCTTTCAGTTGAAAGGAAATCTTTCGTGACAATGCCGTCTGAACTGGAGAAGGCCTTGAGCAACCTCATTGATGTCTACCACAATTATTCCAATATACAAGGAAATCACCATGCCCTCTACAAGAATGACTTCAAGAAAATGGTCACTACTGAGTGTCCTCAGTTTGTGCAGGTGAGGAGGTGCT--ATGTTCTCAGGGTTTTCTAATGGTGCTGGGATGGC-----------TAGCCCTCCAAGTTGCTTTCTGCAGTTAGCCAATACTTATCCACAGATAGTCCTCGCTTACTTTTCTCTGATAC-----AGTCTGAACTCACCCCCCCCATTCTTCTTGACAGAATATAAATATCGAAAACTTGTTCAGAGAATTGGACATCAATAGTGACAATGCAATTAACTTCGAGGAGTTCCTTGCGATGGTGATAAAAGTGGGTGTGGCATCTCACAAAGACAGCCACAAGGAGTAGCAGAGCTTCT-GGCCTAGGGCTGGGTCCCTGGATATGTCTACAGAATAAAGTCATC-ATATCTCAGGTCTGTTTGAGTCTCTTGTCTTTCCTGGGGGT---------------------GAAGGA-----------------AGGGATGGAAAACT-------GGAAAGAACTGTCTTGTTTTGGTCCTTAC-TGTTCTCCATGG-----TCCAGTCCTTTCCCATGACTGCTCCTCTGGTCACCAACCCCCAGATTGTTCTCAGTCTCTTCTGGCCCCTGAACTTTGAACCAGTGGTTCTAGGATTTAGGAATTTCCCAAAGTTTGTAACTTAGACTTGGTAGT----TTTACTGGTTTATCCCAAATGGGAGATTTGGAAA-----CAGGAGGATTCTAGGCAAA---CGG----ATGCTGTGCAC-ATAACTTAGTTTCTAGTTAAATGTCTTAGATGTGACTTTTTGAAAATTAGTAGG--------ATAGGTATGAAAGGTGTGTATATGAggaaggaggagggaggaaaggaagaaggagggagggtgagagagagagGAGTGATTTTCTGTCTTGG-----GGTAGGTGGATGGTTTTTAGTC-CTACCTTAGGCACTAGAGGAGTACATCTGGT
s HiC_scaffold_1 137493671 2669 - 233722169 CTTCCACAAGAAGGCGTTAATGGCCTAGCTGCTGGCTAAGCATATGGGCAATATTTGTTGCTtgtataaaggaaggaaaaaggaaaggtgtTTTCCCCAAGTCAC-----ATTCTTGTCAGATCATGTTGTGGAGTCAGATTCTTGGGGATTCACTCCAGACTCCAACATACCAGCAGGGGAAAATGAGGTGAATAACTTTGCATGCTTGGGCCTCAGCTTCCTTATCTGTGGACAGAGGAATTTCCATGCCCTATTTTTCTAGTAGGCATATTGTGAGGCTCTTATGAGATTATATGGATGTGAAATACATTGTTATATGAGAAATACTCCACCAAGC-CAAAATTTTGAAAGCCAGTTAAACTGAATGATATCTTGTTAG---CGGGGAAGGTTTGGTCCCCTTGAAACCCTGGGGAACTTGCcactctctcttctccttttataCATGAAACATGCCTGCCTTCTCTAAAAAAGTGTGCCCCAAAT-------------GTTCCTCTTTTTAGCCCACACTGCTGGTGGT-------CTGAGACCCCATAGAGGGGT--GAAGAGTCTCT-CTGTGTCCTTGTAATGGCTGAGTGCCTTACATGGT------GCATAAGGACCTCAAGCTACCCTTTGTTTTCCAAGGCAGTGAACCCCTCCTCCTTGCTTCAAGAGCACAATTGTTTTGAGCCATTTTGGGAGATACAG------TAGGAACTGACCAAGACCTTAGTAATACAGGG----TCCAA-----GCACCCACCCA---AAAT-----------TCAGCACCCCTAGTAACACTAATGTTC--------------TTCACTTTTTTGAGGTTGTTGACTCTT-GAGAATTTGATGAAA--GCCATGGAAGAAGGTTCTGTGCAC--ACACTCAAAATGATGCAT------------------------------------TCTgttta----aattcaatttaaataaTGTGTCAAATGGCCACAAAAACAAGAGATTAGCA----------------------------TAATATTCTGGGTAGA-ACACGGAGGGGGTTCCTAGGAACCCCCCCCATCCCCGGAGAAAGAGGACTTGCCATA------------------------GTCACCTTGTTTCATCAAGGT-------CTTCCACTTCCTTTAGCCCTGCCTCTCTGAAACATTCATTCTGTGCAGTGATTGCCACATCCACTTGGTTGGGAAACAGCGAGTATAGCAACTCTACAAGA--------------------CCTGAGGCTATAGAC--CAGCCCAACCTACCCGCTATAAAAAGGAGCTTACAGTCAGGCTTGTATGTTCCTTGTCAATTCTGTTTTGGGCAGAGCTGGTAAGTGAGACCCTCCAGATCTGCCCCATACTTTGGGCTTCCttttgggggggt---ggggtggagtAGCCTCCTCTGTGAGAGGGAAGAAAAGGTCTGGGGGTCCC-----------------TGGAGGATGAGAGCAAGGCAGGGATAAGAGATGAGTGGAGTTTCCTAGCACTGTTCAGTGGGCAAAGACATTGTCACTTGCCAGTCTGGGCCTTTCTTGGGCAGAGAGAATGGCCATGGGGAGAGTTAGGGACact-gtatatgtgtgttttgCACTATCTCCTA--------CTTATGCATTTATAGTACCTGTTAAAGAT-GCGCAACTGTCTGTTGTAGTGGATATTTGGGTGGAACAGGGATGGTCAAATCCATTACTTGGGGTCTGAGTCCTGTGTGTG---GTAGGGCTCAATCTACCATAAGAAAAACCTACTGTGCCCAACTCAGGATACTCTATGTGGTTCATTTTCAGGTGAAC--AAACCCTTGTGCACCATGCTGACTGAACTGGAGAAAGCCCTCGACACTATTATTGATATCTACCACAAGTACTCCCTGATAAAAGGGAATCCCCATGCCCTCTACAAGGATGACCTGAAGAAACTGCTAACTAATGAGTGTCCTCAGTACACAAAGGTGAGGAAGGGTTGGATGTGGATGGAGTTCTCTACT--TGCTTTGATAACTCCCAGGACATTGGTCTTCTGTGTTGTCCTCGGTAGGCAGCC-ATAC--------------------CTCAACTTTCTTTGAGATCTTTAAGCTCGAGCTT-TCTCCCCTTTTACTCTTCACAGAAAAGGAATGCAGATGCCTGGTTCAGACAGTTGGATATCAATGAAGATGGTGCAGTTAACTTTCAGGAGTTCCTTGTTTTTGTGGTAAAAGTGGCCCTGAAAGCCCATGAAGAGAGCCACAAACACTAGTAGAGCTCCTGGGCCCATGCAATTGTTcctg-------caaaataataaaattatcaatACCTCAAGCCTTTCTTACTCTCTTGTGTTTTTTTgaggttgttttgtttctgcCTTTGTGGAATGAGGTTCCTGGGCTGAAATGGGCTTGGAAAACTCCTTTGGAGGAAGAATAAACCTGTGTT-ATCCTCACTTGCACCACTTGTAAGCCTTCAGTCCTTC------ACTGC----ATGGTCCCTAAACC---------TCTGAGCCTCTTCCAACGTCATGGTCTTGAGTCATTTGTTCTAAGATTTAAGGATTTAAAAAG------AGCCTAGGACTACTGATATTATTTATTGGT---TCCCAAATGTGTGATGTGGGGATCATTTGGGGTaatgttagaaaaaaatcagttccaTTCTGTAAGCTAAATTTTGGTTTCCAGCTAAAAGTTTTGGATACAGCTTTTGGGAAATTAGAAAGGTAACTACACAGGCATGAAGAGTTTGC---TGGGGGAAgagcacag-----agagagacagagacagagccaaaCAGGCA-----GATTTTCTGTATGGTATGACAGTATGTGGGTAATATTTAGACTCTTACTTAGGCAAACTAATAGTACAGTTGAT

a score=19220
s chr3            90678003 1363 + 160039680 AGTGAGTAAAGCGCTTTCTTC--AGTTTTACGGAGGGATATCTTCTTTCATCCC---------------CCTCCTAAGGCAGGAGCATGGAACGCATTGTGCAATACAGAGACAAGGATAATTCAGCT---TGGAG-ATGGACTTCTGTTTGCTAACGTTTTTCTAACTCACAATTCAAAAGTGAGCAGCTGATGTCAAAGTGACCTAGGGAAAAGATCGGAGAGCTTCTGGATTTACCAAGCCACATCCT-CACCTCATTCAATACTGAGAGAGTATGGTATATGGAAAACAGCTCCAAACGCACAGAAGAGAGCAGCCTGTTTATGCCTCTCAGCTATCTACTTGACTTGGGTGGTGGTGGTCCTGGTGGtctctctctctctctctctctctctctctctctctctctctctctctctctccctctcGGACTGGGAGG--ACATGTCTCAGCAGTTTGGATTCCTCCTAAAATTCTCTGTTGAACTTGCTGTCACCAGATT-TTTGGAGGATATGTATTCTTAGTAATGCTTACCTTT-------------------AGTTGAAATTCTAGTGAGTTATGCTTTCTCTGAGCTCACCCAGATGAACTCTAAGGAAGGTGGACCATA---TTGCCCTATGAATG--GGGCCCCAATTGTGAAGAATTAGATT---ACCAAGTTACCAACAACTGATTCC-AAGCTCATGCTTGGGCAGGGA--------------------------------AAAATGAGGTGAGAGAGACAGGTCCTTGATGCTCCATGAAGGAG-TGGTCTGGGATTATCACTACAGACAACACTGTGTCCATCATAGGAACCAACGGGCAGAGTCAGATAGGAACTGTGGTCTGGTGCAAGGTGATTTGGTTTCCTGTTTCCTCAGAGTCGGAAGAAGAACAATGCAGTGGGAAGTTGAG-GATAAGTGGCTCAGCAGGAAACCTCATGCAACACTTGAG-CCACAGAGAA-----------------------ACCTCCAGCCACTGAGATTTCCGGGGCTTGCAA-------TTT--------TCCTGTCTATCCA---GGTTCTCTACCCAAGGCT---GAGTTCAGCCAAGATCTTCCTG---ATTGTAATGGTCCAAAAGGGCATAGAGAGGGTCTGGAACTGGACCATAAGTCTCAAGCAGCTGAGC-ACAGCGGGTAGTCTAGTGGGAGATTCTGTACACATTCTTCTTGGGGGAGAAACC----------ATATTGGTCCAGAC-CTTATCCCA--CCTGCTGACC------------TCCAAATTCAAATGG---------------TTAAAGAGGGCCAGGCAATCTGGGACTTATTGGGATCCAACT---GTGAGGCAGTGTGAAAAAGAAAATAATTTCCAACCCGAGAAAAGAC-AAATGGTGACTCCTT--------ATTTCTTACTGTCATCTATTTAGAAGAAAGTAGGTCTTGTTCCTTGTTATTGTTTGATACTTGAGAAAAGTGGACTGCAAAGTGTGTCTGATTA
s HiC_scaffold_1 137498809 1387 - 233722169 AGAGACTAAATTGTTTCTTTCTCAGCTCTGCTGAAGTACATCTTCATCAATCCCTCAAAGCTAAGGTTCCCACCTAAGTCAGAAGCATGAACCATACGCTGCAT------AACAAGGATTACACAGTTCTCTGAAGCATCATATTAGTCTTGCTA--TTTTCTATAATACATAGTCCAA------------------------------------GATGGGAAGCATTCCAGGTTCATCAGCCCACATTCTACATCTCACTCAGCAATGAGGGG---TAGTAATGGGAAGACTACTCCA-------------GAACATTC--------------------CTAC---ACTggggtagtggtggtggtgatgatgatggtaagGGTGTGTGTATTTTCC--------------------------AGGGTTAGGTTAAGAGGCAACATTTCTCAGTGTCTTTGATTCCTCTTAAAATCCACTGCTGGACTTGTTGGCA---GATCATCTGGGGGAGATTTATT----ATAGTGCTTTCCTCTGCAGTAGTACAATGGTACTAGTTAAAAGTACAATGAGTT-TGCTTTCTCTGAGCCCACCCAGA---------------GTGTCCTGTGCAGTTTCTCCATAAGCGATGTGATTCTAGAATGAAGAATTGGATCCACACTGAACCATTAACAGTTTATTCCTGAACTCATGCTTAGATGGGGAGGTAGCCAGCTGGTCTGACAGTGTGGGTTAAGAGGAGGAGGTGAGTGACACAGTTCttaaaaacttcaagaggaggcTTGAAGAAGGTAATT--TACAAATACAGCTGTGCCCATTACTGGAAACACTGGGCAGATTCAG--------------------TAAGGTGGTATTGTTTCCTGTTTCCCCAGCTACAAAAGAAGAACAAGGTAGTGCAAAGTTGGGAAACAAGTAGTTTGACAGGAAACGTCATGTAACATTTGAACCCACAAAGGAGATCTTGGCCCAGCAATTGAGGCAGATCCGGCCACTGAGATTTCCAGGGTCCCTAAAGATGACCTTCACTgaaatcttgtttctccatttacTTCTTCACCCAAGGCTCTCAACTTCAGCTGAGTTCCTAGTAAACATTACAAAACCCCAAGAGGACACAGAGAGGATCTAGTGCTAGAGAATTAATCTCCATCATCTGAGCAAAAGAGCTTATTTCAACAAAACATTTTGCCTGTATGTCCCGTTGTCAGAAAGCCAGCTACTCAGATCCCAGTCCTAACTCTAATCCTACTCCTTCTTACTGGGGGAACTGAGTCTACATTAAAATAGGCTGATGAATGAATATGGAAGAGAGC-------TCCTGTTCTTATTAGACTCCAGCTCTCGCTAGGAagaatg---cagaaaaaagctttaaACTTTGAAAAACACGAAATATTGATTGCTTCTGTTTTCATCTCATACCAGTATTGGTGTGGATAAATGTACTTCTTGCTACTTGTCAACACCTGACACTTGAGAAAAGTAGTTGGCAAAGTATGTTCAACTA

a score=17406
s chr3            90679420 1145 + 160039680 TGGTCAAGATGATGAACCTCAGACTGTGATGGCCTT--CATCTTGTTTAAAGCTTGGAGAGTCACTTAAGAACCTTAGATATTTGTTTTTTTTT--GTCCTTACTTACTTTGAA-TATTCTTCCAGCCACTCTTTTAGGAGAAAATA----TTTGATGATTCTTTTACTTAAGAATTAAAC--AACAATTTTGACACAGGCCTCCCATGCTTATTGGTAAGTTTTCACTTTTGCTTGAGATACCGTGGTAATGtatttcatgtatttctcataacaaccttgtgagagaatgaatcctgattttcattttgcttatgaagagatccagagaggtaaagaaacttgaaaacctgttaactggtctaccaagtgcagagtacagaccagacccaggttcaccACAGGTGGAAGAGGCTGCTTAATGTGTGTAGTGCTCTCTGCTAGCTTATTTTCTTCTAGTCACTAGATTTTAGTGAGTGGACAGGGCCTAGCTTCCCTCCTCTCCATGCTTGCTTCTCTAACCTTTTCCTATCTTCTCCCTTTAGTGCCTCTGCTGCACAGGGTGCCAGGCAGGTGTCAGTGAACTTGTCTCTGAGGCTCTTTTTTTCTGCCCAGGCCTCCACCCAAGATGCCTCAGGACCTGAAGTCCTGGTGACTCTTTCCTGGTGTGAGAAATCCTCCAGACAAGGATAATTTCCC-GCACACGGAATAAGGAAATTGGCATTTTGATTTCCCTAAGTTCTTGGGGAT--------------TTCCCTATTCTTCCTCAGATGTACAAACCTTTCTTCTAGTCTT-----------------TCCTGTGCTCTGAAATATTGTTGGCTCAGC--TTTCTCCATTTGGAGTACCCCACCCC-AGACTCCAACAGCATACATGCAGCCTACCATTAGTTTGATGCAAATCCTA-------------CAACCTGATTGAAGAAGGACAG-CTCAGTACAGTTTACCTGAAACCCAAACATAAAGTTAGACAGGTTTTACACATCCCCATGGTGTGCAAGGTAAGTATAT---TTTGTAGTTTTAACCCACTACCCAATTCATGGCT------------------------TTGGACTAGAGACTCTTACAAACAAGCTTTCCCTGGCTGAAGTTACAAACACTGGATTGGCTTATAAATTCCTTTGTAGGGTGCTTGTCACACCCAGGTAGAACATGTTTCTTGGGATTTTT
s HiC_scaffold_1 137500820 1097 - 233722169 TGGTCAATAGGTTAAACTCAAAATTATCATAGTTTTGTCACCTTGTT--------------------AAGAATCTTACTTAAGcattcctttttcagtttttgtatattctgaaatATTACTCAAATcagcttttcaaaagaaaaaaatttcttgcaGCTTTTCTTATGcaggaattaaaacaaaaaatttggaCATGGGTTTACTACATTTGTTGATAATTTTGCTTTTAAGCACAGAATTC--TGGTAGTTTATCACATCTATTTCTTATAACAATCCTATAAGAGAGGTGATTACTATACCCATTT---------------------AGGTTAAGAAACTTGACAA---GTTTACTAGTCTGGTGAGTAGAGAGC-TAGATTGGGTGTCTAGCCATCAC------------CTGCTCAAGATACAT---GCACGTTTTTAGCT------------GGCAC-----------GGATGGGCAAGCCCT--------TCCTCT----GCCTGCCTTTGTAGGTTCTTTCTCTTTGATCCCTGAAGAATCTGTGCTGTGAAGAGC-------------------------CTTTAGGGCT--TTGCCTCTGTGCAAGACTTTACCTGTTATGCACTGGGGCATGAGGTACTGGTGAGTTTTTCCTGGTGTGAGCGATCCTTCCAAAAAGTGTAATTTCCCTATATTTATAGCAAGAGAATTGGCATTTTGATTTCCTTAATCTCTTAGGGGTTGTCTCAGTAATAATTCACTTTCCATTCTGGGGTCAAGAAGCCTTCCTTTCAGTCTTAGAAACCCTGAAAATTCCTTTGTGATATAAAACATTGTTGAACCTGCGACTTCCACATTTAAAGCACTTTCCCCCAAGACTTGAATAATCCATGTGTAACCTGTTACTAAGTTGACCAGGGTCTCAACTGCatcactgtctatctaattggACAGTGACAGTCTGAGTGTGAATTTCCTAGAGCATAGATGTAAAATCAGATAAAGTTTAAATATATC--TGGT-----AGGT-AGTACATCACTGTGCAACTTTACTCTGCCACCCATCTCACAGCTAAAACAGACACAGACTTTGTACAACTGAACTAGAGACTCTT-CTGATGATTGTTTTCT-ACTTCGATTGTGTATGCTCccctggtttatttatt-ttttgtaggcCCTCTCTCATCCACAGATCGGACATTCTGTTTTGGAATTTT

a score=29760
s chr3            90691603 2314 + 160039680 TGGGAGCAGCTCTGAGGGAGGCGGAACAAGACTCA-----------------CAAAGTGTAGCAAATGTCCCTGCTGGGCTGAGCTCCTATCCACTGACTAGGGACTGGAAGAGTTTCTACCACCTTATGGAGACCATCTGGTTCTTGTAACTTACAGTTTGACTCCTCAG-GCTCCAGAGGGTCTATGACCTAA-GTCTAAGCTCTTTATGGGACTCAGGGAATTTGAAAT--GCAGAGCCAGGATGAGAGCTCATCCCTTTTACTAGGCCAGTGAATGTTTTCACTCCATCATTCTGGGACAGCCAGTAG---ACTTGAGGGTAACTGCCATTCCCATTCATGTGAGAACCACAGGGACCCATCAGCACACATTT--AGGATTCTAAGTCTGTTGGGAGAGTTGTCTGCTCTCTTGAATCCAGAAAAGAGTTTGTG---------------TTCATTCTTCATGTATCCTTACTCAGTAGAC-----CTCCCCAGACACGGAACACTCTAGGTCCATTTTGGGAAGACTTTGTAAAGGGAAAGGGAAGTCGGGGAAGAGGAGGGGAAGCgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagacagagagacagagagacagagagacagagagagacagagagagacagagagagacagagagagacagagagagacagagagagaaggacagagggagagaCACACACACAGAGAACACTGTGAAATAAGACCATCCCATAGTAAGGTAGGAAGGGATCTGGGGATCTGGGGAAGGGACAACATGTTTCTGTTTTCTGCAGTGACAAGGGACATATTGACAAGCTGGACAAAGT-ACTTTGATTTGAGTGGTGAGGCCTAATGTCAAGGATAGAGACACGGTGAAGGAGGTAAGCCTTAGAGGCTCAGTAC---TACACAGGCTGCTGGCTCTTTTTCTTTTTTGTTATGACTGAACGGAAGGCGTACACTTCAGAAAAGGGCAGGGCTGTTTATCACTCAGAGCCTGGGAAGGACATGTGTGAAAGGAGGCAGAAAGGACATGAAGAACGATGGAATGGATAAAGACTTATTTATTATTTATCTTAT--CATTTCCCAGAACAAAGGCCATTGAGTAAGCCATTCCCTTTAGACTTGGTTGGGCAGCTGTCACATGGC-TGACCTCTTAATTA---------------------CTTCCCACAGCCTTTGCCATGACTGTGGCCATGCCCACGTGGGT---TGTTCTCATGCAGCTTCTCATGACAGGCAAAGATCAACTTTGCCATCAGCATCATACACTCCTCAAAGCTCAGCTGATTGTCCTGGTTTGTGTCCAGGTCCTCCATGATGTCATTTATGAGGGCTTCATTTCTCTTCTCTTTCTGTGGGTGAAATAGAGGAGGCTGTTAG----------GGCTAAGGAAGAGAACTCTGAAGCACAGGGAGTGTCTAGATAGCAAAGGCACAGGAAAACCTACTCC--------------AAAGGGTTAGATTTGAGAA--TAAGAATAACGTACTGAGTGCTCATGATGGAGCAGATGCTAAACATTTGCTAAACACTTTTCATTTT-TTCCTCAGAGAGCCCTCTGCCGTGGGCACTAGGA-CTTTGCCATCTCA-----AAGGCCAGGCAATTAATAAATATAGAAATATC--CATTGTTTATCCTTATAATTACTTTAACAAATAGAAATGGAAACACCTTCTAAAAGGTAGGTCATTTTTGTAGGTCGTTGGCCCTGG-GAGTAGAGGAG---AGGAGATATAAATCTGGATTTGATTTGAGGCACAGTACTACACAGGTTGTTGGCTCTTTTTTTTTTTCTTTCCTCCTGGAGGATTTTTCTTCCCCTACTCTTCTCAGTATCTCTTGCAGTCATACCCCACCCCAGTCGTTTTCTGGGAGGCAACTAGTTGTTAAAGCTTGTTC-AGTCTACTTAGTTGAGGAGGCACCCAAGA-AACCAGGCAGCACGGGGTCT----TAAAGGGGCAGAGCATAGT--TTGCTCTGCTGACCACAAAGGGTGTGATA--------CAGTTGATGGAGACTCAGATAAAGTGAAAAGATCAAGATGTGGTTGCTGACTATCATCTAGCTGCAAGGCTTGCACTCACTTGCTGGGACACCCTGGCTAAGCAGTACCCCTTTCCACAAACTGAGTAGTTCATGAGTAACTTACGTTTGAGGTTCCTGTTTCCATGGTTCTGGTAGAATATGTCAATATAGG--AAGTAAAGCCCATGGGGGGGTGTCACAGAGAAGGTATCTTCTAACATAG-CTTCAAG-TGCAACCTCTGTTTACCCTGAATCAGTATCTTGCTTGTCTGATGTACTCACTTAAGAGA---TATCTCTGCCCCTAATACCTCCCATAGTGACAATTCTCTGATTTTCC
s HiC_scaffold_1 137511119 2074 - 233722169 TGACAGCAGGCCTAAAGGAGCTAGAGCCAGGTCCATCTGGCTACAGGTTTTGCAGAGAGGAGGAAATGCCCCCCAAAGGCTGAGTCCTTAGCTACTGATCAGGGACTGGAAGGATCTCCACCAGCCCA--GAGATCAGCTGGCCC----------CAATCTGAATCTTAAGTGGCCAAGGGGATCTCTGACCCAACATCCAAGCTCCTCACACTCTTCACAGAGTTTTCTATCTGCAGAAGCTGGGTTGGAGCTCAGTTCTGTTG----------GACTCTCTGTCCTCC----TCCTGAGTTGGGAATGAGGTAACTCCTGGGTAACTCCCACTTTTACCAGTGAGGAAACTCCTATATGCCaccagtttgtatttttaaaatgctaggcTTTTTAAGAAACCAAACTGCTCTCTTGAGTCCAGAAATGAGTTTGTAGGCAGTTACACCCAATTCATCCTTT-TTTCTACTGCCTCACTCCACTTTTCCTCCTCAGACATGGCACTGCTTGGGTCCATTGCTGGAAGACCTC-CACAGGAATAGGG--------------------------------------------TTCTATTAG-----------------------------------------------------------------------GAGAGACACAATCAGTGAT-GACTGGGTTTGAGTGGGGAGG-----TGGCCAGTCA-GCATACTGAG-------------------------------------------------------GGGCACAGACAACCcactt-tgttttcttcagtgtcaAAGGCCATGTTGAAATGCTATGCAGCATGACTGGCATCTAAACAGTGGGatctgatgtcagaaa---atatatgGCCATGGAGGTGGGCCCAAGGGGCTCAGAACAGACCCACATGTTGTTGGCTCTCATT-----TTGTTATGATCAAGTTCAGGGGTTGAGCTACAGACAAGGGTAGGACTGTGTAGGGCTGGAATCCTGA----------CTGGCAAGAAGACAGACAAAACATACAGAACATTGGCATACAGAAAGACTT------TATTTCCCCCACGCCCAGCCCCACATTCAAGATGATATAGCACAT-ATTTTCTATGAACATGGTTGGGCAGGTGCAGAGTGGCCTGGCCTCCTAATTAATGGCAATGGCCTTTCACACCCTCTCCAAGGCCTGGCCCATGGCTGTGGTCCGGAGCACGGTGGTGTCCCTCCTCATGCATCTTCTCATGGGAGGCATTGATCAGCCTGGCAAACAGCATGATGACCTCCTCAAAGCTCAACTGCTGGTCCTGGTTTGTGTCCAGGTCCTGCATGATgtcatttatttcatcttcttttctATTCTCACACTGTGGGTGGAGAAAATACAGCGATTAGGCTTGGATGTGGCCAGGGATAGAGATTAGGGAGCACAATCTATGTCCGGATGGCAAATGCACAGGGAAGCCTGGGCCCTGTAGatccatttaaaaattcaaaatttaaaatttaaaagtgac---cTGAGTACCCAGGATGGAGC-----CAAAATCCATGCTAATCATGTGCCAGCTTATTCCCCAGACACTCCTACAACTCAGGTAGGGTGAGCCTCTTCATTTTATGGAGAAGGTCCTACAATTAGTAAGTCT-GAAATGTCCTCATATCTAGTCCTCATAATAAC-TTAACAAGCAGAAGTGG---TATCTTCTTTGAGG-AAACCACATTTTAGGATTGGTGGTTTTTGCAAGCTGAGGAGGCTAGGAAGCA--------GATCTGACTTAGAGTGCAGTCCTGCCC-----------------------CATTCCCTCCT--------------------CTCTTCTCAGTTACTC-------CCTGCTCCTCTCCA---------TTGGAGG------ATTGGTAAAGTTCATTCTTACCTATATAGTAGAGAAGG-ACCTAGGAGAACCAGACAATGCAATATCTTGAGTGAGGGGagagagcaaaataaatgct-TGCTGCCCCCAAAGTATTTGAAGGAAGATGTCAGGTGGGGAGGATTTAGATGGGGCAAAGAGAGCACCAGGTGGCCAC------------AGCT------CTGCTGCCTACTGGCTGTGTCACCTCAGCTA-----TGCCCAGTTCCAGAGCCTAAGTGG--------------------------CCCGTCCAAATG----TGGCAGGG-ATGTCAGGGAGGGGAAATTTGAGCACAT--GGGGACTTCACAGagtgaaacctttcccacatggTCTTCTAGCTGCACCTTC--TCTATCCTGACCCTGAAGGCTTCATGCCTGAGACCACCACTTGTGGGAAGCTGTTAATCTCCCTAACACCTCCCATAG-GACAGTTCTCCATCTTAcc

a score=28710
s chr3            90695067 1214 + 160039680 GGTGCTAGAATTTGTTCTCAGACTGCTGCAGATTGCACC----CTCTTCTCTCACAAGCCAAGCCTCACCTTCATAAAGGTTGCCAACTGTGCTTCCACCATTTGTCTGAATTCCTTCTTGCTCAGGGTGTCAGGGTGTCCTTCCTTCCTAGAGTATTGATGGAAGGTGTCGATGATGGTGGTTATGCTGCGCTCCATCTGAGAAGGTGCTTTGTTG---GCCATCTTCTTGCTCTTCTTTGAAAATAGG--GGAAACAAAAGT---TACAAATAAAAGAATGGGATACCAAGCTTCCCTGACCTAGTCTCTGGCCACTGTTAGGCAAGATAAGGAGGGGAGCACAAAATAAAAAGAACAGGTAGGGTGCTACATAAT-GGAGAGACAGCTTCCC-TCCACATATACACAAAACAGAATTTTGACTATTGATGGAATGC----AAAAAACAAAAATATTTTATAGCA--CAACATTCTTAGAAAAAGTGAAGGAAGATATAAAATGAATA-GATCAACCTAGGAGGGCTTCAAG-AGGAAGGCTTGGAGGAAAGTTGGCCAAGGGAAGGAACAAAAGATCTAGTAGGGAGACTCCTCTCCACGGAAAAT--GAAGCTTACTTACCAAGGCTAAAGAGTCACAGATGTTGGTAAGAGCAGTGTAAGCCCAGTATTTATAGGCAGCTCCTTGTTAG--ATACATGGTTATCTC-GGGGAAGATTGCTTCACAGGTGAGCAGTGTGGTAACTCTGACAGTCAGGGAGCTGGGGTGGGGCAGGAAATGTTCACACAGC---------TCTGATGTTTTGTGAAATTCCCAGCCCTGGGCTTGGAGCTTGTTTGGGGGGAAACTGGTTAGTTGGCTCACTTCCCTTCCATCCAACCTCCCCCTAACCCCTCCCCGCCCAAATCTTAAGCAAGACAGCCTACCTGC--CATCTTTGATACCTTT---CATTTCCTTGTCCTGACTTGTAATATACAGAGGGTGGCAGGCGAATCATTGTGGCCATCTCATTCTGGC----TCTATCCCCTG-AGTTT----ATGGTCTGAGCCTTCTCATGTGTTTTCCTGGCTC----------CTTTGAGGAAGGGTGAGGGGGTCCTCATGGCGTTCTTGAAT---------GGAATTAGTGTTAAGAAGCTCCTCAGAGGTGGTAGCTC----TTTCCCAATGGAGAGGAA---TGTTATGTTCAGAAGGGGACTT----AAGATCATTTAGCTAGCATGTGACCTAGCAGGGGCTGTACTCAGACATCCCAGTTC
s HiC_scaffold_1 137513760 1236 - 233722169 GGAACTAGAATTCTCTT---GTCTGCTGTAGACTGCCCCATGTTTCATCTCACCTTAGTCAAGCCCTACCTTGAGGAAGTTTGCCAGCTCCGTTTCCGTGAGTTTTTTGAATTCGTTCTTGTTTAAGGTGTCTGGGTGTCCGGACAGCCTAGAGTACTTGTGAAAAGTGTTGATAATGGTTTCTAAGCTGCGTTCCAGCTGCGA------CTTATTGGCTGCCATCTTCTTGCAC-TCtgtataaataagaaagaaacaaaggtatGGGTGCTTAGAAGAAAAGGCCACCATGCTTCCTTGAAAGGTCCTCCAGCCAC----aggcaggaagaagaggagatataaaattaaacaagaagcATAGGATGCCTCTTACTCAGGGAAACAGTTTCTCATGCACATGTG---AGAAATGAATTTTGAC-----agagaatgttaaaaaaaaatcaaagcagttgAGGGCAGGAAAAGCTCTAAGAATGTGTGAAGGAAGCTATGACATGAACAGGATCAGCCAAAGGGGTATTCTAGTAGGAGGATTTGGAAGAAAGTTTG----GAGCAGAAAAGAAAGACCTGGCA-GCAGGTTCCTGCCTG-GGAAAGTGGGAAGCTCACTCACCAGAGCGAAGGAGACACTGCACCTGACAC-ACCTGGGCTGCCCCAGCATTTATAGGCAGC-CTTTGGCAGGAACATATGGCCTTCTCGGGGGAAGATTGCCTCACAGGAGAGCCATGTGGCAACCTTGCCAGGGAGGCGGGTAAAGCAGGGCAGGAAATGTTCACATAACATAgctcttttccttgttttgtgaAACTCTCAGGCCTGGGCCT-GAACTGGTTTGAGAGGAAGCTGGTTGGTTAATTCACTTGCCCTCCAACACACCCCTGCTT-----------------GTCCTGAGCAAGTAGACAGGCCTGCAGCTCCTCTGCTCCCCTCACATATCCCCTCTCATATACCTGTGAGGGCCAGAAACTGGCTGAGGACCCgttct--tctttccctttgagtGCAATCTGTACTCTGCAGTCTACAGATGGGCTGCGCCTGCCCCTGGGTGTGTCTGATTCTGTGATAGTGCTTTCAGG-AGGGCCAGCGGGTA--CATGGGTTACTAGATTGCAGGGGTGGGAGTCAGGATTAGAAAGACTCTCA-----GGTGACCCACATTTTTGCATTGTAGAAGAAGACTCTGATGCCTAGAGAAGAACATGAGCAAGATTATAGAGCGGGCTGGTGACATAGCAGGAATGGGACTCAGATCTCCTGGTTC

a score=19134
s chr3           90708844 885 + 160039680 TTAATTTACTTTATTTTTGTTGTATATGCTCCTGTATGTGGTAGCCACAGTTGGAGACTGGGTTCTTTTAAGGGAGTCTCTGTGGTGGATTTTCACAAGATGGTCAATGAATTCCCGATAAGGAGACTTGGTGAACACAGCCTCTGTGCAGAGGTTGGGGGTGGGGGTAGGGTTAAGTTGCTGTAGGTCTTGGAAGATGGCACTGAAGATGGCTTTGGCAAAGTTGCCTAGGGTGGTAGTGAAGCCCCTGGATGATGTGGAACAGTCATCAATACTGGTGTTCAGCAGCAACTTCTTGGGCACAGGAGTAGAGATGATGCCAGTGCCTCTTAGGGAAAGGATGAGATGTGCCATCACA-AGCCACAGCTACCGGTCACCTCGAATGGAACAGTGTAGTGTTCGTCAACCCTATTCCCTCAGTAACTTCTCTGCCCTGGGATGA-----TGGCCAAGATGATGGTCCCTCTGATGGCAATGGCTACTTCTTTGGAGGATTTAGCACCAAGACCAAAGTGACCATTGTAGTCTCCAGTTGCAGTCAGA-GCCTTGAATCTGGTTGATTGGTCAGCCTGAGTCTGCTCCCACACCAACACGATCTTTAGAACTTCAGCCTTTAGGGATGTG-----CCCAGGAAAAAGTCAATAATCTCAGATTCCCTGATGGTCAGGAAGAACAGGTGGATCACCTCCCAGGGTCTTGATCTTCATGTCCTTAACCAGGCAGCTCAG-TTGGTGATGGAAATCCATTCCTTGCCTTTGGCTTTACCTCCATGAGCCCTGTGTTCT---------------CAAG--CATGAACGTGGGTCTCAAGTCTGCTGCTAAA---TCTGCGGAAGCTGC-ATAGCCTCC-------------------------------------TATTGGCCATTTGGTGTTTTCCCAAAGAAGTGACCACTAcaggctct
s HiC_scaffold_1  8999535 868 - 233722169 ttgggTCACTTTGGTTCTTGTATAAAAACCC---TGTGTTGCAGCTACTGCTGGAGC-------------AGGGA--CTCTAGCATGGGTCTTTATAAGATG-TGAGTGAATTTCTG-TAGGGATACTTGGTAAACAAGGTCTCTTTCCAGAGGCTGGGAGT-----------CAGGTAGCTGTAGAGCTGGGAA-ATGACACGATTGGTATCCCTGGCAAAGTTGCCCTGAGCAGCAGCGCACACCCTGACAGGAATACAGCAGTCATAGCTGT--GCCACCATCAGAAGCCTCT-------GGGAGTAG--------------------------------------GACAGCACAGAGCCCCTGCAGCTGGTCACCTTGCAAGGGACGGTGCGGGGCTTGCCCATCTTGTTTCCCTGGTAGCTTCTCCACACAGGGGTGACAGCTTGGCTGGGATGGTGCACCCTCGGATGGCAATGGCTACCTTCTTGGAGCACTTTAGACCCAAACCAACATGACCACTGTGGTCT--ATTGGGCGACAGATACCTTGAACCTGGTCCACTGGCCGGCACGAGTCTGCTTCTGTACT-GTGTGATCTCCTGAGCCTCATTCCTGAGGGATGCTCCCCCCCCACCCAAAGCCCAAGGATCTCAGATTCCTTGGTGGGCAAAGACAGAAGGCCAGT-GCCCTCCAGGGACCTGATCTGCATGTCCTTGACCAGCTGGGCCAGCTTGGTGACAGGGATCCG----CTGTCCTTGGTCTTGCCACTGCGAGCCCCACAGCCTAGCCTCAGCTCCTGCCATGTCCATTCCCGAGGCCCTGAAGGCCACTGCCCAAGCCTCCTTGGAAGCCTCTGTGGCCTCCCACATCCACCCTTTGGGGCCTCCTGCTGTACCAGTGTCATTTGTCATTTTGTGGTTTCCCAAATAAG-AAGCACTGTAATCTTT

a score=19982
s chr3           90708844 876 + 160039680 TTAATTTACTTTATTTTTGTTGTATATGCTCCTGTATGTGGTAGCCACAGTTGGAGACTGGGTTCTTTTAAGGGAGTCTCTGTGGTGGATTTTCACAAGATGGTCAATGAATTCCCGATAAGGAGACTTGGTGAACACAGCCTCTGTGCAGAGGTTGGGGGTGGGGGTAGGGTTAAGTTGCTGTAGGTCTTGGAAGATGGCACTGAAGATGGCTTTGGCAAAGTTGCCTAGGGTGGTAGTGAAGCCCCTGGATGATGTGGAACAGTCATCAATACTGGTGTTCAGCAGCAACTTCTTGGGCACAGGAGTAGAGATGATGCCAGTGCCTCTTAGGGAAAGGATGAGATGTGCCATCACAAGCCACAGCTACCGGTCACCTCGAATGGAACAGTGTAGTGTTCGTCAACCCTATTCCCTCAGTAACTTCTCTGCCCTGGGATGA--------TGGCCAAGATGATGGTCCCTCTGATGGCAATGGCTACTTCTTTGGAGGATTTAGCACCAAGACCAAAGTGACCATTGTAGTCTCCAGTTGCAGTCAGAGCCTTGAATCTGGTTGATTGGTCAGCCTGAGTCTGCTCCCACACCAACACGATCTTTAGAACTTCAGCCTTTAGGGATGTGCCCAGGAAAAAGTCAATAATCTCAGATTCCCTGATGGTCAGGAAGAACAGGTGGATCACCTCCCAGGGTCTTGATCTTCATGTCCTTAACCAGGCAGCTCAGTT-GGTGATGGAAATCCATTCCTTGCCTTTGGCTTTACCTCCATGAGCCCTGTGTTCTCAAGCATGAACGTGGGTCTCAAG--TCTGCTGCTAAATCTGCGGAAGCTGCATAGCCTCCTATTGGCCATTTGGTGTTTTCCCAAAGAAGTGACCACT
s HiC_scaffold_1 71897974 709 - 233722169 ttaattcattttatttttcttgtataaaaACCTTTATGTTGTAGCTACTGCTGGAGCTTGAGTCCTCCAGACAGAGACTCTGGTGTAAGTTTCCTCAAGATGCTCAGGGAATTCCTGGCAGGAAGACTTGGTGAACACAGTCTCTTTCCAGGGGTCAGG--------------------------------------------------TGGCTCTGG-------------------------------------------------------------------------------------------------------------------GGCAAGGGTCAGATGTACAG-----AGCCACCGTGGCACATCACCTTGCAAAGGACCGTGTGCTGCTTGCCAGTCTTGTTCCCTAAGTAGCCTTTTGGCACGGGGGTGTGCAGAGCTTGGCCAGGACAATGGCCTCCTGAATGACGGTGGCTCCTTACTTGGAACACTTCACACCCAGACCCACGTGACCATTGTGGTCCCCAAAGGCAACAGGTGCCTTGAACCTGGTCCACTGGTCAGCAGGAGTTTGCTTCTGCACAGGCCTAATCCTTAGAACTTCATCCTTGAGGGATGCACCC-GGGGAAAGTCAGTCATCTCAGGCTCCTTGATGGGTAAGGAAAAGATACAGATTTCCTCCC-GGGACTTCATCTTTATGTCCTTGACCAGCCCACCCAGTTAGGTAACAGGAATTTACTCC-TGTCATTGGCCTCCCTGCTGCGATCCCAATGGCCCCTGCCAAAGACTCCAGGCCAGGGCCTCTGGTGCTTTAGTCCCTCCCACTGCACAG----GTGTGATCCATTTGTTG-TTCCCCAAGGAAGAAGCTATT

a score=20673
s chr3           90708847 761 + 160039680 ATTTACTTTATTTTTGTTGTATATGCTCCTGTATGTGGTAGCCACAGTTGGAGACTGGGTTCTTTTAAGGGAGTCTCTGTGGTGGATTTTCACAAGATGGTCAATG---AATTCCCGATAAGGAGACTTGGTGAACACAGCCTCTGTGCAGAGGTTGGGGGTGGGGGTAGGGTTAAGTTGCTGTAGGTCTTGGAAGATGGCACTGAAGATGGCTTTGGCAAAGTTGCCTAGGGTGGTAGTGAAGCCCCTGGATGATGTGGAACAGTCATCAATACTGGTGTTCAGCAGCAACTTCTTGGGCACAGGAGTAGAGATGATGCCAGTGCCTCTTAGGGAAAGGATGAGATGTGCCATCACAAGCCACAGCTACCGGTCACCTCGAATGGAACAGTGTAGTGTTCGTCAACCCTATTCCCTCAGTAACTTCTCTGCCCTGGGATGATGG---------CCAAGATGATGGTCCCTCTGATGGCAATGGCTACTTCTTTGGAGGATTTAGCACCAAGACCAAAGTGACCATTGTAGTCTCCAGTTGCAGTCAGAGCCTTGAATCTGGTTGATTGGTCAGCCTGAGTCTGCTCCCACACCAACACGATCTTTAGAACTTCAGCCTTTAGGGATGTGCCCAGGAAAAAGTCAATAATCTCAGATTCCCTGATGGTCAGGAAGAACAGGTGGATCACCTCCCAGGGTCTTGATCTTCATGTCCTTAACCAGGCAGCTC-AGTTGGTGATGGAAATCCATTCCTTGCCTTTGGCTTTACCTCC
s HiC_scaffold_1 31945805 707 - 233722169 attcactttatttttctcatgtagaAGCCC-TGTGTTGTAGCTACAGCTAGAGCCTGAGGCCTCTGGACAGAGACTCCGGTGTGGACTTTTACAAGATGGTCTGTCTGCAAATTCCTACTGGGAGACTTGGTGAACACAGTCTCTTTCCAGAGGTCAGGGGT-----------TTGGCAGCTGGATGTCTTGGA-GATGATATCAATGGTGGCCTTCGTGAAGCTTCCCAGAGGAGCTGTGCAGCCCCTGGCAGAGGTATGGCAGGCTTCAGTGCAGCCAT-CAG-AGAGGCAGCCTGGGCATGGG-GCTTAGATGCTGACAG-----------------------------------AGACATAGCAGCCCCTCATCTTGCAAGGCACAGTACGGGGCTTGCTGGTCTTGTTCCCCCCGCAGCTTCTCTGCAAACAGACAATGGAGAGCTCAGCTAGAATCACTGCCCTTCAGAGGCCAGTGGCTACCTCTTTGGAGCACTTTACACCCAGACCAGCATGACCATTGGGGACCCTAGGAGAAACAAACACCTTGAGCCTGGTCTGCTGTCCAGCACAAATTTGATTCTGCAGGACTGGGATCAT------------CTTTGAGGATGTAGCCAGGAAAAAATCAATAGTCTCAGACTCCTTGATGGGCAAGGTGAAAAGATAAATCTCCTCCAGAGACAT--ATCTTCATAGTCTTGACTGGCCAGCCCTACTTGGTGGTGGGGATCCACTC--TGTCCTGGACCTTTCCACC

a score=59226
s chr3            90725488 3924 + 160039680 [encoded data, 4346 characters]
s HiC_scaffold_1 137521987 4018 - 233722169 [encoded data, 4346 characters]

a score=16041
s chr3            90725541 667 + 160039680 GGCTACAGGGTCAGAA----------TTAGGCACAGTGAACTTCCTCCTGGGAACATGGCTTTCT---CCTTTCCTTCCATCACACCTCATGACCTTGGTAGAAAGGCATTTGGAGTAGTTACTGATAAATGACCTAAATCAATGGCCTTCAGATTT-GAGAGTAG----ATCTCTGTTGGCAAGAAGTTCACTGATGCCAGTAACAG------------CCACCAGACATTTAGGTCCCAGGTCAGCAGGGCTTACTGAAGACTGAGC-TGAAGAAGGAGGTGAGAGAGGATGTGGCAATTGTGCCCTTTCCCGGGGAGGAGGAACCCAAGCTTATTCACAGGGCGGGTCCCTGAG--CTCTCAATTT--GTCTGGTCTTACCTGAGTTCCTTTTGGTGCTCTGAAGTGCGTTGAATCCTAGTCTCAGACCTCTGTCCTCCATCTTTTTTT---------GGGCTCCCTCATGTCTTCTTTTGAGGAATTTGGAGCCAGAGTACTCCATTCCTAGTGAGAGGGTGCCTTCTT-----------------------------------------------------TAGGCAGGGAGAGCAGA------------------AGGAGACACCTGCTAGAGGAGGTAAGAGACCTGGAAACCAAGGCAGAAGGCAGGAACTACCAGAAAGTGAGTGGTGAGCTGGTTGTCCTTTGATCTGCT-GGCTGGAATAGAACAGCATCCCCAGGTAATTCTGTTTTGTATGAGAGCATGGTGGTGTGTGT
s HiC_scaffold_1 137536456 749 - 233722169 ggctgcaagATCAAAAGGCCTAGTAATGACACACTGTGAGACATTTCCTAAGAAGACAGTTTTCTATATCTATTCCTCCATC-----TGTGGACTCCCCTAAA--------TGGAGAAATC-TTGATGAATGACCTCAATCTACAGACTTCAGACTCCTAGAGTAGTACTGCTTCCATGAACTGGAagctctcagatgacagagacaaTGTTTCCTGGCCCCACAAGAGATG-----CCTATGTTGGAAGGGCTTATTGATGGCTGGATATGAGGAAGGCACCCCTGGAGAGTTGGGCAATCAGGCCCTTTCCCAGGGAGGAGGCACCTGGGCTTACTCACAGGGTGGGTCCCCAAGTGCTCTCAGCTAAAGTCTGGTTTCACCTGAGCTCCTCTTAGTGCTGTGGACATTATCAGCTCCCAGCCTCAGATCTCTGTCCTCCATCTTCTGTTAGGGACACAGgactttct----ttttctatctgaGAAGGCAGAGCTCAAATTCTCTCTTCTCAAGGAGAAATTTCCCTCTTAGTATGAGGGACAGAAAGGGTTAAAAGAGGAagacaaaggaggaggaggaagaaaagcagaaagaggagagggaggaggaggaagaggaggagaaaccaGTTGGAAGAGGGACAGGACCTGGAAGCCAAATCTGAAGGGAGGAGCTGCCATCCAATGAGAGGCAAGTGGACTTCACCTTGACCTACTGGGCTGGAATAGCACAGGGTCCACAAGTGTTTCT-----------GAGCATGCGTGTGAGTGT

a score=6173
s chr3            90726776 236 + 160039680 AGGAGCCTTAGCCAGGTGCCGGGCCTTAGAAGGCCCACAGCAAGGCA---------GTAGATAGACAGGGTTACACACAGTCAGGTGGCATGTCATTGGCAGCTGGCACAGTCATGTTAATTGTCAGTGTCTCTCCTAGGGTTGCT---------------TATC---ATTCCCCGTGTAGGTGTCCTGGGGCCACCTGAGGATGCTGTCCTGGCTTCTTGTCTTCTCTATCTTGGTTCTTCTGGCACAGGGTAAGTTTTCTC
s HiC_scaffold_1 137538881 255 - 233722169 AGAAAACTGAGCCAAGTACTA--CCTTCAGTGGGCCACAATGTGGTAAGGGAACAGGCAGATATACTGGGCAGCA---AGT--GGCTGCTTGATTTTAAAAGTAATCATGCTCATATTAACAGCCAGTGTCTCTCC-AGGGTCACTGCCCTCAAGGGTTGGCATCCATACTCTCCCTACTGGTGTCCTGGAACACCATGAAGATGCTGACCTGGCTTCTTGTCTTCTCTGCTGTGAGTCTTCAGGTCTGTGGTAAGTTTTTTC

a score=6876
s chr3            90728569 386 + 160039680 GCAGCTCAGGCAGCAAATGTAGGATGCACTAATTGACATGCCATGCTCTCCCC-ACAGATGTCTTCACTATGGTTTCTCGTGAGGAATGGGGGGCAGAAGCAATTGGTTGCAGCTCTAAGCTGAGCAGGCCAGTGGATGTCCTTGTCATACACCATATCCCTGGACTAGAGTGCCACAACAAAACTGTCTGTAGCCAGAAGCTTCGGGAACTACAGGCCTACCACATCCACAACA---GCTGGTGTGATGTGGCTTACAAGTACGTGGCTGGGCCAGTCATGTGCTCAGAGCT------------GTTCTGCTAAGGTTCTTGTCTTTCACCCGTTTTTCTTGCTTTCTTGGTTGTGG---------TTCTATAGGTTTTGTAATGAATGCAGTA--------TTCAAAGTCTTCAAAC
s HiC_scaffold_1 137541949 407 - 233722169 GCAGCCCCGGCTG----GGCAGGGCTTACTGCATGCCACTCTGTGGTCTCTTTTGCAGGTACTCCCATCATGGTATACCGCAATGAATGGGGAGCAAGACCACTCACCTGCAGTGCTCTGTTGAGCCCACCTGTGCCCTACCTCATCACGGAGCAGCTGCCGGGGATGGAGTGCCAGGAGCAGAGCATCTGTATCCAACTGCTGCGGGGCATGCAGTCCCATTCTGTCCACATCAAAGGCTGGTGTGACTTGGCCTTCAAGTAAG-----AAGTCAGTCAAGTGCTTGAAGCTCATATTCAGTTACCTCTCCTATGGTGCT--CCCCACATCCTCTTCTC-TGCTTCTCCATTTTAGGAGGCTTcatttatattgcttttataatagacaaaataaaacatatttaaaagtaatCAAGC

a score=22793
s chr3            90729999 1081 + 160039680 CTCTCCTTAAGGCGTCTGTAGTTTAGAGGAGTTAAtgatc-catggaggacaggaattagtggttaacttcaccagtccaggctttctgagtgatggttctaacgtgtata-------tacacagttcttcagcaggaaatggtgggt--gactgccagtc-----------accatcaggtctgggtgtcctttctcaagctagttcaggcatatacggtattggatttctctctttggtgttttttctccttgcctcatctctgtggcttctgtgaccactcctcaaacacactgcctgccactatgtccatgtctcaCATGGTGTGTTTATGTAGGAT-GTTACCTAGCAGGGAGAAAACAAATGAGTAGCCTATGTGGAGATCTTGTGGACAGTATGCCTTCAGTGGGAGGTAGGAGAGCCATTTTGAAGGATGTATGGAATCCATGGAGACAAATATTGTATGGCTAGATTAACTGTAGTTTCTGCAGATGAACAGGGT----CGCCTCTT-TCTTCTCAATATTTAGGATGATTTATATATAACTTGGGTAT-------GGGAAG-------TATGAGATGTGTGTGTGTCCTTTTCAATGTTAAGGATGAGAGTACATAACTTGATCTTTCTATTGTCTCAGAGAAATCCATGTCGATACTTTTTGTGAAGCTGCCCTGAGTTCTTCTCCCTTCTCAGCCTAAGTAGGTGGTTTTCTTTGTCAGGGATGTGTACCAGTTCCAGTCAGTAACT-TGCGTTTCC---CTGCCCACAGTTTCCTGGTTGGGGATGATGGCAGAGTATATGAAGGTGTTGGTTGGAATGTCCAAGGCTCTCACGACCAGGGCTACAAGAACATCTCCTTAGGTGTTGCCTTCTTTGGTACCCAAGAAGGTAATGG-CACCTCAGCTGACAGTTCTTCCAAGAGATTTCTGCTGCTCTGACTTGATGGCCTGCTACCCTCTCTGTTTTTCCT---------------GGCATGTTTTTCTCCCTTGGTTTCTA-GAATGCACCATGTGATGTTCTTCCTTC---TGCTCTGCCTTTCTTCTATGTCTCTGCCACA-----TTTCTTTTATTC--CCCAttaattaatttattcacattccaattgcagtccctcttcctca
s HiC_scaffold_1 137525997 1057 - 233722169 CTTCCCTTGAGTGGTTGATGGGAAAGAGGAGTTAATGAGCACCTGGGTTTTAGGGGTTTATGGG-AGCCTCCTCAGTCC----CTTCTAAAGAACATCTTTAAAGTGCATAGTTCCTGTACACAGTTCCTTAGAAGGACATGGAGGGTATGAATGCTGACCCTGATGTGAAAAACATCACAGGTGGTCACACTTTATCAAGTTTCTCTAGCC-----------------TCTCTCATTG-------TTCTTGCTCCCTCAATTCTG--GCTTCTGGAATTACTTCCCAGATGCATTACTTACATCTACATCCTTGTGGTAGGTCCAAGATCTCTGTGAGTCAGTTACCCTACAAGAAGATT-CAAAT------CCTATG--GGGATCTCATGG-CAGCATGCACTTTGGAGAAGGGAGGAGGACCATATTTCAGGATGTGTGGAGTC----------AGCATTGTGTGGTTGGGTCCTTATTAGTTACTGTG------CAGGTTTCAGCACCTCTCCTCTTCTGAGCATATAGGACGATTCATGTACAACTCTTGTGTCTGCACAGGGAAGAAAGATACACAATATGGGAATAGGTCTTTCTGAATGTTAAG------------TGACTTTGTCTTTCTGTTGTGTGCGAAGAATCCATGGAGATTCCTTTTACA----TGACTAGAAACCT---CTTTTATGAGCCTTGGTAAGAAATTTTCTCTCTCAGGAGTGTGCTATCATGTCAGCCACCAAATCTACCTTTGCTTACTGTGTACAGCTTCCTGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTCGGCTGGAATATCCAAGGCCTGCACATGCAGGGATAC---AACATCTCCCTGAGCACTGCCTTCTTTGGAACCAAGGAAGGTAATAATCACCCCTGATAACCCTTCTTCCAaga---ttcttttgtttcattttcacacTCTGCTACCCTTTCATATATCTCTGAAGATTACTGACTGGGCATGCTCTTCTCCCTTGGCTTCCATGAAGTTATCATG----GTCCTCCCTCCAATTATTCTGACTTCCATATCCATCTATGCAGCAGCCCCTTTCCTCTAGTCAGCTCACACATGGATTTGCTCCC----------CAGTCTCTTCTTCCCA

a score=5285
s chr3            90730715 133 + 160039680 CTTGCGTTTCCCTGCCCACAGTTTCCTGGTTGGGGATGATGGCAGAGTATATGAAGGTGTTGGTTGGAATGTCCAAGGCTCTCACGACCAGGGCTACAAGAACATCTCCTTAGGTGTTGCCTTCTTTGGTACC
s HiC_scaffold_1 137531324 126 - 233722169 CTTGTGCTTTCT-------AGTTTCCTTGTGGGCCAGGATGGTGGTGTTTATGAAGGGGTTGGCTGGAATGTTCAAGGCTGCTCCACCCCTGGCTACAGTGATATTGCCTTGGGCATTGTCTTCATGGGCACC

a score=5927
s chr3            90730721 141 + 160039680 TTTCCCTGCCCA----CAGTTTCCTGGTTGGGGATGATGGCAGAGTATATGAAGGTGTTGGTTGGAATGTCCAAGGCTCTCACGACCAGGGCTACAAGAACATCTCCTTAGGTGTTGCCTTCTTTGGTACCCAAGAAGGTAATGG
s HiC_scaffold_1 137549225 145 - 233722169 tttctttgcccaATCTCAGCTTCCTGGTAGGCGAGGATGGTGGAGTGTATGAAGGGCTTGGCTGGTACAGCCAAGGGTCTCACACCTACGGATACAATGATATCGCTCTGGGAATTGCCTTCATGGGCAATTTTGTAGGTAAGGG

a score=8843
s chr3            90730723 140 + 160039680 TCCCTGCCCA-CAGTTTCCTGGTTGGGGATGATGGCAGAGTATATGAAGGTGTTGGTTGGAATGTCCAAGGCTCTCACGACCAGGGCTACAAGAACATCTCCTTAGGTGTTGCCTTCTTTGGTACCCAAGAAGGTAATGGC
s HiC_scaffold_1 137543438 141 - 233722169 TCCTTGCTTGGCAGCTTCCTGGTCGGGGATGATGGCAGGGTATATGAAGGTGTTGGCTGGAATGTCCAAGGACTGCACACTCCGGGCTACAACAACGTCTCCTTGGGTATTGCCTTCTTTGGCAGTAAGATAGGTAATGGC

a score=20695
s chr3            90732314 1281 + 160039680 TAGTTTCTTGTTTTATACTCAGTACACTTTGGGACAGTCCAGGTAGATTCCATTATTCTTATTACTACAGTGTGCAGCCCAAGTTTCAGAGAAGCAGACAACCCAAAGTAACACA-CCATGGGGAA-GAAGTCAGAACATAAGC---------------------CTGAACTTCTC-------------ATTTCCAATAAGTGGGTGGGTCCCA-------------CAGAACCA---------------CTGGGTCCAG----------------------------GATGCCTGTTCAGTTT------------ATAGATTTATTGGT-------TGGTTTGGGATTTGAAGCATGT-ACTTTTTAGATCC-CATGCTGTTCTTCATGAGCAAGGAGTTTGCTAATAGTACCTGAGTCAGAGCTTTGTGCTAAGAAAAATGATGGGAGGTGCTGGTGTGAGCAGGGAGCTTA-------CTGGGCATAGCTACCTTAAAGG------TCTCCTGTGGATGGAGGGTATGGTCATGTA-------------------GGTCGTGG-AACATCTTTGGGGAGGGCTTCAACCTGAGCCACCCAGAGCCCAGCTATAGCAGGTCCTTGATGAGCACCTCTCTGACCT--------------GTCCCCATGGTTTCCTCTAGCAGTT--GTATAGTTTGTC-------CCTGGTTTCTTTCCACTGTTCCCTGACAAT--AGGCCAGACTGGGA-TATCTATAAACCACTCTCTTCCAGGCCATAGTCCCAGCCCTGTTGCTCTGTCAGCCATGAAGGGCCTGATTTCCTATGCTGTGAAGAAGGGACACTTGTCATCCAAGTACATCCAGCCATTGCTTGCGAAAAGTGAAGACTGCCTGGTCCCTCCACAGAAGGGGAAACAGAAGAAAGGTGAGAC----------------------------------------------------CCAGGAGTGAC----TCTTTAGGCTTTC-TTACATCCCTCCTAGGAGCCATGTAGTTACCTAGCTTTCTAAAATACTGGTGCTGGCAAACCTTGAGAGGAACCTCTCAGGCTACCTCTTTCTGCATTAGCTGT---GGTGACAGCACCCCATCAGAATGAGTGGTGTTATG-GGAACAATCTTTCTGCAGTCACTCCACACTTGCTTCCTCAGCA------AAACTT-----ATAT-CTAAGgaacaaagcacaaaaaccgttgagtcacagagc--ttcagtgcagaggggagagaaagataaggaacaaattgaacaggtaaaagactcagtgtgttgttatatggtcaaaactgttagggaagaaaata----ggcatagaaaaggACTGAGTGCGTTACTGCAC---------AGTTCTTTTTCACAACTGCACATTTACAAATAGAGAAAATAACAG-------------------------AAACTTGACATTGTCACTC----TGACATTAAAGGAGGAACT--AAAAAATTTAGACAA---GCTAGATGCTGTTTTGGGTTAACAAGCAGTGACAGCA
s HiC_scaffold_1 137527317 1550 - 233722169 TAGTTTATGATTTCTTCACCAATATCTTTTGAGATAGTTCAGGCAAGTTTCATGATTTCTGTTACTATAGTGTACAGCCTGAGTCTCTGAGCAGTAGGTAGCCCAGAGTGGCATAGccgtgagaaaagtaactaaaacatgtTCTATGCAAGAAGACTCTTTGTGCTGGAcctctttatttacttatttatttctttttatttatagacttgcaatttttttttttgcagagcaagattttattttgattttagggTCAGTGGAAATTGGTGTACTTTTCACAACagagatttcttttaaattctacttAAGTTAAATGTACATATAAATAATGCCATGGCTTGCAATTTTGAGCATGTCACTTTTTAGAGCTTCAAGATGGCCTTAATGGAA-------TTAATAGTAGCATCAACATCAGAGATTTGTAGTGAG------GATTAAACGAGTTAAGGCAAGTAAAGAGCCTGGTACGTGCCTGGCAGGGATGTGTGGCAGGAGCCACTGTCCTGAGAA-GGTGGGTGCTGCCCAGCACAGTGCCATCTCTGAATGAGGTCTTGGCAAGCTATTAAGAAAAGGCTTCATTCTGAACCACCGAGAACTCCA-TCTAGGTGGTCCTTGACTTTCATGTCTCTGACCTAAGAGATGAGTTCcgtccctttcttttcttccaacaGCTAAGCAGGGTCTGACAGggcatcttgttttcttcattcagCTCCCCGGAAACCCAGGTCAGGTTGATACTTTCCATAAATTACTGTCTTTCAGGCCATAGtcccagccctgcagccctgTCAGCCATGAAAGGCCTAATCTCCTATGCTGTCCTAAAGGGCCATCTATCACCCAGGTACACCCAGCCACTTTTTGTAGAAGGTGAAAACTGCCTGGTCCCTCCTCAGAAGACAATCCTAAAGAAAGGTGAGACCTCCAACCACACCGGGCTCTTTCCAGACTCACCCACTGACCTTCAGACAATACCAAGAGTGACCTCTTCCCCAGATTCTCATTAGATTCTTCCCGGAAGGCTACCAGTCATTTAACTTTCTGAAACTTTGAGGCTGAAAAATTTTGACAGAGATGCTCCAGGCCACCTTTCTACCATTCAGACCTCAGAATGATGGAACCTTGGCATTGTGCCCGGGTATATATATGCCTCTGTTTATTCCATTATTCCACAAGAAGTTACTGAGCACCTGCTAGACCTTGAAGATATACAAAGGAAGCAAACACAAGAAATCTTTGGTCTTGTGGCATTTCATTATAGAGAGCAGAGAAAGGCAA-CAGCAACATGAACAAGTAAAATACTTGGTGAGC-----CCAAGTGAAAAGTActaggaacaaaaaaaaaatgacttacaAAGGGCCACAGTACATTTGCGTGCATATTTATAAATGCTTATACACTAACACATATTTTTGGATAAAAATTAGAACAGCACTAACAGACTTAAGTACTCAGGAAAACTTAA-GTTACCACTTATAATGAATTTATAGGAAGAGTTTAACAGAGTTTAGATAACTGGGTAAACACTATTT---GTTCATAAGGAAAAACATCA

a score=6972
s chr3            90732906 176 + 160039680 CACTCTCTTCCAGGCCATAGTCCCAGCCCTGTTGCTCTGTCAGCCATGAAGGGCCTGATTTCCTATGCTGTGAAGAAGGGACACTTGTCATCCAAGTACATCCAGCCATTGCTTGCGAAAAGTGAAGACTGCCTGGTCCCTCCACAGAAGGGGAAACAGAAGAAAGGTGAGACCCA
s HiC_scaffold_1 137544447 176 - 233722169 CACCCTCTTTAAGGCAGCAGTCCCAGCCCAGCTGCCTTATCAGCTGCAGAGGGCTTAATTGTCTACGCAATCCAGAATGGTCACCTGTCACCCAGGTATATTCAGCTGCATCTCTTGAAAGAAGAAGTCTGCTTGGGCTCTCAACATCCAGTGATATCCAGTAAAGGTAAGCCCCA

a score=18811
s chr3            90735056 697 + 160039680 GCCTTTTCTTAGGCTTAATAAAGTTTGAAGAAACTTGTCCTTATCGTCATGAACCA-TGAATCAGTTTGAGCACTTCCTTGAGACTGCTGTCATCTCTCCATATTTAGGATTGCTTTATACAAGCAGAATCTTATGGCTTTTAAATGTCTATCAAACATA--CTTCCATAATAAAGCTTCTATGTT-TGCTGCTTGGAT-TAGTATAGTCCAGAGTAACACAGCCAGGATT-GGGAAGAAGTTTGAGGGTGGTTTGGCAAACAAATCTCAAGAAGCAGAGGATTACAGCTGCC-------CTCAGTAGTCATGT----GGTTGGCATGGGGTGGTAAAATGAATCCTCTATGCTTTGTTGTTGttttttttttttttttttttgttttgttttATCCTACAGCAGCTTGTCCCCACATAGTTCCACGGTCTGTTTGGGGCGCGAGAGACTCCCACTGCTCCAGAATGACTCTCCCTGCGAAGTATGCCATCATTCTTCATACTGCTGGGAGAACATGCAGTCAGCCTGATGAGTGCCGCCTGCTGGTCCGAGATCTCCAGTCGTTCTTCATGAACAGGCTAAATGCATGTGACATTGGGTATAAGTAAGCCATCCCCAAAACAGGGTCTT-TTTTCCTTCAGTGGG---AGAATCAGGTTCTTTCAACAGGTGGGAAAGGCAGATGATTTTAATGGATTACTGACTATATGAGAGACC
s HiC_scaffold_1 137529044 651 - 233722169 GTCTTTTCTTGGGCTTAATGAAATTTGGAAGCAATTGTTTCTATCATCCTAAAGCACTGAATCAATTTGAATTCTGTCTTTGGACTGATGCCGT-------------GTATTGCCTTACACTGACAGAGTTCTATGGATTCCAAGTGACTCTTAAAGACAGTCTTTTAGAATAAAGAATCTGGATCCTGCTGCCGGGATGTATCCTGATCCTAAGACCCACAGTCAGTGTCAGGGCTGGAGGCGGAGGGCAG----------------------GCATAGGGTTG-GGATGTCTCAATCACCTAGGAACCATGTAGATGGCTGACATGGGTGAGCAAATCAAATTCTCtacatcttgtt----------------------------tcttttctcccaaaGC---TTGCCCCAGCATTGTTCCACGGTCAGCTTGGGGGGCCAGGGTGACCCACTGTCGCAAGATGATCCTCCCCGCTAAGTATGTTATCATCCTCCACACGGGTGGGAGAACCTGTAGTTCAGCTAATGAGTGCCGTCTCCTGGTCCAAGATCTCCAATCCCTCTTCATggacaaacacaaaaagtgtgATATTGGATACAAGTAAGTATACACAAGGCCAGGGTCTTCTTTTCCCTTGGTGGGAATAAAAATTGAACCTCTGAAACAGTGAGAAAGAAAACTAACATATATCAAATACTCACCATCTGACAGGTC

a score=8275
s chr3            90735413 235 + 160039680 tttttttttgttttgttttATCCTACAGC--AGCTTGTCCCCACATAGTTCCACGGTCTGTTTGGGGCGCGAGAGACTCCCACTGCTCCAGAATGACTCTCCCTGCGAAGTATGCCATCATTCTTCATACTGCTGGGAGAACATGCAGTCAGCCTGATGAGTGCCGCCTGCTGGTCCGAGATCTCCAGTCGTTCTTCATGAACAGGCTAAATGCATGTGACATTGGGTATAAGTAAG
s HiC_scaffold_1 137545998 237 - 233722169 TTCTCATTTCCTTGGTTTTTTACTGCATCCCAGTTTGCCCCAACATCATCCCACGATCTACTTGGGAAGCCAGAGAGACACACTGCCCTCAAATGAACCTCCCAGCCAAATATGCCATCATTATCCACACAGCCGGAACAGGCTGTAATGTATCCATGGACTGCCTGCTTCGCATCAGAGGTATACAGTCATTTCACATGGACAAACAAGATTTTTGTGACATCGGATATCAGTAAG

a score=40437
s chr3            90738736 2828 + 160039680 gttagctACTGTGGCAATTTACTCCTGCAGAGATCAGCCAATGTTTTAATTCTGGGTCCC--------TCTAGAGCCCCATTCTTCCAGACATTTTCACTAGCATACCACTCACAATGACGCTCTTACTGGTTCTGAAACTTGG----TGCTTAGTTGTGTaaaaaaaaaa------------------------aaaagaaaaaaaaTTGAGTGAACTGATGAAGGCAAGTGTCA--GTCCCTGAGTGTCTCTCTTTCATGCTAATCTCCATCTCTCCT-GTGCTTCTTCAGCTTCCTCGTGGGCCAGGATGGTGGTGTTTATGAAGGAGTGGGCTGGAATAACCAAGGTTCCAAAACTGATAGCTACAATGACATCTCTTTGAGTATCACCTTCATGGGCACCTTCACAGGTAAGTGGAG-GATTTGGGTAGTTGCGATCCTTGTGTGATGTTTGA---GGCGAGTGTTTGATTTGGACTGGAAAGATATCAGTCTCAGACGTTGTTTAAA-GCAT-CATATGCTGAAGCTCTGTATTTACACTTATCTAAGATGA-GTGTGGTTGAAAGTGACCCTCAGATCCCAGAGAGTAGGTATTCTGTAGTTACTTTTTTCACACACAGACAAAACTTAGtctctctctctctctcactgtctttcctccctctttttatcCTTTtccgtccgtccctccctccctccctccctctccctccctccctccctccctccctccctccctccctcattcctccctccctctctcttttcttcctcccctccctccccccTCTTTCTGCTACAATGAATGGGTAAAGCAAAGAAAAATGTTGTGAGTAATTCCAGTTCCCCGTTGTAACT--ATCCTATTTTGGTTCTCATGGTAACAATTCTAGATCATGTTAGCCTTATACAGCAAAGCAGAATTTAGGCATTTGCCTTGACTGCACTGAAAGTATTCATT-----TACTCAGAGCTTCTGACTAGAGCTACGGTGTTGTTGTT----------------TTGAGTTTCTGGAAAGGTGAGGTACTGTTATTGCT---------------------------------ACACATTTCTGGTTGGTTTGAAGATGAGCCCTACA-----TGGA---GGCTAAGGGCATGTGAGGAGAGGCTGAGTATTGGCTTTGTTGGGAAGGCCTGTAAAGCTTGCTGCTGCTGACATTCTGGGTGAGACAA-----CTCATTGTCACAGATCT-GTACTTTGACGTTTGGTTGGTATGGCCA-----TTCCCCCAACTCAACAATAAAAGTGTTCTTTCTTCTCCCACTCTTCTCCCACTTTTGTCAATCAAGTATATCTCTAGGCATTGCCACACAGTCCTTAGGT-TACTGAAGTAGTTCTAATAGAGAACTATCAGGACAAACTTTCACTGTAGGAAAACATTTAGAGT-TAGTCA---GAACTGTATTTATATTTCCAGG---AATT---TAGA-GTCAGGAAGACTTTGAGACCAAGACATGTAAAATCTTGATCTGCTGTTCTGTCTGTCTATAGAATGGCTGCCAAATATCAAATATGCTATTTTAGTGGTAGG-CTGGGTGGG------TTTTGGAACATAATCTGTCATGCTCTGGGCACCTTGGGATCTTACAATCAGTGGTTTGGCTGTGTTTTGCAGGTTCCCCACCCAATGCAGCTGCACTGGAGGCAGCCCAGGACTTGATCCGGTGTGCTGTGGTCAAGGGGTACCTGACCCCCAACTACCTGCTAATGGGCCACAGTGATGTGTCCAACACTCTGTCCCCTGGGCAGGCACTGTACAACATTATCAAGACGTGGCCCCATTTCAAGCACTGAGGGAAGCCCTATCCCTATCTGAGGATGCTCTTCCTCCTGCTGGGTGTCTGTCTTTACCTTTCACCTTGGATTAGTATATCTGTCCTCTCATTTCAAAAACTTTACCTTGTTCATTTCCTAGATTGGGATGACCTTGTCCTCTCTTGGTGACATTTACCA--------GTTTCCCCCAAGTTTTGCACTTATAG--TCCCTTGAGCCTGAGCC------AAGGCTCTTCTCTCCTAGGTACTTGTCTGCTCAACCAGGCCAGGTAATGGTCTGATTCTTGTCATACCTTATTCCCTAGTTATCTGCCCCCCTGTCTGGTACCTATGGCCTGTCTGGTACCTATGGCCTGTCTGGTACCTATGGCCTGTCTGGTAGTTCCCAGCTCTCATCCGTAGCCCA-GGGAGAGTGCCCTCACCTC--CTCTGCTCACACATCC---ACTTGTGCATATGTGGATGCCCCCT------------------------TGCAGACATCCAGGTCCTCTTCTAGATTATGAGTTTTCCAGAACAGCCGCAGAATTTTCTTTCCCACTAGGTAGCCTGTGTCAGCTCCTGATCTGTGTTTAAATGTTTCTAGATATTATAGATGTTTGTTGGAGAAATGGAGGAACAAGTTAA----AGGCCCCAGTCCTTTTCC-----AAAGGTTTGCCATCACC---CCTCTGTGGAAACCTTGCTGT--CCAGTTTCCCATCCTGCCATTATTCTTGGCACTGGTACTTCTTGGTTGGAGGCTCAGAGCTGTGGTGACTTATGTGTCCATAACACATGCCATGTCTCTGAAGTCCTGTGCCATTGTATCCATAGAGCACCCTGAGTGCCAGGACCATATGTTCTTCCAAGGGCAAGGCAG---ACTGACAACA---------CTTGCTGCCTA---GTA----------CTGTGGT--CTCCTGAAT--------------GAGTCTTGCTGGTCTCTGAAACCCTCCCTACCTTCATAATTTGTTGTAAGCACATGAAGCCTTATCTTACTCTG--TGTTGTTCTGAAAAATGGATGGGAGAGTAAGAGGAAAAGAGGAGAGATGAATAAAAGGAATATAGTATAGAGATTGTCTTGTTAAA---ATTTTCATAAAATAAAGTTTTATCTTATTTTATATGCTTTTGTTTCTCTTATTTTAGTAAAAACAAATATAAGTACTCTC
s HiC_scaffold_1 137531046 2743 - 233722169 GTCAGCCATGGTGGGAGTTTTCTTCCACAGAAACCTACAAGTGCTATATGTTGGGCTTCCATTTACCATCTTGCTTCCCCATTTCCCCCACTGGTTTACTAGCACATCAGTGTTAAAGACTTTTTATTTGTCTCTGTAATTTAGACTGTTATAGGTAacataatatattaatttatacttTAATAGATTATAGCTAAAAGATAAAGgcatgaatgaattaatgaatacaGACAAAAAAGCAACTCAAAGTGCCTCTTTCATGCTAGTCTCCATCTCCCCTTGTGCTTTCT-AGTTTCCTTGTGGGCCAGGATGGTGGTGTTTATGAAGGGGTTGGCTGGAATGTTCAAGGCTGCTCCACCCCTGGCTACAGTGATATTGCCTTGGGCATTGTCTTCATGGGCACCTTCTCAGGTGAGTTGAATGAATTGGGTAGAAGTGGTTTTT-TGTGGTGTTTGGAAGGAGGGGTGTCTGATGTGAACAGTAGAGATATTGAAATAAACCATCATTTAAATGCCTACACATATTGAGAC---------------GTCTAATTTGACATGTAATTAAGTGTG-------------------TAAGTCTCTT--------TCTTTTCCAATATCTAAGAAACATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTATATGAAATCAGGGAACACTCTGTGAGTATTTTTAGATTATCTTAACAGGTGCATCCTTCTTTGGTTATCATAG-AACAATGTTAGGGCTATTATGCCTTACATGTCAAAGTACAG----AGAATCCTGATTG--TGCATTGAGAGTACACATTGTGGATTGTCAAGGCTCAAGGCTCTTGCTAAGAAGTTATTTATACTTAGGAGCTTTTAGTTGAATCTATGGAAAGA-GAAACTCTGTCACTGGGGTTGGTTCAGACCAATATTGGAATGGGTATAGAACACATATAGGGGTGATTCAGCACTGTGACCAACTGACATTGGAACTGGTTATGGTAAAATGCAGGAAG----CATACCTGTCACTAAAATAAGGTTTTCTAACCTCAGTGCTATTGACATTTCAGATCAGATAAAAATCTTTGTTGTTGGGTGTCCAGTGTTTTGTAGGATGCTTAGTATTACCCCTAGCTTTCATCAATGAGATAATGACAGGATCTT-----------CACATCTCCCACTTTTGACAACCACAGATACCTCCAAACATTGC-ATAATGTCCTCTTGTGTACTAAACTCCCCCCAA--GAGAGCTAGAAGATTAAACATTTGCTATGGCAAATGGCTTTGTATATATTCAAAAgaattgtgtttattttctcagGCTGAATTCTTTGGACTTCAGAAAATTTTTGGAACTGACACATCTAAAATCTTGA-CTGGTTTTCTGTCT-TCTGTAGTGCAACTGCCAAC-----AGTGGGATAGCGTGGTGGTGGTTCTGGGTGGGATAGGGTTTAGTAGTGTATCCTGTCCGACT--GAGCATGCTGAGGCCCTATGATCAATGGGC-GGTTGTGTTTTGCAGGCAACCTACCCAATGCTACTGCACTAGAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGATCAAAGGGTATCTGACCCCCAACTACCTACTGCTGGGCCATAGAGACGTGGCCAACACGCTGTCCCCTGGACAGGCTTTGTACAACATCATCAAGACATGGCCTCACTTCAAACACTGAAAATGGCTCAAGCTCCTTTGGAGGCTTCT-TTCCTTTCATTGGGTCTCTGTTCTCACCTCCCATTTTGCTTCAACACTTGTCTCTGCCTCCTTTGCCAGCCCTACTTTGTT------CCAGGTTGTGATGATTATGTCCTTTCCTGCTAGCATCCTCCACCACCACCAGATCCCCATAGTTGGGCATTTATAGCCTCCTTTGGTCCACAACCTCTCTTTACCTTCCTGTCCCCTGACCATGCATCTGCTCAG-CAGGATGAGACCCAGCGTGGACGCTGTCATACTT-----------------CTCCTTTGATTTGTACCTGTCTCT------GTGCCTAAGTTCCCTCCT---CTTGCAGTCTGTCCAGCAG-CCTCAGCCTTCACTCATCACCCACGCCATGATACCCACCTCTCATCTCTGCTCACACATTATTGTCTTGTACAGCTTTGtatgttttccttatttaaaagGTATAAGTTTTTATACATATGTCTGTTATCATTCCTGAATTTTAAGTTTCTCCAGGAAACAGccaagttttatttattactaTGT------CCTCAGTTCCTGAGGAGTATTTGAAATTTACTAGATTCTTTAGATGTCTGATgaagaaatggaagaataaataaatgagtgggCCCAGTCTCTGTTTGTCTGGGCAGTTTGTTTTGCCCTGTCCTCTTTGGGAACTCCTCTGGAAACAGTTTCCTCCACTtgcatt-ttctca----tgtttcttcACAATCCGAGGCAGAGAATTCTTGGTAT-----TGTCTGTAATGGGTTCTGGGTCTCCAGTATCCTGTGTCCCTGTTGGTCTGGAATAGCCTGAGGGCAGGTACCACACACTTCTGCAGGGCCAGGTCTGTGTCCTCACAGGAAGCTCAGGGCCTGCTGCCTACATGTACATGGCCAGGCTGTGGTGGAACCTGGACAGAGTGAGGTCTCAGGGTCCTGATGG--TCTGCAGCCCTCTTATTCCT----ACTTGCTGGAAGC-CA-GAGTCCCCCTCCACCTCTGGCTCTTGGTCtacaaaaaagaaaggggaatAAAAGGAGATCAGGAAAG--------AAGGTA--------AGAGGTTGtcatgttgaaaatatttttatttctttagattttGTCTTG---AACGTGTTTCTGTAG-TCTTATAGCATCAGAAGTAAATGTAAGAGTTctc

a score=7382
s chr3            90738986 144 + 160039680 TCAGCTTCCTCGTGGGCCAGGATGGTGGTGTTTATGAAGGAGTGGGCTGGAATAACCAAGGTTCCAAAACTGATAGCTACAATGACATCTCTTTGAGTATCACCTTCATGGGCACCTTCACAGGTAAGTGGAGGATTTGGGTAG
s HiC_scaffold_1 137549240 144 - 233722169 TCAGCTTCCTGGTAGGCGAGGATGGTGGAGTGTATGAAGGGCTTGGCTGGTACAGCCAAGGGTCTCACACCTACGGATACAATGATATCGCTCTGGGAATTGCCTTCATGGGCAATTTTGTAGGTAAGGGGTGAGCATGGGTAG

a score=5157
s chr3            90738987 126 + 160039680 CAGCTTCCTCGTGGGCCAGGATGGTGGTGTTTATGAAGGAGTGGGCTGGAATAACCAAGGTTCCAAAACTGATAGCTACAATGACATCTCTTTGAGTATCACCTTCATGGGCACCTTCACAGGTAA
s HiC_scaffold_1 137543449 126 - 233722169 CAGCTTCCTGGTCGGGGATGATGGCAGGGTATATGAAGGTGTTGGCTGGAATGTCCAAGGACTGCACACTCCGGGCTACAACAACGTCTCCTTGGGTATTGCCTTCTTTGGCAGTAAGATAGGTAA

a score=27066
s chr3            90740241 984 + 160039680 ACCTTG-GGATCTTACAATCAGTGGTTTGGCTGTGTTTTGCAGGTTCCCCACCCAATGCAGCTGCACTGGAGGCAGCCCAGGACTTGATCCGGTGTGCTGTGGTCAAGGGGTACCTGACCCCCAACTACCTGCTAATGGGCCACAGTGATGTGTCCAACACTCTGTCCCCTGGGCAGGCACTGTACAACATTATCAAGACGTGGCCCCATTTCAAGCACTGAGGGAAGCCCTATCCCTATCTGAGGATGCTCTTCCTCCTGCTGGGTGTCTGTCTTTACCTTTCACCTTGGATTAGTATATCTGTCCTCTCATTTCAAAAACTTTACCTTGTTCA--TTTCCTAGATTGGGATGACCTTGTCCTCTCTTGGTGACATTTACCAGTTTCCCCCA--------AGTTTTGCACTTATAGTCCCTTGAGCCTGAGCCAAGGCTCTTCTCTCCTAGGTACTTGTCTGCTCAACCAGGCCAGGTAATGGTCTGATTCTTGTCATACCT-TA-TTCCCTAGTTATCTGCCCCCCTGTCTGGTACCTATGGCCTGTCTGGTACCTATGGCCTGTCTGGTACCTATGGCCTGTCTGGTAGTTCCCAGCTCTCATCCGTAGCCCAGGGAGAG-TGCCCTCACCTC--CTCTGCTCACACATCCACTTGTGCATATGTGGATGCCCCCTTGCAGACATCCAGGTCCTCTTCTAGA----------TTATGAGTTTTCCAGAACAGCCGCAGAATTTTCTTTCCCACTAGGTAGCCTGTGTCAGCTCCTGATCTGTGTTTAAATGTTTCTAGATATTA-TAGATGTTTGTTGGAGAAATGG--------AGGAACAAGTTA---AAGGCCCCAGTCCTTTT--CCAAAGGTTTG--CCATCAC-CCCTCTGTGGAAA--CCTTGCTGTCCAGTTTCCCATCCTGCCATTATTCTTGGCACTGGTACTTCTTGGTTGGAGGCTCAG----AGCTGTGGTGACTTATGTGTCCATAACACATGCCATGTCTCTGAAGTCCTGTGCC
s HiC_scaffold_1 137549950 945 - 233722169 ACCTTGTAGCCCTAATGATTGATTGAGTAAATGTGTTTTGCAGAAAAACCTCCAAATGCAGTTGCGCTGAAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGGTCAAGGGGCACCTGGTCCCCGACTACCTGCTGTTGGGCCATAGTGATGTGGTTGATACTCTGTCTCCTGGAAAGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAACACTGAGAGCAGCCTCCTCTCCTTCTGGGGCTGCTCTTCCTTTCACTGGGT-TTTGTCCTCACCTCTCATTTTGCCTGAGCACTTGTGTCTCCCTCCTCTGCCAGCCCTACCTTGTTCCTTTTTCCCAGGTTGGGATGAGAATGTTCTTTCCTGTTAACATCCTCCAGTGTCCCCAGGTTCCCACAGCTGGACACTCACAGACCTCTATGTCTGAG----------------------------CTGCTCAGCCAGATGAGATGAGGGGCTGGTTCCTGTCCTGCTTGTATTTCCCTTTGTGTCTGTCTTTTTGCCTGGTAT------CCCGTCT----------------------CCTGTGGTCTGGCTGGCAGCCCCCAGCCCTTGCCCATCACCCAGATAGGGTTGCCCACCCCTCTTCTCTGCTCACACAAGCACTTGTACAGATATGTATG-----------------AGGCTCTTATTTAAAGCCTGTAAATGTAAGTTTTTTCCAGGG-AGTagctgatatttatttatttctatgt------cttcAGTTCCTGAGCAATGTCTGGAATTTAATAAGTTTTCTTAGATGTTTATTGAAGAAATGGatgaattaaagaataaattagtcGTGGCCCCTATTCACTTAGCCA---GTTTGCTCCATCCTATCTTCTTTGGAAAGTCATTGTGGACAGGGTTCCATCCCTCCTGCATCTCTCTATCCTATTCCCTTCCAATCTGAGGTTCAGTGACGGTTCTGGTAGCTTTTCTG----TAATGGGTGCTGTATCTCTATGATCCTATATC

a score=24588
s chr3            90775392 2810 + 160039680 TGGATTCAGAAATGAATTAGTA--CAG-------------ACCATTGTCCACACTGCTAGAGTTCCAATATTACTTCCCTGACATGACA-------------TGACAGAAAAACTTTTGGTTGAATAGAATTCTGTTAAAAGACTTTGTTGGCAGAGCTTAGTGAAGATGATCAGGGCCAAGTTTGGAAATGGCTGG----CATGTTGATGGG---AGATCAACTGCTTT--TCCCTTCA---------------TTAATAGGTTAGTCATGTGAACTTCCACTCAAAAAGTAGGGTATA--GTTAGATGGCGATATGGTGACAGATTTACACTGGAAAATCATAG--------CAAAAGTTTGTGATGATCATTTCATTATAATGAAGTATGGGGCTTGAGCTTCAAATAAGAGAAGGCCTGCCTAGTGCCCAGGTC---ACTGGGAAGAACAAGTCTAAGAGACAAAATAATTATAGATGACCCATTATAGATGCAGAAAGACTTTATTATTCCCCATCCCAAAGCTCCACATATAAGGTTTTAAAAGACATTATCTTCCTTGCATTGTTGGTTGGGCAAGCACAAAGTGGTTTGGTCTTCTGATTAGTTGCTGTAGCAATGGCCATTGTCATTCTTTCTGATGCCTGCTCCATGCCTGGGACTGTGTCCATGGCCATGTGCGGATGCTTGCTCATGGGATGCCTCATGTCTTTTAAACAAGACCTTTCTTATCAGCTCTACAAAT------------TCATCAAAACTCAAGGTAGCATCTTCATTTGTGTCAAAGTCCTCCATCATGTATTTCATTGCTTTCTGATCCTTTTTCTCTTTCTGTAAGAAGAAAATATATAATTGTTAGTGTTGGCCATGGGCACAGAAGTGAACTATTG--CATTATTTGAGTAATCATATGGTAAAT------------------CCAGGGGATCAATTATAAAATTAATAAT------------GATAGACTAAGTGGTCATGGTGGAGTTGATGCTGAGCTTGTGATAAACACTTTCCAATTTGTTCTAGAGAC-----TGCAATCTATATTCGACACTAGGTCTGTAGTTCTTA---AGAAGCTCAGAGAAATGTAAGTGTATCTAGAATGTTCT--TCATTTGTCCCCAGAA--------CAAGTGATAATGAAATCTGCTGTGAAGAGG----ATCTTAGGAGTC-TGGTATTGGCAAAGGTGGATAATCTATTGTATAGGTTGTATTAGTCATACAA---------ATTCAGATCTGGCTTATAAG--AATCTTCACTTCCTTCCA----AATATTGAGGAGG--CATTCC-----ATA-AACAAAGAAGCATATG--------------------ATCTTGAG----AGGATAGAGCATGGTATAGGTTTTGCTGACATCAAAGTTTGTGATAAAGACAGGGATAGGAATGTGAAGTGGGG-TGATCCATATGTAGCA--GAGAGTACCAGCTAGCTGCAAGTCTCCTCCTCACTGCCTGGAATACCTTAGCTAAGGCGTCTCCCATTACCCAATTAGCCCATCTTCATGATCAGTGCTTCCTGTTCTATCACACTGATTTGGCCTGGGATTTGAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGGGAGACTTGCCTAAA-GATCCTTTGCTT--ACCTTCTGTCTTC-----CTGAAAGCAGCTCCTTGTTTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCAATATTTCCCAAGATGGCATTTCTCCACTTTATCTGG------------ACCTCTAGGAAGCCTGGATACCAGCTTACTGGGCTAAATTCAATAATGGA-CTGATAATGGAACTTGTCTTATGTTCTTACTCATTTCTCTCCAGGATTATGTTGGTTGACTTGCATTTGAATTGAGAATAGAAAATCTTTTAAAATGAATACCCC---TACCAAGAACTGACTAGTCATTTCTTGAGCATAGGAAATTCCTAATATTTGGCAGTGCTTTCTCATTGTGAATTT-----TGTACTGGGTCCTCTCCACATGGTCTAAAGCCCTGCATGTTCTTTGGTAGTTTTTCAGGTTTA------CCCTGAGAC------CCTGCTGAGGTTTAATGTCCCTCAGCTTACAATCAAGGATTGTTCTCATGTTTGTTTACTTTTAGAATTGAAGTCTCAGCTTAAATGTCACAATTTCAAAGTAGGAATTGGCTCTAGTCAC--TCACATCTGCTTCACCCAGCACAGA---------TCACCCACAGGACTCTTAACTCATCTTCCTCCGTACTCCCAAGATACCATCTTGTCAGAGTTCTGAATACTGTGTCTCCATCATCAGTTTTGGGCTCTCCTCTACACATGTCTACTCAGTACAGGGCTTCACACAATTCAGATGATTAACTACTGATTATCTGTGACGGAATTCTCATACTTCCCGTGACAGAGCCTTTGCTGCATCTATGTGGAAGATGCAGGAATTTTATCCCTAATTGTTATAGACT----TAAGCCCCCTCTCTCATTAATCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGTCTTTGAATTCCTTCTGGCTCAGGGTGTCTGGGTCTCCCTCCTTCGCAGAATGCTGGTGGAAGATTTTGATTATGTTTTCCATGGCTTGTTCCATCTGTGACTTTTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAATGTACAAG----GAAAGGAAAACTCTGTCAAGCATACT-----GGTTCTTGTCTCTGCCTTCTATCAGGCTAGAAAGGGAGGGGTGGCATACATAATAAAAGAAAAGAC--AGTGTGTCACTTGGTT-GGGAACCATTCTGTCACACATGTGTGAAAGATGCACTTTAGACAATGCAGAGAATGCCAATATAAAAT-----GATTTTATGATTAGAAA--CTTTCAGAA--ATTGAAAGAAGCTGCAACACTGTCAGGGAAAG--GAAGGAGGGAGCCAATAGAATGGTATTGAAAAATGTT
s HiC_scaffold_1 137511509 2785 - 233722169 TGAGTCCAGAAATGAGTTTGTAGGCAGTTACACCCAATTCATCCTTTTTTCTACTGCCTCA-CTCCACTTTTCCTCCTCAGACATGGCACTGCTTGGGTCCATTGCTGGAAGACCTCCACAGGAATAGGGTTCTATTAGGAGA-------GACACAA-TCAGTGA---TGACTGGGTTTGAGTGGGGAGGTGGCCAGTCAGCATACTGAGGGGCACAGACAACCcactttgttttcttcagtgtcaAAGGCCATGTTGAAATGCTATGCAGCATGACTGGCATCTAAACAGTGGGatctgatgtcagaaaat-atatgGCCATGGAGGTGGGCCCAAGGGGCTCAGAACAGACCCACATGTTGTTGGCTCTCATTTTGTTATGATCAAGTTCAGGGGTTGAGCTACAGACAAGGGTAGGACTGTGTAGGGCTGGAATCCTGACTGGCAAGAA-------GACAGACAAAACA--TACAGA----ACATTG-GCATACAGAAAGACTTTATT--TCCCCCACGCCCAGCCCCACATTCAAGATGATATAGCACAT-ATTTTCTATGAACA--TGGTTGGGCAGGTGCAGAGTGGCCTGGCCTCCTAATTAAT------GGCAATGGCCTTTCACACCCTCTCCAAGGCCTGGCCCATGGCTGTG-----GTCCGGAGCACGGTG-GTGTCCCTCCTCATGCATCTTCTCATGG---------GAGGCATTG---ATCAGCCTGGCAAACAGCATGATGACCTCCTCAAAGCTCAACTGCTGGTCCTGGTTTGTGTCCAGGTCCTGCATGATgtcatttatttcatcttcttttctATTCTCACACTGTGGGTGGAGAAAATACAGCGATTAGGCTTGGATGTGGCCAGGGATAGAGATTAGGGAGCACAATCTATGT--CCGGATGGCAAATGCACAGGGAAGCCTGGGCCCTGTAGatccatttaaaaattcaaaatttaaaatttaaaagtgaccTGAGTACCCAGGATGGAGCCAA-----AATCCATGCTAATCATGTGCCAGCTTATTCCCCAGACACTCCTACAACTCAGGTAGGG---TGAGCCTCTTCATTTTATGGAGAAGGTCCTACAATT---AGTAAGTCTGAAATGTCCTCATATCTAGTCCTCATAATAACTTAACAAGCAGAAGTGGTATCTTCTTTGAGGAAACCACATTTTAGGATTGGTGGTTTTTGCAA-GCTGAGGAGGCTAGGAAGCAGATCTGACTTAGAGTGCAGTCCTGCCCCATTCCCTCCTCTCTTCTCAGTTACTCCCTGCTCCTCTCCATTGGAGGATTGGTAAAGTTCATTCTTACCTATATAGTAGAGAAGGACCTAGGAGAACCAGACAATGCAATATCTTGAGTGAGGGGagagagcaaaataaatgctT-GCTGCCCCCAAAGTATTTGA-------AGGAA----GATGTCAGGTGGGGAGGATTTAGATGGGGCAAAGAGAGCACCAGGTGGCCACAGCTCTGCTGCCTACTGGCTGTGTCACCTCAGCTATGCCCAGTTCCAGAGCCTAAGTGGCCCGTCCAAATG-------------------TGGCAGGGAT---GTCAGGGAG--GGGAAATTTGAGCACAT----GGGGACTTCACAGag--tgaaacctttcccacatggTCTTCTAGCTGCACCTTCTCTATCCTGACCCTGAAGGC---TTCATG----CCTGAGACCACCACTTGTGGGAAGCTGTTAATCTCCCTAACACCTCCCA-TAGGACAGTTCTCCATCTTAccaaggaaagggaagaaagggctAGGGA-CTTG--TCCCAGGTCA----GCTGGACCCAGGAATGGAATTGACA-----------CCCATGTGTCCCTTCCTTCTTAGTCTAGACC---TCTGCTTCCTCGAACCTGAAAAGA-------------CTTGGGAGGGATCTCCCACTGCCCTAGAACTGCCTAGTCATTTTCAGATTGGAGGACAACACTAATGTTTTGC--TACATCCT--TTGTACATTCCAGGCTGTGCTGGGTGCTTTCTacttcttcttcatttctctgttttcctctggAGACCCTAAGGATGAGAAAAGCCCTACCACATGTTCCCTACTAAGGCTTAGAATCCTTCAACCTCCTGCCAA----TGTCCTC---------CAC-----------AGGGCTGAACTCAAATGTC-CACTCTCCAGG-AGGCCTTTCCACTATCCAGAGTCATCTCTGCCCCACCTGGCCCAGGAATCTTCTTTTTCCCCTAGGGCACTTA------CTGACGTTGGATTAACTGTATTTTATCTTGCC-TAATTCAGGATATCAGGTTCCC-----------TGTTCACTCCCCTCC---TGTATGCCAA--ACAGGGCCTGACACA---------------------------------------------TACCC----CAGA--------TGCCTCTGGATGGAAGGAACTAGAATTCT---CTTGTCTGCTGTAGACTGCCCCATGTTTCATCTCACCTTAGTCAAGCCCTACCTTGAGGAAGTTTGCCAGCTCCGTTTCCGTGAGTTTTTTGAATTCGTTCTTGTTTAAGGTGTCTGGGTGTCCGGACAGCCTAGAGTACTTGTGAAAAGTGTTGATAATGGTTTCTAAGCTGCGTTCCAGCTGCGACTTATTGGCTGCCATCTTCTTGCACTCtgtataaataagaaagaaacaaaggtatGGGTGCTTAGAAGAAAAGGCCACCATGCTTCCTTGAAAGGTCCT----CCAGCC-----ACaggcaggaagaagaggag----atataaaattaaacaagaagcATAGGATGCCTCTTACTCAGGGAAACAGTTTCTCATGCACATGTGAGAAATGAATTTTG------ACagagaatgttaaaaaaaaatcaaagcagttgAGGGCAGGAAAAGCTCTAAGAATGTGTGAAGGAAGCTATGACATGAACAGGATCAGCCAAAGGGGTATTCTAGTAGGAGGATTTGGAAGAAAGTT

a score=21455
s chr3            90845792 2729 + 160039680 TGGATTCAGAAATGAATTAGTA--CAG-------------ATCATTGTCCACACTGCTAGAGTTCCAGTATTACTTCCCTGACATGACA-------------TGACAGAAAAACTTTTGGTTGAATAGAGTTCTGTAAAAGACTTTGTGGGCAGAGCTTAGTGAAGATGATCAGGGCCAACTTTGGAAATGGCTGGT----ATGTTGAGGGG---AGACCAGCTGCTTT--TTCCTTCA---------------TTAATAGGCTAATCATGTGAACTTCTGCTAAAAAAGTAGGGTATA--GTTAGA-----TGGGGACTTGGTGACAGGTATACACTGGGAAATCAGCATAGAT--AAAAGTTGGTTGTGATCATCTCATTATGATGAAGTGTGGGGCTTGAATTTCCAATAAGAGGAGGCCTGCCTAGTGCCCAGGCC---ACTGGGAAGGACAAGTCTAAGAGACAAAATCATCATAGATGACCCTGGCATGCAGAAAGACTTTATTATTCCCCATCTCAAAGCTCCACACATAAGGTTTTAAAAGAATTATCTTCCTTGCATCATTGGTTGGGCAAGCACAAAGTGGTTTGGTCTTCTGATTAGTTGCTGTGGCAATGGCCATTGTCATCCTATCTGATGCCTGCCCCATGCCTG------GGACTGTTTCCATGGCCATGTGCAGATGCTTGCTCATGGGATGCCTCATGTCTTCCAGTCAAGACTTTGCTCACCAGGTCGAGAAATTAATCAAGGCTCATTTTACCATCTCCATTTGTGTCAAGATCATCCATCATGTATTTAATTGCTTTCTGATCCCTTTTCTCTTTCTGTAAGTAGAAAATATGTAATTGTTAGTGTTGGCCATGGGTACAGAGGAGAACTATGGAGTCATGTGAGTGATCATATGGTAAAT------------------CCAGGGGATCAATTTAAAA-TTAATAATGATAGACTAAGAGGTCATGGTGGCATTGATGCTG-------AGCTTGTGCTAAACACTTTCCAATTTGTTCTAGAGAC-----TGCAATCTTTATTAGACACTAGGTCTGTAGTTCTTA---AGAAGTTCAGAGATATGTGAGTATATCTAGAAATGTTCT--TCATTGGTCCCCAGAA--------CACGTGATAATGAAATCTACTGTGAAGAGG----ATCTTAGGAGTCTGGTATTGGGAAAGGTGGATAACCTATTGTATAGGTTGTATAAGTCATACAAATTCAGACCTGGCTTAT------------------------------------------------AGGAATCTTCACCTCCCTCCAAATAGT-GAGGAGGCATTCTGAAAACTAGGAAGCACATGATCTTGAG--AAGGTACAGAATGGTATATGT-TTTGCTATCCTCAAAGTATGTGATAAAGACAGGGATAAGAATGTGAAGTGGAG-TGATCCATATGTAGCA--GAGAGTACCAGTTAGCTGCAAGTCTCCTCCTCACTGTCTGGAT-ACCTTGGCTAAAGACCCGCCCATTACCCAATTAGCCCATCTTCATGATCAGTGCTTCCTGTCTGTCACACTAATTTGGCCTAGGATTT-------GAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGGGAGTTGCCTAAAGAGCTTTTG---TTTACCTTCTGTCTTC-----CTGAAAGCAGCTCCTTGTTTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCAATATTTCCCAAGATGGCGTTTCTCTACTTTATCT-GGACCTCTAGGAA--GCCTGGATACCAGCCTAATGGGGTGAGTATAATAATGGTCTGACAGTGAGACTTGTTTTATGTGTCTTACTAATTTCCTTCCAGGATTCTGTTGGTTGGCTTACATTTGAATAGAGAATAGAAAACCTTTTAAAATGAATCCCT---TTACCAAGAACTGACTGGTCATTTCTTGAGCAGAGGAAATCCCGAATAATTGAC--AGTGCTTTCTCCATGTGAAATTTGTACTAGGTTCTCTCCACATAGTCCAGAGATCTGAATGTTCTATGGTAGGTTTTCAGGTTCA------CCCTGAGAC------CCTGCTGAGTCTTAAATTCCCTCAGCTTCAAATCAAGTATTATCCTCATGTTTGTTTACTTTCAGAATTGAAGTCTCAGCTTAAAAGTCACAATTTCAAAGTAGGAATTGGCTCTAGTCC-ACTCACATCTGCTTCACTCAGCACAGATCACCCACAGGACTCTAACGCATCTTCCTCTGTACTCCCAAGATACCGAGTT-CTCTGAGTT--CTGAATACTGTGTCTCC--ATCAATAATATTGTCAGTTTCAGGTTCAGCTCTACAACTGACTGCTCAGAACAGGGCTT--CACATAATACAGATGATTAATTACTGATTATCAGTGACTGAATTCTCACACCTCCAGTGACAGAGCCTTTGCTGCATCTATGTGGAAGATGCAGGAATTTTATCCCTAATTGCTGTAGACTG----AAGCCCCCTCTCTCACTAACCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGTCTTTGAATTCCTTCTGGCTCAGGGTGTCTGGGTCTCCCTCTTTTCCAGTGTGCTGGTGAAAGATTTTGATTATATTTCTTTATGGCTTGTTCCATCTGTGACTTTTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAATGTACAAG----GAAAGGAAAAGTCTGTCAAGCGTACTGGTTCTTGTCTCTTCCCTCTATCAGGGTAGTAAGGGGGCATACACAATAAAAGA--AAGGACAGGGAGTCACTTGGT-GGGGAACCATTGTGTCACACATGTGTGTGATAAGAAACTTT-CAGAAATTG----AAAGAGGCTACAACACTGTCAGGGCAAGGCAGG
s HiC_scaffold_1 137511509 2703 - 233722169 TGAGTCCAGAAATGAGTTTGTAGGCAGTTACACCCAATTCATCCTTTTTTCTACTGCCTCA-CTCCACTTTTCCTCCTCAGACATGGCACTGCTTGGGTCCATTGCTGGAAGACCTCCACAGGAATAGGGTTCTATTA----------GGAGAGACACAATCAGTGATGACTGGGTTTGAGTGGGGAGGTGGCCAGTCAGCATACTGAGGGGCACAGACAACCcactttgttttcttcagtgtcaAAGGCCATGTTGAAATGCTATGCAGCATGACTGGCATCTAAACAGTGGGatctgatgtcagaaaatatatgGCCATGG----AGGTGGGCCCAAGGGGCTCAGAACAGACCCACATGTTGTTGGCTCTCATTTTGTTATGATCAAGTTCAGGGGTTGAGCTACAGACAAGGGTAGGACTGTGTAGGGCTGGAATCCTGACTGGCAAGAA-------GACAGACAAAA----CATACAGAACATTGGCATACAGAAAGACTTTATT--TCCCCCACGCCCAGCCCCACATTCAAGATGATATAGCACATATTTTCTATGAACA--TGGTTGGGCAGGTGCAGAGTGGCCTGGCCTCCTAATTAAT------GGCAATGGCCTTTCACACCCTCTCCAAGGCCTGGCCCATGGCTGTGGTCCGGAGCACGGTGGTGTCCCTCCTCATGCATCTTCTCATGGGAGGCATTG-ATCAGCCTGGCAAA-----------CAGCATGATGACCTCCTCAAAGCTCAACTGCTGGTCCTGGTTTGTGTCCAGGTCCTGCATGATgtcatttatttcatcttcttttctATTCTCACACTGTGGGTGGAGAAAATACAGCGATTAGGCTTGGATGTGGCCAGGGATAGAGATTAGGGAGCACAATCTATGTCCGGATGGCAAATGCACAGGGAAGCCTGGGCCCTGTAGatccatttaaaaattcaaaatttaaaatttaaaagtgaccTGAGTACCCAGGATGGAGCCAAAATCCATGCTAATCATGTGCCAGCTTATTCCCCAGACACTCCTACAACTCAGGTAGGG---TGAGCCTCTTCATTTTATGGAGAAGGTCCTACA---ATTAGTAAGTCT-GAAATGTCCTCATATCTAGTCCTCATAATAACTTAACAAGCAGAAGTGGTATCTTCTTTGAGGAAACCACATTTTAGGATTGGTGGTTTTTGCAAGCTGAGGAGGCTAGGAAGCAGATC---TGACTTA---GAGTGCAGTCCTGCCCCATTCCCTCCTCTCTTCTCAGTTACTCCCTGCTCCTCTCCATTGGAGGATTGGTAAAGTTCATTCTTACCTATATAGTAGAGAAGGACCTAGGAGAACCAGACAATGCAATATCTTGAGTGAGGGGagagagcaaaataaatgctTGCTGCCCCCAAAGTATTTGA-----------AGGAAGATGTCAGGTGGGGAGGATTTAGATGGGGCAAAGAGAGCACCAGGTGGCCACAGCTCTGCTGCCTACTGGCTGTGTCACCTCAGCTATGCCCAGTTCCAGAGCCTAAGTGGCCCGTC-----------------------------CAAATGTGGCA-GGGATGTCAGGGAGGGGAAATTTGAGCACAT----GGGGACTTCACAGagtgaaacctttcccacatggTCTTCTAGCTGCACCTTCTCTATCCTGACCCTGAAGGC---TTCATG----CCTGAGACCACCACTTGTGGGAAGCTGTTAATCTCCCTAACACCTCCCA-TAGGACAGTTCTCCATCTTAccaaggaaagggaagaaagggctAGGGACTTGTCCCA---GGTCAGCTGGACCCAGGAATGGAATTGACACCC-----ATGTGTCCCTTCCTTCTTAGTCTAGACCTCTGCTTC----CTCGAACCTGAAAAGA-------------CTTGGGAGGGATCTCCCACTGCCCTAGAACTGCCTAGTCATTTTCAGATTGGAGGACAACACTAATGTTTTGCTACATCCTTTGTACAT-TCCAGGCTGTGCTGGGTGCTTTCTacttcttcttcatttctctgttttcctctggAGACCCTAAGGATGAGAAAAGCCCTACCACATGTTCCCTACTAAGGCTTAGAATCCTTCAACCTCCTGCCAA----TGTCCTC-------------CACAGGGCTGAA-------CTCAAATGTC-CACTCTCCAGG-AGGCCTTTCCACTATCCAGAGTCATCTCTGCCCCACCTGGCCCAG--------------------GAATCTTCTTTTT--CCCCTAGGGCACTTACTGACGTTGGATTAACTGTATTTTATCTTGCCTAATTCAGGATATCA--GGTTCCCTGTTCA-CTCCCCTCCTGTATGCC--AAACAGGGCCTGACACATACCCCAGATG-----------------------------------------------------------CCTCTGGATGGAAGGAACTAGAATTCT---CTTGTCTGCTGTAGACTGCCCCATGTTTCATCTCACCTTAGTCAAGCCCTACCTTGAGGAAGTTTGCCAGCTCCGTTTCCGTGAGTTTTTTGAATTCGTTCTTGTTTAAGGTGTCTGGGTGTCCGGACAGCCTAGAGTACTTGTGAAAAGTGTTGATAATGGTT-TCTAAGCTGCGTTCCAGCTGCGACTTATTGGCTGCCATCTTCTTGCACTCtgtataaataagaaagaaacaaaggtatGGGTGCTTAGAAGAAAAGGCCACCATGCTTCCTTGAAAGGTCCTCCAGCCACaggcagg--aagaagaggagatataaaattaaacaagaagcATAGGATGCCTCTTACTCAGGGAAACAGTTTCTCATGCACATGTGAGAAATGAATTTTGACagagaatgttaaaaaaaaatcaaagcagt-tgAGGGCAGGAAAAG

a score=20080
s chr3            90887724 1553 + 160039680 CACATGCTCTTT--ACTACTACTTGTCT-------TCCTGGAAGCATAATTTGTTTGCCTGGGATCCTTACTTATGGTGAGGTCTATATGTCCCTTGTATCTCCCACAGTGGCATTTTTCTATTTTTACAGGACCTCTAAGAGGGCTGAAGATCCACTTACTGG----------ACTGGCCCTACTAATGGACTGACACTAGAACCCATGTCAAGTGTCTTTTCCATTTCCTTCCAGGTTTGTACTTCTATGCATTTGAAAAGTGAAACACATGCTTTTGGAATGAATCTCT---TTAGCTAGAATTTACTTTTCACTTCTTGAAGGGAGGGTATTCCTGGCATTTG---ACAGTGATTCTCCATGTGAGGTCTGTGCAGTTGGTTCTCCACATGCTGTTGATTTCTGAATTTTCTACACTAGGCCCTCAAA-----------TCTACTGTAAGTCCCTAGCTGAGTCTTAGTGTCTTTCATTGTCTTGTTAAGAGCTCTTCTCAAGTGTGTTCATTACCAGGGATGAAGTCTCAACTCAAATGTCCCACCTCAAAATGAGTGTTCCCTCTAGTCC-ATTCATCTCTACTGCACCAAGCACAAACCACACACAGGACTCTATCTCATCTTCCTTGATACTCCCAGGAATTTGGGTTTGTCTGTGTTCCTAATGTTGTGTGTCCATCACCTGGATTTGTCAGTTGCAGATTCACCACTACATGTGTCTTCCC------AGAACATGATATTACACAGATATTCAACTCCTGACTG----ACAGTGTCTAACCTAGCATACCACCAGTCACTGTGCCCTTGCTCTGTCTCTATGGAAGGTTCTAGAATTTTATCCCTAACTGTGGCAGACTGGAC----TCTCTTCCCAAAGTAATCAGTCCTTACCTTGAAAGAGTTTGGCATCTCCTTATTCACAAGCTCTTTGAATTCCTTCTTGCTCAGGGTGTCAGGATTTCCCTCCGTTAGAGAGTACTTGTGGAAGATCTGGATGATGACGTCCATGGATTCTTCCATCTGTGACTTTTAAGGCTGCTCTTTTTTTCTTTCTTCACTCTG----AATCCTGGAGAAGCAAATGTGTAG-----TAAAGGAATGTTCTGTCAAGCATACCTGTTCTTGTCTATGGCCTCTAT---CAGACTAGAAAGGGAGGGGACAATCACAATAAAA----AAGGACAGGGTGTCACTTAGTC-TGGAACCATCCTGTCATGTATCTATAAGAGATTAAGTTT---AGACAATGT--AAAGAATACTAAAGCATTACTATTTTATAGTAAGAAGTCTTCAAGAAGT---TGAAGGAAGCTACAAAGCTGCCAGAATCAGGAAGAAGGG---ACGAGAAGAAGGGTTTGGGGAAAAGTCACACAGATGAGGGTAAGAAAGCAGTGGAAGGCAGGATCCTAAGAAATAAAGCTGCA--CTCACTCACTGAAGCTTGGGAGCAACACAGTGTTTGGCATAATAGAGCAGGCCCAGCATTTAAAGGCAGCTCATGACTGACACATATTTCCCTGATCCCAGGAATGAATGCATCACAGATGAACAATATGGCATCCCTG-CATGAATGTGGAGAATTGTGGCAGGACAGGAGGTGTTCACATA
s HiC_scaffold_1 137513071 1451 - 233722169 cacatggTCTTCTAGCTGCACCTTCTCTATCCTGACCCTGAAGGCTTCAT------GCCTGAGACCACCACTTGTGGGAAGCTGTTAATCTCCCTAACACCTCCCATAG-GACAGTTCTCCATCTTAccaagg-----aaagggaagaaagggctAGGGACTTGTCCCAGGTCAGCTGGACCCAGGAATGGA-----ATTGACACCCATGT-----GTCCCTTCCTTCTTAGTCTAGACCTCTGCTTCCTCGAACCTGAAAAGA------------CTTGGGAGGGATCTCCCACTGCCCTAGAACTGCCTAGTCATTTTCAGATTGGAGGACAACACTAATGTTTTGCTACATCCTTTGTACATTCCAGG-CTGTGCTGGGTGCTTTCTacttcttcttcatttctctgttttcctctggAGACCCTAAGGATGAGAAAAGCCCTACCACATGTTCCCTACTAAGGCTTAGAATCCTTCAACCTCCTGCCAA----------------TGTCCTCCACAGGG--------CTGAACTCAAATGTCCACTCTCCAGGAG-GCCTTTCCACTATCCAGAGTCATCTCTGCCCCACCTGGCCCA-----------GGA---------ATCTTCTTT--TTCCCCTAGGGCACT--------------TACTGACGTTGG------ATTAACTGTATTT--------------------------TATCTTGCCTAATTCAGGATATCAGGTTCCCTGTTCACTCCCCTCCTGTATGCCAAACAGGGCCTGAC---ACATACC-CCAG-----ATGCC---------TCTGGATGGAAGGAACTAGAATTCT---CTTGTCTGCTGTAGACTGCCCCATGTTTCATCTCACCTTAGTCAAGCCCTACCTTGAGGAAGTTTGCCAGCTCCGTTTCCGTGAGTTTTTTGAATTCGTTCTTGTTTAAGGTGTCTGGGTGTCCGGACAGCCTAGAGTACTTGTGAAAAGTGTTGATAATGGTTTCTAAGCTGCGTTCCAGCTGCGACTTAT-TGGCTGCCA------TCTTCTTGCACTCtgtataaataagaaagaaacaaaggtatGGGTGCTTAGAAGAAAAGGCCACCATGC-------TTCCTTGAAAGGTCCTCCAGCCACaggcaggaagaagaggagata--taaaattaaacaagaagcATAGGATGCCTCTTACTCAGGGAAACAGTTTCTCATGCACATGTGAGAAATGAATTTTGACagagaatgttaaaaaaaaatcaaagc------agttgAGGGCAGGAAAAGCTCTAAGAATGTGTGAAGGAAGCTATGACATGAACAGGATCAGCCAAAGGGGTATTCTAGTAGGAGGATTTGGAAGAAAGT----TTGGAGCAGAAAAGAAAGACCTGGCA-GCAGGTTCCTGCCTGGGAAAGTGGGAAGCTCACTCACCAGAGCGAAGGAG--ACACTGCACCTGACACACCTGGGCTGCCCCAGCATTTATAGGCAGCCTTTGGCAGGAACATATGGCCTT--CTCGGGGGAAGATTGCCTCACAGGAGAGCCATGTGGCAACCTTGCCAGGGAGGCGGGTAA----AGCAGGGCAGGAAATGTTCACATA

a score=24691
s chr3            90914446 2810 + 160039680 TGGATTCAGAAATGAATTAGTACAGAG---------------CATTGTCCACACTGCTAGAGTTCCAATATTATTTCCCTGACATGATA-------------TGACAGAAAAACTTTTGGTTGAATAGAATTCTGTTAAAAGACTTTGTTGGCAGAGCTTAGTGAAGATGATCAGGGCCAAGTTTGGAAATGGCTGG----CATGTTGATGGG---AGATCAACTGCTTT--TCCCTTCA---------------TTAATAGGTTAGTCATGTGAACTTCCACTCAAAAAGTAGGGTATA--GTTAGATGGCGATATGGTGACAGATTTACACTGGAAAATCATAG--------CAAAAGTTTGTGATGATCATTTCATTATAATGAAGTATGGGGCTTGAGCTTCAAATAAGAGAAGGCCTGCCTAGTGCCCAGGTC---ACTGGGAAGAACAAGTCTAAGAGACAAAATAATTATAGATGACCCATTATAGATGCAGAAAGACTTTATTATTCCCCATCCCAAAGCTCCACATATAAGGTTTTAAAAGACATTATCTTCCTTGCATTGTTGGTTGGGCAAGCACAAAGTGGTTTGGTCTTCTGATTAGTTGCTGTAGCAATGGCCATTGTCATTCTTTCTGATGCCTGCTCCATGCCTGGGACTGTGTCCATGGCCATGTGCGGATGCTTGCTCATGGGATGCCTCATGTCTTTTAAACAAGACCTTTCTTATCAGCTCTACAAAT------------TCATCAAAACTCAAGGTAGCATCTTCATTTGTGTCAAAGTCCTCCATCATGTATTTCATTGCTTTCTGATCCTTTTTCTCTTTCTGTAAGAAGAAAATATATAATTGTTAGTGTTGGCCATGGGCACAGAAGTGAACTATTG--CATTATTTGAGTAATCATATGGTAAAT------------------CCAGGGGATCAATTATAAAATTAATAAT------------GATAGACTAAGTGGTCATGGTGGAGTTGATGCTGAGCTTGTGATAAACACTTTCCAATTTGTTCTAGAGAC-----TGCAATCTATATTCGACACTAGGTCTGTAGTTCTTA---AGAAGCTCAGAGAAATGTAAGTGTATCTAGAATGTTCT--TCATTTGTCCCCAGAA--------CAAGTGATAATGAAATCTGCTGTGAAGAGG----ATCTTAGGAGTC-TGGTATTGGCAAAGGTGGATAATCTATTGTATAGGTTTTATTAGTCATACAA---------ATTCAGATCTGGCTTATAAG--AATCTTCACTTCCTTCCA----AATATTGAGGAGG--CATTCC-----ATA-AACAAAGAAGCATATG--------------------ATCTTGAG----AGGATAGAGCATGGTATAGGTTTTGCTGACATCAAAGTTTGTGATAAAGACAGGGATAGGAATGTGAAGTGGGG-TGATCCATATGTAGCA--GAGAGTACCAGCTAGCTGCAAGTCTCCTCCTCACTGCCTGGAATACCTTAGCTAAGGCGTCTCCCATTACCCAATTAGCCCATCTTCATGATCAGTGCTTCCTGTTCTATCACACTGATTTGGCCTGGGATTTGAGAAATCTGATCAAATTAATGGATTGTTCACAGAGAGGGGAGACTCGCCTAAAGAGCCTT-----TGCTTACCTTCTGTCTT---CCTGAAAGCAGCTCCTTGTTTTCCTGAGATCCTTATGTATGGGGAGCTCTCTGTGTCTCCAATATTTCCCAAGATGGCATTTCTCCACTTTATCTGG------------ACCTCTAGGAAGCCTGGATACCAGCTTACTGGGCTAAATTCAATAATGGA-CTGATAATGGAACTTGTCTTATGTTCTTACTCATTTCTCTCCAGGATTATGTTGGTTGACTTGCATTTGAATTGAGAATAGAAAATCTTTTAAAATGAATACCCC---TACCAAGAACTGACTAGTCATTTCTTGAGCATAGGAAATTCCTAATATTTGGCAGTGCTTTCTCATTGTGAATTT-----TGTACTGGGTCCTCTCCACATGGTCTAAAGCCCTGCATGTTCTTTGGTAGTTTTTCAGGTTTA------CCCTGAGAC------CCTGCTGAGGTTTAATGTCCCTCAGCTTACAATCAAGGATTGTTCTCATGTTTGTTTACTTTTAGAATTGAAGTCTCAGCTTAAATGTCACAATTTCAAAGTAGGAATTGGCTCTAGTCAC--TCACATCTGCTTCACCCAGCACAGA---------TCACCCACAGGGCTCTTAACTCATCTTCCTCCGTACTCCCAAGATACCATCTTGTCAGAGTTCTGAATACTGTGTCTCCATCATCAGTTTTGGGCTCTCCTCTACACATGTCTACTCAGAACAGGGCTTCACACAATTCAGATGATTAACTACTGATTATCTGTGACGGAATTCTCATACTTCCCGTGACAGAGCCTTTGCTGCATCTATGTGGAAGATGCAGGAATTTTATCCCTAATTGTTATAGACT----TAAGCCCCCTCTCTCATTAATCAAGTATTACCTTGAAGGAATTTGGCATATCATCATTCACCAGGTCTTTGAATTCCTTCTGGCTCAGGGTGTCTGGGTCTTCCTCCTTCGCAGAATGCTGGTGGAAGATTTTGATTATGTTTTCCATGGCTTGTTCCATCTGTGACCTTTAAGGCAGTTTATTTTTTCACTCTATTTGAATCCTTGAGAATCAAATGTACAAG----GAAAGGAAAACTCTGTCAAGCATACT-----GGTTCTTGTCTCTGCCTTCTATCAGGCTAGAAAGGGAGGGGTGGCATACATAATAAAAGAAAAGAC--AGTGTGTCACTTGGTT-GGGAACCATTCTGTCACACATGTGTGAAAGATGCACTTTAGACAATGCAGAGAATGCCAATATAAAAT-----GATTTTATGATTAGAAA--CTTTCAGAA--ATTGAAAGAAGCTGCAACACTGTCAGGGCAAG--GAAGGAGGGAGCCAATAGAATGGTATTGAAAAATGTT
s HiC_scaffold_1 137511509 2785 - 233722169 TGAGTCCAGAAATGAGTTTGTAGGCAGTTACACCCAATTCATCCTTTTTTCTACTGCCTCA-CTCCACTTTTCCTCCTCAGACATGGCACTGCTTGGGTCCATTGCTGGAAGACCTCCACAGGAATAGGGTTCTATTAGGAGA-------GACACAA-TCAGTGA---TGACTGGGTTTGAGTGGGGAGGTGGCCAGTCAGCATACTGAGGGGCACAGACAACCcactttgttttcttcagtgtcaAAGGCCATGTTGAAATGCTATGCAGCATGACTGGCATCTAAACAGTGGGatctgatgtcagaaaat-atatgGCCATGGAGGTGGGCCCAAGGGGCTCAGAACAGACCCACATGTTGTTGGCTCTCATTTTGTTATGATCAAGTTCAGGGGTTGAGCTACAGACAAGGGTAGGACTGTGTAGGGCTGGAATCCTGACTGGCAAGAA-------GACAGACAAAACA--TACAGA----ACATTG-GCATACAGAAAGACTTTATT--TCCCCCACGCCCAGCCCCACATTCAAGATGATATAGCACAT-ATTTTCTATGAACA--TGGTTGGGCAGGTGCAGAGTGGCCTGGCCTCCTAATTAAT------GGCAATGGCCTTTCACACCCTCTCCAAGGCCTGGCCCATGGCTGTG-----GTCCGGAGCACGGTG-GTGTCCCTCCTCATGCATCTTCTCATGG---------GAGGCATTG---ATCAGCCTGGCAAACAGCATGATGACCTCCTCAAAGCTCAACTGCTGGTCCTGGTTTGTGTCCAGGTCCTGCATGATgtcatttatttcatcttcttttctATTCTCACACTGTGGGTGGAGAAAATACAGCGATTAGGCTTGGATGTGGCCAGGGATAGAGATTAGGGAGCACAATCTATGT--CCGGATGGCAAATGCACAGGGAAGCCTGGGCCCTGTAGatccatttaaaaattcaaaatttaaaatttaaaagtgaccTGAGTACCCAGGATGGAGCCAA-----AATCCATGCTAATCATGTGCCAGCTTATTCCCCAGACACTCCTACAACTCAGGTAGGG---TGAGCCTCTTCATTTTATGGAGAAGGTCCTACAATT---AGTAAGTCTGAAATGTCCTCATATCTAGTCCTCATAATAACTTAACAAGCAGAAGTGGTATCTTCTTTGAGGAAACCACATTTTAGGATTGGTGGTTTTTGCAA-GCTGAGGAGGCTAGGAAGCAGATCTGACTTAGAGTGCAGTCCTGCCCCATTCCCTCCTCTCTTCTCAGTTACTCCCTGCTCCTCTCCATTGGAGGATTGGTAAAGTTCATTCTTACCTATATAGTAGAGAAGGACCTAGGAGAACCAGACAATGCAATATCTTGAGTGAGGGGagagagcaaaataaatgctT-GCTGCCCCCAAAGTATTTGA-------AGGAA----GATGTCAGGTGGGGAGGATTTAGATGGGGCAAAGAGAGCACCAGGTGGCCACAGCTCTGCTGCCTACTGGCTGTGTCACCTCAGCTATGCCCAGTTCCAGAGCCTAAGTGGCCCGTCCAAATG-------------------TGGCAGGGAT---GTCAGGGAG--GGGAAATTTGAGCACAT----GGGGACTTCACAGag--tgaaacctttcccacatggTCTTCTAGCTGCACCTTCTCTATCCTGACCCTGAAGGC---TTCATG----CCTGAGACCACCACTTGTGGGAAGCTGTTAATCTCCCTAACACCTCCCA-TAGGACAGTTCTCCATCTTAccaaggaaagggaagaaagggctAGGGA-CTTG--TCCCAGGTCA----GCTGGACCCAGGAATGGAATTGACA-----------CCCATGTGTCCCTTCCTTCTTAGTCTAGACC---TCTGCTTCCTCGAACCTGAAAAGA-------------CTTGGGAGGGATCTCCCACTGCCCTAGAACTGCCTAGTCATTTTCAGATTGGAGGACAACACTAATGTTTTGC--TACATCCT--TTGTACATTCCAGGCTGTGCTGGGTGCTTTCTacttcttcttcatttctctgttttcctctggAGACCCTAAGGATGAGAAAAGCCCTACCACATGTTCCCTACTAAGGCTTAGAATCCTTCAACCTCCTGCCAA----TGTCCTC---------CAC-----------AGGGCTGAACTCAAATGTC-CACTCTCCAGG-AGGCCTTTCCACTATCCAGAGTCATCTCTGCCCCACCTGGCCCAGGAATCTTCTTTTTCCCCTAGGGCACTTA------CTGACGTTGGATTAACTGTATTTTATCTTGCC-TAATTCAGGATATCAGGTTCCC-----------TGTTCACTCCCCTCC-----TGTATGCCAAACAGGGCCTGACACA---------------------------------------------TACCC----CAGA--------TGCCTCTGGATGGAAGGAACTAGAATTCT---CTTGTCTGCTGTAGACTGCCCCATGTTTCATCTCACCTTAGTCAAGCCCTACCTTGAGGAAGTTTGCCAGCTCCGTTTCCGTGAGTTTTTTGAATTCGTTCTTGTTTAAGGTGTCTGGGTGTCCGGACAGCCTAGAGTACTTGTGAAAAGTGTTGATAATGGTTTCTAAGCTGCGTTCCAGCTGCGACTTATTGGCTGCCATCTTCTTGCACTCtgtataaataagaaagaaacaaaggtatGGGTGCTTAGAAGAAAAGGCCACCATGCTTCCTTGAAAGGTCCT----CCAGCC-----ACaggcaggaagaagaggag----atataaaattaaacaagaagcATAGGATGCCTCTTACTCAGGGAAACAGTTTCTCATGCACATGTGAGAAATGAATTTTG------ACagagaatgttaaaaaaaaatcaaagcagttgAGGGCAGGAAAAGCTCTAAGAATGTGTGAAGGAAGCTATGACATGAACAGGATCAGCCAAAGGGGTATTCTAGTAGGAGGATTTGGAAGAAAGTT

a score=8773
s chr3           91039572 416 + 160039680 tgCATCTACTTTGTCCTCATTCTGCATGACCAAGAGGTGAAGGTCATGAAAGATGAAATCAATGCCCTCATTAAAGATGCTGATTTCAATGTTGAATCTTTCTGGCCTGGTTTGTTTCCAAAGGCCCTGGCCAATATCAAGATTGAGAGGTTCATCTGTCACTTAGGGGCTGGTGCACCTGGTTCAGCAGCTGGAGCCATGCCTGCTGGTAGTCCTGACTCATCCACCACTAATGTTCCAGTTGAGGAAAGGAAAGTAGAAGCAAAGA-ATGAAGAACCTAAGGAATCAGTTGATGACATAGGAtgtcttagttagggttgtattgctgtgaacagacaccatcaccaaggtaactctaataagaacaacattttattttgactggcttacaggttcagggg-ttcaatccattatca
s HiC_scaffold_1 29350171 396 - 233722169 TGCTTCTACTTTGGTCTCACCCTGAATAACAAATAGCTGAGCATCACAGAAGAAGAGATCAATAGCCTGATTATAGCACCTGGTGTTAATTTTGCACCTCTCTAA-CTGACTT-TTTGCAATGACCCCAATCAAGTTCAACCTTGGGTGTCTCGCCTGTGATGTCAGAGCTGATGGACCTGCTCTAGCAATGGACACCACACCAACAGGAGGTCCCG-CTCTTCCACTACTTCTA-TCcagacacagagaagaaaatggaaggaaaaatatg-------TGACAAGTCTGTTGATGGCAT---GTGTGTTACTCAGCTTTCCGTCACTGTGGCAACATA-TGTGAGGAAATCAACTTTGAGGAGGAAGG---GTTaatttga----tttctagtttcagagatttcaatccatGGTCA

a score=35319
s chr3            92012288 2695 + 160039680 GGAAGGTCCAGTTTGGCAGGTCTTATTGAGTGATG-CTATTGAATAGACATTC-TAAAGGATGTGGCAATGCAGGTCTTCCCCAGTGAGGAGGGAGGAGCCTGG-TTTATTCACAGGGTTT-TCCCGAGGTACTGTAGGCCCCAGTCTTATTTCATTTGAGTTCATCTCAGTGTACTAAGG-------CAGCACTGAGCCTTAAACACCTGTC--------------AGAGAGAC----CTCTCCCTGTCAGCTTCTCCTTGGGAAGCAAAGACTGAGAGCC---------AGGGAGGGAGTGCCTTCT-----------------AGAGTTACA----GCAAACAAAGGCTG-----------------------------------------GAAGAGGAGACACCAGAGAGAAGAGG--CAGGGACTGAAGGACAAGACTAAAGAAGAAAACCAGCAGATAATACAGGGAGAAGGGATTTCAATCTACCTTGCTGGGCTGGGACATCTCAAAGTCCTCAGGTATTTCTGAA------TGTGAGTGTTCTCC----AAATATCCTATCCTTAAGAGCTAGACACCATCAGTGATCATCATATAAATATGGTGAGGGAATTTTTCTTTATCTGTCTTCTTTAA-GCTGTCCCCCAAACAGGAAAGTTCTCC--------ATTTGTCTAGAGAAATTGGGAACTAGTACTCTTTTAGCTTCTTTTATAGGTTGTTGGTTTTGGATTTGTCTCATCACAACTTTTTACTTGTCTTTCAAGCCTTGAA---ATGCTTCCTAGCTCTTATTT---------------TATGTATAGAGGATGGACAGCAATGTAAGCCAGGCTTCAG---CCTGTCCTGTCAGCTAGATGTTGGCAGTTGAGAAGTAGCAAAAAAGGC--CACCAGTTCAGTGGCC-TACACGATTG-----AGCCTGTTTTCATTATTCAGAGTTCAAGTGTGAGATTTGACAAGGTCAAGGAATAGCTTGTGACATTAATACTTACAGTTAGGGATGCAGAAAAGTTACATATGACCAGGATACAAATTTCCTGTTAAGCAGGACTGACAATTAT--TTCCAGTAGTTTTCAGGATGCAGATCCTTTTCTGGGAGATCAGTTGGCAGGGCTTCTATCATGGGCAAGTTGGTTCTTGCCTTTGATTTGGCTGATGAAGAG-GCTGAAT-CTCCCTCACTTATATATGAGTTGCCTGACCCACTGTGATGAGCTCATTTGAGGTGGGAGAGGTTGGCTAACGTA-AATTTTTCTGAATGAATGGAATCTTATGTGTTGTTTGACTATGTATGTGTATGTGTGCTTATTGTTCTAAAAACCTTTGTATGCTCAATTCTTAAGCTGTAA-TGTTAAAATTTTCCATCTGTAGGTATCAAGTGT-GTGTTCAAACAGTGCAGGGTGATGACTATGCCATTTTACTTCAACATTCCCTGCATTGTTTCTCAACCAA--GGAAAGTTGATGACTGAGTTCACAACCAAGGGAGTAGACATTTTCATACTAAGTG----TGAGTAAGCAGATCTTTCCTGCCTACAAAAATAGATAAGATTCTCGGATCCACAGAGCATCAAAATAGTCCTGTA-CTTTACACCTTAGTCCCTGCTGAGAATATCCACAATCAGAAACAAAGGCAGAAATTGGGGTTTCCAGTAGAGGCCTTAGAATCTGACAGGTCTGGCTAAGAAGGGCAG-TCTCTGTCCATACCCACTGGG-AATTTTGAGTATGTGAATTAAT----------------------------------GCTCTCACAGGTCACATTGAGGCTTAGTGAA--GTATATAGAGTCCTCACACATTATTTGGACCACAGAATGTGATTAGTGAATGGAAATAGCTGGTTGTTATC-TTCATGTTAGAGTAGAGATTGACTGATCATTCCTCAGTGACT----TAGAATATGGAACTTAACTCTAGGGCTTTCCATACTTCTGGTTGTCTAGTGGAACTCA-GTGATGGAGCCCATACCTGTTCCTATTTATTATTTAGTGCTTCTGAGTATTCTT---CTCTaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGAGGAGTCTTACAGGAATTTTGTCTTATATGGATTTTTGTAAGGGCCAAATACAAACTGTAGCATGGGAAATGAAA---TTTATACAGGGTC--ATTACTACTACTACTGAAGGACTTTAAACATAGTT-TCATTTGTCCACTGTGAAAGGCTCAGTATC---AGCTACATTCACACCAACGAACAGATGTCTCCTGGGTCTGCAGAATATGGCTCTGGAGAGGTGGTCCTGCTAGATACAGACAATAGGATCCTCACATCTATGGAACAACTGACATCTCCAGTTGGACCTGAGAAGCCTGAGCCAGGTGCTGGCCCTCAGAAGGGACCTAGAGAGTAGGGAAACAAACAGA-GTGTCATGCAGTTAG------------------------CATAGTCATTTTAACTGTCAGTGT-TCTCTAGGACCTGTGCCCTCCAGGACTGCCAGTCAGACTC--CATGTTGGTGTCCTGGGACCACCCTAAGATGTTGCCCAGGCTTCTTGGCTTCTTGGCTCTCAGTCTCCTGGCCTGTGGTAAGTTCTCTTTCTTCTTATCAGAAGTGCTTTTATTGAATTGCTCATAACTGTTCT-----TGTGTGACAGAAGTGTTCCCA----GTATTGTCTTTTCTAGAGCAT-GTACAGCTCTGCCACTTGTTGTACTGCTCTGGAATTGACAATTTCTAGTCCTGCCAGCTGT-----TGTGATTTTCCATCTTTCGTGAGTTAA-----TATGTGATTCTTATCTGATTTTGTGAAATTAGTAAATATTAAATAATCATCAACCACTTCTTAGAATTGTTATTGATGATTCAATTAGATATta
s HiC_scaffold_1 137536668 2739 - 233722169 GAGATGCCTATGTTGGAAGGGCTTATTGATGGCTGGATATGAGGAAGGCACCCCTGGAGAGTTGGGCAATCAGGCCCTTTCCCAGGGAGGAGGCA----CCTGGGCTTACTCACAGGGTGGGTCCCCAAGTGCTCTCAGCTAAAGTCTGGTTTCACCTGAGCTCCTCTTAGTG--CTGTGGACATTATCAGCTCCCAGCCTCAGATCTCTGTCCTCCATCTTCTGTTAGGGACACAGgactttcttt------ttctatctgaGAAGGCAGAGCTCAAATTCTCTCTTCTCAAGGAGAAATTTCCCTCTTAGTATGAGGGACAGAAAGGGTTAAAAGAGGAagacaaaggaggaggaggaagaaaagcagaaagaggagagggaggaggaggaagaggaggagaaaccaGTTGGAAGAGGGACAGGACCTGGAAGCCAAATCTGAAGGGAGGAGCTGCCATCCAATGAGAGGCAAGTGGACTTCACCTTGACCTACTGGGCTGGAATAGCACAGGGTCCACAAGTGTTTCTGAGCATGCGTGTGAGTGTTCTTTTTTGGAATGTTCTCTTAGAAGGAGCTGAGCTACATCATGG---------TAAACATGGTGGAACAAGTTCCCCTGATCTGCCCTTTTGAAAGCTTTCTTCAAAtcaggaatttttttctattttgcattttcctaaATGAATTTGATACTAACATTCCTTGATCTACCTTGCCAAGTT-TGGGTCCTAGAATTACCTCtaaataatttcctccctttttatagAGCGCTAACTCTGTACTTGTTATATCTCACTTGGGTCCAGTTATATTTAAGTATAAATGATGCATAGCAATGTGATCCAGAGCTCAAGTCCCTGTGTGGTC---------TCTGCTGTTGA-AGGTAGGATGGGAGACATCATTAGTT--GTGACCCTGGAAAATTGGTACTAGCCTA------------AAGCCTTAAGTGTGTGATATAAACAGCTTGGGATAAGATTTGTGATTTTAATATTCATGATTGGAGGTACAGAATGATTCAATTATATC------TAAACCTCCTACTGATTATGACTGTGGCTTCTGATTCCTTTGCCTTGCAAAGGTTAGCTCTTTTTTGGGGAAATAAAGTGACA------------------AATTAATCCTTATTTCTCATTTAGCTAATGAGGAAAGCTGAGTactttcattcatatttattaGGTGTCTGCTTATTTCTGATGGGATCATTTTGTCT------------TTAATGCATAGTTTTCCTAAGTGAATGGAATCCTGGATGTTACTTG-CTAAGAGGTTGCTTGT-----CCTGATTCAGGAAAGTTTTATGTGCTTAATTCTTAATCTGTGGCTCCAAAAATTTGCTCCCTGTGTACTCTGATTGTTATATAAAAACCTTGAAAGttaatgatttt--------------------------ctatttttcagttgatGGGTAAGTTGTAATTTTGGTTGATAGCTGAGATACTTGATACTT-CATATTGATTGAGCATGAGTAAGCAATTCATTTCTGCCTG---AAGGAGCTAAGA--------------GAG-ATAATTGCCATCCTGTGGTTTTACTTCTGAGGGCATACTGAAAATTTCCACTGATA-AAACTCAGGCAGATTGTGAAGTTCCAGACAGAGGCTCTAGAGTCAGACATGCCTGGATAGTAGGCTTAAAGTTCTGCTTCTACTAGTTAGACAACTTTGGGCAAGTGACTTAATTTAGCTGAATTTCAGTTTTCTGATGGAAACTATGGGCCTCATAAGTCACTATGAGACTTAATGAAATGTCTATGGAAACCTCAGCAAATACCTGGACCATAGTATGGAACCAATAAGTGGTAACTACTG-TAATTCTCATTCCTGTTCAGGAAGAAATTATCTGGGTATCTTCCAGGGATCATTGCAGAGTGAGGAACTGACTCAGATGACTTTAAGTACTTCCTATTTTCTAGT--AATGCATGTGATGGAGCCCATGCCCGACTCTATCAGTCATTCA----CTCTGAGCATCATTGCTCTTTTAACAG-------------------------------------TGGGACT--CAGAATGCATGTCTTATCGAGATTTT-ATGAG----AAGTA-AAATTGTGGCCCTAGACATGGAAATATCTGCACAGGGTTTGCTCATAACAACTACTCAACAGTTTTAGAAATTGTTATTATCTATCC----TGGAAGACATAAAGTTGAGAACTGGGTTCTTCTGAGGGACTAGGAGCTCCACAGGTA-ATGGGAGGTAGGTAGGAAGAGGGG---TGGCTAGAAATGGATATTAATCTGATTAGATTTAT--------TGATACGTGCAG---AACTTAAGAAAACTGAGCCAAGTACTA-CCTTCAGTGGGCCACAATGTGGTAAGGGAACAGGCAGATATACTGGGCAGCAAGTGGCTGCTTGATTTTAAAAGTAATCATGCTCATATTAACAGCCAGTGTCTCTCCAGGGTCACTGCCCTCAAGGGTTGGCATCCATACTCTCCCTACTGGTGTCCTGGAACACCATGAAGATGCTGACCTGGCTTCTTGTCTTCTCTGCTGTGAGTCTTCAGGTCTGTGGTAAGTTTTTTCTCCTTGTGTTAGAAGTGATTTCAAAGACTC-------ACTGTCATTAAActgaataacagaaaaattacCACAGTGTTCTCCCTTTGCTAAAGGATAGTGtaactttataattttaagttCTGTTCTGGAGTTGACAGACCTCTGTTCCACTCCTTGGCCTCATATGTACTACAGTCTTTAACAATTTACTTAGTTTTTTGAGTCTGATTTGCTTTCATGATATGAG----GATTA------TATTGCtcatttctt-ggattttttttgagAGTTAAATTATATACCA

a score=8071
s chr3            92012339 409 + 160039680 CTAAAGGATGTGGCAATGCAGGTCTTCCCCAGTGAGGAGGGAGGAGCCTGG--TTTATTCACAGGGT--TTTCCCGAGGTACTGTAGGCCCCAGTCTTATTTCATTTGAGTTCATCTCAGTGT-----ACTAAGGCAGCACTGAGCCTTAAACACCTGTC------------------AGAGAGACCTCTCCCTGTCAGCTTCTCCTTGGGAAGCAAAGACTGAGAG---------CCAGGGAGGGAGTGCCTTCT-----------------AGAGTTACA----GCAAACAAAGGCTGG-------------------------AAGAGGAGACACCAG--AGAGAAGAGGCAGGGACTGAAGGACAAGACTAAAGAAGAAAACCAGCAGATAATACAGGGAGAAGGGATTTCAATCTACCTTGCTGGGCTGGGACATCTCAAAGTCCTCAGGTATTTCTGAATGTGAGTGTTCTCCAAATATCCTATCCT
s HiC_scaffold_1 137522296 480 - 233722169 CTGGAGAGTTGGGTAATCAGGCCCTTTCTCAGGGAGGAGGCA----CCTGGGCTTTATTCACAAGGCAGGTTCCC-AGGTGCTCTCAGCTCAAGTCTGGTCTCACCTGAGCTCCACTTAATGCTATGGACATAGTCAGCTCTCAGCCCTAGATGGCTGCCCTCTATCTTCTGTAAGGTACAcagggctttcttt------ctttctctgagaagcCAGAGCTCAAATGCTCTCTTCCCAAGAAGAGAGTTCCCCCTTAGTGTGAGGGACAGTAAGGGTtagaaaaggaagacaaaggaggaggagaaagaggaggaggaggaagaaaggaggagaaaccAGCTGGAGGACGGGCAGAACCTGAAAGCCAAGTCTGAAGA-GAAAAGCTGCACTCAACGACAGGCAGGTGGACTGCATCCTGACCTACTGGGCTGGAACAGCACAGGGTCCACAGGTATTTCTGAGTGTGTTTATTCTTTGAA-ACCCTCTTCT

a score=24202
s chr3            92022453 1115 + 160039680 TGGATGATTTCTGGGTCAAGACTGGGCTATAGAGATGAGAATAGGAAGTTGTGAGAGG-ACAAGCACCTTCCAGGGCTAGCAGATACCATAGTTGGGCTGCTAATGTCTTGAGTAGGGTCTGTTACATGCTGATCTGTTGTCTCTCTTACAGGCAACCCAACCATAGTTTCCAGAAAAGAGTGGGGAGCAAGTTCACTTACCTGCAGAGTACCACTGAGCCTGCCCGTACCCTACCTCATCATAGAGCAAGTTACCAGGATGCAATGCCAAGATCAGATCACCTGCAGCCAGGTGGTGCGGGTCCTACAGTCCCAATATGTCCACAACAAAGGCTGGTGTGACATTGCCTTCAAGTAAGAGGCTGACCAGGT-CTCCAAATCAAT-----GTTACTTCT--TGAAGTATTCTCCTTTTTTTTTTTCCTTATTCTGCATCTTCTATTTTGGGGGCTTCATTTGTGCTGAGTTTATGACTGA-AGAGTGTTAGAAA---AAAAGAACAAAAATAAAATCT----------AGAAGTCATTAGGAGGAACAACTCTAAGTCATATATTC-----AAGGGTGCTTTTACTCTAGAAGATCATGAAAGGATACACAGAAAGTTTTGTACCTAGTGCCGTCAGCCCTGCAAGCTCCTAGCATGA--CAGATCACAAGGGTTTTCATTGCTATTACCCA----------------ACTGGGAGCAGTGTGGAGGAGAACGCTTACTATTTTCATTAACTGAATGAGAATGCCACAGTCCATGAAAACCAAAGAATTTGTTTAAAGTGGCACATGGCAAGG-AGCATGAATTCAGAATTGTGTCACAAATGTGTGTTGATACAGCCCACTCTTATTTGCTTCTTTCTAGTCAGGGCTCATA-TTTATGAAGCATTTTTTTTCCATTTATTTATGTGAATAAACACT----CAGTAAGACAAGG----AGAAGAGTGGGCATGGAGAATGGTGGGGAAGAAATCCTGTGTTAAAATTGAGTGTGAGGCATAAAAGATTTTTGCATTGTGCAATGAGTATTTA-----AGGGTTCTATTGAGGGCCCCCAAGTTTTTCTCATTAGCCTCAAGAATGAGAAAGCTCACCATTATATGAAGAAAGAAGAGTAAGGTGG-------------GAATTTAAAATGCAAGTAGAAATAGCTTCT
s HiC_scaffold_1 137541876 1107 - 233722169 TGGGTGGTTACAGAGTCAAA--CAGGCTACAGAGATGAGAAGGGGAGGCTATGGGTGATGTGGGCCTCCTCC----TTGGCAG---CCCCGGCTGGGC----------------AGGGCTTACTGCATGCCACTCTGTGGTCTCTTTTGCAGGTACTCCCATCATGGTATACCGCAATGAATGGGGAGCAAGACCACTCACCTGCAGTGCTCTGTTGAGCCCACCTGTGCCCTACCTCATCACGGAGCAGCTGCCGGGGATGGAGTGCCAGGAGCAGAGCATCTGTATCCAACTGCTGCGGGGCATGCAGTCCCATTCTGTCCACATCAAAGGCTGGTGTGACTTGGCCTTCAAGTAAGAAGTCAGTCAAGTGCTTGAAGCTCATATTCAGTTACCTCTCCTATGGTGCTCCCCACATCCTCTT------CTCTGCTTCTCCATTTTAGGAGGCTTcatttatattgcttttataatagacaaaataaaacatatttaaaagtaatCAAGCAAAATCTTGATTCCTCCAAAAATCATTAAGGGGAATAATTCTGAGCCATTTACTTTTATAAGTGGTTTTTTGACCCTGGGAG--TCTAAAAG----CAATCAAAGGTTAGC------TACAGTCATCCTTGGAAGCTTGTTGGATGACTCTGTGcacaaaattcttcaaaaatatgaCTCAGATAAGCCCTCCAAATACTCCAAGGAATAGGCAGAAGAAATATTACTGCCTTCACTTTGCAGATTAAGATGCCATGGTATAGAAAGACTGAAGAAATTGTATTAAGTGACACACTACAAGGAAATAAAGACCTAGAACGGTTTTGAGAATGTCTATT-----AGCTCAGTTTTGTCTCTTTCTTCACCCCTAGGGCTTGCACCCTGTGAAGCA---GTCTCCTATTCA-TTACCTTGATGGCCATCTTAACAGGGAGATCAGGTATCATAGGAATAGGAAT-CAGAATGGTGAGGAGCAGAGCACCAGCTCAAACT---------GCATGAAAGAATTTTGCATTGTACATTGAGTATCTATTGTGAAGATTTCACTGGAAG-CCCAAAGCAtttct----------gagacagagacag---------agacagaggaaacaGAGAAATGGAGTCCCCTTCtcatagaattttaaagaaaaagagaaatgacttCT

a score=8022
s chr3            92022584 312 + 160039680 ATCTGTTGTCTCTCTTACAGGCAACCCAACCATAGTTTCCAGAAAAGAGTGGGGAGCAAGTTCACTTACCTGCAGAGTACCACTGAGCCTGCCCGTACCCTACCTCATCATAGAGCAAGTTACCAGGATGCAATGCCAAGATCAGATCACCTGCAGCCAGGTGGTGCGGGTCCTACAGTCCCAATATGTCCACAACAAAGGCTGGTGTGACATTGCCTTCAAGTAAGAGGCTGA--CCAGGTCTCCAAATCAATGTTACTTCTTGAAGTATTCTCCTTTTTTTTTTTCCTTATTCTGCATCTTCTATTTTGGGG
s HiC_scaffold_1 137525190 308 - 233722169 ATCCATGCCCCTTCCCACAGGTGTCTTTACAATAGTCTCTCACAAGGAGTGGGAAGCAGCAGCTCCTGCCTGCAGGTCTCAGATGACTACATCAGTGGATGTACTTGTCACACACCACATCCCTGGACTGGAATGCCAAGACCAGACTACCTGCAGTCGGAGGCTTCGGGAACTGCAGTCCTACCATGTCCATAACAACAGCAGGTGTGATGTGGCCTACAAGTAAGAAGCTGGGCCTGGGCCTCCAGGC--ATGTGAC----CAAAGCTGCCCTCCTGTCCCTTCTCATCTGCTTTCACCTTCTAGATTGTGG

a score=9003
s chr3            92024491 248 + 160039680 AGCTCAGGTCCCTGGCTTGGGTCACACCGCGCTTTGTACCCTCCTCCCGTCCACGC-TCGCAGTCTCTCCGCCACCATGCCTATGTTCATCGTGAACACCAATGTTCCCTGCGCCTCCGTGCCAGAGGGGTTTCTGTCGGAGCTCACCCAGCAGCTGGCGCAGGCCACCAGCAAGCCCGCACAGTACATCGCAGTGCACGTGGTCCCGGACAAGCTCATGACTTTTAGCTGCAGGAACGATCCCTGCGC
s HiC_scaffold_1 149258036 249 - 233722169 AGCTCAGGTACCTGCACTGCAGCTGCTGGAATGTAGTCCAGTGCTTCTGTCCTCATGTCTTCATCTCTCTGTGAACATGCCAGTGTTCATTTCAAACACCAACATGCCCCACACCTCCGCACCAGGAGGGTTCTTCACGGAGCTCACCCAGCAGCTGGTGCAGGCCATGGGCAAGCTGGCCTGGGCTACTGCAGTGCATATGGTCTTGGACCAGCTCATGATCTTCAGAGGTTCATCTGAGCCCTGCAC

a score=9351
s chr3            92025593 356 + 160039680 TCTTTTATGAGCCTCTACAACCCCTTTGGGAAATGAATTTTCTTAATACAGAG-----------GTTTACCACTAAATCA----TTGTTTCTCCTTGGCAGCTTTCTGGTTGGAGATGATGGCAAGGTGTATGAAGGTGTCGGCTGGTATGTCCAAGGCTTGCACACTCAAGGCTACAATAACGTTTCCCTGGGCATTGCCTTCTTTGGCAGTAAGATAGGTAATGGTAATTTCCTCCAGACCCAGAAAGTGGTCCACCCACTTCCTCC-AGCTTCTTTT-CTCAATGCTCATATCTTTTTAGCCTACATTGTATTTCCCATCCCTGATAACCACTGATTCTGGAAATCCTTTCTGCTGTTGCACTCTATGAA
s HiC_scaffold_1 137526615 329 - 233722169 TCTTTTATGAGCCTT-------------GGTAAGAAATTTTCTCTCTCAGGAGTGTGCTATCATGTCAGCCACCAAATCTACCTTTGCTTACTGTGTACAGCTTCCTGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTCGGCTGGAATATCCAAGGCCTGCACATGCAGGGATAC---AACATCTCCCTGAGCACTGCCTTCTTTGGAACCAAGGAAGGTAATAATCAC----------CCCTGATAA---------CCCTTCTTCCAagattcttttgtttcattttcacacTCTGCTACCCT--TTCATAT-----ATCTCTGAAGATTACTGA--CTGGGCATGCTCTTCTCCCTTGGCTTCCATGAA

a score=47213
s chr3            92025602 3167 + 160039680 AGCCTCTACAACCCCTTTGGGAA-----ATGAATTTTCTTAATACAGAGGTTTACCACTAAATC--ATTGTTTCTCCTTGGCAGCTTTCTGGTTGGAGATGATGGCAAGGTGTATGAAGGTGTCGGCTGGTATGTCCAAGGCTTGCACACTCAAGGCTACAATAACGTTTCCCTGGGCATTGCCTTCTTTGGCAGTAAGATAGGTAATGGTAATTTCCTC---------CAGACCCAGAAAGTGGTCCACCCACTTCCTCCAGCTTCTTTTCTCAATGCTCATATCTTTTTAGCCTACATTGTATTTCCCATCCCTGATAACCA-CTGATTCTGGAAATCCTTTCTG-----CTGTTGCACTCTATGAACTGCAGTTTTT------TTCCTCATCTGTGGTCTATACTTCTTGATATATTGCTGCATCTGCCTCTTACATAGAGTTCACAGTTATGGACAAT------GGAATCTGAACTCATCTGCTACTAATATTTTAGTTGCCAGAGGCAGATA-TCATAGATTATttctt---ctagtatcctttattggtagaga-taaatggaggctagtaaccaaagcaaggaagtt-----gaagtagtttatatgaccct---tcacccacaaccagagcataacagagggcagagATGATGTTGAAGGCTAATAG--------------------------------------------------------------------------GTCAAAAC-------------GAGGAAAAAAAGAGTAGTCTGTGTTTGGC--------------------------------------------------------CCTTAC-AAGATGT---TCCTAATTGTGGTTGTT-----TAGATTT----CTGACGAAGAAA-------------------------------------------------------------TCTTTCTGCCTGTCTTTTCTCTTCCTGTCTACCAGTCACTCAGGTCTGGTAGAG-ACTTGCACTCCCT-GTGGGTACTGTCCAGGATGGAGTTCCTTACTAACAGTTTT-TATTTCATATTACCCCCATGAAGGAAGC---CCCAGTCCCGCTGCTTTATCAGCTACAGAGGATCTGATCTTCTTTGCCATCCAGAATGGCTACCTGTCACCCAAGTACATTCAGCCATTTCTCTTAAAAGAAGAGACCTGTTTGGTTCCTCAACACTCAGAGATACCCAAAAAAGGTGAGACCCTTAACCTATCATACCCTGCATTACATCACTCCCAGCTATATTTGGAGATGTTCT--CTTGTTAGACTCTCAAGGGTTTCTTGGACCTAGAACATCTCACCTGTGCCAAATCTATGAAATTGGGAAGTTAGATAAGTATTCCACCACTGGACAACATCCCTATTAATTAGAGAAGATAAGGAGACATGTTTTCCCTGG---CCTTTCCAACTCACAAAAATGTTATTGTCATGAACCTATTCTTACCACAAATAAATGTATA--CTCATATTTTTACAGTT----TACAAGAAACACTAA----------ATCTTCACAT---TGCCATACATCAGTTTAAAAAAAAATCATAACTCCTTCCATCAAGAAACAGCCAT--TTCAGTGAGAAAGAT------------------ACAAATGAAATGTGT----------TGGATATTATGGATG----------TGAGAGAGGAAAGTAAGACAT--------------GGGTAAT--GATccaggcggtggtggcgc----atgcctttaatcccagcact----------cgggagacag-----aggcaggtgg---------------atttctgagttcg-aggccagcctggtctacagagtgagt--tccaggacagtcagagctatacagagaaaccctgtctcgaaaaaCCaaaaaaaaataaaataaaa-------------------taaaataaaataaaa------taCATGGGAAATGAGTAGACAT------ATACTGTGGAAacacacaaacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacCTTTCCAAAGCCA----GCCAACCTTTTCCAATGCCACCGTGTTGATAAAATTGGACTTTATATCTCATACTGCCCTTATAATGGTTATTCTAATGAATAATGAAAATGGTATGCTAGTTTAGAAAGAATGATCAGTAAATTAAAACAAATAAAATTAATAATCACTT---CCAGTATGCTAGTTCTCTGCTAACACAGTCTTTCTCTCAGAACAACTGatattttaaatttcattttttaaaattataaatCTCTACAAAAAAGTCTT--TGCATTTGGACTGGTATTCTTTTCAATAATAA--TAATTTTGCAACATTGTCCGTTCTTTATAGAATTCATATTTTTCACATAAACTTG--ATCAGTTTAAAGAGTAAACTGATTTGCACATATCTACCTT----ACCA------------------------TATAGAACACATATAAGCATATAGATATCCT-GTGTTTTGAAGAATACAGTTGTGCCT--CTGTTCAATCAGTCTGTTCCTTTCAGCTTTCATATTGGTTTCTATGCCATTAAAA--------------------TGCACTGATTCAGG------CAGCTGCCCTTTCCAGACTCCTGCTGG-AAATTCATATTAGAATATGTTCATATTTTCAGGACAC----AAGAGACTT--GTGTGAACTACCCTCTGGCTGTAC-ATTGCTTTCATAACAGTCCAAAGAAAATTCTCATCCTCTTGGTTTTCCACTTTGCTGCAGCATGCCCCAATATCACACCACGGTCTGCTTGGGAAGCCAGAGAAACACACTGCCCTCAGATGAACCTTCCAGCCAAATTTGTCATCATCATCCACACTGCTGGGAAAAGCTGCAATGAGTCTGCAGACTGTTTGGTTCGTGTAAGAGACACACAGTCCTTTCACATAGATAACCAAGATTTCTGCGACATTGCATATCAGTAAGTGGAAAATGATTTGTTTCTTCAGAGCCATGGAAAGCAAAGCTGGCGGAGTGCA-------------------------------GGTGTTTTACACAAA-TGCCATACATTATTCTTGCAAGAATATGAACTGAGTAGAATTCAGGCTATTGCTTGGGCTATTTAACTGCTCAGGCATGTTCTCCATTGTGATTGGGAACATCACAATAATCAAATAATGAAAAAGAAGCAATTAGAAAGCAAAACTACGAACCC-----------CAAAGAAGTATGATGCCTTAGTATATACCCTGTTCTAAACTATAAGGAAAGAAGGTCGTGGCC----------------------AGCTCCAACTTGTTCTCTCTAGTGTTAGTATCTTGTTAGTCTTCTGCTAC--------TCTTCACACAGGAA---TTGTAACATCTCTGG-GCTCTTTTGTCTCTTCTTTATAGTAGGG---ACAACATATT--ATATTTGAAGACAGAGAATGAGAT-ACAATGTTCTCTTCTGGTTCCTTTCATACCAGTATTATCTTCAAGAAACATTTTA---------------------------GTTTAATTAAATAGCAGAAGATATGTAGAGGATTCCTTGTGCTTTTCATAGGTGGGACTTGGGGTTAGAAAATAATCCACTTCAGTTATTTA
s HiC_scaffold_1 137543368 3510 - 233722169 agcccctgcttatCTTTTGAGGATCTGTGTGAAGTGTTCTGTTATAGAGATTTATCATTTTACCCAAATGTCCTTGCTTGGCAGCTTCCTGGTCGGGGATGATGGCAGGGTATATGAAGGTGTTGGCTGGAATGTCCAAGGACTGCACACTCCGGGCTACAACAACGTCTCCTTGGGTATTGCCTTCTTTGGCAGTAAGATAGGTAATGGCCATGAACTCTTATGAAATCTTATCCAGAGAGTAGTGTGCATTCTTCCTCCATCCCCTAGTCTCA-CACACTTATCTTTTCAGCTTATATCATATTTGTCTTCTCTAATAATCATCCcccttttgaagttttttttttccccccgcTGGATTCTATGACATGCATTTCTTGAGTTCTTCCTT-TTTCTGGTCTGTACTTCTGAGTAAACAA-------TGGACATTACTTGAA---CTCAGTTACTGCCAGTACTTCTGGAATCTGACATTGTCTGAGACCAATGCTCTGACTGTCAGAGACAGAAAAGCATGGCTTATATCTTATTCTAGTGTCTTCTGTTGGTAGAAACTAAACAGAAGCCA-----CTAGGCAAGGAATTCTGGGAGATGTCATTTGTAGGCTTCCAGGTCACTAAGCAACTGAAAATTGCACAAA-CAGGGATGGACTTGAGAGCCAATAGACAATTAACTGGTGCCTGCCAGTATCCTTGATTGATAATCAGGCTAGTAGGAGCATTTATCTTAGAGGTTTTCTGTGAGAACTATATGAGCTAATGGATATGAAAGGGTTAGCACATGCCTGATGATGACAGTTACTTAGTAAATAACTGTTACATTTTTCCCATGGTAGAACACACTTGCCTTACTCAGATGTGTCTCCTCCTCCTGGTCTTTCCATCTGGAGTTGAAGTTGATAAATAAAGCCTACGTTTTGCAGTCAAAACTGTCCAAATAGTTCTTATATCTTAGACCCTCTGTTCTGGCCTTTGGaccaatttcttctctttctactcACT-GTTAGTCATGAGTAGATGAGCATTTGTCCTCCCTCAAAAGTCTAGGCTAAATTGGAGTTCCTTCCTGACAGTTCTATGTTCCCTGTCACCCTCTTTAAGGCAGCAGTCCCAGCCCAGCTGCCTTATCAGCTGCAGAGGGCTTAATTGTCTACGCAATCCAGAATGGTCACCTGTCACCCAGGTATATTCAGCTGCATCTCTTGAAAGAAGAAGTCTGCTTGGGCTCTCAACATCCAGTGATATCCAGTAAAGGTAAGCCCC--ACCTCATCTTCCTACTTATT----CTCACACAGCTGCATCTGGGAGTGCTCTTTCCTGTTGGATTCTTGTGGGCTTCTTTCATCAAGAACTTCTCATTCATGTCATAATTTTGGGACCTAGGAG----------ATTCT---------------------------GAGAAGGCAA-----------CTTCCTGGTCTCCTCTCAATCCCACTAGTAT---ATTTACATGGACTCATTCTTAatacaaatatgtgtgtgtgcacacatgtgcacaagtgtcattcagcaaatatttattatcagGTGCTCTTCAGATACTGGTCATACAGCTGTGAACAAAGCAGGCAGACCTCCCTACCTTCAGGGA-GGTCATGACACAGTGAGGAAAATCAGAAAGTAAGCTAACCAACAAGTGAAATATATGATCTTGGCCCAGAAACTATGAAAGAAACAATGCATGGGAGTGGAAtgcaataaatatatttacatatttgtgtGACTGAATTTACATATTTGTGTGACTATACTGTATTTACACACACAACTTTCTTAACTGCGAAAAACAGTCAATATGCAAATGGCCACAGAACTGAGAAACACTTGAATTCACAGATTATGTTGATAT-CATAGTGAATACTCCAAGAAACTGAGTAATA-AAAGTGTcacactgtcttaaaaag-----aaaaaataatttaaaactgataggggccagggatttagcttagtgttacaagctcctgcctggcaagcgtgaggtcgtgagttcaatccctgataccaaaaaaaaaaaaaaaaggtaaaatgtcAGCACTTGAA-------------ATATTTGTGCTGAGGTAGGCCTTTTCGGAGACTCACTGGCATTTTTTTTtagtgcca----------ggaattgaactcatgacctcgt--------------------------------------------gctcgcttggcagg------------------------------------cacttatgctactgagctaaatccct--------agcccctc----------attgacatttttaattaaattttt-aacattataaaTCTCTTAATAAAGTTATTACTGCTTTTAGGATGGTAAAGTCTTCAATAGTAAGTTAATATTTGTAGATTAT------TTTACAgattttagattattttcataCACATGTTATCAGCTCAGAGA--CAGCTAATGTTTTCATATCTGTCCTGTTCACTAACGGACATGTATTTGTAATGTATTTATAATGCATATGTAAACATGTAGGAATTcttgttttttgaagaaaatgactgATTCTGCCTGACCAA-CAGTCCATTCTATTTA-----TACACTGGTTTCTATAGTTCTGAGAACCCTATCCTGTATCCCCAGTGACCTGATCTAGAGAATCTCACCTAGACTTTTTAGGCTCTTGCAGTTAAGTTCATGTTAGGAAGTGCCAATAAATACTGGATGTCggagagagactgaggcacaaCCCAGCCTATGATTCTGTGACTGCTG--ATAGTGTACAAAGGCAAATTCTCATTTCCTTGGTTTTTTACTGCATCCCAGTTTGCCCCAACATCATCCCACGATCTACTTGGGAAGCCAGAGAGACACACTGCCCTCAAATGAACCTCCCAGCCAAATATGCCATCATTATCCACACAGCCGGAACAGGCTGTAATGTATCCATGGACTGCCTGCTTCGCATCAGAGGTATACAGTCATTTCACATGGACAAACAAGATTTTTGTGACATCGGATATCAGTAAGT--AAGATG------------AGAGCTGTGGAAAGGAAGGCTTGGGAACAGAACCAATACTGAGTAACCTCTTGATCCATACTCAGTGCTTTAAATAAAGCATCATCTTTCTTTCCTGTACAAGTCTG-ACTGAATA-------------TGGCTAGACTTGATTATTCCTCATGGATATGTTC--------TTGAGAAGACCCGGAAAAGAAAAC--TTCAGAAGCAGTAGTGACAATGTAAGACTGGGTAGCTTTGGGAAAGGACATTGAAGGAGGGTGCCTT-TTATGTGGCTCCTTGTCACCTGTCAGAGGTGAAGGCCCTCATCTCCCCTGCCTATATCTGACCCGAACCCAGACTTGCTCTCTCTGATGTTAGAATCCTGTTGTTCTTCTGCCATTGATGTCATTTATAGATAGGGGAGCTTTTAACCTTCCTATCCCTCTTTTGCCTCATCTCTGC-TTAGGGCCAACAAtatatttcctatttaaaaacagggagtgaaatgaaaatattttcctttggaTCCTTTAAAGGCAAGTATATAACAAAAAATCCTTTTATCCTTTTAACAGGATAGCAAATTATCCTTttactagaatagcaaaagctaCTTGAGAGACTCCTTGGGGTTTTTATAGA-AGAATTTAGGGATAGAATATAGTAAATTTCCATTATTCA

a score=5241
s chr3            92025666 123 + 160039680 TTCTCCTTGGCAGCTTTCTGGTTGGAGATGATGGCAAGGTGTATGAAGGTGTCGGCTGGTATGTCCAAGGCTTGCACACTCAAGGCTACAATAACGTTTCCCTGGGCATTGCCTTCTTTGGCA
s HiC_scaffold_1 137531325 123 - 233722169 TTGTGCTTTCTAGTTTCCTTGTGGGCCAGGATGGTGGTGTTTATGAAGGGGTTGGCTGGAATGTTCAAGGCTGCTCCACCCCTGGCTACAGTGATATTGCCTTGGGCATTGTCTTCATGGGCA

a score=6227
s chr3            92025676 129 + 160039680 CAGCTTTCTGGTTGGAGATGATGGCAAGGTGTATGAAGGTGTCGGCTGGTATGTCCAAGGCTTGCACACTCAAGGCTACAATAACGTTTCCCTGGGCATTGCCTTCTTTGGCAGTAAGATAGGTAATGG
s HiC_scaffold_1 137549241 129 - 233722169 CAGCTTCCTGGTAGGCGAGGATGGTGGAGTGTATGAAGGGCTTGGCTGGTACAGCCAAGGGTCTCACACCTACGGATACAATGATATCGCTCTGGGAATTGCCTTCATGGGCAATTTTGTAGGTAAGGG

a score=7303
s chr3            92026448 163 + 160039680 AGCCCCAGTCCCGCTGCTTTATCAGCTACAGAGGATCTGATCTTCTTTGCCATCCAGAATGGCTACCTGTCACCCAAGTACATTCAGCCATTTCTCTTAAAAGAAGAGACCTGTTTGGTTCCTCAACACTCAGA----GATACCCAAAAAAGGTGAGACCCTTAACC
s HiC_scaffold_1 137528084 163 - 233722169 AGtcccagccctgcagccctgTCAGCCATGAAAGGCCTAATCTCCTATGCTGTCCTAAAGGGCCATCTATCACCCAGGTACACCCAGCCACTTTTTGTAGAAGGTGAAAACTGCCTGGTCCCTC----CTCAGAAGACAATCCTAAAGAAAGGTGAGACCTCCAACC

a score=8049
s chr3            92027926 270 + 160039680 TGTACATTGCTTTCATAACAGTCCAAAGAAAATTCTCATCCTCTTGGTTTTCCACTTTGCTGCAGCATGCCCCAATATCACACCACGGTCTGCTTGGGAAGCCAGAGAAACACACTGCCCTCAGATGAACCTTCCAGCCAAATTTGTCATCATCATCCACACTGCTGGGAAAAGCTGCAATGAGTCTGCAGACTGTTTGGTTCGTGTAAGAGACACACAGTCCTTTCACATAGATAACCAAGATTTCTGCGACATTGCATATCAGTAAGT
s HiC_scaffold_1 137529319 268 - 233722169 TGTAGATGGCTGACATGGGTGAGCAAATCAAATTCTCtacatcttg--tttcttttctcccaaaGCTTGCCCCAGCATTGTTCCACGGTCAGCTTGGGGGGCCAGGGTGACCCACTGTCGCAAGATGATCCTCCCCGCTAAGTATGTTATCATCCTCCACACGGGTGGGAGAACCTGTAGTTCAGCTAATGAGTGCCGTCTCCTGGTCCAAGATCTCCAATCCCTCTTCATggacaaacacaaaaagtgtgATATTGGATACAAGTAAGT

a score=45096
s chr3            92029133 2600 + 160039680 AAGTTGATTCTTGTTCCTCAACTTTTAAACCTGCCATCGAACTGTAGAGTTA-GAGAAACAATAAACAA-TAACAATG--CAAACTGTTAAGCACAGTGATGGAAGAAGATCTAGGCACCGATAAGATGAGCCCAGA----AATCTTTGGAGGAATGATAGGTGTCAGAGAATGG-CTAGTGAAGAGGACTATCCTTCATGGAACATGAATAAGGTTTGGGGGCAGGTGCAAT--GCTTGGCAAA----AGGAAGTGATATAGTTAAAA---AACAGCACATTCAAAGGCTTGGGATATGAACAGAGCATGAGTCCTTGAGGAAATAAAACACAACCCACTCAGACCTAAAAATGGACTTACAAAGGAAGAGGTAGTGAGGGTGGGGAGCTGTAGGAGCCT----GACTGGTAT-GTAGATTTTTAAAAGTAAAACTAATGAAAACTGACTTTATATGGAGGGGAGCTGGAGACTGTGGAAAGCCATACCCTTTTAAAAGCTTTTTTGAAGATTTGTTTATGTCattttatgtgtgtattttgcctccatgtatgtatgtgtactacaaacacaaccagtgcctgcagaggtcagaagaggatattggatcctctgtaacaggaattacaaatggttgtaggctgccatgtgggtgctggaaaccaaattcatgtccagtgcaagagcattaagtgttctcaattgtggagtcatctctccagcctcCTGGGTATGATTTTAAGAGTAGATTAGAAAAAAGCAAAACCCTGGGCAGGGTGCTGTTACAGTAATCAAG----TTGGAGTTGGACAATGGCTATTGTATGGAAGGAGTAGAAGAATTTAAAAGTGATGTAAGAGACACAATTGATGAGTGGTGGGTAGTCCTTGACTGGAGCTCTGAGAAGGAAAAGGGGGAATTTCAGAGAATGCCTTATTTTCTGGCTACAGAAAATGTAAAAAGGTTTGGGGTTTTGGGGGGTTTTGTTTGTTTGTTGTTGGTTTGGTTTGGTTTTATTCTAGACCCAGTGGACTTTACAGAAAATAGTTGAAGCTGTGGGAGTGGATGATTGTTTAACGTGGCTGAATGTCTCAGCGGAAAGAGA---AGAGCTAGTCCAGGGTCCTAAGGAGAAAGTGTTGGGTTTTAAGAATCACAGTAGCTCAAG-------GAAGGCAGGAGAGATGGTGA----TCACCTGAAA-------AAGAGAGAGACTGAGGAAGGCAT-TGTCTATAGAAACCTATGGAGGAGAGTGCTGCAGAACCAGAGAGATCAATGGTCA-------------------AAACGCCTATTGCTCAGAAGGTTGAGGAGCATCACAGTCATTGTAGCTGAGTTAGATTCAG-GACTGAGGATGAAGGCCAAGT--ACAGAACTGTGTTTTGGCTTTTGGTTTTTGCTTTTCTGCACACTAGCACATGTGGCATATCTGGACACGGTGTGATAAATGGATGAAAGAATGGATTAAGGATTAAAGTTGATGAAGCAAAGTGT---GCTCCTCACACTGATTTCTTTGTTTTCCTCTACCCAACCCTAGCTTTCTAGTGGGCCAGGATGGTGAAGTATATGAAGGAGTTGGCTGGAATATTGAAGGCTCTCATACCTATGGATACAACGATATTGCTCTAGGAATTGCCTTCATGGGAAACTTTGTAGGTAAGACAT-AGTA-GGGCAAAGAGTTCGTCTTAATTAAGTACCATGTGGAATATTCAGGAAACATAGGAAAATGGAGACAGTATTATGACACTGGAAGTACATGGTAGT-TCAGCAGAATATTTTAGATTTAACGAAAATTCTCAATAAAGAATGACTGCTACAAAAAGCATATCCCAAATAGAATATTTGCCCCCAATTCA-----------GCCACATCCATCC------AAAACTATATCCAAGGTAAGCATGGAACAATGGAGGGGGGAAAAAGGGGCCTTTTGAAAATTTGATGTTTCAT-------TTGGGAAATGTGTGCATTTCCTTATTAACAGT---AGCAATAATGTGGGAATGTGTCATTGCCTATGATGACAAAGCATAGAACAATCTGTAGTTCTTCTGCACACACAGAATT--TGTGTCATGTTATATGTTCATTTCCAGGGTAATTTTTAATATTCT-AAAGAAATTTTGGCCAGATGGAATTAGAAAACACACTTGTTTGGGCTTTGTTTTGT-CCTAACT----AGTT-----------GTTGGCTATGGTGATTTTAGGAAAGGATAGGAAAAGAGACGAAAAGAGTGGAGTCTACGTATTTGTCACTGCTGTAGC-CAAGCAGCTCTGAGCTCTTAATGATCA--TGGGTAAATGTGTTTTACAGAAAAGCCTCCAAATGAAGCTTCACTGAAGGCAGCCCAGAGCCTGATCCAGTGTGCTGTGGCCAAAGGGTACCTGACCTCCAACTACCTGCTAATGGGCCACAGTGATGTGTCCAACATCCTGTCCCCTGGACAGGCATTGTACAACATCATCAAGACATGGCCTCACTTCAAGCACTGAAAAATGCTACAGTCCCATCTAAAGATGCTCTTTCTCCTGGCAGATATTGTCCTTATCTTTCACTTTGGCTCAGTTCCTTTGT-TCCCTCCTTATTCAATGTGTCACCTAGTCACTCTTTCTTGTGTTGCAATTACAGTATTC--TCTTATGGATATCCTTCAAGGTCTCCTGG
s HiC_scaffold_1 137548010 2333 - 233722169 aagttgaccactagttatcaaaccataacactttccTTCCCCTATAGAGTTAAGAGAAGTGATAAACAAGTAATTATATACAAAATGTTAGGCCCCGTGatggataaaa--caaaatatgcaTATAATGAGCCTCTATTCAAGACTTTGGAAGA-TGACTGGCATCAGAGAATAGTCCCGGAGGGAGGGGTGTTCATGTTGGCACATGCAGAAG---------CAGTGGAAATCAGCTtagcaaagaagaaagaatggTCCAGATAAAGGAGAAAATCATATTGTGGAGCCTGGGAGCTAGAAAGAACACT-GTTTTAGAAGGATGAAATCA-GTTTAACTCAAGTCTAAAACTAagcttccaaaagaaaaa-tagtaagag--aTAAGCTAGAGAGGCTTAAAGGAGTCACATCATGGCCCTTTATCATTGACCCTGACGA---TTGACT--ATTTGAAAGGTATCCAGAGACTATTTAAAGCC--------------------------------------------------------------------------------------------------------------------------------CTGTGATAGGATTTGTA------------------------TGTTAGAAA----------------------------------------------AATCATTT-------------GGTGCTGCTTTCTAAATGGATTGGAAGGAGACAAACCCTAGGGCAGGGAATTATTTCAGTCATCAGTGACCCAGGACAGGGATAATGGCAACTCATAAACAGAGGTGGGGAGATTTAAAAGCTGTGTAGGAAACAAAACTGCCAAGTCATGATCAGTGGTTGGATGGagctgggagagagagagagaggcattt---AGGATGTCCAATTTTCTGGCtggagaaattgaagaa--------------------------------gatgATGGTTTTGTCTGGATATGTT-----------GGATTTTATGGATGGTAATTGAAGCTATGGGAGTG----ATTGTCCAAGGGGAGTAGGT---TGAGGGAAAGGAGAGATAGGACTAGGCCACAGTCCTGAGGAGGAAGAGCAGTGTTCTGAGGAACACAACATCCTAAGATCTGAGGAAAGCAAGGTGGATGGCAGAGTCCCAATGGAAAGCAGTGGAGTAGACAGAATCAGTAGAGCATAGGCCTATGAAAGTCTGAGGGAAAAACATTTCAAGAAATATAGTCAGCATGGCCCATGTTTTCCAAAAGTAAGAGAAATGTCCTCTGTTTA-----CCAAGGAAGATGCTGGTCACT-CAGAAGGGTCAGGGTCAGTGGC--ATGGTGAGGGCAAAACCCACATTGCAGTGgattgtgtttttgttgttg---------------gcaCATGAGAAACATCCAGTCA----------------------------TTAATGATTTAAGAAG-TGAAACAAAACATCCTGCTCTCTAaagtgactttttcatttttctttgcccaATCTCAGCTTCCTGGTAGGCGAGGATGGTGGAGTGTATGAAGGGCTTGGCTGGTACAGCCAAGGGTCTCACACCTACGGATACAATGATATCGCTCTGGGAATTGCCTTCATGGGCAATTTTGTAGGTAAGGGGTGAGCATGGGTAGAGGG---GTTCTGGATGAATATTAT---------------AATAAGGCAAAAGGCAG------------CACTGG--GTGCCAGGCACTGTTggtgaaacattttaatttcaaagtagACTGTCAACAAGGGATGACTGTCACTAGAAATCCCACCCAGA-AAAACATTTATCCCTAATTCACCATTCCCATTTCCAGACCCATCTCACTTTAAAGCCATGTTCAAGA-AAGCATGgggcaa-----gagagaaaaaaaatcatctgaaatCTTTGAGGTTTTATGGGTCAGCTGGCAAATGTGTGTGCTTCCTTGCTAACAATCTGAGCTACACT-----------CCACATCCTGTGG---CATAGTGGTGGATGATTTGGTGGGTTTC-ACCTACTGAGAAGTGATGTATCCTGCTGGAC-TTCTATTCCAGAGCTGTTTTTGACTTTCTGAAAGAAACTTTGAGCAGGAGGAATGGGTGAAGACCTTAGCCTTGTCTTCTTTTTGTACCTGATTCCACAGTTCATGTAAATGAGTTGGCTGAGGTAGTGGTGGTATGCAGTGGGGTGAGGGAAGCAGAGA-TGGGATCTAGGTGCTTGTCCCTGCCCTAAAACAAGTGACCTTGTAGCCCTAATGATTGATTGAGTAAATGTGTTTTGCAGAAAAACCTCCAAATGCAGTTGCGCTGAAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGGTCAAGGGGCACCTGGTCCCCGACTACCTGCTGTTGGGCCATAGTGATGTGGTTGATACTCTGTCTCCTGGAAAGGCTTTATACAACATCATCAAGACGTGGCCTCACTTCAAACACTGAGAGCAGCCTCCTCTCCTTCTGGGGCTGCTCTTCCTTTCACTGGGTTTTGTCCTCACCTCTCATTTTGCCTGAGCACTTGTGTCTCCCTCCTCTGCCA--GCCCTACCTTGTTCCTTTTTCCCAGGTTGGGATGAGAATGTTCTTTCCTGTTAACATCCTCCAGTGTCCCCAGG

a score=8505
s chr3            92030535 220 + 160039680 TGATAAATGGATGAAAGAATGGATTAAGGATTAAAGTTGATGAAGCAA-----AGTGTGCTCCTCACACTGATTTCTTTGTTTTCCTCTACCCAACCCTAGCTTTCTAGTGGGCCAGGATGGTGAAGTATATGAAGGAGTTGGCTGGAATATTGAAGGCTCTCATACCTATGGATACAACGATATTGCTCTAGGAATTGCCTTCATGGGAAACTTTGTAGGTAAG
s HiC_scaffold_1 137531240 222 - 233722169 TAAAAGATAAAGgcatgaatgaattaatgaatacaGACAAAAAAGCAACTCAAAGTGCCTCTTTCATGCTAGTCTCCATCTCCCCTTGTGCTT---TCTAGTTTCCTTGTGGGCCAGGATGGTGGTGTTTATGAAGGGGTTGGCTGGAATGTTCAAGGCTGCTCCACCCCTGGCTACAGTGATATTGCCTTGGGCATTGTCTTCATGGGCACCTTCTCAGGTGAG

a score=4986
s chr3            92030629 125 + 160039680 AGCTTTCTAGTGGGCCAGGATGGTGAAGTATATGAAGGAGTTGGCTGGAATATTGAAGGCTCTCATACCTATGGATACAACGATATTGCTCTAGGAATTGCCTTCATGGGAAACTTTGTAGGTAA
s HiC_scaffold_1 137526701 122 - 233722169 AGCTTCCTGGTCGGGGATGATGGCAGAGTGTATGAAGGTGTCGGCTGGAATATCCAAGGCCTGCACATGCAGGGATACAAC---ATCTCCCTGAGCACTGCCTTCTTTGGAACCAAGGAAGGTAA

a score=4927
s chr3            92030629 125 + 160039680 AGCTTTCTAGTGGGCCAGGATGGTGAAGTATATGAAGGAGTTGGCTGGAATATTGAAGGCTCTCATACCTATGGATACAACGATATTGCTCTAGGAATTGCCTTCATGGGAAACTTTGTAGGTAA
s HiC_scaffold_1 137543450 125 - 233722169 AGCTTCCTGGTCGGGGATGATGGCAGGGTATATGAAGGTGTTGGCTGGAATGTCCAAGGACTGCACACTCCGGGCTACAACAACGTCTCCTTGGGTATTGCCTTCTTTGGCAGTAAGATAGGTAA

a score=15147
s chr3            92031346 416 + 160039680 CTGAGCTCTTAATGATCA-TGGGTAAATGTGTTTTACAGAAAAGCCTCCAAATGAAGCTTCACTGAAGGCAGCCCAGAGCCTGATCCAGTGTGCTGTGGCCAAAGGGTACCTGACCTCCAACTACCTGCTAATGGGCCACAGTGATGTGTCCAACATCCTGTCCCCTGGACAGGCATTGTACAACATCATCAAGACATGGCCTCACTTCAAGCACTGAAAAATGCTACAGTCCCATCTAAAGATGCTCTTTCTCCTGGCAGATATTGTCCTTATCTTTCACTTTGGCTCAGTTCCTTTGTTCCCTCCTTATTCAATGTGTCACCTAGTCACTCTTTCTTGTGTTGCAATTACAGTATTCTCTTATG--GATATCCTTCA--------AGGTCTCC----TGGGGAACTTTTCCAGTAATCTACCCTGGTCC
s HiC_scaffold_1 137532443 416 - 233722169 CTGAGGCCCTA-TGATCAATGGGCGGTTGTGTTTTGCAGGCAACCTACCCAATGCTACTGCACTAGAGGCAGCCCAGGACCTGATCCAGTGTGCTGTGATCAAAGGGTATCTGACCCCCAACTACCTACTGCTGGGCCATAGAGACGTGGCCAACACGCTGTCCCCTGGACAGGCTTTGTACAACATCATCAAGACATGGCCTCACTTCAAACACTGAAAATGGCTCAAGCTCCTTTGGAGGCTTCTTTCCTTTCATTGGGTCTCTGTTCTCACCTCCCATTTTGCTTCAA--CACTTGTCTCTGCCTCCTT-----TGCCAGCC--CTACTTTGTTCCAGGTTGTGATGATTATGTCCTTTCCTGCTAGCATCCTCCACCACCACCAGATCCCCATAGTTGGGCATTT-----ATAGCCTCCTTTGGTCC

a score=22757
s chr3            92032110 3106 + 160039680 TTTGCCTTTACAGT-------GTTTTTACAT------CTCTTATAACCTCACATTTACTCCGAATTTTTTTTTTCTTTTCACAGACCCTTTCCCTTGAATGTCATTAGATTGACTCGGCTCAT-TTGTCATTTTTCCTAAAGCATCCCAGGAATGTAATCAGGAAAAGATTAGTGGGTACA-------ACTTAGGAGAGACACACCTG--------CCACTCCTGATTTACACAGC-AGAGATAGATAGAATACAAACCTCACAAGCCTTTCTGTCAGAGTCTCTCGACAGTAG---------------AGTCCTTTCTGTGTGGATGGAGGTTGGGTACA----------GACTTCCCAGCAAAGGGGGATTGAACACCTCTCTTACAGGAAG---------TAGTTACAGTTGTAG-TCATGAGATGTTCAGAAAAAGTTTCACCCAAAGACACCtgccagggttt--------------------------------------------------------------------------aaatgaacc--------------------------------------ttttgacatt-----catgtattagaaacccagtcgctaataatcagtagtgtt--agagatggaccttttgagatgtaatta-----TTAATATTGTTGCTGTAAAAGTGAGTTTGTTAATAAAATGAG--------------TGTGTTTCCCCAC-ACACAGTCTCTCTTATACTTTCCCACTCTGCCACTGGATGATACAGCAAGAAGGCCTTGGCCAGATGATGACCT---------TGAATTTCACAGAGTTCAGATTACACAAAATAAATCTTTGTCCACTGTGATTAACCCATTCTCGAGTATTCTCTTAAAGAAACACACAACTAAGTCATCAA-TATTGATTTATTGACTTTTCTTAATTATCCCTCAAAGTAAAGATCCCTTTTCTTTGAGTTAGTTACCACTTTCAGGTCTCAGGGACTCATTG--------------------------------GCTTGGGAAGGGAATTAGTGAGTCCCCCATCTCTGACAGCTCTTACAGAGGC-------------TGCTCTGT-----------------------------------------------GAGGCCTGTGTGTTCTAGATTGGTGT----------TTACTCCAAACTATCCAC-------CTTTTAGGATTTTAAA------------------------TTTATGC-------------TTTAACTAAACCC-------------------------------------------------AGAGCACTCAGCT--------------------------------------------------------------------------------------------------GGCAAGTGCTTTTTTTAAG-------------------------------------------------------------GACCTTTTTGTGGCAGCCTATTGCAGGCAGTTTGTCTCTTCTGTCTTTTTATTGAGAAATACTTCCTAGTACCCCCTTA------GGGATATACTAGCATCAGCCTCCAATGACTG--ATAGGCAGTCTA--AATGGGTGGATGTGAGCAGGAATTTTTAGAACTTACTGTTGCCATTTAATCAATGTTCGGCTGAGG----CATGCACAATCTTGTCCTCATTGTCTGTA-------GAGTGCTTTCCTCTATTACTCCTGTTTGACTCTCAGGGGAAGGATGTGCTTTCTTAGGTACCTACCTCAGCCACATGGGGGAGTACTATGTCAGCAGACGTCAAGGTTGGTGGTGAGCAAGGAGGAGCCAGGTGCACCCACAGA-ATGC-CAGGTCTGAGGGAACCTATGGGGAAGGAGCACTGACATGGCCCTCAGGACTGCTAGCCTTCTCTGGGAGAACCCAGTTCCTGAGCTCAATGACTTGGTTATTTTCTACAATT-TAAGCTAGGAGTACAGGAAAGGCT---GGGTTTCTTTTAGTTCCAGA---------AATAAAAAAGGACAAAGTCCCTATTTTACATAAGATTGAA--GAAGCGGGCCTGTGGCTTGTTTTTCTTCATCCAGTTAGTT-----AATAGGAGATACTCTGGTTCTGGGGTGAGGCATGATTCTCATCATCCCCTTG-TGGAAAGCATACTGTGCCCT---CCTTCTGACTGTGTAAAACACCACTGTCTCATCTTCCCAC------CCCTTCTGCCCG-----------------------------CCTGTGCTCAT-----------------------CCACCATCCTGATGCC---------TCTTGCTTTTAAAGTTACTTTCTGAAGGTTAGCTTTTCCAAAACACCCC---CTTCCTGGTCCCCACA-GACTTTCAAAGGTCTCTTGGTGACTTATCCCTTTTCCTGTTACC--CCCTCACAATCCTGGCCTCCCTTTGAGCAGTACCTGCTGTTTGCTGG-AACATCTCCAAGGCTCCACCCAGGGCCAGGTGCATTATTGTCGCCAACTAAGCATCTGTGGAATGAAGAATGGTTGGTGCTATCAGGAGGA--GGGTGGTGGATTCCCACTGAGTAAGTCTTGGATTCTTGCTGCAGAGTGGAAAATCCCAGCATTGTTATAAC------AGCCCAGCCCACTTGCTGTGATTGC-CAGATTCATTACA----------AGGTAAAGCT----CTAATTCTAGACCACTCCTTATCTCCACCTTGTAGTGGCATTCCTACCAATTGTGAGATCTGG--AGAGTC--ATTCTCCAGGATCTATGTG---TCCCACCCTGCAGTC--TGTGACCTTACTATGGGGAGGGCTTCAAACCTGGAGAGCACATGG--------CCTGATACTGTTTTCCTGCGA----------GATGCCTCTTCCTTCTGCTCTGCCTCCC--CTCAAGCTTCC-ATGTGCCACCTTGTCACTTGG-CCTGTCTTATCTACACTTCTGTATCTTTTTCTCCACTGTTTCTCTCCTTGCTGTTCTCCCTCCCACA-TCTTTG-CTACATCTCTGTCTCTCAATGCATCTCATTGTCTATCTCTGTG---------------TGGCCCTTCTGGCC-------ACTGCCTTTGCCTTTTCTCCAGAATTATTCTAGAATGAACAAGGAACAGGATGGTGGGA-ATGCACGGTGGCATCAATTTTTAGCT--TGGAGATACTCAGGGATCATTTTCATTTGGACCCTGAAAATCACCTGTG--CTGTGCCCTGAGGTTACCACAGACCCTGGAGAGTGGGAAGAAAAGGGCAGAAGGCCAGGGGTGTGGTGATTCTAAGGAAGGTGTGTGTTTTTCAGGAGCTTAGAGGCAGCCATAGCTGGTCCAGGTGTATTTCTAGCCTAGCGGGTTCTGCAAGG---CAGACCCGAAAAGGGCAG-GAACTAAAAGAGAGAAGGCATTAATTATAAGAAAGGAGTGGTGGGAGGGAGAGCAATTCCTGGGAGATGAGGCATAAACTTTTACAGT--CTTTTCACAGTAGACTGAAGTAATAAGTGTCTCTTTATGGACAGGAAACTG-GGGGCTCCTCTCAGGGA-AGCTGGGGGCCCACTGACCTAAGTGATACGGCTA----TTTTGGAAGAAAGCTTAGGAATTCCTACTGATCTGCATGCTTAGCTTGTAT-CCAGTTCTAGAAGCC--TACATCTTAAGGTCACCAAATTAAGATTGACTCATATTGGCCTTCGTTGGCATCCTGtttttttgttt--gttttgttttttcttt
s HiC_scaffold_1 137551570 3715 - 233722169 TTTGCTGTGACAGTTTACTCAGTTTATACAAGTTAGACTTTAATAGGCTCACATGTACACAG---CTCTTTGTGCTTCCCCAAGGC----TTCCTGAGGTCTCACTAGGTTGACTCTTCCCCCCTTATCATTTTCCCTAAGGTGTCCTGGGAGATAAACAAGGGAAGGGATGGTTTGTCTACAAGATCAACCGGTCCAGACAGGCTTGGTCCAGAACTTTTCCAGATTTACACATCCAGAG-------GAATGCTGCTTCAGAGAGCTCTTGCGATAGGATGCCTCTCCAAGGGTCACTTGGCCCACCCAGCCCTTCCTGGGGCAATAAGAGCAGGGCACGTCCTGAAGACAGCTCCTCAGAATAGTGAGTTTAACAGCCTCTCTTGCAGGAGGGTTAGAAGGTAATTTTAAGGGCAGATTGTGAGATGCTCAGAAATGGTCTCATAAAAAGCTCtctactggggatttagctcagcagcacacaagtgcctgtctgacaagcagAAGGTTGTAAGTTAGAccccctatttaaaaaaaaaaaaaaaaaaccaaagaaaagaaaagaaaaagaaaaagctctcTACTATGCTTAGACAGTGAAGTCACTTTCTGGAAGTCTCATTGCAAACTGGCAAAGGCATTTAAAAAGCAGggctttttaaagataattagCGCATTAATGTTGCTGTTGTGAGTGTGC-TTTGTTGTGAGTCCGATCTTTTTCTTCGTTCTGTCTCTCCTCACTCCATATGCTTCCTTGCCCTCCCATGTTCTGCTATCTGGTGACACAGCAAGGAGAGCCTCCTCCCATGTGGACCTCTCCTGCCTTGCATTTCTCAGCCTCTAGACCGAA-GAAATAAATTTG-----ACTTGGATGA---CAATCTGAGTGATTCTTTTCAAACAGCACAAAA--GAGACATCAACTTTTGGTATCTTTGAATTCCTTA-CAAACCTCCAAAGGAAAGGGTTTCTTCCCTTGATTTAAACACCATTTCCAGGCCTCAGGGACTCATTGCAGTACCGCAACCCAGATCTTGCAGTAAGCATGTTTTGGGAAGACTCTAG---ACCTCCCATCTCCACCAACACACATAGAGGCCTCAAAACCACAGTATTCTGTAATTCTTGACCCAGGTTGGGAAATTTGAGGCTGTCCATGGAGAAAGAAAGACTCAAGTCTACTGGACTGTCATGATGAAAGGATTTCTGGAGGTTACCGACTCCTTTGTTTCCATAATTATAAAAACCTCAGGCAGGACAACCACAATTTTGAGCCTagcttgagcaatttagcaagaccctgcctcaaaatagaaataaaaaatagggatggggatatagatcagtgagAAGGCAGACAGCTGATGAACAGGCTGGTTCAATTCAGCCTGttcagtaaaacacacacacacacacacacacacacacacacacacacacactgcaattTTGCATCATCTGGGTTAGTACTTTTTCTAAGATACTTACTTTTGTTAATCTTTAATATACAATCTGAGTAAAATCAGAACACTCAGCCAGCAGATGCTTTTAAAGCAGCC-ATTGCATGCAGTTTGTCTCTG-TGTCCTTTGATTTTGAAATTCTTC----TACTCATTTACAGTGGTGGATGTGCTAAGACTA-CTTCAGAGGACTGTTGTAAGGATTCTATGAATGAATATATGCAAGCA-----TCTTGGAATTCATGCTCAACATACAGCCTGCATTCCACTGAAGTTAACTCGCGTATTCTAATTAATATTGCCAGCATTGTTGTGATTGTTGCTTTCTATTACTCCCCTTTAGTTCTAGCAGGAACCACACACCTTTGTAGGAACCAAGCTGGGATGCTTGGGG------------AGC-----CCAAACCTTGGGATGAGC-AGGAGGA--------CCCTTACAGAGATGTGCAGATCTGAGGTAGCCATTGAGAGAGGAG-AGTCATAT-ATCTTCCAGACCGCTGAGACTGTCAGGGTAAGAGGATTCCCT--------TGACTTG----TTTTCCACAGTTATAATCTGGGAGAA----AAAGACTCcagagttttctttatttctagacTAGTGTGTACTTAGGTAGTTAAAATTCTCTATCTTACAGAAGATTGAACCCAAAGGGGCAG--------------TTcacacagtaagttcaaaaaGCAAGAGGAATTCTGAT-------TGAGGC-----TCCTCTCAGCCCACTGCTGGAAGTCAAGCAAAGGCCTCTCCTTTCcaacagagaaaagta-aaatgtCTTAGGATGTCATGTGGGATTCTCCTGCCTGTTTTCCAAAGAAGGAGTCTTTCTGAGTTCTCTGTGCTGATGCTGTTAACCACACCATTCCTACCCCCTATCTTGATCTCCACTATTTGCCCTGTTTTCTAAGGTGACTTTCAAAAACCAATTCTTACAGTAAGTTCCTGACTCTCTAAACCAGAAATGACTTTCTCAGACCTCTTGGTGGCTTGTCTC-TGTCCTGCTTCCTTCCTCCAGGCCCCTAGCCTGCTTGGCAGCTATGTATGCTCCTGGCTGGTTTTATCTCTAGGGCTTTGGGCTTGGTCAGGCATGCTGTTGGGGCCACATATGTGCCTGTGGAATGAAAGGTGG--GGTGGAGTCCACAGGGCTGGGTGCCAG-TGCTCCCTCAGCTGGTATGGgagccttg-----------------ccagcatttttgGGCTGCAGGGAACCCAGCCCA-GTGCTGTGATGCCTCAGAATCCTCACAGGAATCTCAtaggttaattttttcttcattccaGGCCATTCATCACCCTTCCCCTCTAGTGGCTTCCCCATCAGTGGTGCAATCTGGGAGGAGTCATATTTTCCAGTACCAGTGTGCATTGCCACCTCTAGGCCTTTGTGATCTTCTCACTGTGGTAGTTACAGCCCTGGAAAGTAAATGGTTGAGTTTCCCAAGGCTGAGCTCTCCCAAAGACCCATTGGTAGCATTCCCCTGAGGCTCTTCCCCTCTTCCCCTGCTTCCTACACTCTTCTTTGCCCTCTGGAACTTTTCTTTCCACatcttagtctttttttct---ttgtctttgtctctacC-TCCTTCCACTCACACTCTTTGcctgtctctcttttcctcaAGTTGTGTCACTCTCTACCTCACTGCTCCTGACTTTCTGTCAGCTTTTCTGCTCTGTATGTGCCTCCTTTGCTCTTTCTGCAAAA-CACACTAGAGTGAAAGA-------AATAGTGGGAGAAAAATAGTGGTGGTCATGCATACCCCATGGACTTGCACAGG--------TCATTCTGGCACTGACAATCACCTGTGCACCATACCCTGGGGCTTTTGGAG---CTAGAGGAGCAAGAGGGGAGGGCAGAAGCCCAAGGGCAGGGTAGCTCTTGAGAC-ATATTTGGTTTCCAGAAACTTACAGCCAGGAAGAGTAGGACCAGGTACATTTCTGGCTCAGCAGCTTCTGCTGAGCTCCAGCATTTAATAGAGCTGAGCTCTGAAGGAAAGAGGTTATTAA----ATGGGAGGAGTAGTGGTGGGTTTGG--ATTTCTAAAAGGTGTGGCTGGGACTTCTTGGGGAATTTTCCACAATGGGTTTCAGTAACAAATATCTGCGCATGGGTAGGGCTTGGAGGGGCTCCCTCCTGGAATAGCTGAGAGCTCTCCAA---GAATGCTGCAGCTACCTGCTTTGGAGGGCAGTTGTGGAATT--TActactccccaccccacccccacataCCATTTCCTCTAACCATCACTTCTCAAGG-CACCAGA-----ATTCTCCTATTCTGTTCCTCACTAGCAAC----TATTCAACTTCAGTAatgttttttctct

a score=17167
s chr3            92035707 1536 + 160039680 ACACTTCAGACTTGCTACATCACATTTAGTGAACATTAG--CTGCTATTCTTTCTTGGTCTGCCTTAAAAGCAGGTGAAAATGCAGTTGTTTTCTCTGAGTCTGTATTTATT---ACGCCCGTTTGGGGAGATGTAAAGAAGGGCCC-TCTTGTGCAAAAATGGAAAGATTAGAGGGAACTTAACCCAGGGTTAAAGTGAAGTGCAGTTATCTACCAAAGAGAATTACCTGGTGAGTGACTG--AGGGCCTTCTGTTGTTTTC-----TTGTCCCATCCATGAACGTgctctgtcctgggtgcatgacatatgtgattttgtttaatcccca-----gctctgcagatcagtagctagcttcctatcagacttaaggaaataggatagattttgtgggatcaattcagtttcttaaagtcacacaacaaatacatatcaatgctgaaatGGGTCACTATTTCTTTATTAT-ACCAACTGTCTTCTGGGTGCTCTCAAGCCTTT----------ATAGCTGGTGA-----CAAACATCAGTGGTCCCTGCCAGAGTTAACTAAATTCAAATATTTCCCTTGAACTAACAATATGCTTCACTT-----GATGTTAAATATAAAATT-TTAGGTCAGTGGTGTAGTTTTAGGTTCATctcctcttcctcctcctcttcttcctcctcttccttctcctcttcctcctttttctccttctcctcttcttcttcTGAATCTTTGT--------TAACCTTTGCAATGCCTCTTAGGACTGTCTTACTTGTCTAGCCACTATATCACACCATGGGCCCTCACTTTATCAAACATGCTATTATCCCACCTCTCACCCCATCATACCTTCA-CAAGCATGTTTGTCACCCACACTGAAGGACTCtggtttgccc----------------------------attcaaatctgttgaaatagctgtgaatcttggttctgtaattcTTT-TG--TTATTGCTCACTTCTTTATCCTAAGATCAT-----------CATCCACCCATCAAACATTTGTGTGTATTGGGCAACATGCCCAGGGTACGTTTATGCAGCTCTCCCAACCTGACCTACAGAAGACTACTACTgtgaacaggacagtaacattgtctccattttacaggccaaaaccaga-------------ctcagctgaggttcagtacctATTTCTTTGCTAATATCTTTTGT---TGATTTAGCAGGGACCTACCTCCAGCTGTCTATAATCCCTgaaagcatctcatgtatcccaggcaggcttcaaactcactgtataatcaaagatggccttgaactctgaattcttctgcctctaccctcttagcatgcctgcatgcCTGTCTTGATTCTATTGATTCTGTCAGTCATAAAGGCACTGAACAAGTACTACCCATCTTCCAAGTCTTGTAAGTCTATAACTTGGTGG------AGAGGAACTGGGGTTAGAAGGAAA--------------------------GTGCATATACATGTGCTATGTGTTAAACCAGCACTGCTCATTATTGCTGTTTAGCAGTCCATTTCTATTACTGAGAA-----------------CCCCTAGTATTCTT----ATGATGataaaaaaattat----ttatttttGGCTAGAAGGCAAGGATATCCCTTAACTTTGTTCTTTTTT
s HiC_scaffold_1 137555383 1492 - 233722169 ACTTTTCAGACTTGCCAGACACCAATATGTGGGGATCAGGACTATGGGACTCTATTGGCTTGCCT-GGGAGCCAGTGCTAGTGC-----------CTAGGTTTGTTCTCATTCACATTTCAACTTGGTTAGAGGTGGGAAAGAGCCCAGCCTGTG--AAGATAAAAGAAGTAGCTGGAAACTGAACAGGGGCCAGAGGAGGTTTCAGAAgactccagtgcagatctccatATTGGGTGACTGTGAAAGCTGAGAGTTGGTGACACTGGTTGTCCTCTCCACATGCAGACTTTGTGAAAGGCACATGAGATGTGGGATTTCATTTAACCTCCAAGACAGATTTTTTGACCAGAAATTGCCATT--------------GCTACATGATAG---CTGAAGGATC---------CTTTAAGGGCACACATAGAGTGTATGCCACTGCTGCGCTAAAACTCTGGTCCTTTATGCTCATCAGCTGTCTTTCAGGTGTTCACATGCCTTTCACAGATATGAAAGGAAGTGAACCAACAGCCAAAAGTTCTTTGTCACAGAGTTCACTGGAG-CAACGATTTCCACTGATCCAATAAAATTCTTCAGTTAATGAGATGATACAAGTAAAATTGCTATGTGAATAGTGTA-TTCTCGATTCATTTCATAATAACAACAATAGC---------------------------------------------------------AATAGTGGCAAACAAGACAACCATAGCACAGCAATTTAAGATTGCTTTACTTGTCTGGCCACCACACCACATCATCAAACCCCACTTAATCACAGCTGCTATTTATTCAAGTCTAACCCCATCACACCCTCACCAAACTTGTTTGTCAGCTTATAAGCAGGACTCCAGGTTGACTTGATTCATGTTAGTAGTGTTTCCCTATAATTCAAAtcttttgaaatcattttgaaTCTTGATTTTGTCATCCTTTATGATTCATTGCTCACAGCTTTATCTTCAAATCTTGCATTAttatccatccattcacccaaCATCCCT-CATATTAGGCAAGGAGTTCAGTGCAATTTTGTGTGAATCACCTAG-TTGACCCTCACAAGAATGCTGCTGCAAACAAGAGGGCACTATCATTACCCTTTTGTAGATTAATAAAGGATGTAAATTGGGTGCTTGTCCAAGGGTTAATATGTACTACTGT-------TGTTTTGTATGCTTTTTGGCAGAGATCTCCCTCAAA------------GCTGATAACAACCCATTAGCCATAAGAAG-------------------------------------------------------------------------------------TTGCTTCTATTTCTTATACCAACCCCAAAGACACT-AACAACCACTGTCTGTCTTCCAATTCCTGCAAGT-TAAAGTCTGCtggaaggaaagaacaattgtgACTGAAATACAGACATATACTGCTGCATGCACACactcatgtatgtgtatgtg-tgtgtgtataacaaGTACCATTGTTTATGACTATTGATTAATCCATTCTCATTATTGAGTATGTGCACTCATCACTTGTCACCAATATTCCTTAAAATCACAATCTAAAACTTTCACCATTGTTTCTTACTAAAAGGCAAATATATCctttaattctttcctttttt

a score=8276
s chr3            92051318 201 + 160039680 TTTTATAAAATGTAGTTTTATTTTATGTTACTCTGCTGTTACATAGGACATAACATTTTCACAAGGCTTTTTTGGGACTACAGTCAATAATTACCAAAGACAATATAGTGGTCTAATTCTCTAAAGAACAACCACTGGACAAAAAAAAAAAAAAAAAAAGAGGACACCCTCTTATATGTGCACAAATCTGTATGGAAAGGT
s HiC_scaffold_1 227408706 182 - 233722169 tttttttaaatatagtgtaATT--GTGTTATTCTGCCATTACACAGGGCATAACATTTTCACAAGATTTTTCTGGGACTATGGTCAATTACTGGCAAC-ACACAAGAGTGATCCAACTCTCTAAGGAACCATTGCT----------------ATGTAGACTGGACACCATCTCACATGTGCACAAGTCTGCATGGGAAAGT

a score=61618
s chr3            92079238 3361 + 160039680 ATCTCTGATGCAAA-TGATGAAGGTAGTGATGACTCCAAATGGAAGAGTGAGATGAAATCTTTTTATTTCTATCATTAGCTAAATGTAGGAAGGCACATTGGCTTTTTAGTATAGCAAAATTAACTTGAGTAAGTCAGTAAGTTAGCATTTACCTAAAGCTGATAAAATCTGACTGTAAAACAGGATCTGGCCAGGGGATGGTTGTTA-------------------------CACATGCCTTTGAGCAACTCTAGCTTTATGCTTGCTAATCAGGAGGCCCCTAATGTTTCCAGTGACCTCTGTGATACTGATGTTAAGCATCTTAAATACTTACGATGTACCTTCTCAAATTGGACGAAAGCTACGCGTTCAATCCTTCAAGAGGG------------------CTGCCTTCTATCTCTATAGATGCTCAGTAAACTGTCTCACACACTGTAGAGGATCTTGATTATCTGATATAATATTTTTCTAACAGACTAACAAAACCAGACTTTATCAGTATTCAGGAGAGCTGCGCTGGTAAGAAGGTATCAGGCTTAATGAAGAACTGGCAATCTTGAGAAGACATAGAGGGTTTGTATCTTTGCCTCAAAGCTCTATCATGGGTCATGAGTAAGGAAAGTAGTTATAGTGTTCCGGAAGATCGCATGGGCAGGGGTCTTTTGTTCAGGGGTGAATGTCCTTCTTCTTAGGTCAGAACATGTCAATGGACTTGGACCTCTGGTAGCTAACCTAATCTGAGAGCCATCCTGCTTCCAGAACTTGGAGAGTGAACTCTGCACTGCTAGAAATTGCCTGCGCAGGCCCAATTTCAGTGATGTGTAGGATGTCCAGTGAAG-ACTTTTCTTGG-----TGTTTGAGGACCATCTCATGATTTTTAAGCCACACCCCAGACTGTTCACAACCTTGGTCATCCTTTGC---CCCATTCCATCTATCTACTCCCCCACCTTGGGATAGAACACTTGTTCAGTGAATT-TAAATG------TGAACTAATGAATGGAAAAA---GCAAACACAGAATGAACTGAGTAAATTTGCAAGCTACAAAGACTACAGCAAACTCAGAGATTCTCATGAATAGCA-AATTTATTGACTGAGGAGACACTAGAATTGGGAGGTAGTCATTCAGAAACCAAGATGAAAAATCTGCAGAACAGGATACACCTTGAGCGACTCAATGGCTTCTTCTGGG--GGAAGGGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTCTCCGTTGCAACCCGGTGACCTTACTTGCACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTGGTGGCAGACTGGCACACCCTTgccacctcca---gagccgccaccagaggagccgcctccgcagctggagccaccgcctccgcctccggagtagcctcctccgcagccaccg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccgctgcctccggaagagccacctcc------------gcagccaccgccgctgcccccggaagagccgccgccacagccaccgccgcctccggagtagcctccaccgcagccaccgctgctgccgcc-accaccgctggagtagcagccaccgccgccaccgccgccAGAGG--AGCCACCTCCA--CAGCTACCACCTCCTCCGGAAGAGCCCCCTCCGTAGCTCTGCTGGGGGGCGCAGGAGGTCTGACTGGTCTGCTGAGAGGAGTAATAGCCCCCTCCGCCGCCAGAGGAgccg-ccgccgcagctgccaccgccaccaccggaatagccgccgccgccgct---gccgccgcAACTGGAGCCA----------CCACCAGAGGAgccgcctccgcagctagagcctccgcccccggagtagccgccaccgcagctggagcctccgcccccggagtaacggccgccgcagctgga---gccaccgctagaaccgcctccgTAGCTCTGGCACTGATACTGTTGGGACGATccgccgccgccgccaccggaggaaccacctccgcagct------gctgccgccgccaccggaatagccgccgccgccgccgcagctggatccaccgccacctgagtagccgccgccacagctagagccgccgctgcttccaccgccgccggaatagccgcctccgcagctggagccaccgccgccaccagagtacttgccgcctccggaaccgccgccgcagccaccggagctgccgcctccagaggagcctccgcagtaggagccgccgcctcctgatccgcctccgcagctggagccgccgccgccacccccggaggagccgccgccgcagctagagccgccgccgccaccacctccgGAGTACTTGACGCCCCCACCAGAGCCGCCACCGCCTCCACAGCTGGAGCCACCCCCGGAGTAgctgccgccgccgcagctggagccgccgccgcctccggagtagccacctccgcagctggagccgccgccgcccccagagtagccaccgccgcagctagagccaccaccgcctccggagtagccgccgccgcagctagagccaccgccgcctccggagtacttgacgcccccaccggagccgcctccaccgccgcagctggaaccacctccataggaaccaccgcctccgcctccacagctagagcctcctccagatgagccgcctccgcagccagagccgccaccgctataatagccgccgccgccgccgccgccgccgccTCCTCCTCCACCAGAGGTCTTTCCACAACCCACAGGAGGGCAGGGAGTGGGCTGCTTTTTCTGGTGAGACATCTTGTTTAAGGAGAAGGGTTACCCTGGAAGAAGAGCAGAAGAGCAACATTAGACCAACAGCAGCAAGAGGACGCTGTGAAGGTGGCAGAT-GCATCCATGCCAACATACTTCTGACTACTAGCTTTATGCAGACTAGGTGTCTGGACTCCATTCCT-----------------------------------------GGACTGGTTAGCTCTTCAAAAGTCCC---------------------GTTAATAGTGACCCCCTTTTCCCTCAACTCTGCCTTTCTTCTACTATGTGATTTGGGAAGCAGAACCCCCACATTCCCACCTGCTTTTGATCTTCCATTAA-----------TAAACACTCCATGTCTAAGGGTGCTCCCAAGTCCCAGTGCTGATTCTTTAAATTC-AGTAGAAAGTTGCAAAAATTCC---------ACGTGGATTTTATCCACTCCCAGCACAATAAGAAAAGATTTGTTTGGACATTAGCA-----------------TTTCCTGCATAAAGTCCTTAGTTTAAACTCTTGATCTGTCCTATTGAGTGAGGATATCCTCCAAGGGCCAATTATTAGACAAGACA--GCTCTACTGTGGTCCTGTCTGCAAACAAATGGAAGAACTCTG--AACCTTTTGGACCAGTACATCTAACCAGAAGAAAGTAGACATCTTTTTGAGAATATGCAGGAGTCTAAATTTGGTAGAC
s HiC_scaffold_1 137582581 3191 - 233722169 ATTTCTAATATAAAATGATGAAGGTGGTGGTGG--------GTGATTCTGTGGTAGAACTTTTCAGTTGGTAGCAGTGACTAGGTA-GGGAGGGGACCTTGGCTTATTGGTGTT------TTGCtttaagaaaatcaataaattaacATTTATCTAAAGCTGGTAAAACTAGAATGCAGAAGAGGATCTGGTC---TAATGGTCTATATCTCTATTGAGAGCTATGCAATTACCACAT-TCTTGGAGCACCTGTAGCTTCTTCCTTGCTGATTAGAAAGTCTTCTCTTTTCTCATGGACTTTCTGGTAACTG--------TATCTCACACATTTATGCTGCATCTTCCTAAATTATCTGA------------CACTTTTCCGAGAGGGACGGGACTAGGTTCCCTACTTCCTTCTGTCTTTGCAACTACCTATTAAGGTGCCTCACACATTTGAGAGACTCATGAATActcaatatattttttctttctc-------------------ttgtaagCTT------GGGTAGCATAGGAAAGA--GCATAGTTCTCAATGGATAATCA-------------------------------CTTTGTTTTTAAACCCTA-----------------------------------------------CATAAGCGCTGGACTAT---------GAGACAGACCATCTTTCCAAGACA--ACCTTTTAAAAGATTTG-AGCTCAAAGAACAGATCCCCTCC-----CCATCCTCCTT---------------------------GGCTA------------------CCAACTTC------TTGGAGGCAGTTTAGTAAGGTACTTTAATCAGATCCTCCTTTGGGGACCATTTCATGGTTTC-AAGTCTTAAAGCAGACT---------TTTAGTCATTGTTCACTAGCCATTTCCCATTGCCAACTTCTGTCACTTG-------ACATTGCCTCAAGAGATTATTAACGACACAGTggacaaatgaatggaaaaaaaggttaagacagaatggaacagattaaTTT-TAAGCTACAAAAACGGCTACAGATTCAGAGATTCTCATGAATTGCATAATTTATTGATTGAAAAGGCACTGGAATTGGGAGGTAGTCATACAGAAACCAAGAAGGAAAAACTGCAGAATGAGATGCAGTCTAAGAACTCCCATGGCTTCTTCTAGGTAGGTAGAGACAC---------GAAAAATTTGGAAACCTGGAGCAGTATCATGAGAACATTAAGCCCATTGATGCCCACGGAGAACATCTCCAGCTGTTTTGCCTCCGCAGTATCCAGGGGGGCTTATTTGCATGGCCAGCTAGGTGCCTGCTTCTGCTGGGTCTGGTGACAGATCGGGACGCCCTTGCCACCGCCAGAGGAGCCGCCGCTAGAGGAGCCTCCTCCGTGGC-GGAGCCA---CCCCCGCCCCCGGAG-AGC--CCCGCGCAGCCGCTGCCCCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGCGCCCCCCGGGAGGGAGACCCCCGGTAGAGTTTGAGCACTGGTTAACTCTGAACACCCAGAGGCCGGCGGC-------CGGCCCCCCCAGAAATAGCCCCCCGC-CGGCCAGCTAAGC-GCCGCCGGCCGCCGC-----------------CCGCCTTCCTTCCCAGAAGTAAGCCGCCCGCAGGCAGC-----------CCAGAACCGCCCCC--------------GGAGGGAGC---------------------------------CGCCGCCTTC----CCAGAGTAGCCGCCCGCTGCAGCCGGAACC-CGCCCCCCGGAGGAGCTGCCGCCGTGGCTCTGGCATTGGTAATACTGGCCGGAAGACCCGCCCCCCAGAGGAGCCGCCGCCGCAGTTGGAGCCACCGCCCCCGGAGTAGCCGCCG---------------CTGCCCCCAGAAGAGCCGCCTCCACAACCTGAAGCGCCCCCGGAGGAGCCGCCGCCGGAGCTGTGGCAGTGGTAGTGCTG---------GCCGGAGCCGCCGCTGGAGGAGCCGCCGCCGCAGCTGGAACCGCCGCCGCTGCCTCCGGAGTATTTAATGCCTCCTCCGGAGCT------ACCGCCACCT------------CCACAGCTGGAGCCGCCTCCGGAGGAGCCGCCCCCTGAGTAGCCG---CCACAGCTGGAGCCGCCGCCG------GAGT---------------AACCCCCGCCACAG---CTGGA---GCCGCCTCCGGAGGA------------------GCCGCCCCCTGAGTAGCCACCACAGCTGGAACCGCCG---------CCGGAGTAGCCGCCACCGCAGCTGGAGCCGCCGCCG---CTGCCTCCGGAATACTTGATACCTCCTCCCGAGCTACCGCCACCTCCACAGCTGGAGCCGCCTCCGGAGGA---------------------------GCCGCCCCCTGAGTAGCCG---CCGCAGCTCGAGCCGCCGCCG------GAGTAACCCCCGCCACAGCTGGA------ACCGCCGCCGGAGTAGCCTCCTCCACAGCTAgagctgccgccgcc---------------------------gccgccgccgccaccgcaGCTGGAaccacctcca---------------------------------------------------------------------------------------------------------ccaccacctccaccaccaGAGGTCTT---GCAAACCACTGGAGGGTAGGGGGTAGGCTGCTTTTTCTGGTGAGACATCTTG-CTAAGGAGGAAGGACACCCTGAAAAGAGAGCAGAAAAGCATTACTGGGC---TAGCCACACGAGGGTGCTGTGAA--TGGTAGGCAGTATCCATGGTAACAGCCTCTCTGCTCTGAGA-----GCAGCCTGCTTGGTTAGGCTCTACCTTTCAGACGCCCCAACTTTCAGATGGGTTACTACTTTTGGCAAAGAGTTAATTACTCTTTCAGAAAGCCTTGGCCACGTTGGAATAGCCAAGTTAGTAGCACCTACCCTCTCTCCAAGCTCTGCCTGAC-TCAAGGGTGTGTTTTTTAGAGCAG-ATCACAACACTCTTG-CTGCTTCTCATCTT-CATAAAATGGAGCAGTTTGAATATTTGTTTCTCAGGCTTGTTTC--ACTCCCAACACTGATTCTCTGAGTTCAAATAGAAAATTACCAAAAATCTCTACTTAGGAAGGGGAATTTTACCATTTCCAGCACAATCTAGGGAAATGTGTTGGGGTACCAGAGGATTCTTacaacctgtttttttttttcaacgtCTTGAATTCAAACTCTTGACCTGTTCCACTGAGTGAGGCCACAACACAATGGCTAGTTACTAATAGAGGCAGGGCCTTTCT-TGGCCTTGTCTGGGCATAGGGAGGAAGATCCAGGTGGTCCTTTGGACAAGTATCTCCTAC------ATCTCAGGCATCTCTTTTACGATATGCTGAATTTGAAACTTGGTACAC

a score=30788
s chr3            92081189 746 + 160039680 gaaccacctccgcagctgctgccgccgcc--accggaatagccgccgccgccgccgcagctggatccaccgccacctgagtagccgccgccacagctagagccgccgctgcttccaccgccgccggaatagccgcctccgcagctggagccaccgccgccaccagagtacttgccgcctccggaaccgccgccgcagccaccggagctgccgcctcca------gaggagcctccgcagtaggagccgccgcctcctgatccgcctccgcagctggagccgccgccgccacccccggaggagccgccgccgcagctagagccgccgccgccaccacctccgGAGTACTTGACGCCCCCACCAGAGCCGCCACCGCCTCCACAGCTGGAGCCACCCCCGGAGTAgctgcc---------gccgccgcagctggagccgccgccgcctccggagtagccacctccgcagctggagccgcc---------gccgcccccagagtagccaccgccgcagctagagccaccaccgcctccggagtagccgccgccgcagctagagccaccgcc---gcctccggagtacttgacgcccccaccggagccgcctccaccgccgcagctggaaccacctccataggaaccaccgcct---ccgcctccacagctagagcctcctccagatgagccgcctccgcagccagagccgccacc------------------gctataatagccgccgccgccgccgccgccgccg---------ccTCCTCCTCCACCAGAGGTCTTTCCACAACC
s HiC_scaffold_1 137584256 756 - 233722169 GAACCGCCCCCGGAG--GGAGCCGCCGCCTTCCCAGAGTAGCCGCC-----CGCTGCAGCCGGAACCCGC-CCCCCGGAGGAGCTGCCGCCGTGGCT----CTGGCATTGGTAATACTG--GCCGGAAGACCCGCCCCC-CAGA-GGAGCCGCCGCCGCAGTTGGAGC---CACCGCCCCCGGAGTAGCCGCCGCTGCCCCCAGAAGAGCCGCCTCCACAACCTGAAGCGCCCCCG---GAGGAGCCGCCGCCG---GAGCTGTGGCAGTGGTAGTGCTGGCCGGAGCCGCCGCTGGAGGAGCCGCCGCCGCAGCTGGAACCGCCGCCGCTGCC---TCCGGAGTATTTAATGCCTCCTCCGGAGCTACCGCCACCTCCACAGCTGGAGCCGCCTCCGGAGGAGCCGCCCCCTGAGTAGCCGCCACAGCTGGAGCCGCCG------CCGGAGTAACCCCCGCCACAGCTGGAGCCGCCTCCGGAGGAGCCGCCCCCTGAGTAGCCA---CCACAGCTGGA------ACCGCCGCCGGAGTAGCCGCCACCGCAGCTGGAGCCGCCGCCGCTGCCTCCGGAATACTTGATACCTCCTCCCGAGCTACCGCCACCTCCACAGCTGGAGCCGCCTCCGGAGGAGCCGCCCCCTGAGTAGCCGCCGCAGCTCGAGCCGCCGCCGGAGTAACCCCCGCCACAGCTGGAACCGCCGCCGGAGTAGCCTCCTCCACAGCTAgagctgccgccgccgccgccgccgccaccgcaGCTGGAaccacctccaccacca------cctccaccacc

a score=49541
s chr3            92082988 1996 + 160039680 AACAGAGTACCTTCCAAAGGGGAGAAAGGCTCTGTTCCTTAACCTCTCTGCAAGCTGAGCACGGCCAACTGGAGAGACCAGACAGCCAGGAGAGCCCACACTTACCTGAAGCACCAGGGAAGATGAGTGAGGGAAGGAGGTGATGCTGATGTGAGGGACACTGGTGCTCCTG-TGTTTTATACTCTTGTCCTGCTCTGACTCATCTATTGATCAGGC----------------ACCTC------------------------------------CTCCCTGTGATTGCAGGGGAAGGATTGACCCATTCATGAAGATTTCAA-ATTCTTGGGATAGGGATAGGCAGTTTGGTGTATGACTGG-CCACTTCTCTGATGTAACAGT-GAGCAGGTTGGTCATTAGAGATGGCCAGC-AGTGTGGATGGCAGAAATTGTTTTCAAAACTTCTGTA-TAGGTTGCGTGCCATAACCAGAGGGCTATTCTAGAGGATTAGGTTGCAGACTTGTGAAGCAGCCTTACGGAATC----TAGAGATCTAAGACATTG-TCTAAGACATAGAAGCTAGTTCAGTTGTATCTTTCCAATTTTGATGTTTGGTTTTGATTTCATTATCTTGGAAATTCTCGAAATTTTAGAATCCATCTCTCTTATGCCACAATTTCTCCATTCC--AGTTTCATGAACACTTCATTGGGTTGCTTCTGTTCTGCTTACTTTATTGGTTGTGAGAGTTCATGAGTCCCCAGCTCCCAGTTTGGGATGGTACCACGGAAAAGACAGCACTGTAACTAGCATGACTTTAGTCTACTTTAAGTTATTCCTTGTGAGAGCAGGTGTTTTGATCTTTGTTACTGACTACTGACTTTACTTACAAAGGTGAGAACTAACAAGACAGACCCTGGCAGCCTTTTC-ACCATGACCCTTTGA-TTCTGATGTCCTATGGTGCTGCACAGTGACTCTGACCTC----TGAGATGCCACCATAGagtggaatggacttagagatctca--gttgggttcaggtctttccattactattttcaagctatgtcaccatgggcaaagccacAGTAGTTCATGCAATGCCACCAACAGGGCAGTTACTGAGTACTTGTTCATTG------------TTGAGCTGTCTGATCCCCATTTG---GTCTACCAAGCAGGAATCCTATAATTTATTTCACAGAAACATGAAAATGGAAGTTATGAAATATGAATGTACTACATAGTATGTGATATTAATACTTTTGCTCTTTTCTCACATGACAGAACACTTTTCCTTCCAATCATGCCTGCCCTTGAACCCTA---TTGGAAAGAAGGT--------GTGTGAAGACATCTTAACTATTTTCCTATAAGATTTACTCAG---TTCTCTGATGACCCTAGGGCCAAGAGCAGCCCCCCTCTGTGTATGAAGAACATAGTGTTTTTCCTTTCTTTCATCATTGGAACTCAGTTGCTATT-AAGATACCACTGTTGAACCTTGTTCCACCCAGCT--GTGTTGAAAGAATAATTCTAATCAGAAATTGTCT--TAATTATGGGGGAGCATTAATGATCTAAACGATCCTGATTAGACTTTGGCTCTCAGAAACTTGTGCCACTTGTTTCAGTTTGGACAGTATGAACTCAGGTGATCCAAGGAGGATCCTGGGTGTTCCTGTTCATGGAGGATATACTAGGGAGAAAAGCCAGGATCTTTTGGAGAGGGCAGGCTTCTCAACTTGAAGCTGAGACACCATGGTGGCTTTGGAAGGAAACAGCACCTTCTTTTAAATTTCTTTTGATTGCCATGGGTAGGAGTTATTTTGTTTAGTCAGGCAACATGGGAACAAGTTTGAACTGAGGCTCTTAGCACTGAGCTGTGGACCACATCGACCCACTACAATGCACTCACCAAGCTGAAGGAAAAGTC-AAGTTAGCATGAAGTCGGTAGGTTATTTTGGGCAAGAGAAGTTTGTAATTAAAAAATTATAGCCTTCCTTCCTTTTTTGTGTTTATGTATCATTTATTATACATATACATAATCTGAGCTGAAA------AGTG----CTTTCATA--CTCATGTGTT-AAATGAAATGTTTTGA
s HiC_scaffold_1 137585774 1936 - 233722169 AACTAACCAACTCCCAAAGTAGAGAGAG-------TCCCCAGCCACTG---AAGC---------CTAGCTGGGAAGATGAGA--GCCAATAAATCCC-CACTTACCCAAATCAACAGGTAGGATGAATGAGGAGAGATGATGCTGGCGATGTGAGAAGCACTGGAACTCCTGAGGTTTTATACTCTTTGCCTGTCCTGACTCATCTATTGATCAGGCCAACCTCTCCTGTTTGACCTCACTTACGTGACCATGACCCAGAGTTGTCAGCCCCACCTCCTTGAGATTGCAGGCCCAGGGT-GGCCCATTCATGAAGATTTTGGCATTCTTGAGATGAG------CAGCCAAGTGTATGACTGGTCCACTTCTCTGATGCAACAATAGAGTGGGCTGGTCAGTGGGGATGTCCAACCAGAGTGGATGGCAGA---CGTTTCCAGAATCTCTGGAATGGGTCACATATCATAACCAG---------CTTGAAGCCTAGGTCCCAGATGTGTGAGGCAGCCTGTGAGAATCAAACTGGAGATCTCAATAGTAGATCCAAGGAATGGGA----------------CCTTTCAAATCCCATG---GCTTCTTATCTTATTGGTTTGGAAAC-CTTAGAACTTTAGAATCTGTTTCTCTTTTGCCACAATTTCT---TTCCTGGGTTTCATGAGAGCTTTGCTGGAATGTTTCTGCCCTACCCACTG----GGTTGTAAGCGTACAGGTG-CCCCAGCTCCCAGATGTGGACAG---CACGTTTTAGACAGTGCTGTAGATGACA---CTAGGGGCTACTTTGAATTGTCTttgtagaaagcagg---------cattggAATTCAATATTGACTTTGC----AGAGGTACAGACTAAAGAAAT-GAACTGAATAGTCTTTTCTGCCATGGCCCTTTGACTTTTGATATCTTGGGGCA----------ACGCTGACCTCAGCCTGGGGGGTAACTATGGAATGAAATAGATCT-GAGGTTACATGACTGGGTTTGGGTGCTCCCTTTGCTACTTGCCATCTATGTCACCTTGGTCTAAGTCATAGCTCTTTATGCAGTGCCTGTAG-ATGGAAGGCACTGGGCAAGTGTTTGTTGACTATTGAATGATTAAGCTTTCTGAGCCTTGGTTGCTTGTCTATCAGATAGGAATAGTAATATCTATTCTGTAGGCATATGGAAAGAGAATGGTTAAAGTATAAAAG-------------GTGATGCtggc---ttttctgttttgtgaCATAATTGCACATCCTTACTTCCAACCTCATTTAACCATGAATACTAAGGCCAGAAAGGAGTCTATGAATGGTTTGGAACAAGCTTAAGTTTTCTCCTAGGAGGttaattcaaaatttttctgTTGACTGTAGC-CTGGGAGCA--TCACTTCTGTGTTTGTAGAGCAGCAAAGCTCTCCCTTCTTTCGTCATTGGAACTCAGTTATTATTTAAGGTATCACATTCAAAC--TATTACACCCAGCTATGTGTTGAAACAACTGCTCCAATAAGAAATTGACTGTTAATTATAGTGGAGTTTTAATAATTCAAATGATCTTGATTAAACAT-GGCTTTCAGAAACTTGTAGCACTGGTTTCAGTTTGAATAGCAAGAACTCACCTGA----------ATCC-AGGTGTTTCTCTCCTTCAAGAACACTCAAGAGAAGGAAGCCAGAATCTGTTGGAGAAGGCAGTTTTCTC----TGAAGCTGAA----------GATTTTAGAGGGAAACAA----------------TCTCATGAGT---AGAAAAAGGAATCA-TTTATTTGTATGAGCCATATAGGAAAAGG---GAACTATGACTCCCA-CACTAACCTGTGGTCCACATTGGCCCATTACCATGTGTTCATCAGTTCTTAGTAGACGTCTTAAGTAAAATGATGTTGGTAGAATGTTCATGGGAAGGAAAGTCTATAATTCTGAAATCATggctttcctatttttttt---tttttgtgtta------aaATACTTATAAAAGTGGAGGTGAGATGCTATAGTGGTTTTTTTCATAACTTTATATGTCAAAATAACATTGTTTGA

a score=3987
s chr3            92087090 121 + 160039680 TTTGAGGGCCATGAAATTTCTTTATGGAATTCTAAACCTTGGAAAACTCAAGTGCAGTCGACTCCAAATGACTAACAATTCAAAAT-----GTCTAAGAACTACATTTAGTTTTAATTGATGTACT
s HiC_scaffold_1 137587705 122 - 233722169 TTTGAGGATGTCGTTATTTCTCTGTGGAATTCTAAAATTTGAGACTCTCAAGTACAGATGACCCCAAACCATTAATAATCTTAAATTATCCATTTaagcat----ttttttattaattGACACATT

a score=62903
s chr3            92094531 5733 + 160039680 [encoded data, 6605 characters]
s HiC_scaffold_1 137593698 5760 - 233722169 [encoded data, 6605 characters]

a score=46877
s chr3            92103833 3399 + 160039680 AATTACAATTGCCTCTTAGTGTAACA-GATGTGTTTTCTTCTTTAATAACAGCATCTCAAAGAAGAGTTGAGCCACATTGAGCTTGGTTCAGACCTATTACCAGGAAAGAATGCA-GAGCCTGATCCATCAGAACCAGTAGATTCTGGCAACACTTGTGGGGCAGAT------CATATCTTAGTAAAGATGACTGAGTTTGACAGGTCACATTGGCCTGTGGGACAATGTCACATGAAGCAAATGAGTAAGCCATTGAACAGATTAGTCCTAATGGGCTGGCGTAG--TTATTTCGTATAATTCTTAAAATAACTTGTGAATTCAACA-TGTGGTTACTCCCATCTCACAGCTGAGTATGTGCAGTAAG------AAAATGCTGCTACCTTCACCGGACTCCAGTGTCTTCCAAGTTCTGTTGCAGTTTGGCCAACATCTTTAGAAGTCAGAGAGAATTGAGGCT---GTTTTTC-TGCCGTGATCCAGAGTCTCCCTGTACAGGTGTGGAAAGCAGACCCT---GTGAGCATATGTT-GCTCTTTATCCATGGAGGACTTATTTTGCGGATGAGTGAACTATGAGCCCTGCTTGGGGACTGAGGGATGAATAAGTGCTTTGGGGGTTGGAGGGACCCAGGAGAACAAAAGTGTTAGCACTTTCTCCTAAAATTAACCCTTCTTTTAGGATG-ACAGCAGTATGCAAGACTTGAGTCTTCT-----------CAAGGGGGCCAATGACCTCCTGCTTTCATCACACTGGATAGGCCAGATCAGCAGGACTCTATCCATCACCCATTGTGGAAACCTGCTCCCTCCCAATG-AGGCCTCTCTCTGCTTGTGAAGCTCATCAGG----TTTAGCAACCTGGCCTCTCCCATGGGCTGCCTTTCTAGTTCTCTCTGACAAGATGAAGGGGTTTCTTACCTGCTCAGCTGGGAGGATAGATGGGTGGAGGGGACTGTAGTGAAACAGG---TGGCCCCACCTGGCTCTGCAAGGCTTTTTGCCACATGGGGCCCATGGGTCTTGGGAAGTCTGAGGCAGCCATAATCTACACATTCAGGAAGGAAGAAAGTCTTGGGGTTTC----ACgtgtgtgtgaatgtgtgtgtgtgtgtgtgtTTtaacatacctacatttaccttttattaagtgacagccacttgtcaagaactttatatcaggacttaagttcatttcaacaataaacaagagaaggaggtatttttctccatattttacagataaaaaTCTGTCATGCCCATTACTAATTGTGTCCACT-GACACCCCGTTCAC---------GTGAGCATGTACTGTTTGAATGATGAGGAAACAACCGATAGCACAGTG----CAAAGGCTGGTG-------TAGCCTCAGGTGGGATGATGGGCATGAGTGTGCTAGACCGATCACGAAGTGCTGC-CTGCCACTAGAAATAGACTTCCTTCTAAAGATAAAGGTTCAGTACATTGCAGACATTGTGCAACACTGCCCTATGTGGACTAGAAAGCTGAGCCCTGTTGCTTGGGATGCTTTGCCCTAATGA------------------------------TGGTATCGGTTTTCAAG-----------GCTCCAGGAATCAGACAGGGAATAATATTAACACTCAATTTTCACATGCTGTAAAGGGACTCCTATTCTCTGTCACCCTCTATTACCCATGTATTCCAAGACTCTGCATTGTTTGAATCAGGCCTTGAAGCTTTTTGGAAGAGCAGGGGTCCTCACAGTCCCTTGTTCAAGGGTGTGGCAGAG----ATCTTCATCCTCTGTACCATGAATCTTTGCCTATAT-TTGTGCCCAAAGGTCTGAAAATACATGAGCACATGGAGAAAATTAGAGGGACTTTACTGATCAACCGATAATTCATT--AGTTTGTAATTGACTGTCATCTCCTGTTCCCTCAGATATCTGAGTTAAGAATCTTTCAG-TGTATTTTGTTTATTAATATGCCATTGTTATACTTTTATAATAGAATATGCATATTATTAACTTTATCACATAGAAACAGGAAAAACAGAATTGGGAAAA-------AGATCAGAAATAGGAATCAa---------------------atgaat----ttgagttagccattccatgatatatatatgtatcaaaatttcatagtttagaacaggaataaacttaatttttagtttttcaactaaaaa---aaTAAGCTAATGTAG---AAACTTCCACCATCAAAGTGTAAGATGTTTTCTAACttattttatttatctaaaaaaaaacaaataaattatCTAACTTTTGATTACAAAAGTAATCC---TTATTTAGAACATTTGTAAGATATAAACATCAACAGAGAGAAGTGATCTTTAAGCCTAGATTACATTAGTAATATTTTATAATTACTTAGAATATATAAATATGCGTATTTATATATTGAATTACATATATAATTCCATCTTTATTCTTTTAGGGCATATTTTTTCATTAAACAATACTATGTCATGTTTTCTGTAGTTTTTTTTAATG-----GCCAAACACTA-TTGCATTCTACAAATAAGGTATTTAATCAATGCTGTACTAGTACTTTATGTGATTACTTTCCCC-----CTACTGTGCTGCAA-ACTTTCTCTAATAAAGAAACATCAATTGTTTTC---TTCACCTTTTTTCTTTATCTTTATTTCACTTATTTATTTGTGTGCATTTATTTGTGTGCGTGAACATATATACAGAAGTCAGAAAAGAGCTTTGGGGAAGTGGTTCTCTCTTCTCTtttgaactaa-ggtcttcat-gcttgccagcaggcacttttaccttttgagtcatcatcagacccTCAAC---TGTTTGTTTGTTTTTAATGGCAATTTCCTAGGAGCAGGTACTAATATCAG--TCAGTATACATATATCCCGTTTTGTGT-TCCAGCAAAGGCag----tgcggaatcagaatcattccacgtagaattggattccacctctgccacctgctggctgccacctgctggcttagagctgtctcagcgtgaggaatttctccctggtgaatgtggcgtgacaacagctcttcctttacttggttgctatgaaacacaagggggttaacttctgataaatacttaggtcaactggcagtgctctgacccatagcaagcT-AAATCCCTGGGCTATCATCATCGTTATTGTTGCTGTTATCCTTGcaaatgtgtcctcctaaaagaatgtcccagtttagactcccacaagcattgtataagagtattatttccaaatgcctt-gtcaacaccttttattgt----------gctgcttgtcaactggataaagccagattgttgctttagtatatttttttttctgattactaatgatgaacagtttttgcatctttattggTATT----AATTT----------TTACATTTATGA---------------ATTTTCACTCACAACTTTTTCTTGCTTCTCATTTATTATTTTCTTTGATACA----CTAAGGATACCATTCTCTTGCTTGTCCTGTGTTGTAAATATTTTTTTTTCCTGAGATTTTTTTTTTAAATATGT
s HiC_scaffold_1 137601076 3253 - 233722169 AAGTATGATTATATCTCAACTTTACAAGGTAAGTTTTTTCTCCAAATACTGCCATTCTAAGGAAGAGCCAAAGGGCTTTCAGGTCAGCACAGTCCTTCTG-------AGACAGCACGATCAGGATGAATTGGTACTGGCAGATGCTGGTAGAGTTCTTGGGAAGGACAGAAGGTGGATCTTGATAAGGATGCTTGAGCTTG----GTTCCATGGGCCTGTCTGACCATGTCA-----------------------TGAATACCTTAGCTCTGACCAGATGTCTCAGAGTTATTTCCTGTAATTCTTAAAATAACTTACGAATTTGGTACTGTGGTCACTCCCATTCTCCAGCTGAGTA-----AATAAGCACTCTGAGGTACTGGAACACATAGTGTATAC--GTGGCTCCAGGGCTCTTTTGCCATACTGCAGTTGTCTTCAGAAGGCAGAGAGAAGTGAGACCCAAGTTCCTCATGCCATAGTGGGGTATTACTTTGCACAGTTGTGGAAAGCAGAGCCTTCAGTCAGCATATGTTTGCTTTATGCTCAGGGAAGTCTCATTCTCTGGTC------CCCATTATACCTA-----GGCCTGAGGGATGAGCAGGTGTTCTT--------------------------------------------------TTGACCTATCCTTCAGGGTGGATGGC----CTCAATTGTTGAGGCCTCTGGCAAGGTTTGCAGAGGCACTAGTGACTTCCTGCTTGCATCACAAGGGAAAGGCTAGGTCAGCA-------------CATATTCTGCAGAAAC-TGCTCCCTCCCAGGACAGACCTGATGTTACCTCTGGAACTCAGCAGGGCAGTTTGGCAACCCAGCCCCTTC-AGGTGCTGCGTTTCTTGTTCTTtctgacaagaaaaaagaatttcttaACTGCTTACTTGTAAGAATAAGTGGATGAAGGGGGCTATGATATAATAAGGTATAGCCCCATCTGACCCTGCACAAGTTCCTGCCACATCAAGCCCTTGGCTCTTGGGAACTTTGAGCCATCTGGAACTTGTGAGTTCAGGAGGTTGGGTTACCTGAGGGTTCCCGAAATCCACATTTAAATGTGT---------TGATTCTTCAAAGA-----ATTTGGTTCTTTTCATGGGTCAGTTACTT----------TATCATGAGGACCTGGTGTTATCTCAACAGTA-------TGAGAAAGTGTTAATGCCTCTGTTTTACAGGTAGAAATCTGTGATATCT-TTGTCATTCATGTCCATTTGATGCCATGTTTACTGTTACTCAGTGGGCACCAACAGAC--ACTGCTCTGGACGTGTCAGAAGGCGCTGTTACTCCAGACTTTGATGCTGTTCCTGGCATGAAGTTGGATAATGGGCATGAATGCATTTGTTAGACTAT-AAGTGCTGCACTATCA-TAGAGACTAACTATGCAACAGGAGTAAAGGCTCAGTATACTGCAAAAGTTGAGTAACACTGCCCCATGTGGATGAGAAAACTAAGACCTGTATGTTGTGATTATTGTCTATTGTGATAACAGATTACTTTTCAGCTAGGTTGTAGGTGGTCTCACCTGTCAAGGAGCGCAAGATGCTCTTAAGATCAAACAAT--ATAGTACTGATGCCCAACTTTCATGTGCTTTGAGGGGGTTCC--CTTCCCATCACTCACTGCTGCAGACATATTCTAGCCCCTTCCCCAGT--------GACC----AGCCTGTTAG---------------------CCTTCATCCTGGGCTGGGCCAAGGGAGCATTCTCATGGTCCA------GGATCGCTGTTTGTCTATTGTACTCAAAGG-CTGACA-------AGCACA---AATATATTGGAAGGAATTCATCAATTAACTCTTAAGTAATTTAAATTTATGATGAGCTCTCACCTCCAGTTCCCTCAAATGGCCAAATCAAGAATCTTTGAGTTATATTTCATTTA-------------GTTAGTTGATTAGCAAAGAATATGTATGTTACAAAGCATATT---------CAG--AAATCAGAGCTAAGGAAAGGCTGATAGATCAAACATGAGAATCAaaaggctgtttttttttaacatataaattaCCTTGTTTTAAACATTCTACAAAGTATACATGTACCAAAGCATCATATTTTATACTTCCCATATGCATAGATTTtg---tcaaaagtaaaaatagagtAAGATAACgcaggaaaaagttttaaaatgtccatatgataagtttt---actttttttttctttc-agcagtgAACAAA----------ACCTTTTGATTCTAAAAGCAATGCAGTATACTAGGCATGGTAGTAA---------ATGGCCAGAAAGATTGTAAGTTTGATTTCAGCTT---TGGGTAACTTTAGAGGATCCtgttgcaaaattaaaaataaaggctgaga-------------atatagttcagt--------------ggtagagcccttgcttAGCCTACATCaagccctggatt---taatctctaGGAACGCTCTCCCCATGCactgtttgcag--tacatagaaAGCGTC--AACAATAACAGATAAGTAATATGTATTCCTGGTTGACACTGATATTATTGTAGAGcaataattccttt------------tttattattttagagcCTACCTTTTTTACTTA---ATATGTCATTATTTTCCACAGTTGCTTTTA-----GTGATTGAATAT---TCCATTAAT-AGATAA----TTATGGATATTATCTATTTAATCAGTTTCCTGCTAatagtttttataatttataattttgtacTTCTATAAATT--GTTGCAATAAATACCTTTATacatctctttttgttttt-atggtaatTTCCTAGAAATGGG----ATTCCCAGGTTCACAATGCATCTCTCATGTCTTCTGTATGCATAAAAGACAAAGGCTGTGGA------------TCTCTTAGGATTAAATACAACTT-----GATTATTGGCCAACAACAGTT--TTGGAAAATTTCTTAGCACAATGATTTCTTCTCTGGTGAATATAG-ATG-CAGTAACTCCTTC-TTATAGTGTTGCTATGAGATGCAGGTAGCTTAATATATGGTAAGTGCATAGCTT--------GTAGCCTGACCCACAGTGAGCTCAGATCTCCTGgctattatcatc---atcattgcTGTTATTGTTACCAGTGTGTTCTC---AAAGAGTGTCCCAGTTTAGACTCCCACAGGCATCCTATGAGAGTGATCTTTCCACATGCCTTGGTCAACACTGAATATTATCATTCCTTTGGTTGTTTGCCAACCTGAC-ACTCcaaatttttgctttaat---tttacttctttgattACTAGTGATGAACC-TTTTGACATCTTTATAGGTATTTCTGTATTTATCTGTTGAGTTCCATTTATGACAGAAAATTCCATATATTGTTTCTGATGAATTGTTCCatcttttttcctattaacttctttAATGTATGTGTTAAAGATATTATTCTCTTGCTGATCATGTGTTGTAAATGTGTTTTCCC-----AATTTTTCTGTGTAATCTGT

a score=30535
s chr3            92111827 1662 + 160039680 GAGTGATATTTTAACATAACTTGAAGCTGTGG-ATAGA--------------------ATAGTTAGTAATACCTATC----TTTATCTTTAGCAGCATCTGGAG--ATGCACATACTGAAGGGTATCTGTCAGCTGGAGGGTCTAGCCAAAATATTGATAATTATCAGCTGGTTCTAATTGTTGCCTCTCATCTGACCCTTTCTTTAAAAATGTTAGAAGATCCTTGTGAAAACCTCCTCTTC----------GTTCAGCCCTTTCCATGAGTCAGCCCTACTGATCC-ACCAACT---------GTTTTACCCC-------------TAGTCTGAGAGGTTGGGGGTAGGATTGGAAA------GTGTGGTGACTTCCTTAAGTCTTTTCCAGGACTGTGTGAACATGGGACAAGTCCATATCCCTAGTCCCTCCCTTCCCAGTCACTGTGCCACTGAACCCAAAATTTCTGCATTTGAAATTGGGTCAAGATAATTTTGGGTGATAGTTTTGG-GCAATAGATAAGTTAAGCTGCAAGAATCTAAGTACTAGAGT-CCAGACTCAATATTTTGACCCTACTTTTAGCTCCAGCCGAGTGTCA-----ATAACTAGAAAAATGCACTTGTCAT-TTAAGGACTGAGCTCTTAATTTCAGTGTGGACTAATGCACCAGTATTTTTCTTTTGTTTACAT-TTTATGCAAT------TAAAAAATAAAGTTTAAAATGAGTGATCGTGAGTGTGTGTGGTATAGATGACACCAAGTCTTGTGTGGGTGTTAGTATTTTGGAGGTCTTATGAGT-TGGACCTTTTCCTTGCTCCTCAAA-----GAGGATCTTAGGGGCAGTTTTGTGTCTATCCATCTTGTAGAGGGCAAGAATAACTTCATCTTTATCTTGAAACCTCCCTGAGCTTAGTTATGTCCCATTTTCCAGCACTGGAGAGAGTTCACTGATGGTAATCACTCAGTCACTCAGATAGGGGCTTGATTCGACAT-AGATGAAATCTGTGGCCAGCACATTCTACCTTCTTGGCCTGATT---------------CATGGAGGCC------------------------------------------------------------------------AAAGAAACTTGG---------------TCATTGTACTGGCTCTGAGTGCACTTACACATGCTTGTGGCACATGTTGTGCAAAAATGTTGTGGGCAATCATCATGTGGGTGAAATTCT-ACAGAATAATATGGAAGAGTT----GCGTCCTCTTCCAGACGAACTCAGTAGAGGCACAGAGGCAGATATGAGTTCAATGAACTAGGAGGAGTAGCCACATATGGAATCCTCCCTGACCTAAAGAGCATTTGCCATTTGGACCTGATTCAAACATTTGCACTTGATTCAGCTTCTGTGGCATTAAAGGCTCAGGTGTGGCTACTTTTGTAACTGGGGCACGGTGCTCATCTGAGTAGTCCGGTTCCACCCATAGAAGCCTTATAAATGGAAATCTGGGCTTCTGCATTGGCTTCTTTGCTGGTGTTGGGAAGCATATGCTT-GACCTTGCTTTTCCCCCACCAGTGTACCCACACCCAGAATTCTGTAGCAAGACATCCTTCATTACAACCTCTTATGAACTCAGGTGAGTCC------AGGTTGTCTCAAGGTAGCAAACCAGTCATAGTGAATCCAGATATTCCCTCAGCCGCTCTCTATAGATCCTCAGTCTACTCTGTCCTAATCTGTCTCCTGAGCTGCCACTTAAAACTTCCTGGTCAAGCTGCATTTACTGTCCTATTAGAATTGCTTAAGTCTATTGGTCATCCTTTG
s HiC_scaffold_1 137608207 1757 - 233722169 GAGTGATGATTTGATTTAATAGGAAGCTGAAGCATAGAGACCTTTTAAACTACTTGCCATAAGCAATGAGACCCATCCACCTTTAACTTTGGCAATATCTGAGGCCATGGACCC-CTAAAAGGGATTTGTCATCTGGAGATTCTAGCAGAAGTAGTGATAATT--------GTACTCCTCACTGCATTACATCTGACTCCTCCTCCCAGCCTGTCAAAAACACCTTACACAATTGTCCTCTTTCAATGCATAGGGGGAACTCTGTCTATGAGTCATTTCCACTAAGCCTAGCATCCCTTAGATAGGTGTTACCTTACAAGTGTCACTTGAGTCCCTAGAGCTGGAGGCAGGGGTGGGGACCTGGTGTGGGGTCACTTGATGAGGGCTTTTC-AGGGGTGTTTTAACACAGCACTGGCTCACATTCTGAGG----------------ATTTGGCAACTATATCC-------TTGCTTTTGAAAATGGATTAAGGAAAATGTGGGTGATGGTTTTAGTGGAATACATA--TTAAACTGCAAATATGTAGGGACTGGACTGTCAGGATCATTGTTTTAGTTCTGTTTTTAGCCTTAGTTAGACATCAGTTATATGACTGGAAAAATGCACTTGCTATACTTTGGACAGAACTTAT----TAAATGtgaat---------aagattttttttaaatttcagtatttatacagtacattttaaaagtcaaagtcTGACAAACCTGAGGTCAAAGGTGTGATGTAtttatactctcagactttatG-AGATCTTAGCATCAGGGATTATTGACCAGTAGGGAACATTTCCTTGCCCCTCAAATGGGGGATGATCTT-GGGCCAGGACTGGGTCTCTACACTCCCTCAGTGGTAA-ACTGCCTTCCTCTTCATCTTAGAGTCTCCCTGAGGTTAGCTATGTCCTTTCTTCA-----TGGCAGGGGTCCTTTGAAGATTAATGCTGAACTA-TGGGTTGGGGGCTTCTTCCAGGGTCAGATGAAATC-----CAAGGACATTTAAACTTCATAGAAAGGTTGCTATGACAACCAAACATGGTGGCCTTGTAGCATCAAAGGGCTGAATTTTTGCCTCTAGCTGACATAGTTTGTGCTTCTGGTCAGGCGCAAGTGGAGAAGAAATCATGGCCCTAGTACCAGAAGTCATTGTATTGGCCTTGTATATGTGTGC----GCCTACAATATATGGTATGAGAGATTGCTATGTACAGATTTCATGTG--TGAAACTCTTAAAGAGTAAGGTCAAGTAGTTAGTTGCATTTTCATCTGGTAGGATATAGTGGGGGCTGAGAGGTGGAGGTGAGTCAAACAAGCTCTATGGTGCCACTCTACATAGAATTTGACTTGGACTGAAACAGGTTTACCATTTGGGTGTGATTTGGCC-----------------------TTGCATTAAAGGCTCAGGCACGACTGCCTCTGCAACTGGGGCATGGTATTTGCATGAATAGTTCAGGTCCACCCATGGACGCCCTATAAATGAAAGCCTGGACTTCTGCATTGGT-------------TTGGGATGCAGCTGCCCAGATACAACTCTT--ACCGTTGATCTGCTCATATCCAGAGCCCTGCAGCCAGGCATCTTTCACTGAGGCCTTTCCTGTTCCTCAGTAGGTCTGGTCTAGGATTTTCTCTAAATAGCAAACTAATGCAAGTGAATTCAGAAAACCCCTTGGTACCTCCCTGTAGATCTTCAGTGCACTCCATTTTGTTTTGGCT-CTGAGCCACCACTCAAACTACTCTCCTCACACTGTGTTGCTTGACCTACTAGTATTGTTTGACTCCATTGATTCTCCTTTG

a score=109175
s chr3            92118084 6895 + 160039680 [encoded data, 7658 characters]
s HiC_scaffold_1 137617933 6810 - 233722169 [encoded data, 7658 characters]

a score=39562
s chr3            92127990 1953 + 160039680 taagacaCATATGTGACTTCTAACTTCAAGTGGTACAATGCATTTTTTGGGCTTTTTTTTTTTTTTTTCTAAATTTGTGGTAAGTTGTGTTAGAAGTTCTGAGAAACTACTACTCCTCAATATCTGAAGCTCTTGGAATCTTTGAAGGACTAAAGTCTCAGAAGAAACAATGGAATCTTCTTTTCA--TTCCTTTGCTTAAGAAGATCCATGTATTTGTTATAGCAACACAATCAAGACCTGCTTTTACATTTAT-------GGCTCAGACATTCATGGAACAA---CTAAACTTAGGGTTCAGAACTGACTCTACCACATAAATC-----CAGTGATGGATTAGTGGCACCCCCTTAGACATTTAATCTCTTTTTGTGTGTGTGTGAGGTCAAACTACTATTCCATAAATTACTTTTGAGAAT-----AATTCAGAGTAT----ACAGTACCACT-----------AGATACCCTTATACTACTTTTGTG-GGTCTATATTGGTCCAGGACTCCCTTTTTTCATTGATCTTTCCTTGATTTTCCCAGTTCTTTGTTCTATG------TCCTTTATTATGATTCCCCAACATTTGGCC-----CTTTCCTTTCTTATTCACTGTGATAAATGGATGATGTACTTTACAGGACCTTAGGATAC-TGGTTCTGTTCCTAAAATAGTCTg---------accagccacctgctcctctctggcc----tccaactatcattaggaggg------taggattttagtagagtccattccagatttcacattctgtgacactataaATGTGA--AAAGGAACAGTAAACCAGAGTATTTCTGTGTCTTTCTAAATTTTTGGTCATGTGTGCGTTTGTGTCCT-TCTGTTTGCTTAG-------------------AAAATTCTTTCTTCTGTCCTCTGCATGTAACAGAGGCTGAAAGATTGAATA--TAAGTAACATTAGATGGTCTATCTGTTTTTTGGTGAAAAGTGGGAG-ATCTGGGTAGCCTAAGTCTTTCAAAATCTAACCTTAGTGGACCATATAGTTGGCAATGAGGCTTGGACATCTTTGGGGAGACTGTCACACTCCAAAT-----CTTAAGATGAC--------TAATTTCCCTTACTATGTTCAGTCTTCTAGTAAGACTAGTGCTAATCTGATTTTAAG------GGTATCTAAGAATCTAGACTTCTGGGGCTGTTATTATTGGGAGCCGGGATGTAATTAGA-----CAGAAGAGACTCAGGTATATGCAGAACATTGT-TTTTCCTCCATTCCCATCAAATAACAATCTCCTTTGAGTAGATCATAAAAGTTCCCAGACTCCTTTGATTCATTAACCTGTAGATTACAGGGCAATGGGT-CTGATAACACTGAAAAGTACAGAATGTGGCTCATCCTGTTTCCTGGTGGGTAGGTACCTCTGGAGTTTACTGGGCTTGTGAATTCCTTTTGGAGAGAGCACTGTTCTTTTCTTCCCTTCTTCTTGTGTCACCCACATAGGGAGTCTGAATCAGACAGGCCAAAGGTGTGGATCACAAGCCCAGAGGGACACAGGAAGCCACCTGATTCTACTTCCTTATTTTATCCTTAGC-ATGTGATTTTAACAGGCAACATAGACCTACCTATCAACTGTGATTGCTAGATGATAAGAGAGGAATAAACAAATTT--GGGCTTTGTTCAAGGTCATATGA------TGAGTTCCCATCTTT------TGTAATGAACATGGAAAAAC-------AGACTATTTGTATTAGAGATTCTTCACAAGTTTCAAGAAAATAGCAAGTGTGTATACCAGCCTGTGGTTTTTAACAGCTTTTGTATATGAGAGAATATT--CAAATGTATATGCCTTTTTCTTCAA-----GAAGAACC-----TCAAGACAAGAGACACTGACAGACACTAGGAGAAATGATGTCCTCAAACTGTTTAAACTTGTTTAAAGGTGGTCTTTCACCTTTTCCATTTTGAGTCT-GAGTCTTG--TCTCCTGGAGCCCTAAATCAGAGTTAGA--------AATCTTCTGACAAACAACTAA--GTCACAGAAGGTTTTTTATTTGGTTGTTT
s HiC_scaffold_1 137626513 2012 - 233722169 TAAGACTTGTCGTAGACTTCTGGCCTCGAGAACTATAACACACTTTTTTG-----TTACTTTAAGCCACAAAATTTGTGGT----TACAATAGCAGT---AAGCTGATACACCTCCACAGTATCTGGGACTCTTGGGAAATCTGGAGGAGGGAAATCTCAAATGAAGCAGTAAACTCTCCTCTTAGGGTTCCTGCATTTAAGTAGATTCCT--ACTTGT--------CCATGTCAGGACC--CTTAAACACTGAGTAAAGGAGACACAGCGATGCGTGGAAAAAGAACTGAATTCAGGCTTCAGCACTGAGTCTATTATGTGGACCATGTGCAATATTAGATAAGTGGCAGCCTCTCACA-ATCtcggtttttttcttttttgagaaagttGAA--TACAGTTTCAAAAATT---TATGAGGATTAATTAATGTAGGGAATCTAAACACTAACACTTAGGGCAACTGAGCTAC--TTACAGAAGTTTGGTGCAATCTGAATCAGTTTGGGACTCA-TTTCATCACAAagctttctgtgatttt------ttttctccctatgGCAGAGTCCTCTACTGT--------ACCATTTgttttttgactttatttttctgttcactGTGATCAATAGACAATGTACTCCTCAGAGGCC-AGGGTACGTGGCTCAGGCCCTAACAAAGTGTATGACTTCATACTATTC-CCAGATCTTCTCTAGCcacattttcatcatcattaaaACAGGAGAATTAGGCCTTCAGTAGGGTCTGTTG-GGCTCTCAAATCCTGTTGCATTATAAATGCGATCATAAGTATGATTTCCCTAGGTATCTATGCAACCTTGTAAGTGT--GGCTATCTGTGTGTGGAGGTGCTGCCTCTTTGATTAGTTTGTAATAGGCCCATAGAAAGACCCAATCTCCTGTCCTCCTCAATTGGCATTGACCCAT---TTGGGCAGCTGAGTGAATTTAGGT-----CTTTACTTACATGTACAGGGTGAGAGTATTTGGG--GTTTGAGCTCCTCATGAATCATCTTCATTGGACTA-GTCACTGGGACTTATAGTTGCATAGTTTTAGGGAGATAGTGCTACTCCACATTGAGACTACAGATGACAAGATTAATAGGTTTGGTAACTGTCACCAACCCTCCAGCAAGATTGGGGCTAATCTGATTCCATGTCATCTGACATTTCAGATTTTGAACTACTGAAGCTATTATTATTGAGAACCAGAGCATAATGAGGGTCAGCAGAAGAGACAGAGGTGTGTGCTGGACATTCCAGTTGCCCTCATTCCCATCAAATAACTATCTCCTGCGTTCAGATAATAATATTTTTCAGAGTCCTCTGATTCATTCATCTGCATATTACAGGGCAGTGGATCCCGATAAAGCTGAAAAGTACAGCTTGTGGCTCATCCCTTTTCCTGTGGAGTACCTGTCTCTGGAGTTTATTAAGCTTGTAAATTCCTGAGGGAGAGTCCAtcattcctttcccttcctttctcagtGACA-------AAGGAGTCTGAATCA---AAGACTTGGGAATGGCCCTTGGGGTACAAGGGACATGAGAGGACACCTAATTCCACTTCCTCCCTTTAGCCCCAGCGATATGTTTTAAACAGGAGGCACACAAGTACTTATTGACTAC-ATTTTTGGA--ACAAAGAAAGGAGAGACAAGTGTTAGGTCATTGTTCAAGGTCAGCTTATACAAGTGAGCTTGTGTCTATATGagctataaaacatttaaagaaacatttagaAAGCTA-CTATATTAGAGATTCTTTATAAGTTTCAGGAAGATAGGATAC---CAGGCCAGTCGGTGGTTCTAAACAG-TTTTGGAGACGTgagaatatttacatatacatacgCCTTCATGTTCAGGGGTTGGGGAACCCATGTTATAGACCACATACACAGAC-------AGGAAAAAAGCTGTTCCTGAATTGTTGAAGTTTGCT----GGTGGTTTTCCAACTACCCTCTTTTGAATGTGGAGTCTTGCTCTTCCTGG---CCTAAACTGGGGTTGGAAAGCCTCGAATCTTCTCATAAGCAACTCACGGTGAC-------------TTTGGTTGTTT

a score=18415
s chr3            92130154 773 + 160039680 CTGGATTTTCAAAGCAAGCCAGTGCAAGAGA-TTTGTGGTGCCA--CCTGTTTTGTGAGTCTATGAACGGACCCTTAGAACTGCTTTGCCAGGCAGGAAGAGTGCTGGCCCCACCCACTTCATTT-TCTGT-AAGCATCTGTCTGGTACTACACCGATTCTGGTGACCTCACTCTGAGGGCGTTGCTTATTTGTACAACCCTCCACCATTTAAGGCAGAGTCTTCATGATTGCCATGGGAGCTGGGAGTAATTACAGCATTCTGTGGAAAGCTGGCATCCTCATCACATTCTGGTCTTCTTCCCCAGAACTGCCTTTGATCTATCTCTCTGGTGGGAAGGTAACCATTAA--GATGTCTATCTTCAGTTTCATTTACATCGAAGGAACGA----CATACTAGCAATAGATGTTTTCATGTTCTCAGATCTGGTCTTCTCCTAGACTGTACTTGGGGTTCT-AGAAACACTTGGCATATTTTCTAATGGCA-----CCACTTGGAA------------GGCCATGCA---------CTCAAAGTGAAGTTTGTTCTATACTGTTCACATGCC----------CTTCAAAGGTCTATTAGACACTCTGGC--AGTCCTTGGATTATTGACAATTATTTCATGATTATTTCTTTCTACTCTATTATAAAATGAATAAATAAATGCATGCTAAGTAAAATTCAGAAAGTGAAGGTATAGTTATTTATAACCACATTTTACTAGAACAGGGAGGACATGAACACATTTTCTTCTATTA-TTATTCATAGTAGTTTTGTGTTGAAAGTACTTCTTCAGCAGCACCCACCC
s HiC_scaffold_1 137630648 796 - 233722169 CTAAATTTTTGAGAAAGGACATTACAAGGGAATCGGTGGTGAGGGTCTCCCTTTGTGACTCTGTTAGTGGACCCCCAAAACTGTTTAGCCTTGAAATAAGAGGGAttgtcttcctcttctccttaaTCTGTGAATCATCAGGTCTGTGCTGTACAG--TCTAGTGATGTCACACTTTGAATGTTCCTTATTTATTCA-TCCTCGACCCTTTGGGGCCCAGCTCTGGTGACTACCCTGGGA-CTGGAAGTAATTATAGCCTTCTGTGGAGAGA-GTCACTCTCATCACATTCTAGCTATCTTCCCCAGAACTCCCTTTGATCAAGCTCTTTGCTGGAAAAGCAGCTATTAAGcgatgtctatctttggtttcaTCTA-ATCAGAGAAATGATAACTAAATTGGTAGTGGATGCGTTCATGTTCTCAGAG-TGGCCTCCTCCTAATCTGTGGT--GAGTTCTCAGGGACAC-AGTCCCAGTCCCAGCTGTCACAGAGCTACCTGGGGACCTTAGTCTTTGGTCCTACATGAGGATGCTCCCAGGTGGAGTGCCTTTTACATGAGTCATATCCCCTGAGATGTTCTTCCAGAGTCTCCCAGAAACTTTGGTGAGGTCCAAGAAGTGTTCATAattatttcac-attatttattt---ttctgttacaaaatg----aataaaagcatatTAATGAAA--CCAGTGGAAAAAATACTAGTTATCAATCATCCCATTATGGTAAAAT----AGAATATCCACAAAT----TTCTATTAGCTATTCATTGAAGCTTTTGGTTACAGATAATTGTTTTGTGCCACACACTC

a score=13312
s chr3            92132498 2600 + 160039680 acaCCACCACTAATTTACAGCTTCTGCCTTTCTTCAGT-----------GGGGTGAATAGTGCTCCAAG---TAACAAGTATA----AATTTAATCAAATCTTGTTATTTAC--AGGTTTTCTAACTTAAACTGTGATAATTGCCTTTATTTATATTGCTTCCATTCCTACC--TCCATAGATA----------------------------CTTTGCTTAATTCTTCTGAACTGAATCCACTGGGACAAATTGTTGAGGCATTTCTTGCTTTTGCCATA--------GGTTTGCAAAATTGTTTTTTTAAAA-CAATG--------------GTCAA--TAACACCACCATTTTTTTAAACACTGGGTTCTAGGGATTTGTTATTTTA--GTGACAATTTAG--ATACAAT-------TCATTCTATATTCTGTC-----------TTTCCTCTTCTCTTTGCTTTGTCTCACTCTATCCTGT----------------------------------------------------------CTTCCTCCCCCTTCCCTGTTTTGATTGCCTCTGAGGTGAGATGTTTTTCCTTCTGTTATCCACAGTTGGTCACAGGCCTCCCTAGAACCTAACAAGGGTCTCCAAAAGTTTCTGATATTCAACAGACA-----GCTTTCTGTACAGGTGTGGGACCATGGGAATTAGACTCTGAGACT-CAGGCCATCTTCAGGTCAGAGAAAGTTAACTATGAGACTTCAGATCTGGAAACTGAGA--GAACAGTTCCCTGAAGTCCTTGTCTAGCTTTGCTTCCTA------------TATAA-----TGAGTATGTGGCTTCAATCAGGA-GTTGTCCCTTGTTCCTTTT-TTAGGAACTTTTTGTAGTATCTGTATTTGCC-----TTTCACTGTTATGAACCATTTTCTCAATGTCTTTACAAGGACTGGGAGGTAT----TAGCATGCTTAGAGTCCATGGATAGCCATTCTTGGGTTAGCCTCTTTCATGA--TCTTACTGGTACTGCCAAGAATCTCAAAAATATTTCCACTTAAATATTGCCGACTATTATAATGCACAGGTAGTTTGACCTGTGTGACAAAGCTGTCAGATGTCTGGCTACAGGAGTAAGCTCATGACCTTTTAGGAAAACAGGAGATAAGAGTAGATAAGATGAGCATCCTGACCATTCACAAACTTGACCTGTGGACCTGGCCACAAGAATGCACAGAGAGAATTGGATACATGCTGAGGAaggaggaggaggagagaaaaggggagaagcagaagaggaggaagaggaggaTACTTAAAGTTGTGGATGAGGCCATCCATATACATGAGCTCTGAGGTTCTTGTTTGCTATAGTTCTCTTTAATTCTACATCCCACTCCAATCCATCTCAGCAATATGAGCCAACACATTCCTTCTTGTGCATTTATTTGGTTTGTTCTGGACT--AACTCCTTGTAAA------ATTCTTACTTATCAGTTGTGAATGCCTTA----------CCTAACTGGGGTCCTCCCACATACATATCTAGTTTTTGTACTTCAGTTTTAATTCTGAAATATTATAGATTCACATAAATTTGGAAAATGAGAGGATCCATATATTCTTTATTTTGGATTCTTGAAGTGTCAACATGTTATTGAATTTTAATATCAAAGTGAGATAGTTGATACAACC----CTCAATCCCTTTTTATTTTAATAATATCTACCTCTGTGCCTGTAGGGGCACAGAAGAACAAGAACACTGTTCTCAGAAGATTTAGTCTACTCAG-AGGAGAGGTGTGGAACAGTAGAACTCAGATATGAACATACTTcagtaattctcagccttcctaatgctgggaccctttaatacagtt-catgtgtagtgatctccaaccataaaattatttcattgctacttcataactagaatttttctactgttctgaatcataatgtaaatatccgatattcggatgtctgatatggtccctaaaggattgAGAATCACTAGTCTACTGTGTTCCAGTACCT--GATATTGGTCTCTTCCTA--TTCCAAGTCTTACAGTAGTACTGTCACAGCAGTAATGTTTGtatcatcttccctatgatgcagtgaaggaaactgaggcatgataaa--taagtaactgatgtaaa----gttacaATGTTGTTTCCAGGTATATCTAGATcagtggttctcaaccctcctaatgttgtgaccctttaaaatagttcttcatgttttggtgaccccaactataaaattatcatgttgctactttgtaattgtagtgactcttaatataaatatatgatgtgcatgaaatctgatatgtgacccctaaaaggatcgaaatccagaggttgagaaccactgAACTACAGTGTAAACCCAGGCAGCGTGTtctctctgtctctctctccctctctctctctctctccctcCCCCCACCCCCGCTTTGTTTCCTAAGTTACAT--AATTTACCAAATACAAACATATTTAAGAATCACTCATACATTGCTCTAGCAGGG-CTTGG------------CATTCTCT-GGAAAGGCA--CCTTCCCTAAGT----------GACAAAGTGACAGGCAGAGCTGTGGGGTCCTCA------GAGATCT-----------CTCAGTGCC-AGGGATTGCTTCCTAGC---CTAGTACTGTATAACAAGCACCACGAAATAAAGCCTCTCCTTCAAGGTAACAG-AAGTCTTGCACAGCAGAGGAACATGTTTACTTGTCAGTTCATGGTTTCACTTCCAGCCCCACAATGTTGTAGGTGGTAATGG-AGGCCAGTGGTGGCAAGGTTGGTGTC
s HiC_scaffold_1 137631511 2320 - 233722169 ACTccatcactgagccacatccttacCCCCTCTTTAGTACATTTTATATGAGTTGTGTAATGTTGCATGGACTAATAGGCCTATGTTCATTTAATCAAGCATTGttagatatttgaatttttaaagttatactatgatca---catttatttatatagcat---ttcctaccattttgtaattatttttcttctcagtttgcaattatttttctttgcttaaatTCTATAAAGTAAATCCATTGAGTCAAAATATTGAATCATTA--TGCCTTTGATATACATTCTTATGTTGGCCAAATTATTTCCTAAAAAGCTATGTAGGAAGATATTTAGTCCACTTAACAGTGCCATAATTTTTTACCCTGGAGTTCTGGGACTTATTATTTGAAAGTGGTAATTTAACAGAGCAATAGGGATGTCACATTATTTTCtaccccttcctttctttccctcctttatttattttatttttttattccctGTGCTGGGTCTAACCCAAGGGTTTGTGCATGTCAAGCATCTGCTCTATGATAACCTACACCTtcagcatttttcttctttctgatccTCTGTGAGGTAGGAAGGTTTTCTTCTTGTCATCTGCAGTCCACCACAG-----------CTCTAACATGAGATTCTAGTGGTTCTTGGCCTCTGGCAGGCAATTCAGTCTCTCATTCTTGCCTGG-------------AGACCCTGAGATTTCAAGACATCTTCATATAAGAGACG--TAACCACTaattttcacatttgaaaaatgaGGTGGAATG-----CTAAAGTCATTGTGTTGCTCTGTGTTCTAAAGATCTACATCTGTAACTAGCTGATAACATGGTCTGGGTCAGAAAGGAGTCCCTGGAATCTTTTATTTGGCATAGTTTGGA----CTCTGCTTGCCACAGGGTTTCCTGCT-TAAACCATTCTCT--------------AGACTCGGGAAGATGATGTACCATGATT--------TGGAGAACTATCCC-AGATTGACCTTTTTTACAACCTCTTATTCTGACTGTAGAGAATGCTAAACCTATTTTCATTTAAATCCTGCGGACTGTAATAGTCCATTGCTCATTTGTGCT---------------CATCTGTTTGCCCAAAGGGGTGGACACATGACCTTCCAGGCCACCA----------------------------CTGTCCTTTTCTGGAAACAACCCGAGTACCTT--------CATACCCAG-------TTTGTGCATAGTAGGGACGTTAGGAGAGGATGGGATATATGTGAGACGGCCGAGTGAGACTAACA-------------TGTTGA-GCgcctgtctgtgccctcagcctctgaagtgcttcATTGCTGCTGcagttttctcttctgtgtttcaCTTTCATAC-CCTCAGCAACATAAGCCACTAAATTCCCTTTTGTGAATTAAGCCAGTCAGACATGGACTGCAGCTCTTTGCAAATGACCTCTACTAACATGTCAGCTGGGAATGTCTTCTCTGTTTATTCCTAATTGGGATGCTCCTATATGCAGATCTGGTTTCT------------TAtatctaaggt-------------------------------------------ttttttttttt---tttttgaaac---------------------aatatcaAAACCAAGGGACTGACccaattttttctattttcttttcttttttaagaatgtgTA--GCTGAGTCTAGTGGG------------------ATTTGTTACAGCCTGTCCAGCCTGCTCAGCAGGAGAAGTGCAGAGCAATTAAGTTCAGATGTGTGCGTGTT--------------------------------------AGACAATGGCAAGTGTAG----------------GATTACTCCCTT------------------------------------------------CACCCAACACCC-------------------------------------------ACTATTTTCTAGTACCTTGGACCCTAGGCATTTACTGATTTCTGAGTCTCAGAATAGTGCTGTAAC--------------------------TTTGGCAGAAAGaaggaaactaaggcacagaaaAGTTAAGCAACTTGCATAAATAAGGTCACAAAGTTGCTAGGGAACAAagctag------ggat--------------------------------------------------------------taaactcacctGGTAGATACTT---------AGAGGCCTCTGAGGCA------------TTATGAAATAGGGC---TAACAGCAAAGTGGGTAGATCTTCTTTGCTTGAGCCTTCCTGG---------------------GCCTTTTGCCAATGTCCCACTCTTTTTCCCTCAGGCTGTCTACATCTCAC--------------TTCCTGGGGTTCCTGCATTTCACCAGCTGC-------TTTATCGATCTCT--------GCTCTACCAGGGGCCTGGGTTCATGCAGTATATCCTTTAGGAGAGGCAGGTCCCTCTTAAGTTGTAGACAAGGACAGAG-GGTAGCCAGGACTTGAAGGTCTTTGATAGTGGAGGTCTGCAGCTCTGACCTCACTCCTTATGACTTGGTTCTTGATGCTTTCATGctgtaaaataa---caacaaaagaaagcaaaaccacCAAGACAGAAGGAAGTAATGCACAGCAGGATATCACCTTTACTTGTCAGGTCATGGCTTTAGTTCCAACCC--AGGTGTTGTACATGGTGGTGGTAGTTGGGTTGTGGCAGCCATGGTGCC

a score=21389
s chr3            92135183 696 + 160039680 ATCTCACTC-TCACGGATTGCTTCTTGGC---CGAATGCTGTGTAACAACCACCACA-AAAGCAAATCCTCCAAGGGAGCAG-AAGTGATCCACAGCAGAGGAAGGTCTTT----GTCAGTTCATGGTTTCACTTCCAGGCCCACACATTGTAGGTGGTAATGGAGGCCAGTGGTGGGGGTGGTGGAGTGTTGCCCATGGTGCCTCACTTTCGGGGTAGGCATGGAGAAGGACACTTGGGAGGGCAAGGCTTGACACATCCTTTTTGGGGGCATGATGGTGGACAACATGCCAGGGTACCGGAGCATCTTGGGCTACACAGTGGGGGACACAGTGGGGAAGTTGGTGTGGAACACTGCGACTGACACACCAGGGGGcatggaggacatggaggacatggaggacaGTTTGGTGATGGTGGGCACTTGTCTAGCGAACACTTTTCAGAGCAGCGTTGTAGCAGCTTGTTTAGACAGCTGGGCTGGCACTTGGTCTCGCACTTTTGTTCACATCTGGGATCACAATTCTTGAGACCATTCTTAGAGTCACTAGACTT---------ATCACTTGACATTTCTTCCTTGGATATGTAGGCC-TGAGAAGAAATGGGAGACAGAGTGTCACTGAGGGGCAATTCATAGGGCTTCTTCCTGCTGACTCATCCT-----GTTTTCTCGAGAAGCT-TTCAATGTGTTCAGTCTCTGGA--CCATCTCATT
s HiC_scaffold_1 137633641 670 - 233722169 ACCTCACTCCTTATGACTTGGTTCTTGATGCTTTCATGctgtaaaataacaacaaaagaaagcaaaaccacCAAGACAGAAGGAAGTAATGCACAGCAGGATATCACCTTTACTTGTCAGGTCATGGCTTTAGTTCCAA-CCCAGGTGTTGTACATGGTGGTGG-------TAGTTGGGTTGTGGCAG------CCATGGTGCCTCACTCTGGAGGTAGGCAGGCAGGGGTACACTTAGGTGGACAGGGCTTGGAGCAAGGCCTGTGAGGGCAC--TGATGGATG-CATGGTGGGGGAC------ATGGTGG---ACATGGTGGGGGGCATGGTGGACA---TGGTGGGGGACATGGCGA------------GGGGCACGG------CGGGGGACATGGTGGGCACTTTGGTGGTGGAGGACACTTCTGCTTTGGGCACTTTTCTGAGCAGCGTTGCAGTAGCTTCTTTAAACAGCTGGGCTGGCATTTGGACTCACACTTTTGTTCACACCTGGGGTCACAGTACTTGGGCTCATTCTTGGGGTCTGTAGGCTTACTCTTATCATCAGTTGACATCG-TTTCTGGATTACGCAGGCCTTGCAAAGAAATACAAGACAGATGGTAAGCAGAAAAGAATTCCTTTGGCTTTCTC------AATCATCCTCCCTATTCTTCTTGAGAAGTGACCCCATGTGTTCAGGCTCtggaattcattttatt

a score=35192
s chr3            92142389 2410 + 160039680 cttacaCATGTTTGATTTTATTTGATAG----AAAGTATAATTTATGA--AATGTAGTTTAAAAATTGGTATGACTCTCTGGGGAGGCAGCTCTTTAAATGAAACTCTAAAAT------------------GGGTAATGCTCACTCTAGTCCTTGTT-ATTCAAAATAACAAGAAATTTTAACAAAACAAAACCCTCCCAGCTCTACTCAGTATTGGAGTTGATACA-GCTATATTTAGGACAGAAGATGCACAAGAACAACCATAATCATTGTCCAGATGCAACTCACCCCTTTCTGTTGGTAGTGAAACTGACAAGCAGTCTACTGAGGTGGATGGTAAAGCTGTGCTTGGGAAGGTGGACTTTTCCTCTCGTTCCTCTGCTGAGCTCTG-GGAAGCTGGGGGTAGGTTGGGGATCAGCTCCATTTATGACATCATTACAGCATCATGAGTAGTGAATGTTGGGTGACTTCAGGACTTCTAACTCAAGT------CCTGGACATGAGAATCTAGCTATGATTACTCAACTCTCTGTCT----AGACTTTTCTGA-TCTCTTAAATTAGATGCTGAAAGAATCAGGCTACTGTGAAGA------------------------ATCCT-------------------GAGTGCTGAGGGCAGAAGGCTCATTGCTGCTAGGAGTGGAAAAGCTGGCTAATTGTCTGCCTGTCTGTTCCCTCCTTAGATTCTCAGTCATTTCCCCTGCA---------------TCTCCTAGAAAGTTTGT-GGGATCAC--TCACTCACTTCCACTCTTTTTTACCCTGATTTTATTAATAGGAGGTTTTGAAATCTCTTTTATCATCTCATATTTGCTAGCCCAAGTCCAAAGATTATTTTTAGCGATTTTTC-CAATGTGTCTGTATGAATTCTTTTTCTCTTGTtctctgtctctgtctctctctgtctctCTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTAGTGATGGGAGAT-TGTTTTTGCACTCAGGGAGCAGTTACCTGTTGATATCTAAG------GCTCTTCATTATAAGCAGTGAATCTAACATTCCTGATTACTACTGATCAGTCTAATTACTGGCATATCATCCTGTGTATGGAAAAACCTCTCAGAGGTTTTT-----TTCTGGCTTTG--TCATAGGCCTAATCAGGGAAGTTTATAGTCGGGACTGAGGTGCATTTGAGCTGCAATAGGAGGAAGCTGGGAG---AACACGTAGTA--AATGAAGTTTGTCAGAGACAGGGCAAGAACTTAGTCCCAGAGTCTCATCTTGCCAGTCACAAGTGGCTGTTTTTTAATtttattttaaattttttatgtgcctgagtattttacctccatgtatctctgtgcactgcatgcatatctcatgttcaaagaggctagaagagggcataagaataccaggaactataagtacagaggttgtaagctgtcatgtagttgctgggaactgaacccaggtat---tctgaaagagcaaccagtgctcttaact--actgaactatctctta------agccccACAAGTGACTCTCTGCTAAAACCTTGGTATCATCATACCTCATGTATCAAAACCCTGACAATAGAGTGTGGTGTGGGTTTATAAGTAGGGTGGTAAAATGTAAGTGAGACCATTTTACTTGAAAAGGCTTATAAAGGTGTATGCAACTGAAGGAAGGCTGTGCTGGTGGCACACCATTAGTGCAGATGAGAGAAACATCATCACACAGGTCAATTT------------------CTGTGGAGACATTAAGAAGAAAGTGGAGATGACTCAG----AAAGAGGAGAGTGCTATAACTCTTGAAAACTGAAAAAAGGTGTGTTTTCATTAGAAGGATAGGTTTTTGAGTCTCAAAATGCTGAGAATGGTTGCAGGGGCACCTCTTCAATGATCACTGGAAACCTAGCCTTGATTGTGCCATTGAGCTGACTTGAGACTTTGAATTTATTTTAACCCA--AGAGTCTTCC----------ACATGCCTTAGTTCAGAGACAGGATTGAGGGAGAGGAAAGAAAGGTGATGGGGAGAAGAGAGAATCATAATTCAGA-----------------AAGAATTATGGTCATAAGCAATTAATCCAAACATGCCTAACGAGAACACAGAGGTTGGGGGTATTTGACTGCTTGGGATAAATGGTATTAGAGACATAATCTCAGTGCAAAACACTCATTTTCT---TCTCTCTGTAGTTT--GTTATGAATTCTATTTCTCCAAAGCTGT-----------TCCCATGTCTATTTGGAGAAGCCAAGCTCCACCCGCTGTTCAGCTCTAGACGCAGCTAGCTACTAATCTGGATTTGAAGAAGGCAAGTCATTTTCAACATTGGTGTCAAAGCTGTGGTGATTTTTACTAGCCACAGTCATCTTCCACT-TTCGTCCTTTCCTCCCTCCAGTATAGCTCA--------------------AGAATAATATCTAGTGAACTTAAAACACAGCACAATCTACTCATCTTATCAGCCTTTGAAACACTCATACCTTTTTAAACCT
s HiC_scaffold_1 137636021 2357 - 233722169 CTGGCATACTTCTGATTTCTCttcacaatataaaaataaaatttttacctaatttaattttaaaatcagcatagttctctAGGAATGCAGATTATTAAATCTAACTCTAAAATTGCTGTGTCTATTTGATAGAGTGAGATGCACACAAATTCTTGCTCACTAAAAAAGACAGGAAACTTTGACCAAATACAATCTTCTCATCCCTGCTTAGTGCTTGAGATGCTGTATGTCACTCCCAGGGCAGGAAAAGTAAAAGAGCAGCATTTCTAGTTGTCCAGATGCAACTCACCCCTTTGTGCTGGTAGTTAACCTGACAAGTAATAGAGTGGGATCGATAGTACAGCTGTGCTGGGGAAGGTGGATTTTCCCTCTAGTTCCTCAATCCAGTTCTGAGGACACCAAGAGTGGAGCAGGGACATGC-CCATCTGTGACATCATCATGGCATCACCAGCAGTGATTGTTAGGTGACTCCAAGGCTCCCAGCTCAACTCAGCTCCTTGAATATAAGAATAGAGACATAATAAATCAGTCCTTTGTTTTCTCAGCCCTTTCAGAGTCTCTCAGAATCAACGCTGGCAAGATCAGGCCATAGTGAGGATACCTTGTGCCCCAGACACTTTTTATCCTACCCTAGGATAAAGCCACAGAATAAAAAATGTCTGAGGTTCACTGTTGCTCAGAGAGCAGAAGCTGGCTTGTTCCTTACCAGTGGTTTGTGTCCACAGACTCACAGTTTTAACTCCTGTGAAATTGCACCTTCACCCTTCTGGAGAGCTCCTCTGGATCATAGCCAGTCAgactctccctttctt---cctatttttgtAGCAAAACCTT--------CCTTTTACCATACCATACTCCTTGGCCCAAATCCAAGGATTA-TTTAAGCACCTTTTCTCAGTGTCCttgaaaaaattcagatttt------------------------------------tgggggggggagta-----------------------------gGGTGTAGGatatagcatttcttttttttaaattaggccATGGCCACTCCTTAATATTCAAGGTAAATGTTCTGTATTATAA--AGAAAGTCTTACACTCCTCATCATTCTTGACCAATGAGTTAACT----CAAGATCCTA--------------CCTTAGAaatgtttaggggctggggatttagctcagcggcctaa-----------------------------gcacctgccttgca--agcaggcggtcatgagttcaatccctggtaccgataaaaatgaaaaaaaaaagaggaatgttCTCCTcccagagttcctttttctcctttccaagAGCCAG------------------------------GCCAGTGGGTTTT---------------------------------------------GTGGTTAGAATAGAG---ATGCGTATTGG----TAGTAGTGGGAGGGTGGTGAG-----GGGAAGAT-----AAACAGGGCTTAGGCATAGAGCCTAAACATGAGCCTGGGCTTTGGATTTACCTTAACATTCATTCAATAATCAGTTATACAAGTGACACTGGATTAAAATTTTACTATGACCATGTCCAACATGTTAAAATTCTGACAGCAAAGTGTGGGATGGATTGGGTGATCAGGTGGTGGAGTGAGAATAGAATcaatctattttaaagaaattaccaaTATCTTCATGTTTGAAGGAAGGCAGTACTTACAGAAGA--ACTATTCCCAGTGAGAG--ACATCATCAGAGAGGTAGATTTATAAGGCTTGGTTACTGACTTCGTaagcaatgaagaaaaattaaagatggtCCAGATTTAAAGATGGCAGCATTATAGTTAATGAGAGCTGAAAGCAG--------------------TAGGGATTTGAGTGTGAGAAAACTAAGCATGAATACCGGGGCAAACCTTGGGTGGTTATT-------TGTCCTTGCTT----CATGGGGAAGCCCTGATACCAGGAGTTTGTTTCATTCCAACAGAGTTTACTAAGTGGATGAATATGAGCTGGTCCAGAG-CAAGTTTGGGGAACAAGAAAGAGAG----TAGGGAAGATAAAGAATCTTAATACAGGGTTTACTTGGTATTTACAACAGATAATGCCAGACACAGGTAAAGTAAGC---CTCAATGAAACTGCGGAGTGAGCCAGAATTTAACTTCCTGGGATAAATGGTATAAATGTCACAGTCTTAGTGTAGACTGCGCCCTTACTGCATTTGTCTACAGTTTTGTTCATGAGACCTGTCTTCCCAAAGTTATTAAAGAAGTTGTTCTGCGTCCATCACAGGAGACCTATCTCCATCTGTTGTGATCCTCTGGACAA----AGCAACCAGTCTGCATATGGAGAAGGCA--TCATTTGCCACAGCAGTATCAAATGTATGATGATTTCTCCTCACTGTTGtcaccttcctctctcctttctcccctttCCTAAGTCTTGCTCAGAAAGCTCCTACTGAATGACAGTATATCATTTACTGAACTTTCAACAGAATGtaatttgttcatctttttccCAGTTGTTAAATTCCT-CCTTTTTAAAGCT

a score=3650
s chr3           92149171 81 + 160039680 TAGAGATTAAACCTTGGGCTTCACACAGGGTAGGTCAGTGTTCTACTGCTGAGTTGTACTCC----CAGCTCT---CTTTTTTGTTTT
s HiC_scaffold_1 21152253 88 - 233722169 tAGGGTTTAAGTCTTGGGCCTCAGACATGCTAGGTGAGTGCCCTACCGCTGAGCTGTAGCCCTCAGCACCTCTCCGCCTCTTTGTCTT

a score=3650
s chr3           92149173 72 + 160039680 GAGATTAAACCTTGGGCTTCACACAGGGTAGGTCAGTGTTCTACTGCTGAGTTGTACTCCCAGCTCTCTTTT
s HiC_scaffold_1 92871338 72 - 233722169 GAGATTCAATCTTGCACTTTGTACATGTTAAGTCAGTACGCCACTACTAAGCTGTACCCTGAGCTCTTTTTT

a score=6726
s chr3            92195243 341 + 160039680 GAAGTATTGAGGCTAAA---ATATTCTAAAGGAGGAGAATGAGAAAGTATACAAATGAATAT-ACTATTGAGAGGAAAAAAAAACCCTGGAAACTACAGGGTTGATG-TCCTAATTGTTCTGTTAGCAAGACTATCTCTTTTGAACAGTGTAGCTTGTAGTGTGCTTATTTTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACCACTGAGAAGCACAGATCCTTGCCTACCACT------GAGGTGCCC
s HiC_scaffold_1 137743252 337 - 233722169 GAATTGGTGAAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTG-ATATTATGCAGTTTTTGCTTCTTATC--TCTGTAGG---AATCCTTTTTTCTGAACA-------TTACCATACAATT-TCTTTCAGATTTG--GAGACCCC--AGAAATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCC

a score=6236
s chr3            92195376 169 + 160039680 TTTTGAACAGTGTAGCTTGTAGTGTGCTTATTTTTCAGATTCTCTGAGACCCAGGAGAGATGTCTTATCAAAAACAACAGTGCAAGCAGCCTTGCCATCTACCTCCTGTGCAGATGACT---AGGTGCCCAGAGCCCTGCCCACCACGGAGGTGTTCAAAGCCCTGCCCACC
s HiC_scaffold_1 137760958 160 - 233722169 TTTTGAACA-------TTGTCATATATTC--CTTTCAGATCCT--AAGATACAAGAAA-ATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACC

a score=6271
s chr3            92215812 419 + 160039680 gatctgctggccagacacaacaCCT--GTACCAGCCCATTACAGGGAAATCCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA----------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATCCAGGGAAAAGCAAA--ATAATTGAGATAGTTGTGATTTGAGATGAAAACAAAACAAAATATGTGCTTTCCTTTTATCATATCCT
s HiC_scaffold_1 137742552 423 - 233722169 GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTT-------GGCTAG---TTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATC-ATAGATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCAC-TCTGGTGTAGTATtggcttatttctctttctgtt--aggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAA---CAGCACAGAACAAAATACTTCTTCTCCCATTAT-ATATCTT

a score=7070
s chr3            92215835 489 + 160039680 CTGTACCAGCCCATTACAGGGAAATCCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACT----CTCATGAGCAC---AGTAAGTTTGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGAGGCAACTTTAGGAATG-GAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATCCA-GGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAAACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTT---------CTTTTTTTTCTTTTCGTTtttttttta
s HiC_scaffold_1 137760193 485 - 233722169 CTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAG---CTCTCTGATGACCTACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAGAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgttttattggtaG--ATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGA-ATGTGTTACTTCTG-TTATAACAGAacaagat------ttttcttttacaaatttttcagag----------ttcttttaaaaaatttatgtc-tTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTACCCAGTCTCCCTTTA

a score=12481
s chr3            92218715 1086 + 160039680 TATTCTTTC--AACAGCTGTTTGTGTTGTCCACTCATTCCATCTGGAATATCCTAGCATTTGATG------GGTACTGTCTATAAGAATTTCAAGGTTA---------------------TGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGGAAATG--GCATGAGATTTTCAAAACAGG------TTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCC---TAAAATAGTATGGGAAA---------TTCGTAT-GCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGACCACCCAACAG-----------GTGAAGGCCTCCCAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCAT-GTGCTTATGATGGCTCCTCACAGAGAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCCTTTCTCTTGTTTTTG------TACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTT--TCAGAGGA-GCCTTCTCAGCCTGC-CTGTTACCTGATCA----------------GGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAAACTGCCTAAT--ATTGTATTACT--ATTTTGGCTTTTTTCTATCCTGTGGT
s HiC_scaffold_1 137743024 1051 - 233722169 TAATCTTCCTGAATAGGTGTTTATTCTGTTCCCTA-------CTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCAATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAa-aaagatacttttttaaaaaaaatgtggcctggaa----caaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTG-AAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCC-TGATATTATGCAGTTTTT---GCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTG----CCTGT-----------------------------CACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCA--------GATCAtaaaaagatgaggaaaattGGCTCATTTGCT-------TCTGTAGCAGTTCCTTCAT--TTCTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACTGGTT---------------------------GGTATGCT-ATAATGGT-TTTTCAACTGTGTCAGCATCGCTGCCTTGAAGGAAGTACAGCAACCATCT-CTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTG-AATAAAGTGTATTTTCTTtggttaaa---taataaatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGGTTTATTTCAATCTCTTGAT

a score=10976
s chr3            92218785 1109 + 160039680 TCTATAAGAATTTCAAGGTTATG-------------AGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGGAAATGGCATGAGATTTTCAAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTC--GTATGCACACATAGGTA-----CACAGGGTTCTACAGTCCCAAAAGCGT-----AGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGACCACCCAA---CAGGTGAAGGCCTCCC-AGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAG----------GGGAAGCACAACAGGTATCTACTCTGT-GCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTT-------------------------ACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAA--ACTGCCTAATATTGTA-TTACTA--TTTTGGCTTTTTTCTATCCTGTGGTAGAGA------------------GTTTAAATTTTAATTCA---------ATGTTTCCTAAATGTAGTCAAATCAAAGACCAATACAAACTTTTCCtttccattgattagttgatttattt
s HiC_scaffold_1 137760683 1029 - 233722169 TTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagattttttttt-gggAAAATGACATAAGATGAAAGAAAC-GTTTTCCCAAATCTGAT-AAAGTAAACTGTTCTAGTGGGAGAAGC----CAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATATT-CCTTTCAGATCCTAAGATACAAG-AAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------CAACAGCAATG------------------------------TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTT-------TCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATC-------------ATATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGG-------------TCA---------------ACAATCCTTTGTGTACTGTAAGT-----CCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGA---TGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGAT------AGTTGTaacttttctttcacttct-----taaTAAAGTACACTTTT--TTGTTGCTTGGaacatatttcctttcttttaaaatacttattagcaatatatttgctaattttttacatttattaaatttctagttCAGATTCCTCCCAAGTAGTATGGTTTAAATTTGGATTCATACCAAAAGTTATTCCCTTATTATTTCAAAATCAtgg------------tattttctttcattaat--gttGATTGTTTT

a score=7003
s chr3            92221502 198 + 160039680 tgaactcagg--aagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAGAAGAGT-CTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAG
s HiC_scaffold_1 133881263 198 - 233722169 TGAACCCATATAAAGAGTTATATTGCAGACGTCAGGGCAGTGGATACTGTTAACAAAGGAATGCCATACAAAGGAAATCATGACAAAAGTGGAGGTTCCTATGGTATTACACAGTATATTTTTTGCATTGTTATTAACAACCAAG---ATAAAGGGAAAATTCTTGATAAGAGAATTAATGTGTATATTAAGTATAGTAAG

a score=20172
s chr3            92221508 383 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC--AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAG-AGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 152996042 382 - 233722169 CAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTGTGCAAAAAGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACT--ATATGCTGTTGATATTGTTGTAAACAAGAAACTTAA---GGGCAAGATTCTTGCCAAGAGGATTAATATACGTATTGGGCACATTAAACATTCAAAGAGTCATGATAGCTTCCTGAAACATGTCAAGGAAAATGATCggaaaaagaaggaagccaaagagaaaagTACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTGAACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=21416
s chr3           92221508 383 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACA-----GAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 55447326 386 - 233722169 caaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGGAATGCCACACAAATGTTATCATGGCAAAACATCATGAAAGAGTCTACAGTGTGACCCAGCATGCTGTTGGCATTGTTGTAAACAAGCAAGTTAA---GGGCAAGATACTTGCCAAGAAGATTAATGTGCATATTGAGCATATTAAACACTCAAAAAGTCACAACAGATTCCTGAAATGTCCCAAGGAAAAtggtcagaaaaagaaagaagccaaagagaaaggCTCCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAA

a score=19096
s chr3            92221509 381 + 160039680 aggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC-AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTA
s HiC_scaffold_1 217547037 370 - 233722169 AAAAACAGTGATATCATAGACATCAAGGGAAAGGGTAATGTGCAAAAAGGAATGCCACACAAATGGTACCACGGCAAAACTGGAAGAGTCTACAGTGTTACCCAGCATGCTGTTGGCATTGctgtaaacaagcaagt---taaGGGCAAGATGCTTGTCAAGAGGATTAATGTGCATACTGAGCATATTAAACACTCAG--AGTTGTGATAGCTTCCTGAAATGTATcaaggaaaatgatcagaaaagtaaaaaagacaaagagaaagttACCTGGGTTCAACTGAAGTGccagccagccctgcccagggAAGCACACTT--------CCAGTGGAAAGGAGCCTGAGTTGCTGGTACCCATTCCCTATGCATTCACTGCAta

a score=4484
s chr3            92221823 68 + 160039680 ACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 156299431 68 - 233722169 ACTTTGTGAGCACCAAAGGGAAGGAGCCTAAGTTGTTGGAGCCTGTTCCCTATGAGCTCATGGCAtaa

a score=6354
s chr3            92250624 419 + 160039680 gatctgctggccagacacaacaCCT--GTACCAGCCCATTACAGGGAAATCCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA----------------TGAGCACAGTAAGTTTGGTCGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATCCAGGGAAAAGCAAA--ATAATTGAGATAGTTGTGATTTGAGATGAAAACAAAACAAAATATGTGCTTTCCTTTTATCATATCCT
s HiC_scaffold_1 137742552 423 - 233722169 GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTT-------GGCTAG---TTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATC-ATAGATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCAC-TCTGGTGTAGTATtggcttatttctctttctgtt--aggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAA---CAGCACAGAACAAAATACTTCTTCTCCCATTAT-ATATCTT

a score=6841
s chr3            92250647 462 + 160039680 CTGTACCAGCCCATTACAGGGAAATCCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACT----CTCATGAGCAC---AGTAAGTTTGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTA------GAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATCCA-GGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAAACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTT
s HiC_scaffold_1 137760193 449 - 233722169 CTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAG---CTCTCTGATGACCTACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAGAACTTATCACTATGATACAACCATATAATGTATtg-----gcttgcttttgttttattggtaG--ATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGA-ATGTGTTACTTCTG-TTATAACAGAacaagat------ttttcttttacaaatttttcagag----------ttcttttaaaaaatttatgtc-tTAGCAGTTAAAAGGTCCTTCAGTTTTTT

a score=12481
s chr3            92253528 1086 + 160039680 TATTCTTTC--AACAGCTGTTTGTGTTGTCCACTCATTCCATCTGGAATATCCTAGCATTTGATG------GGTACTGTCTATAAGAATTTCAAGGTTA---------------------TGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGGAAATG--GCATGAGATTTTCAAAACAGG------TTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCC---TAAAATAGTATGGGAAA---------TTCGTAT-GCACACATAGGTACACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGACCACCCAACAG-----------GTGAAGGCCTCCCAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCAT-GTGCTTATGATGGCTCCTCACAGAGAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCCTTTCTCTTGTTTTTG------TACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTT--TCAGAGGA-GCCTTCTCAGCCTGC-CTGTTACCTGATCA----------------GGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAAACTGCCTAAT--ATTGTATTACT--ATTTTGGCTTTTTTCTATCCTGTGGT
s HiC_scaffold_1 137743024 1051 - 233722169 TAATCTTCCTGAATAGGTGTTTATTCTGTTCCCTA-------CTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCAATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAa-aaagatacttttttaaaaaaaatgtggcctggaa----caaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTG-AAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCC-TGATATTATGCAGTTTTT---GCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCA---------------------------AAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTG----CCTGT-----------------------------CACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCA--------GATCAtaaaaagatgaggaaaattGGCTCATTTGCT-------TCTGTAGCAGTTCCTTCAT--TTCTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACTGGTT---------------------------GGTATGCT-ATAATGGT-TTTTCAACTGTGTCAGCATCGCTGCCTTGAAGGAAGTACAGCAACCATCT-CTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTG-AATAAAGTGTATTTTCTTtggttaaa---taataaatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGGTTTATTTCAATCTCTTGAT

a score=10976
s chr3            92253598 1109 + 160039680 TCTATAAGAATTTCAAGGTTATG-------------AGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGGAAATGGCATGAGATTTTCAAAACAGGTTTGCCGAAGCTGACGAAAAAAAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTC--GTATGCACACATAGGTA-----CACAGGGTTCTACAGTCCCAAAAGCGT-----AGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCGTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCACCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGACCACCCAA---CAGGTGAAGGCCTCCC-AGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCACCAGCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAG----------GGGAAGCACAACAGGTATCTACTCTGT-GCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTT-------------------------ACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAA--ACTGCCTAATATTGTA-TTACTA--TTTTGGCTTTTTTCTATCCTGTGGTAGAGA------------------GTTTAAATTTTAATTCA---------ATGTTTCCTAAATGTAGTCAAATCAAAGACCAATACAAACTTTTCCtttccattgattagttgatttattt
s HiC_scaffold_1 137760683 1029 - 233722169 TTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagattttttttt-gggAAAATGACATAAGATGAAAGAAAC-GTTTTCCCAAATCTGAT-AAAGTAAACTGTTCTAGTGGGAGAAGC----CAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATATT-CCTTTCAGATCCTAAGATACAAG-AAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------CAACAGCAATG------------------------------TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTT-------TCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATC-------------ATATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGG-------------TCA---------------ACAATCCTTTGTGTACTGTAAGT-----CCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGA---TGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGAT------AGTTGTaacttttctttcacttct-----taaTAAAGTACACTTTT--TTGTTGCTTGGaacatatttcctttcttttaaaatacttattagcaatatatttgctaattttttacatttattaaatttctagttCAGATTCCTCCCAAGTAGTATGGTTTAAATTTGGATTCATACCAAAAGTTATTCCCTTATTATTTCAAAATCAtgg------------tattttctttcattaat--gttGATTGTTTT

a score=7003
s chr3            92256315 198 + 160039680 tgaactcagg--aagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAGAAGAGT-CTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAG
s HiC_scaffold_1 133881263 198 - 233722169 TGAACCCATATAAAGAGTTATATTGCAGACGTCAGGGCAGTGGATACTGTTAACAAAGGAATGCCATACAAAGGAAATCATGACAAAAGTGGAGGTTCCTATGGTATTACACAGTATATTTTTTGCATTGTTATTAACAACCAAG---ATAAAGGGAAAATTCTTGATAAGAGAATTAATGTGTATATTAAGTATAGTAAG

a score=20172
s chr3            92256321 383 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC--AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAG-AGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 152996042 382 - 233722169 CAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTGTGCAAAAAGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACT--ATATGCTGTTGATATTGTTGTAAACAAGAAACTTAA---GGGCAAGATTCTTGCCAAGAGGATTAATATACGTATTGGGCACATTAAACATTCAAAGAGTCATGATAGCTTCCTGAAACATGTCAAGGAAAATGATCggaaaaagaaggaagccaaagagaaaagTACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTGAACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=21416
s chr3           92256321 383 + 160039680 caggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACA-----GAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 55447326 386 - 233722169 caaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGGAATGCCACACAAATGTTATCATGGCAAAACATCATGAAAGAGTCTACAGTGTGACCCAGCATGCTGTTGGCATTGTTGTAAACAAGCAAGTTAA---GGGCAAGATACTTGCCAAGAAGATTAATGTGCATATTGAGCATATTAAACACTCAAAAAGTCACAACAGATTCCTGAAATGTCCCAAGGAAAAtggtcagaaaaagaaagaagccaaagagaaaggCTCCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAA

a score=19096
s chr3            92256322 381 + 160039680 aggaagGGTGATATTGCAGACATCAAGGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC-AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGCGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTA
s HiC_scaffold_1 217547037 370 - 233722169 AAAAACAGTGATATCATAGACATCAAGGGAAAGGGTAATGTGCAAAAAGGAATGCCACACAAATGGTACCACGGCAAAACTGGAAGAGTCTACAGTGTTACCCAGCATGCTGTTGGCATTGctgtaaacaagcaagt---taaGGGCAAGATGCTTGTCAAGAGGATTAATGTGCATACTGAGCATATTAAACACTCAG--AGTTGTGATAGCTTCCTGAAATGTATcaaggaaaatgatcagaaaagtaaaaaagacaaagagaaagttACCTGGGTTCAACTGAAGTGccagccagccctgcccagggAAGCACACTT--------CCAGTGGAAAGGAGCCTGAGTTGCTGGTACCCATTCCCTATGCATTCACTGCAta

a score=4484
s chr3            92256636 68 + 160039680 ACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 156299431 68 - 233722169 ACTTTGTGAGCACCAAAGGGAAGGAGCCTAAGTTGTTGGAGCCTGTTCCCTATGAGCTCATGGCAtaa

a score=6579
s chr3            92285309 419 + 160039680 gatctgctggccagacacaacaCCT--GTACCAGCCCATTACAGGGAAATCCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACTCTCA----------------TGAGCACAGTAAGTTCACTGGGTCCAAAT--TGATCAAGGGATGAGTATGACTTAGAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATCCAGGGAAAAGCAAA--ATAATTGAGATAGTTGTGATTTGAGATGAAAACAAAACAAAATATGTGCTTTCCTTTTATCATATCCT
s HiC_scaffold_1 137742552 423 - 233722169 GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTT-------GGCTAG---TTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATC-ATAGATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCAC-TCTGGTGTAGTATtggcttatttctctttctgtt--aggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAA---CAGCACAGAACAAAATACTTCTTCTCCCATTAT-ATATCTT

a score=6739
s chr3            92285332 489 + 160039680 CTGTACCAGCCCATTACAGGGAAATCCACTCCCCATGGGGTGAGGCAGGCAATCCTATAAAAAAGTGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTAGTACT----CTCATGAGCAC---AGTAAGTTCACTGGGTCCAAATT--GATCAAGGGATGAGTATGACTTA------GAAGACGCAACTTTAGGAATGGAGGATATCATGTGGAGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTATAATTTGATATCCA-GGGAAAAGCAAAATAATTGAGATAGTTGTGATTTGAGATGAAAACAAAACAAAATATGTGCTTTCCTTTTATCATATCCTGATGGATATGGATAATCCCTTTCAAAGGCTTATGCCACAAGCTGATGAGAATCCCACCTATTCTTT---------CTTTTTTTTCTTTTCGTTtttttttta
s HiC_scaffold_1 137760193 485 - 233722169 CTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAG---CTCTCTGATGACCTACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAGAACTTATCACTATGATACAACCATATAATGTATtg-----gcttgcttttgttttattggtaG--ATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGA-ATGTGTTACTTCTG-TTATAACAGAacaagat------ttttcttttacaaatttttcagag----------ttcttttaaaaaatttatgtc-tTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTACCCAGTCTCCCTTTA

a score=12390
s chr3            92288213 1084 + 160039680 TATTCTTTC--AACAGCTGTTTGTGTTGTCCACTCATTCCATCTGGAATATCCTAGCATTTGATG------GGTACTGTCTATAAGAATGTCAAGGTTA---------------------TGAGGATATTCTGTTCACATAAATAGTATTTTCCAATGGTGTGAAACAGAAATAGATTCTTAGGGGAAATG--GCATGAGATTTTCAAAACAGG------TTTGCCGAAGCTGACGAAAAAAATGTGT-AAGTAAAAGAGGCAATCCAGGACCTCC---TAAAATAGTATGGGAAA---TTTGTATGCACACATAGGTA------CACAGGGTTCTACAGTCCCAAAAGCGTAGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGACCACCC---AACAAGTGAAGGCCTCCCAGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCAT-GTGCTTATGATGGCTCCTCACAGAAAAGGCATTGCTCTCAGGCTGATCTCCTGC--TGCTTTCCTGGCTATACTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAGGGGAAGCACAACAGGTATCTACTCTGTGCTT--TCAGAGGA-GCCTTCTCAGCCTGC-CTGTTACCTGATCA----------------GGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAAACTGCCTAAT--ATTGTATTACT--ATTTTGGCTTTTTTCTATCCTGTGGT
s HiC_scaffold_1 137743024 1051 - 233722169 TAATCTTCCTGAATAGGTGTTTATTCTGTTCCCTA-------CTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCAATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAa-aaagatacttttttaaaaaaaatgtggcctggaa----caaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTTTTT---GCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCT------------------------------------------------------------GTCACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaagatgaggaaaattGGCTCATTTGCT-------TCTGTAGCAGTTCCTTCAT--TTCTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACT-------GGTTGGTATGCTATAATGGTTTTTCAACTGTGTCAGCATCGCTGCCTT------------------GAAGGAAGTACAGCAACCATCT-CTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTG-AATAAAGTGTATTTTCTTtggttaaa---taataaatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGGTTTATTTCAATCTCTTGAT

a score=10802
s chr3            92288304 1015 + 160039680 TGAGGATATTCTGTTCACATAAATAGTATTTTCCAATGGTGTGAAACAGAAATAGATTCTTAGGGGAAATGGCATGAGATTTTCAAAACAGGTTTGCCGAAGCTGACGAAA-AAAATGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTT--GTATGCACACATAGGTA-----CACAGGGTTCTACAGTCCCAAAAGCGT-----AGTTTCTCCATAGGGATCACCTGTTTTCAAAACTGTCATGTAATATCTTTCAGATTCTGAGACTCAAGTACGATGTCTTACTACCAGCAGCAGTGCAATCAGCCGTGCCGGCCTCCTCCTGTGTGCCCACCCCCAAAGTGCCCTGAGCCTTGTCCTCCCCAAGTGTGGCCTGGGCCTTGTCGTCCTGTCATGTGCTTTGAGCCTTGTCTTCCTTCAGTGTGGCCTGGGCCTTGTCGTCCTGTAGTGTGCTATGAGCAATGCCCTCCTCAGCCATGGCAGTCAACATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGACCACCCAA---CAAGTGAAGGCCTCCC-AGTCATCAGGACCAGGGGAAGTGAAAGAAATCTGTCTCATCACCTCACCGACTCCATAGCAACACTTCCATCCTCCTTTGAAAGCCTGTCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAGAAAAGGCATTGCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGCTATACTGAGAATGATCCTTTCTCTTGTTTTTGTACACCAG----------GGGAAGCACAACAGGTATCTACTCTGT-GCTTTCAGAGGAGCCTTCTCAGCCTGCCTGTT-------------------------ACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAATAAAAAAGGACCCCTTTGGTGATGGTCTAATAAATACTTTTTTTCTTGCAAA--ACTGCCTAATATTGTA-TTACTA--TTTTGGCTTTTTTCTATCCTGTGGTAGAGAT------------------TTTAAATTTTAATTCA
s HiC_scaffold_1 137760717  929 - 233722169 TGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagattttttttt-gggAAAATGACATAAGATGAAAGAAAC-GTTTTCCCAAATCTGATAAAGTAAACTGTTCTAGTGGGAGAAGC----CAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATATT-CCTTTCAGATCCTAAGATACAAG-AAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCA---------------------------AAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------CAACAGCAATG------------------------------TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCAT-------CTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATC-------------ATATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGG-------------TCAA--CAATCCTTTG-------------TGTACTGTAAGT-----CCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGA---TGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGAT------AGTTGTaacttttctttcacttct-----taaTAAAGTACACTTTT--TTGTTGCTTGGaacatatttcctttcttttaaaatacttattagcaatatatttgctaattttttacatttattaaatttctagttCAGATTCCTCCCAAGTAGTATGGTTTAAATTTGGATTCA

a score=6911
s chr3            92290997 198 + 160039680 tgaactcagg--aagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACAGAAGAGT-CTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAG
s HiC_scaffold_1 133881263 198 - 233722169 TGAACCCATATAAAGAGTTATATTGCAGACGTCAGGGCAGTGGATACTGTTAACAAAGGAATGCCATACAAAGGAAATCATGACAAAAGTGGAGGTTCCTATGGTATTACACAGTATATTTTTTGCATTGTTATTAACAACCAAG---ATAAAGGGAAAATTCTTGATAAGAGAATTAATGTGTATATTAAGTATAGTAAG

a score=19949
s chr3            92291003 383 + 160039680 caggaagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC--AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAG-AGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 152996042 382 - 233722169 CAAAAAGCGTGATATTTTAGACAACAAAAGAATGGGTACTGTGCAAAAAGGAATGCCACACAAATATTACCATGGCAAAAACAAGAAGAGTCTACAATGTTACT--ATATGCTGTTGATATTGTTGTAAACAAGAAACTTAA---GGGCAAGATTCTTGCCAAGAGGATTAATATACGTATTGGGCACATTAAACATTCAAAGAGTCATGATAGCTTCCTGAAACATGTCAAGGAAAATGATCggaaaaagaaggaagccaaagagaaaagTACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTGAACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=21071
s chr3           92291003 383 + 160039680 caggaagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAACA-----GAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 55447326 386 - 233722169 caaaatGGGTAATATTGTAGACCTCAAGGGAATTGATACTGTACAAAAAGGAATGCCACACAAATGTTATCATGGCAAAACATCATGAAAGAGTCTACAGTGTGACCCAGCATGCTGTTGGCATTGTTGTAAACAAGCAAGTTAA---GGGCAAGATACTTGCCAAGAAGATTAATGTGCATATTGAGCATATTAAACACTCAAAAAGTCACAACAGATTCCTGAAATGTCCCAAGGAAAAtggtcagaaaaagaaagaagccaaagagaaaggCTCCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAA

a score=18751
s chr3            92291004 381 + 160039680 aggaagGGTGATATTGCAGACATCAATGGAATGGGTACTATTCAAAAAGGAATGCCCCATAAGTGTAACCACGGCAAAAC-AGAAGAGTCTACATTGTCACTCGGTGGGCCGTGGGCATCATTGTAAACAAGCAAGTTAATAAGGGCAAGATTCTAGCCAAGAGGATCAATGTGTGGATTGAGCACATCAAGCTCTCAAATAGCAGAAACAGCTTCTTGAAGTGGGTGAAGGAGAACGACCAGAAGAA-AGAGAAGCCAAAGAGAAGGGCACCTGGGTACAGTTGATGTGCCAGCCTGCACCACCTATAGAAGCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTA
s HiC_scaffold_1 217547037 370 - 233722169 AAAAACAGTGATATCATAGACATCAAGGGAAAGGGTAATGTGCAAAAAGGAATGCCACACAAATGGTACCACGGCAAAACTGGAAGAGTCTACAGTGTTACCCAGCATGCTGTTGGCATTGctgtaaacaagcaagt---taaGGGCAAGATGCTTGTCAAGAGGATTAATGTGCATACTGAGCATATTAAACACTCAG--AGTTGTGATAGCTTCCTGAAATGTATcaaggaaaatgatcagaaaagtaaaaaagacaaagagaaagttACCTGGGTTCAACTGAAGTGccagccagccctgcccagggAAGCACACTT--------CCAGTGGAAAGGAGCCTGAGTTGCTGGTACCCATTCCCTATGCATTCACTGCAta

a score=4484
s chr3            92291318 68 + 160039680 ACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 156299431 68 - 233722169 ACTTTGTGAGCACCAAAGGGAAGGAGCCTAAGTTGTTGGAGCCTGTTCCCTATGAGCTCATGGCAtaa

a score=28124
s chr3            92315406 2781 + 160039680 TTTAAATGTTGAATACACA-------GTCAGCTCTATTGAATTGAAATGGTAAAGGGACAGGGATGGGAAGAGTCTG-----TAAATGCACTGACAGTATTTTCTGTGACCAATGAATGCTAGCATTTGTCTTAAGAGGATACAGTGTTGCCATATTCTCTTGGAAATTTGGCATTTGTAGGAGA---AGATGGAAGAGGGATGAACATG---TTAAAGAACTTGTAGAAAAGAAAGAA--CAAACAATGTCTACAGGAAGAGTTTTGAAAAACTGTCTGTCGAAGTTATTAATTCTAAATAGAAAGCTAATAAATAAAATCCAATGTATGAGTTTGACCTAACTTTATATCT-CCCTGCCTGAGATTTCAGACTTTTAATGATCTGATCAACCCTTCTACTT-----TACTCTCTATTAATTACATGTGATG------------GTTTCTTGTTCTGAACCCTAGGGAGTACCACTGGGAACACCCAATGAGGTCTGCTAAATAAA----TTTCTAATTAATTCTCAGGATATTTGTTCACTTTTCCCCATTTCCATTGAATGATAATTGAAGGGAAGCAAAGAAAAAAAGGCACTGAGGAGACTGGATGCCACTCTGCCACCACAATCTGTCCAGGGAGAGTAGCATCATTCTAGAGAG-AATATGATTAATTCTAAAAGGCAAAGAATGTAGGTCAAATTTGACATTATCCAAAGAAAAGA--AAGATGAAGGGGGAAACTCTA------TGCTGAGTAGGGTCACAGGCAGCCCAGTGATGTTAGCACATG------------GGTATTATTTCCCCATGTTTATGGAAAAAAATCTATAGTAAATAGAAGACCC----------TGACCCCATGGCTTACTGAGGGGGGCACTTGGTATCTTTTGTTTCTCTT------CTTTCTAACAAACTTGTAAATGTGTGAGGAAAATACCCCTCCACTTCTGAAAAAGGAAAGTGTAAATGGCTTTACACACTAGCAACGAACTAAGGATGAACTAAAGAGGTTCAAATAATGGAAAACCTTGAATTTAAGACAAATAGAGGCTGTCA--TGAAAAAAGGCTTATG-CTTCCAGTCAAGAAAGAGATGTATCAAACA---GTTGGAAAAG-CTCCAAGTACCA---------CAATT-ACTGGAAGCAAGAAGAAAGAAAAGGACTCTTGAGTCACAAGACTCAACCTAGTAATGATAGCCATGGGTGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGATCCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTT-------------TTGGTACTGTCATGAGCACAGTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTAGAAGATGCAACTTTAGGAATGGAGGATATCATGTGTGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATCCAGGCAACAGCAAAATA-ATTGAGAAAGTTGTGATTTGAGATGAAAACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTT-----ATGCCACAAGCTAGT-GAGAATCCCACCTATTCTTTC--AACAGCTGTTTGTGTTGTCCAGCCATTCCACCTGGAATATCCTAGCATTTGATG------GGTACTGTCTATAAGAATGTCAAGGTTA---------------------TGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGAAA--GTGGCATGAGATTTTCAAAAAAGG------TTTGCTAAAGCTGATGAAATAAATGTGT-AAGTAAAAGAGGCAATCCAGGACCTCC---TAAAATAGTATGGGAAA---TTTGCATGCCCACATAGGTA------CACAGGGTTCTACAGTTCGATAAGCCTAGTTTCTCCATTGTGATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGTCCACCCAAGAATAA--------ATGAGGGTTTCCCAGTCATCAGGACTGGGAAGTAAGAGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCACCCTTCATCCTCCAT-GTGCTTATGATGGCTCCTCACAGAGAAGGCATTTCTCTCAGGCTGATCTCCTGCTGCTTTCCTGGGGATGCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGT------GGAAGCACAACAGGTATCTA-CTGTGTGCTTTCAGAGGA-GCCTTCTCAGCCTGC-CTGTTACCTGATCA----------------GGGCAATGGTCACTGCTGTTTCATTTCCTGAAAAAAAAAAGAACCCCTTTGGTGATGGTCTAATAAATACATTCTTTCTTGCAAAACTGCCTAAT--ACTGTATTATT--ATTTAGGGTTTTTTCTATCCTTTGGT
s HiC_scaffold_1 137741439 2636 - 233722169 ttcaaatatttaattcaCATTATTAAGTGAACTCTGTTGA-TTGGAGGGACAGTATAAAAGAGATGTGAAATGACTAATACTTGAACACATTGA--------------------------TAGCATGTGTCTTGAGTGACCAAGATGTGG--AAAATTGGGTAGAGTAATGGGATTCATAGTGAACTGAGAGAGTAAAGGTGTGTGTATGAGACTGGAGAACTGATAGGGAAGAAAGAGAGTAAACAAC-----CAGGCAAAGTTTT---------------------------CCTATTTGGAAAGAGTGTGACTGGAAGTCAATATATAGGATCAGTCAAGGTTTATAACCACCCATTCTCAAATTCTACTTTTTTAGTTATCTGACTTTTTCTCCTTCCCAAAGCTGCTCTTACTTACTTACATGAGGTGCTATGAGTGTCTGTATCTTGTTTTGTACCTTTGGGAATATCAGAGGGGAT--CAAATGATTTTgattcaataaaaatgtattgaatGGATGCTTAGGATTTTTGTCTACTT---CTCATTTCCTTCATATGGAGATTCAGTACATTCTTAAA----------CTGTGAAGTCT--------------CATC----TTTGAGCAAGTGAAGGAGAAAAACATGGAAGAGTAAAAAGATAGCTACAAGAAGACAAAGAATTTAAGTTAAAACTGAGATTGTATGAGTGACAGacaaaaatggagaagaaaatttcAGGGTTGTACTGATT----TAAGAAATAGACCAGTGAACTCAGAACACACTGTGAGAATCAGGTACTGTTTTTCTCTGTTCA-GAGAAAAACTCAAATGCAAGAAGGAGAAGTAAAATGGTGGGGGACACAGAGCTTCTTAGAGATAGAACTGGGAACAAATTGCATCATTTGTGGGTTTTGTTAGCACACTGGAAACTG-------------------------------AGAGAGATGAAAATGGATTTATGTACTG----TGAGATATTATTCAGCTAAAGTGGAACAAATG--------CATCAGTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGAGTTATTGTCCTAAAATATATAGAGAGAGCCTTTGAACACGAGTTACAGAATTCACCAAATTCTCTTCATCCATCAGTTCAATGAAACTGAGTCTAAGGCA--GGTTTTCAGAGTCACAAGAACTG-------------------GAGCAGGTTATATCCTATTTTCCAGAG---------AACCTGTGAAGGTAAGATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTT-------GGCTAGTTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCA-TAGATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCAC-TCTGGTGTAGTATtggcttatttctctttctgtt--aggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAAC--AGCACAGAACAAAATACTTCTTCTCCCATTAT-ATATCTT---------------CTCCCATTATATGTCTTTTTGATGTCTTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTC-------CCTACTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCAATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAa-aaagatacttttttaaaaaaaatgtggcctggaa----caaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTT---TTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCC---------------------------AGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCA------------------------------------------------------------CAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAG--ATCA----taaaaagatgaggaaaattGGCTCATTTGCT-------TCTGTAGCAG---TTCCTTCATTTCTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCA-------------TCTAAA---------CAACTGGTT-----GGTATGCT-ATAATGGT-TTTTCAACTGTGTCAGCATCGCTGCCTTGAAGGAAGTACAGCAACCATCTCTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTG-AATAAAGTGTATTTTCTTtggttaaa---taataaatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGGTTTATTTCAATCTCTTGAT

a score=21638
s chr3            92316506 1761 + 160039680 TCTTGAGTCAC-AAGACTCAACCTAGTAATGATAGCCATGGG-TGGGATATTTCCTATTTTGTAGAGTCCCTGTCCAGCCAGTTACGGATGAATTTGCATTTGTGTTAGGAAATTCCAGGACCAGCCCATTACAGGGAGATCCACTTCCCACTGGGTGAGGCAGGCAATCCTATAAAAAAGAGTCTCAGTGCTTGACTGCAGTATTCCTGGTACTCAAGCATTGGTCTGCTCCGGAGAACCTGGTGAGTCTGATTTCTTGAGTTCTTGAGAGGGTCTGCTCTTTTTGGTACTG----TCATGAGCACA---GTAAGTTCGGTCGGTCCAAATT--GATCAAGGGATGAGTATGACTTA------GAAGATGCAACTTTAGGAATGGAGGATATCATGTGTGGTGCAAGCATGCTTTTGCTTTTGTTCGAGCTAAAATTTGATATCCAGGCA-ACAGCAAAATAATTGAGAAAGTTGTGATTTGAGATGAAAACAAAACAATATATGTGCTTTCCTTTTATCATATCTTGATGGATATGGATAATCCCTTTCAAACGCTTATGCCACAAGCTAGTGAGAA--TCCCACCTATTCTTTCAACAGCTGTTTGTGTTGTCCAGCCATTCCACCT----GGAATATCCTAGCATTTGA------TGGGTACTGTCTATAAGAATGTCAAGGTTATGAGGATATTCTGTTCACATAAATAGTATTTTCCAGTGGTGTGAAACAGAAATAGATTCTTAGGGAAAGTGGCATGAGATTTTCAAAAAAGGTTTGCTAAAGCTGATGAAATAAA-TGTGTAAGTAAAAGAGGCAATCCAGGACCTCCTAAAATAGTATGGGAAATTT--GCATGCCCACATAGGTA-----CACAGGGTTCTACAGTTCGATAAGCCTAGT------TTCTCCATTGTGATCACCTCTTTTGAAAACTGTCATGTAATGCCTTTCAGATTCTGAGACTCCAGAACAATGTCTTACCACCAGCAGCAGTGCAAGCAGCCGTGCCAGCCTCCTCCTGTGTGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCCCCCCTCAGCCATGGCAGCCAAAATGCCCTCCTGTGCAATTTCCACCA---TGCCAGCAGAAGTGTCCACCCAAGAATAAATGAGGGTTTCCC-AGTCATCAGGACTGGGAAGTAAG--AGAAATCTGTCTCACTGGCTCACCAACTCCATAGCAACACTTCCATCCTCCTTTGAACGCCTGTCCTGGATGCAGAAGAATCTTCTCCA-CCCTTCATCCT-CCATGTGCTTATGATGGCTCCTCACAGAGAAGGCATTTCTCTCAGGCTG---ATCTCCTGCTG----------------CTTTCCTGGGGATGCTGAGAATGATCTTTTCTCTTGTTTCAGTACACCAGTGGAAGCACAACAGGTATCTACTGTGTGCTTTCAGAG----GAGCCTTCTCAGCCTGCCTGTTACCTGATCAGGGCAATGGTCACTGCTGTTTCATTTCCTGAAAAAAAAAAGAACCCCTTTGGTGATGGTCTAATAAATACATTCTTTCTTGCAAAACTGCCTAATACTGTATTATTATTTAGGGTTTTTTCTATCCTTTGGTAGAGAGATTTTAAATTTTAATTC---------AATGTTTCTTAAATGTAG--TCACATCAAAGACTAATTCAACCTTATTCCttttttatt
s HiC_scaffold_1 137760078 1593 - 233722169 TTCTGAGTCACCAGGAATTAACATTATA-TGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAG---CTCTCTGATGACCTACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAGAACTTATCACTATGATACAACCATATAATGTATtg-----gcttgcttttgttttattggtaGATAG--TTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGT-GTTACTTCTG-TTATAACAGAacaagat------ttttcttttacaaatttttcagag----------ttcttttaaaaaatttatgtctTAG--CAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGG--TCTCTACCCAGTCTCCCTTTAGGGACTTTACAAGACTTTGAAACTTGTGGCTGCTTT-----------------TCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagattttttttt-gggAAAATGACATAAGATGA-AAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTCTAGTGGGAGAAGC----CAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTAC-AtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATA-TTCCTTTCAGATCCTAAGATACAAGAA-AATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTCA-------------------------CAA-----------------------------------------------------------------------------CAGCAATG---------------TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTT-------TCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATC--------------ATATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGGTCAACAATCCTTTGTGTACTGTAAGTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCA--ACTGTCTCCTTTGTCTC----CATCAGATGATGTTCTGCC--TATCCATT---TGGCTTCTGGGCAACGAATTTTCCC------------ACCTGAT------AGTTGTaacttttctttcacttctt-----aaTAAAGTACACTTTT--TTGTTGCTTGGaacatatttcctttcttttaaaa-tacttatta--gcaatatatttgctaattttttacatttatt-------aaatttctagttCAGATTCCTCCCAAGTAGTATGGTTTAAATTTGGATTCATACCAAAAG-----------TTATTCCCTTATTATT

a score=4088
s chr3            92317499 66 + 160039680 TGCCCACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCA
s HiC_scaffold_1 137743509 66 - 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCA

a score=4032
s chr3            92317504 141 + 160039680 ACCCCCGAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTG--AGCCTTGTCCT---------CCCCCAGTATGCTGTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 137743422 152 - 233722169 ACCCCAGAAATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACC

a score=3793
s chr3            92317587 78 + 160039680 CTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAGTATGCTGTGAGCCTTGTCCTCCCCCAGTGTGCTGTGAGCCATGCC
s HiC_scaffold_1 137743489 78 - 233722169 CCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCC

a score=8423
s chr3            92320909 140 + 160039680 AAGAAAGAGAAGCCAAAGAGAAGAGCACCTGGGTACAGTTGAAGTGCCAGCCTGCACCACCTATAGAACCACACTTTGTGAGGACCAACAGAAAAG-AGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 152996283 141 - 233722169 aaaagaaggaagccaaagagaaaagTACCTGGGTTCAACTAAAGCGCCAGCCTGCCCCTCCCATAGAAGCACACTTTGTGAACACCAAAGGGAAGGTAGCCTGAGTTGTTGGAACCTGTTCCCTATGAGCTCACGGCATAA

a score=8525
s chr3           92320909 140 + 160039680 AAGAAAGAGAAGCCAAAGAGAAGAGCACCTGGGTACAGTTGAAGTGCCAGCCTGCACCACCTATAGAACCACACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 55447572 140 - 233722169 aaaagaaagaagccaaagagaaaggCTCCTGGGTTCAACTAAAGCACCAGTCTACCCTACCCAGAGAAGCACACTTTGTGAGAACCAATGGGAAGGAGCTTGAGTTGCTGAAACCTATTCTCTATGAATTCATGGCGTAA

a score=4484
s chr3            92320981 68 + 160039680 ACTTTGTGAGGACCAACAGAAAAGAGCCTGAGCTGTTGGAGCCCATTCCATATGAATTCATGGCCTAA
s HiC_scaffold_1 156299431 68 - 233722169 ACTTTGTGAGCACCAAAGGGAAGGAGCCTAAGTTGTTGGAGCCTGTTCCCTATGAGCTCATGGCAtaa

a score=20458
s chr3            92325695 1626 + 160039680 GGAACACCCACTGAGTCACTAC-ACTCAGTAGTG-ATGAAGTCCA-GAAAGAGGGCATTTCCCATCTTT-AGGGTCCCAGTCCAGCTCGTCATGCACTGGTTTGCATTTTGGTTGGGAAATT------CTCAGTCAGTTCTG----------CTCACACTGGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGCAGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGTTT--TTGGGA-----GTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATG-GATACAATAGACCCCTGTGGTAAGCAGCTTTTCCTTTTATTTGATAGGTGGTTTA-------------------------AAAGAGTTT-------------------------ATTTCTCTTTTATATGCATATTTTGGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGATTCCTCAACTG--TCTTTTACTGTCCAACTTCAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGATTCTTT-GTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAA-ATCATGAAACAAAAGATTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGTTATGGAATAATGATTCTGCCCTGGGGAAGGGGGGT----TGATGT-------TCCAAGTTTCAATCAATCTTGTCTGGATTAAT---TAACCCCTAACACTGTCATGAAGTTTTTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTC-----------AGGAGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACATGTTTCACCCTCCTTGTGGCTGCGATGATCCCTTACAGGGAAGGCATTTCACTGAAGTTGTCCTGCTTTTGTTGTCAAGGGGCTGTTGAGAATGATCTGTCCTCAGTGGT-TCCGTGTCCCAGATGCTTA-GAGGGTAGAGCAACTTCTGTCTATTCTGTGCAC-TCAGAGGATGTTTTTCAAAACTGTC----------------AGTTATCTTGTTTG--TATTGTCACTGAGGTTTCATTTCCTGAATAAAGCACAA---TCTGATTAATGGTATTCATATGTCCCTTTTTCTAAAACACTCTATTTTCTTCCTGATATGCTTA-TGTTCCTTTATTTTTATTCATTGATCCCAAGGTTACTCTCCTGCAATCAAG--GTATGACTGATATTGGA--TCATATCAAATATTA
s HiC_scaffold_1 137760070 1588 - 233722169 GGTACAGTTTCTGAGTCACCAGGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGACCTAC--CACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCTTAG------GTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGA----GAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgtttta--ttggtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttaca--aatttttcagagttcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTACC------CAGTCTCCC-----------------------------------TTTAGGGACTTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagatttttttttgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTT--CTAGTG--GGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAAT---GTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATATTCCTTTCAGATCCTAAGATACAAGAA-AATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------------------CAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCAT------------ATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAG-----------------------------------GTCAACAATCCTTTGTGTACTGTAAGTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGATGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcacttctt-aaTAAAGTACACTTTTTTGTTGCTTGGaa--catatttcctttcttttaaaatac------ttattagcaatatatttgctaattttttacatttattaa---atttctagttCAGATTCCTCC---CAAGTAGTATGGTTTAAATTTGGATTCATACCAAAAGTTA

a score=18049
s chr3            92325789 1532 + 160039680 GGTTTGCATTTTGGTTGGGAAAT----------------TCTCAGTCAGTTCTGCTCACACTGGCCTGGCCAGCCAATCCTATAAAGGGATCCTTGGCTGCACAACTGC-AGACTCCTGGTACTGAAATCCTGGTCTAGTTTGGTGAACCCGGTGAGTGCCCTTTCTTGATTTGGTCTGTCTTTATGTTTATTCCGAGTGCTGTAGTGAGTTTTTGGG-AGTAAGTGTCATGTGTTCAGTTT-TGATTATGAGATGAAAGGCACATTCCTAGTAGTCATAAGTTTAGCAATGGATACAATAGACCCCTGTGGTA--AGCAGCTTTTCCTTTTATTTGATAGGTGGT-------------------TTAAAAGA------------GTTTATTTC------------------------TCTTTTATATGCATATTTT---------GGTGTTGTTTGAAAGGCCTTATACCTTAGCAGGTATTAGAGCCTGAGA---TTCCTCAACTGTCTTTTA--CTGTCCAACTTCAGACAATCTGTTGGGATGATACAAGCAATGAAGAGGACAGAAACTGGTTTTGTGATTTTTCAGGTCACTAGTACTTGTGGCTTCCTGTCTTGAAGGTGAT-TCTTTGTGAATTCATCATTTTTGTTTTCACTGAAACAAACTAATTCTCCTGAATAAAAAAAAAT----CATGAAACAAAAGA--------TTTATCAAGTCTACTTTAGGAGATTGCTGACAGGTAATGGAAAAGCCAGGAAGTCCTAAAACAAGAGT----TATGGAATAATGATTCTGCCCTGGGGAAGGGGGGTTGATGTTC--CAAGTTTCAATCAATCTTGTCT-----GGATTAATTAACCCCTAACACTGTCATGAAGTTT-TTTCAGATCCTGAGGCTCCAGCACAATGTCTTACCACTAGCAGCAATGCAAGTAGCCCTGCCAACCTCCTCCTGTGTGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAGGGCTTCAGAAGAATTCAG----------GAGAAGAGAATCCATCTCAAGTACTTCCATAGCAACACCTCCATCTTCCCTTCAAAGCTTGTCATGCATGCAGAGGAATCTTCTACATGTTTCACCCT-CCTTGTGGCTGCGATGATCCCTTACAGGGAAGGCATTTCACTGAAGTTGTCCTGCTTTTGTTGTCAAGGGGCTGTTGAGAATGATCTGTCCTCAGTGGTTCCGTGTCCCAGATGCTTAGAGGGTAGAGCAACTTCTGTCTATTCT-GTGCACTCAGAGGATGTTTTTCAAAACTGT-------------CAGTTATCTTGTTTGT-------ATTGTCACTGAGGTTTCATTTCCTGAATAAAGCACAATCT-----GATTAATGGTATTCATATGTCCCTTTTTCTAAA-ACACTCTATTTTCTTCCTGATATGCTTATGTTCCTTTATTTTTATTCATTGATCCCAAGGTTACTCTCCTGCAATCAAGGTATGACTGATATTGGATCATATCAAATATTA
s HiC_scaffold_1 137742552 1581 - 233722169 GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGGCT-TCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCAT-AGATGAGTGTTAC----TTAGTTGATGAAAAATTAGGACTTGA-------GCACTCTGGTGTAGTATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCAT-TATATATCTTCTCCCATTATATGTCTTTTTGATGTCTTTA------GCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTC------------CCTACTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCT-GCCCCTTTGGCTGCA-ATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAaaaagatactttt------ttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTTTTTGCT---TCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTG-CCTG-----------------TCACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaagatgaggaaaattGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTT---CTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACT-------GGTTGGTATGCT---------------------ATAATGGTTTTTCAACTGTG--TCAGCATC---GCTGCCTTGAAGGAAGTACAGCAACCATCTCTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGTGTATTTTCTTtggttaaataata--aatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGG---TTTATTTCAATCTCTTGATCCCTAGATCAGGGTCACGTATTTAGTACAGTCTGAATTTTGTGTCATGCTAATGATta

a score=5087
s chr3            92326649 130 + 160039680 TGCCCACCCACAAAGTGCCCAGAGTCTTGTCCTCCCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCA------AAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCA---TGCCAGCAGAAATGCCCTCCTG
s HiC_scaffold_1 137743509 124 - 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCC---------TCCTGTGCAG------CCTCCCTCATGCTGccagcagaagtgcctgcctg

a score=3553
s chr3            92326683 133 + 160039680 CCCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCTAGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATGCCAGCAGAAATGCCCT--CCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACC
s HiC_scaffold_1 137743489 103 - 233722169 CCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCA------------GAGCCATGTTCACCTCC------------AAAGTGCCCTGAGCTGTGC-----CTGTCACCA---CAAAAGAAATGCCCTCC

a score=8529
s chr3            92338766 878 + 160039680 AGGAATATAAGTGAGTCAGTGCACCACAGAATATTAATAAGCTGAAGTAGAATAAATAAAACACACAATTTAGGACATAAGAAAATTGTAACAGAGGAAAAAAAGCATTTGCTATAATCACAAAAGATTACATAGGCAACCAGTGA------------GATCTCACCGAAA---CTTAAAACATTGAGTGCTCA------CTGAGTC----ACAGGTCTCAACGGTGATGATGTCCAGGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATTTTGGGCCCTGCCCATTATCAGTCAGATTTGTTCCTACTAGGCTGGCCAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTGTACATGTTGTT---CTTCCTATGTGCTGTAGTGACATTTGAGGGAATATGTGTCTTGAGTTC-AGTTTTGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCA-GTGAATACAATAGTCAAGAGTGATAAGTTACTTTTCCTTACATTCAATAGCTTGTAG--------------------------------------------------AAGACCAGGTATTTCTCTTTCA--TGTATATCTTTT-------GGTGTTCTTTGAAAGGCTATATACTTAGTAAGTATTAGAACCC--GAGACTTCCCTGA-----TGTCCTTTACTCTCCAGCCTCAGACAAACTGCTGGAATGATGTAGGTAATAAAGAGGACAGAAACTGTTTTTGTGATTTTTCAGGGCATCAGTCCTTGAGACTGCCTGTCTTGAAGGTGTT-TCCTTGTGTGAACAGCATTACTTGTTTCTTTGGAACAAAATAGTTTCCCTTAAGAAAA
s HiC_scaffold_1 137742288 916 - 233722169 AGAGATGAAAATGGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCA---GTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGA--------GTTATTGTCCTAAAATAT-ATAGAGAGAGCCTTTGAACACGAGTTACAGAATTCACCAAATTCTCTTCATCCATCA---GTTCAATGAAACTGAGTCTAAGGCAGGTTTTCAGAGTCACAA-GAACTGGAGCAGGTTATATCCTATTTTCCAGAGAACCTGTGAAGGTAAG---------ATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTA-----GTTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCAT-AGATGAGT----GTTACTTAGTTGATGAAAAATTAGGACTTGAGCACTCTGGT--GTAGTATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCATTATATATCTTCTCCCATTATATGTCTTTTTGATGTCT------TTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTCC-------------CTACTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGA-TGCTCAAGATTTCTGCCCCTTTGGCTGCA-ATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAaaaagatacttt--tttaaaaaaa

a score=9871
s chr3            92338927 717 + 160039680 TAAAACATTGAGTGC--TCACTGAGTCAC-AGGTCTCAACGGTG-ATGATGTCCA-GGAACAGGATATTTCCCATTTTGTAGAGTCCCAGTCAAGCCAGTCATACATGCATTTGCATTTTGGTTTGGAAATT-TTGGGCCCTGCCCATTATCAGTCAGATTTGTTCCTACTAGGCTGGC-CAGCTTGTCGTATAAATTGGTCCTTGACTGTGAGACTGCAGACTCCTGGTACTCAAGGCCGAGACTACTTTGGAGAACCCGGTAAGTGTCTTTACTTGAGTTGCTCTGTACATGTTGTTCTTCCTATGTGCTGTAGT-------GACATTTGAGGGAATATGTGTCTTGAGTTCAGTTTTGATCATGGGATGAATGGTAGCTATCTAGTAGTTAGAAAATTAGCAGTG-AATACAATAGTCAAGAGTGATAAGTTACTTTTCCTTACAT--TCAATAGCTTG---------TAGAAGACCAGGT-------------------------------------ATTTCTCTTTCATGTATATCTTTTGGTGTTCTTTGAAAGGCTATATA-CTTAGTAAGTATTAGAACCC---GAGACTTCCCTGATGTCCTTTACTCTCCAGCCTCAGACAAACTGCTGGAATGATGTAGGTAATAAAGAGGACAGAAACTGTTTTTGTGATTTTTCAGGGCATCAGTCCTTGAGACTGCCTGTCTTGAAGGTGTTTCCTT-----GTGTGAACAGCATTACTTGTTTCTTTGGAACAAAATAGTTTCCCTTAAGAAAA
s HiC_scaffold_1 137760060 725 - 233722169 TAATACAGTTGGTACAGTTTCTGAGTCACCAGGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAG--AATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGACCTAC--CACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGT--CTGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACA--TAAGACAGTTTG---ATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAA----GGAGAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgttttattggtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttt--tacaaatttttcagagttcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGG-GCCCTTTGGTCTCTACC------CAGTCTCC-----------------------------------CTTTAGGGACTTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGT----AGCATTACCAAGTTCTTTGgcatagag-atttttttttgggAAAA

a score=11961
s chr3            92340022 916 + 160039680 ggaaaagaaaagaaaAGGTCTGAAACATAGTAGCCATTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAA---AATAATGTTGATGTTCAAAGAGACAAATG----GACTTGAAGCTCCAGAG----TTCCATCTATCTTCTCTG-AATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCA--ACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTTTCACCCTCCATGTTCCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTGTCCTGCTTTTGGTGTCAAGGGGCTGCAGAGAATGATCTGTCCTCAGTTAT-TCAGTATCCCAG----GTGCTCAGTGGGAACTATAGCTGCTATCTATCCTGTGCCCTCAGGAGATGTTGCCAAAAACTCTCAATCACCTTTGGTTTTGT-----------------------GTTGTCAGCATGGTTTCATTTCCTGAATAAAGTACAATCTACATAATGACGTT-----CATGTGTTCCTTCCTTCTAAAACTTACACTATTATCTGTAACTCATGTATTTGC
s HiC_scaffold_1 137760779 798 - 233722169 ggAAAATGACATAAGATGAAAGAAACGTT-------TTCCCAAATCTGATAAAGTAAACTGTTC----TAGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTT----CTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATAT-ATTCCTTTCAGATCCTAAGA-TACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTG----------------GTCATAA-----------CTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------------------CAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCAT------------ATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGGTCAA-------------------CAATCCTTTGTGT------ACTGTAA----------GTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTG-----TCTCCTTTGTCTCCATCAGATGATGTT-----CTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcacttctt-aaTAAAGTACACTTTTT----TGTTGCTTGGaacatat-ttcctttcttttaaaa----------tacttattagcaatatatttgc

a score=17637
s chr3            92340027 945 + 160039680 agaaaagaaaAGGTCTGAAACATAGTAGCCATTC-----CCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGAAAAGCCAATCAGCTCTAAAATAGGAGTTGGAA----------AATAATGTTGATGTTCAAAGAGACAAATGGACTTGAAGCTCCAGAGTT----CCATCTATCTTCTCTGAATTGATTGTCCCTGAACACACTCATGTCATCTCTTTCAGATCCTGAGAATCCAGCACTATGTCTTACCAGCAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATGCCAGCAGAAATGCCCTCCTGCGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCTAAGAGCAAGTGAGGTCTTCAGCAGTCATCAGGACAAAGGGAAAAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCCATCTTCCTTCCAAATCCTGGCATGATTGCAGAGGAATCTCCTTCACCTTTCACCCTCCATGTT-CCTGTGATGTCCCCTAACAGGGAAGATGTTTCCCCGAAGTTGTCCTGCTTTTGGTGTCAAGGGGCTGCAGAGAATGATCTGTCCTCAGTTATTCAGTATCCCAGGTGCTCAGTGGGAACTATAGCTGCTATCTATCCT-GTGCCCTCAGGAGATGTTGCCAAAAACTCTCA-ATCACCT-----TTGGTTTTGTGTTGTCAGCATGG---------------TTTCATTTCCTGAATAAAGTACAAT--------CTACATAATGACGTTCATGTGTTCCTTCCTTCTAAAACTTACACTATTATCTGTAACTCATGTATTTGCATTTTGGTTTGGAAAATTTTCAA---CCTGACCTCTA
s HiC_scaffold_1 137743197 883 - 233722169 aaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggta---------cattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTTTTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCA---------------------------------------------CAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaagatgaggaaaat-tGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTTCTT-CAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACT-------GGTTGGTATGCT---------------------ATAATGGTTTTTCAACTGT--GTCAGCATC---GCTGCCTTGAAGGAAGTACAGCAACCATCTCTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTT----CTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGTGTATTTTCTTtggttaaataataa-------atattttcttcttttgaaatgtaCTTTATTAACTATA--TCATGTA-----ATTTTGGTTTA------TTTCAATCTCTTGATCCCTA

a score=4306
s chr3            92340304 157 + 160039680 TGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCA---TGCCAGCAGAAATGCCCTCCTG
s HiC_scaffold_1 137743509 124 - 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAA---------------------GAAATGCCC---------TCCTGTGCAG------CCTCCCTCATGCTGccagcagaagtgcctgcctg

a score=3578
s chr3            92340309 108 + 160039680 ACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCTAAAGTGTCCTG--AGCCTTGTCCT----CCAC-----CAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTCC
s HiC_scaffold_1 137743422 119 - 233722169 ACCCCAGAAATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTC

a score=4517
s chr3            92340338 78 + 160039680 CTCTAAAGTGTCCTGAGCCTTGTCCTCCACCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAATGCCCAGAGCCTTGTC
s HiC_scaffold_1 137743489 78 - 233722169 CCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCC

a score=4648
s chr3            92340928 204 + 160039680 ATGTATTTGCATTTTGGTTTGGAAAATTTTCAACCTGACC----TCTATCAGTCAGCTCTGCTCCTACTGGGCTGGCCAGCTAATCTTCTAAACTGTCCGTGATTGCATAATTTCAGACACCTGGTTCTCAAGTCCTGTGCTACTTTGGAGAAACCGCTGAGTGTCTTTTCTTGAGTTTGTCTGCCTTTTTGTTTTTCTTATGTGTTG
s HiC_scaffold_1 137760165 202 - 233722169 ATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTC--TGATGACCTA---CCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTC-TGTTGGTCTTCTTAGGTATTG

a score=23870
s chr3            92351789 1727 + 160039680 GGAATATAAATAGGCCAAGGCACCACAGAATATTAATAAGCTTAAGCAAAACAAATAAAACACTT----AATTTAGGA----TATAAGAGGGGGAAAAAAGCATTTGTTACAATCACAGAAGAGAAC-----AAAGTGAGAT------CTCACTGAAACTT-----------AAAACAGTGAGTGCTCACTGAGTC----ACAGGTCTCAACAGTGGTGATGTCCAGGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGCTCCCACTCGACTGGCCAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGC-AGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGTCATGTTGTT---CTTCCTATGTGCTGTAGTCAATTTTGAGGTAGTGTGTGTCTTGAGTTCAGTTT-TGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCAGAAAATTAGCAGTGGA------TACAATAGCCAATTGTGATAAGTGGCTTTTTGTTA-----CATTTGGTA---------AGTTGTAGAACAG-------------------------------AGGATATTTCTCTTTCA--TGTGTATCTTTTGGTGTTCTGTGAAAGGCT-ATGTACCTAAGTAGGTATGAGAACCT-GAGACTTTCCTGAG------------CTTTCCTTTACTGTCCAACCCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGATTTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTT-TGCTTGTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAA----GGTCTGAAACACAGTAG-----CCTTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGG----------GAAATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAGTTCTATCTATCT-TCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCAT------GGGTGAATCCTCTCTACCTGTCA--CTCCCATTTGCCTGTAATGACCTCTTTTAGGGAAGGCATTTTCCTTAGGTTGTCCTGCCATTTCTCTCATACAGGCTGCTGATTATATGTTCTCAAGTTGTTCAGTGTCCCAAATGCTCAGAAAGAATAACACCTGCTGTCTATCCTGTGCACC--CAGAAGATGTTTTCCAAAACTGT--------------------------CAATTGTTGTGTTGTCATTGTTGTTTCATTTCCTGAATAAAGCACAATCT-----GCTTAATGGTATTCATGTGTCCATTTTTTTTTCTGAAATGTACTGTGTTGCCTTCCTGATATGCTCTTTTTTTTTCT
s HiC_scaffold_1 137742289 1774 - 233722169 GAGATGAAAATGGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCAGTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGAGTTATTGTCCTAAAATATATAGAGAGAGCCTTTGAACACGAGTTACAGAATTCACCAAATTCTCTTCATCCATCAGTTCAATGAA-----ACTGAGTCTAAGGCAGGTTTTCAGAGTCACAA-GAACTGGAGCAGGTTATATCCTATTTTCCAGAGAACCTGTGAAGGTAA---------GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTT----TGGCTAGTTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCA-TAGATGAGTGTTACTTAGTT----GATGAAAAATTAGGACTTGAGCACTCTGGTGTAGT--ATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCATTATATATCTTCTCCCATTATATGTCTTTTTGATGTCTTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTCCCTACTG--AAACTTCACAGTA-----TATAATGATAATTGGAATTTCTTGT---GAGATG---------CTCAAGATTTCTGCCCCTTTGGCTGCA-ATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAaaaagatacttttt--taaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGA-AGTAaaaggta--------cattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTTTTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTG-CCTG-----------------TCACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaagatgaggaaaat-tGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTT---CTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACT-------GGTTGGTATGCT----------------------ATAATGGTTTTTCAACTGTGTCAGCATCGC---TGCCTTGAAGGAAGTACAGCAACCATCTCTCTTG-GCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGTGTATTTTCTTtggttaaataataaatat-------tttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGGTTTATTT

a score=24309
s chr3            92351923 1546 + 160039680 TGAAACTTAAAACAGTGAGTGC--TCACTGAGTCAC-AGGTCTCAACAGTG-GTGATGTCCA-GGAACAGGATATTTCCCATTTCGTAGAGTCCCAGTCAAGCCAGTCATGCATGGATTTGCATTTTGGTTTGGAAATTTTGGGACCTGCCCACTATCAGTCAGTGTTGC---TCCCACTCGACTGGCCAGATAGTCCTATAAATTGGTCCTTGACTGTGAGACTGCAGACTCCTGGTACTCAGGTCCTAGGCTACTTTGGAGAACCTGGCAAGTGTCTTTTCTTGAGTTGCTCTGTCATGTTGTTCTTCCTATGTGCTGTAGTCAATTT-----TGAGGTAGTGTGTGTCTTGAGTTCAGTTTTGATCAAGGGATGAATGGTAGCTAGCTAGCAGTCAGAAAA-TTAGCAGTG-GATACAA-----TAGCCAATTG-----------------TGATAAGTGGCTTTTTGTTACATTTGGTAAGTTGTAGAACAGAGGAT---------------------------ATTTCTCTTTCATGTGTATCTTTTGGTGTTCTGTGAAAGGCTATGTACCTAAGTAGGTATGAGAACCT---GAGACTTTCCTGAGCTTTCCTTTACTGTCCAACCCCAGACAACCTGCTGTAATGATACATGTAATGTAGAGGACAGAAATGATGTGATTTCTCAGGCCACCAGTACTTGAGACTGCCTGCCTTAAAGGTGTTTGCTT-GTGTAAACAGCATTACTTGTTTCTTTGGAACAAAATAATTTCTCTTAAGAAAAGGTC-TGAAACACAGTAGCC--TTTCCCAAGGCTGTTGCAACAGAGTGCTGACAGGAAAGGGGAAAGCCAACCAGCTCTAAAATAGGAGTTGGGA---AATAATGTTGGTGTTCAGAGAGACAAACCGATTTGAAGCTCCATAG--TTCTATCTATCTTCTCTGAATTGATCACTACTGATCATCTCTTTCATATCATCTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCATCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCTCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGTCAACAGAAGTGCCCACCCAAGAGCAAGTGAGGGATTCAGCAGTCATCGGGACAAGGGGAAGAGAAGAGAATCTATCTCATGTACTTCCAAAGCAACACCTCCATCTTCCCTCCAAAGGCTGTCATGGGTGAATCCTCTCTACCTGTCACTCCCATTTGCCTGTAATGACCTCTTTTAGGGAAGGCATTTTCCTTAGGTTGTCCTGCCATTTCTCTCATACAGGCTGCTGATTATATGTTCTCAAGTTGTTCAGTGTCCCAAA----TGCTCAGAAAGAATAACACCTGCTGTCTATCCTGTGCACC---CAGAAGATGTTTTCCAAAACTGTCAATT-----------------GTTGT-----------GTTGTCATTGTTGTTTCATTTCCTGAATAAAGCACAA---TCTGCTTAATGGTATTCATGTGTCCATTTTTTT
s HiC_scaffold_1 137760053 1498 - 233722169 TGAATGATAATACAGTTGGTACAGTTTCTGAGTCACCAGGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGT---TTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGACCTAC--CACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTC-TGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTG---ATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAA-----GGAGAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgttttattggtaGATAGTTTGCTGCT-CACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttacaa--atttttcagagttcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGC---CCTTTGGTCTCTA--CCCAGTCTCCCTTT----------------------AGG-------------GACTTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagag-atttttttttgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTC----TAGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATAT-ATTCCTTTCAGATCCTAAGA-TACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------------------CAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCAT------ATCCTGTATTCCT----------TTATCCTGTAA-----TCTGCCTGGGAAGG----TTCCT--GGCAGGTCAACAATCCTTTGTGTAC-----------TGTAAGTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTG-----TCTCCTTTGTCTCCATCAGATGATGTTCTGC----CTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcacttctt-aaTAAAGTACACTTTTTTGTTGCTTGGaa--catatttcctttctttt

a score=3336
s chr3            92352949 50 + 160039680 TCCACAGTGTCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTC
s HiC_scaffold_1 137761064 50 - 233722169 TCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTC

a score=21319
s chr3            92364829 1683 + 160039680 CTAAAAAACAGGAGTGTAAAAAACAGGTTAATGCATCACAGATTGGCAATTAATTGAAATAGAACAAAGAGGACAC---------------AAATTATAATTGATAAAAAAAATATTGTCCTTAAGGA---AGAAAGAGATCTTAGACA---------------ACCAA------------TGTGACCTCACTGAAACTGAATATTGAGTCACAGTGCTCAACAATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGC-AGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAATTTG--TGTCTTTATGGTCTTCCTAGGTGCTGCAGT-----------CAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTACTAATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAG---GTGGT-------TGAA-------------------------------------CAGAGATTATTATTTCTCTTCCCTATGCATTTTTTTTTTGGTGAT----CTTTGAAAGGCCATATACCTCAGCAGGTAGTAGAAACCATG--ATTTTCCTGAAATATCCTTTACTGTCCAACCCCAGATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGT----TTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATT-TCCTTGTGAAAACAACATTACTTATTTAATTGGGGGAAATGTTTCTCTTGGAAAAAAAA---GACAAGAAACAAAGGAGGATTTCT-----CAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAATACAA---AAAGGGTA---------ATGTTGATGCTAGAAAGAGAAATGAAG--CTGATGCT---CAATATCTGTCAATCTTGTATGTGT-----TCATCATCTTTGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTATCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTCA-CCTACTTCCATATCTCAGTGATGACCTCTAATAAGTAATGAATTTGCCCG-AGACTATAAT--------------------CTTGCTGCTGTAAAGGGGCTCTAGAGAATGGGTCTT---GTTCCATTGTTCAGTATGACATTTTTCAAATCTCT-------------CTGTCACTT----GAGCAGGGTAGTTGTTACTGTTGTTTTATTTCCCAAATAAAGTA------CTATGTTTTAATGATATTCTTGTTTCCTTTCTTCAAAACTCATTTTATTACTGTTATGACATGATCATGTTCCTTTGGT
s HiC_scaffold_1 137742276 1781 - 233722169 CTGGAAACTGAGAGAGATGAAAATGGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCAGTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGAGTTATTGTCCTAAAATATATAGAGAGAGCCTTTGAACACGAGTTACAGAATTCACCAAATTCTCTTCATCCATCAGTTCAATGAAACTGAGTCTAAGG---CAGGTTTTCAGAGTCACAAGAACT-GGAGCAGGTTATATCCTATTTTCCAGAGAACCTGTGAAGGTAA---------GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTC-CTTGAGTTG---GGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGG-CTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCATAG-ATGAGTG----TTACTTAGTTGATGAAAAATTAGGACTTGAGCACTCTGGTGTAGTATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCATTATATATCTTCTCCCATTATATGTCTTTTTGATGTC------TTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTCCCTACTGAAACTTCACAG---TATATAA-------------TGATAATTGGAA-----TTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCA-ATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTT--TTGGGGAaaaagatacttttttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCT-TACAGAGAAAATATGTCCTGATATTATGCAGTTTTTGCT--TCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAAA---TGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTG-CCTG-----------------TCACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaagatgaggaaaat-tGGCTCATTTGCTTCTGTAGCAGTTCCT--TCATTTCTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCC---TGCCTGTGATCATTCCTTGCATCTAAACAACTGGTTGGTATGCTATAATGGTTTTTCAACTGTGTCAGCATCGCTGCCTTGAAGGAAGTACAGCAACCATCTCTCTTGGCTCCA----TCAG-ATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGTGTATTTTCTTtggttaaataata--aatattttcttcttttgaaatgtaCTTTATTA--------ACTATATCATGTAATTTTGGT

a score=22788
s chr3            92364989 1482 + 160039680 TGAGTCAC-AGTGCTCAACA--ATGATAATATCCAGGAACAGGATATCTTTAATTCTGTGTAAGCCCAGTCACGCCAGTCATGCATGGATTTGCATTTTGATTGGGAAATTTTAGGACCTGCCCACTATCAGTCGGTTCTGCTCCCACTTGGCTTGACAGACAGTTAGTTATATAAAGAGGTCCTTGGCTGACTGACTGCAGACTCCTGGTACACACGTCCTGGAATACTTTGGAGAACCTGGTGAGTGTCATTTCTTGAATTTGTGTCTTTAT-GGTCTTCCTAGGTGCTGCA------------GTCAGTAAGTGTGCTGAGTTCAGTTT-CAATCATGGGATGAATGGTGTCTATCTAGCAGGCAGAAAATTACTA--ATGATACAATAGTGATTTGTGATGAGTGGCTTTTCCTTTTACTTGGTAGGTGGTTGA-----------------------ACAGAGA--TTATTATTTCT------------------CTTCCCTATGCATTTTTTTTTTGGTGATCTTTGAAAGGCCATATACCTCAGCAGGTAGTAGAAACCATGATTTTCCTGAAATATCCTTTACTGTCCAACCCCAGATGACCTGACAGGATTATACAAGTAACGAAATATATAGGAACTGGAACTGGTTTTCTGGTTTCTCAGGGCACCAGAACTCGAGACTGCCTGTCTTGGAGGTATTTCCTT-GTGAAAACAACATTACTTATTTAATTGG--GGGAAATGTTTCTCTTGGAAAAAAAAGACAAGAAACAAAGGAGGATTTCTCAAGACTAGTACATCAGATTACTGACAGAATAGGGAAAAGTCAGGAAAT-ACAAAAAGGG----------TAATGTTGATGCTAGAAAGAGAAATGAAGCTGATG--------CTCAATATCTGT-CAATCTTGTATGTGTTCATC---ATCTTTGAACACTCTCATCTAATGTCTTTCAGATCCTGAGGCTTCAGCAACAATGTCTTACCAAGAACAGCAGTGCAAGCAACCCTGCCAGCCTCCTCCTGTGTGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCATTCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCCTGCCAGCAGAAGTGCCCACCCAAGAGCAAGTGAAGTCTTCAGCAGTCTTCAGGACAGGGGAAAGAGAAAAGAATCTATTTCATGTCATTCCATAGCAACACCTTA-TCTTCCCTCCAAAGTCTGACATGGATGCAGAAGAATTTTCTCTACCCTTCACCTACTTCCATATCTCAGTGATGACCTCTAATAAGTAATGAATTTGCCCGAGACTATAA-TCTT--GCTG---CTGTAAAGGGGCTCT--------AGAGAATGGGTCTTGT-TCCATTGT-----TCAGTATGACATTTTTCAAATCTCTCTGTCACTTGAGCAG---------------GGTAGTTGTTACTGTTGTTTTATTTCCCAAATAAAGTACTATGTTTTAATGAT--ATTCTTGTTTCCTTTCTTCAAAA
s HiC_scaffold_1 137760081 1473 - 233722169 TGAGTCACCAGGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAG-AATTCCATTTCCCTTTGGTTGG---GGCAGCAAGCCAAATAAAGAAGCTCTCTGATGACCTAC--CACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAG----AACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgtttt--attggtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttacaaatttttcagagt--tcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTA--CCCAGTCTCCCTTTAGGGACTTTACAAG---------------------------------------------ACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagat-ttttttttgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTCT----AGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAAT-AATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATA-TTCCTTTCAGATCCTAAGATACAAGAAA--ATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAA---------------------------GTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGT---------------CTACCTTCA---CAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCAT--ATCCTGTA----TTCCTTTATCCTGTA---------ATCTGCCTGGGAAGGTTCCTGGCAGGTCAACAATCCTTTGTGTACTGTAAGTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAG-ATGATGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcacttctt-aaTAAAGTACACTTTTTTGTTGCTTGGaacatatttcctttcttttaaa

a score=4659
s chr3            92365946 130 + 160039680 TGTCCACCACCAAAGTGCCCAGAGCCTTGTTCTCCCTCGGTGTGCCCTGAGCCTTGTCCTCCTCCA------AAGTGCCCTGAGCCTTGTCCTGAGCCATGTCCCCCTCCCTCA---TTCCAGCAGAAATGCCCTCCTG
s HiC_scaffold_1 137743509 124 - 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCC---------TCCTGTGCAG------CCTCCCTCATGCTGccagcagaagtgcctgcctg

a score=24723
s chr3            92373335 2034 + 160039680 GATCTAAAGAATGCCCAAGATCATCAAGCTC----TACTCTGTAGGG--CATATACTATTTTCTATTGTTCACAGGAAAGCATGTAGTCTAGGCAGGAGATATGAACTGTCTCTTGGAACAGAA-TTATCAAAGATGATGCTGAAATTATAACCTAGAGTCCTTTTAATTCCTTTTTTTCAGCACTTAGGAAAATTTAGTCTAAAAATCCAGACATGTAAATGGGCTTGTGTACCACATAATACCAAGGATTTGAAATAGAAGAACCAGAACAGTT-----GCTCAGAGGAA----------------------------AAAATATATTGAATCAAGAAATAGAACTTGGACAACCAGAGT----GAAAACAACTCAATTTCTGCATCTATCAAATCTTACCGAAACTGAAAAGTC--AAGAGAGCCCTCTGAGTCACAGCACAGAACTAGCAATGATGTCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACTCTCAGTTAGTTCTACATCTACTGGGCTGAGAAGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGCAGAATCCTGGTACTCAGGTCCTACA-CTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCCTGGTCTTCTATGTGATGTAGTTTATTTTGAGAGAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGG----TCAGAAACT----------------TATCAATGCATACCACATACCACT--GTGACAAGTGGCTTTC---------------------------CTTTTCATTTAGTAGGTGCTTGAATAGAGTATATTCCTCTTTGAT-GTACATACTTTGCTGTT------CTTTGAAATGTCATATACTTTAGC-AGGTATGAGAACCT-GAGACTTTCCTGAGATGCCCTTTA--CTGTCCAACCCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAGGATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGATATGTA---AAATAGC-CTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGA--GCATTAAACAAGGAAGGA-----TTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGG-AGTTGG----------GGAATAATATTCATTCTAGGAAGTAGAAATGGATCTGATGTTCATGTGTCCTTCTATCTT--CTCTGTTCTAATCACCC---CTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTACCCTTCATCTTTCA-AATGCCTGTTACATCTCATTATAGGGAAGGCATTTTTCTGAGACTGTAAAACTGTTTTTTTTTCCCCCAATGGAATGCTGAGAATGATCCTCCTTCAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAGTAG--ATGTCCCTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTG-------------------------------------TGTCACGGATGTTCCATTTGCTGAATAAAGTATAATCTTTTCAATGGTGT-TCATGTGTTCTTTTCTTTTAAAACTCACTTTTCTATCTTTGTGATATGCTCATTTCCCTATATTTTTAACCTTTGGTCCACACGTCAATTTATAGCATTTGTGTTTTGATTGAATTTTGAGTCATGGCAAAAATTACTT
s HiC_scaffold_1 137742102 2034 - 233722169 GATTTAAGAAAT-----AGACCAGTGAACTCAGAACACACTGTGAGAATCAGGTACTGTTTTTCTCTGTTCAGAGAAAAAC-TCAAATGCAAGAAGGAGAAGTAAAATGGTGGGGGACACAGAGCTTCTTAGAGATAGAACTGGGA--ACAAATTGCATCATTTGTGGGT----TTTGTTAGCACACTGGAAA-------CTGAGA-----GAGATGAAAATGGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCAGTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGAGTTATTGTCCTAAAATATAT-------AGAGAGAGCCTTTGAACAC---GAGTTACAGAATTCACCAAATTCTCTTCATCCATCAGTTC--AATGAAACTGA---GTCTAAGGCAGGTTTTCAGAGTCACA----AGAACTGG--------------AGCAGGTTATATCCTATTTTCCAGAG---------AACCTGTGAAGGTAAGATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCA-----AACTATG--ATCATAG-ATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCACTCTGGTGTAGTATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAACAGC--ACAGAACAAAATAC-TTCTTCTCCCATTATATATCTTCTCCCATTATATGTCTTTTTGATGTC------TTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTC------------CCTACTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCAATT-TTGAATATGTT-ATATTCCTCCAAATATCACTATTGGGTTTTGGGGAaaaagatacttttttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATG-AAGAGAATTGGTGAAGTAaaaggtaca---------ttttaaaaaatgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTTTTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAAA--TGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGAT-CACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCA------------------CAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATC-AtaaaaagatgaggaaaattGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTTC---TTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCTT---------GCAT----------CTAAACAACTGGT--------------TGGTATGCT----ATAATGGTTTTTCAACTGTGTCA-GCATC-GCTGCCTTGAAGGAAGTACAGCAACCATCTCTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGTGTATTTTCTTtggttaaataataaatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTA---ATTTTGGTTTATTTCAATCTCTTGATCCCTAGATCAGGGTCACGTATTTA-GTACAGTCTGAATTTTGTGTCATGCTAATGATtattt

a score=19892
s chr3            92373718 1693 + 160039680 TCTGAGTCACAGCACAGAACTAGCA----ATGATG-TCAAAGAACAGGACATGCATTACTGAGCAGAGTTCTGATTAAGCCAGTCATGCATGGATTTGCATTTTGGTTGAGAAATTCTTGGTCCTGCCCACT-CTCAGTTAGTTCTACATCTACTGGGCTGAGA-AGCCAGTTCTATAAAGAGATCCTTGGCTGGATGACTGCAGAATCCTGGTACTCAGGTCCTACACTACGTTGGAGAAGCTGGTGAGTGTCATTTCTTGAATTTTTCTGTTTCCCTGGTCTTC-TATGTGATGTAGTTTATTTTGAGA-GAGTAAGTGTAGTGAGTCCAGTTTTAATCATGGCATCATGGCATGAATGTTACCTACCTAGTGGTCAGAAACTTATCAATGC-ATACCACATACCACTGTGACAAGTGGCTTTCCTTTTCATTTAGTAGGTGCTT-------------------------GAATAGAGTATATTCC---------------------TCTTTGATGTACATACTTTGC--TGTTCTTTGAAATGTCATATACTTTAGCAGGTATGAGAACCTGAGACTTTCCTGAGATGCCCTTTACTGTCCAACCCCAGATAGCTTGTTGGGATGATACAGGTAATGATGGGTACAGGAAGTCATTTGAGGATTCTCAGGATGCCAGAACTTGAGATTGCTATTCTTGAAGGAGTTGAT-------ATGTAAAATAGCCTATTTCTTTTACTGAAACAACATATTTCCACCAGGAAAAGAGCATTAAAC--AAGGAAGGATTTCCCAAGGCTGGTGCAACAGAGTGCTTGCAGGAAAGGGTAAACCCAGGATGTCCTAAAACAGGAGTTGGGGAATAATATTCATTCTAGGAAGTAGAAATG----GATCTGAT-GTTCATGTGTCCTTCT--ATCTTCTCTGTTCTAATCAC---CCCTAAGCATTTTGATGTAATGTCTTTCAGATCCTGAGACTTCAGAAAGATGTCATTCCAAGAGCAGCAGTGCAAGCAGCCCTGCCAGCCTCCTCCTGTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCAAAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTGTGCAAACTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAGAGCAAATGAGCATGGCAGCAATCTTCAGAACAAGGGGAAGAGAAGGGAATTTATCTATTGTCCTTCCATACCAATACTTCTATCTTCCATTCAAAGGACATCTTGGATGCAAATGAATCTTCTCTACCCTTCATCTTTCAAATGCCTGTTACATCTCATTATAGGGAAGGCATTTTTCTGAGACTGTAA------AACTGTTTTTTTTTCCC---------CCAATGGAATGCTGAGAATGATCCTCCTT------CAATAGATTCATATACCAGATGTTCAGAGGAAAGACTAGTAGATGTCC-CTCAGTGCCTTCACAGTATGGTTTCCAAATCTGTG--TGTCACGGATGTTCCATTTGCTGAATAAAGTATAATCTTTTCAATGGTGTT-----CATGTGTTCTTTTCTTTTAAAACTCACTTTTCTATCTTTGTGATATGCTCATTTCCC-TATATTTTTAACCTTTGGTCCACACGTCAATTTATAGCATTTGTGTTTTGATTGAATTTTGAGTCATGGCAAAAATTACTTAGTGTTTGGTTGCTTGAAGGACATATTAGTTCATTTCACAAA
s HiC_scaffold_1 137760079 1620 - 233722169 TCTGAGTCACCA---GGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAG--AATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGACCTAC--CACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCT-GTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCA-----AATTACG--ATCATGAGATTCATGGTATTTACTTAAGG----AGAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgtttta--ttggtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttacaaatttttcagagttcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTA--CCCAGTCTCCCTTTAGGGAC--------------------------------------TTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagatttttttt----tgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTC----TAGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAAT-GTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATAT-ATTCCTTTCAGATCCTAAGA-TACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGT------------------CATAACTCTG----------AAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCT------------GAGCTGTGTCTACCTTC------ACAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCAT------------ATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGGTCAACAATCCTTTGTGTACTGTAAGTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTG--TCTCCTTTGTCTCCATCAGAT----------GATGTTC--------------TGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcactt-cttaaTAAAGTACACTTTTT----TGTTGCTTGGaacatat-ttcctttcttttaaaatac---ttattagcaatat-atttgctaattttttacatttattaaatttctagttCA------GATTCCTCCCAAGTA-GTATGGTTTAAATTTGGATTCATACCAAAAGTTATTC----CCTTATTATTTCAAAATCAtggtattttctttcattaa

a score=5087
s chr3            92374687 134 + 160039680 GTTATGCCCACCACCAAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCTGAGCCTTGTCCTCCTCCA------AAGTGTCCTGAACCTTGTCCCGAGCCATGTCTTCCTTCTCCATGCCAGCAGAAATGCCCTCCTG
s HiC_scaffold_1 137743505 128 - 233722169 GCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCCT----CCTGTGCAG--------CCTCCCTCATGCTGccagcagaagtgcctgcctg

a score=13676
s chr3            92385296 1816 + 160039680 GGAAATATGTGCTATAAAATGACAAACAGCTAAAGTAGG-----TGCTTTTTTTTT----TTTA---GATCCAGCAAAGATTAAAGAGATAGTGTCAAAAAACA-AGAAAGAAAAATTTTAACAACCAATTATACCACCTTTACCCCCACAAGCTTTTCCAACTACAACAAAATACTAAAACTGAGAAAGAAGGGATGGTCTCTGAGTCACTGCACTTTACCCAGTGACTATGTGTCCAGGAACAGGATATTTCCTATTTTTGAGAGTCCTGGTTAGGCCAGTTAAACACAGATTTGCATTTTGGTTATGAAATTGTTGGATGA-TGCTACAATGAATTGTCTTTACAACCTACAGGGCGGGGCAGCCAGTCTTATAAAAAGGTGCTTGGATGAATAACTACAAGACACTTGGTACTCAAGCTC---TGGACTAAGGAGAACCTGGTGAGTCTGACTTCCCAAATTGATTTGTGCTTATGCTTTCTCATAT----ACTTTCATTTGAAGA-----GACATGGTGGTTCCAAACTCTGAGCAAGTGTAAAATGTTAGGTACTgagctggagacatggatgagtgattagagcactattctcttccagaggttctggtttcagttcctaacaaccacatggtgacctgtactgctatctgatgccctctcttgatatacaggcatttaaacagatacaactctcatagacattaaaaaaaaaaaactttcaagaaaaaTGTTAGCTACTGACTGGCCTGAATTTAAGCTGTGTAGTAAAGTGACACACACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGGTTGATGCCCATATGGAAAATCACGGCAATCAGAATGGTTGATTTGAAAAAGATGTCAGAACATTGAATTTTCATTTTCTTACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAG--CAAACATTAGAC--TTTTAATTTTCCTAGACATCCCCCAATGTGAACCCTATCCTTT---TGGATTTCACAGTTGCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTTGTATAAGCAATGTTACCCT--GTTCTTTGATAAAGAGTTATTTCCC-----AATGTGGGGTATGTAACCAAAGAAGG----CCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAGGAACATAT-AAGAAGTGCTAATAGGAGAAGTATTGGGGGGG---TTAATGTGTATATATTAGAGAATTACTATTCAATATTCTATAAACTTGAGCTTTCTATATATG--AGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTC-----ATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCTCCAT-GTGCCTGTGATAACTCCT
s HiC_scaffold_1 137742300 1491 - 233722169 GGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCAGTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGAGTTATTGTCCTAAAATATATAGAGAGAGCCTTTGAACACGAGTTACAGAATT--------CACCAAATTCTCTTCATCCATCAGTTCAATGAAACTGAGTC-TAAGGCAGGTTTTCAGAGTCAC------------AAGAACT---------GGAGCAGGTTATATCCTATTTTCCAGAGAACCTGTGAAGGTA---------AGATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTT--GAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCAT-----AGATGAGTGTTACTTAGTTGATGAAA--AATTAG-GACTTGAGCACT-----------------CTGGT-----------------------------GTAGTATtggcttatttctctttctgttaggTA---------ACACATGGTATCCACAT-GAAATTAAAAGACAATAA--------------------------------------GAAGTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCATTATAT--------------------------------------------------------------------------------ATCTTCTCCCATTATATGTCTTTTTG---------ATGTCTTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATA------GGTGTTTATTCTGTTCCCTACTGAAACTTCACAGTATATAATGATAATTGGAATTTCTTGTGAGAT-GCTCAAGATTTCTGCCCCTTTGGCTGCAATT-TTGAATATGTTATATTCCTCCA--AATATCACTATTGGGTTTTGGGGAaaaagatacttttttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgc-aattgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTG----ATATTATGCAGTTTTT-GCTTCTTATCTCTGTAGGAATCCTTTTTTCTGA----ACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACA------------------------------------------------------ACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCA------------------------------------------------------------CAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaagatgaggaaaa------ttGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTT---CTTCAGTGCCCAAC----ATATCAACAGAACAATCTTCTTCGTCTTTTAGCCTATATCCTGCCTGTGATCATTCCT

a score=16115
s chr3            92385475 1872 + 160039680 GGGATGGTCTCTGAGTCACTGCACTTTACCCAGTGACTATGTG----TCCAGGAACAGGATATTTCCTATTTTTGAGAGTCCTGGTTAGGCCAGTTAAACACAGATTTGCATTTTGGTTATGAAATTGTTGGATGATGCTACAAT---GAATTGTCTTTACAACCTACAGGGCGGGGCAGCCAGTCTTATAAAAAGGTGCTTGGATGAATAACTACAAGACACTTGGTACTCAAGCTCTGGACTAA---GGAGAACCTGGTGAGTCTGACTTCCCAAATTGATTTGTGCTTATGCTTTCTCATATACTTTCATTTGAAGAGACATGGTGGTTCCAAACTCTGAGCAAGTGTAAAATGTTAGGTACTgagctggagacatggatgagtgattagagcactattctcttccagaggttctggtttcagttcctaacaaccacatggtgacctgtactgctatctgatgccctctcttgatataca-ggcatttaaacagatacaactctcatagacattaaaaaaaaaaaactttcaagaaaaaTGTTAGCTACTGACTGGCCTGAATTTAAGCTGTGTAGTAAAGTGACACACACTATTAGGTTGTTTTTGCTTTGATGTGTAGGTGGTT-GATGCCCATATGGAAAATCACGGCAATCAGAATGGTTGATTTGAAAAAGATGTCAGAACATTGAATTTTCATTTTCTTACATTTTGTTGCCCTTTACAAAGGCTTATGTCTTAGCAAACATTAGACTTTTAA----TTTTCCTAGACATCCCCCAATGTGAACCC--TATCCTTTT--GGATTTCACAGTTGCTGATAGTAATAATGATTGGTTTTGAAATTACTTATGGTTTCAGAAAGTGGGTTTGATATTCTTGAACACATTATTTT-GTATAAGCAATGTTACCCTGTTCTTTG--ATAAAGAGTTATTTCCCAATGTGGGGTATGTAACCAAAGAAG-GCCTTTCAAAATTAAGTGAAACAAATCACTAAATTGGAAGGAACATATAAGAAGTGCTAATAGGAGAAGTATTGGGGGGGTTAATGTGTATATATTAGAGA-----ATTACTATTCAATATTCTATAAA---CTTGAGCTTTCTATATATGAGAATCACATCTTCTGAGAGAAAACTGTCATGTAATCTTTTTCAGAACCTAAGACTTCAGCATAATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCTCCTGTGTGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTTCTGTGCAACCTTCTCCACCATGTCAACAGAAGTGTCCACCCAAGAACAAATGAGGTCCTCAGCAGTCATCATGACAAGGGGAAGAGAAGAGTATCCATCTCATGTACTTCCATAGCAACACCTCCATCTTCCCTCCAAAGCCATTCATGGATGCCAAGAAACCCCTGTACTTCAGCCTTCCACCT-CCATGTGCCTGTGATAACTCCTGAAAGGAAAGTCATTTCCCTGTTTTTGCTGTCAAGCAGATACTGAGAATAGTCCTTCCTCAGC-GCTTCACTGTCCCAGA----TGCTCAGAAGGAAGAGTTGCAGCAGTCTACCCTGTTCCCACCC-AGGACATTTTTCAAATCTTTCTGAC-------------ATTTTGCCA--TAGTAGTGGTCATTGTTTCTTATTTCCTGAATAAAAAGAACAATCTTGTTGATTGTATGCATGTATGCTTTCTTCTAAA
s HiC_scaffold_1 137760070 1484 - 233722169 GGTACAGTTTCTGAGTCACCAGGAATTAAC-----ATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAGAATTCCATTT----CCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGAC---CTACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGTTGGTCTTCT----------------------------------------------------------TAGGTATTGAACT---------------TAACCAGGACATAAGACAGTTTGATGGGATCAAATT----------ACGATCA-----------------------------------TGAGATTCATGGTATTTA--------------------------------------CTTAAGGAGAACTTATCACTA-------------------------TGATACAACCATATAATGTATtggcttgcttttgttttattg-gtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTT--CTGTTATAACAGAacaa-gatttttcttttacaaatttttcagagttcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGC--CCTTTGGTCTCTACCCAGTCTCCCTTTAGGGACTTTACAA---------------------GACTTTGAAA---CTTGTGGCTGC---------------TTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagatttttttttgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTCTAGTGGGAGAAGC---CAGAAAGTTGTAAAAAGGGA----TTTGAGACTCAAGAATGT-TCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattt-tctgggGAAATCCCTAATTTTGA----ACATTGTCATATATTCCTTT-CAGATCCTAAGA-TACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------------------------------------------------------------------------------------------------------------------CAACAGCAATGTC---CTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCATA-------------TCCTGTATT----CCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAGGTCAACAAT---CCTTTGTGTACTGTAAG---------------------TCCTCAGCTGTGTCTGTATCACAGCCCTTTGCT---AAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGATGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcacttcttaaTAAAGTACACTTTTTTGTTGCTTGGa-acatatttcctttcttttaaa

a score=3782
s chr3            92386682 100 + 160039680 TGCCCACCCCCTCAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCA------AAGTGCACTGAGCCTTGT----CCTCCCCCAAAGTGCC
s HiC_scaffold_1 137743509 106 - 233722169 TGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCCT----CCTGTGCAGCCTCCCTCATGCTGcc

a score=4551
s chr3            92386717 180 + 160039680 CCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCA------AAGTGCCCAGAGCCTTGT----CCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTCCCCCTCCCTCATACCAGCAGAA
s HiC_scaffold_1 137743490 183 - 233722169 CTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCC----TCCTGTGCAGCCTCCCTCATGCTGccagcagaagtg-cctgcctgaaa--GCAATCAAGAATGTCAGGATTCCTCAGATCAtaaaaa

a score=4768
s chr3            92386770 85 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCC
s HiC_scaffold_1 137743489 85 - 233722169 CCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACC

a score=4841
s chr3            92386797 78 + 160039680 CCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCCCAGAGCCTTGTCCTCCCCCAAAGTGCACTGAGCCATGTC
s HiC_scaffold_1 137743489 78 - 233722169 CCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCC

a score=12157
s chr3            92397941 1267 + 160039680 CAGACTTCTGGTCCTTTACTCCTGGATTACTTTGGAGAACCTGGTGAGCGTCATT-CTTGAGTTGGTCAGGTTTTATGGTCTTCGTATGCGTTATCATAAATTTTGAGAGAATATA-TGTGGTGAG-TCCATTTTTGATCAGGAGATGAACAGTACTTACCTAG---------------------CAGCCAGAAATGGATATAATAGTCCACTGT---------GGTAGATGATTTTCCCTTTTAGTTGGTGAATAGTGTGACAGAGTAC---------------------------ATTACTATTTCACAGGCATATTTTGGTGTTATTTTCAAAGACACAGGCCTT-TCAGGTATTATTAAAA----CTTGAATTATT--------CTTTATGGCACAAACCCAGTCAACCTGCTTGAATGCTACAAACAGAGACTTTTATTGGTTCTGAGACTGCTTACATTTCCAGAACCTGAAACTTCCTGCCTGGT-----------GTTCCTTTGTGTAAGTAGTCTTATTTATATTCTCTTCAAAAAAAAAAAAGGTGGAATAAACAAAGAAGGGATTCCAATGTTATTGAAACAGATTCCTGTCAGGAAAGAGAAAAGCTGGGATATCATAAAATAGAGTTGAGGAATAATGTGAATGCCTGGAGAAAGGAATGAACCTGTGT-------TCCAAGTCTC----AATCTTCCCT----ATATTGATAACCTGTGAACACTCTTATGCAACATCTTTCAGATCCTGAGAATTCATCACAATGTCTTACCAACAGCAGCAGTGCAAGCAGTTCTGCCAGCCTCCTCCATCCACCACAA-----AGTTGTTCAGAGCCCTGTCCTCCT-CAAAGTTCCCTGACCCTTGTCTTTCTTCCTCTTGAAGCAGAAGTGGCCT--------CCTCCAGTTTTGCAAAGAAAAGTGCCCACCAAAGAACAAGTGAGAGATTCAACCATCATCAGGACCAAGAGACAAGAAGTAAATTGATCTCAAATACCTCCATAGAAATACCTCCATCTTCCCTTCAAAACCTCTAATGGATGCAAAGGAATTTCCCCTGATATCATTCTTCC--TCATATGCCTGTCATGATATCTGATAGAGAAGAATTTACGTGAGACTGCAATGCTGCTGCTGTCAGGGGGCCACTGAGAATGGTCCTTCTTCAGTGGTTCAATATCTCAAGATTACAG---------AGGGAAGACCAGAAAATGTCTCCTTAGTGTCCAT-AAAGGATATCTTAAAATATCCCTATCACT--TGGACAG---------------GGTAGTTACCATTGTTGTTTCATTTACTGAATAAAGT--ATTGCTTTGTTGATGGTATTCATGTTTTCTTACTTCTAACAGTTGCTTTATTACCATTAT
s HiC_scaffold_1 137760274 1297 - 233722169 CACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGT-TGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAGAACTTATCACTATGATACAACCATATA---ATGTATtggcttgcttttgttttattggtaGAT-AGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttacaa--atttttcagagttcttttaaaaaatttatgtctTAGCAG------TTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTACCCAGTCTCCCTTTAGGGACTTTACAA-----GACTTTGA---AACTTGTGGCTGCTT----TTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagatttttttttggg--------AAAATGACATAAGATGAAAGAAAC------GTTTTCCCAAATCTGATAAAGTAAACTGTTCT----AGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTT-TGAACATTGTCATATATT-CCTTTCAGATCCTAAGA-TACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTC-----ACAACAGCAATGTCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCATA----------------TCCTGTATTCCTTTATCCTGTAATCTGCCTGGGAAGGTTCCTGGCAG----------------------------------GTCAACAATCCTTTGTGTACTGTAAGTCCTCAGC-------TGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGATGTTCT-GCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcactt-cttaaTAAAGTACACTTTTTTGTTGCTTGGa-acatatttcctttcttttaaaa--tac-ttattagcaatat

a score=22901
s chr3            92407627 1627 + 160039680 ACACCTAAAA--GACAGGAACATAAATGGGCCAATGCACCATAGGATACCAATTAGTTGAAATAGTACAAA----------------------GAGGACACAAGTTGAAATAGAAAGAAATAATGTCTTTAATCA-ATAAAGAGAGC--TTAGACA---------------------------------ACCAGTGTGATCACACTGGATTTGAAGACAGAAGGGCTCACTGAGTCACAGGACTGAACAATGATGATGTCCAGGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCCTTCTATCAGTCACAAGTGCTTCCATTAGGCTGGACAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGTCTTAATGGTCTCTCTGTGGGCTGTAGTAAGTTTTGAAGAAGTAAGTTTTTTGAATATGGTTT-TGATCATGGCTTGGCTGCTACCTATCT----AGCAGTCAGAAATTTAGCA------------ATGGA------------TCTACTAGTCAACTTA-------------------------GACAAGTAGCTTTTTCTTTCATTTGGCAGGCAGTT--GAACATAGTACATTTATCTTTCAT-ATGCATCATTTGGTGTT------CTTTGAAATGTCATATAACTTATGCAGGTATTAGACC--TGAGATTTTCCTTAGCTGTCCTTTATTGTACAAACTCAGACAACCTACTG-----TCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGC--TTGACTGCCTATCTTGAAAGTGTTGC-TTTGTGTAAAGA-CATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGA-----TTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAG---------AAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGAATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTGGGGATCAGCC---CTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACAGATGCAGAAGAATTTGCTCCACATAGCACCTCCTTCTACATGCCAGTGATTATCTCTGA----TAGGGAAGGCATTAACCTGAGATGATAATCCT-----------------GCTGCTGTAAAGGGCCTGCAGAGAATGATCCTTCTTGCATGGTTCAGTAGACCATTTTTCAAATCTCT---------------CTGTCACTTTGGCAAGCTAGA----TCTCACTGTTTTTTCATTTCCTGAATAAAGT
s HiC_scaffold_1 137742273 1708 - 233722169 ACACTGGAAACTGAGAGAGATGAAAATGGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCAGTTTTAACATTCAAGGGAGCTATAAGATGG----GAAGGAGTTATTGTCCTAAAATATATAGAGAGAGCCTTTGAACACGAGTTACAGAATTCACCAAATTCTCTTCATCCATCAGTTCAATGAAACTGAGTCT-AAGGCAG----GTTTTCAGAGTCACAAGAA-----------------CTGGAGCAGGTTATATCCTATTTTCCAGAGAACCTGTGAAGGTAA---------GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGGCTTCTCAG-GTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCATAGATGAG-TGTTACTTAGTTGATGAAAAATTAGGACTTGAGCACTCTGGTGTAGTATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCA--------ACAGCACAGAACAAAATACTTCT-TCTCCCATTATATATCTTCTCCCATTATATGTCTTTTTGATGTC------TTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGT----TC------CCTACTGAAACTTCACAGTATATAA--TGATAA---TTGGAATTTCTTGTGAGATGC-TCAAGATTTCTGCCCCTTTGGCTGCA-ATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAaaaagatacttttttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTG-ATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgca------attgaAAGACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTT----TTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCC--------TGTCACC----------ACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTC-AGATCAtaaaaagatgaggaaaattGGCTCATTTGCTTCTGTAGCAGTTCCT----TCATTTCTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCGTCTTTTA--GCCTATATCCTGCCTGTGATCATTCCTTGCATCTAAACAACTGGTTGGTATGCTATAATGGTTTTTCAACTGTGTCAGCATCGCTGCCTTGAAGGAAGTACAGC-AACCATCTCTCTTG---GCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGT

a score=21301
s chr3            92407796 1247 + 160039680 CTGAGTCAC-AGGACTGAACAATG-ATGATGTCCA-GGAACAAGGTATTTTCTATTCTGTAGAGTCCCAGTCAAGCTAGTCATGCGTGGATTTGCATTTTGGTTGGGCAATTCTTGGACCTGCCTTCTATCAGTCACAAGTGC--TTCCATTAGGCTGGA-CAGCCAGTCTTATAAAGAGATCCTTGGCTGGTTGTCTGC-AGACTCCTGGTATTCAAGTTCTAGACTACTTCGGAGAAGTAGGTGAGTGTTGTTTCTTGATTTGGTCTGTCTTAATGGTCTCTCTGTGGGCTGTAGTAAGTTTTGA-AGAAGTAAGTTTT-TTGAATATGGTTTTGATCATGGCTTGGCTGCTACCTATCTAGCAGTCAGAAATTTAGCA--ATGGATCTACTAGTCAACTTAGACAAGTAGCTT--TTTCTTTCATTTGGCAGGCAGTT------------------------------GAACATAGTAC--------------------ATTTATCTTTCATATGCATCATTTGGTGTTCTTTGAAATGTCATATAACTTATGCAGGTATTAGACCTGAGATTTTCCTTAGCTGTCCTTTATTGTACAAACTCAGACAACCTACTGTCATGATATAGAGAGTGAAAAGTTCTGGAATTGGTTTTGAGATTCCTCAGGGCACCAGAGCTTG--ACTGCCTATCTTGAAAGTGTTGCTTT-----GTGTAAAGACATTGTTTGTTTCATTGGAATAAAATGTTTTCTCCTGAAAAAGAAGGTATGATTCAAAAAAGGATTTTTCAAGGTTACATGCAACAGATTACTGACAAGAAAGAAAAAAGCCAGAGTCTACTAAAACAGGATTTGAGGAATCATGTTTACGGCCAGAGAGAGAAAAGA-ATGATAAAATGATGTTACAAGTCTCTATCAATCTTGGTGGGGA-----TCAGCCCTGAACACTTTCATGTAATTTCTTTCAGATCCTGAGAATTCAGCACTATGTCTTACCAACAGCAGCAGTGCAAGCAGCCTTGCCAGCCTCCACCTGTGTGCCCACCCAAGAAGTGCCCTGAGCCTTGTCCTCCTCCACAGTGTCCTGAACCTTGTCCTCCTCCAAAGTGCCCTGAGCCTTGTCCTGAGTCATGTCCCCCTCCCTCATACCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAGAAGTGCCCACCCAAAAGCAAGTGAATGCCTCAGCATTCATCGAGACCAAGAGAAGAAGAGGAACTCCATCTCACATGCCTCCATAGCAACAACTGATGTCTTCCCTTCAGAGTCTGTCACA
s HiC_scaffold_1 137760080 1204 - 233722169 CTGAGTCACCAGGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGT---TTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCT---CTGATGACCTACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCT-GTTGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGA----GAACTTATCACTATGATACAACCATATAATGTAT-----tggcttgcttttgttttattggtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttaca--aatttttcagagttcttttaaaaaatttatgtctTA-GCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTT-TGGTCTCTACCCAGTCTCCCT---------------------------------------TTAGGGACTTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAG---CATTACCAAGTTCTTTGgcatagagatttttttttgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTG-ATAAAGTAAACTGTT----CTAGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAG-ACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCATATA-TTCCTTTCAGATCCTAAGA-TACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATAACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCTTCA---------------------------------------------CAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGC-TTTTCTCTTCAAAGGCTATCATA

a score=20092
s chr3            92417745 1785 + 160039680 ATGTAAATGGGCAAATGCACAACAGAATGCCAATGAGTTGAAGTGTAACAACTAGGACACAATT---------------TGTAATACAGAAAAAAAATATGTTTGTAATCAAAAAAGAAAA---CTTAGACAACCAGTAAGAAAACTC--CACACTTTGTGCATCTATCAGATCTTACTGAAACTGTAAA-AAGGGGGATTACCTGCTGAGTCACAGCACTGAATCAGTGATGTCCAGGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAGTTCTATAAAGAGGTCCTTGGCTGCATCGCT-TTGTATTCCAG---------TCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCTTTATGGTCTTCCTATGTGCTATAGTCAATTTTGAGGGAGTAAGCATCCTGAATCTAGTTTTTT-TCATAGGATGAACTGTACCTACCT----AGCAGTCAGAAATTTGGCA-------ATAGA--TAAATAACTTTTCATTTTATTAGGTAG------------------------------------------GTGGTTGAACAGCGTACA---------TTTCTCTTTCAT-ATACAT---------TTATGGTGTTCTTTAAAAGTCATATACCTTAGC-AGATATTAGAACCTGG-GATTTTCCTCACATGTACTTTACTGTCTGACCCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTTTGTTCAGGACACCAGAACTTGAGACT----TCTTGATGATGTT-TCTGTGTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAA--TGACATAATGCAGGATTTCT-----CAAGGTTACTGAAACATATTGCTGACAGGAAAG-------TGAAAAACCACGATATTTAAAACAGAAGTTGAGGGATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCA-AGTCTCCATCTATCTACTCTATTGA-----TTACCCTTGAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAACCTGTAATGGATT--CAAAAGAATCTTCTCCAACATTCCTCCACCATATGGGTCTTAAGACACAGGCACTTGGATACTATTTGCATGCTGTTATCAAAAGACT-GTTG-------AAAATGGCCCTTCTTTAGTGTCATTATCACAGATGCTCAGAGGGAAGATCAGATGTCTTCTC----AGTGCCCTCAAAGAATGTTTTCCAAATCTG-------------------------------------ATTGTCACTGGTGTTCTATTTCCTGAATAAAGTACAATCTTATTAATGGTAT-TCATGTGTTCTTTTCTTCTAAAACTCACTTAACTGCCTTCATAGTATGCTTATGTTTCTTTGTTTTTATCCTTTGATCCACAAGTCA--GTCA-GTACCAATTATATTTTTACTTTGGGATCATAACAATAATT
s HiC_scaffold_1 137742292 1840 - 233722169 ATGAAAATGGATTTATGTACTGTGAGATATTATTCAGCTAAAGTGGAACAAATGCATCAGTTTTAACATTCAAGGGAGCTATAAGATGGGAAGGAGTTATTGTCCTAAAATATATAGAGAGAGCCTTTGAACACGAGTTACAGAATTCACCAAATTCTCTTCATCCATCAGTTC--AATGAAACTGAGTCTAAGGCAGGTT---TTCAGAGTCACAA----GAA-----------CTGGAGCAGGTTATATCCTATTTTCCAGAG---------AACCTGTGAAGGTAAGATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCTCATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTT----------GTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGG-CTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCATAG-ATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCACTCTGGTGTAGTATtggcttatttctctttctgttaggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAAGTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCATTATATATCTTCTCCCATTATA-TGTCTTTTTGATGTC------TTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATT--CTGTTCCC--------TACTGAAACTTCACAGTATATAATGATAATTG---GAATTTCTTGTGAGAT-GCTCAAGATTTCTGCCCCTTTGGCTGCAATTTTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAaaaagatacttttttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATGAAGAGAATTGGTGAAGTAaaaggtacattttaaaaaatgcaat---tgaAA--GACTATTAGAAAGAATATTAATTCTTACAGAGAAAATATGTCCTGATATTATGCAGTTTTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAACATTACCA-TACAATTTCTTTCAGATTTGGAGACCCCAGAA--ATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCT--------------------------CAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCT------GTCACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTC-AGATCAtaaaaagatgaggaaaattGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTT----CTTCAGTGCCCAACATATCAACAGAACAATCTTCTTCG----TCTTTTAGCCTAT--ATCCT---------GCCTGTGATCATTCCTTGCAT-------CTAAACAACTGGTTGGTATGCTATAATGGTTTTTCAACTGTGTCAGCATCGC---TGCCTTGAAGGAAGTACAGCAACCATCTCTCTTGGCTCCATCAGATGATGTCTTCCATGACTGTGATAGCAACTAAGCAGTGATTTCTTCCAGCTGGGAAATTGAAACTTTTCTTTCAGTTCCTGAATAAAGTGTATTTTCTTtggttaaataataaatattttcttcttttgaaatgtaCTTTATTAACTATATCATGTAATTTTGG---TTTATTTCAATCTCTTGATCCCTAGATCAGGGTCACGTATTTAGTACAGTCTGAATTTTGTGTCATGCTAATGATt

a score=17642
s chr3            92417961 1589 + 160039680 GGAACAGGATATTTCAAATTCTGTAGAATTCTGGATAAGCCAGTTGGGCATGGATTTGCATT--GGTTGGGAAATTCTTGGACCTGCCCACTATTAAATACTTCTATTCCCACTGGGCTGGGCAGTCAGTTCTATAAAG---TTCTATAAAGAGGTCCTTGGCTGCATCGCTTTGTATTCCAGTCCTGATCTACTTTAGAGAAATTCGTGAGTGTTATTTCTTGAGTTGTTCTGTCTTTATGGTCTTCCTATGTGCTATAGTCAATTTTGAGGGAGTAAG-CATCCTGA----ATCTAGTTTTTTTCATAGGATGAACTGTACCTACCTAGCAGTCAGAAATTTGGCA-------ATAGATAAATAAC-----------TTTTCATTTTATTAGGTAGGTGGTT---------------GAACAGCGT-----------------------------------ACATTTCTCTTTCATATACATTTATGGTGTTCTTTAAAAGTCATATACCTTAGCAGATATTAGAACCTGGGATTTTCCTCACATGTACTTTACTGTCTGACCCCAGATAACCTTCTGGGATGATATAGTTAATAAAAAGGAGGGCATGAATTGGTTTTGAGTTTGTTCAGGACACCAGAACTTGAGACT-----TCTTGATGATGTTTCTGT-GTAAAAACAACCTTATTTGTTTCATTAGAATAAAATAGTTTATCCTAAGTAAAGTAATGACATAA--TGCAGGA-----TTTCTCAAGGTTACTGAAACATATTGCTGACAGGAAAGTGAAAAACCACGATATT-TAAAACAGAAGTTGAGG---GATAATGTTCATATAAGGAGCAAGAAATGGACCAGATGTTCCA----AGTCTCCATCTATCTACTCTATTGAT---TACCCTTGAACACTCTTAATTTCATCTCTTTCAGATCCTGAGATTTCAGCACTATGTCTTACCAAGAGCAGCAGTGCAAGCAGGTTTGCCAGCCTCCTCTTGTGTGCCCACCCCGAAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCAAAGTGCCCTGAGCCATGCCCACCTCAGTCATGCCAGCAGAAATGCCCTCCTGTGCAACCTCCTCCACCATGCCAGCAAAAGTGCCCACCCAAGAGCAAATAAGGGCTTCAGTAGTCTTCAAAACCAAAAGAAGAGAACAGAATCCATCTTACATAAGTCCATAGCAACACCTCCATCTTCCATTTAAACCTGTAATGGATTCAAAAGAATCTTCTCCAACATTCCTCCACCATATGGGT--CTTAAGACACAGGCACTTGGATACTATTTGCATGCTGTTATCAAAAGACTGTTGAAAATGGCCCTTCTTTA---GTGTCATTATCACAGA----TGCTCAGAGGGAAGATCAGATGTCTTCTCAGTGCCC-TCAAAGAATGTTTTCCAAATC-----------------------------------TGATTGTCACTGGTGTTCTATTTCCTGAATAAAGTACAA--TCTTATTAATGGTATTCATGTGTTCTTTTCTTCTAAAACTCACTTAACTGCCTTCATAGTATGCTTA-TGTTTCTTTGTTTTTATCCTTTGATCCACAAGTCAG-TCAGTACCA---ATTATATTTTTACTTTGGGATCATAACAATAATTTTAATAACATAATTTTGAAA
s HiC_scaffold_1 137760116 1561 - 233722169 GAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGTTTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGA---CCT--ACCACATT-CCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGT-TGGTCTTCTTAGGTATTGAACTTAACC---AGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGA----GAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgttttatt-ggtaGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTATAACAGAacaagatttttcttttacaaatttttcagagttcttttaaaaaatttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTA--CCCAGTCTCCCTTTAGGGACTTTA------------------------------------------CAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagag--atttttttttgggAAA---ATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTC----TAGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGAGAGCAATAATATGATGTAATAGTACAtaagatttttgaaatattttctgggGAAATCCCTAATTTTGAACATTGTCA--TATATTCCTTTCAGATCCTAAGATACAAGAAA-ATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGG----------------TCATAACTCTG----------AAGTGCCCTGAGCCATGCCCACCT---------------------------CCAAAGTGCCCTGAGCTGTGTCTACCT---TCA---CAACAGCAATG---TCCTGTGCAACCTCCCCAATGCTGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAA--------GGCT--------ATCATATCCTGTATTCCTTTATCCTGTAATCTGCCTGGGA---AGGTTCCTG----------GCAGG------TCAACAATCCTTTGTGTACTGTAAGTCCTCAGCTGTGTCTGTATCACAGCCCTTTGCTAAGGAAGAGCAGCAACTGTCTCCTTTGTCTCCATCAGATGATGTTCTGCCTATCCATTTGGCTTCTGGGCAACGAATTTTCCCACCTGATAGTTGTaacttttctttcacttctt-aaTAAAGTACACTTTTTTGTTGCTTGGa-acatat-ttcctttcttttaaaa--tactta------ttagcaatatatttgctaattttttacattta---ttaaatttctagttCAGATTCCTCCCAAGTAGTATGGTTTAAATTTGGATTCATACCAAAAGTTATTCCCTTATTATTTCAAAA

a score=4768
s chr3            92418881 133 + 160039680 AAGTGCCCAGAGCCCTGTCCTCTGCCAAAGTGCCCCGAGCCTTGTCCTCCTGCAAAGTGCCCAGAGTCCTATCCACTGCCA------AAGTGCCCTGAGCCATGC--CCACCTCAGTCATGCCAGCAGAAATGCCCTCCTG
s HiC_scaffold_1 137743494 139 - 233722169 AAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCTGTCACCACAAAAGAAATGCCCT--CCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctg

a score=17210
s chr3            92432359 1345 + 160039680 GAAACTGAGAAAGAAGGAATGTCCTCTGAGTCACTGTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACATCCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTAC---AGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTATTTATGGCCT-TCTGGCAT--ATTTTAAATTGTAGA-AGCAG-TTTGGTGCTTCCAAATTGGTATCATGGATTAA-ATCAC--AGTT----ATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTGT----TGATGCCTATA-GAAATACCAAGACAATAGGGAAGGGTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGCATTTTGGTGCCCTTTAAAAAAGACTT--ATGTATTAG--CAGGCATTAGACTTTTGTA--TTTTCTCAGGAGTCCTTTTATAAGAACCCTAAATTCTGGAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGA-----TTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTAT-TTTTTGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCT-----GGATATGGGGTATGTAACCAAACCAGGACT-----TACAAAGTTAAAGGAAAAAAAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTG-------GGGGATTAATGTGTGTGTATGAGAGAATTACAATGCC---ATATTCTAAAATCTTGAGCTGTT---TCTATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGACATCATAA-TGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAA---------GCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCCTGTCCTGGAGGCACCA---TGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGA-GAAGAGAATCCA-TTGTGTACTTCCATAACAACACCTCTA--TCTTCCCTTCACAACCTCTCATGGATGCAGAAGAATCTTCTCCACCCTTCACCCCCCTTCCATGCGCTAGTGAT-ATTCTCTG
s HiC_scaffold_1 137742469 1324 - 233722169 GAAACTGAGTC-TAAGGCAGGTTTTCAGAGTCACAAGAACTG-------------------GAGCAGGTTATATCCTATTTTCCAGAGAACCTGTGAAGGTAA---------GATTTGCATTTTGGACAGGAAATCTTGGGGCCAGTTCTGTGTTAGACAGTTCT-CATTTCCTTGAGTTGGGCAGAAAGTCCTATAAAGTTGTCCTTGGATGCAGGGCTGCTAAACTTCAGCTACCAGAGTTTGCATCTGCTTTGGAGATGCTGGTGTGTCTGATTTCTTGAGTTTGGCTAGTTTTTTGGCTTCTCAGGTGTTGAATTTAATTTGGAGACAGCAAATTTTCTTAATCCAAACTATGATCATAGATGAGTGTTACTTAGTTGATGAAAAATTAGGACTTGAGCACTCTGGTGTAGTA----------Ttggcttatttctctttctgt---taggTAACACATGGTATCCACATGAAATTAAAAGACAATAAGAA---GTCTTTTAATTCAACAGCACAGAACAAAATACTTCTTCTCCCATTATATATCTTCTCCCATTATATGTCTTTTTGATGTCTTTAGCCAGTTGTGAGACCCTTGTAATCTTCCTGAATAGGTGTTTATTCTGTTCCCTA----CTGAAACTTCACAGTATATAAT-------GATAATTGGAATTTCTTGTGAGATGCTCAAGATTTCTGCCCCTTTGGCTGCAATT-TTGAATATGTTATATTCCTCCAAATATCACTATTGGGTTTTGGGGAa-aaagatacttttttaaaaaaaatgtggcctggaacaaaaaaaaaattctttttccaaagCTGATG--AAGAGAATTGGTGAAGTAaaaggtacattttaaaaa-------atgcaattgaAAGACTATTAGAAAGAATATTAATTCTTACA---GAGAAAAT----ATGTCCTGATATTATGCAGTTTTTGCTTCTTATCTCTGTAGGAATCCTTTTTTCTGAAC----ATTACCATACAATTTCTTTCAGATTTGGAGACCCCAGAAATGTCCTATAAACAGCACCAGTGCAAGCTGCCCTGCCAGCCACCTCCTGTGATCACAACCTCAAAATGTCCTGAGCCATGCCCACCTCCAAAATGCCCAGAGCCATGTTCACCTCCAAAGTGCCCTGAGCTGTGCCT------GTCACCACAAAAGAAATGCCCTCCTGTGCAGCCTCCCTCATGCTGccagcagaagtgcctgcctgaaaGCAATCAAGAATGTCAGGATTCCTC-AGATCAtaaaaagatgaggaaaattGGCTCATTTGCTTCTGTAGCAGTTCCTTCATTTCTTCAGTGCCCAACATATCA-----ACAGAACAATCTTCTTCGTCTTTTAGCCTATATCC---TGCCTGTGATCATTCCTTG

a score=20010
s chr3            92432383 1261 + 160039680 TCTGAGTCACT-GTACTTGACTCAGTGACTATGTCCAAGAACAAGATATTTCCTATTTGGGGGAGTCCTTCTTAGGCTAGTTATATATGGATTTGCATTTTTGTTAGGAAGTTTTTGGACCAGCCCACAATGAATTAGCTTTACAT--CCTACTGGGTGGGGCATCCAGTCTTATAAAATGGTGCTTAGATGAATGAGTGCAACACACTTGGTACTCAAGCCTTGGACTAC---AGAGAACCTGGTAAGTCTGACAGTCTGAAGTTATCTGTATTTATGGCCTTCTGGCATATT----TTAAATTGTA---GAAGCAGTTTGGTGCTTCCAAATTGGTATCATGGATTAAATCACAGTTATAAATGTGAAATGTAATAATGTTGTAGAGTGATACACTATGTTATCTTGTTTTTGCTTTTGTGACTAGGTG--TTGATGCCTATAGAAATACCAAGACAATAGGGAAGG-GTTGCTTTGAGGAAGGTGGCAGAACATAGAATTTGTTATTTACTTGCATTTTGGTGCCCTTTAAAAAAGACTTATGTATTAGCAGGCATTAGA-CTTTTGTATTTTCTCAGGAGTCCTTTTATAAGAACCCTAAATTCTGGAATTTCACAGGTGCTAGTCGTGAAAAAAAATTGGATTTGAAATTGCTTAGGATTTCAGAAATTGGGACTGCTATTATCAAATATGTTATTTTT-TGCAAACAATGCTACTTTGTTCTGTGCACCAGAGATGTTTCT--GGATATGGGGTATGTAACCAAA-----------CCAGGACTTACAAAGTTAA----------AGGAAAAA----AAAATCATGAAATTGGAACGGAATGTTAAGAACATCCTAACAGAACAGAAGAGCTGGGGGATTAATGTGTGTGTATGAGAGAATTACAATGCCATATTCTAAAATCTTGAGCTGTTTCTATGAGAATAACCTTTTGTGAGTGAGAAATATCATTTAATGTCTTTCAGATCCTGAGA--CATCATAATGTCTTACCAAGAGCAGCAGTGTAAGCAGCTGTGTCAGCCTCTTCCTGTGTACCCACCCCCAAAGCCTTGTTCTCCTCCAAAGTGCCCTGAGCCTTGTCCTCCCCCAAAGTGCCCTGAGACATGCCCTCCTCAGCCATGCCAGCGGAAATGCCCTCC----TGTCCTGGAGGCACCATGCCAGCAGAAATGTCCATCCAAAAGCAAGTAAAAGCTTTAGCAATCATCAAGACCAAGAGAAGAGAAGAGAATCCA--TTGTGTACTTCCATAACAACACCTCTATCTTCCCTTCACAACCTCTCAT
s HiC_scaffold_1 137760079 1204 - 233722169 TCTGAGTCACCAGGAATTAACATTATATGAAGATCATGAAACagtgtattttctattttccagaGTTCCTGTCAAGCCAGTTATGAATGAATTTGCATTTTGATAAGGAAGTTGCTGAGCCAAGCCAGTGT---TTAGAATTCCATTTCCCTTTGGTTGGGGCAGCAAGCCAAATAAAGAAGCTCTCTGATGACC---TACCACATTCCTGGTACTCAAGGCCCAATCTGCCTTGGAGAACTTGGTAAGCCTGATTTCTTGAGTTTGTCTGTCTGT-TGGTCTTCTTAGGTATTGAACTTAACCAGGACATAAGACAGTTTGATGGGATCAAATTACGATCATGAGATTCATGGTATTTACTTAAGGAGAACTTATCACTATGATACAACCATATAATGTATtggcttgcttttgttttattgg-taGATAGTTTGCTGCTCACCTGGAAAACAAGATGACAGAGAATGTGTTACTTCTGTTA---TAACAGAaca--agatttttcttttacaaatttttcagagttcttttaaaaa-atttatgtctTAGCAGTTAAAAGGTCCTTCAGTTTTTTTCCTGGGCCCTTTGGTCTCTACCC----------AGTCTCCCT--------------------------TTAGGGACTTTACAAGACTTTGAAACTTGTGGCTGCTTTTCTTGAAGATGTTCTTTTCACCCATGTAGCATTACCAAGTTCTTTGgcatagagatttttttttgggAAAATGACATAAGATGAAAGAAACGTTTTCCCAAATCTGATAAAGTAAACTGTTCTAGTGGGAGAAGCCAGAAAGTTGTAAAAAGGGATTTGAGACTCAAGAATGTTCTAAGAGA------------GAGCAATAATATG---ATGTAATAGTA---------CAta----agatttttgaaatattttctgggGAAATCCCTAATTT---TGAACATTGTCATATA-TTCCTTTCAGATCCTAAGATACAAGAAAATGTCTTATGAACAGCAGCAGTGCAAGCAGCGTTGCCAGCCACCTCCTGTGGTCATA------------------ACTCTGAAGTGCCCTGAGCCATGCCCACCTCCAAAGTGCCCTGAGCTGTGTCTACCT------TCACAACAGCAATGTCCTGTGCAACCTCCCCAATGC----TGCCAGCAGAAGTGCCCCACCAAGTGTAAGTAACAGCTTCAAGATTCATCTAGGTTatgaaaagaggaggaaaattgACTCATCTGTTTCTGTAGCAAGACATTGCTTTTCTCTTCAAAGGCTATCAT

a score=31681
s chr3            92436399 1081 + 160039680 AGAATAAATGAATAAAAAGGGACAGTTTCACTTCTTTTGG---AAAATTTCTTGAAGTGAACA-GAAGCAGTTGACTAAGCTAGAAACCAAGAAACCTAACTCAGGGACAGAGCACTACGGGTTGGGTAAGTCAGGTTCAGCTTGGCCAGGTACTAATTAGA-TTCCAGAGTGATTCACTCAGTTTTAAGAGGAGAGTCCTCCTGTACCTCTGAGTGACCTAAGTAAAAGTCTCTGATGGCATTGCATAACCTTCCCTG--------GGATTCCTCAGTGGGAAGATCTTCCAACCCATCAGTAAAAGGAGCATTAGTATCAAGATCAGATGTCAACTGAAGGAGCCCTTTCATACCATCTTGCTGAGAATAGCCTTTGCTTCATGAGGAAAAGGAA-GAAATCACTGAGTCAGACA---------ATAGCTAGGAATGTAA-GGAG---ATTTAATAGGAACATAAAAGAACCCAATCACTTGTAACTTGGTCTCTTTTCGGGAAAAAATTCTGAATGGACAA--ACTAGCTCAGCTACCAAGTT-CTCGGGTGAATTCTGAGACCCAGAGCCCCAACATTAATAGGATTAAAAAAAAAAACTTTGTAGTACTTAATTTTAAAATA-TAAATGAGAAGTGGGACTGTGATATTAGGGCATAGTATATTC----------------------AAACAGAATGCAAATTGAGGCTCAGCATCTATTGTTGATCATCTCCCCAAGGCACAGCTTTTGGG---CACTACTTTTGCTTTGTCTTCTGTTGGGCTAGTATTGGAGTGACAGTTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAG------GGTGTCTTGACTTGTGAGACACATGGCTCAGG
s HiC_scaffold_1 137909230 1066 - 233722169 AAAAGGAACAAATCAGGAAAGGCAGATTCACAGAGGTAGAGACAATAATCATTAGAATAAACATGACTTTGTTAACTAATTCAGCAAACTGGAAACC--------------AGATCTAAGGGCAGGGCAAGTTAGAGTGAACTGGGACAGGCCTTAACTAAAACTCTAGTGTGGCTTACTGAATTGTAAGAGGACAGCCCTGCTCCAGTTGTGGGTTTCCAAAACAACACCTCTGGGCAGCATTGCTTAGCCTATACTGTCAACTGAAGAGTGCTTATCTGGAG------CCAACTC-TCAGACAAACAA---------CCAGGGTCAGATGCCTGCTTT----GCCCTCTCAT---------CTCTGTAAAGCTCCTGCTTTATGAGGAAATGGAATGAAGGAATTGAGACAGACAGCAATGCACACAGCCAAGAGTGGAATGGAGTGAATTtaat-ggagcaaaacaaaattgaatCACTTGT-------TTTCACCTTAAGACAGA-TTTTGAGCAGATGAGAACCAGCTCAGGTACCAAGTTTCTCAGCCTAATTTAGAGGCTCAGGA---------------GTGTAGGAAGGAAAACTTCATAGCACATACTTTTAGGATAGTAAATGAGA-GAGAGACTGTGAATCAAGGTGACAGCATGCTTTTGTGAGGCAATTGGGATCCATAAGCAGAGTGGGAAAGGGGTTTCAGCATCCA--GTT-ATCTGATCCTCAAGGGCCTGGCTGTGGATCACATTACTTCTGTGTTGTCTTCTGCTGAGCTGGTACTGAAGTGACAGTTAAAGTTCAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTG------GCATGGCTCAGG

a score=20390
s chr3            92437038 555 + 160039680 AAACAGAATGCAAATTGAGGCTCAGCATCTATTGTTGATCATCTCCCCAA-GGCACAGCTTTTGGGCAC--TACTTTTGCTTTGTCTTCTGTTGGGCTAGTATTGGAGTGACAGTTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTGTTGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCTGCTTCTGCTGATGTGAACTCATGCTTCAAAGATGGATGAGCCTAGAAA
s HiC_scaffold_1 137967873 434 - 233722169 AAGCAGAATGGGAAG-GGGGTTTGGCAT---TTGGTGATGAGCTCCTCAAAGGCGTGGTGGTGGATCACATTACTTCTGCTTGGTTTTCTGCTGAGCTGGTGCTGGAGTGATCGTTGAGGGGCAGGGCTCAGGCAC------------------------------------------------------------------------------------------------------------------------CTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCTGGTGCTGGTGAACGTGAGGGGGTGCGGTGCAGGGTTGCTTCTGCTGGTGGGAACTCATCCTTCAACAGTGGTTGTTCCTAGAGA

a score=5589
s chr3            92437100 343 + 160039680 GGGCACTACTTTTGCTTTGTCTTCTGTTG-GGCTAGTATTGGAGTGACAGTTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCA---GGGCTCAGGAACCTTGGTGT
s HiC_scaffold_1 137921620 344 - 233722169 GAGCATTATTTCTGCTTAGCAATCTTTTTTAGCGGAACCTGGAGTAACTTTTGAGGGGTTTGGCTCAGGAATCTCACATTGGCGTAGCTCTGGGGCCTTGGTGTATCCTGGCTCAGCAACTTTGCTGTAACTTGACACAGTGGTCTTGTCATATTCCGGCTGAGAGATAGTGGTATATTCTGGTGCAGGTACAATGGTGTATCCTGGTTGAGGGGCAGTGATACATCCTGACTCAGGGACCACAGTGTATCCCGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGAC---AGGATTGCATCCTGACTGAGGGACCACAGTGT

a score=19225
s chr3            92437126 374 + 160039680 TTGGGCTAGTATTGG--AGTGACAGTTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGAC-ACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910276 376 - 233722169 TTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGC-TCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCT

a score=18300
s chr3            92437133 367 + 160039680 AGTATTGGAGTGAC--AGTTGAGGGAC-----------AGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTG-ACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909984 380 - 233722169 AACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGG-GTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCT

a score=4147
s chr3            92437137 123 + 160039680 TTGGAGTGACAG------------TTGAGG-GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCT
s HiC_scaffold_1 137968078 136 - 233722169 TTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=9359
s chr3            92437137 195 + 160039680 TTGGAGTGACAG------------TTGAGG-GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCT
s HiC_scaffold_1 137968006 208 - 233722169 TTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=18013
s chr3            92437137 412 + 160039680 TTGGAGTGACAG-------------TTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACC----------------TTGGTGTCACAGGGTGTCTTG--------ACTTGTGAGACACATGGCTCAGGAGG--TGGTGGCTGGCAAGGCTGTTTCACTT--GTTGCTCATGCA-ACTGTGGAGGAGCTGTGCAGGGCTGCTT
s HiC_scaffold_1 137910540 452 - 233722169 TTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTG--TGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTT

a score=18747
s chr3            92437137 358 + 160039680 TTGGAGTGACAG------------TTGAGG-GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAG------GGTGTCTT-GACTTGTGAGACACATGGCTCAGGAGGTGGTGG----CTGGCA
s HiC_scaffold_1 137910324 382 - 233722169 TTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCA

a score=18772
s chr3            92437137 363 + 160039680 TTGGAGTGACAG--TTGAGGGAC-----------AGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910180 376 - 233722169 TTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCT

a score=9721
s chr3            92437137 169 + 160039680 TTGGAGTGACAG------------TTGAGG-GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGG
s HiC_scaffold_1 137910228 182 - 233722169 TTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGG

a score=19040
s chr3            92437137 408 + 160039680 TTGGAGTGACAG-------------TTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTGT---------TGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCT
s HiC_scaffold_1 137910348 424 - 233722169 TTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTG------GCAGGGCT

a score=19009
s chr3            92437137 378 + 160039680 TTGGAGTGACAG-------------TTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTGTTGCT
s HiC_scaffold_1 137910252 391 - 233722169 TTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTT

a score=19427
s chr3            92437137 363 + 160039680 TTGGAGTGACAG--TTGAGG-----------GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910084 376 - 233722169 TTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCT

a score=19657
s chr3            92437137 363 + 160039680 TTGGAGTGACAG-------------TTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910444 376 - 233722169 TTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTT

a score=5091
s chr3            92437141 136 + 160039680 AGTGACAGTTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGG
s HiC_scaffold_1 137910845 129 - 233722169 AGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT-------CCTTGATTGGAGAGACACATGGATTCTGAGGTGG

a score=19220
s chr3            92437144 356 + 160039680 GACAGTTGAGG--GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910054 358 - 233722169 GACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTT

a score=17995
s chr3            92437145 355 + 160039680 ACAGTTGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909985 355 - 233722169 ACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCT

a score=8832
s chr3            92437150 234 + 160039680 TGAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGG-------TGGCAGGGCT----------------CAGGAGCCTTGGGGTGGCAGGGCTCAGG
s HiC_scaffold_1 137910782 248 - 233722169 TGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT-------CCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGC--TGAGGTGGTAGGGTGCAGG

a score=5315
s chr3            92437151 133 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTT
s HiC_scaffold_1 137968081 133 - 233722169 GGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=10480
s chr3            92437151 222 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGG
s HiC_scaffold_1 137910759 215 - 233722169 GGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT-------CCTTGATTGGAGAGACACATGGATTCTGAGGTGG

a score=11461
s chr3            92437151 205 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCT
s HiC_scaffold_1 137968009 205 - 233722169 GGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=17958
s chr3            92437151 398 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGAC-ACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTGTTGCTCATGCAACTGTGGAGGAGCTGT---GCAGGGCTGCTT
s HiC_scaffold_1 137910543 401 - 233722169 GGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGT-TCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTT

a score=18556
s chr3            92437151 349 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910447 349 - 233722169 GGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCT

a score=19190
s chr3            92437151 349 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGAC--ACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910183 349 - 233722169 GGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGG--GCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCT

a score=19274
s chr3            92437151 349 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGAC--ACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910087 349 - 233722169 GGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGG--GCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCT

a score=18910
s chr3            92437151 349 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910039 349 - 233722169 GGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCT

a score=19301
s chr3            92437151 394 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGC------------------------TCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAG------GGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTT---------GTTGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCT
s HiC_scaffold_1 137910231 421 - 233722169 GAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTG------GCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGG------TTGGCAGGGCT

a score=19741
s chr3            92437151 394 + 160039680 GAGGGACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTG-------------AGACA-----------CATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTT---------GTTGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCT
s HiC_scaffold_1 137910327 421 - 233722169 GAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGG------TTGGCAGGGCT

a score=7338
s chr3            92437152 537 + 160039680 AGGGACAGGG-----------CTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAG---GGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAG---GGCTCAGGAGCCTTGGGGTGGCAGG------GCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTC-------------ACAG---GGTGTCTTGACTTGT--------GAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTGTTGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCTGCTTCTGCTGATGTGAACTCATGCTTCAAAGATGGATGAGCCTAGAAACAG-------TATAAATGAT--------ATATGGAAGGAA--TAGCT---TGGCAAGAA-ACCACAGGGAATACATTTCCAAAGTCTTAGGAAGTAAAGGTTCTCCTTTCTCTCTCT
s HiC_scaffold_1 137922022 591 - 233722169 agggacaggaTTGCATCCTGACTGAGGGACCACAGTGTGGCCTGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGAC---AGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGATCAGGGACCACAGcatgtcccactgcagggac---aggaTTGCATCCTGGCTGAGGGATCACGGTGTGTCCTGATCCTGGTGCAGTGACTGTGGTACATCCTGGATCAAGAACTGTGATGAAGTAAGGCTCCGCAATCTTGGTGGTTCCAGGTTGTGGAACAGTTGGGTGACTTGCCTCCTTGGTGATGGGAACAAATGGTACTTCAGAGGGAGGCTGGTAGGGTTGTTTGGCCTGCTCCTGTTGAGGCTGAGGGGGAGGGGCAAATGGCTGCTTCTGCTGGTAGGAACTCATGCTACAAAGGATGTTGGGCCTGCAGACAGAAAAGCCTATTAGTTATTTGGAGGAACAAGGAGGGAACTCAATTTAATGACAAGAATCCCTCATTGTGTATCCTTTCAGAG--------GTAAaagattctcttttctttcttt

a score=6693
s chr3            92437155 181 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCA---GGGTTCAGGAGCCTTGGGG--TGGCAGGGCT----------------CAGGAGCCTTGGGGTGGCAGGGCTCAGG
s HiC_scaffold_1 137910835 195 - 233722169 GGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGA--TTGGAGAGACACATGGATTCTGAGG---TGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGC--TGAGGTGGTAGGGTGCAGG

a score=7261
s chr3            92437155 153 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCT
s HiC_scaffold_1 137968061 153 - 233722169 GGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=7529
s chr3            92437155 205 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGG-------TGGCAGGGCT----------------CAGGAGCCTTGGGGTGGCAGGGCTCAGG
s HiC_scaffold_1 137910811 219 - 233722169 GGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT-------CCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGC--TGAGGTGGTAGGGTGCAGG

a score=11672
s chr3            92437155 334 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTG-------GGATGGCAGGGCT----------------CAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAG-ACACATGGCTCAGGAGGTGGTGG
s HiC_scaffold_1 137910739 332 - 233722169 GGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT-------CCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGC--TGAGGTGGTAGGGTGCAG----------------GGCTGCTTCTGCTGGTGAGAACTCATGCTTCAACA-GTGGTGG

a score=13654
s chr3            92437155 266 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGG
s HiC_scaffold_1 137910715 259 - 233722169 GGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT-------CCTTGATTGGAGAGACACATGGATTCTGAGGTGG

a score=14888
s chr3            92437155 250 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTC
s HiC_scaffold_1 137910691 250 - 233722169 GGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=17114
s chr3            92437155 383 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCT-------------------CAG--GAGGTGGTGGCTGGCAAGGCTGTTTCACTTGTTG----CTCATG---CAACTGTGGAGGAGCTGTG
s HiC_scaffold_1 137910667 411 - 233722169 GGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGCTGAGGTGGTAGGGTGCAGGGCTGCTTCTGCTGGTGAGAACTCATGCTTCAACAGTGGTGGGACCTTG

a score=10799
s chr3            92437155 181 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGG
s HiC_scaffold_1 137910619 181 - 233722169 GGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGG

a score=17153
s chr3            92437155 295 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGA------------------------GCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGG
s HiC_scaffold_1 137910595 319 - 233722169 GGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGG

a score=18864
s chr3            92437155 345 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGG-------TGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910499 345 - 233722169 GGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCA-GGTGCTTTGGGATG------GCAGGGTTCAGGCATCTGTGGTTGGCAAGGTT

a score=18877
s chr3            92437155 390 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTG---------TTGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCT
s HiC_scaffold_1 137910523 393 - 233722169 GACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGA------CAGGGCT

a score=18803
s chr3            92437155 345 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGAC-ACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910403 345 - 233722169 GGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGC-TCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCT

a score=18892
s chr3            92437155 345 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910427 345 - 233722169 GACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCT

a score=19221
s chr3            92437155 345 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910163 345 - 233722169 GACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTT

a score=19265
s chr3            92437155 345 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910139 345 - 233722169 GGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCT

a score=39949
s chr3            92437155 1833 + 160039680 GACAGGGCTCAGGAACAATGGGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTTGTTGCTCATGCAACTGTGGAGGAGCTGTGCAGGGCTGCTTCTGCTGATGTGAACTCATGCTTCAAAGATGGATGAGCCTAGAAACAGTATAAATGATATATGGAAGGAATAGCTTGGCAAGAAACCACAGGGAATACATTTCCAAAGTCTT--AGGAAGTAAAGGTTCTCCTTTCTC--TCTCTATAATAGATGGTACTTTGCCCTGGGAGGCATTTAAAGGCAAAATGttgtttgtttgtttgtttgtttgtttgtttgtttgttttttgagacagggtttctctgtgtagtcctggctgtcatggaactcactctgtagatcaggctggccttgaactcagaaatctgccagcttcggcctcccaagtgttgggattaaaggGCCTTTCTGTTTGCCCCCTCTTCCTACCTATATTAATGCACATGTATATCAACATAGCATAGGGCTTTAGCAGGAATATTAGAGTGATGGCATTGGTTCACATTGAAATGTAA---TGGTGTGTAAAAAATAAAAACTGTAAAATGCC---------CAGAGTCTATT-----AATCATTTGCAATGAAGAAGATGTTTTATCACCTGGAGAATGTCTGTGGCCACTCCAGCATGC--AGCACCATCCCATGTGGCTCACACACTGCTCTCTCTGCCTGAGGAGATCTACTGATAGCTGCTTTCTCAGATTAGCCCAACTGCCACAAAACACATGCTATGCCATTTT-TAGGCAACTTTTCTAGAGTAACCACCTCAGAAATTTTTCTTGTTTTCCTAAACTACCATAGCCCTTGCCCCTGACTCCTGCCACTG-CCACTTATGGCACTGC--TTTTAGTTCTTATTTTTCTAAATAAGAAGCCATTTGTAG--------------AGCCTAAA-TTATCCTTTAGCAGTTCAAAACACTAGACACAGTAAACCCATAACAAATGTCTTTGTTGAAAGAACAAAAGTCTCATCATTAAGATTGTAGATAAAACAATGATGTCACTAACAGTGGGAAAAGTCTAT---TTTG-----------CTACTTA--------TCCAGACACAG-----------------ACAACAGCGAGAATTGATGGACCATAGCAATTACATCTAAAGAT---AAATCAGTTGTGATTATTTTTAA---AAGAACATTTCCAT-------CATCTGTAC---------TATAACTACGACTAAATTTCAATAA----GAGGGAAATAAAACCACCCCTAATGCATCAATGCAAAGGAGGCTCCAGTGAAAGTCACTCAAATGCACAAAGTAAATGGTAAAGT-TTCCATGTAAAGAGACTTACCTGGTATATGGAGGACAGGTAGTGTGGTCGCTGGGATCGGATGTGGTATCCTCTTCACACTGGCTTTTTATAGAAGGAATGAGACCTGCCTGAGGGTAAATGGGAGTTTTTGGGCTGCCGCATCTTCATTGCTTGCCTGTCAGACATGATTCATCCTAGGTGCTCCACCCACTTATTGGTCCAGCTTTTGTGATGAAACTAGTAATGTGACTTTTTTTT---CACATGCTGATAATTATGCCATC---TGAGAATTA
s HiC_scaffold_1 137910643 1728 - 233722169 GGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGCTGAGGTGGTAGGGTGCAGGGCTGCTTCTGCTGGTGAGAACTCATGCTTCAACAGTGGTGGGACCTTGAGACAGAAGAGATAATTTA-AACAGGGAGAACTCAGAAAGAAGAAATGCCCAGTGCCACT-TAAGGTCTTTGAAGAAGCATaagtctttctttctcctcctttaccACAAAGAATACTTT------------------------CATGATTTCTG--------------------------AGTCTTTGAAGAGAAGGAATCTAAATGTGAT-----CTGTTCT-------ACTCCA--------------CTTGAGC------------------------------------AAGGAAAAGCCCTGCGTATTT------CCTTCATACACACCCTAAAGCCCAT---TAGGAGTACAGCACAGTG--------GGAAAGTGAGACTCACAGCATTGAATTACATGAAATTATGAGGCTATTTTGTAAACAATATGAAACAtaacaaaccaaatcaaaaaagCCTCtgtttactcatttatttctGATATCTAGGATGGCTTACTATGCAAAGGATAAT--TGGCTGCTCTGGCATCCAAAGAAGCATATC-TGTGACT-------TGGCTCCTTTACCTCAAGTGCCTGCCCAAATGTTACTCTGTCAATGTAG--------------ATCACATCGTATTGTATCTTGGGGGCAGATTTTCTAGAGTAACTTTTCCAGAAATAAT--CTATCTCCCCAAACAGTCATATCACTTACCCTTGTTACTTGACACTGATCATTCAGTGCATtgcattttaggttttttttctcctaaatataTTGTAGCTTATGGATTAAGTTCTCTATagtcaaaatttaatttttagc------aaATATCATATACAATAAGTTC-ccacaaaaatatttgttgaaagaacaACATTC----cattaaaattacaaagaaagaagT-AGGTCA--------GGAAAAACACTGTAGATCTGGGCTCTCAGTCTTACTTAACTCTAGGTCCTAAAACAGCTCATCCTCTTCTCACTAACACATCAAGAAAGGATGGGAAGAACCAATCATGTCTAAAGTTCCCAAAGCA----CAATTACTGTCAAAGCAAAGATATTTCTATAGATTACAATTCATATAACAGTCTATGTGACTATAGCCAAATTTTAATAATACTGAGAAATATCAAAATGCCTATAAGGtgccaataaaaa---------------------ttaaacacctAGGGTGAATGGTAAGATGTTTCAAATAAAGAGACTCACCTCAAAC-------ACAGATAGTATGGTCACTCGGGTCTGATGTGATCCTTTGAGCCAACTGCCTTTTTATGTTGG---TGAGCCCTGCCTCAAGG-AAATGGGACTTTCAGAGCTGCTAtgtcctttttccttccctgtcAGACATGATTCACCCTTGA------ATCCACTTGTTAGCTCAGCTTTTATGATGAAATTATCAGTATGACCATCGTTTTGGCACTTACTAACAATTAAGTCACCTTATGACAATTA

a score=12112
s chr3            92437175 205 + 160039680 GGTTGGCAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCT
s HiC_scaffold_1 137968009 205 - 233722169 GGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=16425
s chr3            92437181 319 + 160039680 CAGGGCTCAGGAGCCTTGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 319 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCT

a score=12144
s chr3            92437197 207 + 160039680 TGGGAAGGCAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCT
s HiC_scaffold_1 137968007 207 - 233722169 TAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=15357
s chr3            92437205 295 + 160039680 CAGGGCTCAGGAACCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTG-ACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 295 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGG-GTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCT

a score=12478
s chr3            92437221 207 + 160039680 TGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCT
s HiC_scaffold_1 137968007 207 - 233722169 TAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCT

a score=13347
s chr3            92437229 271 + 160039680 CAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 271 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTT

a score=12035
s chr3            92437245 184 + 160039680 TGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTC
s HiC_scaffold_1 137968007 184 - 233722169 TAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTC

a score=11269
s chr3            92437253 227 + 160039680 CAGGGCTCAGGAGCCTTGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACA------GGGTGTCTTGACTTGTGAGACACATGGCTCAGG
s HiC_scaffold_1 137909973 227 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTG------GGGTGGCAGGGCTCAGG

a score=11883
s chr3            92437269 186 + 160039680 TGGGGTGGCAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCT
s HiC_scaffold_1 137968007 186 - 233722169 TAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCT

a score=9906
s chr3            92437277 223 + 160039680 CAGGGTTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 223 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCT

a score=12088
s chr3            92437287 271 + 160039680 GAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTT--GTTGCTCAT-GCAACTGTGGAGGAGCTGTGCAGGGCTGCTTCTGCTGATG
s HiC_scaffold_1 137967978 249 - 233722169 GATCGTTGAGG-GGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGT-----------TTAGGCACTTCATT-------------GTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCTGGTG

a score=8872
s chr3            92437301 199 + 160039680 CAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGT------GTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 199 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTG------GCAGGGCCCAGGAACCTTAGGATGACAAGGCT

a score=10031
s chr3            92437311 140 + 160039680 GAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGT
s HiC_scaffold_1 137967978 139 - 233722169 GATCGTTGAGG-GGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGT

a score=6853
s chr3            92437325 174 + 160039680 CAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGC
s HiC_scaffold_1 137909973 174 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGC

a score=8175
s chr3            92437335 174 + 160039680 GAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAG------GGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCTGTTTCACTT
s HiC_scaffold_1 137967978 173 - 233722169 GATCGTTGAGG-GGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTG------GGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTT

a score=5167
s chr3            92437349 151 + 160039680 CAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTG--ACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 151 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGC-TCAGGCAACTTG-GGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTT

a score=5968
s chr3            92437359 141 + 160039680 GAGCCTTGGGGTGGCAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAG------GGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137967978 140 - 233722169 GATCGTTGAGG-GGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTG------GGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTT

a score=4385
s chr3            92437373 127 + 160039680 CAGGGCTCAGGAGCCTTGGGATGGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACAGGGTGTCTTGACTTGTGAGAC--ACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909973 127 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAG--GCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTT

a score=4453
s chr3            92437395 105 + 160039680 GGCAGGGCTCAGGAGCCTTGGGGTGGCAGGGCTCAGGAACCTTGGTGTCACA------GGGTGTCTTGACTTGTGAGACACATGGCTCAGGAGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137967989 105 - 233722169 GGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTG------GCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCT

a score=41497
s chr3            92454663 2919 + 160039680 GCTTTTCCTATAGGGGATCTATGCTACAGAACC-CAGGAA-----TGGTTTTGAAAGGGCTGAACACATATGTCTCCTTTAGCTTACTAGTAACTTGACTGGCTTATATTAAGTATAACAATAAAAGTAGTAAAATAAATACAAAATAGCATCACATAGGGCAAATTATTCTGAGAGA--TAGACAA----AAAATGAACATTAACAAGAGTTGCCAAGAAAAATCATTGCTTACATTTTGCTGAATTTACCACTAGGGTTTTTCCATGTTT--CAGAAGCTCATTTAAATCCATGTATCTTAACATAGGTGTA---TATTGCATACTGTATCAATGCTACAGAACTTTGCAGAATACACTGTAAATAATTATAGCAGACAACatttattatatattataaattaacataataatatgtaatacatttaaaatattttGAAATAGACAGCTCTAAACTATAGGTACAATGAAAATATATTATTCTATATTCATAGTAGCTGCATATCGCACACTGGGCATCTGT----ACATAGAATTAGC-----TACTTAAAGTGATTCATCCTGCACTCATCTCTAAAGCTTTCCACCACTGAAACCAGTGGTAACGTGAAGCCACCTCAGCATGTGTGTACCTATCAGGTACAAGGAATGTCCTTCTCTCTTGCCGGTCTAACAACTTCTCATCACATTGTGATGATTTGA-GAGTGA-------------GTTTCCATGTATTTCAGAAACACTTGTGAAACCTACTTGAAGTACTTGTGTAGCATGCTGCTTCTGCTTGTCGCCTGACTCATACCTCTGAC---------ATTGTGGGACTTACTAAGAACGCAACTTGTTCCCTAGGGACTCCTGCAGCTTTTCTAAAA-TTTATGTT---TTGCTTACTGCTAGAGATGGCTCTTCATTAC-CCTGCT------------CTCTGCACATAACCTCA----CCTGT-GGGTCATCCCTGAAACCAAGATTATC---TCATAGGAAGTAGCAAGGGA------CTGAGATGCTGAGCTCTAGGTGTGAGGCAAACACA------------------------TATTTTTTGTCTTTTATGGAACAATATAGCAGCTGTGTT--CGACGTTCTAGTACCTCTTTACTCCTGGGATGCCAA--AGCGCAGTGACCTGC--------ACTTT---CCTAA--------CTCATCTAGATTGTGGATTCCATGTCTTTATTTAAAACTCATGCTCTAATTTAATCACTGGATCAATTGTCTCATGAATTGCTCCCAGGCAGATAGACTTTGAAAAAGGAGAGTGGGAAA----AAATAGGAGTGCATAGTGTGCACATGTTTGTATGAAAAGGGCACAGAATATTATAATCACTAGAGAAAGCAG-ACCTGTTCAAGGCA--------AGCACTG----TGCTTTCTCTTCTCCTGTGTC--CCCAGATGAAAGACTTCTT--ATGTGTTG-AGTGTCTGGAGA-----------------AAGGGCACATTGCCTGAGTAAATGAGAGTAGAATTTGTGCAAGTGATCATGAGAGTCTGTGGAGATATGCA--------------GGGAGAGTAGGTTGGTATGTATCAGGGCTAATTAAAAGAGAGAATGAAAATGAAAACTGAGAAGAAAGAGTATAAATGTAACTATCCATTGAAAGG-------------TGACTTCAATACTGAGGATAAGAGGTAGTTCAGGGCAGAG---AAAACAATCAGGTAAGGCTCAGCAAAG---AACAGAAGGACTTTGTTTAAAATGG-TGT----TCCAAACAGACAGGTTTTGAGTGCTGGTAAACAATACCCAAACACTCTTCTATGAGAGCCTCCTAATGTGTGTCCTCACAGCCTTTTGAGAATACACTGTGACAGAGTTAGTGTTAATGAGATTACATCCATACCA--TCTTTATCAGTATGTAGGTCTTGACTCACCAAGGAAGGTAAAGGAAAGAGAACATTTCAGCAAATATCACACAGAGGCAAGGGTGGAGTTAAAAGTAATT--ATTTAATGGGGAAACAATCATTTTTTTCCCATAGAAAATCCCATAGATTTCTGCTTCAGATGAACTTAGAGTACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGAGACACCTTAGAGGGT-ATGGAGAAGACATAACAGCATGCAATTTTAGGTTACAAATAGAG---ACTG--------TAGCAACATATTG-TTACATGGTCTCTAGACAAT---GGGGACACAGAGCTTACAGGAAAG--ACTTCAGCAGCAGGTGGTCAGCTCCTCAAGGGTCTGGCTGGCTGTGGACTGTATTACTTCTGCTTGG---TCTTCTGCTTAGCTGATACAGGGGTGACAGTTGGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATG------------------GGTGGGCTCTGAGGCATTCA------TGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAG------------CTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCA------------------------CAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGA----------------TGTTGGTAGAG--------CATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTAT------------------------AATCTGGCTCAAGAACAACAGTGTTCCCTG------------------------------GCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAGGTGGCTATGGGAACAAATTTTCCTTGTGGTGGAGGCTGACAAGGTTGCTTCACTTGATGCTGTTCAGGCTGAGGAGGTGGGACAAAGGGCTGCTTTTGCTGGTAAGAACTCATGCTTCAAAGGATGTT-GACCTAGAAACAAGACATCTGATTGAGTGTTT
s HiC_scaffold_1 137919449 3077 - 233722169 GCTTCTTGGATATGGGATCTGTGT---AGAGCCtcaggggattttttttttttgatgtgaaGAATACGTGCTTTTCCTGTAGCTCAGCAACATCTTca------------agatat-----------tagaaaaataaatataaaataataccatATACTACCTATGATTTTGGGAAACTTAGAAGAGTTAAAAAAGAGCactataaaa----gacagaaaaatctaCTGTATATATTTTGCTGAACTTTATATGAGGCCTTTTGTGTGTCTTCCATGAGcccacatacatgtatatattttaacaaaGAGGCAGGACATTGTAAATGGAATTAGTACCACAGAATT-------GTACATttcaaatgttta--gaaaataaattttgttatccat-----attttctttagaaaa-------------atatatttttaaaaagttaacccCAAACAATAGAAGCAAcagaattataatattttatattgataaTAGCTATGTGTC----ATCAGGCCTATGTCCCCACTCAAAATTGGCCTAGTTATTT---GTGACTTGTGCTGGAGTCAT-TCTAGACTTTTCCACCATGGAACTCAGGAGTAATGTGGAGCCAGCTAAACTTGTATACATATAACATATGCAAGGGATGTCATTTTCTCCTGCCAGTTTGATAAAGACTCATCACCTTGTATTAACTCGTTGAATGATTTTTATCTTATAGTTTCCAAATATGTCTGAGGT-CTTGCCAAACCTATCTGAAGTGGTTGAGCACCATGCAGGTTCT---TACTTCCTCCCACAAATCTCTTATGTGTTATAGATCATTCAACCTGCTAGGAAATTGA---GTTTGCCAGTTACAATTGAAGTCTCTTTGAAACTTTATATTGACTTTCCTGCTGCTGGAAATG---TTCTGTTACATCTGTTGCGTATTAAAACCTCTCCACAGAGCCCCATAATCCTGTCTGGTCATGTATGAAATCAATATGACCAAGCTGTAGGAGAAAGTAAggataaaattttggcaaactgTACTCT-GATATGACACAGAAACAGAATCTCTTGGTTATGTTAGTTAACATTTTGAGCATAATTTTGAAAACTGGAGTGGATATCTTGATGCCATTAAAGTCTTCTTTCAATTCTGTGATATTTTTTAGCATAATAACCTGCTTGCCTCAACTTTGTAACTAATTATTTTCCTCACCTGGATCAGGTACTTCTAACAACTGCTTAAAATTCA--CCTTA------------------------CATGGAGTATTCtggggaa---agagagggaaaaagagggattggagagggaaagagagagtgCAAAggttgtatatatttt---------------aagtaatgTAATTCCAAGAGATGACTGCAAATTCTCAGGGAAGGGTGGGGAGCTCTGGAAATGCTGT---TTCCCTTGTGCTGGTCCACTTGTAGGATTCCTTGCAAGTGTTGGAATCCCTGAAAATTGTGGTCTCCAAGCAAAAGATGGCATGTCCTGAGATGATGAAAGTGCA--TTGTATAGGTAACTAGGTGAGTGTGAAGAAATGTACAACGAATGTGTCTCCGTGACACTGTGTGAATCTGAATCAGGACTAATTCAAAGgaacataaagaagaaaagcacaaTATAAAGTATGTGTGAATAATCCtttcttgaaaagaaaagaagatttaTGAGGAGAGGACTAAAGATCAgaggaaggctggggcagggtccATGAAACTCTGGAGTGACTCAGTTTAGTGCAATAGGAAAACCATATTCTTACTAGCTGTGACACCCAATGTGACAAATTCTGTGTATCATCAAATAACTTCTAGTTACTATTCCAGAAATACTT-----TATGTATATGCACAGCCTCATACAAATATACCACAA--GACTAAGTG-----AAGAT---ATCAATACCAACTCTTCCCTGTGATGTA--TTCTGACTCACAATGAGAGAACAAGGAAAGGCAAAGATTCAACCAATG----ACAATGACCAGAGTGAAGGCAAAAGCAATTTAATGTGACAAAGCAGAAACACATTTCATCTAATCAAGAATCTCTT----------TTCAAATGAATTGTGAGAGATTGCAGATCA--------GCAAAGACGCTCTGCTTAAG-------------------CATAGATGGTTATGGGGGAAACATAAA----------TTTAGAACACAAATGGAGCAGACTGGCTGAAGGTGAGAGCATATTGATTATAAGATCTATGAAAAATTAAGCAGACACAGAAACGAAGAGCAGGGGAACTCAGCAGCTGGTCATCATCTCCT-----GT-------GTTGTCAAGAGCATTATTTCTGCTTAGCAATCTTTT--TTAGCGGAACCTGGAGTAACTTTTGAGGGGTTTGGCTCAGGAATCTCACATTGGCGTAGCTCTGGGGCCTTGGTGTATCCTGGCTCAGCAACTTTGCTGTAACTTGACACAGTGGTCTTGTCATATTCCGGCTGAGAGATAGTGGTATATTCTGGTGCAGGTACAATGGTGTATCCTGGTTGAGGGGCAGTGATACATCCTGACTCAGGGACCACAGTGTATCCCGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGACAGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGTTCAGGGACCACAGcatgtcccactgcagggacaggaTTGCATCCTGACTGAGGGACCACAGTGTGGCCTGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGACAGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGATCAGGGACCACAGcatgtcccactgcagggacaggaTTGCATCCTGGCTGAGGGATCACGGTGTGTCCTGATCCTGGTGCAGTGACTGTGGTACATCCTGGATCAAGAACTGTGATGAAGTAAGGCTCCGCAATCTTGGTGGTTCCAGGTTGTGGAACAGTTGGGTGACTTGCCTCCTTGGTG---ATGGGAACAAATGGTACTTCAGAGGGAGGCTGGTAGGGTTGTTTGGCCTGCTCCTGTTGAGGCTGAGGGGGAGGGGCAAATGGCTGCTTCTGCTGGTAGGAACTCATGCTACAAAGGATGTTGGGCCTGCAGACAGAAAAGCCTATTAGTTATTT

a score=18136
s chr3            92456454 966 + 160039680 AGGTAAAGGAAAGAGAACATTTCAGCAAATATCA---CACAGAGGCAAGGGTGGAGTTAAAAGTAATTATTTAATGGGGAAACAATCATTTTTTTCCCATAGAAAATCCCATAGATTTCTGCTTCAGATGAACTTAGAGTACCCAGAGAGCATTCAAGGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGAGACACCTTAGAGGGTATGGAG-AAGACATAACAGCATGCAATTTTAGGTTA-CAAAT-----AGAGACTGTAG----------CAACATATTGTTACATGGTCTCTAGACAATGGGGACACA-GAGCTTACAGGAAA---GACTTCAGCAGCAGGTGGTCAGCTCCTCAAGGGTCTGGCTGGCTGTGGACTGTATTACTTCTGCTTGGTCTTCTGCTTAGCTGATACAGGGGTGACAGTTGGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909573 938 - 233722169 AGGAAATGGAATGAAGGAATTGAGACAGACAGCAATGCACACAGCCAAGAGTGGAAT--GGAGTGA--ATTtaatggagcaaaa------------caaaattgaatCACTT-GTTTTCACCTTAAGACAGATTTTGAGCAGATGAGAACCAGCTCAGGTACCAAGTTTCTCAGCCTAATTTAGAGGCTCAGGAG-----------TGTAGGAAGGAAAACTTCATAGCACATACTTTTAGGATAGTAAATGAGAGAGAGACTGTGAATCAAGGTGACAGCATGCTTTTGTG--------AGGCAATTGGGATCCATAAGCAGAGTGGGAAAGGGGTTTCAGCATCCAGTTATCTGATCCTCAAGGGCCTGGCTG----TGGATCACATTACTTCTGTGTTGTCTTCTGCTGAGCTGGTACTGAAGTGACAGTTAAAGTTCAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTC------------AGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAG

a score=10904
s chr3            92456475 546 + 160039680 TCAGCAAATATCACACAGAGGCAAGGGTGGAGTTAAAAGTAATTATTTAATGGGG---------AAACAATCATTTTTTTCCCATAGAAAATCCCATAGATTTCTGCTTCAGATGAACTTAGAGTACCCAGAGAGC--ATTCAAGGCACTAAGAAGTTCTGCTTAACTCAGAGGCTCTGGAGACACCTT--AGAGGGTATGGAGAAGACATAACAGCATGCAATTTTAGGTTACAAATAGAGACTGTAGCAACATATT-GTTACATGGTCTCTAGACAATGGGGACACAGAGCTTACAGGAAAGAC-TTCAGCAGCAGGTGGTCAGCTCCTCAAGGGTCTGGCTGGCTGTGGACTGTATTACTTCTGCTTGGTCTTCTGCTTAGCTGATACAGGGGTGACAGTTGGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTT
s HiC_scaffold_1 137967620 522 - 233722169 TCAGCCAATGACACATACAATCAGGCATGGCATTAAAACTAATT---TAATGAGGCAGAACAGGGAAGAGACACTCCATTCC---------TCCCACAA--TCCCTCTTCAGACCAACTGTGAGCCACTGGAAGATTAGTTCAC--CAGTGGGACTTTCAGCAGTGTCCAGAGGCT--AGAGA-ACCTTCCACAGTGAGTGCAAGGGATAT------------TTTTAGAT----ATTACAGAGGGTCATAGCATGTTAGTTGTCAGGGAAACAGATAAGGGATTCATAAGCAGAATGGGAAGGGGGTTTGGCATTTGGTGATGAGCTCCTCAAAGGCGTGGTGG----TGGATCACATTACTTCTGCTTGGTTTTCTGCTGAGCTGGTGCTGGAGTGATCGTTGAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTT

a score=4257
s chr3            92456848 160 + 160039680 TACAGGGGTGA----CAGTTGGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTG
s HiC_scaffold_1 137910211 164 - 233722169 TACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTG

a score=11049
s chr3            92456848 530 + 160039680 TACAGGGGTGA----CAGTTGGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGA------------GCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGG-AATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTC--CCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCT
s HiC_scaffold_1 137910307 522 - 233722169 TACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGT------TGG-------------------CAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAAC--CTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCT

a score=4554
s chr3            92456853 169 + 160039680 GGGTGACAG------------TTGGGG-GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTC
s HiC_scaffold_1 137968009 182 - 233722169 GGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTC

a score=6058
s chr3            92456863 350 + 160039680 TGGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACAT-TGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAG
s HiC_scaffold_1 137910638 314 - 233722169 TGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGA-------------CTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATC-----------------------TGTGGTTG-GCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAG

a score=6560
s chr3            92456864 394 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCAT------------------------GGCTCTGGTACCTTAG------AGGATCC------------CTGG------TCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTG
s HiC_scaffold_1 137910543 406 - 233722169 GGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCT---------GTGGTT---GGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCA-----------------TCTGTG--GTTG-----GCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTG

a score=4313
s chr3            92456864 179 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTG--AGCTTGGCTCAGAAGTACT
s HiC_scaffold_1 137910759 181 - 233722169 GGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCT

a score=4634
s chr3            92456864 169 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCT
s HiC_scaffold_1 137968009 165 - 233722169 GGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTC----CTTGGTT

a score=8215
s chr3            92456864 482 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAG-------------AGGATCCCTGG-----------TCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTC------------TGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGG-AATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGA--ACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTC
s HiC_scaffold_1 137910447 494 - 233722169 GGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGT-TGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCA-----------------TCTGTG--GTTG-----GCAAGGTTCAGGAACCGTTGGATGGCAAGGCTC--TGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=9696
s chr3            92456864 562 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTC-------TGAGCTTGGC-----TCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAAT-TGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGT--------TTCCTGGTTGTGGA-ACATCTGTGTGGCATGGCTCAGAGGTGG
s HiC_scaffold_1 137910423 551 - 233722169 GGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGT-TGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGT----------------GCCTGAGGATGGCAG--------GGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATG--------GATTCTGAGGTGG

a score=10120
s chr3            92456864 554 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGA-------------GGATCCCTGG-----------TCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATG--TAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGA------------GCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAAT-TGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAAT-TGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTC
s HiC_scaffold_1 137910351 590 - 233722169 GGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTC--AGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGT-TGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGT-TGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=10090
s chr3            92456864 556 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGA------------GCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137910183 568 - 233722169 GGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAG

a score=10004
s chr3            92456864 555 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCA
s HiC_scaffold_1 137910039 543 - 233722169 GGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGG------------CTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCA

a score=11328
s chr3            92456864 556 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATG--TAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGA------------GCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTC--CCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137910159 568 - 233722169 GGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTC--AGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCAC--CTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAG

a score=11718
s chr3            92456864 556 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137910087 544 - 233722169 GGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTC------------AGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAG

a score=14146
s chr3            92456864 710 + 160039680 GGGGGGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAAC--------------------------------AACAGTGTTC-----CCT-----------GGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTT----------------GGTGTTTCCTGGTTGTGG------AACATCTGTG--------------------------------------------------TGGCATGGCTCAG---------------AGG------------------------------TGGCTATGGGAACAAATTTTCCTTGTGGTGGAGGCTGACAAGGTTGCTTCACTTGATGCTGTTCAGGCTGAGGAGGTGGGACAAAGGGCTGCTTTTGCTGGTAAGAACTCATGCTTCAAAGGATGT-TGACCTAGAAACAAGACATCTGATT
s HiC_scaffold_1 137910255 840 - 233722169 GGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTC--AGGCACTTTGG-----------------ACTGGCAG-----------------GGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGCTGAGGTGGTAGGGTGCAGGGCTGCTTCTGCTGGTGAGAACTCATGCTTCAACAGTGGTGGGACCTTGAGACAGAAGAGATAATT

a score=7114
s chr3            92456868 430 + 160039680 GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAG-------------AGGATCCCTGG-----------TCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAAC-----ATTGATAGAGCATGG---TTCTGAGCT----TGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTT-TGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGT-TGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGT-TGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCC
s HiC_scaffold_1 137910475 466 - 233722169 GGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTG-GCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGA-CTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTG-GCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=5628
s chr3            92456868 268 + 160039680 GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGT-------TCTGAGCTTGGC-----TCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGAT
s HiC_scaffold_1 137910667 280 - 233722169 GGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGAT

a score=6742
s chr3            92456868 454 + 160039680 GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAG-------------AGGATCCCTGG-----------TCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTG------------AGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTT-TGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGT-TGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGT-TGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTC
s HiC_scaffold_1 137910379 490 - 233722169 GGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTG-GCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTG-GCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGA-CTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTC

a score=10059
s chr3            92456868 550 + 160039680 GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAG--CTT----------GGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTC
s HiC_scaffold_1 137910139 562 - 233722169 GGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTC

a score=7828
s chr3            92456868 437 + 160039680 GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATG--TAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGG-AATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATC
s HiC_scaffold_1 137910283 401 - 233722169 GGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTC--AGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGG------------CTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTC------------------------AGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGT-TGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACC

a score=12202
s chr3            92456868 551 + 160039680 GGCACACCTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGA------------GCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCA
s HiC_scaffold_1 137910115 563 - 233722169 GGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCA

a score=9476
s chr3            92456875 545 + 160039680 CTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137910002 533 - 233722169 CTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGG------------CCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAG

a score=11459
s chr3            92456875 543 + 160039680 CTCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTC
s HiC_scaffold_1 137910074 531 - 233722169 CTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTT--------AGGATTACAAG----GGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTC

a score=4260
s chr3            92456876 146 + 160039680 TCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTC
s HiC_scaffold_1 137910219 146 - 233722169 TCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTC

a score=8489
s chr3            92456876 505 + 160039680 TCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGG-AATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGG
s HiC_scaffold_1 137910315 493 - 233722169 TCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGG------------CTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGT-TGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGG

a score=10870
s chr3            92456876 544 + 160039680 TCAGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATG--TAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137910027 532 - 233722169 TCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTC--AGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGG------------CTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAG

a score=8965
s chr3            92456878 579 + 160039680 AGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTG------------AGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAGGTGGCTATGGGAACAAATTTTCCTTGTGGTGGAGG
s HiC_scaffold_1 137921662 579 - 233722169 AGTAACTTTTGAGGGGTTTGGCTCAGGAATCTCACATTGGCGTAGCTCTGGGGCCTTGGTGTATCCTGGCTCAGCAACTTTGCTGTAACTTGACACAGTGGTCTTGTCATATTCCGGCTGAGAGATAGTGGTATATTCTGGTGCAGGTACAATGGTGTATCCTGGTTGAGGGGCAGTGATACATCCTGACTCAGGGACCACAGTGTATCCCGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGACAGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGTTCAGGGACCACAGcatgtcccactgcagggacaggaTTGCATCCTGACTGAGGGACCACAGTGTGGCCTGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGACAGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGATCAGGGAC-----CACAGcatgtccca-------ctgcagggacaggaTTGCATCCTGGCTGAGG

a score=4365
s chr3            92456878 250 + 160039680 AGGAACCCTGGACTGGCATGGCTCTGGTACCTTAGAGGATCCCTGGTCAGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGC
s HiC_scaffold_1 137967975 233 - 233722169 AGTGATCGTTGAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGT------------TCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTC-----CTGGGGTGGAGGCTGGC

a score=7999
s chr3            92456894 526 + 160039680 CATGGCTCTGGTACCTTAGAGGATCCCTGGTC--AGGTATCTTGGTGTAGCCCTGATCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGAGCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909973 514 - 233722169 CAGGACTCTGGAACATTGG--GATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTC------------AGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAG

a score=9456
s chr3            92456948 472 + 160039680 TCAGGAACCTTGGCATGGGTGGGCTCTGAGGCATTCATG--TAGCCAGGTTCACGAACATTGATAGAGCATGGTTC-------TGAGCTTG-----GCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909979 484 - 233722169 TCTGGAACATTGGGATGACTGGGCT--GAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAG

a score=7813
s chr3            92456968 452 + 160039680 GGGCTCTGAGGCATTCATGTAGCCAGGTTCACGAACATTGATAGAGCATGGTTCTGA------------GCTTGGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909975 440 - 233722169 GGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGG-------------------ACTGGCAGGGC-----CCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAG

a score=7205
s chr3            92457021 399 + 160039680 CTGAGCTTGGCTCAGAAGT---ACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTG-----TGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909942 401 - 233722169 CTGAGCT-GGTACTGAAGTGACAGTTAAAGTTCAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGC-----TCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAG

a score=7955
s chr3            92457029 391 + 160039680 GGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAAT-TGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAA------TCTGGC------------------TCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909976 415 - 233722169 GACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGT-TGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAG

a score=7570
s chr3            92457029 391 + 160039680 GGCTCAGAAGTACTGGAAGGACTGGGCCCAGGAACCATGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137910264 391 - 233722169 GGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAG

a score=6926
s chr3            92457066 356 + 160039680 TGGCACAGCCTGGGTCAGGGATTTTGGTAGAGGATGGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAG
s HiC_scaffold_1 137921649 353 - 233722169 TAGCGGAACCTGG---AGTAACTTTTGAGGGGTTTGGCTCAGGAATCTCACATTGGCGTAGCTCTGGGGCCTTGGTGTATCCTGGCTCAGCAACTTTGCTGTAACTTGACACAGTGGTCTTGTCATATTCCGGCTGAGAGATAGTGGTATATTCTGGTGCAGGTACAATGGTGTATCCTGGTTGAGGGGCAGTGATACATCCTGACTCAGGGACCACAGTGTATCCCGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGACAGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGTTCAGGG

a score=5625
s chr3            92457070 350 + 160039680 ACAGCCTGGGTCAGGGATTTTGGTAGA---GGATG-----GCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909961 358 - 233722169 ACAGTTAAAGTTCAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAG

a score=6351
s chr3            92457101 321 + 160039680 GGCCCAGGAATTGTGGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAG
s HiC_scaffold_1 137909976 321 - 233722169 GACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGG

a score=5079
s chr3            92457119 301 + 160039680 TAATCTGGCTCTGTGATGTTGGT---AGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTG-----TGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909943 304 - 233722169 TGAGCTGGTACTGAAGTGACAGTTAAAGTTCAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAG-----GGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAG

a score=5196
s chr3            92457125 295 + 160039680 GGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137909976 295 - 233722169 GACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAG

a score=6354
s chr3            92457125 296 + 160039680 GGCTCTGTGATGTTGGTAGAGCATGATCCAGGAACCACGGTACGATCTGGCCCAGGGATGTTGGTAGAGCATGGCCCAGGAATTGTAGTATAATCTGGCTCTGTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGA
s HiC_scaffold_1 137910144 296 - 233722169 GGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGA

a score=10485
s chr3            92457227 356 + 160039680 GTGATGTTGGTAGAGCATGGCCCAGGAATTGTGGTATAATCTGGCTCAGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAGAGGTGGCTATGGGAACAAATTTTCCTTGTGGTGGAGGCTGACAAGGTTGCTTCACTTGATGCTGTTCAGGCTGAGGAGGTGGGACAAAGGGCTGCTTTTGCTGGTAAGAACTCATGCTTCAAAGGATGTTG-ACCTAGAAACAAGACATCTGATTGAGTGTTTT
s HiC_scaffold_1 137967976 354 - 233722169 GTGATCGTTGAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCT---TGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCTGGTGCTGGTGAACGTGAGGGGGTGCGGTGCAGGGTTGCTTCTGCTGGTGGGAACTCATCCTTCAACAGTGGTTGTTCCTAGAGAAAAACAAACGGACACAGTGGTTT

a score=3927
s chr3            92457274 146 + 160039680 AGTGATGTTTGTAGAACATGGCCCAGGCATCGTAGTATAATCTGGCTCAAGAACAACAGTGTTCCCTGGCTCAGGCACTTTGGTGCTGCATGGTTCTGGAATCTTGGTGTTTCCTGGTTGTGGAACATCTGTGTGGCATGGCTCAG
s HiC_scaffold_1 137967975 146 - 233722169 AGTGATCGTTGAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAG

a score=28461
s chr3            92458511 2061 + 160039680 CATAATGCTGCTCTTTATAGAAG--AGTCCCCTT-TCTGACCCTTAGCCTTATAGCTATAATTTGAGAAG----------TCA-----------------AAACATGTACAGCGAAAGTA---AAGTAGAT----AAAGTTTAGAT-------TGTCAAGAGTTCCCAACCACGACAAACAACACAGAC---TGTTAGAAAGTTCTAAATGGGAAGTCTTACCTTAGATGCTGAAGATCACTGGGTTCTTGGATTTGTTGAGGGATTTCTGGTCAGCTGGATTTTTATACAGAAAGTGAGCCCTTCCTTA----AGGAAGTAGATTTTTGAAG--TTGCTCTGCCTACATTCCAGCTTTTGTGAATGAAAATCTGTGGCTTAACATTGTATTCATGCTTACTATTTGAC-AGTATGTCAGCTGGCCTGATTCCATTGTCCACCCTTATGGTGTGGCTGCTGTGATGGGGATCAATCTTCTTGGGAGGTGGTGCATTAAATCAAGAGGAAGTGCTACCTAGACGCCCTGGACCAGAAGCAACCCTATATATCCACTAA----------TCCAG--------------TTCAGTTTTTCAGTATTTGGAGTGGATATAGAGAT-----------ATTTCTGGTTCTTCTGGAAGT---TGAGGGAAATGACAATGAAGAACTCAG------TGGAATGTCTGTGGAGTCATACGGGAGAGGGTAATATGAGGCTACAGGAAACCTGTTCTTTTCGCTGTGGAGGAAGCCCTTAAAATTCCAGACTGACAT--TTAGAAATTTTTTAGTTGAAAatttttgattaccacat-catattcacattcatgaggtaaaaagggatg-ttttgcttcatgaaaacactggttaaaaatcaaaccaaagt---------------------ttattattttatatc--acttcagat------ttcttattgcctc------tttgaggcaaatgcattaaaaattctctcagtcattttgaaatgtgctatgc---atcattgctcactTA--TGATGTCATGGTGCCATTAT-ATACAGTcccatctctactactctttctagcctccaataatcataattctacttttaactcccataaaatcatgtggtttggag--cacatataagcatgatcatataa---------tatttgtcttcctcattttacttaaca------cagttctatccatactctcagagatgaaatgatgtcattc-------ttagttatgatcaagtgtgatttcattgtgtatatgtatcccatttcctttatctattA---------------------------------------Gttttaaacagggctgcaataagt-ttggagtgcaagagtccctttaccatgttgatttcatttcttaaagggacatgcctagttgtgggattgcagggttgtaaagtaggtctaccttcatcctttt--------------ctgtattccataaaagctgtactaatttgcattctaccaataatgaatg--tgaattttcc----------------------------------------ttgttcttattggtaataa-cattgtcactgatgtgatatggtatctccttgtagtcctaatttgattttctctcatagttaggggtgctgagcttttaaaaaat-----atatatctattcatatcttcatttgacaaat-tccatac------ttctccctatattcttattggatttttaggtcattgaattctattgaatgattttaattctttgtatagtct--gcattaatttcttatcagatatacaattaaaagatactctttaaattctgaaattg----ttaattagcactgctgtttattttcattttattttattttgcagaagcctcatctaattccacttgtc-aactttggctttgtt--gtttatgttttgtgtgatgtc-aaaatttatttgctcagactagagtgttgaagaatttcccgtgctttcttctagtagttaagaaaatt-ttaccatatatttaagtcttttcatctattcac--agtcgacatctatagctagtgagggatagataatctgttataagccctctgcactgtgtatac-----------tgtctgcccctgcactgttaaggagtc--tgtcactgcagtcctg----ttttcactt-ctttgctcaatg-cagttggttgtaaatgcatggggcttatttctaagctctctatactgctccactgatcaaagagtatgggtttatgtcagtatcatgctgttttaatttctaacaatttgtagtgt
s HiC_scaffold_1 137923307 2275 - 233722169 CATAATGCCAATTTTTGAAGAAATCACTGCCCTTCTCTGATCTTCAGTCCCACAGCTATGAActgattagaaaataaatatcactTACATTAACTCCCTTAAATATGAACTACCAGTGCATTTAAATATATCCTTAAAAAATACATCCTTACATGTCAAGAagttctaataaaataaaatcacatggaTGAATACTAAGAAGTTCCAAATGAGGACTCTTACCTTGGATG---AAGTCCTCTTACCTCGCAGGTCTGGTGTGGAGTCTCTGGGCAAGTGAACTTTTATACAGAAAATGAGCCCTGCCTTACGGAAGGAAATGGAATTTTGGAGAGCTACTCTGCCTTCATTCCAGCTTTTGTGAAGAAAAATCTGTGGCTTAACCTTTT-TTCATGCTTGTTGTGTGACAAAAATGTCA-TTCATGTGTCCCCAGTGTGAACCTTTGTGGTGTGATTGCT---AAGGGTAATAGGCCTCTGGAGGGACGATGGATTAAATT-AGCAGTAGTG----CTGAACTGCTCAGACGAGAAATATCAATGCTTCTTTGCCAAGACCATAATTTTTAGCTTAAATACATATCTTCAGCATTTTAGTATACAAAGCAGATGTAGAGATGATCAAGTGGCATTTCTGGTTCTTCTGGGAGGCCATACAGAAGGTGGCAATAAATAAATCAGTTGTCATGGCCCATCCTAGGGAGCGGAAATGAAAGACTAACATGTTTGCTTTGGAAATGAGCTGTCTTCACTTTGGATGAATCTATAAAGATGCCATGTTAACTTGGttctaa---ttaaaattaaaaattat---ttgacacATACTTGTGCATGCTT-TGAAGTACAATAGGATGCTTTTTATTCATGTGTATAATGGGTAAA---CAAATTAATGTACACATAACCTTAAACTGTTACCATTTCTTTGTAACAAACTCAAAATTCTctcttctcattatttttaaatatatgaggCAA---TGTTAAATATATTGTTAACTA-TTTGTATCCTGCTGTGCTATATCAGAACTTATTCAGCTGATATTACAATAAAATTATCACTCTCCCCTAACCTACCCACTTTTCCCTACCTCTACTAA-------TTTACTCTCAACTTTCATGAATTCA-ATTTTTTAGATTCTGCATATGAATGAGATTATGTGATATTGTGTTTATTTGGCTGACTTGTTTTACTTATAATAATTTTAGTTCCATCCATGTTGTCACA-ATtatagcatttctttctttttttttttttgtcatctagT---ATCCCATTGTGTTTATGTAGCTcattttctgtattcattcatctgttgatgggtaatTAGATTGTTTTACACTGAAGCTATTTTAAATAGTACTGCAATAAACATTAGTGTATGGGTATTTCTTCAAC------ATTTCATTTT----GAGTATATGCACAATAGAGGGATTTCAGAATCGTAAGGTATTTCTATTTTTGGTTGCTTAAAAAACTTCCACATAGTTTTCCATAATGACTGTATTAATTTATAGTC--CCAAAAAGCAATGTCTAAATGTCCCCCTTGTTCTGCACCCTTGCTGAAATTTGTCATTTGTCATTTTGGCCTTTTTGataaaaatcatttcttcttGGGAGAGGTAATAATCTATTACAGTTTTA----GAATTTATCTGATGGTTGGTaatcttgggatttt------tttttcatgtctctGTTGggatcttcatttgagaaatgtctactcaGGGTTTTAGCCCAttattttaattggattttt---cttttgta----attgaggcattttatattattataaattctTAATATTAATTCCTTGTTagatatatgctttaaaataattttgtatcatctggagttggtttttttttgccaatactgtttgtttc--ttttgctatgctttT----AGTTTGATACAATCCCATGAgtctattttttgcttttttccccctatttttCATGTCATATCAAAAAAATAATTGCCTGTACCAATGTCATGAAGTATTTCCTCTGGTTTTTTTTAGTAGTTTCACAGTTTGGGATCCTGTATTTAAG-----TAATGAGTCCACTAACTTGATATTTGTAACTGGTTAGAGAC-TAGagtctagtttcattcttctgca-tacacacacacacacacaagtttccaaacatcatttgttgaaaagataaTGTCTTCcttgttatgtatctttttatttcctttgctaaaAGTCAACTGATGGTAAATACATGGGA-TTATTCGTGGGATCTCTCTCCTTTTGTATTGGTCTACATGTCTTTG--tatatcaatattat----------ttattatagatttGTAGTAT

a score=11785
s chr3            92473236 346 + 160039680 TAGGCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTG----ACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACTGATGGC----------------------------------------------------------------------------------------------------------------------CTAGTC----------------------------------------------------GGCCAGTTCCATGTTTCT-TAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAGCCCAA
s HiC_scaffold_1 215432006 520 - 233722169 taTGCTGTGAATTTATAGTGAATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAGAACCAATCCCTTGATGTCTACGATATCACTCTTTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAA

a score=11506
s chr3           92473238 339 + 160039680 GGCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTGACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACT-----------------------------------------------------GATGGCCTAGTCGGC-----------------------------------------------------------------------------------------------------------------------CAGTTCCATGTTTCTTAAAAGGCCTAGAGAACATATATC-GAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAG
s HiC_scaffold_1 59695627 510 - 233722169 GACAAGAAATATAAAGGGAAAAGGTTCTGACAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAAC--GCTGAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACTTGTTTACTGTAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgtTTGTCATTTTGGCAAATTACTGGAAGACAGTGGTTGCAG

a score=11505
s chr3            92473239 373 + 160039680 GCCATGAATTTATATTGAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTGACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACTGATGG-----------------------------------------------------------------------CCTAGTCGGC------------------------------------------------------------------------------------------------------CAGTTCCATGTTTCTTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGGCTGCTCTAGCCCAATGT----ATATTGTATGTTG--TAACCCCTGAATTA
s HiC_scaffold_1 172799160 551 - 233722169 GCCATAAATTCAAAGGGAATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGT-TCACAAAGCTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTACCCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctttccctttgtcTTCATCATTTTGGCAAATTACTGGAAGATGGTGGTTCTGGCCAAAAGGCAAAAGTTTGTTTGTTGTTTAGCCTCTCAATCA

a score=7838
s chr3            92473255 208 + 160039680 GAATGGGCTCCAACAGCTCAGGCTCTTTTCCGTTAGTCCTCATGAAGTATGCTTCTCTGACTGGTGTAGGCTGCTGCTTCAACTGTACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTCCTGATCATTCTCCTTCACATGCTTCAGAAAGCTGTCTTTGCTATTTGAGTGCTTGATGTGCTCAATCTGCACATTGATACTGATGGC
s HiC_scaffold_1 181454013 193 - 233722169 GAGTGCAGTCCAGCAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAGGGCGGGCTGGTGCTTTAGTTGAACCCA---------------GGCTTCCTTCTTTTTCAGATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGC

a score=6198
s chr3           92473459 109 + 160039680 TGGCCTAGTCGGCCAGTTCCATGTTT-CTTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCT-TTTTCCCTTTGTGTTCCTCATTTTGGTGAGTTACTGAAAGATGG
s HiC_scaffold_1 52692647 111 - 233722169 TGGGCCAAAGGAACAACTCCATGTTTTCTAAAAAGGCCTAGAGAACGTATACTGGGTTCCCCTCCTCTTTTCCCTTTGTGTTCGTCATTTTGGCGAATTACTGGAAAATGG

a score=4549
s chr3            92473486 68 + 160039680 TTAAAAGGCCTAGAGAACATATATCGAGTGCCTCTCCTTTTTCCCTTTGTGTTCCTCATTTTGGTGAG
s HiC_scaffold_1 181454545 68 - 233722169 TTAAAAGGCCTAGAGAACACACGCCAGGTTCCCCTCCTCTTTGCCTTTGTGTTCATCATTTTGGCAAG

a score=75876
s chr3            92483076 3628 + 160039680 [encoded data, 4100 characters]
s HiC_scaffold_1 137966708 3824 - 233722169 [encoded data, 4100 characters]

a score=24736
s chr3            92483835 790 + 160039680 ATCTTTAGGCAACTTTTAGCTATAGACCCACTGACCAGTTTTTGTTGTGCT---------------AGTTCCTCCTTCATACTGAGAAAGT--AATGATAG--TTCAGGCAGCCACTGATACATACACAACAAAGTATGGAGTTAAATGGCATTTAATGGGGGGAAAATATTGACCATACACTTGTCTCACTCCTCACCCCCTTCAGATGAATCCTGAGCCATGAAAAGTGTAGCCATTCAATATGACTTTGGGCAATGTTAAGAGGCTCAGGAGCCCTTGAAGATGAGGATGAGAGT-CA-ACTTTTTAGGTGGTGCAAGGAGAGAGGGATTAAGATTGAAGGTCACAGCATTGGTAGCACAAGGCAAT-GGGACTCATAAGCAGGATAG-ACAGCAGCCTCAGCATCTGGTGATCAGGTCTTCA--GGCATGGCTCTGGACAATATTACTTCTGCTTTGTCTTCTGCTGGTATGGTGATGGAGTGACAGTTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137909492 800 - 233722169 ATCTGGAGCCAACTCTCAGACAAACAACCAGGGTCAGATGCCTGCTTTGCCCTCTCATCTCTGTAAAGCTCCTGCTTTAT---GAGGAAATGGAATGAAGGAATTGAGACAGACAGCAATGCA--CACAGCCAAGAGTGGAATGGAGTGA-ATTtaatggagcaaaa----------caaaattgaatCACTTGTTTTCACCTTAAGACAGATTTTGAGCAGATGAGAACCAGCTCAGGTACCAAGTTTCTCAGCCTAATTTAGAGGCTCAGGAGTGTAGGAAGGAAAACTTCATAGCACATACTTTTAGGATAGTA-AATGAGAGAGAGACTGTGAATCAAGGTGACAGCAT-GCTTTTGTGAGGCAATTGGGATCCATAAGCAGAGTGGGAAAGGGGTTTCAGCATCCAGTTATCTGATCCTCAAGGGCCTGGCTGTGGATCACATTACTTCTGTGTTGTCTTCTGCTGAGCTGGTACTGAAGTGACAGTTAAAGTTCAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCT

a score=6994
s chr3            92484261 383 + 160039680 TTCTGCTTTGTCTTCTGCTGGTATGGTGATGGAGTGACAG-------------TTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAACAGGGTGGCAGGGATCCTTGGTTTTGGGGGC--------ACAAGGTT---------------------CCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTG
s HiC_scaffold_1 137967955 317 - 233722169 TTCTGCTGAG-CTGGTGCTGGAGTGATCGTTGAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTT------------------------------------------------------------------------------------------------GGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTC-----CTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCTGGTGCTGGTGAACGTGAGGGGGTGCGGTGCAGGGTTGCTT------CTGCTGGTG

a score=5229
s chr3            92484271 217 + 160039680 TCTTCTGCTGGTATGGTGATGGAGTGACAGTTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGG
s HiC_scaffold_1 137910826 204 - 233722169 TCTGTGGTTGGCAAGGTTCAGGA---ACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGC----------TGAGGTGGTAGGGTGCAGG

a score=14871
s chr3            92484271 292 + 160039680 TCTTCTGCTGGTATGGTGATGGAGTGACAGTTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC
s HiC_scaffold_1 137910394 289 - 233722169 TCTTAGACTGGCAGGGTTCAGGA---ACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAAC

a score=22237
s chr3            92484271 629 + 160039680 TCTTCTGCTGGTATGGTGATGGAGTGACAGTTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGG------------------------------------------------------------------------TTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAG------------------------GGCTCAGGTGCCTTGGGGTGGCAG------------------------------------------------GGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAGTGCAGGGCTGCTTCTGCTGGTGGGAACTCATGGTTAGATAGCACTTGGTCCTGGAAACAGAAAAGACAATTTAGTGATTCATTGAAAGAGAAGGTAACCTCAACATCAAG------TCAATTTAATTTCAGGCCCCTTTAGAGAAAAA-GAGCCCCTCTCCATGCTGACTTCCACACTTGAAAATAAAATATGGTATGATCATTTCTGGACTTTTAAACATGATTAGCAGAAGTATGGTTTGCTCT
s HiC_scaffold_1 137910490 755 - 233722169 TCTTAGACTGGCAGGGTTCAGGA---ACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAGCTGAGGTGGTAGGGTGCAGGGCTGCTTCTGCTGGTGAGAACTCATGCTTCAACAGTGGTGGGACCTTGAGACAGAAGAGATAATTT--------------AAACAGGGAGAACTCAGAAAGAAGAAATGCCCAGTGCCACTTAAGG--TCTTTGAAGAAGCATaagtctttctttctcct---------cctttaccACAAAGAATACTTTCATGATTTCTGAGTCTTTGAAGAGAAGGAATCTAAATGTGATCTGTTCT

a score=8501
s chr3            92484287 657 + 160039680 TGATGGAGTGACAGTTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAA---GGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAG---GGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGG-GGTGGCA-----GGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAACAG---GGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAGTGCAGGGCTGCTTCTGCTGGTGGGAACTCATGGTTAGATAGCACTTGGTCCTGGAAACAGAAAAGACAATTTAGTGATTCATTGAAAGAGAAGGTAACCTCAACATCAAGTCAA-----TTTAATTTCAGGCCCCTTTAGAGA-AAAAGAGCCCCTCTCCATGCTGAC-----TTCCACACTTGAAAATAAAATATGGTATGATCATTTCTG-GACTTTTAAACATGATTAGCAGAAGTATGGTTTGCTCTTGTCTGTCTCAGTGGGTTCTTTC--CTTACTCTCATTCTCCCTGGT
s HiC_scaffold_1 137922064 677 - 233722169 TGGTGCAGAGACAGTGGTGCATCTTGGCTCAAGGACCACAGTATGTCCCACTTCAGGGAC---AGGATTGCATCCTGACTGAGGGACCACAGTGTAGCCTGGCGCAGAGACAGTGGTGCATCCTGGATCAGGGACCACAGcatgtcccactgcagggac---aggaTTGCATCCTGGCTGAGGGATCACGGTGTGTCCTGATCCTGGTGCAGTGACTGTGGTACATCCTGGATCAAGAACTGTGATGAAGTAAGGCTCCGCAATCTTGGTGGTTCCAGGTTGTGGAACAGTTGGGTGACTTGCCTCCTTGGTGATGGGAACAAATGGTACTTCAGAGGGAGGCTGGTAGGGTTGTTTGGCCTGCTCCTGTTGAGGCTGAGGGGGAGGGGCAAATGGCTGCTTCTGCTGGTAGGAACTCATGCTACAAAGGATGTTGGGCCTGCAGACAGAAAAGCCTA-TTAGTTATTTGGAGGAACAAGGAGGGAACTCAATTTAATGACAAGAATCCCTCATTGTGTATCCTTTCAGAGGTAAaagattctcttttctttctttctgtgttcttaCATTTGAGCTGATAGGATGTTTCAATGATCCCTGCAAGGTTTCAGGGCAAAAGGCA-AAGT-TGATTTGTTTAGATACATGTGAATGGAGcccttctttttacttttttcctaccTGAT

a score=4048
s chr3            92484290 139 + 160039680 TGGAGTGACAG------------TTGAGG-GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGG
s HiC_scaffold_1 137968079 152 - 233722169 TGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCTGGTGCTGG

a score=7827
s chr3            92484290 179 + 160039680 TGGAGTGACAG------------TTGAGG-GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTC------------------TGGCACCT------TAGGCTGGCAGGGCTCTGGCACCT
s HiC_scaffold_1 137968007 216 - 233722169 TAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCT

a score=16548
s chr3            92484290 359 + 160039680 TGGAGTGACAG------------TTGAGG-GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGG-------ATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCT
s HiC_scaffold_1 137910325 375 - 233722169 TGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTG-------GACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCT

a score=16698
s chr3            92484290 359 + 160039680 TGGAGTGACAG------------TTGAGG-GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCT
s HiC_scaffold_1 137910229 375 - 233722169 TGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCT

a score=15575
s chr3            92484296 306 + 160039680 GACAGTTGAGG--GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTC
s HiC_scaffold_1 137910054 311 - 233722169 GACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTC

a score=15822
s chr3            92484297 312 + 160039680 ACAGTTGAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGG-------GGCACAAGGTTCCTGGGGT
s HiC_scaffold_1 137909985 322 - 233722169 ACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGAT

a score=4720
s chr3            92484303 110 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTC
s HiC_scaffold_1 137968081 110 - 233722169 GGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTC

a score=9663
s chr3            92484303 182 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTC
s HiC_scaffold_1 137910759 182 - 233722169 GGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=15593
s chr3            92484303 322 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910183 325 - 233722169 GGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTT

a score=15680
s chr3            92484303 322 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910087 325 - 233722169 GGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTT

a score=16205
s chr3            92484303 401 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGG-------ATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAG---TGCAGGGCT---GCTTCTGCTGGTGGGAA--CTCATG----GTTAGATAGCA
s HiC_scaffold_1 137910447 416 - 233722169 GGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGG-------TGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCA

a score=16520
s chr3            92484303 351 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGAT------CCTTGGTTTTG-GGGGCACAAGGTTCCTGGGGTGGT-----------------GGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGA
s HiC_scaffold_1 137910039 378 - 233722169 GGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGA

a score=16957
s chr3            92484303 351 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGA
s HiC_scaffold_1 137910231 354 - 233722169 GAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGA

a score=17587
s chr3            92484303 351 + 160039680 GAGGGGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGA
s HiC_scaffold_1 137910327 354 - 233722169 GAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGA

a score=5914
s chr3            92484307 106 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTC
s HiC_scaffold_1 137910835 106 - 233722169 GGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=6609
s chr3            92484307 146 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTC------------------TGGCACCT------TAGGCTGGCAGGGCTCTGGCACCTTAGGCTGG
s HiC_scaffold_1 137968061 170 - 233722169 GGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTTCACCTGGTGCTGG

a score=7496
s chr3            92484307 205 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCT-----------GGCACCT-------------TAGGCTGGCAGGGCTCTGGCACC--TTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGG
s HiC_scaffold_1 137910811 219 - 233722169 GGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAG------------CTGAGGTGGTAGGGTGCAGG

a score=10943
s chr3            92484307 202 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTC
s HiC_scaffold_1 137910739 202 - 233722169 GGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=12433
s chr3            92484307 226 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTC
s HiC_scaffold_1 137910715 226 - 233722169 GGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=9610
s chr3            92484307 196 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACC------------------------TTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCA
s HiC_scaffold_1 137910643 220 - 233722169 GGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCA

a score=10812
s chr3            92484307 196 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACC------------------------TTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCA
s HiC_scaffold_1 137910619 220 - 233722169 GGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCA

a score=14254
s chr3            92484307 337 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACC------------------------TTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTC---------------------------AGGAACAGGGTGGCAGGGATCCTTGGTT--TTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTG
s HiC_scaffold_1 137910667 379 - 233722169 GGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCTTGATTGGAGAGACACATGGATTCTGAGGTGGAGGCTGGCAAGGCTGCTTTACTTGTTGCTGCTGCAG-----CTGAGGTGGTAGGGTGCAGGGCTGCTT------CTGCTGGTG

a score=15621
s chr3            92484307 346 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137910019 349 - 233722169 GGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGG

a score=15807
s chr3            92484307 346 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137910115 349 - 233722169 GGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGG

a score=16100
s chr3            92484307 318 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAACA---GGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910475 321 - 233722169 GGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCT

a score=16286
s chr3            92484307 347 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---------------------------AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGA
s HiC_scaffold_1 137910403 374 - 233722169 GGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGA

a score=16670
s chr3            92484307 346 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137910283 349 - 233722169 GGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGG

a score=16215
s chr3            92484307 295 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTC
s HiC_scaffold_1 137910163 298 - 233722169 GACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTC

a score=16730
s chr3            92484307 318 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATC----------------CTTG--------GTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137910499 345 - 233722169 GGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTT

a score=16947
s chr3            92484307 346 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAACA---GGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137910379 349 - 233722169 GGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGG

a score=17415
s chr3            92484307 347 + 160039680 GGCAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTT-------CCTGGGGTGGT-----------------GGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGA
s HiC_scaffold_1 137910139 374 - 233722169 GGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGA

a score=15987
s chr3            92484309 344 + 160039680 CAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137910213 347 - 233722169 CAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGG

a score=16024
s chr3            92484309 344 + 160039680 CAGGGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATC-----CTTGGTTTTGG--GGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137910309 347 - 233722169 CAAGGGTCAGGCACCTTGGAGTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGACACCTTGGGGTGGCAGGGCTCAGGCACTTTGGACTGGCAGGGCTCAGGCATCTTAGACTGGCAGGGTTCAGGAACCTTAGGATGACAAGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGA-------TGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGG

a score=7767
s chr3            92484312 149 + 160039680 GGCTCGGGAACAACAGGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTC
s HiC_scaffold_1 137910792 149 - 233722169 GGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTC

a score=8444
s chr3            92484327 356 + 160039680 GGGTGGCAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAACA---GGGTGGCAGGGATC-----CTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAGTGCAGGGCTGCTTCTGCTGGTG
s HiC_scaffold_1 137967985 242 - 233722169 GAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTG------------------------------------------------------------------------------------------------CCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGG-----CAAGGCTCCTTGGTTTTGGGGACACATGGCT------CCTGGGGTGGAGGCTG---------------GCAAGGCTGCTTCACCTGGTG

a score=13854
s chr3            92484333 320 + 160039680 CAGGGCTCAGGCGCCTTGGGGTGGCAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137909973 323 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAGGGTTCAGGCACCTTGGGGTGGCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAGG

a score=12302
s chr3            92484357 257 + 160039680 CAAGGCTCTGGTGCCTTAGGTTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTT-------CCTGGGGTGGTGG
s HiC_scaffold_1 137909973 267 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGGGACCTTAGGATTACAAGGGTCAGGCACCTTGGAGTGGCAG

a score=10904
s chr3            92484381 221 + 160039680 CAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTC
s HiC_scaffold_1 137909973 224 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTC

a score=10964
s chr3            92484404 266 + 160039680 GCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAGTGCAGGGCT
s HiC_scaffold_1 137910644 248 - 233722169 GCAGGGCTCAGGCATCTTGGACTGGCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCT-------------CTGGTGC--CTGAGGATG------GCAGGGCT

a score=10554
s chr3            92484404 290 + 160039680 GCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAACA---GGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAGT---GCAGGGCTGCTTCTGCTGGTGGGAACTCATGG
s HiC_scaffold_1 137910668 294 - 233722169 GCATGGCTCAAGAACCTGGGGTTGGCAGGGCTCTGGCACCTTGGGATGGCAGGGTTCAGGCACCTGTGGTTGGCAGGGCTCAGGCACCTTGGGGTGGCAGGGCTCAGGAACCTGTGATTGACTTGGCTCAGGTGCTTTGGGATGGCAGGGTTCAGGCATCTGTGGTTGGCAAGGTTCAGGAACCGTTGGATGGCAAGGCTCTGGTGCCTGAGGATGGCAGGGCTCAGGCACCTGGGGATGACAGGGCTCCGGAAGCTTGGTGTGGCAGGGCTCCT--TGATTGGAGAGACACATGG

a score=9336
s chr3            92484405 209 + 160039680 CAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGT-------TCCTGGGGTGGTGG
s HiC_scaffold_1 137909973 219 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGATGACAAGGCTCAGGCATCTTGGGGTGGCAG

a score=6603
s chr3            92484421 203 + 160039680 TAGGCTGGCAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAA---CAGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGC
s HiC_scaffold_1 137909943 204 - 233722169 TGAGCTGGTACTGAAGTGACAGTTAAAGTT--CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGC

a score=7782
s chr3            92484429 224 + 160039680 CAGGGCTCTGGCACCTTAGGCTGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATC------CTTGGTTTTG-GGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGG
s HiC_scaffold_1 137909973 227 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGAACCTTAGGA-------TGACAAGGCTCAGGCATCTTGGGGTGGCAGGGCTCAGG

a score=5533
s chr3            92484450 131 + 160039680 TGGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTC---AGGAACAGGGTGGCAGGGATCCTT
s HiC_scaffold_1 137968084 134 - 233722169 TGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTTGGTTTTGGGGACACATGGCTCCTGGGGTGGAGGCTGGCAAGGCTGCTT

a score=9525
s chr3            92484451 178 + 160039680 GGCAGGGCTCTGGCACCTTGGGGTTGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTT
s HiC_scaffold_1 137967989 181 - 233722169 GGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCTT

a score=7769
s chr3            92484476 149 + 160039680 GCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCT
s HiC_scaffold_1 137967990 152 - 233722169 GCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTT

a score=5388
s chr3            92484477 177 + 160039680 CAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGA
s HiC_scaffold_1 137909973 180 - 233722169 CAGGACTCTGGAACATTGGGATGACTGGGCTGAGGCACTTTGGGATGGAAAGGTTCGGGCACCTTGGGGTGGCAAGGCTCAGACACATGAGGTTGTCAGGGCTCAGGCAACTTGGGGTGGCAGGGTTCAGGCACCTTGGACTGGCAGGGTTCAGGCATCTTGGACTGGCAGGGCCCAGGA

a score=5645
s chr3            92484495 201 + 160039680 GGGTGGCAGGGCTCGGGTGCCTTGGGGTGGCAGGGCTCTGGCCCCTTGGGGTTGCAGGGCTCAGGAAC---AGGGTGGCAGGGATCCTTGGTTTTGGGGGCACAAGGTTCCTGGGGTGGTGGCTGGCAAGGCTGCTTCACCTGCTGCTGGTGCAGCTGAGGAGGTACAGT---GCAGGGCTGCTTCTGCTGGTGGGAACTCATGGTT
s HiC_scaffold_1 137967985 205 - 233722169 GAGGGGCAGGGCTCAGGCACCTTAGGGTGACAGGGCTCAGGTGCCTTGGGGTGGCAAGGCTCAGGTGCCTTGGGTTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGCTCAGGTGCCTTGGGGTGGCAGGGTTCAGGAACATTGGGTTGGCAAGGTTTAGGCACTTCATTGTGGCAAGGCTCCT--TGGTTTTGGGGACACATGGCT

a score=42099
s chr3            92493079 1670 + 160039680 ACActgtgagatttaatttatcttacctgtatcttaggagtgataatatttgccttcagaactgttattacatgaaattacacatgcaaagcaact-ctatggtgactagcacaca-tcaatgaacagcagATAGCAAGTTCATTT-TCCTCAGGGTTTTAACCACAGCTATTATTAGAAAATCATTTATAATGACTCAGAAATTTCTTTTATTTTCTTCATTTTGAAG----CAGTCACTCATTTGTTGAACACATAGTTGCTGAATGACAATCAAATGGCAAGCATGAAATCCTAGTTTTGAGAAGTATGGTGAAGAAATAGGCAACACTGTATGCACTTCCTGGAACTAAACTAGATCATAGGAAGAAATTTTCCCAAACTCTCATAAGAATCTTGCTAAAATGTTG--CTAAGGATGCAATTTAATTTTTACATTAATATTTTCTAATATGGAATTAATATTAATGTTTATGAAAGAATATTAGGAACTGATATTAATTCTAATAAGATAAA--TAGCTAAGAGAAGGAACTATACAATCTTGTTTGTATAAACAGGCCTTGGGTAATTTTGGGGGTCAGATAATTTGGGCAACAGTAGAGTATAGGCCCAATGCCTTTTCTTTCTTGATTAAAATTAACATCATCTGGTACCTTT----AAACTTTTACATGTCCAAGCTTCAT--CATAGTTTTCTTTAGTCAGCATATGTGTGCTTATATGTGTATATGTCTTAATGTCTACTGATAAAACTAGTCTTGAAGAATCACTAGTATAAAAGA------------AGTATCTGAATCAAGTAGAACAATCACAATCCTGTAAAATAGCATCACAAGTAGAAGGAGATTCAAGTGGGTGCTAAGGTGCCTGGGAAGATGTTGATGTTGATGTTGATGAGTCTAGGTGCTTTTGAGTGTAGGTGTTTGGCCTAAGGACACTGGGAGCCTTGTGACACAATTAAGTTCCATCTAAGGAAGACTAAGTACTTCCATACACCCATGTTCCTCACTCTCCCTCTAGGGAATCATCAAAGGGCAGGCTCAGGCTTGTTTAGCAGGTCTGGGCCTAGACCCAGTAGCCTACGGCCAGGAGATGATCCCGTGTCACCTTCATGGCACTGTAACATCTGTGGTATGGAGCCTCTGTGCTGTGATAAAGGACC-ATTTTCCAGTCTCCAGAAACCCTCTGGCTAGGCCAAATTAAAACCTTTGAGGAGCAAAATAATATCAAAA-----------TTTCATTTTCTGCTATTTGACaagaactacatttccctctacctctcatattcagtgatatgtgcctgaaaatttaactgacagaatgcaaactgacaggagaaaggct-tacaatttttatttatatcaatagttatacattcactgaagcttcataaaaaaagaagtgtgtactcaaggaactgattagattt--------aaaatatagttctaaaattcatatgtaactacaaaaag--cccaaataaccaaagt-gtttttaagacaaaaaccaaagctaggttcgtaagtactacctgatgtcaaagtattctacaaagctattgtaactaaaacagtgtggtattg--acattcacagaccaatgaaatgtaatacagagccaggaagtaggaacatacatttaatatgcaagtagtcattttgacaaaggtgttgagagtctacaatggggaaagagca
s HiC_scaffold_1 137973250 1567 - 233722169 ACGCTATGagtctg---ttttcttatttgta-cTTTGAAATAATAGTATTTGCTATCAGAGTGGTTATTAAACAAGAT-ACACATGCAAAACACCTTCCAACATGAATAGAACACAGTGGATGGGTAATAGATATCAAGCACATCTGTTCTCATTATGTC--------CTATTATTAGAAACTCATCTCTAGTGACTCAAAAAATTCC---ATCGTTTTCATTTTGAAGTACTCAATCACTCATTCATT-AATACATC-TTGTTGAATAACATTCAAAGGTCAAGTATGAAGTCCAAGCTGTATAAAATCTAGTGGGAGAATAGGCAATATTCTATGAGATTC-TGGAATCCACTCCTATTAATGAGAAATGTTTCCCC--------------------------CGTTGACTTAAGCACACAAATCAATTTAGACCTTGCAA---------------------------------AAACTATACTTACAATC--TCCCCATCTTAGTGGTATAGACATAGCTAAGAGAAGGCCCGATAGATCTGCATTTCTA-AAATATGAATCTAGTAGTTTTCATGATTAAACAGGTTGGGAAACACTGGTTACTAAACACAATGAGTTTTCAACTTTGATGGCATTTGACATCTTctagtatcttttttaaaagtct---atgtcTGTGCTCCATTGCAAAGTTTTATTCAATCAAAAATTTTAAGTTCCTA------------------------GACAAAAGTAGGATTGGA-AATCACTGCTGAACAAAAGTATCAGCTTCTAGTATCTGACTATGGCAGGAGAGTCTCAGTC-TGTGAACTA---CTCCAGGTGAAAAAAGGTACAGGTGGTTGCTAAGGTACTCGGGCAGAACCTGATGTTGATGCAA------TTAGATGCTAATGAATGTAGGTGTTTGGCCTGAGG-CACTGGAAGCCCTGTGAAGCAATTAAGTCCCATAAAAGGAAGACTAAATACTTCCACACACCCTTGTACCTCACTCTCCCTCCAGAAAGACATCAAAGGACAAGCTTAGGCTGGTTTGACAGGGCT-GTCCTATGTTCAGTACCCTAGAGCCAGGAGTTGATTTTGGGTCACCTTCTGGACACCATTAGATATATAGGGTGAA-------TGGTGAGTTAAAGGCCCAAACTTCCCGCATCCAAGAAGCCTCTGGCCAGGCTAGATTATGACCTTTGCAATCCCAAAGtacttaaaaaatacttttttttttttttttctgctgttgaaCAAGAAAATCTTTTAC-------------------TGATGGGAGCCTGAAAAGTTACCTGAT-GAAGACAGACTGATAGAAGAGAAGCCAtacaaactttatttatattaatactt-TACATGCATAGAAGCTTCAC----AGAGGAGTGAAAACTAAAGGAAGTGGTAAgattcagaaacagaaaataaaatcttaaaatttatacaaGATCGTAGAAGATCCCTAAGTAGTCAAAGCAGTCTTGAATGAAAAGAGCAAAGCTGAATGCA-ACATACTACCTGACTTCAAACTGTATTATAAAGCTGTAGTAACCAAAATAGCATGCTACTAGTACAGACACAGACTGACAGAAGAGAATAGAGAGCCAAAGCATAGCTCCATGCA-TTGACATCTAACTG---ATTTTGACAAAATTGCCATGAGCATTCAATGGAGAAAGAACA

a score=85316
s chr3            92499561 5888 + 160039680 [encoded data, 6576 characters]
s HiC_scaffold_1 137980462 5831 - 233722169 [encoded data, 6576 characters]

a score=9993
s chr3            92505576 342 + 160039680 ATTTAAGACTGAGCAAGTGACAGCTCATCTTTACAATCACAATCATGCCACACTTGCTTTATCTCAACTCCTGATTGACATATAACCAACAGTCATGACATAGAACATTTTAGTTTCAAGTTTCCAGTTTTTGCCTCCACCATTTTCTTAATCCGTCAACGAACAGTATGGTGGATGCTAATTACAAGAAGAACTTCTGACCTTTTTGT--------AAATGTAA---GGAATCATTCTACCCCCTGATATGT----TTGCAAATAAGAGGCTTCA--TTGCCATTGTTAGGTGTTTAGAGTGATAGCCTGAAAA--------ATAGAGAGAAGAGTGAGA-------------CAGAA--CTTTATCCCCTCCCTCTCCAT
s HiC_scaffold_1 137986935 366 - 233722169 atttaaaaccAAGCAAATGACAACTCATCTTTACAATCATAATCACATCACATTTGCTTTATCTTAATTTCTAGTTGATACCTATCCAGAAGTCATGGCTCAG---ATTTTAGTTTCAAGTTTC-------TCCCTGCACTGT----TTAATCAGTCAACAAATACTGTAGAAGATATTACTT--AGCAAGAACGTGTGACCTGCTCTTACTGGAAGAAATATAACATGATATAGTCTTACCCTCTAATTTATCTGACTGCAAGTCAGGTGTCTGGATATATAAGTGTTAGATGTTCTGTATGATAATATTTAAAGTGGTCACATGGAGAGAGACTAGAGAATTAATGAGTCTCCAGAAATATTTATCTTCTCCCTCCCTAT

a score=12505
s chr3            92507449 677 + 160039680 acttgtaggagaatgtaggtactctaatggatcaaccatggttcctgaaccttcattccaatctcATTTTGGCTTAATAAGTTGAACC-CATAATTTTCTAGTACTTTCTGAACTGTCTTATATTCTCAAATTCA-ATTTGA-----------TGTTTATT---ACAGTCTATC---CTTTATATTCCATATACTTGAAGATCATATTTACTTTAA------GAATGCTTGG---CTA---TCTTATACATG--------TCAGTAA------TTTTTATACCCAGCAAAAGTACAAGTTCCCTATGAGCAAGAAAGGATATTTAGGACAGAACTCACACTCTAGTCACTGGTGACTGGCCAACTAACAGACTAACAAGCAATTGAGAATTCCAGCAACTAA--AAGATTCTGCCCAGCAAATGAGTCAGTGGGTGAGT---------------GAAATGAG--GCTAAGTGCATACACGAGAAATGAGCTCACAGCATAGCTACCTGACTACGAAGCTCACTGACCAACCAACTAGCAGGCTGATGAAGTTGTTAAGCAATTGATTTCCTGA---------TGACTGGCTTGCTGGGGTTTAGCTTTGTAAACCAGATACTGAAATTGT--TTTAAGAAGGGAAACTCCACTGACAACAAGTGAGTAAGAGTACACCAAAGAAACCATTTTAATAGGGACCCCCTAAGAAGTATATCATATGACT-TTCCTATTATTTC-TGATTTTTTTTCT
s HiC_scaffold_1 137989077 727 - 233722169 ACTTATAGG-GAGTAAATTTAATTGAGTGTTAAAACAATAGTTCCACAGACTCTTCTC---------TTCTGCTTTATAAGCAGAAACATGTAGTTCTAGGATACTTTTTGGAGTAAGCTGTgttttcaagttaatatttaaatatctctCCCTATTTATTTCAACAATACACATGACCTTATTTCCCTTCTCCTTGAAGATC---TCTGCTGAAATCAGTAAGATACTTGGAGCCTAGATTTTTATATATGGATATGTGTGGGTAGAGGAGTTCCTTACCTTCAGTTGAAGTATAAATTTCCTAAGGGCAAGAA-GGACATTCAAGACAGAACTTACACCCTCATGACGGGTGGTTGACCAGCTAATAAACTA----TTAATTGAGTGGTCTAATGACTCAGCAGGATGCTGCTGAGTGAGTGAGTCGCTGAGTaagcaagagaaagacagaagaagtGAGAAGATACCTGTATCAGTGAGAAATGAGCTAACTAACTGGCTGCCTAACTGGCTAGTTCACTGAACAACTGATTAGCTGGCTGGTTGAGTGGTTTACCAACTGATTTCCTAACTTGTGGATTGGCTGACTGGTTAATAGTTAACTTTGAAAAGCACAACCTG---TTGTAGTATAAGAAAGCTAGCCCTGTTAGAAACAGGAGATACAAAGGGCATAAAACAAAAAGTGTGCTTTGTG------TACAAAGTAAATTATATGAGTAGGactattatttcttgattttattttt

a score=16228
s chr3            92513036 923 + 160039680 tgtaacgtctactcactgatttc---caagtatatga-------tacactattaCTGCAGTCTTCTGAACCATCTCCCATGAAGCACTGCAGCCTTTGATCAATGCTTCTGCCTCTGTGA--------TTTGGATTGCATATATGAATGAAGCCTTGATGTATTTGTCTTACCATGGCAGCACCAACTCATTGGAATCTCAGCTCTTGAGCTAAAATTGGATGGTGTTGGCCAAGTTTTGGTTACCTCCTTAAATTTTGTTTTCACCATTTTCAAAACTAAAATCTTTATGTTTTCTGGCAATAATGACTATTGTGTAGGATAAATATGTTTAGACTGGAGTCTTGT------TATTATAGTGACTGCCTGCTTTTAAACAGCTGGAAAGATGTGTATGTGTTGGTTAAGTGGAGGCAACAGAGTTCATGTTTAGCTCAGATTTTCTCTATGCTCTCTTTA--CACTTCTGTAGAAACACGTGGGTGGCCTTTCCCTCCCAATTCACCTGTGTTAAAATTTTCCATAACCATGACTAGCTTGGAGAAGATATTAAATAAAGATTAGAATGAGTCACTTCATATTGAGTCAGAACTGGAATGAAGCTGAGCATTAACCCAGCAAGTCAAACATTAGTTGCTATCAAGCAGAGATTTCCCTATACTGGAGTATTATAgaaatgaaatgaaatgaaatgaaatgaaatgaaatgaaaCTGCACACAAAAAGTTAAGAACAACATGACCTAGAGTAAGAAACAGGCTCGACCAAAAC----CAGAGGAGAGAACCTGGAAAAAGCCAAGGCAGCAACTCAGGTCTCAGACTCTCTTTCCAGTACTCTCTACTTGGAGCTACAGTGAACTTAGAGTTCAT-TAACATCGAC-------TTATCCTGGAGCCCATCAGCCTTTGTAGGTAGAGGAGGTTCCAGCCAAAGGGCTGCCTAGAAAGCACA
s HiC_scaffold_1 138020011 843 - 233722169 TGAAACCTCTTATAATtgatttctctcatttatttgaaattctctactcTAACATCTCCCCCTACTTTGCTAGCCCCTATTAACCATT-----CTTCTATT-----CTCTGTCTCTATGAGCTccatttttagattccacatataaatAAGGGTATGAAATATCTGTATTTCTGTGCCAAGATAAATATAAT----TCCTAGTTCTTCAGCCA---TTAAATGAAaatag-------tttgttatttttttgaatttttgtttcttcatttgcaaaatgagAATTACTAT-TCATATGAGAATGATGACCATTATATAAGATGACAGTACTAAGATTCCAGTCTTATGTCTTGCCTTGAGGTAATTGTCAGCCTC-----------AGGGATCTTCA--------------------AACAGA----------AACTCAGGTTTTAGTTAAGCTTTTGCTAGGCATGCACACAGAAGCAATTATGTGACTCTGTTTCCCAAGTGTATGTCTGTTAGGGATTTCCGTGACTGTGACTAGTTAGGAGAAGATACTAAATAAAGATTAGAGTGAGTAACTACACATTGAGTCAGAACTTGAAGGAAGGTGAGAAATGAGCCAGCAAGCCCAACC----TTGTCATCACACAAAGGTTTTCCTTTGCACAAGTCTGACAG------------------TCAAATGCATTTCAATGAGGATGC----------TGAGGAA----------TAGAATAAGGGAAGGACTTGTTCAGGACGCCACAGAAGCCAGA-----GGAAGAGATCACACAGTAACTCTGGTCT-ACGTTCTCTGTCCACTGCTCTTTA-TTGGTGCTCTAGTGCCTCCAAAGTCCATCCAAGATGAACAACTTTATTGTCCTAG---CTACCAATGTTTGTTGGCAGAGGAAGCTGAGGTCAAAGAGCTGCCTGAAGAGccca

a score=71211
s chr3            92530172 5194 + 160039680 [encoded data, 5911 characters]
s HiC_scaffold_1 138023565 5448 - 233722169 [encoded data, 5911 characters]

a score=5652
s chr3            92532907 208 + 160039680 ACTTCTGCTGGCACTTGGGAGGAGGCTGGCAAACCTGCTTGGTCTGCTGAGGTGGGGGGCAGCACTGCTGTGGGGGAGCACACTGCTGGGGTGGAGGGCAGCATTGCTG------------TGGGGGAGCACACTGCTGGGGTGGGGGGCAGCATTGCTGTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCACTGCTGTGGTGGGGCACACTGCTTCTG
s HiC_scaffold_1 138026283 172 - 233722169 ACTTCTGCTTGGACTT---------CTGACA------------TTGCTGAGGGGGTGGGCACTTCTGCTG---------GCACTTGGGTGGAGGCTGGCAAGGTTGCTTGGTCTGCTGAGTTGGGGGACAGCACTGCTGGGGTGGGGGACAGCA------------------CTGCTGAGGTGGGGGACAGCACTGCTGAGGTGGGGGACAGCACTGCTG

a score=5900
s chr3            92532911 204 + 160039680 CTGCTGGCACTTGGGAGGAGGCTGGCAAACCTGCTTGGTCTGCTGAGGTGGGGGGCAGCACTGCTGTGGGGGAGCACACTGCTGGGGTGGAGGGCAGCATTGCTGTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCATTGCTGTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCACTGCTGTGGTGGGGCACACTGCTTCTG
s HiC_scaffold_1 138026296 180 - 233722169 CTTCTGACATTGCTGAGGGGGTGGGCACTTCTGCTGG---CACTTGGGTGGAGGCTGGCAAGGTTGCTTGGT------CTGCTGAGTTGGGGGACAGCACTGCTGGGGTGGGGGACAGCACTG---------------CTGAGGTGGGGGACAGCACTGCTGAGGTGGGGGACAGCACTGCTGAGGTGGTGGACAGCATTGCTG

a score=5385
s chr3            92532941 174 + 160039680 CTGCTTGGTCTGCTGAGGTGGGGGGCAGCACTGCTGTGGGGGAGCACACTGCTG---------GGGTGGAGGGCAGCATTGCTGTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCATTGCTGTGGGGGAGCACACTGCTGGGGTGGGGGGCAGCACTGCTGTGGTGGGGCACACTGCTTCTG
s HiC_scaffold_1 138026287 147 - 233722169 CTGCTTGGACTTCTGA------------CATTGCTGAGGGGGTGGGCACTTCTGCTGGCACTTGGGTGGAGGCTGGCAAGGTTGCTTGGT------CTGCTGAGTTGGGGGACAGCA------------------CTGCTGGGGTGGGGGACAGCACTGCTGAGGTGGGGGACAGCACTGCTG

a score=26419
s chr3            92544456 2422 + 160039680 ACATCAGTAAAATGTAAGCTCACTTGTTACTTCTTAAAAACTAAAAGGAAATTACCTTAA-TACACACTT-GAAAGATAATTCCACTTTAGATAATAGAAGCTAAGACTTGGTTTTATTCCTAGGAATAAACTAAGGCAATCCTACAAAGTGAACATAGCAATTCAGCAAAGTACAACAGAAAGGA----ATTAAAGTCAGTGTCTTGGGAGCTTTAAGTCTCATTGTACCTGGCTCCTGGTCTCTAATAAGTTCTTT-TATTTTCAATGGTGA----GGCTATGGCTGAAAACAAGGATGACAATGGTAACTTCCTTCCTGCCTTTCTGCCTCCACCTCCCTTTCCATACACACCCTCAACT----ACAATACTCTCTTGTGGGTGTATGAAACCCAGACAAGCAGGTATCTTGTTTGCTCCTAGGTAGGGAGAACAGACACTG--------TGTCTGGAATTCTGACTCATGGCAAACTTCCGTTAGGGTG-GGTCTCTCTCTTCTCTTGTACCACATGCTTTCATATTCACATATATACACACACACTACAAAAAGTATGCCCCACTATTATCCAAGGTGAT-TTTTCTCTCCAATGTTCTATGGTAGATACTAAAATAAAAAAACACAAGT-AGTTGTAATTTAACCA-TTGTTGAAGACCTATTATGTGTCTAAGCATGGGGTTAGGGATTATTGAAAATGGAACTAATGTAAA---ATTTCATATTCAATTTGCTTTCTTTTATCTGGAGAAAATGAAGGTGAATA---AAGAAACTCAACATGCGAATTTCTAGTCCCACTTTTCCCTTTTTTCAAAAGCCTTtttatcattttatttatgtgtatgtatgtgtgtctgtgtgagtgccatatatgcacagatgtccatggattttggaaggagatctactgcagc--tggagtta--caggtggatatacggtgctcaggttctttggaaagagcaacaaatactct----taacaactgagccatatctccagcttcCTATTCTTGCATCTCCAGTGAGAATCTGGTTATCAGCAGAAAAGTTTGACTT-----------TCTGAAACAGGTAACTTTAAGAACTTGCTTATGACTAAACAGATTCGTGATACA----ATAGGGTAGACGGGCTGGGATGACCAAGACTATGCGTACAGATTATT-TCACCTTATAAAGGTCAAGAAGCAGTGAAGCTGGGTGCCTC---GATTATCTATGAGGTTAATAAGAC----------ATTCCTCTTCACAACAGAAGGCATGGGACAAGTAGGCTGATTGTGGCTCAGGCTGGGAAGGAAGCAAGTTGAAGAGAGCTTGAAGCCTGGATAA-GCTGCTACTGGAATTTTCTGGGAATGGAGCATGAAGGGCTGCAGAGAAGTAATGACAAAGAGTAGAATTTCTATGTAGCT----AGGAGGCCAAAGCTAGCTTTAAAAATAAA---------ATGGATATGAAGCT----TAATCCCATAAGGAGAGGACAGGATTTTAATGAG------GCTATCCATCCACATTAAATATGGCATTTTTCTATGTTTTGAGTTTCTTATATACTAAAAAAGGAAATATATGATTTAAATAGAAACTTCAAATGTCAGCTTCATCCCAAATCCTTTCTCACTCCCCAAGAAA----CCTGTCTAATGATAGGCATTGCCATAACTACTATAGTCTTTCCTAGGTCTTTTTGAATCATAAAATGTTCTCAGTTCTTAGGCACACATGTATAAGATTTATTATTCTAATTATCAAGCCCTCAATGACAAAAACACACATCTTTTCCAAAATAGGCACAGATCCAGCCCCCTTTAATAAGAACTCAGTACTTGTTCCAAGAAATGAAGTCATGCAGAGTAAGGGG-----AGAGGCTAGATAAGCACTTACTTT---GTGGGACAGGAATAGAGTTTTAAATATAAAT--ACAACCCATCAGTTGTCTAGGGCTGTCTACCAATAAGCTCTGTTGTGAGTTAT----AATGCAATAAATACTTGCTGAATGCATGCTGTAAATAGAAATCTGTGGGAGAT------------GGTT--ACTGGAAC-AACAGCTTATTTACTCCATTCCAAGAAAGGCATGCAGAAGAacacacaaacacacacacacacaaacacCTCTTT--------------CATAGACACTTAGAGACTTACCTGTATAATTTTTTTTCTGGTTTTGTGCAAGCTACATGTCTGTGTTTCTCTTTGAATAATAATATAAACAGAATTGTACTTTCATGACTCAAGTTTCAGATTTGTCTCTCTGCACTCCTCTTCCCACTGCATGGCAC---------TTGTTTTTGTAGCCAATGGGCCCGTGTTGG-GTATGATCTTACACAACTACAACACCATGTGGTTATATGCAAGGCAAGTTCACTTCAAAACCATTGGAAATCCATAATATGGAAGCA--GAACTCACTCTGATGTGCCTCAAAA--ACTCATTCCG---TTAAGTAGCATCCC--CTGTTTCAGGCATTGAACTATGCACAGAAATTCAGAGATAAATAAAA
s HiC_scaffold_1 138036364 2173 - 233722169 acatttttaaattgtaggaTTACTTCTTCATTCTTAGgaaatcttaaaaaaatacattaaatacgCAATTCAAAATATAGTTTCACTTTGCCTAGAACAGAACCAAACTTGACCT----CCTAGAAGCAAGC--------------------AACAAAGCAGTTTGCCAAACT-TGAGAGAGAGCAGCCCATTAGGTTCCTGGGACCAGGAACCTTAGGTGCTATTATTCCT------TGGTGTTTGGTAACTTCTTTCTATTCTCAGTAGGGACGCTGGCTCTGACTAGAAGCA-----GACAATTACAACTTCCTCCCTGCCTG--------CTCCTCCTTTTCCATGCACACCCTTCATCTGGGAAAATGCTGATATGTGGGTGTTTGGAACCCAGACAAACAGGTATCTTGTTTGCTTCCAGGTAGAGAGATCAGACTTTGAGACTGTATGTCTGGAATTCTGAATCATAGCAAGCTTCCAAGAAGGTGAGATATCTATCTTGTGCTAAGAC-CAATCtttcattctctgtctctttctc---------------tgtctctctctactaTGCAAGGGACTGTTTTGTATCCAATGTCCCTTGCTAGGCACTGAGGT-AAGATCCACAAATAAAATGTAGTCCAGACATTTGTTAAGCATCTACCACATGTCTAAGGAT---------CACCAAGGAAAATAGAAGCATTACAGAAGGATCTCTCTTTAAACT--CCTGTGTTTACCGGTCCAACATGAATTTGaacaaagaagaaactaaac--------ttTTAG----------------------------------------------------GTAAATGTG----------------------------------------GGGAAGGATTCATACAGAAGCAGTGGACTTATTCAGGTGTAC--------CTCAA-------------------AAATATTGTGTTCCAGGAACTGAGCCATGG--------------------------ACTGGGAATTCAG------AGAGAAGACCTAGGCTTTTCCATGTAAGTCAGAAATGTGGAAGCCTAGG---TTTCCAATGAC--AATCAAATCATGGTACACTTTATGAGGGAAA--------------------------TATAGGACACTGTTAGTTCAAAAAGG----AATGCAGTGGTATGAGGCACTTCATTAATGGTCTGGGACTTCATTAAGATCGGTAAATAGCTCTCTCTGCAAAGGAAATGACCTAGTTCAGGTA--------GCTGTTCAgcccaagaaagaagaaagtggaaGAAGACTTCAAAGCTAGATGGTGGTATTATTGGAATTTCCC-------AAACACACAGACCTG---------AGTggcaaaaag-aaaattgatataGTGCCTATAAGGAGGTCAACCCTAAAACAGGGAATAAGTCACTATTCTTGGAAATGAAGTTAGGGCAACTCCAAAAGTAGGAGTTGTAGTCCTAGTGAGAGATCAGCCATC--TCCATTTTAAA-----CAGatcctgatatttttaatttccaataGATAATAAAACTTAACCC----TTGAATTATAAAATTCAGGTGGC-TCTTCTTCACAAATCCTTTTATACT-GATAAGAAATGTGCCCACCTGAAGAGAGGCAT-----TAGTAATTAAAATCTTGGCAGAG------AGAGTCA-AAAATATCCTC------------------TTTAAGGCTGGTC---------------------AGGACAAAA----------------------------------------CTCATAAAATACCAATACATGTTCC-TGAGGAGAAGTCATACAGGGTAATAGATGACCAGTGGCT-GATGGATGTTTTCTGGAAAGTGAAACAGCAAT----CTtaagaaacaaagcaatgaaatgtCAATTTTCTTGGCTTTACTGCTAGAAAACTCAAAAGAGTATGGTACTAaacacagtaaatatttgttgaatgtatAGTCTAAA-AGTAAGTTATGGGAGATTCAACTTGGGCAGGTTTGGTTGTAGCTAACAGCTTCTTTGCATTcgcttgagaaaaaaaaaaagacacacacctACATATACAGTCACACAAAACCCTCTCTGGTCTTCTCTTATACACACACATTTACAGACATAGGTGTATAaagatttttctgcttttgtacATACTgtatatt--tgtttctctttaagtAGGGGTGTAAATAGAATGGTGTCTTCGTGACTCAGGTGCCAGATTTACTTCTCTGGGCTCTTCCTTTTGTTGGGTGACATCTCCAGAAGTTGTTCTCATagcttgtgtgtgtatgtaggtGTGTGATCCTAGATGCCAAGAACACAGCGTGACTATTTACATGGCATGTCCATTTCAGAATGGTGGGGAAAGAATCATATAGAAGCAGGGGAATCATTTAGGTGTACCTCAAAAATACTCACTCAGCATTTAATTGACACCTCGTATGTTCCAAACACTGAGCTAT-----TGGAttcagagaaaaatgtaa

a score=19056
s chr3            92570856 1234 + 160039680 TAAGAAACAGAAAAGAAAAGGCTAAATAAAGTAAGTACAGGATCACAGGGTTTTTAGGATTTATTAGACATTACACCTATTCACA---ATTCTGCCACAACATTAGGAGTGACATCAGAGTTGCTAACTACTGACAGGCCTCCCTTTTTCCCCCACCCCCTGCCTCAGGAAGAAGTTGTGAT-ATTTAAGGTTGGGATTGAGCTTCTTGGGGAAGA-TACCGGACCATATAGCATCCTGTATCC----AGCCTGTCATAGACAAGAGGATGGTCAGGGCCAGATAGATTTATGGGTGAGTAGGCCAGCTGAGGACCTTAAGGAAGTGTGGATGGCTCTCTTCCCTTATGTGGGATGGTTGGAGAGTCTCTGGGACACTGGTGTGGTTGCTTTAGTTTTGGCT--TCACTGCACTTCATGGTTCTGCTGCTGCTTCTCTGTAGTGAGCACGTCTC----CTTTCACTGG---------TTGGACTGGCTTA---GTCAGTGCTTGGTACTAATTGCTCTATCTACTTCTCCTGCTGTGTCCGGTTCTCCAATT---CGTGTTTCTTCCTT---------TCCAGTTGTTTACCC---------------------------TTCTTTA----------------------CTAGTGCTTGATCCAGTG-----GCTGGTCTG-----AGAGCTCCTTC----------------------------TCCTGTTCTAGATGTGA------------GTAATCTAGCTGCTGTTTC-------------------------------------------------------------CTTGAAGCTTT--CTCTTG----------------------------------------CTTAAGTG--------------------------ACTGACCCAGGCTTTT------------TGGTCCTTGAT--------AACC----TTCACGCTCTA---------------------------------------------TCTGTTGCTGCTGCTGCTTTCCTAGGTGTAATTC---------TGGCTCACCAAGTTTCTGCTTCTCTTCCAGAT----------------------------------------------CCTCTG-----------------------CCATAT------CTGGCTCATGTGACTCCT------GCTGCTTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCT---GCTGCTTTCCCAGAGGCAG---TTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctg
s HiC_scaffold_1 138086456 1560 - 233722169 tgagagacagagggaaaaaagcaaaa--------gtacaGAATCTCAGGATTTCCAGgatttattatgtattatgtacACTTACACAGATTTAGCCACAATACTATGA-TGAAGTCAGAGTTACTA--TGGTAACAA----------------------TAGTCTCAGACATAGTCTCTGATCACCTAGGGTTGGGATTGGGCTCCTTTGGGGTGAGTGCTGGATCATA--ACATCCTCTTTCCTAACACCATCAAAGAGACATGCAGAGGGCCAAGGTCAGGTAGATTCACAGGTGAAGGGAACATCCAGGGG----AAAGTTGTGTCAGCAACTCTCTTTCCTTGTGTGGGATGGTCTGAG--------GGATACTAGGGTTggtttcttaattttgggtggtCACTGCATCACCTGCTTCTACTA-TGTTTCTGGGTGGGGACAAAGACTTTGCTCCTTCACTGACTCAGTCTCTTGGACCTGCCCAAGAGTTGAGGCA-GGAAAAGGTTGCTCCAGGTATTTCTCCTGCTGCTCCTGGTGCTTCAGTTGCTCATCTCTCTTTACTCGTTCTTGGTCCATTTGCTGGTCCAAAAGACTCTTCTCTTGTTCCACCTGTTTCTTTAGTTGCTCTTCCCTTTGTACTTTCTCTTGCTTGACCTGCTGCTCCagcttttctgtttccagataCCCTTCGTGATCTCCCGGTTGCTCCTGCTGTGGTTCCTGCTTTGGCTCTGATTTCTGATGATGGTGGTGGTACTGCTGTCTCAAGCACACTTCATtgtcctggggctggggcttcTCTCGTCGTCTCGGGTACAGCTCTGGTTCTTGTAGCTCTTCCTCTTGTCCCTGCTGCAACTCTGGTTCCTGTGGCTTCTCGAATTGTCCTAGGTGCAGCTCTGGTTCCTGTGGATTCTCCTGCTGCTCCAGGTTCTCCTCTGGCTCCTGTGGTTCCTGATGCTGTCCCAACTGCAGCTCGGGCTCTGGTGGTTTCTGTGGCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTGGCTTCTGCTGCTGTCCCAGATGCAGCTCTGGATCCTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCAGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTC------------------------------------TGTGGCTGCTG------TCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCTGCTCAGGCTGCTTTCTCAAATGCAACTCCTCTGGCTC---------------CTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTGTTGTTTATG

a score=6006
s chr3            92571211 519 + 160039680 GTCTCTGGGAC----ACTGGTGTGGTTGCTTTAGTTTTGGCTTCACTGCACTTCATGG-TTCTGCTGCTGCTTCTCTGTAGTGAGCACGTCTCCTTTCACTGGTTGGACTGGCTTAGTCAGTGCT-TGGTACTAATTGCTCTATCTACTTCTCCTGCTGTGTCCGGTT---CTCCAATTCGTGTTTCTTCCTTTCCAGTTGTTTACCCTTCTTTACTAGTGCTTGATCCAGTGGCTGGTCTGAGAGCTCCTTCTCCTGTTCTAGATG------TGAGTAATCTAGCTGCTGTTTCCTT---------GAAGCTTTCTCTTGCTTAAGTGACTGACCCAGGCTTTTTGGTCCTTGATAACCTTCACGCTCTATCTGTTGCTGCTGCTGCTTTCCTAGGTGTAATTCTGGCTCACCAAGTTTCTGCTTCTCTTCCAGATCC-------------------------TCTGC--------------CATATCTGGCTCATGTGACTCCTGCTGCTTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTG
s HiC_scaffold_1 138087442 565 - 233722169 GTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTGGCTTCTGCTGCTG--TCCCAGATGCAGCTCTGGATCCTGTTCCTGTTT---TTTTCCCAGATACAGCTCTGGCCCCTGTGGCTC---CTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCA---GCTCTGGCTCCTGTGGCTCCT------GTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCTGCTCAGGCTGCTTTCTCAAATGCAACTCCTCTGGCTCCTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTG

a score=8832
s chr3            92571215 746 + 160039680 CTGGGACACTGGTG----TGGTTGCTTTAGTTTTGGCTTCA-CTGCACTTCATGGTTCTGCTGCTGCTTCT-CTGTAGTGAGCACGTCTCCT--TTCACTGGTTGGACTGGCTTAGTCAGTGCTTGGTACTAATTGC---TCTATCTACTTCTCCTGCTGTGT--CCGGTT----CTCCAATTCGTGTTTCTTCCTTTCCAGTTGTTTACCCTTCTTTACTAGTGCTTGATCCAGTGGCTGGTCTGAGAGCTCCTTCTCCTGTTCTAGATGTGAGTAATCTAGCTGCTGTTTCCTTGAAGCTTTCTCTTGCTTAAGTGACTGACCCAGGCTTTTTGGTCCTTGATAACCTTCACGCTCTATCTGTTGCTGCTGCTGCTTT------CCTAGGTGTAATTCTGGCTCACCAAGTTTCTGCTTCTCTT-------CCAGATCCTCTGCCATATCTGGCTCATGTGACTCCTG---CTGCTTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTG--------------------------------ACACTCCTGG-TGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGC-----TTCTCTTTCTGA---TCCCCTGCCATATCCGGCTCATGTGACTGC-----TGCT------GCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTG
s HiC_scaffold_1 138087389 768 - 233722169 CTCGGGCTCTGGTGGTTTCTGTGGCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTGGCTT--CTGCTGCT--GTCCCAGATGCAGCTCTGGATCCTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTA---GCTCTGGCTCCTGTGGctcctct------ttctgcttttttcccagaTGCAG---CTCTGGCTCCTGT---------GGCTCCTGTTCCT----------------GTTTTTT--TCCCAGATGCAGCTCTGGCTC---CTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTG-TTCTCTTTTTTGTCCCAGATTT------AGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCTGCTCAGGCTGCTTTCTCAAATGCAACTCCTCTGGCTCCTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTGTTGTTTATGCTCACATTCTTGTTCAGACAGCCCTTTGGCA----AGGGTTGTGTGTTTGTCCTCATGCTTGGGGGACTTTTCCACTGAGA------GCTCAGGTGACACCTTCTGGCATGGGTCAGGCAGTGAAGCTGCTTGCTTTATTTGCTCCTGCTG

a score=12095
s chr3            92571352 608 + 160039680 CTTCTCCTGCTGTGTCCGGTTCTCCAATTCGTGTTTCTTCCTTTCCAGTTGTTTACCCTTCTTTACTA------GTGCTTGATCCAGTGGCTGGTCTGAGAGCTCCTTCTCCTGTTCTAGATG------TGAGTAATCTAGCTGCTGTTTCCTTGAAGCTTTCTCTTGCTTAAGTGACTGACCCAGGCTTTTTGGTCCTTGATAACCTTCACGCTC---TATCTGTTGCTGCTGCTGCTTTCCTAGGTGTAATTCTGGCTCAC------CAAGTTTCTGCTTCTCTTCCAGATCCTCTGCCATATCTGGCTCATGTGACTCCTGCTGCTTT------CCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCT----TCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCT
s HiC_scaffold_1 138087413 605 - 233722169 CTTCTGCTGTTGTTTCAGATGC---AGTTCTTGTTtct---------gaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTG---GCTTCTGCTGCTGTCCCAGATGCAGCTCTGGATCCTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCAGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTTTTCCCAGATGC------AGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTGT---CCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCTGCTCAGGCTGCTTTCT----------CAAATGCAACTCCTCTGGCTCCTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTGTTGTTTATGCT

a score=14182
s chr3            92571353 707 + 160039680 TTCTCCTGCTGTGTCCGGTTCTCCAATTCGTGTTTCTTCCTTTCCAGTTGTTTACCCTTCTTTACTAGTGCTTGATCCAGTGGCTGGTCTGAGAGCTCCTTCTCCTGTTCTAGATGTGAGTAATCT------AGCTGCTGTTTCCTTG-------AAGCT-----TTCTCTTGCTTAAGTGACT---------GACCCAG-----GCT----------------TTTTGGTCCTTGATAACCTTCACGCTCTATCTGTTGCTGCTGCTGC------TTTCCTAGGTGTAATTCTGGCTCACCAAG------TTTCTGCTTCTCTTCCAGATCCTCTGCCATATCTGGCTCATGTGACTCCTGCTGCT------TTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTT---TCCCAGAGGCAGTTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcc
s HiC_scaffold_1 138087327 704 - 233722169 TTCTCCTGCTGCTCCAGGTTCTCC---TCTGGCTCCTGTGGTTCCTGATGCTGTCCCAACTGCA---GCTCGGGCTCTGGTGGTT--TCTGTG-GCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTGGCTTCTGCTGCTGTCCCAGATGCAGCTCTGGATCCTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCC---CTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGC------AGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTG---TGGCTGCTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTG---------------------------------------TCCCAGACACAACTCTGGCTCCTGGGGATTCTGCTCAGGCTGCTTTCTCAAATGCAACTC------------CTCTGGCTCCTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTGTTGTTTATGCTCACATTCTTGTTC

a score=23611
s chr3            92571395 1136 + 160039680 TCCAGTTGTTTACCCTTCT-TTACTAGTGCTTGATCCAGTGGCTGGTCTGAGAGCTCCTTCTCCTGTTCTAGATGTGAGTAATCTAGCTGCTGTTTCCTTGAAGCTTTCTCTTGCTTAAGTGACTGACCCAGGCTTTTTGGT--------CCTTGATAACCT-TCACGCTCTATCTGTTGCTGCTGCTGCT---TTCCTAGGTGTAATTCTGGCTCACCAAGTTTCTGCTTCTCTTCCAGATCCTCTGCCATATCTGGCTCATGTGACTCCTG---------------CTGCTTTCCCAGGTGCA-------GTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCT---GCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTTTCCCAGAGGCAGT---------TCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctggtgcc---tctgtcccaggtgcagctcctgctgctTTTCTCCTGGAATCAGTTTCTGCTCCTCTGGAGTTTTCTGCTGCTGACCCAGATGCAGTTCTGGATCCTGCAGCTTC---TCCTGGTGCTGTCTCAGATGTAGCTCCTGTGGTACTAGCATGTCTtgctgctgctgctgctgcttctgctgccccaggcacagaccctgctcctgtgtctcttgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgtctgaggtgctgttcttgcatttgtggctcttgctgctgttgttgttccaggcacag---gagcccctggggctcttgtggtagctgctgcttctccagatgcagttcct---gttcct---------------gcagctcctg---ctgtgactttttcacctgcagctgctgcttttgtggtcctggctgctgctg
s HiC_scaffold_1 138086922 1088 - 233722169 TCCAGGTATTTCTCCTGCTGCTCCTGGTGCTT----CAGTTGCTCATCT------CTCTTTACTCGTTCT---------TGGTCCATTTGCTGGTCCAAAAGACTCTTCTCTTGTTCCA---------CCTGTTTCTTTAGTTGCTCTTCCCTTTGTACTTTCTCTTGCTTGACCTGCTGCTCCagcttttctgtttccagataCCCTTCGTGATCTCCCGGTTGCTCCTGCTGT----GGTTC-CTGC----TTTGGCTC---TGATTTCTGATGATGGTGGTGGTACTGCTGTCTCAAGCACACTTCATtgtcctggggctgg-ggcttcTCTCGTCGTCTC------GGGTACAGCTCTGGTTCTTGTAGCTCTTC------CTCTTGTCCCTGCTGCAACTCTGGTTCCTGTGGCTTCTCGAATTG------TCCTAGGTGCAGCTCTGGTTCCTGTGGATTCTCCTGCTGCTCCAGGTTCTCC------TCTGGCTCCTGTGGTTCCTGATGCTGTCCCAACTGCAGCTCGGGCTCTGGTGGTTTCTGTGGCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgagg---ctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTGGCTTCTGCTGCTG------TCCCAGATGCAGCTCTGGATC---------CTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGT------------------GGctcctc------tttctgcttttttcccagaTGCAGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGG---------------CTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCTGC-TCAG--GCTGCTTTCTCAAATGCAACTCCTCTGGCTCCTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTGTTG

a score=22383
s chr3            92571395 727 + 160039680 TCCAGTTGTTTACCCTTCTTTACTAGTGCTTGATCCAGTGGCTGGTCTGAGAGCTCCTTCTCCTGTTCTAGATGTGAGTAATCTAGCTGCTGTTTCCTTGAAGCTTTCTCTTGCTTAAGTGACTGACCCAGGCTTTTTGGTCCTTGATAACCTTCACGCTCTATCTGTTGCTGCTGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTAGGTGTAATTCTGGCTCACCAAGTTTCTGCTTCTCTTCCAGATCCTCTGCCATATCTGGCTCATGTGACTCCTGCTGCTTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCT---GCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTG------------------------------------------CTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACT------GCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTT---TCCCAGAGGCAGTTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctggtgc---ctctgtcccaggtgcagctcctgctgct
s HiC_scaffold_1 138086952 931 - 233722169 TTCAGTTGCTCATCTCTCTTTACTCGTTCTTGGTCCATTTGCTGGTCCAAAAGACTCTTCTCTTGTTCCACCTGT---TTCTTTAGTTGCTCTTCCCTTTGTACTTTCTCTTGCTTGACCTGCTGCTCCagcttttctgtttccagataCCCTTCGTGATCTCCCGGTTGCTCCTGCTGTGGTTCCTGCTTTGGCTCTGATTTCTGATGATGGTGGTGGTACTGCTGTCTCAAGCACACTTCATtgtcctggggctggggcttcTCTCGTCGTCTCGGGTACAGCTCTGGTTCTTGTAGCTCTTCCTCTTGTCCCTGCTGCAACTCTGGTTCCTGTGGCTTCTCGAATTGTCCTAGGTGCAGCTCTGGTTCCTGTGGATTCTCCTGCTGCTCCAGGTTCTCC------TCTGGCTCCTGTGGTTCCTGATGCTGTCCCAACTGCAGCTCGGGCTCTGGTGGTTTCTGTGGCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTGGTTCCCGTGGCTTCTGCTGCTGTCCCAGATGCAGCTCTGGATC---------CTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCAGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTG---CTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCT

a score=13283
s chr3            92571559 538 + 160039680 CTGTTGCTGCTGCTGCTTTCCTAGGTGTAATTCTGGCTCACCAAGTTTCTGCTTCTCTTCCAGAT----CCTCTGCCATATCTGGCTCATGTGACTCCTGCTGCTTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttct---gcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctggtgcctc
s HiC_scaffold_1 138087407 484 - 233722169 CTGTGGCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGAT-TCTCTGGTTCCCGTGGCTTCTGCTGCTGTCCCAGATGCAGCTCTGGATC---------CTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCAGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTT---------------------------------------TTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTT---GTCCCAGATTTAGCTC---TGGCTCCTGTGGTTTCTGTGGCTGCTGTCCCAGATGCAGTTC---TGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTC---TGGCTCCTGGGGATTC

a score=24088
s chr3            92571577 1013 + 160039680 TCCTAGGTGTAATTCTGGCTCACCAAGTTTCTGCTTCTCTTCCAGATCCTCTGCCATATCTGGCTCATGTGACTCCTGCTGCTTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGG---TACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCT------------TTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTTT---CCCAGAGGCAGTTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctggtgcctct---gtcccaggtgcagctcctgctgct------------------TTTCTCCTGGAATCAGTTTCTGCTCCTCTGGAGTTTTCTGCTGCTGACCCAGATGCAGTTCTGGATCCTGCAGCTTCTCCTGGTGCTGTCTCAGATGTAGCTCCTGTGGTACTAGCATGTCTtgctgctgctgctgctgcttctgctgccccaggcacagaccctgctcctgtgtctcttgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgtctgaggtgctgttcttgcatttgtggctcttgctgctgttgttgttccaggcacag---gagcccctggggctcttgtggtagctgctgcttctccagatgcagttcctgttcctgcagctcctgctgtgactttttcacctgcagctgctgcttttgtggtcctggctgctgctggtgctCACACTTTTGATCAGGCAGATCCTTCACAGGGTTTGGCCGCTTCTCCTCATGTT
s HiC_scaffold_1 138087221  851 - 233722169 TCTCGGGTACAGCTCTGGTTC------TTGTAGCTCTTCCTCTTGTCCCTGCTGCAACTCTGGTTCCTGTGGCTTCTCGAATTGTCCTAGGTGCAGCTCTGGTTCCTGTGGATTCTCCTGCTGCT------CCAGGTTCTCCTCTGGCTCCTGTGGTTCCTGATGCTG------TCCCAACTGCAGCTCGGGCTCTGGTGGTTTCTGTGGCTTCTGCTGTTGTTTCAGATGCAGTTCTTGTTtctgaggctgctgctgctgtgccaaGTGAAGTTCCTGATTCTCTG---------GTTCCCGTGGCTTCTGCTGCTGTCCCAGATGCAGCTCTGGATC---------CTGTTCCTGTTTTTTTCCCAGATACAGCTCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCAGCTCTGGCTCCTGTGGCTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTTCTCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTC---------------------------------------------------------CTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGG------------------------------------------GATTCTGCTCAGGCTGCTTTCTCAAATGCAACTC------------CTCTGGCTCCTGCTTGTCTTCCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTG---ACTGCAGGGGTACCAGGTGTAGCTCTGGTTC------------------------------------------------------CTGTTGTTTATGCTCACATTCTTGTTCAGACAGCCCTTTGGCAAGGGTTGTGTGTTTGTCCTCATGCT

a score=27868
s chr3            92571635 2914 + 160039680 TCTGGCTCATGTGACTCCTGCTGC------TTTCCCAGGTGCAGTTCTGGTTCAGGTGGCTTCTGATGCTGCTTCTCTTCCAATTGCAGTTCTGGTTCCTGACACTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctggtgcctctgtcccaggtgcagctcctgctgctTTTCTCCTGGAATCAGTTTCTGCTCCTCTGGAGTTTTCTGCTGCTGACCCAGATGCAGTTCTGGATCCTGCAGCTTCTCCTGGTGCTGTCTCAGATGTAGCTCCTGTGGTACTAGCATGTCTtgctgctgctgctgctgcttctgctgccccaggcacagaccctgctcctgtgtctcttgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgctgtctgaggtgctgttcttgcatttgtggctcttgctgctgttgttgttccaggcacaggagcccctggggctcttgtggtagctgctgcttctccagatgcagttcctgttcctgcagctcctgctgtgactttttcacctgcagctgctgcttttgtggtcctggctgc-tgctggtgctCACACTTTTGATCAGGCAGATCCTTCACAGGGTTTGGCCGCTTCTCCTCATGTTTGGGAAAGCCCTTCTCTTGAATCTCAGTGAAGAC---CTGGCATTGTGTAGGATGTGGAGTTGGTTGCTTTGCTTGTTCCTGCTGGATATGATCTGGAGAACACACAGTCTTGAGAGGTCCCTGA---ACCACAGCTGGAACAGTCACTGGCAGTGTGTGTTGATGGGACATCTTGGAAGCTTCTGTAGACCAAACTGAAAAAACAGAAGGGTCAGAGGGTGGACTGAAGATAAGGGAAATAAAGGAACTGCTGAACATACAGAATATACATTATGTTCTGCGTTCTTGACATCCTTACTACTGAATAGGGCATTCTCCCACTTCCTTAGGCTGTAAATCACAGAAGTAGAAAAGAGTTAGG-GTGGAAATGGTGAGTG-CAAAGAAATGCTATCCACTGAGCCCTCTTGTTCACTGG-AGGAGTCATTTTACAAAGAG----------------GTTCTGCAAGAATAGGCTAGCTGTTAATTA-------------ACCTTCTTTTTTTCTG-GTCTT--TCCCTGGGTTCT---------GGAAAGACAGTTTCTGTGA-TATGTCACAATATGAAGGGAAACCTTAGAAAATTAAAGGTCTCACAGAGGACTCCAGAGCTCTGGAAAGCTTAGAGTCTGTGATGAAGGGGAGCTGGG----ATTGCAGGAACCTCAGACTGGAGTCATATAGCACATTGCAGGCACAGCTCCCATCAAAACACTATGGATTTCTGGGCAGCTCACATAGTCCTTCTGGGTTTAAGGTTTTGTTTTGTTTTCTCCAAAAAATTACCAGGTTGCCCTACTCAACCTGAGAGCTCCTTTCTTCTTTGCTCTTCTGAATGTGAACTGTAGTCCCAGGGCCAAAGTTGAAGAGTGAGGGGCAACTGGAGAGTTACTGAGAATTGTAGCTTG------------TTATTCTCAGTACTTAGAGTAC-----------TTCTAATGCAATTTCTTCAC------------------------TCCTGTTTTTCATGGC----------------------------------TTTCT-----------------------------CTATACAGAAAGTT---------------------TCCCTC----------------------TGCACAC-----------------------------------------------------CTACCTG-----------CTTCCTTGAAGGTTAAGTAATCCAGCTGAATCTAGCCCCAGAGCAGTATCTACTCCAACTCTAAGTAGACACTTATGGTCATGTTCTGGCCCGTTGGGAGCCTACAGCCCTAACTAAGAACCCAGTAGCTAACACTCACCAAACTCACA--GGAGGGAGA-----AGGCAGAGGCTTCCAGCAGAGTCCTGAGCTGAGCAGCAACTAGGGC-CCTTTATATTGT---TCTAGCCTACAGTCCTTCTCAGGTTGGGGGTGGTAGACTGGTTTCACCACTCCAGTTGGTCAACTTCCTTCCTTTCTGAGTCATC-TGATAACTTAGACAGCAAACCCCCACACCCCCAGGGCTCCCTTTTCTAGCTGCTGTTGGAACATGTGGGAGTGTGAAGGCTCAACCCCTCCTAACTGAGATCATCTGACCTGAGCACAGGAGAAGAGAAGGGAGTGAGAAAGGTATC---CTACTTTGTAACTTCAACAAAACTTACCTTTCAATCTCAATGGGTTTGGGTTTGGCCTGA------TTTATAAGTTAGTGTA-----TTCATTTCCAAGGGCATAGAGTGAGAAGCTTTGTGCTTTGGGGATAGCCAGGCCAAGATCTATGGTACAATAAGGAGTCA---CATCTGAAGGGACA----TATGGTAGGCATGCTAGTTTGCTATTAGCCCATCTGTACTCAGAATTAACATAACTTGATTTTATAAGGGCATATGTTGTGTCTTGTGAAAGATCAAG--------------AAGATGGAAGCATTAGTCTTAGATTCCTCCAGCTGTATACCAGGAACTGCCCAGCCCCCACATCATACCCATAGTGTATTTATCGAAGTTTCTAAGGATACCATGCTTATAAAGGCT------CCTGGTTCACTTCAGGCAAAGGAAACAGGAAGGAGTAGGAATAGGATATGGTGAATGCATTGCATTTCATGATGATAACCAATACTTTCTATAATTATTTTTGGAAATGTACACTATACAAGCTCAGA---------ACCAAATTGTCCATTGTCACCTCAGAACATTGTTtt
s HiC_scaffold_1 138087561 2565 - 233722169 TCTGGCCCCTGTGGCTCCTGTTCCCCTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGctcctctttctgcttttttcccagaTGCAGCTCTGGCTCCTG---------------------------------------------TGGCTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTG---------------------------------------TCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTGTT-------------------------------------CTCTT-----TTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTG---TCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCT---------------------GCTCAGGCTGCTT---------------------------------------------------------------------------------------TCTCAAATGCAACTCCTCTGGCTCCTGCTTGTCTT---------------------------CCAGGAGCAGCCTTGGTTCCTGGGACTTTTGTGACTG-------------------------------------------------CAGGGGTAC--------CAGGTGTAGCTCTGGTTCCTGTTGT-----------------------------TTATGCTCAC-------------------ATTCTTGTTCAGACAGCCCTT----------------------------------TGGCAAGGGTTGTGTGTTTGTCCTCATGCTT------------------------------------------------GGGGGACTTTTCCACTGAGAGCTCAGGTGACACCTTCTGGCATGGGTCAGGCAGTGAAGCTGCTTGCTTTATTTGCTCCTGCTGGATACTGGCTGGAGGAGAAACAGCCTTGAGGAACTGTTGATTGATAGCAACAGGTACAGTCACTGGCAGTGTGTGTTGCTGGGACATCTTAGTACCTGTTGTGGGTCAGTATG-AATAGTAGGATGGTCAGAGG-----CTGAATACAAATGAAGTAAGTGAACCCCTTAA-------AATCTACAGCAGTGTCTG-GTTTTTCA--------------------------------------------------GCAGAGGCAGCAGAGAGTAAAGCGTAGAAATGGGAAGAGATAGAAAAAGGCCCTCTTGGCAGTCCTTTTGTTCTCAGGCAAGAGCCA----ACAAAGAGATCTCTTCCCATGGCTGCTTTGCAAGGGTGATCT-GATACTATTTAATTTACCACTCTTACCTACTATTTGCCTGTGTCTTTATTCCTGATCTCCAGTCATGAAGGAGGGATAAATTCTAAGATTATGTCATAGCAAGTAGTAAGACC----------AAATGCCTT-------------GAGTCCTAGAAAACCAATAACCTGTGCTAGAAGGGAACGAGAGGTCATGGCATCAAGTTTAGACAGGAGTCACCTGACGTATTCTGGACTAAG-----------------------TCTG------TCATTTAGCCTTTCTAAATCTCAGAtt--------tcttctctgtaaaattaGCTGGTTGGCCTA-TCAACACTAGAGctcctttttttcctcactttctgAACTTCAGCTATATCCCAAGAGCTTGGGGGAGAAAACAAGGGG-AGCTAGCAGGCTGCTGAGAGTTGAAACTTAATGAAATAAGCCTTATACTTCAAAATT-GTATACTCTTGTCCCTGTTCTGCTTAAGCTTATCCACATAAAAACACTCCCCATTCGATAATCCCCCTTTACATAGCACAGTCAAAAATTATAAGCATTTTTTAGAGTCAatttcttccattaaaaaaataaaatgttggttAACCAATGCAAAGAGTTCTAAGAGAATTTAGTTCTGCACCCCTCCCCCTCTGCCTAAATTCTTTCATGCACACACAAATCCAAAAATATGACCCCaagcaaagatgatacatgagaaCACTGCTGTCTTCCTGGCTTTCCATGTATCCCTAGAAGGAAAGGTAATCCAACTTAATCCAGTCCAAAAGCAAAATCCACACCCACCTAAATTGGTCACCCCAGGGCACAATCTGGCCTGTCAGAAGCTTCCGGTCCCAACCCTGGTCCTGCCTGCAGATACTTACCAAACTCACAatagaggcagaggcagaggcaggagcttCTAGTGGTGT-ATGAGGTGAGCATACACCAGTGCACCTTTATACTATTCCTCCTACCTAGCCTCCTGATTGGGTTGGAATTGAGGAACCGGTTCCACCACTCAAGTTGGTCAGC-----CCCTTTATGATTCATTATGGACATTTG------AAGCACTGAGGCCCTCAGGGGCCTTTTCCTTAGCTCTTGCATGGTCA--GAGGATTCTGAGGGCTCAGTTACTTCTG--TGATTCCCTCTGACCAGGGTACAAG---------GGAGGTGAGGAAGACAGCTTATTATTTTGTGACTTCAGCTGGACTT--CTAAGAATATCACTGTATCTACCTGTGCAATGGATACATTCTCTTTATTAGAGTGACAGCTTGACTTTTAAGgttattaaataagaaattaggtATTTTTG-------------AAGAT----------GAGAAGAGTTATTTCTCCTGAAGAGATGGGATTAGGTCAGG------AGCTTG--------TCCTCTCTCCT-------------ATTTATTCTTTGGGAGAAATAAACTCTGTCTTGAGAAAGGTCTGGCTTTAGGCCATCTAGAGATCACAGAAGTCTTCTGCCATGTGCCCTGCTACATGCCAGGGGTTTTACAGTCCC---------CCAACCTTGTGTTTGCAGAAGTTCCCAAAAAAGACATGCTCATAAAAACTCCAAAGCCTGTAGCATTATAGACAAAAAGAACTGAATAGAG--ACAATATTTAATGGTGAGTAcgt----atttat-ataataa--aacattttctatcattattttt------------ttgACAAGCATAGAAACACAATGATCATATCATCCACTGCCTTCtctaaaccatttttt

a score=9181
s chr3            92571733 470 + 160039680 CTCCTGGTGCTGCTGTTTTCCCAGGGACAACTCTGGGTCAGGTGACTCCTGGTACTGCTGCTTTCTCAGGTACAGTTCTGGCTTATGAAGTTTCTGCTTCTCTTTCTGATCCCCTGCCATATCCGGCTCATGTGACTGCTGCTGCTTTCCCAGTTGCAGTTCTGGCTCAGGTGACTCCTGCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGTTCAGGTGACTCCTGCTGCTGCTTTCCCAGAGGCAGTTCTGGCTCAGATGgcttctggtgctgctgttttcccagttgcagttctggttcatgtagcttctgcttctgtttctgtcccaggtgtagctcctgctcctgtggctcctggtgcctctgtcccaggtgcagctcctgctgctTTTCTCCTGGAATCAGTTTCTGCTCCTCTGGAGTTTTCTGCTGCTGACCCAGATGCAGTTCTGGATCCTGCAGCTTCTCCT
s HiC_scaffold_1 138087665 353 - 233722169 CTCCTGTTCCTGTTTTTTTCCCAGATGCAGCTCTGGCTCCTGTGGCTTCTGTTCCCTTTTTTGTCCCAGATTTAGCTCTGGCTCCTGTGGCTCCTG-TTCTCTTTTT-----------------------------------------------------------------------------------TGTCCCAGATTTAGCTCTGGCTCCTGTGGTTTCTGTGGCTGCTGTCCCAGATGCAGTTCTGGCTCCTGTGGCTCCTGTTCCTTTTTCTGTCCCAGACACAACTCTGGCTCCTGGGGATTCTGCTCAGGCTGCTTTCTCAAATGCA------ACTCCTCTGGCTCC---TGCTTGTCTTCCAGGAGCAGC--------CTTGGTTCCTGGGA----------CTTTTGTGA------CTGCAGGGGTACCAGGTGTAGCTCTGGTTCCTGTTGTTTATGCT

a score=20189
s chr3            92574964 1903 + 160039680 TTCTTAAAAATAGATTAGAAAACATTATAGAGTAGGAATTTAAGCATCTACCAACCTTCAAAATGCTCATAGTAGCCTAAGACACATATGATAAAATTCAGATTCACTG-CTATACTCAAAAGGCCCTGGCTCATGTGACTTCTCTCTTTTGTC-----TTGACACAAGTTACCCTTTCTTTGAAATGTATGCTACAATCTCCCTGCAGGTCCTTGGTCCCTAGGGCACATCCAAAGTGCTTTGACTCAGGACTATGTACCTGCTGTCCTTTCTACTAATAGGCTCCTTTCCAGTGC------TCTGACATGTATTCAAGCTTTGACAGGAATGTTGAGATCTGACGAACATACTCCTCTGAATGCCCTAACTATCAGATTGTCTTCAG----Ctttaattaactaataaatttt---agttattctatctatatttatttcatattatttatCTGTCTTCCACTGAAAAACAAGTTATATTTTGAGAGAAATATTCTGGGTGTGCTTTCCATT--GTCTCAAGGACCTATCAAAGTC-ACTCCATACACTAAA-ACACTATCAGTATTAATTAAAAGAATAAATGAC-AGCAAATCTCATACCTACAGACAACAACTTCCTAATATTTTAATGTCAAACAATCTTCATGTGTTTGAAAATGTGTGTGCTAGGAAAATAAAGCTGAATTGTGGCTTATTTTTGTCTTTAGTGCTCAGTTAACAGCTTATTTTATGGAGTTCAT-CATT--AACACTTTTTTATGAGATCATACAAAATAATATAGTAAAATAATGGAAAGATAAAACTCATTTCT--AATTAGTCTTGAGAAGTTTTTCAGTTCCCCATAGTTGTCCTGAGGAGCATATAATCTTTG---TCTTAAGCAGATTTGTTTACAATAAT----TCCCTATGTTCCTGGGATGTATTCTTTAAAGAGATAGAGGACTGACATGACCCTCTGTCCTCTAAAACAAGTTTGCCAGGATTTCTCCATTCCCAGAGCCATGAGGCATCCTGAACACTACTCTGAACTATAtttctttcttcctttctttcttccttccttccttccttccttccttccttccttccttccttccttccttccttcctttcttccttccttcttttctttttctttctttctttctttctttctttctttctttctttctttttctctttttctttcctttttttgcttttatttattttttttctttttctattagatattttcttcatttacatttcaaatgttatccccaagccccctataccctcccccagtcctgatccccaacccacccacacccacttcctggccctggcaCTACTTT--CTATACCAAAGAAAGCATTCCCCACCCCACCAGAAGAAGTAAGCAAGCATTCTCACATGAGCA-------CTTATGCTCCACTTCTGACTTCACATGGGAAGAATCTGACTCTCC------TCAACCTGTGAC----AGTGCCAGGGCAGCAGAC--TGGTCAAA-AAGTCACACTGGTCTTATGGGTTCCCAGAGGCTCAGTATCTGCTCAATCTGTTTCCCACCAGCTGATTCAGAGTATGATAAGAATTCAGAAATGATACTGTGTGTGCGTGAGTGTTTGAGCACTGGGAAAAGCTA-AGGTGTGGGAATGAGGGCATAGGATAGAGCCCAGAAACCTGTGTGTAGTTGAAGGAGGGGTTGAAGAAGCTCCAGACTTCTAATGCTCAAAGGTCACATATTTTGCCCTAGGATTATCCCACTTAGCGACTGGGAATGCATGTCAATTTGGCATTTTTTTTTCAGTGTGCTGTGTGACTGACTTTATAAGTCTCAGATCCTTGTGATGAATCCAAGAAACTATGCAATGCAAATTATACAAATTCTCCAGTGTAATGAAGGTAACCTT---TCCCATAACCCATGAAGAGGCCTTGACCCAGCTCGGCCTCAGTG
s HiC_scaffold_1 138090122 1506 - 233722169 ttttaaaaattagcttaaGAAATCT----GAGTAGAAATTTGAGGAC-----------------------AATAGTGAAAGA--------ATAAAGTCTAAATTCACTGGCAGGGCCTAAAAGACCTCAGGATGCTTGATTCCTCCTTTTTGCCAAGTACCAATGCATGCCAATCTTTCCTTGGTAGGTTCTCTCCTACCTTTCTGAGCATTTTTAGTTCCTAGGACAGATGTC---TACTTCCCTCTAGGGCTGGGCACCTGTT-TGCTTTCTGTAAGTATGATCCTCCCGAAGGCCCACATTCTGATGGGCTTTTGAGCT-------AAATGTAGGGATTAGCTAAACGC-CTTCTCAGACTACCTTAGTTGAAGGATTCCTTCTggtttactttatttatttaacagaACTCTAGagttattttatatgtattcattC--TCTTGTTTATTCAT---------------AAG---------GGCAGGGGTATCCCTGATATGTTTTCTACTATGTTCCTAAAATCTGTCAAAATCTATTCTATGCATCAAGGACTCAATCCATAGTGCATGAAGGAACGAATGACCGGTGAATCTCAT---TGCATAAAGGTAATTACTAACATTT-AATGCTAAA--------ATGTATTTG------TGTGTA-----AAACTAAAACTGAATTGTGACTTGTCTTTCTTTTGAATGCTTGTTTAGCAGCTTATTTTATGGACATCATACATTTAAGTTCTTTTCTTTGCAACCTGATCAAAAAATATATTAGAGTGATGTGACAAGAATACTTATTTTTGGAGCTAATTTTGATAAGTAACCTAATTTCTCACAGTTATCCTGACAGGCACC--ACCTCCAAAATTCCAAGTTGATCTATTTACAGTATTAATTTTGCCATGTTTTTAGGGTTCAGG--TTGGAAAAGCAGATGGCGGA------------------------GGTCTCACAAAGATTGACTAGTCTCTGGG--------------------------AAGCTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTTCCTCGTACTCTATT------------------------------------------------------------TCTTGAACCCCACTCAA----------------AGGTCTTACATTGCCTTGACTGGGGTAGAGAAAATGCTTTCTATAGCTTCATAAGACCTA--------TTATCATGTGGACGTAGATTCCCTGTGCTCTGCAGCTGAGCTCACATGGGAGGAAtctgcctctccctctcctcaGCCTGTGACCATCAGTGCCAGAGCAGCAGACCTTGCTCAAGGAAATCACATGAGTCTTGTGGCTTTCTAGAAGCTGCGTATCTGCTTTATCTTCCTTCCACCCTCTGATTCACAGCATAATGAGAGCTTTGAGAAGATG----GTGTGTGTGAGCATTTGATCAACAAGCAAAtccaggggtgtgtgtgtgtgtgtgtg------------------tgtgtgtgtgtgtgtgtgtgtgtgaaga---tcCAGCCGTTTATGGCTTACAGGGCCCATATTATGCCCTTAGGTTGCCCTATTTAGGAACTGGGAATGCATAATAG--GGGAAAGATTGTTTC--TGTACTTTATGAATGACATCATAGGCCACAAA--------AGGCGTCCAAATAACTGTCCAGCTT------------TTATCCAGCATAATGAAAGTGAGCTCATATCCCATGACACATGGTGAAGACTTGACCCAAATCTGCCCCAATG

a score=44070
s chr3            92583767 6045 + 160039680 [encoded data, 6938 characters]
s HiC_scaffold_1 138101740 6166 - 233722169 [encoded data, 6938 characters]

a score=4687
s chr3            92584224 132 + 160039680 TCTGAAGAGCAGCAGGTAGGTT---GAGCGCAGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTGGTTTCAGCGGACAA---GGACAGGTGGCTGGACAG
s HiC_scaffold_1 138102265 138 - 233722169 TTTGGTGGACAGCAAGCAGGCTTCTGTGGGCAGCATGGAGGTTTCTTTGGGCAGCATGGAGATTTCTGTGGGCAGCACACAGGCTTCTGTGGGCAGCACACGGGCTTCTGTGGGCAGCATGGAGGGGTCTGTGGGCAG

a score=4434
s chr3            92584225 261 + 160039680 CTGAAGAGCAGCAGGTAGGTTGAGCGCAGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTGGTTTCAGCGGACAAGGACAGGTGGCTGGACAGGGACAGGGACAGGGGGGAGGACAGGGACAGGGCTTTGGAGGGCAACATGGGGACTTGGGTGGGCAGCATGGGGATTT---GGGACAGCAAGGTGGTTTCTGTGGACAGC---ACGGTTTAGGTGGGCAACA-TGGTT
s HiC_scaffold_1 138102236 196 - 233722169 CTTGAGTGCAGCATGGTGG------GCAGCATGGTTTTGG---TGGACAGCAAGCAGGCTTCTGTGGGCAGCATGGAGGTTTCTTTGGGCAGCATGGAGATTTCTGT---------------------------------------------------------------GGGCAGCACACAGGCTTCTGTGGGCAGCACACGGGCTTCTGTGGGCAGCATGGAGGGGTCTGTGGGCAGCTTGATGGTTTTGATGGGCAGCACTGGTT

a score=5019
s chr3            92584226 244 + 160039680 TGAAGAGCAGCAGGTAGGTTGAGCGCAGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTGGTTTCAGCGGACAAGGACAGGTGGCTGGACAGGGACAGGGACAGGGGGGAGGACAGGGACAGGGCTTTGGAGGGCAACATGGGGACTTGGGTGGGCAGCATG--GGGATTTG-GGACAGCAAGGTGGTTTCTGTGGACAGCACGGTTTA
s HiC_scaffold_1 138102249 184 - 233722169 TGGTGGGCAGCATGGTTTTGGTGGACAGCAAGCAGGCTTCTGTGGGCAGCATGGAGGTTTCTTTGGGCAGCATGGAGATTTCTGTGGGCAGCAC--------------ACA-------------------------------------------------GGCTTCTGTGGGCAGCACACGGGCTTCTGTGGGCAGCATGGAGGGGTCTGTGGGCAGCTTGATGGTTTTGATGGGCAGCACTGGTTA

a score=4223
s chr3            92584230 107 + 160039680 GAGCAGCAGGTAGGTT---GAGCGCAGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTGGTTTCAGCGGACA
s HiC_scaffold_1 138102313 110 - 233722169 GGGCAGCATGGAGATTTCTGTGGGCAGCACACAGGCTTCTGTGGGCAGCACACGGGCTTCTGTGGGCAGCATGGAGGGGTCTGTGGGCAGCTTGATGGTTTTGATGGGCA

a score=4472
s chr3            92584230 107 + 160039680 GAGCAGCAGGTAGGTTGA---GCGCAGCAAGGAGGTGGCTGTGGGCAGCAGGTGCACTTTTTGGGGCAGCACGAACACTTCTGTGGGCAGCATGGTGGTTTCAGCGGACA
s HiC_scaffold_1 138102292 110 - 233722169 GGGCAGCATGGAGGTTTCTTTGGGCAGCATGGAGATTTCTGTGGGCAGCACACAGGCTTCTGTGGGCAGCACACGGGCTTCTGTGGGCAGCATGGAGGGGTCTGTGGGCA

a score=41772
s chr3            92604232 2074 + 160039680 ACTGGACACTGTACAGATCTTCACTGACTCTGGTCTCTGTGTGGAGATATGCAGTGGTCACTCAGTTACATGGTTAT--GTTCAGA---ATTTCTTTTCATGATTTTTTAACTAAGGTCTAAGAACTATAAATGTCCCTGTGCCATCTCCTTCTTGGGCATCATACAGTCTCACCC-------AGGGTCTGAGCACCAGAATGT--CCACTGTACATAAGGACAGCTcagtagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcaTAAGCATTAGTAATATTGGGCCATTTGTGTTCTGAAAACATCTTCCCACACCTTTCCTGAGGATCTTTCCTACAAAAAGCCCTCCAAAGAGCTCAGGCTCTGGTTCTCTCAGGAAGGAAATTTCTGGCTTGGCAGGGTCATTGTGGTATCTGGCT--AAGGAATCAAGGCAGATCAATTCAGGCTCCACTGGGAAAATCAATAAACACCAGCAAGCTAATGGTACCATAAGAGAGAAGCTTTATTTCTGTTCTGTGTGCTTATAAGGCTTC-AGGAAACAG-----TTGTCTTTCACCTTCAGTTCTTCTTTGCCTTGTACAAGGTCCAATGCTCGGAGGCCTCAGTTCCTTAACAAGTAAAGGAGCCCATTATCCATGCAACTATTTCAGGACA----GGGAGGAAGACT-GAGTGAAGAAGAGCATCATTTCAAAGCTTATCCTGGGCCATGTTCTTTGTTTTCTCGAGGGATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGCTGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCCAAACCAGAAATATAGCAGGTAGAAACACAGCAAGCAGGAGCTGGTGGGGCACTGAGAGGGAGACATGAAGTAGGAACCTGGGGACCTTGTTGGGGG------------CACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTGGGCAAACTTAAAATATCCTGAAGGGGGAAACATA---CAGACATTTTGAGATCCTGGTGAATACAAA--TTATTTTGCATTGATATTTTCTATGAAGCCTGAAGCTCTGTAACAAAATCTGTGAGTCTAGAAACTATGTCATTATAACAGAGAAGCTCTGGTTTCCTGATATGAAAGAAGACCAGCAGTGGGTAAGTCAAAATTAGGTAA-GCCTGCTCACAGTCCTAAGAC-TCTTACTTCAAGTGCTTGAAGTACTGCTGGTCTTCCAAACCTTATTTTAGCTTTTCTCCTATGCTCTACTTTGGACATTTACCATACTTTGAGGCCAAGTGGATCATTACATCACCTTCCTCCTCAGTCTCCCTTTGCTTTGGTTTGC----TGTGTTGTGGGTTCTGGCTAATTTCTATTCTTCAGTACAGTATGGCTACTGTTGTCCTCCAA-----TAGTTTCCTTATCTCCGTGCTTTCCCATCACCCCAATCTCTAGAAAACATTTGCCCTTTCTGGGATGGTATTTTTGATTTGTCTTCATAATTTTGA----------GTGCCTAAAATTACCCATTGGCTGTTGCTCAT--TCTCCATTCTGGACTGGCTTGTATCATTTAGCTTGGCCATAGACAACCCATTTATCCCTCAAATAGCCATTAGATCAGTAAGAGGACTCACCTTAGTCTCTTAATATCAGGCAAGCAATGGAACTGAGGAAACCCTACGAGTAGAAGTCTTTTATACATCTACTGCTCCAAACTCAG---AATGAGGCATGGATGATGTGAAAGCTGTCTGCTGATCAGGTGGCTATGATGACAACAACCCACATGCTAGTGGCTCTGTCATTTTGTCACTGTGTCACTCTGGGTCACTACCAGCTCCTTATGAGTGTCTTCCCAGGCCATCTCTTCTCTCCAAAAGCCTTGTTACTATTTCCATAAAGGGGAGTAAATCGTAGTTTACAAGGATGTTTATAAGAAAAAAGCTTGGGCACTAGATGGAAGTTATACTTTCTGCAAGAACCCAAAGCAGATGGGCAGCAAATTGAAATCCACAGATGCTAGGCCAGCTCAGG
s HiC_scaffold_1 138111705 1931 - 233722169 ACTGCCTGCTACATAGAGTCTTGTTGGTTCTGATTCTTATATGAAGGAATGGAGG----ACAAAGTCATGTGAATATTGGCTCAAGGAGAGTGATTTTTGTGGCTTTTAAGCTAACATATGAAAACTCCAAATACCCCTCTGCCTTCTC----TTGAGCATGA----GTTTGACCCTATAAGAAGGATCTAGGGAGCAGAATGTACTCACTG---AGAAGGA-AGTTCGGTGGCTTCA--------------------------------------------------------------------CTTTGGAAGCATCACTCTATCTTGCCCCTCTACATCTGTTCTCCTAACAGCCTTCTGAACTGCTCAGACTCTGCGTCCGTCTAGGTGGAAATTTCTCATCTGGCTGTATCACTATGgaagtttgctttaaaaatccaacttaaaattatt-----tcctctgGAAGAGCCAACAAACACCAA-AAGTACAAGGTTCCAAGAAAGATTAGTTTTATTTCTGTAC-----ACTGACAAGTCTTTTAGGAgacagattttttctttcttgcactCAGGTCTCCATGGCCTAGGACCA---CCATGACCAAGAATCATGTAGTTCTCAGCAAG---AAGAGTCTATATCCTGAAAAGCCAGGTCAGGGCGAGAGGGAAAGAAGGCGAGAGCAAAGAAAAGCATCAATTCAATACTAGCCCTTAGCTATGATTCTTTGTGTCCCAAAAGTTGCAGGTCAGTTACAGCCTCCGGAGTTGTGGCAGCAGCCAGGACATCCAGAGGACAGGTTTTCACAGCAGTTTGAACACTGGGGCTGGTGCAGATAGAATCGTGGAAACCGGTAAGAT-----------------------ACCAGAGATACA-CGGGTGGAAACACAGAAGGAGGAGGCTGGAGGGGAGCCAGAAGGGGGACATGAAGAAGGAGCTTGTGGGCACTGAGGGTGGCAATCAAGTAGACATTTTGGGGGGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCTTGGAGAATGTTCAAAGAGCCT-------AGAACATAATGCAAGTAGTTTGAAAATCCTGTGAATAAAAAGTTTAGTTAGTAACTAT-TTTTCTACTAAGGCTGAAATTCAGCAGTTAAATCTGTG-GTCCAGAGGGTGCATCATGATAGCAGGACAATCGTACTTTCCTG-CATGGGAGAAATCTAGAGTTGGGTAAGTGAGAATCTGGTAACATCTTCTTCCA--CCTGATCTGTTTCTCCTCAAG-ACTCAAAGCA--ACAGGATATGAAACAGTTTTTTTA-----TATCCTGTAAT-TATT-----CACTCAGCACATTTTTAGCC----TGGGTCATTGTTACACCATCttccttaacttctttttttttttttttttttcatgtacccTGTGCTCTGCTTTAGTCCTATTCTTCAGC---------TTTCTCTTATCCCACAAATGAGTTGCTTTCCCATCTCCCTGACTCCGCACTGCCCCAGTCTCCAATTAATATTCACTCCTTCTAGGATGACATTTTTGAATTATCCTGGTGATTTCCACGAACCCCACCTTACTGGAATTGCCAATT--------TTCATCCTCTCCATCCTGAAATGGCTTGCAGCATTCATATACAGTGTGGTCACCTTAGCCATCTCG-AGACTGCCATTAGGTCAATAGGGGCACTTACCTTGTCTTTCTAACCTTGGGCAGGTGATGGAACTGAAGAGACCCTGTCAACAAAATCCTTTTATACTTAAACTGCACCAAGCTTGAGGCAATGAGCCACAGATGATGTGAAAGCTGTTTGCTAATCTGGTGACTGTGATGACAACTTCCCACATTCCAATGGCTCAGC-------------TGTCACTTTGTG-----ATCATATCCCCACAA--GCCTTCCTAGAGCATCCCTTCCCTCAATAAATCCAGGTA------CCATAAAGATAAG---ATTG----TTATAAGAGCA-TTACAGTGGCATAATTTAGGGATT------GAATTAGAGTTCCTGAAGGATTTAAGCATGACTTGTCAGCCAATCTAATACCACAAATTCTGAGTCAAACAAGG

a score=6856
s chr3            92604908 346 + 160039680 ATCATTTCAA-AGCTTATCCTGGGCCATGTTCTTTGTTTTCTCGAGGGATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGC---TGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGC--TTCCCAAA-CCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGG--------------GGCACTGAGAGGGAGACATGAAGTAGGAACCTGG-GGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTG
s HiC_scaffold_1 138408285 351 - 233722169 ATCCCTTCAAGAGCTCTTCCTGGGCCA--------------------------GCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=7970
s chr3            92604909 345 + 160039680 TCATTTCAA-AGCTTATCCTGGGCCATGTTCTTTGTTTTCTCGAGGGATGCAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGC---TGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCC---AAACCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGG--------------GGCACTGAGAGGGAGACATGAAGTAGGAACCTGG-GGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTG
s HiC_scaffold_1 138368891 350 - 233722169 TCATTTCAAGAGCTCTTCCTGGGCCA--------------------------GCTTAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=6622
s chr3            92604958 298 + 160039680 CAGTTTAGCTACAGTTTCCAGGGTTGTGGCAACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGCTGGCGGAGGTAGA-ACCGAGG--AAATCGGTGAGATATTAAAGAGCAGCTGCTTCCCAAACCAGAAATATAGCAGG---------------------------------------TAGAAACACAGCAAGCAGGAGCTGGTGG--GGCACTGAGAGGGAGACATGAAGTAGGAACCT----GGGGACCTTG---------TTGGGG-GCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTGGG
s HiC_scaffold_1 138333231 352 - 233722169 CAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCC---CCAGAACTGCAGCAGCCCCCACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGAC-TGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGGG

a score=5147
s chr3            92604962 293 + 160039680 TTAGCTACAGTTTCCAGGGTTGTGGC---------------AACAGCTCGAACATTCTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGCTGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAAGAGCAGCTGCTTCCCAAACCAGAAATATAGCAGGTA---------------------------GAAACACAGCA--------------------AGCAGGAGCTGGTGGGGCACTGAGAGGGAGACATGAAGTAGGAACCTGGGGACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTGG
s HiC_scaffold_1 138180360 341 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGC---AGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCC---CCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGGCCTTAGGGGGACACTTTGGGGGGCATTTTGGGG--------TGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=5781
s chr3            92605003 283 + 160039680 CTGCAGCCTCTTTCTCAGGACACTCAGAACTCTGAGGCTGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATTAAA------GAGCAGCTGCTTCCCAAACCAGAAATATAGCAGG---------TAGAAACACAGCAAGCAGGAGCTGGTGGGGCACTGAGAGGGAGACATGAAG-TAGGAACCTGGGGACCTTGTTGGGGG--------------CACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTGGGCAAACTTAAAATATCCTGAAGGGGGAAACA
s HiC_scaffold_1 138300268 290 - 233722169 CCACTGCCACTATTGCAG--CAGCCAGAGCTCTGGTGTCTGTGA---------CGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGG------------AGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGCAAGAGTTAAGAGATCctagatgaaaaaata

a score=5248
s chr3            92605023 230 + 160039680 CACTCAGAACTCTGAGGCTGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATT------------------------------AAAGAGCAGCTGCTTCCCAAACCAGAAATATAGCAGGTA--GAAAC-------ACAGCAAGCAGGAGCTGGTGGGGCACTGAGAGGGAGACATGAAGTAGGAACCTGGGG------ACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTT
s HiC_scaffold_1 138258271 269 - 233722169 CAGCCAGAGCTCTGG---TGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGG-GGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGG--GAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTTT

a score=5627
s chr3            92605023 232 + 160039680 CACTCAGAACTCTGAGGCTGGCGGAGGTAGAACCGAGGAAATCGGTGAGATATT------------------------------AAAGAGCAGCTGCTTCCCAAACCAGAAATATAGCAGGTA--GAAAC-------ACAGCAAGCAGGAGCTGGTGGGGCACTGAGAGGGAGACATGAAGTAGGAACCTGGGG------ACCTTGTTGGGGGCACTTGGGTGGACAGTTAGCAGAGAGCTTGCACTTCTGTTGGTGTTGCTGGGAGGACATCTTGG
s HiC_scaffold_1 138197648 271 - 233722169 CAGCCAGAGCTCTGG---TGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGG-GGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGG--GAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=26476
s chr3            92608419 1878 + 160039680 AAGTTTCTTATTGTCAATCATCTCATACCAATAAAAAATATCTAAATTTAACCCACTCTCTTCTTGCTCAAAAAACACAAGTATAATTCAAATCCTGGTGCTCTAATTCCAAGAGCTATGTTCCTCTAGTTTCTATAGTATGTGAAGTTGTGATGCTGATTCAGCACAGGCATAGACAGATATGCATTACAGACATCAGCATAGGGGAGGAGAGGGTGTGCCCAAAGGCAGAAA---CTA----CTGGTGGT----TTTTCCACAAGAGATGATCTTATTAAATGGCATGGGGTTCAC-TGTGGGTGAGGGAGAAGCTGGTATTCTGGATTGAGATGAGAAGAACACAGGCATAG---CAAAAGATGGGTATAAGCTTAGTCTGTCCAGGAAAAAGGGATCATAACAATATTGGGAGTAAAAGAAGA-----AAACATGACACCATGGTTGTTCAGATAGAAGGCAGAGCTTTATGAGCTGTGTTGTGTAGTTTTACCCTGAAGAT----TCCTGGCTTCTGCCATGTATTTCCTGGAACTCTGCTGTGAAAGTTGTTTAACCATCAGGTCTTCTGATGGTTACTCCCCcacacacacac----------------acacacaca---------catacTTCTGCAATTGTTTGTTGCCTCAGCTTCATGGCTTTATGTGGAAAAGAAGCTGGGAAACCATACACCTTAGTGTCATAACATTGGTATTCAAACCCCTCATATGTCATTTCACATATTTTGAGCATGAAAAGGGCTAgggctagagagatggctcagtatttaagaacactggctactcattcagaggccctgagttcaattcccagaaaccatatggtggctaatgatccatctacaacaggatctgaagccttcttctgccatgcaggtatatatgcagagagagcacacacatatttaaaaa---------aaataatctgtaa----CATGAGGTTAA-AACTTGAAATCTTAAGAGCTGTTGTACTGTGATAATATGAGTTAATTTGATAAAGTCTCAGAAGTATGAGTTCTATTCTAAAATGCCATTAATTCTTAATCTTTATTTATGTTGTCTGGCAGGAAAAC-----CACAGAAGGACAAAATATAGGCCTTGTACCCACCCCCTGCTTTACTCAGAGCAATTAATGATAACTTTACCTGATTT----ACA------------------CATGCTA--CTTAATAATGCTTCTTAA---AAACAAGACTAGAGTTAACGGGCCATCTCTCAC-------TATCCAAGCA----------AGGTGAGAAGGACCATGACCAGATTTT------CATTTTAGAATGATTACCAGAGT----------------CTCCATTTCACTGCTTAA--AGCTGGACTGTGTAGCAAACAGGCAGTTTGCAGGTTTAAACCAGAGAT--------AGGTTTGGGAAGAGTTCTTTACTAATGAGCTTTTATGGAAAGGGGATAGGCGTAGAATTTAAGGAGAGTCTCTGCTTGGTCAAAGTCTCTCTGGCCATGGCTGGTACATTCTCCAACTCCACTCTTCATCTGCCTGTACACTTCCTTACTACCTTGCCTGCCTAAGGACTCAGGAATGTTATAGATTCCTATCTGGTTTGGGTGTTTCCTTTAATAGAAGGGTGAGGTACAAGCTAGGCTAGCATCTGCATGCATGAGATTCTTATCAAGCTAATCCCTAAGTGATGAAAGAGCAGAAACAATGATCGTTCTTTAGCCTGAGTGGTGGGTCAGCCTTTGAAATTTCTAGCCTCCCACAAGCTAGAAGAACAGGAAGCACATTTG-----------AAGTTCAG---------------------------------------------------------TGTGTGTCTCTTTGGCACAAG--ATAGCCATAATCTGTAACCAATGTCCAGGACTCATGGGTCTCA-----CAGGGAGAAGAA-GGGACAAGATTTATTCAGCATAATAATTTCCCATCACTTTTATGAAAAGGACTTAAAATCCAGTCACATTACTCTACCTGTATAACATAGCTTAAAGAT
s HiC_scaffold_1 138117992 1877 - 233722169 AAGCTTCTCCTTGTGAATCACAT-ATATAAATGCAAAGTTTCTGAAGGTCAAAAAC----------ATCAAAACACATATTTATGAGTCAAATTCCAGTGCTCTAATTCCAAGacatattttcc---atcttttattcTATGTAAGGAAATGAGGCTGATTAAA-----ACATAAA-------GAACTTGAAACAGCAT--TAAGGGAGGGCTGGGAGTGCCCAGAAATAATGATATCTAAGGTCTGGTGGagtcatttctggaaaaaaatgttctttggaAAGTGAGTGAAAGTAAGGCACAGGTGAGGGAAAGTCCAGCATTCTAGGTAGAGA---GAAGAACACACATATCGGcacaaagaatgtgaatgaactTGGTATATTCTGGAAGCAG-----------ATAGTGGCCATAATATGAGATGCATAAATACAACAGCCTgga----cagaaaggaagaagggc---ACCAAATGTAATGTTTTGCTT---ACTGGTGATGTGATACTAGCCTATA----gaattatttggaattttatcAACAAGAATATCCA-CGATTACCTCTTTCAAGAACCACACCTCCGGCCAAGCAAGAGTTGCTGTCTTAGGATACTCCCAGCTTTCCCTCATGCTT-TACTATTGCCCAGTGGTTTGGCTTCACACCTTTCCATGgtaaagaaaatggaaggatatgaGTCTTGAAATCAGAGCATTGATATTTGAG----TCATATGTAAGTT---Atgtttt------------------------------------------------------tgctgattt------------ttaaatt------aacc--------------------tGTAAAATA--------------------------AGGTTAATGTGAAGAAA---CACACAGGTATTGAACTATAATATTGCAAATAATATTTGAGAGACAGTAGGTTgagaatttgaatttcttcacATCATTCCACTT-----ATATGAG------------GACTCCAGAAATGTACGTTTTACT-TCAAATACCATTACTATTTAAACCTTGGCTATTTTGACTGCCTGGAAAAAGGCAGCTCAGAATATGACAATCTGGGCCTTGTACCTACTCCATGCTGCAATTAGAGTAATTA----TATCTTTACcagcttttgagacagggtctcaccatgcagttcaggctggccttgagctcactttgtagcccaggctggtctcgaattcgcaatgatcctcccacctcagcttccctgagtgctgggattacaggcatgagccaccacgcccggctctttgtttacattttagaatGATTACTAGATCAGATGGCCTTAGATAGCTTGATTTGGATACTTAAGAAGCTGAAGTCTATGGTGAATGGCCAGGCTGCAGGTTTGATACGAGGATCAACAACTGGACTTGAAGTGAGCTATCTATTGATGAGTGTATAGGGAAAAGGGTTGGTTGGAAGATGATCAGAGAGTCTTTGTTTGGCACAGCACTGTCTGGGAACAGCTGGTGCATTCCTAGACTTTGCT-TTCATCCACCTATTCATTTCCTCACCACTCTGCCTGTGTGAGGGTTCAAGAATGCTATAGACTCCTGCCTCACTTGGGTGTGCCCTT-AATACAGAGGTGAGGTACCAGTCAGGTCAGGATTGGCATGCATGAGATTGTTACCAAGCTAATCCCTATGTtaggaaagaacaaaaacaaggatCCTCCTTTTGCCTGAGT----ACTTAGCCTTTAAA----CAGTTCTCCTACAGGCTGAAAGACCAGGAAGCATGTTTGTCACTAGCAAAAAACACAGGAGATAACTCATGGGCAATGAAAATTTTACCAGGGTGACTGAGGGACCAAGGCTGCTTGTGTTTCTTCCCAGCACAGGGAACAATCGTGACCTACGTGC-ATGTTCTAGTTTCATGAGCCTCAATTAGTGGGTAGAAGAATAAGATAAGTCTTATTCAATAAAACA--CTCACATATCTTTTAGTAAGTAGTCTAAAAAGCCAGTCAATCCAGACTGTCTGCATAGCGTGGGTTAGAGAT

a score=46476
s chr3            92618744 4277 + 160039680 [encoded data, 4759 characters]
s HiC_scaffold_1 138126975 4205 - 233722169 [encoded data, 4759 characters]

a score=41195
s chr3            92641426 1897 + 160039680 AAGTAGTAAAACA-----TTCTGTAAGTACCTTTTTGTTAGATCCATTTGAAATATTTTTTGA--AGAGGAATAGCCAAACCTCTTCTGAGTTGACCACATTGTGTTTGTGCCCTGGTTTCCAGAAG-----GAAATTCAGAGTGCTAAGGCATTGTGGTCCAATTGGTCGAAAGGAACCACTATCC----------CATTTTGTTTGGCTTTTCTGTGTACATAGTGTATGTAAAGGACAAAGGGGTTCTAATTTACAACATCTAGTCACTGTAGATGTTAAAGAGGTTGCCAATGTATGACAAAG-TAGAGTTAGTAGAACAATACATTATTTTTTTACATTTTGTGTTAAAGTT------------------------------------------------TTAATT----------------------------------------------------ACTCTTGTTACATGTGTGCCATTTACT---GACTGCT--GTGTACATAGTG-ACAAC---AGTCCTTATTTGAAACATCTGGTC-TGTCTAGGCATTTAGAAGTGCCCAACGTATGTTAAATGTAGAGGTAGTGAAATATCACTTTGCAAGTATCTTTTTTGCAAAAACTCA--TGAACTGTTGTCTTCTGGGAGTGGAGTGATGAGCCC--CTCTGACCA----GTACTGTCTTTACTTGTTCAGTGGTTTGGAGGAGGTGCTGGGAGG-CAGTGACAATGGgtg-tgtagtagtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgACCCTTTCAGATGCCATTTTT--ATATACTT---GCATTTTGTTTTGCTGTGTGTATACTG--TGTATAATGGACAAATATATCTAAATTTT-CAACATCTAGAC------------------------------------TCTAGATGTTAAAGAGGTTGCCAATGTAAAACAAAGTAGTAAATTTAGCACATAGTGTACATG----GTTAAAATTCATAGAAAATTTTGTTCTGTAAATGACTTGGGGATAGGGATTTG-TTCAGCTGTTTCTAGGAATTACACATGCCTAT-TTTGTCTACTGATTTGAAGG--GAGAAGAAAGTGGG-----------TCAAAGCCCAAATGGTTGTATTTAGAAGATACCTCAGATAATAACCATTGCTTTGCATACAGTTTTATTTACCATCGCCATTCAATAGCAGATAAGTTCTTGCATGAAACATCTAGTCTTTGAGATATTT-GAAGAGCTTGATACATTTAAAGGTACAGGTAGCAGAATAGTATTTTGTATATATAGTTTTCTAAACTG--GAGAAATGCTGTGTGTAGAAATAGAATTGTTAGCCCACCTCTGAGAACAGTGTACAGGCTGTATTTGTTCA-------------GGTGGAAGGAAGGAACTGCAAAAAG-ATGCCGTTA---GTGTGCTAGATATTTCTAGCTTACCCATTACCCTGTATGCTGTGTGTATCTCATGAAACTTTGCTATGCT--CTATATATTGTACATACTGGACAAATG-----AGTCCTATGATATCTAGTCTCTAGGTATTTAAGA-GGTTGCCAATGTATGACAAAAGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGTAAACTCACACATTCTGTATATTCTTTT----AGTTCATAGCAAGGTTGTCTTCTGAAGAG--------TTGTAAAAGTGTATGATCCAAGTGATGGGTGA---CTGTGTCACA--------GGACACAAGATGGGCTGAAGGGGAAGAAAGTATGGAGGCCAGAATGTTCTCAAC-AGAAGACACTTTGAGATCTAACTA--GTTACATGTGTGTGGTTTCAGCATTACTATGTATATAGGGGACAAATTTATGTCCTCATCTGAAATATCTACTCCTTCTAGGCATTTAGAAGTGCACAAAGTATATTAAAAGTAGACTTAGTAAATAATACTTGT------AGATTCTCCTGTTTAAACTCATGGTGAAGTGCTGTCTTTTGGAACTAGGAAGAGAAACTGCTTCTGAGCAATGCGGCCTTGCTTGTGTGGGTCTAGAAGGGAGGAAGAAAGAAAATGAATGAAGGGCCTAATGCTAATGCAAGTTTGGTAATGCAAGATTATCCATTGTTCCTTATATCTGTGCATTTTACTTTGC
s HiC_scaffold_1 152559225 2199 - 233722169 AAGTAGTAAAATAATGTGTTTTGTAAAT------TTGTAACACTCAT--GAAGTGTTATTTTGTCAGAGGAATAGGCAAGCCTACCTGGAGTAG------------TTATGCACTGGTTCTCGAAAGCAAAGTAAATGCAGAGTACTGCACTAGTGCACTTACAGTGAG-GCAAGTTGTGACTGTGCTTtatgtctgcattttgttttactttgccgTGTTCACAGGCTATGTAAAGGGTAAGTGAGTCTC--CTTTCAACACCTAGTCTGCCTAGATGTTAAA-AGATTGCCAGTTT-TGACAAAAATAGAGTTAATGAACTAACAAATT----TCGTACGCTTTGTGTTAAACTTCTTGGGAAAGATTGTCTTGTGAAAATTTGAGCACTTTAAGCCACTGGGTTAATTGGAGAAGGGAAGGATTCTAGACTAGAACACTCACATTTTCAAGATCCTTTTAACTATCATTGCATATGTCCAGTTTAATCAAGACTGCTCAGTATATATAATGGATAAATTGAGTCCTTACTTGAAATATCTAGTCATAGCTAAATGTTTAGAAGT--------------------AGA-------AAATATCACTTTGTAAGTAT---TTTTGCTAAAATTCacatgaagtttttttttgtgTGAATGGAATGGCCAAACCACCTCAAACAATATGGTACTGTCTGTGTTTG----ATGGTTTGGAAAAGGTGTGAGGGGAACAATTGCAAAAAATGGTGTTTTAGTGCATTT---------TGTATTTG-------GAcatttttaaacatcatttttctgtatgctttgtgggttttgtttttctgtgtataaAGAGACCGTATATCAggcaaataaattcaaattttgcaACATCTAGTCCTGATGTTAAATATGGACTATTTTGTTAAATATGGATGTAAATATTAAAGAGGTTTCCAGTATATGACGAAGTAGttaaatta-tacattttgtataCTTTATGTTGAAATACACAGAAAAGTTTGTCCT---------CTGGAAATGAAGTTTAGATTCAGTCATCGCCAA-CATTACAAATGCCTATACTTGTCCACTGGGttgaaggcagagaaagaagtgagGAAGGACTGGTTCTAGCCCAAAATGGCCATATTTAGAAGATACCTCAGATTTTAACTATTGTCACATGCACAATTTTACTTATCAGTGTGTATCA-CAGCAGACAAGGCTTTAAATGAAAAATCTAGTTCT--AGATACTTAGAAATACTTGGTATATTTAAAAGTA---GTAGTAGAATAATACTTTctataaattccttttaaaattgatggGAAATACAATGTTTGGAAATAGAAAGTTTAAACCACCT--GTGAACAGTGTACTGTCAGCACTTGTTCATTGGGTTGAAGGAGGTGGGAGGGAAAAATTGTGAAAAGTATTTTGTTAAGTGTATGGTAGAAAATTTCAGCTTCTCCACT-TCTTATAGGTTACATGCATTTCATTTAACTGTGCTACACTGTTTATCTAGTGTATATACTGGACCTGTGGCCCTAATTTTATCATATGTAGTCTCTGGATATTAAAAAAGGTTGCCAAAGTATGACAAAAGTAGAGTTAGTACTctccgggcatggtggcacacacctgtaatcccagcactcaggaagctgaggcaggaacattgctgtgagtttgaggccaggctaggctacatacagagttcaaggccaacctacactatagagtgagactttgtctccaaaaaatatTAGATTTAGTAAGCTAACACGTTTTGTATGCTTTgtattaaaatttgtagaaaggCTGTTCTCTGAAAAGGACAATAATTATAAAATCACAT---TTGAGTGACACATGCACCCAATGTCACATTTGGCAAGGAGagaaga--aattggaagaaatGGAAGATTCTAGACCATAATGATCCTACTTAGAAGACACTTTCAGATATAACCATTGTTACATGTTT----TCTCTGCACTGTTGTGTATATAGTGAACAAATTGA-GTCTGTATTTGAAGCATCTAATCTTTCTAGATGTTTAGAAGTACACAAAGGATGTTAAAAGTAGAGGTAGTAAACAACccatttttaaagatatcttttcattaaaattaataatggaATACTATCTTTAGGAAATGGAATGAGCAGTAG----------ATGTAGC------TGTGCTGGTTcagagagaaagcaggaaaaggaAGTGCAAAGGGCTTAA-ATCAGTGTGGTTTTGGGGAAGTATGATTGACCATTATTCCTTATGTCTGTGCATTATATTTTAC

a score=7202
s chr3            92641763 410 + 160039680 ATTACTCTTGTTACATGTGTGCCATTTACTGACTGCTGTGTACATAGTGA-CAAC---AGTCCTTATTTGAAACATCTGGTCTGTCTAGGCATTTAGAAGTGCCCAACGTATGTTAAATGTAGAGGTAGTGAAATATCACTTTGCAA--GTATCTTTTTTGCAAAA--ACTCATGAACTGTTGTCTTCTGGGAGTGGAGTGATGAGCCCCTCTGACCAGTACTGTCTTTACTTGTTCAGTGGTTTGGAGGAGGTGCTGGGAGGCAGTGACAATGGgtgtgtagtagtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgACCCTTTCAGATGCCATTTTTATATAC-TTGCATTTTGTTTTGCTGTGTGTATA-CTGTGTATAATGGACAAATATATCTAAATTTTCAACATCTAGACTCT
s HiC_scaffold_1 152561100 383 - 233722169 ATAACCATTGTTACATGTTTTC--TCTGC--ACTGTTGTGTATATAGTGAACAAATTGAGTCTGTATTTGAAGCATCTAATCTTTCTAGATGTTTAGAAGTACACAAAGGATGTTAAAAGTAGAGGTAGTAAACAACccatttttaaagatatcttttcattaaaattaataatggaATACTATCTTTAGGAAATGGAATGAGCAG----------TAGATGTAGCTGTGCTGGTTcag------agagaaagcaggaaaaggaAGTG-CAAAGGGCTTAAATCAGTGTG-GT-------TTTGGGGAAGTATGATTGACCATT----ATTCCTTATGTCTGTGCATTATATTTTACTTGCCTGCCTATGTAGTTTTATATAAAAGTAAAGGAGTCCTAATTT----ATATCTAGTCTTT

a score=22900
s chr3           92641808 786 + 160039680 AGTGACAACAGTCCTTATTTGAAACATCTGGTCT-GTCTAGGCATTTAGAAGTGCCCAACGTATGTTAAATGTAGAGGTAGTGAAATATCACTTTGCAAGTATCTTTTTTGCAAAAACTC----ATGAACTGTTGTCTTCTGGGAGTGGAGTGATGAGCCCC--TCTGACCAGTACTGTCTTTACTTGTTCAGTGGTTTGGAGGAGGTGCTGGGAGGCAGTGACAATGGgtg-tgtagtagtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgACCCTTT-----CAGATGCCATTTTTATATACTTGCATTTTGTTTTGCTGTGTGTATACTGTGTATAATGGACAAATATATCTAAATTTT-CAACATCTAGACTCTAGATGTTAAAGAGGTTGCCAATGTAAAACAAAGTAGTAAATTTAGCACATAGTGTACAT----GGTTAAAATTCATAGAAAATTTTGT--TCTGTAAATGACTTGGGGATAGGGATTTGTTCAGCTGTTTCTAGGAATTACACATGCCTAT-TTTGTCTACTGATTTGA---AGGGAGAAGAAAGTGGGTCAAAGCCCAAATGGTTGTATTTAGAAGATACCTCAGATAATAACCATTGCTTTGCATACAGTTTTATTTACCATCGCCATTCAATAGCAGATAAGTTCTTGCATGAAACATCTAGTCTTTGAGATATTT-GAAGAGCTTGATACATTTAAAGGTACAGGTAGCAGAATAGTATTTTGTATATATAG-TTTTCTAAACTG--GAGAAATGCTGTGTGTAGAAATAGAATTGTTAGCCCACCTCTGA
s HiC_scaffold_1 87021328 741 - 233722169 agccaaaataatcctc--tTGAAACATCTAGTCTTAGCTACATGGTTAGAAGTACTCAACCTATGTTAAATGGAGAGGTAGCAAAATATCACTTTGTAAATGTC-TTTTTGCTAAAGCTCATCTATGAAATACTGCCTTCTGAGAGTGGAATGGTTAACCACGTCTTGAGCAATA-TGATACTGCCTGTTCAGTGGTTTGGAGGAAGTG----------ATTACAAAAGGTATTACCTTAGTGCATTTGTAC---------TGAGACAGTCTGACacatttccccccccccccatgttt-----CATGGGTTTTGCTTTGCTgtgtatataacatatataatggACAA----ATCCAAATTTTGCAACATGTGGTTCCTAAATGT--AGGAGTTTGGCAGTGTATGGCAAAGTAGGAAAGTTAGCACATTTTGTACACTTTGTGTTGAAATGCACAGAAAAGCTTGTCCTCTGTAGATGAATTTTG----------TATTCATCCATCTCTAAT-ATTACATACACTTGTACTTGTCCACTGGGTTGAAGCAGAGAGAAGCAAATGG-----AGCCAAAATGGTCACACTTACAAGATACCACAGATTAC-ACCACCGCCATATGTGCAATTTTATTTACCAGGATTGTATGACAGTAGACaagtttttatatgaaaaatttattCT---AGATATGTAGAAGAGcttgatatatttaaaaatagaagt-------------------tctATAGATTTTATAAACTAATAGAAAATACAGTGCTTCTGAGTAGAATGTTTAAACCATCtctga

a score=16964
s chr3            92644805 420 + 160039680 TTGCTTTGTGTTTCTTTGTAAGCTGAG-ACTGAGCAAATGCAGAATT-TAATTGTAACTTTGCCAGTATGTCTATCTAGAGACCTGCTGCTATTTTTGTCTTCTATGAAATTTCTGTTGCCAAAGAAGACAGGATTACAATTTTGTCTGCAAGATTGAGATGGCATGGTGTATTCTTGGTTATC-AAAATCCTTGTGTAG-TGTGGGGTTTTTAGTTGGTGGATATTCACAATGTG-GGGAAAGCATGGTATATAGTGTATAATCTCAATTGCCCAA------GTGTGTTAAGCTTGCA--GGATGTAGAACAACACATCAAACTGAGCTGCTTGTGACTGGGTGACTTTGTTCTTGCCTTCTTGTGTTTTGTTTCCTGTAATGCACACACCAAA--AAAATAAATGAAAGCTTCCTTAAAAGAAAAACAATTTA
s HiC_scaffold_1 152562739 427 - 233722169 TTGCTTTATGTCTCATTTTAAATTGAGCATTAGGGAAATGCAGTATTGTAATTGTAACTTTACCAATAATTCTATCTAGAAGTCTGCTGCCATTTTcatcttcagtgaaatttttgtTCTCAAGAAAGGCAGGATTATAATTTTTTCTACAAGATTGAGTGGGTGTGGAATATTATTGGTTATCAAAAATATTCTTGTAGCTTTTGGattttttattggtaaatatTCATGATGTGTAGAAAAACATAACATAGATTGTATAATTTCATTCACACAAAAAGGCATGCTGTATGCATACATGAGACCTAGAAGGACATATCCAACTAAGCTGCTT--------GTGACTTTGTTCTTTGCTTGTcatgttttgtcttttgtaatgaaaatgttaactttaaataaataaagattattttacagtcaaaaaaatata

a score=26785
s chr3            92646466 703 + 160039680 AACTGAGCCTTAATTGGCAAAACTGATTTGTAAGA----TGCTTGGAGTCAAATAATCAAGAGTCTAGAGAAGATCGTTAGGGTAGAACTTTATTATTTTGTCCCCAAGAAGAC-------AAACCCAGCAATAGGGGAACATTTAAAACATTTCACAAGATTA---CAGCATCTTTGAGCCCAGGACACAAAAGGCAGC---AGGAGAGAAG---AACAGGCCAAGGAAGGTCCACTGAACATGGCTTTCTCCTGAATGGTTTGTCTAAAGT-GTTAGTTGCTCAGGTCAGCAGCAGC---------CTCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAG------GGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAG---GGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCT
s HiC_scaffold_1 138257852 689 - 233722169 AGTTGAACCCTGGCTGCTACCTCTGACCTGTGAGAATGATGCTGACA---AAAGAAACAAGGGGCCGGTGAGGCTCTGCATGATa---ctttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTG--GCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCAC---------------CGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCT------------------CCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTTTT

a score=29628
s chr3            92646468 1998 + 160039680 CTGAGCCTTAATTGGCAAAACTGATTTGTAAGA----TGCTTGGAGTCAAATAATCAAGAGTCTAGAGAAGATCGTTAGGGTAGAACTTTATTATTTTGTCCCCAAGAAGAC-------AAACCCAGCAATAGGGGAACATTTAAAACATTTCACAAGATTACAGCATCTTT---GAGCCCAGGACACAAAAGGCAGC---AGGAGAGAAG---AACAGGCCAAGGAAGGTCCACTGAACATGGCTTTCTCCTGAATGGTTTGTCTAAAGT-GTTAGTTGCTCAGGTCAGCAGCAGC---------CTCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAG------GGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAG---GGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGA----------------ATCATAATGCAAATTAGAACCAGGATCCTGGGGTCATCCTATCTACTTCTAAATATCAC----TGATAGTCATAGAAA-------------------------ATCTATATTCTGT-----------------AGTTTTATTTCTAACAAACCCCAAAGCATTCTGTGATAATGGCCTGTAGAGCCAAATTATCTTCTAAACGTTGACAGGAAAAAATAGGTTCTT------ATTCTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAATCTCCTGTAAAAACCCAT--------------AAG----TTGAGAGATTTCAT----------AGTCTG-----GAAGCA-TCTTCAGAATA------------ATTTCCTCCTCCACTTAATTTCTCTGAATGACATCTT--TTATAATGCCACTGGGCTTGAGCTACATCTATTGTATATCATATCATGATTCTTATAAGAGTTCTATGGATTCCTGAAGCTTTCCAAACTGATAAGGATAATGACATCAGAGAAGGAAGTAAAGATTATTGCTAGGTGTTCCAACTGCATTTAATAAAAGACCTAACTTATCCATTCCTGAAGCTATGAACC--AGGTCTTGTTCCTCATTTCAGGCAA-----ATCTGAACTCATGTCAGCACCCCATGTTGACTGGTGTTTGACATAATAATTCTTGTGCTCGTTGTCTTAAAATTTCTGAGCAGCCTGTGATCTAGTTCCAGATCTATGGCTCTGTCTGCTCCAGGCCCAAAGATCCCTTGGTACTGTGTCCTCACTGTTTG-----TCTTGCTTTCAAGGCTTTCCAAGAGAGCTGTTACAAGAGGGAGCCCCCTCCCTCCTGAAGCCTATCAAGGTCCAAGGCTTTCTGCATTTTAGGTTTTAATCCTGAGCCCCACTCCACAGGAGGGCAGAATATCCACTCTGGATTCT-TAAGTCAGAGGTACTCAATTCCTTCTAATACCTCCCATGAGTTTTAGAGTCCCCTGGACTCTACCATTCCTACCCAGCCTTCATTTTCCCCCATTGCTCTCTGCTCTGCTAA-CATGTCTCTGAACTCTGTGGCTTTACCCAGCTCTTTTCCACTTGCCACCTCTCCTCCTAGCTTCCTTCTAGTATAGGCCATGTTCCCAATCCCAATGGGCACTTACCAAGATTCCAGGTA-CACAAGATCTTTGGATACCTCGGAAGGTGAGTGAATGGAGGTGCTCTGTCCCTCAGCCCTTTTAAACTGACTCTGGGCTCTGC-CCAAACCTGTGAGACAGTGGTTGGGCATGAGAGGCCCTG---CCTACACTCACATGATCTTCTGATTAGTGATGAACAGATAGGTGTTCCTCACCAGCCTTCC-TCTGTGGAGCTCA
s HiC_scaffold_1 138197229 1925 - 233722169 CTGAACCCTGTTTGCTAACTCTGACCTGTGAGAATGATGCTGACA---AAAGAAACAAGAGGCTGGTGAGGCTCTGCAGGG-AATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTG--GCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCAC---------------CGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCT------------------CCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCACT-GAACACTGATTACTTCAGCTCAATTTCTGGTTCTCTCATTTTGAAAGTCAGGAAAATTACCTCTGACTTTTTTTAATCCCTCTTTGTAGTCTGTTAGGTCCTTTccttctgagttttattt----taaagctca------TTTGAGAAA-----TTGTCAAGCCATATAATCTCCAA-------ACACAAGAAGAGTGACTGTTAATTAAAATCTCTAAGTGTAGGAGAAATGACACAGAAGTAAACTTTGTCTAGTGTTAGCATTCATTCTGACACATCACCAAGATTTCTGAAAATATCCATTACAGGGAGCAGTTTGGGTATGAAGcactctttaagaaaaaaaaaaaaagtatttccttttggaagaaattt-----gaaaacattttggttTTGAAGAATATGAA---GAACTGTAACTACAAAGCAACTTGCAGTAACTT--------GTCCCA--------ACAAAGTTAACATATGAATGAAGAACGTAAAATCA---AAAGAAGTGAATTTGTTGGCCTAATGTTATCAGTGCATT-----ATTGATC-AGTTTCTAGTTTCCTGA--CTACTAATCCAAGGCTCTGTTCCTC----CGAGCAATCTTCTTGTGAGGTCTAACCAGACCCACAGGTGTTCTTATGTCT----------TTCTTCCTCTAAGTACC---AATGTCCTCAGca-ctttttttctaaaactagA--CATGGctatattt---------ccaaaattatatttcCATCACATACTCA-TGTTAGGATAATCTAGTGGCCAGTATTTT----------TATTA--------------------CCTG--------CAATCGCAAAAAC--------------------ATCATCAG--CTACT---------------ATAATCAATTTGGTTTCTCTAAAACTGTAGCACACAG---CTCTAAAAGTCTCCCAGTTGCTCTTGATCTT-----ACTCTACCTATCACCCTCTGCTTTCAAATTTTCTTGCTCCTCTCTTCCTTGCCAAGCACAATTCAAGTTCCTGGG---------------TTTTCGTATG----CTCTGGTCTGAGCATACCTCTGAGA-AGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGACT-TGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCTCCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAA----TCCTCATCTACCTTCCATTCACTGAGCTCA

a score=23413
s chr3            92646723 462 + 160039680 GTTGCTCAGGTCAGCAGC---------------------------AGCCTCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGAC------GGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGG---TGAATGCTCTG
s HiC_scaffold_1 138728647 438 - 233722169 GTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccac---------------caccactgctgc---AGCAGccactgc---caccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGG--------CAGGGGGAC--TTGGGTGGGCATTTGGGGGT---------------GCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATGAATGCGCTG

a score=15048
s chr3            92646725 446 + 160039680 TGCTCAGGTCAGCAGCAGCCTCCAGActgctggctactgccacagcagccactgctgccaccactgctgcc-acagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacag---cagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGC
s HiC_scaffold_1 138300154 374 - 233722169 TGGCCCGGCCATCAGTAGCCTCCAGA---------------GCAACAGCCAGAGCCACCAG-ACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGAC------------------TGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAGCAG------------------TCCCCTGAACTGGAGCTACAGCA--------GGTAGAGACT---GGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGG---------------AGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=11678
s chr3            92646767 406 + 160039680 cagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGG---GATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAG------GAAGACA--------CAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTG
s HiC_scaffold_1 138258136 392 - 233722169 CAGCAGCAACCAGAGCCCCCAGACTGCTG--------GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGA-AGAGATCTGCG-----AGGCCTGTGGTGGCT--CAG----GCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGG-----TTCTGCTG

a score=12003
s chr3            92646767 407 + 160039680 cagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGG---GATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAG------GAAGACA--------CAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGG
s HiC_scaffold_1 138197513 393 - 233722169 CAGCAGCAACCAGAGCCCCCAGACTGCTG--------GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGA-AGAGATCTGCG-----AGGCCTGTGGTGGCT--CAG----GCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGG-----TTCTGCTGG

a score=11911
s chr3            92646795 292 + 160039680 cacagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGG
s HiC_scaffold_1 138196594 277 - 233722169 CACATCAGCAATTA--GCCTCCAGATTGCTG--------GCTACTTCCTCATCCACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAGG-CTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGG

a score=9148
s chr3            92646797 408 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCG------ATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACAC---AGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGG----TCTG---GCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTG---CTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAA
s HiC_scaffold_1 138377564 376 - 233722169 CAATAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA-GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------GAGCCACAGCAGCTCCCAGAGCTGGAGCC------------------------ACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTG---GGACACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGA

a score=10512
s chr3            92646805 422 + 160039680 actgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgc--tACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAA---TTAGAACCAGGATCCT
s HiC_scaffold_1 138439680 345 - 233722169 ACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAG-ACTGCAG--------ACCACTGTCGCCATCACAGGAGTCTGATCTCCAGAGCC--------TGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAG---------CAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGC------------GGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAATTTT------accttgaaataa----aatgcaaatatttaaacCCAGAAACTT

a score=13860
s chr3            92646818 573 + 160039680 ctgctgccacagcagccact---------gctgccaccactgctgccacagcagccactgctgccacca--ctgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGA----ATGCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCC-----TGGGGTCATCC------TATCTACTTCTAAATATCACTGA--------------TAGTCATAGAAAATCT--------ATATTCTGTAGTTTTATTTCTAACAAACCCCAAAGCATTCTGTGATAATGGCCT------GTAGAGCCAAATTATCTTCTAAACGTTGACAGGAAAAAATAGGTTC--TTATTCTTaaaaaaa
s HiC_scaffold_1 138135515 554 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCT---ATAGCAGCTGGAGACCCCAGCAGCTGGCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG-----------------------------ACC-------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCA-AATACAAGTCAGGA-CagaattctcttttattttcttcctactaGTATTTATTTCCAAACATTGTTAAAGATTATTCAAGGCAAAttgtagaaaaattaaatttaaataatttgtcaTATTACTT--------CATCAGATCATT-----ATAATATcttcataaaagagaaacaagttATCTTctaa----tgaaggaaggaaacaagaacAATTATATTTACCAAAA

a score=10803
s chr3            92646818 1656 + 160039680 ctgctgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccacc-----actg-ctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCC------------------------CCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGA---GGGCATTTTGGGGTCTG-GCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGC--------AAATTAGA-----ACCAGGA-------------TCCTGGGGTCATCCTATCTACTTC--------TAAATATCACTG-ATAGTCATAGAAAATCTATATTCTGT-AGTTTT-----ATTTCTAACAAACCCCAAAGCATTCTGTGATAATGGCCTGTAGAGCCAAATTATCTTCTAAACGTTGACA-------GGAAAAAATAGGTTCTTATTCTTaaaaaaaaaaaaaaaaa--------------aaaaaaaaaaaaaaaCAATCTCCTGT-----------AAAAACCCATAA-------GTTGAGAGATTT-----------CATAGTCTGGAAGCATCTTCAGAATAATTTCCTCCTCCACTTAATTTCTCTGAATGACATCTTTTATAATGCCACTGGGCTTGAGCTACATCTATTGTATATCATATCATGATTCTTATAAG---------------AGTTCTATGGATTCCTGAAGCTTTCCAAACTGATAAGGATAATGACATCAGAGAAGGAAGTAAAGATTATTGCTAGGTGTTCCAA-----------------CTGCATTT--AATAAA---AGACC------TAACTTATCCATTCCTGAAGCTATGAACCAG----GTCTTGTTCCT--------CATTTCAGGCAAATCTGAACTCATGTCAGCACCCCATGTTGACTGGTGTTTGACATAAT-AATTCTTGT-------GCTCGTTGTCTTAAAATTTCTGAGCAGCCTGTGATCTAGTTCCAG-----ATCTAT--------GGCTCTGTCTGCTCCAGGCCCAAAGATCCCTTGGTACTGTGTCCTCACTGTTTGTCTTGCTTTCAAGG----------CTTTCCAAGAGAGCTGTTACAAGAGGGAGCCCCCTCCCTCCTGAAGCCTATCA----AGGTCCAAGGCTTTCTGCATTTTAGGTTT----TAATCCTGAGCCCCACTCCACAGGAGGGCAGAATATCCACTCTGGATTCTTAAGTCAGAGGTACTCAATTCCTT---------------CTAATACCTCCCATGAGTTTTAGAGTCCCCTGGA--CTCTACCATTCCTACCCAGCCTTCATTTTCCC-CCATTGCTCTCTGCTCTGCTAACATGT-CTCTGAACTCTGTGGCTTTACCCAGCTCTTTTCCACTTGCCACCTCTCCTC--CTAGCTT--CCTTCTAGTATAGGCCATGTTCCCAATCCCAATGGGCACTTACCAAGATTCCAGGTACACAAGATCTTTGGATACCTCGGAAGGTGAGTGAATGGAGGTGCTCTGTCCCTCAGCCCTTTTAAACTGACTCTGGGCTCTGCCCAAACCTGTGAGACAGTGGTTGGGCATGAGAGGCCCTGCCTA-CACTCACATGATCTTCTGATTAGTGATGAACAGATAGGTGTTCCTCACCAG---CCTTCCTCTGTGGAGCTCATGGATGCT
s HiC_scaffold_1 138154332 1771 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-------GCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAG--TCAAATTGCGTCAGAAAAAGTCACAGGCCAACCAGcacactttttatcttttctgattcATTTCTAGCTGCTTCATTTTGATGAACTATTGAAGTATAGTCCTA---CATATTTAATCAGTGAGTGTTGGAAAATTTCTAGCAATTCAGTAAATACTCTTGAACTGTCtctttttagtctcaatttcctttttaatcattATGCTTTTTTACAAAGCAGGGAATTTGGTGTGTAAAGCACATGAGAAAAATTGCCAAATTTAACATGAAGTTAAGAAGGCAGTTTCTTCTCCCTGTTACCTAGAAACCTAGAACTGTCTAGTCTAGGAACATGGGAATGTAAACATATTCTTGAACAATGAGAAGGTTGAATTTGCTCTTGGAGTAACttcactgta-gtttttttctGCAAAACC-TTGGTCATGAACAG------TTATAAAT---------ATTCTTAGAGACTGGCTCGAGAGACCAACTCCCTTTGTTTATGAAG------AACCTGA--AGAACAGT-ACTTTGTATGGAGACCTGCAAATTGAAGTCAGGTACCCTGCTCTATTGAGCTGGAACTCTGCATTTCTAGCATACTGAGGCCACATAATTATTTCTCCGT-ACTGAAATTCTCAACCTGTTGTGTCCAGTTTATGACCATATTACCTTGAACACACCCAATCTCATCTGATCTCTGGA-GTTAAGCAGGGTAAgacctggttagtacttggatatGAAGCCTGTTATATCCAACTTCTTAAATTAATT----TCTGGTTCCAGTTAAGATCCATAAATAGACGGCATTG------------CAAAAAACCCCAAAGGATTCtacatttatt-----tctatctttaaagGTTATTATCATCTTTCCTAGGAAAC-ATGACAGG-------------CTTCTTGAAGATGATCATTCTAGACAATATGTTGACTGGGACTTCAGTCTCCTCTGACCTTAGAGCTCAGCCTGTGGTAGACCA----ATTCATTTCAG---CAGAAAGGAGAACCATGTAATTCTTTATGTTTCCAGTGGACCTACCACCTCCCA-------------CCCTTGGAAATTGTGCACTTCCT--CCA---TTTGTCTTCCTGCTACTTCTCTCC-CTTTGTCCATGTGGACTCCAGGTCCTGGGGATG-ACCCAG---TCTCCCAT------CCTGTTCTTGTCTAGGGTAACCCTCCAGAAAAGCTCTTATTCCTGTACACAGTAGACACTTACCAAGGTCACAGGCAGTACAGGTCTGTGAACACCTCAGGAGGTGAGTGGATGGAAGTCTTCTGGCCCTGAGTCACTTTACACTTGCCTTGGGCTCTTCCC--ATTTATGAGACAAAACATGAATATGGGACCCACATCCAGCCACTCACAT-ATTCTGTGACTGGTGATGA----GTTGCATTCCTTCACCTGGCAGCTGCCTTTACAGGGCTCAAGAAAGTT

a score=18765
s chr3            92646821 477 + 160039680 ctgccacagcagcc----actgctg-ccaccactgctgccacagcagccactgctgccaccact---------gctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCT---GCTGGTGA-ATGCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCCTGGGGTCATCCTATCTACTTCTAAATATCACTGATAGTCATAGAAAATCTATATTCTGTAGTTTTATTTCTA
s HiC_scaffold_1 138145831 443 - 233722169 CTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGC------TGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCC------------------CCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACAC------------TTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTA-AATTCAAGTTAGATGCAGGAAAC--AGGCCACCCTGCCCGCTCATTCTTTCTATTG------------AATTTCCACTctgt-gttttagtttta

a score=10143
s chr3            92646824 416 + 160039680 ccacagcagccactgctgccaccactgctgccacagc---agcc-----actgctg----ccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-----CTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAA----TTAGAACCAGGAT---CCTGGGGTCATCCTAT
s HiC_scaffold_1 138647038 386 - 233722169 CCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCGGGGAACCTGGAGAGAGCAAGGAAAAAGCTCATTGAAAAAGTTTTAGGCCAATGGTATCTCTGGGATCATTTTAT

a score=10021
s chr3            92646827 340 + 160039680 cagcagccactgctgccaccactgctgccacagcagcca--ctgctg----ccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138633189 292 - 233722169 CAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT

a score=9552
s chr3            92646827 341 + 160039680 cagcagccactgctgccaccactgctgccacagcagcca------ctgctgccaccactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 138613655 292 - 233722169 CAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGG------------AGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTC

a score=13330
s chr3            92646827 340 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138408318 316 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAG------GAA----GACACCAG-AGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=12870
s chr3            92646827 340 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctACAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGG--GGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138368923 316 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAGA--------GGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=25732
s chr3            92646827 1713 + 160039680 cagcagcc-----actgctg-ccaccactgctgccacagcagccactgctgcc--accactg-ctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAAT----GCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCCTGG--------GGTCATCCTATCTACTTCTAAATATCACTGATAGTCATAGAAAATCTATATTCTGTAGTTTTATTTCTAACAAACCCCAAAGCATTCTGTGATAATGGCCTGTAGAGCCAAA-TTATCTTCTAAACGTTGACAGGAAAAAATAGGTTCT-----------TATTCTTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--------aaCAATCTCCTGTAAAAACCC------ATAAGTTGAGAGATTTCATAGT-CTGGAAGCATCTTCAGAATAATTTCCTCCTCCACTTAATTTCTCTGAATGACATCTTTTATAATGCCACTGGGCTTGAGCTACATCTATTGTATATCATATCATGATTCTTATAAGAGTTCTATGGATTCCTGAAGCTTTCCAAACTGATAAGGATAATGACATCAGAGAAGGAAGTAAAGATTATTGCTAGGTGTTCCA----ACTGCATTTAATAAAAGAC---CTAACTTATCCATTCCTGAAGCTATGAACCAGGTCTTGTTCCTCATTTCAGGCAAATCTGAACTC-------------------ATGTCAGCACCCCAT-GTTGACTGGTGTTTGACA--TAATAATTCTTGTGCTCGTTGTCTTAAAATT--TCTGAGCAGCCTGTGATCTAGTTCCAGATCTATGGCTCTGTCTGCTCC---AGGCCCAAAGATCCCTTGGTACTGTGTCCTCACTGTTTGTCTTGCTTTCAAGGCTTTCCAAGAGAGCTGTTACAAGAGGGAGCCCCCTCCCTCCTGAAGCCTATCAAGGTCCAAGGC-TTTCTGCATTTTAGGTTTTAATCCTGA--GCCCCACTCCACAGGAGGGCAGAATATCCACTCTGGATTCTTAAGTCAGAGGTACTCA-ATTCCTTCTAATACCTCCCATGAGTTTTAGAGTCCCCTGGACTCTACCATTCCTACCCAGCCTTCATTTTCCCCCATTGCTCTCTGCTCTGCTA-ACATGTCTCTGAACTCTGTGGCTTTACCCAGCTCTTTTCCACTTGCCACCTCTCCTCCTAGCTTCCTTCTAGTATAGGCCATGTTCCCAATCCCAATGGGCACTTACCAAGATTCCAGGTACACAAGATCTTTGGATACCTCGGAAGGTGAGTGAATGGAGGTGCTCTGTCCCTCAGCCCTTTTAAACTGACTCTGGGCTCTGCCCAAACCTGTGAGACAGTGGTTGGGCATGAGAGGCCCTGCCT----ACACTCACATGATCTTCTGATTAGTGATGAACAGATAGGTGTTCCTCACCAGCCTTCCTCTGTGGAGCTCATGGATGCTACATCCAGCATGGATGATGATGTAGACATAAGATGAGGAACTGGATTCCTGTTAACCTTCATCTCA
s HiC_scaffold_1 138180364 1612 - 233722169 CAGCAACCTCCAGACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCA-AATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGATT--CTCTTAGCATCACTTG-AGCCATAGAAACATCATCTCAAGTGGTTTTATTTCTGAT----------GCTTTCT-CCATATT--CTTACACCATCACATTTATCTCTCTGAATTCTACATGCACATAGAAGTTGCATAAGAATTGACATTGTTATACAACAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAACATCTTGAGACTAAAATTGCCC-------AAtttcagggaa-aatattttttaaaagaaaa---------agcatcaTTTCT------TCTTGTCATAA--CCTATAAGA---------------TGATCTTATCATGCAGGTCAGGGT---------TGCTAAGGATCTAGAGAATA---CCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAACTTATCAAATCCTGCAGACGTG-----GGGCTTG-----AATCTCAGGCAGTCCAGAGCTAGGTTCAGTCCAGAGCTCAGATGTCCTCAGTTCACAGCTAACTGGGGTTTATAAGTTAGCAGGTCTCAGACATGTGGTATCCTAATTAACTTGAGAAA--TACCAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCCCAGAAAAGCACTTGGTTTTCTCTTC----------CCTTGCTGTCAGGAAC-----AGGGATGTATTCTCAGAGGTATACTCC----------ATCCTGTCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTCTTGTCCTGATGAGCCTACTGCAC-TCAGAGAAATTTGTTCTCTCCAGA-ACCCaaggcatatacatatatattttccctCGTTTCTTTACT--GCTGCAGAGCCTTGT-----------TTTGTTCCCATCTTTTAGTCTTCCCTAAATTCTCCTCCTCTGAAAGGTACCCCTCTCAACTGAG------------GTCCCTTTCCA---GCCACCTCTCCTACTG--------------------------CTATTTTCAATGGAGACTTACCAGTGTCACAGGAGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGTGCCCTTTTATTGGGCCCATGAGCTCTTCTTTAGC--ATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATGATATTGTGTAAAATGGTGAC--------TGTTTCTCACCTATCTTCCTTCGTCACGCTTAGAGAGACGA-----AGTCTTGATAGGAATAGAGTGGCAGGTTAAGGAGCAATTTTTATATGAGCTGTCATTTTA

a score=9796
s chr3            92646830 338 + 160039680 cagccactgctgccaccactgctgccacagc---agcc----actgctgccac---cactgctACAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 138474316 291 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAG------------------------GGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTC

a score=15827
s chr3            92646838 329 + 160039680 gctgccaccactgctgccacagcagccactgctgccac------cactgctACAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGA--------CACTTGGGA-------GGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138333241 338 - 233722169 GCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=9500
s chr3            92646916 262 + 160039680 GGATCTGCGGGGTCTGTGATGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGACACAGGGGGACACTTGGGAGGACAC---TTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTG--GTGAA
s HiC_scaffold_1 138528501 252 - 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTGAG----CAACAGCAGGAAGAGCCTGGAGATCAGCAGG-----------GTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAGTGAA

a score=5152
s chr3            92646936 238 + 160039680 GGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCATCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAGGAAGAC--ACAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGG
s HiC_scaffold_1 138470356 171 - 233722169 GGCTCAGGCAGCAGCTGCCATCCCAAGAACTGCATCAGCGTCCAGAACTGGAG------CCATAGCAGGA---------------AGGGCCTGGAGATGAGCAGGGGGCTGGACAGAGGGACA--------AACAGTT----------------------------------------GGAGAACACATGGGATGTGGTCTCCACTGCTGCTGGTACTAACAGCAGTACATCTCAGCTGG

a score=5529
s chr3            92646967 160 + 160039680 GCAGCAGCC-----TCCAGAACTGCAGCATCC----------------CCC--AGAGCTGGAGCCACAACAACCCCCAGAACCCAGACTACAGCAG--------GAAGACA------CAGGGGGACACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGA
s HiC_scaffold_1 138154449 194 - 233722169 GCAGTAGCCACCACTCCAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGA

a score=5396
s chr3            92647048 164 + 160039680 AGGGGGACACTTGGGAGGA---------CACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAAT
s HiC_scaffold_1 138112526 150 - 233722169 AGGGGGACATGAAGAAGGAGCTTGTGGGCACTGAGGGTGGCAATCAAGTAGACATTTTGGGG---------------GGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCT----TGGAGAATGTTCAAAGAGCCTAGAA----CATAATGCAAGT

a score=6661
s chr3            92648096 358 + 160039680 CTCTACCATTCCTACCCAGCCTTCATTTTCCCCCATTGCTCTCTGCTCTGCTAACATGTCTCTGAACTCTGTGGCTTTACCCAGCTCTTTTCCACTTGCCACCTCTCCTCCTAGCTTCCTTCTAGTAT------AGGCCATGTTCCCAATCCCAATGGGCACTTACCAAGATTCCAGGTA-CACAAGATCTTTGGATACCTCGGAAGGTGAGTGAATGGAGGTGCTCTGTCCCTCAGCCCTTTTAAACTGACTCTGGGCTCTGC--CCAAACCTGTGAGACAGTGGTTGGGCATGAGAGGCCCTGCCT----ACACTCACATGATCTTCTGATTAGTGATGAACAGATAGGTGTTCCTCACCAGCCTTCCT
s HiC_scaffold_1 138136890 355 - 233722169 CTCTTCCATCTCT-CCTGTCCCACAGTTTGTCCTCTTTCTCAGAGCTTCTAGACCTTGTATCC-----CTCTGCCTTT--CCAACTTCTCTCTGCT--CTGAATGCCCTGATAAGCCTCCTCTTGTACTGTGAAAATCCTTGTTTCTGTTCCCAGTGGACACTTACCAGGGTCTCAGACAGAAAAAGACCTATGGACACC-CAGAACACGAGCAGATGGAAAGGCTCTGGCCTGGGGCCCTTTTATCTTGGCCTTGGCCTCTGCCTCCACATATATGAGACAGAGTCTAAGCATGGGAAGACCTGCTTTATGGCACCCACCCAGGCT----ATGACAGATG-ATACCTGGGTGCCTTTCATCTGTCTCCTT

a score=26134
s chr3            92655595 631 + 160039680 CTAATAACACTGACTTGGAAATATGCTGTTGTCAAAAATAAACACAAGTTTACTCGTGTTTGCAAGGGGAGACTTTATTATT--GCAATTT------------------TGTCATTTTAGGGGAAAGTCACAACTTTGCAGAGGATCACC---------AAGAGTCCAGAATACAAAGCACA---ACAGAAAGGAATG---GCAGGCAGTAGCA--------------------CTTCTCCACAGCTTGTCTGAAGTGCAAGGGCCCTGATCAGCAGCAGC---------CCCCAGActgctggctactgccac------------agcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAG------GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138257865 674 - 233722169 CTGCTACCTCTGACCTGTGAGAATGATGCTGACAAAAGAAACAAGGGGCCGGTGAGGCTCTGCA---TGATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCT------------------CCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCAC------------TTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=28644
s chr3            92655599 676 + 160039680 TAACACTGACTTGGAAATATGCTGTTGTCAAAAATAAACACAAGTTTACTCGTGTTTGCAAGGGGAGACTTTATTATT--GCAATTT------------------TGTCATTTTAGGGGAAAGTCACAACTTTGCAGAGGATCACC---------AAGAGTCCAGAATACAAAGCACA---ACAGAAAGGAATG---GCAGGCAGTAGCA--------------------CTTCTCCACAGCTTGTCTGAAGTGCAAGGGCCCTGATCAGCAGCAGC---------CCCCAGActgctggctactgccac------------agcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAG------GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTGGTGAGTGCTCTGGAGCTGTAGAAGAGTAACACACATGTCAGAC
s HiC_scaffold_1 138197244 720 - 233722169 TAACTCTGACCTGTGAGAATGATGCTGACAAAAG-AAACAAGAGGCTGGTGAGGCTCTGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCT------------------CCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCAC------------TTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG-TGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGAC

a score=9388
s chr3            92655785 441 + 160039680 CTTGTCTGAAGTGCAAGGGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138613628 318 - 233722169 CTCATCTGAACATCA--GATCTAGATCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAG----------ACTACCG--------ACCACTGTCACCATCAC------------------------------------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGG------------------------AGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCT

a score=10362
s chr3            92655786 443 + 160039680 TTGTCTGAAGTGCA---------AGGGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGG
s HiC_scaffold_1 138647010 332 - 233722169 TTCTCTGAAATGTGCGCATCATCAAGATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG--------ACCACTGTCACCATCAC---------AGGAGTCTGAACT----------CCACAGCCT-----------------GCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=20697
s chr3            92655793 1293 + 160039680 AAGTGCAAGGGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT---AGGCTGGTGAG-TGCTCTGGAGCTGTAGAAGAGTAACACACATGTCAGACTTAGGAATCTGGGGCTATCCTGCCCCCCAAGCATCTATAATTATCATAGACACACTATCTCTAGTAGTTCTGTTGTAGAATGTTTATCCTCTT--------ACATGCTCATTATTGTTTT-----TTGGAAGCTTCAAAAACCTACACAAGTCAGGTAAAAACTGACATTTAGTGTCTAGCATCGAATGACAAGCTAGGCATTA----------TGAAATGTGTCTGAATCG-CTAACTTGGAGATTAACTGTTT---------AAAGCATCATTTCAGGGAAA-------ATGGATTTCAC----------------------TGCAAAGAGA-----GCCTTTTCTGTCTCTGTCTCTTCCTTTGAATGC-TAGGCCAGGG------------CTGTTTCAGAGTGCATCAATTGAATATGCACAATTTTCTGTGCTTCTGAGAGAC-----CCATTCC----ACCAAAGA------AGCTTATTGTGT----------------------------GCAGAGCCCTAAGT-----------CAAATG--------GATCCTGACTGCTTATGCCT-CCTATGGA----TGTCAGAATGCCCTTTTCTCTACCC-ATCATTCTGGCCCACC------------------TTAAGTCCTCTGTAAGAGTGG-----CCTCCTGGCTCTG---TAGTTCTACACAGCCTCC---CATCCAGC------TCTCCTCTCAGCTT----TCCTCTAGTACAGACCATGCTCTTGCTCCCAATGGACACTTACCAAGATGACAGACAGCACAAGATCTGTAGCCACTTCAGGAGG--ACTGGATGGAGATGCTCTGCCACTCAGCCTTTTTATTCTGATCCTGGGCTCTGCC-CAACCTGTGAGACAGTGGCTGGGCATGGATGACCCTGACTCCTGACACCCATGTGGTTCTGTGACTGGAGATGACATGAGTTTCTCACCAGCCTTCCTTCATGGGTCTCAGG
s HiC_scaffold_1 138145816 1351 - 233722169 AAGATTAAGGATCCCCTTCAGCAACAGCCCC-AGATTGCTGGCTACTCCCCC------------------------CTCCACAGCAGCTGGAGCC-CCTCGAGGGCTG--------------------------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCC------------------CCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGG------------------------GGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATGCAGGAAAC--AGGCCACCCTGCCCGCTCATTCTTTCTATTGA--ATTTCCACTctgtgttt--tagttttagt--------ttcattcaccgaaaaaaaaaaatccccagcacTATTTTCCTTACTAGAA-----AGAGATCATTATTTGACAAATAGAAAATACTATCAAATATC-ATTATAAAGTGTAAAGCACAGTTTTATGCtaaatattgaaattattctATATAGTCTAATTCAGAACTGAAATAATTCcttagtagaaaaaataatatcctGTAAACATCTTCAATGATTCTACATCCCAGCATTTGCAATCAGAATGAAAAGGGATCGTGGCCATTTCTTGATCTG-CTCACGCTATGAAGACAGAAGCTAAGAATAAATGAAGATCTGTGCAGAAGACCCTTGACTCA--CAGTCCAACTCTCTGATGTTCTCATAAACAGAAACTCTTCCTTGATCTAGAGATTATTTCACTTCTCGtgttacttgaaatattttcccAGACCCTTTCTCATAGCCATGTGTGCATTAATCTCCAAAAGATCTCCCTGATCCTATCCTTGTTTGCAGATCTCTGGAATTCTTTTAGAGTATCATTCTCTCACCCTAAGCATTCTAAACAACCAAGGATCTGCCAGGTTCTCAAAGCCCTGGGAAGGAATCAAGACTCCTTCTGTTCTTGAAATAGATC--CATAGGCTTTTTGCTTCCAGCCACTCTCCTTCTCTGGACTGTGAATCTCCTTAGAAAATCCCTACTCCTGTTCTCAGTGGACACTTACCGAAGT--CAAGGAGCTCAGAGTTTGTGAACACCTCAAGAGGTCAATGCATGGA-ATGCTGTACCCCTGAATCCTTTTA-TCTGA-----GGCTCCACCTCAGCAGGTGAGACAGAAGCAAAACATGAGAGAACCCAACTCCAGTCACCCATATGGTGCTGTAACTGGTGATGAC-TGAGTGCT-------CCTCCTTCCATGTTGCTCAGG

a score=12924
s chr3            92655800 473 + 160039680 AGGGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTGGTGA----GTGCTCTGGAGCTGTAGAAGAGTAACACACATGTCAG
s HiC_scaffold_1 138135510 360 - 233722169 AGAGTCCACTTCAACAGCAGCCTCCAGATTGTAGGCTGC------------------------CACCCTCTCTATAGCAGCTG--------------GAGACCCCAGCAGCTG--------------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCC------------------CCAGAGTTGCAGCAGCCCCCAGAACTG-----------ACC-------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGT------------AGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=10287
s chr3            92655801 428 + 160039680 GGGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGG
s HiC_scaffold_1 138633176 308 - 233722169 GGATCCAGGTCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAG----------ACTGCCG--------ACCACTGTCACCATCAC------------------------------------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=15908
s chr3            92655802 427 + 160039680 GGCCCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGgggc------------acttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGG
s HiC_scaffold_1 138333227 355 - 233722169 GGCCCAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGGTGTC-----------------------TGTGGTGGTAGGGAAAGAGG------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---------------GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=15240
s chr3            92655805 425 + 160039680 CCTGATCAGCAGCAGCCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcagccactgctaccaccactg---ctgccacag---cagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGC
s HiC_scaffold_1 138300157 371 - 233722169 CCCGGCCATCAGTAGCCTCCAGA------GCAACAGCCAGAGCCACCAGACTGCTGTC--TATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTT------------------CCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAG---GTAGAG--------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACAC---------------------------TTAGGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=10237
s chr3            92655808 428 + 160039680 GATCAGCAGCAGCCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTGGTGA
s HiC_scaffold_1 138439675 307 - 233722169 GGTCAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAG--ACCACTGTCGCCAT---------------------------CACAGGAGTC-------------------TGATCTCCAGAGCCT--------GCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAG---------CAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGC------------------------GGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG-TGGTAA

a score=12047
s chr3            92655809 325 + 160039680 ATCAGCAGC-AGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttgg
s HiC_scaffold_1 138196597 274 - 233722169 ATCAGCAATTAGCCTCCAGATTGCTGGCTACTTCCTCATC------------------------CACAGCAGCTGG---------------------AGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGG

a score=23832
s chr3            92655809 437 + 160039680 ATCAGCAGCAGCCCCCAGActgctggctactgccaca---------gcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGAC------GGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTGG---TGAGTGCTCTGGA
s HiC_scaffold_1 138728683 404 - 233722169 ACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGG---------CAGGGGG----------------------------ACTTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATGAATGCGCTGAA

a score=7851
s chr3            92655810 365 + 160039680 TCAGCAGCAGCCCCCAGActgctg---gctactgccacagcagccactgctgccacca---------ctgctgcc-----acagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACC------ACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttgg---agggcattttggggtctg-gcatttgggagggcacttggggg
s HiC_scaffold_1 138154337 319 - 233722169 TTAACAACAGCCTCCAGACTGCTGCTTGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAGGCAGTGGCAACTA-TAGCATTGTGGTGGTTCAGGCAGTA------GCCACCACT----------CCAGAGCTG---------------------------------------------CAGCAGCC------AACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAG

a score=22280
s chr3            92655810 622 + 160039680 TCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTGGTGAGT----GCTCTGGAGCTGTAGAAGAGTAACACACATGTCAGACTTAGG---------AATCTGGGGCTATCCTGCCCCCCAAGCATCTATAATT--ATCATAGACACACTATCTCTAGTAGTTCTGTTGTAGAATGTTTATCC----TCTTACATGCTCATTATTGTTTTTTGGAAGCTTCAAAAACCTACACAAGTCAGGTAAAAACTGACATT
s HiC_scaffold_1 138180360 559 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCC------------------------CTCCACAGCAGCTggagcctcc-------------------cgagggctg--------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGT------------GGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGATTCTCTTAGCATC---ACTTGAGCCATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATCTCTCTGAA-TTCTACATGCACATAGAAGTTGCATAAGAATTGACATT

a score=10438
s chr3            92655835 426 + 160039680 ctactgccacagcagccactgctgccaccactgctgccacagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT---AGGCTGGTGAGTGCTCTGGAGCTGTAGAAGAGTAA
s HiC_scaffold_1 138377555 382 - 233722169 CCATTTTCTCAATAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA-GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------GAGCCACAGCAGCTCCCAGAGCTGGAGCC------------------------ACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTG----GATATTTTGGA-TGTACTTGGG---ACACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAA

a score=12336
s chr3            92655865 361 + 160039680 ctgctgccacagcagcc-----actgctaccaccactgctgccacagcagccactgctgccacc-----actg-ctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAG--------GAAGACA------CAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138154332 363 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-------GCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCT

a score=12859
s chr3            92655874 352 + 160039680 cagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAG-AGCT--GTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAG--GGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138368923 316 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAG---GAAGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13832
s chr3            92655874 352 + 160039680 cagcagccactgctaccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAG-AGCT--GTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACA-CAGGGgggcacttggga--ggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138408318 316 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCC------------------------ACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=9039
s chr3            92655877 349 + 160039680 cagccactgctaccaccactgctgccacagc---agcc----actgctgccac---cactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138474316 290 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcagg------------cagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCT

a score=9671
s chr3            92655900 326 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTG---------------GCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138398589 282 - 233722169 GCCATGGCAGCAACCAGAGTCCCCACTGGGCTCACACTTAGAGCAGTTAGGAGCTTAGGGCCTGCAGTAGGAGCAGAGGA---TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAG-------------------CCCCAGAGCTGAAGCC------------------------ACAGCAGGAAAATACTGG---------AGGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAG---GGCACTTCAGTGGGTATTT-TGGGTGCACTTGAGAGGGGACTGGCactgctgctgcttttgctgacAGGATGTCT

a score=9013
s chr3            92655963 269 + 160039680 GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggaca---ttttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTAGGCTG
s HiC_scaffold_1 138528501 245 - 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTGA----GCAACAGCAGGAAGAGCCTGGAGATCAGCA-----------GGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGC------------AAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTG

a score=3690
s chr3            92656014 172 + 160039680 GCAGCAACCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAACAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgg----gcacttgggaggacattttggggggcactttggagggcattttggggtctggcatttgggagggcacttgggggtgcacttggga
s HiC_scaffold_1 138377705 146 - 233722169 GCAACAGCCACCA------------CCCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCT-------------GGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAAC---ACACTTTGT-GGATATTT-TGGATGTACTTGGGA

a score=7140
s chr3            92656736 456 + 160039680 CTCTACCCATCATTCTGGCCCACCTTAAGTCCTCTGTAAGAGTGGCCTCCTGGCTCTGTAGTTCTACACAGCCTCCCATCCAGCTCTCCTCT----------------CAGCTTTCCTCTAGTAC------AGACCATGCTCTTGCTCCCAATGGACACTTACCAAGATGACAGACAGCACAAGATCTGTAGCCACTTCAGG--AGGACTGGATGGAGATGCTCTGCCACTCAGCCTTTTTATTCTGATCCTGGGCTCTGCCC---AACCTGTGAGACAGTGGCTGGGCATGGATGACCCTGACTCCTGACACCCATGTGGTTCTGTGACTGGAGATGACATGAGT--TTCTCACCAGCCTTCCTTCATGGGTCTCAGGCATGGACTATGATTTAGGTATGAGATGAGGAGGAGTGGATTCCTGGCACCCTTAGCTTCACATACCTGAAGGGCATGTGCTTTAGAGATTGCTCATTCCTTAGTCT
s HiC_scaffold_1 138136890 457 - 233722169 CTCTTCCATCTCTCCTGTCCCACAGTTTGTCCTCTTTCTCAG-AGCTTCTAGACCTTGTATCCCT------CTGCCTTTCCAACTTCTCTCTGCTCTGAATGCCCTGATAAGCCTCCTCTTGTACTGTGAAAATCCTTGTTTCTGTTCCCAGTGGACACTTACCAGGGTCTCAGACAGAAAAAGACCTATGGACAC-CCAGAACACGAGCAGATGGAAAGGCTCTGGCCTGGGGCCCTTTTATCTTGGCCTTGGCCTCTGCCTCCACATATATGAGACAGAGTCTAAGCATGGGAAGACCTGCTTTATGGCACCCACCCAG-GCTATGACAGATGAT-ACCTGGGTGCCTTTCATCTGTCTCCTTAAAAGGACCACTTCCCTG--------TTTAGA-ATATTAAAAGGAGTGGTGAAT-----GAATTCTTACATTCATCTGCC--AAGTTACTGTCCTT--GATGGTGCCCATCTGTCAGTCT

a score=10489
s chr3            92656818 267 + 160039680 GCTCTCCTCTCAGCTTTCCTCTAGTACAGACCATGCTCTTGCTCCCAATGGACACTTACCAAGATGACAGACAGCACAAGATCTGTAGCCACTTCAGGAG--GACTGGATGGAGATGCTCTGCCACTCAGCCTTTTTATTCTGATCCTGGGCTCTG--CCCAACCTGTGAGACAGTGGCTGGGCATGGATGACCCTGACTCCTGACACCCATGTGGTTCTGTGACTGGAGATGACATG-AGTTTCTCACCAGCCTTCC-TTCATGGGTCTCAG
s HiC_scaffold_1 138198885 270 - 233722169 GCTCTGGTCTGAGCATACCTCTGAGA-AGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGA-CTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCCATTCACTGAGCTCAG

a score=29114
s chr3            92668485 1977 + 160039680 AACCCATGAGTTAATCTGCTACTGTTCCACACAGCCCCAGGTTTCTGAATCATCTTTGGAACAACTGAGCCTTGATTGGCAAAACTGATCTGTAAGACGCTTGGAGTCAAATGAT-CAAGAGTCTAGAGAAGATTGTGAGAGAAGCACTTTATTACTTTGTCCC------------TGAGAATACAGGTCCTTCAAAAGGGGAC----ATCTCACAAGACTACAGC--ATCTTT---GAGCCCAGGACACAGAGAGCAGC---AGGAGAGAAG---AGCAGGCCAGGGAGGGTCCACTGAACATGGCTTCCTCCTGAA-TGGAAGTCTAAAGT-GTTAGTTGCTCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcatccactgctgccaccactgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAG------GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAG---GGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGA----------------ATCATAATGCAAATTAGAACCAGGATCCTGGGGTCATCCTATCCACCTCTAAATACCAC----TGATAGTCATAGAAACCCCATAGTCAGTAATTTTATTTCTATCAAACCCCCAGATCTGGCCTACAGATCAAATCATCTTATAAGCTTTGACAGGAAAAAAACAAAACAAAACAGGTTCTTATTCTTTTTAAAAATACAATCTCCTATAACAGCCCCCAAGTTGAGAGATTTCATAGTCTGGAGCCATATTCAGAATAATTTCCTCCTCCAAGTAACAATTCTGAATGACATGTT--TTAAAATGCCATTGGACTTGATCTATGGCAATATGCCATATGGTGATTCGGATGAG-----ATTTTCACAGATTCCTCAAGCTTCTGAAACTGATTATAATAGTGAA-------------------TTTTTTTCAGAGAAGAAAATGGTGATTACTGATCAGTGTTCTAATGCCATTTCATAAAATACATATCTCATTCCTGAAAGCATGAACCAGGTCTGTTCCCTC------CTTTCCAGAAA---GTCTGAACTCAACTTAACATCC-CATGTTGACTGGTCATTGACATAAAAAGTCTTGTGCTGGTATGTCTTAAAAGTTCTGAGCAGCCTG-TGATGAAATTCCAA-TTCATGGCT-----------GCTCTGTCCTCCTTGTTAGTTTTTTT------------------CCTAAGTTATCCCAGGGCTGTGTTACCAGAAGCCCC----TCCTC------TTCCTCCTGAAGCCTACCAAGG-------TCAAAAGCTTTCTGT-------------ATTTCAGGATCCTTT-----CCTGAAGGGTTACTCCATGAAAGGGCA--------------TATTATTGTC-TTCTGAT---TCAAAATCAGAAGTACCCAGCTC-------CTTCTA-CTGCTTTCCATAGAATCAAAGTGTATTTCCCCACTACCTTCCCCCAACA----------CTTCCATCCCCCATCCCATGTTCTATGTTCGTCAGTTCTGTAGGCTATTGAGTCCTCCAGATCTCCTCTTAGCTTCCTTCTGGTACAGGCCATGCTCTTGTCCCCAGTGAACACTTACCAAGATGACAGGCAGTACAAGATCCTTGGGCACCTCAGGATGTGTATGAATGGAGATGCTCAGCCTCTCAGCCCTTTTATTCTGATCCTAGGCTCTGC-CCTAGCCTGTGAGACAGTGGCTGGGTATGACTGGCCCTGCCTTCTGACACTCACATGTTCTTGTGACTAGCAATGACCAAATGTTCCTTACCAGCCTTCC
s HiC_scaffold_1 138197168 1972 - 233722169 AAACCATAATAGCATCCATTACAGTACTA-ACAGACC--GGACTCTGACCCAAAAGGGGTGAGGCTGAACCCTGTTTGCTAACTCTGACCTGTGAGAATGATGCTGACAAAAGAAACAAGAGGCTGGTGAGGCTC-TGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAA-ACTGACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTG--GCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCAC---------------CGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCT---GCagcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCT------------------------------------CCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCACT-GAACACTGATTACTTCAGCTCAATTTCTGGTTCTCTCATTTTGAAAGTCAGGAAAATTAC----------CTCTGACTTTTTTTAATCCCTC-------------------------TTTGTAGTCTGT-----------------------TAGGTCCT--TTccttctg-------agttttattttaaagctc---aTTTGAGAAATT-----GTC--AAGCCAT-------ATAATCTCCAAACACAAGAA--------GAGTGAC-TGTTAATTAAAATCTCTAAGTGTAGGAGAAATGACACAGAAGTAAACTTTGTCTAGTGTTAGCATTCATTCTGACACATCACCAAGATTTCTGAAAATATCCATTACAGGGAGCAGTTTGGGTATGAAGcactctttaagaaaaaaaaaaaaagtatttcct--------tttggaagaaatttgaaaacat-----tttggttTTGAAGAATATGA---AGAACTGTAACTACAAAGCAACTTGCAGTAACTTGTCCCAAC-AAAGTTAACATATGAATGAAGAACG-----TAAAATCAAAAGAAGTGAATTTGTTGGCCT--AATGTTATCAGTGCATTATTGATCAGTTTCTAGTTTCCTGACTACTAATCCAAGGCTCTGTTCCTCCGAGCAATCTTCTTGTGAGGTCTAACCAGACCCACAGGTGTTCTTATGTCTTTCTTCCTCTAAGTACCAATGTCCTCAGcactttttttctaaaactagACATGGctatatttccaaaattatatttcCATCACATACTCATGTTAGGATAATCTAGTGGCCAGTATTTTTATTACCTGCAATCGCAAAAACATCATCAGCTACTATAATCAATTTGGTTTCTCTAAAACTGTAGCACACAGCTCTAAAAGTCTCCCAGTTGCTCTTGATCTTAC---------TCTACCTATCACCCTCTGCTTTCAAATTTTCTTGCTCCTCTCTTCCTTGCCAAGCACAAT-----TCAAGTTCCTGGGTTTTCGTATGCTCTGG------TCTGAGCATACCTCTGAGA-AGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGA-CTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCC

a score=25260
s chr3            92668547 710 + 160039680 AACTGAGCCTTGATTGGCAAAACTGATCTGTAAGACGCTTGGAGTCAAATGAT-CAAGAGTCTAGAGAAGAT-TGTGAGAGAAGCACTTTATTACTTTGTCCC------------TGAGAATACAGGTCCTTCAAAAGGG------GACATCTCACAAGACTA---CAGCATCTTTGAGCCCAGGACACAGAGAGCAGC---AGGAGAGAAG---AGCAGGCCAGGGAGGGTCCACTGAACATGGCTTCCTCCTGAA-TGGAAGTCTAAAGT-GTTAGTTGCTCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcatccactgctgccaccactgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAG------GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAG---GGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCT
s HiC_scaffold_1 138257852 689 - 233722169 AGTTGAACCCTGGCTGCTACCTCTGACCTGTGAGAATGATGCTGACAAAAGAAACAAGGGGCCGGTGAGGCTCTGCATGA----TactttattatttagaaatatagaaGAGGAGTGAGAA-ACTGACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTG--GCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCAC---------------CGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCT---GCagcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCT------------------------------------CCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTTTT

a score=22546
s chr3            92668793 480 + 160039680 GTTGCTCAGGTCAGCAGC---------------------------AGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcatccactgctgccaccactgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGAC------GGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGG---TGAATGCTCTG
s HiC_scaffold_1 138728647 438 - 233722169 GTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccac---------------caccactgctgcAGCAGc------cactgccaccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCT------------------CCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGG--------CAGGGGGAC--TTGGGTGGGCATTTGGGGGT---------------GCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATGAATGCGCTG

a score=14042
s chr3            92668795 464 + 160039680 TGCTCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcatccactgctgccaccactgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGC
s HiC_scaffold_1 138300154 374 - 233722169 TGGCCCGGCCATCAGTAGCCTCCAGA------GCAACAGCCAGAGCCACCAGACTGCTGTC-----TATTGCGGCAGT------TGCAATCACTACTGCAGGTACAGTG------ACTGCCACAGGTACAGGCAC------CACCACTGCCACTATTGC---AGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAG------------------------------------CAGTCCCCTGAACTGGAGCTACAGCAG---GTAGAG--------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGG---------------AGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=11084
s chr3            92668837 424 + 160039680 cagcagccactgctgccacca--ctgctgccacagcatccactgctgccaccactgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAG------GAAGACA--------CAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTG
s HiC_scaffold_1 138258136 392 - 233722169 CAGCAGCAACCAGAGCCCCCAGACTGCTG--------GCCACTACCACCGCCACTGCT---GCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAG------CAGCCAGAGCTCTGGTGTC---GGTGTCGGAGTCGA-----AGAGAT-------CTGCGAGGCCTGTGGTGGCT--CAG----GCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGG-----TTCTGCTG

a score=11409
s chr3            92668837 425 + 160039680 cagcagccactgctgccacca--ctgctgccacagcatccactgctgccaccactgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAG------GAAGACA--------CAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGG
s HiC_scaffold_1 138197513 393 - 233722169 CAGCAGCAACCAGAGCCCCCAGACTGCTG--------GCCACTACCACCGCCACTGCT---GCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAG------CAGCCAGAGCTCTGGTGTC---GGTGTCGGAGTCGA-----AGAGAT-------CTGCGAGGCCTGTGGTGGCT--CAG----GCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGG-----TTCTGCTGG

a score=8769
s chr3            92668888 367 + 160039680 ctgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAG-AGCTATGG-----CGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138398566 305 - 233722169 CTAGCTCAGCAACAGCACCCAGAGCCATGGCAGCAACCAGAGTCCCCACTG-GGCTCACACT--TAGAGCAGTTAGGAGCTTAGGGCCTGCAGTAGGAGCAGAGGA---TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAG-------------------------------------CCCCAGAGCTGAAGCC------------------------ACAGCAGGAAAATACTGGAGGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAGGGCACTTCAGTG---GGTATTTTGG-GTGCACTTGAGAGGGGACTGGCactgctgctgcttttgctgacAGGATGTCT

a score=11317
s chr3            92668888 1550 + 160039680 ctgcttccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCC-----AGAGCTAT------------GGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAG--------GAAGACA------CAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCAC------------TTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGC--------AAATTA-----GAACCAGGA---TCCTGGGGTCATCCTATCCACCTCTAAAT---------------ACCACTG----ATAGTCATAGAAACCCCATAGTCAGTAATTTT------ATTTCTATCAAACCCCCAGAT-------------------------------------------------CTGGCCTACAGATCAAATCATCTTAT-----AAGCTTTGACAGGAAAAAAA----CAA---------------AACAAAACAGGTTCTTATTCTTTTTAAAAATACAATCTCCTATAACAGCCCCCAAGTTGAGAGATTT-----------CATAGTCTGGAGCCATATTCAGAATAATTTCCTCCTCCAAGTAACAATTCTGAATGACATGTTTTAAAATGCCATTGGACTTGATCTATGGC-AATATGCCATATGGTGATTCGGATGAGATTTTCACAGATTCCTCAAGCTTCTGAAA---CTGATTATAATAGTGAATTTTTTTCAGAGAAGAAAATGGTGATTACTGATCAGTGTTCTAATGC------------CATTTCATAAAATAC---------------ATATCTCATTCCTGAAAGCATGAACCAGGTCTGTTCCCTCCTTTCCAGAAAGTCTGAACTCAACTTA--------ACATCCCATGTTGACTGGTCATTGACATAAA-------AAGTCTTGTGCTGGTATGTCTTAAAAGTTCTGAGCAGCCTGTGATGAAATTCCAATTCATGGCTGCTCTGTCCTCCTT--GTTAGTTTTTTTCCTAAGTTA--TCCCA-----GGGCTGTGTTACCAGAAGCCCC---------------------------------------TCCTCTTCCTCCTGAAGCCTACCAAGGTC-------AAAAGCTTTCT-----------------GTATTTCAGGATCCTTT--CCTGAAGGGTTACTCCATGAAAGGGCATATTATTGTCTTCTGATTCAAAATCAGAAGTACCCAGCTCCTT---------------CTACTGCTTTCCA----TAGAATCAAAGTGTATTTCCCCACTACCTTCCCCCAACACTTCCATCCCCCATCCCATGT----TCTATGTTCGTCAGTTCTGTAGGCTATTGAGTCCTCCA----GATCTCCTCTTAGCT-TCCTTCTGGTACAGGCCATGCTCTTGTCCCCAGTGAACACTTACCAAGATGACAGGCAGTACAAGATCCTTGGGCACCTCAGGATGTGTATGAATGGAGATGCTCAGCCTCTCAGCCCTTTTATTCTGATCCTAGGCTCTGCCCTAGCCTGTGAGACAGTGGCTGGGTATGACTGGCCCTGCCTTCTGACACTCACATGTTCTTGTGACTAGCAATGA
s HiC_scaffold_1 138154332 1723 - 233722169 CTACTTTAACAACAGCCTCCAG-------ACTGCTGCT--------TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAGGCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-------------------AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAG--TCAAATTGCGTCAGAAAAAGTCACAGGCCAACCAGcacactttttatcttttctgattcATTTCTAGCTGCTTCATTTTGATGAACTATTGAAGTATAGTCCTACATATT---TAATCAGTGAGTGTTGGAAAATTTCTAGCAATTCAGTAAATACTCTTGAACTGTCtctttttagtctcaatttcctttttaatcattATGCTTTTTTACAAAGCAGGGAATTTGGTGTGTAAAGC----ACATGAGAAAAATTGCCAAATTTAACATGAAGTTAAGAAGGCAGTTTCTTCTCCCTGTTACCTAGAAA----CCTAGAACTGTCT---AGTCTAGGAACATGGGAATGTAAACATATTCTTGAACAATGAGAAGGTTGAATTTGCTCTTGGAGTAACttcactgta-gtttttttctGCAAAACC-TTGGTCATGAACAGTTATAAATATTCT---TAGAGACTGGCTCGAGAG----ACCAACTCCCTTTGTTTATGAAGAACCTGA--AGAACAGTACTTTGTATGGAGACCTGCAAATTGAAGTCAGGTACCC-TGCTCTATTGAGCTGGAACTCTGCATTTC-TAGCATACTGAGGCCACATAATTATTTCTCCGTACTGAAATTCTCAACCTGTTGTGTCC--------------AGTTTATGACCATATTACCTTGAACACACCCAATCTCATCTGATCTCTGGAGTTAAGCAGGGTAAgacctg-gttagta---cttgga-----tatGAAGCCTGTTATA----TCCAA-----------------CTTCTTAAATTAATTTCTGGTTCCAGTTAAGATCCATAAATAGACGGCATTGCAAAAAACCCCAAAGGATTCtacatttatttctatctttaaagGTTATTATCATCTTTCCTAGGAAACATGACAGGCTTCTTGAAGATGATCATTCTAGACAATATGTTGACTGGGACTTCAGTCTCCTCTGACCTTAGAGCTCAGCCTGTGGTAGACCAATTCATT------TCAGCAGAAAGGAGAACCATGTAATTCTTTATGTTTCCAGTGGACCTACCACCTCCCACCCTTGGAA--ATTGTGCACTTCCTCCATTTGTCTTCCTGCTACTTCTCTCCCTTTGTCCATGTGGACTCCA--------GGTCCTGGGGATGACCCAGTCTCCCATCCTGTTCTTGTCTAGGGTAACCCTCCAGAAAAGCTCTTATTCCTGTACACAGTAGACACTTACCAAGGTCACAGGCAGTAC-AGGTCTGTGAACACCTCAGGAGGTGAGTGGATGGAAGTCTTCTGGCCCTGAGTCACTTTACACTTGCCTTGGGCTCTTCCC--ATTTATGAGACAAAACATGAATATG---GGACCCACATCCAGCCACTCACATATTC-TGTGACTGGTGATGA

a score=9121
s chr3            92668888 368 + 160039680 ctgcttccacagcagccaccactgccaccactgctgccacagcatcc-actgctgccac---cactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 138474310 297 - 233722169 CTATGTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAG------------------------GGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTC

a score=12747
s chr3            92668888 427 + 160039680 ctgcttccacagcagccacca---------ctgccaccactgctgccacagc----atccactgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGA----ATGCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCCT
s HiC_scaffold_1 138135515 366 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCTATAGCAGCTGGAGACCCCAGCAGCTG-----GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG-----------------------------------------------ACC-------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCA-AATACAAGTCAGGA-Cagaattct

a score=19023
s chr3            92668891 1598 + 160039680 cttccacagcagccaccact-----gccaccactgctgccacagcatccactgctgccaccact---------gctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCT---GCTGGTGA-ATGCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCCTGGGGTCATCCTATCCACCTCTAAATACCACTGATAGTCATAGAAACCCCATAGTCAGTAATTTTATTTCTATC-------------AAACCCCCAG----ATCTGGCCTAC--AGATCAAATCATCTTATAAGCTTTGACAGGAAAAAAACAAAACAAAACAGGTTCTTATTCTTTTTA------AAAATACAATCTCCTATAACAGCCCCCAAGTTGAGAGATTTCATAGTCTGGAGCCATATTCAG------AATAATTTCCTCCTCCAAGTAACAATTCTGAATGACATGTTTTAAAATGCCATTGGACTTGATCTATGGCAATATGCCATA----TGGTGATTCGGATGAGA-------------TTTTCACAGATTCCTCAAGCTTCTGAAACTGATTATAATAGTGAATTTTTTTCAGAGAAGAAAATGGT--GATTACTGATCAGTGTTCTAATGCCATTTCATAAAATACATATCTCATTCCTGAAAGCATGAACCAGGTCTGTTCCCTCCTT--TCCAGAAAGTCTGAACTCAACTTAACATCCCATGTTGACTGGTCATTGACATAAAAAGTCTTGTGCTGGTATGTCTTAAAAGTTCTGAGCAGCCTGTG-ATGAAATTCCAATTCATGGCTGCTCTGTCC---TCCTTGTTAGTTTTTTTCCTAAGTTATCCCAGGGCTGTGTTACCAGAAGCCCCTCCTCTTCCTCCTGAAGCCTACCAAGGTCAAAAGCTTTCTGTATTTCAGGATCCTTTCCTGAAGGGTTACTCCATGAAAGGGCATATTATTGTCTTCTGATTCAAAATCAGAAGTACCCAGCTCCTTCTACTGCTTTCCATAGAATCAAAGTGTATTTCCCCACTACCTTCCCCCAACACTTCCATCCCCCATCCCATGTTCTATGTTCGTCAGTTCTGTAGGCTATTGAGTCCTCCAGATCTCCTCTTAGCTTCCTTCTGGTACAGGCCATGCTCTTGTCCCCAGTGAACACTTACCAAGATGACAGGCAGTACAAGATCCTTGGGCACCTCAGGATGTGTATGAATGGAGATGCTCAGCCTCTCAGCCCTTTTATTCTGATCCTAGGCTCTGCCCTAGCCTGTGAGACAGTGGCTGGGTATGACTGGCCCTGCCTTCTGACACTCACATGTTCTTGTGACTAGCAATGACCAAATGTTCCTTACCAGCCTTCCTCCATGAGGTTCATGG--ATCCTTCATTC
s HiC_scaffold_1 138145831 1350 - 233722169 CTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCA------GCTGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCC------------------------------------CCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACAC------------TTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTA-AATTCAAGTTAGATGCAGGAAAC--AGGCCACCCTGCCCGCTCATTCTTTCTATTGA-----ATTTCCACTctgtgttt--tagttttagtttcattcaccgaaaaaaaaaaatccccagcacTATTTTCCTTACTAGAAAGAGATCATT-------ATTTGACAAATAGAAAATACTATCAAATA---------TCATTATAAAGTGTAAAGCACAGTTTTATG---------Ctaaatattgaaatt--attctATATAGTCTAATTCAGAACTGAAATAATTCctt------agtagaaa----aaataatatcctGTAA-----------ACATCTTCAATGATTCTACATCCCAGCATTTGCAATCAGAATGAAAAGGGATCGTGGCCATTTCTTGATCTGCTCACGCTATGAAGACAGAAGCTAAGAATAAATGAAGATCTGTGCAGAAGACCCTTGACTCACAGTCCAACTCTCTGATGT------------------TCTCAT------AAACAGAAAC----------TCTTCCTTGATCTAGAGATT---------ATTTCACTTCTCGtgttacttg--------------aaatattttcccAGACCCTTT------CTCATAGCCATGTGTGCATTAATCTCCAA---AAGATCTCCCTGATCCTATCCTTGTTTGCAGATCTCTGGAATTCTTTTAGAG------TATCATTCTCTCACCCTAAGCATTCTAAA--CAACCAAGG-------------ATCTGCCAGG-----TTCTCAAAG-------CCCTGGGAAGG-----------------------AATCAAGA--------CTCCTTCTGTT-CTTGAAATAGATCCATAGGCTTTTT--------------------GCTTCCAGCCACTCTCC-------------------TTCTCTGGACTGTGAA------------TCTCCTTAG------------AAAATCCCTACTCCTGTTCTCAGTGGACACTTACCGAAGT--CAAGGAGCTCAGAGTTTGTGAACACCTCAAGAGGTCAATGCATGGA-ATGCTGTACCCCTGAATCCTTTT------ATCTGAGGCTCCACCTCAGCAGGTGAGACAGAAGCAAAACATGAGAGAACCCAACTCCAGTCACCCATATGGTGCTGTAACTGGTGATGACTGAGTGCT---------CCTCCTTCCATGTTGCTCAGGGCAATTCTACACTC

a score=9525
s chr3            92668893 581 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG------ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGG----TCTG---GCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTG---CTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAACCAGGATCCTGGGGTCATCCTATCCACCTCTAAATACCACTGATAGTCATAGAAACCCCATAGTCAGTAATT---TTATTTCTATCAAACCCCCAGATCTGGCCTACAGATCAAATCATCTTA---TAAGCTTTGACAGGAAAAAAACAAAACAAAACAGGTTCTTATTCTTTTT
s HiC_scaffold_1 138377586 514 - 233722169 TCAGCAGCAGCC-TCAGAGccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTG---GGACACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGAAATTCTTTAAGTATTGAATGCTCAAATCATActtttcatatata---------------cataaaagACTAATATTAAATAATGCAATCATTTCAAT--AGCCTTCAA---TGTCCTG------AAATTTTCTTATAGTAAAACTGCatagagaaaaaac-aatcaaAGGTGTTTATTATCCTCTCT

a score=10109
s chr3            92668893 422 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatcca--ctgctgccaccactgct------acAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAA---TTAGAACCAGGATCCT
s HiC_scaffold_1 138439677 348 - 233722169 TCAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAG--ACCACTGTCGCCATCACAGGAGTCTGATCTCCAGAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAG---------CAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGC------------GGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAATTTT------accttgaaataa----aatgcaaatatttaaacCCAGAAACTT

a score=9752
s chr3            92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatcca--ctgctg----ccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138633185 296 - 233722169 TCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT

a score=9768
s chr3            92668893 435 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatcca--ctgctg----ccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT-----CTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAA----TTAGAACCAGGAT---CCTGGGGTCATCCTAT
s HiC_scaffold_1 138647043 381 - 233722169 TCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCGGGGAACCTGGAGAGAGCAAGGAAAAAGCTCATTGAAAAAGTTTTAGGCCAATGGTATCTCTGGGATCATTTTAT

a score=9283
s chr3            92668893 363 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatcca------ctgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTC
s HiC_scaffold_1 138613651 296 - 233722169 TCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGG------------AGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTC

a score=15792
s chr3            92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGGGGCA------------CTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138333235 344 - 233722169 TCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------------------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13512
s chr3            92668893 362 + 160039680 tccacagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138408314 320 - 233722169 TCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGG-----------AAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13022
s chr3            92668897 358 + 160039680 cagcagccaccactgccaccactgctgccacagcatccactgctgccaccactgctacAACATCCAGAGCTATGGCG---ATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138368923 316 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=22826
s chr3            92668902 1577 + 160039680 gccaccactgccaccactgctgccacagcatcc--actgctgccaccactgctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAAT----GCTCTGGGGCTGTGGAAGAATCATAATGCAAATTAGAAC-------CAGG--ATCCTGGGGTCATCCTATCCACCTCTAAATACCACTGATAGTCATAGAAACCCCATAGTCAGTAATTTTATTTCTA-----------------TCAAACCCCCAGATCTG--------------GCCTACAGATCAAATCATCTTATAAGCTTTGACA--GGAAAAAAACAAAACAAAACAGGTTCTTATTCTTTTTAAAAATACAATCTCCTATAACAGCCCCCAAGT--------------------TGAGAGATTTCATAGT-CTGGAGCCATATTCAGAATAA---TTTCCTCCTCCAAGTAACAATTCTGAATGACATGTTTTAAAATGCCATTGGACTTGATCTATGGCAATATGCCATATGGTGATTCGGATGAGATTTTCA-------CAGATTCCTCAAGCTTCTGAAACTGATTATAATAGTGAATTTTTT---TCAGAGAAGAAAATGGTGATTACTGATCAGTGTTCTAATGCCATTTCATAAAATACATATCTCATTCCTGAAAGCATGAACCAGGTCTGTTCCCTCCTTTCCAGAAAGTCTGAACTCAACTTAACATCCCATGTTGACTGGTCATTGACATAAAAAGTCTTGTGCTGGTATGTCTTAAAA-------GTTCTGAGCAGCCTGTGATG-------AAATTCCA-ATTCATGGCTGCTCTGTCCTCCTTG--------------TTAGTTT--TTTTCCTAAGTTATC----CCAGGGCTGTGTTACCAGAAGCCCCTCCTCTTCCTCCTGAAGCCTACCAAGGTCAAAAGCTTTCTGTATTTCAGGATCCTTTCCTGAAGGG-TTACTCCATGAAAGGGCATATTATTGTCTTCTGATTCAAAATCAGAAGTACCCAGCTCCTTCTACTGCTTTCCATAGAATCAAAGTGTATTTCCCCACTACCTTCCCCCAACACTTCCATCCCCCATCCCATGTTCTATGTTCGTCAGTTCTGTAGGCTATTGAGTCCTCC------AGATCTCCTCTTAGCTTCCTTCTGGTACAGGCCATGCTCTTGTCCCCAGTGAACACTTACCAAGATGACAGGCAGTACAAGATCCTTGGGCACCTCAGGATGTGTATGAATGGAGATGCTCAGCCTCTCAGCCCTTTTATTCTGATCCTAGGCTCTGCCCTAGCCTGTGAGACAGTGGCTGGGTATGACTGGCCCTGCCTTCTGACACTCACATGTTCTTGTGACTAGCAATGACCAAATGTTCCTTACCAGCCTTCCTCCATGAGGTTCATGGA
s HiC_scaffold_1 138180384 1527 - 233722169 GCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctg--------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCA------------------ACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCA-AATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGAT---TCTCTTAGCATCACTTG-AGCCATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATCTCTCTGAATTCTACATGCACATAGAA--GTTGCATAAGAATTGACATTGTTATACAACAATAGCAAACTGAGAC----------CAAAA----AATCTTATAGAACA-TATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAACATCTTGAGACTAAAATTGCCCAAtttcagggaa-----------aatattttttaaaagaaaaagcatcaTTTCTTCTTGTCATAACCTATAAGATGATC---------TTATCATGCAGGTCAGGGTTGCTAAGGATCTAGAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAA--ACTTATCAA-ATCCTGCAGA-----CGTGGGGCTTGAATCTCA----GGCAGTCCAGAGCTAGGTTCAGTCCA-----------------GAGCTCA----GATGTCCTCAGTTCACAGCTAACTGGGGT------TTATAAGTTAGCAGGTCTCAGACATGTGGTATCCTAATTAACTTGAGAAATACCAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCCCAGAAAAGCACTTGGTTTTCTCTTCCCTTGCTGTCAGGAACAGGGATGTATTCTCAGAGG----TATACTCCATCCTG------TCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTCTTGTCCTGATGAGCCTACTGCACTCAGAGAAAT-TTGTTCTCTCCAGAACCCaaggcata--tacatatatattttccctCGTTTCTTTACTGCTGCAGAGCCTTGTTTTGTTCCCATCTTTTAGT-CTTCC-----------------CTAAATTCTCCTCCTCTGAAAGGTAC----CCCTCTCAACTGAGGTCCCTTTCCAGCCACCTC----------TCCTACTGCTATTTTCAATGGAGACTTACCAGTGTCACAGG-AGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGTGCCCTTTTATTGGGCCCATGAGCTCTTCTTTAGC--ATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATGATATTGTGTAAAATGGTGAC----TGTTTCTCACCTATCTTCCTTCGTCACGCTTAGAGA

a score=11830
s chr3            92668950 225 + 160039680 gctacAACATCCAGAGCTATGGCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGG
s HiC_scaffold_1 138196665 206 - 233722169 GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGG

a score=7631
s chr3            92668971 340 + 160039680 GCGATGGCGACGGAGGGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGA--------GGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAAT-CATAATGCAAATTAGAACCAGGA
s HiC_scaffold_1 138417136 271 - 233722169 GCAGTGGTGTTGGAAGAGACTG---GGCCTGtggtggctggggcagcagtcACCACCCCCAGAACTA------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATGTG----GACACTTGGGATGCAATTGGGGCACTTTGGA-AGGCTTGGCA---TGATTGGTTTTACTGGTAGGACATCT----------------TGGAGTTCAGTGAGTACACCTAAAGTAAACTAGAACAATGA

a score=9169
s chr3            92668986 280 + 160039680 GGATCTGCGAGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACAC---TTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTG--GTGAA
s HiC_scaffold_1 138528501 252 - 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTG-------------------AGCAACAGCAGGA---AGAGCCTGGAGATCAGCAGG-----------GTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAGTGAA

a score=4301
s chr3            92669003 259 + 160039680 GGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGG
s HiC_scaffold_1 138470353 174 - 233722169 GGGGGCTCAGGCAGCAGCTGCCATCCCAAGAACTGCAT------------------------------------CAGCGTCCAGAACTGGAGCCATAG----------------------------------CAGGAAGGGCCTGGAGATGA---GCAGGGGG-----CTGGACAG------AGGGACAAACAGTT-GGAGAACACATGGGATGTGGTCTCCACTGCTGCTGGTACTAACAGCAGTACATCTCAGCTGG

a score=8310
s chr3            92669033 172 + 160039680 AGCTGCAGCAGCCACCAGAGCTGCAGCAGCCTCCAGA------GCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGG---------------AGGGCATTTTGGGGTCTGGCACTTGGGAGG
s HiC_scaffold_1 138154468 189 - 233722169 AGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAAT---ACACTTGGGAGG

a score=5367
s chr3            92669122 178 + 160039680 CAGCAGGAAGACAC-AGGGGGGCACTTGGGAGGACACTTAGGGGGGCATTTTGGAGGGCATTTTGGGGTCTGGCACTTGGGAGGACACTTGGGAGGGGGCTGACACTGCTGCTGGTTCTGCTGGCAGGACATCTCTGCTGGTGAATGCTCTGGGGCTGTGGAAGAATCATAATGCAAAT
s HiC_scaffold_1 138112522 154 - 233722169 CAGAAGGGGGACATGAAGAAGGAGCTTGTGGG--CACTGAGGGTGGCAATCAAGTAGACATTTTGGGG---------------GGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCT----TGGAGAATGTTCAAAGAGCCTAGAA----CATAATGCAAGT

a score=8827
s chr3            92680235 398 + 160039680 TCTCTCACAGCTCCTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggt
s HiC_scaffold_1 138457866 313 - 233722169 TCTCTCCAGGTTCCCTGACTGC----ATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGACAACCCCTTCTCAAATGCCCCTCC---------CCCAAGTGCC---CCCAGAAGAGcccagcactgtgcctgcctg---------------------ctACCTCCTCCTGTTCTGCCCCCACATCTGTGGGCTGCAGTGGCCTCA------------GCTGAAGCTCTGAG---------------------GGAGGCTGCTGCCCGTGCCACCACAGACATCACAGGTCTCATAAGTGCAGGCTGCGGAGTTCAGACTCCTGTGATAGTG------ACAGTGGTTG--------GCAGT-GTGGGGGCTCTGGCTGTGGTCACAACTCTGGGGAT

a score=8620
s chr3            92680248 343 + 160039680 CTGAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTC-------------ATCGCCA---TCGTCACAGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggc
s HiC_scaffold_1 138597773 273 - 233722169 CTGAACTCTCTTAA----GATATCCTgtcagcaaaagcagcagcagtGCCACTCCCCTCCCAAGTGCACCCCAAAATGTCC---------------ACTGCAGTGTCCAGCATCATGCCTTCCT---------------------CCAGTATTTTCCTGCTGT------------------------GGCTCCAGCTCTGGGGGCTGCTGTAGTTCTGTGGGTTGT------------------GGCTGCTGCCTGAGCCACAATAGAACTAGC----CTCTTCCAATCCTACTGCAGGCCCCAGGCTCCTAACTGCTCTGAATGTGAGCCCAGTGGGGGCTCTGGTTGCTGCCATGGC

a score=13161
s chr3            92680250 468 + 160039680 GAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCC--CCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcag-----tggctgctgtggcagcagtggtggcagcagtggctgctgtggcagcagtggtggtagcagtggctgctgtggcagcagtggtggcagcagtggctgctgtggca-gtagccagcagTCTGGAGACTGCTGCTGACAAGTGC
s HiC_scaffold_1 138583854 395 - 233722169 GAAAAGTCACAAC-AAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGC---------------ACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCT--------CTGGTCTCT---TCCTGCTGTGGCTCCAACTCAGGGCACTGCTGTGGCTC------------AAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGG---CGCAG-TCTCTTC--CACCACCGCCACA-----------------------GGCACCAGGCTCCTGACTGCTGTG-----AGTGTGAGCC-CAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTG-------AGCTGGACCAGGAAGAGCTCTGGAAGGGATCCAGTAGTCTAGAGCCTGATGCAGCCTGATGC

a score=12594
s chr3            92680250 367 + 160039680 GAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCC--CCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAG---------CTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 138506214 330 - 233722169 GAAAAGTCACAAC-AAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGC---------------ACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTC-----TTCT------TGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTC------------AAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAG----TGTCTTC--CACCACTGCCACAGGCAACAGGCTCCTGACTGCTGTG--AGTGTGAGCC-CACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTG

a score=13017
s chr3            92680250 367 + 160039680 GAACACCCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCC--CCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCAC--AGCTCTGGA-Tgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 138523022 330 - 233722169 GAAAAGTCACAAC-AAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCTAAGTGTCCACCCAAGTGC---------------ACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCGCCATGCCCTCCTCTGGTGTC-----TTCT------TGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTC------------AAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGATTGCTGTG--AGTGTGAGCC-CACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTG

a score=8048
s chr3            92680256 271 + 160039680 CCATAACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCC---TAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATC
s HiC_scaffold_1 138363556 249 - 233722169 CTACAACTGACAGGTCTTGCTAGTAGTATCAGCAGCAATGGCAGCCCCATTCCAAGTGA------------CCTCCAAAGTGCCTTACCCATAAATGTTTCCTCAAGTGATTCCCAGTTGCTTGCTCTCCTGAGCAGCCCCTTGCTTATCTCCA----------GGCTCTTC---CTGATGTTGCTCTAGCTACTGAGGCTGTAGTAGCTCTTGAGGATGAAACAACTCTTGGGATGGCAGCTGCTACCTGAGCCACCACAGGCTCTTCCGTTC

a score=9974
s chr3            92680261 370 + 160039680 ACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtgg----cagcagt-----ggct---gctgtggcagcagtggtggcagcagtggctgctg----tggcagcagtggtg
s HiC_scaffold_1 138696002 317 - 233722169 ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTTCC---------CCCAAATGCC---CCAAGAAGAgcccagcacagtgtctgcctg---------------------ctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGGC---TGCTGCTGAACTTAGCAGCGGTGATG

a score=9149
s chr3            92680261 353 + 160039680 ACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtggcagcagt------ggct---gctgtggcagcagtggtggcagcagtggctg
s HiC_scaffold_1 138486148 293 - 233722169 ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCTTCCCAAGTTTCCCTAC---------CCCAAGTGCC---CCCAGAAGAGCCCAGCACAatatctgcctg---------------------ctgcttcctCCTGCTCTGTTCCCAACTCTGGGGGCTGCAGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCCGCCTGAGCCACCACAGGCACCGCAGGTCCCACTAGTGCAGGCTGTGGAGATCAGACTCCTGT---GATGGTGACAGTGGTCTGCAGGACTCTGGCTGTGGACACAGCTCTGGGGGCTGCTGCTG

a score=9822
s chr3            92680261 359 + 160039680 ACTGAGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCCCCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCACAGCTCTGGATgctgtagcagtggtgg----cagcagt-----ggct---gctgtggcagcagtggtggcagcagtggctgctgtgg
s HiC_scaffold_1 138681948 305 - 233722169 ATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCCTCC---------CCCAAATGCC---CCAAGAAGAgcccagcacagtgtctgcctg---------------------ctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTC------------------------------CAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGAGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTACTGACTTGG

a score=12839
s chr3            92680265 352 + 160039680 AGATGTCCTGCCAGCAGAGCCAGCAGCAGTGCCAGCCTcctcccaagtgcacccccaagtgccctcccaagtgccAGACCCCGAAGTGTCCACCAAAATGCCCCCCTAAATGCCCTCCCAAGTGCCC--CCCTGTGTCTTCCTGCTGTAGCCTGGGTTCTGGGGGCTGCTGTGGCTCCAGCTCTGGTGGCTGCTGTAGCTCTGGAGGCTGCTGCAGCTCAGGGGGTGGAGGCTGCTGCTTGAGCCACCACAGACCCCGCAGATCTCTTCATCGCCATCGTCAC--AGCTCTGGATgctgtagcagtggtggcagcagtggctgctgtggcagcagtggtggcagcagtggctgctg
s HiC_scaffold_1 138572594 316 - 233722169 AGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGC---------------ACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCT--------CTGGTCTCTTC---CTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTC------------AAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCATCACCGACACAGGCACCAGGCTCCTGA--CTGTTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTG

a score=23214
s chr3            92685471 637 + 160039680 agaaaaCACAAGAGTCTTGTCTGGAATGCTTTTCAAGA--CTTTTTTAATTTGTAACAAAGATGCAAAG--AGGCATTGTCATCTCTGAAGTAGA--ATGCAGAAACTTTCCC--TGAAGATTTCAGCATCTCAAGGGGCAGGACAAGGAGGGAAG-TAGGAGACCAAAGAGCAGCGTGGCTGA----GTCTTCTGAGAATGTGTTCTTTCTGCACCACTTTTCTAGATTCTTTCTCATTGAGATCAGCAGCAGT---------CCCCAGACTGTTGgctactgccac------------agcagccactgctgccaccactgctgc------------------------cacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACG------AAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCT
s HiC_scaffold_1 138257898 643 - 233722169 AAAAGAAACAAGGG----GCCGGTGAGGCTCTGCATGATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATG-----ACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTC------------------------------------CCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCAT------------TTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTTTT

a score=25999
s chr3            92685471 1901 + 160039680 agaaaaCACAAGAGTCTTGTCTGGAATGCTTTTCAAG----ACTTTTTTAATTTGTAACAAAGATGCAAAG--AGGCATTGTCATCTCTGAAGTAGAATGCAGAAACTTTCCCT-------GAAGATTTCAGCATCTCAAGGGGCAGGACAAGGAGGGAAG-TAGGAGACCAAAGAGCAGCGTGGCTGA----GTCTTCTGAGAATGTGTTCTTTCTGCACCACTTTTCTAGATTCTTTCTCATTGAGATCAGCAGCAGT---------CCCCAGACTGTTGgctactgccac------------agcagccactgctgccaccactgctgc------------------------cacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACG------AAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTTAGAAC-CATGACCCTCCAGTCACCACACCCTGCATGCTTAGCATCCATGAAAACCATACAAACACCATCTCTAGTAGTTTCAGTT------CCAATACACTCATCTC--------CTCAGGTCCTCATTGTCATGTATTGGG-----AACATCAGAAACTCATGTAAG---TCAGGTAAGAACTGG------CATATGCTCTCC-AGCAGAGAATGATATATTAATGTTATCTTGAAAGGCTCTGAATCACAAACTTAAATGTGGCAGAGGAAACCT---TCCCGCACTTGTCTTCAGACTG-----------AAATCTCTGGATTAATGCATCGCTTCCAGGAG-------AAAAAAAATGCATTTTGAAACAAAGGCCAATCATTCTCTTCC---ATAACTTTCAAGCTTTTTTTTTTTT--ACCACACAAGTCACT---ACTGCAAAGAATCT---------GTGTTCCTATTGGATAAGTAAAGTGATTCCCTCAATGAAATGTCTGAAAGTTTTCATAGGAATATGGGTATTTCCTATAGACTAGGACCATGAGACCCTGC-TCTCTGACAAGCTTTCACATATGCTAAATTCC---CTACCTGTTCAACAGGATAGCACCGCCAGAGTGGGACTGGCAGTATTCCTGTCATTCCTGGAAGTGTGTGAACAATCCCAAACTTTTAACTCTGGGTTTTACAAG-TTCAAAGGAGCACCTACTACCCTATCCATC----------CTCCCTCTGCTGCTTCCTTTCAATGCTGGGCCAAGGATGAATTT-CAAAGTAGCCCTTTCAGGTTTGTTTAAGGTGCACAAACTGCTGTGCTTCAGGGTTCTGTTGTGACAG--------ATTCACTCTAAAGAGAAGGTAGCTCTCTGC----AGAGCCA--TTGGTTATGTGACTACTGT------CTACTC----ATTCTTCCCATTGGCGTTAAAGTGCCCTTTTTTTCTACCCATCA--TTCTGGTCTC-----CCCTAAGTCTTCTGT--------AAGCATAGCCCAAGGGCTCTGTGGCCCTGCTAGTCTCTCCTCCATCTCTCATCTCAGCTTCCCTCTGGTACAAGCCATGCTATTGCCCCCAGTGGATACTTACCAAGACGACAGGTAATTCAAGATCTGTGGACGCCTCAGGAG--AAGTGGATGGAGGTATGCTGTCCCTCAGTCCTTTTATACTGATCCTGGGCTCTGC-CCTGACCTGTGAGACAGTGACTGGGCATGGATGGCCCTGTCTCCTGACACCTTCCTTGTCTTGTGACTGGTGATGACCAAATATTCCTCACCAGGTTTGC--TCCATGAGTTCAGGG
s HiC_scaffold_1 138197273 1884 - 233722169 AAAAGAAACAAGAGGCTGGT----GAGGCTCTGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTA--------AATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTC------------------------------------CCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCAT------------TTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCT-TGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAG-CACTGAACACTGATTACTT--------------------CAGCTCAATTTCTGGTTCTCTCATTTTGAAAGTCAGGAAAATTACCTCTGACTTTTTTTAATCCCTCTTTGTAGTCTGTTAGGTCCTTTccttctgagttttattttaaagctcaTTTGAGAAATTGTCAAGCCATATAATCTCCAAACACAAGAAGA---GTGACTGTTAATT--AAAATCTCTAAGTGTAGGA--GAAATGACACAGAAGTAAACTTTGTCTAGTGTTAGCATTCATTCTGACACATCACCAAGATTTCTGAAAATATCCATTACAGGGAGCAGTTTGGGTATGAAGcactctttaagaaaaaaaaaaaaagtatttccttttggaagaaatttgaaaacattttggttTTGAAGAATATGAAGAACTGTAACTACAAAGCAACTTGCAGTAACTTGTCCC---------AACAAAGTTAACATATGAATGAAGAACGTAAAA----TCAAAAGAA---GTGAATTTGT--TGGCCTAATGTTATCAG----TGCATTATTGATCAGTTT---------CTAGTTTCCTGACTACTAATCCAA--------------------------GGCTCTGTTCC-----------------TCCGAGCAATCTT---CTTGTGA-----GGTCTAACCAGACCCACAGGTGTTCTTATGTCTTTCTTCCTCTAAGTACCAATGTCCTCAGcactttttttctaaaactagA-CATGGctatatttccaaaattatatttcCA--------------TCACATACTCATG----TTAGGATAATCTAGTGGCCAGTATTTTTATTACCTGCAATCGCAAAAACATCATCAGCTACTATAATCAATTTGGTTTCTCTAAAACTGTAGCACACAGCTCTAAAAGTCTCCCAGTTGCTCTTGA-------TCTTACTCTACCTATCACCCTCTGCTTTCAAATTTTCTTGCTCCTCTCTTCCTTGCCAAGCACAATTCAAG------------TTCCTGGGTTTTCGTATG-CTCTGGTCTGAGCATACCTCTGAGA-AGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGA-CTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCCATTCACTGAGCTCAGAG

a score=22024
s chr3            92685647 479 + 160039680 TCTTCTGAGAATG-TGTTCTTTCTGCACCACTTTTCTAGATTCTTTCTCAT---TGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccac------------agcagccactgctgccaccactgct------------------gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGAC------GAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTGG---TGAGTGCTCTGGA
s HiC_scaffold_1 138728625 462 - 233722169 TCTTCTGCTAATGCTGCTCCTTGTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAG------------------CTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGG--------CAGGGGG-----------------------------ACTTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATGAATGCGCTGAA

a score=18648
s chr3            92685664 526 + 160039680 CTTTCTGCACCACTTTTCTAGATTCTTTCTCA---TTGAGA-------TCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCT---GCTGGTGAG-TGCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTTAGAACCATGACCCTCCAGTCACCACACCCTGCATGCTTA
s HiC_scaffold_1 138145785 451 - 233722169 CCTTCTGTACTGCCCCTGAACATTGCTCTTCAAGATTAAGGATCCCCTTCAGCAACAG-CCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGCTGGAGCCCCT-------------CGAGGGCTG--------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCCC------------------------------------CCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGG------------------------GGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATGCAGG-------AAACAGGCCACCCTGCCCGCTCA

a score=9738
s chr3            92685671 474 + 160039680 CACCACTTTTCTAGAT---TCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTG---CTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGA
s HiC_scaffold_1 138377552 389 - 233722169 CATCCATTTTCTCAATAGCTCCTCCTGACCCAGCTCAGCAGCAG-CCTCAGAGccagggcagcagccagagcctCCACTGGGGTCAC-ACT-----CACAGCAGTCAGGAGCCTGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGACT----GGGCATGTGGTGGCTCAGGCAACAGCCACCACCC------------------------------------------------------CCAGAACTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTG----GATATTTTGGA-TGTACTTGGG---ACACTTTGGAAG-GCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGAA

a score=9104
s chr3            92685674 432 + 160039680 CACTTTTCTAG--ATTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAG-AGCTGTGG-----CGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138398541 330 - 233722169 CATTTTCCCAGTAGCTCCTCCTGGTCTAGCTCAGCAACAGCACCCAGA------------GCCATGGCAGCAACCAGAGTCCCCACTGGGCTCACACT---------------------TAGAGCAGTTAGGAGCTTAGGGCCTGCAGTAGGAGCAGAGGA---TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAGCC-------------------------------------CCAGAGCTGAAGCC------------------------ACAGCAGGAAAATACTGGAGGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAGGGCACTTCAGTG---GGTATTT-------------TGGGTGCACTTGAGAGGGGACTGGCactgctgctgcttttgctgacAGGATGTCT

a score=13385
s chr3            92685676 430 + 160039680 CTTTTCTAGA-TTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138408287 347 - 233722169 CCCTTCAAGAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCC------------------------------------------------------CCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=9584
s chr3            92685677 474 + 160039680 TTTTCTAGATTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTT
s HiC_scaffold_1 138474295 351 - 233722169 TCTTCAGAAATCTCTCT-----ATGTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAG----------TCCCAG----------ACTGCAGACCCTGACACCATCAC------AGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGG------------------------------------GGAGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAG-TGCAGTGTG----GGAACCTGGAGAGAGCAAGGAAAAAGCT

a score=12536
s chr3            92685678 428 + 160039680 TTTCTAGA-TTCTTTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138368894 345 - 233722169 TTTCAAGAGCTCTTCCTGGGCCAGCTTAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGACT----GGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAG---------------------CAGGAAGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=15756
s chr3            92685690 416 + 160039680 TTCTCATTGAGATCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138333223 356 - 233722169 TTCTGGCCCAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGTC-----------------------TGTGGTGGTAGGGA--AAGAG----GCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCC------------------------------ACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=15209
s chr3            92685699 411 + 160039680 AGATCAGCAGC---AGTCCCCAGACTGTTGgctactgccacag---cagccactgctgccaccactg---ctgccacag---cagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--gggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGC
s HiC_scaffold_1 138300177 351 - 233722169 AGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTG------------GAGCTACAGC---------AGGTAGAG--------------------------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGG---------------------------GACACTTAGGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=12590
s chr3            92685701 328 + 160039680 ATCAGCAGC-AGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttgg---agggcacttcggggt
s HiC_scaffold_1 138196597 292 - 233722169 ATCAGCAATTAGCCTCCAGATTGCTGGCTACTTCCTCATC---------------CACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGATGT

a score=12928
s chr3            92685702 454 + 160039680 TCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctg----ccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTGGTGA----GTGCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTTAGAAC
s HiC_scaffold_1 138135520 353 - 233722169 TCAACAGCAGCCTCCAGATTGTAGGCT------------GCCACCCTCTCTATAGCAGCTGGAGACCCCAGCAGCTG--------------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG--------ACC----------------------------------------------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGT------------AGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAGGAC

a score=29583
s chr3            92685702 1671 + 160039680 TCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTGGTGAGT----GCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTTAGAACCATGACCCTCCAGTCACC-----ACACCCTGCAT-GCTTAGCATCCATGAAAACCATACAAACACCATCTCTAGTAGTTTCAGTTCCAATACACT---CATCTCCTCAGGTCCTCATTGTCATGTATTGGGAACATCAGAAACTCATGTAAGTCAGGTAAGAACTGGCATATGCTCTCCAGCAG----AGAATGATATATTAATGTTATCTTGAAAGGCTCTGAATCACAAACTT--------AAATGTGGCAGAGGAAACCTTCCCGCACTTGTCTTCAGACTGAAATCTCTGGATTAATGCATCGCTTCCAGGAGAAAAAAAATGCATTTTGAAACAAAGGCCAATCATTCTCTTC----CATAACTTTCAAGCTTTTTTTTTTTTACCACACAAGTCACTACTGCAAAGAATCTGTGTTCCTATTGGATAAGTAAAGTGATTCCCTCAATGAAATGTCTG--AAAGTTTTCATAGGAATATGGGTATTTCCTATAGACTAGGACCATGAGACC--------------CTGCTCTCTGACAAGCTTTCACATATGCTAAATTCC---CTACCT--GTTCAACAGGATAGCACCGCCAGAGTGGGACTGGCAGTATTCCTGTCATTCCTGGAAGTGTGTGAACAATCCCAAACTTTTAAC--TCTGGGTTTTACAAGTTCAAAGGAGCACCTACTACCCTATCCATCCTCCCTCTGCTGCTTCCTTTCAATGCTGGGCCAAGGATGAATT-TCAAAG---TAGCCCTTTCAGGTTTGTTTAAGGTGCACAAACTGCTGTGCTTCAGGGTTCTGTTGTGACAGATTCACTCTA--AAGAGAAGGTAGCTCTCTGCAGAGCCATTGGTTATGTGACTACTGTCTACTCATTCTTCCCATTGGCGTTAAAGTGCCCTTTTTTTCTACCCATCATTCTGGTCTCCCCTAAGTCTTCTGTAAGCATAGCCCAAGGGCTCTGTGGCCCTGCTAGTCTCTCCTCCATCTCTCATCTCAGCTTCCCTCTGGTACAAGCCA-------TGCTATTGCCCCCAGTGGATACTTACCAAGACGACAGGTAATTCAAGATCTGTGGACGCCTCAGGAG--AAGTGGATGGAGGTATGCTGTCCCTCAGTCCTTTTATACTGATCCTGGGCTCTGCCCTGACCTGTGAGACAGTGACTGGGCATGGATGGCCCTGTCTCCTGACACCTTCCTTGTCTTGTGACTGGTGATGACCAAATATTCCTCACCAGGTTTGCTCCATGA-GTTCAGGGA
s HiC_scaffold_1 138180360 1551 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCC---------------CTCCACAGCAGCTggagcctcccgagggctg--------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGA------------------ACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGG------------GCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAG-ACCTTGACCA-CAGGTCACATTTGGGCACTCTGATTCTCTTAGCAT-CACTTGAGCCATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATCTCTC-TGAATTCTACATGCACATAGAAGTTGCATAAGAATTGACAT-TGTTATACAACAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaa--ttattgcAAACATCTTGAGACTAAAATTGC------------CCAAtttcagg-----gaaaatattttttaaaagaaaaagc-atcaTT-TCTTCTTGTCATAACCTATAAGA-----TGATCTTATCATGCAGGTCAGGGTTGCTAAGGATCTA-GAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAACTTATCAAA--------------TCCTGCAGACGTGGGGCTTGAATCTCAGGCAGTCCAGAGCTAGGTTCAGTCCAGAGCTCAGATGTCCTCAGTTCACAGCTAACTGGGGTTTATAAGTTAGCA-----GGTCTCAGACATGTGGTATCCTAATTAACTTGAGAAATAC-CAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCCCAGAAAAGCACTTGGTTTTCT-------CTTCCCTTGCTGT------------CAGGAACAGGGATGTATTCTCAGAGGTATACTCCATCC-----TGTCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTCTTGTCCTGATGAGCCTACTGCACTCAGAGAAATTTGTTCTCTCCAGAACCCaagg-catatacata-tatattttccctCGTTTCTTTACTGCTGCAGAG-CCTTGTTTTGTTCCCATC-TTTTAGTCTTCCCTAAATTCTC-------------------CTC-----CTCTGAAAGGTACCC------CTCTCAACTGAGGTCCCTTT-----CCAGCCACCTCTCCTACTGCTATTTTCAATGGAGACTTACCAGTGTCACAGG-AGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGTGCCCTTTTATTGGGCCCATGAGCTCTTCTTTAGC--ATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATGATATTGTGTAAAATGGTGAC----TGTTTCTCACCTATCTTCCTTCGTCACGCTTAGAGA

a score=13016
s chr3            92685726 1626 + 160039680 gctactgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccacc-----actg-ctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAG--------GAAGACA------CAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTTAGAACCATGACCCTCCAGTCACCACACCCTGCATGCTTAGCATCCATGAAAACCATACAAACACCATCTCTAGTAGTTTCAGTTCCAATACACTCATCTCCTCAGGTCCT-CATTGTCATGTATTGGGAACATCAGAAACTCATGTAAGTCAGGTAA-------GAACTGGC------------------------------ATATGCTCTCC-----AGCAGAGAA--TGATATATTAATGTTATCTTGAAAGGCTCTGAATCACAAACTTAA-ATGTGGCAGAGGAAAC-----CTTCCCGCACTTGTCTTCAGACT--GAAATCTCTGGATTAATGCATCGCTTCCAGGAGAAAAAAAATGCATTTTGAAACA-----AAGGCCAATCATTCTCTTCCATAACTTTCAAGCTTTTTTTTTTTTACCACACA--AGTCACT-ACTGCAAAGAATCTGTGTTCCTATTGGATAAGTAAAGTGATTCCC----TCAATGAAATGTCTGAA-------AGTTTTCATAGGAATATGGGTATT----------------TCCTATAGACTAGGACCATGAGACCCTGC-TCTCTGACAAGCT---TTCACATA------------TGCT-AAATTCCCTACCTGTT------------------------------------CAACAGGATAGCACCGCCAGAGTGGGACTGGCAGTATTCCTGTCATTCCTGGAAGTGTGTGAA-----CAATCCCAAACTT------TTAACTCTGGGTTTTA--CAAGTTCAA-----AGGAGCACCTACTA-----CCCTATCCATCCTCCCTCTGCTGCTTCCTTTCAATGCTGGGCCAAGGATGAATTTCAAAGTAGCCCTTTCAGGTTTGTTTAAGGTGC---------ACAAACTGCT-----GTGCTTCAGGGTTCTGT-----------------TGTGACAGATTCACTC---TAAAGAGAAGGTAGCTCTCTGCAGAGCCATTGGTTATGTGACTACTG--TCTACTCATTCTTCCCATTGGCGTTAAAGTGCCCTTTTTTTCTACCCATCATTCTGGT-CTCCCCTAAGTCTTCTGTAAGCATAGCCCAAGGGCTCTGTGGCCCTGCTAGTCTCTCCTCCATCTCTCATCTCAGCT-TCCCTCTGGTACAAGCCATGCTATTGCCCCCAGTGGATACTTACCAAGACGACAGGTAATTCAAGATCTGTGGACGCCTCAGGAG--AAGTGGATGGAGGTATGCTGTCCCTCAGTCCTTTTATACTGATCCTGGGCTCTGCCCTGACCTGTGAGACAGTGACTGGGCATGGATGGCCCTGTCTCCTGACACCTTCCTTGTCTTGTGACTGGTGATGACCAAATATTCCTCACCAGG
s HiC_scaffold_1 138154331 1743 - 233722169 GCTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-------GCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCAC-------------------TCCAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTG--AGACAGTCAAATTGCGTCAGAAAAAGTCACAGGCCAACCAGcacacttt------ttatcttttctga-------------ttcATTTCTAGCTGCTTCA-TTTTGATGAACTATTGAAGTATAGTCCTACATATTTAATCAGTGAGTGTTGGAAAATTTCTAGCAATTCAGTAAATACTCTTGAACTGTCtctttttagtctcaatttcctttttaatcattATGCTTTTTTACAAAGCAGGGAATTTGGTGTGTAAAGCACATGAGAAAA-------ATTGCCAAATTTAACATGAAGTTAAGAAGGCAGTTTCTTCTCCCTGTTACCTAGAAACCTAGAACTGTCTAGTCTAGGA--------ACATGGGAATGTAAACATATTCTTGAACAATGAGAAGGTTGAATTTGCTCTTGGAGTAACttcactgtagtttttttctGCAAAACCTTGGTCATGAACAGTTATAAATATTCTTAGAGACTGGCTCGAGAGACCAACTCCCTTTGTTTATGAAGAACCTGAAGAACAGTACTTTGTATGGAGACCTGCAAATTGAAGTCAGGTACCCTGCTCTATTGAGCTGGA-------ACTCTGCATTTCTAGCATACTGAGGCCACATAATTATTTCTCCGTACTGAAATTCTCAACCTGTTGTGTCCAGTTTATGACCATATTACCTTGAACACACCCAATCTCATCTGATCTCTGGAGTTAAGCAGGGTAAgacctggttagtacttgga---tatGAAGCCTGTTATATCCAACTTCTTAAATTAATTTCTGGTTCCAGTTAAGATCCATAAATAGACGGCATTGCAAAAAACCCCAAAGGATTCtacatttatttctatctttaaa-----gGTTATTATCATCTTTCCTAGGAAACATGACAGGCTTCTTGAAGATGATCATTCTAGACAATATGTTGACTGGGACTTCAGTCTCCTCTGACCTTAGAGCTCAGCCTGTGGTAGACCAATTCATTTCAGCAGAAAGGAGAACCATGTA-----ATTCTTTATGTTTCCAGTGGACCTACCACCTCCCACCCTTGG----AAATTGTGCACTTCCTCCATTTGTCTTCCTGCTACTTCTCT---CCCTTTGTCCATGTGGACTCCAGGTCCTGGGGATGACCCAGTCTCCCATCCTGTTCTTGTCTAGGGTAACCCTCCAGAAAAGCTCTTATTCCTGTACACAGTAGACACTTACCAAGGTCACAGGCAGTAC-AGGTCTGTGAACACCTCAGGAGGTGAGTGGATGGAAGTCTTCTGGCCCTGAGTCACTTTACACTTGCCTTGGGCTCTTCCC--ATTTATGAGACAAAACATGAATATG---GGACCCACATCCAGCCA-CTCACATATTCTGTGACTGGTGATGAGTTGCATTCCTTCACCTGG

a score=8497
s chr3            92685766 400 + 160039680 cagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACG-------AAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGgggcatttgggaggacacttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTG---CTGGTGAGTGCTCTGGAGCTGTAGGAGAGTAAAGGAGAAGTTAGAACCATGACCCTC
s HiC_scaffold_1 138417081 331 - 233722169 CAGCAGCCAAGTCCCCACTGGACTCACACTCACAGTAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACT----GGGCCTGtggtggctggggcagcagtcACCACCCCCAGAACTA------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATGTG----GACACTTGGGA-TGCAATTGGG---GCACTTTGGAAG-GCTTGGCA---TGATTGGTTTTACTGGTAGGACATCTTGGAGTTCAGTGAGTACACC---------------TAAAG--TAAACTAGAACAATGACATTC

a score=3878
s chr3            92685836 63 + 160039680 GCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGC
s HiC_scaffold_1 138470347 63 - 233722169 GCGTAGGGGGGCTCAGGCAGCAGCTGCCATCCCAAGAACTGCATCAGCGTCCAGAACTGGAGC

a score=8257
s chr3            92685836 276 + 160039680 GCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggaca---cttaggggggcattttggagggcacttcggggtctggcacttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCTGCTG
s HiC_scaffold_1 138528512 234 - 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTG-AGCAAC------AGCAGGA---------------AGAGCCTGGAGATCAGCA-----------GGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGG------------CCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTG

a score=8917
s chr3            92685869 186 + 160039680 CAGAGCTGCAGCAGCCTCCAGAACTGCAGCAGCC------ACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcatttgggaggacacttaggggggcattttgg---agggcacttcggggtctg-gcacttgggagggcacttggggg
s HiC_scaffold_1 138154465 191 - 233722169 CAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAG

a score=46255
s chr3            92689304 1878 + 160039680 GAGCAGCCAGATCAGGGACAGAGTCTCAGCCTcgccgccaccgctgctgccgccgccgccCAGAGACTGCCGAGCCGCGTCCGTGTGCCGCCACCCACTCCGGACACAGAATATCCAGTTATGGATAAAAATGAGCTGGTGCAGAAGGCCAAGCTGGCCGAGCAGGCAGAGCGATATGATGACATGGCAGCCTGCATGAAGTCTGTCACTGAGCAGGGAGCTGAGCTGTCGAATGAGGAGAGAAACCTTCTCTCTGTTGCTTATAAAAAACGTTGTAGGAGCCCGTAGGTCATCGTGGAGGGTCGTCTCAAGTATTGAGCAGAAGACGGAAGGTGCTGAGAAAAAGCAGCAGATGGCTCGAGAATACAGAGAGAAGATCGAGACGGAGCTGCGTGACATCTGCAA-CGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCCCAATGCTTCGCAACCAGAAAGCAAAGTCTTCTATTTGAAAATGAAGGGTGACTACTACCGTTACTTGGCCGAGGTTGCTGCTGGTGATGACAAGAAAGGAATTGTGGACCAGTCACAGCAAGCATACCAAGAAGCATTTGAAATCAGCAAAAAGGAGATGCAGCCGACACACCCCATCAGACTGGGTCT-GGCCCTCAACTTCTCTGTGTTCTATTACGAGATCCTGAACTCCCCAGAGAAAGCCTGCTCTCTTGCAAAAACAGCTTTCGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCGTACAAAGACAGCACGCTAATAATGCAGTTACTGAGAGACAACTTAACATTGTGGACATCGGATACCCAAGGAGATGAAGCAGAAGCAGGAGAAGGAGGGGAAAATTAACCGGCCTTCCAACCTTTGTCTGCCTCATTCTAAAATTTACACAGTAGACCATTTGTCATCCATGCTGTCCCACAGATAGTTTTTTTGTTTACGATTTATGACAGGTTTATGTTACTTCTATTTGAATTTCTATATTTCCCATGTGG-TTTTATGTTTTAATATTAGGGGAGTAGAGCCAGTTAAC-TTTAGGGAGTTACTCATTTTCATCTTGAGGTGGCCAATATG-GGATGTGGAATTTTTACATGAGTTACACATGTTTGGCATAGTACTTTTGGTACA--TTGTGGCTTCAGAAGGGCCA------------GTGTTAAAAC--------TGCTTCCATGTCTAAGCAAAGAAAACTGCCTACATATTGGTGTGTGCTGGCGGGGAATAATCAGGATAATGGGTTCCAGTCATGAGTGTAG------TCTTTGTGGGTACTGTAAGGCCTGGAGCACTTGTGAGGCTGTGACACAAACA-CCCTGTGGAT----GCACGCTAGGATCGTGTGTGTCTGCG------------------TGCACACTCTTGACCACAGCTCCA-GAAGATGTCTCTAGACAAAGTCGTGACCCAATTTACTCTGGTAAGGG---CAGAAACGGTTCACATTCCATTATT-TGTAAAGTTACCTGCTGTTTGCTTTCATTATTTTTGCTACACATTTTATTTGTATTTAAATGTTTTAGGcaatctaagaacaa-atgtaaaagtaaagatgcagtaaaaacgagttgcttggtgtgcccggctccatacgtatcaagcacagcggtaaacaaaatcccatgtatttaactttttctttctttCttttttttttttttaagttttttgttttgttttgtttttgcttttgtGATTTTttttttctttttgatacttgcctaacatgcatgtgctgtaaaaatagttaacagggaaataacttgagatgacggctagctttgttttaatgtcttaagaaattttcatgaacaatccaagcataattgttaagaac---acatgtat---taaagttcatgtaagtggaataaaagttttatgaatgGAAAAAAA
s HiC_scaffold_1 208112195 1757 - 233722169 gAGCAGTTAAATCAAGGTAAGATTTTTAGCTT------------TACTGCTGCCTTTGTGCAGAGACTACTGAGCCCTATTCTTTT------ATCAATTCC-----CAGAATGTCCA----TGG------------TGGTGGGGAAGGCACGTAAGGGTGGATAG---------TATGGTCAGATGATAGACTGGTTGACAATTATAATTGAATAAGCAGCTAAA-TATCTAATGAT---ACAAGCCTTTTCTCAATTGCTTACAAAAA-CATTGCAGAGTCCTGTATGCCAACTTAGAGAGTCAGCTCAAGTATTGGGCAAACGATGAAATATGCTGAGAAATA-CAGCAGGTGGCTTTGGAAGAC-GAGAGAGAATAGAAACTGATCTGAGAGATATCTGCAAATGATGTGCTGTCTCCC--AGAAGAGTTATTGATCCCCAGAGTTtcacaaacaaatagaaaaatcttgTATTTGAGAATGA-----GACCGCTACTGTGATGTGGCTCAGATTACTTCTGGTGATGATATGAAAGGGACTGTGGATTAGCCCCAGTGAGCATACCAAGAAGCTCTGGAGATCAG-AAAAAGCAACTTCATCTGACACA-TCTGTCAGACTGAGCCTGGGATGTCAA---TTCTGAGCTCAATTTTGATATTATGAGCAAGTTGGAGAAAG-CTGATTTCTTGCAAAGATAGCTTTTGATGAAGTCACTGTTGACCTCAATACAGTAAGTAAATGGTCATagaaagatggcagagtggtaactAAACTACTGTGAAACAATTTGGCACTTTGTATGTTGGAGATGTAC--AAATGAAGCTGAAGAATAAGATG--GGGAAAAATTAGCCAGTCTTCCAAATTTTGTATA--TTACTCTAGAATTTTCTCAGTGAAATAGCTGTTATCTGTCTTCCCCCTCAAA-----TCTTAGTTTATGATTTATGAGaggtatattttactttt-tttgaatttccattttat---tgtggattttattttttaatattaaaggaaCAGAGTCAGTTAATATGTACAGATTTACCTG-CCTCATCTTGAGTTGG-AAATATGTGgttgtggaatttttatacaagCTATAAATGTTTGTTACACTATTTTTTCTATAGTGTGTGGCTTCAAAACAGTGACATATAGTATTTTTGCTAAAGTGCAATCTGTGGTTGTATGTCt----aaataaaattcctttttttct--------ctggcGTG---TGATAAAAGTAACTGGTTTCAGTCACAGACTTAGTTCCACTCATTGCATATACATGATGGTTTGCAA-----GTGA-----TGATACAGATATCCCCATGGGTACCCACACATATAAACCATGTGTGTCTGAGGAATTCACAGTTTCAATTCACATATCTTTGACAAGAGCTGCATAAAGTTTCCTTCAGACAAATTTACAATATAGCTT-CATTGGAAGGAAATTCAGAAACAATTcacattaaattattatttaaaattatct--tatttgttgtc-tta-ttttgacaTTAATTTTGCTTGTGCTTAAATATTATCAACaacatgagaaaaatatgtacaaataaagatg-aattaaaatgaatgatTTGATTT---CTGTCCCATGGgga--gagtaaaaca------aaaatccTGTTTGTTCAAC----------------------TTTAGTGAGAT---------------Ctttcatttttgtgaatttttt----------atacTTACCTAATATACATGCACTATAAAGGCTGT--AAGGAAAAATACTTAGAGACAGTGCctcatttta-tttaatgtctTATGAAATTTTCAGGAACAGTCCAAATGCAATAGTTAAGAATGTAACAAGTAGACATACAGTTAATACAA------------TTTTATGAGTGGAAACAAA

a score=60234
s chr3            92689321 998 + 160039680 ACAGAGTCTCAGCCTcgccgccaccgctgctgccgccgccgccCAGAGACTGCCGAGC-----------------CGCGTCCGTGTGCCGCCACCCACTCCGGACACAGAATATCCAGTTATGGATAAAAATGAGCTGGTGCAGAAGGCCAAGCTGGCCGAGCAGGCAGAGCGATATGATGACATGGCAGCCTGCATGAAGTCTGTCACTGAGCAGGGAGCTGAGCTGTCGAATGAGGAGAGAAACCTTCTCTCTGTTGCTTATAAAAAACGTTGTAGGAGCCCGTAGGTCATCGTGGAGGGTCGTCTCAAGTATTGAGCAGAAGACGGAAGGTGCTGAGAAAAAGCAGCAGATGGCTCGAGAATACAGAGAGAAGATCGAGACGGAGCTGCGTGACATCTGCAACGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCCCAATGCTTCGCAACCAGAAAGCAAAGTCTTCTATTTGAAAATGAAGGGTGACTACTACCGTTACTTGGCCGAGGTTGCTGCTGGTGATGACAAGAAAGGAATTGTGGACCAGTCACAGCAAGCATACCAAGAAGCATTTGAAATCAGCAAAAAGGAGATGCAGCCGACACACCCCATCAGACTGGGTCTGGCCCTCAACTTCTCTGTGTTCTATTACGAGATCCTGAACTCCCCAGAGAAAGCCTGCTCTCTTGCAAAAACAGCTTTCGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCGTACAAAGACAGCACGCTAATAATGCAGTTACTGAGAGACAACTTAACATTGTGGACATCGGATACCCAAGGAGATGAAGCAGAAGCAGGAGAAGGAGGGGAAAATTAACCGGCCTTCCAACCTTTGTCTGCCTCATTCTAAAATTTACACAGTAGACCATTTGTCATCCATGCTGTCCCACAGATAGTTTTTTTGTTTACGATTTATGACAGGTTTATGTTACTTCTATTTGAATTTCTATATTTCCCATGTGGTTTTATGTTT
s HiC_scaffold_1 165851960 989 - 233722169 ACAGAATCTAAGCCTCAC------------TACTGCCACCCCCCAGAAACTGCTTCACGCATTCATCCGTCTCCACCCATCCGTccatctccacccagccaggACACAGAACATTTAAGCATGGATAAAAATGAGCTGGTGCACATAGCCAAACTGGCCAAGCAGGCC-----ATATAATGCCATGGCAGCCCATGTGAAGTCTGTATCTGAGCAAGGCACTGGATTATCTAATGAGGAGAGGAATCTTCTCTGTGTT--CTTCAAAAAATGTTACAGGAGCCTATAGTTCATCTTGGAAGGTTGTCTCAAGCACTGAGCAAAAGATGGAAGGTGCTGAGACAGGGCAGCAGATGGCTCaagaacacagagagaaaactgaggctgagCTAAGGCTTACCTGCAACAATGTACTATCTCTTTTGGAAAAGTTCTTGATCCCCAGTGCTTCACAAGCAGAGAGca--gcattttatttgaaaacgAAAGGAGACTACTACTGTTA-TTGTCTGGGGTTGCTGCTGGTGATGACCAGAAAGGGATTGTGGGGCAGTCACAACAAAGATACCAA-AAGTTTTTGAAATCAGGATAAAGGAAATGCAACCAATGCATCCTATCAGATTGAGTCTGACCCTCAACTACTCTATGTTTTATTATGAGATTCTGAACTCTCCAGTTAAAACCCATTCTCTAGCAAATGTAGCTTTTGATGAAGCCATTGTTGAGCTTGATACATTTAGTGAGGAGTCATACAAGGACTGTACACTAATAACACAATTACTGAGAGACAACTAGACATTGTGGACATCAGCTTCCCAAGAAgatgaagctgaagcagg---aggagaggaagatTAACTGGCCTTTCAACTTTCACCTGCCTCGTTCTAAAATTTACACAGTAGAACATTTGTCATCCATGCTGTCCCacaaatagtttttttgtttatGGTTTATGACAGGTTTGCActatttttgtttgaatttctaTGTCTCCCAAGtggttttgtgttt

a score=46888
s chr3            92689385 1735 + 160039680 CGTGTGCCGCCACCCACTCCGGACACAGAATATCCAGTTATGGATAAAAATGAGCTGGTGCAGAAGGCCAAGCTGGCCGAGCAGGCAGAGC-GATATGATGACATGGCAGCCTGCATGAAGTCTGTCACTGAGCAGGGAGCTGAGCTGTCGAATGAGGAGAGAAACCTTCTCTCTGTTGCTTATAAAAAACGTTGTAGGAGCCCGTAGGTCATCGTGGAGGGTCGTCTCAAGTATTGAGCAGAAGACGGAAGGTGCTGAGA-AAAAGCAGCAGATGGCTCGAGAATACAGAGAGAAGATCGAGACGGAGCTGCGTGACATCTGCAACGATGTACTGTCTCTTTTGGAAAAGTTCTTGATCCCCAATGCTTCGCAACCAGAAAGCAAAGTCTTCTATTTGAAAATGAAGGGTGACTACTACCGTTACTTGGCCGAGGTTGCTGCTGGTGATGACAAGAAAGGAATTGTGGACCAGTCACAGCAAGCATACCAAGAAGCATTTGAAATCAGCAAAAAGGAGATGCAGCCGACACACCCCATCAGACTGGGTCTGGCCCTCAACTTCTCTGTGTTCTATTACGAGATCCTGAACTCCCCAGAGAAAGCCTGCTCTCTTGCAAAAACAGCTTTCGATGAAGCCATTGCTGAACTTGATACATTAAGTGAAGAGTCGTACAAAGACAGCACGCTAATAATGCAGTTACTGAGAGACAACTTAACATTGTGGACATCGGATACCCAAGGAGATGAAGCAGAAGCAGGAGAAGGAGGGGAAAATTAACCGGCCTTCCAACCTTTGTCTGCCTCATTCTAAAATTTACACAGTAGACCATTTGTCATCCATGCTGTCCCACAGATAGTTTTTTTGTTTACGATTTATGACAGGTTTATGTTACTTCTATTTGAATTTCTATATTTCCCATGTGGTTTTATGTTTTAATATTAGGGGAGTAGAGCCAGTTAACTTTAGGGAGTTACTCATTTTCATCTTGAGGTGGCCAATATG-GGATGTGGAATTTTTACATGAGTTACACATGTTTGGCATAGTACTTTTGGTACATTGTGGCTTCAGAAGGGCCAGTGTTAAAACTGCTTCCATGTCTAAGCAAAGAAAACTGCCTACATATTGGTGTGTGCTGGCGGGGAATAATCAGGATAATGGGTTCCAGTCATGAGTGTAGTCTTTGTGGGTACTGTAAGGCCTGGAGCACTTGTGAGGCTGTGACACAAA-CACCCTGTGGATGCACGC-------TAGGATCGTGTGTGTCTG------------------CGTGCACACTCTTGACCACAGCTCCAG-AAGATGTCTCTAGACAAAGTCGTGACCCAATTT------ACTCT-------------GGTAAGGGCAGAAACGGTTCACATTCCATTATTTGTAAAGTTACCTGCTGTTTGCTTTCATTATTTTTGCTACACATTTTATT-TGTATTTAAATGTTTTAGGcaatctaagaacaaatgtaaaagtaaagatgcagtaaaaacgagttgcttggtgtgcccggctccatacgtatcaagcacagcggtaaacaaaatc-----ccatgtatttaactttttctttctttCttttttttttttttaagttttttgttttgttttgtttttgcttttgtGATTTTttttttctttttgatacttgcctaacatgcatgtgctgtaaaaatagttaacagggaaataacttgagatgacggctagctttgttttaatgtcttaagaaattttcatgaacaatccaagcataatt
s HiC_scaffold_1 144690201 1611 - 233722169 CATTTGCTGACACCTACTTAAAATGCAAAACCCACA-TCACTGATAAAAATGAGCTTTTATGAAAGCCCAAACTGACCCAGCAAGCTGAGCTAATAAGATGACATGGCAGCCTGCA---AGTCTATAA-TGAGCAAGGAGTTGGATAATCCAATAAGAAAAGGAATATTCCCTCAGTTACTTACAAAAA-TGCTGTAGGAAGTCATAGGTCATCTTAGAGACTCATCTCGAGTACTAAGCTAAAGATAGAAGACACAGAGGCAAAAACAACAAATGGCTGACATCTACAGATAGAAAATTGGGGCCAATCTAAAGTTTATCTACAATGATATACTACTTGTTCTGGAAAAGTTCTTGG-CCCTaatgttttaaaagcaaagagcAA-TTCTTCTATT-GAAAATAAAGGGAAACAACTTAAATTACTTGGCTGAGGTTGCTAC-ACTGATGCTGAGAATGTGATTGGGCATTGGTCACAATAATCATACCTAGAAGCTTTTCAGATCAGCAAAAATGAAATGCGACCAACTCAGTCTATTTGATTGAGCCTGGCCCTTagcttttctgtgttttgttgtgAGATTCTGAACTCTCTCAAAAAATTCTGCTGTCTTGCAAAGGTAATTTTTGAAGGACCTGTGGATGAACttcatattttaaac-aaaaataatatgaagaTAGCATTCTGTGAATGCAAACACTGAGAGATAACTTGACATTGTAGATATTAGACACAC---------AAGCAGAagca-gaaaagggagagaaaattaa----tctttcaatttttgtctgCCTGCTTCTCAAATCCACACAG-----CATTTGTCATCCATTTTAtcccacaaaatatt------tttatgatttgcaacagattta--ttacttttatttgattttc--tctttccaaggtagtttatgtttttaatattagAGGAAT--AGTCGGTTAACATATGggtagttttcatttttgcttttgaagcACTTACATGAGGCTGTGGGATTTTTGTGTAACTT----ATATTTGGCATAGTGTGATTGGTACATTGTAACTTCA-----------GTAAAGACT-------------------------TGTTTACATAGAGATTTATTCTTGTG----------AGGCTAATGTGTTCTTGTCACAGCTACAATTATtgtgg---ctgaaaagtctgggctG-----AAAGCTATGTCAGAAATTGATCTTTCAATGAACATTTGTTTGTTGAGTTGTATGTATTTATAATACACATAACCTCATTGTGTGTACCTTAGACTATAGCTGTGGAAAggttactttaaagaaaattgttaTCTAATGTGTAACAATTGTAATGTATAAAGAAGATGAAGAGAGAAAT-GTTCCCAGCCCCTTACTTGTAAAATTACCTGCTgcttatttttactgttttta----acatGTGGGTATGAATTTAAA-GTTTTAGATATTCTCAGAACAAATTCACAAGTAAAGATGAGGTAACAAAAAAGTGCCTGATTTATGTGCCTTTATATATAATAATGCCtg-agtaaaaagaaacagaaaaaatgtattaa----------------------ctcattttagaatttttgttt-------------------------------------------gtgCGGTAAGTGTATG-ACTATAAAAATACTT---AGAGAAACACATTAAGATGATGGACaggtttg-tttaatcttttctG--ATTATTGTGACCCATAAAAGCACAatt

a score=32810
s chr3            92690310 866 + 160039680 TTTATGTTTTAATATTAGGGGAGTAGAGCCAGTT--AACTTTAGGGAGTTACTCATTTTCATCTTGAGGTGGCCAATATGGGATGTGGAATTTTTACATGAGTTACACATGTTTGGCATAGTACTTTTGGTACATTGTGGCTTCAGAAGGGCCAGTGTTAAAACTGCTTCCATGTCTAAGCAAAGAAAACTGCCTACATATTGGTGTGTGCTGGCGGGGAATAATCAGGATAATGGGTTCCAGTCATGAGTGTAGTCTTTGTGGGTACTGTAAGGCCTGGAGCACTTGTGAGGCTGTG---ACACAAACACCCTGTGGA-----TGCACGCTAGGATCGTGTGTGTCTGCG---TGCACACTCTTGAC---CACAGCT----CCAGAAGATGTCTCT--AGACAAAGTCGTGACCCAATTTACTCTGGTAAGGGCAGAAACGGTTCACATTCCATTATTTGTAAAGTTACCTGCTGTTTGCTTTCATTATTTTTGCTACACATTTTATTTGTA-TTTAAATGTTTTAGGcaatctaagaacaaatgtaaaagtaaagatgcagtaaaaacgagttgcttggtgtgcccggctccatacgtatcaagcacagcggtaaacaaaatcc-catgtatttaactttttctttctttCttttttttttttttaagttttttgttttgttttgtttttgcttttgtGATTTTttttttctttttgatacttgcctaacatgcatgtgctgtaaaaatagttaacagggaaataacttgagatgacggctagctttgttttaatgtcttaagaaattttcatgaacaatccaag--cataattgttaagaaca--catgtatta----------------aagttcatgtaagtggaataaaagttttatgaatgGA
s HiC_scaffold_1 165853823 810 - 233722169 TTTTGGGTTCAGTATTAAGGAAGTTGAGCCAGTTTCATATTTAGGGAGTTACTTGTTTCCATCTTGAG------------------------------------------------CATCAACCTTTTGGTACATGGTGGCTTAACAAGGGCCACTGTTAAAGTTGCTTTTATGTCTAAGCAAATAAAACTGCCTACAAATTGATTTGTCTTGTTGGGGAGCAAAGGGGTTTATTAGTTCCAGACACAGGTGTAGTAATTGGGGGTACTTTAAGATCAGGAGCACCTCTGAGGCTGTGGAAAAACAGACATCCCAGGGGCCCTCCGCACGTGGAG-------GTTTCTGGGGGATAAGCAGCCTTGGTGTGCACAGCTGTTGCCCGCAGGTGTTCCTAAAGACAAAGCTGTCACTC-ACTGACTCTGGATAAGGCAGAAACGGTTCACCTTTCATGATTTGTAAATTTAGCCTCtgtttgctttcattatttttgcttcacattttatttgtattttatttgtcttaCGCAACCTAAgaacaaatgtaaaaataaagatgcaGTAAAAATTAATTGCTTGGTATTTGTTACTTCATGTATATAAAGCATAGCAGTAAACAAAAACCTCATGTATTTagctttatttagttttttttttcttttgtgaaaattt----------------------------------------ttttGGATATTTGCTTAGAATGCATGtgctg-aaaaaaaatcaaca-ggaaATAATTGCAGatgataatttgttttgtttc-atatctTAAGAAATTTTCATGAATAATCTAAGAATATAATTGttaataatattcatattttaaaagaatattcatcTTAAATTCCTGTAAGT-GAATCAAAGTTTTATGAATGGA

a score=25497
s chr3            92707355 685 + 160039680 AGGATGGTGCTAAGAGAAAAAAAAAATGACC-------TTCTTGTCAAGAATGGTTGTCAAGACTTTTTTAATTTGTAACAAAGGGGAAACATGAAATTTTCATATCCTGAGGAGAACATAGAACATTTCCCAGGAG-ATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAAGCAGGAGGAGAGGACATCAAACAATGGAGAA----TCTTCTGAGCATATGTTCCTCCTGTCCCATTTGTCTGAAGTCTTCCTCACCCAGCTCAGCAGCAGT---------CCCCAGActgctggctactgccac------------agcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACG------AAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 138257884 655 - 233722169 AGAATGATGCTGACAAAAGAAACAAGGGGCCGGTGAGGCTCT------GCATGAT-------actttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAG-GGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCT------------------------------------CCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGA------------CATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=27516
s chr3            92707355 1886 + 160039680 AGGATGGTGCTAAGAGAAAAAAAAAATGACCTTCTTGTCAAGAATGGTTGTCAAGACTTTTTTAATTTGTAACAAAGGGGAAACATGAAATTTTCATATCCTGAGGAGAACATAGAACATTTCCCAGGAG-ATTTCAGGAACTCAGAGTGCAGGACAAGGAGGGAAGCAGGAGGAGAGGACATCAAACAATGGAGAA----TCTTCTGAGCATATGTTCCTCCTGTCCCATTTGTCTGAAGTCTTCCTCACCCAGCTCAGCAGCAGT---------CCCCAGActgctggctactgccac------------agcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACG------AAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTCAGGAGCTGTAAGAGAGTCACACATATTTCAGTCACCAG-ACACTGTGGC------CACCTGT--------CCCA---TCCTGCTCTACCCTGCT---------AAGAAGTATCACTGATAATCATAGAAACACCATCGATGGTCATTCCATTA-GTTCTCACATCCTGTTCTTCATGTC----------------------------TTTAAACATCAGAAACAACATAAGATGCTGTTACCTGAAATCCAGCAGCACTAAATGTCT----AGTGACATTTTA--AAAGGTCTTCTATTCTTAGTCCCCAGGCATATACCAGTACATATACTATTGCAGAGATGACTAATTATAAAGAATAATCATTAATTGAAGGTGATTTTAGTTTAAGGTCAGTATTTCATGTGACCTTCTAGCACCCT--------GAGGAAATAAGCTCATCCTCTGACAAAAAATAAGCAAACCCTGTTCACTCCTGACATGGGAACACTAGTTCCTGTTATGAGGCTAGAGTTCAGATG---CATCCAAATTACCACCTG----------GTCAATCTAAGAGAGGCAAG---GTCAGTGTCATCTTGGTTGTATCCTTTTGATCAG-----AGAAGTATGTGAGCAGATCCCAGA----------AAAAGGGATCTCCTTCCCAAGACAAAGTGAGACCA----TGT-----TGACTTTCATTGCTCTA------------------GCTCTTCATCGTCAGAGAGGGGAAGCATGTTCTTCAGAAGTACCCTT--AGAAAGTACTCCC-TTAGAAAGTAGTCCAGATTCACAGTTATCTGTATTGAGCTTTGCCTCCTAAGTTGTCCTATAACACTGAAGTTACTATGGGCTCTATAGATCCAGAATAATCAAGGCTTTCTAGTGCCTCTCAAACCAAAGCTGGGGCTAGTATCTGTCAAAGCC--------------AGCATTGCCTCACACCTCAGACTTTACT---ATATTTTATGATCCATCAATT-----CCAACCACAAGGCCTAGGGATCTTTTTCACTCTCTTGCCCAGCTCTAGTCT-AGCTTTACTCTGA-AAGTCTTTGCTTTTAATTCTGGTGGAGGCTTACCAAAATAAGGAGTAGCACAAGATCTGTTGGTATCTCACCCAGTGAGTGGATGGTAGGGCCCTCTCCATCAGTCCTTTTATTCTGACCCTGGGCTCTG-TCCCAGCCTGTGAGACAGTGGCTGGGGATGGGAGGCCCTTCCTACTGACAGTCACATGGTTTTGTGACTGATCATGACAAGATATTCCTCATCAGCCTTC--TTCTTTGTGGGCAAGGCAAGC
s HiC_scaffold_1 138197259 1903 - 233722169 AGAATGATGCTGACAAAAGAAACAAGAGGC----TGGTGAGGCTCTGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAG-GGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTA------------------------------------GAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTT------------CGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCACTGAACACTGATTACTTCAGCTCAATTTCTGGTTCTCTCATTTTGAAAGTCAGGAAAATTACCTCTGACTTTTTTTAATCCCTCTTTG-----TAGTCTGTTAGGTCCTTTccttctgagttttattttaaagctcaTTTGAGAAATTGTCAAGCCATATAATCTCCAAACACAAGAAGAGTGACTGTTAATTAAAATCT-------CTAAGTGTAGGAGAAATGACACAGAAGTAAACTTTGTCTAGTGTTAGCATTCATTCTGACAC-------------ATCACCAAGATTTCT-------GAAAATATCCATTACAGGGAG-------CAGTTTGGG------------TATGA------AGcactctttaagaaaaaaaaaaaaagtatttccttttggaagaaatttgaaaacattttggttTTGAAGAATATGAAGAACTGTAACTACAAAGCAACTTGCAGTAACTTGTCCCAACAAAGTTAACATATGAATGAAGAACGTAAAATCAAAAGAAGTGAATTTGTTGGCCTAATGTTATCAGTGCATTATTGATCAGTTTCTAGTTTCCTGACTACTAATCCAAGGCTCTGTTCCTCCGAGCAATCTTCTTGTGAGGTCTAACCAGACCCACAGGTGTTCTTATGTCTTTC-TTCCTCTAAGTACCAATGTCCTCAGcactttttttctaaaactagACATGGctatatttccaaaattatatttcCATCACATACTCATGTTAGGA--TAATCTAG--TGGCCAGTATTTTTATTA--------------------CCTGCAATCGCAAAAACATCATCAGCT----------ACTATAATCAA-----TTTGGTTTCTCT------AAAACTGTAGCACACAGCTCTAAAAGTCTCCCAGTTGCTCTTGATCTTACTCTACCTATCACCCTCTGCTTTCAAATTTTCTTGCTCCTCTCTTCCTTGCCAAGCACAATTC-----AAGTTCCTGGGTTTTCGTAT---GCTCTGGTCTGAGCATACCTCTGAGAAGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGA-CTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCCATTCACTGAGCTCAGAGTAGGC

a score=23524
s chr3            92707523 562 + 160039680 GGAGGAGAGGACATCAAACAATGGAGAATCTTCTGAGCATA-TGTTCCTCCTGTCCCATTTGTCTGAAGTCTTCCTCACCCAGCT-------CAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGAC------GAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTCAGGAGCTGTAAGAGAGTCACACATATTTCA
s HiC_scaffold_1 138728597 509 - 233722169 GGCAAATAGGACAAGAGACTGCTCAGGTTCTTCTGCTAATGCTGCTCCTTGTGGCCCAG--GTCAGCAGCCG--CTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCC------------------CCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----------------TGGGCAGG-------------------------GGGACTTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATG--AATGCGCTGAAAGACAGT-ACAAAGGTTTTA

a score=14875
s chr3            92707567 477 + 160039680 TCCTCCTGTCCCATTTGTCTGAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcagccactgctgccaccactg---ctgccacag---cagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGC
s HiC_scaffold_1 138300124 404 - 233722169 TTCTTCAGTGCTGTTTCTTTGTGCTTCTTATGGCCCGGC-CATCAGTAGCCTCCAGA------GCAACAGCCAGAGCCACCAGACTGCTGTC--TATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCT------------------------------------------------------------ACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGG---------AGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGG---GACACTTAGGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=9250
s chr3            92707570 473 + 160039680 TCCTGTCCCATTTGTCTGAAGT-----CTTCCTCA---CCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138647003 339 - 233722169 TCCTGT----TTTCTCTGAAATGTGCGCATCATCAAGATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----------CCACAGCCTGCAC--CTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTC----------TTGGG-----GCATTTGGG---------GGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=9106
s chr3            92707584 459 + 160039680 TCTGAAGTCT-TCCTCAC-----------CCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138633151 333 - 233722169 TCTGAAATCTCTTCTCACAGCATCTGGATCCAGGTCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----------CCGCAGCCTGCAC--CTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcag---------caggcagacactgtgctgggcTCTTC----------TTGGG-----GCATTTGGG---------GGAGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=9010
s chr3            92707584 463 + 160039680 TCTGAAGTCTTC---CTCACC---------CAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGT
s HiC_scaffold_1 138439643 337 - 233722169 TCTGAAATCTTTTGTCTCAGCATCAGATTTCAGGTCAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAG--ACCACTGTCGCCAT---------------------------CACAGGAGTC--TGAT----------CTCCAGAGCCTGCACCTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAG---------------------CAGGTAGATACTGTGCTGGGCTCTTCTGGG---GGCATTTGGG---------GGCGGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=13500
s chr3            92707587 468 + 160039680 GAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC-AGGGgggcacttggga--ggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 138408295 353 - 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------------------------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12710
s chr3            92707587 468 + 160039680 GAAGTCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 138368900 353 - 233722169 GAGCTCTTCCTGGGCCAGCTTAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGG---------------------AAGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=9581
s chr3            92707591 452 + 160039680 TCTTCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138377571 331 - 233722169 TCCTCCTGACCCAGCTCAGCAGCAG-CCTCAGA------------GccagggcagcagccagagcctCCACTGGGGTCACACT------------------------CACAGCAGTCAGGAGCCTGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGA----CTGGGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTG----GATATTTTGGA-TGTACTTGGG---ACACTTTGGAAG-GCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=15173
s chr3            92707594 449 + 160039680 TCCTCACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACA-CAGGGgggcacttggga--ggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138333223 359 - 233722169 TTCTGGCCCAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCA-----------------------GGAGCC--TGGTGTC-----------------------TGTGGTGGTAGGGA--AAGAG----GCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------------------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGG---TGGGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=8216
s chr3            92707599 444 + 160039680 ACCCAGCTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138613644 305 - 233722169 ATCTAGATCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAG----------ACTACCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----------CCGCAGCCTGCAC--CTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------------------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTC----------TTGGGC-----CATTTGGG---------GGAGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG

a score=20463
s chr3            92707605 1617 + 160039680 CTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGC-----TGTGGGTGTTCAGGAGCTGTAAGAGAGTCACACATATTTCAGTCACCAGACACTGTGGCCACCTGTCCCATCCTG---CTCTACCCTGCTAAGAAGTATCACTGATAATCATAGAAACACCATC------------------GATGGTCATTCCATTAGTTCTCACATCCTGTTCTTCATGTCTTTAA-----ACAT-----CAGAAACAACATAAGA--TGCTGTTACCTGAAATCCAGCAGCACTAAAT----GTCTAGTGACATTTTAAAAGGTCTTCTATTCTTAGTCCCCAGGCAT---ATACCAGTACATATACTATTGCAGAGAT-----GACTAA---------------------------TTATAAAGAATAATCATTAATT-----------------GAAGGTGATTTTAGTTTA-AGGTCAGTATTTCATGTGACCTTCTAGCACCCTGAGGAAATAAGCTCA--TCCTCTGACAAAAAATAAGCAAACCCTGTTCACTCCT---GACATGGG--------------------AACACTAGTTCCTGTTATGAGGCTAGAGTTCAGATGCATCCAAATTACCAC---CTGGTCAATCTAAGAGAGGCAAGGTCAGTGTCATCTTGGTTGTATCCT-TTTGATCAGAGAAGTATGTGAGCAGA--------TCCCAGAAAAAGGGATCTCCTT--CCCAAGACAAAGTGAGACCATGTTGACTTTCATTGCTCTAGCTCTTCATCGTCAGAGAGGGGAAGCATGTTCTTCAGAAGTACCCTTAGAAAGTACTCCCTTAGAAAGTAGTCCAGATTCACAG-----TTATCTGTATTGAGCTTTGCCTCCTAAGTTGTCCTATAACACTGAAGTTACTATGGGCTCTATAGATCCAGAATAATCAAGGC-------TTTCTAGTGCCTCTCAAACCAAAGCTGGGGCTAGTATCTGTCAAAGCCAGCATTG-CCTCACACCTCAGACTTTACTATATTTTATGATCCATCAA----TTCCAACCACAAGGCCTAGGGATCTTTTTCACTCTCTTGCCCAGCTCTAGTCTAGCTTTACTCTGAAAGTCTTTGCTTTTAATTCTGGTGGAGGCTTACCAAAATAAGGAGTAGCACAAGATCTGTTGGTATCTCACCCAGTGAGTGGATGGTAGGGCCCTCTCCATCAGTCCTTTTATTCTGACCCTGGGCTCTGTCCCAGCCTGTGAGACAGTGGCTGGGGATGGGAGGCCCTTCCTACTGACAGTCACATGGTTTTGTGACTGATCATGACAAGATATTCCTCATCAGCCTTCTT
s HiC_scaffold_1 138180359 1536 - 233722169 CTTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCC------------------------CTCCACAGCAGCTggagcctcc-------------------cgagggctg--------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTG------------------CAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTG------------GGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAG---------ACCTTGACCACAGGTCACATTTGGGCACTCTGATTCTCT---TAGCATCACTTG-AGCCATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCAT--ATTCTTACACCATCACATTTATCTCTCTGAATTCTACATGCACATAGAAGTTGCATAAGAATTGACATTGTT----ATACAACAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAACATCTTGAGACTAAAATTGCCCAAtttcagggaaaatattttttaaaagaaaaagcatcaTTTCTTCTTGTCATAACCTATAAGATGATCTTATCATGCAGGTCAGGGTTGCTAAGGATC-TAGAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAA-CTTATCAAATCCTGCAGACGTGGGGCTTGAATCTCAGGCAGTCCAGAGCTAGGTTC-------AGTCCAGAGCTCAGATGTCCTCAGTTCACAGCTAACTGG--GGTTTATAAGTTAGCAGGTCTCAGACAT----GTGGTATCCTAATTAACTTGAGAA--ATACCAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCCCAGAAAAGCAC---------TTGGTTTTCTCTTCCCTTGCT-------GTCAGGAACAGGGA-TGTATTC-TCAGAGGTA-----------TACTCCATC------CTGTCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTCTTGTCCTGATGAG----CCTACTGCACTCAGAGAAATTTGTTCTCTCCAGAACC--------CaaggcatatacatatatattttccctCGTTTCTTTACTG----------CTGCAGAGCCTTGTTTTGTTCCCATCTTTTAGTCTTCCCTAAATTCTCC--TCCTCTGAAAGGTACCCCTCTCAA---CTGAGGTCCCTTTCCAGCCACCTCTCC-------------------------------TACTGCTATTTTCAATGGAGACTTACCAGTGTCA-CAGGAGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGTGCCCTTTTATTGGGCCCATGAGCTCTTCTTTAGC--ATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATGATATTGTGTAAAATGGTGAC----TGTTTCTCACCTATCTTCCT

a score=16634
s chr3            92707606 511 + 160039680 TCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT---CAGCTG--TGGGTGTTCAGGAGCTGTAAGAGAGTCACACATATTTCAGTCACCAGACACTGTGGCCACCTGTCCCATCC
s HiC_scaffold_1 138145833 402 - 233722169 TCAGCAACAG-CCCCAGATTGCTGGCTACTCCCCC------------------------CTCCACAGCAGCTGGAGCC-CCTCGAGGGCTG--------------------------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTG------------------------------------CAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGG------------------------GGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATGCAGGAAAC--AGGCCACCCTGCCCGCTC

a score=12026
s chr3            92707638 319 + 160039680 cacagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttgg---agggcactt
s HiC_scaffold_1 138196594 289 - 233722169 CACATCAGCAATTA--GCCTCCAGATTGCTG--------GCTACTTCCTCATCCACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTT

a score=9004
s chr3            92707645 384 + 160039680 gccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAG---AGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCT---GCAGCAGCCACCA------GAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcattt---gggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138197542 351 - 233722169 GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGG----AGTCGAAG-----------AGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCT------------------AGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCA----AGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGG---GGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTG

a score=11386
s chr3            92707661 425 + 160039680 ctgctgccacagcagccact---------gctgccaccactgctgccacagcagccactgctgccacca--ctgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcattt---gggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT---CAGCTG--TGGGTGTTCAGGAGCTGTAAGAGAGTCACACATATTTCAG
s HiC_scaffold_1 138135515 355 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCT---ATAGCAGCTGGAGACCCCAGCAGCTGGCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTG------------------------------------------------------------CAGCAGCCCCCAGAACTGACCCTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------------------ACTTTGG-----GGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=12141
s chr3            92707661 413 + 160039680 ctgctgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccacc-----actg-ctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAG--------GAAGACA------CAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATC-TCAGCTGTGGGTGTTCAGGAGCTGTAAGAGAGTCA
s HiC_scaffold_1 138154332 396 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-------GCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-------------------AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTG--AGACAGTCA

a score=8342
s chr3            92707673 377 + 160039680 cagccactgctgccaccactgctgccacagc---agcc----actgctgccac---cactgctacagcATCCAGAGCTGTGGCGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGC----TGTGGG
s HiC_scaffold_1 138474316 304 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTT----------------------CTTGGG-----GCATTTGGG---------GGAGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTGGG

a score=8380
s chr3            92707700 343 + 160039680 cagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACG-------AAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGA---CACAGGGgggcacttgggaggacatttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138417081 288 - 233722169 CAGCAGCCAAGTCCCCACTGGACTCACACTCACAGTAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGA----CTGGGCCTGtggtggctggggcagcagtcACCACCCCCAGAACTA------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATGTG----GACACTTGGGA-TGCAATTGGG---GCACTTTGGAAG-GCTTGGCA---TGATTGGTTTTACTGGTAGGACATCTTGG

a score=7554
s chr3            92707760 289 + 160039680 GATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAGCTGCAGCAGCTACCAGAGCTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggaca----tttgggtgggcattttggagggcactttgggatctggcatttgggagggcatttgggGGTGCACTTTGGAGGAGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGG
s HiC_scaffold_1 138528502 247 - 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCT-------------------GAGCAACAGCAGGA---AGAGCCT-----------GGAGATCAGCAGGGTGCGGTTAGGAGAACAAACATTTGAG-AATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGG------------ATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAG

a score=8628
s chr3            92707806 183 + 160039680 AGCTGCAGCAGCTACCAGAGCTGCAGCAGCC------ACCAGAGCTACAGCAGCCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggtgggcattttgg---agggcactttgggatctg-gcatttgggagggcatttgggGG
s HiC_scaffold_1 138154468 188 - 233722169 AGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAG

a score=27536
s chr3            92718651 699 + 160039680 AGGATGATACCAAGAAAAAAGAAAAACAATGGTCACTTCAGGGACATTTGTCCATGCTTATTTTTAATTCTTAACAAATATGCAAAGGGA------CATTGTTATCACCTGAACAGAATGCAGAACATTTCACAGGAG-ATTTCAGCATTTCAGAGGACAGGGCCAGGAGGGAAACAGGAGGAGAGAGAATCAGGCATTGGGGA----GTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCCGAAGTCTTCCTCATACAGGTCAGCAGCAAT---------CCCCAGActgctggctactgccacaacagccactgctgccaccactgcttccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAGCT---GTGACGATGGCGA---CGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 138257884 655 - 233722169 AGAATGATGCTGACAAAAGA----AACAAGGGGCCGGTGAGG-----CTCTGCATG---ATactttattatttagaaatatagaaGAGGAGTGAGAAACTG--ACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAG-CAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACC---GCCACTGCTGC---------------AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------CCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGA------------CATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=28932
s chr3            92718651 762 + 160039680 AGGATGATACCAAGAAAAAAGA-AAAACAATGGT----CACTTCAGGGACATTTGTCCATGCTTATTTTTAATTCTTAACAAATATGCAAAGGGA------CATTGTTATCACCTGAACAGAATGCAGAACATTTCACAGGAG-ATTTCAGCATTTCAGAGGACAGGGCCAGGAGGGAAACAGGAGGAGAGAGAATCAGGCATTGGGGA----GTCTTCGGAGCATGTGCTCCTCCTGCACCATTTGTCCGAAGTCTTCCTCATACAGGTCAGCAGCAAT---------CCCCAGActgctggctactgccacaacagccactgctgccaccactgcttccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAGCT---GTGACGATGGCGA---CGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTCAGGAGCTATAAGAGAGTCACACATATTTCAG-TCACCAAACACTGTGGC
s HiC_scaffold_1 138197259 721 - 233722169 AGAATGATGCTGACAAAAGAAACAAGAGGCTGGTGAGGCTCTGCAGGGA---------------ATactttattatttagaaatatagaaGAGGAGTGAGAAACTG--ACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAG-CAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACC---GCCACTGCTGC---------------AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------CCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGA------------CATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGC

a score=24069
s chr3            92718905 490 + 160039680 CAGCAGCAATCCCCAGActgctggctactgccacaacagccactgctgccaccactgcttccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGAC------GAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTCAGGAGCTATAAGAGAGTCACACATATTTCA
s HiC_scaffold_1 138728685 421 - 233722169 CAACTGGAGCCCCCAGACTGCtggccactgccac---------------caccactgct---gcAGCAGccactgc---caccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----------------TGGGCAGG-------------------------GGGACTTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATG--AATGCGCTGAAAGACAGT-ACAAAGGTTTTA

a score=14761
s chr3            92718952 402 + 160039680 gccaccact-gcttccacagcagccactgctgccacca--ctgctgcc-acagcagccactgctgccaccactgc------------tgccacag---cagccactgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGC
s HiC_scaffold_1 138300161 367 - 233722169 GCCATCAGTAGCCTCCAGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCA------------------CTTCCAGAGCTACAGCAGTCCCCTGAACTGGA------------------------GCTACAGCAGGTAGAGACTGG---------AGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGG---GACACTTAGGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=9273
s chr3            92718959 394 + 160039680 ctgcttccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACG-------AAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138377555 347 - 233722169 CCATTTTCTCAATAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA-GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGA----CTGGGCATGTGGTGGCTCAGGCAACAGCCACCACCCCC------------------------------------AGAACTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTG-----TGGATATTTTGGATGTACTTGGG---ACACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=12223
s chr3            92718966 307 + 160039680 cacagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttgg---agggcactttggagt
s HiC_scaffold_1 138196594 295 - 233722169 CACATCAGCAATTA--GCCTCCAGATTGCTG--------GCTACTTCCTCATCCACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGATGT

a score=11819
s chr3            92718989 395 + 160039680 ctgctgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAGCTGT------------GACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAG--------GAAGACA------CAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATC-TCAGCTGTGGGTGTTCAGGAGCTATAAGAGAGTCA
s HiC_scaffold_1 138154332 396 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCC-------------TTGAGGGCTGTCTGTAGCCCTCAGGCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCCA-GAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACC--TGAGACAGTCA

a score=12246
s chr3            92718989 407 + 160039680 ctgctgccacagcagccact---------gctgccaccactgctgccacagcagccactgctgccacca--ctgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT---CAGCTG--TGGGTGTTCAGGAGCTATAAGAGAGTCACACATATTTCAG
s HiC_scaffold_1 138135515 355 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCT---ATAGCAGCTGGAGACCCCAGCAGCTGGCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTG------------------------------------------CAGCAGCCCCCAGAACTGACCCTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTGGGG---CCTTTAGA-----------GGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=17146
s chr3            92718992 392 + 160039680 ctgccacagcagcc----actgctg-ccaccactgctgccacagcagccactgctgccaccact---------gctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCT---CAGCTG--TGGGTGTTCAGGAGCTATAAGAGAGTCA
s HiC_scaffold_1 138145831 363 - 233722169 CTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGC------TGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCC------------------CCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGG------------------------GGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTA

a score=8765
s chr3            92718998 355 + 160039680 cagcagccactgctgccaccactgctgccacagcagcca------ctgctgccaccactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtg---cacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138613655 294 - 233722169 CAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcag---------------------caggcagacactgtgctgggcTCTT------------CTTGGGC---CATTTGGGGGAGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG

a score=13553
s chr3            92718998 367 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACA-CAGGGgggcacttggga--ggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 138408318 330 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCC------------------------------------CCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12482
s chr3            92718998 367 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacAACATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 138368923 330 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAG---GAAGAGACCAG--------AGGAGGGCAT-----GGCTCT-----GGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=19252
s chr3            92718998 492 + 160039680 cagcagcc-----actgctg-ccaccactgctgccacagcagccactgctgcc--accactg-ctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGC-----TGTGGGTGTTCAGGAGCTATAAGAGAGTCACACATATTTCAGTCACCAAACACTGTGGCCACCTGTCCCATCCTG---CTCTACCCTGCTAAGAAGTATCACTGATAATCATAGAAACACCATCTATGGTCATTCCATT
s HiC_scaffold_1 138180364 469 - 233722169 CAGCAACCTCCAGACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---CCTTAGGGGGACACTTTGGGGGGCATTTTGG------------------------GGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAG---------ACCTTGACCACAGGTCACATTTGGGCACTCTGATTCTCT---TAGCATCACTTG-AGCCATAGAAACATCATCTCAAGTGGTTTTATT

a score=9053
s chr3            92719001 359 + 160039680 cagccactgctgccaccactgctgccacagc---agcc----actgctgccac---cactgctacAACATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGC----TGTGGG
s HiC_scaffold_1 138474316 304 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcagg------------------------cagaAACTGTGCTGGGCTCTTCTTGG---GGCATTTGGG---------GGAGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTGGG

a score=15627
s chr3            92719009 344 + 160039680 gctgccaccactgctgccacagcagccactgctgccac------cactgctacAACATCCAG-AGCT--GTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACA-CAGGGgggcacttggga--ggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138333241 341 - 233722169 GCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=8397
s chr3            92719083 270 + 160039680 GAAGAGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGgggcacttgggaggacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAG
s HiC_scaffold_1 138417148 221 - 233722169 GAAGAGA----CTGGGCCTGtggtggctggggcagcagtcACCACCCCC------------------------------------AGAACTAGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATG----TGGACACTTGGGA-TGCAATTGGG---GCACTTTGGA-AGGCTTGGCA---TGATTGGTTTTACTGGTAGGACATCTTGG

a score=9412
s chr3            92719088 271 + 160039680 GATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggag----gacatttgggcgggcattttggagggcactttggagtctggcacttgggagggcacttgggggtgcacttgggagggGGCTGGCACTGCTGCTGGCTCTGCTGACAGGACATCTCAGCTGTGG
s HiC_scaffold_1 138528502 247 - 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCT-GAGCAACAGCAG---GAAGAGCCTGGAGATCAGCA-----------GGGTGCGGTTAGGAGAACAAACATTTGAG-AATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGG------------CCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAG

a score=7468
s chr3            92719114 185 + 160039680 GCAGCAGCCTCCACCCCCTGAGCTGCAGCATCCTCCAGA------GCTACAGCAGCCTCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGgggcacttgggaggacatttgggcgggcattttgg---agggcactttggagtctg-gcacttgggagggcacttggggg
s HiC_scaffold_1 138154472 184 - 233722169 GCAGCAGCCAACA------GAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAG

a score=22515
s chr3            92737713 618 + 160039680 TTCCCAGGAAAT--TTCAGCAAATCAGAGGGCAGAACAAGGAGGGATGGAGAAGGAGAGGATATCAAGCAATGGAGAA----TCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCAGGTCAACAGCAGT---------CCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAG------AGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTT----GGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCT
s HiC_scaffold_1 138257997 542 - 233722169 TTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAG-ACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGC------------------CACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGC------------------------------AGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCC------------------------------------------GGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=23782
s chr3            92737734 682 + 160039680 TCAGAGGGCAGAACAAGGAGGGATGGAGAAGGAGAGGATATCAAGCAATGGAGAA----TCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCAGGTCAACAGCAGT---------CCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAG------AGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTT----GGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCAGAGCTGTGAGAGAATCATAGATATGTCAGATGGCAG-GCACTGTGGTAACCTGACCAATGCTGGCCCCA
s HiC_scaffold_1 138197397 603 - 233722169 TCAGAGCCTAGGACAATGAAG-ACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGC------------------CACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGC------------------------------AGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCC------------------------------------------GGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCA--CTGAACACTGATTACTTCA

a score=21234
s chr3            92737829 506 + 160039680 TCTTCCTCACCCAGGTCAACAGCAGTCCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGA------CAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGC
s HiC_scaffold_1 138728642 426 - 233722169 TCCTTGTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTG---ACACCAACTGGAGCCCCCAG-------ACTGCtg--------gccactgccaccaccactgctgc---AGCAGccactgc---caccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAG------------------------CCCAGGCTACAGCAGGAAGACGCTGGA---------------------GGTGGGCA-----GGGGGACTTGGGTG---GGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGC

a score=12867
s chr3            92737892 443 + 160039680 gccaccact-gctgccacagcagccactgctgccacca--ctgctgcc-acagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccaca---acagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGC
s HiC_scaffold_1 138300161 367 - 233722169 GCCATCAGTAGCCTCCAGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGAC------------------TGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCA------------------CTTCCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAG---GTAGAG--------------------------------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGG--------------AGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=8736
s chr3            92737911 278 + 160039680 cagccactgctgccacca--ctgctgccacagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccac------tactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGA------CAGCAG--CCTCCAAC--CCCAGATCTGCAGCAGCCACCA------GAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGA
s HiC_scaffold_1 138728682 269 - 233722169 CACCAACTGGAGCCCCCAGACTGCtg-----------gccactgccaccaccactgctgcAGCAGccactgc---caccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctg---------cagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAG----GCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTG------CAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGA

a score=5822
s chr3            92737922 367 + 160039680 gccaccact-gctgccacagcagccactgctgccacca--ctactgcc-acagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGG-GCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGG
s HiC_scaffold_1 138300161 309 - 233722169 GCCATCAGTAGCCTCCAGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCA---GTTGCAATCACTACTGCAGGTACAGTGACTGC------CACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGA---AGAGATCGGTG---------GGGCCTGTGGTGGCT--CAG----GCAGCAGCCCCCA------------------CTTCCAGAGCT------ACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGGAGG---------AAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGG---GACACTTAGGGGAGCACTTAG

a score=8171
s chr3            92737937 401 + 160039680 acagcagccactgctgccaccactactgccacagcagcca--ctgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGC-ATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGT
s HiC_scaffold_1 138439680 300 - 233722169 ACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAG--ACCACTGTCGCCATCACAGGAGT--CTGAT-------CTCCAGAGCCTGCACCTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAgctggg-----agcag-------------------agcaggaaggagCAGCAGGT---------AGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGCGGGGCACTTGGGAGGG-----GGCAGG-------CACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=8434
s chr3            92737938 431 + 160039680 cagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGG-------AGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGAGGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGG----CCTG---GCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG----CTGTGGGTGTTCCAGAGCTGTGAGAGAATCATAGA
s HiC_scaffold_1 138377564 377 - 233722169 CAATAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA----GccagggcagcagccagagcctCCACTGGGGTCACACTCACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACT----GGGCATGTGGTGGCTCAGGCAACAGCCACCA------------------------------------CCCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCTGGAGCC------------------------ACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTGGGA---CACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGAA

a score=6337
s chr3            92737938 344 + 160039680 cagcagccactgctgccaccactactgccacagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAG-CTGTGGTGATGACAATGGAGA---GATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCA------GGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGG
s HiC_scaffold_1 138333239 303 - 233722169 CAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCA-------------------GGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGC--AGCCACCACCCCCAGAACT----GCAGCAGCCCCCACCC---------------CCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAG---GAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGTGCACCTGGGTG---GACACTTAGGAAGG

a score=9822
s chr3            92737959 418 + 160039680 ctactgccacagcagccact---------gctgccaccactgctgccacaac-agtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCT---CAGCTG--TGGGTGTTCCAGAGCTGTGAGAGAATCATAGATATGTCAG
s HiC_scaffold_1 138135515 355 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCTATAGCAGCTGGAGACCCCAGCAGCTG--GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGG---GACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTA------------------CCCCCAGAGTTGCAGCAGCCCCCAGAACTG--------------------------------------------ACC----CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG-GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=12982
s chr3            92737959 419 + 160039680 ctactgccacagcagcc-----actgctgccaccactgctgccacaacagtcactactgccacc-----acta-ctacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGG----AGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCAGAGCTGTGAGAGAATCATAGATATGTCAGA
s HiC_scaffold_1 138154332 408 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG----GCAGTGGCAACTATAGCA-------------TTGTGGTGGTTCAGGCAGTAGCCACCA-CTCCAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACTGG-GGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGC---ACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACC-TGAGACAGTCA-AATTGCGTCAGA

a score=15153
s chr3            92737962 441 + 160039680 ctgccacagcagcc----actgctg-ccaccactgctgccacaacagtcactactgccaccact---------actacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCT---CAGCTG--TGGGTGTTCCAGAGCTGTGAGAGAATCATAGATATGTCAGATGGCAGGCACTGTGGTAACCTGACC
s HiC_scaffold_1 138145831 400 - 233722169 CTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAG------CTGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCA------------------------------------CCCCCAGAGCTG------CAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACAC-----------TTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGAT-GCAGGAAACAGGCCACCCTGCCC

a score=8320
s chr3            92737968 366 + 160039680 cagcagccactgctgccaccactgctgccacaacagtca------ctactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 138633189 295 - 233722169 CAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGG-----------------------------------GGAGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=8341
s chr3            92737968 366 + 160039680 cagcag---ccactgctgccaccactgct---gccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 138647047 295 - 233722169 CAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGG-----------------------------------GGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=7838
s chr3            92737968 366 + 160039680 cagcagccactgctgccaccactgctgccacaacagtca------ctactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 138613655 294 - 233722169 CAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGCCATTTGGG-----------------------------------GGAGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG

a score=11138
s chr3            92737968 380 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGAGGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGA--GGCCTG-------GCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCA
s HiC_scaffold_1 138408318 332 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagc---ccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCA------------------------------------TCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAG------------------------GAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTCCA

a score=10253
s chr3            92737968 380 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGGGTGTTCCA
s HiC_scaffold_1 138368923 332 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagc---ccCCATTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCA------------------------------------CCCCCAGAGCTTGAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTCCA

a score=12720
s chr3            92737968 366 + 160039680 cagcagccactgctgccaccactgctgccacaacagtcactactgccaccactactacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGAGGACACTTGATAGGACATTTGGGTGGGCA-------------TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 138333239 343 - 233722169 CAGCAGCCCCCAGAGCTatggcagcagccagagc---ccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------------------------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=8075
s chr3            92737971 370 + 160039680 cagccactgctgccaccactgctgccacaac---agtc----actactgccac---cactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGA--GGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGC----TGTGGG
s HiC_scaffold_1 138474316 304 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCCC---------------------TCAGGGATG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcag--------------gaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGG-----------------------------------GGAGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTGGG

a score=7996
s chr3            92738002 332 + 160039680 agtcactactgccaccactactacagcACCCAGAGCTGTGGTGATGACAATGG-------AGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCA-TTTGGAGGGCACTTTGAGGCCTGGCACTTGGGA--------GGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 138417090 279 - 233722169 AGTCCCCACTGGACTCACACTCACAGTAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACT----GGGCCTGtggtggctggggcagcagtcACCA------------------------------------CCCCCAGAACTAGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAG---------------------CAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATGTG----GACACTTGGGATGCAATTGGGGCACTTTGGA-AGGCTTGGCATGA---TTGGTTTTACTGGTAGGACATCTTGG

a score=4878
s chr3            92738012 280 + 160039680 gccaccactactacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGC---------AGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGA-TAGGACATTTGGGTGGGCATTTGGA-GGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAG
s HiC_scaffold_1 138408308 263 - 233722169 GCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagcca--gagcccCCACTGGGCTC-------ACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTC---AGGCAGCAGCCACCAT---CCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAG----------CAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAG---GGCACTTTGGTGGGCATTTTGGAG

a score=10049
s chr3            92738022 241 + 160039680 ctacagcACCCAGAGCTGTGGTG---ATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATT----TGGAGGGCACTTTGA
s HiC_scaffold_1 138196666 220 - 233722169 CTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGG---GACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGA

a score=17728
s chr3            92738022 737 + 160039680 ctacagcACCCAGAGCTGTGGTGATGACAATGGAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGC-----TGTGGGTGTTCCAGAGCTGTGAGAGAATCATAGATATGTCA------GATGGCAGG---CACTGTGGTAACCTGACCAATGCTGGCCCCACAAAAGCATTAGTGATCATCATAGAAACACCATTCATAGTCATTTCATTTGTAATG-----------TACTCAGATTGTCACATTTTGTTC-----ACCCTGTCTTTAAATATAAGACACTCGTGCACATGAGATGGTTAT--------------CTGAAATCCAGCAACATTAAATAA-ATATCTGGTCA----ATTTTAGATAGGA-----------------------------CTTTGTACTTGTATATGTTCTATTTCAGAGATAACTAGTTGTAAAAGAAAGAA------------TCTTCAAAACCTGCAGGAGAATTTAGT--TTAAGGTCAGTATTTTAAAGGACCTACTAGCACATTTAGGGAGTAAGCTCAGCCCATGACAGAAAAATATGTAAACCCTGTTCAGACCTG
s HiC_scaffold_1 138180427 775 - 233722169 ctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGC------------------------CCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGAC--------------TGGGGCCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGATT-CTCTTAGCATCACTTGAGC------------CATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATCTCTCTGAATTCTACATGCACATAGAAGTTGCATAAGAAT-TGACATTGTTATACAACAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAACATCTTGAGACTAAAAT-TGCCCAAtttcagggaaaatattttttaaaagaaaaagcatcaTTTCTTCTTGTCATAACCTATAAGATGATCTTATCATGCAGGTCAGGGTTGCTAAGGATCTA-GAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAACTTATCAAATCCTG

a score=7727
s chr3            92738058 282 + 160039680 GATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCAACCCCAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGC-TGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGG-CACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAGCTGTGG
s HiC_scaffold_1 138528502 247 - 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTG-AGCAACAGCAGGA---AGAGCCTGGAG----ATCAGC-----------AGGGTGCGGT---------TAGGAGAACA--------AACATTTGAG-AATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAG

a score=3205
s chr3            92738084 184 + 160039680 ACAGCAGCCTCCAACCCCAG-----ATCTGCAGCAGCCA------CCAGAGCTGCAGCAG-----CCCCCAGAGC---TGGAGCC----ACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCT
s HiC_scaffold_1 138135559 187 - 233722169 ATAGCAGCTGGAGACCCCAGCAGCTGGCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACT---GACCCTGCAG-------CAGGAAGAGACTGG--GAGCCACTTAGGGGGACACT--------ACTTTGGGGCCT

a score=5905
s chr3            92738087 204 + 160039680 GCAGCCTCCAACCCCAGATCTGCAGCAGCC------ACCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTT--GGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCA
s HiC_scaffold_1 138154472 194 - 233722169 GCAGCAGCCAAC---AGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCA-------------AGAAGAGACTGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAAT-ACACTTGGGA-GGTGTTTGGCA

a score=4446
s chr3            92738101 233 + 160039680 CAGATCTGCAGCAGCCACCAGAGCTGCAGCAGCCCCCAG---AGCTGGAG---------CCACAGCAGC-----CCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---------------AGGAGGACACTTGATAGGA-CATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCT-------------------GGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTGGTTCTGTTAACAGGACATCTCAG
s HiC_scaffold_1 138112357 285 - 233722169 CAGGTCAGTTACAGCCTCCGGAGTTGTGGCAGCAGCCAGGACATCCAGAGGACAGGTTTTCACAGCAGTTTGAACACTGGGGCTGGTGCAGATAGAATCGTGGAAACCGGTAAGATACCAGAGATACACGGGTGGAAACACAGAAGGAGGAGGCTGGAGGGGAGCCAGAAGGGGGACATGAAGAAGGAGCTTGTGGGCACTGAGGGTGGCAATCAAGTAGACATTTTGGGGGGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCTTGG

a score=6647
s chr3            92738118 193 + 160039680 CCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGAGGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCACTGCTTCTG
s HiC_scaffold_1 138145977 164 - 233722169 CCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAG------GAA--GAGACTG----GGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGGGGTG--------GGGCACTTGGGGGT---GCATTTGGGA-GGTGGTTGGCA-----CTGCTGCTGGTTCTG

a score=4330
s chr3            92738125 127 + 160039680 TGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC--AGGAGGACACTTGATAGGACATTTGGGT---GGGCATTTGGA
s HiC_scaffold_1 138196768 118 - 233722169 TGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAG------GAA--GAGACT------GGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGA

a score=5314
s chr3            92738141 148 + 160039680 GCTGGAGCCACAG---CAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGATAGGACATTTGGGTGGGCATTTGGA-GGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGG
s HiC_scaffold_1 138417169 139 - 233722169 gctggggcagcagtcACCACCCCCAGAACTAGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGG---------AGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAG---GGCAC-TATGTGGACACTTGG

a score=3337
s chr3            92738141 162 + 160039680 GCTGGAGCCACAGCAGCC---CCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGAGGACACTTGA-TAGGACATTTGGGTGGGCATTTGGA-GGGCACTTTGAGGCCTGGCACTTGGGAGGGCATTTGGCAGGGGCCTGGCAC
s HiC_scaffold_1 138377699 153 - 233722169 GCTCAGGCAACAGCCACCACCCCCAGAACTGGAGCCACAGCAGCTCCCAGA------GCTGGAGCCACA----GCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAAC---ACACTTTGT-GGATATTTTGGATGTACTTGGGAC

a score=24862
s chr3            92750429 572 + 160039680 TGAGGACAATTCAGAACATTTTCCAGGAG-ATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCACCCAATGGAGA-----GTCTTCTGAGCGTGTTCTCCTCCTGTACCATTTGTCTGAAGTCTTCCTCATGCAGGTCAGCAGCAGT---------CCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccac------agcagccactgctgccaccactgctacagcATCCAGAGCT---GTGACGATGGCGA---CGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAG---GGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138257979 560 - 233722169 TGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGC--AGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCAC---------------CGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGA------------------GGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=26468
s chr3            92750472 614 + 160039680 GAGGGCAGAACAAGGAGGGAAGC--AGGAGGAGAGGACATCACCCAATGGAGAGTCTTCTGAGCGTGTTCTCCTCCTGTACCATTTGTCTGAAGTCTTCCTCATGCAGGTCAGCAGCAGT---------CCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccac------agcagccactgctgccaccactgctacagcATCCAGAGCT---GTGACGATGGCGA---CGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAG---GGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCAGACGGCAG-GCACTGTGGTAACCTGATCAATGCTGGCCCCA
s HiC_scaffold_1 138197414 586 - 233722169 GAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACA-------------GGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCAC---------------CGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGA------------------GGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCA--CTGAACACTGATTACTTCA

a score=9616
s chr3            92750518 486 + 160039680 GGAGAGTCTTCTGAGCGTGTTCTC---CTCCTGTACCATTTGTCTGAAGT-----CTTCCTCATG---CAGGTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138646975 367 - 233722169 GGTGAGGCTTCTCATTGGCTCCTAGAATTCCTGT----TTTCTCTGAAATGTGCGCATCATCAAGATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT-CCACAGC-----------------CTGC------------ACCTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=15140
s chr3            92750540 465 + 160039680 TCCTCCTGTACCATTTGTCTGAAGTCTTCCTCATG--CAGGTCAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgcc-acagcagccactgctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138300124 404 - 233722169 TTCTTCAGTGCTGTTTCTTTG---TGCTTCTTATGGCCCGGCCATCAGTAGCCTCCAGA---------------GCAACAGCCAGAGCCACCAG-ACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGC---AGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTT------------------CCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAG---GTAGAG--------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGG---------------GAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=11077
s chr3            92750561 429 + 160039680 AAGTCTTCCTCATGCAGGT-----CAGCAGCAGTCCCCAGA---ctgctggctactgcca-cagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagccactgc---------tgccacagcagccactgctgccaccactgctacagcATCCAGAGCT---GTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCT---ACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAG------GAAGACA--------CAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGG-GCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138258075 441 - 233722169 AGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTG--------GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGG----AGTCGAAG-----------AGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGA-GGGGGTTGGCACTGCTG

a score=11302
s chr3            92750561 429 + 160039680 AAGTCTTCCTCATGCAGGT-----CAGCAGCAGTCCCCAGA---ctgctggctactgcca-cagcagccactgctgccacca--ctgctgccacagcagccactgctgccaccactgctgccacagcagccactgc---------tgccacagcagccactgctgccaccactgctacagcATCCAGAGCT---GTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCT---ACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAG------GAAGACA--------CAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGG-GCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138197452 441 - 233722169 AGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTG--------GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGG----AGTCGAAG-----------AGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGA-GGTGGCTGGCACTGCTG

a score=23473
s chr3            92750580 425 + 160039680 CAGCAGCAGTCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgct---gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGAC------GAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138728685 383 - 233722169 CAACTGGAGCCCCCAGACTGCtggccactgccac---------------caccactgctgc---AGCAGccactgc---caccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGG--------CAGGGGGAC--TTGGGTGGGCATTTGGGGGT---------------GCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGC

a score=12070
s chr3            92750634 413 + 160039680 ctgctgccacagcagccact---------gctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGGGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCAG
s HiC_scaffold_1 138135515 355 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCT---ATAGCAGCTG--GAGACCCCAGCAGCTG--------------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAG------------------------------------------CAGCCCCCAGAACTGACCCTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=16450
s chr3            92750637 413 + 160039680 ctgccacagcagcc----actgctg-ccaccactgctgccacagcagccactgctgccacagcagccact-----gctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGGGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCAGACG
s HiC_scaffold_1 138145831 378 - 233722169 CTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGCT------------GGAGCCCCTCGAGGGCTG--------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCC------------------CCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGGGG-------TGGGG-----CACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATG

a score=8882
s chr3            92750643 361 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGA---------------TGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138398549 325 - 233722169 CAGTAGCTCCTCCTGGTCTAGCT-CAGCAACAGCACCCAGAGC---CATGGCAGCAACCAGAGTCCCCACTGGGCTCACACTTAGAGCAGTTAGGAGCTTAGGGCCTGCAGTAGGAGCAGAGGA---TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAGCC-------------------CCAGAGCTGAAGCC------------------------ACAGCAGGAAAATACTGGAGGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAGGGCACTTCAGTG---GGTATTTTGG-GTGCACTTGAGAGGGGACTGGCactgctgctgcttttgctgacAGGATGTCTTAG

a score=9257
s chr3            92750643 396 + 160039680 cagcagccactgctgccaccact-----gctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACG-------AAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGA--------GGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG----CTGTGGGTGTTCAGGAGCTGTGAGAGAATCATGGA
s HiC_scaffold_1 138377564 377 - 233722169 CAATAGCTCCTCCTGACCCAGCTCAGCAGCAGCCTCAG-AGccagggcagcagccagagcctCCACTGGGGTCACACTCACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGA----CTGGGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------GAGCCACAGCAGCTCCCAGAGCTGGAGCC------------------------ACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTG----GATATTTTGGATGTACTTGGGACACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGAA

a score=9251
s chr3            92750646 385 + 160039680 cagccactgctgccaccactgctgccacagc---agccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTCAGGAGCTGTGAGAGA
s HiC_scaffold_1 138474316 316 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAG-----ACTGCAGACCCTGACACCATCAC------AGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAG------------------------GGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTG----GGAACCTGGAGAGA

a score=9479
s chr3            92750651 357 + 160039680 actgctgccaccactgctgccacagcagccactgctgcca--cagcag-ccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGT
s HiC_scaffold_1 138439680 300 - 233722169 ACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAGACCACTGTCGCCATCAC------AGGAGTCTGATCTCCAGAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAG---------CAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGC------------GGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGT

a score=9463
s chr3            92750654 350 + 160039680 gctgccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138633191 293 - 233722169 GCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATC---ACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTGGAGCTG------AGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------------------------------GGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=9003
s chr3            92750658 373 + 160039680 ccaccactgctgccacagcagccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTCAGGAGCTGTGAGAGA
s HiC_scaffold_1 138613661 311 - 233722169 CCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATC---ACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTGGAGCTG------AGGCCACCGCAGCC-Ccagagcagggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGGAG------------------------------------GGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG-TGCG---GTCAGGGAACCTGGAGAGA

a score=11830
s chr3            92750664 366 + 160039680 ctgctgccacagcagcc-----actgctgccacagcagccactgctgccaccactgctacagcATCC-----AGAGCTGT------------GACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCC------------------------ACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGG---AGGGCACTTTGGGGTCTG-ACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATC-TCAGCTGTGGGTGTTCAGGAGCTGTGAGAG
s HiC_scaffold_1 138154332 393 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--------TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAGGCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAG

a score=12112
s chr3            92750666 270 + 160039680 gctgccacagcagccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGG---AGGGCACTTTGGGGT
s HiC_scaffold_1 138196623 266 - 233722169 GCTACTTCCTCATCCACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGATGT

a score=12630
s chr3            92750673 343 + 160039680 cagcagccactgctgccacagcagccactgctgccaccactg---------ctacagcATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 138408318 330 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGG-----------AAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12581
s chr3            92750673 343 + 160039680 cagcagccactgctgccacagcagccactgctgccaccactg---------ctacagcATCCAGAG---------CTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTGTTC
s HiC_scaffold_1 138368923 330 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTG--GAAGAGA----CTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=15306
s chr3            92750673 331 + 160039680 cagcagccactgctgccacagcagccactgctgccaccactg---------ctacagcATCCAG-AGCT--GTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGGGGC------------ACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138333239 343 - 233722169 CAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=20076
s chr3            92750675 529 + 160039680 gcagccactgctgccacagcagccactgctgcc--accactg-ctacagcATCCAGAGCTGTGACGATGGCGACGAAGAGATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC-----TGTGGGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCA------GACGGCAGG---CACTGTGGTAACCTGATCAATGCTGGCCCCACAAAAGCATTAGTGATCATCATAGAAACAAGATTCATAGTCATTTCATTT---ATACTATAGTCAGAATGAAACATCCTGTTGATCTTGTATTTAAATATCAGAAATCT--ATGCACATGAAA
s HiC_scaffold_1 138180384 515 - 233722169 GCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGATT-CTCTTAGCATCACTTGAGC------------CATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACC--------ATCACATTTATCTCTCTGAATTCTACATGCACATAGAA

a score=9806
s chr3            92750751 259 + 160039680 GATCTGCGGGGTCTGTGGTGGCTCAAGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACAT---TTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGG
s HiC_scaffold_1 138528502 247 - 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTGAG----CAACAGCAGGAAGAGCCTGGAGATCAGCAGG-----------GTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAG

a score=3652
s chr3            92750801 172 + 160039680 GCAGCAGCCACCAGAGCTACAGCAGCCTCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGG----GCACTTGGGAGGACATTTAGGGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCAC
s HiC_scaffold_1 138377705 147 - 233722169 GCAACAGCCACCA------------CCCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCT-------------GGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAAC---ACACTTTGT-GGATATTTTGGATGTACTTGGGAC

a score=4702
s chr3            92750867 137 + 160039680 ACAGCAGGAAGACAC---AGGGGGGCACTTGGGAGGACATTTAG---------GGGGGCATTTTGGAGGGCACTTTGGGGTCTGACACTTGGGAGGGCACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138112496 146 - 233722169 ACAGAAGGAGGAGGCTGGAGGGGAGCCAGAAGGGGGACATGAAGAAGGAGCTTGTGGGCACTGAGGGTGGCAATCAAGTA---GACATTTTGGGGGGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCTTGG

a score=26577
s chr3            92763187 743 + 160039680 AAGAAAAACAATGGTCTTGTCAGGAATGGTTGTCAAGGTTTTTTTAATT-----TATAACAAAGGGT----AAAATGGTCATTGTCATTTCATGAGGACAATGCAGAACATTTCCCAGGAG-ATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAA----TCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccac------------agcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCT---GTGACGATGGCGA---CGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---agggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCAGACACCAG-GCACTGTGATAACCTGATCAATGCTGGCCCCA
s HiC_scaffold_1 138197273 727 - 233722169 AAAAGAAACAAGAGGCTGGTGAGGCTCTGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATT---------TGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAG-GGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCC------------------------------------------GGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCA--CTGAACACTGATTACTTCA

a score=11550
s chr3            92763249 642 + 160039680 AAAATGGTCATTGTCATTTCATGAGGACAAT-------GCAGAACATT------------TCCCAGG-----AGATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAATCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGAGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCAG
s HiC_scaffold_1 138135344 526 - 233722169 AAAATAGTCAGTGTCAGAATCAGTAGACAAGTTTTTTGGGAGAGCATTCTGGCCCCAGGATCCCAGGGCAAAAGCATTCATTATAATAGAGCTCAGATCCAGGAA--AAGGAAGATAAGGAGA---------------AACTATCTGACCACTTGCTTCATTCAAGTCTTCTTATTTAAGT--TCAGAGTCCACTTCAACAGCAGCCTCCAGATTGTAGGCT---------------------GCCACCCTCTCTATAGCAGCTG--------------GAGACCCCAGCAGCTG--------------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG--------------------------------------------------------ACC----------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=10131
s chr3            92763272 576 + 160039680 AGGACAATGCAGAACATTTCCCAGGAGATTTCAGCAACTCAGAGGGCAGAACAA---GGAGGGAAGCAGGAGGA----GAGGACATCGGGCAATGGATAATCTTCTGAGCATGTG----CTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138633042 442 - 233722169 AGAACAGTGGGTGAGAACCCCCAACAG-TACCTGAAACAGACAGGGCAGGACACATTGGAAAGATGCATAAAGATGAAGCGGTTCCTCGGCTCCGGGGATTCTTGT-AGCCTCTGAAATCTCTTCTCACAGCATCTGG--------------ATCCAGGTCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGC--------------------CCCCAG-----------------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------------------------------GGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=25154
s chr3            92763281 564 + 160039680 CAGAACATTTCCCAGGAG-ATTTCAGCAACTCAGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAA----TCTTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccac------------agcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCT---GTGACGATGGCGA---CGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---agggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138257990 549 - 233722169 CATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAG-GGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCC------------------------------------------GGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=9652
s chr3            92763312 571 + 160039680 AGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATCGGGCAATGGATAATC----TTCTGAGCATGTGCTCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgcca---cagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagcca-----ctgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggagggcatttaggggggcattttggagggcactttgggg----tctg---gcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG----CTGTGAGTGTTCAGGAGCTGTGAGAGAATCATGGA
s HiC_scaffold_1 138377507 434 - 233722169 AGAGAGTGTAATGAGGAAAGCATCAGGAGGTAA------TGGGCTCTGGATCATCCATTTTCTCAATA---GCTCCTCCTG------------------------ACCCAGCTCAGCAGCAGCCTC-AGA------------GccagggcagcagccagagcctCCACTGGGGTCACACT------------------------CACAGCAGTCAGGAGCCTGGTGCTT--------------------GCAGTGGTGTTGG-----AAGAGACT----GGGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCC------------------------ACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTGGGA---CACTTTGGA-AGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGAA

a score=14820
s chr3            92763381 468 + 160039680 TCCTCCTGCACCATTTGTTTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagcca--ctgctgcc-actgctgccacagcagccgctgctgccaccactg---ctgccacag---cagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138300124 404 - 233722169 TTCTTCAGTGCTGTTTCTTTGTGCTTCTTATGGCCC-GGCCATCAGTAGCCTCCAGA------GCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTT------------------CCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAG---GTAGAG--------------------------------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGG---------------GAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=13365
s chr3            92763401 459 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTC
s HiC_scaffold_1 138408295 353 - 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACT-----CACAGCAGTC-----------------------AGGAGCC--TGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAG--------------------GAAGACACCAG---------------AGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12579
s chr3            92763401 459 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAG--GGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTC
s HiC_scaffold_1 138368900 353 - 233722169 GAGCTCTTCCTGGGCCAGCTTAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTGGGCTCACACT-----CACAGCAGTC-----------------------AGGAGCC--TGGTGTC-----------------------TATGGCGGTGGTG--GAAGAGACT----GGGCCTGTGGTGGCTCAAGCAGCAGCCACCA------------------------------------CCCCCAGAGCTTGAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=9090
s chr3            92763401 474 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTCAGGAGCTGTGAGAGA
s HiC_scaffold_1 138474301 331 - 233722169 GAAATCTCTCT-----ATGTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGT---------------------CCCAG--------------------------ACTGCAGACCCTGACACCATCAC------AGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcag--------------gaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAG------------------------------------GGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTG----GGAACCTGGAGAGA

a score=21987
s chr3            92763405 452 + 160039680 TCTTCCTCACCCAGGTCAGCAGC---------------------------AGCCCCCAGActgctggctactgccac------------agcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGAC------GAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTG
s HiC_scaffold_1 138728642 434 - 233722169 TCCTTGTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAG------------------------CCCAGGCTACAGCAGGAAGACGCTGG---------------------AGGTGGGCA------GGGGGACTTGGGTG---GGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATG

a score=16151
s chr3            92763408 440 + 160039680 TCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactg--ctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138333223 359 - 233722169 TTCTGGCCCAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACT-----CACAGCAGTC-----------------------AGGAGCC--TGGTGTC-----------------------TGTGGTGGTAGGGA--AAGAG----GCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=9974
s chr3            92763413 435 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138647036 306 - 233722169 ATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGC--------------------CCCCAG-----------------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------------------------------GGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=8938
s chr3            92763413 462 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTGTTCAGGAGCTGTGAGAGA
s HiC_scaffold_1 138613644 328 - 233722169 ATCTAGATCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAG-------------------------------------ACTACCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------------------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGGAG------------------------------------GGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG-TGCG---GTCAGGGAACCTGGAGAGA

a score=11892
s chr3            92763416 364 + 160039680 CAGGTCAGCAGC-AGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---agggcactttggggt
s HiC_scaffold_1 138196594 295 - 233722169 CACATCAGCAATTAGCCTCCAGATTGCTGGCTACTTCCTCATC---------------------CACAGCAGCTGGAGCAGCC-TGAGGGCTG--------------------------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTG------------------------AAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGATGT

a score=7023
s chr3            92763420 385 + 160039680 TCAGCAGCAGCCCCCAGActgctg---gctactgccacagcagccactgctgccact-----gctgccacagcagcc-----gctgctgccaccactgc----tgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCC------ACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttagg---ggggcattttggagggcactttggggtctggcacttgggagggcacttggca
s HiC_scaffold_1 138154337 329 - 233722169 TTAACAACAGCCTCCAGACTGCTGCTTGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCT--GTAGCCCTCAGGCAGTGGCAACTATAGCATTGTGGTGGTTCAGGCA--GTAGCCACCACT----------CCAGAGCTG---------------------------------------------CAGCAGCC------AACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGA---CATTGCAGCAAGAAGAGAC----------TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAAT---ACACTTGGGA-GGTGTTTGGCA

a score=16854
s chr3            92763420 482 + 160039680 TCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGAGTGTTCAGGAGCTGTGAGAGAATCATGGATATGTCAGACACCAGGCAC
s HiC_scaffold_1 138145833 384 - 233722169 TCAGCAACAGCCCC-AGATTGCTGGCTACTCCCCC---------------------CTCCACAGCAGCTGGAGCC-CCTCGAGGGCTG--------------------------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCC------------------CCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTG------------------------ACACTGCAGCAGGAAGAGACTGGGGGGCAC------------TTAGGCGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATGCAGGAAAC

a score=19962
s chr3            92763420 521 + 160039680 TCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC-TGTGAGT----GTTCAGGAGCTGTGAGAGAATCATGGATATGTCAGAC----ACCA-------------GGCACTGTGATAACCTGATCAATGCTGGCCCCACAAAAGCCTTA
s HiC_scaffold_1 138180360 456 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCC---------------------CTCCACAGCAGCTggagcctcc-cgagggctg--------------------------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGC------------------------TGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGATTCTCTTAGCATCACTTGAGCCATAGAAACATCA

a score=7957
s chr3            92763433 401 + 160039680 CCAGActgctggctactgccacagcagccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAG-AGCT--GTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACC--CCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACA-CAGGGgggcacttggga--gggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcaggg-GCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138408273 338 - 233722169 CTAGACTACTGGATCC--CTTCAAGAGCTCTTCCTGGGCCAGCT-CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGG-GCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCG---------------------GTGGTGGAAGAGACTG-GGCCTGTGGTGGCTCAG----GCAGCAGCCACCA------------TCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCC------------------------ACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGA-GGTGGCTGGCACTGCTG

a score=8865
s chr3            92763459 243 + 160039680 gccactgctgccactgctgccacagcagccgctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAG---AGATCTGTGGGGTCTGTGGTGGCTCAGA------CAGCAGCCTCCACC----CCCAGAACTGCAGCAGCCACCA------GAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGA
s HiC_scaffold_1 138728708 243 - 233722169 gccactgccaccaccactgctgcAGCAGccactgc---caccactgctgctaCAGCAGCTACTG------CTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAG----GCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTG------CAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGA

a score=14301
s chr3            92763472 402 + 160039680 ctgctgccacagcagcc-----gctgctgccaccactgctgccacagcagccactgttgccacc-----actg-ctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---agggcactttggggtctg-gcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATC-TCAGCTGTGAGTGTTCAGGAGCTGTGAGAG
s HiC_scaffold_1 138154332 393 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAGG-------CAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAG

a score=8951
s chr3            92763489 345 + 160039680 gctgctgccaccactgctgccacagcagccactgttgccaccactgctacagcACCCAGAGCTGTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACC--------CCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACA-CAGGGgggcacttggga--gggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcaggg-GCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138333238 318 - 233722169 GCAGCAGCCCCCAGAGCTatggcagcagcca---gagcccCCACTGGGCTCACACTCACAGCAGTCAGGAG---------------CCTGGTGTCTGTGGTGGTAGGGAAAG-AGGCTGGGCCTGTGGTGGCTCAG----GCAGCAGCCACCA------------CCCCCAGAACTGCAGCAGCCCCCACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGG-GGCTGGTACTGCTG

a score=7337
s chr3            92763522 312 + 160039680 gttgccaccactgctacagcACCCAGAGCT------GTGACGATGGCGACGAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTG-------CAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcactt---gggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138145856 276 - 233722169 GCTACTCCCCCCTCCACAGCAGCTGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGT-------GGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCA------------CCCCCAGAGCTG------CAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCT---GACACTGCAG-------CAGGAAGAGACT--------------GGGGGGCACTTAGGCGGACACTTTGGGG---GGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTG

a score=8396
s chr3            92763566 290 + 160039680 GAAGAGATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttggga--------gggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG----CTGTGAGT
s HiC_scaffold_1 138417148 233 - 233722169 GAAGAGACT----GGGCCTGtggtggctggggcagcagtcACCACCCCCAGAACTA------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAG---------------------CAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATGTG----GACACTTGGGATGCAATTGGGGCACTTTGGA-AGGCTTGGCA---TGATTGGTTTTACTGGTAGGACATCTTGGAGTTCAGTGAGT

a score=8677
s chr3            92763571 280 + 160039680 GATCTGTGGGGTCTGTGGTGGCTCAGACAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggca---tttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTG
s HiC_scaffold_1 138528502 244 - 233722169 GAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCT-GAGCAACAGCAG---GAAGAGCCTGGAGATCAGCA-----------------------------------GGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTG

a score=5567
s chr3            92763654 160 + 160039680 GCTGGAGCCACAG---CAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGG
s HiC_scaffold_1 138417169 150 - 233722169 gctggggcagcagtcACCACCCCCAGAACTAGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAG---------AGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAG---GGCAC-TATGTGGACACTTGGGATGCAATTGG

a score=3386
s chr3            92763654 163 + 160039680 GCTGGAGCCACAGCAGCC---CCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggcagggGCTTGGCAC
s HiC_scaffold_1 138377699 153 - 233722169 GCTCAGGCAACAGCCACCACCCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCTGGAG---CCACAGCAGGA------AGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAAC---ACACTTTGT-GGATATTTTGGATGTACTTGGGAC

a score=8259
s chr3            92764955 275 + 160039680 GCTCTAGTCCAG---CTCCACTGTGCAGTCTCTGCCCTTAGCTCCAGTAAACACTTACCAAGATGAAGGGTAGCACAAGATCTGTGGGTATCTCAGTCAGCCAGTGAATGGATGGAAGCAGCCTGTCCATCGGTCCTTTTATTCTGAGCCTGAGCTCTA-TCCCAGCCTGTGAGACAGTGGCTGGAGATGGGATTCCATGCCTACTGACACCCACATGGTTTTCTAACAGATCATTACAGGATATTCCTCATCAGCTTTCA--TCTTTGAGGGCAGGCTAG
s HiC_scaffold_1 138198885 275 - 233722169 GCTCTGGTCTGAGCATACCTCTGAGAAGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAG----AGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGA-CTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCCATTCACTGAGCTCAGAGTAG

a score=25615
s chr3            92777278 591 + 160039680 CAGAACATTTCCCAGGAG-ATTTCAGCAAATCAGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATTGGGCAATGGAGAA----TCTTCTGAGCATGTGCTCCTCCTGCACTATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAG------GGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---agggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138257990 549 - 233722169 CATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAG-GGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGC------------------CACTACCACCGCCACTGCTGCAGCAGCCACC---GCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCT------------------------------------CCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=28296
s chr3            92777307 1750 + 160039680 TCAGAGGGCAGAACAAGGAGGGAAGCAGGAGGAGAGGACATTGGGCAATGGAGAA----TCTTCTGAGCATGTGCTCCTCCTGCACTATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAG------GGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggag---ggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATTCAGGAGCTGTGAAAGAATCATCGATATGTTAGATATCAG-GCACTGTGGTAACCTGAACATCCTGGCCTCACAGAAGCATTAGTGATCATCCTAGAAACACCATTCATCGTCATTTCATTT-GAAATGTACTCAGATTGTCAC--ATTCTGTTCATCCTGTCTTTAAA---TATCAGAAATCTATGCACATGAGATACAGTTATCTAAAATCCAGAAGCACTAAATAAATATCTGCTGACACTTAGATAGGTTTGCTATTCTTAGTCTTCACACATGCAAATGTATGTTCTATTTCTAAGATAAATAGCTGTAAAAGAGATGACA--GTCGTAAACAGAAGATTAGCTTAAGGTTAGTATT-----TGAAA--------AGACCTTCTAGCACATTTAT-----GGAGTAAGCTCAGCACATGACA--------GAAAAATATGTAAACTCTTTTCATTCCCCCTAGGAACTGATGCCCATGCTGTGAGATGAGAGGTCAGATGTATCCAAACTAC--------------CATCTTCTCTGGCTAAGGGTAA---------AAAGATC--AGTATCACA----------CTGGTGGTGTCCTGTTGATCAGAGAAATATGTGAACAGATCCCAGAAACCGGACTACTTTCCCAAG-----------CCAAACTGAAACCCTGT------TAACTA-------------------------TTTGCTCTA---------------------TTTTTTCAGTGCCAGGGAAGGGAAACATTTTCATCAAAATCAAATT----------ACTCCTTGTAA-CCACTCTAGATGCACAGT--------TATCTATGCTGAATATACCATCCTCAGCAGTCCTAGAAATCGAAGGTACATAGTATTCGCCAGAGTCAAAGTACCCA-------AAGCTTTTCAGATTCTCATAGTATCAAGGCTGTGGCTAGTTATTGTCACAGAGAACATTGTCTCATCCCTCAGATTTCACCA-TGTTTTCTGCTATATCAATGTGGTCAGAAGGGGGAAGGATACTTCCCAGAGTCTATCATGGACTAGTCCAGGT---CCACTCTGAAGTCTCTGCCCTTACCTCCAGGAAACACTTACCAAGATGAAGGGTAGCACAAGATCTGTCAGTATCTCAGTCAGAGAGTGGATGGAAGGACTCTGTCCATCAGTCCTTTTATTCTGAACCTGAGCTCTA-TCCCAGCCTGTGAGACAGTCACTGGAGATGGGATGGCATGCCTACTCATACCCAGATGGTTTTGTGACAGATCATGTCAAGATATTCCTCATCAGCATTCCACTTTGTAAGC
s HiC_scaffold_1 138197397 1754 - 233722169 TCAGAGCCTAGGACAATGAAGACAGATAAAGGAG-GGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGC------------------CACTACCACCGCCACTGCTGCAGCAGCCACC---GCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGA------------------------------------GGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTACACTTTAGCA--CTGAACAC----------------------TGATTACTTCAG---CTCAATTTCTGGTTCTCTCATTTTGAAAGTCAGGAAAATTACCTCTGACTTTTTTTAATCCCTCTTTGTAGTCTGTTAGGT-CCTTTccttctgagtt----ttattttaaagct-----caTTTGAGAAAT---TGTCAAGCCATA-----------------TAATCTCCAAACACAAGAA-GAGTGACTGTTAATTAAAATCTCTAAGTGTAGGAGAAATGACACAGAAGTAAAC------TTTGTCTAGTGTTAGCATTCATTCTGACACATCACCAAGATTTCTGAAAATATCCATTACAGGGAGCAGTTTGGGTATGAAGcactctttaagaaaaaaaaaaaaagtatttccttttgga--agaaatttgaaaacattttg-gttTTGAAGAATATGAAGAACTGTAACTACAAAGCAACTTGCAGTAACTTGTCCCAACAAAGTTAACATATGAATGAAGAACGTAAAATCAAAAGAAGTGAATTTGTTGGCCTAATGTT-ATCAGTGCATTAT-TGATCAGTTTCTAGTTTCCTGACTACTAATCCAAGGCTCTGTTCCTCCGAGCAATCTTCTTGTGAGGTCTAACCAGACCCACAGGTGTTCTTATGTCTTTCTTCCTCTAAGTACCAATGTCCTCAGcactttttttctaaaactagACATGGctatatttcca---aaattatatttcCATCACATACTCATGTTAGGATAATCTAGTGGC-CAGTATTTTTATTACCTGCAATCGCAAAAACATCATCAGCTACTATA---ATCAAT------TTGGTTTCTCTAAAACTGTAGCACACAGCTCTAAAAGTCTCCCAGTTGCTCTTGATCTTA---CTCTACCTA-------TCAC-----------CCTCTGCTTTCAAATTTTCTTGCTCCTCTCTTCCTTGCCAA------------GCACAATTCAAGTTCCTGGGTTTTCGTATGCTCTGGTCTGAGCATACCTCTGAGAAGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTG-ACTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCTC-CACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCCATTCACTGAGC

a score=14098
s chr3            92777378 495 + 160039680 TCCTCCTGCACTATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccaccactgccacca--ctgctgcc-acagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacag---cagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138300124 404 - 233722169 TTCTTCAGTGCTGTTTCTTTGTGCTTCTTATGGCCC-GGCCATCAGTAGCCTCCAGA------------------GCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGAC------------------TGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTT------------------------------------CCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAGGT-----------AGAGACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGGG---AACACTTGGGA------------GGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=22423
s chr3            92777402 471 + 160039680 TCTTCCTCACCCAGGTCAGCAGC---------------------------AGCCCCCAGActgctggctactgccacagcagccaccactgccaccactgctgccacagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGAC------GGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138728642 426 - 233722169 TCCTTGTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggc------------------cactgccaccaccactgctgcAGCAGccact---gccaccactgctgctaCAGCAGCTACTGCTAC---------TGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCC------------------CCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGGT---------GGGCA------GGGGGACTTGGGTGGGCATTTGGGGGT---GCACTTAGGA------------GGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGC

a score=6917
s chr3            92777465 362 + 160039680 gccaccact-gctgccacagcagccactactgccacca--ctactgcc-acagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttgg
s HiC_scaffold_1 138300161 321 - 233722169 GCCATCAGTAGCCTCCAGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGC---------CACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGG------------GGCCTGTGGTGGCT--------------------CAGG----CAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGG---AGCACTTAGGGGAACACTTGG

a score=12120
s chr3            92777479 325 + 160039680 cacagcagccactactgccacca--ctactgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---agggcactttggggt
s HiC_scaffold_1 138196594 295 - 233722169 CACATCAGCAATTA--GCCTCCAGATTGCTG--------GCTACTTCCTCATCCACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGATGT

a score=9083
s chr3            92777481 391 + 160039680 cagcagccactactgccaccactactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACAC---AGGGgggcacttgggagggcatttaggggggcattttggagggcactttgggg----tctg---gcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138377564 338 - 233722169 CAATAGCTCCTCCTGACCCAGCT----CAGCAGCAGCCTCAGA-GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTG------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTGGGA---CACTTTG-GAAGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=11293
s chr3            92777502 396 + 160039680 ctactgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccacc-----actg-ctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAG--------GAAGACA------CAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcac------------ttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATC-TCAGCTGTGGGTATTCAGGAGCTGTGAAAG
s HiC_scaffold_1 138154332 393 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-------GCAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-------------------AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAG

a score=11067
s chr3            92777502 413 + 160039680 ctactgccacagcagccact---------gctgccaccactgctgccacagcagccactgctgccacca--ctgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGGGTATTCAGGAGCTGTGAAAGAATCATCGATATGTTAG
s HiC_scaffold_1 138135515 355 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCT---ATAGCAGCTGGAGACCCCAGCAGCTGGCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTG------------------------------------------------------------CAGCAGCCCCCAGAACTGACCCTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=16180
s chr3            92777505 450 + 160039680 ctgccacagcagcc----actgctg-ccaccactgctgccacagcagccactgctgccaccact---------gctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGGGTATTCAGGAGCTGTGAAAGAATCATCGATATGTTAGATATCAGGCACTGTGGTAACCTGAACATCCTGGCCTCACA
s HiC_scaffold_1 138145831 405 - 233722169 CTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGC------TGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGC------------------------------------AGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCAC------------TTAGGCGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGA----------TGCAGGAAACAGGCCACCCTGCCCGCTCA

a score=8267
s chr3            92777511 361 + 160039680 cagcagccactgctgccaccactgctgccacagcagcca------ctgctgccaccactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138613655 294 - 233722169 CAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTGGAGCTG------------------------AGGCCACCGCAGCCCc-agagcagggagcagagcagg-----------aggaggcagcaggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGGAG------------------------------------GGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG

a score=12805
s chr3            92777511 373 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAG-AGCT--GTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATTC
s HiC_scaffold_1 138408318 330 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAG-----------GAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12200
s chr3            92777511 373 + 160039680 cagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAG-AGCT--GTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAG--GGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGGGTATTC
s HiC_scaffold_1 138368923 330 - 233722169 CAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT--CACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAG-----------GAAGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=21609
s chr3            92777511 1535 + 160039680 cagcagcc-----actgctg-ccaccactgctgccacagcagccactgctgcc--accactg-ctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC-----TGTGGGTATTCAGGAGCTGTGAAAGAATCATCGATATGTTAGATAT------CAGG---CACTGTGGTAACCTGAACATCCTGGCCTCACAGAAGCATTAGTGATCATCCTAGAAACACCATTCATCGTCATTTCATTTGAAATG-----------TACTCAGATTGTCACAT-----TCTGTTCATCCTGTCTTTAAATATCAGAAATCTATGCACATGA---GATACAGTTATCTAAAATCCAGAAGC--ACTAAA---TAAATATCTGCTGACACTTA-------GATAGGTTTG------------------------CTATTCTTAGTCTTCACACATGCAAATGTATGTTCTATTTCTAAGATAAATAGCTGTAAAAGAGATGACA------------GTCGTAAAC-AGAAGATTAGCTTA------AGGTTAGTATTTGAAAAGACCTTCTAGCACATTTATGG--AGTAAGCTCAGCACATGACAGAAAAATATGTAAACTCTTTTCATTCCC-----CCTAGGAACTGATGCCCATGCTGT---GAGATG----------AGAGGTCAGATGTATCCAAACTACCATCTTCTCTGGCTAAGGGTAAAAAGAT---CAGTATCACACTGGTGGTGTCCT-GTTGATCAGAGAAATATGTGAACAGATCCCAGAAACC-----GGACTACTTTCCCAAGCCAAACTGAAACCCTGTTAACTATTTGCTCTATTTTTTCAGTGCCAGGGA-AGGGAAACATTTTCA------------------TCAAAATCAAATTACTCCTTGTAACC---ACTCTAGATGCACAGTTATCTATGCTGAATATACCATCCTCAGCAGTCCTAGAAATCGAAGGTACATAGTATTCGCCAGAGTCAAAGTACCCAAAGC-TTTTCAGATTCTCATAGTATCAAGGCTGTGGCTAGTTATTGTCACAGAGAACATTG------TCTCATCCCTCAGATTTCACCATGTTTTCTGCTATATCAATGTGGTCAGAAGGGGGAAGGATACTTCCCAGAGTCTATCATGGACTAGTCCAGGTCCACTCTGAAGTCTCTGCCCTTACCTCCAGGAAACACTTACCAAGATGAAGGGTAGCACAAGATCTGTCAGTATCTCAGTCAGAGAGTGGATGGAAGGACTCTGTCCATCAGTCCTTTTATTCTGAACCTGAGCTCTATCCCAGCCTGTGAGACAGTCACTGGAGATGGGATGGCATGCCTACTCATACCCAGATGGTTTTGTGACAGATCATGTCAAGATATTCCTCATCAGCATTCC
s HiC_scaffold_1 138180364 1530 - 233722169 CAGCAACCTCCAGACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGC------------------AGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACAGGTCACATTTGGGCACTCTGATTCTCTTAGCATCACTTGAGC------------CATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATCTCTCTGAATTCTACATGCACAT---AGAAGT---TGCATAAGAATTGACATTGTTATACAA----CAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAACATCTTGAGACTAAAAT---TGCCCAAtttcagggaaaatattttttaaaagaaaaagcatcaTTTCTTCTTGTCATAACCTATAAGATGATCTTATCATGCAGGTCAGGGTTGCTAAGGA---TCTAGAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAACTTATCAAATCCTGCAGACGTGGGGCTTGAATCTCAGGCAGTCCAGAGCTAGGTTCAGTCCAGAGCTCAGATGTCCTCAGTTCACAG------CTAACTGGGGTTTATAAGTTAGCAGGTCTCAGACATGTGGTATCCTAATTAACTTGAGAAATA--CCAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCC---CAGAAAAGCACTTGGTT-----TTCTCTTCCCTTGCTGTCAGGAACAGGGATGTATTCTCAGAGGTATACTCCATCCTGTCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTC-----------TTGTCC-TGATGAGCCTACTGCACTCAG-------AGAAAT----------TTGTTCTCTCCAGA--------ACCCaaggcatatacatat----atattttc----cctCGTTTCTTTACTGCTGCAGAG--CCTTGTTTTGTTCCCATCTTTTAGTCTTCCCTAAATTCTCCTCC------------TCTGAAAGG-------TACCCCTC----TCAACTGAGGTCCCTTTCCAGCCACCTCT------CCTACTGCTATTTTCAATGGAGACTTACCAGTGTCACAGG-AGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGTGCCCTTTTATTGGGCCCATGAGCTCTTCTTTAGC--ATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATGATATTGTGTAAAATGGTGAC----TGTTTCTCACCTATCTTCC

a score=8709
s chr3            92777514 385 + 160039680 cagccactgctgccaccactgctgccacagc---agcc----actgctgccac---cactgctacagcATCCAGAGCTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC----TGTGGGTATTCAG---GAGCTGTGAAAGA
s HiC_scaffold_1 138474316 327 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------------------------------------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAG------------------------GGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTGGGAACCTGGAGAGAGCAAGGAAAAA

a score=15414
s chr3            92777522 350 + 160039680 gctgccaccactgctgccacagcagccactgctgccac------cactgctacagcATCCAGAG---------CTGTGGCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGA---CACAGGGgggc------------acttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138333241 341 - 233722169 GCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGG------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------------------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=8535
s chr3            92777537 335 + 160039680 gccacagcagccactgctgccaccactgctacagcATCCAGAGCTGTG---------------GCGATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGG--gggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138398589 285 - 233722169 GCCATGGCAGCAACCAGAGTCCCCACTGGGCTCACACTTAGAGCAGTTAGGAGCTTAGGGCCTGCAGTAGGAGCAGAGGA---TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAG-------------------------------------CCCCAGAGCTGAAGCCACAGCAG-----------GAAAATACTGGAGGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAGGGCACTTCAGTGGGTATTTTGGG----TGCACTTGAGA------------GGGGACTGGCactgctgctgcttttgctgacAGGATGTCTTAG

a score=8168
s chr3            92777541 331 + 160039680 cagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTGTGGCG------ATGGCGACGGAGGGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGA---CACAGGGgggcacttgggagggcatttaggggggcattttggagggcactttggggtctggcacttggga--------gggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138417081 288 - 233722169 CAGCAGCCAAGTCCCCACTGGACTCACACTCACAGTAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTG---GGCCTGtggtggctggggcagcagtcACCACCCCCAGAACTA------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTATGTG----GACACTTGGGATGCAATTGGGGCACTTTG-GAAGGCTTGGCA---TGATTGGTTTTACTGGTAGGACATCTTGG

a score=8781
s chr3            92777600 278 + 160039680 GGATCTGCGGGGTCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAGCCACCAGAGCTACAGCAGCCACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggca---tttaggggggcattttggagggcactttggggtctggcacttgggagggcacttggCTGGGGCCTGACACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGG
s HiC_scaffold_1 138528501 248 - 233722169 GGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCT-------------------GAGCAACAGCAG---GAAGAGCCT-----------GGAGATCAGCAGGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAG

a score=8312
s chr3            92777647 172 + 160039680 AACTGCAGCAGCCACCAGAGCTACAGCAGCC------ACCAGAGCTACAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAAGCTACAGCAGGAAGACACAGGGgggcacttgggagggcatttaggggggcattttgg---------------agggcactttggggtctggcacttgggagg
s HiC_scaffold_1 138154468 189 - 233722169 AGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAAT---ACACTTGGGAGG

a score=24699
s chr3            92788931 540 + 160039680 TCAGCACCTCAGTGGGCAGGGCAAGGAGGGAAGC---AGGAGGAGAGGACATCACGAAATGGAGAGTCTTCTGAACGTGTTCTCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccac------------agcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAG------AGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAG---GGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138258012 527 - 233722169 TCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCT------------------------------------CCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=26110
s chr3            92788931 588 + 160039680 TCAGCACCTCAGTGGGCAGGGCAAGGAGGGAAGC---AGGAGGAGAGGACATCACGAAATGGAGAGTCTTCTGAACGTGTTCTCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGC---------CCCCAGActgctggctactgccac------------agcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAG------AGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAG---GGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTCAGGAGCTGTGAGAGAATCACACATTTGTCAGAC
s HiC_scaffold_1 138197389 575 - 233722169 TCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgc---aGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCT------------------------------------CCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAG---GGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGAC

a score=14375
s chr3            92789010 465 + 160039680 TCCTCCTGCACCATTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcagccactgctgccaccactg---ctgccacag---cagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138300124 404 - 233722169 TTCTTCAGTGCTGTTTCTTTGTGCTTCTTATGGCCC-GGCCATCAGTAGCCTCCAGA------GCAACAGCCAGAGCCACCAGACTGCTGTC--TATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTG------------GAGCTACAGCAG---GTAGAG--------------------------------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGG---------------GAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=8507
s chr3            92789023 451 + 160039680 TTTGTCTGAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138474294 315 - 233722169 TTCTTCAGAAATCTCTCT-----ATGTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGT------------------------CCCAG--------------------------ACTGCAGACCCTGACACCATCAC------AGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGGGATG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcagg------------cagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAG

a score=9588
s chr3            92789027 453 + 160039680 TCTGAAGTCTTC---CTCACC---------CAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagcca--ctgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGA
s HiC_scaffold_1 138439643 339 - 233722169 TCTGAAATCTTTTGTCTCAGCATCAGATTTCAGGTCAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAG--ACCACTGTCGCCAT---------------------------CACAGGAGTC--TGAT----------CTCCAGAGCCTGCACCTGTGG---------------GACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAG---------CAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGC------------GGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAA

a score=9660
s chr3            92789027 447 + 160039680 TCTGAAGTCT-TCCTCAC-----------CCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138633151 333 - 233722169 TCTGAAATCTCTTCTCACAGCATCTGGATCCAGGTCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGC-----------------------CCCCAG-----------------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=12722
s chr3            92789030 456 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT--GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTC
s HiC_scaffold_1 138408295 353 - 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGA------------GCcatggcagcagccagagcccCCACTGGGCTCACACT------------------------CACAGCAGTCA--------------------------GGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGG-----------AAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=12147
s chr3            92789030 456 + 160039680 GAAGTCTTCCTCACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT--GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGG--GGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTGTGAGTATTC
s HiC_scaffold_1 138368900 353 - 233722169 GAGCTCTTCCTGGGCCAGCTTAGCAGCAGCCCCCAGA------------GCcatggcagcagccagagcccCCATTGGGCTCACACT------------------------CACAGCAGTCA--------------------------GGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT-GTTGTGACTTTTC

a score=21857
s chr3            92789034 441 + 160039680 TCTTCCTCACCCAGGTCAGCAGC---------------------------AGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT---GTGACGATG---GCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138728642 426 - 233722169 TCCTTGTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCC------------------TCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGGC----------AGGGGGACTTGGGTGGGCATTTGGGGGT---------------GCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGC

a score=9728
s chr3            92789042 432 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138647036 306 - 233722169 ATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----CCACAGC--CTGCACCT---------------------GTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=8713
s chr3            92789042 432 + 160039680 ACCCAGGTCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138613644 305 - 233722169 ATCTAGATCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAG----------ACTACCG-----------ACCACTGTCACCAT------CACAGGAGTCTGAACT----CCGCAGC--CTGCACCT---------------------GTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCC---------------------------------------TCCCTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcag---------caggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGG------------AGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG

a score=11597
s chr3            92789045 384 + 160039680 CAGGTCAGCAGC-AGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGG
s HiC_scaffold_1 138196594 291 - 233722169 CACATCAGCAATTAGCCTCCAGATTGCTGGCTACTTCCTCATC------------------------CACAGCAGCTGG---------------------AGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTA------------GGGGGACACTTGGGAGAGCATTTTGG------------TGTAGGACCCTTGG

a score=24125
s chr3            92789049 1616 + 160039680 TCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT---GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGC-TGTGAGT----ATTCAGGAGCTGTGAGAGAATCACACATTTGTCAGA-------CACGGTGGCCCCCTAGGCCATACTGA-CCCCTTACCCTGCCCAGAACTGTAACTGATCATCATAGAAACA-CATCTATAATTATTTCATTTATAATATTCT---CAGATTGTTA---CATCCCGTTTATCATGGTTTTGGAATACCAGAAACAT----GAGCC-CATGAGATATGGTTACCTGAAATTCAGCAGCTGTAAAT--------AAATATCTAGTG----ACATTTAGG----AAATCTGTG----------------------CCATTCTAAATCCTCATACATGTGCCAATATATGTGCTATTTCAAAGATGACTAATTGTAAAGGATAGAATA---------------ATAATTTTTTAAAGGTACTTTTAGTGTAATGTCAGTATTTCATAGGACCTTCTAGAACTCTTAGGGAGTAAGCTCAGCCACTGACAGAAAAATATGTAAACCCTGTTCAAACCCCCA----TGGGA----------ACACAAGCCCCTGTTGGG---AGGCAAGAGGTCAGATGTATCCAGATTACCAACTGCTCAGGCT--AAGGGTGGCAAG-CTCAGAGTCATCCTGGTGGTGTCC-AATCGATCAGAGAAATGTATGAACAGA--------TCCTGGAAGCAGGATTCTCTTT--CTCATGACAAACTGAAATCCTGTTGCTCTTTCCTGACTCTAGCTCTTTACTGGCAGAGGGGGGAAACTTTATTCAGAAGCAAAGTCCCCCTAGAATCCTGTCTAGATGCA--CAGTTATTTGTGCTGAGTGTCCCATCCAAAGGGTTCCTATACACTGAAGGTATTTTGTGCTCTCCAGAGCT---AGAATATCCA---ATGTTTTCCAGTGTCTCGTTACCAAGGCTGTGGCTAGTGGCTGACAGTGCCACCATTGCCTTACCCCTCAGACTTCACCATGTTTTATGATCTATCAATATAGGTGCAAGGCTGACAGATCCTTCCCA------GTGCCTGTCCAGCTCTAGTATTGCATCACTCTTAAAGTCTCTGCCCTTACCTCCAGTAAACACTTACCAAGATGAAGGGTAGCACAAGATCTGTGGGTATCTCAGCCAGTGAGTGAATGGAAGCACCCTGTCCATCGGTCCTTTTATT------CTGACCCCAGCTT----GTGAGACAGTGGTTGGACATGACA----CACCCTCCTGACACCTACATAGTCATATCATTAAAGATGACCAGTTGTTTCTCCCCAGCCTTCTTCTATGATGTCCAGGCATAC
s HiC_scaffold_1 138180360 1554 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCC------------------------CTCCACAGCAGCTggagcctcc-------------------cgagggctg--------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGG---GACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCC------------------CCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACAG-GTCACATTTGGGCACTCTGATTCTCTTAGCATCACTTGAGC-------------CATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATC----TCTCTGAATTCTACATGCACATAGAAGTTGCATAAGAATTGAC--ATTGTTATACAACAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAA----CAT-CTTGAGACTAAAATTGCCCAAtttcagggaaaatattttttaaaagaaaaagcatcaTTTCTTCTTGTCATAACCTATAAGATGATCTTATCATGCAG-GTCAGGGTTGCTAAGGATC-TAGAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAACTTATCAAATCCTGCAGACGTGGGGCTTGAATCTCAGGCAGTCCAGAGCTAGGTTCAGTCCAGAGCTCAGATGTCCTCAGTTCACAGCTAACTGGGGTTTATAAGTTAGCAGGTCTCAGA--CAT----GTGGTATCCTAATTAACTTGAGAAA--TACCAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCCCA---------GAAAAGCACTTGGTTTTCTCT--------TCCCTTGCTGTCAGGAACAGGGATGTATTCTCAGAGGTATACTCC-------ATCCTGTCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTCTTGTCCTGATGAGCCTACTGCACTCAGAGAAATTTGTTCTCTCCAGAACCCaaggcatatacatatatattttccctCGTTTCTTTACTGCTGCAGAGCCTTGT---------------TTTGTTCCCATCTTTTAGTCTTCCCTAAATTCT----CCTCCTCTGAAAGGTAC-------------CCCTCTCAACTGAGGTCCCTTTCCAGC----------CACCTCTCCTA------CTGC---TATTTTCAATGGAGACTTACCAGTGTCACAGG-AGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGTGCCCTTTTATTGGGCCCATGAGCTCTTCTTTAGCATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATG---ATATTGTGTAAAATGGTGA-CTGTTTCTCACCTATCTTCCTTCGTCACGCTTAGAGAGAC

a score=16926
s chr3            92789049 511 + 160039680 TCAGCAGCAGCCCCCAGActgctggctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGAGTATTCAGGAGCTGTGAGAGAATCACACATTTGTCAGACACGGTGGCCCCCTAGGCCATACTGACCCCTTACCCTGCCCA
s HiC_scaffold_1 138145833 412 - 233722169 TCAGCAACAGCCCC-AGATTGCTGGCTACTCCCCC------------------------CTCCACAGCAGCTGGAGCC-CCTCGAGGGCTG--------------------------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACC------------------------------------CCCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGC------------GGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATGCAGGAAAC----AGGCCACCCTGCCCGCTCATTCTTTCTA

a score=10617
s chr3            92789088 372 + 160039680 gccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT---GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAG------GAAGACA--------CAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGG-GCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138258165 351 - 233722169 GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGG----------AGTCGAAG-----AGATCTGCG---------AGGCCTGTGGTGGCTC----AG--GCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGA-GGGGGTTGGCACTGCTG

a score=7362
s chr3            92789088 1556 + 160039680 gccactgctgccaccactgctgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcACCCAGAGCT---GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAG------GAAGACA--------CAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGG-------------------ACACTTGGCAGGGGCT--TGGCACTGCTGCTGGC-------TCTGCTGGCAGGACATCTCAGCTGTGAGTATTCAGGAGCTGTGAGAGAATCACACATTTGTCAGACACGGTGGCCCCCTAGGCC---ATACTGACCCCTTACCCTGCCCAGAACTGTAACTGATCATCATA-------------GAAACACATCTATAATTATTTCATTTATAATA----TTCTCAGATTGTTACATCCCGTTTATCATGGTTTTGGAATACCAGAAACATGAGCCCAT--GAGATATGGTTA---CCTGAAATTC--------------AGCAGCTGTAAATAAATATCT--------------AGTGACATTTAGGAAATCTGTGCC----------ATTCTAAATCCTCATACATGTGCCAATATATGTG-------CTATTTCAAAGATGACT-------------AATTGTAAAGGATAGAATAATAATT------TTTTAAAGGTACTTTTAGTGTAATGTCAGTATTTCATAGGACCTTCTAGAACTCTTAGGGAGTAA--GCTCAGCCACTGACAGAAAAATATGTAAACCCTGTTCAAACCCCCATGG-GAACACAAGCCC-------------CTGTTGG------------GAGGCAAGA--GGTCAGATGTATCCAGATTACCAACTGCTCAGGCTAAGGGTGGCAAGCTCAGAGTCATC--CTGGTGGTGTCCAATCGATCAGAGAAATGTATGAACAGATCCTGGAAGCAGGATTCTCTTTCTCATGACAAACTGAAATCCT--GTTGCTCTTTCCTGACTCTAGCT----CTTTACTGGCAGAGGGGGGAAACTTTATT-CAGAAGCAAAGTCCCCCTAGAATCCTGTCTAGATGCACAGTTATTTGTGCTGAGTGTCCCATCCAAAGGGTTCCTATACACTGAAGGTATTTTGTGCTCTCCAGAGCTAGAATATCCA-------ATGTTTTCCAGTGTCTCGTTACCAAGGCTGTGGCTAGTGGCTGACAGTGCCACCATTGCCTTACCCCTCAGACTTCAC---CATGTTTTATGATCTATCAATATAGGTGCAAGGCTGACAGATCC--TTCCCAGTGCCTGTCCAGCTCTAGTATT-GCATCACTCTTA-AAGTCTCTGCCCTTACCTCCAGTAAACACTTACCAAGATGAAGGGTAGCACAAGATCTGTGGGTATCTCAGCCAGTGAGTGAATGGAAGCACCCTGTCCATCGGTCCTTTTATTCTGAC------------CCCAGCTTGTGAGACAGTGGTTGGACATGACACAC----CCTCCTGACACCTACATAGTCATATCATTAAAGATGACCAGTTGTTTCTCCCCAGCCTTC
s HiC_scaffold_1 138197542 1597 - 233722169 GCCACTACCACCGCCACTGCTGC---AGCAGCCACCGCCCCCGCCACTGCTGC---agcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGG----------AGTCGAAG-----AGATCTGCG---------AGGCCTGTGGTGGCTC----AG--GCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACT--GGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAG--------AGATGCAGGAGCTGAGG----GAAAGTAAAACACATATCAGAC---CACAGTA-CACTTTAGCACTGAACACTGATTACTT--------CAGCTCAATTTCTGGTTCTCTCATTTTGAAAGTCAGGAAAATTACCTCTGACTTTTTT-----TAATCCCTCTTTGTAGTCTGTTAGGTCCTTTccttctgagttttatttta----------aagctcaTTTGAGAAATTGTCAAGCCATATAATCTCCAAACACAAGAAGAGTGACTGTTAATTAAAATCTCTAAGTGTAGGAGAAATGACACAGAAGTAAACTTTGTCTAGTGTTAGCATTC---ATTCTGACACAT-CACCAAGATTTCTGAAAATATCCATTACAGGGAGCAGTTTGGGTATGAAGcactctttaagaaaaaaaaaaaaagtatttccttttggaagaaatttgaaaaca-ttttggttTTG---AAGAATATGAAGAACT--------GTAACTACAAAGCAACTTGCAGTAACTTGTCCCAACAAAGTTAACATATGAATGAAGAACGTAAAATCAAAAGAAGTGAATTTGTTGGCCTAATGTTATCAGTGCATTATTGATCAGTT---TCTAGTTTCCTGACTACT-AATCCAAGGCTCTGTTCCTCCGAGCAATCTTCTTGTGAGGTCTAACCAGACCCACAGGTGT---------TCTT------ATGTCTTTCTTCCTC--TAAGTACCAATGTCCTCAGcactttttttctaaaactagACATGGctatatttcca--------aaattatatttcCATCACATACTCATGTTAGGATA--ATCTAGTGGC-CAGT-ATTTTTATTACCTGCAATCGCAAAAACATCATCAGCTACTATAATCAATTTGGTTTCTCTAAAACTGTAGCACACAGCTCTAAAAGTCTCCCAGTTGCTCTTGATC--------------------------------TTACTCTACCTATCACCCTCTGCTTTCAAATTTTCTTGCTCCTCTCT-TCCTTGCCAAGC--ACAATTCAAGTTCCTGGGTTTTCGTATGCTCTGGTCTGAGCATACCTCTGAGAAGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAACACTCTGACCCTGAGCCTTTTTATTCTGACTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTC

a score=11517
s chr3            92789104 396 + 160039680 ctgctgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccacc-----actg-ctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCC------------------------CCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGG---AGGGCATTTTGGGGTCTG-GCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATC-TCAGCTGTGAGTATTCAGGAGCTGTGAGAG
s HiC_scaffold_1 138154332 393 - 233722169 CTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-GCAGTGGCAA---------------CTATAGCAT-TGTGGTGGTTCAGGCAGTAGCCACCACT-------------------CCAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTT----GTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAG

a score=11123
s chr3            92789104 413 + 160039680 ctgctgccacagcagccact---------gctgccaccactgctgccacagcagccactgctgccacca--ctgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCT---CAGCTG--TGAGTATTCAGGAGCTGTGAGAGAATCACACATTTGTCAG
s HiC_scaffold_1 138135515 355 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCT---ATAGCAGCTGGAGACCCCAGCAGCTGGCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG-------------------------ACC-----------------------------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTTG--GGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAG

a score=14339
s chr3            92789124 350 + 160039680 gctgccaccactgctgccacagcagccactgctgccac------cactgctacagcACCCAG-AGCT--GTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAGGGGGGC------------ACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138333241 341 - 233722169 GCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCA------------------------------CCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=3744
s chr3            92789134 331 + 160039680 ctgctgccacagcagccact---------gctgccaccactgctacagcACCCAGAGCTGTGACGATGGCGATGGAGAGATCTGTGGTGTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAG-----CCACCAGAGC-TGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGG----AGGACACTTGGCAGGG-GCTTGGCACTGCTGCTGGCTCTGCTGGCAGG
s HiC_scaffold_1 138135515 285 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCTATAGCA--------------------GCTGGAGACCCCAGCAGC--------TGGCT---GCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTG------CAGCAGCCCCCAGAACTGA---CCCTGCAG-------CAGGAAGAGACT--GGGAGCCACTTAGGGGGACACT---------ACTTTGGGGCC------TTTAGAGGTAGGATACTTGGGGGTGCACTTGGGA-GGGGGCTGGCACTG-TGGCCGG

a score=6144
s chr3            92789154 306 + 160039680 gctgccaccactgctacagcACCCAGAGCT------GTGACGATGGCGATGGAGAGATCTGTGGTGTCT---GTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACC---AGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAG----GAAGACACAGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGG---AGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTG
s HiC_scaffold_1 138180384 291 - 233722169 GCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGC------------------------CCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGAC----TGGGG---CCTTAGGGGGACACTTTGGGG---GGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTG

a score=8607
s chr3            92789213 264 + 160039680 GTCTGTGGTGGCTCAGGCAGCAGCCACCGCCACCAGAGCTACAGCAGCCACCAGAGCTGCAGCAGCCCCCAGAGCTGCAGCAGCACCCAGAGCTGGAGCCACAACAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAGGGGGGCACTTGGGAGGACAT---TTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAGCTG
s HiC_scaffold_1 138528512 234 - 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTG-AGCAACAGCAGGA---------------------AGAGCCTGGAGATCAGCAGG-----------GTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTG

a score=4791
s chr3            92789352 122 + 160039680 AGGGGGGCACTTGGGAGGACATTTTGGGGGACACTTTGGAGGGCATTTTGGGGTCTGGCATTTTGGAGGACACTTGGCAGGGGCTTGGCACTGCTGCTGGCTCTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138112526 116 - 233722169 AGGGGGACATGAAGAAGGAGCTTGTGGG---CACTGAGGGTGGCAATCAAGTA---GACATTTTGGGGGGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCTTGG

a score=54849
s chr3            92806234 2490 + 160039680 GCTAAACACAGTT-GCCAAGATAGACCTCTCAGGGGGA-------ACAAAAAATAAGAATCTGGTAAGGATCAGTGGGGAAGGCTTTATTACTCTGAAACACAGAAGGGG----------TAGCAACATGGGAACAAATTCTGAATCTCCACAGTTAGATTTCAGTATTGTAGTGACCTACGCTTGAAACAAAGGAGGAGCAGGACAGAACAGCAGGCAGGGGCAG-TCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGT-GTTGGTTACTCAGGTCAGCAGCAGT---------CCCCAGACTGTTGgctactgccac------------agcagccactgctgccaccactgctgc------------------------cacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAG------AGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTGATGGATGCTCAGGAGCTGTAAAAGAGTTGCACACAAATCAGACCCAAGTTCCAACATCATGTTGTCTACTCTTGTCCGTTCTGATTCATTTCCCATCCCCTCCTGAGTCTTTTGATCAGACAAGAAAGTATATACAGGGTTTTCTTTA-----TCTTTACCCTTTACTAAGCACTTTGTTTCAGTATCTCACACCAAACTCCATTT-AGAATATGTCAAACAGCACGCTCTTCAAACATGGCAAGAA-AGTTTTTGATTATTAAAATCACCA----------AAGTG-CTCAGTAG------------------AGCACTCACTCTATTGCACCAATGAGAACTCTGAAACTATTCA--------AGGAGTTCAGAGGTGAAA-GGTCTTTCAG-AAAAGAGGAAAAGCATTTCATCT--GGAGGAATTTCAGAATCACATGGTCTTGGAGAA-ATGAAGGA----AACTGTAAGTC--TTTGGGGTCAATTTGTTACCATCAATTTAC----------ACCAAAAGAAACTAAAGAGAAGTGCAGGTCCTAGACCTGGGCTGATTCCAACTCAGTCACTGAGGTTTGTTTCCAGACCTTCTGGCTCTCAGGCCAGGGCCCTGTCCCCCACATCAGTCTTCCTGC--TGACTAATCAGAGCAACAGGCCTCTCTACTCTTTTCTTCCTCCAA-TACCTGTGTCCTCAATACATCTTTTCCAAAAATGAACATGGCTG-ACTTTCAAAATTGT-----------ATACCAGTGTTCCCCTGAATAATCTAGTAGACAACATTCCAAAACCCTGTAGGCACATACTAAACAACA-----TAAAATAAATTTAGTTTCTTTGAAAATATAGCACACATCCCT--TAGTCTTCTCAGTTTCATTTGAT---------------------TACTTTCAAATTAACCCCCCTCTCCCCACATACTTCTTTCTAA-TAAAATGC---TTCCTGCAGCCTACACAGCCTCTCTCCTGCTCTGGCCTGGCCATTCTTCTGAAGAAACACCTTCTCCTGT--CCTGTGGACACTTACCAGAGGGACACACAGGACAGACTCTGTAGACACCTCAAGATGTGAGTGGACAGAAGTTCACTCTGTCTGGCTGCCAGCCTTTTTATTCTGCTCTTAAGTTCTTCCCTTGGCATATGAGACAGGGTTTGGGCATGG--AGGATTGCCTTCTAACACCCACATGACTCTGTGACAGGTCATGACTGGATGTTCCTCACCTGCCACCC-TCCACTGGACTCCAGTCATGTATTCCTGGGTTATAATGTGTTTGCTTGATGTAGGAATACTTGGAGAGAAGATGTGGATGAGGTAGGTATTCCTGAAGTCCTTTTCCCCTTCATTTCTATGTTTCCCTCATGCCTG--------GTAATGTGCTAATACTTAAGGGTCTCTGGTCCTCCTACCCCCAGTTTCTTCTTCCTTTCCAAGACAGATAAAACTAATTTTTCATCTAGACCTTTGATTCTA-GTGGCTTTGTGTGATATTACACTTTTGAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatatctatgtgtgtatctgtgtgtTGTATGCACAGAATACTCATTTTAAAAGTAGTCCTTGGAAATGtgggaaaattactcaaaatcttaaa--cctcagatttctgatcttaacataataatagaaatatctcctttgtaggattacaaaattaattactatgggaaagtgtaagtaaCCAAGATAATATATGATTTATTTTGACATTCAAGAAATGAATAGATGAATGGATGAAAAGGTATACAGG-------TGATAGAGATCAGTACATGATAGAT-TAGATTCTGA---GAGACAGAGAGAATGAATAGAGACTCACCTGGGTTTTTTAATGTAAATTGGAATGTTTTAA----AGATTCAGATGCATTTAAAGCAAAAG
s HiC_scaffold_1 138197228 2501 - 233722169 GCTGAACCCTGTTTGCTAACTCTGACCTGTGAGAATGATGCTGACAAAAGAAACAAGAGGCTGGTGAGGCTCTGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTG--GCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGA------------------------GCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG-TGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAGACCACAGTAC--ACTTTA-GCACTGAACACTGATTACTTCAGCTCAATTTCTGGTTCTCTC------ATTTTGA-AAGTCAGGAAAAT-TACCTCTGACTTTTTTTAATCCCTCTTTGTAGTCTGTTAGGTCCTTTccttctgagttttattttaaagctcaTTTGAGAAATTGTCAAGCCATATAATCTCCAAACA---CAAGAAGAGTGACTGTTAATTAAAATCTCTAAGTGTAGGAGAAATGACACAGAAGTAAACTTTGTCTAGTGTTAGCATTCATTCTGACACATCACCAAGATTTCTGAAAATATCCATTACAGGGAGCAGTTTGGGTATGAAGcactctttaagaaaaaaaaaaaaagtatttccttttggaagaaatttgaaaacattttggttTTGAAGAATATGAAGAACTGTAACTACAAAGCAACTTGCAGT-AACTTGTCCCAACAAAGTTAACATATGAATGAAGAACGTAAAATCAAAAGAAGTG-AATTTGTTGGCCTAA--TGTTATCAGTGCA-TTATTGA--TCAGTTTCTAG-TTTCCTGACTACTAATCCAAGGCTCTGTTCCTCCGAGCAATCTTCTTGTGAGGTCTAACCAGACCCACAGGTGTTCTTATGTCTTTCTTCCTCTAAGTACCAATGTCCTCAGcactttttttctaaaactagACATGGctatatttccaaaattatatttcCATCACATACTCATGTTA----GGATAATCTAGTGGCCAGTATTTTTATTACCTGCAATCGCAAAAACATCATCAGCTACTATAATCAATTTGGTTTCTCTAAAACTGTAGCACACAGCTCTAAAAGTC-TCCCAGTTGCTCTTGATCTTACTCTACCTATCACCCTCTGCTTTCAAATTTTCTTGCTCCTCTC------TTCCTTGCCAAGCACAATTCAAGTTCCTG-----------GGTTTTCGTATGCTCTGGTCTGAGCATACCTCTG-AGAAGTCCCTGCTTCTGTTCCCACTGGACACTTACCAAGGTCACAAGCAGCACAGAATCTCTGGATACTTCAAGAGGTGAGTGGATGGAAA--CACTCTGACC--CTG--AGCCTTTTTATTCTGA-CTTGAGCTCTGCTCCCAGGGTGTGAGGCAGGGCTCTGGCATGGCAAGACTTGCCTCCT-CCACCCATATGGTGCTGTGACAGGTGATGATTGGAAAATCCTCATCTACCTTCCATTCACTGAGCTC-----------------------------------------AGAGTAGGCAGAAAGAAACAGC----------ACCACTCCTGGAATACTCTGCCATTTTGTG--------------ATGACTGGCCTCACCGTCATATGTTCATGCCTATGGATC-CTGGTCACACGACTC-------CTTCATTGTTTCCATCTTAGATAACAATGGTTTTCCATCTATATATTTGATTATGCATGGCTTAATGTAAAATTCCACATTTTTGAGTTATGGCTG-GTCTgtatatgtgtgtgggggggggggtgcacaTTTGCA---------GTATA-------GTGGTTGAGACAAAA---CCACTCT-----------------------GCAAACTCAGCAAAGTATTAACTTCTTTTAAGTGGAGATCATGAT-TAATA--AAAAGGGTCATCTTTGaaagattaagaaaat-attaGTATGGTGAAAGAAAAGTAGCCAGGATAATGTGCTGTATGTTTCAACATTCAGGAAAATGATGGATACATAAATAAAgggataaatagaaaaatatagatagatagagctACA-GATAGATGTAGAACTAGAAGTAAGACAGAT-GGATAAATAGAGGCAAATTTACA-CTTTTAATgtacaataaaaagttttaagctcaaaattaaatgtaattttaataaaag

a score=25553
s chr3            92806273 604 + 160039680 AAAAAATAAGAATCTGGTAAGGATCAGTGGGGAAGGCTTTATTACTCTGAAACACAGAAGGGG----------TAGCAACATGGGAACAAATTCTGAATCTCCACAGTTAGATTTCAGTATTGTAGTGACCTACGCTTGAAACAAAGGAGGAGCAGGACAGAACAGCAGGCAGGGGCAG-TCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGT-GTTGGTTACTCAGGTCAGCAGCAGT---------CCCCAGACTGTTGgctactgccac------------agcagccactgctgccaccactgctgc------------------------cacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAG------AGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138257900 639 - 233722169 AAGAAACAAGGGGCCGGTGAGGCTCTGCATG--ATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTTTG--GCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGA------------------------GCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=8580
s chr3            92806346 534 + 160039680 GGAACAAATTCTGAATCTCCACAGTTAGAT------TTCAGTATTGTAGT-GACCTACGCTTGAAACAAAGGAGGAGCAGGACAGAA-CAGCAGGCAGGGGCAGTCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGG----------GGGTGCACTTGGGA------GGAGG--TTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138377442 460 - 233722169 GAAATAAAT---gattcttcacagaaatatgGTGTCCTCATTATCGTGGTCAATTCATGATTTATATGAGAGAGTGTAATGAGGAAAGCATCAGGAGGTAATGGGCTCTGGATCAT--CCATTTTCTCAATAGCTCCTCC----------TGACCCAGCTCAGCAGCAG-CCTCAGAGccagggcagcagccagagcctCCACTGGGGTCAC-ACT-----CACAGCAGTCAGGAGCCTGGTGC--------------------------TTGCAGTGGTGTTGGAAGAGACTG---GGCATGTGGTGGCTCAGGCAACAGCCACCA------------------CCCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCTGGA------------------------GCCACAGCAGGAAGAGAC---------CCAAGGAGTGCATTATGCTGGGCTCTGGGGTG---GGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTGGGACACTTTGGAAGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=11618
s chr3            92806358 519 + 160039680 GAATCTCCACAGTTAGATTTCAGTATTG-TAGTGACCTACGCTTGAAAC--AAAGGAGGAGCAGGACAGAACAGCAGGCAGGGGCAGTCTTCTGAACATGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138368791 448 - 233722169 GAATCTCT---GGGAGTCTTCAGGATCCCTATTGACCCATGGTTTAAACCCAGGGAATGGAAAGGGGGATGCATCAGGCTGCATCAGACTCTAGAATGCTGGGTCATTTCAAGAGCTCTTCCTGGG-----------CCAGCTTAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGTC-----------------------TATGGCGGTGGTGGAAGAGA------CTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTG---GGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=13288
s chr3            92806434 500 + 160039680 AGGGGCAGTCTTCTGAACA-TGGCTTCCTCCTGAATGACTTGTCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctg----ccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATT-TTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT---CAGCTGAT-GGATGCTCAGGAGCTGTAAAAGAGTTGCACACAAATCAGACCCAAGTTC
s HiC_scaffold_1 138135459 421 - 233722169 AGGAGAAACTATCTGACCACTTGCTTCATTCAAGTCTTCTTATTTAA---GTTCAGAGTCCACTTCAACAGCAGCCTCCAGATTGTAGGCT------------GCCACCCTCTCTATAGCAGCTGGAGACCCCAGCAGCTG--------------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG-----------ACC-------------------------------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACTACTTTGGGGCCTTTAGAGGT------------AGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAGCTGATCAGGTGTTTTGAAGCTGAGGGACAGTCAAATACAAGTCAGGACagaattc

a score=15318
s chr3            92806475 405 + 160039680 TCTAAAGTGTTGGTTACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATAC---AGGGGGGC------------ACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138333216 366 - 233722169 TCTATAGTTCTGG---CCCAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGTC-----------------------TGTGGTGGTAGGGAAAGAG------GCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCC------------------ACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=10293
s chr3            92806490 390 + 160039680 ACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138633178 306 - 233722169 ATCCAGGTCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAG----------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGG-----TAGCAGa----------------gcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=10261
s chr3            92806490 390 + 160039680 ACTCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138647036 306 - 233722169 ATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAG----------ACTGCCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagca---------------------ggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=10394
s chr3            92806492 388 + 160039680 TCAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138439672 304 - 233722169 TCAGGTCAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAG----------ACTGCAG--------ACCACTGTCGCCATCAC------AGGAGTCTGATCTCCAGAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcagg-----------aaggagCAGCAGGTAGATACTGTGCTGGGCTC----------TTCTGGGGGCATTTGGGGGC------------------------GGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGG

a score=12117
s chr3            92806493 319 + 160039680 CAGGTCAGCAGC-AGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGA
s HiC_scaffold_1 138196594 292 - 233722169 CACATCAGCAATTAGCCTCCAGATTGCTGGCTACTTCCTCATC---------------CACAGCAGCTGGAGCAGCCTGAGGGCTG--------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAGG-------CTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTGTAGGACCCTTGGA

a score=12413
s chr3            92806493 384 + 160039680 CAGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcca-----ctgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT
s HiC_scaffold_1 138408310 324 - 233722169 CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTG-GGCTCACACT-----CACAGCAGTCAGGAGCCTGGTGTC-----------------------TATGGCGGTGGTGGAAGAGA------CTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTT------------------GAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGG-----------AAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=15065
s chr3            92806493 388 + 160039680 CAGGTCAGCAGC---AGTCCCCAGACTGTTGgctactgccacag---cagccactgctgccaccactg---ctgccacag---cagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGG--GGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGC
s HiC_scaffold_1 138300176 352 - 233722169 CAGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGC---------AGGTAGAG--------------------------ACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGG---------------GAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGC

a score=8911
s chr3            92806494 386 + 160039680 AGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAG-AGCTATGG-----CGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATAC---AGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138398568 306 - 233722169 AGCTCAGCAACAGCACCCAGA------------GCCATGGCAGCAACCAGAGTCCCCACTGGGCTCACACT---------------------TAGAGCAGTTAGGAGCTTAGGGCCTGCAGTAGGAGCAGAGGA---TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAG-CCCCAGAGCTG------------------------------------------------AAGCCACAGCAGGAAAATACTGGAGGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAG---GGCACTTCAGTGGGTATTT-TGGGTGCACTTGAGAGGGGACTGGCactgctgctgcttttgctgacAGGATGTCTTAG

a score=9140
s chr3            92806494 386 + 160039680 AGGTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTG---CACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138613648 301 - 233722169 AGATCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAG----------ACTACCG--------ACCACTGTCACCATCAC------AGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCc-agagcaggga--gcag----------------------agcaggaggaggcag---------caggcagacact---------------gtgctgggcTCTTCTTGGGCCATTTGGGGGAGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAG

a score=9487
s chr3            92806496 384 + 160039680 GTCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAG
s HiC_scaffold_1 138474314 295 - 233722169 GTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAG----------TCCCAG----------ACTGCAGACCCTGACACCATCAC------AGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------GAGCTGAGGCCACCGCAGCCCCcagagcaggga--gcag----------------------agcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGG------------------------AGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAG

a score=5702
s chr3            92806497 329 + 160039680 TCAGCAGCAGTCCCCAGACTGTTG---gctactgccacagcagccactgctgccacca---------ctgctgcc-----acagcagccact-----------------------gctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGG---GGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGG
s HiC_scaffold_1 138154337 319 - 233722169 TTAACAACAGCCTCCAGACTGCTGCTTGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAGGCAGTGGCAACTATAGCATTGTGGTGGTTCAGGCAGTAGCCACCACT----------CCAGAGCTGCAGCA--GCCAACAGA----------------------ACTT---CAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCA-------------AGAAGAGACTGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGC---ACATTTGGGAATACACTTGGGAG

a score=20876
s chr3            92806497 1545 + 160039680 TCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagcc--actgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTGATG----GATGCTCAGGAGCTGTAAAAGAGTTGCACACAAATCAGACCCAAGTTCCAACATCATGTTGTCTACTCTTGTCCGTTCTGATTCATTTCCCATCCCCTCCTGAGTCTTTTGATCAGACAAGAAAGTATATACAG-GGTTTT----------CTTTATCTTTACCCTTTACTAAGCAC-TTTGTTTCAGTATCTCACACCAAACTCCATTTAGAATATGTCAAACAGC--ACGCTCTT---CAAACATGGCAA---------GAAAGTTTTTGATTATTAAAATCACCAAAGTGCTCAGT-----------AGAGCACTCACTCTATTGCACCAATGAGAACTCTGAAACTATTCAAGGAGTTCAGAGGTGAAAGGTCTTTCAGAAAAGAGGAAA-AGCATTTCATCTGGAGGAATTTCAGAATC----ACATGGTCTTGGAGAAATGAAGGAAACTGTAAGTCTTTGGGGTCAATTTGTTACCA------TCAATTTACACC-----AAAAGAAACTAAAGAGAAGTGCAGGTCCT--AGACCTGGG--CTGATTCCAACTCAGTCACTGAGGTTTGTT---TCCAGACCTTCTG-GCTCTCAGGCCAGGGC---------------------CCTGTCCCCCACATCAGTCTTCCTGCTGACTAATCAGAGCAACAGGCCTCTCTACTCTTTTCTTCCTCCAATACCTGTG----TCCTCAATACA---------------------TCTTTTCCAAAAATGAACATGGCTG-ACTTTCAAAATTGTATACCAG-----------------------TGTTCC------------CCTGAATAATCTAGT------AGACAA-------CATTCCAAAACCCTGTAGGCACATACTAAACAACATAAAATAAATTTAGTTTCTTTGAAAATATAGCA------------CACATCCCTTAGTCTTCTCAGTTTCATTTGATTACTTTCAAATTAACCCCCCTCTCCCCACA--TACTTCTTTCTAATAAAATGCTTCCTGCAGCCTACACAGCC-TCTCTCCTGCTCTGGCCTGGCCATTCTTCTGAAGAAACACCTTCTCCTGTCCTGTGGACACTTACCAGAGGGACACACAGGACAGACTCTGTAGACACCTCAAGATGTGAGTGGACAGAAGTTCACTCTGTCTGGCTGCCAGCCTTTTTATTCTGCTCTTAAGTTCTTCCCTTGGCATATGAGACAGGGTTTGGGCATGGAGGA--TTGCCTTCTAACACCCACATGACTCTGTGACAGGTCATGACTGGATGTTCCTCACCTGCCACCCTCC
s HiC_scaffold_1 138180360 1537 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCC---------------CTCCACAGCAGCTggagcctcccgagggctg--------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTG------CAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGT------------GGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAATCAAATACAAATTAGACCTTGACCACA----------GGTCACATTTGGGCACTCTGATTCTCTTAGCATCAC------------TTGAGCCATAGAAACATCATCTCAAGTGGTTTTATTTCTGATGCTTTCTCCATATTCTTACACCATCACATTTATCTC----TCTGAATTCTACATGCACATAGAAGTTGCATAAGAATTGACATTGTTATACAACAATAGCAAACTGAGACCAAAAAATCTTATAGAACATATTCAAGTAAAAGATTTGTGGgaggaaatgagagaaagaaaattattgcAAACATCTTGAGACTAAAATTGCCCA---Atttcag----ggaaaatattttttaaaagaaaaagcatcaTTTCTTCTTG-------TCATAACCTATAAGATGATCTT------ATCATGCAGGTCAGGGTTGCTAAGGATCTAGAGAATACCAGGTCAGTCAGCTTACTCCCTCAGAGAAGAGACTAACAAACTTATCAAATCCTGCAGACGTGGGGCTTGAATCTCAGGCAGTC-CAGAGCTAGGTTCAGTCCAGAGCTCAGATGTCCTCAGTTCACAGCTAACTGGGGTTTATAAGTTAGCAGGTCTCAGACATGTGGTATC---CTAATTAACTTGAGAAATA------CCAACAAACTCCACACTCCTAGATGTGTGAGTTTCCTTAGCCCAGAAAAGCACTTGGTTTTCTCTTCCCTTGCTGTCAGGAACAGGGATGTATTCTCAGAGGTATACTCCATCCTGTCCAAATGGAGGGAGTCTCTGTTTCCGTGGCTCTTGTCCTGATGAGCCTACTGCACTCAGAGAAATTTGTTCTCTCCAGAACCC--aaggcatatac------atatatattttccctCGTTTCTTTACTGCTGCAGAGCCTTGTTTTGTTCCCATCTTTTAGTCTTCCC-----------------------TAAATTCTCCTCCTCTGAAAGGTACCCCTCTCAACTGAGGTCCCTTTC----------CAGCCACCTCTCCTACT--------GCTATT------------------------TTCAATGGAGACTTACCAGTGTCACA-GGAGCACAGAATCTCTTTACACCTCAGGAGGTGAGTGGATGGAGGCCTTCTGTTCCTGT------GCCCTTTTATTGGGCCCATGAGCTCTTCTTTAG---CATGAGACAGGTCCCAGGCATGAAAGGACCCGCCTCCTGCCACCCACATGATATTGTGTAAAATGGTGAC----TGTTTCTCACCTATCTTCCTTC

a score=19455
s chr3            92806497 1531 + 160039680 TCAGCAGCAGTCCCCAGACTGTTGgctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCT---CAGCTGAT-GGATGCTCAGGAGCTGTAAAAGAGTTGCACACAAATCAGACCCAAGTTCCAACATCATGTTGTCTACTCTTGTCCGTTCTGATTCATTTCCCATCCCCTCCTGAGTCT---TTTGAT---CAGACAAGAAAGTATATACAGGGTTTTCTTTATCTTTACCCTTTACTAAGCACTTTGTTTCAGTATCTCACACCAAACTCCATTTAGAATATGTCAAACAGCACGCTCT-TCAAACATGGCAAGAAAGTTTTTGATTATTAAAATCACCAAAGTGCTCAGTAGAGCAC----TCACTCTATTGCACCAATGAGAACTCTGAAACTATTCAAGG------AGTTCAGAGGTGAAAGGTCTTTCAGAAAAGAGGAAAAGCATTT------CATCTGGAGGAATTTCAGAATCACATGGTCTTGGAGAAATGAAGGAAACTGTAAGTCTTTGGGGTCAATTTGTTACC--ATCAATTTACACCAAAAGAAACTAAAGAGAAGTGCAGGTCCTAGACCTGGGCTGATTCCAACTCAGTCACTGAGGTTTGTTTCCAGACCTTCTGGCTCTCAGGCCAGGGCCCTGTCCCCCACATCAG-------TCTTCCTGCTGACTAATC---AGAGCAACAGGCCTCTC----TACTC----TTTTCTTCC--------TCCAATACCTGTGTCCTCAATACATCTTTTCCAAAAATGAACATGGCTGACTTTCAAAATTGTATACCAGT-----GTTCCCCTGAATAATCTAGTAGA-CAACATTCCAAAACCCTGTAGGCACATACTAAACAACATAAAATAAATTTAGTTT------CTTTGAAAATATAGCACACATCCCTTAGTCTTCTCAGTTTCATTTGATTACTTTCAAATTAACCCCCCTCTCCCCACATACTTCTTTCTAATAAAATGCTTCCTGCAGCCTACACAGCCTCTCTCCTGCTCTGGCCTGGCCATTCTTCTGAAGAAACACCTTCTCCTGTCCT--GTGGACACTTACCAGAGGGACACACAGGACAGACTCTGTAGACACCTCAAGATGTGAGTGGACAGAAGTTCACTCTGTCTGGCTGCCAGCCTTTTTATTCTGCTCTTAAGTTCTTCCCTTGGCATATGAGACAGGGTTTGGGCATGGAGGATTGC--CTTCTAACACCCACATGACTCTGTGACAGGTCATGACTGGATGTTCCTC
s HiC_scaffold_1 138145833 1317 - 233722169 TCAGCAACAG-CCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGCTGGAGCCCCT-------------CGAGGGCTG--------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGA------------------------GCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGGGGT------------GGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAGCTGGTCAGATGTTCTGGAGCTGAAGGAGAGTTAAATTCAAGTTAGATGCAGGAAACAG-GCCACCCTGCCCGCTC--ATTCTTTCTATTGAATTTCCACTctgtgttttagttttagtttcattcaccgaaaaaaaaaaatccccagcacTATTTT----------CCTTACTAGA-----------------------AAGAGATCATT----ATTTGACAAATAGAAAATACTATCAAATATCATTATAAAGT------------------------------GTAAAGCACAGTTTTATGCta-------------aatattgaaattattctATATAGTCTAATTCAGAACTGAAATAATTCcttagtagaaaaaataatatcctGTAAACATCTTCAATGATTCTACATCC---CAGCATTTGCAATCAGAATGAAAAGGGA-----TCGTGGCCATTTCTTGATCTGCTCACGCTATGAAGACAGAAGCTAAGAATAAATGA-------AGATCTGTGCAGA-----------------------------AGACCCT-TGACTCACAGTCCAACTCTCTGATGTTCTCATAAACAGAAACTCTTCCT------TGATCTAGAGATTATTTCACTTCTCGtgttacttgaaatattttcccAGACCCTTTCTCATAGCCATGTGTGCATTAA----TCTCCAAAA------------GATCTCCCTGATCCTATCCTTGTTTGCAGATCTCTGGAAT--TCTTTTAGAGTATCATTCTCTCACCCT----AAGCATTCTAAACAACCAAGGATCTGCCAGGTTCTCAAAGCCCTGGGAAGGAATCAAGACTCCTTCTGT---------------------TCTTGAAATAGA----------TCCATAGGCTTTT-----------TGCTTC------------CAGCCACTCTCCTTCTCTGGACT-GTGAATCTCCTTAGAAAATCCCTACTCCTGTTCTCAGTGGACACTTACCGAAGT--CAAGGAGCTCAGAGTTTGTGAACACCTCAAGAGGTCAATGCATGGA-----ATGCTGTACCCCTG--AATCCTTTTAT-------CTGAGGCTCCACCTCAGCAGGTGAGACAGAAGCAAAACATGAGAGAACCCAACTCCAGTCACCCATATGGTGCTGTAACTGGTGATGACTGAGTGCTCCTC

a score=21324
s chr3            92806498 433 + 160039680 CAGCAGCAGTCCCCAGACTGTTGgctactgccac------------agcagccactgctgccaccactgct------------------gccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGAC------GGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTG---ATGGATGCTCAGGA--GCTGTAAAAGAGTTGCACACAAATCAGACCCAAG
s HiC_scaffold_1 138728685 438 - 233722169 CAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTG------CAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGGT---------------------GGGCA---GGGGG------ACTTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATGAATGCGCTGAAAGACAGTACAAAGGTTTTAAATTCATCTACTCCAAG

a score=7928
s chr3            92806521 287 + 160039680 gctactgccacagcagccactgctgccaccactgctgccacagcagccactgctgccaccactgctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGAC-----------TCAG-GCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTT---GGGGGCCTGGCACT
s HiC_scaffold_1 138728768 269 - 233722169 GCTACTGCCACAGCAGCCACtactgccaccactgctgc---agcAGCCAGAGCT-------CTG-----GTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCC---GAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAG-----------GAAGACGCTGGAGGTGGGCA----GGGGGACTTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACT

a score=13791
s chr3            92806521 494 + 160039680 gctactgccacagcagcc-----actgctgccaccactgctgccacagcagccactgctgccacc-----actg-ctacagcATCCAGAGCTATGGCGATGACGACGGAGAGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCC-----------------CAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTGATGGATGCTCAGGAGCTGTAAAAG---AGTTGCACACAAATCAGACCCAAGTTCCAACATCATGTTGTCTACTCTTGTCCGTTCTGATTCATTTCCCATCCCCTCCTGAGTCTTTTGATCAGACAAGAAAGTATA
s HiC_scaffold_1 138154331 492 - 233722169 GCTACTTTAACAACAGCCTCCAGACTGCTGCT--TGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-GCAGTGGCAACTATAGCA----------------TTGTGGTGGTTCAGGCAGTAGCCACCACTCCAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGAC-TGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGGCAATAATTCAGGACCTGAGACAGTCAAATTGCGTCAGAAAAAGTCACAGG-CCAACCAGcacact------ttttatcttttctgattcATTTCTAGCTGCTTC------ATTTTGATGAACTATTGAAGTATA

a score=4642
s chr3            92806620 263 + 160039680 AGATCTGCGAGGCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAG-CTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGAT--ACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTG
s HiC_scaffold_1 138470337 189 - 233722169 AGACCT-CAGAGCGTAGGGGGGCTCAGGCAGCAGCTGCCATCCCAAGAACTGCATCAGCGTCCAGAACTGGAGCCATAGCAG---GAAGGGCCTGGAGATG-------------------------AGCAGGGGGCTGGACAGAGGGACA--------AACAGTT----------------------------------------GGAGAACACATGGGATGTGGTCTCCACTGCTGCTGGTACTAACAGCAGTACATCTCAGCTG

a score=8655
s chr3            92806631 252 + 160039680 GCCTGTGGTGACTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGG----------GGGGCACTTAGGAGAACAT---TTTGGGGGGCATTTGGGGGCCTGGCACTT---TGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTG
s HiC_scaffold_1 138528512 234 - 233722169 GCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCT---ACTACAGT----------------------------CTCAGTAGCTGAGCAACAGCAGGAAGAGCCTGGAGATCAGCAGGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGA---AACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTG

a score=6147
s chr3            92806647 207 + 160039680 GCAGCAGCCACCACCCCCAGAGCTGCAGCA---GCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCA------GGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTG
s HiC_scaffold_1 138333358 210 - 233722169 GCAGCCACCACCCCCAGAACTGCAGCAGCCCCCACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAG---GAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGT---GCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTG

a score=6734
s chr3            92806647 207 + 160039680 GCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAACTACAGCAACCCCCAGAGCTGGAGCTGCAGCAACCCCCAGAACCCAGGCTACAGCAGGAAGATACAGGGGGGCACTTAGGAGAACATTTTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTG
s HiC_scaffold_1 138180513 174 - 233722169 GCAGCAGCTACCA------GAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCA------AGAA--GAGACT-------GGGGCCTTAGGGGGACACTTTGGGGGGCATTTTGGGG------TGG------GGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTG

a score=4649
s chr3            92806745 149 + 160039680 AGCAGGAAGATACAGGGGGGCACTTAGGAGAACATT---------TTGGGGGGCATTTGGGGGCCTGGCACTTTGAAGGGCATTTGGGGGTGCACTTGGGAGGAGGTTGGCACTGCTGTTGGCTTTGCTGGCAGGACATCTCAGCTGATGGATGCTCA
s HiC_scaffold_1 138112501 151 - 233722169 AGGAGGAGGCTGGAGGGGAGCCAGAAGGGGGACATGAAGAAGGAGCTTGTGGGCACTGAGGG---TGGCAATCAAGTAGACATTTTGGGGGGCATTTGGCAGGGAACTGGCACTTCTGCTGGTTTTGCTTGTAGGACATCT----TGGAGAATGTTCA

a score=30431
s chr3            92814013 1690 + 160039680 AATAATAAGTGACGAAAACTAAAATTCTGTA-------------CTTGTGTGCATGAATAAATAATTCATTGCACTTCCAAATTGTTCTGTTTTTTTTTTTTTCCTGATTTCTATCTGGAATCTTTCTTTGATGGTTTATTTTCACTGAATTTAAGTCCACAAGTTTTA-------------TCTGTGGCTGAATGGAAGTCACTTCAAATAAGGGAAACTATATATATGTACTATTACTTTCAGAATATAACATTAGTCTTCCTTCTATAAGGAAATAGAGCACATTTGAGAGCACAATAATCTTA-AGCTTGATTACTGTTGGTGACAACTCTTAAACATGTGCTCAGACATACTAGTTAGCCTCTCCA---------TCTGT--ACAATGGAGTAAATACTAATGCATTCAAGTTTCTGGAAACATGAGGAAAGACTACAACTTCATATGGTATTCCATATA-CAAAAGTTTTCCATCTCCTATTTTTACTGCAATTGACCTAAGCTAAACAAAGGACTCAGGAAGCATTGCCTGAACCAAGAAGAGCAA-------------------------CTCTATCAGGCATAGCA---------TAACCATTAAGAAAAAGGGCCCATCACCATGTAGCACAGGCAATTTCACCCTTTGTTATTACTAAGATTATTATCATCCAAGATTTCTTCATAAATGTAGTCATATACACACTGACTCATAA--GTAGGTACAGCTAGTCTAGACCTTAAATGGAGGGTTTTGTATTGAACTTGTCTATTTGGTTTTTTTTTTTTTTTTAACATCAAGTCTATGATTCTCACCTACATTGTGTCAGAAGTTTACAGCTCAGTCCTCTCTCAAAACTTGTAGACACCTAGAATCTATGTCATTTCCTCTTAAAGTGCATGTCATAAACTTTTTTATACAAAAGTCATTGGAGGAAGACTGAAAATTGAGTCCTGAAACCAGCAGAGTACCTGCATACAGTATTAGGCGCCAAGAAAGATGTCTCATCAAGGAGGAGTAATGTATCTCTCCTGGCTCACTTGTCTTTAAATCATGCTGATACTCTGACTGTTGGTACACCTTCCTGGAA---GTTCCCTCTTTCCTCATTCATTATACTCAGCTTCCAT--CATCTGTGACCTATAGTTGCCTCCTGGA-CATTCTATCCACTACATT-CCCCTCCTATGTGCTTCCAGGACACCCTATGCCTCCCATCCCAAAGTTCATAACACATACATTATTTACATTGCTTATGATTGCATCTCCAACATCAATAATTTTCTGGCAGTTAGCCAAGTCCCAGTAAATAGCTATGACATGAGTGGATGTACTGATGCAAGGTGATAAATAATCTTTTCCTTAATGGGAA--TAACTCCAGAGAAAAGGGGAAAGATGTTAACTCAGCTCAAGATTCCTGTGGCAAAA---CATGAAGAGTATGACAGGTAGATTAGGCAAAGCCTGGGTTCTTTCTAAGTCTGTTTA------TCTAGCTTTACTTTCCAGATCAGAAACCCTCTTATTTAGGTAAATAAACTTGTGATGGTCCCTGACAATGGAAAACACAAGAATCACCAATTATCA-CCCATTTTCCTGGTTCATCTCAGTCACCACAATGCAGATGCTCT-ATAGAACTAGTCAT-CCAAAACACAGGACTAATCCATGGCCATGGACCAAATCTGC-TCACCATCCAACTACACCTCCAAACATCATCAAAGTATCTGCATGCACACAGGATGTCTTTTGGTTACTAGCATCGgcta
s HiC_scaffold_1 138203047 1694 - 233722169 AGTGGTACATAATAAAATctcaaattatatttatatatatcctTCTTGAATGCATGGATAAGTAGTACATTCCATTTCAAA-------CATTTATAATTGTTTCCTTATTTCTAGTAAGAGCATTcccttaatgattt-ttttaatggaatttaaGCTCCTGGATTTTACTAAAAGGGATATTCTTTCCCTGGATGAAAA-CACTTCAAATATGGGAGATGAAA---ATATGATACTCTTTtgcaaagataacaatattcTTTGTCCACAGGAGAAGTAGACCAAATTTG-GAGCAAAATAAGGCTATAGCCTTATC-CTAGAACTAACTGGTCTTAGATGTATGCCCAGAAAAACTACTTAACCTccttagattttgtttttgttgaaaaTGGAATGAATGTT----TTTTCAAGTTGttagaaaaatgggaaaagagtTCTGCCTCAGGTGGTGGCTGGCACAGCGAACGTCATT--TGCCCTGGCCTCACTCATTTTGTCATAAACTCA------GGGCCAGTTTACACTCTCTGAGTCAAAAAGAATAAGAGACATTTAGaacataaagttttattttttcagatatgACAAGTTAGGTATAGTAACTAATAACAAGAGTCCATCACCATTTGAAACAGGTGATTTCCACTCATCCCAT-AATGAAATTTTAATCAACTGAGATTTCTTCACACATGCAGCTATACATATATCCACTCATCATTGCAAGTACAGTTGACATGTATCTTCAATTCTGAGCTTCATGATGAATTT---CATGTAACATTTTATTGTGTC---ATATTGATTCCATGATTCTAACTCTTGTTGAATCAGCCAtt-atacttcatt--tttctcataacTTGAAGTCACCCAAAATATAAGTCAGTTTCATTTCAAGT--CTTTCTCCAAGGTGTTTATAAAAAGTTCATTAGATCAGTACTTAAAATGGACTTCTGAGACCAGCAGAAAGCCTCCATACACTGTTGTGCATCAGGAAACACGTTTAGCTAACGAGAATCCATTCCTCTCTCCTTTGTCACTAA---TTCAGTTGTGATAACAACATGTCTGCTGTCATCTCTGCCTGgaaccctctcctcctttctccattCATCa-acttatttccttttctatctcTTAAGTATAGTTGCCTCTTCTAGCACTGGATGCACTATTCTGCTTATCCTAAGGTCTTCATGTACA--CTGTGTCTCCTTGGTTGAAG-CCTCATCATAGTGATTTTCTGCTTTGATTACTGTAAAATCTCCAGTATCAGTCAC-----------------AGTTTC---------------------TGAATGCCTTGATGCATGGTAATAAACACTTTCCTCCCTGATAAATATGTAACACTcgagaagagaggaaagatgtTGTC-CAGCTTAGGGTTCTTATGACAATAGGTAGTAAGGAGCATGATTAGTGAATTTGGCACAGATTGGCATATTTCTAG--CTCTTTAGTTGCTTCTGAGTTCATTTTCCAGATCATGAAACCGTGTTTTGGGGGGAATTACCT--AGATGCTACCT----ATGTGAAGCACAGGGATAATCAAGAAACAGCATATTTTCCAGACAAATATATAGCACAACCATACAGATTCTTTGATTTGTCTCGTCATGTCAGAATTCCAGACAACACTATGGCCAGTAGTCAAGTATACTTCACTACCCAGCTATTCTCTTACACACTAACAGAGTATTAGC-TGTATACAGCCTGTCCTTTAATTACTAGTGTTATCTA

a score=134663
s chr3            92823051 5233 + 160039680 [encoded data, 5740 characters]
s HiC_scaffold_1 138214928 5330 - 233722169 [encoded data, 5740 characters]

a score=12100
s chr3            92824002 1529 + 160039680 GGATTGGGACCTGAGCAGGGACTGGGACAACGAACGGGTTGCCCACAAGGCTCTGGACTGGAACAGGGCGCTGGACGTGGCATTGGCTCTGGATGAGGAAGAGG------ACAAGGCTGTGGACGTGGACCTGGATTCTCACAGTGAACTGGGCGCGGA------CGTGGCACTGGGCGTGGTGCTGGATGTGGCACTGGTTGAGGAGCTGAGCATGGTTCTGGATACAGACAGGGTTCTGAAAATCGCCTTAATGGAGGACATGGGCGAGGTTCTGGACTTGGGCATGGCTGTGGACAAGGACGTGGGCGGGGTTCTGGACTTGGGCAAGGCTGTGGACGAGGATACGGACGGGGTTCTGGGCTTGGG---CATGGCTGTGGACGTGGATATGGACGTGGTGCAGGAACTGGGCACCTCTGCCGTGATGATTCTGGAGACCGGTCAAGATGCTGTGGCCTACAAGACCTTGGGAATGGGTGTGGG-------TCTGCACGTGGCCTCAGGT---------CTGGGCAGGAGACACCCCAAGAGGG--TTGCCGGGGACAGCTCTGGGA-----TCTTCCTCTGAAGGGAGGAATCTGGACAGGACACCTCTGCGGGGGAACTTGCCTTGGGCAGCAAGGGGAGGAAATCTCTACCC--TGCATTTGGGTCCACATCTTTGAG------------------AACAGCCTGAAGGGCGGCCCCGAGGTGGACAGTGGCTACCATAGATGGGCTCTGAGCGGCGGGGTGGAGTGCAATAGTTGTAGGA--------GCCTGAAGAGCATCTGGATGGCAGGCAGCTGCTATAACAGGGTTC--AGAATGTCTTGGTGGAGAGCAGCTGCGATAAGAAGGCTGGAGCCGACGAGGAGGGAGGCATCGGCTG---GTACTCTGAGACCGGCGCTGTGAAGTGTAGCTTCCATAGGTGCCCTGGGACTGGCATCGGGGTGCACAGGTGCTAAAGGTAGCCCCGGACCGACGCTGGGAGGAGCAGTTGCTGTAGGATGCTCGAGACTGGAGTTGGGAGGTGCAGTTGCCATAGGAAGCCTGTGACTGGCGCTGGGGGCCACAGTTGGTGTAGGAAGGCCCGGACTGAAATTGAGGCTCACAGTAACTGTAGGAAGCCTGAGATTGATTCTGTGGACCACAGCTGCTGTAAGAACGCCGTGACTGTGATTGAGGAGTGCAGCTACCGTAGGAGCCCTGATACTGGTACTGAGTGGAGAAGCCTccctggccctggccctggccctggcccACTGCGGGACATTCTACATAAGTGTAGCCAGGCTGAAGGGCTGGAGCAGGCATGTAGGTTGAAACCGGATATTCCACATAACGAGTCTCTGTATAGTACACTGGAG---GACACTCTACATAATAGGTCTGAGGAGGTTGTGGGATTTGCACGTAGGAAACCTGAGATTGACATGGAGCCTGGCATTGAACACAGGAAACCTGAGTCTGGCAGGGAGCCTGGCACTTTATCTCAGTGGTCTT------------AGGCTGGTATTTCACCTGGGTAGTCTTTGACTGGCACGGGGCCTGGCATTTGCCTTTGGTGGTC------TTACATGGAGCCTG
s HiC_scaffold_1 138215925 1325 - 233722169 GGTTCCGGGCTTGACCATGGAGCTGGAAGAGGAATGGG------------CTCTGGATGTGAACAGGGCTCTTCACACTCCCTGGGCTGTGGGCATGGATGTGAGTTCTCACACTGCAGTCCACGAGTTCCTGGA------------GCTGGGCATGGAGCTACACGTGGAGCTGGACGTGGTACTGGACGTGGTTCCGGACGCAAAG------AAGGTTCTGAAAATTGCC-----TTTGA----------------GGACATGGGCAGGGCTCTGGATTTATCCATGGTTTGGGGCGTGGATACAGACGCGGAGCAGGAAGTGGGC---------GACGTGG---CGGGCATAGCTCTGGACTTGGGTCGCGACGCTGTGG---CGAGCAGGACCTTTGGAGGGGACGTGGCTGTACTCGTGGTCTTGGCTCTGGACAGCGGTTA---------------------CCCCAGGATGGTCGTGGGGCACAGCTCTGGGAGCGTCCTCTGATGGGGGGAATCTGGACAGGACATCTCTGTGGTGGAACCTGCCTGGGGCAGCACGGGGAGGAAATCTCTATCCG-------GTACTTGGGTCC-ACATTTCTG-GGAGCAGCCTGCACCGGGGTGCA-------GAGAACTGTGGCTATTGTAGATGGGCTCAGAGCGCCGGGGTGGAGTGCAGTAATTGCAGGAATCTGGAGAACATCTT---GATGGCAGGTAGCTGCTGTAGGAGGGCTCAAACCGTCGTGGTGGAGAACAGCTGCGGTAAGAAGGCTCCAGCCTA--------CGAGAAGGGAGGCATCTAC-----CGGTGCTCTGAGACCGGCGCTGCCCATAGAAGCTCCCATAGGAGCGCTGGGCCTGGTACTGGGGTGCACAAGTGCTAAATGAAGTCCTGGACTGACGCTGCGGAGCGCAGCTGCTGTAGGAGGTCTCTGAGTAAAACTGGGGGGCACCGCTACTATAGGAAGCCTGGGACTGACGCTGGGGTAGGCAGCCTCTGTAAGAGCCTTGATACTGGCACTGGGTGGAAAAGCTTCCCT---GAGTCTGGGA----CACTAGGGG--ACGTTCTACATAAGTAGTAACAGGTTGA------------------------GGAGCTAGA-----------------ACAG-----GTATGTAGGTCTGGACTG--------------------------------GATACT----CTGCAT-AACAAGTTTCTGTG----------------TAACAAATTGGAGCACCTTCTACATA--------------GGAAGTCTGAACAGGGCA-------TGGGACTTCATACTGCACATAGGAAACCCCAGACTGGCA---TGGAGCCTGGCAC---------------------------------TGGACATAGGAAACTTGAGTCTGGCAGGGAGCCT---------CACACTTCACCTG-GCTTGCCTTGGA--CTTGCACTTTGCTTGGGTAGTTTTACACTTGCTGGGAGCCTGGCCCTTCACCTGAGAGGTCTTAGACTTGCATGGAGCCTGGCACTCCTCTTGAGTGGTCTGGGAGTGGCAGGGAGCTTG

a score=14693
s chr3            92824172 1398 + 160039680 TGCTGGATGTGGCACTGGTTGAGGAGCTGAGCATGGTTCTGGA-TACAGACAGGGTTCTGAAAATCGCCTTAATGGAGGACATGGGCGAGGTTCTGGACTTGGGCATGGCTGTGGACAAGGA------------CGTGGGCGGGGTTCTGGACTTGGGCAAGGCTGTGGACGAGGATACGG------------------ACGGGGTTCTGGGCTTGGGCATGGCTGTGGACGTGGATATGGACGTGGTGCAGGAACTGGGCACCTCTGCCGTGATGATTCTGGAGACCGGTCAAGATGCTGTGGCCTACAAGACCTTGGGAATGGGTGTGGGTCTGCACGTGGCCTCAGGTCTGGGCA-------GGAGACACCCCAAGAGGGT----TGCCGGGGACAGCTCTGGGATC------TTCCTCTGAAGGGAGGAA----TCTGGACAGGACACCTCTGCG---GGGGAACTTGCCTTGGGCAGCAA----------------GGGGAGGAAATCTCTA--------CCCTGC--------ATTTGGGTCC-ACATCTTTGAG-----AACAGCCTGAAGGGCGGCCCCGAGGTGGACAGTGGCTACCATAGATGGG---------CTCTGAGCGGC-------GGGGTGGAG-----TGCAATAGTTGTAGGAGCCTGAAGAGCATCTGGATGGCAGGCAGCTGCTATAACAGGGTTCAGAATGTCTTGGTGGAGAGCAGCTGCGATAAGAAGGCTGGAGCCGACGAGGAGGGAGGCATCGGCTGGTACTCTGAGACCGGCGC-TGTGAAGTGTAGCTTCCATAGGTGCCCTGGGACTGGCATCGGGGTGCACAGGTGCTAAAGGTAGCCCCGGACCGACGCTGGGAGGAGCAGTTGCTGTAGGATGCTCGAGACTGGAGTTGGGAGGTGCAGTTGCCATAGGAAGCCTGTGACTGGCGCTGGGGGCCACAGTTGGTGTAGGAAGGCCCGGACTGAAATTGAGGCTCACAGTAACTGTAGGAAGCCTGAGATTGATTCTGTGGACCACAGCTGCTGTAAGAACGCCGTGACTGTGATTGAGGAGTGCAGCTACCGTAGGAGCCCTGATACTGGTACTGAGTGGAGAAGCCTccctggccctggccctggccctggcccACTGCGGGACATTCTACATAAGTGTAGCCAGGCTGAAGGGCTGGAGCAGG---CATGTAGGTTGAAACCGGATATTCCAC-ATAACGAGTCTCTGTATAGTACACTGGA--GGACACTCTACATAATAGGTCT-----GAGGAGGTTGTGGGATTTGC-ACGTAGGAAACCTGAGATTGACATGGAGCCTGGCATTGAACACAGGAAACCTGAGTCTGGCAGGGAGCCTGGCACTTTATCTCAGTGGTCTTAGGCTGG------------TATTTCACCTGGGTAGTCTTTGACTGGCACGGGGCCTGGCATTTGCCTTTGGTGGTCTTACAT------GGAGCCTGGCCCTTCACTTCAGTGGTACTGGACTGGCATGCAGTCTG
s HiC_scaffold_1 138215861 1350 - 233722169 TGGTGGGAATGGAATTGGATTTGGATCTAGGCAGGGGCTGGGACTACGGATAGGCTCCCCA-------------------------CAAGGTTCCGGGCTTGACCATGGAGCTGGAAGAGGAATGGGCTCTGGATGTGAACAGGGCTCTTCACACTCCCTGGGCTGTGGGCATGGATGTGAGTTCTCACACTGCAGTCCACGAGTTCCTGGAGCTGGGCATGGAGCTACACGTGGAGCTGGACGTGGTACTGGACGTGGTTCCGGACGCAAAGAAGGTTCTGAAAA---------------TTGCCTTTGAGGACATGGGCAGGGCTCTGGATTTATCCATGGTTTGGGGCGTGGATACAGACGCGGAG---CAGGAAGTGGGCGACGTGGCGGGCATAGCTCTGGACTTGGGTCGCGACGCTGTGGCGAGCAGGACCTTTGGAGGGGACGTGGCTGTACTCGTGGTCTTGGCTCTGGACAGCGGTTACCCCAGGATGGTCGTGGGGCACAGCTCTGGGAGCGTCCTCTGATGGGGGGAATCTGGACAGGACATCTCTGTGGTGGAACCTGCCTG--GGGCAGCACGGGGAGGAAATCTCTATCCGGTACTTGGGTCCACATTTCTGGGAGCAGCCTGCACCGGGGTGCAGAGAACTGTGGCTATTGTAGATGGGCTCAGAGCGCCGGGGTGGAGTGCAGTAATTGCAGGAATCTGGAGAACATCTTGATGGCAGGTAGCTGCTGTAGGAGGGCTCAAACCGTCGTGGTGGAGAACAGCTGC-GGTAAGAAGGCTCCAGCCTACGAGAAGGGAGGCATCTACCGGTGCTCTGAGACCGGC---------------------------------------GCTGCCCATAGAAGCTCCCATAGGAGCGCTGGGCCTGGTACTGGGGTGCACAAGTGCTAAATGAAGTCCTGGACTGACGCTGCGGAGCGCAGCTGCTGTAGGAGGTCTCTGAGTAAAACTGGGGGGCACCGCTACTATAGGAAGCCTGGGACTGACGCTGGG----------------------------------------------------GTAGGCAGCCT--------------CTGTAAGAGCCT---TGATACTGGCACTGG------------GTGGAAAAGCTTCCCTGAGT---------CTGGGACACTAGGGGACGTTCTACATAAGTAGTAACAGGTTGAGGAGCTAGAACAGGTATGTAGGT------CTGGACTGGATACTCTGCATAACAAGTTTCTGTGTAACAAATTGGAGCACCTTCTACATAGGAAGTCTGAACAGGGCATGGGACTTCATACTGCACATAGGAAACCCCAGACTGGCATGGAGCCTGGCACTGGACATAGGAAACTTGAGTCTGGCAGGGAGCCTCACACTTCACCTGGCTTGCCTTGGACTTGCAC-----------TTTG-CTTGGGTAGTTTTACACTTGCTGGGAGCCTGGCCCTTCACCTGAGAGGTCTTAGACTTGCATGGAGCCTG

a score=10335
s chr3            92824271 1358 + 160039680 TGGGCATGGCTGTGGACAAGGACGTGGGCGGGGTTCTGGACTTGGGCAAGGCTGTGGACGAGGATACGGACGGGGTTCTGGGCTTGGGCATGGCTGTGGACGTGGATATGGACGTGGTGCAGGAACTGGGCACCTC----TGCC---GTGATGATTCTGGAGACCGGTCAAGATGCTGTGGCCTACAAGACCTTGGGAATGGGTGTGGGTCTGCACGTGGCCTCAGGTCTGG-GCAGGAGACACCCCAAGAGGGTTGCCGGGGACAGCTCTGGGATCTTCCTCTGAAG------GGAGGAATCTGGACAGGACACCTCTG--------CGGGGGAACTTGCCTTGGGCAGCAAGGGGAGGAAAT------CTCTACCCTGCATTTGGGTCC--ACATCTTTGAGAACAGCCTGAAGGGCGGCCCCGAGGTGGACAGTGGCTACCATAGATG----GGCTCTGAGCGGCGG------------GGTGGAGTGCAATAGTTGTAGGAGCCTGAAGAGCATCTGGATGGCAGGCAGCTGCTATAACAGGGTTCAGAATGTCTTGGTGGAGAGCAGCTGCGATAAGAAGGCTGGAGCCG-ACGAGGAGGGAGGCATCGGCTGGTACT-------------CTGAGACCGGC------------GCTGTGAAGTGTAGCTTCCATAGGTGCCCTGGGACTGGCATCGGGGTGCA------------------------------------------CAGGTGCTAAAGGTAGCCCCGGACCGACGCTGGGAGGAGCAGTTGCTGTAGGA-TGCTCGAGACTG-GAGTTGGGAGGTGCAGTTGCCATAGGAAGCCTGTGACTGGCGCTGGGGGCCACAGTTGGTGTAGGAAGGCCCGGACTGAAATTGAGGCTCACAGTAACTGTAGGAAGCCTGAGATTGATTCTGTGGACCACAGCTGCTGTAAGAACGCCGTGACTGTGATTGAGGAGTGCAGCTACCGTAGGAGCCCTGATACTGGTACTGAGTGGAGAAGCCTccct---ggccctggccctggccctggcccACTGCGGGACATTCTACATAAGTGTAGCCAGGCTGAAGGGCTGGAGCAGGCATGTAGGTTGAAACCGGATATTCCACATAACGAGTCTCTGTATAGTACACTGGAGGACACTCTACATAATAGGT------CTGAGGAGGT----------TGTGGGATTTG-----------CACGTAGGAAACCTGAGATTGACA---TGGAGCCTGGCATTGAACACAGGAAACCTGAGTCTGGCAGGGAGCCTGGCACTTTATCTCAGTGGTCTTAGGCTGGTATTTCACCTGGGTAGTCTTTGACTGGCACGGGGCCTGGCATTTGCCTTTGG------TGGTCTTACATGGAGCCTGGCCCTTCACTTCAGTGGTACTGGACTGGCATGCAGTCTGAG-------AAACTTGAACTGGGCATGGTGCAGCACATTCCAGAACTTTCATCTCACATGGAGCTT
s HiC_scaffold_1 138215864 1346 - 233722169 TGGGAATGGAATTGGATTTGGATCTAGGCAGGGGCTGGGACTACGGATAGGCT------------CCCCACAAGGTTCCGGGCTTGACCATGGAGCTGGAAGAGGA-ATGGGCTCTGGATGTGAACAGGGCTCTTCACACTCCCTGGGCTGTGGGCATGGATGTGAGTTCTCACACTGCAGTCCACGAGTTCCTGGAGCTGGGCATGGAGCTACACGTGGAGCTGGACGTGGTACTGGACGTGGTTCCGGACG-----CAAAGAAGGTTCTGAAAATTGCCTTTGAGGACATGGGCAGGGCTCTGGATT---TATCCATGGTTTGGGGCGTGGATACAGACGCGGAGCAGGAAGTGGGCGACGTGGCGGGCATAGCTCTGGACTTGGGTCGCGACGCTGTGGCGAGCAG----------GACCTTTGGAGGGGACGTGGCTGTACTCGTGGTCTTGGCTCTGGACAGCGGTTACCCCAGGATGGTCGTGGGGCACAGCTCTGGGAGCGT------CCTCTG-ATGGGGGGAATCTG----GACAGG-------ACATCTCTGTGGTG-GAACCTGC----------CTGGGGCAGCACGGGGAGGAAATCTCTATCCGGTACTTGGGTCCACATTTCTGGGAGCAGCCTGCACCGGGGTGCAGAGAACTGTGGCTATTGTAGATGGGCTCAGA---GCGCCGGGGTGGAGTGCAGTAATTGCAGGAATCTGGAGAACATCTTGATGGCAGGTAGCTGCTGTAGGAGGGCTCAAACCGTCGTGGTGGAGAACAGCTGCGGTAAGAAGGCTCCAGCCTACGAGAAGGGAGGCAT-----CTACCGGTGCTCTGAGACCGGCGCTGCCCATAGAAGCTCCCATAGGAGCGCTGGGCCTGGTACTGGGGTGCACAAGTGCTAAATGAAGTCCTGGACTGACGCTGCGGAGCGCAGCTGCTGTAGGAGGTCTCTGAGTAAAACTGGGGGGCACCGCTACTATAGGAAGCCTGGGACTGACGCTGGGGTAGGCAGCCTCTGTAAGAGCCTTGATACTGGCACTG----------------------------------GGTGGAAAAGC------------------------------TTCC-----------CTGAGTCTGGGACACTAGGGGACGTTCTACATAAGTAGTAACAGGTTGAGGAGCTAGAACAGGTATGTAGGTCTGGACTGGATACTCTGCATAACAAGTTTCTGTGTAACAAATTGGAGC---ACCTTCTACATAGGAAGTCTGAACAGGGCA-------TGGGACTTCA--------------------TACTGCACATAGGAAACCCCAGACTGGCATGGAGCCTGGCACTGGACATAGGAAACTTGAGTCTGGCAGGGAGCCTCACACTTCACCTGGCTTGCCTTGGACTTGCACTTTGCTTGGGTAGTTTTACACTTGCTGGGAGCCTGGCCCTTCACCTGAGAGGTCTTAGA-CTTGCATGGAGCCT

a score=20755
s chr3            92841863 1172 + 160039680 ATTCTAGACAGCACTTTCAGGGAACATAAAATGGAGCCAACACCATTGATGATCCTGCTAACAGAAGATTCTGGATAAAATTCAGTCAACTG-GAGAAACAGAAAGAAATCAATTCACCACTCCAAAGAGTAGTGTCTTATTATTCTCTTGTTATTAGATCTTATAGAAAAGTA-CCCTGACAAGCTGATTGATGGTCCACCATCT---ACAAAGAGGTCTGAAAACtgttttg------------tttttttgttttgttttgtttttttttttgtttttttttttttAGAAAATAAGTCTTATTATTCTCTCCCTCCCCCTTGATGTTTCCTACACT-----AGACG-ATTCTGAC----------------TTTCTTCTAAAT---GGGCTACAAA-GCCAGCCTATATTCAAAGAAAACAGATGACTTGTTCATTTTCTGATCTCTGATATCAAGG-----TGGTGGTGGTATGCCATATTCTAGAACGTTGGTTTTCTAACAGCTAAAGAGCAAATAGTGATTCTGAAAACCAAGG-CTCTTTAGTG-GTACCATCCTTCACATC-TCCCAGCTCCTATTCACTACTTCTTTCTACATCTTATTCTGTCCATCT------------CTTCTTTGCCATACATTCATTTTTACTTAGTAGAAAAGA--AGAGTACATAATAGG-----AACATGGCAGAAGACCAAGGATTAAACACTGAAGCCCTTTTATTTGGGCCCTACTGTCTTCCCAATAATGAGGCAGTGCCTGTATATG--------TCACTTTCACAGCTGGAATAAGGGAGACTCTTCTCTACTCCCAGAACTAGAAGTCCTGGAAGGCCCTTAAGACCAAGAGAAATCCTAGAAGACAGACATATCTAGATATCTGTTCACAGGCCTGTTGTGGT----CAGCCATTCCATGATCATGTATTCATTTACTCACTAATTCAGTAAATATGCATTCTCTATTTG-GTCCTGGGTTTTGCAAGATGCTTTTGTCATAAAGATTAGCTAAGTTGCCTTGAGGACTTAATGTGTAAACAATGCACAGTAAAACATTCTACTAAGTGTTATAGCAAAGCTCATGTGACCGAGGGCTGAGCTCCTAAGAAGA-ATTATACTAGGATGATGCCACACCTAGTTGTATGCCATTCTGCTTTTCCAAATAAAAACTGTTTAGGGTGGAATTGTTGCTAGAATTCCCTCTTCTTCATTCACCTGA------tgtgaacacaaaaactag
s HiC_scaffold_1 138236869 1140 - 233722169 ACTTTGGAAAACACTTGAGAGGATC-----------CTGGCACTGCTAATG-TTATGCTGGTAGCACATGTTTGGTAAAGTTAAGTTCACTGAGAGAAATGGAAAGTAATCAGTGTACAATATCAAAGATtgac-tttcattgttttcttgctGTTGAATTTCATAGAAACCTAACCCCTACAA-CTAGCTGA------ATTAGCTGAAACAAAGAGATTTGGAAACTGATTTGCATGGGGATGAATCTaattgattctctctctctctttctctctctctctctctct------------------ttctctctctctctctc-atttaccCTATGCTTCCACAGAGGTATCCTGACCATCTCTCTCCATACATTTCATCTAAAGCAAGTTCTGCATGTGCCTTCTTGTCCTCAAAAGACATAGGCAACTT----ATTTTCTGACC--------CAAAGATGTTTAGTAGGGATAGAACATATCCAAGAATATTAAGT--------------GGGAAGGTGGTAATACTGAAAGCTAAGATCTCTGAAGTTTGTAGCAAACTTACTGTCCTGCTGGCCCATAGTGtcaccttcctctctctcttcagtCTGTCCTTCCATGCCCCTGAAACTTCTTTACCAGGAATTC-CCTAGGCTCAGTGGAAGAAATCAGAGC-CGTAACTGACAGTTGATAAGGTTGAGAACTGAGTATCAG-CTCTGGCATCCCTTTACCCGGACCTGGATA-----AAGAGAGTGAGACACTGCTTGTATATGCAGATTACTCTCTTTCACAACTTGGATGATGTCAACACTCCT-----------------AATCCTG--AGGCTC----------GAGGGAT---------------TGCCCAGATATCTGTCCACAGGTCTCCTGTGGTTAGCCAGCCATTCCACTCTAATGTATTCACGCATTCaataattcaataaatatgtattgtaTGTTTTCATCCTGGATTTTGCAAGATGCTTTTGTTATAAAGATGAGCCAAGTTGCCTTGAGGACAT-ACATGTTTACAACACACAGTAAAACATTTTACTATGTGGTGTAAAAGGGCAC-CATGACCCCCAAGTGAGTTTCTAACGTGCTCTTATGCTAGAACAATGCCATGCCAATTTGTATACCTTCCTGCTTTTCCAAGTGGAAAAT-CTGAGGACAGAAGCTATACT--ACTTTAATGATCTCCACACACCTAGGAATACCATAAACAAAATGACTAG

a score=69877
s chr3            92849833 3081 + 160039680 TAGTGACCTCACCCACATTTCTGAATCAGGCTTATGCCCCTA----------CTGAGCCCTAGTTATCAATAATGACCTGGAGAGAATGCTG--GGAGAAATAAGCAAGAAACCAATAAAGATTGTTAGGAAAGATT-TTATTTGGAATCACAGAAGGAGA-TGAGA---------CTAGTGAGTAAAATTTGAACTTCACTGAAAAAAATTCATCATCTCAAAATTCAGAACACAGAAAACA-AGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGT---------CCCCAGACTGCTGGTTaccaccac------------agcagccactgc---------tgccacagca---------accactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT---GTGTCGATGGCGA---CGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTT-GGGAGGAAGTCTGTAAACCTAAAGAG-AAATATAAAAGCCATCAGCAGAAGTATCATGCAGACATATCCATCCTCAATTCTGTTAGACACTGATTCCAAGACAAACTGTTTCATGAACAAGACCTATAATT---ATTGGGGACCTGATGTTAAGTGAAATTGGTTGCATTATAAG--------ATCTCTGATAGTATATTTTCCACCAGTAAGTGATTCTAAACACCTTCTGACATAGTCCTAAGATTCCCTAGGCACTGAGACAGAGCTCCTTGACACACAGGAATCTCAACATGATGGACTT---------AGCTTT------CTTTCACACCTGTGAGACGCTGT----CCTCTCTGAGAGCATTTTCTAGAAGAGGATTATAGGAGATGATGTTAAAGACCCTAACACCAGTAACCCAACT------CTCCTGACACCTCCTGACTTAT-TATGC-----------------TCTCCCATTGCTATTTTCCCAGTTGCTTTTCTGTCCCAAACTGAGACCATCACAGCCCGAATACTTGTTTC--ACCAGGTGTTAACCAGACCAAGAGA-------GGAGCAGACC----ACCATACGCAAAGATAA-CTTCAGCTTAAGTCGAGATGAGACTGAAAAACAACCCTTCACCT----TGGCTTCCCTGCCCCTGGGGTCTCCCCCACCTCCTTCTGCCCTCCTTCCAAGAAGTTCTGGCTCTCTCCCTCTCCAACCT---TCCTTTCTAAGCACTCACTTGTTGAGCAGAAGAAGCAGGGCCTGAAACTGGTAACGCTGAGGACTGGTGGACCTAGCAC---AGGAGTCCTTTTATGCTAGGCCCGAGAAATTCTTAGAAGTGAGACACAGCATGTGTATGTAGAGCAGTCACTTTCACAGGCTGGAATGAAGATGACTCTCCTCATACTCCCTAGTCTGGAACTCTCGGATCTCTCTGGGAATAGTTCAAGAGGAATATGGTTAGTTAGAGACTACAAA--TATCTGTTCACCAAGTCTATTGCAGGCCAGCCATTCCACCTTCAAGCACTCACTCATTTACTAATTCAGTAAATATGTAACATCTCTATTACTTAGGTCCATAATTTTGCAAGATATTAATGCCA-AAATATGACAT-GATTGCCATGAGGAACTTACACTCTTAGAGCATGAGTATGCAAGCAATGGTTTACAATGGTGTCATGTGACTATGATCTCTGGTTGGCTCCTTATTAGCTCTTACTATGTGTGGTGTCACAGTCTTTCTAATC----------TTCTAGGTAGGATACA--TTTTAGTCAGCTGTGGATTCCTCATACATTGTACATTGCTTGACACAGCACAGTTAGGAAGAAGAT--TAGCTATCAGGAAAGAGAATGAC---------TGAAGTACTGAGACAGATACTAAGTTAGTAGCTCAGCAGCCTTTGGGGT-TCAGAGTCTCATGAGGCAAGACAGAGTTCCAGTAATACAGAGTATCTTTTCTATTAGTACCAAATACTAACTCTAGAGATTAA-CTATCTGAATAGATAACTCTAT---------------TATGAATGAGGCTGGGTTGGCAAAGTATAATC-TAAAGGAATCCATGAGGTGTAGGAGCTAAAGCCTTATTGAGC-------CCATGGACCTAGATTCACAG--AGCACATGGA------AGGGATGTCATAATG---AGAGATGAGGAAAGAAGCAAATATTAATTTTACTTTAGAGGTTATTACAGGCTTTTGCTTTAGGGGTGATGTGAAACTTCTTAAGTATTAGCACTGTTGCGTTAGTGAGCTATCACAAGCTTTCAGCAGACACAATGAAAGTGAATAAAT-TAAGAAA--AGTCTGATGTTTCTATCTGTTCCAATTCAGCAACACTAACTAGTACACACAGAGTTATATTACCATGAACAGGTGATTATCACGACATTTAATGAACTCATCATG-ACACTGGGTACTCTTTG-AAGAGAGCACAGCAATTTTGTGGCAAGAGCCTGTCAATGTTTAATAGGAATATGCACAGAAGGATATTAGTTAAATCCAATTGTATGAGCTTTGTGGCAATTAAATGAGTATTTTAAAAAATCTACAAGTAGATAAAGTCACCAAAGCAAAGAACAAATGCTAAG---------------------ACAT-----TTTTAGTGGGTAGGTAAAGAAGACAGATTAATCTGTTTTCTtttgttttgtttcttaaactgtga-aacacatcctgcacttaaggaaagggtttatttaggctcacagttctaggagttcaAAGTTTAGTAGCACTATCTGATAATGGTCTTTTTTTTCCTGGCAGAGCTCCAAGGAAGTTCAAGCATCACATGGCAAGAGACAGGTCACTGGTATGTAT--ATATGA-TCCCACTTCCTTTTTTTCTTCTAGAGTCACCAAGATTTAACTGAGACAAATCCATCCCCAATAAATTTATCTACTCGTAATCACTTTCCACTTTCAGATGCCACATCTGTAAGCA
s HiC_scaffold_1 138257802 3121 - 233722169 TGGTCATCTGATCCACAGTTCCAGACCAGACTCTGACCCCAAAAGGGTGAAGTTGAACCCTGGCTGCTACCTCTGACCTGT-GAGAATGATGCTGACAAAAGAAACAAGGGGCCGGTGAGGCTCTGCATGATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATGACCTTCCAAAGGAACAGCTCAGTCTTTCAGAGCCCAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCT------------------------------------CCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGAC------------TGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTTTTCAAGAGGAAGTCAATAAGCctaaggagaaaattttaaaaccatcAGGACAAGTGTCA---AGGTATATC---CTTGGATTTCACTGGGCcct-atttcaaaacaagctaCTTTGTGAACAAGATCTATAACCAGAATTTGGAAactgatacaaaataaaattgcccacagtagaaatattttctctctctagCATTTCTTTCTCCTGCAATGAAAGATTCTG---ACCTTT-------ATTCTA------CTTGGGCTTTAATACC-AGCCCC---ATACAAAGGACTGTGAACATAGCTGGCTCTCATTCagaagcttttctttatttttacacatGT----CCATGTTGAACCCATCTGAGAACATTTATT-TCAGAGGACTAGACAGAAAGATATAGGAGGTCCAAATGTCTGCAGTTTGACTGCTGTggttctaacacacacacacacacacacacacacacacacacacacttctctcAATGCAGTTTACTTAGTTGCATTCCCTCCCTAAAATGGGACAGTTACAGACCCATGATCTGCTTCTTTCCAGACACTTACCAGATTAAGACAAGTCAAGAGAGAATATCCTTAACAAAACAGTAAGACAAGCCTAGGCATATGTCAACTGTAGGCTAAAGAAT-ACATCTCACCCAAGGggactcctcctcctct------tttcatGCCACCTTCTACCCTCTCTCCAAGGAGTCCCGCAGGCCTCCTGCATCAGACCAAGTCTTGGTCAAGCACTCACCTAGTCAGTGGAAGCAGTAAGATCTG----TGCTA--GTTGAGGACTGAGGAACCCAGAGCTAAAGGAGCCCTTTTATCCTGGGCCTGGCATTTTCTctagagtgaggcagagcctaaGTATCCAAAGCCAATACTTTCACA-ATTAGCCTGAAGGTGACTCTTCTCACATTCCCAACCCTAGGGCTCTGGGAGTTCCCTGGGCA-AGGCCAAGAAGAATCCCGGAAGCTAACGATTGCATAGGTATCTATCCA-CAGGCCTCCCACAGGCCAGCCATTCCATATTCatgcattcactcattcattaattcaagaaatatgtattatttata----tatggCCCATAATTTTGTAACATATCAATGACACAAAGTTGACATGGGTTACTCTGAGG---------TCTTACCACATgagtatgtaaataaatatt------------------------tttttgtttggttact--ATAGCTATCTCCTAGGGTAGTTT--CAGTCTTTCTACCTTAGAAGCCAATTGAAAGTCAGATAtatgttttagtcttttttggATTCCATGTGCTTGGTAAAGTGCCTGGCACAGTAAATTTAGGAAGAAGATCACAAACATTGGGAAAGACAAAGGCAGGTGTTTATAGAACACTGAGGCAGAGG-TGTGGCCTTAATGAAGCAATCTCGAGGATCTCAGAATCCCTTACAGTAAGACTGATTCCCAG-GAGGTAGAATATTATTTCCACAGAGACCAGAAGTTAATTCCTGAAAGTAAGTTACTTAAAAGCATGGCTCCATGGCAGTGAAAGCAGGTGGGAACAACAGTGGCCGGGTAGTGAATGGGCACAAAGGAATCAACAACGCATAGAAGCTAAGGCCTTGAGGAGCAAGACAGCCA--GCTCTGGAAGGGCAGTAAGCACACGGATACAGCTGGGGTCTTGAGATGTGAAGGGCTTAGGagagaaacaaatattaatttgAAGTTGAAAGTCCTAACAGGCTTTTCACTTAG------TTTAAAAGTGCTTGAGGATTACAATAGCTATACTATTAAGCTACTGTGTACGTTTAGGTGG-ATACTCAAAGAGAAGAGATGTAAGACATTGGTGGGACTTTTAAGTTGACAGTAATTCAGCACCTCCAATTAGAACAC-CAGGGTCACTTGGCTTTAAATGTGGAATTTTCACCAAACTTAAAGACTTCCTAATGTAATCAGGGTGTccttttcaaaagaagacaatctCCTGGTGGTA----TTTGCTAGGCCTTAATAAGAATATG----GCAGGGTATCatctaaaacaaaatgaattgcCTTCTTaataatgaaatggtcacttgaaGATATA-AAAAGTGGATAAGTTTACTAAAGGATAACAAGCATGCTAAGGGGAGAAagagacaaaatgaaatatagataTTTCAGTGTGTAGGGAATTTAGATatattagtctttttcttttatttttatttttt--actgtaacaaaatactctGA----AATGAAGAGATCCATTTTGGTTCACATTTATGGGGGTATAAAGCTTATGGGTCTTGTCTGGTGATGGCC---TTTTTCCCAGTGGAGTCCCAAGCAATACAGAAGATCACAGGGCAAGAGTCAGACAGCATGTATGGGTTCATGTGACTCTCGCCCTCTTCTTAT---------------GGATATCACT---------------CTAATGA--TTATCTAACCTTAATCACTTTC------CAAAGGACACACTTATAAGCA

a score=28019
s chr3            92849875 722 + 160039680 CTGAGCCCTAGTTATCAATAATGACCTGGAGAGAATGCTG--GGAGAAATAAGCAAGAAACCAATAAAGATTGTTAGGAAAGATTTTATT---TGGAATCACAGAAGGAGA-TGAGA---------CTAGTGAGTAAAATTTGAACTTCACTGAAAAAAATTCATCATCTCAAAATTCAGAACACAGAAAACA-AGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGT---------CCCCAGACTGCTGGTTaccaccac------------agcagccactgc---------tgccacagca---------accactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT---GTGTCGATGGCGA---CGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTA-AACCTAAAGAGAAATATAAAAGCCATCAG
s HiC_scaffold_1 138197229 733 - 233722169 CTGAACCCTGTTTGCTAACTCTGACCTGT-GAGAATGATGCTGACAAAAGAAACAAGAGGCTGGTGAGGCTCTGCAGGGAATactttattatttagaaatatagaaGAGGAGTGAGAAACTGACCATTTGGAAGTAAATCATTACCTTCCAAAGGAACAGCTCATCCTTTCAGAGCCTAGGACAATGAAGACAGATAAAGGAGGGAGGGTGAGCAGGGAGGAACAGGTTTTCTGCATGTTGGTTCCTCCAGCACTGCTTCTCTGAGGTCGTT-TGGCTCAGGTCAGCAGCAGCAACCAGAGCCCCCAGACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCT------------------------------------CCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGAC------------TGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACA-TCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACATATCAG

a score=11488
s chr3            92850013 536 + 160039680 AAAAAAATTCATCATCTCAAAATTCAGAACACAGAAAACAAGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACA-TGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccacc------acagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACAT
s HiC_scaffold_1 138135413 404 - 233722169 AAAAGCATTCATTATAATAGAGCTCAGATC-CAGGAAA-AGGAAGATAAGGAGAAAC-----------------TATCTGACCACTTGCTTCATTCAAGTCTTCTTATTTAAG---TTCAGAGTCCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCTATAGCAGCTG--GAGACCCCAGCAGCTG--------------------------------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTG------------------------------------------------------------CAGCAGCCCCCAGAACTGACCCTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACT---------ACTTT--GGGGCCTTTAGAGGT------------AGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACAT

a score=9427
s chr3            92850024 565 + 160039680 TCATCTCAAAATTCAGAACACAGAAAACAAGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtca-----ctgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGG---AGGAAGTCTG--TAAACCTAAAGAGAAATATAAAA
s HiC_scaffold_1 138377488 454 - 233722169 TCAATTCATGATTTATATGAGAGAGTGTAATGAGGAAAG------CATCAGGAGGTAATGGGCTCTG-GATCAT--CCATTTTCTCAATAGCT----------CCTCCTGACCCAGCTCAGCAGCAG-CCTCAGA---------GccagggcagcagccagagcctCCACTGGGGTCAC-ACT--CACAGCAGTCAGGAGCCTGGTGCTTGCAGTG-----------------GTGTTG--------GAAGAGACT----GGGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAA------------------------------------------------------CTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTG----TGGATATTTTGGA-TGTACTTGGG---ACACTTTGGAAG-GCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGGAGTTTAGTGAGTCCACCTAAACTAAATGAGAATAATGAAA

a score=8413
s chr3            92850035 514 + 160039680 TTCAGAACACAGAAAACAAGAAGG--GAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggca---cttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACAT
s HiC_scaffold_1 138528306 432 - 233722169 TCCAAGGTACAAGAAAGAACAGGGTTAAAGAAGGCAT--CAGGCTGGGGTAGACACAAAACTATTTGGTTCTTCCTTATTTGCTCTTTAGAGGTCCTCAAGGCCCAGTGCAGAAGGAGCACCCTGG---------GCCATGGCAGCAGCCTGAACCCCCAA----------GATGTCACACTCACGCATGATCCAGCAACTTCTG-----------GGTGTGGAACTGGAACGGAAGAG----------CCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTG-AGCAAC------AGCAGGA---------------AGAGCCTGGAGATCAGCAGG-----------GTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATG------------GGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACAT

a score=12222
s chr3            92850040 579 + 160039680 AACACAGAAAACAAGAAGGGAGGGAGGAATAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT--GTGTCGATGGCGACG----AAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAg--gagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAAACCTAAAGAGAAATATAAAAGCCATCAGCAGAAGTATCATGCAGACATAT
s HiC_scaffold_1 138368834 468 - 233722169 AACCCAGGGAATGGAAAGGG--GGATGCAT--CAGGCTGCATCAGACTCTAGAATGCTGGGTCATTTC------------AAGAGCTCTTCCTGGGCCAGCTTAGCAGCAGCCCCCAGA---------GCcatggcagcagccagagcccCCATTGGGCTCAC-ACT--CACAGCAGTCA--------------------------GGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACT----GGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTT------------------------------GAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAG---GAAGAGACCAG--------AGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGT---------------GCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT--GTTGTGACTTTTCCAACCTGAAAGTA---ATGAAACTCTTTAGCTGTACAAACCTGAAGAcacat

a score=8693
s chr3            92850053 545 + 160039680 AGAAGGGAGGGAGGAA--TAGCAGGCAGGAACAGGTCCTGTGAACATGGTTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAA----ACCTAAA-GAGAAATATAAAAGCCATCAGC
s HiC_scaffold_1 138398494 427 - 233722169 AGAGTTGAGGGAGGAAAGCATCAGGAAACAGTGGATTCTG-GATCAT--TCATTTTCCCAGTAGCT----------CCTCCTGGTCTAGCTCAGCAACAGCACCCAGAGCCATGGCAGCAACCAGAGTCCCCACTGGGCTCACACT------------TAGAGCAGTTA-------------------GGAGCTTAGGGCC-TGCAGTAGGAGCAGAGGA----TGCTAGGCCTATGGTGGCTCAGGCCGCAGCCACAACCCACAGAAATACAGCAGCC-------------------------------------CCAGAGCTGAAGCC------------------------ACAGCAGGAAAATACTGGA---------GGAGGGCATGATGCTGGACACTGCAGTGGGCATTTTGGAG---GGCACTTCAGTGGGTATTT-TGGGTGCACTTGAGAGGGGACTGGCactgctgctgcttttgctgacAGGATGTCTT--AGAAGAGTTCAGTAAGTCCATCtaaactagaaaaatgaaattctttaac

a score=15803
s chr3            92850099 492 + 160039680 GTTTCTTTCT-----TTATTGCTTG----TCTGAAGCCTTCATGACCCAGGTCAGCAGC---AGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccaca---acagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAAACCTAAAGAGAAATATAAAAGC
s HiC_scaffold_1 138300136 427 - 233722169 GTTTCTTTGTGCTTCTTATGGCCCGGCCATCAGTAGCCT-------CCAGAGCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCA------------------------------------------------------------GAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTA---------------GGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATT-TTGGCAAGAGTTAAGAGATCctagatgaaaaaatagaaac

a score=12117
s chr3            92850100 394 + 160039680 TTTCTTTCTTTATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGC-AGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaacc--actgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcact
s HiC_scaffold_1 138196557 343 - 233722169 TTCATGTCTCTAATTCTTCTCTTCTGGGATCAAGGTACACATCAGCAATTAGCCTCCAGATTGCTGGCTACTTCC---TCATCCACAGCAGCTGGAGCAGCCTGAGGGCTG--------------------------GCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAG-------------------GCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGGGACACTTGGGAGAGCATTTTGGTG------TAGGACCCTTGGATGTAGAAATGTAtt

a score=15654
s chr3            92850111 438 + 160039680 ATTGCTTGTCTGAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACAT
s HiC_scaffold_1 138145806 347 - 233722169 ATTGCTCTTCAAGA---TTAAGGATCCCCTTCAGCAACAG-CCCCAGATTGCTGGCTACTCCCCC------------CTCCACAGCAGCTGGAGCC-CCTCGAGGGCTG--------------GCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCC------------------------------------CCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGGGGTG------------------------GGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACAT

a score=12843
s chr3            92850122 430 + 160039680 GAAGCCTTCATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT--GTGTCGATGGCGACG----AAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACAC---AggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCT
s HiC_scaffold_1 138408295 340 - 233722169 GAGCTCTTCCTGGGCCAGCTCAGCAGCAGCCCCCAGA---------GCcatggcagcagccagagcccCCACTGGGCTCAC-ACT--CACAGCAGTCA--------------------------GGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACT----GGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCC------------------------------------------------------CCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTT

a score=21771
s chr3            92850127 463 + 160039680 CTTCATGACCCAGGTCAGCAGC---------------------------AGTCCCCAGACTGCTGGTTaccaccac------------agcagccactgc---------tgccacagcaaccactgct---gccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT---GTGTCGATG---GCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAAACCTAAAGAGAAATATAAAAG
s HiC_scaffold_1 138728643 458 - 233722169 CCTTGTGGCCCAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCC------------------CCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGG-----TGGG--------CAGGGGGAC-----------------------------TTGGGTGGGCATTTGGGGGTGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACA-TCTCGGCAGGAAATGAATGCGCTGAAAGA-CAGTACAAAGG

a score=11911
s chr3            92850130 485 + 160039680 CATGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCTGTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAG--------GAAGACA------CAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGT--CTGTAAACCTAAAGAGAAATATAAAAGCCATCAGCAGAAGTATCATGCAGAC
s HiC_scaffold_1 138154326 431 - 233722169 CATGAGCTACTTTAACAACAGCCTCCAGACTGCTGCTT------------GCTGCTCCCTCCACAGCAGCTGGAGCCCCT-------TGAGGGCTGTC--------TGTAGCCCTCAGG-------CAGTGGCAACTATAGCAT----------TGTGGTGGTTCAGGCAGTAGCCACCACTCC-------------------AGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACT---GGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATA-TCTTCAAAGGCAATAATTCAGGACCT---GAGACAGTCAAATTGCGTCAGAAAAAGTCACAGGCCAAC

a score=15253
s chr3            92850132 425 + 160039680 TGACCCAGGTCAGCAGCAGTCCCCAGACTGCTGGTTaccaccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT--GTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGA
s HiC_scaffold_1 138333226 358 - 233722169 TGGCCCAGCTCAGCAGCAGCCCCCAGA---------GCTatggcagcagccagagcccCCACTGGGCTCAC-ACT--CACAGCAGTCA--------------------------GGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCC------------------------------ACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTG---GGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACA-TCTTGGGA

a score=18000
s chr3            92850141 440 + 160039680 TCAGCAGCAGTCCCCAGACTGCTGGTTac------caccacagcagccactgctgccacagcaaccactgctgccacaacagtcactgctaccaccactgctacAGCATCCAGAGCT---GTGTCGATGGCGACGAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCT------TGGGAGGAAGTCTGTAAACCTAAAGAGAA
s HiC_scaffold_1 138180360 374 - 233722169 TTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgag-------ggctg--------------------------gctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGG---GACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGC------------------AGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGG---------------CCTTAGGGGGACACTTTGGGGGGCATTTTGGGGT------------GGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGGTGAGTAGAAATTCAGGAGCTAAGAGAGAA

a score=8174
s chr3            92850266 321 + 160039680 GAAGAGATCTGTGAGGCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGCAGCCACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA---CACAggagggcacttgggagggcacttagggggacattttggggggcatttaggagtctggcatttgggagggcacttgggggtgcacttgggaggAGGCTGGCACTGTTGCTGGCTCTGCTGGCAGGACATTCTTGGGAGGAAGTCTGTAAACCTAAAGAGAAATATAA
s HiC_scaffold_1 138417148 253 - 233722169 GAAGAGACT----GGGCCTGtggtggctggggcagcagtcACCACCCCCAGAACTA------------------------------------------------------GAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACT----ATGTGGACACTTGGGA-TGCAATTGGG---GCACTTTGGAAG-GCTTGGCA---TGATTGGTTTTACTGGTAGGACA-TCTTGGAGTTCAGTGAGTACACCTAAAGTAAACTAGAA

a score=3533
s chr3            92850281 63 + 160039680 GCCTGTGGTGGCTCAGGCAGCAGCCTCCACCCCCAGAACTGCAGCAACCACCAGAGCTGCAGC
s HiC_scaffold_1 138470347 63 - 233722169 GCGTAGGGGGGCTCAGGCAGCAGCTGCCATCCCAAGAACTGCATCAGCGTCCAGAACTGGAGC

a score=8529
s chr3            92850317 183 + 160039680 AACTGCAGCAACCACCAGAGCTGCAGCAGCC------ACCAGAGCTGCAGCAACCACCAGAGCTGGAGCCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGACACAggagggcacttgggagggcacttagggggacattttgg---ggggcatttaggagtctggcatttgggagggcacttggggg
s HiC_scaffold_1 138154468 188 - 233722169 AGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACTGG-GGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGC---ACATTTGGGAATACACTTGGGAG

a score=3924
s chr3            92859158 85 + 160039680 ACTAAGAATACTCATCTACTCACAGGGAGGATATGCCTGCCATTCATTAAGCCATAAGCAGCTCATGATTCCCTGTAGATAACCA
s HiC_scaffold_1 138264474 85 - 233722169 ATCAAGAATATCCGTCTAGTTAGATGAAGGATTCACCTGCCATTCACAGGGCCATAGGCTGTTTATGGCTCCCCCAAGATAATCA

a score=19917
s chr3            92859254 2313 + 160039680 GACAGGATGGGAAGTATGACAG--CTCCATCCCAGACCT-ATTAGGATCATTCCTAGTG---CTCAGCAGCAAA----CAACTGCATGGGCTTTTGACTATGCTCCAATTACCCACTA--CCTATGGGCTTCACTGATGTTGAACA-ATGGTGCAT---GAAGGGTGCACCTGCAGCGCAGACTTTCAATAATTCCCAAATATACTTTTTCAGGTGAGAGACCC--------CATCTTTTGCTAAAGTTTGTAAATCTCTGGCTTAAGTTTCATG-TGAGCTTGTCAGG--------------CAGCCTCTCCTC-AATCTAAGTTAAGCATCCTTCCTTTGTGCTCCCATAATATC-TACCTACTGTAGTAAATATTTTATCTTTGCTGTTTGCCATGATAGCTTAACCAGGACACTGAACTTACCAGAGGCAGAAACCACACATTCCTTATCTCAATGTTTCCCACACCCATCTCAAAG-------CTCAGAGCATGT---------ACACTTTGTTCATTGACTAAGGGTTATAAGCACTTTCCAGAGGCGTGAGAACTGAGTGGTAAAGGTCCAGGAACAAATAATACAGATAACTTTCAAGATGCCAAGATAAAACTCAACTCTGCCTGGAACTTCTAGAAGGATCTTAATGTATCCTCGGGACTTAATGTAAGTCCCTAACTACAGGTCTCCTGGCAGTCCCACCTGGGGAGGCCATCAGGCTGGGTATGGGTATTCCCAAGGACGTTACTCACTGCCTACCCTTCTCAGTGCTTGGTGCTGCATACTCTGTAGTGCTTTGAGGGATCAATATTGGAAGAGACAGGATTAATCTGCATTACTTTTGAAACATGAATAACATGAAAATGAAGGTAGACAGAACAGAAGGATGAAGATGAAAGAAGTACTCGAGGAGGAA-----------GGAAACAACGG-ATGAGTCACATTTATTACTCCTGCTCTGATTCCTGCCTAACCATGTGCCTATCCTCTGATCTGGTTGAGTGCATCACCATCTCAGACTCCCAGTTTTCTGTGCTGTAAACAT-AAACAGTGATGGTGTTCTTATTTCATTTGCTGTTGCATGTGTTTACTATTTGAACAAAAT-AATGAATTTAAAGCTGCTCAATTCAAAATG--CGTGGAAGCCAGATTTTACCTTGAAGCTTTTGGTTAGCATTACTACTGGTACCTATAGG-AGACCTAGAGGACTAAAGGGAACAGTGTGAAAAGAGGCTGAAATCAAAAcagttgacagcacccacatgacatctcacagctgtctgtctgtaactccagtttcagagaatatggcaccctca--tacagaaatgcat------gcaga---caaaaacac-caatgcacataaaataaataaatccttaaaa--taaaaa------------------------------------------AAGAAGCTCACTACT-------------AAGTGAGGATAAAACTTTTACCTGCCCCCTGGGTAATATGTAAAATGTATT----CTTCCAATCA-----GTTCTGCTGCCTGCTTGAGAGTTTCATGcagacattgttcttggtgttgggtatacagatagtaaataGGC----------------------------------------------------------------------------------------------------------ACCAAAGATCTAAC---------AGGAAAGG---------------AACACAGTAAAGAAATGGATA---------------CAAACTGCAG---------CATCAGGCAGAGAAAG------AGTCAGCAC-CAGTATTGAAAGAGGCAGGAAGGAAAAAAGTAAGAAAGAACAAAGAGTGG------ATACAGCACTTAGTCCT-GTGGTTGAAGGCCAAGTATGTGATGGAGTGCTTAGCACCATGCTATGCTCACAAGAGCATTCAACTC---------CTGTATGAGGAAGCCACAGAAGCT----------GTCCTCCATGGTGTTACTTGAATTATAAGA----ATT-------------AAATCTCCACATAGCAGACACATAAATATGAAGAGTCATTATTTTATGTGACAAGAATATATTGACTCTCATCTGATGTGTCGATTTGGTGATTTCAAGCAAATAAGGCCTAGTTCTTATTTCAGAGTGCTCAGGCTAAGGTAGGAGAAGATGAACAGGTCTCCTATAGGCCCACGTGTATCAGACACGAGGCTGGCCATGGA---------------TACTCACTCCCTGCTTTTCTGAGCCTACACATTCTATTCCACCCCCTCTTTTT---CCCTGTGGCCCAGCCTACCTTGACACTCATCTGTCTCACGCAGCAGATGTTCAAATCAGGTCATGAATTGCCACCAGCTGGGTGGAGA-----TACAGGAATGACATCTGATGGTGAGATACAGCTTACCATTTTCTGTCTAATGACATGATCCAGATCCCCCC-TCCTGCCAAGCACTGACTCTA----------------------------------CTCTGTCTT---CCCCTCTAAGTGATACTTCATAGTTACCAATCAAACCTCTTTGCCCTATTTCCAGTATTTAAGCAAGATATTCTATGTGATTTTTGAGGAAGATTC-AGAGAATTGAAATACAACATATCCaagtcc
s HiC_scaffold_1 138266394 2453 - 233722169 GACAGAATAGGAAATCTGCTAGGAAATCATCTCAGAATTCACTGGGCTGATTCTTGGAGTAGCTGAGCGAGAAGACACCAACTGAAAAAACTCGCTTCTGTGCACTTTGCAAAGGGTAATCCTGTGGTCTTCAGCAGAAGCAAACACAAAGTGCCTTTGAAAGAATGCACTCGTGTCCCAGGTTTTCACTGGTTTTCACAAGTACAATTTTAGGAAAAAGCCCCATTGTCCTCTTATTTAGTGAGATGCTACTTGTCTCTGGGTCAGATTACATAATGAGCTTTTTATAGGATGCCCTGAGCCCAGcctcttttccaaaataaattaatCATCTTTTCCCTATGCTCC-AGAATGTCATATATACTGTTTCTACCATTTCATGGTT--TTTTTGCCAGAAGAGC------AGGA------ACTCCTCAAAGACACAGACTATCCCTTTTTCATCTTGGTCTTTCCAGCATCCAGCACAATATACGATACTCAAAACATGTGTTCAAAGCATGTTTATTTCATGAATCAATGGACAT-------TTCATGAGGCTTGAGAACTGA-----AGAGTTCCAGGTGTGAGGAAGGCTGGCAACTTCTGAAATGT-AAGGCCAAATCCTCCTCTGCTGGGGTCTCCTGGCAT-------------------------ATGTCAGGCCATAAGCAATGGCCC-------------------------------------------ATTCACCAGGATGATAGA---------------------------------------GTCATGGTGTGGGAGGTC--TGTTATGAGA-ACAGAGCTC-TTTAAAGAGCTTTT--------------ATGAGAAGGACCAAGAGCAggacaaggaaaagaagaggaaacta----TGTAGCAGGCATCTTCAGTCATGAAAGCAAGGGCATGATTTCTGCATATAATTCTTTTTCTGGATCCTACCATACTAAGTAGTCATCATTTGAATCAATTCACTTCAaccc-------gtgcctcagtttccctctctgtTACCATTAAATGGTAATGAT-TTAATATTTCCTTTACTATGACATATGGCTGCTTCT----CAAAATCAGAGAATTCA----TGTTTAATTATAAAAGAACATGTAAACTAGATTT-GCCTTGTAgctttaaattatcattact--tggtACTTAAAAGCAGATATGGAGAA-TAGAAGAAGCACGG--AAGATGGATTgaagaccaaagaaa-gaaagaaaccccaTCAT---TTAGAG----------GAAGCTCAAATGTTGTGGAA----GCACACAGAATTCAAGAAAAGAATTCTAGGGCAGAGTTCAGAACCACACAGTAGTTAAGAACTAGATAATTGAGTCAGAGTTAAAAATGATCGCCCATTAATGCAACTTTAGGCAAGTTATTTCACCTTAGGAGACTCACCATCCTTAGCTATATTGAAATGAGGATAAAGATTATACCTATATTTTCAGTAATGAATAATATTCATTAATTCTTCCAATGATTATGATTTTACTGTTTGACTATATATGTGA--CAGGCATTGTTCTAGGCATGGGGGATACAAATTATAAATCAGCCAGATGATATTGCACAAGCCTGttatcttagcactctgggaggttgaggcagaagaattccaagtttgagtcatccctgggcaatttagtgagatcctgactcaaaactGAGGATGTAACTTAGTTTGAAGGCCAGGGGTTCATCCCTGACAACCACAACAAA-AAGTGAATAGGGCAAATAAGACTCCTGACTTTAGGTTATTTCCCTtccaacagaaaaaataaacaaatgaatacataacataaaattaagcAGTAAGAGGTCTAGGAAGAAAGATCAAGTATGGACTCAAAATAAAGCACTGATTCATAGTGGCTGGAGGTGGAACAT---ATGGAATTCTTGGCAAGGTA----GCT------AGTATTTAGCTCAACATTTTGCTGTCTGAGGAAGCCATGGATGCTAAGCCTCTGAGTATTCTCTGGTGTCCTCTGAATGATTAGACTGGATTCACATAGTGCAGGAAATTCTCATAGGGTAGACGCATAAATGGGAAGAGTTGTTGCTTTATTTGACATG-----------------------------TTGGGGGAAACCAAGCAAC-----ACCAGTTCCCACCACAGAGTGTCCAGGCTA--TTAGGTTAAGATGAACAGGTCCCCAGCAGGTCT--GTGGGCTGAACATGAGACTGACCGTGAGAATCTCTGAGAGTATTACTCACTGCATACTTTTCTG--------------------CCCCCTCTTTTTTCGCCTTGTGGCCCAGCCCACCCCAACATCCATCTGTCTCATACAGCAAATGTGCTAATTAGGTCATCAGCTTCCATCA-CTGGGTGGAGATGCTTTACAGGATGGATGTCTGGTTGTGACACTCTCCCTGTCAACTGCTGTCTCAGGAACTCATCTATATTCCTCCATTTTGCCCAGCACTGACGCCAAGAGAGGATCAGTTATCAGAGGAGGTAGCGGTGCCCCTTCCCTAAGCACCTGTAAGGGATGCAT-GTGGTTACCTGTCAAACCTCTAC-CTTTATT---AGTGTCTTGGGGAAAGCTTTTCTTTGAACCTTGGAAAGGATTCAAAAAAACTGAGGCATAGCAT-TTTAAATCC

a score=85174
s chr3            92867822 3367 + 160039680 CCTTTCTTACTGTCATGGCTGACCTGAACACTGTCTACCCACTCCAAGGGAGTCCTTGCCTACAGCAGAAGGCCTGTACCCTATGCTCTCAAGAGGAAAAGTCTAATAAATGAGAAACATGTAATGCACAAAGCCCACCAATA--TCAAACCACATTCAATGTAGTAG---TACCACCCTACTATGCTCCTGAGA---TTTGAGTTCAAAGGTCCT-CCAGGATCCAGAA-GAGAAACTCAAGGGTTACATAGCAATGACATCAAAGGCCATGTCTTCTTGAAGGTCTGTGGCAA---AATTCACA---CAGATTAATCAGAGGGAAAAAATGAAGGAGTCCTCAAACCCAAAGTCTACAGCC------TTACTCAAACTAAGCTGTTCATAGCATTCTAGACCATGTGTGAAGTCTGGGAGTTCATCAGCTTCACTTACTTGTGC-TGTCCATTTAGATCTTTAATCTAATAGCTGAAAACCAAGAGCAAGAAAAGGCACACCAGGGTGTATAATGAGAAGCAGAAACGTAGAGCAAATAAATTAACAGGA-GCCGCCGTGCCTTGCATTCAGAGCTTTATTCTTGCCACAGTTTGGGGGGTTGCGCTAACTCTGGCAGGATGCCTTGATAAAAGAGCAAAGT-------------------------------TAAGAACTAGGGAAGCAGTTGTCCGGTTTGGGTAAGAC-CAGAAGACATAGCAGGAGGGACATTTTGGAAGCATAACCGTTCTTTTGTGTCTAACAGCAGCAATCATCCTCATGATCACAGCATGCAGGACCTCTGGATCTCATGGGAATAATTCCCAAACAGCAACACCCA---GAGCCACAGCAGCTGTTgcagccgccgcaacccccgcagcccccgcagcccccgcagccTCCAGAACTGCAGCACCCAGAATCCTCACAGCAGCTAGAAGATCCTGTATTCCATCCTTGAGGCCGCTGGATCCAGCGTCTCAGAGGACTCACCCCAAAGCTCCGGGGAGCCAAACAGCAGTAGCTGGTGGAACAAGGGGCAGAGCACGGGTCAGGAACACAGCCCTGAGGTCCTGAGCCACTTGAAGAAGCCTGAGTATAGTAGGTCTGATAAGGAACCTGATACTGGACATAATATGTCTGAGCCTGGCAGGGAGCTGGACACTTGACAGAGGTCGTCTGACACGGAGCTGGGCACTTCACATTAGTTGTCTGGCATGGGGCGGGACATTTCACATAGGTCTTCTGGCATGGGGCTGGGCATTTCACACAGGTCGTCTGGCATGGTGCTGGGCACTTCACATAAGTAGTCTGGCATGGGGCTGGGCATTTCACGTAT------------------------------------GTCTGGCAGGGAGTTGGGCATTTCACGTAGGTTTTGGTCTGACACGGAACTTGGTATCTCACGTAAGTTTGAGCAGGAACTGGAGCTGAG--------------------------------------------------------------------------------------TATCTCAC-AACAGTTTGAGGCTGGTAGGGAGCAGGCCCTGGAGCACCAACAGCTTGGATCTGGCCTGAAACCTGGCCTTTCCCAAAGGCACCATCACTACCTTGCCCCACTCCCAGTCCGGAACCCTTCACGCAAGATGGAAGGAACTGTGGCTGCTTCTGTTGGTCACACATCTTGCTGTAGTTTTAAAAAATCTGAAAAGAAAACATTCATCAAAACTGTAAGATGAGAAAGGTTTCCACAAAATTCTGCAG--TGCATCCACTTGGGAGGGTGATCTGAAAAAGGTCTCCTTTTTGAGAAGGTCATTACCATCCAGGGGCTGTCTGTCTGATAGTAAGGTAGGTGtagagtcaaggattctaggttcatttcttacac-cttaactggctgtgtgacttcagacaag-----tcctcactcaaccCTGCTACTGTTTCTATA---------GTAGAGCTTGAAACA--GGAACTTACATTTCTACCAAACTCTCCAGGTCTCCTCTTT-------TTACTTCAGTATCTGCATTGGCGATCAGCCTTA-----TATTACTCTTCAACCAGTTGAGCCT-CCA-TCAATCCATCCCTTAGGGGTGGCAGTACTTCTTATTCCTTCCAACCCAGGAAGTCCTCAGGGAGGGCAGATGTATGT-------GCCTGAGGTAACTTGAGTCTTTAACTGAACCTAACA--GAGCAAAGCACAGGCTCACGCCTTAGTAAGTTTCTACCATTTGCCTGTTGTTTGAACACTTGAATATTGGTTCACTTTGTTAATAAGTAGAACCAAG---GAAAAAATGAA---ACAAATGTTCCCAGAGGAACCTGGTTCTCTTGAAGTCCCTGCACAGG--------------TAGTACTGCCCCCTCCCCTATCCAGCACGAGTTTCA--------GTTTCCCACTATCAAAGGCATTC--TCCTTCACAGATATCCCCTGGCTCATTATTTATCCCATAATACTCCACCCCAACTCTACCTCAAGTCTATTTCTTGCCAAACAACAA-------------GACTTACCTTCTTTCCTGGCAGGAGCAACACTGGGAGAAGCTAAGACTCTGAAGAGCTGGCATTTGGCGAGACTTTTTATAGGGTGGCAATGAAGCAATTTGATGCCATTTAAATGAAGCACCTGGGATCACGAGGACAAGAGCTGATATTGCATTGGTGAGATTCCTCCCCAGTATGCCTGACTGTTCACTCAGAGGCAGGGCATGTCTCTACTTGACACTGAATTTTCCTAAATATGAGATAAATTTTCCTAAATATGTTTCTTCTTCATGAAAC------AAGCCTCCTTCTCATCCTAGAAGCCACGTGTTAT-CTGGTGCAATCTGACCCTGATGTAGGGGCGTTTAGTTGAGACTCTCACTACTTCACACACTATGTTTAAAGCTGCTCTGTGTCCTTCAAACCGACATACTCATTCCTGCTGGGGATTTCTTGTGGTTTCTACTGGTTAGGGTTGTTGGAGAAAGACTTTGACATGGTGGTCTCTGGCTCAGTATAGTGGGGAGGTCATCACGAACTTGTTTA-TCCATGAACCATAGGGCTTTCCTAGG--TAATGTGGGAACTGAATAGATTCT--GTATGATCTCAGACCCCAGG----AATTAGGTCTTCAAATTGGCTCATCTCAGCTTCTCCTATCCCCATGGCCTTCCTTCAACTCATCTTCCTGAGTCTCATTTCCAGAAATAGATTC--CAGAACCTAGGATTGGGGGAATTCCAGACAAATG-----TTTGTGAGTGAAGATAATGATAAAATCTATAGCCTAGTTGAATATTT--TGAGGGGCCAAAAATGTATAAGGCAGATGCAT------GCAACAGAAGCCAGGCCTGAAGAATAATGAGGGTTCCAAAGCATCCAAAATGAGTAAGTAT------------------------TGCTACCA-------------------------GTCTTTCATGATTGAA-------TTGTCTTTGAATACAAGCCACATTTTATTTCCTCAATACAGTAAATGTGGAAAAAATTCAAGAATAATATCTCTTGATCAC--------TATTGAATACTGCTGTAGTCTATGTCTCT--GTTTAGTTTTCATCATAACTCTGTGA
s HiC_scaffold_1 138272695 3432 - 233722169 CTTTATTTACTGCCA-GGCTCACCTGAACCGTATCTACCCATTTCAAGGGAATTCTATCTT------------CTTTAGGCCAACGTTTTATGAGGCAAA-TTTATTAGATGAAAAA-ATGGAATCCGTAAAGTCCACTATGGGTTCAGGTCTCCTGAACAGCACCAGAGCTGTCATCAAATAGTGCTCCTGAGAAGATTTGGCTTTTACAATCTTACCAGCATCCAGAAAGATAAATTCAAGAGATT-------ATGCTAACCAA--CCATGCTGCCAGGAGGGCTTGTGGTAGCCTAATCTTCAACTTAAACTAATCAGGGAATAAAAATAAGGCAGTCCTCAATCCAAAAATCTCCATCTACTAATTTGCACAGGGAAATTTGTTTGAAACATTCTAGA---------AGGT----AAATTTACTAGCTTGGTCTACTTATTCATGTTCTTATAGATCTCTCTTctagaaaaagagtaa-aagagcAAGCCAAAAGAGACTAGGAT------TGGAAAGCATAAATATGGATCAAAGAAATAGACTGGAAGTCAC--TGCATTACACTGAGAACTTTATTCTTGCCAAAGTTTGGGAT-TTGCGTTAACTGTAGCAGGATGCCTTGATAAAGAAGCAAAGTATGGAAGTAAATTGATGAGGTTCTACATAGCTAGGAATGAGAGGAACAGGGCTGGAGGCTGGTGATGTCTCAAAGGATGTAGCCTCGTGATGAATTCTGGAGCAAGTCTGCCCTTCTGTATTTAACAGCAGCAATCATCCTCATGGTCACAGCATGCAGGACCTCGGGATCTCATAGGGATAATTCCCAAACAGCAGCACCCCCCTGAGCCACAGcatc--------------------------ctccagaa----ccacagcacCCAGAACTGCAGCATCCAGAATTCTCACAGCAGCCAGACGATCCCGTGTTGCAGTCTTGGGGCCGCTGGATCCAACGTCTCAGGGGACTAACCCCGAAGGTCCGGGGGGCAAGACAGCAATAGCTGGTGGAACAGGGAGCAGAGCATGGATCAGGAACacagccctgggaggctgaatTGCTTGCAGAAGCTTGAGTGTAGTAGGTCTGACCAGAAGAAGGGTACTGGACATAATATGTCTGGGTCTGGCAGGGAGCTGGATATTTGACATAAGTTGTCTG------------------------------------------------------------------GCATGGAGCTGGGTATTTCACATAAGTTGTCTGGCAGGGTACTGGGCACTTCACATACGTCATCTGGCATGGTGGTGGGCACTTCATATATGTCTTACAAGGAGCTGGGCATTTCACAAAGGTTTGGGTCTGGCAGGGAGCTGGGCCCTTCACATAGGTTTGAGTCTGGCATGGAACTTGGTATTTCACATAGgttggagctggagctggagctggagctggagctggagctggagctggagctggagctggagctagAGCTGGATAATTCGTGAAGGGTTGAGCCTGGCCAGAAACAGGGCCTGTCACACAAATAGTTTGAGCATGGCAGGGAGCAGGGCCCATCACACAGACAGTTTGGGTGTGCCTTGGAGTCTGGCTTTTCACAGAGGCACCACTGGCAGCTTGTGTAGCCCCCAGCCCTGAACCTCTCACACAGGAAGGAAAAAACTGTGGCTGTTTCTGCTGGTCACACATCTTGCTGTGGTTATgcaaaatctgaaaagaaaagcTTCATAAGCACCACAAAAGCAGGCAGGTTTCCAGGGAGACCTGCAGAATGCTCTCAGATAAAAGGAT-CTCTCAGCAGTGGGGCCTTTTAG-GAAGTTCATGGAGACTCAAGTTTTGTATG-CTAACACTGGAGTGGACTCAGAGCCAGAGATTCTAGGTTCATCTCTTGTATGTTTACCTGGCTGTGTGACTTTAGACAGGGTCACTGCTCACTT-GTCCGGCT-CAGTTTCcacaagagaaaatgaagagTTTAAAAAGACAGTGTTTACATTTCAACCCAACTCTCCATGTTTCTTCCCTTCTTAACTCATTTCAGTGTCTGGATTATGAATTATCCCCATAAACTATTACTCTCTAGCTTATTTTTCCTGCCACTAAATCCA---------AGAAGCTCTCCTTCTTCATCCTGCACAATCATGCAGTAACCCAGGAAGGCAGGTTTCTGTTAACTGATCCTGAACTAA--TGAGTTGCAAAATGAGCTGGACAAGGAGCAAAGC-CAAGGTCAAAGTTGAACAAATTTCTACCATT----TCTTCCCGGATCAACTAGATACCGATTCTCCTCATTAGTAAATGAACCCAAGACTGTACAAATGCAGGCATAGAGGGAGAATGAGGAACC-AGTGCTC-TAAAATCCCTTCCTAGACAGACCAACCAGCTCAGTAC--CCTCCTCGCCCCTTCATCTTGTGTCCCAGGCACTGGGCTCTCTGCTGACTGA-CCATCCCTTCCTTCATGGGTGTCCTCAG--TTATCCTTTATCTC--AGTTACCCACATCAACCTTACAC--AGACTGTGTCTTGCCAAGTCCCTATCCCAAGTATGGGGACTTACCTTCTTTTCTAGTAGGAATAAAACTGCAAGAGGCAAAGA-TCCAAGACACTGGCAGTTGGAGAGACTTTTTATAGGGCAGCAATGAGGCAATTTAATGGCATCTAAATGAAGCATCAAACATCATGAGGAGGAGGACTGCTGTTGCATTGGCAAAATTCCTCCCCAGTAGACCTGGCTCTTCAGTCAGAGGCAGGGCATGTCTCTGCTTGACAATGAAGTTCCT--AACTTGAGATAAGTGATTCCAGCT---TGTGTCCTACATAAAAAGATGTGAAGTCCATCTTCTTTTCCAGACATTATGAATAATACCTGTGC-ATCTGTCCCTAG--------------------------------TCAAAC----TGTTTCAAG--ACACTTGGTTCTTCAA--------------------------------------------GGTCAGA----------------TTTGCCCCAGTGGTCTCTGGCTCAATGTGGCATCAAGGCTTCCAAGGAATAGATTGTTCCATGAACCAACATGTTATTCTAAGATTATTTGGGAAACTGGTTGGGTGCTTGTTAAGACACCCATCTCTATGTCTACACTGTTTCCTCAGATT------TTTCATGTTCTCTGATCTCTACCACCT---------TCACCTTCATATCCCTCACTCCCGGGAATCAATTCCGCACAACCCAGGGTTGGAGGAATTCCAGAGAAATGAACACTgtgtga-taacagtaatagtatAGTCTAACATGAACTTGAATGTTTTCTGTGTACCAGGAAATTTATGAGGCAGATATATTTATAGGTTACAAGAG-TGGCCCAGAAAGATTGAGACTTTTTTTCGTCAACCAAAACAAGTGAGGACAGCAGAATTTAAGCGTAGCCAATGTGCTTTTACAGAGCTGATCTTTATCTATATGTTGTCTTTCATGTCTGAATGTAGGGTCGACCTTGAATCTTTGTCATCTTCCCTTTCTCCAAAGCAGTCAATATAGAAGAAGT--GGAAATAATATCTATTGAGCACTTGCTGTGTGGCAAGAATTTCTCTAGTCTTTTCCCCTACATTTAATCTCTGCAGTAATCTTATGA

a score=11824
s chr3            92868641 604 + 160039680 aacccccgcagcccccgcagcccccgcagccTCCAGAACTGCAGCACCCAGAATCCTCACAGCAGCTAGAAGATCCTGTATTCCATCCTTGAGGCCGCTGGATCCAGCGTCTCAGA---GGACTCACC----CCAAAGCTCCGGGGAGCCAAACAGCAGTAGCTGGTGGAACAAGGGGCAGAGCACGGGTCAGGAACACAGCCCTGAGGTCCTGAGCCACTTGAAGAAGCCTGAGTATAGTAGGTCTGATAAGGAACCTGATACTGGACATAATATGTCTGAGCCTGGCAGGGAGCTGGACACTTGACAGAGGTCG-TCTGACACGGAGCTGGGCACTTCACATTAGTTGTCTGGCATGGGGCGGGACATTTCACATAGGTCTTCTGGCATGGGGCTGGGCATTTCACACAGGTCGTCTGGCATGGTGCTGGGCACTTCACATAAGTAGTCTGGCATGGGGCTGGGCATTTCACGTATG---------------------------------TCTGGCAGGGAGTTGGGCATTTCACGTAGGTTTTGGTCTGACACGGAACTTGGTATCTCACGTAAGTTTGAGCAGGAACTGGAGCTGAGTATCTCACAACAGTTTGAGGCTGGTAGGGAGCAGGCCCTGGAGC
s HiC_scaffold_1 138273481 553 - 233722169 AACAGCAGCACCCCCCTGAGCCACAGcatcctccagaaccacagcacCCAGAA------CTGCAGC------ATCCAGAATTC--TCACAGCAGCCAGACGATCCCGTGTTGCAGTCTTGGGGCCGCTGGATCCAACGTCTCAGGGGACTAACC--------CCGAAGGTCCGGGGGGCA---------------AGACAGCAAT---------AGCTGGTGGAACAGG---GAGCAGAGCATG---GATCAGGAACacagccctgg-------------gaggctgaatTGCTTGCAGAAGCTTGAGTGTAGTAGGTCTGACCAGAAGAAGGGTACTGGACATAATATGTCTGG---------------------------GTCTGGCAGGGAGCTGGATATTTGACATAAGTTGTCTGGCATGGAGCTGGGTATTTCACATAAGTTGTCTGGCAGGGTACTGGGCACTTCACATACGTCATCTGGCATGGTGGTGGGCACTTCATATATGTCTTACAAGGAGCTGGGCATTTCACAAAGGTTTGGGTCTGGCAGGGAGCTGGGCCCTTCACATAGGTTTGAGTCTGGCATGGAACTTGGTATTTCACATAGgttggagctggagctggagctggagctggagc

a score=12577
s chr3            92868852 437 + 160039680 ACTTGAAGAAG---CCTGAGTATAGTA------GGTCTGATAAGGAACCTGATACTGGACATAATATGTCTGAGCCTGGCAGGGAGCTGGACACTTGACAGAGGTCGTCTGACACGGAGCTGGGCACTTCACATTAGTTGTCTGGCATGGGGCGGGACATTTCACATAGGTCTTCTGGCATGGGGCTGGGCATTTCACACAGGTC---GTCTGGCATGGTGCTGGGCACTTCACATAAGT---AGTCTGGCATGGGGCTGGGCATTTCACGTATGTCTG-GCAGG-----------------------------------------------------GAGTTGGGCATTTCACGTAGGTTTTGGTCTGACACGGAACTTGGTATCTCACGTA---AGTTTGAGCAGGAACTGGAGCTGAGTATCTCACA---ACAGTTTGAGGCTGGTAGGGAG-CAGGCCCT-----GGAGCACCA---ACAGCTTGGATCTGGCCTGAAACCTGG--CCTTTCCCAAAGG
s HiC_scaffold_1 138273737 512 - 233722169 ACCAGAAGAAGGGTACTGGACATAATATGTCTGGGTCTGGCAGGGAGCTGGATATTTGACATAAGTTGTCTG------GCATGGAGCTGGGTATTTCACATAAGTTGTCTGGCAGGGTACTGGGCACTTCACATACGTCATCTGGCATGGTGGTGGGCACTTCATATATGTCTT---ACAAGGAGCTGGGCATTTCACAAAGGTTTGGGTCTGGCAGGGAGCTGGGCCCTTCACATAGGTTTGAGTCTGGCATGGAACTTGGTATTTCACATAGgttggagctggagctggagctggagctggagctggagctggagctggagctggagctggagctagAGCTGGATAATTCGTGAAGGGTTGAGCCTGGCCAGAAACAGGGCCTGTCACACAAATAGTTTGAGCATGGCAGGGAGCAGGGCCCATCACACAGACAGTTTGGGTGTGCCTTGGAGTCTGGCTTTTCACAGAGGCACCACTGGCAGCTTG--TGTAGCCCCCAGCCCTGAACCTCTCACACAGG

a score=9072
s chr3            92868877 221 + 160039680 GTCTGATAAGGAACCTGATACTGGACATAATATGTCTGAGCCTGGCAGGGAGCTGGACACTTGACAGAGGTCGTCTGACACGGAGCTGGGCACTTCACATTAGTTGTCTGGCATGGGGCGGGACATTTCACATAGGTCT---TCTGGCATGGGGCTGGGCATTTCACACAGGTC---GTCTGGCATGGTGCTGGGCACTTCACATAAGT---AGTCTGGCATGGGGCTGG
s HiC_scaffold_1 138273804 221 - 233722169 GTCTGGCATGGAGCTGGGTATTTCACATAAGTTGTCTG------GCAGGGTACTGGGCACTTCACATACGTCATCTGGCATGGTGGTGGGCACTTCATAT---ATGTCTTACAAGGAGCTGGGCATTTCACAAAGGTTTGGGTCTGGCAGGGAGCTGGGCCCTTCACATAGGTTTGAGTCTGGCATGGAACTTGGTATTTCACATAGgttggagctggagctggagctgg

a score=8892
s chr3            92868989 210 + 160039680 ATGGGGCGGGACATTTCACATAGGTCTTCTGGCATGGGGCTGGGCATTTCACACAGGTCGTCTGGCATGGTGCTGGGCACTTCACATAAGT---------------------------------AGTCTGGCATGGGGCTGGGCATTTCACGTAT------GTCTGGCAGGGAGTTGGGCATTTCACGTAGGTTTTGGTCTGACACGGAACTTGGTATCTCACGTAAGTTTGAGCAGGAACTGGAGCTG
s HiC_scaffold_1 138273811 249 - 233722169 ATGGAGCTGGGTATTTCACATAAGTTGTCTGGCAGGGTACTGGGCACTTCACATACGTCATCTGGCATGGTGGTGGGCACTTCATATATGTCTTACAAGGAGCTGGGCATTTCACAAAGGTTTGGGTCTGGCAGGGAGCTGGGCCCTTCACATAGGTTTGAGTCTGGCATGGAACTTGGTATTTCACATAGgttggagctggagctggagctggagctggagctggagctggagctggagctggagctg

a score=9945
s chr3            92869048 241 + 160039680 GTCTGGCATGGTGCTGGGCACTTCACATAAGTAGTCTGGCATGGGGCTGGGCATTTCACGTA---TGTCTGGCAGGGAGTTGGGCATTTCACGTAGGTTTTGGTCTGACACGGAACTTGGTATCTCACGTAAGTTTGAGCAGGAACTGGAGCTGAGTATCTCACAACAGTTTGAGGCTGGTAGGGAGC-AGGCCCTGGAGCACCAACAGCTTGGATCTGGCCTGAAACCTGGCCTTTCCCAAAGG
s HiC_scaffold_1 138273771 232 - 233722169 GTCTGGCAGGGAGCTGGATATTTGACATAAGTTGTCTGGCATGGAGCTGGGTATTTCACATAAGTTGTCTGGCAGGGTACTGGGCACTTCACATACGTC---ATCTGGCATGGTGGTGGGCACTTCATATATGTCTTACAA------GGAGCTGGGCATTTCACAAAGGTTTGGGTCTGGCAGGGAGCTGGGCCCTTCA----CATAGGTTTGAGTCTGGCATGGAACTTGGTATTTCACATAGg

a score=26285
s chr3            92871124 2060 + 160039680 TCTTGATCACTATTGAATACTGCTGTAGTCTATGTCTCTGTTTAGTTTTCATCATAACTCTGTGATGGGGCTCTAGAGGAAGGAA---AGAC--ACGGGTCCAACTACCTCCCCGAGTCATTGTTATCagtggctaacagagtaccataagaacctagacctgtccagctccatagcccatgcctttcccactatgccTTGAGGGAAGTGTGTGGGATCATCTATGGGAGGCTATAAAGCTTGTATCTGGAATTGGT-----TTCAAATGCTTCTTCCTCAAATCAACCAGTCAAGGCTTCA-CAAGTCACTGCAACCTCCCAAGTGAAAGGTGTTTCTAAATTGGCTCCTAA--TAGATCCTCAGTTCCCCAGGATCCATAA-----------------CTCGTACCTAAAAATATCAACGTGCC--ACTAGGTCACTGATCTTGCCATACCCCATATCAGGTCTT-------------------ACAAAGTCTATCCTAGACATTTTAGA------------------------------------------------------------------------------------------------------------------------------------GGAAAGAAGAAGGGGACATTCTGCTCCAGGCTTGGAA-----------CGTGCTGGCTCTTCCTGTCATCCCTGCCCAGTAGGCTTGCCACATTGT------------GTATCATCCATGTGAAGCCCACTGTCTGTCAGGAGTAAAGGAGT--TAAAGGG--GCTATTGGTCCAGGCC---------------TCCATAGT------CCTCAGTTGTTTCCCAGGCCTAATGTTTCATTGA---ATGGAGAAGGAAACAATCGCTTGGTGGAGAGAGGGATGTCAAACTCTTCACATCAATAACTTGTTAA-TTTAATCTTTGTGATAATAGCTAAAATAAAACAGGACATAGATAGACAA-CTGTGAAAAATCACTTAGCTACAACTAGTGAAGCCATAATTTAAAACCAAGAATGAATTATTCAGAGCCT--ATTATTTCCCCACAACAAACTGCTTCTGGTTGGCATGTTGTTTCAGTTTCAGTTGTACAGCCCTCCATATTGTATGTAGCATGGGG---TAGGTAGCTCTATTCACAGCAATGACAATGACTTAGAAGGCCATTGGTTTCAAAACATGCCCACAGAACAGGACAGACACTTTTCAGGGTATCATTGAAAAGAACTGACCCCCTTGTCATACAATTCCTCAGCCCCTCTGCTATTTCAATATTTGATTATAAGGGTCTGTTTTACACACAAAATGTTTGCTTTCATAGACTACCTGCCCACGGAGTTATATGCAGTAGTTTATTATTCTCTGGAGTTGAAAAGTATGGGTTGATTACCATATTTCATCTTAGGACCTGGGAAACATTAACAGTTAATGAAATGAATTGGTGAATGAGTGGGAATTTGTTACATTGAGGTCGCAGAATAATTTCCCTCCTCTTGGGGTTAAAGTGATACTGCTCTGCCGTTAGTCAATCTGTGTGTCTCATGCCAGCTCTGAGCTCTGATTGGCCCACTTCCTGCTCTGTAGGGTGAGGTTCTCACTAATGGTTTTGACATCTTCAGGTAACACCAACATCACTGGTGAGAGATACTGCATCCATGTGCCATGCGGACAGGTGGGTGGGCTGTGCTCCACCCACTTTTATAGGCTTGAAGGCAGAG--CTGCTGGTGTCAGAAGATAAGTGCCAGTGTCAAGATGAGTCATGAGGATATTCCAAGAAGTTTCCAGAGCCTCT-GCCCATTTATCCCTTTGGCAGC----TCATGGA-TCATAGACTTGTTGGTTTATGCAATTACAGTCCAGTGGACTCACGTGAGAGTAAGAAGAGAGAATCATCTCTGAGATTGAAGGGCCTAAAACAGGTCATTGGGTCTGGCCTCTGGTCTTGTTCTATA-----------------TAGAAAGTCTCAGTGGGTTTTAAAAGCT---CTTAGAATCTCTTGGTTAGCATGCCTCACAATTTTCCAGCTGAACAGTCAGGAACTACATATCAGATTATCAATTCATCTCCTTGTAACACCAGCATTCATGAATACTTAACAGCCAGACAGTAATCTTGATACTGGAGGTTGACAGCATGAGGAATAGACCTTTTTTTTTTTTTCCATTTTTATCAATTGTATCCCTGGAAG-----GGACTGTCACGCCAACCTCTAGCTGTAGCACCCCTTGACCTTCACCCTTTTCCACC-------------CTGGAAACAGCAGGAGTGGAA
s HiC_scaffold_1 138277655 2086 - 233722169 TTTTcatcactgttgctt-----tgtaatatagttttaaGTTAAGTATTTATATTGGCTCCAATTt-----tacagaagaagaaactgagacCAAGAGACCTACCTATTTCATGATGTCACTCTTTCTGATAGGTAACAGAACATCATT----TATTAACCCGTCCAGTTTCAGAACTTATACTATTCTCACTGAGCCTTG--------GTGGGGTATCCATTATAGGAGCTTTTA----TTGAGCCTAAGGTTAGTAATTGTTCTAAAGTCACACCCTGAAATCACTTAGTCAAGACCCCAACAGGCCTCTCTGGTCTCTTAGGTAAAAGAGGTCCCtaacttattttctaaaataaattttgaatttcttaGGACCCATAAGCTTTCAAACATTCAATTTCCTAAGCAAAGAAAATGGAATGCCTCACTAGCTTGCACATCCTCCTCTATCCCAAGTcagtctttttattcttttctttttgagacagggtct-tgctatgcagttcaggctggccttgggcttactttgtagctaaGGCTGATATCAAAcatgcaataatcctcctgcctcagtctcccaagtggtaGGAGTACAGGCCTGGAACCCAAGCCAAGTCTTAAGTTCTGCCGATGAACAATCTGGAGAAAACAAAGGTATGTTCTTCCCCAGTTTGGAAATAGTCTTGCTTCGTCCTGACACTTCC---CTTCTCCACTTAATGGATTTCATGCACTCTACAGTTTGCTCTGTATTGTCTAC---AAGTCCTTCACCCA-----AATAGATGGATACTAAAGGAAAGATATTGGCCCAAGCCACACCACGCTTGCTATCCAAAGTGTCCTATCTCAGCTGTTACCTAGGTGTGGTGCATTATGGAGATAAGGGGAAAGGAACAATTTCCTATTACAG---------TCAGACACATCACAT----AGTTCATCAAAGTTAGTTTTTGAAATAATGTCCCAAATAAAATGAATAGCAAGCGAACAATCTTCTTGAGCTCACATAGTTAAAAC-AATAGAGCTAGAATTTGAACCAATGTATAAGAGATTGCAAATTTGGATTGTTTTACCACCACAA-----------------------------------------------TATATTGCTTCTGGCATTAAGATCTGTGATGCTTTAGACACAACAAT------------------TTTTGGT-------CATCC-----------AACAGACA-----------GTCATTAAA-------------------------------------------------------GATTACAGAGGACTGTTCTGTAAAGACACTATATATATCCATAACCTAGCTGTTTGTGCAGTCATTCAAACTGAGTTATAGTTTTCATGTGATAGTAACTCTGGACAGTTAACTGTATATCTTCACAGGACCTGGGAAACACTAAC---TAATGAA-TAAACGTGTGTGCAGATAAGGATCTGC----------------AGCAACCTCTGTCTTTGTGTGGTGAGTATCAT-CAATCTTGCTGTTAGCCA---------TCTTGTGCCATCTGTGAGTTCTGATTGGCTCACTTCCTGCCTTCT-GGGTCAAGTTATCATTAATGATTTTGACAGCC------AGCAGCAACAACTCTGGTTAGAGATACTGACTCCATGTGCCTCCCAAATGGGTGGGTGAGTTGTGACCTACCCA-TTTCATAGGCCAGGGAGCCAAGGCATGGAGAAATCAGGTGATTGGTGTCAGTGCTGAAATGAGTCATAGGGTTATCCCCAAAAGTTTCCAGAACCTCCCTCCCATTTATATCCTGAGACGCAAGGTCATAAAATCACAGACTTATGGCCTCATGCAATGACAGTCCTCTAGACTCACAGGATAATTGGTAGACAGACTCATCTCTGAGGTGGAGGGGACTAACACAGGTCGTAGAGGCTGTCCTCTACCTTTGTTGTTTAGTATAATGGGCTCTCCTTAGGAAAATTTACTGATCTTTAAGTATTTTCTTCAGTACCTC-TGGTTGCCTTGTTTCAGAATTCACTATCTCAATAGTCAAGAACTATCTACTACATTGT-AACTCAGGTCCTT-TAACATCATCACTCATAGATCCTCCTATGCCTGTGGTAAATACTGAAACTAGA-------------ACAAGTGAAC------TTTCCTTTCTACTTTGATGCATCACATATGCAAAAGATTGTAACCTGTTACATTAAACTCTGGTCACAGATGCCACTGACTTCCACCCTTCTCCATCACAGAAAATTGTTCTAGAAGCTGCAGAGGTTGAA

a score=22085
s chr3            92894203 1440 + 160039680 GACACTCATCAGCAACAAGGTGCTTATACATTGCCAGGCCCCAAGGCGGAGCTAAGAGAAACCAA---AGAACCTTGTTCTTACCCATCTGGGGAAAGTGCCAGCTCCAAGTCAGGCTCTGGGCCAATGTCCTCTACGAGTGCTGTGTTTCTTTCTTTGCTTGTATGTTAAGAGGTTAACTTCACTACAGCTCCACAAAGAGCACACCCATTTTTCAGACTTCTTCAAACACTGCCCTTCTCACC--TTCCTTCTTGGAAGACTCAGCTGTGgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgttttgtttCCAGTGCTCAGAACCCACCTGGGCTGTCCCAACCCTTCAAGTAGTTGAGAGACTGGAATAGGAACATCAGGT---------------TTGGAGTGGATGAAGAGCACACCCAGAGG--ATCTTGTGTAAGGGAATCAGGATTAGTCCTGGGCGAGCCAGAGTCCTGGTAGGG--GAGGTATAGCACTGCATAGCCACATCAGGCATTGAGCCAGGTCTGATACTTATCTGCCACCATGTTCTGTCTCCAGTAGACACAGTCAGTCTTTCATG-------TCTGAAAACCATGGAGCCTCCCAACTGCCATATGCTGG----------------GATCAATGTAGCCCTAAGATG-------ATGAGCTGA------------------------TTGCTCAGG------TACCCCTA-----AGTATCACATTAATGTAACTACTGGCACTTCTGAACT--ACCACCTGAAGACATAAAGAAGATGGATAATATGTCAGT-------------------------------------------------------------CGGTACTCA--TAACTGGAAATTATTAGCAACAGTGGGCATGTACTGTCAAAATGAAAAATTCCAGCCACAGAGTTGAGAACTTTCATTCCATGAAAACAGCAATCCAATGAACACTGAACTCAGGACCTTACATGCTCTGAAAAGCATCCTCTGTAGGTCTACTCCCTGCCGGCTTCTCTCCTTCCTCTCGCTCTGCTTACACACTTCACCCTGTTTCTCTGAGTGCTGCTAATTTCCCCCTGAGGAGATGACAAGGAATGTCCCTTGTGTTGGTCACTGATGGGGA--------AGAGCCGGTCTCAGCCG-----------TTTCTGAGAAACTCCTTCTCATGGCCCAGTCACGTGTCAGCCTCCAGGGAGTGCCACAGCACAACCACACACCTACCTGAGTCATCTCTTTCTCATAGCCATTTGAGAAGCCCAGCCTGGATTTCTGGACCTGCCCT--CCCCTTGGGTTGAGCACAGAGCACTTGCCCTTTGTTGTTAGTGC----TGAGGGTAGCATAGGTG-----AGTATA-GAATTTTTGTGTTGCAAGGCAACCTTGGAAT--TGTCAAGTCCACAGCTACACAAGTTATAGATACATTACTAGCTACTCAGGGAATCCACTAATCCTT-----AAAACAAACGAGCCTGCAAAAATagagaatataaggccag------gagtcagactgcctggatttgattctctaccatgcagtagctgtgt
s HiC_scaffold_1 138309452 1511 - 233722169 GACACTAGTCA---ATCAGTCACCTTTAGGTAGCCATCCCCCAAGACAAAACTGGCACAGACTCAGCTATAGCTTT--TCTTATTCAT-----AAAAGTGTCAGTTGTGAGTCAGGCCCTGGATAAATGTCATCTATGAACACTGTATTCCTTC----ACTCTTGTTTTGAGAAGTTAAGTTTATTTCAGCTCCACATAAAGCAAATCTGCTTTGTACATTTCTTCAAATATCGCCA-TCTCACCTATGTGTCCTCTGAAGACTCACCCACTCTCCT-------------------------------------------------------------TCTACCCTACTTAGAGCCCATTTGGATTCCCCAAGATGCTCAACCTAGTTATAGAGCTGAATGCAGACAAGTGGTCAAATATTAGTGGAGTCAGAGCTGATGAAAAACATGTCCTGGGGATATCTTTTGTAAGCG--CCAAGTCTGATCTGTTGGCATTCAGGGTCCTGGGAAGGATGAATGGCAGCATGATACAACCAGAACACATACTAGGTCATTCTTGATATTAACCTACCTCTTTGTCCTGTCTCTACTAGATCCAGATGGTCCTTCACTCTTCTACCCTGAAGATCACAGGATTTCCTGGCTACCCTCTAGTGGTGGCAGGATCCTGACTGGTCATT----TCTTAAGATAGAGGTTCATGAACTAACTCCTGGGGCCAAGATCTGTTTGTTTGCTTAGGCTGCCATGACCCTGTCTCTAGTATCACA-CAGGATAGCTAATGACAGCTCTGATATGGATCATCTGGGGACATGAAGCAAATGGATGTTGTGCAGGTAGAGAAATATTGAATCATGAATGTATGGAGTCATTTCTTTGAGTGAATTATTGTTACATTATGGTATATAATTACCTTAAGACAATTGGCAATTGTGTATGTATGCTGACTAAATGATAAAATTCAGTCATGATATTGAAAAAGTCCCTCCtctaaa---------------aaaattgaatttaggTCC-TGTAGCTTCCACAATGCATTCCCTACAGGCTCATCTTCT------CTATGTCTTTCTTTCAACTCTACTCATCCATTTCAATCTGATTCTCTGTAAAGTGTTGCTTTCTCTCTGAGACACTGATCAAAGATTTTCCTTGTATCAGTGACAGATGGAGGGTAGGAGCAAAGCCATTTGTAACCACGCAATGTTCCCTTCTGTGATTTTCTCATCAATAAAGCTGTCTCATGTCTGCCTCCAGTGAGGACCACAG---AACTCCAAACCTGCC---ATAATTGCtttct--------------gagcccagcctgaatgCCAGG-CTTACCCTTCCCCCTCAGATTCATCACAGAGTACTTGGTCTTTGCTGTTGTTGTGCCATGGAGATAACATAATTGGagaaaatgtatgcatttttatgTTGCAAGACACCACTGGGATTCTGTCAAGTATATAGCTAGTGAAACCATAGCTTTGCTTCCAGATACTCATGG-ATCCAGAAAACTTTCCTAGAAAgtaagaaaggaacagaaaatagaGGTGAGGAGCCCAGAACATAGAACCAGTATGCTTGAGTGTGATTCTCTACAATTTGGTAGATCTGT

a score=12318
s chr3            92912972 687 + 160039680 AATTTTCTAAAAAGACTCCTCTGCTCTGTTTCATTCAC---------ACACCCTAACTTTTAGATGAGCGGGTCAGTGGCATGATCTTGACTAACC-ATATTCTTCATCTCACATGGGCAGTGAGTCACCAAGTCTTGAATATGCTTCCTTCTGGGTCTTGACTAAGC---------TGTCTGCACCACTACTAACAACTGGTCTCTCTTCCTTTTGCCTTCTTTTAGATAGGTT---AAAGGAGAGAATGGATATATA-CTCATAAGTGGGATAAATACCCTGATACTTGGACCC------TCTCCAACCTAGTGACTGGCTCCTTGGAGTGCTCAGGCTGCCCAGAGGTATCCAGACTAAGAAAAGGATGGGTCTTA-GTAGCTTCATCTTGTCTACAGATGAAACAGACAGGGGACACTTGAGAGTTCTCCATGGAGCCACTCTCAGTGCGATGAACATCAATGGATAC-CTGAGCAGC-ATCTCCTGCCCTG-TTTTGTACTAGCTTCCACCTTTTTCCTCAAGAGCCACAACAGAACTCATAGGCCCGTC----------CCAATAAAGACATCTTGTGCACAAGCCTCCTGTG-----CTATGAAACCACAGGCGAAGGCCT---TACTGAAACCCAGGAAATTTCTCTG--TCATAACTCAAAAGTCT-----------TGGGAATGAAAGAACAAGGGAAATGGAAAAGTGATGTAGCCCACCAAGAAGTCCAGACATGGGAG
s HiC_scaffold_1 138532234 747 - 233722169 AATTCTGTAAAGTGAGCCCCTTTCATGCTCTCATTCATGATAATTCTATTCCATGGTGATTAGGATAGATGATGAATAGTATAATCATGACTAATTTGAATTCTCCATCTTACACAGGCATTGAGTCACTAAGTCTTCAATTTCCTTCTTACAAAGTCTCGCCTAATCCTTTCCTATTCTTAGTCCCACGTCCAGCAGTAGAACta-cttccttctgtcttttgtcaaatagcttttaaaaagagGGTGTAACTAGATGTTTCTTGTGAAGAAAAGGCACACTGCAACCTGGAGCCTCAAAGTCTCTCACACAATGACCAGTTCCGTGGGAATCTCAGGCTTCCAAATGGGGACCATCCAAAGGAAATGGTGTGCTTCCTGGAGTTTCATCTCATTCATAG--GCCACTGAAGGAGGTCACATAGGGGTTCCCCATTAGGCCTCCCTGAGTAGGATGAGCAAAGCAAAATACAACGATTGGCTCTCACCTATACTGCTTCTGTAAAAGGATCCACCTTGTCCTCTAAGGGCTATGGTGTACCTAaaaggccagccttgagctcttCTAAGAAAGGTTGCTTTATCACAAGCATGCCATGTCCACCTCTGCCTCCACAGG-AAAAACTTCAGtgctaaaaaaaaagaagcttcttTGTTTCAAGATTCACAAGTCTTAGAGATAAggtgaaaatgaagaaacaaagaaaaaggcaagaaGACAGAGTATAAAGAGAAGTTCACACAGAGAAG

a score=5152
s chr3            92920826 336 + 160039680 attttattttattatttcattttgtGCAGGCTCACTGA-CTCCTTCTGTAAAGTCCTGCTA-CTTCTCCAGCAAC-TGTGCAGCCTCGCTCAAGTGTTCC----------------TTGACCAAGTATCCCCCAAATAACCCAGCACAGTG------------TCTGCCTATGGCCTCCTTCTGATATGCTGCAAGCTCTGTGGGCTGTAGTGACCCTAGCTCTGAA---GGTAGCTGCTGCTTAGGCCATCACAG-------TTGCTACAGTGCCATGGACATCACCATGAGAGTTGTGACTCCTGTGATAGCATCACTGTCTACATCTGGGGATTCTGCCTGTGGGCACAAATCAGTGGGCTGCTGCTGTCTTGG
s HiC_scaffold_1 138575232 363 - 233722169 atttcattattttagtttagtttaggtAGACTCACTAAACTCCAAC----ATGTCCTACCAGCAAAACCAGTAGCACTTCCAGGCCTTCCTAAGTGTCCCAAGTGCATCTAAAGTATCCACAAAGTGTGCTCCAAAGTGCCCACCCCAGTGCCCAGCATCATGTCCTCCTCAGATCTCTTTCTTCTGTGGCTCCAGTTCTGAGATCTGCTGTGGCTCCAGTTCTGAGGGTGGTGGCTGCTGCCCAAGCCACCACAGGCCCAGTCTCTTCCAACACCACTGCAAGCACC---AGGCTCCTGACTGCTGT--CAGTGTGA--GCCTA---GTAGAGGCTGTGGCTGCTGTCATGGCTCTGGGGGCTGCTGCTGAGCTGG

a score=5531
s chr3            92920907 255 + 160039680 CTCGCTCAAGTGTTCCTTGACCAAGTATCCCCCAAATAACCCAGCACAGTGTCTGCCTATGGCCTCCTTCTGATATGCTGCAAGCTCTGTGGGCTGTAGTGACCCTAGCTCTGAA---GGTAGCTGCTGCTTAGGCCATCA------CAGTTGCTACAGTGCCATGGACATCACCATGAGAGTTGTGACTCCTGTGATAGCATCACTGTCTACATC---TGGGGATTCTGCCTGTGGGCACAAATCAGTGGGCTGCTGCTGTCTTGG
s HiC_scaffold_1 138572667 252 - 233722169 CCCACCAAAGTGCCCTC---CAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCAT--CACCGACACAGGCACCAGGCTCCTGACTGTTGTGA----------GTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGG

a score=32884
s chr3            92923749 2106 + 160039680 AAACTATTACAGTCCC---------ATATTT-TGAGTGAGGAGAATAGATGGAAACAGAGGCAAGATGTTTCATTTGGCT-----------ATTAAGTCTTCAGAGCTGTGATTCAACCTGCTCAACTCACCTCCCCCAGGTA----TGTGCTGCTGGAACTTAACTGATGAGGCTTAGAT--TATCCACCCTGAAATGCCCATGGTTCTCTGAGCTCAAGGTTAACTAGCACAGATTCACCAGTGTTTACAATTCTGGGTATGCAGTTTATCTAAATGTGAAACTGGATGTTCTCATAAAGTGCTCGTCCATTCTCTCCCTT-TCATCTGTGATGCAACTTAATTCAGACTCTGTAGAGTTATTCCCAAGA---------GCATCATGAAGATCATAAAGCCTATCCTACAGATCCTTCTTCCTACTCAAAAGGAA-TCCCATGTCCATGGTTATTTTCTCAGAGCACTCTGTCCTAGTCAGTTGAAGGATTTGAGATATGGACCAGAGGTAGCATGGACTCACATTCAAACTTCCTCTTGATATGTTTCTTTCTC-TTTAATAAGAAGGTATGTATCCAAGAATATTAATGCAGAGCAGGTGCCCAGT----TGACTTTGAGAGTAAATGAAAAAGCAAAGGTATTTGAGATATTTTATTCCATTAAATTCCCATCATTTTACACAGATTTTTGTTCTTAGTCTAGATTCTCCATGCTCAG-------CCTCCAAATACATTCAACTTAAGCTGTGACTATTGGCAAGGTAGGACATCATTCTGAAGTTAGTTTAAGAACGAT-AGGGCATA-----------------TGTTCTTCTGTA---ATATTGAGAAACCCAAACCATCAAGA-TGAAGCCACACACACAGCTGACATGGAAAATGACCACCATAGTTCACAGTAGAAATAAGCCCTGCTCCACTCCAAAGTCAAAGTTGGTGACCCCAAAAG-GGATTTCCCTTTGCAAGTCCCACACCATTTTACCTCTTCATTTTGTAAGAGAATTCAAAGCCTACAATCTGCAGCCACTGAGATACTTTCCATATCCTCTTTTTCTCAGTGTTTTTCAACACACACAATTCTTCATTTGCTTTCAGAAAAAAAATCCCTCAACTCCAATTTCTTCAGTTTACTCACTTTCCAATTGCTCAGTTCACCCTCTGGGGTCTATTATGTGTGGCTTGGCTTAATCTCCTCCCTATAGACCTTTCTACACA---------TCTGCATCCTTT--------------------------------CTTCCATCATACACAGAGACTAGGAGTTTTGG-TATCAAATAGCACTAACCCTCAAATACACAAGAAAACTCAGCC-CTTTTCCAAGAGGCTCTTCAAAAACCTCATAACGTTTCTGCCCCCTTTCATGCACAATTCTATCCTGGAAGTTCCCACAGAAGTCCTTTGTAAGAAGAAGAATCTAAGGCGTTATTTCTTCATTCCCAAGCTAAAATAATCTCAAGTTTTGGGTACCTTGGGCCTTCAAAAGCTGAGAAAGGGAaaaaaaacaaaaaacaaaacaaacaaacaaacaaaaacaaacCCAAAACACTGAGCATCCCTATG-TGGAATACGTCAAGGAACAAGTAATACACTGGTGATATTGAGAAAGAATTTTATTCATCTACATGGTTGGACACAGGTG----------ATGGAACCATGAGAAG---------------------GAGAAGCAACCAGGCTTTTG---GGAAATCCATTAGAAGAGCTCAAGAACACAGAGCCCAAGACAGATTCTGATATCTGAAGAAAGAACAAGCCAACATGG-CACT----ACTGCTCAGTACTCCAAACCCTTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGGAACTGG--ACCTAGA-AGAGTAGGATAGAAACATTATAGGGAGAAGCTTCTGGTGAGT
s HiC_scaffold_1 138611895 2113 - 233722169 aAACTCTTACTATTCCTAGTCAAGTACATTTCTGGGTGAGGAGACTA-----AAGCAGAATTTAGGCCTTTTGCTGAGCTTTAACCCATGCATCAAGCAATCTGCATTCTGAT------------AATGCCACCCCCCAGGTGCTGGTGTGTAACTATAGTTCCACTGATGAGTCATATCTGCTGTCCACAGTGAACACACAAAGTTCCTGTGAATGTGAAATGAACCATAACTAATTCATTAGTGTTTATGGATTAGAATGTGTGCCACAGATGAATGTGAGGCTGTGTGTTCTCAAAAGGGTTTtgtccattttctcatttctcttacttttttctctcttattcaCACAC-----AGTGCTCCCCAAAAAGTACTCAAGTGTCTGAGAGA--AAGAACCCTGTCTCACTGATCCCAAAGCATGCTCACATCTAAGTCGAACATTTGTGTGCACTTCCTCAGAGAATTTCATT-TAGCAAgttaactgattttatttgcaAAGCAGATTTGACTTCAACTCA--TTGAAGATTCCTTTTGACATATGTTCTcctaatttattgaaaaattatgtGTCCAAGAATATTATAGCAAAATGATTTTACAGTATGGTACctttga-agaaaattaaataac--------------tatTTGATTCTTCTGAATTCAAA-AGTATTATACA-AGTTAGATTCTCTGTCATGATT-TCCATTCTGAAACTGATTTCTCATAAGGATTTCAACTTTGCCTGCATCCA-----GAGTCTCATCATCTTGCTGAAATTATCTCCAGCACCATCATGGCCTGGTTTAGTATCATGGCTTTTTTCTTCCACATCAGTATTTCAAAACTCTAGTGAACAGCACTGGAG----------GTTTTCCATAGAGAATGACTGTTTGGGTTTGAAGTAGAGGAAAACATTGCGCCACTCCAAAGTTGGGTTAGAAGCTCTCAGAGGAGGATGT---TTGGGTAACTATAGAATAATATGCTTGTTAATCTCTTGAAAGAAATATGAGTATG-AATATGTAATGCTTgatacatttatcat----tttattcctCCAGTTTTCTTGATGTCTCCAGATTCTCACTGGCATTTTTCAAGATAAATTGTCAATTGTAATGTATTCAGT--ACTTACTGTCCAATT---CAATTCACTCTCCAGAGTCCACTGTTTCCTATTCAAATCTATCTTCCTCTTTTAGACTTTTCTTTCCACTGCCACCTTCTCCAACCTTTTGGATTGACTCTTCCCATTTGTCTGATGCTCCCTACTCTCCTCAGCAGAGACTTGGGATTCTAGATTTCAACTATTTCCAATCCATAT-TACAAAGTGAAGGTAAGTTGTTTTTCTAAGAGTCTTTTCAACAAGCACACAATGCTTAGTCTTCTTCTTAC-----CTTGTGTCCT--AAGTACTC-CGGGGGCCTTTTACATGATGGGTACTCCAAAGTTGTAATATTTCATTCCCAAGGCAGGACTATTCCTAGTACTGGGAATGCTAGACCtacaaaaactgggaaa--------------------------------------aatggAACCTG-----CTGTTCAGTCTTGGGCTCAAATGAGTCACGGGAGAAGA--------GGTAGCtttga-aaacagttttatttGTCAGCAAGGTGAGACAAAGGTGTTATCATTGCCTGGAAAAGTGAGAAGATTTAGAAAACACAGGGTAAAGGGAAGAAAGAATGCTCTTCCCCATGAATGCATAAGCTG--CTCAGTATTATA------AGGAGAGCCTCAGACCCCTGGGAGAGGATT--GCCAGCTTGGTCATTGCAGACTTTTCTTTGCTCAGAAATCTCTCATCTGAACATCAG-ATCTAGATCAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACCGCAG-CCCcagagcagggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGGAG------------GGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAGTGCGGTCAGGGAACCTGGAGAGAGCAAG---GAAAAATCTCAGAGAGAAACTTACAGCCAGT

a score=29775
s chr3            92923834 2588 + 160039680 CTGTGATTCAACCTGCTCAACTCACCTCCCCCAGGTA----TGTGCTGCTGGAACTTAACTGATGAGGCTTAGAT--TATCCACCCTGAAATGCCCATGGTTCTCTGAGCTCAAGGTTAACTAGCACAGATTCACCAGTGTTTACAATTCTGGGTATGCAGTTTATCTAAATGTGAAACTGGATGTTCTCATAAAGTGCTCGTCCATTCTCTCCCTTTCATCTGTGATGCAACTTAATTCAGACTCTGT-AGAGTTATTCCCAAGA---------GCATCATGAAGATCATAAAGCCTATCCTACAGATCCTTCTTCCTACTCAAAAGGAA-TCCCATGTCCATGGTTATTTTCTCAGAGCACTCTGTCCTAGTCAGTTGAAGGATTTGAGATATGGACCAGAGGTAGCATGGACTCACATTCAAACTTCCTCTTGATATGT-TTCTTTCTCTTTAATAAGAAGGTATGTATCCAAGAATATTAATGCAGAGCAGGTGCCCAGT-TGA--CTTTGAGAGTAAATGAAAAAGCAAAGGTATTTGAGATATTTTATTCCATTAAATTCCCATCATTTTACACAGATTTTTGTTCTTAGTCTAGATTCTCCATGCTCAGCCT------CCAAATACATT-CAACTTAAGCTGTGACTATTGGCAAGGTAGGACATCATTCTGAAGTTAGTTTAAG-------------------AACGATAGGGCATATGTTCTTCTGTAATA---TTGAGAAACCCAAACCATCAAGATGAAGCCACACACACA-GCTGACATGGAAAATGACCACCATAGTTCACAGTAGAAATAAGCCCTGCTCCACTCCAAAGTCAAAGTTGGTGACCCCAAAAG-GGATTTCCCTTTGCAAGTCCCACACCATTTTACCTCTTCATTTTGTAAGAGAATTCAA--AGCCTACAATCTGCAGCCACTGAGATACTTTCCATATCCTCTTTTTCTCAGTGTTTTTCAACACACACAATTCTTCAT----TTGCTTTCAGAAAAAAAATCCCTCAACTCCAATTTCTTCAGTTTACTCACTTTCCAATTGCTCAGTTCACCC----TCTGGGGTCTATTATGTGTGGCTTGGCTTAATCTCCTCCCTATAGACCTTTCTACACATCT--------------------GCATCCTTTCTTCC-------------------ATCATACACAG---AGACTAGGAGTTTTGGTATCAAATAGCACTAACCCTCAAATACACAAGAAAACTCAGCC-CTTTTCCAAGAGGCTCTTCAAAAACCTCATAACGTTTCTGCCCCCTTTCATGCACAATTCTATCCTGGAAGTTCCCACAGAAGTCCTTTGTAAGAAGAAGAATCTAAGGCGTTATTTCTTCATTCCCAAGCTAAAATAATCTCAAGTTTTGGGTACCTTGGGCCTTCAAAAGCTGAGAAAGGGAaaaaaaacaaaaaacaaaacaaacaaacaaacaaaaacaaacCCAAAACACTGAGCATCCCTATGTGGAATACGTCAAGGAACAAGTAATACACTGGTGATATTGAGAAAGAATTTTATTCATCTACATGGTTGGACACAGGTGATGGAACCATGAGAAGGAGAAGCAACCA----GGCTTTTGGGAAATCCATTAGAAGAG----CTCAAGAACACAGAGCCC---------------------------------AAGACAGATTCTGATATCTGAAGAAAGAACAAGCCAACATGGCACTACTGCTCAGT-ACTCCAAACCCTTTTGTCTCAAACTCAGGA-----TGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCCCTCAG------AGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG--GCAGGAACTGGACCTAGA-AGAGTAGGATAGAAACATTATAGGGAGAAGCTTCTGGTGAGT---------GTCTA----------------CTGACAGTCTGTCAAACACAT---------------GCTTTCCC----------TGACCTATCTGCTTCCTAAGCCAAG----ATCTCTATGAAATAAATAGGACCACGAAG-GCACATGTCTATCCAAATA------------AAACATT--------------TTCAAGACTATAAGGTAGATCCACGAGCATCTCTAATAAATGCACTCAGAACA-----------ATGTGACTTATAGGACTCCTAGATCCCTGACTGTAAGCCAAACACTCCTTCCT--CCCTCGCT-----ATTATCCCCCCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCT-------AGAAGAGATCA--------------GATATGGCAGGCATGCT---------------------GTCCCACACAGTCCCAGATGATGAATGGCCCCAGACATGCGCTTACCAGATGGGAAGGTGATAGGAGACTTTCTGA-------GCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGTGGCAGAGCTAAACACTTCCCAGTTACTGGCTTC-CAGTGCTTTCCTGTACACGTGCCTAAAGATCCCTTAATGTGG---AACCAGGAAGCA
s HiC_scaffold_1 138472627 2736 - 233722169 ctttcatttaaCCT-TTCATTTAACATCCC--AGGTGCTGCTGTGTAACTACAATTTGACTGATGAGTCGAAGCTGCTGTTCAGAGTGAAAATACAAGGTTCCTAAGAATTTGAAATGAACATATA---ATCCATTAGTGCTTGTGGTGTAGAGTGTGTACCCCAGATGTATGTGAGGCTGCATGTTCTCAAATGGGTTTTGtccattttcctgttt----ctcttacGTGTTTTTCCTCTGATTCTCCCACAGTGCTCCCCAAGAAGTACTCAAGTAT--TTGAGAGGAAGAAACCTATCTCACTGATCCCAAAGCATGCTCAAATCTAAGTCTAATATTTGTGTCAATGTCCTCAGAGAATT-TGAATTAACAAGTTGACTGATTTTACTGGCAAAGCAGATTTGGCTTCTACTAACATTT-------CTTGTAACAGACATTATtccaatttattaaaaagttatgtGTCCAAGAATATTGCAGCAAAAAGATCTCCCAGTATGGTTCTTTcgaagcaaatgaaataaaaaacct--------tGTTTGATTCGGTTGAATTCGTA-AGTTTTATATCGGTTTG-ATTCT----CTATCATTTCCATTCTGAAACTGATTTCTCACATAGATTTCAGTTTTTCCTGCAGCCAGTCTCAT-------CACCTTTCTCAAATTATCTCTAGCATCACCATGGCGTGGTTTAACGTCATGGCTT--TTTCTTCTGCATCAAAGTTCAGCTGCTTCAAAGCTCTAG--GGAACAGCACTGGTGTGTTTCCATGGAGAATGACCGTTTGGGTTTGAAGTAGAGGAAAACATCGCATGATTCtaaagctgaggcagaagctcTCAGAGGAGGATGTT--TGGGTAACTATAAAATAGTTATGTCTATTAAACTCTTGAAACAATTTTATAGATATGTAACCTATAATTCTTGAGACATTTCtcatatcttttttcttctggttttcaTTGTGTCTCCAACTTCTCTATGACATTTTTTCCAGATAAAGAGTCTATTA----CAATCTGTTCAGATT----------TAACTGCTCAATTCAACCACCACCCAGGATCCATTGTTTTCATTTCAACTATATCTTCTTCCTTCAGACCGTTCTTTCCACCTTTACTTCCTCTGCCCTTTTTGGATTCATTCTTCCCATATTTTTGATCCTCTGTATCCTCCTCAGGGGAGACTCAGGATTCTAGTGTCCAATCATGTCCactccacattaaaaaaaaaaagtcagctgtTTTTCCAAGAGTACTTTTAGTAAGCTAACAGTGCTTA-GCCCCCTTCTTACCCCAG----GTCCTCAGAGTTCTC-CAGGGCTCTTTATCCTGAAGGACACCCCGAAGCAGTAATTTTTCATTCCCAAGGGAGGCCTATTCCTAGTATTGGGTATGCTAGAATTTGAAAAATAGTGAAAAG---------------------------------TCACATCTGCCCAACAGTTTTGGGTGCCGCTG---------AGTCAATGGACAAGAGATa--------gttttgaaaaacagttttaatttttgacaagGTGAGACAGAGGTGTTATAATTACTACAAAAACATGGGACTGTTTGGGACATTGGAAAGCACAGGGGTAGAGGCTTCTGAAGGAAACACATTCCTCCCCATGAACACTTTAGCTTCAAGTTCCAAGAAAGACAGCCAAGGATCCCTGGGAAAGGAGT--GCCAGCTTGAGGCTTTCTCTTGGTCATTGGAGACTCTGCTTTCT-----TCAGAAATCTCTCTATGTCAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCC-AGACTGCAGACC-CTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGCACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGGGATGGAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagca---ggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAG------------GGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTCAGTGCAGTGTGGGAACCTGGAGAGAGCAAG---GAAAAAGCTCAGAGAGAAACTTACAGCCAGTGGGCCTCACGTCTAAGTTCCTAGGACACAGCTGCATGACTGTGAGGAACATCACGTGGGCAGAAGGGCTTAGTCATGCCAGGTGTCGCCCATGTTGCTCTACACCCAGGATAAATCAGTGTCAGTTAAACTAGACACCCAAGTTTTCATATTTCCCCAAACACCTAGAGAATGCAACTATTTGGGAAAAGGGTCCTTGGGAAATATGGGGCAGCTTCAAGAGA---------AAGAGGATGCAGGACATTTCTGAATTCCTGTAGCCTTTGAAGGTCACAAAGTGCTTGTCCTGTCCCACAGGCTCCCTCCTGACCTCAGCTCCAGGATTACTTGCCCTATCA--ATCCCTCCTTGCCCTCTCCCTCTGGTCTCTGTTCCAGATCTCTTCATTTCCCTCTCCTCTGCTGTGACTGTAATATTCCCACCACCACCTGAAACTGAGTCCCACTCCCTCCTGGATACTCAGTGGC--------TGCACCTGAGGCAACAGAAGGAGAGAAGGTTGTGCCTGAGGTGCCTGTGGGCTGTGGGTGAGGAGTCCCACGAAGGAGCC--TTTACCCTACGCATCGCTGGTGATGCACAGGCTGAGTTTGCTGCTGCTTTCACAACCAGGAGTGGTGAC--ACCTGGGCACGTGCCCAGAACTAGGTTCTCAGCcttttgatg-gtattttcataatGTTCCTGTAATGAGATTCCACCAGGAAGCA

a score=12230
s chr3            92925459 340 + 160039680 CTCCAAACCCTTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCAC---------------AGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCC---------------------TCCCTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttgggg---agcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAG
s HiC_scaffold_1 138145798 363 - 233722169 CCCTGAACATTGCTCTTCAAGATTAAGGATCCCCTTCAGCAACAGCCCC-AGATTGCTGGCTACTCCCCCCTCCACAGCAGCTGGAGCCCCTCGAGGGCTGGC---TGCAACAGCCA---------GAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGG---GCACTTAGGCGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGG---TGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAG

a score=23712
s chr3            92925459  921 + 160039680 CTCCAAACCCTTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG--GCAGGAACTGGACCTAGA-AGAGTAGGATAGAAACATTATAGGGAGAAGCTTCTGGTGA---GTGTCTACTGACAGTCTGTCAAACACATGCTTTCCCTGA--CCTATCTGCTTCCTA---AGCCAAGA----------------TCTCTATGAAATAAATAGGACCAC----------------------GAAGGCACATGTCTATCCAAATAAAAC--------------ATTTTCAAGACTA-TAAGGTAGATCCAC---------GAGCATCTCTAATAAATGCACTCAGAACA---ATGTGACTTATAGGAC----TCCTAGATCCCTGACTGTAAG---CCAAACACTCCTT----CCTCCCTCGCTATTATCCCC------------------CCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCTAGAAGAGATCAGATATG-----------------GCAG-----GCATGCTGTCCCACACAGTCCCAGATGATGA-ATGGCCCCAGACATGCGCTTACCAGAT---GGGAAGGTGATAGGAGA-------CTTT--CTGAGCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGTGGCAGAGCTAAACACTTCCCAGTTACTGGCTTCCAGTGCTTTCCT
s HiC_scaffold_1 138633150 1042 - 233722169 CTCTGAAATCTCTTCTCACAGCATCTGGATCCAGGTCAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------GGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCAGGGAACCTGGAGAGAGCAAGGAAAAAGC--TAATTGAAAAAGTTTTAGGCCAATGGTGTCT-CTGGGATGATCTTATA-ACATCCTTGCCCCCAACTCTAGCTGTTTCCTGACTagccaggaaaaaggaaaatgtgtgTCCCTTTAAATTGAATGGAAATACATTTCCTTCCACTTTACTGTGGAAGAGCAGGTGACTGCTCTAACTGGACTTGGAGTCCtctgtattcacagaaatagtgaAGTGAATTCCCAGCTTTGGAGAGTAGCTCCTGCAGA-GCTCTCTGGGCCCCTGTGTGTCTCTCAGGAAGGAGCTAGGGGGCGCTGACAGCAAGGACTCAAGCATCCCACAGAGCTTCCCTGCCCCCTGTCCCCATGCCCTGCCTCCTGCTGCCCTCCAGGTTCTACCCTCTGCTGCCTCC------ATGGCAGACACC---TCTGCTTCCCTCTTCCCCTCTGCAGTCTGTGCTTATCTTCCCACGCTCTCCTGACTGGGCATCTGTGCCCTGCTGGATGCTTACCAGATTCAGAGGAGGCAGCAAGAGGAAGAAGCCTGTGGCTGAGGAGGCTCTGTCtgaggaggccagggcaggagccCTTTTATCCTGTGTAGGGTCAGTGATGCACAGGCTTAGCATGCTGCTGCTTTCACGCCCAGCGGAAGTGACCGAGCCCAGCAGTCCC--ATCCCAAGTCTCCAACCTCTTCCT

a score=41252
s chr3            92925459 2199 + 160039680 CTCCAAACCCTTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGGAACTGGACCTAGAAGAGTAGGATAGAAACA-TTATAGGGAGAAGCTTCTGGTGAGTGTCTACTG-ACAGTCTGTCAAACACATGCTTTCCCTGACCTATCTGCTTCCTAAGCCAAGATCTCTATGAAATAAATAGGACCAC---GAAGGCACATGTCTATCCAAATAAAACATTTTCAAGACTATAAGGTAGATCCACGAGCATCTCTAATAAATGCACTCAGAACAA----------------------TGTGACTTATAGGACTCCTAGATCCCT-GACTGTAAGCCAAACACTCCTTCCTCCCTCGCTATTATCCCCCCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCTAGAAGAGATCAGATATGGCAGGCATGCTGTCCCACA----CAGTCCCAGATGATGAATGGCCCCAGACATGCGCTTACCAGATGGGAAGGTGAT--------AGGAGACTTT--CTGAGCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGTGGCAGAGCTAAACACTTCCCAGTTACTGGCTTCCAGTGCTTTCCTGTACACGTGCCTAAAGATCCCTTAATGTGGAACCAGGAAGCACTCATGACTGCAAAATCACTTCCTTTTGTTCTTCCCCAGACA-TTGACCCACCTTTCCCCATTCATTCACAAGCTCTAACCCTGTTTTGACCTCTTAAG-ATTATTAACATGGAGATGTATATAGGA------TGCCCAT------TGCTCAAAAATTGAATACATTGATGGGATCGCAATGTT-TTATCATGGATGTATTATGAAGAGCTCAAGCATAAGGCTCAAGC------TTTTAAAGGG----AAAGCCCCTATTGTACT-----GCAGATCAAAAATTA-------TGGGACAGG---------ACTTTCAGATGTTCT----------CTGGGGGTGACAGTAGAGAAAAGGCAGTGCCTTATAGGGATACAGTGTATAGAAGACAACAGAAAGATACCTGAGACCAGTTTCAGAGAAGGTACTTAGAGATGGCAAGACTCACAACTTTTATCATTAAGAAGAaagatctcc---ccagtctagtcaccccatcttca-gtctctggcaaccttcattt----------tacaccat-----------gctcctttaagtgca--atttattttaaaatccaatcatgactgttatcatgcgaaaatagatctttttgttgatagcttatttcacttaatgtgacctcttccagattcattcctgttggctc-----aaatacttgtcgttattttc---caaagcc----------tgattatatgtcacatgttctatatgcattcatccacaaatacacattttggcagattatttattatagatctcgcaaaaagtgcaacaataaatat-gagggtgtatatcttttcagtgtatgaatgcccctttccttttgggtatatacagacctagtgacattgatgaccacacagca-gttagttttaaattcttttcagaacctctatactatcttctacaaaggctgggaccctttacactaatatcctcttttttttcttcaaaatttttgcaatacttgttctttcttgt-attttaggaataaccaatctcacaagagtgagggaatgtttcattgtagatttaatttgtacttctctgatgattaaggataataaaccatctttcagacatctgcaagccatt-tgtat-gccttttaagaaatatttcctcaggttgattctctgattttaagat-caggattttttctttgctattgagatctttgaattcttaatatactat-gatatttactctttataagatgtataattcacaaatatttctcaccct------aatagtcttgactctttattgtttctcgggctgtgtataagcattttatttttat
s HiC_scaffold_1 138439642 2236 - 233722169 CTCTGAAATCTTTTGTCTCAGCATCAGATTTCAGGTCAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAGACCACTGTCGCCATCACAGGAGTCTGATCTCCAGAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAGCAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGCG------------GGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAATTTTaccttga--aataaaatgcaaatatttaaacCCAGAAACTTCATAACAGTGTCTTTCATTCAGTTTGTTAA--ATGTCCTTCCTTCATCCAACCTGCTTTGTAAGCCAATATCTGTGAAAAGGAGACGGTATCCTATAGAGGGCACAGG--CACTTGGATAAGGT-CTTCCAAGA-TGCAACATGGATCATTTGGAGCTCGGGGTAGA--CAGTCAGAACAAGAATGGGAAGGACACCAGGTCCTGTGCCCTGTATAGTTCACAGCTCCCTCAAGTGCACTAGAGAGGATTCTTCCTCCCTCACCA-TAGCCTCCCCACTGCTGCCTTCCATGAGCCCCTTCCTCAA---------------------------ATTCCTTCCCACATTTGCACTCCTAACT------CTGTCCCCTGCAAGCACTCACCAGATGCAGAGGAGATGCCACGAAAGACAGCTGTGACTGAAGAAGCTGTGAA--GAGAAGCCTGGGCAGGAACCTTTTTATCTTGTGCAGGAGGTATGATGCAACATTTGATGATGATATGGCTTTGGCAACCAGGGGAGGTGCCAGTGCCTGACACATTCTAGGTGCCTGCTG-CAGTGTGTTCCTGGACACGTGCCTGAAG----------GTGGAACAAGGATGTCCTTGTGACTGTTACAGTATTTCCCTCCACTCTTCCTCAAACAGGCTGCACACCTTTGTCCATTCATTCACAGACTCTGTGCCCTTTC---CTTCATCAGCAGTAGTAATATGGCGATGTGCATGAAACATTATTTCCCAtgagaactttgcagaaaatgaTATCTTTGATGTGATAACACTACTGCTATCTCAAAAGGGTTTACAAACCCTCAAACTTAAGAGCCCAGTCTCATGTTTTAGGGGGTCATGGATTCCTTAGTTTTCTCTAACAGAGGTGAAGAAATATGATATGTGGGAAAGGAACATGAAAACTCCATAAGGTCCTGCCCTTCACCCCAGGGGCAATATCAGGACCAGTGGAG---------------CAGTG---AGCATGGAGAAGAGAGGAATTTACAAC-----------------TCTAGAGGTGATGAGAGTGACAAGTGTTCTTAAGATGAAGAAGGAGTGGTAGAACACTCTAGT--TCTCATCTTCCTGTCTGTGGGATCTACTATTTCTTCTAACTGTACCTGATAGAAGCAAATGGCTTCTGTGTTTGGAAGATTTACGGAAAAGTGCAA-AAGAATTATGTTTatcaaacattttgttttcttact--tgATTTATTTCAACTAACACACTGTTCTCCAGGCTCATTCATCTTTTCACAATGGAaggatttgtttctctttttatgctgagCAGCATTCCTTGTGTTTACATGttacattttccttatctatttATCCATTGATGGATACTAAGTCAGATTAGATCCTTTTGATACTGTTCATAATGGTGTAATAAACATGGAGGGCATACATCTATTCAAAATGTTAGT---TGTTTTCCTTGGGATATATACTAATATC-TAACACATAGGATCATAAAGCatgtctgttttaaatttttagagaaaTTGCTCTCCTATTTTTAACAATGACTGTACTGATTTACATT----CCTGCAATTAGTAGATAAGTGTTTTCCCAGTATTTGCTTTCATTTGTGGTTTTGATGACAGGCAATCTAATAGGTAAGAGGTGATATCTCTTTGacattttaattggcatttctctgaTGATCACTGATGCta----ctttttcctatatttatagGACATTatgtgtcttcttttgagaaatatctattcagttCCTCTGGTTATTTTTAAGTTGCggtatttttttcttacagtcaAGCAGTTCATGTTCCTGGAGTACTGTGGATATTAATTCCTAATCAGATGTATTATTCAcaattattttctccctttttataaAGTGTCTT--TCCAATCTTGTTTCCTTTACtctttat--gttctttattttgaT

a score=10129
s chr3            92925460 339 + 160039680 TCCAAACCCTTTTGTCTCAAACTCAGGATGCAAGTTAGCAGCAGCCCCCAGA------GCTGTGGCC---------ACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTGC---GCCTGTGGTGGCTCAGACAGCAGCCTC---CCTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTG---------CAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAG
s HiC_scaffold_1 138135487 338 - 233722169 TTCAAGTCTTCTTATTT-AAGTTCAGAGTCCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCTATAGCAGCTGGAGACCCCAG-CAGCTGGCTGCAGC------------AGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTG------CAGCAGCCCCCAGAACTGACCCTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACTACTTTGGGGCCTTTAGAGGT--------AGGATACTTGGGGG---TGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAG

a score=11442
s chr3            92925473 327 + 160039680 GTCTCAAACTCAGGATG----CAAGT-----TAGCAGCAGCCCCCAGAGCTGTGGCCAC---------------AGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTG------------GGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCA-----------CGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGA------------GGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGG
s HiC_scaffold_1 138180330 375 - 233722169 GCCTCAGACAGAGGAGGAAGTCAAGTCCACTTAGCAGCAACCTCCAGACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGC------------AGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGGC-----CTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGG

a score=10565
s chr3            92925481 315 + 160039680 CTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTG------GGACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttgggga----------------AGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGG
s HiC_scaffold_1 138377573 329 - 233722169 CTCCTGACCCAGCTCAGCAGCAGCCTC-AGAGccagggcagcagccagagcctCCA---------CTGGGGTCACACTCACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTGGGCATGTGGTGGCTCAGGCAACAGCCACCACCCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTGGGACACTTTGGAAG-GCCTGGAATTGCTACTGGTTTTGCTGGTAGGACATGTTGG

a score=8027
s chr3            92925481 355 + 160039680 CTCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGG-AGCTCCTGCGCCTGCATCTGTGGGACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTC---AGAGCTG------------GGGACACTGCAGCCCCCAGAGCTTGTAGCA-CAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGT----------GCTctttggggggcactttggggagcactttgggg------------aAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAG----GAACTGGACCTAGAAGAGTAGGATAGAAACATTATAG
s HiC_scaffold_1 138528399 386 - 233722169 CTCAAGGCCCAGTGCAGAAGGAGCACCCTGGGCCATGGCAGCAGCCTGAACCCCCAAGATGT----CACACTCACG----CATGATCCAGCAACTTCTGGGTGTGGAACTGGAACGGAAGAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCTACTACAGTCTCAGTAGCTG--AGCAACAGCAGGAAGAGCCTGGAGATCAGCAGGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGCCACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTCAGTTGCAGTGAAAACGACTTTTA--AGTAAAATTGAAACCATGTAG

a score=23652
s chr3            92925482  897 + 160039680 TCAGGATGCAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCT---GCGCCTGTGGTGGCTCAGACAGCAGCCTCCCTCAGAGCTGG------GGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG--GCAGGAACTGGACCTAGA-AGAGTAGGATAGAAA--CATTATAGGGAGAAGCTTCTGGTGAGTG-----TCTACTGACAGTCTGTCAAACACATGCTTTCCCTGACCTATCTGCTTCCTAAGCCAAG------------ATCTCTATGAAATAAATAGGACCAC--------------------GAAGGCACATGTCTATCCAAATAAAAC------------ATTTTCA---AGACTATAAGGTAGATCC---------ACGAGCATCTCTAATAAATGCACTCAGAACA---ATGTGACTTATAGGAC----TCCTAGATCCCTGACTGTAAG---CCAAACACTC-------CTTCCTCCCTCGCTAT---TATCCCC------------CCCACCATGGCCTATTCTGGGCCTCTTCCTAGGGTCTAGAAGAGATCAGATATG-----------------GCAG-----GCATGCTGTCCCACACAGTCCCAGATGATGA-ATGGCCCCAGACATGCGCTTACCAGAT---GGGAAGGTGATAGGAGA-------CTTT--CTGAGCAGGCTGTGGATGAGGAATCCAGAGTAAGGGCCTTTTTATTCTCTGTAGAGCTGGGGAATCATCACCCAAGCATGTTGCTGTTTTCACAACTAGGGGAGGT---------GGCAGAGCTAAACACTTCCCAGTTACTGGCTTCCAGTGCTTTCC
s HiC_scaffold_1 138647031 1019 - 233722169 TCAAGATCCAGGTCAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCCCTCAGAGCTGGAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAG------------GGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCGGGGAACCTGGAGAGAGCAAGGAAAAAGCTCATT----GAAAAAGTTTTAGGCCAATGGTATCTCTGGGATCATTTTATAAAATCCTTGC--CCCCAACTCTAGCTGCTtcctgaggaaaaaggaaaatgtatatcCCTTTAAACTGAATGGAAACATTTCCTTCCACTTTACTTTGGAAGAGCAGGTGACTGTTCTAACTGGACTTGGAGTCCTCTGTATTCACAGAAACAGTGAAGTGAATCCCTTGCATTAGAGAGTAGCTCCTGCAGA-GCTCTCTGGGCCCCTGTGTGTCTCTCAGGAAGGAGCTAGGGGGCGCTGACAGCAAGGACTCAAGCATCCCACAGAGCTTCCCTGCCCCCTGTCCCCATCCCCTGCCTCCTACTGCCCTCCAGGTTCTACCCTCTGCTGCCTCC------ATGGCAGACACC---TCTGCTTCCCTCTTCCCCTCTGCAGTCTGTGCTTATCTTCCCACGCTCTCCTGACTGGGCATCTGTGCCCTGCTGGACGCTTACCGGATTCAGAGGAGGCAGCAAGAGGAAGAAGCCTGTGGCTGAGGAGGCTCTGTCtgaggaggccagggcaggagccCTTTTATCCTGTGTAGGGTCAGTGATGCACAGGCTTAGCATGCTGCTGCTTTCACGCCCAGGTGAGGTAACAGCCAGGGCATGGCC-AGCGCCATCCATTCACCGACTTCCTGTGTGCTCC

a score=12704
s chr3            92925490 306 + 160039680 CAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGAC------CTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---------------------------CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACA------------CTGTGTTGTGCTctttggggggcactttggggagcactttggggaA---------GGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGG
s HiC_scaffold_1 138333231 351 - 233722169 CAGCTCAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCT---------CACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGG

a score=12324
s chr3            92925490 305 + 160039680 CAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGG------GACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGG------------CAGACACTGTGTTGTGCTctttggggggcactttggggagcactttgg---------ggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG
s HiC_scaffold_1 138408310 326 - 233722169 CAGCTCAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCT---------CACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGGAGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=12112
s chr3            92925490 305 + 160039680 CAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGG------GACCTGCGCCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGG------------CAGACACTGTGTTGTGCTctttggggggcactttggggagcactttggggaA---------GGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCG
s HiC_scaffold_1 138368915 326 - 233722169 CAGCTTAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTGGGCT---------CACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCTTG

a score=11004
s chr3            92925490 317 + 160039680 CAAGTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTGACCACTGCCACGGTCAC---------------------------------------------------------------------------------AGGAACTGGAGCTCCTGCGCCTGCATCTGTG------GGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTG------------GGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCA-----------CGAAGAGGCTGCAGGCAGACACTGT-GTTGTGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGGAACTGGA
s HiC_scaffold_1 138728653 425 - 233722169 CAGGTCAGCAGCCGCTCCCTGAGGTGTGACACCAACTGGAGCCCCCAGACTGCtggccactgccaccaccactgctgcAGCAGccactgccaccactgctgctaCAGCAGCTACTGCTACTGCCACAGCAGCCACtactgccaccactgctgcagcAGCCAGAGCTCTGGTGTCGGTGTCTGCGTAGAAGAGATCGGCGGGGCTTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAGCTGCAGCAGCCACCCGAGCTGCAGCAGCCTCCAGAGCTGGAGCCACAGCAGCTGCTAGAGCCCAGGCTACAGCAGGAAGACGCTGGAGGTGGGC------AGGGGGACTTGGGTGGGCATTTGGGGG---TGCACTTAGGAGGAGGCTGGCACTGCTTCTGGCTCTGCTGGCAGGACATCTCGGCAGGAAATGAA

a score=12667
s chr3            92925493 336 + 160039680 GTTAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAGACTGCTG------------------------------------------------------------ACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTGGGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCC---CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTGCAGGCAGACACTGTGTTG------------TGCTctttggggggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAGGAACT----GGACCTAGAAGAGTAGGATAGAAAC
s HiC_scaffold_1 138300161 402 - 233722169 GCCATCAGTAGCCTCCAGAGC------AACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCT------ACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGGGAA---CACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGCAAGAGTTAAGAGATCctagatgaa-aaaatagaaac

a score=10771
s chr3            92925496 297 + 160039680 AGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAG-ACTGCTG-----------ACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTG------GGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCC---------------------CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTG---------CAGGCAGACACTGTGTTGTGCTctttgggg---ggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCT
s HiC_scaffold_1 138258191 348 - 233722169 AGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTT---GGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTT

a score=11279
s chr3            92925496 303 + 160039680 AGCAGCAGCCCCCAGAGCTGTGGCCACAGCCTGAACCCCCAG-ACTGCTG-----------ACCACTGCCACGGTCACAGGAACTGGAGCTCCTGCGCCTGCATCTGTG------GGACCTGCG---CCTGTGGTGGCTCAGACAGCAGCCTCC---------------------CTCAGAGCTGGGGACACTGCAGCCCCCAGAGCTTGTAGCACAGCACGAAGAGGCTG---------CAGGCAGACACTGTGTTGTGCTctttgggg---ggcactttggggagcactttggggaAGGGCACTTGGGAGGAGGCTGGCACTGCTTCTGACTCTGCTGGCAGGACATCTCGGCAG
s HiC_scaffold_1 138197568 354 - 233722169 AGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTT---GGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGG

a score=28459
s chr3            92932029 1973 + 160039680 ATATAATTAATTA--TAAGATATAA----GTAACTGTGTATATCACCCATCACCTGC--------TTTTTATGGGCTAATTCTAAGCCATAAATATTTCTTTCTGTAAGAAAACACACATATATGATGTGA---TATTTTAACAATCAAAATATTTAAATTGTATGTGAATTACTAAAGTTGGTAACTATAGCCCAAAATACATTTTACTCAAGTATAATATCACATCATG----TAAGATT------------------TCAGCTTACATGAATTTACAAATATCAAGCAGAGGCATCTTCATATGTGTAATGCAATTATTATTCTATTTAAATTTGATAACCTGCACCTGTTTTTCTGTG-----TTCAGAAAGTCCAT--TTCATTGTTAGAAGCCATGAGGTTACTCAAGGATTGTCACCATACAAGGCCTAACACTCCCCCATCACT--TCCAGGTGCCCCACTGATAGAGCTCAGGGGACAGCAGCAAATTACAACTGAAGGTCATGTTCCTTGGGCAGCATGA--AATTTGTGGAAAA-------CAATATTTTATGATTTAAGCTTTGGATTTtgtgggtttgtgtgtgtgtgtgtgtgtgtgtgtgt--------------gtgtgtgtgtAGAATTCATTAACAATCATGCCAAAGAAAATAAGATAGAATTATTTTCCAAGGCATGCTACATAAAAGAGGAAAAAAGAAAAGGAGGTAGAagggagagagggagggaggaagggagggagggagggagggagagagggagggagggagggagggagAAGGAAGGAAGAGCAGTTTCCTGGAGACTC-ATTGGGATGTATATGAACAATCCTTGTTCCTGGTTCCTGGTTCAATCTT--CAGTTGGACTTTATGGATATACCAGAAAAAA------ATCCCA---CTGGGCATGTGTCTAGGTAACACCTCCTCTGGTTGTGAAAGCAGAAGTATACCCA---TGTGACATCAGCAAC--TGCACAGGATAAAAGCACTCCTGCCCTTGGCTCCTCTGCCAAAGCATCCTCAGACACGGA--------------------CTTCTGTCTCCTTTGAATCTAGTGAGTATCCAGCGGGG--TGGGCCTTGGAAGAAGTTGGAAG--GGAGCATTAAGATCACAGTAGTAGAGAGAAAAA-----ATTTCTTCCACAGAAATCCAGACATAAGTGCAATAGGGGAGAAAAAAAAACAATTTCTAGCATTCAATTTAAAAACAATGAGTTTATAGTAGGTCAGTATTTAAACAGGCAGAATGAAG----GTGGT---TGACAAGAATTCTACAATCTACAAAAGTCACAGGCTCTGCGTCCACATCCTACACCTCATGCCCTTCCCGTTCAGGAATTCACATGTACCCTATGACACCGAATCTCCAGATTGGTTTTTTTCCCCCAAACATATGCACCTGCCTGGTATTCTTCAAAGATACAAAAAAACAGATTACCAGACAGACTCAGCCTGTACTTCTAGTGCATGGGTAGCCAATAGAAGGGGAGGTACCTGGTACTATGAAGTGAATTCTATTCATATCAGCTTTCCCCAGTTCTTGAAGCAGTAGA--AAGAACATACCAGAGATGAGGATACTACT--CTGTAGATTACTAAC--ACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGAT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCA--ACATCCCAGGGGTCAAGAAAAGCCC---AGCTAGTCTTGTTTTGTC--TGATCCTGGACACCCTTCTCTG
s HiC_scaffold_1 138456345 1954 - 233722169 atttaattaattacatAAAATGTAACTAAGTGACTATGTATACTGCTCAGCAGCTACGTAATTGTTTCTTGCCAATTAAGACAAAGGCACTAATGTTTTTCCCTGCTGCAAAGTATAACTTCACCATATAACACTACTTTAATACCAAAATAATTTCTGTTATGTGTCAATTATTaaagtt--taattatagttctagttatatttttct----tttaatgttgtaTGATGCTACTATAATTCAAATAGGAAGACAGAAGTGAGGGTATAGTAATTGTCTAAAATCAAACAGAGGACAATTTTAATATGGAATAC-----TTCATCAATTTACCCATCATAATGTA-ACTTGTTCTGCCCTGAGAACCTTAGAAACTCCATGCTGCCTTCTTGGGGCCTTAAAAACATCCCTGGGGCTTGTAATAGACGGGGCCCT-TGTGTTCCCATTGGTAGCTCAGGGGTCTCATCGCTGGAAGTGGACAGGTGGCAAAAAATCACAGCTAATGGCCTTAGTGATCGAGTAGCCTGGGGACTTTGTGCAGAATCTGGCACAAATGTTTGTCACTTAGGATTTG---tttagtgatttatttctttttctgtctgtgtgcCTGTCCTTTCAAGCCATGGTCTCAGGACATACATCAGTCATGACCATGGCCA--------------------TTTCCAAG-CAGGTT-CATGGCCCAGGCTGAGACCCAAG-----ACAAAAGtacaaaagaggagaaaaggaaggaagagaaggagggaaagaggcacGGAAAG-------------------------GCTTCCAGTACACCCCAATGAGAGACACGTGGGTGAT----ATTCCTGCTTCTTGGTGGAATCTCACTACATGGACATTATGAAAATACCATGAAAAGGCTGAGAACCTAGTTCTGGGCGCGTTCCCAGGTGTCACCACCCCTGGTTGTGAAAACAGCAGCAAACTCAGCCTGC-CCATCACCAGTGGTGCGCAAGATAAAATATCTCCTTTGTGGGACTCCTCACCTACAGC--CCACAGGCACGTCATGCACaaccttctctccttctcctgcctcaggtgcAGCCAGTGAGTATCCAGGAGGGAGTGGGACTCAGTTTCAGGTGGTGGTGGGAATATTGCAGTCACAGCAGAGGAGAGGGAAATGAAGAGATCTGGAACAGAGACCCAGA------------GGGAGAGGGCAAGGAGGGATT------------------AACAGGGCG-----AGTAATCCTGGAGCTGAG--GTCAAGATGGAGCCCTGTGGGACAGGACAAGCACTTTGTGACCTTCAAAGGCTACAGGAATT-CAGAAATGTCCTGCATC-----CTCTTTCTCTTGAAGCTGCCCCATATTTCCCAAGGACCC--------------------TTTTCCCAAATAGTTGCATTCTCTAGGTGTT-TGGGGAAATATGAAAACTTGGGTGTCTAGTTTAACTGACACTG-ATTTAT----CCTGGGTGTAGAGCAACATGGGAGACACCTGGCATGACTAAGC-CCTTCTGCCCACGTGATGTTCCTCACCCTCATGCAACTGTGTCCTAGGAACTTA---GAGGTGAGGC--CCACTGGCTGTGAGTTTCTCTCTGAGCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGC-ATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGACAACCCCTTCTCAAATGCCCCTC------------CCCCAAGTGCCCCCAGAAGAGcccagcactgtgcctgcctgctACCTCCTCCTGTTCTGCCCCCACATCTGTGGGCTGCAGTGGCCTCAGCTGAAGCTCTGAGGGAGGCTGCTGCCCGTGCCACCACAGACATCACAGGTCTCATAAGTGCAGGCTGCGGAGTTCAGACTCCTGTGATAGTGACAGTGGTTGGCAGTGTGGGGGCTCTGGCTGTGGTCACAACTCTGGGGA-TGCAGCTGACCTAGATC-TGATGCTAAGTTGAGAGATTTGTTAGGAAAGAAGAGACTCCAATGACCAAGGGAAAGCCTCAAGCTGGCAATCCTATCCCAGGGATCCTAGGCTCTCTTTCTTG

a score=23578
s chr3            92932891 1056 + 160039680 CACCTCCTCTGGTTGTGAAAGCAGAAGTATACC---CATGTGACATCAGCAAC--TGCACAGGATAAAAGCACTCCTGCCCTTGGCTCCTCTGCCAAAGCATCCTCAGACACGGACTTCT----------GTCTCCTTTGAATCTAGTGAGTATCCAGCGGGGTG----GGCCTTGGAAGAAG----TTGGAAGG-GAGCATTAAGATCACAGTAGTAGAGAGAAAAAATTTCTTCCACAGAAAT-CCAGACATAAGTGCAATAGGGGAGAAAAAAAAACAATTTCTAGCATTCAATTTAAAAACAATGAGTTTATAGTAGGTCAGTATTTAAACAGGCAGA--ATGAAGGTGGTTGACAAGAA--TTCTACAATCTACAAAAGTCACAGGCTCTGCGTCCACATCCTACACCTCATGCCCTTCCCGTTCAGGAATTCACATGTACCCTATGACACCGAATCTCCAGATTGGTTTTTTTCCCCCAAAC---ATATGCACCTGCCTGGTATTCTTCAAAGATACAAAAAAACAGATTACCAGACAGACTCAG---CCTGTACTTCTAGTGCATGGGTAGCCAATAGAAGGGGAGGTA---CCTGGTACTATGAAGTGAATTCTATTCATATCAGCTTTCCCCAGTTCTTGAAGCAGTAGA------------------------AAGAACATACCAGAGATGAGGATACTACTCTGTAGATTACTAAC--ACGTGTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCAACATCCCAGG
s HiC_scaffold_1 138695337 1011 - 233722169 CACTTCCACTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTG-CATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCATCCAGCAGGGCACAGATGCCCTGTCAGGAGAGCGTGGGAAGATAAGCAC--AGACTACAG-AGGGAAGAGGGAAG----------CAGAGGTGTCTGCCATGGAGGCAGCAGAGGGCAGAA----------CCTGG------------------------------AGGGCAGCA-----GGAGGCAGGGGATGGGGACAGGGGGCAGGGAAGCTCTGTGGGATGCTTGAGTC-----CTTGCTGTCAGCGCCCCCTAGCTC-----CTTCCTG---AGAGACACACAGGGGCCCAGAGA-----GCTCTGCAG----GAGCTACTCTCCAATGCTGGGAATTCACTTCACTG----TTTCTGGGAATACAGAGGACTCCAAGTCCAGTTAGA-GCAGTCACCTGCTCTTCCACAGTAAAG--------TGGAAGGAAATGTATTTCCATTCAATTTAAAGGgacataaattt---tcctttttcctggctACTTAAGGAAGCAGCTAGAGTTGGGGGCAAGGATGGTATAAGATCATCCCAGAGACAC---CATTGGCCTAAAGCTTTTCCACTGAGCTTTTTCCTTGCTCTCCCCAGGTTCCCTGACTGC-ACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGAACT-TAGCA----GCGGTGATGAGAAGTTTTAAAGGAGACAAAGTCCAAGG

a score=12349
s chr3            92933560 348 + 160039680 GTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------------------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138523002 366 - 233722169 GTTTCATTACTTT---CAGGTTGGAAAAGTCACAACAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCTAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGATTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=12437
s chr3            92933560 348 + 160039680 GTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAG------------AGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG-GTC-----CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138506194 366 - 233722169 GTTTCATTACTTT---CAGGTTGGAAAAGTCACAACAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTGTCTTCCACCACTGCCACAGGCAACAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGA

a score=13187
s chr3            92933560 348 + 160039680 GTTTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------------------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138572560 366 - 233722169 GTTTCATTACTTT---CAAGTTGAAAAAGTCACAACAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCATCACCGACACAGGCACCAG-GCTCC--------TGACTGTTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=13134
s chr3            92933562 346 + 160039680 TTTCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCC---------CTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAG------------CACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138583835 365 - 233722169 TTTCATTACTTT--CAGGTTGGAAAAGTCACAACAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCAGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCGCAGTCTCTTCCACCACCGCCACAGGCACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGA

a score=16064
s chr3            92933564 378 + 160039680 TCTTTCCTTAAACAGGTCAACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCAACATC
s HiC_scaffold_1 138610623 353 - 233722169 ttttattttagtcAAATTCTCTGACTGC-------GTGTCCTGCCAACATAACTAGCAGCAGTGCCAGTCCCCTCCC-------------------------CAACGTGCCCCCAGAAGAGCCCAGCATAGTGTctgcctgctgcctcctcctgctctgctcccagCCCTGGGGGCTGCGGTGGCCTCAGCTCCAGCCCTGAGGGAGGCTACTGCCTGAGCCACCACAGGTGTTGCAGGTCCCACAGGTGCAGGCTGTGGAGCTTGGACTCTTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGTGGAAGCCACAGTGCTGAGAGTTGTTGCTGATATGGGCCATGGTATAAAG-CAAAACA-TCTAAGAAAATAAATCTC

a score=4150
s chr3            92933579 69 + 160039680 GTCAACTGACTCCTGCC---AAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTC
s HiC_scaffold_1 138261789 72 - 233722169 GCCTATTGACTTCCTCTTGAAAAATGTCCTTTCAGCAGAACCAGCAGCAGTGCCAACCTCCTCCCAAGTGCC

a score=9845
s chr3            92933583 322 + 160039680 ACTGACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGCGCAG---------GTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCA
s HiC_scaffold_1 138597772 301 - 233722169 ACTGAACTCTCTTAAGATATCCTgtcagcaaaagcagcagcagtGCCACTCCCCTCCCAAGTG---------------CACCCCAAAATGTCCACTGCAGTGTCCAGCATCATGCCTTCCTCCAGTATTTTCCTGCTGTGGCTCCAGCTCTGGGGGCTGCTGT------AGTTCTGTGGGTTGTGGCTGCTGCCTGAGCCACAATAGAACTAGCCTCTTCCAATCCTAC---TGCAGGCCCCAGGCTCCTAACTGCTCTGAATGTG---------AGCCCAGTGGGGGCTCTGGTTGCTGCCATGGCTCTGAGTGCTGTTGCTGAGCTAGACCA

a score=22644
s chr3            92933587 1637 + 160039680 ACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGA-ATCAACATCCCAGGGGTCAAGAAAAGCCCAGC-TAGTCTTGTTTTGTCTGATCCTGGACACCCTTCTCTGATTGTCTGATGTTCACAGCCCTT----------------GTTCCCACCCTTCCTGTGGAATGCATGTGCCCATCCTTGGTTCTGACT-------AGAATAAAGATT--CTATCCCCACCACACTGGTGTGTCACTGTCATTGTTCCCTGTCCCTCCACAGGTGGCAGGTATGCGCTCCTCCCCTCTAACTCTCAATTCCAGCACT-CCATAATCCAGAGGGGCCGGGGTGGGAGGAAACCATAGCTCTACACAGG---AAAAGTTTAGAATTCTGTCAGACATGTTAATATTCACTTGGGTTGAAGCAGCAGGGGAAATG--------------GAATGAACAGATTC-----AGAAAGACAATATCTGCATCTCTC-----AAATGTGAAGATACTTTTAATGTTTGTTTGTATGTTTTTTAAAGAAAGGGGTATGGCAGGTTTAGACTATTAAATTAGATTGAGATCATGAAATAAGAACAAGACTTGGTAGGATAGGGGGGAAACAAAAGGAGAAATAACAT--GAAAGTGGATAGGAAAGTAGGGAGATGAGGGGGAGGA-----GAAGAGCAGGTATCAGGGAGAGGAAGAAAGAGAACAATATTTTGTTGATTTTTACATA-ATTAAACTTAAACCTTTGTATGCtaatataaattattaatgaaaataattttG--TGCTTATgatgttgttc-------acattttgtgggtagaagccagggatatctctaagcatcctgcaagtcacaggctagactctacagcaaggactctccattccaagacaccagtaacacaaagactgaaaaCTTACAAATCAGGAAAGAAGTAAAGAATGAAGGTATAGGAAG-TACAGACACAAAAAACTGTACCAGAGAGGTCAGG-TGAGGATATTAAGTTAAAACAGAGTAAGTCAAGAGAACTCAC---AGAGCTGA-------TGAT-TTAGAAAGTGAGACAGTAACAGGTGTGAATAGCAAGCAGTTAGAAAAAGGGAGGAGAGGAACA-GAGAAATGCTGGTCAGA--TTACGGATTTATTTAACTGTCTGATCAATAGTTCCCTAGAGCTTCTTATGTGAGGAACTCCT--------CAGAGACAGACACTCAGCTCTATAAGTAACCTGTAAGGTCATTTCTCTGAAAGGCCACACATCTGACAGTGGATAAACTGCTTTGACCCA--------------GGACCCAGAATGCACAGCTTATAAATCCCTGCTCTTGGCCACTTGGCACTTGACTCTTCCTTGAGATTTTTTCAGGAGCTCTGCAGAAATAATGA---TCTTTTATTTAGCCTCT
s HiC_scaffold_1 138486142 1628 - 233722169 ATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCTTCCCAAGTTTCC------------CTACCCCAAGTGCCCCCAGAAGAGCCCAGCACAatatctgcctgctgcttcctCCTGCTCTGTTCCCAACTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCCGCCTGAGCCACCACAGGCACCGCAGGTCCCACTAGTGCAGGCTGTGGAGATCAGACTCCTGTGATGGTGACAGTGGTCTGCA------GGACTCTGGCTGTGGACACAGCTCTGGGGGCTGCTGCTGACCTGTAATCTGATGCTGAGACAAGAGATTTCAGAGGCTAGGAGAATCCCAAGAGCCAAGGAA----CAGCTTCATCTTGATGCGTCTT-TCCAATGAATGTTGCCCTGGCCATTGAATTCTCACCGCCCTTTCTGTCTGTGTAAATATCTCACACTACTGCTGAGGATTGTATA----CTTCATTGTGCCTCACTCAGTCAAGAAATAAAAGCTTGCTGTTTCTTTACCACTGGCATCTTATGGTCATTTCACCTTGACTCTTACCAGGTGGCTGGTCTGTGCCCTTGTCCTCTGCCCCTCAGATCTGCTGCCGCCACAA---AGAGGGTGCAGAGT----------CATTGCtctagacaagaaaaaaaattggacaCTTGGTCCATTCTTTTCATGGTGAATTTG--TGAGGCAGCATGGGAGAGGACTATGTCCTCTGAGGAAGGATGGCTTTTCCAAGCAAAGAGCATGGCTGTTCATCTCATAGGAACTGTGCAGGGTCCTGTGATGGTTA-TTGCTTACTTTTTGAA----------------------ATTATTGCTTACTTTTGATATCTTTTCATAAG--CTATTTCTGGCATTCAAATTAAGAAAC----TGTGAATTAATATTCTATAGTGATCTACGAACTATACTGGTTTGATAGCTAACTTATAAAAACCAGGT-------------------AGAACAGCATATT----CTTTTCAAGTATAGGAATTTTGGCCCTCCAGAGGCCATTAGAAAATAC--ATTAGAATATTTTTGGATGCCAAAACCGCAGCTTAGAAAGAACTTTTAGTGATTAGAGTCCA-CGATGCTCCTAA-CATC---AAAAACACAGTTTAGCTTCTTATAACGGAATTCTCTGTCCCCAAGTACCAATAATGCAAAGTTTA--------------AGAAAAGGACTGCTTCATTAAAA-ACAGACAGCTCCAAGTACCCAATAATATTCCACCAAGATATGACTGTGGGGAATGATTTAA---AGGGTAAAGGTGAATGCCTCACCAGAGAGATGAATGGGACCGATATTAGAAGATGTTATAGTATGAAGAATGTAGCCTAAG-AGTCACAGAa---tacaaaaataacatgaaaagtattatataaatgttataaattaGCATAATTATGTGACAAAAACTTATTCAG---TTCTCAGGTTTGGGAATCCCTAATTGAGCAGTGTAAACTCCTTAACCATCTAAGCAATCTGTACATTAAACGCATTTAATAATCACATTTC--ACAAATAGTGAGAT-CTTTGACCAACTTTCTCCATTCTGAGATTCAGGCTACACAGCCAGTAAGTCCAACCTCTTGGCCAGTCATCACTTCACTCCTACTTGAGACTTTT--GAGAGCCATTTGTGAACAAGGAGTCTTCTCTACTTGACTTCT

a score=21092
s chr3            92933587 374 + 160039680 ACTCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCC------CCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGA---GCATGATGTGGAGACAAGACAGTCTGGAGGAATCA-ACATCCCAGGGGTCAA-GAAAAGCC
s HiC_scaffold_1 138681942 369 - 233722169 ATTCCCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCCTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGAGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTACTGACTTGGATCTTCATGATGCG-------GATATTTCAGAGAAAGCAGGAATCCTAGGAGCCAATGAGAAGCC

a score=3076
s chr3            92933589 279 + 160039680 TCCTGCCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCT---------CCAAAGTGCTCCCCAAAGTG-----CCCCAGGAAGAGCACAGCAC--------AGTGTCTGCCTGCAGCCTCTTC-----------CTGCTGTGCTACAAACTCTGGG------GGCTGC------AGTCTCCCCAGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGC-GCAGGTCCC--ACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTG
s HiC_scaffold_1 138506233 314 - 233722169 TCCTGCCAGCAAAACCAGC-AGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCC---AGTGTCTTCCACC---ACTGCCACAGGCAACAGGCTCCTGACTGCTGTGAGTGTGAGCCCACTGGgggctctggctgctgccatgGC------TCTGGGGGCTGCTGCTG

a score=10125
s chr3            92933594 314 + 160039680 CCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCC----------------TCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCG-TGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138575273 329 - 233722169 CCAACATGTCCTACCAGCAAAACCAGTAGCACTTCCAGGC-CTTCCTAAGTGTCCCAAGTGCATCTAAAGTATCCACAAAGTGTGCTCCAAAGTGCCCACCCCAGTGCCCAGCATCATGTCCTCCTCAGATCTCTTTCTTCTGTGGCTCCAGTTCTGAGATCTGCTGTGGCTCCAGTTCTGAGGGTGGTGGCTGCTGCCCAAGCCACCACAGGCCCAGTCTCTTCCAACACCACTGCA--AGCACCAGGCTCC-TGACTGCTGTCAGT-GTGAGCCTAGTAGAGGCTGTGGCTGCTGTCATGGCTCTGGGGGCTGCTGCTGAGCTGGGTCAGGA

a score=10340
s chr3            92933594 314 + 160039680 CCAAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCC----------------TCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCCAGATCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138513744 328 - 233722169 CCAACATGTCCTACCAGCAAAAGCAGTAGCATTTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGCTCCAAAGTACCCACCCCAGTGCCCAGCGTCATGCCCTCCTTGGGTCTCTTCCTGCTGTGACTCCACCTCTGGGAGCTGCTGTCGCTCCAGTTCTGGGGGTAGTGGTTGCTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCTGAGG-CTGCTGCTGAGCTGGGTCAGGA

a score=15196
s chr3            92933600 320 + 160039680 TGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAACCTCCTCCCAAGTGTCCCTCTCCAAAGTGCTCCCCAAAGTGCCCCAGGAAGAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTCTCCCC------AGATCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAG
s HiC_scaffold_1 138548602 304 - 233722169 TGTCCTACCAACACAACTAGCAACAGTGCCAGTCCCCTCCC-------------------------CCAAGTCCCCCCAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgcttccagCTCTGGGGGCTGTGGTGGCCTCTGTTGCAGCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGATGCTGCAGGTCCCACAGATGCAGGCTGTGGAGCTTGGACTCCTGTGATGGTGACAGTGGTAGGCAGTCTGGGTGCTCTGGTGGTAGCCACAGTGCTGAGAGTTTTTGCTAATATGGACCATGGTATAAAGCAAAG

a score=3857
s chr3            92933837 150 + 160039680 GCAGTGGTCAGCAGTCTGGGGGGTCAGGCTGTGGCCACAGCTCTGGGGACTGCTGCTGACCTGGAGCATGATGTGGAGACAAGACAGTCTGGAGGAATCAACATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGTTTTGTCTGATCCT
s HiC_scaffold_1 138687925 140 - 233722169 GTAGTTGCGAGCTACCTGGGC--TCCAGGTGCTGCCATGGCTCTGGAGTCTGCTGTTGACCTGGGCCGTGAGACTGAGATGAGCAGTTTTAGAGAAATCAGAAACTCAAAAACCAAGGA--------TTAACCTCGTTCTGAAGTATCCT

a score=3603
s chr3            92935079 104 + 160039680 CACATCTGACAGTGGATAAACTGCTTTGACCCA--------------GGACCCAGAATGCACAGCTTATAAATCCCTGCTCTTGGCCACTTGGCACTTGACTCTTCCTTGAGATTTTT
s HiC_scaffold_1 138553515 117 - 233722169 CACATTTCACAAATAATGAGAT-CTTTGACCAACTTTCTCCATACTGAGATCCAGGCTACACAGTCAGGAAGTCCATGCTCTTGGCCAGTCATCACTTCACTCCTACTTGAGACTTTT

a score=9104
s chr3            92935960 836 + 160039680 CTAATTTAAATGCACCTT-----------------GCATGGTGTGAATATATCATGTCAATAGCTCTGTCATGTG-----TACACAAATCACTGTCACATTTGTTTGCTATTGATCAGATAATCCCTTCTCTGTATACCAATCCA-----------------------------------AATGAGTTAGCACCTTCTATGACCTAGGGCTGAAGCTTAGAGATATGCAAAG-----TGGCAGAATCACAATTCATTG---AGGAGATGTTGTTTGGATAGTGATC--TGACATCTGAACTAAGTTGTGCTTTCACCACACAGTAGCCTTGTCTCTCCCGGAACACCCATACCTTCAGACAGTCATCATCCATACAGATCAGGATACAAAGCCAGGAATACTGGGCTCCTGAATCAGGGTTTTTACTGAGAATAGTAGTCTGCTATTACTATACATAAAATTTTGCTCTCA-----GATATGAGTGCTATGTGCACTGTATGCTCTC--TAGGGACCTCTCT--CCTCTGGGTTTCATGCATTACTCTC-AGTG-----CCTGAGAACAGGCTACCCTCCCCCTCTTTGGTAGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCA--TTCCCAACACTGTCATCTCTGACAGGCTACTGACCCCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAAAAAAAACTTATACCTGTGAACTCTTACCTAAACCTGATTACTCCT--CAGGTGTTCATCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACGGTCTGTCCTGTTACACAGCAAGTTATACAACCAGGACTGTACCATACATGTTGGTGATT--ATGCGTTTATCACCTCATGAGTTAAATGTCTATCACAGT
s HiC_scaffold_1 138555569 876 - 233722169 CTAATTTAAGTGCAACTTCTACACACAATTTCTACACAGAATGCAATTTCACCATCATATCAATTGTATTATGTAAGAAATCTAGAAATCGCTGGCACATCTATCTAGTATCTATTATGATTTTCCTTCTAATTAAAAGAGTCCATCTTTCAGCAAGATTTATGCTGCCTCCCCAGGCTCAGTGACTCAGCGCTTTCTCTGACTTTTTcatgaa------agatatttaaaaacacatgaaagGCTTTTAAGGCATGGCTTATCAGATGTAGGTTAGACTTTGACTCTTAACATCAAGGTTGA-CTGTGTTGTCATTACATTGTACCCTC-CCAATCCTTAAACTCCTCTAACTTAGGATAGACATCACctgaggaaa-caggaagaaaatttggGCGAATTCAACTCCTGATCCAGTGTCTGTACAGAGTGTTTTGAGCTGCTCCCTTCA------ATGCTCTGCCCTCACCCCAGACTTCAGCTCTATTTAC-CTCCCTCCTTTCGGCAGGGATATCGTTGCCTACAGCATTTTATGGATCCCTCTCCAGTGTACCCCTGGAGAAGCAGCTAA----------TATAAGGAGGTGGGGTGTCTCACCCCTGTCC-----CTGCAGTTTCCCAG---TGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAACATCTCAATACATGAGGT-----ACGTAGGACTGATACCCAGTAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGcatgattgcttcattgtctaccCTGTTACCCACC--------TAAGCAAGATCATATTGAATTCAATTATGATTAGACACATTTATGGCCTTAC-AGATGTGTGTCTACTGCAGT

a score=8648
s chr3            92935968 741 + 160039680 AATGCACCTT----GCATGGTGTGAATATATCATGTCAATAGC--TCTGTCATGTGTACACAAATCACTGTCACATTTGTTTGCTATTGATCAGATAATCCCTTCT----------------------------------CTG--TATACCAATCCAAATGAGTTAGCACCTTCTATGACCT----AGGGCTGAAGCTTAGAGATA--TGCAAAGTGGCAGAATCACAATTCATTGAGGAGATGTTGTTTGGATAGTGA-TCTGACATCTGAACTAAGTTGTGCTTTCACCACACAGTAGCCTTGTCTCTCCCGGAACACCCATACCTTCAGACAGTCATCATCCATACAGATCAGGATACAAAGCCAGGAATACTGGGCTCCTGAATCAGGGTTTTTACTGAGAATAGTAGTCTGCTAT-TACTATACATAAAATTTTGCTCTCA-----GATATGAGTGCTATGTGCACTGTATGCTCTCT--AGGGACCTCTCT--CCTCTGGGTTTCATGCATTACTCTCAGTGCCTGAGAACAGGCTACCCT-----CCCCCTCTTTGGTAGGGTGG--AGTTTCTCATCCCACTCTTCCTTCTGCATTCCCAACACTGTCATCTCTGACAGGCTACTGACCCCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAAAAAAAACTTATACCTGTGAACTCTTACCTAAACCTGATTACTCCT--CAGGTGTTCATCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACGGTCTGTCCTGT
s HiC_scaffold_1 138489522 772 - 233722169 AATGCAATTTCTACACAGAATGCAATTTCATCATATCAATTGTATTATGTAAGAAATCTAGAAATCGCTGGCACATCTATCTAGTATCTATTATGATTTTCCTTCTAATTAAAGGAGTCCATCTTTCAGCAAAATTTATGCTGGCTTTCCCAGGCCCAGTGGCTCAGCGCTTTCTCTGACTTTTTcatgaaagatatttaaaaacacatgaaagGCTTTTGAGGCATGGCTTATC----AGATGTAGGTTAGACTTTGACTCTAACATCAAGGTTGA-CTGTGTTCTCATTACATTGTACCCTCCCAAATCTCA-AACACCTCTAACTTAGGATAGACATCACctgaggaaa-caggaagaaaatttggGAGCATTCAACTCCTGATCCAGTGTCTGTACAGAGTGTTTTGAGCTGCTCCCTTCTATGC-------TCTGCCCTCACCCCAGACTTCAGCTCTATTTAC-CTCCCTCCTTGCTGCAGGGATATTGTTGCCTACAGCATTTTATGGGTCCCTCTC------------CAGTGTACCCCTGGAGCCGCTGCTAATATAAGGAGGTGGGTGTCTCATCCC-CTGTCCCTGCAGCTTCCG----ACTGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAGCATTTCAACACACGAGGT-----ACATAGGACTGATACCCAGCAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGCATGATTACTTCATTGTCTACTCTGT

a score=23808
s chr3            92944390 1191 + 160039680 GGCTCTGTCAACTCCCCTGT-TGAGAAAG-AACAGCATGCTTGGCCTGTGCATCACACACCTGTCA-AGGATAAAAGAGCTGCTGCCCTGAACCATTCAGCCACAGCCTCTTCAGC-ACAGCCTTCTTC----TCCTGCCTTTGCTGTATCTGGTGAGTACCTAACTAGGGATATGACCTCAGATAAGACCCTGTGTAAGGATGACAAGCTGGACTAGACTGGGCTTAAAGGGCCTCAGCTAAAAGCAAGTGGAGATTAGAAACTGGAATTGATTGGGCTCAAAGAAGCAGAAGTGTCTA----GAAGAGAGTACAGGAATTTGACCAAGAGATGAGGGCCAAGAGAGAGGGAGGAGA---GCACAGAGAGGAGCCTTTGTGGTTACCTCAGGAGCTGTGACAAAAAAAAGAGTCCTGGATCTCAGCACTGCCT--CTACTATGATGGGGGTCTGTGTCAGCCCAGAGTTTCCTCCAAGAGTCATTTTCTCATTACCTATACTAGTTACAGTTCAGCAGAGAGCTAATTAGATATATCCACATCCCC--TCCTGCAATTAGGGAAAAATGCAAGACAATGCCTTGCCAGACATTGAGATCAGATACTTTTTGCCTTTCTAAAGTTCATTGTTCTGAGGGCACTTACTGGGGATGCATGCTGAACTTTGTGATAATCTAAAGAATGCGATCTTCAAATTGATGTGTACCTCTATGTGTCTGTTTATTTCATAGAAATCTTGACTATGAAAGT---CAGATAGGTCATGGAAGGCAGGCATTTGACAGACTAAGTCAGTAGACAC---TCAACAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCT-AGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCAGCATCCCAGG
s HiC_scaffold_1 138695329 1019 - 233722169 GGCTCCGTCACTTCCACTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCATCCAGCAGGGCACA-------------GATGCCCTGTCAGGAGAGCG-------------TGGG------------------AAGATAAGCACAGACTACAGA------------GGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGG-------CAGAACCTGGAGGGCAGCAG-GAGGCAGGGGATGGGGACAGGGGGCAG----------------GGAAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCCAAT----------------------GCTGGGA-------------ATTCACTTCACTGTTTCTGGGAATACAGAGGACTCCAAGTC--------------CAGTTAGAGCAGTCACCT---GCTCTTCCACAGTAAAGTGG---AAGGAAATGTATT-----TCCATTC-------------AATTTAAAG----------------------Ggacataaattttccttttt-------------cctggctACTTAAGGAAGCAGCTAGA--GTTGGGGGCAAGGATGGTATAAGATCATCCCAGAGACACCATTGGCCTAAAGCTTTTCC--ACTGAGCTTTTTCCTTGCTCTCCCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGAACT-TAGCA----GCGGTGATGAGAAGTTTTAAAGGAGACAAAGTCCAAGG

a score=24600
s chr3            92944983 1216 + 160039680 CCTTTCTAAAGTTCATTGTTCTGAGGGCACTTACTGGGGATGCATGCTGAACTTTGTGATAATCTAAAGAATGCGATCTTCAAATTGATGTGTAC-CTCTATGTGTCTGTTTATTTCATAGAAATCTTGACTATGAAAGTCAGATAGGTCATGGAAG-GCAGGCATTTGACAGACTAAGTCAGTAGACACTCAACAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGA-ATCAGCATCCCAGGGGTCAAGAAAAGCCCAGC-TAGTCTTGTTTTATCTGATCCTGGAGAGTCTT-CTCTGCCTGTCTGATGCTCACTGCCCTTGTTCCCTTCCT----------------TCCTGTGGAATGCATGTGCCCATCCTTGGTTTTGACT-------AGAATAAAGATT--CTATCCCCACCACACTGGTGTGTCACTGTCATTCTTCCCTGTCCCTCCACAGGTTGCAGGTATGTGCTCTTCTCCCCTAATCCATA------------TCATAAAAAA-----ACAACCATAGCTCTACACAGG---AAATGTTGAGGGGTCTGTCAGGCATGTTAATGTTCACTTGGGCTTAAGCAGCAGGGGAGGAAATGGAAACTCCAGTCCTGTAACAAGGAATGATATGTCCTATGACATGAAAACTGTATATTCATCTCAAA--------GTAGAACCCTAAGA----------CTACCTTGATGAGCTACTGTCTGCTTTG-----------ATGAGTGATTTCTAGCATCTAA--TTAGTAACTCTG-------ACTCTGTAGT------------------------TAGGTAAGT------AGTCAAATAGAGTAGCCAGTTCTTTTAAAGTAGGGATGTTGTGGTTTTCTGTGGAGTGTCTAAAAACACCCAGAGACAATTTTGTCCAATAAAATAAGCTTGGATtcaggaaaatgcaaattaaaaaccaccattag
s HiC_scaffold_1 138485917 1270 - 233722169 CCTTTCC---GTTC-TTGTTCTGACTGT-CTAGCCAGAGCTCCACACTGATCCATGTTGCATCTTGGAGAAC---CTTATCAAGTGCCTGTGCCCTCTCTAGGTTAGCAATTCCTTTTCACAGATCTTCGCTTACAAAGAAGCTTGGATGAGGGAAGTGCA-----TTGAAAAACTCAATGAA-AGACACTGTGCTCAAGAGTCTGGGT-TCAAATATCTGCATTTTGTTTCAAGGTAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCTTCCCAAGTTTCCCTA------------CCCCAAGTGCCCCCAGAAGAGCCCAGCACAatatctgcctgctgcttcctCCTGCTCTGTTCCCAACTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCCGCCTGAGCCACCACAGGCACCGCAGGTCCCACTAGTGCAGGCTGTGGAGATCAGACTCCTGTGATGGTGACAGTGGTCTGCAG------GACTCTGGCTGTGGACACAGCTCTGGGGGCTGCTGCTGACCTGTAATCTGATGCTGAGACAAGAGATTTCAGAGGCTAGGAGAATCCCAAGAGCCAAGGAA----CAGCTTCATCTTGATGCGTCT--TTCCAATGAATGTTGCCCTGGCCATTGAATTCTCACCGCCCTTTCTGTCTGTGTAAATATCTCACACTACTGCTGAGGATTGTATA----CTTCATTGTGCCTCACTCAGTCAAGAAATAAAAGCTTGCTGTTTCTTTACCACTGGCATCTTATGGTCATTTCACCTTGACTCTTACCAGGTGGCTGGTCTGTGCCCTTGTCCTCTGCCCCTCAGATCTGCTGCCGCCACAAAGAGGGTGCAGAGTCATTGCtctagacaagaaaaaaaattggacaCTTGGTCCATTCTTTTCATGGTGAATTTG--TGAGGCAGCATGGGAGAGGA-------CTATGTCCTCTGAGGAAGGATGGCTTTTCCAA--GCAAAGAGCATGGCTGTTCATCTCATAGGAACTGTGCAGGGTCCTGTGATGGTTATTGCTTACTTTTTGAAATTATTGCTTACTTTTGATATCTTTTCATAAGCTATTTCTGGCATTCAAATTAAGAAACTGTGAATTAATATTCTATAGTGATCTACGAACTATACTGGTTTGATAGCTAACTTATAAAAACCAGGTAGAACAGCATATTCTTTTCAAGTATAGGAATTTTGGCCCTCCAGAGGCCATTAGAAAATA------------------CATTAGAATATTTTTGGATGCC-AAAACCGCAGCTTAGAAAGAACTTTTAG

a score=23561
s chr3            92945021 574 + 160039680 GATGCATGCTGAACTTTGTGATAATCTAAAGAATGCGATCTTCAAATTGATGTGTACCTCTATGTGTCTGTTTATTTCATAGAAATCTTGACTATGAAAGTCAGATAGGTCATGGAAGGCAGGCATTTGACAGACTAAGTCAGTAGACACTCAACAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCA-GCATCCCAGGGGTCAA-GAAAAGCC
s HiC_scaffold_1 138681765 546 - 233722169 GATCCATGCTGCATCTTG-GAGGACCTTA------------TCGAAGTG-TCTGTGCC-CTATGTTAGCATTTCCTTTTCATAGATCTTGGCTTACAAAGCAGCTTGGGT----GAGGGAGGGCATTTGACAAA---AACGAAGAGACGCTGTGCTGAAGTTTCTGGGT-TcaaatgtttgcattttgtttcaaGGTACAATTCCCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCCTC------------CCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGAGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTACTGACTTGGATCTTCATGATGCG----GATATTTCAGAGAAAGCAGGAATCCTAGGAGCCAATGAGAAGCC

a score=5255
s chr3            92945165 478 + 160039680 AGACACTCAACAGAAGCTTCT-CCCTATCACGTTTCTATCCTACTCTTCTAGGTC-CAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGG------CTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACAGTCTGGAGGAATCAGCATCCCAGGGGTCAAGAAAAGCCCAGCTAGTCTTGTTTTATCTGATCCTGGAGAGTCTTCTCTGCCTGTCT
s HiC_scaffold_1 138687682 395 - 233722169 AGACACTGACCAGAGGCTTCTGCATTATCAAGCTTGTCTGATTCTCTCTAAAGTCTCTGTCCTCTACAGGGATTCCCTGCCAGCAAAACCAGCAAAATT-----CTGGTACACAAGTATC----TCAATAAAACCTACCTCAGTATCCTCCA----------CACATTCATTCCC-------------------------AGCTCCAGGGACCACAG------CAGCT-GGGGGCAGGTGATAACTGCTACTTGAG---------------GGTCCATCTTTTCAG----AGCATCCCAGAGTCCTG--GCGGATGTAGTTGCGAGCTACCTGGG--CTCCAGGTGCTGCCATGGCTCTGGAGTCTGCTGTTGACCTGGGCCGTGAGACTGAGATGAGCAGTTTTAGAGAAATCAGAAACTCAAAAACCAAGGA------------------TTAACCTCGTTCTGAAGTATCCTCCCAGCTTCCCT

a score=17932
s chr3            92945179 464 + 160039680 AGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACA---GTCTGGAGGAATCAGCATCCCAGGGGTCAAGAAAAGCCC--AGCTAGTCTTGTTTTATCTGATCCTGGAGAGTCTTCTCTGCCTGTCT
s HiC_scaffold_1 138457840 457 - 233722169 AGTTTCTCTCTG---AGCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGACAACCCCTTCTCAAATGCCCCTC------------CCCCAAGTGCCCCCAGAAGAGcccagcactgtgcctgcctgctACCTCCTCCTGTTCTGCCCCCACATCTGTGGGCTGCAGTGGCCTCAGCTGAAGCTCTGAGGGAGGCTGCTGCCCGTGCCACCACAGACATCACAGGTCTCATAAGTGCAGGCTGCGGAGTTCAGACTCCTGTGATAGTGACAGTGGTTGGCAGTGTGGGGGCTCTGGCTGTGGTCACAACTCTGGGGA-TGCAGCTGACCTAGATC-TGATGCTAAGTTGAGAGATTTGTTAGGAAAGAAGAGACTCCAATGACCAAGGGAAAGCCTCAAGCTGGCA-------ATCCTATCCCAGGGATCCTAGGCTCTCTTTCT

a score=15900
s chr3            92945216 341 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCC------AGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACA
s HiC_scaffold_1 138548583 325 - 233722169 gtcAAATTCTCTGACTGTGTGTCCTACCAACACAACTAGCAACAGTGCCAGTCCCCTCCC-------------------------CCAAGTCCCCCCAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgcttccagCTCTGGGGGCTGTGGTGGCCTCTGTTGCAGCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGATGCTGCAGGTCCCACAGATGCAGGCTGTGGAGCTTGGACTCCTGTGATGGTGACAGTGGTAGGCAGTCTGGGTGCTCTGGTGGTAGCCACAGTGCTGAGAGTTTTTGCTAATATGGACCATGGTA-TAAAGCAAAGCA

a score=16711
s chr3            92945216 341 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCCTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGATGCTGAGACAAGACA
s HiC_scaffold_1 138610633 325 - 233722169 gtcAAATTCTCTGACTGCGTGTCCTGCCAACATAACTAGCAGCAGTGCCAGTCCCCTCCC-------------------------CAACGTGCCCCCAGAAGAGCCCAGCATAGTGTctgcctgctgcctcctcctgctctgctcccagCCCTGGGGGCTGCGGTGGCCTCAGCTCCAGCCCTGAGGGAGGCTACTGCCTGAGCCACCACAGGTGTTGCAGGTCCCACAGGTGCAGGCTGTGGAGCTTGGACTCTTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGTGGAAGCCACAGTGCTGAGAGTTGTTGCTGATATGGGCCATGGTA-TAAAGCAAAACA

a score=11314
s chr3            92945228 337 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCCC----------------TCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA-----TGCTGAGACAA--GACAGTCTGGAG
s HiC_scaffold_1 138513744 358 - 233722169 CCAACATGTCCTACCAGCAAAAGCAGTAGCATTTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGCTCCAAAGTACCCACCCCAGTGCCCAGCGTCATGCCCTCCTTGGGTCTCTTCCTGCTGTGACTCCACCTCTGGGAGCTGCTGTCGCTCCAGTTCTGGGGGTAGTGGTTGCTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTACTGAGAAAATGGATGATCCAGAG

a score=13220
s chr3            92945229 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------------------CTCTccaaagtgctccccaaagtgccccccaaagAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138523034 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCTAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGATTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=14147
s chr3            92945229 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------CTCTccaaagtgctccccaaagtgccccccaaag------------AGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138583866 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCAGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCGCAGTCTCTTCCACCACCGCCACAGGCACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGA

a score=14077
s chr3            92945229 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------CTCTccaaagtgctccccaaagtgccccccaa------------agAGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138572592 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCATCACCGACACAGGCACCAG-GCTCC--------TGACTGTTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=13419
s chr3            92945229 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTCC---------CTCTccaaagtgctccccaaagtgccccccaaag------------AGCACAGCACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG-GTC-----CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAGCATGA
s HiC_scaffold_1 138506226 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTGTCTTCCACCACTGCCACAGGCAACAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGA

a score=3855
s chr3            92945231 51 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGTC
s HiC_scaffold_1 138261810 51 - 233722169 AAATGTCCTTTCAGCAGAACCAGCAGCAGTGCCAACCTCCTCCCAAGTGCC

a score=10690
s chr3            92948271 837 + 160039680 AGCTAATTTAAATGCACCTT--GCATGCTGTGACTACAT------TTATGTCAACAGCAC------TGTCGTGTGTA-------CACAAATCACTGCTTCATTTATTTGCTAT------------------TAATCAGCTGATTCC--CTCTCCGTA---------------TCCCAACCCAAATGAGTTAGCTCCTTCTGTGACCTATGTGTGAAGCTTGGAGAAATACAAAAA-----GGTAGACTCACAAG---TTGTTTAGGAGATGTTGATTAGGTCTTTATA--TAATATTTGAATT-ACTTTGTACTTTTCACCACACAGTAGCATTGTCTATCCAGGAACACCCATACCTTAAGACAGTCATCACCCATAGAGATCAAGATTTAAAGCCAGGAACACTGGGCTCCTGGTTGAGCATTTTTACTGAGAG-----AGTTATTCTCCTCT-TACTATACATGAAACTTTACTTTCAGATATGAGTTATGTGTGGAGAGTCAGCTCTCT---------AGAGACCTCACTGCTTTCTGGGTTTCATGTATTACTCTC-AGTG-ACCC----AGAAACAGCTACCCTCCCCCCCCCAGCCCCCACACCTTTGGAGGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCA--TTCCCAACACTGTCATCTCTGACAGGCTACTGACCTCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAATACTGATACCTGTGAACTCTTACCTAAACCTGATTACTCCT--CAGGTGTTCACCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACTGTCTGTCCCGTTACACAGCAAGTTATACAACCAGGACTGCACCATACCCATTTGTTGCTAGATGCGTTTATCACCTCATGGGT
s HiC_scaffold_1 138555567 862 - 233722169 AGCTAATTTAAGTGCAACTTCTACACACAATTTCTACACAGAATGCAATTTCACCATCATATCAATTGTATTATGTAAGAAATCTAGAAATCGCTGGCACATCTATCTAGTATCTATTATGATTTTCCTTCTAATTAAAAGAGTCCATCTTTCAGCAAGATTTATGCTGCCTCCCCAGGCTCAGTGACTCAGCGCTTTCTCTGACTTTTTcatgaa------agatatttaaaaacacatgaaagGCTTTTAAGGCATGGCTTATCAGATGTAGGTTAGACTTTGACTCTTAACATCAAGGTTGACTGTGT---TGTCATTACATTGTACCCTC-CCAATCCTTAAACTCCTCTAACTTAGGATAGACATCACctgaggaaa-caggaagaaaatttggGCGAATTCAACTCCTGATCCAGTGTCTGTACAGAGTGTTTTGAGCTGCTCCCTTCAATGCTCTGC------CCTCACCC-CAGACTTCAGCTCTAT--------TTACCTCCCTCCTTTCGGCAGGGATATCGTTGCCTACAGCATTTTATGGATCCCTCTCCAGTGTACCCCTGGAGAAGCAGCTAA------------------------TATAAGGAGGTGGGGTGTCTCACCCCTGTCC-----CTGCAGTTTCCCAG---TGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAACATCTCAATACATGAGGT-ACGTAGGACTGATACCCAGTAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGcatgattgcttcattgtctaccCTGTTACCCACC--------TAAGCAAGATCATATTGAATTCAATTATGATTAGACACATTTATGGCCTTACAGAT

a score=9584
s chr3            92948387 649 + 160039680 TCCCAACCCAAATGAGTTAGCTCCTTCTGTGACCTATGTGTGAAGCTTGGAGAAATACAAAAA-----GGTAGACTCACAAG---TTGTTTAGGAGATGTTGATTAGGTCTTTA-TATAATATTTGAATT-ACTTTGTACTTTTCACCACACAGTAGCATTGTCTATCCAGGAACACCCATACCTTAAGACAGTCATCACCCATAGAGATCAAGATTTAAAGCCAGGAACACTGGGCTCCTGGTTGAGCATTTTTACTGAGAG-----AGTTATTCTCCTCT-TACTATACATGAAACTTTACTTTCAGATATGAGTTATGTGTGGAGAGTCAGCTCTCT---------AGAGACCTCACTGCTTTCTGGGTTTCATGTATTACTCTC-AGTGACCCAGAAACAGCTACCCTCCCCCCCCCAGCCCCCACACCTTTGGAGGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCATTCCCAACACTGTCATCTCTGACAGGCTACTGACCTCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAATACTGATACCTGTGAACTCTTACCTAAACCTGATTACTCCT--CAGGTGTTCACCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACTGTCTGTCCCGT
s HiC_scaffold_1 138489669 625 - 233722169 TCCCAGGCCCAGTGGCTCAGCGCTTTCTCTGACTTTTTcatgaa------agatatttaaaaacacatgaaagGCTTTTGAGGCATGGCTTATCAGATGTAGGTTAGACTTTGACTCTAACATCAAGGTTGACTGTGT---TCTCATTACATTGTACCCTCCCAAATCTCA-AACACCTCTAACTTAGGATAGACATCACctgaggaaa-caggaagaaaatttggGAGCATTCAACTCCTGATCCAGTGTCTGTACAGAGTGTTTTGAGCTGCTCCCTTCTATGCTCTGC------CCTCACCC-CAGACTTCAGCTCTAT--------TTACCTCCCTCCTTGCTGCAGGGATATTGTTGCCTACAGCATTTTATGGGTCCCTCTCCAGTG-------------------TACCCCTGGAGCCGCTGCTAATATAAGGAGGTGG-GTGTCTCATCCC-CTGTCCCTGCAGCTTCCG----ACTGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAGCATTTCAACACACGAGGT-ACATAGGACTGATACCCAGCAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGCATGATTACTTCATTGTCTACTCTGT

a score=27393
s chr3            92957219 1208 + 160039680 ATCAAAATTTCCTGGCTCTCTACTGATGGTAATTGTAGTAGGAACATGGAA--------AGATGATGAATGGATGATCCTGGCTCTGTCATCCCCTCTGT-TGTGAAAGCATCAGCATGCTTGGGCTGTTCATCACACATC-TACCAAGGATAAAAGGGCTGCTGCCCTGGATCATTCAGCCACAGCTTCTTCTAC-ACAGACTTCTTC----TCCTGACTTTGCGGTATCTGGTGAGTACCTAACTAGGGGAAGAGCCTCAGCTAAAAAGGGGTAGAGATGACAAGC-TGAACTTGACCAAGGTGAAAGAAGCAATGGTATCAAGAGTGAAGGCAGCAGGAAGTGGACCTCACAGGG-ACCAAGAGACAGGGAGGGAAATGGACAAGAGCCTCTGTGGGTACATCAGGAA----CTGTGACACACCAGAATCTTAGATCTCAGCATTGCCTCTGCCTCCTCTCCACTAAGAGCTATTCATCAACCCAGAGGATTCGCCATAGGGTTATTATCCCAT--------TACCTTTATTTGCTACTTTTAGCAGAGAGA----------CACTTAGAAGTATCAATATCCCTTCCTGCAAGTAGGGCTAAAAGGAAGACAATGTTTTACAGGTCAAAATCAGTTCCCCTTTGTCTTTGTAAAAAGATCATTGTTCTGAATCCATTTACTAGGGATGCATGCTGACCTATCTGATAGTCTTGAGAATGCTGTGTTCACATAGATGTATACTTCCACGTTGCTGTTTATTTCATAGAGATCTTGGCTTAGGAAGCAGATAGG--TCAGGGAAAGCATG-TGTTTGACAGTCTAAGTCAGTAGACATTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCT-AGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCCAGG
s HiC_scaffold_1 138695249 1099 - 233722169 ATGAAGATTTACTGATTCTCTCATGCCAGTTGTCATGGCAAGCATGAGGAAGAGGTTGGAGACTTGGGATGGGACTGCTGGGCTCCGTCACTTCCACTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCATCCAGCAGGGCACAGATGCCCTGTCAGGAGAGCGTGG-GAAGATAAGCACAGACTACAGAGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGCAGAACCTGGAGGGCAGCAGGAGGCAGGG---GATGGGGACAGGGG--------------GCAGGGAAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGC--CCCCTAGCTCCTTCC---TGAGAGACACACAGGGGCCCAGAGAGCTCTGCA-GGAGCTACTCTCCAATGCTGGGAATTCACTTCACTGTTTCTGGGAATACAGAGGACTCCAAGTCCAGTTAGAGCAGTCACCTGCTCTTCC-------ACAGTAAAGTGGAAGGAAATGTATTTCCATTCAA--------------------TTTAAAGGga----------------------------------------------------------------------cataaattt-tcctttttcctggctACTTA--------------------AGGAAGCAGCTAGAGTTGGGGGCAAGGATGGTATAAGATCATCCCAG--AGACACCATTGGCCTAAAGCTTTTCC--ACTGAGCTTTTTCCTTGCTCTCCCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTTCCCCCAAATGCCCC---AAG---------AAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGAACTTAGCAGCGGTGATGAGA-----AGTTTTAAAGGAGACAAAGTCCAAGG

a score=24033
s chr3            92957841 604 + 160039680 ATCATTGTTCTGAATCCATTTACT-AGGGATGCATGCTGACCTATCTGATAGTCTTGAGAATGCTGTGTTCACATAGATGTATACTTCC-ACGTTGCTGTTTATTTCATAGAGATCTTGGCTTAGGAAGCAGAT-AGGTCAGGGAAAGCATGTGTTTGACAGTCTAAGTCAGTAGACATTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCC-AGGGGTC-ATGAAAAGCCCAAC
s HiC_scaffold_1 138681729 586 - 233722169 ATCCTTGTTCTCA--CTGTCTAGTCAGAGGTCCACACTGATCCATGCTGCATCTTGGAGGAC------CTTATCGAAGTGTCTGTGCCCTATGTTAGCATTTCCTTTTCATAGATCTTGGCTTACAAAGCAGCTTGGGTGAGGGAGGGCAT----TTGACAA---AAACGAAGAGACGCTGTGCTGAAGTTTCTGGGT-TcaaatgtttgcattttgtttcaaGGTACAATTCCCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGAGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTACTGACTTGGATCTTCATGATGCG----GATATTTCAGAGAAAGCAGGAATCCTAGGAGCCAATGAGAAGCCTCAC

a score=25320
s chr3            92957845 1072 + 160039680 TTGTTCTGAATCCATTTA-CTAGGGATGCATGCTGACCTATCTGATAGTCTTGAGAATGCTGTGTTCACATAGATGTATACT-TCCACGTTGCTGTTTATTTCATAGAGATCTTGGCTTAGGAAGCAGATAGGTCAGGGAAAGCATGTGTTTGACAGTCTAAGTCAGTAGACATTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGA-AACAGCATTCCAGGGGTCATGAAAAGCCCAACTAGTCTTGTTTTGTCTGATCCTGGAGAACCTT-CTCTGCCTGTCTGATGCTCACTGACATT----------------GTTCCCATCTTTCCTGTGGAATGCATGTGCCCATCCTTGCTTTTGACT-------AGAATAAAGATT--CTATCCCCACTACACTGGTGTGCCACTGTCATTTTTCCCTATCCCTCCACAGGTTGCAGGTATGTGTTCTTCCCCTCTAACTCACAATTACAGCACTCCATGATCCACAG-CGTAAAAAAAAAAAAAATCAATCATAGCTCTATACAGG---AAAAGTTTAGGGGTCTGTCAGACATGTTAATGGTCACTTTGGTTTAAGCAGCAGGGGAGGAAATGGGCAGGACTGGGGTCTCTAACAAGGAATGGTATGTCCTATGACATGTGGAGTGTAT-----TTCATCTCACAGTAGAAATGTAA------------------GCCTACTGTGAGGAGATACCATTTGCTTTG-----------ATGAGTGATTTCTAGCATCTAATTTAAAAA
s HiC_scaffold_1 138485928 1079 - 233722169 TTGTTCTGA--CTGTCTAGCCAGAGCTCCACACTGATCCATGTTGCATCTTGGAGAACCTTAT---CAAGTGCCTGTGCCCTCTCTAGGTTAGCAATTCCTTTTCACAGATCTTCGCTTACAAAGAAGCTTGGATGAGGGAAGTGCAT---TGAAAAACTCAATGAA-AGACACTGTGCTCAAGAGTCTGGGT-TCAAATATCTGCATTTTGTTTCAAGGTAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCTTCCCAAGT----TTCCCTA--------CCCCAAGTGCCCCCAGAAGAGCCCAGCACAatatctgcctgctgcttcctCCTGCTCTGTTCCCAACTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCCGCCTGAGCCACCACAGGCACCGCAGGTCCCACTAGTGCAGGCTGTGGAGATCAGACTCCTGTGATGGTGACAGTGGTCTGCAG------GACTCTGGCTGTGGACACAGCTCTGGGGGCTGCTGCTGACCTGTAATCTGATGCTGAGACAAGAGATTTCAGAGGCTAGGAGAATCCCAAGAGCCAAGGAA---CAGCTTCATCTTGATGCGTCT--TTCCAATGAATGTTGCCCTGGCCATTGAATTCTCACCGCCCTTTCTGTCTGTGTAAATATCTCACACTACTGCTGAGGATTGTATA----CTTCATTGTGCCTCACTCAGTCAAGAAATAAAAGCTTGCTGTTTCTTTACCACTGGCATCTTATGGTCATTTCACCTTGACTCTTACCAGGTGGCTGGTCTGTGCCCTTGTCCTCTGCCCCTCA---------------GATCTGCTGCCGCCACAAAGAGGGTGCAGAGTCATTGCtctagacaagaaaaaaaattggacaCTTGGTCCATTCTTTTCATGGTGAATTTG--TGAGGCAGCATGGGAG---------AGGACTATGTCCTCTGAGGAAGGATGGCTTTTC------CAAGCAAAGAGCATGGCTGTTCATCTCATAGGAACTGTGCAGGGTCCTGTGATGGTTATTGCTTACTTTTTGAAATTATTGCTTACTTTTGATATCTTTTCATAAGCTATTTCTGGCATTCAAATTAAGAA

a score=4459
s chr3            92958011 478 + 160039680 AGACATTCACCAGAAGCTTCT-CCCTATCACGTTTCTATCCTACTCTTCTAGGTC-CAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAGGGAGG------CTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCCAGGGGTCATGAAAAGCCCAACTAGTCTTGTTTTGTCTGATCCTGGAGAACCTTCTCTGCCTGTCT
s HiC_scaffold_1 138687682 395 - 233722169 AGACACTGACCAGAGGCTTCTGCATTATCAAGCTTGTCTGATTCTCTCTAAAGTCTCTGTCCTCTACAGGGATTCCCTGCCAGCAAAACCAG----------------------------------CAAAATTCT---------GGTACACAAGTATCTCAATAAAACCTACCTCAGTATCCTCCACACATT-CATTCCCAGCTCCAGGGACCACAG------CAGCT-GGGGGCAGGTGATAACTGCTACTTGAG---------------GGTCCATCTTTTCAG----AGCATCCCAGAGTCCTG--GCGGATGTAGTTGCGAGCTACCTGGG--CTCCAGGTGCTGCCATGGCTCTGGAGTCTGCTGTTGACCTGGGCCGTGAGACTGAGATGAGCAGTTTTAGAGAAATCAGAAACTCAAAAACCAAG--------GATTAACCTCGTT----------CTGAAGTATCCTCCCAGCTTCCCT

a score=16661
s chr3            92958013 390 + 160039680 ACATTCACCAGAAGCTTCT-------------CCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCA
s HiC_scaffold_1 138610580 378 - 233722169 ACATTGGCCTGAAGCCTCTGCATGGACATGTACTTTgtgttggttttatttta---------gtcAAATTCTCTGACTGCGTGTCCTGCCAACATAACTAGCAGCAGTGCCAGTCCCCTCCC-------------------------CAACGTGCCCCCAGAAGAGCCCAGCATAGTGTctgcctgctgcctcctcctgctctgctcccagCCCTGGGGGCTGCGGTGGCCTCAGCTCCAGCCCTGAGGGAGGCTACTGCCTGAGCCACCACAGGTGTTGCAGGTCCCACAGGTGCAGGCTGTGGAGCTTGGACTCTTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGTGGAAGCCACAGTGCTGAGAGTTGTTGCTGATATGGGCCATGGTA-TAAAGCAAAACA

a score=18061
s chr3            92958025 417 + 160039680 AGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCA---GTCTGGAGGAAACAGCATTCCAGGGGTCATGAAAAGCCC
s HiC_scaffold_1 138457840 414 - 233722169 AGTTTCTCTCTG---AGCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGACAACCCCTTCTCAAATGCCC------------CTCCCCCAAGTGCCCCCAGAAGAGcccagcactgtgcctgcctgctACCTCCTCCTGTTCTGCCCCCACATCTGTGGGCTGCAGTGGCCTCAGCTGAAGCTCTGAGGGAGGCTGCTGCCCGTGCCACCACAGACATCACAGGTCTCATAAGTGCAGGCTGCGGAGTTCAGACTCCTGTGATAGTGACAGTGGTTGGCAGTGTGGGGGCTCTGGCTGTGGTCACAACTCTGGGGA-TGCAGCTGACCTAGATC-TGATGCTAAGTTGAGAGATTTGTTAGGAAAGAAGAG-ACTCCAATGACCAAGGGAAAGCC

a score=16040
s chr3            92958062 357 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCC------AGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGC
s HiC_scaffold_1 138548583 341 - 233722169 gtcAAATTCTCTGACTGTGTGTCCTACCAACACAACTAGCAACAGTGCCAGTCCCCTCCC-------------------------CCAAGTCCCCCCAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgcttccagCTCTGGGGGCTGTGGTGGCCTCTGTTGCAGCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGATGCTGCAGGTCCCACAGATGCAGGCTGTGGAGCTTGGACTCCTGTGATGGTGACAGTGGTAGGCAGTCTGGGTGCTCTGGTGGTAGCCACAGTGCTGAGAGTTTTTGCTAATATGGACCATGGTA-TAAAGCAAAGCATCTAAGAAAATAAAGC

a score=13463
s chr3            92958075 353 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGATGCTGAGACAAGGCAGTCTGGAGGAAACAGCATTCCAGGG
s HiC_scaffold_1 138523034 365 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCTAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGATTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA---------AGAGCTCTTGAAATGACCCAGCGTTCTAGAG

a score=14252
s chr3            92958075 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaaag------------AGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA
s HiC_scaffold_1 138583866 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCAGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCGCAGTCTCTTCCACCACCGCCACAGGCACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGA

a score=14182
s chr3            92958075 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaa------------agAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA
s HiC_scaffold_1 138572592 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCATCACCGACACAGGCACCAG-GCTCC--------TGACTGTTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGA

a score=13524
s chr3            92958075 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaaag------------AGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAACTCTGGGGGCTGCAGTGTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG-GTC-----CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCTGGAACATGA
s HiC_scaffold_1 138506226 334 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTGTCTTCCACCACTGCCACAGGCAACAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGA

a score=3986
s chr3            92958077 51 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCC
s HiC_scaffold_1 138261810 51 - 233722169 AAATGTCCTTTCAGCAGAACCAGCAGCAGTGCCAACCTCCTCCCAAGTGCC

a score=10227
s chr3            92961135 751 + 160039680 CAAAGCTAATTTAAATGCACCTT-----------------------------------GCAGGGTGTGAATGCATTATGTCAATAGCACT--GTCATATGTACACAAATCACTGCTTAATTTATTTGTTTTTAGTCAGCTTATTCCTTCT----------------------------------CTG--TATCCCAATCCAAATGACTTAGCTCCTTCTATGACCTAGGTCTGAAG----CTTAGAGATA--TGCAAAGTAGTAGACTCAAAATTCATTGAGAAGATGTTGTTTGGATAGTGA-TCTGACATCTGAACTAAGTTGTGCTTTCACCACACAGTAGCCTTGTCTCTCCCGGAACACCCATAGCTTCAGACAGTCATCATCCATGCAGATCAGGATGCAAAGCCAGGAATACTGGGCTCCTGAACCAGGGTTTTTACTGAGAGTATTAGTCTGCTAT-TACTATACATGAAATTTTGCTCTCA-----GATATGAGTTCTATGTGCATTGTCTGCTCTCT--AGGGACCTCTCT--CCTCTGTGTTTCATGCATTACTCTCAGTGCCTGAGAACAGGCTGCCCTC----CCCCCTCTTTGGTAGGGTGG--AGTTTCTCATCCCACTCTTCCTTCTGCATTCCCAACACTGTCATCTCTGACAGGCTACTGACCTCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAATACTGATACCTGTGAACTCTTACCTAAAACTGATTACTCCT--AAGGTGTTCATCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACTGTCTGTCCCGT
s HiC_scaffold_1 138489478 816 - 233722169 CACAGCTAATTTAAGTGCAACTTCTACACACAATTTCCACAAAGAATGCAATTTCTACACAGAATGCAATTTCATCATATCAATTGTATTATGTAAGAAATCTAGAAATCGCTGGCACATCTATCTAGTATCTATTATGATTTTCCTTCTAATTAAAGGAGTCCATCTTTCAGCAAAATTTATGCTGGCTTTCCCAGGCCCAGTGGCTCAGCGCTTTCTCTGACTTTTTcatgaaagatatttaaaaacacatgaaagGCTTTTGAGGCATGGCTTATC----AGATGTAGGTTAGACTTTGACTCTAACATCAAGGTTGA-CTGTGTTCTCATTACATTGTACCCTCCCAAATCTCA-AACACCTCTAACTTAGGATAGACATCACctgaggaaa-caggaagaaaatttggGAGCATTCAACTCCTGATCCAGTGTCTGTACAGAGTGTTTTGAGCTGCTCCCTTCTATGC-------TCTGCCCTCACCCCAGACTTCAGCTCTATTTACCTC-CCTCCTTGCTGCAGGGATATTGTTGCCTACAGCATTTTATGGGTCCCTCTC------------CAGTGTACCCCTGGAGCCGCTGCTAATATAAGGAGGTGGGTGTCTCATCCC-CTGTCCCTGCAGCTTCCG----ACTGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAGCATTTCAACACACGAGGT-ACATAGGACTGATACCCAGCAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGCATGATTACTTCATTGTCTACTCTGT

a score=11422
s chr3            92961135 889 + 160039680 CAAAGCTAATTTAAATGCACCTT-----------------GCAGGGTGTGAATGCA---TTATGTCAATAGCACT--GTCATATGTACACAAATCACTGCTTAATTTATTTGTTTTTAGTCAGCTTATTCCTTCT----------------------------------CTGTATCCC-AATCCAAATGACTTAGCTCCTTCTATGACCTAGGTCTGAAGCTTAGAGATATGCAAAG-----TAGTAGACTCAAAATTCATTG---AGAAGATGTTGTTTGGATAGTGATC--TGACATCTGAACTAAGTTGTGCTTTCACCACACAGTAGCCTTGTCTCTCCCGGAACACCCATAGCTTCAGACAGTCATCATCCATGCAGATCAGGATGCAAAGCCAGGAATACTGGGCTCCTGAACCAGGGTTTTTACTGAGAGTATTAGTCTGCTATTACTATACATGAAATTTTGCTCTCA-----GATATGAGTTCTATGTGCATTGTCTGCTCTC--TAGGGACCTCTCT--CCTCTGTGTTTCATGCATTACTCTC-AGTG-----CCTGAGAACAGGCTGCCCTCCCCCCTCTTTGGTAGGGTGGAGTTTCTCATCCCACTCTTCCTTCTGCA--TTCCCAACACTGTCATCTCTGACAGGCTACTGACCTCATCTCAGGCACTCCCAAGTGACATTAAATGACAACATCCCAACACATGAGGCAACAAAATACTGATACCTGTGAACTCTTACCTAAAACTGATTACTCCT--AAGGTGTTCATCTGTGAGCTTGTCACTTGA---TGCAGTGACTTATTTACCTGACTGTCTGTCCCGTTACACAGCAAGTTATACAATCAGGACTATGACATATGCATTTGTTGTTAGATGTGTTTATCACCTCATGGGTTAAACATCTACCACAGTAATATGTTATGTAATATCAGTTTGATTTCTGTTTaaatatagaacacta
s HiC_scaffold_1 138555564 929 - 233722169 CACAGCTAATTTAAGTGCAACTTCTACACACAATTTCTACACAGAATGCAATTTCACCATCATATCAATTGTATTATGTAAGAAATCTAGAAATCGCTGGCACATCTATCTAGTATCTATTATGATTTTCCTTCTAATTAAAAGAGTCCATCTTTCAGCAAGATTTATGCTGCCTCCCCAGGCTCAGTGACTCAGCGCTTTCTCTGACTTTTTcatgaa------agatatttaaaaacacatgaaagGCTTTTAAGGCATGGCTTATCAGATGTAGGTTAGACTTTGACTCTTAACATCAAGGTTGA-CTGTGTTGTCATTACATTGTACCCTC-CCAATCCTTAAACTCCTCTAACTTAGGATAGACATCACctgaggaaa-caggaagaaaatttggGCGAATTCAACTCCTGATCCAGTGTCTGTACAGAGTGTTTTGAGCTGCTCCCTTCA------ATGCTCTGCCCTCACCCCAGACTTCAGCTCTATTTACCTC-CCTCCTTTCGGCAGGGATATCGTTGCCTACAGCATTTTATGGATCCCTCTCCAGTGTACCCCTGGAGAAGCAGCTAA-----------TATAAGGAGGTGGGGTGTCTCACCCCTGTCC-----CTGCAGTTTCCCAG---TGTCATCAATGATTGCCTGATGACCTTACCACCATCACTCCTAAGTGATACCAAATGGCAACATCTCAATACATGAGGT-ACGTAGGACTGATACCCAGTAGCTCCTGCCTAAGCCTGCAGACTTCTCACACATGTTCAT---TACTCTTCTCACCCTGGCTCATAGTTGcatgattgcttcattgtctaccCTGTTACCCACC--------TAAGCAAGATCATATTGAATTCAATTATGATTAGACACATTTATGGCCTTACAGA-TGTGTGTCTACTGCAGTGCTGT-TTCCACAGTATCTAATAGTTTtctaaacaatgaaagaaaaata

a score=30915
s chr3            92966887 1336 + 160039680 AGAGAGCCATCAAAATTTCCTGGTTCTCTACTG---------ATGGTAATTGT-AGTAGGAGCACAGAAATATGAATGGATGATCCTG----GCTCTGTCAACTCC-CTTGTTGTGAAAGCATCAGCATGCTTGGGCTGTGCATCACACACCTGCCA-AGGATAAAAGGGCTGCTGCCCTGGATCATTCAGCCACAGCTTCTTCA-TCACAGTATTCTCC-------TGCTTTTGCAGTATCTGGTGAGTACCTAACTAGGGACAGGGCCTCCGCTAAGAAGGTGTTGAGATGACAAGC-TAGATGTGACTGGGATGAAAGAAGCAGGGGTGTCTAGTATGGAGAGAATAGGAAG-AGCACCTGCCAGGGGGCAAGAAGACAGGGAGAACACAGACAGGAGCCTCTCTAGGTATATCAGGATCTGTGACACACCAGAGTCCTAGCTCTCAGCACTGCCTC-CACTCTGCTGAGAGGTTTGCATCACCCCAGAGGATTCTCAAAGGGTCATTTTCCCATTACCTGTATTTGCTACAGTTCATCAGAGAGCTACTTAGAAGTATCCACGTCTGCTTAATCCGGGTAAAAATGGAAGATAGTGTTGCAGGCAGAGAGATCAGCAACCCTTTGCCTTTGTAAAGCTCCTTGGTCTGATTGTATTTACTAGGGATGCATGCTGATCTATCTGATAGTCTTGAGAATGCTGTGCTCACATAGATGTATACTTCCACGTTGATGTTTATTTCATAGAGATCTTGGCTTTGAAAGCAGATCAGCAATAGGAGGCAGGCATTTGACAGACTAAGTCAGTAGACAC---TCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCT-AGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGAAAATTCAGCCCGTCTTTTCCA----TTCCCAGGGGC-----CCTGCT---------GACTTCTTCTATCCAGAGTTTCAACTTCCCTAGTAACTTCTCTTCCTGTCTGTTGTCTGGGACCCCAC--AGTCCTCATTCCCTGGTAGCT
s HiC_scaffold_1 138695241 1248 - 233722169 AGTAATCAATGAAGATTTACTGATTCTCTCATGCCAGTTGTCATGGCAAGCATGAGGAAGAGGTTGGAGACTTG---GGATGGGACTGCTGGGCTCCGTCACTTCCACTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCATCCAGCAGGGCACAGATGCCCTGTCAGGAGAGCGT-GGGAAGATAAGCACAGACTACAGAGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGCAGAACCTG---GAGGGCAGCAGGAGGCAGGGGATGGGGACAGGGGGC-----AGGGA-----AGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCCAATGCTGGGAATTCACTTCACTGTTTCTGGGA---ATACAGAGGACTCCAAGTC----------------------------------CAGTTAGAGCAGTCACCTGCTCTT--CCACAGTAAAG----TGGAAGGAAATGTATTT--------------CCATTCAATTTAAAGGg------------------acataaat-----tttcctttttcctggctACTTAA----------------GGAAGCAGCTAG--AGTTGGGGGCAAGGATGGTATAAGATCATCCCAGAGACACCATTGGCCTAAAGCTTTTCC--ACTGAGCTTTTTCCTTGCTCTCCCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTTCCCCCAAATGCCCC---AAG---------AAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGAACT-----TAGCAGCGGTGATGAGAAGTTTTAAAGGAGA---------CAAAGTCCAAGGACTGTTC--TCTGTCCCTTGCAGTTTTTTCCATATACTTCAATCTGCTTTAGCACTGAGATGTTTCTTGCGAAAGTTCTGAGTTCTCTGCAGG---CTCTTCCTGCCTGTTCTCTAGGAGCCCACAAAATACTCA--CCCTGGTATCT

a score=22776
s chr3            92967501 811 + 160039680 TCCTTGGTCTGATTGTATTTACTAGGGATGCATGCTGATCTATCTGATAGTCTTGAGAATGCTGTGCTCACATAGATGTATACT-TCCACGTTGATGTTTATTTCATAGAGATCTTGGCTTTGAAAGCAGATCAGCAATAGGAGGCAGGCATTTGACAGACTAAGTCAGTAGACACTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGC---GCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGAAAATTCAGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCTATCCAGAGTTTCAACTTCCCTAGTAACTTCTCTTCCTGTCTGTTGTCTGGGACCCCACAGTCCTCATTCCCTGGTAGCTTAGGACTTCATATGTC-CTATACAT-ATCCATTTCAAAAAT-AAAGCTGCTCGAACTGTAACTGCTGGAATCTCATGAATCATTTTATTCTG
s HiC_scaffold_1 138485925 765 - 233722169 TTCTTGTTCTGACTGT-CTAGCCAGAGCTCCACACTGATCCATGTTGCATCTTGGAGAACCTTAT---CAAGTGCCTGTGCCCTCTCTAGGTTAGCAATTCCTTTTCACAGATCTTCGCTTACAAAGAAGCTTGG--ATGAGGGAAGTGCATT-GAAAAACTCAATGAA-AGACACTGTGCTCAAGAGTCTGGGT-TCAAATATCTGCATTTTGTTTCAAGGTAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCTTCCCAAGT----TTCCCTA--------CCCCAAGTGCCCCCAGAAGAGCCCAGCACAatatctgcctgctgcttcctCCTGCTCTGTTCCCAACTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCCGCCTGAGCCACCACAGGCACCGCAGGTCCCACTAGTGCAGGCTGTGGAGATCAGACTCCTGTGATGGTGACAGTGGTCTGCAG------GACTCTGGCTGTGGACACAGCTCTGGGGGCTGCTGCTGACCTGTAATCTGATGCTGAGACAAGAGATTTCAGAGGCTAGGAGAATCCCAAGAGCCAAGGAA----CAGC--------TTCATCTTGATGCGTCTTTCCAATGAATGTTGCCCTGGCCATTGAATTCTC-----ACCGCCCTTTCTGTCTGT--GTAAATATCTCACACTACT------------GCTGAGGATTGTATACTTCATTGTGCCTCACTCAGTCAAGAAATAAAAGCTTGCTGTTTCTTTACCACTGGCATCTTATG-GTCATTTCACCTTG

a score=29043
s chr3            92967501 988 + 160039680 TCCTTGGTCTGATTGTATTTACTAGGGATGCATGCTGATCTATCTGATAGTCTTGAGAATGCTGTGCTCACATAGATGTATACTTCC-ACGTTGATGTTTATTTCATAGAGATCTTGGCTTTGAAAGCAGATCAGCAATAGGAGGCAGGCATTTGACAGACTAAGTCAGTAGACACTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCC---GGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGAAAATTCAGCCCGTC-------TTTTCCA---------TTCCCAGGGGCCCTG--CTGACTT-------------------CTTCTATCCAGAGTTTCAACTTCCCTAGTAACTTCTCTTCCTGTCTGTTGTCTGGGACCCCACAGTCCTCATTCCCTGGTAGCTTAGGACTTCATATGTCCTATACAT-ATCCATTTCAAAAATAAAGCTGCTCGAACTGTAACTGCTGG-AATCTCATGAATCATTTTATTCTGGGCCATGCTTGAAGCCCCAGAATCCTTTGCTCCTTGCCTATCACAACC-ATCTCT-TAGACAAATCCCTAGCTAGATATGCAATGAAAAAATATCTACTACCA---------CTCCTGCCTGTTTATGGAAGGGCTTCAGAGAGTCTTACTACAAGATAAGAGGAAGAAACAATGTG--GGTTGTTGGCT
s HiC_scaffold_1 138681730 994 - 233722169 TCCTTGTTCTCACTGT-CTAGTCAGAGGTCCACACTGATCCATGCTGCATCTTGGAGGAC------CTTATCGAAGTGTCTGTGCCCTATGTTAGCATTTCCTTTTCATAGATCTTGGCTTACAAAGCAGCTTGGGTGAGGGAGG---GCATTTGACAAA---AACGAAGAGACGCTGTGCTGAAGTTTCTGGGT-TcaaatgtttgcattttgtttcaaGGTACAATTCCCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGAGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTACTGACTTGGATCTTCATGATGCGGAT-------ATTTCAGAGAAAGCAGGAATCCTAGGAGCCAATGAGAAGCCTCACCTTCATGCACGCTTTCCAAAGGCATCCTTTCCAGATACCTTGCTCTGGCTCTCACAGGCTGGGCAGGGAGTTTCCATCCAGGATCCAAGCTCTCCCAGAAGC--CTGTTCCCTTCTGATGTC-ACCAGCTCACAGTACCCACTCC-----AGCTGAGAGTGCAGTAGCACCTGCCCCTGATCctatctaaaaataaagtttctcGTTCTGTTACCACTGGAAATTTTACTTGTCA-TTTATTCTGTCTCTC----------------TGCTCAGCTCTTTGGCAGGCACAACCGAGCTCGAGGGGCAGATTCTGAGTcatgcaccaaaaaaaaaaaaaaaaaaaaccagaaaatcatTTTCCCTCCATTTATGGAAGGGCTACAAAGAGTTTTATGTTGGAATTAGAACCAGAAA-AGTGTGCAGGTTGTTGGTT

a score=5584
s chr3            92967670 474 + 160039680 AGACACTCACCAGAAGCTTCT-CCCTATCACGTTTCTATCCTACTCTTCTAGGTC-CAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGGGAGG------CTGCTGCCTGAGCCACCACAGGCGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGGAGCCAAGGA--AAATTCAGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCT
s HiC_scaffold_1 138687682 408 - 233722169 AGACACTGACCAGAGGCTTCTGCATTATCAAGCTTGTCTGATTCTCTCTAAAGTCTCTGTCCTCTACAGGGATTCCCTGCCAGCAAAACCAG----------------------------------CAAAATTCT---------GGTACACAAGTATCTCAATAAAACCTACCTCAGTATCCTCCACACATT-CATTCCCAGCTCCAGGGACCACAG------CAGCT-GGGGGCAGGTGATAACTGCTACTTGAG---------------GGTCCATCTTTTCAG----AGCATCCCAGAGTCCTG--GCGGATGTAGTTGCGAGCTACCTGGG--CTCCAGGTGCTGCCATGGCTCTGGAGTCTGCTGTTGACCTGGGCCGTGAGACTGAGATGAGCAGTTTTAGAG-AAATCAGAAACTCAAAAACCAAGGATTAACCTCGTTCTGAAGTATCC--TCCCAGCTTCCCTACCAGTTTATCCT

a score=18552
s chr3            92967673 458 + 160039680 CACTCACCAGAAGCTTCTCCCTATCACGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCT-CAGGAGCCAAGGAAAA--TTCAGCCCGTCTTTTCCATTCCCAGGGGCCCT
s HiC_scaffold_1 138457829 455 - 233722169 CACTGGCTGTGAGTTTCTCTCTG---AGCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGACAACCCCTTCTCAAATGCCC------------CTCCCCCAAGTGCCCCCAGAAGAGcccagcactgtgcctgcctgctACCTCCTCCTGTTCTGCCCCCACATCTGTGGGCTGCAGTGGCCTCAGCTGAAGCTCTGAGGGAGGCTGCTGCCCGTGCCACCACAGACATCACAGGTCTCATAAGTGCAGGCTGCGGAGTTCAGACTCCTGTGATAGTGACAGTGGTTGGCAGTGTGGGGGCTCTGGCTGTGGTCACAACTCTGGGGA-TGCAGCTGACCTAGATCT-GATGCTAAGTTGAGAGATTTGTTAGGAAAGAAGAGACTCCAATGACCAAGGGAAAGCCTCAAGCTGGCAATCCTA-TCCCAGGGATCCT

a score=15932
s chr3            92967721 551 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCC------AGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGG-AGCCAAGGAAAATTC-----------AGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCTATCCAGAGTTTCAACTTCCCTAGTAACTTCTCTTCCTGTCTGTTGTCTGGGACCCCACAGTCCTCATTCC-CTGGTAGCTTAGGACTTCATATGTCC----TATACATATCCATTTCAAAAATAAAGCTGCTC
s HiC_scaffold_1 138548583 507 - 233722169 gtcAAATTCTCTGACTGTGTGTCCTACCAACACAACTAGCAACAGTGCCAGTCCCCTCCC-------------------------CCAAGTCCCCCCAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgcttccagCTCTGGGGGCTGTGGTGGCCTCTGTTGCAGCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGATGCTGCAGGTCCCACAGATGCAGGCTGTGGAGCTTGGACTCCTGTGATGGTGACAGTGGTAGGCAGTCTGGGTGCTCTGGTGGTAGCCACAGTGCTGAGAGTTTTTGCTAATATGGACCATGGTATAAAG-CAAAGCATCTAAGAAAATAAAG----CTCTGGTAGACAGAGACCAATCCTTACCTGGTAGACCTTTCTGTTCCATCTTTA------CTGTTGAGTT----------GATCCTTGAACATTTTAGTACCTTCCC-------------------------CAAGATGTATTCCATTGGTTCCTTGGAATTCTGTATTTCCCTGTCTTTCATGTCCCTCTGAAAAATAAAGCTGTTC

a score=16437
s chr3            92967721 551 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGGCGGAGACAAGGAATTTCAGAGAAAAAAAGAATCTCAGG-AGCCAAGGAAAATTC-----------AGCCCGTCTTTTCCATTCCCAGGGGCCCTGCTGACTTCTTCTATCCAGAGTTTCAACTTCCCTAGTAACTTCTCT----TCCTGTCTGTTGTCTGGGACCCCACAGTCCTCATTCCCTGGTAGCTTAGGACTTCATATGTCCTATACATATCCATTTCAAAAATAAAGCTGCTC
s HiC_scaffold_1 138610633 506 - 233722169 gtcAAATTCTCTGACTGCGTGTCCTGCCAACATAACTAGCAGCAGTGCCAGTCCCCTCCC-------------------------CAACGTGCCCCCAGAAGAGCCCAGCATAGTGTctgcctgctgcctcctcctgctctgctcccagCCCTGGGGGCTGCGGTGGCCTCAGCTCCAGCCCTGAGGGAGGCTACTGCCTGAGCCACCACAGGTGTTGCAGGTCCCACAGGTGCAGGCTGTGGAGCTTGGACTCTTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGTGGAAGCCACAGTGCTGAGAGTTGTTGCTGATATGGGCCATGGTATAAAG-CAAAACATCTAAG----AAAATAAATCTCTGGTAGATGGAGACCAATCCTTACCTGGTAGATCTTTCTGTTCCATCTTTA------CTGTTGAGTT----------GATCCTTGAACATTTTAGTACCTTCCCCAAGATGTATTCTGTTG----------------------TCCCTTGGAATTCAGTATTTCCC---TCTCTTTCATGTCCCTCTGAAAAATAAAGCTGTTC

a score=11362
s chr3            92967733 337 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCT----------------tccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG-----CGGAGACAAGGAAT--TTCAGAG
s HiC_scaffold_1 138513744 358 - 233722169 CCAACATGTCCTACCAGCAAAAGCAGTAGCATTTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGCTCCAAAGTACCCACCCCAGTGCCCAGCGTCATGCCCTCCTTGGGTCTCTTCCTGCTGTGACTCCACCTCTGGGAGCTGCTGTCGCTCCAGTTCTGGGGGTAGTGGTTGCTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTACTGAGAAAATGGATGATCCAGAG

a score=13262
s chr3            92967734 315 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG
s HiC_scaffold_1 138523034 336 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCTAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGATTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGAAG

a score=14057
s chr3            92967734 315 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaaag------------AGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG
s HiC_scaffold_1 138583866 336 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCAGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCGCAGTCTCTTCCACCACCGCCACAGGCACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGAAG

a score=13987
s chr3            92967734 315 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaa------------agAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG
s HiC_scaffold_1 138572592 336 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCATCACCGACACAGGCACCAG-GCTCC--------TGACTGTTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGAAG

a score=13329
s chr3            92967734 315 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaaag------------AGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG-GTC-----CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGTTCAGGCTGCAGCCACAGCTCTGGGGGCTGCTGCTGACCTGGATCCGGAGG
s HiC_scaffold_1 138506226 336 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTGTCTTCCACCACTGCCACAGGCAACAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGACCAGGAAG

a score=3986
s chr3            92967736 51 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCC
s HiC_scaffold_1 138261810 51 - 233722169 AAATGTCCTTTCAGCAGAACCAGCAGCAGTGCCAACCTCCTCCCAAGTGCC

a score=15752
s chr3            92985215 773 + 160039680 TTCTCTCTCAACCACTCTGCAGTTATCAACCCCACAATGAATGAACCTGAGTCAAGTTGAGACCTCCTAGAGATAAGACCTTCCTGAAAG------TGTATCCCTTAAGCACTGGCAATTAAC-----AAGTGGCATGCCTACCTTAGATCTGAATGGATGGTAGATGCCTCTAGTGTGTCAACTCTTCTCCACTTATTCAGGGAAAATAATA--TCTTAAATAACAATGTAAATAAAATAATTTTAGTGAGAAATTGAAGGAAGATGGAGTAGGTATTAAAGCCAAAGGACACTGACGAAGACAT--CTGCTTCCCAGAAG----TTTCCTTTTCCTTCTTCCCCATGCACTACAGGTGAGCAGCACACAGACATTCTTATCCTTCCACACCTAAATTCCTCTCCTCTTCTCTT---ACCTCTAAGATGCTCCCATCCTTAGAAGATTTGATTTCTTCTCTGACTTCCAAGAATTCATTATGTGCTCCCTCAACCCTTCCAGTAACATCCCAGTTTCCACTTTTAAGTAACT-----TTGTAGCACCTTCGTAAGGTCATTATAAAATCACTTTTCACAAACTACTTCTGGATGTCCTCTGTGGCCTAAAATCATAGAACTTACTGTTCTGAACTGATA----CTGAAGAAAGCAGATATGCTACAAGATG-CTCACTTGATATGATGATTGTTTTAGAGCCTT------------TTAAATGCCCTTTGTTCAGTACAGTGAAATAAAAGGCGAGTGTCTTTGTT----------------TTACT-CTGTTTTGTA-----------TCCCTTTGCTATGTTGACTGAAGTATAGTATCTCA
s HiC_scaffold_1 138689745 814 - 233722169 TTCCTTCATTCCCCCACTGTAACTTCTTATCTCATAATGA-TGACTCTGGATGCACTC-AGACCCTCTGGAGGTGATACCTTCCTCAAAGCCATAGTGTATTTCTGAAACACTGAATATCAGTCACTAAAGTGACCCACCTGCCCATACCCAGCACAGATCCTTTGTGTGCCTAATGTGTCAACATCACTCTTCACATTCAGGCTAGACAGgaagttttaagaaaatatg-atacataaGAATTACAGGTAAGAATTGGATAAAGGGATAAAAAGTGTTGAAACCAA--TAACTTGGCTAATAGTTTACGGCCTCCCAGagagttttttgttttcccatcttTCCTGTGGTTTACAGGTGAGTAGCACACAAATATTCCCGCCATTCTACACTCACCTTCCTCTCCTCTGCCTTTTGAACTTCTAAGTTGCTCCTATGCCTGGA------GACTCCCACCCTGACCTTCATGACCTTGTCATG---TCTCTGA---CTCACAGGAACTTCTCAGTTCCTACTTCCCAGCCACCATGCATTGTGACACTTTCACTCG--------------ACTTTTCTGAATCTGCTCTAGCCTGTCCTTTGTGACACGGAGTCATGGAATACACTGACTTGAACTAATACTAGCTAGAAAAGGCAGAAATTCTACAAAATGTCCCTCTTGTAAAAAAGATCTGCTTAGAGTCGTTTAGCCCATGCATTAAATGTTCCAAACTCAGTGTGATAAAACAAGAACcaattgttattgttgttgttgttcttgttgttgctgttgtttcctAGTCATTGTTTTCTCCTCTGTTATAGTGACTGAAAGCCAGTATTTCA

a score=16126
s chr3            92986544 598 + 160039680 AAAAGTAGATGGCTCT--TCAGCTGCCCCTTCCTCTGTTCCATCAGAATGTCACAGCTTCTTGTTATAGGATGCAACTGTTATGAGGATGAGAGGGACTGAGCTAAAGAA-----CTGAATTGTA---AGGAGAAGGAGATTTTTATG-TAGTTGACCCATTCTAGAATAGTGGGAAGAGTATGAAAATATACTCCAAAGACCTGATCCTGAGATCCTGTGCTGTTCCTTCCTGTAT-ACCAATTAGAATGACTAATACA----GTTCTGCCAAGATCCATTCAGCTAGATGAGTCACTGTATTTCCTCAACGTGTTGAAACCATATAGAGCAAAGATTCCACAGGATGAGACTCCTGGGGTTGGGGCCTTTGTACCCTAGGGAAGAATGAGCAGACACTCAGT-----GATATGAACTGTCATCACAGGATGGATGCTCTGCATGGCTCATCACAGGATGGATGCTCTGTAGAACACATGATCTCACGAAGAAAAGGAAGTAAGAAACAGGA-CAGTTCACCAAG----AGGTGAGACTAATGATCTCCATCTTCTGGT-GTCTCAAGAAGCTTCT-AGCTAGACAGTCTAGAAGAGGACTGGAAGAAAGCCCTTCAGACAACTC
s HiC_scaffold_1 138692118 566 - 233722169 AAAGGTACATGGCACTGTCTGTCTACTTCTCCCTCTTTTCCTAAGCAGTGTCTCAGCTGCTTGTCACAGAATGTAATTGTTACAGATATGGGAGGGACAGAACTGGAAAGGCACTTTGAACTGTATGCAAAGGGAGAAGAACTTTGTGCTTGTTGATTCATCCTAGATTTCTG------------ACATGCGCTCCAAGGAGCTAAACCTGAGATCCAGCACTGCTTGTTTTCTCATCACCAATTAGAATGACTAACTCATGAGATTCTTCCAGCCTTCATCCGTCTA------------TATTTCCTCAATGTTGTGAAACCATAGAATGCCAGGGTTCCTCAGTATGAGACTCCTGAAACTGACTCTCTTGTGCTTT-GGGATAAGTGAGGAGACTATCACTTTGTAGATACTGTCTGTCTTCACATGGTG---------------------------------CCTGCAGTATACCTGGTTTCATGAAGGAAAGGAA-TGAGAGACAGGAGCAGTTCATCAAGGTGAAGGTGGGATTGATGAGCTCCCTCTCCTCATCATATGAGAAAACTTCTAAGACAGGCAGTCAGGGAAGGGGCTAGAGGAAAG-CTTACAGACATCCC

a score=37888
s chr3            92991524 2312 + 160039680 ACTCCCCTATCATCAACCTAGTCATTAGCAGCACATCAATCAGTCATTACAACTC--ATCAATCATGCTCCAAAATAATTTTATCATTTTATACTC-AATACCAAATACTCCACAGAAAGGTAAATATGGATAAAATC--CTTTACCACATTACACTGAGGTATTGTACTATTAATAAT-----ATAGGACCTT-CACAACATTGCCT---CTCATCCATAA-CCTACCAAAATGTTAGTTCTGCCTCCCACAGGACTTCGACCCATCCTCAG----------------TCCGTTAGCTAATGCATTCCACTTAAAGGGCTGAGTGATC--AGAGGACTCAACACCCTTGAGAATCAGGAGCAAATCACATCTGACA-----TTTTTCTCTGA-----------------------TTTAAAAAAAAAAA-------------------------AACTTACA------------------------CAATATTGAAATGGTCAGAGGCAGAAAATGTATTCTATGCATTGCTATATTCACACTTCCCAGC--AAAAATACAAGGAACAGGCAGGTTAAAGTATAAGAGCTGAATGAATAAAAGAAGGAATAGCAGATCTCTGGTACATTTGAGAAGCAGT-GACAGAGATTGCTTAATTCTTCCTTGTCAGAAATCTTGG-AAACATGAGGAAGATGCTGGGAGCATTGGGTG-------------CTGCCACCTCCTCTGT-TGTGAAAGCAGCAGCATGCTTGAGCTGTGCATCACACACCTGACA-AGGATAAAAGGGCTGCTGCTCTGGAACATGCAGCCACAGCCTCTTCAAC-ACAGCCTTCTTC----TCCTACCTTTGCAGAACCTGGTGAGTACCTAACTAGGGATAGGAACTCATCTTAGAGGGTGTAGAGATGACAAGC-TGGACATGGCCAAGGTGAAAGAAGCAT-GGTGTCCAGTGTGAAGGCAGCAGAAAGTGGA-CCTGCCAGGGGCCAAGAGACAG----TGAGGAAAATAGACAGGAGTCTCTGTGTGTACATCAAGGTTTGTGACACACCAGAGTCCTGGCTCTCAAGATTGCCTCTATTCT-ACTGAGAGGTTTGCATCAGCCCAGAGGATTCTCCAAGAGTCATTTCCCCATGACCTGTATTTGCTACA----TTTTAG-----CAGAGAGCTAC--------TTAGAAGTATCAT-TACCTTCTGAAAGCAGGGCTAAAAGAAGAGAATGTCTTGCAGGTCA-------TGGAGCTCAGTTACCCTTTGCCTTTGTAAACCTCGTTGTTCTGAGTGCACTTACTGGGGATACGTGCTGAACTTTATGATAGTCTTGAGAATGCTGTATTCAGATGGATTTGTGCCTTCATGGTCCTATTTATTTGCAGATAAGTCAAGGAAGTCATGTGTTTGACAGACTAAGTCAGTAGACAC---TCAACAGAAGCTTCTCC-CTATGTTTCTATCCTACTCTTCT-AGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGT--------GCAATTGGGAAAGAAACACTAT-CAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAGTTTCTCTGTCTTCTTTAAGTGCTGAGATGTTTCCCAAGAGAGCTC--AGATCTCTCCTGGCTCTT----CCTGTTCT--------CCTCAAGATCCTGTACCTTGATATCTT--------GAGAGCTTTTGATAACTGCCTGGGTGGTTATCATCCTGTACTTGACCCTGTGGAAAGTAAAGAATGTGTTTCTCAACAGCACTGTGTGTCTCATGTCTGTCTCTGTGTGTATCTCCTCCTGCTCTGTTCCTCTAGTCAGTACTATTTAGCATGTAGAGTAGATGATGCCTCCACAGAAGAGCAGCATGGTGGGCTTAGGGGCAGG--------GGAGGGCGTTGCATCAG-----TAAGAGGCTACTGGCTTTGATTCCTGTGGGAGACTTGACTAACCTGTAACATGTGTGGTAAGTGCTCTGAC-------TGGTACCCAGA----------------------TTCAACTAGAAGACAAAGACAGGAAATGGGTAGTCCAGGGAAGCAAAAACTAACAGATAGGTAGCCAAGAGTAAGGAAG--TAAAGGAAAGCTATGGAAAGGCTGTAAATAG-----TTTCTCCAATAATATCTGAGGGCACCAC--TGAGAGCTAATGCTGAAGAGGTTAT----GAACACTAGGAGAAAGCAGAGCTC
s HiC_scaffold_1 138694647 2341 - 233722169 ATCCACATATCACCACCTt---cataaacaacaaaataaatcacctTCACGACTCCCATCAATT---CTCTTAAATA---------CTCCATGCTCCAATATCATAAATCTTTCAGGAGGATAAATATGGACAAATTGAGCTTTTTCATATTAAGCATGAgtcttgtaatctcagctctctctCATAGGTTCTTTCACAATTTTGTCTACTCACACACATAATCCTACTTCGATTTTAGTTCT-----CTGAGGGACTCC-ACCTA-CCTCAGAAAAGGCATGATTCCATCCATTACCTATTACATTC-ATCCCTGGGGTTCAGTGGTCTCAGATCACCCAACATCCTCAAGAGTTAGTATCTGACTAGATTTAAAAATCTCGTTCTCTTTGAGAACATGCATAGCAATAGATATATTTGGAGACAGTAATATCACAGGTGAATCACCAGCATCAGACAtacatgtttatttctttgttattacaGTCAAACTTGAAATACTCAA--GCAGGAAATGTGTCACATGCATCTCTTTATT-ACATTGCCCCTCCCAAAAAGACA---------CTGTTTAAATTATCTCATCTGAG------AAGAGAGAAATGTCAGATTTTCATCATATCTGGAAAGTAATCAATGAAGATTTACTGATTCTCTCATGCCAGTTGTCATGGCAAGCATGAGGAAGAGGTTGGAGACTTGGGATGGGACTGCTGGGCTCCGTCACTTCCACTGGGCGTGAAAGCAGCAGCATGCTAAGCCTGTGCATCACTGACCCTACACAGGATAAAAGggctcctgccctggcctcctcaGACAGAGCCTCCTCAGCCACAGGCTTCTTCCTCTTGCTGCCTCCTCTGAATCCGGTAAGCATCCAGCAGGGCACAGATGCCCTGTCAGGAGAGCGTGG-GAAGATAAGCACAGACTACAGAGGGAAGAGGGAAGCAGAGGTGTCTGCCATGGAGGCAGCAGAGGGCAGAACCTGGAGGGCAGCAGGAGGCAGGGGATGGGGACAGGGGGCAGGG-----------------AAGCTCTGTGGGATGCTTGAGTCCTTGCTGTCAGCGCCCCCTAGCTCCTTCCTGAGAGACACACAGGGGCCCAGAGAGCTCTGCAGGAGCTACTCTCCAATGCTGGGAATTCACTTCACTGTTTCTGGGAATACAGAGGACTCCAAGTCCAGTTAGAGCAGTCACCTGCTCTTCCACAGTAAAGT----GGAAGGAAATGTATTTCCATTCAATTTAAAGGgacataaattttcctttttcctggctA------------------------------------------------------CTTAAGGAAGC-------AGCTAGAGTTGGG-----------------------------GGCAAGGATGGTATA--------AGATCATCCCAG-AGACACCATTGGCCTAAAGCTTTTCCACTGAGCTTTTTCCTTGCTCTCCCCAGGTTCCCTGACTGCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCCTTCCCCCAAATGCCCC---AAG---------AAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGAACTTAGCAGCGGTGATGAGAAGTTTTAAAGGAGACAAAGTCCAAGGACTGTTCTCTGTCCCT------TGCAGT--TTTTTCCATATACTTCAATCTGCTTT-AGCACTGAGATGTTTCTTGCGAAAGTTCTGAGTTCTCTGCAGGCTCTTCCTGCCTGTTCTCTAGGAGCCCACAAAATACT-CACCCTGGTATCTGCCTACAGAAAAGGCTTGCAGCATCTGCC----TGGTTATGAT-CTGTGTCTGACCCTGCGAAA---CAATAAAGTTTTTTCTGAC-------------------CTTGTTCTGTGGATGTCTCCTAC--------TCCTCCAGCCAGTGTTTGCTGCCATAATTAACAGTCCCTTACTGTACACTAGAACAGCAGCTTTAACTCCCCTGCATGGTCATCAAGAAAGACACTGTATTGGGGTAAGAAAAGGCCAC----------ACCCAGCCAGGGCCTGGCTTCCCACTAACATGTTT--TAGACTCTCTTGCAGTCTATTGCCATCcaaatatgaaaaactgttctaGGTTTTCTCACTAAGAGACAGAGAC------TGGGGTGTCAGTGGATACAAAACTTAGCAGAAAAGTTGTcaagagacaggaagaagaaaagaaagcctcAGTACAAC---AAATAGCACAACCTCTTTGGTAAAGAGCTGGGGTACAATGGTGAGACTTAAATCTGAAGAGAATGTCTTAGCTCACCGAAGAAAAACAGAAGTC

a score=21487
s chr3            92992769 407 + 160039680 TAAGTCAAGGAAGTCATGTGTTTGACAGACTAAGTCAGTAGACACTCAACAGAAGCTTCT----CCCTATGTTTCTATCCTACTCTTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGA
s HiC_scaffold_1 138681855 399 - 233722169 TGGGTGAGGGAGGGCAT----TTGACAAA---AACGAAGAGACGCTGTGCTGAAGTTTCTGGGTTcaaatgtttgcattttgtt--tcaaGGTACAATTCCCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAACCCCCTCCCAAGTGCCC------------CTCCCCCAAATGCCCCAAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgctccttGCTCTGGGGGCTGCGGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGCCGCAGGTCCCACAGGTGCAGGCTGCGGAGTTCAGACTCCTGTGATGGTGACAGTGGTCGGCAGTCTGGAGGCTCTGGCTGTGGCCACAGCTCTGGGGGCTGCTACTGACTTGGA

a score=18218
s chr3            92992822 621 + 160039680 AGCTTCTCCCTATGTTTCTATCCTACTCT-TCTAGGTCCAGTTCCTGC--CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCT------CTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGA--CAGTGCAATTGGGAAAGAAACACTATCAAAAACGAGTCTAT-------------AAACCTCAAATGTTCAGTCCTCTT-------TCCCAGTTTCTCTGTCTTCTTTAAGT-----GCTGAGATGTTTCCCAAGAGAGCTCAGATCTCTCCTGGCTCTT-----CCTGTTCTCCTCAAGATCCTGTACCTTGATATCTTGAGAGCTTTTGATAACTGCCTGGGTGGTTATCATCCTGTACTTGACCCTGTGGAAAGTAAAGAATGTGTTTCTCAACAGCACTGTGTGTCTCATGTCT
s HiC_scaffold_1 138457840 631 - 233722169 AGTTTCTCTCTGAGCTTTTTCCTTGCTCTCTCCAGGTTCCCTGACTGCATTGAGATGTCCTGCCAGCAGAACCAGCAGCAGTGACAACCCCTTCTCAAATGCCC------------CTCCCCCAAGTGCCCCCAGAAGAGcccagcactgtgcctgcctgctACCTCCTCCTGTTCTGCCCCCACATCTGTGGGCTGCAGTGGCCTCAGCTGAAGCTCTGAGGGAGGCTGCTGCCCGTGCCACCACAGACATCACAGGTCTCATAAGTGCAGGCTGCGGAGTTCAGACTCCTGTGATAGTGACAGTGGTTGGCAGTGTGGGGGCTCTGGCTGTGGTCACAACTCTGGGGA-TGCAGCTGACCTAGATCTGATGCTAAGTTGAGAGATTTGTTAGGAAAGAAGAGACTCCAATGACCAAGGGAAAGCCTCAAGCTGGCAATCCTATCCCAGGGATCCTAGGCTCTCT---TTCTTGGAGCAAGAAGCTAAAATCTTCATTGGGAGGAATGTGTTTCCTTCAGAAGCCTCTACACCAGTGCTTTCCAAAGTCTCAAGCTTTCCCATTTT-----TTTGTAGTAAT----------GATAACA-CATCTGCCTCaacttgttaaaa--aataaaagtgtttctcAACACTACTTCTTGTCCCTTAACT

a score=18271
s chr3            92992850 322 + 160039680 TTCTAGGTCCAGTTCCTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGG---CGCAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACC
s HiC_scaffold_1 138486131 313 - 233722169 TTCAAGGTAAAATTACCACCAAGATGTCCTGCCAGCAGAACCAGCAGCAGTGCCAGCCCCTTCCCAAGT----TTCCCTA--------CCCCAAGTGCCCCCAGAAGAGCCCAGCACAatatctgcctgctgcttcctCCTGCTCTGTTCCCAACTCTGGGGGCTGCAGTGGCCTCAGCTCCAGCTCTGAGGGAGGCTGCCGCCTGAGCCACCACAGGCACCGCAGGTCCCACTAGTGCAGGCTGTGGAGATCAGACTCCTGTGATGGTGACAGTGGTCTGCA------GGACTCTGGCTGTGGACACAGCTCTGGGGGCTGCTGCTGACC

a score=15306
s chr3            92992856 325 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCC------AGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCGC---AGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTG
s HiC_scaffold_1 138548583 310 - 233722169 gtcAAATTCTCTGACTGTGTGTCCTACCAACACAACTAGCAACAGTGCCAGTCCCCTCCC-------------------------CCAAGTCCCCCCAGAAGAgcccagcacagtgtctgcctgctgcctcctcctgctctgcttccagCTCTGGGGGCTGTGGTGGCCTCTGTTGCAGCCCTGAGGGAGGCTGCTGCCTGAGCCACCACAGATGCTGCAGGTCCCACAGATGCAGGCTGTGGAGCTTGGACTCCTGTGATGGTGACAGTGGTAGGCAGTCTGGGTGCTCTGGTGGTAGCCACAGTGCTGAGAGTTTTTGCTAATATGGACCATG

a score=16016
s chr3            92992856 359 + 160039680 GTCCAGTTC-CTGCCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCTtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCC------CCAGCTCTGAGGGAGGCTGCTGCCTGAGCCACCACAGGCG---CAGGTCCCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGACAGTGCAATTGGGAAAGAAACACTATCAAAAACGAGTCT
s HiC_scaffold_1 138610633 342 - 233722169 gtcAAATTCTCTGACTGCGTGTCCTGCCAACATAACTAGCAGCAGTGCCAGTCCCCTCCC-------------------------CAACGTGCCCCCAGAAGAGCCCAGCATAGTGTctgcctgctgcctcctcctgctctgctcccagCCCTGGGGGCTGCGGTGGCCTCAGCTCCAGCCCTGAGGGAGGCTACTGCCTGAGCCACCACAGGTGTTGCAGGTCCCACAGGTGCAGGCTGTGGAGCTTGGACTCTTGTGATGGTGACAGTGGTCGGCAGTCTGGGGGCTCTGGTGGAAGCCACAGTGCTGAGAGTTGTTGCTGATATGGGCCATGGTATAAAGCA--AAACATCTAAGAAAATAAATCT

a score=10665
s chr3            92992868 408 + 160039680 CCGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCCT----------------tccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAGG---GAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACC-----CAGACAGTGCAATTGGGAAAGAAACACTATCAAAAACGAGTCTATAAACCTCAAATGTTCAGTCCTCTTTCCCAGTTTCTCTGTCTTCTTTAAGTGCTGAGATG
s HiC_scaffold_1 138513744 413 - 233722169 CCAACATGTCCTACCAGCAAAAGCAGTAGCATTTCCAGGC-CTTCCAAAGTGTCCCAAGTACATCCAAAATATCCACAAAGTGTGCTCCAAAGTACCCACCCCAGTGCCCAGCGTCATGCCCTCCTTGGGTCTCTTCCTGCTGTGACTCCACCTCTGGGAGCTGCTGTCGCTCCAGTTCTGGGGGTAGTGGTTGCTGCCTGAGCCACCACATGCCCAGTCTCTTCCAACACCACTGCAAGCACCAGGCTCCTGACTGCTGTGAGTGTGACCCCAG---------TGGaggctctggctgctgccctggCTCT-GAGGCTGCTGCTGAGCTGGGTCAGGAGGAGCTACTGAGAAA-ATGGATGATCCA----GAGCCCATTACCTCCTGATG---------CTTTCCTCACTACACTCTCTCATCTAAATCATGAATTG

a score=12942
s chr3            92992869 321 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------TtccccaaagtgctccccaaagtgccccccaaagAGCACAACACAGTGTCTG------------CCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGA-----CCCAGACAGTGCAATTGGGA
s HiC_scaffold_1 138523034 347 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCTAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGCCCACCCCAGTGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCACCACCGCCATAGACACCAGGCTCCTGATTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGAAGAGCTCTTGAAA

a score=13598
s chr3            92992869 308 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaaag------------AGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTC------CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGAC
s HiC_scaffold_1 138583866 329 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCAGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCGCAGTCTCTTCCACCACCGCCACAGGCACCAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGAC

a score=13593
s chr3            92992869 313 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaa------------agAGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAGGTCC------CACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGA-----CCCAGACAGTGC
s HiC_scaffold_1 138572592 339 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAGAGCCCAGCGCCATGCCCTCCTCTGGTCTCTTCCTGCTGTGGCTCCAACTCGGGGCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTCTCTTCCATCACCGACACAGGCACCAG-GCTCC--------TGACTGTTGTGAGTGTGAGCCCAGTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGCCCAGGAAGAGC

a score=12870
s chr3            92992869 308 + 160039680 CGAGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCCC---------Ttccccaaagtgctccccaaagtgccccccaaag------------AGCACAACACAGTGTCTGCCTGCAGCCTCTTCCTGCTGTGCTACAAGCTCTGGGGGCTGCAGTCTCCCCAGCTCTGAG---GGAGGCTGCTGCCTGAGCCACCACAGGCGCAG-GTC-----CCACAGATGCAGGCGCAGGAGCTCCAGTTCCTGTGACCGTGGCAGTGGTCAGCAGTCTGGGGGCTCAGGCTGTGGCCACAGCTCTGGGGGCTGCTGCTGACCCAGAC
s HiC_scaffold_1 138506226 329 - 233722169 CAAGATGTCCTGCCAGCAAAACCAGCAGCAGTGCCAGCCACCTCCCAAGTGTCCACCCAAGTGCACCCCAAAATGCCCACCAAAGTGCCCTCCAAAGTGTCCACCCCAATGCCCAGCGCCATGCCCTCCTCTGGTGTCTTCTTGCTGTGGCTCCAACTCGGGCCACTGCTGTGGCTCAAGCTCTGGGGGTGGTGGCTGCTGCCTGAGCCACCACAGGCCCAGTGTCTTCCACCACTGCCACAGGCAACAGGCTCCTGACTGCTGTGAGTGTG---------AGCCCACTGGgggctctggctgctgccatgGCTCTGGGGGCTGCTGCTGAGCTGGAC

a score=3986
s chr3            92992871 51 + 160039680 AGATGTCCTGCCAGCAGAGCCAGAAGCAGTGCCAGCCTCCTCCCAAGTGCC
s HiC_scaffold_1 138261810 51 - 233722169 AAATGTCCTTTCAGCAGAACCAGCAGCAGTGCCAACCTCCTCCCAAGTGCC

a score=35242
s chr3            93002876 2028 + 160039680 TGTGAAAGCTCGTCTTAAAGTGCCAGGATCTGTACATAGAAGGGACAATTTTGTCA-TGGGCAGACAGGGAGCAGATGGTGCCAAGATGGTTCAGAGCATAGCGGGAGGGTCAAAGGGTGGATGCCAGGCTAAGCATAGGGCCCAGCACTGGCCAGCATGCCAGGCAGCCAACCCTCCCACATGGTGCGAGTTTGCCTAATCCCCAGTGTGGCG---TTCCACCTCTGAAGGTCCCATCTGAGGCTTATGCTTCAGTCTATG-CACAGTctgccacccctgcctaaattacaggctggaccctgtca-ctctctatctctttact--gttgtattttct------------tcagtgtttgtggttttcttatttgtaatctgatta--tatttattttctgtctctat---ccttagcagaagtcaacaggaaatgt---------gttccctttt-----tcttcggccccttctgtaatgctgcacagagttagcatacttcacaaatatttgttgaatgaataaatgatgtgcatcacactgta--cctaattataataaagaactggaggcaagataatgcccaataataaaggaggtggttaaataaacagcaga-tagccatgaaatagaaaactagt------------taggcatGCAAAGCATGCTATGTG--------TTTACTATAATGAAAAGATGGTTTTACAGTACTGAGCAAAAATCAAGGGAGAGAGGGGACTCAATCACAGCCTGAATGCTTTATTAAACAAAAAGAGCCAGCATAAAGATGGACACAGAGTAATACACAATCAAGCCACTGAAAAACAGCATTGCAGCCTGAATAGGTTTATTTAGCAAATACAGCATAAAGAATGATGTGGAGAAACACACAATCAGCCAT-AAGACAGTTGTTATACTGATGAAAATTGT-------CTTTTGCTTAGTTATAATTG-CTCTTGTCCATAACAGATACAATTATTCAGTAA--AGTGGAAAGCTTACTTTAGTATCAAAA---CTACATA-TGTTTTCtttaaaaaataaaaata---aaaatGAAATGAACCATCAGACCAA---TGGAACTAATGCCCTGTCTC-GGATCCATTCTATGTTAACCAGGTCATGGCAGAGGGACTGAAACTGGGCAGCTTACAGGGCTTATATAACCCTACCAAAAGCTAAAGGATAG-GAAATTTGGGACTACAAATCTCCAAATGATTTTCAAAACATATTTGGAGCTAAAGAAGTAATATTTGTAATAATCTCTGGTCTTAATATTGCTTGTAACTCAGTTATGGAATGGATATAATGCCAAAAATGAGTGCAGGTATTTTCCCTATACTTCTGGACTGGGTGGAGTATAGGGTTAATGTGCTGCTTTGTATTTGAAATGCACCACACCTTGATGTAATTTTCTGATGAGTATAAAGTACAAAGCAAGGATCAAATTGCATAGACTGAGCTGTCAACAATCAATCAACAGCTCTGTTGAGTAACTTTCATATACAAGCCATGTTTCCTAAATGGTAAAGAAACACCAAGATGTATCTATAG-AGTCACTATCCCCCAGAAGTTTACTGCTGGGTAGTAGCATAGGAGATATGGTA-ATGTAGCAAAGCAG--------AAGGGTCTTTCCTATAGGGCTTTGGCATT-CTTTTGA----CTTTCATATCAATATCATTTGCTTCCTCCACAGTAGTCTC----AACTGCTCGCTTACCACCCCACAAG-CCAACAGAAATCCTT---------------------------------TAGCCTGGTTTCCCTTAG------------CAATGGAGACAGATTAGGCCTTCCAAAGAGTCAGCTACTGGTTTTGACAGAACTACTTAATGGAAAGTTTG-----TAGTCATCCTAAATATGGGGTGGGGAGGATGTGTTTAAAATGTACC--TAAAAGAATAACTCAGCTTTCACAAAAGTAAGAGAATGTCTCACATTTC-TAATGGAAGGAGAAAT---AAAACCAAAGCCAAAATAAAAAGCC------TCAAAGTGGC---TTTCTGAAAGTGGAGACTGTCATTTCCTAGAAATTTGGAGTCCAAGATGGTGAAGATCAGGACATAAATTTGAAACTAATGAATTGGGCATCCTTACTAAGTTAAATATGGATTAGAga
s HiC_scaffold_1 138703356 1987 - 233722169 TATGGAACTTCTCTGTAAAGGATGAGACTTCACACACTCAACAGATAATATTGTTACTGCGCAAATAG----CAGATAGTGC-----------------TCTCCGAAAGGC-----AGTAGAAGTCAGAATAGCACAAGGAACCTGCATCAGTCAACAGGCT----------CCCCTCATCAGCATGGAAGGCTGGCTCAGCAC-AGTGTGCAGCACTTCTTCCTCTACGGGTTC-ACCTAAAGTTTGTCCTGTGCTGTATGACACCACCTATTTTCCATGTTTAAATTACAGACTTGACCTTGTCAACTCTCTATCTCATTACCccgttttattttctaattaccAATTGCCACTCTGCATGATTATCTTTTTTGTGATCTGATtacttgcttattttctgtcttcctgtgCCCCATCAGTAGATAACATTGAATGTAGAAACTTTGTCCGCCATTGTGGATCCTCAATACTTAATATAGTATTGGGCAGAGttaaagtatttaataaatatttgttgagtgaataa--taTATGCATTAC-CTGAAAATTTAATTATAGTAAAGAATTGGAGGTAAGACAATGCCCAACAATAAACAATG-GGTTAAATGAACAGTGGACtacccacaaaataaaaaactattcaaatacaaaaataggctttaaaaatttccattgtGGATGAAAGTCTATCATA-TGAAAAAATACTGTTCCATTATTATGTAAAAAC--------------------ATCACAT-----------------ACAAAATTAGCCTTCA---------------------------------------------------CAGACTGggtatttttg-----------------aaagaaaactcTAGAAAGGTACACAATCAGGCATGAAGATGGTTATC-TGTGAATGATAGTTATGctttatattttgcttatttatattaatcttttttcTGCAATGAATACAACCATTCAGTGATAAGAGAAAAAGTTACTT-AGTATCAAAAAGTTAATAtaatgattttcttaaaaaattgaaTTCTTCAAGATGAAATAAACTATTGTATGAGGCGTTGATCTAACATACTGTGTCTAAATACATTAATAATTCACCAGA-----------GGACTTTTTCTGCATAT--------GCATAAGTGATCAAATGTAACACTAAAGATGATCTAAATTTTGGACCACTTATGActaca-actttttaaaacataatttgaaCTACTAAATTATTGCAT-TAATCATTTCTACT-TTCTCATTGGTTATAAACTAGTTATGGAATGAATACAATGTCAAAAATGAGCCCAGACATTGTTTGTATATTTCAGGACTAGGTGGAGTGCAGGGTTAATATGCTGCTTTATA-TTGACGAACACCACACCTTAGTGTAATTTTCTGATGAATATAAAGTACAAAGCAAGGATTAAAT----TAGTTTCTGCTGTCAAC--TCAATCAACAGTTGTATTGAGCAACTTCTACTTCTAAACCATAATGC--AAAC--TGGAGAAACTTCAAGCTATATAGAAAACAAttgctgtctttaaaaaattcGGTGTCTAAAAGTTATATAAATGATCTGCTGTGTTTAGCAATGGGATGACAATCAAGAGTC-TTCCTACAGGGGTTTGTCTCTGTTTTTGAGGTTCCTTCACATCAAACACTATTGGTCCTTCCCCAGTAGTCTTCAGAGAATACTTGCTT---------CAAGAACAACAGAATTTGTTGTTCTTGACAAATTCTGCCTAACCAAATATGGATAACCAAATTTCTCTTGGTCATCCTTAATACAACAGAGACAATTTAGAACTTTCAAAGCACTAGCcataatttttattagaaaattttaa---aatatttgcattataaTTATCTCAACTATTagataaaa----------tataatgaatcttTTAATGTATATGTAAACttgcaataaaataataaaaattccaaaattccaAAATGAAAGGGACAattgaaaaaccaaaaccaaaacaggaagcCAATAAGTTGAAATGGCAGTTGGCTGAGGATGGAAATTGTCACCATTTAAGAATTTGAGATCTAAGCTCATGAAGAATAGG---TGACTTTGGGAATAGAAAAGTAGACTATTTCACT--GCAAAGGATAGACTAAAGA

a score=35989
s chr3            93009403 3736 + 160039680 [encoded data, 4365 characters]
s HiC_scaffold_1 138719425 3905 - 233722169 [encoded data, 4365 characters]

a score=189321
s chr3            93013902 9506 + 160039680 [encoded data, 10539 characters]
s HiC_scaffold_1 138724187 9637 - 233722169 [encoded data, 10539 characters]

a score=6693
s chr3            93018046 188 + 160039680 TCAATGCTGCTT-TCCATGTTCTTCGTGGCCAGGTCAGCAGCAACCTCCAGAGCAGCAGCTAGAGCCCCCAGActgctgatggctgttgctgccactgctgctgccaccactgctgcccccactgctaccacagcagctgctgccaccgctactgccaccgctactgccaccactgctgctgccacagc
s HiC_scaffold_1 138300128 168 - 233722169 TCAGTGCTGTTTCTTTGTGCTTCTTATGGCCCGGCCATCAGTAGCCTCCAGAGCAACAGCCAGAGCCACCAGACTGCTG---------TCTATTGCGGCAGTTGCAATCACTACTGCAGGTA------------CAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGC

a score=19487
s chr3            93018277 550 + 160039680 gctgctgccaccgctgctgccacagcaactgctg-ccaccgctgctgccaccgctgctgccaccgctgctgccaccgctgctgccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAG----AGAGAAT--CGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGG------------------------TTGGAGGGCACTTTGGGGT------CTT------------------GCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACA--TCTCCAAAGGAACTGGATAAAAGTGAAAAATAATACAAAAAAATATAAGGTCAACAGCTCAAATGTTGCTTTGAAGACTGAACTATGAATTT-ACAGTATCTTATCTCTAAAATAGTTAGAAGTTTGAAAACCCAATCTCTTAAATTTATTTCGAGA---ATAAAAAGTACAAATGATCCCTGTATAAGCACTTCTTCCTTCCA
s HiC_scaffold_1 138258135 590 - 233722169 GCAGCAGCAACCAGAGCCCCCA----GACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGACAGGACATTTTTCAAGAGGAAGTCAATAAGCctaagg--------agaaaattttaaaaccatcAGGACAAGTGTC------AAGGTATATCCTTGGATTTCACTGGGCcctatttcaaaacaagct---aCTTTGTGAACAAGATCTATAACCAGAATTTGGAAactgatacaaaataaaattgcccacagtagaaatattttctctctcta

a score=18278
s chr3            93018277 382 + 160039680 gctgctgccaccgctgctgccacagcaactgctg-ccaccgctgctgccaccgctgctgccaccgctgctgccaccgctgctgccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAG----AGAGAAT--CGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGG------------------------TTGGAGGGCACTTTGGGGT------CTT------------------GCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTC-----------CAAAGGAACTGGATAAAAGTGAAAAATA
s HiC_scaffold_1 138197512 444 - 233722169 GCAGCAGCAACCAGAGCCCCCA----GACTGCTGGCCACTACCACCGCCACTGCTGCAGCAGCCACCGCCCCCGCCACTGCTGCagcagccaccaccaccaccactgctgcaGCAGCCACCGCCACCGCCACTGCTGCAGCAGCCAGAGCTCTGGTGTCGGTGTCGGAGTCGAAGAGATCTGCGAGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCTCCGGAGGCACAGCAGCTCCCAGAGCTAGAGCCACAGCAGCCACTGGAACCCAGGCTGCAGCAAGAAGAGACTGGGGGGCATTTAGGGGGACATTTCGGGGGGCACTTTGGGGTGGGGCACTTGGGAGGGCACTTGGGAGGGCACTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAGAGATGCAGGAGCTGAGGGAAAGTAAAACACA

a score=12218
s chr3            93018292 386 + 160039680 gctgccacagcaactgct---gccaccg--ctgctgccaccgctgctgccaccgctgctgccaccgctgctgccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGA------------AGAGG------TTGGAGGGCACTTTGGGG---TCTT------GCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAGGAACTGGATAA----AAGTGAAAAATAATACAAAAAAATATAAGGT
s HiC_scaffold_1 138300171 401 - 233722169 GCCTCCAGAGCAACAGCCAGAGCCACCAGACTGCTGTC-----TATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGC---CACAGGTACAGGCACCACCACTGC------CACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAAGAGATCGGTGGGGCCTGTGGTGGCTCAGGCAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAG---GTAGAGACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGGTACTCTTAGGGGGACACTTAGGGGAGCACTTAGGGGAACACTTGGGAGGAGGCTGGCACTGCTTCTGGTTCTGCTGGCAGGACATTTTGGCAAGAGTTAAGAGATCctagatgaaaaa----atagaaactcaTAAGAT

a score=5105
s chr3            93018322 269 + 160039680 gccaccgctgctgccaccg--ctgctgcc----accgctgctgccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGGGCACTTTGGGGTCTTGCATTTGGGAG
s HiC_scaffold_1 138300180 257 - 233722169 GCAACAGCCAGAGCCACCAGACTGCTGTCTATTGCGGCAGTTGCAATCACTACTGCAGGTACAGTGACTGCCACAGGTACAGGCACCACCACTGCCACTATTGCAGCAGCCAGAGCTCTGGTGTCTGTGACGAA---GAGATCGGTGGGGCCTGTGGTGGC-----------TCAG----GCAGCAGCCCCCACTTCCAGAGCTACAGCAGTCCCCTGAACTGGAGCTACAGCAGGTAGAGACTGGAGGAAGGCATGAGGCTGAGCACTTGGAGG

a score=7957
s chr3            93018340 297 + 160039680 gctgctgccaccgctgctgccacagcaactgctgcc-accgctgctgccacagcaactgctgccacc-----gctg-ctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCC------------------------------------------CCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGG-----------------------AGGGCACTTTGGGGT------CTTG------------------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAGG
s HiC_scaffold_1 138154331 371 - 233722169 GCTACTTTAACAACAGCCTCCA----GACTGCTGCTTGCTGCTCCCTCCACAGCAGCTGGAGCCCCTTGAGGGCTGTCTGTAGCCCTCAG-GCAGTGGCAACTATAGCA----------------TTGTGGTGGTTCAGGCAGTAGCCACCAC-TCCAGAGCTGCAGCAGCCAACAGAACTTCAGCAGCCCTCAGAACTAGAGCTACAGCAGTTCCCAGAGCTGGAGTCACAGCAGCCCTCAGTGCTGACATTGCAGCAAGAAGAGACTGGGGCCACTTAGGTGGACACTTTGAAGGGCATTTTGGGTTGGGACACTTGTCAGCACATTTGGGAATACACTTGGGAGGTGTTTGGCACTATTGCTGATTCTACCAGTAGGATATCTTCAAAGG

a score=10435
s chr3            93018341 295 + 160039680 ctgctgccaccgctgctgccacagcaactgctgccacc---------gctgctg----ccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGGGC---------------ACTTTGGGGTCT----------------------TGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAG
s HiC_scaffold_1 138135515 310 - 233722169 CCACTTCAACAGCAGCCTCCAGATTGTAGGCTGCCACCCTCTCTATAGCAGCTGGAGACCCCAGCAGCTG-----------GCTGCAGCAGCCAGAGCTCTCATGTCTGTGGCAGTGGGACCAGCAGTGCCTGTGGTGGCTCAGACAGCAGCCACTACCCCCAGAGTTGCAGCAGCCCCCAGAACTG--ACC----------------------CTGCAGCAGGAAGAGACTGGGAGCCACTTAGGGGGACACTACTTTGGGGCCTTTAGAGGTAGGATACTTGGGGGTGCACTTGGGAGGGGGCTGGCACTGTGGCCGGTTCTGCTAGAAGGACATCTCCACAG

a score=14299
s chr3            93018350 286 + 160039680 ccgctgctgccacagc----aactgctg-ccaccgctgctgccacagcaactgctgccacc-----gctg-ctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGGGCAC------------------------TTTGGGGT------CT------TGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAG
s HiC_scaffold_1 138145828 333 - 233722169 CCCCTTCAGCAACAGCCCCAGATTGCTGGCTACTCCCCCCTCCACAGCAGCTGGAGCCCCTCGAGGGCTGGCTGCAACAGCCAGAGCTCTGGTGTCTGTGGTGGTGGGACCTCTGGCGCCTGTGGTGGCTCAGACAGCAGCCACCACCCCCAGAGCTGCAGCAGCCCCCAGAGCTGGAGCCACAGCAGCCCCCAGAGCTGACACTGCAGCAGGAAGAGACTGGGGGGCACTTAGGCGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGGGTGCATTTGGGAGGTGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTCCACAG

a score=8776
s chr3            93018358 272 + 160039680 gccacagcaactgctgccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTC---GGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCT------GCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGA-------------------------AGAGG-----TTGGAGGGCACTTTGGGGT---CTTG------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 138368922 317 - 233722169 GCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCATTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAGCTTGAGCCACAGCAGTGGCCCAAGTTGGAGCCACAGCAGGA---AGAGACCAGAGGAGGGCATGGCTCTGGGCACTGGGGTGGGCACATTGGAGGGCACTTTGGTGGGCATTTTGGGGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=7108
s chr3            93018362 266 + 160039680 cagcaactgct-----gccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAG---AGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGG---------------------------------------TTGGAGGGCACTTTGGGG---TCTTGCAT----TTGGGA--------GGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACAT
s HiC_scaffold_1 138377587 310 - 233722169 CAGCAGCAGCCTCAGAGccagggcagcagccagagcctCCACTGGGGTCACACTCACAGCAGTCAGGAGCCTGGTGCTTGCAGTGGTGTTGGAAGAGACTGGGCATGTGGTGGCTCAGGCAACAGCCACCAC------------------CCCCAGAACTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCCAAGGAGTGCATTATGCTGGGCTCTGGGGTGGGTACTTTGGAACACACTTTGTGGATATTTTGGATGTACTTGGGACACTTTGGAAGGCCTGGAATTGCTACTGGTTTTGCTGGTAGGACAT

a score=9218
s chr3            93018362 268 + 160039680 cagcaactgct------gccaccgctgctgccacagcaactgctgccaccgctgctacagcATCCAGAGCTGTGACGTC---GGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCT------GCAGCAGCCCCCGGAGCTGGAACCACAGCAG----CCCCCAGAACCCAGGCTACAGCA---------GGAAGAGG----TTGGAGGGCACTTTGGGG----TCTTG-----------------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT
s HiC_scaffold_1 138408315 319 - 233722169 CAGCAGCAGCCCCCAGAGCcatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTATGGCGGTGGTGGAAGAGACTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCATCCCCAGAGCTTGAGCCACAGCAGTGCCCCGAGTTGGAGCCACAGCAGGAAGACACCAGAGG--AGGGCATGGCACTGGGCATTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCATTTTGGAGTGCACTTGGGTGGACACTTGGGAGGTGGCTGGCACTGCTGCTGGTTTTGCTGGCAGGACATCT

a score=8364
s chr3            93018362 322 + 160039680 cagcaactgctgccaccgctgctgccacagc------------------aactgctgccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGG---GCACT---TTGGGGTCTT---------------------GCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTC--------CAAAGGAACTGGATAAA--AGTGAAAAATAATACAAAAAAATATAAGGTCAACAG
s HiC_scaffold_1 138613652 358 - 233722169 CAGCAGCATCCCCCAGAGCTGTGGCCACAGCCAGAGCACCCAGACTACCGACCACTGTCACCATC---ACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCc-agagcagggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGCCATTTGGGGGAGGGACACTTGGGAGGGGGCTGGCACTGCTGCTGGTTCTTCTGGCAGGACATCTCAGTGCGGTCAGGGAACCTGGAGAGAGCAAGGAAAAATCTCAGAGAGAAACTTACAGCCAGTAG

a score=8867
s chr3            93018362 322 + 160039680 cagcaactgctgccaccgctgctgccacagc-----------aactgctg----ccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGG---------------------------GCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT--------CCAAAGGAACTGGATAA---AAGTGAAAAATAATACAAAAAAATATAAGGTCAACAG
s HiC_scaffold_1 138633186 360 - 233722169 CAGCAGCAGCCCCCAGAGCTATGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCGCAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCCAGAGCAGGTAGCAGagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAGGGGCACTTGAGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCAGGGAACCTGGAGAGAGCAAGGAAAAAGCTAATTGAAAAAGTTTTAGGCCAATGG

a score=8732
s chr3            93018362 322 + 160039680 cagcaactgctgccaccgctgctgccacagc-----------aactgctg----ccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGG---------------------------GCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCT--------CCAAAGGAACTGGATAAAAGTGAAAAATAATACA---AAAAAATATAAGGTCAACAG
s HiC_scaffold_1 138647044 360 - 233722169 CAGCAGCAGGCCCCAGAGCTGTGGCCACAGCCAGAGCCCCCAGACTGCCGACCACTGTCACCATCACAGGAGTCTGAACTCCACAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggaggcagcaggcagacactgtgctgggcTCTTCTTGGGGCATTTGGGGGAGGGGCACTTGGGAGGGGGTTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGCAGTCGGGGAACCTGGAGAGAGCAAGGAAAAAGCTCATTGAAAAAGTTTTAGGCCAATGG

a score=8732
s chr3            93018362 304 + 160039680 cagcaactgctgccaccgctgctgccacagc-----------aactgctg----ccaccgctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTG---------------------------GAGGGCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAGGAACTGGATAAAAGTGAAAAATAATACAAA
s HiC_scaffold_1 138439678 328 - 233722169 CAACAGCAGCCCCCAGAGCTGTGGCCACAGCCAAAGTCTCCAGACTGCAGACCACTGTCGCCATCACAGGAGTCTGATCTCCAGAGCCTGCACCTGTGGGACCTGCGGCGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGAGCTG------------GAGCTGAGGCCACTGCAGCCCCCAGAgctgggagcagagcaggaaggagCAGCAGGTAGATACTGTGCTGGGCTCTTCTGGGGGCATTTGGGGGCGGGGCACTTGGGAGGGGGCAGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTGGTAATT---TTaccttgaaataaaatgcaaa

a score=7995
s chr3            93018362 269 + 160039680 cagcaactgctgccaccgctgctgccacagc----------aactgctgccaccg---ctgctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAAT-CGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACC----------CAGGCTACAGCAGGAAGAGGTTGGA--------------GGGCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTC
s HiC_scaffold_1 138474316 291 - 233722169 CAGCAGCAGCCCCCAGAGCTGTGGCCACAGCCAGAGTCCCAGACTGCAGACCCTGACACCATCACAGGAGTCCGAGCTCCGCAGATTGC-ACACATGGGGCCTGCGGTGCCTGTGGTGGCTCAGGCAGCAGCCTCC---CTCAGGGATG------------GAGCTGAGGCCACCGCAGCCCCcagagcagggagcagagcaggaggcagcaggcagaAACTGTGCTGGGCTCTTCTTGGGGCATTTGGGGGAGGGGCACTTGGGAGGGGGCTGGCACTGCTGTTGGTTCTGCTGGCAGGACATCTC

a score=11585
s chr3            93018365 295 + 160039680 caactgctgccaccgctgctgccacagcaactgctgccaccgctg---------ctacagcATCCAGAGCTGTGACGTC---GGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAG------CCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGG---------------------------------------------------TTGGAGGGCACTTTGGGGT---CTTG------CATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAA-GGAACTGGATAAAAGTGAAAAATAA
s HiC_scaffold_1 138333236 374 - 233722169 CAGCAGCAGCCCCCAGAGCTatggcagcagccagagcccCCACTGGGCTCACACTCACAGCAGTCAGGAGCCTGGTGTCTGTGGTGGTAGGGAAAGAGGCTGGGCCTGTGGTGGCTCAGGCAGCAGCCACCACCCCCAGAACTGCAGCAGCCCCCACCCCCAGAGCTGGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGACCAGAGGAGGGCATGGCACTGGGGACTGGGGTGGGCACTTTGGAGGGCACTTTGGTGGGCACTTTGGGGTGCACCTGGGTGGACACTTAGGAAGGGGCTGGTACTGCTGCTGGTTTTGCTGGCAGGACATCTTGGGATTTAACCActtgaaagttaaaaatga

a score=9761
s chr3            93018367 226 + 160039680 actgctg-ccaccgctgctgccacagcaactgctgccacc-----gctg-ctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCC-----------------CCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGGGCACTTTGGGGTCTTGCATTTGGGAGGG
s HiC_scaffold_1 138196616 247 - 233722169 ATTGCTGGCTACTTCCTCATCCACAGCAGCTGGAGCAGCCTGAGGGCTGGCTGCAGCAGCCAGAGCTCTGGTGTCTGTGGCAGTGGGACCTCTGGTGCCTGTGGTGGCTCAGGCAGCAGCCACCACTCCCTGAGCTGCAGCAGCTACCAGGCTGCCACAGCTTCCGGAACTAGAGCCACAGTAGCTCCTAGAGCTGAAACTGTAGCAGGAAGAGACTGGAGGGCACTTAGGGG---GACACTTGGGAGAG

a score=13365
s chr3            93018367 284 + 160039680 actgctg-ccaccgctgctgccacagcaactgctgccacc-----gctg-ctacagcATCCAGAGCTGTGACGTCGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGC------------------CCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGG---------------------TTGGAGGGCACTTTGGGGT------CTT------GCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAGGAACTGGATAAAAGT
s HiC_scaffold_1 138180377 339 - 233722169 ACTGTTGGCTGCTTCCCCCTCCACAGCAGCTggagcctcccgagggctggctGCAGCAGCCAGAGCTCTGGTGTCTATGGCGGTGGGACCTGCGGCGCCTGTGGTGGCTCAAGCAGCAGCCACCACCCCCAGAACTGCAGCAGCTACCAGAGCTGCAACAGCCCCCAGAGCTGGAGCCACAGCAGCCACCAGAACCCAGGCTGCAGCAAGAAGAGACTGGGGCCTTAGGGGGACACTTTGGGGGGCATTTTGGGGTGGGGCACTTGGGAGGGCATTTGGGAGGTGGCTGGCACTGCTGCTGGTTCTGCTGGCAGGACATCTTGGTAGG---TGAGTAGAAAT

a score=5859
s chr3            93018434 171 + 160039680 CGGCGACGGAGAGAGAATCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAGGGCACTTTGGGGTCTTGCATTTGGGAGGGGGCT------GGCACTGT
s HiC_scaffold_1 138417137 159 - 233722169 CAGTGGTGTTGGAAGAGACTGGGCCTGtggtggctggggcagcagtcACCAC------------------CCCCAGAACTAGAGCCACAGCAGCTCCCAGAGCTGGAGCCACAGCAGGAAGAGATCAGAGGAGGGCATGATGCTGGGCACTGGGGTGGGCACTTTGGAGGGCACTAT

a score=5152
s chr3            93018451 249 + 160039680 TCGGGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGA-GGTTGGAGGG-----CACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTCCAAAGGAACTGGATAAAAGTGAAAAATAATACAAAAAAATATAAGGTCAACAGCTCAAATGTTGCTTTG
s HiC_scaffold_1 138470342 245 - 233722169 TCAGAGCGTAGGGGGGCTCAGGCAGCAGCTGCCATCCCAAGAACTGCATCAGCGTCCAGAACTGGAGCCATAGCAG---GAAGGGCCTGGAGATGAGCAGGGGGCTGGACAGAGGGACAAACAGTTGGAGA----ACACATGGGATGTGGTCTCCACTGCTGCTGGTACTAACAGCAGTACATCTCAGCTGGAGTTGAA-ACAACtttgaagtaaaattaaaatgaatactttcaat--tcaaaatgttattatg

a score=6547
s chr3            93018454 177 + 160039680 GGGCTTGTGGTGGCTCAGACAGCAGCCACCACATCCAGAGCTGCAGCAGCCCCCGGAGCTGGAACCACAGCAGCCCCCAGAACCCAGGCTACAGCAGGAAGAGGTTGGAG----------------------------------------------------------------GGCACTTTGGGGTCTTGCATTTGGGAGGGGGCTGGCACTGTTGCTGGCTCTGCTGACAGGACATCTC
s HiC_scaffold_1 138528510 231 - 233722169 GAGCCTGTGGTGGCTCAGGTAGCAGCTACCATCCCAAGAACTGCATCATCCTCAAGAGCT---ACTACAGT----CTCAGTAGCTGAGCAACAGCAGGAAGAGCCTGGAGATCAGCAGGGTGCGGTTAGGAGAACAAACATTTGAGAATCATTTGAGGAAACACTTATGGGCAAGACACTTTAGAGGC---CACTTGGGATGGGGCTGGCACTGCTGCTGGTACTACTGGCAGGACATCTC

a score=24491
s chr3            93024762  979 + 160039680 TTACCCCACCATCATGTCTCTGAGTCTCAGACCCCTCTCCCTGCCTATCTGACCTCTAGT-----------------------------------------GTGTTGCCCTTCTGTTGAGTACCCAGAATACAGAGCTAAAATACAGCCA--TACTCTGAGAACACCTGCTGAGGGCAACCATGCTGCAGAAAGAAAGCCTTGAGGGTGAGGTGGGAGGACCAAGAAAAGCAGGGTTGGTACCACTG--TCAGGATACCTCGCATAGCCTGGCCCTGAGCTCCAAATGGGGACTAAGAATACTGGTTTCAAC---TCTTTGTATGTC---------------------AAGTCGTGGCCAGATAATACCAGGGGCTTATTATTGATTTAGTTAAAGTATTGGCTCCAGTAGTGAGAAAAGTTAGCTCTAGATGTCAACCCATGTAAAATCATCTTCCCCTTGGAGACCTCAAAGCTCAATTGACTATGCTTACACTCCAAAAGTTAAAGATATTTAATTTGACTTTGTACATCTGAAGCCTAGCTCCAG----AACACAATGCAGACTCAGTAAaggggaggaagagaaagagggaagaaagaaaggaaaagaagaa--------ggaagaaggctagaaaaaaaCAGA--TGGAATATGAGGGACACATAGCATTTCCATTATGCTCTGTCCTATTTCAAGTAATGAAGA--ATGTTGA---TTTCAAAC--AGTGAACCAAA--GTAACTTTTGCTTGACACAGAAAAATACCCATAGATTCTAGCACCGGGACTTATAATTGCAGTTGGAGCTGCTCTTTCTTCACCTCTTTTCCTTGACGTTGGATGCTACACGCCCACCATGCTCACTCCAGCTCAAGGCTAAACCTGTCCTGCCATGCCAAGACTTCAGTG-GCCTGATCAGCCATGCTTCTGCCTCTGAAGCACAAGCAGAGTGTGGCTGAGTCATGTTTCAGGCATCTGGACAATTTCACAGATGCCTGAAGGCTCTGTGTTAATGATGAAATGACCAAGAATTTCCTGCTGCCTTTGTGGCAATCCTTTCCAT
s HiC_scaffold_1 138737383 1023 - 233722169 TCACCTCTCCATCG---CTCTACATCTCAAATGCCTCCTCTGGCTTATATGATCTCAGGTAGCCCTCCCTGGCAGATTCACTGACTCAGATCAGGACTTATGTGCTACCCTCCCATTGAATGTCCACAATGTGGAGCTAGGAAAATCCCAGACACTCTGGCAATACGAGCTGAATGGAGGCAAGCAGAGGGAAGGGGGCATCGAGGCTCAGATAAGAGTCAC--------------TGGTGCCAGGGACCCAAGGTGCATCATGATTCCACCCCCTGAGCCCCAACTGGGGTCCAAGTGTAGTGAGCCCTACACTTCTTCGTGCTCCTCAGCACCCATAGGCTGCCTTAAGTTATAGCTTACATAGGGAAAGGTCTCAgtgtttattaaattaaaatgaccTTTCCAAAAATGA------TTTGCCCTA--------CCCAAA-GATACCACCTTCCTCCCCAAGATCTCAAAGCTCAGTTGATCACATTCATACTCCAGGATTTCAAGAAATTTAATTTGATGTTGTAAACATAAGGCCTAGATTTAGGCTGAGAAGTGGGTAAGCATggtaaaaggaaggaagagaaacaaaaaagacaggaaggagagagagagaaggaaggggaagaaaggaaaaaaaagacagagatggGAAATTAGTGGCAGAGT---TTTCTCTTCCTCCATGTCATTCTTCAGGTAGCAGTGATTctgttgaaaatttaaaaataaataagccagAATGTGGCCTTCACTTAAAG--GAAAAGTGCTCATAAATAGTGCCACAAAAACTTGTACT----GTTGGAGCtgctctttcctc----ctctccttcagcaCTGAAAAC----CTCCCACCATGCTGGCCCCAGCCTGGGGCTGAACTTGTCCAATGGTGCTAGGACTTCCCCAAGCCTGTTCAGCCACACATCTGCCTCTGGAGGACAGGCAGCGTATGACTGAGTTAGGTCACAGGCATCTGCACAATTTCACAGGTGCCGGAAGTCTTTATGTTGATAATGAAATTGCCAGGCATTTCCTGTTGCCTTTGTGCCAGCTCTTTTCGT

a score=59512
s chr3            93026400 3489 + 160039680 TCAAATTCCCCCAAAAGTACCCAACTTCGTAATAACTTAACATCTTCTAAGAACCATCTACCTTTATGCTCCCTGCACCCTCTAAATTCTGTCGC-----------ATGACCATCCCTGAAACTGCCCAGATGTAGCTGCCCCTTAGGGATAGCCTTGCTTTCTTA-ATGTGATTTTCAGGTTCCTACCAAGGACTGTGTTTAGGAAACCTGCGCAGACAGACCCCAGCTACTCCTGCTACAGAGTAAAACTTAGAGAAATGACTGTCATGCTCTGTGCTTGCCGGCTTTCCTTGAGGAATTCAGAGTCTGCCCAGCTCAGGG--TTGTTACTTCCACATGTTTAATGATGTTACTTCC---ATCATTAAAACTCCAAGGAGACCTTCTGAAAGTCTGACCCCagcttcc-------------ataagaacaggtgcctcagc-ttattcatcaca-gtatcctcaaggccagacacag--ctcatagcattcagcaaatagttcttggatgaagaaaGAACCAGTGGAAGAATGAGAGCTTGGAGTCATTGTCAAAGAGGGAGGAGGGCCCACAGGGCCAGTGTGGCTGTGGCACAGCAGGTTCTGACCTTGACTCAGTCTGATTCA-ATTGGAAATTGTGACTGAAGTCACTTCTCCTCAGCATGTTGCCTTGGTCACCTAGGGATGCTTGGCAAACACTGGGTGTTTGAATTCC----TAGGTAAATTAGGTGATGTCAGGCCCTGCCTGAGCTATTATTAGATTTCTCAGATCACCTGGAGTCTATCAGGTATCCAGGATATCTCTTCTTATCCAGAGATTGTTGTAAGAAGTCAGGACAGGTGTTCTAGCCGTAACATGTCTTTTCCACTGGTACTATCT---TAAGTGCCTACCTCATTGACCACATCAGG-ATTGAGGGAGTCTAATGGTGAGTAAGTGGAACCTTG-----TAGTG-----------TTCAAAGGAGTCCATTCAACCCACTGAGTGCCAGGAA---GACTTGAG-GAAGTCTTACGGAAAGATTAAAACCTGATTGATTTCTGTCTGTTGAATCCTCTCCCCCATCGTACCTCCCCCCCGGacacacacacacacacacacgcacacacacTTGAGACAGCTACCTTAAGTGAAGAGAAAATGGG---------------TCTCCAATTTGATGGTTTAATCACTACTATTCTGAGGT-----------TGTTCTGTGAAATCCCTTTGGATGAGCT----TTCTGGTTGTCTGTCAGTTCCTAACATACACTGTAACG-TCCTAGTGATCATG-GTCTTCTGTTACAGACAGAGCTTAGACCCTGGACTAAAC---TTCAGATACC----AAATAGGTCTGACAGTTTTAGATTTATGATGTATTAATAAATTCCA-------GGAGATACTTGGAACATAGTAGAAGCTGAGTAAATATTTGCAGTAAGAAGGAAGTGGAACAGAATGAAAGAAAGGAGAAATGA-------------------AGTTAAGTC---GGCTACTGTA-CTTGAACTAGCTGAGATCAAGTTGGCT-AGAGAGAAGTATCAGCCTGCCTAGACACTCTG--CAGCCTGTGCTTGATGCGTAAGCTAACTTCTCAGACCTCTGCTACCTCATACCAACCTTG--GGACTCTTGGACACAAAAGCTCATTTACTTGAGCAGAAAGTTTGTGGAGTCGAAAAATGTCATTCCGTAGGTGCCCTTTGTGGGACATAACCAGTGCCCTAAAACCTTTTGTTGCCATGTC-TTCAAGCTC----CTTCCCTTCTTTG-GACCTTCCATGAACATC-CTTCCTATATTCACCCCTGAGACTACAGATGGACCTTGTCTCCAAAGTACCAGACTCAAAAGTACTTTGTGCCTC---AGTTACC-AAGGTGCTGTTTCTCATTGGGAACCAGGATTCAGGATACTGAATGGATTCTGTCAGGAGAACAAAACATGAGGACCAGTTTGGAGCTA-CTCATCTTTAAAGT------TGAAACAGTTTAATGGAGTAAAT-GCGGCTAAATAAAATTAAATAGGAAAGAGAGAAACCTACCCTTGAGTCTCAGCTCTACCCTGTCAACATTACAACACTGAACATCGTTTATTCCTCCTTTGAACCTCAATTTTTATCAACAAAATGAATGATTATCATATACT---ATCTAATCATATGACTTCACATATAGCAATGTACTTGGTGAACCATAGAGTACTATGAAAATATAAGC---------TAACAATAATGACAGAAACACAACCAACAAGTAATGAT----------GTGATAAACTTGTGAATGGTATTGTCACTCACATAA-TCTGAAGCTTTATGTGACATCCTTGGTTCTAGAGGCCAGAGAGTAGCAAATCATCTACTAGAGGGGCCTGACAGGTAAGACATGAGCATCA---ATACTTCTGGACTTTGCTGA------TCTAGAAGACAGTACTAGGCACAAACA--GTCCTGGTC-------ACAATATAGCAATAA------TATATCTGACAGCTAATTTTTGTGACCCAGTCTTGAT------AGACTCCTCTGGTGGCTGGAGAATGAGTACTTTGGTCTCCCTAG------CTG----GTTCTGCAGGCCTCCAGGAACCAGACTGTCAGGTGAGACAATAATCTGGGCTTGGGA---AGTCACTCTGCCTCCCATGACCAGTGTAACCTTATAAGGACAAGGAAGAAG-CTGATGAGATGAATTCTACAAACCCACCACAC-TGAGTGGATGTGGTAGAACTGTCTCTCAGGTCTCCCTCAGGTTCACTATTTGGGAACCAATGGTCCATAGAACTGTGGATAATATCCAAA--CACCAACAATACCTC--------TTCTAC-------CAAGTT-------------------------------------ACATCACATACAAAGAGCACATGTAGCTGCTGTTGGCAGGCTCATGGGCTGAGTGGTTATCTCTCAGTCTTCAAGAAC-----AAAGGAAGTAGCATCAGACTGCCAGGCATTTTG-TGGACCTGAAAGACATGCATGGGAAGAACATACAACCCCTGTCCTTAGG---------CCTTGGGTAAAGACAGGGCTTGAGTGGATGGAAGCCTAAGCACACACTTATGAGACAATATGCTAGATGCTG-TTGAAACTCCCAAGATGCCTCAGTG-------GTGGGGATAACATAAAATACTCTGTTCTCCTTTCAGAGACCCATAGTTCTTTGCC---AGGGAACAAATGCCTTCCTAACTAACGGCAGCCTGTCTAGGCAGTCTACCTCTGA-CTTTCTAAGCTAGgagct----agattcccaatgctgacatctgata-ttaggttaccttgggcaaattatttagcttctaggactcttggttt-cttacccataa---------aatTATGCTTCATTTTCTCACTaataaaacaaaacaaaacaaaacaaaaAAATAATTTTCTCTGAA------AATAACAATTGTGTGCTAGGCTAGGGATACAATTTAAGAGCACAGTAGCAAGTACAGAGATATCTGCTGATCTTCGTAACTGAAGGTTCACCAGGACAAATACTGAGAAAGGACATAGCACGA-GTTCAAAGTCTA------------------------------------TGGATCTGTAGAACTACAGGGAGGTGGGTGAGCCTCCT---------------------GAGGTCTTGTGGGCATTCAGCTGGAAAATGGATGGGAAAGTGTTCC-TACACCTCAAAGCACTATATAAATAGCATTTGCCCATCTATCCTGTG
s HiC_scaffold_1 138738617 3555 - 233722169 TCTACTTTCCACAATGGTGCCTAGACTCTTCATGATTTTGCACATTCTAT---CTCTCCAGTCTTGTGTTTCCTTCACTATGTGGACACTGTAGCTATAAGAAATTATTGCCATCTCTGAA----------------TGCATCTAGAACACTCTTCTGCTTTCCCCCACATGCTTCTTACATCCCTGTCAAGACCTGT----------CCTGCCCAGACAGATCCCAGCC---CTGGCTCCTGAG---------ATGGAATGTCT-CCTTGCTCTGTACTCACCTAC-----------------GAATTTCTCCACATTAGAGCCTGGCTGTTTCCCCAT------------TACCCTCTGGGACATCAGTATGGGGTGGAGACCTCCTGAAAGTCTTATCCTTATTTCTTTGCAGAGAGCTTATGGAGGCAGATACCTTGGGGTTATTCACCTTGTGTGTCCTGGAGATCTCTCATAGAGCTCACagcattcagcaaatatttgttgaatgaagaaataaagaatgaaagaatgagaGCTTGCTATCATTGTCATGGAGGGAGGCGGGCC-ACAGGGCCAGCATGGTCACTGCACAACAGGTTCTGACCTTGACTCAACCTGAATCAGGTTGGAAGCTGTGACTGATGTCACTT---ATCAACATGTTGCCTTGGTCTCCCTGGGACACCAGGTAAACACTGGAAGTTTGAATACCTTATTAGATAAACTGAGTGACATCAAGTTCTTGTGGAGCTATTCTTAAACTCCTTAGGTCA-CTGGAGTTTCGCAAAGATCTGATCCATCTCTCCTCATCAGGAG-------------------------------------GCGTGTCCCCTCAAATGCCATTACCCAGGTAAGTGC------CAGGGAGCACAGAAGATCTTGGGAAAATCT--TAGTGGGAAAAGAGACACTTGATTTCTGCTGCTACTCCCCACTTCTAGGCAGCC------ACCTGATGGGAACAAGATAATGGCCTCCAgtggaggattgc---aagttcaaaaccag-------cctgtgcAGTGTAGCCATttagagaacttgtctc-------------------------aaaataaaaaggcctgaggATGTAATGCaatgtggagaaaaaaaagaaaagaaagaaatcactctCCC---------TCTACTCTCCACTCTCCTTGAGCTTATTTACCAATATTCTATGAAACTCCTCTGGCAAGGCCAGTGATCTGAAACTCTGTCAGCTCCTGAGAGATACCGCAGTATTCCTAGGATTCATGAGTTCTCTGGAACAGAGAAAACTTGGGCTCTGGCTCAAACTCTTTCATGTACCAACAAAGTGGGTCT-----CTTTAGGTTTCTAGTTTTTTAGTAAGTCCCAGAACCCTGAAGATGCTTGGAACATGGTAGCTATTCATTAAAT-TTTCtggcaagaagaaaaagagaaggaagaaaagcatgAAGGAATGatagggaaagagagggagagagccgAGTCTTATGACACTGAAGTTTGAATCTGCTGCCATAGAGCTGGCTGAGAGAATAGTGTGAGCCTCTATGAGC-TTCTGGACAACCCACAC-AGAGGTGGAAGCCAGCTTCCC--ACAACAGCACCCTACCCCCACCCTTATCAGCCTCTTGGACACAAATGCTCATCTACCTGAGCAGAAACGCTgaataa--gaaaaat-----------------------------tcacagatgCCTTAAGACCTTTCATTACTATGTCGTTCTAgctctattttttccttcctagTGTCTTCCCATGTACGTCTCTCCCGGGAGCCACCGCGAGCACTGTGAAAGGA-CTAGGCTCAGAAGCACTAAGCTTGGAAGTACTTTGGGCCTTGGAAGTTATAGAAGATCATGTTTTTCACTGGGAAACAGGACATGAAAGACTGAGTGAATTCTTTCAGGAGTGC-AGACTTAAGGACCAGTGATGAGCCATCGTATTTGTAAAGTGGACGATGGATCATTCGAGCAAAGTAAATAACAGTGAAATGACATTGAATATGATGCAGGGAAATCTGCTGTTGTATCCCAGATCTGCCATATTAACTCTGCAAC-TTGGAcatgtttcatttcctttctgaatttcaacttttttc---------------tcCTATATATTAGAAGTTAATGGTATGAGAACATACATAGCAAAGCACTTGGTGAGACAcaaagtattataaaaatatgagctcataataataacagtaatgaCATAAACATAATCAAATAATGATGATTACAATAATCATGGCCAACCTATGAATAGTGTT-TCCCTCGCATAACTCTGCAGTTTTGCATGATGTCAGTGGTTCTGGGGACCAGAGGAGAGCAAGGCTTGCAACAGCCACGACCCATACATGAAAGCTGAGTGTCAATGATACTTCTGGGCATTAGTAGCCCCTCCCTGGAAGATAATACTAAGGGCAAACATTATCCTTGCCCAGGAGTATAAGCAAGTGAGAATGAGATTGAACTTGATAGCTAATCTTTGTGACCCTCCCTTGACCCAGGGGGAGTCCTCTGACTACTGAAGGATAAACTCTCCAGTCTCCCCAGTGAGTTCTGAAAAGTTCTGAAAGCCCTCAGAAACCAACACATCAGGTGGGATGGC-GTTTGGGTTGAGCAGTCAGTCACCAGGCCTCCCTAGAAATGCATAACCTCATGTGGACAAGGAAGCAGACAGAGGAGACAA--CCTTCAGGCCCAGCCTACAGGAGTGAAACTGGTGGAACCAGCTCCCAGGATTTGCTCAGGCTCTCTCCTAAAGATC-------CCATGGAGTTGTAGCCATCAACTAGAACCTTCTACAACACCTCAGGAGTGGGTACACTCAGGAGCAAGCTCGGATTAGAGTAGCTTCACTCGGACCTGACAACAAGAATGCCACATGCAAAACACATCTGAGGCTGCTACTGGAAGGCTTAT---CTATCTGTTAGTCATTCAGTCCTTACAAACTTATTAAATGTAATAGCA------TGTCAGGCATTGTGCCAGACCTTAAAG--TTGCAGGTTAGAAAAACACAGTTTCTATCCTAAAGATTCTTCCACTCTGAGTGATGGCAGGGATGGGGCAGACAGCCACAAAGTTACACACATACATGACAATGTGGTAAGTGCTGATAGACCCTCCCAAGATACCTCCACGGTGGCATGTGGGGATGGGGTGA----------------TGGAGGG---CACAG-TCTCTGCCTGATGGGAACAAAT-TATTTCTCACCAGC----ACTTGT-------ATCTACCCTTCATCTTTCTTAGTTGAGAGCCAGAAAGAATCCCAGTTCCACCATCAATTAGCTAAGAGACCCTGGAGAAGTTATTTAGCTTCTCTGAGCCTGAATTTCCTCAACTACAAAATGGGAACAATTATG----AGTTTC-CATCAATTCACCAAACCCAAAT-------CAAAATTacttttttggagttttttagCAGCAACTGTGTGCTAGGT-----------TTTGGAAACACAACAGTGAGTAGAGATATGGCCCCTGCTC-TCATAAC-AAAGATTTTCTTAGAAAGACATTGAGCAAGGACATGGCATTAGGggcaaagccaaaaaaaaaaaaaaaaaaaaaaaaaaaaccagaaacatgggCTCCTCCAGACTGCAGGAA-------GAGACTCTCACCAACTATATTCTTTTCTGAGAGATGCTCCAGGCATTCAGTTAAATGGTACATATGAATGCACTCCGTAAACTACAGAGTACTATGCAAAT---TTGTGCTAGTCTCTCCTGTG

a score=50365
s chr3            93063751 1192 + 160039680 catcctt-cttcttTTTGGTTTTATAAAATGTAGTTTTATTTTTATGTTACTCTGCTGTTACATAGGGCATAACATTTTCACAAAGCTTTTTTTG-----------------------------------TCCAGCTCTCTAAAGAATAACCACTGGACAAACCAGATACCCTCTCACATGTGCACAAATCTACGTGGAAAAGTACTAAAGTTTAGACTTGGATTTGTGTACTTTATTTCTCCTTTCTAGTATATTAAGAAAGGACATGAATTTTAATTTGC-----------TTATATTCTGGCAGCAACATGTTACTTCTATCACAAGGTAAAGTGAATACCAGAGCTACGAAGGCAGGAGGTGTAAGTGAATTTTTATTGGGAAGGAAGTTGTCAACTTAAACCGCAACAAATGAAAAATGCATAAGGAAACTCCCTGTTGTCACAGGCAGATGTAACCTCCAGAACATGTCACACAGGAGACATTTCAATCTGTGACC--CCAAGTCCAGATGCACTAAGTGCTTTCCCATTCAATCTAACACTAAT-----CCTACTAAAAAGGAATTTGTAATAAGAGCATGGAAAAGTTGCTT-TTAAAAGGAAACCCCCAAGAAAGTTTAGAAAAGGGATGTAGAAATCACGAAGTTATTATTACAAT-TACTTTAAATTGTAGTGCACCACATTTCCAT---ATCTTCACAGTAATATAAAACACAGTCGCTTGCAGAACTGGTTCAGATTACTTAAATACCAGATGTGCTGTCAGTGCTTTACACACGTGTCTGGAAGTTACTCGTGTTTACATGAAATGAAGCTATTGATACTTTTCTACAGCAGTAACTGCACACCAGGA-AGGCGGAGACAACACAAACCAAGGGATGGAGTTTCCCCAAAGCTGCAGTGTCAAAACACTATAAACAGTTAATCCCATACACATGAACGGGCTTCCTTGTTAGAGGAAATCCAAGTGGAATAAGAAATGGAGATGTAAAAAGGTTTTCTTGAGGGGAAGAAAGTTGGTGCCTTGGTTGCCTTTAGTTCTCACCCCCTCTGCTGCATCACATTCTTCTCCTACACTGTCTGATGTCCATAATGTTAAGTTGTCTCTAAGCAACTGCATGATGAGGGTGCTGTCTTTGTAGGAGTCTTCATT-CAGTGTATCAAGCTCTGCGATGGCCTCATCAAAAGCCATTTTAGCTAGGGTGCA-AGCAAGCTCTGGA-CTATTAAGGATCTCATAGTAAA
s HiC_scaffold_1 227408687 1231 - 233722169 CATCCTTACCCCAATCagctttttttaaatatagtgtaATT---GTGTTATTCTGCCATTACACAGGGCATAACATTTTCACAAGATTTTTCTGGGACTATGGTCAATTACTGGCAACACACAAGAGTGATCCAACTCTCTAAGGAACCATTGCTATGTAGACTGGACACCATCTCACATGTGCACAAGTCTGCATGGGAAAGTATTAAA--TTGGACTCAGAC--ATTTAATTTGTTTCCCCCTTCTAGTGTATTAAGATATGTCATATACTTTAACCTGCCAAAAGCATCCTTGGATTCTGACATAAACTAGCTACTTCTATTACATAGCAAGTGGAATACCAAAACTGCAAAGGCAGAAGGTGTAAGTAAATTTTTATTGGGAAGAGAA--GTCAACTTAAACAGCATCAAATGAAGG-TGAATTAGAAAAC-CTCTATTGTCACCGACAGACATAACCTCCATCAAACTCAATACAAGAGGCTTTTCAATTTCTTATCTCCCCTGTTCAGAGACACTAAGTACTTTCTCATTCAAATGAATATTTCTGGTTTCCTATCAAAAAGGAAC--ACAGCAAGAGGGTGAGAAAGTTGCTTACTGAAAGGAAACcccaaagaagagaaagggaagtgATACAGAAATTAAGAATTTCTG--CAGAATGCTCTTTAAATTGCAATTATCTACAATGTCATTGAATCTCCACAGTAATACAAAACACAGTCACTT-CAGAACTGGTTCACATTACTTAAATGCCAGGTACATTTTTAGTCCTCTATGTAAGTGT-TGAAAGTTATTTACATTTATATGGGATGAAGCTATTAATACTTTTCTGCAGCAGGAACTGCACATCAGGATAGCCAAAGCAAATACAAATGAAGGAATACAGCATTCTCAAAGCTGCAGTGTGAAAGGACTAAGGGAGTTCACTTTCATACACATGAATGAGCT-CTTTGCTATAGAAAGTCTGAGTGGAGTAAGGAATGGAGATGTGTAAAAAGGTTCTTGTTGGGAGAAATCCTGAAATCTTGTGTGCACTTATTTCTAAGCCCTTCTGCAGCATCATGTCTTTCTCCTGCACTGTCTTAATTCCCTAATATTAAGTTGTCTCTGAGCAGCTGCATGATGCGAGTGCTGTTTTTGTAGGAGTGTTCCTTACAGTATATGAAGCTCTGAAATAGTTCTGCCA------TTTTTAGTCAGGGTGCATGGCAAGTTTGGGGTTTATTAAGGATCTCATAGTAAA

a score=38303
s chr3            93122250 2114 + 160039680 CTGAGCTAAAGCTCATGTCACATGACAGAAAGGTTGGGCTCCATTAGCTTGGAACCTAATGCACTGCCTCTGTCAGAAT---CACAGGCCCTGACAGAAAAGGCTCTGCAACCTTCTGA---AGTCCTTTTATTTTGCCTATAAAGCTGACTCCAAAGAGTGTTTAAGCATTTAAAACCTATGTTGGTTTCC--ACT----CCTAAACAGGTCCACTCTCACAAGAGGGTGATTTAACATATCCAGATCATAAACCAGGCTAACATCTCAGGGCTTTCACATAATTTCCATTAATGTTCTTTCACTTCTCCACCACAAATGTAAATATCTCTGATAA-AATGAATTATTTAAAAT---------GCTCAAATTCATTTAACAGGAGAAATTTTTAGCACACTTTGTGTGACTTGACCATAGTCACATGACCCAGATGTAACTACTAAGGCTGACAACTTTGATGC-CTCAATTTCAACCTGGTGCTCTCTTATTAAGCTTCTCCGGTTACAAGTGGCCACCTCTGAAGGCTGAGGTGAGCTTATTCC-TGAGTGTATTTGTTTCTCAGTGCTAAGAGGAGCATGGTGAGGAAATGCTCAGAATAAGAGCAATTTGTTGGTGTGGT--ACCACAGCAAGAAGGTCCTCCTGTTGCAATGAGACAACTCCCAGGATGTAAGGCTGTTAGAGG--------------------------TCATTCTGCTTCTTCCTGCAGTGT---------------GACTTTAGGAT-----GGAATGCTCCCCTTGTGACTGGCATGGCAGAGCTGG----CACGTTCAATTCCAC-----ATGGCTCTTACACTTAAACTCC-------CCACCCCAGCAGGCTCCTGTAGAAGACAGGGAGGATCCCAGGAGCAAGAGGGGGCCCT-GTTCTGTCCTCATCCTTAATGAAGGAAAGATAGAATCACCACAAGATGGACTAATTAACACCTGCCCCAAGTTTCGGTTGCTGATTAAGGGCACTCCTCCCTAG-----GCTCCCATGGGGAAATGTGTTGCAATTTACCATAGGTGGGACAACAGCTTTTAGGTCAGTGTAGGGTTAAG-------------GGTCCTCCAGTTGAAATTCTTTTCACATCTTAGCAG-TAAGTCAGGAACAAAACTGGCCTCTATTTCA-----------ACTCATGTCCCATCAAACCAATAAGG--GAGTGGCTCACACAGCTAACCCAGACATCAGGGTATCTCAACCAAACTGTTTCCCCAGGCTCTTCTCCTACCTGAATATCTTTTTATTTCCAATCAGAAAACTCCCCCAAGCTTGAATTCGGAATTGTCTGGCTACAAACTCAGTA-TCAGAGTCTAGTTCCT---------------------TCTGTTTCACCTCT-----TCT-----------CCAAGGCCATGGACTTAGCTTTCACAGACCTGACCCCATTCTCAGTT---CCTTCTCCCACAGTTCACACCTTCTGTAATCACATCTGCATTCACCAGCATTATTTAAAGAA--AGAACAAACAAGTAATAAGATCATCACAGAGGAGGAGTGAGGTTGGAAAGTCCCAATAAGCAAACAGGAAGATGTGTCAAGTGTGCCTGG--------GGCAGTGGCACTGTAG------CAATAGATTGTCCACAATGGC--CTCTGTGGAGGCTGC-ATACACATTCTGCAGACTGACATATAGACTACCTATCCATCCCCATCCcactctccacccatctacaccattacccacccatcatccctgctctttctccatagtgcttg--ctagtctccctcatgttttatttgttgtctttcctgtt---------actagcctttacggtaagctccaggagggcagaaatgcttgcattttgttcactgctgtacccttggcacccagaacagggaataggccatgcagctgcttagtaaaaatacagtgaataactgaaAGTCACATCTTTTATCTCTGACAAGTGAGTAATGGACCAATT------ACACAGACAGCTTTTCAAAATCCT-GCTCTTCTGTGAGAAGAAATGTTCTCTAAATTG---CCTCTTTAATTGATCAAAACCAGGAGGAGATATACAGCAacaccacacacacacacacacacacacacacacacacacacacacagagagagagagagagagagagagagagagagagagagagagGTTGTATGGCAGAAACAGAGACACTTGTGTAG-------TCAG-ACTCAGAATCCATATTTCTT---AAAATCCCACTCATTTTGGCTTAAGCTTCAA
s HiC_scaffold_1 138784086 2140 - 233722169 ctgggccaaaacccgtTCACCATGGAAGCTAGTATGAGTTCAACACCCTCTGTCCCTA--GACATGTGTCTGTCTGGTTGTTTACAGACCCT-ACCCTGAGGTCCTTGCAGCCTTCCAGTCTGACCTTTTCATTTTGCATATAAAG------------GATGGTtaagtctttaaaagtttttacacCTTCCCAGCTGTGGCCTGTGCAAGTCCACTTTGACA-----GTGTCATGATAGTTCTAGACCTTAAACTGGGATCATATTTCAGTGCTTACACATGGTTGCCATGAGTATTATCTTAATTTTTCACAGGAAA-GTAAATGTTCACAATGacaatgaa--gtttaaaaaaaaaaaaaagctca--ttcATTTTAGAGTGGATATCTC-AACA--------GTGACTTGGTCAGAATCACATAGCCAAGAGTCAATTACTAAATACTGTAACTTTACTTCACCCAGTCCTAACCTCAAACTCGTTCATTAAGCACCTTTTTTTATA--------CCTCCAAATCCTGTGATAAAATGGCTGTGTGCCTGTAGTTGTCTATGTATGGTAAGAAGATAGTGAC-AGAAAATGCTCAGAACAAGACCAGTTGGTTGGAGCAGTTGCCCCCAGCAGGGA---CCTTCTTTCCTGCTGAGGCCAGCTCCAGTGTCCAGGGCTGTCAGAGGGCTGTGCCCTTGCTGCTTCCCCAGCTTCATCCTCCTTCTGTttcccctctttctccttctccccagACTCAGAGATCAATCAGGTCATTTCCTCTGTGCCCG-CAGGGTAGAGCAAGACTACCCCCACAATGCCTCTGTGTACAAGTCTGCTACTCAGCCTCCTGTGAGCCAAGCCCCAC---CTACTCTGGAAGACAGC-AGGACCCAGGGAGCAAAAGGGGCCCCTTGCATTCTCTTCATCTTTAATGAACAAAAGATAGAATCAGTTCTTAGTTGCCTAATTAACACTTGCA--GAGTTTCGGTTGCTGATTAAGGGTACTCCTCCCTAGCTGAGGCTCTTATGGGAAAATGTGTAGCAACTTGAGATAAGTGTGACAACAGGATTCAGGTCAGTGCAGGGGCAGTTACATTATCTCCCATTTTTCCAGTTCAAACTCTTTAC-TATCTTAGCAGCTAGACCAGGAACAAGCCAGG-GTCTAACTCATAGCCCTGCACTCTTAGATCACGCcagaccaagaaagaaaagaagtcctCCAAGTT---CCTAAGCCCAGGATCTCACATCCAGACTGTTTTTCCATGTTCTCCTCCTATTACTATACTTTTCTA-CCCCAGTCAGAAGAATCTCCAAAATTTTAACTCCGAATAACCTAGTTGGGAACCTAGTATTCCAACTCTGATACTCAACTCATATCCAGTATTTAAGTCTGACTCTCCTATAGGAATCTAAACTTGACTACTTGGGTCATGG-CATGGCTTTCACAGTCCCAACCCTATCCCCATTTTGATCTCCTCCCA-ATATTATACCTGTTGCAATCCCATTAgaatttatttgaattatttaaaggaacagaaaagaaaacaaataagatCATCACAGA------------CTGAAAGG-------AAACTAACAGGAGGAGGTGTCAAGCTTGACTGGAGGCTCCAGGCAGTGGCACAGTGGTGGCATCATCAGGATG-CTGCGGAGGCAGCTCTGTGGAACATCCTGTGCATATTCTAGAACCTGACACACATACCTCCTGTCCACTCTCATGCCACCCTCCACCCA-CTGCAAGCTT-CCTACCCCTCATTCCTGCCTCTTCTCCACAGCTGTTGTACAGGTTTTTCACAtgcttcatttattattttgccTGTTGTTACAGTCACTTGACCACAAGGTAAACTCCACAAGGGCAGGGTTTTCTG--GTTTTTTCACTGTTAT-TGCAGAGATCCCAAAACACA-----------ACAACTGCTTCATAAAAACATGTTGAATAAATCAGAGTGATTTC------CACTGGCAAGAGGAGCATAAGCAAACTTCCCAGACACAGCCAGCTTTTTGAAGCCCTAGCCTTTCTCAGAGAAG-------CCTTGGATCAAGTCCTCTTAGATCTCGTGGAACCAAGAGGAAGTTCCCAGTTCCCCCACC---------------------------------------------------------------------------AGAGATCATGCTGCAGGAGCAGAATCTC-TGCCTAGAGGAACATCAGAACCCGGGACttatacttctttaaaaaatccCACTCATTTT-GCTCAAACTCCAA

a score=47917
s chr3            93127567 2187 + 160039680 AAACTGCTGTCAGAAACTGAAAACCGAGGTACCTCCACAGCAGCACC--CTAGAACTAGCATCAA----------------GCATATTTTA-----CTAGGCGGACTATCCCGGGTATAGCTTGATTCTGTGTTCCTCCATTCCTGTAT--tccaccatccatccatccatccatccatccatccatccttccTTCTCTCCCTCCCTGCATTCTATCACTTATCTGTCATGAACTTGATGACTTACCATCCATCAGTCTCATCTCTCTGTTTATCCACTCACCCATCTCCCCTTCTTTGGAT--------------ACCCCTTTACAAGAATTAGGGGGTC---------AAAATAATCTGAGCCTTCAGGGGGACTATTAATATCAAAGGCTAAGTTCCAGGTTCTTAAATGAGGCCAATGATGCAACAGAATTGATACCCAGAAGACGTGCTTCTCGTTGCTTCCCA---GTCCCTGCAGGCAGTTCTAAATCTGGTTCAGTCACTGGGTGGCCTCCCAAAACCTATCTTAGGAACAATAGACCTCAATAATCAGGCCACCATTTGTCATCAAGGCACACCCATGTCATAGCAGCACTCTGCTGATTGGCTAAAACAAAATCTTCAAGGCACTCCAAGCATTTACCACCTAAATCTGTCACTTACCGGTGCTGTAGGTGGAGTGGGAAAGGCTGTGTAGTTTG-ACTTGTCAAGTTGCCAATAAAAACCAGTT----TCTGTCGAGTGGTGAGATTTCATTACCCAAGCCTGGAACGTGACCCTC---ATCAAGTGCTTATTGAAGTTGCTGAGAACTCACCCCACGCCAGATCTTCTTA-CTTACATCAGATCATCACTG--CTTAGGGTCATCCCTAGAGTGGGTCTCAAATGGAGTAATTGA-CCTGCACTGACACAGAGACTGTGATATTTTGAAAGAGGAAATTGaa------------cctctaatgaatttgtgctctgagtgaggtgttag----------gaatccagggaaaagcc--caacatctattgcctttgcaaagcacagagtctagtggagacaacaggcCTCGAAAAGGTGAT--------------GGGCTATCACAGCAGGAAGGTTTGGGACTTGTGAAAACAGCCTCATCTGACTTGAGAATCCCAGCGG--TTTGGAAGAAGGCAAGCTGGAACTGGGCCTGGACAGCCCAATCAAACACACCTGAATCTTGCCAGACAAATCCAAACTAAGCATGGAGGAGGGAGGATTCCATGCTGCCAGGGCAGCTCACTGCTCACAGTGGGCCTTGAGGTGGCTGACACCACTTTCAGATTTGAAAATGTGAGCAATAGAAG-ACTCCTT-ATGTTTCTGGTTAAACACATTTTAATCCTTCATGCTGCCAGGTCATGGCTCCAACTTTTTCAATTTTCTTTCTCAAAACAGACTCTCGCTCCAGCTGATCCTGAACACACCCCTCCCAGCCACCCCCACACCTATTACACTCTGTG------CTCTCATGCCACATTTTCTATGAAGCTTCTCTAGAGTGGCCGACTCCCCAAACCATCTCTGCTGTACTTTACATCTGACTCGATTGCCACCTATGGCAAGCTGCATTCCGGGTGGTTTGTAGATCCTGTGACCAGTAACCTGAATATTTGGACCCCCCCCCCAAGAGCTCTCAAGGGGCTTGGCACCCAGTAGGTCCTCAACAGCTAACTGCTGTGAGACTGGCGCT-----------------------TCCAGAACT--TATTCACACTCAGGTGACCCTGCAAGGCTCAGCATGTTGTCCCGGCAGGGAGCCAGTAGCTGACTTGGGAAAAACAAGTGATGTGGAATCTGGCAGTGTCCCAGCTATTCTTCCACGTAGCAGCAGCCACCTCCA--ATACACAGCATTTTCTAATGTTTACAGGAAACTTCTGAGCTCACCAAGCACCTGTCCACAACCAGGCACCCAACACGTAAGGGTTGAACACCCACTGTATGGAAGACACCAAAGCACCATGAACCTT-TACTGGCTGGAAAAAGAAGCAGGGGTATCTTACTGATCACTAGGAATAATATACAGCTGCTTCATTTTAGTTCATTGGAAGTGCAATGTAATTCATATTATTCTCATTATATTTCCCTGACTTTCCTATAGTGGCTCTGTCTTATTCATGCAAGCAGACATTTAAAAAAAATAATGTTTTAAAACGAACTGAGTGGATGCACCAAAGATGAAGACATATAACAACTGTGATTTCTTGATC----ATCAATGGGATCTAATTCACTATATAGTCAGGCAGGTA
s HiC_scaffold_1 138790872 2054 - 233722169 aaattactctgaaaaattagaaac--aggCACAGCTATGGCAGCAGCATCCAGCACTACCAACCACCCTTGTACCAGGTGGACACACTTTATGTCTCTAGGAGGACCAC----AGCACAGGCTGGCTTCCCAACCATCCATGCACACATACTCCATCATTCATTTATCTACCCATTAATGTACCC-------------------CCTGTTT------------------------------------ATCCATCATTCACATCCCACTGTTTCTCCA--------TCTACTCTTCCTTGAAAGACATCACCACAAAACTCCCTGACAGAaattagagattttattttttaaaaaatgtcccaCTCCTCAGA-----TATTAATATGGAAGGTCAAAGTCCATGTCCC-AAATAAGGCCAATGGTGAAACAAGACAAGAAGCCAGGAGACGTGCTTCTCATCACTCTGCCTGCATCCTTGCAGGCAGCTCTGATGCTGGCTCAGACACTGGGCTGCCTCCCAACACCTATCCTGCGAACAATAGATCCCAGTAATCAGGTCAGTATTTGTCACCAGGATCCACCCTTGTCACAGAAGCACCTAGTTAGCTAGCTGGAGCAGAATCTGCAAGGCATCCCAAGCATTAGCCACCTGAATCTGTCACATACTGGTTCTGTAGGTGGAATGGGAGAGGCCATGCAGTATGTGCTTGTCAAACTGCCAGAGGGAACTTGTTCACATCAATTCAATAATGGGCCCTCATTTCATAAGCTTTGATTGTGATCTTCTCAATCAAACACTAATTGGGGTTGATGAGTAC-AATCCAACCCGACCTTTTCTTATCCTGCATGAAATCATCACTAATTTTCTCTTCATCCCTAAAATGTATcccaaatggggaaactgagtctgcTCTTGCAAACTGACTATGATGTGTTCAAGTAACAAGCTAAAAGAACTAAGAATCATCTACTG----TGTGTTCTAGGTAAGGTCTTGATCTAAACACTGGATTTAGGGATAAGCCAACATCATTTCCTATGTGTGAGGAGCATATAGTCTAGCTGAGAAAATAGACCCTAAGACAGTGACAGTTAAAGTGGAAAGGACTAGAACAGCAGTAAGGACTGGTTACAGGGAGAAGAGCCTCATCTGTCTACAGAATTGCAGAGGCATCAGAAAAAAGGCA--CTGACGCTGGGCCTGAACTGTGTAA--------GCCTGAGCCTTGCTAGAAACCGCACACCCAAGCA-GAAGCAAGAGAGGTGCCTTTTTA-------------------------------------------------TTGACATTTGAAAATGTGAGCCGTAGAAACACCCCTTCATGTCTCTGG---AACACACGTTAGGCCTTCATACCTCCAGATCACTGCTCTCCTTATTTTA---------CCAAGAATAGCTTC--------------CCTGA--AGGCCTCACCCTGCCA----CATTTCACTTATCCTTTGAGGCCCAATTCTCGGGCTGCTGCTTCTGTGAAGTCTCTCTGGATTAATC--CCTCCAGGGCCATTCC------------CCTCTAACTCCAGGGCTGCGCATGGTAGGTTGAACTCCAGTTGGTTTGTGAATTCCATCCTCAACAACAACATCATTTTATCCCC-----------------AGAAGGTTGG---ACAGATGAT--TTAGTATACAACTGCTGAGAGCCTAACACTCTGGGTTGGCTCACATCACACGGTCCAGAAGTACCTTCTAGATCCATTT---CCTGCAGAGCTAAGCCTGTTGTCATGGCAGGAA--CAACAGCTAATTTGGGAAAAACCAGC--TGTGTAAT---------------------------------ACAGCCACCCACAACATATACCATATTTTCTAATGTTTACAGGAAACAT-GGAACTCACTGAGCACATGTCAACAATCAGACACCTAACAAGTATTGACTGAGCACCCTCTGTACACAAGGCACCATGACACCAAAGACCCTGTAGTGACTGGAAAAAGAAGTGGGAAGATCTTAGTAGTCATGATAAATG--ataaagttgtttatttttagttaattGAAAAGATAATTCAATTGACATTATGCTCATTATATTTTCCTG---------TAATAAGTGTATATTATTCGGAtagccagatttttaaaaa----------ttaaaataaa------ggatgATTATTGTATGCACACAATCAGTGGTTAAAATTTATTGATCAATTACCAGTAGGATCCAATTTCTTATATGCCTAGGAAGTTA

a score=12759
s chr3            93139486 1492 + 160039680 ccTCAGCTTCTAGTTTAATAACAATA-AAAGGTCATTTCTGCCTACAGATATACTGAGAAGAGAAAGATTTAGAAGAAGTAGGAAGGTCTCAAATTCTTGGCTAGTGACATCAGAGGAAAAGGTTAAAATCCACTGT-----TGTGTAAGATAATACATGATAGTTTGGGGCTCCACATCTCAGTCTTGGACAGCTGCCTC----AAGTTTTTCCCTTTTGTGATCCAAACCCAACTCCTTATGTGA-TCTCTCATCTAGATCCTTGATCCCACACTATTCTGCGGCTGTGAAAGAGGCATACATGTAGACAAGCACCCTTTAGCAA-----------------CATAACTCAGTCCAATCACAAGCCACCGTCAAGGCAAATGCAAAGAg-------------aagcc---aatggagccaaattcacagttctggtttcatctcttacccaaaacaacagagcgactttggaaatga-catttttctttattgaaacttaagtctttcttttgaaacataggaatagtaagaacctcccagtttgtgagaaCACTTTGGGATCAGAGAAGTG-AGGTACCAGTGTGTTAAAA-TTATACTAATTCAGTGTTCACTACAG----TCTGCACAATGAACAGCTCCTGAGCCTCACTATGAGCCCCAGTCCATTGTCAGTGAAAGAACTTGAGCATAACAGATAAACAGGGCCTCTTCCAGATCCCAGCAAATAGACATACTTCCTTTTCTGGGTCTTGAAATAGCCATGTTCTGGACATCCATTTCAATCAGAATTTTGCCTCGAGGGTGCAGGCTTGGTTGGACTACTTAGTTCCTTTGACTGCTCCTAGAA-CCAAGCATTGTCGTCATCCAGTCTTCTAGGCCTTGCCTGGAACCAGCTTCCTTCAGT-----------CTCAGATCCGGCAGTCATG--CTTATGGTTGACTGCGTAGGGACAAATGACTGTTGTC-TGGATACTGCTGCCAGGTCCATAGCATACATTTGAAAACCTCATGGCACAATCAGGTATCATGT-----TTACGTACACAGCACTAGTTGGCAGTCATGT-GATCTTTGGGCCCTTTGGTATACTCGGAAAGACCTCCAAGCATCTGGAACTTCTATGTCGGCAATTACAGCCCTGAAGGGCTCAGATGGAAGGACCAGGCACCCAAACACAATC--------TCCACAAGTCCCA----ATCTGCTGCTAATGAGCCAGGA--TAATTGTAAGT---TGTGTCTAGTTACGGAGACACAAAAGATGTAT-------ACATTGAATAATATTTCT------TTCTCATTAATAATTATAATTTCATTTGAGATTAATTTGCAGATAATGATACCTATCACTAACCTTAGATTTTTATTATTCTGAAATTGTGCTATTGTACAAATTATATATTTGTTG------CTTTTCCAAGTATTGAATGTGTGAGCCATGTGACTATTAATCTCATGTATATTCTTCATTTCTGCAATCAAAAGGCAGAAATGCAATTACTTTAGATGCCTAGGCATGATTTAGGGCTCATCAGTTTATAATGTAATTTCACATTTAGTGTGTGT
s HiC_scaffold_1 138805126 1326 - 233722169 CCTCAGTTTCCATTTTGACAACAACACAAAGGTCA------------------------------------------AGGAGGGAGGCCCTAAGTTCT-GGATAGTGACATCAGAAGAAATAGTTAg--ttgactgtgtgtgtgtgtgaga-agcTCATAATGCCTCAGGGCACCACATCCCTCCTTTGTAGAGCTGATTTTTTGAGAATCTGCTTTTCTATGAAGCTAACCTGATTCATGCTGGGCCTCTTCCTGTTTAGTCCTTATTCCAATACTGTTCAGGGCCTATCGAAGAGGTCTGTATGCTGACAGAAATACTTTACCAAGTACCTGTGGGTATTCATGCACCCCACCTCATCCAGAACCCACCATGGAGGCATCTGCATACAGCAAGATTCTTAGCAAGCCGGGAATGAA----AAATCATAGATCCTATC-CATCTCT-GCTCAAAAC-------------TGTCAATAATCATCTTACCACTTTAAAACTAAGGCCCTTTTTATGAAATACTGTA-TAGTAATAATT----------------AACTTCAGCGTGTGAGAAGTGGAGGTACCAATATCTGAGAAGTCCCTTTAACACAGTAGCTGCCACATAATCTATATACAACTAATCGCTGCTAAGACTAA--------------------------GGTGAACTTTAAT------------------CTCTTCA-----TCAGCAAATGAACATA--------------------------------------------------------------------------------------------GCTTCTGTGACAGTTCTTGGGAGTCCAGCATTGCCACCATCCAGCCTCCTAGACCTTGCCTGTGACCAGCTAC---CAGTGAGAACCATGATTCAGA-CCTACAGTCAGGCCCTCCCGGGTG--TGCAGAGGGGAAAGTGACTTTTTCCTTGGCCACCACTGCCACTTCACcaacatatatttgaaaa-ttaatagCACACACAGGTATCATATATGTACTCTATATGCAGGAATGTTTGGCAGACTCATCAATTTACAGAAGCTGTAGAATAACTGAAAGGGCCACCAAGCACCTGTGACCTCCAACTCAGGAATCAGGCTCTTCA--TACTCACATGGGATAACCAAGTCCC---AGGCAATCAGTGAGCATCTGAGAGTCCCATGACATCTGT-----ATGTGCCAGTAACTAACATTAGATTTGTATTTCTATAACCTAAAACAGTAATGATACATAATAAGGAAGTTAAAGGAAATCTGTGATAAATTctcttaaggaaaaataaaattaacaaatatttgttaGTGAATAATCAC-----Tcacttattttctaattt--ctatttttgaatt-ttcCAGGGTATGTGTCA-GTATTTACtgataatactttttaaaagatagaatgaaTAATCCATTTAATGATTAATCCCCTTAACTGTCCCTATTTT----------------AAATAACAATACCCTACAC---------TGTTTAAGAGTTCATCAGTTTACAATTCATTTCTACAACCAGGATATAT

a score=124891
s chr3            93144359 5574 + 160039680 [encoded data, 5972 characters]
s HiC_scaffold_1 138810126 5318 - 233722169 [encoded data, 5972 characters]

a score=4675
s chr3            93146783 179 + 160039680 TTTTATATTTTCCAGCATAGCTTCAAAGATGCCTCAGTTGCTGCAAAACATCCACGGGATCATCGAAGCCTTCGGGTGCTATGCCAGGTCAGAGGGTGGCTGCAAAGTACTCACGAGGC----AGGAGTTGAAGAGGCTCCTGGAACATGAGTTTGCTGACGTCATAGTGGTATGATATGTAG
s HiC_scaffold_1 139035789 177 - 233722169 ttttaggtTTGCC--TATATTTTCCAAAATGCCTCAATTGCTGAACAGCATACTCAGTGTGATCAGAGTGTTCCAGGAATATGCCAAAGAAAATGGAGACTGTA----CCTCACTATGCAAAAAGGAGCTGAAGCAGCTGCTGTTGACTGAGTTTGGAGACATCCTACGGGTAAGATTCATAG

a score=4683
s chr3            93148025 139 + 160039680 TTGGCTTCATCTCTCCCCCAGAAGCCCCATGATCCTGCAACTGTGGATGAAGTCCTGCGCCTGTTGGATGAAGATAACACAGGGACTGTAGAGTTCAAGGAATTCCTAGTCTTGGTGTTTAAAGTTGCACGGGCTTGCT
s HiC_scaffold_1 139083418 138 - 233722169 ttgtttttatcttttcat-agaGACCACATGACCCTGAGACAGTAGAAACGATCCTGGGACTTCTGGATCGTGATACTAATGGAATTGTTGATTTCAATGAATTCCTCCTGTTCGTTTTCAAAGTGGCTCAAGCTTGCT

a score=13229
s chr3            93148370 567 + 160039680 CAGAATCAGGACAGCTACCCTACACAGGTCAGCAGTCATGACAGGCAGACTGAGTCTCAGACACAGGAAATGATA--AGCCAACAAACACAAGTGACAGGACAGGTGGAGCAGAC--CCCAAGAACAGAAGACAAGAGTTGGACCAGACAGAAGAGGTCAGAGAGGCAACCACAGAGTAGCCAACAGACAGATGAGATCACAACTG--GATCTACAGCTCAGAC----CCAAGCAGG------TAACTTCTACACACAGGGGTCTACCTGTGACTATAACAGAGGAACTAACAGCCATCACCAAGACAGAAGCCATG-CAGACAGA--GCTTCTACACAACACTACCAGACACAGGCAGGGTCTCATACTCAGATACACACACAGATGGTAGAACAGGCCTGGGGGCAGCAAACAGGAAGTGATAGCATCCAGACACAGGGGTCTATCTATGACCAGAGCACTGAGACTGTGATTCATGGCCAAGACAGGAACCAGGCAAGCCAGAGTGTTAAAGAACACCACCAGGCACAGGGAGAGTCATATATTCAGACACATACTCAGACAATGGAACAAGGCAGGAGCCAG
s HiC_scaffold_1 138814088 549 - 233722169 CAGGTGCAGGTGAGCCAGCAGACACGAGGAAGCAGTTATGTGGAGCAGACCCAG-----AAAGTGGGAGACAATGCGAGTCATCAGATA--AGAGACAGGA--GGTCGGAGAGACAGTCACAGACCAGCAAACA------------GACAGGTGAGATCATGCATGGAACCAAATCACAGA-AACAGACAGGCACAACCCAGACTGTGGA---ACAGGATAGACATCACCAAACAGGAAGTGCCAGCATCCAAACACAAGGCTCTGCCTATGGCCATACCAGACAGGCTGAGGCCCATAATCAAGACAAGAGCGAGATCAGCCAGGTTGTGGCAGGAGGACACATCAAAGCACAGGCAGGATCACATAATCAGACTCAAACACAAACTACAGAACAAGACAGGAGCCATCAGATAGGAAGCACCAGCATCCAGACACAGGGGTCTTCCCATGGCCAGATAAAAGGAACTGGGTCCATTGGTCAAGACAAAAACCAGACCAGTGAGGTTGTGAAAGGATACATGCAGTCACAGGCAGGGTCATACAG------------CCAGACTGTGGAACAGGACGGGAATCAG

a score=6943
s chr3            93148898 203 + 160039680 CAGACACATACTCAGACAATGGAACAAGGCAGGAGCCAGCAGGCAGAAAATAGTAGCACCCAGACTCATGGGTCCATGTATGGCCAAAACAGAGAGACTGAGATCCATGGGCTAGAAAGCAGTCAGGCAGAACAGGTGGGGAC---AAGACACTACCAGACACAGGCAGGATCATATACCCAGACTT------------TGGAACATGATGGGAGCCA
s HiC_scaffold_1 138814254 217 - 233722169 CAGGCACA-ACCCAGACTGTGGAACAGGATAGACATCACCAAACAGGAAGTGCCAGCATCCAAACACAAGGCTCTGCCTATGGCCATACCAGACAGGCTGAGGCCCATAATCAAGACAAGAGCGAGATCAGCCAGGTTGTGGCAGGAGGACACATCAAAGCACAGGCAGGATCACATAATCAGACTCAAACACAAACTACAGAACAAGACAGGAGCCA

a score=6813
s chr3            93152181 133 + 160039680 CTGAATATCTTCATCACAACCGCTGACTATGAACATCTTACTGAAGTTAATGCTAAACGCAAACTTGAAACTTTCTATGAGAAGCGCATGGCCACAGAAGTCGCTTCTGATGCTTGGGGTGAAGAATGGAAGG
s HiC_scaffold_1 154206195 133 - 233722169 CTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGG

a score=9575
s chr3            93152311 175 + 160039680 AGGGTTATGTGGTCCGTCCAAATCAGTGATGGGGATAATAAGCAAGGATTCCCCACAAAGCAGGAGGTCTTGACTCATGGCAGAG---------TGTTGAGTA----GAATTTTTGTTATAGACCAAGGAGAACTGGAAAGAGAAAGC-TAAGTTTGTTTGGAGAAGCACTGTGGATACCAATCTGAGC
s HiC_scaffold_1 154206729 185 - 233722169 AGGGTTATGTGGTCCG----GATCAGTGGTGGGAACGACAAGCAAGGTTTCCCTATGAAGCAAGGCGTCTTGACTCATGGCCGAGTTCGCTTGCTACTGAGCAAGGGGCATTCCTGTTATAGACCAAGGAGAACCGGAGAGAGAAAGCGTAAATCTGTCCGAGGTTGCATTGTGGATGCCAATCTGAGC

a score=7410
s chr3            93152625 264 + 160039680 AGGTAAGAGGCCCAAGACCAATGCACCCAAGAGCTAGCATCTTGTTACCCTATATGTCCTGCAACAAAAATACTA----------ATGAAGAAATAACACACTAAGGAAAATAAAAATGAGGCTGTATAATATGCCTTATTTTTGGTCAAGAGAATTAA----------------GAAGC-------------------------------------------------ACCCCCC------------------------------AAAAAGCCAGGAACAGATTGCCAAGATTTTTCAGCCATTCTCACTGAGATCTTCTACT------TCAGAACTCAGTCAAAACATAAGATCTCTCAGGGTAACAAATAAA
s HiC_scaffold_1 154208414 372 - 233722169 AGGTAAGAAACCCAGGACTAAAGCCCCTAAGATTCAGCGTCTTGTTACTCCGCGTGTCCTCCAACACAAGCGCCGCCGTATTGCTCTGAAGAAGCAGCGtactaagaaaaacaaagaggaggCTGCAGAATATGCTAAGCTTCTTGCCAAGAGAATGAAGGTGAGTGAGATAAGGGAGGCCATGAAACCAGAATGGCTAATTTGCTGTTTTCACTGGAATAAAAGTCTGACTTCTTCTGTACTTCTGTTTTTTAGGAAGCTAAAGAAAAACGCCAGGAACAAATTGCCAAGAGACGTAGGCTTTCCTCTCTGAGAGCTTCTACTTCTAAGTCTGAGTCCAGTCAGAA-ATAAAATGCTTAA--GTAACAAATAAA

a score=10413
s chr3            93156577 581 + 160039680 ATTGGCCACAGTATAGAAAGTGGCCCTGTCCTCAAGGATACTCAGATGAAGCCTTT----GAAAGTCCAGCAAGCCA--------------TGCAGCTGGAAAG--------ACTGTCCCCTAGTGACACTTAGGAATAGCACCACTAAAAATTTGCTTT-------TTTTTTTTTCCTTGAATAGGA----------AGAGGAGAAGCCCAGCAGCACAGCCTT--TAACTGGAGCACTAAAAG-GAATGGTCTGGAAGCCTC--AGGCAAGCTCCACCTCCAGTTTCTCTGAGCAATGGGATTTCTACTGAGTTTCTCTAT-TGAGAAGTGCACTTCATGCAGCCACTCCCACTGCCAAATAGTAGCCAGTATCTGTACAGCCATATCCCCTGCAAGGACCTCAGTACCACTGCATAGGGATGGTTGTGAAAGTGACTGATTTTTCTCCCCTAGGGAACATGTGCTTAGTGAAGCTTTTTTAATGA---GCAGGAAGGTA---ATTCTATGGGTTTCTTTCCTCGAGGTGGAAAATGGTGATCTATATGTTTTCCTCAGAGGTCTTGAGAGCAAAGCTCTATCC---TATTCATGCCATGTTTATGTGAAAAC----TAAATTTGCTTCCTAGCACTAATG
s HiC_scaffold_1 138829167 634 - 233722169 ACTGGTCATGGTGTGTAAAGTGGCCCTGTCGCCAGTG-TACTAAAGTATAACCTCACTCAGAAAGTCCTGCAAATCAGAGCTTCCTCCTACTGCAGATCGGGTGTGCCCATTACTGCCCCCTGGTGACAGTTAAAATTTATGCCTTAAAAGACGCTCCTGGAGAAAATAGGCTTTTCCTGGAATGGGACATATTTGACATGGAACAGGCTTGGTAGTGTGGCCTTAGGGACAGCTGTACCCAGAGTAAATGGTCTTGAAACCTCTAAAGCGA---CCATCCCAGGTGGCTGTGAGCCCCTG-CCTGATAGTGTGTTTCAGTGTCTGGGAGGTACCCCTCACTGAGCCACCCCCACTGCCAAATGGCTCCAAGTATCTGTTCACCTGTATCACTTGCGAGAGCCTTGGTTCCAGCTCATGGAGATGGCCTTATGAGTACCTGA-TTATCTCCCTGGGAAGGCACATTTCTGGTGCAG--TCCctaaagaaaggcagagagataAACATCCTATAGCTTTCCCTCCTTGGGACAGAAATTGGCAGTCCGTACATTTATCT-GGAGGCTCACAGACCAAAACTAGGGCCACATACTCTTGTCCTAGCCTCACAGAAACATTGTGGATCCACCTACCAGCCCTGATG

a score=57681
s chr3            93157792 2713 + 160039680 ATGGCAACACATGCCATTAGCAGTCTCTGCTATTCTGTCTGGAAAAGAAAAGCATACGAATCAGGTAATGAGGTAGCCAGTTACTGAACTAGACA-------------CAGATTAAGTTTTATGTCACCTTGTATGGAATACACAGGAACTCA-GTCATTGCATGATTTTAATTGCCCT-AAACAATGAGACACAGATTTAGCTACAAATGATTATACATTTGTCTCAGGAA-----AATCACAAAAGACCCAAAATAGAAAGAAGCACAAAAATGCACTATTgctgagcagtggtggcacacgcctttaatcccagcacttgagaggcagaggcaggcaaatttttgcgttcgaggccagcctggtctaaggagagagttccaggacagccaaggatacacagagaaaccgtgtctcgaaaaaCAGAAAAAAAAAA--------AAAAAACCCAAACACTATGAAGTAAAAAAATGGCCATTGTA-TTTAA-CCCTTCCAGACTCTCCTCTATAC--AAATCACCATAAAAATAT----------------ATCCATTTGTGCATATATACATGAGTACCTTTAA-TGATACATTTATGTGTCAACTATATAAGTTATATCTGCATGCAAACTACACTTCCATATCTAAACACATACACAAAATATAAACGTGTACATTCATAATTTGTAACAG--TAACTTCCATAGGCTATGTCCAGTGACTTAGGGCAGGCCACGTCAGCAGAGTTTTTGGTTAGGATTATGCATTATGGTGAAAGGTTATTCctcagttca------------gtttctcacaagaggtgtacctctgatcaaggtatttgtcttaa-tagctttgtctctattgtggagaaaataatggcacctctacataggtaggtgtgagaataaatttatacacttaattcctagcaaatgacatggtaagcctttaaaaaaAATGCTAAGAATTGAATGAAGCATTCATGCCAGCCATTCATAAATCAAAAAAAAATGTTTTAAGA-AGAAAAAT--------GTCTAATCAGATAAAATTTGATCACTACAGAAGATTCTCACAGACTACAATTTATTCTCATAAAGATAGTTTTCACTTTTAGCAGCCGTAATGACCA-TAGTTAATTA-GAGGATTTAAAACACAAA-----AGCCAAGAACTAGGGATGAATCAGTACtattttaaatagtatatttatttatactattatacataaattatattatctataaataGGTGCAACACCAACTTTTCCTGTTTCCCTCCCAGGCCTCTGTCCTGTCCACTGACCCCAAAGTGGGTTTTCTCTGCTCTGTCTTTATTATTCTCAAGATCAATAAGCTGTTAGACAAGAAGA--AGCAGGGCAGTAACTCTAGTTGGCTTACTTTTCCACAGGATGCAAGGTGATAGACGGAGGATGTGGGCAGCTGGAGAGGCCA--GTAAATCATTT-GCATTGACAGCATCTGACTT-----CAAATA-----CAATCTGGGTCATATGG-------ACAAGAAAAATCTTTTTTCTCTTTTTGCTTCATAATACATTTCATCATTTAAGTTTTCGTTATTTTTTTTCAAAAGCAATGCCATCACATGTAGAAGAAAA-----------------------TTCCTGAACTcacgcacacacgcacgcgcgcacacacacacacacacac---------------------------------actcacacacacacacacacacacacaGTGGGTTTATTATAACATGAGTCAGGTCTACTGTTCTGTCAAGGAGCTAGATGTAACTAAGGCACAAAAAAAAAAAAAAACACCTTGAGGTAACCAAGGA-CCCTGACCTGGGAC---AGCCCCTGTGCCCTCTGCCTGTAGACCTACCTAGACTAACCCTGGCTTGATAAAATTCCCAATGGCTACTGAATAGCCACCATTGATCCTACAAGTGACTGTTTGGGCCACCTCTCCTAAGGCAGGGAAGTGTTGGTAA-AGGGACTCTGCTCACCACAGCCATGAACATCCCTCCTCAAA-CAC---CTGCTAATTCATCAGAGACATTTTCC------CAGTGCTTGTTATTCACAGCAAACACATAGCTGCCCTTTTAAACTACCTAACAAAAATCTACCTATTTTCCATGACACACCAGTAAGGAACTCACAACTCCATTTGGCATCTATTATTTCCTGATAAGATCAGTAGCCATACCTACTGCTGAAGTATCTGTTTGTCTTATGAATGGGTGTCATAAAATTTAATTACACCACCTTATCCACAATCATTGAAAAATTAAGTCACACCTTCACATGTATGGGGTATTAGTTGTCCCCAGACTAAATAACAATGCAGGAATCTAAAGCA--AACCACAGATTTATGTGTTTTCCTTCCATGACCTACCTAGTCTTTCTCACTTAACTGGTTCTGGTTTCCTGCCTCCCCCCCTGGATATTCATATCAGATTTGTTTGTTGGTTTTTTCCTGTTGTAGGCCCTCACGCACATACTTCATCAAGGCAGATGTGAGGGTTGTTGGTGGCTCAGCTGGGGTTTGTGGCATCTGTTTAAATCAGTTTATCCAGTTCAGTGACATGCCATGAGTTCTAAACCCACACCTTTTCCCAGGCAAATTTGATTCATCACAAGATGAAGGCACAGTTTATAATAACCACCCCTAACCCCCCCCCCCCACACACACACACAGCATGGCAATCTTTACCTCTCCCCAAATCCAGGAACTAATGATAAAA---------------TTCAGTTTTGACTTTGGAACATTTCTACTT------TCCCAGGGTACAGATCATCTCCTaagaacatgatgctatagtggacagacgtcaaagccagtgt
s HiC_scaffold_1 138830058 2593 - 233722169 ACAGTAGCACATATCGTTAGAAGTCTCTGCTCTTCTgtctggaaaaggaaaacacac-agtCAGGTAACTAGTTGGGCATGTGCTACACAAGATCAAGTGACCTGTATCAGCCTTGACTTTGTACAGTTTTGAACTGAGCAGGCAGGAACTCCTGTCaatgtatattttcaaatattcttagAAAATGAGATACAAATTTAGCTACAAAcccatatatatatgtttttggaactgggaatca----------------------aactcaagattttgtgcttgccaggcag-----------gcacttaatcc----------------------ATTATATATTTAT--------------------------------------------------CACAGAAAAATCATA-----AAGGACATAAACaagaaatggtttttaaaaatcaacaatattACTGCCCAGAAA-----TCACTGTAATTTAATCCCTTCTAGACCCTCCTTTGTATGAAAATTTTCGTATAAATATCtttaagaaaatgtatatttatatatgcaaatttataCAGAGATCTATAAATCATAAATCTATATGCAAA--ACATAAATTATACCT-TATGAAACCTATATTTACATGTATAAACACATATACATTATACAAACATTCATGATCATAACTCAGGCCAGAATAGCTTCCAT--------------GATTTAGAGCCACCTGCTCCAAACATTTTGATCATTAAAACTTTGTGCTAGAAAACAAGTTTA--CCAGAGTTCATACCTTCACTGTGTACCTCACAAGAGATA----------CAAGTTACTTGTCTTAAATTAATTTACCTTTCAATTGCAAAAAATAATGTTATCTCCTCATAG----------------ATTCATA--------TGCTAGTATATG-CATGATAAGTCTTCAATGAACTT--TAAGAAGTGAATAaagcattttt------catttataaagcaAAGAA---TATTTGAAGATAGAGAAGTCACAATTGTTCTAATTAGATAGACTTTGATAGGTACGAAAGAGTCCCAGAATCTGGGCTTTCTTCCCATGGGGATAACTGTGACTTTTAGTAGCTTCTTTGACCAATCCTTACCTGTGAGGATTTCCatctcaaagaaatattttagaattaggGATGAATCAGTATtatactaaata-------tataaatacaatgatacata------------------------------------ctcctttttctctctcaagTCCCAGTTCTGTCCATTACAGCAAAATCAAAATCTCAATGTTCCATGTCTCTCATTCTCCACATTATcagacttttaaataaaaagataagtgaTGAA-------TACTTGGCTTATTTTCCCACTGGATTCAGGGAGAGGAATGCAGGGTGTG-----TTGGATATGGCATAATCAACCATTTTGCAAGAATTGTATATAATTTAGAGACAAATATTTAACAAACTAGAACAAACAGGAActcaacaaaaataatctttcttcCCTCGTTGTTTTATGATACATTTAATTGCatgaattct----gtttttgttccaaaggaaaatcaacaTCCACAGAAGAAAACGTGCCATACATGGGCTGAAAGCTACCTGATTTTTCAATACCAATCATAAAACTAATCATAAATACTAAAAATGCTGTTATCTGATGATTTGTGTGTGATTGTGAATTCATAAACAT-----CACTTTTGTTCTAGGTCtat-ataaaataaaccagaccTATTTGTATATTAAGGAGCTA-ACATAA--AGGTAATAAATGCAATAAGAAGTACATTGAAATAACCAAGAAATTTTAACCTGAAATGCAAAAACCTATTCCTTCTGCAAGTGGACCTCTCTAAATTAATCCTGGCTTGATATAAGTCCAGATGGCTTTACCACAGTCATTATTAGTCCTACAAGTGGCTGTTGGGACGACATTCTCTGATGCAAAGGTATGTGTGTATTATGGA----GCTCCCCATAGCCACAAACTTCTCCCTCCAAAACACTCTCTATTATTTCATCAGGGATCTTATCCATTGTCCATTGTCTACCACTCATAACAAACATATAATTGA---TTTATAAAACCCAAT---------TCAATTTTCCATGACACAGCAGGCAGGAACTGATTGCTCCAATTATTGTCTGTTATTTCATGATAAGATCATTAGCAATATCTACCACTGAAGTATTTGTTTGTCTTATGAATAGATGTTGTACAATTTAATCATACCATCTTACCCACAATCAATGAAAAACTAAGACACACCTTCACAT-TACA----ATAGCTTATCCTCAAATTAAGCAGCA----------CCAAAGCAGCAATCTGAGATACATGTTTTTTCCACCCATG----ACCTAAACTTGCTCACATAACTGG-TCTGGCTTTCTGCCTCCTCTCTAAGGCTTTGCTATCATATTATCCTGCTGACTTCTCTACTTTACA---CCTTACGTAAGTATCTCTCCTAAGTGGATGTAAGGGCTACAGATGACTCTGCTGTGAGTTGTAGTATCTATTTAAATCAGTCTATCTAGTTTTGTGGCATGCCACAGATGCTAAGCCCACACCTCTACATAGCAGAATTTGACCATGCACCAAAAGGAGGCGTCTTTCA----------------------------GTACCCATACACAGAGTGGTACCCCTGACCTCTCCCCAGATCTAGGAGTTAATAATAAAATGTATGCCAAGAGTTTTCAGTTTTGACCTTGAAACTCCTATCCCTCCTGTATCTCAGAGTGCTAATCATATCCTGAAAACATCATTATGTAGAGAAAATATGTCAATGTCCGTGT

a score=12621
s chr3            93161492 453 + 160039680 GATAGCACTGATGGTCAGACTGGTGGCTTCATCTAGCATTTGGGTGCAG-CCTTGACAGAGCTACTACTG----------------ATCCATGAAGAGAGCTGCAGAGAGAGGCATGT-------TCATGATACTGAGCAATTAATTCCCTGATTACAATTAGGAAAACAAAGAGTTTA------GCAGAACTATACTCTAAGCACAT-ATTGGTTAGGACAT-GCATATGGTAGGTGCTACCTGAGAGAAGAAGGTGAAGACATGCAAAGAAACAATTCTCTTAGCACGTAGAGGACAGTTCAGGCTCTCGGGC----ATGGGAGAGATGTATAAAGGAGACCACCAGGTTTCCAA-----AAGAGAACTCAGCCTACAGCATCCCCTAGGGAGAAAGCAACAAGAAGAGACAGG-CCTTCCCCAAATGTCCCTTGCTTAGAAGAAAGATCAGGTACCACAAAAGAAGGCCAACTCTCTTAGAGCTCAGCAGCA
s HiC_scaffold_1 139440932 471 - 233722169 GAAAGCATTGATGGTAAACTTAGTGTCTTCACCTGCTATTTGGGTACAGGCCTTGCCAGAACTACAATTGGCAATAAAGTTTTTGGAGCTTTGAAGGGTGTTGTGGGTGGAGGTTTGTCTGTCCCTCACAGTACCGAA----TGATTCTCTGATTACAATTCTGAAAACAAGGAGTTCGTTCAGTGAAGAAGTACATGGGAAGCACATCATGGGTCAGAACGTCACAGGTTATATGCATTACCTGATGGAAGAAGATGAAGATGCTTACAAGA--------CTCAGTACATAAAGAACAGTGCAA---CTCTGGATATGATGGAGGAGATGTATAAGAAAGCTCAT---gtgtaaaatgtataaaagaatccagtctatgaaa------agaaaaaagttaaacagaAGAGGTGGGACCATTCCAAAATGTACCTTGCCCTGAAAAAAGATCAGGTAGTTTAAAAGAAGGCAAGCTTCCTCAGCGCTCAGGAGCA

a score=17882
s chr3            93161493 1302 + 160039680 ATAGCACTGATGGTCAGACTGGTGGCTTCATCTAGCATT----TGGGTGCAG-CCTTGACAGAGCTACTACTGATCCATGAAGAGAGCTGCAGAGAGAG-GCATGTTCATGATACTGAGCAATTAATTCCCTGATTACAATTAGGAAAACAAAGAGTTTA--GCAGAACTATACTCTAAGCACATATTG-GTTAGGACA-TGCATATGGTAG-GTGCTACCTGAGAGAAGAAGGTGAAGACATGCA-AAGAAACAATTCTCTTAGCACGTAGAGGACAGTTCAGGCTCTCG-GGCATGGGAGAGATGTATAAAGGAGACCACCAGGTTTCCAAAAGAGAACTCAGCCTACA--GCATCCCCTAGGGAGAAAGCAACAAGAAGAGACAGGCCTTCCCCAAATGTCCCTTGCTTAGAAGAAAGATCAGGTACCACAAAAGAAGGCCAACTCTCTTAGAGCTCAGCAGCAC-CTGCTCAGGAAACAGATCActtccctccttccttccttccttccttccttccttccttccttccttccttccttccttcctcccttccttccttccttccttccagacatggtctcactaagaaactcaagctatcctcaaactcaaagcaacccccctgacccaaccttccaaatattggacttatggatgcactccaccaagcccagctCACAAATAATTGTCTATAAAGATTTTTCACATAAAAACAA-TTAAAGAACTGTCAAAAACTAAAAGACGTTAAAATATTAAATTTCATGTAGTCTATGATACAGTAAAACACATGacacacacacacacacacacacacacacacaTGTAATACACTTTTGTAATCCATACACACATG-AAACATTGAAAGACTATTATAAGCCAGG-ATTACAAGTGACTTGTAAAACCTGAATAGGGAAGTT---ATCGTTTTTACTTCATTATTTTTATTTTCCTATACTTTGCAATATTTCTTCTACAAACA-TATCACTCTATGGTGCAGGAaaacaaacaaacaaacaaacCAAAAGACCCGTACTTCTTTAAAACT----GCCAGTCCCTGGCAACCATCCGTTTCCTTTAATAGAGTAGGCTGGTTAGCT------------------------GATATGTATGAGGTCCAAAGCGGGACTGACTTCTTTTCAAGAACCTGCTCTCAGTTTTTACAAGGCAATTTCAGCCTCGCAGTCATCGTAAAAAGCCACTCACTGGTACACAGGCACTGCTGAAGAGTATTTACAAGCTCTCTGAATCTCATATATGAGTTTATGGCTGTTGTAATGAGGGATGCCTCTCTACAGGCCCATGAGCTATAATTTGAGCTTTT
s HiC_scaffold_1 138837537 1083 - 233722169 ACAGCA-TGATGGTCAATGTGGGGTCTTCACCTACTTTTGGGATGGATGCAGGCCTTGCCAGAACAACTACTAGC-----AATAAAGTTTTGGGGACcttgtttgtttctcatatt-atCAAGAAACTCCCTGGGTATGATTCTGAAAGCAAGGAATTTAAAGCAGAAATATAAT--AAGCACATCATGTGCCAGAACACTGCATAT--TAGTGTGATACCTAATGGAAGCAGATGAAGATGACTATAAGAAACCGTTTTCTTGATACCTAAAGGAAATGTGA----CTAGAGGTATGGAGGGGATGTA-GAAGAACACTCACACTGCTGTAAGAGAAAATCCAATCTATGTGGAaagcccaagagagaagttaACAAGAAGAGTGGAACTCTCTTAAAATGCCCCCAACCCAGAAGA----TCAGGAAGCACAAAAGCAGGCAAGCTTTATGGGAGCTCAGGCGCAGGCTGCTGAGGG------------------------------------------------------------------------------------------------------------TAA-----TCAAACAATGGACAAAGTCAAAAC---------------------------------------------------------------------------TTTGAAGATTTTTCAGATAAAGACAGCTTACAGAGCAGCTTAAAATGA-------CTAAAGTGGTAAATTTCATGTTGTATATATTTTACTACAATA-GTAATGTACATATGCATTTCTGTA-----------GTAATATGCACatataataaatacacaaaaataaacagtgaaaagCTAT---AAGCCAAATGTTAGCAGTGA-TTGTGAAGTTTAAACagtaaaatttaagatatttttactttcttctttacaTTTTCC----------AGTGTTTCTATTTTGAGCAAGATTACTttt------------------------ataaatcagaaaataagtATTTCTTAAAAACCATTAGCAAGTTCTT--CAGCAGGCTGTTTGCTCTGATCAAGGAAGCTAGTGAGCTAGGCTTTTGTTGATCATATTGGCAGACAAACATGTGCACCACAGTGGGATTTTCTCCTTTCCA-GAAGTTGCCTTGAGTCTTTACAAGATAGTTTCAGCTTTGCAGAGCTTATAAAGAGTGTCTCACCCACACATGGGCATTGTCAAAGAGCATTTACAAGGGCTGTGAATATTGTATGTGAatatatgtctgtttttatgAGGGATTCCTC-ATAATGGCCCTCAAGCTAT-ATTTGGGCTGTT

a score=48760
s chr3            93176286 2516 + 160039680 AATGAAAGAAATTTATGTGGATTTATTTGGAAGTTGGGAGCAAAGAA---GTCATTTTTCT--GGACATGGTGGTTTCTAGA--------ACT--TTTCTACaatgattatttcctataaatgttctagagccaccctgg-acttcattctctcagttcctctacactcatgtgaactctgattcctatattatacctcttaccccaatgatgctca-------tttcttgacttaatccaaact----TGATGTGCTAG-CTTAGTGTTGACATTG--------------------AAGAAAAAAATAAACAAAATCTATTTATACTGACTC-TACTCAACTCTATTTTCCTTGGCAGTTTTGTCTGAGAG----GCAGACACTACTGCTTTGGGTTCTTGGGTTCTGACAC-ATACAATGCTTCCTGCGTTCTTGAGAGTAGGCTTTTTT---GATATCATCATTCCCCCAGTGTTCC-ACATAATTAGGTACAGCCATTTCAGACTAAACCTCTGCATTCTTGGCACCACTCATCAATAAGACACCAGGCCATGGATATA------GCATTTGG-CACATCCTAGCTAGCCCTGGATCCTTGTTAGCACCTTCCTAAGTCATGATTCACCATG-----ACTTAACCA-TTGCTTATAAGA--CAAAATAGTTTCTTTCTATAGCACTTGGAATCTCCTGCCCCAGGTTGTGTAGGCTCCAAGG-CAATTATGTACACAGAGTAAATTTG-TGTGATGATAAAATGTGACAGAATTTAGAGAGCCAACTTTATCTAGTTTAATAGGTAAGTCCTATTCAGTATGGGCCATATAGTGGATACCTGGTATACCTGGGTTGT--ATAGAACCTGAGCTTCTGAATTCTCTTTAGCAACCAGTTCTTgtgaccaacagtataaactctatggccagactaccagaagttaagtcttggtttgacttggagtcagttaactctcttgcctgtaaaatagagataata----atagaagattaaagggataa--tgtaaagtgctATTTATATTTCT---ACTTCCAAATAAAACCTTTAATGTCTCTATATTAAAACCTAATTTTTATACTTGGTCATTCTCTTATTGACATTCTGCTTTCTCTCAGA-AAAGGGGAAATAGAGATATTTTATTCTAGACTCATCAGATACATTCCTCACCTTGACCTCCATGCAGTGTACACAAAACACTGCAAA----ACAGCTCTCACTTCTGCTTGAGCAAATTTACCCTTTGGGCTGACATACATCCCTAAACTTTCATACCCAAGCGGCACTTCATA--------------------------CAAACTTATA----------TCATctccccttgcagct---------------acaatgctttcttat------tatcctttgcctgcaccaaacagactttaccatagggcccttg-atgttttcttttt---------------------------ctgtttgagctttcagtaccatagtctctttgcccaaatgtctccctcccatttagagcttccctgatcctaacctctaataaaacagcct------cctcccagctcctaccttccttatcctgctttCAGTGATTATTATG-TCTGCAGGCTGTTTTAAAACATACATTTACTCATCCAT--TCTATTTATCCTCATTAGCATCCCTAATGAAAGTTCTGTTTACATATATTGAGGGGGGATGAAGCCAAACATCTAATGCATAATCATACAATGCAATCATGCACAGTTCTCTGGACTTTTCTGATTTTCTCTTTCTCTCAGTacacacacacacacacacacacacacacacacacacacacacacacGAGGGAGGGTTGCTGTAAAACAAACCCAGAGACTTGTACA-TACGAGGTAAATGTTCTAGTATGGAGTTATAACCTCAACTCTTGACTCTTCTTCCACTGTAAAACATCAAATATCACTTTTTAAG-GTAGTGAGGTCATATATT--CTTCCTAAGTGAGACAAAACAATATTTT-CTGTCATAT-------------------------------------------------------------------------------------------GAAAATAAAGCATGTCATTGCTTTGTAATGAAATGTGAAGTCATAAGAATAAGCAATACTGACAGGCAGATGGTAGAAGTTGGGATGATTAGTAATGTCATATAAGTCCACATTTAATGTTG-----TAGACCTAAACTGTATAA---AAATA-TGATAGTCCCTTA--AAACTCCTTCTAATAGTTTTTCTACATCCCTACTAATGATTCATCACATAGTGAGTTAATCTCACTAGTGGAAAA-TGACAAATGCTATCTTA-GGTTTCAGGAAGGTCTGTAGACTGTGAGGT-ACTCAGCATCTGAATCTGGAAAC--ATGTTTATAGAAT----AAAGATTATAAGTGAATCAGTCAATAGCTATC---TTAGTGTCTACATCAGTATTGC-AAAGCAAATTAGAAG---GCATTCAG---------TAACTACCCCAAAGTTTACTAAAACAGTCATGTGGTGGCTCTCAACATGGTACCTGATAGTTTAACAGACAGGAACCATACTATCTGAGAGCATGTAAAGACATACAACAGTGACAGAGACAATGACAAATG---ACAAtattaatgcctatttccactataaaacttgtcagaaatgtagtggttca------gaaacaatatagatttttctctttcagttatgaaggtaagatgtttgaaatgTGATTTAAGAGGTGA
s HiC_scaffold_1 138846140 2669 - 233722169 AATGAAGGAAAATTGTGTGAA---ATTTAGA---TGGGAGCAAAGAATAAACCATTATTATTGGGAGGTAAAGGAGGCCAGATGTAGTAGACTGCCTTCCACAGTGATTGTTTC-TGTGGATTCCTTAGAAATATTTCAGTACTTCACTCTCTCTGTCCACCCCCATTCATATAATGTTCAATTCCTACATTAAATCCCTTATTTCCATAATGCTCACAGTGCCTCTCTTTTCCTAGCCAGTACTATTTGGATACTCTAGGCCTGCTGTTGACATGACTTAATctactctctttaaaaaagaaaaaatcaacaaaatctaCTCATTTTGACTTGCATTAAACTCTGTTTTCTTTGGCAGTGTTGTTTGGAAAAACAGCTGATGCTATTGCTGTGGATTCTTACATCCTGTCACTCTAAAATACTTTCTGCATTCTTGAGAGTTGGCTTCTTCTTAGGTGCCATTATTCCCACAATGTCCCCACATAATTGGATATTGTCAtctcaaaataaacctctgctttCTTGGCAGCAGTCATTAATTGGAGACCAAAACATGGACGTACTGGTAGGATTTAGACACATCATGG--------GAAT--------GTACCTTCCCAGGTAGTGTTTCACCACATTCATATTCAGCCAGTTGTTTATAGACATCAAGAAAGTTCTTTACCGTACCACGTGGAATCTCATGCCTCACGCGGTAGAGGCTCCAAAGTCAGCTGAACACATAGATTAAGCCTGACACATTAGTAGGATATGACAGAATTGAAAGAGCAAACTTTATTTAACTTAGCACATAAATCCTACTTCATTCTGATCACACATTGTGGGACTAATTTACTTGGGTTCTTAACAGAACCTGGGTTTCTAAGTCCTCTTTGGCAGCCAATTACTGTAATAAAGAG-----ATTCTATAGCTGGACTGCCTGAGGTTAAGTCTTGGTTTGACCTGGGGAAAATTGCTTATCTCCTTTATAATtcacaaaaaataggaaattgaaGGTTAAAGGAATAACATTTAAAGTGCTCTATAAATTCTTGTCATTATCATCTTTA--CTTTATTGGCTCTGCAGTAAAAtctgatttctct------ttcttctgtcatt--caatctattttctctcaaataaaggacagaaaaggaTGATTTACTCTAAGCCTGTCAGGTATATTCTCCACCT------------AGTGTACAACAGATAccaaaaatattccatttttcatttgtttctgaacAA-----CCCTGTGGCATAgcttatatttc-aaatttttctaccTAATTATTGCTTTATGTTATATGACCTTGTCCCTCCTCATACcacatttataattttgttctCTATCTCTCCTCCCTGCTTGTTCACTCTACTCCACAAGGCACACTTGTCCCTTGTGGTCTTTAAATGTACCAAACAGCTCCTAACACAGGGCCTTTACACACTCTCTTCCTTCCTAgaaaacacatccactggaagcaCGGCTTAGGCCCTCACTTCTCTCTGGTCTTTACCCACAT--CACCTTCTGAATTAGGCCTTCCCTAACCCCACCTCCATATAAAGTAGACTGACTCCTCTCTAATTCCCAATCTGCCCTACTCTGCTTG--------GTTTTGCTCCACAGTACATTTACCACCATTCAGTCATGTACTAATAGTGTATTTCTC----TTACAATCCCTAATGGAATTTCCCCATATGTAACTAGGGAGAAACACATTCCATTCCATTAACTAATAAGAATATAATGGA------CACAGCTCTTCAGATATATTTGATtccccccttttttgttttcttttgtttttgaa--------------------------------gggGAGCCATGCtcaggatcaaacccagggccttacacagcACTTGGCCA-----CTAG------GTTATACCCCCAGCCTCTgagttccctttt-----------taaaataacactttttaaaagtaatgtgAAAAAATTTTACCTTTCCAAATAAGATAAAACAATACTTTGTTGTCATTTAAATATATTGTCTATACAGCCACTTTTTCGTATCTTTTTTACTAGTTAAAAGATGGAAGATacatagaaaaagtaaataacaaatactatggaaaacaataaacatcatttatttgtatgtttatgtAAGATTGTAGGAATAAGAAACATTGATATGCAGATACCCAGAGTTGCAACGTTGTACAAGTttacatacatataaattaaaTCTTGCCACATGGAACTGAGGTACACAATGAACATACTGTTGGCCCCTTAGCAATTCTCTCTTAATAGCTTTTTTTCATTCCTACTGATAACTCATGACATAGTGAGTTAATCTCCCTGatggaaaactgaaaaatagtgTATCAGGGTTTTAAAAAGGTC-ACAGATTATGAGGTCACTTTGTATCTGGGTGTGGAAACTTACATCTATAGAGTCCAGAATGACTATCAGTTAACC---CCATAGACATTAAGTTAGTGTCTACATCAACATTACTCAAATAAACCAGTAGCATTTATTCAGACTACATCTTTATTGCCCTACAACTGATGGTAGAAGATATAAGCTGATTTTGGACATGGGAC--------TTCATAGACAGGAACCGTGTT--------------------ATGCAACACTGATTCAGAC--TAACAAATTATCACAATATCAGTTACCAATTGTACCATAATA--------AACTATAG-GTTTCATGACATAAATCAACACAAAATTTTCTCTAATAATTCCGGAAGTCAGAAGTTTGAAATAAGTCTTACAAGGTAA

a score=11328
s chr3            93179865 1284 + 160039680 GAGGAAGTCAAGAGGAAGAGTTTGTGAAGTATTTAGAAAGAAAAATCTGCATAACTTATTGAGTGGCAGGATATAGAAAATAAAGAAGGAGAGG-------TTAAGGGTAACCGTGAGGATGTATAGTAACTGGATGAGTGGGTTCAATGCCAGTAGACAGAAGTAGAGGAAGCAAAGTGATT----------------------------------------------------------------------------------------------------------------------------------------------GTCTGAGAT--TGACTGA------------GTGCTGTCA--------------------------GTGTAGCACC---------TTGCTTGGG---------------TTTGAA-----------------TTACTACACTGAGAAAGATATATGTATATATCATAAACCCAAGAGCAAATGTGCAGC--------------------------AGGGGGATCAAGACATTAAGGTTCTTCTTCATAGTAGTACTCCTTCAGCCTCTGTTCT-TGCTTCACTGTCGTTTCTTATGAGATATGTTTTCCTGCTCCCCAGGCTCCATGGTTCTCCACGTAGCTGCTTGTG--CCTAGACTTAATCTCTCC-CCGTTGGAAACACCAAACTAAGACTAACAAGGCAACCACA-----CTAAGAAGTGAAT---TTGAAGGACATACATTGTC----------------------TTTGTTCTCA------------------TGGAAAAAAGCA-------TTCAGGAAA----------------ATGGGCCAAAGTATTCACTACTCTCAAA----ACTATTTATCATTAGAATAATTTTGTGAG-------TTATTACTATACTTGAGA-TGAAAAACTCTTTCTCAGAAGAA--ACCATGCCAACTTGATTACCATTACACTTTTTTTACttatttttttgtaatgaaaacataattacatcattttcgtcttccctttccccctctaacccttcccattgcacccactTCTCCAGCATCC-AGAACATGCTTAACAAGTACATTTTATACATGTACTGGGTGGTTAAATGGAATGAatttcaactttatgtttgagggaat-tggggtcgtggagaatcattcactttctcaaaagttacatggccaggaaatatcaag--gaattaaatccaaaccttgaccacatcagactttgtgttctctATTGGGAAAAACTTGCTTCTGATGAGGACTTCCCTGATACTCTGAAAACTTACACCTTCTCACAAAAACAAACTTGAATTTCTCTAGGCTAATAATAGAGAAGCAGTTAT-------------------------ACTCTACTGGAGCTAGGATTCTCCTCAGCA----------------CACT-CACATAAACAGCTGGAGGCTAGCTCTTTGTTC-TGGAACAAGGACTCATGACTAGTGTTGACAT----------GAAATGAGGAGCGCATTTCAGTTACAGCCATCCTACACACTGCTGTCACATGGTTCATCTTCTCACAAATAAAACTGCCAGCTGGAAAGGTTC-CAGTTGTGTCACTATCCACAAGCTCCAAACTCTAAATAAGAT
s HiC_scaffold_1 138869503 1560 - 233722169 GGAAAAGTCTAGAGAAAG--TTCCCAAGGTATTTAGGAAACAGAACTGATATCACTTGCTGAGTGATTAGATGTGGGAAATGagggagcagaaaaaaaaaatctaggctaACTCCCAGAACTTGGAGCAACTGGTTGAGTGAGTTTAATGCCAGTAAAACAAAGCAGAGGAAGCTAAGTGAGTTGACTAGAATAGAGAATTTCTGTTTTAGACATGTTAGATTTGGTTTTGCTATTTCCATGAGAAATCCAGTTGAAGCTTTCCAGGGTATAGTCCAGAATTCAGCAGCAACTCAGAATTGGAGATAGTCATATTCGTCACAAAAGTCTGAGAGCATGACAGAAATAAGAAAGTCATGTTTTCAAGCAATAATTATAATAGCGATTATTTGTTCAGTGCCCCTCATGTGTTGGCTGGGAATAATAGAGGCCACTTTGAGGTGATTTGTAAGCAGACTTACTATATAGATGCAGGCACAGAGGTGTCCTA-GAACCTAAGGGCAAAAACACAGCTGGATCTCAGAAAGGGACTGTAGCCTGGGAGGATCCTGTCATCAGAGCTCTTTGTCAGTGTAGTTTTCTTCATGCCTGTGACCTCTGCTTACCTATTCTCTCTTGCAATAGAT-TTTTCAGGCTTCCCAAACTATATGGCTGTTCACATAACTGTTTATATTTCTAAGGTTAATGTCTCCACCACTTAGGGCATCAGCCAAAGATTAACAACGGAACCACAGAATGCTAATACTTAATTGCATGAGAAGATATTTACTGTCCTATCTTAAGGCAGACAGATAATTTGGACCAAATAATTGTGGAGAGAGGTTGGAAGAGAATAGGCTGTCTCCAGAAAAGATACCAGTAGATTAGATGACCCAAGGTATCCACTACTCAAAtatgttcttatttttgtttagaaTAGCTCTGTGAGGTACTTCTTATTACTATACCTTAGACTGAAATGC----CCTAAGGACAAAGACCCTATCAAC-------CCATT---------------------------------CATGGTTGTA-------------------------------------------------TTTCTAGCACCCTAGCTCATGCTAACTGTGTACATTTTGT-----------GTGAGTGAAC-AAATGAACCTGAATTCTACTTTTGATAGAATATGGCCTCAACAAGGGCTaatcagtct-tccagagtgccaCAGCCAAGTAACAGAAAGGAGAATCAAGTACAAATCTACTCTATTTCAGATGTTGTGTTC-----TGAGGACAACCCACTTCTGGCAAGGCCCTCACTGCTATCCTAAAGTCTAGAATGtccttgaaaaaa--------aatttcccaCAGCAGAAGATATAAGAGAACCTATTTATATCCCACAAGCAAGTAGAAGAGCTTTGTCAGGGCT-GCACTGTGCTAAGAACCAGTGTGAAGGCTGGCACTCCATACAAGCAGCTGAATGCCAGCACTGTGCACTTGGGTAAAGGGCTCATCACTGGAATTAATACCATAACACTAGACACATGGAGAACATCT-GTATACA-CTAAATTAGATATTTCTATCACATGACTTGACCACCCACAGCTAAAGCT-TCAGCTAGAAACATTCTCAGATGTGTCTCTACCCACATGCCCAAAGAATTGAATAAGAT

a score=29743
s chr3            93190754 2051 + 160039680 ATGTCTGAGAGATAATTTTATAAATTAACTCTC---CTGTTATGTTTACCAAATAAGCAATAGGTGTGTATGCATTTAAGGCTTTTTCTT---GTCTTTCACAACAGTCA-AATGCACATCTGTTCTTACTTACAACTTCTTAGGTATAATAACCG-AAGCATATAGGACTCTTTTTTCAA-TTGGCCATCACTGAAATGGGATGGATATGGATAGAGATAAAATCGCCAACATTCATGTTTGTTAGTGTAAGAGC------------------AACAGAC-CCTATCCTACTCTCTCTTCACTATCA-TCTCAAAATACAGAGCC----------------------CCTGCCCAACAAATAGTTAACCCCATGTTCTAGAATGCTGAGT-GTGGAAGTAATAGGTAAGGGAGCCAGATCTACAGGAGGCAGATCCTGCACCTGATTGGAATGTACCTGACTCAACTTGCCT--------CTGACTT------CTGAGACCCAAAAGGATTGGGCTTTGCCTAAAATGAACTCCAG---CTGACAACCTTGAGTAGCTTGCTGGAGAAATTA-CAGTGAAATTTGATAAGTCAATTTATATTTAGATAGAGCAACATTTAAAAGTTGCAAAATACACTCATACATGGCCCATATTCATGAAATGTCCCCATTCCAGTTAGACTAATCTGATTTGCTCTACACTATCCATCCATCTGAACCCTATGGGGTGGAAAAGTGGG-AGGAAAAAAGTAGAGATGTTCAGAAATCTGCGGTCCATTAAAGAACACTTGTTATCTGGCTATGTTTTTAAAGAGAAAATGTATAAT---TCTCTATGTAAAAAGCTACAGAAAAGTCCCTGACTTCAATGTTTGAT--GGGTAAGGCTTCATGGAGAAGATGAAATGGCAAAGAAC-----ACAACCAGCCATGAAGGAGCTTCCAGGATGCAGAGTTCAAACAAACATAAGATTAAAGAAGCAGGATAAGTTGCCCCACATATACCTGCCCCAGTGAATCAGTATAGACTAAGTTGAAGATAAGGTATAGTCCTTGTATCCCAAATTCAGGAATGTGCCCCAAACTGGTACCCACAGAGTAAGTTCTTCTGATCTGAGGATTTCATCTCCTTTTTAGAGGCAAATTCTCATTATTATCATAACCATTGCAAGAGGCATCAAAATTACTGGCATAATAGTCATCCTTAAT-GAAGGGCTTATTAGCCAACTAAGCCAAAACTACAAACCACTTTGGAGCAGACCAATCACAAGACAGGTTTTTATAATAATG---TCCTAAAATGATGATTAATTCCAAGTTCAGTATCTGACATATAGCTTTTAGCTTTCAAAATAAAACTGTTAATGGC-----ACTTTGTTATATTATCACTAAAGTAGAGAAAATATAATTATTTTCACAAAACATATAAAACAAGACAGCATTTTAAAA-TTTTGAGTTAAAA----CTATGATTT------CTGTTACTTAACTACATTTTGTTTTAGACACTT-----AAACTTTT----------CAGCACAATAAAGTAAATGTTAGACATCCACAAA--TAcaagtttacatagctaatgaaagagcaagacaggcttcctcat----gctgtcagatttcaaaatatatgagctttatcactgggctTAATCACTT-GCAATGGAATTTAATTTGGTTCTTTAGACAGACCCCAAGAATCACAAA--TTTAAGAATTCTAT-----ATCTGCAGTCAAGTCTTCTGGTTGGAGCAAATTCAGGAAGCAGGTATCAGGGTGGCCCTGGTGGGCA-CCTAAGCTCAAAACTATTCCCATTGAAGCAAAGGCC--CACCCTCTTTCTCTATGTGGAGTCCCCCCTTTTAAGCAATAGCCACCC---------AAGAG----------------------------------------------------------------------------CTTTAACATCTTACAT-GTTAAGTAGTAGCCTCCCT--------AAGCC-----------------AAGGATGCTGA-TCAATTATCACTAGATCAAAA-----CTGGTGATGAAAGGTGGGG-----CAGTTGGATTGGGGAGCTAGGGAATCCCT--------------GAGACATTAGT-----CACCCAATCATAGT--------------------------------AAAATAATTACTCTATCTGAGTCTTGCAATTATCTTTCTAAACTAGTGATCTAGTG-TCCCTTTTCTAAGCCTCAAATCATTAATGAAGAAAATTCTCACTAAGGAAAAAATGAGACAC--TAGATGAGTTTT
s HiC_scaffold_1 138876344 2193 - 233722169 ATATTTGACAAATAAATTTAGTGATTTGCTTTCATGCTATTGTGTCTATAGGATATGTAAGGGGTGTGTAT----TTGATGCTTTTTCTCCCAGTCCTTTCCCAGAGGCACAATACATATCAGCTATTA-TGAATATGTCAGAGGTATAGGAATTGGAAGTCCATGAATCTCTATTTTCAAATTGTCTAGTGATGAAGTAACTTTGGTGCAGATGAGGGTCCAA--ATAAACATTTAGGTTTCTTAGTGTATTAGCCAaccaaatttaaattaaaactgaCATCTAAAGGGTCCTCTCCTCACTGCCACTCTCAAAATAGAAACCCACCCTGTCTTATCACTTACAGCCCTGTGGGACAAACAGCTTAGCCCAGGCTCCAGATTACTGAGTTGTCGAAGCAATAAGTA-GGGAACCAGTTCTGCAGCTGGCAGGTTCTGAATCTGGTTGGTGTGTACTTGCCTCTGGATTCATACAAAGATCTAATTTAGTTAGCTAATTCCTACAAAGATCTAA--TTGCTTCAGCTGAACTCCAGTCACAGGCAAA-TGGAGAAGCTTGCAGGAGAAATAAGCAGCTAAATTTAGTAAGTCAATTTACATTTAGGTAGAAAACAGCTTAAAGGCCATAGAATATACATGTACA-----CAGGGTCAGCAAATGCCTTC-TACCATTTAGGTCAATATGAGCCACTAAACATTACTTGTCTGTCAGTCTCCTGTGGGATAGCAGAGAAGGCAAGTAAGAATAAGAGAGGTCCAAAAATCTATAATCCATTTGAGATTACTGAGGATCTGGGTCC-TCATGAAACAGAAGGGGCAGAAAAAATTCCTACCAATAACCCATCCCAAAAATCCATAGCTGCAAGATCTGGTAAGTGTAAGCATTCCTATTGAGAATGAGGTGACCAAGAGCCATAGACAACCA---AAGAGGGGGCTTCCAGAGTTTAGAGT----ACAACCATAGGATTATAATCCTCAGATAAG-------------AACTGTC-------AACATTAT----CATGACCATGATAAG--------------TACCATAT---GGAAAGAACTGTAAAC----------------------------------------------------------ATTATCATGATCCTCATAAATAC------------------------CATCCTAATCATCTTTAATCAAAGGGCCCAGCAGCCAAATGAGCCACAACCATGATGCATGGCCAAGCAGACCTATCACAGGCCACTTTTGTACATTAATAGATTCCAGTGATGCTGATTAATCCCAAGTACAATGCCTACCATAT-GATTTTAGCCCTCAAAACAAAACTGGTAACAATTTTCAAATTGATAACATCATccacaaatcaaataaaatatagc-aTTTCAATCAACTATGTAAAGGAAActagaaacttaaaaatttttagtaaaaaaacCCAGCAATTTAAACATTTGTTGACAGACTG--TTTTGTTGTAGgcactttatttaaattttaggcTTTATTACAACCCTATGAAA-AAATCTCCCACATTCACAGAGATGCTAAGTTACATAATTATTGTGTGGCCAAGATAGGATCCCACACCAGGACTGTCAGATTCCAAAATCCATG---CTAACCACTGAACCAAATTGTTTTGCTATAGATTTTGTCTTAGGT-TTGAGGGAGGAGCCAAGAATCCTAATCTTTTAAGAGTCCTACCCTGGGTCTGTCCTGAATTATTCTGTGTAGACCAGCCTTACAAAACAAGTCAGAAAATGGCTCTGATGAGAAGTATAAGTTAATAGCTTCTCAAGTTGAAAAAAAAGCCTCCAGCCCTATGCTCCATTTTG---CTTGCCTACCAAGCCATTTCCATCCTGAAAATGAAGGAGATGTCATGTTTACtacacataatttttatattcactATGGTACACATTGAGTATAATGCATCTTTAATTCTTTatccttaaacattttaaaaagttaagtattAGTCTCCTTTGGGCCTAAAGTCTCAGGCAACAGATCCTTAAGGCTACTGCCTTAAGTAG----AGTTCAGCAAGCATCTGGAGGTTTCAGATGGAGTATCTCAGTTAAATCAGGACACAACAACAGTCTTTTACTGGTAAAAATGAAGTATTGGTGAAGCAACTGAATTATAGTTAGTCTGAGGCCACTCTCtatgataaatacataaaataattactCTACCTGTGTCTTGCAATTATCTTGCTAGGCTAGTGATCTAATGATCCTTTTTTTGAGAAACGAGTC-TTAGGGAAGAAAGT--ATACCTAAGAAAAAGTAAGATACTGTAGATGTATTTT

a score=47096
s chr3            93193013 4533 + 160039680 [encoded data, 4972 characters]
s HiC_scaffold_1 138879643 4073 - 233722169 [encoded data, 4972 characters]

a score=5696
s chr3            93197160 188 + 160039680 GGAAGATAAACATGCAAG---GGGTGGGGTTAAGTTTGATTAGAAATGAATCAGCCCATCCCACAGAAGACAG---CACTCAAGCTAGAA--GCTATATAAGGATCACTGTCCCGATCCATCAACACCCTGCAAGCTGCGTCAGGCCTTATCCTACTTGTTCCTTTGGTGAACCAGGTGAGAGGAATTGAAATCAA
s HiC_scaffold_1 138942049 194 - 233722169 GAGAAATAAAGGTGGAGGTATGGGTGGATCTGGGTTTGGTTAGGAATGAATCAGACCATCCCACAGAAGGTGGCTCCTCCCTGGATGGAGTTGCTATAAAAAGGCCTTTAACCCAGACT-TCAGTACCCAGCAAGCTCCTTCA-GCTGCATTTTAGTTGCTCTTCTCGTGAACAAGGTAAGAAAGAGTACATTTAA

a score=15108
s chr3            93200135 373 + 160039680 GCCTCTCTCTGTAGTTCTCTATATATCTCTGTTCCTTCTCCATCTAGGTTCATTTAAGCTTGAAAAAAACAAAAATGGCATATCTCTTAAGAAGTGTTGTCACCATCATTGATGTATTCTACAAATATACCAAGCAAGATGAAGAATGCGGCACACTGAGCAAGGATGAGCTAAAGGAACTGCTGGAGAAGGAGTTCCGGCCAATTCTGAAGGT-------ATGTGTTAAGTCTGAAGGCTATCAGGATTTT----AAGATTAGTT------CTCAGATTAGTTGGAACATGCACTGCCCCACCTGACTCTGAGAAAACCCCAGTAATAGTCTTTTGGGCTAGGTCATCAT-AAATCTATTAAGTCAGCATATATTTTTTAAAAGCAAATG
s HiC_scaffold_1 138884613 378 - 233722169 gtctctctttgtctctctctctctctctctgtc---tctcttactAGAGTCACTTAAACTTGCAAAAAG-----ATGACAGATCTCTTAAGAAGTCTTGTCACCATCATTGATATTTTCTACAAATACACTGAGCAAGATGGAGAATGTGGCACATTGAGCAAGGATGAGCTAAAGGAACTTCTAGAGAAAGAATTTCATCCAATTCTAAAGGTAAGGACCATGTGCTAGGACTGAAAGCTGATGGGATCCTATACATGCTCTGTTACAGGACCAAGATTAGTTAAACAGTACTCAAACACAGTGGTCTTTGAGAAAATTCTATGAGCAGTATTTTGG----ggacataataaaatttattgcaGCAACATGTA-TTATTAGGAGCATGTG

a score=7804
s chr3            93200154 211 + 160039680 TATATATCTCTGTTCCTTCTCCATCTAGGTTCATTTAAGCTTGAAAAAAACAAAAATGGCATATCTCTTAAGAAGTGTTGTCACCATCATTGATGTATTCTACAAATATACCAAGCAAGATGAAGAATGCGGCACACTGAGCAAGGATGAGCTAAAGGAACTGCTGGAGAAGGAGTTCCGGCCAATTCTGAAGGTA-------TGTGTTAAGTCTGAA
s HiC_scaffold_1 138965629 211 - 233722169 tatatttctcccttcc--cctcttttAGGTTAACTTAAATTTGCAAAAAG-----ATGCCTAAACTCCTGCAAGGCATTGTCACTGTCATTGATGTTTTCTACCAATATGCTACCCAGCATGGGGAGTGTGACAAGTTGAACAAGGAAGAGCTAAAAGAACTTTTGGAAAATGAATTTCACGAAGTTCTAAAGGTAATAACTTCATGTTATGACTGAA

a score=12744
s chr3            93200168 1034 + 160039680 CCTTCTCCATCTAGGTTCATTTAAGCTTGAAAAAAACAAAAATGGCATATCTCTTAAGAAGTGTTGTCACCATCATTGATGTATTCTACAAATATACCAAGCAAGATGAAGAATGCGGCACACTGAGCAAGGATGAGCTAAAGGAACTGCTGGAGAAGGAGTTCCGGCCAATTCTGAAGGTATGTGTTAAGTCTGAAGGCTATCAGGATTTTAAGATTAGTTCTCAGATTAGTTGGAACATGCACTGCCCCACCTGACTCTGAGAAA-----------------------------------ACCCCAGTAATAGTCTTTTGGGCTAGGTCATCATAAATCTATTAAGTCA-----------GCATATA--------------TTTTTTAAAAGCAAA----------------------TGTTTCTTCCACACTTTCCTGTGCTCTTCCACTTAT------------------------------ACACCAACTTTCTCATGCACTCAA-----GCTTCCCATCTAACATAAATAGATAAATTTGTGCTAACAAattgatcgattgatca--attaattgatcaatcaattgaAAGTTTCTAATAACCTTTCACAAATGCTAGCTCGTATTAACCTAAAGTAATACTCAAATA----------TTTATGTAACCCACAGTACA---CAAATATACTAGGTGTTGCTAGGTTATTTTAGCTGAGAATGTGACTGA-ACATGTCTT-----TATTGGTGTGTCTTCCATATACAGAATCCAGATGATCCAGACACAGTAGATGTCATCATGCATATGTTGGATCGAGATCATGACCGAAGACTAGACTTTACTGAGTTTATTCTGATGATATTCAAACTGGCTCTGGCCTGCAACAAGGTTCTTGGGAAAGAATACTGTAAAGCTTCAGGGTCAAAGAAGCAT---AGGCGTGGCCATCAACACCAAGAGGAAGAAAGTGAAACAGAAGAGGAAG-AGGAGACACCAAGACAGAAATCAGGTTTCAGATTTTCAAGTTGGAGTGAGGGAGAGGAGCATGGACATAGTTCTGGGGGCTCACGGGGACCTGCAAAACATAGACGTGGGTCCAACTCTAAGAGGTTGGAAAGGCAAGATGAATTATCCAGCTCAGAGGAATCAAGGAAAAAACACCATGG
s HiC_scaffold_1 138946609 1125 - 233722169 ctttctctttctaaGTTTACATAAACT-GCACCTCCTAAAAATGTCTACACTCCTGGAAAACATCATTACTATCATTGACCTTTTCCAACaatattcaaaacaagatgaggaGACTGACACACTGAGCAAAAAAGAGCTGAAGGAACTTCTGGAAAAGGAGTTTCGGCCAATCCTGAAGGTAAGCACTAAAT--GAGGggtgaaaaaat----aaagtaattct---gTTCATTACCAATAACCTAACCAAAGCTAATTCTGAAAAGTTTTCCAACAGTTTCATCTGAAACAAAACAGCCatatttcagaaattattttt------atttcattgtagcTTTATTATGATACCTATACCTATgcctataaaaatacagaaaacttacgtgaaagaaaaatacttagaaatataaGACGGACAATTATTTAGCTCTCTATAATAGTTTTCCCCTTATCAAGAATGTTACATGGTATACTTACAAAATGTATAAAGTTTGCCTTATACAAAATAAAGACTTCTGATAAAAGGtaaaatcataattatttaatgaaacaTT------TTCATCATTCTCTACTGATCCATAAAGTGTATTTTTCTAG--AGCACTTGCAGTTACAGGTAAGTCTGATTtcaaggagaaacaaaaacaggCAAACTGGTTGATTTTACTATCAATACATCACAAATCTA--AGTTAATTCAAAGTTACTT-AGCTGACATTATGAGTCATACACACTCTAGAATTGTCAATTTGCTTTC-----ACAGAATCCAGATGATCCAGACACTACAGAAGTTTTTATGCATATACTAGACATAGACCACAATGAAAAAATAGACTTCACAGAGTTCTTGCTGATGGTATTCAAGCTGGCTCAAGCATATTACCAGTCTGCTGGGA---------GTAAACATTCACATGtacaaaagcacaaaaagaatGTTCATGATGAGGAAGATGAAGATGATGAGATAGATGACACAgtacaaga----aaaaaggaaaataccttATAATGCTTCAAGACAAAGTGGtaggaaacaaaacagacaaagatCCAACAGTCCGAAAGGCAATGGAAAATACAAGCATAGGTCAAGCTCTGGAAAAcgaacaaataaaaggaaatcaaccagtccaca------aaagacaaaacaatgtgG

a score=65620
s chr3            93200646 1546 + 160039680 TTTCTAATAACCTTTCACAAATGCTAGCTCGTATTAACCTAAAGTAATACTCAA--------ATATTTATGTAAC--CCACAGTACACAAATATACTAGGTGTTGCTAGGTTATTTTAGCTGAGAATGTG------ACTGAACATGTCTTTATTGGTGTGTCTTCCATATACAGAATCCAGATGATCCAGACACAGTAGATGTCATCATGCATATGTTGGATCGAGATCATGACCGAAGACTAGACTTTACTGAGTTTATTCTGATGATATTCAAACTGGCTCTGGCCTGCAACAAGGTTCTTGGGAAAGAATACTGTAAAGCTTCAGGGTCAAAGAAGCATAGGCGTGGCCATCAACACCAAGAGGAAGAAAGTGAAACAGAAGAGGAAGAGGAGACACCAAGACAGAAATCAGGTTTCAGATTTTCAAGTTGGAGTGAGGGAGAGGAGCATGGACATAGTTCTGGGGGCTCACGGGGACCTGCAAAACATAGACGTGGGTCCAACTCTAAGAGGTTGGAAAGGCAAGATGAATTATCCAGCTCAGAGGAATCAAGGAAAAAACACCATGGGTCTATCTTTGGTCACTCTTGGAGTAGTAACAAAGAGAAAGATGGTTCCAGATCTGAAGAGCTAGGAGAAAAAGGAGACAAGTCATATGATAGCCCCTCTAGAGAATCTGAGGAAGAGTATGAGTCTGGATATAGGTTAAACCACCAGGGAAGGGAAGGTCATAGTGGATTGTCATGTGGATTGGAGAAGAACAAATATGAGTTAAATTACATTCAATTAAGAAAGGGTGGAGAACAAAAGCTTGGGTATAATACTTCAAGTTCAGGAAACAGTAAGATACAAAGCCATGTATATGGTTTTAGCAATTCTAGTGGATGTTGCAGACCAAAAAATGCTTCAAGTTCTTGTCAGGCAAGTAGATCACAGGGACAAGGAAATCAGTCTTGCCGTACCCAGTCAAACTGTCAATCAGGAACTAGTGGAGGACAAGGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCA
s HiC_scaffold_1 138885799 1464 - 233722169 TTTCTACTACCCCTTAATACATTCTAGGTACTATTAACCCAAAGTAATCCTCAATTTAAACTACAACTACATAATgtcaaaaagacacaaat-taatATCC-TTACTTGGATGTTTTAACTGAAAATTTGGGCAAGACTAACTAGGTCTCCCTTTGTATGTCATTCATAAACAGAACCCAGATGATCCAGAAACAGTGGATGTCATTATGCAAATGCTGGATCGAGATCATGACCAAAGACTAGACTTAATTGAATTTCTTCCAATGGTATTCAAGCTAGTTATGGCCTGCAACAATGTTCTCAGCAAAGAATACTGCAAAGCTTCAGAGTCAAAAAAGCGTAAGCATGGTCATCAGca---agaagaagaaagtgaaacagaagaggaagaagagacacCAAGACAGAAATCAGGTTATAGACGTTCCAGTTGGCAAGAGGGAGAGGAACATGGTTATAGTTCTGGGGGCTCCAGGGGAACTGCAAAACATAGACATGGGTCAAACTGCAGGAGACTGGAAAGACAAGGTGAAATGTCCATCTCAGAGGGATCTGAGACAAGTCACCATGAGTCTAGCTATGGTCATTCCTGGAGTAGTGGCGAAGAGAGACGTGGTTCAAGCTCTGGAAGGCTGGAAGAAAGAAG---CAAGTCACATGGTAGACTCTATAGGGAATCTGGTGAGGAACAGGAAGCTAGAGCTGAGTCAAAGAGCCCAGAAAAGAAACATCatggttctctgtcacatggaCTAGGGATGAAAGGACATGAACCATACTCTACTCGGACAAGAAAGAGTGAAGGACAAACACTTGTATCTATCTCAACAGATTTGGGAGGCAGCAAAGAACAAGGTCATGCATGTGGATATAACAATTCCAGTGGATGTAGAAGACCACAAAATGCTTCTAGTTCTTGTCACACAAGTAGATCTTGCAGTCAAGAAAATCAATCTAGCTATAAACTGTCAGGTTGTCAATCAGGAAGTAGTGGAGGTTATAGTCATGGATGTATCTCAGGAAGTCATTCCTCTGGATGTCCTCAGTCTGAGCCTAGCTCCTGTAGGCATTCTTGTAGGCAGAGAGGATATGGAAATAGACAATGTAGTCAGCCACAGAACTGTGGAGGACAACAGGAAATAAACTCAAGCCAGTCCCCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTCTT---GCTGTGCACAAC------------------------------------------ATGGGCTTGGATCAAATCAATCCACTGGCTATGGTCAGTGTGGGTC----------CACT---------------------------ACTT--GTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTCAATCTTGTTGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTATTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAGAACACT-GCTTTGGG----ACAG-TGTGATTCAGGTCACTCTTCTGATTGTGAACA

a score=50948
s chr3            93200764 2803 + 160039680 TGACTGAACATGTCTTTATTGGTGTGTCTTCCATATACAGAATCCAGATGATCCAGACACAGTAGATGTCATCATGCATATGTTGGATCGAGATCATGACCGAAGACTAGACTTTACTGAGTTTATTCTGATGATATTCAAACTGGCTCTGGCCTGCAACAAGGTTCTTGGGAAAGAATACTGTAAAGCTTCAGGGTCAAAGAAGCATAGGCGTGGCCATCAACACCAAGAGGAAGAAAGTGAAACAGAAGAGGAAGAGGAGACACCAAGACAGAAATCAGGTTTCAGATTTTCAAGTTGGAGTGAGGGAGAGGAGCATGGACATAGTTCTGGGGGCTCACGGGGACCTGCAAAACATAGACGTGGGTCCAACTCTAAGAGGTTGGAAAGGCAAGATGAATTATCCAGCTC-------AGAGGAATC---AAGGAAAAAACACCATGGGTCTATCTTTGGTCACTCTTGGAGTAGTAACAAAGAGAAAGATGGTTCCAGATCTGAAGAGCTAGGAGAAAAAGGAGACAAGTCATATGATAGCCCCTCTAGAGAATCTGAGGAAGAGTATGAGTCTGGATATAGGTTAAACCACCAGGGAAGGGAAGGTCATAGTGGATTGTCATGTGGATTGGAGAAGAACAAATATGAGTTAAATTACATTCAATTAAGAAAGGGTGGAGAACAAAAGCTTGGGTATAATACTTCAAGTTCAGGAAACAGT----AAGATACAAAGC-CATGTATATGGTTTTAGCAATTCTAGTGGATGTTGCAGACCAAAAAATGCTTCAAGTTCTTGTCAGGCAAGTAGATCACAGGGACAAGGAAATCAGTCTTGCCGTACCCAGTCAAACTGTCAATCAGGAACTAGTGGAGGACAAGGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCT------------------------AAACA------------ATGTGGTCAACCACAGAACTGTGGAAGACAA---CAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGA----ATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGC---TGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGG------------------------------------CCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATG--------AGA-CTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGG-----------CTCTCAGCAG----------------CATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGA---GTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATC---------------------------------TGGTTCTGGGCATCATGGTTCTGGCTC------------------TCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATC---------------------------------CAGTTC------------------------TCATCCACTGC---------------------CTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCT--------CATGG----------------------CAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGA------CATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATCAACAGAGAGAGTCTTTTCA----TGGCCAACATAGACATCC--------GCTATCCCAA-CATGAACAACACTCACAGTTTGGATATGGTAGATCTCCAAGATCACCAGTACACCCTGAGTCCAGTGAGGGTGAGGAACACTCAGTAGTCCC---ACGGAGATATTCTGGATATGGTCACGGT
s HiC_scaffold_1 138967345 2924 - 233722169 TGATAGAAC-TGCCTTT----GTATCTTATTCCTACACAGAACCCAGATGATCCAGATACTGTAGATATCATCCTGCAAAATCTGGATAGAGACCACAATGAACAAGTGGATTTTACTGAGTATCTTCTGATGGTATTCAAGTTGTCTCGGGCTTGTAATAAAATTGTTGGCAAAGACTACTGCCAAGCTTCAGGGTCAACACACAAAGATCATAGTCATAAGCACCAAGAGGAACAGAGTGacacagaagaggaaggaaa------aggccAAAAATCCTCTTCCATTTACTCAAGTTCAAGCGCAGGAGAG---TATGGTTCCTTTTCCAGGGATTCCAGAGGAAGCATTAAACCTAAGTCTAGGTCCACCTCCAGAAAATTGAA---GCATGAAGACTTGTCTAGTTCTGAGCACAGAGGGAGCTCTAAGGAAAGGACA----GAGTCAAATTCAGGCTACTTCAAGGATAATGAAAAAACCAAGTATGGCTC-AAatc---aacaatataagaaaaatg---caGGCCA------ATCCCCT------AATC-----AATGGCATCA---TGGATTCAACTCAAGCAGCTATGAAAAACAAGATTACTG------GTCA------------------------AATTCAAATGACCTT--ATTA-------GTCAACAACAAAAATACGGTTCTGAACC-----------AAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataaca------aaaataaattaaattcctATCAGCCCTCTA---CTCAGAGAAAACACA---------GCAGTAGC---TCTAGTCATCATCTAGAAA---GCTGTGAACTGGAGTATGGGTGTGGCTCAGGA---CAATCTTCCAGATATGGTCAGCAAAAGACTAGATC---TGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGT---------CAGAAATACCATGAATCCAC-------CTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGG---TCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGG------TCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAG----------------------CCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA---------TGGATATG------CCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGT------CCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGT

a score=12372
s chr3            93201246 1098 + 160039680 GTTCCAGATCTGAAGAGCTAGGAGAAAAAGGAGACAAGTCATATGATAGCCCCTCTAGAGAATCTGAGGAAGAGTATGAGTCTGGATATAGGTTAAACCACCAGGGAAGGGAAGGTCATAGTGGATTGTC------ATGTGGATTGGAGAAGAACAAATATGAGTTAAATTACATTCAATTAAGAAAGGGTGGAGAACAAAAGCTTGGGTATAATACTTCAAGTTCAGGAAA-CAGTAAGATACAAAGCCATGTATATGGT------TTTAGCAATTCTAGTGGAT-------------------GTTGCAGACC----AAAAAATGCTTCAAGTTCTTGTCAGGCAAGTAGATCACAGGGACAAGGAAATCAGTCTTGCCGTACCCAGTCAAACTGTCAATCAGGAACTAGTGGAGGACAAGGATATGGGTGTGTCTCAG------------------------AAGGTCAG------------------TCCTCTAGATGTTGTCAACCTAAA------CCTAGATCCTGT------AGCCAGTCTTCTAGTCAGAGAGGGTA---TGGATCTAAACAAT---GTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTG
s HiC_scaffold_1 138886218 1041 - 233722169 GTTCCAGTTGGCAAGAGGGAGAGGAACATGGTTATAGTTC------TGGGGGCTCCAGGGGAACTGCAAAACA---------TAGACATGGGTCAAACTGCAGGAGACTGGAAAGACAAGGTGAAATGTCCATCTCAGAGGGATCTGAGACAAGTCACCATGAGTCTAGCTATGGTCATTCCTGGAGTAGTGGCGAAGAGAGACGTGG---------TTCAAGCTCTGGAAGGCTGGAAGA-AAGAAGCAAGTCACATGGTAGACTCTATAGGGAATCTGGTGAGGAACAGGAAGCTAGAGCTGAGTCAAAGAGCCCAGAAAAGAAACATCatggt--tctctgtcacatggaCTAGGGATGAAAGGACATGAACCATACTCTACTCGGACAA------------GAAAGAGTGAAGGACAAACACTTGTATCTATCTCAACAGATTTGGGAGGCAGCAAAGAACAAGGTCATGCATGTGGATATAACAATTCCAGTGGATGTAGAAGACCACAAAATGCTTCTAGTTCTTGTCACACAAGTAGATCTTGCAGTCAAGAAAATCAATCTAGCTATAAACTGTCAGGTTGTCAATCAGGAAGTAGTGGA---------------GGTTATAGTCA------------TGGA-----TGTATCTC-AGGAAGTCATTCCTCTGGATGTCCTCAGTCTGAGCCTAGCTCCTGTAGGCATTCTTGTAG------GCAGAGAGGATATGG---AAATAGAC------AATGTAGTCAGC-----------------CACAGA-ACTGTGGAGGACAACAGGAAATAAACTCAAGCCAGTCCCCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTCTTGCTGTGCACAACATGGGCTTGGATCAAATCAATCCACTGG---------------------------------------CTATGGTCAGTGTGGGTCCACTACTTGTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTCA---ATCTTGTTGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTATTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAGAACACTGCTTTGGGACAGTGTGAT------TCAGGTCACTCTTCTGATTGTG

a score=33567
s chr3            93201504 1874 + 160039680 GCAATTCTAGTGGAT---GTTGCAGACCAAAAAATGCTTCAAGTTCTTGTCAGGCAAGTAGATCACAGGGACAAGGAAATCAGTCTTGCCGTA------CCCAGTCAAACT---GTCAATCAGGAACTAGTGGAGGACAAGGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCT---------------------GGTT---------------------------GTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGC---------ATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAA---CAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGC---TGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACAT--GGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCA
s HiC_scaffold_1 138968521 1850 - 233722169 GCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCA---ATATGGATC---TGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGG------CTCAG---GTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGG---CTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCA---GGACAGACACCAAACTGTGAC---CAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCA---AGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCT--------------------TCCTCAGCA-CAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAG---------------------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATG--GCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAG---CCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGA---------TATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=34799
s chr3            93201593 1842 + 160039680 ACCCAGT-CAAACTGTCAATCAGGAACTAGTGGAGGACAAGGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTA---------------AACAATGTGG------------TCAACCACAGAACTGTGG------------------------------------AAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAG---GCATA------ACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGG---------ATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTG---CTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAG-CATGGGGGT-----------GGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTG------------------GCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGG-------------AAGCTG-----GACAT------------GGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATCAACAGAGAGAGTCTTTTCATGGCCAACATAGACAT
s HiC_scaffold_1 138968228 1957 - 233722169 ATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAA---GTCAATCCTCTAACTACGGAAAATATGGATCTGG---CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCA---GAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATC---AAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTT------GTTGT------------TCTAGTCATAGCCAACATGGATAT

a score=31687
s chr3            93201606 1784 + 160039680 GTCAATCAGGAACTAGTGGAGGACAAGGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAA-CAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGT--GGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACA---------TGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGT---------TATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGG---GTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCT--------------TGGCC-------------------------GCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGA------------------------------GAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCT------TATGGATA------------------------CGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138968512 1832 - 233722169 GTCAGTCATGCAGTTATGGTGAACAGAGTTCAGG------CTCAGAA---CAGTCTTCAAGATATAGTCAATATGGATCTGGATCA---GGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTA-------GTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA--------TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGT------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTC-----------AGC----------TTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCT--------------------TCCTCAGCA-CAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGG---TCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAG

a score=34554
s chr3            93201630 1803 + 160039680 AAGGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGA---------------------------------------AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCT---CATCAAA---AGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCA------------------------------CTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCT------------GGGTCT------------------------GAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGG-----------CTCTCAGCAG----------------CATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGC---------TCTGGCCAACACAG------------------------------------------GTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTC---------------------ATCTGGTTCTGGGCA------------------------------TCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGG---------------GACA------------------------GGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATG--------------------GGACAG----------GCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATCAACAGAGAGAGTCTTTTCATGGCCAACATAGAC
s HiC_scaffold_1 138967981 2085 - 233722169 AAGAGTATGAGTATGAATCAG---GTAAGGCCACaagtaataacaaaaataaattaaattcctAT---CAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCA-----ATATCAGGACAGTCATCA-------------TGCTGTGGTCAACATGGAC

a score=16718
s chr3            93201632 824 + 160039680 GGATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTC------TAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTC---------------CTGTGGACA------TTCTTCAA------GCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGG---------------------------------ACATGAATCAGGTCAG---------TCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTC
s HiC_scaffold_1 138969519 851 - 233722169 GGATACAGGTCTAGCTCAG---GTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCC---AGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCA-----GTCTTCTGC----CTTTGAGA---AACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT---------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCT---------------------AGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=5587
s chr3            93201633 1269 + 160039680 GATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGG------GGTGTAGTTCAAATGGATTTTCCAAA----GGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTA-TAGTCAACATAGGGTTGGCTCAGGGCAG--TCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTC---ATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAG--TCAGTCATC-TGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGG---------GCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTC--TCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCA------------------GTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTC-----------AGGCTCCCGTCACTCATC----TGGCTCTG----GGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGG---GCATCATGGTTCTGGCT-------------CTCAGCAGCATGGGGG-----AGGTTCAGG-------AAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCT-CATCCACTGCC----TAGTTCTGGTCAAAATGAA---TCTAGCTCAGGTCAGT---------CTTCCAG-----GTCTGAG-------CGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATG
s HiC_scaffold_1 138969058 1308 - 233722169 GATACAGATCCGGCTCAG---GTCAGTCCTACATCCACAATCAACATGGATTTGAACC---TGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAA---------GTCATTCTTCTGGCTTTGGT---CAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGA---------TCTGG-CATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCG---GTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAG------ATCAGG------CTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCT------------TCTAACTATGGTGGATACAGGTCTAGCTCAGG---TCAGTTGCCTCGCCAGGGCCA---ATGTGGGTCTGAATCCAGTCAATC---TTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG---TTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAG--ATCTGGCTTAGGTCAATC---------ACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCA-TCTGGTTTtagtcag---catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAAC---------------TCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=31032
s chr3            93201633 1347 + 160039680 GATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCA---------ACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGG---ATCTAA---ACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTG---------------------------------GAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAGCAGCATGGGGGTGG------------CTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGG------------------TTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGG------------------------------GAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATG
s HiC_scaffold_1 138968929 1437 - 233722169 GATATCAGTCTGGTTCAA---GTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCA---AGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAG------CAATCTTCCAGCAATGGTAGATAC---AGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTC---GGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCA------TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=5632
s chr3            93201634 680 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTC---------------------CTCTGGCTTTAAACAACAT---GGACATGAATCA----GGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGC---AGTCATG-TCACTATGGG------------CAGCATGGGTCCAGTTCTGGTCAGT---------CATCTAGCT------------------------------------------CTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATG
s HiC_scaffold_1 138969638 728 - 233722169 ACATGAATCTGGCTCAG---GTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCA-GAAG--AGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTA---GGTCAATCACCTAGTTATGGACAACA---------TGGTTC---TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAAT---CAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGG--------------TCAACATGGACCCAAC------TCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCT---TCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=13463
s chr3            93201634 645 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCA------------GTTCTGGTCAG---------------------------------------------------------TCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATC
s HiC_scaffold_1 138969677 693 - 233722169 ACAGGGGTCTGGCTCAGAAG---AGTCTTTTGGTTTTAGTCAGCACAGATCTGG---CTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT------------TCATCATCATGCTGTGGT---CAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCA---GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=17174
s chr3            93201634 762 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAG------TCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAG----------------------------TCAGTCC-----------TCTGGCTTTAAACAACATGGACATGAATCAGGTCAGT---CTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTC
s HiC_scaffold_1 138969599 771 - 233722169 ACACGGGTGTGAATCAAA---TCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGT---CAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTT------------GGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGT---CAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATG---------CCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=22380
s chr3            93201634 1191 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGG--AACAAA-------CTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGC------------TGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAG---GGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCA------------------TCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGG
s HiC_scaffold_1 138968573 1188 - 233722169 ATATGGATCTGGATCAG---GCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCA---AGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCA---GGTCAGTCTTTTGGTTTT---AGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGT---CAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCA------AGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTC---------------------AGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGG

a score=22183
s chr3            93201634 939 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGA------CATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCT------------------------------------------------CTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTC
s HiC_scaffold_1 138969404 966 - 233722169 ATATGGGTCTTCCTCAGCA---CAGTCTTCTGGCTTTGGCCAGCATAGATCAGG---CTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTA---GGTCAATCTTCTAACTATGGTGGATAC---AGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGG---------TGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=17183
s chr3            93201634 953 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCAC------------------------------GTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGG------------------TTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAG-TCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGC
s HiC_scaffold_1 138969170 950 - 233722169 ATATGGATCTGGTTCGGGAAG---GTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAG---AGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATA---GACCAATCCTGTAGCAATGGG---CAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAAT---CAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----------------------TGCCTC--------------GCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCC-AACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGC

a score=26591
s chr3            93201634 1154 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAG-CCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTG------------------------------GCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGT------------------TCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC------------------TCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAAT
s HiC_scaffold_1 138969209 1160 - 233722169 ACATGGTTATGGCTCAGGAG---AGTCCTCTAGCTTTGGTCAGCATGGATCTGG----CATAGACCAATCCTGTAGCAATGGGCAACACAGTTC---AGCTTCAGGAGAGACACCAAGCTAT---AGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGG---GTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTT------------------------------------GCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATG---------CCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAAT

a score=32312
s chr3            93201634 1426 + 160039680 ATATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTA---AACCTAGATCCTGT---AGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGA------AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGG---GTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGT---------------------------------AGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTG---TGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTA---------------------------------------GCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC-----------------TCAG-CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC-------TC-----------AGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGC---TCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGA
s HiC_scaffold_1 138968843 1525 - 233722169 ATATCGGTCTGGTTCAA---GTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCA---AGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGT---CAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATG------GTTCT---TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------TGGATATG------CCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAA

a score=37415
s chr3            93201635 1731 + 160039680 TATGGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTG------------------------------------CTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGT---------TATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGC---------TCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGC---ATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC------------------TCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCA------------------------------GTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGG
s HiC_scaffold_1 138968418 1794 - 233722169 TATGGATCT---TCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCA---GGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTA---GGTCAGTCATGCAGTTATGGTG---AACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCA---AGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCT--TCCTCAGCA--------------CAG-----TCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAG---AAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAG

a score=10221
s chr3            93201638 524 + 160039680 GGGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCT------------------------AAACAATGTG-GTCAACCACAGAA--------CTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCA---GTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATC
s HiC_scaffold_1 138969828 542 - 233722169 GGGTCTGAATCAAA---TCAGTCATCTGGCTATGGTCAACATATATCTGGATCA---GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCA---GCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=23301
s chr3            93201639 1033 + 160039680 GGTGTGTCTCAGAAGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGA---AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCC------------------------TGTGGA------------CATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTC---TTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAG-TCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCA------------------TCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATC
s HiC_scaffold_1 138969331 1039 - 233722169 GGTTTGGCTCAA---GTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCA---AATCAGTCTTCCAACTACAGCCAATATGGGTCT--------TCCTCAGC-ACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATG-GACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT---------------------GTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT---------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=9126
s chr3            93201652 550 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAA----TGTGGTC-AACCACAG------------------------AACTGTGGA----AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCA
s HiC_scaffold_1 138969800 571 - 233722169 AGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCA---AATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCA---GGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=17103
s chr3            93201652 1737 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGT-----GGA---AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAA---------------------ATGGATTTTC--------------CAAA-GGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTA---------CTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGG-----------GCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCG---TCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGC--------TCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGG---GCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTC---CCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGA-GCATGGATCCAGTTCTCATCCACTGCC----TAGTTCTGGTCAAAATGAA---TCTAGCT----------CAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGT---------CATCTAG------CTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCC-------GCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCT--------CATGG----------------------CAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAG--TGCTTGGA-ATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCA
s HiC_scaffold_1 138968471 1794 - 233722169 AGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGT---CAGTCATGCAGT---------TATGG---TGAACAGAGT--TCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGT---CAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGT--GGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT------TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCA-ATGGGCAACACAGTTCA--------GCTTCAGGAGAGAC--ACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGT---CACTCTTCTAGCTATGGCCAACATGTGTCTGGTTC---AAATCAGTCTTCCAACTACAGCCA---ATATGGGTCTT----CCTCAGCACAGTCTTCTGGC----------------------TTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCT--CAGGTC--AGTTGCCTCGCCAGGGCCAATGTGGG---TCTGAATCCAGTCAATCT---TCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAG-GTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACAT-GAGTCAGTTCCAGAAG--AGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATG------------CCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCA

a score=16035
s chr3            93201652 749 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAA------------------------ATGGATTTTCCAAAG------GTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGG------------------------------GTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCT
s HiC_scaffold_1 138969497 800 - 233722169 AGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGT---CAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAA---TCCAGTCAATCTTCAAGGTTT---AGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCA---GAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATT

a score=19084
s chr3            93201652 844 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCC------------AGTTCTGGTC---------------------------AGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGC------------------------------TCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCA------------------TCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCA
s HiC_scaffold_1 138969458 913 - 233722169 AGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGT---CAATCTTCTAACTATGGTGGATACAGGTCTAGCTCA---GGTCAGTTGCC---TCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGT---CAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=29604
s chr3            93201652 1696 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAA-----CAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACA------------------------------------ACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGG-----------GCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGC---------TCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGG---GTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC------------------TCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCT---AGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCT--------CATGG----------------------CAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGT
s HiC_scaffold_1 138968393 1762 - 233722169 AGGTAAGTCATCAAACTGTGGTCAGTATGGATCT---TCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGT-----------CAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCA---GGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGT--GGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATT------CTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAG---------------------TCTTCCAACTACAGCCAATATGGGTCT--TCCTCAGC-ACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGG---CCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGT

a score=22784
s chr3            93201652 1172 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCT---TCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGG-------------TGCTGT-----------------CTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC-------TC-----------AGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGG------------------TTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCT------------------------------TCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATG
s HiC_scaffold_1 138969146 1220 - 233722169 AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGT---------CCTCTAGCTTTGGT---CAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGT---CACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTT-------CTAAC-----------------------------TATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=34757
s chr3            93201652 1569 + 160039680 AGGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGA------AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTC----CAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAG-TCAGTCATCTAGTTCTGGGCATCATGGTTCTGGC---------TCTCAGCAGCATGGGGG---------TGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC-----------------TCAG-CAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGG-CAGCATGGAACTGGTGCTGGCA---------------------------ACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATC
s HiC_scaffold_1 138968780 1590 - 233722169 AAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCA---AACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCA---AGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGG---------------------------------CCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGAT-ATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCAT-AGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAG-TCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=26247
s chr3            93201653 1214 + 160039680 GGTCAGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAA-CAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATG------------------------AGACTGGACCCA------GTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTG------------------GCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAG------------------------------GTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATC
s HiC_scaffold_1 138969114 1256 - 233722169 GGTCAGTCCTCAAAGT----TCAGCC--ATTCTAGGTCA---AGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTA--GGTTTG-----GGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGT-TCAGCTTCAGGAGAGACAC--CAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGA-----------TCAGGCTT-------------------------AGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=27710
s chr3            93201657 1522 + 160039680 AGTCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGT-----TCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGA------CATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGC---------ATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACA---------TGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTA---CTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATC---------------------------------TAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGG
s HiC_scaffold_1 138968632 1510 - 233722169 AGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGT---CAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTA---GGTCAGTCCTCTAATTATAGAC-----------ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCA-----TGTGTC----TGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCT--TCCTCAGCA-------------------CAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCA--ATCTTCAAGGTTTAGCCAACAC-------------GGGTGTGAATCAAAT--CAGTCTTCTGCC----TTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGAC------AACATGGTTC---TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTC-AATATCAGGA--CAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGG

a score=14155
s chr3            93201659 581 + 160039680 TCCTCTAGATGTTGTCAACCTAAACCTAGATCCTGTAGCCAGTCTTCTAG------TCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAG------------------------------GGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTC
s HiC_scaffold_1 138969768 602 - 233722169 TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGT---CAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAA---------TCAGTCATCTGGCTATGGT---CAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACAT-GAGTCAGTTCCAGAAGA--GTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=16923
s chr3            93201676 903 + 160039680 ACCTAAACCTAGATCCTGTAGCCAGTCTTCTAGTCAGAGAGGGTATGGATCTAAACAATGTGGTCAACCACAGAACTGTGGAAGACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATA------------------------------------ACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTC---------------ACATAGTTCTGG---------------------------GCAT------CATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATG---------AGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGT---TCTGGCTCTCAGCAGC---------ATGGGGG---------TGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC
s HiC_scaffold_1 138968270 954 - 233722169 ACATAGCTCTGGATCA---AGTCAATCCTCTAACTACGGAAAATATGGATCTGGC---TGTAGTCAACCTCCTA---GTCAGAAATACCA-----TGAATCCAC----CTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATC---TTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATT------------------------------------CTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAA------GTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTC

a score=32245
s chr3            93201758 1632 + 160039680 AGACAACAAAGAATGGGTTCAAGTCACTCTTCTTG----CTGTGGACCA---TATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCA------AAGGTGA--TCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACA------ACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAA---CATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTC---------------------------------------AGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCT------------------GGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATG---------AGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGG-----------CTCTCAGCAG----------------CATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCA---TGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATG-----------GGACAGGC----------------------TCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGA-------------------------------ATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138968058 1788 - 233722169 AGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATC---TGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACAT--------GGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGG---TCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGT-TATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAG

a score=14733
s chr3            93201760 817 + 160039680 ACAACAAAGAATGGGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCA---AAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGG------------------------------------CAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATG---------GGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGT---------GCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGT------CAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGC
s HiC_scaffold_1 138968375 886 - 233722169 ACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCT---AGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCA---GGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATAT---AGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGT------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGC

a score=28914
s chr3            93201760 1630 + 160039680 ACAACAAAGAATGGGTTC------AAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCT--TCA----------------AGCTCTCATCA--------AAAG----------------GGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACA------------ACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCA------ACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCT------------CAGGGCAGTCATGTCAC------------------TATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGC---------TTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGC---ATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGG----------------------AACTGGTGCTGGCAAC--------------CAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAG-CATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138967937 1723 - 233722169 ACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCAT---TCAGGAA------GTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTC---------------AAGTTCA------TCTCCTAGCAGTGGTCAGCA------------------------------TGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACT-ATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAG

a score=8924
s chr3            93201770 942 + 160039680 ATGGGT-----TCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCA---------------------------------------AATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGG--CAGCATGGG-------TCCAGTTCTGGTCAGTCATCTAGCTCTGGGC---GTCATGGATCTGGCTCAGGTCAGT---CATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCT--TGAGGAGCA-----TGGGTCCAGTTCTCATCAGTCACATAGTTCTGG--GCATCATGGATCTGGATCACGTCAGTC---ATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGA---------------GTCTGGACGCAGTCAGTCATCTGGTTC-TGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACA
s HiC_scaffold_1 138969406 965 - 233722169 ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGT---CAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAA---GGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATC-AGGCCTGTC--TTCTAACCAAAGGCAA-CATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTC----AGTTCCAGAAGAGTC----ATCTGGTTTtagtcagcatggttctggctTAGGTCAATA---TTCTGGCTGTGGACA---ACATGGCTC-----AATATCAG----------GACAGTCATCATGCTGTGGTCAACATGGACC---------------------CAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAG---TATGGTTCATGTCCTTCA----TCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=22277
s chr3            93201773 978 + 160039680 GGTTCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAA------------------------AGGT---------------GATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGT------------------------------CACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCT---------CTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCA
s HiC_scaffold_1 138969375 996 - 233722169 GGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGG---CTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGG-----------------------------------------------CTCAATA-------------TCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=30258
s chr3            93201773 1615 + 160039680 GGTTCAAGTCACTCTTCTTGCTGTGGACCATA------TGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGT------GATCAG---CGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGC------------------------------TTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGG------------------TTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGC---------TCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGG------------------------------------------TTCTGGGCA---------TCATGGTTCTGGCTCTCAGCAGC---------ATGGGGGA---------GGTTCAGG--------------AAACTCAAC-TGGCTTTGGGGAGCATGGATCCAGTTCTCA-----------------------TCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATC
s HiC_scaffold_1 138968118 1765 - 233722169 GGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAG------AGTCTTCTAGCTATGGACAATATGGTTCTGGGTCC---AGCCATTTTTCTAG---GCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTG---AACCTGG--TCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATC---CAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--------TCAT-GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCC

a score=30995
s chr3            93201773 1371 + 160039680 GGTTCAAGTCACTCTTCTTGCTGTGGACCATATGG---------GTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATG---AGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTG---------------------------------GTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCT---------GGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGG-CAACATGG------------------------------GAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACA
s HiC_scaffold_1 138968940 1431 - 233722169 GGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACA---GCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAG---------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAG-TCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTAC---TCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=28407
s chr3            93201776 1169 + 160039680 TCAAGTCACTCTTCTTGCTGTGGACCATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCT---------GGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCT----CCCGTC--------------------------ACTCA---------TCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC------------------TCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATC
s HiC_scaffold_1 138969144 1226 - 233722169 TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCA---GGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT---------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=22802
s chr3            93201801 1588 + 160039680 CATATGGGTCTGGAGCAACTCAATCTTCTGGTTGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAA---GTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTC------------ACATAGTTCT------------------------GGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGG---------------------------TTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGA----------GTTCTGGGCACTCATCTAGCTCTGGCCAACACAG--------------GTCAGGCTCCCGTCACTC----------ATCTGGCTCTGGGAAG-CATGAGTCTGGACGCAGTCAGTC---------ATCTGGT---------------------TCTGGGCA---------TCATGGTTCTGGCT-------------CTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACT--GGCTTTGGGGAGCATGGATCCAGTTCTCATCCAC------------------------------------------------------------TGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGG-CAACCA--------------------------GTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCA
s HiC_scaffold_1 138968269 1810 - 233722169 CACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGG---CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATC---TTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATG-GCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATC----CACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCC---TCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCA

a score=25722
s chr3            93201833 1345 + 160039680 TGTGGCCAACAGAGAATGAGTTCCTGTGGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC---TCAGCAGC------ATGGGGGA---GGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAG---------------CTGGACATGGTCAG---------------TCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATG
s HiC_scaffold_1 138968970 1396 - 233722169 TATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCA---TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGG---TCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=17765
s chr3            93201860 1598 + 160039680 GGACATTCTTCAAGCTCTCATCAAAAGGGGTGTAGTTCAAATGGATTTTCCAAAGGTGATCAGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTG-AACAACATGGAACAAACTCAAGTCAGTCCTCTGG---CTTTAAACA------ACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGT-CACTATGGG-CAGCATGGG--------TCCAGTTCTGGTCAGTC---ATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTC---ATCTAGCTCTAGGCATAA---CAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAG-CATGGGTCCAGTTCTCAT----------CAGTCACATAG-----TTCTGGGCATCATGGATCTGGATCACG-TCAGTCA-----TCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---TCAGC------AGCATGGGGGTGGCTC------AGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGA---------ATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGA---CAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGT---------GCTGGCAAC---------------------------CAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATCAACAGAGAGAGTCTTTTCATGGCCAACATAGACATCCGCTATCCCAACATGAACAACA
s HiC_scaffold_1 138968124 1664 - 233722169 GGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTC----CAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACA-AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGG---TCAGCCCTCAAGCTTAGGACAACATGGATCTAGATC-AGGCAAATTTTCTAGCCACAGTCAACACAG--GTCTGGTTTAGGTCAGTCATG----CAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC------------CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCA--------ATCA----------CCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCA

a score=25865
s chr3            93201921 1469 + 160039680 AGCGTGCATCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTGCTGTGGCCAACATGG---TACTGCATCAAGTCAATCCTCAGGTTAT---AGTCAA---CATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGT-CAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATG---------GGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCT--------TGGCCG-CATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGG-----AGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCA-ACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138968107 1436 - 233722169 AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACA-GAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATC---------------------AGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCT-----TCA----------------TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGG--TCTAGTTCACAGCAATCTTCCAGC-AATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAG---AGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG

a score=16193
s chr3            93201929 1364 + 160039680 TCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAG---TCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAAC------ATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAA---CAGGTCAGGCTCA---AGTCAGTCATCTGGCCTTGAGGA------GCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGT-CAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATA------------------------------------ATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGC--------TCATGG-CAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGG----AATCTAGACCTGGTCAGTCTTCTAGC--------TCATGG-CAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGT------CAGTCTTCTAGCTCATGGCAG-CATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCA
s HiC_scaffold_1 138967953 1337 - 233722169 TCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTC----CAGCCATTT--TTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCT-----TCAACTG----------------GTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACA-GAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTAT------------------------------------------------------------TCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAG----GCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAG---GCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGC-AATGGTAGATACAGATCCGGCTCAGG---TCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACA

a score=14823
s chr3            93201929 472 + 160039680 TCTGGTTCGGGGCACTCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTTG---CTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCT
s HiC_scaffold_1 138969528 466 - 233722169 TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--------TCA-TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggct

a score=6763
s chr3            93201944 188 + 160039680 TCATCCTGCTGTGAACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAG---TCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGG
s HiC_scaffold_1 138969768 190 - 233722169 TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGT-CAGTTCCAG

a score=22522
s chr3            93201957 1433 + 160039680 AACAACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCA----CTATGGGC---AGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCAT---CAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC---------TCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCT-----------------------------------TGGCC-GCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGG---------AATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGC---------TATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAAC--CAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGG---------------------------ACATGGTC------------AGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138967942 1445 - 233722169 AAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGC---AAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCA--------------------------------AACA-CATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTC---------------------AGGCTCAGAA-----------------------------CAGTCTTCA----------AGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTA--GGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGG------TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAG

a score=21692
s chr3            93201960 1429 + 160039680 AACATGGAACAAACTCAAGTCAGTCCTCTGG----CTTTAAAC---AACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATG-GGCAGCATGGGTCCAGTTC---TGGTCAGTCATCTAGCTCTGGGCGTCA------TGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAG-CATGGGGGT-----------------GGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATG---------AATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGC---------TATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACA---TGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAG------GAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCA
s HiC_scaffold_1 138968062 1441 - 233722169 AACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTC----CAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCA--CCTCAACA-------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGC---------------------TTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT------------TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAA---GGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCA

a score=24181
s chr3            93201960 1429 + 160039680 AACATGGAACAAACTCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATCAGGTCAGTCTT------GCTGTGGCC---AACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAG---------------------CTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGA---------ATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGA---------ATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCA--GGAATCT---GGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACA---AGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAG---------------------TTCATGG------------------CAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCA
s HiC_scaffold_1 138968023 1441 - 233722169 aaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCT---------------GGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAA----GTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATC---------------------AGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGT---------------------ATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTA--GGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGT---CAGTCCTC---------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCA

a score=12163
s chr3            93201974 428 + 160039680 TCAAGTCAGTCCTCTGGCTTTAAACAACATGGACATGAATC----AGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTC
s HiC_scaffold_1 138969144 431 - 233722169 TCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCA-TCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATC

a score=6994
s chr3            93201998 194 + 160039680 CAACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCA
s HiC_scaffold_1 138969558 197 - 233722169 CAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACA

a score=11433
s chr3            93202000 579 + 160039680 ACATGGACATGAATCAGGTCAGTCTT---GCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGG---------ATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGG---------GTCCAGTTCTCATCAGTCACATAGTTCTGGGC---ATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAG---------TTCTGGGC---ATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC
s HiC_scaffold_1 138968726 615 - 233722169 ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTC

a score=16379
s chr3            93202007 1293 + 160039680 CATGAATCAGGTCAGTCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCA---------------------CGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTC---ATCTGGCTCTGGGAAGCA---TGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGT--------------TCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCAC---TCATCTAGCTCTGG--------------CCAACACAGGTCAGGCTC-CCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTC---ATCTGGTTC------------------TGGGCATCATGGTT---------CTGGCTCTCAGCA---------GCATGGGGGA------------GGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCT-----------CATCCACTGCC----------TAGTTCTGGTCAA------------AATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAG-CATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCT
s HiC_scaffold_1 138968349 1416 - 233722169 CATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTG--GTTTTAG-TCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGG--ACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGT---GGACAGCA---TGTGTCTGGATCAAACCAGTC---TTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACT-ATGGTGGATACAGGTCTAGCTCAGG---TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT

a score=7319
s chr3            93202022 267 + 160039680 TCTTGCTGTGGCCAACATGGTACTGCATCAAGTCAATCCTCAGGTTATAGTCAACATAGGGTTGGCTCAGGGCAGTCATGTCACTATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGT
s HiC_scaffold_1 138969927 267 - 233722169 TCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGT

a score=8470
s chr3            93202106 286 + 160039680 TATGGGCAGCATGGGTCCAGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATG
s HiC_scaffold_1 138969747 277 - 233722169 TATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATG

a score=18796
s chr3            93202124 1230 + 160039680 AGTTCTGGTCAGTCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCT------------------------CAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTC---TGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAA---------TGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATC---AAGTGCTTGGAAT------CATGGAAATGAATCAGGTCAGTCT
s HiC_scaffold_1 138967839 1164 - 233722169 aatgcaGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG-CAGCTATGAAAAACAAG--ATTACTGGTCAAATTCAAAT---------GACCTTA------------------TTAGTCAACAACAAAAAT---------ACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGC---AAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCT---------------GGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAG------------------------AGTTCA---------------GGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGG---TCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCT

a score=19463
s chr3            93202136 1216 + 160039680 TCATCTAGCTCTGGGCGTCATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAA---GTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGG--GACA-------GGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATG---------AATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGT--CAGGAATCT---GGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGT
s HiC_scaffold_1 138968361 1183 - 233722169 TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATC---TTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC---------------------AAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAG-------------------ACTT--CTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGT--AGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAA--AGTTCAGC----CATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAG---ACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT

a score=5324
s chr3            93202154 200 + 160039680 CATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGA
s HiC_scaffold_1 138970176 191 - 233722169 CATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGA

a score=17960
s chr3            93202155 949 + 160039680 ATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGT--------CAGTCA-------------------TCAAGCAG---TGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTC
s HiC_scaffold_1 138969406 964 - 233722169 ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTC---------------------TTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--------TCA-TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAG---TCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=23671
s chr3            93202155 1245 + 160039680 ATGGATCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGG----TCTGAGC---AGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGG---GAGCATGAGTCGAGTTC---TGGGCACTCATCTAGCTCTGGCCA------ACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC---------TCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGG--------CAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGT-----------CAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGAC---------ATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAG-CATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATC
s HiC_scaffold_1 138967948 1249 - 233722169 ACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGG-------------------------GTCCAGCCATTT--TTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAG--CATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTA--TGGCCGACACAGAACTGGATCAAGCCAATC------TTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAG-CAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTG-----GTTCGGGAAGGTCATC

a score=6972
s chr3            93202160 249 + 160039680 TCTGGCTCAGGTCAGTCATCTAGCTCTAGGCATAACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAG
s HiC_scaffold_1 138969138 249 - 233722169 TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAG

a score=14460
s chr3            93202194 1196 + 160039680 ACAGGTCAGGCTCAAGTCAGTCATCTGGCCTTGAGGAGCATGGGTCCAGTTCTCATCAGTCACATAGTTCTGGGCATCATGGATCTGGATCACGTCAGTCATCTGGGTCTGAGCAGCATGGTGCTGTCTCAGGTCAGTCATCTGG----CTCTGG---GAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGT---CACTCATCTGGCTCTGGGAA------GCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAG---------GGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGT--------TCATGGCAG-CATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCA---TGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138967948 1172 - 233722169 ACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGAT---------ATGGT------------CAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGC---AAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAG----TCAGAAA-----------------TACCATGAATCCACCTC---------AACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTC---AAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAG

a score=13297
s chr3            93202308 1046 + 160039680 AGCATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGC------------------ATGGGGGTGGCTCAGGCCAGTCAACTGG----CTTTGG---GGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCAT---CATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGT-CAGA----AAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAA---------TGAATCAGGTCAGTCT
s HiC_scaffold_1 138967945  971 - 233722169 AATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTT------TTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCT--------TCAA-------------------------------CTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACA---------------TCAGTCA---AGTTCAAGAGAG------------------------TCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--------GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCT

a score=17888
s chr3            93202310 1067 + 160039680 CATGGTGCTGTCTCAGGTCAGTCATCTGGCTCTGGGAAGCATGAGACTGGACCCAGTCAGTCATCTAGTTCTGGGCATCATGGTTCTGGCTCTCA------------------GCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGA---------GTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGA---------GTCTGGACGCAGTCAGTCATCTGGTTCTGGGC-------------------------ATC--------ATGGT---------TCTGGCTC---TCAG---------------CAGCATGGGG-------------------GAGGTTCAG--------------GAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATC
s HiC_scaffold_1 138968727 1184 - 233722169 CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATC---AAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TCATCATCATGCTGTGGT------CAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTC

a score=18682
s chr3            93202367 932 + 160039680 CAGTCATCTAGTTCTGGGCATCATGG------------------TTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCA----TCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATC
s HiC_scaffold_1 138969423 947 - 233722169 CAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--------TCA-TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCT-------GCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=10866
s chr3            93202372 544 + 160039680 ATCTAGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTC---TCAG---------------CAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGG-CAACATGGGACTGGCCCAGGT
s HiC_scaffold_1 138969644 550 - 233722169 ATCTGGCTCAGG---TCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAG-TCATAGCCAACATGGATATGCCTCAAGT

a score=14489
s chr3            93202393 864 + 160039680 TTCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAA---------GGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGC--------TCATGG-CAACATGGGACTGGCCCAGGTCAGTCATCAAG---CAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCA-ACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGA------ACCATCCTCTAGTTCATGGCAGCATGG
s HiC_scaffold_1 138968480 858 - 233722169 TTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTC---------------------AGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGC-AATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGG

a score=14032
s chr3            93202394 997 + 160039680 TCTGGCTCTCAGCAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGG----CTCTGG---GAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAA---TGAATCTAGCTCAGGTCAGTCTTCC---AGGTCTGAGCG------GCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATG----AATCAGGACCAGATCAGG
s HiC_scaffold_1 138967971 938 - 233722169 TCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCT---------------------GGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTC-CAGCCATTT-----TTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGG---------------------------------------ATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGG---CCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAG

a score=4147
s chr3            93202406 227 + 160039680 CAGCATGGGGGTGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATC
s HiC_scaffold_1 138970173 197 - 233722169 CAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTT---------------------CTAGTTTTGAGCAACATGAATC

a score=8001
s chr3            93202417 937 + 160039680 TGGCTCAGGCCAGTCAACTGGCTTTGGGGAGCATGAGTCGAGTTCTGGGCACTCATCTAGCTCTGGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGC---AGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCA---GGTCAGTCATCTGGCTTTGGGCA------ACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTG---------GCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCT
s HiC_scaffold_1 138967955 874 - 233722169 TGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTA-CTCAGAGAAA-----------ACACAG-CAGT-----AGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGC---AAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAG------------TCAGAAATAC------CATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGC--TTAGGAC----AACATGGATCTAG---------------------------------ATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTT-ATGGT-GAACAGAGTTCAGGCTCAGAAC-AGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT-ATAG--ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCT

a score=6644
s chr3            93202481 390 + 160039680 GGCCAACACAGGTCAGGCTCCCGTCACTCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGA
s HiC_scaffold_1 138886919 357 - 233722169 GGACAACAGGAAATAAACTCAAGCCAGTCCCCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTC------------------------TTGCTGTGCACAACATGGGCTTGGATCAAATCAATCCACTGGCTATGGTCAGTGTGGGTCCACTACTTGTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTCAATCTT---GTTGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTATTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAGAACACTGCTTTGGGACAGTGT------GATTCAGGTCACTCTTCTGATTGTGAACACCAACAACCAAGA

a score=5963
s chr3            93202508 291 + 160039680 TCATCTGGCTCTGGGAAGCATGAGTCTGGACGCAGTCAGTCATCTGGTTCTGGGCATCATGGTTC------------------TGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGT
s HiC_scaffold_1 138969885 309 - 233722169 TCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGT

a score=13198
s chr3            93202563 773 + 160039680 ATCATGGTTCTGGCTCTCAGCAGCATGGGGGAGGTTCAGGAAACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGA
s HiC_scaffold_1 138969616 752 - 233722169 ATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTAC---AAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAA

a score=10302
s chr3            93202604 786 + 160039680 AACTCAACTGGCTTTGGGGAGCATGGATCCAGTTCTCATCCA------CTGCCTAGTTCTGGTCAAAA---TGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATA-TGGCTCAGGTCAAACATCTAG----CTCTTGGCCG---CATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAG---ACCTGGTCAGTCTTCTAGCTCATGGCAA-------CATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCT--------CATGG----------------------CAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138967878 834 - 233722169 AACTCAAGCAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTA-CTCAGAGAAAACACAGCAGTAGCTCTAGTCAT-CATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTC---TAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTT-GTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAA---GTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAG

a score=9762
s chr3            93202618 768 + 160039680 TGGGGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAG---------GTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGG---GTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAG------GAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCA------------------GGAAGCTGGACATGGTCA---GTCTTCTAGCTCATGGCAGC---------ATGG--AACTGGTG-CTGGC---AACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGA
s HiC_scaffold_1 138968885 810 - 233722169 TGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT------------TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGA

a score=9296
s chr3            93202621 769 + 160039680 GGAGCATGGATCCAGTTCTCATCCACTGCCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAA---CATGGGTCAGGTTCTCAT---CAGTCATCTAGCTCTGGGCATAATGAATATGGCTC------AGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGG-CAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGAT------------------------CTCATCAGTCAGA---------------AAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAG
s HiC_scaffold_1 138968105 721 - 233722169 GGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTC----CAGCCATTT--TTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATC----------CACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGG---------------------------------------ATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTT------------------------------------------AGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAG

a score=7269
s chr3            93202649 1356 + 160039680 CCTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACA-AGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATCAACAGAGAGAGTCTTTTCA------TGGCCAACATAGACATCCGCTATCCCAACATGAACAACACTCACAGTTTGGATATGGTAGATCTCCAAGATCACCAGTACACCCTGAGTCCAGTGAGGGTGAGGAACACTCAGTAGTCC-----CACGGAGATATTCTGGATATGGTCACGGTCAGGGTCAGGCAGGACATCAACAGAGAGAGT---------CAGGGTATGGCCAACGGGGCAGACCTCAAGGGCCCTCTCAGGACAGCAGTAGACAGCCTCAGGCCGGTCATGGACAGCCCTCACAGTCTGGCTATGGCAGATCTCCAAGGAGATCACAAGTCCACCCTGAGTA--CAGCGAGGGTGAGGCACACTCAGAAGTCTCACAGAGACATTCTGGATCCAGTCACTGTCACAGTCAGGGTCAGGGTCAGGCAAGACATCAACAGAGAGAGTCTGTGCATGGCCAACGGGGCAGACCTCAAGGGCCCTCTCA------------GGACAGCAGTAGACAGCCTCAGGCCGGCCAGGGACAGCCCTCACAGTCTGGCTCTGGCAGATCTCCAAGGAGATCACCA-GTCCACCCTGAGTCCAGTGAGGGTGAGGAACACTCAGTAGTCCCACAGAGACAT
s HiC_scaffold_1 138886949 1125 - 233722169 CCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTCTTGCTG---TGCACAACATGGGCTTGGATCAAATCAATCCACTGGCTATGGTCAGTGTGGGTCCACTACTTGTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTC------------------------------------------AATCTTGTTGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTATTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAGAACACTGCTTTGGGACAGTGT------GATTCAGGTCACTCTTCTGATTGTGAACACCAACAACCAAGAGAC-ATCAG-----------------GCATAAACACATTAATCACGGACAATC----------------TACACAGTCTGGTTcaggaaaaaaagataga----agCAC------AGAGTCTCAGAGCA---------AAACCAGCAACACAGAGAAAGA-CTCCCAATTCCCAAA----TGGACACTCAGGATC---CCCGGAGCACCTCACTGGATC---------------------------------TGCACATGGAGAGTCAGAATCCAGA---GTTCTGCCAGGAAG-------------------------------------------ACAGAGAACTGCTCACCAGCAG-TCA--AGAGATATGACCAG-----GCATTCCCAGTCAGGTGAGCAACA-----ATTCCCTGATTCTGCAGTGACACCA-----------GACAGAAGAAGCAGCCATGTTCACAG--------TGAGTCCAGCAGCAATGAGGAACACTCAG-AGTCCACAAACACACAAACA----------GGAGGCAATAAGCACCAGGCACAATCTTCACATGGAGAGTCACAATCCACAGGTCAAGGAAGACAGTACACTGCACATCAACAATCACAAGATACCAGCAGACA---------TGGACATAGACAAGCCACACAATCTGGCTC--ACAAACAACTGGCCAAATTGCTGGTTCTCACAGACAAGCCAGTGACACAGAGGAATACTCGCAAGTCACACATGGACAATCAGGGTCCCCTCAGCACCACA------------------CTGGACCTCAACATGGAGGGTCAGCATCCACAGATCAAGAAAGA---CAGAGAACTGCTCACCATCAGTCAACAGACACCACCAGGCATTCCCAGTCAGGTGAGAGACAATCCCCTCATTCT-GCAATGATACCACACAGAAGAAGGCACCATTTTCATAGTGAGTCCAGTGTTAGTGAGGAGCGCTCCTACTCCTCAGACAGACAT

a score=4920
s chr3            93202650 113 + 160039680 CTAGTTCTGGTCAAAATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAG
s HiC_scaffold_1 138968638 105 - 233722169 CTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTC-----TTCATCAG

a score=13339
s chr3            93202664 713 + 160039680 AATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAG----------GTTCTCA-----------------------TCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATC
s HiC_scaffold_1 138969021 743 - 233722169 AGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAG---ATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC

a score=11305
s chr3            93202665 688 + 160039680 ATGAATCTAGCTCAGGTCAGTCTTCCAGGTCTGAGCGGCATGGGACAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAA------TGAATATGG---CTCAGG------------TCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTC
s HiC_scaffold_1 138968110 604 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCT---------------GGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACC---------TCAACAAGTTATGAA---------------------------------------CAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAA---ATTTTCTAGCCACAGTCAACACAGGTCTGG---------------------------------------TTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTC

a score=14457
s chr3            93202710 676 + 160039680 CAGGCTCAGGTCAGTCATCTGGCTTTGGGCAACATGGGTCAGGTTCTCATCAGTCATCTAGCTCTGGGCATAATGAATATGGCTCAGGTCAAACATCTAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCAACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAAGCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGA
s HiC_scaffold_1 138969295 664 - 233722169 CAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGT---CAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGG--------TTCTTCA-TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGA

a score=8050
s chr3            93202792 608 + 160039680 CTCAGGTCAAACATC----TAGCTCTTGGCCGCATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAATCTGGACATGGTCAGTCTTCTAGCTCATGGCAACATGGGACTGGCCCAGGTCAGTCATCAAGCAGTGAAGAGGAGGAATCTAGACCTGGTCAGTCTTCTAGCTCATGGCA------------ACATGGGAAAGGCTCAGGTCAGGAATCTGGCTATGGAGAGCAGGAA------GCTGGACATGGTCAGTCTTCTAGCTCATGGCAGCATGGAACTGGTGCTGGCAACCAGTCATCTGGCTATGGAGAGCACAAGTCTGGACCAAGTCATTCATCTAGATCTTGGCACCATGGGACAGGCTCAGGTCAGTCATTGGGATTTGGACAGCATGGGAAGGGATCTCATCAGTCAGAAAGTTCTGGACATTATGAATCTGTCTCAGAACCATCCTCTAGTTCATGGCAGCATGGGAATGGGTCAGGTGAGTCTTATGGATACGGAGAGCATGAATCTGGACATGGTCAGTCATCAAGTGCTTGGAATCATGGAAATGAATCAGGTCAGTCTAATGGCTTTGGGGAGAATGAATCAGGACCAGATCAGGAGGGATATC
s HiC_scaffold_1 138968053 586 - 233722169 CTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCT--CAGGA-------------CAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCA--------TTCAGGAA----GTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCT---GTAGTCAACCTCCTAGTCAGAAATACCATGAATCC--ACC-------TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCA-----AGTTCAAGAGAGTCATC

a score=63784
s chr3            93218897 3552 + 160039680 AGCCAGGGACAGCCCTCACAGTCTGGCTCTGGCAGATCTCCAAGGAGATCACCAGTCCACCCTGAGTCCAGTGAGGGTGAGGAACACTCAGTAGTCCCACAGAGACATTCTGAATCCTG--------TCACTGTCCTTGT-CATGATCAGGCAGGACATCAACAGAGAGAGTCTGTGCATGGCCAACGGGGCAGACCTCAAGGGCCCTCTCAGGACAGCAGTAGACAGCCTCAGGCCGGCCAGGGACAGCCCTTACAGTCTGGCTCTGGCAGATCTCCA-----AGGAGATCACCA-GTCCACCCTGAGTCCAGTGAGGGTGAGGAACACTCAGTAGTCCCACAGAGACATTCTGGATCCGGTCACGGTCACGGTCAGGGTCAGGGTCAGGCAGGACATCAACAGAGAGAGTC----TGTGCATGGCCAACGGGGCAG--------ACCTCAAGGGCCCTCTCAGGACAGCAGTAGACAGCCTCAGGCCGGCCAGGGACAGCCCTCACAGTCTGGCTCTGGCAGATCTCCAAGGAGATCACCAGTCCACCCTGA--GTCCAGTGAGGGTGAGGAACACTCAGTAGTCCCACAGAGACATTCTGGATCCGGTCACGGTCACGGTCAGGGTCAGGGTCAGGCAGGACATCAACAGAGAGAGTCTGTGCATGGCCAACGGGGCAGACCTCAAGGGCCCTCTCA------------GGACAGCAGTAGACAGCCTCAGGCCGGCCAGGGACAGCCCTCACAGTCTAGCTCTGGCAGATCTCCAAGGAGATCACCAGTC-CACCCTGAGTCCAGTGAGGGTGAGGAACACTCAGTAGTCCCACAGAGACATTCTGGATCCGGTCACGGTCACGGTCAGGGTCAGGGTCAGGCAGGACATCAACAGAGAGAGTCTTTGCATGGCCAACGGGGCAGATCCCAAAGTCCTTTTCATCCATCACATAGTATCCATTGGCAATCAAAGTGTACCATAAGCAAAAAATCTAGTAGACTTTCTGGCCATTATGGAAGAAATCATTTTCAATCAACCATTAGTGGTAACCA---ATATGATTCCAGTCAATCCTCGAGACATGGCAGCTATGGGCCTCAAGACTATGACTATGGTCAGTCTGGGTATGGACCTTCTGGAAGGTTGAGAAGTAACAGCCAGAGTTCTATTCCTTTCAGTTCTGCACATAGAGCAACAAATATGGAAGTCTTACCTTGTGGACAGTCTTTCTCTCCTTCTGATCATGTAGGTACCAAAGCAAATGAACAAATTGGAGAGCTAGTTTTTAAATACAGAGAGTCAGAAACAGGTCCTGACCAGTCAGTTGATTATTACAATCTTACTGAGTCCAATAGTACAACTAGAGGGCATGAGTGTAGTCATGGCCATTCTGTAGTAGTACCTGAACATTCAGATGACAGTGATTTCAATTATGGTCACAGTTATAATGGTAAACAACAAATTTGTCAGAGCCAGCCAACTGTCCAGTCTTGTTTTGATGATAGCCAATACATATTATTTCAGAAACATTTAGAATCCCCTTCATTTGGAAATCAGTCTGGATTCAGCCCTAATGAAAGGCAATTATATACCTGTAACGAATCAATCGATAGCTATCATCTGTCAAGTGATAGCAACAATAGAAATCAAATATATTCTTCCAATAACTCTTTTCCCAACCTATACTGCATTGGAACTGAACA------GTGTATATATTTACCAAGTGCAACCATATTGGGTGAGGGAACAGAAGGACAGGAGCCTGGATATACCCAACCAGGGACCATCTGTAAATATAATCAATTTTTAGATGGCAGG-----AAGAG----TAGAACCAGAGGTAACCATGAAACGGGGAAAATGAAGTCAGGTTCTGCCTACTTAGATAGCAATACTCCGCTATATACATATGTCCAAGAACAGAAATCCTACTACTTTGAATGAAAAGCCAGTATAATATATAATAA---ATGATAAGTACTAAACCCAAGGAGTAAGGAGATGCTTAGTAAGACAAAACATTTACCATGACTCCTTATTTTGGCAGTAGGTGGTATA---------TTTCATTTTAACTGTA-----TTAATATTTTAATGTTTGGTGCAAGATCTGTTTGTAGGTCTACATAGTTATTTAGCTTCTTGGATAGAAGAAACTAAATGAAAAAAGTAAAATATATTTGAGCCATAGTCAGAAATATATGATTAAAATA-TATATGATTTTGGTGTTTGGGATTTAAAAATCAACATTTTACAATTATTTGAGGC-AATCATTTGGTTTTTCTATATGCTGTATTAAT--TTATGGTTAAAAACCTATCCAAGAAGC-AAGGGACATACTTTTAGAAGTCAGAGTTTTTCTTGTAGTATTATAATAAATTTCATGTCCTAAACAAAAAATTTGAT--------TGTTTCCTGGTTGGGGATTCACAATATTTTCATC-TTTTGTGTCACTTGTGGTATTCTGTATTACTA---TTTAATTTACTGTCATGATTTCCTAGATAGAGGAATCAGAAAATTGTATCAGATTAAAATTGCCAATAAATGTTTCATCTGAATATATA-TTTATCGTTTTTCT---TTTTATTGCTACAAACATA-ACTCCTTTCCAAGTA----GGCAGTTGTACATTTTTTTC------------------------TAAAATACTCTAATGCTAACAAT----AGAGTCAAAAGAAAGGGAGAAAATCAACCACATCTAGTCCTTTCCTCCCTTCAATTACTATCCATATTATTTATAGTAAAAATTTATCCTGAATTAACTGGGTGTCCTTTAATTAATCACTATCAACACAGCCAACATT---AAATATAATTCTAAGTGGCCATTTCCTAATATATTACAAGTTCTGGGAATAAGATTTAT-TGTTATAGA-CTTTCTCTGTTAAATACATGAATAAAAATATCCATGACAGTGGAGGTT-ATGGGAACCTTACATTTTCTATAGAATAAAAGCAATTAAAACAT------------TCCCAACT----AGGAAAAAATGCACA--------AATTTGTAA--------------------------ACATACAAG--ATATTAACTTCAGCAGAGTTTACTACTACTATTATAA--CAGTGACAATGTCCAGAATGTCAAGACTAGTTTAGAGCTTTAAAATTTTTTGTAAGTTATTAGTTTCAAAGAAAACACTAATCAAAGATTATTTAGTAAAAGACCAACAATTTCCTAAA--CATAATTTTATGTTCTACTCCTCTTTTCCCCTAATTTAAGCTCTTTTCTTGACCTTTGTTGTGAAATTCACACTAAAGAGAAATCCCTGGGTGAGTATATAAAACCAGTAACCCTGACATTTCAAATTGGTAGAATTGAGGTACCATGC---CATCATCTCTTCTGCAAGGAAGAAACACAACAGCAG--GCTTAGATATATTCTTAGGTGAGTGGCTATGGGAGAA--------------CAGAGTGAAACA------TTGTAAGAGTCAGAGACCTGGGACAGACCAATAGGGAGAAACAAAG-ATTCT-GGTATCTGCTCCA-CAACTTGAGGCAACGGGTATTCGCAGTCACATGTAGGTTGTGGCCTTTGCAGAGTAAGAG-TGAGAGTCCTACCAAGCTCTACCACCATGGATGTGGACAATCCTACCTACTGGAATATTTCACAACACTCACAGAGCTTTACCTAGAc-----aataaacgaaaatctgtcca
s HiC_scaffold_1 138887297 3591 - 233722169 AATCACGGACAATCTACACAGTCTGGTTcaggaaaaaaagatagaagCACAGAGTCTCAGAGCAAAACCAGCAACACAGAGAAAGACTCCCAATTCCCAAATGGACACTCAGGATCCCCGGAGCACCTCACTGGATCTGCACATGGAGAGTCAGAATC----CAGAG-----TTCTGCCAGGAAGACAGAGAACTGCTCACCAGCAGTCAAGAGATATGACCAGGCATTCCCAGTCAGGTGAGCAACAATTCC------CTGATTCTGCAGTGACACCAGACAGAAGAAGCAGCCATGTTCACAGTGAGTCCAGCAGCAATGAGGAACACTCAGAGTCCACAAACACACAAACAGGA---GGCAATAAGCAC---------------CAGGCACAATCTTCACATGGAGAGTCACAATCCACAGGTCAAGGAAGACAGTACACTGCACATCAA---CAATCACAAGATACCAGCAGACA---------TGGACATAGACAAGCCACACAATCTGGCTC--ACAAACAACTGGCCAAATTGCTGGTTCTCACAGACAAGCCAGTGACACAGAGGAATACTCGCAAGTCACACATGGACAATCAGGGTCCCCTCAGCACCACA------------------CTGGACCTCAACATGGAGGGTCAGCATCCACAGATCAAGAAAGAC---AGAGAACTGCTCACCATCAGTCAACAGACACCACCAGGCATTCCCAGTCAGGTGAGAGACAATCCCCTCATTCT-GCAATGATACCACACAGAAGAAGGCACCATTTTCATAGTGAGTCCAGTGTTAGTGAGGAGCGCTCCTACTCCTCAGACAGACATGCAGAGCCTTCCCTCAACCCAGGT------------------GAATCTCAGCAGA---AGCATTTGGGTT-CTAGTCAGGCACAT--------------------TTACCTAATACTCACTCTCATTCAAGAGATAGCATCAGAAAGCATTCATCTAGCCTTCACACTCAGTATGGATCAAAGCACAGCCAATTCCAAAATAATGGCAAACATAAACATGGATCACAACAAGGTTGGAGACATGGTAGCTATGGTTCTTCAGAGTATGACTATGGCCAATCTGGATATGCACCTTCTCAGGCCAGCAGAACTAATAGTCAGAATTCTAGCTCTCTGAGATCTCCAGACATATCTACAAGTACAGAAACGTCTAGCTATGGAAAATCCTTGTCCTTATCTGACCATTTTGAGTCCAACAGAATTGAAGGAATAAGAGAATCAGATTCTTTTCATATACTTTGTGATACAATTTATTCCCACTCTCTTAACTCCTACAATCAGTCTGAGTCCG---GTATATCTAAAAGTGAAAGATCTAGTCATGGTCAGCATTTTGTAACTGCTGAACAGTCAAGTGACCCTGATTTTCAATGTGAATATAATAGAACCAGAAAGCAATCATATACTCATAGCCAGTCTAATGGTGACTCTGATCCTAGCCATAGAGACTACATTCCGTTTCATGAACATTTAGAATCTAGATCAAGTAGAAGACAATCTGGTTTAAACACTAAAGAATGGCAAGTACTTAGCCATAGCCCATCAATTGCCAGTGATGAGCTTCTGACTGACAGCAGGAACAGAAGTCAAAGATCTATTTCTAATTCCTCTATCTGGAGCCAAGAACCTGTGGAAACTGAGGAGTATAGGTGTAAATATTTATCACGTACAGCTACATGGAATGGGGGAAGGCAATGGCAAAATTTAGAATCGAATCCATCTGAGTGTGTCAGAAGATACAGTCAGCATTTAGTTGATAATCAGCCAAGAGTCTCTGAGGCCAGAGGTTACTATGGGGGTGGGAGAACTAACTCACGTTGCTTTTACTCAGATAGCAACACTCCACTCTACAAATATGTCCAAGAACAAAggcattatttctttgaataagaAAGtagtagaaaacaaaagaatccaTGATAAGAACTAATGCAAAGAAgaagtaaga-----aacagaaaaagatatgTAATGTAA-TCTTTTTCTTGGTAGTAGG-GCTATATGTATGTTTTTTCACATGAACTGTATTACTTTACTCTATTAATTTTTGATGCAAGATCTTTTCATAGGTTT-CATAGTCACTAAACTGTTTGGATAGAAAATTATGAATGGAAGAAGAGATCAGCAGTTGGGATTACATCagaaatatatgataaaatgatTATATGTTTACAG----------GTAAAAgtgagtatttaaaaattttctggaaCTCAAAATTTGgattttcctgattttgttttaatggTTATA---ACAAACCTATCCAAGAAGCTAAGAGACACA-GCTGAGGAGCTAAAATTTCTTCAGTAACATTATAAGTTAAGTTATAACATTAAGTAACATTATAATACAATTTGCAGTTCCTAGATGAAgattcagaatattttcatcattttaagtcACTACTGGAGCTCTGTACTACCACATTTGAATTTATTGTCATGCTCTCCTAGTTATAAGAATCATAAAACTATATTGCATTAAAACTGACAATAAACTT----TATAAATATACAGTTTATCTCCTTTCTCACCTCCATGAACACAAACATAGATCCCTGTCTTGGTATAAGGGgagctgaacattttcttctatctCTGGACATCTAGATGGCAGTAAAGTGCTCAAATGTTAGTAATTTAAAAACTCCAAAGAA--GGCAAAAGTCAATGATATCTGGGTTTTTTC---------------TCAGTCTTAATAAAAGAAAGACTTTATACTTAGTGGAGGCCGGTGCTTTTGCTCAATCATGATCATCACAGCTAATATTATCAAATATAACCCCAAGTGACTATTTCCTAACACAGTCCAAGTTCTAGGAATAAAAATTATGCagtatggatttttttctctcaaaaatattACTTGAAATATCCTTACCACTGAAAGCTAATACAGCCCTGAGATTtcatataaaaggaaaacaattaaaatatattaaacatatattCCTGCttgaaatgagaaaatgtaaaTCTATTGTGACtagtaagagaaaaaaacaaaaagcagaaaaatatgtacaaattatATTAACTTCAGCAGAA-ATATTACTATCATTAAAAACCAAAGATTATTTTCAGAAAGTTGGACCTAATAAAGATCATTCTCCTAATTTGCAGGTTA--------AGAGAAAACGTTAAGAAAATATAAT-------------GGTAATTCCCTAAAATCAGAACTTGGTATTCTA-TTCTCTTTGCCCTCAGATaaagctgtttt-----tcttctttttggaatTCAAATTAAAGTGAAAATCATCAAGATGTGTATAAAATCACTATCCCTGACATCACAAAATAGCTGAATGCAGGCACACAACAATCACCACCTTTTCCACAAGGAAGAACCAAAGCAACAAATGTGTGGCTGCATTTTGAGATGAATAATCATAAGAGAAGACTGAAaatcagcaagagagagacagggaccTTGTAAGCTTCAGAGATTTGGAAAAGagcataa---agaaacaaaatatcctAAGTATCCATCACACCAACTTGACAGCTCAGGGAGAGGGAGACACCAGTTGGCAGgagtaaaagaaaagagagagaagggagaacaaAAAGACTCTATATATGTGGACACTGGGAATCCCAGCTATTGCAAAGTTTCGTAATACTCACAGATTTGTGCTTAGTTATATAAGTAATCTGAAGTCTGCACA

a score=42437
s chr3            93238789 2005 + 160039680 TGAGTGCAACCTATGTTGTATATGCTAATGTAGCCAAAGATGAGCATGTAAGCTCCGAGGGAACTGTGAAGAAAA--------AGTAGAAAAATAGAAATAAAGAGAGACATGG-------TGGATTAGACTGGAAATTAATCAAGCCATCAAAGAGAAAGTAGCTTTCTGCACAATTAACTTGTTTGACAAAATTAGGC------TAGTT---------GAATTTGTTTTAAGGAACATCTAAAATGATATTTGGGGGACAG--CAAAAGAATGTGAGAAAAGCTCTATTTACAG-ACACAG-----CACATAGTAAT-CACGGGTTTGAGGTTTGTATTATGAAGTCATCTAGCAAAAGTGAGTGTGGAACTTCAAAGAAAAATGGTGTCTATGCTCTAAAGACTATTTAGCTACAGGAAATTGT--TTTATATT--TTTTTTCTTCTATACAAAATGCAGAC-----AAAATCTTGTGTCCTTTT--TGCTTACAAATAAA------------------ATATCAGGGTGAGGGTGAATCACCTTCTCTTTCCAAACCACTCCAATAAATTT-TGCCATCACTGGATCTTTATAAAATAAAATCTTTAAGGAATGGCTGACTGTCAAGCCTTAATAAGAACATAGACATCTGTGTCAGTACATGTAGCCTCCTAGACTCAGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATTTTCAATATTTGTGTTATTTATCCCACTATGGATAAAAGGAAAACCAAAATGTATTCAATGCCAATTCATTATTTTAGGCACTTTCTCTAAAAAACCGTTCCATGTCAAATATTATGTATACTCACTCCATAGACAAAACTT-TAGTCTTAAAGACTAAAA------TTTAACCCAAATAAGTACAA-------AGTAGAAATCTAAAGTCAGACCCTTGTCACTCAAAAGCTCAGTTGTCTTCTACATTATCACACTACTTGACATAGAACTCTAACACCCAGAGACCATACAATTAAT-------------TGCTTCCCCCTCCCCAAGCATCAGTTTATATTTCCCCTTTTAAAATACATTGATATATAATAAGTGAGTATGAAATatagatgatagatatagaagatagatagatttgtaggtatatagatagat---ggtagataatagaCACAGTCAAACACTTGGTAGAGttttataattttaaatattaaaatCTTCTTCATACCTCATTTACTGGTATCAC-----TCTTTCCTT----------------------------------------------------------------------------------------------------------------TTTGTCAAATGAGTTTTAATAAG--ACAGTTCAACCCATCTTCCTCAAATTCTCAAGATGAGATTTTTGTCAGATCTAATGTTGTTTGCTGTGTTGCTGAGCTGCATGGATATGTTAAGAACCAATCAACTAATAAA----CACAATCACATTTCATTCAAACTAATTTATGCCAAGTAACTTTTAAGAATGTATGACAACCTAAAATTATTTCTAATTGATGTAATTTCAGAGGATGGACAAAGGTTATGC------------------ACACATTCT-AGATTTGAATATTTGGGGATTAGGGAAATAATCAATAACCTTGATTTATAACAGCT------------TTACTGTTAGTTTCCTTCTGAATCCTTGCTTCATCCTTACTAATACATTCCTGACAAGTTTTGTCAGGCTTAGCTAGCCAAGCCTGAAAGAACAGGTGGTTGAGCTCCACCTATGTGTGACAGAGTATTC--ATTTCTACAG-TCTCCTTCGACTAGAAATCCAAGAATGTGGACTAGGCTGATCAGCAATCCCTCTCTGATTACTCTAATGACAGAATCCAGATGATCTGAATAATGTGGGTGTTGCTAATGTGGCATTAGGGTCATTCATTCACTCATCTATTCATTGGGAAGAAGTTAATAACAACTTAATTGACAGGCATCATCCTTGGTATTGATGTTACAAATATGAGAAAGATGCTG----TGTTGTCCTTTCAAAGTTAATGT-ATATCCAGGAGACCAAAATGTGATAAAACATCATATATGCATACTGAGATGAACTCTATAATAGCA----ATGCTAATGGAACTGAGTTTGCTGTAAGGTGATCAAAGCTAGTCCTGATTAAAGTGATGAAATTCTTTAAATCTCAAGAAAAAATGTAACA----TGTACAGCAGGTCTCTAGAAAT
s HiC_scaffold_1 138896861 2392 - 233722169 TGAGTGTAACCTATGTTGAGGACACTAATTCAATCAAAGATGAGTATGgaagctgtgggggaaa-atgaacaaaagaaattaaaagaagaaaacagaaagagataaagatacaGGCAATCCTAGATTtgattagaaattaa----------aaagagaaggcagtaTTCT-CTCTAATAACTATTTTG-CACAGTTAAAAAGCCCATAACTCAGAGTCCGAAACCTGTTTTAATCAATGTCTTATCTAATGCTTAGGGAACATGCTAAATGAAAATCAGTGACTCTCTGCTTAGAGTACACAGAGTTGCCAGTAGCAGTTCAAAGGGatgtgttttctattttgaagCAACCTAGCCTAAGCAAGTATGGAATTTTTAAGGGAA--TATGTCTGT-TTTTATAGAC-ATTTAGCTATACTAATTTGTATCTTGCATTGCTTTTTTCACATGTCCATTATGTATACTGATGAAAAGATTGTATTCATCTACTGCCTAGAAATAAATTGGAGTAATTGTTAAAAAGATGAAATGGAGGATAGTCCATTTAGTCTT--CAAATCATTTAGTTGTGTTTCTAGCTTCACCAACTTTCTCTAGAATTACAACTTGAATTGATGGCTAATTATCAGTCCTTAATTAGAACATAGCTATGAAGGTTAGTAGAGGAATTTTCTCAAAAAGAGGCTTTTAGGAAGGAAGAAACATAGAGAAACTCTGAAATATATGAGTTGGATGACACACCTTGGCTGGACGAATGAGATTTACGTAGTTCAAGAATTGATATACAAGTACAGACACATTACCCCAAGCTTACTCATTACTTCAAGCTTTGTCTACAGCTGAAAATCAGAAGATTTTCCATTTACTGGAAGTAGTTTTCTGTAACTGCACTtgatacaaaatattcaaaatcggTGTTACTTATTCCATGGcggat-----taaaattaaaacatattgaaTGCCTATTCACTGTTTCAGCCACTTTCTCTAAAGGC--------TATCAAAAGTTAG----CCTTACTTCATGGACAAAATGCATGGTAAGAGAGGTTAAAAAATGTATTCAACTCACACAGCTGTAAGCAGAAAAGTGGCAATTTAAGGTCATACCCGATTTACCCAAAGGCCCAAgtatattatatttcatta---tggTCAACATAGAACTCTAACACTCAGAAAGTATACGTCAAATGttggtttctctttccttctttcctctaagaaatcagtttatttttcttcctttaaaaccaatgggtg---gatggatggct------------TGGTGGATG-----GATCGATGGATTAATGGATAAGTggagagataaagagagaaaatagatttaa-----------gtagcttttaatttttttaa-tgttaaaatcttCTCCATACCTCTCCTTTT--TATCATAGAGACCTTTTTTTGTGGCCATAGCATTTCTATATCACTTAGTAAAGGAGGTTACAATAGGACTCAGAGACTCTGATACCAACTAGGGCAGACAGTGGTAAACTGAGAGAGGGCAGTTGGGTAGAATCTGTCATA-GAGTTTTAATgaatcatatttttatctttcatccCTAAGTATTCAAGATGAAAATTT-GTCAGCTCCACT-TTGTTTGTTAAATTGCTGGGCTGACTAAATGTCTTAAAaaacaatcaaccaataaatgtaCAAAATCACCTTTCATCTGAACTAATTTACTCCACATAGCATTTTA-ATTGTACCAGAACCTTCAACTATTTCCAACTATTACAATTTCAGAAGCTGGATAAAGATCATGCTGCTTCCCAAAGTATACCACATAAGCTCAGATTTCAAAGTTTAGGGATAAGGGAATTCCT-AATAGCCTTTACTTTCCAATGTTACTAATtaattcttactacttttttctctc-aaatccTTGCTTCATTCTTCCTAACACTTTTCTGACAAGTATTGTCAGGCTTAGCCAGCTAAGCTT--AGAAACAA--GGTTGAGCTCCACCTATGTGTGACAAAACACTCTTATTTCTACAACTGTCCTTTGTCAGGAAATGCAGGAATGTAGGCTATGTTGATCAGCAATC-----CTGATTAGTTTGATGATGGAATCCAGACAATCTAGATACTGTGGGTGTTTGCAATGCAACACTAAGGT-ATTCATTCACTGATCTATTCACTGG--AGCAAACAATAACAACTTAATTGACAGACACACTACTTGACACTGAAGTTACAAATATGAGAAAGACACTGCCCCTGTTTT--TTTCAGAGTTAACTTGACCAGTAGGACactaaaatatgagaaaacaatagaCATGAACCGTGGCAAGTACCATAAAATA-CACTGTATGACAAAGGAACTATGTTTGCAGTGAAATGTTTGAC-TTGATTCAAAGTAAAGAAGTAAGATTAAATAGCtttcaagaaaaaacacaaaggaatttTTCAGTGTGTCTTCAGTAAT

a score=43064
s chr3            93265562 2415 + 160039680 aacaaaacaaaacaaaacaaaaca----aaacaaaacaaaacaaaacaaaacaaaaAAACAACCCAAGACCTGAGAGTTCTAAACTGGCACAATGATCTTCCATCTACCCTATGAGTTGGTACCAAAATTGATTTGACCCAGCTAT--GTTAGAAATTGTCCCAAGTTATCTAGATATCCTAAAATAAGACAAATCCCTTGAAACAAACATTCTTAGAAACTGGGAAAGTCACACTTAATAGGGATGCTGCTAACAAAG-----------------CACATTGGTGTAA--TGTGTCCACCTACACATCAACAATTTTACCATTGATGTCATAATCTATGAGGTCAACAAAAACA-AATCATCAGATTAGCCAAGTCACAAAGTCAATCACTCTAG----TCGTGTCCTTCAGTCT----------CAGTGGCTTTTCTATATACCTGGTAATTTAGAGTCCTGA-TGTTTTCAACTTTTGCTATAATCAGAAATTACATATAATATACCCGGATAACTCAAGACTTATTCTGATGTTCACCTCCTGACCTCATCAAGTTCCCAGACTATTAAACTACGCAACCCTTCTGGACAACAGCTAAGCCATGCACACTATTCTGGTCCCTGCTCTGACTACA--TCTGGGTGAGAGGGGTGTGGTGTAACCAAAGGCTGAAGCTG-GCTACACCAATAATCATGGAGATTATCAATCAAACATCTGCCTATTCTACAACATGTAGGTGGTGAAATGTGATGTATGAGTAACCAAGAGACGAACAAAGGGAAAATAAAGTCTATGTTGACAGAAAGTAAGTGCTAAGTAGATACATACACAATCTACAGCACTACAAG-TTTATTGAGG-CACCTATCACTCAG---AAGTAGTGGCCTTACATAGGAAGAGGTTAAAGACAGAAGTTACCTGAAATTCAGGAGCAAGCATCAGGTTTCCTATGCTACCATGCTGTCCTTGATC---CCTTGCACTCACGATAACACACTTACCATCTGATTCCTTGTCTTTATGATAGAAACTCTTCTTTGTTCTTCAAAA--GCCTGTATCTAAGATTAAAATTCTGATGT----GATGAGCCCTAATGTCCTTCTAGCGATTGATGGAATGTCTTTGATATCAACTCCCAAATACTTGCTTATCTAAACCTCTTAT---------TCGACCTCTGAATTCTGACACTATTAGGCTG-TCCTCACTAAATTGCCTAACA-CAGCTGTTTGGCAGGGTTTAACTAACCGATTGCTTCTTATTCTTTACTCTGCTTCATGATCCACACCCAGTGCCTCAGTAAGGATGCTTCAAGAAACACCTCT-TTCTTCAG-------TTCCATTGCCTTACTTAAAGACTTTTTTTTAAATCTCTTTTCTTTTATTT--AAATAACCTATGATCAACTTAATCTTCCACTCATATGCCTAAAAGTCATTTTTACTGAA-AATATCTGATCTTCTTAAAATTCTACTTTGAAAAGTCTTCCATTGCTACCTAATATAAATAAGCAACTATCCACATCAAATAACATGCACATGCCTTGACCTGGCTTTCAGGACTTTCTTTATATGGCCTTTTGGGCTAAACACCCCTGCTCTTTTCCAtattttatttttagatatgtggatgttttacccgcttctatgtctctataatgcatatgtgcctggtatttgctgcagccagagagggtgtcaaatcccctggaactagagttaccaacgattgtgggtgtcatgtgagtgctgagactagaacctggtcccctgtaagagctatcagtgctcttagccacacagacgtctctccagcttcCCATAAACGAATCCTCTTAACCTCAGATTGCACATCAACTCCTCTTGACCTCTAAACAGTGAGTTGACTTCTCATCTCTTCTGTTCATCTACAGATACCTTTATTATCA-------CACActgcttacatgtctgccttcctcattcaattatgaactctttgaggacagagaacatgccttacttatttatagtcctgtgacacacatggtgatggacaagttgtc----------acgtgtttgttgaatgagtgcatTGTCCCTGAATATTGTGACTTATCTCCATCTGACTTTCCCTTAGTACCCTGCAGAGGCTTCCCACTCAAAAATATATTCTTACATATCTGTCTATGTACTATCTCTCTCCTGCTTTCTATCTATACTACCAGAATATCTTGAAGGGAAAGGCAAAAGGAGAGTGGGAGCACTATTTCCATTCCA--CCTCCTTGATCTTCCACATTCTCCTGTGATTGGTAAACTATGCTAGACCCTGTTTGGACAGATTAACATTTTTAAAGTCTG-----AAACATCTCTATAACACCTTCATCTTGGC-------TGAATTATTTTATTCAATATTCTAATGCTTCATGA--CTGTCACTAATCCTCACTGTTTGCTTCTGTAAGACATGGAATGCCT-AGTGGTCTGTTCTTCACTGATGATGACGTTCTTTGCTGA
s HiC_scaffold_1 138935008 2107 - 233722169 aacataaaatattaaaaaaaaacctctcaattaaagctgaaaaaagtaaaagacaaaaagaa---aggacCTGAATACTTTG---TAACACATTGGTTTG--ATCCACACTGTGGGGTACCTCCAGAAGTTGTTTGATCCAGCCCTTGATTGGGTACTCTCC-AAGTTGTTCATATATCCTAAAATAATATAATCCCTTTGAAACAAATGCTTTAAGAAACAGAGAA--CTGCATTT--TAGGAA--ATGCCAATAAAGACAAGTAGAAATGTCTACAAGTGGAAGTAGACTAAGTCTGCCTATACTTCAACAAGATCACCGCTGGTGGTATA-----TAAAGTTAACTAAAAGAGAATTATTAGTCTCATAAAGTTACAC-TTTGAGGACTTTGGAGCTTTGGGCCTTTGAATATATGATACTTATAGTTATTCCTTTGAATATATGATACTTTAGAGTcatgaatttttttaactttt-ccatgAGCAGAAGTTGCA---AATATGCCAGTATAACTCTATAGTGGTT-TGACGTGTACCTTCTGAATTCATCCAGTTCCTAGGCTATTACACTGTGCAACTCTCTAGCCCTGCAGCTGAGCCACATACATTATTCTGGTCCCT-CCCTGACTACACCTCTAGGTGAGAGGGGTGTGGTACAATCAAAGTCTGGTGCTGAGCTACATCAATAATCATGAAAATTATCAATCAAACATCTGTCAAATCTACAAGGTGTGGGTGGAGAATTGTGATAGATGAGAAAC----AGACATACAGAGG---AACAAAGTCCAAGTTGACAAAAATTAACTGCTGAATAGATAGAAAGGACATC--AGGTATTAGAAGTTTTAGTGAGGTTCCCCATCCATCAAGACAAATACTGACCTTCGGTA-------TTGAAAGACA-CAGTTACTT--AACTCAGTAATAAACATGAAATCACCTATGC-----TGCTGATCTGGATTGAACCTTCAGTTC----TAACAAGGTCTCTAAGTGACTC---------ATGATAGAAACTCTTCTGTTCCCCTCAGTCTTTCCTATGGCCCAAATTAAAATCCTGTCGTGAAAGATGAGTCTTGAACTGCTGATA-TGATTGATGTGAAATTGTTGACACCTATTCTCCAGCACTTGCCCATCTAAACCTCCTGTTTTCAGCCCTCCATCACTGAA--CTGACTTTATTGAATTGCTCCTCCCTAATCTGCCCAATACCAGGGGCTTGATGGGGCT---CTAAT--ATTGCTCTTCATCCTC----------------------------CCTCAGTAA-TCTGCTTCTGGAAATGCCTCTACCCTTCAGTACCAATTACCAATGCCTTAGTTTGAGG------TATCAATaccatttc-tttatttaaaaattgtctgTATCCAACTCAATATACCACCCATACTCCTAGTAGTTATTCTCACTTAATAAAAACCCACTCCtgcaattttctaattttaaaa-cctCCAGTTACTACCcaatataa----------------agtatataatattCACATTGTTTGGCCTG---TTGAGGCCTTTC--TATATGGACTTTCAGGTCCATTTCCTTTGTTCTTCAC------GTGTCTTTTAATa--------------------------------aatgcat----------tattta--------------------------------------------------------------------------------------------------------------------------------------------------------attttaatttcaaat-----attacCTCCTCATTGCT------------------------TGTCTTACATTAATTTGCAGACATCTTTATTATAGCACATATCACACTGTTTACATGTCTACTTTCCTCATTAGATTATGAACTCTCTGAGGACAAGGAGCATACCTTCTTCATTTACACCCCTACAATAAGCATAGTGATTGGAAAGCAGTCAGCtagcaataaatgtttgttgaatgaaagaatgatCCCTAAATACTGTGACTTGTCTTTA---------------------AGCTGAATTATCTCCCTCCAGAATATATtctt--gtatctattta--------------cctatcatCTACCTGTAATATCCCAATAC------------------ATAAGAGTAAAAGCAT--TTTATGTTCTAGTCTCTTTTGATGTCACACATTGTCCTGTAACTACCAATATATGTTAGATCCTATCAGAAAACA-TAACATTGGCAGAGACTTTGGTCATAAATGACTTTATTGGCTCTGTCTTGGCTTGATCTTGGAttctattttccaattttctgatGCTGCATCACTCTGTCACCAGT-CTCACTAT----TTTTATGGACCATGAATGGTCTGAATGGTCCATCTTTTATTGCTGATGCTGGATACTGCTGA

a score=105653
s chr3            93269381 4819 + 160039680 [encoded data, 5446 characters]
s HiC_scaffold_1 138937801 5033 - 233722169 [encoded data, 5446 characters]

a score=4976
s chr3            93269667 212 + 160039680 ACAAATACCAACTCCCCTTCACTCCTACAGCCTCAGTCACACATCTCAAAGGGCTGATCCCTTG---AATTGTGACAACCTGACCCACTTCAGCACCCCAGAGGCCATATGGCAACATATGTCTTTCC--------AGCCTACTGGATAG-----GGAAAGGGA-------GGGACAATCAATTGAATGATTGTGA---TTGAAATCCTGTAATTTATGATTTGTCAATAACTCTTGC
s HiC_scaffold_1 138962922 237 - 233722169 ACAAATTCCACCTCCCCTTCACTCCCACAGTCTCAGTCACACCTTTAAAAAGGTCATTGCTCTGATTAAGCATGGCAACCTGGCCCTAATCAGGCATCCTAAGGAAATACAACTACACAATGCATACCGATCCCATAGCACTCTGCATagttcacagaaaaataaataaataaaacactcaaCTTAATGATGGTTGAATTTGGAGTCACGTAA-TTACCACTTGCCAATAGTTGCTAC

a score=13472
s chr3            93277334 724 + 160039680 TGTATTTAAAACCATAAAACAGGCAGTGTCAGTTGCAAAAGTCACTTGATGTTTTATACTATAGACATTGGAGAAGTTGTTCTTTAACAAGT----TTCATTTCTAAAATGTGCTCTTTAAAAAAATACTATGAGTTTAAACTATAAAGAGGCATTGCAATGATGAATACAAACT---ATAAAACAAAAGTAAAAAGGAAATGAATTTTGTTTCCCTTTTACAGGTGCATACACACTAC-----TAAAAGATGTCCGCTCTCCTGGAAAGCATCACTAGCATGATTGAAATATTCCAACAATACTCAACCAGTGATAAGGAGGAAGAAACACTGAGCAAAGAAGAGCTGAAGGAACTTCTGGAAGGACAACTACAGGCAGTCTTGAAGGTGAGAAATGTATAAGAGAACTGATGAGACAAAG-ATTTCAGTGCCTTACTAATAATCTACCCAAAGATTGTATAAAAATGTTTT--AAGTACTTCATTAGTAAAAGAAATAGCCATGATTAAGACTGGATAAAATGTATT------TAGCTTTCTTTAAATGTGTACCTACATGTTCTT----------------CTTACATGAGAT-AGCATATTTGAAACTAAAAAACTATCAA-TATTTAATTTTAAAATAAGAGAAATGAATACTACCAACCAGAATTATCACAGTTTTCCCCAAAATCAAGATTAGTAGA--GTATACTTTGAAAACAAATGAA-------TCATGAAAAGAATAAAATTCTGACACATGAAATAAAA
s HiC_scaffold_1 138946410 718 - 233722169 TGAGTTTAAGACCCAGAAATGACCAATGCCAG----GAAATCTGTCAGCTGTCTGTAACTGTATGTACTGAAGACAGACATTTTTAATGGgtggttttcattttgaaagacagaCAATTTAACGAAGGCTATAGGATtaaaatgttgaaactcagttTAAT----AATACAAACTCAAACAATAAAAGAGTATAAAGCAaa---gttttactttctctttctaaGTTTACATAAACTGCACCTCCTAAAAATGTCTACACTCCTGGAAAACATCATTACTATCATTGACCTTTTCCAACaatattcaaaacaagatgaggaGACTGACACACTGAGCAAAAAAGAGCTGAAGGAACTTCTGGAAAAGGAGTTTCGGCCAATCCTGAAGGTAAGCACTAAATGAGGgg--tgaaaaaataaagtaattctgTTCATTACCAATAACCTAACCAAAGCTAATTCTGAAAAGTTTTCCAACAGTTTCATCTG-AAACAAAACAGCCatatttcaga---aattatttttatttcattgtagcTTTATTATGATACCTA--TACCTATgcctataaaaatacagaaaacttacgtgaaagaaaaatacttagaaatataaGACGGACAATTATTTAGCTCT--------------------------------CTATAATAGTTTTCCCC-TTATCAAGAATGTTACATGGTATACTTACAAAATGTATAAAGTTTGCCTTATACAAAATAAAGACTTCTGATAAA--AGGtaaaa

a score=5981
s chr3            93277500 234 + 160039680 AAACTATAAAACAAAAGTAAAAAGGAAATGAATTTTG---TTTCCCTTTTACAGGTGCATACACACT-ACTAAAAGATGTCCGCTCTCCTGGAAAGCATCACTAGCATGATTGAAATATTCCAACAATACTCAACCAGTGATAAGGAGGAAGAAACACTGAGCAAAGAAGAGCTGAAGGAACTTCTGGAAGGACAACTACAGGCAGTCTTGAAGGTGAGAAATGTATAAGAGAACTGA
s HiC_scaffold_1 138965601 238 - 233722169 agacactacaataataagaaataagaggtatatttctcccttcccctcttttAGGTTAACTTAAATTTGCAAAAAGATGCCTAAACTCCTGCAAGGCATTGTCACTGTCATTGATGTTTTCTACCAATATGCTACCCAGCATGGGGAGTGTGACAAGTTGAACAAGGAAGAGCTAAAAGAACTTTTGGAAAATGAATTTCACGAAGTTCTAAAGGTAATAACTTCATGTTATGACTGA

a score=5610
s chr3            93277533 201 + 160039680 TTTGTTTCCCTT-TTACAGGTGCATACACACTACTAAAAGATGTCCGCTCTCCTGGAAAGCATCACTAGCATGATTGAAATATTCCAACAATACTCAACCAGTGATAAGGAGGAAGAA------ACACTGAGCAAAGAAGAGCTGAAGGAACTTCTGGAAGGACAACTACAGGCAGTCTTGAAGGTGAGAAATGTATAAGAGAACTGA
s HiC_scaffold_1 138884640 201 - 233722169 tctgtctctcttactAGAGTCACTTAAAC-TTGCAAAAAGATGACAGATCTCTTAAGAAGTCTTGTCACCATCATTGATATTTTCTACAAATACAC------TGAGCAAGATGGAGAATGTGGCACATTGAGCAAGGATGAGCTAAAGGAACTTCTAGAGAAAGAATTTCATCCAATTCTAAAGGTAAGGACCATGTGCTAGGACTGA

a score=5024
s chr3            93277567 150 + 160039680 AAAAGATGTCCGCTCTCCTGGAAAGCATCACTAGCATGATTGAAATATTCCAACAATACTCAACCAGTGATAAGGAGGAAGAAACACTGAGCAAAGAAGAGCTGAAGGAACTTCTGGAAGGACAACTACAGGCAGTCTTGAAGGTGAGAA
s HiC_scaffold_1 139082752 150 - 233722169 aaaaaatgtctcCACTTCTTAGAAGCATCATTGATATCACTGAAATTTTCAATCAATATGCCTCATATGATTGTGATGGAGCAGCATTAAGCAAGAAAGACCTAAAGAACCTCCTTGAAAGGGAATTTGGAACTGTCCTCCAGgtaagaa

a score=53936
s chr3            93278055 1108 + 160039680 AAAAAGAAGAGTAG---CTTGCCAGGCGTCCTCGTTGGAGTGACATCGTCTTTAAACCCCGGGTGGCAATCCCTGATGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTCAAGATCATCCAACTTTTGGATGATTACCCAAAATGCTTCATTGTGGGAGCAGACAACGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTCCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAAAACCATGATGCGCAAGGCCATCAGGGGCCACTTGGAGAACAACCCAGCTCTGGAGAAACTGCTGCCTCACATCCGGGGGAACGTGGGCTTCGTGTTCACCAAGGAGGACCTCACTGAGATTCGGGCTATGCTGTTGGCCAATAAGGTGCCAGCTGCTGCTCGGGTTGGTGCCATCGCCCCATGTGAGGTCACTATGCCAGCTCAGAACACTGGTCTGGGGCCCGAGAAGATCTCTTTCTTCCAGGCTTTGGGCATCACCACGAGAATCTCCAGAGGCACCATTGAAATTCTGAGTGAT-GTGCAGCTGATAAAGACTGGAGACAAGGTGGGAGTCAGCGAAGCCACACTGCTGAACATGCTAAACATCTCCCCCTCCTCCTTCGGGCTGATCATCCAGCAGGTGTTTGACAATGGCAGCATTTATAACCCGGAAG----TGCTCGACATCACAGAGCAGGCCCTGCACTCTCGCTTCCTGGAGGGTGTCCACAACGTGGCCAGTGTGTGTCTGCAGATTGGGTACCTGACTGTTGACTCGGTGCTGCACTCCTTCATCAATGGGTACAAGCGCGTCCTGGCTTTGTCTGTGGAGACTGAGTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCCTGGCTAATCCATCTGCATTTGCG--------------ACTGCTGCCATCACTGCTGCCCCTGCGGCTGCTA-CAGCACCTGCCAAACCTGAAGCAAAGGAAGAGTCTAAGGAATCAGATGAGAATATGGGATTCTGTCTCTTCAAAGAATAATCCCCTCAAAGCAACCAAGTCAGCCTGCTTAATTTGAGAAAGATGGAAATGAAGGCTTATTTCTCTTTAAAAAAAAAAAAA
s HiC_scaffold_1 200324417 1083 - 233722169 aaaaagctcagtaGGCTTTTTCCAGGCATCCCAGT--GAGTGACATCATCTTCAAACCTTTCGTGGCAATCTCTGACGCACCAC-ATGATGACCAGGGAAGACCAGGTGACCTGGAAATCCAAGTCCTTTCTTCAGATCAC-----------------ATCCAAAAATGCTGATTGTGGGAGCCGATAGTGTGGGCTCCAGACAGA-GCAGCCGATCCACGTGTCCCTGCAAGGGA-GGCTGTGGTGCTGACGGGCAAGGACACCGTGATGCACAGGGCCACCCGAGGGCATTTGGAGAGCAGCCCAGCTCTGGGGAAGCTGTTGCATCATATCCAGGAGAAGATGGGCTCTGTGTTCACCAAGGAGGCCCTCCCTGAGATTGGGGATACACTGCAGGCCAACAAGGTACCAGCTGCTACCTGTGCTGGTGCCATTGCACCATGCAAAGTCACCGTGCCACCCCA-AATACTGGTCCGGGGCCTGAGAGGACCTC---CTTCCTGGCTCTGGGTATCACCACCAAAATCT-CAGGGGCACCATTGAAATCCTGAATGATAACACAGCTGATTAAGACTAGAGACAAAGTGGGAGCCAGCAAGACCACCCTCCTGGACATAATGAATATCTCCCCTTTGTCCTTTGGCCTGGTCATTCAGCAGGTGTTTGACAGCTGCA--------AACCCTGAAGTGCTTGCTTGACACTGCAGAGGAAA--CTGCTTTCTCGCTT-CTGGAGGGTGTCTGCAATGTGGCTACTGTTTGT----AGA-TAGTTACACAACTGTCACATCAGTGCCCCCTTCTATCATCAAAGAGTACAAGCGGGTCCTGGCTTTGTCTGTGGAGACTGATCATACTTTCCCACTTGCTGAAAAGATCAAGGCCTTCCTGGCTGATCCATCAGCATTTGTGGCTACTGCCGCGTCACTGCAGCCACCACTGCTGCTCCTGCCTCTGCAGCCACCCCCAGTCAAGGTTAAAAC-AAGGAAGAGTCAGAGGACTCAGATGAGGATATGGGATTTGGTCTCC---ATGAGTGATCACCAAAAGGCAAAGCACTCAGCCTGCCTGATTGGCAAAGCAAGGAGA-AAAGGCATAAttctgtgagagagagagagaa

a score=59911
s chr3            93278069 1208 + 160039680 CTTGCCAGGCGTCCTCGTTGGAGTGACATCGTCTTTAAACCCCGGGTGGCAATCCCTGATGCACCGCCGTGATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTCAAGATCATCCAACTTTTGGATGATTACCCAAAATGCTTCATTGTGGGAGCAGACAACGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCCCTCCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAAAACCATGATGCGCAAGGCCATCAGGGGCCACTTGGAGAACAACCCAGCTCTGGAGAAACTGCTGCCTCACATCCGGGGGAACGTGGGCTTCGTGTTCACCAAGGAGGACCTCACTGAGATTCGGGCTATGCTGTTGGCCAATAAGGTGCCAGCTGCTGCTCGGGTTGGTGCCATCGCCCCATGTGAGGTCACTATGCCAGCTCAGAACACTGGTCTGGGGCCCGAGAAGATCTCTTTCTTCCAGGCTTTGGGCATCACCACGAGAATCTCCAGAGGCACCATTGAAATTCTGAGTGATGTGCAGCTGATAAAGACTGGAGACAAGGTGGGAGTCAGCGAAGCCACACTGCTGAACATGCTAAACATCTCCCCCTCCTCCTTCGGGCTGATCATCCAGCAGGTGTTTGACAATGGCAGCATTTATAACCCGGAAGTGCTCGACATCACAGAGCAGGCCCTGCACTCTCGCTTCCTGGAGGGTGTCCACAACGTGGCCAGTGTGTGTCTGCAGATTGGGTACCTGACTGTTGACTCGGTGCTGCACTCCTTCATCAATGGGTACAAGCGCGTCCTGGCTTTGTCTGTGGAGACTGAGTACACCTTCCCACTTGCTGAAAAGGTCAAGGCCTTCCTGGCTAATCCATCTGCAT--------------TTGCGACTGCTGCCATCACTGCTGCCCCTGCGGCTGCTACAGCACCTGCCAAACCTGAAGCAAAGGAAGAGTCTAAGGAATCAGATGAGAATATGGGATTCTGTCTCTTCAAAGAATAATCCCCTCAAAGCAACCAAGTCAGCCTGCTTAATTT---------------------------GAGAAAGATGGAAATGAAGGCTTATTTCTCTTTAAAAAAAAAAAAAG----------TAACTGACTTAGTA----------AAAAGTGATGT------TTAATAG---CTGAT----ATTTAAACATTAATTCAGATACTATTAACACTAACAGAC--AAGAAGGGAAAAGCATAAAAATATTACAAAA----AAAAAA
s HiC_scaffold_1 131054536 1263 - 233722169 CTTTCCAGGCATTCTTGCCAGAGTGACATCACCTTTAAACCCTTTGTGGCAACCCC-GAGGTATTGCTATGATGCCCAAGGAAGACAAGGTGACCTGAAAATCCAACTACTTCCTTAAGACCATCCAGCTTTTAGATGATTACCCAGCATGCTTCATTGTGGGAGCAGACAACATGGGCTCCAAGAAGAGGCAACAGATCTGCATGTCCCTTTG-----------TGGTGCTGATGGGCAAGAATACCATGATGTGCATGGCCATCCAAGGGCATCTGGAAAACAACCCAGCTCTAGAGAAATTGTTGCCTCATATCCAGGGGAATGTGGGCTTCATGCTCCCCAAGAAGGACCTGATTGAGATGAGGGATATGCTGCTGGCCAACGAGGTGCCAGCTGTGGCCCATGCTGGTGCCACTGTACCATGTGAAGTCATTACGCTAGCCCAAAAAACTGGCCTGGGTCCTGAGAAGACCTCCTTCTTTCAGGTTTTAGGCATCACCACTAAAATCTTGAGGGGCACCATTGAAATACTGAGTGATGTACCGCTGATTAAGACTAGAGACAAAATGGGAGCCAGCAAGGCTGCCCTCCTGAATATATTGAACATCTCCTCATTCTCCTCTAGGCTGATCAGTTATCAAGTGTTCAACAGTGGCAGCATCGGCAACCCTGAAGTGCTTGCCATT-CAGAGGAAATCT--CATTCTTGCTTTCTGGCAGGAGTCTGCAATGTTACCA----GTGTTTGCAGATTGGTTACCCTACTGTTGCATCGGTGCTCCATTTTATCATCAGTGGGTACCAGCAGGTCCTAGCTTTGTCTGTGGAGATGGATCCCACCTGCCCACTTGCTGAAAATGTCAAGGCCTTCTTGACTGATCCATCAGCATGGTGGCTGCTCTCCCTGTCACTACTGCCACCACCGCTGTCCTGCTGGCTGCAGCCACCCCAGCCAAGGCTGAAGCTAGGGGAGAAATGGAGGAGCCAGCTG---ATATGGGATTTGGTCTCTCT---GAATGTTCACCCAAAACCAAACTATTCAGCCTGTAtgcttgacaaaaaaaaaaaaaaaaaaagaaagaaagaagaaaagaaataaaggcataattttcttcagaaaaaaaagaagaaaaagaaaatagcagacATGATATAAGTGCTTGAAAAAAGAGGTAGTATATTAAAAGGAActgatggaaataaaaatgttatatttattactttttaatttaaaaaatcaaaacagaaaaaagggtagaaatgacacagaatttcaaaaaa

a score=5386
s chr3            93279353 251 + 160039680 AAAAATACCTTT----CTTAACTTCTTACAGAATCCAGATGACCAAGACATCGCTGAAGTCTTCATGCAAATGCTAGATGTGGACCACGATGACAAACTAGATTTCGCTGAGTATTTACTACTGGTGCTAAAGCTGGCAAAAGCATATTATGAGGCATCCAAGAATGAAAGTTTCCAAACACATGGATCAAATGGGAGAAGTAAAACTGATTATAAAGGACTAGAAGAGGAG---------GGAGAGGAAGGAAACAAACAGAA
s HiC_scaffold_1 138967349 261 - 233722169 AGAACTGCCTTTGTATCTTATTCCTACACAGAACCCAGATGATCCAGATACTGTAGATATCATCCTGCAAAATCTGGATAGAGACCACAATGAACAAGTGGATTTTACTGAGTATCTTCTGATGGTATTCAAGTTGTCTCGGGCTTGTAATAAAATTGTTGGCAAAGACTACTGCCAAGCTTCAGGGTCAACACACAAAGATCA---TAGTCATAAGCACCAAGAGGAACAGAGTGacacagaagaggaaggaaaaggccAAAA

a score=9526
s chr3            93279372 599 + 160039680 TCTTACAGAATCCAGATGACCAAGACATCGCTGAAGTCTTCATGCAAATGCTAGATGTGGACCACGATGACAAACTAGATTTCGCTGAGTATTTACTACTGGTGCTAAAGCTGGCAAAAGCATATTATGAGGCATCCAAGAATGAAAGTTTCCAAACACATGGATCAAATGGGAGAAGTAAAACTGATTATAAAGGACTAGAAGAGGAGGGAGAGGA-----------AGGAAACAAACAGAAT--CTTAGACGGAGGCATGGTGGAACTGATGGAAAGAGAAAAAGTGACAGAACGAGAAGCCCAAATGGAAAAAGAGGTAAAAGGCAAGAATCAAGATGTAGAAGTGAGGGAAAAGATAA------------------ACATAGGAGAGAACCA----GAAAAACACAGACACCAACAAGATTCAAAAAGAAAGCAAAGGCATGGATCTGGTTCCACCGAAAGAAAGGACAACAGAAATAAGAAAAACAGACAGTCA-----------AAAGAAAGAAACTATGATGAAATCTATGACAATGGAAAATACAATGAAGACT-----GGGAGGCAAGCTACAACAACTGTTACTACAAAACACAGAATACTACATTAGATCAAAGAGAGGGAAACAGAAGACCCAGAGCA
s HiC_scaffold_1 138947343 609 - 233722169 TTTCACAGAATCCAGATGATCCAGACACTACAGAAGTTTTTATGCATATACTAGACATAGACCACAATGAAAAAATAGACTTCACAGAGTTCTTGCTGATGGTATTCAAGCTGGCTCAAGCATATTACCAGTCTGCTGGGAGTAAACATT------CACATGtacaaaagcacaaaaagaatGTTCATGATGAGGAAGATGAAGATGATGAGATAGATGACACAgtacaagaaaaaaggaaaataccttATAATGCTTCAAGAC-AAAGTGGtaggaaacaaaacagacaaagatCCAACAGTCCGAAAGGCAATGGAAAATACAAGCATAGGTCAAGCTCTGGAA---AAcgaacaaataaaaggaaatcaaccagtccacaaaagacaaaacaatgtgGAAAAACCTA-----CAAGaacatacaagaaaaacaaaaaagca--gacctAATT-CACTGGGAAA----ACAACAAAGGTACAAAAAAACTACAATTGTCTCAGAAAGCAGAGATAAATACACAGGTGATAT---TGgctatgaagaa---aatgaaaactttgcaAAAAGGGAAACACCAAGCAATGGTGGCAC----------ATACCAGAT---ATCAGAAGGTGAGAAATATAGTGTACAGAACA

a score=5849
s chr3            93279376 346 + 160039680 ACAGAATCCAGATGACCAAGACATCGCTGAAGTCTTCATGCAAATGCTAGATGTGGACCACGATGACAAACTAGATTTCGCTGAGTATTTACTACTGGTGCTAAAGCTGGCAAAAGCATATTATGAGGCATCCAAGAATGAAAGTTTCCAAACACATGGATCAAATGGGAGAAGTAAAACTGATTATAAAGGACTAGAAGAGGAGGGAGAGGAAGGAAACAAACAGAATCTTAGACGGAGGCATGGTGGAA-------CTGATGGAAAGAGAAAAAGTGAC--------AGAACGAGAAGCCCAAATGGAAAAAGAGGTAAAAGGCAAGAATCAAGATGTAGAAG---TGAGGGAAAAGATAAA
s HiC_scaffold_1 138885967 361 - 233722169 ACAGAACCCAGATGATCCAGAAACAGTGGATGTCATTATGCAAATGCTGGATCGAGATCATGACCAAAGACTAGACTTAATTGAATTTCTTCCAATGGTATTCAAGCTAGTTATGGCCTGCAACAATGTTCTCAGCAAAGAATACTGCAAAGCTTCAGAGTCAAA---AAAGCGTAAGCATGGTCATCAGcaagaagaagaaagtgaaacagaagaggaagaagagacacCAAGACAGAAATCAGGTTATAGACGTTCCAGTTGGCAAGAGGGAGAGGAACATGGTTATAGTTCTGGGGGCTCCAGGGGAACTGCAAAACATAGACATGGGTCAAACTGCAGGAGACTGGAAAGACAAGGTGAA

a score=21160
s chr3           93304972 522 + 160039680 AAAAAGACTAAAAGGATATGAGC-ATGCATCCTGGGTCACAGAAGCCATGATTGTTTGTGTCCTTTCTACCCGTGTCTGACTGCTGC----AGTCTTTGCACCTCTGCCCCAGCTTCCCACACTGACTTTGGCCCTGATGCTCAGCACCACTCTGACCCTGGGGGAAACCAGAGGAGGCTGGGATGCTGCAGCTGGCCTTGG------TACTCCTGTAGGTACCTGGAAGGATCACATA-TTTGTACTGGCAGTAC------------CCTCTAAAATTAGAGAGAATTGAGGACCAAGTGCTGTACGTCTTAAAACTTGATGACAAGATTGGCCCAGAAAAACCTTCAGTAAATTTTCCTTCTCATGAAGGACATAGGCTTGAACAATTTGAACCAAGTAGAGATTATTATGGCCATGGAAGATGAATTTGTA----TTTGAAATTCCTGATAACGATGCAGAGAAGTTAATGTGTCCACAAGAAACTCTAGATTATGTTACAGGTAAGAAGGATGTATATGAATAAAGTATCAAAGCTTTCTTCCTCA
s HiC_scaffold_1 53876745 541 - 233722169 aaaaaaaaaaaaaaaccctaggcTGTGCATCCTGGGTCGGCGTAGCCATGGTGGCTCATGTCCTTTCCACTTGTGTCTGCCACCTGTCCTTGGCCTTTGCATGGCCGCCCTGAGTCCCCACACC-----TGGCTTAGATACTCAGCACCACTTTGTGTCCCACCAGGACCAACAGAGGCTCGG-TAATgcagctggcctcagcctccgTACTCACACAGGTTCCAGGGAGGATTCTACAAGTTGTGCTGCCTATATAGAGACACACCTCCTTTGACAGAGAAAGGAATCAAGGATAGGGTTCTGCATGTCTTGAAACTTTGTAACAAGATTGACCCAGAAAAGCTCTCAGTAAATTCCCATTTT-ATGAAAGACCTTGGCTTAGACAGTTTGGACCAAATTGAGATTGTCATGGCCATGGGGGATGAATTTGGAAGAATTTGAAATTCCTGATATAGATGCGGAAAAGTTTCTGTGTCCACAAGAAACTGTAGATTACACTGCAGATAAGAAGGATG-ATATGAATAAACTATCACA-CTCCTTTCCTCA

a score=5247
s chr3            93311855 403 + 160039680 TCAAGGCTAGACATAAACTCATGGATAGTTTGGATTTAGTC---------------------------ACACAGAACCAT----GAACACTCCGAAG------ATAACTACAGATGCTTAGAGACA----------AGTT-----CAACAGCTGTCTGGAGCCT-----GTGCAAAGAGACCAAAACCCTAAGAG-----------AATACAAAGAGAATT-----------ATTAACATC---CCATGacaaacaaacaaacaaacaaaAAAGTACATG-TTGAGTCTATGATAAACAAGATAAGGGCCTATCCATTGTTTTTTTTTTTTAAAGTAAAAAATTGGGGTCTAGCACACAGTATAAGCAGAAAGCAGATACCAAGTCAGATTCATTTTAGTGTTAGTAAAGGGCACTCGGGAAAATGAAATGGGCTGTCAGCTTTTGTGCATAGTCACTTTGAGTGAGGTTATAAACAGTCATGGTT
s HiC_scaffold_1 138957774 469 - 233722169 TCATGGTCAAATACAAACTCATGAACAATTTGAAGCTAGTCTCCAGAAGTTGAATCcataaaatagaaacacagaTTCACTCAGGAACACTTAGAAGTAGCTTGCAGATGCAGATGTTTGCAGCCTTCTACTAGATAGTTATCACCAACA-CAGTCTATAATCATTAcagttcaaagaaacaaaaattcaatgaatcagctgatgaaagacaaaaagaagctcATATGAAAAATCAGCATTAATCCATGAAAAATCTGGACCCAGAAGAAAAGTGAGAAGATTGAGTCATAGTCAGAAGACAGCAGTGGATACTCAGTGTCTATAT--------------ACACACAGTCTGTTAC-CAATATAAGCAGAAAATATGTAATCAGTTACAGTAATCC-AGGAATAGTGAAGACCAATCAGGTAATTAAGACAGACTTCCAGCTTTCACCCATAGCCAATCTGAGTAAGGTCATAAACAATAATGATT

a score=22990
s chr3            93317285  998 + 160039680 Caaaatatctattttaaa--------attaaaaaa---------aaacaatttaaaaat-aCattatttactactgctttcgtgctagaatagcagagttgaatagctgcaagaaagagcatttggcctgcaaatatgatcatatttgctgtccagccatttaaagaaaagttgctgacacctAGTTTAGGAGAACACTGGCCTCAAAGGCATGTTCATCTGCAACAGTCTTCTTACAACTCTTCTCTGCCTCTGAAATAACAACTCTTTACTCAGCAAATTCCACCTCCCCTTGACTCCCACAGCCTCAGTCACACCTTTAAGAAGGTCAGCGCTCTTATGCAGTGTAACAACCTGGCCCAAATCAGGCATCC-GGGGAAATACAACTATGGACTAGACACTGA----ATATTCACCCTCGGGGTAGTTTCTAGAGGAGGAAAAAA-----------AGTCTAATGATAGTTGAAGTTGTGACCATGCAATTTGTCATTTGCCAATAGTTGCTACCACCTCTTCTCAGAT-TTGATGACTATATTATATACATTTTAGGTTAATTTAGCTTAGGATATCTTTAATAAAATTTATGTTATCCATTCTCAATGAATAGAACTTGAGGACAAGATCCACAAAAATGAGCAGAGAATAGCTGGCTCATTTTCAATGCTAA------GATTCAACTGCTAAACTGAATATTGCAAGAAAAGAGACAG------AACTTACTG-------------------------------TCAA----------------------AAAATATATAAATAAAAAGTATAGATTGGTCTGT-----GCAGAGGTCTAAAGGCATGGCC---TTCCTTTTTAACACAACTGAAAGTGGGAAATAGAAATTATATAAGGGAGAAACAAATATGTGTGTAAAAAAGTATTTAACCAAGTTACTAGGA---AATCAAATTATTGGTGATGTATTTTTCTTTCTAGTATATTTCTAGATACTATGATTTTTCTTTCCTTA----------TCAGCATTTTTAACTTCCTACTTTGgaggctgagttaatggctcagtcaataaagtacttatcatacaagcatgagaacttgagta
s HiC_scaffold_1 138962655 1056 - 233722169 CAGaatgttttttataaattaaaccaGTTGAAAAACGTGACatgaaattatatgaaattcataTCGTTTACGGATACTTCCATGCTACAACAGGAGAGTTGAGTAGCTGCAACAAAAACCAACAAGTTCACAGATA-ACTCATATTTATTATCTAGGCTCATACAAAAATGTTGCTGAAAA--AGCTTAGGAGAACACTGGTCTCAAGGGCATATTCACTTGGGATAATATACGGGTAACCCTTTCCTCTATCAGAGACAAC-----TTCACTCAACAAATTCCACCTCCCCTTCACTCCCACAGTCTCAGTCACACCTTTAAAAAGGTCATTGCTCTGATTAAGCATGGCAACCTGGCCCTAATCAGGCATCCTAAGGAAATACAACTACACAATGCATACCGATCCCATA---GCACTCTGCATagttcacagaaaaataaataaataaaacactcaaCTTAATGATGGTTGAATTTGGAGTCACGTAA-TTACCACTTGCCAATAGTTGCTACTACTCTTTCTCAAATCCCAATTATCATATTGCCCAAATTGTAAGTCTAGGTCACTTCAG----TTTCAGTAAAATTTGTGTCATACATTCACAATAGAGAGAACATGAAGA-AATCTCATTAGGGGTAAGCAGAG------------ATTTCCAGTGCTCATGATGGGACTGGAATGATGGAATG---ATGGCAAAAGAGCAGGCAGGTTCTAATCATACTGAGAAAGTTATCACCCCTTTGCCACTTTGAattcaacacaaatgacacatATTTATTGAAGACCTTTATATGCTAGGAATATATTGGTCTCTAAGTGACATGGGAATAAA--CAAGGCCCATTCCCTATCTCAAGGACCTCA------TAAGTAGAAATTATACAAG---TACATAAACAAATGTATATAAGAATAATTAACCAAATTATTAATATTGAACCAAATAAATTGTAGTAGTTATTTACAGCTAGTAGGttcacagtttttattttcttttctacttcaaTATTCTAGttcaatattttctaatttttatattaaa-----cattAATTGCATAGTAAA---------------acaatcatgaaaaataaaata

a score=5544
s chr3            93317529 239 + 160039680 AACTCTTTACTCAGCAAATTCCACCTCCCCTTGACTCCCACAGCCTCAGTCACACCTTTAAGAAGGTCAGCGCTCTTATGCAGTGTAACAACCTGGCCCAAATCAGGCATCC-GGGGAAATACAACTATGGACTAGACACTGAATATTCACCCT-CGGGGTAGTTTCTAGAGGAGGAAAAAAAGTCTAATGATAGTTGAAGTTGTGACCATGCAATTTGTCATTTGCCAATAGTTGCTACC
s HiC_scaffold_1 138938076 221 - 233722169 AACCATTTAACCA-CAAATTCCAACTCCCCTTCACTCCTACAGCCTCAGTCACACGTCTCAAAGGGC---TGATCTCCTGAGTCGTAGCAACCTGACCCACATCAGTAACCCAGAGGCCATATGGCAACATACC---------CTCTCCAGCCTactgggaag----aagggagggacaaCCAATTGAATGA---TTGTaattgaaatcctataatttacGATTTGTCAATGATTCCAGCC

a score=115391
s chr3            93319505 6104 + 160039680 [encoded data, 6762 characters]
s HiC_scaffold_1 138964357 5993 - 233722169 [encoded data, 6762 characters]

a score=6224
s chr3            93319515 346 + 160039680 AGCCCTTCTGCAAAGTGTCCTGAAAGTTGGACAGGTGGGGCTGATACTAGCCCAGATTTGGGAGCTGCTATTGCAATCT-----CAGGTTAACGTGTAAGGAAGTAAGAAGGTAAACAC-CTGGGAGGTGAGATGGAGAAGGAGCTGGACTTGTTTAGGAGTGAACTAGGACATCTCAAAGAAAGCAACTCCTCCCTCAGATGGACATTATAAAAAGGCCAGTGTTTCCAATGAGCAGCACCCTGCAAGCAACATCAGTCTCCATCCCTACTGTTCCTCTGGTGAACCAGGTAAGTGAACAATCACCCA-CTTCTACTCACAGTATTTGGGTCTACTAAATACAAAAGTCCAG
s HiC_scaffold_1 138883235 323 - 233722169 aactgtccaGCAACATGTCCTTATA-TCAGA-AGGTGGAGCCAGTACCAG---------------TTTTTCTGcaatcattttacagatgggaatgTGAAGAAGGTGGAAGATAAACATGCAGACAGGTG-----------GAGTTAGGTTGGATTGAAAATGAATCAGCCCATCCCATTGAAGACAGCACCCACAT--GTTATAAGCTATATAAGGGTCACTTTCCCAATTCATCATCACCCTGCAAGCTCCATCAGGCTTTATCCTACTTCTTCCTTTGGTGAATCAGGTGAGAGAAAACTCATCGAGCTATCACTATGGATATTTAGTGCTATGCTTTACAGAAATGCAG

a score=9201
s chr3            93320534 220 + 160039680 TCTCTTGTTCCCTCAT-CTAGGTTAACTTGAATTTGCAACAAGATGCCTAAACTCCTGGAAAGCATTGTCACTGTCATCGATGTTTTCTACCAGTATGCCACTGAATATGGGAACTGTGACATGTTAAGCAAAGAAGAGATGAAAGAACTTCTGGTAACAGAGTTTCACCAAATTCTGAAGGTAAGAATTCTATACCCAGACTGAATTCTGAAGCAATTCT
s HiC_scaffold_1 138884636 221 - 233722169 tctctctgtctctcttactAGAGTCACTTAAACTTGCAAAAAGATGACAGATCTCTTAAGAAGTCTTGTCACCATCATTGATATTTTCTACAAATACACTGAGCAAGATGGAGAATGTGGCACATTGAGCAAGGATGAGCTAAAGGAACTTCTAGAGAAAGAATTTCATCCAATTCTAAAGGTAAGGACCATGTGCTAGGACTGAAAGCTGATGGGATCCT

a score=6629
s chr3            93320536 193 + 160039680 TCTTGTTCCCTCATCTAGGTTAACTTGAATTTGCAACAAGATGCCTAAACTCCTGGAAAGCATTGTCACTGTCATCGATGTTTTCTACCAGTATGCCACTGAATATGGGAACTGTGACATGTTAAGCAAAGAAGAGATGAAAGAACTTCTGGTAACAGAGTTTCACCAAATTCTGAAGGTAAGAATTCTATAC
s HiC_scaffold_1 139035777 191 - 233722169 tcttgtttcttcttttaggtTTGCCTATATTTTC--CAAAATGCCTCAATTGCTGAACAGCATACTCAGTGTGATCAGAGTGTTCCAGGAATATGCCAAAGAAAATGGAGACTGTACCTCACTATGCAAAAAGGAGCTGAAGCAGCTGCTGTTGACTGAGTTTGGAGACATCCTACGGGTAAGATTCATAGAC

a score=7608
s chr3            93320541 182 + 160039680 TTCCCTCATCTAGGTTAACTTGAATTTGCAAC-----AAGATGCCTAAACTCCTGGAAAGCATTGTCACTGTCATCGATGTTTTCTACCAGTATGCCACTGAATATGGGAACTGTGACATGTTAAGCAAAGAAGAGATGAAAGAACTTCTGGTAACAGAGTTTCACCAAATTCTGAAGGTAAGAATT
s HiC_scaffold_1 138946610 186 - 233722169 tttctctttctaaGTTTACATAAACT-GCACCTCCTAAAAATGTCTACACTCCTGGAAAACATCATTACTATCATTGACCTTTTCCAACaatattcaaaacaagatgaggaGACTGACACACTGAGCAAAAAAGAGCTGAAGGAACTTCTGGAAAAGGAGTTTCGGCCAATCCTGAAGGTAAGCACT

a score=14002
s chr3            93322478 1740 + 160039680 TCAATTTCAACCAAAAT------GTATTAAATATTCATATTTCTACAGCCTTCCCCCAAATGCTTAACTAGCTTTATATTAAATAGTTACAGAACCTTCACTTATACTTTATTCCTTGACAGAATCCAGATGATCCAGACACCGTAGATATCATCATGCAAAATCTGGATCGAGATCATAACCACAAAGTGGATTTTACTGAGTATCTTCTGATGATACTCAAGCTGACTAAGGCTTGTAATAAAATTATTGGCAAAGATTACTGCCAAGCTTCAGGGTCAAAGCAGAAAAATCACAGTCACCAGCACCAAGAGGAACAGAGTAAAAAAGAAACAGAAAACAAGG---------AGCAAAAAGGCTCTTTAAGTTCTAGT--GCAGGAGAGA-------ATGACTCTTATTCCAGGGGCTCAAGAGGAAGCAATAAAAGCAAATCCAAAAAACTAAGAAAAGGGAAGGAGCAAAGTTCTAAACAAACAACAAAATCAAATTCAAGTGATCACGAAAATAGTGAGGATTATGAACAAGGCCAGCATGAATCAGGATTTTCTAACTCATCTGGCAACGGGAGACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGG------AAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCA------TCAGAAGAA------CCTGGCTTTA---CACATGGA-TCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAG-TCA--TGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCT--TCCATGAAGAAGACC----CATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTC------------GTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTC-----------AACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTAC-AGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTG
s HiC_scaffold_1 138885849 1410 - 233722169 TCAATTTAAACTACAACTACATAATgtcaaaaagacacaaattaatATCCTTACTTGGATGTTTTAACTGAAAATTTGGGCAAGACTAACTAGGTCTCCCTTTGTATGTCATTCATAAACAGAACCCAGATGATCCAGAAACAGTGGATGTCATTATGCAAATGCTGGATCGAGATCATGACCAAAGACTAGACTTAATTGAATTTCTTCCAATGGTATTCAAGCTAGTTATGGCCTGCAACAATGTTCTCAGCAAAGAATACTGCAAAGCTTCAGAGTCAAAAAAGCGTAAGCATGGTCATCAG---caagaagaagaaagtgaaacagaagaggaagaagagacacCAAGACAGAAATCAGGTTATAGACGTTCCAGTTGGCAAGAGGGAGAGGAACATGGTTATAGTTCTGGGGGCTCCAGGGGAA---------------CTGCAAAACATAGACATGGG------------------------------TCAAACT-------GCAGGAGACTGGAAAG--------ACAAGGT------------GAAATGTCCATCTCA---------GAGGGATCTGAGACAAG------------------TCACCAT---------------------------------------GAGTCTAGCTATGGTCATTCCTGGAGTAGTGGCGAAGAGAGACGTGGTTCAAGCTCTGGAAGGCTGGAAG--------------------------------AAAGAAG---------------------CAAGTCACATGGTAGAC---TCTAT----AGGGAATCTGGTGAGGAACAGGAAGCTAGAGCTGAGTCAAAGAGCCCAGAAAAGAAACATCatggttctctgtcacatggaCTAGGGATGAAAGGAC-------------------ATGAACCATACTCTACTCGGACAAGAAAGAGTGAAGGACAAACACTTGTATCTATCTCAACAGATTTGGGAGGCAGCAAA---------------GAACAAGG-------------------TCATGCA--------------TGTGGATATAACAATTCCAGTGGATGTAGAAGACCACAAAATGCTTCTAGTTCTTGTCAC---------ACAAGTAGATC------------------------------------------TTGCAGTCAAGAAAATCAATCTAGCTATAAAC------------------------TGTCAGGTTGTCAATCAGG---------AAGTAGTGGAGGTTATAGTCATGGAT---GTATCTCA----------------GGAAGTC-----------ATTCCTCTGGATGTCCTCAGTCTGAGCCTAGCTCCTGTAGGCATTCTTG---TAGGCAGAGAGGATATGGAAATAGACAATGTAGTCAGCCACAGAACTGTGGAGGACAACAGG-----------AAATAAACTCAAGCCAGTCCCCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTCTT---GCTGTGCACAACATGGGCTTGGATCAAATCAATCCACTGGCTATGGTCAGTGTGGGTC-CACTACTTGTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTCAATCTT---GTTGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTATTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAGAACACTGCTTTGGGACAGTGTGAT------TCAGGTCACTCTTCTGATTGTG

a score=4652
s chr3            93322579 340 + 160039680 TTTATTCCTTGACAGAATCCAGATGATCCAGACACCGTAGATATCATCATGCAAAATCTGGATCGAGATCATAACCACAAAGTGGATTTTACTGAGTATCTTCTGATGATACTCAAGCTGACTAAGGCTTGTAATAAAATTATTGGCAAAGATTACTGCCAAGCTTCAGGGTCAAAGCAGAAAAATCACAGTCACCAGCACCAAGAGGAACAGAGTAAAAAAG----------AAACAGAAAACAAGGAGCAAAAAGGCTCTTTAAGTTCTAGTGCAGG-----AGAGAATGACTCTTATTCCAGGGGCTCA-AGAGGAAGCAATA-------AAAGCAAATCCAAAAAACTAAGAAAAGGGA
s HiC_scaffold_1 139083423 339 - 233722169 tttatcttttcatagaGACCACATGACCCTGAGACAGTAGAAACGATCCTGGGACTTCTGGATCGTGATACTAATGGAATTGTTGATTTCAATGAATTCCTCCTGTTCGTTTTCAAAGTGGCTCAAGCTTGCTATTATGCTCTCG------------GCCAGGCCACAGTGCTAGATGAGGAGAAGCA-AGTCC-----------AGGGTGAGAGAAAGAGGGGCCTGTCACAAGACAGAAGGCAAGAAGACCAAAGGACATTCGAGAGCCTGGACAGACAAGTGGATGAAGAATCTGGTCGCCGACGCTGGCAGAAGAGGCCAGAACTGGAGAAAGCTGAGGAAGaagaccaaagaaagaaa

a score=6286
s chr3            93322585 373 + 160039680 CCTTGACAGAATCCAGATGATCCAGACACCGTAGATATCATCATGCAAAATCTGGATCGAGATCATAACCACAAAGTGGATTTTACTGAGTATCTTCTGATGATACTCAAGCTGACTAAGGCTTGTAATAAAATTATTGGCAAAGATTACTGCCAAGCTTCAGGGTCAAAGCAGAAAAATCACAGTCACCAGCACCAAGAGGAACAGAGTAAAAAAGA-AACAGAAAACAAGGAGCA---AAAAGGCTCTTTAAGTTCTAGTGCAGGAGAGAATGACTCTTATTCCAGGGGCTCAAGAGGAAGCAATAAAAGCAAA----------TCCAAAAAACTAAGAAAA----GGGAAGGAGCAAAGTTCT---AAACAAACAACAAAATCAAATTCAA
s HiC_scaffold_1 138947342 364 - 233722169 CTTTCACAGAATCCAGATGATCCAGACACTACAGAAGTTTTTATGCATATACTAGACATAGACCACAATGAAAAAATAGACTTCACAGAGTTCTTGCTGATGGTATTCAAGCTGGCTCAAGCATATTACCAGTCTGCTGGGAGTAAACATTCACATGt------acaaaagcacaaaaagaatGTTCATGATGAGGAAGATGAAGATGATGAGATAGATGACACAgtacaagaaaaaaggaaaataccttATAA----TGCTTCAAGACAAAGTGGt--------------------aggaaacaaaacagacaaagatCCAACAGTCCGAAAGGCAATGGAAAATACAAGCATAGGTCAAGCTCTGGAAAAcgaacaaataaaaggaaatcaa

a score=28362
s chr3            93322929 2303 + 160039680 TTCTAAACAAACAACAAAATCAAATTCAAGTGATCAC---GAAAATAGTGAGGATTATGAACAAGGCCAGCATGAATCAGGATTTTCTAACTCATCTGGCAACGGGA------GACCTAGCTCAAGGAAAGCTTCTGGCT----------------TCCCTCAACC--------------TGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGAT-------CAGCAGTT--------TCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA---CACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATAT---------ACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGT---------GCCTCATCAGGACAGTCTTC-------AGGCTGTTCGTCAGGTC-----------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138968210 2156 - 233722169 TTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCA--AACA-------CATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCC---------------------TCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC-AAAGTTCAGCCATT-----CTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT----------------------------------------------------------------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAA---------------------------------------------------------------TCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=32734
s chr3            93322980 2109 + 160039680 TTATGAACAAGGCCAGCATGAATCAGGATTTTCTAACTCATC------TGGCAACGGGAGACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATC------TTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA---CACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCA------------ATCAATCACCTCTGCTA---------ACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCA--------CAAGAGAG-TGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCA---TCAGGACAGTCTTCAGGC--TGTTCG-------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCT------------TCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAG
s HiC_scaffold_1 138968369 2010 - 233722169 TTATGAACA------GTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCA------------------------GGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCT------TTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATG-------GCCGACACAGAACT-----------------------GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT------------------------------GTGGTA---------CAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCCTTCATCTGTCTCTGG------------------ACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACAAGGAGG

a score=23199
s chr3            93322985 1580 + 160039680 AACAAGGCCAGCATGAATCAGGATTTTCTAACTCATCTGGCAACGGGAGAC------CTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTT----CAGAAC-----CAGGACAATCTTCTAGCTCCAG----TACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTC-AAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT--------------TCG-TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA---------------------ATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138968881 1469 - 233722169 AGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGG-TCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATC------------------------CGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAA------GTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCT----------------TTGGTCA--------------------ATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGG-------CATAGACCA--ATCCTGT--AGCAATGGGC-------AACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAG-CCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTT---------CATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG------------------------TGGTCAACATGG---------ACCCAACTCA---GCCCAA---------------------------TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=19274
s chr3            93322989 1638 + 160039680 AGGCCAGCATGAATCAGGATTTTCTAACTCATCTGG-------CAACGGGAGACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCT-----------------CCAGTACAAAA-------------------GGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATC-----------AGCAGT----TTCTGGCTCAGGTCACTCTAACACC---------TATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCT---------CTGGATCATCAGAAGAACCTGGCTTT---ACACA----------TGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCA-ACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATC-------AATCAC--------CTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCA----TGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGA------CAAAATTATA------------------------ACTCCACTAG---------ACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT------------TCG---TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAA----CAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCA------------------------------GCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138968607 1763 - 233722169 AGGCCA-CATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGA-ATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCA-------AGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACA-ATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG----CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC------ATGCTGTGG----------TCAA-----------------------CATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=22876
s chr3            93322989 1935 + 160039680 AGGCCAGCATGAATCAGGATTTTCTAACTCATCTGGCAACGGG------AGACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCAGC-AGTTT--------------CTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCA--TCAGAAGAACCTGGCTTTACACA---TGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAG------ACAT---CAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGG-------------CACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTT---TCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGAC-----------------------------AAGGCAAGTC----TTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCA---------------GGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138968450 1920 - 233722169 AGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACT--TCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGAT------------------ATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAAC----TGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCT-----------------------CAGCA----------------CAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAG-----TTGTT----------------GTTCTAGTCATAGCCAA----------------------------CAT--------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=10123
s chr3            93322991 889 + 160039680 GCCAGCATGAATCAGGATTTTCTAACTCATCTGGCAACGGGAGAC------CTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGA-----GGATCAGCA-GTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA---CACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138969595 775 - 233722169 GCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTG---TGGACAA---------------CATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCA------------------------------ACTCT---------GGCCAATATGGATCTGCCTC---------------------------AAGTTGTTG------------TTCTAGTCATAGCCAACAT------------------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=26113
s chr3            93322991 1753 + 160039680 GCCAGCATGAATCAGGATTTTCTAACTCATCTGGCAACGGGAGACCT------AGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGC---------------TCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCA---------ACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAA-----ATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAG----------------GTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968569 1801 - 233722169 GTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGC-------------------AGTGGTCAGCATGGCC--------AACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGAT---------------ATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAA-----------GTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCT-TTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=15959
s chr3            93323017 1214 + 160039680 TCATCTGGCAACGGGAGAC------CTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCA-----------GCA----GTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA---CACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGAT-----TTGGATC-------------TAGTCA---TGAATTAGAATCCGGTCAATCAATCACCTCTG------------------------------CTAACCATGGC---------TCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT--TCG-------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138969042 1328 - 233722169 TCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=18273
s chr3            93323032 1478 + 160039680 AGACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGT---TCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTC---------TGGTAATGGA---AAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGC---------TCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCT-----AGCG-AGTCTTCCATGAAGAAGACC--CATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138968982 1391 - 233722169 AGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCA--AAGTTCAGCCATT-CTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCT---------------AGCTTTGG----TCAG-----------------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCA---------------------------CTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCC------AATATGGGTCTTCCTCAGCACAGTCTTC--TGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAG----------GTTTAGCC--------------AACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=11213
s chr3            93323033  956 + 160039680 GACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGT---------TCATCATCAGG----------AGGATCAGCAGTT-----TCTGGCTCAGGTCACTCTAACACC---------TATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGA---AGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCA--TCAG-------------AAGAACCTGGCTTTACACATGGA---------------------TCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTT--------------TCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT--TCGTCA-------------GGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTG--------------CCAGCTCTGGTCAG
s HiC_scaffold_1 138968770 1037 - 233722169 GATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGG---------AGAGTCCTCT---------AGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGG-GCAACACAGTTCAGCTTCAG-------------GAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAG

a score=21277
s chr3            93323033 1155 + 160039680 GACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGG-----------------ATCAGCAGTTTCTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA--CAC-ATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCA----TGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTC------TGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCT-------------GTTCG--TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138969175 1191 - 233722169 GATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTT--GGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------------------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAA----CAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAA---------TCACCTAG------TTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=21046
s chr3            93323033 2011 + 160039680 GACCTAGCTCAAGGAAAGCTTCTGGCTTCCCTCAACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGCT-CAGGTCACTCTAA----------------CACCTA----TGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTTAC---ACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAAC-AGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGA-----GTGTGGGTCTAGCGAGTCTTCCA-------TGAAGAAGACC--CATGTTTCTGGTTCAGGACACTCTTC-AAGTACAGGTAA-ATA-TACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAG------GCTGTTC---GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCA
s HiC_scaffold_1 138968461 1912 - 233722169 GATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGG----CCAGTA--TTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACA-GGCAATATCGGTCTGGTTCAAGT-------TCATCTCCTAGCAGT-GGTCAGCATGGCCAAC-ACAGATCTGGATCAAGCCAATCTTC-----TAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TC------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCA------------------ACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCT---------------------------------------AACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=23095
s chr3            93323067 2208 + 160039680 ACCTGGTTCAGAACCAGGACAATCTTCTAGCTCCAGTACAAAAGGATCTGGCGAATGTTATTCTTCTGGTAA------------------------------TGGAAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCTGGCT---------------CAGGTCA-CTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATC---------------------TTCTGGCTC----------CCAAGA--------ATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA---CACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCA----TGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTC-AAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGT---------TGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTT----TGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG---TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968270 2100 - 233722169 ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTA-GGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCA--------------GTCCTCTAATTA-------TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAG----CATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAA-TATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGT------GGTCAGT---------ATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCA----GCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA---------------------------------------CAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCA---------------------------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTA---ACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=24627
s chr3            93323081 2421 + 160039680 CAGGACAATCTTCTAGCTCCAGT--ACAAAAG----GATCTGGCGAATGTTATTCTTCTGGTAATGGAAAACATGGTTCATCATCAGGAGGATCAGCAGTTTCT---GGCTCAGGTC--ACTCTAACACCTATGGTAAACAAGGAA------------------------CAGGATCAAGGCATTCATCAAGCAACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGC------TCCCAAGAATATAGCTC--TGGATCATCAGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGT---------------------CATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT------------TCG---TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTA---------------------------------CCCAAAGCAGAGG---------------CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCG---------------------TGGTGGACAGCAGGGTTCCTTCTCTGG-----ACAGA-----CAGAAGGCAGTC-----------AACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138968122 2286 - 233722169 CAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGT------CTTCTAGCTATGGACAATATGGTTC--------TGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAG--------------TATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA---------------------------------------ACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT--------------------------------AACCAAAGG-------CAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGG-ACA--------------------------------------ACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=28032
s chr3            93323177 2377 + 160039680 CTGGCTCAGGTCACTCTAACACCTATGGTAAACAAGGAACAGGATCAAGGCATTCATC-AAGCAACAGGAGAA-------GCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCATCAGAAGAACCTGGCTTT---ACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGA-GAGTGTGGGTCTAGCGAGTCTTCCA--TGAAGAAGACCCATGT-------------------------------------TTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTC-------CACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAG----------------GTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGC---TCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138968155 2218 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGT--TGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCC-----------------------ACCTCAACAAG---TTATGAACAGT-ATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGC-TTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTC-------AAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTT-TTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC------------------------------CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------------------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAGA--GACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTC---CAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTA---------ACTATGGT---------GGATACAGGTCTAGCTC---------------------AGGTCAGTT----------------------GCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=29907
s chr3            93323189 2482 + 160039680 ACTCTAACACCTATGGTAAACAAG------GAACAGGATCAAG-GCATTCATCAAGCAACAGGAGAAG--CAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGGATCA-------TCAGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCA----TGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCA---GGACA------AAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGG-------TCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT------------GGTGCCTC------------------------------------ATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGC---------TATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138967879 2491 - 233722169 ACTCAAGCAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaag----taataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT---------------AGTCATCATCTAGAA---------AGCTGTGAACTGGAGT---------------------------ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAA----TATGGTTCTGGGTCCAGCCATTTTTCTAGGCAA---AAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGG------ATCTGG-CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCT--------------CAAAGTTCAGCCATTCTAG------GTCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTC------------------TGCCTT---------------------TGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=22955
s chr3            93323225 2230 + 160039680 GGCATTCATCAAGC------AACAGGAGAAGCAGGTCTACCTCAAGGGAATCTTCTGGCTCCCAAGAATATAGCTCTGG-----ATCA---------TCAGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAA------------TCAATCACCTCTGCTAACCATGGC---------TCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCG-AGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCA------------GGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGG---------GTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTC-----AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTC
s HiC_scaffold_1 138968242 2089 - 233722169 GGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACC-----------ATGAATCC---------ACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTG-AACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATCA---GTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTA-------TGCCTGAACACTATG--AGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCC

a score=9516
s chr3            93323285 1087 + 160039680 AATATAGCTCTGGATCATCAGAAGAACCTGGCTTTA---CACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTT------------------GGATCTAGTCA---TGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAA------------------------------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCT-ACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATC
s HiC_scaffold_1 138969286 1084 - 233722169 AACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGT------GGATACAGGTCTAGC---------------------------------TCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATG---------------AATCT---GGCT------CAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TCA------TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACA---CTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACA-ATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=5885
s chr3            93323289 604 + 160039680 TAGCTCTGG--ATCATC-AGAAGAACCTGGCTTTACACATGGATCTGGTCGAAAAAACTCTTCTACTTGTGGAAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCAT------------GAATTAGAATCCGGT---------CAATCAATCACCTCTGCTAACCA------TGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCA---------GGACACTCT---TCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCT-------------GTTCG--TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG
s HiC_scaffold_1 138968072 640 - 233722169 TAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGT---CATCAAACTGTGGTCAGTATGGATCTTCAACT------------------GGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAG

a score=15124
s chr3            93323358 1545 + 160039680 AAAAAACGGTTCCTACTCTGGACAGTCAACAGGCAGACATCAACAAGGATTTGGATCTAGTCA---------------------TGAATTAGAATCCGGTCAATCAATCACCTCTGCT------AACCATGGCTCTCATTCTAATCAGTCATC----ATGCAGTGGCACAAGAG----AGTGTGGGTCTAGCGAGTCTTCCAT---------GAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATA----------CATCCACTT--CAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT--TCAGGATCAC--GTAACTCATCTACCCAAAGCAGAGGCAG-----GTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGC---------TATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG---------GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------TGTGGG------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTC
s HiC_scaffold_1 138967943 1644 - 233722169 AAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCC------CTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGA-ACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGAC---------TAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGG--GCATTCAGG--AAGT--TGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATC---TGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT---TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTC

a score=12692
s chr3            93323395 1868 + 160039680 CATCAACAAGGATTTGGATCTAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTG-TGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCA---GGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTA------TAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCA---------GGACAGTCT---TCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGG-----------------------CAC-------------ACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT------------GGTGCCTCATCAGGACAGACTTCAGGCTG-------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAA--GGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAG-TGGAGTCA----CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGG---ATCACGTAACTC--ATCTACCCAAAGCAGAGGCAGGTC---TACCTCA--AGGG--------------AGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138968085 1892 - 233722169 CATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGG-ACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAA---TATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGG------GTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATC-TCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT------TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATC---TAGGTTTGGGCA---------------ACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAG-------ACACCAAGCTATAGCCAACAGCGGTT-TGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAG---------------TCACCATAG---GTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAG--CCAACACGGGTG------------TGAATCAAATCAG-TCT--------TCTGCCTT-------TGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--------TCA-TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtag

a score=16486
s chr3            93323415 1286 + 160039680 TAGTCATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAGCGAGTCTTCCA----TGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCT-------------GTTCG--TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAGG----------GTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------------CTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG--TTCTGGCACAC-ATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTG
s HiC_scaffold_1 138969056 1310 - 233722169 TAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCA--AAGT----TCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAA----TATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATA------TATC------------------TGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT------------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGT---GGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=13473
s chr3            93323419 1039 + 160039680 CATGAATTAGAATCCGGTCAATCAATCACCTCTGCTAACCATGGCTCTCATTCTAATCAGTCATCATGCAGTGGCACAAGAGAGTGTGGGTCTAG-CGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAG-----ACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAG------------------------------GTGG---------AAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138969366 1042 - 233722169 CATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGC-CAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGG------------------------TGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=9561
s chr3            93323505 1003 + 160039680 TGGGTCTAGCGAGTCTTCCATGAAGAAGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCT------------GTTC---GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTA------------------------------------TGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGC---------TCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT----------GGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCA---------------------GGTCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGG-ACAGAC--ATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCT
s HiC_scaffold_1 138968279 1057 - 233722169 TGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATCAGTCTGGTTCAAGTTCATCTCCTAG---CAGTGGTCAGTATGGCCGACA----CAGAA--CTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCA-TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGG------ATCTGGCATAGACCAATCCTGTAGCAATGGGCA---------------ACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTT

a score=26580
s chr3            93323531 1786 + 160039680 AGACCCATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT---------------TCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAG------------------------------------CTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGG---------ATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATATGGTGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA-GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATC
s HiC_scaffold_1 138968266 1780 - 233722169 AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA---------CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCAT------------------GGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCT---AGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCT-------------------------ATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--TCATGCTG-------TGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC

a score=9844
s chr3            93323536 634 + 160039680 CATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT
s HiC_scaffold_1 138968457 628 - 233722169 CATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCT

a score=27585
s chr3            93323537 2157 + 160039680 ATGTTTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACA---ATATGGTGCCT-----CATCAGGACAGTCTTCAG-------------GCTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGAC-----AACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGT---GGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAG----------GGTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------------CTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCT------------------CATCACG------------GTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCT
s HiC_scaffold_1 138968110 2244 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAG--CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCT------AGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAG---CAATGGGCA---------ACACAGTTCAGCTTCAGGA----------GAGACACCAAGCTATAGCCAACAGCGG--TTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATA------TATC------------------TGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAA---TATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTT

a score=10773
s chr3            93323541 678 + 160039680 TTCTGGTTCAGGACACTCTTCAAGTACAGGTAAATATACATCCACTTCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGGCT------------GTTCG---TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTC---------------TGGACA---------------AGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138969137 723 - 233722169 TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGG

a score=37139
s chr3            93323587 2201 + 160039680 TCAGGACAAAATTATAACTCCACTAGACAAGGTTGCGGACAAGGCAAGTCTTCTGGGTCTGAACAATATGGTGCCTCATCAGGACAGTCTTCAGG---------------CTGTTCGTCAGGTCAGTCCACTCGCTATGGTGAACAAG------GTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACA-----------ACAGGGTTCG------------TTCTCTGGACAGAC-ATCAGGTAGA---AGTCAGCATCAATCTGGCTCCAGGCATGG---------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968121 2249 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAG---------TTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCA---------------------------------------TAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=41193
s chr3            93323648 2485 + 160039680 AACAATATGGTGCCTCATCAGGACAGTCTTCAGGCTGT---------------TCGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACA----TCTCAAC---AGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCT------------TCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAG
s HiC_scaffold_1 138967942 2437 - 233722169 AAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGG------------------------TCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCCTTCATCTGTCTCTGG------------------ACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACAAGGAGG

a score=30259
s chr3            93323665 2303 + 160039680 TCAGGACAGTCTTCAGGCTGT--TCGTCA-------------GGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTC---------------TGGGTCA------------------GGACGATGTGGCGCCTCATCAGGACAGACTTCA---------------GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138968121 2249 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCA---------------------AGTTGTTGTTCTAGTCATAGCCAA----------------------------CAT--GGATATGCCTCAAG--------TATGCCTGAACACT-------ATGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=34825
s chr3            93323705 2571 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---------TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138967888 2478 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT----------------------------------------------------------------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCT---------------------ATGGTCAG------------------------------------------CAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=13261
s chr3            93323748 1354 + 160039680 AAGCAGAGGCA-----GGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGG---------ATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAG--------------GCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC
s HiC_scaffold_1 138968832 1179 - 233722169 AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGG--CCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---------------------------------------GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCA---------------------------------------CAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TC------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGC

a score=26481
s chr3            93323759 2329 + 160039680 GGTCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCG---------------TGGTGGACAGCAGGGTTCCTT---CTCTGGA---CAGACAGAAGGC---------AGTCAAC---------------AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA---CTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGG------------TCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTC---ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATGTGGCGCCTCATCAGGAC--AGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGC---------------------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCA--AGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCA
s HiC_scaffold_1 138968113 2260 - 233722169 GGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGG---TCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC---CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTC-----------AGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCT---------------------------------------AACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=11993
s chr3            93323761 1307 + 160039680 TCTACCTCAAGGGAGTCTTCTACATCTCAACAGTTTGGATCTGGCTCAGGAAGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGG
s HiC_scaffold_1 138969138 1181 - 233722169 TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG---------AACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGG

a score=29615
s chr3            93323831 2715 + 160039680 AAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCT---GCCAGCTCTGGTC---AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGG---TGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGA-----CAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG-------TCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138967945 2463 - 233722169 AATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGA---GTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC--------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGG------ATCTGG-CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTA-------------------------------------------------------GTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT--------------------------------AACCAAAGG-------CAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGG-ACA--------------------------------------ACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=19679
s chr3            93323835 2277 + 160039680 TGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCA-------------------GCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGT----------GGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG---------------------TCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGG
s HiC_scaffold_1 138968111 2208 - 233722169 TGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAA-CATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCAT-TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG---------AACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGG

a score=31621
s chr3            93323902 2696 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138967932 2441 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC------------------------------CGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---------------------TAGGTCTAGTTCACAG---------------CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=12692
s chr3            93323908 952 + 160039680 CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAGGAC-GATATGGT-----------GCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGAT
s HiC_scaffold_1 138969441 940 - 233722169 CAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG--AACACTATGAG-TATGGTTC------ATGTCCTTCATCTGTCTCTGGACAATGTGGTTC------------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---ACAAGGAGGAt

a score=29588
s chr3            93323951 2368 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968110 2260 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA---------------------------------------CAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCA---------------------------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=19325
s chr3            93324042 2104 + 160039680 AAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGACAAACTTCTAGCTCCACTAGACAGGG---TTCTGGAC------AAGGTCAGGC------CTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC
s HiC_scaffold_1 138968123 1888 - 233722169 AGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAG------TCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAAGTTATGAACAGTA----TGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACA-----------GGGGTCTGGC----------------------------TCAGAAGAGTCTTTTGGTT----------TTAGTC-------------------------------------------------AGCA----CAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TC------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGC

a score=42434
s chr3            93324082 2571 + 160039680 GGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGC---------TATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA---------------------ATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138967845 2505 - 233722169 GGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC------------------GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAG------CATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTT----------------------GCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATC------------------------------ATCATGCTGTGGTCAGC------------------ATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG------------------------TGGTCAACATGG---------ACCCAACTCA---GCCCAA---------------------------TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=25143
s chr3            93324196 2439 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATATGGTGCCTCATCAGGA--CAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAG-----ACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAA-GGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAG---GTAGATCTGGGCAAGGTCGATCTTC-TCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA--CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCA
s HiC_scaffold_1 138968121 2250 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCA------------TGAATCCACCTCA---ACAAGTTATGAACA------------GTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCAT---------GCAGTTATGGT------------------------------GAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAG--AGACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAA---TCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACAC------------------------GGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCT----------------GGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGA---TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCAT----------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCC------------------------AACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAA--CATGGATATGCCTCAAG-------TATGCCTGAA--CACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTC---------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=21540
s chr3            93324211 1798 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGG----------AGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTC---TGGACA------------------------GCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATG---------GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTG-----GGTCA----GGACGATATGGTGCCTCATCAGGACAGACTT-------CAGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGC---------TCCAG------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTT
s HiC_scaffold_1 138967950 1816 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT----ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCT---AGTCAGAAATACCATGAATCCACCTCAACA---------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGG---------------------------------------CTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTT

a score=13309
s chr3            93324220 1684 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTC------AGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCAAAAT---GAATATGGCT----CAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCT---------TCCAGCTAT-------GGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTT----CAGGTTTAGGTCAATATG--GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATATGGTGCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGAT
s HiC_scaffold_1 138968739 1642 - 233722169 TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTAT------GGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC-----------AGGCTTAGATCAATCT----------TCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTC-------TAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAA-------TCAAATCAG----------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA--ACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA------------AGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTC------------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---ACAAGGAGGAt

a score=30478
s chr3            93324236 2479 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGG--TTTGGGTCATT-------ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG---------GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAG----ACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGT---GGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAG----------GGTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTG-----GGTC----------------------------------AGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138967888 2482 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCT------AGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA-----------------------------ATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATC----------CACAATCAA------------CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCT------AGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAG---CAATGGGCA---------ACACAGTTCAGCTTCAGGA----------GAGACACCAAGCTATAGCCAACAGCGG--TTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=37512
s chr3            93324436 2396 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACA-----------ACAGGGTTCG------------TTCTCTGGACAGAC-ATCAGGTAGA---AGTCAGCATCAATCTGGCTCCAGGCATGG---------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138967932 2438 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGC---ACATGGGCA---TTCAGGAAGTTGTGAAAATCAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAG---TCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCC------------------------AACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCA---------------------------------------TAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=27065
s chr3            93324445 1916 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGG----TTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCA------------------------------GCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATC
s HiC_scaffold_1 138968127 1919 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAAC------------AGTATGGGTCAGGGTCAGG----TAAGTCATCAAACTGTGG-------TCAGTATGGATCTTCAACTG--------GTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------AAAGTTCAGCCATTCTAGG------TCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC

a score=15358
s chr3            93324587 2202 + 160039680 CTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG---TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGAC-----AACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC----CAGGCATGGATCTG-GCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAG----TCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTC---------TGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATG--ATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTAC--CTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTC---------------TGGACA---------------AGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------------CTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG--TTCTGGCACAC-ATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTG
s HiC_scaffold_1 138968155 2211 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------TTTTTCTAGGCAAAAATATAAATCCAGT---GCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAG--CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAA--CCTGGTCAGTC---CTCAAAGTTCAGCCATTCT---AGGTCAAGT---CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGC----AACATGGTTATGGCTCAGGAGAGTC---CTCTAGCTTTGGTCAGCATG---GATCTGGCATAGACCAATCCTGTAGCAATGGGCAA---CACAGTTCAGCTTCA---------GGAGAGACACCAAGCTATA--GCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAA----------CATGTGTCTGGT----TCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGA---TCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTC------TGGTTTAGGTCAATCTTCTAACTATGG-TGGATACA-----------------GGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT------------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGT---GGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=41356
s chr3            93324593 2584 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGATGAACA-------------------------AGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCT------------TCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAG
s HiC_scaffold_1 138967843 2536 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT------------------------------GTGGTA---------CAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCCTTCATCTGTCTCTGG------------------ACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACAAGGAGG

a score=30604
s chr3            93324695 2317 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA----------TCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAG--GGTCAAGC---CAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA---------------GGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138968113 2257 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCA-AGCCAATCTTCTAG-----GCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCA------GCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAG-----TTGTT----------------GTTCTAGTCATAGCCAA----------------------------CAT--------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=20566
s chr3            93324724 2432 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGG----CTTTAGTCAAGG---TGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCA-------------------GCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA----GGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG-----------------------------CAGAG----GCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGG
s HiC_scaffold_1 138967950 2369 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAA-CATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAAT-------CTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG---------AACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGG

a score=27434
s chr3            93324724 2408 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------GGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCT------------CTGGACAGA------------------CAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGC-----------ACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGC---------------------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCA--AGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCA
s HiC_scaffold_1 138968112 2261 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACA------------------------GGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCAT------GGCC---AACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------------------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTC-----------AGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCT---------------------------------------AACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=16582
s chr3            93324730 1530 + 160039680 GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAAC------TCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------TGTGGG------TCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCT
s HiC_scaffold_1 138968388 1503 - 233722169 GGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCA------ACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG-------CCAACACAGA--------TCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCA-----AAG----------------TTCAGCCAT---TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT

a score=35206
s chr3            93324749 2571 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---------TCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTAT----GATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATC-----TCAAC---GGTTTGGATCTGGC---------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138967888 2478 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC-------CGACACAGAACT--------GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT----------------------------------------------------------------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAA---------------------------------------------------------------TCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=18607
s chr3            93324803 2017 + 160039680 GGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCG---------------TGGTGGACAGCAGGGTTCCTT---CTCTGGA---CAGACAGAAGGC---------AGTCAAC---------------AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA---CTCAGGTGG-AAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGG------------TCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTC---ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---TCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG----GTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTA--CCTCAAGGGAGTCTTCTACATCTCAACGG-----TTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAG---GTAGATCTGGGCAA---GGTCGATCTTCTCGTGG------------TGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138968113 1981 - 233722169 GGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCC----TCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC---CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCT----------GGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGG-------TTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCT---GGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGG

a score=7353
s chr3            93324811 485 + 160039680 TCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGG
s HiC_scaffold_1 138968391 497 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG

a score=29645
s chr3            93324875 2715 + 160039680 AAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCT---GCCAGCTCTGGTC---AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGG---TGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGA-----CAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG-------TCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138967945 2463 - 233722169 AATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAG---TCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC--------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGG------ATCTGG-CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA---------------------------------------ACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT--------------------------------AACCAAAGG-------CAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGG-ACA--------------------------------------ACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=31208
s chr3            93324946 2696 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTG-------------GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138967932 2441 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTA----GCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC------------------------------CGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---------------------TAGGTCTAGTTCACAG---------------CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=12158
s chr3            93324952 947 + 160039680 CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGG
s HiC_scaffold_1 138969363 830 - 233722169 CAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCT-----CAATATCAGGAC----AGTCATCATGCTGTGG-------TCAACATGGACCCAA--------CTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG

a score=29104
s chr3            93324995 2368 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC-----TCCACTAG----ACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTT----TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968110 2260 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCA----GCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA---------------------------------------CAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCA---------------------------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=19195
s chr3            93325093 2097 + 160039680 TCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGACAAACTTCTAGCTCCACTAGACAGGG---TTCTGGAC------AAGGTCAGGC------CTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC
s HiC_scaffold_1 138968130 1881 - 233722169 TCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAG------TCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAAGTTATGAACAGTA----TGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---------------------------------------GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCA---------------------------------------CAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TC------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGC

a score=42303
s chr3            93325126 2571 + 160039680 GGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGC---------TATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA---------------------ATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138967845 2505 - 233722169 GGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC------------------GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAG------CATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTT----------------------GCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATC------------------------------ATCATGCTGTGGTCAGC------------------ATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG------------------------TGGTCAACATGG---------ACCCAACTCA---GCCCAA---------------------------TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=25020
s chr3            93325240 2439 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATATGGTGCCTCATCAGGA--CAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAG-----ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAA-GGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAG---GTAGATCTGGGCAAGGTCGATCTTC-TCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA--CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCA
s HiC_scaffold_1 138968121 2250 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCA------------TGAATCCACCTCA---ACAAGTTATGAACA------------GTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGA---------------------------------------TCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAG--AGACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAA---TCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACAC------------------------GGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCT----------------GGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGA---TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCAT----------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCC------------------------AACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAA--CATGGATATGCCTCAAG-------TATGCCTGAA--CACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTC---------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=20701
s chr3            93325255 1866 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGG----------AGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTC---TGGACA------------------------GCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGG---------ATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATATGGTGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGC---------TCCAG------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTG--------------CCAGCTCTGGTCAG
s HiC_scaffold_1 138967950 1857 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT----ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCT---AGTCAGAAATACCATGAATCCACCTCAACA---------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGG---------------------------------------CTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATA---------------------GTCA---CCATAGGTC---------------------------------------TGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAG

a score=12782
s chr3            93325264 1684 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTC------AGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCAAAAT---GAATATGGCT----CAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCT---------TCCAGCTAT-------GGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTT----CAGGTTTAGGTCAATATG--GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATATGGTGCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGAT
s HiC_scaffold_1 138968739 1642 - 233722169 TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTAT------GGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC-----------AGGCTTAGATCAATCT----------TCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTC-------TAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAA-------TCAAATCAG----------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA--ACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG--AACACTATGAG-TATGGTTC------ATGTCCTTCATCTGTCTCTGGACAATGTGGTTC------------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---ACAAGGAGGAt

a score=30756
s chr3            93325280 2479 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTC------GCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG---------GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAG----ACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGT---GGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAG----------GGTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTG-----GGTC----------------------------------AGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138967888 2482 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCT------AGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGG---AAGTTGTGAAAAT------------CAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATC----------CACAATCAA------------CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCT------AGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAG---CAATGGGCA---------ACACAGTTCAGCTTCAGGA----------GAGACACCAAGCTATAGCCAACAGCGG--TTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=37366
s chr3            93325480 2396 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACA-----------ACAGGGTTCG------------TTCTCTGGACAGAC-ATCAGGTAGA---AGTCAGCATCAATCTGGCTCCAGGCATGG---------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138967932 2438 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGC---ACATGGGCA---TTCAGGAAGTTGTGAAAATCAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCA---------------------------------------TAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=26807
s chr3            93325489 1916 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGG----TTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCA------------------------------GCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATC
s HiC_scaffold_1 138968127 1919 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGA------------ACAGTATGGGTCAGGGTCAGG----TAAGTCATCAAACTGTGG-------TCAGTATGGATCTTCAACTG--------GTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------AAAGTTCAGCCATTCTAGG------TCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC

a score=10386
s chr3            93325625 1428 + 160039680 ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCA--CTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGC---------TCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT----------GGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG---------------------TCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGG-ACAGAC--ATCAGGTAGAAGTCAGCATCA--ATCTGGCTCCAGGCATGG-ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAG---GGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAA---CTCAGGGTCAAGCCAGTCT---TCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCT---TCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTT
s HiC_scaffold_1 138968380 1386 - 233722169 ATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGG-TGAACAGAGTTCAGGCTCA-------GAACAGTCTTCAAGAT------------------ATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCAT-TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGG------ATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCA---------------ACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCC--TCAGCACAGTC----TTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCT---TCCA--------------GCTATAGTCAC----CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTT

a score=14606
s chr3            93325631 2202 + 160039680 CTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGG---TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGAC-----AACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC----CAGGCATGGATCTG-GCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCC-ACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTT-TGGGTCATTATGGTTCCACA-------TCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGA----CAGACTTCAG---GCTGTGGGTCAGGTCAGTCCACTCGCTATG--GTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTAC--CTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTC---------------TGGACA---------------AGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------------CTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG--TTCTGGCACAC-ATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTG
s HiC_scaffold_1 138968155 2211 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------TTTTTCTAGGCAAAAATATAAATCCAGT---GCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAG--CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAA--CCTGGTCAGTC---CTCAAAGTTCAGCCATTCT---AGGTCAAGT---CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCA----TCTAGGTTTGGGCAA---CATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGAT--CTGGC----ATAGACCAATCCTGTAGCAA-----------TGGGC---AACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAA----------CATGTGTCTGGT----TCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGA---TCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTC------TGGTTTAGGTCAATCTTCTAACTATGG-TGGATACA-----------------GGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT------------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGT---GGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=41151
s chr3            93325637 2584 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACA----TCTCAAC---GGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCT------------TCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAG
s HiC_scaffold_1 138967843 2536 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT------------------------------GTGGTA---------CAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCCTTCATCTGTCTCTGG------------------ACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACAAGGAGG

a score=17213
s chr3            93325664 1640 + 160039680 ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACACCGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA---CGATGTGGC-GCCTCATCAGG------ACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAAC------TCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------TGTGGG------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCT
s HiC_scaffold_1 138968272 1619 - 233722169 ATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTAT---GGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCA------ACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG-------CCAACACAGA--------TCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCA-----AAG----------------TTCAGCCAT---TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT

a score=29965
s chr3            93325739 2317 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTC---------------TGGGTCA------------------GGACGATGTGGCGCCTCATCAGGACAGACTTCA---------------GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138968113 2257 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAG-----TTGTT----------------GTTCTAGTCATAGCCAA----------------------------CAT--------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=20803
s chr3            93325768 2432 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTAC--------ATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGG----CTTTAGTCAAGG---TAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCA-------------------GCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA----GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG-----------------------------CAGAG----GCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGG
s HiC_scaffold_1 138967950 2369 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGT--AGCTCTAGTC-------ATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAA-CATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAAT-------CTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG---------AACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGG

a score=26720
s chr3            93325768 2408 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGATGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGG------------TCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTC---ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATGTGGCGCCTCATCAGGAC--AGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGC---------------------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCA--AGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCA
s HiC_scaffold_1 138968112 2261 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCT---------CAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCT-TAGGACA--------------------------------------ACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC---CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTC-----------AGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCT---------------------------------------AACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=35058
s chr3            93325793 2571 + 160039680 GCTATGATGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---------TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATC-----TCAAC---GGTTTGGATCTGGC---------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138967888 2478 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC-------CGACACAGAACT--------GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT----------------------------------------------------------------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAA---------------------------------------------------------------TCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=7222
s chr3            93325855 485 + 160039680 TCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGG
s HiC_scaffold_1 138968391 497 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG

a score=29713
s chr3            93325927 2707 + 160039680 TCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCT---GCCAGCTCTGGTC---AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGG---TGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGA-----CAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG-------TCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138967953 2455 - 233722169 TCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAG---TCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC--------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGG------ATCTGG-CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA---------------------------------------ACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT--------------------------------AACCAAAGG-------CAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGG-ACA--------------------------------------ACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=32970
s chr3            93325990 2696 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGC---TCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138967932 2441 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACC------------------------AACATGGATCA---------------------------------------AACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC------------------------------CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------------------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAGA--GACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTC---CAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTA---------ACTATGGT---------GGATACAGGTCTAGCTC---------------------AGGTCAGTT----------------------GCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=29543
s chr3            93326039 2368 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTT----TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG---TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968110 2260 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCA----GCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA---------------------------------------CAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCA---------------------------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTA---ACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=24997
s chr3            93326137 2450 + 160039680 TCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGACAAACTTCTAGCTCCACTAGACAGGG---TTCTGGAC------AAGGTCAGGC------CTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTG-------------GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTC
s HiC_scaffold_1 138968130 2201 - 233722169 TCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAG------TCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAAGTTATGAACAGTA----TGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGAC------------------------AGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTA----GCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC------------------------------CGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---------------------TAGGTCTAGTTCACAG---------------CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTA-------TGCCTGAACACTATG--AGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCC

a score=42556
s chr3            93326170 2571 + 160039680 GGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGC---------TATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA---------------------ATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138967845 2505 - 233722169 GGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAG---------------------------------------------------------TCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTT---------CATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG------------------------TGGTCAACATGG---------ACCCAACTCA---GCCCAA---------------------------TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=12880
s chr3            93326284 1018 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT
s HiC_scaffold_1 138968121  964 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCA------------TGAATCCACCTCA---ACAAGTTATGAACA------------GTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCAT---------GCAGTTATGGT------------------------------GAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCT

a score=10201
s chr3            93326299 1341 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGG----------AGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTC---TGGACA------------------------GCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGC---------TCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT----------GGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCA---------------------GGTCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGG-ACAGAC--ATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCT
s HiC_scaffold_1 138967950 1386 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT----ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCT---AGTCAGAAATACCATGAATCCACCTCAACA---------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATCAGTCTGGTTCAAGTTCATCTCCTAG---CAGTGGTCAGTATGGCCGACA----CAGAA--CTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCA-TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGG------ATCTGGCATAGACCAATCCTGTAGCAATGGGCA---------------ACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTT

a score=13055
s chr3            93326308 1684 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTC------AGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCAAAAT---GAATATGGCT----CAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCT---------TCCAGCTAT-------GGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTT----CAGGTTTAGGTCAATATG--GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATATGGTGCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGAT
s HiC_scaffold_1 138968739 1642 - 233722169 TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTAT------GGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC-----------AGGCTTAGATCAATCT----------TCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTC-------TAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAA-------TCAAATCAG----------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA--ACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG--AACACTATGAG-TATGGTTC------ATGTCCTTCATCTGTCTCTGGACAATGTGGTTC------------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---ACAAGGAGGAt

a score=30766
s chr3            93326324 2479 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGG--TTTGGGTCATT-------ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT------------GGTGCCTC------------------------------------ATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGC---------TATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138967888 2482 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCT------AGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA-----------------------------ATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCT--------------CAAAGTTCAGCCATTCTAG------GTCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTC------------------TGCCTT---------------------TGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=37386
s chr3            93326524 2396 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACA-----------ACAGGGTTCG------------TTCTCTGGACAGAC-ATCAGGTAGA---AGTCAGCATCAATCTGGCTCCAGGCATGG---------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138967932 2438 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGC---ACATGGGCA---TTCAGGAAGTTGTGAAAATCAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCA---------------------------------------TAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=27910
s chr3            93326533 1916 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGG---------ATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATATGGTGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA-GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATC
s HiC_scaffold_1 138968127 1919 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCAT------------------GGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCT---AGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCT-------------------------ATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--TCATGCTG-------TGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC

a score=15488
s chr3            93326668 1727 + 160039680 CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC---------------TCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT------------GGTGCCTCATCAGGACAGACTTCAGGCTG-------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAA--GGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAG-TGGAGTCA----CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGG---ATCACGTAACTC--ATCTACCCAAAGCAGAGGCAGGTC---TACCTCA--AGGG--------------AGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138968271 1706 - 233722169 CATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAG---------TATGGGTCAGGG---------------TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATC-TCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT------TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATC---TAGGTTTGGGCA---------------ACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAG-------ACACCAAGCTATAGCCAACAGCGGTT-TGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAG---------------TCACCATAG---GTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAG--CCAACACGGGTG------------TGAATCAAATCAG-TCT--------TCTGCCTT-------TGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--------TCA-TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtag

a score=27880
s chr3            93326675 2202 + 160039680 CTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG---TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGAC-----AACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGT---GGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAG----------GGTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------------CTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG--TTCTGGCACAC-ATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTG
s HiC_scaffold_1 138968155 2211 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------TTTTTCTAGGCAAAAATATAAATCCAGT---GCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAG--CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCT------AGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAG---CAATGGGCA---------ACACAGTTCAGCTTCAGGA----------GAGACACCAAGCTATAGCCAACAGCGG--TTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATA------TATC------------------TGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT------------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGT---GGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=40976
s chr3            93326681 2573 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACA----TCTCAAC---GGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138967843 2507 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT------------------------------GTGGTA---------CAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCC---------------------------TTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=30517
s chr3            93326783 2364 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTC---------------TGGGTCA------------------GGACGATGTGGCGCCTCATCAGGACAGACTTCA---------------GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138968113 2295 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAG-----TTGTT----------------GTTCTAGTCATAGCCAA----------------------------CAT--------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=26663
s chr3            93326812 2387 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGG------------TCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTC---ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATGTGGCGCCTCATCAGGAC--AGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGC---------------------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCA--AGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138968112 2261 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCT---------CAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCT-TAGGACA--------------------------------------ACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC---CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTC-----------AGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=13507
s chr3            93326817 1417 + 160039680 TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC
s HiC_scaffold_1 138968813 1198 - 233722169 TGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---------------------------------------GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCA---------------------------------------CAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TC------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGC

a score=5431
s chr3            93326818 449 + 160039680 GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAAC------TCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAG
s HiC_scaffold_1 138968388 446 - 233722169 GGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCA------ACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAG

a score=33480
s chr3            93326837 2596 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---------TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138967888 2482 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT----------------------------------------------------------------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAA---------------------------------------------------------------TCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=14520
s chr3            93326899 1927 + 160039680 TCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGC---------TATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG---------GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------TGTGGG------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAA---TATGGCTCAGGTCATTCTGCCAGCTCTGG-TCAGCAGGG--CTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAG-AGGGGACATGGCTCTCGTTCTGGACGATCTTCAGG-------TTTAGGTCAATATGGATCCCCTTCAG--------GACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAG---GCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCA-GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGG------------------TTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTG--GCTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCT
s HiC_scaffold_1 138968391 1963 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT---TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGT------------------------GTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGC------------ACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTG--TGGTCAGCATGGATCCAACTCAGGTCAGT--------CTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAAT---CAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCC-------TGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCA--------ATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAA---TATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTT

a score=19723
s chr3            93326967 2349 + 160039680 TAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCA-------------------GCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGT----------GGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG---------------------TCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138968111 2259 - 233722169 TGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAA-CATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCAT-TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACAC---------------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=26834
s chr3            93326971 2762 + 160039680 TCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCT---GCCAGCTCTGGTC---AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGG---TGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGA-----CAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG-------TCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCA
s HiC_scaffold_1 138967953 2420 - 233722169 TCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAG---TCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC--------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGG------ATCTGG-CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA---------------------------------------ACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCAT---------GCTGTGG----------TCA-----------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCT---------------------------------------AACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=26678
s chr3            93327034 2387 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138967932 2162 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC------------------------------CGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---------------------TAGGTCTAGTTCACAG---------------CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGG

a score=11871
s chr3            93327040 824 + 160039680 CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138969363 731 - 233722169 CAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGG

a score=28292
s chr3            93327083 2530 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG---TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138968110 2260 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA---------------------------------------CAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCA---------------------------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTA---ACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAG---------------------------------------TTCCAGAAGAGTCATCTGGTTTtagtca------------------gcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAG-----TTGTT----------------GTTCTAGTCATAGCCAA----------------------------CAT--------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=18163
s chr3            93327181 1645 + 160039680 TCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGACAAACTTCTAGCTCCACTAGACAGGG---TTCTGGAC------AAGGTCAGGC------CTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCT
s HiC_scaffold_1 138968130 1540 - 233722169 TCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAG------TCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAAGTTATGAACAGTA----TGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCT

a score=41367
s chr3            93327214 2564 + 160039680 GGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGC---------TATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCT------------TCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAG
s HiC_scaffold_1 138967845 2534 - 233722169 GGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC------------------GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAG------CATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT------------------------------GTGGTA---------CAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCCTTCATCTGTCTCTGG------------------ACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACAAGGAGG

a score=19394
s chr3            93327328 1635 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATATGGTGCCTCATCAGGA--CAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAG-----ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCT
s HiC_scaffold_1 138968121 1545 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCA------------TGAATCCACCTCA---ACAAGTTATGAACA------------GTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCAT---------GCAGTTATGGT------------------------------GAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAG--AGACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAA---TCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACAC------------------------GGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCT

a score=13458
s chr3            93327343 1797 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGG----------AGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTC---TGGACA------------------------GCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGC---------TCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT----------GGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG---------------------TCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGG-ACAGAC--ATCAGGTAGAAGTCAGCATCA--ATCTGGCTCCAGGCATGG-ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAG---GGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAA---CTCAGGGTCAAGCCAGTCT---TCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCT---TCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCT
s HiC_scaffold_1 138967950 1815 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT----ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCT---AGTCAGAAATACCATGAATCCACCTCAACA---------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCAT-TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGG------ATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCA---------------ACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCC--TCAGCACAGTC----TTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCT---TCCA--------------GCTATAGTCAC----CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT

a score=13186
s chr3            93327352 1684 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTC------AGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCAAAAT---GAATATGGCT----CAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCT---------TCCAGCTAT-------GGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTT----CAGGTTTAGGTCAATATG--GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATATGGTGCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGAT
s HiC_scaffold_1 138968739 1642 - 233722169 TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTAT------GGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC-----------AGGCTTAGATCAATCT----------TCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTC-------TAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAA-------TCAAATCAG----------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA--ACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG--AACACTATGAG-TATGGTTC------ATGTCCTTCATCTGTCTCTGGACAATGTGGTTC------------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---ACAAGGAGGAt

a score=38566
s chr3            93327368 2553 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGG--TTTGGGTCATT-------ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATG---------GATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138967888 2478 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCT------AGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA-----------------------------ATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTC------------------------TGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG------------------------CCAACACAGA------TCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCT---------------------AGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGC------CATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=40212
s chr3            93327568 2730 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACAT---CTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA---------------------ATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138967932 2418 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGC---ACATGGGCA---TTCAGGAAGTTGTGAAAATCAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAG---TCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTG------------------------TGACCAACATGGATCA---------------------------------------AACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC----------------------------GACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCT--------------------------------CAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGG---------------------------------------TTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC------------------GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAG------CATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATC------------------------------ATCATGCTGTGGTCAGC------------------ATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG------------------------TGGTCAACATGG---------ACCCAACTCA---GCCCAA---------------------------TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=30891
s chr3            93327577 2231 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGG---------ATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATATGGTGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGC---------TCCAG------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTC
s HiC_scaffold_1 138968127 2243 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATA---------------------GTCA---CCATAGGTC---------------------------------------TGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG---------AACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=26064
s chr3            93327712 2135 + 160039680 CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC---------------TCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTAT-----------------------GGCAC-------------ACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT---CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATC
s HiC_scaffold_1 138968271 2099 - 233722169 CATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAG---------TATGGGTCAGGG---------------TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACAT--------------------------CAGTCAA-------------GTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCT--------------CAAAGTTCAGCCATTCTAG------GTCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGG----------------CTTTGTTCAA--CAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGT---------------TCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=30281
s chr3            93327719 2472 + 160039680 CTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG---TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138968155 2253 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------TTTTTCTAGGCAAAAATATAAATCCAGT---GCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGAC------------------------AGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------------------------------------TCAGTATGGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCA--CAATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACAT------------------------GGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTC---GCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT--------------------------------AACCAAAGG-------CAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGG-ACA--------------------------------------ACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=30625
s chr3            93327725 2709 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGG----TTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATC---AATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG--TTCTGGCACAC-ATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTG
s HiC_scaffold_1 138967843 2523 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACAT------------------GGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCT---------------------------------------GGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC------------------------------AACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------AAAGTTCAGCCATTCTAGG------TCAAGT---------CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--------TCA-TCATCATGCTGTGG----------TCAG-----------------------------CATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCT----------TTAGTCAAC--------ATGAGTCAGTTCCAGAA------GAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGG------------------ATGTGGTACAAATCAGCCTTCCAACTCTGGCC---AATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT------------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGT---GGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=30229
s chr3            93327827 2533 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGC---------TCCAG------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138968113 2257 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTAT---------------------------------------------------------------------------------AGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATG------TGTCTGGATC------------AAACCAGTCT---TCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCA------------------------------TGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGT---------------------AGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAG---------------------------------------TCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--TCATGCTG-------TGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC------ATGCTGTGG----------TCAA-----------------------CATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=20405
s chr3            93327856 1913 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGG----CTTTAGTCAAGG---TGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAG----TCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACT---TCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------TGTGGG------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTC
s HiC_scaffold_1 138967950 1814 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGG---------------------------------------CTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCA------------------GCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAG---CAGTGGTCAG---CATGGCCAA---CACAGATCTGGATCAAGCCAAT-------CTTCTAGGCACAGGCGATATCAGTC--TGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATG------------------------------GCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCA-----AAG----------------TTCAGCCAT---TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC

a score=17449
s chr3            93327856 2527 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------GGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAA--GGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAG-TGGAGTCA----CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCA---AAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGA---TCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTG--GCTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCT
s HiC_scaffold_1 138968112 2242 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCT---------CAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCT-TAGGACA--------------------------------------ACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCAT------------------GTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCAT-------GGCCAA--------------------------CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTAT---------------------------GGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG---------------CGATATAGT-----AGGTCTAGT-TCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCAT------TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATC---TAGGTTTGGGCA---------------ACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAG-------ACACCAAGCTATAGCCAACAGCGGTT-TGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTC---------------------TTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT-----------TCATCA----TCATGCTGTGGTCAG---------CATGG---ATCCAACTCAGGT------CAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGA------GTCAG-------TTC-----------CAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC---------ATGCTGTGG-------TCAACA--------TGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCA--------ATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAA---TATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTT

a score=27731
s chr3            93327881 2334 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAG----ACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGT---GGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAG----------GGTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGT
s HiC_scaffold_1 138967888 2250 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGAC------------------------AACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACA---------------------------------TCAG------------------------TCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCT------AATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTG---TGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATC----------CACAATCAA------------CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCT------AGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGC---AATGGGCA---------ACACAGTTCAGCTTCAGGA----------GAGACACCAAGCTATAGCCAACAGCGG--TTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATA------TATC------------------TGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT

a score=22053
s chr3            93327943 2021 + 160039680 TCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCT-------------GGCTCAGGAGA-ATC-TTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA------TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAGGAC-GATGTGGC-----------GCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968391 1979 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATG-TGTCT-----------------------GGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGT---TCATCTCCT---AGCAGTGGTCAGCATGGCCAA------------------CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCT---CCTAGCAGTGGTCAGT------ATGGCCGACA-CAGAACTGGATC--------------------AAGCCAATCT---TCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC------AAAGTTCAGCCA---TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGG----------------TCAGCATGGA--------TCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCAT------------------AGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=15824
s chr3            93328007 2586 + 160039680 AAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCT---GCCAGCTCTGGTC---AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGG---TGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGA-----CAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCT-------------GGCTCAGGAGG-ATC-TTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA------TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCAAAAT---GAATATGGCT----CAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCT---------TCCAGCTAT-------GGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTT----CAGGTTTAGGTCAATATG--GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATATGGTGCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGAT
s HiC_scaffold_1 138967945 2436 - 233722169 AATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAG---TCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC--------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGA------------------TCTGGCTGTAG------TCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAAGTTATGAACAGTA----TGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGT---TCATCTCCT---AGCAGTGGTCAGCATGGCCAA------------------CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCT---CCTAGCAGTGGTCAGT------ATGGCCGACA-CAGAACTGGATC--------------------AAGCCAATCT---TCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC------AAAGTTCAGCCA---TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGG----------------TCAGCATGGA--------TCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC-----------AGGCTTAGATCAATCT----------TCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTC-------TAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAA-------TCAAATCAG----------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA--ACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG--AACACTATGAG-TATGGTTC------ATGTCCTTCATCTGTCTCTGGACAATGTGGTTC------------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---ACAAGGAGGAt

a score=30973
s chr3            93328078 2579 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTC
s HiC_scaffold_1 138967932 2438 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------------------------------------TCAGTATGGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAG-----TTGTT----------------GTTCTAGTCATAGCCAA----------------------------CAT--------------GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=12823
s chr3            93328084 1152 + 160039680 CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAA----AGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA--CATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCA
s HiC_scaffold_1 138969363 1008 - 233722169 CAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGG---------------TCAATATGG---ATGTGGTAC----------AAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAA--CATGGATATGCCTCAAG-------TATGCCTGAA--CACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTC---------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=37176
s chr3            93328127 2350 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGG---------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968110 2260 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA--ATACCATGAATCC---------ACCTCA---------------------ACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCT------------------GGTTCAAGTTCA------TCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCT---------------------AGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCA---------------------------------------TAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=40321
s chr3            93328258 2564 + 160039680 GGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCT------------TCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAG
s HiC_scaffold_1 138967845 2534 - 233722169 GGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGAT------------------------------GTGGTA---------CAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATG---AGTATGGTTCATGTCCTTCATCTGTCTCTGG------------------ACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACAAGGAGG

a score=29129
s chr3            93328372 2405 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCT-----------GGCTCCAGGC----------ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGC---------------------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCA--AGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCA
s HiC_scaffold_1 138968121 2252 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTC------AAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAG----------------TCAGCATGGA--------TCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------------------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTC-----------AGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCT---------------------------------------AACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=19450
s chr3            93328387 2078 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGT---------GGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA------------GGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGG------------TCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTC---ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG----GTCAGGTCAGTCCACTCGCTATGG---TGAACAAGGTTCAGGATCACGTAACTCAT-----CTACCCAAAGCAGAG--GCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCT----CAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138968112 1982 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAG----------GCCACATCAG--------TCAAGTT------CAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAA---TTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATG------TGTCTGGATC------------AAACCAGTCT---TCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC---CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTC-TTCTGGCTTTGGTCAATAT---GGATC---TGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTT--TGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGG

a score=34207
s chr3            93328412 2553 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT-----------TCCACCCAGTG----------------GAGT---------------CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC---------------TCCAC------------TAGACAG---GGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---------TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATC-----TCAAC---GGTTTGGATCTGGC---------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA------CTCA------------------------GGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATG
s HiC_scaffold_1 138967888 2478 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC-------CGACACAGAACT--------GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT----------------------------------------------------------------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAA---------------------------------------------------------------TCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=18509
s chr3            93328467 1776 + 160039680 GTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAG--GGTCAAGC---CAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138968810 1563 - 233722169 GTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT-------------------------------AGGCAC--------AGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGT---------ATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAG-----GCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCA---GCCA---TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGG------ATC------------------TGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATG------------------TGTCTGGTTCAAATCAGTCT---TCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCT---AACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGG---------------------------------------GTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=31417
s chr3            93328612 2675 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG------------------------------TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTG-------------GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCA
s HiC_scaffold_1 138967932 2441 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTA----GCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC------------------------------CGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---------------------TAGGTCTAGTTCACAG---------------CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGG------------------ATCTGATTTATGT---TACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCACA

a score=19448
s chr3            93328621 2180 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT-----------------TCTGGACAA---------------GGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCA-------------------GCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA----GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG-----------------------------CAGAG----GCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGG
s HiC_scaffold_1 138968127 2192 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAA-CATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAAT-------CTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG---------AACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGG

a score=29204
s chr3            93328690 2545 + 160039680 GGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCA---CATCAGGACAAACTGCTAGCTCCACTAG------ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGG---TGCCTCA--------------TCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA
s HiC_scaffold_1 138968124 2284 - 233722169 GGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCT---AGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAG---GCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA---------------------------------------ACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT--------------------------------AACCAAAGG-------CAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGG-ACA--------------------------------------ACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT--GGATATGCCTCAAGTATGCCTGAACACTA---TGAGTATGGT------TCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC---------ACAAGGAGGAtgtggaaaccagtggaaatctAGAACCA

a score=42283
s chr3            93328769 2573 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGC---------TATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA---------------------ATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT
s HiC_scaffold_1 138967843 2507 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC------------------GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAG------CATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTT----------------------GCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATC------------------------------ATCATGCTGTGGTCAGC------------------ATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG------------------------TGGTCAACATGG---------ACCCAACTCA---GCCCAA---------------------------TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACA------------TGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCT

a score=26728
s chr3            93328796 2212 + 160039680 ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTT----TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAG------GGGACATGGCTC------------------------TCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138968272 2098 - 233722169 ATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCA----GCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA---------------------------------------CAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCA---------------------------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=25358
s chr3            93328900 2424 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------GGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCA------------GGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATATGGTGCCTCATCAGGA--CAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAG-----ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAA-GGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAG---GTAGATCTGGGCAAGGTCGATCTTC-TCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA--CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCA
s HiC_scaffold_1 138968112 2259 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCAT---------GCAGTTATGGT------------------------------GAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAG--AGACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAA---TCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACAC------------------------GGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCT----------------GGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGA---TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCAT----------------------------------GCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCC------------------------AACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAA--CATGGATATGCCTCAAG-------TATGCCTGAA--CACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTC---------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=10232
s chr3            93328900 1293 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGG----CTTTAGTCAAGG---TGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTC---TGGACA------------------------GCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGC---------TCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT----------GGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCA---------------------GGTCAGTCCACTC-----GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGG-ACAGAC--ATCAGGTAGAAGTCAGCA--TCAATCTGGCTCCAGG
s HiC_scaffold_1 138967950 1355 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCT---AGTCAGAAATACCATGAATCCACCTCAACA---------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATCAGTCTGGTTCAAGTTCATCTCCTAG---CAGTGGTCAGTATGGCCGACA----CAGAA--CTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC-----CTCAAAGTTCAGCCA-TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGG------ATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGG

a score=4691
s chr3            93328909 191 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTC
s HiC_scaffold_1 138969300 191 - 233722169 TCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTC

a score=30834
s chr3            93328925 2479 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGG--TTTGGGTCATT-------ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG---------GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAA---GGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAG----ACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGT---GGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCT---CGTGGTGGACAGCAG----------GGTTCCTTCTCTGGACAGA------------CAGAAGGCAGTCAA---------------CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTG-----GGTC----------------------------------AGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTC
s HiC_scaffold_1 138967888 2482 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCT------AGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA-----------------------------ATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATC----------CACAATCAA------------CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCT------AGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAG---CAATGGGCA---------ACACAGTTCAGCTTCAGGA----------GAGACACCAAGCTATAGCCAACAGCGG--TTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-CAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGT---GGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=11787
s chr3            93328986 1294 + 160039680 CTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAG-----ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAA-GGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGG---TAGATCTGGGCAAGGTCGATCTTC-TCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATA------ACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA--CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCA
s HiC_scaffold_1 138969221 1150 - 233722169 CTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAGA--GACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTC---CAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGG------------------------TGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCT----------------GGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCT---GGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATG----------------------------------CTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAA------CTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCC------------------------AACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAA--CATGGATATGCCTCAAG-------TATGCCTGAA--CACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTC---------------------TAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATCA

a score=19080
s chr3            93328987 1848 + 160039680 TCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC
s HiC_scaffold_1 138968391 1620 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---------------------------------------GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCA---------------------------------------CAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TC------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGC

a score=37733
s chr3            93329125 2396 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACA-----------ACAGGGTTCG------------TTCTCTGGACAGAC-ATCAGGTAGA---AGTCAGCATCAATCTGGCTCCAGGCATGG---------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCA------------------------------TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------CTCCAG---------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTC
s HiC_scaffold_1 138967932 2438 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGC---ACATGGGCA---TTCAGGAAGTTGTGAAAATCAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCA---------------------------------------TAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA----AGTATGCCTGAACAC--------TATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=27344
s chr3            93329134 1916 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGG---------ATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG-----GTCAG----GACGATATGGTGCCTCATCAGGACAGACTTC-------AGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATG--GATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGC---------TCCAG------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCA------------------------------GCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATC
s HiC_scaffold_1 138968127 1919 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTC--------CTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAA---------------------------------------CAGGGGTCTGGCTC---------AGAAG------------------------------AGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttc------------------------tggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATC

a score=20564
s chr3            93329269 1680 + 160039680 CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC---------------TCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTC--------TCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGG---------------------CATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAG-TGGAGTCA----CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCT
s HiC_scaffold_1 138968271 1620 - 233722169 CATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAG---------TATGGGTCAGGG---------------TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAG-------ACACCAAGCTATAGCCAACAGCGGTT-TGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGC---------------------------------------CAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTC------------------TGCCTT---------------------TGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT

a score=15128
s chr3            93329276 2202 + 160039680 CTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG---TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGAC-----AACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC----CAGGCATGGATCTG-GCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCC-ACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTT-TGGGTCATTATGGTTCCACA-------TCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGA----CAGACTTCAG---GCTGTGGGTCAGGTCAGTCCACTCGCTATG--GTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTAC--CTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTC---------------TGGACA---------------AGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGG------------------CTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG--TTCTGGCACAC-ATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTG
s HiC_scaffold_1 138968155 2211 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------TTTTTCTAGGCAAAAATATAAATCCAGT---GCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAG--CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAA--CCTGGTCAGTC---CTCAAAGTTCAGCCATTCT---AGGTCAAGT---CATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCA----TCTAGGTTTGGGCAA---CATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGAT--CTGGC----ATAGACCAATCCTGTAGCAA-----------TGGGC---AACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAA----------CATGTGTCTGGT----TCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGA---TCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTC------TGGTTTAGGTCAATCTTCTAACTATGG-TGGATACA-----------------GGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGAT------------ATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGT---GGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATG

a score=41372
s chr3            93329282 2563 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACA----TCTCAAC---GGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------TCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCA---TCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCC---------ACTCGCTATGG---TGAAC-------------AAGGTTCAG--------GATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGC---AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTC---CCAACACG---ATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACA
s HiC_scaffold_1 138967843 2530 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCT------------------GGTTTAGGTCAAT---------------------CTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCA----------------------GTTGCCTCGCCAGGGCCAATGT--GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCAT---------CATCATGCTGTGGTCA------------------GCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCT---AACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAG---------------TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTT------------------ATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACA------TGAATCACA

a score=29355
s chr3            93329384 2181 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTC---------------TGGGTCA------------------GGACGATGTGGCGCCTCATCAGGACAGACTTCA---------------GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCT---CAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCAT-CTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCA------------------ATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTC----TCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGC------CTCTGGGTCAGGACGATGTGGCGCCTC---ATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTA
s HiC_scaffold_1 138968113 2199 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGC---GGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCA----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCAT----GCTGTGGTCAACATGGACCCAACTCAGCCCAA---TCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAA---TGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTA

a score=26736
s chr3            93329413 2327 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAA---CTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGG------------TCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTC---ACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT-----CTGGGTCAGGACGATGTGGCGCCTCATCAGGAC--AGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGC---------------------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCA--AGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTC------------------TTCATGT----------TCCCAACACGATGT--TTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACC
s HiC_scaffold_1 138968112 2258 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATA---------------------------------------TGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGG---TCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC---CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTG-------------TTCAACAG-----------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTC-----------AGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---------------------------------------------------------CATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcag------catggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------------------------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=12740
s chr3            93329419 1140 + 160039680 GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGG----------TAGAAGTCAG--CATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCT
s HiC_scaffold_1 138968388 1161 - 233722169 GGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG-------CCAACACAGA--------TCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGT---AGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCT

a score=34009
s chr3            93329438 2515 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGT---------TCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATC-----TCAAC---GGTTTGGATCTGGC---------------------------TCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTCAGGTC------AGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAA------------GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATC
s HiC_scaffold_1 138967888 2482 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC-------CGACACAGAACT--------GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGG---------------------------------------CTCAGAAGAGTCTTTTGGTTTTAGTCA------------------GCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT--TCATCATCAT-------GCTGTGGTCAGCATGGATCCAACTCAGGTCAG---TCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCA---------------------------------------ACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTA--------------------------------CTCA-------TCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=4097
s chr3            93329490 301 + 160039680 CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGC
s HiC_scaffold_1 138969719 292 - 233722169 CAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---TCA------TCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGC

a score=7447
s chr3            93329500 485 + 160039680 TCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGG
s HiC_scaffold_1 138968391 497 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGG

a score=19545
s chr3            93329568 2307 + 160039680 TAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCA-------------------GCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACC---CAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCA----GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG-----------------------------CAGAG----GCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGG----CTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGG------------TCTACCTCAAGG------GAGTCTTCTACATCTCAAAGGTATGGATCTGGCT--CAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACA-----GTTTCCCAT-------CTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGT---------TCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTC
s HiC_scaffold_1 138968111 2259 - 233722169 TGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAA-CATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAGTATGGCCGACA----CAGAACT--GGATCAAGCCAAT-------CTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAA---------TCTTCTAACTATGG---TGGATA----CAGG--TCTAGCTCAGG----------------TCAGTTGCCTCGCCAGGGCCAATGTGGGTCTG---AATCCAGTCAATCTT-----CAAGGTTTAG-------------------CCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGG-----TCTGGCTC---------------------AGAAGAGTCTTTTGGTTTTAGTCAGCACAG---------------------------------------ATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCT------------GGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAG---TATGGTTCATGTCCT------TCATCTGTCTCTGGACAATGTGGTTCTAGATCTGG------------------TCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=32577
s chr3            93329572 2572 + 160039680 TCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCT---GCCAGCTCTGGTC---AGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGG---TGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGA-----CAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGG-------TCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGG---------ATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAA---GGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTC---------------------------------TTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGAT
s HiC_scaffold_1 138967953 2416 - 233722169 TCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGA---GTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC--------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGG------ATCTGG-CTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAG------------------TTCAG---------------------CTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGC---------------------------------------------------------------TCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGG---------------------------------------------------TGGATACAGG------TCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGA---GAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTA----------TGGTCAAC-----------------------------ATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAA------------------TATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAAT

a score=34767
s chr3            93329635 2666 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTG-------------GATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTT-GTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTAC---TTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTC
s HiC_scaffold_1 138967932 2438 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTA----GCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGC------------------------------CGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---------------------TAGGTCTAGTTCACAG---------------CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTC------AAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGC---------------TTTGGCC---AGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG----------------------------------------GTGGA--TACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA----------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGG-----GTCTGAATCAAA-------------TCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTGAACACTATGAGTATGGTTCATGTCCTTCA---------TCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=23458
s chr3            93329680 2660 + 160039680 CAAAATGAATATGGCTC------AGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC----AGGTTTAGGTC---AATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-AGGC-----TGTGGGTCAGGT---------CAGTCCACTCGCTATGGTGAACAAG------GTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGC---TCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAG-----ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAA-GGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGG------AGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCA----GGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCA-TATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAG---------CAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGT--ATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATG-TTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGC------CCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTC
s HiC_scaffold_1 138967938 2432 - 233722169 CAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTC-ATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAG---TCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACAT------------------GGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTC------AAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAG----------------TCAGCATGGA--------TCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGC------------------------------CAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------------------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAA------------CACAGTTCAGCTTCAGGAGA--GACACCAAGCTATAGCC----AACAGCGGTTTGGCTCAAGTCACTCT---TCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTC---CAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAG-----TTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGG------------------------TGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCT----------------GGCTTTGTTCAACAGGGGTCTG-----GCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGA----TCTGGCTTAGGTCA--ATCA-CCTAGTTATGGACAACATGGTTCTTCATCAT----CATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCA----------GCTATGGTCAG-CAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGT--------------CAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCA------ACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAA--GAGTCATCTGGTTTtagtc----agcatggttctggctTAGGT----------------CAA--TATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGT-AT-------GCCTGAA-CACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATAT------GGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=31188
s chr3            93329684 2383 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTT----TGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCA---GTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATC
s HiC_scaffold_1 138968110 2260 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCA----GCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC----AAAGTTCAGCCA--TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAG---------------------------------------------------------GGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGG------------------TTCTTC---------------------------------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAA---------------------------------------------------------------TCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCC------------------AACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTC----AAGTATGC-----CTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=28168
s chr3            93329775 2448 + 160039680 AAGCCCGTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCC------------CCTTCAGGACAAACTTCTAGCTCCACTAGACAGGG---TTCTGGAC------AAGGTCAGGC------CTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAG---TCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTC
s HiC_scaffold_1 138968123 2247 - 233722169 AGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAG------TCAACCTCCTAGTCAGAAATACCATGAATC-----CACCTCAACAAGTTATGAACAGTA----TGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCAT------GCAGTTATGGTGAA------------CAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAA------CAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTA---TAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCT-------------------------------AGGCA-----CAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCC------ATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCT------------------------ATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCAC---------------------------------------------------------CATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTT----------------TTAGTCAGCACAGA--------TCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------------------------------------------------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACT------------------TCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAATC

a score=77099
s chr3            93329815 3922 + 160039680 [encoded data, 4219 characters]
s HiC_scaffold_1 138967845 3863 - 233722169 [encoded data, 4219 characters]

a score=12880
s chr3            93329929 1018 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGC---------TCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGC---------CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATA---TGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCT
s HiC_scaffold_1 138968121  964 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCA------------TGAATCCACCTCA---ACAAGTTATGAACA------------GTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGC-CACAGTCAA--CACAGGTCTGGTTTAGGTCAGTCAT---------GCAGTTATGGT------------------------------GAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGT---TCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCT

a score=9296
s chr3            93329944  969 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGG----------AGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTC---TGGACA------------------------GCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGC---------TCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGC
s HiC_scaffold_1 138967950 1011 - 233722169 GGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT----ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCT---AGTCAGAAATACCATGAATCCACCTCAACA---------AGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTC---TAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGG-CGATATCAGTCTGGTTCAAGTTCATCTCCTAGC

a score=15740
s chr3            93329950 2154 + 160039680 GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGG--------------CGCCTC---------ATCAGGACAGACTTCA-GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGT---TTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGAC---AGAAGGCAGTCA---------ACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTC---AAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGG-TCAGCAGGG--CTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGC-----CCCTCTTCCAGC--CAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG----TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCT------CAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTC---AGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGA
s HiC_scaffold_1 138968388 1980 - 233722169 GGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGG------------------ATCTGGATCAGGCCAGTAT---TCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCT------AATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTG---TGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATAT---GGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATG---GTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCAT---GGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACAC----------------------CAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT----TGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCT---------------------GCCTTTGAG------------------------------------AAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGG---------------------------------------------------------------------------------GTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA--TCATGCTGT--GGTCAGCA-----TGGATCCAACTCAGGTCAGTCTTCCAGCTATGG-TCAGCAAGGGTC-----------TGAATCAAATCAGTCATCTGGCTA-TGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGG--------------CAACATGG-GTCTTA--CTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTC------------------AATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCA--AGTATG-------CCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAA

a score=12769
s chr3            93329953 1541 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCT---------GTGGGTC------AGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCT---TCTGGGTATGGTCAAAAT---GAATATGGCT----CAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCT---------TCCAGCTAT-------GGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTT----CAGGTTTAGGTCAATATG--GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATATGGTGCCTCATCA-GGACAGACT------------TCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTA---TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACA
s HiC_scaffold_1 138968739 1526 - 233722169 TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTAT------GGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC-----------AGGCTTAGATCAATCT----------TCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTC-------TAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAA-------TCAAATCAG----------TCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCA--ACAGGGGTCTGGCTCAG---AAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAA---CCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttct------------------ggctTAGGTCAATAT---TCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAAT------ATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCTG--AACACTATGAG-TATGGTTC------ATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCA

a score=32429
s chr3            93329969 2400 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGG--TTTGGGTCATT-------ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAG---ACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT------------GGTGCCTC------------------------------------ATCAGGACAGACTTC-AGGC--------------TGTGGGTCAGGTCAGTCCACTCGC---------TATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAA------------------------------------------------------------------------TCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGC---------TCCAG------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTC---TTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCC--TATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTAC------TTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAAC
s HiC_scaffold_1 138967888 2433 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCT------AGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA-----------------------------ATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAA---TATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATA---GACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTT---GTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAAT------ATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATA-----------CAGGTC-------------TAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTT---------------------------CATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATG-----------AGTCAGT--------------------TCCAGAAG-----AGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCCT--------------GAACACTAT---GAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGC

a score=38773
s chr3            93330169 2202 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTG---------------GGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA-----------CATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACA-----------ACAGGGTTCG------------TTCTCTGGACAGAC-ATCAGGTAGA---AGTCAGCATCAATCTGGCTCCAGGCATG---------GATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGG---------------------------------------CAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGA------------------CCTTGTTTTGGTCAAACTGAA---GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTC---------------------TTTTCC---------CTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGA---GCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAA
s HiC_scaffold_1 138967932 2352 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGC---ACATGGGCA---TTCAGGAAGTTGTGAAAATCAAAC---------------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGAC---ATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAA--CACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCT---TCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGC------CATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAAT------ATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACAT------GGATATGCCTCAAG---TATGCCTGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAA

a score=13863
s chr3            93330178 1059 + 160039680 CAATCTGGCTCCAGGCATGGAT---------CTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAG------------------------------TTCTGGCA---------------CACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATG---------GATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTG-----GGTCA----GGACGATATGGTGCCTCATCAGGACAGACTT-------CAGGCT-----GTGGGTCAGGT------CAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG-----------------------------CAGAG----GCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGG-ACAGAC--ATCAGGTAGAAGTCAGCA--TCAATCTGGCTCCAGG
s HiC_scaffold_1 138968127 1178 - 233722169 CAATCT---TCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCT---AACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGG------ATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGG

a score=8420
s chr3            93330313 806 + 160039680 CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC---------------TCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTAT-----------------------GGCAC-------------ACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTC-AGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGT---------TCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATAT------------GGTGCCTCATCAGGACAGACTTCAGGCTG-------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAA--GGTATGGATCTGGCTCAGG
s HiC_scaffold_1 138968271 845 - 233722169 CATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAG---------TATGGGTCAGGG---------------TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACAT--------------------------CAGTCAA-------------GTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGG-CAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATC-TCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTC--CTACATCCACAATCAACATGGATTTGAACCTGG

a score=21645
s chr3            93330320 1603 + 160039680 CTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG---TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACC---------CAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTG---------GATCTGGGCAAGGTCGATCTTCTCGTGGTGGAC-----AACAGGGTTCGTTCTC-------------------TGGACAGACATCAGGTAGAAGTCAGC------------ATCAATCTGGCTCCAGGCATGG---------------------ATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCA-------------GGCC--------TCTGGGTCA------------------GGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACC------------------TTGTTTTGGTCAAACTGAA---GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGG
s HiC_scaffold_1 138968155 1726 - 233722169 CTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------TTTTTCTAGGCAAAAATATAAATCCAGT---GCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCA---------CAGTCAACA---CAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAG------CATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTC---------ATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGG

a score=29537
s chr3            93330326 2046 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACA----TCTCAAC---GGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCC------------TTCTCTGGACAGA---------------------------CAGAAGGC------AGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGA---GGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTT---------TCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTT---TCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138967843 1914 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCA-TCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCT------CCTAGTCAGAAATACCATGAATCCACC---TCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACAT------------------GGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCT---------------------------------------GGATCAAACCAGTCTTCT---AGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC------------------------------AACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGG---------------TCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTC-------CAGCA--ATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC---------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGG--------AAGG----------TCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATC------CTGTAGCAAT---------------------------------GGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAAC

a score=25285
s chr3            93330428 1944 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGC--TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCT------------------------------GGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138968113 1752 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGG------ATC------------------TGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCC---------AACACAGATCTGGATCAAGCCAATCT---TCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCG----------------------------ACACAGAACT--GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC--------------------------------AAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTA---------------GGTTT-------GGG--------------CAACA---TGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTT------------------GGCTCAAGTCACTCTTCTAGCTATGG---------------------------------------CCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTC---------------------------------------AGCACAGTCTTCTGGCTTTGGCCAGCA------TAGATCAGG--------CTTA----------------------GATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAAC

a score=20822
s chr3            93330457 1917 + 160039680 GGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGT---------AGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGC---ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCT---------GGATATGGTCAATAT---TCTAACTTTGAACAACCT
s HiC_scaffold_1 138968112 1698 - 233722169 GGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGG---CAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCT---------CAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCT-TAGGACA--------------------------------------ACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTC------------------AAGTTCAAGA------GAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCA------------------------------TGGCCAACACAGATCTGGATCAAGCCAATCTTCT---AGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCC------------------------------GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGT---------------------AGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA------TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCT------------------GGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTC---------------------------------------TTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCT-----------------TCCTCAGCA-------------------CAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCT

a score=19600
s chr3            93330482 1890 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGA---CAGAAGGCAGTCAAC---AGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTA---------------------------------------------TGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---------------------GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGT----CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACT---TCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCC---CAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCT---CTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAG---TCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138967888 1830 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCA--ACAAGTTATGAACAGTATGGGTCAGGGTC-------AGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGAC------------------------AACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT--GGTTCTTCATCA-GGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCT-------AGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGC---AGTGGTCAG---CATGGCCAA---CACAGATCTGGATCAAGCCAAT-------CTTCTAGGCACAGGCGATATCAGTCTG--GTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGG------------------------------CCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAAT---CAACATGGATTTGAACCTGGTCAGTC-----------CTCAAAGTTCAGCCATTCTAGGTCAAG-------------TCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGG---------------------------------------CTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGC

a score=14831
s chr3            93330544 1209 + 160039680 TCAAGGGAGTCTTCTACATCTCAACGGTTTGGATCTGGCTCAGGAGGATCTTCTGGCTTTAGTCAAGGTAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTA---------------------------------------CATCTCAAAGGTA------------TGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGG----------TAGAAGTCAG--CATCAATCTGGCTCCAGGCA---TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCA-------------------CCCAGTGGAGTCAC------------------GGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTC---CCAACAC-GATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAA
s HiC_scaffold_1 138968391 1347 - 233722169 TCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATT---ATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTT-TGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGT----GAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAA

a score=10181
s chr3            93330612 699 + 160039680 TAGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAGCAGGGTTCCTTCTCTGGACAGACAGAAGGCAGTCAACAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCA---GGTCATTCTGCCAGCTCTGG---TCAG---CAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGC---------------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTC------------------CAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGG
s HiC_scaffold_1 138968111 690 - 233722169 TGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGG---------------------------------------CTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGG

a score=25477
s chr3            93330679 1700 + 160039680 AGTCAACAGCATGGATCTTGTTGCG------GTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACA------TAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGA-------CATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACG---ATATGGTGCCT-----CAT-CAGGA------------CAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAG---GCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGG---------------TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTC-----ATGTTC-------CCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTC---------CTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTC
s HiC_scaffold_1 138967932 1715 - 233722169 AGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGT-------CATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACA------------TGGATCTAGATCAGGCAAATTT---------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCT---AGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGA---TCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG--------TAGGTCTA-------GTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCAT------TCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATC

a score=11871
s chr3            93330685 824 + 160039680 CAGCATGGATCTTGTTGCGGTCAGTCTTCTGGGTATGGTCAAAATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG
s HiC_scaffold_1 138969363 731 - 233722169 CAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGA------ATC------------------TGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGG---------------------------------------GGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTC---------TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAA---CATATATCTGGA-----------TCA----GGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGC-TTTAGTCAA--CATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGG

a score=23859
s chr3            93330728 1644 + 160039680 ATGAATATGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTC---TGGACGATCTTCAGGTTT---AGGTCAA---TATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT---TCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTC-------AGGC--------TGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGT---------TCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTC------------ATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCG---GTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTC---TACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138968110 1569 - 233722169 ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAA---ATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAA--ATACCATGAATCC---------ACCTCA---------------------ACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATAT------------------GGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACAT---GGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACT---GGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAA----AGTTCAGCCATT--------------------CTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGG---------------------------------------TTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAAC

a score=5564
s chr3            93330735 1447 + 160039680 TGGCTCAGGTCATTCTGCCAGCTCTGGTCAGCAGGGCTCTCATTACAGTCAGTCTTCCAGCTATGGCACACATAACTCAGGTGGAAGCCCCTCTTCCAGCCAGAGGGGACATGGCTCTCGTTCTGGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGG---GTCAGGACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATG--GTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTAC--CTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGG---CACACATAACTCAGGGTCAAGCCAGTCTTCTTCCAC-----CCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCT---TCTGGTTTGGGTCA---TTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCC---TCTGGGTCAGGACGATGTGGCGCCTCATCA-GGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAA---GTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGA
s HiC_scaffold_1 138969140 1228 - 233722169 TAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTG---------------------------------------GGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAG---CAATGGGCA---------ACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAG--------------------CCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAA----------CATGTGTCTGGT----TCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGC-CAGCATAG--ATCAGGCTTAGATCAATCT---TCCAGCTATAGTC----------------ACCATAGGTCTGGT--------------TTAGG------------TCAATCT---TCTAACTATGG---TGGAT----ACAGGT--CTAGCTCAGGTCAGTTG---CCTCGCCAGGGCCAATGT---GGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAA--------CACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGT-TCA--ACAGGGGTCTGGCTCA---GAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAAT----CACCTAGTTATGGACAA---------CATGGTTC---TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGT-----CAG--------CAAGGG--------------------------TCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTC------------------AGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATGCCTCAAGTATGCC---------TGAACACTATGAGTATGGTTCATGTCCTTCATCTGTCTCTGGACAATGTGGTTCTAGATCTGGTCATTGTTCTAACTCTCAACAATATGGATCTGATTTATGTTACTCATCTAGCTCTGGGCCATGTGGTCCTAGACCTAGTCAGTGTTCTAGTTTTGAGCAACATGAA

a score=21036
s chr3            93330859 1495 + 160039680 GGACGATCTTCAGGTTTAGGTCAATATGGATCCCCTTCAGGACAAACTTCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATATGGTGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGG-------------TATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCG------------TTCTCTGGACAGACAT------------------------CAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGT---------------TCTGGCACA---------------CATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGG--AGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTC---CCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCT---------------------GGTTT---------------------------TGACCAGCAAAGGTCTGGATTACATCAGTCTTTT---CCCTGTAGTAATCA--------TGAGTCCACCTCTCAAGAGTATTC-------------TAGCTTTGGATCATG---------------------------TGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCT---ACTTATGAGCATCATGAATCTAA------------------------------TAG---AAATCAATCTTCTGGCTATAGACAATATAATACTG-----------------------------CAT----------CAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAAT
s HiC_scaffold_1 138967845 1699 - 233722169 GGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAG-------TCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAAC---------ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATC----AAACTGTGGTCAGT-ATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAG---------TCATGCAGTTATGGTG---------AACAGAGTTCAGGCT------CAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAA---TCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGA-----------TCAAACTCAAG-------TCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGT

a score=21006
s chr3            93330973 1399 + 160039680 TCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGT------------------------------GGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCT-----------GGCTCCAGGC----------ATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCA---CGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTC---------CTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTT------------------TGGTCAA----------ACTGAA--GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTA---CTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACC---AAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTG----GGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138968121 1480 - 233722169 TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATC--AAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTC------AAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAG----------------TCAGCATGGA--------TCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAG-CCAT-----TCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTC----TTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAAC

a score=13851
s chr3            93330997 1382 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGG---------ATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGTTCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGAC-----AGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTT-CTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGG----GTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCC------------------------AGGATCT------GGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTC
s HiC_scaffold_1 138968739 1172 - 233722169 TCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTAT------GGCC---GACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGT-TCACAG-CAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCAC--AATCAA--CATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAG------GTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGT------------------------TATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGG-----------CATAGACC------------AATCCTGTAGCAATGGG-------------CAACACAGT---TCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATG--------------------------------------------TGTCTGGTTCAAA-------------TCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTC---------------------------------------TGGTTTAGG---------------------------------------------------------------------------TCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTC----TTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTC

a score=16682
s chr3            93331013 1353 + 160039680 GCTATGGTGAACAAGGTTCAGGATCACGT-------AACTCATCTACCCAAAGCAGAGG--CAGGTCTACCTCAAGGGAGTCTTCTACATCTCAAAGGTATGGATCTGGCTCAGGAGAATCTTCTGGCTTTAGTCAAGGTGGATCTGGGCAAGGTCGATCTTCTCGTGGTGGACAACAGGGT--TCGTTCTCTGGACAGACATCAGGTAGAAGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCT-----------TCCACCCAGTG----------------GAGT---------------CACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGC---------------TCCAC------------TAGACAG---GGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTG---------------TGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCA-------AACTGAAGGC-----------TCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCAT-----------GAGTCCACCTCTCAAGAGTATTC-------------TAGCTTTGGATCA------------------------TGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAA---------CCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGC---ATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGAT---------------------------------CTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGG------------TGTAGTCATGG------------------------------------------------------------------TTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTG
s HiC_scaffold_1 138967888 1629 - 233722169 GCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCT------AGTCATCATCTAGAA---AGCTGTGAACTGG-----AGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATG

a score=18258
s chr3            93331213 1170 + 160039680 AGTCAGCATCAATCTGGCTCCAGGCATGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTC-------------------------------CACCCAG------------TGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGG------------------------------TCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCT-------AATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTC---------TCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATG---------GGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTAT-GCCCTACTTCAGAA-----CAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTCAAAT
s HiC_scaffold_1 138967932 1218 - 233722169 AGTCAACAACAA---------AAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGT-ATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGA---------AAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCA------------------GTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAA-------ACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGT---AGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGT

a score=19901
s chr3            93331239 1132 + 160039680 TGGATCTGGCTCAGGACAGTTTCCCATCTCTGGACAGCAGGGCTCTCATCACGGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACT------------GAA---------GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAA
s HiC_scaffold_1 138969023 1075 - 233722169 TAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTC------AAAGTTCAGCCA---TTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGG----------------TCAGCATGGA--------TCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGT------------------------------------CAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTG---TGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAA

a score=16087
s chr3            93331291 1081 + 160039680 GGTCATTCTTCCAGTTCTGGCACACATAACTCAGGGTCAAGCCAGTCTTCTTCCACCCAGTGGAGTCACGGTTCTGGTTCAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCA---CATCAGGACAAACTGCTAGCTCCACTAG------ACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGTCAGGTCAGTCCACTC------GCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAG---TCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTG---------GATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTC---------TCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGT------CATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTC---------------------------TATGCCCTACTTCAGAA------CAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138968124 1126 - 233722169 GGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCT---AGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAG---GCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCT------------------GGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAG---TAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAGTCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGC

a score=11306
s chr3            93331370 1012 + 160039680 CAGAACAGTCTTCTGGTTTGGGTCATTATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTT-CTGGACAAGGTCAGG----CCTCTGGGTCAG----GACGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGT---------------GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCAT-------GTTCCCAACACGA---TGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTT---TGGTCAAACTGAAGGCT---CATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCT----ACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGG----AGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTCAAA
s HiC_scaffold_1 138967843  934 - 233722169 caGGCCAATCCCCTAATCAATGGCATCATGGATTCAACTCAAG---------CAGCTATGAAAAACAAGATTACTGGTCAAATTCAAATGACCTTATTAGTCAACAACAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTC----TAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAA---AATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGA---------------TCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTC--AA-------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGA-CAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGC---------------------------------------AGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCAT----CTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAG---------------------------------------CATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAA

a score=15773
s chr3            93331397 1043 + 160039680 ATGGTTCCACATCAGGACAAACTGCTAGCTCCACTAGACAGGGTTCTGGACAAGGTCAGGCCTCTGGGTCAGGA-------------------------------CGATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGGGT---------------CAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACC------------------TTGTTTTGGTCAAACTGAA---GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTG---------GATCTAATTCAAACCAATCCTCTAGCTACAGAGAACA---GGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC----CTCAGTCAAATAGGAGATGCGGA-----AACCAGTGGGAATCTGGCT---GTAGCTCCTCAAATTGTAATGAAAAT
s HiC_scaffold_1 138968272 1097 - 233722169 ATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAA-CCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGA---CATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGC---------------------------ATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCATTCTAGGTCAAG------TCATTCTTCTGGCTTTGGTCAATATGGATCTGGTTCGGGAAGGTCATCTAGGTTTGGGCAACATGGTTATGGCTCAGGAGAGTCCTCTAGCTTTGGTCAGCATGGATCTGGCATAGACCAATCCTGTAGCAATGGGCAACACAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACAT

a score=11617
s chr3            93331472 888 + 160039680 GATGTGGCGCCTCATCAGGACAGACTTCAGGCTGTGG---------------GTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAG--------CAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCT--------------------CACA----------ATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCA---GGATCTGGTCTATGCCCTACTTCAGAACA------ATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTT---------CTGGATATGGTCAATATTCTA
s HiC_scaffold_1 138968113 894 - 233722169 GGTGTGGC------TCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCA-AACAC-ATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTT---------CAACTGG---------TCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGC---------------CATAGGCCACATCAGTC----------------AAGTTCAAGAG-----AGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTA

a score=10308
s chr3            93331507 746 + 160039680 GGGTCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGC---------TATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGC---------TACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAG-ATGTCC--CTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACA
s HiC_scaffold_1 138968388 749 - 233722169 GGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACAT-----------CAGTCAAGTTCAAGAG-------AGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAG---ACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCTACATCCACAATCAACATGGATTTGAACCTGGTCAGTCCTCAAAGTTCAGCCA

a score=14485
s chr3            93331510 862 + 160039680 TCAGGTCAGTCCACTCGCTATGGTGAACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCA-----------------AACTGAAGGCTCATTTCAGTCA----TCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGAT--GTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAAC
s HiC_scaffold_1 138969300 877 - 233722169 TCAGGAGAGACACCAAGCTATAGCCAACAGCGGTTTGGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATCAGGCTTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAG--AGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATATGGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAAC

a score=14983
s chr3            93331536 845 + 160039680 ACAAGGTTCAGGATCACGTAACTCATCTACCCAAAGCAGAGGCAGGTCTACCTCAAGGGAGTCTTCATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGC---------CAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAAC---------TCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATA---TGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTCAA
s HiC_scaffold_1 138968270 829 - 233722169 ACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATC------------AGGCAAATTT------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA---TGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGTATGGCCGACACAGAACTGGATCAAGCCAATCTTCTAGGCACAGGCGATATAGTAGGTCTAGTTCACAGCAATCTTCCAGCAATGGTAGATACAGATCCGGCTCAGGTCAGTCCT----------ACATCCACAATCAA

a score=15248
s chr3            93331578 803 + 160039680 CAGGTCTACCTCAAGGGAGTCTTCATGTTC---CCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTGAAGGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAA------CAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTCAA
s HiC_scaffold_1 138969290 740 - 233722169 CAGTTCAGCTTCAGGAGAGACACCAAGCTATAGCCAACA-GCGGTTT--GGCTCAAGTCACTCTTCTAGCTATGGCCAACATGTGTCTGGTTCAAATCAGTCTTCCAACTACAGCCAATATGGGTCTTCCTCAGCACAGTCTTCTGGCTTTGGCCAGCATAGATC------------------AGGC---------------------------------------TTAGATCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACA------TGGTTC---TTCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACAT------GGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAA

a score=11755
s chr3            93331580 782 + 160039680 GGTCTACCTCAAGGGAGTCTTC---ATGTTCCCAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTT------GTTTTGG---TCAAACTGAAGGCTC------ATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGT------------------------------TTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTC---TACTTATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAG------------------------------------CCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACT-----TCAGAA----CAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAAC
s HiC_scaffold_1 138968113 848 - 233722169 GGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACT---AGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCA---------------------------TTTTTCTAGGCAAAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAACAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACATGGTTCTTCATCAGGACAGACACCAAACTGTGACCAACATGGATCAAACTCAAGTCAGACTTCTAGTTGTGGACAGCATGTGTCTGGATCAAACCAGTCTTCTAGGCACAGGCAATATCGGTCTGGTTCAAGTTCATCTCCTAGCAGTGGTCAGCATGGCCAACACAGATCTGGATCAAGCCAATCTTCTAGGCACAGGCGATATCAGTCTGGTTCAAGTTCATCTCCTAGC

a score=9017
s chr3            93331609 761 + 160039680 CAACACGATGTTTCAGGCTCAGGAGAGTCTTCTAGCTTTAGTCAGCATCGGTCTTGTCAAAGCCAGGCCTCTCACAATGGGCAATGTGGTCCTTTTTCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCA-----------------AACTGAAG----------GCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCT--GTAGTAATCATGAGTCCACCTCTCAAGAGTATTCT---AGCTTTGGAT------CATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAG---CATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGG------------GTGTAGTCATGGT--------------------------TTTAACAC-TGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACA
s HiC_scaffold_1 138967941 788 - 233722169 CAAAAATACGGTTCTGAACCAAGACAGTCCTCAAGCTATAAAGAGTATGAGTATGAATCAGGTAAGGCCACaagtaataacaaaaataaattaaattcctATCAGCCCTCTACTCAGAGAAAACACAGCAGTAGCTCTAGTCATCATCTAGAAAGCTGTGAACTGGAGTATGGGTGTGGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTC----CAGCCATTTTTCTAGGCAAAAAT-ATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACC-----TCAA----CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCA------------------GGCAAATTT---------------------TCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCTCAGGTCAGTCTTTTGGTTTTAGTCAGCATGGATCTGGCTTAGGTCAGTCCTCTAATTATAGACA

a score=11033
s chr3            93331705 637 + 160039680 TCTGGACAATCATCTGGTCATATTCAACATGGACCTTGTTTTGGTCAAACTG-AAGGCT--------------------CATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGG----AGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCC------CTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTG
s HiC_scaffold_1 138969534 652 - 233722169 TCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCTTCATCA---------TCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTG----TGGTCAACATGGACCCAACTCAGCCCAATCCTCCAGCTATGGTCAATAT------GGATGTGGTACAAATCAGCCTTCCAACTCTGGCCAATATGGATCTGCCTCAAGTTGTTGTTCTAGTCATAGCCAACATGGATATG

a score=4400
s chr3            93331759 210 + 160039680 GGCTCATTTCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCT
s HiC_scaffold_1 138969492 210 - 233722169 GGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCT

a score=5916
s chr3            93331767 352 + 160039680 TCAGTCATCTAACTGTGGA---CAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAG
s HiC_scaffold_1 138886900 313 - 233722169 TCAGCCACAGAACTGTGGAGGACAACAGGAAATAAACTCAAGCCAGTCCCCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTCTT------------------------------------------GCTGTGCACAACATGGGCTTGGATCAAATCAATCCACTGGCTATGGTCAGTGTGGGTCCACTACTTGTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTCAATCTT---GTTGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTATTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAG

a score=9714
s chr3            93331767 616 + 160039680 TCAGTCATCTAACTGTGGACAGCAGGGTACTACTTCATACCAATCTTCTGGTTTTGACCAGCAAAGGTCTGGATTACATCAGTCTTTTCCCTGTAGTAATCATGAGTCCACCTCTCAAGAGTATTCTAGCTTTGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGAT----ATGGTCAATATTCT------AACTTTGAACAACCTCAGTCAAAT
s HiC_scaffold_1 138969461 620 - 233722169 TCAATCTTCCAGCTATAGTCACCATAGGTCTGGTTTAGGTCAATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATGGTTCT---------TCATCATCATGCTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCAGTTCCAGAAGAGTCATCTGGTTTtagtcagcatggttctggctTAGGTCAATATTCTGGCTGTGGACAACATGGCTCAATATCAGGACAGTCATCATGCTGTGGTCAACATGGACCCAACTCAGCCCAAT

a score=7878
s chr3            93331899 515 + 160039680 TGGATCATGTGTGTCTGGTTCAGGAGAATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACT---TATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAA---TACTGCATCAGGACAGTCATA---CTGCGGTGGTCAG---TGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGG--------------------------------------ATCA-TGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTCAAAT--AGGAGATGCGGAAA-------CCAGTGGGAATCTGGCT
s HiC_scaffold_1 138968104 561 - 233722169 TGGAGTATGGGTGT--GGCTCAGGACAATCTTCCAGATATGGTCAGCAAAAGACTAGATCTGGAGAGTCTTCTAGCTATGGACAATATGGTTCTGGGTCCAGCCATTTTTCTAGGCA---AAAATATAAATCCAGTGCACATGGGCATTCAGGAAGTTGTGAAAATCAAACACATAGCTCTGGATCAAGTCAATCCTCTAACTACGGAAAATATGGATCTGGCTGTAGTCAACCTCCTAGTCAGAAATACCATGAATCCACCTCAA---------CAAGTTATGAACAGTATGGGTCAGGGTCAGGTAAGTCATCAAACTGTGGTCAGTATGGATCTTCAACTGGTCAGCCCTCAAGCTTAGGACAACATGGATCTAGATCAGGCAAATTTTCTAGCCACAGTCAACACAGGTCTGGTTTAGGTCAGTCATGCAGTTATGGTGAACAGAGTTCAGGCTCAGAACAGTCTTCAAGATATAGTCAATATGGATCTGGATCAGGCCAGTATTCTAGCCATAGGCCACATCAGTCAAGTTCAAGAGAGTCATCTAGTTTTGGCCAACAGGAATCTGGCT

a score=7722
s chr3            93331926 454 + 160039680 ATGTTCTGGCTTTGGTAACCAAGTATCTAGACCAAGTCAGTCTACTTATGAG---CATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGATCATGTGGTTCTGGATATGGTCAATATTCTAACTTTGAACAACCTCAGTCA
s HiC_scaffold_1 138969503 448 - 233722169 ATCTTCTAACTATGGTGGATACAGGTCTAGCTCAGGTCAGTTGCCTCGCCAGGGCCAATGTGGGTCTGAATCCAGTCAATCTTCAAGGTTTAGCCAACACGGGTGTGAATCAAATCAGTCTTCTGCCTTTGAGAAACATGAATCTGGCTCAGGTCAGTCTTCTGGCTTTGTTCAACAGGGGTCTGGCTCAGAAGAGTCTTTTGGTTTTAGTCAGCACAGATCTGGCTTAGGTCAATCACCTAGTTATGGACAACATG--GTTCTTCATCATCATG-------CTGTGGTCAGCATGGATCCAACTCAGGTCAGTCTTCCAGCTATGGTCAGCAAGGGTCTGAATCAAATCAGTCATCTGGCTATGGTCAACATATATCTGGATCAGGCCTGTCTTCTAACCAAAGGCAACATGGGTCTTACTCAAGAGAAACTTCTGGCTTTAGTCAACATGAGTCA

a score=7156
s chr3            93331958 371 + 160039680 CAAGTCAGTCTACTT---ATGAGCATCATGAATCTAATAGAAATCAATCTTCTGGCTATAGACAATATAATACTGCATCAGGACAGTCATACTGCGGTGGTCAGTGTGGATCTAATTCAAACCAATCCTCTAGCTACAGAGAACAGGGACTTGGTTCAAATCAGTCTTCTCAGTATGGCCAATATAGATGTCCCTCAAGTCATTACTCTAGCCAGAGCCAACATGGAGTTGGGTGTAGTCATGGTTTTAACACTGGTCAATATGGGTCTGGTTCCTATCCCTCTTCTAACTCCAGACAAAACTGTCCAGGATCTGGTCTATGCCCTACTTCAGAACAATATGGGTCTGGTTCATGTCAGTCCTTTAGTCCTGGA
s HiC_scaffold_1 138886938 323 - 233722169 CAAGCCAGTCCCCTTGCTATGGACAAAATGGCTCTGGCAGAAGTCAGTCTT---GCTGTGCACAACATGGGCTTGGATCAAATCAATCCACTGGCTATGGTCAGTGTGGGTCCACTACTTGTCAGTCCTCTGGTTATAGACAACAAGACTCTGGCTCAGGTCAATCTTGT---TGTGGAAAATATGGCTCTGAATCGAGTCAATCCACTGGCTA---------------------------------------TTGTCAGTGTGGGTCCAGTTCAGGAAAATCCTCTGGCTTTGGAAAACACTGTTCTACCTCAAGTCAGAACACTGCTTTGGGACA------GTGTGATTCAGGTCACTCTTCTGATTGTGAA

a score=49309
s chr3            93353893 3794 + 160039680 [encoded data, 4391 characters]
s HiC_scaffold_1 138988941 3681 - 233722169 [encoded data, 4391 characters]

a score=26832
s chr3            93357721 1790 + 160039680 TGGGACTCCGACTTTAACGTAAGGCACCACACACTCTCCTCCCAGAATGTGTAGGCAGGA-GAGAAAGGCAGTTGGTACTTG---AAAGTTCTCTCACCCAGAGGCAGA--GAAATGACTCAGGCTCATCCCCACCAAAAGG-----------GGCCAAG--AAGTACCCAAGAGACACATGTTTCAAACAGAAGGACACA----GTGTCTCTGATCAAGTAAAAAGAATCCAACAACTAAGGACACAGGTGCCAGGGGAGCAT--GGGTCTAAAGAGGATTCCAGTGAAAACATCTAACTGAGGAGTAGAGAACCAAGCATCAACC-AGCCTTATGAATTACTCCTACCCAGGGTAGAGGTAGTGAAGACTTATTAACTTGGGAAACA------GAGATAAGTTAACAAATGGTAGCAGAAGGAACTTGGAGAAAAATTCAGAAACC--AAGAATTGGAATCAATATTAAGAGCCTGACTTAATTCCAAACTGGAGAAAGATTGTTAGTGGGCCTGTTAGAGAGAAAATGAACAGGTGAAATAGATGAAAGAGAAAAAAATGAAGGACAGAACTGTTTATGCACAAATTA---GTCCTTTTAAGGAAGCGGCCTTACCTTGTGCCTCATTTCTACCACTCAAAGCCCTTACTTAGCAAAATAAACATACATATAGATTACATAAGGAAGAAAGACTTAAGACATTGAGCATCACTCAATAGGAAGAAGTATGGCAAGA-AACATGAGTCGT-CACAAGTTATGGATGGCACGGGTTTACTAGAGGGTTCTGTCTTCTTGACAAAGTGAgaagccatgtggtctgtgaatgaacacaagactaaaagtgaagaggttgactcagactagctttgtcaaaaacttcctataagaccctaaaacaatccatctcattttcctgggacctattattttatctataaaaggaCTAGTGTGACTGCTCAGTTGATTGGttggtttttccagtttctggaacactcttttctcagatctctaagtggctctctcatcctgtttttccagcttttgtttaaatcttgcctgcttaatgggtatttata--aactaccctacctaatagtggaac---------tcactggtcccactcatacac-------------------cctct--------------------------------------------------aATTTGA----------------------GATCTTTGTTGTAT---CTGATACACTTCAAATGACTGACCAATGCACAGAAAAGCATAAAAATCCAATAAATATTTGTTAAATGAGTCTAACATGGGAGAAATCCTGGGGGTGGGGAAGACTAGAATAATAAACCATTTAAATTCTCCCTAAGGT------AAGTTTCTGAC---ACATTGGTCTATCCCAATATTCTCTTAAGCCTTATGCAATAGTAAGGGGT----------------------CAATTATTCAAT--AATTAGGAGACAGCAAGGGCAAACAT--CCCTAGTATTCCAGGGTCACCTGCTGTCAACCCTCTTTAGTATCTGCTTAAGCAACTGAAGTGACGAGAGATGCCAGGGGTAAAAGTTACAGGGAATACTTACCTTTCCCAACAACCAGGTTTTCCAGTAAAAGAAGAAGTACCCTAATGCTGGAAATTAGGTATCTCCAAAGGTCCTGGGGAAAAGATA-ATTAAATCTCCTGTGAAGGACAATAATGACAGTTAAGTGC----------------CTTGCACTGAGGTCT-----------------------tatgtagcagatat-taacttaagcact---tttatatattccttccttcaattctcacatccagcccattgatgt-------attgtcaccagttaa------------------taggtgagCATTTC--TTTGAAAACCTACAACTTAGACTAATAAATAAGAAAATT-------------------AAAGACCAAGTGTGCACGGATTGTTTGGGA-----GGTGCTGAAGCACATGTGCTGGTC
s HiC_scaffold_1 138994692 1938 - 233722169 TAgtattatgattttaaaacaagTCACTACAA--TCTCCTCTGAGCAATCATGGGCAAGAAGGGAAAGAGATCTGGCCCATGTCCAGTGTTGTCAGGgccagaagcagaaagaaatgatTCAGACTCA--------GAGAGGCAGCTTGGGTAGACCAAATACAGTATCTAAAGGGTACAGTTCCAAAACAGGGAGACACACACAGGGTTGCCAATCAAGTGAAAAGTTCCCAACA-CTAAAAGTATGGGTAAGAAAGTAGTACCAGAGAAGAACAAAGAATCCAGGTAAGAT-------TGAGCAGT-GAAAAGCAAGCATGAGCCTAGTCTTGTCCAGTACA---ATACAGAATAAAGAGAATACAGTCTTGTGACTTGATGATATAACTAAGGGGACCAGATATTGACTGGCAGCAAAAGAAACCTAAAGGAAAATCCAACAACCCAAGAAATAATAACCAAATATAAGTATGTGACTTAATTCTAAGCTGTAGA--------TAGCAATTCTTTTGGT------AGGAGTGGATAAagtagatgaaaaagaaacaa-tgaaggccaaaaatgtttatatatatattaatagtgCTTTAAAGGAAGGA---CTACTTCTACCTTCATTTCTACCCTCCACAGCTCTTa----gtacaataaatatt--tactgattacattttaaaaaatcac-----agtttaATCAGTACCCAGTGGGG-GAAGTATGCCAAGACAACATGAGTCATACTTTGGCTATGTATTGCGCAACTTAACAAAAAGGCTCTGTCACCTTGACTAACAGTGGAA--ATGGGATCTGGTAA--------GGACTAAAAATAAACAGGTGAAACTAGACCAGTTTTGTCAACTACCTCTTTCAAGGCCTTAAGTCACTTCACTTC----TTAGAGTCCCAATTACTTCATTTATAAAGGGGTAAATGTAACTATTc---caatt------ttttcataatttttggaACACTTTCCCCATATCTGTTTGGTTAACTTCCTCATATC--TTCTTGAATCTTTGCTTAAATCTTGTCTTCCTGATGG-TACCTATCCTAACACTGTAACCTAACATTATAACCTGCCCATCTCATcaaccccacccccacacacacactggtctatatttttctcttttttcagtacACTTGTAACTTATGTAGTATCTTCATAGTTGCCCATTAGAATTTAACCTCCATAAAGGCaaattctttgttctttgttctgtttACTAACATACTTCAAGCCTCTGAATGTTATTTGAAATAGAATG----TCCAATACATTCTTGTTGAATGAATAtattaaagaacaaaatcttgTGA-AATAAAAACTAGAATAATAAACCCATTAAACTCTTCTTGAGGCCCAGAGAACTTCTTGCCTGTGCCTTCAAGCATCCCTACACACCCTGGTAACCTATAGTACAGTATGGCATGGGTGTTCACTAAATTCTTAAACAAATTTCTAATTGAATTACAAATCCAAAAGGGCACATATATCCACAGTACTCTGGGGACACCTGCTGGCAACTCTATTTAGTAACTACTCAAGCCTCTAAAGTGACAGGAGTTTTCCATGGTGAAA----------------------------AACCA-ATCTATGAGTAAAAGGAAG------CTAG-GTTGGAAACCAGGC-TTTGCAAAGGCTCT-TGGAACAGATACATAAAATCTCTTCTGAAGGACCATAC--ACTGTGGGGTTCCCATAACTTATTTCCACTTACACTGATAACCATAAAAAGTATGTACAAAATGCGCATGTGCCAGATATCTTTTTTAAACATTACATTCACGTATTACTTCATGTAATCTTCACATCCAATCTGTTGACGTAAGTACCACTGTTGCCATTTGAACATTTGCGATGAACATTTAGATGAACATCTCCTTTTGgagtgttttcatttaaataaaacagtgaaacaatttaatgaaaatatcagTAAGAAACATCAAG---GCATTCTATGTCTGGGGAGAACAGTATTAAGGTATAAGTGCTGGTC

a score=12065
s chr3            93376742 574 + 160039680 TTTACAAGAGTGTACAATGCTACAAGATCAAAGAGATGACCAAAGCATGGTGTTTTTACAGTTTTCAGG--GGGAACAATGTATTCATGAATGCATGACAGGACAAGAGGGATGCCTGGACTAGGATGATTACTTGTTT-----GGACGTTGCTAAGACATAAATAGGGAAGGGTAATACAAGGGAGTGGAAGATGGGTGTCACTTCATGGAGCTTGTTCTTTGAATTCATTGCAGGTCCAGTTACTAGTCTCTGGTGATTAAGGCTATTTCCAGGTGTTGCTATGTAAATG------------AATGAATCTAATGGCTTCCAGTAGCCA--GAAAACACAGGTGAATGGCCCTTTCTGAGATTA----TCC----------------TACAATAACCAATACACCAAATGGTCCTATTTTGAAATAGTATGTCCTTAATTTCCTCACC--------------TCCAAGCTTAGCTCTGAGAA-------------AGAAGGGTGCTTCATGGGTGAAGTTGG-----------AGACCGAGAGGAGGCGGGAACTCATTTTAGAGAAG-TTGTCCCACATGAGTAGACATATGAGATGAGCCTCTGGGCTCAGGACAGGTACTATTTTAACTGGGATCTGGGAATTTTGGAG
s HiC_scaffold_1 139016676 636 - 233722169 TTTACAAGAGTG-----------AAGtctgaagaaataatcaaagtatgatgtttttatatcttttaaacaaagaacaatatatttgtgaagaaatgacATGATAA-ATGGATACTTGGATGAAGGTAGCAAACTCTATTCTAGAGATGTTACTAAAAGACCTATGGGAAATGG-GGTAGAAGCTAGTGGAAGGTAAGTAATACTTCAAACAGTTTGTCTGTTGAGTCCATTACAGTTTCAAATACCAGTCTCTGGTGACCAAGGCTAATTTCAGGCCCTAGAATGTGAAAGTTATACCACCAAAATAACCTTTATGACTTACTGCATATAGGGAAAGAACAATCAAAAGGCTCTTTCTAAACTTAAATTTCCTCAACTGATTTCAGCATGAAACAACCAATATTCAAATTGGGGACCTTTTG--ATGACACATCTTTAACTCCTTCATCATATCTGGGAGAGATCAAAGAATGGCTCCTGGAGTGTTTCACTGGATGGAAGGATGTTGACTTTGAAAGGCAGGCAGATTTAGACAGattgagagaaaaatgaaacacatttctGAGAAGACTATCC--CCTGAGCAGATGTGTGGAAATAGGACTAGGGCTCAGCAAAGAGAACATTTAAACT-ACAGCTGGGAGTTTTGAGG

a score=15578
s chr3            93377903 787 + 160039680 GAGAGCAAGTA------TTGAGTCTGTACAATGCCCCACTGTGACTGTGGCTGGCTACCAAATTTTCTTAACACCTGTTAGATACATGCCTGACAAGTTCATCAGGTACCACATACCTTGAGCTTTGTTGTCATAAGCCCAATAAGAGATGGAGGTGGGGTCCAAAATACAGGGCCTTAATACACTAGACAACTGTTTCCAGGTTTTCCAAACAGTAGGCAGTTCAAATCCAAAGAGAAGCAGAACTGCC---CCATGG--AGATACGTGAGGCTCTGCAGTGC-------------------CTGATTCAGGAGGAATCAGAAGTCTTCAAACTGCCACCATGTATTT-ACTCTAAGATGCCACTAATCCCCTGTAACACTCCTGCATTCTTGCAAGTGTGTGGGTGG-AGCAGCTATTGTCTCTACTGATTTGGGGAACAAAGGCCAAGAAAGACTCAGTCTTCATG---------------------------------------------ACTGACAGAACAAGAAAGC----AGAACCCAAGAACAAGGTGCAAAACATGAGGAAAAGACAACCTCAG-CTCAGCCTCCATCCAGGGAAGGA---------TCCGGATCCCGCTGGCTGAGATCCAGTTCTTCCCCTGGCTGCTGCATGTTT---------CTAAACATGGCTCAGAGCAGT-----------GGGGAAGTCACTGGCCGTGTTT------GGACCAAAAGGTCCACAAAGACATGGGTCTTGTATGCTTTGCTCATAGTATGTCCCGA-TGTTACATGTTTAC-------AGGAAA---GACAGAG-------CCTAGAATAGGGTGGGCAAGAGGCTAAGAAGCACACAGAGTTAAATATAAACACCAGGCTCCTGAGAGCCAAAAAGGCCACAT
s HiC_scaffold_1 139017405 889 - 233722169 GAGAGCAAGAGAGCCCTTGGAATGTGTACTGTTTGCCACTGTGGCTGTGGCTCATCAGCAAACTTCACAGACAACTGCCA----CATCCCTTACAAGTTCATCAGGAGTCACAT-CACTAAGCTTTGTTGTCACAGGCCCTAGAAGGAAGAGAGGTAGGGCTTAAGACACAAGGACTTAACACccaaaacaattatttctagttttcctaAACAATAGACAGTGTAGGCCCAAGGAAAAGGACCATTTTTTTGCCATTGCAAAGTCTGCAGGGCTTAGCCATACATTGTGTCAAGTAGACCTTCTAATTTGGGAAGCACTGAAAGCCTTTAAGTCACCATGGCATCTTTAATTCTAAACCATCACTAATCATTTGAAACACACCTGCATTCT----------TAGGTGGCAACGTCTATTATCCTCATTCAACTGATAAGTAAATGCCAAAAAATAGTCATGCTGCCTAGTATGAGAAATGTGAGGCGAGGAAGAACTTGAAATTTTGGGAGGcactcaaaaaagaaaggagTAGAGAGAAGACAAGAATAAAGAAGTAGGAATGAAGAGAAGATAAATCCTGTCTCAGGCT---TCCATGGCAGCAGAAAGCTTCCCTGAACCTCTCTAGACAGGAT--GGTGCCT--------TGCTCTATGCTTCACCACCACCTGAACATGTCTCAAGGCACTCCCCACTCTCATGGGTAACGATTCACC-TATTTCCTGTCAGACCGAAAGACCCACAGAGGCAAGAGTCCTGTCTGTCTTGTTC--AGTGTGTCCCCACTGCCTCGGATTTACTAAGTAAAGGAAACAGGAGAGGGTATGTTCCCTGGAACAGGGAAGGGTGGGAGCCCAGAATCATGT--AATTAAATGCAACTACCAGCCTGCTGAGAGTTCATGAGGCCAGAT

a score=34615
s chr3            93381067 1936 + 160039680 CCTCCTCTTCTGCAAGATGTTCCGCTCTCTGAGAA---------------CTTATCTGTGGAGTTAGGTGACTAACTG--TGGGCTATGAAAGGCCAAATTATGGCAAAAGTAAACATGCAGTTCAAAG-------------ATGCT-TATTCTTCACAATCCCCATCCTCAACACTCAAGTCAACGGCAAAGATC------------------------ACAAATC-CCTCTACTGTTTCTTAG----------GGCAGCATCTCCCT-CTGTGGGTGGCTAGTGTATTAAATAATAGTAATAATAAATCTCTGCTCATAAAACTG------------TCGTGACACACCCCACCAACAGAAGGTGAAATGACGTCAGCAGCACACCGGAGGATCTCCGCATCTCTGGTACTTAGTGAGTTTCTAGAATGTTGGCAATTGCGAAAT-AATTGCAGCAGAAAAG---------------GGTTGCATGCTTCCCATAGCAGACCTAGACTGGACAGTCTCAATCATAAGCACACTGAATCCTTGTAACAATCTCAGCCCAGTGAGATTTCCATTCATGTCTGCCTGGTCCTCAGATGCATGTCATCTCTACCTTGAACTAGATTATTAAATGTGACTACAATTGAGTGTGGGGCATAAACAGACTCTCAGAAAATGTGCTTGTGTTAAAGAACTCAGACTTGCttaagacaggatctcactatgtatcccaggctatccttaaatccacaatccttctgcctccactgaatactgagattacaagcatgtaccagccacaaccATAATAGACAAGTTGTATTCTAACTGTAGATTTAGTGTGGACTTTTCATGTAATCCTATATGATCAAATAAATAATTTTAAAAATCACA----TTTTAAAAAACCAAACTAATTTTTTTTTTCAGAGATAATGAAA--------------------------CCTACAGGACATAAGGTATAGAG-TTCTGGTCCTTCCAAGCCACACCTCAACTCCATGCACTCACTTTGCATAGCTGA---GCTTATAGCACAGGGTGAGGCACTGAA-CACCTGCTCAAAGTGACTGCCAGTCTCTTCTCTTGCATGCCACCATGAGCAGA--CTGCCAGTGATG-----CAGAGAAATGGAGGCAGACACTCAGACAGGCAGCCTGGCACCTGCTGGGTTTGTCCAGCCCTGTAACACATCAAAACAAAATCCTACCTG-GTCCTCCT--CCACTCCCTGTTACCT--CCCTCCTCCACACTAAGCTCTGACCTGTAGCTAACACCCCCTCTGCTCCTGGGCCAGGAAG-----------------GTTCGAGAAACATGATTCTTTT--CCTGTATCATAACTGGGGCCATGTGGATCATTTGTGACCACAACAAAAGAGCGAGGGTTTAAAGGCAGTGCGTAGGCTGGGCTCTCATGGCAAAGGACTGTGGTAATTAA-GCCAAATCATAGCTGAGACACACAAAAGGCTATGAGGATGCTGGAGCGCTGGAATTGGG-----AGCAG--GAGCAGAGTGTTTATCCAGGCTTGTCCCACTGTAGGGAAAGAATCATGATACTGAAATTCCACTCTTATTCCAACCATAACCCCCAGCTCTCCCAAAACTTCGTTCTGGAATCCTCTCCTTCCCTGACAGGTCTGTCTTCTTCCTCACTATACATTTGACAAAAGAATAAATGAACAAATCAAAGGATGAACCAGGCAAGGGGAGagagacagagacagagacagacagagacagaAGAAACTCCTTCCTGGCCCCCAGCCCTACTCTTCTTCCCTGTTT-TTGCCTATGCCAAGAGTATGTTAG-GTAGACCTGACCAAGTAGGTGTAACACTCAAGCATTAACT--TATCAGA--------------CAGGCAACAAATCACAGAAAATATGAAACACTTCCCTTCCCCAGCCCTACATAATGTTCACCAAAACCCCTAGACCATCC-CCAGTGGCCTCTGACCTCTAACTCACTGGCTGAACTTTGCTGGCAAAGGCTTCAGATTAT---TCTCCTTATGCAGCAAAGGCAATTGTACAAATGGCTTGCTCCTGGTACTCATTACTTTTTTTCTT
s HiC_scaffold_1 139022507 1883 - 233722169 CCACCTCTTCTACAAGATGCGCTGCTCTCCAGGAAGCATTTGAATACAGCCTTACCTGTGATGTTAGATGGCTATGGGAATGGATTATGAAAGACTGGCTTATGATAAAGGTGAGAGTAtagcttaaaataaattttataaaatggtcTACTCTCCACAACCAACATCCTCCAGACTCAAGTTAATGGCACACATCTTACATCAGACTTACACTAACCTCACAAATTTCCTCCATTGCTTCTCAGAATAAGCCGGGGCAGCATCTCACTGCTGTGCTTGGTTAATATactaaataataatagtaat----ctTTGTTTATGTAATAGCTGTATTTGGGCTCCTGACAAACTCTGTACATGGAAGAT-AAATAAACTCAGTTGTGTGCCTAAGAGGGACAAGACCTTGAGTGCCCACTGTGTTTCCAGAAAGGTGACAACAACCAAGCCGGctcaagaaggaaagaagaacacATATCACGACTGCATGCTTCT-----------GGGGCCAGATACTTCCATGAATGAACACATCAAATCCTT---ACAATCCTGGGCACAGGGGATTTCCACGCAGATCT-TCTGACCCCCACAACCACACTCTCTATGCTTTGGTATTGATTAGTAAATATGACCAGTTCAAAGAGCAGAACATAGATA------------------------------------------CTAGGACAAGA-ATGATCATATA---------------------------CTTGTGTTT----------------------GCATGT-------------------------TTGAATTCTAACTATAACTTTGCTGTTGACTTCTTATGTGATCCTGCATAAC--------------TAAAAATCACAGCATTTCTCCTGAGATGAATTG-TTTCCCTTGTCAAAGGCA-TGAAAGTTCTGGATACTTGAAACTGATTGGGCCTGAGAGGCTTAAGATTCAGGGACTCTTGTCCTTCCAGATGAAGGAT-ACCTCCCTGCACTCACTTTGCATAACCAACGTTCTGATGGTACAGAACCAAGTTCCAAAACACCTGCT-AAAGAGACTACCAACCTCTCCTCTGGGAC-------TAAGCAGAAGCTGGTAGGTATGTTGCACAAAGAAATTCACACATGCATTCAAATAGACAATCGGGCTCTCACTGG-TTTGACCAGCCTGG------GTCACAGTAGAACTATACCTGAGCTCTCCTTCCCActgcctcttttcttcccctgtGCCTTCCTAAGCTCTGTACTATGTCTATACTCCCCTCTGCTCTTAGGAAAGGAAGCTGATTCTGTTTCTGATGTTGCaagaacatgatttttttttcctgaag-gtaAGTGGAACCCTGTGGAACATTTGTGACCACAAGAAAGAGGCTGGAGATTAAAGGAGGATGTTTGGCAGGATTCCCATGACAAAATGGTATAGTTATTAAAGCCAAGTCATGGCTGAGGCATACAGAAGAGAATGAGGTCACTGGGACAAAGGTATTGGGTTTGGGGTAGTGGAGGACAGAGTTTGCCCAAACCGTTCCTGCTATAGGAGAAAAACA--GATGATGACATTTGGGGCTTACCCCAACCCCAGACTCCAGCTC-ACCATAACCTCTTTACAGATCTTTCTCT---ACTAATGgatctgtcttc---ctctctaaacaTTTGTCAAGAGGGTAAATGCATGAATAAA----TCTAGCACCCAATG--------------------------------AAAAAAGTCTTTTGCATGGCCTCTGACCCT-CAGTCCCTCCTTGTTTCTTACCTATGTTAAGAGTTTTTCAGTGGAGA---GGAAAAGTAGGTGTATCGTTCAAGCATTAACTACCCTCAGGATTTAGGCAGGATTTAGGCAACAAATCACAGAGATTTTGGGAAAACATTCTTCCCCAGTCCTAAATAGTCTCTACCAAACCCCCTAGGCCATCTGCTAATGGCCTCTAA---------------------TAGTCTGGCAAAAGCTTTATACAATAAATTTCCTTATTCAGCAAAGGAAGCTTTTGCAACAGCTT----CTTGCACTTACCTGTTTTCCCCTT

a score=9585
s chr3            93383204 1353 + 160039680 TCACCTGCTTTGATTTCTGTGATCTCTTGGAACTCTGGATTCAATGCCCTCTTATACTGGACAACCAAGGGAACGAGACAGACGTAAATATGAGCTTAGAAAAGTTATTATCTGCTCTTCT----------GGAAGTCAA-AGAATTGATACCTGCCAAGAATGGCTTGGGCATCAACCTGCCTGCATCAGAAGCAGAGCAAGATGAGCTCTGGAGGGTCTttctcaatctgtgggtcgagacccttttggggttgttgaacctttgcacaaggtttgcctaagactatcagaaaacagagatatttatactacaattcataatagtagaaaaattactgtcatgaagtagcaaaataataataataataataataataattgtatggtggtgaaagggggttggggagggggcatcaccacaacataaggaactgaatcagagtcacatcattaggaaagttacaaaaccactCACTGGTCTATGAGTTTAGATCTCACCTAGCACTCACTGCCTTCAGTCCTCTAACTAGCCTGCTCCATGTGTGTCT-TACACATGTTGGCCAGCATCACAGATGAGGCCAGCCACCTGC-TGTGAGA--------CACATAATATACCTGGGGAATGGCCTCGCAGTTAGGCCTGGGAGATTGGACATATAGCTATTTCTAAGGAA-CACAGTTCTTTCTGT-TCCTTCTGTGCGTAAGCTCTTCACTATACCAGCAACCACTCTCCAGACTTCTTGATATCATTGTGGCCTGGCAATGGACCTGCTTCCAATCCCAAAGGGACATCTTCCTGTCCC-CATTTTGTAAGGTTCT-----ATGTTTTTCATATGTCA-------------------CAGGAG-TCAATAAATTACAAACAGAATGAATCATAAATGAGAATTCAGAGTGTACAGATTTGAAGAGGTGGAAA------GTCAACCAGTTCAGCCCACCGCTAA---------------TGGGACCCCAGTACtgtgacaggg-tcatgg-agaatgcaaggatggggacactgaagtctctgtcctcagagaattcatcgtttatttcagaggtaagaattacacgtagaaaacaGGGCTGAAGATCCACAAGAAACAGAAGCTAAGGCTTTATCGTCTATTCTACCAGCAGCCCATGACCTAGAGAACGGCACCCCAGCTTATAGTCAGTGAAGTCTGTCTT----GTGGAGGACAGAACTTGTAGGAGACAGAGAGAGGAGTTAAGATAAATCTTTCTTTCGCAGAGCTCAGATTCTGGTGAGGT--------TGAGATGGGCAGAGTCATCTGCAGGATTCAAAAGAGAAAC-------CAGTGGGAG----GGCAAGGATAGAAGATTTCTGATGGAGTAGGCTTAGAAATGTCTGAGAGAAAAGATAACTCAAATGTATTTCCAATGAGTA
s HiC_scaffold_1 139024373 1070 - 233722169 TTACCTGTTTTCCCCTTCCTGCTCTCTCAGAGCCATAGAGGCAGCATCCT---------AACATCTGAGGGAATAAGATACA---------------AGGAAAGTGGGCATCTGCTCTTCTTTAGAGCTTTAGAACTGACCAAAAATGATACC---CAGGAAGGGCCTGGCTATCAGCCTTCCTGGATCAGAAACAGGGCAAGATATTCTCTAGG--------------------------------------------------------------GCCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGCATTTGCTTCTCACTCAGCACT------------TCCTTTATCTTGGCCACTCCAGAGCTGCCTATATTCATGCTGGCCAGCATCACAAATGCAGTCACCTGACTGCTTGTGAGAGTTGGGGCTGCAGGCTACGCTTGAGGTTCCTCCTCTATGGTGGGCCCAGAAACCTTAGCATCCAGCTATTCCTAGGGAAGCAAAGTAATTCCTCTGTTCTTCTATGCATGACCTCTTTAAGAGACTATCAGCCATTCCCTCGCC--CTTAAAATTATCATAGCCCAGCACTGGTCCAGCTTCCAACT--------ACATTTCCCTGTCCCATACTTTTTAAGGACCTGCAAGACAATTTTCATGTATTACTGTCTTTATTCCCAACAGcagaagaacaagaaa--acaagaagaatgaa--aagaaggGGAAGGGGGAGAAAACAAGCTCTAAATTCCAGTAAGAACCTGTCAGGAAGCTCAGACCTGCAAGAGGAAGGTAGTCCTATTTAGGAGTCCTACACTAAGGCTGGGCTCATGGCAGAAGCTGAAGAAGGGGAAATACCGGTTTCTTCCCTTGGATAATTCATTATCTAGTTCAGAGTCAAGAactacacataggaaa--------------------aaacagaa------------------aatcaactgG-GGTATAAGAACTGGAGAAAGTCGGCCAATTTCACATTTAA-GACACCTACCTTAATAATGACAAGCAGAGCTTgtacaagagagaggaa------aatagaAATCTTTTCATCATAGAGCTCAAAGACTACTGAAATAGACACAGTGAGAT-GGCACAGAAATCTGTAGAACACAAATGAGAATtatcaacacagtgaaaatatcaaagaagaaaggagagttCCGACTGGGAAGATTTAAACAAGT---------------ATCGACATGTGTTTTGAATGGGta

a score=27577
s chr3            93387308 834 + 160039680 aaacaaacaaacaaacaaaACACCTCAGAAACCTGCTTGGAAAGACCCAAATGTTGCCACA------TTAAAGACATCCATTTGGTCTTTCGCATTATTAGTCATATTTTAGGGAAT--TTAAAATCCCATGGGTCAAGTTCAGCAACAGCTTCTGCTG-----------------------------------------------------------------GGCTCTTCTAATAGAATCCAG-------TAATATAAGAGGTACAGATACTTGCTGGGCATAAAGATCCCAGCTCTACCCTAGAACACTTCTAC------CCTAGAACCCCCAGGCTGCCTCCCTTTGGCTCAGAGCATACTTTCTGACAAGGCTAAAATATTGCTGAGGCCAGTGGTACCTTAAAAACCCACTGACTTCTACATATGCCATTTA-GGGAAATGGCCTATAATTAGC-AAGAAGGCAGTTCA-CTGTAAAGAAAGACTT-AAAATGGCAATTTATTTATGCAGATGATAATGGGTGACCTTTGGATATCATGAAATCTCAAAAGAGTTTTGTGTCTATTAATTAGCCCTACTCCTTTCTGGAGG---GCACTCATTTGCTCCATCTGTATTTTTATGTTCCTGCCAAATGCCAAAGATCTAGCAAGAGTGAAATCTAGCATCACA-------CAGGAGCCTTCTCTTCTAATCCAAACAG----CCATCTTTGGGAGTCAGTGAGCTTCATCTCACTCACTAAAGAGGCATCCAAAGTCTCATCAGAAGAAGG---AAGTCTGAGAGTTGTGTGAGAATCGCCTCTGGTGATTT------AATCTGAC------TCTACCTCGAAAATCCATTAACTCAAACT--------CAGGATGACCAAGCACATCTTTACCCCAAGATAAATAAATATCAAAGGCTT-CTATAGGGTCAAGAATCACACAGAGA
s HiC_scaffold_1 139029809 946 - 233722169 aagcaaaaagaaaaagaataaac-tcaGAAACCTGACATGAATGATACAAATTCTGCCACAGTCACTTTAAAGACATCTATTTA-----TAGCATTATTAACCATGTTTTAGGAAATACCTGAAATTCTATGGGCTATACTCATCAATGACTTCTGATACTTCCCGGATCATTTCTGTTAGGAAGAAGATACAGCCTGAGATGTTAGGGAGGGGAGGTATGGCAGGTTCTTGTATCCAAAACCAGAATCATTTAGCAGAAGAGGCTGGGCTATAGACTGGGCGTAAGGAACACATCCCTAGACTAAAACCTGTGCACGAGATCCCCAAGAACCTTAGCCCCACTTCCTTTGGCTCAGAACACATTTTCTGACAAGCCTAAAATAGTGCTGAGGCCAGTATTACCTCCAAAAACTACTGACTCTGACAGATGCCCTTAATAGGAAAAGGCCTATAATTAACGGGGAAGATAATTCATCTGCATGGAAagttttgaaaatagaaatgtatttgtGCAGATGATAATAAGCGACCTTTTAATATCATGAAATCTC-AAAgcattttatgtctattaattAGGCCCACTCCTCTCCAGGGGAAAGTATTCATTTGCCTCATCTGCA-GTTTGTGCACCTGCTGAATGCCAAGTGGCCGACAGGAATGAAATGTC-CACCCCAGTGTTTTCAGAGGCCTTCCCTTCTAA---AAACAGATACCCACCATTTAGATCTTGTGGGTTTAAT----CTCACTACATTGGCATCAAACatctcaaaagaaggaaagataagTCTGAGAGTTCCATAATAATTATCCTTAATGATTTGGCCAAAATATGACAAGGAAACTCCCAGAAAATTCCATTACCTTAAAACTATACCTACATACCCACTAAGCACATCTttatctcaacataaatgaatagCAAAGGCTTGCAATAAAGTCAATAATTGAACAGAAA

a score=105315
s chr3            93393241 3842 + 160039680 [encoded data, 4804 characters]
s HiC_scaffold_1 139034032 4648 - 233722169 [encoded data, 4804 characters]

a score=4498
s chr3            93394966 164 + 160039680 GGGTTTGCCAAGATGCCTCAACTTCTTAATAGCATTCTCAACGTAAGCAAGGTTTTCCAGGACTATGCTGAATATCATGGGGTAGGCGCTTCACTGAGCAAGAAGGAGTTGAAGCAGCTGCTGCTCACTGAGTTTGGAGACATCCTTCGGGTAAGATA--CATAGA
s HiC_scaffold_1 139132475 166 - 233722169 GAGTTTGTAAAGATGCCTCGGCTCCTGAGAGCTGTCTTCTGTGTAATCGAAGCATTCCACAAGTATGCCAAAGAAGATGAGGACAAGGCAGTGCTGACCTGCAGAGAGTTAAAACAGCTCCTTCAGGGCGAGATTGGGAACTTTCTTCAGGTGAGGTGTTCATAGA

a score=5786
s chr3            93395470 230 + 160039680 TGAAAGAAC-ATTTTTTTTTCTTCT-----CACAGAGACCAAATGATCCAGAAACTGTGGAAACCATTCTGGAACACTTGGACCGAGACAGAAATGGATATGTTGATTTTCATGAATACCTCTTGCTGGTATTCCAATTGGTCCAAGCCTGCCATCATAAGCTAGATAGTAAGTTCTATGG---ATCTAGAACCTCCTCCCAGAAAGAACATGATCAGGA--------AGGAACACGGAGCCATAAA
s HiC_scaffold_1 138967345 244 - 233722169 TGATAGAACTGCCTTTGTATCTTATTCCTACACAGAACCCAGATGATCCAGATACTGTAGATATCATCCTGCAAAATCTGGATAGAGACCACAATGAACAAGTGGATTTTACTGAGTATCTTCTGATGGTATTCAAGTTGTCTCGGGCTTG---TAATAAAATTGTTGGCAAAGACTACTGCCAAGCTTCAGGGTCAACACACAAAGATCATAGTCATAAGCACCAAGAGGAACAGAGTGacacaga

a score=7183
s chr3            93395482 140 + 160039680 TTTTTTTCTTCTCACAGAGACCAAATGATCCAGAAACTGTGGAAACCATTCTGGAACACTTGGACCGAGACAGAAATGGATATGTTGATTTTCATGAATACCTCTTGCTGGTATTCCAATTGGTCCAAGCCTGCCATCAT
s HiC_scaffold_1 139083421 140 - 233722169 tttttatcttttcatagaGACCACATGACCCTGAGACAGTAGAAACGATCCTGGGACTTCTGGATCGTGATACTAATGGAATTGTTGATTTCAATGAATTCCTCCTGTTCGTTTTCAAAGTGGCTCAAGCTTGCTATTAT

a score=3900
s chr3            93395486 135 + 160039680 TTTCTTCTCACAGAGACCAAATGATCCAGAAACTGTGGAAACCATTCTGGAACACTTGGACCGAGACAGAAATGGATATGTTGATTTTCATGAATACCTCTTGCTGGTATTCCAATTGGTCCAAGCCTGCCATCA
s HiC_scaffold_1 138947338 135 - 233722169 TTTGCTTTCACAGAATCCAGATGATCCAGACACTACAGAAGTTTTTATGCATATACTAGACATAGACCACAATGAAAAAATAGACTTCACAGAGTTCTTGCTGATGGTATTCAAGCTGGCTCAAGCATATTACCA

a score=4438
s chr3            93395721 151 + 160039680 CAACATAGGCAGAGGTATGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGAC---------------TCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGA
s HiC_scaffold_1 139036972 163 - 233722169 CAACATGATCAG---TCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgaga

a score=24035
s chr3            93395721 1182 + 160039680 CAACATAGGCAGAGGTATGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGACT---------------CTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACA------------TTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATT-----------ATAGCTCAGATCAG---TCTGAGTCAGACAA-----TGAATCTT----CTAGTTCTAGTCAAAGACTGGGTTATAAATCTA-----GTCATGAA-CAGCCCAAAGGTCAAGGATATGTCTTTGCCTTA-AGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACAT---------------------------CTGGACAACA--AAGCAG-----------TCATGGTC----AGTCTGGA---------------------------------AGATTCCGAA-------------------------AAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTA---TGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGA------------------------------------GTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACA
s HiC_scaffold_1 139037080 1600 - 233722169 CACCATGGTCAG---TTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGAC---CAATCTGAGAA--ACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGG-ATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaagaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCA------------------------------------GACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCA

a score=5089
s chr3            93395735 137 + 160039680 GTATGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGACT---------------CTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGA
s HiC_scaffold_1 139036947 152 - 233722169 GTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGA

a score=4803
s chr3            93395738 134 + 160039680 TGAAGGAGAACGCCGGAACTCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGAC---------------TCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGA
s HiC_scaffold_1 139037022 149 - 233722169 TGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGA

a score=24152
s chr3            93395754 1153 + 160039680 AACTCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGACTCT---------------GAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCA--GTCTGAGTC-------------------------AGAC---------------------AATGAATCT-----TCTAG-------------TTCTAGTCA------AAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAA------------------------------------GAACCCTGAGCAGGCTTTTCATTATGGCCAG----------------TCTAAAACATCTGGACA-----ACAAAGCA---------GTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCT---TATGAACAATATGGAAGTCAGCATCAGAA-----------ATCAGGCA-------------------------ACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAG--ACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACA
s HiC_scaffold_1 139037146 1572 - 233722169 aattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaagaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggca------------------------------------gacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGAT-TACAGAAACTGAGAT---ACAAGGACAAAATAGATA

a score=4242
s chr3            93395755 112 + 160039680 ACTCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGATAAGGAC---------------TCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTC
s HiC_scaffold_1 139037183 127 - 233722169 ACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtc

a score=20754
s chr3            93395757  999 + 160039680 TCTCACCACAATCAGTCTGAAGGACAACATCAAAATGTCCAACATGATCAGTCCCAGAGACAAGA--TAAGGACT-------------CTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAG
s HiC_scaffold_1 139037467 1210 - 233722169 TCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccag--agagacagacaa----gaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAAC------AGACAAA------------------CAAGAACAGGGCTTCCACTCTGGTCAGGTA------AGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCAT------TATGG---------------------------CCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=35463
s chr3            93395787 1636 + 160039680 CAAAATGTCCAACATGATCAGTCCCAGAGACAAG---------------ATAAGGACTCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAA------TCTTCTAGTTCTAGTC--AAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAG--ATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGAC-AAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAG------AAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAA--AAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCA--ACAG--GGTCACAAA-----------GACAGACAAGGCCAGAACA-----CTCACCAAGGTCAGAAAGGCAGGCAA-GACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCA---CCTGGGTCAGAAAGGCAGGCATGACCAGA
s HiC_scaffold_1 139036927 1898 - 233722169 CAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAG--AGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCA-----GtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCA-ACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCA-GACCAAACAACAGGAATCAGGAACTTATTATTCAC-------AGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtca------------------------------------gacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGATTACAGAAACTGAGATACAAGGACAAAATAGATACTTCaaagagaatggaaaaacaaaaagcgaCTCATATGTTGACCA--ATCGGGAAAGTCAAGGACACCA-AGTCAACAGACTCTAGAACAGGAAGTGAATCAGAACCAGA

a score=22228
s chr3            93395800  991 + 160039680 ATGATCAGTCCCAGAGAC-AAGATAAGGACT--------------CTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTAT---GAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCA
s HiC_scaffold_1 139037474 1202 - 233722169 ATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaagaTTCACAATAT-gtccaga-----------cagaca------------------gacaaagccAGGGTT------CTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacgg------------------acaaacagacagacaaggACAG------------------GATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCA

a score=19668
s chr3            93395805  915 + 160039680 CAGTCCCAGAGACAAGATAAGGACTCTG-----------AGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAG
s HiC_scaffold_1 139037551 1126 - 233722169 CAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagaca-gaca-agaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAG-----GTAAG-------------------CAGACAAGGACAGGGTT------CCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCA---------------------------------CTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=35283
s chr3            93395821 1511 + 160039680 ATAAGGACTCTGAGAGACATGATACAGATCCTCACTGTGGTCAGTCAGAGACATTCCATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTA---TGAACAATATGGAAGTCAGCATCAGAAATCAG-----GCAACAGTCAGACAGAGAGACAAGGCCAG------------------------------AATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCA-----GAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGC--AGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACT---GGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCG---GACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAG
s HiC_scaffold_1 139036940 1737 - 233722169 ACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAG------------------------------AGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACA-----AGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTA-----------------------TTCAACAAAGCTTGAACAACAATCTAGCTATGACCAG--------------TCTGGAAGACTCACACAAGGCCTTGGCTCTCA------TCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTT---ACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=29552
s chr3            93395878 1821 + 160039680 ATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATC--TTCTAGTTCTAGTCA------AAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGA-TATGTCTTTGCCTTAA-----GTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCA-----TGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCA-----------GATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGT------CAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCG---GACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAG---------------ACAGACAGACAAAGCCAGAATTCAAACT-----GGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACA------------GACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGA--ACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGA------AAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAG--GCAGGCAAGAC----------CAGAGTCCTCACCAGGGTC------AGAAAGGCAGAC---------AAGACCAGAGTTCTCACCAGGGTCAA---------------AGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACA
s HiC_scaffold_1 139037213 2030 - 233722169 ATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAG--AAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTA------------CCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAA-ATCTAG----CACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATG-----ACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAG---------ACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggaca------------------------------------gacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTT---ACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGATTACAGAAACTGAGATACAAGGACAAAATAGATACTTCaaagagaatggaaaaacaaaaagcgaC-----TCATATGTTGACCAATCGGG----AAAGTCAAGGA----CACCA-AGTCA-ACAGAC--TCTAGAACAGGAAGTGAATCAGAACCAGACACAGGGATTCCAGTATAGGGAAAAACAA------CAGCATAGTCACAATG-CATGCAA-GCCAGAGGAGGATCATCAATATCACCAACACAAAC----------TCTTAGCACAAATCCAA----CAAGAAAGGCCA----------CTGTATCACAAAGGAAG------------------TGAGAGGCAACTAGGTAGTAGTGAACAGAGTCACACACAGGTCCAAAC---CAGACAGAGCGAGG------ACAAGGGACAAACCCATCAAGCAGAAGAAGAGCAGGGTCATC------------AAAACTGGAGTGAACACAGCTATCA---GGGTCAGGAAAGTGCATGGGAGGCACAGGATAGGCAAACCCATGAACAGGACCATCCAAAAAAGGCCAGACAAACCTATGAAGATGAGCAAAACCACCAGAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCATCAACA--------GGATAGACA

a score=28254
s chr3            93395878 1289 + 160039680 ATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAA--TGAATCTTC--------TAGTTCTAGT--CAAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAA----------ACATCTGGACAACAAAGCAGTCATGGTCAGTCTGG---AAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGA
s HiC_scaffold_1 139037177 1507 - 233722169 ATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCT------GATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAA------TCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTC--TGAAAATCTAGCACAGGATTC--ACATTATAGTTATTCAA--CAAAGC-TTGAACAACAATC---TAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaagaT------TCACAATATgtccagacagacagacaaagccAGGGTT------------------------------------CTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACT--------ACAGTCAGTCACAGA

a score=31883
s chr3            93395878 1349 + 160039680 ATGGGGACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCA------AAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGG-ATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGG------TCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTC--TTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGAC------AAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGT---GGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCG---GACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACA
s HiC_scaffold_1 139037069 1611 - 233722169 ATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATG-GTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGA------AACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA---CAGAC--TGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCA-GACCAAACAA-CAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTG----GACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTT---ACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCA

a score=32474
s chr3            93395882 1486 + 160039680 GGACTCCCACTATGGCCATTCTGAGAGACAAGA-CACAGATTATAGCTCAGATCAGTCTGAGTCAGACAATGAATCTTCTAGTTCTAGTCAAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTC------ATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCT---TATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAAC------AAGGTCAGAAAGGCAGAAAAGACCAGAGTC----------CTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGT----CAGAAAGGC--AGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACC-------------GGGGTCAGAAA-----------------GGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATT--CAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAG
s HiC_scaffold_1 139036929 1748 - 233722169 GAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACAT-GATCAGTCTAAG--AAACAA-----------------------GATAGGG-----ACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGA------GACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGA------------CTGAGTCTTAAATCTAATAGTGGCCAACAA------AAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCA----CAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGC--CAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=31369
s chr3            93395884 1307 + 160039680 ACTCCCACTATGGCCATTCTGAGAGACAAGACACAGATTATAGCTCAGATCAGTCTGAG---TCAGACAATGAATCTT-------CTAGTTCTAGTCA-AAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGA-TATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTC------ATTATGGCC--AGTCTAAAACATC----TGGACAACAAAGCAGTCATGG------------------TCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGAC------AAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCA
s HiC_scaffold_1 139037147 1533 - 233722169 attcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGAT-----TCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGA-TCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTA-----TTCAACAAAGCT----------TGAACAACA------------------ATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCA------TCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacaga------------------------------------caaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCA

a score=32609
s chr3            93395971 1469 + 160039680 AAAGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGT------CATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTA---TGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAG------AGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAA-GGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACT---GGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTT--CACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAG
s HiC_scaffold_1 139036952 1725 - 233722169 AAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGA------GACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCAC---AGTCCGGGAGGCTG----GACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATggga--agacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=8500
s chr3            93395973 387 + 160039680 AGACTGGGTTATAAATCTAGTCATGAACAGCCCAAAGGTCAAGGATATGTCTTTGCCTTAAGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAA---CAAAG---CAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTA---TGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAG
s HiC_scaffold_1 139038287 390 - 233722169 AGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacag------acagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=32361
s chr3            93396033 1443 + 160039680 AGTCAGTCTAAGAACCCTGAGCAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAG---------TCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTA---TGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGT----CAGAAAGGC--AGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGG-------------GTCAGAAA-----------------GGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATT--CAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAG
s HiC_scaffold_1 139036942 1735 - 233722169 AGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGA---------AACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGC--CAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=32980
s chr3            93396054 1458 + 160039680 CAGGCTTTTCATTATGGCCAGTCTAAAACATCTGGACAACAAAGCAGTCATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCT---TATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCA----GACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGT----CAGAAAGGC--AGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGG-------------GTCAGAAA-----------------GGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAG
s HiC_scaffold_1 139036927 1750 - 233722169 CAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaata----acaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=32436
s chr3            93396102 1446 + 160039680 CATGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCT---TATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAG--AAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGA------CCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGT----CAGAAAGGC--AGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGG-------------GTCAGAAA-----------------GGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACT---GGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAG
s HiC_scaffold_1 139036939 1738 - 233722169 CACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTA--CCTCA----GATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=11192
s chr3            93396104 328 + 160039680 TGGTCAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTAT---GAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGA------------------------------------GTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAG
s HiC_scaffold_1 139038310 367 - 233722169 TGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=27070
s chr3            93396108 1452 + 160039680 CAGTCTGGAAGATTCCGAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTTATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAG--ACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGA-------CAGTCAAGG--------ACAGAGTTTTCATTTTGATCAGGCAGGC--AAAGAAGTCCAGGGTTCTCACC-------------AGGGTCAGACAGACAGTCAAGGCCAGAGT-TCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACA---------AAGACAGACAAGGCCAGAAC---------ACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTC--ACCAGGGTCAGA----------AAGGCAGACAAGACCTGAGTTCTCACCAGGGTC-AGAAAGGCAGAC--------AAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAT
s HiC_scaffold_1 139037551 1693 - 233722169 CAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaagaTTCACAAT---ATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGAT-TACAGAAACTGAGAT---ACAAGGACAAAATAGAT------------ACTTCaaa--gagaatggaaaaacaaaaagcgaC-----TCATATGTTGACCAATCGGG----AAAGTCAAGGA----CACCA-AGTCA-ACAGAC--TCTAGAACAGGAAGTGAATCAGAACCAGACACAGGGATTCCAGTATAGGGAAAAACAACAGCATAGTCACAATG--CATGCAAGCCAGAGGAGGATCATCAATATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGGCCACTGTATCACAAAGGAAGT-----GAGAGGCAACTAGGTAGTAGTGAACAGAGTCACACACAGGTCCAAACCAGACAGAGCGAGGACAAGGGACAAACCCATCAAG--CAGAAGAAGAG-------------------CAGGGTCATCAAAACTGGAGTGAACACAGCTATCA---GGGTCAGGAAAGT--GCATG---GGAGGC----ACAGGATAGGCAAACC---CATGAACAGGACCATCCAAAAAAGGCCAGACAAACCTATGAAGATGAGCAAAAC---------CACCAGAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCA------TCAACAGGATAGACAT

a score=24625
s chr3            93396124  823 + 160039680 GAAAAGATTCTTATTCTAGTCAAACCAGTCAACAAGAATCAGATTCTT---ATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCA
s HiC_scaffold_1 139037597 1083 - 233722169 gacaagaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACT--------ACAGTCAGTCA

a score=35216
s chr3            93396172 2301 + 160039680 ATGAACAATATGGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAG------AGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAA-GGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACT-----GGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCA-GAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTG---GTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAAACAGGCAC--TCTCTAGGGACTGATAGAACAAGAAGAGACTC-ATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCAGCAGAATTCAAGAGAAGAAGTGCGTCAAACCCAGAGTCAGAGATCCCATGATAGAAGGGAGCAGCAAATCCAGCAGCAGACATGGAAG--CCTAAAGAGGACAACCAACACAAACTCTTAGCTCAGGTACAGCAAGAGCCATACTCCTATGAAGAATATGATTGGCAATCACAGAGCAGTGAGCAGGACCACTGCGGGGAGGAAGAATATCAAGACTGGGATAGACACAGTGTTGAGGATCAGGAAAATCTGTATGAGATGCAGAACTGGCAAACTCATGAAGAGGAACAAAGCCATCAAACAAGTGATAGGCAAACCCATGTAGACGAGCAGAACCAGCAGAGACAACACAGGCAAACTCATGAAGAAAATCACGATCATCAACATGGTAGACATCATGAAG---------ATGAGCACAATCACAGGAGACAAGACCATCATCAACAAAGGGAGAGACAAA
s HiC_scaffold_1 139036976 2398 - 233722169 ATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtca-agccTCTACC----TCAGATCA-CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCAC---AGTCCGGGAGGCTG----GACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCA-------CAGATTACAG--------------AAACTGAGATACAAGGACAAAATAGATACTTCaaagagaatggaaaaacaaaaagcgaC-----TCATATGTTGACCAATCGG-----------------------------------GAAAGTCAAGGACACCAAGTCA------------ACAGAC--TCTAGAACAGGAAGTGAATCAGAACCAGACA------------CAGGGATTCCAGTATAG------GGAAAAACAACAGCATAG---TCACAATGCATGCAAGCCAGAG------------GAGGATCATCAATATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGGCCACTGTATCACAAAGGAAGTGAGAGGCAACTAGGTAGTAGTGAACAGAGTCACACACAG-------GTCCAAACCAGA--CAGAG---CGAGGAC--AAGGGACAAACCCATCAAGCAGAAGAAGAGCAGGGTCATCAAAACTGGAGTGAACACAG----CTA--TCAGGGTCAGGAAAGTGCA------TGGGAGGCACAGGATAGGCAAACCCA------TGAACAGGACC------------------ATCCAAAAAAGGCCAGACAAACCTATGAAGATGAGCAAAACC---ACCAGAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCATCAACAGGATAGACATATCAATGAAGATGAACAGAAC------------CATAGGCAAACCCACATAAAGGGTTATAATCATCATCA------ACAGCAGGATGGTCAAACGCATGAGGAAAAATACAGGTATCAAGGGTCTCAGAATCAAAGAAGACAACAGA

a score=16009
s chr3            93396183 357 + 160039680 GGAAGTCAGCATCAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAG
s HiC_scaffold_1 139038320 357 - 233722169 GAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=30931
s chr3            93396192 2304 + 160039680 CATCAGAAATCAGGCAA-CAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATA-------GTTCATACCATGAGCAGACAGAG--------------------GGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACA------GCCTAAGTTCTCACCAGGGCCAGACAG-----------------------ACAGTCAAGG--------CCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAA---------ACAGGCACTC------TCTAGGGACTGATAGAACAAGAAGAGACTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCA---GCAGA--ATTCAAGAGAAGAAGTGCGTCAA--ACCCAGAGTCAG-AGATCCCATGATAGAAGGGAGCAGCAAATCCAGCAGCAGACATGGAAGCC----TAAAGAGGACAACCAACACAAACTCTTAGCTCAGGTACAGCAAGAGCCATACTCCTATGAAGAATATGATTGGCA---------ATCACAGAG-CAGTGAGCAGGACCACTG---CGGGGAGGAAGAATATCAAGACTGGGATAGACACAGTGTTGAGGATCAGGAAAATCTGTATGAGATGCAGAACTGGCAAACTCATGAAGAGGAACAAAGCCATCAAACAAGTGATAGGCAAACCCATGTAGAC------GAGCAGAACCAGCAGAG---------------------ACAACACAGGCAAACTCATGAAGAAAATCACGATCATC---AACATGGTAGACA---TCATGAAGATGAGCACAATCACAGGAGACAAGAC------------------------CATCATCAACAAAGGGAGAGACAAACCCATGAAGAAAAGGAGAAGTAT
s HiC_scaffold_1 139036795 2473 - 233722169 CACCATAAGCTAGATAAGAAGTCATATAGAGATA-------AAACCTCACAGCAAGACAAGAGACATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGA-CCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAG--------------------------------ACAGACAAGGACAGAGTTCCCATGGTGGCCAGA--------------------------------CAGAAA----GACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCC------------------------------------------------------------------------ATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtca------------------------------------gacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcag---------------acagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGATTACAGAAACTGAGATACAAGGACAAAATAGATACTTCaaagagaatggaaaaaca--aaaagcgaCTCATATGTTGACCAATCGGGAAA--------GTCAAGGACACCAAGTCAACAGACTCTAGAACAGGA------AGTGAAT-CAGAACCAGACACAGGGATTCCAGTATAGGGAAAAACAACAGCATAGTCACAATGCATGCA-------AGCCAGAGGAGGATCATCAATATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGGCCACTGTATCACAAAGGAAGTGAGAGGCAACTAGG-TAG---TAGTGAACAGAGTCACACAC---------AGGTCCAAACCAGACAGAGCGAGGACAAGGGACAAACCCATCAAGCAGAAGAAGAGCAGGGTCATCAAAACTGGAGTGAACACAGCTATCAGGGTCAGGAAAGTGCATGGGAGGCACAGGATAGGCAAACCCATGAA------CAGGACCATCCAAAAAAGGCCAGACAAACCTATGAAGATGAGCAAAACCACCAGAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCATCAACAGGATAGACATATCAATGAAGATGAACAGAACCAT

a score=77387
s chr3            93396195 3329 + 160039680 CAGAAATCAGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTG-GGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGT----CAGAAAGGC--AGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGG-TCAAGACCAGA--ATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGAACAAGAAGAGACTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCAGCAGAATTCAAGAGAAGAAGTGCGTCAAACCCAGAGTCAGAGATCCCATGATAGAAGGGAGCAGCAAATCCAGCAGCAGACATGGAAGCCTAAAGAGG---------ACAACCAACACAAACTCTTAGCTCAGGTACAGCAAGA---GCCATACTCCTATGAAGAATATGATTGGCAATCACAGAGCAGTGAGCAGGACCAC---------------------TGCGGGGA---------------------GGAAGAA---------TATCAAGACTGGGATAGACACAGTGTTGAGGATCAGGAAAATCTGTATGAGATGCAGAACTGGCAAACTCATGAAGAGGAACAAAGCCATCAAACAAGTGATAGGCAAACCCATGTAGACGAGCAGAACCAGCAGAGACAACACAGGCAAACTCATGAAGAAAAT---CACGATCATCAACATGGTAGACAT---CATGAAGATGAGCACAATCACAG---------------GAGACAAGACCATCATCAACAAAGGGAGAGACAAACCCATGAAGAAAAGGAGAAGTATCAAGGAGGCCAAGACCAATCCAGAAGCTTCCCCAACAGAGAAAAATCCCACATGAGTGAAGATGACCAGTGTGAAGGGCCCCAGGGAAGACGTTTCCATCCAACTCATGGTGGTGGAAAGTCCCAAAGAAGAGAAAAATCTGGAAACCACCCTACCAAACCAGCCAA---CTATTCCAGCCCTTTGTACGACTATGTCCAAGAACAGGCAGCCTATCAGTACTAGGCTGTGTGAGCATCAAGATTAAAGCAGTTTGAAGCTAAAGAAGAAACCTACATGCCAA-TTCATCTTTACTTGTGTTTAAAAGGTTGAAATTATATGTCATTTTTCTCTTTTTCGTCAGTCTACAAGAATGCTTTGGAAGACTTGTACTCACTTTTTG-AAATTTCAATTCCTTGAATAGCAATTGCATGGTTAGTTGGTTGGGTGGAGTA--------AATTAGGGGAACTAATCAATCTTCATTTCAATCACTTTGTGGATTTGAATCATCGCTAGTTTATTTTCAGTTTAGGTGATACCTGGTTGAATCACTGAATGGCAGAGCAC-TCTCCCTGAAATTCAGAAACAGGGAAAAGTACACTGAAAACTTATACTATATTTGAAGAAAGGGATTTTGGACTTTGGTGAGCATTGGCTCTTATGGGTAAAATATCAGGAACCACAAGCTTCATGGTCTAGACTTGGATG--AAACAGTGAGAAGCCCCTAGGGGAGCTAGAGATCAAGGAGAGATTCTCTGATATTAGCATCTCTGATGCCTAGGCTCCTCTTCC-------------------TCCATTGATGGGTCATGAGA--ATTGACCAGACCTACTAAA---------------------CCATCACACAGAA-AGAAGATATAT---ATCTGTTTGAAGATTCCTGGTAGCCCAAATGTTCAA---------------CTCTGAAAACCTTTC-CAACAAAGACCATGTGTAGAAC-ATGAAATTATATTAAAATACTCAATAAATGATTGGTGAGCAATGATATTCATGTTTTTTTCCTTTCTTCAGTGTGGAAATGTGA------CTTGCTATGGACCATATTCTAAGAATAAGTCTTCATTTCTTA
s HiC_scaffold_1 139036927 3412 - 233722169 CAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGAT-AGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGT---------CCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagaca------agaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaac------------------------------------agacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAG--------------------------------ACAGACAAGGACAGAGTTCCCATGGTGGCCAGA--------------------------------CAGAAAGACAACGGTG----GAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaa------------------------------------gatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTC------------------------------ACAGTCAAG------------------------------------------GTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGATTACAGAAACTGAGATACAAGGACAAAATAGATACTTCaaagagaatggaaaaacaaaaagcgaCTCATATGTTGACCAATCGGGAAAGTCAAGGACACCAAGTCAACAGACTCTAGAACAGGAAGTGAATCAGAACCAGACACAGGGATTCCAGTATAGGGAAAAACAACAGCATAGTCACAATGCATGCAAGCCAGAGGAGGATCATCAATATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGGCCACTGTATCACAAAGGAAGTGAGAGGCAACTAGGTAGTAGTGAACAGAGTCACACACAGGTCCAAACCAGACAGAGCGAGGACAAGGGACAAACCCATCAAGCAGAAGAAGAGCAGGGTCATCAAAACTGGAGTGAACACAGCTATCAGGGTCAGGAAAGTGCATGGGAGGCACAGGATAGGCAAACCCATGAACAGGA------CCATCCAAAAAAGGCCAGACAAACCTATGAAGATGAGCAAAACCACCAGAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCATCAACAGGATAGACATATCAATGAAGATGAACAGAACCATAGGCAAACCCACATAAAGGGTTATAATCATCATCAACAGCAGGATGGTCAAACGCATGAGGAAAAATACAGGTATC------------------------------------------------------------------------AAGGGTCTCAGAA------------------------------------TCAAAGAAGACAACAGAGTGTAGGTCACCCTACCAAGGCAGCTAATGTTCCTCCCAATCCCTTCTATGGCTATGTGAAAAAGCAGAAATCACATCAGTACTAAGCTGTGTGAGCATCCAAGCT-AAGAAAcatgaaatcaaagaataaacCTAGACATTAAGTTCATCTTTACTTCTGTATGAAATGTTATAAGTGTTTGTCTTCCCTCTACTATTTGTCTACCTTCAAGAATGCTCCTGAGGATTAGTATTCTCTTttggtgcaattcagttctttgaGCAACAGTTAAGGGGCTTTCTGGTTGGATGTAATATAAGTAACAATTATGtg-attaatta--tttaattttgatcattttgggAATtaaaatcattcttggtttgctCTCTGTACAGGTTAATCGTGATTGGGTTATTGAAAGGTAGAACACATCTccttaaaattcaaaaaca-gGAAAGGTACTTTGaagatttacattttaaccaaacAAAGGAAACTTGATTTTTAGTGAGTTTTGGCTCATGTAGATAAAACATAAGGGATTGCAAGCTGCATATTCTAGACCAGAATGCAACACACTGAGAGGCTGCTAAGGAAGCCAGGGACCACAGAGTTCATCTCTGCTCTTGCCATCTATCTTGTTTAGTCTCTGGTCCCTCACCAGAGAGAGTGACTATCCAGTGACCAACTATTATAAGATTGGCAGGATCCATTCCATTACAATGCCTCTCTAATTTCCAATCACATAAAATAGAAAGTACATGTCATCTCTATATAGATCCCCAAGGGCCAAAATTGTCAAGTCATAGCTCCCCTGTTCTGAAAACCTTTTGCAGGAAAATCAACATGCAAAACAATGGAATTATATTAAAGCACCAAATAAATGATTGTTGAACAGTGACTTTGGTGGCTCTTTTCCATC----ACTTGGAATTATGCTATCTTCATTTTGTGGGTCATTTTCCTAGAATAATACCTCATTTTATA

a score=10725
s chr3            93396203 886 + 160039680 AGGCAACAGTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGC-CAGACAAATAAAA--------------------AAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTC-------ACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGA------CCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGAC------------------CAGAGT------TCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGG----TCAGAAAGGC--AGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGA-CAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCA--GGCAGGCAGA
s HiC_scaffold_1 139036842 927 - 233722169 AGACAAGAGACATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGA-TAGCGACTTCTTCTATGACcattttgagaaa------caaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTC------TCATCAGACCAAACAACAGGAATCAGGAACTT-ATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaag------aTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTa----cggacaaacagaca--gacaaggACAGGATTTCCATTAtggtcagacaga

a score=17891
s chr3            93396211 365 + 160039680 GTCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAG
s HiC_scaffold_1 139038312 365 - 233722169 GCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=31405
s chr3            93396212 2193 + 160039680 TCAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAG--AAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAG------AGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAA-GGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAG--ACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACA-GTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTG----ATCAGGCAGGCAGAGAAGGCCAGAGTTCTCA---CCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGAACAAGAAGAGACTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTC--AGCAGAATTCAAGAGAAGAAG-----TGCGTCAAACCCAGAGTCAGAGATCCCATGATAGAAGGGAGCAG---CAAATCCAGCAGCAGACATGGAAGCCTAAAGAGGACAACCAACACAAACTCTTAGCTCAGGTACAGCAAGAGCCATACTCCTATGAAGAATATGATTGGCAATCACAGA-GCAGTGAGCAGGACCACTGCGGGGAGGAA---GAATATCAAGACTGGGATAGACACAGTGTTGAGGATCAGGAAAATCTGTATGAGATGCAGAACTGGCAAACTCATGAAGAGGAACAAAGCCATCAAACAAGTGATAGGCAAACCCATGTAGACGAGCAGAACCAGCAGAGACAACACAGGCAAACTCATGAAGAAAATCACGATCATCAACA
s HiC_scaffold_1 139036980 2293 - 233722169 TCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCAC---AGTCCGGGAGG----CTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGA------------------------------------CAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggca------------------------------------gacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGAT-TACAGAAACTGAGAT---ACAAGGACAAAATAGATACTTCaaag--agaat-------------ggaaaaacaaaaagcgaC-----TCATATGTTGACCAATCGGGAAAGTCAAGGACACCA-AGTCAACAGACTCTAGAACAGGAAGTGAATCAGAACCAGA-----CACAGGGATT--CCAGTATAGGGAAAAACAACAGCATAGTCACAATGCATGCA------------------AGCCAGAGGAGGATCAT--------CAAT-------ATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGGCCACTGTATCACAAAGGAAGTGAGAGGCAACTAGGTAGTAGTGAACAGAGTCACACACAGGTCCAAACCAGACAG---AGCGAGGACAA--GGGACAAACCC----ATCAAGCAGAAGAAGAGCAG----------------------GGTCATCAAAACTGGAGTGAACACAGCTATCAGGGTCAGGAAAGTGCATGGGAGGCACAGGATAGGCAAA---CCCATGAACAGGACCATCCAAAAAAGGC------CAGACAAACCTATGAAGATGAGCAAAACCACCAGAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCATCAACAGGATAGACATATCAATGAAGATGAACAGAACCATAGGCA

a score=14460
s chr3            93396213 291 + 160039680 CAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAG
s HiC_scaffold_1 139038386 291 - 233722169 cagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=26456
s chr3            93396213  823 + 160039680 CAGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATT--CACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAG---------------ACCGACAGCCAAGGCCAGAATTCAAACT
s HiC_scaffold_1 139037617 1103 - 233722169 cagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATggga--agacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCACAGATTACAGAAACTGAGATACAAGGACAAAATAGATACT

a score=18998
s chr3            93396214 398 + 160039680 AGACAGAGAGACAAGGCCAGAATTCTCAGTATGGCCAGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAG
s HiC_scaffold_1 139038279 398 - 233722169 AGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=18929
s chr3            93396250 398 + 160039680 AGACAAATAAAAAAGGACATAGTTCATACCATGAGCAGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAG
s HiC_scaffold_1 139038279 398 - 233722169 AGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=18760
s chr3            93396286 398 + 160039680 AGACAGAGGGACAAGGTCAGAGTTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAG
s HiC_scaffold_1 139038279 398 - 233722169 AGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=7524
s chr3            93396308 160 + 160039680 TTTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAG
s HiC_scaffold_1 139038517 160 - 233722169 TTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=15018
s chr3            93396309 530 + 160039680 TTCCATTATGGCCAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCA
s HiC_scaffold_1 139037821 791 - 233722169 TTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCA----CCATGGTCAGACAGACA

a score=24922
s chr3            93396321 1155 + 160039680 CAGAAAGGCAGAAAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAG-AGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGA------CCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGAC------AAGGCCTGAGTTCTCACCAGGGC------------------------------CAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAG
s HiC_scaffold_1 139036852 1164 - 233722169 CATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGC---ACAGACAGAGAACAGCAGCAGTCGTGTGCTGGT---GAAAGACAG----------AATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATC------------ACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=22685
s chr3            93396333 1071 + 160039680 AAAGACCAGAGTTTTCAACAAGGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAG--AAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCA----GAAAGGCAGGCAAGA--CCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCA------GGGTCAGAAA---------GGCAGACAA---GACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAG---TGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCT---AAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGG-------------ACAGAC----AGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAG
s HiC_scaffold_1 139036922 1094 - 233722169 AAAGAC-AGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAG---CACAGGATTCACATT--ATAGTTATTCAA---CAAAGCTTGAACAACAATC---TAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATC--AGACCAAAC----AACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=16306
s chr3            93396354 366 + 160039680 GGTCAGAAAGGCAGAAAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAG
s HiC_scaffold_1 139037650 366 - 233722169 GATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=29076
s chr3            93396369 2196 + 160039680 AAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTG-GGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAG--AAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGA------CCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGAC------------------CAGAGT------TCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGT-----TCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGAC-AGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATT--CACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGA---ACAAGAAGAGA-CTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCAGCAGAATTCAAGAGAAGAAGTGCGTCAAACCCAGAGTCAGAGATCCCATGATAGAAGGGAGCAGCAAATCCAGCAGCAGACATGGAAGCCTAAAGAGGACAACCAACACAAACTCTTAGCTCAGGTACAGCAAG-AGCCATACTCCTATGAAGAATATGATTGGCAATCACAGAGCAGTGAGCAGGACCACTGCGGGGAGGAAGAATATCAAGACTGGGATAGACACAGTGTTGAGGATCAGGAAAATCTGTATGAGATGCA-GAACT-----GGCAAACTCATGAAGAGGAACAAAGCCATC---AAACAAGTGATAGGCAAACCCATGTAG--ACGAGCAGAACCA------------------GCAGAGACAACACA---GGCAAACTCAT------GAAGAAAATCACGATCATCAACATGGTAG-----ACATC-ATGAAGATGAGCACAAT----------CACAGG--AGACAAGACCAT---------CATCAACAAAGGGAGAGACAAACCCATGAAGAAAAGGAGAAGTATCAAGGAGGCCAAGAC---CAATCC-----AGAAG--------CTTCCCCAACAGAGAAAAATCCCACATGAGTGAAGATGACCAG
s HiC_scaffold_1 139036922 2340 - 233722169 AAAGAC-AGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGAT-AGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCA-----ACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTT-ATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaag------aTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAG--------------------------------ACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagaca------------------------------------------------------------------------gacagacaaggacAGGGTTCCCATcgtggaca------------------------------------gacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATggga--agacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAG---------------ACAGACAGTCACAGTCA----AGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTC--ACAGATTACAGAAACTGAGATACAAGGAC-----AAAATAGATACTTCaa----------------------agagaatggaaaaacaaa--aagcgaCTCATATGTTGACCAATCGGGAAAG-------------------TCAAGGACACCAAGTCAACAGACTCTAGAACAGGAAGTGAATCAGAACCAGACA-CAGGGATT----CCAGTATAGGGAAAAACAACAGCATAGTCACAATGCATGCAAGCCAGAGG---AGGATCATCAATATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGGCCACTGTATCACAAAGGAAGTGAGAGGCAA--CTAGGTAGTAGTGAACAGAGTCACACACAGGTCCAAACCAGACAGAGCGAGGACAAGGGACAAACCCATCAAGCAGAAGAAGAGCAGGGTCATCAAAACTGGAGTGAACACAGCTATCAGGGTCAGGAAAGTGCATGGGAGGCACAGGATAGGCAAACCCATGAACAGGACCATCCAAAAAAGGCCAGACAAACCTATGAAGATGAGCAAAACCACCA---GAGTCAAGACAAGCAAACCTGGGAAGAAGATCAACATCATCATCAACAGGATAGA----CATATCAATGAAGATGAACAG

a score=16307
s chr3            93396435 404 + 160039680 GGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCA
s HiC_scaffold_1 139037557 394 - 233722169 GGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTA----tggtcagacagaca

a score=29499
s chr3            93396442 1466 + 160039680 AAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAG-TGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGT-----TCTCACCAGGGCCAGACCGACAGCC------AAGGCCAGAATTC-------------AAACTGGCATCGGACAG---------ACAGTCAAGGA--------CAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAG
s HiC_scaffold_1 139036922 1647 - 233722169 AAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAA-ATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACA------GACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCA-----ACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacaga------caagaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGA--------------------------------CAGAA----------------------------------------AGACAACGGTGGAGATCCCACTAtggtca------------------------------------gacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAG

a score=23777
s chr3            93396478 1106 + 160039680 AAGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAG-TCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAG
s HiC_scaffold_1 139036922 1094 - 233722169 AAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA--CAGACTG---AGTCTTAAATCTAA--TAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=25717
s chr3            93396493 1485 + 160039680 ACCGGGGTCAGAAAGGCAGACAAGACCA-GAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAG-AGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAG-TCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGG------CAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGAT---------------------TGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGA---ACAAGAAGAG
s HiC_scaffold_1 139036844 1707 - 233722169 ACAAGAGACATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGCACAGA----CAGAGAACAGCAGCAGTCGTGTGCTGGT---GAAAGACAGA----------ATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtc-aagccTCTACC----TCAGATCACAGACTGAGTCTTAAATCTAA--TAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCA-----ACAAAGCTTGAAC------------------AACAATCTAG-------------CTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGA-----CCAAACAACAGGAATCAG-GAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaag------aTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAA----TTCTCACTGtggtcagacagacagacaagaacaG

a score=27682
s chr3            93396514 1399 + 160039680 AAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAG------AAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGA
s HiC_scaffold_1 139036922 1616 - 233722169 AAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATC------ACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCA-GACCAAACA-ACAGG--AATCAGGAACTTA--TTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacaga------caagaTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCA------------------------------------GACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacaga

a score=28268
s chr3            93396543  861 + 160039680 GGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAA--TTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAG
s HiC_scaffold_1 139037557 1120 - 233722169 GGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGG--TCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=27810
s chr3            93396550 1382 + 160039680 AAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCCCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACT---GGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAAT
s HiC_scaffold_1 139036922 1596 - 233722169 AAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACA------GACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAA--------------------------------CAGAAAGACAAGGA----CAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagaga---gacaaagtcAGAAT

a score=25238
s chr3            93396601 1189 + 160039680 ACCAGGGTCAGAAAGGCAGACAAGACCA-GAGTCCCCACCAGGGTCAGAAAG---------GCAGGC-----------AAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGAC-AAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACA
s HiC_scaffold_1 139036844 1162 - 233722169 ACAAGAGACATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA--CAGACTGAG----TCTTAAATCTAATAGTGGCCA-ACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGAC-----------TCACA-------------------CAAGGCCTTGGCTCTCATCAGA--CCAAACAACAGGAA---TCAGGA-ACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCA

a score=25654
s chr3            93396637 1199 + 160039680 ACCAGGGTCAGAAAGGCAGGCAAGACCA-GAGTTCTCACCAGGGTCAGAAAG---------GCAGGC-----------AAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAG-TCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGG---CAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATT--CACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAG
s HiC_scaffold_1 139036844 1172 - 233722169 ACAAGAGACATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCA------CAGACTGAGTCTTAAATCTAA-TAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAA-----CAAAGCTTGAA-------------------------CAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCA--GACCAAACAACAGGAATCAGGAACTTATTATTCAC-------AGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGC--CAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=26589
s chr3            93396723  861 + 160039680 GGCAGACAAGACCAGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATT--CAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAG
s HiC_scaffold_1 139037557 1120 - 233722169 GGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGC--CAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCAGACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAG

a score=26353
s chr3            93396745 1127 + 160039680 ACCAGGGTCAGAAAGGCAGACAAGACCA-GAGTTCTCACCAGGGTCAAAGAGAG--------------------GGTCAAGACCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCA-----------------------------GACAGACAG-TCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAG---------GTCAGAAAGGC--AGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGG---CAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAG
s HiC_scaffold_1 139036844 1172 - 233722169 ACAAGAGACATGAAGTAACACAAAACCGTAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCA-----ACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGA--CCAAACAACAGGAATCAGGAACTTATTATTCAC---AGTCCGGGAGGCTGG----ACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=24902
s chr3            93396869 1039 + 160039680 TGGACACAGCCTAAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAAT-TCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTT-TGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAG------GCCAGAGTTCACATTGGCATCAGACAGACAGGCAAG-----GCCAGAGTTCTCA-ACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGA----------AAGGCAGGC--AAGACCT------GAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAG------AGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGG-------------GTCAGAAA-----------------GGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAG
s HiC_scaffold_1 139036917 1099 - 233722169 TGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATG-ATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAG-ATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=23674
s chr3            93396880 1033 + 160039680 TAAGTTCTCACCAGGGCCAGACAGA---------CAGTC-----------AAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGCCAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAG------GCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAG----AAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAG------AGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGG-------------GTCAGAAA-----------------GGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAA--TTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGA
s HiC_scaffold_1 139036872 1077 - 233722169 TAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccT------CTACCTCAGATCA------CAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCA----CAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGG--TCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacaga

a score=19294
s chr3            93396977 936 + 160039680 TGGACAAGGCCTGAGTTCTCACCAGGGCCAGACCGACAGCCAAGGCCAGAAT-TCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTT-TGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCA--CAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTC------CTCACCAGGGTCAGAAAGGCAGGCAAG-----ACCAGAGTCCTCA-CCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCA----------------------GAAAGGCAGGCATGACCAGAGTCCTCACCAGGGT----CAGAAAGGC--AGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACC-------------TGGGTCAGAAA-----------------GGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGA
s HiC_scaffold_1 139036917 996 - 233722169 TGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATG-ATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAG-ATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCA----CAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGA

a score=6378
s chr3            93397012 148 + 160039680 ACAGCCAAGGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAG
s HiC_scaffold_1 139037732 148 - 233722169 acagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAG

a score=18523
s chr3            93397038 510 + 160039680 CATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAG
s HiC_scaffold_1 139037512 504 - 233722169 CATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaag------aTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAAGACAAAGCCAGAGGTCTCACTATGGGCAG

a score=17632
s chr3            93397051  971 + 160039680 GTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAG--AAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAG----------AAAGGCAGGCAT--------GACCA------GAGTC------CTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCAC------------------CTGGGTCAGAAAGGCAGGCATGACCAG------------------------AGTCCTCACC-------------GGGGTCAGAAA-----------------GGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGAT---------------------TGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGA---ACAAGAAGAGA-CTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCAG
s HiC_scaffold_1 139036919 1079 - 233722169 GTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGA----GTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCA---------GACAGAAAGACAAAGCCAG

a score=15928
s chr3            93397089 824 + 160039680 GAAGTCCAGGGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAAT-TCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAG--AAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCA----GAAAGGCAGGCATGA--CCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAG-----ACCTGAGTTCTCA-CCAGGGTCAGAAA---------GGCAGACAA---GACCAGAGTC----------CTCACCTGGGTCAGAAAGGCAGGCA--------------------------------TGACCAG------AGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGG-------------GTCAGAAA-----------------GGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGA
s HiC_scaffold_1 139036921 920 - 233722169 GAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATG-ATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaagaT------TCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGA

a score=13202
s chr3            93397126 882 + 160039680 AAAGCCAGAATTCAAACTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAAAGAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAG--AAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTT------CTCACCAGGGTCAGAAAGGCAGACAAGAC------------------CAGAGTCCTCACCTGGGT---------CAGAAAGGC---AGGCATGAC------------------------------CAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAG------AGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGG-TCAAGA--TCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGAT---------------------TGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGAACAAGAAGAGACTCATATGTTGAACAATCTGGAAGGTCAG
s HiC_scaffold_1 139036922 963 - 233722169 AAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACA--CAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGT----CCGGGAGGCTGGACCAGGACTCAG-----GCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAG

a score=11767
s chr3            93397197 828 + 160039680 GAAGTCCAGGGTTCTCACCAGGGTCAGACAGACAGTCAAGGCCAGAGTTCACATTGGCATCAGACAGACAGGCAAGGCCAGAGTTCTCAACAGGGTCACAAAGACAGACAAGGCCAGAACACTCACCAAGGTCAGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAG----AAAGGCAGG--------------------------------CAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAG----------AAAGGCAGGCAT--------GACCA------GAGTC------CTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCA---AAGAGAG---------------GGTCAAGATCAG-------AATTCACACTGG-----------CATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGATTGGAAAAACTGAAAATCAAGGGCAAAACAGGCACTCTCTAGGGACTGATAGAACAAGAAGAGACTCATATGTTGAACAATCTGGAAGGTCAGTAAAACTAAGTCAGCAG
s HiC_scaffold_1 139036921 900 - 233722169 GAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGAGACAAGATTGCGATTTCCACCATGGTCAGTTTGAGAGACAAGATAGCGACTTCTTCTATGACcattttgagaaacaaaataacaattcCCACCATGATCATTCTGAGAAACAAGATAAAGACTTCCACTATGATCAGTCTGAGAGTCAAGATAGAGATTCCCACCATGGTCAGTCCAAGACACAAGACTTGGATTCCCACCATGACCAATCTGAGAAACAAGAAATAAGTTATAGCTCTGATCAGtctaaaagaaaaagtcaagccTCTACCTCAGATCACAGACTGAGTCTTAAATCTAATAGTGGCCAACAAAAAGACCAAGGACATATCTTTGTCTTAAATCAGTCTGAAAATCTAGCACAGGATTCACATTATAGTTATTCAACAAAGCTTGAACAACAATCTAGCTATGACCAGTCTGGAAGACTCACACAAGGCCTTGGCTCTCATCAGACCAAACAACAGGAATCAGGAACTTATTATTCACAGTCCGGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaag------aTTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTa---------------cggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacag-acaaggacAGACTTCT--------CATCATGGCCAGACAGAAAGACAAAGCCAGAAG

a score=16667
s chr3            93397330 437 + 160039680 AGAAAGGCAGGCAAGACCTGAGTCCTCACCAGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACA
s HiC_scaffold_1 139038279 401 - 233722169 AGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacagacagacaaggacAGGGTTCCCATcgtggacagacagacagacaagatcAAAGTTTCCATTAtggtcagacagacagacaaggacAGAGTTCCTACCATGAGCAGACAAACAGACAAGGACATAGTTACCACCATgggaagacagagagacaaagtcAGAATTCTCACTGtggtcagacagacagacaagaacaGGGTTCCCACTATGGTCAGATAAGCAGACAAGATCAGGGTTCCCACCATGGTCA------------------------------------GACAGACAGTCACAGTCAAGGTTCCTATCatgggcagacagacagacaaggacAGAGTTCCTACTACAGTCAGTCA

a score=19203
s chr3            93397479 436 + 160039680 GGCAGACAAGACCTGAGTTCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTCCTCACCTGGGTCAGAAAGGCAGGCATGACCAGAGTCCTCACCGGGGTCAGAAAGGCAGGCAAGACCAGAGTCCTCACCAGGGTCAGAAAGGCAGACAAGACCAGAGTTCTCACCAGGGTCAAAGAGAGGGTCAAGATCAGAATTCACACTGGCATCGGACAGACAGACAAGGACAGAGTTTTCATTATGGTCAGACAGGTGGACAAGGCCTGAGTTCTCACCAGGGCCAGACAGACAGTCAAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGA
s HiC_scaffold_1 139037557 430 - 233722169 GGGAGGCTGGACCAGGACTCAGGCTATGaccagagagacagacaaga------TTCACAATATgtccagacagacagacaaagccAGGGTTCTTGCTATGATCAAACAGACAAACAAGAACAGGGCTTCCACTCTGGTCAGGTAAGCAGACAAGGACAGGGTTCCCACTacggacaaacagacagacaaggACAGGATTTCCATTAtggtcagacagacagacaaggacAGACTTCTCATCATGGCCAGACAGAAAGACAAAGCCAGAAGTTTCACTATGGTCAGACAGATGGACAAGAACAGGGTTCCCATTATGGCCAAACAGAAAGACAAGGACAGGATTTCCACTATGGCCAAACAGACAGACAAAGCCAGAGTTCTCATTAtggtcagacagacagacaaggacAGATTTCCCATAATGGCCAGACAGAAA

a score=4338
s chr3            93397736 179 + 160039680 ACAAGGCC-TGAGTTCTCACCAGGGCCAGACAGA---------CAGTC-----------AAGGCCAGAATTCACAGTGGCATCGGACAGACAGTCAAGGACAGAGTTTTCATTTTGATCAGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGAGA
s HiC_scaffold_1 139036863 200 - 233722169 ACAAAACCGTAAGTTTCCAAGAGGCACAGACAGAGAACAGCAGCAGTCGTGTGCTGGTGAAAGACAGAATTCCCACCACAGTGAGTCTGAAAGACAAGGTCATAATGTCCAACATGATCAGTCTAAGAAACAAGATAGGGACTCCCACTATGATCATTCTGAGAGACAAGATAAAGACTTTCACTATGGTCAGCCCGAGA

a score=4566
s chr3            93397834 79 + 160039680 AGGCAGGCAGAGAAGGCCAGAGTTCTCACCATGGTCAGACAGACAGACAAAGCCAGAGTTCTCACTGTGGTCAGTCAGA
s HiC_scaffold_1 139038279 79 - 233722169 AGACAGACAGACAAGGACAGAGTTCCCATGGTGGCCAGACAGAAAGACAACGGTGGAGATCCCACTAtggtcagacaga

a score=9496
s chr3            93411509 283 + 160039680 CCATGAGAACTAGTAAGAATCT-GCTCTGATTCAGGGAAATAAAAATCTTACCAAGAAACCAACAAGAGGGCTATAGTGAGGAAAGGAATCCGATTCCTTGAACTATTGGCTCTCTACCAGCTCAAAATATCATGGCCATTAATAAATATGTATCACTTACCATTCATGAATTCACTCAACAAATGATGAGAGCTTACTCTGTTCCAAGAACCATCAAAACACCAGGGGGAAAATA----TCTAAAAATAGATTAACAAAAAGTACAGTTTTCATATAGTTTATATTT
s HiC_scaffold_1 139056163 275 - 233722169 CTATgggaatcaataaatattttactacAGTTTGATTAAATAAAA-TCTTACTAAGAAACCAACAGGAAA-CTAGGGTAAGGAAAAGAGTCCAATTTGTTGATCCACTGAGTCTCTGCCAACTCAAAATATGAAAGCCATTAGTGGGTA-ATTTTATTCCTCACTCATTTGGTCATTCAACATAT-ATGAGTATCTACTATGTTCCAAGAAACACCAAGGAACCAGGgatagaataaaatttttaaaataaacaaaagaagg---------tCATAGAGTTTATATCT

a score=11974
s chr3            93415502 1620 + 160039680 TGACTCAGGGGACATGCCATGCCTCTGTAAGTTGTCACCTGATTCTTAGTCCTGCTCAAACTTTCAGAAGTCCCATCACCTGGTAGCAACATCTTCAGGGACTCAGCATGTGATTAACCAGCATAGGCCAACTAATGCTGTGTGGCTACCTAAGA--ACAGCAGCCTCCTCAGCTAAGGAAGGGCAGAATAACAACAACGTGTGTTTTTTGTCTTCGATTAGtttataa------tataaataaa------aaattaaGCACACCCATTTTAGGATGA------GTGCCACATTCACTGAAGT-----------------------GCTCTATGTTATACCGATC-------------------------TATATACAACTGT---TTCCAGCT------CTACTGACATATT------ATTGACAAAT-----ATTTAAGGCATGCATGATtatgtatgtatgtagtatgtatgtatg---------------tatgtatgtatgt--------------------------------atgtatgtatgtatataGTTAAACTATTCATATATGTGTATATACATATATATACATGGAGAGAGGGGGGacatagttatccttttct-tgtatagtgagaacatgcaagacctactcctt--gtaa---ttataatacagttagta-cagtcactatgctatactctagatttctaaaactgattcatcttgtataattgaagcttttataccctttagctaataccatcccatt-----ctccATATTTCATTGTTACTATATAGAAATTAAGTGACTGTTAAATGCTG---tcacatac--aatcttcccc--------atgctaaggcacattccttt------ggtatctaatgtctt----------------------------gacagtttt----------ttgttttg-----ttttgcaagacagggtttctctg------------------tgtagcttcagctgtcctgg-----aattctctctctctgtagaccaca-------------------------------ctagcctcaaa-------ctcccagaagtcctcctgcctctgcat-------cctgagtgctgaaattaa-----------------aggtgtgtgccattattacctggttttttgaaagtttaaatcaagaattggtgttggattttgttaggtttttgttttgttttgttt---tttttgagggtttttgtttgtttttgtatgtgtttgtgattttttttattctgctaatgtgattttgatcacctttattaacttat-----ttgtagcaacccagagac-------------ttacttgatcatgaaccttgatctttttagtgatctgtcaaatttgatgtattgttatgttgagaa-catttacatctcttttcatcagagatattgagttataatttctcttcct--cactatccttatttgacttcagta------taatgttggcctcataaaaatgagtttgtaactgttcccctgtctccaatttttgaaacatttgaaatgagggaagcaaccctgctaagctgtcctcagaccgccacatgtgtgtggcaaggcccacccctcacacgagataaacatataaatgatgttatttaaattttttgtttgataaaatcaacttgtgaaaacatcagtcagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaggtttttattcagtttct---tgctatttatttgttcaagttttttacttcttcatgattgagaattagtgagttctacttctgggaatttgtccatttcttctgcaaacaggc---atctgctcacttatgattatttatagccatctcatgatcttct
s HiC_scaffold_1 139057360 1769 - 233722169 TGACTCAAATAATATCCTATGCTTCTGTCAATTGTCATCTGACTCTTAGTCCTACTCAGAGGTCCAAAAGTCCTATAACTTACGTTCAACACTTTCAGGGATAATGCCCTTGGTTTATCAACATGAAATATCCAGTGTTGTGTGGCTACCTAAAATCCCCACAGTCCACTGTGACAAACGGgatcaatttaaaaacaa------ttttctttcattgattgtttgatcatttctttgtgtttaaatcttgtaacctgaaca-actacttctaagataacaatatgcaacacattaattagtgttaatttcctactacttttttgaaattctgtatcatttccgtccttttttctgtttgcttctttaaaataaaaaaaaatgtatattctagTTAGAAAATCACACACACAGTGGAACAATTGCAAAGTCAACAACTACAAGTATAAATGAGTAGCATCATATGTTACACTTACATGTAGTTATTTTTCCAGACTATGGAAATACCTTtggcaaacaaaaattttaaattgacagcataatttatatttatatataattaaattattacTGTGCTAACTAATATATCTAT-CACCT--------------cacatttatctttttgtgtgtgt-gtaagactATGTAAGATCTACTCTCTTAGCAAAATTTCTAGTGTTGTTAACAGTAGTGACCATGCTATCGATTAGACTCCTAGAAATGATTCATAGTATTTAAC--AAACTTTGA-GCACTTTAAACAATATCTCCTCATTTCCCATCCCATAGTTCATTGTTAGTATACAGAAATGaaactgcttttttattttgattttgtatgcTGAAACTTTACCGAATTCATGTATTAGTTCAAATTGTTTTTTATGGAGTATTTAAGGCTTCCTATGTATAAGAATGTATCATTTGCAGAGacaattttccttctttccctgtttAGGTACCTTTTACGGtgtcttgttgctttgctattgttattgctgttaTGTAGCT--AACTACTCTGGCTAAAATTTCCAAGACTGTGTTGAATAAAAACGGTGAGAATGGGTATCCTTTTATCATTCCTGATCTaaaaggaaaagctttcag----cCTCTTGTCATTAGATATATTAACTGTAGGCTTGTGATTTATGGTCTTTTGTATGTCTAGGTACATTTCTCTAATAGCTACTATGTTGAGAGACTTTATCAAGAAATGACATTAAATTCTGCCAAAATT--------TTCTGCACCAATTatcaagtgatttttttcattt----------------cttctattattatgcta----------tattgcatttattgatttgtgaaaGTTGAACCATCTTTGTGTCCTGGGAATAGATGTCATTTGATCATAGTATATGATCCTCTTAATGGgccattgaatt-------ttatttttttgaaaattttttatagCTCTGCTCATCAGAGATATtggtttgctattttattttcttgcagaATCCTTGTTTGgatttggtatcagagtaatacttgtgtCATAACAATTAACTTTGAAATGTTACCTCTCTTTAGTTTTTTGGAATACTTTGATAAAGATTGGca------ttaatttttcttcaaatc-----------------------------------------------------------------------tttGGTAGAATTCACCTGTGAAGCCAT----------TGGGtccttggttttttgttttggtttg-----------gttttttgatagGTTTTTATTCAATCTTCTTGTGTTATTCATTTGCTCTAATTTTTTATTCTCCCATGATTCAGCTGTA--------TGTTTCTGGGAGTTTATCTATTTGTTT--CAAGTTTGTCAAATTTATTGGCTTATAATTGTTCATAgttgtcttttgtatttct

a score=15662
s chr3            93420598 831 + 160039680 cggaaaaaa------aaaaaagtccaaatgtaagtaattgaggTGCCTTTCTCT----GCTTTTTGATGGTTCCCAGGAATAGTCATTTCCTAATTCTTAGCAATAAACAAAGTTTCAGAATTCTTTGCCTGGTACTTCAGGAAATCATGCAGGTAATTCAACAACAATGCAAGAATCTTCTCATGCAGAAATATATAACTGGCATTTCTCCCATCTGTAAAAATAATCACGGGAGACATGATGGCCTGCATACATGGGTGTTTCCAGGTGATCTAAAAGAATATCTACATACTGTGGTCTCTGTAATTGGTAAAGTAGTT---TACTCCACAGTACACTGACACCTTCTTTCATTTCTACAACTACTTCATTAATACCATATTCTTGTAATGCCTGCTTCCTGGCTATGTCTTGTAATTTGCATAATCCT---TCCAGAAC-CCACA---TTCTTGGCAGGAAGATAAAAGAGCAGTTTTTCCCTTGTAATTAAGTCTTAGTCACCAACAAGCTATAGTTTTAGTTATTCAGGAATCTTTAACGTAAACTTCAACTCATATTGCTAAACATTGTTCCCTCACTCTCAACCCCAGAGATCATT--AGAGTCTTCTTCTGAAACGGAGATGTTTCCACAAAG---AACTGCCATTTCCACTCCTGGGTGTTTGCCTCCCTTTCATTTCTTTGCTTCTCCTTCGACATTTTTCTGTTATAGAGACCAATGTCTTTTTTCCTGTGGCAGTTGTTCTCATTTT-----TTGTTTA-TGCTCCTGGTTGGCTCCCTGAGATTCTTATTTAATCTTA--ATTCacatttttgagtgctctacta--------------------------tattccaaccactggaa-gtataaagt
s HiC_scaffold_1 139061659 759 - 233722169 cagaaaaaagggtagagagAGGTCTAAGCACAAGATAATAACACCACTCACTCACACAACTTCCTGGTGGTTTTCAAGAAGTGATATGTCATAATTACTGGATCTAAACAAAGTTGCAAAATTCTTTGCCTGGTACTATAGGAAGTTATGAAGGTGATTCTGTAATAAAGCAATGCTCTT----------------------------------------------------------------------------------------------------------------CCGTGGTTTCTCAACTTTGTACAGTAGTTGAGTGTTTAACATTTCATTGATGGGCTCTTTCATTCCTGCCACTACTTCATTAACAACATA--CTCATTATCTGTGTTTCCTGGAGATTTCTTCTAATTTATATAATCCTGTAGCCTGAACTCCACATTCTTCTTGGCATGAAGATGAAAGCGCTGATCTTGCCTTATAATTAAGGCTTAGTCAT---CAAGTCATGATTTTACCTATTCAGAAATCTTTAACTTCAACTCc-attcata---------aatatttccttATGTCCAACAGTAGCATCTACTCAAGTGTTTTCTTCTGTG--GTAAATGTATCTTACTGGTTTTACCACTATCTCCATTCCcttgtattttctgtttgttcacttttat-ttttttcttgaacgTTTTTCTGTCATGGAT-CAGACATTTTCTTTGCTGAGGAACCCCTTTTCATCTTACTCACTGTGTATTGCTACTAACTGG-TTTTTGAGTTTCTCAGTGTTTCTGAAGATTCACCTACTTGAGTGTTCTGCTCTTTGAAATCCATTTCATCACAATTTTTATTCCAACCTTTGTAATGTGTAAAGT

a score=15642
s chr3            93420638 681 + 160039680 CTTTCTCTGCTTTTTGATGGTTCCCAGGAATAGTCATTTCCTAATTCTTAGCAATAAACAAAGTTTCAGAATTCTTTGCCTGGTACTTCAGGAAATCATGCAGGTAATTCAACAACAATGCAAGAATCTTCTCATGCAGAAATATATAACTGGCATTTCTCCCATCTGTAAAAATAATCACGGGAGACATGATGGCCTGCATACATGGGTGTTTCCAGGTGATCTAAAAGAATATCTACATACTGTGGTCTCTGTAATTGGTAAAGTAGTTTACTCCACAG---TACACTGACACCTTCTTTCATTTCTACAACTACTTCATTAATACCATAT-TCTTGTAATGCCTGCTTCCTGGCTATGTCTTGTAATTTGCATAATCCTTC----CAGAACCCACA---TTCTTGGCAGGAAGATAAAAGAGCAGTTTTTCCCTTGTAATTAAGTCTTAGTCACCAACAAGCTATAGTTTTAGTTATTCAGGAAT----CTTTAACGTAAA----CTTCAAC----------TCATATTGCTAAACATTGTTCCCTCACTCTCAACCCCAGAGATCATTAGAGTCTTCTTCTGAAACGGAGATGTTTCCACAAAGAACTG---CCATTTCCACTCCTGGGTGTTTGCCTCCCTTTCATTTCTTTGCTTCTCCTTCGACATTTTTCTGTTATAGAGACCAATGTCTTTTTTCCTGTGGCAG
s HiC_scaffold_1 115286230 659 - 233722169 CTCCCACTACTTTCTGATAGTACTTAGGTGGGGCTGCTTCATGATCACTGGCACTAAACAAGGTGCTA-AATTCTTTGTCAGATACTTGAGGAAATCATGAGGATAATTCAGCAATAAAGCAAACCTCTTCGCATCCATAGATGTA-----------------ATTCATACAAATACTCTCAGCAGGTGTGGTGCTTTGGGT--AGGGGCATGTTGGGGTGAT----------------ACACTGTGGTCTGTCAGCGTGGTAGAGGAGCTGAGTGGCCAGCGTCACactaaagtatttttttattcctgctaCAGCCTCGTTACCTGTGTATCCCTTATTATCTGTGTTTCCTCGCAATTTCTTATAATTTGCATAGCCTTGTAGAATGGAATccacattcttcttggcaggaAGATAAAAGCACTGTTTCTGTCTGGTAATTAAGTCCCAGGCATCAACAACCCATGGTTTTAGCTCTTCAGAATCTTTACTTTAACATAAAGGATCTTTAACTTCAGGATCTTTACTCTGTTCataaatgtttcttcattttcgA----------CAGTAGGTTCTACCCGAAGGAGGCTGAAGTGTCTGTTTGGTCCTGCCACCATCTCCATTCGCAgagattt-------tttgtttcatttgttttcactTCAACATTCTTCTGTCGCAGA-CCAGATGTTTTCTGTTCTGGACCAG

a score=52120
s chr3            93426923 3077 + 160039680 agaactgaatcaaaatgaaccttccttctctatagattacccagccttggatataggattacagtaacaggaaatggactaaTTCACCTTGTTAAACTTCTACTtccttcccagctacacaagctgatgacccaggcctgcct--gattccttcttcttcttcctcacctgcacccaatgtgtcatcaaaacctgtgtgttt--------ttaagtcttt-taaactaaatgatctttctgtagtccaactgcaaaatgccttaatccagcccatcatttctcatctattttactaaatgacttcaatgtctctaattctattttcttccaagtcattctcagtatgaatgacaatgacatttcttcttttttttttttagattttatttatttatttgacatatatatgatgaatatactgtatctgtcttcagacccaccagaagagggtatcagattccattacatgtggttgtaagccaccatgtggttgctgggagttgaactcaggacctctggaagagcagtcagtactcttaacctctgagccatctctccagccacccccccacaatgacatttctaaaaatataaatttgacgatgttattgtgttctgcaaaaaatcttgccat-gcttctccgtagtctatagggtaagacctttagcctttacttttgcttgcagagtcctccatcatttccagtgcttgggtctcccaacctcacctttcatc------------attcccTACACCCAACTTGTCCCACAGGATGTGGCCTAAGCTTTACCACTGAGCTGTTCTACTTGAGTCCACTTTACGGATGaagtaccccttcaatatgctcccataataccttccaccattgcctttcttatcctggattaaaataatgtgttgatttagatgactctgtgaccacactttaatctcctc---aaaggctgggtcatgtattagtt-ctctttatacctttggttctttgcacatcacaagtacttacttaattaaggttaggtgaCTACCAAAACAAAACTGAATGACGTCTGAAGAACATCAGCTATGAAAGAAATTGAAATGTCTGACAGTTTTACATTTAGCAATAGGTGCTCATTGTAACCTTTTTAGCCAGAAGAGGGACATAAATACAAATAAGACAGGAGAAAGAACTTTTCGGTAA---TAAGTTATCT------GATATAGATGAACCTTACAAAGTAGGTTCTGCATATAGTGGTATTCTAGGGCTTGCTTCAGATCAAGAAGCCCACAAGTGTGACTTCATATGT--TCTCTGACCTGTTCCACAAAACTTGTTATAAAAATATTCTTTTTCATGTCCCTCTTCTGATAAAGCTTATAGTGACCACCTACTATTATATAAAATTGTCCTCCATTCCACTTTTTTTTTTTGACAGCTGACTTTTTTTTCATTAGACTGCTGCAAGC-TAAATTAACTAAACTAAAAACTTGGAAACTTTCTGAAATTGTAAATTATTATACAAATGTAATAAACCAAAATT-ATATAAATAAAATGAGGTGTGAAGCCAGCAAGGTATCTCTGCAGATCAATAAACTAGAAACTCGCTCCAAGTCCGAGGACCCAAGTTCAATTTCTGAGATGCAACTGGtaaataaataaataaataaataaataaatGGAATTTTAATGGTGGGGTCATAAAGAGCTTTAGTAAAACTCCAGGCAGCACAGTCTTGTGAAAAAGAGATTTCCAAATACCAGCTCCCTATTTCCCTGTCATGTGACCCTCAGGAGATCACCTGGCCTTTCTTATGCCAGAGCTAGACCTCATAAGCTAAATATA-----------CATAGATTTATTTTTTGCTAGCTTTCTACCTCATACGGAGCATGACGAACAGAAGGCAGTCAATAAATTATAGCTTCCCATCCTTCCTCAGCTGACACTCTACATTTAGCCCGTGAGATATTATCCCATTGTCTGACCGAGGTACCTGAATCAGAATCTAGAGTAAATGGAGGGATACATGTACTCAGGCTTCGTCTGAATGGGGGCCGGGGGGAGGATGAGAAACTCTTCACAACTATCTGAGAACTACAAGAAGGTAATGCGCTCAACAGTGATTTAGATAAATGAATTACGTCAAAGATTAACAGT-GATGGGAGAGGACAACAAAACAGCTCTGGAACCTGAATCCTAAGCAGGTGGGTCCATGGCAGAAAAGAGACTGGGTGGTGTAATGGTCAGGTAGTGAGATCAGGGGCAAAGAATCTCTC-CTCATATCCCTCCTCCCTTGTGTCCATGAGTCACCCTGT-GCCTTAGGCAAG-CCTTCTAAAGGCTGTCTCCACCTCACCCTCCAAAAATGGGCACCAGAAGACTGTAAGCACAGCAGCACACTGAAGCCCTTTGG--ATTCCCACAGCACAGAGCTGCTGAGATGTAAGATCCCAGTGGTCTGATAGAAAAGTAGCTGGAGAATCGAGGTCTGGATTTCTTGCACACCCAATTAGAAAAGACCACTGGAAGAATGAACACCCATCGAA--TGAGTCTGAA-AAATTTGTTCTCCA---------------------AATCTTGACTCCTTGTAAAAAAAA------AAAAATAAGTTGGAAATAATCACGGTAAATAACCTACAACAGCAAGGACTGCTGATAGATTAATAAAGTA---AAAAAAAGGGCAGAACT--CAGTGCTCATGG------------------AATGTCTAATGT----TCCTCCTGAGG-------AGTTCCCCACACAGGAATCTCTTCCTAATCTTACCTCTCTCTTTGTGGATCTATTCCCAGGGTCCTGAACTTAGCTATTAAAAGAAGAAAAGGACACATAGAACCTTAAATTCTCTTCCATATTGTTTTCCTATAAACTGAACATACTCCACCGTTTATGACCTTACTTCTTATAG--AGCATGTATGTACACATGCGCAATCTTAAAAATA----------------aaggaggagtca----ttattgtaattttatgactagatacctcatgctcagagagtgtagctgactcacctaagttcacagagaacactaattctgagatgggcctgtaagacagaagaaccccaggctcctaattTACCACATGGCCAGGCAGAATCTATTAAAAAATTAACTGTCCCCAAAGAAAACA----CATTCTTATATCCTCACTCTG
s HiC_scaffold_1 139070464 2579 - 233722169 aaaaataaat--aaatacacctcTCTTCTTTATAAGTTATCCAATTCTGG-TACCCTATTATAGCAATGGAAAATAGACTAAAATGCCTTATAAACAGTCCTTTGTCCTACCAGATGCTCAAGCCAAAAGCCCAGACTTGCCCCaaattgcttccttttcctcaGCTTCTCTACCCAATATGTCAGCATGCCCTATGTATTTCCATTTCTTAAAGtctttattatttaaatcat-tttctccAACCCAACTGCAAA-TACTTCAGCCCAGCCatccttttctcatttattttactaagaGACTTCTCTGTGTATGATCTTGTCCTTTTCCCATCCATTCT----GTTAATGATAGAGACTGTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATACAAATCTGATTATGCCATCATCCTCTGCCTAAAATCCTATAATTGGCTCTGCATAGCCTGTAAGATAAAATTTACATTCCTTGCTTTTGTCTACAAAGTCCTTCATAATCTCCGCTGTTCAGCTCTCCGAACCTCAGCTCTCATCCCCACCTAACTCACACCCTACACCTGATTTATCCCACAGAATTTGTTACAAGCTTTACTGCAGAGCTGCCCTCCATGTGCCCACTT-ATGAGTAAAATGCCTCTTTAATCTACTCCCATAATACCTT------------TTATTACACTGGATTGGAATAATGAGTTGATCTGAATGACTGCCTAACCATGCTATAATATCCCCTGAAAGGCCTGGATggtgcatttttttctctttatatctctagttatttgtatatcagaagtTTTTAACTAAggatttttgaatgaatg----------aatgaatgatgactAAGGACGATCAGATGTCAAAAAGAGTTAAATGAACAacaaatgtatattta-tgatatatatt-attatatacatattatatat--------tatacatcaatatataattgtatatttatatttgtgatcACTGTAAGCTTCCTTACAGGGGTATAAATAAAACTAGCACTTGAGG----------AAGGGTATTTTAATACT------AGATCATATGAGGCATATTTGTGACCAAATAAGGGATATCAGGC----------AAATCACTCTCGACAATCAGCTTCTTCATgtc--------aaaaaaactgaaa---------catcATCATATG---------TACTATCTACTTT---------------------------GTAAGGTTactgaaagcataaaataa-------aatattttgcgaACTCTCTGAAATCACGAATCATTACACAAATACAATCAATTATAATTTGTGTAAGTAAAAAGAGGTGTG-------------------------------------------------------------------------------------------------------------------------------------GTCACCAAAATTTTCAGTATAATCCAAGACAGCAGGGCACTGTGAAAAGG-----------CATCAGCTCTCT-----CCCTTCATATGACCTGTAGCA-ATCACTTGGCCTTTCT-ATACCTCAGCTG--CCGCATCAGCAAAATATGAGTACCAATGTCATAGGACTATCAC--GTTACTTTTGTATCTCATATAAAGCATGACAAATGGAAGACATTCAATAAATTGTAGTTTCCCATCC-TCCTGAAGAACCGTTCTACATTTATCC---------TTACCCCA---------------ACCCTAAT-----------------------------------------------------------------AGTGAGAAACACG--GCAATTATCTAAGAaccaaaacaagataatgtaataaatgaaattttatataaatgaattacatcaaaaatgaacaatggataaGAGAGGGCAACAAAATAGCTCTCAAATTCAACTGTCAAGTAGGCAGCTCCATGAGAGGTAACTGACTACATGGCGT-GTTGTCTGGAAGTGAGATCAAGGAGGGAGAATGTCTCACGCACATTCCTCCTCCCTTGTGCTTTTGAGTCACTCTGTAGCTCCAGGCACGTCCTTCCAA----CTTCTCTGTCTCATCCTCAAAAAGTGGGTATTATAATAC---AAGCACAATAGCAAAGCAGAATGCTTGGGGCATCTTGACAGCACAAAGCTGCTAAGAAGTAAGATCCTGAGGATCTGATACAAAAAAA---TGAGACGTCAAACCTAGATTTCCTGGGT-----ATAAGAAAAAGTTAGTGGAATAACAAATATCCCCTGAATGTGAGTTTCAGCAAGTTCATGGTTCATAAGGTTTAATAAAAAGATTGAATCATGGCTTGTCATaggaaaaatatgtgaaaaagaaatacaaaataaccaAACTAAATACCTCATAATAACAGAAGATGTCAATTGAcagataaaggaaggaaaaaaaaaacaaaactaacagaATTCATAGTGAAGATTCAAGGAGGGCAATGACCCATATGGAGTTCTGTGAAAGCTGGCTCAGTGCCACATGCAGAAATCTGTACCTGACCTCACCTCTTCTTTTACAAATCTGTTCCCAGGATTC-ACATTTAGACGCTAAAAG---------------AGAACCTTAAAATTCTCTCCTCATTTTTCTCCTATAAATCCAA-ACATTTCACAATTTATAATCTTATTTGTTCTAGtaatcctacacacacacacacacacacacacacacacacacacacacaccctagagAAGAGTCAAGAGTCATCGTAATTTTGTAGATAGACATCCGGGATCCAGAGAGT----TTGACTCACCTAAAGTCATGGA-AATATCAATTCTGAGCTGGACCCATTACAC---AAACCCTTAGGCTCTCAATTTACCACAT---------GAATCTATTAAAAAATTAACACTTCCCAAAGAAGACACATTCATTCTTATATCCTGATTCTG

a score=48380
s chr3            93430714 2320 + 160039680 GAGAGAAAACA--AATTTCAAACATC-TGCTCAGGTCCAGATTCCTAACATCCT-TTTCATTGTTTTAAATCCC-------TACAccagcagactggctgagaggagaaagcccttcctagaccatccaacaagttgcaaccccagctcagccgctggatgacctagggcaggcagcttaacctctccgtggccccgtcacctGAAGAGCAGAGGCAGCAGCACTTCCGACAGGCTGGGCTGGATGAAGAATGACCAATAAAAACGGGGTTGTAAAAACCCTTTGCAATGTATTCAGTGTCCTGTAAAAGCTTAATGATTATAATCAAGCTGTTGCTACAAGTCTGCAAACTCCCCTCATGACACTCATCAGT--CCATGCTGGTATCTGATAACAGAGATAACTCTAGGCTATGCCACCACCACACACTGCACAAACTGGTCCGGACCAAGACAGGTTTCTTCACACAAAGTATTCAGGGGAGGGGAAACGTTCCAATTTCAAACTGTCAGGACAAATCATCACTCTGCTTTGTTGGTTATAGGTTTCTCCTAGCTTCTCAACAGAACCTTGAACCTCTGTGACCCA-GGTTGAGAGAATCTCCTTTATGAAGCTGGCA-CTGCCTCAGAAAGTCACCCTACT-------------TACTCCTAACCTCGAGGAGT-------CTCTTGGTAAAGTCTAAATCT-------GGTCCTTCCTTCA----------------------------------------AAGGGAGGAACATCAAATGATAGTCaagaatatggttttttacaggtgttaggtttgcgttcaaattccagttttgccacttgtcaatttctttgatcttaggttcatca-cctaacatctccaagtctctatttcttcatctgcaaagtgagaagaaaaaaaaatgtctaccagccagaattgatgtgagtgaggcctaaatgaaacaCATACTTTTCCT----------------------------CCCTgtgttgaagaaatccaaggc---------------------------atacatcttaggcaagcactctgccttt-----------------gagctacatctccagtccTGACAACATTCACTA------------------------TTGCTTAGATTGGGTTGCTCAAATGACTCTGGGTGTAGAGGACCAGGCAGGCTGAGGCAGATGGCCACACCGGAACAAGAGGCTCCTTCAGAGCTAC-----CTTCTAATGTGGGCAAAACCCAACCACTTTACTTCATCTAGGCTGGTGCCTCAGGCGG-TTTCCTCACTGAGACAAAATCTGCTGATTCAAGTCCTCATTTAAATAATAATAGCAGAGGAAGACTAGACCAGCG-AGGTGATACTCTCTGAATTGTTTTTGAGATACAGACACAAAGCCAACCCCAAGGCAAAAAGAATTTCTTTTTCCCAACTTTTGC---AAATCTCCAGAAAGAAGTGCTGACAAGGTTA--------------------CTTTCTTCTCACATGCCTTTACCCACCCCATCTTCA-TTCTATCTGCTATACCAGGATCCAGGCAGCTATTCTGTCCTCCTAGCAAGATATAGAAAGATAAAACTCCTCACCCCCTTACTAGTCACTCTGACTTTTTTTTTCTTTCCAATATTCATCTCTTACGTTTTCTCCTCGTCT------TCCCATCGAAGAGTGAT-TCTAAACT----------------------CCAACAGG-ATACGTTCTG--------------------GGAATGCTCTTGGGCAT--------------------------------------------GATCTTGTATGTGATAC---ACAATTCACTTGTATGATAGTATTATCAACAATTAGTTCTTCAGTGCTGGTTGGCaggcactgggaacaaagcatcaaacaaacatagagtctgatttcacagagcctgcattttattgAACTCAGTTCCTTCATAAGTTAATAAATAGATGGTTGAAACCATTGTTCTCTTCTGTAATGACAAGTGTTTAAAAGGACCAGAGAGTCATATAATCCTGTTTTAAAGGAAG--ACCAAGTCTCCACTGTAG---------GCAGCTGTCTTTATTTCAAAATGGATTTTACTTG---ATCCCACACACTTTCCTCACGCTACCTGGAATGTCTCCATACCTCTTGTTGTGCCTAAAATCTATTATAAGCCTCCTCTCTTCACTGAAGCCTTCCCAGGGTACTTCCCTCAGTAGCAGTCTTTCTGTCTCTAACCTGTAGAGTGCTTGTAGACTATATCTGGTCTTCA-----------TGCCTCTCCTAGTCCCTG-----------AAGGCATAGGATCACATCTTTTCCAGGGCTTAGCCTCTCCTTCTGATTTTTGGTAAGCTGGGTAGCAAACCATTGCGGAATTCATGGAATATATGGA-------GATACAGTCTTCTAGAGCTTGTATTAAAGGACTTTCAAGATGCTTTACATCTTGAAAGGCCTAAC--GGCCAAACTCTATAAGCTAA--CTGAAAAATGCTGACTCTGAGAGAAAAGATTATACTAATATCAGAAAAATCAGTTTGCTCTCCTGTGAGAAGCATTGTAACT
s HiC_scaffold_1 139074491 2490 - 233722169 gagacaaaacataaattttagaCATCCTGCTATCTTTCAGATTCTTAAGGTATTATTTCACTCTTCTAAATCCCCAGTTTCTACACCA--AGATTGAC-------------------CTTATCCAGCCAAC---------CCCTAGCTTAGCCATATGATGACCTCTGGCAGGCAACTTAACCTCAAAGTATTTCCA-CACCTGGAGAGCGGAGGCAGCAGCTCTTCCATCAGACT-----------------ACTAATAATAA---GATTGTAAAAACTCCTTGCAATACATTCAGTGTCCTGTAAAAGCTTAATGATTATAATCAAGCTGTGACTGGAAGTCAGCAAGGTCTACACATGACACTCAGTACTCACTGTGCAAGTATCTGATAACAGGATGCTCTCTGTCCTGTGCTTACATCA---GCTACACAAACTGATTTAGGC--AGTCTGGTTTCTTCCTGCCAAATTGTTAGGGAAG-------------------AATCCCCAGCATATTTCATTAATTCAACATGTT---------------CTGGCTCCTAACAAAAATCATGAGCTTCTGTTCCCTGTAGCTGAGGCAATCTCCTTCCTGCAGCTAGTACCTGCTAGAGAGGGCTGTTCTACTCCTGATTGCAAGCTCCTTCTAATCAAGCAGAGTGGAGAAGCTCTTGGTAAAGAGGACATCCACGGATGGGTTCTTTCAACAACAGTATACTGCATTATCTTTACACAAGCAGcaacaaattaaaagaatagTATTGAATGACAgtaaaaaatacagatttgagAGGCTAGTAGGTCTGCATTCAAATTCCAGTTCTGCCACTTGCTAACTTCTTTGACCTTGGGTAAGTCATTTTAACAACTCAAAGTTTCAATTACCCCATCTACAAAGTGAGAAT----AACACTACTTACTACATGGCATTG----Gcataagaattaaatgagaca---aCTTTTACTACTGTACCTGGTTTACAGTGATGGTGACCATGGTGCTGATGAGCATGAGGGCCACAACAGAAATAGACTCCCCACCATTATACCTCCTAGACCAAGACTCACTCCCTAACATGGAGATGCAGGAGAGAAACATCTCTGGTCCATCTTGGATTTCTCAGTTTCTGGACtgtgcaaaataaattttattagacTGAATTAATCAAATGATGCTAAGTATagggaatcaga-aaaatattgcacatgaatgaataagaaagcCAAGTTTCCTT-GAGCCACTGTTTCATTTAGTTCTGGCAAAA-TCATCCACTTAACCTCATCTAGGCTGGGGCCCCAGGCAGTTTTCCTCACCGAGGCAAATTCTGCTTATTCAAGCTctcatttaaataataatagcaCAGGAAATCCAACCTGGCTCAGGTGATACTCTTGGAATTGCTTTCAAGTTACAGATATGAAACCAACCCCCaggcaaaaataatttattttcctcaaTATTTGCTTTTAATCTCCAAAAGAAAGCACTGAGCAGGCCAGTGTAGAACTAGAATATTAGTTTTAATATCAT-TACTCTTGCCTTCCCCATCCTTAGTTCCACCTG-----CCAACGTCTAA-----CAATCACTACTCccag-aagacttttaaa---aaacgTGCTTTTCCCCTTCTCAG---AGCTGA-TTGTTTCTTCTCTCAAatgttattgtat----ttttcttttagaacaaaagatgttaatgtagagTGTtgtctaaactaaaacctcagtattcaggtttaataaCAGGTGTTTGTACTGTGCAATAAATAGTGGGCTTTGGGATGCAGTTTGGCACTCAGTCTCTACAAGGTTTACCACCACTGATAACCACTGATACAGGGTCTTGTATGTGACACTGAATAAGTTAATTG-------ATTCTTTCAGTTAGTGTTTCCTGAAGGATTG-TGGCAAACACTGAGAATAAAG---GCAACAAACAT---------------GGAACCTACATCTTATTCTACTCAGTTCCTTCCTAAGTGAATGGATGAGTGGTTGAAatcaacattttcttttgtaagtTCAACTCT---GAAAAACTAAGGAAACACA-----CCACTATACAAAAAGTAATAAAGTCTCCACTGTGGTATGACTGATCAGctatctttttttcaaaatatactttGCCTGTGAGTCTAA------TCTTTTATGCTGGCTAGAATGTCTCCATTCCCCGTGGCCTGTCTGAAATCCATTCT-ATCCAGAGCAATGCACTGATGCCTTTCCAAACTACTTCACCAAGCAGTGGCCCCTC--CCTCTAACTTGTAGAACACATATAGATTACAGCTATCATACAATCTAGGATGGTGTCTTTTCCAGTACTTATTCTATCTTGCCAAGTGCAGTACCTTCCCTTTTCcaggtttttaattt--------gtttttgataaCCT-GATAGCAAGGAACTGGGA---TCATGAGATAAATGAGAATTTATAATCCAATACTTTAGAACTTTTAGTATAAGATTTTCAAAGAGTTTTGAACCTTAAAAAGCATtacaaaaaaaaactccaaaaactgatTTTGAAATATGCTGGAGTAGAGCAAAAGGATTACACTAATGtcagaaaaactgactttctccTCTATGAGGA--ATTGTAATT

a score=16095
s chr3            93433982 585 + 160039680 TACATGTTGTAATTTACTTCAAAGATCCCAGTTGTGCTGCCAAAAGC------------------------------------------------------ATGATTTTATTTT---TGCAATTTGTAAGGTACTCTCAGAAGATGCCCTTATAGATGAACCTTTAATGATTCACCCTCTGTCCAGAACTGATGATGAGCCAGCAGGGAG-CCAGAGCAAGGTTGGGCTTGGTCAGATACTCAGCAATCAGCATCCATACCATTCTTCACCTGGAGAT-----AAACCTC-----------------------CAACCACACACCTGACAGACTAGCTGAGTGGCTAATGTGAA------ATATGCAACCACTCTAGTGAGttttta-atttaatattttaattaaaaaataCTGCTCCAAATTGCTTAGGG---AATAACAATGAAGGAAAGTCCCGGGTTTTCACTCAGTAAGTCTCTTTCAGTTTTCAGCAAGTATTTATTAGGCCCTTATTCTATTCTATTCTAAGTAAGGCACAAGGCACTGGACTGTGTTGTACTTCacac-----tgtataagaactattt-cacagcattggtattgaatcgggcattgacagtaatccagagaaaaagcacatgggaagatatgcacagtgtatatgcaaattc--taccatgccatctt
s HiC_scaffold_1 139076999 672 - 233722169 TATAGGATATGGTTCACTTCAAAGACCCTCTTTGTGCTGTTCAAAGCcagggctttttgtttgtttggttggttggtttttcttgtttgtttgtttgttttgttgttttgttttgtttgtaatttgGGAAACATTTTCA-AAGACATGGTTATAAATGCACCTTTAATGATTCACCCTCTACCCAGAACTGACAGCAAGTCAGCAGAAGGCCCAGAGCTGGGCTGGGTTTGGTCAGGTACCCAGAGGTCAGCATCCATAGGACTCTGCATCTGCAGCTAaggaaaacttcaaagaaaactaCCTGGAAAGTTACCATTAAGCATCTAACAGAATAGTTAAAATGCTAATATGGATGTTTGCTGTACAAACACTTTAGTGAGTTTCaaggtttaaaa---caaaaaagaaacacttcactGTATTGTTCAGGGCGTAATCACAAGGAA-AAAAGTCTTTGTTCTTCCCTCAGTAAGTCTTTTT---TCATAGATAAGCATTTGTGGAACTCT-----CTTTCTACTCCGGGAAAGGTGTAAGACACCAGAGCATGTTACCCTGTAAACAATATCATATAGCAACTATttgaataatatttatattatattaagtATTATAACTAATCTAGAGATAGAGTACACAGAAGGATGt---cagt-tatatgcaaatactgtacTATGCCATTTT

a score=49230
s chr3            93435864 1348 + 160039680 tttTGACAAATCCCAATGCTCTGTAAATTGGAGGAGTCACTCAGTGGACTAGAGCTATCACTATAGAACAGGAAAAAACAAAATGACCTAAAAATCTATGACCAGTTTACTGA--GAAAGCCAGGCTCACTCTGCCCCTGTG----------ACGGG----AAGGCAGTAGTGTTATCCTTGGGCACCCGTGCCAGTCACCCTGCATGGCATGACGTGAGATGAAAGCGTCTGCTGACTCTTGGAGGTATAATTACCTAAAGGGTGGGGGTGTAATTAAAGTAAGGATAATTTACCTTGAAGAAGATAAAAATTAAGAAT-ATTAATGATCATAATAATTAGCTCTTTTATATCTAAGAATCACAAAATACTTTACAAGCTGTAATTATCACAGCTCCCCTCTGAGGAAGGGATTCATATCTTATAGCTCCTCATTCAACAGAGGGGTGAAGTGGTGGACATGGATGAAGGAAGGGAGGGTGGAGCACTGCTTCCTCCCTCGCCTGCCCTGTAAGCAGCAAAACTCAAATGAGG-CCCAGAAGGGCTGAATCCCATTATGGTGAGAGGCCTCATC--CACGCTGTCACTCAAAGAGATGATCCATCCTAACATACACAACTCAGCTCTTTCTGACCTGCTGGCCACTTAAACTGTCAAGACGCAATAAAATCGTATCCGTGAGGATT------AAGCACACAGTAGAAATAAAGGTACAGAActgctttcaaggaacttaaaacctaattgaggagacaaaacaagcatccattaaattagagacaaatatgaaaat-----actaACCAGTATCTGAGGTTACATGATGTTGACGATGCTTCCTATAGAGAGACGTTGTCTCTACATGGAAGGTCATTGCATGTGAAAGCTGAGGCCGGTTTGGGGGAGGAGGTAAAACTTTACTGGAGCATCAAGTAAACTCTATTAGGTTTTTGCCTGGCA-------GATGGGAGTGCCAGTCACTGAGTAATAGAAAATAGTAGGGAAATTTGAAAGACTTAATACA------TAAAGAAAAAGACTCCAGAAAAGAAGTGTTCA---AGCTTACCAAGAATCTCACTCCTTTTAAGGTCATTTAAAATCATCCTACTCT-GGATGTTTTCCCAGACTATCAACATCATGGTTCATATTAAAGTCTTGAGAAGTCTTCT---GGCTGATAAGGACACTGGAACCTTCGCCA-TTTTATCTAACTTTTTACCTTGGAAATTGCCTAGTTGATCTCAAGCAGAGCCTAAGCCTGGTTAAATGCCACAAAATGTCTCAAGTCTATTAAGTTC-----CTGGATTCTAGCAAAGAAAAAGGTTGGGAATGAGCCCTGGAGTAAGATCAAAAACCAGGAAAATCTAATACTTTCCTTCTTGTATG
s HiC_scaffold_1 139077778 1321 - 233722169 TCTTGACAAATCCCAAAGAACTTAAAATTGGAG---TCACTGGTTAGGATAAAAACACAATTATAGATCTGagaaaaa----atgatttgaaa-tCTAAGATCAGTTTAATGACAGAAAGCGAGGAGt-ttttgcttctgtgtgacaGCAGAAAGGGGTAAAAGGTAGAAATGCTCTGCCTGGGTACCCATGCCAGTCACCCTGCATGGCATGACGTGAGATGAAGCCATCTGCTGACTCTCAGAGATATAATTACTAGCAGGGTGGGGGTGTAATTAAAGTAAGGATAAATTACCttgaagaagataaaaattaagaattattaaTGATCACAATAATTATCCCTTTTATACCTCAGATTCATGAAATGCTTTACAAGCTGTAATTATCACAGCTCCCCTGTGAGGAAAGGATTCATATCTTACAGCTTCTCATTCAACAGAAAGGTGAAGTGATGGACACAGGAGAAGGGAG---AAGCAGAGTTCCACCTCCCCTATCATCTGCCTTGTACGTGGTGAAACTAGAAAGAGGCCCCAGAAGGGCTTGCTCCCATTATGTTGAGTACCCTCCTCCTCAAGCCATCACCCAAACAGATGGTCCCGCCCAAAGTAAGCAACTCATCTCATTCTGACCTGTTGGCCACTTAAACTGCC----------ACAATCATATCAGCAAGGATTTTATTAAACTCTTCATGtgaagaaaagatacaactcaacTTTCAAGGAATTTGAAACCC--TTG-------AAAGTAAATAGTTGTTAAATTA---ACAaatatgaaaattacacattaacTAGCACT--AGGTTGTATGAAGGTGACCATGCACACTGTCGGGAGAAATT---TGTTACTGGAAGATCA---------AAGCTTAAGGAAAGTTTTGAGAAGGAGGCTAATCCTATGTGGACCCTCAAGTAAACTA---TAGATTGTGGACTGGCAAACATGGGGTGGGAGAG---GTCAATGAACAAGAAGAACCAATAGGAAAACTTGAAAGACTTAACACattatgttaaagaaaaaacCTTCATTGAAGAGGTATGGAGAGAGTTTACGAAAGA-------------------ATCTAAAATCATCCTGCCTTGGGACATTTTCCCACTGTGTCAATGTCAAGGCTCctaatgagat-ttaaaaaaccTCCTTTAAACTGAAGATGACACTGAAACCTTTCCTGTTTTtacctaaattttcattttgt-ggttTTCTAACTGATCACAGACAG-GTCTGGACATGA-TAAATGCCACAGAAAG--TCAAAtctattgtcttctttttctgagttcaaaca---aaaaagatgggaaatgagcactcagatgaaat-aaaagccagaaaaacct-atatttctttgtttgtttg

a score=134779
s chr3            93438951 5728 + 160039680 [encoded data, 6327 characters]
s HiC_scaffold_1 139079465 5359 - 233722169 [encoded data, 6327 characters]

a score=5313
s chr3            93442286 199 + 160039680 AATCCTATTTTATTGTTCAGGTTTACTTGAATTTTAAGAAAAAATGTCTCCACTTATAAGAAGCATTGTCGATATCACTGAAGTTTTCAATCAATATGCATCACAAAGTTGTGATGGAGCATCACTTAGCAAGAAAGACCTGAAAAACCTCCTTGAGAGAGAACTTGGAGATGTCCTTCAGGTAAGACCTCACATACAC
s HiC_scaffold_1 139035775 195 - 233722169 aatcttgtttcttcttttaggtTTGCCTATATTTTCC---AAAATGCCTCAATTGCTGAACAGCATACTCAGTGTGATCAGAGTGTTCCAGGAATATGCCAAAGAAAATGGAGACTGTACCTCACTATGCAAAAAGGAGCTGAAGCAGCTGCTGTTGACTGAGTTTGGAGACATCCTACGGGTAAGA-TTCATAGACAC

a score=5194
s chr3            93442301 175 + 160039680 TTCAGGTTTACTTGAATTTTAAGAAAAAATGTCTCCACTTATAAGAAGCATTGTCGATATCACTGAAGTTTTCAATCAATATGCATCACAAAGTTGTGATGGAGCATCAC----TTAGCAAGAAAGACCTGAAAAACCTCCTTGAGAGAGAACTTGGAGATGTCCTTCAGGTAAGACCT
s HiC_scaffold_1 138965650 174 - 233722169 tttAGGTTAACTTAAATTTGCA-AAAAGATGCCTAAACTCCTGCAAGGCATTGTCACTGTCATTGATGTTTTCTACCAATATGCTACCCAGCATGG----GGAGTGTGACAAGTTGAACAAGGAAGAGCTAAAAGAACTTTTGGAAAATGAATTTCACGAAGTTCTAAAGGTAATAACT

a score=21552
s chr3            93443531 805 + 160039680 CAGAGCTAGGCGAGAAGAGAGCCCTGCCCAATGAAAAGAGGAACCTGTCACAAGATCGCAGGCAAGAAGACC----AAAGGAGATTCGAGCCCCGAAGCAG--------ACAACTGGACGAAGA---ACCTGGGC----------GCCGAAGCTGGCAGAAGAGACGTGAGCAG------------GAGGAGCGCGCTGAGGAGCAGCGGCTG------GAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAA---------GAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTT-GGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTA-GAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGA
s HiC_scaffold_1 139083970 850 - 233722169 CAGAGCAGTGCGAGAAG---GCGCTCCAGAAGGAAAATGAGCGTCT---ACAAAGGCAGGAGCGACAGGAGCTCAAGAGGGAGAGCCGAGAAGAGAGGCAGCTGCGGCGGCACAGGGGCGAGGACAGACGCGAGCAGATGGAGAGGCTCGAGCAGG-AGGAGAGACGCGAGCAGCAACTGAGGCGAGAGCAGGAGACTCAAGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGAC------AAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCG-AGCAGCTG-CTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGC---------GAGCAACAGCTG---AGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAG--GA----------GAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGA

a score=18647
s chr3            93443563 762 + 160039680 GAAAAGAGGAACCTGT-----CACAAGATCG----CAGGCAAGAAGACCAAAGGAGATTCGAGCCCCGAAGCAGA-----------CAACTGGACGAAGAACCTGGGCGCCGAAGCTGGCAGAAGAGACGTGAGCAGGAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTT-----------GCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCG----------GAGGAGTTTTCTGAGGTAGAGGAAC---AGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAAC-AGAAGAGAGAA-GGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGC------AAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcaggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGG------AACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCA------GGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAG
s HiC_scaffold_1 139084053 774 - 233722169 GAAGAGAGGCAGCTGCGGCGGCACAGGGGCGAGGACAGACGCGAGCAGATGGAGAGGCTCGAGCA--GGAGGAGAGACGCGAGCAGCAACTGAGGCGAGAGCAGGAGACTCAAGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAG------CAGGTGGAAAAGCTCGA---GCAAGACAGGCGTGA---GCAGCAACTG---AGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGC-------GAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGC-----GAGCTGGAGAAGCGCGAGGAGAGGCGCGAGCAACAG-----CTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCT------------GAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGA------------GCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=23096
s chr3            93443563 821 + 160039680 GAAAAGAGGAACCTGTCACAAGATCGCAGGCAAGAAGACCAAAGGAGA-TTCGAGCCCCGAAGCAG-ACAACTGGACG-------AAGAACCTGGGCGCCGAAGCTGGCAGAAGAGACGTGAGC---AGGAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCAC---CGCGATGAAGAGCAGAGACT---------GCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCG-----GAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGAGAGGCAGGAACT----CAAGGGCAAGGGCCAAACAGAAGAGAGAAGG----CTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGC------AAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAAC------TGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGTGAGCAAGAGCTAAGACGC------------------GAGCAAGAGCTGAGGCAGGAGCTGGCTGAGGAGGACGAGCTGACGCGGATCCGGGAACCCGACGAGAG
s HiC_scaffold_1 139083912 884 - 233722169 GAGAGGCAGAATCTGAGAAAAGACCGCGGGGAGGAGGAGCAACAGCCACTTCCGGAACCAGAGCAGTGCGAGAAGGCGCTCCAGAAGGAAAATGAGCGTCTACAAAGGCAGGAGCGACAGGAGCTCAAGAGGGAGAGCCGAGAAGAGAGGCAGCTGCGGCGGCACAGGGGCGAGGACAGACGCGAGCAGATGGAGAGGCTCGAGCAGGAGGAGAGACGCGAGCAGCAA---CTGAGGCGA---------GAGCAGGAGACTCA-----AGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAAC--AAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAG---AAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAG

a score=7101
s chr3            93443587 414 + 160039680 CGCAGGCAAGAAGACCAAAGGAGATTCGAGCCCCGAAGCAGACAACTGGA---CGAAGAACCTGGGCGCCGAAGCTGGCAGAAGAGACGTGAGCAGGAGGAGC-GCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCG-----GAGGAGTTTTCTGAG--GTAGAGGAACAGCAAAG-GCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAG------GCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAG
s HiC_scaffold_1 139084437 390 - 233722169 CGCGAGCAGGAGGA------GAGGCGCGAGC---------AACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGT----GAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGC-------GCGAG-----CAACAGCTGAGG------CGCGAAGAGGAGGAGA-----GGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=22479
s chr3            93443594 1046 + 160039680 AAGAAGACCAAAG------------GAGATTCGA---GCCCCGAAGCAGACAACTGGACGAAGAACCTGGGCGCCGAAGCTGGCAGAAGAGACGTGAGCAGGAGGAGC---GCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAG-------AGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGC------CGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGA------------------GGAACAGCAAAGGC------------------AAGAGAGGCAGG------AACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAG---------------TTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC---AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGA------GCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggag---------------------------ctgaggcaggagctg------aggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAG------GCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGG------AACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTGGCTGAGGAGGACGAGCTGACGCGGATCCGGGAACCCGACGAGAGCATTACCCAGAGGTGGCAGTGGCAGCTCGAAAACGAGGCAGACGCCCGTCAGAACAAGGTCTACTCTAGGCCTAGCAGGCAGGAGCAGAGGCTTCGCCAGGAGCTGGGGGAGCGTCAGCTCCGGGAGCAGGAGGAGCAGCGCCGCGACCTCCAACAGGAGCGTCCCGCTGAGGAGGCGCGCCAGCGCAACCAGTGGGAGAGGCCGCAGCGGGCGGAGGAGCGCCTGGAGCAGGAGCAGCGGTTCCGCGACAGGGAG
s HiC_scaffold_1 139083742 1085 - 233722169 AAGaagaccaaagaaagaaacaagagataTTTGAACAGCCCCGA------------GAAGAGGAGCAGCGGCTGCAAAG---GCGAGAACTACAAGAACTAGAAGAGCTCCGCGCAGAGGAACAGCTGC----GCACGTTCAAGGGTCGCGACGCGGAGGAGTTTGCTGAGGAAAAACTCCAAAGGCGAGAGAGGCAGAATCTGAGAAAAGACCGCGGGGAGGAGGAGCAACAGCCACTT--CCGGAACCAGAGCAGTG-CGAGAAGGCGCTCCAGAAGGAAAATGAGCGTCTACAAAGGCAGGAGCGACAGGAGCTCAAGAGGGAGAGCCGAGAAGAGAGGCAGCTGCGGCGGCACAGGGGCGAGG-----ACAGACGCGAGCAGA-TGGAGAGGCTCGAGCAGGAGGAGAGACGCGAGCAGCAACTGAGGCGAGAGCAGGAGACTCAAGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGG------------AGAAGCGTGAGCAGCAGCT-------GAGGC-----------------------------------GCAAAGAGGAGGAGAGGC---------------GCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCG------CGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGG-CGCA--AAGCGGAGGAGAGGCGCGAGCAACAGCTGAGG---CGCGAAGAGGAG

a score=19700
s chr3            93443605 672 + 160039680 AGGAGATTCGAGCCCCGAAGCAGAC-----AACTGGACGAAGAACCTGGGC----GCCGAAGCT--GGCAGAAGAGACGTGAGCAGGA---GGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGC-GCTACAGGCAGCACCGCGATGAAGAGC---AGAGACTGCAAAGGCGAGAACTGCAA---------GAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACA------GAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAG------GCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGG------AACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCA------GGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAG
s HiC_scaffold_1 139084153 674 - 233722169 AGGAGACTCAAGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTA-AGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGC-------GAGGAGAGGCGC-------GAGCAACAGCTGAGGCGCG-------------AGCTGGAGGAGAAGCG---------TGAGCAGCAGCTGAGGCGCAA--------------AGAGGAGG----AGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=22946
s chr3            93443608 961 + 160039680 AGATTCGAGCCCCGAAGCAGACAACTGGACGAAGAACCTGGGCGCCGAAGCTGGCAGAA---GAGACGTGAGCAGGAGGAGCGCGCTGAGGAGCAGCGGCTG------------GAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACT---GGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACG------------CGGAGGAGTTTTCTGAGGTAGAG------GAACAGCAA---AGGCAAGAGAGGCAGGA-ACTCAAGGGCAAGGGC-------CAAACAGAAGAGAGAAGGCT---------GCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTG---AGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAAC------TGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTGGCTGAGGAGGACGAGCTGACGCGGATCCGGGAACCCGACGAGAGCATTACCCAGAGGTGGCAGTGGCAGCTCGAAAACGAGGCAGACGCCCGTCAGAACAAGGTCTACTCTAGGCCTAGCAGGCAGGAGCAGAGGCTTCGCCAGGAGCTGGGGGAGCGTCAGCTCCGGGAGCAGGAGGAGCAGCGCCGCGACCTCCAACAGGAGCGTCCCGCTGAGGAGGCGCGCCAGC
s HiC_scaffold_1 139083865 939 - 233722169 AGGGTCGCGACGCGGAGGAGTTTGCTG-AGGAAAAACTCCAAAGGCGAGAGAGGCAGAATCTGAGAAAAGACCGCGGGGAG------GAGGAGCAACAGCCACTTCCGGAACCAGAGCAGTGCGAGAAGGCGCTCCAGAAGGAAAATGAGCGTCTACAAAGGCAGGAGCGACAGGAGCTCAAGAGGGAGAGCCGAGAAGAGAGGCAGCTGC---GGCGGCACAGGGGCGAGGACAGACGCGAGCAGATGGAGAGGCTCGAGCAGGAGGAGAGACGCGAGCAGCAACTGAGGCGAGAG---CAGGAGACTCAAGAACAACAGCTGAGGCGCGAACAG--GGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGC---GTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGG------------AGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGC------GCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAA---GAGGAGG---------AGAGGCGCGAGCAACAGCT-------GAGGC------------------------------GCCAAG-----AGGAGGAGAGGCGCGAGCAACAGCTGAGG------------CGCGAGCAGGAGGAGAAG---CGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGC

a score=9555
s chr3            93443630 449 + 160039680 AACTGGACGAAGAACCTGGGC----GCCGAAGCT-----GGCAGAAGAGACGTGAGCAGGAGGAGCG-CGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTG---CAAGAACTGGAGGAACGCCTTG--CAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTA-GAGGAACAGCAAAGGC---AAGAGAGGCAGGAACTCAAG-----GGCAAGGGCCAAACAGAAGAGAGAAG--------GCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAG------GCAAGAGCTGAGGCGCGAGCAGGAG
s HiC_scaffold_1 139084387 440 - 233722169 AGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGC----GAGCAACAGCTGAGGC------------------GCGAAGAGGAGGAGAG---GCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGG--AGAGGCGCGAGCAGGAGGAG-------AGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAG-GAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGG------------AGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=11050
s chr3            93443639 494 + 160039680 AAGAACCTGGGCGCCGAAGCTGGCAGAAGAGACGTGAGCAGGAG---GAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTG-------CAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAG------GCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggag
s HiC_scaffold_1 139084372 455 - 233722169 AACAGCTGAGGCGC--GAGCTGG-AGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGC------GCGAGCAACAGCTGAGGC-GCGAAGAGGAGGAGAGGCGCGAGCAACAGCTG-AGGCGCGA---GCAGGAGGAGAAGCGT-------GAGCAGCAGCTGAGGCGCAAAG----------AGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGG------------AGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAG--GA----------GAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=21457
s chr3            93443648 725 + 160039680 GGCGCCGAAGCTGGCAGAAGAGACGTGAGCAG---GAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTG---CAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTG----------GCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACA---GCAAAGGC---------AAGAGAGGCAGGAAC----TCAAGGGCAAGGGCCA-AACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGC------AAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcagg------agctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGG------AACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTGGCTGAGGAGGACGAGCTGACGCGGATCCGGGAA
s HiC_scaffold_1 139084069 752 - 233722169 GGCGGCACAGGGGCGAGGACAGACGCGAGCAGATGGAGAGGCTCGAGCAGGAGGAGAGACGCGAGCAGCAACTGAGGCG------------AGAGCAGGAGACTCAAGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAG----AGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGA--GCTGGAGAAGCGC------GAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAG------------CTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAA

a score=17165
s chr3            93443661 580 + 160039680 GCAGAAGAGACGTGAGCAGGAGGAGCGCGCTGAGGAGCAGC---GGCTGGAGCAGCGCTACAGGC---AGCA-CCGCGATGAAG--AGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCA-AGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGC------AAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAA
s HiC_scaffold_1 139084238 583 - 233722169 GCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTG---AGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGCG---AGCAACAGCTG---------------AGGCGCGAGCTGGAGGAG------AAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAG---GAGAGGCGCGAGCAA-CAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAA

a score=15591
s chr3            93443661 520 + 160039680 GCAGAAGAGACGTGAGCAGGAGGAGCGCGCTGAG------GAGCAGCGGCTGGAGCA-GCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAA-----GGGTCGTGACGCGGAGGAGTTTTCTGAGGTA-GAGGAACAGCAAAGGCAAGAGAGGCAGGA-ACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAG------GCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggca------ggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAG
s HiC_scaffold_1 139084328 499 - 233722169 GCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGG-AGAAGCGTGAGCAGCAGCTGAGGC-GCAAAGAGGAGGA------------GAGGCGCGA---GCAGGAGGAGAGGCGC-------GAGCAACAGCTGAGGCGCGAAGAGGAGGAG-------AGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGG----AGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGG------------AGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=7892
s chr3            93443663 386 + 160039680 AGAAGAGACGTGAGCAGGAG---GAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGC---AGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAA-----GGGTCGTGACGCGGAGGAGTTTTCTGAGGTA-GAGGAACAGCAAAGGCAAGAGAGGCAGGA-ACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGG--------------CTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAG
s HiC_scaffold_1 139084447 380 - 233722169 AGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGA----GAGGCGCGA---GCAGGAGGAGAGGCGC-------GAGCAACAGCTGAGGCGCGAAGAGGAGGAG-------AGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAA-----AGCGGAGG-------AGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=12118
s chr3            93443663 481 + 160039680 AGAAGAGACGTGAGCAG-----GAGGAGCGCGCTG-AGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACT---------GCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCG-----GAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCA-AGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGC------AAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcagga
s HiC_scaffold_1 139084357 463 - 233722169 AGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGT---GAGCAGCA------GCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGA---GCAACAGCTGAGG------CGCGAAGAGGAGGAGA-----GGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAG------AAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAG---GAGAGGCGCGAGCAA-CAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGG------------AGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGA

a score=13732
s chr3            93443663 530 + 160039680 AGAAGAGACGTGAGCAG-----GAGGAGCGCGC------TGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTA-GAGGAACAGCAAAGGC---AAGAGAGGCAGGAACTCAAG-----GGCAAGGGCCAAACAGAAGAGAGAAG--------GCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGC------AAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctga------ggcaggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAA
s HiC_scaffold_1 139084294 527 - 233722169 AGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGA--GCTGGAGAAGCGCGAGGAGAGGCGC---------GAGCA---ACAGCTGAGGCGCGAGCTGGA------GGAGAAGCGT-GAGCAGCAGCTGAGGCGCAAAGAGGAGG--AGAGGCGCGAGCAGGAGGAG-------AGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAG-GAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCT------------GAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAA

a score=14137
s chr3            93443664 625 + 160039680 GAAGAGACGTGAGCAGGAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGAC---TGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGG-TCGTGACGCG-GAGGAGTTTTCTGAGGTA-GAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGC-GCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTG------AGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctga------ggcaggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAA
s HiC_scaffold_1 139084190 631 - 233722169 GGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGC--AACTGAGGCGCGAGCTGGAGAAGCGCGAGGAG-------AGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAG---AAGCGTGAGCAGCAG-CTGAGGCGCAAAG-----AGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGG-CGCGAGCAACAGCTGAGGCGCGAG------CAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAA

a score=16377
s chr3            93443668 561 + 160039680 AGACGTGAGCAGGAGGAGCGCGCTGAGGAGCAGC---GGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAG------GCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcagg------agctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCA------GGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAG
s HiC_scaffold_1 139084281 546 - 233722169 AGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCG----CGAGCTGGAGAAGCGCGA--GGAGAGGCGCGA---GCAACAGCTG-AGGCGCGAGCTGGAGGAGAAGCGT----------GAGCAGCAGCTGAGGCGCAAAG----------AGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAG--GA----------GAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAG

a score=21844
s chr3            93443675 708 + 160039680 AGCAGGAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGC-----AAAGGCGAGAACTG-CAAGAACTGGAGGAACGCCTTG--CAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGG--AGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGC---AAGAGAGGCAGGAACTCAAG----------GGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAAC---------------AGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAG------AGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcagg------agctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTGGCTGAGGAGGACGAGCTGACGCGGATCCGGGAACCCGACGAGA
s HiC_scaffold_1 139083997 762 - 233722169 AGGAAAATGAGCGTCTACAAAGGCAGGAGCGACAGGAGCTCAAGAGGGAGAGCCGAGAAGAGAGGCAGCTGCGGCGGCACAGGGGCGAGGACAGACGCGAGCAGATGGAGAGGCTCGAGCAGGAGGAGAGACGC-------GAGCAGCAACTGAGGCGAGAGCAGGAGACTCA------AGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAG-CAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGA

a score=19895
s chr3            93443678 669 + 160039680 AGGAGGAGCGCGCTGAGGAGCAGCGGCTGGAGCAGCGCTACAGGCAGCACCGCGATGAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTG-ACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCT---GCAGAAGCGCAGGCAAGAAGAGCTAC------GCGAACCCCTGCTAAGGCGCGATCTGGAG---------TTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTG------AGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcagg------------------agctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTG--GCTGAGG
s HiC_scaffold_1 139084084 695 - 233722169 AGGACAGACGCGAGCAGATGGAGAGGCTCGAGCAG------GAGGAGAGACGCGA------GCAGCAACTG---AGGCGAGAGCAGGAGACTCAAGAACAACAGCT----------GAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTC---GAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGG---AGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGG------------AGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGG

a score=18043
s chr3            93443734 792 + 160039680 GAAGAGCAGAGACTGCAAAGGCGAGAACTGCAAGAACTGGAGGAACGCCTTGCAGAGAAAGAGCCGCTTGGCTGGAGTAAGGGTCGTGACGCGGAGGAGTTTTCTGAGGTAGAGGAACAGCAAAGGCAAGA---------GAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTAC------GCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcagg------agctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTG--GCTGAGG----AGGACGAGCTGACGCGGATCCGGGAACCCGACGAGAGCATTACCCAGAGGTGGCAGTGGCAGCTCGAAAACGAGGCAGACGCCCGTCAGAACAAGGTCTACTCTAGGCCTAGCAGGCAGGAGCAGAGGCTTCGCCAGGAGCTGGGGGAGCGTCAGCTCCGGGAGCAGGAGGAGCAGCGC
s HiC_scaffold_1 139084053 747 - 233722169 GAAGAGAGGCAGCTGCGGCGGC-ACAGGGGCGAGGACAGACGCGA------GCAGATGGAGAG-------GCTCGAGCAGGAGGAGAGACGCG-AGCAGCAA-CTGAGGCGA--GAGCAGGAGACTCAAGAACAACAGCTGAGGCGCGAAC-AGGGGGAAAGGCTTGAGCAG--GTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAG---AAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAG------------CTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGA-----------------GGCGCGAGCA-------------ACAGCTGAGGCGCCAAGAGGAGG-AGAGGCGC----GAGCAACAGCTG----AGGC---GCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGG------------CGCAAAGCGGAGGAGAGGCGC

a score=11248
s chr3            93443845 391 + 160039680 GAGGAACAGCAAAGGCAAGA---------GAGGCAGGAACTCAAGGGCAAGGGCC-AAACAGAAGAGAGAAG--------GCTGCAGAAGCGCAGGCAAGAA---------GAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAG------------------AGCTAAGGCGCGAgcaggagctgag------gcaggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC
s HiC_scaffold_1 139084233 433 - 233722169 GAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAAC--AACTGCTAAGGCTTGAGCAGGAG-GAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAGAAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCA------------ACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGC

a score=8709
s chr3            93443861 327 + 160039680 AAGAGAGGCAGGAACTCAAGGGCAAGGGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAGAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcaggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGC
s HiC_scaffold_1 139084357 309 - 233722169 AGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAG----GAGGA--------GAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAAC------AGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGC

a score=15911
s chr3            93443887 737 + 160039680 GGCCAAACAGAAGAGAGAAGGCTGCAGAAGCGCAGGCAAGAAGAGCTACGCGAACCCCTGCTAAGGCGCGATCTGGAGTTGAGGCGCGAACAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACAG------AGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGA---GCTGAGGCAAGAGCTGAGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggcaggagc------tgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGC------AGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGCTG--GCTGAGG----AGGACGAGCTGACGCG-GATCCGGGAACCCGACGAGAGCATTACCC-----------------AGAGGTGGCAGTGGCAGCTCGAAAACGAGGCAGACGCCCGTCAGAACAAGGTCTACTCTAGGCCTAGCAGGCAGGAGCAGAGGCTTCGCCAGGAGCTGGGGGAGCGTCAGCTCCGGGAGCAGGAGGAGCAGCGCCGCGACCTCCAACAGGAGCGTCCCGCTGAGGAGGCGCGCCAGCGCAACCAGTGGGAGAGGCCGCAGCGGGCGGAGGAGCGCCTGGAGCAGGAGCAGCG
s HiC_scaffold_1 139084069 730 - 233722169 GGCGGCACAGGGGCGAGGA-----CAGA--CGCGAGCAGATGGAGAGGCTCGAGCAGGAGGAGAGACGCGAGCAGCAACTGAGGCGAGAGCAGGAG---ACTCAAGAACAACAGCTGAGGCGCGAACAGGGGGAAAGGCTTGAGCAGGTGGAAAAGCTCGAGCAAGACAGGCGTGAGCAGCAACTGAGGCGAGAACAAGAGGAGAGACAAGAACAACTGCTAAGGCTTGAGCAGGAGGAGAGGCGCGAGCAGCTGCTAAGGCGCGAGCAGCAACTGAGGCGCGAGCTGGAG---AAGCGCGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAG------------CAGGAGGAG---------AAGC---GTGAGCAGCAGCTGAGG---CGCAAAGAGGAGGAGAGGCGC---------GAGCAACAGCTGAGGCGCCAAG------AGGAGGAGAGGCGC---GAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGCGGAGGAGAGGCG

a score=15157
s chr3            93444015 348 + 160039680 GAGGCGCGAGCAGGAGCTAAGGCGCGAGCAGGAGCTGAGGCAAGAGCTG------AGGCGCGAGCAGGAGCTGAATCGAAGGCAGGAGCTGAGGCGCGAACAAGAGCTAAGGCGCGAgcaggagctgaggc------aggagctgaggcGCGAGCAGGAGCTAAGGCGCGAGCAGGAGTTGA------GGCAGGAACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAGGCAGG------AACTGAGGCGCGAGCAAGAGCTAAGGCGCGAGCAGGAGTTGAG------GCAGGAACTGAGGCGTGAGCAAGAGCTAAGACGCGAGCAAGAGCTGAGGCAGGAGC--TGGCTGAGG----AGGACGAGCTGACGCG
s HiC_scaffold_1 139084349 378 - 233722169 GAAGCGCGAGGAG------AGGCGCGAGCAACAGCTGAGGCGCGAGCTGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCGAGCAGGAGGAGAAGCGTGAGCAGCAGCTGAGGCGCAAAGAGGAGGAGAGGCGCGAGCAACAGCTGAGGCGCCAAGAGGAGGAGAGGCG

a score=47290
s chr3            93447745 1510 + 160039680 CACCCACGCGAGGAACGCGAGGAACAGCAGTTGCGCAGGGAGAAGCGAGATGGT-CAATACCTGGCTGAG-GAGCAGTTTGCCAGGGATACGATTCGTCGCCAGGAACAAGAACTACGTCAAGAAGAGGAACAAAGACGTCGCCAAGAGCGGGAGAGAAAATTCCAAGAAGAGCAAATCCGTCGTAGGCAAGAGGAGCAGAGGCGCCGCCAAATC---------------------------------CTGGAGCCTGGTACACGCCAGTTTGCCAATGTCCCAGTG---CGTTCCAGCCCTCTCTATGAGTACATCCAGGAGCAGAGGTCTCAATACCGCCCTTAAAAGATGCTGCAAACATCCTGGCACCAGCCAAAGCTTCAAGCAAAAGAAAATGAGAAACACTAGGGTATCCAGCGATAACTCAAGTGTTTCTGGTTGTGGGAAAACTCTCTGATCTTAGAATGTGTCTTTTCTTACAGAATCTTAAACTATACTAATTTCATTTCCTTTAATTCCTGTCTTTCATTCTTCCACAGGTAGTTCTTTTTTGCAAGATGTCTTTGTTCTTTAGTGAAGATATGATGTGCACTTTTAAAACT--AAGCCATTTAATTTTTTGAACGAATTTTCTTTGAGGAGCACATTGGTTTATTGCCTTCTTAAATAACAAGAATAATGCAAGCAATCTGATATTCAAAGTAATTGAATCGCTACTTT--TAGTGGTGGATCATTTTATCTAAAGCTTT---CATTTTATGAGTTCAAGTTGACATTTTC----TTTGGCTTAAATTTTGT----CTTTACCTCCAAATGGTTTTCTT--AGGT-----------TTTGTTGCAAAATTATGACAGATTCCATCAGCAGGCTGAAACTTAGATCCCTCAGATAATGTAGGAGGAAGAGGATTTATGCAG-AAAATAATATATGAAGTCAGTTCATAACT-GAACAAAT-CTTGTTAAGAGAAATGCTTGAC--AGAAAATTATAATTTGGCATTATATTTTTTATATT---TTGCAT-----CATCTAAAATCTCATGAAGTGAAAGCAAGGTGGTCCTCAAAC----AACTCAAATTTAAA------ACTGTAG-TTGTAGCACTCTGTTCCATTTCCCCAAGTCTTATTGAGTTTGAGAATTTTTCTACTTTTGTACATTTTGGTTTAGAGGGAACCTACTCAAGATTCTGTAAACATTTGTCTTG-TTTGGGTCCAATAAAAGTTCACAGA------GTGATGGCAAAAGGAAAAGGGAA---ATGTATGAACAGAGG-ACAAATTTCTAGAGGTCTCTTTATTATACTTAGATGCTCACAGTACTTTGAGGCTTTATACTACCTGGAAGACATTCTTGTTCAAATAATTGGACTG--TTAAAAATCAATAAATGTTTGGCAAATATTTTTTCTTGTCTGTTTTAATTATGTGCCTATCATAACTCA----TATATAGTCTGGAAATT---CATGTATTCCCAATATCTTATGG-TAGTTTTACTATTAGCTATGTCCAAATAAG-AAAGGAAGAAAGAAACTTTGATTTTTTTTTCTACAAATTTTCCCAATTAAGGTGACTCCTATATTATTT
s HiC_scaffold_1 139087860 1522 - 233722169 CAGCTGCGTCAGGAAAGAGAGGAG-AGCAGCTGCGC-GCCAGAAAAGACACAGTTCTCTACCAATCTGAAAGAGCCCTTTGTCAGGGAGAAGAATAATCT---GGAGCAAGAACTGA---AGGAAGAAGAACAGAGACGTCGCCTGGAGCGTGAAAGGAAATTCCAAGAAGAGCAAGTTGGACGCCAAGAGGAGGTGCAAAGCGATAGCAAAGTCTGGGAGAAACAAGCCCGAGAAGAAAAGAGTGATCTGAAGTATGGCAAACGAGAGTTTGCCCATGCTCCAGTGGTGCGCTCCAGTCCTCTCTATGAGTACATCCAAGAGCAGAGATCTCAGTTCCGCCCGTAAGAGCTGCTAC-CACATGATAATCCAGGCCATAGcttcaaaggaaagaaagtgagaaGCACTG-----------------------CTTTCTGGTTGTGGGAAAATTCTCTAAAgttgaaatatgt-ttttcttcCAAAATCTTAAGCTACAGTTGTTTCATT-------ACTCCTGTCTTTTATTCTTCCTCTAGTAGTTCTTTACTGCAAGATGTCTTTGCTCTTTGGTGAAGAGTtggtgtgcatttttaaaaacaaaagtcatttAA------------------TTTGAGGAACAAACTGAT---------------GTACCAAGAATAGT----ACAATTTGAGGCTCAAGGCAACTAAATCTAAATTTTCATAATGGTTGATCATCTTG--TGGAGatttacatgtttttaaagtgaaagttgtttttttcccctttgggcCTAAATTTTATTAAGCTTTACCACCAAAATGCTTTTTTGGaggtatctgtgtgtgtgtgtgtcatgacTGT-ACAGATTCCACTAGGTGAATGAATTTTTG---CAGTACTTAGTGCAGGAGGA--ATGATTTCTGCAGAAAAATTCTTTGTGAACTCAGCCCTTAACtggaataaatatttgctaagaaTAAGATTTAACTTAAAGATTTagaatttgggat--tttttttaacattgaacTGCACATAAACACTTAATATCTCATGAAGCAAAAGCAAAGTGCTTCTCAACCTCAGAGCTCAAA--TAAAGTGTCTACTGTAGTTTGTAGTGCTCAGTTCTAGTCCTCCAAGTTTTGATGGGTTTGAGAATATTaccatttttgttaattttaatttagagGGAACCTAATCAA-ATCCTATAAACATCTGTCTTGATATAGAGCCAATAAGTTGTCCCAGAAGTCGTatgtaaggaaaagaaagggggaaAGTATATGTGAACAGAGGTGCAAATTTGTAAAGGTC-CTTGACAAGACTTA-CCACTCCAGTTTCTTTGATACCTGTTACTACCTTGGAGAACTTCTTGCTGAAATAATTATACTgtatgaaaaattaataaatgtttggcaaataatgatttttgtctgttttaacTGTGTGTCAGTCATAACTCAAGATCTAATCATCTGGAGACTTGACATAATTTCTCA----TTCACGGTTATTTTTGTTATCATTTATCCCCaaatatgaaaaggaagaaaaaaacc----tacTTTTCCCATCCATTTTTCCCAGTTGGGGTGAACTTTATATTATTT

a score=120941
s chr3            93466925 4964 + 160039680 [encoded data, 5587 characters]
s HiC_scaffold_1 139129811 5278 - 233722169 [encoded data, 5587 characters]

a score=13945
s chr3            93478082 702 + 160039680 TGTAAAAAAAGGTTGCATAAAAACTCAAGTTCACCAAGTAACCCTGAACATTACCTAAGGAACCTGTTTTTAGAGATGCCT-AAGCCTCATATTATGAAGTAACACACTTGT-GTCTGC--------TGAAAGACAATATGAATTCTAGAGAAGTTAGGTAACTTCTC-ATGGTCACTTAGAATTTTGCAGCCTGAGCCAAGACTT-GTCCACAAGGTGCCTAAGCTCC-AGCCCATCTCCTTAAGTTTCTGAGATTTGCCTCCCTAGGTAGGGGTTACCCCAGCATATTCCTGTTTGGCTTCATTGATGTGGGACATTCAGTATTGAAACCCATACATCTAAATGGAAGATTACTCTAATGGCAAAGGG--------------------------------------------TACTTCTGCCTTT-CCTTCCAGTCCAGCTTCCCTCAGGAGACATCATGCAGAGTCAGTAACAGCACTAA--TGATTCCAGGGATTTTGACAAGCCTGTTGAAGATGCCAATGTCCTGAATACTACCCCCTGATCAAAGACTCCAA-TAGGGCATGTGGCAGGCCGTTCCCCAGAGCTAATCAGCACCACCTCATAATTACACCTAATACCTCTTCTGCTTACCCCACTGATCCTCATGAAAATTCACACCACTCAGAGTGGCGTCATTCCTGATG-CTCTTACTCACA-GGTGCAGGAAGTCAGGGATTCTAATAG----ACAGAAATGTAATCT--TGCTCATCTCTCTGATGAAA
s HiC_scaffold_1 139141745 729 - 233722169 TGTTAAAAAACATCGCATAAA--TCTCAGTTCACCAACTAGTCTTAAACATAGGATA-GGAACCTCTCTCTAGAGATTTCTTGAACTTCATAAAAGGAAGTCA---GCTCATAGtctgcaaaaaaaacaaaaaactaagtgA--TCCAGAGAGGG-AAGTGACTTATCCATGGTCACTTATCCCTGGAGAGGCAGGGTCAAGCCTTAGCCCACAGACCACCTAAGTTCCCAGCCC-------TAGATT----AGATTTT--------------GGTTCTCTGAGCTTATTAGTTTTGTCCATCACCAAGA--GAGCATTCAGGTTCTGGGTCCATAAAGCTAAGTAGAatacagctaaaaaaaaaaaaaaaaaaaaagaagaagaagaagtcatAATGTAAAGAAACAGCTTATCACATCTACCTTTGCCTCCCAGTCCCATTCCCCACAGGAAACATCCTGCCTGGCCTATGACTCAGTCAAGCTGCTACCTGGGATTTGAACATACCTGTTGAAGATGGTGCTGCCCTCAATAGTGCCCC-TGATCAAAGCCTTCAAAGATAGCAGGCAGAGGCCAGTTTCCTGGAGCTGTTCAGAATCAGCCCATAATTATATCTAATACCCATTCTACTTGCCCTGCAGATTCACACAAAGGTGCACATTACTCTTA-----ATCATTCCTGATGCCTATTAGTCACATGGTAGAGGAAGCCAAGGAGTCCACtagttaaaaggaaaatgaatctgATGGCCCTCTCCCTGCAGAAA

a score=4164
s chr3           93480827 84 + 160039680 TGCTTTGGATATTGTTTGAATGCATCCCCAGAAGCTCACGTGCTGGAACCTTGGTCCTCATTGT--CAGTATAAGAGGTGGTTAGG
s HiC_scaffold_1 59834538 85 - 233722169 TGGTTTGGATATAGTGTGAAAGTATCCTCAGAGGTTCTTGTGCTGAAAGCTTGGTCCCCAGTGTGGCAGGGT-GGAGGTGGTTAGG

a score=5793
s chr3           93494702 148 + 160039680 GGTCAGAGGT------AATGTGTGAAAAATTTTCTCTGTTCTCTTGAGCCAAA-AACCCACAAAAATGCTACAAATCAAAAGGTTCAAAACTTTGTGTTCATTTTAAGAACATCCATCAAACTTTTCAGGTCGTCAAAAGCATGCATAATTTGAA
s HiC_scaffold_1 85108664 155 - 233722169 GGTCAGGGGTCCGGATGACCTGTGAAAATGGCTCGCTACCCTCTTGATCCAGAGAACGCCCCCAAATCATGCAAATCGAGAGGTTCAAATCTTTGTGTTCACTTTAAGAACACCCGTGAGACAGCTCAGGCCAGCAAGGGTGTGCACGTCTAGAA

a score=7833
s chr3            93495286 374 + 160039680 aaagaaagaaagagagagagagagaaaAGCTACCAACCTAAAAGATGTCACGTGAAACCTGTATGTGTGGTTCCAGTGAGACGGTGACAGAAGTAGCAA--ATGTGACCAGGCCAAACAGTGGTGTTGGACAAGGGGTCAGGGACCC-AAAAGGGTTCTGAGTTTCTAGTGTGAATGCTTTTAAATGCATA----------------------TTACAGTCACA--------------GACAGATCTA-ATAAGCAAAGCACCCCTGATGTGCTACTGTACCTACAGAGCCTGTGGATGGATTGTCCTACTCACGAGA-CTCCCGCTCAC---------------ACTGAAAA--ACAAATTTCTCCTAG------------------TCAGATGGAAAGGATACCCCTGAAGTAACAGGG-----------TTAGGCCAAGAGAATAAACCTAACATGAA
s HiC_scaffold_1 233280692 432 - 233722169 aaagagagagagagagagaatgagagaagc--------------------------AC---TGTGTGCCATTCCAGCATTACAATGCTGGAGTTAGTAGGGATGTGCCCAGGCCAAACAGTGGTGCTGGACCAAGGGTCAATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTACTGCTGAACTGAAGGGTTTAGATGTACATTCTGTGGCCATTGAACATACCCAGGTGAACAGAACACCCATGGCAAGTCACCATATTTACAGAGCTCATGGCTGGATTTACCCATACATGAGCTCTGCCTGCCACAGTGAGGGGATCCTTACTGAAAAGGACAAATTGTACCTAAACCAGAAGATGAAgttgcacaaaagaaaaagatacctcagaagaaactgaaaaaacaaaaacttatggCACAGGAATAAATCaagcataaa

a score=7859
s chr3           93495309 351 + 160039680 gaaaAGCTACCAA---CCTAAAAGATGTCACGTGAAACCTGTA---TGTGTGGTTCCAGTGA-GACGGTGACAGAAGTAGCAAATGTGACCAGGCCAAACAGTGGTGTTGGACAAGGGGTCAGGGACCC-AAAAGGGTTCTGAGTTTCTAGTGTGAATGCTTTTAAATGC-----------------------------------ATATTACAGTCACAG-ACAGATCTA-ATAAGCAAAGCACCCCTGATGTGCTACTGTACCTACAGAGCCTGTGGATGGATTGTCCTACTCACGAGACTCCCGCT--CACACTGAAA------------------AACAAATTTCTCCTAG------------------TCAGATGGAAAGGATACCCCTGAAGTAAC-----------AGGGTTAGGCCAAGAGAATAAACCTAACATGAA
s HiC_scaffold_1 23840412 444 - 233722169 GAAAGGCCACCAAGTACCTGAAGGAAGTCCCATTAAAGAAGCACTGTGTGCCATTCTGGCGTTGCCAATGGTGGAGATGGTAGGTGTGCCCAGGCTAAACAGTGGGGCTGGACACAGGGTTGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAAAGAGTAATGCTGAACTTCAAGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGTACTGCTGTATTTACAGAGCTCATGGCCAGAATAACCCATACATGAG-CTCCCCCTGCCACACTGAGATGATCCTTACTGAAAAGGAATCAATTGTTCTTAAACCAGAGGAGGAAGTAGCACAGAATAAAAAGATATCccagaagaaactaaagaaacaaaacattatagCATGGGAATAAattaagcataaa

a score=23175
s chr3            93514700 3122 + 160039680 AGATATTAAACTAACGGAGAGATTGGATCTTACCAATAGCTTTTTCCCATCCTCAACCGCACC-------CTTCTCTACTTGTGCTTTGATCTCACAGACACTTCCTGCCTACCCAGCTTACCTCCCATGCCCTTCCTTTTGAAACCTGCACTCAGGCCCCATCAAGCAAACTCCTTTCTTGTTTACCTCCTTCATACCTTCAACCCCATGTCCTTCTGT---ACACTTCCG--------ACTAAATCCTTTCTGAAAACTTCTATCTTGGATCTGGTGG--------CTAGACACTACTGGAAAACACCTTACAACTGCACAGTCATGGGACCATGTAAATTGTAATCACCACAGAATTATAGCTTTGTCTCTTTTTTTTTTCTTTTTTTACACCACTCAGCCTTTTTAGGTCTCTCCCCTTTGTTTTACCTGAGGCTAAGCTCCTCTAGTCCCAGCTCTGAACCTGTGCCCACTGTGTCAGGATTTAGTGTCTTCTCACATCTCTTCTTCCAGGTCATAAAAAGTGTGATGAAAGATGCCTCTGGACAGTACTTCCAAACCTTTGGTACCCAGCTCTTCTTTTGCACTCTGAGGGATTAATCTCAGCTACTCCCAACTCCTCTAGGACCTCACTCATCTTTTTTTTCTGGTCCTAATT----AATTGCACTTTTTTGGGGGGGAGGGCtttttaagacagggtttctctgtgtagccctggctgtcctggaactcactctgtaggccaagctggctttgaactcacagagatctgcttgcctctgggattaaagtgctgggatttaaggcatgtgccaccactgcacagctCAGTGATCACTTTTAACCAGTGAGCCATCTTTTCAGCCCTTCCTATTAAGTTTTTAAATCCACACGTTGTCCTTTGTTCTATCTTT------TTCTTCCTCCCTCCTCCTCTCACCTTCAATGAGCACATGAACACTCTATACTTCCCATGCCCACTCTTCATTTCCCAATGTTTCTTCAGTCCACTGCCATCTGCCTTTCT---TAGACTATACCACATCTGCTCCATGGAAGGCCTCTAGCGATATAATTGCCAAGTCCAGTGGATATACACTATCTTGTACTGCTCTCTAGCTCTGGGTAGGCTTTCACCCTGTAACCCTGTTTCTGTGC----------------------CTTTGGTGACGCCAGTAAGGTTCCCTCCTATTCCCCTATCATTTCTCTTCTTACCTCTATGCCAGAACGCCTTTCCCCACTTGCTCCTTAGCTGCTGTTTATTCACCTGTAGTAAGCTAGGAGGCTCACCTTTAGAACACAGAGCATGCC-------------ACCATCACCCCAGTGCTTAGACA----------GCTCTCCACACACAGAGGCCTTCCTTTCAGAACTG-CTGAATGTTGGAAACAGTGTGGCCATGGGGGCAGCATCTCACCCTTCCTCCAGAG---------------AGGCAGACAA-TTACGTGACTAGAAGGTGACAACAAAGTATAGCAAGAATGATGATGCCAGGAGCCATGGGAGAA--TGAGCTGGATGGAGAC-GTGCCTAAGTTTGTCAACACTGAGTTGTCCTGCTGGTTTCAGCTTCAAATGGAAGTTGAGTATCAGTATGGAACTGTAATCTTATCCTACCCATCCCCAAA--TGTTAAGCACTTTGTATTGTCCCAC--------------CACTATGCCCAGTTACCAAACTGAACAGTACCAGGAG-AACCCTCCATTCCTCCTTCCCTCTCACA---CACATCCAAACAACAGCCAAGtgtcctagtttggtttcct-------cactgtgata------------aacatcatgaccaacagcaactttg-----aggaaagta-------gtaattttagcttacaggccagtattaaggtaagtcagagcaggaactcaaggcagaaactgaagaagaaccagtggaagaatttttcttactggcttgctcagtttacttacaccccgtgggtggtggaacatcgccttcctggtgatggcacc-agccatggtaggctaggaacttccacatcaatcatcaatcaagaaaataccctgcaggcttgcctacgggc----cagtttgataggtgcattttctcacctgaagtttt---ctttttttcagatgactccattatgtgtcaagttgaAAACAATGCAAAACCAAACAAAACC---TAGCCAGCATACC-----AAGCACAGCTGAACTGCCTTGTCAGTGTTTGTCAGTTCCCTGTTCCCACCACCACGGCCATCTCACTTTGGTTATTACAATGTTTTTAGCCTCTAGTCTCTCTTCTCTAGTACATTTTCTCTACTTACAAGAGTTTTAAAAAGATCATCTCGCTAGCCAGCTTAAAAGCCTTCTTTGGTTAAAATCAGGACCACCGGCACCCACTGATACCACACAGTATGTCCCACTCCTCTCCATCATTGCACTTTAGTCATTAAAACGTCCCCTGGATGTGgctaggcagtggtggcacatgtcttttatcccagcactcaggaagcagagg-cagtcagatctccaagttcaaggcc----agccttgtcta--------cagagtgagttccaagac------------------agccaagactacacagagaa---------accctgtctcagcaaaaacaaaaCAAACAAATGAAAAGCAAAACTCAGACGTCCACTAAATGCAGTGATCAAATCTTTAAACATTCTACACGAGG-AACTCTTAATTCTTCTGCCACTATTTG--------TATAGATGAGAGCAGGCAAGTCAGCCAGTG------TAGCTAATATATCACAAGCACAGAGAACTGAACCCTACTCTAAGGACCATAGTCTGTAGCT-CTAAAATGTTCCTGTGAGACCTGACCTCACCTTACTTCACCATGGTATCCATCAACTGGCAACTTCTTACCCATTTTTGAATGTC-------TATGACACTCCCCTTATCCTCC-CAGAGTAGATTACTCACTTCCTTTCCGGCAATGCCGCTGTAGCT-GGTCATAATCCTGTCAGTACATTTAT-CACACTCCTGAATGCATACTTAAGGATTCATTCAGTCCACAAAGAGGAGAACAGGTTGCATATATATGAGAATTACCCTGGACTCTGGAAATTCCCACATTTATTTCCTGATTTGTCCTATCATTCACCATTATCTCATTCTTGTTTCTTGTTGCCAACTTAGCTacacacacacacacacacacacacacacacacacacacacCTTAGCCCTTTTGATTGACTCATTATTTGCCAACCTTG
s HiC_scaffold_1 139220969 2916 - 233722169 AAATATCAAACTCACTCAAAGATCAGACTATACCAGTGACTTCTTATAGCCCCCAGCTCTTTCTATTGGTCTTCCCCATTTCTTCTTTGATGTGACGGAGACTTCCTTCTTCCtcaccttctt--------ccttccttctgtgaTCTGCACTGTGTGCCCACCACAAGAATTCCTTT----TCTATCCCCTGAACACCTTCACCTCCTTGTCCTTTGGTCAGGCCCTTCTGTACCATAGCCCAAAACCATTCCTCAACCCTCTCCTTTGGGTCCAATAGGTAAGCAACTAAGTATaactaaaaaaagacaaacagtCACACAGTCATGCAACCATA-AGACTGTAATTACCACA-AACAATAGCTTCCTATCC---------AAGCTTTTATGCCACTCAGCCATTGTGAAT-GAGCACCTTTGTTCTAAGAGACACAGAAC-CCTCCAGTCCCTGCTCAGTGCCTGTGCTCCCA----CAGGGCCTCACCTTCCACTCCATGGCCTCAGCCAGGCTCTGA----------GTAAGGCACCTCAG--CAGTCCTCCAAATCCACAGGCGC--------------GCGCtct------------ccagc--ctccagcctcctGCTG-------CTCTTCTTCTGCCTCTGCTCCAGCCCCCACAGGTGCACC------------AGGATTTTGCTCCATTGTTTATATCTGTTCAGTCCT-------------------------------CTACATTTGACTTCTCA---------TTCATTCTGACA--------------------------ACTCCTTCTCCACAGCTT-GTAAGTGTACTTGAACA----------TTTT------------TTGTGTTTGTAAATTCTCCCTTGGGCCTATGTC--ACCTTCAGCAAGCACTCCATCTCTCCTCCTTTTGTTTCAAATGAGTAa----------tctacccccccccccaactctgCATCTCCAACTCTTTCTTTAATCCACTGCCATCTATCTTTCTCCCTATCCTCTGCTACCAGTGCCCTGGCCAATGTCCCCAAGGATATAGCTGGCCAATCCAGTGGACCTGTATCAGCCTTTCCCAC-AGCTGTTTCTCTATAGACTGTTACTTTGTCACTCTCTCCCTCCACTTTAGAAATCTCTCTTCATAGACTCTGGTGACACCAAAGAACACTCCTTTTGCTTCCtgattatttctcttcttttttctgtgcaATATCATTTTCCTCCTCTTGCTCTTTAAATGTTGTTTGTAAACCTTGGTTGAGCTAGGTTGTGTACCACTAGAACACAGACTGTGCCTGGCTTTTTAACCACTACCATCCCAGTGCTTAGACACTCTGCACACTCCCTCCACATACAACTGC------TGCATGACTGGCTGAATACTAGGAACACTGCAATGATCAAAGCATCATCTC---CATCCTCAAGAAGCTTGAAgtttaataagaaaaacaaatcagataaGGAGAAAATGGTAGTAAAGCATGGTAAGAATGATGATAC-AGGAGCTACAGGAGAACATGAGACAAATACAGGCCATGCCTAATTCCTTCTGCACCAGATTGTCCCACTTCCCTCAGACTCA---------TTATGACCCATATTAAACCACAACATTGCTGTAAGCATCCCCAAAAATGTTACTCAGTTTGCATTCTCCATCTTGGGATAGTACTGCAACCTGCCTGGTCAGCAAGGTAAA--GTCCTAGAAGTCACTCTTGATGCCTTCTTTTCTCTAACCTCTCATATTCAAACAGTGACCTTG----CTAGGTTGTTTTACCATCTGAACACTGGGAAAGTTTCTCTCCCCATCATCATGACCAACA-TACCTTTGTTACAACAACAGTATCCTACGATGTTCTTTACCTCTAGCCTCTCTCTACTGTAGTACATTTTTTGCACTT----CCAAAAGTGAAGAGGATCATGT--------------------------CACACTCCTTAAAAACCTTCATTGGC------------TCTTGGTAATGGTAAAGAGCCAATGT------------TACAACCCAAATATC---CAGGCAGAGCCCCTAATGATGCAACCCTGGGCTTTCCAGTTTCATG---------TCTCAC----AGCTTCTACCCCCATTGACCATCATCCCATCCTCTG--GAGtctgaaagaatcttgccctaggccagacactgtagccagtaaagctttggaggcagaaccaagaggctctatc------------------------------------------ttgaagTTATC------TTCctcgcccctaggaatttacctgtggcac-----------------gaaatgaacaccaatgggctacctgtgcatcactaatgccc-cttagg-------------caccaccccaaacctaagctacat-gtatgtccc----cactccatgtgtccgacagagagaatgccagcccccagagacaatgccagaccccagagggttagggggtctctccccacattcttaaaataaaggtcatttgtatttcatacttcttatctttttagccgcgCCAAAATTCTATCAGAGT-----CCAGTACCCTTGAACTACCTGCATGAGCTGAGAGCATACACTGCATTTCATCCCCTCTTGCTTTTGCA---------CAAACCAATGT---GTAAAACT------TCCTTTGAACCCATTACCTTAAATCCTAAATATTCTGCATGAGTTAAGATGTAATCC--ATGCAACTATTTTCTCCatcttacaggttaaaaaaaa-aagtgtttaaatgATGGACTGGCTAATACATTGTG-GCACTGGGATTTGAATCCCAGTCTA-------------GCAGCTGCTAA-----TGCTGTCATA-------TTGCCTGACTTCAGGACTGTGACCCTCCACGAGTGACCTCTGATCCATCCTTCAGTGCCCAACTCATAAACCACTTTCTCTACTCACCTCAGAATAAGCCTATCATTACCTCCCAAACACCGTCAGTGTGCCCAGGTCACAGCCCTGTCATTACACTTGTACACTGTGTTGTACCCACCTGAAAATATTAGCCAAACCTACC-----GTGATCAAGTTGCATATA----AGAATTCCCCTGGACTGCAGAAATCCCCACATTTACTTCTTGAACATCTCTTTCCTTCTTCGGTACCTCATTTTTGTTTCCAGCTATCAATTT----------ACAAGCTCTCACTCGGCCTCAGCTCCTTGCCTGTATTAATCCTTCAGTTTGACTCATTGCTTATCTACTTTG

a score=14134
s chr3            93521980 1153 + 160039680 ATCTGAGCCCTCTG--TTCTA-AGGGAAAGAAGAAAGGAGCATCTATAGGC--------------------------------CTGGAACCTCCTCCCCAGTCTAGCGAGTCCTCCGTGCCAACTCTCCTGCTATCATGTGACACACTAATAAGGCAGCTAGATTTTAGTTCTGATAGGAAGAGCATGTTGTGTAAACAC--TTGTTTCTAGGCTGTGGTGTTTGGTGTTTCCCCCCCCCCCCCCCCCTAACTTACCAATAGTTTTCTCTCCTTCAGACTCTTTAGAAAGAACTTATCTCCAGAAGAAGGTTCAGGTACTCTGGGCATTCCTAGGTGCAGTGAGCCACAGCAGTGCAATTTTGATAATAAGCTGCTTAAGATAGGTGTTAGGAACGgggcatggtggcgcacgcctttaa----tcccagcactcaggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaacaaaaacaaaaacaaaaacaaaaacaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaaaagaaaGATAGGTGTTAGGAAGAGAGGCTGCGGGGCTGC-CAGCTTTTGTCATCTTTAGCATGTGCTGTTGCACAGCCTGAAAGCTTCCAACTTTCGTATCCAGAAAGTCCGTCTTAGAGAGCAGTCAAAAACTAAATACTAAATtacatacat--acatacatacaAATCATAGTTAACATCAAGCGAGAAAGTGTCAGGGTGTGGTTGACAGGGTCTAGGAAACCCTGCAGTTGC-GCTGCTACCCACTAGGGGGAGCACAACGGATCAATTCTGGATTCTGGGAACAGATCTCAACCA-----GGATGACTCAACTCAGT-AGAATTTCCTTTAGGAATTCTGCTGTGGGAAAAGCAGAGTCCGGCACAGAACTTGAATGATGCTCTTCCTGGTGCAACCACAGCTTTGGTTTAACTCTGTGTTAAGACATTCCAGCCACCATTCCTTTGGAAATGAGTGGCGTTTGGATG-----AAACAAAGGCAGAACTCTGTAGAAAGGAACCTTGTAGCCGAGAGCCTAGGGGTGACGCTACCCTGATAGTTGCCCTCTCATGCCTTAGT-TCTGCACAAGTAAAATTAGTGACGTCTAGCTTTCTGCTTTACA
s HiC_scaffold_1 139235091  966 - 233722169 atcagagtaCTCTGATTTCTGCAAGGTAAGGTGACAGAAGCAGCTGTAGGGATAGAAAATGGCCACAGATCTAGTCCTCTTAGCTGGAACCTGTCCCCCTCTCTGGTGAGCTCTCCCTGCGACCTTCCCCTCAGCCTCA------GCTAGTAGGACTG--AGATTTTGGTCCTGATAAGGAGAGCCTGTTGTGCAAACATGTCTGTTCCTAGGCTGTGGTATTTTGGTTTTCCTCCAAGCCCTCC-----ACCTACCAACATTTTT---------------GTTAATAAGTTCCT-TTTGTGGGAGA---------------GGGAACTCCC---------------CAACATTG------TGGTAAC--------TGAGAAAGGCTCTACCTCCAGA------TAGTTCAGGGCTTGAAATGCTCCAAGATCCCAGG-GGCAGCCACAACCTGCATCCTG--------GCAAGCCC--------------------------CTGGGGTTA---------------------------------------------------------------------------------AGATGGGGAAAGGCCAACTGTAGGAAGGAAGGC--CAGAGCTGTACAGGTCAGCACATGTTAAGTAAGGG-----GCACA-----AAAGCCCACAGCTCT-ATGTTTGGGAAGTCTACCCTAAAGGCAAATTATAGGCTAAATGCTGAGTTGCAAACATTGAAATCCAAACAAATCCTTGTTAATGCCTAGAGATAA-------GGGTGTGGTCTGCACGGTCCCAGAAagcctgcagctgctgctctTATCCACCAGGGGGAGCCCATCAGCTCA-CTCTGGGCCC------CAGGTCCCTGCTGTCCGGAGTTTACTTAGCCCAGTGAGAGCCTCCATGTAGCTTTCCACTATGAGGAAAGCAGAGTATCCCAAAGGATTTGAA-------CCTCCTGGTATCACCACGGCTATAGTTCAGTTCTGAAATGAGACGTTCCATTTGCCATTCCTATGGGAATTAGTGGCACCTCGAAGTGGAAGGACAAAAGCCAAGGCCTGCAGAGAGGA----------TGATGTCCTAAGGATGGTGTTACCACAttggtttccttctctttcctcagtAGCTTCAC-AGTAAAATCAATGGTTCCTGG----CTGCTTTTCA

a score=11201
s chr3            93524012 250 + 160039680 TATTTTTAACCTGAGCCCTCCATTTTTGTTTTCCCCAGAAGCAAAAATG------CCTACAGAGACTGAGAGATGCATTGAGTCCCTGATTGCTGTTTTCCAAAAGTACAGCGGGAAGGATGGAAACAACACTCAACTCTCCAAAACTGAATTCCTTTCCTTCATGAACACAGAGCTGGCTGCCTTCACAAAGGTATCTGTCCCAGCCCCCATACC-CTGACTGCTTACTGCACTGAACAGGAGCCCAGCAGAATGG
s HiC_scaffold_1 139236187 251 - 233722169 TAGTTCCTATctgatttctacattttt-ttttctcca-aagcaaaaatgTCCAGCCCTACAGAGACTGAGCGGTGCATTGAGTCCCTGATTGCTGTGTTCCAGAAGTATGCTGGAAAGGATGGGAATAACAGCAAACTCTCCAAGACAGAGTTCCTAACATTCATGAACAAAGAACTGGGTGCTTTTACAAAGGTA--TGGCTCTAGCCCCACACTGCAAACCGCCCACAACATGAAACA-AAACCCAG-GGAATGG

a score=20377
s chr3            93525678 722 + 160039680 tgtgtTGGAG------ATGGGTGGAAGATGAAGCTTCTTAGGCAGGACCTGTAAC---TTTCTACCTCAAGCCACTC-ACTGCCTCGTGGTTTATATATGGGAGTTGCATCCAACACTT----------------------TCCAAAGTTGAATAACCCTTAACGTCACAgaaagaacataggacaaggagtaaagaagtctggatttgtgtccaggtctgctgctAAAGCAGGTCGCTCTCAATAACCCCTTCCCGGACTTTCTACTCCACTGAGAATAAAATGTGGCAGCATATTAAGAGGCACCGAAGAAAGTGAAATATAAAGATGTCATTGTTTTTGCAGAACCAGAAGGATCCTGGTGTCCTTGACCGCATGATGAAGAAGCTGGACCTCAACTGTGACGGGCAGCTAGATTTCCAAGAGTTTCTCAACCTCATTGGTGGCTTAGCTATAGCGTGCCATGATTCTTTCATCCAAACTTCCCAGAAGCGAATCT--AATCCTCTTAGTTC---------CCATCCAACCACCAAGTCATCACCTCCCCCGACCCCATCCACACCTGCACTGAGCCCAGCACACCTACCACAACATGTATCCCACGCCTGCTGGCAAAAATAAAACAATGCCATTTTTT---------------------TTTAAATGTACACT-GAGAGTCAGTAGATTTGTGTAAGGGAGTGTGACATGGAAGCTGGTAGCAGGAGCTGCCTAATAGACAGTGAAGATGCTTCTT---GTGTATGCATGAAATCATGACCAATG
s HiC_scaffold_1 139236863 706 - 233722169 TGTGTTGGAGGTTCAGATGAGTGGAGGGTGCAGCTAATCAGGCAGGGCCTGCGCCCTCTTTATAACTGAAATCACTCCACTTGTACCTGATTTACCTATTGGAATCACATATGACACCTGAAAGAAGCATTCCACTGAGCTTTTGAACTTGAATAATACCTAGTGTTGCAGAAAGACCA--------GGAGCAAACAA--------------------------------------------------CCTTTCTGTGCCTTTCT------CTGAGAATAAA-TGTGGCAGCATATTTCAAAGCACCTTAGAA-GTGCGATATAAAGGTCTTATTTTCTTTGCAGAACCAGAAGGACCCCGGTGTCCTTGACCGCATGATGAAGAAACTGGACCTCGACAGTGATGGACAGCTAGATTTCCAAGAATTCCTTAACCTTATTGGTGGCTTGGCCACAGCTTGCCATGACTCCTTCCTGTTGG---CCCAGAAGCGTCACTGAAGCCCCCTGAGGCTGGCCTCACACCTTCCCCCTGCCAGGCACTCAAGTATCCTCTCCCAGTCCACACAGACGCTGAGCGCAGCCCACTCACCACCCCATGTAGCCCATTTCTACTGGAAGTAATaaaa-----ccagattttaaaaataaaaaccaaaaaaaacaaaaacatacactaaagaattagaaaatttgTGCAAAGGAGGGTGGCGTGTGGGA-GGAAGCATGA-------AGGACACAGCAAAGAGACCTCTTAACGTGAACACAT--AATTGGGACTAacg

a score=3942
s chr3            93525970 152 + 160039680 AAGATGTCATTGTTTTTG-----CAGAACCAGAAGGATCCTGGTGTCCTTGACCGCATGATGAAGAAGCTGGACCTCAACTGTGACGGGCAGCTAGATTTCCAAGAGTTTCTCAACCTCATTGGTGGCTTAGCTATAGCGTGCCATGATTCTTTCAT
s HiC_scaffold_1 139288889 157 - 233722169 AATACTTCTTTGTTCTTCACCACCAGAATCAGAAAGACCCTCTGGCTGTGGACAAAATCATGAAGGACCTGGACCAGTGCCGAGACGGCAAAGTGGGCTTTCAGAGCTTCTTTTCACTAATTGCAGGCCTCACCATTGCGTGCAATGATTATTTCGT

a score=6757
s chr3            93546979 387 + 160039680 AAAAGTCCATCGATAAAACTGGTTGAATTCTATGGCAAAACTGAGTTTT----------GACAT-----------ATCTAGAACCAATCTGTGTTCGCCTTT-------------------------TTAGAAAGGCACGTGGAGGATACACCA----TTCCTTTCCGCCACTGCTC------TGAGAAATTTTACCTAAAACATG----------GCAGGGTGCAGACCCACATC---------ATCTGTACCAGCCTGTGTTTAGCCAGGTCTTTGGAATA------CAAACACTTCTCTGCTTGAGCCACTCAAGATTACTCAAACTCGACTGACGAGCTATTCACTCCGTGGCCACCAGAGGGCCCCACAGCATTAACTAGAAGGGAAGGTCATAAGCTTTCCCAATA------TGAGCCTGTGATCGGTCCACAACACCCAGTTTCCAGCCAATAGGAGGGACTGGGAA
s HiC_scaffold_1 139261508 466 - 233722169 AGAAGCCATCCAATAAAGCCAGTTGAATCCTATGCTCAAactgaggtttcagttcatcAGACACCAAATAGTTTAACCTAGTATC--TCTATcttcacctttctttcttttttctttttttttttttttctcttttcactttg----taCACCAAGTATTCCTCTTC-CCAGTGCTCAGGCCCTGGGAAATACTAGTGAAAAAATGAGCACATGGGGCAGGGTGCCAACCTAAATCCCAATCTCCATCTCCATCAGCATTCAGTCACCTGGTTTCCAGACATAGTTTCCTATTCCTTGCCCTATCTGGGCTACTCAGTTGAAAGCAAACCCCACTGCAGATCTACTCACTATGTGGCCACCAGAGGGTCCCACAGCATTAGCTAGAA-ATCAGGACACAGCCTTTCCTGGTGCATCTCTGATCTTAAATTTTTGTCAGAGCATTCAACCTCCAGTCAGTAGGATTGCCTGGGGA

a score=46978
s chr3            93555587 2130 + 160039680 GGAGGACTGGA-GGCTTGGCAGCTGGAGGATTCCCTTTCTGAAGGACCCTGCTCTGCTTGTTGCCTTAGCCTCAGTGCAAATT------CCAGGTTGCTTCGGAAGG----ATCTTTAAAGTAGGACTTTCTGTCTCTCTACCAAGTGTT------------------------------------------------------CCTCTAGCTACTCGGATTAAATAAAGGGAACCAGAGAGAGATGGAACGAGAGAGCAGGCTTGGTGAAGAATCTTC-AGTCTGGGATTAATTTTCATGTGGTGCAGTGAGAGGGACGTA-------------CCTGCTTCACGGCCTGAGCTTGGCAACAGGAATGAC--------------TGACCTCTTTCCTA---------------GCCCTGCCTGG-------GAGGACTCTGGAGAAATTGCTGAGTGGG-TGGCAAGCAAAACAGAAATGTGACAGACCAGCAGAGCCCG------GATCCACATTCTGAAATCCACAGGACCCACCTCCCTCATTTTCCTACCCCCACCCCCCACCCCAGGAAAGCCAGACACATTCTGCAGGGTGGGGCTAGCACAAAGGGTTCCTGGATTCTCCTAGTGATCTGTGGCCTGTGACTCAGCT--GTGAGACC--TTGGGTGTGGCCTAGCTGGTTGCTGATTCTCTGTGGATGGTTTGAACAGATCGCTCCCTGAAGGAAAAGAGGAACTGTGCCATCTTCCAGGGCATTTTCCAAGAGGAAATGAGTCACA-ACTAACTGGCCACCAACCTGCAGGAGGGGTTTCTTGTCTGAGCTGCCTGG-AAGGGCAGTAATTAGACTGGCAGAACCATTCCAA-------------------GTCTGTCTCTCTCCCCCCCGCCCCC--------------------------------------CCCATT---------------------------------CCCCAAGCTTCAGTTTCAGCTTCCAGGAGTGGATTTTTGCAT-GTTATACTTCAAATTAGG---------TAGAAACTCTCTGTCAGAGAGCTT-GCCTTCGGTGTGTTTCAGCAAATTGCAAACGATAATGCCCGACGTTGGAGCAGGAAGGAGGAGTTCATATAACTC-CCTGAAATTTCATTTACCTTAGTCCTCCTCCCATTGCCTATG-----------------CACT----------------GTCACTGACAGTCTAAGAGTAGTGtt--------------gtttgtttgtttgtttgt-----------ttgtttgtttgtttTTGGTCTGCTTGGCATAGAGCAGTTATTTGGGTTCCCCTAATTTCTGAGTGATGCTGTTCCCTGGCTTTTCCTAAATACAACATCAAATGGGCCGTTGTCCTCTTATGCCTGGCCTCTGGCCAGCCTCTGAGCAGTCACCCCAATGTGGTCAGGCCCTGGGCTGGGTGGGGCTGAGGCTGGATACCTCCCTGCTTTCTACTGACAGgagagagagagagagagagagagagagagagagagagagagagTGTGTCATGGAGTCATGTCTCCCCACCTCCCAGCAAATACATAAGTATTTGATATGCCTTGGA----CACATTCCATTCATTTAAGCC----TAGCTAAGAGAACAATAGGATTCTTTCAGAATTATG--AAATAAATTAATGCTCACAGTGCTGGGGAAAGATGGGCTCTCAGGATTCACAACTTAGGAATCACACCTCAAAAGCAAAGGGAGTAACAGGCTTGGCAGTGTG--AGGGTCTAGCTCTTCAGGACCACCACCCCTGGAGGGAGGCAGGGAGGGACTGATTGACTTTTAAAGACAACTTTCAACCCTTCA---------ACTAAATAATTCTCACTTGTCCATG--------TAGCTGATGTTGT-----TGGTTGGGTTGCTGACTCATGACAACCCCTCATGGAAAAATGGATGCTCTTGGTTGAGCTAGAGTTCT-----TTCTTCCTATTGAATTGCATCTGGAGCTTCCTTTAGCAGACCATGTCTGTAGTATGCAAGTTTTAGTTGGTGAGAAAG----TCTGAGCTAAAATCCATTGTTTTCATTTCATTCCTACCCCAAATATACTGTAAGGGTCAGATTCAAAAATGTCCTCTGGATTCAATTAAAAAAAAAAAAAAAGGATTGGTCTT-CAAATTCTCCTAAACAAAAGAACAGAAACTCTACAAACGTTTTAAAATAATGGATGTTTGTGTTCACTGACACC---CTAATTAA-TTCTGGGTGGCTTCAAGAAAATTAAGATATGGAAAAAATACAGATGAACAAAGTAAATCAGGCCTCCAG--------------CTTCTGAGATTTGTAGCCTAGACCTGGGCATAGGTCCAGAACAGACATTTGGGATTGCTTAGG---------------AAGAGGGATTCCCACCCTACGCCCCT
s HiC_scaffold_1 139279820 2295 - 233722169 GGAGGACTGGGTGGCTTGGCAGCTGGAGGATTCCGGTCTTACAGGATACTTCTCAGCCCTGCGCCTTA----CTAAACACGTTTGTCGGCCAGGTAGAAGAGAAGGGTCTTATCGTCGAGTTAGGGAGGTCTGTTTCTTTATGAGACGTTGCTGGGGCCGGGCGGGGGAGAACTACGTGCTGTGGTTTCTCTACTGAAAGCTCTCTTCTTGCTATCTGAAGTAAGTAAA----ACCAGAAAGAGATGA---GGAAGACCAGATGTGCC-ATGAATCTTCCAGTCCCAGAA-AGTTTTGGTCCCTTGCAGAGGAGTAGACGTATAGGCCGTGTGTACCTGGTTCACAGCTTGACCTTGGCCAACAGAATGGCGTTCCCTCCAGCCCTGATTCCTGCCCTCTCCAGTCTCCAACATGCTCTACCTAACTACTCCAAGAACTCTG----CCTTGCTGGGTAGGATGGGGAGAAAAACAGAGCAGCTATAGGCCAGCAGAGCAAGAGAGCTGAGCCAGATTCTGGAATGCATTAAACCCACTCCCGTTGGTCCCCCACCCTTTTCCCTC--CCAGGGAGAGC-----------TGCGGGGTGGGGTTAGCACGAAGGGCTCCAGGATTCTCCGGTTGATCTGAGGCCTGTGACTCAGCTTCGTGAGACCATGTGGGTGTGGCCCTGCTGGTTGCAGATACTCTG-----------GACAGTATGctctctgaaggaaaaaaagaactgtgcCATCTTAGAGGGCATTTTCCAAGAGGAAATGAGTCATACGAGGACAGGGTGCCAATGTGAAAGAGCTGTGTCTTGACTGAACTG--TGGCGAGAATAGTAATTAGATTGGCAGGGCCGTGGCAAAACCGCTGCTGGGTTATCGGCCAGGCTATCAGCCCTGTGCTGCCTGGCAGCCAGCCTCAGCTTTACTTGAGAAATAGCTTTTCCCATTAAGAGGTCTGCAGTTGATGCAGAGTTTTTTCCCCCTGAAGCTTGGGTTTCAGCCTCCAGGAGtggatttttatgtctttgtaCTTCAGGTGAGACCAGGTCCATGGAACCATCCTGTTGATGATCTTTGCCTCCAGTGTGTTTCAGCAAACTGCAAAAGATAACTCCAGGAGTTGGGGCAGGAATAAG---TTCTTGTAACTCGTTTGAAATTTC------CTCAGCCGTCCACAGATT-CCTATATGGTTCTATTTAATCATCACTTCTAAATGGTATTTTGGTTTTTGACAGCCTGAAGGTGGTTTTTCACAGGGGTCCTAGATCCAGCATTTGGAGGTCCTCATTGAAGTTCTTCAAGTTTTCTAGATCTGTTGGGCACAGAGCTATTGTTTGGACTCAACTG---------------------CTGGCTTTTCCTGAATTCA---TCAGATGAGCCCTTGGCCTCCTGTTTTTGGCCCCTGGCCAGCCTCTG--CAGCCACCC-AGTGTAAACGGGCCTGGGACTGGGTGGGGCTGAGGTTGAGTGCCTT--TTCTTTCTACTAACTGCTCAAAAAA----------------------------------TGTG--------------------ACTTTTTGAACACTACACA----CTTAATATGCCCTTGAACAACACAATTCTGTCTTCTAAAGCATAATGGTAAGGGAAACAATTAAGTTCTTTCAGGATTATACTGTGTAAACTAGTGTTCAGAGTACTGAG-AAAGCTGGACT----------AAAACTTTAGGATCTTTCGTGA-------------------GCTTCTCATTTTTCCAGGACTTAACAATTTAAGAACTTCACATC------AAAGCAAAAAGA-ATTTACTTACTTTTAA---CAACTTTCAGTTCTTCCTATTGTTCCACTAAACAACTCCCACTTACCCATGAAAGGATCTAATAGAAATTGTCCTGATAGTTA--TCAGTGACTC-TGA-----------GGAATTATGGATGTGTTTGTTTGAGTTTAATGTTTCAGAGTTCTTCCTATTGAATTGCATCTGGAATTTTCATTTGCTGACCATTTCTTTAGTAGGCAAGTTTTATTTGGTGAGAAAGGCATCCTGGATAGAGATCTATTGTCGCCA-CTCATTTTT---CTTAATTCCCTTTAGGGATCAAATTCAAAAATGTCTTCTGGGTTTAATTTCaatcaaagaaatttttttcattttccaaatgccccaaaacaggaggaaaataacttcagatatatttt-atataactaatgtttgtttttattgacaCATTGCCAGTCAGTTTCTGGGTGGCTTTAAGAAAACTAGGTTACGGACATGATACAGATGAGCAAAGTAACTCGGGCCTTCCACCCTTAGAAGAGTCCTCTTGAAAATTATGGCCTCTG-CTGGGCAGAGGTCCAGAGCAAACATTTGGACTTGTTCAGAAGCAGACACTTCTGTAAGGGAGATGCCTTCCTTGCTCTCCT

a score=32777
s chr3            93557940 5074 + 160039680 [encoded data, 6214 characters]
s HiC_scaffold_1 139282825 5453 - 233722169 [encoded data, 6214 characters]

a score=37081
s chr3            93563664 1370 + 160039680 GTGGATATGTGAAGACAAACTAAACTGTGATGGACTCA-GGTGACATAGCTGATATGACATACAATAGCACCCTTGGTTGTCTCAGCTGCACGAAGGAGAAAAAGAAGACTTCTCCGAGTCTTCTCTAAAAGCAAA-ACCCAGTGTCCTCATTAGCACCAGCTTAGGACTAATACCGCAGGGAGTGCACCTGAAACGTATCTCTGAGTAATCTGAAGCTCTCTCTTCATCAAGAGAGATCCCTTTTAAGGATCTGACCATGGTGTCAGGAATGAAAATTTGCTTTAAAAAAAAAATCTAAGTTTGAAGTAGAAAATGGTGAG-----GATAGTTCTTAGGCACAATCTAAATATGAAGTTACTGAAAAGGCACTCTAAAGAAAAAATTAAAAAAACATGCTGATGACTTAACAAAGGTCACTTAGGACCTAAGACTAGAACAGGAGGACTTGAGAGATTATCCTTA------TGCACGTGGCTGTCAGAAGTTTGAATCAGAGAAGATAATAGTCGCCTATGTTTTAACA-TCATTAACTGACATTGTTTGCCTTTGTTCtaattatttactttttttttttttttttttaGAATCAAAAGGACCCTCTGGCTGTGGACAAAATAATGAAGGACCTGGACCAGTGCCGAGATGGCAAAGTGGGCTTCCAGAGCTTTCTATCACTAGTGGCAGGGCTCACCATTGCATGCAATGACTATTTTGTAGTAAACATGAAGCAGAAGGGGAAGAAGTAGGCCAACTGGAGCACTGGTACCCCCACCCTGGTGCGTGTTCACCCACGGGGTCACTTGAGGAATCTGCCCCACTGCT----------------TCTTGTGAGCAGATCAGGACCCTTAGGAAATGTGCAAATGAGATCCAACTCCAATTCAACAATCTGAGAGAGAAAACTTAATCCAATGGCAGAGAAGCTTCTGAGTTTTATATTGTTTGCATCCCATTGCCCTCAATAAAGAAAGTCCTTTTTTTAAGTTCTGAATTTGACGTAGAGTGTTTCTTGCTCCTTCTGAAATGCTTGCTCCCTGCTTCTTTGAGTCAGGAAGAGTCAGCATGACCTTGGGCAATCAGCATACCACAGGACTGTCTCTCCATAGGACCAGTGAAATGGGAAAGCATTCTCCTCTCAGGCTTGGA-TCTGACTTTTCTA-----TTTGTTTTTCAAACTATGTCTAAGTGAAGAACCAAACCTCAAAGCGTTC---CAAGAGGGCTCTTCAAGAATGTAATCTAATTCTGTAACTCCTCAGCATAGTCTTACCCAGTTAAATGAGTGCCATGGTAGCTAGCACCTTGGATACCCATGATGTATGAATCCATTTTCTCACTGCAAAAACTACAACAAAATCTAGAGTCAAAATAAGCCTATCAGAAAAC
s HiC_scaffold_1 139288423 1257 - 233722169 GTTGATATAGCAGAGCACACGAAACTGCAACTTACACAAGGTCATATGGCCACTATGTCAGG--ACATCACATTAGCTTGGCCTCCCTATA--AAGGAGAAAAGCGAGCCTTCTGTCCAttatctcaaatttaaaatacCCCATGGTATCCTTAGAACCTCCTTAAAATAGATAG------------AAATGAAATTTACTCCCAAATAATCTCATGAGATCTTTTCCT-AAGTAGTTTCCTTTTAAAGGATTTGACCATGTTATCAAGAATAAGCAG--------------------aagtttgaattacaaaatggTGAGTATAGGGTAGTCCTTAGGCAGATTCTAAATATGAAGTTACT---AAGATAccctaaataaaaac----aaaaatatttaggtGACCTA-CAAAGGTCACTTAAGACCTAAG---------GGGAGATTTCAGA-----TCATTAGGAGATCGTACACTGTTGTCAGTA---CAAATCAGATACACT------------TGTTGTAGCAACCATTGACTAA--------------------------TACTTCTTTGTTCTTCACCACCAGAATCAGAAAGACCCTCTGGCTGTGGACAAAATCATGAAGGACCTGGACCAGTGCCGAGACGGCAAAGTGGGCTTTCAGAGCTTCTTTTCACTAATTGCAGGCCTCACCATTGCGTGCAATGATTATTTCGTGGTACACATGA---AGAAATGCAAGAAGTAGGCAGACATGAACATT--TACTCCTGTCCTGATGACAGTTCTCCCAAAAGGCCACCTAAGGCATCTGCCCCTCAGTTTACCCTTCTATAAAAATTTCATGAGCAGATCAGGACCCTTACAAAATGTACAAATAGCATTGAGCTCGCACTGGACAAGCAGAGAATGGAAAGCTAATTAAATGCTAACTaagcttttgatttttatatt-tttgcatcCTTTTACCCTCAATAAAG-------TTTTTTTTAGTTCCAAATTTGGGATAGCATATGCGCTGC---------------TGCTTCCTGGT--TTTGGTTCATGAAGAATCTGTTTCCCCTTGAGAAGCCAGCACAGAGCAGAGCAA--CTTCCACAGGACCTGC-AAGCGAGAAAGCGCTCTCCTTTTGAGCTTAGAGTTCCACTTCTCTAACTGCTCTTTCTTTGTAACTGTAT----GTAAAGGACCAAAATTCAAAGCACTTGAGAAGGAAGGCTATAGTGGAATATATTGTAGTT-TATAATTACTGAGCTCAATTTTACCCAGTTAAACCAGCCTCTTTCTAGCCCATGCCCTAGAGGCCTGAGATGTCTGAATGCATTTTTCC-------------TAACAAAGT-GGGACCTACAAAAATCCCATAGGAAAAC

a score=30506
s chr3            93568411 1581 + 160039680 TAAGGGTGAAG---AAAGGAGCCCTAACATCGGCTCTTCACAGAGGGAGTGAAGACTTGGAGAAAGTC-AAAGCAGTGTGTTCTTAGCAGATTTCCCTAGATTCTGGCAATCAGAGAGGATTCTGTTGCCAGAGAATCTGTGCTCAGGATGGGTGTGCCCACGTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtTGAGGTGGGGAGGGCTGCGAAACCGTTCTCACTGAAGCCCCATC------AACATGTTTATGGAGAAGCTAGCACAAGGAAAGCAAGCATGCACAGCATTTATGGTGCGAAATCCTATGTGACTGTTTGTGCCAACCAAAACAGAG----TTCCCACAATCTGACCTGCTGAAACAGCCAGCTAAGCTTTGGGTTTGTAGCCTAATAGCTCCCAGAAGGCAAAGCTGTAACTCTGCCAAGCACCAAGAAGAGGAAACAGCTGGAAAATTCCACTCATTCTGCTACATGACTGAGTTGT-AAATTGGATTCCA-CCCTCTCCACACCCAAAAG-----GAAGAACAGACAACAGTATGGAACAGAAAGTTCATTTCAAACACGTTGCAGGGCCGATCTAGT----CAGCTCATTTTCTCTCTCAGACTTGTTCCCTTGTGTACCCGCCTCTAACACCAGCCAACAATCAGTGACTTGGTCATTTTCTCTCTATCCTG--------GAAGGCTGGGGACAAGGCTATAACCTTCTCTCCCAAACTGAC-------------------TAAGTACTTTATCCAACTCTTAGCCCCAGAGAGAAAGCAC---------TGGATAGAATTTCACTCTCTTGGCA--------------CTACGTGAGTGACAATGGGCAAAGTTCTGTGGC-----AGAGACAGATGGCCACAGCTGCTGATCAAGATTGCAATCTAGGTTGCAAGATAATAGATAAAGC-AATGAAAAGTTTAATAACACTCAACAGAAACTGGCAAAGATGACTTGTGATGAGCACCCTGGGTC----ACTGTTGACAGAAATATAATCTGCACAATC-TTTGAAAACTCAGAAGTTAGCAAAATG----GGATCCTTTCACTCTGTGGTC-CTTTGA-----------TGTGCttttttttttttttttttttttttttgatcc-----------------------------------------------------------------------------agtacttctaatttggggagtttatcttaataaaggaagcaaatacacaaaattcatagacaaaaatatttgatccagcctgacttagaatagGTATAG---------------AAAGATTTGTGGTAAAAAAA----AAAACCACTTTATATAGTTATACATACAACAGTGAAGACCATGACTTTGAAAATACTAAATGAAATGGAGACATGTCTATACCAAGTAAAGCAGGCTGCAAAATTAGTATAGAATAGTATTTC-----------TTTCATTTAA--------------------ACACTGTG---------------------------------CACTTATTCTTG------------------------------------------CATGTGCACTCATGA-----ACAGCAAAGATTATAGGAAGCACTCTACCTCAGTTTT--GCATCCAGGATAGGAG---TTGCTGTGGGAGAGGTCTGTTGTAACCATAAGTATGGTTGCTATTATTTTAATTTTTTTCTCTATATGCTGCTATGCCATCTAATTTTTCTGCAATAATTCTACTTTTATAATCTGGGAAACAAATGCTCCAGGAAACATATTTTGAACA-CTATGTACTT
s HiC_scaffold_1 139291047 1737 - 233722169 TAGGGGTGTAGGGGAAAGAAGTCTCAAC-TCA--TGTTCACAGGG----TGTAGATTTAGGGAAACTCTGAAACTGT-TATTCCCAGCAGATCACCCCAAGTCCTGGCACCCTGAAAGGTGCCCATTGCCAGGGAATC----------ATTTGAGTCACTACCAGGGAtgggtgtgtgtgt----------------------------------------tg----ggagagGAGTGCAACACCTTCCTTACTTCAACCCGGTTGCTCAAAGCCTGTTGTC--AAGAGCTAggacaatgaaaataaaagtg----gTATGTGTGGTCTGAAATCCTACATGGCT--CTGTGCCAACAAGAGCACAAGGTTTTCCCACAATCTGACCCGCTGAAACAGCTGTCTCGGCCTTGAAGCTGCAGCCTAATGGCTCCCAGAGGGCAAAGCTGCAATCATGCCAACAGCCACTAAGAGGAACCATCTGGAAAATTCCACTGATTCTACTACATAGCTGAGCTGTAAAACCTGATCCCGCCCCTCTCCACACCCAGTagtggaaaaagaacagaaagcagT-----TCACAAAGTTCATTTCAAACATGCTGCAGAGTGGACCCTGCAAAACAGCTCATTTTCCCTTCTGACCCTGATTC-------------------------CCAAC--TCTGTGAATTAATACTGTTGTCTCTAACCCATCTCTCATTGAGACTGAAGACAAATCTATAA-CTTCTCTCTCAATTTAACCAATTTGAAAGTGATTGTGTGAATGCCTGCTGTAGGTCTTAACCCCAGAGagacagttaagatagttgtaGACAGAAATTCACTCATTTGGCAAATATTAAGAGCTGCCTTGTGAGCAACACCAGGTAAAGTCCTGTTGTTTCAGAGAAGCAGATGGCCACAGTGTCTGCTCAAG----------AGGCTGAAAGTTACCAGATAAAGCTGATGAAAGGTTAAATAAC--------GGAGTTAACACAG------TGAAAGGCACAACCCGTGTCCTTTCCTGTTGATAAGAATATGATCTGTGCAGTCTTTTGGGAAGGTGAAAGTTGGCGTTATGTACAGGATCCTTTGA---TGTGCTTACTTTGAACcgagttttttggggtttttttggtctttttcctttttatcggtaccggggatcgaactcatgactgcctgcttgcaaggcaggcacttatgccgttgagctaaatccccagcccctgaaccgagtatttttatttctaggaacTTAAACTAATCAAGGACAC----TTACAAAATTCATCTACAAAGATATTTAATGCAGCATGATTCAGAATAGCTACAACCTAAATAAAACCTCAAACCTCAATAATAAAGGTATATTTAAATAGTTTAGTATGGATATAGACAGGATA--------CTTGACAGCAGGAAAACCATAT-AGATGGAGAAACACCTCCA-----TAAAGTAGACTGCAAAATTGGTATACAGtgtgatttcattttgttttgtttcatttaattttgtttttaggtagagtctcactgtgtagtcaggctagtctcaaactccaCTGCTCAGCCACTGATTTTTGGgatacatgtgtgcaccaccatattcAGTTCTTTTTAACATACACATGCACTTGCGATGTTCATAGCAAG---TGGAGGAGGGAAAGTAACTTAGCTGTTAGTTCCCAGGATAGGAGCTCCTGCTATGAGGGATGATCGTTGTCTCCAGAAAGATGTTTATCATTGTGTTAA--CTTTCCCTAACTCATTGCTATGGTatctaa-atttctaaaatgattttgttttt-caattaacaaaacaaaaacttttag----gtattttgaaaatctatatactT

a score=10594
s chr3            93582956 440 + 160039680 CATCTTCCTGACAGTGTGTATGCCATGCCTCCCTCAG-----GGGA--------AACCTTTTCCTAG---------------------TCCCTCTGTCTTCCCTTCC-TGATCAGGCT-----AGCCTTTACTTCTGT---GATAGAA--AACCATTTTCTTCTTCAAGCAATTCCTTTTGCTTGTATGTGCACTGATTACCACAGTTCACACGTTATGCTACAGTTGCCCAGCTATATATCTGTCTTACTTGGGTGTTCTGTGAACAGCTTAAATACAGGGATCATCACTGTGTTCCCATGGCCTCACATGGTATTCAAGATGCACTGGGAACTCAGCAAACATGTGGGGACTGGATTCAGGAGTATGTTTGTGTAGGAAGGAGTCACAAATAAAGCCAAGTGAACCCTGAGTGGTAACATTCTTTTGTTGCTCATGGAAGCCAGAAGA---------TATTTCTGAGCCAAATGTATGCCTCTGGGGCATCT
s HiC_scaffold_1 139303274 463 - 233722169 CAACTTCCTGAC--CACATAGGCCATGCTCCCACCTGCTACCTGGACCACCCCTAACCTTCTCCTGGGGAACATGTTACCGCCCAGATTCCATCTGTCTCTCTTCCCGTAGGCAGACTTTCTAAGTCCAT-CTTCTATCCAGCTGAAATTAACTATTTCCTCCTTTGAGCTACCACTTTTCTTTGTACATACCCTGTGTGACACATTTGTCACATTATACAATCGTTACTTGCTTATACATTTGTCTGACTTA----CTCTACAAACCTCTGAATCTCT----TTATCACTGTTTTC--AGAGCCCACCATGATGTTCACGATGTACTGGGAGCTTAGCAAGTGTGTGGTGAATAAATTAGTGCGTATATGCGT---------ACTCACAGA---------GCAAAACTTGAATGGTGACATTCTTTTGTTACTCAGGGAAGCCAGTAGATGATGATAGTATTTCCAAACCAAAAATATGCCTCCGAGgcactt

a score=11288
s chr3            93592763 504 + 160039680 TAAAAAGAAACAAAAAACCTGTTCCTGTTCTAATGTGCTTTACACAGTGTTTTTGAATTTTGGCCCACCCTCAACACATCCTGAATTCTTCTTAAAAGTACAGATTAATGATAATAAACACCCAATGTAACATAGAGACCAAGACCAAATTTATTCCAAGCAACTATGGA-TTTCATTAGTTACAAAATAAAGGAGAAGTATTTTGTATGCTTTCTACTGGTTCTTCTTACATA--------TCATTTCCCTTCTACTGACTTCTC---GAGACAGAAGTTTTTATAACTTTA-GTTTCTGCCATCTAACTC---------CCCTAATCCCA-AACTATCAATGTTTCTTCTTTCCTTCCAATGCCTAAAGGGACTAATGTGCCTCCCTGAATCTCCTCACAAGAGTTCTCCTTACGTGCGTG---CCCTGTGTGCCAGAACTGCCTCTGGGCTACTCAGAATCTGGCTGCTCCCTCCATGCTGTGCTCTGCTCTGCTGAGACAGGTGAACACGGGTCACCTCTCTCTCC
s HiC_scaffold_1 139314528 491 - 233722169 TAGTAATAAATAAAAGCTCTGGT---ATTCTAATGTGCTTCACTCAGTGTTTTTAAGTTTTGGCCCAATTTCAACACACACTGAATTCTACTTAAA-----GAATTAATGTTAATAAATGCCAAGCACAACATGGAGACTGATACCAATTTTATTCCTAGTAACAGTAGCTTTTCATTAGATGCAAAGTGAAAGCAAAATAGTCCATTGgattcctccttttttttctcttgtaaaaGAAATCCTCTTCCCCTGTCCTTGTTTATCTGAGACATAGAACTTTCTGCCACTTAGCGTGTCTGGCACCTGACTCCATTTCCTGCCCTTGTCCCGCACCTGTCAgttgtttcttttccctgtgaAGGCCC-CAGGGACT----------------TCCCTCCACTCGCCTTCCACCTGCCTGCCTGAACCACTGCCCGTCA------CCGCTGGACACC----AGCTAGGCTGTGCTCATCCTGCAGCAATCTGCCTTGTGGTGGCAACTCAAC----GTCCTCTCTCACTCC

a score=11048
s chr3            93597067 490 + 160039680 CACAAGGAAACAGAATTTATTTTATTAGAACTAATCTTGTCGTTTTTCAACATATGTGCAACTGCAAAGGACTATCTA----CAGA--ACTTCTGTCCAGAGAAAGAGATAGAAGAAAATGTCCACATAGGAAAGGAACAAGC-------------------------------CTGATTTACTGCTG------GAGGTCTCCCACGG---AACTCTCTGTAGGAAGGTTTCA-TTGAAAGCAGTTGCCTTTGCCCCACCCATCTCTGCTTGTGACTCATTAACTGTCCTCTAGGCCAAGTGTTTTTACAAAATAGTCTGCATCTCCATGGAAACAGCCCAACCCCACCCTCCCTCCCACAGTTGACTCAGT---ACTGT-------------------------------GCAAGGGGAA--ATCTGTTTGACTAGTTATAAATTAGAACCATTACTCACAGGAAAGGACCCTTCGTCTCCAGAGGAGAGCTGTCACATAACAGTGCAGGGAGCCA--AGGAACACCAGGGAGGCCCAAAATACAACACAATTGTTTCTAATTA--AGTCACTATT
s HiC_scaffold_1 139321305 554 - 233722169 CAcaggaaaatagaatttaaattataaGAACT----TTGTAGCTTCCTGATTCACATAGAAAAGCAAGATAGTATTTGTTTGCAGCTCCCTCCGCTCgaaagaaggaaactgaagataAAGCCCACCCAACAAATTAACCAGTGTACAACCAAACCTCCAGTTCCAAGTTGCCTCTGATTTGTTGCAGCCGCCAGAGCTCTCTCTCAATTTAACTCTCATTCTAGTGGTTGAAATTGAAACCAGCCACC-------CACCCAGCCCTGACAGTGACTCATTAACTGCTCTCCAGGCCAAGTGTTTT-ACAAAATACCCTGCATCACTATGGCAACAGCCCAGCAC-----TCTTGGGTGTGGTTAACTAAGTTCGaccgttttgtttttttttttttggttgttgttgttggttgggGGAGCCATCCATTTGACTAGTTATAAATTTGAAACATTACTCACAGGAAGAGGCCATTTGGTAC---AAGAGCCTTGTCACATAACAGGG-AAGCAGCAAAGAGGggtaaaaaagaaatccaaagt--aACTCAGTTATTTCTTATTAACAGCTACTATT

a score=23512
s chr3            94315753 1922 + 160039680 tgttgttgttgttgttTTCATAGAGTACTTGAGGCAGGGTCCCTCTGTTCTTCCTATTGAACCAGGATTGGAGTCAGCCCAGGCATCAGCAGAAG-CTGATTCTCCCATCAG--TGAGCGCAGC------ATAGTGTC--AGGGGTGTGGCCCAAGTGACACACACAGCAATCAGGATG--GTGACTAC-------AAGTAGAACTCCGAATG-GTAGATACCTTCTGTGATCATAACTGTTGTGAGGTTTCTGTAG-------------CAGCTTTCCTGTCTGCTGTCTGGGAGCATTTGAGTAT---GCTCCTCCATAGATCACACCCTGTCTTCCCAAT-CCTGCAACCTTCTAGTTGTCG-------ACTGGAATAGTGGCAATGCTCAGTGCTCCAGAGAAGTATCATGGTTGGAAATCGTAGTTACCATGATACCAACCTCTCTTCTCCCAGCTTCCTCTTGTCCCTCTTGTATTCTTTATTGTAATTAATTATCATTTATTTC-TATAGTGTAATTCATACAACAGGGACTGGCTGTAGTATTTACCTTATTCCCTCATTGCTTTATGGAAGTTGTCCCCAAGTTCTGCCTTACGATCTCATAATTCTCACTGAGTTACCCAAGTGCCTCCAAGGAAAACCCTC-ATTTGCAATCTTAGACATTACCACTCTCTTTCCTATTATGGCCAAATCTGATCACATCACTCCCTGCTTAAATAATCTGAGAG-----------TGCTGCAGA---TAGAATTCAAACTAGTT----AGCATAGCATTGAGGCTTTGCCTACACCTCTATATACTTCTGCACCTTCTCCtttttttctattaataaattattttatttatttatatcccaaatgttgccccctctcct-----------ggtcccccctcaca-------------gagttcttaccccaaccccttcaactctgagg--------------ggttgccccgctctgggcat--ctcccatccctgaggcatcaagtctctacacgattaagcacatcctctcccactgaggccagacaaggcagtcctctgctacatatgtgccagaagcttctgaccagctcatgtatgctctttagttagaggcttagtatctgggagctcccaggggtccaggttagttgacactgctggtcttcTGAgacctggaatggaggaggttcccaggattctgttccttctcttatactttgacattacctagcttcttttagactttaatttcatt---tgtaaaatggggacagttgttagttcctattgcataga-gtATAATAAAACCCTTCAAAACTATTTCATGCCTCCTTGCATTT---------------TTATAA-ATTCATTTCAGGT--TTTGTTTATGTTTGTT----------------------------------------------------------------------------------------------------TGGTTTTG-----------------------GTTTTATATACACTACTCTT-------------------------------TCCAGATGGCTAC----------------------TTTCTGTTTG-----TCAGTATTTATGTC--AAAGATCCAAATACTAAAACAATACTAT-CCCTTGTGTTCCAGCTTCCTATGTGTGCCTCACCTGTATACTTTT---------GATAATATCAATCCATC----TCTCTATGtctggtgactggttcacctgggcctaatgctatccccaccagtaactagctgggagaagttaggcaaatcactgaccctttgtca---ttctccttttctgtgaagg------------------------------------------tgtgtaggacaaa----------tgaactTAGGAACTTGCAGAAAGTATG-----AAATACTACACATTTCCTATTCCTCGCTTTCTTGTCTGTCTTCTAGAGGTTATTTTCTTCTGAGAAAGTCATTCGTAAGGACTATGCTCTCCCTAACCCCAGCTGGACTAAGGACCTCAGACTCCTTTTTGATCAGTTCATGAAGAAATGTGAAGATGGCTCCTGGAAACGCATGCCTTCACACAGACAAAACCCTACTCGAGCTATTCAAGAGTTCCAAACCCTTTTTGTTGGTAAGAATAATGCATAAATTATTTCCAATAAATAATATTTGGATATCAGG-GTAAAGTGTTGTTGCAGACTGAAGCACTGAGTATTACTTAATGGGAAGT
s HiC_scaffold_1 139357183 2118 - 233722169 tgctcctgctcctcctacCACGGAGTGCCTGAGGCAGGTTACCGCTGTTCTTC----TGAA-----ATTGCATCCAACCCATGAGTTACCAGGAGGCTGGTTCTTTCATCATGTTAAGTGTAGCTTTCCTGTTGTGCCCCAGAGATACAATCCACGTGCCGTAGCCACAAATCTGAATGAAGTAATAATGGTGCTGAAAGAGAATGCTGTAGACTTTGATGGTTTCTATGATTTTAACTGTCCTAAGATTTCTGCAGTGGTCAAAAGAACCAGTTTTCCTGTCTA--GTCTCTGAGTGTTTGCCTTTTCAGCTCCTTGGTAG-TCAAG----GTCTCTAAGGTGCCTACAATATTCCAGttgtctcctgagtactggaacaGCAGCAGTGGTCAGTGCTGCAGAGAAATACCATGGAGACCAGCCTTAGTTACTGCGACACTAACCACTCTT-TCCCAGCCCCTTCT-----ATTttagtctctttcttttcttaatttgctGTGTGATTCATCTTACTCAGCTCAAAAACCTAGAATTTGCTCTagtgtttctcctttttc----ttacC------AGTTGGTCACCAGATTCTGCTGTATCCTGCTGTGATTCTCAC-------CTGAACAGCCTCCAAACAGAGCCCTCTGATTACAGTCTTGGACACTCCTGCTATCTTTCATGTTATAGCCAAGTCTGATCATGTCACTCCCTTGTTTAA-AATCTCagaggccagatgtggtggtgcatccctTGTAATCTCAGCTGTGTGGGAAGCTGAGCAGTAGGGTC----------------ATAGTTTTGAAGCCTGACTGTGCAATTtagtaaaatcttgtctcaaaaatgaaaaaggcaggggctggggctttagcttagcggcataagtgccttccttgcaagcgtgcagtcatgagtttgatccccagtaccaaaaaaaaagaagaagaagaagaaaaaggctg----GGTGAGGACTTGGCttccatccctagtactgcaaataGAGACCAGAACA-------------CCTCAGAGAGCATGTCAGGCA--------------------CAG----TTCAAACCAGTTAGTTT---TTCTT------GAGGCTTTGCTT---------------------------GTGTCTCTGC-AGTCATCTCA----------------------------TCTGGTCCTTCTCTTGCACTGTGGCAGTTC------TCTTTGAGCCCTTaatttcatcatctgtaaaaCAAGGATAATAATCAGTACGTACTTCATATACTTGTGATAAGGacttttaaaactgtattatGCATCCCTGCTTTTGCAGTTTTCCCTTGTCTATAATACTCTTTTCAGCTAacatatttctgtcttttcttcttgttcttcttccccttccccttcctcctccttctcctcctcctctacctccttctccttctcctttgagacagagtctcattatgcagttcaggctggtgttgaactcactgtgtaacccaggctggtctcaaactcactgatcttcttcctgcctcagccttctgagtgctgggattacaggtgtgtaccaccacacccagctttggcATATTCCCACTTGACTAATCAATATTCAGGTTTTAAGAACCCA--TCTGAAGTGAATACCATTCCCTTCTGCTCTAACTTCTTGTGCATAGCTCACCAGTGCACTTTTTATACTGGGGATAATGTctactcttcaaattctttttgtct-----CTGGCTCATCTGGGCTTCAT--TTGCTTTGGCAAAAGCTAGTTGAGTGATGTTGGGCAAATCATTTACCATCTCTAAATCTTCCACTTCTCTCTAGAAGGTTGGACCAAGTGATCCCTTCAGTTTCAAAATAACTCTCTTTTGGGAAGAAGAAAGGCTGCAAGATGGTCTTAGAAAAT----GAGAATATATTCTTAAATAGGATGTGCCTCCTGTtactctgctttttcttt-tcttttagaggTCATTTGCTTCTGAAGAAGTTATTGACAAGGACCATGCACTCCCCAACCCCAGCTGGAGCACAGACTTACGATTTCTGTTTGACCAGTTCATGAAGAAATGTGAAGAGGGCTCGTGGAAACGTTTGCCTTCATACAAACGAAACTCAACTCAGAAGTTTCAAGACTTCAAAACCCATTATGTTGGTAGGA-------ACAGAGGCTTTCCCGTCAATAATATGTGATCATCAAATATAAAACTAAGAAACAGATTAAAGTACTAATTATTGCTTGAGAAGGAAT

a score=5694
s chr3            94322794 172 + 160039680 GGTTATTCATTCTTGTTAAAGTCCATTTAAAATAGACTGA---CGCCAAGAAGAGTTTCTGACTGTACCTCACAATTTTGCTTAGTTTACTATTAGCATTTATATACCATATTCAGTAATTCCTATGTGTGCGTAGGTACTATGCTTTCTTTTTCATTCTGTCCATGTATGTTTA
s HiC_scaffold_1 139362846 161 - 233722169 gattattcattttctttaaatgtcatttaaaCCATGTTTATTACTTCAAGAAGAGTTTCTGTTTGTACTTTGTCATTTTATCCAGTTTACAGTTAGCATTTACAGAC----TTTTCTGCTTGCCATGTATGATTAagtactttgttttcattt----------caggtATGTTTA

a score=32723
s chr3            94323422 1276 + 160039680 TGTGCTGTTTCATGTGTCCTTTCCATTCCTTTCA-------------TTGACATTTTAATCAGTTTTCTATCCATGTGTGATTTCATCAGTATACAGGAGCTTAATTCTGGTATGGCATTTATATTATACCTGGTTTTTTCCTC--CTCTACCCATATCCCTATTTCTTTACAGACTCGAAGTTTAAGAAAGAAGAACAAATGTCAAAGGCCCAACAGTTCACCAGAAGTTTCGAGGAAGGGCTAGGCTTTGAGTATGCGATGTTCTATAATAAAGTTGAGAAGAGGACGGTCTCCTTGTTTCAAGGAGGACTTCACCTGCAAGGAGTACCTGGGTAAGAGCCATGTCCTAGCAACATGGAGCTGATAAAGTTTTA----------CTCTCACAAACCCAGGAACTACAAAGATGACATTAAAATAGTAATGAAGATACATCCTTACTAAAATGGAAAGATGTCTATAACATACTATTGTAAATTATCTATATTGGTTACATTTGAAAATGTCAACATACtattaaatgatatatataatatattattataGGACATAGAATAACAGAGTATGAT------GAACA-CATTTGTATTG--GTTTAGCCATGAT------GTGGTGGT---------------------------AGTATTAAGATACTTAAGGTTTCTCCCTTCTATTT-------ATCTGTACTTACATAA-----ATTTTAGCTTTTT-TGTGCTATGATATGATTACTACTAAGCTCCAGCTTTATTAT-----AAGTATCCCTTCTGCTAT-------TGACAAAGTTAAGGATATGAATTTTATTTAACGTTAAATATACTGAACA-----TAAG-------------GTAAATGTATAAAGACACTTAAATAATTT-----CTGTCTTAAGAGGCTATC----TCCTGAGCTTCTTAAACTTTATTTTCCACTGCTGTTGTGACTAGATTTGTTCACGGAGGTGCCATTGCAACCATCATTGATGTCACTACTGGCACGTGTGCAATT---TCCGAAGGCGTTGCCATGACTGCCAACCTCAACATCACCTATAAAAAGTAAGTCTGTGATAAT--------TCTCCTTACA-Ttcttaagtcagagtctccagcagcagatcctaagtcaag---atgtatgtctgttactatacaggaagtgctcccaaaggactagta--aaggacagggaca-------------------gtgaggaagcca-ccaagcctg-----------agctctcaaagttctgcagag---agcttcagacaaactgtacaaagaagttctgaaaagagaaattcgtgcttcagaattagtccttcca---tcagtaaggaggctgggatct--atgc------------cagttgtaggctgaggactgccct-----------------------------ggCTCTCTGTGTTTGAGTAAAACA----TTAGGGAA
s HiC_scaffold_1 139363052 1436 - 233722169 TATTCTGTTTCTTGCCACCTTCCCATTTCTTTCAGCCTTGCACCTAGTTCGTATATTAATCAGTTACTTGTTGACATCT------ATCAGGGTACAGG----TACGTTTGTTGTGGCATTTCTTT-----CCAGCTTCTCACCCAGCTGTGCCTATCTACTTATTTCTCTACAGACCCAAAGCTTCTGAAAGAAGAACAAATGCCAGGGGCCCAGCTTTTCACCAGAAGCTTTGAGGATGGCCTGGGCTTCGAATATGTAATGTTCTGTAATGATGTCGAAAATAGAGTAGTTTGCTTTTTTCAAGGAGGTCCTCATTTACAGGGAATGCCTGGGTAAGAGTAATCTCCTCACAGTGTGGAtataa-aagattttatctcctagcTCCCTAATGTATCCAGAGA-TGCAAAGAAGACATTAAAGTAGTAATATAGGCATATATTTATTGACATCAAAAAATGTTTATAGTATATTGT--TAAACTA--catattattt---------------------ctattaa--tataattataatatgaaATTGTAGGACACAAGGCAATCAAGTGTAATTTGAGAGACCATCATGTGAACAGTCATTTAGCCCTGACTGAATAGTAGtggtttttcatgtacttatctgcatatcctaaattttaaaatgatgaatgtGTAT--AGTTTATTTAGTAAAAATATGGATTTTCTGAATTAATATTTTAGCTTTTTGCATGCTAGGATCTGAT------TAAGTTgtgattttattgtgtttaaGATCACACTACTGTGATACAAACACGGTAACATTGGAGACATGGATATGATTTGACATTCAGTAGACTGAACAGGGACTAAGCGACCTCTCCTatgtaaatgtataaaaatgcttAGATCACTTCCCCCCTCTCTTGAGaggctttctgttttctgagttttctgaaaacatttctcctcctctctt-taaTTAGATTCACTCATGGTGGTGCCATTGCAGCCATCATCGATGCCACTGTTGGTACATGTGCATTTAGAGCCAGAGGAATCGTCATGACTGCCAATCTCAACATCAATTATAAAAGGTAAATTTGTAGTAATTCTTTACCTCTCCTTAGAGGTCACAAGTCAGTCTCCCCAGAAGGAGATCCCGAGACAAATCTTTATGTGCCAGTGCTTATTAAGGAAGTGTttccagagaaa-agtaacaagaagAGGGAGAAGCAAGACAGTCAGTGCAGGTAAGGAAGCCACCCAAGGCTGAGCTCTTGACAAGCTCTCAAAATCCTGTAAAGAGTAGCCGCAACCTGATCATACAGATGAACTCC--ACAATGAAATATGTTCCTCAGAATT----CTTCTAGTCTCAATGGGGAACTTGGACTCTTCATACACCCACACGTCACAGGCAGAGGACAAGGACTGTCCTGGGGATTGTGAACTGTTAGGCACTCCTAAGGTTCTCTGTGTATGACCAATACAGGGTCTAGGGAA

a score=3869
s chr3            94326731 94 + 160039680 AGGAGCATCTATTAGACAGCTGT---CCCAGACACAAGGGGACACCATTACCCTAGCAATAAACCTCCCCACAGCAACAGCAGAGGCTCAGAGACAA
s HiC_scaffold_1 139373899 97 - 233722169 AGAGACACCTGATAGGGACCTGTATTTTCAGAAGCAAGAAGGCACTGTTATACTAGCAATAATCCTCCCAGTAACAACTGCAGAAGCTAAAAGATAA

a score=16651
s chr3            94328862 1097 + 160039680 TAGTCCCTTCATCC-ACAAGGTGGGGCTGTTGGAGCACAGGACAC--TTCCATGATTTACCTT----TCCCATCAGCC----TCTGACT-TCGACGGT--CCTTTGCATTGTGGTACTCCATTCTACCTCCAGGATTCCccaa--tgact--agccactagacacatgtacctacttaaatctaagtacatttaattaaaatagaataaactgtaagattcagtctctcatttatagtagccacatctcaagtgatcagtagccacatgtggctaccgcataggacagctcagttctgggatgtttatctcatcagagcaagttctac-agatagcactgGCTGTTGCCAGACAAGTGCTCTAAAAAGAA-GTTATAAGAAAATGTTTAATTACATCTGTGTATTCATTAAATCCCGgtgggtgcatgtatgccccagcatacatgcggggtccaaggacaacttgcagagtctcctaacgccatgtgcatccctaagattgaactcaggcttggctgcaagtcttcacctactgagccatctaactggtccAAAAAAATGTTGAGAAGAGATGAGAAGCTGACAAGGACTACCTCATGGC-CTGTTTT--CCTGTTGCTGG------------CATCAGACTAGGTTCTGGATCTCCTAATGGGAAAATCTCTCCCACAACAG--CTGGAAACCCCAGTGATCTCTTTGAACTGAAGCCTAGACGCCCAGTCTGGGACCA------CATGCCTGTTCCTCCCTGCAGGCAGTAATG----TAGGGAAAGTAAGCAGGAGAAACTGTTGGTGTTGGAGCTCAGAGGAATGTTCTAGCTGAGATAACCA---CTCACTGGCATTTGGGTAT----GACTCTCCACTCTGTTGTGCACCTGATAATCTTTTGGTATTACACAGATTTAATGAAAATTTTTTTCTTCCTT------------CTACAGGCCTATCCCCCTTCTTTCTGTTGTTGTGGTAAATAGCCAACTTCAAAAAATTGAAGGAAGGAAACTTTTTGTTTCCTGTACTATTCAAAGTATTGATGAGAAGACTTTATACACAGAGGCAACGGGTAAGAAGCTGCCACTGTCTCTCTTGGAGGCTGGGTTGGACTAGGGTTGTTTGCTTTCATTGTTTAACACACA
s HiC_scaffold_1 139374377  980 - 233722169 TAGTTCATTTGTCCCACACGGTGGCACTATAGAAGCAGAAAACACATTTCCATGCCCTGCTTTAAGTCTCTACCAGCTGAAATCTCACCATTAGCGATACCTTTCTCATTGTGGCCCTATAT---ATCT---GGATTCCCAAAAGTGACTGTAGCCACCAGTCACATGTAGCTATTTAAATAGAAAT-----TAGtcaaaattacataaatttaaagATTGGATTTCTCATTCGTGCTAGCCATGTTTTAAGTGCTCAGTAACTATATGGGG-TACCATGTTGGATAGCTCAG---------------------ACAGAAATTTCTACTGGACAGCATGGGCTTAGAATAGTAAACTGTTATCAGCAGCTTGTTGTAAAAGTCTTTCTAGTGACTT-----------------------------------------------------GCTCCAAAGAAA--------------------------------------------------TTGGTGAGAAGTTTT-----------------GATTATGACAGAAGAATGGAAGAAGCAGATGGAA----------GACCATCCCAAGGCTCTGTTTTACCTTCTTGATAGGATTTCAGCTTCCTTCAGACTTTGCTCTGGATTTCC-AGTGGGACAGTCCCTGCCATCACAGAGCTGGAATTCTTGTAG--CTCTCTGAA-TGCAGCCCCGCAGGGCAGCTTGGAAACTTTCAATCATCTGTGCTGCAGCGTGAAGAGAGCAGTGGTGCTGGGGTGGGGGAACAAGAGACAGGAGACTTGGTGAGCCTGTGAGGGAGGTTTTATCTCAGGGAATCATTACTCACTGATACC-AAGTATCATAGATTTTCACCTTCATCATGTACTTGATCATCTCTCCGTGT-ACATAACTatgaaaactaatttttttttccttttttccccatttctgcAGACCTATTCCTCT-CGTTCTGTTGTTGTGATAAATAGCCAACTTGATAAAgttgaaggaaggaaagtttttgTTTCCTGTGATGTTAGAAGTGTAAAGGAGGAGACCTTATATTCAGAGGCAACAGGTATGGAGCTGCTA----TTCTTTTTGAGGGGgtatt---------ttctttgctttggttTCATAATCCACA

a score=16954
s chr3            94331424 678 + 160039680 agggagggagggagg--gagggagggagggagggTAGAAATGCCTT----TGTGTATTTCCCTGCTTGAATTCATCAAACAGAAAACAGTTGACTTACAATCATCTGTTCTTTTGTTTTAGCCTTATTTATAAAGCTGGATCCTGAGAAACCTTTGACATAAAAGAACTTCTGATGAGTTCCACACTGTTCTGCATGAGGCTCTCCCCCTCC-----AGAAGCAGCACCCATCTCCACTCCTGTCACAGCTGCTGAATCTCCCAGGGAAAGCCTGCTCTCACAGACCCTTCAGAACAGCCTCTGAAATATGGCTGCAGGAACTCACTCTCCACCTTCCAGATTTTTTGTAAGAAGTACTTCCTGGGAGAGTCACAACAATAATCTGTATCTCTCTAGGACAAATGTGTAGTTCTAACACATGAACAGACT--TTAAAGCTAACAAGCATAGGACCTGCTCTGCTGTGGACTGCAGAAGAAAAAGACAAAAAGAAAAAAAGACTGTATTGAAACTTTGACTGCAAATGTGGAAATTCAAGAAAACCAAAGGCAGGGATAAATATATGAAGTGTTGTGAGTGAGGTGCGTGTGTGCGT-----AAGCCACACTGCGTGTTACAAAGCTAGGTTTGTTGTATCTGAACAAACATCTCTCTGGCTGTATTAGGGAACACAGCTCACTTCTGTGGGAATGG
s HiC_scaffold_1 139379336 656 - 233722169 AAGTAGGCAGAGAGGCTAAAGGCATGAATGTGAATATAAATGCCTTCCTTTGTATGTTTCTATTAGTCATCTCATCAGATTGAAGTCAGCTGACTTATAATTATCCTCTTGTTTTGTTTAGGCTTATTTATAACCTTGGATCCTAATAAAAAGCTGACTTAGAAGAGA-TCTGGCAAATTCTACCTCAT--TGTATGAG---CTTCCCTTCTCAGAGAGGAGTGTCCCCACTCTGTGCTGCTCACGCTGTTGCTG-----CCCCGAGAAAACCTGA---CACTGA-CCTTCTGAGCTGCTTTCGGAGCACCACACCCGAAGCTCCCTTTCCACCT---AACCTTTTCACAAGAAATCCTCCCTGTGTGAGTGTCGTCATTTCTCTGTAACTCCTTAGTATAACTGTGTTCTCCTAAAGTTCAAATAGGCTCCTTAAAGTTATACACCATGGCATTTGC-CTACCTCAGACTGCAG------------------AAAAAAATCTATGCTGAAATTTACACTGCAAACTTGGAAATGcaagaaaaccaaaga-aggaagaaatatgtGGGGTTGTGT-ATAGatgtacatatgtgtgcatatgaACATACATTGTAAATTACAAAGCCATCCTTGTTGTATCTGAACAAACAAATCT-GGACCAGGGTAGGAAGAACAGCTTTCTTCTATAAGAATGG

a score=5199
s chr3            94334571 115 + 160039680 GTAAATACATAGGCTTGAATTAATGCTACTGCGAATTCTAGAACTGTGAGTAGAAGTAAAATAATAAATGTAATGGTAGCTGTGGGTGGGCTAATATTTATTAGTACTAGAGTAG
s HiC_scaffold_1 120952445 114 - 233722169 GTGAATACATACA-TTGAATTATTGCTACAGCAATTTCTAATATTGTTAAGAGGAATAGAATAATGAATGTAATTAGAGCTGTAGGGGTGCTGATAGTGGTTAAGACTAGTGTAG

a score=5904
s chr3           94334571 115 + 160039680 GTAAATACATAGGCTTGAATTAATGCTACTGCGAATTCTAGAACTGTGAGTAGAAGTAAAATAATAAATGTAATGGTAGCTGTGGGTGGGCTAATATTTATTAGTACTAGAGTAG
s HiC_scaffold_1    79968 115 - 233722169 GTAAATACATAGGCTTGAATTATTGCCACAGCAATTTCTAGTATTGTCAATAAGAATAAGGTGATGAATGTAATTAGAGCTGTAGGGGTGCTGATAGTAGTTAAGGCTAGTGTAG

a score=5971
s chr3            94338959 255 + 160039680 gagcagagaaggacaaccggagaggtcaggaacaaggcatggccctcgggacgtggcaacaatgacccatttcctacaactaggtcctccctcctaag--tgccatttcctttccatCCTTTTCAAGTTATGACCCCG------------CCTGCCAATTAATGCACA--------GATCCAATCTCTTTCCCAAAAGCATCACCATTAAACATTGTTGCACTGGGACCAAGCCTTCAATGCATGAG-----------CATTCCAGACCtaaactgtgacatttcatt
s HiC_scaffold_1 168124321 276 - 233722169 gggaagggaggga------gaaggtttAGGAACAAATTGTACCTTTCAGGG-GAATCTCCAGTGACCTA----CTACAACTAGGCCCTACCTCCTAAAGTTTCCACCACCACTCAAAGCCTATCAATCTGTGAATCTATAAATACAATAACATATTAACACATTCACAATCCTCATGGTCCAATCACTT-ACCAAAGGCCCCAGCTTTGAACATTGTGGCAGCGGGGCCAAGTCTTCAATGCATGagcttttggaggacatttaagATCTTAACTATAACATACCTTT

a score=38262
s chr3            94342022 1485 + 160039680 AAGCAGCATCTACCCCTCCCCAA-CACTGGGCAGGGCTCTGGAG------CCAGCTAAAAGCACCTATGGGTGTTGTAACAGCCCAGCCCAGTCTTGCACAGTTTCTTCTTCAGCAGGAACTCTCTGCTAGAAGAAAGCCCGTGTTA----GGTGTGCCT----------GGTCCAAGCAAGGCTGCCTGGCACTCACTTGTCCTCTGGAGTCAGCCACTATTT----ATCCAAGCAAAGCCGGGATCCTGGCACTCAGCCATGTTGAGGACAAGTTTCCAGGGAGTGGCAAGACTTGTCCGCCACAAAGCTCTTTACAGAAGCCCCTGTCTCCTGCCCAGAGTCCACCTGGCCTCAGCATTTGGTTCCTCCACAGAGTCCCTGGTAAGT----TCCCAG-GCAGCCAGATGAGCTCCCTTCCTCTCTAAGGGCCTAAGGCCT---GAGCACCCTAAATCCTCTCTTCCTTCCTTATATCTGGGG---TGATAAGGACCAGTTTGGCTTGGCAAAGGGAAAATGCTTTGGGGTAGTTACTACATAAGCCATATCCTGAACTAACAGTATTAGGAC--------AAATACTGGTCCAAATCCTGTGTGGCCATTGGTAAAT----------ATTTCATAGAGTTCCCACTGCCACAGATAAGT-AGGGTATCCCCTGACAGAAGCTCCTGTCTGTGGGTTTGGCAATCCGCTGC-TTATTATCCACAGAAGAGACTAATGCATGA-CATCTGGC-----AGATAAACACATTATCCC------TGACT-CTGGCCATGATTTC-ACACTTCCTTGGGG----CCTGAAAGCATTTCAAAGGAGCTGCC------AGACAGGCCCATA-----------AGCTGACTAGCCCCTGTAGTGAGGGGCTAATAATG--ATCTCTCACTAACTGTGGGCTTATC-CCTCAGGAAAACAGTGTCTAGC-------TCACCCATCTCTCTCCCAAGTATAACAACTTTAAAT-------CATAGTTTCCCCACTTGTTCAATGGGTCTAATAGTAGCAGTTCCCCATTTCAAGGAACTACCCACAG-----TAA------------TAATGCTGCACTTCCATACAGCTTGTCTGGAATGACTAGCCCCATCTCCGTGCCAGACATCCCCACTTCTTTGTCTTTCACACCCCACTTATCCACAGAGGTTCCCAAGCTCCCTACAAGGAAGATGGGGTCTTTCCCTAGGCTTAGCACCCCAGCAGACAGGACTGAAA--GCCCCAACCCCAGAAACA---------GATGTCCC-CTACCCAAA-AACA-TCCCAACCTTCCAAGATGTCATTGTGTCACCCTGAATTTTCTTGCCTAGGTTGCAAGATTCTGCCCAGAGAAGACAGATTTGAAAGATTATGCCCTTCCCAATGCCAGCTGGTGTTCAGATATGCTGAGTCTGTATCAAGAATTTCTGGAAAAAACCAAATCAGGCGGCTGGATTAAACTACCCTCCTTCAAATCCAACAGAGATCATATCCAGGGCCTTAAGCTCCCATTTGGGCTGGAAACTGCCTCAGGTAAGACAAGTAAAGGTCTGAGAGGGTCCAGGAGCACACACAATCCACCCC
s HiC_scaffold_1 139399537 1547 - 233722169 AGGCAGTGTCCTTCCCTCCCCAAATGCTGGATGGGGCTCTGAGGTGGCTCCAGGCCCCAGGTGCCTGTGGGTGTTGTACCAGCCCATACTAGCC--------------------CAAAGATCCTCT-CTGAAAGAATGCCTGTGACAAAAAGGAGTGCCTAAGGGAAGTGGCTACACCCACAGCCCTCTTGTGCTCTCTTATCTT---------GCAGCTCTCCTCAGATCCAAGCG-------------GACATTTATCCATGATGAAGAAAGGCTTCCAGGTGGCAGCAAGACTTGGCCACCACACACCCTTCCCCAGGACCCTCCGTATCCTGCCCAGACTCAGCTCTGCCTCAGCATTTGGGTCATCCACAGACTCCCTGGTGAGTGAGTTCCTAGCTCAGTCAGATGGGCAGACATTCTCCCCA-GAGCCTATGGTCTACAGAGCACCCCGAATTGCCTCTTTCCAGCTTGTGACCAGAGGCACTATAAAG-------------GGTAAAGGGTAGGTGCTCTAGGAGA----CCATGTAGCTCAGATCCCAAACTAAATCCACCCAGACGCTTGCTTACATCCTGGTCTGACTCCTGTGTAGCCACCAACAAATTGCCATTTTGCTTCTGTGGAACTCAGAATTTTGCAGCTAAGTTGGGGTACTTTCAGACAGA-GAACCTGTCTGTGGTCTTGATAAGCAGCTCCCTTATTGTTCCCAGTTGCGATTGGTACATGAGCAGCTGACCCTATAGAGGACCTCCTCATCCCACTGATGGACTACTGTTCTTGTTTCCTGTACCACCTCTGGGGGTACCCAAACATGTTTCAGAGGAGCTACCCTGTCCAGGAAGGCTTACAGCTGTGAATGGAGCTGAT--GGCCCTGAGGTGAGGGGTCTGTAAAAGTATCCCTCACCAACTGTGGTCTTACCGCACCTGGTGGTCAGCGTCCAGTCCAACAATCAGCCTTCACACTCATAAGCTTGGCAACCTTAgctatatttcttcagtttttccatctgtgcAATGGGACTTATATTAGCAGTTACCAGGCTCAAAGAACCACTCACAGATGTTTAAATTGAGTATGTGTAACTCACCACCTCTGAGCTGCACAGCTCTAATTCTTGGCCCctattccttccct--tctctttgaCTCTTTATTATTCCTTGCTGAATCACCCATAGAAGTCCCCAGGAAATCTGCAGGGAAGATGGGCTCTTTCTTTTAAGTTAACACTCCAATAGCTGAGCCTAAAACATCCACAAGGCAGGAAAAAAACTGCCTGGAGATCCCACAACCCAAGCAGCAGTCCTTGCCCTCCAGGACGTCAACTGGTCCCCTTGATTGTTCCTTGCCAGGTCTCAAGATTCCTTC---GCAAGACAGACTTCAAGGATTATGCCCTTCCCAATGCCAGCTGGAGTCCAGACATGTTGAGCCTGTACCAAGAGTTTCTGAAGAAGACCAACTCAGAAGGCTGGATCAAACTGCCCTCCTTCAAGTCCAACAGAGACCATGTGCAAGGGCTGAAGCTCCCATCTGGCCTGATAGCTACCTCAGGTaaggc-----tgggcctgggaggacCCATGGGCACAT---ATTCACCTC

a score=17738
s chr3            94344166 627 + 160039680 TCTAGTCCTGATCTTGCCTTCACCCCTAGCTGGGGACTTTATTAGAgtttgtttccccaagacacagctcctct--gaagacaaggaccatgttttGCCCCCCCCCCTCCTCTGTGGAAGGGCTCCCTAGCAACAGAGCCTAGATGTCTTCTGGTTCTCTCTCCTCAATCTTGCTAAA-------CTCACAT-----------GTCCTGACAGATCCCCATG--CCCTGAAGTATCTCTGCTTCAAATTGTGATCTCTCCCTAGACAAAC---------AGGACTGGCGCCTCTTTACCAGGTCCATACAACTGGAAGGACAAGGCTATGAATACGTCATCTTTTTCCACCCATCTGAGAAGAAGTCTGTCTGTCTTTTCCAGCCAGGCCCCTACCTGGAGGGGGCACCAGGGTAAGACTTCACACA-GGCCAGGGTGGTTGCCTCTCAGGCTTGGCTCCCCAGGGTGGGTCCAGCACCCACCAGGTTCTGGAGTCTCTAAGAGACCTAAAA--TGGGG------CACAAGAAACTGGGTGTCAGCTTTTCAATGCCAGGTCTGGCAGGAAAATCTGGGTTA---GCTTGTCGAGGCTCCATTGTGCATGTATGAAGAAC-CCCTTATTGAAGCCTCAGAATGTTCTAAAATGAAAAGTCCTGAGAGGCCA
s HiC_scaffold_1 139402030 651 - 233722169 TCTGGCTCTGATCCTAACCCCACTCTGAGCTGGGGAACTT-CTAGAGTGT-TGTCCCCCAGAAACAGGCTCTCTATGAAGTCAGGGACTATGTAT---------CCACTCCCAGTTCAAAGGCTCCCT-GAGAGATACCCTGGGTGTCCT-TGGTTGTCTCCTGTGACCTGTACCAGAGGCAGGGCTCAGACCTAGATACTGCATCCTAGCA-AGACCCATGACCCTTGTACCCTCCTTCCTCCAGCTC---ATCTCTCCTCAGACATCTCTCCTCCTGGTGACTATCGAATCTTCACCAGGTGCATCCAAGTGGCAGGACAAGGCTACGAGTATGTCATCTTTTTCCACCCAACTAAGAAGAAGTCCATCTGTCTTTTCCAACCAGGCCCTTACCTGGAGGGGCCTCCAGGGTAAGGCCACAGGCAGGGCTAGGGTGGGGATCTCT-AGACTTGGCTCAGTAGGCCAGTT--GGGCCCTATAAGACCCTGGAGTCTGCACCTGTCCTAGGAGTCAGGGTGGCATTACAAGGAACTGGGCTTCAGCCTCAAGATGCCAGGCCTGGAAGAACACATTGGCTTATATATCTGGTTCAATGCCACTATGTAGTTAAAGAGAGCTCCCTTATCCAGATCTCAGAATTTTCCAGCAACAAAGGACCTGAGGGGCCA

a score=44038
s chr3            94345353 1799 + 160039680 AGCCCCAGGTCTGTTTTATGTCATTTGCACATTAACTTAAGATGCCCCCAATACTTTCTCCTAGCCTAATCAACAGTGATAAAGGTATGTCACGAAGGTCAGTTTGCATAAATGATAATGAAGGTTTTATTTACTTGAAATAAAGCAAATATCTGTGGCATCACACCGAAATGGGCTCTTAGGTTTTTCCAGGCAGTACTTCTCAGGAGCCTACCTTGCTGGC--CTTAGAAGCTGTGGGCCCCA-----CATTGGCTGAGTGAGTGAGAGACTTATCAAGTCTTtggtggctcacaaatacagtctaagaactcaggaggctgaagcaggattgcagtgagttcaaggctagcctagacttcagagcaagatcgtgtccccacaaacaaaaTAACAAAGGACTAAGTCAGAAA-GTTCAGACTTTTCCCACTCCTTTCAACACATGCAACCTTCTAAGATGTGGCAGCTGCAGCCAGCAATTAAGTGACGGATCAGAAAGATGTCCCCCATTAATTCTGTAAGGAAAAAACAATCCTGTT----GATAAAATAAAATGGTTGTATCATCGGTTAACACATGCTGAAGCAAAA-AAGAGAGAAGTTAG--TTATATTTGACCTTCTGAAGCCCACAGGACATATCTCTGTGTCCGTTCCTATTTGGCTGCCTGGGGTAGAAGATCC-CCTTTGGGGAACTCTTGGGAAGAAAAAATGCTTGAGAGGTGTGGTACAGTATGGAGAGGAAGCCCAGCATAGGGGTCTGCCCAGCAGCCCTAGCCCTAGTCTTGCTCCCCATCCCGATCCCCAGGTTTGCTCACGGAGGGTCACTGGCAGCCTTGATGGATGAGACATATTCGAAAACTGCATATCTGGCTGGAGAAGGACTATTCACACTAAGTCTAAACATCAAGTTCAAAAAGTAAGTGTGGGTCCTCTCGCCAT-GGCTGATGTCTGGGTTCTGTTTTTA--TCGTGGGGTTATAAAACTTTGCAAGTT-GAGTGTGAAGATCCTGCCTGTCTCCCTCCTTTCC-------TGGCAAGCATATCCCTAGACCCAGGCCAGAATACAACCTCTGCCATTCAACACCAGAAGCCAATGCATAGCCCCAAACCTGGGGCTGCTTCTGAGTCCTGGAGGCAGGGTGAGGTGAGCCAAGAATGGAGCCAGTGTGGGAGCAGGTGGGGAAATGAATTCAACTGTCACCTCTTCCAGCTTGATCCCCGTGGGCTCTTTGGCTGTCCTGGACATTCAAGTAGAAAAGATTGAAGACCAGAAACTCTACATGTCCTGCATCGCCCAGAGCAGAGACAAGCAGACCGTCTATGCCAAGTCCTCCGGTAAAGAAATCTGCAGCCTCAGCCTGGGCTGCCTGCCACTACCCCACCCACAACAAAGGGTAGGGAAGATGAGGGCAAAAAGTCAAATCCTAAGCTGGAGTCTAGGACTTTTAGGAGTGGAAATGT-TACTTGCTAGAGACATGGATGAAGAGAAAGGGAAC------------------AAAGTGAGGATTACCCAACCTGCACCGCAGGACAGTCTCAAGTGATGGGCTAATCTACAATA----ATGTTCCATGCCCAGGCAAACTCCTGCTCGAGTGATCCTGGCACTCAGTTCACTCCTTTCTTGCAGGTGTTTTCCTTCAGCTGCAGTTGGAAGAACAGT---CCCAGGAGCAATGACCTTG---------------ACCTTGATGACTCAGTG-GCC----ACATAACAGACAAGGGTCCCCAGGAATCAGGTGGCAGAGGAGG--GAGAAA-----------AAGGCATTTTTACCACCCCACGGTCAGTCCAAGAACCTTC-TGTAG-TTGGAATCAAAATCGTCCGTAGGCC
s HiC_scaffold_1 139404128 1721 - 233722169 agaCTCAAATCTGTTTCAAATC-------TGTTAGAGTTGGGTGCACTCTAT---TTTTCCCAACTTAA---ACAATAAAATGGCCTTGGCATAGAGGCTGCCTTTGTAAAATGCGAATGAGCGTTTTATGTAGGCTAAACTAAGCATATGTCTGCAGCATCTTGCTGAAGCAGGCTTCTGCCTTTCCATGGGCAGTGCCAGTCAGAAGTC-AGTTTGCTGGCACTTTATATATTGTAagttacatttctcatttgcc------------------------------TGTCTTGAAAATCAGGTCCACCACT-----------------GGCTGTAGTGACT----GGTAAGATAAGGCCCAAGGTCATAAGAACTTCCTTTTAAA-------------GACAAAGTCAAAAAAGTTCAGAGGTTTTCCATTCTCTTCATT-CATGTACACTTCCAAATTATAGCAATCATTGTAATCAATTAGATGACAAATCAAGAAAACGTTTTCCTTTAAccctttgagaaaaaaa--attttttttccaggagaaataaaatactcgTATCA-----------GTgctgaagcaaaacaaaagaaaagctcagCTCAGATTTGATCGCCTG---------GGATGCAGCTCTGTGTCCTTTCCTGTTTGGCTGCCTGAGGCTGCAGCTCTATCTTTGGAAGGCTCCTGGGAGGGGAGGA-GCATG---GGGTTGTCACTGC------------CCAGGTGGAGGAGTCTGCCCACCTTCCC-AAACCTGGACTTGCTCCCCACTCACATCCTCAGGTTTGCCCATGGAGGGTCTCTGACAGCCATGATAGATGAGACCTTTTCTAAAACTGCCTACCTGGCTGGAGAGGGGCTGTTCACGATGAGCCTCAACATCCGGTTCAAAAAGTAAGTATGGATCCCTAGGGCATTGGCCCAAGTCATGGCCTTTTCCTCACTTGGAGAGGCCCT----CCTTGCCAGCTAGGGTATGG---TCCTGCCTACTGCTCTCCTCCCCAACCCAGTCCCGGGCTCTCCTTTCATCCCTGTGCAGAGGACAATCTCTGCTGCCCCACATTGGAACCCAACAAACAGTTCCTAAGATCTGGCCACTTATGGGTCCTTGAGGTCCG-TGGGATAAA--GAGAAGGGGGTTCAGGGGTGAGGAGATGGGGAA-TGAGTTACAGTGCCTGCTCCCCCAGCTTGCTCCCTGTGGGCTCTCTGGCTGTCCTGAACGTCCAAGTGGACAAGATTGAGGACCAGAAGCTCTACATGTCCTGCATTGCCCAGAGCAGAGACCAGCAGACAGTGTTTGCCAAGTGCTCAGGTAAAGAAATCCTCAGCCTCAGTCCCAGC--CCTGCCACAACCCACCCCAGAACAAATGGAAGGGAGGAAAATTGCTAAGGATCCACTCTCAACCAGGGCCCCAGCTTTTTAAGGGATAGAATTTTGCACCTGCTACAGACATGGGTGAAATGAAGGAGAACTCAACTAGGATGTCTTGTTAAATAGGGGTTATACAACCTATACCACAGGACA------------GGGGTGATTTGGAGCAAAATATGCACAGCACCTCAGCGAGCTCCT-------TACTCCCAACACTCAGCTCATCCTTCTCTTGCAGGTGTCTTCCTTCAGCTGTCACTGGAAAAAGAGTCACCCTAATAGTAGTCACTATGACATCAGCAGAGTCAACCCTGACGGCTCTGTGTGCCTGGAACTCAACACACAA-------CAGGAAGCAAGT-GCTGTGGATGTTGAGAGACCCTCTCTCTGAATAAACTTTCACTGCCCCATGCTC--------AACCTTCTTGTAATTTGAAAGCGAAATCCTCCTACGGCC

a score=6651
s chr3            94351090 178 + 160039680 AGAGAGAATGAAACCCTTTACAG-GTGTAGCATGG------AGTTGTGTACAATCTGAGCATTAGTGGTAAGAAAGATGGATCTT-CCAGGAACTAGACCACCTGCTTCTAAGCAGTCAGTCTAAAGTGATGGTCAAAGGATAGGTAGACATGATTTGAAGGGCTTTGACCCAGAGC-CTCCCAAAA
s HiC_scaffold_1 139408935 179 - 233722169 aaaaagaatgacattttTCATGGCATGGAACAGGGCCAGAGAATTGTGCATAAATTCAGCAGTAGTGGTAAGGGAGGTGGATCTTTCCAGTAACTAGATCACATTCTTCTACGCAGTCAACCTCAAGTGATGGGcaaa--atatatagatattat------GGCTTAGATCAAGAGTGCTCCCAGAA

a score=11791
s chr3            94351240 598 + 160039680 AAGGGCTTTGACCCAGAGCCTCCCAAAAGCTGGAGAC--------AGAGATAGTacacacac-----acacacacacacacacacacacacacacacacTTCTATTAAAACCCTTTCTCCTTTCTTCTTTGTG-TTTCACAGTTGCCCTTGATATTCTGTTAAACCCAGAGTCTAAACCATTATATATTGAAAAACAGGTTTTCCTCTACTCATGGTCAATGTGAGTCCATTATTCATCCAAACACTCCTAGAAGAAGAGGAATATATTTCATCCCTCTTAAGCAGTTAAAAATAAATAAGGGGTAGAGAGACCATTATGTTTGAG-TTCCATA-TGAAATAGGTTGGTTGCGTTCTGGCACTTTGCCATAC--------------------------------------TGTGGAAATCTGCAGAATTGGAAGCCTCTCAGGCA-----TATCA-CCATGGCC----AAGCCTGACCTGCCAG----TGTCCTAAAAGGGAAAGAGATCAGCAG--AGTTAGGAAGCTTTATTAGTGTCTAGCACTTTGACCAGTGAGGCCTCTGGGGCAATTTTGCAGCCTTCTATCTAGGTGAAACAAAGGAGATGCTGCTTTCTCATTTGCAAACCTACTCCCTCAGTAGTA--TTCATCTGGAATGCAGCTACTG
s HiC_scaffold_1 139409493 616 - 233722169 AAAGGATGtgaaccagtgcttcccaaaagCTGGAGATGTTTTAGGAGCGATAGCCAACAATCTTGTGACAGCCAACTGTCCTCTCCC-TGTATACTCAC-------AAAActcttt------tctcctttgtgcttTCACAATTGTCCTTGATAATCTATTATACCTAGAGTCTAAATCACTGTATACT-AAAAACTGTTTGCCCTTTA-TCATGGTCAGAGAGAAGCTAATCTTCATTCAAACACTCTC---AGAAGggaaatgtatttcatttttcctatacaattaaaaa-aaagaaagacaaacaaaacagttGTGTTTGAGTTTCCATATTAAAATAGGCTGAATGCACCCTGGCACTTGTCTGTCCCCACTGACAAGTTTCTAACAGAAATCAGCTCAGCTCAGTGTAGAAATCTGCAGAGGTGG-GGACTCTCAGGCAAAGAGTGTCAGACATGACTGGAGAAGGCCGGCTGGGCAGGTATGGTCTTGGAAGGGAGGTAAGTTTGTAATCTGCTAGgacacttctctattttctgg-gCCTTGGCA---GACGCCTCT----------------CCTCT-CCCAG--GAGGCCAAGTAT-TTCAGCTGTCTGGTTTGTAAA---------TGAGTGGCATCTTGATCTGGACCTCAGCTACTG

a score=85962
s chr3            94361600 3013 + 160039680 TAACCAGCT--GTCCTTAGTGTCTTTATATCCAGAAATCCTGAACC-TATTTCTTCCCTTTTTGGGGTACGGGGTGGATATAATTTAGGGAACTAGTCATTG---AAAATCATGATGTTGAGGAGTTACTGGGATGGCTCCAGAGG--AGTAGAAGATATGCTgggtgtggatacggctaagggtggaagatatgctgggagtg----gaagatatgctgggtgtgggtatggctaagggt---------ggggtgggggtgggg---atggtggGGACAACAACTAGCCACTGGCCATTGATGACAGTGTCTGTTCTCTG-------CCCCACTCCCCCAACTTTAGCAGCAGGGGATCAGGTCCAGCAGACTGCTGCTGGAAATCCAGCTCTGACTGTAGGAAGGAGTTAAAGAAGTCTTGTCGAAGGCCAGAGGGACA-GACCCGTGTTTATCCAGGAAAAGAAGTCAGACGTAGGCAGCAGAGGCCCCTGCCAGCTCCTCCCTGAAACACTGAGCTAGGGGAGCAAGCTAGAAAGAAAGCTGGTCCCCTACGGTTCTGCACTCTTTACAGCCAGAAGCT---------------GCGACTGCCCATAGGTAAGGTCTACAATCTTAGAGCATTACTGAGCCAGATACGGGCTAGGAGTCCCTGGCAGACTACTGGCACTTTCATTGTTCATGGTGATTCCACGCAGGGGTGCACTGAGCTCACTGCAAAGAAGCCTTCCTGGGCCTGCACTGGG--GGTGGCAGAGAATCAATAGTGCCTTTGTGCTCTAAGGTTTCCTAAGGAAAAAGAGTGGACAGTAGGAGGAACCGCCTAACTGCTCAGCTCCGCCTTACAGCCTTGCTCTGTG----GCTGCGGCCTGGCTGAGAAGCTAGGGATAAAGAGGAGGGGAGAGGGGG--TCTGTGCCTCATCGAAAGAAGGGAATCTCCTTGGACTGGCCCTGCTTGTCTACTGGTCAGCAATCAGGTGTGTTTCC------GGCTGCCAGGAGCAGAAGTGAG-TCCTTTTCAGG-----AGCAATTTGAGAAGGTGAAC---GTGATTTGGGGAGGAGACAAGAGT---TAGGTGGGGCTAGTGCCCAAAGATAAGTCAAATCAGAGAAGCTAACACAACAGCCGCCTGCACAA-----GCAATGAGCTTCCAGGGCCCCAGACCAGATTCTAGGTGCAGGACAAGAAAGCCAGTCTACTTAGGGCCGTGGTGACCTTATGGAACTAGAGTATATATGAGCAGAATT-AATATCTGGGTCTGTAATTGTGACTACAA-ATCTTTAGGTTGTACGGGTGTTAGTCCCTCTAACACTGAAGTGGGTGGAACATCCTTAGCAATAGGAAGTCTAAATACTTAGCCATACAAGGCCTCCTTCTGAAAAtcattttaagatt-atttctaagacgtattttatgtgaatgttttgcctgtgtgtatgtatgtatgtatgtgcaccacgtgcatgcctggtgcctgcagaggtcagaagagggcgttggatcccttggaactggagttgtggatgagtgtgaattaccataggggtgctgggagccacagcttctgctggaccaacaagtgctcttaaccattgagccatctcCAGACTCTGAAAAAACCTTCTGTCTGGTCTCGTAATCCATTTCTCCAGT------TTCCAGACTT---CACCTGTTCTTTTACCTGCTTATATATGCCAGACTCGTGCCCCATGAGTGTGGGGACAAGGCCACAGAGGCAGACAGCTAAGTGTTTGCTCTCCGCAGCAGCATC--------GATTCGCATCCTCTTCTGTTCTCTCAGCGCACC-----TCAGGCCAGAGCCTCCAGCCGGGAGGCTGAACTTGGACCTTCTCCGCC---------TCGGTGTTCCTTTACCCCCACCCACTGCATGTGGCTCTTGGAGAAAGCCGGTTATAGGGTACGGACCGCAGAGGCCCGGGCGCTGCAGGCGCACCCCAGCCTGGTCCCCAAGCGCCAGGCCCGGGGCTCGCCCTCGCGCTGCAACCCTAATGTCCTCACCCCCGACCGCATCCCACAGTTCTTCATACCGCCTCGGCTCCGGGACCCAAGAGGCGCCGAGGGCAGGGTGGACCGCAACCCGGGCGGCCGGAACCTCCCGGTGGCCTGCTCGCTGCCGCACCTGGCGGGCCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCACACGCGTCGCCGCGAGTCCTTGTTCCACGGGCCGCG---CGGCCTGGCTGCAGGCCTGGCCCCGGCGCAGTCACGGCTGCACGTCTCGGCCCCCGACCTCCGCCTCTGCCGGGCCCCAGACAGCGACACGGCCTCGTCGCCGGACTCCTCGCCCTGCGGCTCCCCGCACAC------------------------------------GCCCAGGCCGCAGTCCCTGTCCCCCGACGAGGCCAGCTCGGCGGACACTAGTCCGTACGCGCCGCGCCGT------------GCGCCACCGCTCTTCCACCTGGACTTCCTCTGCTGCCAACTGCGGCCGACCAAGGACAGCGTGCTGCGCCTGGGGCCCCGCGGCGGGCAGCTGCGCCTGTCCACCGAGTACCAGGCGGGGCCCGGGCGGCTGAGGCTGCGCCTGGTGAGCGCCGAGGGGCTGCCTCGGCCGCGGACCCGCCCCGGGAGCGGTGGCGGCGGCTGCTGCGTGATTCTGCGGCTGCAGCCGCGCGTTAGGCCTGGAGCTCAGCGGAGCCGGGTGGTCCAGAGCAGCTGCAACCCTATCTTCAACGAAGACTTCTTCTTCGAGGGGCTGCGCCCGCCGGATCTGGCCGTCCGCAGTCTGAGGGCCAAAGTGCTGGACAGGGGCGCGGGGCTGCGCAGGGACGTGCTGCTGGGGGAATGTGAGACGCCCCTCATCGCCCTGCTGCCCCCACTGGCTGGAGGTCTAGGCCCTGGGTCCTCCCTGGCACCTACTCATCTCAGCCTGTAGACTGATAGACACCACAGCTTTCTTGGGAGGTTTCCACTGGGTCTGCAGACTTCATCCTTGCCACCTGCCCGGCATGTATTTATTTTTGTTAATAAAACATCAGTTTGTCTCTAGCTGCATGCTTTCCAGTGGGCACCAAAAACTCTAGGCTTTGCAGCA
s HiC_scaffold_1 139414613 2782 - 233722169 TAACCAGCTCTGTCCTCGGTGCCTCTGTGTTCAAAAAGCCTGAGccatttttcttt---------------gaattgttaGAATTCAGAGACCAGGTCACTCTGCCAGGTGACTCTGCCTGAAAGCTCCTTGGATGGCTCTGGAATTCAGCA---------CTGGG----------GCCAAGGCAGGAGTCCA-GCAAAGAGGGTTTTGCAGATGTTCTTTGAATGGCCATGGCTATAGGCTTCTCATGGGAAGTTGAGGTGAAGGCCACTGCTGCGCTGAGGAATGGACCATGTCCCCTGATGGCAGCCTCC-TCCTCTGTAGTTGACCCCA----------------AGCAG------AGGTCTAG-AGGTTGCTGCTAGAAACCTGGCTCTGGCTGGAGGAAGAAGTTAAGAAGGCCTGTCTGACGGCCTCAGAGACAAGAGCTGTGTTTATCCAGGAAAAGAAGTCAGACGTAGGCAG-GGAGGCCCCTGCCAGCTCCTCCCAGAAGTACAGGGCTAGGGGAGCAAGCTGGAAAAGAAACTGATTCCCTAGGACACTGCACGGCCTAGCGCCAGAAGCCAGAGGCCAGGGTCCAGCAGCGGTTCACAGGTAAGGCCT------TGGACGCACCAGGGAGACCATGAGGGACTCAGACTTCCCAGAGGATTACTGAC---------------------TCGATGCAGGGGTGCCACGAGCGCCCAGCTGAGTGTCCTTCCCGAGCccgtggggggtggggggtggagaaTCAATACTGCCTTTGTGCAGCAAGGTTTCCTAGTGACAAAGGCTGAAGAGTGGACGGTTCGACCCAACCGCCTGGTCTTGCCCTGCCTACTGGGGATGTGATAGGGTGCAG--GGGTTGCGGAGCAGAGggtcagggctggggctgggggtgatTCCGTGC---ACTCCAAGAGGTGCGTCTCCTTGGACAGACTTTGGGTGTCCTCGGGTCAGCTGTCCCGTTTGTCCCCCCACCCTCATGCCAGGGGCAGGAGTGAGGTCCCTTTCTGACCCGCAGCAACTTGAGAAGGCAATTATAGCGCCTTGAGGCAGGAGCCAGAGTAGGCAGGTGGGGCGAGGACTGAAGGACGGCTCAG-TTGGGGAAGCTGG-GCACAAGCAGCTTGGACAACGCAGGCAGGGAATCTTGAGGGCACTAGATTAGATCCTGG----------AGAAGACCCATCTA----GGACCACAGTGCC-----AAGGGTAGAGTGCACAGGAGCGGGATTCGGGATGTAGGCCCAAGCTTGTGACCACAAGATCTTTTGGTTGCGCCGCTGTTG----CTCTGGTTCT-----------------------AATAGTAACTATGG-----------------------CTCTAGTGGTTGTGTTGAGCTCCGACTCTGAGGTGTCCTTAATACTAATG-----------------------------------------------------------GGTCAGTG-------------TCCTTGGGATCCGAGGCCTAAATATG----------------------------------------------AAAATGTGGTCCC----------------------------------------CCGGCCGCGTGCTCCATCCCACCCACCCCTAGTCCCAGTCTTTGCCATCCTTTCTTGTTCCTGCTCAATTA--CAGGCCTGGCGAGCCACGAGTCTGGGG---------CGGTGACGGGCCGC--------------CCGCAGCATCACCTAGCTCTGGATCTGaatcctct-ctctcctcccagcCCAGCGCCGTCCAGTCCAACCCTCCCAGCGGAGACGCTGGGTTTCACCCCGTCCAGCCCTGCGGAATTTGGAACCTCATCAGCCCCACCCACTGCATGTGGCTCCTGGAGAAAGCCGGCTACAGGAGAGAGGGCGCGGAGCCGGGGACCCGCTGGGCGCGCTGCAGGCTGCTCCCCGAGCACCGCGTCCCGG---TGGCCACGCGC--CTGGCCCAACGTGCTCACCCCGGACCGCATCCCGCAGTTCTGCATCCCGCCGCGGCTGGCGCACCCGGGGGGCACTGAGCGC---------------CCTGCCGTGCGCAGCGTCCCCGTGGCGTGCTCGCTGCCGCACCTGGCGGGTCGCGAGGGCTGGGCCTTCCTGCCCGAGAGCCCGCACACACGCCGCCGCGAGTCCCTGTTCCATGCGCCGCCGCCCGGCCTGGCTGCGGGGCTGCCCCCGGCGCCGGATCGGTTGTACGTCTCGGCCCCAGACCTGCGCCTCTGCCGCGTCCCCGACAGCGACACGACCTCGTCGTCCGACTCGTCGCCCTTCGGCTCCCCACAGCCCGGCCCGGGCGCGGTCGCGGGCTCGATCCCAGCCCGGCGCCGGCCGCACGCGCGGGCCCTGGAGGGGGCCCACTCCGCAGTCGCCAGCCCGTTCGCGCCGCGCCGCCACGGGGCGCCCTCGCCGCCGCTCTTCCACCTCGACTTCCTGTGCCGCCAGCTGCGGCCGGCCAAGGAGAGCGTGCTGCGCCTCGGGCCGCGCGGCGGGCAGCTGCGCCTCTGCGCCGAATTCCAGCTGGCGCCCGGGCGGCTCCGCCTGCGCCTGGTGAGCGCCGAGGGCCTGGCCCGGCCGCGGGCCGGCCCGGggagcggcggcggcggctgctGCGTGGTGCTGAGGCTGCAGCCCCGCATCCGGCAGCGCGCACAGCGCAGCCGCGTGGTCAAGTGCAGCGCCAACCCCATCTTCAACCAGGACTTCTTCTTCGACGGGCTGGGCTTGCCAGACCTGGCCGCCCGCAGCCTGAAGGCCAAGGTGCTGGATAGGGGCGCCGGGCTGCGCAGGGATGTGCTGCTGGGGGAGTGCGAGACGCCCCTCATTGCCCTGTTGCCCCCGTTGAGTGCAGGGCTGGGTCCAGGACCCTCCCTGGCGCTGACGCATCTCAGCCTGTAGCCTAAG----ACGACAGCTTCCTCCAGAGATCGCCACTGTGCCCACCGTCCTCATTCTCTTCATCTGCCTGCCGTGTAT---GTTTTGCTAATAAAATGCTAA---ATCTCT----------TCCCTTGTTGGC-------ACTGTGGGGTTTGCAGCA

a score=37695
s chr3            94365552 3504 + 160039680 CAgagcttggtggctcatgcctctaatcttagcacctggagggcaggggcaggtagttctctgaaaattggaagctagtttgatctacaaagcaagttcccggccagcaaggcctgtgtagtgaaattctatctcaaaaaacaaaaCAAAAAATTAAAGATCAGAGAGAGAAATGAACATAATGTGTGCATGCATGCTTCTaatgcttacttagttcagtttctccacag--tccaggacccaaagccagggaatggaaccacctacagtgggtcagtcttccacatcaagtaattgcaatc----aagagaatcccccactgacatacccacaggccaacatgatctagact--tttctcttcccaagagattctagactgtgtcaagttgacaattaaaactaaccatcacaGGTCCCTCGAGTCTAACAAAACCCTGCGCTTTCAGAGAGCCCTTGAGTCCTGGTGTCACCCCAGCAAGAGC-----------------AGAAAGCCACCCTCTCCTAA-AGGTCCCTGTGTCTGAAGAGAAGAAACTGGCCTTTCCT---------ACCCCTTAGATCAATATTTGTCCTAAAGACAAATGAAATTTTTGAACCTTAAGAGTGAGCCAGGCGAGCACAGACTAAACACACAGTGCCCTTTAACCCTTCCTGCCTCCCTCtggctagtccatacacctgtgcacctgtgcaggagcaggaagaatggctggagtcaagaaccaaagagtaaaccaggtatgctagcaaacacatttaatcccagcactcagcggcagagacaagaagatttctgagttcaagtctacagagcaagttccaagacatacagacaccctacagggGCTGGGGGGCCAGGGGAGAAGCACAGAATAGTGCTTGGGTACCCATAAGTACTTGGGATTATAGGGACTGGGATCTGGGACAGAGGATACTATCAAGGAGTGAGTGCTGT-TATCAGGGATGCCAGAAAAGGCTACTCCAGCCAGAAGATGAAGGTGAAAGACAGTGGAATAAAA--GTGGGTCATCTTGTGTTTACCTCCTACCTGAAAGCCCTTGACGTCAGCAGTGACCTTCT---CTCTGCCTCTTCCTTCCTGGGAACTTGTTCCTCCTG-------CCAGACTTGGAAGAGGGATAGAGAAAGGCAGGTACACAGCAGGCCCTAGACCACTTCCTC-CTTCCTCTTAG---CCTTTCTCACTTCCCATGGTGCCAATTGTCCCCGTATAGGACCTGCTTCTTCTTAACAAAAATCTCAGCAGGGGCAGCTacacatacacacacacacacacacacacacacacacacacacacacacacacacaAGTCACCCTTCTCAAGCTCCTTCTACCTCCACTAGGTTCCCACCACCAATCCCCAGGCCAAAGAAACCTTGCTCCAGTTGTCCACCAGATGGCAGCATTGACCAAACAATCCTCCGTG---CTGACAGCAACCT---GATCAATGGGTAGGA-------TGGACAGCT-TCA-AACATTAGTTCCTCCTGGCAACTGCCTCTAAGGTGAGTGTACAGTTGTTATTCAACATGACCTTCGCCCTTAGACAGATAATAAAGAAGAAAACTAggtgacatgactcaaggtacttgtcacgaagtctgacagtcttgagtttaatcctagagatccacttggtggaaggagaCCAATACACACATAT----AATGTAACTTCTAAAATCTGTATTAAAAGCCTGAAGGGTTTCTTCTTCC-CGGGATAATAGCTCTTCAGTCACTTCACAACCTGGCACTTCGCACTTAAACCTGTGAACTCTGAGAAGTCCGCCCACTCCCCAAGCTCTATctgtgctgtgctgtgctgtgctCTGTGTGTACATCGGCCCTCAAGTTCTTTCATAACAATCCCTAGTGAGCAATGCAACTTGGAAGTATCTGGAAGGATGTCTATAGGTCAGTTTGCCCGCCTTCATCAGTTCCTCCAGCAATGGTGGGTGCTATAGGATGCCAGGCACTGGGGCCAGCAGGCTTGAAAACAAACGCAGGAATCAAGTGAGTCAGAAAATGAAC-----AAATATCAGTAAAGAACTAGCTGGCGATGGGCCGTAGAGAAAAGTAAAGT-------------AAGAAAGGG----------GAGGGAGGCAAAATTACAGGAATGGAAAAG--AGAGGGAGGGCCTGAAATACTTTTTT-------------------------------------------------------AGCTGCCATGT------------------------------------------------------------------------------------------------------------Gtactt-----tgtaccaggccttgcactttaccc-gctgtcttatc-------tcaccaccactgggtaaagtagg--cattaccagttcacaaaggcagaaagagatccgagaggttaaataaacttgcctgaggATTGGCTTTGGCTGTGAGGAAGGCTTCTAACAGCGACTCTATACCAACATCCTCTGCCACAACCCAGCCCAGGAATTTGGGGAGTCTATGAGATAGAAAACACCTCCCCCCAAAAAAAATGTTCTGTCACATTCCCAGCCCCCGGGGCTCAGACAG-GTACACCGAGTCCCCCAGTCTCAGATACATACCATGGGAGCAAATGAAGCCTAAGAACCCATCCTGTGTGCAAGGAGCTGAGGCCTCTAAG----TACCGCCATTAGCACAG--------TACTGCC------ACCAACGCAG----------------------GTCAGCACCAT-------------------GGTTCTCCCCCTTTT---------------------------------TAGCTGTG-----------------------------ACAGGATTCAGGGC-----------------------GCATGGGTGAC---------------------ACCCAGCAAACCACACTGTTAAAGTCT------------TCCTTGT----CCCCCAAACCAGACCTCCCAATTTTGTTCCTCGTAAttgtttttgaggcatactctaatgtagcccaggctagcctcaaa---ctccctacccagc--tgaggatgg--cagtgaactcctcctgctcttc--------cagcctctacct---tccaaggctagacatacagtaaagccctgccaccgtg-tcacgttatgaggtgctgtaggttgaatctcgggctccATCT------------------------CCAGCCCTCC--------------ACTCCTGATTTTCAATCCTC----CCACCTCCAGTCCCACCTCAGTGTTAATTGGGAAATGAGAGCTATAAG------------CAGTTCCAGGGTAGGGCT------AAAGTCCATCTTTCCCGCTACTCCTCCATACTGGGGCTCTACATAGGTACCAACGGGGATGCAGAAACC-------ACGGATGTGCCAAAGAGCTTGCAATGTCTTTTTTTTTTTTAATGGCCAAGATTTCATCCACTCCCCAAGTCATTCTGGGGAGTTGAAGTCTCCGTAAGCCTGAAGCTCAAAGAAAGGTAGTCTCTACTGCACTGCAGTAGAGAGGCTCCAGTGAAAGATGGCGC---CCTCTGGGCCAAGCCAGCCTCTGCATGCTGCCCAAACCCCAGAGGTTTCCTTTTTACCTGCTGCCTTGGGTCCTCCCTGGAAGGACAGGACTGTGCTGAGCTTTAAGTGGTTTCTGCGGTTTTAAGGGGTGGGGAGGAAGGGAAAGAAGAGTTGGTGACTGCTCCCCATTTCCAAGCCGCCGCCACCAC--CCA--------CCTCCAGGTTGTTTGCCCCCTGCTTTGAGATTCCTGGGCCTGATAAGAGGACTGGGCACGTG--GGGTAGAGTGATTCTCTGATCCCTATCAGCCTCTTCCTTGCATAAGAATGTAtttgagtttgctagg
s HiC_scaffold_1 139417442 3406 - 233722169 cagagtgtggtggctcacacctgtaatcccagaatttggagg-ctgagacaggaggattgttgag--ttcgagatcagcctgggctacaaagtgaactcaaggccagcctgaactgcatagtgaaaccctgtctcaaaaag---accaaaaaaaaaaaaaaaaaaaaaaaaaaaagacat--------------------tagttCTT----------GTTGCCTCAGAGGATCGAGGAGC-----------ATTTGAATAACCTG-----------------GTATCAGAAATCAGAAATCCTGGAAGAGTGTTA----------------------AACATGCTGGGGCCTGGTCTCTGTCCCCAAGTAATGTTA-----CTTCCAGAGGCCAGGGCTAGGTAA--GTCCTAGGTTC-----ATCCATCCGGACCCCACACCTTCAAGGACCCCTTTGATCGCAGAGTCACCCCAATAAGAACTTGATAACAGTGGCCAACACAAACCACACTCCCTGGATAAGTCCTTGGGGCTGCACAGGGGACATTAGCCCTTTCTTCCCTCCTGACCTCTTACACCTGTATCTGTCCAGAAGACAAATGAAA----------------GTGAGTTAGATGT---CAGCCTAA-CACACAATGCCCTTTAGCCAC-Cctgcctcctcttccct--ctctcacACCTGTGCTGCCTCAGAGGGCCAT---------TTGGAGCCAAGAATCAGA--------------------------------------------------------------------------------------------------------------------------------------------------TAGCATTTGGGTACCTGTGA--------------------------CTGAGATAGATG----TCCCAGGGATGGAAAGCTGGGCATGAAGAGTGCCCCAAAAGACTCCCCTGAGCAGGAGGAGGAgtggaaaa-----tgaataaaactgtaGGTCAAATTATGTTTATCTCCTGCCTGAAAATCCCTGACGTCAGCAGTGACCTTCTGCTTTCTACCTTCACATTCTGAGGAACTGATTCCTTTTGGCTCAGGCCAGGcatggaggaaggagggagggag------------------------cacTTCCTCTCTTACCCTTGGGTCTTTTATTCACTTCCC-------------------TATAAAACCT-------------CAGGACCTTAGCACAAGCAACTCTAAACA-----------------------------------ACACACTCACACAATTCATATGGCTC---CTCAGTTTTCTCCAGTTAGGTCCCTACCACTGGGCTCAAGGCCAGGGAGATTTTGCTCCAGATGTCCACTAGGTGGTAGCATTGACCAAAAAAACTACCATAAGCCTGACAGTTACACAGAGATTCCTGGGTAAGAACTGTTCTTGCCATTTATCAGGGTATTTGTTCCTCCCTGCAACCCCCATAAGGGTGCAAACACTACTGTTACCCATTGTGACCTTGGGCCT--AACAAAGAGTAGAATGTGAACCTAGAGAATCTGGCTCTAGG-------------GTCTGA-------------ATTCCTA---ATTCCCT-------------CTAACAC-CACAACTGCCAACTGCTGCCCCTCCCTTCT-----------CTGAAAGGGTCCTTGTCCCTCAAGATGACAGCTCTCCAGTCATTTCACAGCC-AGCTATTTGAACTTGCGCGTATGAATTCTGGGAAGTCCATTCCTAAGTCTAGCTCTAGCC---CTATCC----CTGTACTGTGTTTCTACTTCAGCCCCCAAATCCTCCTACAACAACCCTTAGTGAGGAACCCGGTTCAAAAGCGTTTGGA-----------AAACAACTTTACATTCCATAATAGATACTT--AGGAAT-----GTTCTATGAGGTGtcagcaa----------------tcaaaacaaactaagGGATCAGACAAGCTACAAAATAACCAGTGAAAATAACAAT-----GTTAGCAGGTGata---tgaatagaaaaataaagctggaagagaacagaaaaaaggggggtCAGATAGAGAAAGGGAAGATTAGAGGAATGGAAAAGCAGGAGGGAGGgaataaaacacttttttttagggtttttttttttgagacagaatttttctACATACTCCAGATTGGCCTTTAACTCAccatgtagtcctggctggcaCTGAATttgtgtgattctcctgcctcaatcttccaagtgctggaataacaggcacatgccaccacacctgaataaaatgcttttttaaaccACAGTACTTTGTACTGTACCAGGTCCTGTATTTTACCCTGCAGCTTTATCTCAGTCATCATAATCACTCAGTAAAGTAGGATTATTCCCATTTTACCCAGGAGGAAATAAACCAGAGAGGTTAAATAAACTTGCTTGAGGATCAGCCTTAGCTGCAGGGCAGGTTTCTGA--------CTGTACCCAAacacccagc-----cccacccccaagACTCAGGGAGGCT-----------------------------GAAAGTTCACTGGCATCCACAGCCCTCTCGGTT--GGCAGAATGCACAAAGTCCATCTGCTGCCTATGGTCAGCA--GAGGCAAGT----CCTGAGGACCCCTCCTGGGTGCAAACTGCT-CGGACTCTAAAATCCTACCCACACAAGTCCAGATAGTTGTTACTGCCCCTTTTACTGAAGTGGCCATATTACCAGTTTTTGGAGTGTTAGAATCTCCTTCTGGaagtggtttctaggttctttctgtcctgaacaaagaactggACAAGACAAGCACAAATGGCAGcaatgttttattaaatatagaagAACCAGACTGCACagagtttgggccaagtaaaaggaaaggacaggaaaggaagggtGCCCTACAGCGTGAGGGCGGGCCAACACACCAGAACAAACTGTCAAAAACTCAGTGTGGCCTGTCCTTGTTGTATCCCCACTCCTCAGGCTCCCATCAGG----------------TCAAGGC-CACCCTATGGAAAACCTGATGGAATTCAAAAGGTTcagtgcagggctttgggaattATTCTGTGCATGAATCCTAGATTTTGTAATTAGCAGCTCACACCTTCATCCCCAGCCAG---TTCCGCTATGCCCTAATCTCTTGTTTGGGTAACGGAGGACTGTAAATTACCTCAGGGATCACAGCTAATACACAGCAGACCACATTCTTACCAGTCCTTCTGCTCCAAAATTAGAGTCCTACTTTCCAACCCTCCTTGCTGTCTGTAAGTCCATGTGAACTTTGAT-----GATGAGAGGTACCAGGGTCATCAaggaaagttcaaggccagagctAGGATCAAAGTCCA-----CCCACAATGACCTTGTGATAGGA------ATGGGCAGGGCTGGAGGGATAAAATTCCTAGGTTACATATGT-TTAGAGAGCATTCATTGTTCCTTTTTTT----ATGGCCAAG--------CACTAGAGAGGTCA------GGAGCT---------------CCTAGGACCAAAGAAAGGTAGTCCCTAGT-CCCTGGATT----AGGCTCCAA-AAGAGATGTCCTCCACCCCTGGG--------------GCAGGCTGCTCACGCTC-----ATGTATTTTCCACCTTTGCCCCCAGGCCCTCCCTAGAAGGGCAGGTTTGTGCAGAGCCTTAAGTGGTTTCTGTGGTTT--AGGGGtgtggaggaagggaaagagaagttgGTG-CTGCT-CCCAGTTCcgagccaccaccaccaccaccatgtcCCACCCTTCAGGCTGTTTGCCCCTTGCTTTGAGATTCTCCAAGCTGATAAGGGAACTGGGCACGTGGAGGGTGAAATGATGCTCTGATTCCTATCAGCCTCTTCCTTGCATAAGAATGTattagagggggctggg

a score=185070
s chr3            94371557  9343 + 160039680 [encoded data, 10827 characters]
s HiC_scaffold_1 139421307 10038 - 233722169 [encoded data, 10827 characters]

a score=51644
s chr3            94382257 3374 + 160039680 TTCAGGCAGTGTCTACATCTTTTGTTATTCTTCCTTCTTACTCAGTATCAGCTGGAAAGCAGGAAAAG----AGGAACAGAAGAGAGCCCTAGCATGCCTCTGCCTAA-ACCATTCCTTCCCTGAAAC----------TGGGGCTTCTGGAGTGAGACCCTCCTGGGCTGTAGCCCCTC-TCCGTTCCAACCACTTCCTCTCTGTGGCTA--GGCACCTGGTCAGGACCCAGGGCCCAGCTCTGGATATAGTTAAAATGCACTATCAATGAATCTTGCAGCTGTGAGCAGCGTGAGATTAGAGGAGGTTGGGGGCAGAAGTGGCTTGCTTCTACCGTATTTCTCCTCCCTGGAGGCTCTAAGGT---GCTCCTTGAAGAGCGTTTCAGGG--CAGAAGCAATCCAAAGGAGAGTCACTTTTGCTTTCCAGGGCTGCAACATAATTATAGTTTTTACATCACATCCG----TAGGGAAGATGCAGAGATAAACTCAGTGAGCTGAC----CTGTATAAGGAATGGGTTTGGGAAGTGATTATCAAACCTACCTTGACATCTTGGGAGGAGCAGCCTGGCACAAAAGCAGCCAGAGACTAAAATGTTTTTATG--CCAAGCATAGTCTGAAGGCAAAGAATCACTGTCCTGGAGTGCATTATAAGTGTGGACTTTCCGAG-CCCTGCCTTGGGCTGCTTGAACAAAGATCTTCATGGTGGTGGTGGtgttgttgttgttgttgttgttgttgttgttgttgttgttttgtggtactgggccatggaactcagaacatgtgtatactaggcaagccctccactactgagctacTGCTGTAGCTATATTTTTAACAAGACCAGGTCC--TATATTTTAACAAGACCTCCAGGTTCTCTTTTTTTGAAAGACAAAAGACTAGAGTTGC---TAGCTGGGTGCCTCCTGCACCAGGCATTTCTGCTTTTGTAAGAATAAAGATAGAGGGGTTTTTTTTTTTTTTTTTCCTTCTTTCAGtttttagagacagagtttct--ctgtatagc--cctggctgtc----------ctgg----------aactcactttgtagaccaggctggcctcgaactc--agaaatcctcctgcctctgcctcccgagtgctgggattaaaggtgtatgc-----caccactgcccggc---tGG----------ttgtcatttttaaaacagggtctcaaactatacgccaggctgg-------cctgaaactcatg-----gcaacccacctgccccagct------ttctgaa----------------------------------------tgttgaga------------------------------------------------------------------------ttTCCCAG--------------CTTGA--------------------------------------------GGGTTTTCTTTG-----------TGATACCCTTC-------------AGGAGAAAGGCACAATGAGG------------------GAACAGTAAGACACAAAAATCCTAAGAAAGAAGCAGTTTGGCTGCTGTGGGAGCCATGGGGCTTGGGCTGACCTGAAGGCTCCTGACCTTTGATTGGCTCCAGTTCCTGGCACCGTTGGGCCCTGAGATGGTAAGTTCCTGGCAGACTAGGCTCCCAGGCAACAGTTTGAGTAATCCTGTGATTACTCAGCACCCCCTCCCCAAGCGGGGTTCCCATCACCTGCTGTT----------CAGGGTCTGAGTCTTGAAGCTTTGCTGTGGAAGATGTTTCTCCGCTCCTCTCATGCTGACTTCCCTACCAGCCCTTCCCCTCCTTCCTTCCCCAAGTGTCTGTCTCTCTCTGACTTTGTTTGTCTGTCTCTGTTTGTCTCTATCTTCCCACcacacacacacacacacacacacacacacacacacacacacacacCCCACTGGTACTTTCTTTGATATTTAAGTGTTTAGGGTGGATGGTACTGAACAGGGTGAAGGTGTAGGGGACGGAGAACTAG-AGAAAGTCAAGAAGTTTGGTCATGTGGAGGATTGGGCACAGGACCAGAACA--AGCAGGGGTTTCCCACGATTTCAGTTGTCTCTCCTTTGCTATAACT----ATTTTCCCCCAGTCCTGAATCTCTCAGTCTCCC---------------------------------------CGTTTCTTGTGCTTGT----------------------------CTCATTGTAGACCAC------------------------------------------------------------------------------------------------------TGCTTTGG-----ATTGGCAAT-----------------------------------------------------------------------------------------------------GGGAAGATAGAAGAGGGGCTACGCTGGTAGCTAGGGTCCAGGGCTCCCATAGCCCCCAAACTCCCAGTTCTTGACTGGTCATATCTCCTATGAGATGGCAGGGTCTTACTTACACTGTGGTAAGGTTCCT-GGGTTAGGACCAGCAATGGGTCAGGTATGGGGCAGGAGGTATGACTGGGGTCATCCATGCGGTCAGTGTACACACGCACACGGATGTGGCTCTTGGAGAAGGGAAGAGGTAGGGAGGCCTGTGGTTGCCTGCTAGGCCAGGGCCTGAGTTCCCACCGTGGCTTGGCCTAATCTCCCTACCACTTGCTTTTCTGGGTGACCTATGTTGGTT--TCCCCCTCTCTGGTCTTAGGGCCACTGAAGAGTGATATACCACAGAGTACAGAGGAGAAGGTGTTGGGTAGGAGCAAAGGCTGT-GGACCCAAGTGTTACTGCCAGGCTGCCATTCCCATGGA----TTTGCTTTATCTCAGACAGTAATACCCTGC-CCTGTAGTGCTCTGCCTCTCCACGGTG------------CTCCCTGTACTCTCTTGAATCATGCCATGTGACCTACACCACAGGCAATGTTGCTTTCACCGTCA-TTTGCTGCCAAGGGAACTGAGGTTGA---------GAGTGACTGGAAGTGTGTGTGCCCCCACATTTTCCACCTCTCTTCCAGGCACTCAGGTCCCCTCCTGTTCTCTCTTCCCCACCAAGCATTTAACCCAGCTTGTAACTTACAGGAAGCCATTGAACAGAGCATTTGATACCT--------GGTGGCTGGAGCTTACTGTGCAGTTGGCAGGTAGAAAGTATGTCTGGAGGTAGGACAAAGAACTGAGTTTTAATGGAAGGATTTCAGGCACTCATATGGCCAATCCCTTAAA-GAGACAGCTACTTAATCTGACCCAGCTCTGGGCTGGCTTGAGAAGGTCATAGTTTAAGGATGATGGAA--TACTTTGGGAAGTGATGGGCAAATCATGGTCTAACCATTCCATATCAGCAGACCTATGTGTGGTTATAGAttttggacatctcacatagccctggttagccttgaactcatgatgtagccaaggacaatatagaactcttgattgtcttgcttctacctcttaaatgctggaattacagAGACGTAGCAGCTCTCATATGACAGATGCTAGGCACAGGCTGGACATGAGATCCTATGTGAGTTTGCTCTCCATGAGGCACTTCCTCTGTCCCTAGGGTGGGAGACAGGTCACAGATGAGATGGGACTGTTACTCTAGATCTCTTTTCTAGCCTGCTTCAACTCTCGACTATCCACTC---AGGAAAATCCAGAAGTCAGTCAGTGATTGGGAGAAGAGCCAGCTCCCCCACTCCCACCCTACCCCTTCGCCCCCTAGTCTTTGGACTTGTTGATGAAAAGATCTGGGGTGGCTGGAACCCCAAGCTTTACCTAGCTGC
s HiC_scaffold_1 139432074 3528 - 233722169 TTCAGTCAACGCCTGGGTCT---GTCATTACTTCTCCTCACTCAGTATCTATTGGACAGCAGGGAGAGCTTCAGGAGGGGATGCGGACCTCAGGGT-CCTCTGCCTGATGGCTCTGCACCCATGACTCAGGGTGGTTTTAGGGTTTGAGGAGCAAGATCCCCCTGCGTTGTAGCCCCTCCTCTGCTCCTACCACTTCCTCTCTGTGGCCGAGGGCACCTGGACAGGGCCCAGGGCGAGGCTCTGGATACTTTAGAAGCGCACTATCAATGAATCTCACAGCTGCAAG-AGGGTGAGGTGAGAGG---CTAGCGGCAGGAAAGCTTTGTCTCTACCGTATTTCTCCTCATAGGAGGTTCCAGGACAAGGCTCAGT-AGGAGGACTTCCGTAATCTGAAGCAATCCAGAGGAAATTTCTTTTTGT-----AGGATTGCATCAAACTGAAGATTTAGAGATCACACCAGATGTTAGGGAAAAGACAAGAATGAGCCAGGCAAACTGAGTATGCAGTTTAGTGCAGGAGCATGTG-------------------CTTAGTGTAT----AGAAGGCGTTAGGTTCAAAGCCAGGCA-ATACTGatacactcttgtaatcccagcac--tctgcagg---aggatctcaagc-tcaagcccagcctgagca---atttagtaagatcctgcctcaaaatggaaaaataaaaag---------------ggagctG---------------------------------------AGAActcaaggatacagctcagtattTAGGGCctcagttcaatcccctgtaTGGGGAGATAAGG-GGAAACTGAGCTCAGAAAGAGATCAACACCACCCCATGTGAAGAA------CAGACTGGCTT----------ACACAGGCAGAGAAttgcgttttgttttgtttcttttttttc------tttttttttttt-------------------tttttttttttttttttttttttttgaggtaccagggattgaactcacaacctcatagttgccaggcaggcacttatgctgctgagctaaatcccaactcactgtgtagcccaggattactccaaactctcagtgatcctcctgcctcagtctcctaaatgctggggttataggtgtgtgctgctTCACTTCGGCCTAGCCCTTGGGTCCAAATTCTTGCTATCACAAGTGTAGG----CTGACTACCAGTCAATTTAGGCATCACCTGGGAGCTCATGAAGATGTGACTCTCAGGCCTCACCTCAGATTTCCTGAAGAGGGATctgcgttttgttttgttttgttttgttttgcgttGTTGGGAATCCACAAGGCCTTGTGTGGACTGGGCAAATGCTGTCTTACTGTGCTACATCCCAGGCCCCTAGATCTACATTTTCTCAGGATCATCAAGTTACCTTGACCAAGATGAGGTTAGAGGCCTCTCATGAGTTGGGAACTAGCACTGGACTTCTTGTGGAGAGCAGAATTGGTAGCTTTCTCCAGTCAGCCTTGGGAGAGAGTTACAGGGAGGTCTGCAGTGAGAGACAAAGGCAAGTGAGGCACAGAGATTCTCCCAAGTGAG-GGCCTGGCCGCTGTGGGAGT------------GC-------ACAGCTCCTGACCTTTGCTTGGCTCTGGTTCCTGGCACCAGCAGGCCCTGAGATGTTAAGTTCCTGGCAGATGAGGCTCCTAGGCAACAGTTTGAGTAATCCTGTGATTACTCAGCTCCTCCTCCCCAAGCGGGGTTCCCAGCACCTGCGTTCACCCAGACTGCAGGGT--GAGTCT-GAAGGGAAGGGATCTAAGGTGTTTCTCAGCTCCTCTC----------------CAGTCCCCACCCCCACTTCTCCAGCAGGC----------CCCTCACCTTTCTTCTCAGCCCC-------------CCTTCCCCAAGGCACACACTCACAGGCAG-----------------------------TGGT--TCTCTTTGAG--------GTTTGGGGTGAATGACATTGAAGGGGGTGCAGGTGGTAGGGAAGGAGGG--AGCAGGAGGACAAGTAGCCTGAGAGTGCTGGGGGTAGGGGAAAAGGCCAAGACACAGGCATGGGTCGTCC--TGTTTCTGTGTCCTCTCCACTTCTAGGTCTGCACATTTTCTCCCATCCCAG---CTCTCAGTCTCTCTAGCTCAGAGGCTGAGCAGTGATGGCTAAATTTTAAggcctttttttgtgtgtgtgtgtgtgtgtgtgttttcgagacagggtctcgctgtgcagcacaagctggcctcaaactcatgttaGTCCTccaccctcagcctcccaagtgctggaactacagacaTGCACCAACTTTTAGAGATTATAAGGTTATAAACAGCCCGCTGTGGCTGCTATAGGCCACATGCCTATAGGTTCACCACCGCAGGGCTACAGGGTCTACTCTCAGAATCACTGACTCTGCGTGCCTACCTCACTCTGTGTGCCTGCCTAGAACCATGGTTGGGGACAGTGGAAGAGGAGTTGGCCAGGTGGCTGGGATCTGAGGCTCCAGTATCCCTGAAAG--ACAGGTATT---TGTGCAGGGGTCCTA-GGTAGGCTAGAGTCATGGCGATACTGTGGTTCGGTTCCTAGGGCCAGGACCAGCAGTGGGCCAGGCATAGGGCGGGAGCTGTGTCTGGGGTCACCCGTGTGGTCAATGCACACACGCACGCGGATGTGGCTCTTGGAGAAGGGAAGAGGCAGGGAGGCCTGTGGTTGACTGCTGGGCCAGAGCCCGGGTTCCCATTGTGGCTTGGCCTAATCTCTCTCCTGCTTGCTTTTTTGGGTGACCCATGTTGGTTTCTCCCCCTCTCTGGTCTTAGGGCCACTAAAGAGAAAGATACCAC--AGTATAGGGGGGTGGGTGCCTGGCAAGAGCAGAATCCTTGGGGCCCATGTGCTCGTCCCAGCCTACTATGCCCACAGACTCCTCTGCTATGCCTCGGTCAGCAGAAACTGGTACACGTAGTACCCTTCC-CGGCACGTTGATGTCACTTAACCACTCTGTACTACCTGCAGTCACCCCTCAAG----------CAGGCAATATTATTTTTACCGCCACCTCATTGCCAAGGGAACGAGGCCTGGAAAGAACGTAAGTGACTAGAAGTGCAAGGGCCCCTACACTTTGCACCCCTCTTCCAGGTATCCAA--------------TCTCTTCGACAC--------------------TTCCTT--AGAAAGAATGTGAAAAGCTTGCTTGGCATCTTTTCCTGAGGTGACCACAGTTTACTGGGTGGGTGTTGGACAGCAACAGTGGCTGTGCATGGGGGAAGGAAGAGAGTTCCAATGGGAGGATTTCAGACATGCATGTGCCCTGGCCCCAAAAGGAGATAGCTCTTTACTCTGACTCAGCTCAAGACTGGCCAGAGAGGATGATGGTTTGAAGATGGTGGAAACAAGATGTGGGAGCAGTAGGCAAGCCATGGCCT-CCCTCTCCA-----------------------------------------------CCTTGCTT---------------ATGTCAGCAGGG----------------GTCTGTC--------------------CTGGGGCTGTAGGGG------AGCTCCCA------------------------GGAC-----------TATGGATTTGCTCTTCAT-------CTCCTCTGCCCTTTTGGCAGGAGACCTGTCATAAATGAGAAGCAGCTTTGTCCCTTGGCCATTTTTTTGGCCTGC-TCTATCCCAGCCTACCCACTCCAAGGGGAAGTCAGCAGGTCAAT-AGTGGTGGAAAAGAGACCCAAAT--------------------------------ATCTTTGTA---AGTGCTGAAAACATCTGCAGTAGCC--AACCCCAAGCTGTGCCTGGCTGC

a score=128070
s chr3            94386279 3665 + 160039680 gaactgttcaagagagtggggttgtagacctggcactcaaagaaactagctgtgtgagcctgtgct-------aggtagttaggtcttcatctgtgagaagaacaggtggatggagtgtgctttaatctcagccagttttaacagtcGTGTCCTGTGCTCATACACATAGACCCAGATGCCTTTGTACATCCTCTTACACACTTACACAGAGCAT-------TGCCTCGTCTTGGTTCTGGGGTCATCAGTCTAGAAA-TCTTATT-------TGGGCTTTAAGACAATCAGCAAAGTTGG---GTTGAGCCCT---TCTCTAGATTTCAT---CTGTTTCTTTCTAGTCTCTCTGTACCTGCTGTGT-------------TGGTTCCCCTCAGTTCCTGT--CCCTGTGT--AGCCTTCACTTTCCT-CCAAGAGTGACTAACATCTCTGTCTAG---------------TGCTCAGTG--------------GCTGTGCCCCATACTCTGTTCTGGGAGCCAAACTTCAATGGGGGGAAGGAGACAAAATAGAAGCCCCCTGGGCGGGAAGCAGGTGTTACGAAGCAGTAAGGCCTCCTCTGGCCCTATACAGGATGAGAGGAGGGCA-CTGAAGATGTTCAACTTGAAGGACTGAGCAGGTGGCCTCTTTGCAGCTGCTCTCTGT--CTCCATAAAAGCTGATACAACTCCCAGCTGC-------TTTGTGAACAAAACACAGCCTCCTCAGACCCTATGCTGAGAATCATTTAC-ACTTTACTTCCCCTTCCATAATGCA-------AGAGGGCGTGTTGGAGCTCACTGAAGAAGTGGGGGGAGCAC-CATACACCTGCGTCTGCAGCCCAGGCTCATGGTAGTGAAATCCAGAAAAAAACATTATGGGCTAGCTT----CTCTTTCTCTCTTCCAGCACAAATTGAAGTGATCCCTTGCAAGATCTGTGGGGACAAGTCATCTGGGATCCACTACGGGGTTATCACCTGTGAGGGGTGCAAGGTGAGTTGTA----------------------CATATTTGTCTGCATACATGCACTTGGCTGTTTCAGCGGTCTCCCCAGGGTCAGGAACAGGAGGG------------------AGGAG-----------------GAGGACCTAATCTCGATGTAGGAATGTGATCACAGGGTCCATCACAATTATACAG----TGGAGGTTCGGGGACT---------TTGGTGGATGTAGAAATTCTTGAGACCAGTGCACATGAATTGGAGGTCCCTG-GGACCACCTCAAACTCCGAGAGGGTGGGATAAGCAGTTTCTGTTTCC------------------CAGGGCTTCTTCCGCCGCAGCCAGCAGTGTAATGTGGCCTACTCCTGCACGCGTCAGCAGAACTGCCCCATTGACCGAACCAGCCGCAACCGATGCCAGCATTGCCGCCTGCAGAAGTGCCTGGCTCTGGGCATGTCCCGAGATGGTGAGAATGTGGGGGCAGCCCCCAAGAGTCCCTGTACTCTCCAGAGAC---ATCCTGGCTCTTGCCAGA-----GTTGGCTTGCAAAAACAGCCTGTCAGGGGCCTCTTTCTGTTC----TTCTACCCACAGCCCTTTGTCCTGTCTTTTTGAGGGTCCTCAAGGCTCTTCAGCCTCTACTCC--AGGCTCTGCTCCAGAAAACCTTT--ACCAGCATCATCTTAGTACTCTTGTCCCTTCTTCCTCTA-ATGAGTTCTCTTCATTCTTCTTTCTCCTGGCCTAGTTCCTATCCAGTTCCCACACTGTTACCTCCTGCCTTGTTTA---GCTCCATCTCCCTCCTGAGTAACTA------TCCTTAGGCATAGGATTGTGGCAAGGAACACCGTCTGGGTTGGCTT-GAGAATGACCCAGAAGGTGGGGGATCGAGTGTG--GTGTTCCTCGAGCCGTATccacc-tcctcacccacc--tcctcacccaccGTCTTCACCACAGGAGGAGCCCTGGGTGGAGTGGGGGGCATGAGGTGAGGAAGACCCAGAAGGAGCCTGTCAGCACTTTTCAGTGCTCAAAATAACAAAGCCAAAGCGAAAGGAAACATGCAGGGGTGCAAAGGGGCAGGCGGGGCGAAGGGCTGTGCCCCCACACCTGGGAGGGGTTGGGGGAGTGAAAAGGCAGGAAAGAGAGAGCAGAAGAGGATGTTCAGAAGCAAGCCACCAGAGCCTGGGTTGGGCTGTGGTGAGTATCTAGGTCACCAGGGAGCCTGCAGGCCTGACCACAGGGAAACCTGTGTTCGCAGCCCTTCTCTTCCTCCAGCCCTCCCAGACAGGCAAGCTGACCCCAATACAGCCTGAGGCCCCTTACTCAACCCCCACCTCAGCCCTAGTCTCAGGAGACTCGACTCCCCGGCCCAAGCCCATTGCTTGAGTTCTGC-ACTATTAGCATCTAGTCTAGAGCTGAAAGCATTTTGCTGGGGAGATGGAAAT-GCTGGTGGAACCGATCCTAAAGAGAGCAGAGCCAGGCATGAAAGGAGCCTGGAGCCTAAGCTCCCCAAAA---------------GAAAGCTCATAGACAGAGCTGGGGAAATGGAGC------ATGGAGT--CAGATTCATGTGCCTGTTGCCCTGTCCTGTCTTGTCTTCTCTTACCT-----CCTGTACTGATTCCTGAACCTTCTTCAGCTGTCAAGTTTGGCCGAATGTCCAAGAAGCAGAGGGACAGTCTACATGCAGAAGTGCAGAAACAACTGCAACAGCAGCAGCA------ACAGGAACAAGTGGCCAAGACTCCTCCAGCTGGGAGCCGCGGAGCAGACACACTTACATACACTTTAGGGCTCTCAGATGGGCAGCTACCACTGGGCGCCTCACCTGACCTACCCGAGGCCTCTGCTTGTCCCCCTGGCCTCCTGAGAGCCTCAGGCTCTGGCCCACCATATTCCAATACCTTGGCCAAAACAGAGGTCCAGGGGGCCTCCTGCCACCTTGAGTATAGTCCAGAACGAGGCAAAGCTGAAGGCAGAGACAGCATCTATAGCACTGACGGCCAACTTACTCTTGGAAGATGTGGACTTCGTTTTGAGGAAACCAGGCATCCTGAACTTGGGGAACCAGAACAGGGTCCAGACAGCCACTGCATTCCCAGTTTCTGCAGTGCCCCAGAGGTACCATATGCCTCTCTGACAGACATAGGTGAGCATCTGGGAAGGGT-GGGGGCAGTGAAAATGAGACAAGAACTTCCTCCAGCACGGTGCCCATG-TAATCAAGCATTAGTCCTAAGGAAT-TAGGGATCCTGGACAAAAAGCCAAGGGAGGAGGCAGAGCAAGGGAGGCCAGGCAG-AGGGCCTCTTTATGAACTTTGGGGTGGGAACTGGCTGATATCTAGCTGTGACTTCATCTTCTGGCCCCAGAGTACCTGGTACAGAATGTCTGCAAGTCCTTCCGAGAGACATGCCAGCTGCGACTGGAGGACCTTCTACGGCAGCGCACCAACCTCTTTTCACGGGAGGAGGTGACCAGCTACCAGAGGAAGGTAAGGGCAAGAGACATGAGGGA-AGGGAGGGCA--CCACCACACGCGGGTGCGGTGCGGG-CGCGCGCGCGCGCACACACACACACACACTGGTAGAGC----CCAG-ATATGGCGTCTTTCACAGGAATGGGGGTAGCAATAGGGTATCACAGGCTGGCTAACAGGTGTGACTGTCTGTATCCAGGCAGCAAGATGACTA--TTTCTGTAGCTCCTGCTTATTGAGATTTCACCTAGTTAGCAACCTACATCCTCTTCCACCCAGACCTTGCCACACTGCCTTTCATCCTCCATCAGTAACTGATGCTAATCAGTATCTGAGGGTCATTTACTGGACACCCTTTC-CTGTCAGGCATT
s HiC_scaffold_1 139435693 3763 - 233722169 GGACAGTTCAGGGGAACAATGCAGCAGACCCAGCACTCACATAAGAGAGCTGTGTGATCTGACCCTCCCTTAGGGGTGCCTAGTCTTCCATCTCTCAAGTGACCTGGTGAAAGAGATCATCTCCAGCCTCAGCCAGGTT-GGTAGTCATGGTCTCTGCTCAAACAGTTGGACACAGATGCCCTCATACATTCTCTCACACACTGACGCATACAATATACAGTCAGCCCCTCTCCATGCTGGGGCTAAGGACCTCGGAACTCTGATTCTCTCCCTGGGCTCTAGGGCACCCAGAACAGCTAGTTAGTTGTTCCCTAGTCTCCTGGGTTCCATGGCCAGCTTCTTCCCAG-CTCTCTGAGCCCACTCTGTGCCTATCACCTCTTGG---CTCTCAGTCTCTGCTGCCCTTGGTTGAGCCTTCACTGTCTGGCTGAGGATGGCTAGAATCTCTGCCTGGCCTCCTGGGGTCTCCTGCCTGGTGCACCACATCTTCCTGCCATGCCCCATACTCTGCCCATGGGAGTGGAGACCTAGAGAGTGAGGGAGGCACAAAGGAAGCCCCA-AGGCGGGAAGCAGGTGT---AAAGCAGTGGG--------------TACCCAGTGCAGGAGGGGGGCAACGGGAGCTGTTCAACTTGAAGGGCTGAGCAGGTGGCCTCTCTGCAGCTGTTCTTTTTGACTCGGTAAA-GCTGGTGCAACACCAGGCTGCCCCCTCATCTATGAAACAAAAGTAAC-TCCTTGGAGCCTTTGCTGAGAAGGACTTGCCACTCCACTTCCTCTTCTATTTTACAGAGGGGGAGACAGCAAGATGGAGCTGGCTGGAGAAGTTGGAGACACATGCACTGTCTTGTATCTGCAGCC-AGATACTTGGTGGTAGAATGTGGAAAAG--CCTCCTGGGCTGACTTATTTCTCTTTGTTACTTCCAGCACAAATCGAAGTGATTCCTTGCAAAATCTGTGGAGACAAGTCATCTGGGATCCACTACGGGGTTATCACCTGTGAGGGGTGCAAGGTGAGTTGCAGGAATACATATGTGCAAATgcgcacacgtgtgtgcacacacacac------------gccatCTCTTCAGATTGGAGGACAAGGGGCCAGTGAGCTCCAGACAGCAAGAGAGCTTTTCAGATGGCGAGAGTCCCTTGTCTTAAACTGGGGAAGTGATTGCAGGACAAACTACAATGACCCAAGAAATGGAGGCCAGAAAACGGAGGGTGGGCTGGAGGATGTGGAAAAGCT-GAGGCT-----------------GGCCCTTGCAGACAGAGCCAGACCTGGCCTGGCCGGTAGAAGCTATCTCAGTCCCCGCAATCCCTGGGCCACCACAGGGTTTCTTCCGCCGGAGCCAGCAGTGTCATGTTGTCTACTCCTGCACTCGGCAGCAGAACTGCCCCATTGACCGCACCAGCCGCAACCGATGCCAGCACTGCCGCCTGCAAAAATGCCTGGCGTTGGGCATGTCCCGAGATGGTGAGGATAAGCGGA-----------ATTCCCTGCTGTCTCCTCAGCCTAAATCCTG--CTGTGCCAGACAAGGGCTGCCCTGCTAAAATGTCCTTCCAAAGGCCTCTCCCCATTCCTTGTTTTGCc---agccatttct----tttctttgagggTCACTA-------------TCGAGTCCTGAGGCTCTACCCCAACAAGCCTTTTCCCCAGGACC--CCCAACCCTCTCACTGCTTCTTCCTTGGGATGAATTCTC--CCACCGCCCAGCCTCTGACCCAGCTCCCGGCAAGTTCCATGGCT-TTCCATCCCGTTTCATCTCCCTGCTTCAGCTCCCTCCCTAGTCCCCACTCCCATCCTAAGACCCAG--CTGTGGTCCGGAG-AGGGACCAGATTGCCTGAGAGAACTACCCAGCAGGCAGGGAAGTGTGGGGGCTGTGTTCCTCATGCCTTATTCACCCTCCTCACCCACCCTTCCTCATTGTCGGTCCCC-CCACAGAATGAGC------TGGGGTGGGAGG----AGGTAATGGGGAGCCAGAAGGAGCCTGTCAGCACTTTTCAGTGCTCAAAATAACAAAGC------GAAAGGAAACATGCAGGGGTACAA-GGGACAGGCGGGGTGAGGGGCTGTGCCCCCACACCTGGGAGGGGGGTAGGGGGAGGAAAGGCAGGAAAGAGAGAGCAGAAGAGGATGTTCAGATGCAAGCCGC-GGAGCCTGGGTTGGGCTGTGGTGAGTATCTAGGTCACC-GGGAGCCTGCAGGCCTGACCACAGGGAGACCTGTGTTCTCAGCCCTTCTCTTCCTCCGGCCCTCCCAGACAGGCGTGTTGACCCCAATACAGCCCGAGGCCCCCTGACTGATGCCC--CCAAACCTCAGTCTTGGGAGGCCAGAAACCCCAGCCCAG--CCATGGCTGGAATTGTGCCACTATTCAAGGCTGGTTAGGAACTTAGATCAT---ACTCAGGAGACAGAAACAGCAGGCCTGACACATACTGAAGGGAAAAAGGTGACAGGTGGTTGGAGTCTTGGGCCTAAATTCCCAAAAGTTGGCTGGGGGTGGGAAGTGTCCTGGGGCAAAGATAGAGAATCCGGGCTCGGTACTGGAGCAGCAGGTTCAT---CCTGT-GCTGAGGCGTGTTTCTGCTAACCTTGCCCTGAACCCTGCTCTGCCTCCCAAAC-TCCTTCAGCTGTCAAGTTTGGCCGCATGTCCAAGAAACAGAGGGACAGCCTGCATGCAGAGGTGCAGAAGCAactacagcagcagcagcagctgcaacGGGAACAAGTGGTGAAGACCCCTCCAGCAGGGGGCCATGGAGCAGACACCCTCACCTGTACCTTGGGGCTCCCTGATGGGCAGCTGCCCCTGGGTTCCTCACCTGACCTGCCTGAGGCCTCTGCCTGTCCCCCTGGCCTCCTGAGAGCCTCGGGCTCTGGGCTGTCGTATGCTCACACCTCGGCCAAAACAGAGCTCAACGGGGTCCCCTATCACCTTGAGTACAGCCCTGAGCGGGGCAAGGCTGAGAGCGCAGAGGGTGCCTGTGGCACAGGCAGCCAGCTTACTCCTGGCAGATGTGGACTTCATTTTGAGGGATCCAGGCATCCTGGGCTCGGGGAACCAAGACAGGGCCTGGACAACTACTGCAGCCCCAGTTTCTACAGCACCCCAGAAACATCATATGCCTCCCTGACAGAGATTGGTGAGCAGCTGGGGAGGCCAAGGGGTGGTGAAGATGAGGGAGGGGTTCCCACTAGCTC----CCCATGTTGACTAAACACGATCCCCAAGAGTTGTAGAGATCC-AGACAAGGTGCTGTTGAAGGGGGCAAAATAAGGAGG--CAGGCAGCGGGGTATCCTTGTAAGGACCAGGGAAGGAGCTGCCTGAGACCAAGCAGTG--CTCCTCCTCTGGCCCCAGAGCACCTAGTACAGAATGTCTGCAAGTCCTACCGAGAGACGTGTCAGCTGCGGCTAGAGGACCTGCTACGGCAGCGCACCAACCTCTTCTCCCGGGAGGAGGTGACCAGCTACCAGAGGAAGGTAA--ACCAGGAGCATGTGCAACAGGGAGGACCCTCCACCAC-TGGGGGATCAGAGCAAGTTGTCTGCAGGGAGCTGTGTGCAGGGAGAGGGGCAGGGCGTATCCAGTGGATACTGACTCCCAAAAGTGTGTGTGCCTCTGTTAAGTATGCTttggtgtct-----gtgtgtatgtctaCAGCCTAACAGATGGGTGAAAACTTTCCCTTAGGCCTTGCCTATTAAGCTTTTTCCTGGCCTCCAACCT------------------GTCTTGGCTTACT-CTTTTCCTTCTCTATCAGT-TCCAACAATGATCAGAATCCCAGAGAAA--------ACACCTTTTCTCTaccatgcatt

a score=7166
s chr3            94387098 113 + 160039680 AGCTTCTCTTTCTCTCTTCCAGCACAAATTGAAGTGATCCCTTGCAAGATCTGTGGGGACAAGTCATCTGGGATCCACTACGGGGTTATCACCTGTGAGGGGTGCAAGGTGAG
s HiC_scaffold_1 178271204 113 - 233722169 AACGTCTGTTTTTCCCTTTCAGCACAAATTGAAGTGATACCATGCAAAATTTGTGGCGATAAATCCTCCGGGATCCACTACGGCGTCATCACGTGTGAAGGCTGCAAGGTAGG

a score=7674
s chr3            94387446 162 + 160039680 TTCTGTTTCCCAGGGCTTCTTCCGCCGCAGCCAGCAGTGTAATGTGGCCTACTCCTGCACGCGTCAGCAGAACTGCCCCATTGACCGAACCAGCCGCAACCGATGCCAGCATTGCCGCCTGCAGAAGTGCCTGGCTCTGGGCATGTCCCGAGATGGTGAGAA
s HiC_scaffold_1 178277926 162 - 233722169 tttttccttctaggGGTTCTTTAGGAGGAGTCAGCAGAACAATGCCTCTTACTCCTGCCCTAGGCAGAGAAACTGTTTGATTGACAGGACCAACCGAAACCGTTGCCAACACTGCCGCCTGCAGAAGTGTCTTGCCCTAGGGATGTCAAGAGATGGTAAGGA

a score=4113
s chr3           94387451 155 + 160039680 TTTCCCAGGGCTTCTTCCGCCGCAGCCAGCAGTGTAATGTGGCCTACTCCTGCACGCGTCAGCAGAACTGCCCCATTGACCGAACCAGCCGCAACCGATGCCAGCATTGCCGCCTGCAGAAGTGCCTGGCTCTGGGCATGTCCCGAGATGGTGAG
s HiC_scaffold_1 49527989 155 - 233722169 TCCCGCAGGGCTTCTTCAAGCGCACGGTGCAGAACAACAAGCACTACACGTGCACCGAGAGCCAGAGCTGCAAGATCGACAAGACGCAGCGCAAGCGCTGTCCCTTCTGCCGCTTCCAGAAGTGCCTGACGGTGGGGATGCGCCTGGAAGGTGGG

a score=5736
s chr3           94387457 159 + 160039680 AGGGCTTCTTCCGCCGCAGCCAGCAGTGTAATGTGGCCTACTCCTGCACGCGTCAGCA-GAACTGCCCCATTGACCGAACCAGC--CGCAACCGATGCCAGCATTGCCGCCTGCAGAAGTGCCTGGCTCTGGGCATGTCCCGAGATGGTGAGAATGTGGGGG
s HiC_scaffold_1 39889528 159 - 233722169 AGGGCTTCTTCAAGCGGACTGTGCGCAAGGACCTGACCTACACCTGC-CGTGACAACAAGGACTGTCTGATAGAC--AAGCGGCAGCGCAACCGCTGCCAGTATTGCCGCTACCAGAAGTGCCTGGCCATGGGCATGAAGCGGGAAGGTAGGAGTGtggggg

a score=5528
s chr3            94388714 127 + 160039680 TCTTACCTCCTGTACTGATTCCTGAACCTTCTTCAGCTGTCAAGTTTGGCCGAATGTCCAAGAAGCAGAGGGACAGTCTACATGCAGAAGTGCAGAAACAACTGCAACAGCAGCAGCAACAGGAACA
s HiC_scaffold_1 178286019 121 - 233722169 TCCCACGTTCTGTTTTTCTCCCCG------CCCCAGCTGTGAAGTTTGGAAGGATGTCCAAGAAGCAAAGGGACAGCCTGTACGCCGAGGTGCAGAAGCACCAGCAGCGACTGCAGgagcagaggca

a score=66889
s chr3            94391029 2573 + 160039680 CAGGGGCTTGGGGGGATCACAGGTCTCCTC------------------CTCTATCCCCGCAGTCAATGTGGGAGATGTGGGAGCGCTGTGCCCACCACCTCACTGAGGCCATTCAGTATGTGGTGGAGTTTGCCAAGCGGCTTTCAGGCTTCATGGAGCTCTGCCAGAATGACCAGATCATACTACTGAAAGCAGGTGCACAGGGATTGGCAGGCCCTGGGGGTGGGGGTGGAGCATGGGCTGGGGATGGAAGGACAGACCCAGGGCCAAGTGGAGGGAGGTGACTTAAGGAAATCAAGACACCGAGGGCTTAACAAGACACTGGCTCTGCTTAACATGGCCTACCCATCTT-TCTCCCCTTTATCCAGGAGCAATGGAAGTCGTCCTAGTCAGAATGTGCAGGGCCTACAATGCCAACAACCACACAGTCTTTTTTGAAGGCAAATACGGTGGTGTGGAGCTGTTTCGAGCCTTGGGTGA-GGGCAGTGGGAATTGAGAAAG-TCCTGATGCCAATCC-------------TATCACAAG----CCTCTCTACATGGTTGTTTGCCCC-CTGCTCTAAACACCCAAGAGTGGCATCCTTGGGGGAGAGGGGAGGCAGCTACCATGCTTACTCTCT-----TCATCTCCACTCCGGCAGGCTGCAGCGAGCTCATCAGCTCCATATTTGACTTTTCCCACTTCCTCAGCGCCCTGTGTTTTTCTGAGGATGAGATTGCCCTCTACACGGCCCTGGTTCTCATCAATGCCAGTGAGTGTGGCTGGGCATGGGAGCGGGCACTC---GTGGCTGAGACACAGCAGCTAA-TGGCGAACCTAGGCCTTTGGATGTGACTAA---TGGGAGACTGCTTGAAATAAGGAAATGAGCTCTATCCCGTGCTTCTGTAAAATATAACAGACTAAAGT----ATGCAGAGGAACCTTAAGACAGGGCGAGGATAGCATACAGTGGGGCAGTGGGAACATGGAGAAGGGAGGTTGGAAGGAAATGAGCCACTTCCCCAATAGATGTTAACCTACTAGCCAGTGTAGGGCAGTGACTCCTTTACAGtacacatgggaatcacctagggagctttaaggactaattgagtccctgggtcccacgtcc--agattttgacataactcatctaggctgcacccAAAATTTTAAGTCACCTCCAGATTGAGCCACTAAGACTGAGAATGGCCACTTGATGTGAGCTCATTTTGGGACAGAATGCCTATACTGGCAGTAGAGCTCTGGGTCCAAGCAGCTGAACGATAAATATTCAG-AGGACCTAGGGGAGTGGGCCTG-CTGCT---CTGGGTTGGTTAATGACCATG--CAAGCCTTCCAGCTCTACTAACATGA-----------------------------------------------CTTCAA---GCTAGA-------------AGCAAGACT-----TCTAGCAAAGG---------------------------------GAAAGGTAGC-----------TTAGGGGCTGAAAG--AGAGCCACTGAGTACGTTAGAGTC-----------------------------------CTTGG--TAAGAAGGTCACCTCT---CTGAGTCACTCCTGTAGGAAT-GAGGAAGCTCTCTTCTAACATT-TTACTTCCATGACAGAAATCTAGTGCCTGACATTGAATAAGCTACATGAAAGGC-AGGTTACCAGGGACAAGGTAGCTAAAAGTTAGTTAGGAGATTAAAAGTTAGTTAAGGCTTGTATGG-------TCATTAACCATCCCAGAGCAGCAGGCCCACTCCCCTAGGCCTTCTGAATATTTAT---CGTTCAGCTGCTTGGACCCAGAGCTCTAGTGCCAGTATAGGCATTCTGTCCCAAAATGAGCTCACATCAAGTGG--CCATTCTCAGTCTTAGAATGTCTCCCCACCCCTTTCATCTCTGCCCAGTTTCCCTAGTAGTTAGCTCGACAGGCCTAGAGTCATACAGTTTGCTGTAGTCAAACCAGTACACACATGTGCGCACACATGCATGGGGGTGGGGTGGGGagggacagagacacagagagacagaggcagaaagagacggagacagagattctcttcaaaaagatacatgacaccattttgttggtcacgactgtctttgttgtttccgtttcactctggtcccatcccatcccttccttcagaccgtcctgggctccaagAGAAGAGGAGAGTGGAACATCTGCAATACAATTTGGAACTGGCTTTCCATCATCATCTCTGCAAGACTCATCGACAAGGCCTCCTAGCCAAGGTAGGAGCAGTCCACAGGGTAGAAGAAACTAGGCCCACTGCCAGTTGTGTGACATCAGGGC--------------CAGGGTCTTCGGGTGCAGAGGAAGGAGTGCTGCAGTGCTGGGCTATGTCAGC--GTTTGCAGCAGCTGTGGGCCCTGCTG----GAGCATCTGTTTCCATGTACGAAGGGATGGAAAGTTAGTG----TGGAGTTAGAAGAGACCTCCAGGGAACAATTCAGTTTAATATAGCTGACACTTACCCAGCACCTGCTTATACAAGGAACTGTGGAAAGCTACAGAGATGCAGTTCTTGTCCCCACTAAGATATTCTAACCTCTTAAAAAGAGACTTGTGTACCTTCTAATATAATGCTAATATGGGGTAAAATATGTGATATTTTAACAGTGAGgttaacaaagtgctttcaatgatat---ctcttatcctaatggcaaaccagttaaaatagggcaggtgttagaatcttcctg
s HiC_scaffold_1 139441725 2498 - 233722169 CAGGGGCTTGGAAATATCGAAAGGCCCTACAGAGAGCTACAGAGGAacctcttcccctgcagtctatGTGGGAGATGTGGGAGCGCTGTGCCCACCACCTCACCGAGGCCATTCAGTACGTGGTGGAGTTTGCCAAGCGGCTTTCAGGCTTCATGGAGCTCTGCCAGAATGACCAGATTGTCCTAATAAAAGCAGGTG-----------------CCTGGGGCAGGGGAGAGGATGCGGGTTGGGGGCCAA---------------CCAAATTCAGGGAGGAGGT-------------GACACTGAGAGACGCAGAGAGTCCTGGCTTTGCTTGACACTGTCTGTATGTTTTCTCTGCCCCCTCTACAGGAGCAATGGAGGTTGTGCTGGTTAGGATGTGCCGCGCCTACAATGCTGACAACCACACAGTcttttttgaaggcaaatacggTGGCGTGGAGCTGTTTCGAGCCTTGGGTGAGGGGCAGGGGGCAACAAGAGAGATTCTGATGCCAGCCCATGTGAAGCTTCATGCCGCAGGGTCCCCTCTTTGCAGAGCCAAGTGCCCCTCTGATCCAGACGCCAGAGGGCAGTGTCGCTGGGTACCATGG------ACTCCCGGCCTTGCTCACTCTAAGTCATTTCCACCCCACCAGGCTGCAGCGAGCTCATCGGCTCCATCTTTGACTTCTCCCACTCCCTAAGTGCCTTGCACTTTTCTGAGGATGAGATCGCCCTCTACACAGCCCTTGTTCTCATCAATGCCAGTGAGTGTTGCGAGGCTTGGGGACAGACCTTTCAAGTGGCAGGGGCACAGCAACAGATTGAGGAGTCTAGGCTCTTGGATGTGGTTCAGTCTGGGAGAGTGCTACAAACAGCAGAATGAGCCCCATTTAATATTGctgtaaaataaaaggaattaaaatgatgATTCAGAAGCACCCCGGAGCAGGGCAAGAACAGC-------------------------AGAAGGCGGGCTG------------------------TAGATGTGAGGAGACTTG--AGTGT----CAGTGATTTCTTGGGAATGCACTTTGGAACCACCTGAGGAGCCTTAAAAACTA--TTGCTGCTTGGGTCCCTACTCCAGAGATTCTGGTGTAATGGATC-AGGATGCA-CCAGAATTTACAGCAACCACC----CAGGCCACC---TTTGAGAATCACTGCCCTGAGTGAGCTCATTTTGAGGTGACTTGCCTGCAGTGACAATCT-GCCCTGG----AATGGGCTGGGC-----AGAGCCAGCAGAACCCAAGGAAGTGGGCCTGCCTGCTAACCTGAATTTGTAGATAAGCAGAATCAGTCTTCTGGGCTTTAACAATAAGAGACCTAAATGTGCCACTGGATCTGGAAATAAAGACTTTAAAGATGAccttcaaggggctgggggtttagttctgTGGCATAACTGTCTGTTTAGCaaatgtgagatcatgagttcaatccccatcacaaaaaaaaaaggtggccTTCAAATATTTTAGGGAATCAAGGCAAAAATTAGTTTGGGTGTTTAAGTTGGCCAGACTGCTGCAGAAGCCCCAGAAAGGGCCTGCCTGGCTTCAGGAGGCCATTTCTACCTGGAGCCATTCTCCTAAGAGTAGGGGAAACTTTCTTCCAACCCCATGGAAGACATGACAGAATCCCAGTTCCTAGCATCAAAAGGGTTATGTGAAGCACAAGGTTACCAGGGAGGAGGTAGCTTGG----TGTTAAGAGGTTAGAAGCTGCT----GTTCCTTTCGTTTCTCCTCAATTTCCTTTATAGA-CAGCTGGCCAAACCCAAgagg---ttcacacacacacacactctcaacTG---GAA---AGGCCTCT----TCAGCACAGGT------CCCCAGAAGG-------ATCAATTGTcccccttttcagtttt----tctttcctctctctctctctctctctctctctctctctctctctctctc----------------------------------------------------------------------------------------------------------------------------------tctcttt-------------------ttttactgGAAATGAGTGTCCTTGTTCCT--CTTCTCACTCTGG-----TCCCATCTCCTCCTTCAGACCGGCCAGGGCtccaggaaaaaaggaaagtagaACAGCTGCAGTACAGCCTGGAGCTGGCCTTTCATCATCATCTCTGCAAGACTCACCGCCAAGACATCCTGGCAAAGGTAGGAGCGGCCC-TGTGGTAGGA-CAGCCAGGCCCCATGCCAGGTCTGTGACATCAGGGCTCGTGATGCTGGGACCAGGGCTCTGGGTGCA-------GAGTGTTGGAGGGCTGCAGGATGTCAGTGAGGTGGCACTAGCAATGGGAACTGTGGGGATGAGCAGCTCCTTTCGTGTGCATAGAGATGGAAAGTTAGAGAGCCTGGAATTGGAAGGCACCCCTGGGGAACAATTCAGTTTAATATAGCCAACACTTAGCCAGCACCTGCCTATACAAGGCACTGTGGAAAGATACAGAAACTCA-TTTTTGCCACCACCTACCGATTTTAATCTGGTACAAACAGTCTCATGTACCTTGTGGTATAACTTT-ATATTAAGTGTGATCTGTGCTATTATAATAATGTGATTAACAAAGTGCTTTCACTGCTGTATACTCTTGTCCTCATGGCACCCCAGCC--AATAGAATAAATGGTAAAATTTCCCTG

a score=7959
s chr3            94391058 159 + 160039680 CCTCTATCCCCGCAGTCAATGTGGGAGATGTGGGAGCGCTGTGCCCACCACCTCACTGAGGCCATTCAGTATGTGGTGGAGTTTGCCAAGCGGCTTTCAGGCTTCATGGAGCTCTGCCAGAATGACCAGATCATACTACTGAAAGCAGGTGCACAGGGA
s HiC_scaffold_1 178300314 158 - 233722169 CCTCT-TTCCTACAGTCCAGGGAAGCACTTTGGCAGCAGTGCGCCATCCAGATCACACACGCCATCCAGTACGTGGTGGAGTTCGCCAAGCGGATCACAGGCTTCATGGAGCTCTGTCAGAACGACCAGATCCTACTTTTGAAGTCAGGTGAGCAAGGA

a score=4613
s chr3            94391385 107 + 160039680 TGGAAGTCGTCCTAGTCAGAATGTGCAGGGCCTACAATGCCAACAACCACACAGTCTTTTTTGAAGGCAAATACGGTGGTGTGGAGCTGTTTCGAGCCTTGGGTGAG
s HiC_scaffold_1 178303520 107 - 233722169 TGGAAGTGGTTTTGGTGAGAATGTGCCGTGCCTTCAACCCATTAAACAACACTGTTCTGTTTGAAGGAAAATACGGAGGGATGCAGATGTTCAAGGCCTTAGGTAAG

a score=10368
s chr3            94394915 382 + 160039680 TTCATGGTACTTTTGGTAAATG--TGAGGTCAGAAGCTGGGGTAGACTGATAAAGCAGAAGAGTAGCAGAAGGCAGCCTGGAAACCGCTGGAGGAAGAGCAGTTAGGAAGGCTTTCAGTGCCGTATG-AAGAGTGAAAGCCTCACTTCTAGGC-------------------------AATGCTGTACTCAGAG--CTGCTTAGGGAATTTCCTTCTGA-CCTGTGTGAAGGATCCATCTATGTAA--------CCGTTCGCTCAGGCCCTTGT-------TA----TTCACAGTCATCACAGGAGT--CCTGAGATACAGA--AATCACTTCAAACAGTCTCTCCCTG-AGGAATGTAAACTTTAATCTACAACAAAATGGATTTAAAGAAGGTCTGGGAAAGCAGTTGGAATACAAATGTGGTTGGATCCACTTT
s HiC_scaffold_1 139445381 428 - 233722169 TTCACAGTACCTTTGACTAAAGGATGAGATCAGAAGCCGGGATATGTTGATGATGTAGAAGAGTAGCAAAACTCAGGTATGAAAATTAAGTCAGAACAAAGTCAAGGAGGACTTTCAGTACCACATGCAAGAGTTATGCCTTTCTTTCTAGGCAATGGGGAGCCCTGAGGACTGGAGGAATGATATAATCAGAGTATTACTTGGTCAATTTACTTTGGAGCCAGTATGAAGGAACCATCTATGTAATCAAGGGGCCCCTTGCTAAGTGCCATGTACAGGGCTAGCATTCCACAG-----ATAGAAATGACCTTAGAAGAAGAGCGATGACTTTAAATAGCTTCTGCCTGAAAGAACTTGAACTTTAATCTATTACAAGATAGATTAAAAGAAGATACTGTAAC----CTGAAATGCTAATGTGGTTGGATTCACTTT

a score=303101
s chr3            94395802  9516 + 160039680 [encoded data, 10744 characters]
s HiC_scaffold_1 139446826 10105 - 233722169 [encoded data, 10744 characters]

a score=3803
s chr3            94397219 103 + 160039680 TGTGCAGCCAACATGTGGAAAAGCTGCAGATCTTCCAGCACCTCCACCCCATCGTGGTCCAAGCCGCCTTCCCTCCACTCTATAAGGAACTCTTCAGCACTGA
s HiC_scaffold_1 178320511 103 - 233722169 TGTGCAACTTGCACGGGGAGAAGCTGCAGGTATTTAAGCAGTCTCATCCAGACATAGTGAATACACTCTTTCCTCCGTTATACAAGGAGCTCTTTAATCCTGA

a score=18189
s chr3            94401911 1639 + 160039680 CATCAGTAGCTGCCCCACTGTGTGTGACTGCACCTCCCAGACCCGGGCAGTATTCTGTGCCCACAG---GCGACTGGACACTATTCCCGGAGGGCTTCCACTGGACACAGAACTCCTGGATTTGAGTGGGAACCGCCTGTGGGGGCTTCAGC------------GTGGCATGCTCTCCCGACTGGGCCAGCTCCAAGAACTGGACCTCAGCTACAACCAGCTTTCCACCCTTGAGCCTGGGGCTTTCCATGGCCTACAAAGTCTACTCACCCTGAGGCTGCAGGGCAATCGACTGAGAATTGTGGGTCCTGGGATATTCTCAGGCCTGACTGCCCTCACACTGCTGGACCTCCGCCTCAATCAGATTGTCCTCTTTCTAGATGGAGCCTTTAGTGAGCTAGGTAGTCTCCAGCAGCTGGAGGTTGGAGATAACCACCTGGTGTTTGTGGCTCCGGGGGCTTTTGCAGGGCTGGCCAAGTTAAGTACCATCACTCTGGAACGTTGCAACCTCAGCACAGTGCCTGGCCTAGCCCTTGCCCAGCTCC-CAGCACTAGTAGCTCTTAGGCTTCGAGAA-CTGGATATTGAGAGGCTACCAGCTGGGGCACTTCGAGGGCTAGGGCAGCTAAAGGAGCTGGAGATCCACCACTGGCCATCTCTGGAGGCTCTGGATCCAGGGAGCCTGGTTGGCCTCAACCTGAGCAGCCTGGCTATCACCCGCTGCAATCTGAGCTCAGTACCCTTCCAAGCACTGCACCACTTGAGCTTCCTCCGGATCTTGGATCTATCTCAGAATCCTATCTCAGCCATCCCAGCTCGAAGGCTCAGCCCCCTGGTACGGCTCCAGGAGCTCAGGCTGTCAGGAGCTTGCCTCACCTCAATCGCTGCTCATGCCTTCCACGGCTTGACTGCCTTCCACTTG--CTGGATGTAGCAGACAATGCTCTTCAGACTCTAGAGGAAACAGCCTTTCCTTCTCCAGACAAACTGGTCACCCTGAGGCTGTCTGGTAACCCCCTAACCTGTGATTGCCGCCTCCTCTGGCTCCT-------CCGCCTCCGCCGCCGCCTGGACTTCGGCACATCCCCCCCTGCTTGTGCTGGCCCCCAACATGTCCAAGGGAAGAGCCTAAGGGAGTTTTCAGACATTCTGCCTCCAGGCCACTTCACTTGCAAACCAGCCCTGATCCGAAAGTCGGGGCCTCGTTGGGTCATTGCAGAGGAGGGCGGGCATGCTGTT---TTCTCCTGCTCTGGAGATGGGGACCCAGCCCCCACTGTTTCCTGGATGAGACC-ACAGGGAGCTTG---GCTAGGAAGG--GTTGGGAGAGTAAGGGTACTAGAGGATGGTACACTGGAGATCCGCTCGGTACAGCTGCGGGACAGGGGGGCCTATGTCTGTGTAGTCAGTAATGTCGCTGGGAATGACTCTCTGAGAACC----TGGCTG-GAAGTTATCCAAGTTGAGCCAC----------CAAATGGCACTC---------TGTCTGACCCCAACATCACTA-TGCCAGGGATCCCAGGGC-----CTTTCTTTCTGGACAGCAGGGGTGTGGCTATGGTGCTAGCAGTGGGTTTCCTCCCCTTCCTCACCTCAGTGACCCTCTGCTTTGGTCTGATTGCTCTTTGGAGTAAGGGCAAGGGCCGGGTCAAGCACCACATGACTTTTGATTTTGTG
s HiC_scaffold_1 145877020 1675 - 233722169 CACCACTGGCTGCCCTGCCCGCTGTGAGTGCTCTGCCCAGAACAAATCCGTTAGCTG---CCACAGACGGCGTCTGATCGCCATTCCAGAGGGCATCCCTATTGAGACCAAGATCTTGGACCTCAGCAAAAACAGGTTG-AAAAGCATCAACCCTGAAGAATTTATATCATACCCTCT-----------GCTGGAAGAGATAGACTTGAGTGACAATATCATTGCCAATGTGGAACCAGGAGCGTTTAACAATCTCTTTAACCTGCGTTCCCTCCGCCTAAAAGGCAACCGCTTGAAGTTGGTCCCTTTAGGAGTATTCACTGGGCTGTCTAATCTTACCAAGCTTGACATTAGTGAGAATAAGATTGTCATTTTACTGGACTACATGTTCCAGGATCTGCATAATCTGAAGTCTCTAGAAGTGGGGGATAATGATTTGGTTTACATATCACACAGGGCCTTCAGTGGGCTATTTAGCTTGGAACAGCTCACCCTGGAGAAATGCAATTTAACAGCGGTACCAACGGAAGCCCTTTCCCACCTCCACAGCCTCATCAGCCTGCA--CCTAAAGCATCTTAATATCAACAATATGCCCGTGTATGCCTTTAAAAGATTATTCCACCTGAAACACCTAGAGATTGATTCCTGGCCTTTACTGGATATGATGCCTGCCAATAGCCTCTACGGTCTCAACCTCACCTCTCTGTCGATCACTAACACCAACTTGTCCACTGTACCCTTCCTTGCCCTTAAACACCTGGTGTACCTGACCCACCTTAACCTCTCCTACAATCCCATCAGTACCATTGAAGCAGGCATGTTTTCTGACCTGATCCGCCTTCAAGAGCTTCATATAGTGGGGGCCCAGCTCCGCACCATTGAACCTCACTCATTCCAAGGGCT--CCGCTTTCTGCGTGTGCTCAACGTGTCTCAGAACCTGCTGGAAACTTTGGAAGAGAACGTATTCTCCTACCCACGAGCTTTGGAGGTCTTGAGCATTAACAACAACCCACTGGCCTGTGACTGCCGTCTCCTTTGGATCCTGCAGAGACAGCCCACACTGCAGTTTGGTGGCCAGCA-------GCCCATGTGTGCTGGCCCAGATACTATTCGTGAGAGGTCATTCAAGGATTTTCATAGCACTgccctttctttttactttacctGTAAAAAACCCAAAATCCGTGAAAAGAAGTTGCAGCACCTGCTTGTGGATGAA---GGGCAGACCGTCCAGCTAGAGTGCAATGCTGATGGAGACCCACAACCTGTGATTTCCTGGGTGACACCTAGAAGGCGTTTTATCACCACCAAGTCCAATGGGAGAGCCACTGTGCTGGGTGATGGCACCTTAGAAATTCGCTTTGCCCAGGACCAAGACAGCGGGATGTATGTTTGCATCGCTAGCAATGCTGCTGGGAACGACACCTTCACAGCCTCCTTAACTGTGAAAGGGTTCACTTCAGACCGCTTTCTTTACGCAAACAGGACCCCTATGTACATGACCGACTCCAATGACACTATTTCCAATGGCACCAATGCTAATACTTTCTCCCTGGACCTTAAAACAATACTAGTATCTACAGCCATGGGCTGTTTCACATTCCTGGgagtggttttattttgttttctcctcctttttgtgTGGAGCCGAGGGAAAGGCAAGCACAAAAACAGCATTGACCTTGAATACGTG

a score=13033
s chr3            94405722  969 + 160039680 CCACCTCCACCCCACTCCATATTCTTGCATAGCTTTCTGAGGACACCTTGGAGACGTGAGACCCATTCATTTAAGGTTACCGTGTTGAGCACTTCACCAGCTTTTCTGGTAATCTGCCAGCCAGTCTTTTACCTGACCGGCCTGGAAAG---GTAACT--------------------------------------------------------------------------TAGCTCAGTTGTGATTG------CATAGGGgtgtg------------------------------------------------tgtgtgtgtgtg-----------------------------------------------------tgtgtgtgtgtgtgtgtgtAATCCTCACATTAACccca---------------------------------aaggtaaattagattgagttgttcaagtgcacagagctggttaataaggaagctatacttagaaactcagaggtggctgact--ccagatctaccatttctgctcTACAACAGGATCATCGTTCTGCTCTTGTAACAGACTCTCCAAGCCTCAGTTGTGTAACATGGGGCTGTGAGAAAAGTGACAT-TTCTATCCTACCCA--CCCCACTGTTACGGGGGTCTGGGTCCAGCTGTTGACTCTGACCTTTCCCCTATGA--CTGATGTACCTGACACAGGAAGCTGCTTTTACTCTCTTCTCCCTCTCTTAGAGGTTTGTCTGCCCCCAAGGACTGCAGAGAGGAGCAGAAATTCTAGGCATCAGACAAATGGAAAGGGAATGCCCGTATCTCTCAGAAGAGAATTTTATTATAATTAAAACATGGGTACTTCGGGGGTTCTAACTTC-----------------AGAAACCTCTTAGGTTAAAG--------------GACTTCCAGTATGGTAGAACAACCA--GAACCATCTGGATCCACTCACTCTGGCCAGCTTTTGTCTAGCCCTGCTGGAAAGGACCTTCTTAAAACCATTCCAACCCACCCCCGCCCCTTCCTTCCATTTTGGAAGAGCATCGGAGTC---------CGTAGGCTGAGAGAACTATAGACCTAAAGCCCTCTGGGACCATTTCAGCACTCTTCCATACTGGTCCCTGACCGATTGTTTCCTCTAATTTCTGATTTCTGGTTTTCCTTTGCTGTGCTGGATTCTATT
s HiC_scaffold_1 139457630 1168 - 233722169 CCACTTCCACCCC------------TTCAGGGCTTTCCCAAGACCCCTTCCAGAGGTAAAGCCTGTTAGAATAAGGTCACTGTGCTGAGTACTACCAAGATTGGTCCCAACATCAGCAAGCCCATCCCTTACCATACCAGTCTGGGAAGTCTGTGACTGTGCCAGCTGTGGTCTGTGTGCCAAAGAATATGCAAATACAACTGAGGCCATAGCAGGTGGCATGCTTACCAAATAGCTCTGTGGGGAATGCCAGCACACAAGGCTATGATGGTACCACGTGGGAGGGGACAGTTCAACTCCAGGCTCTGCCTGGGATGGGTGGGGATGATGCTGAGAAAAGAGGAAACATTTGTGGGGGGCTATTCTACATCAAGTGGCATTATACATGCTTTCTTATTTCATCTTCACATCGACCCTATAAAGCAGGTAGGCAACTGAACTGATGCAACTCAAAGTCAACTAGATTCTACTGCTTCAGTGGACAGAATTAGTTAATAAGGAAACCG---CTTGGAattcagccctgtctgactgacACCCCCTACTGCTTCCACCGCACTGCTTACTCACTGTT-TACTC----------CTCCCAAGACTTCA---GTGCAGGAT-GATCTGCGACACAGGTGACATCTTCCACCCCACTCACTCTCCCTTTTTATAAAAGACTGGGTTCTGCTGCTGACCCTCAATTTCGTTTCATGACTCTCATCCACCTGAGTCAGGAAGTCGCT----CTCCAATATCC---------AAATGCCTCTG-CTTTAGGGACTGGTGAAAAGGAGCCAAATTCCAAGGATCTGATAGACTGAAATGAAAGGCCTG--TCTCCCAGCAACGTATGTCTTCTTGATTAAAATGCAAG--CTTGAGATTTCCTAATTTCTTGTCTGGGTCTTAACTAGCAACTTACTAGGTTAGAGAAAAGATGTTCAgaaatttccagtacaaaagaaCAACCCATAAGCTCTTTGCATTCACTGACCCTACCCATTTTCTGCCTGCCTCGGCCTAACAGAACCTTCCCAAGGTCACCTCATTCTACCTCC-CCTCTTCCTCCGCTCTT-------CATTTCAGTCATGGTTTCGCCTAAGCCGGGAGAACTCTAGACCCAAAGTACGCTGGCATCATTCCAGCACTC-CCCATGTTGCTCCCTGATGTATTCTTT-CTCTAATTTC---------AACTTCTTTTACTGTATTGGATCCTCTT

a score=24017
s chr3            94411299 2189 + 160039680 GATTTAGTAAGtagtaaaa--tattaacaaagcatgtaaacaacttgcataaagtacaacttaaacacatt-----acatgc-agccttacttacaataaatgaaatgaaaatcaaagttgcaataacatgttaatttctattattgggttgtccaaaa----------------------------------aaaaaaaatcaggc-----------tgtgtgacaacatatg---------gtgtcagtatgc-tatcatacagg--tccttt------------------------tcatg------------catgcctggta------ggtgcaaaacttttt-------aaacttctgtggaaggcaatctggcaatactaaatcaaaGCCTTT-TCAAATATTGTTAACTGAATAAAAACTGGAAAAAATGTTTGTGGGAAA----ATCTTTGCAAAGCTGTGTACATTCAAATGAAATAACAAGGCACAATTCTTTGAGCTAATGTTTGTATTCGTTAAGTAGTTACCATGGGGATAGTCATTTAAAAGCAAAAttaatctgagcatggtgatacatgcccaggtgcatctctaagtttgattccagcctcatctacaaagagagaccctgtctcaaaacaacaaaacaaaactggtccacccaaagagttccaagccatccacgactatatagagatactgtgtcttataagtaaaaaaaaaaaAAAATTAAAGTGCAAAGTGAAGTATGCTTAAAAGTAAACAT---GTTAAAAGTTCTGGTTAAATACATCTTC-TATATCCCT--GTCATATCTTGAGATT-TAACTAAGAGTCAGAAAGGTA---GTTGCTTTGAAACACTAACATATATAAAAAGGAAGTTATAAAATTATATCTATAGCATGTTTTCAGCTGTGCAAAAATACATTTA----CGTGTATTTTAAGTGTGGGATG------AAAAATTTCCCAAGAAACTGGTTGTACTGGTTGCCTCTGAAGGGACATTTTCTTCAATAACCTTTTGTTACTTGTGAATCTTCTTGAAAGTGCATGTATTATTTACCCAAATATATATTT--TGGATGACTAGAAGGCGAGcatgtttgcaagcccagctactcaagagcctaagg--------------gaac---aaaatttgagaacagcctggacaacatagcaa------------CATataacagtagtagtggtaataataataataataGGAAATTGACCCAAAGACATCT-------------GGGTCAGACACAATGCTAGCTATGttcactcaacaaatgtttaat-gagtattcatcatgtgccagCACAAAACATCTCCTGGAGACTCGGAGCGACTGTGC----------CCTCGCCTCAAAG-----TGAAGGTGGTAGCA-------------------GGGCCAACCGTTCCTAACGGTTCGGGAACGACCCAGACGGCGGCTGGAATTCAGTTTTTCAAGCAAACCGCTGCCTGCCAAATCCTCCCCCTTCCACAGGTCCACGGCCCCGGGGCAAGGCAGGGGGCCCCTGCT-----GGCGCGCTCCTCCCATAGCTGCCTTACCCAGGTGGTGGCCACGGTGACTTTCGGTCCACGTGGCGTGTGCAGCGCCCGCCCCCATTTCACTCCTTTAACA--------------TAGTTGCTTTCCTGTCCCCTGGC---------TAAGATGGGGGTAGGGGGTCCATCCAGGCAGAAATTCTTAACAGATAAAGTGGCGCCGCAATCAGGAGGTGGCTTCCCCCAAGGCCGCTGG-CCGCGGAATGA----------------CTCCGTAGGCCTCGGGACACCCACGAGTGACC-------------CAATCCCCCGACCCTCGGAGCGCCAAAGTCCCTCGCGGCTTA--AAGCAGCA-CAACCT--------CCTAGAGGAGGACCGAGGA--CTCCA-GAAGCCTCTAATTGGCTGTTTAATTCTCAGCAGGTGCGAGCTCCATTAAAAGCATCGGCTTCCCCGGGCTCTAACTGGCTGTGGACGTGGGCGGGCTTGGATTTTCATCCGGGTAATTGGACTTGAGCGCGCACCAGCCACGTCGCTCACGGCAGTCCGCAGAAGGATTGGCTGCGGCGGAGGAGCGCGATTGGTCAGACTTCAAAGTGAGCGTTGATTGGTGAGGATGCGCTGCGGGGGCGGAACAAGCGGCTGCTGAAAAGCGACCCGCTAGGCGGCTGCGCTGAGGGAGCGACAGGGCGGCGGCGGCGG--GGGTGAGGTGCGAGGCGAAGCGCAGAGCGCGCAACTCTGGAGGAGCGGTAAAGGCAGGGCGCGAGAG---GGAAGTTTGGGGTGTGGGAGAAGCAGAGCGGTAGGGACCCTGGCAATTGGAAGACCGAAGCGCGGGACTGAGGGTCGGGAGGCGTGGGACACTTGGGGGCTAGGAG
s HiC_scaffold_1 139463794 2079 - 233722169 GATCCAATAACAagcaaaaaatatgaacaaagtatataaaca-tttata-aaatttcaattgACACAAATGTTAAAAGATGCTAAGTCTActtacaataaaagaaataaaaataaaaattgcaatgAGATACCAGTTAC-ACTATCAGACTTTCAAAAATCAAGATGTGGTAATACACTTTACATGCACTATCAAACagattcgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgggggaatcccttgcttcagcctcctgagtgcggagattatgggtgtgcaccaccatgcctggcaacagATGAcagaatacattattaaaaataaagttccaTGGAAAGCAATTTGGCAATACTAAATCAAAATCTTTCTCATACATTGCTGGTggaatgaaaatcagaaaaacc-TTGATGGGAAGGAGGAAATTTGCAAAATTGTACTTATccaaatgaaaaaat---gtaca-ttCTTTGACCTAGTGTTTTCAT--GCCAAGTATTTATCATACAGATA----------------------------------------------------------------------------------------------------------------------------------------------TCCGTGA--------------------------------------------------GCAAAATTAAGTATGCTTGCATATCAACATAATGTTAAA------GGTTAAATA--TCTGAGTATATCCCTCATTCTTACTATGAAACTCTTACTATGATGCTGACATGCATGTGTTGCTAAGATTT-CTAGACTATATGAAAAGAAA-CtgcaatataaaatgtataacatGCTAGTAACTG-----AAGTACATATAGATATATGCATGTTAACTAtggaatattttatgaaaaattcacAAGAAACTGTTGACACTAGTAGCTTCTGAAGGAG-----TCTGTAATAATCTTTTGCTCCTTTTCAATCATCTAGAATATGTAT--ATTATTAA---AAGTACATATTTCTTAAATTAGTGGGTGTCAGGCGTGCCTACAGACTCAGCTACTAGAGAGGCTGAATCAGGTGGATAGCTTGAACCCAGGACTTGGAGGCCGTCTTGGGCACCACAGCGAGACcctttctcttatttaaaaaaagaag----------aaaaaaaaaggaaaaatgtgctCACGACATCTCCCTAATTGACCAAGGCCACACTC--------CTGCGTTCATTCAACCGAGGCCTCTTCGGGTGCTTATCGAGTGCCA-----AAAGCTTCCCTGAAGGCGAAGGAGGAAGGTGCTGGATGGAGTCCGGGTCCCAAGGGACACCAAAGGCGGTAGGACAGGAAGCGCGCGGTGCGGGGGCCAACCGTTCCCAACGGTCCGG----------------------------------------------------CTAGATCCGCACTCGCGTCCAGGCCCACA--------------CAGTGCGGCCCCGCTCCCGCGGCGCGTTGCTTTCTCCGCCGCCCTA----------------------TTTCTGCCTACGAAGC-----------------CCATTCcactttttcaaaaagaaaaataaaatgtgttcgGCGCCTCGTGCTCTTCCATCACGATTTGGTATACCGATCGAGGTCCCCTCAAA--AAAAATCGCTAGAGAAACAAGTGGGTGTGCTA-----------CTTCGCCCATCGTCCCTGGGCTGTGGAATGAAACCTTCTTGAAAAAATTTCATGCGATTGGTGACACCCATGAGCGACTAGACGCCCTCGCACCAGCTCCAGCCCGCAGGCGCGCAATTTTCCCTCGGGGATTACCAGGCGGGATCAATCCGTGATAGGCTTAGAGGGGAACGGAGAAAGCTCGGTGACGCCTCTAGTTGGCTGTTTAATTCTCAGCAGGTGCAATCTCAACGCGCAACATCTGCTTTCCCTGGATCTTATTGGCTAACAGGATGGGCTGGCTTTGGAGTTCATCCTGGTCGTTGGACAACAGCGCTGAACAGCTACGTCGCTCACAGCAACTCGAGGAAGGATTGGTTGAATCGGGCAGAGGCTACTGGATAGACTGAGAGCGCCGCGTTGATTGGCGCGGAAGGGCTGCGGGGGCGGCG-AGGCGGTGGTTGAAGCGCGGCCAGCT-GGCGG------------------AGGGAGGAGGCGGTGGCCCAGCCTGGTTCGAGGTTGAGCGTGCGAAGACAGAAGCTGGAGGAGCGGTACGGGT-GGACGCGAGAGTGAGGCAGTTTGGGGGCTGTAAGCA--------------ACCTCGGTAACTGGGAGGCAGAAG-GCGAGGCGGAGGGAAGGTGGTCCCACG-CACCCCGGGGCGAGGAG

a score=23875
s chr3            94421279  989 + 160039680 AAGTAGTTCAATATGAAATCTAACTATA---TGTGGGTTTTTTTCACTGTTAACTATTCTATTTGATATTGTACATAAACCACAC---AATGCTTTTCTAGTACTAAAAGGCAGCATCCTTTG---ACAGGGAATT-TAATTAAATCAGCAT---------CAGAAACA-----GTTGCTTCCTGGTGTTTAGCCACTGCCTGAAACAGGAAGATGAACACAAACTGAAATACAGGTATCTTTTCCTTGATTCTGAGACAGTGAA----TTCCCCAGTATTTAGACATATTCATATGCTCAATTATATAATTCTAAATATAAAACCA---TTCAGTAGGT-----GATG----CCTCCATCTTTGTGGAACATTGAACATTACTAATTAAGTCCAATCCTATTTTGAGAAAGGAAGAACAGTGGAGGTATTTATGCATCTGGAAGTGTTATTTTTAAGAAGGTAACTTCCAGTTTACTACAAGTCACTTTGACTTAG---TAAACTGTCTGATAAGGATGTTGTTATGTTACTATCTG-TAATTATGATCTGTGTTATGGTGAATGA-----ATTAAATT------------------------------------------------------------------------------------------------------------------AAAAGCCATGAGACATT--TGTTTTGT----AATAAGGCAGTGGA-ATGACTTGTTAATGGCCTTTTTAAGATAAGCTATTAGGTCTGCCCTTTCTCCCTTCTTCTTCtttttttttaattttatttttttagttaggtattttcttcatttacatttcagatgctatcctaaaagtcccccatatcctccccccttccctTCTTCTTAATACCAGTGAAGATT-CTTCCACCCACGGATGTATTTTTTGGGATTCTCCAAATACTCCATCAGTGTATCATTT-CCCAGATGATGCCTTTGTTTTTGTTGGCATCTGTGTAAGAGACTCCAGCAGCCTAACCTG-----CAGCCCAGGCAGACCATGGGAGTTTGGGCCAGTCTTATGCTTGCTTCCCTTTCCA-CAGTGTAGCACTGGGCACACTTCTGAACAAAAAATCTTCTTGTCTTTCTCAACATCACCCATTTTTAA
s HiC_scaffold_1 207105637 1016 - 233722169 AAGGATCTCAACTTATAAATCAACtataaaatgtga-------taaatattaaatgttc-ATGTGGT--TATACATACACCACATTAAAATGCCTTTCAGTAAGTAAAAGGAAGCACTTTTTAGATACAGTGAATTCTAATTAAATTGGCATAGTCAAGACCAAAAATATAGACATTGCT-CCTTGTCTTCAGCCACTCCATGGAAGAAGCtaagaaacacaaattgaaaCACGGGTGTCTTGT--TTGGTTTTGAGATAATGAAGGATTTTCCCAGTTTTTAA--------------CCAATTACATAAATCTAAATATAAAGCCAACTTTCAGTAGATTTTGAGATGACATTCTCAATCTTTGTGAAAAGTCAAACGTTACTAATCAAGTCCAATCATGTATTTAGAAAGGGAAAACAGTGATAGTATTTATTGAATTGGAATTAGCATC----AAAACTTGATGCTAATTTAGCTACATGCCAATCTTACTTAAATCAggactatccaacaaaaacatt---------cTGTCAACCACTCATGATCTGAAGTCTGGTATATGAGATCTATTAAATTATGGCACACATAAAAAAGGCCAAGAGagggccagggtttagctcaggggcctaagcacctgcctagcaaaagtgaggtcttgagttcaatccccagtaccaaaaagaaaaaaaaaaaagccaagagacatttctgttctgtaataaATAAGGCAGTGACTATTACTCATTAATAG-CTTTTTAAGGTAAGCT-TTAAGTGtgccctttc-----------------------------------------------------------------------------------------------------tcccttctttttgaTGCCAGCAAAGATCATTTTTGTTCCAGGGTTTATTTCTTGGGATTCTCCAAACACACCATCAATGTATCCTCTGCCCAGGTGATGCCTTTGCTCTTGTTGGCATCTGTGTAAGAGAATCCAGCAGCctgacctaacttcctccccCAACAGACCATGGAGTTTGGGCCCTAGATCGTGTTTGCCTCCCTTCTCAGCGGTGTGGCACTGGGCACACTTCTGTACAAAAA----TCTTG----TCTCAGCATTACCCATTTTTAA

a score=105238
s chr3            94422728 3667 + 160039680 [encoded data, 4105 characters]
s HiC_scaffold_1 139473822 3790 - 233722169 [encoded data, 4105 characters]

a score=83848
s chr3            94427345 2202 + 160039680 AAGTTCTCAGCCCAGTTTTTATGTTGCCTGTCTCATTACTGTTTCTA-AATGTCATT------GAAGAATGAAATGGCCATCGGTTTCCTCTTCTATGCAAAGATGCTAGCTTGAACAAGAAAGGGCAGAGCCCCTAAAAGATATTAATAGGCTTGCCTAGGTTCACATAATACATCCCTGGTAGAATAGAATCTGGAATGAGCAGAATTGCTGCCTGTGTACTTGTTTATTGATCCTGCCAGACTTAACAGATGGAGGCTTAACCTTCACTATAATTGATGCCTCATTTGAGTACA-TGGAGAATGATAG-----TATAAA--------------CCTAGTTACATAGAAAGGCATAGACAATAACTTGGTACCTTTCTTCAGGACATTTTTGTATGA--TTGCCAAGTTGT-CTCTAACCATTTCTAAAATGGTAA-----ACAGCCACTGAGTATTTGAGTCTTTCATCTTCCTGATGCAGTCTCCCGATTCCAATCAAAGATGGTACTGATATGGTCACCATCCTTACCCCTGTGTTCAGTTCCCAGTCCTGACTTCAGTTTCCATGCTGATGAGTACCTAGAAGTCTACGTTTCTGCTTCTGAACACCCTAATCACTTCTGGATCCAAATCATTGGTTCCCGCAGCCTGCAGTTGGATAAACTTGTCAGTGAGATGACCCAGCACTATGAGAATAGTCTGGTGAGTTGCCATAGGGACAAAGTTAGTCTGGGGC-----------TTTTTTTTTCACTGTAACATATTCCCTTCCTCT-----------------GCTCT----------------------TCTGTTTATTAGCTACAACTTC--ATAATAACCCCCTCGACTTCCTATCCCCACAAATAGCCTGAAGACTTGACTGTGCATGTAGGAGACATTGTAGCAGCACCTTTATCTACAAATGGTTCCTGGTATCGAGCCCGGGTTCTTGGAACCTTGGAAAATGGAAACTTGGACCTCTACTTTGTTGACTTTGGAGATAATGGAGATTGTGCACTAAAGGATCTCAGGGCTCTCAGGTGGGTTCAGAAGCCAGTATGGAATCTGCTAGGAACCCAACTTTTGTCTTACTCCTGGCCATAAAGTTGTGAGCTATTgggccagtgcaatggctcagtggg--taagagcactgagtgctcttctgaaggtcctgagtttaaatcccagcaaccacatggtggctcaca-accaccagtaatgagatctgatgccctcttcttgtgtgtttgaagtcacctacagtgtacttatgtataataataaatattttttttaaaGTTGTGAGCTATTGGCACATATCAAGAGAATTTAGAAGGGGACATGGTATCTGGGATTCTAATTTTAACTTCTTTGATTTTAGGAGTGACTTTCTAAGCCTCCCATTTCAAGCAATAGAATGCAGTCTGGCACGGATTGCCCCCACAGGTAAAGCAGTCATGCCACCTATTGATTTTTAACTCCAAAGGAGTAACTTTCATACCGCACATAAAAGGAATTCTCACATTCCCAAGCTTTTTGAGTTTTGGAAACTCTAGTGCCTTTTCCTTATCAGCACTAGAAAGC-------ACAGAAACTTGCTTGGCAGTCAAATGCAAACCCACCAGAGAAGAACATAACTATATTTCTGGGAAGAAAAGTGTAGTTTCAGTTTCTCTCCAGGCTGTATTCCTATTCTTACCAGCACTGACATACTCTTATCTGCTCTGAGGC-TCAGCCCCCCTTTCCCTTATGATCTTTTTCCAGGTGAAGAGTGGGAAGAGGAAGCTCTAGATGAGTTTGACAGACTCACTCACTGTGCTGACTGGAAGCCCCTGGTGGCCAAGATTTCTAGCTATGTCCAGACTGGAATCTCAACTTGGCCAAAGATCTATTTGTATGATACCAGTGATGAGAAGGTAAGGGTGGGGTTCATACACTGCTTACTGCATCATCCATATCTTCA--------------------GTCCCAGAAACCCTTACCTGATATCACTTCTACTTTGGAATAT-CTGCTAACCATCTCACCA----------------------------------CATTTCAGTTGCAAATTTGCTCTCCCTTACA-AGAAGA----CATTCATTTTTCA---TTTTCAGAAACTTGATATTGGGCTAGAATTAGTTCGTAAAGGGTATGCAGTTGAACTTCCTGAAGACATGGAAGAAAACAGAACTGTCCCAAATATGTTGAAGGACATGGTAAGTCATTGT---CATTTAAGGTGCATCTCCCAGGAAACTCTAATGCTTAGAGGCACAATGAAAGTGTGTAGCCATAATATTTTATCAGT
s HiC_scaffold_1 139477611 2175 - 233722169 AAAGTCTcagtcaggtttttttttcatttgcctcattactgtttttttaaagtcACTATTTGAGTAGAATGGAAAGGCCTTGAGCTTTCTCCCATGTGCAGGGGTGCTGGCATGGGCAGGGGAGACCAGGGGCCCAAGCAG-CACCAG--GGCCTTCCCGGGATCACATGATGAGTCTGTGATAGAATGGAAGT--GGATGAGCAGAATTGCTGTCCATGTGCCT-TTTAGTGGCCATGCTGCAGCTGGCAACTGGAGAATTTACCTTCATTATAATTGGTGAGTGGTTTGAATACAATAGAACATGATAAAAGACTATAGAATATTACAGTACTTTCTACTTAGatagaaagacacagaaaataacTTAGTGCCTTTCTTCAAGATCTCCTCATAAGAATTCATCCAGTTGTGCTCCAGCCAGTTTTAAAATGGTTATGGTTATAGCCACTCGGTATTTGTAACTGTCAGTCTCCC-ATGCAAGCTCCCCATTGGTACCAACTGTGGTTCTGATATGACCACCATCTTTATCCCTGTGTTCAGTACCCAGTCCCGACTTCAGTTTCCATGCCGATGAGTACCTAGAAGTGTACGTGTCTGCATCTGAACACCCTAACCACTTCTGGATTCAAATCATTGGCTCCCGCAGCCTACAGTTGGATAAACTTGTCAGTGAGATGACCCAGCACTATGAGAGTAGTCCGGTGAGTTGTCATGGGGACAGGGCTGGGGTTGGATAGAAAAGAACATAGCTGCTTCATTGTAATTTGTTCTCTTTCTGTAAGAAAGCTATTTGTTCGTTCTTCCTTCTGATATTCCCCGTGTATCTGTTTATTATCTATCACTTCTAATTCTAGCCTGCCTGATTCCTCCTCCCCATGTATAGCCTGAAGATTTGACTGTGCACGTAGGAGACATTGTAGCAGCACCCTTATCTACAAATGGTTCGTGGTATCGAGCTCGGGTCCTTGGCACCTTGGAGAATGGGAACTTGGACCTCTATTTTGTTGACTTTGGAGATAATGGAGATTGCCCACTGAAGAACCTCAGGGCTCTCAGGTCAGTGCAGAGGCCAGCATGGAGTCAGCTGAGATCCCCG--------------CTGGTCACAGAGTGGTGAGCTGTTAACTCATC-------CCCAGAGGGATTTGGGGCA-----------------------GGGGGTAGGTTGCAGAGAAC------TTGCTCACAGAGCACAGGTGAT---------TTTCTTATACTGGCTTGGCTGG-----------------TTCTGTCTAAAAGCAAGGA-----------------------------ATCCAAGGAGACCCT---------CATGGC-CCTAAGACTCTAACTGCAATTTCTTTCACTTTAGGAGTGACTTCCTAAGCCTTCCATTTCAAGCAATAGAATGTAGTCTGGCACGGATCGCTCCCTCAGGTAAAGCAGTCATCCTACCCACTGACTCTGCCTTCAAATAG---AATTTCCATATGGCCCACAGAAGGAACTAGCACATTCTCAGGCTTTTTGAGTTCTAGAGAGTCAGGTGCCTT----CTAACAGCACTAGAAAGCATCAGGTACGTACACTTGCCCCAGAGTCAGAACCAAACCCAGAAGAGAATAACATAAGTGCCCTCCGACATAGATGGGGTTGGTCAC---------------------------CCTAATAGCACTGAC----------CCCTTCTGAGGTGTCCACCCACACTGC------AATCTTCGGCCAGGTGAGCAGTGGGAAGAGGAAGCTTTGGATGAGTTTGACAGACTTACCTACTGTGCTGACTGGAAGCCGCTGGTAGCCAAGATCTCGAGCTATGTCCAGACTGGAGTCTCAACTTGGCCAAAGATTTACCTATATGATACAAGCAATGGGAAGGTAA-GGTGGGGCTTGCTCA-GGCTCGCtggatcttctgtattttcataaCACTGCTTACACTTTCTTTCCGAGAAA---------GATAGT-CTCCTGCTTTGGAAGATCCTGCTCACCATTCCGTCAAAGGAATGTCTTTAAAGTCCCGGCTCTTCTGTCCCATTTC---CTCAGATTCTGCCTTCTTTACATAGAACATCATTATTCCCGTTTTATTCTTCTCAGAAACTGGATATTGGGTTAGAATTAGTTCGAAAAGGCTATGCCATTGAGCTTCCtgaagacatggaagaaaatggaactgTCCCAGACATGTTGAAGGACATGGTAAGCCATTGTAGCCACTTATGGTGCTTCTC----AGAAATGTAATGCATGGAGACACAGGGAGGGCTTCTGGTCAGGACATTTGTTAAGT

a score=43741
s chr3            94430026 1952 + 160039680 TTTTCTCTTCTTC-CATGTCCTAAGGCCACAGAAACAGATGATTCTCTTGCAAGCATACTCACTGAAACAAAAAAGAGCCCTGAAGAGATGCCACATACCCTGTCCTGCCTCAGCTTGTCAGGTATAAACGACGGTAATCTCATACATCTGTGAAAATTACCTTTTCTGAGTCTG----TCCATATTAGAGAGATTAAGTTAAAAGTTGGTTCTgggattggggaatgtggcttggttgatagagtacttaactagtattcacaaacccctggattatatttccagctgagtatgacacacttaggagagggacatatacctataattccatcattgctgagtggagggaggagtatcacaaggtcatggccattctcagctacatagagaagttgaggccagcctacactccatgggattctatctaaaacagaaaaCCACTTGGCTCTTAGGAGAACCACCCATTTTTCTCCTTGAGCCTCACTAGCAGTGCCAGTTAGAATAAGGCAATCT-----TATTTCCTTGTTTCTGCTTGGTAGAAGCTGCCTCTATGTCTGGTGATGATAACCTTGAAGACG---ACTTATTCTGAAATCTGGGCTTCAGCTGCTGGATCAGCCATCTGCTTTGCTGTGTGAGTGGTGCT-GTCATCTATCTGTAGCAACAGGAAAGTAACAGGGATGAC-----------------AAGACCCTCTTCCCTGTGCTCCTACGTGTGTACATTTCTCTGTGGCATCTTTGATGCAGCTTAACTTGCTCTAGAGTCCAAACTT-TTAAGTTTCTTG----TGTCTGTGTCTTTGG------------CAGGATGTGGTGCCGAGAGAGGAGTCTATGATAGAGAGATCCATGAAGTCCTTTACTT--CACATGGTGTGGCTTGCTGTGAATCAAATCCATTTTTTGTTTCATTGGATCTACCAGAAAGTAACAGACGGAGGCAAATGGAGACAGATTTCTCCACTCCACTC----CTCTGGTTCCTCCCCTATCTTTCAATGTTTGAATGCTG-TATAATTCCCAGCCTCTCC-ATATCAGGTTCAGTTCCCTCTGCCAGTAATATTTTGCATTACTGCTGGGCTATG---TTTTTGAGGCTGAGAAACAGCCA-AGGTTTGGGCATTGGAAG---TGATGATTCTGCAGATTTCTGACTCGACTTATCAGGTGACTGTAGTTATAGGAAGTATT----TGGTGGACTCAGAAGACTGCAGTT--ATCAGGAGATAAGG--CAAAATCAGCAT-AACTATATTTAAAA-GCCTCATAAAAGGGGAAGAGTGTACTACCTCTCACCCACAGTTGCCGAG--GTTATTGGAGATGGGTC------------CTCCAGCTATTTCTTTGTGAACTTCAGTTAAAATACAACTAGAAGGGAGAAGTATCTTAGGAAATG-TGTAAACGTGTTACAAATATGTGTCTGTATACACACAACTAGAGAGAAAGAATGAATATATATAGTTCTGCTTAAATAATTTG-GGGAATGTTTGCT-AATAAAGTTCTCAAAAATTATCTAAAAACACAT--ACTCAGTCACAACGTGGGAGTAGGC--------CTGTGGGTAAAGTCTCTTCTGAG--TAAGCCTTGGTAGTAATTGCCAGCA-CCTCACATACGG-AAGCATCTTGAGACAAATGTCCTTCCCATACAAGTATTCACACTCTTCCCGTAAAGTCACTGCAGAAGTCCACTACTCCCTCAGAACCATAACCAGTTTTAGCTATATACACAAA--CCTACTTACACTGTAAGA------------GAAGG-------CCTGTACTAGGGTTCTAGA---------------AGTAGGTCTTCACTATAAACTTAC-------------------TTTACTTCTAGTGTCTTTTCATTACTGACAGTAGTGCAAGACACCACTGAGACTTGTGACAGTACTTAGAATTAAATACA--AAATGCATAGTGATTTAACGAACTTTAGGAAACAAGGCAAGGTGAACTGGGAAA-TCTAAACTGAACACATGGATGCCTTATAT--AGGCTTCTCTAAACTCTAGTATTAGT-agccatgcctg
s HiC_scaffold_1 139479804 1817 - 233722169 TTTTCTCTTGTTCTCGTGTCCTCAGGCCACAGAAACAGATGCTTCTCCTGCTAGCATGCTCACAGAGCCCAAAAAGAGCCCTGGAGAGATGGCTCATACCCTGTCCTGCCTCAGTTTGTCAGGTACAGACTTCCCTGCCTACA-GCATCTTTG-GAGTTAGCTCTTCTCAGTCAGGGTCTCCAGACTAG-GGGATT-AGATAAAGCTCAGTTCTTAGGTCAG-------------------------------TAGGCATCAagagtcctttttttttgtttgt-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttgtttttcctgggTTCCACTGCCAGTACCTGCTAGAAGGCGGCAGTATCTAACTTTCTCCTTACTTCTGCTCAATAGAAGCTGCCTCGATGTCTGGTGATGATAACCTTGAAGACGACTACTTACTCTGAAGTCTGGGCTTCA---GCTGGCTCAGCCATCTGCTT--CCCTGTGAGTGGAGATAGTTGTctgta-gcagcagcaggaaagtAATGAGGGTAACCACAGGGACCTTGCTTTAATTCTTTCTTCCCTGTG-TCCTGTCTTCATAAATTTCTCTGCAGCTGCTTTCCTACAGCTTAACTTGCTTTCAGGTTGAGCCTTCTCAAGTTTTTtgtctctgtttgtctctttGGCAGGTTTTGGCACAGGATTTGTTTCCTGGAAAGAAGT---TGATAGAGAGATACATGCAGTCCTTCTTTTAACACACAGTCTGACTTGCTGTGGACCAAATCCATTCTCACCTTCTGTTGGACTACCAGAG------AGAGTGGGCCAAAGGAATACGAATACCTCCCCCTCCCACATCACTCCCATCCCTCCTGTGTCTTCCAGTG-TGGGATGCTGCTGTTACTTCCAGGCTCTTCGACCTCAAGCCTGGTCCCTTCTTCCAGTCATGTTGCAGATTGCTGCTCAGCCTTGTCCTTTTTGAGGCTGTGAAATAGCCAGGGGTTTGGTCACTGGGAGAAATGATGATTCTGCAGACGTGTGTCTCACCTTGTCAGGTGACTCTTGTTAAGGGAAGTTTTAAAGTACTGGACTCA-AAGGCTGAAGTTGAGTCAGAAGACAAAGgcaaaaatcaacataaaatatatttaaaaggccTTGGGAGGTGGGAAGAGAATGCCACCTTCCATCTTCAGTTGCTGATACGATATTAGGAGCAGGTTTTTGAAACAGTGCTCCAGCTATTT-TTTGTGAACTttagttaaa----aattaaa---gagtgATGGCTCAGGAAATACTGTAAA----TTGCTAGTATAGCTTTATATGTGTACAAATATATACCAAAGA-GAACATACACAATTCAGTTTAAATCATTTGAGGGATTCTTTGCTAAATAAAGTTCTCAGAA------TTAAGACATGTTCATTGAATCACATCG-GTGGTTAAGCACCTTTAACTGTGGGTAGAGTATCTTTTGAGCCTAAACCTGGTGAG-----ACCTGCAGCCTCGTGTAAAGTACTCATCTGTACACAAG-GCCCTCTCCTTGCA--CTTTCATGTTCTTTCCCTAAAGTCATTTCC-AAGTCAACCA-------AGAACCATTTCAGGTTTAGGCTATGTAAATAAAACCtcacttgcattgtttgatcttgGGCTTGGGGAGGACTCCTATCTGGATTAGCATTCTAGAAAACTGGAATCTAGCAGTGGGTCTCCGCTGTAAACTTACCGTAAGGCTTTGTGGAGTGTTTCCTTATAGCATCTTTCCATCTCTGATAGTATTATGAGGCTCCAGTGAGA-----------ACCAAGAAAGTGATACAATAAAGGCA---------AGTGAACTTTTA----------AAGATAAACTGGTAAATTTTAAATGGCATGTCAGGGTGCCTTATATCAAACCTTTTCCCACATCTAGGAATAGTGAGGTGTGCCTG

a score=84492
s chr3            94433182 4045 + 160039680 [encoded data, 4405 characters]
s HiC_scaffold_1 139489335 3621 - 233722169 [encoded data, 4405 characters]

a score=38607
s chr3            94442201 3384 + 160039680 CAAaac--aacaaaatggaattctcatcagctgtaacaggaacacctgcaggtagggcagtttataaagaatggggcatacat--------------------tacgttttaaatgtctgtta-gacatataagatg---atgatgaataagaagttgggtattccaatgtgaagtttgtggga-gcctag------gataagaatttggacatcactggcatataaatagcg--gttagccataa---ggtgaactgagagcatcaagacactggatactaaaaagaatgaaattcca---catactgagtgctgggTGCA----------------------AACAATTAAA--AGACTGTTGAAGACTTGTCCTGAATACCAAGGAAATGCGTGTAGGTCAGTCTATGTAAGTGCACATAAAATGGAGTGTAGCACATCTTTCCACACTCCTTT-----ATAGACCCTCAT----------------TTTATAACCATCTATTAA-GCACAAAG-----ACTCCACAG------------------AAGGACCTGCTTGTGCCTAACAGTAGTTTCTTTTTCTCTACAGTTTG--TCTCCTGC-------AACTCTTTAAATATTAGCTTAAATACAATAGTAACAA--------------TATCATGGAAAGTTGCAGAGTTTTTAGAGGATCCCATCCTTCGACTACTTTTAGAAAGATTCAAGGGAAAATTGAGAGTGACATCCATATTTTAGTGTTCAGAAATTATAGCATGTCAAAATTAGAAGTGATCCCAGTACCTAGAACT--AAACCAAA---CCACTTA-TATTGTTATCATTGGTTTTTATGGATAAAAATCCTCCTCCTCACCAGTTAATTATTATTATTggtctcgctatgtagccctggctggcctagagcttgagatgtaaaccagattagcttgaacttgtcctgcaggaagattacagggtgcgccaAGCCCCCTCCGCCTCTTTTTTTAAAAGTGAAGCCaaaaaaaaaaaaaaaaaaaaaaaaaaGTACGTTTTCCACTGTCGGTCCACGCAAAGCTCTGTGGAAAGTGGTGACAAAAAAAAAAAAAAGCAGTTCTCTCCGCTGTCCTATCGTCGGCGTGCAAGGCGGGGTTGCGGCAACTCTCCCACTCCCC-ATGCCCAGGTCTCAGCGCAGCCTATATCTATACCACTCAGGCGCGCCGCGGGCAGCCC----AGAGGCGCAGCTGCGCAT--GCGC-GGGGTCCTTCTTCCGCCTGTCCGCTCCGCTGTCA---TGGCGGCCTC---TGTGGCTCCCGGGGTTAGGACTCTGTGGTGGGCAGGTGCTGCTTGGCTGCGTCAAGGAGGCATCCGGGAGCTATTCCGGCCGCGAATTGAAGGGAGTACCCCGGGGCGTGACTTCAGTCTCTCTCATTATCAGGTGAGGGCC-GGCTGGGGCT--TGGGTCCTACACGGTGGGGGACAGGAGTGTCGTTCGTGCCAGACTCAGACT-GCGGG-GCTGG-----GGGGCAGACTTTCCTGGGGACGCCGGCGGG-GTGGCGGGTTGTTCTCTGCGGACACTCGCTCACCCCAGCCTCCCTGACCACCAGAGCACGGTCATCGTGGAGCGCTGGTGGAAGGTGCCGCTCGCCGGGGAGGGCCGAAAGCCGCACCTGCACCGGCGTCACCGCGTGTATAAGTTGGTGGAGGACACGAAACACCGGCCCAAAGACAACTTGGAGCTCATCCTCACGCAGTCTGTGGACGGTAAGGCTTGGGCCCAGGTACTGACCC-----CTTCCCCTG----------------TCCCTGTCCTCTGTCCCCTGCTCTTG-TTTGACGTTAACCGCTTCCTGCCTCTCTTTTGTTGCTTTGTTTTTACTACTTTGTG------GTTCTG-GTGAGAAAAAAAAAGTCACGGAAAATTAAAACGTGTGTGCAATATTG-TTAACTGTGTAAAG----AGAAGCCTAACAGTTCGCAGCACAAACAGTGACATTCTTTGATTGAACAGCTCAGTCTGCACCAGTTTTTAAGCTAGACGTGTGACAAGTGTAGTTCCTAATAAATGCATGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagaaagagaaagaAGGGGGGCGCCAAAGGTCCACCTTATTTGATACAGGGCATGAGTTGAGCCCC---CAGGGATGTAGGTATTACCTCCCCTCAGTGCTAAGGTTATGGACAATATCCAAACTCAGATCCTCTATGCAGCTGGCACTTTAACGACTGGACCTTATA--ACCTGCCCTAGTAAAT-TGACGGTGGTGGTGGTGGTGGTGTTTG---TAAGGAAGAATAAAAACTGTGAGAAAGTAAG--GGCTGTCTCTTT-TCTATGCCCCTCCCT---TTTGGTGATGCTGGAGATGTACCCCAAGGCCTGAGTACACTAAGGCACAGCCTTTACCTGTGGCTGATCCCATGATCATCTTTTCCATAGCCTGCAGAGATTTCATCTGCCATTCCCGTTCTCATTGACAGAAATTGGAGTCCGGGGTGATCTGGTCTCAGTGAAGAAATCTGTGGGTCGTAACAAGCTCCTTTCTCAGGGACTGGCAGTGTATGCTTCTCCTGAAAATAGGAAGCTGTTTGAAGAGGAGAAATCGGTGAGCTCAAAGGACCAAGG--GGTTTGGAAAAATAAAACTTT-AAGGTACCTGCTAGGAA-GTCCTTCCTTTTGTTGTTTAATTCAAAGATGAAGTAACAGCTAGAA----------CCCAGAAGCCCACCAGTTCCCAGCACAGCTGGGCTGTAA--TTACTCAGTGTGG---CGCATTGCTTCTACTCAGTTTCATC--------TCTTTCAGCTGAGACGCGAAGGAAAACTGGAGAAGATCCAGACAAAGGCAGGAGAGGCGGTGAGTAGGAAGTTTTTATTGATTCCTCATGGAGGTCATCGCCCTCCTGAG----TCCCTGATGGCCTTCACGTCTGCTTATTGTTACACACAAGGATGAGCTAAAGTAGTATTGTGGCTGATGctctgtgtagctggtatggagtcctctggaactgctgtgttgggtacagtgtactggaactagctctgtacatctgcctgcctctgcctcccaagtgctgggattaagggcgttggacaccacagctggctgcttttttacTTCCTTTAAGAAAATGTGCCAATTTTTTAATTTGTTCATTTCTTCCATTTGAAATACTCAGAGCCTGGGATTTTGGGGGGGGGGGTGCAAAAAATGCCCTAGCTT-TTGAGGGAGT-CCCAATCCAGGAAGCA-AGATCTATGGGAAAATATAAGATAAAGACTCTGCCTTTTGGGAATATTTTCAAATAAGTTGGAGAGAGAACTGTAGACACACAGGAGAAGGTAGTCAGCAAACTAAAGGCAGTAAAGTAGGAGTCACTTGATAGACAGCTGGAAAGAGGGTCTGGAGGTGCTGGGGGGTAAGAGGGGAGGGGTACTTTTTTCTTGTAGTAGTAAATAAGGCC-CTTGGAATTAGTAGGTTTGAGGCAATCTAG
s HiC_scaffold_1 139494084 2819 - 233722169 caaaacCTGAAAGAACGGGTTTCT-GTCAACTGAAATGGGAAACACT--AGGTGGGGCAGTTTGGAGGAGATGGGTCAGAAATCAGTTTAATCCGGGAGATGGTAACTTTGAGATGTCTGTTAAGACATGTAAGGGGGAAATGACAAATAAGTAGCTAGATATTCTAATATGGAGTTTGTGAGAAGTCTAGAATGGTGATAGAAATTTGGAAATCAATGGTATATAAATAGTATTGCAAGCCACAACTAGATGAG--GAGAGTAT-----------ATGTTGTGAAAAGCCAATGTCAAAGACTAAATGAGTACCGGGGACACTAAAAAGTGAGGAGAAAGATGAATCATCAAAGGAGACTGTGAAAAA---GTCCTGGAAGCCAAGAAAAGGTCTCT---------TATGT--------------TGAAGCATAGAGCATCTTTCTGGTCTTCTTTGCCAAACAGACTTTCATGATGGTttgtgtttggtttgttttgttttattagtacataatgtttatgttCCTTAGGAAATTGGTGCATTCCTTAAGTTTCTG-----GCCCTACCGTAGTTCCATTTT-TCTAGTGCTTAGATCCCTTGTGCCTCAAAATCCTTCAAATATTG---------CAAT-GTAACGACTAAGGATTAGACTTTTCCCGGG--GTCGGCGGATTTCCATAAGTTCCCATGCTTCAACTACTTTTAGATAAATTTGA----------AAAGTTCCATC--------AGTGTC-----GTCATAGAATTTCAGAATTACAAGTGGCTTCA-CCCCTAGAGCTTGAAAGCAACAGTCCACCTAATAATGCT-CCATTG---TCTATCAATAA-----------------------------TTATGGGTCCC-CTCCACAGCC----------------------------------------------------------------------------ACCTACTCTGCCTCccgctt-----------------aaaaaaaaaaaaaaaaaggagggga---------------------------------gagaaatgCTGA-------ATCAAAGAgtatttctttcagatttttaaaagagtgTTGGAGAAGTAGCGACGAAATGAccctctttttcctctctgctc------CAGCCCAGACAACGCCGCGCCGGCTCAGGCGCGCCGCGGGCAGCCCCAGCAGGGCCTTTCCTGCCTCTCGGCGCTGGGGTCCTTGCTCAGGTCGCCCTCTGCCCTGGCAACATGGTGGCCCTCATTGTGTCACCCGG---CAGATCTCTGCTGCGGCGAGGAGCTGAGCGACTGCT---GGGAGGAGTCTGGGATCTACTCTGGCTGCGACTTGAAGGGAGT---CTAGAGCGCGACTTCAGTCTTTCTCACCATCGGGTGAGAGCTTGGTTTGGGTTAAGGGAGCCTTGACTTTGGTG---AGGCAATTTATTGCTGAAGTACTGAAGCTTGCAGGAGCTTGTCCTTGGGGTTGTTTTCCCTTGGTGCG--AGTGGGCATGACAGGACGA-CAGTGTGGG-GCTGGCTTATCTTATCTTCCCTGATA--CAGGGCACAGTCGTCGTAGAGCGCTGGTGGAAGGTGCCGCTGGCCGGGGAGGGCCGAAAGCCTCGCCTCCACCGGCGACACCGAGTCTACAAGCTGGTGGAGGACACGAAACACCGGCCCAAAGAAAACCTGGAGCTCATCCTCACTCAGTCTGTGGAGGGTAAGGCCAGACCTGAGGCACTACGCCTTAGGCTGCTCCTATTCGGTGTCAGGtttttctctctccccccccccccgccccagccCCGTCCCCGCCCCGTCCCTGCCCCGTCTATTTGCCcatgctttctctattttgtgGAGATAGCTCTATgtg---aaaagaaagtaataaaaagt---aCTGTGATGGTGACATTGATTTCCTTCTTGAAAATATAAAACCCTTAATGCT-GCAACACGA-----------TTTTAACTGGA-AGC------------------------AGAGGTCTGACAA----------------------------------------------------------TTTGTGTCACAGATAGTGAGTGAAATC-------------------------------------CTCTGATGGGACAACTTACT--------------------GCTCCTTTTGGGGAAGTCTACATTA------CTCAG---------------------------TCAGATCCTACA--------GAACCTAATTAGCAGTGTTTCACAGTGTCGTTCCTAGTAAATATGAC-----------CAACATTGTTTAGTCTTAGGAAGACTGAGCTCTGTGGGGAAAACAGTTATTTATCTCTTTGTTCATCTCCCTCTCCACAGttggtggtgctagggatcaaatttAGGGTCT-------------------------CTGTGTCT-----------------------------------------------TTCTTGTTCTCATTGGCAGAACTTGGAGTCCGGGGTGACCTGGTCTCGGTGAGGAAATCTTTGGGTCGTAACAAACTCCTTCCTCAGGGACTGGCTGTATACCCATCCCCTGAAAACAAGAAATTGTTTGAAGAGGAGAAACTGGTAAGCTT-----CCCTAGGAAGTCTTGGGAGACTCAAACTTTCAAGGCTTTTTCTAGCAACTTCCTTCACTTTAATATGTAATTTGAAAATGACATAGGGACTTGAAGATCAGAAATCCAAAATTCCAACCTGTAGCCTCCACAGTAAGAGTTTGATGTTACTTAACATGGGCTCATTtctcttttacttattttcatcTTGAACTTTTTTCCAGATGAGACAAGAAGGAAAATTAGAGAGGATACAGACCAAAGCAGGTGAGGCGGTAAGTAGAAACTTGTCA-------ACTAAAGAG------GCTGGACTGAGAATCTCCCTGATTTCTTTGAAGTC------TTG-CACAAACGAGGGTAGGGGAAAGAAGTGTTGTAGC---TGCCCTGTATAACTGGTATGGAGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCATGGGAAATCCTCACCCACTGGG--------------------TAAAGTGCTCTAGCTTATTGATGGAGTGCCCAGTCTAGGTACCAGGGACCCATGGAAAAATGTGAGGTGAG----CTGCTCTAT-GGAATATTTATAGACAAGATGG-----GGACAACATACACACATGAGAAGATAATTAGTAAACTGAAGGCGATA-------AGTCAT-----------------AATGGGTTTCGGGGT-------AGTTAGAAAGG------CCTTTTTTCCTTTGGGAGTAAATTAGGCCTCCTGAGGTTAGTAGGCTTTAAATAAGTCAG

a score=24467
s chr3            94446561 818 + 160039680 ACCTTTCCCGAA--CCTAAGACCCTGTGGCTTGAACTGTTTCCTCTCCTCTGACTCCAACT---------CCTCTTGA-----CCCACAGACAGTGAAGTTTCTGAGAAGCTGTCATCTAGAGGTGGGAATGAAGAACAATGTCAAATGGGAACTAAACCCTGAAATAGTTGCCCGCCATTTCTTCAAGAATGTGAGTGTT---------------CCCA--AACATTAGTATTTCCTTTG--AGTAAG-AGCCA-----TCTCTCCTTGGT-------AGAAG--------------------------------------------ACCCATGA---TTGAA-CTGTCCTCTATAAAATG--------------------------------GTTTTACTAGCTGGAGTTGGG--AGTTATTCTTGGTTGATTTGCAGGGAAAAGGGAGGAATGTGGCTCAGAACTTAAAGGTAGTTGCA-GATTT---TAAGGACTAAT--GGGAAAGGGCAGTTGAGTTTACTTTATCTC--TAGCTAGGAAGAACCTGGGAAT-ATGTGACTTACTGGAGAATCATTACTTTTGTGA-TGAAGCAGTATTAGTCTCAAG-ACCTGTTCTGTTTGTAAATTCACCACCCTCGCTGAGAAA-TAAGACTGAGCCTCTTCTGCTATCATCTGTGGGCATCTGTGCCCTTCCCTGACATCAACCAGAATCAGTTCCCCAGGTGTATTCAGTCCTACGTAGGAAATTATAGACCAGACTG-----TTACCTAGGGTGATCCAGGTTAGATTGTGCTGCAATCAAAAGGTTATCTGGTTGTTGGTTCTGTTTTCAGCTTGGTGTGGTGGTTGCCCCACATGCTCTGAGGCTGCCAGAGGAGCCTATCACTCGGTGGGGCGAGTACTGGTGTGATGTGACTGTAAGTGTTTACAGAAttttctattctttttaagat
s HiC_scaffold_1 139497330 920 - 233722169 ACTTGTCCTGAAACTCTTAGCCCTTG------gaattgtttcctttcctttgactCCGGCTAACTCAGTGTCTATTTATAATTCTTTCAGACAGTGAAATTTCTGAGAAGCTGTCATCTGGAAGTAGGAATGAGGAACAATGTCAGATGGGAGTTGAACTCTGAAATAGTTGCTCGCCACTTCTTCAAGAATGTgagttttgggctggggatttagctcagcggcataagcgcctgccttgcaagcaggcagtcatgagttcgatccccagtaccaataaaaagacaaaaaaaaaaaaagaatgtgagttTTCTTAAAACTTCACCATACCCATGGAGTTCGAAGCTGTC--CCAGAAAATGCCAAGGATTGGACACTTTGTTTGGAAGGGGGTGATTATCCAGATGGAGTTAGGAAAAAAATTCATGGTT--------GGGATGTGGGAGGGAGATGGCTAAGGAC-TGAGGGTAGTCACATGATTTAAATAAAGTCTGCTGGGGGAAAAGGT-GAtgctttccatttatttctgtgactagGGAGAGCCAGGAGATAATGTAACTTGCTGGGGAATAGTTACTTCTGTGAGTGAAGTGGTTTTGGTCTCAAGTGCCTTTTCTCTTTGTGAGTCTACTTCTCTTTCTGCAAAATTAAGACTTAAGTTTCTCTGCTACCACCTCTGGAAGTCTGTGCCTTCCCATGGGGCCAACCAGAGTAAACTCTCCAGTTTTATTCATCCCTGTTCAGGAAATTATAGAACCCTCTGTTTGCTTGCCCAAAGTGGCAGCCGTGAGAGTTGGCT-----------------TGGCTGATG-----TTTTACAGCTTGGTGTTGTTGTTGCCCCACATGCCCTGAAGTTACCAGAGGAGCCGATCACACAGTGGGGCGAGTACTGGTGTGAAGTGACGGTGAGTGTGT-CAGAAT----TGTTCCTTTTCTGAT

a score=16579
s chr3            94447679 840 + 160039680 cAGAATTTTGTTTTGATTGGGAGGAGAACATGTGGAGAGCTGGCTTGGGTGGTATGTTTTCTGCCTCGCTGATCTCTGGCTGTTCCT----GTTTTTAATGTCTGTTCAGGTAAATGGACTCGACACTGTGAGAGTTCCTATGTCCGTAGTGCTCTTTCAGAAGCCCAAGACGAAAAGATACAAGCACTGGTTAGCCCAGCAAGCTGCCAAGAGCGTGGCCCCCACCAACCCCCAGGCTG--TCTG-------------------AGTCAAAAG-----AGCCGTGGAGC--AGCCTGGCCAGCACTTGGA-GCTACCCCAGCTCTGAGCAGATGTGG-ATCATTGAGAACATGTGGACTCAGCAGACTGAGCTGCACATACGGGGCAGGTTCGCTGTGGTTGTCATCTC---CTTCAGTGGTCATCGTAGCCAGCTGTGTTGCCTCGCTCTGCAGGCAGT--------AGATGTAATAA----GCTGAATATCAGTGGCCAAAACAGTCTTCTTAGCCGTTCCATCTTTGGGAGAGTTGGTGGGAACAGGTGCAGGGGCCTAGCCACTAT-TCTGACAG---------TTGTTTTAT--TCTCAGCCAGAC--TGTGTCTTGTGCAG--------AAATGAAGAGCT----------------------------GCTTAACT--GGGCTTCAGTTGAC--GGGGCAGGATATCCAAGTAAGGTGTCTTGAGCCATGGAGGGCTG----TACAAAGGA-------GGAAAATATAGCCATTCTCTGTGTCCTACAGCTGCCATGAGCAGACTGCTCTGAACATAGCCAATTACATCTGCTCTTAGAGCTTTCTCTCTCCATGTG-GTTGATAG----------------------AGTGGATTCCACT--------AAGATCTGTATAAGGCCTAAGGATGATTGACAGAGAAAGTGAAGCTGGGATTAAAGATGCTTAAAAAG
s HiC_scaffold_1 139498229 950 - 233722169 CAGAATTGTTCCTTTTCTGATGGGCGAAAAT--------CAGCCTGAAGCGTTGAGATTCCTGT-TAGCTAATGCCTATCTGATCCCTaagatatttattttgtgttcAGGTAAATGGACTTGACACTGTGAGAGTTCCTATGTCTGTGGTGAACTTCGAGAAGCCCAAGACCAAGAGATACAAGTACTGGCTAGCCAAACAGGCTGCCAGGGGCATGGCCCCCATCAACTCCCAGTCTGAATCTGTTCACCCACCGAAACCATAAAGCAGAAGCAGGCGGCAGTAGAGCAAAAATGGGGCAGCACTTGACTGCACTCCCAGCTTTGAGCAAATGTGGAAGCTTAGAGACCAAATGGAAACATCCAACTGAACTGCAGGTAC-GGTTGGAATCCCCACATTTGCCATCTCTGTCTTCAGCAGTCGATATGTCTGGCTTTGTTG-----------GGGCAGTTGTGCTCAAGAAGAACCAATGTGACTGGATTCAAGCAGTCTAGATG--CCACTTAGCCTCTTC--CTCCGCTGGAATCCATTGCTACAAATGGATGAGAA-AGACACTGTGTCTAGTAGTACTTGGCTTGGTTTTGTCATCTAAACTCAACATTGTATTTCAAgcagaagttttaaaatgtggaatttggtttttttgttttttgtttttttaaggtgTAATTTAGGGCTTAAGTAGACTGGAGAAAGAACATTAAAGTGA---GTCTTTATCCATTTAAGTTTGCAGCTAAAAAAGAGGGAGTGGGAGAATATGTTAGGTTTGTATATCTCACAGTTGCTATTAGCAGATTACTCT-----CAGCTGATTGCCATTGGTCTTAAAACTCATTCTCATTAGATATATTGATAAAGTCATCAGTGTCAACAAGCACAGTGAGTTCTGCTTCTCTGAGGAGATCTGAATAAAGTCTAAGGGTGTGTGATGGA-AAAATGAACCTGAGATGAAAGACACTTAAGTAG

a score=39333
s chr3           94453162 961 + 160039680 CTGCTTCTTCAGGAAAACACCAAGTAGCGGATGATGCAGGTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGG---GGGGGGGCAGGATTAAGAGGCCG---CGGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGGCAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTG----GGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCT-GAGATCATTGACTTTTTCCTGGGTGCATCCCTAA-----AGGTTATGAAAATCATGCCAGTGCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGCCATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCC-GTGCCCAAGAAGCTCCTGATGATGACCGGTATAGATGACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACCTGACCCCCGACCTCTGGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAATACATGAACTAAGTCTgatagatagatagatagatagatagatag
s HiC_scaffold_1 55542946 878 - 233722169 ctttttcttcaa-aatacgcCAAATGGCGGATGATGCTGGTACAGCAGGAGGGCTTGGGGGCCTGGCGTTGAGAATAGAGAGTCCAGGCATGAGGGGCCAAAATGGAGAGTCAGACAGTTCTCTTGGAGACTTCAGGGGCATGAT--------------------------------------GGCTAGGGGTGAGGACAAGGAGTGAATCCCTGTTCCTGAGCTGAGCTGGCTGGCTGGCCAAGGACATGA---TCACCTCTCTGGAGGAAATTTCTGTCTTCTCCCTATCCATCAGGGGGTCTTGAGATGACTGACTTTTTCCTGGGTACGTTTCTAACAGTGAAGTTCTAAAAATCATGCCCTTGCAGAAGCAAACTGGTGCTGACCTACAGATGAGGTTCAAGGCATTTGTCACTATTGGGAACTACAATGGTCAAGTTTATCTGGTTGAAAAGTGCTCCTAGGAGATAGCCACTATCACCTGAGGGGTCATCATCCTGGCCAAGCTCTCAGTTGTTCCTGTGAAGAAAGGCTAATGTGGGAACAAGA----CAAAGCCCACATTGTCCCTTGCAAG--GTGACAGGCTGCTGTGGCTCAGTGTTGATGTGGCTGAT-CCTGCCCCCAGGAGCACAGGCATTGTGCTTGTGCCCTGTGCCCaggaagctgctgctgctgg----------------------------caggGGCTGCACTGCCACTTTGGGCAACTTCACCAAGGCCACCTTGGGTGCCATCTCCAAGACCTACAGTTACCTGATCCCTGACCTCTGGAAAGAGACTATGTTCACCAAGTCTCCTTACCAGGAATTCACTGACcatcttgtaaaaa-------------------aaaaaacaagctccAACAGTATCTCCAACA-TAGGGTTTTTACACAAGAAAAA---GTGAACgaaatctgttaaaaaaaaaaaaagctggggcgATAG

a score=47486
s chr3            94453162 946 + 160039680 CTGCTTCTTCAGGAAAACACCAAGTAGCGGATGATGCAGGTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGGGGGGGGGCAGGATTAAGAGGCCGCGGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGGCAGTGG---TCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCTGAGATCATTGACTTTTTCCTGGGTGCATCCCTAAAGG------TTATGAAAATCATGCCAGTGCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGCCATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCCGTGCCCAAGAAGCTCCTGATGATGACCGGTATAGATGACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACC----TGACCCCCGACCTCTGGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAG--AGTGTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAAT-ACATGAACTAAGTCTgatagatagataga
s HiC_scaffold_1 210115266 921 - 233722169 ctTCTTCCTTGAGGAAACACCAGATGGAGGATGACGCCATTGCAGCAGTAGGACCGGGAGGTTCCAGGGGGCC--------CATGCATGGGAGGCCGCAGTGGCTTCTG-----------------------------TGGAGGCTTCTGAAGTGGCCTTCGAGGCCGTGGAGCTTGTGGTGGTAAGGCCGAGGACAAGGAGTGGATTTCTGTCATCAAGCTGCACTGACTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGAAAGTTTTCTCTTCTCCCTACTCATCAAGGAGTCTGACACTATTGACGTTTTCCTGGGTGCATCCCTCAAAGATGAAGTCCTGAAGATCATGCCTGTGCAGAACCAAACTCGTGCTGGCCAGGGGACCAGACTCAAGGCATTTGTCGTCCCTGGGGAATACAAAAGTCACGTGGCTCTGGATTTAAAGTGTTCTAAGGAGGTAGCCACTGCCATTCGGGGGGCCATCATCCTGGACAAACTCTCCATTGCTCCTGAGAGGAGAGGCCACTGGGGAAACAAGATTGACAAGCCCCACACAGTCCCTTGCCAGC--TGCCAGGCCGCTGTGACTCTGTG-TGGTGTGTCTGATCCCCGAACCCAAAGGCACTGGGGTTGTCTCAGGCCTTATGCCCAAAGTGATGCTGCTCATAGCTGGTATTGATGACTGCTACACCTTTGCCTGGGACTGTACTGCTACTTTGGGCAATTTTGCTAAGG-CACCTTTGATGCCATCTCTAAGACCTACAGTTACCTACATGACTCCTGACCTCTAGAAAGAGACTGTGTTCACAAAGTCTCCCTACCAGGAATTCACTGACTGTCTTGTGAAAACCCACACTAGTCTCTGATCAAAGGACTCAAGCTCCAGCGGTAGGTACAACATAAGGGTTtttacacaagaaaaataaaatgaatgaaatctgaaaaaaaaaaaaa

a score=45450
s chr3            94453166 942 + 160039680 TTCTTCAGGAAAACACCAAGTAGCGGATGA---TGCAGGTGCAGCGGGAGGGCCGGGAGGACCGGGGGGGGGGGGGGGGGCAGGATTAAGAGGCCGCGGAGGATTCGGCAGCAGTCTTAGGGGGGCCACGGTCGTGGTCGAGGCTGTGG-----------CAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCTGAGATCATTGACTTTTTCCTGGGTGCATCCCTAAAGGTTA------TGAAAATCATGCCAGTGCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGCCATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCCGTGCCCAAGAAGCTCCTGATGATGACCGGTATAGATGACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACCTGACCCCCGACCTCTGGAAAGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGT----GTTCAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAAT--ACATGAACTAAGTCTgatagatagataga
s HiC_scaffold_1 232171284 908 - 233722169 TTCCTCGGGGAAACTCCAAATGGCAGATGAGGCTGCTGGTGCAGCGGAAGGCCTCCGAGACCCTGGGGACC---------CAGGCATGGGAAACCGCTGCAGCTTCCGAGGAGGTTTCGGACGGA----AGTAGCCTTCGAGGCCGTGAGGTGGCAGGGCCAGGGGCTGAGGCCACGGAGCTCGTGGCGGTAAGGCCAAGGACACGGAGTAGATTCCTGTCACCAAGCTGAGCTGGCTAGTCAAGGGCATGAAGATCAAGTCCCTGGAAGCCATCCA--GGGACTCCTTAGCCATCAAAGAGTCTGAGATTATTGACTTTT-CCTGGGCGCATCCCTAAAGGATGAAGTCTTAAAGATCATGCCTGTACATAAGCAAACTCGTGCTGGTCAGTGGGCCAGGTGCAAGGCATTTGTCGCCACTGGGGACCACAACGGTCACATTGGTCTGGGTGTA------------------GCCACTGCCATTCGCGGGGCCATCATCCTGGCCAAGGTTTCCATTGCTCCTGTGCGGAGAGGCTACTGGGGGAACAAGATTGGCAAACCCCACATAGTCCCTTGCAAG-----------------------GTGACAGTGCGTCTGATCCCTGCCCCGGGAGGCACTGGCATTGTCTCAGC-CCTGTGCC-AAGAAGCTGCTGCTGATGGCTGGTACTGATGACTGCTACACCT-GGCCAGAGGCTGTACTGCTACTCTGGGCAACTTTGCTAAGGCCACCTTTGACGCCATCTCCAAGACCTACAGCTACCTGACCCCTGACCTCTGGAAAGAGACTGTGTTCACAAAGTCTCCCTACCAAGAATTCACCCACCATCTTGAAAAAACTCACACTAGAGTCTCCATCCAAAGGATTCAAGCTCCAACAGTAGCTACAACATAAGGGTTTTtacacaaggaaaataaaaatgaatgaaattcgaaaataaaataaa

a score=16724
s chr3            94453294 799 + 160039680 TCGTGGTCGAGGCTGTGGCAGTGGTCGATGCTGTGGGGCTCATGGAGGTAAAGCTGAAGACAAGGAGTGGATCCCTGTCACCAAGCTGGGCCATCTGGTTAAGGACATGAAGATCAAGTCCTTGGAGGAGATCTACCTGTTCTCCCTGCCCATTAAGAAGTCTGAGATCATTGACTTTTTCCTGGGTGCATCCCTAAAGGTTATGAAAATCATGCCAGTGCAGAAGCAGACTTCAGCTGGCCAGCGGACCAGGTTCAAGGCATTGGTCACTATTGGGGACTAACGTGGTCACGTTAATCTTGGTGTTAAGTGCTCTAAGGAGGTTGCCACTGC--CATCCGAGGGGCCATCATCTTGGTCAAGCTTTCCATCGTCTCTGTGTGGAGAGGCTACTGGGGGAACAAGATTGGCAAGCCCCACACTGTTCCATACAAGCCGTGACAGGCCACTGTGGCTCTGTGCTAGTGCGTCTCATCCCTGCCCCCAGAGGCACTGGCATTGTCTCTGCTCCCGTGCCCAAGAAGC---------TCCTGATGATGACCGGTATAGATG------ACTGTTACACTTCAACCAGAGGCTGCACTGCCACCTTGGGCAACTTTGCCAAGGCCACCTTTGATGCCATCTCCAAGACTTACAGCTACCTGACCCCCGACCTCTGGAA----AGAAACTGTCTTCACCAAGTCTCCTTATCAGGAATTCACTGATCATCTTGTGAAAACCCACACCAGAGTGTT----CAGAGGACCCAGGCTCCAGCTGTGGCTACCACACTAGGGTTTTTATACAAGATAAATACATGAACTAAGTC
s HiC_scaffold_1 114410643 753 - 233722169 TCAGGGTCAAGGCTATGGTCAGAGCCAAGGTTGCCCAGCTCCCTGGGACCAGGCTGAGGC--ATTGGTGGCTGTGCATCTCTGCGTCAGGCTGCTGGGTTGAACATAGGAAGAGCAAGTCCCTGGAGGAGAGCTGCCT-TTCCCCCTGCCCATGAAGGAGTCAG----CATTGGCTTTTTCATGGGGCCATTTGTCAAG-------ACGTTTTGCCTGCATAAATGCAGACACATTCTGGTCCATAGAGCAGGTGT---------GCTACCATCAGGGACAATGCTGGTTGTGTGGGTCAGGATGTTCATTCTT----GGAG--TACCCTTGCTGCATGCTAGGGTCCATTAAGGTGGTTAC-TTTGCCACCATCTCCATGCAG-GAGAGTGCTGCAGGAAGCAGCTGGGCAGGCCTCCCAGTGTG--ATGTAGG--GTGACTGGCTGCTGCAGCTCTGTGTTGGTG-GCCTCCTCCCTGCTCCCAGAGGCACTAGCATAGTCTGGGTCCCTGGGCCCCAGAAGCTGCCGCCAGTGCTGGTGTCCACTGGTGCTGCTGTCCACCACTGTTACACCTGCACTAG---------TGCTGCCCT--GCAGTTTCACCAAGGCTGCA-TTGATTCTGT-TGCTAGACATGCAGCTGTCTCATTTCTGACCTCTGGAAGAACAGACAGTGTTTGGA------------ATTGGGAATTCACTGACCAGGGCCTGCACACCCA-ACTAGAGTTTCCACACAGAGGACTCAGGCTCTAA-TGT-GCGTCCGTG-TAGTGTTtttgtacaagaaaaa------aattaaatc

a score=54469
s chr3            94464277 3596 + 160039680 CCTGTTCCCTTGCCCTTTTTGCCACTGCAAGTGAGGGCAGCTAGGAGCAAGGGA---------AAACAAATAACAC----------TCAGCCTGTGCTTCTGTTGCCATGGTGATGTCGACACGGGAAACACAGGAGAGCTCCTTCATACACTGGAGTCAGCTGACTGGAGAGGCCAAAGACTGAGGCAACAAACCTGAAAGATGCGCGCGCGcactcacacacacacacacacacacacacacacacaGCTCCTAAACATGCAAAGGGCTTCA-TGCTACCATCTGAACCATCTTTCAGCCTCTTAGCCAGACATCAAATAGATGA-CTGGCTTGCTCCTAAA-GTCCCCAAA-ACAAAGTCCTCTACCTCCCAGCCATC-----------TGTTACAACACTCATGGGCCT-CTTGAGTTTTCAGTGTCTGTCCATCTGTCTTGATGTCCTTCCAGCCCAATTTTTCTCACTATTGCGTCTATGGGAAGCAAAGAAAATCACCACCTGACATTTGAGAAGGTCAC------AGGATGCTGGAGTGAGGACCTGCTTGTTTTCAGCCCGCCACAACTAAATGGCTTGCTCAGTACCCCC--------CAACTCTGTTTGTAGTTTGATATGTGACCAGAGTGGGAA----CAGTCCCTGGCACCCCAGACCCCTGACCACCTCCAGGAGAAAAGGAGTCAGGCACAGCAGGCTGCCATGCACTGAGCTCTCCCCCTTTCAAGTGAAAATAAG-AGAGAAGGCAGGCAGAT---CTGGGTTTAATCAGTATCTT-AAAGGCCCCTGATA----GGAGAAGGCCCACACAGCTTGGAAATCCACACTGGTGGCAATGCTGCTCTCAGGGCTCCAGATGACCCTGCAAAACAGAAGTGGTTTCACTAGAttaggagtggggccttaggtggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcagaaaaaaaaaaAAAAAAAAGAGTGAGGCCTTTCCCACCTCACATTAAGaaaaaacaaagaaataaaaaacaaacaaacaaacaaacaacaaaacaaaaaaaaaacaacaaaaaaaacCTCTTCAGCCTTCAGAATGGCTTTAGGAACTATTCTGCCTGTGGAG-GGAGGAGGAGCTAAAACACACTATGGCCTTAAGGGCTAATCTGATGTA------------CAAGGTGGTTGGAAGACTGTAGGAGGGAATTCCTCACCTCT-AGGGCTCAGGAAAAGG---------------------ACTTGGTACTGAACCCCCCC--TTCCCAGCCC--CCGCACC--TCAGGACACCTCCCATATCCATTTCCCAATCCACCTCACTAGACCA-AAGACTCCTGTCAGTGACAC---AGAGACCAATTCCAGGCCTCTGATCACAGCCTCTATCCCCCTAGAC---TGTCAGGAAAATGGCCTACTGCTACCACACTGCTCTGCTGTTTCTCCACTTGCATTCTTTCACAGCCTGGATCCATAAACCCGTGCTGCTTTTCACGAGAGTGAGGC---------------------TAACACCCACCCAAAGCTTGATTCCTTCTGGCTTCTCCCAGCAGCTGAGCATTGTGGCTTTGCTAATTAGGTTCCTTTCTTCTCTTTAATTAGCTGCATGTGAATTCTGCTGGGAAGTCTTGGATCCGTGAAATAGTCTGGGACGAAAATCAGAACAACGCAATCATCAATGCTGAAGGGGAAAGCCTGG---GCGACAGCTTACTCTGCTAAAACATCGGA------------------TGCTTTG-----------TCCTAGCAGGGCTCACTGGTGGTCCCCACTTTACAACACAATCTCGGTGCCTGTACTGTCCCTGGCAGCCATCCCCATGAGTGCCAGGAAACCATCCTAGGTAAGGCCTGTGCATGTTGC-CCAGGCTTTCTGCTCTTGGCCCACCTGAAGCTCCGGGAGCCACCAAGGCCTCCCAGATC--CTGAGTGTTCTGCCCCTGGTCCATTTAGGA------------------------CCTGCCCTCCACTCAGTTTGCCA--------------------TGCAGGCCTTTTCAGAGAACGCCCTCTCCTGGGAGAGCCAGGCTC-ACAGCGTGATGACGGAAGATGATTTTTACACCA-GGAAGAATGTGAGTCACAGT--GCATCTGCTGTGGCAGGGAAGGCCTGCTCAGAATACTGTGGGC--------------------TCCCAGGGTTAACTGCACCCAAGACACCAGCCA------CAGCTCCCCACTCTATATTGTTTGACCGGAAGCCATCTCTG-CAGCCAAGTCcattaaaatcacctggggagtcttcagaaccttggctgcccccccccacccccttccagcccccagctcccccccccagactaattaaataaaaatctccagagaccaggcctgaacatcagcatt--ttttaaaagctccccaggtggttttagtgggcagcttgggtcagaaaccactTTGGGATCCCCATAGACCATGGCTGCCTGACT-CTCCTTTGGGAATCTCAAAATTCTTAGTCCTCACCAAGAG-AAGTCCTGCCCCAGTGCTGCTCTGGCCTCATTTTGAGAAAAAAAGACAGGAGAATGAAAAGGCTTTCAAAAAATAGCTCCTATGAGGGACATCAGGTGAAAATGGAACCCAGACTCCACAAAAAGTCCCGG-------GCTTGTCCAACTCTAGATCCCCAATTCTGCTTCTTGCACAGACATGTGGGACACCCCAATGCCACTGTACTCACGTGCAGCAAATTCAAGAATGTTGTCCGGTCTTTTCAGAAACATTTCTCTGTAAAACATTAAAaggagaaggagaaggagggaggaaggagcaggaggaggaggaggaggaggaggagATAAATGGGGGTCCTGCAGGTTGCAGCCACTGCCCCATCTTGCTCTTTAGGAAGCAATTTAATGACAGGCCTCCCCTTCTAGAAGTCAATAGATCAGGAGATCTTAGACAAAAACATG------------------------AGGATCAAAACA---------ATGGAATGGCTAGGCATGGTGCA---cactcaggagacatg-----ggcaggtggatc-------------------tctgtgttgtt--------------------caggcc---------agcct--ggtctacacagtgagaccctgtctca-----------------aaagaacataaACCAAGCATTCAAACAGCAGTAAACAAACCTAAGCCATATTCATTCCACAGAGGAGCTGCGG--AGAGGCAGGTG------GGGCTTTCTCATCTAACACTTTCATACACTCAGGACCAAGCAAATG--------------TGAAGTGTCTTCTAAGTCCTCAAGAGGCCCATGCCTTATGGACAGAATGCAGCCCTGTGATGGTCTGAGGAAGTTTATCCGTGGATTTCCCGAGGCCAGGGAGACAATAAACAACCTAAAAAACATTTTTTAAAGGACTTCAAATGGGTTATTAGCTCTGCTGCACAGCAGACAGACATGAAGGTAATGGCA----AAGTCTCAATGCAGCCAGGGTACTGGAAATGTCTGATAGTCCAGAAAGTTTCACAGTTCATAAAACATGTGTACTAATACTATCTCACTTTATGACATCCCTGTGATA--------ATTGTATTCCTGTTTTGCTTATAAAGAAACCAAACATC--------------------------------------------Actgggcgtggtggtgcacgcctttaat-------------accagcacttgggaggcagaagcaggcaaatttc--tgagttcgaggagagcctggtctacagagtgagttccaggacagccagggctcagggctacaacagagaaaccctgtcatgaaaaaacaaaaagaaagaaagaaagaaaggaag
s HiC_scaffold_1 139513491 3507 - 233722169 CCTGTTTTGTTGCCCTTTTTACTATCCTAGGTGAGAGCAGCTGTGAACCAGGCAGGcagagacaaaaggaaaacacgACCCCTGCGCTGGGCTGTGCTTCTGTTGCTATGGTGA------CACGTGATACACAGGTGAG-----------AGCGCAGCCAATGGACTGTAGAGGCCAGAGACAG-------------GAAAGAGCCCCAC----------------------------------------CTCCCAGCCCTGGAAAGGACTTCACTGAAGCCAACGGGCCCATTTCCCTTCTTCTTAGtagaaaatcaaaaggatgagCAGCCTTGTCCCTAAAAGTCCCCAAGGACAAAGTCCAGGATCTCTGAGTCACCATTAGGTGACCTTTCACAATATGTATGACCCTGAGTGACTTTCCCATCTTTAACCtaattctcttttgtctttcctGCCCAACTCCCTTTCCCATGGCTTCTGTAGAAATAAAAGTTGAGCATCACCTTAAACTCTGTACAGCCAcccagaagggaagagaaaatatgAACTTGCTTGTTTCTGCCCCACCACAACCCACTGTGGTCCTTGGAGGTCCCACTGTTTTCTGCCTTAGTcctggttctgggtgtggctgcagtGGGGAACCCCCCTCCCTAATATCTCAGGCAC-TGGCCACC-----AGGGAAGTGACTCAAGCA------------------GGAGTCCCCCCCTCCCTCAATGAGACAAGGCAGAGAAAGCAggaagagatgctatttttaatgAGGATCTTTAAAAGCCTTTGCCATGGCAGACAGAACCCAGGCAGCCTAGAAACCCACACAGCTGG-------GCTCTCGTGCATCCAGATGACCCTGCAAAACAGAAATGGTTCTGCTAAATTAGAAG-GGTGTCTT-----------------------------------------------------------------------------------------------------------------CTTCCcatctcaaactaa------------------------------------------------aaaaaaaatcca----------------agcctTCAAAATGGTTTCAGGAACCATCCTCCCTGCACAGCATGGGATGCATTAGGGCACATCCTGG--TTAAAGGTGAGAGGAATGGAGAGCACCCTACCCAACATGC-------ACCCAGGGAAACCACTTCATTCCTCTGAAGCCCCAGGGATAGGCTGTGGGCAGGACTATCCTCCACCTGGTGCCAAACCCCCTCCTTTCTCTGCCATGCTGTACCAGTCTGGGT---TTCCATTTC----TCCTAATCCAAATCACCAGACAGGAAGATCCCTGCCACTGGCGTGCTAGAGA--GTTTCTGGGCCTCCTCTT-CAGTCCCTAATCCTCTAAAACTGTGTCaggaaaactaaaagctttcatgAAACTCCTCTTTGGCTTCTCCACTTGCTTTCTTTCACACCCCAGACCAGTAAGC---TGGTTCTTTTCTCAGGAGTGAAGCCACACCATGTGTAAGTAAAGTTAACACCTACCCGAGCTTGGGTTCCGTCTGGTCTCTCCCaacagctgagcatggtgattTTGCTAATTAagtcattttcttgtctttaattAGCTGCATGTAAATCTTGTTGGGAAGTGTTGGATTTGTGAAATAGTCTGGGatataaatcaaaaagaaaaaatcatctaTACTCAAGAGAAAGACTAGGAGGGAGGCAGCTTGCTCTGCTAAAAAGTTAGAATGGCTTGTTTCTCTGACTGCTATGAATGCCTCACTTCATAGCATGAGTGACACATGGCCCCCAC----CAGAACGGCTCCGG------------ACGTGGCAGC--TCCT----AGTCCCAGGAAGGCTCACACAGGATGCCCCTGCCACACTGCACCATGCCATTTGCTAGCTGCTTGC-TGACACTCAGGGAGCCATCAAGGGCTGGGGGATTGTCTGGGTTTTCTGTTCCAGGCCCATCTTGAGGTCTCAATAAATGCCAACGATTATTCTGATCTCCACTTGGCTTGCCAGCGCCTCCTCTGAAGTACTGTGCAGCCCTCTCTTGAGAATACCCTC-CAGAGGAGAACCAGGCTCTGCGGCATGATGACAGAAGAGGGTTTTCATACAACTGGCAAATATGAGTCACAGGCAGCATCTGCTGTGGCAGCAAAGACAGACTTAGATTGTTAGAAGCAGTTGGAGGAGACAAATAACTCCCAGCATTCACTGCACCCAAGAAATTGGCTAGCCCAACGCCTTTCCTCTAAATACCATT-GACCTTAAGCCCTCTTGGGCAGCTGTGTCTACTAA--TCACCTAGAGAGCCTTTAAAACCATGAATG--------------------------GGGGCCTCACCCCAGACTAATTAAGTAAAAATCTCTAGGGGTGGGACTTGAGCGTTGGAATCGGTTTTAAAAGCTGCCCAGGTGATTCTAATGTACAGCTAGGGTCGGAAA------------------------GAGCTGCTAGCCTGTTCCTTTCAGAATCTCAAAATTCTCAATCCTCTCCAAGAGGAAGTTCTGGCTCATTTTCTCTCTGGCATCATTTTGAAGAATCAA--CAGTGGAGCAACAATGCCTTCTGAAA-CAGCTCCCTTGAGGGATGTCAGGTAGA---GGGCCCCAGGCACAGCAGGGAACTTCTGCCAGACTACCAGCCATACCCTCGCCTGGCGGTACCATACCCTGCACGGA-----------------TGCTGCCACGCTCACCTGCAGCAAATTCTAGGACGTTGTCTGGTCTTTTCAGGAACATCTCTCTGGAAAACATTAA--------------------GGGACAGGTTGGGAGGGGAAGCAGGCTGGAGGGCAGA--------------------TGTAGCCACTGCTTGGGTCTGCGTCTCCCCA--CAGATTAAT-----GTGTACCACACTCAGAGCCAGTAACCCAGGGCACCTTGGACAAAGACCTTTTCTTCATAAGTTTTCTTCAACTCAGGAGCAAAACATCTTGAATGACAGTAAGTCGAGGCTTTGTTCATTTCACAAAAGTGTTGTGCTTTACTCAGGTGGGCCATGTCATTCCAAAAGCTattatctattattattattattattttatgaggCAGTCCTGGGGCATTagcctagggcctttgcactgagctacattcccagcctttttttcctcactaaattgcctgggctgggc--tcaaa------tttatgatcct---cctgcttcagtctcctgaat-gctaggattacaggcgtgtgccaccatgcctggcttcacaaACATTGTCACAAAGCCAGTGTCAAGCCAGGGGCAGGAAGCTAACCTGAAGAGCAT----GGTCCTCAGGGGGCTTGTG-TGTGTCGACATAG-GCAATTTCACAATGTGGTAAGGCTAGTTAACCTTGAATTCTAATGAAGAGGAAAGGGAATACACAAA----------------GATGAACTTCAGAT-AGTTACTGGCACTgcactatcacaca------------taataacacCCCACGTCCCAGTGC---------ACTGAAAATGTCTTACATCCCCTCAAGTTTTATGGCTTATAAAATATACTCACAAGTATTATCTCACTTTATAACATCTCTGTGAGATGGCAGTTACTGTGGTCTCATATCATATATGAAGAAACCAAGCCTCCAAAGGTTAATCATTTGCCCAAATTCATAAAGACAGCAAATAAAGCTAGGCATGCGGGTgtactcctataatctcagcacataaaaccagcacttgagaggctgaggcaggaggaccactgtgagtctgagatcagcctgaactatatagtgag-------------------------------------accctgtccc-aaaaaacaaaaacaaaaagatattaaaGGCAAG

a score=6212
s chr3            94467970 320 + 160039680 aGAGTAATTGTATTGAAAGGGGCCCTTG--TGATACAAATGGAATTCGACTAGCAAAAATAAAG-ATTGAAAGACAAGAGCATCCCAGGGCCAGGGATACAGCAAGACCAAACAAAACCCAGAGATGCAAACAGCCCTGTGTCCTGTGTGTGTGACTGCCTTGTGTCCTGGGTGTGACTGCCTTGGGGTTAGCAGCTGGGTTGTATCTGCTCTTATATCCCCAGGGTCCAGGAGAGCACTC-AGGGGTGTCTGCCTGGGCTCCCTGGGTTTAGGGAATAACTAGAAAGGC-----TGGCTGGTTGGCTTGCAGACATGCGGAGTGGAGG
s HiC_scaffold_1 139517384 266 - 233722169 AGAGCAGATGACTTTGAGCAGACCCTTGAGGGATGCACA-GGATTTCAGCAGGCAGGATTAAGGGATTAAGAGATGACAACATTCCAGAGCCAGAGA-ACAGCAA---CAGCCAGGCCCCAGAAATGGAAACAA--------------------------------------------TGCAT----GTTAGCACCTGGGTTGTGTCCACCTTAGTATCCCCAGAATTCAGGGGAGCCCTCAAAGGGTTCCTGTCTAGGCTCTATAAGTCTTAAGCATATCGAGGAAGTCCAGTGTGGCTGAATGG----------GGCAGTGTGGAGG

a score=28424
s chr3            94472043 2317 + 160039680 ttaaaaaaaaaaaaGTTTGTCTAAAGAAAGAGGCACACATAGTAATCCATTCATCTATTCCCAGCCACCTTTG--TAAAGTTCTTACTAGCTCCCCAATGCCAGCCTGTCAAGCCACCTACCTGAAGAAGCCGCTGATGAGCAGAGACACCTCTTTGTGGGTTCTCAAGTACTTTTCATTTGCGATCCGAGTCTGGATCTGGGGAGCAACAACCAGGAGTCAAGATCTAGTGAGACAGCTCCAGGATTCAACCCTCAAAGGACACGTTAAGTTGTGTGG-GGTGCGGGGG--------AGTGAACATAAGCCAGGTCTTTTCCTAGAGTGCTTGAAAGCTGTCTTCGGATTTTCTCTTGAGGTAACCTCATttcttttctcttctggaagaaattcatattgcctgggctgggctgga---------acttgctgaagttgg-ccttgaactctagatcctcttgccgctacctagggcgtgctagttaatgcaggtggggatgaggtgaaggggattgaaacccagtggtctgtgcatgcgaggcaagcactctgccaactaagctacacccACTGTCGCTTCTCTGGCCAGACCCCTATCTGGTTCGCCTTGCACTTTCAAGTGCCTGGAGGGTTGGGTTCA------------------CGGTCACTCCATCTAGTCCTCTGGCACTTAGCTGGGGGAACAGGCCCCGTGCCCCGTTCCCCTTTCTCGGGACCTTCCTCCCTGTTTAATGGACCTCAGACTTGAGGAGCTTCACTTTGATAGAAACGGGTTTTAGGCGACGCCGACTCACGCACCTTGAAATCTCGCAACTGCTCCAGTTGCTCCGGGTTCAGCGTTCCGGGATCCGGCCCCA-----CTATCCCATGGCCTCTGGTCTCCATCAAGCACACTCGGTTGTCTAGGCGACAAGCCGCCCAGTAACAAAGACCCGCCCCG--------CTGCCCGCCCCGCCCCT--TTATAAAACCAATCCTTTCC--AGGCAAGGAAGGCCTAGTCGCACCGAGGGAAGCAAGGGCAATCTAGCTAAATCAACTTGGACTTGG-AGACTTCA----GGGGAGTACTTTTCTCAGACTTAAAGACTGAGCTGAATTGTATATGAAATGAGCCTTTCTTCTTGATCCCACTCGCCCGACCTCAAATCGTGCATTTTCTTAG--CTAGA--GGAAAACCACTGAAGAGGTTCCTAGCTCAGGGTCCCCCAGAACCCAGCTCCCAACTTGGGCAGGCACTGA------CTGTGCTTGCCGAAAGAAATCCAGGCTTCTTCTCTTC-----------------------------------------------------------------------------------------------------------------CCTCTGGCGCAGA-----------AGCCGAGCATTCCATCTGTTCTGTAG-----ACAGACAGTAGATATTGAAGTCCTGGATTCCTAAAATATGAAATCACCCCAGAGCATGGTGGGATCCAAGCTCTGTAATTCTCAAACTCAGACTGCGGGACCTGG----GTGGTACTCGGGCGGAAGTTCCCTTCTTGGAATGACTTCCTC-------------------------------------------------------GGGT------------------------------------------------------------------AGATTAA----------TTTTCTCTTCACCTTAGGCTCCTCATAAATTGTAAATTATTTCTCTCACTTTCAACTGAATTTAAAAAG-GAAAGGAAACTAATTGGCTGCAAGATTTGTTTTTCTAGTATCT-ATTTAGAAGGGTAAATGAAACATAAAACCACAGTTCTTAAAATAGTTGCCTGGAAAGGGCAGGAGCCTGTCTGTCAacacacacacacacacacacacacacacacacacacacacacacacacaAGCTTTCCCTGTTCAGAAATATGGTGCCCAGCAGAGACCTTCAGAGAGG---------------CATCAGAGGAG------TTTGGGATTCATGAACAATCCCCACCCCCAATCCTGCCCCATGCCCAAGCCAAGACACAGCATGAGAAAACAGCTAAA----------TGATATGTCAAGGAGGGATCTCTCTGTGATCTGAAGGCCTC---------CACCAGAGCAGCAGAAA-CAGAAACAGCGTTAACAATCCCAAGCCCATAAGCAGGTGAATCAGACTGTGGCTATAAGCCTCTTCCTAGAGGCCCATATGGGTTAGCAATCGTTTGGATTGTTTATCTGTTTTTTTTTTAGGCGATCGAGTTAATAGTGAGGGAGATAAGCTGCCATCTGCCAGAAGCACTGTTTCACCAGCAAGAGCAGAGGTTACTAAAGGGTGATAGTTTCTGTTGGA-------GGGAGAGACTAAGATAAAATCCATATAGACTTGTAGCTAGTGTGTCTGGCACAGTCTCTC--AGTTCCCAAATGcttgaaatgcggctatgttagatatgccagacatttaacatgcactctggatcctgaagacttaatggaag-----aaaataatgcaaactgtttcaataactttatatgcattgcatgttcaaatagtgttttgaaaatagtaggttaaataaa
s HiC_scaffold_1 139520525 2390 - 233722169 TTAGAAACAACAGGGAGCGTTGAAAAAAAGGGCAACGA---------TATTCATCTACCCCCAGCAAGATCTGATGAAACTGTCCACCA--TGTCCAAGGTTAGTCTGGAAAATCACCGACCTGAAGAAACCACTTAGGAGCAACTCCACTTCCTTGTGGGTCCTCAGGTACCTTTCGTTAGCAATCCGAGTCTGGATCTGCGGGGCAAGAGCAAAGGGTCAGGCT--------------------------CCTTGAGGAGCCCGCTGCGGGGTGAGGAAGGACGGGAGAATCGCCCAGCGCGGTTAACCCGGGTCTTTTCCCGGAGTGCT----AACCGCCTAAG-------TCGCCAGG---CTCCGCTCCACTTCTCTCCCGA----------------CGGGGCCAGGTCAGACGTAGGGGCCTTCACTGAGGTCGGATCCCGAACCGAAGTTCTCGGTGCTGTTACATA-----------CTGATGTA----------------------------------------------------------TCTGGCAGC-AATTTCCGCCCCTTTCTGCATTCCTGCTTTGAT----------TTTTTCCTGCACTTTTAGTCGCCCGCCGAGTGGGGCCGAGAAGCCCGAAGATCTGAGCGGTCTCCCCG--GAGCCCTCCTCCATCT------GGGCACGGGTCCCCGGCCC---TCTCCTCTCCCGG--CCCTCCTCGCTGTCTGA-GGACCCC-GTCCTGGCGAGCAGTA-TTTCCTGGAGGCGGGCGTGGGGCG-CACGGATTCACGCACCTTGAAATTTCGCAGCTGTTCCAGCTGCTCGGGATTCAGCAACCCACGGTCGGGTCCCAGAGCCGGATCCCGCGGC-----GTCGCCATCGTGC---CGCGGTCGTCACGGCGACCGGACAGGGGCCAAGGAGGCCCCGCCCCAAGCCCCGCCCACCCAGCCAGCCCCTGCCTGCAAACCCCAGAATTCTAGGAGACAATCTGGGCCTGGCTCTGC-------AGCTGAGGC------GTGAAATTGAGGCGGCCTCGGCAGGATACAGAGTGGGAAATGATTT---------------CTCAATTTAATTATGTAAGCAATGAGCCTTCCTCATTGGCCGTG-----CCTAcctcaaataatat-ttttcttagccCTAGACTAGAACAAAACAGGAAGGTTTCCTAAGACAAGGTCTCCAAGATGTTGGTTCCCTTTCTGGCCAGACGTGGAGGAATCCTGGAGTTG-AAAACCGAATCCAAGCTTTTTTCCTTCTCaacctacttcttcttcttcttctttttcttcttttttttttttttttttttttttttttttttttttttatcggtaccggggattacgacggcctgcttgcaaggcaggtgcttatgccgctgagctaaatccccagccccgcttctCAACC-TTCTGTAGCTTTTGTGGACATTTCTCAGTGGAGTCTTGGAGCCTT--AACATGAAAGCA-CCCAGAGTACACCACAACCGAA---CTGT----------CTCAGGATGCTGGGAAAGGCAGCGGGGCATCCTGGCagaattt--ctttttgtactgactttttttcttgttttgttttggttagttggttgatttttgtttgttcttttgtttgagacagggtcttgctgtgtagtccaggctggtcttgaactcactgaagtccttctgcctcagcctcccagtgctgaaattacTGGTGTGCGTTTTTCTCTTCACCTTGTACTCCTCATAAGTTCTAAATTATTTTCCCCAC-ACCGATTAAAtatggaaggaaaaagggaattaGT---CTTCAAGGTCTATTCTTCTAGGTTCCAATTAAGAAAGGCAAAGGAAACATAAAGCCAGAGAGCCAAAAATAGCAAACCTGAAAGGGCAGGAGCCTGTCtgtcaatacacacacacacacacacacacacacacacacacacacacacacactgagctcCCACGCCCACAGATGTCACACCCAGCAGACGCCTTCTGAGGGGATGGAACGGGAAACCCAAAACGGGGGCTGCCTTTTTAGATTTCTGAACAGT----GTCCCCaag--------------gagcaaagaaataactTGAGAAACAAACTCAGCACCAGCCCTTGGGATAGAGGGAAGGGGTCCGTGAAAGGTCT----GCCTCTATTTTTCTCAGCAAAGACTGAGAAGTCAGGGGAAATGCTGATGGTTCCCAGCGCAAAGAAAGGGG--TCAA-----------------CTGCCTGGAACCTCTTCCAAGTTAGTAACCATTTTGGTTGGTTGGCTGTTTTT--------CAGGAGCGTCGAT----AGAGAGATAAGCAGC---------------------------CAGGACCAGAGGTTAACCAGACCTGACTCTTCCCACCCTACACACCCCAAAGAAGTGAACGAAGAAGCCCTGGGGCTGCACAAGTGGTGTGGTTGCCACGAGCCCCCATAGTTCTCAAACATCCAGAACACAGCTGTGCTAGATGTACTGGAAATGTAAAATAGACTCCGTATGTTGAAGACTTAGTGAAAAGGTGTAGAATAACTCA-------TTAATAACTTGGTATTGAT--CATGTTTACATAGTGTTTTGGACATAGCagtttaaataaa

a score=61166
s chr3            94475869 2242 + 160039680 ctctccagcaccTTAAAGTCAGTAATTTTTTTTAATACATAGCAACTTAGCTTTGGCTGAAGAGTAATAGGAAAGAGTGAGCTTTGGAA----------AAATCCCCTGGGGGAATTACAGCCTGAAGCCTCCTTTCCCCAGAAAGAGGG--TCCCAAGGATGGGCTTCTGAGTCACAGAGCT----CCTTAGTCGTTACCTCACAGAG-CTGCCATCCCCTCAGAGTGACAGAACTTCAGAGACA--TACCCATAGCCACTCAGCTAGGAGAGT--------------------CTCCGGAGTACC---CTCTACCCTC--TCTCAGACCG-------TACCAATATAGACTGGACACTA-----AGCAAAGGATTGAAAATTCTTTGCTGACTCTAGCTCTCTCCA-AGTTGCTGCCTGGGAAAAGGAACAAGAGGGGTTCATTGAAATTCATTTTTGTGAATGTTTAATATTTCGATTAATGTGATTAGGCTCGAGCCTGAATGGGCAGCAGGGCGGCAGATCTGCTGAGAAGACACAGGGTAATGAGATCAGTGGGCCTGTCAGCGGGGTCT-------CCCACATTCACAGGGCGTGATCTGTTTAGCGTCTCCATAAATGTCAAGATCAGATTAGAAGGCAAGAATGGAGAAGTGGGGGTGGGGCAGGTGAATGGAAAGTTACTGTGGAGAATTACAGCTTTCAACTTCCTGGTCCCCTGGCACTCCCA-TGGCATCTCCAGGCCACTCAGTGTGGAGTCTCCTATGACCTCACCCTCCCAACACATTTTAGGGCACCCTACTGGGAGGGCCTGAGCATCTGCATGATGAAGTGTAACCAAGGCTCTGCACATACATTCAC---TTCACTCACATATATATTTATATACACCTCACCGAATCTAGCTTCAGGCTACAGAGAGCCAGATTAAAGGAGTCAGAAGCAGTCAGTAGGGAACAGGGCAGTAGCAGGAAGCACAAAGTCTTCCTCAATGTTTCAGTGAGCACAGAGGTAAAGAAAGGCCAGGTTCA--CATCAGT-TCATTCCTGCAAGGCTGGGTGTGGGCATTCAGTGCCTGACCTCAGGCCCCACCTTGCCCAGGCTGGAATCTT-ACGAAGGTGtttctagctgtgtgatcttggcgagttatttaatcactctgtg---tcttagtttct-----------------tgatccatatcataaag----ggtggtc----------------tagCACATTTGGGACAATCCCTAGGATGTGGCAG-----TGTTATTTCAGTTTCAGAGGAGGAACCTGCTTGCTGTGATAACTCAGGAATGGAGGCCTCTGGGATGCATCTGGGA---GTCTCA--------------------GAGACAGCTGCTCCACCCTGG---GCAGAAGGGGAAG-----CAGG--GTGTTCTATGGAAGCTGCCAGTGGAGAATGGATGGAT-----GGTGAGCCAGGATTGCTATCACAGAGAGCTGATGCCAACAGA-------------------------------CACATGGGGCA-GGTATGGGGCTGGAGCACAGAGGGCCAACCT-------------GGAACATAC-AACCAGGTTTAGAAGTATAACTGTTTTGGAGAAAAATAGTTTC----TAttttttttttttttttttttttGCCTCCTTTCATCTGACTCTGAGATCTACTCTAGGAACCCAACCAAAGGAAGCAA---AGGAAGGAG-AAATGGGGTACTTTGCCCTCAAGGGGAGCCTGGCATCTGTGCCTGTTCCCACAGAAGGAATCAAGATTCTCTACTTGTCACAGGTTCTTTac-------atttgataagcacctactatgtgtaagcaagacatcatgctagacgctgTG--------------------TGCAGTCTTGGTCTACAAGGATAATAC---GAGAGC---TGCCACCAGCCGCTGCCTCCCTGCCCAAGCACTCATACACACAACACCCCCAGAGAGAAGGAAGGGGGTGTCTGAAAATGCCAGACTGCTATAGCTTCCCTTGTTTCTTTTTCTGGAAAAGTATGCAG-ACTCTCTCTGCACTCACTCCCACCAGCTCTCTCCTTTTCCACACCCGTTCAAATTTTTTTACTCTCCATCTCACTTT-TGCTGTTTTCCTCCTAGACCCTG-TGGCTGCTTCCTTCCTCATCTACACCTCCCTGTCTGCCCTTCAACCTG-CCTGACTGATCTTTCTCATTTCTTTTCC--TTGTTTCCTTCCTTGGGTTCTCACTCTCAGACTCCCCAAAGGCCAGGCTGCCCTCTCCTCACCGCCCCCCCCCCCCCTCCCAGCTTCCATCTCCCGGGTCTGCTCTTCCTCTTCCAGCACCGGGGACAGCTCCAACCCCCGGAACAATGGACCCCACCCTAGGGCTCCTCTATAAATTCTCCATCTTCGTCTCTTGCCCAACTCCTGATTGG
s HiC_scaffold_1 139523746 2418 - 233722169 ctctctctctttaTAAAGTCAATAATCTTTTTTA-TATAGGACAGCTTAGATTTGAGAGCAGAGGAATAAGAATG--TGAGCTTGGGGATGGTGGAAAGAAGATATCTAGGAGGATTAGGCTTTGAAGCTACATTCCCTCCTGGAGAGGAACTCCCTAGAATGGTCT-CTGAGGAATAGGGTCTCTACCCCAGACTTTATGTCATAGGGACCCCCTTTCCCATGGCCTAGAAAAACATGAGATATAGATACCCATGTCCATTCAGCCAGAAGGGCTGATGAGAGCTGTTCCTCTCCTCCTGAGACCTTGTCTCTCCCCTCATCCCCAGGCTGATGATACTTCCAATCTGA---GGGCACCAGAATGAGGGAAAAAGTAGAGATATTTTTCTGCCTGCAGCTGTCTCCCCAAATACTGACTGGGAAGAGGTA-AGGAGGAGTTCATTGAAATTCATTTTCATGAATGTTTAATGGTTCAACTAATATGATTAGGTCCAGGCCTGAATGAGCAGCAGGGCGGCAGACCTGCTGAAACGACACAGGGTAATGAGATCAGCCAGGCTGT----GGGGTCTTCCCTTCTCCATCCTTGGAGGGTGTGATCTGGTTAGCAGCTCCATAAATACAGAGATCAGGTCAGAGAGCAAGAAAAGAGTGGTGGGGATGGGGCAGGAGAGTGGAAAGTTCCTTTGGAGAAT---ATGCTTGTACTTCCTGATTCTCTGATACTATCAGTTTCATCTTTCAAGTACCCACCATAGAGTCCTCCACCACTTTCTTCCCCTCAC-CATCTTAGGGGA-CCTATTGGGAGAACCTGGGCATCTACATGATGATGTGCACTC--GtctatgcacacacatacacacacacacacacacacacacacacacactcctgccgGGATGTGACTCCAGGCCACAGAAACCCAGGCTAAGAATGGCAGTTG--GGCAACAGAGAATCaagcaacagaaagaaagacGATGTCTTGCTCAGGCTTAAAAGAaactggaagaggaagaaaggccAGCCTTAGCCACTGCTCCCACTCCTG---AGTTTGCTGTGGGAGTTAAATGTGTGGACTCAGGAGCCAGCCCGCCCGCACTCCAATCTTGGCTGACTTCCTTCTAGCTTTGTGACCTTAGGCAAGTATTTATTTGCTCTGCAGCTTCTTCATCTCTATTCGGAGAGGGTAATAGAATCCACGTCACAGGGCAGTGGTGAGCGTTTAATGAGTTAGAATAAAACATTAGGAACAATGCCTGGGACACTGTAAATGCCTATTATTTCACTTTCAGAAGAGG---CCACTTGCCGTGATAGCTCAGGATTGGAGGCTCTTGGGATTCATCTGGGACACGTTTCAGTGACACCAAGAACACTGAGGAGACATCAGCCCCACCCCAGGGTGAAGAAGGGAATGACGGACAGGCAGTGTTCCACAAAGGCTGCGAGTGCTG-GTGCGTGAGCACCTGGGCAGGGCCGAGCTGCTGCAGCTGACGCGTTAGGTCCGCAGGTGCCCCCGCCATCCGCAGGTGCTCCTCCGCTCGCACGGAGCAGGGCTTGGCGCTCCTGCACGGAGGATCAAGCTCCCTCCAGATCACGGAGCTCACTGATTACGCATGAAAGTAGGA-TGTTTCGG-GAATAATGGCCCCAAAATGTGCTTCCCCGCCCATCTTTCCTGCCTCAATCAATTAGA--GCAAGTCCCACCCAAGCAACCAGACTGGAAGGAGCAGCACAGGAAGGAATAGTTGGGTTTCTCTGCCCTAAAGGAGA-CCTGACAGCTGTGTGTCTCCCCACTGGAGGCACCAGGAAAATACTCCCGGCAGAGG-TCTTTGCATGGAGTATTCATTAAGCACTGACTACACACCAGCACG-----GTGTTAGACACTGAGCAGTAAAATGCTGAATTAAACGGTGTCTTGGTCTTCAAGGAGCTTACGGTGAGAGCTCTTGCCACCA-CTGCTGCCTTCCAGCCCACGATGGTGTACACACAAACCCcccagagggaaggaagggggtgTCGGCAAATGCCAGAAACGTATAGCTTTTCTTGGTTCGTTTTCTGGAAGA-CATGTAATTCCCTTCTTGCAATTATCTCAGCCTGCTCTC-CCCTTCCCGCgtccctttccatttttt---tctccctggGATTTTCTACTCTTTTCCCTCCAGACTCTGCTATCGGCTTCCCTCCCTACATACACCTCTCTCAGT-CACCCCAACCTGTCCCAACTGTCCTATGCCATTTTCTCTTCCGTGGTTTCTTTCCTTGGCTCCCCACTC-CGGGGTCCCCAAATGCCAG-------------CAcctctctgctccccacccccagcg------CCCTGGGTC------CTCTCTTTCAGCACCGGGGACAGCTCCAGCCCCCGGAACAATGGACCCCATTTTAGGGCTCCTCTATAAATTCTCCATCTTAGTGCCTTGCCTAACTCCTGATTGG

a score=431632
s chr3            94478494 14343 + 160039680 [encoded data, 16403 characters]
s HiC_scaffold_1 139526655 15376 - 233722169 [encoded data, 16403 characters]

a score=194243
s chr3            94495774 8152 + 160039680 [encoded data, 8870 characters]
s HiC_scaffold_1 139543862 7706 - 233722169 [encoded data, 8870 characters]

a score=10402
s chr3            94510997 294 + 160039680 AGACAAAACAAGACATTTA-----AGCAGTAATGGAGACACAGACTTACCATGACCATCTTCCTTTGTTCATGGAGCTTCTGTAACTGGTAAGATTTCTCTTCTGCTTTAATGTAACCTTTCTTTACATCATCAACAGCCTATCA-CAAAGCAGAGACAGGGAAAGAAAAG---------------TTACTCACA-------------------------TGCATTTTTAGGAGGGCTTGTGTTCACCTGGACCACCATTACCATGACCACAGTGAACTGTCACCACAGGTGCCTTTACTAGAATAAC-------TAGCACTG---AAGGATGGT----GGCACATGAGAAATC
s HiC_scaffold_1 139558799 341 - 233722169 AGGtaaaaagagaattttataaaaagtattaATGGG--CATAAACTTACCATGACCATTTTCCTTTGTTCATATAGCTTCTGTAATTGGTAAGACTTTTCCTCTGCTTTGATGTAACCTTTCTTCACATCATCAACAGCCTATCACCAAAATAAACGCAGGGAAGAAGGGGATGTAAGAGGCATTATCAAACACATTcttgataaaaatagaaatgtaggTGCATTTTCAGAAAAACCTGTATCTTCCTGGATTATCAT---CATAACTG--------TATCAACATGGACATATTAATTTGAGTAACTAAAGAGTAGCATTGCTTAAGAATTGTTCTAAGCATGTGAAAAatc

a score=42169
s chr3            94518437 1581 + 160039680 TATCTcataagtatcaaatttcc-tgagctctgtgagcagtgtaagcaaattatttaaaccagctatgtgtgtgtgtgttcatagaaattcgatctgcagcaaacagcttaccagtttcagaggact-----tgaaaccaagtctaaaatgggggcagtttgaggaatttagcccttgatctgtgggatttgatatttccaggcagatagtgtcagaattgcataacacttaatgatgtgtcagagtggttccaccgaagaatcacacacttgctggtggagacaaattcctataccccttgacatcacag-gcgtctctgcattgattgtgatataagaatgaagtaaaaacCAGACATTCTGCTTTTCCCAGACTCACA-TA-GTATAGTATTGCTTTAGAAATTCTGAACATATACATAACCATAG-GCTCATTTTGTTGATT-----AAAAATGTGAACTTTTTCAAAACTCTGGCACAGCT------CTAGC--ATTTATGACTCCTGAAACAGGATGAACCATATTCTAAGTACTACTTGGAC--------------------CCAAGGATTCACACTGAACTGTCTAACTACTAAGTATATACAAG-----AAAGGAACCTAGCTTTTAGCAGGAAGACTTATTCACCCACCTGATGAAAGAAGTACGTAACAGCAAGGTCATTGTCATTTAAGAGGACTTCTTCTTCTGTTGTAAAGAGCCACTTGCGAATGGTCAGGCAAGTGCCTGGCACAGCTGATGTATAGTTCTGGACGTAGAGTTTATGAGGAAATTCATTAGGTGCCAGCTTACGTACTGAAGAAGACAAAACAAAGAATGCTGAGTGGAGTGATGTATA---GGAGTTTCCCTAATAGAAACTATACACAGCAGACCAATAATGGTAGGTTGTCATTAATTAGAGCACCAGCTCAAATTCATCAAGTAACTC-TACCTCAGGAGCAGAAAACAACCAAATGCCCAGCTAAATCCACTCTTTCTAACTATGAATCTAGCCAGTAAAA----CAAATGAGTGCAGTCTGTTGCTTAGATAACTGGTCCTTTAGATAACATGACTGCAG-AGAGAGTGCCTACTCCAAGTTCAGTTAAAATGTTTCATGTATGACCTGTTACATTAACATGCATGTTTGGTCCACCAAACATCTTCAG-AGGAGCCTCTTCTCTTACCCAGCTATGGGCCATTTGGACTCTCCTATGGCCATTCTCAGTGTACTGCATTTATTCATACAGAATTAAAAGATACTTCTCAGCCAATCGCCCCCAAATCCTAAGGCAGCTGTCACACTCCAGG-TGTCTACTGAGTaacttctgagcagcctggctccactgtgagctgggattacaatgtgccaccatgcctagcttACACCTTCCAATTTCTACACTAGCTCTTCAAATCGTTCTTGAGGCTTACTTGGCTTCACAACACTGCAAAAGACAGACTCGATTTTTCTCC--TTTACAG-----------AAAGCTTGGG-------AAGGATA---------------AGGTCATTACCAATTCTTTACAACACAATTTATATCTGTGTA-TTAGGCTACTGAGAGTTGGGAAGAAAAATAATGGGAAGAAAAATAATCGGAAGATGGCTGCTTCCATGGATTCAAAGTCGCTAT
s HiC_scaffold_1 139570519 1582 - 233722169 tATATGCTAAGTAAAGTGTTTCCATAAGTTCTATGAGTTGTtctaacaaattaataaaacctgtGGTCAGTTGGTCta-------aaattttaaaggcaaaaaaaaaaaaaaaaattatagaggcCTGGTATTGTAACCGGATCTAAAATGGGGGTAGTCTTGGAGACTGAGCA-TTGA-CTGTGGGATCCGATATTGCCA--CTGATAGTATCAGAGCTGAATTAAATCTGATGATG-GTCAGATGGTATCTACTGCAGAATTGTTTGTGTGCCGACTGGGAGAAATCCTCACATCTTTTGAGGTCACATTAAGTCTTCTGGTTGATTATGG-ATCAGAGCAGAGGAAAA--TAGATGATTTGTTTTCCCCAGACacacaatatatataatattgatGAAAAATTTTTGAACAGGTATACACTCACAATGCTCATttttcttgtcttaaaaaaatcaCTAACTGTTT--AAATTCCAGAATATCTTCACTTCTAACTTATTTATCTTTTGCAAAATAGGAtagaatattttacaaatttaactCAGACACAGAAGTACAGTGGCTTATCCAAGGATTCACGATAAATTGGGAAATTACCAACTACACAcgaacagaaaaagaaacctgTCTCCTAG---GAAGATCAGTTCACCCACCTGATGAAAGAAGTAGGTAACGGCAAGGTCATTGTCATTTAAGAGGATTTCTTCTTCTGTTGTAAAAAGCCACTTTCGAATGGTCAGGCAGGTGCCTGGCACAGCTGATGTGTAATTCTGGACATAGAGTTTATGAGGAAATTCATTAGGTGCCAGCTTACGTActaaaaaaaagaccaaaaaaaaagttgtagtgaaaaaaatatacacagaattTCCCTAATATAAACTATTGAAGGCAGACCAAATATGGTAGGTTTTCATTAAACAGAGCA-CAGCTCAAATTCATCAAGAAGCTCTTGTCCttggaacacaaaatactcag--GTTTAGCTAAGTTTATCCCTTCTAACTATGACTACGGCCAGTTCAACCTCCAACTGTCTGAAATC----ATTTGAAAGGCAAGACCTTCAGTTACCATGATGACTGCAGATAGCACCAACTCCAAATTCAGTTTGAAATTATCAACCATTATCTGATAAGTTACAGCTGATATCTA-----------CTCTTCAGCAAAAGTCTCCGCTTTTACCTGGCTATGGG---------------------CATTAACAG---ACTGCTTTTATT----AAGAACTGAAAGGCTCTTCCTACTCTAT---CCCTAAAGCCTCAGGCattcatcaaaatgaaaactgTCTTCAGCATAA-----GGATACCTCTTCCTAACCATATAC----AACAGGATAAAtcaccatttct--tttattttctcttatctttCCA--AGTATGTGTATTTTCTCTTAACACATACTTGGCTTTATAACACTGAGAAAGACATATTTAATAattctccattttatagaaagTGAAGCTAAAGCTTAGAAAAATGTAAGCATAGAACTCAAGTATCTTAGTACCCTAGCAATCCtttctaatataatttatatCTGACTAGTTAGGCTTTTAAGAGTTGGgaagaaaaat-atgataaaa-----------gagATGGCTGTTTCAGGGGAATCAAAGTTTCTGT

a score=15590
s chr3            94520009 386 + 160039680 AGTCGCTATATACTGACAAAAGAAGAAATGGATGAAT---ATTGATCAGAAATCCTT--TATAAGATCTGCCAAG-TCTGCTTGCTGAAGGCAGTATTAGT----AAGTTGGCTCTCCTTTCAGCAGTTTTTGTTCAAGAATACTAGACTAAAACAA--ACAAAATATAGTAACAGCTATTGGCACTTACCAAAGGAATGATTGATCACTTCAAATAAGGCAAAGTAATTCACTGTTGTACTGTCCATGCCAACCTTTGCTGCAATAGCCTGAAGTTTAAACAGGACACAATTATTTCAGGAAAAGTAAGATCAGACAATGCTAT--GGAGGCAGGTACATGCAGGA--GAAGGGGAAAAGGAGACA---CTACATCCTAGCTTCATAAAAACTACCATGGCCCA
s HiC_scaffold_1 139572596 399 - 233722169 AATCTATAGGTgctaacaaaagaagaaa--aacaaaccacagtGATCAGGAATCCTTATGATCAGGCTTAGCAGGATTTGCTTAGTGGGATCTTCCTCTGTCTTCAAATT--CTTATCTGGGAAAAGTTTTTGTCTAATGGTATTAGAATAAAATACTCCCCAAACTCAATATTAGCCATTAGCACTTACCAAAAGAATGATTGATCACTTCAAATAAGGCAAAGTAATTCACTGTTGTACTGTCCATGCCAACCTTTGCTGCAATAGCCTAAAGTTCAAACAGGATTGAATGATTT-AGGAAAACTAAG-TCAGACAATGCTGTCGGGAAACGGGTATATGCATGAGGGAGAGGGCAAAGGGGAAAGGTCTGCCACCTCAGTTCATAAAAACTATTATGGGTCA

a score=8757
s chr3            94520963 429 + 160039680 gtTGATAAGCAGCATATTAAACAAGAACCAATTATTACTCTCTGGAAACTAAGG-ACT--------TCATGTGCAAATAAATCAAAATTGAAATTTCATACACTTAACAAAAAGAAAAGAAGCACAAAGCAGATTTTCGTAACAAAATCAATTTTTTAAAAGCACTACTAATAT-AAGCAAGGCATT--CACTAGATAGGAAAAATCATTGGAAGACTGAACCAAATATGACTGTATCACTTCTTCCTGTGTCTGTTCCCATATCCAGCCTCAATTCAT--CTGATATACAATATCAGATGAATATAGGAACCGGAAATTATAAGTATTTTAAATCACTATTCTATACTGCACTGGATGAAAACTGGAATACTCTCAGGA----------------------------CTTACAAAATGGTTTCTAGCCACAAGACACAAGAATGAGATGAGAGAAGGGGAAGTATTAAAG
s HiC_scaffold_1 139574013 391 - 233722169 gtTGACAAGAGACATATTAAACAAGGATCAGTTCTTG-TCTGTAGGAACTAAAGTACTATGTTTTGTTATGTGCaa--------------------------cataacataaacaa--------------------tagtAACAAAATCC-CTTTTCAAGATCAATCCTAATATTAAACAAGATAATACTTCTGCACAGTAGTACTTC--------ATGAACTAAATATGACTATATC----CTTCCCACATCT---CACTTATCAAGCCTAGGTTCATTGCTGGTATG-------------ATGTAGGAGCTGGAAATTTTAAGTGTTCTAAATTACCATTCTACATTGTACTGGATAGGAAGTGAAATGttctcaagatttaaaaaatggaaccgaataaaaaaggtttaaaaaatggTTTCTAGCTAGAAGTCTCAGTAACAGGA----GCGAGGCAAAGTATGAAAG

a score=21503
s chr3            94524014 798 + 160039680 attacaagcacatgccatatactcag----ttctcatacACCTTTCTTTTAAGAAGGACAAAGTTAACTTCATAGTAGTAACATGAATTAATAAGTGTACTCTGCAC--------------ATTTTGTATGTACTAACTCATTTAATTTGTTTCTTAGTTTCGCATCATCCAA---------------TGTAAGTTGGCTTTACCTGGTACACTTGGTCTGTAGTACTGTTCTTCTTAACTCTGACAGTAACCGTTGTTCCATCCGGTAGTGCTACTCTCAGTTCTACATCAGACACACCATTGTAATTCTAAAGGA-------AGAGAAAGAATTTGT-----ATTAAATCTTCATTCTCCTTGCTACATGCTAGCTAAATAATATTT--AACATG----AGACAGAAAGTAAATTCTATTAAATTGAGAAAAAATTAAGTCTTAAAAGTTTATATATTTACAACTCATAAAGCTGGCTTTAGGTTG---TAGAAGTTATCCTCTAAGATGAACAG-------------------------ATACGTTGCCACTTCAAAATAGAATCCTGCCTAGGTGAAACAGTCTAGGTGAAGCCCAGATGAGAT-TTCAGTTCACTCTTGTCACTCCATTTAGAACTTACAAAGGAGTAAGAAACAGGAGACAGGAGATGTCTCAACA--------CTGGTTGAATAAGTCGGCAGCTTACATGGGCTAAAGGCACATGCTGATGTCCTTTCTGAACCTTGATATAATCAGACCATCTTCAAAATG----TGCAATAGACTTTGAGATGTAAATT-GTGTCATTACCAATATTCTAGCTAAGACTATACAATTCTTACTCTATTTAATTAAAAATAAACACTTAagcc---aggtgtggt
s HiC_scaffold_1 139577052 833 - 233722169 ATTACAACCAC------TCTACTCAAGTACTTATTATAC------CTTTTAAGGAGGACAGAGT--ACTT--TGACAAtaaca--atttaataaatatattaggTGCTAGATACAGTAAGCACTTTTTATGTATTAGCTCATTTCATCT--TTCTTAGCTTCATACCATCCAAGTTGAAATTAACTTGTTCAAGTTTAATTTACCTGATATACTTGATCTGTAGTACTGTTCTTTTTCACTCTGACCGTAACTGTTGTTCCATCTGGTGATGCTACTCTCAGCTCTACATCAGATACGCCATTGTAGTTCTGgaaaaaagatacagagaaa-aatttatgACCCAGTACTTCCTCACTCTACTTCACAAACGCTA-CTAAACAGTAATCCAAACACATTATGGAGAGGAAGGTAGTTccaacaaaaaggaaggaaatgacacattaaaagttaatatatttaCAAGTCATAAAGCTAACTATAGGCTGCATTAGAAGTTAACTATTAAGATGCACAGGGCAAAAAGGAAACATTGAAAGCCAATGTGTTCACATTTCAACACAGAAAACTGT----GTGACGCAGTCTAGGTCAAACACAGATGAAATCTTGGGTTTACTTCCATCACCCGATTCAGAACTTACAAGTGAG---GAAACAAGTGAAAACAGTAACTCCAACAAATATTCTTTGGTT-------TCAGCTGTTAAGATGTG-----------------TATCCTGGCTCAAGGGT-ATCTAATCAGGACATTACTGAAGGGAAACTGAGTAAGGCTCAGGGACATGAATTAGTACGACAGCCAATTTTCTACCAAAGAGTAAACAACTC-------ATtcagttttaaagaaatactgaGGGCTAGAGGTGTGGT

a score=20352
s chr3            94525480 1132 + 160039680 ctTCTAATAGATTTT-GATCTTCTAATTTTTATTACTGAAAAATAATCACCTAGGAATAAATTCATTCTCATTGACCATTA-----AAAACATTCTACTCTTTGCTTAAAAGCACACTAAGCATTATGATAGCttcctccttactcacaggggttaagttctaagatccacaggagatgccaggaaaca----tggttagtattgaaACACTTAATGCa-tgctgtccccacctgcactaagcagtt-gtcatgtactgtggctgtaacttttacagtttaaggtgcttcagcaaaaccagcataaatttattttttcttgcccataatttcattgacagaagagacatcct---ctcagaccttagcaatcttatcag-----------aattcttttt-------------------------------------------------------------------------------------------cttattgttg---------------------caaggcaagtactctatggct-----------ctcttggatctatgtgt--tgctaagaaaaccactcttg-ctttgaagg-------------gttgagagttatttgaatacagccaggaagcgatgccagtgcaggcaatctgaagactggccaaactcctaggtgactaccagataggtagcagatacagaggagacatattggacagaccattcaggtcccaaatgggacagcatggaatagacataaagctttattgtggttctcagaataccatacaatttgaagtttacataatatttacttctaaaatattgtattttatatgttgagaccatggctgacaacaggtaac-------aaactgtagaaa----------------gtaaaaccat---------ggataaagagagggtactactATACTTTATAC-----CCTTATCTACAA-GAAACCTATAATCTAGTCTGGG--------------------------------AAAGCAAGATATATACATAAAGAATAATTGCTGGAT---AACAGTATTACATACTCATCCT----TCTAGCC-----------------------------------------AGTTaatacttattaagcacctccaccatgcgtgatgctgtggtaagtaaggcactgggaatataaagataatcaatatttagctcttacctactggtagctcacaCACTCTTGTAAGCTAAAAATATAAAGTGACAAACTGATT-----ATATGAATAAAAATTAAAAATGAGATGGCAATAAAATGATGACTGAGTTATACTAACTGTAGAAGTTCTTTCTAG-ACGAAAAGTTGATAACTTGAGTCATCAGGAAAGACTTCAAAGA
s HiC_scaffold_1 139577982 1345 - 233722169 CTCTTAACAGATTTTTGGCCTTGTaactttttttagagaaaaataactacTTAGGAATAagtccatttatataaaataatacttgGAAAATGTATTACTCATTGCCTAAAACCACCCTGAGTATCACAGTAGT---CTCTTTATCCACTGGGAATATTGTCAAAGG--CTGAGTGGGTGCCAGAAACCAGGGATGGATAGTCCTGAATCCTTTCACTTACTGCTCTTTCCATCCTCACTGAACACTTCATCACCCACTGTGGCTATAACTTTTGTAGTCTGGAGTATGACAG-AAAACTAGCaagaacttatttttcttt----------tcatggagaGGTGACACATTCTTAACACAAATCTTACCAATCTCAGCAGCCtcagtatataatttttttttttttaattttgagagagggtctcactaagttgcctaggctgggctcaaactcatgctgggattagagatgttTGCCACCATGCCCGTAATCTTATTACTGACAACTTTTACCTTTTGAACCTAAAGGACACACCCTCCTACTAAAAGAGCCTCCTCTTGGGTATATATGTACTGCTAGCATCACTACTCTTGTCCTTGAAaacatttctaagtaaaataaaggttacttgAGTATAAGCACTGAGCAAT-----------CAATCTGATAACTGACCTGGCTATTAAGTGACTAACAAGTAGGTGACA--TATGGAATAAGTATACTGGA-------TTTGGATTATTAATGTAACTGTGAAGGATTG-TATGATACTTTATTACACTACACAGAGTGGCATACAATTTAAAActcatgaattatttatttctggaattttaaatttaatattttcaggccATGGTAGACCACAGGTAATTGAAACTAAACTgccgggcctggtggctcacgcctgtaatcccagcactcaggaggctgaggcaggaggatcattgcgagttctagaccagcctgggctacaaagtgagctcaaagccagcctgaactgcatagtgagaccctgtctcaaaaagacaaaaaaaaaaaaaaagaaagaaaaagaaactagagaAACTAAagaatactatatttttattataagccCTAGTCTGAAAACTTATAATATAAAgttgagaaaacaagacatatttAGTTAACACTTTTTAGGCACCTACAACATATTTAATATTGTTGTAGG----GCACTAGAAATATAAAGATGATCAAGACTTAGCT-----------------------------------AAAAATACAAAGTAACAAACATACTGCAGCATATGTATAAGATAAGAGAATGAGACAGCAATAAGGTGATAATAGAGTGGTACTGACTGTGGAAGTTCTTAGTGGAATGAAAAATTGATGACTTGAATCATCATGGAAAGCTGCACAGA

a score=11927
s chr3            94528738 357 + 160039680 ACAGAGAAGGTGAACCTGGTTCTAGGTATTAAAGGGTAG--------ATACGCACGGAAAGGAAACGGGAGAAATCCACTCATTCACAGAGTTGATTGTAATTCATCTCACAAACATTATCTATA-----TTTTTTCCCAAAATGAGCTCAGCAAGAAATGATCAGGGAAGGGAGTGATCACCTACCTCATCAGACTCAGACAGGAATTCCTGCATGATGTCACTCTCACCAATGACTCGGATTGAACACACTGTAGAAAACAAAGATAGTATCAGGC-------CCTA-------AACCAGGAATATAA-----AGAATATATCAAAAAGCTTccatttaaatcatcagggcaaagcaa-gttcatacctatc---tgcaattttagtactt
s HiC_scaffold_1 139579322 370 - 233722169 ACAGAGAAGGTGGTTCTGGTGCTC----TTAAAGGATAGTAAGCAGGATACATACAAAAACAAAGTAGAAGAAAT--------------AGTTTATTGCAACCCA-CACATAATCAGTATCTTTAATTTATTCTCCCCCACAAGGACTGAAGAGGAAAATAGTTACTAAAGGGAGTATTCACCTACCTCATCTGATTCTGACAGGAATTCCTGCATGATGTCACTCTCACCAATGACTCGTATTGAACAAActg--gaaaacaaagacagaatCTGGCATAGAGTCCTATGTTTGTAATCAAGAATACAAAGTCGAGAACACATC--ACAGCCTAAATTTAAATCACCAGTAGCAGGCAACATCCACTCCTGCCAGAtgaagtttttaaactt

a score=11761
s chr3            94530200 656 + 160039680 agcatttaaaataatataacttggttatagtgtctcttcaaagcaatagaaatgtaattaagacaCACCGTTAGCAAGCTATATAGCT--ATAATACAGCCAGGCAAG-TGTCTTTTCACAACCACAAGATTA-----CATGTTTTCAGATCTG-TGTCATTTCTATACCTTTCTAGAGAAACAAATATCACAGTA-CTACATCCATACAACCCTAAATTATCATTTGGAAGCTTTAT---------TAATTCTCC--------------------------CTATTGAGAATAAGGAGACTTTAGATTGTCAACAGATAAACCTATACAG---------------------GAACAGCTGTAGAAGGAATAAAGAATTTCTATACAGGACACCCCAATGAACCAAGAATCATC------AATGCACC----ATAGTAATGTATT----------------------TATAGGTAAATACAACCCTAT-----AAATAAAAGACCATGAAGGGCCACCAACAAC-TTCATTTTTCTGTTATGAGGTTCTCTGCAAGCTAGCAAAGCAGGGTACTA-TCACCATAGAGA-ACATTTCAGCCTTGCCTTCAGGGCCCAGATCATTCAACACTTCTTATCAGGAACATGACTTCCTTGCACTACTGATGTTTAGGAAACACAGCTATGCAATTTAGGAAT-------------TAGAATCTACACCCATTCAGCATAGTAAAGTTTAATGGACTAGCTTACC---TTCTGAACtttttttt
s HiC_scaffold_1 139580797 754 - 233722169 AGCACATAAAACATTAT---TCTATTAaactaacattttaaag----aaaaacctatTC----CATACC--TAGTAAGTTATTTAACTCCGTAATACAGCAAGGCAAGATCTTTTTTCCGAACTCTAAGATGAACTGTCATATTTAGGAGACTGCTGTCATTTCTCTGCCTTTCTAGAGAAA--AATGCTGCAACATCTGTAAACATGAGTTTCTAGTGTATCACTTGGAAGTTCTGTGGTAACAGGTAACTGTTTTACCTGTGAACTGTTTTACCTAAAGTCTACTTAAAACAACAAGACATTA-CCTATAACTCAGCAAACCTAGATATCTATGAATACTTTTTTTCTATGAATACTTGCAAAAAGAATAAGGAGTTTTCCTGAAGGATATGTTGATGagtcaagaatcattttaatgaaaatatcttAAATAGTACTCAATTAGTTCCCAAATCAATTTTTGTATATAGGTACATCTGCTTGTATTTGTTAGCTGGCAGACAATGTAAAAGCATCaaaactatttatttttccattgttcaGT--------GGTCAATAAAACAAGATACTAATCACTACACTTAGACATTTCAGTCTGGTCCTCAAAGTTCAACTCATTTAATGCTTACAGTCAGAAATGCGACTTACTTTTATTACTGTGTTTTAGGAAACACAGCTATGCAGTTTAGGAGTCacactatatgtctggtatgtaTGCTTACACAGGACTGGAGAGTTTAATGGGCTGGCTTACCTCTTTCTAGATATTCTTCT

a score=21664
s chr3            94531190 547 + 160039680 GCTTACCCTTTTCTAGATATTCTTCCAACCCACGACGCCGGGCATCCAATTGTTGTTCTGATAATGAGAATGGCCACTTTCCTGGAAGTCGAGGAAATGTAAAGTTGGCAAATTCTCTCTTCAGGTTTTGGTGCAGTATGGCAAACTCCCGGTACCGCTTAGAACACAGCTGCCTCCCAGCCATGTAAACATTGTATACCTGGTGAGACAGG--AACAAAG---------------------AATTCACAG--TCATCTAAAGCCAGGTGCATAGTGGCTAGGTCTATTT--------CTATG--------CACTACACAA-AAAATGTTCACAGCCATTTTAATAAACATGGC-AAAAGTTCTATGTAC--AAGAAAACTACTCTTTTTGA---GGAGGTATGATCTCATTTTACC------AGTTTCTT-TAATA----TCTAAATACCTTCAAAGGCAATTACTAGGT----------------------TTTCCAGAAAGGCAAAAGTTTCTCAGAACCATTGCAATGAATGCAATGAGTGAACAAGCAAGCTAAGGAAGGAAAAGAAAAGTTAGGATTTACTATAG-AACAGCATGACTTGGCTGACATACGTGTAGCTCACAC
s HiC_scaffold_1 139581525 615 - 233722169 GCTTACCTCTTTCTAGATATTCTTCTAACCCCCGACGTCGAGCATCTAACTGTTGTTCTGATAATGAGAATGGCCACTTTCCTGGAAGTCGAGGAAATGTAAAGTTGGCAAACTCTCTCTTTAGGTTCTGGTGTAGGATAGCAAACTCTCGGTACCGCTTAGAACACAGCTGCCTCCCTGCCATGTAAACATTGTATACCTGATGAGAGAGAATAACAAAAAAAGTCTCCTTAATACAAATCAAATCACAGAATCACCTGAAGTCAGGCTCAGA-TGGATA--TTCATTTAACGGAGACTATGTTCAagatcactttaaaataaaacatac-------ttttaacACACATGCCAAAAAGTTGTATGTACAAAAGAGGACCACTCCTTTCAAAAGGATGGCATAATCTTATTTCTCCTAATAAAATTACTTCCAACACACTTTCATATATCTTTGAAGATAATTACAGTGTCAGTTTTTAAGGgtggattttattttcagaaagctACAAGTTTTTCAAAGTTAATGTGAT-AATATGGTGAGCGAATGAGCAACCAAATATGGACGATGAAAACCTACAACTGATTATAACAGTAGTGTGACACGTATG---TATGCGTGATTCAAAC

a score=71171
s chr3            94560371 3298 + 160039680 agtaCACATTGT-----TTGTTTGGCATTCCAAGAGAGAGAGAGAGagagagagaaatatagagacagaaagcagatcagtggttag---------ttaacaaaggaaaataactataaaacata-acaggggaacttggggctgctgaaag--tattctgtccttatgtggtagt-------------acataaa--------agactataaacatCAT-------------------AAAACTGGACATCTAGGCAGATGAAAGTTAACATACAAAAACTTTGCT-AATAAAACTGACCCTTTACAAAAGAATAATTAGTAGTTTCATTCCTTGTCTCAAGGCTTACAGAAGTTTCCAAAGTCCTAGGTTAATTCTCAAAAAGTTCCAT----------------------------------AACTAATCAGCT---CTCATT---------------------------TCTAAAGTTTGTGTACAGCTCTAAGAACACAGAGACCATGCTGCCACAAAACCTATGTGCAATTATCCCCAGCTAACTT----------------GTTTTGTTCAGC-------ATCCCCCTGC-------------CCCTAGGAAGAATTCCACAAGCACTTAGCAGCACATTCCTATACATGGGACAAATTCTACTTTTAGAGGCAGTAACTTTAATCAGCATATCAGttttttat--------------------------tttatagagtgttaaacgtagaaccttatgta---tgttagttaaacactacc-----cactgag---------------------------------------------ctagatc------------------------cccagcccTACAG--GCCAGCTCTAGACACC----TGTAGTCTATTTGCCAATATCTAACAGAACCCACTACATTT-CTAAAAAGAATTAAATAATTTA----TGCTTTTTATGTCAATGTTTCTGAAACAATTAAAGGTAAATAAGTACACAGTGCAACCAAGAGAACAAATAAACAG-------------CAGCAGCTAAGGTTTGAAGACAAGCACCATGGGAAACAGGCTGTCACATATCACCTAAAATTCAAGATGAGTTCTACT------------TATCCACAAAATAGAAATGTGCAAAACAGCTCAGGGAATTGCAGTCAAAGTATACTAGGGCCTCGAGGGGAAAACTCAGGAGTTAATCATGCACACAGACATCACCAA-GAACTGAAA--GAACAAGGTGTGGAGAGGAATGAGTACAGGAATGCACAAGCTTCAAAATG-ACAAACCTCTGTATTACCCAAATATTTTGGAAGGTA---TCTTTTAAAATTA-TCTCGCTCTATAGCTCCA--GAGCCAACAGTAAATCAGACTACAGCTAGCAGAGACATATGGTTA-------------------------AAAATAATATTCACAAATACAAACTTGAAACTGTCAGAAAATTAAACAAAATTGTTCTTATGCAGAAACTTATT---------ACTGTAGGCCACCCCCTGCAATAAATCAATTAGTGTCAAGATCTTCTCTGAGTGAGCCTAA-----CTTCCTG---ACAAACTGGCCAAGGCTGCAGTCTTATTTGATCTCCTGAAATATACTCACAA---TGAGACTGAGGGAAATACAAGCTAACTACATGTTTGAGGATCAAGTTGGGCTGACACTCACCACAAACTTCTCACCATTCTGCTCCACATGTTTGTATGTGGGGACCGATATGGGCACTGCTTGCTTTTCTGTGTAATCATAAAATGATTGTCCCAAGGAGTCGTCACTGGGATCTAGGTTATCAGCCTCATGAGGAGGTACAGACAACACTGTCAAGATCAATTCCTTCTCGCCTGCTCGGATCAGGTCCACCACCTGCTTGTGTGTCGCCCCCTCAACATTCACGCCGTTCCTAAGGGGAAAAAGGGAAAAAAACAGTCCCATAAACCAGACGGGTTCAAACACTTTGTAACTCCACCCTCCTGTCCCCACTCCAGTGT--CATAGTATGAGCCATAGAATCAAAAGATTCATCTGGTTCCAGAAAAGCTGTTTATCTTT---CAGAGTCTAAAGTGAAAAGGCTGTTTGTGAACTTATGGCA---GGGAGAGGAAATGCAAACAGGAGA-------GACCTACCCTTCCTCTAGTCCAGAATGCTACACACTGCTCGATTCAGGAAAGCATGTGGGAAAGATGGGGATGCTGGGGAGAAATAAAGCTCATTTTAGCCATCCCAACAGTCTGCTTCCCTTGTTTTAACCAGCCATATGTACAATACTATCAAAGT-GCCTTGAATACTTCTCCCACTTTTACTACAGTCTGTTCACC-----TACACTTCAAGGGGATTTCCTTCCTAAGACTTATTTCTACtatttttaattatgtgtatatatgggtatgtgcacataaacacag-----aggccggaggcctggagctagagttacaggccactgtgagccatccaagatgggtactggaaaaccaaacttgggtcc----tctgcaacagcattatacattctcaaccactgagtcatatctccaacccc---------AGAGATTTTCTTTTAAAAAAC---TCCCCTTTGTAGAGATTGTAGGTGTGCCCCCAAGATAGTTACTTAAATTA---TATATACATTTT--------------CCCCA-TATCT---------TCAAATTAACCTTCCTTTATACGAA--TTTATTATCTTGATAGTTAAAAAGTATTAACCTGCATATAGACCAGTTTCCTCTATCTCTTGGCTTCTAAATGGACAAGATTACCTCTCTAAACTGCATTATTTTCAggggctagagagattgctcagcaattaggagcactggctgctcttccaaaggacctggagtcagttcctagcacccacatggcagctcacaattgtctgtgactccagttccaggggctctgacaccctcatacagacacacatgcagtcagaacaccaatgtacataaaataaacattttaaaattattttttaaattctattatttGACCTAACTTCTTTTGTTCTCCCAATCAGCCTGGATAATCTCATAGGATGATTTGGATATATGAATAAGCTAAACATTTTCTCCTCCATACATTTCACTTTAAACTCTGTATAATCTGTCCAAACCAAGAAATACGCACCTACAGTTATACACAAGTCAACCTATTCA------------CTTCACT-TGTACAGACC---CTGAAACAAGGAGAAGTGTAAGATACAGAAGAACAATAACTTTGTTAAGAAAGGTGCCTAGTCCCACAAA---TACTCAACAAACTG-ACAGCCTTCCCAGAACGCTGACCTAGTGAGCTGCCTCAGT-AAAACCACTGAGCAGCTGGCCTCAAGGTTCCCTGGCA----CTCACCAGAGACACAGTTAAA-ATACACCTGGCCTCTACTCACTTTACTATTTAAAGTTTATCCTCCTGTTAGAGTTAGACTATTTTTTCAGTTCTGTTCCAAACCTTTAGGGTCTTCCCTTCCTGAAGAGAATGCTG------------------------AGTTTTCAGCC-GTGGACT------------AGCCTTGTATCTAAAACACCCATCTGTATAAACAGAGCAGAAAGGAGAGACCTCAGCCAGCCTCCCCTCACCCCCCCATTTCTCCTTTAGCAATGTAGGCAGTAAACCCGGC
s HiC_scaffold_1 139602757 3334 - 233722169 AGTACATATTGTGTAATTTATTTGACATCccccaaaa-------------agcaaaatatagtGACAGAAACTAGATGAGTGGATTGACCCAGACAGTAGAAGAGAAGACTAACTGAAAAGGAAGTGTGAGGGAATTTGGGGGGgatgaaaaaatgttctataCTAAGATAGTAGTGGTAGTAGTTATAACATAAAtagtatatatattatacatactaTGTATAATTTCGAAAACTCTAAAACTGAATACTTAACTGGAAGAGTGTTAACAAAGGTAAGTTACATTCAGtaagattgttttttta--aaaaaagcactgaTAGTTTCATTCCTTTTCTCAGGTCT---ACAAGTTCTCATGGTCTTAGGT-AATTCCCAGATA--TCCATGTCTGCTCTGTGTTTAGGAACTGACCCTAATTTGAACTTACCGGCTTTACTCATCAAAGTTAACCCTTTTGATTCATAAAACCTTAAACTTTATGTCTCGTTCTAAGAACACACA--CTACACTAACATAAAGCCTACGTGTTATCATTTCCAGCTAAACTTAGACAAACTATAACTGATCTCTGCAACTCTTCTAGCTTCACTGCTGTTATCactccactttaaaaaaaatgccaTAAATGTTTAGAAGCTCATTCCTGTACAGGAGACAAATCCAAGTTTTACAGACCGCAACTTTAAT----AGATCAACTTCTTCTATCTACCCCCCAACAAAGCCTTTGCATTGATTGAGCTGTAtccctcattctttttaaaattttttactgaGATAGGatctaagtcactgagttgctcaggctgggctctaacttgggATTTTCCTGCCTTAACTTCCTAGAGTACGGGGGctcataggcatgcaccaccttgcctTGTAGTAGTTAGCTTTAAACACACACATGaggtctgtttgccagtatctaaTGGAACCTTctaaattttctacaaaatataGTAGACTATAACATTTCTCATTATATTAACACTTCCAAAA----TACAGGCAAATAAA-GCAAACTGCAAGTACCAGAA-AAGTAGACTGGTGTATGTATCACTGACAATTAGGTTCTGAACAACAACATT--------CAGG------------------AATTTAAGACGGATTTTCCTACACATGTACAATAGCAACAAATTGGTAATGTGTAAAAACCTTATGGAAATTGCATTGAAAGTACACTTGGG---------GAAAAC-CAAGAGTTAATCATACACAAAGACATGgccaaaggaatgaaaaagaacaaaatggggAGAAG---------------GCATCAATTCTAAAATGGACAACTCTCTGTATTACCCAAATATTTTGGAAGGTAGcaccttttaaaattaatcttgtCTTACAGCTCCAAAGAGTCAA-AATAAATGAGGCTACTATGAGCAAAGAGATATGATAACCAATAAAAGAACAAGCAAGCAGGCAAAATAA-ACTCTTATGTATGAACTTGAAACTGTCAGGAAGTAAAACAGAACTGTACCCAAGCAAAAACAGATTCATCATCATACTATAGTTCACCCTCTG--ACAAATCAAG----gtcaatgttttttatttctgtgtaccATCACCCTTCCTGTAGATAAACTGACCTACATAGCAGCCTTTT---------------ATATTCATAACCATGAGACTGGGGAAAATGAAAGCTAAATAC----CTGATGATCGAGTTGGGCTGACACTCACCACAAATTTTTCACCATTCTGCTCCACATGTTTGTATGTGGGGACCGATATGGGCACTGCTTGCTTTTCTGTGTAATCATAAAAAGACTGTCCCAACGAGTCGTCACTGGGATCTAGGTTATCTGCCTCATGAGGAGGTACAGATAACACTGTCAAGATCAACTCCTTCTCGCCTGCTCGGATCAGGTCCACCACCTGCTTGTGTGTCGCCCCCTCAACATTCACGCCGTTCCtaaggggaaaaagggaaaaagacaatcCCATAAACCATAAGGGTCTAGACAC--TGTATCTCCACCCTCCTGCCCCCAA-CCAGCGTCACACAATACGAACCATAAAATCAAAAGACTCATTTGGgtccatgaaatttatttatatctttatagATTCTAAAATG-AAAGACTATTTGTGAACTT-TaacacagggggaaaaaaatggaaacaggtGAAAGAAAGGACCTGCCCTTCCTCTTTATTAGAATCCAACACACAGT----TTCAGGAAAGCACATGGGAAAGA--GAGAAGCTGAGAAGGCACAAAGCTT-TTTAAGCTA----AATAGTCCAACTTCTTCACCCTAACTTAGCACGTATATAATGCAATCAAAGTGGCTTTTGACAATCTTGTCA--TCTGAAATGGACTCTTCATCCTTTTTAAACCTCCTGGgaattttgttaaaaagaaac-ttCACACTGGGTTCAGT--------------GGttcaagcctgtaatctcagtcaGCATTCTAGAAAGCtgagaggaggatcacaagttagtcTGACCAACTTAATGAGactataaaaaaactaaaaaaagggtcaagatgtagctcagcatga---------aggccctgggtttaatccctagcactacaaaacaaaaaaacaatacttcacaaaaTGCATCCCCTT-----AACttgtaaatagagacaaaaaaagatgacttgaaatacttcctttacattttaaaacctaATTTCACCCCATTATCTTCCAGCTGGTCAACTAAATTTTCCTTTATACCAAGTTTTATTATCTTGGGagttaaa---taataattttcatacATACAAGGTTTCTTT-------------------------ATTACCTCTAAAAA----ATTAT-------------------------------------------------------------------AGTACCTA------------------------------------------------------------------------------------------------------------------------------------------AACCCAACTTCCTTTGTCCTCTCAATCA-CCAAATTAATTTC---------TCTGG-------------------ATTTTCTCTGC----TATCTTATTTAAAGTCCAATGTAATCTATTCAAACTTAAAAATACACACTTAAGGTGGT--GTAAATCAACATACTCATTCTCCTCCCTGTTTCACTGCGTACAAAAAAGGCTGGAATAAGGACACGTACAAGGTTTGAAAGAACAGCAATTCTGTCAAGA----TGCTGAGGCTCACAAAATCCACCCAGCAAACTGAACCACCTTCTGAGAATGCTTTTTCCCCCTGCTGTCTCAGCAAAAATCACTGGGCAGCAGGCCTGAAGGTTCCCTATCATGGCCACCCCAAGAGCGAAGAGAAATACACACCTGACCCTTAATCCATTTACTATTTAAAGCTTATCTACCCTTTaaagttaaatt-ctttttcagttCTATTCCAAACCATTAGGGTTTTTTCATCCTGAAAATGATCCTAACTTTAGTAACAAGCTCTCTACATACTTTTCAGTCAGCAGAATTGTCTCTGTCAGAGTCTGGTATCTGAAACTTCCATTTACATCAAT-GGGCA-----GAGATTTCTCAGCCAGCCTCCTCG---------ATTTTGTGTTTAACAATCTAGCCAGTAAATTCAGC

a score=19582
s chr3            94565490 2007 + 160039680 tcaaccccaa---gcattacaaaaagaGACACACACACAGaaa---aaaaaaaaaaaaaaaaaaaaaCAGGAAAGAACTTCTAGTGTTCTGTGCCATATCCTAAACACATTTGCTA-------ATGTTCATCTGGAT-AACTGCAGAAGGAATGCTCTATGTGCCTTCACTTAATACAAAGAAAGAAATTCTTTCATTCTCTAAAGAATGAA-----GTCACTAAAAAACTCCAGGCCATCTAATTTGAAACAGGGCCCTCCCTCCTCAGGAATTTCCAGGGCTTCT--------CAGTCATAAAAGTGTTAGTCATAggatagagagacagctcagtatgtgtatactccttttggagaagactcaagttcaattcccaacacctactctatgtggctcacaactgtaacaagctacgacacacctcaggcctccaagagcactggtaatcacatgcatatacCCGAATTCATTcacacacacacacacacacacacacacacacacacacacacacacacacatacacGCTCTCTCTCACTCATAAATAACTACTTTTAATGTACTAGTCATTAAAATGTTGG-TATAA-----------TACAC-TGTTTTACACAAGAACACTATTAAACCA---GGTTCAAGTATGGT-CCCAAACTTATACAAACCTGAA-ATATAAATAAATACAAAATGTAACTTCCATCAAAAAGGGAAG--TTTCAGCAGTGCAGACATTTGTCTCaaag--catgg------gctctagggagtcagactgcatggggtctgaataccaatgatgccgtcttagataagaccttatttagtattaggtaactcattcagtcttgctagacctcaattccccaatctgtatgaaaagc------caccacatacagctaatgaaggctatgagaactaaag-acagagccactgataaagctattaggacagtgatatccacacagtaagtgA--GCTGGTTCAA---CTTGT-TCTCCATGACAATAAAACCTCTTCCAACAATTTTGTTT-------------TCCTTCCGTCTTCATAACATAATCTAT-CAGAAATTCATCTGAAAATAAATGATCACAAAATAAGCAAGCATCAGAGAACCCACACAAGTCCAACCAACAACACAAAAGATGTGCAGTGAAC-TAAGAAATACCAACCTATCCTTTTCCACAAAGAAGTCAGTATCTTCAAGGAACTATCAAAAAGAATTCAACAAATATGTGACCAAAGAAATAAAACTGAATGTTAATGACAGAATCAGGAGGGTAAGTCCCgaggctggagagaagtaacagctctgcaggtaagagtattcactgctctttcaagaggacctgagttcagtcgccagcacccacacccatcagctcacaactgcctataaccctagctccttcaacacctgcgtgcatgggtgtacct-atacataaacatcatctacatgcacaactgcattcatacacataCTTTAATATAATTGTGAATAAATAAGTACATTTTTTAAagatgctaagcctacaggtactcattttacaatcctttcaacttctctgtgtttgaaattttccataagaaaatgttTTATAATAAAACCCATAAATAAGACCTGAGTTTTATTTGGGAATCTAAGTGATATTCAAATTACCTGGATGTTTTCAGCATTGTAAAGATGCACTTGATAATTTTAAAGAAAGCCTCATTTTTACTTTGAAATCAATGTTTAGCTCCAATGGAGACATTTTTAGCTAGCTAATGGAAGTGGCTTCAAATAGTACAACTAAAGTTAGCCAGCTGAGGAAATTACGAAGCTAATATAAACACTTCCAGAAGCA-GAAGAGAAGCTCTGGTC-------AGGATTTATACTCTGCTTCTGAAGGAAGCTAGACATAATGGAACAAGGTTTGGACAAAAACATAACAAAGCAAACTTCTGTATAAACCAGGGAAAGGAGCCATTTCTACCCCACAAGCACAATACTATG-TGACCCCTGGTGACATACACG--AGTGACT-----AAATGGCAATTAAT-CCTCAGAAGCAGTCC-TTTAAACACAGCCAATAGAC
s HiC_scaffold_1 139606774 1664 - 233722169 tcaacgccagcctgaactacacagcgagaccctgtctcaaaaagacaaagaaagaaagaaaaaaaaaaaggaaagaacttc-------CTACGTCATATTTTAAACATACTTGCTACTTGCTAGTATTTACCAGTTTCAGCTACAGAAGGAATACTATATAT-CCCACAACTAATGTAAAGAGGGAAACGCCTTCATTCTTCAGAGAATGAAATGAGGTCAGTAAAAATC-CCAGGATGTCTGATTTGAAA-AGGGCCTTCCCTTCTCAAGAAgt---aatgcctataatcccagcagtctagaaAGT--------TAAAATAGGGGGATCCCAAATTAAA---------------GAGACCAGTCTAGGCAAGTTAgttagagagactctgt----ctcaaaattagaa--------aacaaaggaTAGGGATGTA-GACCAATgctaa----------agccctgggttcaatccccagcac-----------------------taca-ataGATAAGATTAGGCAGG--------------TAGATAATCAACTTCA------TAGTCATAAAAATGTTAGCTATCAActgtattttttacatatttttttcacaCAAATGCTACTAAACTACTCAAATTAGGTGTGGTATCCAAACCTGTACAATTATAAAGatgtaagtaaatgcaaaatataaattctg-CAATAAGGGAAAATTTTCAGTGGTACAGAATTCTAGCTCAAAGTACATAGTCAGACACACTTGGGAGCCAGACACATTGGAGTTTGAATACCAATTGTGCCAT-TTAACAAATAACTTACGTG--------------AATCAATCTCACTAAACCTCATTTGCCTAATTCACATAAAATGTGGCTAATAATACCAATAGCTAAT--AGGCTGTGAGAACTAAAATGCA---------ATTAAGCT-TGAAAATAG-GGTAACTACTCAATAAATGATAGCTATTTATAGTACTTGTATCCACTGGACAA--AAAGCTATTGTA----TTTGGTCTCCCTAATCACCAATCCTTTTGCCTTTGTAACATCTTCAATGCAGAATTTGA----AAAGTAAATGAT-------TAAGCTTGCAAC------------------------------CAAATAAT----AGGGATCACAATAATCACCAACTT-TCCT----------AAAACCACTG-CATCAGAGCACCACCAAG-------CCCCACATACCTCAC---------AAAGC------------ACATATCCAGTAGG------------------------------CTCT---------ATCATTctatattttttccagaaaaa------------------------------------------------aaaaaaagcaacttcaACATAT-TATGAAAAGGTTTGGTGGATACATAAGCA-------------------------------------AATACAGTTAAAAATTATAGAATC---------AAGATGTTAAGT------------AATGTATAATTCTTTCAACTTTTCcacgttttgagtttt---------------ttataataaaac----------aacctgggctt-gctaggcaggcc------tatgccactgagctatatatccccagC----------TCCACTTGACAATTTTAATACAACTCTCC------------AACCA---TTTGGTACCAATGGACAGGCTTTTGGCTAG-TAATGGGAGTGGCTTTAAATA---------AATTCAGACAGCTGAGGAAATTGCAAAACTAATATAAATACTCTTAGAAGCATGAGAAAAAGCTCTACTAAATACAGAGGCTTTATATATTGCTTAATAAGG-AGCTGAAT------GAACTACATATGGATGGAAATACAATAAAGCAATC-ACTGTATACACCAAAGCAAAGAGCCA-TTCTACATAGTAAGGAGAACAGTATGTTGGCCTCCTGTGACAGGCAAGAAAGTAATTACAGCAAATGGTAATTAGTCCCTCAGAAGCTTCCCATTAAAAAACAGATAATACAC

a score=110389
s chr3            94576841 6388 + 160039680 [encoded data, 7379 characters]
s HiC_scaffold_1 139623807 6733 - 233722169 [encoded data, 7379 characters]

a score=9885
s chr3           94589451 273 + 160039680 GGGCTGGAGGCTCCATGTCAGGCCTGGAAGGTGGCAAAAAGAAGCCCCTGAAACAGCCCAAGAACAGGCCAAGGAGATGGACGAGGAAGATAAGGCTTTCAGGCAGAAACAAAAGGAGGAGCAGAAGAAACTCGAGCAGCTAAAAGCCAAGGCCGCCGGGAAGGGCCCCCTG--GCC----ACAGGTGGAATTAAGAAATCTGGCAAAAAGTAAGCTGTTCCTCACATCTGGGGTGATGGTGACCCTCCTCTTCCATTCCTATTTAAACAGCTGGATTC
s HiC_scaffold_1 23131748 268 - 233722169 GGGTTCCGGATGCCATGTCTGGCCACAAAAGTGGCAA---GAAGCCCCTGAAACAGCCCAGGAAAAAGGCAAGCAGATAGATGAAGAGATAAAAGTGTGCAAACAGAAGCCAGA-GAGGAGC---AGAAACTCAAGGAGCCAACA-CAAATGCCAGCAGAAAGCACCCCCCACCGCCCAAAACAGGTGAAATTAAG-AATCTGACAAAACATAAATCATTCCTTGTGCCTAAGATGATGGCGTCACT--GATTTCATTCCTATTCAAATATCTGGATTC

a score=17287
s chr3            94597283 1237 + 160039680 ACAGAGTGGGGTCAACTGCCATGTCCACTTCCAATTCCCCTTGAAGGTCACCTGTTCTTTTATTCCTTTGTTTCCT-GTCCTCTTTCAACACAGCTGGCTCATGTCTTATCTATGCTAAGAGCTGTTGGGACTGGGAGGCAGAGAGGAAGACTCCAAACCACAAAGAAGCCCAGGCACAAAGCCTGAGTG------GGTGTTGGCGGCTCTTGAAAAGTTT--ATTTA------CTGACATCTTATA-TGTAGTAATGTTTACAGTCCCTCAGCAGTTCACACATGAGGCAAAGC--------TCTGCGAGCCAACCAAGAATCGCAGGGAGAATCTGACCCCAACACCCACTCTGGGGGCAGGAGGACACTACTGAAACTCA---GCCTGTGCACCATGCCCAGAGCTGAGCAAAAGGCCTGGCCTGCTCCAGTCT------GTGAATCTGCAATTATAGATCATCCATTTAT-CTCAATCTAGTAATTCCAGACAATTTTTCTAGGAAGTATTATTGACTATGGTC------------TCCCCAGTCCCTCAAGCCCAAGCCCTGGAGCTCACCCACAC-----------TCATCCTTGCATTTAATCTTCTTCTAAAGTTAAAATAGA-TTTCAATCAGCTGCTACCAAGTGGTCTCTTTGTTTGGTTCAGGTGTGGtttggttttctgagaccataagccctg---------gctagcctggaactcactatgtcaccACTAATCTGACACTTGGCTTTGGtttgtgacacaagttctcattatgtaccctaggcttgtgtggaacatataagcactgggcctcccaaatggctgggattacagaggcctgccaccccacccagctCCATCAGTTCTAAATGGCATATACCCTCCAGTGCCCAGGCACTCAATATTAGCACTCAGTTTTCTCCATTCCGCTCCTGGTGCCAGGCAAGTGCCCCAGGGCTCCTTCCAGGAGTGGTTATCTTTTCTTCAGTGATCCTGGGCAGCCACCTCATAGAACATCCTGTTAGTGAGCAGAGGTGGCTACACTCCCATAATGTGGGTCCAGTACCCACAAGCCACTAGGCACTGGGCCAATACTAGGATAG-GGAGACAAATAACCA----CTGCCCTTTAGGACTTCTCAAGTTT-GGGCTAGAGGCAGAGAGAAGGACAAAGAGGTAC-------TCTGGGAGACTGCATACCAGGTGCTGAGGGAGCACTGTAGGAATGATTAACAGTGTC--TGGCACCCTTTGAGGAGGGGGAAATGATT--CCCAACAGGTATAAGCTGTGGGGGGTTT
s HiC_scaffold_1 139640393 1129 - 233722169 ACAGAATGGAGCGTCCTGC--TCTCCTCTTACTTTTGCCCTTGAAGGCCACCTGTGCCTTTCTTACTTTGTCTTCTCATCCTAGTTCAACACAGCTGGCTCCCCTGATCCCCACACCCAGAGC-GCTGGGA-GAGGATGCAATGGGGAAGGCTCAAGAACAGAGAGAAGT--GGGCAC----TCTGAGCACTCTGAGGTGTTAGCAGCCTTCACAAGGTGTGCATCTAATAAATCTAACAGTTTACACTGTGCAAATAGTTA-GGACCCTAGGATGTTTGCAAACCAGGCAAAGTGTGCGGTGTCTGTGGGGCA----------GCAGGTAGAGCCAGGTCATTCCACCT----------------GAAGCTACCAAAGTCCAACGGCCTGT---CAATGCTCAGAGCTAAGCAGGAG-------CTTCTCCAATTTCCTTACATAGACTTGGAGTCAGAGGTCAGCTATTTGTATTTAACCTACTCACTCCAGACAGTCTTTCT--GAAAAAGTAGTGAAGATCTTCAACAGGAAGCATCCACCATTCTCTTAAACTCCTGCCCCACAGTTTGATCAAACCGTCAGAACGTTTCTCCTTCCAGGTAATCCTCTTCTGTGATTAAAATAGAACCTGAACCACCT-----CCAATGG---------------------------------CTGGGaccata-gctcagtggcagagtgcttgcctagcatgcacggGGTC------------------------------------------------------CTGGGCT---------------------GGATCTTC---AGGGCTATAAATACAAAA-CTGATGGCCTCAAACAG--------GTTTTGAATGAGATGTGCTGTCCTGTGCACAGACACTAAGTGTTAACATCTGATTGTCTGTGTTTAGCTCCTGAAGCCAAGCAACTGCCCCAGGGCTCCCTCTAGCAGTGACTGTCTTTCCTTCAGGGATCTTGGTTAACCATCTGGAAAAATATCTTGCTGGTGA-CAAGAATCACTGTATTCTTCCAGCATCAATGGCAGACCCACAACCTGCCTGACA-TGGGCCAGAATCAGAAACGTGGAGGTAAGTAATCAACTCCTGTCCTTTGAGGAATCTCAGTTCTGGGGGGAGAGGCAGACGTAAAAACAAACACTTACTGTACAGTGTGATGAATCCTGTACCAGCCGCTGGG---------------TAATGAACATTGTCTATAGTTTCCTGGGGGAATCAGGGAAGGCCTCACCTCTCAGGTGTCATCTGAGTGGGGTTT

a score=11338
s chr3            94601246 764 + 160039680 TGAGTCTTCAGGCTGCTTGTGATTATACAAAATCTAACAGTCGATGGTTGGAACTCAAAGAACCTGCCACTGTTTGAGAGAAGAAGGAGCTGGGGTTCAGATCTGTGAGATGCCGATGCCT----------GGAGGGTAACCCACGC-AGCA-GCAGCCCTCCTTACCACCCACACTGACCTT---------------TCCCCTTAGTGTGCTCAGGCTGGTGATTGTCATCCAATGAACATGTGACAATTCCAGTCACATCATCCTCTCTAAAAAGGGGAGGGGAGGCA----GCTTGACAGAGCTTTCTGGAAACCTCCAGACCCAATTGTTTCATGA-CAAGAACTTATTTAACTCGAGCAAGAGAACTGACATCTTGGTTAAACACCAAGCCTTCCTTATAAATGAGATCTTTTTGttgttgtttttgagacagggtatcatatagcccgggctggcttcaaatgatgctatgtagccagggatgtccttgaattccacgttctcttgtctccacctccactgcctcccaagtggtagggttacaggcatgccccatcctgtctagctataAATGGGATCTTAAAATCAGCTTTCATTTCACCAAAATGTTTACTGGCCTTTAAAATGTTCCCCGAGGTCTGCCTCTGGTGACATGAGCAAGCAACAA----AACTAGAGAAGGGAGACATGTTCAGCTTTTTAAATAAAATAGTGATTTTCCTATAATCCAATTTCTCTTTAGGCCTGGCCTTTTTTCTTCTGGTGCTGGGCCTAATTTGCAAAACAATCCCTCA
s HiC_scaffold_1 139641990 630 - 233722169 TGAATCTTCAAGCAG-TTGTGAAACTCTGAAATGTGAC---TGGTGACTGAAACTGTGAAGACC---CAATATTTGAAAGAAGGAAGCA----GGCTCAGAGAAGTGAAGGTACCATCCATCCTCAATGTGGCAGGATAAGCCACACCAGCACTCAGCTCTCCACACCACCTGTGCCaaacttcctttctttcctttttccccttcagATGCTCAGGCCAGTGTTCTTTAttctctccagaaaaaaaaa----------------------aaaaaaaaaaaaatagccatagGGCTTAGctgaaatttctagaaatttccaGAACCAATTCTTTCCCGAGTAAGCACTTACTAAGCATAAGCAGAATGA------------------ACTAAAACTTCT-----------------------------------CAGGGAACT-----------------------TGAGGATAAGTTG----------------------------------------------GTCTCATACACATAAGCCTTACACACAAGGCT-------------tacaaatgagtttttaaaatcatctttcagTCTATCAAAAATTTTACTAGCCTGTAAAATGCTCCCAGATCTCTGCGTCTGGTGATATGAGCTAAATACAACCTAAACTAGAACAGAGAtatgttttcaagttttta--taaaatacttaCTTTTCTAGAATCCAATTTCTTTTAAGGCCTGCCCTTTATCTTCCTAGTGTTAGATCTAATTTGCAAAACTACATCTCA

a score=88598
s chr3            94610299 6466 + 160039680 [encoded data, 8393 characters]
s HiC_scaffold_1 139651395 7902 - 233722169 [encoded data, 8393 characters]

a score=44417
s chr3            94621860 2234 + 160039680 CCCCTTGTTAAATGAACTCCCTGAAGAAGGCAGCCCTCTGAAGAGTCTCTGGCTGGGTGGGGCTCCACCCTCCACAAGCACACTG--AGTTAGAAGTGGAAGATCTGACATCATCAGCAGCTTCCTTCCA---------------GGGAGCT--------CACAGCCCGCCCTCTCTTCCCT--ACACTCAGCTCTACAGTGAACAAGGGCCCTTACTTTTCTCTTTCTGTTTGACAGTCAGCGTTCTTGATCCGAAGCTCTTCTAGGGCCATCTCTCCTTCCCTGACTTTCACCAGTAAGGCCTGATGCTCCTGGGTGGGACAAAAGAAAAGGTCTGTAGCAAGAACAGACATCAACACCTTG-------GGGTGAAATGGGTACCTGAACAGGGGTTTGGCTGCTACTGGGCCTGGGACGGTTGCCAAAGAACAGCAGGCCAGGCTGGTTTGATGGG-CGGCCTCCCCTGTCAGGGAATAGCCCTTCCCACTCTCAGCATACAGAAATTTCCCAGCCTCACCCAGCTGCCC-GAGGGAGAACTTGGCCCTGCATTGTGCAAGCCCACCTGCCACCTCTG--GCCAATCCTGGATGAAACACGTGGAATGACT----GGCGACTCGGAAGTCTTCAGAAACCCAAAGGGGCATCTATGTAAGAACACGTCTAAGG-------------------------------------------CGGGAATAGTCTCACCTGC-----AGCAGAAGG---------------AGGCTAAGGCTGGATG-------ACAGACC------CTCCATTCCTAAAACGCTG-----------------------------CACGGTATCAGAATGGAT-----------------------GTGCGAGGCTGCT----------------------------------AGAAAGGGATGC-----------------------TTTTG--------GGGATATTAGG------GAAAGACGCCT------------------TGGGTCCCTTCCTG-CCCCAGGGCTAGACTCTGAAGGTAGAACATCACCATTACCGCCTCCATCCCCAGCAAGCGCCTCTGTAGCTCCTCGATTTCTGCCGCTTTCTGCTCCACTCTGTCCTCCTCTCTCTGAAGGGCCACATTACTCTGTTCTGCTTCTCGCTGATAACGGCTGAGTGTGACCTACAACATAGAAGGG---TGTGTTCAATGGTGAAAGGGAAAAGGCAAACATCA---ATAAACC-----------------TTCAAGGGGAAC-CTGGAG------------------------------GGGCCCATCAGGACTGCTATGG-------AGACTAACT---GGCCCCTCACAGACTAAGTTCATCTCCAAAGTCAACTGGCACA--CGGGTCATCA----------------------AGACCCCCT------------------GGTTGATATCTTAGAACACCTCCACGACCCTTCCAGGGCTG-ACAAGCTTAACCCAATGCTGTGGCTTCCTTGCTGG-TCAGAAGCAAATAACCTAAGAGA-----CACACTCCTATCTTTCCACTTCCCTTGGTATGGCCACCTCCATGCCAAGGCCAACCCAGTGCCTG-----------------------CACAAGGTGCTGCAG--CAGGCAGTGTCTGTCCTTAAGCAGCC--TAGAAACCACACTGGAA----CGAACAGAA---------------------GGG-----------------------------------------TTCCCAGT------------TGTTAGAAT--GAGAGTAAAGAAAGACCTTGCCTTGTTTCCT-CTGCTCTCATCTCACCAATGCCTGCTTATCCTTCAGGTC---------------------CACAGATATCCCACCTA-AGCACCCTCCTAGCCCTGGGAAAGTTCTTCTCAGATTCAGTGCACTCGTGAGCTCAGTGCAAGTTCATGGCAGACAGGTCTTGGTTTCTTCCACAC----CTTCAAAGAGCCAC----AAAGTTCCTTGCATACAGGTCTTGG--TGGAACTGGTGCTCGTTCAGTCCATTTCTCCCCATC--ACAAATAAAGCTAGGCAATGGCA--------GGCCCATGCTCCCTCCAGGGTATGTCGCCGTCCACTTCTCTGCTTC----------CCACCCACCCCAGACACCTCATCACTTGGTAAGAGAGAATCCAGATAAGCTCTGGAAGGCCTGGATGAC----AGAAA----------GCAGCCAGGTTGTCTGGTTATTCCCAGTCTCAGAATCAGGGTAGAA--AAAGCTTGATGCGGAAAATATTATGATGGGACCTGTCCACATAACACAGCTGCCCTAGCCAAGCAAATTCACTGCAAATCCCTCCTGACAGCAGGCAGCCAGCAGGAC-AGGAACCCAAGCTTAATGACAGGCAATATTTATTATAATTATCAATCTTGCCCTTCATACCCCCAGGTTCAAAAAAAACCAGACTGGACAATCTTACTCATCAGGAGAGGTTAGGAAACACCCTCAAT-----------------------------------------------------------------------------------------------------------------------------AATACCTAT--------------------------------TAGCCTAAAATGGGCCAGCTTCCTGGGCAGGAGCTTAGA---ACAGGGGCTCTCATCTCAGTACATAAATACCACATGCAGGCTGATGTGTGCATAG----CAGAGCTAACAAAGCCTTGGTCTAAATCTCCAATT---------AGGATCACAGAGATGCAAAAAACAAACATAAAAAAAC
s HiC_scaffold_1 139662740 2861 - 233722169 CCCATGGAGAAACGAGCTCCCAGAGGATGGCGGCCTTCCAAACAGTATCTT-CTGGGTGGGGACCCACCCTGAGCAAGCATGTTGTGAGTCACAGCTGGAATATCTGACATCAGCACCAACTTTCTCCCCAGGCCTGGTCGCTGTGGGAGCTGCAGGTTACACAGCTTGCCCTGTCCTCCCTGAACCCCCAACTTCAGCATGAACAAAGGTACTTACTTTTCCTGCTCAGCTAGGCAGTCAGCCTTCTTGCTCTGGAGCTCCTCTAGGGCCATCTCCCCTTCTTTGACTTTCACCAGTAAGGCCTGATGCTCCTTGGTGG-ACAAAGGAAAGGACATCTAGTT-GAGCAGATAGCAAGAGCTTGTGTGTTGGGGTGAGATGGGCACTAGGATTGGAGCTCAGCCCCTACCAGGCCTGGGACAGCTGCCAAAGAGTGGCAGGCCAAGCTAGTTTGATGGGGTGCCCTCCCCTGCCAGGGA-TAACCCTTTCTACCCCCAGCACACAGCAACTTCCCAGCCTCGCCCAGCTGCCCGGAGGGAGAGCCTGGTCTGGTATTATGCAAGCCCACCTGCCAGCTCGGCAGCCAGCCCCAGAGACACCAGGCAGAGTGGCTTCTAGGGAAC-----AGTCTTCAGGAGCCTGAAAAGGCACCTGTGTAAGAAATGAACTAAAGGAGATGGGGAGATGTCAGTTAGGGGGTAACTGACACTGGATAATGGAAAGAACTTCCCATGTCTTAAAGCATAAAGCATATTCAAAAGGACATGCTaacactgggtgtggtggcacatgcctgtgagcTCAGCTTTCagaaggctgagaaaggagggttACCATGAGTTCGAGCCTGTGttatataagtgagttcaaggccagcctgcactacatagtgagatcctgtctcaaaataaaacaaaacacaaaaaatgaaccaaaaaaaaaggatgcaCCAGAGCTGTGAAGTGTGCTTTTTTTGGAAAAGGAGAAATATTGAGCTCCCCGAGGATGGCCTCAATATTTCCTCCAATCCTAGGTCCCTTCCAGACCCCGAACCTATGCACTGAAATGGG------GCCCTTACCATCTCCATGGCCAGCACGCGCCTCTGCAGTTCTCTGATTTCTGCTTCTTTCTGCTCCACTCTGTCCTCCTCTCTCCGAAGCGCGACATTTCTCTGTTCTGCTTCTCGCTGGTAGCAGTCCAGTGTGACCTATGACGCAGGATAGGCATGTTTTCAGTG--GAGGGGGAAAAAGcaaacatgatttaaaaacttaGAACAGAATTCAAGATTCCAGGGTAGCTCTGGAGCCATGATGGGTGAAAGGAGGCACCTCTGACAAGCACATCAGCATCTCT-TGGCCCAGTTAGAGCCCCTGGAGGACCCATGCAGGCTGACTCCATCTCCAGGGTTACCGAGCACAGGCAGTTCATCAGCTCCACGTGAAAGTGACACCTGGACTCCACAAGCATCACTTTGTAGGAGGCTGGCTTCTTC-AGCATCCGTAGGAATCTTCCAGTGTCACCCAAACGGTACCCGACACTGTGGCTTTCCTATTAACTCAAAAGCAAATAGCCCAGGGGAGGATGTATCCTCTACTTTCCCAACTCTTCTT--------CACCCTCACATTGAG--CAACATAGAGCTTAAGAACAAAGGATAACAAGCATTCTAGAAGGGTTTTCAGTACAGGCATAATTTATCTTTTATCAGATAGGAGAAGCCAATTTGGAAGACTGAAGCAGAACTTTACATTTGTTACGGTTTTGGGAATTGTGcattgctaggcaggtgctctaccaccaGGCTACCTCCCCAGCCTGGAGGCAAAATGTTAGAATAAGAGAGTAAA---------------GTTTCCTCCCACCCGTGTCTCACCAAGTCCTACTTAG-CTCCATGTCTGGGAAGGAGTCCTTGGACGACACAGTCCTTCCCTCTACAGCACTTGCCTGATGTTGCTCAGGCTCCTAT--------ATGCACACCTGAGCAGA-TGAAGGCTCCCGACCGCACAGCCTCAGG------CACACGAGTTCCCATGGTGCCTCGGGAACAGCAACTGTTCAACAAGGCTGAGAATGAAACCCATGTTCGTTCAGGCCAATCCTCTCCTTTTAGCAAAGAAGGTT---TAACCGCACTGTTCAGTGCCAACACTACCACGCAGTTACTTCAGTGCCCATTCCACTGCTTCCAAATACTTGCTACCTGCACT-GACTCTGAATTATTTGGTAAAAGAG--TCCAG-TAACCTCTGAAAAACCTGCACAGCCCTGGGAAAGCTGATGCCGGCAGCCCATGTGTCTGGCTCCTCCTAGCATCAGGATGAGGGAGAGAACAAAGCACAGCATGGCAG-----GTGAAGGGGTGCATTCA---------------------GAGCGAATTCACCCCAAATTCCTCCTGACAGCAAACAGCCAGTGGAATAAGAAACCCAAGCTTAATG-CAGGCTATCTTCATGGTAACTGATGATCATTCCCTTTCTTCCCTCAGGTTCAAAAAAATGC--ACCAAAAGGTTCAACTCCCCAGGACAGCTTAAGAAACACTATCAATTAACCCGTATTagctgggcagggtggcatgcaGCTAtactctcagcactctaggaggctgaagcaggaagatccctgGAGTTTGAGACCACCCCAGGCTaaacagtgagtttaaggccagcctggaatatctactgagaccattttttttttttaaaggacaataATAACCTGAAGTAGGCCAACTCCATGGGTAGAAACTTAAAAGCAAAAGGTCTCTGATCTCAGCACAGAAAAACTGCAACCAGGTTGATGTGTGCCCAGTGCACACTGTTAACAGGGTCATGGTTCAAACCTCAAAACCCTCATTGGAGAATCACAAAGGtataaaaaatacaaggaaaaatac

a score=18499
s chr3            94627620 851 + 160039680 ACTCTAACAATAATTAA-----------------GGTGACAAGGCTCTGTGTGTCCACTGGCATAGTTTATTTCTCATCAAGACAGATTTattcactctctcagtccacatttatgaaatacctacctcatgccatgtattataccaggccctggggttctgagcctgatggca--------atggtccctgcccacaaggaATCTTCGACCCCAG-GATTCTCATTATGGGA--CAAAGCAATGACGTCTGAATTACCTGT-------TGTCCTAGACTAGAACTATCCTCGACCTCAGTGGAACAAAGACTTGAGATCTAACCTTCAAGGACTAGCCA--Tgctcggtggtagagc--------atggcccaaca-------------------cgcacaaggcataggcaggtctgttctcagtgctgcagagaaagaaGGACATGAGCTTGGGCCAGATTTGGACCATAAACACCCTAACATCTGAGGAAAGCAAAGGCA---GGAAAATGAGTAAGGCTTCACAGCGGTACATTTCTTGTAGGCTGCTATCCATCCAGAAAA-----------ATGCTGAGAAAGTCACTGGCCCTTCATCCAGGAGCCAGTCCCTCTGGGCACCCTCTCTTCAGATGC-CAAATCTTACCTCAAAGGCCACACGGTCTGACTGGTGTCGCCGCTCAGCCTCCCGCAGCTTGACAAGCAACTCCTGCACAGTCTTCTTCAAGCTCTCAACATCTTCACTCATGCTAGGGTCCACCTAGAACAGGAGCAGAGACGGGAAGGGAAAGCTGCCATATCTATGACTTAGTAAGAGAAGATCCCCTCCAACCCACCTGCCACACTGGGATTTGGGCTATCTGTGGGATTACCCTCACACAAAAATTAGTATCACACAGGGAAGAGCAACCGAGTTTTGAG
s HiC_scaffold_1 139666594 860 - 233722169 ACTGTAATAATAATTAATTAAGACACTTGCTCCAAACCACAAAGCCCTCGGATTCCACAGATACTGTTC---------CATGACA-ATGTGCCCACACCCCCAGTTCACATTTAGGAAACATCTACCTTACGCCAGACATTCTGCCAGATACTTGG------AACTCGGTGGTACAGCAGTGATAGCTCTGGTCTACAGACAGCCTTGGAGCTCAGTGGTGCTCATCACAGTATGCACAGAAATGT--------TTTCCTGTGTGTGGGTGGCCCAG--------------CAAGCTCAGAG--CCAAGGGCTGGAGC------------GGCCTGGacaggtgctctgccactgagctacaccttgaGTTCCAAAATGACTTCTGAATTACCCGCCGCCTAAGGCC--AGTACTACTGCTC-CACCTCAGCAGAGCAGAGAACTCTCAACTATGAGCGAGACCTGGGACATGAACACTCTAAATGTTCAG--AAGGAAAAGCACACAGCAAGTGCCACAGGCCACGAAGTGTTGCCTTTGGAGTTGG-TGGGACTCAGCCAAAAAAGTATGGAGTCCATGCTGAGCAAGTCTCTGGCACCTTATCCAGTAGCCAATCCCTGGGGGTGCCTCTTCCCCAAACTCTCAAATCTTACCTCAAAAGCCACACGGTCTGATTGGTGTCgcctctctgcctcctgcagTTTGGTAAGCAAGTCCTGCACATCTTTTCTTAACCTCTCAATGTCGTCATTTACAAAGGTCTCTGCCTACAACCAGAGT-GGGAGGGCAAGGTGACGCCACCACGTTTATGACTTCATAAGAGAAGATCCCCTC-------CCTGTCACATGCTGGTTTGGGTCATCTGTGGGACAGGCCTCACCAGAGAATTAACATCACA----GAAGAGACAGCTAGTCTTAAG

a score=44650
s chr3            94632013 3590 + 160039680 TACACAGATGGCATGTTTAATAAGCACAGTATTTA--AATAAGTATCTGTGCATAGAAAAcaat-----ggtactagactctggataaatattagaatcatttaaagaactgt-------------------caaacaaacctgatgctgggctagagagatggcttagcagttcagagttcttcctgccacacctcctgtccctaccacaaaggatccaa-------gttcagct-cccagcatttacataatggttcacaactgtctgagacactagttccaggggattcaacaccctcttccaccctctgtgggacatacacgtggcacactggaaaaatactcatgaacgttaaaataaagtcctcctgctcagaccacacctcagaacagttgtcctcatctcctgggagaggaccaaggcatcaactc---ctttaaagctttcattgttcatccaaggagcagccaaT-CAGAGATGATGCTGTAGGAGGACCCCCCTACCAA--CAGTCGTTGCTTCTAAGCAGTTAGCTTAGGGTA---TTTTTGCCTTTTTTGTCT--TTGTTGTTT-ACTTTTTATACCA--------------AATAAGTATGAG------------------------------------------GTGGGATGGCCAGCCCTG-------------------------------TTACCTACCTCAGGTGGGCTACTGTAGAGAGTCATGGGACTCTGACTAAAGCCATTTGGCTTTTCTAGTACCACCTGTAAAAAGAAAA-TAAAATCAGGAGTTAAAAACAATTTAACCAAGCAAAGAATTTTGAAGCATTATATTTCTAAGTCGTCAAATGGTACAgaccagtgagatggcccagaggcacttgccaccaaatctgacaatctgagttcaatccccagaactcccacaagttgtcccttgacatccacatgtgtgttgtggcataagtgcatgcacatacacaTTTACATGTGTGCTGGTTCACATGCAAAATAAAGGTGAAAACATTTTTTAATCTTATaaggaaagagagagggggaaaaagagggaagaagtg------ggaagcaggaaaagggtggaatggagacaaacagaagagaggagaggagcaaggga----------gggagACAGA--TTTCCACTGCTCCAC---AAGAAAACAGAAAGTAGAGGGTCTTAAAATGGCCTTGAGGGAA----CTATAACCT-GTGGGGTGGATGAAACAGACCTCAGGCTAATGCCTGCAGTGGACTGGAAACCGTGTGAGACACATCCCTCCCAGGAGTACAAGCCGCTGCCTGCCATAAACACTGCGCTCTCTGTG---GTGGAAATCCTGACAGGTTTTGACCAAGCATCCATCAAAAAGAAAC----CTTTTGCTATGATC-CTATCTAACCCAAAGCCAGACTGCTCACCACACGACGACTGCTATCTGTGCCAACAAGAGGCCTGGGCTTTGTGGCCTGACTCTGCACACAATACTCT----GGTGCCTCTCACCAGACAGGTGTGACAACTGCCTCTGCA-GTGCTGCTT-CAGCTAAAGCAAATTAAA----GGTGGAAACGGTCACAACAGGAAACCCAGTCAAGACAACAAGGAACCCACCCTGCACCAGCTACTAGGCCACTGTTCCCTTCCCGACA--------GGGAGGAGGCTTCTGGAGAAAGACCATCTGACTCAAACCAAAAGGCAAACAAAGGAGACAGAAGTCTGATCTCAGGA--GCCCAAGTGAGAGGTTGAGAAGACATTCCCTACTTCTGAGAATACTCCTTTCCTGGAACTTTGAAACAGCTAGAATCCCACAC--TAG------CCTCTCAGATTAGATTTATATA--CTGTTTGTCCCTACATT-GTTGATGC-TTCCACATCCTACATCCTAGGCCAGGC-TAGGGACACAGGGACAGAATGGTGAACCCCTAAGGAGTCCAGGGCT------GAGGCAGGACTGGATCAAGATTTCCACTTTTGGACTGAGGAGGtggcagcacttgcagaggacctgactttggttcccagcacccatacgcagcacataaccatctctaa-----tgtcagttccaggaacctaacactcttt-----tggcctcctgggacactaggcacacgcatggtatgcaaacatgggcagggaaacgttcatacatataaaatgaaaataaTAAATCTTagctgggtatggtggtgtccatctctaatcccagcatttgaaaggcagagactagtggatcgctttgtgttagaagccatcatggtttacatagtaagttctaggatagctagggctacacagaaagaccttatct---------------------------------caaTGgagagagagatgg---ggaaggagagagagagagggag--------aCATTGA-------------------------TTGAGAGATGAAATTAACAGACAAA--------------------AATCTTTATTAAAAAAAAAAAAGACTTCCATTTT------ACTTAGGTTCACCCAAGTTCAGCAAGATCAACTTACAAGAAGTTTGGATCCATAGTTG---------ACTGTCT------------------ATGACTATGTACTGGGAACACAA-----------ACTCTGATAATTTTCAGGAAACCAGATCC--CTGATACACTCTCCCTTCCTGACCATGTCTTGAGAGTCAGCGCCATTCCAACGTACCTGTATCTCCTGCTGACGCAGAGGGTCTCCTGGACTCCTGTCAAGCTTGCTACTTATATCCTCCCGGAGCTTCTGCAGGCAGTTCCTGGCCTGGGGAAGAAGG-----CCTGGCACTTGAGATTCAGGGCAGGGAAAGGAAACACCTTTGGGTCACTTCCCCAACCCATATTATTCTCAGTCTGGCATGGTTCTAACAGTGGCTGCAGACAGAGGAATTGTGTTCAATGGGGGTGACAACCCAACCTCTCTtgtacaaa---ccagatatattaatcgcctcctctggcagtgctgacatgctagttgagaagacatgggacacaaaagacaaataag----atgtgcactacagaatccagtagtaagtgctaagaagccaggcaggggc---agggaaagactggggaaggtgagATTACAACCAAACA--GATGACAGAGTGGGTTGATTAATAGATGAGATTGAAAAGGTCAAAAATGTTTTG-Tgacagcgtctg----------tcagatc-------tctataagtttaag-------gccaacccagttggcatagag----ttccaggacagtcatggcttcacagagagatcctgtctca--------------aaaaaccaaGTA--------acaagtaaaaatgt--------------ataaataaata---------taat----ttgatgcacagga--aagcat-----aggggccgggtggtggtggtgcacgcctctaatcccagcatttgggaggcagaggcaggcagatctc---tgagttcgaggcctgcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcatagcataggggcacttaagtagtgacataAAAGGAACAGAAGGGAACCATCAGAACCCATAAAAGAAGGTAGCTCTGAAAATCTAAGGTTCAGGACATGTAGGTATTCCGTCCAAGGAAAGGGGTCCGCACCTCCTGGATGTACTGGACCTCACTCTTCAGCTGGTCGATGTTCTTCTCATGGGTCATCTTGTCCCCAGACCTCCCTTTCAAGTAAACCTGCAGTAAAGATGGCACTGTTTAGTTAAG--------------------------AAACACATAGCCCCATACTCAGGAGGAAGGAA-----------CTCACCAGGTGACTATCTGGTGATTCAGCTTAGCAGAGTTAAAAAT
s HiC_scaffold_1 139669230 3672 - 233722169 tatGCATATGGTATGTTTAATACACAT-GTATTTATACATGAGTAGCTgtgaatagagaaaaaaatataggtTTTGAATTCTGGTTAAACTTTAGAAACATCTGAAGAGCTTCTGTGTGTTTTTCTCATACACAAAGGGACTTGA-----------ACACAGGGCCT--CTGTACTAAGCTACCTcgtcagccctttttaattttgagaca--gggtctcactaagttgttcaattgcccaggctggccttga--acttatggctgTCTCAT-CTCAACCTCCaagggttctgggatt-------------------acaggcatagggCACTCTGAA-----------GAGCATTTAAA---AGTTTTGATGCCCAAGTCATATCTCCAAACAGTGATG---ATCTCTGCAGATGGGATTCAG-----AATCCTGTCTTTACAGCCCCCAAGGTCACTGCAATGAGCAACTGAGGCCAAGGCACAGCTCTAGAAGGATCTACCACCCACTTCAGTC-----TGCCAAGCAG--GGCTAAGGGGAAGGgcgtttccatttttatttacctATTGTTTGAATTTTAACACCACGTATTACTCTTAGAGTGAGCAGGAgagatagtttaaaaaaaaaaaaaagagagagagagattagggaGCAGGAGCTCCTGCCCTGGGCAAACAGCAGCCATCAATGTGTCTCCCCATTACCTACCTCAGGTGGCCTGCTGTGCAGGGTCACAGCACCCTCACTAAAGCCATTGGGCTTTTCGAGCACCACCtatgcacagaaaaacaaaagtgacaGTTGAGA-CAATCTAACTAAGCAA----------------------CCAAGCAACCAA-------------------------------------CGCCAAAACTG----------TTATATTCTTAAGACTTCTAC--------------------------TCTtagagcaaaagagaaaggg-----------agaagagggaagga-aacaTGAAGGTTAAAAGGAGA--------TTAGAggcagaagggagggaagaggaaaggaaggagggaaggaatgtAAACAGGGagtgaagagagggaagaaggaagaagagttaaaggaaagaagggagaaagggaaagaggaaaagggagacagAGATTTCCAGTGCTCCACGGGAAGGAAGCCAGAAGGGGAGG------AATTGGCCCAGAAAGGTGATTCTCTAACCTTGCGAGGAGAGACAAAGAGATCTCAGACCAAAACTTTCAGCAGATTGGAAAATACGTGAGGCCCATTCCTCCTAGGAAAACAAGCAGCTGCCTGCCA--------GTGTTTCTCTTGCCTATGAGGATCCTGACAAGGTTTGAC-AAGCATAAATCAAAAGGGGAAGCAGCTTTTGCTATAATTATTTTCCAACTCAGAGTCTGATCAGTCATTCTATGAC------CTTCTGTGCAAACAAGGGGCC----------GGCTGGTCTC------CAGTACCTGAGGAGGCACCTCCCAGGAGCCAGAGAAGAGAACAAACACCGCATGTCTTGCCTGCAGCCAAAGTGAAATCAATCAGGGAAAGAAAGGCCACTGTG-------CATGCTTGCCAGAGAGAGGTGCTTCCTG-ACCCCCTGGTAGGCCACAGCTCCCTCCTGCACACTGAATGGGGACAAGGGCTGCTAGAGAAGGACCAGCCTGCCCACATCAAAATACAAGGGAAGCAGACACAGCTCTGAGTATGAGAAGGATCCACTGACTGACCAAGAGTCAACTCCACTCTACTGAGGACGCTGTCATCCTCGAAATCTGGAAAAGCTAAAAAGCAAGATGGTAGATTATCCTTTTCAGTTAAGATTTATCCAGTCTGTTATTTCTCACATTTACTGATGCCTTCTGTATCTCATACCCTGGGCCAGGCATAGGGATACAAAGACAAAGTGATGAACCT----GTAGTTCATGGATTTTCTCAACTCAAGAGTAAAGACAGCTACACACAATGAACCACAGGTGAGGACTAAGCCTTCAG------TTACATTAGTAGGTGTCACCCAAATTTAGCATGATGGGCTTACTAGAAGTTTGGATGTACAGGTTATTTTCTACTTTCTGTGACTGTCTTACTAGAACACTGATCACA----------------------------AAATCCTTACAGATAAAAGG------------TTTTACTGGGTATGGTgtcacacgcctgtaatcccagcacttgggaggttgaggtaagaGGA-------ATGTTGGGAGT--TTGTGGCCTACATAGTatattcaaggccaggctgaaataCAAAGCAagttccagtcttttttttttctgtctttttgagacagggtctcactatgcagttcaggctggccttgaactcaattggtagtccaagctggtctcaaattcaaaagcaatcctcctgcctcagcctcctgagtgctgggatta-caggcaagtgccaccatacctggctccgagttcctgtcttaaaaaaaaaatactaaatttttccAATAACTTATAATAACATGACTTTTAAAAGATTGATTTTGAGCAATGTTCCAGAAACAGTTGCAGTAATATAGTGGCTGATAAGTGTAAAGCAAGCATGAACCTGT--TGGGGGCCCAACCAGGTTACACACTCTGGTA--------GAAGCCAGCACCACCTACCATCCCCTTGCTTCCTGGCATGGTGCTG-GATTCCACACCATTCCTTGTTACCTGTAGTTCCTGTTGATGAACAGAGTCTTCTGGATCCCTGTCAAGCTTGCTGCTTATATCTTCCCGAAGCTTCTGCAAGCAGGTCCTAgcctgggggagggggaaggacaTGATGTTTGAGCTTCAGAGTAGGAAAGGGAACAACCTTTGTGTCCCATCCCCA----------TGCCTAGTC---CATGCCGCCATGAG-----GCTGGCTGAAGAGTCACAT------GGGACAATGGCCCAGCTGCTCctatacaaataacaaaataaatgaaccCCCTGCCCTGGTAGTACTAATGCCC-----------------AACACAAAGGACAAGTAAGGAAAATGTGTGGCATATTATGTGGGAAGAAGTGC--------CAGgccggggttttag-------ctcagtggtgttaagtgcctgcctggctctgGTGGCGGGGTTG-------------TAAGTTCAAAAAGATC-----TGTTCTGATGACAGCATTtaggccagggattcagctcagtggctgctatgagtttggtccctggtaccaaaacaaaaaacaaaaagaagtgcCAAGGAGAAATGTAGC----CAGGGAGGGGCTGTGACATGGGGAAAGTGGCTGACAATAAGGTATTTGGTGCAAAGCTGGAAGTGTGTTGGCAGCTGGCAATTAATAAGCACTCACTGATTAATGGAGTGGATTCAAAGGATCAAGAATGATCTATGAACTGGGCT-TGGTGGAgcacgcttgtaatcctagcagttgggagactgaaacaggaggatcatggatgaattcaagaccagcctaagctacaaaatgagttcaaagccatcctgagatgcatagggagaccctgtctcaaaaagacaataaataaataagaaaagaatctATGACACATGAGAGG------------TTGCAATGGCACTtcaatatt---acaaaaataaaggagaaaaa-----agaacctATAAAAGAAGAGAACTTCCAAAATGTCATGTTTAGAAAA-GTAG---------CATAGGGAAGGTGTGCCCACCTCCTGGATGTACTGGACCTCACTCTTGAGCTGGTTAACACTCTTTTCATGAATCATCTTATCTCCTGATCTTCCCTTCAGGTACACCTGAAATGGGGAAAACACTGATTAGTTAAGCAACATCTAGGGAAATTTATTCATGTAAACACACAGCCTCACATACTGGTGGAATGAAAGTACATTGTTATTACCAACTGACTA----GTGATTCAGATCAGAAGAGttaaaaat

a score=28521
s chr3            94638722 1081 + 160039680 CCAGGTTCAGCCAAAGCCATT--CACTACAG---ACTCTGGACTTTGGGTATTAAAATCCCT---GAAGCTGAGCAGAAGCTAGTATATGTG-TGTGTGTGCACACACACACACACTCTTTTCCACCTACAAGCTCTCC--GTCAA---TCAGCAGCTCCCTTT-GTGTACCTGCAGGGGTAAAGTAGAAAGAAAAAGGAGGGTAGGCTGAGCTCACCTTAATGATCTCTTCATGGCCATCATGGGACTCCACCAGTTCTGAAGCCAGAGAATGACCTGAGGAGTGGCCAGGCATCATGGCATAGGTCTTCCTGCCCGCCTGCCAAAGAGACAGAGAGAAGTCTCAGAAACCACACAGCAACAAGGATCTCCTGCCTTGACCCACACCTCGAGACCTACAAGAAGCTTCAATCTGACTC--CTTTCC-----------------CCTCCAAGAGCAGCCACACAGCAACAAGGACA------CAGGACAAGGAACGTTAGTAGAAAACTTGGGATAGCTTTCATTTTAGTGGGGGGGAGGGGGTGTCTCCC-ACTTCCCAAAGCAGGAGGCT---GAGCT-AGCTGGGTGTGTCTGAAAGGAGATGCTCTCAGGCTTGCAGCAACAGAGGTGGCTCCAGGCAACACTAAGGTGAGGTACCAGCAGCAAGAAAGAACTGGCTGAGAGGAGGCCTTGCCCCCAACAGACACCTTGATACCTTCTGGGCTATGTGCTCAAGTTCATCTCCTGTCAGTTCACTCTGGAGCGTCAGCCTGAGAATGTCCACGCTGCCCTAGTAATGACAACAACAGCAACAGTGACCCCTTACCTTTCAAGCCCACAACAACG------ACCAG---CCAGAGTGTC----------CTCTCCAGCAGGCCTGTCTCTC-----CCTATTCAAAGA-----------GAGTCCCAGAGAAGCATTCTCAGATCACCCAATGTCAGGTCACCCTGGA----------TATTAGGTC--TCTAGCAGGCCTCTGTCCACACACCTGAGAATGACTATACA-AGCCTATGGCTCCATGTAGCTCC--TGGGACATACCTTGATGCTCAGATCACAGGA-ACACAGGGCACAAATTACTCTTCCTCAGACAGTGGAGAAATTATCCCCGGACTGCTAGCTCCAAGTCAGTAGTCTT
s HiC_scaffold_1 139674996 1122 - 233722169 CCAGGGTCAGACTGCACCAGTGCCACTACAGGCAACTGTGGCCTTCTGATACTAAGATCCTTCCAGAAGATGGGCAGGAACCAGCATCCCTGATCTGGCTG-------------ATTCTAGTCAAACTGCAGTTTCCCTTTGGCAAAGTTCAGCTGCTCTCTCTCAAGTGTttggaggaagaaagaaggagaaaatggcGAGGTGAGCGGAACTTACCTTAATGATCTCCTCATGTCCATCAATGGACTCCACCAGCTCTGAGGCCAGAGAATGACCAGCTGAGCAGCCAGACACCATGGCGAAGGTCTTCCTGCCCGCCTGCCAGAGAGAGACAGTGG---CTCACAAACTACTTGGCAAACCAGAGCTCCTGCCCTGAT----GCCCCGTGAAAGACTTGAAGCATTAGTCTGATTTTACTCTCCAAAAACTCACTTGAGAACCTCTAACAAAAACCACATAGTATCAAGAACTGCTGTTCCTGATGGCGAGCATTAGTAGAAACTGCAGGTTAgttatagttttagttttagtgagGGA---TCTCCCTGCCCCAGAAAGCAACACACAATAGAGCTCAGCCAGAAGCATCTTCAG-----CGCTTCCAAGCTGGCGGCAGCAGAGGTGGCGCTAGGCAGCACTGGGGTGAG-CATCAGCAGCAGGAAAG----------GAGAATG----GCTCCCACCAGAAACCTCAGTACCTTCTGGGCTATGTTTTCAAGTTCCTCTCCTGTCAGTTCGTGCTGGAGAGTCAGCCTGAGAATGTCCACGCTGCCCTAATAATGACAATGACAGCAACAGTAACCCCTCACCTTTACTGCCTGTGGGTATGAAGTACACCAGGGACAAGAGTGCTTCTGCTAACGCTGTGTGGTGGGCCTTACTATCCACTGCCAAGTCACAGACAAGGAAAACTGGCATCCAGAGAGGTAGCAGCAGCTAGCTCACAGTCAACTCA-CTTGGAGTGCGGCATGTGCTGGGGCCGTCCAACAGTGCTCTCTCCACACCAC------AGACTAAACACCGCCTG----GCCATACTGCCTTGGTGGGGCTGACC-CGGTTCTAGGATTATAGGAGACACACTGCACAGGATGTCCCTCACCTAATCAAGGGAGGGTCACCCCTGGACTGGCATCCCCAACACAGAAATTCT

a score=16702
s chr3           94643061 578 + 160039680 CCTCTTTTTGTAACAG-CCTGTGGTAACCTGTTGAAAATGGTTTACTACCCTCTGGATCCAGAAATCCCTACACAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTTACTTTAAGAATACTGAAGCA--GTCCAGACCACCTGAAGTTTGTTTATC-AAAAGGCCA----------GGGGAAT-------------------------CCATGAA------------------GTACTT-------ATGTAAAAGGTT-----------CCCT------------------------TTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCA--CAGCGGGGCTGGACAGGATTGTTTGCTAA--AAACACTGCTAAAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAAAGGTTTAGCTATAGATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCC--------------AGTATCAGACTCAGGATCTTATTAATCCATATATGAGGT-GCCCTGCCACATGGAGTTGACCATCACTGAAAAGGA--ATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAG--------------------ACTTACAGTTTAGGGATAGATTTAGCACAAAATAAATGTGAAAGGAagaaa
s HiC_scaffold_1 49617611 703 - 233722169 cctcttcctgtaaGAGGCCTGAGGTGACTTGT-GAAAATGGTTCATTACTCTCTTAACCCAGAAA----------ATCATGCAAATCAGGAGGCTCAAAtctttgtgtatattttaagAATACCCAGGAATTGCCCAGGGCATCAAGGGTATGTATACCTAAAAGGCCACCAAGTACCTGAAGGATGGCACATTAAAAAAGCAGTGTGGGGCCAGGAACttacctcagtggcataggtgcctgcctggcaagcacaaggttgtaagtttgatccctggtacaaaaaaaaaaaaaaaaaaatcaaaaaaccaatGTGTGCCATTCTGGCATGACAATGATGGAGTTGGTAGGTGTGCCCAAGGCAAACAGTTGGGC---ACAGGGTCAGTGGCCCACAAAGCACTG----AATTTTGCTGCACATGTTTAAAAATGCAGAGAGTAATGCTAAACTGAAGGGTTTAGATGTAGATTCTCTTGTCATTGAACACACCCAGGTGAACAAAGCATCCGAGGTGCGCTACTGGGCACCGAGCTCTTGGCCAGATTAACATGTGTATGAGCTCCCCCTGCCATGTTGTGATGATGCTTACTAAAAAGGACTATAAACTGTTCCTAAACCAGAGGAGAAAGTtgcacagaagaaaaagatatcccagaagaaacaaaaacttacGGCATGGGAATAAGTTAATCATAAAAAAAATGCAACTAAAAGTAA

a score=11148
s chr3           94643062 527 + 160039680 CTCTTTTTGTAAC-AGCCTGTGGTAACCTGTTGAAAATGGTTTACTACCCTCTGGATCCAGAAATCCCTACACAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTTACTTTAAGAATACTGAAGCA--GTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGG-ATGTGCCCAGGCC--ACAGCGGGGCTGGA--CAGGATTGTTTGCTAAAAACACTGCTAAAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAAAGGTTTAGCTATAGATTCTCCAGTCACTGACACAGCCAAG-TGAACAAAGCACCCA---------------GTATCAGACTCAGGATCTTATTAATCCATATATGAGGTGCCCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAACTTT---CTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAGA
s HiC_scaffold_1 45895143 520 - 233722169 CTATTCTTACAATTGGCCTGAGGTGAACCA--AAAAATTGTTCACTACTCTCTTAACCCAAGAAATCCCACAAATCCATGCCATTCAAGAGGTTCAAATGTGCATGTTCATGTTAAGAACACTGTGACACTGCCAAGGCCACCAAGAGTAAGCATAGCCAAA-----------------AAGTAT---CAGAAAGATCTCACCCTAATGAAGCAATATATGCAACTCCAGTGT--CACTG-TAGCAGAGGTGGCCTGTCCCCAGGCCAAACAGAGGCACTGGACTCAGTGTTGGTAGCCAAAAAGAGGACTGGGTTTCTGCTGCACAAGCTTGAAAATGCAG--AGTAGTGTTGGGCTTGTGGGTACAACTG-AGACTCTCCAGTCACTG-CGCACACAAGATTCACAAAGC-CCCATAAGGGCCACAGCACGTGCTGAGCTCAGGCTTGGGTTAACCCACACATGTG----CACACTGCAAAGAGAGGATCTTTGTGGAAAAGGCACAGATTTTTTCCCAAGCCAAAAGAGATGGCTACACAGAAGGAAAAGA

a score=19886
s chr3           94643072 575 + 160039680 AACAGCCTGTGGTAACCTGTTGAAAATGGTTTACTACCCTCTGGATCCAGAAATCCCTACACAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTTACTTTAAG----AATACTGAAGCAGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTAC-ACTGCTGGTGTCAGTGGATGTGCCCAGGCCA--CAGCGGGGCTGGACA--GGATTGTTTGCT-AAAAACACTGCTAAAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAAAGGTTTAGCTATAGATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCCAGTAT---------------CAGA-CTCAGGATCTTATTAATCCATATATGAGGT-GCCCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAGAC-----------------------------TTACAGTTTAGGGATAGATTTAGCACAAAATAAATGTGAAAGGAagaaagagaaaga
s HiC_scaffold_1 23840274 610 - 233722169 AGCAGCGTGAGGTTACCTAT-GGGAATGGTTTGCTAC--TCTTGCCGCAGAAAATCCCCCAACATCATGCAAATCAAGAGGCTCAAATCTTCATGTTCATCTTCATGTTTAATAC---------CCAGGCCATCAAGGGTATGCATATCTGAAAG---------GCCACCAAGTACCTG---AAGGAAGTCCCATTAAAGAAGCACTGTGTGCCATTCTGGCGTTGCCAATGGTGGAGATGGTAGGTGTGCCCAGGCTAAACAGTGGGGCTGGACACAGGGTTGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAAAGAGTAATGCTGAACTTCAAGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGTACTGCTGTATTTACAGAGCTCATGGCCAGAATAACCCATACATGAGCTCCCCCTGCCACACTGAGATGATCCTTACTGAAAAGGAATCAATTGTTCTTAAACCAGAGGAGGAAGTAGCACAGAATAAAAAGATATCccagaagaaactaaagaaacaaaacattatagCATGGGAATAAattaagcataaaataaatgaaaataaaagttaaaaaaaaa

a score=12328
s chr3           94643082 614 + 160039680 GGTAACCTGTTGAAAATGGTTTACTACCCTCTGGATCCAGAAATCCCTACACAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTTACTTTAAGAATAC---TGAAGCAGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGT-TCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCC--ACAGCGGGGCTGGACAGGATTGTTTGCTAAAAACACTGCTAAAGTTTTGTTG-CACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAAAGGTTTAGCTATAGATTCTCCAGTCACT-GACACAGCCAAGTGAACAAAGCACCCAGTAT--------------CAGA-CTCAGGATCTTATTAATCCATATATGAGGTGCCCTG---CCACATGGAGTTGACCATCACTGAAAAGGAATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAG----------------------------ACTTACAGTTTAGGGATAGATTTAGCACAAAATAAATG------------------TGAAAGGAagaaagagaaagagagagagagagagTGAAG---GCTGGCAGCTAT--------CAGAAGGTGGAGGCAGGAG
s HiC_scaffold_1 85108677 668 - 233722169 GATGACCTGT-GAAAATGGCTCGCTACCCTCTTGATCCAGAGAACGCCCCCAAATCATGCAAATCGAGAGGTTCAAATCTTTGTGTTCACTTTAAGAACACCCGTGAGACAGCTCAGGCCAGCAAGGGTGTGCACGTCTAGAAGTC-------CCCAGG-------TGTCTGAAGGGTGTCACATTAGAGAAGCAGTGTGTGCCTCTCCCACACTGCAGTG-TGGAGTGGGTAGCAGCGCTCAGGCCCAGTGGCGGGGTTGGGCA-----------CAGGCACGGGGCCCAAATGGTGCCGACTTCTGCTTA-AAATGCAGAGAGGGAGGCTGAAC-CGCAGAGTTAAATGTGGGCTCTCTGGCCACTGGATGGACCCAGGTGAACGAAGCACCCAAGATGCCCTGAGTACTTCCAGAGCACAGGGCTGGGTTCACCCATG-GTGAGCTCCTCAGCCCCCACAGCAAGGTGGTCTTTACTG-AAGGGAATGCCTGGTTCCTAACCTGGAAGAGGAAGTTGTGCAGAAGGAGAAGGTATCCTAGGAGAAGCTACAGAAACAGAACTTACAGCATGAGAATAGACTAAGTATAAACCAAAtgcaaataaagtttaaaaaatgtagagAAGAGTTAGGTAAAGAGTTGGATACAGtggcgcatgcttgtaattctgcaaaacccaggaggctgaggcaggag

a score=5998
s chr3           94643091 249 + 160039680 TTGAAAATGGTTTACTACCCTCTGGATCCAGAAATCCCTACACAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTTACTTTAAGAATACT--GAAGCAGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCACAG--CGGGGCTGGAC
s HiC_scaffold_1 46850653 240 - 233722169 ttgAAAATGTTTCATTATTCTCTTGACCTCCCAAACATGACAAAATTACACAAATCAAGAGGTTCAAATCTTTGCAGTCACTTTGGGAATGCCCAGAAACTGCCAAGTCCATCAAGGGGATGCATATCTAAA---------AAGCCACCAAGTATT--GGGAAGATGTTACC-TAGAAGAAGCCATatgtgccacttgggtgtttcaATAGTGG-GCTTGGGAGTGGCACCAGGCCAAAGAATGGGGCTGGGC

a score=14017
s chr3            94643264 366 + 160039680 AAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGT--GGATGTGCCCAGGCCA--CAGCGGGGCTGGAC--AGGATTGTTTGCT-AAAAACACTGCTAAAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAAAGGTTTAGCTATAGATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCCA----------------GTATCAGACTCAGGATCTTATTAATCCATATATGAGGTGC-CCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAACTTT--CTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAG-----------------------------ACTTACAGTTTAGGGATAGATTTAGCACAAAATAAATGTGAA
s HiC_scaffold_1 233280714 421 - 233722169 agagaagcACTGTGTGCCATTCCAGCATTACAATGCTGGAGTTAGTAGGGATGTGCCCAGGCCAAACAGTGGTGCTGGACCAAGGGTCAATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTACTGCTGAACTGAAGGGTTTAGATGTACATTCTGTGGCCATTGAACATACCCAGGTGAACAGAACACCCATGGCAAGTCACCATATTTACAGAGCTCATGGCTGGATTTACCCATACATGAGCTCTGCCTGCCACAGTGAGGGGATCCTTACTGAAAAGG-ACAAATTGTACCTAAACCAGAAGATGAAgttgcacaaaagaaaaagatacctcagaagaaactgaaaaaacaaaaacttatggCACAGGAATAAATCaagcataaaataaatgcaaa

a score=38175
s chr3            94649081 3098 + 160039680 CACAGACTTCACCCCACAACTCCAAACCAGTGCCAAGGATGGAAAATCTAGGGCTCTTTTCCGCTCGGTGAGACCAGCTGTCTTCTGGGGCTAGAGTGGCCGCCGGGCTGTGCTCAGGCAGAAAAGATCTTTAGAGTCTTTTTTCCCCAGAGTGTCTGGTAGAATGGTCCCCACTAGGGCCTCTGCAAGGCTACATGGGAAGTGGAGTCTTCTCCTGGAGAGAAAGAGCAGCACTAATCACATGGTGAGCAGGCCTCTAACCTCATAAACACTCTCCGGAGAAGCCCAGCTACCTCCAA-TTACAA-CAGCCTCTCCACTGTTCAAACAAACCAGCTGCA-TGACTCACTCCTCAAAGCAGGGAGGGGGTAAACACATAGCTAAGGGCTT--AATAGATCAAGAGGCTCAGAAAGTGG--TGATAGGAGATAAATAGGGAGGCCCCAAGGAGATAAACAGGGGGGCCCCAGGGGTTCTCACACCACAGGCTtat-tgaatgggaacagatccatgggaacagcctgtctccctagaacccactctccaggtttctagggagccactaa-----tACTAAGAGTGGGGAGGTCCAGGGTAGAAAGCCAGGGTCAAAAAGGGAAGGGAAA---TAGAAATGGTCTCTGTGCTGAAA------ACCTTTGAGTCACCTTCACCATGT---------------------------ACCCAACTTCTG----GAAGCATATGTAGGCTTACAAACTGCTGCTGTA---------GTGACCACCTT----------AGTCACTGCCAGCCCTGTTTGTGGCTGGCG------AAGCTTATACCCATCTGAAAAAGGACAATGG----------CTATCT------------------TCTTATAA-CACTGGCTCCTGAG-----------------------------------------AGAGGCCAGCATGAGGGAAGCCCCATGAAGTCACAGAAGAGGATGGGATGGAATGGGATGGCTAGGTGCCCACAGTCTCCGAGGGAAGA---CTGGG------CATGCAGGCTTGGTGTGCCTGGT----CCTCCAGGAG--------------------------------ACAAAGAATCTCCTGCCCCTTTTCCTCTTCCTCACAGCTAAACTAAAAAACACAGTTTACCTTTAATCTGGAAGCTTATCCATA-GCACGGACTGGACAAGCATCACAC----------TAG------GGGAAATAAAGTAA----GAGGAGACTC------------AGAGCAACACCCTAGATGGGGCACCCATTTCTCATAATCTGGAGCCCTGCACTGGGGCCTGGCTGTGAGAGTATATACACGGGGGTGGGAGGGGGTGGGCTCCCAAA----AGCT---------ACACCAGCTGTTGACCTAGTCTCCGAACAGGTCTCCCACTTGCCTCAAGCCCAGAGGGCTAG--AGAAAG-------------GGAACCCCCCCTCTCCCCGCGACCAGATACAATGAAGGGCTG--AA----------GCTTCTCTAGTCTCAG-ACACTCTGCCTTTGATTGGGTTTTCCTGGTCTCATACTCTTT-----CGTTTATTACCTCCACCCTATTCTACCACTCCACAGTCTC-CTCTGCCTCTGCCCAGGCTTAAATCTGGGCCAACAGTCTTCCTGGCACACATCCATTCCTCCAACTAAGACTGCCCACCCCTAAGAAAC--AGGTGTTTCACAAGA--CTGCACGGTGACCCAAAGAGGCACATGCCATAATTACCAACAGGCGGGGAGGCTCGTCCCACCCAATCTGAGCACA-GGTCCTGGAACCGAAACCATCCG-GTACACACCTCCCTCCACCCTCGAGAAATATGGGCAATGTTAGTGCCACATGCCTAATGATTAAGT----AATCTTCCTCCTTTATGCCCTCCCTTCCCTCTCCAGGCAAGAAAGCCAAGCTCTCCCTGAATACCTGGCAGCCTTGGAGACCTCACTGAAAAGTCAGAGCTGGCAATAAAAGGGGTAGGGGCAATGGTGTGAAGATAAACTTACTGGATGAGTCTGGGGCAGGG----ATTGAAACAATAGTTTCCAAAcctgaaagattcctccacccaagagtttcttccccacccaggtgtcacggagacaggccttcaatcatattagaattcatttcattggAGTAATCACCAATGATCAAGGAGCGCTCTTATTT-----TGTGtgtatcttaggctggc--ttcagactcactatgtagccaaggatgaattaatcagcttgcttctttctacctcccatgctacgtttacgtggttcaaggaattgaacccagaaacttcacgcatgcta----ggtgaacactcgaacaacaaagctatgtctccagccccTCAATCCTCTTTGAAAATATTCAGTTCCTgggctggagagatggcgccgaggttaagagcactgactactcttccagaggtcctgagttcaattcccagcaaccac--atggtggctcacaaccatctgtaatgggatctgatgtcctcttctggtgtgtctgaagctacagtgtactcata-aatgaaata-aataaatctttaaaaaaaaaaaaGGAAGAAAATATTcaattccattcccaggtatttcactcccaagtaaaaaggaaacataagtccacatcaacttataaaacttcataccagtaatatttacaacagccaaagagtagaaacaactcaaaggtccatcagttattccatgatgaacatatttctatgataatatagttagatatggactatcattcagTTCtaaaaaacaaa---------------------ggcagtgatggtacacgcctttaatcccagtgctcgggaggc--agttttgag-------------ttcagaagtgagcctggtatacacagcaagttccaggacagcttgcgctgttgcacagagaaatccatcttgaaaaactca---aaaCCAAAATAAATAAATaaaacaaatgtagaactaac--atgttacatgtgtatgagcctttaaagcagcatgcaacttgaaagcagccagtcaggaggaccatgaaacacatgactatacctacaagaagggtccatatgaataggtgaa-----atacagacaaagcagacaggtagctgcctgggcttgggagactgaggaggatgggaagtgactgc-caatggatgagatttctctgtgaagtgagcaaaaggttctaaaattgcctcagtgatgaccacgtaactctgaatacactaaagaaaaccacagaattatataccttaaactggtgcatcatgtagcacagttatt------taataaggc--ttataaaaaTGGTTGAAACTCATGGCAAACTTATAATAAATCACATCCC
s HiC_scaffold_1 139684711 3053 - 233722169 CAGAGTCCTCGCCCCGGAACCCCAACTAGGAGACAAAGAAGGGACACCTGGggcccttctctgcttcatcttaGTAACTGGTCTCAAGAGCTGGAGTGCGTTCTGGGTCCTGAGCAGCcctcaggaagctttaaaaacaa----cccaaaaatg-CTGGCAGGGTGGTCCTGTCTGGGGACTCTGAAAGGCAACAGCGGAAGTGGAACCTTCTGGTGGGGGGA----GCAGCA-TAATCACAAGGTAAGC-TACCTCTAACCTCATAAACATTCTT--GGGGAGCCCAGCTACCTCTAAATTACAGGCAGCTTC--AACTGTTCAAACAAATCTCTAGCAGTGACTCACTCCTCAGAGCAGGGAGGGGGTAAATCCGTAGCTGAGGGCTTCCAAGAGATCAAGACTGTCAAACAGAAGCCTGATAGGAGATAAACAGA-----CTCAC-----------------CCCCAGAGGTTCTCATACCACAGGCTTGTGCAAATGGGGAAAAG--CATG---------CGTCTCTCCAGCACCTACTACCCTGATTTCTGCAGGGCCCATTAGCCCTTAGTAGGGGAGGGGGAATCAAGGGTAAAG---TTGctttgaaagggaaagagagaagttaGAGATTGTCCTGGAGCTGGAAAATAGCATCATTAATTTATCTTTGCCCTGTCTTCTGCTTTGCATCACTCTGCCCTCAACCCTGCCCCTATCCCACCCCAAATATAGTCTCTCAAGCTGCTGCAGTAAACACATCTATGCCCATTCTGAGAAAAGGGAACTACTGTCATCCCCTTGAAACAATGGCGCCATGAAGACGCAGTCCCATAAAAGCAaagaagagggggctggggatttagctcagcggcataagtgcctgccttgcaagcagcgggtcgtgagttcgatccccggtaccgataaaaaagaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcaaagaagaggGT--CATGAGGGAGGA-GGTTGGGCATCCATCCTCTCCTGGGGAAGACGCCCAAGCCATCTCACTCAGGATTCGGGCATTTGGTTTCACCTGCTGTAGAACTCTCAAAGGTCAGAGTTGTTGAATACAACATAAAGAa--ccctg--cctttctttcttctggAAGATTAGCCAACAAAACAGTATTTGCTTTTCATCTGGCTACCTACCCAAAGGCATGGGCTGGACAAGGTCCAAGCAGAGAGCTCATAGGTGACTGGGAGGTGAAACAAAAGGGAGGTGACTCCCATTTGTTTAGGAGGTGGCACCC-AAATGGG----CCCTTCCT---------GCACCCCATATTGAGGCCTGGCAGTAAGATT-------CATGTGTAAAGGCAGGTAGGTTCCTGAACCCCAGCTCTTAAGGACACACCCCTTGCTCAGCCA-TCTCTCTGCAGG----ACACCTGCCTAGGACCAAACCAGCTTGGAAGGAAGCGGTAAGTTGCTCAGGGCCCTGCCCCACCTC---------------AAAGGGCTGCCAAAAGTAACCCTGCCTCGCTAGGCTCTGCCCACTTTGCT-----TTGTGCCTTCTTGCTGTCGTGTCCCAGACAAAAGGTAACCATTTCCCCTTTCCTTCTGCATCTCCCAGTCTCAACCTGCCCTCTCCCACGTTT---TCC----------TCTTCCTAGTCCATTTCTATTCTCCCAACTAA-ACTGCCTACTCCTCGGAAACCAAAGTATTTCACAAAACTCTGTGCTGTGCCCCAGAGAGGTCTGTATCATAATTACCAGCA-GCAAGGAAGCTCGTCCCACC---GCTGAGCACACAGGTCTAGAATCAAAACCATCAGAGTGCACACCTCCTTCCACCCT-GGGAAACACCAGCAACGTTGACG----GTGTCAAGTCATTGAGTGGGCAAACTTCGTTTCTCGGGCCTTCTTTCCTACCTCCAAAAGCAAAAGCCTAGCATTCCCCAAATTTCTTGCAGGCTTGGAGATATCAC-------------CTGAACAACAATGAGGCAGATGGGAGGGTGCAGAACTGTATGTGC----TGAGGCTGAGGCCAGTCCACAATGAAGAGACAGTCACCCAACTTGAAAGGTTCCTTTGCCCAGGAGTTTCCTCCCCACCCAGGTTTCACAG--------------------------------TCTAGAGGTAAGCACCAGTGACTCCAGATCAATcctcttttaaaatgcaaatatcctAACCCAACAATTCCAATCCCC--AGTAtttcaagagaaatgaaacatCCATCCACATAAAAACCCATATAC--------CAAAGTTCATGG---------CAGGATTATCACAACAaccaaaggggggaa-----aaacaagagaga---------------------------gaga-------------gagagagagacagagagacagagagaggaacacC------------------------TTAAATGTCCAACATTTATCAATGGTGGTT--------------ATATGATATGAT---------------------------AATATAGTCAcatgatggaatattattcagctacaaaAACAAATGAGCCaggtgatggcacatgcc-------tgtgctTCCAGCACTAGGAAAGCTGGTACAGAAAATCACAGTAAATT----------------------------------GAAGGCTAGA-------caggggtaca-cagtgagttc------aacaccagtctG-------------AAATGTAcaggaaaaccctgtctcaaaaaacaaaaaacaaaaaagaaatgaagccaggagtggtggcacatgcctgtaatcctagcactcaggagactaaggtaGGAGGACTGCCGTAAATTatagaggccagtctgggttacatagtgagttcaaggccagcccggac---tacacagggagatcttgtctcaaatatgcaaacaaacacacaaaaaagaaagaaagaaataaagcactGATAAACATTACATATAGACAAACTCTTAAAA-AATACGTTACT--------GTCATT---GAAGACTAC----TTCATGGttacatttatatgaaatattca---gaacaggtaaattcatagaaaaagaaagttgACTGGTAGTTGCCTAGGTTGAGGAGACAGAGG-GAATAGGGAATGACTGCTTAGGGGCCAAGATTTCTTTATGAAgtgaagaaaatgttctaaaattgatttaTTGATAACTACACAA-TCTGAAGATACT-----AGACCAatgcattgtatattttaaatcggTGAATCGAATGGCATAAGAATTATAGTACAATAAAGCTgttataaaaacatatgaagcTCACAGTGAGCCTCCAATACGTCACAgctc

a score=9211
s chr3            94655577 402 + 160039680 CATGTCATC-----CTTCACTAGACAATCTTCTAACCCTGCCAATCAAGGACCCCTGCCCATTCCTACTTAAGGATAATCTCAGGGGACAATGGCCCCTTTCCCTGGAATCTCAGA-AGGATGGCAAAATGACCTGAACTGGCCAGAA-----TCATCCAGAAGCAGGGATCATCCACATTACTGTCCTGGACTGCCTCGGTTCGGACCTTTTAATTGAAGCTTTCCTTTAACTTCTAGGCCCTGATCTTTTCCTTCTAGTAAACTCCT-CTTTAGCTAGCTAG-GTTACTTTCTGCTGTTTACTTTAGCCAAAGGAAGGTAACAGGATTGTCT------AATGGGTTTGAGATTTATTTGTACT-TTATATGCCAA--TAACTTACCAATGTCACTTTTAAACAAATACTTTTGACATTAAAA
s HiC_scaffold_1 139689516 378 - 233722169 CATGTCCTCGATCCCTTCACTGGGTAATTTTATGGGCCTACTCATAAAAGAACCCTGTCGTCTCCTGGCCAAGGAGGGGGTAAGAGGACAATGGCTCCTTTTCCTGGAATCTTGGACAGAATGGCAAAAATAACTACAACAGCTGGACTCAGTTCATCCAGAATTAGAAAT------------------------TCTCTGTTAG-----------------TTCCCTCCACCTAACCAGCCCCCAAGACTTCCTCAGTTTACACTTCTGCTTAAGCTAGCTAGAGTCATTTTCTATAGTTTACTATGATCAAAGGCAGCTAAAGGACATATCTAATAAAAATAAGTCTGAGATTTATTTGTACTGTTATGCGCTGATCTAACTTACCAAAGTGGTTTGCCAAC-----TTTCTGACCTTAAAA

a score=50610
s chr3            94656478 3036 + 160039680 TTGCACCCTCACTGAGCATGCTCAATGGTATGAGTACATGACTGACGACATGACAGGTTCCCAGGGACTGTCCAGAGCCATAAATTTTATTTACAGGTTGGCTCAGAGGAGAAGAATCCAGGACAAAGCCTGCCTCCTGACTGACTGATTGTTTACTCTCTGCCCTTCCTCAT---GAGCCCAGGAATGTCTCCAAGAGTAAACCAGG-CAAGGGTTATTTCACTCCTGGCTTTATAATAAAATAAGTCTCTCTATCTCCCTCttttgtttttttcccaagac-----------atggtttctctgtgtagccttggctgtcctggaactcactctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccaccgcccagcCATAAAATAAGTCACAAGTCTAGTCTGTCTCCCCTCTGACATATTGCTATTTTC-TACCTCTGCTTTCTGTCCCAACAAACAAGAAAGAAAAGCATCAAGGGACAGCAACGGGTGACATATCCTTCTCTGTACTGCCAGGATTGTGGTTTTAAAGATCCTTCTTCTATATGAGGTGGGTCTTTTTTCTACGTCTAAAAGAAGCTCATgggtctagagagatggctcagtggttaagagaactgtctgctcttccagaggttctgagttcaattcccagcaaacacatggtggcttacaaccatatgtaatgggatctgacgccttcttctgatgtgtttgaggacagctacagtgtatgcataaaaatacaataaatgattcttCTTCCTCTTTCTTTTTTTTTAAAGCCCATGACCCCTTTTATTCATTCCATGTTCTTTCCCTGACTCAACCATTCCAAAGCACCAAGAGCATGG-----------------AGCACTTGAGGCTGGGACAATAGGATATGACTAGTTGTTGGCTGGACTTTGGTTTTGTTTATCTGATTTGGTCAACCTCTCTTACCTGGGGTA---GGCTGGGGGGTGG----GCTGGGCTTTGGGCAATGTCAAAACTTG-----TAATGTGAAAGAAACCTCCATATTTCTAGGCAAAAATGTCGAAGGAGACAGTGAACAGACTTCAATGATCAGCTGTACTCTGAACTTCAAATGAGCACCCATTCTACAACAATTCTTTGAAGA---GCCATAATCCAGCTGTAGCTGGGTTAGCTTTGCCTCAAGGACATGCTGAGACAGGCAGGCGCATAGGAATCAGATGGGGG------------GGGTGGGGGCG----------------------------------------CAAACTCCCCATCACTTTGGCTCTCATTTCATTCTCCACAACAACTTGGAAATAAATTAATTAGCACAGATCTATGGAGTATTTGGATCCCCCAGCAACGACTAGAAACATGCAGCATCAAATTACAGGCCTTTCCCTCTGGAGAGAAAAAAAAATATGTGGTCAG-TTGAGGGTGGCATAAA---GGGAGTGAGGGAGTGAGG---AGGGCATAAAGGGAGCAGGGCAGACTGGATTGCACTGGAGAATGCCCCCTCTCTCT--CCCTAACCCACTCCAGG-------------------TGGGT------TCAGTTCTC---CACTGGAGTTCCGCAGCATCCCCTTATTCCCCTACAG-GGACTTGGCATCTGGACATGAAAGCAAAACCAA-------------GGAAGCTA-CTG--GCTGGCTGAAAGGGGGTTGGGGACCAGAAAAGCAAGATTTAAAAAAAAAAAAAAAGGAGAAATCCAAAAGAGGTGACCGTCGAGCGGAGAGCTCCATAAATCCTCTGGGCGAAAGGTAGAATCTGGTACCAATTCCGTAGTTGTCTGAGACCTATCCCGCCCACTCATGCTCTCCCCTCTCT-----------CCTAGGATTCGACCCTCTGCCCCCTTTC--------CTAGTAAAAGGATCGCCATCACAGAAGTCTTTGAAGGGGTTCTGAGGCCATCGGGAAACGC-GAAAAGGCGTAACCCACCTGGGCCGG-CGCAACGTCCGAAACAGCGCAGGGATCCGGTCCCTCGAGCG---TCTTCCACGACCCAATCTAGCTGCCCACGAGACGCCTGAGTAACGCGC--------------CCCATGCCCGAGCCGGGGCTACAGTGTCCGCGCCAAGGACAGGACC-TCCCCAGCCCTGGAGCTGCCAGTGTTTCGTCCTGTGCTTCCCACTCCACAGTCCGCCACAGGGCAAAGGAA----AAAGC----CCACGGAGCGACGCGGGGCTGACCGCACTGAGCCCGGCGTCAGGTGAAATGGGCTACCTGAGCCTGAGGCACGCGAGCGGCGGAGCTGGAAAGCCACTGTGCCTGAGTGGGAAGGCGGGGTGAAGGTGACGACCTACCGCGGTCTGGCTCTCCGGGTGCACGTCCACCAAGGTACACCAGTTCCGCGTCCCGTTCAT---CTTCACGCGGAGGTCGTATGAGCT-------TCCTCAACTCCGAGGTCCCGGGGAAACTAGGCCGGCAGGCGGGTGCGCGCGCGGAACCGCCCCCTAGTATAGGCGCGTCGGGGGCGGGGCTGAAGATGGGCCACGCCCAGGGCGGTATTTA-TCAATGAGGTAGAGCGGAAGCGAGAGGTGGGCGGTGCCAAGAGGCTTCAGGACTCGCCTACCCGTGCTATGGAC---GATTTACGTAAAGGTGAGGCTTGGGAGTGAAGGTCGGGTGACCGCTTAGGAATTTTACTAAGGGTACGACAAGGTATCTTGTGGTATCTCATTGGTCTTT---TTCCTTTCAGTTTTCCAGGTTCGGT--------GCGGGAAAGAATCGGTCTGGTCGTCT----------------GAGTTGGGGCTTGCACAAGCTTCTGTG------------GTCTTTCCTGAAATGTAAGCCAGCCTGTAGGCTTTTTAGAGCTGAGTACATCTTTCCTCAGAGTTCTACCACACAGGTAGAAAGGCAGGCACCAAAGA-CCAGCTCACTCGGACTAGTCTAAGCCAGTCTGGCAGGTGCTTTTTCCTGGCAAGTAGCCCAGGTCGAAGTCAAAGCCAGCTAAGCTCTGGGTGGGGCTTGCTTTGCAGAAACTAGACTTATATGGTAGGGAGAGGCGGGACACATGACCTTAAAAGGAATTTGCACCCTAGAGAAAGAGTCTTAGTGGCACCAAAGGCAGTTGCTTCCCAAGCTTAGGCTGGGATCTTGAGGGCT
s HiC_scaffold_1 139690871 2725 - 233722169 TTGCACACGCACTGAGCATTCAT---------------TCAGTGAACACCTGACAGGTTCCTTTGGATTATCCAG--CCATAAATTCTGTCTCCacactggctcagaggagaggaaTCCAGGGCAATGCCTGTCTCCTGACTGATGAATTGTTTACCATCTCCTCCCCCTCTTTAAGAGCCCAGGAACATCTCTAAGAGCAGACCAGGACCATAGCTATTTCATGCCCAGCTTTGGTGTAAAATCAGTTCC----------------AGGTTCAGCCCAGAAAGAACGAATAAAAGGGAATTTCTGCCT---CCTTCTTGCTCCAgagttctttctctcttct----tagcTTCAAACCCAA----------------------------CTGTGGTTGGAGA--------------------CTATGAA----------------------TTCCTTTCT-------TACTATTTTCCTACTCATTCCTTCTGTGCCACCaaacaaacagtaaaaacatCAAGGGACATTAGAGGGTAGAAATTCATTCTCAATGCTGCCAACATCATGGTCTTAACA------CCTCTAT-------------CTTTTCTGC--------------------------------------------------------------------------------------AGcaagcaaaa--------------------aaagaaatcta------------------------gaca------------------------------------------------CCTCTATCTCACAGCCT---------------------------TTTCCCAGTCTCAATCATTTTAAACCAGCAAGAAGACTGGTTTGTAGGGCTTGAGTAGGGCTTGAGCTTGACACAACAAAGGATGGAT-------------------------TTTCCCCCATCTCTTCAGCATCCAACAGCTGGGGGAAAAGACTGGAGGTTGGTGAAGCGGG--TTTGGGCAGCAGCAAGACTTGCCTAGTAATGTGTCAGAAACATTCATAAGTCTAGGCAAAATAGCC--AGGGGACTGTAAAAAGA----AACGATCGTCTGTATTCTAAACTTCAAATAAGCACctattttacaaatattctttGAAGAAGAGCTATAATCCAGTTCCAGTGGGGTTAGCTCTACTTTAGGGGCGAGCTGAGACAGGCGCGGGCTAGGGAATCAGCTGGGGGCGGCGAGGAGCGGGGTGGGGTCGagtggggtgaggtggggtgtGGGAAGGTGGTGGTGGATTACAAACTCCCCATCACCTTGGTTCCCACTTCATGCTC---------TTGGAAATCGATGAAACAGTTCACAGCTATACTGGGTTTCATTCCCCCAGCAA-GCCAAGAAACA----GCCACAAATTATACTCCTTTGTCTCTAGGGAGGAGAAATCACACA--GTCTGCTTGGGGGCTGTGAGAGCCTAGGAGAAAGAGACTAAGGGCCAGGGAACGAGGGAAGCAGGACAGAAAGGCTTAT-CTGGGTTTTGCCCCCTTTCTCCAACTCTCACACGGTCCAGAAACCCTTAAACCCCTGAAACGTGTCCCTTCTCGCTTCTCTCCCTCCCAGGTTCTGCATC--CCCTTCATACCTCTGCCCCGGGTCTGGTGGCTGGAGACAGATACAAAACCAACAAACCTTCCCAGAGAAGCTATCTGATGATGGCCTACAGAGGGA-AGGGAGCAGAACTGTAAG-------------------GGGGAAAC-----AGTGGGGACCACCAGATGGAAAGCTCGAT---TCCATTTAGCATAAG------TCTTTGATTAACGTCAGAATGATTTGGGTCCTA---CAGCCTCCCACAGCCCCCCAACCCTGAGTCCCAAGACCAAGAATTTCActctctatcctttttttcttgttactgacCAAAG------CACCATAAAATTCTCTGAAGGGCCTCTGTGGTCACCAGGACCCACAGAAAAAGCTTCTTCCAGTTCGACGGGACACAAGGTCCAACAGAGCGCTGGGACCCCGGCCCTAGGACGAGTGCTCTGACGATCCAATCTCGCTGTCCCTG-GACGCCCGAACGCCCAGCAAGGGCTCCTGGCGTCCAGCCGCAGGCAGAAGCCGCAGGGTTCTC-CCAAGGAGAGGAACACCCCCAGCCCTCCAGCCTCGAG-ACTCCATCCTGACCTTCCCAG-----AGCTCACCGCagggaaaagaaacacaagagCGCGACCGAAGCGCAGCGAAGAGCTGACTGCACTAGT----ACACAAGGTGATGT---------------------------CAGCGAACCGAGAACACCA---------AGCAGGCAGGCGGCATGGGCACTTTTTCTTACCGCGGCTTGGCCCTCTGGGTGCACGTCCACGAAAGTACACCAGTTCCGTGTCCCGTTCATTTCCTTCCGGCTGCAATCGTAGCAGACAGCCCACTCCTCCGCCCAGCAGCCCGGGTCCTACCAGGTCC-----------CGTGTGCGGAACCGCCCCTT-GTATAGGTGCGTCAGGGGCGGGGTCGGAGATAGGCCACGCCC--GCTGGCAGTTAGCCAATGAG--CGAGTAAAAGAACAAGGTGGGCGGTGCT--GTGACTTCAG---------ATATGCCCCATAAGCTTAGATTTACATAAAGGTGGGACTTGC-AGTGA----CCCAGAGCTGCTTGGCAGTTT-------GGT-CTATCGAGTATGTGGTTGTACCTCAATATTCATTAGCTTTGTCTCAACT--CCAAGATCAGTTGCAGTCAGAAGTAAACATCTTGCCTGCTCCTTCCTCTACAGAGGATGAGGAGTTGGAACACTTACACACTTCCATacatttttcctcttcctctccctacaCAAAA-----CCTGTGGACTGT--AGAGCTGAGAAAACTTTTTCTT------------CCTCGGTAGAAAAGCAGGCACCAAGGGGCCAACTCAC--AGACTAGCCTAAGCCAGTCTGGCAGGTGCCCTTCCCTGGCAAGACGCCCGGGCCAAAGTCAAAAGCAGGTAGGCACTGGGTGGGGCTTGTTTTGCA-CAGCTA---TTATATGGCAGGGAGAGGCGGGACACATTGCCTTAAAAGGAATTC----------AACAGAAACTT-----CTCAGATGGCATTTGCTCCCCAACACTAGGCTGGAATCTGGAGGGTT

a score=96277
s chr3            94660544 3412 + 160039680 [encoded data, 4135 characters]
s HiC_scaffold_1 139694071 3790 - 233722169 [encoded data, 4135 characters]

a score=16216
s chr3            94664668 644 + 160039680 GAAGAGATTAGAG-CTATTCAAATGGGAGGGGCCATGTAA---AAAAAGGCTCTGGAAACTCCAC-------AGCCAGCA---CTCCTGAATTCAA--AGTCCTCAGTAGGGTTAGAGCAGCCGAGGCCACCGGGACCCTTTCCCCAGACTCCCGTTCTTGGCTTCCTTCCT----------CCAGTCTACCTTTTCCAAAGCAGAAGAGAGCCTGAAGCAGACCCTGCCTTGCCAGAACTGTCCAGGTTATGGATCACAGGAGAGCTAAGGTGTCTTTGACAGAGCTGGGGTGTTAAGTGAGAAGGCACAG-TGAGGGGTCAGGA-GGAGTCACCTGATCCCGGCCACGGTTCACCCGATCTGTTAACAGTTCCACAGTGTTCTTTTCTTCATCTAACTCCGCTTCCAGCCGCGAGACTTTCTCCTGTGGCAGGAGAACAAAAGGTCAATTCTGTCTTTAATTCTGCACCCTAGAATGGCAAACCCAGACCAAAGCCTCATCAAAACTTCAGC-CCCACAGACTCTTCTCGCTGGTACTTTCCAGAACCCTTCTGGTCCTTGCTCCAGCTTGCTCAGTGCTGCCATGGAGCCAGCGCCCTCTGCTGACC--------------------------------------AGGAAGGCAAACCCTAGAAGCTATTTCTTCTGGGAGAA-CTATCTCCCTAATGGAAAACCTCAA
s HiC_scaffold_1 139697849 650 - 233722169 GAAGAAATCACAGGATGCTCAAAATGAAGGAGCCACAGAATTGACACAGGTTC-----ATTCTCCCACCAGGAACCAGCATCCCTTCTATACCAAAGCAGTTCCTACTCAAGACACAGTGGCTCAAGCTACAATG--CCTTTATTCAAA------TTCTTGGCTTCTTTCCATCTGAGGAAACCTGCCAATCCTTTCCAAAGCAGA----------------------------CAAAACT--CCAGACTACTGA-----AGCAAACAACGTTGTTTTTGAGAAAGCCGAGAGGTTATGTGGTTCGGAGTAGATGAGTGGTAATGTTGAAGTTACCTGGTCCCGGCCACGATTCACCCGCTCTGTTAGCAGCTCTACTGTGTTCTTTTCTTCATCTAACTCGGTTTCCAGCCGAGAGACCTTTTCCTATGGCAGAGGGACAGA----CAATGCAG-CCTAAATGCTGGACACTGGAATGCCAAATTCTAAACAGGACC-CACTCAAACTCCAGCATCCATAGACCTTTCTCTCTTGTAC-CTCCAGGATTCTTTTGGTCCTTGTCCTGGCT--CCCA--GCTACCAAGGAGCTGGCGCCCTCTGCTGATCATGTGTGGCATGGGGAGAAGGTTGTGTTTGGGGGCAGGAGGAAGTCAAACCCC---AGCAATTTCTAACCAGAGAAGCCATTTCCTTAATAGGAAAACCCAA

a score=14954
s chr3            94665887 360 + 160039680 AGAGAAAGGCTTGGAATAAATTGGCTCCTTTCCCCACTTCAGTCTCACCTGTGCCAGAGCCC-------------TTTGTCCCTACCTAACCTGTCCAGCGGCTTTACCTCTAGGCTCTTCAGCTGTCGAGCCTTGTCGTCCTGGAAGCGTTTCTTGCTCTCAGCCTCTTGCTCTAGCCCCTGCAGTAGCTGGGCCAGCAGCTCTTTGTCCAGCCTGGCTGTGTCCCGCTCAGCCTGGGATGTCTGCAGGGCTTGCCGCAGCCTTTGCAGCTGGACCCAAAGATAACACACAACAGCTCAGCCTAATTGAAATATGGGGGATGGGTGTGCTCTGCCCGAggggagaaatacttcactactgacacactttaga
s HiC_scaffold_1 139699988 345 - 233722169 agaaagatacttGGGAGTCCCCTGTCCCTTTCCCCACAGAAGGCCTGCCTGTGTCAGGACCCAGGACCCTGTCTTTCGGCCTCCACCTCATATGTCCTG-------ACCTCAAGGCTCTTCAGTTGCCTGGTCTTGTCATCCTGAGAGCGCTTCTTGTTCTCTGCCTCGTGTTCCAGTCCCTGTAGTCGCTGGGCCAGCAGCTCTTTGTCCAGTCTGGCCGTGTCTCGCTCAGCCTGGGTGGCCTGCAGGGCCTGCCGCAGCCTCTGGATCTG---CCAGAGGTAA-AAGGGTGAGCTCAG------TGCAGTGTGAGG--TGG---------GCTTGAGGGGAAAAATACTTCATCACTTACAACCTTTAGA

a score=23185
s chr3            94667059 624 + 160039680 AGAAGGCAAAGACTTTCAAAGCCATGGACAGG--------------CTCCTGTTGTCTACGTTCCTACCTCATCCTGCAGCCAGCTCAGCCCCCCTGAATTCTTTTCAGCCTCACTGGCCCAATCCTTGGCCTGACGCTTGGCATCGGCTACTTCCTTCCGGGCCTTTTCCTTGTAATCTTCCATCTGAGCCTGGAGCTGCTGCAGGGCTAGCTTGGAGTCATCCCCAATCTGCTCCAGCTAAAACGCAGAGGAAAAAGGTTTCTGTCAGCACTGCACCTCTGTAACAAATGTTCAGTCCCTTCTCTAGACCCAGCTTCCAAGAGTCTCCCAAGAGCTTCCATTCTGCC-AAGCAGCTCTCTCTAGCTTGCCTGGTCTAGATCCCTGGAATGGCTAATCGTTATAT------------ATTCAAATTCTGG-------ACGTTGGAGTTTTAGC--CC---------ttacttatcatctctgatctcatttttctgtctataaaatgagataataacagcacctacattgctgagttgatactgaattatgttaatgatttaaaatacctataa-agtagctgatactaagtaaatcttcaatgaCCACATTTCTGCAAACTCAA----------GTTATAAGATATACTACTAAGATAAAAATCTGCCGACTAAACTA
s HiC_scaffold_1 139701028 652 - 233722169 AGGAGG-AAAGATCTTCAAACCCAAAGACAGGGGATGGGTCCCACCTTTTTGCCCTTAAGGCTCCTACCTCATCCTGAAGGCGGCTCAGCCCTCCAGAGGTCTTCTCAGCCTCACTGGCCCAATCTTTAGCCTGGCGCTGAGCATCTGCTACCTCCCGCCGGGATTTTTCCTTATAATCTTCCAGCTGAGTCTGGAGCTGCTGCAGGGCTTGCTTGGAGTCATTCCCAATCTGCTCCAGCTAAAGCACACACCAAAGAGTTT----TCAATATTACTTGTGTTCAACTGAAGACTA-TCCCTTCTCTAGATCCAGCTCCAGAGACTCTCCCAAGGGCCTTCCTGCAGCCAAAGCAACTTGCTCTTGTT---CTTGTTT----------AACAGCTGGTGGTTATATGCAGAtacctgggttcaaattctggcTCTATCACTT---AGTTTTGGTGACCAAAGGCAAGCTGCTCATCCTTTCAG-TCTCAGTTCCCCATCCATAACTTGGGGTAACAACAGTACCAACACTGC-AAGCTG-TTTTGAGAATTGTTAGTTATTCACATAAAGTACAACAGTGCCTGCTACAAAGTAAATCTTCAACAACCATATTTCAACAAACACAAGGTGCCAGTGGTTACATGATACACTA-TAAG--AAGAATGTGCTGACTAAACTA

a score=61074
s chr3            94668983 1724 + 160039680 aaaagcaaacaaacaaGATAACAGTAATAGTAAAGTTTAAAACTTTTTTAAAAAAGAAAAATTTGGTCCAATCCTATC--------------TGAGAAAAAGTAGTGCC-ATACATCCTGACCCACCTCCAGGGTTAGCTTCTGTAGGGCTCGCACCCCTTCCTAAGGGGCCACACTACCCATATTCACCTCTTTGTTGAGTCGGTCTACAGTCCTGTTCAGCAAACGCTTCTGCTCCTCCAACTCTGCCTTGCTCCTCCGGAGAGCCTCCCGCTGCTTCCTCTCTTCCTCTAGGGCCCGGTTCAGTGCTTGCTGTTCCTGCCCAAGGCGTGCCAGCCCCCGCTGGGCCTCATCTAGCCGGACCTCCAGAGCCCGCTTGGCTGCTGCCAGGTTCCCCTCCTCCTCCCGGGCAGCATTCAAAGCCTCTTCCAGCTGCTGTTTCTCTACCTGGGAGGCGGGAGAG---GAGGAAGGCTGGGCTGAGAGAAAGGAAAACTCAGGCTGAAGCATTGGAGATAGGAAGATGGAAAAGGTAATgttgggtgtggtgacacacatctctagtcctagaacttgtgaggctgacacaggccgacctcactggtctgcatagtgagttccaggccaggagggattacatagtcagatcttgcctaaaaaaaaaaaaaAAAAAAAGTGGACATCCAAACCGGCTCAGAAATCAAAGCACTGAA--CAAGCAAAGG---GTGGGAGACAACAATACCAGCGCAGAGTTTGAAACATTCACACCAAATCAG--TTCAGAAAACAAACCTAAGCTTAATAGATACATACGGTGAGGGAAAAGGGCAGTGCACATTGGCAGTAAAACTGATGGCCACATACCGAGATGGGAGCACAGCACATGGGGGCGTTCTAAGCTGAGTACCGAGGGGTGGCAGTGCATGAGGGCACACAACTGAGAAAGGAGGAGGGCAGGAGAGCGGGGAGACCCCACGGTGGACAAGAGTGTT-ACCTCCAGCCGATGCAATTTGTCCCGAAGCCATGCCTCCACCGCTTCCCCACCTTCCGCCAGACCTCGGGCCTCCTTCAACTGCTGCTCCAGACCCAGGATGCGCCTTCGGAATTTGTCATTTTCCTCTTGAGTCTCCCGACGTGTGGTTTCCACGGTTGCCCGACGCTGCCCCAGCACCATGGCCTCTGTCTCTGATGCCACTTTAGCCTGCGGGCAGTTGGGAGAATCGGCTCAGACCGAGGGGCTCA---TATGGGT----AAGCATTTACA---CCCAGGAAAAAGGGGTACCCGAGAACCCACTAAAAGCTCACAGGAGCTAGGGATAGAGGGGTAGCCTTAGCCAGGAACCTTCCTGACAATCTTACCCCT---ACACAGATCCAGCCACC-----CTGCCAAATTCTGCTATTCCCCACACACAGGAGCCTCCAGAGCTCCTCAGTACATACCCAGGATAGGTTAAGTTTGCAGGACCTCTGGCTTCTCAGCCCTCCTGACCCCTCAGCCTCCACCTCCTGAGCCCTGGGCCCACTCCCCTTGCCTTGGAAGCCTCTTCACAGTCCTGACGCAGTTGCTGCAGGGTCTTTTGTAGCTGGAGGTTCTGCTGCTCCAGCTCTCGGCCTCGATCAGCCTCCTCCCTCAGCGCTGCCAGCTGCTTCTCTAACACCTGGTTCCGGTGTCGTCCAGTCACCTCCTGGTTCTGCTGCTCTGCCTGAAGCTCTTTAAGCTCCCCCTGGGTGCGTCGAAGCTCCTAGAAAGGaa
s HiC_scaffold_1 139702110 1564 - 233722169 AAGGGCAAGAACACAGAAAGAAGGTAA----GAAGTCCAGTACTTT--------GGAAAGATTTGGCCTTGTCCTCTCAACCATGTACTTGAGGAGAGAGACAAGCTCTGATGCATCCGG---CACCTCAATG---AGCT------------GAGCCTCTTCCTAAGGGCCCGGGACTACCATGCCTACCTCCTTGTTGAGTCGTTCCACAGTTTTGTCCAGCAAACGCTTCTGCTCCTCCAGCTCCACCTTGCTTCGCCGCAGCACCTCCCTCTGCTTCCCCTCCTCCTCGAGAGCCTGGTTCAGAGCCTGCTGCTCCTGCCCCAGGCGCACCAGGCCCCGCTGGGCCTCATCCAGCTTGATCTCTAGGGCCCTTTTGGCTGCTGCCaggctcccctcctcctcctgcgcTGCATTCAGTGCCTCTTCAAGTCGCTGTTTCTCTGCCTGGGAGAAAGGAGAGATGGGGAGGGGCTGAGCTGGCAAGAGGC----------TTGAGTCATTTGAG-------------------------------GGTG-----------------------------------CACAG-------------------ATAGCGGGG--------AGGAAAAAT---------AGGTATTTATGAAAAAAAGTGCAATGAAAATAGGCTCAGAGAAAGTAGCAAAGAGATCAAGACATAGAGACCCAGTAAAgacaaataagaaacaaaaatacccaTGCAAAGTT-GAAACATTCACAGCAAAGCACACTCCAGGGAATAAATGCAAGGTTAACAGA--------------GGACTTAACAGAGGACAAGGAAGGTGAAACAGAAG----CATACTAC--TGACAACATAAAACTTGGCAGCGTATCTAGCAAAGGG--AAGATCTGGCCAGGTTGGAAGGCA--------------GTGAAGGCCAGGAAAAAGG----ACCCT---GTGGGCAGAAGTACTGACCTCCAGCCGCTGCACCTTGTCCCGAAGTCTCGCCTCCACCGCTTCCCCGCCCTCCGCCAGCCCTCGGGCTTCCTTCAGCTGCTGCTCCAGACCCAGGATGCGTCGGCGGAAGCTGTCATTTTCCTCCTGGGTCTCCCGAAGTGTGGTTTCCACTGTTGCCCGACGCTGCCCCAGCACCAAGGCCTCCTTCTCGGCTGCCAGTTTGGCCTGCGGGCAGTGTGGAGCAGTGGCTCAGACCGCACAGCCTAGGTCACAGGCCACGAAGCACACACATACCCCAGAAGCTAGCCCT--CTGAGAGCCCACCCAGAGCTTCAGAGAGGTGGGAGTAGAGAAGTAGCCCTGGCT-----------TAAGAGTCTTGGCCCTTAGCCAGGGTTGCTATCACCACCTACTGGCAGATCTTGCTGTGGCC---ACACACAAACTCACAGAGCTGCT-GGTACGTACCCATCACAGGG-AACCTTCCATGCCCTCTGGCTCCTCAGCCCACTAGACCCCTTGGCCTCCACCTCCTAAGCCTTAGGCCCACTCCCCTTGCCTTGGAGGCCTCTTCACAGTCCAGTCTCAGCTGCTGCAGGGTCTTTTGTAGCTGGAGGTTCTGCTGTTCCAGCTCTAGGCTTCGATCAGCCTCCACCCTCAAGACTGCTAGCTGCTTCTCCAGCTCCCGGTCCCGGTGTCGCCCAGCTACCTCCTGGCTCTTCTGCTCTGCCTGCAGCTCCTTGAGCTCCTCTTGTGTCTGGCGCAGCTCCTAGGAGGAAA

a score=29337
s chr3            94692569 1808 + 160039680 AGTTCTTCAGCAAGCAATGATTTACTGAT--------GTATATTACAGCCACAGGCTTAACAACCTGAGCAGACACTTACTCTTCAAGCTAGAGGAC-CCACCCCAAGACAAGGAGTGCCCCTGAACATTTTCTG--TCGCCAC---CCAATTGGGGACAGTAGCATCTGTTGATTTCCTCTCTGACCCTGCATCCAGCCCCTCAGGGCAG--------CAGACTCTGTGGTGAGGGGGAGTTAGTTCACTTTCACCTCCTGGGGTTTCTGAGGGAAATTGGCAGTAATAGCAAACACTAGGCTTTCTCCCACTTCAAAGCTCAAGGCTCATAGTGGTTCTGGGGAAAGTGGGACCTAGGCTCACCCCTCAGCCTTG-GCTCTGTGGGCAGCTGCTGTGGAAAGGCCTGGGGGAGGGGTCTGGGTGATCAGAACTGTTTTTTGGAGCATGAATGTCTAGAAGAAGAGGACAATCATCAGAGAAAGCTGGCTTTCGATGCAGCAGTGGGAACAAACAGGTCCTCAACCGTGGGTACCCTGAAATGTCCATGGGCATGGCCAGACACATAAACGAGCATTTGAAGTCACAGGAACATGTGAATGCA------TACATATAAACACTCCTCT-CACACGGTTCCTG-----------------CTCACATGGGCACACACAGGCATATACACGTCCAGGCGGAAGCACATACAAATTCACA------------CCTGTGCATACACAAACATAAAGGCA--------CATGGATAGGAACCCAC------------------AGGAGAAGGCTACACAGGCACACA---------------AACTTAATACAGACCA---------AAGTACCCACTAATGG---------CTCAGATGTTTTT---TGCATGTGTATATACACGTACATATGTGCACACCTGTGCACAAGTGTGCGTGTGTGCACACACACAC--------------CCTGTAATTTGAACAGCCAGGCCACTTGACAGCTTCCTGGTTAGCTGCCCTTTATAGTTTACCCTGGAAGGCAGCCAGGTCCCTCCCCTTGCTCCACCTCT-CCCCCAATTAGATGCATAAATTCCCTCCTTTTGCCCCTTACCTGTGCAGTCTGCAC-------------TTAATACCAGCACTGGTCTCTGCTGAGCCTCTGCTCATTCCTGGCAAATCCTGCAGGACCCGAGTGTCAGCCAGCCAGCAGCATGGGTAAGGAAAAGGCTCTCAAACCA--------TGTGTAGGCTGCCTGTA-----GTTTGGAGGGTCCTCCTCCTTCCAGGAAATGACCCGGAACTG------TGAGGCAGACAGTGACGAAAGAGTTGGACTCTT----GTTCCTACCCTGCAGACATGCACATAGCAGCTCAAGTGAAAACTTCATGCACAC----TATTTTTCAGCCTGGCCTAAGTTCTAAGGAACAGAAAGGGACCGCCAGAAATGGTGGTTTGTGAATCCTACCCA----------------ACCTCGGTAGGG--------------------------GAAGGGGCA------------GGGGCAGTG------CAGCTTGTCACCCTCGTAAATATATGATTCTGGTTTTAGCACGGGGTCAATGGGTTGGGGGGGCGGGTGTTACAAAAGAACAATCATCACAGCCT----GGATCTCTCAAGCTGCTTCATATCACCAGTCA----ATGGGGGAAGTCAGG----------------------------------------------------------GGCAG-------------------------------------CCACACTAGCGCACTGAGGGCCTGATTCTGCGCCCCTCCCAAGTCCCACAGCCCTCTTATCCTTTTGCCTGCGAGCTCCTGGGTATCAGTCTG-AGAGTCTGGGTTTCAGAAGGAATGTTGAGGCCCTGCTCCCC----TTATTGCTGGCTCTTCCCTGGGCTAGTAGAAAGACCAGTGGCCATCCTGGCACAGAAAATCCACTTGAACTTTGCCTGGGTTC--CCCAAACTCAAAATG-TCATAGACCTTGCTTAAAATGCTTACGACTGGAGGATGCCAC---ACAGAGAAAGATGGTGCCCCA
s HiC_scaffold_1 140042594 2000 - 233722169 AGCTCTTCAGCAAGCGGTTGTCATCTGCCTGTCCTCAGGATGTTATATCAGCAGGCTCAGCAGCAAGGGCAGTTACTGACT--TGGAGCTGGAGGACTCCTCGCCAAGACAGATAAAGACAGTGAGGGTTTCCCGACTCACCACAGACCAGTTAGAAACAATGGCAGCTGTAGAGCTGC------------CACCCAGACTCAGAGGGCTGTTGAACACCAGGCTAGGAGATGAGGGGGAGGTGCTCCACTTTCACCTCCTGAGGTTTACAAGGGTAATATAGGGTAATAACAGGCTGCTGACTTTCTCCCACTTCAAAGCTCAAGG-GCTCAACTATTCTGGGAAAAGTAGACCCTGGCCCCAGCCCTCTGCCCTGCTCCTTGGGGGCAGTTGTGGCAGAAAGGCATGAGTGAGGAGTCCCAAACAGGAAGGCTGGCCTTTG---------------GGAGAAGAGGACAATCTTATCAGGGAGCTGAGTCTGGCTGT-----------------GGCTCATAGCC-CAGGTATTCC-AAATGGCAAGACACATATTCAAATGCATAGATGAGCCTTCGTAGGTACAGAAGCACGTGTGTGCACATGCTCACATGTATACACCTCTCCGCACATGCACActggcagacacacacacacacacacatacacacacacacacacagacaaatctaaacatagacacacatacatacacaaatactAACATGCAAGCATATACACAAGCAAAAATTTACGCACCGTCACGGATAGATATACACACACAGCCACAAATATAAAGGCACAGGCAACATATGAGTACACGGGAGCATGCACATACCCTGACACAGCTCACCACATAGGAGGCATCTACTAAAGGCACTAAACACGCACGTGTCTGTATATGcccaggtacacacacacacacacacacacgcatacgcACACGCACATGTACATGCTCAGGCATTCCTCCACCTCCCCCACCTCCAACTCAAACA-------------CCAGCCACCAGGCCAGCCGCC--TTGCAGCTCTCCCCAGGCTGCAGCCTGGTCCCTCCCCCTGCCCCGCCCCTGCACCCGATTGGCTGTATAAATTTCCTCCCTTTGCCCTTT-CCCGTGCAGCCTGCCCGACAGGAGTGCGGTTTCTTCTTGC-CTCGTCT-TGCCTCACCTCTGTCCACTCCTGGCCAACTCCTCTGGATCAAAGTGT--ACCTGCCAGCAGCATGGGTAAGCACAGGGGCTTCTGACAGCTGTGCACTGTCCAGTCCTCATGTGCTCTCATTTAGAGGGTCCCCTCC---CCAGGAAATGACTTAAAATTGGAGGATGGGGGCAGTTAGGCGAGGGAggactattctcttcatggtccCTTCCCTGCATGcgt-cacata----caca-----------cacgcacacctaGCATTTCCCAG--------AGGTT---GAGAGTGGGGAGGGACTGCTGGAAAGGGTAACTCTGGGTTCTTATCCAGCTCTTCCTATCAGAGGCCTGGGTAGGGAGTTTTTCTGGTAGCTGAGACAATTTGACAAGGCAGAACTCTTAGGGGGAGCCTTGATGTCCCTGCCTGTCACTGCTG-AAACAGACAATCCTGTTTTC--------------------------------CTCCAAGAGAGAGCAGACCGAAGCCTTCCATGCCCTCTCCAGCTGC-CCACACAGCCAGTCACTTCAGGAGGGAAGTCAGGGACCccactctctctttttttttgtactggggattgaactaccACTgcacgtttgcaaggcaggtgcttatgcctctgagctaaatccccagcctcaattcCACACTCTATTGCTAAGGACCTGTTTCAGTGGCCCCCTT--GTCCCCTAGCCCTTATGCTTCTCATTCTGTGGGCTCCTGGGTGTCAGGCTGAAGAGTCTGGAGGTTTGAA-------------CTTACTTCCTGGAGTTGATACTATAT----------CTGGCACAATGTCCAATCACCACCCTGGCATAGAAGAGCTATTTGAGCTCCCTCTGGGTTCGTCTCAAATGCAAGATGCTCAGCAGCCTTGCTTGAGATGCTTAAGCCAGGAGGGCACCCCCAGAAAGAGGAGCAAGGCTCCCCA

a score=50176
s chr3            94696407 1982 + 160039680 CCCCTGTggtgctctcattatctcttcttcacatacaaactggaaactgag---------ttagataatttgcccaagttctgcccaagactggccaggtaggctacggcaggaatcgaagtcagTGTTATGATTACTG-AGGACACAGGCTCTGCCTCACCTCCTCCAGTCCACTT---CCAGGTCATGTGG--------------CTCCACTCTTCCACCTCACCCTCATCAGAG----AtgggggactgggttgggggatgggttgggggtactgggCCAAAGTGATGGGGCTGAAGTAGGGACCTGGGGCAGC---AGTGAGTCTG--CCTTGCCTGCCAGA--TGTGTCACAGGCTGCATAAAGAGAGAATCACACTCCAAAGCAGGCCCCAGCCAACGTGTTCCCATTATTTCTACAGCTACAAAATGCACAAAGTGTGGTCCAGGTTACCCCACCCCTCTGGAGGCCATGAAAGGTAATTG---TAAATCGAAGGGCCGGCATCCCTCTGCAGACCCCAGGGTAGGGTTGGGGTACAGCAGATCTACCTTTAGCCCTCTGAT--------CCTTCCTGAGCTGCCTCTGCCTGGTGG---ATTACCACAACCTGCTTTCTACTTCCCAGGACCCCGAGAGGAGATTGTCTACTTGCCCTGCATTTACCGGAACACAGGCACCGAAGCCCCGGATTATTTGGCCACTGTGGATGTAGACCCTAAGTCTCCCCAGTATAGCCAGGTGAGGTGAAGCATGGTCACTAG--TGCCCCTGAGACTCCCACGACAGCCCCGG--------------TTCCCTACCTCTACCCT-TCTTTGTCCTC-------ACAGTAATGCAAGCTATTCATTG-------CACAGGGTGCT----GAACTGAAACCCTGTCTATGCCT-------AGTCAAAAATGAGTCTGTAGAGGCAGGACCTGGGCAATCAGCACTTCCTGTCCTC-CATCCTAGGTCATCCACAGGTTGCCCATGCCCTACCTGAAGGACGAGCTGCACCACTCAGGATGGAACACCTGCAGCAGCTGCTTTGGGGACAGCACGAAGTCACGCAACAAGCTGATACTGCCTGGTCTCATGTCCTCCCGCATCTACGTGGTGGATGTGGGCTCTGAGCCTCGTGCCCCGAAGTTGCACAAGGCATATCCTCCGTCCT--------TGTGACCCTATTG---------AACATGCTGGCC--CAACAACCCTTAGACTAGCTGTCTCCAGATTTGACACAGGGTCTGACTCAGCAGCAGGAAGGAAGGGCACACTTCAG--------------------------------------AGGGCTC-------CTGAACTGGCACCATCA----------------------------------------AGC--------AAGTTTCAAGCATGG------------------------------------------------------------GCTGGGA---------------------TGCCAG--------------------------------------------GAGAGGAGGTTTC---TTCTTTGAGCAGGGTGTCAGAGCCAGCT-----------------AGCTCAGGGCTTC-------------------------CTCTCAACAC--GTCATTGGATATCCATCCTCTGCACCAGATGCTCAGAGCTG-ACTGCTGAGGGTACAGAGCTAACAGTGGCCTCGGAGGGGCCCCAGGAGATGGGAGTGCCTTCAAGAGGGACAAGGGAATGTCA------ATGCTCTCTGACTGAAGACTTACTGGTGGTTTCTCTGCCTCTCTCTTGCTGGTC-TCCAAGTTACCAGACTGAATTTGTGCTGTCTTCACTCAGGGAG-----------------AGGAAAAGGAGGCAGGGCCCACAG---------GGAGAATGACAGCAGGTAGTGGAGACTTCTGGCTCTGTAAAGTTCTGACCCTGTTCCTTAC-CTTCTCCAGGTCATTGAAGCCAGTGAAATCCAAGCCAAGTGCAACGTGAGCAATACGCACACCAGCCACTGCCTGGCCAGTGGAGAAGTCATGGTCAACACCTTGGGGGATCTCCAGGGTAATGGCAAAGGTACCTGCTGGCACTGTGGACTTGTAAAATCTCAGCAGCTAAGAAGTGTGGAAGGCATCCCACTGTGTGGGGAACAGAACCAAAGCCTGGGGAGCAATAGAGTGAGACACCAGGGGGAACTGGCTGAGTCCTATCCAACATCTAACATGTCAGCGAGTGGCATCAGTTGTTTCAGTTATTACTACAGTGATGAG--------GATGGGTCTGGTCATGGGGtataaattcagct
s HiC_scaffold_1 140046174 2323 - 233722169 CCCTGGTGGTGTTCTTATTCTCCCTCTTTTACAGACAAG-TGGAAATGGAGGCCTGGGGGTTACACAATCAGTCCAAGT---GCCCACAGTTGGTCCATGGTACAGAGGCTGAGAGTTAAATCGATGTCATAACTACTACAACACGCAGCCTCTGCTTCACTTGCCCTAACCCCTCTACCCTGGGTCCTGCTAGGGGGTCTTTCCCCTTCAGGTCTTCCCATCAACCCTGTACACAGTGCTCTGAGGGACC---TCAGAGAATAG----------------CCCAgcagtggggctggggcagggcccTGGGACAGTCCAAGCTGGCCAGGCACGTGTCAGCCAGGAGTATGTCACAGG-----TGGAGAGGGA-CCTCTGCCCTCAGTGAGCTCCAGCCAACGTGCCTTC-TTATTTCCACAGCTACGAAGTGTA---ACTGTGGCCCTGGCTACCCTACTCCTCGGGAGGCCATGAAAGGTAACTGCCCTGTGTTCAAGAACTG---TGCCCCT-CAAATCCATGGCTAGTG--GGGGTAGAGA--------CCTCAGCCCTCTGACATACCAGGCCTGCCTTCACCATTCCTGCCCACCCCGCCATCCCCACTGCCTGCTTTCTACCCAACAGGACCGCGGGAGCAGATTATCTACCTGCCCTGCATTTACCGAAACACAGGCATTGAAGCCCCAGATTATCTGGCCACTGTGGACGTTGACCCCAAGTCTCCACAGTATTGCCAGGTGAGGCCAGGCGTGGGCACTGGCATACCCTTCAGACTCCTCC--CTGCCCTGGCTTctgtgcttcttttctctaattccatCCTCTTTTTGTCTTCCCTGGATATGGCTGTGCAAATGATTCACTGATCGTCCCGCAGGATGAAAGAAGGGCTGAAATCTAGGTTGTGTCTCAATAGCAAACTAAAATG----CACAGAGGCACGGCCTAGGCAAGCACCACAACTTCTCCTTTCATACTAGGTCATCCACCGGCTGCCCATGCCCTACCTGAAGGATGAGCTGCATCACTCAGGATGGAATACCTGCAGCAGCTGCTTCGGGGACAGCACCAAGTCACGCACCAAGCTGATGCTGCCCTGTCTTATTTCCTCTCGCATCTACGTGGTAGACGTGGGCTCTCAGCCCCGTGCCCCAAAGCTGCACAAAGCACGTATTCTGCCTCACCAGCAGGGAGACTATACTGTACCCCAAAAACCTGTAGGCAGGAAGCTGCCCCTAAACT-GCTGCCTCCACCTGTG---CAGGATGCAACTCCGCAGCAGGGAGGGAGGTCAGAATTTAGAAAAGGATCACCAGCCAGATGTGCATACCTCTagtcccagcgctctgggaggctgaagcaggaagatcacaagtttgggtCCAGGCTAGGGAACTCAGTGCTtcgtgagagcttgtctcaaaattttaaaaatagtaattttttaaagggcCGTGGATGTAACTCAATACAAAGGCCCTGCGTTCGATCCTCAGTgctggggaaagaaaaaaaaaaacagggttaCCAGGCATGCTGAGCTTTCACCATGCAGTACGTTGGCccaggggaggagggaagaggcttCCGGTCTTTCTCAGAGAGTGTAAGGACCAATTTCCCCCACCCATCTATGTACTAAGGGCTTCACTGAAGCACAACCTACAATCTTTTCTCCCTACACTTGTCTCTGTA---CCAT-CTTGGTACCAGACATCTGTGGTGGTGCTGCTGGTGATACAAAGCTGACACTGGCATGGGGCCTACCCTATAAGACCTT-GTGCCTTCAGGATAGAGTGTGAGGTGGCAGAGGGGGTGCTTTCGGG--GGGGGGGTGTTGGCAgtgtctttcattttcctttgctgcttatagAAGCTCCCAGACTGAGTCTTTGCCATATTCCTGCAGAGAGTTGTAACCATGTATGGAAGGCAAAGGGGACAAGGGCAGCATATACAATACGGAGTATAGAGGCAGGCAGTGGGGACCCTCAGCACTGTAAAGTTCTGACCTTGTTCTTCACTCCTCTCCAGGTCATCGAGCCCCAGGAGGTCTATAACAAGTGCAACTTGGGCAACCTCCACACCAGCCACTGCCTGGCCAGTGGGGAAGTGATGATCAGCTCCCTGGGAGACCCCAAGGGCAATGCCAAAGGTACCTGCTAGCACTAGTTGCTCACAAAA---CTACAACTGTGGAACCTGGGCAGAATATCTCTGTG-AGCAAGCAGGTCC-AAGTTTGAAAAG-AGGAGAATGCCGAGCCAGAGGAA-----------TGCAGCCAGTATTTGAAGCGTTAGCAAGTAGCTTCAGTTCTTTCAATTATTCCTATGAAGATAAGCCTTAACTAATGAATTTAGTTAAAAGGTAGAGAGCCagct

a score=29876
s chr3            94699258 904 + 160039680 CAACAAAGCTTAGACTCTGAGAAGAACCCACAGTGGTTGTGATAGGTTGGGCAGGTGATACTTACAGGGTTCAGT-----CCCAGAGCTCTCTGTTCAGAGGGAGAACATTTTCCC-AAGCGCTCTAAGAGAAGGGTGAAGCTGCTAGAAGAGTACAGAGTAAGGGCCTCCCTGACTCCTGCCATCTCTAAAATGGATGTTCCCACACCTGACCTT-----------CAGCCCGGT--GGGAAAGAGAGATGG-------CCCACC-------------------------ACTTCTACATAAGCCCCTT-----TTCCCTGCTCAGGGAGTTTTGTGCTGCTGGATGGGGAGACCTTCGAGGTGAAAGGGACATGGGAGAAGCCTGGGGGTGCATCTCCAATGGGCTACGACTTCTGGTACCAGCCTCGACACAATGTCATGGTCAGCACTGAATGGGCAGCTCCCAATGTCTTCAAAGATGGCTTCAACCCGGCTCATGTGGAGGCTGGTGAGAATCACCCTAAGGGCAGGCAGGGGCCTTAGTCCACAGCCCCTGCTTTCAGCTCTCTACCCTACAGCAGATCTGCACTTGTCTTGCTTAGGATGCTCAGATCTGCTCAGGAGTCCTCTGTGCCCATTCCAGCTCCCCATCCT--AGCTGGCACTCTG---CCCCGGCCCATGCCCTCCCACCCTGACCTGAGCCCAGCCTCTGGTCCCTGTCCCCTCCCTGCTCAGGGCTGTATGGGAGCCGCATATTTGTGTGGGACTGGCAGCGCCATGAGATTATCCAGACCCTGCAAATGACAGATGGGCTGATACCCCTGGAGATCCGTTTCCTGCACGACCCAAGTGCCACCCAGGGTTTTGTAGGCTGTGCCCTCAGCTCCAACATCCAGCGCTTCTACAAGAATGAGGTAACTTTGATCC-CTGCCTTCCACCCCATCCCCAACACTCAGCTAT
s HiC_scaffold_1 140048674 916 - 233722169 CAGTGGAGCTTAGACTTAGAAGAAACCCCACTCTCATCATGGGAA-CTGAACAAGCGAAAC----AGGGGTTACTAAATCTCCAAAAATCTCTTACTGCAAAGAGAAAATTTTCCCTAAG---TTTGAGAGAAAGGTAAG-----TAGGAG--------------GCCTATCTCTCCCCAATCATTCCTAGGAAGGACCTTTTGAATCATTAAATTTAAGGAGCTGGCAGCCCTGTAGGGGGACAAGCAATGGGTTTACATCTACCTGATGTAAATGCTGGGTTCAGTAGTGTCTCCACCTGAcaccctccttcctttcctgctcagGTGGTTTTGTGCTGCTGGATGGGGAGACTTTTCAGGTGAAGGGGAATTGGGAGCAACCTGGGGGTGCTGCACCCATGGGCTATGACTTCTGGTACCAGCCTCGACACAATGTCATGATCAGCACTGAATGGGCAGCTCCCAATGTCTTCAAAGATGGTTTCAACCCTGCTCATGTGAAGGAAGGTAAGAATC-CCCTATGTGTGCTTTCTGCCCCAAATTCACTTCCTCTAGTGGTCCCTAGATACTCTGGGTTA---TGGTACAGGACGTGCTGAG--TGCTCAAGCTTGTGCAAGCATCCCTTCTGCCCTAGCCAAGGCCCCAGCATACACCCAGCACCCAGCAACCCCAGCCCCTAC-------CCCCAATCTGAGCCA----------CCCTCCACCCACCCTACTCAGGCCTGTATGGGAGCCACTTACACATATGGGACTGGCAGCGCCATGAGCTCATACAGACCCTGCCTTTGAAGGACGGACTCATTCCTCTGGAGATCCGCTTCCTGCATGACCCAGATGCCACGGAGGGCTTTGTGGGCTGTGCCCTCAGCTCCAACATCCAGCATTTCTATAGAAACAAGGTAACCTGCACCCTCCAGCCTCACCctcacccctgcatcccagctgt

a score=20603
s chr3            94702294 426 + 160039680 ACGTTCTCTCCCTTCCCCAATGTAGGAAGGCACTTGGTCAGTGGAGAAGGTGATCCAAGTGCCCTCCAAGAAAGTGAAGGGCTGGATGTTGCCAGAAATGCCTGGTGAGTGCCCactggagagggca--------ggttgattcctggcttgggaagagagatagactccttacagcccctcaatcctgcttaggtttgatcaccgacaTCCTGCTGTCCCTGGATGACCGCTTCCTTTACTTCAGCAACTGGCTGCATGGGGACATTCGGCAGTATGACATCTCTAACCCACAGAAGCCCCGCCTCACTGGGCAGGTAGAGGCACTAGCAAA-----------------------AGCTGCTTGGGGCTG---ATAAGG--------------GAGAAGCAGGAGACGCAAAACTGTGGGC-----AAAGGAACAGGCCCAGGACTGAAG-AGCCATGACTGAACACAGGGACTGTGTC
s HiC_scaffold_1 140049822 468 - 233722169 ACTTACCCTCTGCTCCCTGGTGTAGGAAGGTAGCTGGTCAGTGGAGAAAGTGATCCAGGTGCCCCCCAAGAAAGTAAAGGGCTGGATGCTACCTGAAATGCCAGGTGAGTACTAAGAGGAGGATGCAAATTGGGAGGTTGATTCCTGGCCTGGGAACCAAG-------CCT--CTGCACCTGTATGC--CCTAGGCTTGATCACTGATATCCTGCTGTCCCTGGATGACCGCTTCCTGTACTTCAGCAACTGGCTGCATGGGGACGTGCGGCAGTATGACATCTCTGACCCACAGAGGCCCCGCCTCACCGGCCAGGTGGGTGTCCtagaaaaataaggagaaagagTAAAAGGAGAGCACTGTGGAGATAGGTAGAAGGTGTAAAGTGGCCGTGAGGAGCAGGAAGAGCAAAACCATGGGCTACAGGATGGTGTAGGGTCAGGCCTGGGGAAGCCATGGCTGGACACAGGAA-TGTGTC

a score=38825
s chr3            94703449 1106 + 160039680 ACCTTTGTCCCCCTTTCCCTCTGAACCCTGTTTCCAGATCTTCCTTGGGGGCAGCATTGTTAGAGGAGGCTCTGTGCAAGTGCTGGAGGACCAAGAGTTAACCTGTCAGCCGGAGCCCCTAGTGGTCAAGGTGAGAACTTCTCCCTGCTCCCTCTAGTC-----------ATGCTC-----------------GAGAGTATCTTCTTGGA---TGCTTTGGG-ATCCAGCTGGTATGCCAAGTGGGCACCAGTTGCTTAGGCCATTTGGGGGTTAC--TTGGAGTCTGACCTCTTGTTTCCTCAAGGGAAAACGAATTCCTGGAGGCCCTCAGATGATCCAGCTCAGCTTAGATGGCAAGCGTCTTTACGCCACTACATCACTGTACAGCGACTGGGACAAGCAGTTTTACCCTGACCTCATTAGGTGAGAAGCAGTGTGGGGGCTCATTTCTCCAACTGTCCTCTCCCACAAGCATCACTTGGCCTTCCGAAGACTCATCAGGAACTCCAACTGTACCCCACCATACAGATGGCCCAC--GGACCCTGTCCCATCCCCAGGAACCAA---CTATACTCACAAAATCTTGGGGTATGGGGTTGGCTACATACAACTTCTAGCTTACCTCTTC--TTCTCTTCTAGGGAAGGCTCCGTGATGCTTCAAGTTGATGTAGACACAGTAAATGGAGGGCTGAAGTTGAACCCCAACTTTCTGGTGGACTTTGGGAAGGAGCCCCTTGGGCCAGCACTGGCTCACGAGCTTCGTTACCCAGGGGGTGACTGCAGTTCTGATATCTGGATCTGAAGGCTCACACTAGGGGCCCCCCTCCACATTCTGAGCCT------------GCCTGGCTTCACTCTGCT----------CTCAGCC---------CCAACTCTCCAAGGCCACTCTGAGACCAGCGAGATCTGTAGAGCAGCATCTCTGT---------ACCGTTGCTTGTTGTT---TGTACTT-TTCTTAAGTGAGCTCCTGGAAGCACCTGGAAATAAAATGCTGAAACTTCTCTCAGATCACTCTGTGATGGAGGGGGAGTGGGT---TGGGTCCTCTGCCATGGCCAGTTTCTTGTGTAGAGAAGCCCTGAAGGGGGTTGTGGTGACTAGT----GTATGCAAGTGATTCCAACATGAGGCCAATGCTGTCAAACATTTCTGTTCT
s HiC_scaffold_1 140050353 1158 - 233722169 ATTTCTGTCCTCtacacctcctcctcctcccctccagatcTTCCTGGGTGGCAGCATTGTCAAGGACGGACTGGTGCAAGTGCTGGAGGACCAGGAGCTGAACTGCCAGCCAGATCCCCTGGTGATCAAGGTGATGCCCCCTTCCTGTCCTCTCAGGCCCCCTCAGATGCAGGCTCAAGGGGTGAAAGGATAAGGGAGCATAGCATAGGAACATGCTTTTGGTATCTGGGTGGT--GCCTA---------------TAATCCCCTCCTAGGATTACCTTTGGGGTCTGATACCCACTTTCTTCAAGGGAAAAAGGGTGGCTGGAGGGCCTCAGATGATCCAGCTTAGCCTTGATGGGAAGCGTCTCTATGTTACCACATCACTGTACAGTGCCTGGGACAAGCAGTTTTACCCTGATCTCATCAGGTAAGCAG-ACTCCCTGGGCTCACCTCTCCCACCTCCTTCTCCCTGAGGGATTACATAGCTATCTGAAGACTCCTGGGAAACTCCACCTGCACCCAAACCTACAGATGGTCCACTCAGACCCTGCTCCTTCCTCAGGAACCCATCCCCACATTCACAAATCTCAGGAGT----GGGTGACCTCTTCTGATCTTTCCCTCATCCTGTCCCTTTTCTACCAGGGAAGGTTCAGTGATCCTGCAGGTCGATGTTGACACAGAGAAGGGAGGGCTGAAGTTGAACCCCAACTTCCTGGTGGACTTTGGGAAGGAGCCCCTTGGCCCAGCCCTAGCCCACGAGATGCGCTATCCAGGAGGTGACTGCACCTCTGATATCTGGATCTGAAGTCCACCACTCAGAA-CCAGCTCCACGCCCTGAGCCCTTCCTTTCCAGGGCCTAGCTTCACTCTGCTTTCTCCTGGCTTCAGCCCATGGCAGTCTGTCTTGCTAAAGCCAA-CTTACAACAATGAAACAAACTGAGTggcatttccttttcttgtccaCTGTTGCTTGTAGCTTACTGTGCTGATTTTTATACAAGTTCTTGAAAGCACCAAGAAATAAACTAGTAAACCTATTCTCAGATCACTT--------GGGGGAGGTGGGTATGTGACTCCCTTCTCCTGATTAGAAGACT-----GAGGATTCC---AGGGTATTAACATGACTAGTAATAACTAGCCAGTAACTTCTACATGATACTAATGATACCAAAGTCtcatattct

a score=43993
s chr3            94720009 2991 + 160039680 CCCTGTTACCTACCTCAGGTGGGCTACTGTAGAGAGTCATGGGACTCTGACTAAAGCCATTTGGCTTTTCTAGTACCACCTGT-TAAAAGAAAATAAAATCAGGAGTTAAAAACAATTTAACCAAGCAAAGAATTTTGAAGCATTATATTTCTAAGACGTCAAATGGTACAAAccagcgagatggcccagaggcacttgccaccaaatctgacaatctgagttcaatccccagaactcccacaagttgtcccttgacatccacatgtgtgttgtggcataagtgcatgcacatacacaTTTACATGTGTGCTGGCTCACATGCAAAATAAAGGTGAAAACATTTTTTAATCTTATaggga------------aagagagagggggggaaa---aggagggaagaagtg------ggaagcaggaaaagggtggaatggagacaaacagaagagaggagaggagcaaggga----------gggagACAGA--TTTCCACTGCTCCACGAGAAAACAGAAAGTAGAGGGTCGGAAAATGGCCTTGAGGGAA----CTATAACCT-GTGGGGTGGACGAAACAGACCTCAGGCTAATGCCTGCAGTGGACTGGAAACCGTGTGAGACTCGTCCCTCCCAGGAGTACAAGCTGCTGCCTGCCATAAACACTGCGCTCTCTGTG---GTGGGGATCCTGACAGGTTTTGACCAAGCATCCATCAAAAAGAAA----GCTTTTGCTATGATC-CTATCTAACCCAAAGCCAGACTGCTCACCACACGACGACTGCTATCTGTGCCAACAAGAGGCCTGGGCTTTGTGGCCTGACTCTGCACACAATACTCT----GGTGCCTCTCACCAGACAGGTGTGACAACTGCCTCTGCA-GTGCTGCTT-CAGCTAAGGCAAAGTAAAGGTGGAAACAGTCACAACAGGAAACCCAGT-------CAAGACAACAAGGAACCCACCCTGCACCAGCTACTAGGCCACTGTTCCCTTCCCGACA--------GGGAGGAGGCTTCTGGAGAAAGGCCATCTGACTCAAACCAAAAGGCAAACAAAGGAGACAGAAGTCTGATCTCAGGA--GCCCAAGTGAGAGGTCGACAAGGCATTCCCTACTTCTGAGAACACTCCTTTCCTGGAACTTTGAAACAGCTAGAATCCCACAC--TAG------CCTCTCAGATTAGATTTATACA--CTGTT-TGTCCCTCCACTGTTGATGC-TTCCACATCCTACATCCTAGGCCAGGC-TAGGGACACAGGGGAAGAATGGTGAACCCCTAAGGAGTCCAGGGCT------GAGGCAGGACTGGATCAAGATTTCCACTTTTGGACTGAGGAGGtggccacacttgcagaggacctgactttggttcccagcacccatatgcagcacataaccatctctaa-----tgtcagttccaggaacctaacactcttt-----tggcctcctgggacactaggcacatgcatggtatgcaaacaagggcaaggaaacgttcatacatataaaatgaaaataaTAAATCTTagctgggtatggtggtgtccatctctaatcccagcatttgaaaggcagaggctagtggatcgctttgtgttagaagccatcatggtttacatagtaagttctaggatagctagggctacacagaaagaccttatct---------------------------------caaTGgagagagagatgg---ggaaagagagagagagagggag--------agaTTGA-------------------------TTGAGAGATGAAATTAACACAGACAAAAATC----------------------TTTATTAAAAAAAAAGACTTCCATTTT-------ACTTAGGTTCACCCAAGTTCAGCAAGATCAACTTATAAGAAGTTTGCATCCATAGTTG---------ACTGTCT------------------ATGACTATGTACTGGGAACACAA-----------ACTCTGATAATTTTCAGGAAACCAGATCC--CTGATACACTCTCCCTTCCTGACCATGTCTTGAGAGTCAGCGCCATTCCAACGTACCTGTATCTCCTGCTGACGCAGAGGGTCTCCTGGACTCCTGTCAAGCTTGCTACTGATATCCTCCCGGAGCTTCTGCAGGCAGTTCCTGGCCTGGGGAAGAAGG-----CCTGGCACTTGAGATTCAGGGTAGGGAAAGGAAACACCTTTGGGTCACTTCCCCAACCCATATTATTCTCAGTCTGGCATGGTTCTAACAG--TGGCTGCAGACAGAGGAATTGTGTTCAATGGGGCTGACAACCCAACCTCTCTtgtacaaa---ccagatatattaatcgcctcctctggcagtgctgacatgctagttgagaagacatgggacacaaaagacaaataag----atgtgcactacagaatccagtagtaagtgctaagaagccaggcaggggc---agggaaagactggggaaggtgagATTACAACCAAACA--GATGACAGAGTGGGTTGATTAATAGATGAGATTGAAAAGGTCAAAAATGTTTTG-TGACAGCGTCT----------TTcagatc-------tctttaagtt-------------caaggccaacccagtcggcatagagttcca-ggacagtcatggcttcacagagagatcc--------------agtctcaaaaaaccaaGTA--------ACAAGTAAAAATGT--------------ATAAATAAATA---------TAAT----TTGATGCACAGGA--GAGCATAGG----Ggccggggggtggtggtgcacggctctaatcccagcacttgggaggcagaggcaggcagatctc---tgagtttgaggcctgcctggactacaaagtgagttccaggacagccagggctacacagagaaaccctgtctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGCATAGCATG-----GGGGAACTTAAGTGACATAAAAGGAACAGAAGGGAAAACCATCAGAACCCATAAAAAAAGGTAGCTCTGAAAATCTAAGGTTCAGGACATGTAGGTATTCCGTCCAAGGAAAGGGGTCCGCACCTCCTGGATGTACTGGACCTCACTCTTCAGCTGGTCGATGTTCTTCTCATGGGTCATCTTGTCCCCAGACCTCCCTTTCAAGTACACCTG------------CACTGTTTAGTTAAG--------------------------AAACACATAGCCCCATACTCAGGAGGAAGGAACACACCAGGT-------GACTATCTGGTGATTCAGCTTAGCAGAGTTAAAAAT
s HiC_scaffold_1 139669866 3036 - 233722169 CCCCATTACCTACCTCAGGTGGCCTGCTGTGCAGGGTCACAGCACCCTCACTAAAGCCATTGGGCTTTTCGAGCACCACCtatgcacagaaaaacaaaagtgacaGTTGAGA-CAATCTAACTAAGCAA----------------------CCAAGC--------------AACCAACG-----------------------CCAAAACTG----------TTATATTCTTAAGACTTCTAC--------------------------TCTtagagcaaaagagaaag---------------------------------ggagaagagggaaggaaacaTG----AAGGTTAAAAGGAGATTAGAggcagaagggagggaagaggaaaggaaggagggaaggaatgtAAACAGGGagtgaagagagggaagaaggaagaagagttaaaggaaagaagggagaaagggaaagaggaaaagggagacagAGATTTCCAGTGCTCCACGGGAAG---GAAGCCAGAAGGGGAGGAATTGGCCCAGAAAGGTGATTCTCTAACCTTGCGAGGAGAGACAAAGAGATCTCAGACCAAAACTTTCAGCAGATTGGAAAATACGTGAGGCCCATTCCTCCTAGGAAAACAAGCAGCTGCCTGCCA--------GTGTTTCTCTTGCCTATGAGGATCCTGACAAGGTTTGAC-AAGCATAAATCAAAAGGGGAAGCAGCTTTTGCTATAATTATTTTCCAACTCAGAGTCTGATCAGTCATTCTATGAC------CTTCTGTGCAAACAAGGGGCC----------GGCTGGTCTC------CAGTACCTGAGGAGGCACCTCCCAGGAGCCAGAGAAGAGAACAAACACCGCATGTCTTGCCTGCAGCCAAAGTGAAATCAATCAGGGAA----------AGAAAGGCCACTGTGCATGCTTGCCAGAGAGAGGTGCTTCCTG-ACCCCCTGGTAGGCCACAGCTCCCTCCTGCACACTGAATGGGGACAAGGGCTGCTAGAGAAGGACCAGCCTGCCCACATCAAAATACAAGGGAAGCAGACACAGCTCTGAGTATGAGAAGGATCCACTGACTGACCAAGAGTCAACTCCACTCTACTGAGGACGCTGTCATCCTCGAAATCTGGAAAAGCTAAAAAGCAAGATGGTAGATTATCCTTTTCAGTTAAGATTTATCCAGTCTGTTATTTCTCACATTTACTGATGCCTTCTGTATCTCATACCCTGGGCCAGGCATAGGGATACAAAGACAAAGTGATGAACCT----GTAGTTCATGGATTTTCTCAACTCAAGAGTAAAGACAGCTACACACAATGAACCACAGGTGAGGACTAAGCCTTCAG------TTACATTAGTAGGTGTCACCCAAATTTAGCATGATGGGCTTACTAGAAGTTTGGATGTACAGGTTATTTTCTACTTTCTGTGACTGTCTTACTAGAACACTGATCACA----------------------------AAATCCTTACAGATAAAAGG------------TTTTACTGGGTATGGTgtcacacgcctgtaatcccagcacttgggaggttgaggtaagaGGA-------ATGTTGGGAGT--TTGTGGCCTACATAGTatattcaaggccaggctgaaataCAAAGCAagttccagtcttttttttttctgtctttttgagacagggtctcactatgcagttcaggctggccttgaactcaattggtagtccaagctggtctcaaattcaaaagcaatcctcctgcctcagcctcctgagtgctgggatta---caggcaagtgccaccatacctggctccgagttcctgtcttaaaaaaaaaatactaaatttttccAATAACTTATAATAACATGACTTTTAAAAGATTGATTTTGAGCAATGTTCCAGAAACAGTTGCAGTAATATAGTGGCTGATAAGTGTAAAGCAAGCATGAACCTGT--TGGGGGCCCAACCAGGTTACACACTCTGGTA--------GAAGCCAGCACCACCTACCATCCCCTTGCTTCCTGGCATGGTGCTG-GATTCCACACCATTCCTTGTTACCTGTAGTTCCTGTTGATGAACAGAGTCTTCTGGATCCCTGTCAAGCTTGCTGCTTATATCTTCCCGAAGCTTCTGCAAGCAGGTCCTAgcctgggggagggggaaggacaTGATGTTTGAGCTTCAGAGTAGGAAAGGGAACAACCTTTGTGTCCCATCCCCA----------TGCCTAGTC---CATGCCGCCATGAGGCTGGCTGAAGA------------GTCACATGGGAC-AATGGCCCAGCTGCTCctatacaaataacaaaataaatgaaccCCCTGCCCTGGTAGTACTAATGCCC-----------------AACACAAAGGACAAGTAAGGAAAATGTGTGGCATATTATGTGGGAAGAAGTGC--------CAGgccggggttttag-------ctcagtggtgttaagtgcctgcctggctctgGTGGCGGGGTTG-------------TAAGTTCAAAAAGATC-----TGTTCTGATGACAGCATTtaggccagggattcagctcagtggctgctatgagtttggtccctggtaccaaaacaaa---aaacaaaaagaagtgcCAAGGAGAAATGTAGC----CAGGGAGGGGCTGTGACATGGGGAAAGTGGCTGACAATAAGGTATTTGGTGCAAAGCTGGAAGTGTGTTGGCAGCTGGCAATTAATAAGCACTCACTGATTAATGGAGTGGATTCAAAGGATCAAGAATGATCTATGAACTGGGCTTGGTGGAgcacgcttgtaatcctagcagttgggagactgaaacaggaggatcatggatgaattcaagaccagcctaagctacaaaatgagttcaaagccatcctgagatgcatagggagaccctgtctcaaaaagacaataaataaataagaaaagaatctATGACACATGAGAGGTTGCAATGGCACTtcaatattacaaaaataa-aggagaaaaaa------gaacctATAAAAGAAGAGAACTTCCAAAATGTCATGTTTAGAAAA-GTAG---------CATAGGGAAGGTGTGCCCACCTCCTGGATGTACTGGACCTCACTCTTGAGCTGGTTAACACTCTTTTCATGAATCATCTTATCTCCTGATCTTCCCTTCAGGTACACCTGAAATGGGGAAAACACTGATTAGTTAAGCAACATCTAGGGAAATTTATTCATGTAAACACACAGCCTCACATACTGGTGGAATGAAAGTACATTGTTATTACCAACTGACTAGTGATTCAGATCAGAAGAGttaaaaat

a score=26929
s chr3            94732713 1124 + 160039680 CCCAATGCCTGGGTCCAGGTTCAGCCAAAGCCATTCACTACAGGC---TCTGGACTTTGGGTATTAAAATCCCT---GAAGCTGAGTAGGAGCTAGTGCACGTGTGCGCGTGCGCGcacacacacacacacacacacacacacacacacacacacacacTTTTCTACCTACAAGCTCTCT--GTCAA---TCAGCAGCCCCCTTT-GTGTACCTGCAGTGGTAAAGTAGAAAGAAAAAGGAGGGTGGGCTGAGCTCATCTTAATGATCTCTTCATGGCCATCATGGGACTCCACCAGTTCTGAAGCCAGAGAATGACCTGAGGAGTGGCCAGACACCATGGCATAGGTCTTTCTGCCTGCCTGCCAAAGAGACAGAGAGAAGTCTCAGAAACCACACAGCAACGAGGATCTCCTGCCCTGACCCACACCTCGAAACCTACAAGAAGCTTCAGTTTGACTC--CTTTCC-----------------CCTCCAAGAGCAGCCACACAGCAACAAGGACA------CAGGACAAGGAACGTTAGTAGAAAACTTGGGATATCTTTCATTTTAGTGGGAGGAGGGGGTGTCTCCCACTTCCCAAAGCAGGAGGCT---GAGCT-AGCTGGGTGTGTCTGAAAGGAGATGCTCTTGGGCTTGCAGCAACAGAGGTGGCTCCAGGCAACACTAAGGTGAGGTACCAGCAGCAAGAAAGAACTGGCTGAGAGGAGGCCTTGCCCCCAACAGACACCATGATACCTTCTGGGCTATGTGCTCAAGTTCATCTCCTGTCAGTTCACTCTGGAGAGTCAGCCTGAGAATGTCCACGCTGCCCTAGTAATGACAACAACAGCAACAGTGACCCCTTACCTTTCAAGCCCACAACAACG------ACCAG---CCAGAGTGTC----------CTCTCCAGCAGGCCTGTCTCTC-----CCTATTCAAAGACAG-----------CCCCAGAGAAGCATTCTCAGATCACCCAATGTCAGGTCACCCTGGA----------TATTAGGTC--TCTAGCAGGCCTCTGTCCACACACCTGAGAATGACTATACA-AGCCTATGGCTCCATGTAGCTCC--TGGGACATACCTTGATGCTCAGATCACAGGA-ACACAAGGCACAAATTACTCTTCCTCAGACATTGGAGAAATTATCCCTGGACTGCTAGCTCCAAGTCAGTAGTCTT
s HiC_scaffold_1 139674988 1130 - 233722169 CCCACTCCCCAGGGTCAGACTGCACCAGTGCCA----CTACAGGCAACTGTGGCCTTCTGATACTAAGATCCTTCCAGAAGATGGGCAGGAACCAGCATCCCTGATCTGG------------------------------------------CTGATTCTAGTCAAACTGCAGTTTCCCTTTGGCAAAGTTCAGCTGCTCTCTCTCAAGTGTttggaggaagaaagaaggagaaaatggcGAGGTGAGCGGAACTTACCTTAATGATCTCCTCATGTCCATCAATGGACTCCACCAGCTCTGAGGCCAGAGAATGACCAGCTGAGCAGCCAGACACCATGGCGAAGGTCTTCCTGCCCGCCTGCCAGAGAGAGACAGTGG---CTCACAAACTACTTGGCAAACCAGAGCTCCTGCCCTGAT----GCCCCGTGAAAGACTTGAAGCATTAGTCTGATTTTACTCTCCAAAAACTCACTTGAGAACCTCTAACAAAAACCACATAGTATCAAGAACTGCTGTTCCTGATGGCGAGCATTAGTAGAAACTGCAGGTTAgttatagttttagttttagtgagGGATCTC-CCTGCCCCAGAAAGCAACACACAATAGAGCTCAGCCAGAAGCATCTTCAG-----CGCTTCCAAGCTGGCGGCAGCAGAGGTGGCGCTAGGCAGCACTGGGGTGAG-CATCAGCAGCAGGAAAG----------GAGAATG----GCTCCCACCAGAAACCTCAGTACCTTCTGGGCTATGTTTTCAAGTTCCTCTCCTGTCAGTTCGTGCTGGAGAGTCAGCCTGAGAATGTCCACGCTGCCCTAATAATGACAATGACAGCAACAGTAACCCCTCACCTTTACTGCCTGTGGGTATGAAGTACACCAGGGACAAGAGTGCTTCTGCTAACGCTGTGTGGTGGGCCTTACTATCCACTGCCAAGTCACAGACAAGGAAAACTGGCATCCAGAGAGGTAGCAGCAGCTAGCTCACAGTCAACTCA-CTTGGAGTGCGGCATGTGCTGGGGCCGTCCAACAGTGCTCTCTCCACACCAC------AGACTAAACACCGCCTG----GCCATACTGCCTTGGTGGGGCTGACC-CGGTTCTAGGATTATAGGAGACACACTGCACAGGATGTCCCTCACCTAATCAAGGGAGGGTCACCCCTGGACTGGCATCCCCAACACAGAAATTCT

a score=5017
s chr3            94737284 144 + 160039680 atgagaaaaaaaatggagaCACCCTCTTCTTTTCA-CAGCCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATAC
s HiC_scaffold_1 233280271 127 - 233722169 ATGTAAAATAAAGTGG-------CTCTTCCTGTAAGTGGCTTGAAATGACCTGT-GAAAATGGTTTGCTGCTCTGTTGACCCAGAAA----------ATCATGCAAATCAAGAGGCTCAAATCTCTGTGCTCACTTTAAGAACAC

a score=12895
s chr3           94737285 628 + 160039680 tgagaaaaaaaatggagaCACCCTCTTCTTTTCACAGCCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATAC---TGAAGCTGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGT-TCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCC--ACAGCGGGGCTGGACAGGATTGTTTGCTAAAAACACTGCTACAGTTTTGTTG-CACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACT-GACACAGCCAAGTGAACAAAGCACCCAGTAT--------------CAGA-CTCAGGATCTTATTAATCCATATATGAGCTGCCCTG---CCACATGGAGTTGACCATCACTGAAAAGGAATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAG----------------------------ACTTACAGTTTAGGAATAGATTTAGCACAAAATAAATGTAaaaggaagaaagagaaagaaagagagagagagagagagag
s HiC_scaffold_1 85108639 649 - 233722169 TGAGAACAAGCAGGGAGGC----TCTTCCGGTCAGGGGTCCGGATGACCTGT-GAAAATGGCTCGCTACCCTCTTGATCCAGAGAACGCCCCCAAATCATGCAAATCGAGAGGTTCAAATCTTTGTGTTCACTTTAAGAACACCCGTGAGACAGCTCAGGCCAGCAAGGGTGTGCACGTCTAGAAGTC-------CCCAGG-------TGTCTGAAGGGTGTCACATTAGAGAAGCAGTGTGTGCCTCTCCCACACTGCAGTG-TGGAGTGGGTAGCAGCGCTCAGGCCCAGTGGCGGGGTTGGGCA-----------CAGGCACGGGGCCCAAATGGTGCCGACTTCTGCTTA-AAATGCAGAGAGGGAGGCTGAACCGCA-GAGTTAAATGTGGGCTCTCTGGCCACTGGATGGACCCAGGTGAACGAAGCACCCAAGATGCCCTGAGTACTTCCAGAGCACAGGGCTGGGTTCACCCATG-GTGAGCTCCTCAGCCCCCACAGCAAGGTGGTCTTTACTG-AAGGGAATGCCTGGTTCCTAACCTGGAAGAGGAAGTTGTGCAGAAGGAGAAGGTATCCTAGGAGAAGCTACAGAAACAGAACTTACAGCATGAGAATAGACTAAGTATAAACCAAAtgcaaataaagtttaaaaaatgtagagAAGAGTTAGGTAAAGAG

a score=7975
s chr3            94737293 591 + 160039680 aaaatggagaCACCCTCTTCTTTTCA-CAGCCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATAC---TGAAGCTGTCCAGACCACCTGAAGTTTGTTTA-TCAAAAGGCCAGGGGAATCCATGA---------------------AGTACTT-------ATGTAAAAGGTTCCCTTTAAAGGA--GCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCA--CAGCGGGGCTGGAC---AGGATTGTTTGCTAAAAACACTGCTACAGTTTTGT-------------------------------------------------------------------------------------------------------------------------------------------TGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACTGA--------CACAGCCAAGTGAACAAAGCACCCA----------------GTATCAGACTCAGGATCTTATTAATCCATATATGAGCTGCCCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAACTTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAGACTTACAGTTTAGGAATAGATTTAGCACA---AAATAAATG---TAaaaggaagaaa
s HiC_scaffold_1 149590752 776 - 233722169 AAAATGAATGCTCCATCTTCCTGTAAGCAGCCTAAGGTGATCGGT-GAAAAAAGTTTGCTGCACTTTTGA-ccagaaaacaacacaaaatcatGCAAATCAAGACATTCAAACCTTCATGTTCACTCTAAGAATGCATGTGAAACTGCCTATGCCAGCAAGAAAATGTACACTGGAAAAGCCACATGTATCTTTgcctttaaaataacatttttattagcacatgttcaCAATACACAATTTATTCATTATGGGAATGCAGTGTGTGCCATTCCA--------------GTTTTAGTAG-TGTGCCCAGGCTAAACAGAGGTGCCAGACCCAAGGACAGTGACCCAAAAAGATTACCGAAgtggtgtagtggtgcacacctgtaatcccagcactcagagacaGGAGAactgtagtgagttcaaggccagtgtgaattacatagtgagatcctgtctcaaaaaaacaaagaaagaaggagaacTAGAGAGAGTGAAAGTGAAAGGCTGTACAGGCTTAAAAAC--AGAAAGTACTGTTGAACTTAAGAGTTTAGATATAAATTCTCTGTTCTCTGAAGACTGGGTATCTTCTACGGGACAAAACACCCACAATTCACTGTTGTACTTACAGAACTCATGGTTGACTTACCCTATATGTGAGCTTTTCTGCCACATTAAGATGACTTTTACTGAAAAGGAACAGACTGCCCCTAACAGAACAGAAAGTTACATCAATGAAAAGG-----CTATCTTAAAAGAAACTTGAGAAACAGAAATACATggcataaaaaaaagaaa

a score=16591
s chr3           94737306 578 + 160039680 CCTCTTCTTTTCACAG-CCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATACT--GAAGCTGTCCAGACCACCTGAAGTTTGTTTATC-AAAAGGCCA----------GGGGAAT-------------------------CCATGAA------------------GTACTT-------ATGTAAAAGGTT-----------CCCT------------------------TTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCA--CAGCGGGGCTGGACAGGATTGTTTGCTAA--AAACACTGCTACAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCC--------------AGTATCAGACTCAGGATCTTATTAATCCATATATGAGCT-GCCCTGCCACATGGAGTTGACCATCACTGAAAAGGA--ATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAG--------------------ACTTACAGTTTAGGAATAGATTTAGCACAAAATAAATGTAaaaggaagaaa
s HiC_scaffold_1 49617611 703 - 233722169 cctcttcctgtaaGAGGCCTGAGGTGACTTGT-GAAAATGGTTCATTACTCTCTTAACCCAGAAA----------ATCATGCAAATCAGGAGGCTCAAAtctttgtgtatattttaagAATACCCAGGAATTGCCCAGGGCATCAAGGGTATGTATACCTAAAAGGCCACCAAGTACCTGAAGGATGGCACATTAAAAAAGCAGTGTGGGGCCAGGAACttacctcagtggcataggtgcctgcctggcaagcacaaggttgtaagtttgatccctggtacaaaaaaaaaaaaaaaaaaatcaaaaaaccaatGTGTGCCATTCTGGCATGACAATGATGGAGTTGGTAGGTGTGCCCAAGGCAAACAGTTGGGC---ACAGGGTCAGTGGCCCACAAAGCACTG----AATTTTGCTGCACATGTTTAAAAATGCAGAGAGTAATGCTAAACTGAAGGGTTTAGATGTAGATTCTCTTGTCATTGAACACACCCAGGTGAACAAAGCATCCGAGGTGCGCTACTGGGCACCGAGCTCTTGGCCAGATTAACATGTGTATGAGCTCCCCCTGCCATGTTGTGATGATGCTTACTAAAAAGGACTATAAACTGTTCCTAAACCAGAGGAGAAAGTtgcacagaagaaaaagatatcccagaagaaacaaaaacttacGGCATGGGAATAAGTTAATCATAAAAAAAATGCAACTAAAAGTAA

a score=20075
s chr3           94737319 573 + 160039680 CAGCCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATACTGAAGCTGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTAC-ACTGCTGGTGTCAGTGGATGTGCCCAGGCCA--CAGCGGGGCTGGACA--GGATTGTTTGCT-AAAAACACTGCTACAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCCAGTAT---------------CAGA-CTCAGGATCTTATTAATCCATATATGAGCT-GCCCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAAC--TTTCTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAGAC-----------------------------TTACAGTTTAGGAATAGATTTAGCACAAAATAAATGTAaaaggaagaaagagaaaga
s HiC_scaffold_1 23840276 608 - 233722169 CAGCGTGAGGTTACCTAT-GGGAATGGTTTGCTAC--TCTTGCCGCAGAAAATCCCCCAACATCATGCAAATCAAGAGGCTCAAATCTTCATGTTCATCTTCA---TGTTTAA--TACCCAGGCCATCAAGGGTATGCATATCTGAAAG---------GCCACCAAGTACCTG---AAGGAAGTCCCATTAAAGAAGCACTGTGTGCCATTCTGGCGTTGCCAATGGTGGAGATGGTAGGTGTGCCCAGGCTAAACAGTGGGGCTGGACACAGGGTTGGTGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAAAGAGTAATGCTGAACTTCAAGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGTACTGCTGTATTTACAGAGCTCATGGCCAGAATAACCCATACATGAGCTCCCCCTGCCACACTGAGATGATCCTTACTGAAAAGGAATCAATTGTTCTTAAACCAGAGGAGGAAGTAGCACAGAATAAAAAGATATCccagaagaaactaaagaaacaaaacattatagCATGGGAATAAattaagcataaaataaatgaaaataaaagttaaaaaaaaa

a score=11297
s chr3           94737321 513 + 160039680 GCCTGTGGTAACCTGTTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATAC--TGAAGCTGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGG-ATGTGCCCAGGCC--ACAGCGGGGCTGGA--CAGGATTGTTTGCTAAAAACACTGCTACAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACTGACACAGCCAAG-TGAACAAAGCACCCA---------------GTATCAGACTCAGGATCTTATTAATCCATATATGAGCTGCCCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAACTTT---CTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAGA
s HiC_scaffold_1 45895158 505 - 233722169 GCCTGAGGTGAACCA--AAAAATTGTTCACTACTCTCTTAACCCAAGAAATCCCACAAATCCATGCCATTCAAGAGGTTCAAATGTGCATGTTCATGTTAAGAACACTGTGACACTGCCAAGGCCACCAAGAGTAAGCATAGCCAAA-----------------AAGTAT---CAGAAAGATCTCACCCTAATGAAGCAATATATGCAACTCCAGTGT--CACTG-TAGCAGAGGTGGCCTGTCCCCAGGCCAAACAGAGGCACTGGACTCAGTGTTGGTAGCCAAAAAGAGGACTGGGTTTCTGCTGCACAAGCTTGAAAATGCAG--AGTAGTGTTGGGCTTGTGGGTACAACTGAG-ACTCTCCAGTCACTG-CGCACACAAGATTCACAAAGC-CCCATAAGGGCCACAGCACGTGCTGAGCTCAGGCTTGGGTTAACCCACACATGTG----CACACTGCAAAGAGAGGATCTTTGTGGAAAAGGCACAGATTTTTTCCCAAGCCAAAAGAGATGGCTACACAGAAGGAAAAGA

a score=6417
s chr3           94737336 249 + 160039680 TTGAAAATAGTTTACTACCCTCTGGATCCAGAAATCCCTACAAAGTTATTCAAATCAAGTGGTTTAAGTCTTTGTGTTCACTTTAAGAATACT--GAAGCTGTCCAGACCACCTGAAGTTTGTTTATCAAAAGGCCAGGGGAATCCATGAAGTACTTATGTAAAAGGTTCCCTTTAAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGTGGATGTGCCCAGGCCACAG--CGGGGCTGGAC
s HiC_scaffold_1 46850653 240 - 233722169 ttgAAAATGTTTCATTATTCTCTTGACCTCCCAAACATGACAAAATTACACAAATCAAGAGGTTCAAATCTTTGCAGTCACTTTGGGAATGCCCAGAAACTGCCAAGTCCATCAAGGGGATGCATATCTAAA---------AAGCCACCAAGTATT--GGGAAGATGTTACC-TAGAAGAAGCCATatgtgccacttgggtgtttcaATAGTGG-GCTTGGGAGTGGCACCAGGCCAAAGAATGGGGCTGGGC

a score=14207
s chr3            94737509 366 + 160039680 AAAGGAGCCATGTCTGCCACTCTGACCTTACACTGCTGGTGTCAGT--GGATGTGCCCAGGCCA--CAGCGGGGCTGGAC--AGGATTGTTTGCT-AAAAACACTGCTACAGTTTTGTTGCACATGCTTAGAAATGTAGGAAGTAATGCTCAACTTAACGGTTTAGCTGTGAATTCTCCAGTCACTG-ACACAGCCAAGTGAACAAAGCACCCA----------------GTATCAGACTCAGGATCTTATTAATCCATATATGAGCTGC-CCTGCCACATGGAGTTGACCATCACTGAAAAGGAATAAACTTT--CTAAGCCAGAAGAGGAGACTGCACAGAAGAAAAAG-----------------------------ACTTACAGTTTAGGAATAGATTTAGCACAAAATAAATGTAaa
s HiC_scaffold_1 233280714 421 - 233722169 agagaagcACTGTGTGCCATTCCAGCATTACAATGCTGGAGTTAGTAGGGATGTGCCCAGGCCAAACAGTGGTGCTGGACCAAGGGTCAATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTACTGCTGAACTGAAGGGTTTAGATGTACATTCTGTGGCCATTGAACATACCCAGGTGAACAGAACACCCATGGCAAGTCACCATATTTACAGAGCTCATGGCTGGATTTACCCATACATGAGCTCTGCCTGCCACAGTGAGGGGATCCTTACTGAAAAGG-ACAAATTGTACCTAAACCAGAAGATGAAgttgcacaaaagaaaaagatacctcagaagaaactgaaaaaacaaaaacttatggCACAGGAATAAATCaagcataaaataaatgcaaa

a score=9529
s chr3            94754844 401 + 160039680 CATGTCATC-----CTTCACTAGACAATCTTCTAACCCTGCCAATCAAGGACCCCTGCCCATTCCTACTTAAGGATAATCTCAGGGGACAATGGCCCCTTTCCCTGGAATCT----CAGGATGGCAAAATGACCTGAACTGGCCAGAA-----TCATCCAGAAGCAGGGATCATCCACATTACTGTCCTGGACTGCCTCGGTTCGGACCTTTTAATTGAAGCTTTCCTTTAACTTCTAGGCCCTGATCTTTTCCTTCTAGTAAACTCCT-CTTTAGCTAGCTAG-GTTACTTTCTGCTGTTTACTTTAGCCAAAGGAAGGTAACAGGATTGTCT------AATGGGTTTGAGATTTATTTGTACT-TTATATGCCAATATAACTTACCAATGTCACTTTTAAACAAATACTTTTGACATTAAAA
s HiC_scaffold_1 139689516 378 - 233722169 CATGTCCTCGATCCCTTCACTGGGTAATTTTATGGGCCTACTCATAAAAGAACCCTGTCGTCTCCTGGCCAAGGAGGGGGTAAGAGGACAATGGCTCCTTTTCCTGGAATCTTGGACAGAATGGCAAAAATAACTACAACAGCTGGACTCAGTTCATCCAGAATTAGAAAT------------------------TCTCTGTTAG-----------------TTCCCTCCACCTAACCAGCCCCCAAGACTTCCTCAGTTTACACTTCTGCTTAAGCTAGCTAGAGTCATTTTCTATAGTTTACTATGATCAAAGGCAGCTAAAGGACATATCTAATAAAAATAAGTCTGAGATTTATTTGTACTGTTATGCGCTGATCTAACTTACCAAAGTGGTTTGCCAAC-----TTTCTGACCTTAAAA

a score=51296
s chr3            94755721 3029 + 160039680 aaatcagttgattcaTTTCCTAACTCACATCTTTTGCACCCTCACTGACCATGCTCAATGGAATGAGTAAATGACTGACGACACGACAGGTTCCCAGGGACTGTCCAGAGCCTTAAATTCTATTTAGAGGTTGGCTCAGAGGAGAAGAATCTAGGACAAAGCCTGCCTCCTGACTGACTGATTGTTTACTCTCTGT---CCTTCTTCAAGAGCCCAGGAATGTCTCCAAGAGTAAACCAGG-CAAGGGTTATTTCATTCCTGGCTTTATCATAAAATAAGTCTCTCTCTCTCTCTCCCTCttttgtttttttcccaagac-----------atggtttctctgtgtagccttggctgtcctggaactcactctgtagaccaggctggcctcaaattcagaaatccacctgcctctgcctcccaagtgctgggattaaaggtgtgcgccaccaccacctggcCATAAAATAAGTCTCAAGACTAGTCTGTCTCCCCTCTGACATATTGCTATTTTC-TACCTCTGCTTTCTGTCCCAACAAACAAGAAAGAAAAGCATCAAGGGACAGCAACAGGTGACATATCCTTCTCTGTACTGCCAGGATTGTGGTTTTAAAGATCCTTCTTCTATATGAGGTGGGTCTTTTTTCTAAGTCTAAAAGAAGCCCATgggtctagagagatggctcagtggttaagagaactgcctgctcttccagaggttctgagttcaattcccagcaaacacatggtggcttacaaccatctgtaatgagatct-gacgccttcttctgatgtgtttgaggacagctacagtttatgcatataaatacaataaataCTTCTTCTTTTTTTGTTTTTAAAGCCCATGACGCCTTTTATTCATTCCATGTTCTTTCCCTGACTCAACCATTCCAAAGCACCAAGAGCATTG-----------------AGCACTTGAGGCTGGGACAATAGGGTATGACTAGTTGGTTGGCTGAACTTTGGTTTTGTTTATCTGATTTGGTCAACCTCTCTTACCTGGGGTA----------GGTTGGGGGGGTGGGCTGGGCTTTGGGCAATGTCAAGACTTG-----TAATGTGGAAGAAACATTCATATTTCTAGGCAAAAATGTCAAGGGAACAGTGAACAGACTTCAATGATCACCTGTACTCTGAACTTCTAATGAGCACCTATTCTACAACTATTCTTTGAAGA---GCCATAATCAGGCTGTAGCTGAGTTAGCTTTGCCTCAAGGACATGCTGAGACAGGCAGGCGCATAGGAATCACATgggg----------------------cggggggggggggggggggggggggagggCG---------CACAAACTCCCCATCACTTTGGCTCTCATTTCATTCTCCCACAACAACTTGGAAATTAAT----TAGCACAGATCTATGGTGTATTTGGATCCCCCAGCAACGCCTAGAAACATACAGCATCAAATTACAGGCCTTTCCCTCTGGAGAGAAAAAAAATCATGTGGTCAG-TTGAGGGTGGCATAAA---GGGAGTGAGGGAGTGAGG---AGGGCATAAGGGGAGCAGGGCAGACTGGATTGCACTGGAGAACGCCCCCTCTCTCT--TCCTAACCCACTCCAGGTGGGTTCAGGTCTC----------------------------CACCGGAGTTCCGAGGCACCCCCTTCAT-CCCCTACCG-GGACTTGGCATCTGGACATGGAAGCAAAACCAA-------------GGAAGCTA-CTG--GCTGGCCAAAAGGGGGTTGGAGATCAGAAAAGCAAGTTTTTTaaaaaaaaaaaaaaaaaaaaaGGAGAAATCCAAAAGAGGTGACCATCGAGTGGAGAGCCCCATACATCCTCTGGGCGAAAGGTAAAATCTGGGACCAATTTCTTAGTTGTCTGAGACCTATCCCGCCCACCCAAGCTCTCCC-CTCTCTTTTCCCACCCCTAGGATTCGACCCTCTGCCCCCTTTC--------CTAGTTAAAGGATCGCCATCACAGAAGGCTTTGAAGGGGTTCTGAGGCCATCGGGAAACGCGGAAAG-GCGTAACACACCTGGGCCGG-CGCAACGTCCGAAACAGCGCAGGGATCCGGTCCCTCGAGCG---TCTTCCACGACCCAATCTAGCTGCCCACGAGACGCCTGAGTAACGCGC--------------CCCATGCCCGAGCCGGGGCTACAGTGTCCGCGCCAAGGACAGGACC-TCCCCAGCCCTGGAGCTGCCAGTGTTTCGTCCTGTGCTTCCCACTCCACAGTCCGCCACAGGGCAAAGGAA----AAAGC----CCACGGAGCGACGCGGGGCTGACCGCACTGAGCCCGGCGTCAGGTGAAATGGGCTACCTGAGCCTGAGGCACGCGAGCGGCGGAGCTGGAAAGCCACTGTGCCTGAGTGGGAAGGCGGGGTGAAGGTGACGACCTACCGCGGTCTGGCTCTCCGGGTGCACGTCCACCAAGGTACACCAGTTCCGCGTCCCGTTCAT---CTTCACGCGGAGGTCGTATGAGCT-------TCCTCAACTCCGAGGTCCCGGGGAAACTAGGCCCGCAGGCGGGTGCGCGCGTGGAACCGCCCCCTAGTATAGGCGCGTCGGGGGCGGGGCTGAAGATGGGCCACGCCCAGGGCGGTATTTA-TCAATGAGGTAGAGCGGAAGCGAGAGGTGGGCGGTGCCAAGAGGCTTCAGGACTCGCCTACCCGTGCTATGGAC---GATTTACGTAAAGGTGAGGCTTGGGAGTGAAGGTCGGGTGACCGCTTAGGAATTTTACTAAGGGTACGACAAGGTATCTTGTGGTATCTCATTGGTCTTT---TTCCTTTCAGTTTTCCAGGTTCGGT--------GCGGGAAAGAATCGGTCTGGTCGTCT----------------GAGTTGGGGCTTGCACAAGCTTCTGTG------------GTCTTTCCTGAAATGTAAGCCAGCCTGTAGGCTTTTTAGAGCTGAGTACATCTTTCCTCAGAGTTCTACCACACAGGTAGAAAGGCAGGCACCAAAGA-CCAGCTCACTCGGACTAGTCTAAGCCAGTCTGGCAGGTGCTTTTTCCTGGCAAGTAGCCCAGGTCGAAGTCAAAGCCAGCTAAGCTCTGGGTGGGGCTTGCTTTGCAGAAACTAGACTTATATGGTGGGGAGAGGCGGGACACATGGCCTTAAAAGGAATT
s HiC_scaffold_1 139690840 2697 - 233722169 aaacctcttcccTTATTTATTCACTCCCACATT--GCACACGCACTGAGCATTC---------------ATTCAGTGAACACCTGACAGGTTCCTTTGGATTATCCAG--CCATAAATTCTGTCTCCacactggctcagaggagaggaaTCCAGGGCAATGCCTGTCTCCTGACTGATGAATTGTTTACCATCTCCTCCCCCTCTTTAAGAGCCCAGGAACATCTCTAAGAGCAGACCAGGACCATAGCTATTTCATGCCCAGCTTTGGTGTAAAATCAGTTCC--------------------AGGTTCAGCCCAGAAAGAACGAATAAAAGGGAATTTCTGCCT---CCTTCTTGCTCCAgagttctttct----------ctcttcttagcTTCAAA-------------------CCCAA---CTGTGGTTGGAGA--------------------CTATGAA----------------------TTCCTTTCT-------TACTATTTTCCTACTCATTCCTTCTGTGCCACCaaacaaacagtaaaaacatCAAGGGACATTAGAGGGTAGAAATTCATTCTCAATGCTGCCAACATCATGGTCTTAACA------CCTCTAT-------------CTTTTCTG--------------------------------------------------------------------------------------CAGcaagcaaaa--------------------aaagaaatctagacaCCTCTATCT------------------CACAGCCT----------------------------------------------------------------------------TTTCCCAGTCTCAATCATTTTAAACCAGCAAGAAGACTGGTTTGTAGGGCTTGAGTAGGGCTTGAGCTTGACACAACAAAGGATGGAT--------------------------TTTCCCCCATCTCTTCAGCATCCAACAGCTGGGGGAAAAGACTGGAGGTTGGTGAAGCGGG------TTTGGGCAGCAGCAAGACTTGCCTAGTAATGTGTCAGAAACATTCATAAGTCTAGGCAAAA-TAGCCAGGGGACTGTAAAAAGA----AACGATCGTCTGTATTCTAAACTTCAAATAAGCACctattttacaaatattctttGAAGAAGAGCTATAATCCAGTTCCAGTGGGGTTAGCTCTACTTTAGGGGCGAGCTGAGACAGGCGCGGGCTAGGGAATCAGCTGGGGGCGGCGAGGAGCGGGGTGGGGTCGagtggggtgaggtggggtgtGGGAAGGTGGTGGTGGATTACAAACTCCCCATCACCTTGGTTCCCACTTCATGCTC----------TTGGAAATCGATGAAACAGTTCACAGCTATACTGGGTTTCATTCCCCCAGCAA-GCCAAGAAACAGCCA----CAAATTATACTCCTTTGTCTCTAGGGAGGAGAAA--TCACACAGTCTGCTTGGGGGCTGTGAGAGCCTAGGAGAAAGAGACTAAGGGCCAGGGAACGAGGGAAGCAGGACAGAAAGGCTTAT-CTGGGTTTTGCCCCCTTTCTCCAACTCTCACACGGTCCAGAAACCCTTAAACCCCTGAAACGTGTCCCTTCTCGCTTCTCTCCCTCCCAGGTTCTG---CATCCCCTTCATACCTCTGCCCCGGGTCTGGTGGCTGGAGACAGATACAAAACCAACAAACCTTCCCAGAGAAGCTATCTGATGATGGCCTACAGAGGGAAGG-GAGCAGAACTGTAAG---------------------------GGGGAAAC-----AGTGGGGACCACCAGATGGAAAGCTCGAT---TCCATTTAGCATAAG------TCTTTGATTAACGTCAGAATGATTTGGGTCCTA--CAGCCTCCCACAGCCCCCCAACCCTGAGTCCCAAGACCAAGAATTTCActctctatcctttttttcttgttactgacCAAAG------CACCATAAAATTCTCTGAAGGGCCTCTGTGGTCACCAGGACCCACAGAAAAAGCTTCTTCCAGTTCGACGGGACACAAGGTCCAACAGAGCGCTGGGACCCCGGCCCTAGGACGAGTGCTCTGACGATCCAATCTCGCTGTCCCTG-GACGCCCGAACGCCCAGCAAGGGCTCCTGGCGTCCAGCCGCAGGCAGAAGCCGCAGGGTTCTC-CCAAGGAGAGGAACACCCCCAGCCCTCCAGCCTCGAG-ACTCCATCCTGACCTTCCCAG-----AGCTCACCGCagggaaaagaaacacaagagCGCGACCGAAGCGCAGCGAAGAGCTGACTGCACTAGT----ACACAAGGTGATGT---------------------------CAGCGAACCGAGAACACCA---------AGCAGGCAGGCGGCATGGGCACTTTTTCTTACCGCGGCTTGGCCCTCTGGGTGCACGTCCACGAAAGTACACCAGTTCCGTGTCCCGTTCATTTCCTTCCGGCTGCAATCGTAGCAGACAGCCCACTCCTCCGCCCAGCAGCCCGGGTCCTACCAGGTCC-----------CGTGTGCGGAACCGCCCCTT-GTATAGGTGCGTCAGGGGCGGGGTCGGAGATAGGCCACGCCC--GCTGGCAGTTAGCCAATGAG--CGAGTAAAAGAACAAGGTGGGCGGTGCT--GTGACTTCAG---------ATATGCCCCATAAGCTTAGATTTACATAAAGGTGGGACTTGC-AGTGA----CCCAGAGCTGCTTGGCAGTTT-------GGT-CTATCGAGTATGTGGTTGTACCTCAATATTCATTAGCTTTGTCTCAACT--CCAAGATCAGTTGCAGTCAGAAGTAAACATCTTGCCTGCTCCTTCCTCTACAGAGGATGAGGAGTTGGAACACTTACACACTTCCATacatttttcctcttcctctccctacaCAAAA-----CCTGTGGACTGT--AGAGCTGAGAAAACTTTTTCTT------------CCTCGGTAGAAAAGCAGGCACCAAGGGGCCAACTCAC--AGACTAGCCTAAGCCAGTCTGGCAGGTGCCCTTCCCTGGCAAGACGCCCGGGCCAAAGTCAAAAGCAGGTAGGCACTGGGTGGGGCTTGTTTTGCA-CAGCTA---TTATATGGCAGGGAGAGGCGGGACACATTGCCTTAAAAGGAATT

a score=97677
s chr3            94760014 3394 + 160039680 [encoded data, 4146 characters]
s HiC_scaffold_1 139694049 3812 - 233722169 [encoded data, 4146 characters]

a score=16201
s chr3            94764236 562 + 160039680 AGTCCTCAGTAGGGTTAGAGCAGCCGAGGCCACCGGGACCCTTTCCCCAGACTCCCGTTCTTGGCTTCCTTCCT----------CCAGTCTACCTTTTCCAAAGCAGACGAGAGCCTGAAGCAGACTCTGCCTTGCCAGAACTGTCCAGGTTATGGATCACAGGAGAGCTAAGGTGTCTTTGACAGAGCTGGGGTGTTAAGTGAGAAGGCACAG-TGAGGGGTCAGGA-GGAGTCACCTGATCCCGGCCACGGTTCACCCGATCTGTTAACAGTTCCACAGTGTTCTTTTCTTCATCTAACTCCGCTTCCAGCCGCGAGACTTTCTCCTGTGGCAGGAGAACAAAAGGCCAATTCTGTCTTTAATTCTGCACCCTAGAATGGCAAACCCAGACCAAAGCCTCATCAAAACTTCAGC-CCCACAGACTCTTCTCGCTGGTACTTTCCAGAACCCTTCTGGTCCTTGCTCCAGCTTGCTCAGTGCTGCCATGGAGCCAGCGCCCTCTGCTGACC--------------------------------------AGGAAGGCAAACCCTAGAAGCTATTTCTTCTGGGAGAA-CTATCTCCCTAATGGAAAACCTCAA
s HiC_scaffold_1 139697942 557 - 233722169 AGTTCCTACTCAAGACACAGTGGCTCAAGCTACAATG--CCTTTATTCAAA------TTCTTGGCTTCTTTCCATCTGAGGAAACCTGCCAATCCTTTCCAAAGCAGACAAAACTC-----CAGACT-------------ACTG-----------------AAGCAAACAACGTTGTTTTTGAGAAAGCCGAGAGGTTATGTGGTTCGGAGTAGATGAGTGGTAATGTTGAAGTTACCTGGTCCCGGCCACGATTCACCCGCTCTGTTAGCAGCTCTACTGTGTTCTTTTCTTCATCTAACTCGGTTTCCAGCCGAGAGACCTTTTCCTATGGCAGAGGGACAGA----CAATGCAG-CCTAAATGCTGGACACTGGAATGCCAAATTCTAAACAGGACC-CACTCAAACTCCAGCATCCATAGACCTTTCTCTCTTGTAC-CTCCAGGATTCTTTTGGTCCTTGTCCTGGCT--CCCA--GCTACCAAGGAGCTGGCGCCCTCTGCTGATCATGTGTGGCATGGGGAGAAGGTTGTGTTTGGGGGCAGGAGGAAGTCAAACCCC---AGCAATTTCTAACCAGAGAAGCCATTTCCTTAATAGGAAAACCCAA

a score=15279
s chr3            94765314 449 + 160039680 CTTAGTATCTGCATTTAGTTCACAATTGCTAAAACACTGTAACCGAGT---------AAAACCATCAGT-TGTGGCTTCTCGATTTTGTTCTCTAGTACAGAGAAAGG--CTTGGAATAAATTGGCTCCTTTCCCCACTTCAGTCTCACCTGTACCAGAGCCC-------------TTTGTCCCTACCTAACCTGTGCAGCGGCTTTACCTCTAGGCTCTTCAGCTGTCGAGCCTTGTCGTCCTGGAAGCGTTTCTTGTTCTCAGCCTCTTGCTCTAGACCCTGCAGTCGCTGGGCCAGCAGCTCTTTGTCCAGCCTGGCTGTGTCCCGCTCAGCCTGGGATGTCTGCAGGGCTTGCCGCAGCCTTTGCAGCTGGACCCAAAGATAACACACAACAGCTCAGCCTAATTGAAATATGGGGGATGGGTGTGCCCTGCCCGAggggagaaatacttcactactgacactctttaga
s HiC_scaffold_1 139699896 437 - 233722169 CTTAGTA-----ATTTAG--CACCGtttccaaaaaattgaaaaagggttgaggatgtagAGT--TCAGTATGAagcccctggattcaatcttgaaatgaaaagaaagatacttGGGAGTCCCCTGTCCCTTTCCCCACAGAAGGCCTGCCTGTGTCAGGACCCAGGACCCTGTCTTTCGGCCTCCACCTCATATGT-------CCTGACCTCAAGGCTCTTCAGTTGCCTGGTCTTGTCATCCTGAGAGCGCTTCTTGTTCTCTGCCTCGTGTTCCAGTCCCTGTAGTCGCTGGGCCAGCAGCTCTTTGTCCAGTCTGGCCGTGTCTCGCTCAGCCTGGGTGGCCTGCAGGGCCTGCCGCAGCCTCTGGATCTG---CCAGAGGTAA-AAGGGTGAGCTCAG------TGCAGTGTGAGG--TGG---------GCTTGAGGGGAAAAATACTTCATCACTTACAACCTTTAGA

a score=23089
s chr3            94767013 674 + 160039680 GTGGTTCCACATGAGTCTGGGGCCTAGCACTCCAGCCATAGGTTCAGTGAGAAGGCAAAGACTTTCAAAGCCATGGACAGG--------------CTCCTGTTGTCTACGTTCCTACCTCATCCTGAAGCCGGCTCAGCCCCCCTGAATTCTTTTCAGCCTCACTGGCCCAATCCTTGGCCTGACGCTGGGCATCAGCTACTTCCTTCCGGGCCTTTTCCTTGTAATCTTCCATCTGAGCCTGGAGCTGCTGCAGGGCTAGCTTGGAGTCATCCCCAATCTGCTCCAGCTAAAACGCAGAGGGAAAAGGTTTCTGTCAGCACTGCACCTCTGTAACAAATGTTCAGTCCCTTCTCTAGACCCAGCTTCCAAGAGTCTCCCATGAGCTTCCGCTCTGCC-AAGCAGCTGTCTCTAGCTTGCCTGGTCTAGATCCCTGGAATGGCTAATCGTTATAT------------ATTCAAATTCTGG-------ACGTTGGAGTTTTAGC--CC---------ttacttatcatctctgatctcattttcctgtctataaaatgagataataacagcacctacattgctgagttgatactgaattatgttaatgatttaaaatacctataa-agtggctgatactaagtaaatcttcaatgaCCACATTTCTGCAAACTCAA----------GTTATAAGACGTACTTCTAAGATAGAAAATCTGCCGACTAAACTA
s HiC_scaffold_1 139701000 680 - 233722169 GTGGCTACACCTAAACCTGGG----------CCAGC-----------TTAGGAGG-AAAGATCTTCAAACCCAAAGACAGGGGATGGGTCCCACCTTTTTGCCCTTAAGGCTCCTACCTCATCCTGAAGGCGGCTCAGCCCTCCAGAGGTCTTCTCAGCCTCACTGGCCCAATCTTTAGCCTGGCGCTGAGCATCTGCTACCTCCCGCCGGGATTTTTCCTTATAATCTTCCAGCTGAGTCTGGAGCTGCTGCAGGGCTTGCTTGGAGTCATTCCCAATCTGCTCCAGCTAAAGCACACACCAAAGAGTTT----TCAATATTACTTGTGTTCAACTGAAGACTA-TCCCTTCTCTAGATCCAGCTCCAGAGACTCTCCCAAGGGCCTTCCTGCAGCCAAAGCAACTTGCTCTTGTT---CTTGTTT----------AACAGCTGGTGGTTATATGCAGAtacctgggttcaaattctggcTCTATCACTT---AGTTTTGGTGACCAAAGGCAAGCTGCTCATCCTTTCAG-TCTCAGTTCCCCATCCATAACTTGGGGTAACAACAGTACCAACACTGC-AAGCTG-TTTTGAGAATTGTTAGTTATTCACATAAAGTACAACAGTGCCTGCTACAAAGTAAATCTTCAACAACCATATTTCAACAAACACAAGGTGCCAGTGGTTACATGATACAC-TATAAGA---AGAATGTGCTGACTAAACTA

a score=61827
s chr3            94768985 1728 + 160039680 aaaagcaaacaaacaaGATAACAGTAATAGTAAAGTTTAAAACTTTTTTAAAAAAGAAAAATTTGGTCCAATCCTATC--------------TGAGAAAAAGTAGTGCC-ATACATCCTGACCCACCTCCAGGGTTAGCTTCTGTAGGGCTCGCACCCCTTCCTAAGGGGCCACACTACCCATATTCACCTCTTTGTTGAGTCGGTCTACAGTCCTGTTCAGCAAACGCTTCTGCTCCTCCAACTCTGCCTTGCTCCTCCGGAGAGCCTCCCGCTGCTTCCCCTCTTCCTCTAGGGCCCGGTTCAGTGCTTGCTGTTCCTGCCCAAGGCGTGCCAGCCCCCGCTGGGCCTCATCTAGCCGGACCTCCAGAGCCCGCTTGGCTGCTGCCAGGTTCCCCTCCTCCTCCCGGGCAGCATTCAAAGCCTCTTCCAGCTGCTGTTTCTCTACCTGGGAGGCGGGAGAG---GAGGAAGGCTGGGCTGAGAGAAAGGAAAACTCAGGCTGAAGCATTGGAGATAGGAAGATGAAAAAGGTAATGTTgggtgtggtgacacacatctctagtcctagaacttgtgaggctgacacaggccgacctcactggtctgcatagtgagttccaggccaggagggattacatagtcagatcttgcctaaaaaaaaaaaaaAAAAAAAGTGGACATCCAAACCGACTCAGAAATCAAAGCACTGAA--CAAGCAAAGG---GTGGGAGACAACAATACCAGCGCAGAGTTTGAAACATTCACACCAAATCAG--TTCAGAAAACAAACCTAAGCTTAATAGATACATACGGTGAGGGAAAAGGGCAGTGCACATTGGCAGTAAAACTGATGGCCACATACCGAGATGGGAGCACAGTACATGGGGGCGTTCTAAGCTGAGTACCGAGGGGTGGCAGTGCATGAGGGCACACAACTGAGAAAGGAGGAGGGCAGGAGAGAGAGCGGGGAGACCCCAAGGTGGACAAAAGTGTT-ACCTCCAGCCGATGCACTTTGTCCCGAAGCCGTGCCTCCACCGCTTCCCCACCTTCCGCCAGACCTCGGGCCTCCTTCAACTGCTGCTCCAGACCCAGGATGCGCCTTCGGAATTCGTCATTTTCCTCTTGTGTCTCCCGAAGTGTGGTTTCCACGGTTGCCCGACGCTGCCCCAGCACCATGGCCTCTGTCTCTGATGCCACCTTAGCCTGCGGGCAGTTGGGAGAATCGGCTCAGACCGAGGGGCTCCTATGGGT-----------AAGCATTTACA---CCCAGGAAAAAGGGGTACCTGAGAACCCACTAAAAGCTCACAGGAGCTAGGGATAGAGGGGTAGCCCTAGCCAGGAACCTTCCTGACAATCTTACCCCT---ACACAGATGCAGCCACC-----CTGCCAAATTCTGCTATTCCCCACACACAGGAGCCTCCAGAGCTCCTCAGTACATACCCAGGATAGGTTAAGTTTGCAGGACCTCTGGCTTCTCAGCCCTCCTGACCCCTCAGCCTCCACCTCCTGAGCCCTGGGCCCACTCCCCTTGCCTTGGAAGCCTCTTCACAGTCCTGCCGCAGTTGCTGCAGGGTCTTTTGTAGCTGGAGGTTCTGCTGCTCCAGCTCTCGGCCTCGATCAGCCTCCTCCCTCAGCGCTGCCAGCTGCTTCTCTAACACCTGGTTCTGGTGTCGCCCAGTCACCTCCTGGTTCTGCTGCTCTGCCTGAAGCTCTTTAAGCTCCCCCTGGGTGCGTCGAAGCTCCTAGAAAGGAA
s HiC_scaffold_1 139702110 1564 - 233722169 AAGGGCAAGAACACAGAAAGAAGGTAA----GAAGTCCAGTACTTT--------GGAAAGATTTGGCCTTGTCCTCTCAACCATGTACTTGAGGAGAGAGACAAGCTCTGATGCATCCGG---CACCTCAATG---AGCT------------GAGCCTCTTCCTAAGGGCCCGGGACTACCATGCCTACCTCCTTGTTGAGTCGTTCCACAGTTTTGTCCAGCAAACGCTTCTGCTCCTCCAGCTCCACCTTGCTTCGCCGCAGCACCTCCCTCTGCTTCCCCTCCTCCTCGAGAGCCTGGTTCAGAGCCTGCTGCTCCTGCCCCAGGCGCACCAGGCCCCGCTGGGCCTCATCCAGCTTGATCTCTAGGGCCCTTTTGGCTGCTGCCaggctcccctcctcctcctgcgcTGCATTCAGTGCCTCTTCAAGTCGCTGTTTCTCTGCCTGGGAGAAAGGAGAGATGGGGAGGGGCTGAGCTGGCAAGAGGC----------TTGAGTCATTTGAG-------------------------------GGTG-----------------------------------CACAG-------------------ATAGCGGGG--------AGGAAAAAT---------AGGTATTTATGAAAAAAAGTGCAATGAAAATAGGCTCAGAGAAAGTAGCAAAGAGATCAAGACATAGAGACCCAGTAAAgacaaataagaaacaaaaatacccaTGCAAAGTT-GAAACATTCACAGCAAAGCACACTCCAGGGAATAAATGCAAGGTTAACAGA--------------GGACTTAACAGAGGACAAGGAAGGTGAAACAGAAG----CATACTAC--TGACAACATAAAACTTGGCAGCGTATCTAGCAAAGGG--AAGATCTGGCCAGGTTGGAAGGCA--------------GTGAAGGCCAGGAAAAAG--------GACCCT---GTGGGCAGAAGTACTGACCTCCAGCCGCTGCACCTTGTCCCGAAGTCTCGCCTCCACCGCTTCCCCGCCCTCCGCCAGCCCTCGGGCTTCCTTCAGCTGCTGCTCCAGACCCAGGATGCGTCGGCGGAAGCTGTCATTTTCCTCCTGGGTCTCCCGAAGTGTGGTTTCCACTGTTGCCCGACGCTGCCCCAGCACCAAGGCCTCCTTCTCGGCTGCCAGTTTGGCCTGCGGGCAGTGTGGAGCAGTGGCTCAGACCGCACAGCC----TAGGTCACAGGCCACGAAGCACACACATACCCCAGAAGCTAGCCCT--CTGAGAGCCCACCCAGAGCTTCAGAGAGGTGGGAGTAGAGAAGTAGCCCTGGCT-----------TAAGAGTCTTGGCCCTTAGCCAGGGTTGCTATCACCACCTACTGGCAGATCTTGCTGTGGCC---ACACACAAACTCACAGAGCTGCT-GGTACGTACCCATCACAGGG-AACCTTCCATGCCCTCTGGCTCCTCAGCCCACTAGACCCCTTGGCCTCCACCTCCTAAGCCTTAGGCCCACTCCCCTTGCCTTGGAGGCCTCTTCACAGTCCAGTCTCAGCTGCTGCAGGGTCTTTTGTAGCTGGAGGTTCTGCTGTTCCAGCTCTAGGCTTCGATCAGCCTCCACCCTCAAGACTGCTAGCTGCTTCTCCAGCTCCCGGTCCCGGTGTCGCCCAGCTACCTCCTGGCTCTTCTGCTCTGCCTGCAGCTCCTTGAGCTCCTCTTGTGTCTGGCGCAGCTCCTAGGAGGAAA

a score=66588
s chr3            94772587 3781 + 160039680 [encoded data, 4126 characters]
s HiC_scaffold_1 139706132 3526 - 233722169 [encoded data, 4126 characters]

a score=88106
s chr3            94776933 4833 + 160039680 [encoded data, 5561 characters]
s HiC_scaffold_1 139709562 4838 - 233722169 [encoded data, 5561 characters]

a score=78271
s chr3            94782956 2236 + 160039680 AGCTGGCCTC--TGCCTGGAGCATGGGGTATACAAATAAATACTTTTTAAAGGCTGTATCCCAAACCAAGGCAGACTC---TCCCAGCAGCAGAAAGTTATGCCCGCGGACGCCTCACTCACAGCATTCTTTGTGCCTTA-GTAACA--GCTTCCTGGTCTGGACTCTCTGCCCTATTCGGTCCTGATCTTATAATCAGGTGTACCTAAACTGCCAGCTCTCAAGAATCACATGATTTATTCATGATAAAGTTCTGCCCTGTCAGGATATCTGCAGATCTTCCAGATC-AGGTCATGGAGCTCCTGTGTAGGCACAGCAAAGTGCCCAACCCTTTGGGCCAGAGGGCCAGACAATGCCTGGGTGCTACCCATGATTCCCCTAGGTTCCAAAGACCCCCTTCCCCCAGCCTCAATCACTATCCGTTCCACGACCTTTGGGTCAGGGGACA---GGACTGAGAGATCTTTAGGGTGGGTCAGAAAATAGAGCTCTAAATGATTCAACATGGAAAACCCGAAACCTACCCGCCTTC----AGTTACAGAGGACAGTGGGGTGGGGCCAAGAGAACAGGGCAGCTCTGAGGCCTTGCATAAGCTCTAGGCAGGTAAACAATGATCAAG--------ACCAACAATGTGAAGTCCAGGGCTTGGGCTCTCACCAGATGCCTGCCTGACCCT-CTTTTCCCTCCCTGGCACATGCCCAGGGCATTTCTCACCAACTGTACTCTGGGAAAAGCCCAGGACAGACGTTAATTCAGCGCCATCTGTCTGCCTCTGCCATTTCTGCCT--GAACACAGGGAGAAAGGACACTACACCTGTACCAGACAGCCACTTCTTCCTGAGTTACTCATTAGCCTGCCCTGCCCCAATTCCATCACCTCTGGCCCAGCCATACGCATCTGGCTTCCAACTAGGAGTGACAGGGTCCCTGGACTTCTAGCAGGAAGTAGGTGGGGGTTGGGGGTGGGGCGGTTTCAGGTGTATGGAGGAAGGGCTGATAGACACAGGGCCAGGCGGTATGCTGGATACTGAATAGATATGCTGGATACTGAATAACTGGAACATTTAGAAAGTAAAAAAACTGAaaaaaaaaaaa----------------------aagcaaaacaaacaac---aacaaaacaaaacaGC------------------------------------------------------------------------------------------AATCTCAGT---------------GGTAACAAGAAAGCAAAT----------------AAATGATCAAAAT---------------AAAAACGG----AACGCTCAGTGACATTATCATTTGATAAGAAGGC-----------TCCTTTAGGCC--------------CAAACAGAAC-------TCCCCAAGTGGACTCTAGACCA--TAGTCACTGAAAAAGCAGAAACCTGAGAGCCAAACTAGAGCTGCTTGGCCAGTGGGGGTAAAAAAACACAATGAAGAACTGGGCCCTTACAAACTCGCTGGACTGGTTTGAGAGGCAAAGAGAAGGGAGGGCCGGGAAGGCTACGTTGGAACCTTGCAAAGCAGACCAGAGAGGTTCC-CACCAA---AGGcagaggaacaagaccaagagtggaagctctgtcctgcctatatgccaaggccgaggctcctctggaggaggTGGCGGGAGGTGGGGAGGAGGAGACAGGAGTTACAGATGCACAAAGAACTTGG-----TGACAAGCCAGAGTGTGACAGGA--ACTTTGTCTCCCTCCACCACTCCCTCTCAAGTTCCCAAAGTGGCATTCCTGGTCTTCCACTTACCTCTGTCAGCTCCCAGGTCCTTGGTTCTCCCCTCCCTGGTACAAAGAGAAGCAGCTCTACCCCCCTCTTCTCCCACAAGGGTAAAGGCAGGCAAGCCAGCCTGAGAACCACAGGAAGCCAGAATCCTCTTAGAATCAGGCAAATCTCTGAATGGGCAGGCCCC-AGAGCAAGA-CCCATACTCCCAAATACCCAGGATGAA----------------AGGAACACGTAGGCAGCTTTGTCTACAAACATAGCGGTTGCTAATTATTTCCCAATTACAGCAACTGTCTTCAGACAGAGCATCAAAGGGGCCAAGCTAAGGTTGACTCT-GCTTCACCGCTGCCTACGGCAAGGAAATTCACCTCAGAAG--TTGTCTGGTGCCCAACGTATACCTCGTCTGTGGCCTGGGAATGTGGAGGTGTAAGTCCCCTAGTCTTTTGGTCTCCTAGGGAGTTCTGCCTATGTTTCTGCACCACTAGTAAGTACT-CTAGTCTATCAAAGA-------TCGTGAATCAAGGATGCCAACTAGGATTTCAGGGAATCAAGAGGATTCTGGGAAGGGTCAAGGAAATTAGCTGCACTTCCAGATCTCA-CCAGTGTCCCCCAATCTAGAACTAGAGAAAAA
s HiC_scaffold_1 139715435 2331 - 233722169 AGCTGACCCCAGTGCCTGGCCAATGGGAGATGAGAATACATACGTGTTGAAGATTGCATGCTGATCCTAGGTAGATTTGGACACCGGGACAAGGAAGATTTACCCAAGGATCCCTCCCAGCCATTTCTCTTT-TGCCTTAAGTGGCAAGGACTCTTGGTCTGTACTCCCTG----------TCATGATCTTAGAACCAGATGCGCCAAGACTGCCAGCTCTCTGAAGTCACATGATTTATTCATGCTGCAGCTCTACCCTGTCAAAACATCTACAGATCTTCCAGATCCAGGTCAAGCACTTCCCACTTAGACTCAGAAAAGTATACAGCCCCTTGGGTGCGAGGGCTAAGTTGTGAAGAGGTGGTATGAGTG--TTATCTGGATCCCAGTG------TCACTCCAGCTTTGATCAGCTTCGGTCCCAGGACTTGTGGGTCAGGGGCTATGAGGGCTAAGGAATCTTTACAGTGGGTCAGAGAGCAGATCTCTAAATGATTCAACATGCAAAACCCGAAACCTACCCGCCTTCCTTCAGTTACAGAGGACAGGTGGGCGGGGCCAAGGGAGCAGGGCAGCGCCAAAGTCTTGCATAAGCCCCAGGCAGGTAAACAGTGATCAGGCAGCAGGCAACCCCAGTGCTAGGT---AGGCCTGCGCGCTCACCAAAAGC-----TGACCCTGCTTTCCCATTCCTGGCCTATGTCCATGGCTCTTCTCACCAACTGCCCTGGAGGAAGAGACCAGGCCACA-ATTAATTCAGCTGTATCTGTTCGCCTCTGCCATTCCTGGCTTTGAAGATGGGAGG---GCACTCTACACCTGTATCAGACAGCCATTTCTTCCTGAGTTACTCATTAGCCTGCCCTGCCCCAATTTTATCACCTCTGGCCCACTCATATGTATCTAGCTTCCAACCAGGAGTAACA--ATTCCTGGACTCCTGGTAGGAAGTA-------------------------------------AGGAAGGATTGATACATAGAAAGCCAAGC--------------------AAGTTGCTAGATTCTAAATAACTGGCACATTTAGAAAATGGGAGAATTAGGAAAATACAGATTAGAACCTCCTTTgtgataataaggaaaacaaatgatcaaaacagaataggacaGCTCAGTGACCTTGAACACTATGTTCCCTTTTTCTCATAAAATTATAGATAAAAAGGTTTCTTTCCAGTTGGGGATGGTAATGtgtgcttgtgatcccagcactctgagaggctgaggcaagaggatggcaaattccagttagcctgagcaatttatcaagactctgtctcaaaataaaaaaactgtaaaaagggccaggga---tgtaattcaatgcaaaggtcttgggttcgATCTCCAAAACCACCAAAAAGAGTTTCAAGTAGAACACCACCTCCCCCATGTGGATTCCAGGCTAGGTCTACACAGAAAAAGCAGAAACCCGAGAGCCAGGCTAGAGCTGCTCAGCCAGTACAGG---AATAAAACAATGAAGAACTAGGTCCCTGCAAACTGGCTTGACTGGTTCGAGCCAAGAGAAAAAGGGAGGGCCAGAGAGAGGACAGTGGCAGCATGGAAAGCAGACCAGAGAAATTCCACACCAATGGAGACAGAGGGACAAGACCAGGAGCTGTGTCCTGGTCCACCTTGGATGCCAA-ACCAAAGCTCCTAATGAGGA----GTAGAAGATGGAAAAGGAAGTGCAAGAGGAGCAGATGCACCAAGAACCTGGCCAACTGACAGGCTGGCGTTTGACAGGAATACTTTGTTTTCCTCCACCACTTCCTCTCAAGTTCTCAAAACTGCATTCCTGATC-CACAATTACCTGGGCCA----------------------CCTCCCTAGCGTGAAGTGATGCagtccctcccctctcccttcccacAA-GCTAAGAGTacacaggccagcctgggaactgTAGGAAGCCAGAATCCTCT--GAGTCTGACAGATCTCTGGATTAGCAGGCCCCTAGAGCCAGACCCCCTTCACCCAAAtatccaggttaaaaaaaaagaggtgccCTAGGCAAGTGCAGGCAGC-TTGGCTACAAACGTAGCAGGTGCTAATTATTTTCCAATTACTACAACTTTCCTCAGGCAGGGCATCAAAGGGGCCAAGTTAAAGCTGGCTCTAGTTCCACAGCTGCCTAAGGCAAGAAAATCCACCTCAGAAATTTTGTCTGA-GCCCAGTGTGCACCTCTCATCTGGCCTGG----------------------------------------AGGAGTCCTGCCTAT-TTCCTGCACCGCTAG-GCCTACTGCCAGTCTAACAGGGATCTCGGGTCAGGAGTCAGGGTTGCCTGGCTAGCTTTCAGGGAATTACGAGGATTCCAGGCGACATCGAGG-AGTTGGTTACACTTCCAAACCTCACCCAGTGTGGCCTAATCTAAACCCTAAGAAGAA

a score=49598
s chr3            94785634 2115 + 160039680 AAACATTTTCAGCTAGTATGTGGGTCGAGGGATTTATGCTTCTCCATTCCCATTCCCCTCTCTTGTAGAATACACACAGT-----TCTTTCTAGAGGAAGAAGGAAAAAA----TTTCCCTGGCATGAAAGCAAAGAAAGA--------AACAGCCTTAAATAATCTCACACCTAGGAAAGAGATGGGTGCCCTCGTATTCTGACCTT-AGTGTCT-TACTGGCAACTGCTTTCACCTGTAGGCAAATGGTCAGGGAATGACCCCACACCTCAG---CATTTCCAAAGCCAGAAGGAGAGTGTCAGAGACCAGTAAGGACTGACGGGGGCGGGGAGGGGGTAGTTACCCCCAAAACCAGCACATGCGGATATCACCACTTCA--GTCTCTGAACCTCTGGCGGCACTTCCATTTGCTCCAATAGGATGAACCCTCCCCCGCCCCCATGCTGGTCTCCAAGAGAAATTCTGCCCCAAGGGCTGGCGCCTGACCTCCAGAG--ATTGTAGCGCTGAAATGCATGCATGCCCTGGGAATAACCTAACCCTCAGGTGCCTCACACCTG-GCACCTTCCCAGCCACTCGCTTCTGACACCGTGGAGTAGGGGTTAGCTCTT----AGCTCTGCCACCGCACTCTGACCGCCCTTCCTGCT-----AAACTCAGCACCTGTGCCC---AGGAGGAGGGCATTTGATGCCTCTACTCCGGCCCTCGAGCATACTCCTGAGGACCCACTCGCAT-CGCAGGTGTCCTCGCTCCAGA--CAGATTCACTCACCCCGGTCCAGATCAGTGCTCCCGGATTCACACACCCCGCAGGGGATCGCGCTCCGA---CCAGCCGAGCTACACGCGCTGCTGCAGCCCAGCCCCTCCGAGCTCTGAG-----CTCCCTCCTTTCCCCCGCCCACCAACCTGTTACTCCCCA--GGAGCTCCGCC-CCATTGGCCGTCACCTCCCGCCCCGCCTCACCCCTTCTTCTATTGGTCAGTTTCCCGCAAGGGGCGGAGCAGACACCGCGGGAACCCAGAACCGGGGTCCCCAGCCCGGTGGACGGGAGGGGCGG-TGGGGTCACGTGGACTGGTGGG---------GCGAGGGCGGGGC--ACCGGGGGACCTAAGAGGCCATTTTGGGGGC------GTCGGGGCTCTGCG----------GACCCGCGTAGCTTAG--------CGCCAGAGCATCCCCTGGGTTCTGTGGGAAGTGCCTTCCTCGTGCTCTTCTCAAAGCAAATCTCGGTTCACAGCCCTTTCTGCCCTTCATCTGCCTCCGCATAAGCCAGAATACAGTTCTGTCGCTTTCCGCAGAAAATTTC-TTCGTAGTCTCCCGATGTCAGCGCGTTCTGCATCTCTGCTCGCCTGCCTTATCGGCAATCCGAACCAAAATCTCAGTCGTGGATTCTCATCCTCGGGCTCCTGGCCTCCATAATCATTTT--------GCACCCTTTTTCTTTGGAAGATGTAATCACCCAATTTACATCACCCTAAAAATCATTTTCATTTTATCTC----CCTATGAAAATCTCGGCCAGAGCCGAGATCTTCattttcttttgttttgtacgcttcatctcaaacgcctataacagaggtcagcacatagttggctcttaataaaatgtgtagaatgaatgaCTTGGGAACCGAGTGCTGTAAATTTACACGCATCAGAATAAGCT--TTATAAGCAGAAAGGAGCTCAACTACAGATTGTAAATccatcttttctgaaagcctgtc-------aagtagg-gctt---ttggtcccactacaccgaaaagac--tctGGGGTGCTTTGCG---TGCAGACTGAGGCAGGTAACATTAAAGCTGGC-TCCTAGTGTCAATCGCTGAGGTATG--------TTAAAAGAAGATTGGCTTAGCTTACCTTGCTGGCCTCTGAATAGTTCTCTCCTTTATTTGTTCAGTAAATATTTATTGT-AATATATTTAGATTTGAAGAGGAATCTT--CCCTACAGCCAGCATTTCTGTGGCGTTAGC---TGGAGATCATTCCCTTCCCCTCCCCCAGCCTTCAGATGCTGGGCGTGGACCCTGGAGGGGAAAGTCCACCTACCTGTTCTGTAGCTGGGTTGCTAGGTCTCCGCATTCCATGAGAAGCCTTCTATGAGGGATACA--------------------GCCCTTAAGGAGGAAC---AAGgagggagggagagagagggagagagagggggagagagagcg
s HiC_scaffold_1 139717806 2103 - 233722169 AAGTATTTCCAG-TATTTTGCAGCTCCAGGGATCTACACTTC------CTCATATCCCTCTCCTGGAG------CGCAGTCTCTCTCTttcaagaggaagaaggaaaaaaagattctCCCTAGCAAAAATGCACAGGAAGACGGACAATGAAAGCCTTAAATAGTTTCATATCACGTCGAGGTGAGGGTGACTTCTCGTTCTGCCCTTCAATGTCTGCACTAGCAATTGCTTTCACCTGCAGGTGAACTGATGGAAAAAGGCTCCCTACCTTAGAGCCATCTCCGC-GCTAGAAGGGAGGTGTCAGTGGCGGATTCTTGTTGACCGCGGTGGGGCGGGGG-AGTGCCTCAGGAAAAGAGCACCTGCCAACGGCTCCCTTTTAATGTCTCCGAACCTCAGGCAGCAGTCGCCTTGGCAAAACTGGGAATAACTCCTTCCC-CTACCACCCTGGTCTCCAAGAGAAAGTCTGCTCCCAGGGCTGCCA--TGACCTCCAGAGATATCCTGGCCCTGAAACGCTTTCGTGCCCTGAGAATAGCCTTAGCCTCAGCTGGCCCATGCTGGTACCCCTCCTCCGCCACCGGCCT-GGCCACCTGAGCGTAGGGACCAGTTCTTAACCAGCTCTGCCACCCTCCCCAgacctcccctcctcctctctccaacACCGCACCTGTGCCCTGAAGGGGAAGAGCTCTGACTGCCTCACCTCTGTACCCCTGGGGTGCACCTGAGGGCCTTCCCACCTCCTCAGGTGCCCTGGCCTCGGGTCCCGGCT-ACTCACCCTAGCGAGGGGCGGCGCTCC--------------------GGGCTCGCGCGCCGGGCTCCCGCAGAGCTGCAGGCGCAGCTCCTGGCCCTCCCCTC--AGTACCGAGGCTCTCGCACCTCTTCCCCCCTCCTACCAACCTGTTACTCCTCGGCGCAGCTCCACCTCCATTGGCGGTTACTGCTCGCCCCGCCCTCCCAGACCACTGGTTGGTCCACTTCCAGCGAGGGGCGGGGCCGCCACCGTGGGGACCGCGACCCGGGGT-CGCAACAGGGTGGGCGCGAGGGGCGGACCGGGTCACGTGGGCCGGCGGACGGGGGCGCGCCAGGGCGGGGCTGACCGGG---CCCTGGAGGCCATTTTGCGGGCACCCCGGCTGGTGGTCTGCAGTCTCCCCCCGACCCAGGTATCCTGGGAGTCTCCCTCTCGTGCATCTTTCCGGCTGTGCTGGAG--GACAGCCTCGGGTCCCTCTGCAGG--AATCTCCGATC-CAGCCCTTCCCGGCCTTCGTCCGCCTCCGTGCGA-CCAGAGAGC--CTCCGTCACT----GCAGAGGGCGTCGCTGGTGCTCT-------------CGCCCCGCGATCTCACCTATTTTCCTTACCACCAACCC------------CTGTCTTGGATTCGCTTCCGC-ATCTCTTGTTCTCCACTATTGTTTTCCGTTCTGACACCTTTGCTTGCTAGTAGTCATCATTTTCTAGTTCA---------------TATTTTCCTTTCGTCTTGCGACCTATAATGAGCCCCATCTCCACCAGGGTCTCC--------------------------------TGCCTGCGACAGTGACCTGCACAGATTAGATGCTTAATAATGTTAGTTAAATGAATGA-----GAACCGAG-GATGTGAGTTTACATGCATTGGAATGACTTCATTCTAAACGGAAGGGGACTCAATCCCAGGTTGCAAATCTACCTTTCTTAAAAGTCCGCCTTTCCAGAGGTAGGCACATTGATTGGCCCCAGTCCCCAGAAAAAGCAGTCTGGGCTGCTTTGCAAACTACAGGCTGCATT--GAAACCTTGAGGCTGCCTTCCCGGTGTTAACGTTTGAGATACGAGATACGTATAAAAGGAGA----CTCAGTTTATGTTGCTGGGCCCTGAGTGGTTCTCTGGTTTATTTGTTGGACAAATGTTTATTGTGAACACATACAGGATTAAGAAGGCATCAGAACAATGCAGCCTGT---------GCGTTCACTCGTGGGGATCGGT--TTTTCCCTCCCCCATCCTCCAGAAACTAGGTGTGGGCCCTGGAGGGAAAAGTTCACCTGCC--------AGCTGAGTTGGGA-------ACATTCCA-GAGCAGGCTTCTGGGCGGGAACCAGAAAACCCAGAAATCCGTGGGCCCATGGGGAAGAACTGTAAAAAAAGGGTGAGGATAGGGTGGAGTGAGGAGAGGAGGAAGTG

a score=28549
s chr3            94820681 2408 + 160039680 AATACTGTTGCTAAAGCAGTGACCAAGTATGTCAGATTGTTTTATCTGGAGTACCTAACAGCATCCTGAATTAAGCACACAATGTCTCCTGACACTGTCAACCAGCAA---CATGAGGCTAATTTCTGC---------TACACTAAGACAGCAAGAACACCTTTTTTTTTTTTTTTTACAGGAAAGTAAAATATTCTAAATCTGAATG----------TAAATTACTTATCAGTAAGAAATTTTAAATTGATCTGGGT-------GGGCTACACCCAGCTGAACTAGTTGTAGAATCTTACAC-TTGGAAACAAGGGCATGTATGAGAA--------------ACCCAAATCCATCACCCACGG------TTATTACTTCCCGGGTGAT-GTTCTGGGGAGTGCAA-CTCCATTTGGGAAAATTGCCATCACACCAAAATCTTATTCTGGAGTCATAGGCGGGCAGACCACAGGGCAGGC----------------TAGCCTGGTCTGAGGGCCTGTCACGATGCAATTTGCATGCAAATTAGTTTGTGCGAGAAAG-------AGAAAAATCTATAGTCTACATATTG----------TTTTCCTCCA-AGTCACCTCATTTTCTGCACTCCTATT-----------------------------------------------------------------------------------------------------------------------GTGGTTCC---------GTCCACAC------AGTCTAAGGCTCGGAGAG---------CATGAAGTGGA--------AATGATAATAAGAAAAGACTGTCCTGGCAAAGCCCAGCGTCCTGGCA--------AAGCCC--------------AGG-----------CTGCAGATTCC---------------------CGCCGCCCTC-----------GCTGCCCCGCGCCCGGGTGCGGGGTCCACCGAGCAGCGCCAGGC------GGACTC------CAGCGC-TACCGTCCCGCCCCACCGGCCTTGGGCAGCGCCCCCACCGCAGGCACGTCAGAC-GCCCTCTTTTTCCCTGAAAACTTTCTAGACGGTAGGGACTATTTTCTTCCAATGTAACCTTCCACCAAACTGGAGGGAAAAGTTACCCGAGGCTGGAGCGGGTCTGGGGTTTGGGGGGAGCAAG-GCGGGGGAGGGGGACCCACGAGAGCCGGTCTTTG-AAAAAAAGGTGCTCTCTCTATTCTGCGAAGAGCCAAGAGTTGGGATTGTTGGGTTAATTATCAAATGTTCACGTTGATGCTGAACACTTAAGAT--ATGTTATAGAATATTGATGGAGGGTAGATTCCGCTAGACAAATGGT--TGTATTTAAGACTTGCAG--------------GCTTGACTTGAAAAGCTCTGCTTTCAAGTCCTTAGCTTTCACTGA---TAGG----GAAAGCCAGGTCTCCAAAGAATGGA--TTCTTGAATCCTTAAGACAAATGTCACATCTAAC-GCTGCCCTTTCAGGC--ATTGCTAAATTGTCTCCATATTGTGGGTGGGTACACCTGCAGGGATATTTAATGATTAAGAAACTCCATTGGACCTGCGTTTGTCAAAATGGGTTTCAAAATCAGCTTGATAAGGAGTGTTAGGGA-----------------AAGAGGGAGGCGGGGATAAAAGAAAG---------ATTACATATTTAGAATCAGTGCTTTTTCATGAAATCTGAATCGAGAAATCATGAAAATATGGAGTGAGTG--CTGTGTATGGAATCAAGATGGAGAATACAAT-----------AATAACAATAATAATtttttttgcagt--------------------gctgaccttgaaccaaggtccttacacattccagaca---------------------------agtgtc---------------ccatcctaaactgtatccccagcccTAGAATGTATGTCTGACTAAATTG------------CTGCTTTaaaaaaaaaaaaaaaaaaaaaaaaaaGTCTGAAAACCACGGCGCTACACAGTGCAGTT--AATTTTTTTAGGA-------------TGCTTAGATTTGAAAGGTTTGAA-------------------AAGACATCTAA------------------TTTATTTCTC---TGCTTAGA------------------CAGTGTTTCATTTTAAGAACAGTACAGACTTAATTA-TCTTGCCTATCGTCCTCCCATCTCAACATTTGCTCTGAGTATTTTGTGAATAATTTCTTTCTGT-----------------------------------------------------------------------------------------------AAAGCAATTATTTCAGTTAGGAAGGCTATAAATTGAAATAGGAAGGCATTTCTGCCACGCTCCCCACTTTCCTCTAGCTCTTCTTCTTTCACATCATTGGGCAATGGACACATTACAAA-----TGGATGCAAAGCCTGCACCCACCCCTCTACCCATGCTCTACCCATGCAGTCTCTGAGAAGCCTGA-GCTGCGATGTCATGGGATCAAATACCC---TGTGACTATATCTCAGTTGTTTTATTAGTATTATTACTTAGtttca----ttttattttattttattttatttttatttttttatttttttggtttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctcagcctcccg-agcgctgggattaaaggcgtgagccaccacgcc---cggcCCAtttta-------------tctttttgagacaaggtctcaa---gtagctcaggctagtctcaagtttgcta-aatatccaaggacgactttgaactcctgattctcaatgcttctgccttctgagtgctgcgaatacagctgtgtgccaccatgtctg
s HiC_scaffold_1 139748867 2888 - 233722169 AGTGCTATTTCTAATGAAGTTAACAAGTATATTAGAT-GTTTCACCTGTAGTTTCCAACAGTATCCCGAACTAAGCA-------TTTCCCACATGTATCAGCTAGGAGATGCGGGGGGCAAGATTCTGCACTAAAAACGACATAACAACAACGAAAATAC---TTAAAATGCATGTACCAATAAGGCAAAATTTCCTGAATATGAATAAGAAACTAAATAAATGATTTAGTACTAA-AATTTTTAAGACGGTCTGAATTAAACCTGGGTTACACT------------TGGTAGAATGTCACTCACTTGAAGCAGGGACAGAGATGAGaatgaagcaaacaaaaactCGAAGTCATCACCCATGGATACTTTCATCACTTACCAGGAGGTCGTTTTGAGG--TGCAGGCTTTGATCTACAAAATTACTACTGCATGAAAACCTTATTTTGATGCCAGGTGAGGGCAGAAGATAGAGCTTGCAGAAGATAGAGCTTCCGAGCCTGATCTGAGTGCCTATCCACATGTAATTGACACCTATAGTAATCTGACAGAGAAAAGGGGAGTAggaacatttgtattttaaagattgcattttaatttttttctctatagtT--CTCATTTCCTGCACTCCTACTTAACGCAGACTTGAGGTGAAGAGATCAGGACAAAAGAAAAGTATCAATTTGAAAGCAAGGCTCACCTTGAGCGTGATATTGCATGCCTTgtatcccagcactgtgggaggctgaggcaggtggttcTCAAATTCGAGTCCAGCCTGAGTAAGTCCGCGATTttgcaagacactgtctcaaaaataggatttaaaagaaaaataattaaaaggggCTG--AgaacgtagctcagtgtgaaggcgtCGGGTTCAATCCCCTAAACAACGGGGGAGGGGAAGATGCTCCTGGAGACTCCACCGCTCTGCGGGAACCGGGATCCCGCCCTCAGAGGTCGCCAGCAGCGAGGCCTCCGGGCGCGGGGTCGTGC-AGCAGCGCTGGGCCTAGCGGGACCCAGGACTCAGCGCCTGCACCCCCACCCGACCACCCT----------CCTTGCTGCA----CGTCCGACCGAGCGCTTTTCCCCTGAAAACTTTTTACACAGGAGGGACTATTTTCCTCCAATGTAACCTTCCACC-TACTGAAGGGAAAAGTTACCCGGGAAGGCGCCGGGCTCTGCCACTGGGGACCCCAAGAGCTGGGGGTGGAG-----CGGGG---GGTTTCCGTGCAAAGCGGCGCTC--------CGGCCCAGGCCGGCGTCCTGGAG--GCCAGGTTGGTTGTTCGGTG--CACGCTGGTGCTAAGTATTTAAGATGGAGGTTTTAAA--ATTGGTATGAAATAGATGCCACTTAATAAATGGTGCCGTCTTCAGACCTTGCAGTTTCTCCACTAGGTTCTTGAGTTA------TCTACCCTAGTCTTCCTAGTTtcagctggggctgggggcagAAAGGCAGGAC-CCAGAGGGTGACTTTTCCTCAGTCCTCAGG--------TAAATCTAACAGCTGTTCTTTTACGTTGATTGCTGGATTCGCTCTGTATTCTGGATGG--AATCCTGCAGAAATATTTCACCGTGAGGAAAACACACTAGAC---CATTTTTTAGACTGGGTGGCAAAATCAGTTTGACAAGGAGcgttaggaaagaaagaaaaaaaaaagaagaaaaaagctggaataaaagagaatagaaagataCTACATA-TGAGAATCAGGATTCTTTCCTGAAACCTGAATCATAAAA-----AGAATATGGAGTGTGTGTTCTGCATACGGAATAGAGATGTGGAATATACTTTGGGTTGTGGAATATACTTTTTACTTTGGGTTTCAgtcaaaaaaatctttgaaaaccaCTGCCctaagtcaggtgtggtggcgcactcctgtcatcccagccctctggaggctgaggcaggaggatctttgcgagttcaagaccagcctgagctacacagtgagctcaag-------gccagcctgaactgcatagagagaccctgtctcaaaaagaaaaaaaaaaaaaaaaaaaaa---aaaaaaaaaagatatatcaggtacaggtacaaactccctatgacaaatgtgatcattatgtatatctaaaatgtaccaataatgtaaaaagtaaaagtaaaacaaacaaaaaagccactGCCCTAGGCTTCTCTCTCACATGCTTAGAGTGGAAATAGTCtattcttattatttcattttaagaatagTGCAGACTTTATCCTTCTTGCTTGTCATTTCCTCATCTCAACATTTGCTCTTAAAAATTTGTGAAtaatttatctctcttttttttggtactgagaatcaaactcaggaccttgtgcttgccaggcaggcactcgtgccactgagccaaacccctgGCCCTAATTTGTGTGTTGAAAGCTATTATTTCAGTTAGGAAAATGATGAATTACAATAGGAAGGCAATTTTGCTAAGCTTCCCGTTTTGCTGT--CTCCCCTTCTTCCGTGGTGTCCTGGCTTGGACTCATTCCAAATGTGCTGAAGGCAAAGCCT----------------------------CTGGCAGAACCCGGGCAGCCTGCTGCTGCTGTATCCTGTAATAAAATACCCCAGTGGAACTCCA-AGCAgttgttgt-tttgtgttgaggattgaactcacaacctttgcactgaattacttacacttcagccctttttatttctcatttt--gagaccGGGT-------------CCTGGT-------AAACT----------GCCCAGCTGG---------------GTCGCCTACCCCTATCTCCTATAGGGCTGAGAAGACAGGTGTACATCACTgctgcttttaatttattttaaattttgatttcctttttttgagactgagGCCCAGTATGAAGTtgagtttggccttgaacttgctgttgtagctcaggatgaccttgaacttctGATCATC-TTCCTTTAGCCTGCCAAGTCAGGGGAAtacaggcacataccaccatCTCTG

a score=10125
s chr3            94831239  841 + 160039680 TATGTACACTACAAACCTCTGAACCTTGAGTCTGAAGGATTTC---ATCTCATCTA-----CAATGAT--TAATCTTCAAATCCTTCAAAAGAATGAGTTGGTAAATTATTTACTTTCCTTGGTTGATTTCTGGAAATAATTCATGACTATAATAAAGTGCAAATATTGCTAAATTTAAAAAGAATGTagcc--------------agtcagtg--------------gtggtgcacgcctttaatc----ccag--------cacttgggag---------gcagaggca---ggcagatttc--------------------------------tgagttcaaggccagcctggtctacagagtgagttct----------------aggaca--gccagggctac----acagagaaactctgtctcaaaaaacca----aaaacaaacaa----------------------------acaaa----caaacaaacaaacCCAAAACAACAACAAAAAAAATGTAACCTAGAAAA----------AGAGGAAAGTT-----ATCATTAAATTTTGCTCAGCAagccgggcg---tggtggtgcacgcctttaatcccagcacttgggag--gcagaggcaggcgga--tttctgagttcaa---------------------ggccagcatgg------tctacaaagtgag-------ttccaggacagccaggg----------ctacacagagaaaccctgtctcaaa----aaaccaaaaAAAATTTT-------------------TTG----------CTCAGCAGTCCATTATAAATATGAGCAAGTCAGATATCAAGTGTCTATAAAATAATCCAATTTATATTTCCATGAAGCTTTATAACATTAATTGAATTACTAGATAATCACACCTGGGCAACTCCATAGCAACAGC---------------ATAGGTTTGCTT-GTGGTATCTCTTAACTAATATTAAGATGA-----AGCTA--CCCAGTCATTATCACCTATGAAATCAGGCAGTAATTCACACGGAAATCTTGATGGCTGATGAAGTTGTTCTTGTGAATTTTT
s HiC_scaffold_1 139780829 1087 - 233722169 TATTTTTACCAGAAACCTTTAGAACTTTATTCTGAGGGATATCTCACTCTTATCTATAAGACAATGATATTAATCCTCACATACTTCAAAATTATGAATTGT--AATTATTTACTCTTCATAGTTGTGTTCTGGAAATTATTCATGACTATAATAAAATTCAAGTAttgctaaatttaaaaagaatgcatcccagagaaaggaggaagcttgtattatattttattttgtgattcatTATAATTATCAGAACCAAAGAGAATTCATTTaggaaaatgtaacagaaaagaCAATGGAAAAATTTTGACCATTGGAGTAACTCCCAAATTGAAAATATTGATTTCATGG--AGTCTTG------GAGTAAAATCATCACATTTGAGTGGAAAGGAGAATGGCATGGCTAACATGATAGGGAAACT--GTCATGAAATGTAGGTGTATAACAGATACCGCttacggcttgtgtctagatgttcccacaaagcctcatgcagtcaaaggtggggctttttcagaggtggttggatctagaacATGTTATTCTGGGATTAAggctgtgtgattactaaat------cagtgcACTGATTGCTTTGGCGTTGCCC-----TAAGCCCAAAGGTAGAGTATAacaggggcagaaagaagctgctaaggTCCCTCCTTTGCTTTGCTACATTTTGCccaccatgaactctttctccatTGTGCTACTTTTCTGTCATGCcagccttggaaccagttgactatgcactgaaacctt--tacaaactatgagccaaatacacttttccctctttaactttgtgtgttgggtgttttatctcagcaattag--aggaaagtaactaagacatatatcAAGTGTctataaaacaatataattt-tcttttcgtGAAGATTTATGACATCGATTTAATTCTTAGATAATCATACTTGACCAACTGAAAAGCAAAAACCTGAGAGAAATGAATATAACTTTGCTTTGGGGTGTCTCTTACATGACATTAATTTAATTCAAAGTTAAACTAAATCATTATCTCCTATGATATCATGCAGTAACTCACAGTAAAATATTGAAGACTGATGAGGTTgtccatgtatttcttt

a score=20126
s chr3            94831659 1244 + 160039680 gccgggcgtggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctg--agttcaaggccagcatggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaAAAATTTTTTGCTCAGCAGTCCATTATAAATATGAGCAAGTCAGATATCAAGTGTCTATAAAATAATCCAA-----TTTATATTTC----CATGAAGCTTTATAACATTAATTGAATTACTAGATAATCACACCTGGGCAAC-------------TCCATAGCAACAGCATAGGTTTGCTTGTGGTATCTCTTAACTAATATTAAGATGAAGCTACCCAGTCATTATCACCTATGAAATCAGGCAGTAATTC----ACACGGAAATCT------TGATGGCTGATG--------AAGTTGTTCTT---------GTGAATTTTTG------CCAAATACATTTTGAGG------CTAGAAC--------CCTTTAATTGCTTCTTGCTAAAATCTAATGAGGAATTTCCCTTTCTTTTCAAACCCAGTCTGCAAGTTTCTCTTGGTTTTCCTCTCCTCCTGAGCCT----------CTTGAATGTAGGGTGGTAGCAGATAATATTTGCAAAGGAAAGCCAGCCACAGCGTAGCAGCTTCTAAGCTCCTTATC-----TGTGACACTGCTCAGACA---ATCTCCCCTCGCCTTTTACTTCCTGATGCTCTCCCGTGGAGGTCGGCACCCCTCCCGTCCTCCTTTC-AGTCCTCCTTTCTG--CTCGCCCCAGTGCAGTAAGCTGTCGAGCTTTTCCA-CTGGGAGAGGTTCCGATGGTGAATTTTTTT--------TTTCCTACTACATTTTCCAAAACAAAATCTGTTTACTTTGCAGCTTCTACCGCCCTGAGGGTATTC--GGGAGGTTCAGGTGCGgttagtttgttgtttgtttgtttgtttgattgattgAAAAGAGCTGCCATTGTCCC-TCAAAGCCATCTTCTGCCTGGACTG----TGCGATCCCACCCTCCCCAGTCCCAACCACACTGCCCACAGCAACCGGTCCACCTCTCGCTGAGTCTCAGACTCAAG----TGACTGTGTATC----AGCACCGAGGCCACT----------TCTGCCTTTGAAGAC---TTGGGAGCGTTTGACATT--------------TCCAAGCAACAAGTGGCTTCAATTTTCAACCTGGAGCAGAAACTACAAGGCAAGAAAGCAAATAAGTGTCTGCATAAGTGG--------------------GCTGTCCAGTGGTGGGAAGCTCCA-TGGGAGCTGTCGTTAACCTTTAACTTCCTTTCCTAGAAACC---ATGGAAAGGAGTTA
s HiC_scaffold_1 139782038 1297 - 233722169 gcCGAGTGTgttggcatatgcctgtaatcccagcattcgggaggctgtggcaggaggattatagcaagtttaagatcagcctgggttacaaagtgagctcaaggtcagccttaactgcatagtgagaccctgtctcaaaaaaaaaaaaaatatatata--------------tatatatat---------atatat-atatatatatatattgatctGGGTGTGTTggtacttgggagcctgaggatGGAGGATTTTGAGTTTagtgccag---------cctggactacaggccaaaactgttttaaagaaaaaa-------------------------aacccatgtaAACACAAAGACATTCAATTGCTGAGagtggtggtgtgtgcctattatcccagcacttgggaggctacagcaggaggattggtgtgagttcaaggctagtctgcgctacacagtgaattcaaagccagcctgaatacaTATCAAgattctttctaaaaaaaaaatgacattcagTTGCTTCTTTTTGAAAGTTAATGAGAAACTTTTCATCCTTTAGAAACCCAGTCTGAAAACTTTCTCAAGCTTTTCTTATCCCTGGGACCTGGTTTTTCTACTTATGTATATGGaggtag-aaataatatttcaaaataaaattcagccA----------GTTTCTAAGATCCTCATTCTTTATTTGGCACTGGTCAGACACAGATCTTTGCTTGCCCTTTATTTCATGACAGTTCCCTGTCATGTTAG----CCATATGGTTCCCCTTTCCACTCATACATGATGACTTCACTCTGAGACGCCACGCAATCAATCTTTTCAGTCTGAGAGTTGCTCTGGTGGTGAAAATTTCTCCACTgtcttttctcttacattttgtAAAACAAGATCTCTTTAATTCTGAGCTTCAACCACTCGGAGTGTGTTAAAGGAGGGAGTAGG------------gatgtctgcttttt---------------aaaaacctgatatTTTCCCCTTGAAGTGGCTTTCTTCCTGGAGTGGCCTCGGGATCTTATCTACCTCATCCTCAGCCACAGTTCCCACA---------CGAGCTCATACTGA-TCCCGAAATGGAGAATACGTTTTTGTGTCTAAAACCACAGAAGGCACCCACAATTCACTCTGCCTTCGAAGACATGTTGAAATCATTTGTCTCCCTGCCTTGGCATGATCTAAGCTACAAGTGGTTTCAGTTTTCAACTCGTGGCAGAAACCATAAGCTAAGAAAGCAAACAAGCATTTTCATTAACTGTAGAAAAGAAATGCTCTTCTGCTCCCCA----TGCAAAGCCCAATTTGGGAATGTCATTGACCTTTGATATTCTTTCTTAGGAACCCAGATGGAAAGGATTCA

a score=36473
s chr3            94834772 2939 + 160039680 TATAGTCCCTTTCGAATCACTGTTCTAGTGCCCTGAAGTAG-------TAATTTACAGCTTATTCTTGTTACAAAATTCCTTTCCCCA---------CCAGCTATCCATCACTGAACCACTCATCAGTTCTGAGTACTGTG----------------GGGTTCTACTCCAT---------GCCTGCTGATCCCTGCCCACCCATTCCTCCA--GCTGCCTCCAGCCTTAGGAAAGCTAAGCCATTTTTTACATTCAGCATGGTGTTCTTCCATTTTTTTTT-TCTTTATGGAAGTTATAGTGCCACCACTCGCACAGTTTTGTTTGCCATCATGAGTTGAAAGTGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGTGAAGACATGGcctcaccactgccaccctggtcca-----caatcatctttcaccaggattaatgtagtaatatcctaacttgactccctccctgtggctgccttttctcttactagttacccaaccccttccacacacagctggagagatctttaaaagcaaaag----gtcatttctcttaaggggttgacatcctctagtggttttgctttcattAGAACTAAGCCCTGAACTCTGCTTCTTTCTTTTCAGACTTTTGTCCA--CATTACTTTACCA--GGGCTTTCTCTAACAACTCCTCATAAAATACACATTTCTCCA-TCATTCCCTGTACC---------ATACTTCCAGCCTTGAATCCTGCCCATTGCCAAAGCACTTAGCA---------AAGCATGGATTTATTTATGAAACACTTGGTAGTTTAC-----------GTTTCTAAGAAGCAGATAAGCCTCCGGTCTCAGAA-----GTCACCAA---------------TCTGGTCAtcttgaggtgcccaatctcagaacgtagtttttctgactagagggagcaaaggtcac-----------ttgggaacattctgaccaacagc-ccaactgt---ggttcaatccaatagg-atcaacttgcaaacatgt--gGAAGCTTTTGAGGTAACTTTATCACCAACCA--------------GAAcaagtaagctcagcca-atcacttttctgaatcacaagagatgataaagacatcattttacaccactaaattttgggactgcttgctaTTTACTGTTAACTGATGGGAGAGTTTTAGTGTGTGTATATTTGTTGTTTCTTCCCTGGTAGAATGTAA--------GTTTCACATGCACAGGGGTTTGTGGTTTTGTTTTCCA-------------------------------------------------------------------------ACATTTTCA-----------------TGttt-----------taattttaaaaattaaatttatCATTTCTATGGTTTTAATCATAATATTATATATTGTGGGAGGGAGT------------------------------TATAGGgtgtgtgtttgagtatagatgcctgtcaagccagaaga----------gggc------------------------------actgtatct--------ctcca--------------------ctggagttggaggaacaggc---------------agttatgagcagagttcagggtgctgggaa--ctgaattatgacccagaggagcaatgacagctc----------ttatctactgaggcatctcta---cagccccGGGACtttattactgtattcctagcaccaagaacagtgcctgaaacatgaaaaatatacaataaatattggatgaaataatgGCGTATCAAATGTCT----------TCAGTAGGATGTGATTATGGTTGTTGTGGTCAACAAAACGTGGTGTAATTTGATGA-GATAT-----CTTTCGC-------------TGGATGAAAGTAACT--AGCTGGCAGTTTGGAGAATATATGCAAAGGAATAAGTATGGCTCTGGATCTACCCATTCCTGTACCA-----AGCAACTTTGTTTAGAACTTGGTTTGGAGCAAGTATCAATATATGGCTTAAAGATCATTCTCAAAAACCCAAGGGAAATACTG-CATTTTATCATCTGAGGACATAATGAAGGACAAAA---CTTAGCTACC-AGAAGTTAGTTTTTGTTTGTAT----GAAAAGTGG-TAGATAATCTTGAATGGACTAATCAATTTACTTGAGCCAATCCAACGGGGCCATGGAATCTATGGTTTCTGAGATTGGAGATCTCTGCTGAGTC-TATGCACAATGGTTTCAAAAGCAGTTCCCGCCGGTAGAATGACCTTAATAATCACGAGGTTTCTCCCCCAGAATCCAGAAGGGCTTGATGATAAAATAGGTTT-TAAAAACAATTCTTTagctaggtgtggtggtgattcctttagttttcagtacccaggaagcagagactcgtagatctctgagtttgagaccagcctgccctatct-ggtgtgtttcaggacagctagggctctgtagaaagtccctgtttcaaataaac-----aaaCAAACAAGCAGAAAAACAAAACAAAACCTCAAAACCAAAAAAGTATTTCA------------TTTATACA------AGGCACACTGTCACAGAAGGTTACTCAGACAAGTGTCTCTTAAGGTAGAGTG----TTATCTTGCTT------TTTGTTGCAACAACAGTTGTTGGTGCCATTGGGACTCACCATTTTGCTTGTGGCATGAAGTTTTTCTCTTGAATTGGTAATAAACCTTGAATAGAAAGTAGGGAGAGTGC--AAATTTGTCTGGAAAGTCTAAGAAAGTATATTATGAGATATTTTCTTTGGTAGTGTCATTTTTCTCAGCAAAATTTGGAAACTGTTTGTGAAGCTAATTATTCTTTTCTCCATGAAA-----GCTT---------------------------------TTTCTTTATTTATTTATTTGCAGGCCCAGACAAACTTGACTAGAAAAGAAGCCCGGACAAGGGTTAGGATGAGCG-ATGACGTAGCGTACTAGCCAGCCAATTGAAAGAGCACGAGAAGGGGAGGGCGGAAGTGACGAGAGGTATCCCTCCGCGGGGCGAGAGGGTCGGTGGGGGGAGTCGGCGTTTCTCTCCCCCGCGCCAGCTCCCATACACGGAGCCACATTCCTTGGCCCCCCCACCCCCTCCCTCGGG-GCCCCCCGCCCCCCTCGGG--AAAAAAATCCACCCC--AATCACTCGAACCC--GAGGGAGGCTTCCTTTC--ACCCTCGGGGAGAGGAGCTTTCAACGGTTccctcttccccgtctcccccccgaa--ccccggtcccctcccctgctcccaccccctactcccggcgccgGGTGCAAGGTCC-CTTTAAGGCGACGGCACCTTCCTCGGGT
s HiC_scaffold_1 139783687 3342 - 233722169 TGTAGTTCTTTTTGAAATCCTGTTCTAGTGCTGTAAGGTGGCAGAGTTTACTTCAAATTTTATACCTCCTCTGAAATATCTGTGCATATCATTTCTTCCAGCTCTAAAATATTCAACTGTTCATCAGTTCTCTCTGTGGTGACACCGTTACCTCACAGTGCCCCGTTCCATCTCCTTACTGCCTGTTGATCTTT----ACTCATTTCTTCAAAGCTGCCTTTAGACCCTGTAAAGCC---CCATTTTTTAGATTCATtgcaatatttttccttttttttgtgtgtatgtggcaGGTTTAGCACCAGCAC-------ATTTTGTTACCAAATATGGGTCAAAAGTATTTCCCAGGACACGAACTAAATGACAAGAAAATAGTGTACAGAggtagtacttgggaggctgaggcaggaggatcaccaggggttcaaggccagtctgtactgcatgagttcagggccagccttaaactacatagtgagattctgtctcaacacccccacctccaccaaaaaaggaaaaaagaaaattaaagtagcAGCTTCACCACTCCTACCCTGGGTCAGGCTATGGTCATCTT--ATTTGGATTATTGCAGTGCTGTCCTGAC----AGCTCTCTCTGCATCTGCCCTC-CTTGCATCAGTTATCC-------TCCACAAGAAGTCAGAGTGATCTTGAAAAAGGTCGGTCATGTCATCACTCTT--TGCTTCCAAATCTTCCAGcgacttccttttcatt----------------------------ttcttccagtttttgtcAAAATATCACTTAATGATGAGGCTGTATTCAATCTCACAAAGTAATATAGCAACTTCCCCACTCCTCCCCTGCACCGGTCTCCCAATTCCTCTAGCCT---ACCTTTTCCCTT-CCATAGCACCTATCACCATGTGACAGACATG--TTTATCTATAGAACAAGTGGCAGATCACAAAGTGAGCCCGGAACTGTGGTGAAAACGATGCTGTGACCTGTGAGTCTAGGTCACAAAAAGCCGTAAGTCTCTGCTGGTCTGTTTGGGGCACTCACTTTTGGAACTCAGCCA--CTGATATGAGGAAGCACCGGCCACGGGAGAGGCCATTGTGAACATTTTGGCCAACAGCTCCAACTGTTGTGGCCCAAGTCAATAGTTAACACCTATCAGACACATAAGGAACTTTTTGAGGTAACTTCAGCACCATCCATTGCACAAAAGTGAGAACCCTTTAGCTTAGCCTTATCACCTCCTGGAATCATGAGAggcaataaa---attatttacagCCAATGAATTTTGGAGCTGTTTGTTATGTAATGATAG----TGGTACAATTTATTTCTATCTGAGTTCTAtgtctccttcccttttgagTTCAAcgattattatttc-------------tttgttgttgtatTCTCAGGATCTAGAACAGTGCCTGGTAGACAAATACACAACAAATGTTgactgaatgaatggatgaatgaacgCATGATACATTTTCAGTATGATATGCAGAAAGTGTTTGCTCAACTGAATAGTATGCTGGGTTAGACCT--CACTGGCTGAGTGTAAATCTCCATATTACA----GTGGGGGAAAATATGTGGGATCCTTCTGAGGTAAATAACATACATAACATGTatgactatatataaatatataataaattataataatcacTTCCAGGACCATATAAAATAAGGTTAAAGTTTCACCAAGACTTTTTCTTTTGGTGACTCCATAATCCTTCTATGAGCTTTTCTAGGTCTGGTTTAAAAGGCTCCAGAAGTGTTGTAGCTCATgaacataatcccag-cacttggaaggctgagaca------ggaagatcattgcaagttcaagaccaacttgggctacaaagtgagctcaaggccagcct--gaactgcat-agtgagaacctgtc-tcaaaaagaccaaaccaaacaaaacaagtaTGT--TCAGAAAGAGAAGTGATAATGA------AGATATCTCTAAGAAAAATTAGTTGGAAACACTTA-AGTTtttggg------aaaaaagaatgaaaatggatGGTGATGTGTGTACTtctgtgtacatacacacatacatgagAACAATTTTGAATGCCTATTAGACTAGTG-ATGTAGAG-AATAAATATGGTGCTG-ATCTCCTCATTCTTGTACCACGTAGAGCACCTTGATTTAGAATTTTGTTTGGAATAAATATC--------------------------------CacgaaaaatattaataatttatcatctCAGGAGACAACAAAGAGCAAAATTTCTTAGTTCTTTGGAggttagtttttgtttgtgtcgAGGGGTAGTGGCTGGGCAGTCTACAAT----TAACCAGTTTCTTTGAG-------------GCC-------------TTTGCTGAACTGAACAACACAGGCATGTGGTATTCACACTGGTCTCAAA-GCAGTTCTC---------------------ATCACaaagccctttt-------------------------taaaatatatatatatatatatatatatatatatatat-------atatatttattttt--gttgctagGGAA----------TGAACCCAGGAGTT-------------CCCTAGCTAGGCATTTTACCTGTAAACTA-----CTGTACATCTTCACTCCTAGGAAGAATCTTGGAAAGCAATCATGTGCAAAGACT--------TTCCAGAAGCAATAAAGGGATTGACGGTAAATATGGTTTACCAAGTTCTTAAGACCACTGCCACA--AGGCTGCTTGGCCAAGTGACCGTCAAAGAAGAGTGAGTGGGGTCTTGCTTCACTGCTGTGTTCCAATGGCAATTG---ATTTTACTGGGCCTCATCACCCGGCCTATGACATTAAGGTCTCTTGTTCAGGTG----TAAGCCTTGAGTGGAAAGTGGGGAGACTCCCAAGATTTCCCTGGAAAATC-----AAGTACACTGGGGACTATTTTctttggaaatcccatttatctcaccaaaatttaaatattgcttcTGAagctaattattattttttccatttagtatttgcttatttatttatttatttatttatttatttatttatttatttatttatttatctgcagAACCAGACAAACTTGACTAGAAAAGAAGCCCGGGCAGGGGTTAGGATGAGCCCATGACGTGTTACGCGCTCCAGCCAATTGAAAGGCCGAGAAAGGGGGAGGGCGGAAGTGACGAATCGTATCCCTCCGCGGGGCGAGAGGGTCGGTGGGGGGAGTCGGCGTCTCTCTCCCCCGCGCCAGCTCCCGTACACGGAGCCGCATTCCTTGGCCCCCCCACCCCCTCCCTCGGGCCCCCCCCGCCCCCCtcgggaaaaaaaaatccatcccaAAACCACTCGAAACCCGGAGGCAGGTTTCCTTTTTGACCTTCGGGAAATCAAGCGTCCAAGGTTTGTTCCTTCTTCGTCATCCGCCTGAAAGCCCTTGTCCCTCTACCAATTCGAAGACTCTTCTGCCTTTGATGGCGGCTGGTCCCACTTAAAAGTGAAGGGGCTTACCTTTggt

a score=25032
s chr3            94838075 1451 + 160039680 GTCCACAGGCACGC-CGGGCGCGAGCGTCC--CGGAGGAGTgggcggcgcgggc---ggcggcggTCACCGGGGATGGGGGGGAGTTTGCAGAGGCGCGGGCACGCGGGGCCGCAGCTGCGGAGCGGTGGAGCCCGGGGTTCCCGCCGCCCCCACGCGCGGAGGCGTGAG-CGCTGGTTTTGAGCGGGAGGAGGGAAG-CGAGTGGCTGCCCCGCCGGTCCCCTGTGTTATGTAATCCC-GCTCCGTCTGCGAGGACATCCCAAGCCTCTGCAGCTAGTTGAGGAAGTCTCCTCCCTCGGCCCCCAAATTTATGCATGGATGGCGCTGTGATTTACAAAATGGAATGGGGCAGAA-----TCTATTTTCTGGTGATTATGTCCTGCCGCTGTAGGCGCCATATTTAGCCCAAGGACTATTTTCTTTAGATTTTTCAACACCTTCTGAAAAAGAGTAATGTCATCAAGCCACCTGCTTTCCCTTGTGTCTGCCTATGGTCCTGGTTTCCTCTCCTG--AGTTGTGGAATTCTTGCAAAGGGTCAATACCACTGCACATTTCTC-----ACTTATCTTAAGCCTTTAGTAAG--------AGAGCTGAG----AGTCTTTTTGGCCTTTTCGTTCTCTAGGAAGACATGGAGATTGAATTGTAATGTCTTTTC----AACAGTGCAGAGA-TAGCCTTTTC--TCCACA---CCTGTTCACCTCCTTTTGTAGCGCAAAACGCCACAAAGATGAGGTTTTA-----AAAGCAGTTTCCCCAGATGAAGCGAGAAAGGAGTAAGGCAG--------CTGTTC-CTCTTGGACGGTGACAAGGCAGTTGGACCCCGTCCGTGTTCTGGAAGGAGGAAATTGGGATGACTTCT--TTATTGTCGTCA------TTCTTAACTTTAGGGTGCATTCAAGCATTTTGGAGGCTATTAAACGTGAAGTTTAAGGACTTTGTGCCTAAAAGGTTTTTTTTTTTTTTTTTTGGAGGGTGGGGTGGAGTGGAGGGCTAGTATCATCTTTATCTACACTGGGCAACTAAGATAATCAGTATATTAAAGA----GTATTGCTAATGTGGGAAGGTGATCAAAATATAGTGTTAAAACAATT-------AGATTGTGCCCTCGATTTCTGTCCCCTTCCCTGTATTGTCAGGGTATGTCAAACGGAAATAAAAATAGAAAGGACTTGGAGGAGAACAGGTGGGCTTAAGAGTTGCCACTCCCATCTTGACTAGGTT--CTAATCTAGGAA-----AGCAGTTTACCCATTGTGGTTAGCTGAG-----CCTGGAGTACA-CCTCAGCACCATTCAAGGGCGTCTTGAGACCTTAAGAATTAT-GAGTAAAGCTTTTTGTGTCTCCCATGACTTTTGCAGTGA--------------TGATGTGTAAAAGCAA------------------------------------------------GCCCCTGATTTCGGTGTGCTTACCTGAGAATGGCCTTGATGGAGCAATGGCAGCATGAAACTAGCATGAAATTGTTACGTTTCAGCTTTGGAATATATCTTT--AGTTTTTAAGAATCT
s HiC_scaffold_1 139787453 1432 - 233722169 GCCCAAAGGAACACACCGGCGAGAGGGTCCTCCCTAGGGGTGGGCGGCGCGGGCCCGGGCCGCAGTCAGCTGGGG---------------AAAGGGGCGGGCG-GCGGGGTGGCGG-------GCGGCTG-GCGTGGGGTTCCCGCC---CCGGCTCGGGATGGCGCGGGGCGCTCGTTTTGATCGGCGGGAGGAAAAATGAGTGATTGCTTAGCCGATCCCTTGTGTTATGTAATCCCTGCTCCGCCTCTCAGTACATCACTG--CCTTGCAGCTAGTTTACAAAGTCTCCTCCCTCCGCCCCTAAATTTCTTCGGGGATGGAGCATTGATTTATAAAAGGGGATGGGGCAGAGAATCTTCTGGTTTCTCGTGATTGTGCCCTGCCGCGGTGGGCGCCATGTTTATACCAGGAACTAT----GTTAGATTCCT-GGCCCCTAGTGAAAAGGAGTAATGTCAGTGAATcacctgcttttcctcttttctaaatGTTGACTCGATTTTCACTCTCGCCAGACATGGGATTCCTTCACACAGTTAACA-CACTGCTCAGTTCTCAACTTACTCGTTTTTCACGTTTACTCAGAAATAGGTAGAGCTGTGTTGTAAATCGTTTGGCCCAATCATGCTCTATATGAAGATTGAGATGCAGTTATATTGTATTATCTCAGGATAGTGCAGACAGTAGCAGTCCCATTCCATAAAGTTGGTTGGTATCCT----TAGCtcgaaa----aaaaaaatggggctttACTTTTAAAGGAATTTTCTCTGATGAAG-GAGaaacataaacaacagtgaaCTTTCCATTCACCCCTGGGC-----CTGGGAGCTTGGA--CTGTCC-----------------AATTGGAGCTACTTATGGTTCTTAACTTCATAATGGTTTTCGACTTTAGAGTGCATAAAGAGACTTTGGAGATTGTTATGCTTGTAGCTT---------------------------------------------TGGGCTGCAACTGATG----------------------CTG-------AAGGTAACCAAGACTTTAAAAATCACGTATTGGGTTCATAGAAAGCTGGTCTAAATA---TGCTGAAAGAGTTAAATGGCAGGTTGTgcccttgatttttttccc---ccttacaTTGGTGGTGTATCTCAAAAGGAGCCAACAAAAG--AGTATTAGCAT--GAACAGG---------GTTTTGGTAGACTTTTCATTAGTGGAATGAATAATCTAGGAATTCCTAGCAGTTCACAAATTGTGGCCAGCTGATCGATCCCATGGGCCCATCCTCAAGACTCCCCA---GAATCTTGAGGTTGTAACCATTTCAAAATACAGTAATAAGACTCCCCCATCCCCTTTTTATTAAACTTACATTTTTGCTGATGGTCAGAAGTAATGCTGGCGAGCTACTACTGGTAGTGCCTTAGCAAGAAGCAAGGTTGTGGCGCCAGACCCTACTGTGCTTACTTGAAAATGTTCTTGAGGAAGCAGTAAAAGC----TATTAGT-----ATTATTAAATCTTAGCTTTTGACTacgtgtttaaaatttttaagaatct

a score=16404
s chr3            94853878 284 + 160039680 TGTTTCATATTTAGTATAAAATTATTTCTCCAATTCT-AGGTCAGTATCTTACTAAT-TTTATTTTTTTGTAGCATGGCGGACACCGACCTGTTTATGGAATGTGAGGAGGAGGAACTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTACAATTCTGTGGATAAAACTACTTCCGGTAA---------CTAAAGCTCCTTTGTTCTTAG---GTTGTTTACATTAATTACATTGA-----------ATTATGAAGAATATGTGATACAAAGAATTTAAGAATCCAG
s HiC_scaffold_1 139808407 306 - 233722169 TGATTCATATTTTCTATGAAACTGT--CTCCAATTCTTAGGTCAGTATCTTACTAAAACTTATTTTCTTGTAGCATGGCGGACACCGACTTGTTTATGGAATGTGAGGAGGAAGAGCTGGAGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAGGATTATAATTCCGTGGATAAAACTACCACAGGTAACAACATAACCTCAAGTTGTTTCTATCTTAGGTTGttgtttaaattaattaaattgaatggtgTATTCATTAAGAAAAGTATGAGGTAGAGGGGA-GGAAGAATCTAG

a score=29551
s chr3            94855810 805 + 160039680 gtttgtcagggta-gttatcagagc--aacagaagaagatagaaagacCAAAGAAATTG-------TGTCTAAGTGGTAGTCTAAGAGACAATTAGGAGGACAAATCATGTCAACAGTTAGAATTTTGAATGAAGTTAGAAACTTTTTTTGGCTGTCAAAACACAAAGGAATGAGAGGA-----------AGCAGAATCCTTTAGTGTCACCTGTCCCTGTCTCCAAGTGACTATGCCTTCCCTTCCCCACAGTTTCTGTGAGCCAGCAGCCAGTCTCAGCTCCAGTGCCCATTGCTGCCCATGCTTCTGTTGCTGGGCACCTCTCTACATCCACTACTGTTAGTAACAGTGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAATTGCCAACAACAATGGTAAGTGGGATTATTGGGAAA-GCATTCTGGGATAGAGGCATGAGAGAATAAAATTGACCTGGAAGGCAGCTGTCCCTGGTAGTGCTATGGCTGTGCTAGCCGGAG-GCGTCTTTAGGAACTGTTTGCGT----------GGAAGGAACACTGCAGATGATGCTGTTC---TTCAGTCAGTGCAGGACT--------------GAGTCA--GGTCAGCAGG-----------------TTCCAGAAGA-------CGAGCTCAGCATTGCTGACTGTCCTAGAGATCTGGGGCTATTGGTTGGTTTTGTTTGCATGCACACACAGATGCTCTTTAAATCAGAGGAGTCCTGTTCATTCGGTTAAGTTTTTTTACAGGTAGCTTTGTGTTGTAAATTTGCTTTGAGAGATTGA-TTGGTTGTTGGCTCCTTCGTATTAAGGAGA------AAAGTTGTT-TCTACTAGAATGAAATGG
s HiC_scaffold_1 139809298 845 - 233722169 GTTCGTTGGGGTCTGTTACCTAAGTTAACCAGGAAATGTGAGA-----CATAGAAAATGCAAGACTTGTCTAAGTGGTGGACTAAGTGACAATTAGGTG---AAATCAGATGAACAGTTGGATTTATGAATGAAATAGGAAA--TTTTTGGGCTATAGAGACCCATAACAATATGAAAAGGGAAGATCAGAGCAGTATCCTTTAGTGTCATCTATCCCTGTCTCCAAGTGACTGTACCTCCCCTTCCCCACAGtttctgtgagccagcagcaggtCTCGGCTCCAGTGCCCATCGCTGCCCATGCTTCTGTTGCTGGGCACCTCTCTACATCCACCACCGTTAGTAGCAGCGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAATTGCCAACAACAATGGTAAGTGGGATTATTGGAAaattcttcctgggctagaggggtgagaaaattaaa---aatttagggaCAGTTA-----GGAACTGATGTGGTTGTACTTGTCGGAGAGTGACTTTTAGTAAGTAATACGTTCTTTGATAAGGAGGTGGTTCTGTAGGTGGCACTGTTCCTTTTAAGTTGGTGCTGAATTGTTGCTGATGTTTCGAGTTAGGGGCTAGCAGAGTATTGCTGCTGATAATTTCTAGGAGAGAAAATGTAAACCCAACGTCCCTAACTGTTGGTTAGATattgg----ttggttgtttttgttt--------------attatttgttaATTAGAAAGGTCCTGTTTGACAGG---AATTTTCCCAT-TGCAGCTTTGCTCTGT--ATTTTCCCTGGCAGGTTCATTTGGTTGTTGGTTCCTGGGTA--AAGAAGATAGAGTAGGATTGTTATTCATCTGAAGGAAATGG

a score=28644
s chr3            94860374 867 + 160039680 AAAGTTTAAAAGAGGATTAGCTAACAACAAATTACCTTCTTACAAAAAGATTTTACTTAAAATATGGAAAG--TCTTCCCTTTTTGGCTCTGCTGATTCG----GGGGAGAGAAGTATGTGGTAACTTAGCTCATTAGTGTGAAGCTAGGAACTGG------------------------------TGCCTTTCAGCCTTAGGCAAGGCATGGGTGGGTTAGTGAA---CTACCCTGACTCACTTGTCTTG-TGTTAGCTGTAGAGTTGGGTGACGCTTAAGTTGGAGTGAGTTTGGTGCCGT--AAGCTGAGGTGAGTAGTAGCAGTTAAATGGTTTTGATATCTGAGACACTGTTTCTTAGCTGAAATAATAATGTTTCTTATTAATACAAATTTAG------CAATGTTTCTAACATCCCTTTCTTGTTCTGTTTTCCTTTGTGTTGTCTGCCTTTTACCCTTTAGCTGGTAATACTTTGGTCCAGCAAGGTGGACAGCCACTCATCCTCACCCAAAACCCAGCACCAGGTCTGGGAACAATGGTTACTCAACCAGTATTGAGACCTGTCCAGGTCATGCAGAATGCCAATCATGTGACTAGCTCCCCTGTGGCCTCACAACCTATCTTCATCACTACCCAGGTGAGTGGGACTTTGAATTCTAGGCCTGGTAGGGGAGA------TAGACTGTGAGCCTCTAGAGGCTTAGCC---TTGGACAGGGTCTTCATCACTGTTAGAGTTCTGTCTGTTGAACTGAGTTTCTC-TGGACTGTTTCACGG---GATCCTGCC---TATGAAGTGCCCAGCATAGCATCATGGCTACATGATATTT---TCATACACCTGAGAGGTCTGTTGAGTTGATTCAAGTCTGAACAGAAATCATCATTGGGAAACTTAAAATTAGAAAGGCTT--CACTCAg
s HiC_scaffold_1 139818884 869 - 233722169 aaagttttaagaaGAATTAGTTAACAGCATATTACATTCTTTAAGAATAAGTTTTCTTAAAACATGGAAAGAGTTTTTTTTCCCTTGTTCTGCTGATTTGTTGTGGGGAGATCAG---GTGATCCCTTAAATCATCAGT------CAAGGTAATGGAAACATACATAGAAGTCTTACTACTTAATGTGTCCTTCATCCT-AAAAGAGATATGGGTAAGATAATAGTTCTCTATTCCAACCCATCTGTTTTTCTATTAGTTGTAGATTGGGGTGAAGCTTAAGTTTTTG-ATGTTCAGTAACATTAAACCTGAGGTGAGTGGCAG-ACTTAGATA-TTTTGATATCTGAGGTAGCATTTCTTATTTAAGACcatgatttttctttgtaa----aatttaggATTGACAGTGTTTCAAgcattccttcttcttttt---------------------cttttttccttcagctGGCAATCCTTTGGTCCAGCAAGGTGGACAGCCACTCATTCTGACCCAGAATCCAGCGCCAGGTTTGGGCACAATGGTTACTCAACCAGTTTTGAGGCCTGTTCAGGTCATGCAGAATGCCAATCATGTGACCAGTTCCCCTGTGGCCTCACAGCCAATATTCATCACTACACAGGTGAGTAGGACTCTGAATCCTGAAACTGATAGGGAAAAACAGTGAAGATTGT--ACATTAGGATGTTTGGTTTAGTTAAAAATGATTCT-----------GAGTCTTGCCTTTTGAACTGGGTTTCCCATTCACTGTTTTGTAATTTGATGCTGACCTTTGTGGAAAGCCTAGCATAGAATCAGGGCTGGGTGATTTTCTTGTCACACCCTTAAGAGATTTAT------------GTTCTGTGCACAAGTT----CCTGGAAAGCTGGGATTAGGAAGCCTTAACACTTAG

a score=68922
s chr3            94862378 2461 + 160039680 TAGTTGATCTCTATATTAAAGGTCATTTTTCTTTTTAATTCAGGGATTTCCTGTAAGGAATGTTCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGCTGAACGTACAGCAAGGCCAAACAGTTAGACCAATTACATTGGTCCCAGGTAAGGAGATACTTATAACC-------------TGGCATCCAGA-----TACTTTTATAGTTTCAGGATATTCTAGGTCA--------------TTTGGAAGCATGTATTTAAACAGAATTTTAAAGCACCATGTTAACAATTTAAGCCCAATT--TTAAAAAGTCTT---CCTAAGCTTTGACCAGG-TGGTGA--TTTTATGTTGGTAAC----------TTCACTACCCTTCAT------------GAGGTAAAATACATCTTATTTAGTCATTACCAGTGTCTGCTGATGAGGTCAGCT----ATTGT-CCTCAAAGAATATTA-----TTAATG--------CAAACTCACAAATCTAATACTCCATATACATATACTCACTTATGTGGTAGGATTATAAATTG------AATTTTACTTTAGTTTT--AAAGCATTGGT----------TTTGGATATGCCAccaggtatggtggcacacttcctggaatccaacattcaggaggttgaagcaggattactgtgaattcaaggccaagtcctgtctcaagaaacaaaC------TAAGGCAGAGGTT--------GGGGGAGGACTTTAGATATAAATGAAGTAAATGGTATG-----TG----CTTTGAGGATAATACTACCAATGACCATATAATGGAATATTggggttggagggtgtagccaggggtagagtgcatgcttagcattgttgaggccttggggtcaacttccagtaccaaaagaaGATTCTTATAATTCCCCCCAAGTCAC---ATTTCTTAAACATTAGATTTTCTACAATTTGGCTCAAAAAGAGAA-----------------TAACTTTATTTAATTGTGTAAATGGTCCTCAGGACCATTAGGTGTCTTGGAACtaaagggacttgcctccaagcctgacaacctgtgttcactccctagaagccacatggcggaaagaaagaaccagctcccacatggtgcactgacctccacttgcacactgtggtgtgcatgccgcccacacataGATACTCACAGACTCAAAGAAATACAAGTACAGTCGGGAGCCGCTGTAGTTGGCTTTCTAAAGCTTTTTTGTTTTTGTTCGTTTGTTTCTTTTGTTGTTGTTTCAGAGCCTTCAGGGCTTTTTAGGGCATAAATCTGATCCAATTTCTCTGTAACATTCTGGTGTTCCCTAAATATTTCTCACTGGAATTGTCTACAGTTCTAGAAAATTGTTAACCTTTGGGACATCCTAGTAGAGTAGATTGCTTGCCCTATTTGAATGTATAGAAGAAAATGGAAAATTCTTTCAGAATTCTGAAAAAAGA-------CTTTAC---GGATCAAGTCTGC--------------------------------------------------------------------------------------------------------------------CCTTTGGCCTGTATATAACCATTC-TTTTCCCACTTCTAATATGGAGGCCAAGCTACTG---------------TAAAAAAGATAATGTGG-AAGGTATCT-GAAAGGAGTTGGTGAGGATTTCTTCTAATT-ACTGCTTTATGAAACTTTG--GATAATTCCTTTTGTTCAGT--GGACAGCTACAGCTTTCTTAGATGTTAAGATGG--ACACTACTCTTAGTAACCTCTGGTGGTCACTCAGTCAGCTCAGGGAA-TAACTTTTTCCTGTTCTTGTATT----TCTAGGAAAGGCAAGAAAATATTT-TATAGGTGAGCTCACTGATGAAGGTTTGGGACTCTTTTTGTCTCTCTTTTAAAAGCCCCAGGTACACAGTTTGTTAAGCCGACAGTTGGCGTCCCACAAGTGTTCTCTCAGATGACCCCCGTGAGGCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTTACCACCGTCATCCCAGCTACTCTCACCATCCGAAGCACTGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACCCCCAGTACCTCCACTACTCCCACTGCCACACAACCAACCTCACTGGGGCAGCTAGCTGGTCAGCCTCCAGGCCAGTCCAACCAGACCTCGAATCCCAAACTAGGTGAGACTT-GGATGAGGAGCCGGCAGAACAGCATGGGGCAGTGGGTGGGAAGCAGATGATTTTCACTTGGTCAATGTAGCTCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGGGTTACAGGTGAAAATAGCAACGAAGTGGCCAAATTGGTGAATACTCTTAACACTGTCCCTTCCCTGGGCCAGAGTCCTGGGCCCGTGGTGGTGTCCAACAACAGTTC---------TGCTCAAAGAACCAGTGGGCCCGAATCTTCAGTGAAAGGTAAGGTGAGA-GGCTGGACACCAGTCATGCAGTCATGCAGAGAACATTGGTAAAGCAGTTGTTGCATTGAGACC---------ATTGTGAAATGGAGAAATAAAATAGGATGCAGGTGCTTTGATTTGTTTTTACAGAAATGGTAATGTAGTAAAAGA----------TTGAAAATGTAGCTGTAGCAGCT
s HiC_scaffold_1 139820983 2465 - 233722169 TAGTTTGCCTCCATGTTaatgattattttcctttttaatacagGGTTTTCCTGTAAGGAATGTTCGACCTGTacaaaatgcaatgaatcaggTTGGAATTGTGCTGAATGTACAGCAAGGACAAACAGTTAGACCAATTACACTAGTCCCAGGTAAGGAGTAACATATATCCATTTGGAATAAACCAGCATCCAGAagacttgtttttattgtttcag-aTGGTCTAGGTCAGTCATAGTGAACCTTTTAGTGGTAAGTGCCCAAACAGCAACCCAAAAC-------------------CCCCACTGATTGCAAAGTCCTGACACTGAAATTAAACCTGAATagtgaggttttagtttagaaaagaacaactcatacattaacatttattgacttaaaagaaaaacaacatgcatgctataggttcactacca----ctgcT--TTAGGTCATTTCAAAAGTGtacttcaaaaaatattaaagttttaatGATTTAGCCCCaacttaaaaac--aaagcaaaactttctGACCTTTGCCAAAGTGgtggctttatttattttctgttagcttTTCATCAACCTTCAGAAGGGTTCATCTAGTTATTTTTTGTAACTGCCGTTTAGTTAGCTATTATATTTGTT---ATCCT-----------------GTAGGAATGGTATTAATGCAAACTTAAGTCTGTACTCCAGGTACTCACATGTTGTGATTCAGAACTTTTCTTTTAAGGTGCAAGCTTTAGGTATAAATTAAATAAACGATGTAGTCTTTGTAACCTTTGGAGGTCATATTACCAGTGACTA---------ATACTTT--TTCGAAGACTGGGCTGGAGATAGAATG--TGCCTAGCATGGATGAAGTCCTGGC-tcagttcccagtaccagaa-aataGTACTATAATTTCCCCCAATTCTCTTCATTTCTTATGTGTTAAGTTTACTGTAACTcaggccaaaaacaaaaaacaaaaaaccccccaatATCTtaatttaatagttt---tttttcctaaaatgtttgggggtttt--------------tttgttccAAGA------------------------------------------------------------------------------------------------------GCCcaca----------------------------------------ggag--------------------------ttttgttttg-------------tcctgttgttgtttca--------------ttttgt----tatgtgtgatcaGTTTACTCTGTCACATTCTGGTAT------GATATTTTTTAGTTGAATTATCTATAGTTGTGCTAAAT-GTTTTCCTTTGGGACATCCTAGTAGA-----TAGTCTTgtctattt-----tataaaaaagagTAGAAGACTTT------ATTCTGAGAAAGAAGAATCCCTTTTATTCTGGACCAAGTCTGCTGCTTGgcctgtatgtttttttttttttttttttttttttggtaccaggaatcaaactcaagaccttgcacttgccaggcaggtaggtgcttgtgccactgagttatatccctggccccttggcCTGTATACtgccttttattctttctcttccacTACCAAAGTCAAACTACTGATTATATTCTTACAATATAAAAGGTAGTGTAGTAAGGTGTTTTGGAAAGTTTTGTTGGAAATCTTTTACAGTTTAATGCTTTT----ACTTTACTGATAATTTCTTTCTGTGAGTTTGGACATCTAAGAaacacttagatttttttttttctgtaccattcTTGGTAAGCTCTGATGGTAATTGA-TCAGTTTGGGGAAGTaatctttttctgttcttatactATATTTTAGTAAAGGCAAGTCAGTATATATATAGATGAGCTTATTGACCAGGACTT-----TCTCTTTATCTCT----TAAAAGCCCCAGGTACCCAGTTCGTTAAGCCAACAGTTGGAGTCCCACAAGTGTTCTCTCAGATGACCCCAGTGAGACCAGGCTCCACAATGCCTGTGAGGCCTACCACCAACACCTTCACTACtgtcatcccagctactctgACCATTCGAAGCACCGTCCCACAGTCCCAGTCTCAGCAGACCAAGTCCACTCCCAGCACTTCCACCACTCCCACTGCCACGCAGCCGACCTCATTGGGGCAGCTAGCTGTTCAGCCTCCAGGCCAGTCCAACCAAACCTCAAATCCCAAGTTAGGTGAGGCTTGGGAAAAGGAGATGGCAAGCCAGGATGGGATGGTGGTAGGAGAACGGATGATTATCATTTGGTCAACGTAGctccctctttcccctctccACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGAGTTACAGGTGAAAATAACAATGAAGTGGCTAAATTGGTGAACACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCAATAGTGGTATCTAATAACAGCTCGGCCCATGGCGCTCAAAGAACCAGTGGACCTGAATCTTCATTGAAAGGTACAGTAATATAGAGAGACCTTGAGTAGCCAGTCATTCAAAT-ATATTGATAGACTATTCGGTGGATCAAAGTTCTATATGGAGttctaaaatagagaaataaaaca--atacagttGCTATAATCTGTTCTTACACAAAC-----TTTTGTAAAGGACACAGACTTGTGAAAAATGTGGCTGAATCAACT

a score=52962
s chr3            94869811 1614 + 160039680 AAAGAAAAACTTTACCTAATTGGAGTTGATGGTTTAAAAAAGGGGGTGTGGCATTTGTAGCTCATGAGTCAAAATAGAAACTGGCTGCTAGCTGAGAT--GGTCTCTGGGCATCAGTTTGCCAGCCCTGGCCTAGAGTTAGAACAGTAAAGGGACTGTGTCTCACACACAGTG-CCTCTCATGCTTGCTCTTTACTCTTGGCTCTCAGGGACTGTGCAGTCTCATCCCCGTATGCTTTACTAATCTTAACAATTCTTTTCCCTTCTTCCAGTGACCTCTTCCATCCCAGTGTTTGACCTCCAGGACGGTGGACGGAAAATATGTCCACGGTGTAATGCCCAGTTCCGTGTTACTGAAGCTCTGAGAGGTCACATGTGTGTAAGTGATACCACCCATGATAAAGATCCAGCTTAAGTGGCCTCTTCT----ACATCTTTTAATACTGGAATCTTGAAAAGCAGATGCT-TAAACTGGCTTGGAAACTTTTGTAAAAGCTGTTCTTTCTTGTGTTTTGTTGTAGAACAGGGCTATGAAAACTGGGAC-TGATAAAATACATATA-----AAGACCGCCAA------TAGGTGAT-TGAGCTCTTACTGTCTTA-CGTGATCGATCTGATCTCATAGGACAGCAAGTTTGTTAGATAAGACCTCAAGGAACGTTTATATCC-TCAACTCCATTTTAACTCCATCACTGGGAGTAT-GAAAACCTGTTACCTTGTCCCTGCTTTATTTGTCGTCATTCAGTTTTCTGGTATCAGTCCAAATGGAGCAGTTGGACCTTCTTTCT-CTAGAAAGCTCAGAGTCAAGTGA-TGCTAGTTCAAGGCTCAAG--ACGGCGGGAGAGGAGCAGTGAGAGGTGCAAGGCTTGGGGCTGTGTGGACATGGAAA---------AGAGAAGTGTAAACTCTGGGGCTACTGAAGGAAACGAGATGAAAGCTGGACGAAGACCACCTTA--AACCCagctcagtgtgccggcaaatgcctacagtcccggctacccagtaggctgaggcagaaggattttgtgaa-ccagtggcctagcctagacagcttaaataagatcccagtgtccaa----aaacaTGTCCTTTATTACCTACATTAACAAA-GCATTCCAAGGGACTGTAGGTGACATGATGGATTTATTAGCTCATCCTAGTTCCTGG--TAAATGGAATGATGATGTCGTTTCTTTTAC--AGTACTGCTGCCCTGAAATGGTTGAGTACCAAAAGAAAGGCAAGTCCCTCGATGCAGAGCCCAGTGTCCCATCGGCAGCAAAGCCCTCGTCCCCTGAGAAGACAGCCCCTGTTACTTCCACACCCTCCTCTACACCAATTCCTGCTCTCTCACCACCTACCAAAGTACCAGAGCCAAATGAGAATGCTGGAGATGCTGTCCAGACCAAGCTTATTATGCTGGTTGATGATTTCTACTATGGACGGGATGGGGGCAAAGCAGCCCAGCTCACGAGCTTCCCTAAGGTTGCCACGTCTTTCCGATGCCCTCATTGTACTAAGAGGCTAAAGAACAACATTCGGTAAGCTTGAAACAAC----------AGCCTGCACAGAAGTACACAGGTGTTCTTATTACATAGTTAAGGTTTTCTTTTGGGAAA--TATTAACTATGATGCAGTCTTTCTT
s HiC_scaffold_1 139826018 1589 - 233722169 aaaagaaaaatatgcctaaccaaaa--aaagatataaaa----------gtcATTCTTTGCTCA-GGGACCTAGCAGAAACTGGCAGTTGGGTTGGATTTGGTGTCTGGGCTATGGTTTGCTAACTTTGG--TTGAGttagaacagtaaaatgaatgtGCCTCAAACACAGTgatcttttgtgtgtgtt-tgtacactT----CTCAGGT--------------------TATCTTGTATTAATCCTCGCAATTCTTTTCACTTCTTGCAGTGACCTCTTCTCTCCCAGTGTTTGATCTCCAGGATGGTGGACGGAAAATATGTCCACGGTGTAATGCCCAATTCCGTGTTACTGAAGCTTTGAGAGGGCACATGTGTGTAAGTGACAGTGTTTGTGATAGGGATCCAGCTTAAATGGCTACTGCTGAATACCTCCTTTAATATTGAGAGCCTGCGAAGCAGGGGCTGTGAACTAATGGAGAAGGTTTTTAAAGAG------TTTCTTTTAGTCTGTTAGA----AGAGCTATGTACTTTGGAATGTGATAGGATAGATACATTTAAAAGATCTTCAGATACCTCAGAACATATGAAACCTTACTTCTTTAGCATGGTAGATTTGAAAACTCCACAGAGCAGGCTTACTAAGTAAGGG-TCAAACCACACTGCCCTCTGTTAAGTTTCTGTGACTTGTGTCATTGAGTGAATTGATGAGTTTTTACATGGTCCCCATTTTCA----AGCCTTTTCATTTTTGGGTATTGGTCCAGAAGCAGAACTTGGAACTTTTATCTGCCAGCGAACTCAGAG-CAAGTGAATGAATGGTTAAGGGGGAATCTAAGGCAGGAGAAGCATAAAGTAAAGTGTTAAG----AGGTTATATGGCTGTGGACATACACTAGTAGAAGAGTG-AAACCCATAGAAAACTTAAGGA-------TGAAAGCAGG-CTAAGAATACCTTACCACTTGAGCTGGGCATAT-AGCATGTACCTATAGTTCCACCTGCTTGGCAGGCTGGGATTGGGGAATTGCTTGAGTCCAGGAGGCTCCCCTGGACAGTACAGCAGAAACCTCA-TCTCTAACACAAAAGGAGTATTTTACCACTTAAAGTAGCAAACGTCTTACCAGGGAATGTCAGTGA--------AGTTATTG---TATGGTAGTCCTCAGAATGACCAGAAtgatcatgtatttttttctgtgtagtaCTGTTGCCCAGAAATGGTTGAATACCAGAAGAAAGGCAAGTCCCTGGATTCAGAACCCGGTGTCCCATCAGCAGCAAAGCCCTCATCCCCTGAGAAAACAGCTCCTGTTACTTCCACACCTTCC---ACGCCTATTCCTGCTCTCTCACCGCCGACCAAAGTACCAGAGCCAAATGAGAATGTGGGTGATGCAGTCCAGACCAAGCTCATCATGCTGGTAGATGACTTCTATTATGGACGAGATAGTGGCAAAGCATCACAGCTCACAAACTTTCCTAAGGTTGCCACATCTTTTCGATGCCCACATTGTACCAAAAGGCTAAAAAATAACATTCGGTAAGTGCTGAAGAGCATTAGAGGTTATCCTGCATGAAAGtaatcttatatt-ttcttacatatttgaGTTTTGCTTTAGAGAAAGCTCCTAACTAGGGTACAGTCTCACTT

a score=21991
s chr3            94872180 519 + 160039680 GGGGAGCAAATCGTATTTGTTCATAACTGTA---TCATATCTTTCATCGACTGCTGACTTAGTTTTCTGTACTTTCTCTTTGTGCTGTGCTACAGATTCATGAACCACATGAAGCACCACGTAGAACTTGATCAACAGAATGGTGAGGTGGATGGTCACACCATCTGCCAGCACTGTTACCGCCAGTTCTCCACCCCTTTCCAGCTCCAGTGCCACTTGGAAAATGTTCATAGTCCCTATGAATCTACTAGTAAGTTTGAAAACCCAAACTCCAGCAGAGGGATGGGATCTATGTTTTCTTTGCTTACTAAATGGCACTAGCAGAGAGCTCAT-----TATACCCAGATAATAGTGATAGAGGAGTACTTTT--------------------------------CTCTATTTTTTAACAAGCATAATTTTAAAGTACTTTGCTATT-AAATTGGTGTTGTCCGTGAAATAGTAGGTGGTGAGCTAGAATGTTAGTTACAGATTTTACAAAGTAGGAA---CAACAGCAAACA----CTTAGAATAACAGAAGTCATCTGCTTAAAAC
s HiC_scaffold_1 139827742 525 - 233722169 GGAGAGCAGATAAT----GTTTATGATTCTACGATTGTATTTTTCAAAGATTACTGATTACACTTTTTATACTTTCTCTTTGTGCTGTGCTACAGATTCATGAACCACATGAAACACCATGTAGAACTTGATCAGCAGAATGGTGAGGTGGATGGTCATACTATCTGCCAACACTGTTACCGCCAGTTTTCCACTCCCTTCCAGCTCCAGTGCCACTTGGAAAATGTTCATAGTCCCTATGAATCTACTAGTAAGTTTAAAAACTTACATGC---TAGGGAGATGGA---------CCCTTTTCTCCCTGAATGGCAGCAGAGGGAAGCATATTTATGTGCGCATGGATAACAGT-ATAGAGAAGTACTTCTGCATATTTGTAGCCATCCTCTTATTTTACTTACCTTATTTTCTTATAAGCCTGATTT--AAGTATTTTGCCACTGAAGGCAGTATTTTCGATGAAA---TACATGGTGAG---------------TACATCTTACAGAAGAGTAAACGCAAGACTAAACACAGGCGCAGAGTAAT-----TCATCTACTTAAAAC

a score=28569
s chr3            94874538 1371 + 160039680 GGGGGGGGGGGATCTTACATCCAAGTCTATGTCTCTATGATTTTTCTTCTTCCAGCCAAGTGCAAGATCTGTGAGTGGGCCTTTGAAAGCGAGCCCTTGTTCCTCCAGCATATGAAGGACACCCACAAGCCTGGAGAGATGCCTTATGTTTGTCAGGTAATG-------------AATGCCTT-----------TTTCAAACTG----TAAAGAATCCACTAGTGGATATTTCTAAATACCCACTGTACAGCTTCCATTTATGTGCTCTGAAGAGATA-TGGGAAGAGTAATAGTGCAGCTCCTATAGGTAGGACTTT----GTAGAAGATAACACCCAGACAGGGG----------------------ACTCCTG-----------GCATACC--AAGAGC-TGTCTCCCGAGCTCCCTCTCAGGATAGAG-----GATGCTTTTCTGCCTTAGAGAGTATGGGTTGTTCCCAGAC---------------------------ATCACAGCTAAGCTTACCATCCACATAGAT----------------------------------------------------------------CTCCAGTGCGAATCCAAGACAGTAACACCTGTGCATTGAAGAATATTCCTGCATC------AATCTTTGTTGTTATCTCTCT-TTATGGCTCCAGTTGTTCACCTTGCCCTTAT---TTTCTTTCTTGCATAACTCAGGTGTGTCAGTATCGCTCCTCCCTCTACTCTGAAGTAGATGTCCATTTTCGGATGATCCATGAAGATACTCGGCATTTGCTTTGCCCGTATTGCCTAAAAGTCTTCAAAAATGGCAATGCCTTCCAGCAACACTACATGAGGCACCAGGTATCAGGCACAA-GCAG-TCCTGTATTCTTATTTGAGGTTTGGATC--------CTAGGGACAGGGTTGAGATAGATAAATAATGTTGGTAGAGAAGATAATAT-TGTGTTAGCAAACATCATTCAGTTCTTGTTTCTTCCTACACACTAGGTTAGATGTTAGAGGTTTAGTGTTAAAGGAAAATACACGCACGCACACACACAAAAATGAGGGCTTTGTTAATAGGGGACGATACAG-AGAAGCATCTATCTATTCTGGGAA-CTGAAGGGACATCCAGAAAGAAGTGCTGTTTCAGGTCTGAAGGATGAATAATGGTGGG--GAATAAAATAGGACAGAG-----------CCGG---------------TGTGTAGG----GAGGTAAGGGGTGTTCAGAGCAAACGGTAGAGTACAAGGTACATGTTGGAAGCTATGTGCAGATAGATTATGGGTGTTCT------------------CCTAG---GCTAGGAAAAGGACTCAAGTTCTGCAGTGATAGGTTTAAGATTT--TACACTGCCAGCACTA-AGTAAACTA-------AGTCAAAGCTAGAGCAGAGG----------GGAAAGATTACCCAAAGGCTTTAATC-----------AGGTAGGCGATATTAGTGGTTGTTGGCTTTTGAAGTAAA-GAAAAGAGATGGAGTCAAGACGCATTGCTAAAATTATATATATTTACAATGCAGAGATGGGTTAGGT-GAGATAACAAGGGAGTA
s HiC_scaffold_1 139836110 1582 - 233722169 gggGGATTTTGATCTTGTTTTCAGGTGGTTTTattgattattatt-ttcttacagcCAAGTGCAAGATCTGTGAGTGGGCATTTGAAAGTGAGCCACTATTTCTCCAGCATATGAAGGACACTCATAAGCCAGGAGAGATGCCTTATGTTTGTCAGGTATTGCCTTTTTCTCCAGGAAGTTTTAGCCATTTTACTTTCAGGCTGAATATAAAGAATCCATTAATGAGTATTT--AGGTACCTACTATACATACTCAGTTTGGCAATTCTGAAGAgataatagaagaaataaaa----aatttcaatccTTAGGATTTTCCATGCAGGAGA-AAAACCTTGAAAAGAGCATAACCACAAGGTAATATTTTACTTTGGCGGGAAGTTGTGCATGCTGTAAGAGAATGTCTCTTGGACTTGCTCTTTGGAGGCAGACAAAGTTGTATTCCTTAGTCATAGAATA-ATATTGGTCTCAGACTCACCTgttctttattttgtatcttaaGTCACAGCTAAATTTATCATAAGCATAGATGTATTTGAAAGATGGAAACTAATTTTTTGAACGTTTTTAACTTTTACCTTTTAACCTTTTAAaccttttctctaaaaaaaaatcattaatttctatACACTTAGGAATTGTTTTTCATgtttaagaatattt-ttgctGCTTCTTTCTTAAACCTTCAGTCATTTAACT----CTTATCCTTTTCCCCCTTATGTGACTCAGGTGTGTCAGTATCGCTCGTCGCTATACTCTGAGGTAGATGTCCATTTTCGGATGGTCCATGAGGATACTCGACATCTGCTCTGTCCTTATTGCCTGAAGGTCTTCAAAAATGGCAATGCATTCCAGCAGCACTATATGAGGCACCAGGTACGAGGCACCATGCAATTCCTGTATTCTCGTTT---GTTTTAATCAACAGATGTTGGGTCCAGGGCTTAGCTACGCAAATAATTTTGGAAGAGGAAACCATGCATATGTTTGC----------------------CTAATTACATGCCATGCAGTAAGATAGAGATTTAGTGATAA---ACAGTAAAAGCATG---------AAGAATATTGTGTTAGGGTGAAGTATAAGGTATAGAAAAAGCGTACACTTACTCTGTAAGCCTGGTGGGGCTTCC----AGAAGTAACATTTAATACTTAgaggataaaaagaaatgagtcaGATAAAATGGAACAGAAGAACAGTGTGCCCAGGTCATAGAACGAGATTGTGAAGGATCAAAAACCAGAGATACTTAGTGTAAATCCTAG-GTATAAGGTAAAGATTGGGAGTTA-----GGACAGATCACGGGAGATCTGAATACAATAAAAAAGTCACTGGGAAGCTACAAATAGGCTGTCAGCCCTGGAGTGATATGTTT-AGATTTGGTTTATTTACAGCTTTACAGTGACTCATCTGAGGAGAAAGGACTAGAGAATATGATCAGAATTTAGGGAGACTAACCAAAAGACTTTTTCTATAGCTTAGGAGACAGGTGATAGTAG-ATATACTATCTTTTGAGATAAAGGAAAAGAGGCAGAGTTGAAAGATACTGAGAATAAATGTTACACTGATGATTTCAAGCTGGATTAGGTAGAAGTAGCCAGGGAATA

a score=274970
s chr3            94876204 6196 + 160039680 [encoded data, 6563 characters]
s HiC_scaffold_1 139838934 6241 - 233722169 [encoded data, 6563 characters]

a score=63900
s chr3            94884305 2783 + 160039680 acaaaaTCCAACTCAGCGAACACTTCAAACGACTGATTTATTTTACAAAA-GTCTGCCTTTGAGCCAGCTACAGTC--ACGTTTAGAAGAGCAAAGCTTCAACA-CTCTGGAC-------------------------------------------ATTCAACTGGATTTCATTCAAAGCCACTAAAGAAAGAAGAAACATTTAGGG-----AAAATGAAGGCGGATAAAGGCATCAACTTCTGAAGGAGCTCCCCATTTCCAAGACCACCCACCTGGAGAGTTCCCCCGCCCCCAACCTGGAGAGGTTCCCTCCAAAACCACCCACACAGAGTTTCTGCTTGAACCCTCCAGAAGAGCCATTCTGTAAAAGTCAAGAGCTTCC----CTGTG---TCACCGATCCCTACTGTAGCTT-------GCTCACCTGATCATGTGAGCGATGTCCCAGTTGGTCTGTGCGGACAGCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGTGGCAATTTGAAACTGAAAGAAGGCAAAGCGTGC----AATgatagcg--tctcactatgt------aaaccaagc---------tcgcctcaaatgcagagtccca-------cccacccctgtttccctactg----------ggattaaaggcatgtgccaccatgcctggctCCAGAATTTGTACCTTCCAGCCCATTTCTCACCCGGTTATACGAACGGGCATCTCTGTAGTACAGCACTCTCATGCAGCGCTCCACAAGCTCCCGAGCCTCAGTCTGACTCAGCACTGGCTGCTTCTCTAGAACTTCTCGAAGCAGAGGCTACACAGGCGGGCAAAACATTGGAGAAATTAGACTGGCTTAACAGAAGGCAACCTACTCTAACCCATGTAAACAGGCACCA---------AAGTGGATGAGTTTTCTACCCACTGTTTCAAAAGAATTAGGTGCTGGCTTTGTTTGTTTGACATTGAATTCTTTtgtatgggtatgtgcacatgcacgcagaagtgagaaaacagctcttaggtgctggttgtctcctccaccatggtgaccccaggctgcctgtcagccttggaaagtgacttaacccaaggagtctttgttttgtgtttgaaatagtcttgctatgcagcctacatacatgcagtcttgctatgcatggtcctcctggcctcagcctcctgtgcactaatattacagatatgtgccaccatgcccagctAAGACTCTCTTAAAAGTGGGGAAGCCTAGGGCTGCCACTGTTTCCATTCCAAGGCTGTTTCTTGTCACTGGAA-GTTAATGTAAACGT---ATTCTCCTTAGACAAAGAAAACCAGCTGCCCAACGTTAGGATTCCAGCCT--CTCTTATCAAAATTCCAAGGGAAAGAG-----ATTAACATTGCCTTCTCATTTCTATTTCTCTTCTCCCCATCGCTAGGCCCACTACTTACCTGAGCCAAGTATGCACCATAACCAGTGGCCAGTGAAGGGGCTTCATAAGCTACACCAAGCATGTCCACATAACCGAGGAAGCTAGAGGGACA-AACACATCAAAGAACTGATCTAATCTTCCATTTCTTAGCTGTGTCCATTAGGTCTGAATTAAAAGATGGAAATTCTCTGGGGTCAAAGTGCCTgagggtggggaagcaggatagctcggtggtgagggcacttgccagcatgcccgatgacccaagtttgatctctagaatccacaaTGCAGAAGATGCATGCACACACAAACACACACACAGTACTACACAAGCACAAATACCAAAAGAAGTGTAAAGAACCATTCTGTTTAAAGACTGAAGAGACACTACATAGGTGCTAGGTTAGGCGGTCAAGGAAGTTA-----------TCAAAT--ACCTTTCTCCGTCAGCATAGCCTCCAATGACCATGGTGTTCCACAGGGGATTCATCTTGGAGCGGCGGCTGTACATGGCTCTTGTCAACCATGAATGAATAGCTCTAGGGCTATAGCTGTGTCCATCTCCCAACAGCTCTTCATCAATCCTTAAATACAATTG------AGAAAGCAATGATAACAG--GTCAGGCTC-CCCATCCCACTCCCTGTTCTACACACAATTCTACAATCCAAGACCACCCCCCCCAATACCAAAAAGTATTCCAAACATTCA-CAAATGTCTCAACAATTACCCAAAGTCTCAAGTCCCTCCATCCCGCCTACAGGAATAATAAAC----GGA--AGGCTGTCCGCTCCACTTGGA------------------GGCGACTTACACCATCTGGCCGAGAACTTGTTTCAAATACTGGAAATCAGCGTAGTCTCCCGAGGCACCCAGCATAGTGCTGTCGTTGACTCGCATAATACGAGAGATATTGCGGAAACGAGCCAGGGAGCCGTAGGAGCCCAGCATGTCTGCAGCAATCACCACTCCGCCGTCGAACTTCACCCCGAGTACCGATGTCCCGGTCACCATGGGGTTCCTGAATCGTGAAAAGGG--------------TCCCTGAGCGCGAGG---------------------------------------------CCGGAGCCCCG------------ATTGCTGGCGCCCGCGCATCAGAGGTCCCCGCATCCCGGCCCGCCG-------------------------------------CCCATTCCCGGCGC-GGTGAGAGCGC--GACTCACTGGGTCCGAGTGATGGGACCCTCGCAGGGCGCCGACGCCGGGTCCATGAGGCCGCTGGGGGTGGCCGGGATGCGGTAAAACTGCCCTGGAGCCGGACCCCCGGCCCAGTGGCCAGCCCGTGACTCCCAAAACGCTTCCATCTTAGTCACCTCAGCCGACAGAAATGAAAGCGCTAGCGTCACCGGAAACGGAAGTGGTCCTT--TGCCACGCCTCTCTTCTTCCTGCCTGCCTCTTCCATGGGTCAGGACTCCGGCTCTGTATTTATAAAGCCGTTT---GAGGAGTCCTGGTCCAGAGTAGCCGCCAAGACTGACAGAAATGCA
s HiC_scaffold_1 139845555 2539 - 233722169 ATAAAGTC--ACTCAGTAAGCACTTTAAAGGACTGCTTTATTTTACAAAAAGTCTATCTTTGAACCAGCCA-AGTCCAAAGTTAAGGGGTGCAA--CTTCAGTATCTTTGAACCAGCCAAGTCCAAAGTTAAGGGGTGCAACTTCAGTTCCGAATAATGCATCTGTATTTCATTAAAagccactaaaaaagaaaattgcattaAGTAGCATTAAAATTGTGACACACAAAGGGGTCAATTCCTAACAG-----------------------CACCTGTA----CCCTCCAACCAAAACCTAGA-----------------------CTAAGAATTTT---------CCTTCAGAAAAGTCCAGTTTAGCAAGCCAAGGAGTCCCAActctatacattttttttctcctactgtaattttaattttagtcacCTGATCATGTGGGCAATATCCCAGTTTGTCTCTGCAGACAGCGGTCCCTCTATTTCAACACCTTTTTCAGTTACCGTGGCAATttcaaactgaaagaaaaca--gctttcctTAAATTAAAGAGGCCCTTAGGATCTGGTCAAAAGTCAAGCAGTTGTCCCCTGTCTGAAAACGGGAGTCACAGAGGCAATCTGTCCTTTATGTCGTATGGACCACCCAGAGGGTTCCAAGTAAGTATT-CCAAGCCTG---CCAAGGTTTTTACTCTTCA-----CTCCTCACCCGGTTATATGAACGAGCATCTCGATAGTACAGCACTCGCATGCAGCGTTCTACTAGTTCTCGGGCCTCAGTCTGGCTCAGCACTGGCTGCTTCTCTAGGACTTCCCGAAGCAGAGGCTA--------GGGAGATCAGgggaaaaa---aattagctga------------------taAC--ATGTAAACAAGAAGCATAAACATGTGAAAAGATGA--TTTCTAGTTATTGTCTCAC-----TGAGATGCTTACTAAG-------ACCCTTGAAGttctagg---------------------gcagtggtggcaaa-----cctaagGCAAATGT----------GCCACGG------CAGGTTGTGTGT--ACcactgaaaatg------ctaaaagaTT----------------------------------GCCCAC-------------CACTGTACTAGGGCAT----------ACATTCTGTACACC-----------TGTCTGCT---------------------------------GAATCCCAGGCATGCCACT----------------------TTGCCACTGGAATGTCAGGGCTAACATTACAGCTTCctgatacaaagaaaacaaaa-----aacaaaaaaaagctggCTTGTCCCTCATGAGAATTCTAGGGGCACAAGGAACCACTAAC-TCCCCTTACCTTTTCCTCCCCACTCTCCCTAACCACTGAACCCACTTCTTACCTGAGCCAAGTATGCACCATAACCAGTGGCCAGAGAAGGGGCTTCGTAGGCTACACCAAGCATGTCCACATAACCAAGGAAGCTAACAGGACACAATGGGTCAAA-AACTCAT------TTCAGTTTCTTAGCTG--------------------AAGAATGGAA------------TAATGCGTCTGAG--------------------------TAAAGG---------------------------GTTT-----------------------------------------------------------------------CACCAGGGGAAGAAGCAAGAA-------------------AAGACACACTACACAGGTGCTAGGCTGGGTGATTAAGGAAATAAGTTATTTGTATTCATATCAACCTCTCTCCATCTGCATAGCCTCCAATGACCATGGTGTTCCACAGAGGGTTCATCTTCGAGCGGCGGCTGTACATGGCCCTTGTCAGCCAAGAATGAATAGCTCTAGGGCTATAGCTGTGTCCATCTCCCAACAATTCCTCATCAATCCTTAAAGGGAATTGGTTGTGAGAAAGGGATGAGAATGGAAGTCAACATCACCCACCCCAA------------------------AAGACATTACCACCTATTctgctat--aaatatattttcaacgTCCATCAATTCTCTCAAACCATTGCTGCAGCTTCAACTGTTCCCATTCGATTTAAGGGAATAAAACACTCCTGAACTAGTCTGGAGTTCCCACTTCGAACTACTCCCTATTCTCCAGGCGACTTACACCATCTGGCCGAGAACTTGCTTCAAATACTGGAAATCAGCGTAGTCTCCAGAGGCACCCAGAATAGTGCTATCGTTGACTCGCATAATGCGAGAGATGTTTCGGAAACGAGCCAGAGAGCCGTAGGAGCCCAGCATGTCTGCTGCAATCACCACTCCGCCCTCGAATTTGACGCCGAGGACCGAGGTCCCGGTCACCATGGGGTTCCTAAAGTGTGAAAAAGGGCTCTAATCTGTCTTTCCGGGGCTTGGGGGTCCACTTCTCATTTTCGATGGGTCCTTCCAATTATCCGCATTCTCCGGGGCTCTGCCTGGGCCCTTTACTGctcgcgccc-cccccccccgccccgcccagcCCGGCCCGCCGGGCTCGCAGAACCGGCAGCGGCCCCAGACCCCACGGTCCTTCCCCCGACTCAGGCCGGGGCGCTAGACTTACTGGGTCCGCGTGATGGGGTCTCCGGGGAGTGCGGACGCTGGATCCAAACAGGAAGTGGGAGTGGACGGTACTCGGTAGAACTGACCTGGGGTCGGACCCCCAGCCCAGTGCCCACACCGCGACTGCAAAAACGCTTCCATCTTAGTCACGGTAG----GAGAAGTGAAAGCGCTTGTTCCGACGGAAACGGAAGTAATCTTCGGTGTTacacttttcttcttcctgagaGCCACCTTAAGGAGCCA--------------TGTTGATGAGGTCATGTCCGAAGGTACCATTGTCCTGGACAG------GGATTGATTGAGATGCA

a score=18861
s chr3            94913966 2696 + 160039680 ttcaagaatgtcctatacacggggccatgcattgtgcaaccttttacactgggcttttgtca--------------ctgggcatggtttt-----------caggttgttgtttcct-ccttactgctgagtaataag--------tatggcgtgacatggattgctagagtctgtttaatcattctcaagcttcaagggcat-cgggtcgttttccttccagtttcacctattccaaatacaactgctaaaagcatttctatacagattttcctgtgtgCTAGCCTCACTTTTACAACCGACCCCGAGGCTA-GGCTAGGATTGATGGCTATGCTTTTTGTTTCTCTCCTTCCTTTGCTTTGTtaatagctcacatttatggcgtgtctgttgcgtgccagagcctgttctaagaactttacaggcaccacttacttctcacaattactatcttgggtatgagttagtgtctttcccactgggcagatatgggaactaatgacaagagagACACACAGCCAGCTTGTGCTAGCATTGAG-------CCCTTGGAACCTGGG---------CTGCCCCTTCACCAGTATGTTACAAAGCCAGGCTCCAGTTGACCCAACATCTTTCCTTATGGAGTGACCCAA-GCCCTTCATTCGGGGAGGACCTAAACTTTTGGATGCAGCACCCAGGAGTGCTGC---CCTGTGCTGTATCCCCTCTCCTCCCTGACCCCATGACAACACCATTTCCCCTCATTTAACATCTTTTCTGCCTGATTACCCAATGGTTTAAAGAGCTTGGAAAAAGCCAGGTAGTCCAATTGAGTTCCTGCATATCAGAGCAAATCTTTTTGGAGTGCtgttctagtttgttttccattgctgtgataaacacctcggccaaaagccacttgaaaaggaccaatcacagtccatcactgagagaagccaaggcaagaactcaaccagggcagggacatggaggcaggaactcacgcagagaccatgaaggaatactgcttactggcttgctctccgggttatataacttaaacctcccagaatcacctgccgaaggatggaactgcccatagtggtgtgggtcttcccacatcaatcattgtcaggaaaactcccacaggcctatatgatgaaggcatttcatcataaagagatgagagaatgaggttccctcttcccagacgacccttgtttgtgttgacttgacaaaaacaaacaaataAAAACCCCTACCCATCACAGGTACCAAACCTATAAACCAGTAGACTCCCAAGTCATGGCGTAGAAGCTAAACTGTCATAAATGGGTCATAAGGTATAATAATAAGAGGCTCCACTTTGGCCTGGACCTCTTCCACCTGA-GGCTCATCATGTGTTCTGAGAGAGAAAGGATAGCATAGAAGGGTCGTTGGTTCAAGCCATGTG--TTCTGTTGTGGGCACTCCAACCTCCCAAGG-CTTGCAATAGCCTAT-TTCTACAAAGCCAGCTACTTCTGAATCTTGACCCTATGGGTCTTCCTGGaatagctaagaagtatgtgtatcccagagccaagatgtctgggtttgaaaaacgggtatcactactcattccactgccattcattgcctttagaccatttacaaaggcttgtctgtgactcggttcccatatttgACTGGT-TACTATGAGGATTAGAAGAAATCATACAGAGCACTCTACATACTGGGTGTTCTAGTTGTGTTTGTTTCCTTGTTTGTTTGTTTTGTTCTGTTCTttttacaacttgacacaagctatagttatcttggaagaggaaccccaattgaagtcttctacaggcaatctgaggaccatttttcagattgatgattgaggtgggagggcccagcccactgtgggcggtgttacctcttagtaggtagtcctgggtggtataagaatgcaggctgagcaagccagtagtcttcacttctccagagctttatttcctgccttggctttcccctgaagatggactgtaacatgtaagccaaagaaaccctttcctccccaagctgcttttggtaatgcagttttaccacagcaatagaaagccaaactaATCGAGCCTCTAAACTGAGAGAGTtggtcagaaaccacaaaatgtggaacaccataaccacatctgaaacacaccagatgcccacagatggtagacaggggtggcagagggatggaacaaggcaagcaaa---gaaaccaaaacc---acatttctttgtagagggaacaacacatctctgcaccttctctgctggaagagagccagtgtaagcagcccttcacaggcggcaagctggtttcGTAGCTTCTGTGTGCCAAGCAGACCTTCAGCACCAGCCCCATCTGGGGTGAGTTGGTAAGG---GGTGTTCTATGCTGTAGAGGGGGATTGGCAACATAGAAGTCTGGGAAGGAAATGAATGGTATCACTGAAGCAGGTGTGTCTTGTCTGCTCGTCAGGAGTGCCTTCCGGAGGG---CTGATGGGGAG------------CACCTCGCTAGCCTGGGTTTTGCT-CAGGAGGTCCATTTACAGGCCTCCTTCCCAGCCCCTCTTTCCCTAGCCCTCTGATGTTGCCGCACCCCAGTCTTTGTACCTAGCCAAAGCCTATGCTCTGTGCTGTGTCAG----CTCCAG--------------TAAAGACACTCTCAGGCTGGAATTTGCCCAGT-GGAGGATTTTTTGTCTCCACTAACTTCTAAGACCATCTCTCAAGGAGTT-TATC--TATTTT
s HiC_scaffold_1 140030554 2132 - 233722169 TTAGATAATGCCCACTAATCGAAATCATGCAATTTGTAATCTTTTGCACTTGAATTTTTCCATGCACCATGAGGATCTGGAGATTCGTTTGAATCATTGCATAAATCATGAACTCCTGTCTTATTGCTGAGTCAAGGGCCTTTGTATACGAC-------------CCACAGCTTGTTTAATCATTCACATG-TTGAAGGTCATGTAGGATGCTTTCTTTccaggtttagctattacaaataaaaCTGGTATACACATTCCCATACAGGCTTTGTGTTATG--AGTCTCATTTTCACAACTGATCCTGAGGCCATAGTTGGTATTTATGACT----TTccccttttactttttcctctacCTTATTAAAAACTAACATTAATAGGATGTTTATTGCATGCCAGACCCTGTTCTAAGGGCTTTACAAGtatcatttaattctcataattaCCAT-TTAGAAGTGAATTATCATCCCCTGCCCTTCAGAGAAATAGGAACCAAAGATGAAACAGGTACACAGCCAGCACGCCTTAGTACTCAGACTTCAACCCAGGGAATCTGGTACCAGAGTTCAACCTCTCAATTACTATGTTGCCGAGCCAGCACTTAAGTGACC-AACTTTTCTCTTTGTAGAGTAACCTAAAGCTCTGGACCTGG--AGGCCCTGAAATTTTTGTTGT----CTCAATTCTGCTGCTTTCATGTTTTGT-TAACTTGAACTGCTGGACCTGGTGATA-CAAGGTATCCAC------GAAGACTGCCCTGCCTTGC-ACCCAGCTTCTCACGGAGC--------ATCCCAGAAAGCAAACCTGCTTCCTGGATGTCA------------TTGTATCGCTGACTGAGTGTGTT---CATCTCTA----AGTCACCTC----AACACCCA-------------AATTAAAGCTCCT---------------AGGTAACAGCT---------------------------------------------------accttgttt-----cttcctct---------------------tcacaAAAT-----------GGCTTGAAGAGCCCAAAGTAGCGAAGGGC-------------CAGTCTCAAG-----TCCCA---------------------GTTCA----------GTGGACTAGTGGGATCT-------------------------TGGTGACT--------------GCAGAAAATCTCCTTC-------AGGTGCCACATCTCTAAGCTAGTGGAGCCCTGAGTCAGGGGACTGCAGGGAGGGTGTTTGAAATGGGTTATTAGGTGTGATAGTGAGAGGTTGCgctcctgcctctacctct--caGCTGCTGGCCCCTCATGTATTCTGACTG-----GTACAGAAATGAGGAAATGATGCTCAGAGCAAAGTGAATTCTGTGGGGAGCACTTCAACCTCTGAAGGTTTTGCCATCATCAGTCTTCCATAGGGTCAGCTGCTTCT-----------------------CAGAGATAGGTGCAAAATG----------AGACCCACGATTTCTTGGTCTGTA----GGGTGTGGCTA------------------AAAGCATGGAGCCAAACCGCAAGGG-TCGGCTG-----CATGCCTCACCACTGGCTTATCTACTGT---------------TAACACTGAGAAATTTACAAA---------------------ACTTCTCTG----------TGGCTCTGT------------------------------------GAAG---------------------------------TGAGGA-------------TGATAAT--AGTACAGAGGGC----------GTGGGGGGTGCTGTCAACT-------------------CAGAGAAGTGCATACT------------------------TGCAGAGCCTT-----------------------------------TCAGATGTGACACAGTGTGACCAGTTTCTCCCC---------------GTACAG----------------GAAGGCC------------CCTT----------------GTCAGGAGCCACATCATGTGGGAGACTGTAATGGTGTCTGAGATATCCAGGAGCCCCACAGATGGCA---------------------GAGCAGGGAAAACAAATTCAGATCTAAAACTGTGAAATTGCTTTCCAGAG---AAAACATATTTCTGCTCCCCCTACCCCGGGACAGAGCTACTAT-GGCAACCCTTCTCCTAGTGGAGCCTGGTCT-GCAGCTACTGTGTGCCGCTCAGACCTCCAGCAAAGCCCACATGCAGCCTCTGTTCTTGCCGTCTTGGCCTCTATGCT-----------CTTGGAACA------TCTGGGGAGGAAATGGAATGATTCAC-AAAGCAGGTTTACCTCACTGG---ATCTGGAGCAGCTTCCAGGGAGACACCTATGGGAAGTGGTCAGATATTCATTCTTCTATGCTGGCCTTTCCTGCGTGAGATCCATTCACAGGCTCCTCCCCAAGCCC--CTTTCCTCAGCCCTCCAATTCTGTTTTATCCAAGCCTGTCCACCAGCCCTAATCCCCAGCCTTGCTCatggtcagtgttctcagggggCATGGCCAAACTAAAAATGTGCTCTACTTAAAATGTGCCCATTGGggggatttttcttttctactaaATACCAAGGCCATTTATCAGAGGGCTATATCATTATTTT

a score=20714
s chr3            94921957 848 + 160039680 TTTGGTTTCTGGGCAGCCTTTGGTCAGTTGGGCAG--GCAGTCTGGGACTCCCACGTCTCACA-CTTTCACCCACAGAGAAAGCTTTCAGTGTTGCTGCAGCATCAGATGGACCCTGGGGAGAGCTTGGTGGGAATGAGCAGCTCCGCACTGTGT-AGCAAGACAGATGGGACACACAGGCC--AGGTGACCGGT----------------CTTCCTTCTGATCTCA------ACATGGAACTAAGT------------------------CTTCCTGGGACACTGGGAGAGTGATCCCCTGCCCTCTTCCCAGGCAGCACCTAAGTACTGAGGTGAGAAAGGGTGCCCTGGCATCCTTAGAGG--GCAGGGATTTGCTCCTGCCTGTCCTGAGGCTTAACAAGGAAACAGTGAATCGGGGTTAGGATGACTCCAGGGACTCCAGGTC-TTCCCAGCCCCAAAGACAAGAGCTTTCATTTTCCTTTGGATATTCTA-----GGGTTTGAAACCTGTTCAAGATGGGAGCTTTATTAGGGAGTTTGATAGCTTAATTTAAGCCATTAACTGA--GACACATTTCTTCACTCCCAGGCTCT-TGACTGCGAAGGTGTTAGCCAAGTCTGTGAAGCCGGAGACTGTTGCATAAAAGCTGTTTTATGGCTTTTGTCTCAACTCTTCTGGAGCCAGGCTTGGCACAGTAGGAGAGTCAGAGGGAGGGTGCT-CTG--GGGAAGCTTGTGCCCTGCATCCCTGTAGTCTGAAGCACCCCTTCCTCTCCCTCCCAGCTGCACAGCTG---------CATGTTCCATCTCTCC------CACACTGGATGTACAGCCGAGGATCTGACTTCTGAGTCAGCCACACCCCTCTTCACTTAACAGAAAAATC-------------------------------------AGGGTCTTCGAAGATTTATCAAGTGATA
s HiC_scaffold_1 140034872 928 - 233722169 TCTGGCTTCTGTGCAGCCTTTTGATAAATGGAGAGAGGGAATCTGAGGCTCCTGTATTCCACAGAATTCATTT----------CCTATAGGGTACTTTTAGCACCATGTG-ACCATGGGGAGACCCTAGTGGGAAGCAGTCATTTAGCTGTGTGTTATGAAGAC--------CAAACAAACCCAAGGTGAGCAGTGATGCTCTGTTCCCAGCATCCTCCTGACGCCATGCAAAACTGAGGACAAAGTGTCCCTATATCTCTAGACACCTGCATTTCTGGGGCACTGGGAGAG-GATCCC-TACCTCCTTCCCAGGGAAGCTCTAGATACTGAGGCAAAAAGGA----CCTGGGCTCCCCAGAGAATGAAAGGATTTGTTTCTGCCTATCCTAAGCCTTAGTAAAGAAATTATGACTCAGGAT----ATGACTCCAGGGACCAAAGGTCCTTCGCAGGCCCAAATAgaagaacttttatttttctttggatgTTTTATTTATGGTTTTGTAACATGTCCAAAGTAGAAGCTTTATTACGGGTTTCGATGGCTTAAATTGGGCTGTTAACAGACTGATGTAATTCTTTCTTGCCAAGTGCTGTAACTGACAGGGAGCAAATC--TTCTGTAAAAGAGGAGCCTACTGCATAAAAGCCATTTTATGGTACTCACCTCAGCTCTTCTGGAGCCAGGCTTGGCAAGAGAGGAAGGT-GGAGGGAGGGTGCTGGTGATGGAAAACTTTCTACCTGTGTCCTTGTAA-CCAAAAAGCTGATACCTCTTCTACC---CTGTATAGTTGGTATTCACACTCACTTCATCTTTTATTTGTGCATAACAGAAGTGTAAC--GAGACAGAACTTTTGCCCTAGTTAGTCCCTCCCTCATTTAAACAGAAAATCAATCTTCAGGGGCCTTCCTCTCTCACAGGCATATTAAAGGGACTTAAGAGATTTATCAAGAGACA

a score=51007
s chr3            94936314 2072 + 160039680 CCCCTGTGGTGCTCTCATTATCTCTCCTTCACATACGAACTGTAAATTGAG---------TTACATAATTTG-CCAAGTTCCTATGACTGGCCAGGTAGGCTACGACAGGAATTGAAGTCAATGTTATGATCACTG-AGGATACAGGCTCTGCCTCACCTCCTCCAGTCCACTT---CCAAGTCATGTGA--------------CTCCACTCTTCCACCTCACCCTCATCAGAG----AtgggggactgggttgggggatgggttgggggtactgggCCAAAGTGATGGGGCTGAATTAGGGACCTGGGGCAG---AAGTGAGTCTG--CCTTGCCTGCCAGA--TGTGTCACAGGCTGCATAAAGAGAGAATCACACTCCAAAGCAGGCCCCAGCCAACGTGTTCCCATTATTTCTACAGCTACAAAATGCACAAAGTGTGGTCCAGGTTACTCCACCCCTCTGGAGGCCATGAAAGGTAATTGC---GAATCAAAGGGCCTGTGTCCCTCTGCAGACCCCAGGGTAGGGTTGGGGGACTGCAGATCTACCTTTAGCCCTCTGAT--------CCTTCCTGAGCTGCCTCTGCCTGGTGG---ATTACCACAACCTGCTTTCTACTTCCCAGGACCCCGAGAGGAGATTGTCTACTTGCCCTGCATTTACCGGAACACAGGCACTGAAGCCCCGGATTATTTGGCCACTGTGGATGTAGACCCTAAGTCTCCCCAGTATAGCCAGGTGAGGTGAAGCATGGTCACTAG--TGCCCCTGAGACTCCCACCACAGCCCCGG--------------TTCCCTACCTCCACCCT-TCTTTGTCCTC-------ACAGTAATGGAAGCTATTCATTGA-------ACAGGGTGCT----GAACTGAAACCCTGTCTATGCCT-------AGTCAAAAATGAGTCTGTAGAGGCAGGACCTGGGCAATCAGCACTTCCTGTCCTC-CATCCTAGGTCATCCACAGGTTGCCCATGCCCTACCTGAAGGACGAGCTGCACCACTCAGGATGGAACACCTGCAGCAGCTGCTTTGGGGACAGCACGAAGTCACGCAACAAGCTGATACTGCCTGGTCTCATCTCCTCCCGCATCTACGTGGTGGATGTGGGCTCTGAGCCTCGTGCCCCGAAGTTGCACAAGGCATGTCCTCTGTCTT--------TGTGACCCTATTG---------AACCTGCTGGCC--CAACAACCCTTAGACTAGCTGTCTCCAGATTTGACACAGGGTCTGGCTCAGCAGCAGGGAGGAAGGGCACACTTCAG--------------------------------------AGGGCTC-------CTGAACTGGCACCATCA----------------------------------------AGC--------AAGTTTCAAGCATGG------------------------------------------------------------GCTGGGA---------------------TGCCAG--------------------------------------------GAGAGGAGGTTTC---TTCTTTGAGCAGGGTGTCAGAGCCAGCT-----------------AGCTCAGGGCTTC-------------------------CTCTCAACAC--GTCATTGGATATCCATCCTCTGCACCAGATGCTCAGAGCTG-ACTGCTGAGGGTACAGAGCTAACAGTGGCCTCAGAGGGGCCCCAGGAGATGGGAGTGCCCTCAAGAGGGACGAGGGAATGTCA------ATGCTCTCTGACTGAAGACTTACTGGTGGTTTCTCTGCCTCTCTCTTGCTGGTCTCCG-AGTTACCAGACTGAATCTGTGCTGTCTTTCCTTAGGGAG-----------------AAGAAAAGGAGGCAGGGCCCACAGACAAAGCCAGGAGAATGACAGCAGGTAGTAGAGACTCCTGGCTCTGTAAAGTTCTGACCCTGTTCCTTAC-CTTCTCCAGGTCATTGAAGCCAGTGAAATCCAAGCCAAGTGCAACGTGAGCAGTTTGCACACCAGCCACTGCCTGGCCAGTGGAGAAGTCATGGTCAGCACCTTGGGGGATCTCCAGGGTAATGGCAAAGGTACCTGCTGGCACTGTGGACTTGTAAAATCTCAGCAGCTAAGAAGTGTGGAAGGCATCCCACTGTGTGGGGAACAGAACCAAAGCCTGGGGAGCAATAGAGTGAGACACCAGGGGGAACTGGCTGAGTCCTATCCAGCATCTAACATGTCATCGAGTGACATCAGTTGTTTCAGTTATTACTACAGTGATGAG--------GATGGGTCTGGTCATGGGGTATAAGTTCAGCT-----------------------------------ATTTTTTAGGTCATAgcagaaagatcaca--------------------------------agttcaaggcctgcctgggaaacttagcaagactttgtctcaaaatacaaaTAAAA
s HiC_scaffold_1 140046174 2473 - 233722169 CCCTGGTGGTGTTCTTATTCTCCCTCTTTTACAGAC-AAGTGGAAATGGAGGCCTGGGGGTTACACAATCAGTCCAAGTGCCCACAGTTGGTCCATGGTACAGAGGCTGAGAGTTAAATCGATGTCATAACTACTACAACACGCAGCCTCTGCTTCACTTGCCCTAACCCCTCTACCCTGGGTCCTGCTAGGGGGTCTTTCCCCTTCAGGTCTTCCCATCAACCCTGTACACAGTGCTCTGAGGGACC---TCAGAGAATAG----------------CCCAgcagtggggctggggcagggcccTGGGACAGTCCAAGCTGGCCAGGCACGTGTCAGCCAGGAGTATGTCACAGG-----TGGAGAGGGA-CCTCTGCCCTCAGTGAGCTCCAGCCAACGTGCCTTC-TTATTTCCACAGCTACGAAGTGTA---ACTGTGGCCCTGGCTACCCTACTCCTCGGGAGGCCATGAAAGGTAACTGCCCTGTGTTCAAGAAC-TGTGCCCCTC---AAATCCATGGCTAG---TGGGGG--TAGAGACCT-----CAGCCCTCTGACATACCAGGCCTGCCTTCACCATTCCTGCCCACCCCGCCATCCCCACTGCCTGCTTTCTACCCAACAGGACCGCGGGAGCAGATTATCTACCTGCCCTGCATTTACCGAAACACAGGCATTGAAGCCCCAGATTATCTGGCCACTGTGGACGTTGACCCCAAGTCTCCACAGTATTGCCAGGTGAGGCCAGGCGTGGGCACTGGCATACCCTTCAGACTCCTCCCT--GCCCTGGCTTctgtgcttcttttctctaattccatCCTCTTTTTGTCTTCCCTGGATATGGCTGTGCAAATGATTCACTGATCGTCCCGCAGGATGAAAGAAGGGCTGAAATCTAGGTTGTGTCTCAATAGCAAACTAAAATG----CACAGAGGCACGGCCTAGGCAAGCACCACAACTTCTCCTTTCATACTAGGTCATCCACCGGCTGCCCATGCCCTACCTGAAGGATGAGCTGCATCACTCAGGATGGAATACCTGCAGCAGCTGCTTCGGGGACAGCACCAAGTCACGCACCAAGCTGATGCTGCCCTGTCTTATTTCCTCTCGCATCTACGTGGTAGACGTGGGCTCTCAGCCCCGTGCCCCAAAGCTGCACAAAGCACGTATTCTGCCTCACCAGCAGGGAGACTATACTGTACCCCAAAAACCTGTAGGCAGGAAGCTGCCCCTAAACT-GCTGCCTCCACCTGTG---CAGGATGCAACTCCGCAGCAGGGAGGGAGGTCAGAATTTAGAAAAGGATCACCAGCCAGATGTGCATACCTCTagtcccagcgctctgggaggctgaagcaggaagatcacaagtttgggtCCAGGCTAGGGAACTCAGTGCTtcgtgagagcttgtctcaaaattttaaaaatagtaattttttaaagggcCGTGGATGTAACTCAATACAAAGGCCCTGCGTTCGATCCTCAGTgctggggaaagaaaaaaaaaaacagggttaCCAGGCATGCTGAGCTTTCACCATGCAGTACGTTGGCccaggggaggagggaagaggcttCCGGTCTTTCTCAGAGAGTGTAAGGACCAATTTCCCCCACCCATCTATGTACTAAGGGCTTCACTGAAGCACAACCTACAATCTTTTCTCCCTACACTTGTCTCTGTA---CCAT-CTTGGTACCAGACATCTGTGGTGGTGCTGCTGGTGATACAAAGCTGACACTGGCATGGGGCCTACCCTATAAGACCTT-GTGCCTTCAGGATAGAGTGTGAGGTGGCAGAGGGGGTGCTTTCGGG--GGGGGGGTGTTGGCAgtgtctttcattttcctttgctgcttatagAAGCTCCCAGACTGAGTCTTTGCCATATTCCTGCAGAGAGTTGTAACCATGTATGGAAGGCAAAGGGGACAAGGGCAGCATATACAATACGGAGTATAGAGGCAGGCAGTGGGGACCCTCAGCACTGTAAAGTTCTGACCTTGTTCTTCACTCCTCTCCAGGTCATCGAGCCCCAGGAGGTCTATAACAAGTGCAACTTGGGCAACCTCCACACCAGCCACTGCCTGGCCAGTGGGGAAGTGATGATCAGCTCCCTGGGAGACCCCAAGGGCAATGCCAAAGGTACCTGCTAGCACTAGTTGCTCACAAAA---CTACAACTGTGGAACCTGGGCAGAATATCTCTGTG-AGCAAGCAGGTCC-AAGTTTGAAAAG-AGGAGAATGCCGAGCCAGAGGAA-----------TGCAGCCAGTATTTGAAGCGTTAGCAAGTAGCTTCAGTTCTTTCAATTATTCCTATGAAGATAAGCCTTAACTAATGAATTTAGTTAAAAGGTAGAGAGCCagcttggtgtggtggtgcatgcttgcttgtaatcccagcacttgggaagctaaggcagaaggattgcagcAAATTTGAGGCCCATttgaagtacatagtgagttcaaggccagcctgcactacatgatgaggc--tgtctcaagaaacaaaacaaa

a score=29764
s chr3            94939627 770 + 160039680 CCCCTTTTCCCTGCTCAGGGAGTTTTGTGCTGCTGGATGGGGAGACCTTCGAGGTGAAAGGGACATGGGAGAAGCCTGGGGATGCAGCTCCAATGGGCTACGACTTCTGGTACCAGCCTCGACACAATGTCATGGTCAGCACTGAATGGGCAGCTCCCAATGTCTTCAAAGATGGCTTCAACCCGGCTCATGTGGAGGCTGGTGAGAATCACCCTAAGGGCAGGCGAGGGTTCACAGCCCCTGCTTTCAGCTCTCTA-----CCCTACAGCAGATCT--------GCACTTGTCTTGCTTAGGATGCTCAGATCTGCTCAGGAGTCCTCTGTGCCCATTCCAGCTCCCCATCCT--AGCTGGCACCCTG---CCCCGGCCCATGCCCTCCCACCCTGACCTGAGCCCAGCCTCTGGTCCCTGTCCCCTCCCTGCTCAGGGCTGTACGGGAGCCGCATATTTGTGTGGGACTGGCAGCGCCATGAGATTATCCAGACCCTGCAAATGACAGATGGGCTGATACCCCTGGAGATCCGCTTCCTGCACGACCCAAGTGCCACCCAGGGTTTTGTAGGCTGTGCCCTCAGCTCCAACATCCAGCGCTTCTACAAGAATGCGGTAACTTTGACCC-CTGCCTTCCACCCCACCCCCAACACTCAGCTATGAGAGTCTCTCTCACAAGCACCTCCTCCCAGACTTCAGTG------CCCATGGTTGTTGGCCCCACCAGCCAAGGCTTCCCCAGGAAGCAACGCTGCCTGCTCTCT----GTGCCGGGCTAATTTCTACCTTGCC
s HiC_scaffold_1 140048956 749 - 233722169 ccttcctttcctgctcagGTGGTTTTGTGCTGCTGGATGGGGAGACTTTTCAGGTGAAGGGGAATTGGGAGCAACCTGGGGGTGCTGCACCCATGGGCTATGACTTCTGGTACCAGCCTCGACACAATGTCATGATCAGCACTGAATGGGCAGCTCCCAATGTCTTCAAAGATGGTTTCAACCCTGCTCATGTGAAGGAAGGTAAGAATC-CCCTA--------TGTGTGCTTTCTGCCCCAAATTCACTTCCTCTAGTGGTCCCT--AGATACTCTGGGTTATGGTACAGGACGTGCTGAG--TGCTCAAGCTTGTGCAAGCATCCCTTCTGCCCTAGCCAAGGCCCCAGCATACACCCAGCACCCAGCAACCCCAGCCCCTAC-------CCCCAATCTGAGCCA----------CCCTCCACCCACCCTACTCAGGCCTGTATGGGAGCCACTTACACATATGGGACTGGCAGCGCCATGAGCTCATACAGACCCTGCCTTTGAAGGACGGACTCATTCCTCTGGAGATCCGCTTCCTGCATGACCCAGATGCCACGGAGGGCTTTGTGGGCTGTGCCCTCAGCTCCAACATCCAGCATTTCTATAGAAACAAGGTAACCTGCACCCTCCAGCCTCACCctcacccctgcatcccagct------gtTTTGTCCACA---ACTCTGTCCCCGATTCCAGGATGATGTTCCCTGGTTCATGG--GAATAAAACAAGACC---------ATGTGCCCTGCCTTCTTTCTCTTGATGCTCAGCTAATTTCCACCTTGTC

a score=20617
s chr3            94942443 412 + 160039680 CTCTCCCTTCCCCAATGTAGGAAGGCACTTGGTCAGTGGAGAAGGTGATCCAAGTGCCCTCCAAGAAAGTGAAGGGCTGGATGTTGCCAGAAATGCCTGGTGAGTGCCCACTGGAGAGGGCA--------GGTTGATTCCTGGCCTGGGAAGAGAGATAGACTCCTTACAGCCCCTCAATCCTGCTTAGGTTTGATCACCGACATCCTGCTGTCCCTGGATGACCGCTTCCTTTACTTCAGCAACTGGCTGCATGGGGACATTCGGCAGTATGACATCTCTAACCCACAGAAGCCCCGCCTCGCTGGGCAGGTAGAGGCACTAGCAAA-----------------------AGCTGCTTGGGGCTG---ATAAGG--------------GAGAAGCAGGAAACGCAAAACTGTGGGC-----AAAGGAACAGGCCCAGGACTGAAG-AGCCATGGCTGAACACAGG
s HiC_scaffold_1 140049827 455 - 233722169 CCCTCTGCTCCCTGGTGTAGGAAGGTAGCTGGTCAGTGGAGAAAGTGATCCAGGTGCCCCCCAAGAAAGTAAAGGGCTGGATGCTACCTGAAATGCCAGGTGAGTACTAAGAGGAGGATGCAAATTGGGAGGTTGATTCCTGGCCTGGGAACCAAG-------CCT--CTGCACCTGTATGC--CCTAGGCTTGATCACTGATATCCTGCTGTCCCTGGATGACCGCTTCCTGTACTTCAGCAACTGGCTGCATGGGGACGTGCGGCAGTATGACATCTCTGACCCACAGAGGCCCCGCCTCACCGGCCAGGTGGGTGTCCtagaaaaataaggagaaagagTAAAAGGAGAGCACTGTGGAGATAGGTAGAAGGTGTAAAGTGGCCGTGAGGAGCAGGAAGAGCAAAACCATGGGCTACAGGATGGTGTAGGGTCAGGCCTGGGGAAGCCATGGCTGGACACAGG

a score=39958
s chr3            94943806 1101 + 160039680 TGTCCCCCTTTCCCTCTGAACCCTGCTTCCAGATCTTCCTTGGGGGCAGCATTGTTAGAGGAGGCTCTGTGCAAGTGCTGGAGGACCAAGAGTTAACCTGTCAGCCGGAGCCCCTAGTGGTCAAGGTGAGAACTTCTCCCTG----------CTCCCTCAGAGTCATGCTC-----------------GAGAGTATCTCCTTGGA---TGCTTTGGG-ATCCAGCTGGTATGCCAAGTGGGCACCAGTTGCTTAGGCCATTTGGGGGTTAC--TTGGAGTCTGACCTCTTGTTTCCTCAAGGGAAAACGAATTCCTGGAGGCCCTCAGATGATCCAGCTCAGCTTAGATGGCAAGCGTCTTTACGCCACTACATCACTATACAGCGCCTGGGACAAGCAGTTTTACCCTGACCTCATTAGGTGAGAAGCAGTGTAGGGCTCATTTCTCCAACTGTCCTCTCCCACAAGCATCACTTGGCCTTCCGAAGACTCATCAGGAACTCCATCTGTACCCCACCATACAGATGGCCCA--CGGACCCTGTCCCATCCCCAGGAACCAA---CTATACTCACAAAATCTTGGGGTGTGGGGTTGGCTACATAcaacttctagcttacct--cctcttctcttctagggaaggctccatgatgcttcaaattgatgtagacacagtaaatggagggctgaagttgaaccccaaCTTTCTGGTGGACTTTGGGAAGGAGCCCCTTGGGCCAGCACTGGCTCACGAGCTTCGTTACCCAGGGGGTGACTGCAGTTCTGACATCTGGATCTGAAGGCTCGCACTAGGGGCCCCCCTCCACATTCTGAGCCT------------GCCTGGCTTCACTCTGCT----------CTCAGCC---------CCAACTCTCCAAGGCCACTCTGAGACCAGCGAGATCTGTAGAGCAGCATCTCTGT---------ACCGTTGCTTGTTGTT---TGTGCTT-TTCTTAAGTGAGCTCCTGGAAGCACCAAGAAATAAAATGCTGAAACTTCTCTCAGATCACTCTGTGACGGAGGGGGAGTGGGT---TGGGTCCTCTGCCATGGCCAGTTTCTTGTGTAGAGAAGCCCTGAAGGGGGTTGTGGTGACTAGT----GTATGCCAGTGATTCCAACATAAGGCCAATGCTGTCAAACATTTCTGTTCT
s HiC_scaffold_1 140050358 1153 - 233722169 TGTCCTCtacacctcctcctcctcccctccagatcTTCCTGGGTGGCAGCATTGTCAAGGACGGACTGGTGCAAGTGCTGGAGGACCAGGAGCTGAACTGCCAGCCAGATCCCCTGGTGATCAAGGTGATGCCCCCTTCCTGTCCTCTCAGGCCCCCTCAGATGCAGGCTCAAGGGGTGAAAGGATAAGGGAGCATAGCATAGGAACATGCTTTTGGTATCTGGGTGGT--GCCTA---------------TAATCCCCTCCTAGGATTACCTTTGGGGTCTGATACCCACTTTCTTCAAGGGAAAAAGGGTGGCTGGAGGGCCTCAGATGATCCAGCTTAGCCTTGATGGGAAGCGTCTCTATGTTACCACATCACTGTACAGTGCCTGGGACAAGCAGTTTTACCCTGATCTCATCAGGTAAGCAGACTCCCTGGGCTCACCTCTCCCACCTCCTTCTCCCTGAGGGATTACATAGCTATCTGAAGACTCCTGGGAAACTCCACCTGCACCCAAACCTACAGATGGTCCACTCAGACCCTGCTCCTTCCTCAGGAACCCATCCCCACATTCACAAATCTCAGGAGT----GGGTGACCTCTTCTGATCTTTCCCTCATCCTGTCCCTTTTCTACCAGGGAAGGTTCAGTGATCCTGCAGGTCGATGTTGACACAGAGAAGGGAGGGCTGAAGTTGAACCCCAACTTCCTGGTGGACTTTGGGAAGGAGCCCCTTGGCCCAGCCCTAGCCCACGAGATGCGCTATCCAGGAGGTGACTGCACCTCTGATATCTGGATCTGAAGTCCACCACTCAGAA-CCAGCTCCACGCCCTGAGCCCTTCCTTTCCAGGGCCTAGCTTCACTCTGCTTTCTCCTGGCTTCAGCCCATGGCAGTCTGTCTTGCTAAAGCCAA-CTTACAACAATGAAACAAACTGAGTggcatttccttttcttgtccaCTGTTGCTTGTAGCTTACTGTGCTGATTTTTATACAAGTTCTTGAAAGCACCAAGAAATAAACTAGTAAACCTATTCTCAGATCACTT--------GGGGGAGGTGGGTATGTGACTCCCTTCTCCTGATTAGAAGACT-----GAGGATTCC---AGGGTATTAACATGACTAGTAATAACTAGCCAGTAACTTCTACATGATACTAATGATACCAAAGTCtcatattct

a score=61064
s chr3            94953811 1675 + 160039680 AAGCAAAAGACCAGAT-GCTCCAGAAGCAGCCAAGCGCCCGGGCTTTCATCCTGCGGTCCCTTTAAGAACAGAACCCTTTCCGGGCCCGCAGACCTAACCGACCCCAGTTTTAACCGAAACCAACCTGGACTTCCCCCTCTTGACTCAAATAAGACTAACTTTGGATTTTCCCTCCCCTCTCGACCAATCATATTCTGTTACCAGGCAGACTTTCAC--------------------TGCCTTCG---TCTTGGAGGCAGCAACGGCCAATCACAGAGCAGGCCGTGCGTGTATCCAGGCAGATCGCGGCTGGCATAACCATTCAGAAAAAGGAAAAATAAAAGCAACGCACGAGCCCGCCGGCTGGGCACCGTGGGGCTGGGCAGGAGCTGAGGTAGCCACAGGGTAGTTTCTCTTTCTCTCTCACCTAT-CTAATGTCCGTGCTGGAAGGCGACGGTTCCGAGGTAGGA--GGGGCAA-CAGCACTCCGGAGCTAGCAGGACCAGCT-----------------------CCTTGCCCCTGCGCACGTG-CCCGAATCTGGGAC--CCTGTTCCCCGCAGGGTTTCCTGCGCCCAGCCCCCTGAGTTCGGAGACCTAGCCC-------AGCA-CCTGGGGTTGGGGTGGAGGGGCCCGAGGGGAGTGGGG--ACGCTTCGGAGTGGGATGTCGTGG--GATGACGTAGGGTCCGCGCCGCGGCGAGGGGG----------------------------GCAGCGGGGGAAGCCG-------TGGCGAGACTCAGTAATGAGAACTTGGGCCCAGTTTT--TTTCAAACCTGGAAAGGCCGAGTATG-TTTGTATCCCTTCCGACCTTCCAGGCAAAATCAATGGCGAGGAGTCTATTAGAGGATCGGAGAACTTTGACTTGTCGTTATAGGTGTTGAGGGGGGGCGGCTGGAGGGGCTTGGGGGGGGGGGGGCTGGAGGTGTTGCAGCACTGGGAGAAATTGTAAGATTTCTTTTAACGTGGACTTCTCCACCCCTATCCCTTCCCATAACAGTTTTCCAGATTTGGGAGACTTCA-AAAGGTGGGACATATAGAATGGAGATGTCAGAGATCTCTTTGGGTATACAAGGGCCTGATAAAGTAACAGAATAATTCTAATTTTAG-AGAAGGC--AAGTGGTGTGGAAA--ACCACTGGA-------GGAAGCTTTGCTTCTGTT----TGTATTTCTGGGTAGAGACAGGAGGACTGCCTTGGGGTCTCTAGGAGAAAGGAAGCT-TGGTAGTAGTTAAATCCTCA-GCGATCTCCTCTCTCAGCTGTAGCCCTCATGCTGGGATGGCAGAAGATAAACCTGATGCTAAGAGCCCCAAGACTGGGGCAAGG---CCCCAAGGTGGTGCTGACGCTGGAGAACCTACCACCCTCCTCCAAAGGCTCCGAGGTACCATTTCGTAAGTAATTGTCTCTGTCTCCAAACCCTGTTCCAGACCCAGCTGTAGATCCTTGTTGCCCTGCACT-------------------CCTTCCTCAGGCAAGTGTTTCAGAGCAGGCAGGCTGAGGTCTGTGGTCCGTAGCTGTTT----GGTCCTTTTTCTGTCTCTAGCAGTCAGAC------------AAAGGGATGGGGAAACCT----TGTGACCTCCAGCTTTCTCTTCTTCTCCACAGCAAGGCCGTGCAGAACAAAGTAGAGGGAATTCTGGTAAGCATGCTGGGAAG-GGACAATACA--GGTGCCATCGCTGAAGGGTAAGGGTGATGT---TGATGTGAGAGAATAAAGGTTCATGGGGGAGAGGCGGTGCTGTC
s HiC_scaffold_1 140062318 1758 - 233722169 AAGACAAAGACAAGAAAGTTCCGCTAGCTGCCAAGCAA--GGGTTTGCGTCCTGCGGTCCCTTTAAGAGAAGAACCTCTTG-GGACCCGCAGTCCCTACCGACCCCACTTTTAACTGAAACCTAAACGGACTTCCCCCTCTTGACTCAAATAAAACCAACTTTGGATTTTCCCTCCCCTATAAACCAATCATATTCTGTTACCAGGCAGACTTCAGCAGCCGCCTGTGTGAGCCCGGCGCCTTCGGTCTCCGGGTAGCAGTAACAACCAATCACCAAGTAGGTCGTCCGTGTATCCAGGCAAATCGCGGCGACTACAGCcattcagaaaaaggaaaa--taaagcaacgCAGGAGCCCTCTGGGCCGGGACCGTAGGGCTGGGCTGGAGTGAAGGTGGCTACGAGGtagtttctctttctcccttacCTTTATTTGTGCTTGTGTTGGAAGGCGACTGTTCAGAGGTAGGGATGGGGCGATCTGAGATGGGAAGCGAGCAGAAAAAGATGCCGGCAGTATTTTCAACGGCTGCTTCACCAATGTGCACGTGCCCCGAATCTAGGACCTCTTTCTCCCTGCCGGGTTCCCTTCGTCCAGCCCAGTAGTTCCGCGGCCCGAATCCCCCAAGAAGCAGTCAGGGATTgaagggctgggggctgggagagGTGGGGGCACGCGTCGGGATGGGCTGCTGTAGGTGATGACGTAGG--CGGCGCCGTGAGGAGGGGGCGGTGCTGTGAGGAGGGGGCGGTGCTGTGAGGAGGGGGCGGCCGGGAGGCCTGGCGACATTAAGTCCTGTCGATTTGGGCCTGGTGTCCACCCCAAGCGTGGAAAGCC-----atgctttctctccttcctgacCTGCCAGGCGAAATCA----TGATGAATATATTTGAGATTTAGAgaactttgttttgtgtttgt---tgttt-ggGGGAGCAGC-----------------GTGGGGGTCAGA---------------GGAGAAAT-----GAACATGTCTAACGTAGATGTACAGtcccccttctcttcc-----------tttaCATTTGGGAGACTTCAGAAAGCTGGGGCAGATAGTATGGAGATGGCAGAGATCTCTTTGGGTATA-ATGGGCCTGGTGAAATA--GAATTATTTCTAATCTTTGCAGAAGACAAAAGTAGTGAGAAAAAGATCACTGGGAAGATTTGGTGGCtttgtgtctgtttctctgtctttctgggtAGAGAGATGAGAGCCGCGCTGAGGTCTT-----GGAAGAAGACTATAGT--TCATTACATCTTCATGCTCTGTCCTCTCTCAGCTCTAGCCC-CATGCTGGGATGGCAGAAGATGAGCCTGATGCTAAAAGCCCCAAGACCGGGGCAAGGGCCCCACAAAgtggggctgaggctggagaaccTACCACTCTTATTCAAAGGCTCCGAGGTACCATTTCGTAAGTACCTGTCACCACCTCCAAATCCAGTTCCAAACCTCTGTATAGTTCCCAATACCACTTCACTTCCTCTGAAGATGCGCTGCCTCTCCACAGCCAAGTACCTTAGAGCAG--AGGGGGATTCCT----TCTGTAGCAATTCTTAAGGCCCTCCTAGGCATTTTAGCATACACACACAGCAACTCAAAAAGGGCTGAGCAAACCTTGTGTGTGACCTCCAGCTTTC---TCTTGTCCACAGCAAGGCCGTACAGAACAAAGTAGAAGGAATTCTGGTAAGCACCTTGGGAAGAGGGCAGTAAAATGATGGCACTGGTCGGGGATAGGGATGGTGGGGATGATGTGGGTAAATGAAGGTTTATATGGGAGATGCACTCTTGTC

a score=158600
s chr3            94955712 6587 + 160039680 [encoded data, 7419 characters]
s HiC_scaffold_1 140064814 6361 - 233722169 [encoded data, 7419 characters]

a score=4592
s chr3            94955742 89 + 160039680 CAGCAAGAAGTACAGAAATTCTCGGACAACGACAAGCTGTACCTCTACCTTCAGCTCCCATCGGGGCCCAGCGTTGGCGAGAAGAGGTA
s HiC_scaffold_1 186726643 89 - 233722169 cAGCAAGAAGTTGAGAAGTTTACAGACCTAGAGAAACTCTACCTCTACCTTCAGCTGCCTTCTGGTCTCAGCAATGGAGAGAAAAGGTA

a score=14408
s chr3            94972724 421 + 160039680 AAGGTCACCACCTCTTGATAC---------AGCTGGTTGGAAGCTAGCCAAGAACTGTGGGTCCTATCAAGTGGAATGGGGATCACCTAGCCGAGACCCACAGGGACAGAGTGAAACTCTCTTTGGCA-CCCTGTCGCTCTTCTTTGCTTATCTTCCATCACTGCCCCTCACCCCCAGCCTAGTTTATCTGTTTGCCCTGTCCTGATGATCGGAAAAGATTCCCATTTCTATTATTCAGCACACATTGTCTTCTTCCCTCTCAGAATGTTCT----------TTCCCTTTTATCCCACTGTATA----------------CTAGGTTCTGCCTTGCAATATTCACAAAAAGTCTTCCA-----CTGTCCACCATATACTATGCAGCCAGGCCTTCTGTGCAGATTTAACAAGGGTCTGCCCCTTGCCTCCAGCAAACAAGAACTCCATTTGTTCTACTTCTG
s HiC_scaffold_1 140076535 456 - 233722169 AAGGCTGTCACTTCTTGATACTTGCATGACAGCTGGTTGGAAGCTAACCAAGTGCTGTTGGTACTGACAGATGGACTGCTGATTCCCCAGCCCAGACCTGTGGTCACAAATTTGAACTATCTTTGGCATTTCTGTCGTCTTTCTCTATTCATCTTTCATTACTGTACTG---CTTTAACCTAGTTTATCTGCATCTCCTGTCCTCATAATTTAAGCAAATTCCCATTTCTCTTCTTCAACATACA---AATGTTTGGCCTTCAGGATGTTCTCAActctatcttcttttttattctgcTGAATAATATCCAGTATCACTTCTAAGACCTGGGTCACAATATTTCTAAGGagacttccatttatttattcacccTATACTGAGATGCTAGGCCTTTTTTAACAATTTAACCAAACTCTGCCATGTTCCTTCAGCAATTAGGTACCCCATTTGTACCAGTCATG

a score=109530
s chr3            94973755 4828 + 160039680 [encoded data, 5676 characters]
s HiC_scaffold_1 140077241 5089 - 233722169 [encoded data, 5676 characters]

a score=278938
s chr3            94981499 9125 + 160039680 [encoded data, 10198 characters]
s HiC_scaffold_1 140084795 9393 - 233722169 [encoded data, 10198 characters]

a score=65023
s chr3            94992081 2574 + 160039680 GTGGCTCTCTTGGTAAAGGGTCCCTGTCATAGACAGGCTTAGACT---AATAGAGCTTTTCCTCATGTCT----GAGTCCATCTTTCTCCCTACCCTACCTTAGTCTCCAGTC---TTGACTTTGGCCTTTCTGGGAACTGCTGTAATACCTGACAGGAGGAACCAAGCTTA-----------------------------------------------------------------------------------------------CCACAGGGA----ACTCAAATGGGGAGCCTAGTCTCTTGAGAGGGAGAGGAAGAGAAGAACTCCAGGAGGATTTGCTAGAGACAAGCCTTTAGAAGGGCCACCAAGAGCTAAAAGGAGCTGTTGCTTTCTCCATCCACCTATGGAAACCACCCTT-------CACCTGCTTTTCT--CCATGGAGTATG------CCCTCAATAAT----AGTTTGCTCATCCTCTCTCCATCCCCTGCATGTGCACTTAGCCCTTACAAGAA--TGTGGGTTG-----GGGTGTG---TGCCATGGAGAACAACAGAAGTC-TTGGGATGAAGAGCATCTTCCGTTTCTGAAGGGGAAAATACTGATTTAG--------------GCCCCTTA--CCATGGCAGAGCCCCTCAGCACAGATCCAGCCTGAGGGCCCAGAT------------------------GGGATGAA----------------------CTCTTCTGTCTGAGGTCCTGGATGGCTTTTTGAGACCTTGTCCTCTTGCCTGAACTAAAAGGTTTTTGAG-----AACTCAAGTCCAAGC--AAAGGGTTCAGTCCCAGTAAGCTGAGTTCAGGTCATCTTGAGTCCCCAGGAAGCCTTCAGAAAGGGGATGT--GTTCTTCCCAATTCAAGCTAAGAAAAGTAGGATAGAAACTCCTATCATGGCCAAAGGTAGCTC----CTTTCCTGTGGTTCTTTATATACTAGAGGCCCTAGCCAGAAGGAAATAAGAGGGATAATCCACTTTTTTCAATGTTTCCTTTACCATC-TTTGGTTTAATCTTAACCCTCTGTAGCCTGTCCGGCTGGCCCCTGAGCGAGAATTCATCAAGTCTTTGATGGCAATCGGCAAACGGCTGGCCACGCTCCCCACTAAAGAGCAAAAAACACAAAGGCTGATCTCAGAGCTTTCCCTGCTCAACCATAAGCTCCCTGCCCGAGTCTGGCTGCCCACGGCTGGCTTTGACCACCACGTGGTCCGTGTGCCCCACACACAAGCTGTTGTTCTCAATTCCAAGGATAAGGTAAGTGGCTCTCACCCAGACCCTTCCCCTCACCTGACTGCATTTTCATGATTGCTCAGGCATTGTTCCTTACTGGTATGTTAGAGACCTTTTTAGTTTATGGTGCATGTGCTAAGAGTGACTCATTGCTCTTGTGATGC-TGAGAACCCAAGGACCCTCCTGCCCAACTTCTTGAGTCTTGGTTTTTTTTTTttttggtttttcgagacagggtttctct--gtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaggcctgcctctgcctcctgagtgctgggattaaaggcgtgggccaccacgcccggctTGAGTCTTGTTTTTATGGACCAAAGTAGCCTAATAATTTCAGTTTACCTTGTGCTAAATTGAGGGCAAGTGGCTTTTCACATACTCCTTACCCTCCTTTTGGTAGGCC--CTCCAGCCTTTCTCTAACTTTTAGCCTATCCAGGCATAACCACCATATATGAAAGAAA----AAAGTTTATAAGACTTTTTGATCAGAGAGGGCAGAAAGG----------------AAAGAAATACTCCCAATTCTTACTATG-TTGTCTGTGTACTGGAGTGATGTGATTGTCCT-CATGGTTCATATTCTCTCAGAG---GAAGTATTGAAAAAGAGGATTT----TCCTTGACATACATCTCACTTTATCC-----AGTTT-----------GTGTGTCTGCTTTCCTGGGCCCTGACCTTAGCATGAACCCACAGA-GCTTCTAGGCCTCTCTGTAAGACTGTCATTGATAGTGGGAACAGTTTTTCCCAGTTGCACCTGTGCCTTCTGAAGCCCTGATGATAAGCTCAG-AGGCATGTACACCCT-TTACCC-------------AGATGGAAT---ACAAGCTCCTAC-CTGTGCATGTTTTCCATGGTCATAGTGGACTGCT-GATGAAGGTTGG--------------AACAGAGAGAAC--TGTCAGTAGAACTTAGATAG-----GGAGGTAGTGGCAAATGC---TCTCTCTTCTCACCCAGGCTCCCTACCTGATCTACGTGGAAGTTCTCGAATGTGAAAACTTTGACACAACTAGTGTTCCTGCCCGGATTCCTGAAAACCGAATTCGGAGTACACGGTCTGTAGAGAACCTGCCTGAATGTGGTATCACTCATGAGCAGCGAGCTGGCAGCTTCAGCACTGTGCCCAATTATGACAATGATGATGAAGCCTGGTCAGTGGATGATATAGGCGAGCTGCAAGTGGAGGTGAGGGATCTCCAAGGAGATAATCCTAGGGGCACAGCCCCTGTTCTCTAGGAGCTTTTAATACATGTGA---ACTAACACACCTGTTAACA------GAGCGAG-GCACAAATTTGCATGAATATTGTACATAGTAAGGGGTATGAGAAGGAAAAGCTCTGAGTAGCT---GGTTGGAATAGGTTCAA-----GCTCCTCTTACAGCAGGAGTTCAGGTTGAATGTAAGGAG---------GACCTAG-------GGGAAACTAAT--AAAATATTCAAGGAACACCTGCTATATAAAGTTG
s HiC_scaffold_1 140094350 2694 - 233722169 GTGGCTGTTTTGGTAAAATGCTCCT----TATGGTGGAGTAGACTGGAAACAGAGCCCTTCTTTATGTCTAGCTGAGTCCATCCTTTTCCACACCCTGTCTTACTCCCCCTCCGAACTGACTTTATCTTTTCTGGAAATGACCGAAGGGCCTGCCAAGAGGAGCCATGCTCAGAGAGGGGCACTCCTTCTACCTTTGTATCAGGGattccaactcatgacctcatgcttaccaggcaagggcttgtgccactaagctaaatccttagccccagGTAGTACACTCTTATGAGGAGCTGAGTCACT-GAGAAGTAGAGGAAGAGGG---TCTGAGGAAGAATTATCCAAGACAGGTCTTCAGGGCCACTATCAAGGGTTAAAAGGAGCTATTGCTTTCTCCACCCCCCTACCCGTTCCTCCCTCACCACTCCATTTGCTTCTTTGCCCACTGATTATTGGTTATTCCTCATTAATGCAAACTTTGCTCATT---TCTTCATCCCCTGCATGTGCACCAATCCCTTATAAGAAATTATGAGATGAATGAGGTTGTGGGTTGCCATGAAAAGCAACA--AGTCATTTGAACACAGAGT-TCCTCcttctttgaaaaggaaaatactgGCTTAGAGCTACCTTCACAGGCCTTGTAGGCCCTGCCAGA-CCCCTCAGTCCAGATCCAAGCCAAAGACCCAAGTTTGGACAGGGACAACCCTGTTCTTGAGATGAGTGAAACACTCAGGTATAAGCAGCTCTTCTTTCTG-GGCTCTGGATGACCTCT-----------CCTAAAGCCT---CTGGACGGTCCTTAAGTCTTAGACATAAGTCTAAGAGAAAAGGGGTACATTCCAGAAACCTGGACTCAAGGATCCCTTATTCTTAAGAAATAGACTGGGAAGACTGTGCTGGCTGTACTCAGTTTGAGCTCAGAGGGACAGGGTAGAATCTTCTACCATGGCAAAAAGTTtctctaggctttcttggggttCTTAGCCAACAGG--------GCTAGGAGTAA-TAGAAGGTGTGAACCActtttttctatagttttttcACCATCATTTATTTTCATCCTAACCCTTT--AGCCTGTCCGACTGGCCCCTGAGCGAGAATTCATCAAGTCCTTAATGGCAATTGGCAAACGGCTGGCCACACTTCCCACTAAAGAGCAGAAAACACAACGGCTGATCTCAGAGCTCTCCCTGCTCAACCATAAGCTCCCTGCCCGCGTCTGGCTACCCACTGCTGGCTTTGACCACCACGTGGTCCGTGTGCCCCACACACAGGCTGTTGTCCTCAACTCCAAGGACAAGGTAAGTGGGCTTGGCCCAAATTCTATTGCTGACCTCAGTCTGCTCCCATGAATGTTCAGAT---------------------------------------TTGTGTATGTGCCCAGAA---------------GTGGTGTGCCAACACCCTAGGCCTCCTCCATCCA---------------------------------TGTATGAGCTGGACTCTACCTTAGTGCAGCCGTAGTT--------------------------------------CTCAGGGGCCT---CCTGTTCCC--------------------------------------CTTGGGCTTTGCTCTTCTGGATCAAACAGGCCTCAACTTTTCAATTTGCCTCTTGCTGTTTCTCAGGAGAATTGTTGTTC----ACCCATTATAATCATTTTAGTGGCTTTGCTTTAGCCCTTCGGTAAGGGATGAGTACTCCAGgttcagatttttctttcagaGGAAGTGTTGAAGATTAGAATCCTCTTTG-TGATACTGCCTAGTTTGGTCCAATCTTTTTGTCCACAGAAGTTCCCTGGACCCtgtctttatttgtttgtttattgga--gacagggttttgctatgtatttcaggctggctttgaactcactatgtagcgcaagctggcctcaaacccaagGCATTCCTattgccttagccttccaagtgctgggattagaggtgtgtaccATTACCCCAG-CCTGTCTTTAGGACAAGCCAACCGAGGCTTCTAGGCCTCTCTTCCAAGCTGTAATTGATAATCGGAACAGTTTTGCCTGACTGCA-TTGTGCATTTTAAAGCCCAGATAAAACATTTAGAAGGCTTGTGCAGTCTCTTACCCAAATTCTTGATATAGATAACATATGACCAATTCCAGCACTAAATGTGGTATCCATACTGTTAAGGGGCTGGTAGATGAAGGTTGGAGCTAGGAGTGGGCAGCAGAGAGACCTGTGTGAGCAGAGTAGAGATGGTAGTAGAAGAAAGCTACAGATGCTGTTCTCACAACCCCACCAGGCTCCCTATCTGATCTATGTGGAAGTCCTTGAATGTGAAAACTTTGACACTACCAGCGTCCCTGCCCGGATCCCTGAGAACCGAATCCGGAGCACACGGTCTGTAGAGAATCTGCCTGAATGTGGTATCACCCATGAGCAGCGGGCTGGCAGCTTCAGCACCGTTCCCAACTATGACAATGATGACGAAGCCTGGTCGGTGGATGATATaggggagctgcaggtggaggtaAGGGAGCTCCAGAATGATAA-CGTTGGGGCACAGCACCTGATCCCCA--AGCTCTTACAGTTCGAGACTCAGTAACACACCT-TTGGCAGGAGGTGGGTGAGTGCCCAAATGAGCA--AGTGCTGTAGGCATTGCAGAGTATGACAGG---AATCACTGAGCAGCTATAGCCTGGAAGAGATTCGAGTGGGGCTTGTTTCCCTGAGTGAGTTCAGGTTAAATATAAAGAGTAGCTTCTAGAACCAGGGAAATAGGGAAACTCATTGAAAATATG-ATTGAATCTCTGGTGTAGAAAATTG

a score=30472
s chr3            94994832 1869 + 160039680 AGTACTATATGCTAatgaatgagacttggcttatacttgtaagag-tttatgtgctaacagaatcagaccagacagctg------acagttctagtctggtgtaatctgcgctgtaacagggagcatgagacattctggaagtgcctaaaggtggagagagtgcttactccacactcagcatcagaatcaaaagatttcctggaggaagtgatatttctgctgaggctggaagcatggtttaattagcagaacaaagaacattcagacca------ttcagactgaggaagagaaaatgcaacatggccatgataggaatgaaaaaaaactaatatgtgctgatgcgt--agtgtgaggtgatgagtgagtgaggctagagaggctggcatggccccgaC------AAGCAGTGCACTCACTCAG-----------------------------------CCCTG---------TTAG--------CTATGAAAATA---AACTCAAGCCGCACTGTGGGGCTGGAAG----------------AAGAAAA--ATGAAGATACA-------CGAGTTACTGTGTATTAG------ATGGCAGGTATAATTGAGAGTACTTTGTAAAAGGAAGGACAGAG--ACTT---------CTTGGGGCCTGGCAGAATATTTTATAGATAAG--------AGTGAGGAGATTAGGTGGAGATTTAGCCAGAAGAAATTGTctgggtatggtgatccacctgtagt--ccctgcactgacatggaggctgggaaaggaggagtttgagaccat---------------tcttagagagtgTTGGgaatattctagaaagttcacaaaaatgcagcttctagatttcattcccagtagttctaatttgggctgatggtcagaactgagaatctgcacttcc--tatgcttttccatgaattctatga------gttcacactttgaga-acactgCTGTGGGATCTATG--------------GCTCAAGGCCTCAGTGAT---------ATGGAACCATGGTGGCTTTGGGAGAAGGCTGGAGTGGAGTGGTAGGCCACCATGCCATAGGTAGTTAGTTAGTGGCAAGTGAGCAGAGATCAAGAGGGAGATCTGTGTTTAG----------CATTTCTGACCTGCTCTTCCCAGCTCCCTGAAGTGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCGGTGGACAGCATCACCAGCCAGGAGAGCAAGGAGCCTGTGTTCATTGCAGCAGGGGACATCCGGTATGGCCCA-----ATCACCTCG-----TCCTTCATCTCCATCTTCTTCGTTCTGCCTCTTTGTCCTGT-----------------------------GTCTGGTTACCAGC------------------------------------TGTCAGCTTT--------------------------------------------------------ATGTCCCTCTCCTTTATCTCCTTATTCTGTCCTTGCTCAGT---ACTTGAGGCCCTGAAGGTGCAG-CTGAGACATTGCTTGAGCTACTACAAAAAGAAATGACATTTTAAGAGAGTTCCAAAAAGAAGAAAATGCCCCAAAGGGCATTTGAGT-----TTGTCCAAGTTgcacttgactagcatgtgaaagaccatgggttcagttctcggcatcacaaaaaaGAAAAGCAAAACCAGTCATCAAAGTGAGACCCCCAAGTGGAATCCTTCCTTTGAAGGCAGAGAGGAAATC-----TTGTTATACATGCAGATTCTGGAGTCATACCCATTCTGAATCAATATTGGAATAGAGGAATGAAGAATACAAGGCTCTCTGCATTTTAACATGATCACAAACTACCAAGTTAGCAAAACTGTACCATTGATTATCCTTGCTTCTCTGG--CTTTCCCAGCCAAGAATC-----------TGCCAGGAATCTAGGAACTGTGGCAAGGGAAAGTGGGCAAAGCATG---CATGCAGCTCTGAGATAACTCTTCCAAGTAAATTGTGTATTTTCTTCCTGCTAGACGGCGCCTTTCAGAACAGCTGGCTCATACTCCTACAGCCTTCAAACGAGACCCTGAAGACCCTTCTGCAGTTGCCCTCAAAGAGCCCTGGCAGGAGAAAGTGCGGTGAGGAGGGTAGAGGG
s HiC_scaffold_1 140097727 1997 - 233722169 AGTGCTGCATACCAGTGACCAAAATACAGCTCCCTCCTACAAGGGATTTAAGATCtgacagaagagaggaaaggaactgtAGGCAGGAGGTATAATGTGGGGTGATCCAGCTTGTGGAGGAGAAGGTAGAAGATACGGGAAGACCCCAGAAGT--------------------------CGTC-------------TTTGGGGAAGAAGTCAC-TTCTTGCTGAGGCTG--AGGATGGTAGGAAAAAGTGGACAAAGAGTCTTCAGGCAAAGGAGCTTtgtac--aaaaactaaaaacagaatctggccatagcaggaactaaaagca-CTTTTGTCTGGCTGTGCTTGAAAGGGGAAACAGTGAG-GAACGAGGCTGCAGAGGTCAGCACGTGCCAGACTGTGGGAAGAAGCCTACCTGCTCTGGACAGAAACTTAAAGTTTATTCTGTGGTTACGAGACCCAGAGCAGGATTTTAGGTAGAGCATTATGCGAAGATCTATCTTTGAGCTTACTGTCCAGTTGGAAGGTTAGACATAGCATTTAAGAAAAGCATTAAGATACATTCTGTGCAAGGCAGTGAGCAGTGGTGACAAGTGGCAGTCA-AAGAGAAGGACCCTGGGACGTGGAAGGAAAGAGTAACTTGGTCGGGGATTTGGGGTCTGGTACAAT----TACAGAGGCGGAGATTCAAGTGTGTGACTTAGATGAAA---TGGTCAGAAGAA-TCCCCAGGGAAAA---ATTCATCTCTAACTACACGGGGCTCAGTCTGAGACTCAAAGTTGAGGCTTCTGCGATGGTCAGGGCAGTGATTTGTCAAAGTTAGTGTTGGAGAACCTGTTTAAAATTTAGA---------CTTCCAGactttgttttca-taattttgattCAGACCAGTGG-----------AATGTACCTTTCAAGCAAGCATCTCAGCCAGTTCCGATACAGGCTGTGCACACTTGGAGACATAGTGCTGCTGGGTCCACGTGAGCATCCATGCAGTTTGAGGTCCTAGTGGTCAGGATGGCATGGAACCACAGGAGGTTTG---------TGAATCAAACTGGCAGG-------GACAT-----GTGGGATGACAGCAACCAAACAGGCAGTGAGACAGACA-CTGTGCTTAATGCTGCTGACcagctctgccctgctgtccccaGCTCCCTGAAGTGCACACCAACAGCTGTGACAACATCTCCCAGTTCTCTGTGGACAGCATCACCAGCCAGGAGAGCAAGGAACCTGTGTTCATTGCAGCAGGGGACATCCGGTATGGCCAGCTCATGtcaccttgattctttttttttttttttttttttttttttgtctttttttcattttatcggtaccggggatcgaactcacaaccgcctgcctgcaagcaggtgcttatgccgctgagctaaatccccagccccgtgtcaCCCTTGATTCTCATCCTTTCATACACTGTCTCTTCTTTGTTCCCTTCATCTGTGTCACccaatgtcatttctttttctctccttattcTGCGCTTGTCCTACCAAACCCGAGGCAGTAAAGGTACAGGTTGGGACATTGTTCAAACtactgtaaaaagaaataaaattttaagaagattgcaaagaaatgaaatcatgagAAAAGA-ATCTGAGCAGTGATTCTCAAAGTGGGATCTGAC--------------------------------------------AGAAA-----------TCATCA------------------GAATCT---------AGGAAGAGGGGAGATCAGAATCCGTGGGGAATGCAGAGTCTGTG------------------------------AGAGGAGTG--GGAGGCTAGGTACTCTGCAGTTTAACGTGATCACGCACTACCAGCATAGCAGAATGATCCCACTGATTCTGTATCCTTCCCTGAgtctctctcagcctcagttcctATCTTTTTGTGCCCAGAATTCAGGAACAGTG--CAGAGAATGCTGGCATAGACGGGGACATGAGGCTTTGAGGTAACTCCTCCAAGCACATAATGTATTTTCTTCCTGCTAGACGGCGCCTTTCAGAGCAGTTGGCCCACACCCCGACAGCCTTCAGGCGAGATCCAGAAGACCCTTCTGCAGTTGCTCTTAAAGAGCCCTGGCAGGAAAAAGTGCGGTGAGTGGGGCAGTGGG

a score=12249
s chr3            94996724 288 + 160039680 CTCATATTCCAAGGTATCTTCAGGTGCTCACCTCTTCCATTGCCCTTCTACATCTAAACACTC-ATCAGGCTTCCTCTGTGGTCTGAGTCCTTACCCTGGCATCA---TCCTGTGAC---------TTTTTTCTTCACAGGAGGATCAGAGAAGGTTCCCCGTATGGCCATCTTCCCAATTGGCGACTCCTTTCAGTCATTGTCAAGTGTGGAGATGACCTTCGCCAGGAGCTGCTGGCTTTCCAGGTGTTGAAACAACTGCAGGTAAAGAAATGGAAGCACAGAGCAGCAAAGAAAAAAA
s HiC_scaffold_1 140101006 285 - 233722169 CTCCTATTCCTGTGAACCCACA--TACTCACCGTCTTTATTGCCCGTCTGCCTCCAGCAGCTCCATCAGACTTC-TAGGTACTCTGCATCTTTACC-GGACATCAGTACCCAATGACAGCCTTTACTTCATTCTTAATAGGCGTATCAGAGAAGCCTCCCCCTATGGACATCTGCCCAACTGGCGTCTCCTGTCAGTCATTGTCAAGTGTGGGGATGACCTTCGGCAGGAGCTACTGGCCTTTCAGGTGCTGAAGCAACTACAggtaaggaaagggaa------------aaagaaagaaa

a score=34111
s chr3            94998422 1368 + 160039680 AGTATTTTCATTTTCTAAAGTAGCTTTCTCTGCCCCTAAAATC--CCATCTTTTT--------------------ATTATTCAAACTTATATTAATAGTCCCTACTCTCCCTACTT---AGGTGATAAA----TTTCCTCTCTACCTTTTTCCTACCTCTGTGTAGTTCCTGCCCTTTGCCAGGCCCTGAAATTCCTTTTAAACTTCCTCGTT--CTTTTATTTgtggttgtgtacacctacaatcctagaacatgtggagacagggctccggaattcaaggttagcctacatgagtctgtctcaaacagaaaacTTCCAGGTTCTTAATAGGTCAGTAAGTCTTAT----TTAATGTCCTTCAATCCACGACACTAAGGGAGAGAGGTTGAGAAGAAAAT---------TTTATTCTCTAGTTTGGAGAAAGATGAGCCACTCTCAATACCTTTGTGTCTCTTCACAGTCCATTTGGGAACAGGAGCGAGTGCCTCTTTGGATCAAGCCATATAAGATTCTTGTGATTTCAGCTGACAGTGGCATGATTGAACCAGTAGTCAACGCTGTGTCCATCCACCAGGTGAAGAAACAGTCACAGCTCTCCTTGCTCGATTACTTCCTACAGGAACATGGCAGTTATACCACTGAGGCATTCCTCAGTGCCCAGCGCAATTTTGTGCAAAGCTGTGCTGGCTACTGCTTGGTCTGCTACCTATTGCAAGTCAAGGACAGGTAAGTGACTTGTGCCCTTCATCCTAATCTTTCAGAGGGCTCTTCTCTATCCCTTTACATACAGTTCTTAGCTGGTGAA-----CAACATATTTTT---AGAGAAGATTTTGTTTGTGTGACATTAAGCCAAAGAGGAAAACTGTGCTGGACAAATGCTAGAGGAAGTGAGGAAGGAAACTGAGGATTTA---GAGGAGTGACCATTTGAGTAAGTAGGG-CAGAAAGGATA--AAGGAGAATGAGGACAGATG-AAGTTGTGAGGCAAAGACAAGGAAATGTTCCATTAGGAACAAAATTTGGA---------------------TAGCAGGCAGT----GACATGAGGC---TGAA--GAGTCTGGgaggcagggtct---ttctatg----------tgac-----cctggctgtcctagaccttgatatgtagaccagggtggttttgaattcagagagttcttc-------ctgcctctgcctcctgagtgttgggattaaaggcctttg--------------ccaccacactca----------------------------gGGAGAATTTTATTTTGCAGG-ATAGGAATGA----TGTGTTCTGGTCTATGCAGATGCCATACGGTGCTGGGGAAGAGGGTTGGTGTGACTGGGTCCTTAGCAAGAAAGCAAGAGATAATAGACCCTGGTAATACTGTCAGTGACCAAAAGCGAAAAAGGAAATGGATGAGGGATTCCGTAGAGATAAGCTTGAAATTCCCAGTCATGCACTCTCATTTCTCCT
s HiC_scaffold_1 140102129 1414 - 233722169 AATATGTTTGTTTTCTAGAGATGCTTTCTCTAGGCCTAAacccttccatttttttctttttctttcttttttcttattatttgaacTTATATTACTGTCTTGTACTTGCTCTGCTTGTCAGGTGACAGTGAGTTTTCCTCT----------------TCTGTGCCTTCCTTGGACTTT--CTGCCTATATGAT--------AGCTTCCTCATATACTTCTAAGAGTAGTTTCCCATCTTTATCA---------------------GGCCCTGGAACTC--------CTTTCAGTGGT-------------------TCCTGGTTCTCAGTAGGTTGGT----CTTATGCACTTTATGGCCTAAAATCAAGGTTGCCTAGAAA-AGAGCTTGGAAAGGGGGTAATTTGAGCCTTCTCCCCTCATCTGGAGAAAGGTGAG--AATACTAATACCTCTGTGTCTCCTCACAGTCTATTTGGGAACAAGAACGAGTACCCCTTTGGATCAAGCCATATAAGATTCTTGTGATCTCAGCTGACAGTGGCATGATTGAACCAGTGGTCAATGCTGTATCCATCCATCAGGTGAAGAAACAGTCTCAGCTGTCCTTGCTTGATTACTTCCTCCAGGAGCATGGCAGCTACACCACGGAGGCATTCCTCAGTGCCCAGCGCAATTTTGTGCAAAGTTGCGCTGGCTACTGCTTGGTCTGCTACCTGCTACAAGTCAAGGACAGGTAAGT----------CCTACCCCTCATCTTTCACCAGGGCTGCCTCTG-CCCTTCATGTGTAGCTCTCAGTTGATGGAAGACGCAACATACTTTTACCAGAGACAGATATATTTAAATGACAGTAAGCCAAGGAAACAAAC------AGACAAGTACTAGggtaaaagaacaaagaaacaaagggtTTATGGGAAAAGTAAGGGCTTGAGTGAACAGGGActgagaagacaagaaggagag-gaggaaatatGTTCCCTGTG-----------AGAAAGTATTTTAGTGGGATTAAATCCTGCACTTTACTACATGCTAGGGAAGTAGTACACAGTAGTAGACATCAGACATGTAAACTGAGGCTAAATTAGAAGGCCTTAGTTCTAGGATAGAGCACTTGACAACCATGTGCCAGCCCCTGGGTTTTATGGGGGAGACAGAGT-GTTACAAGACTGAagagttgggctggggatttagctcagcggcataagcacctgccttacaagcgcatggtcatgagttcgatccccggtactgatttaaaaaaaaaaaaaaaaaaaaaagactgaagagtTGTA-TTTGCAGGCAGAGGAATGAGCAGTATGTTTCTGTTTACTCAG-TGCCTTGTAGCATTGTGGATGAGGGTGGATGTAAATGGGCTTTCAGCAACAAGGCAAAAGGTAAAGGAGCCAGGC-TTGCAGGTCATGACTGTGGCTGATCAGCAAGACAAGTGAGGGACTTGGTAGAGATGAAGTTGAAGTT-CTAGCCATgaacttatttttattct

a score=7039
s chr3           95000544 388 + 160039680 ggcatgacagcctgtaggctctcact--------gggtggtagctgcagg-----------gagttccagatcatcctag-ctatgtggggaatttgag----gcctggaccacat---gagcttctatctcaaaaaataaa-TAAATAAAGTAACTGAAAACCATCAAATAAAAGAAAGTTGTTGGTGTTGATCAACTAGGTCTACGCTTCAACTTGCTATAAAAATCACACATTCAACATGATTACACAAAGCAAAATCAGCTATCCTCATCAT-AACTGTCCTACTTTAATTAAATTAAGTAAGCCTGAAATAGAGGAGTGTGCCATACTGGCCAAAACTGTTGCCTATCATTATAGTAGCAATAATACCAAATTAGGCATAGAGTGTAGAATACACT----AGAGTGTGCACTGGCG
s HiC_scaffold_1 48968646 366 - 233722169 GGCATGGTGGCCTGTAACCCTGTAAttgcaactcaggaggctgaggcaggaagattactgcgagtttgaaaccagcctgggctacaaagtgagcttaagaccagcctgaactgcatagtgagaccctgtctcaaaaaacaaaacaaacaacaacaacaacaacaacaaacccaaaacaggCTGCTGAAATTAATCAGCCAAG----------------------------------------------GCAAAGCGAAATCAGTCATTCTTGCCACCAACTGCTGAGCTCTGAGGAAAT---------CTGAAATAGAGTACTATACCATGGTGGCCAAAACTGGAGTCCACCACTACAGTGGCAATAAAATTGAACTGGATGCAGCATGTGGAAAATACTACGGAGTATGCGCACTGGTG

a score=490411
s chr3            95004009 12441 + 160039680 [encoded data, 13074 characters]
s HiC_scaffold_1 140106543 12012 - 233722169 [encoded data, 13074 characters]

a score=5391
s chr3            95026757 111 + 160039680 TTTTTTTCCTCTAGGCCTTGGTTATCTTCTCATGTTTATGTTTATGAGCTATTATGGATTAATGTTCATATACCATATGAGCTTAGAGACCAAAGTGCATTTCCACCATTT
s HiC_scaffold_1 140125873 111 - 233722169 tttattttctatagACTTTGTTTTAATTCTCATAGTTAAGCTTATGATCAATTGTGGGTCAGGGTTCATATATTGTATGAGGTTGAGGACCAAAGTTTATCTCCACCACTT

a score=84788
s chr3            95032551 3464 + 160039680 AAAGATTCTCTTAATGAAAAAGAAAA-AGCCCAAGGG-------------------ACTGTCAAAGATGGAGATGACAGGCAG----------CAGCCATCTGCAGAGCAGAAGGTAAGGACA---------------------TTCCTTCAGGCC-CACTCCTCCACTGT---GTGCAAAGCTATCACTATTTGAAGCAAAAGGGGAAAA---CTTGCCAAGCTTTATTCCATC-ATAAAGGCAGCAGAG--CACATCTAAGCCTCTATCCAACC-CCGTCTTTACAGTCCCCGGGCAGACACAGCTACCCCTCCC-TCCGGTCTCACTTCTTCTCTTCCTCTTTCTTGTCATTCTTGCCATCCTTGGTGGCCTGGGAGGCCAGAGCCCCCATGACACTTCGAATGGCTGCATTGTTGGGATCCACACCTGGAAGGTTCTCTAGGACGCTCTGAAGGAACTCCGGGTCCTGCATGACGTCATAGTCATCCTCCTCCTGAAAAAAGGCACACGGAGCAGCGGAGTGCGGTGACAGGGGGCAACAACATGTTGTAAGGGACAGCAACATGTTGCTGCCC----------ACTCCTGTGTGC---AGCTAAGGGAATGAGA----GGGGCAA--GCCAACAAGACCCATGATGTCCATGAA---TGGTGTGCATTCCCCAAAGCAC--AGAAGCCGGAGACCTCTGCTAACGGAGCTCAGAGAGGAAACC-AGATGCCACCAC----------------AGCAG-CTTTCTTGGG-------------------------------------------------------------------------------------------GGGGGGGGGGAACCAGCAC--------------------------------------------------------TCCTTTCCCCCAGGCC----------CTCTTGGGAGGA----GCCCCACAGAACTGTTAGGGATGGAGATGACAGGCCACTCCCACTAGAAAATTCCAGGACAACGGAA-------------ATAAAAACACCTAAGTGTTTCCTTCTGT----------------------TGCTCCAAGACCTTTCTTATGAAATGCCAGAGAGGAAAGGCCCTGGTCCCAAAAGGATAAAGATCTGAATGCAGGGGATGTCAGACTTGGCTGGGTCAGAGCCTCACTGCTGGCCCTCACCTTGACTGGATCAGATGTGTCCATGGCTGAGCTGGCATCCATGTCAGCCGATTCT---TGGCTAAACTCTGAGGAAAGGAGAGCAGCAGCCCGCTCAGTGCTAGCTCCTCACCCCAGACTCTGTCCAGGCCCTGCCACCCAAGCCA---TGGCCCACCTGTTCCCTGCAGGGACATCTGCATGGCGTAGGCGATCTGCTCTTCCTCAGTCATGCTGCTTAGGTCTGGAAGCCCAGGACGGCCAAACTCCTGCTGGTTGATGGTCATCTTCAGTAGGGCGTCATCCGAGTCTGGGCAAGGACAGAAGGCCA---GGGTAGACCTAGTAGATATTCCACAGGGCTGGCCACACTGCTCCCCAAGCC----CAGCCCAG----CCCTG-----CCCTCCCCACTG-----------CATCGTGAAATGGCTAGCACCCT-CAGGCCCAGGAGTTCAGAATCCACCTCTTTCACCTTCAGTCCCAGGTGTAGCAATTCCAGCCTCAGCTGCAGAGGCCGCAGCGGCCCGCCGTGCCTCTTCCTCCTGCCGCTGCCGCTGCTCTTCCATAGAGACTCGAAGGGCCTGGTAAAGAGCAAGACAAGggggctggagagatggctcagcggttaagagcgccagctgctcttctgaaggtcctgagttcaaatcccagcaaccacatggtagctcaaaaccatctgtaatgagatctgatgccctcttctggggtgtctgaagagagctacagcatactta-catataatgaatatataatgaataaatacatctttaaaaaaaaaaaaaGAGAGAGCAAGACAAGATCAACTCCTGGAGACCACCACAGTCGATGCTGTGGTATCCTACACAGGATGACACCTCCTCTGGCTTGCCGCATGGGAAAGAAGCTGTAACACTGACAAGCCCTAGTAGAAAATGGAAGAAGCAAGGCAGAGTCTGTGTTTAATTGGGAAAAATGAAGACACTAGAGTCTTGCATTGGTGCCCTTCAAG------------------------GAAGTGAAAAG-GGTCTTAGAGAACGGT-----GGTACGGAAGTGTTCAGGACTGTCTCGTCC-CATCAGCTGGGGATCTGTACAGAGAACAGAA------CCCCAGGGTCAACATTTGCTTACCAGGGCCAATTCAGGATCAGCACTGGGATCTACTCCAAACTCAAAGTCACTGGCACCAAGACCCAGCATGGCACCGCCTTCACCAGCCAGAATAGGAGAACTGATGAGAGCATCAGCCAAGCTAGGTCCAGGAGGCACTGTCACTAGATGGGACCCAGTTCCATCCTTGCCATTCAGTGTGTTCACAAAGGCTGTCAGCTTCTCTGTGTTCACCTCCTGTAGAGCAGAGAGCACAAGACAGACACCTCCTTCACTTACTGCTTCTCAGTCTACGGCTGCAGCCATCTCCAGAGTCCCCGAGGGAGCTCAACTCTATGAAAGGATGGCCGTGTTCATAACGTGGGATCGGATCCTATGCTCTGCAACCCTGACTTACCTCTTCCCCAAAATTAATGATGTCAACATTCACTTTTTCTTTCTTAAGGCGTTTAGCTAGTTTCACCAGCTATGAAGAAAGGGAG---AAAAATCAAGAAATTGATTCTCTGTAGTGAGGACTGAATTTGCCTCACAGACGCATACAGAAATTCAGCATCCTACCAAAGGTCTGGCCCCAACACTGACATCACACATCCACCTTTCCCCAGATGACATGCCTAACACCTCTGCC---CAGTTCTAAGTACTGCAAGCCAC--------TTCCAAATGGAGGCCTGCCTGGCAGGCTGTCTGTGGACTCACATCCTTCTCGTTGTCCTCCACAGGGCTACCGACAAAGGCGATGATGCGCATCTTGTGATTCTTGCCCTGCCGGTGCTTCAGAGCCAACTTGGAAGGGAAAAGAAGTTCCCGTG--AATCCCAGCAGCACATGTCCCTGAGTCAGTCTGC-ATTTCCTGCTCCTTACAGTACCTATGAACCTCAAGTCTACCATAATGCTCACTCGGTACATGCCTCCTCTTTCTGTTGTGCCTCAAGTGGACCAGAGTGTAAGACCAAGTCTCATCCTGCCCCATCCTTTCTATACTGAGTAAGCACCCtctagatcagtggctcccaccttggaggggttggatgaccgtttcacagggtagcatattagaaattaaccttatcattcataacaataggcaaaatcgtagttatgagtagcaccaaaacaattttacggctggggtcatcacagcacgaggaactgtattgaaggCTGAGAAGCACTGGTCCAGGTCCTCTCG---TCTTGCTCTATTCAGCACTAGATCACAGCTCTGGACAGAAAGGAT------CACAGACCCTCATAGCAGGGAG---------------CCAACAGGACTCACGTGGGCCACGCGGATGCCAGTGCAGAAGGTGATCTTGCCTTTGGGTTGGACAGTGTGGAGCTTGGAGAGGATACGGCCAGTGTCCGGGGTGAGTGTGGTCAGCACCTCACAGTCACTAAATGTGAGCAAAGAATTTTAGTGAGTTCAGACCACACAAGTGCCTCCTAACCATGCCCATTCATCTTCTCCtttcttttttccctcag
s HiC_scaffold_1 140154668 3412 - 233722169 AAATATCTCTTTAATACAAAGTAAAACAGCCCCAGGGTGGCAGTCTGTGAGGACCACCTATCATGAGGAGAGATAAAAGGGAGGGAAGCGGGTCAG--ATCCGTAGAGCAGCAAGTGAAGACAGAGTACTTAACAGTGAAGGAACTCCACCACACCATGCTCCTCCTGTCTCACACACAAAGAAACTACTGTGTGAACCGAAAAAGGAAAGTACCTTGCTAAACTTTATTGAGGCTGTAAGGGTTACAGAGGACACACCTAACACTGCACCGGCCCGCCCACTCCTCAGTCCCTAGGCAGGCACAGCTACCCTTCCCCTCCAGCCTCACTTCTTATCCTCTTCCTTCTTGTCCTTCTTGCCATCTTTGGATGCCTGGGAGGCCAGGGAGCCCATGGCATTCCGGATGGCTTCGTTGTTAGGATCCACTCCTGGAAGGTTTTCTAGGACACTCTGAAGGAACTCCGGGTCCTGCATCACGTCATAATCATCCTCCTCCTAGAGACAGGCA----GGTCAGctcagggcaggaagagggcgAGACAGGAGCTGCCCTGGCCCAGC--CCTGCTCCTCTCCTGACAGTATAAGGCTGGCGTACTTCAGCCAAAGGAAGGAGACCGCACGGCAGTGGGCTGCAGTGCCCAGGGG---CATGAAAACTTGCCTTCATTAATGACTGCACTGAGATGCCTGAGAACTCTGCTAACCACACTTAGAGGAAAAACCCAGCAGCCAGCACGTTTAGGTTTCCCACTACCAGactctcttttgttctttctttcctttctttcttttctttccttcctttctttctttcttttccattcttccttcccttccccttccctttccttccctttccggaaccaggaatccaactcacgaccttgccaggaaggcgcttacatcactgagctaaatccccggcccttccctttcctttttctcagaCCTCTTCTTATTCTTCTGGGGAGATAGTACTCAAGAGTACTGTC--------------CAGACTGGTCCCACTAG----TTTCAGAACATTGGGGTGTTGCTCCCTCTCTGGCCACAGTTATTCTGTTCCTTTAGCAAGGTTCGCACACAGGAGGAAGTGTTCCAGCTTCTCATCCTTGAAA---CCAAGAGGAAGGGCCCCAGGCT--GTGGGCCAAGGCTCTGAACATAAGGTGATTTGAGCCTGGTAGGGCAGGGG--TCACTGTTGGCCCTCACCTTGGCTGGCTCGGAGGTGTCCATGGCTGAGCTGGCATCCATGTCAGCTGACTCTGCCTGACCAAACTCTGAGGAAAGAAGAGCAGC---CTGCTCAGTTCCA-CTACCCACTTGA-CCTCTGCCC----CACACCACC-AAGCCAATCTGGCTCACCTGCTCCCTGCAGGGACATCTGCATGGCATAAGCAATCTGCTCTTCTTCCGTCATACTGCTTAGGTCAGGGAGCCCAGTACGACTGAACTCCTGCTGGCTGATGGTCATCTTCAGCAGGGCATCATCTGAGTCTGGGAAAAGGAGGAAGGGCATCCAAGTAGAACAAGCA------CCATAC------CCACACCGTTTCTCCAACCGTGCCTTCCCAGAGTCCCCTGGTGCCCCATGCCCACTGTAGTGCCTTTCCAGCTCCCAGTGTTTGGCACCCTGCTGTCCAAGGACTTCAGATTCCACCTCATTCACCTTCAGTCCCAGTGGTGGCAATCCCAGCTTCGGCTGCAGAGGCTGCAGCTGCCCGCCGGGCCTCCTCCTCCTGCCGCTGTCGCTGCTCTTCCATAGAAACACGAAGGGCCTGGAAAAGCACAGGGCACGA----------------TCAGACATC-----CCCCAGCCTCAGTTCTACGGGT------------GGCTAGGGA------GGCAGCTCAGAG----------------------------GCTGGG-------AAAGGGGCAGAGGCTGGCTTATCATGTA----------------------------------------------------GACAAG--------CTGGAGA-------------------------------------------------------------GGGACGAAGTAGCA----TAATAAGA--GGGCAGGATACGGGAGAAGC---------CTCGGGTTTCATCAGGAGAAGAGAGTAAGACAGAGTTTGACACCGGTGCTCCTAGAGAGCAGAGAGAATTATGGGCAAGAGGGAGTGAAACGAGGTCTTGGAAAATGATTAAGGGCTATGGGACTGTTCAGCCCTATCATGTACACAGCAATGGAGGA---GAACAAAGGACCCAAGGCTCCACCTGGGGCCCACATTTGCTTACCAAGGCCAgctcaggatcagcactgggatCCACTCCAAATTCAAAGTCACTGGCACCAAGCCCCAGCATGGCACCACCCTCGCCAGCCAGAATGGGAGAACTGATGAGCGCATCAGCCAGGCTGGGCCCAGGAGGCACTGTTACCAGATGAGAACCGGTGCCATCTTTGCCATTCAGTGTGTTTACGAAGGCTGTGAGCTTCTCTGTGTTTACCTCCTGGGGGAGGGGAAACATGTAACACACAGTCCCCCCAC-TGCAGC--CCCAACCTACAGCT---------------TTCCTGGTATGTGCCCTCCACTGGGAATGACTGTCC-TGTTCACAA--------TTAAACCAATGC-CTCCAGTCCTGACTCACCTCTTCTCCAAAATTGATAATGTCAacattcactttttctttcttaaggcGCTTAGCCAGTTTCACCAACtgggaaaaaagggagaaaaaaaattaagataccaATTTCTCGTTCAGGGGAAAGGACACGCCTCATAACAGTACACAAAAATCTGCTGACCTTGCAGGGCCccagcagaaacactga-atca-aTACCCGCCTTT-CCCACACAATG-GCCCAGCGCCTCAGCTGGGCTGTGTCAAGTGTGAAAGACCACACTTCCTATTCCCAA--GAGGC---CCCCACATCCACCCTTTGGACTCACATCCTTCTCATTGTCCTCCACGGGGCTCCCCACAAAGGCAATGATGCGCATCTTGTGATTCTTGCCCTGTCTGTGCTTCAGAGCCAGCTAGTGAAGGAGGAGATTTTGCAGAGTCAACCCGAGAAGT-----TGCCTAGTTCTTTCCTCTGTCACTTGCTCCTTACAGT-CCTATGTACTGCATACCTACTAAA----------GATCCAATCCTC--CCTCCCGGTGTGTCTC-------------TCTGGGAACAGGT----------------------------GGATAGAACCCTCAA-----------------TTCTAGGGATC---------------------------------TCAATTCTAACATTCATAATTCT--------CCTGGATCCTGAGATTCATC---------------------TCACCATAGC--------CTTTCT------CTCCAAGTAATTCCTACAGGCTCTTCCTGCCCCCTGCTCT----GGCTCTAGCTCAGGGTTCCAGAGATGAGTGGTGTTGGAGACAGAGCCTCTGAGGAAGGAGGGACAATCACCGGGACCAGTAGGACTCACGTGGGCCACACGGATGCCAGTGCAGAAGGTGATCTTGCCTTTGGGCTGGACAGTATGCAGCTTAGAGAGGATGCGGCCGGTGTCAGGGGTGAGGGTGGTTAGCACTTCACAGTCACTGGGGCAGGGCAA--CATTTCAGTGAGTTAGGTCAGCATGAACACCCCACATGtctgactcttgcttttttttgtttttttttattttag

a score=12818
s chr3            95036581 215 + 160039680 CAGCCCCACTGT--GTCCCACGTACTTGGCCAGTGTGATCAGGCCCACGTTATTCTCAGGGTTGCTTCGGGTCTTTGAGTGACATACAATGTTGACGGCATCCTGCTGGGCCTGCAGCCGGGTGGGAAGGAAGTCTCCGTTCCGCATGTACTCACTGTTGTCCACACTGTC-AGATAA----GGAGAAAAGGACACTGGAGGAT-GCCCTGAAACATCCTCTA
s HiC_scaffold_1 140159812 223 - 233722169 CAGCCCCTCTTCCCATGTCACATACTTGGCCAGTGTGATGAGGCCCACGTTGTTCTCAGGGTTGCTGCGGGTCTTTGAGTGACACACTATGTTGACAGCATCCTGCTGGGCCTGCAGCCGAGTGGGTAGGAAGTCACCATTGCGCATATATTCACTGTTGTCCACACTGTCAAGACAGGGGTGGAGCAAAGAGAAATGTAGGGTCTCCCTGACAccctttcca

a score=12157
s chr3            95042318 381 + 160039680 AAGGGAACAGGAGTTCCCGGGCCTGCGTTC--CTGGGC--CGGGATGACTCAGGGAGTCG-TCTGCCAGAGTCCCGCGGGCCCCGAAGCCACATCTCGCCCGGCGACC--CAGTCCCCAGCCCAGGCC-------CTCGGGTTTCGGCGCCACGCGCACCAACAACCCAGA-----CGCGCCCCCCAGCCACGTCCGAAGCTCCTCACCAAACCATAGTGCTCTCCAACACCATCTTGCCTCCTTCCCT-CTGCGGACCGGCTCCGGGACTGACAAACAACAGCACCTCCGATTGGCCTGGTGCTCATCACCAATCAAAGAACTCAG-TCTTCATGCT-GCCCCGCCTCCGCGCCCCGCGGTGTGTTCTGGGACTTGTAGGCGCCACAGAAATGGAAAGGTTG
s HiC_scaffold_1 140165140 391 - 233722169 AAGGGTATGGGGATACCAGGGCCGGTCCTCAGCTGGACTCCAGGATGACTCAGGGAGTCGACCCGGCTGCTCCCTCCCGGTCCCAAGGCCTCATCTAGTCTATCGACCTTCCGCCCCCAGCCCAGGCAAGGATGGCCTGGTTCTGGGTA----GCCCCTCAACTAGTCCCATTCTTCGCGAGCCCCAA--------GTAGTTCCTCACCAAACCATAGTACTTTCCAACACCATCTTGCAGTCTTCCTTTCTCCCGACCGGTTCTGTGACTGCCTAACAAGAGTTCCTCCAATTGGTCTGGCAATAAGCACCAATCACAGGCCTCGGCTCCGCACGCTGGTCCTGCCTCCTTTCTGCGCATTGCATTCTGGGAGTTGTAGGcgacagacaaaataaaaaactg

a score=54146
s chr3            95063616 2271 + 160039680 AAAATA-GACTATCTGGAGTAACAGGTCAAGAAACCAACCTCAAATTTAGTATTTGCAAAGGTTGTCCAACTACAGGTGAGAAACTGGGGCCAGGAACAGGTGAACCCTCACTTATTTCCTCCAAAGGTGGAGTCTGAGGTAAGACATCAGGACGCCCAAGGTGTACATCTATAGAAAAAGGAAAAGAAAAGCAATCAATGAATAAAGAATGAATCAATAAATCAAAGACTTTATGGTCAGAAAAAAACAGGGAAAGATGTATAGTGACTCAGggacatggtgactcactcggtaaacccaggacctgggaggctgaggaaagagggccatgaggctgtggtcagcttggctatatacatggtgaattccaggagagcctaggctacagtaagaccctgtctcactgagaacaaaGAATagctgggcagtagtggcgcacgcctttaatcccagcactcaggctgcagagacaggcagatttctgagttccaggccagcctggtctacagagtgagtttcagaacagccagggctacacagagaaaccctgtctccaaaaaaacaaaaAaaaccaaaccaaactaaaccaaacaaaccaaCACGGCGAGTACGTTTTTTACTGCATAGAAATGGGGTATAGAGGTCCTAG--------GGTGAGAACCCAGGGCTCAGAGGCAGGAGAGTGTCCAGTGTGAGGGGACC-CAGCCCTGA-GCTGACCTGGCTCCACTTCCGCCTTGGTGGTCACTTGTGCTCTGTGTTCCCCAGAGGCCATCAGCTGGGAGGT---GCAGGAGTTGCCGCTGGGGCCTGATCGCCGAGAGAAAGACGGGCCAGACCGAAACTTTTTGGTAGGAGAAGGCTTCACTTCAAAAGGGAGAGAGAGAGCCTACTTAGCACCTGCCTCAGAAACCGTCACCAAGACA--GACAC-----------------CAACACGTACCCAAAGTTGTTCTGGAGCAAAGGTAGAAAAAGGGTTAGTGT-AGAAAGA-AGGCTTACAAAGTACTACCCAGAGAAGAGGGTCGAGTCACCTCACTTTGCAAAGA----------------TGAAAGTGACACACACA-------------------CAGTGCTCTCT-----GCTCGGCTCTCACTGATGGAATGCTCTTGTTCTTCATCAGCATCACCCAGT-CAACCCTATGGCGACCAT----GTCTACCCCTTCCTAGCAT--------GCAGCACTGAAATGTCCACTGCTG-----------------------------------------------------------------------------------------------------------CTTCACTTTGAAGACAGC-------------------------TTTCTGCACCTTGTAGCCTGTCTGCAATGTCTAGGTCTTCTTCACATCACTACGGAACAACTCCTGCCTATGGTGAGAGCACAGGAGCAGCGCCTGGAATCTGCCAGTGTCACTAACAGGAAG--TCTGAAAACG----GAACACTGCGGCACTTCTGGATCGAGAAAGTTGCAGGAAT-GACTAA-AAAACTCCTTCAACAGTCATCAGCGAGGC-------TTCAACCACTTGGACTAATCTGAAAACGCCTGACACCTGGACGTGGAAGAAAATTATGGCTAACATCCTTGCCAGTCCTTCCTACATAAAAGTCTACTTCTAGGCATCTGATCCTGCGTCACACATAGTCTACATCCACAACTACACCATTTTTTC-----CAGTCCCACCAATTTCCCAGAAATAGCCCTCACCTCGACGATACATGTAGGGAGAGCCAGGGGG-GAGCAGCAAC----GCGGAAAC-ACTGGGACAGACA--GTGACTGACACAAGGACGAGAAGCAGCGCTCACAGGATGTAGGCAGAGCAGGAGAGGCCTCTGGCCTTGGCAGCTCCCTGACAGAGGTGTCTTGCCCCCCATGTCTTGGGGGAAGGGAGCCACTGGGGGATCATCTGGTAGAAGCCACTTACAGGGAATCTTCTTGAACACTGTGTTGCACATGAAACGCTGGAACCGCTCAGCATAGAAGCCTGGACGATGCACTGACACCGTATCCTGTTGAAGAGGAGACATAGCTACAGGCTTAACAGAGGCCCAGCAAAGATACGGCTACAGGGTTAAATAGAGGCCCAGCAGGAAAGAGGCCATGTCTTTTGAATAGGAGACACAACTACAGAGAAAAAGAGGCCCAGCAGAAGGCTGTGTTGT-TAAAAAGCTTGTTCTCTTAGATTGAAACCCTACCAGAGGGGTAAAACCCATAAATGaaaaaaaaaaaaaaaaaaaaaggaagaaaCTGCTGAGGGGACAAATGGCAAAAAATGG-AGAAGTGGGAAGAAGGCCTTCAGCTGACATTACACTCACCCCATCATGGACCAGTGCTTTCCAAGAGTGCTCCAACTTCTTAACAAACCTGCCAAGAAAAATGTGTATCACACAC
s HiC_scaffold_1 140177450 2045 - 233722169 aaaatatgattacaTGGTAAAAGAGGTCAAGAAACCAACCTGGTATTTAGTACTTGCAAAGTCTCTCCAACTACATGTGAGAAACTAGGGTCAGAAACAAGTAAGTCCTCTCTGACCTCCTCCACAGGTAGAGTCTGGGGTAAAACATCTGGACGCCCAAGGTGGACttctg--gaaaagagaaaaggtaagaa------------------aatcaataaat-----------------aaaataaaagaggtaatGCGCAAAGGAATT-------------------------------------------------AATGAGGGAAAt-atgttttagtttgttt----------------------------------------------ttttgtctt----------------------------------------tttaa-----------------------catGTAG----------------------------------------------------------------------------------------------------CAACTTAGA----------------------------TTTTCCTGGACAGAAATGGGGAGCAGAGGTCCTGGCTAGACAAGATAATGACTCAGAAC--AGAGGGAACAAAA---CCACAACATGGGCACTGTCGCCCTGGCGCTGACCTGGCTCCACTTCGGCCTTTGTTGTCACTTGTGCTCTGTGCTCCCCAGAGACCGAGGGCTGGTAAGTAATGCAGGAGTTGCCGCTGGAGCCTGCTCGCCGAGAGAAAGATGAACCAGACCGAAACTTTTTGGAAGGAGAGGGCTTCACTTCAAAAGGGAAAGAGAG--CCTACTTAGCACCAACCTCAGAAACCATCACCAAGACATAGACACAAACTGCTAGTTATCCCCAATACACACCCA--GGTATTCTGAAGCAAAGCAGGAAGACGGGACAATGTCACAAAGATGGGTCTACCAAGTATTATTTAGA-AGGAAGGTC---TCTCTtcacttcagaaagaaacagaaagcctTGAGCAAAAATGACATGTACATATACCACCCTCCAACCCCCAATGCAATCTTAATGGCTTTGCCTCTACC--TGAGATGCCCTC-TATTCCATAATT----CCCAGTATAACATAACGATGACCCTTTCAGTCTACATCTTTTAAACACTGATGAACACAGCtatgtaattttcattattatagatagaaacagaaaaggactaggtgtgatggtgcatgcctataaccccagctgaGACAAgaaggaggatcatcatgagttcaaggcccacctgtacacagcaagactctatctcaagaaaaacaacaacaaaaacaaagaaggatTTTTTCATGCTCCTTA-AGACTGTTTGGCACACCTAGGTTTCTTCTGCCTCACTATGGGACTAATGATGTCCATGataggag-agagaaggaaaaactaGAATTTGCCAGTGGTAATAGCATGgagaatttgaaaaagaaaagaatactg--gcACTTTCAGACCAAGGAAGTTGAAGGAATAGACTAAGAAAACTCAGTAAACAGACATTAGTGATGCAAACTTTGTTGGTACCTGAGacaggcattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagacattgataaCATCCTT-----------CTGTATATG-GTCTAC----------CTAACCATGTGGCATAGAT--TCCACATTCAcaatgacacttttttttttttttcaatcccaCCAATTTCCCAAAAATGGCCCTCACCTCAATAATACATGTAGGGAGAGCCAGGGGGTAAGCAGCGACTTGGATGGAAACGACTGGGACAGACAAAGTAACTGACAAAAGGACGAGAAGCAGCTCTCACAGGGTGCAGACAGAGCAGAAGAGGTCTCTGGCTTTTGCAGCTCCCTGACAGAGGTGTCCTGCCCCCCATCTGCTGAGGTAAGGGAGCCACTGGGGGGCCATCTGGTAGAAGCCACTTACGGGGGATCTTCTTGAACACTGTGTTGCACATGAAGCGCTGGAATCGTTCAGCATAGAAGCCTGGACGATGCACTGATACAGTGTCCTGCAGAGCAGAAG---------------------------------------------------------------------AAAAGGCTAT------------------ACAATT--AGAGAAGGAGCAGCCCAGCAAGACGATCTATAGTCTGAGGGTCATTTTCCCCTAGACAAAGATCTTA-GAGAAGGGTGAAactcagaaatgaaattttaaaatgca--------gagaaACTGGTGTGGGGCAAATTAGAAGTGAGAGGCAGAAGTGGG----AGGTCTTTAGATGAC-TACTACTCACCCCATCATGTACCAGTGCTTTCCAAGAGTGCTCCAACTTCTTAACAAACCTGCCAA-AAAATTTTGTATCACATAC

a score=26554
s chr3            95067252 1091 + 160039680 atatatatatataGGCAAAATGCAAAACATATTCCCAAAATGAAAAAAATAAATAAATCAATAAAAGGAAAAGCCGTGAGTGGCTAGCCATGTCCTCTCTGTCCTAATCTGTGACCCACATGC-CCTCACCTGTAGGACTGAAGAATATCAATGATGCCAATATAAAGCAGGAGCCTTTCTCCTTTGTTATTCCGGGCAGGGATGCCACCCATGCTGG--AGAAGCAAAGGAAAAGAGTTAGAAAAATGTGTTTACTACAGGGAGAGA------CTTCTAACGTCA-GCCGAATCTGGACATGGAGCTAAGAACTAAACA--GCTGCCTCATC----------CCCCAGACTATG-------CCCCTCTGAGCAT-----------------GCA-TAGAACCTCCTGT------------------ACTTCTCCCACAGAGCTCCATCAAGACTAAAA------------TCACCACTACACAGCAATTTTGGAGCAGTCCCCCTATAAAAGCAAACATGCTGTTACTTGGGTATCTTAATTTGTCCCCATTAAGACACTTTCCTTGGCAGTCATGTTGTAAGACATCTAAAACATGAAACCATCTGAAA--------CTTTTAGTAACTGTAACCACTGGACAAACCCAA-GACAGTGAGAGAGAGGCCTTTGGCAGGAAAGCCTGTGATATGCCGTAATACAACTGAATGAGATGTATAGTGCGCACCTAAGCTTCTAGATCTAAACAACACTCTCAATCTTTTCATCCTAGAGAGCTCT---CCCCAGTGCACTACAAACTTGGACACTTTTTTTCCCTCTTCTATTCTTTTAA--------AGTCAATGGCTCCATGAGCATCAGTGCTGTGAGC--AGCTGCTGCTTC-----------------------------------------------------------------------------CAAGCCCACTCACTGGTCCTCAGTCTCCACAGTGCCGCCCCGTCGAGCCTCGCCCTGGATGGATTCCATAGCTGTGGAATAGAGCGCCTTCTGTGGGGCTGGTCTGCGCGTGTCAGCCGAGTACTGTGTGTCATTGCTCGTGGGCTCCCTCTGTGCATGGTCCATGTTGTGGATGGACATCAACAGGCTGTAGTCCATTATCTTGAAGCTCTGCAGCACCTAATGGGGAGAAAGGACACTGTCAACATTTGGGAGCTGTCAGACTTCTTCAGGT----TTTCACTGACTTCATCTCTCTT
s HiC_scaffold_1 140181245 1220 - 233722169 acacacacacacaaaatgaatgCAACTTACTGTTCTGA---GGAAAAACTTAACAGACTCATCTAACAAAGTAATGTGAGTGGCT------------TCTGCATCGGTTTCT-------ATGCTCCTCACCTGTACGACTGCAGAATATCAATGATGCCAACATAAAGCAGGAGCCTTTCCCCTTTACTATTGCGTGCAGGGATGCCACCCATgctgggaaaaacaaaaaggaaagaattaggAAACC-TGTTAGCTAGAAGGTAGGAGCTTCTCTTCTAACCTTAAGTCAAATCAGGA--TGGAACTGGTATCTAAATATAACTGACTTATCTTCTATAAACCTCAAGACTGTGAGATTCCTTCCTCCAACCATAAGAATCTCTAGGATATGCACTATAATCTCCTGTTTAACCTCCTGGCCTACCATTCCTACCCCAG--cttcaccaaaacaaacaaacaaaaagactctAATAATTAATAGCAATATGATGGCCTCCCACAATTAACTCTGAATGTTCTCAAAGTTCTATACCTTA--TTGCCTACGA-AAGACATTCTTCTTTAAAGTCATGCTATGGAATACCTAAAA-ATGAAACCACCCAACAGACAGGGTATTTCAGAAACTA----AACTGATTAAACTCAATGACGGTAAGAAAGGTATGTTCCACAAAGAAGTCTTTAATGAATTGTGATAGTTATAATTAACAGACA-----CACACCTAACATTTTGAATGTAATAA---TTTTAAGTCTTTTCACCCTGGATAGCTCTGTTCCCAAATTTATTAAAATCTCCAAA------TTAAAGCCTTTTATACTCTTAAGAAAACTCATTTGATGGTTCTACAAGAATTTTTGTTGCTGGCTTAACTGCTGCCTCAAAGCTACTTCCTTTCCACAAATTAGATTCTTTCTGTAAGAAAAAGTGTTACACATCTGCTCACCTCCCCAATGCCCCAAACCCACTCACTGGTCATCAGTCTCCATGGTGCCACCACGTCGAGCCTCGCCTTGGATGGATTCCATGGCTGTGGAATACAGTGCCTTCTGGGAGGTTGGTCTACGCGTATCAACTGTGTATTGTGTTTCATTGTTTAAGGGCTCTCGTTGTGCGTGATCTATGTTGTGGATTGACATCAAGAGACTATAGTCCATTATCTTGAAGCTTTGAAGCAcctaacagaagaaaaaaatgatctaAGC-TCTAAGAATTATTGGGAATTTTGGGGGGGAATCTCAC-GATTTCATTATTCTT

a score=28787
s chr3            95070583 587 + 160039680 TTCAGCCCAGGACACAGGGAGCTAAAGGTCTGAGTTCCAGCTCCCATAGACACAATGCCAGAGAATTATAAGGCTTTCT-GATGAAAGTGATTTCT-GTGTCTGAAATAGAGGAAAATATAGCA-ACTCACCAAACAGTCACGCTGTAGAGTCTTACACAGAGCACTGTACATGTCAGCATCCAAAAATAGGCCGTCAGGGATATCTTGTAGGAAGTCCAGGTCTTTAAAGGTGGGGAGAGTTTTCTCTCGTTCTTTCTGAGAAGCCCGCCGCTTGTAAGTTGAACCCTTCAGGTCATATTTCATATGCATTTTGACTGACCGAGGCAAGAGATTGTTCATCACCACAATTCGTATGTTCTTGCCGCCTGCTTGCACACAGTACAATCCATAAAATTTGGGCAGCAAAGTACGAGGGTTTTGGTTAAGATTCTAAA-GCATAAAAGGAAAAAGTAGT-AGGCAGGTTAACTGATTTTCAGTGAAACTCAA-GGCAAAAGTTGCTACCCACTGTTCCCATG-----GGGTTGGGTAAAATGTGTT----GACCTATATATTTGTTCAAAATCTTTCAAG-----GTGTCTAAGGGAATTTACAAAGAA
s HiC_scaffold_1 140185107 600 - 233722169 ttcaGTCTAAGACACAC--AATTAAGGAACACAGTCCCATCTACCACAGAATGAACTCTTAAGTATAACCAAGCTGTCTTGCTGATTGAGATTTTTCGTGTCTGA--CAGAGGATA-TGCAACAGACTCACCAAACAGTCACGCTGAAGGGTCTTACACAAAGCATTGTACATGTCAGCATCCAAGAAAAGACCATCAGGCATATCTTGTAGGAAGTCCAGGTCTTTAAAGGTCGGCAGAGGCTTCTCTCGCTCTTTCTGAGAAGCACGCCGTTTGTAGGTGGAACCCTTGAGGTCATATTTGATATGCATCTTGACTGACCGTGGTAAGAGATTGTTCATCACTACAATCCGAATATTCTTGCCACCTGCCTGCACACAGTACAGTCCATAGAATTTAGGCAGCAAAGTGCGAGGGTTTTGGTTGAGGTTCTGAGCacacaaaagtaaaatgtaataaAGCAAGTCAGTTCATTTCCAGTGCAACTCAAGGGTAAAAGTTACCATCCATCCTGCATTTGTCTCTGACATAGGGACAATCTGTCCGTACACCTACACA--TGTTCAAAATTTCTCAAAAGCATGTGTCTCGATGAGATCACCACAAA

a score=29857
s chr3            95071373 1230 + 160039680 gtggtggcacacgcctttaatccccacacttgggaggcagaggcaggcatatttctgagtttgaggccagcctcgtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcgggaaaaaaaaaAGGAAAAGGCTTTGAGCTATGCAGGAAGACCCAGTCTCAAAACAtagagt------gccaacttagccttcacaaagcttagggttca-atgccatcagcacttaaatccagtgtgctggcacacaattgtaaacccagcacttggga------------------ggcagaaactcaatgat------------cagtag-tccaaggccag-----------cactgcagacactgtgtcaaaatccaaaaccagcaa----------------------------------caaaaatcctgtcttgaCTTTA--------ACCTCT------AAGTAAGAGCAAACTCCC--AATCACTGGAGCCAGGTGGCAGCACAGGGCTACAGAG---------------AGAGACCTGT---CTTGGGGGGAG----GGGGGACGCACTATCACTGGCTCTGCTGAGGACTGCTCCCTC----------------------------TGCCAGTATTCT--TCACTCACCATGTAGTATCCTGGAAGCAACTTCTGCAGAAATTCTGCTTCTTTATGCTGGACGGTCTTAATGATGAATTCATCATCACTGGACACATAGAAGAGGGAACCACTAGCTCCAGAATTGGAGAGTTCAATCAATGGCTCACTGCAAAGGGAGTACTGAAAATGAGAGAAGACATTAAGAGTCAAACAGAGTCAAACATGCCAGGGCCT-------GCATCACTT-------------------------------GCAA-AATGTAGGGAGAagccgggcgtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcggatttc--tgagttcgaggccagcctggtctacagagtgagtttcaggacagccagggctacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaa---------------------aaaaaaaaaaaa------TGTAGGGAGAATCACA------TCCATTTTACAG-ACTAAAGCAAGATG-GTGGAAGAAGGAAATTCCTTT---TGGAATACTCCTCTGATCTTAGAATCAGGC--------------TCTGC--------------------------------------------------AATTAGAAACTTACCAAGTAATCATCAGGCCGGATGCCAAAGAGCTCTCTGAAGTAACGGAAGGCAACAGGCGCATAGGTCTTGAATCGAAAGTCATTGTAATGGTGAGCCGGTGTCAGGTTGCTGCCTTCACTAAGTGGTTAAACATAAAGAAACCTTAATGTACCAGTCCCC---ATGAAATCCACCCTGGACAGATGACAAAAGGGTGGCCTACC
s HiC_scaffold_1 140189115 1462 - 233722169 gtggtggctctcacctgtaatcccagcacttgggagg-----------atcatt----atttgagaccagcctgggctacaaagtgaggtcaaggccagcctaaaccatatagtgagaccctatctcaaaaaaactaaataaataaatt------------agtaaaaacaagaattaaaaaatgtaattaatgaGATATTTTGG---TAATAAGGGGGAAAATTTATGTgcca---------------ggggtggtggctcacacctataattccaacaccAGAGAAAGCTGAGGCATAGGATTGCCATAAGCTTGAGGccacctggactacacagtaggttcaaggccaggctaaactatacactg-agaccctgtcacaaaaaattaaaacaacaaataaataaataccaaaggCTGATAAAGCTCAAAGCAAAAGCCCCAAGTTCAATTCATAGTAATCGCCCctcaaaaaagatagaaaaaaaatcctttaaccACAGTGACATGATAGAA--ACAGGGCAAAAAAGTATGTATGGGCAATCACAAACCCGTATACTCTAACACATCACTGACTGACACACTGTT--TTGCCCTGCTGAAGACAGCTTCCCCAACCCTGTCCAGGATAGGCAGCCTCAGTGGCCAGTGTCCTATCCCCTTACCATGTAGTACCCAGGAAGCAGCTTCTGTAGAAACTCCGCTTCTTTATGCTGCACTGTCTTGATGATGAACTCATCATCACTGGACACGTAGAAAAGAGAACCGCTAGCTCCAGAGTTGCAGAGTTCAATCAGTGGCTCATTGCAGAGGGAATACTGAGGCCAAGAGGAGACAGT--------AACAGATTTAGACATACCAGTACCCAATACAGAAATCAATTAGATACACATctattctgaagaaaaactaCAGCAAGAATATCAAGAGAGGCCAGATGTGAtgaagcatgcctgtaatcacagcagtcagaaggctgagaccagagaatcactgtgagttcgaggctagcctgggctacaaagtgagttcaacgtgagcttgaactacatagagaaatcttgtctcaaaaaaagatgagggaaaaaaattttaaaagccttaaGGTTATGAAAAGAGGGAGCCTTTTTCTATGAATAATCCTAAGAAACCGCAGTTAAGAGTTCCAAAATCAGttgcttaggggctggggatttagttcagcggcataagcacctg-ccttgcaagcaggcggtcgtgagttcgatctccggtaccgataaagagaaaaaagaaaaaaaaaaaagtgtaaaaaaaaaaaaaatcagttgcttACCAAGTAATCATCAGGCCGGATACCAAACAGCTCCCGAAAGTAGCGGAAGGCAACAGGTGCATAGGTCTTGAACCGGAAGTCATTATAGTGATGAGCAGGTGTCAAGTTGCTCCCTTCACTGTAGGGTTAAACAGAA--GATCCCTAACTTCTCAATCTCACAGAGGGAGTCCACCCTAATAAGG----GAGAGGGAGGCTTTCC

a score=14019
s chr3            95073838 339 + 160039680 CAGAAGCATTC----GGCAAAGCCTGCTGTAGAAATTCTCTAATCC-CATTATCTAAATATACAACAAGGTTAAGGG-----------------ATGATGAGAAC-----CCTTGAAAGTGTCCTGAGGCTGA----GCAAAGTCAAGTTGTCTAGGACATTCTCAGAGACATTGAT-----CTCTGTACCTGGGGAAAAAGATGCTCTCCACCACGTAGAAGTCTTGCATGAGGACATCACGCTCTGGTTTGGTGCTCAGGCTGCCCACAGTGTGAGTGATGCCTAACTGGATGGCACCTTTCAAGGCTGATGAAGTTGTCTAAGAAACAGGAAAGAAATTACAAAAATGTTCTGGTATCAAGTCTAACCAAAG
s HiC_scaffold_1 140190701 372 - 233722169 CAGCAGCATCTAAAGGACAGAATCTGCTCTTAAAATTCCCTAGTTTACATCAGTCCAAT-TATGAATAGGCTAAGGATTGGACACATCCTTAATATGGTCAGACCATGAATCCTGAAGTTGCTCTAACATTGACTTTGAAAAGCTGCATCTTCTAGGATATTCCCCTAAACATTAATTTAACCTCCATACctaggaaagaaaatactctccACCACGTAGAAATCTTGCATGAGGACATCCCGCTCTGGTTTGGTACTCAAACTCCCCACAGTGTGAGTAATGCCTAACTGAATGGCACCTTTCAAAGCTGATGATGTCgtctaaggaaaagaaaaaagacaggaaaaat-ttctaa-attaagtGTGACAACAG

a score=11020
s chr3            95074665 571 + 160039680 tggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctg--agttcgaggccagcctggtctacagagtgagttccaggacagccaggactacacagagaaaccctgttttgaaaaacaaaCAACAACAACAAATATATATATATAAAACAAAAATTCAGAGTCTGATTTGACTGTATAGTTATAGAAGCTTTGGTCCTTTAA--AAGAAGGGCAACTGTTTCTTCTAAGAACA---------------TGAAAGTAGTTAAA---------AAAAACAAAAAACCCAACAACCTCTTTATTGAAAAACAAAACATGGTCAGAAATGGTGCTGAATacacagacacacacacacacacacacacacacacacacacaGAGCAACTCTGTACCA---CATAGAGATGCATTCCAGTTTGGTCCTTTGCAACACCCTATCTTGTGTTGGTAGAGGAAAAAATACTGGAAGGACTGGTTTCAAGTCACTCCACAAAACACCACTGTTAATATCTAAAAATTTGTTTGGCAATACCAGGCAACTTGAAACTAAAATTTTAAATTAAGAAGAACCAAAAAACTTAAaaaa
s HiC_scaffold_1 140201315 536 - 233722169 tggtggtgtactcctgtaatcccagcactcaggaggttgaggtaagaggatccttgcaaattcaagaccagcctgggctacaaagtgagcccaagaccagtcTAACCCAGGTAtcgagaccctgtgtcaaaaaaaaaaaaaaaaaaaaaaa----------------aaacatttcaagcCAG-------------GCCACCCCAGCACTGggtggctgatgcaggaggattgcagtcagttctgaggccagcctggaccacacagtgaaagt--tcaaagccagtctgaactacacagatCC----AGTCCCT-------------AAATAAGTTAAGTAACAAGAATGAGTCATTAAACTGTTACAAAAAATTTTTCTAAC--------------CAACTCTGTACCAAGTCTTAGGGAAGCATTTTATTCTGGTCCTT-GCTCCACTCTATCTTGTTT--GTACAGAAAAAGATACTGGTAGGGCTGGTTTCTAATCACTTGGCAAAACACC-CTGTAATTCTCCATGAATATGTTTGCTACTACTGAGTCACTGGAGAGTAAAATTCCCTATTGAGAAgaattacaaaagagaaaaaa

a score=8097
s chr3            95077789 423 + 160039680 agacagcatggactacattg--tgagttccaggactgccaaggcatagagagaccatggctcaaaga---aacaa-------aaCAAGAAAAAACACTATTTATGGAGAACAGTATCAAAAAGATTTgccaggcatggtgattcatccatataatctcagcacttggaaggctgaggaagaaagactacaaa----gagttctaggccagcctgtgataaaatgagaaactatctcaaaataagcaaacaaaaAACCCAATAT---AGTAACAGTGATGCCCGTCACATGTTCCCTAAGTAAGGTGA-----TCCACACAGGCCGTCCAGACTCACCTTCTTGTATGTAGTCTCTCCAGAGGAATCAACACTTCGATGGCCTATTTTTTTAACAGGCATGACAGAGGCGGAAGGTCCCTAAAAGAAAAAAATTAAGATTAATATATG
s HiC_scaffold_1 140194673 414 - 233722169 AGCCAGGCTGGGCCACAACAGTTGAGTTTAAGGCCTGG-ACTGTGCAAAGAGAgcttatttcaaaaacaaaacaacatcaacaacaacaaaaaac------tacaaagaacatcctcatttaaacatac-----------atacatacacatag----aaTACTTTGCCCTTTATGAAATATAGATTCTAAACTCTAAATTGTA---CAGCCAATGTCCAAAGGCTCAGATATTAACAAATGGGATATCACAGAGAACAGTATCAAGGAAACTGTGCTGTCCCTACTGCATTCTCAAAGTAAGATGAGAGAGTTCA--------ATCCAGACTCACCTTTTTGTATGTTGTCTCTCCTGAAGGATCAACACTTCGGTGTCCTATCTTCTTGATAGTCATGCCAGTGGCATAAGGCGTCTAGAAGAGAGGAGTCTAAATCAATATATG

a score=11154
s chr3            95089060 634 + 160039680 AGTCTACAGCTGTT--CCGAGAAGAGCGGCTGGGCTGCTCGTCATTGCGCGGAGCTCATGCATCTCCAGCACACACACACACAGATCTACCTCTCTTACGGTGGACCCCACAGCACAGACAGCTGAGACCTAGTAAGGGAAAAC--AAGGTTATCGCTTACTTTTGGAATTC-------TACTTGCTTACAGTAGACTAAACATAGTCTCATT---AATTA--ATAAAATTCTAAGTACAGC---------ATCACACTGTG------AAATTCCTCCTACCCAAGATATGT---------------AGCTCTAGCACAAAATTTCCAGTAGCTgccagacagtgctcatggcatcccagcatttaagaggct--------------aacacagg--------------------------tggaact-----------------ctgagttc------------------------aaggctaacctggtctacaga------gtgaggtgt------gggata-------------------------gccaggcctttacagagaaaca----ctgttctcc-------------------------------------ccaaa-------caaaacaTC------------AACAACAACCCCAACAGTTACAA-------AACTTTTACT-----------CCAAagccgggcagtagtggcgcatgcctttaatcccaacacttggggggcagaggcaggcgggtttctg--agttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaACAACAACAAAAAAAATT
s HiC_scaffold_1 140200604 869 - 233722169 AGTGTACAGTTATTAACAGGGAAGAATAGCTGG-CTGCAAGTCATAGCAAGGAGCTCAAGCTTCTTCAGCAGATACACAT-CAGATCTACCTCTCTTACGGTTCACCCCACAGCACAGAAAGTTGAAACctaatgaagaaaaacagaaaattaccaCTTACTTCTGGGATTCTATCTGTTACCTATTTACAGTAGAGTAAATatactaaaattcaaaattatgaacaaaatctAACTCTACCAATATCTTTACCACACTGTGCACTGTGAATTTGTTCAAGCTAA---ATGTTCAAAAAGAAGTAACAGCTGTTAAACAGTAATTCCAGGAGCAGACACAAAGCATTTATTCCA---AAGCATttcatgggttttttttgttttttggagatagggtctccctatgtagtctaggcttgccttgaacttgcaatgatcctcctgcctcagtccctagTATCACAAAAAAGCTGTTCTAAGGTAATCATATCCCCTAGAATATCCGTGAACTATAAAACAGGGATATTCAATTTCAGCCTATCTCATATATGCCAAgacttgaaaaatatataaaacttgcACTCTAACTTATTAAACTATGCTGGGGAATCATAAATCATtactaaaataatttcagaacaCCTAAGCCAGCCAAGACAAAAGCCACAGCAGGGAAAACCCAGTCAATTTTcaccaaaatacaaaattgaagccaggta-tggtggtgtactcctgtaatcccagcactcaggaggttgaggtaagaggatccttgcaaattcaagaccagcctgggctacaaagtgagcccaagaccagtcTAACCCAGGTAtcgagaccctgtgtcaaaaaaaaaaaaaaaaaaaaaaaaaacatt

a score=6890
s chr3           95090619 92 + 160039680 CTCGGTCTCTCAGTCACTGTCCTCTTCATCTCCCTG-TTTTGAGTCCACAGTGGAGGGTCAGAAGGATCTATTGGAAACACATCACTGAGACC
s HiC_scaffold_1 41910217 93 - 233722169 CCCGGTCTCTCAGTCACTGCCCTCGTCATCTCCCTGCTTTTGAGTCCACAGTGGAGGGTCAGAAGGATCTATTGGAATTCCATCATGAAGACC

a score=6935
s chr3           95090622 89 + 160039680 GGTCTCTCAGTCACTGTCCTCTTCATCTCCCTGTT-TTGAGTCCACAGTGGAGGGTCAGAAGGATCTATTGGAAACACATCACTGAGACC
s HiC_scaffold_1 41908924 90 - 233722169 GGTCTCTCAGTCACTGTCCTCCTCATCTCCCTGCTATTGAGTCCACAGTGGAGGGTCAGAAGGATCTATTGGAATTCCATCATGGAGACC

a score=4730
s chr3           95090627 84 + 160039680 CTCAGTCACTGTCCTCTTCATCTCCCTGTT-TTGAGTCCACAGTGGAGGGTCAGAAGGATCTATTGGAAACACATCACTGAGACC
s HiC_scaffold_1 41906495 85 - 233722169 CCCATTCCCTGTCCTCCTCATCGCCCTGCTGCCAAGTCCACACTGAGGGGTCAGAAGGATCCACTGGCATCAGGTCACTGAGACC

a score=10200
s chr3            95094855 618 + 160039680 TCTGAGCAACCCTGTACCAG---TTAGGGAAGCATTCCAGTTTGGTCCTTTGCAGCACCCTATCTTATGTTTACAGAGAAAAAGATACTGGAAGGACTGGTTTCTAGTTACTCTGCAAAACACCACTGTTAATCTCTGCAAATCTGCTTGGTAATACCAGACAACTCAAAAAGTTGGTGGGCTCACAAAATTTTACACCTACAGTAGTAAAAATAATATTAAATTGAAAAAAGAAAATGTCAAAAAGAAACAAAAATTATCAACATAATTCTGagaaatgttaagttcagttcttagcacacacaacaggaggctcacagatgcctgtaagtcaagctccaagggatccaatgtcctcttcttgccttggcagacactggcacacaaatagcattcactgacatgatacacacagatacatataaacttaataaaAGCAAATCTTCAAAAATAAAGGTGACAATTTAAATGAAAATATGTTCAGAGAGTAGAGAACTCTGAAGTGAGTTGGG----CCTCCCTAGTATGTGGAACAATCAGCTTTGGCCTCAATGTCAAAGCCTCTCCCAACTCTTTCAGAAAAGCAGCATTTCCTTTGGAGATGAGATGACATCATTCAGCAGA
s HiC_scaffold_1 140201644 439 - 233722169 TCTAACCAACTCTGTACCAAGTCTTAGGGAAGCATTTTATTCTGGTCCTT-GCTCCACTCTATCTT--GTTTGTACAGAAAAAGATACTGGTAGGGCTGGTTTCTAATCACTTGGCAAAACACC-CTGTAATTCTCCATGAATATGTTTGCTACTACTGAGTCACTGGAGA-------------GTAAAATTC----CCT----------------------ATTGAGAAga------attacaaaagagaaaaaact-tcaATATAATCTTGAGAAGTGTAAAA-------------------------------------------AAGTCAAACTtcacag-----------------------------------------------------------------------------------------agaaaaattatttaGACTTAAAAGAGACAATTTA----AAGATACTGTCAGACAGTAAACAGCTCTAAAATGAGTTAGGCTTACTTCTCAAGCATAGTGAACATAACAAAGTGGACTTAATAGCAGAGCCTCTCCCAACATTTTCAGCACAGAAGCATTTCCGTCAGAGATGAGAGTGTTGCAGGCAgcaga

a score=8118
s chr3            95095453 199 + 160039680 AGATGACATCATTCAGCAGACAAGAAACCAAAAGACACTGT--GTGACTGACTGCAGTGTCTCAAGTACACATATAATTTGTGGATGCTAGAGGCTAACCGGACATACATTCCTCTGAC-----TAGTTTTGCCTGAACAAGTCATAGACAAGGTATCACAAAGACTCAATCCAGTG-TTTACCAACAGTACAACTTAAATGTTTCA
s HiC_scaffold_1 140202688 206 - 233722169 agATGTCTTCACTTACCAAACAAGAAACTAGGAAA-GCCGTCAGTGACTGACATTAATCCCTGAAGTACACATGTAATTTGGGGACACTAGAGGCAAACCGGATGTGCATTCCTCAGACAACTGTGGGCTTGCCTGAACAGGTCATAGAGAGGCACttccggagatcaaactcagtgATCTACAGACACTGCTACATAAATGTGTCA

a score=47440
s chr3            95104198 5424 + 160039680 [encoded data, 5946 characters]
s HiC_scaffold_1 140212129 5102 - 233722169 [encoded data, 5946 characters]

a score=19290
s chr3            95110926 418 + 160039680 AGACTTAAGGTGAAAATAACTAGGA--------------CCTCTCGACGCTCGGCTGCTTTTGCTTGCAGACGCTGAACTTCCGTCATTGACGGTCGCCCGCAGGTAATAGTGTCGAGTGCCGATCTGCGAGAACCCCGAGCTGGG--CCAGGGGCTGAAGGCGGCAGCGCAGTCGCTGTAGGCGGTATGAGTTTGGCTGGGGGCCGGGCCCCACGGAAAACCGCTGGGAACCGGCTTTCTGGGCTCCTGGAAGCAGAGGAGGAAGATGAGTTCTACCAGACAACTTACGGGGGTTTCACCGAGGCAAGAGCCGGGCCCAGGAAGAGGGAAAGAGAGAGGCGAGGAG-----------AAGGGAAAACCCTGGACAAAGAGGAAGGGGGCGGGGATTGAGAAAGGCTCGGAAAGGCGCTCCGGGCTGGACGGCGGAGTGGAGGGG
s HiC_scaffold_1 140218375 427 - 233722169 AGGCTTAAAGGTAAAAGGATTTAGAGGCAGGACGCGGAGCTCCCCGATGCTCTGTTGCTTATGCCTGCAAACCCCGG-CTTCCGCCGTCAGCGGCCACTCGCAGGTGATGGTGTTGAGTGCCGAGCTGCGAGA--TCAAAGCTTGGTGCGAGAAGTCGCTGGTGGCAGCGCTGTCTCTGTAGGCGGCATGAGTTTGGCTGGAGGCCGGGCCCCCCGGAAGACCGCAGGAAACCGGCTTTCTGGGCTcctggaggcagaggaggaagatgagTTCTACCAGACGACTTATGGGGGTTTCACAGAGGCAAGATTCGGGCTCAGGAAGGAGGGGAG---GTGGCAAAATGCAGCAGCCCCTAGGGAGAAAGCCCAAACAAAGAAAGGGGTGGGGGGAAT------------GTAGGGGCGCTCCCGGCCTGGTGTTGGGACCAAGTGG

a score=12251
s chr3            95113842 949 + 160039680 TAACTGGGAGCCACTATGTACACAGCTTTAATAAACTAGTTTAAAA-TAGATCTCTCTCATCCTTCCTCCAAGGTTCATTTCCTATTCCTGTCGTTTTATGAGTCGCTATTTAATACATGCACCTCATGCTTCCAGAAAGGATATATAAAAAGGCTTACAATGGAAACAAAAATTAGGAATAGTAAAAGTAGAAAAGGTGCCGAACAAAATGTATTTTATTAATGTGTGAAATTTTTAAATAATGAGTAAAATTATGTACATATTTTTAAATCAGAAGTAATTTTGCCGAGAATCCATGTTAAAATGGAAATAGCATTTGATGGCTGTGAGTTTCCTAGCAGTCAAACTAAATTTGTTATGACTGAAGTATACAGTATATTCAAGAAAGACAAATTgggctggagagatggctcaaagttaaaagagtactgactgttcttccagagatcctgagttcaattcccagaaaccacatggtgactcctcataatcatctgtaatgggatctgatgccctctttgggtatgtctgaagacagctacagtgtactcatataaataaatcttttttttttttaaggatttaaaaaaaaaaGTCAAATTTATTTAGCATTAAATTCCAGGGAGAATTTCTTATTATATGAGGTACAACTAAAGTAATCAGGGGCTTG---ATAG-AGAACATTCTCT-------TGCTGTGTATTAA-----------AGGACCCAGTGCTATAACAGTAAATCCATAGTGCCCTGAAAACACTAAGACTAAGCA--GTAACATAGTAGGAACTTGATCTCCCCT---CTGGTGATGTGCCTTAATACAAGAGTAGAGCTGAGAGAGTTCATGTGTTCTGAGTC--TCTTTCACAAACAGTAGTTAGGAAGCGTAGTGGTCGTTTGTG------------CTGGCTAGCTTAGAATTTCAGCCATTTGT--TATTTGCTTGCTTTGACAGCATGTGTACC-----CAATCCATT
s HiC_scaffold_1 140221926 732 - 233722169 taggtgtgtaccaccatgtcca--gct---accaattaatttaaaaatagaactctCTCATCCCTCCTGCAAGCCCATTTTCCTATTCCTGTCATTTTATGAGTCGTTATTTAATATGTACCCTTCATGCTTCCAAAAAGG--ATTTAAGGAGgctt---atataaacaaaaagtaaGAACAGTAAAAATAGAGA------------------------------------------------------------------------CAGACCAGAAGTGGTTGTACCAGGAGCATATGCTAAAATGGTAACAGCAGTTGAT------------------------ATTAAATTTAT-----CTG------------------------------TGAGC------------------------------------------------------------TTTCTGGGAACCAaattttgacttttcttttttttct--------------ttctttcttttttttttttt-------------ttttacatgcatGAAGAAACATGCACATTCTTCAAG-----------AAAGATAAAACTTACTT-TCATTAAATCTTAGGGAGAAT---------------------ATAAAGTCACAAGTGTTTTGTCAATAGAAAAACATTCTCTGAATTAGTCATGTCTATTAATGATGCTTGATAAAAAGCAGTGAAATGGTAGTAAATCCTTGCTTTGGTGACAGCATTTTGATTGGGCACTTTAAGTCCATGGGAAGCTGTTCTCCCATCACCTGGTGATATG-CTTAATACCAGACTAG-GCTGAGGGGATTAATGTGTTCCCAGGCTGTCTTTCACAGACATCAGTTGGGAGGA--AATAATCATCAGGGCAGGATTAAGCTCTGGCTGATTTGGAGTGTCAGCCATCTGTGCTGCTGGCTTACTTTGGCA-CTTGTGTATCAAGATTAGTCCATT

a score=32668
s chr3            95117933 1463 + 160039680 CTTTTCATTGCAGTGTCCTATTGGTCAGTAAATGAGGGCAAACCACATTCAGAG------CCTTTAGATCCCTAGTAATTGACGTGGAGTTTTATAGAGGTCAATCTCCAGTAACAC-------CAGGAAACAGTGGTACTA--AGCTAAGAACCGTCAACTGGGAAGACTTTGTCTGTGGGGTGTGAAGAGCCAAATAAGA---AAGAATTGGATGGGCCTTATCAGGGGAGTGAATTGATCCACTTCCTCCTCAAGGAACATTAACGGAGCCATGGCCGGCCAGCTCTCATCT--CCCTGTATCCTCAGGAATCTGGAGATGATGAGTATCAAGGAGACCAGTCTGATACGGAGGATGAGGTAGACTCTGACTTTGACATTGATGAAGGGGATGAACCATCCAGTGATGGAGAAGCGGAAGAGCCAAGGAGGAAGCGCAGAGTCGTCACCAAAGCCTATAAGGT--AAGAGGA--CATGGTTTCCTTGGTCTTGTTTAATTTTTTCTTACAGGGTGGGCTGGAGGTGGGGGttgtttgtctgaaacaatgtcttgctatgtagaacaggctgcctcaaaggaaaggagtccagcctgcctctgcccaccatgtcttggggtttaagccccagctctgcctggctTAGGTGTGTTCTCCTCCTCATGCTGGGTGCTAATTTTCTCGGATACAATCCTCACCTCTTATTT---TCCGGTGTCTGTTTCTAACTTGTCCCCAGGAGCCTCTAAAGAGCTTGAGGCCTCGCAAGGTCAGCACCCCAGCAAGCAGCTCCCAGAAGGCCAGAGAGGAGAAGACGCTGCTGCCACTGGAGCTCCAGGACGATGGCTCTGACAGTGAGT------TTACGTC---TGCAGACCCTGAGGTTGATAATTGTTGATT---------------------CTAACGAGAATCCTCtgtgtgtgtgtgtgtgtgt-----------------------------gtgtgtgtgtg---tgtgtgtgtgtgtgtgtgcatgtgtgtgc-atgtgtgACTTTAACCCCTTCCACCCCCAAAAAAGAAAAGAAAATGAAGCTAGAAATGTgccggctatggtggtgcag--ctctgattccagccctccagaggcagaggcccgaggagctct---gggttccaggtcagactggcct--acagtgaattccaggacagccagagctgcacagtcagaac------------------------------------------------------------------------------------------------------------------------------atacat------------------------ttttttaaaa------------------------------aaaaaaaaGTAGAAATGAATTCAGAGCTTTCTTCCCATCTCACTATCTGCAGGCCGCAAGTCTATGCGTCAGTCTACAGCTGAGCACACACGACAAACGTTCCTTCGGGTTCAAGAGAGGCAAGGACAGTCCCGGAGGCGGAAGGGTCCCCACTGTGAGCGACCACTAACCCAGGAAGAGCTGCTCAGGGAGGCCAAGATCACTGAAGAGCTCAACTTACGTTCACTCGGTCAGTCTG--GTTTGGGGAAAATAGGTGCATGAGAAAAGCTGAGACCTAGAGGACCAGAGAACTGGAAACTTGTAGCAGAATAATTAGAA
s HiC_scaffold_1 140223455 1557 - 233722169 ctttttATAGTGGTGTTCTATCCTTCACTAAACTATG----ACCCTCTCAAGAAAGAAGCCCTTTTTTCCCACAGTAATG------------TATGGACACCAG---CAAGTAAAACATAAGATTGAAAATTGGTTGTGCTGGGAGCCAAAGGCCATCAGCTAGAAAGGCACTGCCTGAGGAAACTGAAGGGCTGAGTTGAGCTGGAGAGTGGGGCAACCCTTATTAGGGAAGTGAAAT------CTTCCTCCTGAAGTCACACTGCTGATTCTGTGTTCCATTGTCATTCCACTGTCTCTGTGTCCTCAGGAATCCGGAGACGATGAGTATCAAGGAGACCAGTCAGACACAGAGGATGAGGTAGACTCGGACTTTGACATCGATGAAGGGGATGAGCCCTCCAGTGATGGAGAAACAGAAGAGCCCAGACGGAAGCGGCGTGTAGTCACCAAAGCCTATAAGGTGCAAGAGGAttcctagttttctttcttttcctttccttccccct--------------------------------------------------------------------------------tccctacttccccttcccac-------------ttgaac------------------------attttcttcctattttacagtatctattatat--------attttggtct-ttatttacacctGCTATCTGATTTTAATCTGTCCCCAGGAGCCTTTAAAAAGTTTGAGGCCTCGAAAGGTCAGCACACCAGCTGGAAGCACTCAGAAGACCCGAGAGGAGAAGGCTGTGCTGCCTCTAGAACTACAGGATGATGGCTCTGACAGTGAGTGGGAAATTTGGTCAGATGAAAACAttgtgggccagggatacagctcagcagcacaagcacctgcccacCATACAAAATGTCCTGGGTTTGATTTTtggtctcagaaaaaaaaaagaaagaaaacattgcaGTGTGATGATGCTCTATCAGTGTTAAATTCTTCAGTTTAGTACTATGTTTAATACTAAGAGCAttca-----gaaaaataacacagaatga-GCTTGAG----------CATGGTGGCAGAtgtttataattccagcactcaggaggctgaaccaggaagatcccccacaagttcaaggccaacctgggctgcacagtgagt-ccAGGCtaccctgaactatatagtgagaccctgcctcaaaaaaagccAGCCTAAACCcagtatagtgaaaccctgtttccaaaaacaaaaacaacaacaagtaaaagatacaaaatgaaatgaagcaaCATTAACATCTGGGAATGTAAATGAAAGATACATGAGTATTGTTTCTACTATTACAGCTTTTTTataagtttgaaattatttccaaattaaaatagagaaaataaactaGACACAAATTCAAAGATTTATTTACATCTGATTCTTCCCAGGTCGCAAGTCCATGCGTCAGTCTACAGCTGAACATACACGACAAACATTCCTTCGGGTACAGGAGAGGCAGGGCCAGTCTCGAAGGCGGAAAGGGCCCCACTGTGAGCGACCCCTGACCCAAGAAGAGCTGCTCAGAGAAGCCAAGATCACAGAAGAGCTCAATTTGCGTTCACTGGGTCAGTATGTAGTTTTGGAAA---ATGTGCAT-AGAGATGCTAAGAC-------------ACATCAGAAATTTGGAACAgaagaatcaaaa

a score=14429
s chr3            95121198 216 + 160039680 GACAGG-CCAGAGTGTGGGAAAGGAAAG----CTGACCATTCTGTCGTTTCTCCCTTCGATCCTGCAGAGACCTATGAAAGGCTGGAGGCTGACAAAAAGAAGCAGGTTCACAAGAAGCGGAAGTGCCCTGGGCCAATAATCACCTACCACTCAGTGACGGTGCCGCTTGTTGGGGAGCCCGGCCCCAAGGAGGAAAATGTGGACGTGGAAGGGTGAGTGA
s HiC_scaffold_1 140230534 220 - 233722169 GACAGAACTGGAAtgtgggaaaaggaaaaactctgaccatccc-tccttcctccctttgaTTCTGCAGAGACATACGAGCGACTTGAGGCtgacaaaaagaaacaggttcATAAGAAGCGAAAGTGCCCCGGGCCCATAATCACCTACCATTCCATGACAGTGCCGCTTGTTGGGGAGCCGGGTCCCAAGGAGGAGAATGTGGATGTAGAAGGGTGAGTGA

a score=31258
s chr3            95122330 628 + 160039680 TCCTTTGTCTGTCTCCGCAGCATTTTGTGACTTTTCTCTTGCCCTCAGCCTTGATCCTGCTCCTACAGCCTCTGCACTGGCTCCACATGCTGGGACCGGGACTGGAGCTGCCGCTGCCACCCCTCCTGCTCACTGCTCTCGCACCTTCATCACGTTCAGTGATGATGCAACGTTTGAAGAGTGGTTCCCCCAGGGGCGACCCCCGAAGGTCCCGGTGCGGGAGGTCTGCCCAGTGACCCACCGTCCAGCTTTGTACCGGGACCCTGTTACAGACATACCCTATGCCACTGCTAGAGCCTTCAAGATCATCCGTGAGGCGTACAAGAAGTACATCACTGCCCACGGACTTCCACCCACCGCCTCGGCGCTGGGCCCCGGGCCCCCACCCCCCGAGCCACTACCTGGCTCTGGGCCTCGAGCCTTGCGTCAGAAGATTGTCATCAAAT--AGAGACACCTGACCCCTAGACAGTCCCTCTCCTGACCTGGCTC-------------TCCACTCCGCCCTCC--------------------------CTTCTGCCAACCTTCGCCCTTGTTTCCCTCAGTTCCTC-CCTAGTTCATTTCATTTACTTGTGCTCTTCATTTTTTTAATCTAAT-AAAATGGTAAAATCCtttttgtctgatgtgtaaggttggg
s HiC_scaffold_1 140230986 649 - 233722169 TCTGTTGTCC-TCTCCTCAgttgtttttctctgt-cttttgccCTCAGACTTGATCCGGCTCCTGTGGCTTCTGCATTGACTTCCCACGCTGTGACCGGACCTG------------TCATCCCTCCTGCTCATTGCTCCAGGACCTTCATCACATTTAGTGATGATGCAACATTTGAGGAATGGTTCCCCCAAGGGCGACCCCCAAAGATCCCTGTTCGGGAGGTCTGCCCAGTGACCCATCGTCCGGCACTATACCGGGACCCTGTCACAGACATACCCTATGCCACTGCACGGGCCTTCAAAATCATCCGTGAGGCTTACAAGAAGTATATCACTGCCCATGGACTGCCGCCCACTGCCTCATCTCTGGGCCCTGGGCCGCCACCTCCTGAGCCCCTCCCTGGCACAGGGCCCCGAGCCTTGCGCCAGAAAATTGTCATTAAATGAAGAGATGTCCGGTCCTTAGA-AACCACTCCTCTGCTCTGGCTCGGGCTCTTAAGCTTCCCTTCTGTCTCCCTGCTTCTTTCACTGATCATTTCTGATCTTTTCCAAGTCGTCTCtatttttttccccatcttttCTCCTGGTTC-------CTACtggttttgttacatttttaaatctaATAAAAATGGGATGGTCCGTTTTATCTGGTATCTAATGTAGGG

a score=144840
s chr3            95124269 4508 + 160039680 [encoded data, 4914 characters]
s HiC_scaffold_1 140232039 4528 - 233722169 [encoded data, 4914 characters]

a score=4531
s chr3           95126442 94 + 160039680 CCAGCACAGGAACAGATTACGCTGGAGCCTGAGCTGGAGGAAGCGCTGTCCCATGCTACAGATGCTGAAATGTGTGACATTGCAGGTGGGCAGC
s HiC_scaffold_1 59094043 94 - 233722169 CCAGTGCTGGAAACTGTCACACTAGAGCCGGAGCTGGAGGAGGCCTTGGCAAATGCCTCAGATGCAGAACTCTGTGACATTGCAGGTAAGAGGC

a score=4100
s chr3           95127319 116 + 160039680 CCTCTGCTTCCCCTCACCAGCCATCCTGGGCATGTATACACTGATGAGCAACAAGCAATATTATGATGCCATCTGCAGTGGAGAGATCTGCAACACAGAAGGCATTAGCAGTGAGT
s HiC_scaffold_1 59100834 115 - 233722169 CCTTCTTTTGTCCCCAC-AGCTATTCTGGGCATGCACACGCTCATGAGCAACCAGCAGTACTACCAGGCCTTGGGCAGCAGCTCTATCGTGAACAAGGAGGGACTCAACAGTGAGT

a score=6253
s chr3           95127567 155 + 160039680 TTCTGCTCTGTTCCTCATC--AGGTGTGGTACAGCCTGACAAGTATAAGCCAGTACCAGATGAACCTCCAAATCCCACAAACATTGAGGAGATGCTAAAGAGGGTACGGAGTAATGACAAAGAGCTGGAGGAGGTGAACCTCAATAATATCCAGGTA
s HiC_scaffold_1 59101796 157 - 233722169 TTGTATCTTGTTAATCACCCTAGGTGTGATTAAACCTACACAGTACAAGCCTGTGCCTGACGAAGAACCAAATTCAACAGATGTAGAGGAAACACTGGAGAGGATAAAGAACAATGACCCGGATCTTGAAGAAGTTAACCTCAATAATATCCGGGTA

a score=4890
s chr3           95128597 153 + 160039680 AGCGCCAGTGGCCTGGTGATGCGGTAGAGATGGAGATGGCCACTGTGCTAGAGCAGTGTCCGTCTATTGTCCGCTTCGGGTACCACTTTACACAACAAGGACCACGAGCTCGGGCAGCCCACGCCATGACCCGGAACAATGAGCTGCGTGAGT
s HiC_scaffold_1 59118177 153 - 233722169 AGAGCCAGCCCCTGGGCAACAAAGTAGAGATGGAGATCGTGAGCATGTTGGAGAAAAACGCAACCCTTCTCAAGTTTGGCTACCACTTTACCCAGCAGGGACCCCGACTGAGAGCATCCAATGCCATGATGAATAACAATGACCTTGGTGAGT

a score=54245
s chr3            95128997 1443 + 160039680 AGCACCTTATGAGTCTGCCCAAGGAAAGGAAAGAAACGCACCCTTGCCAAAACAACA---AATGGAGCTCTGTTTACGGCTCTTCCTTTCCAGGTCGTCAGCAAAAGAAGAGATAACATCACCCTTCCTTTTACCAACAAGAGATGAGAGCCTGGGACGCACAGATCCTCATCTCTCTCTCCTTTCCTGTAAATAAAATCCCTTTTGTTCACGCCGCCTGTCTCCTTGCCTGGA--TTGGGGTGGGAATCTTGGCGCTACCCTCCAAGGGTTACTGCCAGTTCATCAAGAGATTATTTATACTCTGGGGATCAGCAGGCAGGG--GTTCAGGTTACCAGGAGA-GGGGGAGCTCTGTCCGTTG-TGTTCCCCATAAATCTGCCAAAGGCTTTAGTCTCTC-------AGCAGGGTACTTGGCCTCAGTCCTCTGTGACAAAGCTGTAGACAGAGGTGGCCAGAGCCCCTTAGTGCCTAGCCACAGT------GTGATCTGT-GAGAAAAGGACTC--ACTGGAGGCGGGGAAGGAGTCAGACTCCATGAAGGGCAGCGACCTCTTTCTGACAGACTTATTAATAGGGCACCGGGCTGAAAGCAGCTGACGCTTGGCAAGGTTTTGAGAGAAAGTGGAGGAGGGGCCAGAAGTATGGGGAGCCATGTACCTTGTAGGGAAGGAGTGGCCAGCCTGCGAAGGAGCAGACTTGAAATCCTGAGACTGAACAAGGAACCGGACTCCAGGATCAGTGTGCTCCCAGGACCCACTGCAGTTTATTTGTAGGACAAATGGGGAAAGGGGTTATTAATGTTAGTCCAAGGGGAGATCGGGGGGCTCTTCCTCATCAGAGTCAAACTCAACATTTTCATCCTTTATCCATCGACCTCGTCCATCTGGGACCCATCCAGAGCTGCGAGCAGGAGAGAAAGAGAACTGGTCAGGGAGGAGATTTATGAAAGGCTTC---------CTGTG------------------------CTGCGTTGCATCCCAGGAACC------------------TACAGCATAGGAAGGAAG-------AACCAACCCCTGTAAGCTGCCCTCA-------GACTTA---CAG--AAGTGTGCCC---CTATAAAGATAAATAAGCAAATACAATTTTTT-----------------------------------------AAAAGGTTACTGGTGATAAGAAAAAAGCAGTTGGATTGGTCTG--------------------------------------AAAACAGGCAGGT-----------------CCCGGG----------------------------------------------------GAAATAGAAGGAAACC----------------------CAAGGACCGCAATCCA-------GCACT----CACTCACCTTCGGAGGGTAAGGTAATGGTTCAGGACTCATCGTTTGGTGGGGCTCATGGGTGCAGAGGCCAAGAGAGCTGCTGACTCTTTGGCATCTGATCTCTCCCTAGGCTCAGGTTCCTTACTGATCTCTGCACTCTGGAGTTGGACCTCTGCAGTTGGCAAAGGAGGACTGGAGACAGAGGGAGCAGGGGCTTCTGGTCTGGGCAGTGAAGAACCAAAGTGTGTAA-AACTAAGTACAGGAAAGCAGCAACTTCCCCATGGCCCCCAAGCCAGAAGAGCAG
s HiC_scaffold_1 140237445 1676 - 233722169 AACACCATATGCATCTGGCTAAGGAA----------------CTTGCCAAAAGGAGATGAAATGAAAGATCAT--ACTTTTCTTCCTATATAGGTCGCCAGCAAAAGAAGAGATAACACTGCCCTTTCCTTTACCAACTAGAACAGGAAGCCCTGGATTCATAAATCCTCATCTCT-TCCCCTTTCCTGTAAATAAAGGCCCTTTTGTCCACTTTGCCTGCCTCCTTCCTTGGGCTTTTGGGTGGGAATCTTGGCACTAACCCCTAAGGGTTACTGCCAGTTCATCAGGGGATTATTTATACTCTGGGGATCAGCAGGCAGGGAGGTTCAGGTTACTAGGAGGTAGGGGAGCTGCGTCCCTTGGTGTTCCCCATAAACCTGCCAGTGCCTTCAGTCTTTCTTACTTTCATAGGGTTCTTGGActcatttct-------------gtttccagatatGGTCAGATTTCCCCAGGGCGTATTCAGAGTCCTCTTATGATCTGAAGAGGGAAGGACTTTGAATGGAGTTGGGAACAGAGGAAAACAACATGAAGGGCAAGGACTTCTTTCTGACAGACTTATTAATAGGGCACCGGGCTACGTGCAGCTGACGCTTGGCATGACTTTGGGGTAGAGTGGGGGAGGGGGCAGAAGTA-GGGGAGCTGTGTACCTTGCAGGGAGGGAGTGGTCAGGCTGAGAATGAACAGATTTGAAATCCTGAGATTAGACAAGGAACCTGACTTAAGCAAAGTTGGGCTCCCAATGCCCACTGTAGTTTATTTATGAAACAAATGTAGAAAGT---------TGTCAGTCCAACAGGAGATCAGGGGGTTCCTCCTCATCGGAGTCAAACTCAACATTTTCATCTTTTACCCATCGACCTTCTCCATCTGGGATCCATCCAGAGCTGGAA--ATGAAGCAAACAGAATTGGTTAGGACAGAAGTTTATTAAAAAGTTagtggcggggctggggatttagctcagcggcataagcgcctgccttacaagccaggcagtcatgagttcgatccctggtacag-ataaaaaggaaagagacaaaaaaaaaaaaagttggctggtccgaaggtagtgaCTTATTTCAATTaattgttcacagtcagtacagattgaactccttgttctactctttccccccttctcactatTGCACTTgattagtctttaaaaaaaaaaaagttagtggcaataaaaaagaaaaactagagtcAGGCGgtgatggcacatgcttataatctcagtaTTTGGGGCAttaagacaggaagattgcaagtttgagaccagcctgggctagctaaaggccagcttggactacatgtgagacactgtctgaaaataattaaaattaaaaggaaaacagataCGTTAGAAAAAGGGGATCAAGGAGAAAAATCTGAGGAAAGGGATTGGAATACCCACCTTCGAAGAGTGAGATAACGGTCCAGGGCTTGTCTTCTTGTGGGGCTAATGGGTGCAGGGGCTGAGGCAGTTGTTGACTCTTTAGCCTGTAGGCCAGACCTAGGCTCAGGTTCCCTACTGATCTTCTCACTCTGGAATTCAATCTCTTGGGCTGGCAAAGGGGAACAGGAGATAGAGGGACTAGGGGCTTCTGGTCTGTGTAGAGAAGAATCAAAGCCTGTAAGAGCT--GTGAAGGAAAAGGCCAACTCTTCTATGACTTCCAACTCATTAGAGcag

a score=83682
s chr3            95132751 2865 + 160039680 TGGAGAGCAATAACTTTAAAGTCATCTATTTCCTTCTACCCTTTTCCACTCCTGGCTTTCC---CATTCCACGGACCTGTGCTTCCTCCGGCAGCAACTGTTATAGTGGGGAGCTCTGTGTAGAGCATTCTGGGTGATGATTCGAGTCTGGGTTAGCAAAGGAGCCTGGTGATGA--AGAGACAGAGTTAGAGCTGTTAGGAGCAAACGTTCCCTCAAGCCTGTTGTGTGAAGTATAGCCCTGTCTAAACCACACCTGATGCCCTCTC-----ACCTCAGTTTTG---CTTTCTGTCTTCAATTCGTTCTGCTGTCTTGGATTTTGCTCTGTTCCCTTGCCTGTTTGCTTTTTGCCATAGAAAAGCTTCAGACCTGAGAACAAAAGCAAGGAGGAATGAAAAGCACAATGCC--TGGTGGCTTGCTCTCCATCTCCCGCCCTCCCCACTTCTCTGATACTTACTGGACAAATGCTTCTTGCCTGCACGGTGGGCTGTCAACATGGCCAGCGTGTCTAGTACTGGTCGATGGGGGCAGATGGCACAAGCAAAGCTAGG--GAAACGAGAAGTGAATGATGTGTGTGGTGTGTGGTGTGTATGTTGTGTGTTCGAGAGCCTGCAGTCGGGGTGTTCTTGCTATGGTGAGTAGGTCCTACTTCTGTCAGAGTACTCCACCACCAA--CTCCCAGGTTTCCCGATCTCCACCCCTTACA--CTTCACTTCCAGCCA-AAGAGTCCTATTATACTCCTGAACTCCTTAGTGACAAAAGTTTGTTGAGCCTTTGATCCCCGAATCCCCAGGCTTGATCCACTCTTCGCTCTCACCGTCCATCCCGCAGCATCAGTGCCTCGTCCTCAGGGATGTAACTAGCCAGCAGGTCCCCAACTCTCCGTTTCTGCAGGGAGCAGGATAGGA---------GAAATGAGTAAGAGGGACGGATGGAAAT----GAAATAGTATGGATAAGGAGTCAAATGGCACACGGGGCTATGCA--------GATCATAGGGTAGTAGGGGTCACCACTCAGTTCTGGTCCCCTAA--GCCCTCCCCTAGATGTCGCCAGAGCAACAAAACAAAACAA----CAGGGCGGCTGAAGG---------TGATCAGACTCTC-ACTAAGGCTTACTTTGAGCACATTGAGTTGACTCCAGTCGTCCCCTTCCCTCTTAAAAGACAT-AGCGACTGTGAGACT-----ACGATAAATTCCCCTACGCCTACTTCGCTGCTCCTTTAGGCCACCGTAGAAAGAGTACACTATCGCCTTCTCTGCTTCCGGTTTCTTTCTTGTTGAATCT-GTACTTCCGGGGATGATGTTCCACGCTTGCGTCGCGCGAACCGGAAGACCCGCCTCCAGCGCCCTGAGGGGGCCTGCATTTCCTACAATACTTTGAGACGC---------TGTGCCTTTTGGGAAATGAAGTCTTTTGGttatttattttatttttttatttttttGAAGAGCACACTGCTCACCTGGACACAGGACCTCACATCTCGAAGGATCC-AGGTGTTCGGAGACTCAAGATCCTGTATGTGGAGCCGGAATTTCAGGGTGGGACCTTCCTGATGTG-GAGCGAGGCGTCAGGGATCTCAG--TGGACTATATACTACAAACTCTTGCTGTCCTCAGGCTCGTACTCCTCAGCCACAACCTACCTGGGGTGGGCCTTATTTG------------------GAACAGAGAG---------------GATGTGGGAGCACCCGGCATCCCGACTGTTGGATGTGGGGATACACTGAGGGAAGAGTGTTGATGAGGGTGTCTAGGGTTCAAAGGTCAGAGATCAGGCTTGCGAG---GAGTTGGGGA----GGGGGCGTCGAAAGTCAACCGGGTCAGCGACTGACAGCTCAGGGAAGATACTTATGGGTAAGGAGCTCGTGGAAAGAGAAATGTAACCGGCCTGGCAGACTTCTTAAGAGACGGACAGTAACTCCAGGCACGGCAAGAAGCAGCAAGAGGAGGACGACGAATGTAGTCTCTCGAGAGTCGGGAGACTGTAGAGAGACGAGAGAAGAGAAAACGAATTATCTGAATATCCATTCCTTGGGTTCGGCCGTCACTGTTACTTAGCTGGGCTTCCCTCAGTTGTGACCCTAGGTCTTGACAGTGAGGAGATGGCTTCTCCCTCTAGACAGCCTCCCCTCGGGGGGTCAGGGCTGCTGCATGGGAGCCGTGCTCGTTCTTATGGAAGCCTGGTACAATCATCCTGCTCCCCAGTGAGGGAAAGACGCCTGGAGCATCAATTGGAGCCTGGAGACACCCTGGCTGGATTAGCACTCAAATACGGGGTAACGGTGAGTCTTCCAGAATTGAGA-------------------------TAGTCCCGA-GAAAGTG-GGTGGCCCGCT-AAGATGCCCCCTCTCACATTATTTAAATTCTATTATGGTCTGTTTTTTTTCTTCCTTATTTTGCTTTCACATCTCAGCAGAGCACT-----GTTGGGACAGA-TCTGCCCAACTATCCCAGT-GGGAGGAGCAACTCCTGTAGATGGTGAGGGA-----------------GGTGGGTGAGTGGGGGCGGGGCTTACAGCC--ATTAACTGGAC-----TTGTGTCCCT-----------------------ATCAACTTAAGAC-Tgataaaccagtttgatcaaggtcgaatcacttaagtgtcagagtaaggtt---------tctgtctgactctaaagccggtactattagccaTGCgggggtggggtaggggtgggggtggggatgTAGAGACTGGTAAGGAAGAGCTGACTTTTA---CTAGCACTCTGAAGGTGCCCATTTGTAGTTCTTATTTCCACCCCAAGGCTCTGTTTTCTTTGTGCAGAGGCACAAAACAAGTCCCCTCTACATACTTCAAGTGTTTCAGGTCATCTTTAGGAGAGGTTTGATGGGCATA-AAAAATATCTTGCATTAAAGTTGCAGCCTTCCTGTCTATA----TCCTGTTTTACCACATACAAACAAATGTTGGGTTT
s HiC_scaffold_1 140240531 2862 - 233722169 TGGAAAAGAGTACTCATAGGGCCATCTAtctcttcctgtcttttcctACTCTAGGTTTCCCACCCTTCCCACAGACCTGTGCTTCCTGCGGCAGCAACTATTATAGTGGGGAGCTCTGTGCAGAGCACTCTGGGTGATAAGTCGAGTCTGGGTTAGCAGAGGAGCCTGGTAGAGACAAGAGACCAAGTTAGGTCT--TAAGAGGGAACAGTTCTTCCAGTGTATTGTGTGCAGCAAGGTCATTCTTGGAAAACAGTCTTCTCCCTCTCCGATTACCTCAAGTTTGGTCCCTTCCTTCTTCAATTCATTCTGTGGTCTTGGATTTTGCTCCATTTCCTTTCCTGACTGATTCTTACCATAGAAGAGCTGCAGGCCTGAGGAGAAAAGGAATGAG-AATTAAAAGCATAGCAGCAAGGATAGTCTGCAGTTTATTTTCTATCTTGTC---GTCCCTGAGACTTACTAGATAAATGCTTCTTGCCTCCACGGTGGGCTGTCAACATGGCCAGTGTGTCCAGGATAGGTCGATGAGGACAGATGGCACAAGCAAAACtaagaagggaggagaagaaaataataagc---------------------------tCAAG-----GAGATAGGGAGAATCTTTCCAT----------------CCCTGTCCTAGAAGTCCTTTCCAAAGTCTTCCAGGTTTCCCAGTCTCCATGTCTTCTAGTCTTCACTTCTCGCCCCAAAAATTCTAG-ATATCCCTCCTCTCCTTCATAGTTAAAGTTTGTTGAGGGTCTAA---------CCGCAATGTTAATTTATCCCTTGCTCTCACCGTCCGTCCCGTAGCATCAGCACTTCATCTTCTGGGATGTAACTGGCCAGCAAGTCCCCAACTCTTCGTTTCTGCAAGAGACAGGGAAAGAAGTCCAGATGGGATCAGCAGCATATCCGGATGGGAAGAAGGGAAATACTAA----CAGGAGTCATAAAGAATAAGCATCAAGGGAAGAACAGTGGTCATATGG-AGAACGGATCACTACCCAGTTTTGATTTCCTGACTACCTTTCCCAAGCAGTTgccagagcaaaaaaaaaaaaaaaaaaacaatgcttcTTCATAGTCTTTCCTTGCCCTTATTCTCTACTCGCGCTTACTTTGAGCACATTGAGCTGACTCCAATCATCTCCTTCTCTCTTGAAAGACATCAACGACTTTGAATCTCAGAAATGACACAATACTCTCAG--------GCAACTCCTTCGGGCCACCGTAGGAGCAGTGGgacctctcctttccttcttccggTCTCTTTCCATTCGGTTTTCACACTTCCGGGG-CGCGTTTCTACGCATGCGCCACGCGATCCGGAAAGCCTGCCTCCAGCATGCT-ACCCGGACTGCATTTCCCATGGTGCCCTGCGACACCGCAAGTGTTGAGCCTTTtgggaaatgaagtctttt---------------------------tcaaaaaatttgcCGCTCTGCTGGATACTGGCCGTCGCATCTTGGGAGATTAGAGGCTTTTCAAGAGACAAAAACCCAGATGGGTAGCCCGGGTTTGAGGATGTGACCTGACTGATGCGCAAGAGAGCCCTTGAGGATCTCACACTGGAAAGTGTACTGCAAGCTCTCGAAATCCTCACGCGTTTTGTCTGCGGCCGTAGCCTACCTAGGGTAGGCCCAATTTGTTCCTGACCCTAGCGTACGAACCCTGAGACGAGTCCGGGCCAAGATATGGGGACGCCCTGAGGCCCAGCTGCTGGGTTTGGGGGTAAACTGAGGAAA-AGTGTTGAGCGGGGTATCTGCAGTTCAAAGGTCAGAGGTCAGTGTAGCGAGTAAGGGTCGAAAGTAAGAGGGATGTTAAGTGGAGACTGTAACAAGGACCAATTATTCAGAAGACAAATTTGTGAGTAAGGGT----------------TGTAGGTGG--------------------------------------------GAGAAGCCCGGAGGGGAAGAGCGCGGACATAGTCGGCGGAGAGCAGCGAGACACAGGAAAGAAGA-AGCGGAGAATAGGAATTCCCTGATTATCCATTCCCTGAGTTCAG-----GCCGTCACTTGGCCCGGCCTTCCTCAGCTGCAAGCCCAGCTG-----GGTGAGGACATGGCTTCTCCCTCTAGACAGCCATCCCTCGGGGGGTCTGGGCTGCTTCAAGGGAGTCGGGCTCGTTCTTATGGAAGCCTGGTGCAATCAGCTTGCTCCCCTGTAAGAGAAAGACGCCTGGAGCATCAATTGAAGCCTGAAGACACCCTGGCTGGGCTGGCACTCAAATACGGAGTGACGGTGAGTCTTCCAGGATGGTGGTGTAAATAACCGTTTAGGGGAAATTTAGTCCTAATGAAAATGCAGTGATCCTTTCAAGCAACCTCCCCTGACATTTTCTTAATTGCCCTATGGTCTGTTCTgcct-ttatctgttttgttttcccatcCCAATGTTACACTGTCTGGTTGGGACAGATTCTGTTCCGCTATATCAACAGAGAGCAGCAGCTCCTATTTATTATGCCAGATACCATGCTTTCTGTATAGTATGTTAACCTGTTTGAGCCTAATATCCCTATCAAATATACAActattgtgtttttggtttttggtttttttcagatgaagaaacttgAGACTTGATTAATCAATTTGACCAAGGATAAATAAC-TGAGTGTCAGAGTTGGAATTCAGAAAGCTCTGTCTGATTCTAAAGT---TACTATtaacca--caaagaaaaattttgagaGTGATTAAATATTTATAG-CAAATAATGAAGAACTGGTTTTTAGGTCTA--AGTCCTAAAGTACCTATCTCTTGTTCTTGTTTCCTAAC-------------------TGCA-AGGTGCAAAACAGGTCCTCTC----TATCCTAAGTATTTCAGATAATAACT-GGAGAGtaaaattagaaatgtaaaaatatattgcatTAG---------CTTGCTgtgaataaaatttctttttttacaattaaaaaaaatttttaagtct

a score=3387
s chr3            95134952 50 + 160039680 CTGGAGACACCCTGGCTGGATTAGCACTCAAATACGGGGTAACGGTGAGT
s HiC_scaffold_1 189426777 50 - 233722169 CCGGGGACACGCTGGCCGGGCTGGCGCTCAAGTACGGGGTCACGGTGAGT

a score=141187
s chr3            95137552 5354 + 160039680 [encoded data, 5824 characters]
s HiC_scaffold_1 140249738 5326 - 233722169 [encoded data, 5824 characters]

a score=5465
s chr3            95137622 350 + 160039680 AGATGGAACAGATTAAGCGTACAAACCGCCTTTATACTAACGACTCCATCTTCCTGAAGAAAACGCTCTACATCCCCATCCTATCAGAGCCCAGAGAC----TTGTTTAATGGTTTGGATTCTGAGGA------GGAAAATGATGGAGAGGAAGAGGTGCGCCCGAGTAAGGATGAGATCGGATCATCTTCGGGGAGGAGGAAGAATCGAGGGTCAGGGTCGGGTCGGCCCAATGGCACAGG--------CCTCCCGCC--TCACCAGGAAACCTCCACCCCCAGCC--ATGACCTTTCTGCCTCTGATTTCCTTAAGAAGCTTGACTCACAGATCAGCCTGTCAAAGAAGGCTGCTGCCCAGAAGCTGAGG
s HiC_scaffold_1 189435971 314 - 233722169 AGATGGAGCAGATTAAAAGGGCCAATAAACTGTTCACCAGCGACTGCATATTCCTGAAGAAAACCTTGAACATCCCAGTTGTATCAGAG----AAGCCTTTGTTGTTCAATGGACTGAACTCGCCGGATTCTCCAGAAAACGAAGCTGAGGAC------------------------AGCAGTTTTCCTCCTGG-----AGAGCAACTGGGG--------------------ATGGCAGAGGATGAGTTCCCTCCTCCCAGTCCCCAGGAATCAGC--CCCTCGGCCGGAGGAGGTGTCGGCCAGGGACTTCCTGGACAGGCTAGACCTGCAGATCAAGCTGTCCACGCAG---GCAGCCCAGAGGCTGAAG

a score=56508
s chr3           95144290 1414 + 160039680 TGGGTGAGGGCTGCTGG-TGTCACGTTTGAGGAGAACTGCGAGTGTGTTTGGCATATCCCCGTCGGGATCCCAGCTACGATGAGTGCTGCCCGGGAGTCTCACCCACATGGGGTGATACGTTTAGCCTCCCCTGACGATGATCTTGGATCTAGCAATTGGGAGGCAGCAGACTTAGGCAATGAAGAAAGAAAACAAAAGTTCTTGAGACTTAT----GGGTGCAGGAAAGAAAGAACACACTGGTCGTCTTGTTATAGGAGATCACAAATCAACATCTCACTTCTGAACAGGGGAAGAAGACAAGAAAATTAATGAAGAGCTGGAGTCTCAGTACCAGCAGAGCATCGACAGCAAA----CTGACGGTATCGGCGGCACTGCGGACTCGGCTTCAGTGAGGTAGAAGATCATTATGGAGAAGATGATGTGGCTAGAGATGACGATGA------------------------------------------------AGACGACTCCCCTGATGCTGAGAGTCCAGATGACTCGGACAGTGACTCTGAGTCTGAGAAGGAGGAGTCTGCAGAAGAGCTTCAT---GCTGCTGAGCATCCTGACGACACAGAAGACCCGAAGAGCAAAAAAGATGCGAAGAGCAATTATAAGATGATGTTTGTCAAGTCCAGTGGCTCCTAACTACCAAACACCTAGTCTTTGTATTAAAAGTAAACCTTATTGTTATAATGCACAGTGGAGGACTGCTTATAGAGCACAGACCTCTGTATTATAATTTTTTTAAAAAGGCCCTTTTAAATAACTACAAAGAGTGTTTGCTTTCAAATGCCGTGGGTTACATTTCTCCAGGCATGACTATAACCATTTTTGTAAAGAGTCCGAGTTGTATAAAATGAGAAATAAATGCTGTACTCAGCTTCCCTTCATATTAGCATCATCTGCCCTCT--CCCCGCCGTTTGCCTCTGTAGGTGCATTATGGGGGACACTTGTTTGTTTGTGGCAGCTCCTTCATCTTCATCTTTTGGTTTGTTCCTACTTTGCTCTTACATAAT-TCATCTGATACTGTGACGTGTT------------TCCTTGGTTATACTTTGTTAAAGTAGACCTGTCCATCATGGAGTTGGCTGCCACCAGCCCTGCTGCAGACCATCACTGACAG----TCCATGCTT-GTTTAGTCT---------------TTGCTCGTGGACCAGAGCAAGCACAGGACACTTATGT--------------GTGGACGTGCC-CTGTCACATCATTCAAAGGTTGCAAACCCAAAATGTCTTTATATAAGTTGATTT-TACTGTATGGTAAAGTTTTTGATAAAATTTGGCCAGTTTTTACAGAAGAAATTATTTCTCTGCTCATTTAGTCCTGTGTATTTAGAAATATGTAAAACTGGATTTTTTAAAAGGTACTATGTGACCAAAGTTCATTTTTTCCTC-CTAAGGTCTAAATAAAGAGAAAGCAGTTTCCACCTCCCCCCAAAAAAAAGAGAGAA
s HiC_scaffold_1 65920279 1466 - 233722169 TGGGCTGGGGCTGGTGGCTGCCA---------------GCGAGCATGTTCGGCAT-TTGCTGCTGGGGTCACAGCAACCATGAGCACTGGCAGGGAATCTCACTGGTACTGAG-GAAGTCTTCAGCTTTCAGAGACAATGACCTCAGATCTAGCGATTGGAAGGAAGCAGACTTGGGCAGTCAAGAGAGAAAACTAAAGTTCTTCAGACGTTCCTCAGGgtgcaggaaaaaaggaacacacGAGTCATCTTGTTATAGGAGATCACAAATCAACATCACATTTCCGTCCAGGAGAAGAAGccaagaaaattaatgaaaaattggAGTCTCAGTATCAGCACTGTGT--ACAGTAAATAGTCAGGAAGCATCGATGGCGCTGTGAACTTGGCTTCAGTGAGGTAGA---CCATGATGGAGGAGGTGATGCGGCtacagatgatgatgatgatgatgatgatgatgatgatgatgatgatgaagacaaCAACCACGAGGATGACTCACCTGACCCTGAAAGTCCGAATGAGTCTGAAACTGATACAGGGTCAGAAAAGGAAGACTCTACCAACAAACTGCAATAAGCTACTGAGCACCCTGATTAAGTGGAAgatccccaaaacaaaaa-gatgcaAAAGGCAACCATAAAATGATACTTGTTAAACCCATGGGTTCATAACTCCCAAA----TGGTCCTT--ATTAAAAGTAAGCCTTTTTGTCATAATGCACAGTGCAGGAC----------GCACAGACCTTTGTATGCTAACTTTG--AAAACAGGCCTTTTAAATGACTACAAAG--TGTTTGATTTCAAATGCCATGGATTACCCTTTCAGGGGCATGATTATAACCTTTTTTGTAAAGAGCAAGAgttgtataaaac---aaataaatacagtgCTCACCTCCCATTCACGTCAGCATCATCGGCCCTCTAACCTCACCCCTCACCCCTGCATGTGCTTTTGAGGGGAATACTTTTTGTTTGTGGTagctgtttcatctttatttttc----ctttcatagttTTCTCTTACAAAAGGTCATGTGATGCTCTGAGATGCTCACGAAAAATATTCCTTAATTACACTTCATTAAAGTAGAACTACTTATCACGAATATTTCTGCTGCCCATCACAATCTAAACTACTGTTGGCAAAAGACTAATACTTAGTTTACTCTGACTGATTCAGCTCTTCTCTTTTGGACAAAAGTAACATGACAACAAGTATATTAACAGCCATTAGAATGTAATTACAGTTGTCACAACTTTGGAATGTTATGATCCCAGACAGTCTTTATATAATTTGAATTATACCAGATATtaga-tatttgataaaatttggCCAATTTTTACAGAAGGAAGTATTTCTCTGATCATTTAGTTCTATTGATTTAGAAATATGTAAAACTGGATTTTTCTTAAGATAATATGTGAacaaagttcatttttttctctttacggtctaaataaaaagaaagaagttt---------cccataagaaagaaagaa

a score=185067
s chr3            95159026 6491 + 160039680 [encoded data, 7224 characters]
s HiC_scaffold_1 140264141 6642 - 233722169 [encoded data, 7224 characters]

a score=275577
s chr3            95166923 7704 + 160039680 [encoded data, 8548 characters]
s HiC_scaffold_1 140271084 8052 - 233722169 [encoded data, 8548 characters]

a score=29909
s chr3            95181517 4283 + 160039680 [encoded data, 4739 characters]
s HiC_scaffold_1 140286844 4151 - 233722169 [encoded data, 4739 characters]

a score=37586
s chr3            95188173 1205 + 160039680 acttcttttcagtaggttaacTAGGGAGAACTTGTGTGCCTGCTC-TTTACAACT-GTATGCTATCCTTTACTTTTCCTCAAGAG-------GAGGCTTCCTACAACTGCATCAATCTCATAAATCTAAGGCATATTTTCAGGCCACTTGAAAAATTTCAGGTGTAACTATTAAAGGCTCTTGGTGTATATGTATTACAAGTACTATCTTAAAA-TCTTTCGATATAAAGCTAACTATTAAAAAAGAAATTCAACCTACAATGCC--CAGTA------CTCTGTTTAAAGCAACGATATGAGCTGAGAGATTTGGTCCTGG-TCCTTTGGTCCCTCAGA-------TGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCCTAGGCTCAGGCCTTGAGCCCGGCTATTGTT--------------------------------------------------------------------------------ACCCTC-----------------TTAAGGACATTCT-AATTTGTATGCAGTACCTGCAGTCTATACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCTTACAAA--GAATATGATGAGTG-AGCACAAGTTGTAGCCGTTG-GTGTTAGGATGAAATAGTTTCTATGGAAACGTTAGTGTGAGGCTCCGTGGTCCTTCCTGACTTCATGACTTGTGTTGCTCTTTCTACCTCGTCCCCTTCTGTCACCACTACAGCATCCACTTCAGCTACTTCCTCAACTACGGTGACATCAACTTCAACTCCGTTGGTCTGCTGCTGAGCCATAGCCTCCAGCCTGAGCCGATACTGCTCGGCCTCCTGCTCTTTCTTGAGGAGCTGGTGTCTGTACTCCTGGGCTCTTCGGTTGGCCTCCTGGAGCTGTTGCTGCAGTAGCTCTCTTTCACTGCCTTCCTGTAAAGCAATCAGCGGCAACAC--AGTAAGAATC-CCGAGTATGAACTTCCCAGATGA-------------AGACGGAAAAATGAAGAGGGCGTCAGCCCTAACCACCATGGTGTCCATGCCCTCCTCCTCCTCTGCTCACCATGGTGTCCATGCCTTCCTCCTCCTCTGCTCACTGGTAAGCAT-TCATTACCTTCATTTCCTCAACCCTGTTTGTCATCTCTGCCATCCTTGGTCTCTTCACCAATGGCAATTTCTCTTCTTCCTCTTCTTCATCTTCAATTATTGTCTCCTCTGCAACCTGACCAGCAGGCACAGTTAGAACTACAAGCCAAAGCACATCAATGGGAGAAAATGAGCACACAATATACAAAGGAGGC---TTGTTTGATTTTAAGTAGAG-AAAAGTGAATTTAATATT
s HiC_scaffold_1 140292207 1511 - 233722169 atttcttttcaggAAATTAACTCAGGATAGTTAAGAGTCCTGCTCATTTAGAAGTAGAATACAGTAGTT--CTTTTCCCCAAAGTCTGCTTCTAAGCTCCCTCCaa----attaatttcataaatttaagGCAAATTTTTAGGTCACTTGAT--------GATATAATTATTACAGACTTTTGGTGTGTATGTATTAGGAATGTTATCTCAAAAAGCTTTTAAtagaaagttat---ttaaaaaataa--ttaacccACAATATTAGCAGTCGTATCTCTATGTTTAAAGCAGTGATGTGAACTGAGAaatttggtctttccttttttggttccTTAGAGAAAGTATTCCTTATATATGACCTCAAATTTTCCAGTTGCATACAGAGCCTCCCTGGGCCCACGCACTGTTTCCTGCTATAGTTGTTGTTTGGtggctttctttccttccagtgCTGAGGGTCATTCCTGGACCTTGTACATGACAGGCAAGTGTTTACCACTGACCTTCACCTCCAGCTTCTTTAGTTAAGGACACTCTCAGGTTTTATATAGCATTTgcattctgtattattttttcctccttttgtggCAATAAGGTTTGAACCTAGTGCCTTGCATATGCTAGCCAAGCAGTCTACAACTAGCTACACCcaagcccttttaaaaattttttgagacagggtctcactaagttgtccatgctggccttgaacttccaatcctcctgactcagcctcaagtagctgagattacacacatgtgccaccattcctggatgcattttcttcttaaaagagGAGTAAGATGAACACAGTGCAAGCTGTGGATCTTGCATATTAAGATGGAACAGTTTCCATAGAAACTCCTGCATGAGGCTCTGTGGTACCTCCCGAACTAAtcacttctgtctctcttccttcctcctccctttctgtGATGACTACAGCATCTACTTCGGCTATCTCTTCAACCACGGTGAAGTCAACT------CCGTTGGACTGCTGCTGGGCCATGGCCTCCAGCCGGCGGCGGtactgctctgcttcctgctcttTCTGGCGGAGCTGGTGCCAGTACTCCTGGGCTCTCCGATTGGCCTCCTGGAGTTGCTGTTGTAGTAACTCTCGTTCGCTGCCTTCCTGTAAGGAAGCCA-CGTCATCACTGGGTAAGAGTTGCTGATCTCAAATTACCCAGAAGATaaacaggcaaacaaacaaacaaacaaaaagaaga--agccCTGGTGACTATGG----------------------------CTTTTGAGTGCTTGCCTTTTTCATCCCTCCATCCACGCTAAAAATAACATTACCTTACTTTCCTCCACGCTATTTGTTATCTCTCCCATCCTTGGTTTCTTTGTCACTAGTAAtttctctgcttcttcttcttcctcctcaatTACAGTCTCCTCTGCAACCTGACCAGCAGGTACAGTTAGAACTACAAGCCAAAAGACACTAATTAGAGGTAATAAATACACAGTAAAACAAAGAggctttttgcttgcttttaacTAGAATACAAGTGAAATATATACT

a score=18365
s chr3            95190339 407 + 160039680 CTTCTCTGTGCTGATCCCACAGGCATGCAC----ACACGTGGCTCCTAGGGAAGCTAACGTAGTCTGGGAGCCTGCTGACTGCCCCTTCTCAGAGCTCCTCTGTTC--TCTCCTCTCCGGGCTTTCCCCCACTCCTGCAATCGGTCTTAATGCCTCATTTCAGGGAACTATGGTAGATCTAAAATCTCTCTAAGCAATTGTCTACCGGGTATAACTCACCTTGCTGTCCATCTTGCATAGTTACAATAAATGGCTGGCCAATGCCTCCAGCAGGGAGTGATGTTTGGATGTTACCCAGAGGGACTCCATCAGTCACGATGGTGATGACCCTCTGGCCTCCACTCCCCACCACTTGCTGGGTCGAGGAGTCAAGAGAATTTCCTTCTTCCATTTCTTCTAAATGAGCTAAGAAT
s HiC_scaffold_1 140295835 373 - 233722169 cttctgagtgctgggattacaggcatgtactaccatacccggcccct---------------------------------ttttctttttcagagtttatTTGTCCCATCTTGTATCTGGGATTTCCCC-AGTCCCACTCTTTGTTTTAATGCCTCATTTTCAGAGGGTGGGGGCTGTCTAAAAT------AAGCAACTGTCTGCCAGAAGTAACTCACCTTGCTGTCCATCTTGCATAGTTACGATAAACGGCTGGCCAAGGCCTCCGGCAGGGATGGCAGTTTGGATGTTACCCAGAGGGACTGCATCAGTCACTATGGTGATGACTCTCTGGCCTCCATTCCCCACCACTTGCTGAATTGATGAGTCAACAGAATTTCCCTCTATGATTTCCTCTGAATTGGCTAGAGAT

a score=29179
s chr3            95200123 1007 + 160039680 CATTATCAGAACCCTACCTGAGGTTGCTTTGGTGTTGGCTGAAGAGACAAAGCTAGCGAGGTTAATGACCTCTCCAGAGGTGAAGATGAACGGAGCAGTCACAGTCACAGGGTTAGCCACTGGGTTGGCTCTCTCGTGGTTAGTGTTCACCTGATTCTGCATTGCTTCCTGCCAAACAAAGCAGGTTATTTCAAAGTCAGTACACTT---AGCTTTAGTCACACAGTCACTGAA-----CAACACAGCCCCGCCC----CTCCCAA----GCTCCATCAAGCAGAACTAGTCTGGCATGCAATGT-CCAGGGAGCGAAGGGTTCTCATTAGCACTACAGCTTTTC----------------TCAAACTGAAGCAACCG-TGTTAGCTGGCTTCCCCGAGCTTGTTTCTACTTGAG-AAAGCAGAGGTGTGTTA--TTCACATGCCTTCTATATGCCTCACTTAACCGCTCTGCA---------TTTTAACTTGAAAAAAAAAGGAAGGGAAGGAACTGGTCTGCAGAGTTTAA-AAGTAATTTGCAGCACTAATATTCTGTGATCAATTATCTACAAGACAAGATGCTAGCAGGAGATCCCTGCAGAGCA---------AAAAATACTCTCTAGA-GCTTTGTCCT-------ACAACATGTTCCATTCTGCCACTGAAGAAATCCCTGAGAGAACGTGTAACAAGCAGACAAACGAGGAGCAGATTCTCAAGTCTAGTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATGCTGCACTCTGGCTTCCAAGGATGTCTGCTCAA-TTTGGTGAAAAGATGCTTA----TCTTTTATTTTTACTTTCAGAAGTTTTCTACAAACATGATAACTA-TCAAAAAAGTCCAGTTATG----------------------------------------------------AAAGGGC------TTTGA----------------------------------------------------------------ACAATAACTGAAAGTTGAGGAGAAGAACCAGTCTTTGGAAAACCAGCTGTCATGAAAAACAAACAAAACCCGAAAATGCACAAG---CAGCTATTTTTCATATGTAATTATCCCCTTGACTAAGAACTTCAATTGAAACAGATTATTCA---TTTTCCGGATACTGTTAAATTCTTTCTTCAGTCT-------GCTATTTCTAACCTCCA
s HiC_scaffold_1 140302318 1410 - 233722169 CATTATTGGAACATTACCTGAGGTTGTTTTGGCGTTGGCTGAAGACACGAGGCTAGCAAAGTTAACCACCTCTCCTGAAGCAAAGATGAATGGAGCAGCCACAGTCACGGGGCTGGTCACAGGGTTGGCTCTCTCAGGGTTAGCGGTGCCCTGACTCTGCATTGCTTCCTG-CAAGTGAGGTCAGATATGTCAAAGACAGCATATTCACAAGGCTCAGTAGTGCAGACGGGGAAGTACCAGACACCCCTCAGCCTTCTGCTCCCAGCAATGCTCTACAGAGCAGAC----TTCTGCACACATTGTCCCAGGGAGCTCCAAGTTCTCATTAAGACTAGAGTTtttctattgtttgtttgttttcaacaCAAAGCAACAGATGTTAGgttgctttcccacatttgtttctagttaagaaaaacaaaggtaTGTTATTTTCAAAAACTTTCCAGACAGCTGGATTCATCTTTCTAAATCTTGTCTTTTTTGACTTGAAAAATGAGGGAAG---------TGGTCTGAATAGTCTAACAAGTAATTTACGACATTCATATTCTAAGATCAATTAGCCACAAGTCAATATGCTAGCTGGGACTCCCTGCAGAGAACCTATAGAGAAAAACATTCTCTAGAGGGTCTGTCCTGGCTGTAACCACTTGTTCCATTCTGTCACT-AGGAAATTCCTAGGAGAAT-----ACAAGCAAATAAACCAGCACCAGCTTTTAAAGTTTACTTTctgctatgcttttttttttttgtctttttttttttttttttttgtctttttcctgatactggggatcgaactcacaactgcctgctttacaaggcaggcgcttacgccactgagctaaagccccagctcctgtctttttcatttttattggtaccagggatcaaactcatgaccaccctgcttgcaaggcaggtgcttatgccgctgagctaaatccccagccctaatatgCTATacttttgcttccaggaatatcTGCTCAATTTTGATGAAAAgatgcttcattttattttatttttactttcagaaGATTTCTACAAATAtaattactactttaaaaaatccAGTTATGGTCAGGCATGCTGGCAAATGCCTataccagcacttgagaggctgagtcaggaaaagTGCTAGGAGTTTGAGACAAGCATGGCCTAACATAggaggaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaagcacaagaacTGAAACTTGAAAAACGTAAACTGTCTATGG-AAACCATctgtcaagaaaaaca---aaaaaccgaaAGTGCAGGAGAAACAGCTA-TTTTCACATATACATACCCTGCTGACTAAGAACTTCAACTGAAAT--ATTATCCATTGTTCTCtggatctcactaaatttctTCTTCAACCTTTCACTCACTTTTTCTACTTTCCA

a score=37988
s chr3            95203457 1518 + 160039680 gccaggcatggtagtacctatctgtaattccagcatatg------tgaggcaggaagattacgagtcatctttaattacattcaaaatctgagattgccctgggctac---tttagatactgtctcaa------ctgaaaaaaaaaTAATGAAAGAGAGGT--ACCAATATAGAATGACA---TGATCA--------------------AGACATGCTGTAATTTGATAA----------------AATGGGAGGAAATTCTAATTTACTTCAGCTCCC-TCAAAATAATCTCTAAATT-------AGTGTACTTTGG--GGGATATAAAGAAACACACCTGAAGCATGACCAAAATCTCAGTATTGTTTTTCTCCATTGCTATGTCAAAGGCAGACTTATCAAATTTGCTAAAAGCGTAGACATCAGCTCCATATTTGATAAGTAACTCGACGACATCCCGGTGATGGTGCTCTGTGGCCCAGTGCAGAGCTGTCATCTGCAGCATGTCCTTTGCGTTCACATCTGCACCACTCTGTTGGGAGAAA--------------AGCAACCGTTCAATCCGTGTAAGATCCCGTTACCAAAC------AGATTCACACAGAGA-------CATTTAATGCTAGTTCTCACTTAAGGACTCTCAGAGGGAGAGTCACTCCTCACGGCCTCCTGAATGCTG--AGACATTATGCTTTCAGTGAGTGGGTCTGCTAAGGACATCACTGGGAAATTCTCACAGATGGCTGAGGAAGGGAAAGGAACAGA------TTTTGTTGCATTTATTAACAGAAAGCTGAGT-------------------------AGGGCCTG--------------------------------------------------------------AAAAAAAAAAT--------------------------AGGCATAAGTACAGAGAACACCTACAGAAAAGGAACGAAGAAAAATCAATAAAATCTGTTTAGCCTTTAAAAAACAAATCAGAAAACAAAATAATCTCCATGATGACTCCTGAAACACAGTTTCCatgagtaaaataataagtaaatgaatgaatagatagatagatTTGCAACTCAGTGACCACCTACACTAAGTATTTCCAGACCACTTTCCTACCACTATTTAAGAAAAAATGTCTTACAGCATAATCCGACCACTATTTTTTTGTTTGTTTGttttgtttttcaaggcagggtttttctgtgtatccttggcta---tcctggaactcgcttgtagaccaggctggctt-----agaattcacagaaatccgcctgcct-ctgcctcctaag-----tgctgggattaaaggtgtgtgccaccactgccaggctCCCGC-CAG--------TATTCTTGCTTTACCCTAACAAGCAGTTCCACGATGTGAACATGTCCATCAGCTGCAGCCATATGCAAAGGGGTCCTGTCCACTTTGGTCCGGGCATCCCTGCTAACGCCAGCTCGAAGGAGCACTTCTGCTGTGGAATAATGACCATACTGGGCTGCAAGGTGAAGCGGTGATGTTCCGAGCTGTTGGAAGATAACACTCATTAAGT-TCAACCATGTGAAGAACTGTATCATTTCTGGG------TAGAGATATATGAACAAGAAAT----GAATCCTATAGTATTCATTC-TGGAGAAAGACTCTTCCTGGGCAGATAGACTGAAAAATGATAGC--ATTTTAAAGTTAATGTACTGAGG
s HiC_scaffold_1 140306052 1589 - 233722169 gccAGATAtaatggtgcacatctgtaatcccagcacttgggaggttgaggcaggaaaatca----------------acac---aaatttgaggccagcctgagctacacagtgagagcttgtctcaaaaagaccaaaaaaaaaaaaaaaaaaaaaaaaattgctcaggctggactcaaacttttatcatcctcctgcttcagcctttcagaC-TACTGGGATTGCAGAAGTGACCTACCAGGCCCAGCTGAggaaaattctgttttaattcaATTCCCATaagaaaaaattctcaatttCAACTGAAGTTACTCTGCCCATTATAAAAAGAACTATACCTGGAGAATGACCAAAATCTCGGCGTTGTTTTTCTCCAGGGCTATGTCAAAAGCTGACTTATCAAACTTGCTGAAAGCATGGACATCAGCTCCATACTTGATAAGCAACTCTACTACATCCCGATGATGGTGCTCTGTGGCCCAGTGCAAGGCTGTCATCTTCAACATGTCCTTGGCATTCACATCTGCACCATTCTGTCAGAGAAAAATTTTTTAGACAGCAGCGACAGTAGCACAGATGCAAGATCCCATCACCAAACTATATAGAATTTCCACTGCAATTCTACTTGTTTAAATTTAGATCACGTTTCAGAAACATCAAAACGAAAAACATTCTGAA--ATTTCCTGAATGCTGACAGACGTT----TTTCAAAGAGTGGGTCTTCAAAGGATATCTCTGGGAAATTCTAACagataggagaggagaggaaggggaaagaatagatttttgttatatttattaacagagagctaggggctggggatttagctcagcggcataagcgcctgccttgcaagcaggcagtcctgagttcgatccccggtactgataaaaacgaaaaagacaaaaaaaaaaaaaaatgtacagagaGCTGAGTGCCTAAAAACAGGCATACGAACAGAGAACACCtgcagaaaaagaatgaagaaaa---agtaaaatctgtTTAGCACTTTAAAAAC---------TACCAAACAGTCTCC---------------ACATAG-----------------------------------------------------------------CCatgctgattctttt----ttttttttctcttggtaccagagatcaaactcacaaccgcatactc----------------------------------gccaggcaggtgcttacactg----ctgagctaaatccctgaggCCAG--------CCATGCTGACTCTTGAAAACAGCTGCAACACTCCACATCTATACTGTTTCCTAGAACACCATCTAAGACAACAGGGAGCTGGaagcatccccccccccccgcacagCCCCACCCCATTCCTGCTTTACCCTAACAAGCAGCTCAACGATGTGTGCGTGTCCATCAGCCGCAGCCATGTGCAGAGGGGTCCTGTCCACTTTAGTACGAGCATCCCTGCTGACGCCTGCGCGAAGCAGTACTTCTGCAGTGGAGTAGTGACCATATTGGGCTGcaaggtgcagtggagatgtTCCAAGCTGCAGGAAGACAACCCTCAGTGAACACCTGCTGTGTGTAAAGC---------CCTGGGCGATGCTGGAGAAACGTCAACAAGAAGTGACCGACTCCTATGGCTTCTGTCCTTGGAGAGAGACTAATT---GGTAGATGTAACTGAAAATGATTTCCTGTTTAAAAATTAGTATACTAGAG

a score=13013
s chr3            95206416 230 + 160039680 AAGGCATGCTTGCTCGGGAAAGCACAGGGCCTTTG-GTT------GAGCTTACCCAGTCTGTGGTGAATGGAGCCCCATTTGCCATCAGTGTCCTCACTTCATCGTCTTGGCCTTTCCTTGCAGCTTCTAGCAGCCTCTTCCCCAAGTCCACCAGAGACATCTTAATGCATAGAAACAGCAGTTCCCAGGTAGCTGCAATCCAAACACAGGGGGAACAGTCATCTGCAACATTCTCT
s HiC_scaffold_1 140312512 234 - 233722169 AAAGACTGTGCACTTGACAAAGAACTGAGGCTTTGTGCTTTCTGGGAACTTACCCAGTCTGTGGTGAATGGGGCACCGTTTGCCATCAGGGTCCTCACTTCGTCATCTTGGCCTTTCCTTGCTGCTTCTAGCAGCCTCTTCCCCAAGTCCACTAGAGACATCTTCATGCATAGGAACAGAGGTTTGCAGGTGGCTGCAAGGCAAACGTAAGG---ACAGTAGCCTGTAGTATGTTTT

a score=30318
s chr3            95217071 1068 + 160039680 GGAGGCCAGCTGTACAAGCATCTGTGTTGAGAACTGGATATAAGTCCATGACTGCTCTTGTTCACATTAT-----GAACTTACTAAAGTTTCACGTTATTACTGGACCTTGAAAAGTCCAGTTCCCACTTCCTCCCTAGTCACATATCCCTCAGTTTTTGACATCAGCACTCTGCCAAACTCAGG-GGCGCCAACTTGCAAGTGGGAGCCCCAGTCTGTAGTGGCAGCCCGGACTCCTGCGCCACACCGCCCCCTCGTGGTCACCCCATGTGGCCTTGGCTTCCCGGAGTCCAGCTCCCCAGCCCCAGGTCTTCCAcccaccccc---ttcacctcc--cagtcccctccccttcctcccgacagcatccccttcctcttggtccctctcccccccgccgccac-------ccccgctccGGCAGTGTGCAGGCCGGCGCCCACAGGTCCTGGCCGGGCTGG--GCCGGCC--ACTTATCACTGCCCCTTGCATCGCAGTTCGGAAGCTCCGGAACCCTGCGTGTCCTTTCCCCCTCACCT----ATTCCGGAGCGCTGCCGGCTTCGCTCTCACTGGGCCCGCCAGTTTGGTCCCGTTTCTTTCTCTAGTTAAGA-CTCCTTGCCAGCGGCC-TCACTTTT-CGGCCTTTTCACATATGCATATTTGGGGGGGCCCTTACCCCCCCTCACGGAGAAATGGAGGCAATAAAATGGCGGACCCGGAAGTGAAGGCGCTGTGACTATACGTCCTGGCGGAGGAATCT---GAAGGAAATGGGTTAGCGGAGCCACTTTGCCCTTCTCTCAGGACCTCAACGCACCTCTG-AGTCCGACTCCTTCC-TACTGAGGACCTCGTGAGCTGGAAAAACGTATACCGCGGGCATCCTGAGCGGGACTACTTAGCGAGGCGCAGGATCACCGATTACGTGGCTTACGTGAGGGATAGTTCCGGCAGGGGACGGACGCAGATGGTAGTTTTGGCGCC---AACCAGTGCAGCGCTCGGAGGAACTGGTTACTGGTGCGTGTTGGCGTCCGCACTCTACCTTCCTGCTGGTTCAACGCCGGGCTAACTTGAGGGTTG--GGGGAGAATCTTGCTTCC
s HiC_scaffold_1 140328394 1042 - 233722169 GGCGGCCAGCTGTGCAAACA---GTGCAGAGACCCGCGGTGCCGTCCTCG-CCGCTCCTGTT-ACATCGGTTACGGAGCTCACTAAATCTTTAGTTTACCACTGGAGTCAGAGAATTCGACAGCCCATTTTCTCCC--ACCACGGAATTC-CAGTTCTCCGTATCCCCGCTCGGC-------AGGCAGCCCCGTCCCGCCACCGGCAGCCCCGGGCCGT-----------------CCGCGG-ACGCCGCCCCCTGGCGGTCACCTCA-GTGGTCCGGGCGTCGCGTGGTCCGGCTCCCCAGTCCCAGGTCT--AACCCACCCCCATCTTCACCTCCTCCagtccc-tccccttcctctcgaCGGCATCCCCTTCCTCTGCGTCCCCCTCCCCGCCGCTTCGATGAGGGGGCGCCGCTC------------GGCGAGCACCCAGAAGTCCGGGCAGGGCTGGTAAGCGGCATGACTTCTCATGGCACCGTACACTCCACCCTGATGCCCCCGAGTCCGCGCAT-TTCTTCTCCCCTCACCTCCTCGTCCCGGA-CGCTGCCGGCCGCGCTTTCACCGAGCCCGCCAGTTTGGTCTCGTTTTCTCCTCTAATTAAAAACTCCCTGTCAATGACGGTTACTTTTATGGCCTTTTCATGTATGCATATTTTGGGGGCCTTTACCCCCCCCTCGTGGAGAAATGGAGGCAACAAAATGGCGGACCCGGAAGTGAAG--GTCGCGAGTACGTGTTTCGGCGGAGGAATCTGTGGAGGAAAATTGATGAGAAAGCTCACAATTGCATTCGGATGTGAAAGTGATGCGATTCTGAAGTTCATCTCTTTAAGTATCGAAGGGCTCTTGATTCGGACAAGTGTGTATCGGCGACATCTCAGGAGGGACTATTTAGTGAGGCGGAGGACTATTGATTACGTGTTTTACG-ATTGTATAGTTCCGGTAAGGGATGGACCTTGAAGGTGGTTTTGGCTGCAAGAACCCAGAAACCGCT------AACGAGTCAAGGGT---TGTAGGAGTTTTGATTCTACTTCGCAACT--TCTCAGGGGGACCTAGCGTTATGGTTGATGGGAAAAACCTTGCGTCC

a score=45112
s chr3            95219109 1440 + 160039680 GAATGGAAAAAACTAAGCCCCAGACTTAGGATTTAACGTCTTTATTCCATAAATGAATAAACAGCTCCGCAATTCATCTGCAATAGCTTTGGAAGGAATGGGGAC---GGGTAGGGTCTGAACATAACTGCTTACTTCACGGTCTTATGGCGGCCAAAGAACTGTGTC-AGGAATCACTGATTCCTATCACATACTGCAACTACAGAAAGGCAAAGCTAAAATACTTAGGACCAAAACATCTGCCTGTTCCATGACAAAATCACAATTTTATATAAATTCCCCTAATAatactctggtgtttctttagatcagatacatcttttgtcttttaggaattatcctcatagtgaagtttccctgtgaagactcaaatctgatttt-ctgagca---ttTCTACCCACAGCTGGAAGCAGAGCTGGA---------TATTAAAGG----------------------AGCTACCTCTGAAACGGTGCGATGTTTTTCCTCATCC---------CACTCCTTTGTTTCCCACCTTTAACTGCCTGCGTGTTTCTG---GGGAAGAGAATGCATTGTAAGCAGCAGCAGCATTT-----CTTATCTTAGCCTTTTAGAAATCCTGTTTTGTAGAAAGT-GTCTCAAA-----ACTT-CCAGGTTCTCATTACTTCTTGAAGCAGTATTT--GCTTACTGGCCTGGTA-GAGGACATTAGGGAGGCTCAAGTAATCTTTGAAGTTGATTAAAATGTAACAAACAAACAAAATAATTGGTCTCCCATTTTGCACAACTGTACCTCTCTGTGGTGCCTCAAATAAGGGTGATTCTTTTCTGGGATTAGTTAATATTCTCCGGGCTGACGGGAGGAAATCCTATGA-----------TCTAGTACTCCATTGATTAAACCCTTGACTTTGTGCCTAGAGGGCTTTT-GAGAGAAACGGAGTAGGCAGataaataaataaataaataaatatagatagataaataagtaCGTACATACATACAAACCTACAATTCAATTGGCAGATTCATCAGCACCACCAGCACAATAGAGGGAAGAGAACAAGATTAAAGTGGAAGGCTTAGAGAGGAAGGGACTTAAGAGGGAAGATAATGAAGGTACGGGGTGGGAGAGAGATCTTGGCCTTAAAGCAAGTCCAGGTCGACAGAGTGGATGCTGGCAATAGGCGCTCTCCAGAAGTTGAAGGTGCTGTACTCAAGGAGGGGGTCACCTTCAGGGTT---CTTCTGCTCCGTCCCAGATGCCTGCCCGTTCATTTTGCCAACGCTGCTGCTATCCTTGCTCTCGTAGGTAGGTGTATCTGACAGGCCCAGGCCTTCCAGCTCCGACAGATCCAGTTCTGGGATGGGCATCCTCCAGAAAAGAAAGGAGCTGTACTGGCTACTTACAGGGTCCCTCATGATCCCCTGAGGAAGAGCAAATCACGTGTTAGTCTCCACGATAGAGCAAGCTCCTTGCCCCGTGCTTTCCCTTGCTTAAGTTGTTCTTTTCT
s HiC_scaffold_1 140330762 1391 - 233722169 gagagaaaaaaaatagaatccagtCCTGGGACTGAGTGTCTTTattaaacaaacaagtaaatagcAGCACAAATCA---GTAATGATGTTG-AAGAAGTGGGGAAAAGGTGTAGGGTCAAAcggtagttgttcatttcatggTC--AAAGTAGTT---GAACTGGGCCTCAGATTCACAGATTgttattatatattgcaaatgtAGGTGGGCAAGACTAAAATACAAAGAGCTAAATACTATTCCCTTTAGAAGACAAACTT---------TACAAATTATCTTAGCAGT--------------------CAGCAAGATATCTT--------------------------AAGATT------------TCAAATCTGATTTTTCTCAGCAAGTTTTCAACCCA--GTTAGGAGCAAAGTTGTAAAGTGAATAGACTAAAAGTATgctctttttgaaaaatcttagcTCTTTCTGAGATGACTTAACACTTTTCATTTTCCATGACATATTGTTTCCTCTTGTTTTACCTTTAAGTAAC--CCAGTTTCTGTATGGAAAAAGAATATATTACAAGAAGAAGCAGGATTCAAAAGCAAATCTTATCCTTTTAGAAATCTTGTTTTGTAGCAAGTCATCTCAAATTAAAACTTGCAAGATTTTTGTCAAccctttaagaaatatttatgtttattgacCTGGAGCAAAAAAAGTAGGAAGGTTTGAGCAATCTTTGAAGCTgattaaaatggaattt-----taaaaaaatcagctttCTATTTTGCACTA-TCTACTATTCCTTGGTGCCCCCA-TAAGGAC------TTTCTGA----AGCtgatggtgggggggggggcaggggagAATGCTGTGGAGTCCCTGTTTCCCAATACTCCATTGCTTGAGCCTCT-ACTTTGTAGCTGGAGGGCTTTTTGAGAGGAATGGAGTAG-------ATTAGATAGAGAGatgaata--gatagataaataaatacataaataca------------attCAGCAGGCAGATTCATCAGCACCACCAACACAAcagggggaagagaacaagattAAAAtggtaagggatggaaggagggaGGTGGGAAGGGCAGACACTGAGGGCAAGGTG-GTGAGAGAAGTCTTGGTCTTAGAGCAAGTCCAGTTCAAAGGAGTGGATGCTGGCAATGGGAGTTCTCCAGAAGTTGAAGGTGCTGTACTCAAGGAGGGTGTCCCCTTCAGGGTTTTTCTCCTGCTGTGCTGCTTTTGCTTGCCCAGTCATTTTGCCAGTGCTGCTG---TCTTTGATCTTGTGGGTGGATGTATCGGACAGACCCAGGCCTTGCAGCTCAGAAAGATCCAGTTCCGGAATGGGCATCCTCCAGAAAAGAAAGGAGCTGTACTGGCTGCTCACGGGGTCCCTCATtgtttcctagaaaaaaaaaaaacatttatcagTCTTCATGTGAAAGCAACGTCTCTGTCtcctggtctttctt-------tttttttcttct

a score=128777
s chr3            95226631 6450 + 160039680 [encoded data, 7548 characters]
s HiC_scaffold_1 140336006 7067 - 233722169 [encoded data, 7548 characters]

a score=56966
s chr3            95233463 3047 + 160039680 TGTGTGACATGTGCTTTTCCACAGACAGGTGCAGTTCAGGAGCAGATGAGATCCAAGGGAAACCACCGTGACAGACCGTGGAGCAATTCTAGGGCCTTGTAGCTCCCATGGGACTGGTAAGTGACGAGAGAAACCCGTTTGATGCCGTGTGCCTGTGCCAGCATAGTCTGATGCCCTGCCTCAGTCCTTAGAGGCAAGAGTGAGGGTGAAA--TGGTGGACCGACAGAATTAAAA--TGAAGAATCGGGAACACAAGATCAAAACCTGTAGGGTTTTTTCCAAGAAGGCAGGGGAGGggatacggtggcacccagctggaacctctgcacactgcagggagagggaggagctgtcggaggtcagcttctcctcaccaacacagtgaatgccgggccagc--------atgggcttcatgcgatcctgtctcaaaaaacaaTGATTTTGAGAAGAGCGTCCTTTGGAAAGTTTAAAATATGCACTGTAGgccaggcatggtggcacatggctttaatcc-agccccggggaggcagaggcaggagg-----atcttt-------gcatgtttaaggttggcagtacatagtgagagccCCCTTCCTTGTGACTCCCCCACAGAAATGCACATTGTATAGCGCCTTCTCCCTCAGGCT---TGGGAGTTT-----------------------------------CTTCTTTTCCAGT----GGGATT-----------------TTTGATGGGCAGGT---TTTGAATTTGAGTTACTTCAGCAGTTACTTGGAGGAGGAGAATTGCTACGGGTTTGGGAGCAGCCTAGGGTACAGTGTGAGACCAAAACTTGATTTTTTTTTTTTTAATTCAGGTTCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAA---TGCCACCACCAGATCCCTTCAA-------CCAGTGACCCAAGGGCCCCCC--------------CTCTTTCTCTCTAACAAGTGCCTCAAAAGGAGTGGGGGCTGGTCTCCCTTTTCTCCCTCTGGCCTCTGCCCCTCCTGGAGATGGGGGTCAAGGCAGCAGGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCTGCACACCCTTGATCTGAGCTGGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTC-GGGTGCTACCTGTTTAAACTTCTTG--CTTTTATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCCCGAGTTTGCTAAATTCTTCCTGCTTCCCTGTACTCTTTCCTT--CTGGAATGAAC---AACACAG-------AGGTGATGGGGCTAGGTGACCACTGCCCAGTCCGCTCGG------AATTTCAGACCTTAAGGTCACAGCCCC--------GCCATGTCTCTCCGCTGGCACCAGGGTCTTGCTC---------CAGTTAGGCCTCTAATCC---------------------------------------------------------------------CATGCTTCTGTAGTATTAATAGCTTCCCAG-aatttttttttaattaaaattttaatttGAGTTCTTTTAATTACCCCCATCTTGC---TATCTCTGTCTTT-TCCCTGACCCTTTAAGAAACTTTAGGTTTCCCATTGAGTAAGAGTTAAGGGATGGATCTTAACTTGACCACATTCCATTTAAGACTTGGAGT-CCTGGCCTGCCCTCTGTCAGCCCCCCTGCTGGCCCAGGTGAAAGGAAGAGGAGGGTTCCAGATAAAAAGCCAGGATGTAGCAAAATTAGCTGT-ATCTCAGGGTCAACTTCCTGTGAGGGTGGTGAGGTAAATAGGTTGAAAGCG-----------------CTCTTTGGAGTACAGGCCCTCGGTCCTTTATGGAAGCGT-----ggcttttcaactccaacacttgaaaatagcttggacagtttgggctgcacagtgctttgtaatggggagggctgttctgca---cagact---acagcatctcttccccacccccgaccccctgcccagtgtggcaacc-aaaatatctccagaaattgccaaatgtctcccagggatgaagttaccca-------------cagcttgagagtcaAGGTATGTTTTCCTTAAGTGACTTCCACATGGCC-CCCCACCCCCAGTCGGGTGATTCACCTTGAGCCATGGGTAAGCTAGCGCCCTCAT-------AGCTCAGCAGAGCTGCACATC-CCTGTTTCAGATGTGTTGCTTGCACTCCCGTCTCTGTTCTTGATCTCTGCAAGAGGGCC---------------TTTCACAGTGCCAAGACGGGAACGGGGTGTGCTGGGATGGGAGGA--------------CAGGACAGTTACGCTGGCTGTCCGTCCGTACGCT-----ATGCGCCTCTCTGCTCTAGTCTTTGAACCCGGT-----TAAGACTCAGGGACTTT----GGAAGATCAGGTGTCAC------------GGAGTG-GCTTTAAACGGGAAAGTACTGTAGAAACGGAGTCTGTAGGCCTTTTGTTTTCTCAGGTG-TTGTCATTCTGGCCCTTTCTTTGCAGGCTGATTAGAAAGGCAGAACAAGACAAATGAGCTCCTGCCTGTTCCTAGAAGAGAGGGCTGGGGTCTCATTAGCTCTGTAATAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCTGGCGACTC----CAGCCATCCCGTTATCCCTTGCCT--AGTGACTGAGACTTTCATTTGTCCAAAGCTCTGCGCTCCGTATGGCATTTCAGGCTCTAAGACTGGTCATGGATGTTCATTTGGAGTTTGCCTCCTTGTGGTTCAGGCCTGCCTCCTTTAAGGGAGGAGCTTGCAGGCACGGAGGTCCTGTGCCCCTAGCAGCATGCTCCCAGGAAGGCCATGAATGTCAGGTCACAGTGGCGAAAGGTTGGGCACTGTGTGGGGTTAACTGGAGAGGACACGGTGTGGGTGACCCCTGAGCTCCAGTCTTGTGTCAGT-----TTCTTTGAGCACAGTCTTCTGGTGGATACTCTCCTGCATCGAGCTACCTTCTCTGTGTGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTTGCGAGTCGTAATTTATATTAAAAAGATGATAGACTTTTAAGATACATTTTTTTTTCCAATAAAAGAATTAAGCAAAACGGTTTCAGAGTAATCACTACAGATGTGTGTTACATCAACAGCTGGGCATGGCTGATGCAGAAAACGTGGCAGAGATGGACTTTTGTTCCAACAGAG
s HiC_scaffold_1 140343772 2989 - 233722169 TGTCTCACATATGCTTTTCAACAGTCAGGTGCAGTTCAGGAGCAGATGAGGTCCAAGGGAAACC---GGGACAGGCCTTGGAGTAATTCAAGGGGCTTATAGCTCCTATGGAA---ATAAATGGTGAG--------------TATCGCATGCTCGTGCCTATA-------------------AGTCCTTATAGCCCAGTGCA-----GAACCCTGGTCCTCTGCCAGAATGGGAAGCTAAGGGGtgtggaagaggag----------ggagagtt-------aGAATGGGAGGAATGAGA-ACGTGGGcttcaggctggg-----------------------------gatgtag--------------ctcagtagcatagcgcctgcctggcaagcgcaagggcaggagttccat----ctctggtacaaaaa----------tGAGGTGGgcttc----------------------------agccaggcatggtgacacatgcctataatcctagcactcgaggTGCTGAGGAAGAATGTGGGCACCCATTAGAAGGGCACCCAGATGGTTGGCTACACAGAACTGGAG----------------------AGAAAAGTCTGCATTGTATAGTGGCTTCTCCCTAAAGTCCTCTGGGTGTGTATATGTGTCTGTTTTTGAGGCAAATTCCCCCCCCACCccttttccggtaccagggatcgaactcataactgcctgcttgaaaggcaggtgcttatgccgctgagctaaatccccagcccc------aaggcaaaTCTCT------------------TAAAAAACCGTTTTTG---------TGTGTCTCCGTTCTTAAATTCAGGTTCTGCCATCTTGAAGTTCCAACTCTGT----------CCAGCCCAGAAGAAACGCTGCCCTCACCTGATCCCTGCTAGGATGTACAAAT--CCCAAGGGCCCTTCTTGGCCCCTTTTTCCCCTTTCTGCCTAACA-GTGCCTCTGA-GGTGTGGGA-CTggactcctcctcctctctctggcTGTCACCCCTCCTGGAGATGGG--TCAAGGCAGCAGGACTGACCAAGTGACCACTGGCTGGCCAGAGGAGCTTAGTGGAAACCCTGGACACTCAAGATCTGAGTGAGGAGTTCTCTGGGAATCAGGGATGAGTTCCCTCCTCCTGAATGATGGTCTGGGTGCCAACTTTTTTTAACTCTTAGCCTGGAACTCCTTAGACAGGGCAGGTAGGTGAGAGTGCCAAAGCTGAGGCTGGCTTTCCTGAGAAGCTCTCTACCTCCctgcctttctctcttccctgtgATGAACTAAAGCACATGtcaagcaggggctgggg--agggcAGCATTGCCCAGTCTACTCTGTCTTTAGATTGTAGACTTGAAATTCACAGCcccaggggctagggatttagctcagc-ggcataagcgcctgccttgcaagcaggcagtcatgagtttgatccctggtaccaataaaaaggaaaaaaaccaaaaaaaaaattcacagccCCTCTCCCCCGTCTTTCTCTAATCTTGTTTCTGTAGCATTACCAGCTTCCCAGCGgtcctttttttattaaaattttaatttaagatgATTTAATTGCCCCCACCTCACTCTTCTCGCTGCCGTTAACTCTGTTCCT----GTTACT----GGTTCCCACTGAGTAAGAGTT--GTGGTGGATCTTAAC-TGTCAACATTCCATTTAAGTCTTGGAGGACCTGGCCCACCCTCTACTA-CCTCCCTGCTGGCCCAGgtgagaaaaggaagagggatGTGAGGAGAAAGC--GAATGCAGAAAAGTAAGAGTTAATCTCAAGGTATACTTCC--TGACTGTGGTGAGGTACATAGAGTAGAAATTACTGCCTCTGTAAGATCCTTATTATAGCACAGGAACAGGG--------AGAAGCGGAGCAAGGCTTCTCAAT-----------GAGACACATTTGACCTTGTAGACTGGATAATTCTTTATACT--AGAGGGCTGTTTTATGATTCAGTGTTGAGCAGCATCTCTAGCCCATTCTAG------------TTTTGACAACCAAAAATAGCTTCAGAAACTGCCAGGTGTCTCCTAGGAGCAAAGTTGCCCGAGGCTGAGAATCCCAGCTCTGAAGTCCAGGCACTT-----GTAAGTGGGTTTTCGATCCCCACCCTACTCCTCATCTGGTTATTCCTCATGAGCCATGGATAGACTGGGACCCCTTGGAAAGTAAGCTCAGGAAAACTCCATATCATCTTTATTCTGTGTGTTCCTTATTTTTGTGT---GGCTTCGGGTCAC--CAAGAGGGTCATGTGTTAGTTTCTTTCTTGCAGTGTGAAGACAGGAACAGGCTGCATTGGgattggaggaggaggagataaaagcagcactcacaccctaGCT-CCCGTCCCCAAGCTCAAAGCTCTGTTCCTGTGCCCTAAGACCAGAACCAGACACAAATAAAACTCAGGGAGTTTTATGTGAAGATCAGGACCCACCCCCACCTGGTTGCAGTGTTCTTTGGATGGCAAAGCAGTGGAGGAGAAGGGTCTTCAGGCACTTTGTTTTCTCAGGTGTTTTTTGTTCTGGCCCTTTCTTTGCAGGGTGATTAGGAAAGCAGAACAAGACAGATGAGCTCCTGCCTGCTCTGAGACAGGAATGCTGGGATCTCATTGGCTT--TAACA---------------------GGGTCAGAACTGTGGAATTGGATCCACT-CTCCTGATTCCATACAGCTATCCTTTTTGTCCCCATCTACAGTGACTGAAGTTT-------TTCAAGCGTCAGTGTACTGTATAGTTTTGCAGGGTCTAAGATTGATGGTAGAGCTGCATTCCCAAGTACTCTCGGTTCTAGTCAAGCTAGTTGTCCAGATGGAAATGGCCCAC------------CTTGTTGCCCTAGAAGCTTGGTAGCCTGAGGGCT----AGACTAGG----GATGGAAAAAGG---------GGATGCAGTAAGGTAGAAAG--------GTGGG-AACTCCT-ATCTCCAGCCTCAC-TTAATAGCCATTCTTTGG--ACAGTCTTT-----GGTGCTCTCTTGCCTCAAGCCACCGTCT-----------------------------GTAATGTGTATGGGGTTGAGAGTCCTAATTTATATTAAGAAT-TGTTAaacttttaa-atgca----tttttcaaataaaaaatgtaagcaaattaGTT-----GTAATCATTTCAAGTGTACATTGGATTAAAGGGTGAATACAGCTGAT--AGACAACTTGAAAGTGACTGGCCCTCATCACGATGGAG

a score=7675
s chr3            95237088 227 + 160039680 AAAAATGAGACCAA-AGTATTTTTTAGCttt------tttttctatatattaaaaatatataGTGGGTGTTGGGGTTGAAAAGGGA--GTTTATAATGTAGACATCTTCTCTTGAGGGAGACATGGCCATTACCTCTGGATTCTTTCTACCTGGGGAAGGCAAGAAAATAGAGATTATAATCATAACCACATTCTTTTACTTGCTTTACCCTGCTGCAAACCTT-TTTCTCAGCCCT
s HiC_scaffold_1 140347723 233 - 233722169 AAAAAGACGAccaacagtattttttttttttcagttttatttttctgtactaaAAATAACTAGTGGGTGCTAGGATTGAAAGAGAAAAGCTTGAGATGCTGACATCGCCTCTTGTGGATGAAGTGGCCGTTACCTCTGGTTTATATCTGTCTGGATAAG----GAAAAAGGGAATTACAACCACATCTACAGCCTTAGCCTTTCCTTGCCCTACCCCTACCCCTGCCCCTCACCCCT

a score=65758
s chr3            95239855 3053 + 160039680 AAGAACAATGGCTGTGTTTAGCAACGGGATTTGGGACATGGGAGACTTTAAGATTCGTCAAGAAAAAGGTCCTGGGCTCATCAGT--GAAACTTACTGGTTGAGTCTCTGTGAACACTGAAGAAAGGCTGTTCCAGATATCCTCCAGGCCAATCCTGACACGTTTCCAAAAGGCAAGAGCTGGGCTGGGGCTCGGGCTAG---TGGGTGGCAGGA---TGGGTCTGCGTCTCAGGTGGACAGGAACCA---GAGAAGTGGTGCTGCTC----TGAAAGGGA--------GCACGAGAGCTGCAGCTATGGTCAGAACAGAGGCTCGAGTCCAGAGGGCATTCCTCCAGGTGCCTGTTGCAAGCGCACAACTGGTAGGTGCAAGGCCGGTGTTCTGTGCGGAGTTCATTCAGTGCCCCAACTCGAAGGCGCCCAGAAAGGCCATGCAGCTTTCCAGCCCGGCTCCTACTCATAGTGCCTGACTTACAGTGGCAATGCCAAGGGCCCCAAGGCATCAGTACTACCCGCAGATCCTCAGGAGATGGCATGGCTGTGAATGAGGGTTTTAGCCATGGGGATGGGGTGGACCCGGGTGTCGACCACTGTTGCAGGGT----GGACTCAGAAGACAGGTCCACCAC------AGTAGTCTTTGAACTGAGGGACCGCACGTCAGTGGTCAGCTTAATCTCTCGCTCCTGGCTATTGGCTAGAAACCTCCCGGTAGTG------CCGGAACTTCCCACAGTATTGGTGGTCGAAAATAAACTTACAGGGCCGTTGGTGG-----TTTTTCTGGTATCAA---CCACCCCCTCTTCCAAGGAGCCATCCTCCTCCCAGTCACTGGGGCTGGGCACTGATGACCGGCTATAGCCTGTCACGGTGGACAGGAGCTCAGCAGCTGCCGGGAGGGCCAGGCGGTCAGCAGTGGCCAGGGCATCATTTTCATCCTCCAGGGTTACCCTCAGCTTCCCGGGTACAGTGGTCCGGGCGG---------TGGGGTTTGTGCTGTGGAGGCTGCGGGCTGGGCCCCCAAAGCGGAAGCTGACCCGCTGCATCCCAATCGTGGTAGCGGTCGGGGTAGTCGTTTGGTCTTCGGCCCCCGCCGCCCGGTACTCCAGACTTAGCAGCAGGGCCCAGAGCAGCATGCAGGCGGCGGGGACCATGGGGCTGGGAGTCTTGAGGTCGAGAGGTAGGCCCAGGCTCCTACCTTCTCTCCCTCCCTTCCGCT---CTCCACCAACCCGCCAGGTCTCGAGGTCGTTTGAACCGACCAGGAGGGTGCTCAGAGGCACGTGCCTCGCCCCTCCCCTAAGTGCTCTTACTGCGCAGGGCCAGCAGCCCCAGGGGCTGAGCTAAAAGTCCGGAGGAACCCTGGTAAGCAAGAATTCTGTGCAGGAACCAGAAAGATTGTGATGTAAGGGCTTGAGGGGAACCTGTTGGTCCCTAGG--CACAGACTTAAATCTCTCATCACAGTTTATTAAAGGTCACAGGTCTGAATTTACTGAGAGTGAA-AACACAGGTTTTGACAGCAG---TTCTCAGGATCACAGGCAGCTGAC--TACTAAGAAGG-----------GGTTGGCTTTTCAAGATTTTGCAAGCTGGCTCCTGGGCTCCCGGCAGACAGGCTGGCTGTGGCTGCTGGTTAAGCCTTCCAT-----CCACCTCCCCTCAAAGACTGCTAAGACAACTAAACTGGGAAGGATCCCAGTAGTTTTGATTACAGAGAAGGAAAATGAGACCCACATATTTTACAGCTAAAGCAGAATTAAAACTCAGAGCCTTACACTTCCAATGCCACACAGCCTTCTTTTTGGACAGCCGAAATGCAAGCCACCCCCCACCCCGTTCTGGGGTTCCCACCCTTAAATCCCAGCTTGAAGGCAGTGTCCAGAAGTG-GGCGTCGCACTGAAAAGTGAGGAT--CCGGTGGAGCTGGCCCTCAGGATGAGA----TGAGACATAGCTCCCCCATGCAGA------CCACTCATGATCTTTGCCAGATCCTAGGCCCTCTGCCCAGCTTTGTGTTAGGTGCCTTTCGAGCCATGCAGATCCCGGTCCAGCCTAGAGGGATAAGGGAATGGAAAGATGAATGGGAGGAGCTAGAAAACTGAGTGCTTGCATCACTTCCCATCCTTTGCTCCTAACATGCTCCCCACTGGATTCTATCTCTTCCTTGCAGGCTTTACCTCTTCCTAGTACAGAAGGCACGTAAGAACCTGAGGACGACACAGACTTTCCGTGTTGGGGTTATTCTTTGGTGCCCCCCACCTCAGTGTCTCTTCCATGACATTTTCTTTTTTTAATATAGtttttttcttttcttttcttttctctctctctctttctttctttctttcttttttctttttcttttttttttttttttgttttgttttgttttgttttttttcgagacagggtttctctgtgaggccctggctgtcctggaactcactctgtagaccaggctggcctcgaact--cagaaatccacctgcctctgcctcccaagtgctgggatcaaaggtgtgtgc-----caccactgcccagctTCTGTGACATTTTCATCTGTCCTTTAAGTTCTATTTATATTTACTTATGACTGCGCGCGCGCGCGCGcacacacacacacacacacacacacatacacacacacacacacacacacGTGTGTGCGCCCGTGCCATGGACTTATTCCACCGTGGGGGTTCTGGAGACTGAATCCCTTTACTGATTCATTGCACTGGTGCGC-------CTTTCA--TGTGACAAATAATATAG---TGTCCTTCATTTCTTCTCTAGGTGTCTGCAGTTTTCC------CACTGACACAATTAAAGGCAGGGCCCGTGTATCTTAGT-TCTTCGTATCTCCCCAGAGACATTAAGA-AACACGATTGGCTTTAGACATCCCATCCCAAACCAGCTTCCCTAAGTGCAGGACTCACTGTCTGACAACTTCCGGTATGTGCACTTGCTCTAGCGAGATGAGCTGGGCCAGCTCTCCGAGGCTGTCCAGAAAGCGGATCTTTCGTGTGAACTTGGAGCTGAAGAGA-AGAATAAACC-AGTCTTACTTTGTAT--------TGGATCCTGGAGGATCTCACATAGGGAACAGGGACAAGCCGAAT
s HiC_scaffold_1 140349743 2670 - 233722169 aagcacaCTGCTTG-GCTTAGCCCAGGGCTT---GCAGTGTCAGACCTTCACACCTGCCTCAGTAAGGATCCCGG-CGCATTGACAAGACACTTACTGGTTGCATTTCTGTGAACACTGAAGACAGGCTGTTCCAAATATCCTCCAGACCGGTCCTCACCCGTTTCCAAAAAGCCAGAGCTGCACTGGGGCTGGGGTAGGCGCTGGGTGGGAGGGGGCTGGGCCTGCGCCTCTCGTGGATTGGGGGCATGGGagaagtggtggtggtggtggtgatggtggtggtggcggcCCGAGATCTGCAGCTCGAATCATGGCAGGGACTCGAGTCCAGGGGACATTCTTCCCGGAGCCGGTTGCAGGCACAGTGCTCATAAGTGCAAGGCCGGTGCTCTGTCCGGAGCTGGCTTAGCGCCCCAACTCGAAGACGCCCAGAAAGGCCGTGCAGCTTCCCAGACCTGCTCCGGCTCATGGTACCTGCCTTGCAGTGGCAGTGCCACGGGCCCCAGGGCATTAGCACCAGCCGCAGATCCTCAGGGGGCGGCATGGACGTGGGAGAGAGGCGTGGCCAGCCGCTGGGCTTGGAGCCAGCCGTGGACCACTTGCTCAGGCTCTCGGAGCTCAG----CACGTCGCCCTCCTGGCTGGTGAATCTCGTGGTGGCCGGCGGCAGGCTGGTGGACAGCCTGATCTCTCGCTCCTGGGTGTTGGCTGCAAACTTCCCGGTGGTGCTGGCACTGGCACTGACCGCTCTGCTGGAGGTCTTATGGGAGCC-----GGCCCCTGGGGTGCGGCTCTTTCTGGCGTAGATCGCCACCCCCTCTTCCAGAGAACCGTCCTCATCCTCGTCC---GTGCCGGGCGTGGCTGGCGAGCTGATCCCGGTCACCGTGGCCAGCAGCTCCTCAGCGGCTGGGCCAGCCAGGCGGTCAGCGGTGACGTGGGCGTCGCTCTCGTCCTCCTCGGTCACCCTGGTCCTGCGGGGAAAGCGGGTCCGGGCCGAGCGCgacatgctgctgctgctgctgcggctgCGGGCTGGGCTCCCGAAGCTCAGGCTGACGCCCCGCGTCCCTGCCGGGGC-----TCGCGTCTGAC-CTTGGtgccccgccgccgccgccgcggaCCCCAGACTCAGCAGCAGGGCCCAGAGCAGCGTGCAGGCGGCGGGGACCATGGGGCTGGG-------------------TGGCCCGGGCTGCTGCCGCCTCACCCTTCGTTCTGCTCCGCTCCACCGACTCG--------CAGGGTCGTTGGAACC-------------------GGCGCgcgcccccccacac-----------------acacacaccccgcacCCCCA---GCTGAGCCTCTGGTCTAG-GGAGCCTCGGCCACCAA----CTCGCGCACAACCCCGGCCGATTGTGATGCAAGG--CTGGGGGAAA-------GGCCCTGTGCACACAGGCTTCAGTCTCATATCCCAGTTTATTAATCGCTACAAGTA------TAGTGTGAACAAACAGTACAGGCTTTCAAAGCATGCCTTCCCAGGCTCACAGGT-GCAGACATGACTTAGAAGGAAGAAAGGGCAGACAGGTTCTTCAGGATTTTGTGAGCTGTCTCCT-GGCCCTCAAAAGGGAGCCTGGCTG-AGCTAAAG--TAGGCCCTTCCTGTCCATCATCTCCCCTC--AGACTGCTAGAAC-ACCAAGCCGAGAAGG---------------------------------------------CTGTAGAGCAAAAGCAGGATTAAAACTCGGAGTTTCCCACTCCCA-----ACACTACCCTC---------------------AGGAACTCCAAACTCAGCCCTG---------------------AGCAGGCAAACAGGATAGGGCAGGGAAGTGTCCCATTGAGAAGTGAAGGTGGAAGGAGAGGTTGGGCTTCAGGATGAAAACGTTTGCAAACAGCTCAGGGATTAGGAAGTGTTTAGATCATTATCTTTGCTTGGTTCAAGGTCCTTTGTCCA-------------TTCCTCTTGAGCCACAGAGACCCTGGTCCAACCTACAGGG--GAGGGAGTAAGGAGATGAATG------------------------------------------TTGTT------------------------------------------------------TGGGGCAGAAGT-----------------------TGGATTTTACTCACTGG---------TTGGTGA-----------------ATTAGATGA---------GCTAAAAGattgttttttgctgttgttttc--------------------------------------------------------------------------------tttttgagacaggatctctctatgcagttcaggttggccttgagctcactttgtagcccaggctggtcttgaacttgcaaggattctcctgcctcaacttcccaagtactgggattacaggagtgcacctaAGCACC-CTGCTAAGACTGGGTG----TTTGATTCAGTATTTAGCATCCTTTGCTCCTTA-GTATGATCG---------------ATTCAC---------TGTCCACAGATCCCTTTTGAATTTCTAGGGCGACTCTAAGCCCCC----------TTTAACTCTATGTGGTGATTTTG-----------CCTTGGC-----CTCTGCACATGTACACGTGAAGGTTTTCATTTGTTCCTGTTAACACAGTCCTGTGCTTCACATC-TCCCTGAGCATATGCACTTTTCCTAAATACACTGAAGCAGTGAAA-GCAGAACCTCTACCTTGTAGCACCTTTGTATCTTCCCAAGGCAATTAGGAGGAGGGGACTGGCTTTACTCATTGCACCCCAAACCTTCATCCTTTAGTGCAAGACTCACTGTCTGACAGCATCAGGGATGTGAAGCTGGTCTAGGCAGATGAGTTGGCCTAACTCCCCCAGGCTGTCCAGAAAACGGATCTTTCGTGTGAACTTGGAACTGAAAAGACAGAATAAACCAAATCATGTTTCATACCAGCAGGGTGGCTCCTGGGGACCTTTACAGAGAAAAATGTAACAAGCAGAAT

a score=7876
s chr3            95242987 235 + 160039680 GAACCAGTACCTGATGAAGGGCCGAACCAGTGCCAGGAAGGCCTTCACATACCACGTAGCGTGGACGACCACCAGGGCGCGAAGGTTTTTCCGAAGCCTGAGGAA---------GAGTCCAATACAATCCTGAGTTCCCTGTTCACATTTTTTAGGAGGAGCAGGTGGGTTATCTTCC-ATGCTGCAGGTGCCTTGGTGTATCTTTTTCCAAAT-------TTCCCTGGCAG---CTGTGCCTAACTCCACATTC
s HiC_scaffold_1 140354548 244 - 233722169 gagcTAATACCTGATGAAAGGCCGAAGCATCGCCACAAATGCCTTCACATACCACGCAGCATGGACAACCAACAAGGCCCGCAGGTTTTTCCGGAGCCTGAAGGAGAACGTGATGAGATCATTCTATTCCTGGGTT---TGTCTTCATGCTT---GCAGATCAGGTAGAGCCTTTGCCTATACTGCAGCCGCCCTTG-----ACTTCTCTAAATGATTCGATTCTTTGCCAGTTACTGGATTTAATCCCCCATTC

a score=11863
s chr3            95244042 342 + 160039680 gaaaaggaaaGGAAAAGAAAACCCCACAAAAGATCCAACTGGAAGAAG-AGAATGGAAGCGATGCTAGA---------------GAGTTGTGGCCCTCTTGTAATTGGGTCTCACCTCCTGTCCAAGGTACGGTAACACTGCCGGATCCAGCTCAGAGGGGGCACTTGGGCCCTGCTGGTGCCTCCACTCAAGTGAACAAGCAGATAGTTTTCAGCTACCAGCAGCTCCAAAGTTCCCACCATATACCTGGGGA--------CAACATTGTAGGGAAGGTGGATGCTGCTGTTTCCCC--AAACTCAGG-AACACGAATAGAGAGAGCCTCCAGTCAGCGATGGGTTTTGGGCACAGGT--CTTTTCTCTT
s HiC_scaffold_1 140357139 363 - 233722169 GGAAAGTGTGGACGAAGAGAGCATAGTGAAGGCACTAACTGGCAGAGGGAGGACTGGAAAGATGGGAGATGAATGGGAAGGTAAGAGTCACAGCACCCTCAGCCTGAGGTCTCACCGAGGATCCAGGGCACGGTAACACTGGCGGATCCAGCTCAGGGGTGGAACCTGGGCCCTGCTTGTGCCTCCGCTCAAGTGAACAAGCAGATAATTTTCAGCTGCCAGCAATTCCAGAGTCCCCACCATATACCTAGGGAGGGGTGGGAGACATTGCAGGGAAG--GGATGTGACAGGGGCCCAGGGAATTCAAGTAACATTAAT----GTAGCTTCTAACCAGCTACTGA--CTGAACAGAGATTGCTTTTCACTT

a score=4422
s chr3            95244139 195 + 160039680 ACCTCCTGTCCAAGGTACGGTAACACTGCCGGATCCAGCTCAGAGGGGGCACTTGGGCCCTGCTGGTGCCTCCACTCAAGTGAACAAGCAGATAGTTTTCAGCTACCAGCAGCTCCAAAGTTCCCACCATATACCTGGGGACAACATTGTAGG--GAAGGTGGATGCT-GCTGTTTCCCCAAACTCAGGAACACGAAT
s HiC_scaffold_1 180022922 190 - 233722169 ACCGCCTGTCAATCATCTGGTAGCACTTCTTCATCCAGCCCAGTCCTGGCATCTTCCGCCTCGGGGTTGCACCATTCAAGTAGACGACCATGTAGTCCTCGGCTACCATCAGCTCTAATGTGCTTATGACGTAGCTG--------ATCATGGGAAGAAGAGGGGTGCTCTCAGTTCTATTCAGCCCATGAACACCAGT

a score=10674
s chr3            95244915 259 + 160039680 CACCTTTCATTTTCTAGTTTTCCCCCGGCTTTGTCCCTTCCACAAAAGCCCTTTCGGGTTTCACCTCACCTGAATAAGTGTTCCATGATGTAGGTGTAGTTGGGGATGCTGCTTCGGGGTAGATAGCAGGAAGCAAAGAGGATGACAGCATTGAGGCCATCACCATGGTAACCTGAGGACCAATATAAGGAAAATAGACTCAATTACAGATCTGTA--AATAGACAGTACTTCTGTTTAGGGTGAAGGATAATGAGGTCTT
s HiC_scaffold_1 140357497 237 - 233722169 CACTTTTCCCTCTCAAATCCCCTTC-----TTATAGCTTTCAAA-----CCTTTCA--------CTTACTTAAACAAGTGCTCCATGATGTAGGTGTAGTTGGGGATGCTGCTCTGGGGTAAATAACACGAAGCAAAGAGGATGACAGCAGTAAGGCCATCACCATGGTAACCTGGGGA-Caataagggaaaaactcactc-CCCACAAATACGTATCCATAGACAGTA----GGATTGGGTTGAGGAATACTGAGATCTT

a score=4725
s chr3            95244979 127 + 160039680 CTCACCTGAATAAGTGTTCCATGATGTAGGTGTAGTTGGGGATGCTGCTTCGGGGTAGATAGCAGGAAGCAAAGAGGATGACAGCATTGAGGCCATCACCATGGTAACCTGAGGACCAATATAAGGA
s HiC_scaffold_1 180023675 127 - 233722169 CTCACAGGAACAGATTTTCCATGACATAGTGGTAATCCGCCCGACTGCTGTCTGGCAGAAAACAAGCAGCAAACACAATGATGGCATTTAGACCGTCCCCATAGTATCCTGGGGACAAACAAAAAGA

a score=14484
s chr3            95245639 677 + 160039680 TTGCCACTACCTCCATGAGATAAGACTTTCTTATAGGGCTCAATGATGGTCATGTCCACTCGCTGCTCTCGTTGTCCTGTTCGAAACACTCTCCAGCGATGACCGTCTTCTCCAGCCACATCGCACACGCATCCCCGGCCCAGTCTTTCTGCTGCCTCACTGGCCCCCAGGCCCTCTGCCCGGGGCAAGTCATCTAAAACACACAGGAGGGAAGAATGAATGAGGCAGAGTT---------------CTTATAATCTC-CTGGATCCGTAC----------AGTTTACTCCTCCAGTCTTTGGTTTGTTTGCttgggtttttgatagaaggtctcactgtgtggctcag------gctggcttccaactcctg--actcttctgcctcagccttctgagtgctagtatacctgttttaacctccCATGTTTCATTGTTTTCACTGGCTCTCAGTCTGTGCAATTCATTCATCAACTTGTGTCTCTTTTGCCTCTTCTTAACTTTCTCTTTCACTAGACTATACCCTTAGGGTTCTCTGTCTGTCTCTGTCTCTCTCCTTTTCCCCTTCACCAC-----------------AATTCctccctccttccctccccatacctggtgtgtgtgtgtgtgtgtgtgtgtgtgttgttttggagacaag---tatctatttagccttggccatcttggaactcagtatgtaggaccaagggtggcctggaactcaca
s HiC_scaffold_1 140357742 655 - 233722169 TCGCTATTACCTCTATGAGACAGGACTTTCTTATAAGGCTCAATGACAGTCATGTCCACGTGCTGTTCCCGGAGTCCTGTTCGGAACACCCTCCAGCGATGACCATTTTCTCCAGCCACATCCCATACACAACCTTGGCCCAGCCCTTCTTCCGCCTTGCTGGCCCCCAGGCCTTCTGCTCGGGGAAGGTCATCTAAGACAGA---GGGTGAGGGGTCAACAAGGGGAGGCTTCCAGCCTTAGGCACCTTCTAACTTCTCTAGATCTGTTCTGAGGTTACTAGTTTAACATCTCACTCAATTATTTCCTTGCCT---TCTTAGCCAGAATATCCAAC----TAACCCAACCTTTTGCTGGTCTCTTTCTTCTGTAACTTTTTATCCTCGATTTTTCACTGGTTGGTGACCTTGGGGTAGGCTTGCA--------------CAATGG----CAGGTT-TATAACTC--TTGCCagatgctgttttttt------ttcttaagtcttTCTT---------CACATGTTT----TTCACTGTGTGAGCACCTCTATTCCCATGTTTTCATTACCACCCACGAAATGACTTGCAAAttggcctttctttctttctttat------------------------tttttttgtcttttttgagatagggtcttgctatgcagttcaggctggtcttgagctcactttgtag--ccaaggctggtctcgaacttgca

a score=4147
s chr3            95245645 111 + 160039680 CTACCTCCATGAGATAAGACTTTCTTATAGGGCTCAATGATGGTCATGTCCACTCGCTGCTCTCGTTGTCCTGTTCGAAACACTCTCCAGCGATGACCGTCTTCTCCAGCC
s HiC_scaffold_1 180029880  94 - 233722169 CTACCTCCATGGGAAATGACTCTCCGGTAGGGCTCGATGACCTTCATGTCAATCCGCTGCTCCTG-----------------CTCCCCAATCACCACCGTCCTCCACAGCC

a score=15245
s chr3            95248537 302 + 160039680 TCTACCTCTACCAGCCCCACCCTCGGCTTGGCTCCCACCTTCCCATTCAAACTCATGTCCGCTGTCCAGCTGCTCAGAGTCTGATGGTGTCTCCAACTCATCCACCTCCAGGTCCAAGCTGCCAGCAGAAGAGGAAGACGCAGAGCGGGTGGGAGAGGCTCCGTTTTCTCCTGTTCCCTCAGTCAGACTCAGCTGCCATTCTGGGGCGGAAAGACGCTTC---------CGCATAGGGCGCTGGCCACACAAGGCCAGACTGCTGGGGGTGCCTGTGATTGGAAGATAGGAGAA------AGAAAATACACAGATGG
s HiC_scaffold_1 140360331 317 - 233722169 TCTACTTTGGCTAGTTCTGTCCTGGGGTTTGTCCCCACCTTCCCATTCATATTCATGTCCACTGTCCAGCTGCTCCGAGTCTGAAGGTGTCTCCAGTTCATCTACATCCAGGTCTGAGCTGCCCTCAGAAGAGGAAGCAGTGGAGTGGATGGGAGAAGCTCCCTGATCTCCAGGCTCTTCTAGCAGATTCAGTGTCAGTTCCGGGGCAGACAGGAGCTTCCGCATAGGGCGCATAGGGCGCTGACCACATAGGGCTAAACTGCTGGGGGTAGCTGGGGTAGATCAAGTggagaaatatataaaagatgcacatatgg

a score=22432
s chr3            95249616 1623 + 160039680 ACaataaaaaaattaaaatt--------taaaGGCGATAATAGCTGTGCATTTTGAGAAAGGGATGTAACCTAGGGTAAGTGGAAAGGGAGAAAGTTGGG-TACAAAGAGACAGAATACACAGCGACACCCTCGCCTTAACAACAGTGCCAGAAGTCAACTCAAACCCCAGGTCTAGTTTCCACCTTCCTTTCCCTACCTGCCTGTGAGCCTCTCTGAGGGTCTTCAGGGTCTCCAGGTGAGCCAGGTTCCTCAGGAAGCAATCTAGAGGGGAGGGAATGAACAGGGCTTTAAACACAGACCCCAGCCAGCTGCCTTGTCATCCTTCCCTCT-CCACCATGCTTCTTTCTTTTCTTGCCCTAATTTCCCATAAATTTGtttggttttaggtctgtgggtgcattttgtctacatgttgatctgtgcaccacacatgtgcctggtgctcttggagctcagaagaaggtgtcagatcccctgggactggagcaaaggatgacagagaggcaccacgtggtctccgagactcaaacctgggGGCGAGCAGCTCTCAGCCTCACCTAGGAAACTCTTCATCTTGCCACTCCTCTCTTAGCTCCAGCTCTCCAAGTTTCATGGTTGCTCCTGGTTCTGA----GGCTC--CTGCCTTCTCCTTAGCCCTGAGAGTCAGTGGCCCAGAAGAAAAGAC---CATGAATCAACCTAGACAGTATCCTAAGGGAGCCAGACATCAGGTGGAAG------------------------------------------------------CCACTGGTGTGAAGAACATGGCAAGGAGG--------------CCCCGTCTATGTGTACAGGC--------------------------GTTTTCCCTTCCCACTTGACAGAGCAGCTC-ATCTGCTGCTCAGCTTAG---CAGAGGG--GATGGCCTAGCAAGCTAATCCACTTG-----ATGGTAGTGGCTTCACCTACAGTGTAGGAGTGAAAGGCGTCCCATATCCCGACTGGCTGGAACCCAGACAGACCTGCCCAGTTAACCCTGG-------GAAAAGCAGTAGCAGATGGCACCTCGTCAGCCCAGCCTTTCCCCTGCTGTGCTTGGAAACTATGGGACAGGTACAAGGATGGAGGGAAAAAAGGAGATACTCACTGGGAAGCAGAACCAGGGTGTACATTTGGTTCTGGGCCAGGTTTCCTAATGGCTATTGTAGAGGATGGGAGTTATAGGAGAGAGGGGGAGGGGGAGGGAGAATG-----------GATCTATTACACATAAG--ATAGAAACTTTTCTTTAAA--------------CTGTGGAG----------TTGGTTCCATACTGTATTCGT--TTCCTGTCCCAAAACCACTCGGTCCCTTCTCTGCTAA------CTTCTCCCCATGTTCT-----TCTTTGAGGAAGCC---AGGAAGGCCTGGCTGGCAGGGAACGCCCTCTCTGGCTCCA------GTCAGG---CCAAGGTCTCACTTACCCTCCTTCTAACGTCTCTCTTCCTGTTTCTTGCCTGGTCCCCATCTTCCCAGGTCGTCCTGTGTCCTGTGGGACTTGAGGAGGATAGGAGGCTGTGGCCCCAGCCCCCAA--ACTCTTTACTTTCCT--GTGTCAGC---TGCTGCTTTTGC-TCTAAGGAGGCAGGAGGTGTGGAAGGGAGGTAACCTCATCTTCAAACAGGTTTTGCCACCTCCCCTCCCAAGGAGCAGGTTTGCCCCAA-----AGCCCAGCCTCTTGTGTGGGGGCGGGCTTTCAGGTGAAGAG
s HiC_scaffold_1 140360801 1620 - 233722169 ataaaaagatagTTAGAATTCCTGTGGATAGGAACAATAGGGG--GTGAACTCTGA-AGACGAAAGTGACATGGGACATTTGGGAAAGGGGGAAATGGAGCTGCAAAGGGATAATA---GCAGCATGGCCCTTAAGTGGGCTAC--CGCCAGGAA------------CTGAATCCAGGTTCCACTTCATTC-----ACCTGCCTGTGAGTCTCTCTGACCATTGCTAGGCTCTTCAGAAGGTCCAGGCTCCTCAGGCAACAATCTACAGAGTA---AAAATAAGGGGCT-----CATAGTCGCT--TCAGATG----ATCCGCTTTCTCCCTGCCACATTACTGCATCCATTTTTTCCCAGCTCTTTCC---------------TTCAAGTCCAAACTTGCCCTCTGTTT-------------------------------------------------------GTGGCATCTTTCCTT-------------------------------------TCTCCCAggctc---tct------------ctcccttcctcacctAGGGAAGTCTTCATCCTGCCATTCTTCCTTCAGCTCCAGCTCCCCAAGTCTCAGGTCTGtgcctggctctggctctggctcttcTGCATTCTCCCTGACCCTGAG--TC-----CCCAGGAGAAAAGATTATCACGGAACAACACAGACAGTATTTTAAGAG---CAGACACTGGGTTGGAGGACAGTTGTTAAGCTACAGAGAGCACACCTTAGAGTAAAAGAACTCAGCTAACTCCAGTagtggggaggttgaggcaggtagggagttcaaggccagcctgggttatgcaATGAGacaactcagaaaacaaaacaaaaactcagattTCTGGTCTC-TTATACaatgtttctctattttcccctgaGTTTAGGGGCAGAGGAAAGATGACGTGAGGAGCCAATCACATTGTCCCTCTGGCTGTGGCTCCACCAATGACACAGGGGTGAGCAGCGTCCC-TGTGAGGAGTGGCTGGAACCCAGACCGGCCTGCCAAGCCTTCCCGGGCTGCCAGGGAAACTGCCGGTGCAGCACAGCTGGTTGGGCCTGCTTTGCTTCTGCTCTGCCAGGAGTGGCTGCACCTGG----AGCACGGAGGAAGGCAGGGAGCT--TTGCTGGGAAGGACGACCTGGATCTAAATTCACTTCTGGACCAAGCATTC---------------AGTAGGGGAGTTA--GGAAAACAAAccagcaaacaaaacaacaaaccacAGGCAGATTTATCAAATACGAAGTATAGAAACTTCCATTAAAAAAATCACGTTATTATTCTGGAAGCCCAGTTGCTCAGTTCCAAACCGTACTGATACTTCCTACCTGAAGGCAAGCTAG-CCCTTCTCTGAAAATTGATTCTGCTTTCAGTCTTCTCCACCTCTGAAAAGAAGCCCTAGGAAGGGGCTGGATGGTGGGAAA-----TCCTGGGCTCCACACCCTGTCAGGTAGCCATGCTCGTACTTACCCAAGGTCTGATGTCTTTTCTCTTGCCTCTTGTACAGTTCCCATCttcacag-tcttcctgcctttttTAAACACCTAGAAGT------TGCTGGTGTCCTGGCCCCTAACTGTTTTTGACCttttttggccccagcccttgtTGCTCTGGCCTCCTTGGAAGAGGAAGGTGTGGAAGGCAGGCAACCTCATCTTCAGACAGGTTTTGCCACCTCCCCTCCTGAGGAGGAGGTCTGCCCAAAAGAACAGCCCTGCCTCCTGCGCAGGGGCGGGCTGTGGGGAGGAAGG

a score=54254
s chr3            95253600 1852 + 160039680 GAGATGAATCTGTGGGAGGT-GCAGCTATTACCAGAGG-GAAGGCCTGATTATACTTTTAAAAAGAAACAA---GACCTCAAACAGAAAGAAAGTATTTAATATGAAACAAAAATGCAAAACAAAGTACCAAAGTCACAGAACACAA-TCCCTTTGGTTCAGTGATCGCACCAATATTTCACGTTCCCATTGGCTACAGACGTCATACACTAAAGTGAAGTCAGACTGCCCC-------------------------AAACCACCACACACCCTACTGTTCAGCGATATTGTTTGCAACTTATATAGGGTAAGAACAGGGGAAACAGCTTGATTGGAAAAAAGGGGGATGGGAGGTGGGGGAGGCGAGGGGAGACTACACATGCGGAACAAATTACTGGGAGAGAGCTCGCTGCTGGGTCACCATTACAACCCTGTACATGCTACATGAGGCTAAGTTCCTTGGTACAATCACACATAAACACGAAACAATCCAGTGACCCAGAGCGCGAACGCTCCCAGGGAGG---ACAAAAGTAATGAGGAAGCAGAGGGGAGAAAGGCTGGGAGGAAGGA--------------AGGGCACATCTTTTCCTAACCTCAGT-TACAGGTGGGGA-AATGGGACCCGGGACAGAGGATGTCTCACCAGAAGACTCTC--------------------------CACGCATTCTTCAACTTGAGCAAAACCAGAAAAAGACTGACAAGACCTTGGCAGACCCACTAAGACAGGGGATA--TCCAGGGCTCAGTCAGGTTCTGCCCTCTTGGCAAAAATGCCTCTGAGGTCCCATGGCCACCAGGAGAAAGCAAGGACCTCAATCCTCAGGTCCCCGTCAGGCTTCCCATCATTCTGAGACAGAAGGAGCCAAAGATATAGGAAGTCAA----GACAAGAGACCAGCCAGGTTtaatgcagtgcttgacaatctcagc-actcaggagagttaggaattcaggact-------agcctcagatacatacagag-----ctcaaggccagcct----------gggctacatgaggctctgtctcaaaaataactttaaaaaaaTTGAAAAGGTCAATTCATGGAGAGGAGCGGTGAACTGGTTTCATGGCAGACGCTGCCTCTGTTCACAGTCCTT-CTGAAGACACTGAGATGGGGTCTACATTCCTTTAGTCCTGCTCTGCCAGGACAGTGG-----TCCTATCACACTGTACCC--------ACCAAAGACAGGAAAATCAGTGCAGatt-aaataataaaattaa---ataaatCTTGTCTTACTGGTA-GAGCCAGGAGAGGAGAGGCAGAGAGCTGTCCCTACAGCAGCCGCTCTC------------TTTCTCT----------------TTCTCCT------CCCAAGGTTATGAGAACAGTAC----ACCCGATCCT-------GAAGCCACTGAC---GTAGTTGCT--------------------------------------------------------GAAGTGGTCAAACATCTCAAAACATGCATTTGAGGCAGGCCAGTCA---CCTCCTCCACACTTCCCCACCCTACTTCCAATGGTCACTTATTTGATGTGCAGGCTCTGGCAGACTGGGATAGTGAGATCTGACTGCACTTCTCAAAGACAGCCTCAGCGGAGAACTTAGGCAGCCCCTGATCCAGAGGGCACTCATCCACCAAGCTGTTCATAGGCGTGGGTGGCAGCGGAGGGTCTTCCTCATCTTGACTCAGCCCAGAAATCAGGGAGTTACTTGCCTTGTCCAAGTCCTTGTCCACCTGCTCCCTAGACATACCCACAGCTACCTCAGACTGCCCCGAAGCCATCTTCGCTGAGTCAAGATATGCGGAGAGGGCTTCCTGGAGCACAGGCAGCAGCTTCTTCCGAGAGACCTGGGTGTTGCCTTGGTGATAGGCCTGGAGGTTAGGGGAGGTGCTTGGGATAGGTGTCAGCTTCAGGGGTGGGGAGGTGGATCGTTCCAGGATGCCACAGATCT--GTAGAAGACAAGAACAGGAGATG
s HiC_scaffold_1 140363309 1987 - 233722169 gaaataaacctGTGAGAGATCGAAACAATTACCAAAGGTGAAGGCCT-ATTATGGTTGTAAAAGGATACAATGAGGCCCCAAACAGGAA-AAAGTATTTAATACttcaacaaaatacaaaataaagtacCCAAGTTACAAAACATAAATTCCTTTGGTTCAGTGATCACACCACTAGTTTTACCTTCAAATGGCTACAGGCATATCCCCTTACAGTGAAGTCAGATTGTCCCCGTCACCCTGGAAGATGTCATACTGAAACCATCAAATACCTCACTGTTCAGTGAAATTGTTGGGAAATAAGAAGGGGCAGGAAGAGCAG-----GCTGGGCTGGcctgaaggagga-------------------agggagactACACATGCAGAACAAGT------GGGGGTGCTTTCTGCAGGGTCACTGTG--------GTACATGCTACACAAGACTTACACCCTTGGTACAATCACACAAAAACACTGA-CAATTCAGCGACCCTGAGCA-------TTCCtgggaaacaaacaaaagatgcagacaaactgaagagagaaaagacagcaaTAGGCAGATCACAGCATACAAGAGAACATCTAATCCAAACCCTGTTCTACAGATGAGGATAATGAGACCTAGACACACCAATGTCTTGCCAGAATACACACAGGTTATGGCCATTGGTATAAGAACTTGTGCTTCCTTTTAATACAaccaaac-agaaagaaatggatAAGAAAGTCACTGACCTGCTATGGCAGGGGACAAACTCAGGATTC--------TCATTCCTTTTAGGAAGAGAAC---TCAACTCTCAAGA--ACTAGGGG----------------TCTTCAGGGTCCCCTCAGGGTTCCTGTGACACTGGGACTGAGGAAcccaaagaaacagaaagctgaTTGGGACGGATGGTTAATGGCCTTCAGTCTGTTCCCAAACAAGCCCTGCCAGGAAGAAGAGTTAGAAACCTGAAAATCTGCTGAAGGCTGAAAACTAGAGTGAGAGTTTCTAAAGTGTATCCTCCTTCTATCCAGTTTGAAATagg---tatttaataaatacttaataagtaaaagaagaaatgaactaGAAGACACTATCAATGA-CTGGTTCCATGACGAATATTGA-TCTATTCAAGATCCTTACTGAGGACACTT---TTGGGGTTACATTCTTTT--TCCCACTCTGCTGGGACTGTGGGTGTATTGCATTACACTGTGCCCCCTGACAAACGAAACAGAGAAAAGTCAGTacagatttaaataataaaattaagtaataaCATCTGTCTGATTGGTAAGAGACTGGAG-GCAAAGGCAGAAAGCCATTCTTTCAGCAGCTGCTTtcgtgggctggggatttagctcaggggcataacagcatctgcctggcaagcacaaagtcgtgagttcgatcccggtaccctacccccccaaaaaaagtcaCTAATCCAGCAGCTGCTTTCTTGCCCTTCCTTCACCCCCAGTTGCATGAAGACAGTACTGTACACCAATAGCCGAAATCTCCGAATGTCTCAAAACATGCAATTGAAGTGGGTCAAGCAAACTCTCCTGTGCCCTGTCCCGTCC------CAAGAGTCATTTCTTTGACCAGGCAGCAGTGGGAGACTGCGACAGTGAGATCTGACTGCACTTCTCAAAGACGGCCTCAGCTGAGAGCTTGGGCAGCCCCTGGTCCAGAGGGCACTCATCCACCAAGCTGTTCATGGGTGTAGGAGGCAGTGGGGGGTCATCTTCATCTTGACTCAGTCCGGGAGTCAGGGAGTTACCTGCCCTGTCCGATCCCTTGTCCCCCTGCTCTGTGGACACTCCCA---CTGTCTCAGGCTGCCCTGCTGGAATCGTCCCTGAGTCAGAATATGCTGACAGGGCTTCCTGGAGCAGAGGCAGAAGTTTCTTTCGAGAGACTTGGGTGTTGCCTTGAAGATAGGCTTGGAGGTCAGAGTGAGTGGTTGGGAGAGGAGTCAGCTTCAGCACCGGGGAGTGGGAGTGTTCCAGGGCTCCACAGATCTAGAGAGAAGACAAGAACGGGAAATG

a score=15874
s chr3            95257961 501 + 160039680 AAGCCTAAATTGTTGTCTCTAGTCTTCAGAACTGTCACCCTCGGAGTGACAGGATGGAA--------------------------ACTCACTGTCATTCGAAGTGCCTCGTGTGGACAGAAGATAGCTAATTGCCGTACTGGCTCATTTTGAGTGTTGAAAAAGATAGTCATGGCAACCAGGGCATCATAGCTGTGATCATGGCAGAAAGAACTGAGATCTGTGAAGAGGTCTGTCCGCTGCAGAAAGGCCTAGAAGGGAAGAAAAAGAAAGCAATCAAA---GTTTACAGGCAGACCGTCCTTATCACCAATGAACTCTAAAGAGTTTTTTGAGCATGCAGCTCATAATTTGTGCATCACTAAAAATGTATGTAGTGCTTA------CATACT-------GGAAACTgtgatagaatagggagaatacaggctttcaatt---aagacagcattgttttgaaaagtagctcaacta--tattatgaataagatccagaagtgatattaaccccctgaacctaaggttcctcaataaaataaaaaGAC
s HiC_scaffold_1 140368034 537 - 233722169 AAGCCTCAA-----GTTCTTAGAGGTAAGAACTGAGGTCCTCAGAGCTTCAGAACAGAGGTGCACACAGGCAAACTGAAAGAAACACTCACCATCATTCGAAGTGCCACATGGGGACAGAAAACAGCCAACTGCCGCACTGGCTCATTGTGAGTGTTGAAAAAGATGGTCATCGTAACCAGGGCATCGCAGCTGTGAGCCTGGCAGAAAGTGCCAAGGTCTGTGAGGAGGTCAGGCCTCTGCAGGAAGGCCtgggagg---gaaaaagagagggatGAGAGCTGTTGTGGGACCCTCTGTCTCTGACAGCAAAAAAGCCTTTAAGGTTTCTTT-GCATCTTGATCACAACTTCCTGTCCATCAGAAAGATATCTGATATCTACTGTGCCATATCCCAGCTGGGAAGCAATG--AGAACATGAAGAACACAGGTTTTGGATTTGGAACACAGAATTGCCTGGAAAACGAGCTCTATTGACTCTTAGCTAGATGGTCAAGTAGTTATATTAACTTCTTGGACCTGAGTTTTGACATCTAAAAAATGAGAC

a score=9531
s chr3            95259081 390 + 160039680 agcactcgg---gctcttacagcagcacagtgagggacgatggACTGTAGAGAATCCCGGAGGAGAGGGAGGCAAGAGGAGAGGGACCGAGGTACTCCAGAGTGAGGGGGAGTGGAG-----GTGAGTGAAGGTGTCCCTTGCCCCTTCCACTGGC-----TTGCTCTTACCTTCAAGTCCATGTAGATTGCACTGATTGCCACCTTGGTGCCCTGTCTGTAGACTGTCTTCTGGTCCTTTCTGAGCATCTGTTCAGTGGTCAGTCCTAGAAAATAGA-----------AGTCAATCAGGGCAC---TTGGCCTAACACCGCAAAGGTGAAGACGAGAAAAATGGGACAATAGTTTCTCT-TCAGGGCGATGAACAGGACCAATAACTGAAAATGTAATTATACAAAGGTTTACTTAA
s HiC_scaffold_1 140370495 398 - 233722169 AGCACTCTGCTGGCTGCTGCAGAGACATACTGCAAGATGACAGGCTGTC----------------AGGGTCACAGAAGAGGTGTTTCCCAGGTGAGCTAGAATGAGGGCCAACCTCACATCCATAACTCAAAATTTCCCT--CCCCGCCCACAGCCACACCCTGCTCTTACCACCAGATCCATATATACTGCACTAACGGCCACCTTGATGCCTTGTCTGTAGACAACCTTCTGGTCCTTTCTCAGCATTTGCTCAGTGGTCAAGCCTGGCAATCAGACATCAGACCAGGGTCAAATAGGGAACAAATGGTCCCAACACCAGCAGTGTG-AGATGAAGATAA-GGAACAGCATTGCCTCTCTTTGGGTGATGTATACTGGAGATCACTGAAAGTGTAACTGTGTGGTCAATTACTTAA

a score=12140
s chr3            95262163 239 + 160039680 CAAAGCTTGCCCACTGACTCTCTCATG----------GAA---AATATGACACATCATACCTGAGACGTCAAACTTGGCCTTCTGCAGGGAATCAAATATGTCCTTTCTTTTGGGCAGATCTGGGAAAAGGGCTTCCAGTTCTTCCACATATTTGCTGTCCTTTGGGGTTGCCTTCCCAATGTTGGTATCCATGTTGACACAGTCCAGGATGATGGTTCCTAT----AAGGGATAAGGCAGAGCAGGAGTCCTGTG
s HiC_scaffold_1 140371578 256 - 233722169 CAAAGCTTGGCCACCTACTTTCTCATGTGGAGGCAGGGAATTCAGCTTGCCAACTTATACCTGATACATCAAACTTTGCCTTTTGTAAGCAATCAAAGATCTCATCTCTGTCCGGCAGATCTGGGAAGAGGCTCTCCAGCTTTTCCACATACTTCTTGTCCTTTAGGGTTGCCTTTCCAATTTTAAGGTCCATGTTGACACAGTCCAGAATGATGGTTCCTGTGGAAAAAGGAAGTCGCAAAACTTAAATCCTGTG

a score=16673
s chr3            95263302 559 + 160039680 AACCATTTCCTGG---TGGAACTGCTATCAGAGATGTTTCCTGTTTCTTCAGTGAGTCCTCTTTCCTTTAAACATTGCTGCAAACGGGAACCACCAAGACCCG-TGCCCTCTGCTTCCCCTGTACTAA----CTCCAA----------CCCAGGCAGTGAAACAA-TGACCAGCTGCTGC---AGGAACCCTGGCCCTCTGGGGTGAG-TAAAC--TTCAAGAGTCACCGCCACCAGTGAGGCTGGAG---TCTAGACTTTCACCGCCCCCATTCCGGGATAAGGGCAA------AGGTCACAACCCAAACCTGATTCCTTACCATGCAGTAGGGCTGCAGTTTGTCTGTCCAAGGTCTCTGGTGCCCCCTGCAGGATTCTCTCTGTCACCAGGGTGGCACAGGACCCCACCAGCTCAACTGAAACGTGACAGGGAGGACAGTATTTCTGCTCAATTGGTCGGTGGTCCAGCACCTCTGCTACGGCCTCCTCCAGAGCTGCATCGCTTCTGGGGAGGGTGGTGGTTAACAGAAAACAGAAAGAGAAGCAGGTAAGAGCTCTCCAGCTG-CCCAAATGGATCTCCAACTCCCCAC
s HiC_scaffold_1 140371994 555 - 233722169 AACTCTTTCCGGGAGTGGGGGCTGGGATCAGATGC-TTTCCAGCTCCTTCTGTGA---------------AACAAGGCTGCCACTAGGAAGCTTTAAGGTCTGCTGCCCTGTGCTTCCTTTCCAACAAGTTTCTCCAATGTAATAACCCATAGGCCTTTAAACAAGTGCCTAAGTGTTCCCCAAAAGAATCTCATCCTTTGGTGGGAGCTGGACGGTTTGGAAAGCAT----GTGGGTTAGACTGGAAAAATCTAGACTT-CTCTGCTTTCCCT--------AGAGAAACTAGTTGGGTCCAACCCCAAAGTTG--CGCTCACCATGCAGGAGGGCTGCAGTCTCTCTATCCAGGATCTCTGGTGCCCCCTGCAGGATCCTCTCGGTCACCAGAGTGGCACAGGACCCCACCAGCTCAACCGAAACATGGCAGGGAGGACAATGTTTCTGATCAATGGGTCGATGGTCAATCACTTCTGCTACTGCCTCCTCCAAAGCTGCGTCACTTCTGTAGAAGGGG------AGttgcaggaagagaaagaaaca--taggGACATTGTGGCTGTTTCTAACCAATCTCCACCTCCCCGC

a score=6975
s chr3            95264870 449 + 160039680 GACTAGCAGGAGCCAGACATACTTAGACAAGAATCACACTCATGTTGCTTTTT-GGCAG--CCTTCTCTAGTCCTAAATTGGAAGTGGATTTATTATGGATGTACACATTTGTTGAACAGACATGCCTGGGATATTTATAGTCTACTAGAACATATTATCCCTGTATCT---TAAAGCAGCAAAAGTTCTGACATTAAAGGCAAATTTAAGTTATTTTGAACATTTTGAATAATTATTTAA---CTAT-------ATATTTTTGTTTCTTTATATCATAAACATCACATAACTAGAGAAGTGATACTATTTTTTTTTATTGGATATGACCCATCAATTATAGTTAGCCTCCgaggcaggtgg-----atttctgacttcagggct----------agactggaatacata---gtgatttagaggccagccaaggctgcatagtgaggccctatctcaCACGAGAAGCAAGCAAACAAACAAA
s HiC_scaffold_1 140375685 416 - 233722169 gattagCAAAAGCCAAACAGTCTTAGTCAAAGCTCATCCTCATGTTGCTTTTTTGGCAGGGTTTTTTCCAGTCCTAAATTAGGAGCAGAATTATTATAGTTATACACATTTGTTAAACAGACATGAATGAGCTAGGCACGG-----TGGTACAT----TCCCTAGACCCAAATAAGGTATTTATAGATCTTATGTGTGTTGCAGAT-------------AACACATTCCAAAGTCACTAAAAGTCTATGCAGGAAATACCTttgttaacttaaaaaaaaaaaa----------aaaaaaaaaaaacaat-------------------------agctgAAG-------CCGAGCATGGTGGcgtacacctataattccagtacttaggaggctggggcaggaacatttaactgtgagttcaaggccagcctgaactgcatagtgagagtctacctcaaac---acacacacacacacacaaa

a score=17563
s chr3            95265411 426 + 160039680 ACTTACTTGGGTAAAATATGGTGGTCAACAAGGATGAGGGTGAGCTGGCCAGCCTGGTGCAGGGCTAGGAGGTCAATCTCGTCCCGGAAGATCAGGGCTGGCTCTGGAATCTTAACCTCCTGGAGAAAGAAGACATTGTCCCCGCGCAGAGGAAGCTCAGAACGCTTTATATTTAAAACTGGTATAAAGATGTCTTCAGCTTCAGACGTCTGGTTACAGAATTGAAAAGAAGACATAATAAGGCTTAGGAAAATGCAAGAAAAAGTAACCCCCACCCTAACTCTG----------------------------ACCCTGAG-----GTTGGGTTCTGAGTTCTCTCCCTAATACACAAATGCAAAACAGAAGGCC---AAAGAAGACAtgaccttgggtaagttaccac--ttctcaaggccacaattatcaagcctatgaaaataaaaggatggggctggaga
s HiC_scaffold_1 140377522 454 - 233722169 ACTTACTTGGGTAAGACATGATGGTCGACCAGAATGAGGGTGAGCAAGCCAGCCTGGTGCAATGCATCAAGGTCAATCTCATCCCGGAAAATCAACAGGGTCTCTGGAATATGAACCCTCTGAAGGAAGAAGACATTGTCACCTCGCAGAGGTAGCTCAGAAcgttttatatttaaaactggTATAAAGACTTCCTCAGCTTCCGTTGTCTGGACAGGAAAGTAAAAAGAAGGTATCTCAAACTTTTGGAAGA--CGAGAAATAGTCAGTAGCAAGACTAggctggaggtgcagctcagtggcggTAGAGCACACACTAAGGATCTGTGAGGCCCACAGTTC-CATGCtagcac-------caaaaaataagagCAATAAAGGAGACATGATCTGAGGTAAGTCACCACCTTTGTCAAAGCTGCAACTATCTAgtccataaaaataaaagggtGAGGACAggga

a score=11411
s chr3            95268138 203 + 160039680 TTCAGTttagccaaggctaaacattggtaagtggcagagctgggccttgatccaaatcttttcactccaagggactgtttctcta--tactcaCCTTTGTTAGGTAGAAGGCCAAGGCGAGAGCAGACACCATGGAGTCTAAGTCGCAGGCTTCATTTCCCAGCACGACATGTAGAGGCCTGGAATCCTGGAGGGGAGGGAGAAC
s HiC_scaffold_1 140379048 196 - 233722169 TTTAACTGACCCTAGGCTAAATGCTGGTAAGTGGCACAGC---------ATCTAAATCTTTTCATCCTAAGAGATTTTATTCCTAGGTACTCACCTTTGTCAGATAAAAAGCCAAGGTGAGAGCCGACACCATGGAGTCCAAGTCACAGGCTTCATTTCCTAGTACCACGTGCAGAGGCCGAGActcctggagaggaagaagagc

a score=86378
s chr3            95280751 3905 + 160039680 [encoded data, 4383 characters]
s HiC_scaffold_1 140385915 3941 - 233722169 [encoded data, 4383 characters]

a score=28343
s chr3            95287600 857 + 160039680 acctctctGTCTTTTCCCTCATTCTCTATGATTTTCTCTTTCAGGGAAG---AAGCCAGCTG---CACCCAGT----------ATCTCCATCCTTTC---CAAGCCTGATAACCCATGTCCAGTCGGCCCCATCTGGTCACAGCAAGTCAGAGGTGGAATG----AGCTGAATCCTGTT-TATACACTCTGAGAAAAA-----------CTTAATCTGGAGCCAGAGTAGC--------------------CTACAC-AGTTCTCTTT----GACTTTTCTTGTTCCCTTTGCTCTGTAATTCAGTGACCTTGTAGGCCCAGTCTCTCTTCTACACACTAGAATAGCCATAGGCAAGGTCTCTGAGGTCTCAGAACACT-TCACT-CCCCTCAGCTGACTGT-ACCCACTATGGAACAACCTCAGACTGAGAACCCAGCCCCTAGTAAGGCCACTAGTGCAGAAACTGTTGAATCTGAAAACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCT--------GATGGAGCAGCTGGAGAACA---------GGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCTCCTGAAGCTAGCTCAAGTCCTCCTGGGCCAGCTTGTGGGACGTCACCTAAGGTAGAGACAGCAGAGGTGTGTTCCAGGCCACAGGAACTTCCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGATTTCTACTGTGTCAAGTGGATCCCCTGGAAGGGAGAACGGACCCCGATCATCACCCAGAGCACCAATGGTCCGTGTCCTCTTCTAGCCATCATGAACATCCTTTTTCTTCAGTGGAAGGTGAGTGCAGAGCGTG-----AGGTGCTGGGCAGGTAAGATGTCCACAGATGTGCCTTCCAA
s HiC_scaffold_1 140393583 914 - 233722169 ATCACTTTGTCTTTTCC-TCATTCTCTGTCATTATGTGTTTCAGTGAAGCTGAGTCCACCTGTGGCATTCAATCCCCACCCCCATCCCAGTCCTCCCTGTCAAGCCTGGAAGCCCAGCCTGTACCCATCCCATCT---CGAGGCAAGTTAGTGGTGGAGAGCTCAGCCTGAGTCCTTCTGTGTACATAGCGGGGAAAGGCGGGTGCTGCTTCTATCT-----CAGAGTGGCTGTGTAGACTGAGCCAACTTCCATACCACTTCACTTCCCAATCCTTTTCCAGGTCTCTCTGCTTTGCAACCCAATGACCTTGGTGGACAGGGCTCTGCTTTGTATATCAGGACTGGCTTAGGTAA--------AGGTC-AAGAACACTGTCAGGGACCCTTAGTTGACTCTCACCCACTATGGAACACGCTCAGCCTGAGCACCAAGTCCCTGATAAGCCCAGGAGTGCAGAAGAGGTCACCTGTGAAAACCACGAGGTCCCCTTGGGATCCGAGGAGCAGCCTCAGAACACGAATGCTAAAGATGCCAGTGGGGAGAGGGAGCAG--GGAGACCAAAGACAGCTGGAGCTGGGAGACCAAACTCTGCTCCCTGCCCAGGGCAGGGAGAACCTTGAGTGCCCCCCACCTGAAGCCCAGGTGCGTCCACCTGGGTCCCCCGGCGGGAAGCCACGAGAAGTAGAGACCATCGAGGCCTGCTGTGGGCCCCAGGAGCTTCCCCAGTGTCCCAGGGCCCGGCAGCCTGAGCCCGACTTCTACTGCGTGAAATGGATCCCCTGGAAGGGAGCACGGACGCCCATCATTATGCAGAGCACTAACGGCCCTTGCCCTCTGCTTGCCATCATGAACATCCTCTTTCTTCAGTGGAAGGTAAG---AGGGCGCTCAGACAGGCACTGGG-----AGGATACTGAGAGTTCTTCTTTCCAA

a score=5573
s chr3            95290995 195 + 160039680 ACATGTGACCACCCTTCCCTCTT-CAGGTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAGATGAGCTCCTGACACACCTTGGT-------------------------GAGTGATGTAGTAA------------------GGGGGAACCCTCAGGTGGAGCTCTGATGTGGGATTG---AGGTTAAGGACGAGTCCGAGTCTTTTCTGTAAAGCTGAAGTATAAAAAGCAAAGATCAA
s HiC_scaffold_1 140394656 238 - 233722169 ACACCTGCTCATCTTTTCTGCTTTCAGGTGAAGCTGCCCCCCCAAAAGGAAATGATCACATCAGAAGAGCTAATGGCCCACCTGGGTAAGACTGGCCACCTTGGGGCTCCCAGAGCTATCCATTCAGCCAGAAGCCCAGACTGTGGAGGGATCCCCATTGGGAGTGATGGTGTGG--TTGGAAAGGGTAAGG--GTTTGCAGGGCTTCTTTGCAAGGATGGACAACGAAAAGCAAagatcaa

a score=79858
s chr3            95291317 5011 + 160039680 [encoded data, 5850 characters]
s HiC_scaffold_1 140395457 4948 - 233722169 [encoded data, 5850 characters]

a score=16225
s chr3            95296323 1153 + 160039680 TTCTTAATTA-----CGTGAGATTTCCTGGGGA------------------GAAGATCCAG-------GAGTGGGGTGTGTTGGTAACTGTTAAGTGCAGTACTGGGGTAAAAACAGGATTCCTGTTGAATGGCTGAGCATACTTCAAAGGCACCTCAACTCCATGGCCTCCTCCTGATCCATGGCCTCCTCCACCCAGACTTTAACCAGGAAACAAAAAGATGGTGAACTGC-CAAAACAT---TTGACTCCCAGGGAGAT---GTTCTGGCCTTAGGAGGGATTGAGCAGGGCAGAgactgtcagagaactcccgttactcctctctagaatggagctgga------------agatgccagtctgagaagaggg-------------------------------------------------------------------------------------------aaatcc-----------------------aaaggaactcagaggtccagcctcgagaggaggccagggtgcatggtgttcCTTG------GGGTTCTTCCATGTTT--------------------------TCAACCAAATATGGGAATCTCAGCGGTTTCGAGTGTCGCGTCAGGGTGG--GTCAGGAAGGTCTCAGATATCTTCAGCTCTACACAGGGCCAGTAGTGCTGAACGACAATCCCCTCTGACTACATCCTGCAGGTAAGGGAATGAGTGTTAGAAAAACTCATTATTGCCAC--CTCCTCCACCAAACAGTCTAACCTCACCTCCTGCTGATACATAGCTCATCCTCAAGGAAAGATActctctctctctctctctctctctctctctcATGCCTGGAGTCCCACACTCAATGGAAGGAAAGGGGGTGGAGGGAAGAGCTAGGATGCTAGGGTAAGAAGTAGCTAAGTTTagtcaggcagtggtggcgcacgcctttaatcccagcacttgggaggcaga--------ggcaagcggatctctgggttcgaggtcagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtcttgaaGGGGAAAAAAATAGCTAGGTTTTACCTGAAGAGAAGAATAGAGAGACTTCCCAAATTTCTTCTTGAACTCAGCCCGAATGCTTAGAAGGTCACTCTCGCTTCGGGAGATAAGGACCCGCGTCAGCACTTGGAAATTAGGCTCAGTTTCCTAGTAAAGAAACACACTGGGTGGGGAGCATGTGGCAGGCAGCGAGGGGTATTCTCACTAAGAACAGAGGGTGGGCAGGAAGCAGAGGA-AGGAAGCAGAGGAAGGGTAGAAGAGGCA
s HiC_scaffold_1 140400859 1151 - 233722169 TTCTCAATTATTTTGCCTGAAATTTCCTGGGAAAAGAGGGTAATGATGTTAGGGGGGCCAGTCCCTCAGGGCAGAGTGTGTTGACAATTGT-------AGCCCTGGA-CAAACACAAGATTCCTGTTGGACAGCTAAGTGTCCATCAGAGGTGTGCCAGGTCGA-AGCCTCTTCCTGGTCCATGTCCTGTTCCACCCAAACTTTAG------AACACAACAGTAGTGAGGTTTGCAAAACAGAGGTTAAGTATCAGTGAGGTTCGGGCCAGGCTCTAAGAGGA--TGGGCAGAAC-GAAACTATCAAAGATACCCATTTCCACACACCCAAGACGGAGCAAGAGGACTCAGGTACAGacattattttgagatagggggAATTAAGgaatttatgtgtttatttttttggtactggggatcaaactcaggaccttgtgcttgccaggcaggcgcttatgctgctgagctaaatccccaggcttgAATTAAGGAATCTGAAAGAAACGCAGCGTCCTGATCTCAACAAGGAGCTGGTGCATGTGGTGCTGTGTGTGTGCAAGGTTATCC--TGTTTGGAGGCTGAGCTGGTCTCCTGCAGGCTCAGCCAAACA-AGGACTTACAGTT-TCTTAAATGTTGCTGTGAGGTGGAAGGCAAGGCGGTCTCAAAGGTCTTCAGCTCTGCACAGGGCTAGCAGGGCCTGCTGGCAATCTCCTTTCACTGTGTCCTACAGACAAGGGAGTCAGTGTTAGGAAGACACACCGT-GCCAGGGCTCTGGCA-----------------------TGCTGATGC------------------------------------------------CTCCCTCATGCC---GGTTCACAGCTCA-----------------------------------GCCAAGGGCAGGGTCAGC---GTCCAGTTAACCAA-----ACACATGC------TCCTCACAGGCAGGGCGTAGATGCTCAGCGGCAAGCGTCTGTCAGGGGTGGCGG------------------------CAAGGAGAG--------AAACTGAGGGCTCCTGGCT----------------------GTTTCACCTGGAGAGAAGAGTAGAGGGACTTCCCAAATTTCTTCTTGAACTCTGCTCGGATGCTTAGAAGGTCAATCTCACTTCGAGAGATAAGGATGCGCGTCAAGACTTGGTAATTGGGCTCAGTTTCCTGatagagaaaggaagagatgAGGGAATATTT---AGACAGTAAG----ATTTTCACTAGGAAT---GAGTCACTTGGAGGTTTAGCATAGGAAGCGGGGTCAAGGAGAAAGAAGTA

a score=45236
s chr3            95300123 3118 + 160039680 GGGCAGGGAAGGAGCAGAGCACCTCTTACCTGAAGGGCTTGGTGGAGTTTGTTAGCAAAGTACAGCGCTGTGTTTCTCAACATGGAAGCTATAGGCAAAGGTGGGAGGACAGAGAGCCATGTC-AGGGCCACAGCTTTCCGTCTCGGTAAAACCCCATACATCCTG-----AGCAGGTGCCTACCTAGGCTGATCAGAGCCAGCTGGGCATCTCCATGGAAACAGTTCCGGATAGCATCCTCCAGTTCCTGGCCAGTGCATCTCCGGTACTGATCAAACACTTTTGGTATGTGTGGGGAGTGGTTAGAGAGGTCAATTGGTA--TGTGGGACTATTACTTACCACAGAGAATGG------------TGACCCGCCAC----ACTCATCAGTAGATAGAGGAAGCTGGGTGGGGATATGGAAGCTTGGG--TACCTCGGATGAGGTGTTCAGGACTGCGTTGTGTAAGGAGCAGGACCCATTGCCCTGCTGTACTGGATTCTCCAGCCTGCTGAAGTGCCTGGGGAAGAGGAAGGGACCGGTGAGTGAGGACCATTGTAACCTGGAAGCCACAGTTAGGGTGTCCCCAAAAGTCTGTTGTGATGA--AGGAAATAGGGCTGAAGGTGAAAAAGGATAGtttaatcc--cagcattgggtg-gtagaggcagatggatctctgagttcaaggccaggctggtctaca---------gagtgagtt-ccaggacagccagggctacacacacacacaaaacaaaaACAAACAAACAAAAAACAAAAGGAAAAGAAAAAGAAAGGGGCTCTGCTCAGCTGCTCT---------------CACAAGGAACTAATCC---CTAAAGATAAGATCTAAG-GAGACTTACTTGATCCAGAGTCCACAAGAGGAGACT--------------------CTACCAGCAGAAGGCAGAAGAGGTTTGCAGTACAGA--TAGGTACATGGGGTCTGGACCCTAGGACATGATCAAGGAGGGAGTCTACAAAGTCTACATACA-AACTCTGAAG---------TCCTGCTCACCCGGACATCTTGTTCTTCCAAGTTGTAATCAATAATTCCAGAATAGCTCTCACGGTCCCCCTAAGAGGAGACACCGTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGAACTCTTGGA----AGGCCAGAG------------------TTTTGCTCAGACCCTGGCCTCTCCGAAGCTCTCCCTGTCTGTCACAGGACAACAGA------GCTCCCTCGTCTGAC-CCATGCGCAGCTGAGG--AACACAAATCCCTTTCAGGCCAAGCCT---CACCTTGCTCAGGGCCAGAAGCAGGTCCTGCAGGATACCATTGGTCTCAGTCCTGATATCTTCCTCAGCCTCCACCTGGAAGTCTGGGGGAGAGGCAG-AGCTTTTTGGTTCCT----GATTGTCTTGGGGTAGATAGCTCTGGGACTTGCCAAGCACCTGACCTATGG-ACCCTAATGGCCTCCTCTTTTTTTTTTTTTAAGATTTATGTTTTTATAAGTGTATGGAGCCAGTTGCCCA-----AGGAGGTTAGAAAAAGG--AACCAAGCAGCCAAGCAGCAGGAATCAGAGTTAGGAAATCCCAGAATATGAAGCAAGCTGATTAGGTCTTATCCTCTAATCAATGTCCAAGAAGTGATGTGGGCAGTGTATGAAGCAGAGAGTGATTGGGAATGGGGAGAACAGAAAAA-------------TGAAGACtgtagtatgtatg--tatgtatgtatgtatgtatgtatgtatatatgtatgtatgtatgtagtatgt-GCTGAAACCTTGGGTTCAATCCAGAAAAAAAAAAGGGGAAGAAGGAAGAGAGAAACAAAATGTCAGCcatgcttgcaagcccagcactggggggct--------------gagaatcatgaattcaCACTATCTCATCTACATGGATCTATG-CA---GTCAGGGGGGTGTGGGGTGGGGGTGGTGGGGGACAGAAAAAGGTGGTGTGGTGAGG-----AGAGGAGGGTGGGA-AAGGCTGTTTACAGATTAGTAGGTGAGGTTTGTGGCAGGCAGGGCCAGCATATCTTTAAAAAGGT-ACACC-----TATCCCCCAGGCTGCAACCTTGGGA--TGTGGTTTGA---------TGGTAGGGACAGCAAGGGGACTGTTATGGCGCCTAATGT---CATTACTGTGAAATTTGCC------------CTGGGGCTCCAGACTGAGTTAATCACTGTTTCTCCTCCTTTAATGATCACATGTGGCTCTATCCCCTGGGGAGACTGAGGCACTGGGGGGGGGGGG----GTTGTCCCCGA---------------CCTTCAGG---------GACTGTA-----GGAGAGTAG--TGGACTGTCCCACTCAGCTCTCGGGGACCCCTTG-------------CCCCATTGCATGCTTACCATGCTTATATACTGCCAGGCATGCCTGCAGTCCGGGCGCTGCTCGGGTGGCCAGGATTTCCAAGGCTACATCCTCAGCAGAACCAGAGGTCTGTAAGAAATTATGAGGCCACGTGACACTGAGCCTCCATGTCCTTAGCTCAGCAAGATGGTAGACAGTGCTGGAGAGCTGGCACTAGCCACTTCTCTGTCTAAGGGTCATCACAGGATCAAGGGGGCCTCTAGGCCTACTCTCTGCAGAGGTCAAGGCCAGTCAACTAACTGTGCTTCTTCCTCTCTCCGTTGGAGTTCTTGGACCCCAGACACCAGGGCAGTTGTCCTCTCCCGCTACCTTCAAGGCTGTCCTCAGTTCCTGGGCATCAAATTGGGCTGCAGGCTGTAGGAGAGCCACCACGATTTTCTCCAGATTGCCAGAGAGCGCTGCCTGCAAGGACTTCAATAGATCCTGCAG-AAGCGGACCCCAGACAGATAGAGATATAGGTCAAGG-----AAGGCCCCA-AAATCATGGGAAGCTTTGATTT-------TTTTTTTTTTAATCCCAGGTTTGACTCCCAAGTCCCTGACTAGCCAGGAGGGAGGAGCAGGATGTG---------GCTGGATCTCAAGTCCTCCAAGGGGTCCCCACCCTGTCCACAGCTCACAGGATGTCAGTGCTCACACCTGTTTGGTGCGCTCTTGAAAGGCTCGAGAAATGAGCTGTCTTTGCTCTCTGCTCCGATTGGTCAGTACATCCACAATGGTATCATAGTCCACACCTAAACCAAGAGAAAACCAGGTTGCAGCCACAGAGTTCACGATCATGA-ATTCCCAGCTCCTCAGGGAAGAGAATTAGGTCTAGGGAAGGG-GAGGGAGTACTGGGACTA-----TCTCACCCCAACTTCCATCTGTTCTCAAAGGAGATGATAAGAAAATGTCAGAA
s HiC_scaffold_1 140408787 3275 - 233722169 gggaggggaaggg--agtgggCTTCTCACCTGGAGGCCCTGGTGAAGTTTGTCAGCAAAGTACAGCGGCGTGTTCCTGACCACTGAGGCTgaaagcagagagggagggaaagagagccAGGACTAGGGCCTAAGATTCCCATCCCAGGAGAGACCCCTACTCCATGCCGTAGGTGGGCCCCTACCTAGAGTGAGCAGGGCCACCTGGGCATCTCCATGGAAACGGTCTCGCACAGCCTCCTCCAGCGCTTGCCCAGTGTGCCACTGGTACAGATCAAACACTT-----GCATGGGGGGAGTAGGTAGAAAGATGACTTGGTGGTTGCGGAAGTAGT---TGTCATAGAGAAAGGGTTTCCCTCCTACCTCCCTCCACCACAACTCATCATTATA----GCAAGCTGAG--GGGACGAGAAGGCCTGCGCATACCTCGCCTGAGGTGTTCTGGATTGCGCTGGGAGAAGATCTGGACCCATGGATCTTCCTTGCCAGGCCCTTCCCCCTGCTGTAGCACCTGGGATGGAGAGAGGAATC---------------------------AGCCATGGCTGGGATTTTCCCAGGA-TCCATCATCACCAtgaggaaat-----taaggatggtaaATGGGATTTTAACCTGTTAAC-TTGTGTGTGTGCGGGCACATGCA------GGTGTATGcatacacatgtgtacacatgtttatgtgtgtgtggctAAGAATACCAGCTCTGCCTTCACA----------------------------------------------------GCTCTATTC-TCTGCTTTGGAAAACTCTGGGTGCCCCAGGAATTAAATGATGCCCAGGACAGGTCTTGAGAGAGGGATGGCTGAT---GAGCTCCTGCGAGATGACTTACAGGCTCCTGGGCCATGCCTgcctggggtggggatggggagccCGT-TTACAGACCTGGGTGCACAG--CCTGGGCTTTGGGGGTTGGGCTTGGGTGTTGTAT------CTTACATGTGTGGCCTTGAAGAGGTGTAGGCCAAGCTCACCTTGACATCTTGCTCTGCCAGATTGTAGTCAGTGATGCCACAGTAGCTCTCACGACTGCCCTAAAAGGAGACACTGCTCAGGGGgcctcttcttttttcctctcctctcttttacTCTCTTCTCcactccttctttcctcttctctcctctctctctttctttctttcttgggcattattggggattgaacccagggcttcttcattgagctacatgcccagccattattattattattatttattttgagacagggtctctaaatCAGTAAATTACCCAGGGTgggctgaaacttgtgatcctcctgcctcagcatcccagaatgctgggattataggcttgaaCCACCAAGAGGCAGCCTTTTATCTCCAgatctcagcttcccaaagtccCCTTTTGTTTATCATAGGGTAGTGATCCTTTTGCTCTCTGACCTGATGCCCTGACCTGATGAGGGTAACTCCCATCCCTGGCAGGCTGGTCCTTCTCACCTTGGCCAGGGCCAGGAGCAGGTCCTGCAAGATGCTACTGGTCCCAGACTTGATGTCCTCCTCAGCTTCCACCTGGAAATCTGGGGTGGGGCCAGGAGCTCTCTGACTCCTCTGGAGCCTCCCCAGTGTAGACAGCCCCAGGACCTACCAAGTGCCTGACTCACGGTGTCCTGCCAGCCCTGCTGTCTCCTGCTC--------------------AGCATAGCAGGACAGCTGCCTATTCCCAGGATGTGAGGCCTAGGTCCACCATGCC-------------------ATTGAGAACATCTCACAGCTTGAGATGTGCTCATT--------CCCAGCACCAAATTGCCAGGCAG-GAGGTAGCCACTGT------TAGAGGGCACCCAGACAAGAGTGGAACAGGAAAGCCATACTGTGAGGTAAGAAAGATGGCCAGTATGGCCTCGAATCGATGACTGTCAGCAAGCAAAAAGG-ATGTGTGGAGGAGATGTGGAGCTGGGA----gagctggagagagagaaaagagaggggaaaagaaaaaa---aaacaggaggacA-----------CAGCTTAGTGATGGAGTGTTTGTCTAGCctgtgtgaaagtcctgggttc---------catcccca-----ccaTGGCAAATgacagaagggaggaaggggggACAGGCTGAGATCAGACAtcagaggaaaggggaggggccAAGATGAAGACCAGACAAAGCCAGTTACAAATTAGC-GGTGAGGCAGGTGCCAGCCAGGGGC----------CAGACAGATGACACCCTAACTTCCCCTCAGGCTGCACCCAGGGTACCTGCAGCTGGAGATCTGCCACGACAAGGATAGCAAGGGGGTTGGGAGGTGGTGCGGTGCGGGCATGTTTGGGACTTTTACAGGTCCAATGTCATTGGACCCCCAAACT-----AATCATTGTTTCTCATTCTTTAATGATCACACGAGGGTCT--CCTCCGGGGACACTGAGGcatggaaggggaagggaagagagaccCCAGAGGAAGCAAACTGGGCCAGTCAGGATTCCAGATGGCTGTATCTAGGGAGTGTGGAAGGGGCTGTCCTAC--AGCTCCCTGT--CCCCTAGTCACCCGAGGGGCCCCTGCAGTATTCTCACCACGTTTATAGGCTTGCAGGCACTCCTGCAGCCTGGGCGGAGCTCGGGTGGCAAGAATTTCCAAGGCTACATCCTTAGCAGGGCTTGAGGCCTACGGGAAATGGGGAGCC------ACTCTGAG------------------------ATG-------------------TGCCATGGGCCACTTCACTT-----------------GATCTGGGAGGGTTACAAG------------------------------------TGCCCTCCTGCTTCCCTCAGT----GTCCCTGATTCCTGGATGCCCCCGCATGGAACCTGTTCTG-TACCTTTAAGGCTGTCCTCAGTTCCTGGGCGTCAGACTGGGCCAAAGGCTGCAGCAGGGCCACCACAATCCTCTCCAGGTTTCCAGAGAGAGCCGCCTGCAGGGACTTCAGCAGGTCCTACGGTAAATTGTCCCCACAGCAGGGGCAAGAGGGCTCCAGGGGTCAGGGGCATCAGGAAGTGTGGGGGGCTTGGGATTTGGCTGGTTTTTTATCTCATCTTAGTT--------------------------GGGGGCAGGGGCTGGCCTCGGCCGCACTTGCTGTACCCCAAACCCTGCTAGGACT-CTCACCCTGGACTCTGCTCCGGGGA--TCAGCG-TCTCACCTGCTGGGTGCGCTCCCAGAAAGCTCGGGAAAGGAGCTGCCTCTGCTCTCTGCTGCGATTGGTCAGCACTTCAATGATGGCACTGTGGTCTACACCTGAGCCAGGGGAAGGTGGGAATGGAGCCAGGGCCCTCA----CATGAGACCCTCTGCTCCATGGGAGAGACAACAGCATCTAGGGAAGGGCCAGGAAGGGAAGGAGCTAGGGTTCCTCACCCCTGTTTacattttctctaaaaaaaagatgcaaataaaTGTCAAAA

a score=46596
s chr3            95305835 2473 + 160039680 CCTAAACAACCAGGGCATGAGCTTACCTTGGCCTGCGATAGCCTTCAGCAGTCTTTGTACATCCTTGTCCACACTGAAACTCAAGAACGTCCTGAGGGTGCCCAGGGTCCCCCAGGCTGCGGTCTGTAAGAGCAGG-----------AGATCATGGCGTCATGAGG----AGTGAGTCTACCCACCTCTTCCT--TCCACTTTGTTC----ATTTGTTGGGTTTgtgcatgggagatcagagaacaaccaaggttatctccttccatttgggtcctagggattgatctctgctcatcaag-gcttttttacccagc---------tgagctatctctccACAGCCAT------------------TTC-----------------CACTTTCCTGTTCCCCCAGC-------------------------------ATCTTCTGGCCTTTAAGTTGACACATTAAAATT-TATTGTT------------------ggggttggagatgtg---------gctcag------------------------tgggagagcactaacct---------------ggcaagtgtggcccagagaattaaatc---------------------------accaatactacTGAGAACATAAA----------------------TACATTTCTGAAGTCCCAACAGCCCATACCTTGTCGGCAAGACCCAGGGAGCTGAGGATCTCCTGAGTCAGAGATGTTCCCAGTGGTCCACAGCTCGCAGACATGGTGCAGCTGGCTTCCCTGAGGAAGGAAACAGGAGTTAG---------CTGAGGGGAATGTTCCACTTGGGTATGTTGATGGCCTCTTATCTGGGGCCTGGACTT---TCTCAACGCATTCCTTTCCTGTGTTGCAGAAAATA-AACAGACAAATAAATAATAAGTTACAGAACTAGTGCACAGGCTC---------AAGAGAAGAGGAAGGCGAGAGGAAGGACTTAGCTTCTGGCTTTCACCTTCTTCTAGTAAGCCAAGATGGGCTAGGGAGGCTGTAGGAACCAGCACTCACCAACCAGTTCCCCCCACTCCAGGTC----------CCCTGAACCCTTAGTCTGAGGTGATGCCC---TCTGAGGCTCAAGTTCCTCCTCCCTTCCCTGGCCTGGCTCTTC--AGGCAGC-TGGGGTG---AGGTGACAATGATGGGAACAGG---TGCAAGA-----------CAGCTCCTTATCACATTCTCTCCCCCACAGGTAACCTGCAAATC----------AGCTTCCTACCTGTCTGCCCCTCCCAGACACCCCCGCCCCCATCCTGGGGGTGGGGGAATCTCAGATGGGATCCTTTGGTCAGCAG--GTGTAATCTGGGCTG---------------TCCTTGTG----------CTTGGACAGA------AGCTAGCAGCTGTCATGCTGGACAT--ACCCACTTCTCCCACC--------ATCAGTGAGTTCTCCCGTCCCCAGATGAGGGCTCAGT---TCCAGAACTTACCTGAAAGGTGCTGAAAATAAGATGGGTGTTATG----GTTCAGCGTCGTGAAGGCACCAGCTCCGGAGTAGCCGGGCAGAGAAGAGGAGGAGTGGACAGCCTAGGTTGAGCAGTCAGTCAGATGACCTCTCTCTTGAAGACCAGCCCAGCTGTTGTCTCCAACTCTGGCCCCTCCCAGACGTGGGAGAGGACCAGGCTGTACAGGGTCTACAAGCAAACAAACACCTCCCTGCCTAGCATCTCTCCTCCCAGGAACTGGCCCTGAACCCACGCAAGTGAACT--CTCAACCTCTCAG--CCCAGC------CCAGGACACAGAAGGCTTTGTGCGCTGCCTTCCCTGTGGGGCCAGGTTGGGACCACAGACACCTTGTCTCTTGAGTCCTACTTCTGACCTGGCTCTACCACTGGCTCCAGCTCCCTGGGGGTAAAAAGGGAGGGGGGGGGTTAAGGGGAATGCAGGTCAGACAGGCTCCAGGCTGATTTCAAGGTTGATAGAGAAGAACCTGTTGGGACACATACCATCAGGGCACCCCAGCCTGCACCCCACGGGGGGTCCTGGCCCATAAGCTCCAGTGAtttttttttttttttttttttttttttttGCCTTAGGAAAGTCAGCCAGCATGGGTGGG------GAGGCAAGAGGACTGTTTATATCTGTGAGGAGGAAGGGCACAGGTAATCAGGGGTTGGAAAAGACC--TAGAGTCAAAAGAGAAAAATGCAGAGAGGGTGTTTCCCTGCAGACCGGTTACAGCTCGAAACCCTGGGAGCACTGTACTCCCAAAGCAGCCAGCAAATGGAAGAGGC------TCCTGGGGCCTGGATTTCTCAGAC---TCCTGTCGCCTTTTAGCAGTCAATGTCCCCTGACTGCTTGGGTTGCAAGTGATACAATCCCAACAGCAGAGCCTGAGGCTGTCA--GCACAGAGCAGCAGGTGCACAGTCCCTCTCAGCCACAGGGACCCCAGGCAGCTGAGAAAGCATCGGGGCTGGCTCCATAGGGTTTGGGGAGCAATCTTTTTCCTGTCTCCGGACCTCTGTAACTC------TCTAAATCCAGA---TCTCCTTGATCTCCAAGAACCCTGGAAGGAGAGTGTTACAGCATTATCCACTGCTGTCCTGCA--------AACAAGTTTGGGG------------------ACACTGGGAATAAAGGCCTCCATTGTG-GCAACCATATTCTGAATTTCTTCCTCACTAAAGTGGAAAA---CATATTCCAGTTTTAAAACCAGAGGACCCATGATCAGTCTCTAAtt
s HiC_scaffold_1 140413664 2637 - 233722169 CCCAAGTACAGAGGGAAGAGGCTTACCTTGGCCTGTTATGGCTCTCAGTAGCTTCTGGACATCCTTGTCCACACTGAAGCTCAAGAAGGTCCTGAGAGTGCCCAGGGTCCCCCATGCTGCAGTCTATAAAAGCAGATACGATTAGGAAGGGCCTGCCACCCCCAGTGCCCAGCTAGGccactttccttttcttattctccCATGTTCTCACAGTCTCAGAGTAGATGCATAAAAAATga----------------atct---------tggg--ctggggatttagctcagtggcttaagcgcctgcctggcaagcgcaaggtcatgagttcgatccccggcaccaaaaaaaaaaaaaaaaaagattcttatcTGGGGgtgatggcacacatctataatcccagctacttgggagactgaggcaggaggatctgcaaTTTGAGGGCAATTtgggcaacataatgagaccctatttcTAAAAACAGTATCAGATCTGGGaatagtgatgcacacctgtaatctcagcactctggaggtgaggcaggagtttgaggcagc-ctAGGCTAtaaaataagttcaaggccagcctgaacagcatagtgaaaccttgtctcaaaaacataacaacaaacaaacaaatactaatgacaacaaaaaactcaaaaaacaaaatccaaacttgATCCCTAAAATCCCAGCAGCTCCTACCTTGTTGGCAAGGCCCAGGTGGCTGAGGATTTCCTGCGTTAGTGATGGCCCCATCTCTCCACGGCTCACAGACATGGTTCAGCAAGCTGGCTTAGGCAGGAAGGCAAGAGTGGGAGACAGAGCCCAGGCAGGACCCCCAACCC-------CCAGTGTCCCTCAGCACTGGGCTTAAACTTCACTGCCAATTCTTTCCCTTGTTGTGttacagacaaaacaaaacaaaacaaaacaccaaaaaactaaGCTGCTCAGTGGGCTTGGGAACATGAACAGAGGATAAGAGCAAAGAGAAGGGGAAAGTTTCCCCTTGGCATCCCCTTCACTAAGGTGAGGGTCGACCAGGGAGACCCTTAGAAC-AGCACCAACCAAACCCTTCCTA--ACTCCAAGCTGAATGCAAGTTCCTCAGCCCTGGGTCTGAGATTATGTCCCCTTCTGAGGTCCACAT-------------CCTGGCAGGATTCTCCTGGGGCTGTGTGGGGTGTTTAGGTGCCACGGCCAAGTCCAGGGAGTGGGAGATGCCCCAACTGCAGCTCCCC--CAGGTCCAGCTCTGCTAAGGCAGCCC-CAAGCCCTGCCCGCAGAGCGTACCTTCTATTTGCCCTTCCCCA---------------------------GGGAACCTCAG-TGGGCTCCTC-AGTCAGCAGCAGTGAGGTCTGAGCTGATGTGAGAATCTGTGTCCTTGTGGACACAGGCACCTGGGCAAGTGAGAGAGCAGGCAGTGtcaaagcaggaaaataaaacattcttccCGCCTGCAAGCAATCAGTGA---TGCCCCTCCCCAGCTGACAACCCAGGAGATCCGG--CTTACCC-AGAGGTGCTGAAGGTGTGGCAGGCGTTGTGCCGGGTGGACTTTTGTGTGGGCACCAGCTCCTGTGCAGCCTGGTAGAGGAGAGGGGGTGTGGGCAGCATAGGCAGGGCAGCCAGTCAGATGGCCTCTCT--TGAAGACCAACCCAGCTGTTGTCTTGGGCCCTGGCCCCTCCCAGTCGGGGGAGAGAACTAGGCTGTGCCAGGTGCCC---CATGTGGACACCTCCTTGCCTAGCATCTCTCCTCC-GGAAGCTAAGCAGGAACCCATGCAAGTGAACTTGCTCAGCCTGGTAGTGCCCAGCAGGGGACATGGACACAGGAGGCTTTGTATGCTGTGTTCCCTGGAGGGCCACGT-AGGCCCGCAGAGACCCAGTTTCT-AAGTCCAGCTTCTGACCTGGCTCTGCCACTGGCTCCAGCTCCCCAGGGG------------------------------GCAGGTCAGACGGGCTCTGGGCTGATTTCAAGGTTGATAGAGAAAAACCTGTTGGGGCACATACCAACAGGGCACCCCAGCCTGCATCCCAGAAGGGGTCCCAGCCCAGAAACTCC-------------------------CTGGCCACAGCCTGACAAAAGCCAGCCAGCCTAGGAGAGCCAGGCAGGGCAGGATGTCTAGTCa-------gagaagaaaaggggaaggTATGCAGGGGTGGGATTGGATCAGCAGAGTTGAGAG---AAAATGCTCAGGGAA---TTTCCTCAGGACT--------------------GTATCACTGTGCTCCCAAGGCAACCACC---TGGGAGAAGCAGGTGGTTTTTGGTCCCAGTTTTCTAAAACAATTTCCACTGCCTTTTGGCTGCCAAGGTGCTCTGGCTGCTC-TGCAGCAGGTGATGCAACCCCAACATCTG-GTCGCAGGCTGTCAGTGCACAGAGCAGCAGATGAACCGTCCCT-----------GAGCAGCTAGCTGCTCTAAACTCACCGA---TAGCTCTCATGGGCCTGGGAGGAggtattttttgtgtgtgcct-CCTCTGAGGTTTGATGGATCTGAGTACAGaaaccttcccttctcttc---------------------------cctccccccctcctctcctccaccATTTTGACCCAGTCCAGGAGGGCCCCTGTGGCACTTTACACCACAAAGGGAGATATCCATGGCGCGCATCACTGCACCCCACTTCTCTCCTGTGAAAATGGAAGAAATCAAGCACCAGTTTTAGACCTAGAGaatgtgagttcaatctccagtt

a score=13814
s chr3            95312638 385 + 160039680 TTAGGTTGCATGTGTTGGCCTTCCGT-GGAGCTGGTTCAAATAGCTAAACCTAGCCCCGTGGCCTGTCCGATGCCTTGGGACACCTCAGCAGTTTATTCACAGGAAGTGAGTCAC-CACAAGCAGGGCACACTTG----GGGCATTGTGGGCATGGCAATGCCAA-CTGAGGGTGGAGGATGGGTTAGAAAGGCAGGCGTGGTGATTCTAATCTCCTGGTCCAGCCAGGGAGAGTGTGTGGGGAACAGCACCCC----AGTGCTGGCGGAGGCCAGGGTTCT-----------CCTCCTTCCATTTACTCTTTT---------------GTATACCTTCTTATCTCCATTTCTCAGGCCCTCACTCTCCGATATCCTGCCTCTGCCCACAAAA------CTCCCCACTGCTTTCTGTTTTCTCTTTCT
s HiC_scaffold_1 140419188 405 - 233722169 TTGAGTGTCAGGTGTTCGCCTGCCTTAGGAGCCTGCTGAGACCTCTGGGTCTGGC----TGGCCTGTCCTCTGCCTTGGGACACCTCAGCAACCCATACAAAGGAAGTGAGTCACGCAAGGGCAAGGCAGGCTGGCCCTGGGCATGGTGGGCGTGGCCATGCCAGcctggaggtgggggaggggtcAGAAGGGCA------GTGATCAGAATCTCTTGGTCCAGCCTGGGACGGTGTGTGG-----AGCACCCCTCTTGATGCTGGCTGAGAATGAGTTTCTGAGTTTCTGCCACTCCATCCAGGGTCTCCTTTATCTCCTAGCCAAGGGTATActctcttatctttatttctcagGCCCTCATTATTCAA-------CTTCTGCCC-CAAAACTTCCCCTCCTCACtgctatctttttttccttttt

a score=228455
s chr3            95317140 9213 + 160039680 [encoded data, 10688 characters]
s HiC_scaffold_1 140422431 9556 - 233722169 [encoded data, 10688 characters]

a score=4544
s chr3            95326316 286 + 160039680 GTTTCTTAGGCTTCTTTTGTGTGCTTAAGCGGAGAGGAAGGCTTAAAGGATG---AAAAAGCAAGCACTTACACTGGCATCTTGTTTCGGTTCTCAGGGTCCTGGAAAGGAACAAGGGAAAGGTTAAAGATCATTTCATGGTCCAAGGTAA-------------------------CAGAAGATCTCCAAAGACAGCATTACCATAAGTCAGCAAGAG---ACACACTGAAGGT-GGTGATGTAGGGAAATCATGTTATAACTTGTT--AACATTCACAAT--CAACAGTATACTCTCCTGGCAAGGGCCTTTAATCTTTCT
s HiC_scaffold_1 140432092 304 - 233722169 GCTTCTTAGGCTT---TCACAGGCTTTAGAGAAGA--CAGATTTGGAAGTAGTTCAAAAGAAAAGCACTTACACTGACATCTTGTTTCCGTCATCAGGGTCCTACAAAAAAGCAAGCGCAGCATTAA--GTGCTTTAGTGGGCCACTGTAATGAGTCTAACaattagattttatttcaaatgacCTCTAAGG-------TAACATTGACCAGTGGGAGGTCACTAGCTAAAGCCAGACAGGGTCAGGAAATCACTT--TGACTTGATGGAACAGTCATATTCCCATCTCTATAAACTCTtgtca--ggcttttttttttttt

a score=60751
s chr3            95327195 1617 + 160039680 CAAAGTTCTTACCTCTTTTTTAGGCTGCTTATTGTCTCCTTCATCCTTGAAGCTCAATCCTGAGGTAGAGGCCCTTTCAGCCTCTCCCCGGCCTCCCCCAGCACGGCCATCTCCACCTTCACTAGTCTTGAAGGAAGAACGGCTGTCAGAGTCAGCAAATCCACCTTCACTGACACTATTGCAACTCAACCACGAGGCCACCTTGTTCTTGGGTGTCTCTTCAGAGGAAGGTGGATTGCAGCCCCCTACAGATACTGAGGAAGGGATAGGAACATGTGGAGGCCCGAGGTCTGGGGGGCGGGAGTCCTTGGAAGTCATCTCAGACAATTCATTCTCCTTTTGACCCCGAGTCTGCCTCCGGGTAGCATAGCTACGCCACACTGAACTGGTGCTGAAGTCCTCATCCTTACAGAAGTTATCATCAGAGCTGTCATCATTGGATTCTTCAGGGTCCTCTGAACCGCTGTTGCCATCTTCCTGGTCCTTCATATCTACCCCACTGCTGTCAGAGGAAGTGGGGACATCACTCTCATATCCTTCCTTGAAGTTCTCCACACTTTCAATGTGGTCCAGATTTGCAAAGTACTCATCACCCATCTCCAGGCCTTCTTTGTCTGCAAAGTCATCTGTCAGGATTTTGCCTGAGAATCAAGAGAATTGATGGTCTTC----------------------------ATCAGTACTACACCCACCAGCAGGGTAAATCT----ATTATATGCTTAC------TTTGCCACCTTTGCCTCTGA----------------------CATTAAGTCAATGT--CACTGCAGCT---------------------------TGTTGCTTTGCCCTTCCCAATTTTTT----TTTTTCTTTTTTCTTTTGTTTACCT--------------------------------CCTTGGTACTTCCTGGGTTAAAAT--ATCTCTCG-----GAGAAAATAATACA-------ATTAAATGATGTCTCTCACTGAAAGAAACATCAATAGCCAAAATCTGATTCCCTTCTACTGTT-----TAAGAAGTACCTTTGCCCCTCTCTGGTCCTACCTATTCAGGTATATATCACTTATCATGTCCTTTATAGAAGAGATTCCCACCTCCTCTTATTCCCAGTTCAACTGTCAAACACTTTATGCATCCATCCATCCTTTCttttttttaatgttagggagtg-atccagcacctcctgaaaactaagcatgcattgtt--ctcctgagctacatttc-cactccTCAAACACTGTTTTGTTTTGttttttttttgtgaggtaaaatctaactctgtagcccaggttatctcctactcttaaagttttctgttttcatcttctgagtgcttggattatagacatgtgctaccatacccACTAACACTTTGCTATGTTCAACTTTTCCTTGACCTTCCATGTCCCAAACCTCATAGGGTAAAACCCCTTTTTTAATCACTAACCTGCATAAATGCAGACAAAAGAGCCTTTGGCAATATCATCCAAGCAGCGGATACCCCAGCCCTTGTTCTGTGTCTTAAACAGCTGTAGTCGAACCTGCAGACCATGCTGCACCAACCGATTTGTGCACATGTTTGGGTCACAATTGCAGCGTTTGTTACACTCATAAACCCT--GGGAGGTTAGAATACAGTCA---ATGACACAGTTACTGATAGACT-TAAATCTCTAACACATGTCACAAGCAAAGATCATCAAGTAGGTAGTGACCC
s HiC_scaffold_1 140433669 1589 - 233722169 cacactacTTACCTCTTTTTTAGCCTGCTTGCTGTCGCCCTCATCCTTGATTCCCAATCCTGAGGCAGAGGTCTTCTCAGCCTCCCCTCGGCCTCCCGCAGCCCGGCCCTCACCACCCTCACTTGTCTTAAAGGATGAGCGGCTGTCAGAGTCAGCAAAACCACCTTCGCTGACACTATTGCAGCTCAACCAGGAGGCCACCTTGTTCTTGGGTGTCTCTTCAGAGGAAGGTGGATTGCAGCCCCCTACAGGGATTGCGGGAGGAAGAGGAATGTGTGGTGGCCCAAGGTCTGGGGGGCGAGAATCTTTGGAAGCCACCTCCGACAGTCCATTCTCCTTTTGGCCCCGGGTCTGTCTCCGAGTGGCATAGCTGCGCCACACTGAGCTGGTGCTGAAATCTTCATCCTTACAGAAATTATCATCTGAGCTATCATCATTGGACTCTTCAGCATCCTCTGTACCACTATTGCCATCTTCCTGGTCTTTCAAGTCCACACCACTGCTGTCAGAGGAACAGGGAACGTCACTCTCATATCCTTCCTTGAAGTTCTCCACGCTTTCAATATGGTCCAAATTTGCAAAGTACTCATCACCCATTTCCAGGCCCTCCTTGTCTGCAAAGTCATCGGTCAGGATTTTacctgagaaagaaaagaattaaagaccTTCTAGAGTTAtgaggagctttttttttttaatcggtacca-----------gggattgaactcacaactacctgtttgcaagaaggcaggcgcttatgccactgagctaaatccccagcctgaggagCTTTAAATATATGTGCTActgaagctgaggtgggaggattgttgtgagttcaatgctgGCCTGGGCTACTTAGTACTTTAAGGTCAACCTGAACCTTAAGGTTGACCTTAAGACGCTAAGATCAACCAGAGATAGTGGGATCCTAtctctgaatgaatgaatatcaaTCTCTTGAGTGCAAGAAAATGACACGAGGAGTCAGCAATCATTGTCTCCTCTTAAAGGG-----CAGTGCtgatgatttcacccttttttaTCCTTGTCTGTATGAAGCA-CTCTGTCCCTTTAGGGTCATTCCAGCTAGG---CACATCAGTCATCATGTTATGCAAAGAGGGGATCCCTAACAACTCTTATTCCTGGTTCAAACATcaagcattttattc---------tttttaaaattttgtggtaTGGGGAAGTGAACCCAAGATTTGCTT---ACTATACATGTAGTACTTATTAATGAGCTACATCCCTCAGCCATGAAGCACTTTTTTCTT---------------------------------------CAAACTGTC-----------------TCTGATTCAATCCTCCA-----------------------------------------------------------------------CCACATCCCAA-----------------CCTTTATCCCATTACCAACCTgcataaatacacacaaaagagCCTTTCGCAATGTCGTCCAAGCAGCGGATACCCCAGCCTTTGTTCTGGGTCTTAAATAGCTGTAGCCGGACCTGTAGCCCATGCTGCACCAACCGGTTTGTGCACATGTTTGGGTCACATTTGCACCGTTTGTTACATTCATATACCCTACAGGAAGTTGGAATAAAATCAATCATGATAAGATCAGTAAAGCACTAGAAAGCCATAAAACGTT------ACTAAGGTTGAAAATTAGGTAGTTATCC

a score=11006
s chr3            95337085 216 + 160039680 CTCTTGCAAACAAAAAAAACAACAATGTACTTCTCTGAGGACATCTCCAAACTGAATACTTACCCTGTGGGCAGACACTCTTCTAGTCTTTTATACTGGTAGCCAGAGTTAGGGTTGACTTGGCCCCCTGGGGTACAGGCTGTGGCCTGGATAGTTAGCTGGTGGCAGGCACATTTGGATCTGCA-GAGAGAAAAGGGTGACTAGAGTTGTGGTTTT
s HiC_scaffold_1 140446673 208 - 233722169 ctcctttaaaaaaaaaaaaaaaa--------tctctgaagtgGCCTTATCCCTGATTACTCACCCTGTAGGTAAACACTCTTCAAGTCTCTTGTACTGGTAGCCAGAATTAGGGTTGATTTGGCCTCCTGGAGTGCAGGCTGTAGCTTGGATAGTTAACTGGTGGCAGGCACACTTGGATCTGTACAAGACACAACAGT-ACAAGAGCTAGAGCTTT

a score=88967
s chr3            95338220 3336 + 160039680 GAACTCTAGCTGAAAGAGGAGGTAAAGGAAAACAGGGAAAGCAATACAAATAAAAAA------GAAAAGAAAAGCAACTGTAATAAACCTGAAGGCAGAGACAGCAATGCCTGTACACCCCACCAACTCACTTATCCCGACACCCATCCTTGCAGTCACAGCCAACCAGAAATTCAGGGCCTGTGTTAATGAAAACACCCTTGCCAGGAATGCGTTCCTTGCTGTAGGCCACCTGGGGTGGGGGAGTTGTGTCAATCTCATTAACACAGGACAGGGGAACATCTTCCTTGCCATAGGTGATGTCCAAAATATAGTAAAAAGGCTTAAAGGGTTGAAACTTTCTGTCAACAAGAACATATGGATCCAAACAGAACATCTCCAGGAACAGAAAGTCACAGCCAGTCTCAAAAAGGTAGCGCTCTATCTCCTGCATCGTCCGAAGGCAGAGACCACAGGGTGTCTTATAGATTACATGAAAGCCCATTTTGCGGTTAACTCTGCGCCGTGCTGTCATCCTCCGGAAGTCATACAGAAGTGGAACTAATAGAGGGTTCTTGCCCCGATACTGTTCGTTTCTCATGGGTCTGATCCGGGACAAACAAGTGTAACTGCAGACATGAGGTAAATAGAAAAGCTTCTCCATGGGGGCTCGGTAGGAGGGCTCAGCTGGTGCCCGCTCTAACATGCCATGGAAGGCTGGAGGAGCTAGAGGCCCTGGAGGAGCTGGAGGCCCTGGAGGGGTTGGAGGCCCTGGTGGGACTGGAGGGACTGGAGGGGCTGCAGATGCTGGGGTAGATGTTACTGAGGCCAAAGGTGACCTGCAAATGAAAAGCAAGATATGAGATCAGAAGGTCACAA-GCCTATCTGCTGTACAGTTTCCCCTCCCCCCAGCTAAGCCATTTCCCTCATCTTTCATACAGTTCttttttcttttttaaagatttattaatttatttcttatatagtgagtataccttcctgtcttcagacataccagaagagggcatcagatctcattacagatggttgtgagccaccatgtggttgctgggaactgaactcatgacctctagaagagcagtcagtgctcttaactgctgagccatctctccagaccTCATATAGTTTTTCTGCtttgttgtttgagacaaagcctcatgtagcctaggctatcctgcggcttccaatcctctgctctgtcctcccaacaactgagattacagc----------------------cagctgtgcTCTGGATGTTGAAG-------AATAATGTCAG--ATTCTTTGCCTTACCAAACAAGCCTGGACAACAAGCAATACAATGCTACTTACTCCCTGTTGACTCTTCAGACAGGTTGCCTCTCTAGCTCAACAGGGTACTGCTCCCTAATGTAT-TCTTTGTTATGGAAGTAGAATCTAGTGTTCTACCAAAGGTTCGAA-----GCATCCT-------TGCCATCTCCTAAGAGTCAAGGAAAAGGCCCAGTGGTGTCTCCTTTCTGTTGAAGCAATGATGATTTTACTATGATCAAGAAGTTTTGGCAAATAACTTTCTTGTAACAGTATGTTTCTTAGATATGGAATTTCTAATTTAACTATCTTATTA---CCAGCTTCTCA-----GAAGCTGCCTTTTCAAGTCCAAGTTTCTCACTAACATAACTTTAAAATAAAGGTCCTTGGAGTCCA---------------------------------TGTTGTTAAGCTGCC--CAGTGTCTGAGGTTGTCTTACCGATATGTCTGGTTTATCCCAAGTTTCCCAGCAGACACATTTTCACTGAGTGTGGATGAAGTAGGGGAGGAATGGCCGGAGCCCACAGATCCTGGTCGGAATGATGTGCTCTTCTTGGCTACTTGTTTCCGTGATTGTGCAAGTTGGCTTTCTAAGCTTCTAGGGAGATT---AGGAGACCATATAGTAAGGCTTCAGAAGGTACTGGTGGTAAAAAAAATAGAATAACTGGAAGTAAAAATAATGATGAGCACTTACTCAGTGTCAGCTGCTTGGGGGGAAAGAGGAGGTATAGGAAGTGGGGCCGGTGGAGCTATAGGCTGTAGGGGCTCCATGGGCTTAAACTGGATTCCAGTACCAGTTAGATCCTGTGTATACTGAACAACAGGACCTTTGCTCCTCACAGCACCTACAGGAAAAACAAACGAAAACTGACTGCTGAGAGGATGACAGATGTGCCAGATATTCTTATGCATATACACTATCAACT--AATGTAATATAAAATGCAGGAAATGgccaggcggtgattgtgcatgccattagtcccagcact-tgaaatgtagaagtaggtggatttctgtgagtgcaaggccagcctaaactacagagtgaataccaggccagccagtgctacgcagagaaaccccgtctcaaaaaaaAACAACAAAAAGAAAACCCAATCCAAATGAGAACAAGAAGAATGCAGCAAATGTAATATGAAGATGGCTTAGTGAcacaagtataagaacccaaattcaaatctatagaacctatgtaaagccaggcgcc-gcagcgtgtgtctgtaaccgcagtgcttctgtagggaaataggagggagaacagagcttctccagtgcagggaacctag---cctaACACATACACAATGAACAAGGAAGGTTAATTCTAAAGCTGAGATGGTCCTCTGACT---ACACAAGCACATTAGTATGAGTATGCCTGTATTCATATACAGAAGTGGCAAATGACACATTTTCTAAGTGTTAACCTTTTTTGTTTTTATTATTTATACCAATAAGGGGATATACTAGTAAACACTGGTTTTGGAAAGACtttgttgttttggggcatcgtcacatgtaat-----catgactggcctcaaactcactaagtagccaaggatggtcttgaatcccagatattcctacttctgccttcca--agtgctgg-------aactgattacatgtgtgcatca-aaatgtccggctATGTGTGGATATTTAGAAGAAATTTAAAAAA------------------CACAGCAATGTGG--------------------------------------------------------AGGCAGCTCCACAAAGCCATCAACACTAATGAAAATATTTTAGA---CATCTATCTTGATCCAGAGAGTTAGTGGTATTGCTCTGGTAAATAAAAGGACAGCTGCAATACATAATTTTCTGTGCTAGTCTACTCTGTCTCTTCCCTTCCCTAGCTATCTTTTAGGACATACATACCCATATTAGGACGGGTTCTGAGTTGCCCCCCTTGCTTCTTCTCCATTGCAGAGGCTGAGGATGTCTTCATACTAAACATAGGTTCCAGGCGTGTAGAGCCTCGATATATCCACTCACATCTTTTGTCATCCTGGGAGGCAGGAGCAAAGGG-AGGGAGAAAAGCAGGTTCAGGATTAGAATCAATCCTGTCTCTTGTGAAGACTATATACCATGTGTCACCTCT
s HiC_scaffold_1 140447529 3048 - 233722169 GAGTTCCAGCAGTGAGTGGA-----AGAGAAACGGGGAAAGCAGTACAGATATAAagtgaaggaagaggaaaagaaaccatAATAAAGTTGGAAGGAGGGGCAGCGGTTTT-------CCCAC-AACTTACTTGTCCCGACACCCATCCTTGCAGTCACAGCCAACCAGAAATTCCGGACCTGTATTAATGAACACACCCTTGCCTGGAATCCGTTCCTTGCTATAGGCCACCTGGGGTGGAGGGGTTGTGTCAATCTCATTGACACAGGACAGGGGAACATCTTCCTTCCCATAGGTGATGTCCAAAATATAGTAAAAAGGCTTATAGGGCTGAAATTTTCGGTCCACTAGAACGTATGGATCCAGACAGAACATCTCTAGGAAGAGGAAGTCACATCCAGTCTCAAAAAGGTAGCGTTCAATCTCTTGCATTGTCCGAAGGCAGAGGCCACAAGGTGTCTTATAGATAACGTGAAAGCCCATTTTGCGGTTAACTCGGCGCCGGGCAGTCATCCGTCGGAAGTCATACAGTAGTGGAACCAACAGAGGGTTTTTGCCTCGGTACTGCTCATTCCTCATAGGTCTGACCCGAGACAGACAAGTATAGCTGCAGACATGAGGTAAGTAGAAAAGCTTTTCCATGGGGGCGCGGTAGGAGGGCTCTGCTGGGGCCCGTTCCAGCATGCCATGAAAGG------------------------------------------------------CTGGCGGGGCTGGAGGAACTGGGGGCGCAGCTGGTGCGGGGGTAGAGGTTGTTGAGCTTAAAGGTGATCTGTAAATGG-----GATACATCAGATTAGAAGGCAACAAGGCCCTTCTATTGTGTAA-TTACCCTTCAGCTAACTAAACCATTTCTCTCATCTTTCAAACTACTGT----------------GTGTGtgggtgttgttgtt-----gttgttgttttttttttttttgagaca-----------------gggtctcactg--------ggtaggtcagc-------------------------tggccttgag-----------------tttactatatagcc--------------cagattGATCTTAAAC-TTGT----------------------------GGTTATCTTCCTGTCTCca--------------cctcctgattgctgggattacaacgcactaccaaacctggctcaaACAACTGTGCTCTTGAAACTAGAGATGACACAAAAATGGGAATCTTCCTTTGTTTTATCAAA----CCTGGGCAATGA--AATTCA---CTGGTTACTCTTCATTGATT-----GAGAAATTGCA-----ATTTGAACAATATA-----TCTTATTCTATCTGTAAATTATGGAGGTATTGCCCAGT-CTCTACCAAacccttttatttttgtacccTATAAATGTGCTAATGCCTAggattcaaggaaagag-atagtAGAGTCTACTTTCTATTGTAGCACTGATGGTGCC------------AGGTTCTAACAAATG----TCTCTTGGTGGTAACGTTTCTAAGCATCCAGTTTCAACTGCagatctttttttgtatttatcctTTTAAGATGAAAGCTTTCTTTT-AAATCTGAACTCCTCACCATCATAACCT-------AAGGTCCCTTGAAGCCAAGAAGCTGGCCCTAGAAAGTGATCAACAGTTTGTGTTGTCAGCCCACCCACAGAAGCTGAGATTTTCTCACCTGAATGTCTGGTTGATCCCAGGTTTCCCACCAGAGATATTTTCATTGAGTGCAGGGGATGTAGGGGAAGAATGACCAGAGCCCACAGATCCTGGTCTGAAGGATGTGCTCTTTTTGGCTACCTGCTTCCGTGACTGAGCAAGCTGGCTTTCTAAACTTCTAGGAGGTGTGAGAAGAGATCATATAGTAAGG-----GAAG--------CAGAAAATgtatgaaagaaactgaagaaaaaagaatgaatagcaCTCACTCATTTTCACCTGCTTGGGGGGACACAGGTGGGGCAG---GTGGAGCAGGTGGAGCTGTAGGTTGTGGGGGCTCCACTGGCTTATATTGGGTTCCAGTGCTTGTTAGATCCTGGGTATACTGGACAACAGGGCCTTTGCTCCTCACAGCACCTACAGGAACA------GGCAAGTAATCACTGAGAAGGTGGTAGCTGTATTG---ATTCACATTCCTG---ATTCTTAACTTCTATGCAATTAAAAAAGCAGCAACTTAGCCAGCTATGGTGGTGTAtgcatataatcccagtactctgagaggctaagaTAGG----------------------CAGTTCACacgtttgagc----------tcagcctgggcaacttagtgagactctgtctcaaaacaaa---------------------------------aatacgaGTTTGGAATgtacagtgtgaag-------------------------gccctggtttcaaccTCCAGTA---ATGGGGGACAGGGAACTAGCAACTT--------------AGTGATCAT------AAAGAAGATGGCAACAGAAACATTCTAAGTGCCAAGAGCATCAGTTCCCATTATTTACTCCTATGAGAAGGAATGCTAGC-------ATATACTGGT--TTTGACTTAAATATCAGGATTTTATT-------TTCCTGCCTT---------AGATAGTTTACTTCATTAGTTataatttgcaaatttttttttttttggcttttatgtgagttgctgggaat-----tgaaccccagGCCT-CCACCACTGTGCTG----AGCACCTTATCACTTGTGCTACATACACTCCCAGGCTccaatttgc-aaata-----------ttttgaa----aaatgtg-----ttttgtgaTCAATTAATGTTGGTGGGAAAAACTAACCAAA---GTACAACAGGAATATAAAGACACA-ATCAAAACCAagatgaaagcaaaagaaaagaaagactaagAGGCTAACAATTATGTGGCTAACAAAGGTAACTACCACCTCCATACCTACCCTAACTACCACCTCCCTAAGCTAAGCCAGCACCACAAATCCATCACCACCACTGGAAA---CTCAGAGTGAATGTG-CTGTTTCCAGTGGGTTGGTAGTGTCACCCTGGTAAACAA------AGTCACTGGATATAATCACCTTTGCTGGTCTACCC--ATTTCTCCCTCTCCTGG-TATATTTTAAG----ACATACCCATATTTGGACGTGTCCTGAGCTGTCCCCCTTGCTTCTTCTCCAGTGTAGAGGCTGAGGATGTCTTCATGCTAAACATGGGCTCTAGCCGTGTAGAGCCTCGATAGATCCATTCACATCTTTTATCATcctgagaggaaggaaaggagagcagGGAGAAA--TAAGTTAATGGTTAGAATCTATCCTGTTACTTGTGGAGAATACAGACAATGTAGCATCTCT

a score=22423
s chr3            95341636 458 + 160039680 TTCTTTGGAAGAACATTACCAGAAAGAGGATCCTGACTAGGCTGCCATCCACCTCTTCAACTCGAGACTTCCACCATGTGCCTTCCCACTCAGTCTTGATAAGCTGCCCACTCTTGAGAAGTACCATTGGGCGGTTTGGATAGGCAGTGATATATTCCTCTATGAAGTCTCGGCAGGAGCTATCTTCTATGTCCTCCCAAGTCTTTTTTACTGTCCAAAGGAAAGAAGCAGAGCTGAGGACAGGAAGGACATATCTTGAAAGGGAA--------------GAACGGTTGGCACTTTCAAAATTTAAAGA---GAAAAAATAAATAAATTCATAACCTCAAGGGAAGCAAAACCAAGACCATCTTAAGTACAGAGACTAATGTGCAAATGCACATATAAATACTAAATAA--ACTAAGCCACATACAAACCTAAGCAATTCATGTAAAAGAAACAGGCATTTCAGTTTATGGAGAATC
s HiC_scaffold_1 140451850 471 - 233722169 TCCTAGGGAAAAACAGTACCAGGAAAAGGATTCTGACAAGGCTGCCATCCACCTCCTCAACTCGGGACTTCCACCAGGTGCCTTCCCACTCGGTCTTGATAAGCTGGCCACTCTTTAGAAGCACCATAGGGCGGTTGGGATAGGCAGTGATGTACTCCTCTATAAAGTCTCGGCAGGAGGTGTCCTCTATGTCCTCCCAAGTCTTTTGCACTGTCCCAAGG-AAGAAGAAGAGCTGAGAGAGGGCAGGTAGTTTTGTGACTGGGCAACAGGGTGACAGGGACAcagttaatatttttcaaattgacatacagaaaaaaataaagaaa-tcataaCCTCAAGGGAAGCAAAACCAAGAGTA-CGTACGTACTGAatctaataaataaatgtatataccaAT--TAAGTAAATATTAAGCAACAAATATAGATAATTCACTCAT-TCATACAAATGGacatttttccttataaaaattc

a score=11013
s chr3            95345230 484 + 160039680 cacaGCTTCTATAGGAAGTTATTATGTAGACAATACAA--ACAGAAATGT-----AAAACAT--------GAGAGCAGC----CTTCTTTAAACCTAAATTCCTTAGAAATGAAATCAAAGCAAATCTGTAAGTTGATAAAGACAGTCAGAATC----------TTTTAGGGTTCATTCAGGCTACAAAGTT----------AGGGA------ACAATGCTATGTCTCCAAA-------CAAACT----------------GGAACACC-AAAACAGAAGTCAAGCCTTTTAATTTACCACCTTAAGAAGACATACAAAACAGAGTAAGAAATT----AGAGATGAGGAATTGTGTAGGGACACTTACGTGGTCGGCAAATGGGATAAAGCTCTGACTGAGTGACATAGGAAGCATAGCCATCATCAAAAAAAATTAAAAATCTGC-AGGAAAAGGAAACAG-------ACATGGAGGTTATACGGAA----------------TGTTTTATCACTGGGTACATTATTATTCTTTTCATTCTCTGAA--------ACACAGATCAGTCCAGTCTCCCTTTATTTTTCCC
s HiC_scaffold_1 140452643 561 - 233722169 CATAGCTTTTTTAGGAAAC-ATTATGTGAActacagatttacagaaatgtCAAGTAAAACATCAGACTAGGAAAGTAGTAATACTTTTTCAAATTTGAATCACTcagaaatgaaatcaaaatacatCTATAATATGAATAACCTATCCAGTATCAGCCATGACATTCTAGTATTT-TACTCGTTACAAAGACCTAGCCATAAAAGGAGGACATATAATGCT---TCTCCCAAAGAGCATCAAACTTACATTCTTTAAGAGTAGAACACTTAAAACACTAG---GGCTTTTCAGCTGagcatctgaagaagaaatacaagGCAAAAAAGGAAACTTGATAGAGCTAAGGAAT-----------ACTCACATGGCCGGCAAATGGGATATAATTCTGACTGTGTGACGTAGGAAGCATAGCCATcatcaaagaaaatgagaaatctgTGAAGGAAGAGTGATAGTTAAATAATGTGGGCGTTATATTTAACATGatctatagaaattattttatcacAG---------TCATTCCTCTGGATAATTGGACACACCCCACAGAAAACACTCTggtctattttctttcttctc

a score=36160
s chr3            95346528 1925 + 160039680 AAAGCTAACAGTGAAATTCTGACCCCAATACGAATAGATGGCACCAGGCCCCATTCTCCTA---------CAATCTACAATCCCTGTCC-AGATACCTGAGCTTGTTCTTGACGTTAGGGGTCTCAGCTACAATGCCAGCATAAAGCCAGACCTGATTTCCATCTTTGTACTTGGCCACCACTCGACTGCCCACAAACAGCTTGTCAGCGGGAGGGTGGTAATCATAGGCAATATGGTTCCCAGATAGCAGACTCTTTCCTTTGTTGTCAAATTTCACTTTGTATTTTTTTCCTAGCCCTGTATAAAAGAAAAGAGAACCAAAATTTTAAAAAAGAAAATCAAAAAACTGTTATTTCCAATGTTAAGTCTTGGGTGCAACATAGAAGACAAAAGAAAAGGCTTTGG-----AAAAACAGTCAGCAATGGATGCCCTACAGGTTACCTTTGCTCAGTCCTTCCTCCAGCCTGAACACACATACCAACAGTCTGGATGGCAATAAGGGTGCCTTTGTGCCATGTCTTAGTCCTCTTCTTGCCCAGAATCCGCATGCTGACTATCAGGTCCCCATCTTTGCTCAGTTCTCCAGACACCTGACCCAAGGTTCCTATAAACAAGAGTTGTTATAAAGAGTG-----ATTTGAGTGGTTGGATGGAGAAAGGTAA-------------------GGTCAAG-------------------AGGACAGTAAGGTAGGATgggctgtagctcagctgctggactgcct-gcctagcaagcacaatgccctggat--ttgaacctcagcactgcatacacct----ggcataatagctcatgcctgtaatctcaagttctcagagaagacaagag--------gatcaaaagtttacagtcatcctcagta----acacagaaa--------------------------------------------------------------------attcaaggcc--------agccta-------ggatatagaagatactatctcaaaaacag-----aaGGTGGTGTA----------------------------GAAACAGAGGAAACTGAAATTCTG--TGACCATTAGCAACTCTTGCTAAACTC-------------------TTGGATA--------GAGGCAGAAGCACAAGA--CAATCCACTGTTT----ATGCTAACA-------GGAGAAATGAATACAGAACTTTAGCACATTTCTAACTCCTTTGGCATAGTCTACCAGCCTATGCCACGAACGACTATCGACAAC--TCCTTATTGACAGCAACAGTATCAACAGTTAACAGCCTGAGCCACCGCATCAATCAATAACTCTCAGACTGACTGTGGACATAAAATTAATGTTAAAAAGAGACTGACAAGTCAGagccggg---------cggtggt---ggcacaggcctttaatcccaacacttgggaggt----------------------------------------------------agaggcaggcagatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccaggactatacagagaaatcctgcctcgaaaaacaaaCAAACAAAAACCCACCACCAACAAAAAAAGAGACT--GACAAGTCAAACAGCATTCTGAGATGGAAAGCTGACTGTCAGTAACATTCCAGAAAGAACTCACCTC-TCACCTATGCAGGCACTTCTCACACTAACCTTTATGTAGATCTTGAGAACTGCTTTTCTTGTTGACAGCATCCATGAACTTCTGGACATCTTGAGCTGATTTTCTTAAGGCAGCCATAGCTTCACGAAGCTGTAGGAAAATAGAAGGGAAAAA-AACCCTGAGTATTATGAGTTA--GACAGCT-----------------------------CTTGTCTAACATGCATAGGGACCCATGGTTTAGATCC----CAATGCTGCAAATAAGTAAAGCCAAAACAAATCAAC---------------------AATAACAACAAAACACGATAAAGAACACTGCCTGTGAA--GAACTTGTC--------------------TTCAATAAT--TAAAATAGATTCAA---CTGTATTAAAAGGCCAGACAGAGGCAACTTCTCAATTTTTCTGCATTCTTGCAATATCTACAAGATGACTGTAATGAATGGGACTTATTATATGGTGAATACATTGA-AACTAAACTGAATGTATGCTTAGGCTAAA------ATTCATTACTACTttcttttttttttt
s HiC_scaffold_1 140453611 2198 - 233722169 aaagCTAATTGTGAAACCTAGACTGTCAT--GAATAGGG-----CAGGTGTTGTGCTCCCAACCTTTACTCCCTTTACAATTCTTCTCCCAGGTACCTGAGCTTGTTTTTGACGTTTGGAGTCTCAGCTACAATGCCAGCATAAAGCCAGACCTGATTCCCATCTTTGTATTTGGCTACCACTCGACTGCCCACATACAGGTTGTCAACAGGAGGGTGGTAATCATAGGCAATATGGTTCCCAGACAGCAGACTCTTTCCTTTGTTGTCAAATTTcaccttgtatttctttcctgaccctgagtaaaagggaaagacaaaaaaatttt-------------aaaaaactatcagTTTCTATG-TAAGTCCTAGTTGCCATGTGATGGATAAaag-aaaggctgtggggaaaagaaacaatcaacaagAGA---CCTACAGTTTGCCTGTCATCAGTGCTTCCTGTAGCTGGA----ACATACCCACTGTCTGGATGGCGATAAGGGTGCCTTTGTGCCATGTCTTCGTTCTCTTCTTGCCCAGAATCCGCATGCTGACTATCAGGTCACCATCTTTGCTCAGTTCTCCAGACATGTGACTGAAGGTTCCTATGGAAGAAAGC--------AAAGTGCCACTGTTTGTGTAGCCAGCAGGACA---GTAAATATACCAGTTACAGTATTAGTCAAGTATGCTTCCCACCTggccaaagacaaaaatgcaagaCAGAAAAT-----------TTGACAGTTTAGGCTAACAGGAGAAA---CCTGAATAACTGAAGTTCA------TACACAATTCAAAAGCATCTCACTTCACCCCAATGTTTACAACTCCTTATGAACAATGGTAGCTACCATTCATTAAATGCTACAAAACATTTTCCCTGTTCTACAAATAAAGCTTTTCCCAGACCTTTTTATAATAGCCTGAATTAcctttttcttcctaatttttcTCTGGATGTAGTATTCAAAAGCATGTAAATAGCCTAAATGTAGGGAAATAAAAGGTACT------AAGATAGctggtatggtggtacatgcttataatccagcactttgcaaggctgaggcaggaggatcacaagtttgaatcaaGCCTGGGTAA-TTTTATGAAaccctctaaaaaataaaaagaggttgGATATGTAGCttagagcaaaggccctgggttcaatcctcagtgccacaaaaataataaattagtgaataaatgaatataacaCTATTACGGATCAGAAAATCAGTTGCTGTA---TATTGGAATTTG--ACAAATAA-TAAGGACAATGAGTCTGGCATAttacaacaaaacaaacatcAGACAG---gggaaacaaaaatcacaaataa-tcTTATACTGATCTTGGACATATAGCATATGGTATTAAAaga-----aacttggggctggggatttacctcagtggcataagcgcctgccttgaaagcaggcagtcgtgagttcgatccctggtaccgataaaaatgaaaaaagcaaaaaaaaaaaaaaaaaaaaagaaggaaccaGGTCTGGGaact------tagcttagt----ggcataagcgcctgtttaGTAAGCACAAAATTGTTAAGTTCAATCCTTGATATC-----accaaaaatcaaac-caaacaaacaaagaaaccagAAGAATTGGAAAAG------GAGATCGCAATT---CTACCCATAAAATCTCTGTAAGAATTCATCTCTTTGTCCTTACATACTCCT-TGACCCTAACCTTTATGAAGATCCTGACAATTGGTCTTCTTATTCACAGCATCCATGAACTTCTGGACATCTTGAGCTGATTTTCTTAAGGCAGCCATAGCTTCACGGAGCTATAGGAAAGTAAATTAGAGAAACAAGTTTTAGTAATAGGGGTTAACAACAATTTGAAAAGGCTGAGGGGGAGTGGTTGAGTGCTAGCCTGATATATGTGAGGCCTC--GGGCTAGATTCCTAGCAGTGCTTACAAT-----AAACTAacttaatttatctttttatttttattttcttgaaacagTTTTGCTACACAATGCAG----CTGCCTTTGGACTCACTCTGTCCCACAGGCTGCCCTGtgacttgcagcaatcctgcctcagtctcgagtgctggattacaggtgtgcatcactacatCTCGTC-TTCCTTTTACATTCTTGTAATGTCTGTTAG--GACTGTAACTAACAGGGCTGATCTCAGGGTCAATGTGTTGGtgactaaactaaacaaatgctCAAGTCAAAAGcttcatccattttgactttttcttttttctt

a score=6035
s chr3            95349746 152 + 160039680 aagtcttctagaa--gagcagcatgctctccttaactctacctatccctccagcccAATTTCATGATTAACTTCCTATACCCAACCCAA-CTCACCTTCTGGTCTTTTGGAGTTCTGCTCCCAGCATCACCTATGAAAGAAAAGAACTTCAGTGA
s HiC_scaffold_1 140455860 149 - 233722169 AAGTGTTCTAGTACTGACCTCTACACCCAGCCTAGTTTTATCCATT--TTCAACTCAATCTC----TCAACTCTCCTTTACCAACCCAATCTCACCTTCTGGTCTTTGGGAGTTCTGCTCCCAGCATCACCTGTGGAAGAGAAGCACTCAGGTAA

a score=19360
s chr3            95352720 420 + 160039680 GGAGGGATTGATGATCAAACACAA---TAAGTACAACAAACCCAAATACAGGATGAAATTTCATGTAAC----AGAGATAGCATCTGTCAGAATCCATATCCCTATAT---AGGAAATATAACAGTCGGGACAGTATATGCACATGAACTATACCAAATGACATCGTCAAAGTTGGCCTAACAAATTATGCTATAGCCTGTTGTACTGGCCTGCTGCTTGCCAGCAGACTTCTCAGTAGGTTTGGCATGAAAAAGATCTATGGAGG--------------CTAGAGATGAA---------------------AGTCAGCCTGGTGACATCCCTTGCTATCTGGATGTAGGACATACCCAATCTACAATTGGCAATAAAGTTCTTAGAGCCCAGAAGGGAGCTGTGGATGGAGGCTTGACAATTCCTCACAGTATCAAAC--TGTTCTGATTAGGATTCTGAACGCAA
s HiC_scaffold_1 139440634 465 - 233722169 GAAATGCTTGGTGATCCAGGACAAAAATAAGTAcaacacacctaaacacaagATGATACTTTGTATAACTAACAGAGATACCATTTTTCAGATCACTTATGCCCATATTAAAGGGGATCTAATAGTCTGCGTAGCATATGTACATGAACTA--CCAAAATACAGTGTGAAAGTTGGCTTAATAAATTATGCTGTGTCATATTGTACTGGCCTGCTGCTGGCCCACTGGCTTCTCAGTAGGTTTGGCATGTATAAGATCTGTGAAGGCCAGGCAGAGGTAACTAGAGATGAATACACTGTGGAAAGCATTGATGGTAAACTTAGTGTCTTCACCTGCTATTTGGGTACAGGCCTTGCCAGAACTACAATTGGCAATAAAGTTTTTGGAGCTTTGAAGGGTGTTGTGGGTGGAGGTTTGTCTGTCCCTCACAGTACCGAATGATTCTCTGATTACAATTCTGAAAACAA

a score=8034
s chr3            95352739 418 + 160039680 CACAATAAGT---ACAACAAACCCAAATACAGGATGAAATTTCATGTAACAGAGATAGCATCTGTCAGAATCCATATCCCTATATAGGAA---------------ATATAACAGTCGGGACAGTATATGCACATGAACTATACCAAATGACATCGTCAAAGTT-GGCCTAACAAATTATGCTATAGCCTGTTGTACTGGCCTGCTGCTTGCCAGCAGACTTCTCAGTAGGTTTGGCATGAAAAAGATCT-----------ATGGA---GGCTAGAGATGAA-----------AGTCAGCCTGGTGACATCCCTTGCTATC----TGGATGTAGGACATACCCAATCTACAATTGGCAATAAAGTTCTTAGAGCCCAGAAGGGAGCTGTGGATGGAGGCTTGACAATTCCTCACAGTATCA--AACTGTTCTGATTAGGATTCTGAACGCAAACTCAATATAGagctga
s HiC_scaffold_1 138837274 423 - 233722169 CACAATAGATGTAACTACATGTCCAAATATAGGATAATAGTTTGAGTA--------------TGTCAGGTTGTACACACATGTATGGAAGGGGATATGTTTATCTACATGACAAATGC-ATAGCATATGCCCATGAACTACA----AAAACATGGTATGAGTTTGGCCTGATAAATTTTGCTGCAATGTATTTGACTGTTCTGCTACTGGACCACAGGATTCTCAATAGTTTTGGCAAGGACAAGATCTACAAGAGGCAAATGGAGATGACTAGAGATGAACACAGCATGATGGTCAATGTGGGGTCTTCACCTACTTTTGGGATGGATGCAGGCCTTGCCAGAACAACTACTAGCAATAAAGTTTTGGGGAC------------------------cttgtttgtttctcatattatCAAGAAACTCCCTGGGTATGATTCTGAAAGCAAG--GAATTTAAAGCAGA

a score=36359
s chr3            95354266 3240 + 160039680 aactgaaaaagaaactcagacaTAGGCAAAC-------------TACACACAAA---------CACATGGGGGAAAAGACAGAAAAT----AAGTATACCTTATCTGAAATGGGGAAAGG-----AAGCAATCAGAATACAG-------AAAACACTTACGATGCTAA---GAATACTTACTTGTTGTCATAATAAGTCAGTCAGGTTTTTGGCATATTAAGT-AATGACAATGTGATTCTTTATGTGCAACATACTTGTCTTCCAGTATTTCAGCTTCCATTCTAAGACTTTTCTGACCAAAGCTTCATCATTTACCTGAATCAATACTGAGGACATCATCATCTTCATCAGGAATCTCAATGATCTCTGTGGGCCGGGAAGCTTCATCCTCAGAGCTACTGTCATGATACTGTAGTCCCAGCTTAGAGTAGAAATCCTTCACCAAAGACTCACAGTTAGTCACTTCCCTGATATTGGAACACATGCAGAAAAGATCAAAGCCAGTGGAGACAGTGCAGTACAAGAGC-ATTACAATGTATATACATTTATACAATACCTAGCCTCTGAGCTCACACATGTAATCCTAGTCCTTAGCCTGAGGAACCAAGACTAGCTAGGTTTGAGGTCACTTTGGTCAATAGAGTTCATGGTCAATAGAGTTCATGGTCAATACAGTTCATGGCCAG-CATGGCCTACAGAGTAAGAAACCTTTAGACAGAACAAAAACAGAAcccagcactcaggaggcagaggcaagcagatc--tctgaattccaggccaatttggtgtacagaggtagttccaggacagccagagttacaaag--aaacggtctcaaaaataaaacaaaacaaaaacagaaacaaaaacaaaaaACAACCCCCCCCACATACAAAACACAACACAGTAACAGGAAATTATGTATATTTAAATATAGACTGTTTGCTCTACATGTTCCAAAGTA---CCTATTTAGAATGCTTTTCCACAGAATGTTTGTTTCCATGTAATTCTTCTATGAAACAATTTTCTAGACTTCAATTTTCCACCTGCTGTTACAAAAGTCCTAATATCTGATATTTATTATCTATGTGGCTTTGGGAACTAAGAAGACAGCTTTAAATATCAACTTCATTTTgctgggtgctgtgaaacatccctttaatctcaccactggagaaacaaaggcagatgggtctctatgagtccagctcaatatggtttatatggtgagttctagggcagccaattctacgtaaagagactttgtatcaaaaaTGGATGAACGAAtgaaaccccaatcaactcaacaagcataagctaggatcatttcattgcagctcttaggaggcaaaagtcggcagatctctgcaagttgcaggccagcaagatttaggtattgggattctgtctcagaaaaacagaaAAGACAGCAACTCTACAATCTTCACTTTCTGGGGATCTTAGGAAGGAAGTTCAGTCCAGGAGGAAGAGAAGGGAATTCAAGCCTTTAACCTAACTACTGCTGATCACATAGCAGCTACCCACAGGGAAAAA---GTGT---TCTGT-TGCAACTCTGCAT---------TACAAACTCAGA------------------GGAAGAGTAAGGCCCCACCTGACTGAAGTCGCCAAAGTATAAAGTGCTTAGGACAATGACAACAACAGTCA--CTCCAAGGAGGACACAGATGGACA--TTTACTTCTGCTTCCTG--GAATCCCTACCTGGATGCATCATCAAACAGCCGATCAACATAAGCCACTTCAGACTCTTTCTGTAGTACCCACGTCTCCAGCTCTGCGAGCTGCTTCTTGCGCTGCTGTATGCAGTCCATCTTTTCCAGTTCCTCATCAATGTACTGACGAAGTTCCTCCATAGAGATACCCAGCTCTTCAACCACCGCCTGCTGCAGCTCAGCAATCTCTGCAGAGTCAGCTGCAGCTGGCGCTGCAGCCAAACTCATGCACCCAGGGAGGGAGGACATGCTTTGGCCCTGTGCAGGATGAACAAGAAGCGAAAACAACTC---------TAACCGAGGCTCACAC--CATTTCTGTCTCATAATCAAAAGCC---------------TGCAAACTCTGTTCTCTCCCCTCCTCCTCCACAAGGCGATCTGGAGATTTCCCGGGGAGCCTCATCTTCTCACACAGACCCA-AGCTCTGGGTA---------ACAACTAAGAGCGGGGAGACCCTGGAG------------AACTCCAACA-----------CGCACCAGGGAGCTA---------------------------------------------------------------------------GCTAAAACAAGGTT-----------------------------TCAGGA-AACCGAAGAGTGCTTATCGACCAAGGAAGATACTTCTGGGAGCTACTTGTTCCTTAATTGGCTCTG-----TCACT----ACACCGAGTCTAACCGAGGCACCGGCGGCTGGAGACAGGTGAGCCGCAATGAACTAATTCCACCCGGGTTGTTTAGTCCTCCTTTTC-CTCGCGGCTCTTTGCTTTCCCGTGGCAAGGTGGCTTTTAAAACCTCCTAGGGCCATGC-AAGAGGGCAGCTGC---ACAAGGGATGGGCTTCCCGGCTGCACCAGGCCCTGGG---------AGTCTGCGACCAGCAAAGAAGAAAAGGGACGAAGAGAGGAAAAGTCGGACATC--CCTACGTGA------------TCAGAGCAAAAGCTTGAAGCCATGG----CGACCACCCAGCAGCCACACTCGGAATAACGC---------------------GCACAGGCGCTTGG-------CCGCCCGGGCCACGCAGAACCGCAGCAGCCTCCAGCCTGCCGCCCTC-CTGCTTTCCCGCGCCTCATCGACGCAC-----------------CGCCTCACCCA----CGCACCGCCT----------CGCGCCCACCCGCAGCCGCCGCCTCAGGCCCGCCCGCCCCCGGCTCGCTCCTCTCCCGCCAAG-------TTCCCACACACAGCC-CCAGCCTCGCACCAGCCAAGCCTCCCAGGTCCAC-CTCGGCCTCAGCGCACCTCAGT---CCGTCCTCCCCACAACTCTGGCGCCCGACCGCAAGGGCCGCGTCTCACAACCCCGACCCCAGGTTT-TACTCCAGGGCTCCGCCTT---GCCAAACCCAGGCAAACTGAAGGAGAGACGGC-------GGGGGAGGGGAAACAGCGTGAGGAGGCAGGAGGGGGCGGGGAGCAAACCGACGGTCCGGAAGCAATAGGGAGCGTCCTTCCGGCCTCTCCGACGGTAGCCCGAAGGGACCAAATTTATTGCATAGCGCTGCGGTACAGGGGTTATGGGAATTTAAGGAGAGTATGCATGTG-TGAAGTAGGGCATTTCCAGATAAGGGGCTAGTTGGACAAAGCAGGTATTTTCCGGAGTCATTTATGGAAGCTCTTCC-CCTACAGGTGGCCAATATAGTTGA--TTATTGTTTTAATTTGAAGattttttttagtaataaaattaattttt
s HiC_scaffold_1 140471701 3144 - 233722169 aactaaaaaaaaaac---aaaatagggaaAAATCTGTTTGGAGATACATACATAACGTGATGGCACctataaagaaagacaagaaaagttaaaataaaggTTACACTAACTGGGGACAGATGGGTAAAGTATCAGAGTACAGCACATTGAGGACATCTATGGTATTAACAtggatacatttttttc-------tgag-----caGGTT---GGAATATGGAGttaatgacaat----ttttttttctcttatctctCTATCTTCTAGCATTTTTACTTCAATCTTGAGACTTTTCTACCTAAATCCTCATCTCTTACCTGAATCAATACTGAGcacatcatcatcttcatcaggAATCTCAATTATTTCTGTAGGCTGAGATGCTTCATCCTCAGAGCTACTGTCCCGGTACTGTAATCCCAGGTTGGAATAGAAGTCCTTCACCAAAGATTCACAATTAGTCACTGCCCTAATATCAGAACACAGGTAGAAAAGGTCAAAGCCAGCAGAG--------------GAGCCATTacaatttatatatgtatttaag------------------tACACAT-TATTCTTAATATTGGGCC-----------------CTACATAT-------------TCCATAGTGTC-----TCAATCTAG---------AATACATTTCCCAGCCAGGCATga--tgcatggctgtaatcc---------------------------catttactag-ctgaggtaggaggatcattgtgagtttgagaccagcctgggctacagtg--agctcaaggtcagcttgaactatataatcatacagtctcaaaaa--------gacaaaaa---aaacaaaaacaaaaa-----ccttttcctatagaaaa----atgttttaaacagtGGTTTGGTTT-------TGCAGACTATTTCCTCAAAAC--TCCAAAGTAAGCCAGAAGTACAATGCTTTCTATCTTATTATTTACCTTGCTGTTATT------TGAAAC-------TATAGTTCAAGT--------------------------------GACATGTA----------------GGGCATCAAAGACAAAGCTAGAGAATTTA----------------------GGAACAACTCTCAACCTGCACCCCCCAATACA-----GCagac---------tgaacctag---------gaccttgttGTGCTTTCTAGACAAGC-----------------ATTTTGTCAC-------------TGAATG---------------------------------------TCATCCCAGCTCA-AGGAACTAATGTTCCATAGGTACATCC----------------------------------TCTGTCCTCGGATGATTATAAACAAAACAACTCTTC----------------------TAGAATAGA------Gtacaagggaagaaggaagaaatttaggatttt----------ctgttaaaaaaatgcaatatatacacatatacatatatgcgtCTCTCTGTgcgtatatatacatatatattcttataAGATCAGATTTCAGATCATAAACTTTGAAGAAGTAAAGTTCCACACAACTGTACTT-----AGTAGAAACTTCTTAGTATAATGCCACCATTAACTATACTCAAAAATGTCTGCAG-TGGACAGATTTCTGTCTATTTTCTACTTAGTCCTCACCTGGATGCATCATCAAAGAGCTGGTCAACATGAGCCACTTCAGATTCTTTCTGTATCACCCATGTCTCCAACTCTGCTAATTGCTTCTTGCGTTGTTTTACGCAATCCATCTTTTCCAGCTCTTCATCAATGAACTGTCGAAGTTCCTCCATAGAAATACCTAGCTCTTCAACCACTGCCTGTTGCAGCTCTGCAATCTCTTCAGATTCCCCTGTAGCTGTTGCTGCATTCAAACCAATGCACCCGGGGAGGGAAGACATGGTTTTGTCCTTTAtat--ccaagaagaaattaaaattactcTGAAGTCGTTAACCACAACCAACAAAGAATTTCAGTCTTCTAA--AAAATTCATGCTTCACTGCTGTTACTCAATTagttttttctcccctttctccaAAACTTAATGCTGCAATTTTGT-GGTATTTTCAGTGTTTCCTATAGGCCAACAGGCCTGAATAAGAGAGTTTAGAAGTTTGAGTGTGCCAGGCATGgaggtatatgcctgtaatcccagcaattggagaggctgaggcaggaggctacgggttcgaggtcagcctgggttacaaagtaagttcaaggccagcttgaactgtacggtgagaccctatctcaagaccAAAAAAAGGGTGAAACATCTATTATGCCATAAGGAGTTACTCAGGATAACTGAAAAGCACCAATCTACACAGTAAAGTATTTCTTTGATCTAGTATTTCTTTGAGTGTCTGAGATAACTCACTCTAAATAATATGCTTACCTTGAACCTTCTCATCTAGGGGT-GGTAATTTGTAACTTACTAGTTCAAT----GTTTTTCAGTGATTTGTTTCTCTCATATTACTTTGTTTCTACGTGAAAATCTTACTTTTTAAA-----GACTACCACGCTGAGAGTGTAACTCCGTGGTAGTGGGCGCGATTTGCA--tacataaggccctgggttcaatcccagcactcaaagaaccaaacaaaacaaaaacgatATTATGTTTAAGTATACACCAGCTTGCACTAAAAAAGGTTTCCCCAAAGGAAAG---TAAAGCAATAAAATCTGGTTACCTAGAATCCAAAATCCAAAGAACTCATTAGTTTCAACTCCTTTTTTGTACAGTTACAGGAAAAACTCCCACTAGAATAACGTTCGACCGCA--AGGTGAGACCTCACCGCCTTCACTACTCTCGGGGCCCCCAACCCTGTACAATCCGTTTTAAGGGTGCGTCCCATCCACCTCCGAGCCGCCCGTGTTAGGGGCGCGTCCAACC-CAACCGTAACCT------TGCTCAATCCCGCTTCGCTTGCCTCTCAGCGAAGACTTTCTTCTCACGCTCGGCCAACGTCTTCTCACAAACAGAACATCTCACACAAGCTTTTGGTTTCTAAATTCCGTAATTAACAGTACTCTCCACACCTC-----CCAAGATACAA--ACGGTTTTTCACCAAGCAGACCCCAGACTCACGACTAAGGGGTTGGCCCCGAGGCGAAA--GAGAGAAACCAACGGGAAAAGGGAGCGGGAGGGGGGAAGGGAAGCAGCGTGAT------GGTGGGACGGGGAAGCAAAAGAGAGATCCGGAAGCA----GACGTGCCGTTCCGGTCACCGCGACGGTAGCCTGACCGGGTCAAATGCGAAGCTACCCGGCGCCCCTCAGAAGCTACGGAAAACTAAATTGATTACGCATGCGTTGAAGTAGGGCCTTTT---AGAAAAGACTGGTGAGACGAAGTGGGCGTGGTCAGG-----TGTACGGAAGCCCTGCCTCCTACAAGTGGCC-GTAAAACTGAATTTACTG------TGTGAAGACAGTTCTCA--AACAAGATTAGATTCT

a score=15254
s chr3            95386346 724 + 160039680 TAGATGGGCCTCACCAAGCATAGC-ATTATGTTATATTACATCATTAAATTAAGTTCCAGTGTCCTACCCCAGGGACATAAGATATGGGACAATTGAAACTCATAGCCTTAGTCTAGTCAATAAGTTCAACTT---------------TAGTAATGGATTCCCTGAAAAAGAACAACGAAAAATAGCCCCACTTTTCTCTCTGGTGAGA----------TACTCCTACATGCTTGTTACAGAACATAAGATTGCA-AGCTTGAGAAATGCAGAGGTAAGGGGATATAAAGTCTGGATCATACACATCAATATAAAAGATTTTAAATGTTgtgatggagcattctttgtagtcccggtatttaggagggggaggagaaacagggttcagggttttgaggcaagtcttggctgtataagaccctgctaaaagcaCTGCTCCACTAAAAAATGATTGCAAGTCTCTTGTCAAGAGGAGACCTCTAGGTTTGATGGTACTTCAATTCAGAGGCAGGTCTGCGGTTGTAGAGCTGACCTCATAGGGATTCTTCACCAACTTTACACACCGAAAAACCATCACTATTAGGAACACAAACACAAGGACAACGAAGGCAATGGCAAAGCCTTTGTCCACATCGATGCCATTGGACATGCTGGAATCTTCCATGAGGACACACATCTC-TTACTGTCTTCCAGACACAGCTACCTCCACGG----GGATAGCTTCAGATTTGTCATATTTCTAGGGAGGAAAAAA
s HiC_scaffold_1 140505118 607 - 233722169 TAGAAGGGTGTTACCaagaataatgataatataacacTGCATCATAAAGTTGTAGCCCACTGCCCCGTCTTAAGGACACTAGAAACTGGAC---------TCATGAGCTTACTCTA-CCCATGAGTTTGACTTGTCTCTTTCCCCCTTTAGCAATCGTTTCTCCAAAGAAGAGTGATAAAAACTGACGTGGGTTTCATCTCTCTTTATTATTCTCAGCTCACTCTGACAGCCCCGTTGTGGAGGGCCAGAGTGAGGAGGCTGAGA----TGAAGGCACAGTAATGTAGAGTCAGGGAGGTAAAAGTCTGTGTGAGAGATTTTAACTCTTGTGAGGGG-----------------------------------------------------------------------------------------------CTGC--------------------------------AGAGGAGGCTTCC--------CCCTACTTCAGCTCAAAGACGGCTCTGTGCTTGGGGAGCTGGCCTTGTAGGGATTCTTCACCAACTTGGCACACCGAAAAATCATCACGATTAGGAAGATAAACAGAACAATAACAAAGGCAATGGCAAAGCCTTTGTCTACATCAATACTGCTGGACAGATGTGACTCTTCCATGGAGACAGGCAGCTCTTTACTGTTTTCCAGCTGCAGCTACCTCCTCAGGTGTGTGTGTCTTCCAATTTGTCATATTCCtagacaaaagaaga

a score=8771
s chr3            95405346 246 + 160039680 GGCAGTGCTTACCTTT-----GGGACATCAGAGGCCAGGTTTGTTGTCTGTCGCTAGGTCAGTCCTCTCCT-----------TCTGTTGGCAGCCTCTCGCTCTTTCACACTCCCTCCTAGGAAAGCAGAGAGGTTTGTTTGCTGGGTCCCTTCTGCCCTGCACCCTGAATGCAGG---TTCATGAATACTTCAGCTAAAACAGAATCAAGTTTCCGACACTCCCGTGGTGAGGAGGAAATTGATCCACTAGGTCGAATCGGAGC
s HiC_scaffold_1 140530441 254 - 233722169 GGTAGTTTTTACCTTTCATGAGGGCTATCCAGGGTTGGATTTGG---CTGTTGCCAGGGCAGTCTCTTCCTACTCAAGCACATCTCTTGGCAACCTCTCTTATTCTCA-GCCCCTTCTTACAAAAGCAGAGTGGCTGGT-------GGCCCTTCCGACTCCTACGCTGAGCTCAGAAGCTTCATGAATAGTTCAACAAGAACATGATCAAGTTTCAGACACACCCACAGTGAGTGAGAAAATGATCCACTAGATTAAATTGGAGC

a score=8213
s chr3            95410300 158 + 160039680 ttcAGCAGACTTAATTC-TTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCC
s HiC_scaffold_1 140732020 154 - 233722169 TTTGacagatttcattcattttgtgttCCTTACATAAAATGCTTTATGTTGTAGCTACTGCTAGAGCTTGAGTCTTCGGGA--GAGATTCTGGTGTGGGTTTTCACAAATTGATCAGTAAATTCCTGGTAAGGA-ACTTGGTGA--ACAGTTTCTCTCC

a score=31193
s chr3           95410305 925 + 160039680 CAGACTTAATTC-TTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTGCCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGGCCCCTGGGTCCTCCGGGCACCTTCCACTGCACCAGCGTCATCCGCCATTTGGTGTTTTCCCGAAGAAGAAG
s HiC_scaffold_1 71897969 709 - 233722169 cagatttaattcattttatttttcttgtataaaaACCTTTATGTTGTAGCTACTGCTGGAGCTTGAGTCCTCCAGACAGAGACTCTGGTGTAAGTTTCCTCAAGATGCTCAGGGAATTCCTGGCAGGAAGACTTGGTGAACACAGTCTCTTTCCAG-------GGGTCAGGTGGCTCT--------------------------------------------------------------------------------------------------------------------------------------------------GGGGCAAGGGTCAGATGTAC------AGAGCCACCGTGGCACATCACCTTGCAAAGGACCGTGTGCTGCTTGCCAGTCTTGTTCCCTAAGTAGCCTTTTGGCACGGGGGTG-TGCAGAGCTTGGCCAGGACAATGGCCTCCTGAATGACGGTGGCTCCTTACTTGGAACACTTCACACCCAGACCCACGTGACCATTGTGGTCCCCAAAGGCAACAGGTGCCTTGAACCTGGTCCACTGGTCAGCAGGAGTTTGCTTCTGCACAGGCCTAATCCTTAGAACTTCATCCTTGAGGGATGCACCCGGGGA-AAGTCAGTCATCTCAGGCTCCTTGATGGGTAAGGAAAAGATACAGATTTCCTCCCGGGACTTCATCTTTATGTCCTTGACCAGCCCACCCAGTTAGGTAACAGGAATTTACTCC-TGTCAT-----------------------TGGCCTC----CCTGCTGCGATCCCAATGGCCCCTGCCAAAGACTCC----------------------AGGCCAGGGCCTCTGGTGCTTT--AGTCCCTCCCACTGCACAGGTGTGAT---CCATTTGTTG-TTCCCCAAGGAAGAAG

a score=36583
s chr3           95410309 919 + 160039680 CTTAATTCTTTTATTTTTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGT----GAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCATCTATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAATAGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGC---ACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACGCACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACC--------TCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTGCCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGGCCCCTGGGTCCTCCGGGCACCTTCCACTGCACCAGCGTCATCCGCCATTTGGTGTTTTCCCGAAGAAGA
s HiC_scaffold_1 31945802 860 - 233722169 cttattcactttatttttctcatgtagaAGCCCT-GTGTTGTAGCTACAGCTAGAGCCTGAGGCCTCTGGACAGAGACTCCGGTGTGGACTTTTACAAGATGGTCTGTCTGCAAATTCCTACTG-GGAGACTTGGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTTTGGCAGCTGGATGTCTTGGAGATGATATCAATGGTGGCCTTCGTGAAGCTTCCCAGAGGAGCTGTGCAGCCCCTGGCAGAGGTATGGCAGGCTTCAGTGC-AGCCATCAG------------------AGAGGCAG----------------CCTGGGCATGGGGCTTAGATGC----TGACAGAGACATAGCAGCCCCTCATCTTGCAAGGCACAGTACGGGGCTTGCTGGTCTTGTTCCCCCCGCAGCTTCTCTGCAAACAGACAATGGAGAGCTCAGCTAGAATCACTGCCCTTCAGAGGCCAGTGGCTACCTCTTTGGAGCACTTTACACCCAGACCAGCATGACCATTGGGGACCCTAGGAGAAACAAACACCTTGAGCCTGGTCTGCTGTCCAGCACAAATTTGATTCTGCAGGACTGGGATCAT---------------CTTTGAGGATGTAGCCAGGAAAAAATCAATAGTCTCAGACTCCTTGATGGGCAAGGTGAAAAGATAAATCTCCTCCAGAGACAT-ATCTTCATAGTCTTGACTGGCCAGCCCTACTTGGTGGTGGGGATCCACTC--TGTCCTGGACCTTTCCACCTCAAATTCACAGGCCC---GGCCCCTAGTGCACCCACAACCTC-GAGGCTGATGCTGAAGTCTCCAGAGACGCTCCTCTAGTGTCCCATGCCTGGCTCTCAGGTCCCTCCTGG----------GGCACTGGTGATATCC-CCATACGGTATTTTCCTGAGGAAGA

a score=37052
s chr3           95410325 929 + 160039680 TTCTTGTATAAAAACCCTTGTGTGGTAGCCACAGCTGGAGCCTGGGTCCTCTGAACAGAGACTCTGGTGTGGGTTTTCACAAGATGATCAGTGAATTCCTGATAAGGAGACTTGGTGAAGACAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTAGAGATGGCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCTGGCTGAAGTGTAGCAGTCAT--CTATACTGGCCATCATCAGGAGCTTCTTGGGCACAGGAGCAGAGACAATTCCAGTGCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAACCTCTCCACACAGGGACGATGGAAAGCTTGGCCAAGATGATGGCCCCTCCGATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCATTGTAGTTCCCAAT-AGCGATGAAAGCCTTGAACCTGGTCCGCTGGCCAGCCCGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGGACG-----CACCCAGGAAGAAGTCAATGATCTCAGACTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCCCCG-----TGGCCTCGACAACGGCCAC------------GACCCCTAAGACCGCTGCCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTA-ATCCTGGGCCCCTGGGTCCTCCGGGCACCTTCCACTGCACCAGCGTCATCCGCCATTTGGTGTTTTCCCGAAGAAGAAGAAGCGGCCTTCTCTTTCACTTGGC
s HiC_scaffold_1  8999549 862 - 233722169 TTCTTGTATAAAAACCCT-GTGTTGCAGCTACTGCTGGAGC---------------AGGGACTCTAGCATGGGTCTTTATAAGATG-TGAGTGAATTTCTG-TAGGGATACTTGGTAAACAAGGTCTCTTTCCAGAGGCTGGGAGTCAGGTAGCTGTAGAGCTGGGAAATGACACGATTGGTATCCCTGGCAAAGTTGCCCTGAGCAGCAGCGCACACCCTGACAGGAATACAGCAGTCATAGCTGT----GCCACCATCAGAA----------------------------------GCCTCTGGGAGTAGGA-----------CAGCACAGAGCCCCTGCAGCTGGTCACCTTGCAAGGGACGGTGCGGGGCTTGCCCATCTTGTTTCCCTGGTAGCTTCTCCACACAGGGGTGAC----AGCTTGGCTGGGATGGTGCACCCTCGGATGGCAATGGCTACCTTCTTGGAGCACTTTAGACCCAAACCAACATGACCACTGTGGT--CTATTGGGCGACAGATACCTTGAACCTGGTCCACTGGCCGGCACGAGTCTGCTTCTGTACT-GTGTGATCTCCTGAGCCTCATTCCTGAGGGATGCTCCCCCCCCACCCAAAGCCCAAGGATCTCAGATTCCTTGGTGGGCAAAGACAGAAGGCCAGTGCCCTCCAGGGACCTGATCTGCATGTCCTTGACCAGCTGGGCCAGCTTGGTGACAGGGATCCGC----TGTCCTTGGTCTTGCCACTGCGAGCCCCACAGCCTAGCCTCAGCTCCTGCCATGTCCATTCCCGAGGCCCTGAAGGCCACTGCCCAAGCCTCCTTGGAAGCCTCTGTGGCCTCCCACATCC--ACCCTTTGGGGCCTCCTG----------CTGTACCAGTGTCATTTGTCATTTTGTGGTTTCCCAAATAAGAAGCACTG---TAATCTTTCATTAGAC

a score=8339
s chr3            95410954 276 + 160039680 CTTCTTAATAGGCAGGGAGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGGCCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACGAGCCCCGTGGCCTCGACAACGGCCACGACCCCTAAGACCGCTGCCGAATTCTCCGCGGAAGCCGCCTCGGCCTCCTAATCCTGGGCCCCTGGGTCCTCCGGGCACCTTCCACTGCAC---CAGCGTCATCCGCCATTTGGTGTTTTCCCGAAGAAGAAG
s HiC_scaffold_1 140732170 212 - 233722169 CTCCTTCATGGGTAAGGAGAAGTGGTACATTTCCTCCAGAGACTTGATCTTCATGTCCTTGAACAGCCATCCCAGTTTGGTCATAGGAAT---CTTATTGTCCTCAGCATTAATGCTGCAAATGCTGTGGCCTTGG---------------------------------------------------------------CCTGGGCCCCCAGGGCCTCCAAGT-CCCTCTGCTGCACTGGTGGCGTCATCTGCCATTTGGTGTTTCCCAGATGAAAAAG

a score=30322
s chr3            95433999 2638 + 160039680 AAGAAAAAACAACCTAGAATGGATTAGTGATCCCTGTGTTAGAACCTATAAAGAGGGTTTGCATAACAAA---TCGTCTGTAGGAAGCATATGCTGATGAGCCCACTAAGAAAGAAAACATTTTAGTAAAATGCTCGTTTTCTTTGCATTTCACTGACGTCAATTTGGTTATGAATCTCTGACGCCGAGAAGGCCGGATTAGGGAAACAGCTGGTTGGCTTCCTAGCTCAGGCTTCCTAGCACTCCTCGGGTCACCGGACTCACTGGCCGAGTCACTAGCCCGGCCTCTATGGCGACTTACTGTTTCTATTGGCCAGTTCTCCCAGGGAGGCTGTCTGGAGACTGACCGCGCCC---ATAGTTTGGGGCGTGTCTTCTGCCCAGGATGGGGAGGGGGGTGGGCGTCC-----GCCATCTTGGATT-CCGCGGTAGCGGTGGCGGCGGTAAGGTGCCTAATCTGCGGAGTGGCTCTTC---------CCTCCCCTCCCCCAGCTCGGTGGCGGCTGCCCCTCCCACC-GAGGGTGGC------------GCAGGGACGGTGCCATCTCGACCATGGCGGCGACTACAGCTAACCCAGGTGAG---------------------------------GCGGCAGAAAGGACTGACAAGTGCGGAGAGCCAGAGCAGAGCAGCAGG-----------------------------GCCGTGGCGTTCGGGTG---TTGGGGGAGGGGTG--TCGAGGAGGCGCCCTGCCCGGAGGACCTGGGGA-------------------------------------------ACGGGTGACGGGTGTTTGGGGGCTCCGTGCCCCAACTTCTG--GAGTAGTGGTGGCGCTTGGCC-AGCGTCTCCACTCTGCCTGCGGTGTTAG-----GGAGTGTTGTGGTCTTTTAACCCTCTGCCAGCTGATGTTCCCC--------TGATGCCTAGTAAGTAACTGGGCAAACTGACTTGGTGTAACTGCGAGCGTAAACTGGGCTATAGACG--GGGCCACGTTGACGTTTTGCAAAGTCTTGCTTGATTC-TACACTTGGTTTACATTTAA---ATGGAAAACTTAGTTCTTTGAGAATCTGCTCAGATTCTTGTAACTC-----------------------------CTATACTTTGAAAT-----TTAGGGTTTTAGCGTAGTTATTAGTGTCTT--GCTGCTGAAGGCAGA-GGTTTGGGTAATGGTAATAGTTCAGGACAGGTCTTTAGTCCAGAACCCAGGTTTAAATCTTGTTAGGTCGAGGT-GGAGCAACTCCTGTTCTTTCAGAAAAATGT--CCCGCGCCATTTGTCTGTGGACGTCCTCTTGCTTGTTTGTCTGTCTGTCTCTGTCTCTC-GTTCATCTTATTTTG------------AGTCTTGTCTCAT------------------TCCAGCCCCCGGTTGACTTTGGATCACTGCAGTCTCCC-TCTCAGTCCTTTCT--ACTGTATT-CAGTTACATCT---TAGGAAGTATTTCATTTTA---------GTTGGGCTAATTTACCTTGTTATTTTCC----AACAAAGTAAATCCATCATTTCCCAGAA--GTCTGTATC---------------------------ATCGAAGAGTTTGGAG------GGAGGGTTGTGTAATATTGG-------TCTCTGCTATTTCACATTGAACTTTTAAATTTTATCTTGTTAAT-------GTACTATATTACAGTAACAGGGTACACACACGTATGTATATACATACACACAATAGCTGAAACACTGGGAAATGTATTG--TTTTCCCATTATTTTTGGAAACAGCCTTTTTTTTTAagagagagagagagagagagagagagagagTcctagaacttatatgtagcccaggttggcttcaaattcatgTGTCAATATCAACTTTAAA----AAAAAtatttttaagctttagaaattatgtatatgataatgtctacttgtgagtgcaggaatgggaggagtccagaatagggtgttggatcccctgcagcaagagtttcaggcagttgaaagccccgtgatgtggatgctaggaactgacattaggtcctagaagagtaacacatactcacaactactgaaccttcctttcagccccTGAATATCAGTTTTTTAAATCCTAAATTATTATTTTTTTTACATGAAGATGAAGTAAATTGTCAGGAAACTATTGGAATATTTGATGAATTATAGAATAAAACTATACAACT-GAAAAATGT--TAGAGAAAATCAGACCTTGTAGCAAAATAGCCCATGTCTGA-TTAGAGTAAACAAGATTTCAAACTGATCCCATGTTGCAAAATCCTTATATAACTCT--TCAGACTGCAAAGTGTCTCTCTTGTTAA--GGCC---GTAGAGACACGTTAG----TAAGTCAGAAGCTTTTCT----------------AGCTGCCCTGTTCTG--ATTTTAAAC--CAATTACTAAAACAACACTTTCTTGACCAAATAGTCA-TTTCCTTATCAATATTAGCTTAAGTCTGTAAGCAGGAAATAGTAATTTTTTTCTAtttttttttctgagtggggaattttgagaggctggcctgcagtgttctgtgaagatcaggctggccttgaacttgcagtggtcttcttgcttctatcttcaagtgctggaatcactcgcatgtgccatcctatataaactatcaa--aactttttaAAAAGTACGATTTAAGAATCTTTTTTAATGAAACAGttgtt-tgtttgtttgtttgtttgtttTGACtttggtttttcaaggcagggcttctatatgtatccctggctgtcatgaaactcactc-tgtagaccaggatggcctccaactcaag---atctgcttgctcctgcctcctgagtgctgg-attaaagctgtgagtgtcatcacC
s HiC_scaffold_1 140546865 2525 - 233722169 AAAAATAAGCCACTTAGTCTCCATGAGAAGTTTAGGCATTAGAACAGCTAGAgaagatttacaaaaaaaaaagtcttctgtATGGAGAATACCCTTGGGAATCCAAACCCATAACAAACTTTTCAGTAAA-TACCCGTTTTCTTCGCCCTTCACCGACGTCA-CTCGGTCACTGACCTCTGACGCAATGAAGGCTGGATTGGGCAGGCAGCTGGAT---TTCTTAGATC-------TTTGCCTGCCTCGG-------------CTGGTCCGG---CTGGCTCTGCCCGTCTGttgattttgcattttcattggtCAATTTTCC-AAGGAGGCCGACGGCGGATGGACCCCGCCCCCCATGGGCGGGGCCTTTCCGCCCCCCCGAGGCCGGGATGATGGGGGTTATCCTAGCCGCCATCTTGGATTTCCGCGGTAGCGGTGGCGGCAGTAGGGCGCCCCTTCTGGGGAGTGGCTCTCCTCCCCTTCATCCCCCCACCCCGCGCTCGGTGGCAGCGGCTCCTCCCATTGGGGGGTGgcgcggcggcggcagcggcggcggcggcatcTAGGCCATGGCGGCAACTACTGCTAACCCCGGTGAGGAGAAGTAGGACTGGGTCGCCTCTAAAGGGGGAGCAGCTGAAGGGGCTGACAACTGAGGAGCCCAGAGGCTGAGCGGCCGGGGCGGCGACGCGAGGCGCTGGGACTGGCTGCGGCGGCGGCCAGGCgactgtgggggaggggaggttGGGGGAGAGGCCTGACCCTGGGGACCCGCGGAGACCCGGGTAGACCGGGATCGGAGACCCGGGCAGACCGGGATCGCGGGCGAGCGGAACTTGCGGCTTTCCAGCCCCAAACTCTGCTGAGCAGCGGGCACACGGGGTCGGGCGCCTGTGCTCTTCGGACGGCATCTGGTCCTGTGATGTGGTTGTCTTTTAACCCTCTGCCGGCTGAGGCGCCCCGTGCCAAAGGACTGCTGGCAAG--AGTGGGTCAGTTTACTTGGAGTAGTT-----------CGGCGTCATAGCCATTGGACCACGTTGCTGTTTATCAGAGT-GTGTGTGCTCCAAACACTAGATTTTCGTGTAAGATGTGG-------CGTTCTATGGGTTCATGCTTATGTTCTCGGGGCTTTACCTCCCGCCGCGCCCCGCCCCCTCGGGCTATACTGGGAGATCTGCGTTTGCGTTTTAAGAGCCCCCAAAGCGTCTTCAGCTGCTGGAGGCGGAGGGTTTGTACAGTAGTTGGGATTTAGGATAGTTTTTTCGTTCAGGGCCCCACTGCAAATCTTGGTGGGGCTACGTCGGGGCGATTTCCATTCCCTCAGAAAAATTTAGTTCATGCCGTTTTGCCgt-----tcttctctctttttcat---------gCCATTTCTCAATGCAcattaatttgaaaaatgtagCCAGTCGTGTCTAAGAGATAGAATGAGTTGTGATACAAGTCCAGGGAGA--TcagatcttttgaatttctagtCGCAGACCTCTCTCCACTACGTTatggttatttttttctagaaagtatttcattttatgggACTACGTTTAGTTTGCTTAGTTGGCCATTTttccctaaataaataaaatgtatccaTTCCTAGAAATGCTTGTGTttgataactttaaaaaaatccaaggGAAGCCGAAGAGTGTGGGGGTGAGAGGAGAGAGGTGGGAGGTGGGAAAGAATTTGCTGCTGTCCTGAAGTGGGAGTTTGATTTTCTTCATGTCTCTGAAGGCGGTATTATTTCGCA----------ATTCTCAGGTGTTGCTAT----------TACAGTTGGATCACTATGAAATTTACTATCTTTTCCCCATGTTTCCGGGAATAGAACTGTTT--------------------------AAAGAAATTGTTA------ATTTG---------------------TCACATGTCAATatgagtttttaatctttaaaacatttttaag------------------------------------------ggaAAAGGAG---------ATAAAGT------------------------------------------------------------------------------------------------------------------------------------------------------TAATGATTTTCT-----CGAGGAAGAAG----------------------------TGCTGAGTGAtagaataaaattgaacagtTGGAGAAATGCTATAGAGAAAACCAGACCTTGTAGTAAAACAGTCAGTCAGTGAGCTAGGG---ATAAGATTTAAAACTGATCACACAATGCAAACTCCTTATATAATCCTAGTCAAATTGCAAAGCATTTCTTATAAGAAACGGCCAGGGTAAGCAAGTTTTAGTGCATATGTCAGAAGCTTTTTTCCAGCTATGTGGGTGGggttactttgttttgtttttttaaacaacagtCACCAGAATGACAATCTCTTGACCATATTTTCAGTTGGCTGATCAATATCACCTTAAATCTCTGAGCAGAAAATAGCATTTTTTGT----------------------------------------TGCAGAATCCT-------------Tggca--------gtagttttttttttgttgttgttgtcacgT-TTGG--TCCTTGGC---TGCTTGCTTCTGAAAATTACAGACTACCTTTTTGGTAGATAA-------------TTTTTGgttaaataatttttccatttcttcaaaggttttattt---tttatttttttggtacagggttTTGCTGTATAGTTTAGGGTGCC-----TCTTatttgtgtagcccaggctgacctaaaactcaaggcagttcccttgcctcagcctcctgagtgctggaattacaggtgtg-----caccacc

a score=11986
s chr3            95448283 354 + 160039680 gttttGATGACCCCTGGTGTGAGTATTTCTTTTAGCCAGCATCATGACATTGATTGCTGA------------------GAATATGGACGATATTCTTTTACGACAGAAATGACATCAGATGTACCATCGCTGGGTCCCACCATTGCTTCTGGAAACCCTGGACCTGGGATTCAAGGTGGAGGAGCTGTTGTACAGAGGGCTATTAAGCGACGGTCAGGGTAAGTTTGAATGT-TTATCATCCGTGTGTTTCTCTTGTACCATCAACTTTTGAGTTAGTTGCTGTTGGCTCTTGTTTATTCCTGACCACACATCTAATTGATTACTTACTATACTGCTGTCACATAACTAAAACTAACTCTTAGTCCCTGGATT
s HiC_scaffold_1 140577244 353 - 233722169 GTTTT--TAATCCCTAGCTTGAGCTTTTAATTTAGCCAACTTCCTGATACGGATTATAAATAaggattttcactttttaaatgtgtattttattttttcctgatagAAATGACATCAGATGTACCATCATTGGGTCCATCCATTGCCTCTGGAAATCCAGGGCCTGGGATTCAAGGTGGGGGTGCCATTGTCCAGAGGGCTATTAAGCGTCGACCAGGGTGAGTGTGAGTATAGTGTCAGAAATGTCTCTCCTATAAACCAAC-----CTGATTTAATTGCTGAACCCACTTGCTACTTTTTATCCTCTCACTTCAGCTGTT-----CTTTACTGTTGCCATATAACT--------TTCACAATCCCTGAACT

a score=14022
s chr3            95460255 667 + 160039680 TTTGTGGTGCTGGTCCATTATCTTTCCCTGTTGAGTAGTTTTATTTATTTCTAGTTTTTATTTCAGAGCGGAGTAGATATAA---GTACAAGGGTTTGAATTAATCCCTGCCCTTTCTTTTCAGATGCGATGATGACCAGATGTGTAATGACAAAGAGCGGTTTGCCAGGTAATGTACT--AGAATTCTTGTCCTGGTTATGGGATCAAGCAGTCTA--AATGTTGGATTTAAATTTTATCTAGGTGAGAGTGAATTTCTCTGGTTAGTCT-CCTCCTCTTCT-----GAAGTTTGAAACAGCCTGGAATTTATGCATGCTCAT------TGACTTGAAGCTAG--------------------------GTATATTTAACATAATGTTTCTCT-CATGCATGCAAGTTTTAGTAATGTGTATATTG--CATCTACAGGATCACAAACTGTAGACTTCTTGG--GCA--TATTAT---ATTTGTACAAATACAGAAGAATCTTTTATAGAAAATG-GTTTATTCATT----------------------------TAAATGAGTTTTTATTCTGGATACCAAACTTAAATTTGTTTAAGTAA-CTGTCAGAAGATTATGAAATATACTGATTTTACTTTTTTTTTCTCCTCCCACCCCTGATTTTACTTTTTATTAAAGAGT--AATCATTCTCAACTCATATACTGGTTTTACTTTTAGAAAATT-CTTGCTGTAAGTTACTCTTTTAAAAAGA
s HiC_scaffold_1 140584030 695 - 233722169 TTTGAGGCACTGGC------TTTTTTtctgttgaatattttgttttcttg-----ttttatttcagaatgaagtaaatataatgaatataatattttgaattaataagtttttttctccttcaggtGTGATGATGATCAGATGTCAAATGATAAGGAGCGGTTTGCCAGGTAATGTAATACAGTATTTTGGCCCTTGGTATGGGACCAGGCAGCCTATCcacactgaattttaattttacctGCATGAGAGTGAGTTTCTGTGTCCTATATATTTCCTGTTCCTGGTGGAACTTAGTAATGTTGTTGG---CGTAGATGTTCAGGTAACATGGCTTCAAACCAGTCACATCTGTGTATCTGTGTTTGTCTGTTTATCTTATGCAGTGTTTTTCTGGGTATGTGATAACCTTAGGAGTGTGTTTGACAGCCATCCACAGGAACACAAACTATGGATTTCTTGATTGCATTTATTATAAAACTGTTATAGATAATGGAAAAGTCTGCATAGAGAGTGAGTTTATTCTTTACAGAGTGACCATAGGAAACTTTGTGGATATTGGAGTTTTGATT----AAAATATActtacatttacttaaataacCTGTCAAAA---------------TGATGATACTTTTT-------------------ATTTCACCTTTTATTAAGTAGGTAAATCTTTTTCAACT-------TGGTTTT-CTTTgagaaagttaatttttatttgtagctATCTTAGAAAAA

a score=27618
s chr3            95465939 1518 + 160039680 TGCCACCCATTCTTAA-AGTGTTTTGTTTTTCTGGAAGAGTTTAATGAAAACCTTTGTCTTTCTTCGAGGGAGGAGGGATTGACATACTGGTTAAACCATAGAAGAAATGCTAAGGTGCCTAAACCAGAGTTCATTAAA---TTAGGAGTGTGTCAGTGATAGAGAATATGCAGGAAACCTAGCTCTTGATTTTTATCATGTGATCATGTCAAgctacacggctcggtgtatggctttcactccaagcctgagaactcaggttcttcctcacagggtagaaggagagagccaactcccgcagtcgccttctgacctgtggcacacagacacacTAAGTACTACAATGGGAAAAATAAATCTTGTCATAATTTGTGTGTGTGAATGTGTGTGTGT----GAGGAAATTATATTTCTAATCCGTTGTTTGAAGCTGTGTAATCTAGTCACTAGTAGACAATAGCGAATGTGAATAAGTGTTTCTTCCCAGATTGGCAGCAGTTTATAAGAATGATAATTCTGATAATTCTGAATTTCCTGGTTGGTTCTTGTTCACACTCTGTAT--CTTTGGTTTCTGTAGAGATTGTTTGACAA-AGTGTTTTTTGTGTTGAGAT------TATGTTAGTTTCTAATTGTCCTTGA-CTTTCGACTTATAATTTACTTGTTACA------AAAATACAGTTCTATAGGTTCT---CAAGGTTCTTCCTTGTATGGcctttcctcactttttctgtatccatttcatttcttc-ctttctttccttttcattttgcatttcattttccctccctcgctttcatctgccttttcttctttcctttcttcctttTTATTTTAATTTTCGCTTAGTTCATCAATTCTGTTTTTAGGTCGGATGATGAGCAGAGCTCTGCGGATAAAGAGAGACTTGCCAGGTAGGAG--CTGTGCTGTTTAGC---ATGAAGCACATACTGC----CTTCTTACCCTTTGTCTAA--CCCATCTTTTTTTCCCTTTC----TGTATTTTTCTCTTACCTGTGGCAAAGGAGGACATGAGGTTTTACAAGTTGGGGTACAATAAGAACTTTGGCTTCCCCAACAGGAAGTGGGTGAATTAag----------ccagg-----------------------tatggtggctcactcttttgatccctgcatttg--------------ggaagcagagtggagttctgtaagattgaggccagcctggtttacaaagaaattctaagacagagaaaccctacctGAGGGTGATGGAAGAATAAATTATAAATTACTGTTCATCTTTAAGATTTTTATTTTTTCTTTACTTCATCACTAAGTTCCACAG----ATAATGATTTAGAAGTAATGTGGCTGTGTCCACAGATGCTTTAACAGGCGCATACTCTCTCAGAATACCGATAA--TTACCATAGTTCTATCAGAATACCGATAATTACCATAGCTCCCAGAATTTAGGCCATA-GCACATACTCTG------------------------ACTTCCCTATGCCGATTCACAGTCTAGATTACTATG--ATGGTAGAAC--------------TGATTGAATCCTTATAATTT-CTGAGGAAAGTTTTAGCTACTTTGGTATGACTATTT
s HiC_scaffold_1 140586219 1363 - 233722169 tgccaCTCCCCCTTTATAGTAATTTAGTTTTCTGGAAAAATTTAGTAATAA------TCcttaaaggagggaaggggagttG------TGGTTATTC--TgcaaaaaatgtcaaaataactGGATCAAAATCAAGAATAACTTTAGGAACACATCAGTGATAGAGAATATGCAAGAAATCTAGCTCCTAGTTGTAGTTA--------------------------------------------------------CTCTGGTT------------------------------------------------GACTATTTgtgtata-----------------------------------------agtgtgtgtgtgtgtatgtgtgtgtgttcagggaGAGATTGTGTTTGTGATCCCTTGTT-----ATCTTTAATT--GTTTTCATTATAGAATGGTACTCGTGAATAA-----TCTTTCCAGATTGGGAGCAGTATATGAAAATGGTATTCCT--CAGTTCC------TTTGGTTGGTTCTT---CAAAGTCTGTATATCCTTGGTCTTTACAGAGATTGATTGACACTAATgctttctgtattattctaccatATGTATTAGCTTTTTATTTGTGTTGATCTTTTGTCTTATAAGTTACTTTTTGTTTACCATAACAGATAACTTCGTAGATTACAGGCAAGGTACCTGCCCATAT-----TTCCT-----TCTCTGCATCTGTctgatttctttgctttcttctttatttcttctttctttccttttccatttct-gtatttatcctccctccctccttcccgcccttcctttttattttaattttagcttaGTTCATTAATTCTGTTTTTAGGTCGGATGATGAGCAGAGCTCTGCGGATAAAGAGAGACTTGCCAGGTAGGAGAACAGTGTGTTTTAGCATGATGAAGCAGATGTTGCTGCTTTTCCTATCCTTTTTCTtactctctcttttctttccctttctctttgtatttttc-cctaTCTGTGGCAAGAGAGGACAagattttttagaagtttgagtGTTACAGGAACTTTGGCTTCCCCATCAGAAAGTGGGTGAGTTGAGGGAGCTTTACTTaggaatttaagaaatttttattaaactattttattttcctcttttttttttttttctttttcggttttttatcggtaccaggg---------atcgaactcacgaccgcctg------------cttgcaaggcagg--------agcttatgccgctgagctaa--------------------atccccagccccttattttccTCTTGATCGCAACAC----TTTCACAGAATTAAAAGGATTTAGAAATAATGGAGCTATGC---CAGA--------------------CTGTCAGAAAACCAATAAATGTACTGTAGTT--------------ACAAT-----TAATTTCCAGTATTTAAACCTCAGGCATTTACTGTGTACCTCTCTAGAAAGctcatttatattttcctgtGTAGACTCACAGCC----TTACTATGTCACAGTAGAACTAGGGTTGCTTTGATGATTAAAACCTTGCAATTTACCAGAAAAAATTTTAGCTGCCTTGGTTTGGCTGTTT

a score=35043
s chr3            95469579 1595 + 160039680 TATACTATTATTTCTTTCATAAGCTACTGGTTCATTTACTTAACTTTTCAAAAGTTGGTCATTTTATTTTATAGCCTTCAAATGTTTTAACTAGAA----------------------AACATGTGGTCAGTGAAGCTGAGATT--TATCCCCTTAGGAACTTAAATGAGTGAAATCAACATTTAAAAAAACACTCACTCTCAACCTTACCCCtgagacaggatttctgtgtgttgcccttgctgttactttgtagaccaggctggcttagaactcagtgatccatctgcctgcctctgcctcatgagtgctgggattaaaggcatgcaccaccaacaccttgttTTAATTATTTCTTAAACTATTCACTCTGAAGTGGTGATTTAATGGAAGTGGTTGACTGGAGAGGCGATATGTACTTGTTCTTTGTCTAGACTTTGTTAGTTT--GTTTCATTCTTACTCTGCATGAG--GTTGGCCTGCTTGGCTT------CTGAGATTTGAACATCATCAGACCTAAGTTACTGCATCCTTCAGCAGCTGACCAGGTATCCATATCACTCTC-CTGATACCAAAGGAACAGATGTGACCACCTAGAATGGAGCCTCTTTCTCTTTTTTTATGCAGGGAAAATCATAGTGAAATAGAACGGCGGCGACGGAACAAGATGACAGCTTACATCACAGAACTGTCAGACATGGTACCTACATGTAGTGCCCTGGCTCGAAAACCAGACAAGCTAACCATCTTACGCATGGCCGTTTCTCACATGAAGTCCTTGAGGGGAACTGGCAACACATCTACTGATGGCTCCTACAAGCCATCTTTCCTCACTGATCAGGTCTCTGGATCTTAAAA------------CTGACTCTGGGTATATCTGTTGAAAGTTTTGGACTAATTTAATGGTTTTGTTTGGTTGCTTGCTTGGttttttttggga--gggtctcatgtagcccaggctgacatccaactcagtatattgccaaCATGTGCCACCATGTCCAGCTTCAGGAGAGTGATTCTT-----CAGGAGACA--------------------TCAGA------------TGTAGAAAAGTGAA-TTCAGCCCTTAGCTATAA-GTGATCAAGTATTGGGGGAGTGAGAA-TAGATAAATTTAGTTGTGAGAACTTATTTAGCAAGGTGTCAGGTATTTTAGAACTTGGCTCATACAAATGACCTGTGAAGTG---AAAGAAGGGTGTG-TCCCCAGAGAGGTTGCCACACTC-ATGGATCAGTGTTCCTTGGGTTATATTTCTAGAGCATGGAAGAAATCTGCCTCACCCTTGAAGCAACTTTTAGTCTTAACGATGAGAGACGTGTAGTAAACAACCCCTGTTGCTCCATGATATGTTTTGTTACACTTGATATATCATGAGGAAAACAGAAAGGGCAGAAATACTTGCCATCATTCAGGAGCCCCATCTAAGAGTTATCTCACTATTGCCAGGAGAGAGAACTAAATGTGAGTAGAGTAAACGGGTGAGTAGTAAGATGCCTAAGTGAAAAACGATGGGAAGAGGCATGCGGAAAAGAGCCGGTGTCTTTGTTAATAGTTTGTGTGT-----GATAGATATACAATGGTGGCATGTCTAA----CTTTATTTAGTCTCTCTAGACTTGACTGAGAATGACTAGGAAAGACAAGT
s HiC_scaffold_1 140588409 1434 - 233722169 TATACTGTCATTTCTTATATCAGCTGTTGAGCAACATATTTGAACTGACAATAGGTGGTCGTTTT--TTTCTAGTCTTTAAATAATTTGGTTAGAAGAAAAAGCCAGTTTAGTCAATAAACATGTAATCAACCAAGGTGAGATTATTTGTCTCTCAGGAACTAAA-----TTCACTCAATATTTTTAGGTACTgtcattt-----cttat-----------aattttt-----------ttgttgttgttctg----------------agggaacagtaatttattt----------------------------ttgtagGCA--------------------------------------------------GTGACGTTTCCAGGAGATAGATAGAGTTG--------TATCTGCTTGTTCTGTTT----ACCTTATTAGCTTCTGTTCCATGCTTGTTCTGCATGAGAAGTTGGCAAACCTTACTTTAACTGCTGAGACTTAAGCATCATTAAACCTAAAT-ACTACATTCTTCAGCAGCTTAGTTGGTATCTATATTGCTCTCTCTGCTACCAAATGACCAGATGTGACCACCTGGA-TGgggcttctttctctcttc--atgCAGGGAAAATCATAGTGAAATTGAACGGCGGCGGAGGAACAAGATGACAGCTTACATCACAGAACTGTCAGACATGGTACCGACCTGTAGTGCGCTGGCTCGAAAACCAGACAAGCTAACCATCTTACGCATGGCTGTTTCTCACATGAAGTCGTTACGGGGAACGGGCAACACATCCACTGATGGTTCCTACAAGCCATCTTTCCTCACTGATCAGGTCTCTGGGGCTTGGAACTCTGAGAGCTTCTAGATCTAGTTGAATCTGTTGAAAATGTTGA---------------------------------------Ttttgggcctggg----atatagctcag--------------tagcacagtgcctgcctgg-----caagtgcaggatcctgagtttgatttctggtaccaaaaaataaaaaataaaaagaactcacctcagaaagaatgcacaccatggaaaaattaatttcaggCCTAGGCTGTCATATTAGTAGGTATTGGAGTGGtaagaaggagagaaa---agttgTG-GAAGCAATTTATTAAACTGATGGATA----GAAACTTGCCTTATA-AAACAACCTATGAGGTGGAAAAAGAAGAGTGGGATCCAGAGATGGATTAACAGGTCCAATGTATTAGTTCTTTTC---CTTCACTTTAGAATTACTGTAAATCTTTTTCTGAGCCCTGCAGCAGCTTCCAGTTTTAGTGAAGGGAGGAGTCTAATAGGGAGCCACTGTTGCTCAAGAATGTGCTGTGTAACA-TTGATGTACTGTGAGACAAATGGAGAAGACAGAGTTACTTCCTGCCTTTCAGCCCTTCAGTCTGAGTTTAAATATGCAAGTGGCCGG-------------TGTacacaaactaaa-----aaataataagatgcCTATGGCAAA-------GAAATATGTTTCC---------------CCCATACTAATAATCTGTGTGTGACTAGATAAGTAGATACTAGAGGGATATCTAAAAAGCACTAAATGG-----CCAGACTTAAGTGGGGGTGGTTAAGGTGGAgaggt

a score=24408
s chr3            95474173 847 + 160039680 ATATTCTGAACAAGTTGAGGGAGGCTATGT---------TTGTGTTTATAAGTTGGAGTGGAAAGGGGGAAAG--------------TGAGAGGCTCCTAACCCTAACCCC--------TGCCCCCTCCAGAAGTCTTATCATTTAATG-TAAGCCTTTTTATTTTCCTTT-GAGTGCT------------AAGAGGCAAATAGCAACTTAGAGAAATTGCAGGAATACTTACTGTAAAAAGTTTGCCAGTGGATAT-------TTAGGGTAGGAACCCATGGC-TTATATCGTGGTATAAGCCTGTGATTCCTAGTGGAGCAGTGCATATGTACCCAAGGATCTTGCTGCTTCCCATGATCAGTTGTGTATGTTTTTTCAGAGTTCACTATTAACTTTGGTTTATTTT-CTTGACCAGGAACTGAAACATTTGATCTTGGAGGCAGCAGATGGCTTTCTGTTTATTGTCTCCTGTGAGACTGGACGGGTGGTGTATGTCTCTGACTCAGTGACTCCCGTTTTGAACCAGCCACAGTCTGAATGGTTCGGGAGCACACTGTATGATCAGGTGCACCCAGATGATGTGGATAAACTTCGAGAGCAGCTCTCTACATCAGAAAATGCCCTAACAGGTGAGAGCTGGCTGGACAGCAGATATGTGGGGGAAAAGTCTTTATTTCACTCAAGTAGTTAAGATATTTAAGCCCGAAAAACCaaaaaaaaaaaaaaaaaaaaaaaGATATTTAAGCCTGTACATTGGTTGGTTGAATCTAGCAAAGCTTCTAAAATTTTTTTCCTTAATGACTATAATTGTTTTTAATTCACGTGCAAAATATCCACTCTGTAGCTTATTCTTAGAAAATATTTCATCAGTGCTTGTGTTCTTATAAAAGCTCATTT
s HiC_scaffold_1 140591683 830 - 233722169 ACATTCCAACCAAATTGAGGAA--CCAAGTGAGGAAGCATTGTATTTTTAGTTctaagaagaaagaaggaggggGTTGCATATTTGGTGAGAAGATCCTAAAAAGAGACCAGaaaggaatgga---tcaaaaagtcAGTTATTTTGCTGATTAGCCGTTTTATTCCCCTCTCGCATCCTGagataaagaggaagaaatagataGTGACATGTGGAAATTGAGGAAATACTG---GAAAAAAACTTGTCAATGAGAGTAATTACTTTAGGGTGGAAATCTGTTGCAGTGGATC-TAGTATGAGCCAACAGTTGGTAATGGAGATAAACATACGACCTGAAGAATC---ATACTTCAAGTAAATAGAAATATTTGGGTTTTAAGAATtcagtattaatttttatttcttttgtttggcCAGGAACTGAAACATTTGATTTTGGAGGCAGCAGATGGCTTTCTGTTTATTGTCTCATGTGAGACAGGCCGGGTGGTGTATGTCTCTGATTCAGTGACTCCTGTTTTGAGCCAGCCACAGTCTGAATGGTTTGGCAGCACACTATATGATCAAGTGCACCCAGATGATGTGGATAAACTTCGTGAACAACTTTCCACGTCAGAAAGTGCcttgacaggt--gagttgtgtgGATGGAAAATGAATGGG----AAgtcc---tttcttttgtatttttctgatgCATAA------------------------------------------AAGCtcttaaattagtttttaaaatct-gtagtaTTTCTAGA-----TTCTCTCAAT-ATAATAAGTCCTTTTTATCCATATTCAGCTTACCTACTTTGTGACTCATT-TTAGATAAGGATTCATTAATGATTATGTTAATATAagcattttttt

a score=13868
s chr3            95475857 476 + 160039680 TAGTAGTTTCCACTCCTGCTTTACTCAGTTCTT----GTGCCGTTTTGGAGCTAATAGTGAGATTCCTAGATGAGGACGCAAGTAGTTTAGGCTTCAAGAATAAAGCATCTCTG------------TCATAAACACG-----GAATCTGGAAGGCTTGGCTGGACCCAAGCTTTGCCGC-GGTGTCTCCTTCCTTTCCCATCCACAAGAAGTAACTTGAGATTGCTCTCTACCTCCTTGACCAGGGCGGGTCCTGGATCTGAAGACTGGAACAGTGAAAAAGGAAGGCCAGCAGTCTTCCATGAGGATGTGCATGGGCTCACGAAGGTCGTTCATCTGCCGCATGAGGTGTGGTGCTTGGGATTGTGTTGGG--TGGGAATAAGAGCAGCTAAGG--------CTTCCATTTCTGTCAGAGGCATTAGTTAGTATCTAGTATCTAGAGCTACGTTCCTTGCCACAGTTGGATTACATTTAACTTTCAAGAACCAGTTGTTTTACCATA
s HiC_scaffold_1 140595920 486 - 233722169 TAGCATACTCCTACCTTTCCTTGCATAGTTATTTTCCATGCTGCCTTTGAACTTACAGTGAGATTCTTAGATTAG-ATTAAAATACTTTAggcttaaaaaaaatctgttttctacTTGGCCTGTTCTCATAAGGAGGTTAGAGTATATGAATGGGATGCCT---CCTTATCCTTGCCTCCAGTATTATTCTCCCACCCCACTCAAAAGAACATGCTTCAGATTGCTCTTCCCATCCTTCTTTAGGGCGTATCCTGGACCTAAAAACTGGAACAGTGAAAAAGGAAGGTCAGCAGTCTTCCATGAGGATGTGTATGGGTTCAAGGAGATCATTTATTTGTCGAATGAGGTG-AGTGTCAGGCAGAGCATTGTGATTTGGAATAGGAACAATCAAGAGTCaagcttttttatttccttcagagGAATTAGC----------TTTTTAAATCCAAGTTT-------CAACTGGattaaatgtaattttcaaaacCCAGATGAAGTAACATA

a score=16731
s chr3            95480092 1098 + 160039680 TTTTCTTGTTAC--------TTACTAGTTTTCAGTGTGTAGTTGGATCTTC------TTATTCTGTTGTTACTG--------TTTCCCATAGCCCAGC---AATTTGCATCTTCTGTTTGTT---GACAGGTGTGGTACTAGCTCCGTGGACCCTGTTTCCATGAATAGACTGAGCTTTTTGAGGAACAGATGCAGGTAAGATCTTAGGCAGTGGAGATCAA-GAGATGGGA------------TTTTTACCT-----------------TCTCTACTGGCTCTCACCTTC---TTTTACCTCACGGTCACTTACCGTCTCACAATGTGTTTCTGAACTTACTGAATAGATCAATCCATCCATCAATTGATTGACTGAttggtttttctgtgacagggtttctctgtgtagccctggctgtcctg---------------aaacttaatct--gta--------gaccaggctggtcttgaactcagagatcttgagtgctgggatcaaaggcatg------caccaccctgcctgTATT-GTTTCTGAACTTTAAAAGCTTC---------TCTTGTTCAAGGAAGTT--------------GCTTACTATGTTACCT--ATTTTTCTTGTGTGT-----------TTTATTTCAAC-----AAGGGCTGGTGCAGCATCCACACACGTACCAGTaataaatggataaataaataaataaataaataaataaatGCTTTTAAAACACAG-GTTTCCTTTGTAGAATTTCACCCCGGATTCCTATACCTTTTCTAGGAATGGGCTTGGCTCTGTGAAGGAAGGAGAACCTCACTTTGTGGTAGTCCACTGCACAGGCTACATCAAGGCCTGGCCACCAGCAGGTAGGGAAAATATACAGTAATTTCTCTCTGGTATATTTGGTTACATAAACAATTGGCAATATGTTACTAACAGTTAGCAATACTATGTACCCCTT-TATGAAATGTGCTTAAGAATAATTCAAAAGATAGATAGACAAATAAAACAGACTCCCTCTCATCTGTTACCAA---TGTTATAGTCTATTTGAGCATATGGATTACTAAAACATAAAAATGACTCAATATTAGCTTTATTACAAAA----------------TGCTGTAGGtt------tgttttcgaagcagg-----tttctctgtagccctggctgctttggagctga-ctttgtagacca----agcctc--atttcca---------ctgcctctgtctccccagagctggattaac
s HiC_scaffold_1 140598226 1207 - 233722169 TTTTCTTGTTAGGAACATTGTTAGGAGTGTTCTGTGTCTAATTGTACCCAAAGCAGGTTGTCCTGTTCTTACTAAGAAAAGTTCATTGATAATGTAGCGTAACTTTTAATCtccttgttctttaaaataggtGTGGTAATAGCTCCGTGGACCCAGTCTCCATGAACAGATTGAGCTTTGTGAGAAATAGATGCAGGTAAG--------CAGTAAAGACCAAAGGGATGGTAGAGAGCATCCCTTTGTCATCTAACTTACTACAGCTCTGCCTTTAGCAGCTTTCATCTTCATCCTTTACgtcatagttacttttttttctggaatattttcCTAAGATT----------TAAATCTTTTC-TTGTTTGTCCTGCTTACCTATTTTCCT-----CGTGCTTCAGTCAGTACCATTAGTTGTTTTACTTGGCAAGGGTTGAAAATATGGTCTAAGTATTTTTGATGATCTAgttaattctgttttcat---ttttatttgtttggtttgttgGTATGGGATTTTAttcctttggttttatttatttatctatttttggtgtcttgagacagaatcttgct--aggtagttcaggctggccttaaactccctgTGTAACCCcaactgaccttgaatttgcagggATCcacctacatcagcctcccaggggctgg----gatttcaggtgtgtacca-ccatgcttggcctatTTTCTAAACACTCAAGAGCGGAAGGTC-----AAAGGCAGCATTTCTTTTGTAGTGTTTTCTCCCTGACTTTTGTAACTCTTCTAGGAATGGACTTGGATCTGTGAAGGATGGAGAACCTCACTTTGTAGTTGTCCACTGCACAGGCTACATCAAGGCCTGGCCTCCAGCAGGTAGGAAAGTTCTTCAGAGAGCCC---------------------AAGAAAGTTATCAGCAT----TTAGTTGTTACATTTATTGTGTAGCTGGTATATGAAATGTAGTT-GGTTTAAGTTGAAAAAAAGCGAGATAA-------AGACATCCTCACATCCAttattggttttattatattctaGTTGGG-AGATGGGTTGCTAAAACTTGAAAATGACTCATTATTGGTTATATTAGAGAatatgggtttttgtttttgcttttgtttttttggtatttttgagacagactgtcttgctgtgcagttcacgctggctttgaactcacctttgtagcccacgctggcctcaaattcccaatgatcctcctgcctcagccttcccagtactgggattac

a score=47336
s chr3            95482991 3165 + 160039680 ATTTGGGAAAAACTTAATATTTGCTctctggcatttgtg----------aatagtttaacctatggcaagtttcttgacctttacatgtttttccttatctgcagtccag--gtcatacatcctgtatatcatcatcgtgagt--tagatttagtgtaaggaaagaacaccccagtgcctggcacatGCTCTATAGCCAAGAAATGGGAATTAATAATTGAGGAAATATTATGTATAGTGGCACATGAACTGTTGAGTTAACTTCCTATGTAAATCATACCTTTACTGTATGTATGATCTTTGATACTTCTGCATAGCTGTC------------------CTAGATAAGAATGAGAGA------TAAAGACATTGTGAGGGAT-----------------------GAACTCTTATTCCCTTTTTCTGTGGAAATGAATATCTTTTGGTGTTGGGACAATTTAATTTTTCTTTACTTTAAAAATCACTGGTTAGGCAGGAATATTTACTTCTCTGTGTATGATATAGTCACATAGCAT--------AAGTAAAGTTTAT--------ATTTTTAGACTCCTTTGATTGGGACTTGCATTTTCAAATTTCTTAAAATGGTTAAAGCCAGGTGTGCTCATATGCCTGAAATCCTGCATTGAAAAGATGAAGAGTCCAGGTTacacacacacacacacaca---cacacgcacacactcacacGTGTGTCACA------TGAAACAGTAACTGGTTATTTTATTAAATCT-TAGCATCTTCATAGGGAAATAG-----TGAGTCTTCAGTGACTTGCCCTTAAAGGGATTTGAATTTGTGATCTCTCTGAGTCATTCTCCTTTTTCTTCATGAAGGTGTCTCCCTCCCAGATGATGACCCAGAGGCTGGCCAGGGGAGCAAATTCTGCCTAGTGGCCATTGGCAGGCTGCAGGCAAGTATGAGTCTTC-ACATCTATGTCCTTTCAGTTTAGGGAAAAAAAACTTTTC---AGATTTTATTTGTGGTAATTATCTTTTGCTCTGTGAATACATA-GAAAAATTCCATAAAACTC--AAGATCTAAAATAATGTGATATTTATAATAAACATTGCTATTCTCAGACTTAGCTAAAATCAAAAGCATG---AGAGAgggtggtaatcttgttgttgttgatcttggtaatgactcgtccc----tgttacctag----gcctcgagctccttggttcaagggatcctccccctaaagcctcctgcatgttgggagagaggcaggcgtccgtcaccatgccaggctCCCCTGGACATTGTTAGTTTTAGCTTTACAGTACTTACTTTTCTATTTCCAATTAATTTC--------TTTTGTTCCTATGCAAAGTAAGAACAA------TCATTTTTATTATGTCATTACATTCTTTATAATAGATCTAAAATATCTTAAAatttttattttatgtgtatgggtgttttgct-ttcatgtgtgtctgtgcacttgcatgcctggtacccgaggaggctagaagagg-------ttattgaatcccctggaactg---gagttccagaaagttgtgacttgacgtatgggttctgggaatggaacgcgggttctc--tggaaagcagtcagtgctcttaacactgagccgtctctccagcccTTGATTTTGATTATTTTCA------TGAACCCTGTTCAGTTTCTCAG------AAACTTGAATCACTCTGAATAATGAATACGGGCTAACCAAATAAAAAGTAGGTGGTTTAGGGTAACATTCACTATTTTCTTACTTTACCAACTTGGTAAGAGA-ACTTACATAGGAGTAGAGTTAGAGTTTATGCCTGTCGTTAGGATTGACATTTTTGCATTTCTGGG--------TAAAACTTCTAAGAAGTTTCTAAATCTGGTAGT-TTCATATCTACACAGATACTCATGA-AATATTAAAAGTATTTATGTAAGTAATGGTGTTATTTGGGCTCA-TTTTATCTCTCCTTTCTTAGGTAACTAGTTCTCCCAACTGTACAGACATGAGTAACATTTGTCAGCCAACAGAGTTCATCTCCCGACACAACATTGAAGGGATATTCACTTTTGTAGACCATCGTTGTGTGGCTACTGTTGGCTACCAGCCACAGGTGAGGAGC-GTAGCTTCTGCATTAGTAACACGTAGGCCTCTGTTTTCTGTTACCAGTGTTGAGGTTACATGGC----TAATTCCAGAGATGACCAAAATATAGCAG-TCCAGTTCAGAAAAAGAGATGCTCCTATTTTGCGAGTAGCAAAATATAGTCTCAACTTCCTTTCAAGACTATCACTCCATATAGAGAAATGTAGTTGGTAAAACCATATGGAAATAGTAGGTATAAATATATAGTTTTTATTACTAATGTCAA-TACAGATCATTTAAAACTCCTTATTTTAATTATTCTAGTATAACTAGaatttatataattactatattttagtaatttatataatta-CTAGTAGAATA--AGCCTATAATAATTATAAGTGTAGCACTGCTTATTAAAATTCTCATACAGTAG-TATATCAGTTAACTACCCCTGACTTACATGGACATGGTCTCTGTTATTTATGAGCGTGGCTATGAGTGTGTGAAGTGGTCAGTCAAGATGTCATCTTGggggctggagagatggcttagtggttaagagttcaaatcccagcaaccacatggtggcttataaccatctgtaatagatctaatgccctcttctggtgcgtctgaagacagctacagtgtacgtatattaaataaataaataaataaataaatctttaaaaaaaaaaagaaGTTGCCTTGAAAATGAAGAAGgtcgggcagtggtggtgtatgcctttaatcccagcacttgggaggcagaggcaagccgat--ttctgagttcaaggccagcctagtctatagagtgagttccaggacagccagggctatacagagaaaccctgtgtcaaCCCCCCCCCCCAAAAAAAAAAAAAgaaaa-------------------------------------------------------------------tgaagaagaaagttggagaatttacttacacccagatccaaca-ctccctgtaaaggtgctgttattaaggctgtgtggtgttaatgtaCTGAT--CTATTCTCATGAGTAAGCTAAAGAGTCTTTTTTGCATTGGTAATTG---GATTTTCAGCAAAGATGCTTAGACATTTCA------AGGGGATTCT-ATATAGACCACAGCCA--------CCACCCCTAAAAATCATCA-----TACCATAGAC----AAAAATCGACTCAAAGCCCTAAATGTATAAGTACTAATTGGAAAC-ACCTTTTAGAAGAAAATCTTTATGCTCATAGg
s HiC_scaffold_1 140600254 2929 - 233722169 ATTTGGAAAA---TCTGTGTTTGagttctggctttttttttttttttctaatgatgcAACCTAGAGTAAGTTGCTTAaccttt---------ttcttatctttaatttGGTGATAATATATCCTATATGGAGTAACTATGAATATTagatttaatgtaaggaaag--caTCTCAGTGCCTGGTAtatga--------catgaaa----aattaa----------aatagtgtaGGTAGTGACATTTGAACTTTTTAGTCTATatattatacaaaat-tatatttgaaGTATATGTGCTCTTTTATGATTTTGTATGACTCTCAGGGAAATAACTAGTTTTTTGGATAAAaagaagataactatgcaaaga-ATAGAGGAGAGTATATACTTCCCTTTCTATATGTAGAACTTCTGT---CTTCTCCAATGGTCATAAAGAACTATTGGTGTTTG------------TTcacttactttaaaaatcataggTTTGGCAAGA-----CATCTATCTGTCTGTGATGCAGTCACAGAAAATTTGCCTTTATGTGTGATTTGGCCAGTGTGGTTTTTAGATTTCTTTGGGAGGAATTTGTACTCCCTAGTTTATTATA------------------GTTTACATGGGTTAAGT---ATATT------------AGTCT---TTATACAAACACATATTTACAGGTAAAACACATACGGTAAATTCTGTGTAATTGTTTATTGTTACCATTCATCATTCTCTTGCTGTATCCCTAGATTCTTCATACTTAAAATGCGTTTTGAATCTTAACTCACCTGACTTTTGAAAACTTTCA-----TGAAATGTCTTATTCCTTTCATCTCACCTTCCTAAAGGTGTTTCCCTCCCAGATGATGACCCAGAGGCTGGCCAGGGGAGCAAGTTTTGCCTGGTTGCCATTGGCAGATTGCAGGCAAGTGTGATTTTTCCATATCCTTGTCTCTTCATTT------AGAAGAACTTTCCTTGAGAACTTACTCATGTTAGTTTTCTTTTACTAGTTGAATACAAATGgagaatttcataaaattctgAACATTTGAGGAAATACAGTGTTCATAGTGAACATTGCTCCTCTTCAGTTTAGC-AAAACTTGAAGAATGTGAAGAGAGAATTCTTTTCCTCTTATCTTT----TTGTTAATAATGGGTTCTGCTATGTCGCCAAGCCTGGTCTCGAACTTCTAAGTTCAAGTGATCCTCCTTTCATAGCCTCCTGTA-------------------GCCTGTTCCTATCCC---------------ctcttcattttagttttataatgCTAAAGTTTCTATTTGTAGTTAATCTCCCTCTACTTCTTTTCCCTTCGTTACTGGGgatccaaggccttcacactagctatatcccta-gcccattaagaaaaacttaaaaaaaaaaaaaaaaaaaactcgagacaggatcttgttaagttgtccaggctgggctcaaaattggTGAACTTCTTACCTCTGCTGGTCATTACAGGCAGAACATCATCCTATAATCTAgcactgctaggattacagacatgtagaAT----CATGTTaatctaggaaaaaaaatcccttttatCATTGCATAAC------------TAATAGTAGGC----------------AAGTGGAATTATTTTGAGTCTTCTAAGCAAAGATAAGTCTCTTGGTTACTTAAACTGTAATTTTCCT-----ATGTAGATAAGatagtcaaataaaaataaatgggctTTGAGttgaattcattttttgtttact-----AATTTGTTAAAAGGCACATAAGTAGGAGTAAAGCTGACTTTTAT--CTG--ATTGTGATTACTACTTTTTCCCTCTTAGGATGAGATGTGAAAGTTT--AGAAATTCTTGCAACTAAGAGTCTTCATA-CTATGTAAATACCTATGAGAAGGTCCAAAATACATCTATAAAGAATGGCATAATTTCACTTAACTTTTATCTCTCCACTCTTAGGTAACTAGTTCTCCTAATTGTACAGACATGAGTAATGTTTGTCAACCGACAGAGTTCATCTCCCGCCACAACATTGAGGGGATATTCACTTTTGTGGATCACCGTTGTGTGGCCACTGTTGGCTACCAGCCACAGGTGAGGAGCTGCAACTGTTCCATCACCCACCCTTAGGCCTTTGTTTTCCCTTGCCAATGTTGAGGTTACATAATTATGTATTTCTAGAAATAACCAAAGCATATCAGCTCtagttcagaaaaataaatagtctTAGTCTATCAGTAGCTAAATTTATT-----CTTTCTACCAAGAGTATTATTTCCTCTGGAGAAATATGGTTTGTA----------GAAGCAGAAGGCAcaaatatgtattcatttttgttGCTGTCAAGTgctaattttttaacatt--ttaaagtgaTTATTCTAAT----------------TGATTAT------------ACTGATATGATGACCTAAAGGAATAGTAACctataaaatacacaaatttacCATTG-TTATAA-----CTTATCCACTTGACAGACCTGTTAACTATCCCTTAATTG-------------------------------------------------------------------------------------------ACTGATTAAACTTTC--------------------------ATGACTGTCAGT------------------------TGAGT---------------------------------------------------------------------------------------------------Gttgtgacacatacctgtaatcccagcactcaggaggctgagacaggaagattattgtgagttcaagaccagcctaggttacagagtgagatcaaggccagcctgaactgcatagtgacactctgtctca------------aaaagacaaaaaacaaaacaaaacaaaaaaactgtcaGTGCTGTAGTGATACTTAGGGCTGTAACAATGTGAGATGATCGGTAAGTGAAAGACAAAGTTGGAGGACTTA--TACTACCTGATTGAACACCTGGTTACAAAGCT--TGTTATAAAGACAATGTGCTATTAGTGTTAGGATAGATATTTTGGTCAACAGAttaga------tttttacatttatagtCGGTTGATTTTCAGC-AAGGTGCCAAGACAGTTCATTGCAGAGCTGTTTCCAACAAATGCTGGAACAATTGTACATCCATTGTAAAAAATCCTTATGTGTTACCTCACACTACATAGAATCACCTAAAAggacaaaatgtttaaaagttaatTACAAGTAAACTTCCGGGAGAAAATCTTTTTGGTCTTAGG

a score=21907
s chr3            95487152 1393 + 160039680 CACACCTATTTATAGT---AGGATAAAGA--GAAGAAGTAACATCCATATCTC-------TAACAGA----------------TGGGAAGGCGGGTT-TATTTTACGTCTCTCCTTCCCTTCTAGGAGCTCTTAGGGAAGAATATTGTAGAATTTTGTCATCCTGAAGACCAACAACTTCTAAGAGACAGCTTTCAGCAGGTAACATTT---TTCCTGGTTTGA-TCTGAGTACATATTTTGATCAATTCTTCAAGTTTATTCTAGATACTTAC-TGATAAGTGTTCAGTTGAGCACTGTGGTGGATACTATCTACCTAT---CTTAATTTCTAAAAAATA---------------TAAAATGATAATA---------------------------CTTTGAAACTAGA-----------------------------------------------------------------CAAA----------------------------------------------------------------------GTCCAAGGTATTTCTGCTTTGG--------------------------TTTTATCCAATAAATTCTCTTCAAAGCATTTAAAATATT----ATCTGCTTAACTACTTTATTTTAGATTATAGCAGAAAAATTG---TCTCAGAATTCTTTTCTCTATAATTGAAAGTTAACTCACTAGTAACTCACTGGTAACTTGCTGTAGTTCTCAGGCACGAGCTCTTGAAAACACTCGGAGACGATAAATGGCCTTGGCTTTAGATAACAGGTCTTTATATTTTGTAAGTTAATTAA-------GTCTTGATACTGTGCTTCCTGATACAATGGCTATAGTAATA---CTTA-AGGTAGAAGCTTGTGGGAGAGTC-AAGTATGGTAAAGCCAT--AGGCACATATATACATATGGCCCAGCCTTTGACACATGTTCATTGCTAATATCTTTATT-------GTTAG-------AGATGGATAACT------------------------------------------------------------------------------------------------------AAGAGATTGTCTTCTGTTCCATAAGACAGAAA--CTAAAAC------------------------------------------ATTAACATAGTACTTCTCTT---------AGGGGCTTTGTGGAAACCAAAATTGTTAAGTTTTGAGTTGAAGAGCTGGGATTGCTAAGTAAGGTGTAAAGTGTATTTAGTGTCACCCACCTGGGGTTCCTGGTATTAACCTAGAAAGCCAG--------TTTGTTGAGAATGTCTGCATCAAACTTCAAGGAAACA-----------TGGAGACACTCGCTTCTGTGTTCCCTCTTCACTGTACAG-TCATACAGGCTGCAGCTCTGGGAAGATACCTGATAGATAGATGCCCCCCTTAATT--------------TCCT----------------------------------------------------------------------------------------------------------------------CTTCCT----CGTTTGAACGTTGAAAAAGACTGGTGCTTCAGGGGCAACAACAC--GAGTCCTAAGGCTGTAAACATGGCAAGATTATTACTTAAT---------TTTCTTTTTTTTTAAGTCCACTGATGGAT-GAAACCCCTTTCAGGTGGTGAAATTAAAAGGTCAGGTGCTGTCCGTCATGTTCCGATTCCGATCTAAGACCCGAGAATGGCTGTGGATGAGAACGAGCTCCTTTACCTTCCAAAACCCTTATTCAGATGAAATTGAGTATATTATCTGCACCAACACCAATGTGAAGTATGTACCCTTCAG-TCTGCCCCTGTGTTGG-GTTCTTCA
s HiC_scaffold_1 140604562 1903 - 233722169 cacacttatttataattttaggatTAATACAGGAGAAATAAAATCCAGTTCCCAGGTAATGAACAGAACAAGTTAGATAAGCATAAAAGTGTAGATTGTATCatcctcttttttatctcttctaggAACTCTTAGGAAAGAATATTGTAGAATTCTGTCATCCTGAAGACCAGCAGCTTCTAAGAGACAGTTTCCAACAggtgacttttgtttttctggtttaaaTCTTAAGCtacatttctgtgtgtttatCACATTACACC---ATGCTTATGTTAGCACTGATTAATTGAGTACTGTGGCAGGCACAACAGTTTTATGTTCTTTATACTTAGATAATACTTACAAATTATGGATGAAATCAAAGtagtttcacttatttatttgtttatttatttttgagacaagatatcactgtgtagtataggctggccttgaacttgctatataTCCctgtatatcccaggctggcctcaaatttgtggtgatcttcctgcctgagcctcccaagtgctgggattagaggcatgtggcACCAAGCCTGGCTTGTTCAAGCGGTTTGGGCTTTGGCTAATTACTGTTCTGTATCCAACTAGTTTTACCCAAGGAACTATCTTTAAACTATGTAAAATATCTAGAATTTATTAATCTG--------TGGGGTACAgtagaaacatttattttccaaatttcttttatagataattgacagtt----------------------------------------------------taaaaatatttggtga-aTTTAATAGACTTAGCTTTAGATAACAG---CTTTTGTTAGACAAGTTAATTAACCTCTGAGTCTCTATAGAATCCTTATAGATACAGTAGGGATAATAATAGCACTTATATTCAGAAAGTAGTTGGGAAGTTTAAATAAGATAATGCAAATAAGGCACATA---------GCCCCAGTGGTTGACATGT----AATAGtagtatatttatttgctgctgttaggaaatataaaaagattattttcggggctggggatttagctcagcggcatgccttgtaagcaggcagtcatgagtttgatccctggtaccgataaaaaggcaaaaggcaaaaaaaaaaaaaaaaaagattactttcTATTTCATGCCACAAGAAACCTAAAATTACTTTGTGTGCAGAAGATtacttttataaagcaaaagtaaaattggactaaaacttttattttactcataCTGGGTACTGTGAAAAT--AAATTCTCAAATCT--AGGAGAAAAACTAGGTTGGAAGAGTAATACACAAGCTATTTTCAGTGTCATTAAACTTAAATTTCTGATTTAGATTTGTAAAGGTAGCTCAACATTTCTTTAATAAACTTTTCAACAAAAATGAGGGAACTAGCACTGTCTCTTGGaagtaattgtttttcttttttaactaagATGATCAGATCACACAGG-----ACTCTGGGAAGAAAAGTGATAAATACACTTTTTCCTTATTTAGTCACCTAGTTTTTCCTGACTTGGtattttggttggttgttttgagttttttgggAGTGgggtttggtactggggatcaaacccagggcctgtgcactCTAGGTaaatgctccaccactgagctacatccacagccttCTTGTGTTGTCTTAACATTGAAAAAGACAGGTGCTTCAGGGAAAACACCACAAGAGGCTTAGGGTTGTAGaaa-ggtaaaatttttatttaatgggaggggttttttttcccctgaattcCACTGATAGTTTGAAAACCTTTTTAGGTGGTGAAGTTAAAAGGCCAGGTGCTGTCTGTCATGTTCCGGTTTCGGTCTAAGACTCGAGAATGGCTCTGGATGAGGACGAGCTCCTTTACCTTCCAGAACCCTTACTCAGATGAGATTGAGTACATCATCTGTACCAATACCAATGTGAAGTATGTACCCTTCATCCCTTTTCCAGGGTTGGCATTTTTCA

a score=75357
s chr3            95489468 2107 + 160039680 GGTTACCTATGGGACTGGACTA-AGATGTTAGTAATTGTTCACCTTTAGTCAATATATGGAGTTTATTGTATTGAGTAATTCCTTGTTT------CCCCTTTTGTGTTCTTGTCTACTCTATTTTCCTAGGAACTCTAGCCAGGAACCACGGCCTACACTGTCCAACACCATCCCAAGGTCACAGCTAGGTCCGACAGCCAATTTATCCCTAGAGATGGGTACAGGGCAGCTGCCATCCAGGTAAGAAATGGTGAAATAGTTAGCTTTTCAAGTAAAAAC--TAGCTGGGTGTAGTGATGTGCAATCACATATTTTTGTT-GTTGCTGCATGTGGTTTATTT------TTTAAAGTCTTTTTCTCCAAATTCTTTGTTAAAAGTCTAATTTTCCCCTATCGCTTTCCACACTGATGTTTGACGTATAGGCAGCAGCAGCAGCAGCACACAGAACTGGATATGGTACCAGGAAGAGATGGGCTGGCCAGCTATAATCATTCCCAGGTGAGTGTACCTTTTTCCTATAAGGAGACAATGAACATTTCTTTAAAATGTATATTgaagctaccagaatggtttagtggttaagagagtactgctcttggagaaagcccaaattcaattcctagtaaccatagtgggtggctcacaatcacctgtagacactatgttcATATACACAGACACAGACACAACAATTTAAAACAAAAATGAATCTTAAAAACAATATTTATCAGTGCCAGTGAGAATGTTCTATATAAAATTGAACATTATTGATTGTTTTCACTATTTTATTCCATAGGTTTCTGTCCAGCCTGTGGCAAGTGCAGGATCAGAACACAGCAAGCCCCTTGAGAAGTCAGAAGGTCTCTTTGCACAGGACAGAGATCCAAGGTTTCCAGAAATCTATCCCAGCATCACTGCAGGTATGGGTTTCTTCCGCAGGCTCCTTTTACAGGCTGAGTTTC----ATTATTACTGATGGG------ACTGCCCAGTCAG-----------CATACTTCTACTTCAGT-TACAGTACTTCATGAATAAGTAGGAATTGATTAAACTATGTGCTACAGCCCCTTGA-TGGCCCTCCCCCAACTCCTTTTGGTCTGCAGATCAGAGTAAAGGCATCTCCTCCAGCACTGTCCCTGCCACCCAACAGCTGTTCTCCCAGGGCAGCTCATTCCCTCCTAACCCCCGGCCGGCAGAGAATTTCAGGTGAGCCCCATATGTGTGTGCTGCTTGACAGGGCTCTGCAGGGTTCAGTTGCTGGATCCGTGTGTCA-TCTTCCCTTGCTTTCTCTGGTCACCTCAGACAAAGCAGTAGAACTTACTGGACCTAGGGTGAGACAACGAAGCTGCTTTTCCTCCTG------TTTTTGCACCTATTCTATTGCCTTGCTCTAGGTTCCAAACGTCTCTGTG-TGGTCAGTGTGTGACAGTCAGTCTTTCTTGTGTTTTT------AAAT----TTATCAGGTTTTCCTTAACTCCAA-GAAATCAGAGGAATCTAGGGATAGAATG--TGTCCTTTGATTCATAGCTTCTGTGATGGAGTCAACCTTTTAA-CCTTCACTTT-CTATTTGTTCCTTCCTAGGAATAGTGGTCTTACCCCTCCTGTAACCATTGTCCAGCCATCATCTTCTGCAGGGCAGATACTGGCCCAGATTTCACGTCACTCCAACCCTGCCCAGGGATCAGCGCCGACCTGGACCTCTAGCTCCCGCCCAGGCTTTGCCGCCCAGGTAGCGCCTCTTACCTGTCTGACCCTGTGTGTTGTTGTTTGT-----------GGGATCTTTTTTTTTTCCTCCAGGT------------------------------------------------------------------------------------------------------------------AAATTTATT--------------ATTGTCAGATACCTCCTTT--------------------------------------------------------------TCAGTTCCTGTTCTTCATCTTTTAATTTTCATCTTTTTTGCGAGGAGCTAGATAATTAAAATACCAGAGATAACATCCAGAAGTCTCTTTAGAACCTATGTTT-TCATATGCTCACCTTAAGACAGAACTGCTCATTCACAGCAGTTTGAACAGCTTTGGTCTCAGG--CTTGTTTGGAGTAAATTCAAAG-AGTTTG-TCTTTGTTTAGGACTATGTAATATAGTACCAAAGTAGAAAATTAGTAATTATATTCA------TTTATTTATGAAAATATA------GTATCCATCtatataatatatagtaaatatgttaaatttat
s HiC_scaffold_1 140609515 2185 - 233722169 GGGTACATACGGGATTAGACTTTAAAGATTAGTGAGCCCCCCCACATA-TGAGTATATAGAACTTTCTGTACAgtcaaattccttttttttttttccctttctctgtttttgtct---ttattttcatagGAATTCTAGCCAGGAACCACGGCCTACACTGTCTAACACAGTCCAGAGGTCTCAGCTAGGTTCTACAGCTAATTTACCCCTAGAGATGGGCTCAGGGCAACTGGCACCCAGGTAAGAAATGGTGAAATAATCATCTGGT-GAGTAGACACAACACCAGGGGGTGGCTATCTGCAATCTCATTTTTTTGTTAggtggtttgttttatttatttatttatttttgaggcccTTTCAATTgattctt------aaatct--ttttttcctgtttctctcctcACTGAT---TATCATATaggcagcagcaacagcaa---acaGAATTGGACATGGTATCAGGAAGAGATGGATTAGCCAGCTACAATCATTCCCAGGTGAGTGTGTATCATCTTTG-AAGAGGACAGTGAACATTTCCTT---------------------------------------------------------------------------------TAACAATG---------------TCCCCTAGAGCCAGTCAGtgtatgtat-------------------tttataa-------gaatttcagaa------tttataaat----------------tatgttaaactt----tcaatgattattttcatcattttattccaCAGGTTTCTGTTCAGCCTGTGGCATCTACAGGGCCcgagcatagcaagacccttgaAAAGTCAGATGTTCTATTTGCCCAGGACAGAGATCCCAGATTTTCAGAAATCTATTCTAACATCAATGCAGGTata--ttttttc---aatctttttttaaaattctcatttcttAAATTCTTACTCGTGAACCTGTTACTGTCCAATCAGTGATCTTCCAACATTTTTCCACTTAATCGTAGAATGCCTCATGAGTAAGTAGGAGCTTGCTGAATTATATACTACAGCCCCTTGACTGGCCCTCCCCCCACTCCTTTTGGTCCGCAGATCAGAGTAAAGGCATCTCTTCCAGCACTGTCCCTGCTACCCAACAGCTATTCTCCCAGGGCAACTCATTCCCTCCTAACCCCCGGCCGGCCGAGAATTTCAGGTGAGCCCCATATGTGTATGCTGCTTT-TAGGGTCTTGAGGGATTCCACTGCTAAATCCAACTTTCATTCTTCCCCTGCTTTCTCTAGTTATTTCAGGCAAAGCAGTAGA----------------GTGAG-CAAAGGAGCTGCTTTCTTTCCTATCTGTTTCTTTGCACCTGTCCTATTGTGATGTTCTAGGTTCCATCCTTGTGTGTGCTGGTCAGTGTGTGGCTGTtagtctttattgtttttttttttccaaattctgttACTGCATTTTCCTTAAACCCAAGGAAGTCAAGGGGATCTAGGAATAGTATGATTGTCCTTGGATTCCTAGATTCTGTGATGAACCCATCCCTTTAATCTTTTACTTCACCATTTGTTCACTCTTAGGAATAGTGGTCTGGCCCCTTCTGTAACCATTGTCCAGCCATCATCTTCTGCAGGGCAGATATTGGCCCAGATTTCCCGCCACTCCAACCCTTCCCAGGGAGCAGCCCCAACTTGGACCCCTAGTACTCGCTCAGGCTTCTCTGCCCAGGTAAAGTTTCTCATCTA---ATCCCTATgtattagtttttgtttctttccacatgtatgattattatctcttttaGGTAACTTCTTAACCATTTACCAGTCCAATTGTTTAAATACAATATGacaaaaaattgcatattttttgttaattttataagataaaaccaagaaatataaaatcaatcattttatcaaatttattcaatactgGAATGGATTGGTTGAAACGACCCCTGCCCAAGTGATATGAAAACTAACATGCTGCCTGAGTGATGCTCGGGAtaaactgttaagtggttaaTCTTCATTCTCCAGCTTCTAAATTTTGGTTTTCTCA-GAGCAACTAGATAATTAAAATGCTATAGATA--ATCCAAAAGTCTCATTAGCATCCATGTTTCTCACATAGTGACCTTTAGTTAGAATTGCTTATTTAGAACACTTAG---AGATTTGATTCTGAGCTCTTTCTTGGAGTAAATTCTAAGAAGTTTACTCTTTGATTAGAACTGcataacataaaaacaaaagagaaaattactaATTACATATAGTGATGTgtgtttataaaaagaaaatctgtgtaTCCATGTGTACG--ATATGATAAATGTGCAAAGCCTAT

a score=125946
s chr3            95493477 4509 + 160039680 [encoded data, 5319 characters]
s HiC_scaffold_1 140612908 4869 - 233722169 [encoded data, 5319 characters]

a score=51939
s chr3            95499180 2546 + 160039680 CTATCCCTGACTCCCTCCCTTATCCAGATTTTCCAGCCA-CTGCTGGAGTTGACTTCCGCAATCCTTACCGAATAAATCTAGCACCCTTAGTCTTCCGCTCACAGTAGCCACGCTTCCTATCCGAAAAGAGCCTAGCGAACAGATTCTCAACAGCAGGTAACATTTTTAACTTC-TGGATCTTTTAGCGTCTTGTTCCTACCAATTAACCTTATTTTAAGAAGAGAAAGGATATAATGAATTGGGGATCAAATAATTTAAGTTCCCTGAATAACAACATAATCCTTAGTTTATTTTCTAGCTAAATG-----TGTATGGAAATCTTTAGGATTTTCTAT-------------GTGAATGAATATGTGGCTGTTGGTATAATCAGAGGAAGAGGA-----------TTCTGTAAG--------------------------CCTGTCTCAAGCGTGGGCTCTTTCTGAGTTCTGTTT--AACTTAAGAGTTAACCAACTCCTGGG---GAAGAAGAAGAATTCACAGCCACCCGCA------------------------------------AGCCTGTCACACCCCGGTTACTG---GTGCTCTGCTGGGTAGTCTGTTGCTTTGCAAAGAGTA----GATGAAATGTCG--TCAGTGTTGCACAAGTCATATGATGTGCTGCTGGTGGGAAATGGTTTTTAAACTTAAGAACTTGCAATTAAGCCAACACAAGAAATTAATGGGGCCAGAGCAGATGCTGAAAAGCTGTGA----GCTGTGAACTTAGGTCATTACGGAATACTGTCCTTCCATCTTCCACCTCCAT----TCGTGTCTGAGGCTTTCACCCTGTAAAG-CAGCCACG-----TCGCTGTTTGGAAAAAAGAAAAGAGAAAAGAACAGCTACTTACCCGTGACATCTGGTTATGATCAGAGCTGTTTCCTGCCTAAAGGAGAGGAGGTGGAAAGAA-----AAAAGTGGACAAGGCAAATGAAGATACAGTGAACGTAAATACCATCAAAATGGTCCTGTCCTCTCCTGGCAAGATCTGG--------GTGTAGGCAAGGAAGAATACTATGCACAAAGCCTGAAGTGTACTGTAGCTAGAACTCTGGCTCTGTAACCACGCTCACTGTGCTTATTCTGTTTATGTGCACCCTTACCTGGGATACGGGGGTGGGGTGGGGGTGGCATAAGAGCTGCCGAGCCT-TTCCCAGTTACTTCTACGCACTGCGGTTGCCTAAAGTGTGTGCAGTGTTGGTGGAACATACGGGAGTTACAATGATTAAGTCAGATGATCCGG------------CACCTCCTGAACTTCTGTCTGTTT-------TATGTGAGAATCACCTGCAATTCCTTGTTTTCCATATACAGCCAAGTGTGCCTGTCTCACAGTCAAATGAAGGGAT-TCTTGGGCAtggctcacacctttagtcctggcacaggggagagggggtagatctttaaattcaaggccctcttgattaacatagtgagctcaaggccagcaaagacttacataaaaagaccatgtctctgaaaTGGCAGAAAGTCTGTGTGTGTATGTGGTGTTCTTTTGAGTTTATGAATCCCTTAGGATTAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTATTTTTCTGGTAGAAAATTTATTTTTAA-AGCTCTTAAAAGG----------TTAAAACTTTCCTGATAACCTGTCTGCTGCCATTTGAACAT---------CCAAAGCCAACCTGTGAATTTCT--GCTAGTGGAAA--TCTCCCCTAATTATTCCTTCCGCCAGGATGTGGGTGTTCAAGTTTCTGCTGCTACCCATGGTGAGCTTTGCTCTGTCTCCGGAGGAAATGCTGGACACCCAGTGGGAGCTATGGAAGAAGACTCACCAGAAGCAGTATAACAGCAAGGTGCC------------------CAAGGAAGCAG---------------TCCCCATTCTCTAACTCTGCAG---------------------------------------CTAGCTTTTCC----------TTCTGTGCATCAGTCCTTCTGTCTG--CTTCCCACAT--------------GTATTAgctggagaggtagctcaggaacggatggctggtctagcatgtacaaggcactgagtccaatac-ccagtaccATAGATGGGGCTGTATGGGGTGTATGTGGGGAAGGCTCTTTTAAGGAACACTTCTCATAGTAATGCCATTATTCTA---------------TGGTCTCTCTAAACCTTTGCATAAGA-TTTGTGTA----------------------TGTACTCTTAAGAGTCTATGGTTTCCCAGTTAGATTGTGTTTTCTGTTT-ATGTTGTATGTCTTCTTC-TAAAACTACCTATATAAC----CACTCAGTCTACAAATTTACTGACTATCC--TGTTTAGGTGGATGAAATCTCTCGGCGTTTAATTTGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAACCTGGAGGCCTCTCTTGGTGTCCATACATATGAACTGGCCATGAACCACTTGGGAGACATGGTGAGTTGCCTCTCAGATCCAGGCCTGCCCACTGTC---TTTACCCTGG-TCCCTGCTAATGCTTGGCATC---CTTTCTTGTCTCAGACCAGTGAAGAAGTGGTTCAGAAGATGACGGGACTCAGAATACCTCCCTCTCGATCCTACAGTAATGACACTCTCTATACCCCAGAGTGGGAAGGCAGGGTCCCAGACTCCATCGACTATCGAAAGAAAGGATACGTTACTCCAGTCAAGAACCAGGTGCCTTCTGTAgtgtgtgc
s HiC_scaffold_1 140618287 2556 - 233722169 CTATTCC--GCCTCCTGTCTTATCCAG-TTTTCCAGCCAACTGCTGTGGCTGACTTCCGCAATCCTGATGAAATAAATCTAGCACCCCTGGTCTTCCGCCCACATTAGCCACACTTTGTGCCTGAAAGGAGCACAG--ACAAGATTCCCAACTTCAGGTAACGTTTTCAGTTTCCTAGATCTTTTAGCTTCTCATTCTTGCCAATT---TTCTGTTTAAGAGCATCAGGGATATGGTGAGTCG---ATCAAA-ATTATAGGTTCTTTGGGTGAAAACGGATGCCCTTATTT--CTTCTGGCCAAATAAAATCTGTCTGGAAATCTTTAGGATTCCTTGTATTACTGCATGTAGCGTATGCATACATGCTTGTTTGGAGAAGCAAAGGAATAGGGGCTCCTTTGCCTTTTTTGAGGTATGAGGTACCTCAAAAGCATACCTTATATCTCAAAAGCAGCCACTCT-TGTTTTCTGCTTGGAACAGAAAAGTTAACTGACTACTGAGACCGAGTGATAAGAGT-----GGTACCAGTAGGTGGTAGCTTggtatttctgctctgatgtatGGTCAGCCCTTAACACTCCAGCTATTAAATGTCCTCTG----ACATTTTACCAGTTTGCAAAGGTTACAAAAATGGACTATAAATTTTGTGCTGTGCAGGTCATATGACTGCCTGGAGACTGCAAATTGTTGTTAAACTGAAGGACTTGCAGTTAAGCCAGTGCAGGAAATGAGTg--------------------aatctttgaagtagttgtgAATTTA----ACCATAGAATACTGCTTTTCCATCCTACATTTTTCTAACCTTGGTTCTGAGGGATTTACCCTATGAAGGCAGCCACAGATGTTTGttgttggaaaaagaaaaa------------------tcttccacAGCATCTGGTTAAGATTAGGCCAGTTTCCTGcc-aaagaggaaggggaggaagaaacTTATAAAAAAGGAGACCATAAATGTTGAGTTAAATAA-GGAGATGCTGTCAAC----TTTTCTTGTCTTCTGGGAAGATTTGGAAAAGTCAGTTTAGGCAAAGAAAA----------------------------GAAGCTGGAAATCT-------------------------------CTTCTATGTGTATCCT------------------------------------------CCAACCCCATTTCTATCTTACCCTTTGTTCCAC----------------TCCAAAGTTGGGG----ACACTG-------AAAGGTTAACTGAGATGGCCCAGTTGTTTGGTCTCCACCCCATTAATGGTTGTAAGTTTATAGGTATGTGTGTACATACTTTGGATTTCCCTCTGTC----ATAC--------------TTCTTGGAATTAGATAAATCTTTATCTTGTACAAAGCCATCCTCTTCTATC-----------------------ACCCTCAATTCCTCGTCTACCTT----------------TCTCGGAGAGCTAAGTTTTCC----------TCTGTCTT----ATGGTTCAGAGGCAGGGC----------TGCTTATCACTAGTCATGACTCCCCAAGGATT------------------CTTCCCTATGTGTGCACTTTTTtcctaagaggaactagacttctGTTAGCTTTTAAAAGGAATCTGTGACTCAAAGGTT-----AAGAGCAACCTACTGGAATATGACTATTTTCTCAACCGTAAGCCAGGCTGTGAATCTCCAGGCAAATGGAAGAGTCTTCCCTAATTATTCCCTTCCCCAGGATGTGGGGGCTCAAGGTTCTGCTGCTGCCTGTGGTGAGCTTTGCTCTGTACCCTGAGGAGATACTGGACACTCAGTGGGAGCTTTGGAAGAAGACCTACAGGAAGCAGTACAATGGCAAGGTGCCTGGGAACTGGGAGGGACACATGGTGGTAGACCTGGGGTCTGAGATCTCCATTCTCAGCTTCTAGAGTCCTCAATCAATTACAGTATTTCATTTCAATGAAGCAAACTATCCCTTCCCTAACTTCATTTCTGTACCTCAGCTCATCATCAAGATCTCTCCATATTTTGTTGTATAATGGTCTTGTCcatgggtatagctcagtgatacagcccTTACCTAGCAAGGGCTAGGCCCTGGGTTTAGTGCATCaccaacagacacacacaccttaAATTTGTCTTTTGGGAAGAC----------AGCTTTTCAGATAGTAATGCTATTAATCTATGAACAATTTTCTATTGATCTTTTCAGAGCTTTGCATTGtactttttgtatttgtttacatatttctttttgtatACTCTTAA---TTCGTGGTTCTCTAATTAGACTACATTTAGAATTTCAAGTTGCATCTTTTATCCACAGCACTAGCTATGTAACTTTGCATACAGTCTATGCAAATACTGATAATCCTTTATTTAGGTGGATGAAATCTCTCGGCGCATAatttgggaaaagaatctgaaataTATTTCCATCCATAACCTTGAGGCCTCTCTTGGTGTCCATACATATGAACTGAGCATGAACCACTTGGGAGACATGGTAAGTTGAGCCTGAGCTCCTG----GCCCCCTGTCACATTTGCTTTAATTTCCTGCTAATGcctgatctcttttttttttgtctcagacCAGTGAAGAAGTGGTTCAGAAGATGACTGGGCTCAAAGTACCTCCCTCTCATTCTCACAGTAATGATACCCTGTACATCCCAGACTGGGAAGGCAGGGCTCCTGATTCTGTTGACTACCGAAAGAAGGGCTATGTTACTCCCGTCAAAAACCAGGTACTGTTTCATGTGTGTGC

a score=4388
s chr3            95501333 141 + 160039680 CTATCCTGT---TTAGGTGGATGAAATCTCTCGGCGTTTAATTTGGGAGAAAAACCTGAAGCAAATCTCTGCCCATAACCTGGAGGCCTCTCTTGGTGTCCATACATATGAACTGGCCATGAACCACTTGGGAGACATGGTGAG
s HiC_scaffold_1 140701528 144 - 233722169 CTACCCTGTATGTTAGAATGAAGAAGAAGTCCGGCGGCTCATCTGGGAGAAGAACCTAAAGTTTGTGACGCTTCACAACCTAGAACATTCAATGGGAATGCATTCGTACGATGTAGGCATGAACCATTTAGGAGACATGGTAGG

a score=18940
s chr3            95502290 611 + 160039680 aaggaaactgaggcacagagttcagtaac----tgctcaagattgtgttt----ctagtatgcaaagtcagg---gttagaattcaggaaaac---tgtcgccagagCTATAAAGTCCCCACTGTACTTGACTTCAGTTAAAGGAGACAGTGGTCACAGTTGTCATCAATGGGGACAATAG------------------CAGGGCTTCACAACAAAGACAGTCTTTATGGTTGAGTGTTT-----GTGGGTGGAGTTTTCTCAGGCTGG---CAGAGAGACCCACCCTCTGTGAAGAGTGATGGCTGACAGGTCCTCTGTATGTTTCTCAGGGCCAGTGTGGTTCCTGTTGGGCTTTCAGCTCTGCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACTCTTAGCTCTGAGTCCCCAGAATCTTGTGGACTGTGTGACTGAGAATTATGGCTGTGGAGGCGGCTATATGACCACTGCCTTCCAATACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATGCTTACCCATATGTGGGCCAGGTGAGACCACCGTAGTATG------TAGCCGTG----GGCTGCTCCTTCCCCGGGCATG----------------------------GTTTTGTTTTCTGTTAGCATATCCTGCTCCTTTCCATTTTTTTTTTCCTTTT
s HiC_scaffold_1 140621854 669 - 233722169 AAGAAAACTAAGGCACAGAACGCTGTAGTAAGTTGCTTAAGGTAATGTGCACAACTAGTGAGTA---CCAGGTCTGTCAAAACACAGGCGAACAAATGCCTCCAAAAGCTGGCTGTGCTTTCTGT--TTTACTGCAGCTCACAGGAAC------CACATTTATGAACAGCAGTAAAATTAGGCATTGAACGTTAAGTGAAAGGGAATAA----GAAGGCAGCATTTGCG-CTGGGTGTGTAAAGAGCATATGGAATGTCATCAGGCAGGTGTCGGGAAGATACA---GATGCAGCAGCTCAGGGCTGATCACTTCTCTGTACCCCACTCAGGGTCAGTGTGGTTCCTGTTGGGCTTTCAGCTCTGTGGGTGCCCTCGAGGGCCAGCTCAAGAAGAAAACAGGCAAACTCTTAAATCTGAGCCCCCAGAATCTGGTGGATTGTGTATCTGAGAATGATGGCTGTGGAGGTGGCTATATGACCAACGCCTTTCAGTATGTGCAAGAGAACCGTGGCATTGACTCTGAGGACGCCTATCCCTACGTGGGCCAGGTAAGGCTG-TGCCGTATGGCTCCACAGCTCCGACACGGCTGCTGTTTACCTAGCAAGGATAGTGCTTCCTGGGAGGGATTtcagaagttttgttttcttttattttattcagcttttttaaatttttttttttttttt

a score=7542
s chr3            95502563 227 + 160039680 CCTCTGTATGTTTCTC----AGGGCCAGTGTGGTTCCTGTTGGGCTTTCAGCTCTGCCGGGGCCCTGGAGGGCCAACTCAAGAAGAAAACTGGTAAACTCTTAGCTCTGAGTCCCCAGAATCTTGTGGACTGTGTGACTGAGAATTAT---------GGCTGTGGAGGCGGCTATATGACCACTGCCTTCCAATACGTGCAGCAGAACGGAGGCATTGACTCTGAAGATGCTTACCCATA
s HiC_scaffold_1 140704883 240 - 233722169 CCTTTGTGACTGTCTCTTGTAGGGTTCCTGTGGTGCCTGCTGGGCTTTCAGTGCCGTGGGAGCCTTGGAAGCACAGGTGAAGCTGAAAACAGGAAAGCTGGTGTCTCTCAGTGCACAGAACCTTGTAGACTGTTCAActgaaaaatatggaaataaaggTTGCAATGGTGGCTTCATGACCGAGGCTTTCCAGTATATCATCGATAATAACGGCATTGACTCAGAAACTTCCTATCCCTA

a score=11007
s chr3            95504653 400 + 160039680 ggattgtgagctttaaacagttcAAATGTGGATCTGGGCTCTCT------CTACT-CAGGTGGTACATTGAGA--TCCTGGGGTCTAGA-------------AATCCTGGGGTCT-GTGCCAGGAATCCAGCTAGGAACTGAATCTATATTTGTGGTAATATCCTTTGTGCTTCACAGTCCCTCATTTCCTAATTCCTCACATGTGTTTATGGAAGTAAATGGAGTTTAGGGTGTGGTTGGCCAAGTCAGACTCTTATGATCTGTCACATGCCTGGATTTTGGGGAAGCGCTTGGAGA--CTCTTGTAATTGGGCCTAGTTTGGGATTTTAATGATTGAGATGCAGCACTTATCAGACATTCTACCACCCGAGAGT-CTAGCAGTAGAGTC-CCACGTGTATCCATTAAT--GTAGATTCAAGTGTTGT
s HiC_scaffold_1 140617358 419 - 233722169 GGGTTGGGAAGTTTAAACTCCTCAAGTCTGTACCTTGTTTCCTCTTAGAACTACTGTATGTGGTTCGTTAACAATTCTTAAAGTCAAGAGGCATAAGTCCATATTTTTGAGGACTTATTTGTGGAAACCAGCATGGAACTAAATCTAAATTCCATGTATTATCCTTTCAATTCCAATAACTCTCTTTCCCCACATCTT-------gtttatggaagaaaatggagTT--GGGTGGGGT-GACTGAGCTGAACTCTTATGATTTGTCACATGGGTAGAGTTTGGGGAAGCATTTGGAGAAGCTCATGTGACTAACCTAGAATGGGGATTTTAATCATAGAGGCATAATACTCATCAGACATCCTATCGTCTGAGGCTGGTAGCAGTAGAATCTTCATGTAAATCAATCAGTCCTTTGATTCAGGCATTGT

a score=18463
s chr3            95506434 606 + 160039680 tTCATAATGTTCTAAAACGGT-AAGACCCAAAGACTAGTTGGTTGCCTGTAACA-------TGGTTGGATTTCTCAC----CAACTCATTGCCATTTGATTGACTCTGCTCTGATCCACCTTTGATTATTATTTC--CCAGGATGAAAGTTGTATGTATAACGCCACGGCAAAGGCAGCTAAATGCAGAGGGTACAGAGAGATTCCTGTGGGGAACGAGAAAGCCCTGAAGAGAGCAGTGGCGCGGGTAGGACCCATCTCTGTGTCCATCGATGCAAGCTTGGCATCTTTCCAGTTTTACAGCAGAGGTGAGTTTCTCTTCCTGTAGAGCCCC------------------CTCTTCTAGGGTGTGGGTGTGGCCCTAAGAGGATTGAGTGCTTAGTTTT---CACAGTCTTGCAG--------------CTGCTGCAGTGCTTCGTGTCTCAGCTGTAAATCC-CGAGGCAAGGG---------------------ATCGCACGGGCTGCCTATGT------------TCAGAGAACCTCA-TCCAGAGTTTGTGTTGTAGGTGTGTACTATGATGAAAATTGTGACCGTGATAATGTGAACCATGCAGTGTTGGTGGTGGGCTATGGCACCCAGAAGGGAAGCAAGCACTGGATAATTAAAAACAGGTAA-------CACTGACCTTGTCAATTA
s HiC_scaffold_1 140625394 688 - 233722169 TTCATAGTTTCCTAAAATGGTGAAGAACAGACTGTTACTTCACTGCTGCTACTCAAAACTTTGGTCAGCTTTCTCACTGATCAGCTCATTGCCCATTG-----CTTTGTTCTAGTCCTGTTACAATC-TCATTTCTTCCAGGAGGAAAGCTGTATGTACAATCCAACAGGCAAGGCTGCTAAATGCCGCGGGTATAGAGAGATCCCTGTGGGCAATGAGAAGGCGCTGAAAAGAGCTGTGGCCCGCGTGGGACCCGTCTCTGTGGCCATTGATGCAAGCCTGAGCTCCTTCCAGTTCTACAGCAAGGGTAAGGAGCCATTCCTGCAGAGACTTGGATATGCAGGCACGATGTTCTTCAGGGGTCTGAGCAGTCTCAGTACAGTACTCAGTGTTTGTATTTAAACTCAGTCTGCCAGAGACAAATTAACATTGGTCACAGTGCAGATCATCTCTGTGGTCAACCTGCTAGGCTGGGACTGAATTCTAGTGTCTCCGACATCAAGAGGCCTCCCAAGGTAGCTCTTGCCTAATAGAGAGCCTCAGTGCAG---TTGTTTTCCAGGTGTGTATTATGATGAAAGCTGCAATGGTGAGGATCTGAATCATGCACTGCTGGCAGTGGGATATGGGATGCAGAGAGGAAATAAGCACTGGATACTTAAAAACAGGTAATGAGGGGTACTGCTTTTGTCAGGTA

a score=22309
s chr3            95508739 667 + 160039680 aTCAGTACTTGACAAAATACAGTACGTGTTTTAAGGACTGCATACAGTATGCTCCTATGTATTTTTCTTGATTGGTCCTACAGCTGGGGAGAGAGCTGGGGAAACAAAGGATATGCTCTCTTGGCTCGGAATAAGAACAACGCCTGCGGCATTACCAACATGGCCAGCTTCCCCAAGATGTGATTCCAGCCAGCCAGCCCATCTCTTCTCAGATTCCTTCCTTCATGGTGCAAGATATTGGTG-GCTTTGGAAGGGAGTGGGCATGGCGCTCCTGAGAGGGACGCAGCGATGCTAACTAAGATTGTTTCATTTCTCCTCTCGTTGGTGCTTCCAGTGACAACT--CTACTTCCCTTCTCTCTGCCCAGGGCCCTTTTCTTTGTGGACACA-ACAGGGCATTTTTCTGAGAGTTGTGG------------------ACTCTGTGCTGG-------------TAGACATTGGAGT---------------CCTCCAGCAGGCTGGAGGACTAAGGTGACC---------TTCCCGAGCCCCTGTCTTCTGTATACACCA-GTGAACATTTCAGTCTTCCACTGAGATGCACAAATCTATTCGTGATTCTTTG--ACAAATTTACATGATATTAAAAAAAGTG-----TTTTTCCTTCTTTGTA--TTTGAAATAAAGTATCTC--ATTTACAATTTAATAAAGAACACT------GCGTCCATACTATGTTGGTTATGGTGCTAGC
s HiC_scaffold_1 140626767 725 - 233722169 ATTAGTACTTGGCACACTATAATGAGAGCTTTAAGGA----ATAAACTAAAGTACTAAGTATTTTTCTTGATTGGTCCTACAGCTGGGGAGAAAACTGGGGAAACAAAGGCTATGTTCTCTTGGCTCGAAATAAGAACAATGCATGTGGCATTGCCAACCTCGCCAGCTTTCCCAAGATGTGACTGCAGCCAGCCAGCCTCCTCCTGTTC--TTGCGTTCCTACTTGATGCAGTACCATGATATGCCGTGGGAGGGAGC-TGTGTACCATTCTTGAAACAGATGAGGCAACACAGACTCTG--CGTTCCA-TTCTTCATTCACCGGTGCTTCAAGTGAGACCCTACAACTTTCCTTCTCTCCAGCTGAAGCCCTTTTCTCTGGGGTCACATGCAGG--ATTTCCCAGAGAGGTATGGGTGCATGTCCTGGGGCTAACTCTGTGGAGGTCTTCTGATGGGCTAGGTTCTGGTGCATTAAGACTACTTAGCTTTAAGTACCCTGGAAGACTAAGGCAACCTGACATCAGTTTCTGAGTTCC---CTTCCATATTCTCAAGGTACAGATTTCTGTTTTTCACTCCACTTCACAAATATATTCATAAGTTTTTGGTACAAATTCTCATCA---tagaagaaatgttttctttttccttctttgtgtttttgaaaTAAAGTATCTCTTATCTACGATGTAATAAACAGCATTTAGTACACATTCATTTTGTGTTAA-TACAGTGCTAGC

a score=12257
s chr3            95529383 621 + 160039680 CAAAATACACACAGATAATGGTTATGCTTCTTCTGTGTCCTTCCTTTAAGCAGAAGA--TGGCTGTTTTGGATGCCCCTGGTGTGCTCTGTGGCAATGGAGCAACTGCAGAGAGACCCTACCCTGGACTACCATTGGGATCTCTGGAAGAAAACCCATGAGAAAGAATACAAGGATAAGGTAGAT--GATTGCCACCCGAGCAGTGTGCTTTTGCTC----AGCGCCCTGTTTTCCCCATCCCCAGATGACATTTGAAAAAGTGGTATTTTCTAGATGTATTGTGTACTTATTTCTGGCCAGATATTGCTTTGAGTA-----------GAAACAAGGCACA-TTCTTGTTGCTATGG--------AGCTCAT--GTTACCGTGACAGTGT-TACAGTGCTGATGGTGATGGACAATG-AGAACAGATAAAGCAAGACATGGGTGATGTGGTGACCTGGAAG--------------ACAGTGGTGATGCATCCTACCAAGGATGCGGTGGGAGGGCGAAGGAAAGGCCAGCAAATAAGGCAACATTAGAGCCGAGGACTGATAGAA--AGGGCAATAAACAAAATGGGTGGAAGGGAGGGACCGTCCTGGGCC-AAGAAACACATTCAGGACTGAGGAAAGACCACATTAGGCACATTTGAGGAACAGAAA
s HiC_scaffold_1 140693685 627 - 233722169 CATGATATGCAC---TAAGAGCTCCGCTTCCTGTGTTACCTTCCTCCAACAGGATGAAGTGGTTGGCGTATGTGTTTGCGGCGTTCTCTTTGGCAATGGCACAACTGCACAGGGATCCTACCCTGGATCACCACTGGCACCTCTGGAAAAAAACCTATGGAAAACAATATCAAGAAAAGGTAGACAGGGTTAGCACTTGGGCAATATGCTTTTACACCAGTACCATCCCATTTTCTCACTCTCAAACCTGTGTTCTTAAAAGCGGTATTTTCTAGAAATAGTACGCGCTTATT----------TATTGTTGTGGGTACGGTAcagcaggaaacaaaacaaagttcctGTTACTGTGGCGAAAGTAAGTTAATAAGTAAACAAACAGATATATGCAGTATGTTGGATGGTGGGGAGGGcagtacagaaaaataaagccTTGATTACAATGAGGAACTGATAGGGCCATGGACAGTAACAGTGAGAATCCATACC--------CGTGGTATAGTTGTGTCAAAAGCGCCAACAGAGAG--------CTGAGCAGGGAACTGGTAGAAGCAAGGAAGCAAGCAAAATA---ATGATGGAGTAAAAGTCCCAGGCCAAAGGAATAC-----------AAGGAAGAGAAGATTTGGCGTGTTTAAGGAACAAAAA

a score=4289
s chr3            95529466 63 + 160039680 CTCTGTGGCAATGGAGCAACTGCAGAGAGACCCTACCCTGGACTACCATTGGGATCTCTGGAA
s HiC_scaffold_1 140692414 63 - 233722169 CTCTTTGGCAATGGCACAACTGCACAGGGATCCTACCCTGGATCACCACTGGCACCTCTGGAA

a score=34306
s chr3            95530269 927 + 160039680 GAAATAAAAATAGACATTTAAAAAATGTTATGTGGACACAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGCGAGCCGGACGGGCACTGGGTGACTCTGTGCCTCGCGGAGGAAAATCAAGTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAAGCAAAATGTCCTCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAAAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGGAAATTTGAAGACATGGCAAAGGCTGACAAGGCTCGTTATGAAA-GAGAAATGAAAACCTACATCCCCCCAAAGGGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCAGCCTTCTTCTTGTTCTGTTCTGAGTACCACCCCAAAATCAAAGGCGAGCATCCTGGCTTATCCATTGGTGATGTTGCAAAGAAACTAGGAGAGATGTGGAACAACACTGCAGCAGATGACAAGCAGCCCTATGAGAAGAAAGCTGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTGCCTACAGAGCTAAAGGAAAACCTGATGCATCGAAAAAGGGGGTGGTCAAGGCTGAGAGAGCaagaaaaagaaggaagaggaagatgaggaggaggaggaagaggaggaagaagaggaggaagatgaagaagaagaagaagaTGATGATGAATAAGTTGGTTCTAGGGCAGTTTTTTTTTTCTTGTCTATAAAGCATTTAACCCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAATTTGAAAAAAAAAatgttatgtggatg---------------agtgttttaccttcatgtatgtctgtgtgccatgtgtgcag
s HiC_scaffold_1 112003508 785 - 233722169 gaaataacaat-----tttaaaaagt---------------------cagtacaTGGAGCTGCACAGAGACAGTGCGGGGGCAAGTGAGAGCCAGATGGGCAT------------------------------------------GGCAAAGGAGGGCCTAAGAAGCTGGGGGGCAAA-TGTCATCATACGCATTCTTTGTACA------------------------------CTCAGATGCTTCCATTAACTTCTCAGGCTTTTCTAAGAAGCGCTCATAAAAATGGAAGATCATGTCtgctaaagagaaaggaaaatttgaaGACACGGCAAAGATGGAGAAG--CCAttatgaaaagagaaatgaaaacttacatTCCTCCTAAAGAAAAACCAAA-----GTTCAAGGATCCCAGTGAGCCTG---GGGCCCCTCTGGCCGCCTTCTTGTTCTGTTCTGAGTATCCTCCAAAGCTCAGAGGAGA--ATCCTGGCCTTGCCATTGGTGACTTCACAAAGAAACTGGGAGAAATGTGCAAGGACACTGCATCAGATGACAAGCAGCCTTATGAGGGGAAGGCTGCCGCACT-AAGGAATAGTGTGGGAAAGACATCATTGTCTCCCGAA-TAAAGGAAAACCTgatgga--gagaaaggaagctgtcaagac-----------gaaaaagaaaaaaaaggaagatgaagagGATAAGGAcaaagat---------------------gaaacagaaaatgACTATGATGAATCACTTGGTTCCAGTGCA------TTTTTTTTGTCTATATAATA-TTAAACTCCCTGTACACAActcattcattttaaagaaaaacagtgaaaagtaAAGCTCTGTA-AGATGTGTTTTAAGCTGTGCAATGTCTTTCTTTTATATACGACTGCAT---ATGTCTGTAG

a score=34233
s chr3            95530307 737 + 160039680 CAGCCATTGCAGTACATTGAGCTCCATAGAGACAGCGCCGGGGCAAGTGCGAGCCGGACGGGCACTGGGTGACTCTGTGCCTCGCGGAGGAAAATCAAGTAAACATGGGCAAAGGAGATCCTAAGAAGCCGAGAAGCAAAATGTCCTCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAAAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGT---TCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGGAAATTTGAAGACATGGCAAAGGCTGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTACATCCCCCCAAAGGGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCAGCCTTCTTCTTGTTCTGTTCTGAGTACCACCCCAAAATCAAAGGCGAGCATCCTGGCTTATCCATTGGTGATGTTGCAAAGAAACTAGGAGAGATGTGGAACAACACTGCAGCAGATGACAAGCAGCCCTATGAGAAGAAAGCTGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTG---CCTACAGAGCTAAAGGAAAACCTGATGCATCGAAAAAGGGGGTGGTCAAGGCTGAGAG-AGCaagaaaaagaaggaagagg----------------------------------------------------------------------------------aagatgaggaggaggaggaagaggaggaagaagaggaggaagatgaagaagaagaagaagaTGATGATGAATA
s HiC_scaffold_1 220339613 800 - 233722169 CAGCTGTTGCAGTACATTGAGCTCCACAGAGACGGCACCAGGGCAAGTGAGAGCCTGATGGGCACTGGGAGAATCTGTGCATCCCAGAAAAAAA-CAAGTAGACTTGGGCAAAGGAGATGCTAAGAGGGCAAGGGGC-AAATGTCCTCATAGGCCTCTTCTGTGTGAACTTGCAGAGGGGAGCACAAGAAGA---ACCCAGATGTTTCCACTGACTTCTCAGAGTTTCTTCTTAAGATGTGC-CAGAGAGGTGGAAGGTCACGTCTGCTGAA------GGACAATTTGAAGACATAGCAAAGGTGGACAAGGCTTGCtgtgaaagagaaatgaaaatgtgtgtTCCCCTAGAGGAGAAGTGCAAAAGAAGCTCAAGGATCCCAACACACCTAAGAGGCCTC--TCAGAC-----CTTATTCTCTTCCGAGTGCCACCCAAAACTCAAAGGAGAACATCCTGGCCTCTCCAGGGGTGATGTCGCTGTGAAACTGGAAGACAAGTGGG--CACACTGCAGCAGGTGACACACAGCC---TGGGGAGAAGG-TGCCAAGCTGCAGGGAAAACACAGGAAGCACGTCGCTGCCTCCTACCGAGCTAAA-GAAAGCCTGGTGCGGCAAAACAGGGAGATGTCAaggcagagagcagagaggaaCAGGAGAGCGAGGTGGACacggctcagcagcacagcgcctgcctggcaagtagccTCTCTGTTCACTTGATTcttgtaccaaaataaaaaataacaaaagaagaaagagaaggaagatgaagagacggaggaggagcaggaggaagatgaAGGTGATGATGATGAATA

a score=19857
s chr3            95530410 601 + 160039680 CATGGGCAAAGGAGATCCTAAGAAGCCGAGAAGCAAAATGTCCTCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCACAAGAAAAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTGCTAAAGAAAAGGGGAAATTTGAAGACATGGCAAAGGCTGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTAC-ATCCCCCCAAA---GGGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCAGCCTTCTTCTTGTTCTGTTCTGAGTACCACCCCAAAATCAAAGGCGAGCATCCTGGCTTATCCATTGGTGATGTTG-CAAAGAAACTAGGAGAGATGTGGAACAACACTGCAGCAG------ATGACAAGCAGCCCTATGAGAAGAAAGCTGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTGCCTACAGAGCTAAAGGAAAACCTGATGCATCGAAAAAGGGGGTGGTCAAGGCTGAGAGAGCaaga-----aaaagaaggaagaggaagatgaggaggaggaggaagaggaggaagaagaggagga
s HiC_scaffold_1 116889509 599 - 233722169 CATGGTCAGGATAGGCCCCAACAAACCATGGGACAAAGTGTATGCCT-TGTATGCCTTGTGTAGACCTGCTATGAGGAGCACAAGAAGAAGCACCCTGACTCCTTGGTCAACTTTGTGAAGTTTTCCAAGAAGTGCTTGGAGGGATGGGAGACCATGTCTGCCAAGGAAAAGTTGAAGTTTGAAGATACGGCAAAAAGTGATAAAGCTTGCTATGACAAGGTGGTGAAAAATTATGGTCCTCCCAAAAATGgtgatgagagaaaaaaattt-----cctaaatGCTCCTAAAAGACcaccatctttcttttttctgttttgctctgaaTATTGCCCAAAGATCAAAAGTGAACA--CAGGCCTGTCCATTGGAGATACTGATGAAAAAGAAAGGTGGGAGATGAAATATGGTCTGAGCAGTCAGCCAAGGTAAACAACTATATGAACAACAAGCAGCTAAGCTAAAAGAGATATATGAAAAGGATATAGCTGCATATCATGCCAACGGCAAAA-----GTCTAGGAGGAAAGAAGAGTC----CTGATAGCCCAATAGGCTCAAAATATGAACCAGAAGAttgaggagga-gaggaagaagatgaTGATAAGAACGA

a score=9951
s chr3            95538342 515 + 160039680 GAAGGAAATTCACTGTAGATATCatatatttaataagtatcta--aaattaaaaac----aataatttgaattaaaatGTGATTTTAGCAGTTGTTTTGCATGTATTCATTTGCCTATATGTTTTTAGACAGATCCACAG---TCAGTAGGATGCTATTTGGGGTACTagagatgctcagcagttaatagcaccttccgctcttccagaagactcaggctcagttcccaacacccactttgggtggctcacaaaccactctccctagctccatgtgatctgatgc-cttcttctagcctctgtgctcacatgctcacacatacacatatgaGGGGGGCGGGTATTAAGAACAATAAGTTCACTTGCATTCCTTTTCCTTCTGTTTCAGAATGAAGAAGAAGTACGGCGTCTCATCTGGGAAAAGAATCTGAAGTTTATAATGATTCACAATCTCGAATATTCTATGGGAATGCATACCTACCAAGTGGGCATGAACGATATGGGAGACATGGTAGGTAAACCACA
s HiC_scaffold_1 140701322 359 - 233722169 GAAGGAAATTCATTGTGTATATAACATATT--ATTAATATCTACCAAAGCAGATATTGGTAAGAATTATAATTAGAATGTGATTTTAACAGTTATATTggatatattcatttatttgtatgccCTGACATAACTACACTGATTTTCATACAGTGCTATTTTCATTATTGAATATG----------AAT------------TTGTCCAGAA--------------------------------------------------------------TGAAATATAACGCTCTTCTCCTACCCTGTATGTT--------------------------------------------------------------------------------AGAATGAAGAAGAAGTCCGGCGGCTCATCTGGGAGAAGAACCTAAAGTTTGTGACGCTTCACAACCTAGAACATTCAATGGGAATGCATTCGTACGATGTAGGCATGAACCATTTAGGAGACATGGTAGGCAAATTACA

a score=16382
s chr3            95545203 369 + 160039680 GTCTGCCTTCCAATGGTCTGAGAGAGAAGGAGCCCTCAGTGGGGCAGGCAGCTCTTCCTGGCAGAGCTGG---------AGTTGTCTTCTG------CCCTGC---------GGAAGCCATACTGATCCCGGACGGATTCTTCTCTGTTT----TAGGGTTCTTGTGGTGCCTGCTGGGCTTTCAGTGCTGTGGGGGCCCTTGAAGGGCAGCTGAAGCTGAAAACGGGGAAGCTGATATCCCTCAGTGCTCAGAACCTGGTGGACTGCTCAAATGAAGAAAAGTATGGGAATAAAGGCTGTGGAGGCGGCTACATGACCGAAGCTTTCCAGTACATCATTGATAATGGGGGCATAGAGGCAGACGCTTCCTATCCCTACAAAGCCACGGTGCGTCAC
s HiC_scaffold_1 140704758 384 - 233722169 GTCCTCAATCCCACTGTctaacagagaaagaaact--agTAGGGGAG----CCCTTCCC--CAGAATTAGGGACAGAGAAGCTGTGCCCTGGTACCACCCTGTTGGTGTGATGGAAGCCATGCTTA--CTGAGCACCTTTGTGACTGTCTCTTGTAGGGTTCCTGTGGTGCCTGCTGGGCTTTCAGTGCCGTGGGAGCCTTGGAAGCACAGGTGAAGCTGAAAACAGGAAAGCTGGTGTCTCTCAGTGCACAGAACCTTGTAGACTGTTCAAct---gaaaaatatggaaataaaggTTGCAATGGTGGCTTCATGACCGAGGCTTTCCAGTATATCATCGATAATAACGGCATTGACTCAGAAACTTCCTATCCCTACAAAGCTGTGGTAGGTCAC

a score=9372
s chr3            95545318 236 + 160039680 CTTCTCTGT------TTTAGGGTTCTTGTGGTGCCTGCTGGGCTTTCAGTGCTGTGGGGGCCCTTGAAGGGCAGCTGAAGCTGAAAACGGGGAAGCTGATATCCCTCAGTGCTCAGAACCTGGTGGACTGCTCAAATGAAGAAAAGTATGGGAATAAAGGCTGTGGAGGCGGCTACATGACCGAAGCTTTCCAGTACATCATTGATAATGGGGGCATAGAGGCAGACGCTTCCTATCCCTAC
s HiC_scaffold_1 140622146 230 - 233722169 CTTCTCTGTACCCCACTCAGGGTCAGTGTGGTTCCTGTTGGGCTTTCAGCTCTGTGGGTGCCCTCGAGGGCCAGCTCAAGAAGAAAACAGGCAAACTCTTAAATCTGAGCCCCCAGAATCTGGTGGATTGTGTA------------TCTGAGAATGATGGCTGTGGAGGTGGCTATATGACCAACGCCTTTCAGTATGTGCAAGAGAACCGTGGCATTGACTCTGAGGACGCCTATCCCTAC

a score=5864
s chr3            95546785 183 + 160039680 TTTTTTGTAGGATGAAAAGTGTCACTATAACTCAAAAAATCGAGCTGCCACGTGTTCAAGGTACATTCAGCTCCCGTTTGGTGACGAGGATGCCCTGAAAGAAGCAGTGGCCACTAAAGGGCCTGTCTCTGTGGGCATCGACGCCAGCCATTCCTCCTTCTTCTTCTACAAAAGCGGTAAAGA
s HiC_scaffold_1 140625519 183 - 233722169 TTTCTTCCAGGAGGAAAGCTGTATGTACAATCCAACAGGCAAGGCTGCTAAATGCCGCGGGTATAGAGAGATCCCTGTGGGCAATGAGAAGGCGCTGAAAAGAGCTGTGGCCCGCGTGGGACCCGTCTCTGTGGCCATTGATGCAAGCCTGAGCTCCTTCCAGTTCTACAGCAAGGGTAAGGA

a score=7891
s chr3            95550061 252 + 160039680 ACGACCCCTCCTGTACGGGCAATGTGAATCATGGTGTTCTTGTGGTTGGCTATGGGACTCTTGATGGCAAAGATTACTGGCTTGTGAAAAACAGGTAATACATTAGCACATGAGTGTTGGCTTTATTGTCAGGACTGGGAGGGTACCTCAGCAAATATACTCTTGCTGTTAGGATGCTGGTCACCATAGCAGCAAGGATGTGCATTTGTAGCTTCTTACAAAGCCCCATGGGAAATTACTCACTGCCCCACt
s HiC_scaffold_1 140708472 223 - 233722169 ATGACCCCTCCTGTACTCAGAATGTAAATCACGGGGTAGTAGTGGTTGGCTATGGTAACCTTGATGGAAAAGACTACTGGCTTGTGAAAAACAGGTAATATCTT--CATACTAATGT----ATCATTAATAAAATCAAGTGTG---CTCTGTGAAGA--------CGATCAGGGTGCTG------------ACAATGATAAACACTGACTGCTTCCTGCAAAGTGACATTGTAAATTACTCAATGCCCTATT

a score=10733
s chr3            95556006 517 + 160039680 GTTTTAGGGGAAGCAAAGAGGtaaaatatagttttat-----tatattattttgtaattttGCTGTTTTTTTCTCTTTTTATAGTTGGGGCCTTAACTTTGGTGATCAAGGATACATTCGGATGGCAAGAAATAATAAAAATCACTGCGGAATTGCTAGTTATTGCTCTTACCCAGAAATCTAAACCATTTCTTCTTTT--------------------------------------------------------------------------------------------------TCTAACAAGTCACAAAGATGGAATATACTCTAACTTAA-TTTGCCTGCAATATCCAGAGGAACCAAGTGTGTCGTGATCAATGTGTAGTTACTGTACTAACTAGGTTATAG-CTATTTTTACACCCTGTTGTCTAGTGT-TTTCTAA--------------------------------------------------------TAACCATTTGTAACATGATAGCCCCAAAGTGCTTAATAAAATCTGTCATTTCAAATATCTATTATTGTCACAAATGATTTTTTTCAAGTCGTCCTTAGATAACATTTATACCCTATCATGAACA--------AGGCTATGTTAGTGATGAGCAGTAGCTATTGTGATGAAGAAAACATTGTTATAAA
s HiC_scaffold_1 140711584 665 - 233722169 gctttggaaaaaaaagagaaaaagataataatgTTATCTGCTTCTATTTGCTTCTAATTTTg--ggatatttctttttctacagCTGGGGCCTCTACTTTGGCGATCAAGGATATATTCGGATGGCAAGAAACCGGGGAAATCATTGTGGGAATGCTAGGTATAGTTCTTACCCAGAAATCTAGATgaactcttcattttattttatattttttggtaccaggaattgaatttaggaccctgcactttccaggcaggtggttgtgctgctgagctatatctatGGCAGATCTCTTCATTTTACAAGTCAAGAAGATGAAA---ACTCTCCGTTAATTTTATTTGCTGTATCCA---GAAATAAGTGTA--ATGATCAGTGTATATTTATCATACTTATTAGAAAATAGTTTGCTTCTTCACTTTATAACATTGCATATCTCTAAAACAAGtttgcaaaataataaattaataatgtgCTATCGATATGAAAATTAATTTGTAACTTTTTATAACTGGCTGGCCTAAGAGAGCTCAAT-AAATCTATCACTCCAAATTTCTCACATTGTTACA--------TGTTCAAGTTATTTTTTGTTAACTATTAGACTCTCTCATAAAAATGTTAGTTATGGTACACTACTGATGAGTTATGGAAACAGTCAT--AGAAAGTA-GGTTATAAA

a score=23949
s chr3            95562264 722 + 160039680 GACTGTTAAACACATTTTGCT--TTACTCTTGGGCCATTAACCCTGA-ACACACCCCGGCACCTTATAATTTGCAGTAACTTTTTGGGGAT----GATGATTTTGGA--GAATTATTTAGGAAAGTACTGTGCTTATGCAAAACTAGACTCTGCTTTTAAGCTCATGGAAGCTTTGTTTTCAATAAATGTCAATAAAATGTTTTTAATTTCCCTTGAATTTTAGAGTGCATTGGTATTTCCCAATAAGATATCAACTGAGCATCAATCTTTGATGTTTGTGAAGAGGCTCCTAGCTGTTTCAGTATCTTGCATCACCTATTTGAGAGGAATATTTCCAGAACGTGCTTATGGGACAAGATATCTGGATGGTAA-------TCTACAATACTTAGGACCTTCTTTGTT------CTTT---ACTTAGAGAATGTGAtttttggtagtaattttattgatgtaattcac----------ataa------------cctgacaattca-----ccaaagtatatagttcaatga--tacagtgctcacagcattatgcaattaccatca----taattttagaaaatttcaccactgcctccccgcaaac-----atc--------cacaataaatcattctc------tcttcctaa--cgaggttaaga----gctgctttctgtttcagtgaatatacctattctggatatttgtcttaaaaggaatcatgcagtatgt-----tctttctaactgacttctttcacttaatcataatactgt-------------------aacatggattaataattgattcctttt
s HiC_scaffold_1 140722918 819 - 233722169 GATTCTTAAGCACTTTTTGCACATAACCTTTATGCTATTACTCCTTAGAAACACCTTCACATTTTACAAAACATTATGCTTTTCTGGGAATTACTAACCACTAGGGAAAGAATTCTTTGGGAGAGTGCCATGTCTATGAAAAAATGGA-TCTACTTT-GAGTccagggaaattttatttttaataaacataaatagaat--ttttaatttcttttgaatttcagagTGCATTAGTATTTCCCAGTAAGATATCAACTGAGCAGCAGTCTTTGGTGTTAGTGAAGAGGCTCCTAGCAGTTTCGGTATCCTGCATCACGTATTTGAGAGGAATATTTCCAGAATGTGCTTATGGAACAAGATATCTAGATGGTAAAGTAATGTTTAAGATTtttgggaggttttttttttgcttgctttaaaACTAAGTGAGCTTGGTTTTTAATAGCAACTTTATCAATAGTATACACTATTAATACTATAATGTTGATATATTTCTGGCAGtccattcatttaaaatgtatagttCAATGATTTTTAGTATGTTCAGAGTTGTGCAACTACCACTGCAGTCAATTTTTTACATTTCCATCAC--CCTAAAAGGAAACTGTATATCACTTAGGTCACCAT---TCATTCCCCCCTAACCTTCCCAGTCCTAGGCAAACACCagtctactttctgtttctatacATTTAGTTATTCTGGACATTTTATGTAAATGGAATTGTATAGGATATGAGGATTTTTTTGACTGGCTTCTTTTACATAG-CATAAAGTTGTCAGGGTTCCTTCATGTTAGAACATGGATTAGTACtccatctttttt

a score=12817
s chr3            95566509 807 + 160039680 ccacacatacatggtgtacccacacgtacacaTA-GAACACAAAGCAAATACATAtaatt---aattaattaactagttataattacttatgtagttatttcatt-TTTCATTAAGATCTCTGTGTCAAAATTCTGAAAGAAGATAAAAATTGTCCAGGTTCTTCACAGCTAGTGAAGTGGTAAGTAAAAGAATACCTAAAGGCAGAAAATTACTATTTT---TCTAATCATACTCTTTATATGTTGAATACTTTTCAGTATATAACCAGATTTTATTGATTAACCCTTTAGCCCTGGGTACCATGTTTTTAGGTCTTTGGATTTATGTATT--AATTTTTTAAAATTTCATGCTCCATGTAAATAGAATTCATTTTTATTATAACTGTACAAATAGCTGTCAGATATTTTATAGTTTCCCTTCTGTCCTCCCATCTCCATATTTCTACTTCATTGTTATTATTTttctttttttttttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacacaccagaagagggcaccagatctcaatgtggttgctgggattcgaactcgggacctttggaagagcagtcaggtgctcttacccactgagccatctcaccagcccTGTTTTTCTTTTTTTAATATTttttttatttttgaaacagggtttcactgtatagccctggctatcctaaaactcactctatagaccaggctggccttgaactctcagagatctgcctggctctgcctcct-gagtgcaggggattaaaggcttgcacccactgcctggATGGTTTTTCTTTT
s HiC_scaffold_1 140724893 607 - 233722169 CCTCACATTAACAATATACCTACA-ATACAAAGATGAAgataaaatctttatttaaaatttctaattgttTA-CTATTCTTAAATAACTCCATAtctgtttcataattttttttagatCTTTGTGTCAAAATTCTGAGAGAAGATAAAAATTGTCCAGGATCTACACAGTTAGTGAAGTGgtaag--aaaaaatacttaaaaatagaagattatatttctaaatcaaataat----tttatacattagATGCTTTTCAACATTTAACCAAGTTTTAGTGATTTACCATTTAGGACTAGACACTAGTCTtgtagatctttgaatttttgtattaaaattttcctttacttCATCCTCC----------------------------------------------------------TATCCCTTATGTCAT------TTTGTATTTCTGCCATGttgc--ttgtttctcttttcttcttt-----tttct---------------------------gctg------------------------------------------tactagggattaaaccccaga-------------------gtactct--accactgaactatattcccagcc-----------tttttaa----tttttta-ttttgagacaggattttgttaAATCACT------------AAACT----------GTCAatttgggctcaaactc---atgatcttcctgccttaacctcctagagtgc-taggattataggcttgcatCATCATCCcaacatgtttctttttt

a score=32957
s chr3            95575185 1310 + 160039680 ATtcctaaaattattgcactagggatttaagtttccaatacataaacttttcaggcaa--ttcaaactacagcCCTTACCCACTCTGCTGAGGTGTGACTCCTCCCCCACTTGACTA--------TTTCTCCCATTTAATATCTGTCACAGTCATTGCAGTGAATCGGGGACTC----TTTCTCCACAACTTAAGTACCAAATCCCA-ACCATCAGCATTAACTATGAGCACTTGAAACTCCAGTAGACCAATAGGAAATTAACACATTAGAGGAAACTACTGACAGATTGTTTG-----------AAAGCAATGTTTACATTTGGCAGTCAGAATTATGTATCAGTTACATAACTTTAATATTTTCTATTTAAGACAATTTCAGAATGTTACCAGTTTAAATTCAAGTACACCAAAAATGGACCAATCATGGACTTTATAAGGTATTGTTCTATAGTTTTCCTTTTATATTA----------------------------------CCAGTTGCCATTTATT-ATTA-TGCTATTTAGCTAGACTTCAAGGTTATTTCTGAAATTTCTCAAACTCCCAGTTAGTAATTTGACTT---------CACAAAATGGAGTAGTGgaatatgaggttgatgtggctgtgacatctgtcaaacattgttcatccccaatgttaat-------ttggctgacctggcagcctagcttggtgctcccttcctttatcacctctcccagtgatt--tactcccaatgttttacactcagttgaagC-----------TAGTGGGGGAATGTT------CTTCATTCAGGCTTTGAAACCTCAGACAAGCTTTCAAAATGGAGCAA-GACTTAAAATG-CCACAAGACAAAATTATGTG-CTGATTATATACTATTT-----ACAAAAAAGTATTTGAGTGGTTAGAAATATATTTAAAATCCATCATTTATTTCCTTTAAA---CATTGTATAAAATGAATAATGTTTATTTTATGTATGTAAAAC---ATTTAGCTT---------ATTATG-ATGTTAATAGTGATACTGAGTTTTTATAATAGTGGCATTAAG-ATATTTTGTGATAACA---------------------TTCAACCGGTAACTTTT---------------TTTTTTGAA----------------------------------------------GGAATAATCTCAA--ATTGTTAAAATGTGAACTAATGTTAGAAGTCACAAATC-----TTATGAAAGAAATTTATTTCCTATTTTCTAGCAAAAATCAAAACAATAAATCTAGTACAACATCTGCTGACACCAAGAAAGCAAGTATTCTCCTCATTCGGAAGATTTATGTCTTAATGCAAAATCTAGGACCATTACCTAATGATGTTTGTCTGACCATGAAACTTTTTTACTATGATGAAGGTACTATTTGTTGCAATATGTCTTGTTTTAATT----------------TTATTTCAAAAATTGTTTTCCATTTTTAATGTTT
s HiC_scaffold_1 140730542 1481 - 233722169 ACTCTAAACACTGTTGCATTGGAGattt------tcaacacatgaattttgggggAGACATTCAAGCCATATCACTTAATCATTCTTCTGAGATCTGCTGTTTTCCTCACCTGCCTACTAAGAAGTTCTTAACATTTTATACATACAACATGCTTTGCAATGAGTGAGAGAATAAAGATCTCTCTGTAA-TTAAATTCTAAAGCCCAGATTATGGGAATTAGTT--GAGATTTATAAGTATCATTGGGCCAATAGGAA-TTAACATGTCAGAA-AAACTATTGACAAAATGTTGACTCatagaaaaacagtaaaataactaCTTACCAGGAAGAATGATATATTAATTACATAATTGCAAtgtttt---tttaagacaatttCAGAATGTTACCAGTTTAAATTCAAGTACACAAAAAATGGACCAATCATGGACTTTATAAggtattgttttataattttctgttcgtattatatacacacacacacacacacacacacacacacacacactaccatTTATTCATTAATGCTATGTTGTTAAACTTCAGTATTAATTGTGAAG-------AGctgggcactggggattgaacctaaaaCCTTACATATAATAGGCAAGTACATTATCA--TTGA----GCTACATGCTCAAtcctactttattttttgagagtctTGGTAAGCTGTGTAGCTGacct------tcaacttg-tgatcc--tcttgtctcagcttcctaagtagctGGTTTTACAGCTGTGTAACACCATGCCTAGCCAACTTCACGATTAATTGTGAAATTTCTCAGACCTCCAATCAGCCATCAAGATGT------AGCTGTCAAAATAGAGTAGTGCCTTGGAGTAACTACAAAATACGATTCTGTGGCTAATTATATACTATTTTAATTGTGGAAAAGGACTTAAGTGATTAGAAACA-----AAAacctattatttggtttttttaaaacaccTTATATAagt------acattaattttatttctataaaattaaatttgggTTTATAATATAATAATGTATATTAATAGTGATACTAAATGTTTATAGTGGTAATTTAAAGCACAATTTATGGTAACAATTTAATGCTGTAATAAGAATCTCAAAGTGTAACATTTAGGTATTAAAAGTGACtttttggactggggatatagctcattggcacagtgcctacctggcaagtgcaaggtaatgagttcaattctcggtacaaaaaaaaaaaagattaaaaaaaggtaatcattttttatgaaagaaattGTCTGATTCTCTTCTAGTAAAAATCAAAGCAGTGAATCTAGCAGGTCATCTGTTGACACCAAGAAAGCAAGTATTCTCCTCATTCGAAAGATTTATATTCTAATGCAAAATCTGGGACCTTTACCAAATGATGTTTGTTTAACCATGAAACTTTTTTACTATGATGAAGGTACTGT---TTGCaatatatcttattttaattgatacttgtgtttttattattgaaACAGTTGATTTCCAGTCCAAATGTTT

a score=23749
s chr3            95577916 513 + 160039680 ATGAGGATTGTGA--CAAGAGGAG---CATCTCTATATTTCAGCTTAGGTTTTTCCAT---CTGA-ATTCAGTCTTACTGTATTTTTATGAGTAGTTGAGCTTCTTCAGTTTTAAAA----ACAGTCATTTATACTTCCTTTTATGCAGTTACACCCCCAGATTACCAACCACCAGGTTTTAAGGATGGTGACTGTGAAGGAGTAATATTTGATGGGGACCCTACATACTTAAATGTGGGAGAAGTCCCAACACCTTTTCACACCTTCAGATTAAAAGTGACCACTGAGAAGGAACGAATGGAAAATATTGATTCAACCATACTAAAACCAAAAGAATCAAAAACACAATTTGAAAAAATTCTAATGGACAAAGATGATGTGGAAGAT------GAAAATCATGTAAGTGTGAACATATTTGAAGAGTTATAAAGTACAGTAGTAGCAAACA-TTGGTTTTGAGGAGTTTGATAGA---TTTTAATGTTTCTAGAAATACTGTAATAAAATACTGTAGT--AAGTTGG-AAGAACTTTA
s HiC_scaffold_1 140741041 529 - 233722169 ATGGGGACCATGAGGCAGAAGGAGGGCAAttcttatttttcagttaatATACTTGTATACTCTGACATTTAATctgcatgtgttttta-aaatagtt------cttcagttttataatagcaca---atttgtacTTGCTTTTTTGCAGTTACACCACCAAATTACCAGCCTCCTGGTTTTAAGGATGGTGATTGTGAAGGAGTCATATTTGAAGGGGAGCCTATGTACTTAAATGTGGGAGAAGTCCCAACACCTTTTCATACCTTTAAAGTAAAAGTGACCACTGAGAAAGAACGAATGGAAAATATCGATTCCTGTATACTGTTACCTAAACAATTAAAAACACCACTTCAGAAAATTCTGGTGGACAAAGATGATGTAGAAGATGAGCAGGAACATTATATAAGTGTGAGTCTATTTAAAGAGTTATAAAATAACTTTGTAACAAATGTTTAATTCTGAGGACCTTAATAACTCTTCTTAATATTTGTGTAAATACTACATTCTAATCATGAACTCAAGGTTGGAAAGGACCTTA

a score=17015
s chr3            95579838 485 + 160039680 gaaaaAAAAAATCCTTTT-TGGTAGTAATTCTAGCACCATTTGTATTTCTAACAAGCATAAGATAGTTGTATTTATCATAT----ACATAAAGCAAATGTGTTCACTAATATTACTACTTAATTGTTTTCATTTATTGTTAAAGTATGTTCAATTTTTCATATTTATATAGAATAATTTTGACATTAAAACTAAAATGAACGAACAGAATGAAAACTCTGGAGCTTCTGAAATCAAAGGTAAGAA---GCTAACAAAAATGTTTATTAACTACTAATTCAATTTCATACCATTT-AACTTTCTTCTCTTCTTATTTTTTTTTTTACAGAACCAAATTTAGATTGTAAGGAAGAAGAAACTATGCAATTCAAAAAGAGCCAAAGTCCTTCAATTTCTCATTGTCAGGTATAAACTTGGTCATTCCATCTGACTTTCAATTTTATTTTGTTCTGTTTTACTTTACttgtttgtttgagcctgggtcttacaaggta
s HiC_scaffold_1 140743477 473 - 233722169 GAATAAATAAGTTCTGTCATGATAGTAATTCTAGGACTATTTTTAAGTCTGACAAGCATCAAATaattgtagtt-ttatatttaaGCTTCACATAAATTCATTCATAAATACTTctacct--ttgatttttttaaacgtc----cattttttgttttcttaacctAATTAGGATGATTTTGACTTTGAAActaaaatggaagaacagaaaaaaaatcctggaGCTTCTAAAATTGGAGGTAAGAAAAAGTCTACAAAAACATAGATTAACTACCAGTTCAGTTTTGTACCATTTTAACTTTTGTTTCCCCCTA------------CAGAACCAAATTTCATTATTGAGGAAGATGAAATTATGAGGTGTAAAGAAAGTCCAAATTTTTCAACTTCTCATTTTCAGGTATAAACTTAATACCTCGATCTGACTTTGAACTTTTTTCTATGATTAtttagttt--ttggattttttattctagatctttcagaata

a score=10954
s chr3            95581189 408 + 160039680 TAAAAAAAAAAGTAATATTCATAGACTCTAAGAACTTCAGAGCTAAATAAAACTTACATATT------tttgtttgtttgtttgtttgAGGGGTCAAAAGagggtcctattatgtaaccttagctagcctggaactcactaaatg----agactgaccccaaatttatgtcagtcctccttcttaactgctgcttgaatgctgagattaaagtgtgaggcactatgtccAAAATAAACTGAAAAATTATGTAGTTAATAGTTTGGACGCCACTTATT---TTGAGTTTAA---TTATTGTATGTAATAAAGTTTTGTGAAATGTCTTTTCTAGGTTGAACAGTTAGTCAGTAAAACATCTGAACTTGATGTGTCTGAAAGCAAAACAAGAAGCGGAAAAATCTTTCAGAGTAAAATGGTAAATA
s HiC_scaffold_1 140744685 382 - 233722169 TGAAAACCAACTCAAAATTACTGGTTTTTATTAACTTAATA--TAAGAAGATCCTAAATTTTGTgtgatttaattttttgtgtgttt-------tgagacaggatcttgctatgtagctcaggctggtc-------cattacatagcctaggctggccttgaactcatagtgatcctcctgcctca--gccttctgaatgctaagattacaggg---------atgtcccatcacaccc----agctgtgtGATTTA-ATTTTAAACCCCATTTGTTACATTGTGGGAAAGTGTTACTAtatg-------gttttat---atatctttcctAGGTTGAACAGTTAGTCAATAAAACATCTGAACTTGATGTATCTGAAAGCAAAACACGAAGTGGaaaaatttttcagaataaaatggTAAATA

a score=58474
s chr3            95587353 2352 + 160039680 TCTTACGTAGTTGTTTTCTTTTAACAGGTCCTTCACGTCTTGGAAT---CTAGTCAAGAGTCAGTGCTGAAGAAAAGGAGAGTTAGTGAACCAAAGGAACATACCTAAAAATTATTTTTCTTATGCAAATTTG--CAGTTCTCAACATTTAAACTAATATGCTGTATTA---TTTGAAGGTGTGC-CTTCTGTACCTCTGAAAATTATTTTGTAGTTC---ATAGTTATTAAACTAA--TAAAAGTTTTAGCTATTATATTGTG---------TTTACCTGAGATAAATCCAAGGGAACTTTTGACTAAA--CAAAAATACAAATGTC---ATTGATTCTGCTCA-TATCCACTGAATA-CAACCTGCCTTCTATTTTAAAGAAAGCTTTTTTTTTAAATGTGTTAAGTTTTAAGGCCCTCTAA----AACCA-TTTTTGAAGT---GTTTATTCTGACTTTAAAATTCTGTAAGGATACACTTTTTACTTATGTTAAAACTGTACCATTTACTTGG---------TGCTATTAAAACAATGTTTGCT----ATTTTGATATAGTGTGTTA------------------TTAACAA------Ctttttttttttaatatttatttatt-tattatatgtaagtacactgtagctgtcttcagacacaccagaa-----------gagggcatcag--------------atttcatta-caga-------------tggttatgagc-------------------------------------------caccatgtggtt--gctgggatttgaactca---------------tgacctttggaagagcagtcggcactctta------------------------accgctgagccatctcaccagcccTATTAACAACTTTTAAATATGTATTTAGAGCAAAAATGATAAAAGCAATGGCCAATAAAAAA----AAGACCGGCATCTTAATACCATGACTAAGATGCTCAGTGTGCAGGGTCTTTCAGGGCTTCTAGTTATTTAATTAACAGAA-AGTGTTCAGCTATTAATTTTGAGAGAATTTAAGTAAGTATATCTTTCGCGAggtggacacatttt------------------------agaacttttgagtggtagtgtgaa-----caattgttttgctgagagacctggaacctagccccacccaagctatttgctt---cctttgcttcagaaaaggaagacctaaaaacttGATCTGTTTCCGTCTTGTAATTTTAGCAGCCATATTCCAAACTGTACAGTAGCTACAGGATTATCAAAGTGGGATAACATCCCTCTAGA----GCTGTTATGTGTGTAATAGTA--------CCCATGCTGTTCAGTATAAACAG----------CACAAACCGAGTCAGATTACGTTTTTCTAGAGGCAAAGTTAAGCT------CAGAGTTTACT------------CTTAGCCTTATTGCTTGGATGCCAACATTTCTTAACCAGCAGTGCCAATACAGACAGCTACAGAAAAACACCTGCTACACTG--AAATTGGCCAACAGAATCCTTTCGTGATTGGCAGCACTGTGCTATCTCACAGAATACTTTGATTGGGTAATTTCATCGGGGTGGGATGCA--GCCT--TTTCCTCGCAGCCACCGAGGTTCCTTCATTGGACAGACCAGCTGTCAGGTTGAACCCAAACCTGCCTCCTTTTGGTGATGTTTGTCTGGATCGCAACACAATAGCCCGGAGGA----CCTCCCCTCGTAAGCTCCGATTGGCTAGAGTCAAACTTGGGGGTTTCTGATTGGCCCAATGAAGAAACACCAAGGTAGGTTGCCTAGTGATCCTGAGGAAGCTGATGTGTTATTCCCTCTCTGCAA-CGAAGGATCAGGAAGTTTGTACTCTCTGTGTGGCTGAGAAGTTTTTCACCTACTGGAACCCGCCTAGGGTACGGGAAACAGGTGCCCTCCAAAACGAGAGCGCGAACTGCAGCCTACGTCCCACTGCAGCTCAGGAGCAACGTCAGGTGAGCA-----AATATAACACTTCTTAACATCCAACAGAGCTGGTCAGTATTTTACTTTAGAGAGAAAGGGTGGTTTTTACTTATTTGTTGTTGCTCATCATGTTT-TCAAGTAGGGTATTTTAACTAATAAGTGGCCACAGGGAAATGATGAATTCCTCAAAGAAAA---TTGCCCCCATTCTCCCCGGGGTGTTAAAGTTTCTTGGATTGGGTTTGGAAATAA-----------TGCCAAATGGAATTGGCACCCTAAGGCATT-GTTCTGT-GTTCTGT---TCCTTCACTCTTCTTACTTCCC-CTGAAAATTA-----TATTTGAAATATACGCTTGTATGAAGAATTGTTTGTAAGACTCTTGGTGTGTAT----------TTCTGGTGCTGTTTAATGAGTATATATTT--AT-------TTGAGCAGTTAAAACGTTAAAGATATTGTGCTAGTTGCTATGGAGAATATAAAAATTAAAAGATGACAATATTTCAGCCC-TGGAGAAGTTTA-ATGTAACAGACAGCCATAACAAAAGAGGGACTATAATAAACATTTTAAAGGGCTTAAGTATAAATTTCTGTTTACATACAACTGAAGAAAAATCCATTTCT
s HiC_scaffold_1 140750403 2566 - 233722169 TCTTA-GTAACTGTTTTCTTTTACCAGGTCTTCCATCACTTCGATTTTTCTAGTCAAGAGTCTGTgccaaaaaggagaaaattcagTGAACCAAAAGAACCTATGTgaaattactttttcttctgCATATTTGGAAAATTCTCATTGGTTAAAGTAA-ATGCTCTATTACTATTTTAAGGTGTGTTCTTCTGTAGCTCTGAAAATTTATATGCAGTTTTAAGCAGtttatacattaaaatgaagtttTCGACCATTATATTGTGGTCCTTAATTTTATCTAAGATAAATCCAAGAGAATTTTGAGACAAAACCAAAAGCATAAATGTAGTAATTGATGTTGTTCAATTTCTATTCCATATCCATCTATTTTCCATTTTCGTGGACAGTTTCTTTACGTATGTATTAAG-------ACCCTATAATACAAACCACTTTttgaaataatgtttattttgataTTAAAACTTTGTa-ggattcatttttttcttttgttaaaactGTATTATGTAACTAGCTGTCACTGTGTTATTAAGACAATGTTCTTTCAATATATTGATCTATTGTATTAACATATATaatgtacaatttaaaaattggtacctatcttttttaaactttttttactACAGGACAAAAAAGATGACt--agttttttaaagacaaaataaaatgttcagtTTGGAGGTTTTCATggcttctaatttttatttaattagcaGAAAGTTTTTAAGTGTGCTTTTGAGTTTTGGTTTTTGTgggaggtttttggttttttgagacaggatctcactatatagttcagactgaccttgaactcactgtgtagcccaagctggccat-----gaacctgtggcaatcttcctgcccagTATCCTGTGTGGTGGTACTGCAGAAGCTCGCCATCACACCTATT---------TAGATATGAATTT----------------------TGCCCACTTGAGAAGTCCAAGCCCG----CTTAGTCTGACAATTTAATAACttggtgag-acactgtctcaaattttgtaagtataaaataaaaggaggagGGCACAGgtt----------ggggatgtatctcagtgta------aAGGTGtgggttcaatcctcggtacaaaaaaaaaaaaaaaggaatgctttGATGTGGGAGTGTGAAAGAGACAGCATTTTTAATGATAAACGTAGGACCTAGGGCATGCCAgcctatttcctttttcctttgctttagaAAAAGG----CTTAAAACTACTTCTATTTGCCTATAGTAGTTTCAGCAGCCATACCCCA---TTTACATTAGCCATGTGCTTATCA----GTAACAAGCACTACCTAGGAAATGATGGTCTGTATTCGACGGTAAAGACGTACCTATGCTGTTCAATGTAAACCAAGTAAATGTCCACAAACTGGCTCAGATCAGGTTTTTCTGAAACCGA--TTAAACTGGCTGTCAGAAACAACCAACTTTAAAATGTTAAGTCTTAT--CTTGAATCCCAACACTTCTTACCATGTTTCTCCAGTACATACTGCTACAGTACA-CACTTGCTACTGTGTGAAATTGATCAACAGAAGCCTTAAGCCTTTGGC--------------TCACTGGACACTTAGAAAGGCCAATTTAATGGGGGTGGAGAGCACAGCCCACTTTTCTCTCTTCCACTAAGGCTCTCTTATTGGATTGATCAGCTGTCATGTTAAACCTAAACCTGCCTC--TTTGGTGATGTTTGTCTGGATCGCAACACAATAGCT-GGAGGAAGAGCCTCCCCTTATAACCTCCGATTGGCTGAACTCAGTCTTAGTCGTTTTTGATTGGTCCTAAGAAGAAACACCAAGGTAGGTTGCCTAGTGATCCTAAGGAAGCTGATGTGTTATTCC--TCTTGCAATCTAAGGATCAGGAAGTTTGTGCTCTATTCGTGGCTGAGAAGTTTTTCACCTAATCGGA-CAGGGTGAGGTGGAAGGAACAGGTGTCCTTCTAAAATAGAGCGCAAGCTGCAGCCTGCCTCCAGCCATAACCCAGGAGTGAGCTCAGGTAAGCAACGGGAAAATTAGATTTCCTAatgtcaaaaaggaaaaaacacttttttaatt----GAGAAAAGTCGGGTTTTATTTACTAATTCTTAGCCATTTGCTTTatcaaatagaa-attttaattggAAGATATCCAGAGGAAGAt----aattcctgaaagaaaaatttttattcccCCCGCCCCAAAGGTTTAAAGTTTCTTGGACTGGGTTAGTAAATAATCCCAATTCAGTGCCACATAGGG-TAGTGTCCTAAAGCATTAATTTTGTAGTTCTgttcctccttcatttttctTGCCTCTCACCAAAAATTATActgtatttgaaataaaacactgtatttgaaat------aaagacacttcatttgtatttgttaaaTATTCACATGCATTTC--TGAGTATTCATTTTAATCTATGTATTAAGCAATTACAGCATTAAAGGCATTATGCTAGTTACTATGGGGGATATAAAACCC--AAGGAGACAATACTTTTGCCCACAAAGAAATTTATAGTTGAGAGACAGCTATAGCAAAAGAGAGACTGTAATAAATACTTTCAAGGAAGTAAGTATAAAGTTTTGGGAAGGTACAGCTAAAGGAGAAACTAATTCT

a score=23557
s chr3            95591317  911 + 160039680 TTTAACGTTACAAAAATTACAAATTATGTGTAACTCAAGAAGCCACATGCTCATGAAGTTTTGCTAACCCATCTTATTTAATTTGGGGACCCATTTCATG--------GTGATACAA------ATTCACTTCTGGGTTGTAGGCAATGCCCAAGAAATAAGCATGAT-AAAATATGGTC-TTTCTAGTGGACTTTTAAATTATTGGTC---ATCACTTTTCGTTGCTTTCTTTGGAATTTAAGCTTGCTATACTTTGAAAAAGAGAATCATGTTCAATG-TTTAT-------------ACTATCTCT------TTCTGTATTTAA---------------ACTTA--CATATTTTCCCATGTATGTGGT------------------GTGTTTATGCGTGTAGGTCTTCTGTGAACCTGTATTTGTTTATTTACTAAAGCACACAGA-------TATTTTTCACATCTCTTT-ACCAACAGGTAAGAATGACAACATTAACTCATAGAACCCGTCGAACTGAAGTAAGTAAGAGCTCTGAAAAGAAAATAGAAAGTGAGGAAGACACTAATCAAGAAAGGAGTCCAGATAATGAAGACCCTGGAGACTCTAAGGATATCCGCCTCACTCTTATGGAAGAAGTATTGCTCCTGGGGCTAAAAGATAAAGAGGTAATG-ACTTAAGTTTTCTAGTTCAATTCAAACACACAAGTCTTAGAATATTTTA-------------GGAA-------GTAA---------GACTCCACCTACATTG-------------GAGTT--------------------------------------------------------------------------------------------------------------------GGAGGAACATGGGAA---AGAGAATATCTACAAGA-TAGAATCCAGAAATATAATTACTTGAAGTATAATTTAATTGGAAAATTATAGATGA---AAGAGATGGATAGCA----------TTGTGTTAGTACCTATTTCCTAGCTTAGTTTGATGGTAGAGCAGTGATCTTTTATTAAACTAAGAAAGAGACCC-ATATAGTGAAGTCTTCTTGAGCTTTGAAGAGAAGTTTCAAAGACAAGAACAACAGcagatat
s HiC_scaffold_1 140753943 1140 - 233722169 TTGAATATTATGGAATTTACATGTTGTACACA----------TTGTGTCCCCATAGTTTTTCGCTGTTTCATCTTACATAACTTGGCAGTCCATTTTGTGAAACAGAAGTAACAACAGAGGACATTTATTCCTCCATTATAGATTATATGCAAGAAATCACCATTCTTAAAAGATGATCGTTTCTACTGGTTGTTAAAATTACTGATTTTGGTCGCTTGTCATTGCCATTTGTGGTGTTTCA--CTGTTGTACTT-GAGAATGATACTAGTCattaatgatttattttggtactagagacCAACTCTAGGAATTTGTGTAtattaggcaagtactctaccactgagctatatatccccacCCCCCTGGTTATCAGTTCTTCCTtaatatatttaagtttgtaAAT---------ACTTCCTCTTCTGTATTTACGTAAGCACATATAAGtatattttttttaacacttcCTTCAGAAACAGGTGAGAATGACCACATTAACTCACCGGACCCGGCGCACAGAACTAAGCAAGAATTCTGAAAAGAAGGTAGAAAGTGAGGAAAACACTAATCAAGAGAGGAGTCTAGATAATGAAGATTCTGGAGACTCAAAGGACATCCGCCTCACTCTTATGGAAGAAGTATTGCTTCTGGGACTAAAAGATAAAGAGGTAACGCAGTTAGGTTTGCTaggctgtctcaaaaacccaaatatTGGAATGTTTTGAACATAATCTGATGGAATATTTTTGTAATGCTAAagtgactttatttattttgtctttctgagacagagtttcactatgcagttcaggctggcctgaaactcacagtaatcctcctgcctcagcctcttaaaggctggaattacaggcgtgtgccaccacacctggcctaacaTGAGGCCATTTTGGGGAAGAATCTGGGAGGGTAGCTGATACTCGGGAGAGTACAATCAAGAAGTATAATTACTTGAAGCATAATGTAATTGCAAAATTATACAGGACACAGGAGA-GGATAACAGTGTAAAGTTTTGTGTTTGTA---GTTTCCCAAGTCAGTTTGATGGTGAAATAATAACCtctcattaaaataagaaataggtCCGATACACTGAAGTCTTTTCAGCTTTGGGATGAAAGTTTTAAAGA----AACGACAGGAAGTAT

a score=8034
s chr3            95603249  993 + 160039680 accctgtctACATTCTGGTTGCCACTTTGTCCTTATTTACAGTGCTACTCTTCTATAATTCTGATGGCAATCTGA----ATTGTCCTTGAAACAGAAGTTACAAGTGGCAAGGAAGAAATG-----------AAGAAGTTATATCCAGCCAT---------------AATGTTTGCACACCTGTTGAGATT------------------ACATATGCTATGCCTGAATAAACTGTCTATTTTGAAGTTATAGTTTAACAATCTAATTGAGCAGCTAAATTGTATAAAAATCAAATATTGAAGTGAAAAAATACTGTCTTCCTTCCTTAAAGAAGAA----------------TAAAG-------------------------------------------------------------------------------------------------------------------TGTGTG-------------------------------------------------TCCCTGGAGTGGCT-TGGTTGGGAGAGAAAAGTAACCCCTGCCTTGGGTCAAAGATCCGGCCCTCATGAAATACAGAGATGTGTCATGAATGTTTATGACTC---------------------AAGCTGAGGTTTGCC---AAGCTAACATTTGCTTT-TTCCTACtttt------agatttttaagacatctcatgtaacccattctggccttca----attcctgatcttcctacttcTTAAGTGCATGTGCCCAGCCCTAACAAACATTTCTTGAAT------------------GCATAAATTTATGATTGA-AAGTTTGTG-CTTTATATTTCATCCCTATTACTACAGAAAAAAACAATA---------ATTGAGCAGATAATA--------TATGTG-TATTATAAAGAATATCAGTCTCCTTTCTTTTTTGagtcaggattggctttgtgctcatagagattcactaaggtgctaggattaaaggcagaca-tca------ccatgcctggcA--------------------------------------AAAATAGTCTATTGTTAAGGTATAGTGAAAACAAATAAG-----TTAGTTGTGATATGTTATGACAGAGGATAGGAAAGGAGTATGTATCAGCACATTCAGGTAAGGAACATAGCCCAGAGAGTAGAGTAGAAAGGGAAACAATGTTATAAAATGTTACCCAGAAAATACAACCCCTACACTCAG---TAGTAAGTACAAAGAGAAGTTGTAAGAGGAACAGATATTGGTTCTGTGTATACAAAGGCATTTAGAGCACTTAA
s HiC_scaffold_1 140761139 1262 - 233722169 ACCCTGTCTCCATT---GTTGCT---------TTATTTGTAGTACTTTTCATTTATAGTTAT--TGGCAATCTGATATCACTGTCATTGAGACAGAAGTTTTACATGgttcagaaaaaatttaaaaacaaataaaaattttcctccAACTGCTTTAATATTGTCTGAAATGTTTGCGCACCTGTTGAGATTTTTAGTTACCAGGATTATACATAAATTGTACTTAAATAAATTATGTATTCTGAAGTAATAATTTAAT--CTTAATTAGGAAGCTAAAttatataaag-tcaaatattgaGCTCAAAAaa-agtctttccttttcttaaagaAGAGACACAGTTATAACTCTTAAAGGCTCAGCAAGGTGGAgcatgccaataatcccagcacgtggaatactaaggcaggagaattgctacaaattggaggccagcctggaaaataCGGTTAATTCAGGGCCAGCCAGAGCTGTGTAgtaagacactgcctcaaaaaaaaaagaaagaaagaaaaaacagttatGATTCTTGGAGTAGCTATAAGGCAGACAGGGGAGGAAACTTAGTCTTAAATCAA-GATTAGTCCCTtgagaaatttggaaaagtttt-----tgtttttgttttttgaaacaagatctcattgtgaagttcaggttggccttgaactcagtgtgtaatTTACTACCACACTTGCTGGGAGAGTTTAAATGGATATT-TATAGCTCACGCTGAGCTTTGCCATGTTATTAAACTACTTACTT-TTAATCATACATTTGTATATTCAAGAAGTATTTAttaggccggggatttagctcagcagcataagcacctgcctggcaagtgtgagactgtaaattcaatccctggtacaaaagcaaaacaaaaaagatgtatttattgAGCGGATAATACTGTCAACTATGAGATATTCTCAAAAAAAT----------TCTCTCCAGggactgg----gcatttagctcagcggcat------aagcacctgccttgcaagcaggcagtcgtgagttcgatccctggtaccgataaaaacgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaattctctctgtAAGCAAT-GTGAAGCCTAATAAGAATAGTTGATTGCAATATGCTATAACAAGTGATTTGAGGGAAGTATTTATAGACACAGCCAAGTGAGGAATGTAATCCAGAGGGTAAGGTGGGA--------------GTGAAATGTTA--GAAAAGGTATGACTCTTGTACACAATTTTTTTAAGTGCAAAGAAGAATT----GGGCAAAAGTGAT-------------------GCATTAAGAGCACTTAA

a score=23632
s chr3            95607792 2196 + 160039680 TCATGTAGTGTGATA-TAAAATAATAACAAAAATATCACAGCTTATTTTTCAGG--CTCTGGCTGGAATTCAGTACTCGTTTCAGAACATTCTTTGTTTTCT---TCCCCCTCTCCTAGGGCTACACATCTTTCTGGAATGACTGTATATCATCTGGACTGCGAGGAGGCATTCTGATAGAGCTGGCCATGCGGGGTCGAATCTATCTGGAACCTCCCACCATGCGTAAGAAGCGACTCCTAGACAGAAAGGTACAATATCCTCTGAA--------------TTATAG-AAGTCAAATACCAATGGTACATTTTGAGAAAATAAGAACATTTGAgggcagaaaagatagttcagcagttaaaaccattagttgttcttgcagaggatccagatttggttcccagtgcccacatggtggttaacagctgtctataactccagtcccagggttctgaatctcttctggcttcctcaggcattgcacacatgtgatgcacagagtacatacgtacaagcaaaacactcacgtacataaaagaaaattaaGAGTGCTAGACAAGGTAACACTGGTTCAGCTGTCCCATCCTCTACTTGGTTTAATTATCTTATATAGAGTCATAGAagttcaaggtcagcctggcctacagggcaagttccaggacagccagggctacacagtgagaccctgtctTGGGGGAGTGGAGGGGAACTCATAGAAACTTGgttttgttttgttttgttttACACAAAAAAAGTCTATCACCTTTGAAA-TGCTGTTGAT-----------TATCTTTCCCTCTGGATGTATGAAATAAAATATTGTGTAGATAGAGGAAATCA--TGAGCCAGGCCTGTCTTAG-TCATCCCAAGGTATTCTCTGAGAACCATTCAGATGT------GTTACATTTACTGAAAATCCCTGCTCTGGAG-GAACTGT-CTCTTAGATACACATTGGCTTAGTCATTTTTTTACATTTACAATGCCTGTCATTCCAAGAATTCTGCTGAAAC-AC-ATTGTTAGATAGAACTGTCTTTGGAGTCTTAATTTTTTTGTCTTAAAGTACATATATTTGGCACTTTTTCCCCTTTTggttttttttggaacagccctggctgtcctggaacttgctc-tgtagaccaggctggc--ctcaagcttagagatccacctgcttctgcctcctgagtactgggattaaaggtgttcgc--caccatggcctggttTGGCACTCCTGGAaggctctcagtatgtaactgtcctggaattcac-tatgcagacccagctagtcccaactctcagagatctacttgcctctgcctcccaagtctaaaactaaaggtgtgcatcactg--cccagTGCATTTGGCATCTTCTTACCACTTCCCTACTTGACATTTGTGGCCTTTTTCAGATTATGTTTTTTCTCTGACTGTATCCTCTTTCCTACTTC---TCCATTCCCTAATATCTTATCAGTTTTTATCCTGTTTGGTGATTTTTCTTTTCAGCTTTACATTACTTCCAGGAAT-TTCATTTCCAAATGTGCAAACGTTTTTTTACCTTTAGCTTCCAGGAACGTA-TCAACTATTGGCTACACATTTCAACTTAGCTATCTTGCATCATTCAAAAGCCAGGCTTGACAG-TGTTCCCCTAAATTAACTTCCTTTTCTGACCTTCCTGCCGTTGTTAGTGGTTTC-------------CAAACTCTGAAAGACACTGTGGAATCT-TTTGTCCATT-TTATTCACAGC--ATTTGTAACTAGGTCCCACTTCAAATG-TAATTTTGTCTTCCTACTACAAAGGCATACTGAACTAAGGTCTTGCATGTCATAG-GCAGTATATTCTGCTTCCTCAC----------ACCTCCTAAGCAGCATTGTGATTGTGGGTA-------------------------------------------------------------------------TTGTACATGGAAGCAGTG----------------TACTCTGTCCTTTCTTTAAGGTCCTGCTGAAGTCAGACAGCCCAACAGGTGATGTTTTGCTGGATGAGACGCTCAAACACATTAAAGCAACTGAGCCAACCGAAACTGTGCAGACGTGGATCGAGCTACTCACTGGTGAGATGAC------------------------------------------------------------TGAAAATAGCTCACAAGCTGCATATTTG-GTTATCTTTGGCCTGCTCGTAAGGTTAGAGGGAAGAGTATAGTAGCACTGCATGCTAGGGAGGGTGGTGTGATTAGCCAGCACCGAAGGATCCCAAACATTTCCACTTATCT-----CCGCAATTCTACTCTGCAAGGttgtt--ttgttttctgacaggatctcgtagcc
s HiC_scaffold_1 140767587 1978 - 233722169 tcatg-agtttgatactcagttaaaaaaaaaaagatcacatcttATTCCTAAGGGGTGCTGACTAA----CAGTACCCCTTTCAGAAcattctttttgttctcttttctcctttcctaggGTTACACATCTTTCTGGAATGACTGCATATCATCTGGCCTGCGAGGGGGCATCCTAATAGAACTGGCTATGCGGGGCCGAATCTATCTGGAACCCCCCACCCTGCGAAAGAAGCGCCTACTAGACAGAAAGGTACAGCATTATCTGTGGACATCCTCCTACCTTCTGGCAAGGCAAATACCAACAATACATTTT---AGAATGAGA----------------------------------------------------------------------------------------------------------------------------TCTGAAT------------------------------------------------------------------------------------------AGTGATAG--AAGATAAA-------TGGCTATCCCATTCTCTA--------AATAAACTTA----------------------------------------------------------------------------ACTATCCTGTGGCAGAGGAAGAAAAGTCATAGGaat----cattgttttgtcttttttttaatgcagaaa----aTTACATGTAAGATTGctgttgatttcttcttttatatgttTAGTTATAACTTTATGAAACAGA-------GTAGGTAGAATGAATCATCTGAGTCAGGTCAGTCCTTGCTTAACCCAGGTTATGCTCTGATAACTATTCA-ATGTCTCTTCTTCCCTTTTACTACAAATCCTTTCCAACATGTGAACTATATTCCTGTATCCACTTT--CTTACTAACTTTTT--CCACTACAACTTCCGTTATT-TAAGTACTCTACCACAACTACAATCTTTTGATATCATCAGcttc---ttttcagtcttttaacCTATAGGTG---GTTTTTGACAACTGCTTCCTACTTGAAACTTTCT-------------CCATTCTTGATCTTTTTCATATAATCTATTCTTGCTTCTCTAACT---GCATGCTATTTCCTTTACTTCTT---TCCT----TTAAATGTCTCAgcttttttatgtctttgtgtgatttttct---atccttttagAA-------GTACTG---TTTACTTTTACAGCCATATCTA---TCACCTGTATGAGATTAACT------------CCAAAGCTGAgagtggtggtgtacacctgtaatcccagcactcgaggc----------------------tGAGCCAAggggattgccacaagttcattgcgagcctgggctgcatagt------gacttcaaggccagtcta-aattacataccaa----gaccctggcaagagag------------------agaagagagaaaaatattaactCCAAAATTTTTAAGCATATCTTT-TTTTCAGCCTCCAGGAATATATTTAACAATTGACTAAACATTTCAACGTGGCTATCCTATATCAGTTAAAA-CCAAATTTACCAACTTTTCCCCAAAATTGGCTTCATGTCCTGTCTTTCCTGCCTACACTAATGGCTTCACTGGTGATTGTTCAGATTCAGAGTTA-ATTATTGAATTTATTCCTCCATTATTATTTATATCCAGTTTGTTACCAGGGCCCATGTCAACTGTTACTTTTGTCTTCCTACTATCACCTCATACCACATTTTAAACTTGTTCAGCACAGAGCAATGTGTTATGCTTCTTTACAGTTCTTCAAAACTCCTAGCCAGTAatatatacatagatagatagagaaacagacagacagacagagctagagaagagagaaagagagacaaagaagagagagagacagagattttaatttgaatgaagtgaaaaattaagatcctttattttttcttttctcaaaggtACTGCTGAAGTCAGAAAGCCCAACAGGTGATGTGTTACTGGATGAAACTCTCAAACACATCAAAGCCACTGAACCCACAGAAACTGTCCAAACATGGATAGAACTACTCACTGGTAAGATGACTCCAAATCATTCacaaaagccagcctgaactacatagtgaaaccctgtctcaaaaaaagatcaaaatcatCCACAAATTCCACACTTGCATTATCTTTGTTCTATCATTAAGGTTGGAAAGAGAAGTTCA--------ACATGTTAAGGTAGCTATTGTTAT--------AACCAAGTTTTCCAAAGATTTGC-CttatcttctgcctgccatgctaCTCTGAAAGCTCTTCAACAGTTTTTTCACAAAAACTAACATCC

a score=47056
s chr3            95616559 1326 + 160039680 tggtggagcacgcctttaattccagcactcaggaggcagagttaggcagatttctg-----agttcgaggccagcctggtctacagaatgagttccaggacagccagggctataaagagaaaccctgtctcgaaaaaccaaaaAACCCAACACAGAAAGCACAAAGTGTGGATCAAAGAGTGAGTTGGCAT-GTTCCTCCATGGATGGAGATTGTGCTTTTAAAATTTTAAACAAGGTCggctgaagagatggctcagcagttaagagcactggctgttcttccagaggtcttgagttcaattcccagccaccacatggtggctcacaaccacccataaatgagatctgacgccctcttctggtgtgtttgaagtcagctacattgcactcatataaataaaataaatctttttttaaaaaTTTTTAAACGAGGCTCAAATAACAAACTGGCTTTTTAAATTTTGTTTTCCACTGTCTGTTTCCCAACAGGTGAGACATGGAACCCTTTCAAATTACAGTACCAGCTGAGAAATGTACGAGAACGAATTGCCAAGAACCTGGTGGAAAAGGGCATTCTAACCACAGAGAAGCAGAATTTCCTGCTCTTCGACATGACCACTCATCCAGTGACCAATACGACAGAGAAACAGCGACTAATGAAAAAGCTTCAAGACAGTGTGCTAGAACGGTGGGTAAATGACCCTCAGCGCATGGACAGGCGAACACTGGCCCTCCTGGTGCTGGCCCACTCTTCTGATGTGCTGGAGAATGTCTTCTCTTGTCTGACAGATGATAAGTATGATGTGGCAATGAATCGAACCAAGGACCTAGTAGAACTGGACCCTGAAGTGGAGGGGACAAAGCACAATGCTACAGAGATGATCTGGGCTGTGCTGGCAGCCTTCAACAAATCCTAAAGCCAGCAGGCGG-GTGTCTCCTTTTCCCGGCTGGCTGGTGACTCTCAGAGACCCA---ATCACTGAGTTCAGTGTGATAAGATGCTATCATCAT----------------------------TTCCCCACTTTTTG------------AATCAGACTCCTGACTTGAGGAGGAAAACTTCATGGCCTCTCTGTCCATCGGCCATGA---CCTTCTAAGCAGACTGTTTCTCCTC----ACTTCCACTCTGTCTGAATGAAAGGGGTGAACCCACACACATCTAATAAACA---ACTCCCATTTCTGGGTTTAGTTTTAACCAGTGTGGTTCTGGATAAACAAGAGTTCCTGTGTGGGGATTAGAGTTTTCCAGCAACAAAATGTGAAGGAAATGAACAGTAAACCA--TATTCAATTTT------TTTTCTCCCTTATTCATGT-TTTCTCAGGCTTTGTTTCTC-CGCTCTGTTAA
s HiC_scaffold_1 140782849 1173 - 233722169 TAGTAGTATATACCTGGACtgccagcacttggggggctgagtcATAAGGATCACAGCCAGCAGTTAGAGGCcag--------acacagtgagttcaaggccagcatgaaatacatagtgaaactctgtctcaaaaaaataaaaa--------taaaaagcataaaata--gatTGAGGAATAAATAAAGATCATTCCTTTATGAATGGAGACtatgcttttcaaattttaacta--------------------------------------------------------cttaagtt----tccaa----------------------------ataaattgg---------------ttagtctttttgt-----------------------------------tctttcttt--------------------------------ctgttcattaTATCGTATTTCT---------TTTCCCCATAGGTGAGACCTGGAACCCCTTCAAATTACAGTACCAGCTGAGAAATGTTCGAGAGCGAATTGCAAAGAACCTAGTAGAGAAGGGTATTCTAACTACTGAGAAGCAGAATTTCCTGCTGTTTGACATGACTACTCATCCAGTGACCAATATGACAGAGAAACAGCGACTAGTGAAAAAACTTCAAGATAGTGTGCTGGAGCGGTGGGTCAATGACCCTCAGCGTATGGACAAGCGAACACTGGCGCTCCTGGTGCTGGCCCACTCTTCCGATGTGCTGGAGAATGTCTTCTCCTCTCTGACAGATGACAAGTACGATGTGGCAATGAATCGAGCCAAGGACCTAGTAGAACTGGACCCTGAAGTAGAGGGGACAAAGCACAGTGCCACAGAGATGATCTGGGCTGTACTGGCAGCCTTTAATAAATCCTAGAGCCAGCAGGTAACGTCCTGTGTTTCTCCTGCTGGCTGATGACTGTTAGAAATCCATCCATCACTGGGTTTAG-GTGATGAAATTTCAtctttatgtttttgttcttattttttgtttgcttgttcctttgtttttgaaCTTTCTTTTTAATCAGACTC---ATTTGGGGAAAGCAACTTTAGTTCTTC----TCCAAAGACCTTGAAACCATTATAAGCAGACTTTACTTCTTCCTGTACTTCcactccat-----------------acacacacacacccaataaatattttctcccatttcttgTTTTAGTTCT-TCCAGTGTGCTTTTGGATAAATGAGAAACTGAATAACAGATTTGGAGCTTGCAAGTAATAGTATGTGAATGAGATGAAAAGCAaaccatttattatatttttctaagtttgttttctaaaatatgtgtTTGATAGCCTTTATCTCTCAtattctgctaa

a score=61724
s chr3            95624486 2638 + 160039680 ATAATTGCCTACATAAGGACTAAAGTGTGAATGAAAA----------CCTTACAAGAAAACTCAAGTC-----------------TCCTACAAGCTAG--CACTGAGTCCTGGA-AAACTGCTGAATATCAGTTT---GTCTTC---------CAATTTTAATTTTTGGTCGTGGGTAACTTGTT-CTAACACCGCTCAAGGCTTGAGCCTTTGCACCAGAGAATAAAGGATTTCTATGTTAACCCGGCTCG--GATGCAACATTCAGCGACTTGCCCAGGATCTGGCTAATAAACTGAACACAGCTTCAGCCCACCCAAGAAGCAAAAATACCAAAGCTTGCTGTCCTGCCCCTAAGGTCCATGCAGGCTTTTAATTGGTTCTGTGGCTCACTCTCTTTCCCGGTTGGTGTTCTAGCTTGCCTGTCGCT-CTAAAGAATCCGCCCACCTCCGGCCAACGCTTATTGGTGTGTCGTTACATCATTGCCCCGTCAAGCCCACTCTCATTGGCTCTCATAGGAGGGGGCGGTCTCAACGTCACGGGCTTGAGCCGCCATTTTGACTGAGCAACCATAGTGACAGGAGCCGGAGCAGCAGCTCAGGTTGTCCCCGTTTCCCC-TCCCCCTTCCCTTTTCCGGCTGACTTCCCGGG--CCCTGCATTACACAGTCCCGGTTCTGCCATGTCCCAGAAACAAGAAGAAGAAAACCCTGCGGAGGAGACCGGCGAGGAGAAGCAGGTGAGGAGAAGGGGG------------GACCGGGGG-TGGCCGCGC--GGGCGGAATACG---CCCCCGCTGCCGCTGATTGGCCGCCTCTGCCTCAGGCTGTACAGGGGTTGGCCACTACTAATGTCGCGCAGGCTGCATTTCGGCGCGGCCTAGTGCCCTGATGTCGATTAGTCAAGCCGATTGTCAATCTGTGGGCTCCCCTTTCTTATTGGCCAGTAGGCCTC-TATTCAGTTCATGGAAGCCGTTCTATAATTGGGCGAGCTCTGGCGTGGGCGGGTGTTTGGAAAGATGAGGCGAATGAAAGGGGGCTGGATGGTGGTCCAGAGCTGTAAATGAGATGTTTGATTAGTAAAGATAAATA---------CCAGACTGGAGCTC--ATCCTTCATCCACAGCAAGATAGAGGTCAAAGTGAAGACATTTAAAATGAACCAGCATTGGGGGAGGGGAAAAGAGTAATTATTACCATGGGGTAAGTTCAGGTGGCAACTTCCTTA----GACCTGTTTGGTAGGGATGGTTTGTTGTTCACCGTCAGTGA----------------------CTTATAGATCCGCTCGAA------------------------------------------------------TTTCTCCGCAGTGGG-ATGTGGTCCACCCACCATCGCATTATGAAAACACTAGTGCCAAACCCCTTCTTCGACACCATATTTGAGTT-----ACTTAACACTGAGCTCAGGGACTCATTAAATACACTTAGTGTTATCTCTGACCCTGTTTGTCAAGTGAAAATACACTagccaggagatggtggcgcacgcctttaatcccagcacttggaa---------------------------------------------ggcagag---gcaggcagatctc-----------ttgagttctgagttcaagaccaacctaatat--------acaccaag--aacccctctctc----------------------agaaaatataaaaATAAAAACAACAAGA--AAAACTAATGG--CATGTTGATTTCTGTTTTCAAGTAT------ATTACTCTGGTA----AATATCTTTAGAA---------------TAAGCCACATGCCTAGCGTCCTCCACAGTGAGACCATATTGCTTCTTAGAGTGTGAATGAGGAGGGAGCCTCTCAGCAGACAAAAGCT----------CCCCTGACCTGTAGGACA---------------------GCCAGGAACTCTAGT-AGTTCCTTTTTT------ATCTTTCCTG------------AGTGAGCTCTGGCTTGCTCTATGGTTCAAGTATCATGTTGAGATACTACCTTTAACCTAGTGTTCACAGGTCAC--GGGTGATTCCTTGAGTGTAATATAAGAACTAACTTGTTTTTCTTTGCTTG--ATACAGTTATCTTGAGCTT-AGGCATTTGAACAAAGGTCTAGCTTTTAAGAGTAGAg---gagcaggaaagattg-----------gttaggaacactcattgcagagcacctgggtttagttcccagcccatggta-gctcacaaccatgtacagttcagtctaggaaa-----------ccggg-----cccagactgaa---------ctcagggcactgggcatccatgtggtacacagccatagccatacgagtctgcagaatacatgcacataaaataaataaaTCCTTAAATAATACACACACTCAACAGAACAGAGTGTAGATAGCATAATT----------ACAAACAGGTAGACCTCTAAGAAAATTTGATAATACAAAGGTTATCAGATATTAGAAGTCATTGTTTTTCAGCCATTAATTTCACTTGG----CGTGTTTTCTTCAGGATACACAGGAGAAAGAAGGGATTCTCCCTGAGAAAGCTGAGGAGGCAAAGCTAAAGGCCAAATATCCAAGCCTAGGACAAAAGCCTGGAGGCTCCGACTTCCTCATGAAGAGACTCCAGAAAGGGGTATGGG------ACACCCTTATACTGTGGCACCTTGGA-------------TGAAGTCCGTAGACATTCTACTGCATGTTTTTCTGTAGCTTTGGTTATTTAGCAGTAGTAAAGATAAATTAGAAACTTGGAAAGAGAAAAGCAAAT-TATGTGAATCTCTGCAATGATGTTACTTCCCTTCTAAC------TATAGGAAATGAAGGATTAATG-GTGGGCATTTGGGTA---GGTGGCAGATGGGGACTGAAGGAAGGATATTAGATACAGAACACCC
s HiC_scaffold_1 140808017 2926 - 233722169 ATGACCGTGTACATAAGTGTTACATTGTGAAGCAGAAACCATAGTGTTCTTGCAAGACGACTTAAGTTAGGATTCGGTATCTCCATTCcacacacaaaattaatgacacaTCGATAAACTGTTGAATACCATCTTAAAGTCTACTCTGATCTACAAGTTGTGTTTCTAGAAATCAATAATTTCCTGTTAACATTGCACAAAGCAGAGTCCTTTCCACTC-AGAATAAATTGTTTGTATCCTG---TGGCTCTCCACTTCGACGTTCTGCAGCTCCCTGAGAACAACGCGGCGGAGACGAAGGAATTCTGAGTctatccaa-aagcaaaaatgccAAGAATAGCAGCCCTGCCTTCAAGATCCTCCGCGGCCTTC--------CTGTGGCCCATTCTCTTTCCAGATTGGTGTTCCAGTTTGCCCGTCGCTTCTGCAGAA----CCCACTTTTAGCCGGCCACTATTGGTTGGTCCTTACGTCACTGCCCCATCTATCCCATTCTCATTGGCTTCTACAGAAAGGGGCGGCTGCAACGTCATGGGCAAGAGCCGCCATTTTAACTGAGCAACCATAGTGACAGGAGCTGAAGCAGCAGCTCAGGTTGTCCCCgtttccccctcccccttcccgtGTCCGGTTGACTTCCCGGGACCCCTGCACTCCACAGCCCCGGTCCCGCAATGTCCCAGAAGCAAGAAGACGAGAACCCTGTGGAGGAGACCGGCGAGGAGAAGCAGGTGAAATGGAGGGGGTGCGGGCAAGCGAACCGGGGGGCGACCGTGCTGAGGCGGGAAACGGGTCTCTTAGCAGTGCGGATTGGTCGCCATGGTCTTAGTCTCTGCAGGGGTTGGCTGCTTCTTGCGTCACGCAGGGTGAGCTCCAACAGGGTCTGATACTTTGGCGTTGGTTGGTTAGATTGGTTGTCTGTCAGTGGTGTAGCCTTCCTGATTGGGTAAGAAGCCTAACGCTCAAGCCGTGGAAGCTATGCTATAATTGGCTGCGCTTGGGCGTGGGCAGGTGTTTGGAAAGACCAGGTGGCTGAAGGGGCTC------GTGGTCTTGGGTTG-AAAGGTGTTTTTCTGTTAGTGGAAACGAGTGACCCAGTAGTCAGGCTGGGGCCCGCAAACTTAAACCGCATGAAGTTGCAGATCGAAGTTAAGACGTTTAAAGAAAACTTGCattgggggaggggagaagaataATTATTACCACGGC-TAATTTAAGGCGACAACTTTCTCAAGAGGCCGATTTTGACAGAGGTCGTCTGTT---CACCTTTAGTGAGGACCGAGTAATACTGAAGTGGACTAGAGATCCAAGTGAAGGTTAAGCCTAGAAAAGATGCTGACAGAGTTGTGACAAGAAAGGCACCACCCTCTTCCTTCAGACTGGGGATTCAGTCCACACGCGATTTTGTGGTGAAAATTTTAACGCCAAATTAACTCCTTGAGTTTGTATTTGATTTGAAACATTTAGTACTGAGCTCAGAGACTCTTGAAATACATGTGGTGTTAAATCTGTACATgattaccaaagaaaaatctaatagCCATAGATTGACTTCAGATTCTTcaaaacaacacacacaaaacaaaacaaaacaaagaaaaaacaaaaaccacaaggCCCATGCAGCTGCAGAGTGAACAGTGAGAGCCCCTACAAGGCATTTGAACTCTTGCTCTTTCCCCAGACTTCCATCACTTCCCACACTAGGTTAGGCactgtctttgtttttgattttcgTTTGTTTGGAGTTTTTTTTGGTGAAAACTAGTGGATGAATACTAGTGAaccctgtttttttaaattccccATTGTTTAATTATCACCTTGCTACCACAATATTAGTAGAAAGGTGGAAGCAGAACTGAGCCAT-TACTCAGAAAACTT-----TGAGCCTCCAGTG--GCTTGGACTCTGAGTAAAG-TGGAACCCGTCAGAAGATTTATCCTTGCTGACTTCCCATTTGACTGTAGGGTGTCTTCCTATCCGTTTTGTAGCACCAGAAGCCCCGGCcagctccttttttttctctgtctttcctgtCATCTGTGAGTAGCAAGCTATGACCCACTGTGTGACTCAGGTATTCTGTTTAGGTGATAACTTAAAGCCAGTACTCACAGATCACTGGGGTGCTTTCTTGGGTGTAGCATGTGAAGcggtttgtctttttcttcttacaATACAGTTGTCTTGAGCTTTAAGAGTTTGAATAAAGGTCT-----TTAAGAGCAGAGTACGGCTAGGTGAGGTGGCCCTCttaggaggcaggaggat--gtcaaaAAGGAGCAGGATAGAG----------ATAGCATGTTGACAA--ATGAGTAGATC--TCCAGGAAAAGCTGATAATGTAAGGATTATCACATACTAGAAGCTAttgtttcaggg-gctggggattta------gctcagc----ggcataagcgcctgc------cttgca------------------------------------------agcaggcagtcgggagttcgatccccggtaccgataaaaaggaaaaagacaaaaaaaa----aaaaaaaaaaag------------aagcgcTGTTGTTTCTCAGTCTTTAGTTTTATTTGGGTCCTTTGTTTCCTTCAGGACACACAGGAGAAAGAAGGTATTCTTCCCGAGAGAGCTGAGGAGGCAAAGCTAAAGGCCAAATACCCAAGCCTAGGACAAAAGCCTGGAGGCTCCGATTTCCTCATGAAGAGACTCCAGAAAGGGGTATGAGTGGAACACAATCTTTTATCATCTTACATTGGAGCCAAATGAGACTCTAAGTCTGTTCAGGTTC--ATGTTTGGTTTTCTGGAGGTTTTATTATTGGGCACTAGtacagagaaatta-aaacttgaaaagagaaacataaatacatataaatccCTGATATGCTATCAGTTGCCTTCTGATAACACATATAGGAAAACCAGGTAAAATGTAAGGGTATTTGGGTGCATGGTAGGAAGTAGGGTGGGCATTAAAGATCAGAAATGTAGGGCACCC

a score=5117
s chr3            95626617 95 + 160039680 AACAGAACAGAGTGTAGATAGCATAATTACAAACAGGTAGACCTCTAAGAAAATTTGATAATACAAAGGTTATCAGATATTAGAAGTCATTGTTT
s HiC_scaffold_1 140810276 95 - 233722169 aAAGGAGCAGGATAGAGATAGCATGTTGACAAATGAGTAGATCTCCAGGAAAAGCTGATAATGTAAGGATTATCACATACTAGAAGCTAttgttt

a score=6397
s chr3            95626690 187 + 160039680 CAGATATTAGAAGTC--ATTGTTTTT--------------CAGCCATTAATTTCACTTGGCGTGTTTTCTTCAGGATACACAGGAGAAAGAAGGGATTCTCCCTGAGAAAGCTGAGGAGGCAAAGCTAAAGGCCAAATATCCAAGCCTAGGACAAAAGCCTGGAGGCTCCGACTTCCTCATGAAGAGACTCCAGAAAGGGGTA
s HiC_scaffold_1 188949150 196 - 233722169 CAGATATCAGaaggtgaattatttttaaaaacctaagttGTAAtaagtaatttctttaaaattgttt----caggAAAT---GGAAGATAAAGTGACCAGTCCGGAGAAAGCTGAAGAAGCAAAACTGAAAGCAAGGTATCCTCACCTTGGACAGAAGCCTGGAGGTTCTGATTTTCTAAGGAAACGATTGCAGAAAGGGGTA

a score=89910
s chr3            95627770 2863 + 160039680 GAATGGCCTTCCTTAGCAGTGGAGGGCTGCCTTCACAGCCATCTCCTTCGTGGTCAGGTTTCTCCCTACCATGAGCTGACAGCAGATTATAAG------GACA--AAGCTGCAGTGTAAAGATGAGATGGAGAGAGAAGCAGCCTCCTGTGGAGAATCCCAGGTGCTCAGTCTTAGTCACAGATGACAGTGTGATGTTGAATTGCAGCTCCTCTTG----AGGCGAGCCAGGCGTAGGCAGACAGTCTCA-CCATGGAACATGTGTGGGAGTGGTGGGAGTCTGGAAAGCTCACTGC-CTCACGAGCAAGCCCAGTGCCTAATCCTGCTCTG--AGAATA-TTTTCTAACTCTGATA--GTCGGTTTCTGGTTGGTCT-CTAGCTGCTGG--TAGACCCAGATTGATTCTTCTTGAGTCTTATTCATGCTT--TTCCCCAGCACCAAGGTATTGCTTTGGCACCTAG----------------CTGTTACGAATGAAGTAAGTGATTGTAATTGAACCTTCTAGTACTCAGTAAGGTACAAAAGATACAGGAGTTGTCACCTAGGTTCAGGGACACAGCTGCCCCTTATGCAACAAAGGTACATGTTTCTGCTAGTAATCTGCTTATATTCT-GACAAGGTCAGAGCATGCTGG------GAAATGAACTTACAAGTGAGTAATGT-GGACTG--TGTGCATGGGGAATACTTA-----GACAGCTGAG-GTAGGTGGGAGCTTATGCTGACGGTAGACAGTGAGTCTC--TGCTTTTGGAGAACACCAAGGTTGCACATTCATCTAAACCTCGCTCCT-GTCTCTTAGCAAAAGTACTTTGACTCAGGAGACTACAACATGGCCAAAGCCAAGATGAAGAACAAGCAGCTGCCAAGTGCAGGAGCAGACAAGAACCTGGTGACCGGTGACCACATCCCCACCCCACAGGACCTGCCCCAGAGAAAGTCCTCGCTCGTCACCAGCAAGCTTGCGGGGTAACCTGGGCCCCTCTCT--TCCCCTTCCTCACCCACTGGACTGTTATATATTGTAGGCAG----GGAATGGGCACCTAGTCAGA---GCTCAGCTTGCCATCCAGGGGAGAC--ATTCTGCTGGGGGCT---------------TAGGTTGAAGATGGGCTCTGAGTTCATTTCTTTGGGTAAATTGAAACTTGTACACCCTCATGATAGCCC-AGTAGAGACCCAAGAGTAGGAAAGACTAGGAGTGCAGAGTGCTGCAG---CTTTTCCTGTGGTGAGAATGTGGAAGATGCAAGTTCTCCTGTTGGAGGAGCAAGTCCTTAGACGGGCTA-------TCGTGGAGCAGTGTGACAGGTTCAGTGTCCCAAGGCTGAATTGACAT-GCTGAGAAAGGTAGAGTGAAGGAG--ATGCTCTCTGTGCTTCTAAGTGTGCTGTCCCTTAGGCCTCTG-TGCTCTGTGTTCCCATCGTGG-GTGTTTAGGGGACCTTCAAAAGAGAGGAGATTTCTGCTTGCTTAAAATTACAGGGCCCACCTAACCCCTCTGCTGTGTTCCTCCAACAG-CTGCCCTGCTTCTCAAGGAGTGTAAAGTTTAACAGACGTTAGCTACTTATGAAAAAGAAAATGGTATCT----TTTCTCTTCCAGCATGTTGCTTTTTGAaagtattatgggataatggaaaga-------gtttaggagttgaaatacttgggctgtagtttttgtcaagctcaacagcactgatgtgtgagcttggccaggtctg-tagcctctctgaattgatcctgttcctcgtctgtaaaCAGACGGAAACGCGTGTGT-AGGCTAACTCTGACTCTAAAGTCCTACACCTGCCATACCCTTCTGGT--CATCATAAAACCAAAATTGAGGCAGGCCCATGGCTGAACCTCAGCTCTGTA-------------GAGCCAGAAGTG-------------CTACATGGGACGAGAGAGAGTTTGAGATTTAAGGGCCATAGCTTCCAACAACAG--TCTCATAGGTATCATAGCCTT---TTTGAGAGAGAAA--------------------------------------------------------GAGA---------------------------ACA---AACCTGAAAAG--------------------------GCTGTCCCTGGATGTGTCT---------------------------------------------------------TGACTCTGCCCATTTTCCTGGGTCTGCTGTTGACCCTAGCTGCTACAAAGCTGCTCTGGCAGCAGACTGGATAGGCCTGAGGAGACAGGC----TCATTGACGTG----GCATCTTGCTTCAGATGT------ATGTTAGG-----CATGGAGGAAGAAGGGATGAAGGGAGCT---GGTCCCCAGA--GCTTAGAGCTACTGCCAGCTGGAGCAGCTGCTCCTTAGCAGATGATTCAC--TGGTGGAGGATGGAAA---GAGGGTGCAG------------------------------GGAGGGAGGCAGCAGCCTGTCTTGCTGT-------------------------------------------------------GTCATCACTAGTTTGGCCTGGATCTTACTAAA--TGCCACCTGCTCGTCATCGACAGAGAGGGCCAGAGTGAGAACTGCTCAAAAGAGCAAGATGGTGCAGTCTCTCTCCCCTTTCCAGATTGCA------------------CTGTGCCCTTAGGATGTCTGGCGAGTTTGTGGATGTGTGTGTTAGGGGAAGGACATGTAAATATGCCCTTCTCCTGATTGGCCACTGCCCAGGTCTCTGGCCATCATTCAGATTGGGTAGAAATAGATTGGTGAGGAAGGAATGGAGAGAGCAGGACCCCTGGTCTCCCTGGCCCCCAAACTCTTTGACTCTCATTTGTAA-TGTATATAA-TTTTGTGTTTTTTGCTCCATTTTCTCATGCTGTCATCCTTAATGAGAAGTCCATGT-----GGGAAGGGGACAAACTGAACATCACTGTATAGTTTCTTCAA-TGTCCCAACCATGTT-TACATAGATATGTCATGttattatatatataaatatatatataattttGTACGTTTTCTTCATCTCCGATCTTCTCGAATTCTGTAC-CTTTTTCTCCCCTGTCTGAGCTGCCTTATCTATTGGTTAGATTTGTGTCTCCAGAGCTGATATGTTCACAATGAGTCTGGTTTTTAGAAAAGGACAGGAGAAATAGGGAA
s HiC_scaffold_1 140811108 3181 - 233722169 GAGTGGTCTTC-TTACCTACGAAAATCTG--TTCGTAATCATCCTGCTCCTGATCAGGTTCCTCAGTCCCAAGA--------TAGACCTTAAACCAGCCGACATTAAGCTGGAATGTTCA--TGAAATGGA-AGCGAAACA--TTCCTGTAGAGAATCCCGGTTATTAAGTCTTGGTCACCGATAATACTGTAATGCTGATTTGCAGTTTACCTCGCCATACGCAAGACAGGCATGGGCAGGCTGGCACAGCCGTGGAACATGTGTGGGAGTGCTGGGAGTCGGGAAAACACAGTATTCTCATGAACAAGCCCAGTTCCTATTCTTGGTCTGCAAGAAtaattgtttaattttgagaTTGTTGGCTTGAGGTTGATCTTCTGATTGCTGGGATAGCTCTGGATTGACCCTTCTGATATCAGATTGATTTCTGTTCCTCCAGCACCAAGCTGTTGCTTTG-CACTTAGTAGTGTCCTCGATAAGCTTTtcagaataaagtaaataaatacagttGAACTGTTCTGTACTGAGTAAGGTACAGCAGATATAGGGGCTATCCTTTGA---------------------CTATG----AAATTTGTATGTTCTTTCTAGAAACCTGCTTATATACTTGAAAAAGTCAGAACATGTTGGAAGGaagacataaatttgtaaa--attaatattaaactaCATGTGCATAAAAAAGACTTACTTGAAAGATCTGAATGTGTTTGAGGGCTTATAATAAATATA-------AGTCTCGTTGCTT-------------GAGCTCCCTATTCACCTAAACCTCCCTCTTTGTCTCTTAGCAAAAGTACTTTGACTCAGGAGACTACAACATGGCTAAAGCCAAGATGAAGAATAAGCAGCTGCCAAGTGCAGGACCAGACAAGAACCTGGTGACTGGTGACCACATCCCCACCCCACAGGATCTGCCCCAGAGAAAATCCTCGCTCGTCACCAGCAAGCTTGCGGGGTAACCAGGGCCCTCCTCTGCTCCCCTTCCTCACCCACTGGACTTTGTTATGTCATAGGCAGGGATGGACTGGGTCCCTAGACAGGTCTTCTCAGTTTGCTAGCCAGGAAAGACTGATGCTGCTGGGGGCTGCTGAGGAGGTAATGCAGGTTGAAGAGGGGCTCTGAATTCATTTCTTTGGTTAAATTGATACTTCCATACCCTCATTGTAGCCCAAGTAGGGGCCTGGAAATAGGAAAGACTAGGATTTGATAATGCTGCAGACTCACTTTCTTTCTTGAGAAACTGGGAGATATGCTTTCTCTTTTTGGAAGAATATGCCCCAAAATTGGTTAGACTGAGCCTTAGGAATATGTGACA-GTTTAACATCCCAAGACAAAGCTGACGTAGTTGGGAAAAGTAGGCTGAATGAGACATGTTTTCTGTGCTTCTAAATGTTCTGTCCCTTAGTCTTCTATTGCTTCATGTTTCCATTATGGTAGGTTGAAAGAAcccccaaaaaggaaaactaatttGTTTGCCTAAAACTGTA-TTCCCACTTAGCCTCCTTATTTGATAGACCTTACAGTTTACCCTAGCTCTCAACTGATGTGAAA-----------------ATTGGTGAAAATG-----ggtaccttctctctctcttccagtaTGTTGC-TTTTGAATGTTTTGTGGAATAGTAGAAAAATGCACTGGCTTAGCACTCAAGATATCTGGTGTCTAGTTCCACTCAGTCTTGGTAGTACCCATGAAT-AATTTGGGCAAGTCAGTTAGCCTCTCTGgatt--tctgtttcctcatctttaaaaagaagttaa-gtaTATATAAGATTGATTCTGA-TCTAAAGTTCCATCCCTGCCAG-------TAGTAAAACTGTAAAACTAGAAGTGAAGAAAGCCTATGAGTGAGCCTCTCTTCTGAAATCCTGGGAAAGTACGCCAGAGGGGAATCACTTGAAGTCTGCATGGGGAAGGAGGACATTTGCGATTTGAGGGCTATAAATTCAGGCAACAGAACCTTATAGGTATCACCGTCttgaagttaagaaaaaaattttaagctaGCCATGGAACTAGGTATAGTGGCACACCTCAGTAGTGGAgtgggctgagacaggaggatcctgagttcaagtcccataCAGGCAActtaaaaagggatggggatgtagctcagtggtaaagcaccccCAGGTTAGAtctttagtacaaaaaaaaaaaaaaaaaaaaaaaaaagaagtcatgtAGGCTTCTTATCTCTGACCCCATCCACTTTTTTGGCCTCCGTATGAGCCTTAGCCACCAAAATACTGCTTAGGCAGCAGA--------GCTGAGGGAAACATGCTTGATCATGTCCGTGTAGTGACCCGAGCTTCCCAAGTAATCAGATGCCAGGAGGGTTAGGGAAAGAAAAGGGATAAACTGAGCTCCCTACCCCTAGAGGGCTTAGAGCTATTGCAGGAGTGGGCATCAGGTTCTTAGGAGACAGCCTACCTTGGAGgaagcagggaaactgaggaagctGCCTTCCTAGAGCTCGGTAACCCAGCTCCCATGAGATAGGTAGCA-------TTGCTGCTTCCCAAACAGCTGGGAGAGAAGGGTTGTTTGTGGGGACTGGCATCTGCAATCTAGTCATTGCTAGTTTGGCCTTAATCTTACGGAGTTTTCCAATTAGTTGT----GACAAAGAGGGCCAGGGTGAGAACTAGCTGAAAGAGCAAGATTCCATAATCT-TCTTGCCCTTTCAGCTCACAATTCTGATGGCCAGCCACTTCTGCACTGAGAATGACTGGCCGGCTCGTTGCTGTGGGTG---GGATGATGAGGTCTGTCTGTG----TCTCCAGACTG---------CAGCTTTTGGACTGTCCTTGAGATTGGATAGAAA-ATGTTGGTGAGGAAGGAACAGAGAGAGCAGGATCCCTGGACTCCTTCCCACTCAGACTCCTTGACTGTCACTTCTAATTGTatataatttttgtgtttcttgctTCATTCCCTCATGCTGTCATCCTTGATCTAAAGTCcatgtggggaggggaggggagatgctgaccATCACTGTACAGTTTCCTCAGCTGTCCCAACCATGTTGTACATAGATATGTCatgttattatatatataaatatatatataattttgtacgTTTTCTTCATCTCTGATCTGCTCAAATtctgtacattttttattttctgtctgagCTGCCT--TCTATTGGTCAG-TTTGAGTCCTCAAGACTG--ATGTTCACAGTGAGTCTGGTTTTCAGGAAGTAACAGAAACAATAGGGAA

a score=10228
s chr3            95628537 174 + 160039680 TAGCAAAAGTACTTTGACTCAGGAGACTACAACATGGCCAAAGCCAAGATGAAGAACAAGCAGCTGCCAAGTGCAGGAGCAGACAAGAACCTGGTGACCGGTGACCACATCCCCACCCCACAGGACCTGCCCCAGAGAAAGTCCTCGCTCGTCACCAGCAAGCTTGCGGGGTAA
s HiC_scaffold_1 188954311 174 - 233722169 tagcaaaaatattttgattctgGGGATTACAACATGGCTAAGGCAAAGATGAAGAACAAACAGCTGCCCACTGCGACCCCAGATAAGACCGAGGTCACTGGTGACCACATTCCCACTCCACAGGACCTTCCTCAGCGGAAGCCTTCCCTTGTCACGAGCAAGCTGGCTGGCTGA

a score=46622
s chr3            95631186 1346 + 160039680 TGTTTACCATGAGTATATT--GAAAAGGGAGAAAACGTTCTGATTATGGATAGGGAAAGACTAAAACTTTCTTT------TTATTTTCCCTCCTCCTTTTAC---TTAATATTCAGGCATATACAAGGTAGTTTAG-TGAAGTATTTGGAGAAACCATGGGGTCAA---GACTGGGATGGAATTTACGAGCTTTCCCCTtttacttgactggttttttttttgtttgtttgttttttgttt--------cttccttgttcgtCCACAGTGGCCAAGTTGAGTGATGCTTCCTGGGGCTCCACCAGATCGTGAGACGCTGCCCACTCGGGTCCTGTGCTGGCTCCTGCCCCTCCCTGCTTTTGTAGCCAGGGGTCAGGAGGTGGCCCGGGTGCAGGCTAGAGAGGCAG-AGAACCTGCCCACTGGTGTCCCAACACATGGAGCCCCTTGGGCTGAGCACCAAGACCTTGAACTTTTTTTTGTTTTGTTTTACCTTTTTTTCCAAATAACTGTTGGAAGAAAACTCATTGAGATCCCAAGGGTGGGGTTGAAAGGATGGAGT-GAAGATGTGGGGGAGT--GAGTGAGGGTTTATGACTGATAAAAAAGAAGTTTCCTACCGTTCTCCTGAACCTCTGGGTTGCTGTGGTTGAC-TGTAAGGTGAGGGA-----------TGGTAAGGGGTTCAGGTTCAGCTCTGAAGAGAGAAGCACTCTTTGAATATGGCTAGTGATCTAGTGTCAGAGAAAAGGAATTGTGTTCTTTAAAGCAGACGA--------GGTCTCTCTGGTTCTGCAGAACAAGTTGAGGATTTAGGATAAACTGTTCCTTTTAAAAAA--------------------------------------------------ATGCTGTCCTTGAAATAGGTTTGCTGTGTGGAGAAGGGCAGTGAATG-----------------------GGGAGCCCCACAGAGCCCTGGGGAATTTTTTTCAGTATTTAAAATAAAACAACAAAAAATACCCACGGAAAAAACCAAAACTAGACCTGTTGTGAAGCAGTTGGTGTGTTTTCTTGGGATTTGGGAGGTGAAGAGCGATACTGGAGGTGTGATTGAGGGAAGG--TTGGTGTGGGCCCCTGAGTTTGAAAGGGGCTCTGACAAGGCTCATTACATTGG----------------------------------GAGAGGGAGCAGGAATGGTGG-ACACAGATGACTGGTGGCCTTTGCTGGCTTCTGCCTGTCC-------TTTATAGCTAATTCAAAAGATATGTCACC------TTATAG-----AAAATGAGAGATTTGGGAACTTGGT--TAAATGGTGTGCTAACACCCAAAGCTTAGTCCAGACTCAGCAAGAATGGGGCCC-CTTTTCATTCTTTTTCCCTTCAGTTTCTATTCCTAAGTTCTGTTTGTGTGGGAGAAGTGTGAGTTATTAGTAATAAGCAAAA-GAAACTGGCCTTTCTGTCCCTGGCC
s HiC_scaffold_1 140814977 1467 - 233722169 TGTTTTCCATGAATATctccaaaaaaggcaaaaaac---ctCTCTGTGAATAGCAAAAGAatgagaatttctttctttttttattttttgctatttctttatGGATTAAGATTGAGGCAAAAGTCAGGTATCCTGGATTAAGTGT--AGAGGAACAATGGGCAGAGACTGACTGGGATGGATTTCAGGGTTTTTCCCCTATTACTTgacag--tgtttttttgtttgtttgttttttgtttttttttttcttctgtgttcatcCACAGCGGCCAACTTGAATGATGCTGCCCGGGGCTCTGCCAGATCCTGAGAAGCTGCCCCCT-GGGTCCTGTGCTGGCTCCTGCCTCTCCCTGCTTTTGCAACCAGGGGTCAGGAGGTGGCTTGGGTGCGGGCTGGAGAGGCAGAAGCCCCTCCCCGTTGGTGTTCCAGCGCATGGAGCCCCTTAGGCTGAGCACCAAGACCTTGAAccgt------ttttgttttatgtttttttccaaataactgttggaagaaaaatcagtgaaatcCCAGGGGTAGGGTTGAGAGGGTGGGGTGGGAGATTTGAGTGAATACGAATTAGGGGTTAGAGACGATAAAA---CCATCCCTGGCTATCCTCCTCAACCACATGGTTAGTGTGGGGTCCGTGGAAGGGGAGGAAGTGGAGTAGACTAATAAGAGGTTCTAATTC--------AGACAAAAGCCTTGTGTGGTTGTGGCTGGAGA-CTTGTGTCAGATAAAAACAACTGT-TGATCTACAGATGACAAATGCAAACAGCTCTTCTGATTCCTCAGAGCAAGCTGAGAACTC------AATtgtccacaaaaaaaaaaaaaaaatatatatatatatatatatatatatatacatatatatatatatattctgtccTTGAAGTAGATTTGTTACTGGGGAAAGGGCAGTGAGCGTGGGGGAAAGGAACCATGAGCATGGGAGCCCCACAGAGCCTAGGGA---CTTTTTCAGTATtcgaaataaaa-aacaaaaag-acccataaaaaaaacccaacccagaAACACTCTGAAGCAGTTGGTGTGTTTTATTGGGGCTTGGGAGGGGGAAGAAAATACTGAAGACACCATTTAAGGGAGAATCTGATATGGGGCCCTGAGTTTCTAAGAAACCCTG----GGGCCTTTAGAGTGGCATGTGGCTGGGCTCCCATTTCCACCACTTAAGAGATAGGAAACAGGCTCAGCAGCAGTCAGACCA-----GGCTTCTCCTTAGCCCT-CCTGTCCCTTTGTTTCTATAGCCAGTGCAGAAGATGCATCATCTTCAGGTTGTAGCTCACAAAATGAAAGATTAAAGATATGTGTTGTAAATGGCTTATTATCACCTAAAGCTTGGTCTAGGCCCAGCAAAAATGAagcccatttttcattttcctttccttca----------caAGGTCCTGTTTGTGAAGGAGAAATGTGACCTCACAGTGCTAAGCCAAATGAAACATGTCTTTCTGCTTGTGGCC

a score=8712
s chr3            95652708 203 + 160039680 CCCCCTTTTCCCCTCAGTGGGTGGCCTCGAAAGTGCCACCTGGGGTGAAAATGGGAAGCCGCAGCCTCTGCCCTTCCTCTTGCTCACGAAGGGGATCCCCCAATTGGATAAAAGTTTACATAATTGGTAAAAATATCACAAATTATTTGCAAAACTTAGCTTT--AC--------CTGTGAGT-AAGGTTGGGACCTTGAGCCCCTTCTAGGCT
s HiC_scaffold_1 140831165 204 - 233722169 CCCCTCTCTACCTTCAGTGG----CCCCGAAAGTGGCACCTGGG-TGAAAATGGGAAGCAAAAGCTTCCACCCTTCCTCTCTTGCACCAAGGGGATCCCCCAATTGCATAGGAATTTACatatttagtaaaaat-----aaaatgtatgcagGACTTAACTCTTAACCATGGCTGCTATGAGTGAAGATCAGGGCCTGAAGGCCTTGCTACGCT

a score=114512
s chr3            95659023 4486 + 160039680 [encoded data, 5284 characters]
s HiC_scaffold_1 140848314 4944 - 233722169 [encoded data, 5284 characters]

a score=13728
s chr3            95673844 700 + 160039680 TTTGCTCCCATCACTCCCCCCACCCCCATCTCAAGTCTCAAAGGTCCAGTTCCTCTAAGTTCTTCCCTAAATTCCCCCTAGTGCAGCAAG-CCAGGGGCTGCACCG---CATCCATCTGCCCTTTGGGTTTTAACTTCCTTACTCAGACCCTCCAAAGAGTTTCAGAGGTCAACAAAGCAGCGTCTGGCCACACCGC-TCCTTCTAGGGGTCCAGAGAAAGGGGTGCTTCAAGGCAGGCCCGCCTTCCTTCCCAGAACCGTCTGCTCTGACCCCACACTGCTTGCAGATGAACTGAGGA---------------CTGCAGGGACTTCT--CTTTACAGTGAGGAGTAGAGGGCAGACACCGCC---GCTCCCGCCCCCTCCCCCCCCACCCCCCAGGCTAGAGGCGA----GAAGCTCTGGG-GATCAGAAAAAGAAAGGAGGTGTTGGGGG-GAACCCTTGAGGGCTATGGCTGCA--TTCTCCACCTGTGATTGGCTCTCAAGCCCAGACCAAAATCTAAACCTGCCCAGCAACAACCCTAAGAGGCCTCAAAAGGGAGGGGAAGTCAGCTGAGCTGTGGCCTCCACCCCAGCCCTGTTTCCAGGAACTGATGGGCGGG-------CTGGGAGGGCAGCCACCCCTCCCTTGCTCGGGGACTCTGTGTTCACTGCCTGCATCTGGAAGCTGACTCCTGGGCCCCATTTCTCTGGTCCCTACATCTTTGCCTGTCCTTC
s HiC_scaffold_1 140864195 674 - 233722169 tttGTTCATATCAC-AACCCCAACCCCATCTCAACT-TGGGGAATCCAGTTCCTCTGAACCCTTCCCTATTTCCACCCCAATACACCAAAACTAGGGGATCCACCAACACAGCTCTCTGCCCTTTGG-TTGCAGCTTCCTCTCTCAGCCCTAT------GTTTCACAGGTCAATAGAT---------GCCACTCTGCATCCCTGGAGGGGCCAGGAAGAGGGGTTGCTTGGGGTCAGGTTCCCCTTCTTG---AGAACC--TCACACTGACCCTATACTGACCTCAG--GGACCAGGGAAGGTCCCCTTAGGGGCTGCACAGAACCCTAGCTCGTAagtgagaggaagaaagaaggcaaaGTTTTAGATGCGGGCCCA----CCTAGAAAGCAGAGGCTGGAGGCTGACCCGGAGCTTGGGGCtctcagaaagagaaaggggGCGCTGAGGCCTGGCCCCGCTGGTCTGCGGCTGCACATTCTCCACCTGTGATTGGCTCTAAGGCTCAGGCCGAGCTCCAAACCTGCCCAGCAACAGCCCGAAGAGGGCGGGTCAGGGCCGCGGGGTCAGCTGA------------------------CTTCCAGGAACCGCTGGCCCGGGTCTTGCCCCGCCCCACAGCCGCTCCCCCACCGC----GGTCGCC---TCCGCTGCCAGCCCCTg-----tgactctctgtctctgtctctct-gtctcgttctctctctctctctctc

a score=68666
s chr3            95675405 2635 + 160039680 GAGGCACAGACAGAACAAGGCTGCCTCCAGCG----------------GGGCATCGGCAGCAAGAAAGTCAGGCCTCAGAACCAACTGTAGGGGCCAGGGAAGA--GGACCCTGGAGAAGGCTGTCCACTC------CACCTTTAACAAGTTATTTACTTTGAAAGAAACACACAGGGAGAGGGAAGTGGTGGGGGAGGGAGGAGGCCTGGTGAGACATCTCTGTGGAATGTGTCTCTGGCAGGACATCTGGTCCTGCCTTGGCCCCTCCTCCCTCCTCCTGCAGTCACAGAGTC----ATGCGGGCCAAG-----CTCCTATGATTTT--GCTGAGCAAAG--AGAGGGGGCAAAGTTACCACCCCATGCACCCATGGAAAGCAGTAAGCAGGCATCTAGCAGGGAAGTGGGTAAAAGAGGAGGAGACAGGGCCAGAGCGAGAGAACCTGAAAAGCAACATGCATGCCCCACGCTCGTGCGCACACAAGCC---------AGCTTAGCCCTGCATTGAAA--AGTTCTGCTGGATTCCTAGAGACAACAGGAAGAGCCTACCCAAAAGCCCACCACAGGCT------CTCTGCTGGGATCCAAGCACCCATTACTGCTCCTAAACTGGGAAAAGTAGCGGCCTCTAGTGGCCAGTAAGCCATCTGCAGATCTGTAGTGGGACAGAATCTTAGGCCCTTGATCCAGACTGCCCCAGGTTTGAAGCTCACTCCACAGCCCATGAGGACCACATCTTCCTCCCATCCCTAAATGCCG----CTCCTCTTCCCACACCACATCTGGCCTCACATTGCTCGGATGGTGGGGTCCCC-ATGAACATAACGAAGAGCATGTTTAT-----GTCAAAACCAACTTTAATAAAAAATAAATTACTTCTGGGGTGGGCATCATTTTCAGTGTGAAGTGGCGACTGGGGCTAGGATGTCTTATGCTGACGTTTCTCTTTTTCACCCTCGACACAAGTGGTCCCTGCCCTGGAGAGGTGTGGTCCTTCCCCAGTAAGGTAGGGTAGCAGTGGCTGATCCCTGCCCCTGCTAATGAGGGAGGTAGGAATA------------------------CAGAGACTA--GATAA-------------------------------------GGCAGGGATGGGAA-------------------------------------------------------------CAACAGGGTAATTTAGAAGATGTG--------------GAGACGAGGATTGGGGCACAGACCTGGAACTTCTGGGGGACACACACTATGTAGCTCAGATTAGTGTGGAAATATAACCTTGCTCTCTCCC-----------------------------------------------------------------------------------------CCTTTCT--------------------------CCCCAGCCC---AGAAAAGCATGAGGGATACAGGCACCGCCCACTTCCTATTCTTTC------TCAAGCTGCTTTTGTGGAAGTGATAAAC--ATACACAGG-ACAGACCC--CCAGGC---------------------AGGT--------------------------CAGGTACACTTCTTGAGCTATCACA--CTGTAG----GTCTC------TCACCCTGGAGGATCCCTCTGGCAAGGCTGAGACCAGGTGAAAAGCCAGAGGGTACAGAGCGGGCTAGTCAGTGGG---------TGGCACAAGAAAACCACGAAGGCAGGGTCTCTGGGACCCGTTT-CAAGCCGGTTCCAGCTGGGACTGCTCCAGGACATGGGCACAAGAGCGGCAGCAGGTAGTTGTGTAGTAGGGGTAGACGCAGAGCCGGGCCTGTACCACCAGGGGGCAGTGTGGAGAGCTGTCCTTGCATTGGTCATCTGAGGACAGAGGTCAATGGCACAAGACTGGACTGACATCATCCCCTCTGGGAGCGTGGTACCCAATCCCACCAGC-TCTTCTCATATCTGCCCATAGTCC----AACTCC--ATCCCCTCTACTGGGGTGGGTGGGACG---CTCTTTACCTGGTCGCTGGTTGCAGGGTTGGCTGTTGCAGGGCCGCTTCCTGGAAGGTCTCAGGTGAGGAGGGCATCGGGAGCTGAGAGTCTGGTTGCCACTCAGGCACTGGACTTCCCTCGTCTGCATGCCTCCCTGGCAGGATCGAGAACACTGGGGA---GACCACAGCCATCTGATCAGATGTCTAACGTTCTCAGGGCTGCTCCCCA-GGCCACCCACTTCCTCTCTGAGAGACTGTGGTAGAACATT--CTCCAGGAACATTATAAGACCCCAAATGGAGAGGGTCCCCCAGTCCTGCAAGTCTTTGGGAAGTGGGACAACACAAAAGGTCGACTGGG-TTGTCCTGGG-CCGAGAGAGGCTTGGC-------TGAGTGCAGGCCTC--TTTGTTAGAGGCCCAAG--GAGAGCAAGGCACGGGTGCCAGGCACTCACCGGACTCCAGAGAGTGGAGAACCATTTGTCCTCACAGGCCTGCCCCTGACAGGGCTGCAGGGCAGGCGGCCTGGGTAGGTGGGAACAGTTGCTGGGAGAAGTCACATTGAACTCGGCCCCCAGCTTGGACACACAGATAATGTCTCTGTGTTGTGTGCCAGACCCACACTCCGAGGAACACTGTAAGGGAGGGGAAGAGAGATCACTCTTAAGTTTAAAATGTGGGGCTTCGCCAGGACTGGTTTCCCTTC---GGTCCCGCATCTCA---GGGCCCCCAGCTGACCTCACTCCAGGGGCCTGTGAACCAGCGCCATGTCCTCTCACAGGGCCCTAAACTGCAGGCACGCATATCGGGAGGGCGGCTTCTGAGAGGGCAGCCCTGCTCAGTGC---TTCCTGCTTCCGGGTCTCCCTG---AAGGGTCTCCCCACTCCTAAGGCAGACCACAGCGCGTCTCTGGATTCCTGTCCCGCACTCGGCTGAGCACTGTTGGGAGGGAGAGTGACCTATGTGTTGGGAGG
s HiC_scaffold_1 140865253 2865 - 233722169 GAGGTGGAGATGGGGC--GCCTGCTTCCGGCGCGTGGCCCCCTAACTGGAGCCTCGGC-TCCCGGGACCCAGACCTCGGGACTGCC---AGGTCACAGGGAGGACAGCGCCACGCAAAACGCTGTCCTCGCGCACAGCACCTCTGAGCAG------GCTCAGGAGGAGAAACagctggggaggg----------ggaggaggcagCCAAGGTGCGACAGCTCGGAAGAATGCGGCCTTGGCAGGACACCGAGTACCGCCT--GCCCGCCCTC-----------GGCCTCGGGTTCCCCGATCCGGGCCAGGTCCTCCCCCTCAAGTCCCAGGCCGAGCGAGGGAACAGCGGGCAGCGCGCTTTCCTTCTGCCCCGCTCGCGCGGAG-AGGCAGA-GCTTAACAGGAAAACGG-TAACAGCGGGTAAGATGG---CAGA-CAAGGGGACAGGGGAAACTAC-------CCCCA-------------AAAGGCCGCTGCCATTAGCTCAGTCTCGGATTAAAAGCAGTGCTGCTAGATTCCTAGATACCATGGAAAGA--TAGGCCAAGAAACACGCACAGGCCACACGCCTTTTCTGGAAAACAAGCTCCCAAAGCCA-TACTGAACGGGGAGAAGTGGTGACTCCTAGTGGCCGGTGGCCGACCTGCAGGGTCGCTCTGGCCGGGA------GGACCCTGCCCC-----GCCCGAGGAGCGG-------------------GAG------------CTCCGGGCTCTGGGTGCTGAGGTTGGCTCCTCCTGGGCTT--TCTGGCTTCACAATTGTCCGATGGCCGAAACTCGGATGGACA--ACGAAGTGCATGCTTCTCATTTGTCATAATCaactttaatgaaaaataaattagttctGGGGTGAGAGCCATTTA----GTTAAGCAGC------------------------TAACATTTCT--TTTCCACGCTTGGTTCAGATGGTACCTGTTCTGGCCTGAAGTTAT-----------------GACTGGCAACTGCTGATCCTCTCCCTAGCTAATTAGGGAGGCAGGGATAGAGATGGGCAAGGGATGAGGGGGTCAGAGACAAagggtaactttttttttttttttttttttttttttttttttttggccggtgctggggatcaaacccagggcttggTGCACGCCTGACCAGCAGCCTACCATTGAGTTACACTCCCAGCCCAAAAGAGTGGTTTAGAAAATGTGAGGGCTGAATATGAGAAATCAGGTTTAGGATGCAAAATTGGAATTGCTGAGAT-CACGTTCCAAGTAGCTCAGATTATTAAGGAGCTGCAAATTTGCTTTCCTCCTGGCCTACAAAAGTCTGgcgcgggggtggggggtggggagtgggggtggggttaaggcgggctggggatttagctcagcggcataagtgcctgccttggaagcacgcagtcatgagttcgatctccggttcGAAAAAAAAGTCTTGGGGAAACAAGTACTGTCTGCTCCCACTTCTTTCCATCCCTGTGACTTCTCTTTGGGAAGTGATATCCCAGTCTGCAGGCACACACCCACCCAGGCCTCACACAAATTTAGAGGCACAGGTGCACACACTTCACCCAAGCATAGACCCAGTCACACATCTTGA-CAACCACTGTCCGTAGCCTCGTCACCTATAGTCGCCCTGGAGGGTACCCCAGGAAAAACTGGGACAGGCTGGAGAGCCAG-GGCTACAGTGTGGGTTGATCGATGAGGACCAATGCTGGCATGACAGAGCCG-GGAGGAGAGGTCTCCTGGACACATTTTCAGGCTGGCTCCAACCTGGAGCGCTCCAGGACTTGTGCGCAAGCGCGGCAGCAGGTGGCTGTGTAGTAGGGGTAGACGCAGAGCCGGGCCTGTACCACCAGGGGGCAATGTGGAGAGCTGTCCCTGCAGCCATCATCTGGGGACAGAGACCAGGGA---------GGACCATCACTA-----------------------------ACAAGCATTTTCTTACCTCCGCCCACATTTCTGCTAACTCCTACTCCATTCCATGGGGGCTGGAGAGAAGGGGCTCTTTACCAGGGCGCTGGCTGCAGGGCTGGCTATTACACTGCCGTTTCCTGGAGGGTCGCAGGTGAGGAGGGCACTGGGTGCCGAGGGTGTGGTTGGCGCTCAGGCACTGGACCTCCCTTGTCTGCGTGCCGCCCTGGCAGGAGCGAGAACACTGGGGAAGGGAACGCCACTATCAGATCAGACCTTTACTGTATTCAGGACTGGGACCCATGGCCACAACCTCCCTCTCTGAAGAGTACTGATGGGACGTTATTTCCAGGGACGCTATGGAATCCTGGATAGACAGGGCCCGCTGGTCCTCCAAATCCAAAGAAAATGGGACAAAGTGAAACTTCAACTGGGCTTGTCCTGGGGTTTGGAGAAACTTGGGGGTTCAGTGAGAGGAGCCCCCACTTCACTGGAGGCTTAGACTGAGAGCAGGGCAGGAAAGCCAGGCACTCACCGGACCCCAGGGTGTAGAAAACCATCTGTCCCGGCAGGCCTGCCCCTGACAGGGCTGCAGGGTAGGGGGCCGGGGCAGGTGGGAACAGTTGCTGGGAGAAGTCACATTGAACTCAGTCCCCAGTTTGGATACACAGATGACATCTCTATACTGTGTGCCAGAGCCGCACTCTGAGGAACACTGTAGGGGA-AAGAACAGAGATCACTCCCAATCCTGCCATGCAATCCC---------CTGGTACCCCTGCCAGGGTCCCAGCCCTCGTCCAGGCCCTCAGCGCACCTCAGCCCAGGGCCCCGTGTACCAGCACCACGTCGTCTCACAGGGCCCCGAGCTGCAGGCGCGCATGTCAGGAGGGCGGCTTCCCGGTGGACAGTTTTCACCAGTCCCTGCTCCTGCATCCTGCCCGCCCAACCCACGGGGCTCCCCACTCCCGAGGCAGACCACTGAGCGCCGCTGGATTCCTGTCCCACACTGGGCCGAGCACTGTTGAGAAGCACAGC-ATCTGCATGAGGGGAGG

a score=109822
s chr3            95679441 2936 + 160039680 tgAATGTAAGTTTTTCCCACTTAACTCTGAATTCCTAGGCTAAGTCAAAAACAAAGTTTATC----------------AAGGCTGTGTTGAACAGGGTGTGACAACATGGCCTGGGGTACAGTCACCAGGGAAGGCAGATTTGCCAGAAGTATAGGACCCACCTTGGAACTCCAGTCACTGTAGAACCAGGCTGTGGTGCAGGGGCCCATGTCACAGGCCTCTCTGCTGGGGGGCGGCGGGGGCCCTGAAGCACACTCCTGCTTGTCCACCTCATCACCATTACTGCCAACACACCGAACTTGCCGGCTCCTCTGACCACGACCACAGCGCACAGAGCACTGAAGGA-TGAGAGA---CCCGAG-GCTGGGCGTCAGCCATCTTCCAGCCTTGC-----TTCTACAGAA-------CTAGGGTTTCACAGACTGG----GGGAGCTGAGCAAGGGCCTCCAGGCTGCCAATCCT--GTTGTGTCTGT---CTGATACTAGGTTCCATAGAG-----------GTCTTGTTTG--GAAAGTTTCTGATGACAAAGAAGAAAAGGTGGAAATTCTTTGGAGCCTACTTCTCAAGGGTCCTC-------------CTCACCTGGCTCCAGGGGGAGCTAATCTCCCAGTGGCCACAGAGGTGCAGCTGACAAGGCTGGGTGATGTTGGGCCGGGGGAGATGTCCACAGCGCTCTGGAGGTACCGAGGAGCCACCACCTCCGAATTCCTGTCTGCAGAGTAGCTGGCGGTGCTGGGTGCCAGGGCCACAGGATCGGCTGCAGGATGTCCACTCGCCAGCCTCCCAGCTG------TGGGTGAGGGAGAGGGAA------CGATGGGTGGAAATG------TGGGGGGGGGGGTGACAGACTGGGA----CCCG-AATAGGAGAGGAGTCATTTCACACTTGGCATCTGCATTTCTAGCCTGGAAGGAGGCTGCCAGGGTTTCCTTACTGTCTACGGGGTGTGAACC--TTTCTAATCTAATCTTCCTGCATCCAGGTGCTGT----------------AAGAACCCGAGGGCAGGGAGCAAGGACAGGG----------------------CCAGCCCTCCCTGTGGGCCGTACTCACTATGGAGGACACGGGGGTCCATGGCAGGGTTCAGGGGAAGCTGGGGGTCTGGCCCCCACAGCACAGCTCTGTTCATCCAACTCCTCTCCTGACTCACGGGAAATGCAGAGGAAAATGGGGTGCCAAACACCTGAAGGGAATAAGAGGGCAGCCAGGGGAGGCAGGAAGGCTCAGAGCCCCGTTTCAATGAAATCCCAGACATAGGGTCCAATGTAGACCCGTGGTCCAGGATACAGAATCTGTATAGATATATATAGAGAACAGGGATTTGGGCTG---------------AGGTGTCCTCCTTCACCTTTGCCACAGGATGCTGAACACTCAGAGTGCCCCACTTGTTTCCAGTATCCAGCAGAAGACCCCATGGCTGTCCTGACACGAGTCGGAGGAGGCACTTGGGGAATCCGCACCTGACGTTGGAGGGTGCCTGGTGCCCGGACTGGGCGGGGGGCTGAGGGGAGTAGGGGCTCCCCCCTCAGCATCTCTGCAGGGAAATCCAGGGACCAGATTAGATGCCTCCCTGCTACCCTGGAGCTCAGTCCCTGCCTCACCCTCCTCTCCTGGGTCTGGGGATCCTAGTTTTACCAGGCTGAGGCTGAAGGGCTGGAGGCTTTGTGGAAGGACTCTCTAGGACTGCAGGAGGGGAAGAGATGACATACTGATAAAAAACACCTGGGTTGTCCTCTTGAAAGATCATCTGAGGAGGGAA--GATCACAATGGCTTGGAGTAACAAGAGGGGCATACGCTAGGCTAGATCCACACTGCTCTGCCCTAAGGGCCCTCCCTCCCTCCCT---------AACGATCTAGCACCTGCCCCAG-CTCACATAGACGTCCACAGGCTGAGTGGTAGGGCCTTCTGCTGACAGACTCTCCCCCTTGCCTTCTTCCCGTGGAGGACGGTTATACTGGAAGACAGTCCCAATGGCTGTATAGGACCCTGGAGGATCCACAGCCCAGTTCCCATTGATAATGGAGCGGCCCCCAGGCCCTCGGAGTGCTGAAAGACAGATGTCTGAGCTGAGTGATAGTGGTACTCTCTTC-----------------------------------------------TGAAGCCTTTGTGCCC------------------------------AGAGACCTCGACCATCCACCCTCCTCACCCTCCATCCGGTTTATGAGAAGGCTCCAGC--CTCTTCCTGTTTTGCCTTTCGTTCGGCTGAAGAGGGTGTGTAGTAGGCAGATCA---------------AAGAAA---------AAGGATAGACTGGGGCATAGGACCGAGG--TCCTCTTTCTTACCGAGGTAATTGGAACTGGGTCGCAACTGGGAAATGTGAAGGTGGGAGGCCCCGGCAGGGATCCACAGGATCTTCTGATAGCCCAAGGGGCCCCCTCGGTCAGTGAGATTTCCCGAAACCAGGCGGCAGGTAGAACCATCACCCCCGCAGACTCCGCAGCCATCCGGACGCCTGCCAGAGCCAAGGACCCCATCACAGCCAGGGCTCTGGGGAGAGTGAGGTGAGGCAGGGGCCACACAGACGCCAGGCATCCCTCACACCTGGCCCCGCTCCACCCAGGGCCCTCAGCTCACCCCTGCCTGCCACACTCTTTGTGCTTCAAGT-CAGAGTATTCTCTGACCTCCTTCCTCCCCACTATGTCTGGAGGAGCTTTAGCCAAGTCTG---------GTGGGATCCTGTCTACA----------------ACCCATCCTTACTGGACAGCAGAAACTTTCCCTTTGGCCACCTCAGTCTGGTGTTTTCACTCTTGTGGCAATTAAAGGAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAGGTGCACATGTACAAACCAACACCCTGCCCTCCCTCACCAGGCAGCGTCCAGCCACACAGATGTCTAGGGATCCAGGCTGACACAGGGTTCCATCCTGCACCTTTTCAGTGTGTCGGACATAGAATCGGAAGCCACGGGGGCGGCAGTTCAGTTCACAGCGCTGGGAGCCCTGAACTAAAGGAGGAGACACAGGCTAGTTAACTGG
s HiC_scaffold_1 140868227 3111 - 233722169 TGGGTGTAAGTTCTTCTCATGTG--TCTGAGCTCCCAG--TAA--CAAACACACAGCAGATCCTCGCTCAGTCTTTACAGAGCTGTGCTGGATAGACTGTGGCAGGGCAGTGTGGG------TGTGCAGGGGTGTGAGGCTGGGCTTAGGTAGGGGGCCCACCTTGGAGCTCCAGTCACTGTGGAACCAGGCCATAGTACAGGGCCCCATGTCACAGGCCTCTCTGCTGGGAGGCCGGGGAGCGCCTGAGGCACAGTCCTGCTCGCTCACTTCGGCACCGTTGTTTCCCACACAGCGAACCTGCCGGCTCCTCTGGCCTCGCCCACACCGCACGGAGCACTGAGGGAGTGAGAGGAACCCAGAGAGCTGGGTTTCAGGCAGTGCTCAGTTCTACAGCTTTTCCCCAGGAACTGTCTCTGAGCCCTAGCTCAGTGGTCACAGAAGCTGGGCCAGAACC-CCAAGCCCCTAGTCTCTGGTTTAGTCTCTTCTCTGACATC--GTTCCCTGGAGCGCCACACAAGACCCTGTTTGCAGAACATTTGTGCTCCTGAAGAAACAGCACTGTCACTGCT--GGTGCCCACTCTTGGGGAGCTCCCTTGCCCAAGTCTGCTCACCTGACTCCAGGGGGAGCGCACCTCCCAGTGACCACAGAGGCGCAGCTGACAGTGCTGGGTAGTGCTGGGCCGAGTGAGGTGTCCACAGCGCTCCGGAGGCACTGAGGAGCCACCCCCCGCAAACTCCTGCCGGCAGTGCAGCTGGCGGTGCTGGGTGCCAGGGCCACAGGAGCGACTGCAGGATGTCCACTCGCCAGTCTCCCAGCTGCAGGCATGGGCAAGGAGTAAGGAGGCAATGAGATGCGTAGGGCTGCCATGATGGGGGAGAGGGAGATGCATTGGGGTGGGCCTGTCATAGGAAAGTGGGTA-----CATTTAGCA-CTGGAGTTGGAGTTTCCTATGGGGGTGCCTGGGTTTTTCTACTTTCTATGGGATGTCAGTCCTTTTCTAGTATTGTCTCCCTGCAGCCAGGAGGTGCCAAGTTGAGCCTATGGAAGATCGTGTGGGCAGGAAGCACGTCCAGGGGTGACTGTTGGGTCACTAGTATCCTAGCTGCCTTGTGGGCCATACTCACTATGGAGGGCATGGTGGGCTGTGGCAGGGCTCAGGGGAGGCTGAGGGCCTGGTATGCATGGCACAGTTGTGTTCATTCAGTTCCTCTCCTGATTCACGAGAAATGCAGAGGAAAATGGGTCTCCAGACACCTGAAGAGGACAAGAAAGCAGTCAGGG-AGATGGGGTGGCCCAGAGCCC-ATTTCCACGGAGCCCCAGATACAGGGT---------GCCCATAAACCAGGGTGCAGAATCT----AGTCACAGTGCCAAACCAGGGATTTAGACTACAGTCCCAGGAATACAGGAATGAAGTATCACCTTTTCCACAGGAAGCTGAACACTCAGAGTATCCTACTCGCTTCCAGTATCCAGCTGGAGACCCCAGGGGCATCCTGGGGTGGGTCGGGGTAGGCATCTGAGGAATCCGTACCTGACGCTGGAGGGTACCTGGGGTCCGGGCTGAGCGGGGCACTGAAGGGCGTGGGGACTCCCTCCTCAGCATCTCTGCTCAGGAATTGAGTAGACAGATCAGATGCCTCCCTGCGGCCTCCAAGTCC--CCCCAGCCTC--------TTCCTGGATC----------AGTCTTACCAGGCTGAAGCTGGGGCACAGAGACCTCTGGAGTGGGGATCTGGAGATCTGGAGGAGGTGACGAGATGATATACTGATAAGAAACACCTGGGTTGTCCTCCTGAAAGATCATCTGGGGAGAAAAACGGTAATAGATGTTTGGGGGGACTAGGGAG---CACGCCAG--------CAACCTTCTCTTCCACCTGAACCCCACAGCTTTGCGTGTAGGAGGAAAAGCCTCTCCGCATGCCCCAGGCTCACATAGACATCCACAGGCTGCGTTGTGGGTCCCGCAGCTGACAGACTctctcctctgccctcctcccgAGGAGGACGGTTATACAGGAAGACAGTCCCACTTCCTGTGTAGGACCCGGGGGGATCCACAGCCCATTTGCCATTGATGATGGAATGGCCTCCAGGGCCTCGAAGTGCTGGAAGA--GATCCCAAAACCTGAGGTTGGTTGCACTGTCTTCCTCCTCACCGTTCCCCACAGAACCTAAGACATCCCAAGGTGTCCCTGTGAGGCCTATCTGCCATGCTAAGTAGTGGTGAAGAGAACAGAACCAAGAGGCTAGAACCAAGAACCAGAACCAAGAGGGAAACGGAATGGGACCAGGCCCCAGGAGtcctggtttcttttcttttctttttttttaaatcggtaccggggatcgaactcacgaccacacacttgcaaggcatgtgcttatgacgctgagctaaatcctcagccccaggagtCCAGTTTCTTACCAAGATAGTTGGAACTGGGCCGAAGCTGGGCAATCTGGAGACGGGAGGCTCCAGGCGGAATCTGCAGGATCTTCTGGTAGCCCAGAGGGCCGCCCTGGTCAGTGAGGTTTCCCGAAATGAAGCGACATGTAGAATTGTCACCCCCACAAACTCCACAGTCATCTGGACGCCTGCCAGAGCCAAGGATCCCGTCACAGCCAGGGCTCTGGGGAGAGTGAGATGAGACCGGGGCCACACGAATGCCAGAGATC---CACA----GCCCTTGCccactcaggacctt----gcatttgtg---GCCTTGCTCCTTGTGCTACAAGTGCAGTGTGCT------TCTCCATAGGCCCCACCATCCCTTGAG----CCCAGGGAAGCATGCATGTGCCTGCTGGACCCTTCCTACAGGTCACTCATTGCTCTGCCCAGCTGGGCTCGACTGACAAGGCTTTCCC-TTGGCGATAT--ATCTGGTGGTG--GTTGTTGTGATAAGTAA---AACTcaccactctgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgcgcacacacaca---------tctGCCCT--CTCACCAGGCAGCGTCCAGCTACGCAGATGTCTAGAGCTCCAGGCTGACACAGAGTTCCATCCTGGACCTTTTCAGTGTGGCGGACGTAGAAGCGGAAGCCACGAGGACGACAGTTCAGCTCACAGCGCTGGGAGCCCTGAACTAGGAGACAACGTAGAAAATGGTGAGCTGG

a score=55854
s chr3            95682910 2220 + 160039680 tacccactgagccaAGCCTACCATTCCTCAAAAGGGTTTCTGACACGTGTGAT--CATGAGTTCATAGCTCATGAAGGTTTGTCTTGGTGTGGAGTTGACATAGCCACAAGTCCCAGTGGACAGTAACTTGGGAGCAACAG------------------------------------TGTCCTGCTGGAA------------------CAGGTTACAGTCACGCCCCCTGTCGGA------------AAGAGCCTCTCTAGACAGCTCCCTCTCCCAGCCTGCCTCCAGTCTTGACCATCCACCCATC------------ACTTCCCAAAA--TCCCTCCCTTCCTTAGATCTGGGCTA---------AGTGTCT----------GGTGTGACCTGAAAAGTAAGACAACAGAAGGGAGAGAGGGGCCACCCAAACCTGAGTCGGTCCTTCgggggtgggggtgggggtgggggtggg------------------------------ggGCAGGCTAGAAACCGCACCTTCGGTGAAGGGCTCCCACTGGTACAGCTGGCCCATGAATTCCTGGGAGTCAAAGGCGGCACACTGTAGGGCCCTGGGGTCTGGCTGCTCAGGGGGGCAAGGCTGAGAAGACAGATACACAGGAGTCAGAGCTGCAGGAGAAATCTGGGATGTGGGCCACAGCCAGTCTAGGGTTTGGGAACCGGTCGGTCAGCTCCACAGAAGAACATCAAGGCTCCCGCCCTGAAGTCAGAACCTCCATCCTCCAGTCCTAGTCTGGCAAGATGAGGACCCAGGT-------CAGGGAAC--AGTGAAAGCCTAGGCCACAAAACCGGGAG-------AAGAACTCACCTCCTGGCTGCAGGCTCGCATCTGTTCACTTTCCCCAGAACAGTTTGGAGCAGGGATACTGGGAGCAAAGATGCTCCAGAGTGGGCTGGAGT---------CTCTTGTCAGGGGCAGCCAGCCATCTGGG-----------GACCTGTGAGGA----CCTGGAGGTCTCC------------AGTGCCTCCTGCTCTGCTGGCTCCG------------------------GGGGACAGGAGAGAAAGGAGGTGGGTGTCGTCGCTCTGCTCCCTGGGGACTGCTCCAACTTCCCGGGGAAGGTGGCATTCGTGGCCCAAGGGATCCCTGGAAAGACCTACTGTCTCCAAAAGAGGAGGTAGGTGCAGGGGTCCCTGTG------------------------TAGGA------AGGAGCAGAACTAGTTCTGGGGAGCACTTCTGTCTGAGCAGTTCCAGACCTTGGAGTTTCAGCTGAGTGAGAACGGGGTTCAGG-------------------GGGCTGCATGTGAGGGCCGTGCTTTTCAGAGGCCAGCTCTGTGCTTGGAGGCTGAGATGGAACCATCCCTTCCCCTGTAGAAGAGTTCTTGGGTTGCCCGGGTC---------TGTGAGGATGCCTGCGGCTCCGGTGCAGAGGCAAGGCAAAAGGCACTCTCCCATAACCGAACATCCCTGGCTTGATGGGGTCTCGAACCCGGAACCTAGGA----GGATGTGTAGACTTAGTCATCTCTTAGCCTGTCTCCGTAGTCTGCTTCCTGAAAGATTGGCCTGCTGAAGCGCCTTTCCAT--TACCCCCTGTTCTGCTCT--------GCCCT----------CAGAGCCTCACCTCTGGGCCCCTTGAGGCTCCTGGGTTTCCTCTCTCCCCACTTGAGAAGCAGGAGCTCGAAGAGGGCCACCCCTTCCCCGAGGCTGTGGCCTATACAGAGACTGGGGATCCCGTGGAGTCTGGGGTCTGGAGCCCTGGCCCCGGGGCCGGTGGGCTTCTGGATGTCTTGGGGGTCGGGGAGGGAGGGGTAGGGCTGGGTGCAGTTCACATGTTCGGCTCCTGCGCTGCACCCCCACCCCACAGGGCTGGGAGCAGGAAGCCCATCGACCCCAAGGTCCCCAGAGGCCTTCAGGGACCTGGCCCTCCTCTGATGGCAGCTGATGAGAAGGTCCAAACAG---CTACAGAGGGGAGAAGGT----CAGAATTAGTGTCTCAA-----GGTTCAAGGGTTATTCGTTGTCCAAG-----------GTCACATTTACAGGTAG----GGCC--AAACTCCA-------GCCTTTTCTAGGTTATTAGACTAAGAG--AGGGAGTCAGTCTGGGTGGGCCAAACC--TGATACAAGGGGCCGAAGTCTCCCAGTGGGAATGTGAAGCCACCCTACAGGGGAGGCCAGGGCACAGTGGAGGGACCCTGGGCAGGGTAGCAGTGGCTCACTTGTCCCGGGCTCACCTCCTGATCCTGGCAGGGCTGAGGGAGAGGCAGGAGCAGCATCATACACAGCCAGAGCCTGCACACCGAGGGGTGGGGGACATCAGAGGGAGCCAGAGGTGTTACGACATTGCCTGCCCCCA------------CCCAGCTTCTCAGGAAGCAGACGTCCCTTGTCACTTGCCAGACCCCTTCC
s HiC_scaffold_1 140874538 2383 - 233722169 TATCCATTGTGCCCAGACAGC--------AAGAGAGCTTTTGACATCTACAGTTACGTGGATACAGAGTTTGCAAGGGTTTGTTTTAGTGTCAAGGTGACATAAGTCTAAATCA-AGTGGACATTTACTTGAGAACAACTGATCGGATACTGTACCACCCTGATTCATGGCATAACCTACCCTTCTGTAAGCACTGGACAAGATCTCTCACGTCGCAAACACACCACTTCCCAGAGGAAGGCAGCCAAAGGGTGCTTCTGGACCCCTCTCTCTCAAGGCCTGACCCCTCTGCTG-CCATCTATAGGTCTGACAGCTGAAGCCTGTCCAGAAGTTCCTCCCCTTCC--AGCCCTAAGTTACTTTGACCTAGTGACTTGGTAAAACAGGTGTGACCCAGAGAAAGAAGGGCCTACGTGGTGAGAAGGGTCG---GAAACCCTGTCAATCT-----GAGAGGGAGCAGGTGTGTCCTTGTGTCcctcatccccagccccaggcccccaTATGTGTGGGC--AAACACTCACCGTCTGTGAAGGGCTCCCAGTGGTACAGCTGGCCCATGAACTCTTGGGAGTTGAAGGCTGCACACTGCAGGGCCCGGGGATCCGGCTGCTCTGGGGGGCAGGACTAAAGTGGGGGAAACAAAGCAGTCAGAGCTGGGAAGGAAGCCAGGAGTA------------------------------------------------------------------------GAAATCAGG-------CCCCGGGGTCCAGATCAGATACGCTGAGGACCCAAATTTAGCCTCAGGGAGCCGAGTGGAAGTTTG---CACTGGAGGAGGATGCTCAGCAAAAACTTACCCCCTGGATGCAGGCTCGAAGCTGCTCGCTCTCCCCGGGACATCTTGGAACAGGGTCACTGGGAGTAAAGAGGCTCCAGAGGGAGCTGGGGTGGGGCCCAGCCCTCAGCAGAGGCAGCCACCCAGCTGGGTGGTGAATGGCAGACTGTGAGGGAGATCCAGGAGGACTCCCCCTTGGCCGCCAGTGCCCCTGGCTCTGCTGGCTCTGCTGGCCCTGCCGGCTTCGGCCCCAAGGGACATAAGGTGAAGGATCCGGCTGTCTGC---CTGTTGCCTGGGGACTGGCCAGACGTT---GAGAGTTAGGCATTCTGGGCTGAGGGGACACTAGGACGGAGCTGCTTCCTCTGGAAGAAGAAGGATGTGAGGGGGGCCCTGTGCCACCAGAGGCCAGGGCTCCAGGGTAGGGCTGTGTGGGGTCAGGGCTGATTCTGGGGGGCACCCCTGTTTCAGTAGTTTTGGGCCTCGAAGGTTCTGCTGGG-GAGGATGGGGTGGGGGCAGCTGATCCTGGAGATAGGAGCTGAGTTTGGGAGTTGTGCTTTGCAGAGG--------AAGCAAGGGGCCTG----------------TCAGCTGTAGCAGAGGCCCGGGAGGGCTCAGGTCCAGACGAGATCCTGGGCTGCCTGCGGCTCCGGTGCAGCGGCAAGGCGAAGGGCACCCTCCCATAACCAAACATGCCGGGCTTGATGGGCTCTCGGACCCCAGACCTGAGGTGTTGGAGATATGAATGAGGTCATAGCTCTGCCCCttctc-----ctggtacc--aaaaatcaaCCCCTGACACCACCATGCCCTCGTATCCTCTGTTCTCCTTTCTCCCACAGCCCTGTCCCTTCCCCTGAACCTCACCTCCGGGCC---------TCCTGGGGCTCCACTCTCCCCACTTGGGAAGCAGGACCTCGAAGTGGGCTGCCCCTTCCCTGAGCCTGTGGCCTGAGGAGAGGCCAGGTTTCTCCAGTTGTCTGAGGTCTGCGGCCCTGACCCTGGGGCATCAGGGCTTCTGGGTGTCGTGGGGGCCTGGGAGGCAGGGCCAGGCCTGGGGGGAATTGACACATCCGGCTTCTGCGCTGCACCCCTACTCCACAGGGCTGGGAGCAAGTGGTCCACTGGTCCCAAGGTCCCCAGACCCCCTCAGGCACCCGGGCCTCCTCCAGGGATGTCTGAAGAGTATGTCCAGACAAGACCTACACAGAAAGAAAGGTCAGACAGAAACAGGGATTGAGGGGATGGTGCAGGGCAGCCAAGTAGCCCAGGACTCTGGCCGAGTCATGCTCAGGAGCAGCAGAGACTTAGAACTCTAGAACTTGGCATTTTTCACGTGATTTCCCCAGGAGTTAGGGGGCCGGCAGAGAAGGGCAGAGCCTGTGGGACAAGGAGAC-------------TGGACTGGAGAGCTGAC-----GGAGGGGTCAGGAAGC--TGAAGGGATCAAGGCAGGGGCAGCAGTGGTTCCCTTGCCCAAAGCTCACCTCCTGGTCCAGGCagagcagagggagagacagaagcagCATCAGACACAGCCAAGGCCTGCGAGTCAAAGGAGGGAGG----CAGACCATGCTGGAGGTGATGTGACC---CCCACCCACAAGTTCCCCACATCCTGGTTTCTCAGCAGGCAGCAGGGCCTTGTCCCCTGCCCAGTCCCTCCC

a score=33420
s chr3            95686275 4272 + 160039680 [encoded data, 5073 characters]
s HiC_scaffold_1 140878398 4402 - 233722169 [encoded data, 5073 characters]

a score=166120
s chr3            95733841  9354 + 160039680 [encoded data, 11222 characters]
s HiC_scaffold_1 140905360 10217 - 233722169 [encoded data, 11222 characters]

a score=58050
s chr3            95745760 3428 + 160039680 ACTCTAAGTGTGG-CTCCAGCTTGCCTTAGGCCCATAGAAAGCCCCATCTCCAGGGTTGAGGTCCCAAGGTTCTCCAAACTTCTCCAAGGCTTGCTGTAGAACCTTCG-AGGGAACAAGATGAGAGGAACATGTCA---GGAAACTAATGAGCAGGGTAACCTGCC---GGCCTGTGAAAACTGACAC--CTGCAGCTTATGCTTTCTGAAGACCTTGCCACAT--ACCCCTGCTCTGCCCTAGGGATGGGCT-TATCTGCCTCGCTTCCCTCTCTCTTACTCACCTGCTCAGCCTGGTCCCATAGGCGAGGCTCCCCTAGGAAACCAGGTGGCCGGGTAGATAAAGCCAGGTGGAAGGAAAAACCAAGAACCGAGTAAACACACCGGAGAAAATCAAGGCAGCCCTGGATCTCTGCTTCCAGCTGGAGACAGGAAGT--TGGGATGTTAGCTGTATGTCAACTAGAAATCAGAAGGGATGGGTGGTTTTGGGGGGGAAGCGGGGGAAAACTAGAGGGGTAGCTATACTGCAGTATAAAGAAGGCAACTAGGGCCTGTGGATAAATCtggctagcacgcatgaagttctgtttgatttctagcattgtataca--------ccaggaatggtacacaccagaaatctcattgctcaggaggtgaagcagaaggaccataaatttaaggtcatcctccattactaagtacatttgaggccagcctggactacaagagaccccgtctttaaaaaaaaaaGGCAAAGAAAGTTGGCCTTATAATGAACAGGGAAAACCACCTGATGGGGTGCACAAAAGATGTGCGCATCATCCTGCTGGAAGCGCCACAGCCGCGTTAATCCTCCCAGACTGCCAGAGGCCTCAGCCCGATGCAGGGCTCCGAAATCAGCCAGTCGCACAGGCAGTTCCCTCCAGGATCTGGGCCGGTGGGCAAACATCAGGCTGAGGTTGGGATGAAAACAGATTCAGGGCCATAGGGAAAATGAACCCTggctttagtatgcagccttggctgacctagaacttgctgtgttctaggctggtctcaagctcatcatctttctgcctttgcctcctcagttctgagattacagctgtgtgccaccatgcctaacACTGAGTATCCACTTTCTCTGCAATCCTAGCTGTCCCCCTCCCCCTCTcagcatgctctcctcagagtctgaggccagcctggtctatgtagtgagtctgggaccaaacagggctacatagtgagactctgtctagaaaaaaAGAGTTAAACCCTTAGTCACACCATAGTA-----GGCATTTACTGT----CCATACTC--TGATGGGTACAGAGCCTTGACATTACCTAAGAACACAATTTCCCAAAATTCACTTGGTTAAACTTGAATCTACTGGATGTAGATTCAAGGCCCAAATTAGATGCCTCAATATTCTTTCCAAGGTTTGTTCTCTTCCTTCTTTCCTTCCTTCCTttctggttttttgagaaagggtttctctttgtagccttaactatcctagaactagctttgtagaccaggct--ggcttcacactcagaaatctgcttgcctctgcctagaatcc--tgg---gaataaaggtgtgcgccacctcgcccagctCCAAAGT--------ACTTTCTATTACTTTACATTTGGTGACCGTATCCCAG-CCCAGGAGGA-GCAGGCCTCCTGACCCCCAACTCACCAGTGTGCAGGGCAGTTCATGGGCTTTAGAGCAAGTGTGTCTTTGGGACACCTGGCAGGATGGCCACTCTGGGAGTTGTCAACACCATCAGTGCCAGGGGGCTTCAGGGAAAACATGTCTGCCCTATAGTGTTCCCAGTGCCCTGACTGTTCCCAGAGTTTTGTAGAAAACAGCGTGGGAGTTTTCACCTCTGAGAAACCACGGCGGGCATACTCAGCCTGCAAAGGTGGATACAGACATCAAATGTCAAATGTAACTGGAAGGAGAA-----GGGATAAAAGCTTTGTGATCCTCTTGTGGGTTCAGACCATGCTGACCAAAGCCAAAAGCTTTTAAATACCATGCTGACCAACTCCCTAGGCTGCTTCCAA-GTACACAGCAGGAGCACCTGGTT--AAGTCACCCGGCCTCTACAAGACTCTGCTCTCACTCCCTACTCCttctccctttgagacaagatcctactatgtggcccaggctgtcctcaaactcatgacacttctcttttagtctcttggtgctaggactctaggcacatgcctgcgtgcTTGAGCCGAACTCAAACACCTTGGCTCCATCCCTTCCCCCTAGACTCGTGTCCTCCTTACCCTGATGAAAGCCACCAGGGCATTATAGACTCTTGTCCCTCGTGGCAAGAAAAAACAGCTCCCAGGGCTCAGTTCATGGAAGAAGAAGAGCTCCTGTTCCTGGGGAAAGAATGTGACCTGTCACTC--AAGTGGGGGAGGG---CTTTGGAACTAGAGAAGCAAGTGACAGAGCTACTCCCTCTGAGCGAATCTTGTGGCAGATTACAATCACACTCTTTCaccaggtgtggttgtttgaacctttaatctcagtacttgggagggagtggagaaaggtcaagggtttgggtctttattagctatagcaggaagccaaccaagtctacatgagatctgtctaaaaaaaatgaaaACTGAAACAAAGTCAAGATAAAAAGCCAACAGAAGACCAGCTCATATTCCCTTGCCCTCACCCTCTGCCACCCTGCCACTCTTCTGTGCTCTGTACCTTCCCAATGCGTCTGTGGTCTCTTAACTCTGCTGCTTCTCTTCGAGCTTCCCAGTTCCTCAGTAACTCTACTTTGGGGAAAGAAATTCCTGATACCCTCTGCAGTGTCTCAGGTGCTCCCAAGGACCTCCACAAGGCTGAGGAGTTCTGT--GAGGGCGGAGGGAGTCAAGGGAAGATGAGGCAGATCAGAGACACTGGCTCTCCTGTCAAGTCTC---TGATGCTCAGTTCCGAGGAGATGAA--------CTTGAAGATCAGTTCATCTCA--TTACTTTTCCTACCATCAGTACCCCGTAGGATTGCATGTTCCTCCTTGGGCTACCTGGATCATGTTTTATGTGTATGGATGCATATGAAGATCAGTTCACCTCATTACTTTTCCTACTACCAATACCCATGGGATTGCATCTTACCTGGATCATGTCTTTTGtgtgtgtatgtatgtatgtatgcatgCACGAGGTGTAATGTCACACAGCCATCTTTTTCTCTACATTCTCATTGCCCACTGCACCCTTGTCCTCTTATGTTTAGTTC---CACCTCCTAATTAATGACTTGTTAGGAGAAA-AACTAAACTATGGTCAAATGGCCGCCTGTCCACCACTCCTTATCAATATTCCATACAGCTGCTGGGAAAGCTAATCTTCCACAC-TACACAGTACTCCTAGCTACATGACATTCAAATGCCTCTGCTTGCTCTTTAAGAGTA
s HiC_scaffold_1 140917687 2727 - 233722169 actaTACGAATGGTCCCCAGTTTACCTTAGGTCCATAGAAGGCACCATCTCCAGGCTTAAGGTCCCAGGGTTTTCCAGATTCCTCTAAGGCCTGCTGAAGGACCTTTGGAAGGAATGAGTCAAGAGGAACATGTTACCTGGGGCTTCACAAACACCACCACTCATCATTGCCCAGTGACTCCTAGCATGACTCCATGGTAGGAT------AGTGGTTACCAccttcacccccacccccaccgcaGAGTGGTTTATTTCTGCTT----TCCTCCAAGCCTGCTTACCTGTTCAGCATGGTCCCAAAGGTGAGATTCCCCCAGGAAGCCACTTGGCCGGGTGGACAGTGACAGATGGAAGGAGAAGCCAAGAACAGCATAGACAGAGTGGAGGAAATCAAGACAGCCTCGAATCTCTCCTTGTAGCTAGGGGCAGGAAATAAGAGAGGGTGAGGGGTATATCAGCTAGAGATCTGGGATAATGG-TAGTTTGGgggaaaagacaatgaaaatacagaGGGGAAGT---------------GGAAGGCAGCTACAGGCAGTGG-----------TAGCAGGACTG--------------------TATTATATACAGAGGGCAACTGAGGATTAAAGATGCTTGGAAGTTCATT----------------------AACATAA-TTAAAGGT-----------------------------------GGGTCAGGAGATACTCTG-------------------------GTGGGGC----------CAGGAAGAGCCACCTGATTAGGTGCACAGAAGATGTGAGCGTCATCTTGCTGGAAGCGCCAAAGTCGAGTCAGTCCCCCCAGGCTGCCAGAGGCCTCAGCTCGATGCAGGGCTCCGAAGTCAGCTAGTCGCACAGGCAGCTCCCGCCAGGATCTGGGCCGGTGGGCGAACATCAGGCTGAGATTGAGGAGGGGAAAGGGTCAGGGCCATAGGGAAAACCAGC---------------------------ACCTGACAACTGCT------------------------------------------CCTCCCCAACT----------GCCTGTGTA----------------------------TTCCCTGCACCTCCAGCT-----------------AGCATTCTCTCTGCCAAGT----GCCCATCACAGTTT--------------GAGCCAACCGGGGTC--------------------------AAAAGCCAACTTGTCAGTCACA-TACAGTAACAACATCATTTACCATTCTCCCATTCTCAGTGATGGACACTGAGCTTTGATGCtacttg----------ttttcaaaat----tttgtttactttttatttttttgacacagcatcc----------------tctcactatgcagttcagg--ctggcctttaaacTCATGGTGGTGCTCCTGTGT--------------CAGTCTCTGTGTGTCACCACGCCCGGCCTGATATT--CCTTGTA-AGGAGACTGAGACTCAACAGGTAGAA---TGATTTCCTC------AAATCCATTGGGTTGGCTAGAGGG--------------CAGATTCTAGAGTCAAATCAGATGTTCTACTACTC----TTTCCCAGCTGTTTGCCAGCCCCAGGAGGACCCAGTTGTCCTCGCTCCCAGCTCACCAGTGTGCAGGGCAGTTCATGGGCTTGAGAGCAAGTGTCTCTGTGGGAGGCCTGGCAAAGTGGTCACTCTGGGAGCTGATGGGCCTGCTGGAGCCCTTGGGCTGCAGGGTAAATATGTCTTCCCTGTAGTGCTCCCAGTGTCCTGACTGTTCCCACAGTTTCGCAGAGAACAGTGTGGGGGTTTTCACCTCTGAAAAACCGTGGCGGGCATACTGAGCCTGGAGAG--AGAGCAAGACATGGAAGGTT-AGTATCACTGAAAGGAGAAACAGCAGGAAGACTGCTGGCTGATTCTCTTGGGCACTCAAACTGTGCTGACTTCAGCCACAAGTTGTTAtgtgccct---------cttcctgctctCCTACAGATGCCCACAACTGCAGGACCTTACTGCAGATCACCAGCACTTTACA-------GTGTATGCTTCCTATTTTC-------------------------------------CTCTCTTAAACCCCATG--------------GCTTCTAGGCCCTagtccttc------------------------------------------ctttccctttttcccctGGACT--TGGTCTCCTTACCCTGATGAACGCCACCAGGGCATTATATACCCTGGTTCCACGTGGCAGGAAGAAGCAGCTTCCAGGGCTAAATTCATGGAAAAAGAAGAGTTCCTGATCCTAGGGACAGAATGGCAACTGTCATTTCAAGGTGGGGCAGGGGACCtcagaaatcaaagaaacaacTGACAGAGCT-----------------------GCAGA----------ACCTGTTTAC--------------TGAACCT----TCTTGCAACCTTGCAG----------------------TTAGGTTCTTCC-----------------------------------ATTTCTCT-------------------------------------------------CCACCCCATAT------------------CACCACTTTACCCTATTCCCGAGATCTGTACCTTTCCAATGCGCCTGTGGTCCCGAGACCCTGCTTCCTCCCTCTGTGCTTCCCACGCCCTCAGCAACTCCTCCGTGGGGAAGGAAATCCCAGACACTCTCTGCAGTGCCTCTAGACTCGATGAAGATCTCCACAGGGCCGAGGAGCTCTGCAGGACGACAGAGGGAATCAAAGGAACG------AGGACAAAGGTGTTTGA-CTCTTTTCAAGCCTCAAGAGATAGTCAGTGTAAGCGGCACAGGTTCACCCCCTTCAAGCTGGTCCCACCCCACCTTGCTTGTCATTGCCTCCG--ACTGGAAAGATGGGAATCCTTGCTCTGGACCCCTCTGGCCATACTTACAATTTAGGGTT---TGCTGCGCTGGGTTC-CTACATTAGTCTTGGT-----CAA-GCCCA---------GTCTTACCT--------------------------------------------------------------GCCACTTATGTCTCCCCATTCTCACTGCCC------TAGTAGTATTCCTATACTTAGCTCCTTCCCTTTCTAATGAGTTGACTGTTCAGAGAAGTAACTGAACTTCAGGTAAAAGCCAGTTTATCCAT--CCCCTTATGAATACTCCACACAACTCCTAGAAAAGTCAGACTTCCTTCCATGAATCCTATTTCTGgtcacatgaaattttaaaattt---actgttcTTTAACAATA

a score=31373
s chr3            95750130 1571 + 160039680 TAAGTTGAATTCTGGACTCTGGCAGGGGCTCCAGTACCTCCAATGAAACCTTGGGATTTCAGA--ATGGAGA--AAACCCTCTTTTCTCCTAGATCTCCTCATCAGCCATGAGGACAGAG-AAGGGGTAGGAGAGAAAGGACCACCCTCTCCATTCTCTAGCTTTCTCCTGGGATAATGGGAGTACCACCCTAACCCTAACCCCACTACTCACCGTGAGCAGCTTCAGTGCTCCAATCTGTCCAGTGTGCCGAAGATGGGGGCCTCGGCACAGGTCAACTGACATGCCACACCTGAGAGAAG--GAGGTGAGCCAGTGAAC---AGACATGCCAGATCTGA------------------------------------------GAGAAGGA---------------------------------------GGTACCCAGGCT---------CTCCTGTTTCCCTTTTTTCCTC----------------------------------------------------CCTTTCAGGGC-TTCAGCTGACAGAAGA----GGTGTTGAGGAGAGAACTGT-CTTGCTGACAGAGCAATGGCAAACAAAAACAAACCCCTCCTCCCATTTCTTTTT-CTGGAGCAGTACGGTTCATCTGCCGCCACCCTTCCTTTA-------CCCCAGGTCTGGCCTCCTCAGAGCGCCCCTGCGTTCTTCCCTCTT-----------GACAAGGCTCACCCATACACTGTTGCCGTTGGGCCTGTCACTTTCTCCTCGATCAGATGAAGCTTAAAGTGGTTGTCCTGGAAGAA---------GGCAGACAGGGACCATGAATCCGCT------AGGACGCCCTGG------------------------------------GCATCAC-----CCTTTCCTTCAAGCC-----------------------TTACCAAG----------------------------------------TTCCTCTCACACACAGCCGGATC--------------------------ACCTTGAAGAGCTGGCGAAGCTGATCCCGTGAAGCCTCCAGCCTCCGGAAAGGCTGTGCAGCAGCTATGAGCTCCTGGCAAATCCGCTCTAAAATGGGCAACTCTGCGCTGCGGACTGTCCTGGAAAAGGGAGC-TTGCTAGCTTGCTTCTTCAGAGACA-ACTCCTGAGTGATGACAT--GCTAGCTAGGGAGTAAAGTCCTGACCTTT---GACAAAT---CTGTAATTACTGGCAAAGACAAACTTAGAGAAAATATAATAGGAAAGCAAGTATAGAttttctctgtgtgtatggtgctggacattgaacccagggccttgctcatccttggcaagtactctaTaggatcgtgagtt-caacaacagcctgggctacaaaat----------gagaAagagagagagggagg----------gaggaaggg-----------------------------------------------------------------------------aag-------------------------------ggggAGTGTCTG---TTGAGAGAGAAATGC------------TGGACGGACAAGAGCAATGAGGGTGAGGTAACATTTGAA--TTCGGGAAGAGCAGAAAAGATGAGTTTCAGC---GGTCAGGAGAGAGACAC-ACTGGATGGAGAAGGGATGGAAGT-TCCTGTTTGGTGCCTAGAAGATCTCTTAGCTTCTCCTCTAAACCAAGAC-------------------CCCAGAAACCACCCCAGAACCAGACTCCTTTTTT---TTTGGACTGCTCACCGTTCTTTTCCCAGGAAGAAGTCATGGTAAAAGCCCGATTCTGTGCTTGGACCTCGGCAGAGAACAGCACCCAGTTGTTGCTCAGCCGCAGCCCCCAGAACATGGGCACTAGAGTGCCAGAACACCTGCATTCACAAGAGCTAGGTCTGAGCGCTTCAA-GCTCCTGTGAAGTCCCAG--CTCTAATGCTTTCCTCAGA
s HiC_scaffold_1 140922453 2040 - 233722169 taaattggtttCTGGGCCCTAGCAGGGTACCTAGTATCTGTCATCACACTGGGAGATTCTAGAGTATGGGGACCAAGTACTTTCTTTTC-TGGATTTCCTTA---GCCACGACAGCAGATCAAATTCTAGGGGA--CAGGACTGCTTTC-CCATCCTCTTGCTTGCTCCTGTGAAAATAGAAGCCTCACCCTAGTGACAGTCTCTCAACTGACCGTGAGCAGCTTCAGTACGCCAATCTGTCCAGCATGCCGAAGGTGAGGCCCCTGGCAAAGGTCAATTGACGTGCTACACCTGGGGAGAGCAGAGGCCAGTCAGTGGTCTCTAGAAAAAACTGTTCtgaatgtttctctctctctctctctttttttttttttttttttttgagacaaactctggctatatagtgcaggctggcttgaacttgcttatggagctcaggatagccttgaacttgtggtgatcttcatACCTCAgcttccaaatgctgagattacaggcatgtgccaccatacctggcctcctTTTCTTTCATGGTGTTTAGCTAACAAAGGAAGGAGGCAAAGGGGAAGGAACTATTCTAAGAAAGAGAACAATGccacataaaaatcaat------tttcatttcttttttctggagcAACAGAGATTACTATCCACTTCTCTTCCCTTATGGCTTCCCTTATGGCAGACCTCTCTGCTGCTTCCCTGC--TCTGCCCTCTTTTCTTCAGTATGACA--GCTTACCCATACACTGTTGCTGTTGGGTTTGTCACTTTCTCCTCAATCAGACGAAGTTTAAAGGGATTATCCTGGAAGAAAAGTGGATAGCAAGAGGGGAACTAAGTCTTTATTCTTATAAAAATGTCCTGGTAAAGAGCTGgccctcggggctggggatttagttcagcagcataagcacctgccttgcaagcaggcagtcgtgagtttgatccctgttaccaataaaaaggaaaaagacaaaaaaaaaaaaaaaaaaaaagagctgccCCTCCTTCAAAGCTCAGTCTTTTTCCTAAAACTGCACTATAACCCACCTTAAAGAGCTGGCGCAGCTGATCCTGGGAAGCCACCAGCCTGCGGAAGGGCTGTGCATCAGCTGCAATTCTCTGGCAAATTTGCTCCAAAATAGGTATCTCTGAGCCCTGAACTGTCCTGGAAAAAGCAGAGTTGTTGATTTACTTTTTCTAAGAAGCATTACTACGTGAT-ACATCAGTTGGTTAAG-AGGAGACTCTTTAGATTCCAAGAAAAATAACCTACAAGTATTGGCAAAGACTGA--TCAGGAAAACACGATTAGGAAATGAGGaagagatttgtgtgtgtgtgtactgctgCAGATCAACCCTTTGGCTCTGC-AAGGCTAGACAAGTATTTTA----GCACTGAGCCATATCTCTAGCCTGAGGTATAGATTTTATAGCTGGAGGAAAACTATGCAAGAAGGTTTTTTTGTTGAGCCAGggcttcagactggccttgaacacactatgtagcccaggctggcctcaaattcatagcaattctcctgcctcaatttcccaagtgctgcaattatagTTTCCACTACCAAATCTGGGATATGTATGAAATTAAAAGCTGAGTGCAAGCAATCTAGATGGACAAATCAGAATAAGGATAACGAAGTAAGATTCGAAAATTTATGAAGAGTA---AAGATAAATTGCAAGCAGAGTTGGAAGAGGGACATGACCTGATGGAGAAGTTGTACCAGTATCACAAATGAGGACTAAA--------tagctttctctttaaattaaaccTAGCTGAAGCCTCAGAAGTCTCAGAAACCACCCCAGCATGAAATCGCCTTATTACTGCTGTACTACTTACCGCTCCTTTCCCAGGAAGAAATCATGGTAAAAGCCATGTTCTATACTTAAACCTCGGCAGAGAACAGCACCCAAGAATTGTTCAGCTGCTGCTCCCAGGATATGAGCACTAGAGTTCCAGAACACCTGAATTCACAAGAA--AAGTATCAATGTATAAACTCTGCCTTTAACTCCTAAATCTCTGATCTTTTCTTCAGA

a score=21337
s chr3            95752204 1113 + 160039680 AATAAAAAACATTTAAAGAAAGCAGAG-----------GGTCAGTATTGTTTCTTCTGCTACTGAGTGGAAG-TGTGGGTCCACCCTACACATCCTCAGTGTTTCCTGGACCAGGAG-----------GCCAGGTCGGTGGCCTTTGTTGCTCCTGTAAGCTTCAGGGCTTCGGTATATACTACGT-----ATAAAACATGTGCTGGCTGGAGGGAAAGCTCTTGCTGGAGCCTGaacctgggctacatagccagacactgtcctaaaaatacaaaaCAGAACAACAAAACCAACCCACAGTTCTTTAATACTGCTGTGTGTGTTGTTGCTACACACCGGGGCCCCACCCAGTAGCTGTCCTAGCAGTCTGTTTTGCTTAGTGCCATTATTTTCTGTTCCTGGGATCTGCTGGGATGGAACTATTCTT---GGGTTGGTTCACTAGTCACATTTAGATGATAAATATATTTTTCTGAACTCTAATAACAAACAAAGT------------------------------------GGAAGGCCCTGGCTTTTGTGCTCCGTTATGGAA--CCCATGAGAACTAGGCAGACATCACGGATGACTTACACTGT--GTGCACAAGAG--------GTTGAATAGGT------TAT-CCTATTTCTCAGCCTTTTCTC--CCCCTTTCACAAGCACACAAGGTATTTGCTTTATAGACCAATGCTAAATAAAAGCCTTCATGAAGACTTTCCAGGTTCCACAGGAATAATTAGTCTGTGATCAGTCTCCTCCCCACTTTTGAATTGAGAAAGTGAAGCAAAAGAACAATTACATT-----TTCCTGTTTAAAGATCACTCAGATAATTAGGCACTGTGCTCACCATATGGGAGAAACTTACCGCTTTGCCCTCTGGGGAATCAAATGTCAGAAATCTGAGGTGACAATCTGTCTCCAAGGGTCGGTCCAGATCGTAAAGTTCTCCATTTACTTCAGCAGCCACTGCAGTATCAGCCAGTGTTACACTGTAGCAGTAGGAGGGTAGTGGGAATGAAGACAGAGTT---GTTACAATCCCCAGGGCAGGAGGCTGACT--TTTCTCAGCAACTCT-AATTTGCTGAGTG-----AAGTTTCCAGAGCAGTAAAGATCTGCTGTTTCTTTTCCCAATGTAT-CCACTACATTGGGAAGGGCAGAAATTCTGAAACT-ATAAAGACAAA
s HiC_scaffold_1 140924580 1097 - 233722169 aagaaaaaaaaattgtagacaACAGAAAAAGATGCAGAGGccagtattttttctgtttc-actgaaCAGAAGCTACAGCTACTCTCTTCA-GTCTTTGGTGCTTCCCAATCCTGGAGCACAGAAGCAGGCCAAATAGTCTTCTTTTGCTGCTCCTGTAAATT--AGGGTTTCAAGGTAGActatcttttctgttttacttttgttcttttggtgG--------TCCCAGGGAatgaacctagg-------accttgcac-ATTCTAGAAG---------------------------GCACTTTTT--------CCCTGAGTATTGTC--------------CCCAACCCTCTGTCTGGTCT--------------TTTAGTTCTACTATTATCTAGCTCAGCTATCTAGTGTGATGCAACTACTCTTCTAGGATTTGGTCTTTATCCATACTCAGAT-------CCATTTTACTGGATCCTAGTAGT---CAAAGTCCGTGTTACCTGAGCTGACATGAAAAGGACAAGTAGGGAAGTGACCAGGCTGTGTGTTCAGTTGCAGCAGCCACATTTCAGCTGAATATACACCATAAATGACTTACAATGTAGGTGCTCAAGAGCTGAGGAAGTTGAACTGGTACATTATATATCTGTTTTTCAACTTATTATCACTCTCTTTCACTAGCACAAATGATCTATGCTTTTAAGATTACAgctaaataaaaacat-cataaa---tTTCTGTCTCAGCCAGAAATAA-------ATGGTAGGTCTTGCTCCCAACTgcaaatggagaaactgagggaAAAGAAATACTATACTAGAATTTCTTGCTTAAATACCTGTTAGTTTACTAGTCATGGTACTCTT--TATGGAAGGAACTTACTGCTTTTCCTTCTGGGGAATCGAATGTCAGAAATCTGAGGTCAGAATCTGTCTCCAAGGGTCGCTCCAGGTCAAAAGGTTCTCCATTCACTTCAGCAGCCAGGGCAGTATCTGCCAGGGTTAAACTTCAGCAGTGGT------GTAGGGATGAAGAAAATGGCAGGATTACAA--CCCATGGGAGAAGACAAGCTAATCTCTTGGTAACCCTAAATTTGTAAAGGGCAGATGAGCTTCCAGAACAGTAAAG----TCTATTTCTTTGTCCAATAGATAACACAAGATT--TAAAGACAG--ACTCTGAAACCAATGAAGATAAA

a score=52307
s chr3            95754308 2783 + 160039680 GGCTTGATACCTGATCTGATGGGCCAGTTGGTAAGGGGTTGTGTTCCATGCAACAGCATCTACCTTCTGGCCTTCAGGAAGTGATATCTTAATAGCCCGGGCTTTCTTCTGTGTCATACTTGCTAACTTTTTCACGTGAGCGGTCCATAGCTCCTCAAAAAGGCCAAATCGTTCTGCCAACCAATGTGGAGGAGTTGGTGCAGAGGCCTGGAGGAAAAGGCACGTTAGGAGGTATCGCGGGCTT----ATTTCCACTACTCCGGAATG-GGGTCGTAGGGGTTATGGGTGTTTAAGAAGCATTGGTTTTAA------------GGTGGAAACTGGGTGACACTAG---------------GTCTTAAT-------------------------------------------TTGGGGATTCAAAGGAACC-------GCACATTTCCGAGTG--GGGCAGCAGGGT--CCAGGAGGGGCTGGACAGC--CTGCCCC-----CTTGGACTCCGCTGGGCTAAATGGTTGGGAGC-TTGGCGTACCTCACGCACGGTGTGGAGCTCGCAGCGGCGGAACTCTGGGAGTGGGAACCCAAGCCGG------CGCCACCTCAGACAGAGACCCATGCTGTCTCAAATCGGTACCTCCATGCTCCGATCACCGCTTCTTCCTCACCAG-GCTCCTCATTGGCTTCTAAGTCAGTAATATCCTTTCCTATTGGATAACATAGCCGCCATTCCGGCCGGGCACCACCCCCAGGAACTCCGCTGAGGTAGAACCCAC----ACAGCAGCAGCCGCTCTGGGAAAGGTTCCGGTTGACCGGAAAGTGGAAGCTGTTGCACACACCTGCAGTCTGGGTTCCCA-----------------------AAGTGACAAGAAGGCATC---CAACTTTGAGGACAG-GGCATACCTCCTGGGGCAAGAATGAGAGAAAAACA----GGAAGTGGAAGTTAGTCATTTTCCtttaattataaaatttattaaa---CATTCTTAAAGCTGACAAgaaac------aagtacagacactggaactaaac--atttagtgtaaatcctggatctggcattaagtagtttttttttttttaagtaaactttctgtaatctcgattttttaatctataaaacaagaataaaaatatatgttccattc-tgaaggtacattttgtgtaaattgctcatctcggtgcttggtatatgataaTTAGCACCAGCAGCAAGACAC--TGGttttgttgttgtttttgttctctttttcccctaggctgtcctggaactcac-tctgtagacc-----------------aggctggcctagcactcagaaatcca--ccagcctctgcctccc---gagtgctgggataaaaggcgtgcacgcccactgcccggctTGCAAGACACTGTTATTACCACTGAATGTAACAACT------CTAAGACTA-----------TCTTGGTGGTCATTCCT-TTGCAGTCGTGGTGGAGGGACTTTAGAGACCTCTTAATGTCACAGATGTGGAATTTAA-----------TCAATCAATCATTATtgcgtgtgtgtgaagaatctttgaaggcgtgggcggcacagttttgtaggtcacatgct--------------------acctt---tctgtggccacttctgtcctttcactttacatgggtct---------taggggtcaaag-----tcacgttgccaggcttgggcagtaagtacc-tgttatctgctgagccatcttacaggtc-tcAGATGTGGAATTCA--------------AAGATTACAGAAGGTAGTTTAAGGTAAAAAACA-TGCGTGCCGATG----------AATCTGCAGTGTGCACTCTTCCAGCATACCTTGTTCT--TTCCATAGTTTATTTCCA--ATAGACTCCCTGACCATCTTAGAGACATCCAACATCTTGTTCTCTGTTCCTTAC-ATAAGCCTTTGGTCTCTCATCAGCACCCCACCTTCATCTTTCTTTATTCTTTCTTTGATCTCTCTCCATTAAATCTCAGATGCAGGGCTAGACATATTAGCTTTACACAGTAAAAACAGAAACACGGTCAGATGTGTGGAGAAGCATAAAGGGAAATGAACT------TATTAGCACCCTTATTAA--CTCAAGTAGT-CCCTCACCTGGGGGTGGGGACACTT--AGTCCATTCCCAGATTGCAGTGGTGATGGGATCATGGGGTCTTGTGGAAG---AGTTGTCAGAACAAGCTGCTTAACCTAGGCTTCC---AAAGCCCAATGTTCGTTCTGCCTGAGGAGGGCAGCTGACTTGAGTCATAGGCCACTCTGGGGCTCCATCTTCTGATATGTTAGACATCCTGAAATACAAAGAAAGAGACAAGGCTGTGGGGAGGAAGATAGTGTGTGTGTGTTCTTGTGGTCAGAGTGCAACATTC-------------------ACAAAAAATGGCAATGGCAGACCTAGATTTTTTTGTGGCACT--ATAACAGAGGCAGGGTAGCGTCATACTGCAGACAACAATCTAGGAGGTGCTCAATAAATATATGTTAAATATGTACTGATCATGTAGTGACTGT----AAATTTCAAAAGGTAGAGATTTTTGTCACTACTTTTTAAATTATTCTACAGTGTCCTTTTGTTAGGATCACAG-----GGAG-----ATACCACCCGGGAATGACAGCTTCTTACACGCATCCTTTA-ACATTTACTATGTGCAATGCACTGGGC------------TAATGCTGAC----CAG--------CTACCAACATCACGCAACCTGCAGTGG----AAGGAATGTTGTGTTATTCCCTCACCCACTGTAGCAAGCCAGG---------TATCTAAGGCCAATACATACTT-GTTCTCCTTGAA-------CATGCCTTGGCTTCAG-------------------GAGATATT-----------------------------------------------------------------------------------AAGCTTTTAG----------TCTACCTGGAAAACACCTCTGCAACTTTC-TTGCTCACC----------CCACTCTTGCCTGCCAGGA-----------TCCCGAGATGTGGCACTATTTCACAATTCCATCTTATTCCAAGAA--CAACTCTGTC-AGTAGTGTTCTTATGTTCCCTTTAAACCCTGGAAAATTAT
s HiC_scaffold_1 140925755 3130 - 233722169 GGTTGGATACCTCATCTGCCGGGCTAGTTGGTAAGGGGTTGTGCTCCATGCCACACCATTTACTTTCTGGCCTCCAGGAAGAGTCACTTTAATAGTCCGGGCTTCATTCTGTGCAGTGCTTGCTAGCCTCGTTGCCTGAGCAGCCCACAGCTCCTCAAAAAGGCCAAGCCGCTCCACCAACCATTGAGGAGGGGTCGCCACGGACGTCTGAGGGGAAAAATATGTTAGGCGTTAACACAggtttcataatttctttta---ggGGCTGAAGATGGTAGGAGTCGAGGATACTCAAGAGCCCTCAGCCCTAATCTCTGGTTCTTAACAAAGGGTGGGTAATACAGGTTTTGGAAGAGTAGTATCCTAATGGATACTACTTCCCTAAAGTTCTCTTTCCAGACAGATGGCCAACTGAGCACT--AGGGTACCCCTGTCTGAGGACTTCAGAGTGTAGGGGAGGGGAGTAACGGCGAGTGGTTGGACTACGACTGCACCTCGGGCTTTGCTTGGGCTGGGTCCCATGGTTCGGAACTTTTGGGTACCTCACGCAAAGTATGTAGCTTGTAGGCTTGCAACCCCGGGAGCAGGGACCGGAGCCGGAGAGATCGCCACCTCTGAAACAGCCGCATATTTCTATGAACCAGCGCCTACACCCTCCGATTACCGCCGCCTCTTCACTAATATTCCTCATTGGCTTCTACCCCAGTAACATACGTGTCTATTGATTATCGTAGCTGCCACTCTGTTCTGGCACCACCTCCAGGAACTACGAAGAGGCACACCCCACCACAACAAGAATAGTGGCT---GGAGTGGTTCCGG-CGGCCGGAAGATGGGAACTGTGACACACGTCTGCGATCCGGAAACTCACCTCATCTCAATTGAAAGCCCGGAAGTAACAC-AAGGTGTCTGGCGGCCATGAAATCAGAGGCGCGAACCTCAGGACAACAGTGGGAGAAAAACAGACCGAAAATGGTAGTCAGTCATTTCCCTTTAACCAAAAACTTTCTTTTACCTCATCTTTAAAGCATGTAGGAACCTGTTAAGAACATAGACTTTGGAACCAGGCAGACCTAGTGTAAATCCTGGGTCTACCGTAAACTAGtacttttt-------gtaaaattttaaatttctctaactTTTCA-CTATAAAA-GAGAATAGAAGTAGCTTTCCCATTAGTTGAGGTAAACTTTATGTAAATCATCTAGCATAATGCTTGGTA-ATGACAAT-------AGCAACAGGCCATTATAATTGGGCTACAGTCTTAAAGTGGAAGCCACCATGGGGCATGGTGG--CCCACgtctgtagtctcagcacttgggaagctgaggcagaaggatcactgtgagttcgaggccagcctgggctatacagtaagttcaaggct----ggcttgcA----------CTGCattacaagaccctgtcttaa-----gaaaataaaagttgaacTGCGGAGTCTGCAGAGGTCAGTTTTCGGAGTTCATTCATATTAAAGTTCT--TAGA-GGACTTTAGAGA----TTAGTCTTACAGATATGGAAATTAAGGTCAGGAATGTTAAGTAAT--TTAATGT-------TAAAGAGTGTTGCCAGGGGT--GttgcacaggcctgtaatcctaacactctgaagactgaggcaggagaatcttgagtttgaggccagcctgggctacatagtgagcctctgtctcaaacaaaacagagaacaaaaagaGTGCATGttg---gggttggagatttagctcagtggcataagc--gcctgccttacaagcaggcagttgtgagttccatccccggtaccgataaaaacaagaaagacca--------aaaaaacagtGCATGCTGATGCTGGCTTCTAAATCCAGGACTTGCATTA-TCCATCCTACCTT-TTCTAGTACTATA----ATTTCCAGTATAAATTCCCCACCAGAAAAAAGGGTGCCTCACA-CTAGCTCTGTGCTCCCCACAAAAAGTATTTTACCTTTCATTTCTATTccagctttcagttttttctttttctccctg------------------ttaCATACAAGGATA---ATAATTGATTT-TATAGCAAAAATACAACCACCACTAGATTTGTAGTAAAGTATGAAGGGAAATGAACTGAGGGCTACTGAGGCTCTCAGTAATTCCCAGTTAGTGCCCTCACCTCGGGGTAGGAATCCTTAGAGTTGGTTCTCAAGTTTCAGTGGTGATGGAATCAGGG----TTGTGGAAGAACAGCTGTCAGAGAAAGCTGTTTAATTTAGGTTTTCCAGAGAGGCCAGAAGTTGTT---TCTGAGGAGGGTAGTTGATCTGAGTCATAGGATCTT----GGCTCCATCTCCTGGTATGTTAGACATCctgaaatacaaagaga-----aagacTGTGG---AGAATATTACTTGTGTTTATGTATGTGGTCCGGAGAAAATAGTCAGAATTTGTAAATGATTTGAGAAACGGTGACAGTGGCAGGCAGGGCTTTGCTTGTGGCCCTGCACAAAAGGGGTAGGGGAAAGCTATATTGTAGGCAACAGACtggtagatgctcaataaat---tatTGA----------ATTATGTAGTGACTGTACTGACATCCCAAAGGA-------CTCAGGCacaatttatttaatcattctaTCTTAACCTTTTGTTAGGATCATAGATGGTGGAGTAAGTAGGCCAACCTGAAATGGAAGCTCCCGACACACACCCTTTAGACATTTACTGAATGCAACGCACTGAGCTGGGTGCTAACATAATACCGACTCATCAGCCACTTTACTACCTACGTAACTTGTGTTGCAGTGGAAGCAAGGAATGTCAAGTTATTCCAT----CCTTATAGCAAGCAAGAAGCACAAGCTAGCTAAGGCCAATTTAGAATTGGTTCTGCTACAATTTCAACCATGTCTcagcctcagattttttttttttttttttgagacatggtctcatgctgtagttcaggctggttttgaactcactgtgccgTCCAGGCACAATGTGGGCCACCAAACCTGGCTCAGcctcaaaaattttaattcagtaaTCTCTGCCTGGCAAACATCTCTGAAACTTTCATTGCCTACCCCACCATGTGCCACCTTTGCCTGCCAGAAAATGACTGAACACCTACTGTGTGAC---ATGTTATGCTTTCATC-AATTCTTAGAACTCAGCTCTATCAAATGGTATGCTTACCCTCCCCTTCAA----GGAAAATGAT

a score=344728
s chr3            95758084 8841 + 160039680 [encoded data, 9463 characters]
s HiC_scaffold_1 140930850 8674 - 233722169 [encoded data, 9463 characters]

a score=28331
s chr3            95771842 758 + 160039680 ataactGCTACCTCATAAATGATAAGTATAAAGACAGTAATGAATTAACTGTATTGTACATTTCATGACTTTGGATTCCTCTGAGTTAGAATTCAAGGTTACCCTGGAGACAAACATTCACAATTCAAGTCCCTCTGGCACATGTCAGTTTACCTTGGAGTGCAGGGGCTGACTGTGTCTGGGTTTTAGAAAGAGCAGAGAGAATGCTCTCTGGGGTGATCTCCACCTTTGACAGGATATTTGCCAGAGGGTTGTGAGATGGTGTTGTGGCAGGTGCAGGTGTTTTCAGGCCACTGCTGAGGTTGCTGGGACTGGTAGGAATTCCTGGAGAAGGTCTTGATGCAGAACTGACCCCTGGTGGCAGAAAGATGAACTCAAGAAAATGCAAT--------------------------------------ACTCAATTCATG-----ACACTTTCCAGTCAA------------TGAAAGAT-------------TGTTTAATAGTAATTCTGGTTGACTGATCCACAAACAGTGCCCATTTTGACACATACAAAGAAAAACATCTGAAAATATGAACTGTTGTTTCTGTTTGGAATATTCTTAAAACAAACAAGCACTATGTTATTTTCATGCACATTCCTTGGTTTTCAGAGC------------------GGCAATCTGTTTCTGCACCCACGCTGCTCAGCGA-----ATGCAGCAGGA--CGACAGGAT--CAGAGGCACTACCAATGCAGAGCACCTTCACTGCATGTCTATGGGAGTGGCAAGGGTTTTCCTCTTACACAGCC--------------TTTAAGGTGACATTATACAAATAAATTCCTTTACACTGTTACACTT
s HiC_scaffold_1 140940963 826 - 233722169 ataaattccaggtTATAGATGATAAATATACGGATAATGCTGAATTAACTACATTATACATTTCATGGTTTTGCCTTCCTCAGAAATGGAATCCAGGATCAAATCAGAGATAAACATTCACCATTCAAGTCCCTCTGGTATATTTCTGTTTACCTTGCAGTGCAGGGGCTGACTGTGTCTGAGTTTTGGAAAGAGCAGACAGAATGCTCTCAGGGGTGATTTCCACCTTTGAGAGGATGTTTGCCAGAGGGTTGTGAGGTGTGGCTGTGGCAGGTGCAGGTGTTTTCAGGCCACTGGTGAGGTTGCTGGGGCTGGTGGGAGTTCCCGGAGAGGGTCTTGATGCAGGACTGACCCCTAGTGGCAGAAAGATGAACtcaaaataatgtaatttcaAAACGACTTTTCATTCACTTTCgctgtactggggactgaattcaaggcgtcacacatgctaggtaagtgctctacctctgaggtATATCCTCAGATCTCCATTTACT--TTCTTCTG--TGACTGATCCACAAATGATCCATATCATGGTatgaacaaaa------atctaaaaattaga-------------------------TTAAAAC-----TGCCTTgagttattttcatatatattcattatttttgaaaacctCTGTAAGAAGAGAACAGcccatctactttttttttccc-ctgccaaATGATACCTACACTTCAGAGCCCAGCAGTGTTCCAGAAACACTGCAACTGCAGGACTGTCATGACACATTTCTGTGTGATTGCTAGGTGATTTGCTTTTGAACAGGCTAagtgatttgctttttaaaatgaaattacagacataacttcctttatatttttcctttt

a score=19842
s chr3            95774032 410 + 160039680 AACAAAAAAACCCCACTTTGCTGGTTCAATGAAACAAAGACGGAAATCAGTGGCTCAGCA-TCATCAGTGGCTCACTTACCCGTATTTTTCATGACTGATGTTAGGCTGCTAAGGATGGAACTGATCTTTGCCAGATCCACATTTGCCAGGTTTGGCAAAACCAAAGTTGGGGAAGGGGACAGAAGTGCAGTGCTCAGAGGCTTCGGGAGAGGTGGAGCTGCCGTCGTGGGCACAGACGGTGGGGCACACGGTGAGGCTTTCGAGACACTTTCTGTTGACTTGGTGGGCACACCAGTGGAGACAGCAGGTTTCTCCACAGGCTTTTCTTTCCGGTCCTCCACTGTTTGAACAAACAAAGGAGATAATTT-------------------------------------------TATGACATAATATTTCCTAATTTGAGGGCACAAAGTTCTACA
s HiC_scaffold_1 140944119 446 - 233722169 aaaaaaaaaaccc-----tgatgatttaacttaaaaatgatgaaaatcagtCTTTTACCCCTCTTCACTGG---ACTTACCAGTATTTTTCATGACTGAAGTCAGGCTGCTAAGAATGGAACTGATCTTTGCTAGATCCACATTAGCCAGGTTTGGCAATGCCAAAGCTGGGGAAGGGGACAGAAGAGACGTATTCACAGGCTTTGGAAGAGGTGAGGTTGCTGTCATGGTCACAGGCACAGGAGCACACGAAGAGGCCTTTGAGATACTTTCCGTTGGCTTTGTAGGTACAGAAGTGGAGATCGCTGTCTTCTCTACAGGTTTATCCTTCCTGTCTTCCACTGTTTCAAACAAGAAAAGACATGACATGACACCCTACTGCCTTCCAGACTTTGCTTCCAATACAAAACAGTGTGTCCTAATATTTCTTGATTTAAGGGTAAGAAGCACTATA

a score=22777
s chr3            95776481 334 + 160039680 AATAAGCTACCTGGTAACCATAGCAGGCCTTACCAATGATTTTTGATCCATCATCTTCCACATCTGAGAGTTCCATGTCTTCCACATCACGGTTATCAGTCACAGGCTCGGGTGTGGCAGACTTGTCACTCTCCATGGCCGGTGACTGGGGTTCTTCACCTCCCATGCCCTGGAATGGAGACTCAGAACCAGTTGGGGAAGGAGCATCCATACTTGGAGAGGGGACTGGTGATTCCTCAGGATCAGGAAGGGTTGACTTCAATTGATCCAACTTCTTCTTTAAGTTGTTTACTCGGTTAGCGAAGGTTTTGTAAGCCTAAagagagagagagag
s HiC_scaffold_1 140948020 334 - 233722169 AATAATCTGTCTACAAAGCATGTAAGGACATACCAATGATTTTGGACCCATCATCTTCCACATCTGACAGCTCCATGTCTTCCACATCACGATTGTCTGTCACAGGTTCGGGTGTGACAGATTTCTCACTCCTCACAGTTGGTGACTGGGACTCCTCACATCCCATTCCTTGAAACGGAGACTCAGAACCAGTTGGGGAAGGAGCGTCCATGCTTGGTGAAGGGACTGGGGATTCTTCAGGATCAGGAAGGGTTGACTTTAACTGatccaatttcttctttaaattgtttacacGGTTAGCAAAGGTTTTGTATgcctgaaaaagataaaagag

a score=16233
s chr3            95780378 236 + 160039680 GTAAGCATTAAAAATGAAACAGCCAGAATTA---CTTACGTTAGCGACCACTTTCACTTCCTTGTACTGTGCTTCATAGAAAATTCCAGCGTTCTCTAATGCTTCTGTTAGTGAGGGCCCATTTTTCACCTGTTTATCTAATCCATTCACAAACTCCTCTAGCTTGGAACTTGCTTCTTCAAATTCTTTGGAGAACTTCTTTCCACCTGTTTTATCTGAAATAATGAAGAAAGTATTTA
s HiC_scaffold_1 140951881 239 - 233722169 GTAAACATTCACTAAGAGAGAGGTGTAATTATTACTTACATTAGCCACCACTTTTACTTCTTTGTACTGTGCTTCATAGAAAATTCCAGCATTCTCCAGGGCTTCTGTTAGTGAGGGTCCATTTTTCACCTGCTTATCTAATCCGTTCACAAATTCTTCCAGTTTAGAGCTTGCCTCTTCAAATTCTTTGGAAAACTTCTTTCCCCCTGTTTTATCTAAAATTACAGAGAAAgtattta

a score=107480
s chr3            95783980 3421 + 160039680 AGGGAAATTTATTGAATGATTTATAAGCTTTATACAAGTCAAACTGCTACCTGGGAAATCAGTGGAATCAAGGGTTCTGAAAATTGTTTCACCCTACCTCTCTTTAAACACTGTGGGTGATTCATTCCAGAAACACATCGAAAATTCTCTTTATGGGACAAACTAGTCTGATTACACAAAAATCAAAGA---AAGGAAACACTGAGCTATTTTTCTTGAAAAGATGT-GTGTGTTACCTTTTAAACACTTGAGAGTTTCTGTGCTGCAGACATCCACTCTCATAGTTGACAACTGTTTCTCCTTCAGTTCTATCTGATCTTCTGATCGTTTGTACATCAGCAACTCTTCAATGAGGGCCTGAGACTGAACACAAACCACAGTCAAACTCCATTCATAGGATTA---CATATT--------CTCCCCCCCTGGAT-ACATCAGACTAATGACTAGCAAAGCCTTTAAGGGGAAAA---------------------CAGAAATTGATCTTTAATTCTCA-------TGTCAAA-CCATACTCTTAGCTATACACTTTTAGGTTCTGGAagataggatcttactacataacc-ctgaaacttgctccatagaccaggctggtctcaaatgtgttcctgcctcctgagtgacagcataagcctttcaccaccacAATCAACAAGTTATATACTTTTTTCATCTATGCAgcacatgggtgccatagtgtatgtgtagaggtctgctgacaactcctgcaggaatcaactctctcctttcatgtgtgtttcaggaagcaaattcaggttagcaggttggtggcCCTCCCCAGTCCCTAATTATTCAAACTAATTTAC---------AGATATAAGATTAACACTGTAATAAATCCTAACACCCTCCTGACATTTAAAAAG----GAGGCTTCCAGATATCAGAACTGCGCACAGAGCGAAGCCAG-CAGCAGAGGTGCTGCCAGGCTGTCTCTCC-ATTAGGAAAGTGGGTAAA-CTCTAGGCCAACTATTTCTGTTCTGGATTCCC--------------------------------AATGTACACCAGAGCAGAAATGAGTGTAAC----------AGGGACCTGGCTTCAGAGGTGA---GTAAATCATCTTTGGCATACTTAGCATATTCTGTAACTTACTCGAAACTCAGCAACAATCTTAGATTTGAGAGCAGCTTTTGGATTCGTGGATGCTGTTG-AATGAAATTAAAATTCATTAAGAATACAG-CACAAGGACTTAAGCAAATCCAGGAGAA--CTGAAATGTAGAGTGAAGGGTATACTCTGCAAACATACAGCAGCCATGCATACATAG-TCATAATAAAATCCT----GCAGGAAATTAACTATGAAATCTAA-CACTCCTAAATATGGCCAGTAGAAAAATAAACTACTTAGATAAGTCTAACCAACTTACCTCCAACGGAC---TGAGACC-------------------------GAGGTA----GGTACATGAAGCACCTTCTCCTAGTCTCATCAAGGGTAAGGAAATCTCAGTATCTCAGTGTAAGAGTGTTCAGGAACAAGGCAGCCAATTAATCCTGAGTACTGGCTGGAGAAGATCCTCTACAAATACCAATTCCCATCTGGTTCAATTTGGATTATATTTTA----GCTGACTCAGTTCATAGCAACAA-----------AGGTCTAAACGCATTATCACTGTGATTGAACTTTGGCCAAACTGATGGGTCCTGTTGTTCCTAAGCATGCAATGTATGAC-AAAAGGATGCCAGAGGACTCCCTTAACCATGGTGAGAATCACATGCTTGACGGAGCAAA--CATCCCAACTCTCTTGTGTCACCTCCCAATTCTCCACTGTCTTTCACCTTCA--TCCCTCCAAACCTTCCAGTTTCTCCACATTCCTCAGTTTGCCCACAACAGTCTATCGCATGCAGCATTCCGCTCCCTTGATATCATGCTGGGCAAATGGGACAAACACAACAGGAGCTCCAGATA-GAGAATG--TTTCTGGCCAAAATTGGAGGCCCATGTCT-AATGTGGTAGTGT----CCCCAAATCTGCAGGCTTTCATGGCTCCCAGAGAAACGCTTCTTAATGCCTAGTCTCCTCTTCCGCTCTGTGGTGCAATGCCAGCTGCCTCTAATTTCACAAATCTTTGAATGTGGGAATT-GCCTGGGTACTAGGAAGTATTTTTTTTTCTTCTTTCAATACCCCAACTACTCCTGGATCTTCACTCAATTAAACCCTTTT-CTGTATTTCCTTTAATAGTAGtttttttttttttttttttttAAAAAAAGAAGTAACTTCATGCTGGCTTGATTAGTCTAAGTCACTGGGAGCCTCCCAGGCCTGGGAAACACAAGCTTGCCCATGGTTTAG-GCCAGGTACGATGTCAAATGGTCTACATTTTCTTCTGCTCCAAAAGGAGGAGGTAATTTTATGTTAGTTGAGATTTTGTTCCTTACTTTGTGATTTCTTCCACTGCTTATTCGGTTGTTTGTTCAGATTTTCTTTCAGCTGCTTCTGAGTTTTGAAAGTGGTACCTGGAAAACATTGCAGTTTTTGCAGTCTGGCATTATGGGAAGCTGC--TCTGTCCACTTCAGTGCCAAAGTTGTAGCATG-AAAAAATGCAATCCGTGACTCTGTAG----TTTCTTTCATTTCTTTTCTTTCAGTTTTATAAAAACAAAAAACAAAACCAGAAAACACCCACCAAATCTAAGAAGCtattaaataaatataaaaaatataattaatGAAACCTCCAACTCTGAAAA--------AAAAAAGGTCATATTCTAAAAATA--AGTTACTTTTGAATAGAACACAAATTCATATGAAGGATTTAACAGCTTCTTAGAAGGTGTGCTTTTAAAACCAAATTCCTGGTGATGGCTTGATAATGGTCACAGTAACA-ATTATTATCAACTTCTATTTGGTGATT---TAATTACTTAAATCTTATATGTAAGAACTAATTTACTTCCACACATACAAACACACATGCACACAAACCCAAGAATAGATATATAACTTACTGCAACTCTAAGTCAAATG-GAGATTAGAGTCTACTCAAGCATGCTCACCATCAACTTAAAAGCT--ATGAAAATATGCCCAATCTTTCTCCAACAGTAAGCAGACAGAGCAGAATTTATTACACATAACCAATGAATACTTTGAAATACTTAACGAAAGCAAATACAGGAAGAGCCAGATGGGCATCCTCACTTAACATGTTTGCTTTAGCCAGCAGAGACAA--AGATCCAACTCCCTGCACCATCCAGTTCTATTTTGAGTGCAAACATTCATACATTTATGTATTCAATTCTAAACAAGTCAATGCAGATTCTTCCACTCCCTTTAGTGTTATACAACAGAAAGGTCTATAAGTATAGACAGAACTGTAAAGACTGACTTAAATTCTTTT--------AGGAAAGGAACTTACTTAAAGCTTCTCTCAATGCCACAATCATGTCTTCTGGGTACACATTTCGATCTTCCCAGATTTTAAAGATTCGTTCTATAGACTTAGAGACGGATGGATCCCTGGAAGAAAAGCAAAA
s HiC_scaffold_1 140954120 3246 - 233722169 AGAGAAAGCTAAGAATTTATTTGTGGAATTTATATGAATGAAATTGCTATCTAGGGAACCAGAAGTACC-------------------------------------------------------TTCTAGAA-----CCTAAAGTTGTCTTTATGGGGTAAACTAGTTTAATTACCTGACAATTATGGATCTAAAGAAAAACTTGG----TTTTGTTCAAAGGATGTTAAGTATTACCTTTTAAGCATTTCAGAGTTTCTGTGCTGCACACATCCACCCTCATAGTTGACAACTGTTTCTCCTTCAATTCTATCTGATCTTCTGAGCGCTTGTAGAGCAACAGTTCTTCAATGAGGGCCTGAGACTGAACACAGATCA--GTCATGTTTCATTTACAAGGTTATTCCGTTTTTCTTTTACCTCTCCCTATTAATGAAAAAAGACTAAAGCCTAATAAAACTCAGAGAGGGAAAAAACCCTTCACTTTTTCTCAGTCAGGAAT--ATCATCAACAGTCAGGTGTCTtgtcaaaattgttttttaagttATATACTT---------------------------GCATAATTATTCAAAGTTAATTTACGAGT--------------ACACGTATACGctccctaaattaaaaaaaaa----------aagaaaatcttggggccagggatgtagctcagcagcacagcacctgtttGC-------TAAGTGTTAGGTCCTg-----agtttttaacaaaaaaaatttttttt-----------------------aaattagataaaCATAT--ATCACTCT-----ATCTTTATCTAATCAAATTATATTACCCTGTGTCTATTTATATTATGTCTGctgtaagaaa-attaaaatttagcagAACTTCAAAGAAAGATGAGTCTTCTCATTGGCTAAGTTA-ACACAGAACTCAGCTAGGTAACAGA--TTCTGA-ATGTTATTTCTCCCATCATGGGAACAGATAAAACTCTAAGTAATCTAAC-CTAATCTGGATTCCTTTAAACTGGTTCAAGTAGCTTAGAACACAActgatatataaatgaataaaaataaatcttactgAAATATATAGAAAACTGAACTTAAAAGAGccatatatattaattt----atatttaatgtattctGTAACTTACTCGAAATTCAGCAACTATTTTAGACTTGAGAGCAGCTTTTGGATTCGTAGATGCTGTTGGAATTAAACAAAATGTCATTAAGAATACAAACATAAAGAGCTGACTAAATTCAGGAAAAATTTTTGCTATATAGTTAAGGGCATACTGTTGGAACATAT----GACATGCACATTTAAATCATAATATACTTCTTAGAATAAAGAATGTACtatgaaatttaaacatttctaagtatagtcaatataaaaataaactatttagaTAGGCCTAACCCACTTACCTCCAACATACCCTTGAAGTCATAAAGTCCTACAATTACTGGTTTGGAGATACTGAGATACATGAAATACCTTCTTTGAG---------------AGGGGTCTCAATACCTCAAAGTAAGAATGTTCAGGAACAGGGCATCCAATTAACCCTAA-CACTGGCTGAAGAAAATTATTAACAAATATCAACTCTCTTCCCATGTATTTAGCCTTGTATTTCTTTGTGCTGGCTCAAATCATAGCAAAAATAGGCAAGAAGAGTTCTAAATAAATTATCACTGTGGTTGAACTTTGGCTGAAATGATGACTC---TTGTTCCTAAGCATGCAATTTATGACCAAAAGGATGTCAGCAGACTCCCTTAACCATGATGAGTAGCATATGCTTGATGGAGCAAAACCATCCCATGTGTCTTGGTTCACCTCCCAAttctc-acttttttaaaaattctgttcccTCCACACTTCAAGCTCTATCAATATTTCT--GTTTGCCCATAGAAGCCTATCACATGC-GTATTCCACTCCCTTGGTCTCATGCTGG-TAAATGTAATGAACACCACAGGAGCTCCAGTTAAGAGAATGAGCTTCTTGCCAAGGTTTGAGGCCCATGTCTTAATTTGGTAGAGTGGATCCCCAAATCTGAAGGATTTCATGGCTCTCACAGAAATGCTTCTTAATATCTAGTCTCCTCTTCAGATCTGTTGTTTAATGCCAGCTGCCTCTAACTTCATATATCTTTGAACCTGAGAATTAGCCTGGATACTAtcaaggattttattttcttctttcaat-cCCCAACTACTCTTGAATCTTCACTCAATTTAACCCTTTTGCTATATTTCCTTTGTTTAGAGTGGCTTttt-----------------aagaaacaacttcatgatgCTTTGTTTAGTATAAGTCACTGAGAGCCTCCTAGGCCTGGAAAACACAGGCTTGCCCATGGTTTATTGCCAGGTACGATGTCAAA-AGTCTAAATTTTCTTCTGCTCCAAAAAGAGGAGGTAATTTTATATTAGTTGAGATTTTGTTCCTTACTTTGTGATTTCTTCCACTGCTTATTCGGTTGTTTGTTCAGATTTTCTTTCAGCTGCTTCTGAGTTTTGAAAGTGGTACCTGGAAAACATTTCAGTTTTTGCAATCTGGCATTATGGGATGCTGTTGTCTGTCCACTTCAGTGCCAAAGTTGTAGCATGAAAAAAAGGCAATCCAAGactgtgttgtttttttctttctttccttttctttcatttttata------------tattttttaaaaaacctaccaGATCTAAGAAGCTGtcaaataaaagtaatttctatAATCAATGAAATAACCAACTCTAAAAAGATGGAGCAAAGAAGCT-------TAAAAATACCAATTA--------------ACAAATTCTAATGA---ATTTAACAGCTTCTTagataatgttattttaaaagcaagtttCTAGTCA------AATGACAGTAATTGTGGCAGATTATCATCAAA-TCCACTCAATGGCTTTATAATTACATGCATCATACACA-AAAAactaaatt--------acataaaaat-------------------aaaacaggcacaTAACTcactacaaatctgaatcaaaagagAGTCTAAAGACCACC--AATATACTTAGAACCA----AAGAGCTAAATGAGAA-----CTAAAAATTCTCCAAGGGTAAGGa-------cattatttgttaaatataaTCAATGAACAATCT------------GAAagcaaatgcagaaaa------------ataatcatttaatattcaatatttaa--aacaaacacaagcagatccaa---------------aattttatttttcatt--attatacagAGGACTATATCTGTCTctctata-----tattacatattttt-------ttttaatttt------------tgttttttaat---------------aaaactggcttaaatgtttattttagcagAGAAAAGACACTTACTCAAAGCTTCTCTCAATGCCATGATCATTTCTTCGGGGTATACATTTCTGTCTTCCCAGATTTTAAAGATGCGTTCTATAGACTTAGACACAGATGGGTCCCTGaaggaaaaaccaaa

a score=12128
s chr3            95790089 163 + 160039680 ATTTACTTACTTCACTAGAGCAGCTGCTTCAGGAAGCACATCAGCAAATGATTCACGAAATATGATTGCATTTTTCCGTTTACAATTCTGTATGACATCATTGGCAAGATAAAAGAGATTCAAACGATGGGGATATGTAGCTGGAGAGAA-GAGATAAAAAAAA
s HiC_scaffold_1 140968068 164 - 233722169 ATTTACTTACTTCACAAGAGCAGCTGCTTCAGGAAGGACGTCAGCAAACGACTCACGAAATAtgattgcatttttccttttacagTTCTGTATCACATCATTGGCAAGGTAGAAGAGATTTAAACGGTGGGGATATGCAGCTAGAGATAACAAGACAATAAAAA

a score=14956
s chr3           95804852 888 + 160039680 ATGGCAACCCTCAAGGACCAAGGAAGAACACCAGGTGCCCCAGAACAAG-------ATTACAGTTGCTGGGGTTGGTGCTGTTGG-------------------------------CTG--AAGGACTTGGCGGATGAGCTTGCCCTTGTTGACGTCATGGAAGACGAGCCAAGGGGAGAGACGATGGATCTCCAGCATGGCAGCCTCTTCCTTAAAACACCAAAAACTGTCTCCAGCAAAGACTGTAGTGTGACTGCGAACGCCAAGCTGGTCAACATCACGGCAGGG--CCGTCAGCAAGAGGGAGAGAGCCGACTCAACCTGGTCCAGTAAAACGTGAACATCTTCAAGTTCATCACTGCCAACATCGTGAGGCACAGTCCACACTGCGAGCTGCTGATTGTCTCAAATCCAGTGGGTATCTTGACCTACGTGGCTCGGAAAATCAG------------------------TGGAAGTAGCTGCAATCTGGAATCAGCTCGGTTCCATTACCTGATGGAAGAAAGGC-TGGAGTTCACCCGCTGAGCTGTCTCAGGTGGGTCCTGAGAGAACATGGCGACTCCATTGTGCCTGTGTTTCGTGG---------------TGTCTCCCTGAAGTCTCTGAACCCAGAGCTGGGTAGTGATGCAGATAAGGAGCAGTGGGAGGAGGTTCACAAGCAGGTGGTTGACAGTGCGTATGAGGTGATCAAGCTGAGAGGTTACACATCCTGGGCCATTGGCCTCTCAGTGGCAGACTTGGTCAAGAGCATAATGAACCTTAGGCAGGTGCATCCCATTTCCACCATGATTAAGGGTCTCTATGGAATCAGTGATGATGTGTTCCATGTATCCTGGGACAAAATGGAATCTCGG-----------ATGTTATGACTGAC-TCCTGAGGAAGTAAG---TGGCCTGCCTGAAGAAGAGTGCAGACACCCTCTGGAGAATCCAGAAGAAGCT
s HiC_scaffold_1 44172380 956 - 233722169 ATAGCAACACTGAAGGAAAAACTCATCACACCAGGTGTGGAAGAAGAGGCAGGGGTGCCACAGGTGGTCATGGTAGTGGTGTTGGGGAAGTTGGAATAGTGTGTGCTATCAGCATCCTGGAAAGTCTCTGGCTGATGAGTTATCCCTTGTGGATGTT-TTGAAGATAAACTCAA-------ATGATGGATTGGCAGAATGGAATTGTGTTTCTTCAGACATCTAAAATTGTGGCAGACAAATACTACT------CTGCCAACTCTAAGATTGTGGTTGTCACCACCAGGATTTGTCAGCAGGAAGGGGAGAGTTGGCTCAGTGTGATGCAGAGAAATGTTAATGTCTTCAAGTTCATTATTCCTCACATCATCAGGTGTAGTCCTGACTGCACCATCATTGTGATTTCCATCCCCATGGACATTCTCACATATGCTGCCTGGAAACTAGGTGGATTGCCCAAGCACTGTCTGATTGGAAGCAGATTCAATCTGGATTCTGCTAGATTTTGCTATCTTACATCTGAAAAACTTGGCATTCATCCCAGTGGCTG-CCAGGATGGATTGTGGGAGAACATGGCAACAGCAGTGTGGCTGTCTGGAGTGGAGTGAATATAGCAGATGTTTCCCCCCAGGAACTGAATCTGGAAATGGGCACAGACAATGAGAGTGAAAATTGGAAGGAAGTGTGTAATATGGTAGCAGAAAGTGCCTATGTAGTCATCAGGCTAAAAGATTATACCAACTGGGTCATAGGGTTAAGTGTGGCTAAGCTTGCTGAGTCCATCTTGAATCTATCCAAGGTTCAT-CCAGTGTCATCAC--------ATCACCATGGAG--AATGAAGCCTTCTTGTGCCTGCCCTGCATCATGATTG---CTCAGGGCTTAACCCAACATTATCAATCACAGACTGAAGGATGAAGAGATTGCTCAGCTCCAGAAAAGTGCAGATATGCTGTGGGACATCCAGAAGGACCT

a score=17253
s chr3           95804906 834 + 160039680 AGTTGCTGGGGTTGGTGCTGTTGGC-------TGAAGGACTTGGCGGATGAGCTTGCCCTTGTTGACGTCATGGAAGACGAGCCAAGGGGAGAGACGATGGATCTCCAGCATGGCAGCCTCTTCCTTAAAACACCAAAAACTGTCTCCAGCAAAGACTGTAGTGTGACTGCGAACGCCAAGCTGGTCAACATCACGGCAGGG--CCGTCAGCAAGAGGGAGAGAGCCGACTCAACCTGGTCCAGTAAAACGTGAACATCTTCAAGTTCATCACTGCCAACATCGTGAGGCACAGTCCACACTGCGAGCTGCTGATTGTCTCAAATCCAGTGGGTATCTTGACCTACGTGGCTCGGAAAATCAGTG-----------------------GAAGTAGCTGCAATCTGGAATCAGCTCGGTTCCATTACCTGATGGAAGA-AAGGCTGGAGTTCACCCGCTGAGCTGTCTCAGGTGGGTCCTGAGAGAACATGGCGACTCCATTGTGCCTGT---------------GTTTCGTGGTGTCTCCCTGAAGTCTCTGAACCCAGAGCTGGGTAGTGATGCAGATAAGGAGCAGTGGG-AGGAGGTTCACAAGCAGGTGGTTGACAGTGCGTATGAGGTGATCAAGCTGAGAGGTTACACATCCTGGGCCATTGGCCTCTCAGTGGCAGACTTGGTCAAG---AGCATAATGAACCTTAGGCAGGTGCATCCCATTTCCACCATGATTAAGGGTCTCTATGGAATCAGTGATGATGTGTT----------CCATGTATCC--------TGGGACAAAATGGAATCTCGGATGTTATGACTGACTCCTGAGGAAG--TAAGTGGCCTGCCTGAAGAAGAGTGCAGACACCCTCTGGAGAATCCAGAAGAAGCT
s HiC_scaffold_1  8158044 874 - 233722169 AGTTGGTGTGGCCTGTGCTGTCAGCATCCTGGGAAAGGCTCTGGCTGACAAACATGCTCTTGTGGACATTTTGGAAGATACGCTCCCAGGAGAAATGATGGATCTGCAGCCCGA-AGCTTATTTCTTCAGACATCTGAAATTGTGACTGATAAAGATTGCTGTGTTACTGCCATTTCGAAGACTGTGGTGGCGACTGCAGGCGCCCGTCAGCAGGAAGGGGAGAGTTGGGTCAATCTGGTGCAGAGAAATGTTAGTGTCTTCAAGTTCATTATTCCCC--------AGCTTCAGTCCTTACTGCACCGTCATTGAGGTTTCCAACCCTGTAGATACTCCAACATAGGCTGCCTGGAAACTAAGTGGTTGCCCAAGCACCGTGTGACTAGAAGCCAATGCCACCTGGTTTCTGCTGGATTTTGCTATCTTACGGCTGAGAAAGTTGGCATTCACCCCGGCAGCTGCCATGGATGGATTCTGGGAGAACACGGCGACTCAAGTGTGACTGTCAGGAATAGACTGAAGATAGCAGGTGTTTCCCTCCATGAGCTGAACCCGGAAATGTGCATGAACTGTAATAGTGAAAATTGGGAAGGAAGCACATAAGGTGCTGGTGGAAAGTGCCTACAAAGTCATCAGGCTAA---------------AGGCTATTGGCTCAAGTGTGGCTGATCTTACTGAGTCCATCTTGATGAGTCTGACCCAGATTCATCCAGTGTCAACCATGGTGAAGGG-CTTGGAGGCATCGAGAATGAAGACTTCCTGAGCCTGCCCTGTGTCCTGAGTGCTTGGGGTTAACCAGCATTATTAAT-------CAGAAGCTGAAGGATGACGAGGTTGCTCACCTCAAGAAAAGTACAGGTAGCCTGCGGGACATCCAGAAGAATCT

a score=9722
s chr3            95810888 497 + 160039680 TATCCTTCAAATCTAGCCTGGATACCTGCTACAACATATAGATTACAAATAACGTAAATAGTTAAGGGAAGAGCCACCTTTCAGAAACCAGACCTGCTGAAAGTGGTCCTGGATCTTTGATAAGATAAGTATCATAACCAGAGGTAAGCTGGCCGCCTGAGTT---AGCTCAGTGGTACCACAGACCACAGGACTGGCACCTCAAGATTCTAGGCACAATCCCA-AGCACTTTTA-CTCCACAAAATATATGTGATTACAGCCTGAACTCCCTACCGACCAGCATGCACTCCAAACATTATGTGACCAAGACTTCCTTTTATTATTTACTGTAAATGAACGTCACATTCAGAGAGGCTTT------------------------------------------------TATTTAGTACT-------------------------------------------------CAGCTTAAATATGTTCAACTTGTTTTTCTTATTTCATTAGATTAAAAACAAACA-----TGATTTTCAAAACATTAAATA----------ATTATTTTTATCACAGTGGGGGAATAAAAAAACAAACACTAAAAACTTTCAAGGCT
s HiC_scaffold_1 140998395 579 - 233722169 TATTCTACATGTCTAGCCTACGCATTCactacaaaagata------aaattataaaagtagtGCAAAGAAGAGCTATATTTC-TAAGCAAGGCCTACAGAAAATAGCCCCAGGCTCTC----AGAATAGTCAAACAGCAAAAGACAAGACAGCAGTCTGGGTGTGAAACTCGGGGATA-----------AGCACATGCAC---AAGGCACTGGACCCAATCTCTTAGCATTTCCAACTCCACGAAATGTGTACGATAGCAGACTAAACTGCCTACCAACCAATGTGCACTCCAAATAGTCTGCTACCAAAACT---TGTTATTATTTAATCTAAATGAATCTCACATTTAGACGGGTTTTGTTGTTCTGCTTTTTGAGAttctgggattgaatccagggcacGGTGCATGCTTAGCGTTCTACCTCTGAGCAGCATCCCCAGTCTAGACAGGTTTCTAACACAGTAGACAGCTTAAATATGTCTatactgttttcccttttttattaaa-caaaaacaaataaatgtctaTCATCAGAACATCAAATCTGCCCTAGATATCAGTTTTGCCA-AGTGGG-----aaataacaaaacacaaaaagatttaaaatct

a score=71909
s chr3            95817647 2384 + 160039680 AACAATTCATATTTTAGAAGACCTCTTTTCTGTATTAAAGCAGTGTTGTGGGGAGAACCACACAGGTTGAAAAAAAAAAGTATACTTGAGATGGGGGTTATATCTAAAACAGATAAATATATTTTAAAATTCACATTTCCCATTTTGATTGCCTATGCAAACAAACTCAATTCTGTAAAG-TGTGCTTCAGGAGATTAAAAAGTGGCCGGATATATTTTATA--CTTCGGTACCAATGATGATTACAGTCTCGCAGTT--------------GTGTCTCGTCAGTATCCCGTGGTCTGTATTTTAGTGTTGCAAACACAGGTAAAAGGAAAACAGGTGGTCGCCTCACAGCTCTGTAGAGTTCCTATTGCTTCACAT---TCATCCAGGGAAAGCCTCCTTAA-AACACACGCCAAGTTTCACCCACAGTCATCAAGAGAAGGCCCCTTTCTAGACATATCCCAAGTTTCACGTCGGCGGAAAACACTGCCTGGTCTAACATATTTCAGGGAAGTGG------------ACAGCTTAAACCATGGCTTGACTAGCCAACAGGAAACCCAGAGATCATTAACACGTCAAGGCCTGTAAGAAATAAACGGACGCGACCATTTCCGTGAAGGTTCAGGATAATCAACAACACACCTTCCAGGGCTCGGAAG-GAAACGCGAAAATCTCTACGGGTCTAGGCCCAACGGCCCAAGGTCA-CGCCAAATGTGAGGCTGAAAAATTCCAAGCAATGAGCCCCCTGCAGAGCAGGGCAACCGTGCCTAGGATGGAGTCTGGGCTAGGGAACACTCGCGCCCGATCTTTAATGTGAACCCCAACTGAATGCAGCAGCTCGGTGGGCAAACCCCAGAGTGTTTTGGGGGCCGCATTTTCTCCATC-TCTCCAGCCTCCCCCTTCCTAGTCGCCCCCACACTCACATCTCCGGAGCCACTTCATCCAATGGTAGACGATTGTACTGTGGTGTTTCTTGTTTTCTATACACCAGGACGACAAGCCTTGAATGGATTCCATGGTGTTGGTCACCGACTGGAATTTTCGATCCAACGAAGACTCCAGGGCCCCTGCGGACGAGGCCGACGAGGAGGAGGCCTTACTGCTGCCTCCGCCGCCGCCGGCCGCCATCTTCCCCGGTTTGCACAAGCGCCTCTGGTCCTC--Tggcggcggcggcggcggcggcggcg-----gGAGCGGGCAAAACAATCAGTGCGAGTGCGTGAAAGCAGCAGGAGGGGAGGGCGGCCAGGGGGTGGGGACGCTGCACGCGCTAGGCTCCTCTGGCGGC---AGGAGGGCTAGCTGCTGGGCGCGCTGGCGGCTCCCACACGCTGCGAGGAGGGGCCGCGGCCGCGGAGGACTGTCAGTATGGCTCGGGGGTGGTGTTTAAAC----CGGGAGTCGGGAGACGACTACGGAGGAGACAGAACCTGCGA-----CGGCGCCGACAACTAAGGCTTTTAGCCTCTACGCTCCTCAACTCTTAAGGCCCTTCCCTCATCCCGTTGGCCAAATTCCGGTGAGCCCAGGGCGGCCTTGGTACCGAAGACGAAACGCTACTCCGCCGTCCCTTCGGCTGCAGAGAGCTTT-----GCCTTTAGATTTTCTACCACAGGAAAGGCCCAAAGCTACCTAGGCAGAAAAttttctttctttttttttttttcttttcttttttttttttttcttttttcttttttttttttttttttGCAACGCAATAGCAGCAATAGACCAGCAGAAGAAATGCGCACGCGCACGGAAGCCCCGCCCCTCCGCTTCCTCCTCAATCTTGAGCACGGGGGCCGAGGGGGCGTGATGGCGCTGCGATTCGACCAATCAGGGAAGGGGGTCGGAGAAGCGCGT-CGGGA----------CCTGAAGGCGGAGGAGGCGCTGCGTCTCTCTGTGCGCCTGCGCGTTAGGTCTGCGCCTAGCGGGTTGGGAGG-AAAACCTGGGGAGGC---AGGATTGAGGCGCTCCGGAGCCTAGGACGTTACTAGACCCCAGTTCAGTGCTCGGCCCTGCTTT-TGGCTTCATGGCGGGGTTGC-TCCCTGGGAGCCTTT-AATTCAC--ACTAGGATG--GGAAATGCCCACCGTTCTGTGGCTACTGTTTTTGACAGCTGCAGCTGCGTTCCCTGCCACCCCGCCATCGGGGACCTACACGCGACAAAATGGCTGGCA--CGTCTTGCGGAGTGGGGGAAGACGCGCATGCGTCAGGCCCTGTTAGCTGTTCTCTAGGCACTCCTTGACTAACCTATGCTACACGCCCGACTGCGATGACACCGTTCACAGCCAGCCGACCGACTGCATTCTAGAAAGAGGGAATAAAAGTTAAACGAAAATTTCTCTGAAAAGTCTTCGAAGCGAGGAAAGAGTAATTGACAAGGTGTGGCTTC---TTTGCTAGGTA----GTAACATCACAATTTCGTAATGCGT
s HiC_scaffold_1 141003885 2254 - 233722169 aacAATCCATGTTTTAGTAGAC-----TTCTGTAATAAGGCAACAAAGGGGGGGAGGC---ATgggattaaagaaaaaagtat------------------------------tacata-gctttaaaaagcacattttctgttttggctACCTATGAAATCCAACTTAATTCTGTAAAAACGTACCTCTGTCGATTAAAAAGTAGCCAGATATGTTTTATGTGCTAAGGTATTAATGATGATCAGAGTACAACATTTCAGGTATTAATGATGTTTCTGGTCAGGATCAAA-AGTCTGCACTTTACTGCAGCAAGCATAAGAAAAGGGAAA------------CTAAGATCTATGTAGTGTTCATGCTGCTTTATATGGCTAATCCTGGCAAATCCTGCTTCACAacacatcacaagttttagaaaCATTTCTCCAGACCTGGGTCTCCTAATACCACACCGCAAGTTTCAGGTCAGTGAAAACTACAAC--AGCCCAACCTTTGCCAATGAGGCAGGCGGACTTAACCACTGCTTTACCCACAGCTTGTCCA-CCATCAGGTAAAGCAG-GATCATTAACACGTCCAGGCCTGTAGGAAATCAACGGACGCCGCAATCGCCGTGAAGGGTCAGTACGATCAGGAACACACCTTAGAGGGCTGTGAAGTGAAACACGGAAATCCAGACGGACTCGGGCCCAACGGCCCAAGGTCAGCGCCAGGCAC-CGGCT--AAAACCCCAAGAACCGAGCAATCTG-------GGACCACCGGGCTGGGAATGAAGTCTGG-CTGGGGGCC--TCGGGCCC-------------AGCTCCAGCGGGAACCACCCGCGCCGAGAGCTGGCCCCCGCGCGT---AGGGCCCGACTGTCCTCCCGCGTCCCCAGCCTTCCCCGACCTGGACGCCCA-ACACTCACATCTCCGCAGCCACTTCATCCAGTGGTACACGATGGTGCTGTGGTGTTTCTTGTTCTCTATACACCAGGACGACAGGCCTTGAATGGATTCCATCGTGTTGGTTACAGACTGGAACTTTCGATCCAGCGAGGACTCCAGAGCCCCTGCCGAAGAGGCCGACGAGGAGGAGGCCTTGCTGCTGCTT----CGCCGCCGGCCGCCATCTT-CCCGGTTTGCACAAGCGCTGCTGCTCctcggcggcggcggcggcggcggcggcggcggcggcggcgcggACAAAACAATCCCTGCGAGTGCGGGG----CGCCGGGCGGGAGGGC-----GCGGGTGGGG-CGCGCCACGCGCTGGGCTCTCCCGAAGGCGCGGGGAAGACCCGCTGCTAGGCGTGCTGGCGGCTCCTACGCGCTGCGAGGAGGGGCTGCG--------GGTTTATCAATACTGTTCAGGGGTCGTGTTTAAACCAGTCAGTAGTAAGGGTAGAATTACGCACAAAGTAGGACCTGCAAATGCCTGCCGCCGAAACGAATGGTTTTTATACTCTTAAGCTATCAGCGCTAAAG-----CCCATCAACCCAATACCCACATTCCTGTAAGCCACGGCGGGTGTTAATATCTTAAATTTAATACTACCCGACTGCCCCTTCAGTTGCAGAGATCTTTCTCTGTCCTTTAGA--GTCTACCACAGAAAAGGTCCAAGGCGACCTACTcaagg---------------------------------------------------cttttttttctttttttttgcaacGCAACAGCAGTAAGAGAACTGCAACAGCATCGCGCATGCGCGGTTTGGCCCCGCCTGCCCACTTCCTTCTCAACCTTG----CAGTATTAAGGGAGGAGTGATGGCGGGGCAATCTGACCAATCA-AGAGCTGTATCCGAGAAGCGCGCGCAGGAGCCGGCAAACCCAGAGGGCCAAGCAGGCCTTGCGATTCTTTGTGCGCCTGCGCAGCTATTTAGCGAGAGGAGGGCTGAGAGGCAGGATCTGTGAAGGCGaaagagttgaaggg-----------aggggatcA--AGGTTCC--TCCGGCGCTGTGCCCCGCGTCATGTTTTGCTGGCAGTGAGGCATCTCTTAGAGTTGTTAAACtcacaaaacaagatggtggaaATTCCCACCATTCATGGGCCAATGTTTCCGGCGGCTAAAGCCG------CTGCCA--CGGGTAACGAGTACGGACGCACGACAAAATGGCTGACAGCCATTTTACAGCGCCACAAAAAGTGCGCGTGCGCCTGGTCC-GGTAGCTGTTTACTACACA------GGTTTCCCCGT------CACACGACTGCGCGCTCACT-TTGGCAGCTAGCCAACCAGTTGGATtataggagaaggaaa------------aaaagttttcACGTAAAATTTTCGAGGCGAGAGGAAAGTAATTGGCAAAACATGACCTCACTTTCGCAAGTTATAATGAAATCTCACAAAGATGTAACACAT

a score=8030
s chr3            95821606 363 + 160039680 AATAAATCTTGTTTTAA-ATTTTACAACACTTTTAAAGACCTTAATGATCCTACAATCAAG-----TTCTCATTCTCTGCAATGAACATTCTGATGAGCTGAATGGA--AGTTTGGTATTCCAAATAGAAAAGAGCTGTGGAAAGAAGGAACAACTAAC----------------AGCAGATTGTTTTCAAGTTATTTTCCTTCCAAGGTTAAAAGCAG----GACTTCCTTATCATACCAGCTGAAAATGACCTGCTTGGAGATTTCACTCTTACCTCTT--TACTGGTTTCTTGGGAGATTAAAATAAACA----AGTTTCACTTGATCACGTAGGCCTTTA---------ATGTGACTCCATTTTGAT---TTGGTTGAGCAAT--------AGCCAG---CCTTCGGTAAATTCTA
s HiC_scaffold_1 110440326 404 - 233722169 aataaatttaaatgtaagatCTTAATTGGCTCTTA------TTTGTGATTCTAGAATCAGACAAGTTTctcattctattt------tgttctgatGAATTGACCAGAGGAGGTTGGCTTTCTACACAGAAGAGAGCTTAGGAGAGCAGAAACAGCTAACTAACTACAACAACAGAAGCAGATTGGTTGT--GTTACTTTCCACATAAAGGTTAAAGCAGAGGAGATTTCCTTATCATGCTGGGTAAAACTGGCCTGGTTAGAGATTTTGCTATTACCTCTTTCTCTTGATTTCTTGGAGG--TTAGATAAATACCATGGTTTTGGCTTAGGATATGAAACTTCAGCATAAGAGATGTCACTTCGGTCTGGTCTGTTGGTTTAGAAAGTCACTCTAAACCAGTGActttctataaatttta

a score=22575
s chr3            95830615 389 + 160039680 AATTTTAAAAATAACTCTTTAATCATATGCACATACAGGA-TGGAGGGTAGCACCAGGCTGACTGGGTG----AACTTGGTAGTCTT--TTTGCCCTGGTATCGGCCTGGCACAGTTCTGAGATCACACGCACGGTGGGGTAAGGTTGGGAAGTAGAGT---GAGAAGACAGAAGAAACAAAGGCAAAGAAGATACAAGGGCTAACAGTAGTCT----CAGTCGGTGGACTCCAACACAGATTCACTCAGTGCAAGGTCCCAGTAGTGTTCAGCCCCATGCTTTTTGAAATGCTCACGAGCCATGTTCTCTGTAGGGCACTGTTTAAACTTCATCTCTCCAAAGCTCCGGTCTTTGGCTGTACCCTAGGTAAGAAGTGA-------AAATTGTATTTATTTACTTATTTG
s HiC_scaffold_1 141011620 409 - 233722169 aatcttaaaaataactcTTTAATCATATGCACATAGGGGAATAAAGGAAAGCACCAAGCTGACTGGGGGTGAGAGCAAGGTTTTCTCCCTTTGTCCCAACATCTGCTTGGCACAGGTCTGAGATTACACATGAGTTCAAGTG-GATTGTAAAGTACAGTAGGGAGAGGACCGACGAGAGAAGTAAAGGGGAGAGGCAAGGGCTTGCAGTAGTCTGTCTCAGTCAGTGGACTCCAACACAGATTCACTCAGTGCGAGGTCCCAGTAGTGTTCAGCCCCATGCTTTTTGAAATGCTCACGAGCCATGTTCTCTGTAGGGCACTGTTTAAACTTCATCTCTCCAAAGCTCCGGTCTTTGGCTGTACCCTaagaaacaaataatgaaaacaacttacatttctttttttctttg

a score=7688
s chr3            95832527 123 + 160039680 AACTGAACTGCAGCGTTTTACAGAGA--CACTAACCTCCCATACTAGTACACATTTGTTAGTTTTCTTCACAGCTTCTTCATCAGATTCCTCATCATCTGGAAAAGACAAAAAAAGCTCAATATT
s HiC_scaffold_1 141013872 124 - 233722169 AGTTGTACTTTAGTGTTTTACAAAGTATCACCTACCTCCCAGACTAGTACACATTTGTTAGTTTTCTTCACAGCTTCCTCATCAGATTCCTCATCATCTGGAAAAGAT-AATATAGCTAAATCTT

a score=38161
s chr3            95833636 1281 + 160039680 TCTGTCTAAACTTCTTGAAC--------------ACAAGACTATTCCAGGAAGAATGGATGAAGAATAGACAGA---ACTATCACTCCACCTCCCCCAGCTCTCCCATGTAATCCCTTCTAACCCCAATTCACCATCTCCCTTCGTGTTAGATGTCTGCTCATCCCACTTTATCCGATGTAGCATGAGACGCTTAAATTTCTTCTGGGCTTTGGGGCCTGAAAA-----GAGAATTTTGC---GAGTTGGAAAGATGACAGAGTAGGAAGAACCTCTGAGCTGAGCCCATCTACTACTCAGATAGCAATGGGAAGG--GGAACGAGCCCCAGGACCAGGACAGACTTCTTCTGCAG----ACACACAGAATCGGA-------AACACAACAGCG------------GTCTCACAGAAATCTTCCTCCCTTCTCCCCACTGCCAATCGCTTTAGGGCTAGGGTTGTCTAGAG------AGTTTCCCTCAAC-TCTCTGCACTCACCCCCTTCCACTACCACCACGTTGACATCTTTGTGCAGCACCACCACCCCTGTCAGGTACAGCTGCCCAGCATTGGCCTCAATCTTGAACTTCTTGGCTGGGTTGCTCAAATTTCGAACTCTGGAGGAGGGAAACTTTAGTCATGTCTTCAGTTTTATCACTAGAAGCTGCCTGAATGGAATGGCAAAT--ACAGA-GGATCTAAAATCAAGACCTCTGGAATGCAGTTATATttttattctcttgtaaatacagggtctcatcatgtagtctggct----ggcctgg--aactcactgcatagacca---atctggccttgaactcgag---------agatttgactgcctctgcctcc-----------ctttgctg-------------gtcttataCTTCTTC--------------------------ACAGTAAGTAGTTAGAATCTAT---GAATGAAGGAGAGGT--ACTATCATCCAAAAAAGCTTGCAAGCCCAGTGTTCCAGAAGGTAGAAAAAGCTTTAAATCCTGCCACCTCTAGATGCCTATAGTATAGATGCCATGTATTCA-AAAAAATTTCTGGAGACATCAAAAACTGTAAATAGTAGTTACCTATAGATAGTATCTTAATAGATCAGAGAATAGGAAGGGGACTCTTTCAGGAAGTGCTCCTCTATTATTATTAGAATTTGtcttgttttccagtttgggatagccaaaaacttgctacgtggttcaggttagccataaactcagaactgtcctgttcctcctgtgtgctggaattacaggcatgcatcatcctatctggtccaaaaattttaatCTGAATAAACAGAAG----TTTTATTATAATGTGCCACTTC--TGATAAAGAACTATTTAGTAGAAATAAGTGTATCTAAAAA
s HiC_scaffold_1 141016805 1338 - 233722169 TCTTCCTAAAGTTCCTAAACTCTATCTCATGTTAGCAGAAGTGTTACAAGAAGGGAGTAAAATGAAT-GACAGAGGCACTGTC--CCCACCTCCCACAGCCCTCCCACTTCATCCCCTCTAACCCCCATTCACCATCTCCCTTCGTGTTAGAGGTCTGTTCATCCCACTTTATCCGATGCAGCATAAGACGCTTAAATTTCTTCTGGGCCTTGGGGCCTGGAAACAGAGGAGAATTTTGCCAGAAGTATGGAAGACATTGGGGTAGAAAGGACCTCTGAGCT-----TATCTAATGCTCAGACAGTAGTGTGCTAGTTGAAACAATCCCAGGAATCACATCTGTATTCTCCTATTGTAATAAACACACAAACAGAGCCCCAGAACATTATATCGCATCTAAGTATGGTCTAAAATATACTTTACTCTTTTCTCCACAATGCAAATCACT--AGGCTTAGGGTTATAGTGAGGGGGCTAGTTTCCCTCAGCGTCTTCAGACTCACCCCCTTCCACTACTACCACGTTGACATCCTTGTGCAGTACCACCACCCCTGTCAGGTACAGCTGCCCAGCATTGGCCTCAATCTTGAACTTCTTGGCTGGGTTGCTCAAATTTCGAACTCTAGAGAAGGGAAAGTTTAGTTATGTCTTCAATGTTAGTATCAGTAACTGTCTGAAAAGAGTGGCAACTAAACAGATGAATCTAAAat-----------------ggtt---------ttctctttaaaaacaaaggcCTTacctgggggtatagctcagaggcacaggcaactgcctggcaaggtcaaggacctgtgtttgatccccagtaccagataaaattaaaccccccccccccacacacacaaaggctCTGTGGAGCAAACAAATCTATTTCCTATTTCTTCAAAGTGTAGCAGTACATCTTAAGTCAAAAGTAGGTAatcaaaatttacaaagaatGAGACAGGAATTCACTATCATCTAAAAGTACTTATAAGCTCACAGCTCCTG-----ATAAGGACCTAGACATTCTTTGCTTCCTAGAAGTCCATAATGTCATTATTATGTATGCATGAAAATTTTCTAGAAAGATGAAAAACTATTACTAGGAATTATCC----ATAGTGTCCTAAAATATCAAACACTAGGAATGGGACTCTT--GGTAAACGTCCTTCTA-Cagtgttagaattttttttctttttcattataagg-aactgaa------ctcagggcctcaagcttgccaggcaggca-----------------ctgtgccactgagctata-----tcaccagccctttt-----aaaatatttaattttaataagcaTTCGCTACTTTTGTAGTTATATACTACTTTTATGACAAACAACTAGTTAACAGaaataagca-atttaaaaa

a score=31268
s chr3            95835340 459 + 160039680 TGTGGACACCTACCTATACACAGATATGTGCACCCCCTGTGAAATGTCTTCTTTAAGCTTTTTAATTTTCTTGACCTTTCTCTGTTCTGCTGTAAGTTTTCGGGCCGCGTTGGCCTCTTCATGCGCTCTGTCGTGACAGGAAGGACATCCACAAGTGAGAAAGGCATTGCCGATCAGAGGCAGGGCTAAGGGAAAGAGAGAGCAACAGAGGACTCTCTCCTC--CCTCCAATACCAACCCCAGGAGGGTCTGGAAAGGTA-GTGTCCTGGGCTCTGCCCTATCCCACCCTACCGCACCCCACTTACTTCTGTCTCTTTGCCATCTGAGCTCTGACATGGGCTTCTACCTTTGTAGGGTCTTGAACTGCTTCTGTTCCTAATACTCGCATTAAATTTGAGATTCTCACTACAATGGAAAGAAAGCAGCAATCAATCTCCTAATCTCTTAAATTACTTCTCTAG
s HiC_scaffold_1 141019163 442 - 233722169 TATGGACACCTACCTATATACAGAAATGTGTACCCCCTGTGAAATGTCTTCTttaagctttttaattttcttgaccTTTCTTTGTTCTGCTGTAAGTTTTCGGGCAGCGTTGGCCTCTTCATGAGCTCTGTCGTGACAGGAAGGACATCCACAAGTGAGAAAGGCATTGAAGATCAGAGGCAGGGCTAAGGGAAAGAGAGAGCAACGGAGgactctcccctcctctcccaaTATGGATCCC---CCAGTTGGAAAAGGCACATGTCCTGGGT---------TTCCACCCAATCCCATGGCACTTACTTCTGTCTTTTAGCCATCTGAGCTCTGACATGGGCTTCTACCTTCGTGGGATCTTGAACAGCTTCTGTTCCTAATACTCGCATCAAATTCGAAATTCTCACTGCAACGGAAAGAACATAGTACTCAATCTCC--------TAAATTACTTCTCTGG

a score=21972
s chr3            95836303 1135 + 160039680 AAAAAAATCCTGTAAATGATTCAGAAAAACC---ATCAAAGACATTAAAGTGCCTTTATAA---GACAGACTGACTGACTCACTCACTCTATGGTAGCAGG-CCAGC--AGGCACATACCTTTGGGCTCTGGAGGAGGTGTCAGGCCTAGCCTGACTTTCTCTTGTAGCTCTTTCTGTGCTTCCCTTCTTGTTTGCCTCCGTAGTTTCTTCTGCTCCTTCTTCGTAAGATATACCCCAAGGGTAACTGGTGTATCATTGTCAACTGTTAAAAAGAAAAATGAGT-TACCAAAGCATAAA---TTATAGAGGGATTTAGGTGAGTATGCATCAC-TTAGAAAAACCATCAACTAAAATCTGAGGGAGGAGGTCGAGAGACAGTCGTGCTTTGTAGCTCAGACTGGCCTATTGCTTCCACCTCAAAACTGCTGAAATCACCTGCATCCACTAACTGTGCTTGACCTAtttggttttgttttgttttgttttgt-tttttcaagacagggtttctctgtgtagtcctggctgtcctggaactcactctgtagaccaggctggcctcaaactcaga--aatccacctgcctctgcctcccgagtgctgggattaaaggcgtgcaccatcacgcctggctATT-----------------------------TGTTATTTTTAAGTGGTGAGACTGATAGTATAATT----TTT---------TTTACTAAGTGAAAGTATTATGGCTCATAAATGTTTTTTCTTTAAGAAGTTGTTCACTTTC--------------AGCAAATGCAAA-------------------CAGTAGCACTGGCTAAGAATCTGAGGAAG---TAAAAGAATC-CAGAACTCCACTTGGGTCCTACTTTCTATAATTTGCTGCTTCTATGGAATACA-ATTTGAAATTCCCTAACCTACATAACAATAAATTTTGCGTCGGCAATGCAGCTATGCTAACTACTGTACAACCTCTGCGCTCAATTTCAGTACTAGGAAATGGAGGAAACCCTCTGGAAGAAGCTggctggagatggtgcagtggttaagaatacttactgctagcc-gggcgtg------gtggcgcacgcctttaatcccagcactcgggaggcaga-ggcaggcagatt--tctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaacaaaaaa
s HiC_scaffold_1 141020720 1043 - 233722169 aaaaaaaagaagaaaaagaaacagaaaacactgGAAGAGAGATGTTAAGGTTCTTCTAGAATTTATTAAAGGAAGCAAGCTACTATCTTTTTAGTAGCAGGGCCAACTAAGACATGTACCTTTGGGTTCTGGAGGAGGCATCAGTCCCAGCCTGACTTTCTCTTGTAGTTCCTTCTGTGCTTCCCTCCGCGTTTGCCTTCGAagtttcttctgttccttcttggTAAGATAAACTCCCAGAGTAACTGGTGTGTCATTGTCAACTGtcataaagagaaacaaatatcTCAAAAGAGGAAGACTATTGGAAAAACTTAGGTGAGCA-GCATCACATTTAAAAGACCTgcagctgaatttt---------------------------------------------------------------------------------------------------------------ttttttttttttctctttggtctcttttgagacaaagtttcactatacagttcatgctggccttgaagtcactctgtagcccaggttggctctgaactcaaagtgatcttcctgccaaAGCCTCCTAAGTGCT----CAACAGTTATGTGC---CACatccagctgtttttttttttttttttttggtttttatagctgTTATTTTTAACTTGTAATAGGGGTCATATGattacactttttaaaagcattcattaagtggtattgtta--------------tttttgttcaaCTAGTTAAATTCTTTCATCAAATGAAATATAGCAAATGCAGAAAACTAATTAGGCCCGTTCTAGTTGCTCTGTGTGAGAATGTAGTGTAGCATTAAAAGGATTGGGGGAACCTATTAAGAGCCTATCTTTTGTATGTAAATGTTTCTCTGGAATACACCTTCAAAAATCACTGGCCTAGAcaataatg----------------------------------tttataattttgg-----------AGTCCcagggaatgggaaaaatattctCGA-----CAAGCAGAAGAggtttaatt-------aataattaaaaccAGCCAGAGTGTGAATTATGTGAATCaag---------ccagcatttgggaggctgagggcaagaggattgccctgagtttgaggccagcctgggttatacagtgagttcaaggccagcctgcactacagagtaacaccttgtctcaaaaataaaataa

a score=12297
s chr3            95840532 430 + 160039680 aaaaaacaaaaAAACAAAAACAAACAAACAAAAAAATCACCTGTGGCTATAGGTTGGAAAGCACAGACAGAAAGCTCATGCATTCTGTGGCTAATGCTGCGTGATCTAGAACCTTAGTTGGATAATCTGTACATTACCTGGAGGATTAAGCTGGGCTGGATGTTCAACAAGATTTGTGATTCCAAAATAATCTTCTCTCTTGGGATTTTCCTCTGTACTAAAATTGGAGGAAGAAGAGAAAACAAGATATGTGGGTAGAGATGATATAAAAAATAGCCTAGACAACAAACAACCAAACAGAATAGTTTAGAAACATAATGAAAAAATATCCATTTTCTATC---TGTTCTACTATATTATGTACTACCTATATCATTTACTTAGGTTACACATAACTTTCCAAACAAGAA------GTCTCATGAAACTTGCACATGTT
s HiC_scaffold_1 141023456 356 - 233722169 aaaaaaaaaaagaaaaaaaaaaaaaagaaaaagaaa---------------------aaaagaaagaaagaaaa-------attcta-------------actATCTAAAGCCTT----GAGTAATCTGTACATTACCTGGAGGATTGAGCTGAGCTGGATGTTCGACAAGATTTGTGATTCCGAAATAATCTTCTCTTTTAGGATTTTCCTCTGTACTAAAATTGGAGGAAGGAGAAACAACAGGATATGTGGGCTATGTGGGTAGAAATGAT------GCCAACAGAGAACT-CGCAGAAAATCCCAA-------------------CCATTCTCTATAAtgtgttttaatgtttt------------tagCAGTTACTTATCTTTAATATCATTTTTAGGGTGAGAAAACTGTGTCCCACTAAAGCTGCATGCATT

a score=41729
s chr3            95844179 1149 + 160039680 ACTCACAGGTCAAAGCCGTTGGGTATGATGTACGAGTCCCACCACTCAATCTCAGGGATATCGCCTTCCTTTAGCTCCTTTTTGGGAGCAATGAGGGCAAGTCTAGTCGAAGTATGAATGCCTGTTTTTCTAGCAGCTTGTGAAATCTCTGCTTGCAGCTTCTCCAATTGAGCCTAAGAGCAAGATCAAACAAGATAGGAAGGTAAGTTGGAGCAAAGGAAAGTTGTCGAGTTACAAATTTAATAACAAATTTAACCCTTATTAAATTCTAATACCTAATGTAATGAATTCACAACTTCTAAAGGATTTGAAAGATAAA------CTGCCTTATTTTTTACGCAGTTTACTTAGTCCTCTGACTCTTGTCTCTCCT--TTCACTC---------ATACTGTAGATATACATTAGTGGGATTCTACGAAAACCTCATTCTGA----------GAAGACAAAAGG--GACTATTTAATT----------------------------------------------------------------------------------------------------------AACT--------ACATTCAATCCAACTCTCCCAAGCACGTAGATTTTCTGTAGTAAATTCTAACATCAGGTTATCATTCATCAAAAGAAGTCAGGAAACTGGCTTTGAACTGTTTTCCTCAACTGTTGGTCAATGGGGAGTGCTCTATACAAGCAGAAAGCAGTCAGGAAGAGAAACCGAGTAAACAATAAATAGTCTAAGAATA----TAGCACTTAAACCAATTACACTGTTTTAAATTATGTTT--CTATTTCCCAAAAATATGGACCTAAA-----AGTGTCTT----TGTGTCAGCTTCTGAG---CTTCTAAATT-----------------------ACCTTTGTCCGTAATCGTTGAGCAATTTTCTCAAATTTGCCCTTGTCATGGAATTTAAAAGTGCGTCTTTGGCGCTGGGAAGGGGCAATTGAGACTCGGGGGTCAAAAAAGGTATTAGACTCCATGTCTTCTGATGGCTTTTCTTTTAGCTGCTGCTTGAACTGTTCCCTCTTCACAGCCCGAATGTTTGCCTTCAGGGTGGGCATGCGATGTGTGAGCTCCACCTCCTTGCCTGTCGCATCCACAGTGCGGCCTTGCTCGTCCAGGATCAATGGGGTAGGCTTAGTTTGGTCTTTTAACTCTACTTTCCTGAAAAAACAAAACATCCCTCAGAGAAATAAATCCTACATAGAACCTTGAAGCAAGGAAAACCCAACAGAAAACAAAAGGAGTCAAAATTATCAAA
s HiC_scaffold_1 141024202 1258 - 233722169 ACTCACAGATCAAAGCCATTGGGTATGATGTAAGAGTCCCACCACTCAATTTCTGGAATATCTCCTTCCTTAAGCTCTTTCTTAGGAGCAATGAGAGCAAGCCTAGTTGAAGCATGAATGCCTGTTTTTCGAGCGGCCTGTGAAATCTCTGCCTGCAGCTTCTCCAGTTGAGCCTAA-----AGACAAACCAAGA------GATACCT------------AATTGGTAGAACCCCAAATTTTATAA------TACCTCTTATTGAACTTTAC------ATGTAATATAAGTTCAATTGATGAAAGTTTAGGAAAAAAGAggcattctgctttattttatccTTTACTTACATA--CATCTCACCCCTATCACTTCCACTTTACCCTGTGTCTGCCTATAGCAGATatgcagaaataaaattcaatgaaatcctACTttggaagaacaaaaagaaggcaaagggctggggatttagctcagcggcataagcgcctgccttgtaagcaggcagtcatgagttcgatccctggtaccgaaaaaacgaaaaagacaaaaaaaaaaaaaaaaaaaagaaggcaaaacaaaCTGTATATATACAATCAAGTCAACTATCC-AGGTGCGTAGATG----GCAGCAAAT---AACACCAGGCTAGTTTTTCTTA------GTCACTCAAAAAGTTATAAATTGTTTCTCTCCACTGTCAGTGTAggtgaaaaatttca---------aattcaattAGGAAGAGAAATC-AGCAAAAATCAAGTATTTCAGGAATAAATATAGTGTTTAAA---AATACCTGCTTTGAATTTCTGTTTAGCTAACTCCCCAAAATA--GAACTAAATTCATAGTACTTTCCTGTCTGTCAGCCTCCTAATGTCTTCTAAATTCTGGGTTATATTCTAAGTCAGGTACCTTTGTCCGTAATCGTTGAGCAATCTTCTCAAATTTACCCTTGTCATGAAATTTAAAAGTGCGTCTCTGGCGCTGTGAAGGGGCAATCGAGACACGGGGATCAAAAAAAGTATTGGACTCCATGTCTTCTGATGGCTTTTCTTTGAGCTGCTGCTTGAACTGTTCCCTTTTCACAGCACGAATATTAGCCTTCAGTGTAGGCATGCGATGTGTCAGCTCAATCTCCTTGCCTGTTGCATCTACAGTACGACCTTGCTCATCTAGGATCAGGGGTGTAGGTTTCGTTTGATCTTTTAGTTCTACTTTCCTG-AAAAATAGACCAC------AAAAAAGAATTTCTACAAGGAACAATAACGCAagaaaacaactagaaaaaaaaaatgaaat--aaatttttaaa

a score=33830
s chr3            95847251 792 + 160039680 acataaaataaataa--aataaatacgtct-----tttaaaaaaa---aGTTAGTAATATTCAAGTAAATTACCTTTAAATAACTACCCCAGAACTTTTAGAAGTGATATGGGACTGTGTGAA-AGATACTCACGGTGGAGCTATGCCCATGGCATGGAGATTAGCTAGGCCCACCATGTTGGCATTGCCAATAAGCCCTGGCTTCAACGCCAGCTGGGCCTGGATTCGGGCTTGCAGCTCGGCAGCTTTCCTCGCCTTCTCAATGGCATCGTTCATAAAGGTAGCGGCCTGGGAGGGCTGAATAGTGTTGCCGATGGGAAGTCGCTCTGGTTGGGAAGAAGAAGGTGTCTTTGGCTATAAGACAAGAGATTAAAAGAAATCAGAGAGTGTGTGATAGGC----------ATACAGATACATACACAGCATGGCAGATTATGGTGGACAACTG-----GAGCCCTTTCCGGCCTCTCATGTGGATGAATGACAACAACCTTGTGCTAACTCTTCTTTTCCGAGCAATCAGG-CACCATACCTGAGGTGCAGGGGGGCTGATGAAGCTCAGCTGTTTTTTCCGTTCCTCGATTTGTCGTGTTGCTGCTTCCATCATCTGTTTGATCTGTTCTCCAGAGGGAAAAGGTGGAAAAG--ATTATTTCCTCCCATAAATGTTCCTAAATTAAAAAGCATTCAGTTCTAGAGACCTAAAAGATTGTGAATGTCTCCACAATAAATATATTATCTATAC-CATAGACAAGAAAATTTGCTAAAGATAAGCCTATACCCTTAAGCACTAGAATTTTTCAATCTTTTCCCC
s HiC_scaffold_1 141026121 782 - 233722169 ACATAAAATATGAAACTAAGAGATACTTTTGATGCTCTGAAAAAACAGAATCAGTAACATTCAAAGA---TACTT-------ATTACTTCTCAAGCTTCAAATATGACAAAAGATAGCATGAATCTATACTTACGGGGGAGCAATGCCCATTGCATGGAGATTAGCTAGGCCTACCATATTGGCATTGCCAATGAGGCCTGGCTTCAGTGCCAGTTGGGCCTGGATACGGGCTTGTAGTTCAGCTGCTTTCCTTGCCTTTTCGATGGCATCATTCATAAAAGTAGCAGCTTGGGAAGGCTGAATAGTGTTGCCTATTGGAAGTCGCTCTGGCTGGGATGAAGAAGGAGTCTTTGGCTGTCAGAT---------AAAGAAGTCAAAGGGATTGAAATAGGCAGATAGCTCTATGCAAACACATACACCCCAT-GCAGACTATGGTACACGACTGTGGAAGGGACCTTT-TGAACTCTCATTTGAATGAATGGCAAGAGAC--ATGCTAA-----------AGAGTATTGTGACCACAGTACCTGAGGAGCTGGGGGGCTAATGAAGCTCAgctgttttttcctctcttctatttGTCGGGTTGCTGCTTCCATCATCTGTTTAATCTATTTTCCAGGTAGGAAAAATTGAACAGGTGTTAATTTCTCCAACCCAGGTTGCTAAAGCAGAATGCTCTTAGGTCTAGAAACCTAAAACTTCCCATATGACTCC------AACATACTCTTCCTGCACACAGACTAAAAAATATAGTAAAGACAAGCCTACAAAGCTGAGCACTAGAACCtttcaactttcttttc

a score=82373
s chr3            95848654 1692 + 160039680 TCAAGCTAAGTGCT-ATCATTTCATTTCATTTTCCAACATTGA-----TGAGGCAGACAACTGGGCAAACGATGAAGTA-------------ACACACTAGGTGCTCAATAAATACAGTGTCAATAATCCTTAGCTGGGCTACTTCTGATCAAACCAAAGACTGCTAAAATATAAAGGAAAAAGTAAAACTTCCTCAAATGGTTAACACAAACTCAAATCATGATCACTGTGAGCCTGGTGCCA--------------CAACTCACAAAATCCCTTTGCTTCTTTT-------AACTAACCTGGAGCTTTGTTAGCATGCCAGGGCTTTCTGATGGAGGTCCAGGGATCACCTCTGGCTCCTCTTCTACCTCCTCAAAACGGGGTATCCGCCGCTTCTTTACCCCCGATGATTCCTTTGAGATCTCAGAGTCATCACCAAACACCTCCTAAAGGAACCCAAGATGAAAGAAGAATTGCACCCCT--CCCTAGGG-GAAAGGAACAACCATCCCAACCC-TACCAGCATCCTGTGGTTTCCC--AGGGGATATGA--CAACCTTTCAAATAACTACTTGCAAGAAGCAGGGTCT-CTAGATACTCCTCCAAGTGGACCATCTCACCCAACTTCATCATTCT-CTTACCCCACTCAAGCAAATTTCATTCCCATGTTCTGATAAGTTTtcccatctcaagatctttgccagtgctactgcctacatttgtaatgctcttcctc---cttccca------------caaatcctgtctaaaactcacctcctccaggaagttctccTCATCATCTCATC--CCACTCTGATCCAACTGTTCTTTCACATCCTCTCAGCACTTA-GAGCTCGGCTCATATTAGACCACATTATACTGCTGACACTGTTTGCCACGTGTTAGGT------------AGACTTTCTCCCAATTAAAATCTAAGTTCTTCCAGAAAAGAGGCTTGTTCTTGTTTAGTATTCCCCAATAACATTTTCTTCTTATCATACAATGGGAACTCAAATATGTTGACTAATTTGCAAAATGAATTTAATAGGACCAAGAGTGGCCAACTGGAAGGGACAATGGGAAAAAGCAAATGTACACACCGGTGGTAGGCTTTGGGTGACATCCCCTCTTCACTAGGAGGGCTCGTGTTTTGCAAGGACATATCCTCAGCCAGGGGCGAGCGCTTCCTGGAACTCCTACAGTTCAAGAAAAAGGACTCTCCCATAATATATTGTGTGGAGTGGGGACTTGAATGGACCAAAAATGGGACCCATATCCCAT-GCTATCTAGATATCTCCCTCAAGAAACCATTCCTACTATCCCACCCCATGTAGTTAGTCCATTCACAGCCTGAGCTTGG--CCTTCACAGCAGCATGTACTATTGTAACACAACCCTCACTGTGTTGATCTGTACAGTACGTGTCTAATCCTCTCCTCTTAAGT--------TTAACACAAGTCTGAAATTCTGTAACCAGTTGCAAATGTATACAAAACTGCTACTCACATTTTGTAACCTGTGAC--TGATTTCTTGCAACTCCTCACTCCT---AAATATCAAACTACTT-AAGTCAAGAACTAAGTCTGCTTTCTCTGATCACTCTATAATGTTCAAAAAACAAAAGGGATAGGAATTTCTATTTTTCTTGGTCATATAGCATGGCTACAGACCCCAAGCAGACACTGCTT---CTTTTTTTGTGTGTATCTCAGGAAAAGCAACTGATATGCAAGGTATC-AAAAGCACTTTAGa--gctgggtatga
s HiC_scaffold_1 141029412 1744 - 233722169 TCAAGCTGAATTCTGATCATTTCAGTTCATTTTCC--CAATGACCCAATGAAGTAGATA-TTAGGTAAAAAATGTAATACACTTTGTTTGACACAAAGTAGGTACTCAGTAAACAAAATTCCAATAATCCTTAACTGGAATACTCCTCGTTAAATTAAGGAATGCTAAAATGTAAAGCAAGAA-----ACTTCCCTAAATGTTAAACACTATTTCAAATCAATATCACGGTAAGAATGGACTCATGTTCTTCTCAATTCATCTCATGAAATCACTGTGCTTCTAGTCCCCAGTAACTAACCTGGAGCTTAGTCAGCATGCCTGGGCTCTCAGATGGAGGCCCAGGGATCACCTCTGGCTCCTCTTCTACCTCCTCAAAACGGGGTATTCGTCGCTTCTTTACTCCTGATGATTCCTTGGAAATTTCAGAGTCATCACCAAACACCTCCTAAGGGAACCCAAGATGAAAAAA-AGTTGTATCCCTTTCCTTAGGGAGAAGGGAAGAATTATTCTAGCCCCTACCAGTATTCTGTGGTTTTCCCAGGGGAATAGGATGCAACCTTGCAAATAACTACTTGCCAGAAGTAGGGTCTTCTAGACTCTCCACCAAATGGACCATTTCACTTAACTTCATTGTTCTACTTG------TCAAGCAAACTATATACTCATATTCTAA--AATGTTCCTATCTCAAGGTCTTTGCAAGTGCTACTGCCTACATTTGTAAAGCTTTTCCTCAACTTTTCCATAACCCTTATTCCAAATTCTGTCTAAAACTCACCTCCTC-AGGAAGTTTTCCTCATTATAACCTTAACAACTCAAATCAAACTTTTGTTTCACATCTTCTTAGCAATTAAGAGCTTGGTTCATATGAGCTTAAACTACATTGTTAATACTGGTTGCCGAGTGTTAGGTCTTTCAGTGGTGGTAGTTTCTCCCAA-------CTAAGCTCTTCCAGGACAGggcctttctctttctcagtatTCCCCAATAATGCTTCATTCTTACCA----ATGGAAACTCAAATAGGCTGACTAACTTGCAAGGTGAATTTAACAGGATCAAGAGTGGCCAACTGGAAGGGACAATGGGAAAAAGCAAATGTACACACCGGTGGTAGGCTTTGGGTGACATCCCCTCTTCACTAGGAGGGCTCGTGTTTTGCAAGGACATATCCTCGGCCAGGGGCGAGCGCTTCCTGGAACTCCTACAGTTCAAGAAAAAGGACTCTCCCATAATATATTGTGTGGAGTGGGGACCTGAATGGACC-AAAATGGGACCCATATCCCATGGCTATCTAGATACCTCCTTTGAGAAACCGTTTTACTAATCCCACCCACTGTAGTCACTTTACTCATAGAATTGTCTCAGAACTTACACAGTGGCACACCCTATCTTAATATAATCTTCA-TGTACAGATCCGTGTAAGCTATGGATTA----CTTCCTTTAAGTAACAAAACTCAGCAaaagtttgaaattttataactgccctaaaatttacatggaacaGCTATTCAGATTTCAAAATCTGTGACTATATTTTATTGTACCctccatcttttttaaaatgtcaatttttttaaagggaaagatTATGTCTCATTCCTCTGATCACCCTATAatgctctaaaaataaaagacacaagaatttctatttttactggTTCCA------------AAAAGCCAAACAGTCATTGCTTAGCCACTctttgtg----tttctagaaatcaATGGGGTAACCAAGGTACCAAAAAGCACTTTGGAAGGTTTGATATGa

a score=28045
s chr3            95850814 1356 + 160039680 AAGAGAGCCAAAGGGAAGCGAGAT-AGAGAAACTGGCTATGTTAGGGAACTGAGGTAAGAGAGACCAGCCA-CTGACACTGCTCATGTT--AAAAGGCCACGACTACACAGCAACCACAGAATATGCA-TCTAGTAGAAAAGGGAGTATTTCTAACTCTTTTACTTGGCCCACTCATGAAGACAG-TGACCCTCAGTAGGGTGCAGAGCAAT--GTGGGCT-------ATATGGAAGTTGTTTTTAGGAATCTTATCTCCATGTACATTACATAGAAATGTCTATTAATGAGGAAGAATGAGGTCTACAGTCA-GGCAGCAGTGGAA--ATAATCTGAAGCATGTCTAGGCTTCAAGCAATCCAAGATTCTTGGATTGCTCAATCTATAGGTAGTAGTAAGGA---------GGGAACAGTGAAAACAAAA----CCACATGTGAAAAA-AGGACCAGACTATCAATTACT---------TCTTTGAACTACTTCAAATGAACTTCACTCAT-------AGACCATGATAATGAAAACCCTACTCCTCTACTTTAATTCTAAGATTCCCTCTACGTAttctattttgttgttgtttttatctatttatttgttgcagtaatggactgagcccagggcctcatgcatgccgggcaatcactctattaatgagctatatccccatacccAATATTAGGTGTTCTAATAGTAGATGCCAA--GTGTGAGCGAGGTAAGCTCAGCACGTTTCTTATCGTTCCAAACACTGCTGAGCTTCTTAGATAACAAACCATAACCTACCTTTAACTCTCGCTTTCTGCTTCTGTCACTGCTAGACTTGGAATGCCTTGAGCTTCGGCCTTCCTCCACAGCCTCAAACAGCTTATCCACAAATCGGAGAGTGGAATCATCAAGAAAAGGTTTCAGGTGATCTGGCAGGAAAAA-AAGAGGCCATAGATTAAAAAGGTCAAAGCATACAGTCCAGTACCAG--ATGTAATAAATA--GACAATAAA---------AAAAAGAGGGGAAAAGTTTTT--ACtttttttttttttaagatttatttatttattata---------tgtaagtacactgtagctgt-----cttcagacacaccagaagagggcgtcag---atcttgttatggatggttgtgagccatcatgtggttgctgggacttgaacactggacctttggaagaacagtcgggtactc-----ttacccactgagccatct---caccagcccAA--------------GTTTTT----ACTTTTTTTGTTATTGttttattttgtttgagccagggtttctctgtgtagccctggctatcgtggaactcagtctgtagaccaggctggcctcaaact--cagagatccacctgtctctgcctcctgaatgctggaattaaaggtgtgtgccaccactgcccag------cAAAGTTTTAAGA
s HiC_scaffold_1 141031178 1290 - 233722169 aagagagatagaGGTAAATGTGATGAGAGAAACTGGCTACTTGAATGAAATGAG---AAAGAGATCAACTAATTGACACTGCTAATACTGAAAAAGATCACAACCaatcagtaaa-acagaatataaagtgTAGTGGGAAAG--AGTACTGCTAG-----TTACTTTGTAC-CTCATGGGTCCAGATGATGTGCAATATGCTATACAGAAATTCATAAGCTCAAGAGTATATAATAACTGTTTTTAGGTATCCTATCTACAAGTGCAGTGCAGAGAAAC--CTATTGACAAGCAACAGTGACATCTACAATTAAGGAATCAATGGAATCACATTCTGAAGCAA--CTGGGTAACAAAAGATACAAA--TCTTAGAGCAATCAATATTTACACAGTAGTGGGGGCAGGGCATGGAGAAACATGAGAACCAAAACTCCTAACTATGAAAAACATGACAAAGCTACCTATTACTACCTACTAATTCtcgaaatattttaaatgaacttaTTGCATCATGCTAAGGTGGTGATAATACAAATTCACCTCCTCTATTTTAGT-CTAAGAACCTCTCT-----------------------------------------------------------------------------------------------------------------TGAACAGTAGGTATTTTAATGGCAGATATAAACTGTATAAGCCAATTAAGATCAACAACTTTGTCATC---CAAAACACTTCTGAGCTCATTAGATAGTAAACCAAAACCTACCTTTAGCTCTCGTTTTCTGCTCCTATCACTGCTAGACTTGGAATGTCTGGAGCTTCGGCCTTCCTCTACAGCTTCAAACAGTTTATCCACAAATCGGAGTGTAGACTCATCAAGAAAAGGTTTTAGATGGTCTGATATGAAAAAGGAGATGGTA-AGATTGAAAAGGTTAGAGTACAGATTCCAGTACTAGAAATGTAATATACATTAGCATTGAAATTTAATTCACAGAAAagagtaaagtttttaaaaattctttgtagcACAGATTTTGTTA--CATTAAATGACCCTACTGTGAGTAAAA-ATAGTTGTTTTTGCTTCTGAATAAGCAGTAGCATAC-TCAGCACAACCTGTTAT-------------------------------AACTTTAGCATCAG--TTTAAAATGAATAACC---CACTCAAAATTTTCCCAAGTAGCAAGCTGTAGACTAGTACAATATTAGCAAAACCTATCTtcataaactttttttgt-----ttttcgtctttttaagacagggtttcactatgaggTTCATGCTGGTCTAG-ACTCACTTTGTAtcacaggctgtccttgaacttgcattgacccttctgcctcaacctcccaagtgctgtgattacaggtatgtgttatC-CTGTCCAGCTTTCtcaaagtttttaaa

a score=21551
s chr3            95853212 848 + 160039680 gtggtgcacactgttaacccctgcactcaggaggcagaggatggtggatc--------tctaag--------gagttccaa------------gtcagacacaactacacag-gagaccttgtctcaaaacaagcaaaTAACAAAAGGAGAAGGGGGCTAGCACCACCTTTCCTTTAATGCTCCTAACAGGGACAACCTGGGGAAGTTCAAATCAGTGTTTGGAAT----CACTA---TACGTCAGAAGAGTGAGAGAGGTACACACCAGCCGCCTTCTTTTTGTCCATGCCCTTCCCCACACAGTTCAAGGCTGCAGTGACCACTGTGGGCTCTGAGAAGCCCAGCACTCTCTTCACCGTCTTCTCTATCCATGGCTTCAGCTCATCCAGCTCCCGCTTAGACAGCGCCATT-TCGGAGAAAATGGAGAATGAGAGCTCCAATGGGACAAAAAAACTACACCT-AAAAGAAACCAAGCAAGAGTCAGAGAAAAGGAAAACAAAACAA------------TCAAGATAATAGCATAATA----AGAGTGCTTTTCCCCATTCCTATTTTCAAC-CCCAAGCACATCTCTCCACTTCATATGAAGGG-AAATACATTCCCT-AAAACCAAGCTTCAAAACAGAAGGAAGGGGTCCATTAGTTTTTGTTTTTGTTTttttttttt----------tttgagatacggtcttaca----------atgtagctca--tacagaactcaacac-------------------ttggc--------------aactctcctgtctccacttgcccagtgagaaattcta----ggagcatacaaccatgcccCACTCATTTGATATTTTAATTCTAACTCAGC-ATCAGTCATCATTGCTATCTAAAGAATGAACAAAC--TAGGAATAACGTAATCTGAGGAATGGGTTCTAAC------TCTGACCCTGTCACACA
s HiC_scaffold_1 141032852 889 - 233722169 gtggtgcac-ctgt-aattccagcactcaagaggctgaggcaggaggattgttgcaagtttgagaccagcccgggttacaaagtgagccaaaggcCAGCCGCAACCAGATGGCGAAACCTGgcctcaaaaggacaaaaaaaaaaaaaaaaaaa-----------------------------------aaaaaaaa-------------aaagcagtatttgAGATGATCCTCTAAGTTATGTCAAAAGAGCTA------TACATACCAGCTGCCTTTTTCTTGTCCATCCCTTTCCCCACACAGTTCAATGCTGCTGTGACCACTGTGGGCTCTGAGAAACCCAGTACTCTCTTCACTGTCTTCTCTATCCATGGTTTCAGCTCATCCAGCTCCCTCTTGGACAGCGCCATTATCCCAGAAAA-GGAGAATGACAGCTTAAATAGGAC------TCTACACCTAAAAAGAGACCAGGAAAGAGTTAAAGTA---GAAAAcaggagaaattttttaaaatccaggaCAATA-CTTAGTATGTCAGAGTGCCTAT-CCTACCTCTATTCTCAATGCCTATACAAGTTCCTCTACTTCATTTGAAGGGAAAATACTTTCCCTGAGAACTATActtcaaagcaaaagaaa---------------ttccatttactttttttttttggtagcaggattgaactcatgaccacacacttgcaagacatgctgctgagctaaaaaccCCCCCAcccttcatttacttttttttttggtggaaccagggattgaactcacgaccttgcacttgtcaagtaggcgcttatgctgctgagcttaatccccagcctcccttcatttactttttaactcTAACTCAGTAAGCACCAATCAATGACATCTGTGGGA-AAACAATCTTTGAGAATAACGTAGTCTGAGAAATGAGTTGTAGCTTCCTTTTTGATCCTGAAAAaca

a score=6962
s chr3            95854287 244 + 160039680 TTTATTACTTAACACA-GTTGGAGAAAAATTTCAACACTATTCATGCTTACATTTGGGTAATCTTAAATCTC--AACATCTTCACCAGCATAAAGATAACTTAATTTCTGATTTTCTTCCTAATGGCTGCATGTCAATCTATTGACTGCACCGACCTCAACTTCCCATAAGACCTCCTCTTAGCACTGCCATGCATCTTAGTATGATCTGGGAATTACTCTTTCAAGATGTTTAAAGACA--------TCTAAAA
s HiC_scaffold_1 141035001 246 - 233722169 TTTATTTTTGAATGCAAGTTAGTATAAAATTTCAGTGTTACTCACATTTACATATGA-TCTCCCTAAATCTTCAAATAGCTGGCAGAGCACTgagaagattttattt---atttattaactatACTTTGCAA--CAGTCAATAAACTGCACTAACTTCAACTTCC---AAGATAACCTATTAGGACAGTCACTCATCACAATATGATCTGGGAATTAATCTTTCAAGATGTTTAAAGATAGCCCTTCTTCTAAAA

a score=25273
s chr3            95854918 1145 + 160039680 CCACCATTCATAAGCCCTTAGGAAAGCAAGTTAATTCCCGAGAGCCTCAGTATACTTATCTTAGAAAATGAG----------ACATCTGGTATAACACtccattcaataaatacttaagttactatttcttgtcaagcagaatacttactgcatgtaaggacacacacagcagtgaacaaaacagccaagaatcctcatgttaatgggacttacaACCCACTACAATTGAATAATAGGCTAGAAAGTTTAAGCAATT------------------------------TTCAAAATCCAGAGTAATAGGTGAAG---CATATTAAGCATATTGG-----------------------------------------------------------------------------ATGTAAGCTC--------------------------------------------------------AAGAAAT---------ATACTAACAAATGGA----------------------------TGTCTTCAAATTCGACCCGA-------------ATGTGCAAACGAAACAGTCAATGGATAA-GAAAGTTTCAGTCAGTA----GAGTTGTCACTAACCAGATGTTCAACTCTAATAGCGAGGGGGCGTCAGCGTCggtggggggctggggggtggaggggaaggggaaggggaaggggagggaggCAGAACGCTGTCTTCTGAATGAGCAGGTAGCAGAATCTCATCTTCCGAAGGGATTCCTTACTTTTCTACGCTACAAGCCC--------CTGGAA--CCCCATGCTCCGGTCTTTGCT------ATCTTCCCACCTGGCCCCGGCCCCAC----CGAGTCCGCGCTAACTCCTCACCTCAGGGCAGGTTTGCCCACCCTGCTGCTTCCCGCCCCCGCCCTTTGCCTTC-AGCCAGCCCATTCTGACTTCTTCCCCGGACAGAACCAGGGAGTCCTCCCAGCCTGCTTCCCGCCGAGCACTCCCGCCCTG--------------------------TCCAGCCGCTCGCACCGAAGGCTACAGCCTTTCGGGCGCGGGGCCACTACTCACCTCACAAACTTCAGCCCCTGAGACGGAGCCCGAACGTTACACCGGAACCGGAAACCTTCCGGTTGCCCTACGGCCCGCCGTCGCTACCGCCACA--CACCGCCACGCTGCGGTCCCTACGGCACGTGACTACGGAAGGCGGGGCCTCAGCTGCGCAGCCGCGGTATCAAGGTgc---cggccgcggggcgcacgcgccgcgggA-TCCTAAAGCCT--------AGTCCGCGGGTTGTCCCGG---AGCGATGCCAAC--GTTAGTTC---GGGCATTATTTCCCGGAGCAGAAATCGGTTGGCATCACATTCCCTCGGGTCCAAAGAGTTAGTGCG
s HiC_scaffold_1 141036516 1382 - 233722169 CCATCATTAACAAGTTTT-----AGGCAAATTAATTCCTCTGAGCCTCGATTTACTCATCTTGCACGTTGAGGGCTATTGGCATATCTA-CATAATAGtcaactcaataaatatt--aactacTAAGCAT-------CAGTACAGTGAGTGC---TGAGAATGCATACAGCAGTAAACAAATCGGACAAGAATCTTTATCTTAATGGAGTTTGCATTCCACTAGAATTGCACCATAAGCGAGAAAGTATAAGGAacccaatcaataaatgaaagTACCAATCATTGATTGAAAACCCA-ATCAATAAATGAAGtaccaagctgggcatggtggtgcactccagtaatcccagcacttaggaggctgtggcaggagaatcgtttgcaagttcgagacccgCGTGGACTACTATGTGAGCCcgcagccagcctgaactacttagcaagaccctgtctcaaaaagacaacaataataataataaatgaagtaCCAATATTACCAGATGGAATGTGCGTCCAACTGCTATGCTAATGAATGTATTCAAATTCAACCCAACCCCGGTATGAAAATGTGCAAACTTAATAGccaatgaagaaagaaagtttCCAACAGTAACTTGCTTTGCCAGGCATCAAATGCTCAACAATTACTGTGCAGTGGCAGTAGCA------------------------------GAAATGTGAGAGGAGATTAACGCAGAGT-CCATTCTCTGAACTAGCGGGCAGCAGAACCCAATCTTCTGAAGGAATCCCTTACTCTTCTTAGCCAGAACCCCAGTGTTCCCCGGAAACCCCCATTCTTCTAGTTTTGCTCCCTCTGCCTTTCCATCTGGTCAAGTCCTCTCAACTCTGTTCCACCCCAACTCCTCACCTCAGGGC-TGTCTCCCCACCCCGCACCCTCCCGCCCCCGCCCTTTTCCTCCCAGCAATTTCATTCCGGCCTCCGCTCT--ACAGCCCCGACCACTTTCCTCAGTCGCTTTCCCGCCCGACTCTCTGGCCCAGGAATTTCCCCGGCCCTCAGACCCGGACCCCGTCGCTGAGATCGTAGGATAC--TTTCCCTGGC-CGCAGCCACTACTCACCTCACAAACTTCAGCCCCTGAGACGGAGCTCGAACGTTACACCGGAACCGGAAACCTTCGGCCTGCCCTACGGCCCGCCGTCGCTACAGACACAGCCGCCGCCACGCTGCGGGCCTT-TGACACGTGACTG-GGGAGCCGGCGGC-CGACTGCGCAGCCGCAGT----CGGCACTTACTGTGGCAGCGCGCAGGCCTGGTGGGAGGCCCAAAGCTTCCGGGTGCAAGTCGTGGGCCTTCCCCAGCTAAAGCTGGTAACTAGCTAACTCAGTGGTCATTGGCCCCTACAGCAGGAGTTGGGCCACTTTGAAGTTTTTCTCGTGGGAAAAGTAAGTGTG

a score=21025
s chr3            95862549 685 + 160039680 gctgagccatctctccagcccTCATTCTTT-------ATTTTCATTTTAATCAAAGACGGGGTCCGCTGTGGACCAATAAGACAGCTTCTGTATGTCCAAGCCTTCTTGTTCACCTGTGATGGAGTTTTTATTATAGAGAAAAGTAACAGAACTTGGCTGGATAAAGAAA-GGAGTTGGACATGGGTGTGTGGG-TGCCTAGCCCCAAGCCTCAGCAGCCCAGCCACGGGTCTGCACGGTTCTTTCGCATCAAGAAGTTAATCTTTCGAGCCATTTCCATGTTGTAGATCCTCCGGCATGTTTCATAGCTCTCCCGCTGGCGGCGGCGGCAAGGCTTCTCATAGTAGCGTCGTCGACTTATGACTTCGGTAAGCCCATCCGTGGTGAGGATTCTGTATAAAGGCAGGTGATGAAGTCAGATGCTGTTCGTCATCACTGTTCCTTACCAGTTTCACTGCCCATCGGAAGTCAAGAGGCAAAAATAACTTGTGTT--TGAAAATGATGG-------TGGTGACAACATAACACTGACTGCTTTCTAGAGGCTGCAGTAAGACCCCGTGAGGTAAATTTAAAAAGCAGCCATAGTGCTTACCCTGGAGCTACGCTCTCTCTTTGACTCCCTCCACACACCACGCCCACGGTGTAAGACA-GCCTCTGAGGGTCAGTGGTTCCCGGT-GCAGTGCTTTCCAGTCACGGG
s HiC_scaffold_1 141046093 666 - 233722169 GCAGGGCAATCACTTTACTCCTTACTGCTTTTGACTCAGTTTCTCTTTGATGAAAGAAGGGGTTTGCTGCTCACTAGGGGGATAA-ttctatagatgcaaaccttCT-GCATATATGTGACCCAGTTT--ATTACAGAGAACAATAACAAAATGAGTTTTAAGAAAGAGGCGGAAACATAAACGAG-ATGTGGGCTTCCTACCCACAGGCATCAGCAGCCCTGCCATGGATCCGTCCGATTTTTTCGCATCAAGAAGTTGATTTTTCTTGCCATTTCCATGTTGTAGATCCGCCGGCAGGTTTCATAGCTTTCCCGCTGACGGCGGCGGCAAGGCTTCTCATAGTATCTTCGTCGCTTAATATCCTCAATGAGCCCATCCATGGTAAGGATTCTATATAAACACAGGCAATCAGGTTAGAAGCATGGGCTCATTACTATT--TTTCCAGTTTCAAAAATGATCAGAAATCAACTAACCAAAACAACTGTTGTTTATAAAAATTACAGTGGGGAATGGTGACAATATAA-ACTATCTAC-----AGAGGCCCGAATAAGAATTTGC-Aggcaaa-ttaaaaagcaatta-----------------ctAGGTTCTTTGTTT--CTGC-----CATAGCATACTTGAGGAGTATGATGCATCTCATGTGAACACTAGTTCCTTGTGGCAGTTATTTCCAATCAGGGG

a score=9181
s chr3            95862679 263 + 160039680 AGAAAAGTAACAGAA--CTTGGCTGGATAAAGAAAGGAGTTGG--------ACATGGGTG-TGTGGGT-GCCTAGCCCCAAGCCTCAGCAGCCCAGCCACGGGTCTGCACGGTTCTTTCGCATCAAGAAGTTAATCTTTCGAGCCATTTCCATGTTGTAGATCCTCCGGCATGTTTCATAGCTCTCCCGCTGGCGGCGGCGGCAAGGCTTCTCATAGTAGCGTCGTCGACTTATGACTTCGGTAAGCCCATCCGTGGTGAGGATTCTGTATAAAG
s HiC_scaffold_1 119610538 265 - 233722169 aaaaagatgacagaaaattGGGCTGGAGAAACAAAAGAGTTTGTATAAACAACATGGTTAACATGGACCTCTTATCTGCAAGCTTCGACAGCCCTGCTAGAGATCTGCCTGATTCTTTTGCATCAAGAACTTGATCCTTTGAGCCATTTTCATGTTTTAGACCCATCAGCAGATTTTGCAACTTTCTTACTTTCACAGATGGCAAGGTTTCTTAAAATATCACTGT----------CCTCAACGAGGCCATCCACGGCGAGGATTCTGCTTAGGG

a score=22186
s chr3            95864981 578 + 160039680 TGGGAAGGTGTTACTAGTGTCACCTTGGTCTACAAAGGTAGTTCAAGGACTAGCAAATGAGAGCTT-AGTGTAAACAGATCAGCTTAGAGTTCTGGTGCCTGGCAACCCTACATGACGGAGAAACCAGCTGCCAGTTTTAGTAAAATTCAACTGATTATGTAAAAGGAGCCGAGCGGCTTCCAAGAGGAACCTGGGGGTGGCAGATTCACATGTCAATGTAGCCAGGCTGCGTCAGCCGCTGTGTATGCAGGAGGACTCAATGAACCCAGAAGCTGGCCCATCAGGAGTAAAAGGGGTCAACTGGGAATGCTTCCAGTGTTCTTGTCTTTCCTAGTCTGGGGGCCAGCCAATCACACATGGCTT-CTAGCAACCCCCACTCTCCACATCCTCATGTCAGGGCTCCAATGAAGGCCCCTGGTTACATAACAGGCATTTC-TGGCAGTCTCCTGGGGTAGGCACATAGGCCTTCCCCTTTG-TAAGGCTCCCGGTGCGCTCCAAACTCCACGAAAGCTCGACCA--TGGCTCCCCT--------GTCCCTTACAACCGCTAATGCAATCAGATCACAGAATGAGAGGCTTACTT
s HiC_scaffold_1 141050906 548 - 233722169 TAGGAAGGTGTTACTA----TgtttctgcttccaaagataGTTCAAGAGCTAGCAGAGCAGGGCTTCAAAGTAAATAGATCAGCTTGGAGTTCAGGTGCCTGGTGACCTAACATGAAGGAGAAATGAGCTGCCAGGTTTAATGAAATTCAACTGATTATATAAAAGGAACTGAGCTGCctggagggaggagctggggatggCAGA-TCACATGTCA--GTAGCCAGTCAG----GGCCAAGGTGTA---------------------------CAGGCCCACCAGGAGTAAAAGGGGTCAAC-AGGCATACTTCCAGCATGTTTGCCTTTCCTTGTTTGGCTAACAGCCAATCACACAGGACTTCCTAATAACCCTCACTCTCCATCTCCTCATCCTAGGGTGGCAACAAGGGCCCCTGGTTATGTAACAGGCATTTTGTAGCAGCCTCACTGGGCAGACACACGGCTGGTTTTCTTTGTTAAGACGCTTTCTGTGCTCCAAACATGGTAAAGCTTTAATCACCTTCCTCTCCTCTAATTTGCTCTCTTAC-----CTTTTGTAATTACAGCACAGAACAAgcaacttattt

a score=9209
s chr3            95870396 239 + 160039680 GCTGGCACCAGTGGTAGGCTTTATGAGGTGGTAGGCTGGGTGCAGGATCACCTCACATTTCCCACG--GCTGGTCCAGGCAAGACTC-GACTCATT-----TTACCTGTTCAGGGTCCGGTAGGCACCTTCCACGTTCCCCTCCTGAACCATCACTGTCCTGGCAATGAACTTCAGATGTTTAGCCATGGCCTCGTATTTAAATCTTCATTCTTCCGGGACTACAGACTGGACATCGAGCATGGAAA
s HiC_scaffold_1 141055012 238 - 233722169 GCTGGCACCAGTT-TGAAATTTACGATGGGACAGG--AAGCGAAGGATCA--TTGCATTTCCCAAAAAGTTGACCTAAGTATGATTCTGATTCTTCAACAGTCACCTGTTTAGTGTCCTGTATGCACCTTCCACATTCCCGTCTTGTACCATCACAGTCCTGGCAATAAACTTCAGATGTCTTGCCATGATCTCACATTTAAGTCTTCACTCTG-CAGGACTACACA---AAGATCAGGTAAGAAAA

a score=5828
s chr3            95870493 113 + 160039680 CTGTTCAGGGTCCGGTAGGCACCTTCCACGTTCCCCTCCTGAACCATCACTGTCCTGGCAATGAACTTCAGATGTTTAGCCATGGCCTCGTATTTAAATCTTCATTCTTCCGG
s HiC_scaffold_1 119610793 113 - 233722169 CTGCTTAGGGTCCTCCATGGATCATCCATGTTCTCTTCTGGTACTATTACAATCCTGGAAATGAACTTCATACATTTTGCCATGACCTTGTATTTAAGTCTTCACTCTGCAGG

a score=34351
s chr3            95878486 787 + 160039680 aaaaaaaAAAGCATTTAAGTAAAAAATGTCTTTAATCAGAAAGGATTTCTATTTCCTCACCACAAATACATTAAAGTAAAAAAAAAAATACACATAAAACATACATTTATACAAATTGGGAATCA-GGGGAAAGAAGCAGAGCCTGGGTTAGGGCT---GAGGAT------CCGGAGCAACTGGGGGATGGCTAGTCATCTGTGGCTCTGGGTGTCCTTTAGTCATCTCTCTGTCTGTGGTAGGCAGGACAGGCGGACATAGGATGCAACTCCAGTCTGATGGCAGTGTTACTGGCAAACTGTGGCAACGAGGCTCCTCGCCAGGCAGTTTCTTCAGATCACCAGGGACGACAGGAGACAGTGGAGTTGGTGGGACCGGAGTGCCCGGGGCAGAATGGGTGAAGGGCTGTCCTCCTTTCTGGAGGACAAGGATGACACCAATGCTGGCTCCAGTGCCTATGGGGCTGTGGCCA---GAGGCGGAGCCTTGGGAGCTGAGGGGAGGGTTACAAATTGGAGTGCTATGAATCCAGGTGAGGTTCATAGCTGGCCATCCAGTGAGATGCCAAGGCTGCTTTGGTTTCAAAACTAAATGTCCCAGCTGTGTTTGGCCCATCTTCTCTAGGAGAGGTGCAGGAGAAGCAGCCCCGGGGTCACCGTGGTGGCTGGGAAAGTGCTAGAGAATGGGAAA-----TGCAAAACCAGGAGTTAACAAAGCTTACACATGAGTTTCACTTAAGCACAGACCTTTGCTTCCCTTGAGGACTCATTGTACAGTGCAAACAAAC----GTTTGTGCAACAGGT
s HiC_scaffold_1 141060861 795 - 233722169 AAAGAGCAAAACGTTTAGgtaaaaaatttctttaatcaGAAAGGATTT-TATCTTCCCAATATTAATATAC-ACattgaaagtaaaaatatacata---catctaTTTACACAAATTGAAAATCACAGTGGCAGTCACATGGTCTGGGTCAGGGCCTTAGGAGATGGCCAGCTGGAGTGACTGGAGGACAGCATTTCATTTGCTGCTCCAGGTGTCCCATGCTCATTTCTCTGGCCATGGCAGGTGGATCAGTGGAGGACAGCTTACAGCTCCAGTCTGATGGCAGAGCTACAGGCAAACTGTGGCAGCGAGGCCCCTCTCCAGACAGTTTCTTAGGATCACCAAGGATAGCAGAAGATGCTGTAGTAGGTGGGACTGGAGTGGTTGGGGCAGAGTGGGTAAATGGCTGCTTTCCATGCTGGAGGAAAAGGATGAGGCCAATGCTGGTTCTGGCGCCTAAAGGACCCTGGCTAAAGGAGATGGTACCTGGGGAACCAAGAGGGGGGTTGCAAATTGGAACAGTGTGGATCCAGGTAAGATTCATGGCTTGCCACTCTGTGAGGTGCCAAGGCTGCTTTGGTTTCAAAGCTAAATGTCCTAGGTGTGTCTGGTCCATCTTTCCCATAGGAGGT------GAAGCAGCT---GAATCACTGTGGTGGTTTTGAAAATGCTAGAGAgggggagaaattttaaaaaaatctgagacGAAAGATGTCAGATTAGTGCCTCCTGTTTGTTTATCCTTTTGCTTTCCCTGGAGACTCAATTTGCAATGCAAACTTATCTTGTTTTGTCCaacagat

a score=110564
s chr3            95880169 5083 + 160039680 [encoded data, 5456 characters]
s HiC_scaffold_1 141064252 4784 - 233722169 [encoded data, 5456 characters]

a score=16441
s chr3            95887969 2414 + 160039680 tgttttattacagtaaaagaaa-----accaa----acAACAATACCTCCATAGCAGCATTAATGACACAGTTCTGCCCTCCTGCA----------AAACCTGCCTTGTTTCCTGCAGGTCACGAGCCCTAGGATCTGTCTGGGTAAGAGATGTCATACCGTCCTCCTCCTCAATCCCCATTTGACTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTTCGTGGTTACAGGATTCTGAGGGTCCATAAGTTCTGTATGAAGACTGTATGAAGAGGCTGTAGTCTCTACCGCTTCTGTTGTTGTTACCTCCTTATTCAAcctgttctgccctcggtaggattgggaaac----agttatcatttcttccatacagtatctccataGATGCTCTAGTT-AAGAGTTTTCCATCTTTTCCTACAAGCAAGCCTCCTAATCAACCCCACAGGCTCAGGGATGTCTGGGCCTGCTGCTAGTACAGATTGAGTATGTATGTATTCCATTCATCAATTCCCTTAACTGTCCCTCCTCCGTGTATTAGTAAGCCTACTAGGTTCTGGCTTCCTTCTCCCAGCTATAGTTAAAGATCTATTTGTGACCCACATCCTAGTTTCTATCTATCAGATTTTCTTTTCtccttccttccttccttccttccttccttcattccttctttcctttcttttcccttgagacagtcttactatatagtcacggttgaattggaacttgctatggagaccaggttgacctagtacccatagtactcctcctgcctctgcttcccaagtgctgggattatagaactggactaccacacccagcCTCACATTTTAGCACTTCCCTGTTTCTGTTTTAGTGTTATTTGTCCTGG-----TAGAGAAGTCACTCACCAACCTATCCTCTGACTCAAACACGGAGTAATCAACAGTGAAGTTTACACTGAAGTCATCTGGAGAAGAGAAAAAGAAACAAGTGAAA---GGGGAAGAAACTTCACACTCAGGATCCTTACA-TTGCGTTGTATTGGTACAACCTACATTGTAAAGTGTATTGGTGTAACAT--ACTTC-TAGTTAGCTGTAGTGTTAAAATATTTGTGAATTTgagccggagaaataaa---tggctgaacagttaagaacatggcttgctctttcagaggacgccag-----tttagtttcccgaat-------------ccacactgagcagctctcagccgctcataactccagctccTCACACACCTCACT------ACATACGCATAATCGAAAATAATACTGAAAACTAAATCTTAACTGTTTGTGAGTATGTATGGATTTATATTATCACTCTAGTATGTACAATAATTTACAGATTGGAAATTTTCTAAATTGTCCCAACCATTTTCCAAAACATAACAATATAATGAGCTTAAggggctggagagatgagtggctcaggggttaggagcactggctgctcttccagaggatgtgggttcagttctcagacccacctgttagctcacaaccacctgaaactccagttccaggggatccaatgccctcttttgacctaggtaggcaccaggtatacatgaggtacacagacatacat---------gcaggtaaaatgctcataaacataaaatTCTTACTTTTTTTTTTTTTTTAATCATGAGCCTAAGAAATAATACCAAGAGTCTTGAAAGTTTTGTTATTGTTCTTTTGCAAA---------------------ATGAAGGACAATCTTGGAACTAAGTGGTCCCCAAA------TCTACCCCACTAAGAATCAGAGCCTTTCACATACGCACCATAATTAGGGGTCACTGTGTAATAATAATATGCCACTTGATAGTAATCACCCTCTTCCAGCTGCTCTTCATGGTCGTATTCCTGTCCTGCAAGGCACAAGAGTTACAGGTCAG--AGCATCTGGAACCCCTTAGCAACAGCACACATGTTGTTGATCACAGAGCTCTCCCAGCTTCTTTCTGCTTCCTCTCCAG-----AGGTCTCTCCCTGCCTCTGTACATCTATGTTGGCCCAAGTTTCCTGGCATC-TAGCTGCGGTGAGGACAG-TATTCTGT----------------TTTCAGTGCAGAACTCCCAGGACAGAAAGCAGATTCTT---------TCACATCCTCTAAGCCCCAAGG-----------GAGATATATGTAAAGCCTTTAAAAGTGGAAGA-----Cagccgggcggtggtggcgcatgcctttaatcccag-cacttgggaggcagaggcaggcagatttctgagtttgaggccagtctggtctacaaagtgagttccaggacac-------agagaacccctgtctcaaaaaacaaaaacaaaacaaaacaaaaaacaaacaacaaaaaaAGTGGAAGACAGAGCCCAAAAAAATTTAGAAAAGCTATATACATTCTATATGTTCCCAAATTTTCCTCATAAAAGACAC-----------TCAATG--TTTTagatttgg-ttttacttccagctccactgctagctaagcagaa
s HiC_scaffold_1 141073256 2050 - 233722169 TGTATTACCTCAGTGAAAGATACGATGGCCAATTTGAGATGAACACCTGGACTGCAGCACTAGTTA-----TTTTCCCCACCTCAACCTGGTATTCAGGCCTCCATTAT--ACTGCA--TTACCAGCACTGAGATCTTTCTGGGTTACAGAGGTCTTATCCCCCTCTTCACTGGTCCCCATTCAACTCACTGTTGCCATCG------------------------------TCATTGGTTTTGTGGTTACAGGATTCTCATTGTCCTCAGGTTGGGTTTGAAGACTG-ATG--------GTGGTCTCTACTGCTT---TCGTTGTTACCTCTTTGAACGAATTGTTCTGCATTCACCAGGATTGGGAAACACTGAATTACTATCTTCCCCCTTCAACATCCTCATAGATTCTCTATTTCAAGTGCTTCCC-------------------------------------------------------------------------------------------------------CCCTTCACCAGCTCTCTACCCTGCA----------------------GCTACCATCACCC----------------CTGTCTGGGAATCACTTCCTAATTTCT------------------------------------------CTCCCCCCACCTCGTTTTCACT-------------------------------------------------CTTGCTA-----ATCAG---------------------------------------------------------------------------------TTACATTTCAACATGATCCAGTTTCTTTTAAACTGTTATTTATCTTGATCCTCTGTACAGGTCACTTACCAACTTGTCCTCTGACTCAAACATGGAGTAATCAATGgtgaaatttacattaaaatcatctgggaaggagaaaataaa--taatgatatctgggtgtggtagtgcatgcctgtgaccccagcacttgggaggctgaggcaataaggatgctgtga---gtttgaggccagcctgggctacatagtgagctcaagt-------------cgagcctgaactacacagtgagaccctgtctcaaaaaacaaaaacaaaattag---taaaaaaagaagaaagggaactCTAGATTCAGGAATGGAAAGCAATTGCTCAGAATGATC--TTCTTGATCAACTTCAACTTGATCAAGTTGTAAAATTTATTGGTATAATCCACTCCTAATTAACTTTAATGTT--AAACTA---CTTGAATGAATGTGCGTGTAT----GTTTATATTTACCATCTGGT-TTCAAAATAATTTACCAACAATAAAACTTCCAAATTGTTTCAGCAGTTTTCTTGAGT-TA--AAGATCACTAGCTTGagccg-----ggtatg-gtggctca-----cacctgtaatcccagcccttgaggctgaggtggg----------aggctca-ttgtgagttcgagaccagcctgggctaca--------------------------------aagtgagctcaaggccagcctgaactgcataatgagaccttgtctcaaaaaagaaaaaaaaaaaaaaaaaaaaaaa----------------------gatcactagCTTGAGAAACAGCATTAAGAGTCTTGATAGTTT-----TTGTTCATAGCCAAATTTCTGACTCATTTGCTGTGTGTGAAGGGCAGTCTTAGAGCTAAATAGTCCCACAGCCTCTCTCCACTCAACTAAGGGTTAGAG-------CATACTCACCATAAGTTGGGGTGACTGTGTAATAATAA---ATCACTTGATAATAATCATCCTGTACCA---GTTCTTCATCCTCATATTCTTGACCTATGACA-ACAAGGATTATAGGTGAGGAGGCCTCTGGACCACCTTGG-AACAGAAC--------CTGATCC---AACTCTGCTAG-TTCTGTCTGCCTACCTTCCAAGCGGCATATTATCCCCTGCCTTTGCACCTTGAATCCTCCATAGTCTTCTGGGCTTCATATTTGTAATGAGGCCTGCTAATCTGTGCTTGGCCTCCCTTCCTTTTATTGGTACGTACTGAGGAATGAACCCAcatccttcacactgagctacatccccagacctcctttacattttattttgagaca-----ggatcctggtaaattgctaaatttcccagtttggacttgaacttgaaatcctcttgcctcagtctcctggagtgctgagat-tacaaacctCTGC-CATCAGGCCTGGCTACTCTGCTTGTTCAGTCCAGGAACTCCTAGGGTGGAAAGCACATA-CTATaaagccaaagagaa---aaatcaaaaaaaaaaaaaaaaaaaaagaaggaggcagagactagaaa----tgaaaaatataaagac------tgTGCCCTAGAATTTATTGTATTCGAGAGATGGCTTCTTTTAGCAGTGTCTCTTAGATTTGGATTTTGGTTCTAGCTTCACTGCTAACT-agcagaa

a score=10805
s chr3            95890412 455 + 160039680 accccttttgagacagggtctctctatgtagccctggctgtcctgaaattcactgtatagatcaggctggcctccagctcacagaaacctgcttctgcctttgcctgccaaatgccggcattaaaggcatgcagcaccacagctgggctcgtatcaccttccttaaaaataagtcagctggaccagatgacccatcgtagcgtctctccccttccaaaactaacactgtgtggctttGCTTACTGAATCCAGAATTCTAGGCCTTCTGCTAAACACATC----------------------CCTCCAACCCCAAACTAAGGACACAGGA---------------TTGAAAGGAAAGGAAAACAGTGACACACCTGGCT-----GAGAACAAAG-AGGGGAAGGAGCCAAACTACTCTTGGGATCGTGTCCCTGAAGGCAGCCAGTTTTCTACTGGCCTAA--GCCAACCTATA---CTGGCTTTTC----------TCTTCTTTTTTttttct
s HiC_scaffold_1 141076486 433 - 233722169 acttattttgaggcagggtcttgctatgtagccc-----------------------------aggttggcctccaacttgagacgatct--tcctgcttcagcctgctgagtggtgggatcacaggtgtgcacccctaCAAGTGGCtctattt-------------------tcagtt------------------------------ctttccaaaactaaaaatatacagCTTTCATGGTTGAATCAATTACTCTACACTTCCAGCTAAGCACTTCACTGAACTCCTTGCCAGCTTTCTCTCCAACACCAAACTAATGACACAAGaatctggtggtggtggtggggtgtcaGGAAACAATGAGACACACCTGGCAAGCTAGGaaacaaaggaagggaaggagccaAGCTACTCTTGGGACCCTGTCCCTGAAAGCAGCCAATTTTCCACTATCCTAAAGGCCAACGCATAGCTCTGTCTTTACTAAGagaaagttttctttctattctct

a score=19868
s chr3            95891441 903 + 160039680 CGCACCTATGTCTTTGCTAATAGGAGGTTTGTTTGTTTCCTTGTGCTTTGTGGAAAGGAGAGCCTCTGGCTTCGCTCACT-GATGTTGCTCCCTTGACTTCCAAGCGCCCACT--TCTTTCCTTTA---------TGGCTCCTCACTCTCCTGCTCAGCTCTGTGGTGACAGGAACAGAAATCTGAGTTCAGTCTTGCCGAAGGA---ACTCTCTTTAGAGTCCCATCCTCCACCGGCCTGTGTCTTATTTGACAAGACTTCGCTTTGCTTTGCCTTTGGTTTCCTGGCTCCACCTTCCAGATCCCTGCTCTGCCCCCAACCCTGGACTCCA--ACAGCTGAGAAAAGCAGTACAGCTCCCCGCTGAAATGCCCGACGTACTGCTC--TCTGTTTCCTTTTCTCTCATCCCATTTATAGCAAAAGACCTGGCACAAAAGGCCAGGGTCAGAAGGA-----GACTTACCCAGGATGAGTGGTGCAACAAGGAGGGCTATAAAGAGGACATCCATTCTGGGTTTTGCACTATCACTGTGTAAGTTAAAAGAGGAAATTGC--TGTTTCCCACCACACTTACCCCGCCTCCCCTGCTGCTGTGAAGCTGGGAGGGCACTGGAGTGATTCTTCTCCCAGGGGACAGAACTCTCCGCCTACTCGCTCCGTAGATCTTTACATAGCTGCTGG---------ACCTAGAGCCAACCCCCTT------AACCCCCTTG----TTGGA----TGCTAACTTGTTATTCCTGGAGAGCCCCTAGCCCTGGATTAGGTCCGCTCAGGACTCCCACTGCTGG---------GACCA--AAGTTCACCCTCTCCTCTCCCCTCCTATGCTTCCTCCCTCTCAATGCTCCCCAAAA-TCCACCTTCCTTCTTGCAGGCCTTAAGTTACCATTGCTGTGCAGGGTTGCTCTCCACTCTGAGG--GAAACATGATCTTTTTT
s HiC_scaffold_1 141076875 887 - 233722169 CATAGCTCTGTCTTTACTAAGagaaagttt-----tctttctattctctg-gGAAAGGAGATAACTTGGCTTCTTTCACTAGTTGCAGACTGCCCATCTTCCAAGGGTCCATTCATCTTTTCCCTACTCTTACATTAGTCCTTC---TTGTTATTCAGTGTTGTGGTGGTGGAAGC------TTAAGTTTGCCCTTACTAAAAGATCCCCTCTCTCTGGGACTCTGTTGTC---------------TATATGACATGTCATTAC-------------------CTTGAGTCTGCCTTCCAGATC--TTCCCTGCTCCCTACTCTGGACCCCGGCACAGATGAGAAATACCTTAC---TTCCCACTGAAATGCACCATGCACCTTTTCATTCGTTCCCTTTTGCCCTGTCC---TTATAG---AGGGCCTGGTACAAAAGCTGGGAGCAGGAAAGAAAGTGGACTTACCCAAGATAAGTGGCACAACAAGGATGGCTGTGAAGAGGACATCCATTCTGGATTTTTCACAGTCGCTGTGGAAGT--AAAAAGGAAGTTACACTGTTTCCCACCAAACTTTCCCCGCCTCCCCCACGGGC-CAAGGCTGGAAGGAAGCTGTAGGGGCTCCTCTCCCTGCAG-CAGGATTCCCCGCCTCCTTGCTGGCCACATCTTCAGTTA-CTACCGGTTGGTCCTCAGCTTGAGCTGCCCAGATTCTGAGAAGCAGCAGTGAGTTTTGGAGTAGCAGTGGGTTTTTGTGCATCAAGCTCCTCCAGCC-----TTAGGCCCATGTAGGACACCCATTGCCAAAGAAAAGCCAACCAATAAGCTCAtcttctgcctttc---------ctttctccctcccagtCCTCTAGAAAACCCCACCCTCCCTCTCGCTGTCCCTAGCTCACCAGGGCCATTCAGAGTTGCCTTTCTTTTAGCGGCTTAATCATAATCTCTCTT

a score=225695
s chr3            95893024 5242 + 160039680 [encoded data, 5720 characters]
s HiC_scaffold_1 141078931 5465 - 233722169 [encoded data, 5720 characters]

a score=37435
s chr3            95898745 943 + 160039680 GAGAATGCTTTTTAGTAGAAAATAAATACTGCAGGAATAGAAAGTAGGATCTCACCTAATTTTTTGAGCGATGAAATAAACAGCCAGCAGAAGGCAAAGACATCCAGCCAAGATTCCCACACCTAGACCCAGCATCTCTCCTGGGGGAA--ATAAGGA----TGTCAGCT-CAGCCTAACAGGTCCTGATCCATCTTTGCTGGGGCCCGCCTCG---TGCTGCCACATAGGACCC----TCTTACCTGTGGTATACAGTGGTCCTGCTGCAGAGGAAGGGAACTTGGGTTAGAGGAGTTTCAGAACATTTCC--CCCACTTGGGAGCA-----CTGCTTCCACACCTGAGAATTGACCTGGGCGTCCTTTCCTGGGGATGATTCCCGGTCCAGAGGTGTACTGGGAGCCCTTCCCCTCAGCCTTTTCCTTCCCAGGGGTTCACTATTTCACGCCTTTGAGCCCCCCAGTTCCCCATCTCTTCTGAGCCCTGCA-AGTCACCTTGGATGAAAGAAGCAAAGATGGTCCTCTGGTTGAGAGGCTGGGGGACTCTGTAGTTCTGTACAAGGGGCTCAGAGGGGTCCTCTTCTGTAGAGGACAATGTCTCCTGGAGCTTCTCTAACTGGGGAGCAGACATGGAGAAATCACCCCAAGA-CGTTGGAAAGGGTCTGAGGTTCAAGCAGTATTCCCTCTCCACTACT-CACACACCTGTCCCATTGAAATCTGGGCCCTTCTGTTGAAGACTGTCCAGAGCACACTCTGGTAGCAGGGGGGAGTTGTGAGTGAGCCGTTGTAGCGGAAGAATTGCTCCAGCTGTTGGGGGAACAGCTCTCTCACGCTGAAGGGAGGCACAGAGGTCTTCTGATCTGGGGAGGACGGAGCGAGGGT----------------------CAGGCTTCCTGGACAGGATTCCTCTGAGCAGAA--------------TTCACTGCTTTCTCCCCGCCCTCTCCCAAGCCTCTCAGGTCAGGG
s HiC_scaffold_1 141084532 954 - 233722169 GAGAACATTCTGGAATAGAAAAGGA---CTGCAGGACTGTAAGGTAGAGCCTCACCGAATCCTTTTAGCGATGAAGTAAGCAGCcaccaggaggcagagacagccCAGCACGATTCCCACAGCTAGACTCAGCATTTCACCTGGGGAGACAATGATGAAAAGTGTCAGCTTCAGACTAAC--------------CTAGGCCTGGGACCTCCCCAGTTTGCTGACAGACCCCACCCCTTGTCTTACCTGTGGTATACACAGGTCCTACTGTAGGGGAAGAAAACATGGATTAATGGGGCTGCA----AGTTCCATCCCAGCTGACATCAGCATGCTGTTTCTCTGATGGGACAATCACCCGGGCATACAGGGCTGGGACTGGGTCCCAGTCCAGGTTAGGAACTGGA------------AATCTCTTTTCTCCCAAGAGGTCACTAGTTCCTGCCATTGAGTCCTTGGGTTTCCCATCATTACTGAGCCTTTCATAGTCACCTTGGATGAAAGAAGCAAAGACAGCTCGCTGGTTGAGAGGCTGAGGAGCTCGGTAGTTCTGGACCAGGGCCTCTGAGGGCTCTTCTTCTGTAGAGAACAGTGTCTGCTGAAGCCTTTCCAGCTGAGTAGAAGA--GTGAGAAGTTGCTTTAGGGGCGTGGGAAGTAGTCTGATGT-CAACCA---TGTCTTCACCACCACCACACTCACCTGTCCCACTGAAATCTGGGCCCTTCTGTTGAAGACTGTCCAGAGCACACTCTGATAGCAGGGAGGAGTGGTGAGCGAGCCATTGTAGCGGAAGAACTGCTCCAGCTCTGAAGGGAGCAGCTCTCTCACGCTGAAGGGAGGCACTGAGGTCTTCTGATCTAGGGATGACATACCAGGACTGATCTCTCCCTCTGAGCTGTAGCTGCTTACCTAGACCTGGTTTTCCAAAGCAAAACCCATGGGCCTTGGTTTATTGCTTTCTTCCAG----------AGCTTAATAGATCaggg

a score=161967
s chr3            95899679 7527 + 160039680 [encoded data, 7999 characters]
s HiC_scaffold_1 141085832 6597 - 233722169 [encoded data, 7999 characters]

a score=56474
s chr3            95928592 1538 + 160039680 ctCTAATATTCCAACTTTT--TAGCAGTGACAAATGACCTCAGTATCAACTCCTCCTGGACAGTTTTATTTAAAGGCTTCTGACTCAACGTGCTAAACTCAACTCTGCTTTCAGA-GCCGTTCCCCCCTTTATGTTGGAAGTTAAAATACCTTCTTTATCACG-CTCTGGTTCTAC--------AAGCAGTTCGGGACGGGGAGGTGTCACCAACACGCTGTT--------CGCGCTCG--------------CGCCCCTGCTTACACTTTAGCCGCAGAGCAGAAGGCTTGTGCTTTAAGACCACCGAAAGCTC-TGGGTGCAGTGTGTTGCATGACCCACTTACAACTTGGGGATGCCAACGACGCCTTTTCCCTTCCTTTTAACCCTGAAGCCAGAAAAAC-------CCCAAACAAACAAAAACAAACCCAACAGACACCCAAACCGTCCTACTACCAAGGGGAAAGCGCGCCAATCACACAAAGAAAAGGAGGGGGGCGACTGGGATTCAAAATCATTTCTCCGGGACGTACATCCTCCCGAACCTATCGGAATTAACTGCGCGCCTAGTCAGAGCCAATAGACACTGAGTTTCTGGTCCAGGTCCCCCCTAAAGACAAATGGACAACCCTCTAGCCCAATGGAGTCGTGTGACGCTAAGGACTCGACCAATCCCGTTGGGAGGTGGGTGGAGTGTAGGCTAGGGGGGGTTGGCGGTGCCGTGTCATGGAGGCTCAGTCTCGCAGCAGCCATTGAAGGGGAAGGAACTGCGGGCGCGCGCGTGTCTCTCTCCCTCACTCTCTCTGTGTGAAAGTGTGTGCGTGCCCGAGTGTGCGCGCGCGGGTGTGTGGACTCGGAGGTGGGGGCAGCCGAGTTAGTCCCAAGTCGTCGGACTCCATTTGCTATTCTTTTCTTTCTCTCCCACACCCGT---GTGGTAGTGGGCGTTCGTCTTTGCGTCTCTTTTCATTCATCTCCAGACCTTTAGAGGTTTTTTTAGGGTTGGGGATAGTGGGGAGGGCAGGCGAGGGGAA-------------------------AGGAGGAGGACATGGAGATGAAGAAGAAGATTAACATGGAGTTGAAGAACAGAGCCCCGGAGGAGGTGAGATGACTCAGCCCCCATAGTCCCCTCCC----GCCCTGGATCGTGAGGGGTGGGCTTC--GGGGGTCCGGGTGGGTGCGCAGGGCGGGCTGGGAAGCGCGCCCCCACTTGGGGTGGAGGCGGGG----TGT-TTATTTTAAGTTTTAAATCACCAGGCTCTTGTGCTTAAAATGGCGAAGGGCTTAAGTTTCTAGGGGCATTTTCGTGAGCGCGCGGGGGCTCAGC-CCCATGG------------CGTCCTCGCAG----------------------ACTGGTGGCCCGGCATCGCGGGC---------GCGGGCGGCGTGGGCGCGACCCCCGGGTCCTCGCC------------------ACCTGCGAAGTTGGTGTAACTTTcccgcggcgccgcca------------------------------------ctcggccggccgcg--gccccgggTGTGGGACTCGCGCCGA-TCTGTGCCCCACGCTCCCTCCGACCGTGCCCGCTC-----GCGGGCAGCACGCGCCGCGGCCGGGGCCGCAGCGGAATCCCGGGACCCGACGGCGCGGGCCGCGATCCGCGTG
s HiC_scaffold_1 141109912 1638 - 233722169 CTTCAAGATCTCAACATTTATTATCAGCAACAATT--TCTCAGTAATAGTTCCTCC-AGATAATTCTATTTAAAGGTCTCTAACTTG-TATGCTTCACTTAACT--GCTTACAAACATCGTTGTCC--TTCGTGGTGAAAGTTAAAACACCATTTTCATCACGGCTCTGGTTCTGCGCTGCTGAAGACAGTCTGTGG-GGGGTCGCGTCCCCAGCAGAGTAGTACCAGAGGCACGCGTGTAATGTGATGTGTACGCTGCTGC--ACACTTGGGCAGCAAAGCAGA--------------------CCAAGAGTTGGTGTGTGCTGTGCGCCG--TTATTAGCATACAA-TTGGACATGT-AAGGATGTCTACGCCCTCCCTTT-AACACTAAA-CCAGGAAGACAAAGTCCTCCAAACAAA-----ACAAGTACAACAGACATCAAAACCGTCTCAGGGCCT-GAGGAAAGCGCGCCAACCACACAAAGAACAGGAGGGGGGCTACAACGATTCAAAATCTTTTGGCCGGGACGTACAACCTCCTGGACCTATCAGAGTTAACTGCGCGCTTGCTCATAGCCAATAGCCACAGAGTTTCTAGTTCGGGTCCGCCCTGAAGGCTGATAGACACTTACCTCATCCAATGGAACAGTGTGATgatgaaaaataaaccaatacGTTCGGGAGGTGGGTGGAGAGTAGGCCA--GGGGGTTGGCGGTGCCGTGTCATGGAGGCTCAGTCTCTGAGCAGCCATTGAAGGGGAAGGAACTGcgggtgtgtgagtg--------------------tgtgt----gtgcgtgcgtgcgtgtgagTGCGCGCGCGGGTGTGTAGACAAGGAGGTGGGGGCAGACGAGTTAGTCCCAACTCCTTGGACTCCATTtgctattcttttctttctcctccacacCTATCTGGTGGTAGTGGGCGTTTATATTTGCgattcttttcattcatttccaaattttcaaaaa---ttttagggTTGGGGGTAGTAGGAAcagcaggaaaggagaaaggaggagagtagtggcagaagagcaggaggaggacatGGATATGAAGAAGAGGATTAACCTGGAGTTAAGGAACAGAGCCCCGGAGGAGGTGAGATGACTCAGCCCCC-TACTCCTTCCCTGCCAGCCCTGTGTTCTCTGGATCGGATTTCTGGGGGGCCCTGATGGGTGTGTGGGGAGGGCTAAGAGATTAATTCTCACCTAGAATGCGATTGGGGAAAACGTATAATTTGAAGTTTTAAATCACTAAGAACATCCACTTAAAATGGCGAAGGGCTTAAGTTTCTAGGGGCGTTTTTGT--GTGCGCGGGGGCTTCGCGCTCATGGAGTCGGGCGTCCCGGCCTCGTGGGAACGGGAAGCGCGGCCAGGGCGCTCGTAGCTCTGCGCTGCGCGTCCTCCCTGGGCCGGTGGCGTGGGCGCGACCCTTGGTCCCTCGCCTCAGCTGCAGCCATCGCAGCCTGAGAAGTTAGTCCAACTTTTCTGCGCCGCTGCCAACTCTGTGTTTTTCCTGGGGGGTGGGCGCCCCCTGTCTCGAAGCCCCGCGTCGCGCCGGGTTGGGGTCGCCGGCCGAGTCCGCGC----TGCCCGCCCCGGCGGCGCCCACTCCCCCGGGAAGCGGCGCGTGCCGT--CC---GCCCCGGCCGAATCTGGG---TCAGCGACGCCTCCTCCGACCCGTCTG

a score=26865
s chr3            95933816 1136 + 160039680 GGGATT--TCTATTTTGATATTCATGCGTTTAGAATGCTTAGACACCGAAGGGTCTGTTATTA------TGCAAACTAATTATTT---CGTTTCTTCTAACAGGTGACAGAGTTAGTCCTCGATAATTGCTTGTGTGTCAATGGGGAAATCGAAGGCCTGAATGACACCTTTAAGGAACTGGAGTTTCTTAGCATGGCCAACGTGGAGTTGAGTTCCTTGGCCCGGCTTCCCAGCTTGAATAAACTCCGGAAGGTGAGCTGGGATTGGCTGTGGGGACACCGTGGTCTTCACGGCCAGG---CTGATG--GAGTTCTTGGTTAAGTGAAAAGACCATTTCACCTGCCAGCCAGAAAGCTTCAAGTTCCTAGAGATGAGAGGGGAGGA-----AGGGTGCTGGACCCCGGCTCAGTGGCTCTTCTTCTACAGGACCTGGTCAGTTCCTCGCCACAACTCATGTGACTCCAGTGCCAGGGGATCCAGCATCCTCATAAAGACATGCATACAGGCAAAACACCAGCG------CACATAAAACAAAATAAGTAAATCATT---AATACT--GGGaggtgg--------ctcacacatttgggaggcagaggcaggcggatc-tcttgagttccaggccagcctg----cagatggagttccaggacagccagggc--tacaaagaggtcctgtttcaaagaaaatgaaaAAACAGAAACAACAAAAAAAGGGAACTGTAGGAT----TTTGGAATCAGTAATACCTAGAATTTTAAATTAGAATTGTTTTATGGCATAATATTGAATTTAATATCTACCACTGCCCCCTTCAGAAAATCCAAATGAACACAATTGGAGCCATGCCACAGATAAGCCACTGTGTGGGGTTCTGATCGGTTTGCAGATAGATGGGAATTGGGGAAGCTGGAGAGAATAAGGAGTGTTGTTTTGTT------------GATGGG------CAAGGTCCTCTGGCT--------TCATCAGTCTTTGTTTTTCTCTCCATGTTGAATATGTAGTTGGAACTTAGTGACAATATAATTTCTGGAGGCTTGGAAGTCCTGGCAGAGAAATGTCCAAATCTTACCTACCTCAATCTGAGTGGAAACAAAATAAAAGATCTCAGTACAGTAGAAGCGCTGGTAAGT-GGAGGGTGTTGTCACTGGGCTTGATTTAATCT---GATTTGTTCATATTCT
s HiC_scaffold_1 141113878 1109 - 233722169 gggattgattttttttaacattcacaTTCCCATAGTGTCAAGATG----AGGCTCTGTACTAAACGGATTGCAAAGTAATCCTTTGTGTGTTCCCTCTTATAGGTGACGGAATTGGTTCTTGATAATTGCCTGTGTGTCAATGGGGAAATTGAGGGCCTGAATGACACTTTTAAAGAACTAGAATTTCTGAGTATGGCTAATGTGGCATTATGTTCACTGGCCCAGCTTCCCAGCCTAAATAAACTTCGGAAGGTAAGTATGTATTAA-TGTGTGAGCATCATGATTTTAATATCATGGGCTTTTATGTCTAGTTCTTGGCCAAATGAAGGGATCATTTTGCCTGTTAGTTAGAAATTTTAAAGTCTCTAGAGATAGGAGAAAGAGCTCTATAGGATTTTGGA-ATCAGCTC--TAATCTTGCTTttagaaatttgaatttatt--------------atttgaattGTTTTCCAGTGGATTTAACATCtaccaaatatttttctctgaatcAAAATTCAAATGTGGAGCCAGATGTGCTAATGCATATCTATAATTCCcagtacttaggaagctgaggcaggatttccagtacttaggaagctgaggtaggaggatcgttgcaagtttgagaccaacctggctacaaagtgaggtcaaagccagcctaaactgtgcagtgagaacctgtctcaaaaagacaaaaaacaaacaaacaa-acaaaaaaaaaacgcaAAAATCAAATGTGGAACCAAAA------------CTGAATCAGGAGCGTATTATATAGGAATTCTAA--TTATTATTTAACA------------------------GATAAAGATGGGAATC--------TAGAAGTTATGATTTGTAGTGATGGTctctt--------------------------------------ggagtttttttttttttttttttttttaaattggtactctTAAAATCCTGCATCTATCCTAAACCTTCATTCTCTG-TTTTCTGTTCATGTTGAACATATAGTTGGAACTTCCTGACAACGCAATTTCTGGAGGCTTGGAAGTTTTAGCAGAGAAATGTCCAAATCTTACCTACCTCAATCTGAgtggaaacaaaattaaagatcTGAGTACAGTAGAAGCTCTGGTAAGTAGAAAGGTTtggtttctggatttttttttttcctgagatttatttgtatttt

a score=6767
s chr3           95934734 170 + 160039680 CTTCATCAGTCTTTGTTTTTCTCTCCATGTTGAATA---------TGTAGTTGGAACTTAGTGACAATATAATTTCTGGAGGCTTGGAAGTCCTGGCAGAGAAATGTCCAAATCTTACCTACCTCAATCTGAGTGGAAACAAAATAAAAGATCTCAGTACAGTAGAAGCGCTGGTAAGT
s HiC_scaffold_1 59512876 179 - 233722169 CCTCATTGGTATGTGTTTGTGTCTGTACTGTGTGTGCTTTTCCTTTGCAGCTTGAGCTCAGTGACAATAGAATCTTCGGGGGTCTGGACATGTTAGCAGAAAAACTTCCAAATCTCACACATCTAAATTTAAGTGGAAATAAACTGAAAGACATCAGCACCTTGGAACCTTTGGTAAGT

a score=18194
s chr3            95936984 375 + 160039680 TTAAAATCTTGATTGTAACCTTTAACTTTACTTTTTCAGCAAAATCTTAAAAATTTGAAAAGTCTCGACTTGTTTAACTGTGAGATCACAAACCTGGAAGATTATAGAGAAAGTATTTTTGAACTGCTGCAGCAGATCACCTACCTGGACGGATTCGACCAGGAGGACAACGAAGCTCCCGACTCGGAGGAGGAGGATGACGACGACGAG-GGTGAGGCTCTTAGTTTACTATTTACttgtttggagatagggtgtctc--tgtagctctggctgtgctggaattcactgtgtagaccaggctgaccccaa----acagagagccacctgcctctgcccacttcgtgctgggatcaaaggtgttcaccaccatgcctggcAA
s HiC_scaffold_1 141117087 377 - 233722169 TTAAAATCTTGGctgtaaatttt-----tacttttctagcaaaatcttaaaaatttgaaaagtctGGATTTGTTTAACTGTGAGATCACAAACCTGGAAGATTACCGAGAGAGTATTTTTGAATTGCTGCAGCAAATCACATATTTAGATGGATATGATCAGGAAGATAACGAAGCACCAGactcagaagaggaggaggatgaaggtaatcattcatttttttttttttttttttgtcttttttgagacggggtctcgctatgcagttcaggctggctttgagctcactttgtagtccaggctggtctcgaactcacaacgatcttcccacctcagcctattgagtgctgggattatagacgtgagccaccatgcccagtga

a score=7305
s chr3           95937015 186 + 160039680 TTTTTCAGCAAAATCTTAAAAATTTGAAAAGTCTCGACTTGTTTAACTGTGAGATCACAAACCTGGAAGATTATAGAGAAAGTATTTTTGAACTGCTGCAGCAGATCACCTACCTGGACGGATTCGACCAGGAGGACAACGAAGCTCCCGACTCGGA---GGAGGAGGATGACGACGACGAGGGTGAGG
s HiC_scaffold_1 59518646 189 - 233722169 tcCTTCAGAAAAAATTGGATTGTCTGAAAAGCCTGGATTTGTTTAATTGTGAAGTCACCAACCTGAATGACTACCGAGAGAGTGTCTTCAAGCTCTTGCCCCAACTAAGCTACCTGGATGGCTATGACAGAGAGGACCGGGAAGCCCCAGATTCAGATGCAGAGGTAGATGGCGtagatgaagaggagg

a score=5047
s chr3            95939338 195 + 160039680 AAAAACTTCTCTGCCC---TTTATTGAGTGGTGAGTTCTTTAAATGAGAGGCTGTTATGTTAGTCTTTGCATCTAAGAGCCAGTGCATTGAGTG-----GGAAA-------------TAGAATATCCTTAGCCCCTGGGAGTTTAGAGAAGTTACTCTCTCTTCATGTTAAAGTGAGCTTTATTTTCATA-------TTCTAAAATAATTGTTTCTTTTGAAA
s HiC_scaffold_1 141119868 218 - 233722169 agaaactttcATGGCCACTTTCGGTGGGTGGTGAGTACCTGGGAGCAGGGCCATTCAC--TCATCTTCATATCCAAACGTCA-TACATTGACTGCACAGGGAAAGTCTTTGTGAGTTTAGAGAAGT-TTGGCCCTTGTGAGTTTAGAGAAATTACTTTCTCGTAATGTTAAATTGAGGTTTGTTTCCATAATTCATTattcaaaataact-ttttttttgaga

a score=66381
s chr3            95945048 2350 + 160039680 CTCGAACAAATTTCAGAGTGGAAACAA--CTTATATTTTCTCTTGATACTCA-TTTTCTACTAAGATTAAAAGCTTTGTAAAATAAGAAAAACTCAGTTGTTAAAGTCAAGTATCTTACATCCTTCC-----ATTTTAGAGGAAGAGGGTCTTCGGGGAGAGAAGAGAAAGCGAGATGCTGAGGATGACGGGGAGGAAGACGACGATTAGACC--TCCAGGACCAGGCCACCTGACACTCCTGGGCG--CTGGAGAGCGATCACATTGTCTTTGTTTCTTTATGTATGATAGCTGT-CCCAGTAGGAGATGATGTGTAACTTTTTATAGGAAAAGTGTGGTTTTACTATTTTGGCCTTACCATTCCGGTTAAGATTTGCTAGTCTGTTAAT---CATAATGTTCTTAGAAAAGAATTCTCATTCATCTTC----CCATAGTGAAATTCTCTAGCACTGTATTTAGATTCTGGATTTTTATAATTCATGCTTAATGTATTAGACATTTTTAGCCCATAATTAAAACATTGTTGCTTTTACACAGGTGTAGTTTGGTGCATTTCATTCATAGTGTTTTAAAGTTATTTATAAATTAACCAA--TTACACTCAGCTGTAATATGAAATGGCAGTAGTCTTTTGAATGATAAAGCTGGTTTTTTTGTTTTTGGTTGATTTAGAGACGATCCGGCTGTCATTAGCTTGAAGGCATTTTTGGGGGTGGGGTTAGGGTATCTGAAGGCTT-TCCTATCA--TGGTTTGGGAAGTAGAAGCAGAGCGA------------------------------------GAGGGTTCTCTTCAG------AGGCAGGTCATGGACTCAGTTCTGCTCAGTGACAGTTCAGGGCCCTTTAAGGAGCCTGTCCCTTTC--TAAGGCCAGACTTGCCGTGGAGCGGTCTCT----GGGTGGCCGTGCCAGCAGGCTGTCGGTCGGGTCAGCTGTGTGTCCCCTCCCAGCTGCTCCAGAAGGTTCTGTCACCTTCATTGCTTC--ATTCCTGTTCCCATCCAAAAGAAAGCTGGCAAAAGCTGTAATGCCCCAGAGACTTC-------------ATCT-GCACCTCAGCCATCTGTCTCG----------GTTTCAAACAAGTGGCATGGAAGAGATGGAGCATTC-------------------------AAGTTACAGTACCGAGG----GCTTCGTGTCAGAGGCAGGCGTTGCTGACGGCCCGAGTCTGCTAGGAT--------------------------------AAGCAGCAGCGTCCTCTCGCAGAGGTCAGACTGATTGCCAGCTGAGAACTGATGAGACGTTCAGGGCTAGTTTCTAAGTTTTCCTAGTGATTTGGATACCAACTCTGTGAAGTATTTATTATGTTTCTGAGAGCAACCTTTA--ATTCTTCCTGTAGTTTTGAAAGCGTGATCAGTTGTAGCCTTTGATTGGAACATAGTGGCAA--TAGGAGACTGTTTGAAAATCAATCTTGAAGTGTTGGTATTTATTTC-AAATGAATGTC--TGAAAAATAGAAAAAACATTTGGGGTA----CGGGTATGTGTTTTCTCGTGGCTTC-AAACA---TGAGCGGACAGGCCCCTCTCTCTCTCTCCCTTTGTCCCGGAAGCTCCATGCACAAGGCACTTG--CTTTTTAAGTCTTGGTTGCCAGTTTTTGTTTTCCTTTTGTTTTATATACTTCAGGTGGGTTTTTGTTTTGTTTTGTCTTTTTCTTTCTTTTTAAACTTAGCATCAGCA-TACGTATTTTG-CCTCTCTTCTGGGACACATCGAAATTGCAACAGTGGGGCTGCTGCTCTTTCAACTTCACATGTCTGACCTGGT-TTTTAACATAGCAAGTATGAACTTATTTGTAGAGAAGCTAATAAAAGTTGCATGCCTGACTGAGATAAATGTGTACTGAGTTCAGCGCAAGTGCAGGGATCGCCAAAGGATTGGCTTTGTTTCCTTGTTTCAGTAATTGGAAC-TCCTGCTGTCAGTCTCTAAAGAATTCTCTTTGCAAACTATGCCA------GGTTCAAAATAAATGCTTATTTTTAAAAATGAAATCTATATATTGACTTT-TTATCAATCATCT-ATTGTGCAATCAAAATTAGAGTTCTTGAGTTTAAAAACAACGCATAGGGCCTCCAGATAACTATTAAGACTTATTTAGCTTAGTGGGTGGTATTTTCATGCAAATAAGCAAGGGTGGGTTTTCTATTCTGTAGAAGTTCTGGGTTCTGTTCTAACCCTCTCTGTACTGTGCGTGTGTATACCATATGTGAA---------------GTCCTTAGAGACTTTGAGGTTGATTGATACTTTTGTGCAGCTGTGCTTTGACTAACGCCATCACAGTGTTAAACACGA-----GGACGGGCAGCGC---TGATCAT-------GGGGTTCTGACTATTTTGTTTTTTTTCCCTTACTGCTGTAACTT-AAGTTTTTGAAACTGCATTGCTTTGAATAAATTGAAGCGTTATTAATAATGACTAGCTTC
s HiC_scaffold_1 141128287 2417 - 233722169 CTGAAAGAAAtctcagaatggaaaaaaatctagaatattcTTTTACTATTAACTTTTTTTCTGAGACTTAAAACTTTTTAGCTTAACAAATGCTCATTTGTTAAAATTAAGTTTTGTATACTTTTGCTCAAACTCTTAGAAGAAGAAGGACTCCGGGGGGAGAAGAGGAAACGAGATGCTGATGATGACGGGGAGGAGGAAGATGACTAGATCATTCGGAGACCACACTCCCTAGTGTTCCTGGGTGTGCAATAGAGTGATCACAT---CTTTGTTTCCTTGTGTATGATAGCTATTCCCTGCAGAAGATAATGTGTAACTTTTTATAGGAAAAGTGTGGTTTTACTATTTTTGCCTTATCATTCCAATTAAGATTGACTTGTCTATTAATGATCAGACTGTATGTAGAGAACAATTTTCATTGACCCTTTCCACCGTTGTGAAATTCTCTAGCAATTTATTTAGtatcttaatttttctaattcaAGCACAGTGTATTAGTCATTTTTAGCCCATAAATAAGA-----TCACTTTTACACATGTGTAGTTGGGTGTATTTCATTCATAaggttttaaagttatttataaattaaCTAAAATTACAGTCAGCTATAATATGAAATGACAATAGACTC--GAATGATAG-Gttgattatttt------------tttagaaatgatTCAGAGATGTTTAGTTTGAAGGCAGT----GACTTTGGCTAAGGGTATTTGGATACTTGTTACATGAACTAAGTTGGAAAGCAGATGCAGGACAATGCAGGTCTTACTGAGCAATGTATTTTTTGGATTTTGGGGGTGCTATTCAGTAATTAATGTAATTTGTGGATTTTGTGGTGACTGATAAgagttta----tttttgaagaaaagattGCTTATATTAAGTCCAGA---GGCATGCGGTAACCTCCCCTGGGATGCCCACACTCGTGTGTTCTGTATCTGGTTCgccttctctctcctctcagtAGCT---------TCTGTGCTCCCCTCTGCTTCTTGTCCCACTTTTTGTCC----------TGGAAGAAGGTTTGGCACCTTGTAGATTTCTATAAAACCTTTAGTCTCATACCTCAGTCACCTTTTCAGACCTGACCGAGTTTTAAATAAgtgg-----aagaaattgaaaatttttttcagatcTGAATGTTGTTGATACAGTTTTATTAACGAGGTTCTACTTACTGTATAATGC-TTCTTGGTTGACAACATAGGT-TATTAggatgaagaaaagagagaaagaagggaggctTTTGCAAGTAGTATTAGTGTTTCTTAAAAGCCCGAAGAATTGCCTGTTGATAATTATATTTACATT---------------GGCTTCCCAAAGGATTTGGATATCAACCCTGCAAAGTATTTATAGTTTTTCTGAGTAGAACTTTAATTATCCTTTCTATAGTTTTAA---TGTG----GATATAACATTT--TTGGAATATGGTAGGTagttggaaaaatatttgaaactaaatT----GATAATAAGATGTATTTCCAAACCGATGCTCATTACAAATAGAATAA-TATTTGAGGTAAATGTGAGTCTGTGCTTATCCA--GCTCCTAAACAGCCTGATGAGACAAGTCCATTTCCCTTT------TTGTCAAGGAAGTTTCATGTTCAAGGCAATTGTGCTTTTTAAATCTTGGCTGTCTG----------------------------------aaattttcctattgttttgattatttgttagtttttaaaa--agtgtcagcAATTTGAAGTTAGACTTCTCTACTGAGACACATTTAAACCAGCATGGTATTGCTGCTgcttttttagtttaaaaatgagGACTTagtgtttcaaagtaaaaattataaagttattTGTGGAGAAACTAA-AAAAGTTGCA-AACTGGCTGAAAACAAGGGATA---AATTTAGCG-GGGCCCTAGCATCTCCAGAAGactaaaatttttcttctgatttagCAATTGGAATGTCCTATT--TAGTCCCTGA-GCATTCTTATGGCATACTATACCATCAATAAgtacaaaata----cttattttagaaagt-aaatCTGTGTATTGACTTTCTTATCAATCATTTTATTGTGCAATCATAATTAGAGTTCTTTGGTTTGACCTCAACACTTAGCGCCTCCATACGACATTTAAGACTTATGTATCTCTGTGGGTGGTATTTTCATGCAAATAAGTAAGGGTGGGTTTTATATTTTGTAGAAGTTTTGGGTCCTATTTTAATGCTCTTTGTACGGCA-GTGTGTATATAATGTGTTAAATTCCTCAAGAACCTGTCTTCAAAAACTTTGAAG----TTAATACTTTTGTGTAACTGTGTTTTGAATAAAGCCATGACAgtgttaaaaacaaattttaaaaatgcagtactCTTGAtcattcttttattgtttctgacTAGTCCCTATTTTTTCTGTGACTGCTGTAACTTAAAGTTTTGGAAACTGAATTGCTTCAAATAAATTGAAGATTTGTT-ATAATGattagcttc

a score=9356
s chr3            95957361 329 + 160039680 TTACTATTCTTATTTCT--GAGTTTTAAGTCCTACTTCTAATGTTAGTAGTCATATTAA----TACTGCATTTTC-AGAGTCTGTGGAATCTAAATACTGT---TTCCAAGAAAGACCAAACTGTCATCTATGTAAATTAAACTGTGAAAGAGTACGGTGGGAACTTCCTTTTAAATGTCACTCC--------------AGTCAGTTGGCA----------GCCTCCCAATTCCTAGTCAGTCAGTAGGAGCCGT-TATTTGTACTAAAAATGGAACACACTTGGAAGTACACTCTGTCTGGGGAAAGTGTTGGTAATGGAGTGTAGTGTGCATTCCTGGAAGGGCCCGTTATTAAAAATTTAA
s HiC_scaffold_1 141140712 350 - 233722169 ttactatttcTATTTTGAGGAGTCTTAAGGTCTGTCTTTAATGTCAGTATCCTGATTAAACAATGCTGTATTTTTGAGAGTTCATG-AATTTAAAGACTGTGTTTTCCAAGTAAGACTAAACTGTCATCTATGCAAATGAAACTATGA---AGTATAGT--GAACT--CCTGTGAATGTCATACAACATTGTTGATGAGAGTCTGTTTCCACTTTCATGATGACACACAGCTCTTAGG-ATTTAATGGAATTAGTATGTTTGTATCAGAAGCAGAATACACTTGAAAGTATATT---TCT--ggaaaattatagtaaaagagtATAGTGTGCCTTTCTGAATGTGCCTAGTACTGAAAGGTTAA

a score=38775
s chr3           95982810 900 + 160039680 GAGCGGTGC-CCTGGAGGTCCCGTGGATCTGTGTCTTGTTTCAACAGTGTTTGGACTAAACAGACCCGGGGACTCCCACTT-------------------AGCTTCCAGCCGCCTTACAAGTCTCTCCAGTCGCAGCCTCCGGGACCATCTCCTC--CCTCCCTTGGCTCCTAGGACCAGTCTGCACC--TTCTTCGCGGTTAGCTTATACTC-CGGATCAGTCATGACCTCTCAGATTCGTCAGAATTATTCCACTGAAGTGGAAGCTGCTGTGAACCGCCTGGTCAACTTGCACCTGCGGGCCTCCTACACCTACCTCTCTATGGGCTTCTTTTTTGGTCGGGATGACGTGGCTCTGAAGGTCGTAGGTCACTTCTTCTGCGAATTGGTCAAGTTGTAGAAAGATCGCGGGGGGGGGGGTGCGGGGGG-------------------------GAGTGTTGTGCACTCCTTCAGGATGTGCAGAAGCCGGCTCAAGATGAATGGGGTAAAACCCAGGAGGCCTTGGAAGCTGCCTTGGCCCTGGAGAAGAACCTGAACAAGGCACTCTTGGACCTGCATGCCCTGGGTTCTGCCCGCGCAGACCCTCATCTCTGCTACTTCTTGGAAAGCCACTTCCTGGATAAGGAGGTGAAGCTCATCAAGAAGATGGGCAACCACCTGACCAACCTCCATAGGGTGGCAGGGTTACAACCGGGCACAGACTGGCGTGCCCCAAGCATCTCTGGGCGAGTATCTCTTTGAGCGG-TCACTCTCTAGCATGACTAGGAGGCCTCTGTGCCT-------TCCAAGGGGCTCC--CTGCTCTGCTCTGCACCAGCCCGCTCTGAAAGAAC-----CTCTCAAACCACTAGGCAGCTTTGTAAGCGCTCCGGAG-CCTCTCCCAATTCTTGGACC-AAGTTAAAATAAAGCTATTTGAAACAGGAAAAAAAAAAAAA
s HiC_scaffold_1 26161035 914 - 233722169 gagcAGCGCGTCCGGAGGTCCCGCGGATCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGACCCGgggactccttttttttttttttttttttttaaatctcccatCCAC----------TCTCCAGGTACAAATTTTGGGACCATCTTCTCGACCATCTGCTCCTTCCAGGGCCAGCCTACACCGTTCTTTTGTGGGTAGCTCCTTCCCGCTGATCAGCAATGACCTCTCAGATTCGTCAGAATTATTCCACCGAGGTGGAGGCTGCCGTCAACCGCTTGGTGAACCTGCACTTGCAGGCCTCCTACACCTACCTCTCTCTGGGCTACTATTTCGACCGCGACGATGTGGCTTTGGCGGGCGTGGGCCATTTCTTCCGTGAGCTGGCCAAGG---AGAAACGT---------GAGGGTGCCGAGCGCCTCCTGAAAATGCAAAACCAGCGCGGCGGCCGCGCGCTCTTCCAGGACGTGCAGAAGCCTTCTGAGGATGAGTGGGGTAAGACCCTTGATGCTATGGAAGCGGCTCTGACCCTGGAGAAGAGCCTGAACCAAGCTCTTCTGGATCTCCATGCCTTGGGCTCTGCCAAGACAGACCCTCATGTCTGTGATTTTCTGGAGAACCACTTCCTAGATGAGGAAGTGAAGCTCATCAAGAAGATAGGTGACCACCTCACTAACCTCCGCAGGTTA-------------------------GACggtccccaggctgggctgggcgaGTACCTCTTTGAAAGGCTCACACTTAAGCACGACTAGGAGGCCCCAGAGCCTGGCAGTATCTGAGGGGCTCCAGCATCACTG----GCATCAG--GGCTTTGGCTGGACCCTCTCCCTCCAGCCACTAGGCAGTTTTTTCACCTCTTTGGAGTCCCCTCCCAAATCTtggaccaaaagaaaaataaagcctttcacagcaaaaaaaaaaaaaaaa

a score=157814
s chr3            95984950 8657 + 160039680 [encoded data, 10150 characters]
s HiC_scaffold_1 141187616 9223 - 233722169 [encoded data, 10150 characters]

a score=25546
s chr3            95996451 1940 + 160039680 GTAAACAC--AACCACCACGAA-TGAGTAAAGCCC-----------AGAGCAG-------GGGAATTATTTTTTCCCAGAGACGTCCAAGATGAAG---TGTTGG-TAAGTTTGTGGTTT-GAGGAGTGGAGGATGTTTGGGCTTTTTGGGAGAG------AATTTATCAAGAAAGATACCTCTTCTTAGACCCACCGTGCTTCCCAGTCCTGCAA---TCTCACTAGCCATA-TAATTGACTTCTATTTCAGGTGGATACAGAACTTTATGCTTTCAAAATGCTCTTATATTGGCACTTTAGAATGTCGAGTACCATTTTGTAAGGCATATA---AGAGTGAGGATATTATCCCTTGGGAAAAGATCAGTCCAGCACAGGGAACCATTTGTCATGCTCAAACTGACACA--CTGCT-GTTACATGAGTTAGCATAGAGGTTTTCTAACCCGGGTCTGCCTTTTAGACTTTGTACACGTGTACACAGCACACTTTGCAGACTACCCCCTACACACACAGCACACTTTACAGACTAT------------CTCCTCCTCATCTCTGTTTGGTACTGGCCTGTTTAAAGGG-CAAAGAAATGACTGAGAAAGGC-TTTAGGAGGGAGCCTATGTACTAGCATGAGGGCACAGCTGAGGGAATGAGCTTTTGGGAACTTGTTGGCTGAGCAGGTAAGAATGCTTTGGATTATTTTGTCTTTATTTTTTAATAAGACAAGGTCTTTTTTGTTTGTTTGTTTGTTTTGGttttggtttttttcctagacagggtttctctgtgtagccatgactgtcctggaactcactctgtaggccaggccatcactgctgggcttatgacaaggtcttacacagcctacctatgctgctttcagacttgtTACATAGCCAAGGCTGGTCTTGGTCTACCGAGCCTCCTGTCTCCACGTGATTTACCAAGTTTAAATAGGGGCTGAGGGCGTGGCTTGTGGTAGAGTTCTTTGCCTAGCACTCAGCAGGGCGTCTAGCATAATCACCCGCAAATCACCCGCACTCACTCCAAGGAGGAAAAGGAAAGATAGATTT-GGCTCAAGG--CAGAAGGAATTCATGTCT-GCCTCATCTCCCTC--TTCTCTGCAGCTTTCATTTAGTCAACAGCTACTAGAGTCTGTCTCTCCAGTGTGCAAGACCCTGGGCTCC----GCACAGCACCAGGCAGGAGCTAGTGCTCTGTGAAACATCAGGCGGAGGGACTCGTAAAAAATAACC----AAAGTAATTTTCAGATTCTGGAGCAGATGCTTGTGGGCTGCAGCACCTT--CTCTGCCTGTCTGTGTCTTGAGATGTTACATAAATCTCTGGCTGGTCCCCATCCCTCCCGGCCCCTCCCTCCCAGTAACCTGAAATATTAACCTTATAGCCCTG--------GCCTTCTCCCTCACCGTTGCTTCGTTG-------CCTTGACACTGCATGCTCCTATAAGCCAGCTGGTTTGCTTTAAAGCTGGCCTTTCT--CACCGAGTGAACCTCATGGCACCTGCATTTGGATCTAAGTGGGACTGTTTTTAGAGACCAGTGCTTAAGTGAGAAATTGGAAT-AGCACTTCTGGTTTCCTTTACACATTGTTATAGCACTCAGTGAGCAtctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacaACTTGAGCTAATCT---CTCTAG-GGAGATAAGATCCTGCAGGGACTCATG-TGGCTTAGCATGCCCACCT----------GTAAGAG--CATCACCAATAGCTCTACTGAGCAGTTA--------------------------GGGGGATAAGCAAAAACTCTCAGAGGTAACATCTTGTGAATTGCTGTTTATAAGTTTACTGGGCAGAAATATCTGAGCTGACATTTAAAAACAAATATCCTTGACTTTAAAATCCTATTTTAAAAATAGGATTGGTGTTTTGACCAGGACATTTTAACCTATGGGAGAGAGGAAGAGTTATTAAAAACATA
s HiC_scaffold_1 141201454 1677 - 233722169 GTAGGCACCAAATGACCACAAAATGAATAGAGGCCCCAGTTACACAAGAGCAATAGAAAAGGAAAACCCCTTATTCTGGAGATGTCCCGAGTGGAGGTATGTTGGCTAGGTTTGTGATTTTGAGGGATGGAGGGTGTGTGGGCTTTTTCTGATATCTCTGTAACTAGGGGAGAGATGTTTCTTGTCCCAGACTCACC----TTTTTAATCCAATAAATGTTTCACTAACCGTCcttattaatttctgttttatactAATGGCAAACTTTATCCTTTCAAAGTACTCT---GTTGTTTCTTTA-AATCTTTAGTGCCACCTTGTGAAGTTTATAGAAAAAGTATTAATATTCCCATTTGGGAAATGTGAAAGAGGGAATGGAAAATCAACTA----GTCCAAATTTACACAAGTTACTAGTTTAGTGGGTTAGGGT--------TATGATTCCAGTTGACCCTTTAGactttgtacacacacacaca-cacac-----------acacacacacacaca-cacatttcccagaccatttgtcttctttccttcccatcaTGTCTGTCT--TACCCTCCTGTTTAAAAGATcatgaaaatgaatgagaaaatcatttatgaa--aatcaattt-------------cataaataaggaagCAA---------AACATACTA-------AAGTAAGAA----------------------------------------------------------------------------------CTAGGAAGGA---------------ATGATTGT--------------------------------------------------------------------------------------------------------------------------------------GGATTAATCA--CTTAAAT--GGGCTGGGATTGTGCCTCA-GGTAGATTATTTGCCCTAATATGC--CTGAGCCTATGGT-TGATTCCCAGCA---------------CTCCCAAGGGAAACAAAAAGTATAGATTTTGGCTTAGAGGAAAGAAGTAACCCATGACTTGCCCCATCTTCTTCCATTCCCGGTAACTTT----TAGTTAACCAGTATTTGAGTCCTCCTT----ATATGCAAAGTACCAGTCTCCTTGTGTACTGCATCACATAGGAGCTGGAGTTTTGTGAAACATCAGGCAGAAG-ACCCATAAAAAATAACCCTCCAAAGTAATTTTCAGATTCTAGAGCAGATGCATGTGGGCTGCAGAAGCTTGGCTAGGCCTGTCTGCTCCTTAAGATGTTACATAAATCTCTGGCCAGGTTGCTCGCCCCCTTACTGACCCGTGCCACTGCACTGT----TTCACCTTGTTGCCCTTCACTACCTTCCTTCACTTCCCCCACTGTTTTGCAGTGTACCCCCTTAACAGGCCACACTCTTCC---CCAGCCTGTGC---TCAAAGCTGATTGTTCTGTCCCCAGGTGAGCCTTAGGGCACTTGAATTTGAATCAATGTGAGACTTTTTTCAAGGACCAATGCTTACGTGAGAAATCAGAGCAAGCATGTCTGGGTTTCTTTACACATTTTTCTAACACT--------GTCTTTCTGGTGAGCT---------------------TGACACCAGCACAAACCCA-----------AAGCACAAATATAACTCTCAAGCTTCTTCTGACTTTGGTGGAGCTAAGATACTGGA-GGACTCATGATGGGGTTACTCTCCTACCTACATGCATACGTAAGATGCCACTGCCAGTGACTATTCT--CCAGTTATATATCCTATAAGAAATTCTATTTATGGAGAAAAGAGGGAAGCTGGTAGAGGTAAAAGCTTGTGACTTGCTGCTTGCAAGTTTCCTGGGCAGAAACTGTTACCCAAACAGTTAAGAAGAAATACCCTTGGCTT----------TTGTAAATGAGACATAGAGGTTTTGGCTGGGGCATTTCAATCTAAGGGGAAGAAG----GCCATTAAAAGCATA

a score=14613
s chr3            95999706 482 + 160039680 tcaAGAGAAGTCAGGACCTAAGTGATGGTACCGCGTGCATCACATGGCTTTCTGAATCCCTCTTATCTCTGACAACACATTTCTCATATACTACCTCAACAGAGCCCATCAAACACTGAAGC--CTGTGCTGTCAAATACACAAAGAG---TGTGTTTATTCCATACACAATCACAAG-----TGGGTCGGGGTGGGCTCA------TCGTCGGCTCGCAGTCCCGGGG-------TCTGTTCCAGCAGTCCAGGAATCGG--GGTTACCTGG-AGTGAGTCAGAGCAA---ACACAAGGGCCAGCCCCAAAGCCCCTGGTCAGCAGGGAAGGGCCGAGGCAGGTAAG-----AGGAGGCCATGACATTCTCGCCGCTCTCCACTGCCATCTCATCTTCTGTTTGCTGACCTTGAGGTGGCCTGCGAGCTCTCCCTGCTGCGGCTGTGCAGCCCAGAAGCCAGGACTTCCTCTAGGAAGCTGACAAAGAGACTTCAGGTTATTTGGCAGAAAAGCA
s HiC_scaffold_1 141205147 498 - 233722169 TCAAAGGAAGAGAGGACACAGAGGACAGTGGTATG---ATTACCT--TTTTTTAGAGCCCTCTTGGCTCTGATAAAACTTTCCCAGTAAGATCCCCC--CAGAATCCATCAGCAGCTGAAGTGACTGGGCCCTCAAATATACAAAGAAACATTTACTTATCTGATA---AAACACAAGAGGAGTGGGTTGCAATGGGCTCAGACTTACATTCAGCTCA---TCTCAGGGAGCTCTGTCTGTGCCAGCAGCTTGGGAGTCAGTGGGCTACCTGGCGGGGAGTTACAACAACAAGCACAACACCCTTGTCCAACTCCTGTGGTCACCGGGGAAGGCCTGCACCAGGGGAGGGTTTAGGAAGC---GCCATCTTC--CAGTCTCCACTACTGGTTCATCTTCTGTTTGCTGACCTCACTGTGGTTTGAGAGCTCTCCTTGTTTCGGCTGTGCAGTCCTGAAGCCAGCACTTCTTCTAGAAAACTGACAAGGAGATTTAAGGTTACTTTAAGGAAAAGCA

a score=20181
s chr3            96000868 874 + 160039680 GCATGCTGGATAAATGAATTAGTTAAAGTTGCTGCTCCCTGGCGACAGGGGCTTCTGGCTAACATTAGGGTTATTTTGATGGCATTTGTAAGCATGCTCTG------TGGT--GACGAAGGATGGGAAGTAC----------CTCACCCTGCTTCATAGGTC-AGAGCTGGGAGACGCAGGGGCGTGGAGGATTTAAACTCTAAACTCCATT---AGAGACAAAAAATG-----------GGAAGGAGGAGAGGCCATGG-CATTGCCTTCTACTGAAACACAGCTGCCTC--------CTTTCCGTG--------------------------------------------------------TGGCCCCCTTTCTTTCA-----------CCCATCAGACT---GGCAATG---------------CTGGAGGGGCTGAGTCAGGGTCAGGA--GGATGCAACACTGCCATCTGGGAAGGAAAC------AGTCCCCAGC-AGTGGTTTCCAGCAAGGAGGAAGCG-----GCTGGCTGCCCCATTGGAGCTCGTCAGGTGATCTCTGCT-CATTTTCAACTCTAGTACGAAGGGAAAAG--AACTCGCTAAAATTATACAGAATGTTCCTCCCATGTAGATCAGTAAGACCACACATTCCTGACTGCAAAGAGAAAACACGGTATTTGCCAAACCTAATTTTGTTTCCCAGAGCTATTGTGACTTTTC---AAATATCTATTTAGGGACTTTGATGACTCACAGCTCAGAGTACTTAAAAATTATGGGCAACGAACATATTGGTAGCTGCATCCTAAATTTAGACTGTGTTTAAAAACAATGAGACAAAAAGAATGGCTTGTCTA-GATTTCTAAAAAATCAATCTCACCTAAAAACAAACTAAAATATCTCTTGTGGAGCTAGGATCCAATCCAGTTCAGTTAAATTTA--------TTTTAACAAACATTTACTGTGCATGACTGGACTGCACTGAACTACATGTGCGCAGGACCA-CAGCTATGA
s HiC_scaffold_1 141209782 981 - 233722169 gtatgctgaatgaatgaatgaat----atagcTACCCATTGGCAAGAGAAACTTCTCTATAGCTTACAGGTTGTTTGGATGGCATTTATAGATATGCTCAGAACAGAGGGTTGGATGAAGAATG--AAGTACTTTGTTAATACTTCCattgttttacagttttagaCCTGGAAGATTC-TGAGCTTAGAGAATTTAAATTTCAGACTcctttgcaaaagaaaagaaatatatagcaGAGTGAAAGGAGTAGAAGATAAATTCATTTGTCCCCATGGATATATAATCATCTCTGGCTTGGCCTTTTGGGCAGTTAGTTTGGAGACATTTGGAGGTCAAATAACAGTGGTAGGGAATGAGGTAGcatggctttctttttttcagagtaggaaaatttattggacaAAAGGAAAGGGGACTAGGCTTAGCTCCGAAGAGACAGA---AGGTCCTGGATTGGTTGCCA-AGTGCTGTCTTGAAAGATAACTTAGAAGATCTTTGACTACTAACTTCTAGTAAGAATGAAACAAATGTGCTGGGAGGCCCTTGGGAATTTATCAGGTGATTTTTGCTTCATTTCCAACTctgtcacaaaggaaaaaataactttgCTAAAATTATACTTAA-GATCCTCCTCTGTATATCAACAAGACCCCATATTCCTGGCTGCAAAGAGAAAACACTACATTTGCCAAGCCTAATTTTGTTTTCTAGGGCCACTgtgctttgtttaaaaaaatctatttgggGACTTTGATGAGTCATTGCACAGAATGCTTAAAAATCATGGGCAGTGAAC--ATTGGTAGCTGTACCCTAAATGTAGTCTAtgcttaaatataa----aacaaaagaatgattttttaagGATTTGTTTTAAGTCA-------------------------GTCTTCTGTGgcattaaaatacaatttaattcaGTTAAATTCAATTTCTATGTTTACTGAGCCTCTACTGTG---AACTAAA---CACTGAATTA-AGGTACAGATGAACACCAGTCATGA

a score=10311
s chr3            96005532 477 + 160039680 TCTTTAGTTTAAAGATGTTCTAGTGTACACAGAGTCAGGAGACATC-CTTGGGCTGAGTCCTGGTTAAAGTCGACTTCA--------------------TCCTCAT-AAGCGTCTACTTTTGC-GTTAGGCACAAGC-CCTCACAGGCACAGCGCACGCT--------------------AACAGAACTTCACACA--GTCAGTACTAAGGAAAAGCTGGCCAGTGGCAGGAAGAA------AACA-AACTTTTGCA--------------------------------------CAAAGAAAATCTCTACAAAGCCAACGTGATC-CTGATGC--TTTCAAAGGGATCCTGAACCGACCCAAGTTGCAGGAGACTGGTGTATGGGTTCCTTTCTCTTTGACATGCAAATTACGTCATAGTATCCTAATTTTTCTGTAAATAATTCAGGGATTGAACCCACTTGTGGTTAGAGGAGAAGGGCCAAGTGTCTAGTGTTACTTGTTAAGGTA-AGAGCTATGATGCTC-----TTGCTGGCAACACGCAGCAG--CCCTCCTGCCTTCAAGTCTTCCCAGC
s HiC_scaffold_1 141218401 577 - 233722169 tttttaactttaaaaagtgcCAAATAAATTGGAAACATGGGACACAACTAGGTTTGAATCTTGGGCTAAATCAACTTTAAAAGAGGTTATTATTGAAGTTATTCATTACATgtctattttttccattaaacATTAGTATCTTATAGGTACAGAACAGGTTTTTATCTTTCTAGCACCTTGAGCAAAACCTCACACATAATCAGTGTTCCATAAATGCTTGTCAGTCACAGGGGAGCTGTTTCACCATGGTTTTTGCAATGATGTCTAACACTTTGGTCACAGGAGGGAAAAACTCCCAAAGAAATTTCTGCAAAA--AAGGTGATGGCTTCTGCAGTGTAAAAATGATCTTGGGATGCTCATAAGTGAAGAAAAGTGCTCTCTAGATTCCTTTCTCTTTGCAATGCAAATTCTGTCACAGTATCCTAATTTTTTCGTAAATAATTCAGAGACAGAACCAACTTGTGGTTACGGGAGAAGGTCCAAGTTTCTAGTGTTACTTGTTTAGGTAGAAATCTATAGAGTACAGTATCTGCTAATAACATAAATTGGTCCCTTCCCAGCTTCAAATACGCTCAAC

a score=12555
s chr3            96007418 432 + 160039680 TCTTTAACTTTAAAATGGAGATATAATTCATAGATGATAA------CAGATTTTAAGGGTATCATTTGATGAGTCTGACTGAGTGCAGTTGGATAGCTACTTTA-TCAGTCCACACAGGACGGACACTCCATGATCTGCACAGGGGCTTC--ATAAACCAAGAGACAA----AACGCAGCATGAGCTACCAAGCTGATCCCACACTTTTGAGTACATGATGCTAAGCTGCTTTCCAGAAATGTCAAGCAAATTAACATTTCCACTCCAGCCATACTTGAAATTGCCTAA-------CCATACAGTTAAAAATAGTCAAGCCTAGGGGCATGAATTTATTAATATAGATGATATTTAGTTTAGCATTATGTAT---------TTT--AAAATGTAAACAGTCTAAATGCCTGATTACAATGATTAAAGACATACCCtttatattttcatta----aattaaaattatt
s HiC_scaffold_1 141221605 456 - 233722169 ttttttacatttttatttggatATAATTCATAggcaataaaatttacaaattttaagggtATCAGTTGATAAGCTTCAACTAATGTAGCTGAATTACTGTTTCCCTCAGTCAAGATATA--GGACATTTCTATATGTGAGCAAGAGCTTCTTAGAAATCAAGAAACAAGCAAAACCCAACAAAAGCCACAAAGTCAATCCCATACTTTTGAATACATAATGCCAAAATGCTTTGCAGAAAAACTATCCCAATTGATACTTCTATT--AACCATACTGGATACTGTCTCAACTGCATCCTTACATAGGGAAATAATCAAAGATATGAGAAAGAAGTTATCAA-------GATTTTTGttatagtattatatatatatagcccTTTGAAAAAAGTAAACACTTTGAATATCTAATAATCATGGTTAAAGATACAttcttaaaattgaaattatagtcactaagattatt

a score=16108
s chr3            96012767 750 + 160039680 TGTTTCTAAGATTCGGCTGCAGAATAAA-TCTGTGGTAGGCTCAGAATTTTATTTAAGA-TTGCAAAGATCATGGAAAGCAAGTGGCCCAAATCCACAGCAGTTCCACAAG-AAGCATCTCCCGGTCTGTAAAGGCAGCGGCTCTGTCTTGGCACA-------------GTCAGGACACAGGATGTGACTTTCCTGTCTA-TAGGCCTCTCATTATCTCAAATCCCCGTGACGCAGTCCATACCATCTCTTACACAATTCTAAGCACAACAGGAGGGCATTCATTATGGCACATC---TAAAAGTAGACTGCTTTCTAATCTCCATAGTTTCCCAAAATAATACT----GACTGCAGAGCTCTTTCGAGCAGGA--GAGCCTGTGTCA-TTAGCCCTTAGGGC----------------------------ATCACACACTGGAAAACAACAATCC----------CTACATTGAACC--TAACAATTTACAGAGACAAATTACTCAAC-ATATTCTCCACATATTAAAGTCTAAATTGCAAGCTCACAAGTGGCCTACTGTATC----TTCAACATTTTCTCTTTTTTTTTTTCACAGAATATTAACAT---TCTCCCACTGAGTG---TCCCCAGGGCCT--GGGATGCTGTGCACTCGCTCCTCTGCTGGCCTGCATCCC-AGCTCTAGGATCTCAAGGGTTT-----AAGAGGTGGGAAGTCA---------------CTGGG--GTATACACTTCgctattcaggaggctgaggcaggaggattgcctgagctcaggatttatgggccaacctgagcaaaacagtaaaaccctgactcaaaacaaaac
s HiC_scaffold_1 141225631 819 - 233722169 tggtTTTGAGATTTAATTACAGTATAAAATCTACGGTGATCTCA---TTTTACTTAAGAGTTGTAAAGACCAGGGAAATCAAGTGATCTATATCT-CAGAAATAGTTCAAGTAAGCATTTCCCACTCAGGAAA---ATGTCTTCTATCTTGGCATATCACACTTACAGTGACAGGACATAA----TGTTTTCCCTGTTTACTGGGGTACCCACTAATCCAAACTCCTATGA-GCTGCCCATACTATAGCTTACATAATTCCAAGTATAAAAGGAAGGCATTCATTATGACATAGCTGTTAAAAAGACACTGTTTTCTAATCTCCACAGTCTCTCAAAATTATACTTTTGTGATGCACTGCTCTTGTGACCAAGATTGTATCTTTGTCATTTAATCCTTGAGGCTTTTTCATAAGAAATAACCTATGTATGTATCAGCTATGGTGCAACAAAAAccttacaaaaatacaaaaatgaagctTTAATGATTCACAGAAACAAATTACTCAACTGTTTCTTCCCCATGTCAAAATTTTTGTAGCCATCTCACAGCAGCTCTATTATATCCAggtataaaa-----------tgatttttaaaaagtattagtgTTTCTCTTCCTCTAGGATCACCcctcagggcctcatgcacacTATGTAtacactctgccactgaactatacccctggCCCTATGATGTCAA---TATACACGAAGAATTGTGTAGCCAGGCATAGTACTAGTCCTGGGCACTGTAATCCTAGTTACTT-GGAGGTT-------GAGGACTGTTTGAGCCCAGgactttgaggccagcatgggtaACATAAtaaaacctcatctcaaaataggAC

a score=57483
s chr3            96017043 3830 + 160039680 [encoded data, 4638 characters]
s HiC_scaffold_1 141230482 4340 - 233722169 [encoded data, 4638 characters]

a score=4702
s chr3            96023181 145 + 160039680 TTATGGTTTGAGGGTGTCCCCAAGGGTTGACAGACACACTGAAATGCAGTCCCCATTGTGAGGTGTTAGGAGGAGAGCAGCTTACTCTGGCTATGGAGTTTAGAGGAGGGGCTCTC-GGAGTGAGTAGGACTAGCTAAGGTAATCA
s HiC_scaffold_1 113899713 142 - 233722169 TCATATTCTACGGTTTTCCCCA----CTGAAGATTATGTCAAAATATAATTTCCCTTGTGAGGTATTAAGAGGGTGGGAATGTAATCTGACAATGGTGTTTAGAGGAGGGACTTTTGGGGGTTACTATGATTAGATAAGGCCATCA

a score=4474
s chr3            96023214 107 + 160039680 ACACACTGAAATGCAGTCCCCATTGTGAGGTGTTAGGAGGAGAGCAGCTTACTCTGGCTATGGAGTTTAGAGGAGGGGCTCTC--GGAGTGAGTAGGACTAGCTAAGGT
s HiC_scaffold_1 127851953 109 - 233722169 ATATGTTGAAATATAATTCCCAGTGTGAGATATTAAGAAGGTAGAAATTTAGTCTGACTGTGGTATTTAGAGGTGAGGCTTTTAGGAAGTACTTAGAATTAGATAAAGT

a score=6559
s chr3            96023298 858 + 160039680 GAGTGAGTAGGACTAGCTAAGGTAATCAGGTGAGAGCCCTCAGGACTGGGGCTGATGCAAAAGGACACAGGACAGAGGACAGACACATCATATTCTCAGAAAATGAGTGGTTTTTTTACCCTA----------AGA-----TTTCATGTGCCTCTACTCTGAGGTCCATCAAGCAGTTTGAGTTTGAATAAACAAATACTGATGAATTGCACCGATTATT------------AACGACAGGGCTCCCCGCCTTCCAGGGAATA----------CAGTGACTAATGAGGGGAGTCAGACCCGAATACTTGTATTCTGAGTTCCTGATCTGGTAAATCAG----AAAAGATGCCAGGCAGGTAAAGAAAG--CATGCTGAAAAACAGTGCTG-GTGTCTGTAGCCACCCTCTGATGTAGGCTATGCAAACTGTAAGCACAGCACCTAGCTGTggggctggacagatggctcagcagttaaaagtgcttgctgctcaatcacaaggaccagagtttggatctcagcacacacataacaatctgggtgcctaatccatgcattgtaacctcagttctgaaacaggttgagacaggaggagccctag----gttcaagagagatcctgtctcaaaaggataggcagacaataatagaagaggaacccaccattcctttctggcctctacatgtatgcacaGGTGTACCTGGACACACATGTGCAATACACTCAAGA---CACATGCATGCACACATAAACCTTTAAAACAAATAAAACAATTAAAA--AAAGCCTAGATAAAGAGATAGGGGTCTTAGAATTTGATTCACTTATATACCTAACAAAGATGACTATGTCATATTTGACTATGACATAATTAATACAAGTTTTTCTGAGTCTCCTGACATTGATTCAA
s HiC_scaffold_1 141237023 723 - 233722169 GGATGATTATGATTAGATGGGATCATTAGGGTGGCACACTTCTGACAGTTATGTAAGAAAAGAGGGATATTAGAGAATATAGACA-----TTTTCtcggaaaa-----aatttttttacaatacTGTATATATAGAATACTTTTTATG-GTGTGGGTCCTGAGGTCCAT-----AATTTTATCTTGAA-----GAATACTGAAGAACTACACAGAttattccattaaaaataaaagaggtagTTTCTCCCCTGCAGGGGGACAGGGATTAGCCTGGTGACTAATGAGAAGAATCAGATAATAACATCTTCACTGCAAACTCCTGATCTGATAAGTCAGTTTAAAAAGCTACTGGACAAACAATCAAGGATCATCTTAGAAAATGATGTTGCTTTTCAGGAGCTGTCCTCTGAC-----------------------CATCACCT---------------------GCT------TCAACAGTACATCTCTGTctattacagaaaacaaaagcaagaactgga-----agaaaataatct------------------------------------------------CAGGAAGACTTTTAGCATAGCTGCAGA---ATGTTGTCCTT------TAGTCTGATAAT-------------------------TTCAGG---------------------GTGCCAGGGTATTTTTGTAT----CACTGGAGAGGGAAAAAGAATGTTTATCTGTGGGTGTAAATTATATAAATC---TAAGGGCAGAACCTAGATACAGGCATAGGC-TCTTAAAAAGTGGCTCAATTATATACCCAACAAAGATGACTGTGCCACATTTGATTATGAAAACATTAATACATATTTTCCCGAGCCTCCTAAT-CTGACTCAA

a score=18180
s chr3            96024689 1122 + 160039680 aaatagaaaacaaaCAAA-----CTTAAAAATCTCATAACATTTTCCTTTCTATTCTTTTATTCAATGAATTTTAAAAG---ATGTTCCTATGAGACCAGTGGTAAAAATACATAGAAAATCTTTTTTACATGATGA--------------AATACACA-GTTCAATTCTATG--TGCATCTTTTCGTGCACTGTAATTCACCATAACAACC--------CAATTAA-GCAGTCAGAAAATGTTAGAAAACAGCAGCCAGTCCATGCTGTCTCCTGCTACACCAGGGCATCCGAAGAGCCTA----GCTTATGTCTTATTTTGTTAGAAAAA---TAAAAAGTCAAATATAGTATTTCTAGAA---ATTATTTCTATATATGAGCTAGTCAGGAAAAACTTTCAAATGTAGCCCTTAACCTACTTTGTGGATTACTGCACTTCTGCCTAAAGTTTACATTTTT-------------GATAGT-AAGTTCTTTTGATTTTTTTCTCCAG------GGAAAAAAGGCT-----TTTATAGGAACAAAAGCAGTGATTGCAACAAGAGTCTATGAGATGTG------------------------------------------TGCAT--------------------------------------------------------ATCAGAAATAAGCAGTGATTGTGGGG------AAAGACTAGTCAG--AATGGAGGATG-AATAATTCCACCTGAAGGATGAAGACTACCATCCTTTATGTCCTTACTCACAGACAGTG-CACACAAACTACACAGCTAAGGATGAGGATACAAGTGCTCTGGTTTTGCACATCTGCATGACTGCCACAGTCCTGTGATGCTTCCTAATCCTGCAGCACTGTGCATGCAGGTGCTGGGGAAGGCCAGTTGTGTCGAGCACCTTGATAAAACCGATCTATGTTCTAGCAACAGACCTGAGCCGTTATAAAGATGACCCAAATTAACATCTTCTCAATGTGATGGACCAGGGCCAAGAAACTGT------------GGGGCTAAGCAGG-AGTAGAGCCAGAATTCATATTC-------AGTGAATGACAACCAATAAAAAGTTAAATT------------ATCTACTAAATTTATTCTTATGTTTGAATT---------------TTGGCATATTTACTCCTAT------TTACATAATTT----AATGGCTATTGAAGTCTTACTCTTTGCAA--------------AGTACTGTTGGAT--------------------------------------------------------AATGTGAAAAGCTTAAAGACTAAT------TAATTCTTACTTAAATATGACAATACATAATACAATAACTAATGAGAAGGCTAGGCATGACTATAT
s HiC_scaffold_1 141237759 1356 - 233722169 aaaaaaaaaactatgaaaaacgTTTTATATATCTCTAcacattt-cttttccattcctttccttgGTGAACTTTAAAAGTAGATGTTCTGAGaaggccaaaaataaaa-tatacagcaaatcttttttatataatggCCAACGCTAAGTAGAATACTCAAGTTCAATTCTTTGAGTGCATCTTCCTGTTCTGTGTAATTCACCATAGCAACCAAAAGCATTAATTAATGTGGACAGAAAACATTAGAAAACAGCAGCCAGTTCATGCTGCATTCAGCTATACAAGGCCATCTTGAAAACTCAATAGATTTTTATCTTA-AttgttgaaaaaatttttaaaattcatgtatgaTATTTCTGGAAACCATTATTTCTATATGTAAGGCaggaaagcaaaatttcaaaaggcTACATTTAATTGACTTTGAGCACCATTACACTTATGTTGaaaattcaaaagttttattATACTTACAGATGGTAAAGTTCTTATGAATATTTACTgcaggagggagaaaaagagactgcTGCTTTATAGTAATAAAAGTA--AACTGTAACAAGATTCTACTAAATGTGAAATGTGAAAAGTACTTCCTTTTTAATTGCTCAATTCTAGAATGCATGATCacatagatacattttttttcaccAAATGAAAAAGTTGCTTTTCCCCCTTTAAATCAGAGATAAAGAGCAATTTttgagtgagaaaaaaattagctTGGTAACAGTATATGTAGGAATTCCATGTGCAGGATAAAGATAAA------------TCTAACTTATGGATATTGCCAAGTAGGTTAGCCATCAAATTTC-----TACAATTGTTTTGGTTTTGCAAAGTTGTGTTCTTACT-TAATTTTTTG-TACCTTCTAATAttagaaca----------------------------------------------ataaaacaaa---gtgTTCCATCATGAGACTTAAATAAT--CAAAGATGGCTAAAATTAATGACTCCGTGATGTGATGAAACAAGATCAATGAAGTGGCTACGTCAGATAGTGGGTAAGCAGACAGTAGATGCACAATTAAAATATTGCACAGAGTTACTAACAACCTGAAAaaaactgaagttttttttttagcatcaattaaataaattatgtgttttaaattttccaacCTTAAGTCTTGGCATAACAATTGCTATAAATACTCACATAGTTTAACAAATTGCTATTGAATACTTACTATTTGTAAATACCatttacaggaatgctattgatttttgaatgtcaactttgtatccagctacattactgaatattTGTAAATACTGTGTGAAAGTGAAAACTCCAAAGATTAACAAAATATAATTCTGACTT-CATTTTATAATACCCAATAAAGTAGCTAAAAGGaaggatacatatatatatat

a score=24468
s chr3            96029006 719 + 160039680 TTTTCTTTTTAAGGGACTCattaaaaaaaaaaaaaaaaatCACACACTGTACAAGAGTCGCTTACCTATAAATCTCCAAACATTTTCTG-------AATTTCATTATATCTATACAATAAACTGCTAATGCTATTAGATAATTACTGGTTGAAATAATGGGTGATTTATAATCAATAGTAAAATTCTCACATTCAATTACCCAACTGATAC----CAACTGTATATGTTGGGCACTTTATATA-ATGTAATCT---TCAAAAAACTATAAGATTATAATTCTTAACTAGGTAGAATTTGCATATATTTAAA-TTTAAGGTTGGCTTAAGTAACCTGATCTGGACAAGTTGTTTTCATTAAAATTAACTAACCTCTA-ATTAG--TTTTAACTAAA-GAAAGTCAACCTTTTCTCCTGGGACACAAATGGCCTCTGCTAATCAGGTCTCTCAGCTGGTGTGCTGGCCACACTTGGCCAAGTCCAAT-CCTACCCAGACCAGTAATAACCTGTTCTGGCTGGCAGTCAGAGAGCAAATTTATTTTGGGCATTAATGTTGGAAACGCCAAAAGACAGATGCCACAGAAC-------------ACATAAGGAAACTGATATGCTGCTAAAATACAGAATATAGGAGAGGATCTGGGCCCCTCCACAACACCTGCTTCTTTAACCCAAAGCAAGTAAATGATTCAGGACTAGCAGGG-GGCGCATATGTAAGGCGGACACATGCAACACCAAAAGACTC
s HiC_scaffold_1 141243561 733 - 233722169 TTTTTTCAACAAGGGAC---------AAAGTGAAAAATTTCCTTCATCATATAAAAG--AGTAACTTATGAACCTTAGAACAGTTTCTCTTTTCACAAATTCATTATATAGA-AGACTATATATCTTAAGCTATTAGATTGTCATTAGCTAAAATAATAGAAGAACTACA-CCAATAGTAAA-TTTTCATATTGAACTAACTATCCAGTATGGTTCAACTGTATATGTTAGGCCCTTTAAAAATATGGAGcccaaataaaaagaatataagaacgtaatttttaattaattacaattcatttacatttaaaatttcaggtTGGGCTAAGTAAATtgttctgaacatttttttaaaaataaaattaaccaacCACTGTATTAAAATTACAGCTAAAAGAAAACCATCCTTTTATCCTGGGTAACAAATAGCCTTTGTTAATTAGGTCTCTCAGTTTGTGTGCTGGCCGCATTTGGCAAAGTCCAGTCCCCACCAAAAATAGTTACAACCTGCTCCGAATGGTAATCAAGCAGTAAATCTATTTTTGACTCTGATGTTTGAAACTTCAAATGCCAGATGCCATAAAACTGAACCTTAAATGGCATAAGTAAACTGGCATGCTACT-AAATACAGAATATA----AGCATTTAGGGGCCTCCAAAACACCTATTTCTTTATTCCAAAGCAAGAAAATGTCTCAAGCATAGCAGGATAATTCCTATCTAATACTG--ATGTGTAAAACCAAATGAATC

a score=13724
s chr3            96030964 254 + 160039680 tcTGTGATCCTAGTTTTTATTTCTAAT--CTTTGTTACCTTACCTGTCTCTGAGTGTGCTGGGGCCTAAATAAGGATAGAGGTTTTCCTTAAGCCTTCCTTTGATGAGATGATCCAGGGTCTCATGCAGGAAAGGCTGGTGCTGTGTATACACATTTTCCACTCCCTAAAATATGGAAA-TGGTTCTCATGTTATTTGGGGAAGCTAGCAATATGACAGTAATGATACATCAGAAAAGGAACATATACTCAATGGAA
s HiC_scaffold_1 141244377 238 - 233722169 TCAGTGCTTCTGGGTTTTATTATTAGTGTCTTGGTTATCTTACCTGTCTCTGAGTGTGCTGAGGCCCACATAAGGATAAAGGTTTTCCTTAAGCTTTCCTTTAATGAGATGGTCCAGGGTCTCGTGCAGGAAAGGCTGGTGCTGTGTATACACATTTTCTACTCCCTAAACCAGGAAAAGTGGTT---ATGTCATTTTG---AGCTA------------TACTCATAGATTAGAAAA-GATCATACATTCAGTAGAA

a score=16940
s chr3            96032530 579 + 160039680 ACTAGCTTAATACAGTTTAAATTACAAACAC---GGGAAAAAGAGCTGTGACTGGCAGAACTGT---------GCACACTTCCTGGAAGTGACCCGTCACTGCATCAGTCCCGCTCGGCTCCCTGG--CAGTGCAGGCA-CACTACAGCACAGAGGC------AGCGTTTCAAGAAATTGTCCTTTGTGGATTCACTGGGCGGACATAGCTCTACA---------ATTCAGAATATACT-----GTTAGAATCATATCAGCCA-------------------------CACTCAGACTAAAGCT-----------ATACCTTCAGTCCTTTGAGAAACTGCTTGGTAATAGCCACAGCATCTTTGGGACTGAAGAGGTCACTTCCTCTAACCCGTTTACCACCATATTCAACAACTGCCGACACAAGCTATAAAAGAAAAAAA----GAAGAAACAACTTTTTATTGCTTAGGTATCAGGAAGCTCATTTCATAAAAAATAACTTTATTAGGGCAATGAAGACACGAGAGGACGGAACTGTGCA-CCTTGTAAATAAACAGTATATGATGTATTTTTTGTTGGGGCTGAGACTATAACAGACGTGGCTTCTGTGGTTT---GGGCTTACTATATAAATTTGGGATTGGGTTTTGTGCT
s HiC_scaffold_1 141245243 635 - 233722169 ACTACCTAAAT----CTTAACTTATAAACAAATGGAGAAAACTAGCTGTACCTAATGAAACTGTCCTACCCTTGAGTGCTTCCTGGAAGTATCTC----CAGCTATTGACTTGCTCAGCAACTTGCTCCAGTGTGGACAATGGTCCAGTACAGAAACCACTAAGACAATACAAGGA--TGTCtgcttttatttcacttaatggaCATAGCACTACACCAGCGGCAACTCTGAACATACCCTGAAGATACATTTACACAGGCTAAGCCTCAGGAGCTTTAACTGCGTCTCACTCAGG--AAAGCAGACAGACGTCAATACCTTCAGTCCTTTGAGGAACTGTTTGGTTATGGCCACAGCATCTTTGGGGCTGAAGAGGTCACTTCCTCTAACCCGTTTGCCACCATATTCAACGACTGCAGACACGAGCTACAAGAATAAAAGCGGTTGGGGAGGTAGTTTTTTACTGCTTAGGGATCAAGAAGTTTGTTTCATAAACAGTAACTTTATTAAAGAAATGGAGACATAA----AGAGAATTACAAATTcctctaaattaaaaaagaaagacttaTCATTTGTGGGATGGAAGGCTATAACAGAATTGGTT------GTTTGCAGGGGTTAATATAT-AACTTGGGATACCTTTCTGTACT

a score=21301
s chr3            96033655 716 + 160039680 TCAGGTTACCTTCCGATACTTCTCAGCAACACCTTTACTCCTGAGGTCCACTATGAGTCCTGGCAGGCTGTTGCTGCTGTGGCGCTCGTAATGTAGAGCATAAAGCATCACCAGGCGAACTGCATCAAATTCTGTGACTTTCGGATTCTGCAGGAGTCTCTTCACATTCTGAAGAAAGACAGAACCAATGTTAGT--GCTTTCACTTGAATGGCCTCCTGTGTAA------------------------GAGTGGTAGAGACACAGCTCAGCGGACACACACGCCATCATGTTT----CAACTAC-------------AGAATGGCAATTGCTTCTTATTTAGTGGAAGGAC---TAAATA-ATTCCCCATGTAA--TAGCCGTAGGAAAGATGGAGTCAGCCA----CCGTTTCTCTT--------GCCTTTCCCAAGTCATCTCCTTGGTGGCATAAGGAGTGCAGACTACTT----CAACTTCAGTCAGTACAGAGCACAGAAATGACCAGTTTCTGGTTAAAGACGT-----CTTTCTTTTAGTGT--TGCTCATCCCATTGTATCCAAATAGACATGACCTGGCAGAG--TTACACAGGCCGGATTTAATCCCCAAGAAACACCAGAGGTCACAACACATCTCAAGATGGCTGAGAGAAACAAGTGTATGTGACAGCATGCAATCTCTAAATGGGAGAACTTCGGATCTAAGAGGCAGATGCTGGAAGCAAAGGGA--CAGGCCAAGTCATGCCTGGACTCTCTCAGCCTCACATTAAGGGCCTTCT
s HiC_scaffold_1 141245858 759 - 233722169 TTGGGATACCTTTCTGTACTTCTCAGAAACACCTTTATTCCTGAGGTCCACTAGAAGGCCTGGCAGGCTGTTGCTGCTGTGTCGCTCATAATGTAAAGCATAAAGCATCACCAGGCGGGCAGCATCAAACTCTGTCACTTTGGGGTTCTGCAGGAGCCTCTTTACGTTCTGAAGAAAGACAAAACTGGTATTTATCATCCCTTACTTGAGTGCTCTCTTGTATAGTGCCTTagacaatataaaattattgagAGGTAGTGATACATTTGAGT--------------TCATGATTAAGGTAACTACTCTGAAAATATATAGGTCATTAACTGCCTTTTGTCCACAGTAAGAATAAGGAAATATATTCCTATTGTAAAGTAGTTCAGAAAAAGATGAGTTTAATaataagtagtttttcttttaaaatagccTTAGTT--GTCATCTTCTTGTTGAAATaatgaatatacacttttttCTGCTACTTCAATCA--ATAGAGCATATAATAGTTGACTTGC------AAAACTCTCCTGCTTTCTCTTAGTGTAGTGATAAAC-------ATCAAAATGGAGACAAGTTGGTAGAATTTTGCATAGGACTGGGTCAATCTCCAGGAAGCTTCAGAAATAACA--ATTTCTCAACATGGGGGACAGAAACATAAGTGTGTTATAATATGTAATCTCTAAATTgagcatttataattttaaaatgtatgcattgACAGCAAAGGGAGccataataaattttgtttaatttctgtcATCCTCATATTAAGGGCCTTCT

a score=27615
s chr3            96036797 1277 + 160039680 AATACTAGTATTTTCTCGAGTTTTAGAGAC-AAAGTACTGGTGTTTAGAGCAGGTAACAACCATTTCCAAATTCAAGTCACTAAAGGCGCAAGTTCT---CCGAGGCTCCA---------GACAGGACTCTTCT-CTTCACTTCCCTA-------------------------TACGCCACTAACAGTGTGAGTGGAGGT-TTTGTCCAAAGTCAGGGCACAGCTGTAAACAGGCCAGCTCCTTCTTCCAATGAAGAG-AATGCTGTAATAACACAGGGCAGGC--------GGGGACTGCTTTCTTTCTGAAGATATTTCTCTTCACAACATGTAGA-TCTTCATCCCTAATCCAAC----CTCTCCCTCTGAGGTCATGCGTGTGCTTCAGTGATAGCACACTACACTTTGTTT----CTAATGACATTCTTCCTCA-TCAAATTCCTGGTAGTTTGTAT-ATAATTGGTTAGAAGTGGAAGGGATTTATA-CTTAATTTTTAAATGGGATATATGAGC-TTTTTTTCTTGCCATGGTACACTTACTATTCAGTAAAGCAAATTCTATTTCTATTCAGAA---CCTTAGCTCATTTCTTCATGGCACATT-CTATCTAATATCGAGTCA-----------------TCTAGGAGTCAGGGCCCTGGCATCCACTCATTATCAAACAACAGTTCCCTTTATGGACTATTTAAATCACATTG-CAAAGAATTCCTTTGTGGCCAGGAAAGCCCAAACTATCGCTGACTGTAAAACACTA----ACACCCTACACAAG-AAATCTTAAAAATATAGGTCCC-AAAATAGTGATCAGATCATAGAGTTCTTTTCCAtttgtttgtttttgagacaaggtctcatccttagcccaggctggcctcaaactcatggcaatccctttgccttatattcctgagtactgggatcacagcttacagccatgcctagGCAGGAGTTCACAGTTTTTTAAAGTATGCATTATCTTTTCTTTTAAACAGTAGCAAAACTAAAGCTTCATGTAAAAAGGATTGTGATAA-CTTTTCTAACTGATTTCCATATGGCAAAGAGATGTAAATAAAAACAGTAAAGTTGACTAGTGATTAACTTTGAGTCTATCTTTATGAAGG--AAAATGTCAGCCACTAAACTTACACTAAACATGtaaatttaaatttagttaaatataaaattttgtttttatttaGAAAGGGGCAGAACACCAAGTTCATTGAAAT-AACACAGGGATACTTTTAACAGGCTAACAAAACAACGATAAACTATTACTGATGGGAATATTTAAAGTAAGTTGGCTAAGTTAAATGTTTTATATCTTTGCAAAAGATAACTT
s HiC_scaffold_1 141252084 1168 - 233722169 AGTTCTGttattttctcccatttcacAGACCAAAGGACGGGGGACTCAAGTGGTTAAGGATCATTTTCAGATCCACATCATCACAGCC-CATGTGTTTAGCCATCACTCTATATTTCTTCAATGGaactctttttcctcattttcctaacACATAGTTATTGAGTCTTTAGTATGTGTCATTAACACTATGATTTGAGATCTTTGACCAAGGTTAGG----------AAAGAAg---gattttttcttaaatgaaaggCAGTGATATGACAACATGGGTGGGACTAGGGACTGGGGACTGCTCACTTTCTGAAGATGCTTCTTCTCATGATATGAAAAATCTTCCTTACAAATCAAATAAAGCTCT---TTTGATGACAGGC------TTCAATGATAATATGCTGTACTTTGTTTGATTCTAGTGAAATTCTTTCTAAATCAAAATTTTGTTAGTATGTAGGACAATGGGTTAGAAATGGCAGCAatttatagattaattttta---gCAGTATACAAGCATTTCTTTCTTACCACAATATGTTTACTATTCAGTAAAGCAAAACCCATCTCTATTCAAAAAAACCTCAGCTCACTGCTTTATGACGTATTACTATCTAAGGTCAAGCCAAGGAATGCTATGACCCATTTAGGGGTCAGACTCCTGGTATCCAATCACTATTAAACAAAAGTCCCCATTATGAGCTATTTAAATCTTGTTGCCAAAGAAATCCTTTATGGTAAGGGAGTCTGAGTCTAATGCTTACTATAAAGCCCAATAGTGCACTTTGAACAAGAAAACCTCCAAAATGTAAGTTTTGGAAATATAAAGTGGATTATAAA--------------------------------------------------------------------------------------------------------TAgagcttata--------------------------tttttaaaata---acta------cttTTAAAGTGAACAAAAAGTAAAGTTTCAGGCAAGAag--ttataataattttttctaattgATTTCCATATGGTAGA------CACACAAAGACTTTAAAATGGACTAATGACTAAGTTTGATTTTACcgttttaaagggaaaaaaatcaagtgaaaa---------aaataaggaaatttaaatttagttACA-AGACAAACTTGTTTTTAT---------------AGACTGATTTTATTGAGGTAAATATAGAAATGCTTCTCTTAGAGCCACAAAACAACTATAAACTATTATTAATAGGGTTGTTTAAAGTAGGTTGGATAAGTTAAATAGACTATG-----GTACAGTATAACTT

a score=66608
s chr3            96041174 2413 + 160039680 TCCTAACTCTGAGGTAAGCTGAGTTCCATGTTGGTAAAGAAGGGTTATTCGCCTTTGCAGCTTCCTCTGCCCAGCACAGTGCCCCCACCAGTAGGTGCACACACAGTAGGTGCCCACACACAGTAGGTGCTCACACAGCAGGTGCTCACACAGTTACACTGACCTGAAGAGCACTAGAATGGTCATTCTGACAGGCCAGTTCTTGCTCAACTTCTGAAACCTCCAGCAGATTCCGCTCACTGACCAACCGAGACAGTTCCCCGACCACTGTCACGTGCTTTGAGACAGTCCCAGACATCTTTTTGAACTGTGGATAATTTTCAACAAAGGCCTGCCATGGAAG--AAACATTAATGGAAGATGTTGTTACATTCTGACTAAGACTAG--CCATTCGTAAAAAAGACTGTAagctgggcatgatggcacatgcttttgatcccagcactcacaggcagagaggcaggtggatctctgagttcaaggccagcctagtctacaaagcaagttccaggacagcctgggctatgcaaataaactcggtctcaaaaaaaAGGAAAAGATGGGCCATACCCTTATGGTCTTTATAGAGGCCAGTCCTAGCTGAGA-ATGGAAAGAGATTTAACATGATTTATGAT--GGATGTGTCACCATGCTATTTATTAAAGAAAAGGCTCACAGAAAATGTCTCAACTTAAGCAAAGTGACttccagcacttggtagggctgaggtacagttctgccatgggttccagactagtcaggcctacacagatacagtacagtctacagtaataagtactgtatcaaaaccaaaatagaaGGATGCAAACCAAACACAAACAAGCAGCTagctgggcatgataacccccatctggaattccatcacttgggaggtgaaggcaggacctcctaagctccagcatgagttacatagcagttaccagccagttccacaaaactcaaaaacaaGCAAAGAATCACGGTAGAAATTAGATCTGGACTATTCCAGAAGTTATGCCTCCATCAACAGTCTAAAGTGTCATATATAAAGAGTCCTGGTAGAAATGAGACCTGGAATATTGCAGAGATGATGCCTACA---------TCAATAGTC------ATAGGTCAGTCATCCACGCGTATGATGTACCTTCATGTCTGCTATGGATTCCAGCTTTTGCTGCTCTTTTGGTCTCTTCTTCTGGAAGTCTTCCATGAGATTCTTTATATTGCTACCAATCTCGGCAAAGTTCAGGTACATGTTCTGTGAAAATGGAAGTCAGA--TAAAGTTCAAAACTAGTCTTTTTTTTTAATATCATGAGAGAAATGAAGAATTTTAA--ACAGACTTGAAAGATAAATTCCATTTTAATTACCAAGTCT-GATATTAGCCAGGACACTTGTGATGAATACCATTAGTATTCTCAC--TGAGCTACCAGAATGGAGTCAGCTGCTATGACCAGAAGTCAGTATCTATGTGATC----------------ATATGTCCAAGGCCAGCACTAAATCTTT----GCCACTCTGAGATGCAGCCTAGCTGCAGGA----TCCTGCTGTCCTTTCACACAAAGACCCA-ATGTGTCCCATTCTCACACGCCAGTACTGACACT-TTACATAAGAACAACTGAAA--AATT-----------AAAGCACCTACATTAGCATAGAATTCATCATTTTCAGCGGACAGGACCACCTCTCTTAAGTCTTTGCTGATTCCTGGCACTCTGGAAAGATCAATCCGGTTGTTGTTTATGCCCAGTAGTTCATGGACCATGGCCTGATATGTCCACTAAAGAA------GCAAAACAAAAAGAATTGTCAAGTGACAAAACATGGAAATATCAAGTGTTTAGGAAACCAAGAA--CAATGGCATATTTAGTAAGTAGCCTGCTTCACACCAAGTTCCTCTAGTTAGTTTGTATTTTTATTAATACTTTGCTCTCTAGTAAGTATTCAGATTGTCACTTTAATTGCTTAAACACTCAAACAGTCAAAATACTTTTACATTTCACACTTTAGAGAAAAT-GCAACAAGATTAATACTCCTGATAGAAAGAAAGTGACTGCAGCTATCATTAGCTCTGATTTTTGCCTGTGAATTAAGAGCATATTTTTGGCTTGCCAGCTAGGGCTATATTGGTAGTGCAGTTACAAGCTGCACCAGTTCCTGCACGCTTCTGTGGTTCTCTGCTGCCTGAG-----------------------------------------------AAGTGTGTTCTTGCAGATCTGAGTGGTGCTATATTTATCCAGAGAACACTAATATTATCAGAAAAACCCTTGTGAG--TTAATCAAAACACTGGCATAATCAGACACTTGCCT-TGGATCCATTTTGTCTTATGTTTTTAACTGAGTATGAATTGTGAAGGATTGATTTATTACAGCCTTCAAAAATGT-ATTTTGTTTGGTTAAAAACCAGAAAGGTAAAATGCCAAAAATTTGCCTTCTCACCATTATAGAGACT
s HiC_scaffold_1 141256764 2194 - 233722169 TCTTAACTCCTTGTTACACTCCATTCTATGTTGGTGAAGAAATATTGCTTGCTTTTGTA--------TGCCT-GCACAGTGTCTT-------------ATGTAAAGTAGGTGCCCA-----------------------------TCA---AATTGGACTGACCTGGACAGCACTTGAATGGTCATTTTGACAGGCCAGTTCTTGCTCAACCTCTGAAACCTCCAGCAGATTCCGTTCACTGACCAATCGAGACAGTTCGCCAACCACTGTCACATGCTTTGACACAGTCCCAGACATCTTCTTGAACTGTGGGTAATTCTCAACGAAGGCCTGCCATGTAAGAAAAACATTAATGGgagattctgtttttttctggccAAGGCTAGGCTCATATgaagaaggaattttaaa------atgctgggA-GTGTTTTT--------------------------------------------------CTGCTCAGGCTAAA----------------------------GCACTTAAAAC---TTTCAATAACATGGaa--------------ctttgttatatttaaaaagagaaa----aactgataTATGGCAATAGGtgcatctttgttcattcttgggttttgttgt--tgctgtgtattgagacagggtcttgcta-------cctagctcaggt----tggcctt--gaactcacta----tatagtacaggctggcctcgaacttgtggcaattc-------------------------------------tcctgtctca------------------gcctcccaagcac-----tgggattagaggtgtatgCTATGCCCATTCC----TTGCATC-TTTAAAGAGTACAAATAATATTGTGGAA----TGGAAAGAAGCACATAGC--TTATTATGAATTTTCATTACATT---------------ATTCACTAAAGA----------GAGGCAttacagaaaatat------attaa-----------acCAAATAAAATGTACCAAGGTAGAAATCAGAGCCAGAAGATTTCAAAAATGTTGCTTACCCTGAGTAATTCCAAAGTCCCATTTATAAGTCACCTATGTATATTTTTGATTTACCTTCATATCAGCTATTGATTCTAGTTTTTGCTGttcttttggtttcttcttttggAAGTCTTCCATGAGATTCTTTATATTGCTACCAATCTCTGCAAAGTTCAGGTGCATGTTCTGTGGAAAAGAATAATGGAAGCATAATTCATCAATTGTTCTTtcagacaatttaaaaaaagtaaaaaagaacccTGATCATAAACTTAAAGGGCAAATTCCAATTTAATTACCAAATTTGGACATTAGCCAGGACACTAGTAATGAATACCACTATTATTCTTACAAAGAGCTACTAGAAGAGA---------------TGGACATAAACAACTTtgtgatttctaaaaaaaaaaaagttgttataGAGTCCAAATCCAAGTCTTTTGCCTCCACTTAAGCAT---------CAGTAGGATGCCTCTTATCATTCTTCTACATGATATTCTGTATCTTTTCCATTACAACAAGCAAATATTGACCTTCTTatataaaaacaaccaaaaacaattttaaaaacttgaaatcaCCTACATTAGCATAGAATTCATCATTTTCAGCAGACAGGACAACCTCTTTTAAGTCTTTACTGATCCCCGGCACTCTGGAAAGATCAATTCGATTGTTGTTTATGCCCAGTAGTTCATGGACCATGGCTTGATATGTCCACTAAACAAAGaattgtaacaaaaaaaaaaagagtaaatgacaaaatat-gaaatagtaaa---tcaagaaaccaaaaaattgaTAGCATTCTTAGTAACTAGCATGCTTTATGTGAAGAG----TATTTAGttcata---ttattaatattttctgctATGATAAGAATTAAGTTTGCCATTGTAATTGGTTAAACATCcaaa-agtcaaaataattttagatttgacACTTTAGGGAAAAGAGCAGCAAGATTAATATTCTTGATAGAAAACAA---ACTAGATCTATTATTAGCTTTAATTTTTGCCTAtgaattaagaatatatttttgtcttcacaGATAGGGCTATATTGGTAGT-CGGTTACAAACTGTACCATTTCCTGTACACTTCTGTGGTTTTCTGCAGCTTaagtgtgttcttttttttttttaagccagtcaaatttagcagtgggggttAAGTATGTTTTTACAGATCTGAGTGGTGCTATATTTATCTTGGGAacactaatattttttaaaaaa-ccttgtgAGTTTTGATCAAAACATTGGCATGTTCAGAAACTTGCTTCTGAATccatttt-tcaagtatttttaccT-ATAATGAACTGTGAAGGACTGCT---TTCCAGTCTTACAAAATGTAAATTTGTT------AAAATTGGAAAG---AAACCcccaaatttcctttttttttgttttttgagact

a score=71862
s chr3            96045978 4109 + 160039680 [encoded data, 4850 characters]
s HiC_scaffold_1 141261031 4386 - 233722169 [encoded data, 4850 characters]

a score=8684
s chr3            96051066 2085 + 160039680 tcttagaataacaaatgctacag---gaagaacagagaggcagttgccaggggtaaggatggagttggggtag--aagtgaatacggttaataaaagggcaacacaag-gatccttgtagggacagaaaggcggtgctgcttgactgtgtcgcgttaatatgccagatgtgacactgcaccactgttatgtcagatgccacattaggggagactg-----gcacacaggatctctgatgtcatttttataactA-GTATCACTTTAGTTTGTTTTCTG-TGCCAATAGCACAACATCACTGTCTGGGTAAGTTA-AAAGAAAAGAGCTTCATATTGGTTCACAGTTCTAGTGCAA----TGTTTAGAGGCCACATGTCGTGAAAGT------GCAGGGCCCCAGATGGTAAGAGACAGAGACACCTGGCCAAGCTGGCCT-CACAGCTGACCCATTCCTAGGAGGAGAAACTATTAAACATAG----------TTTTACCTGGTAGATGATAGATGCTA------TAAAGGCTCAAG-------TGAAATAAAATATGAAACAGCTCtttataaagttta-aaatattatttaaagttaattttGGCAT-TATTAATTCCTTTGTttttgtttttctgagacagggtttctctgtgtagccctggctgtcctagaacttgctctgtagaccaggctggcctcaaactcagaaatccaccttcctctgcctccaggatgcttgggttaaaggtgtgtgctgccaTTGGCATCATTAAATAGTAATATATGGTGAAAGAAGTGTGTATATCTTAGACAACAATCTAAACCCCCAAAGTTTGAAAACCTCTTAAATGTTCTACTTTCTTTTCTCTGtttttgagacaaggtttctacgtagctttggctagtctgggactcactatgtagaccagtgtggtggagatctgtctgcctctgctcctgagtgctgggattccaggcgtgcaccaccacaccaggctAAGTGTCCTACTTTCTGGGTGCTAGATTTGCTACCTAGTTTTGGAACCAGTGCC-AGACTTTACTAATTCTACAAAGAGCAATGGTGACCCCTAGAGGAGAACAACTGTAACTTCCACAGCAGAATGGAA--------GAAAATCCAAATG-----TAGATGTGAACAGAGTTCATTTCCAGGCTTCCCCTCT----TGCACATCCCCAA---------------GAGATAACTGCTTGGTGATGTATTCTTTCATGACTCACATAAAACAACAAATACAGAAAGTTCCTGTATATCCTTACCCCAGAATAAATTCCTTTCTATA-----------CCTCAATTTAGAGGTGAAACACAGGAGTAAG-----GAAACACTTTGAGGAAAGA--------AAAACATGCTGTTTGACTACTT----------ATAACTTTTGGCTTATAAATCAGCCTTTTAAAATGCAAAGTGAgggatggagagatggctcagcggttaagagcactgactattt-ttccaga--ggtcctaagttcaatt-----cccag--------caaccacatggtcactcacaaccgtct-----------gtaatgggatctgatgc-----ccgttacagccatctgaa----gacagcttcaatgtactcagatacat----------aaaatatatgaataaataagtcttta-----aaaTGCAAAGTGAAATAAAACTTTTATCTAAGCAATGAATGGAAATTGTTATTTTGATTTCAGAAAGAGGGATGATGGCAATTACCTAATTTTCAAAGGTTTAttcaattttattttatgtatattttgcctgcatgtatgtttgtgctccatgtgtatgcagtatctgtggaggccagagatggcactggatctctgaaactggagttccaggtggttgtgagccactacgtgggtgctgggcattcaactctggtttcttgaagaacagccagtttccttaacagctgagttatcagtccatttccAGAATACTTTTAATACTTGGAACACACAAGCTTTTAGGTGATGAGTTCAATGAACTTGATGATACAAGTTACTCAGTATCACAGAC-----------ACATCCATGATTTGAAAAGTGAACTACAGTACTTACAAATAAAATATATGCTGTACTTGGGTCTTCGGAGCTCCTGGATCAGATATTCCACATTCTCCTAGAAAACAAAGAATAAACAAAGCATGAGCAGAGGTGCTTCAGTGAAAGGG
s HiC_scaffold_1 141266234 1914 - 233722169 TCTTGAAGTGACAAA-ATTATAGAATGGAGAACAGATTAATGGTTGTCAAGGTTACTGACTGGGCTAAGACAGCAAAGGAGATGTGGCTAATGCAAAGGCAGTATAAGCAATCCTTGTGGAAAAGACAATGTTATGTAGTCTGATGTAGCAACGTTAATATTTTGGATGTGATCCTGTA--ATTGTCACCGAAGATGCAAAATTAGGGAAAACTGTGTGAATATATGGGATCTCTGTTAT--TTTTTACAACTACATGTTGTCTTATTAGTCTTTCTGCTGCTAATAATACTGCA-----GTCTGAGcaagttataaagaaaagaggtttattttagaaaacagtttAAGGGCCAAAGCTCATGATGGCCTACTTGCTGGCAGAGTTCTAAGGCAAAGCATCACATGGT--GAGACAGGGAGATCTAGCCAAAGaggctttcaaaacaaatgtACTC--AGTACAGTTACCCATTAATCACTGAATGgattcattttttcttaaagattCCATTTGCCCACCGCCTAACATTTCATGATAGGACTGAAATCCAATACGAA--------TTTTGGAGCAGACAAACCATACTTAAAACCA----TAGCACATGTCaatc----tgtaattatttcaaaatgcggaggttaattaaaaaag-------------aaaac-----ctgtagCTT---CTAGccccaagcaaacaaa-----------------caagaaaaactaaGATGAGAGACTAAGAGCCCATTTTTACC-TCCTGGAGTGTTTAAAGGCCAATGAA------ATAAAGTATGCAACAAct----cttataaaatataaaatcttattaaatatgttaattttgGGTATCT---------------TTACTAAATAAT-------------------AGTATGTAGAGAAGC-------AAATATGTATGTCATACAATCTAAACCCTAAGATCTAAAGTCTTTA---------------AACTTTACGACTTCTCAGATGCCATacttaatattaaatt---aaaacattaccCAGACTATACTAAGCCTGCAAAGATCAATGATGACATCTAGAGGAGAAGAGATGTAACTTCCATAGCAGAAGGTAATAGGGCAGGGAAATTCACACAAATCCTAGACTAACATAAAGCTAGTTTT--GACTTCCTCTATGCACTACCCACCTAAAACACTTGTGTACATGTGAGATCCCTACCTGAT-ACTTGAAATTTCATGAATTACAT-AAGTGGCAA----AGTAAG-------ATTTCTTTTCCTGAGATAAGGTTTTGCTTAGTAGTCTAGGTCAGCCTCAAATTTacggtagtcctcctgcctcagctttccaaatgctaggataacaggtgtgcaccaccacagcccaCTTGGAtgttttctatgtaaaataaatctctgctttttttggggtctttt---------------------tgagacgg------ggt--------ctcactatttagttcaggctggccttgagctcactttgtagcccagggtggtctcaaacttgcaatgaccctctcctgcctcagcctcctgagtgctgggattataggcaagagccaccacacccagctaaatcTCTGCTTTTCCAACAAACTCAAGTGTTTCTCCCCCTCCAAAATAAGCCAATTTCTATGCTTCCActcataaatgaaaaatacaaataagtatGTAT------------------------------TTTTATGGAGATAGGACATGAAAATTGACTA--TTTAAAACTTTTG--------------------ACTTCGAAAGCATGT-------------------------------TGAAAggcaaag-------taaaatttaaaaattg--------------cttaaGCAAATCAATGGTGAATGAAAATCATATTTAGCTCTTCGGAAGAGAA-----------------------TGTTGGCca---------------ctaataatttaaaaacaaa-----ttgtgtGATGGATTCAGTGAACTTAATGGTAGGAAGTGCACAAGAAAACATACAGCTGAGATTTAAGTATACGACTGAAACAATGAGCCAATGtacttacaaataaaatatatactgtatttgGGTCTTCGAAGCTCCTGAATCAGATAATCCACATTCTcctatgaaataaata--agacaa-------------ttgCTTAAGTGAAAAAG

a score=59876
s chr3            96056304 2502 + 160039680 TAAAGAGGGCACTGAAGCCAGATTTGCAAGTTGATGTACAAAAGCTAAAAAATGGCATATGAATTTTTA-----GAGGAAGTAA------ACAGATAAAGGACAGGAATAAATATGTAGAGGAATGATAACAAAAGGCCCAGTTGGCTATAATACAGGACGAGAATTGGAACACAGGAATGTTAAATATGTAAAGAAAGACCAAACTGGCCAAAAGAG----GGCCTTTTCATGCTAGACCACTGGGATTAA----CGGAAGGAGTCAGACTGAGCCACTATAGCAATCACGGAGTGACCGCTCACTGACTTTTATGATAAAGACAGATTTGTTCCTGAGGACAGGTGGAACTAAAATGAGAAAGGCTCACGACAGTAA-----GAGCTG---------------------------------TAGGAAAGAGAT-------------------------GTGACGGTGGTGTTCAGCACGAGGTACC-AGGTCAAGCCAGCACTAA--AGTGACTTAGGTTCCCAG------AGTTAGTGGCTTTGGGAATAGCTATTATTCTAAAAGATCTCTAGAAGGAAAACCTGGCTGTGAGGGGGTGAACTGAGGCATGGAAAGGAGAGAAGAAAGGTCACAACTCTGACAAAACAGGATAATTATGATGCCACAAATGATGGTAACACAAATTTATTTTGCCTTCTTAACGCTTTCGGATC--AGTACTCTGCATTTGCCCACAGAGACGGCAGCTCAGTGTGTGTAGTACCTTTGTGGGTCGAAGGAAACAAATTGCTTTTAGGTGTTTCATGATCTCTCGATTTTGAGAATCAATTCGTTCGAAGAGGTATACTTCCTTCTGAAGAATCTCTGACTGTGTGTAGACCATACTCACTATACCAGTCTGTAAAGCAAAAGAACGAACTAAGATTATACTAGTCCGGACTAGTAAAAACATGCATCAATAGTTAAGC---CTTTTGCCACTAATATTTGAGTAGGTAATTTAAATTCTAATATACAGAATAATATTTACCTAATATCCAAAACAGGCTGTAATGTGTTAGAATGAAAACCTACCACTCTCTCTGAACATGAACAACTCAGAAACTTCTAAAGAGGATCTTCA----------------CCATTCCTTTACAATTCCTTTTTTAAAGTTGTGGTCAACAAATAGCCTGTTATTTCAGCTGA-ACCCCAACAATTTACTTTTAAAA--ACAACGTTGAGT--------------------AAAGTCTT-------CCCTGTGTCGC-CAGTAACAATTTCT---TTGC---AGACACTCTTTCAGGTGTAAGAAGTCTCTTGGCACCAGTTAGAGCTGGTTAGACTGCACACCCACTGGGAAAGCATTCTACAACTTTCCCAGTGCCAGACAGACTTGATCATCGTCATCAGTGA---AATGCTAAGTTCTACAGCGGAACGGGGCCAGCAATTCTAAAGGAAGGGAGAGCTTCCTTTATAAATACTGAGCAAAAGCAAACTCACCGTTTCTTTATCCATGAGAAGTACCTTCATGCCCGGCCCGCTGTCCTCTATCATTTTGGAAATATACTGCTTCACAGCAAAGACCACATTCATGGTGGCGAATTGACAGGTGCCCCACAGCCCTTCCCACCCAC-TTTCCTGGCTGAATTAACCTCAGGCCT----GTTGGGTCTCAGCTGCTTCCGGTCGCCAAAGCCTCGGCTTCCGGGAGTCCGGGTAGCTCCGATACTGGGAATTGTAGTTCCTCCGTGGAGTCCGGGACTCAGACTCAGCAGCTAAGCGACGGTGCCATTCCCGACGCTTC---TCGGTAGGGAGTGGAAGG----CAGCCTGTTTC---CCCGA----ACCCGCGCTGTG----------------CTGGCTTCTGGTCCTGAGTAG-------------------------------GGAAGC-GCTTGGCGCACCGCGGGATACAGCTCTCTCGG-----ACACTGTTTGCTGAGCATCTTTTCTGAAGCCCTCGCACGTCATC-------------GTAGCACTG-------------GGCAGGCTGGGGCAGCGGGGTCCCAGGTC----TGTACTGCATAGCAAGTTCTCTGATAGCCCAGGCTAGG---TTACAGAGGCAG-----------------CCCCGGTTTTCTAAAGTATCCAAACAAAGTAGCATCAAGAGACGGCATTTTGTATTTGGTAGGTCATAGAATGAGACTCAACTGGGTTTCCTAAAGAGAGAAGGGGAGCTGAAATTCATC--ACGTTTGTTGAATGAAGAAACAATGGGAACGCTATTTAGAGATGTTGTAGACCTTAGAGACCCCAGGAAGGCGCGGAGCTTCCACCCGCCCCCTACTCAGGACCGCTGGGA-CTGCGAGCTCGCGGCGCCCAAAGTACTGAATTTGGTTGGCTTTCAGGGACGCCGGGTTTCCAGGGCCCCTGCAATGGGCGGGGACAGTTAATTCATTGGGGCCGGAACAAAACCAACT---------TGAGAATTTAAAGGTAAA----CACATTTTTAATCTAAGAAGCAAGAACAATTAGCAATC-AACTGGATCTTAAAG-CTTCAGTTTCCAAAAAATTCAACAGATGACACACTATTATCACACTTCGGATCAA-----------GGTGTTTTGTTCCTCACCTTCTTACAATAGAGAACTGTACAACCAGGAAGAC------AAATAACTGCAACAAATCATTGGCTATTAGTGCTT-CAAATATTTACACCAAAATAATGAC
s HiC_scaffold_1 141268726 2574 - 233722169 TAAAGGAGATACTCAAGCTAGATTTAAAAGGTGATGAACAAAAGCTAACAAATGGCTGAAGAATCTTTAAATAGGGGGAGATAACAAGCAACAAATAAGGGATAGAAATGAGTAGGTCAAGAGATAGTAA--AAAGGCCTAGTTAGTTTGGTGGAAAGA--AGAATTGGGACATACAAAAGTTGGATCCATAAGGATATCCCAAACCAGTAGAAGGAGTTTTGACTACTATATAttaaata---tagattaaaaaacaaaaggaa--aaattgagcTATTATA-----------------------------------------------CGTTCCTGAGCACAAAAGTGAATAAA-TAGCAAAGGTTCAAAACACcgattgtggggctggggatttagctcagcggcatcccTGTaccaatttaggaaaaaaaaacactgattgCTATTATAACATTTAGTGGCAATGGTGTTCAGGGATAGATATGGAAGTTAATCCAGAAATAAGTAGTGATATGGGTCTCTGTTAGAGTAGTTAATGGCTTTAGGAATAGGTGTGAACCTAAGACATCTT--GAAGGAAGAACTGGCTGTTAAATGGTGAACTGAGACATGGAAAGAAGA--ATGAAAGTTATAATTCTAATAAATCAGGATCATTG-------ATACAAGATGATAATACAAATTTATTTGGCCTTCTTAATGCTTTCAGAGCTGAATGTTCTGCATTTGCCTGGTTAGACGGCAGCTCAGTTTATGTAGTACCTTCGTAGGTCGAAGAAAACAAATTGCCTTCAGGTGCTTCATGATCTCTCGATTTTGAGAATCAATACGTTCAAAGAGGTACACTTCCTTCTGAAGAATCTCCGATTGTGTATATACCATACTCACTATGCCAGTCTGCAACGAAATAAAATTAACTAAGGTTATGATGGTCCAGAAAAATTGATATAAGCATCAATATTTAAACAAGATTTT--CATTAAAACTTAACTGGTTAAGATAAATTCTAACATGTGAAATAATATTTACA-AACATTCAAATCAGGTTGTAATgaacaagaatgaaaaac--atgTTCTTCCTGAA----AACaattcataaatttct--------tttccatCGCCTACActtgctttcattcattcattatttct---------cCGTGGCCAGTACACAAGCTGTCATCTCAGCTTACGCCCCAACAGCTTTGCCTTAAAAACACAACGCTGAATGGAAATAACAGGGCCATGTCAAAGTCTTCTAAGTGCTCTGTCTCACATACAAACGATTTCTGGCTCTCATGAGACATCGCTCTGGATAGAAGTCGTCTCTGGGCAATAGTTCGAACC-ATTCAACTGAAAATCCACCGGGCAAGCTTTATACAACTTT-TCAGTTCTGTACAGAACTGACCCTCATTATCTTTACCTTAATGCCAAATCCTACAGTGGAATGGGACCGGTTATCCTGAGGTAGGG------TTCCTCGCCAAACACTGAACAAAAGC-AACTCACCGTCTCTTTATCCATAAGAAGCACCTTCATGCCTGGCCCGCTGTCCTCTATCATTTTCGAAATGTACTGCTTCACAGCAAAAACCACATTCATTGTGGAGGACTCACAGGTGCCCGGCAGCCCTTCCCGCCCCCTTTTTCTAGTCGAATTAACCCCCAGCCTCTGGGCCGGATCGCAGCTGCTTCCGTCTGGTGGCGCAGC-ACTTCCGGGAGTCCGGGCAGCTCCAGGGTTGGGAGTTGTAGTTCCGCTGCGGAGTCCGGAGTCAGTCTTCTTTGGCCAAAGGAGAAAGCTAGTTGAGACTCCCTGGGCTGGTAGACAGTCGCAGAGTTCCGACCCATCGCCAACCCGGAGGTATCGGCAGCGTGGACTCTTCTATTCCTCCTGGCTCCTGGTCC--AGTAGTCTCGACTGCAGCCTGAATGCTGTCCTGTTTGGAACCAGAATGGCGCCTCGCAGCATGGAGCTGACTCAGCTACAACACCGATTG------AACGTGACCGGGATCACTGTTTGTCATTAACGCTTTCTCGGGTGGCAGTGAGGTATAAAGAGAAGGAAGCTGGCGTAATGG---TCGAGGCCATTTAGTCCTGGGAGGGGCGGCATTTGGTAAATCAGACACAGTATTTGCTGAGGCAGTGCCTGAGAAGAGTCTTTCCCGGCTCCCT--GGCTTTCGACTAAGGCGGGACTGTGAGTGCACGGTTT--------TGGGGCTGAAAGTGCGGCCGTATTGATATTCC-GAAGGCAGAA--GCAGCTAAAGTTGAACGagtgtttgttgagtgaatgaacaAAGGGAATCCCTTTTAGGGCGGTTTTTGG----AGAGGCCTCAGATTGA----------------------TTCCCTGGAGCGCTGGGAGCTGCG-GTCCAAGGGGCGCGAA----------CGGTAGG-----------------------GGGCTCCTG--------------------tcccttgggggggggggcaagcaAACTAGCGTGGTATGAGGAGCTAAAGGGACAttggcaaaatttt-atttaagaaacgACAGAAGTTTTAAGTTAAAACTGATCTTAAAGTCATCAATTTTCA-----------------------CTTGTC------CGTATCGAAAAGGCGGGCGGGTGTTTGTTTTCCCGTACCTTTATTTTGGGGAATTGTAAAGTaaggaagataacaagaaacaactgCAAGAAATCTGTGACTACAAATGCTTGTAAATACTTCTACCAAAATAATGAC

a score=20000
s chr3            96082663 635 + 160039680 attaattataaaatta-aaaaCTGCAACATCCAAAGTATGTTATTTTGGATAAACCAAGGCCTGCTAATATATTTATACTTTACCAGCACAACAACGCAAAAAGCAACTAAAAACTCAAGCACTTCTATTTTAGCGCTGGAAGAGAGATTTCTAGATTATTCTGCCAGAGT----CTTATCTGCCAACCACCAGAGAGGAATGAGCTTGCTTCAAATGGGTTTGCAGAAATGACTTCCTTTTTAAAAGTAGCTCTGTCAGCTGGGAGCAACAGCAGAAAAAGGACAAACTTGCTGAATGAGGCTGTGCTGGAGTTGGCCAGAGGGCCCGTCACGGCTCTGTCATTGGCATTCCTGCTGCAGCCAGAGAAGCCTAAGCAAGCGGAAAATCTATAGTACTTTCATCTACATCTAGCTGAAAGTGCTTACGGGAGCGA-TTTTAAGTTCTGAGAGCGA-TAGGGTGCTGGTTCCGACCTCGGGAGAACACAATGGGTCCTGGGTCCTTTGTTTTTTGCACATTCTCTGGTGAGCGCTGTTGTCCTGGCCTAAGCTATGAATTGGTTACAGTGCCTTTTCGCTGTAGCCACACCCTTGTT---AGGGCCATTC----TATATGGATGCCTTTACAACAAACTAAAAGTGCTAA
s HiC_scaffold_1 141312398 610 - 233722169 accaactaaaacataataaaattgcaATGTCCAAGATATAGTACTTTGTACACGCCAAAGCCCACATGTGTATTTTTGGCTTAATCTAATgacacaactaaaaaaaaatacaa-ctcaggctttttaattttagcattggaaaaaatatttctgtaatattCTGACAGAGTGCTACTTGGCTGAAAGCCAGCAGG-----ATGAGCT-GCTTCAAATGGGTTTGCAGAAAtgagttcttttttaaaagtggCTCTGTCAGCTGGGagcagaagcagaaaaagaacaaagttgctGAACGAGGAAGGGCTGGAGTAGGCCGCATGGCCTGTCATCATTCTGCAATTGGCATTCCTGCTGCAGC----------------AGTAGAAAATCTGTAACGCTGTCATAGCCCTCAGACTTAAAGTGCTGATGGGGGAGACTTCTCAGTTCTATCTGCAAGGATGGTATTGGTTATGACCTTCATGAAAAGCAATGGCT-----ATGCAAGGCTTCATGTGTATTTTA-ATTGTATGCTGCC-------CCTCATGGAAGAACTGATCACAGTACCTCTTTCCTGTATC--CACCCTTATTAGCAGGGCCAAACTGTGTATATGAAAGCC-GTATGAGAAATAAAAAGTGCTAA

a score=9286
s chr3            96086284 405 + 160039680 CTCTGTAAATGAGAATTAGTTTATGTGACTTGCTGGCTGAAAGCTTAGGCCCAGAGGAA-TGAGAAATAAGA-AGGTGAGTTTTACAGAGGTGGAGGGAGGTCAACAGGAGGAACCAGGCCTGCAGGCTCCCAGAATTCACTTAAGCTGGAATCAGCAAGCATAAAT---CAGTGAGCACAGGG---CAGG-GCCTGTCACTGAGAAAAGTCTGCTGTAGGCCTGGCCCTGG---TCACCTAAAATATGGTGGCACATTCCTCTATCAAGTCACTTGACATGTTCTTTAATTTATTCAACAACTATCCTTTAGATTCTTCCT-------------GTTAAGCCCA-AGT------------GAAAAATACAATAATTTAGTAAGGGAGACAAGAAA---GAAATACAATAATTACCAATACAA---------GGCTTTGAAAAGTTGAAGTAGGG
s HiC_scaffold_1 141316530 449 - 233722169 CTCTATTAACGAATATTAGTTTA----AATTGTGGGCAGAATCCTTAGGTCTTGAGGAAATGAAAACTAGGATGGGTAAATTTTATGGGGGTAGAAGGGAGAGAACAGGAGTCACAGGTACCCTGGGAGAGCAGAGGTGCACCGAGCCAGAAATGGCAAGAGCATGTTCACAGAGGGCAGAGAGGTGCAGACGCAGGCCATGGAGAAGAGGCG--TTCAGGCCTGGGCTCGAGCCTCACTTAAAGTGCGGTAACACAGTGCTCTTCCAAGTCACTTCAAATTTTCTTCAATGTATTTTACAACTACTCTTCAGATTCCTCCTTGCAAGGCACACAGTTAGGCACACAGTGAGGAAGTCGCAGAAGGAGCCAGTATTTTAATAAGGGAAATAGGAGGTGTGAGGTCTAACAGTCACAGGCATAGAGAGACTGTGACATTGGAGAGTCAAAGCAGAG

a score=6303
s chr3            96092091 190 + 160039680 CCTTGTTTAGCCTTCTCCA---GGCCATCTGGTCCCCGTCTTTATCACCT--CACTCTAAACCCTTTATCCTCTTAACTGTCCTCTTCCTACTTACGATCATGTCCCCTCCTAAGCCTGTGGGCTCCTTTATTCCCTAGAACGCAGAGCCTGTAAACAGGGTCACACTCCTGCCAGGAGAAATGGTTGCTGTGGC
s HiC_scaffold_1 141348960 190 - 233722169 CTTCTTTTAGCATTCTTCATCAAGTCGTTTGTTCCTAGGCTTTATCATCTGCCACTC-AAatcctttatcttttt---tattttcttccta-ttgtGATAACTTCCTCTCATAAACTCATGAGATCATTTATTTTCCAGAGTGCAGAGGCAATAATCTGGGACCTACTTTTGTCAGAAAAATCTGTTACCTTGGC

a score=11034
s chr3            96096157 444 + 160039680 CTGCTTTGTCCATTCTCTATTCTAAGGCTCTTCTAACCTGCCTTCTTCCTTTGTCATTTTCCTGTTTTCCCTCGGAC----------CTCAGG------AAGGCTA------------GGACACTGGTTTTAATAAATAGGACACCACAACTGTGTGTTCCATTATTTCTCTCTTTGGATCCAATTACTTCTACTAATTATGTGGAA----TCTTATTAGCAAAGTTTACTCCTGGGACGCCTGTCCGTGAAGG---------GTGTGGGCGGCAATAAGTCTGGGAACAGACAGG---TGTTTTCTTCAGTGAGAAAAAGGCT------------GTTCAAATGGTTCACCCAGATTCCACTCTGTGGACAGAGGGGCAAAGACTTCAGGGAACATTCACCTGGGGAAGGAAGAAACGCTGCTTAATGATCACAGCTGGACAGGAGCAGAAAACT--TCATGGCCTGGGCCC---ATCCCACCATCCTAAGTGGAAGGGAAATG
s HiC_scaffold_1 141355060 494 - 233722169 CTTCATTATTCTTACTGTACTGTGAAACTTCTGTT-CTTgtcttttgtctcctttttttccccctcttttcttGTCCACTACTTCCTCTCAGGTATGCAGAGGCTACCTGTTCTGCACAGATTCTAGTTTTTCTAAATAGGACATTAAGCTGGTGTCTTTCATTATTTTGCCCTCTGATTCCAACTGCCT-GACTAATTATCCAAGAGCTCTCTTATTAGCAAAGTTTGCCCGTGGGAAGGCTGTCAGGGAAGGAATACTGAAGTGTAGG-------AAGTGGGAGGGAAGACAGAATATTCTTTTTTCACTGAGGAAAAGACTCCAGAATTGATTGTTCCCAGGATTTGGCCAGACTGCACCACTTGGATAATGGGGCAATGACTCTAAGGAGCCTTCAACCAGGGAGGGAGGAACTGCCACTTACTAATCACAGCAAG--AGGAACAGAGAACCCACCATGGGCCAAATCTCTGAGCAGACTATTTTagatgaaaggaaaatg

a score=27301
s chr3            96097940 2188 + 160039680 CAGCCAAGG--CAGTCCCTTCTGTTTCTTTCATGAACAAACACCTACAGTCAAAGGCTGCCTGTGTTGGTCCCGTACA-TCCACCCCGGCTGACAGTTCATTTCCCTGTGCACAGATGCCACGAAGGGCCTATGTCAAGCTGAAAAAAAATGTGACTTCCAGCTCCTGGCCT-GATCGTGAAAACTTCATAAGCGCAGTGACT-----------TGTCATGCACACGGTAGACATGGGAAATGGCTGCAAGATTCAAATATACTGTATTAATTTACATCTTGCTGAGGACTTACT-GTTCGCGTGGAAGGCCTAGCATAAACTGGCCACTGCTTGATTCTATGTCATCCATTGTCAGA-AAAAGGGAAGCTGC--------CACCTTGTGTGACCT-------GAGGAAGAGCTTTCCTTGGGGTAGTGAGTCC------ACAAGGGT---AGGGCTGGCACTGCTGATTAGCACTTGGGACCTCCTTCTACCAGGCCTCATTATTCAGCTC-----------------------------GGTTTCTCTTCCTCTCACT--------------------------CAGAGTCTCACCAAACTCTCCTCAGATCTGCC--------------------------------------ACACTCCC---------------------------CCTCCTCCTCCACAGACCAGCAGCAGCATTAGGAATAG---CCACGA-----TGCTC------CAG-----TATGTCACTCTGGAAAGCAACCATTGACAACACTAAGAAA-GCCTAGTAAATGCCAACTAGATAGAGTTCCCATGC------------------------ACAAAATAAGCAT-GCATTAATAATTTAGGAAAGCATTCTTAGTGTACAGTAGTTTAA-CATTAGCAAT-AAATCACTTTTTTTTTTTTACAGGAGCT--CAAG------CAAGTACCCGGAAGCAGCAGTCAGAGTTTGATGCAATCAC--------TTCTCTTCTATGCCCC--------TGAATACGCTTGATTTTGGCTTGCTTCCCAGTGATGACCTAGTCAGGGGCCAGAGTGACTTAGTCATT-CGTTCCTGGGCCTCTCCTCATCG-CCTTGGCTAATGGGTTAGCAGACTTAATTATTTGTTTCCTCC--AAGTCTGGGGGTGTGTCACCT-GCAAGGTGGGGATGGAGCTGAGAGCTGACCCACCTGGTTGGCATTCCAATCGGGTAA-GGTAGTGCTTACTCTCCCCACAGCCTAAGGAACTGGCTTCTCTTCTTTACCAACCTGTCGGCCTCTTCTGGCCTGAAGAAGTCCTTCTAATATCCTCAGGGGATTTGTCAGGACCTGAGTAAGAACACACCCAACTCTGCCAAGGGCTCTTCAGTTAATGTCCTGTCATAGCTCAACCAGGGATT--GTGCTCACACTAATTGGCAGCTGGTAAGTCTTATTGGCCATAAAGT-------TTGATCTTGGGTCATTGCAGGGC--------AGAGCTGTTCCTCTGAGGGATT-TCCTAATGTCTAATCCCGGGAAAGTCTTTAGAATTGCACAAAGGTAATCTAGTGCCGCTCACTGACAAACTCTTCTTCTGGTACATTTGTGCATTTGTTCCTTATTATTTTTAAATCAATGAAAGAGTTAACTATGCACAAACACCTGTGGAAATAGACGACTTGAAGCAGTTGTCAAGTTCCAACCAATTGGTAAAGACATTCA-CAGTTTGGAGCTTTGCATACAGCCCTTTAA------------AGGGAGTGGTAGAGTTTACACCTTAAGCCCTACATAGAGAGAACACATATCAG--------------CAGAGGAGGAAGTTG--AGAGTTAACACAGTGGTGTGCTGAGGT----------CACATCAAACTGGTGCTTTCCCCAACACCTTATTC--------------ACTAAAATCACACCACAG-------------TAGGACA----------------ATGTAGGT-----------GCATATGTGCACCTGGAA-----------ACTAGCAAG-TGCCTTTTCCC-------------------------------------------------------CATGG---------AGAGCTAGCTGTTAATGCTCGCTAGCACACCATGGGTGGAGAAGGAAGAGGAACACAGAGGTAGAGATGGAGATGAATAAACTCATGTATTCTGGAGTTAGAACCAGGCT-GAGCTCAGCTGCATAGGAGC-------TTATAATGGAGACTAAGGAATTCTGCATTTCTTT-----ATAATGTCAAGGAACTAATGTCATCTAatcaattgaggtgctttgagttttaagtcacag-------aaatttaattcaaatggcttagacaataagtaagatgtattagcttatgtaacaaaaacttccagtagagccacggcagtgttggttaaatcagtcattcaccaaaggcccaggttcttttgcttttcctctgctatcttcTGAGTCTGCAATCAGcacaacagttca----------------aacagcaggaaaaaaa--tactttcttcatgtctctttgtaagaacaaacactcccta
s HiC_scaffold_1 141358041 2498 - 233722169 CAGCGAAAGACTAGCCCCTCTGATTTCCTT-----AGAGACGACTGCAGTCAAATACCA----TACTGTCCCTGTACAATTGACACCAActcccatctttcttttttg------gagaagATGAAAGACAAGTGTCAAGT---AGAGGATTTAGACCTCTAATTCCCATTCTCGCTCATGGAAACTCCCTGAGGTCAGTGAttgcatttttgcattttttacaaGTGTTGAGCACTTAAAACCCCCCAACAACTCACATAT--TGTAGTAATTCCCATCTTGTCCAGTCCTTGTTCAACTACATAAAGGGGCAAGCA------GTCTGGTGCTTGATTCAGCACTATTTACTGGCAGGTAAGAAGGGAGCTGTGGTTTGTGCATGATTGGTGGCCCCAGGTAAGAGGCAGAACACTATCTGTGGGAATCCAGCCTGCGTAAAAAGTGTTTCAGGGCCAGTACCTCTGCTTGGTACTTAAGACCTCCTTGTATCA--TTTCATTGTTCAGCCCCATAGTCCTCCTTTATCTCTGTTACTatagttgtattttctttttattttttactttacattatttttttgagacagggtcttaccacatagtcc--aggttggccttggactcatggcAAGCAACCAAGAGCACAGCACCGAGAcactctttttgtgtgtgtgtgtgtctttttttgtctttttccttt--------ttatcggtaccagggatcgaactcacgactgcctgcttgcaaggcaggcgcttatgtcgct---gagcttaatccccagccccaccgaGACACTCTTAATAGATGCCAGTTATGTATAGTCACCCAGCCCCAGAGCACTCTGAGGCAAGGAAACAAGAT--GCATAGTATTTGTAATGTAAGAAAGCAGTCTTTGGGTCTTTGGGTTgaaacaatagaggtcaaagtggataattaattttaaaaaagttagcAAGAGAGATCAAACACCTTGCAGCAACAATCAGAGCTTGATTCAGTCTCAGTCTTTTGTCTCTCCAATGCTCTGTCAGTTGTTCATA-GCTGGAGTTTGGCCTGTCTCCCAGTGCTGATCTAACTGAGGGC-AGAGGGACTTAGTCATTTCACTCCCAGGCCTCTCCTCACTGTCCCTGACTAGTGTGCTGACCCACTAAATTATTTGCTTCCTCCTCAAGTCTGGGGATGTGTCCCCCAGTGAGCTGGAGGTGAAGCTGATAA-------ACCTTACTTGCATTCCAAACAGGTAAAGGGAGCATTTGCTTTCCTCTTGGCCTAAGAAACAGGTTTTTCCCCTTTACCTACCTTTTTGCCTCTGATAGCCTTAAAAACCCATTCTTATACCCTCAGGGGATTTGTTAGAGCCAGCAAAGGCGCACACCCAGTCTTGCCACAAGCCCTTTGCTTGGAGTCCTGGCTCAGCTCTCTTGGGGAGCCAGCACTTGCAGT-ACTGGGAGCTGCTAAACCCTATTTATAATAAAGTGCCTCCAGTGATCTTGAGAGCTTCTAGGGCCTGGAGGTGGGGATTTTCTTCTTAGGAGTTCCCCTAATGCCTAATCCTGGACAGCTGTTAGGAAGTGTAGGAAGGCAATCTGGTGTCCGTTGTTAACTTTTATCTCTACtggtattttt----attattcctctgtttttctttaaac----------tgaCTTATGAACAAA----------------------------------AAATTCCAAC----TGGTAAAGTCATTTGTTAGTATAGGGCTTCAtatgaaatctttttcttttttttcttttggtggtcctggggattgaacccaaagccttttgcactgag-ctacatccccgatactttataattttttaaaaaaaatttgttagttttgagacagggttttgctaaattgcccagggtaggCTTCAACTTGCTACCCTCC----TGCTTTGGTTTCCcggagtgctggattacaggcacaccATAGTGCCTGGTTTCTCTAGGAAATCTTTAAGAGGAAGTGATACAGGTTTGGCCTTGAATCTTATCTCCATTGAGAACTCATAGATAGGTTAGCAAGTTGTCTCTTACTGTCTCTCTTACTAACTCTTTGTTCAGTTTCATTACATTCCTAGGAATATTTGCAGAATGGAAATTAGTCAGGGCTTACAGTTTAGGGCTTTCTCCCCACCA-----GGTAAAGGAAATAGAACACAAATGTAGAGTTGTAAATTAACAAACGGCTATATTCTGGAGTATAGACCACACTGGAGTCAAGTTGTATAGGAGTCAAGTTGTTACAAGGCACGCTAAAGAATTTAGACTTTATTCTGTAGATACTGAGGAGTTATTGATGAAAtcttat---------tgttttttattataagtaatagaacaattaaaattaattcaaa--------acagTAAG------GTAT---CTCATATAACAAGAATTTTAAGTAGGACCTCTCCAGGGTTGGATACTGTAGTTATTCACCAAAGA-TCAGATTCTTTTAAACTGTTTGTG---TCTTTTG--------ACCAGTGTAATAGCTCATAATTCAACAATGtacaacagcagaaaaaaaaatttccttctccatgtctctttaTAAGAATCAATCTTTCCCA

a score=141582
s chr3            96101773 6351 + 160039680 [encoded data, 7400 characters]
s HiC_scaffold_1 141362130 6551 - 233722169 [encoded data, 7400 characters]

a score=6091
s chr3            96111197 1143 + 160039680 CCAGTTGCTTCTTCTTTCTTCTTTCCTGTGTATTTGTTTTTTTCTGTTCTGCCTCATCCAGTGTCTTTCGGATGTCTCCCATCTTATAAACTCTGTCCTAAGCACTAAAGATATGGAAACAGGTCAGAAAAATTCTTACTCACAAGAAGCATAAGAGTTTAATTAagcagttttcaacctgtgggttgcaacccctttaagggttgtatatcttatatcctgaatatctgatatttatattataattcataacagtagcaaaattacagttaatgaagttagcaacagaatagttttgtgcttgggcgtcaccataacacgaggaactctattaagggtcacaggatcaagaaggttgagaaccacAGGTCTAGTTGAAAAATAGTAAATATATAGATATGGTGAAGTGTGATAAATGTTGTAATAAAAGTTACAGGGTAGAAAGTGGAGGCCCACAGATCAGTTCTGCCTTGGGCATGCAACAATGGGACAGAGCCTCCCAGAGGAGAGGATGTGCCCAT---------GAATGGTGAGCTAAGCACATAGCCTACAGGAGACCAAGGATAGCACACTTCTAGGCTGAGAATAGAGCTGGAATAAAAAAAAAACTTAAAGGAATGAAATAGACTGTTTCATGTGGTATGTAA----GATATTACGGGGGGCAAGGCTGGATTATGTGGAGCTTTACCTTCTGTCAGTCTGTCCGTTCATCCATCCATGCATCCAtttgttt-----------------attgaaatggaatttcgctctgtaatccaggcaggcctgga------atttaagtacacaggcttgttttgaa---------------cttatagctcttctgccagcc-----------------tcctaagtgct----cctaagaacagatatgaacctccatgcctga-------------------------cctgtgtttattttgtggtgctgagaattgaacatagtgtttcatgcatgctaggcatgtgctctaccaTTGGAGAACGTTATCTTATAGTGCAGTAAATGATGAGGTAATAAAGGATTATAATCATATGGGG-----ATAAGTTTCAAATCCAAGAAAGGTTATCTCAGTGGTATATAAAGTGTGCTCTAGGAGAACGACGCAAAGGACCTTGTAAT-------TTCCTGTTTAACCAGAGCA--TATTG-----------GTTGGTGAATTTTATAGAGAAAATTGGAGGAATTATGATGCTTTCTT
s HiC_scaffold_1 141371537  984 - 233722169 ccattttcttc--ctttcctatttcctGCTTGCTTCTCTTCTTCTA------CTCATCTAGTATCTATGGGATGTCTCCTATATTTTCAGCACTGATGTAGGCCTGAAAGAGATGGAAATGAGTCAAAA-----TCTACCCAC--TAAGTGTGTCGGTCTA-------------------GTGGGAGGAGAC---------AGATGTGTA-------------------AATATCTAGAT--GAACTCAAGATAATAGT--AGCTAAAGTTAACG------------------------------------------------------TATTTAGGG--------------------------------------------------------------GGTAAAGTGGGA---------------------------------------CCCAAAGGTCAGTTCTGGCTTGG----GCAGAGATTGGAAGGAGCCTCCCA---GAGATGATATGTACAGCTAACTCTAGAAAGATGGGTTATGCAAATACCCTCCTGAAGGCTGGGGTAAGTA-----CCAGGCAGAGAAAATAGCTTGAATAAAAG------TTAAAGGAGCCAGGTACCAtggcaca---agtctgtaatcctagcatttgggagactgaggcaggaggattataagtttGAGCCTTGCTTGGGCAATTTg-----------atgtaagaccctgtctcaaaaaaaacagaaaaagctgaaaaaaaa---------gaaaaacaaacaaaccagggtCACTtagttcaattttcagtactgtttaaaaaaaaaaaaaaaaaagcttaaag--agTAAACCAGCCATAATTTTCCAGGTAATTTCTAAGTGTTATAACTGGAGGATGAGGTTGAGGGGCAAGGGCTAAAGAAGCAGGCGAGGCTAGAGAGCTTTATCTGTCTGTTTCTGGATGCT--GGATTGAAC--------CCAGGTATCCTAGGCATCCCCTTTCCCACAGGAGTGCTTTATTTTGTACTGCAGCAAATGATGAGCCATTTAAGTATTAAAAGCATCTAGTGATTAAATAAGTTTTAAGTCCAAGAACAGTT-TATGAATGCTGTATAAAGTGGGTTagagaggaacaaagcaaaaaccctTTCAGTAACATTATATATGCTGAATAGTAGCAAGTATTGAGAGTGGCTATGTTAATAAATC------AGGGAGCTGCAGGGACTAttgtgctttctt

a score=7622
s chr3            96112325 234 + 160039680 TTATGATGCTTTCTTA-------TTAATTTTCAAATAGACTACCTGAGGAT---TTAATCAGAACCAGAGTAGTTTT-----GATAGCTCAGTGTACAATTGAATTTTCAGTGGCTGGCCTTTGGCAGGTGATTAATAAATGTGAGGTCACCACACTGTTTTCTCTCCAGCCCTATTTCAGTGTTTGTTTCCTTCTCCCACCTTGTGTTGTGCTAGACCACAGAATGGCTTATTACCTCCATTCCACTG
s HiC_scaffold_1 141372798 236 - 233722169 TTATTATGCTTTCTTAGTCTTCATTCATTTTGAAGTAAAATATCTGAGAATCATTTACTCAGAGTCACAGAAGTTGTTTAGTGAGAACTTGGcctagaatttattcttcagtGGATGATATGTAGCAGGTGATTAATAAATGTCAGTTTACTGATCTATTCTTTCCCATATCCCATTCCAGTGTTTTTTTCATTC--------TGCATTGTGCTGAA----AGAGAAACTTAATA-CTCTattccagtg

a score=24979
s chr3            96113302 509 + 160039680 ATGGGTACCTTCTCATG---GCCTTCCTCAGATCTTGACTAACTAGCGATTTCCTTCTGTTTTCTGAGCTGTCAATGTCTTCCCCAGAGAAGGGCTTTGGTTTGGAAGCTGTCCACTTCAGCAGAGCTGCCAATTCTTGATTCTTTCTCAAGTGGGCAAGGGTACATTTTGTTTTTGTTTGTGAGT-TCTGGGGGAGGGGAGG----AAAGGAGGTACAGAAGAGCTACTCACAGTCAGTCCTTGTCTGGAATCCTTTGTAGCTGGAAGTTTCCTTTGCTTTGTTTTGGGGGAGATGACTTGGCTCCACCGGCATTTAAGTTATTTGGGAAGGTGGTTCTCACTCGCCTCAGCTATCTGCTTTGGGATGACAATAAATACTTCATTCTTAGCCTGTATTGTCAACCACTACTCCACCCTGTTCTAGACACTTCTTGTGTATACTGTATGAAGTGTTTGAAGCT---CTTCAGCCTA-----AAACAAGAGTCACATGTTCCCTTAAAACAGTGATTTCAACCTGC
s HiC_scaffold_1 141374151 505 - 233722169 aTGGATGCCTTCCATTGCAGGTCttcctcaaattt------------------attctttgccaAAGTTTGTTAACATCATCCTTATAGAAGGGCTTTGGTTTGGAAGTTGTCCACTTTAGTGGAGTTGCCAATTCTTAATTCTTTCTCAAGTGGGCAAgggtacattttgtttttgtttgtgagtgtttgggagaaaggaggggagagaggaggcGTAGAAGAGTTACTCATAGGGAGTCTTTGATTGAATTCCTATATAGCTGGCAGTTCCCTTGGCTTTGTTTTGGGGGAGATGACTTGGTTATACTGGCATTTAAGTAATGTGGGAAGGTGGTTCTCACTCCTCTCAGCTATCTGATTTGGGATGGCAATAAAAACTTCCTTCTTGTCCAGTGTTTTCAGCCCACACCCCACCCTGGTGCAAGTGCCTCTTGTGCATGCCTTGTGAGAGATGTGATGCTTCCCTTCAGTCTCCAACTGAACAAGTAATAAGTGTTTCTCTGAAGCA--GGTTCCACCCTGC

a score=29495
s chr3            96117305 2857 + 160039680 TCTCATTCCAACAATCTAAAATTTCTTCTCTTTCACATCATCAT-ATACTTACTT---------GTTCATTATGAAAATTAAGATTCTGTAAATTTCTGTTGGTATTT----TTTTGCTGAGTGGTGAAGATACATTCCTGTCTCCTGAGCATTTTCTGTATACTAGGCTCTGGATA-GATGCACCGAAGTGACTGTAAGAAGATAGAACCCAATAAATAAGCAA---TAAGAGTAGGAGGCTAGGTCCTGTGGGAACCCACATTCTGGGTTAAATAAGATTTGGTTATACACACACTTGAA------ATATGAGAAACAAATATAGAAT-------ATGTAGCATATATATCACC------ATAGAGCATTTTAGAACT-AAAGGAATTTTATATGTTACAGTCATTTTCTAGTTGAGGAAAACAAGGACCAGAAAATTTGATTACTTGTTCAAGGCAGGAGTAAACAACAAACACTATTTGTATATTTGCTTTCTGAAAAGTTAGGCCTCTGGTATAGAATTATACACACTAAGA-----AATTAGTAATTAgggcttgggag------ataggtcacttcttcaagtgcttgtccgtcactcgtgtgaggccctgagtttggtcgttagaagccatatagaaaagctgctgtggtggtgctcattgcttgaacccctg----agctgggggcagggtacaggcaggtccatccctgggtcttactgggcagcccaactagcatacaagtgagttccagggcagtaagagccttgcctcaaatcaaataac------aagtagacaaataataaacaaagtaaaatggtatctaatg---tagtcccgtggcctccgcatacacaAGCATGTGTGTACCTGCAACACACAGTGTGCACCTGTACAAAGAAGTTGTGAGTACTAAATATTTGCAGGA---------GAGATAAGGTTTTCAGTTAGTACTGAAGTGAGAGTTGAAGTCAGTTGTTTGTTTGCTT----CTAGTAAGCACTAGAGCTCAGCCTGGAGC----TCTCCTGACTGTCCTTCTGTGCTCTCTTTCACCGCATCATATTGCTTAGGAGGAGGTAGGTGGTGGTTAAAAATGGAGATCAGATGCCTGGGAAAT-GTAATGGGAAGTTAAAGACCACATTATGATGATGTCTAACCACAAGCTGTTTCAGTTCTAGATAGGTTTTCTGTGCACTTAAACACTAA--CTGGATACTTACAGCTGTCATGCTCAGAATGCATTGTAACA---------AGTAATTAGTGCTG---TCTTTTGAGA-----------------------------------GAAC---------------------------------------------------------------GTTCTTTGTATTCAAAGGGAAA---GATTCCTTTGGATTTTGAATTTAAATGCATATTCTC-TCTGTCTCTCAGTTTTAAAGATGAAATAGTTTTTCCCTTGCAAGTGGGATGGCTGCTTGGGTTAGCAG-----GCTGTAGGCAATGTGG-----------TTTTGGAATAGAGGTAG-----GTCTTAAACT-CAACTCTTTCTGGCATAGTTGTCAACAGGTAAGAACAACTTACTT---TAGGTGGTCTTACCTAAAAAGGGAAGTGA-----GTACTGTGAAGCAGGTGGATATTTATACTAACAGGTTAGAAGCTTGTCGTTGTGTTAAAACAAGTAAGCAGACACATTAAGATAGTGCTCTTCCTCACCTCCTATGTATTCCTTTTGGCCACGGTTTTATCTAAGGTTGACAGATGCTCAAGATTCAGAATAACATTTTATGAAT----CACCATTTTTTATATTTCTACTGTAAGGGTCTGACACTGTGTGT------------------------TTGCTGGGTTTTCTGACCAGGTCACCTTC--------CCTTCCAACACTTGGCTTGTAGGACCTCTATCCCATTTTGTTCTT--------TGCCAGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTGTTATAACCTCTGACCTGGCTGGAAAATAAAAGGAAG--ACTGTTACTGTTTGATAAT-AGCTCCTACCCTGACTTAAACCTGGTGCCTTATAGCTCATTTATTACCCTAAGGTAGATATTCTTTTTTTTTGGGGGGGGGGGttgagacaggatttctgtgtagtcctggaactcaccctgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctctgcctcccaagtgctaggattaaaggcgtgcgccCTG---CTTAAGGTAGATATTCTTAAACACAAATGATTTAATTC---------------AAAATAGTCACTGCTATTG---------------------------TTGAGGTACTGTTAAAGGTGCTAAGAATACTAAAG-----------TATAAGGTTCTTGCCAGTGTAATaaagaggctaaagtacttgcccaaggttacaagcagaagagtgatagagctgggatttagatgcagttttggtggattccagagGTAATGTGTGCA-------TTAG--------GCTGTCATTTATATACATTGCACAATCTT------------------------TAAATATGTAAGTCAA---GACATAAAAAT-----------------------------AGGTGGAATCTCCCA-----------------------------------------------------------AATTTCTTTGTTCTAAAGA-------CTCTTGATGAATTCGAGAAAGAAATATGTCTTTGTGCTGACAAGCCCACCTGCCCCATGTTGCCTTTTCTCT-----CTCCCTCACCACTCACTCATGCCTGGA--GTGAACTGGACAGTAG----CCCGCTTTAGACTGTG--------TTGAAGACTGGGAAGATTTTGTTT----CCTTGGCTTCCTGAAAGTTTCT--CTCCTTCTCAAGTTCTTTCTTGTCGCTCAGTAGTGAGTAATGCGCTTGTGACAGTGCCATGTAGT----CTCCATGGGATG----TTTGTCTTTCCCTGGT----GACTATGTGAACAACAATACTTTGCCTACACTTACCTTCCTCAGTTTATTCAATTAGAAAATACTTTCTGTA-TCACAAGTCTAGGAAAGAGTTTTGAGAATGGGAAGAACATAAAAAACGGGGTGTTCTCTGTCTGGCCCAGATCAGTTTTATCTGTATTCTAACTTGATTCCTTACCTTACATTATTAAAGAGAG--------------------TACtaatttaatttaatttatttattttgatcttttgagatatgtttttttctgtgtaa
s HiC_scaffold_1 141378540 3305 - 233722169 TCTCATTTtaaca--ctaaatttttttttctctcacatcatttttgtaattttttttggaaacagttcATCATGAGAATTAAGATTTGCACAATTTCCCTTGATGTTTGCTGTTTGGCTGAG-----ACTATAAATTCCTTTCTACTG--------CTGTGTGTTCAAATTTGGGCAAGATGCACTAAGATGCC---AAGAAGGTATTACCTAGTGAATAAACTAACCTTACAAtaggagttt---tctttttctaattaacATTCTGGGTTAAATAGGACATAGTTACATATAca--tgaatgaaagaaatgttaCATATAcatagaatgaaagaaatgtgaGAAACACATAGGCTTGTAGCTATAGCATTTTAGAACTGAAAGGAAATTTACATACTGTTACTGTTTTCTGGGAGAG----------------AACTTCAACGACCTATCCAAGATAGTACTTACCATCAGCAATGAACATTTTATTGGCTCTTGGAAAATTTAGGCCTCAGGTATAGAGTTGTAAGTAATCAGGTACTTAATAAATAATTAG---TTGTGAGCATTACGTACCTCTTTCCTGCAAATAGT--------GTTTGTATAAGAGGATAAAC--AGTAATAGAAAGCTATGTACTAAATAACAAGTGAAGAGTAAAGTTACATAGAATTATATACAAGTTTGGGG--GGGCATGAGTAAAATTTTTCCT------TAATGAG-------------AGTCATATGATTTGAagggaaataaa---------tagaatttggTAACTGTGGGAAAGAGACAAG-----AACACTGTATA-TGTTTTCAAATGGTTTATCCCAGTAG-----GGGTAC-------TGGGTTTGATTGAATTGTG--ATATATCTTTCCACAAGAATACTTTGATGG--AAACCTTTGGTAAATGTAAATTTAATACAACCTTGTCAGT-AATACTGAATTCAGAGTTTACATGAAGAATTTATATTCTCATGCTTAGTAAATAATAGAACTTGGTATAGTGTCTATTCTTTTGGctgtcagtgttt-ttttttttaactaaatcaTATTACTTGGGAGGCAGTGTG-AGTGGTTAAAAACAGAG--CAGATGCCAGTGAAATTAAAATGGGAAGTTAAAGACCACAGTATAGTGAGATTTAACCACAAGCTGTTTCAGTTCGGGCCAGGTTTTCCTTATGTTTACACATTAAGtttgtatttttgtctctgtcatgCTTATAA-----AGTAACAGTGGCCTGGGTTCCTTAACGCTGTCTTCTTCTGagattcaggttttttttttttttttggtaccaggaattgaactcacaactgtgcacttcaaggcaggcacttaggccactgagctaaatccctacccctgattcagttttttatattcaaggaaaaaaagaattctttgctgttttgggcttaaatatatattctcttttgactCCTGATTTTGAGGGTGAAATAGTTTCCCTCTTGTGAGTAGATAGGTTTCTTGGAGTAACAGGAAAAGCTGTCAGTATTTTTGGATCATTAGTCTCTTGGAGTAAGAGGAGTTAGAGTTTTGGACTGCCAGGCTTATTATTTACCCTGTCTGTAGTTAAGAATAATTTGCTTAGCCAGATTTTATTATCTCAAAAGAAGACTAAATATGGTAGTGTGACccaattgaatattttttctag-----taGCAGATT---------TTTAGAGGGTTAAGTATCTGTCTAAAAATCTT--TTGTATTTGGCTGTTAAATACGTAGTTAGGCCAGTTTTGTTTCTCTGTAGTAACATTCCTGAAGATTCAAAAGAGCATTTTCTGAATAAGCTAACATTTCTTATGTTCCTACTATAAGGGCCtggcattgtttttaatttcatctgccaAGACTAAATATTGCTGGGTTTTGTGACTAGGACCCTAGCAATAAACATCTTCTAGTGCTTAGCTTCTGCAGTCTTcatcccacctttttttttttatccgtaccagggattgaactcacgactgtgtgcttgcaaggcaggagcttatgccgctgagctaaatcctcagcccctctccttttttttttaatactgggaattgaactccaagaccttgtgcttgacaggcagacTCTGCACCGCTGAGCTGTGTACCTCTTGGCCTCATCCCATCTCTGCCTTGGCTCTTCTATCATAACTTCTCACCTGGCTGAGGAGTAAAGGGAAGAAAACTTTACTGTTTAGTAGTGAGAACTTACCCTGAATTATACTagatactt----------------------------tgttttttttttttggtactggggattg-----------------aactcacaagctcacac---atgccaggcagg---------------------tgcttgtgcctct---------------gagctaaa-------tccccgacccttaTACTAGATACTTTTTATGGCATCTCATTTTATACTCATACCAGTTCCATAATATAGGTACTGTTATGGTCACTTATCCGCTGTTCATTACTGTGATTGAAGTACTGGTTAAGGTGCTAAAGATACCATAGGTAAATAGTCAGATGAGGTTGCTGCTA-----------AGGCACAGAGATGTTCTCAAGGTTAGAAGCAAA--------TAAGCTGGGATTTAAATATAGCACTGATAGATTGCAAAAGGAATGTCTACAACCATTGTTAGTTAACTGTTCTATTATTTGCATCTAttgcatgttctttttttttttttttttgacagggtcttgctgtgtagttcaggctggccttgaactcattctgaagcccaggttggtctcactgcagggtgattctcctgcctcagcctccagagtgctgggattatagatgtgcaccatcatgcccagcctctAGAGTATTGTCtttgt--taaagatttttttttttttatgaatccAAGAAAGAAACCTGTCTTGAT-TTGTCAAACGCACCTGCCTGATTatgcttttcttccttctgctttctcTCCACTCCCTGTTTACCTAATCATAGCTttgacatttgtgtttgtgtcttGGGATGTGTTTGTGTCTTGAGAAtcaggaaagctttatttcttccCTTAGCTTCCTGAAAGTTCCTTGTTCACTTGCAAGTCCTTTCCTGTGTCACAAAGGTGAACAATCTGTTGTCAACTCTATAATATGGTTATACTAGttggaatattatttttcctttccccagtTCTCTGCTTTGTTGTGA--------CTGCTGACATTTGCCTTCTACAGTTTGTTTGGATAGAAAATGCTTTCTGTATTTGGAATTCTAGAAAAGAACTTTCAGATTGGGAAGAATATCAGAATCCAGG-GTTTCCTGTTTACCTGAAATCAG-TTTGTTAGctttttaagtttattatttAGTTTGT-TTATCAAAGAGAGTTGCTGTTGCGGAGTATGACTATTACCATCATGTACCATATCTATGATGATCATCATATCTGTGTTTATTCTGGAGTAA

a score=28842
s chr3            96122645 3304 + 160039680 TGAGATACTTTTCTATATTTCCATTTATGTCTTTTCTATTTTTACAGCCAGTAG-TTACTACTATCAACACTACTACCACTAAAAATAATAATGGCTACAACTCATTCTTAG--GTTTGATTTCTGGGGTTAGTTTTAAGGAAAGACACAGATGCCAATGAGATATT--------AACTTGTGTACTAATTGATGCTTTTGTAGTTTTTATGGGAGAGGAAAAGG----CAAAGATCT-TTCTTTTGAAAATTTGGTCTGATGTTATATTCTTGTAAAGGGTTGCCTACGCTACTTCTGTCTATTCCACGTCCACCAAGAGTTCAACAGTTTTCTTATTTACATCACATTTGTACACATGATATAGAGTTTCTAAAACAAGTTTAACAAGACTTGTCATTTTGGGGGAGTGAAGGAAATaggccgggtttcatgtagcctagctccccgtgggtagctgaagatggccttgaatttcctcatctttctgccttcacaattgctaggcatacaccacgacacttgaccttaGACATTTTTTAGTACATTCTTTTGGAAGCATCTATCTACATAATAAACAGTTTATATAGAGTTGGGGATAAGACAAACCACATTATTCTAATATGGATCCTGTAGAATAGATAGCAAA---TGTGTTGGTCAGGATCAGTGTCTGTCTGGCT-CTCAAGGTAGTAGTAAGATTGAGTAAACAATGTCTTTGATTAAAGTTTTCGATTAGGTATT----TCAAAAAAGGACTTT--------------------------------------------------------------------------------------------ATAGGTAACTTTCAATGATT-----------------------------------------------------------------------------------------------------------GGCATTCTTGGAGAGAAACA-------AACAACT---ATAATAATCTGTT---TAGATTTTGAAGATCTCTCTCCCCTTTATGGTTTCTTTTGCTTGGTTAAAATATGTTTTATTTTGTTTTTGTCTCTGATTTCCAATACTTGGTAAATATTTGTTCAATAAAGGAAGCTGATTGATAATCTGCCCCCCCCCTTTTTCTCAGGAAATAGCCCATT--ATAAACTTCTAGAAGGCAG-----CATTGCTTTATATATTTTATTCTCCTTCACCTTGCGGCCTGTCTGGCATTGAG----------------------------------TTAGGAGG-TTAAGTATCCATCAGTGGAGAATTTGC----GCTTGGGTGCCACTCTGAT-------GCCCTTCCTGAGAAAGAGGACAAGTGGTTTTTGTTTTGTTTTTTAAGAAGCAAACTAGCTTGAATAACTAACTGTAGGGAGATCTGCTGCTTTGATGCTTCAGGCATCCACTAGGGCCAAACAGAAGAAATGTGTTAAAAGTTGGTGTTTTGTTTCTCTCTTGGTTTTAGATTATGTTTTGTCCTGTTCAAAACTCA------GCAGTGATTTTTTAAATTAGTATAAGACAAGTGTATTCAATTAAAATAGGTTTATTCTCAAAAAGTATATTCTAGCTTCAAACTATCAATATAAAAATAAAAA------TATCTCTATGATACATAATTTTATCCTGTCCTCTTGCTTT--------AGGCCTTAGGG-ATATGATGTTATAGAGTTCTTCCAAGTAGAGTTTCTATCTTAGTGTTGGTTGGCACACAAAAGTGCTTTG-TTTTGCTGTGCCTCTCTGATAGTCTTTACAGATGATTTCTTTTTCTGAATATGGGTTGCATAAGGGATT-GACTTTTAAAGTACACATCTTTTTCTTTGGTACGTATCTGTAGAAGCCAGAGATCTAGCTGAATATGAGGGCGGGGGGGGGGGGCGGCTAGGAGT------------------------TTGAAAGCTGGC--GATATGTGACATCAGGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTTACTAGCGT----------------CACTAGATTTATGTTTTGAGAACTGGTTTTATCACTAGCTAGCTCTGTGGTTTGGGC--AGTGACTAAACTTTACTAACTTGACTCTCTCTAAGTTGTTGTCATCTGTAACTTGAT-ATATGGAATAAAATGGTCTCTGATAAGATATTTCTAAAAGTTCATGATTCTAAAGTGTGACACTGG-AAGGCAC-TGACTTTCTGAGCCTCCCTACTTTGGTT---CACATAGGATGTTAACTATGTACATAttttattttatgtatatagttgcttcatctacatgtatggctgtatatcttactgttgccagcagagattaaaagaATTACAGGTTCAatggggctgctgggaatcaaatccaggttctctgaaagagcaaccagtgctct-taaccacaagccatccctccaaccccAGGTTGTTTGTTCTTAAAAGAAAAACAAAATA-CTACAAGAAGAGCAACCTGCACAAGTGAAAGAGACCCAGGTAGTGCTGGAGATGACCTGGATTAGAGAGTATACTTT---ACTGCAGCCTGGATATGT--GTGCACTTGTGGAGTGGGTAGCAGTTGTCAGTAAGAATAGTAAC-AGCTAAGAAACAGTGTCAGTAGGCATG-------------------------------------------TGGAGTTT--GTGTCTAAACAGATATGATTTTCTCATAAATCTTTTGGAGAGCAGGTATGAACCCTGAA--TCAGAATCAGAACCCCTAGGTCCAGCTGCCTTGCCATTTGGGTATCATTTAGG-TATGGCAAGTGCCTCTGAGTATATGTGTCACCTATCAGAAAACACAGAATAAAAACCTTAAA--AAGTATTTAACTAAAAATAtttgagggacagagtcatatatataacttaggttggcctagaactcactaggtagctgagcctggtcttgaacttgggagttttcccacatcactcttttggatattgagattac---------aggtgtgtactattaTAATTTGAAACTTGtttttttgt-tttttttttgtttttttttttGATTTGTCAAAGTGTTTCACAAGTAAAACTACAAAGTTATTTAGAGGACTCATAGCTATACTCATATAAATCATATTTGTTCATATGTACCCTTATGGTATCAATGGGGAAGATCAGAAAATGGGT-----TAATATTTGAAACCAA--------TAAATAATTTA--AAGTCTGTTTTAAGTATGGATA---CTTAAAACATT---AAGTA-AGAATGCCAATATCAAGGATCTCCA-------CTGAAATGTAGTCTTGTCCTCTAT---------GCTCCTGC-TCTCCGTAAAGACTC------------GAGGTCTCTCACTCC-TCTGGGTAAAGTAGTTGCTCTTGTATAGATTCCTGTG-CTAGT-GACACTAATGGGTTCACACTC-------------AGTGC-----AGGGAGTTCTGTAGCTCCTCTTC----TTTGTATTCCCAGCCATTAAATCAGTGTCTACAAGATGATAGACTAGATTGGCAAATTTTGAATAAATTACTAATAATCAAGTTG-----GAGGTAGGGTGGAAGTGTCTAAAAGACCAGCTAATA-------------------ACA----ATGGCAAGTGG----TTTACA-----------TAGAGCCTGAAGGAGGCTTAGAGATGGTAAGAAAAGATAGATGCAGAACTAAAAAGA----AGAAAATGATGAAAA--------------TCTTTGAGCTGCAGTATCTAATTT
s HiC_scaffold_1 141383405 3511 - 233722169 TGagataatatattat-------tttaagtattttttaaattgcaaaccTATAGATTGTTGCTATCACTAACGCCATTACTGAAAATAATGA--GACAGGACTTCTTGTTGATAGGTTATTTTCTTGGATTAATTTCAAGGAGAAA----GAGGGCAATGAGATACTTACCAGATAACTTATTTGGTAATTGATACTTTCACACTTTttgtggaagagaaaaagagaaacagacaccTGCTATTCTGAAAACTTGGCATGATACTATAAGGTTGTGAAGGGTTAC------TACTTCAGCTCAGTC----------------TGAACAGTGC------------------------------------------AAGAAAGTTGAACAGGATTTGTCAT----------------------------------------------------------------------------------------------------------------------ATGTTTGACCTTAGA-GGCTTACAGAACATTCTATTGGAAGCATCTGTTTACATAGGAAACAACTCATCCCAAATATTGGGTGAGCTCAACCATATTCCTGTAATATGAATCTTATATAGTagataataaaaatagtatttttctgGATAAGTGCTTGCTTGCCTCCCCCACAAAATAGTAAGATTG----AACAATGACTTTAACTGAAATATTTGGTTAGGTGTTATCATCAGAAGACagcttttgggctggggatttagctcagcaggcataagcacctgccttccaagcgtatggtcgtaagttcgatccctggtacaaaacaaaacaaaaagaaaagacagcttTTGAtgattgccccccccccccccccgcttttttttggtaccaggaattgaactcatgacctcacgcttaccaggtaggcacttaagccactgagctaagtccccaacccCTGATAGGCATTCTTGATGAGGAACATGGTTTTTATAATTCAAAGAGTAGATTGTTCACTGAATTTTGAAAAGACCTTTCACCTTTCTcaattttctt----------------cttcatctt-ttcctGTGTCTGGTTCCTGATACTCTGTAAACCTTTAT--AATTA--GAAATTATATGGTA-----CACTTCTTGGTTTTCTTTGGAACTAGTCCATTTGATGAACTTCTAGAAGATGGTCATTTGTTGACTGATACA------TCCCTTTCACA-TACAGCCTGCCTGGCATCGAGTGGGTCATCAGTGAGTGCTTGTTAAGGTGATTGATTAGGAGATTTAAATTTTCATCTGGGGA----TTGCAGTGACCTAGGGGCTACTGTGCTGTTGGTGGCCCTTCCTGA-AAGGGGAATGAATG---------TAGCTTTTTCACAAGTAAACTTCAATAAATA--TGAATGTGGGCAAAGTTATTGCTTTGATGCTTTCAAACTTTAC-ACTTTTCggcaagaaaaaaacattaaaacttgGTACATTATT--TCTCTTGGTT-----TTATGTTTTGTCCTGTTCAAAATTTAGCTATGGCTGTGAGTTTTTCAA-TAGTGTATGAGAAATGTGTTGA----------------------------------AGATTCAGACtatcaatagaaaagaaaaagacacgtTACCTTTGTAATACATAGTTTTGTTCTTCCTGCTTGCTGTCAAGCTTAAGACCTTAAGGCATATAGTGTTATTGAATACTTCCAAATCCAGTTTGTATTT-----GTAGCAGCCac---aatttgatttgattttggcATGCCTTCATGATTGTCTTTATAGATGATTTCCTTTCCTGAACATAGTTTGCTTAAATGATCAGATTTCCTGGATACATGTCATTTTATTTGTTATACATCTGCAGAAG-TAAAAATTTAGCTAGGT-----GGCAGGGGAAAAAAGTTTTTGTGAATAGACAAAGTAGATTACATGGAAAGTTGAGAGCTAGTCATATATGTGAAGTCAAGTAAAGATTACTGGAATGGAccaacaaatttatttatttatttattattttttgtctttttgagacagggtttccctatgcagttcaggctgaccttgaactcactttgtagcccagtctggcttcAGTCttacagtgatccttttgcctcaacctccgAGTGATGCGATTAccggcatgtaccaccatgcccagcaacagaTTTAT-TTTCTATACCTAGTTTTACCCCTAGTTAGCGCTGTGACTTTGACCAAGTCACTTAATGTCAC--------CTGGGTCTGTGTTCTTCTCA--TGTAACTTGAGAATATGGAATGAAATGATGACTGATATTGTAGTTCTAAAAGTCT---------AAGTGTTATACAGGAAAAACACTTAACTTTCCATACCTCCCCACATAAGATCCACATGTGAAATgttaattatgtaaata-------------ataaaaatgtatcatgTACGT---TCCCTG-GTAGACTAGAATTGTCAGTTTGTATTATAATGCTCATAA------------TGCTCATaattaattt------------------------tgctttataaatatgAGAC-----------------TTGGCATCTTCTAGAAGAAAGAGTAGTTAGCTGTTTAAGGTATAACCTATACAAATGAAAGAGA--TGAATAATGCTTAGGATACCCTGGGTTGAAGTTTGTGCTTTTTAACTCTAACTTGGAAATGTAGGTATGTTTGTGGGGTCAGTGG----GGTTGGGAAGAAACGTAATAAGCTGGGAGACAGTGTAAATGAGCATGGATAGTATTTTTAGAGGTACAGTGGTAAAAAGTCATTAGCCTATGGAGTTTTCATGTCTATATTGATCTGATTTTGCTATAAAT-TCAAGGAGAACTGATA-AAACTCTGGATTTTATCGTCAGAATAC-------------CCTTGCTTTCTGGGTATCATTTGGGCTGTATCAACt-tctatgtatgtatatttctctttttaa-----tcaaaagaaaaatcccaaagcacttatgtaattaaaaatttt--------------------------------------------acta------tgagactatttgtaaa--------------------aattctttaaaca--aaaattacaacaaaagaaGGTATTTA-----GTGAACAgaaaactgtataaaaatattcacTCATATTTGTAGTGTAAATCTG--AGAGCAATAAATGATTCAAATCAGTAAGTGATTTATAAGCCT----GTTTTA--CATATAAATAGCTCTCACT--TATCTACCTACATGG-ACTAACATGAACAAGTAGGAAACAACTACAAGTATTTTTGGGCATCCACTATATGCTAAGCAATATGGTATGTATGTTCAAGGTTTACATATGCCTTAcgattttttaaagtgtaaggTGCCAACATCAtggatcttaatttttttcttgaatatacTCTTGTCCTCCAGCCTGGCAGAGCTCCTGCATATCGTTAAAGACTCAGCTGAAAGTGTGAGTTTTCCTGATCCATTTAGGTAAACTAATTTCCCTT-CATACTTCTTTTTGCCTAGTGGAcactaataattttatatttttcctactgTTAGAGTTCCTTAAAGGTTGGACTGTGgattatctttttcatttgtatactCATGCCCAAGGGTAGTACCT----GGT----GAccattttgtaagattttaaataaatgactgtTGGTCAGATTGTTGGAGAATTACGATATGTGAATTTAGAAGGGCAACTAATATTGCAAACCAGTATTTAATACAGCATATCTCAGGTGGATGTTTTACATACTGGGTCAGTAGGGATTCAAAGAGGTTTATGTATGACCA-AAACTATATGGATAGAActtaagagaatttaaaaaatgataatagtaataaaatatttttctttgaagtg-aatatataattt

a score=15288
s chr3            96128001 1189 + 160039680 cattatcatgagtcatatgagattaatgatacaaacctcttagagttgtttgaaaatttaagtgaaataatttctaaagctttagTCTTTGACTTTGTTTCCATTAAATGTTACATG--GGTCCCTTGAGAGTAGAAGTTGGCCATAT--TCTGTTTCTTTCTGA-AAGGTTACATTTTTGTATGTTGGAAGGACCTGTATTAACCCAAGACAGCCTGCCAAAACAACCATTCATCTCTCCTCCCA--------------CCTTAGGAGGATTG-TGTGCCCCTG-----CCCTCCTCTCTGTGTCTGGATTCCTTGGAGTTGACATCATAAGCATGGAGGAGTCTCTGACCTTTGAAAGTTCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACTCTTAAATGTTTT-TTTTTCCAGTGAGGTTTGAGAGGAGTTGGAGAGGATGCAGAGGCTGCTCTAGTGCAGTGGTGGGGCCAGAG----------AGAG-------TGCAGGGTGAGGACATGGAGGCTTGGGAGGATGGTGTAAGAGAGTGTAG--GGTCAGGAGTTTCTCAAGCATTT-----------------------------------------------------------------------------------TAGC---------------------AGAGAT-CTATTACCT------------------------------------------------------------------TCCATCAGTATTTATTTTCAGGTT-CTATCCTCAGTTACTAAG---TTGTTGGGGACTTAGTATGTACAGATGGACTTTAATGCAGTATTAGTCTGAGTTAAAACAGTCATTAGGGAAGAGAAGCTAT----------ACCAAATAA-AGTCTTTAGCAAAATGTCTTTGAGATAAGCCAA---TGTAAATTTGCCTATGTGTAATACAGGGgtgtgtgtgtgtgtgtgtttgtgtgtgttgtgtttgtCTGACTGTCTGTCTGTCTATAGTTGGGTACTATACAAATATACAAACATATTTCAGTTTATTGAAATGAAAATT--GTGTACCTGGTA-GTGAATG----GGGCACAGG-----------AGAGTTTTTGCCCTCATATTGCTGCT-GTTTGGTGGAGACACAAACA---AAATAAACAAAATCTGTGTGC-TATGGGGAAATGGTGATAG-ATGTGGAGGGCAAAGTTTTATTGTGAATACCAAGGGAAAAGT---------------GGAGTCCAGAGAACACTTTGCAAATGAGATGGCACTCAGGTGAGTCTTTAAGAAGAGGAAAGAGCCTAACAGTCCTT--TAGGCAGGGAACAATCTATAC--AGCGACTGAGATC-------TGAAGTATACTT------------------GATGGAGCTAATGGGAAGGAGAGCCCAGTCACGAAGGGCTTC-TGTGTGATATTCAG-AATTTAGATGTTAAACTTTGCTCAGTG
s HiC_scaffold_1 141388800 1655 - 233722169 CATTTTGATGTATGATAGGGAGTTGATGTGACAGACCTCTTAGAATTATTAgactctttaagtgaaataaccCCTGAAACTTTAACATGGTActtattttcacttcttttcttcctgtagGACCCACCTTATTATTTCTGGGTTGTAACATCTCTTTCTTTCAAAGaaggttatattttgttttgttgga----tctCTATTAACCAAAAGCAATCTGCCAAT-CATTCATTCATCTCTCCTTCCCATATAATCCAGAATTTTTTGTGAAATTGCTAAGCCTCTGTGTTTCCTTTCTCACCTTGTTTGGATTCCTTGGGGCTGA--TGAGTAATGTGGAGGAGTCTCTGgcctttgaaaattcttttttttttcttttgaaacagggtttcattatgcagttcaggctggccttgaactcactgtgatcctcctgtctcagcctccagaatgctgggattacaggcatatgccgccacacctggctctgtGTGAGTTTGAAGGGGATACTGCGGATTAAATTTAGGGCTTTGTACAtgttaggcaaatgctctgccagtgagctacatccccagcccaaaaattCTTCAGAGTCTTGAATGTTGTAGTTTTTCAGTGGGTTTTGAGCAGTTTTGGAGAGGACTCAGAGGAAGCTCTAATGTATTAGTGGATCCAGAACCATGGGTATAGAGTGAGCTTTGTAGAGTGAACATGTAGAAGGTTTGGGGGATGTCATAGATGAATATAGTCAGTACATAGCTTCTCAGGTGTTtggtttaaaactttttttttttttttttttttttttgagataggcccTCAGTATGtattccagactgaccttgaacttgcttagtagcccaggctggcctataATTCatggagatccttctgcctcagcctcctgagtcataggattattggcatgtgccaccactcctagcTCTCAGGCATTTCTATATCTTCACCAGTAGTTAAATGTAGATTACTTTTCTCTGTTACTATGTACTTAATGGGCACTTAGTGTACACAGATTGATTTTAATACTGCATTAATCTGAGCT-GAATAATTTTGGGGAAAAGAAAGCTGTTGCATGTAAAATCATATAACAGTCTTAAGC-AAATGTCTTTGAGTTGAGCCAGACTTTTAGACTTGCCTGTGTACAAGACTGagttgtatgtgtatg-------------------------------------tgtttgtagtTGGGTACTGTATACATATAC--------TTCAGTTTATCTGAATAAAAATTTAGTATGCTAGGTACTTGAATGCTAAGGATACAGAATAAACCGGGCAAAATTTTTGTCCTCAGCTTGCTCCTGGTTTAGCGAGGAGACAAAcgtgtaaataaatataaatagcatATATATGATAAAAGTTTGATAGAATGTGGCATACAGA--TGTAGTGGGGACAGCAGGGAGAAAGTAGGTAGTTTACCTTGGGAAGCCTGAAAGGGTTTTGCAAATGAGGTAGCACTCAAGTTAGACAGTTAGC-----TACTAGGTCAGGAGTCATTCCTGGCAAGGGAACGGTATGTTCCGAAGGACCAAAGTTGGAAGCATAAAGTATACTTGGGGAACCATAGGTACAAGAAGGGAATAATGGGAAATAGA-TCAGGAAGTGGAGAGCTTTGTTTGTGGTATATAGAAATTTAGATTTTAAGCTTCATTtactg

a score=21226
s chr3            96131651 2613 + 160039680 CGTATCATTCTGGTATGTTAATAATTCATTTCTGATTCTTTTCCACCTGTG-CTCACAATTCG------------AAAACCTCAAATTTTCC--CAGGGTCTGCTAGGTCCTGTCTGTGTTTTC------TACAGCTCTCACCTCT-----------CACAA----ACT---------GCTTTGTCGGCTTGGAGC--------------TATCTTAATTCCAGGCTATCTCTCTAGTTG---CTCACTGTCCAGTTCTTAG-TTAAGTACCACGTCCCTGTGGCGGCTTCTCCTG---CCTTACGGGAGATAACATCCTCGTCTTCAGTATTTATTATTGT-------GAGAGTTTATAATTTTTTCCTTTTTACTGTAGATATTTTATAAGCACGGAG-ATTGTGTCTGGTTCACTGTT-CATGTTTAATCTTGAGCATAGTGCCCAATGTTCCGTTGGCAGTTGATG------GACTTTTTATTGTCCCAAGCATGATGTGGTTAAGGGAGTAGATGCTGTAGAGACTAAGAGAGTAGCTGTAGAATGGAGAAGAGCTGGAAACTTggtgtggtggttgcacatgtaatcctagtacccaggaggcaagggtaagaagatcactacaagtgggaggccagcctgggtttcataggaagctctaggccattgaaggctgtgtagcggcgct---------gtcttttaaaaaagaaaagaaaagagaaaagaaaagaaaaaTGTAGAGTAAAAT---GCTAGCATTTCAGTCTACCAGT----------GAAAATGGT----------TTTGAATGATCTCAAT--AGAGATGAAAGGTTTT--AGATATTATGAAACTCTAAGGTAGATGGATTAC-----------AGATGAGCATTAACAT--TTCTCAGGA-------AAATGGCAGGACTTGAAGT----------GAGGAAACACTGAGCCTGCGACTGTGTTCCCTAACACTGAGTGCGGCTGTGCTCCCTTTCTGTGTCATGCCTTCATCCCTTTGGAAACGGTGGAGGCCAGCAGGAAGAT-ATGCATTCAGACTTTCTACATTCAGAC---AAGCTATTCACCTGGCTTTT-----------TGTTTTCATTGTTGAGCAAATATGATAGTATGTGGCAGTTGGCAGGAGGCGTTGCTAGCCTTGTGTGCTGCTGAGTGCACAGCTGTTGAGT-TGTCATTGAAAGAGCTTAAGGAATACTAGC---------TTGTTCTTGGTT-CTGTC-----TTCAGGAGAGCCTGAAAGTGGAAGCAGGGTA-AGAGGCAGA-----ATTGAATTTTGAGCAAGATACTCTGTTTATGCAGTTCTGGAGTTTATAGCTA-TGATCAGCACCAACATTTATAAATGAATATAGGTACAAGTAAAGACA-GATCCAGGCAAAGAGTTTATAAA--AGCACC-----TGGCTCACGATAATGATGTTTGGCTGCAACAAGTAATTTTGTA-----------AAGAAATGATTTAATTTCCATTGAAAAGTCCA---TCATTCTCAGGAGTCAATTTTGTTGTTCAG-------TAGAACTGAATAAGAAC-CAGTATGTGAACATTATTAGGGGGAGGAGTGTAGTGATAGGTTTGGC-----TTTTATTTAGAAAAAACAACTTATTACAGTTGG----Atctgaaagtaatgagctccctgtc-------------agagcttgtattcacttgggaactgga---------------caatctgctagagatg-tactagaagagt-----------------------tctttggtggggtcagacatgggactgagtaattggtgacagcccttctaCTAGGAAAACTGGATGCTTTTGACT-------GAATCCATCTATAAACCACACAGTCAACAAATATTTGAGT-GCTGCTTCCCTTTTATTTGAAAAGCTGAAGGTTGTGTTTGTTTTTTTGTTTGGGGTTTT---------CCTTCCTGTGTGTTGAGACAGGGCTAGCTGAGTCTTCGTAATTGGCTTCGGTATCCTCACTTGGAATTTGAGAAGCATCAGCCAGGT----GTTGTGATGTTGTAACAAGATCTGCTGTCCTTCT---------------------------GTTGGGCGAAGGTCACAGTCCAACCATGTATTGGAGA-ATCCAATACAAGAATGAGCTGCCAAGAAGTTTGCTTTAGTGCTTCACATTTTTTGCTGAAGAGCCAGTCTTTC----------------CTGATAGGAGTTATTTGTTTATTTTAGATGTTTGGAATTGAGCGGCCTACCTTCTGT-TTCCATGTAAGATCCCGGATGCCATGACACTGATGGTTTTTGTTTGCTTCTCCCTCAGGAGCCTCTCTCGATCTGGCTG-GAAATTGTTTGCATGCCTGTGGCTCAGTC--TCCTTCGTTCCACGGAGCGCTGTGTGTGCTG------TTTCGT--------------CTTTCCCACGTCCTTTCAGAAAGCTGTTAGAGTAGCTTACAGTGGCTTGActgtctgtctgtc-tgtttgtttgtttgaggcagggtgtcatagttctatctgccctcgaactcattacatagaccaagctggcctcgaactcacagggaattacctgcctgcctctgctttcagaattctagtattaaagacctgagccaccacacAAGTTTACCTTATTTTATTTTTTAAGAGTAAAGATTTAAGTTCATTTTGGAGTTAGTCTCTTAATTTTGGACTATTTATGTTTGTTACTTGGATAGTGCCCATGTCCTGTGAC--AAAGTGGTGAAT-ACAGTGGGCTTT----GGAGAGAATTCTCATTTGCATTAGAT----GAAAAGCCTTTCATTCACCTGTGAATTCTGAAAGCATTTAATTttttttttttttggacagggtctttctttgtagctttgaattct
s HiC_scaffold_1 141392450 2621 - 233722169 CGTAGTAATCTAATCTTTTA-CAATTCAAATCTAATTATTTCTTGCCCCTGGTTTACAACCCTTCACTTTAGAACGAAGTTTCAAACTACTCAACAGGGTCCAGCAGGccctgtcttcattttcatttgccACCGTTCTCATCTCTGTATTTCTTCCTACAACTGAACTTTGATGTAGGTTTAATCTGCTTGTAGTATGCTTTCTACATATTTCCAAGTCTCAGCTTGACTCTCCAATTGTTTCTCATTCGTTGGTTCTTAGATGAAGCATTATTTTCTTGGGGAAGTTTTTCCAGAATTCTTGCAAGAGTTAACATCCTCCTGCCTAGTGtttattataattgttttggaaattttgtgACCCTTCCC-----ACACAAGAAGGTCTGTAAACAGGGGGGAATTAGTCTAGTTCACTATTATGTGTGTAATCTTGAGCAT---GCCTAAAATTCAGTAGGCAGTTGGCACTTCATAACTTTTTGTTAAATTAA---TAAGGTGGTTAAGAGATTGGAT-----------TGACtgagtaatt---------------------------------tatttatttatttattttt--------tgagacagg-------atcttgctat-----gtagtccaggctggccttaaattcactttgtagcccagtgaa--ctcaacagtgatcctcctgcctcagtctcccta--------------gtgctaggTTTAGAGATGTGTGCCATTATGCCTAGCTGGAATTTAAGATTTACACTTACTGTTTTAGAAAATGGCAGTGTTCACGTCTGGGTTGCTGCAGTGTAGAGACTGAGGTCTTTGCAGAGGTCATAAAAtt---aagcagacacattgcttggGTTTTGTAGATGGACATTGGTAggattttaaggagaaaaataaaaggcaggtgTTTAAGTCTTTAGTCAGTTAAATAGATTCAGGCCATTCCTG----CAGTACAAATCAGTGCAATT-----CCTTGAATCAGTAATGCTCTAGCCTTCTGGGAAGCTGTGTATTATAGAAGAAAGATCATGAGTTCAGACT--CTGGATTCAGACTTTGGGCCACTTACCTGAGTTTtcattcagtttttgtttttctctttg--taaat-----------tgGAA--TGGTAAGACCAGCTACCAGAGTTTCAT--TGTTGAGTAA---------GAGTATttttttgaaagtgtttaactaatattattaacttggttttattcttgatTGCTGTCATCACTTCAAGAGAGCATAGAATTGGAAGTAGGGAAGAGAAGCAAACAACAAGTAAATTTTGAATAAGGTATTTTATTTA-GCA--TGTTGAGTTTATATTAAAGGGTTAGAACAAACGCTGATGAATGAATACAGATATAAGCAAATACGCAATGTAGGGAAAGATTTTGTAAACTAAGACCCTGCTTGACTCGTGATAACATTGTGTTGTT--aatagagaactttttttttttctttttcagacaaggtttcatttc-actgtgtggttcaggctggtttt--gaacttacttttgtagtccaggctggccttgaactcacagtgatcatactgccttagcctccctagtgctgggattacaggcatgtgcctggcAGAACTACTATTTATATaaagaaattctttgtttttgtttttatttgtttgttttt-gttttttgttttggttttgctataaagttcagactggcctcaaacttgcagtaatcctcctgcttcagtctccaagTGATGGTATTACAAGTGTGTGCACCAAGCTCAATTGAATATTCTTGCATGAAGGAAAGCAGTAGATTAAATAATTGCTAA--GCCCCGTT-----------TGGAAGATTTTGATTTCATTTGAGATTCGTCTATATGTCATTCAGTCAACACATATGTGATTTGCTTCCTCAGTTTTATTTGAAAGGCTGAAagcca-gtgttttgttttgttggggtttttttttcttttccttcctgtatACTAAGATAGATCCAG---AATATTAGTCGCTGGTTTTAATATCCCC--TTGGA---TGAGAGACTTAAGCCTAGCACTGGTAGTGATATCT--ACAAATGCTGCTGTCTTCCTCCCCTGGTGGTTGGGGCTGGCTGGAGGGCTAGGCGGGAGT-ACATGGCATTCA---ACTGGAGACGTGAAATACAAAAATGTGCTGCCAAAAAGTTTGGTTTAGTGCTTCAGA-TTTTTACTGAAGAGCGTATCTTTCTATATGATTCAGCCCTcttacagtattt-tctttttaatgttgttttttaaaat-----gacct-tCTACTGTCTTGCATGTGAGATCTGTGATATCATAGCA-TCCTAGTTTTCATTTGCTTCTCAC-----AGC----CTGGATCTGGCTGTAAAATTGTTTACATGCCTGTGGTTTAGTCAAGTCTCTTTTCTGCTGAGCACCTTTTTTGctgattgttttttgtttgcttatcaCATATTTTCTCACATTCTTTCAGAAATTTGTTAA----------AGTGACTTTATTGTTACTTTGCCTTTTTTGTATGTTAGAAGC-----------------------------------------------------------------------------------------TTGGAATT----------------------------------------TTGTATCTGTGA----------------------------------TCTTGGTTGTGggttattcatgtat-ttatttcagcTGCTGCCATCTTCTGTGATCAAAGACTATGAATAAAAATGGGCTTTTGGAGTAGAAATTTCTGGCCTGCATTAGGGATGAGAAAACCTATTCATTCACCTATGAATTCTGGAGGAATTtaattcttcttaatttt--------tttttctttctttttttcattttt

a score=19026
s chr3            96140032 630 + 160039680 AAAGGGTTTGAGTTTAGAGACAAAGTTTCTACCATTGTGTGCCTTACATAGGAAATAGAAAATAAAGAA--AATTGGTATTTCAGATTGAGGAAAATTAAAGTGGAAGGAGAAGAAAGTTAAAATAAAAATTGTACTGTACATGAATATGATGTTACT-AGGTTTATTCTTGACATGAGGTAttttgaaactgagtctcaggtagctcagactagcttcaaacttccaatcctcctgcctcagctcctgaattttagcattataagcttgtgctgccatacctggct--TGCTTA---ATTGTGCTAGGCTGTTTAGA-TGGTCTTTCTGTGTCTCCCCT-AGTTTCTTAATACTCTGGGTCTATTATATGTTTCTTGTTTTTTCTCCTGTTAGGAAAGAACTGGGATGTGAGTGCTGCCCTCAGTGATTTTGAACAGTTGCGTCAAGTCCATGCTGGGAACCTATCCCCACCCTTTAGTGGAGGGAGTACTTGCCCTAAGACCCCTGAAAAAGGGGGTTCGGATAGAGAGCCCACTCGCCCTTCTCGACCCATCCTTCAGAGACAAGATGACGTCATTCAAGGTATTGCTCTGAGGACTAAGGCGGAGTAGGAAGCGCCTGTGTGCTCCTTTAGAGAGA
s HiC_scaffold_1 141408853 577 - 233722169 AAAgtccttattttgagacacaaaATTTCTACCCTCCTGGACATCAC-TAGAAAATAGACAATAAATAACAAATTGATATTTCAGATAGA----------AGTGTTAGGA--AGAAAACTTAAAGAAGGattgaaatatatattaatatttcccTACtgatgtcttttgtttgttttatgttgttgggaatcaaat-tcagg------------gcttTGTATGTGCTAG---------GCAGGGGCTGTATTACTGGGCTATA--------------TACATAGCTCCTGCTTACTAGTTTTGCTAGTATGCTTAGAGTGGTGTTT--GTTTCTTGCCTCAATTTCCTTATAC-CTGAATGGATAATTTACTTTTTGCTTTGTCTCCTGACAGGAAAAAATTGGGATGTGAGTGCTGCCCTCAATGATTTTGAACAGATACGTCAAGTCCATGCTGGGCACCTGCCACCACCCTTTAGTGAAGGAAGTAGTAGCTCCAAGACCCCTGAAAAGGGGTGTTCTGATAGAGAGTGTGCTCGTCCTTCCCGACCTACCCTCCAGCGGCAAGATGACGTCATCCAAGGTAC-------AGGGCTA----GCAGTTAGGGCTGTCTGTGTGTCCTGTGTAGGAGA

a score=27291
s chr3            96141342 412 + 160039680 AATAAAAAATACAAAGTTGAG-------AAGTAGCTGGCTAGATACAATTTTCCCTTGACTGGAAACT-GTCAAGCAGTAAGTACC-CTGCATCTGTGGCGAATTCTCTGAGAGAGTTGCATATGTTCTAAGGTGACTCCGTTTCTCATTGCAGAAAAACGCCTGTCTAGGGGCATCTCCCACGCCAGCTCCAGCATTGTTTCCCTGGCCCGCTCCCATGTCTCCTCCAATGGTGGGGGTGGGGGGAGCAGTGAGCACCCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAAAGAAGACTTCCGCAGCTTCATAGAGCGAGACCTCATTGAGCAGTCCATGCTGGTTGCCTTGGAACAGGCAGGTCAGTGGGTGTTTCCTCTTCAGTGATACCTCCTCTATT
s HiC_scaffold_1 141411971 419 - 233722169 aagaaaaaagaaaaactggcgTGAACTTGAGTAACTTATTTGGTGCAGTTTTTCTCTGGTGGGAAACTTGTCAGGACATGGCCCTCACCATATCTGTGGAGAGTTCTCTGTGTGGGCTGTGTATGTTCTAAG-TGACTCCATTTCTCATTGCAGAAAAACGCCTGTCTAGGGGCATCTCCCACGCCAGCTCCAGCATTGTCTCCCTGGCCCGGTCCCAGGTCTCTTccagtggtgggggtggggggagcagtGAGCACCCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTCACTGTGTACAGTGAAGACTTCCGCAGCTTCATAGAGAGAGACCTCATTGAGCAGTCCATGCTGGTTGCCTTGGAACAGGCAGGTCAGTGAGTGTTTCTTCCT-AGCGTTCCGTTCTCTACT

a score=24311
s chr3            96144166  933 + 160039680 aaagaaCTAGTAGTTTTATACTGG-CAGTCTTTCTAATCTGCT-----TCTCTCCCTTTCTCCTGCTGCCATGTCTGCAGGGCGTCTGAATTGGTGGGTTAGTATGGACTCCACCTGCCAGAGGCTGCTCCCTTTAGCAACTACTGGGGATGGGAACTGCCTCCTGCATGCAGCATCTCTTGGTGAGTCTC-AGAATGGCC---TCCCTCCCTGTAGAGAGAAAGCAGTTGAGGCAAGTGTCATGTGTGGGATTTCATCTTACC-----------CT-------------------TCATCCCAGGTAGAGCATGATGGTTCATGCCAAGACTT------------------------------------------------------AGGGGAATGGGAGAATCTTGCCTTAGCTTCCTATC-TTTAGAGATGGGAGAACACTGGATTACTGTAGGCTCTG-------AGCTGAGCTCTCGAAGTAATAAGCAT-AGTAAGCAAGCT-TATGTGGCTATGTGTATA-------GTG-GCAAAATTATACTTAA--CTAGT-------CTTTTAGTGTATA-AAAATACATGTTTTTCGTTGGCCTTTATGACACATTAAATTATTACGCCTACTCATAACTCCGTGTATT---TGTTCTTAGCTTTGGAAGGGATTCCCATTTTCTAGC--------CATTTCATGATGTTCATAGGTGTATGGTGTCATACCAGTTTTACTAGCTGTT-----GTATTTTGGTTTGTTAAGTTTGCTG-AGGAGTGACGGCTTCCTCTTAGAAGTTGAGGGAAT----------------------------------------------------------------------------------------------AAATTTT---------------ACCCTGCTCCTTTTTT-------------------------------------------------------------------------------------GAGACCCTGGGTTTGGTCCTTAGTGCCACAAAACAAAAG-----------CTGGGTTAGTAAGTGGAAGTGAGTGGAGACAAAGTGTCCTATGCCTTGCTTTCTCCCCACAGGGATGTGGGGTTTCCATGATAGAGACTTGGTGCTGAGGAAAGCGCTGTATGCACTGATGGAGAAGGGGGTGGAGAAGGAAGCACTGAGAAGGCGCTGGAGGTGGCAGCAAACACAGCAGAATAAAGAGGTGG
s HiC_scaffold_1 141413222 1263 - 233722169 AGAGAGCCAG-AGTTTTATTCTGGGTAGTCTTTGGAAGAGGCTAATCGtgtcttctttttctctact-CTGTTTCTTCAGGGCGTTTGAATTGGTGGGTTAGTGTGGACCCCACCTGTCAGAGACTTCTTCCTTTGGCAACTACTGGAGATGGGAACTGTCTCCTGCATGCAGCTTCTCTTGGTAAGTCTTGAAAATGACCCTGTGTTCTCCTGtaggaaggaagaaattgaatcGAATCTCACGTGTAGGACTTGATCCAGCCAACCTGGTTCTCTGCAGAAGTGATGGTATGAACCATCCTAGGTGGAA-GTGGTGGTTCACAGCAAGATTGCATGGCAGTGTtcacgtgcgtgtgtgtgtgcatgtgtgtgtttgttgcCACAGGAGAGGTGGGAGAGAGCCCTGCC----CTTTCAGTCAGGTAGTGAGGAGGGCACA-GGGTTTAGTTTAGGCCCTGCTCTGTGAGCTGA-CCATAGGAGTAAAGAGCCCCAGTAAGCAGATGATAtatagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgatTCTAGTGGTGATCCTTTTAGGGTGTGTAAAAAAGGAATTTCTAGCAGTGTTTTGTGACACAT-AAATTACTAAACCTATGTGCAACTCAGTATATTATTTGCCCTTAGCTTTAAAAAAGATCCCTGTTTTCCATCATATCCCTCAAGTGCTAATGCTGAT---TGTTCTTTATCAGACCAGTCTGACCTGCTGCTACTGTGTATTTTAATTTGTTAGACTTGCTGCAGTAGTGAAGGATTCCTGTCAGGGGTTGGTGGGATTTGTTAATCCCCCACTTTCAAGTTCTCAGCCTCTGTTCTTCCAGAGTAGAAACATTCTTTCTTAATTAAGTACTTCTTCCTTAAATCATAGCcagaatttctttgaatctgggctcagcctgattttttttttttttttcttgctagggCTTATGTGTCATAATAAATGAGGGactaggggtgcagctcagtgatgGACCACTTGCCTAGCTTGTGCAAGATCCTAGGTTTGATCACCACCACTGTGAAAGCAAATAGAACTACCCCCAAAATTAACAAGTGGG-TTGAATCAATATAAGGTATTTTATATCATGCTCTCTTGCCACAGGAATGTGGGGCTTCCATGATCGGGACTTGGCACTGAGAAAATCTTTGTATGCACTGATGGAAAAGGGAGTGGAGAAAGAAGCACTGAAAAGACGCTGGAGGTGGCAGCAAACACAGCAGAACAAAGAGGTAG

a score=11309
s chr3            96150756 252 + 160039680 AGAATAGAGAGCGGCTGTAACGCTAGGAGGGTTTGGATGGGTATTGCCTTTTAGAGTCAAGCCTCTTCTTACCCGTGCCTTCATTACTGCATGGTCT--CTTTACAGTCAGGACTGGTGTATACGGAAGATGAGTGGCAGAAGGAATGGAATGAATTGATCAAACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGTGGTGGGTAAGTGTGTCTTGGTGAGGGAGCAGGGATCATC
s HiC_scaffold_1 141418317 237 - 233722169 AGAATAGCGGGTGGTGACA-------GTGAGTTGGAGTGGGTGTTGCCTCTTAGAA-CTAGCCTGTAATTGT-------TTGATTTC--CCTGGCCTGTCTTCACAGTCAGGGCTGGTGTACACAGAGGAAGAATGGCAGAAGGAATGGAATGAACTGATCAAGCTTGCCTCAAGTGAACCGCGAATGCATCTTGGCACCAATGGAGCCAGTGGTGGAGGGTGAGTATAGCTAAGCCAGGGAGCAGGAATAGTC

a score=46007
s chr3            96151139 2419 + 160039680 TTTTTCTTGGGTTCCCCTACTAATAAAATGGAAGTAGCACCAACTATG-TAGCACAGAGTGGTCTGTT------GTGGAAGCTTTGGG---GTTAGAAAACCAGGGTGGGGCATTCTTT----TCCTTCACTTTGGAACTGGTCTC-AGGACTC----GTTTTGTTTCTTCCTTCTCCCTTCTGCTGTGCCTCCTCCATTCTTTCCTACAACCGTAGAGTGGAGAGCTCCGAGGAGCCGGTATATGAAAGCCTAGAGGAATTCCATGTCTTCGTCCTTGCTCATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTGGAGGGGAAGGTGAGTTAGCTACTTATCTTCATTCTTCCTCAAACTTCCTGTGTGTGGAGGCTTGGGGTGGGGGCTATACATTAAAACAGTAAAAACTTCTCAAGAGATTCAAACAAAAGCTCTTGGGATTAATTGGGATGGGATGCTCAACTGAAAAGTGGGAGTAAAgggctggagaagtgactcaatgagcttgcattgcttttgcagggaacccaagtttagttccaagcacccacattgggcagctcacagctgtctataactccatctccagggaacctgacattcacacacccatgtacatgcccccacacaaacactcatgaatacccatgatttaaaataataaaaataaGTCTTTTAGAGAGAAGTAGGGTAGACACTGAAGTAGCCAAGG---GCTCAGTTGGTAATAACA--------------ACCTTCATGGTTTCCTACAGCATTTGCCCCTATCCCATTTGGAGGGATCTATCTGCCATTGGAGGTTCCAGCCAGCCAGTGTCACCGATCCCCTCTGGTGCTCGCCTATGATCAGGCCCACTTCTCTGCGCTTGTGTCGATGGAGCAGAAGGAGAGCGCCAAAGAACAAGGTGCCTCGCCCAGCTGTCTGTGGCTGGTTTT---------------TATTCA------GAAGTGGAAATGATAGCTAAGGAAGAGGAAGTGACTGAGGAAA--CAGAAGGCCA------------GACGGTG-------------------CCAGTTTTTGT--------TTTTATTTTTTAACCAAGCTATACA------------------------------------------------------------ACATTACCA-------------AGAGTTTTTAACT--------TAAAAAAGA----GGGGGG-------------------TGCTTTGGTGAAAAGGGTGTCTCTGTCACCGCTGTTGTAGTGT---AAAGGTCTGTATTAGGTACAGGCTGC-----------------------ACTTACCTCTGTGGAGA-------GTAAGT--GGTTCACTGGCAGGGAGTCCAGGGTATTAATAGGCTAAAATGTATCCTGGGTGGTAAAGAGAAG-TAGCTCATTGGTGTTTAA-------TGTAATTTATTTATAAGTGTTGTGGATAGATAGACTGCAGTTAG--------------TCATAGGTGACATCGGTGTGTGTGTATCTGCCTTCTCCCATCTCAGGAGACTTTCTGACAGCATGT---GTTTCCCTCCCCAGCTGTGATCCCACTCACAGATTCAGAGCACAAGCTGCTGCCCCTGCACTTTGCTGTGGACCCAGGAAAGGGCTGGGAGTGGGGCAAAGATGACAATGACAATGTCCGATTGGCCAGGTAAGGCCAGCTTTGCATTTCCATATGCTTTCTCTATACAGTAGCTGAGATCTCCTCC------ACATGCAGT-----------------------GCCACATACCCACACTCT--TCTTAGCTCAGTGGTGGAGAGATGGA-----------AGGCTGGCCGGTCGTTGGGACACTGGCATCTGCAGCTGCTTTGTC---------------------------------------TTCTTTTCTTAGAGCAGAGCGAGTGTCCCTGC-CTACTACATCCCAGAATCCCC---AAAATAGTGATTAAAAAAGCAAGACAACCAAATCCTATTTGATTCTAAGCCAAAGTCAGAGGAGTTTCTAAACAAGTGACCAAAATAGTCTGCTTTT-------------------------------AAATTACATACTCT---CTCACCTA--------------GCACTAAAGCGTGCCTC-CATCTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTATCCCTGCCCTCCTACTCATTGCTTCCCTTTTGGGGCCTTTGCAACTTTGGGAGCTGACTGAGAGAGTCTAGTACTTTAAAAAAGTCCTTATagc----tgggcatggtggcccacacctca---------cctatcactcagga--ggttgaggcaggggaatgattgcaagttcagggctatgacagactacatagtgagcccctgtctttaaaacaaaaGAAAAACCAAAA-------GAGTCCTCACCTGA-----TGGTTAGAATTTGCTAAATGATGCCACAACAGAAATAATGGCAGC--------TGTTTGAT---------------------------GGCTGGTCTCTGGACACTGCTGAGTCCT---TTCTGAAGGACT-----------------------------ATTTGCCTTTGAAGTA-----ACAGCTG--TTTAATTTTTTTTTCTCTTTTTCACAGTATAATTCTGTCTCTGGAGGTGAAGTTACATCTGCTGCATAGCTATATGAATGTGAAGTGGATCCCACTGTCTTCTGATTCACAAGTGAGCACTGGTTCCCCCCAGAGCCCCTGTGTGTCCTCACTGTCAGCAATGAGAAGAACAAAGAGA
s HiC_scaffold_1 141419859 2681 - 233722169 TTCTTCTGAGATCTTCCCATTGGAGAAATGAAAGTAGAAACAACCATGACAGTGTAAAATAATCAGGCTCATCAGTGATAGCCATTAGTAAATTGGGTAACCTGGACAGGGcactctttattttccttttcttccaagCTGGTCTTTAGGGCTCTcttgttatgttttctt-tcctcccttctgtcctgctccttcctctctttGCTGCAATTCTAGGGTGGAGAGCTCGGAGGAGCCTGTGTATGAGAGCCTGGAAGAATTCCACGTCTTCGTCCTTGCTCATGTGCTCAAGAGGCCAATAGTTGTTGTGGCGGACACCATGCTGAGGGACTCTGGAGGGGAAGGTGAGTCATTCAGTT---CTCACTGAACCTCAGCATCCCCTTTTATGGCTGGTTGAGCTCTGAG--------GAGGGCAGGAAAGA-----------------------------GGGAATA--------------------TAGACACctggaggaaaagg---gaaaaat------atgagTTAGAACAA----TGCAGAATTCTTAATT-----------------CATTGTGAAGC-CACTGGTATTGATAAGAC--TTTTTAGGAAa--------------------------------------------------------------gaattattaaagaaa-----ttgGAATGAAAAGGGGGGACTAGTGAGGTGG--AAGGATTGCTCTCTAGGTAAGAACATAGTCTTAGTGATGATGATCTTGGTTTCCTGCAGCATTTGCTCCTATTCCCTTTGGGGGAATCTATCTGCCCTTGGAGGTCCCTGTCAGCCAATGTCACCGATCTCCTCTGGTGCTCGCCTATGATCAGGCCCACTTTTCTGCACTTGTGTCCATGGAGCAGAAGGAAAGTGCCAAGGAACAAGGTGCCGGATGCAG-TGTCTGTCTCTAGTATTGTTTGGTCTGCATAATGTTCACTTAGTGAAG-GAAAATGAGAGCTAATGTAGGGGGAAAGAATGAAGGAATGTACAAACCCAACATTACATGTTGACATTGTTTtacttagttttcttttcctctttttgttttgtttgtttgctttttgagtcttgctatgtagttcaggctggcctccacctcatggtaatcttcctgccttagcctccgagtgctgggattatgtcaccatgcccagctcattaaGGTTTTCAATTGCACACACCAAAAAAGATCTTGGAGAAGCACATAACTTATATTGATTGTTTTGGAGTAGGGGGCATATGTGTGAAGGTTATAGGACCTTCCAACAGAT---TCTTAGCTACATTTTCCTAATGACTTTGAATACTCTGAATACATACAGCTGGGGAGAACATGATGAAAGTTAGATGGACTGCTGGGAAGTCATTGAGCTTAGTGGCCTGTGTCATGTGCTGGGTGGTAGGGGGAAACCAGcctatttgtttttaatgttggGTGTAATTCACCTGCA---GTGATTGAGAAGT-GACTACAGTTAGAGGCCTGTGTGGTTTTAGTGAAGTCACCTGTGTTTGAATACCCTCCTT-TCTCA----AGGAGTCAGCTTGACTCTGTGTTTCGTTTTCCTTCTCAGCTGTGATCCCACTTACAGACTCAGAGCATAAGCTGCTGCCCTTGCACTTTGCAGTGGACCCAGGAAAGGGCTGGGAGTGGGGCAAAGATGACAGTGACAATGTCCGATTGGCCAGGTGAGGCAGTCTCAGCCTTTCCATCTGCTTT---------GTAGCTGGGATCTCTTCCCTGTGAGCATGTCGTGGGAATTTTTCCTTAGCTCAAGAGCAGCACACTCACATTCTAATTCCAGTTTGTT--TGAAAAGTTGCAAGGTATGAGCCAGGTTGGGCAGCAGTTTGGGCAT-----CTTGTAgcagctctgtctctctgtgaaaAAGttatgagtcctggtatttcaacttgttcatttcttacagtaggaagAGTGATCTTGTACTGATATACCCCAGAATTGCCAAAAAAATAGTCATCAGAAAATCAAGAGAATCAAACCAGTTTTTATG-TCAGCCAATGTGAGAGGAGTTT-TAAATAGTTGATTGAAATAGTTTGCTCTGGGTTTTTGTTTCTGGAATTTAGGCAGTAAGAAAAGTATACCCCTTCTACTCCCCTATGGCCCATCCTGCTTCCCTGTAGCCTGCTTAGCCTCCCCTCCTGAATTCCTCTGTCACTTCCTGATGGAGAACATAGGGTTGTAAAAGTCCTGCCCTTCCTTTGCACCTGGTGCTTCCTTTTTTGAGCCTCT--ATTGTTGGGAGCTGCCTGACTGGGTTTG--ATTTTAAAACCCAGTTTATAGCTTTTTAGAAATA--GGTTCTCATCTAATTTTGAAAGCCTCCttctaaataatatttaaagca--GTAATAATAGTGACT---------------Actgtttagtatttttttgtttt----------------ccaaaactgTGCTAAGCCCTTTccaaacacttttattttaatcttcacaacaatgCCACAGGTTAGATACTGTTATCAGAAACCATTTTTGACCCCATTTGAGTTTTAGGAAGATCATGAAGCTATAATTCAAACTCAGTTGAATCCTAAGCCATGGAGGACTCGATTCTTCTTCCCAACTATGtcacactgctttgctttgtaaATATGGTCACAGtgagtttttaattgtttttctccttcccacAGTGTAATTCTGTCTTTGGAGGTCAAATTGCATCTGCTGCATAGCTACATGAATGTAAAGTGGATCCCACTGTCCTCTGATGCACAGGTAAA-GGTGTCTCCTACCCTTGTCCTTATGTGTCCTCACATTCAGGGACAGGGACAGCAGGGGGA

a score=324090
s chr3            96154614 10781 + 160039680 [encoded data, 12329 characters]
s HiC_scaffold_1 141423726 11554 - 233722169 [encoded data, 12329 characters]

a score=53662
s chr3            96167765 1680 + 160039680 TGGACTCTGGGTTCTGA---TCTTGTCTTTCTTGTTCC----CTCTGTGCTAGACTCATCTGTAGCTGAAGATAAATGGCTCTCAGCCTTGGAAGGAACACGGTGGTTAGACTATGTCAGGTATGCCTAGCCTTCTAATCATGGTTAATAATTCCTACTTCTCCAGCCTTCTCTTGACTTAGGCTTCCCAATGGCCTTCCATCAATCCGCCT--GTTTTCCAAGACTGTTACTGTTGTTCAGGAGCAGGAGCAGGCACTTGGGAATCTGCTTCTCTTCCAATACATTACTCC----CTTCTTCATCACACGCC-------------------CTTCCAGGTCTTGTCTTCGAAAGGCCAGCGACATCTCAGTATTAGTGACATCTCGGGTCCGTTCTGTAGTGCTCCAAGGTGAGTTCCTTGAGCCAGC----TCCTTCCATTCCTTACCTCTGTCCT-TCCTGTGATTGGATGGTGTGGAAGGGAGCTTCCTTGTGCCCCTTTAGTACTAGCATCTTCCT----------------------GTGAGTGCCAA---TTCATCCTTCAG-AGCTACTCAGTCCCCTACTGTGAGAGCTGTCCCTAATTCCAAGCTGGTTTTAGACCTTCTTGCTCCTTCC-TCAGTAGATGGGGAAGG-GGCAGGGTGAGAAGGGCACTGGGAACACTGGTTGGGAAGTGTGGCTCTGCTTTCTC--TGTGACAATGGCTGTTTC------------------TAGA-AGTTGACTCATTTGGGTTTTCTTGTCACTTTTCTGTGCCCTCTCACTCCTGCCTTTCCCCA--CTTTCTTTTATGTGCCCCTCCCCCTTTCCCCGTGTTTCCTCTTCTCATTCCCTCCTGCCCTAGTTTCTTGGACC-CCCTTCTTTGTT---------TCTTTGTCACCCAGAGCTTGGGGATCGTGATTTCAATGGCCTCCTCTCCTCACTCGTCCAGCTGCTTTTGGCTCCGGAAGCCCGGACATTGTTTGGTTTCCAGTCACTAGTGCAGCGAGAGTGGGTGGCAGCTGGACACCCCTTCCTGACCAGGCTCGGGGACACTGGAGCCAGTGAGGAGGTGAGGACACTTTAGGTTTTCTGTCTGGAGTGG--GTTAACATTACTAAAGGGAAGAGGTGAGAAAATGA---TAAGGCCTAGCCCACTAGACACAAACCCGGTCTGAATGGGCT----GCTGGGCTGAGTGGACACTCAGGAGAGTCAGCCTTGAACCCCTACTCTACTCTCACTTCCTGTTTTAATCCCTGCCCTCCTTGGTGTCCTGTTCTGGCTCTTGT-TCTCC-----CCTTTGTCAGGTGCTTGCAGACACCCCCATGC----GACTGTTTTCTCTTCTCAGGCCCCGGTGTTTCCTCTCTTCCTTGACTGTGCCTGGCAGCTCCTCCAGCAGTTTCCAGCGGAATTTGAATTCTCTGAGTTTTTTCTTCTTGCTCTTCATGATAGTATCAGGGTTCCGGACACCCTCACCTTTCTGAGAAACACTCCCTGGGAGCGCGGGAAGAAGAGTGGACAGGTCAGTGACCTCT--TTTTAATTTGTTCCT--GTTGAGCATTTCAAACTTTGGAATTTGGTCTTGGTTTAGGAAGCTTGAGGTTTGGGGAAGGGGTTGGGGGGGGTGGGGTGGGTGCTCACTCTTAGGATCAGATTTTTGTTTTGTATGTGATGCCAGAAATAGG-AGGTAAGGTTTATAATTTGT-TCCAGGTGTAGGACAGGGACACAAACTGGTTTAACCAACCTTGTTTAAAATTTTT
s HiC_scaffold_1 141435739 1710 - 233722169 TGAATCCCAAGTTCTGACTTTTTTGCCCTTCTGACCCCTCTACCCTCTGCCAGACTCTTCTGTGTCTGAGGATAAGTGGCTCTCAGCCCTGGAAGGAACACGATGGCTGGACCATGTCAGGTACCCTT---CCCCTAACTCT-------AATTTCAGCTTCTCAA--CTTCTGCTAATGTGGCCTCCTAAACTGCCTTTGATGAACACTTCTCTGATTCCTAAGACTGTTATTCCTGCTTCTTAGAAGAGGCAGG-ATTTTGGAGTTTACTTCTGTTCGATCCCATGACCCCATGTCTCCTTTCTCTCAGGCTAATCATTTACCCCCTTCTTCCTTCAGGTCTTGTCTGCGTAAGGCCAGTGATATTTCAGTTTTAGTGACGTCCAGGGTTCGTTCCGTAGTACTTCAAGGTGAGTTTCCTGGGTCAGCCTGTTTCCTCTACACACTAACTCAATTCTGTTCAGGGAGCGA--GATTTGTAAAG----CTCCCTATCCTCTTTTAGTGCTAGCATTCTCCCCTCCTGTTACTAGTAACTACTCATGAGCTCTAACTCTTCATCCTTCAGCAGCGGCCCCACCTCCCACTA-GTTTGTTCCTCCTAACAGGAGGCTGTGCTAACCCCTCGCCCCACTTTCCATCAGTGGATGGAAAATGTAGCTGGGTGGAAGCTGACGTAAGAAC---------------CAATTCTGCCTCTTACATGTAAAAGTGGATATTTCGGTCTAGTATGAGAATCCTAAACAAGTGAATCATTCAAGCTCT-TTGTA--TTCTTTGTGTCCTCTCAATCCTGACTACCCCTAACTTTCCCCTTCTGTGCCCCACTTCTCCTTGCCATACTTCTTCCTCTCATTCTCTCCTGCCCTAGTTTCTTGGACTTCCCTTCTTTGTCCCTTCTTCCTCTTTATCACCCAGAGCGCGGTGATCGTGATTTCAATGGCCTCCTCTCTTCACTCGTCCAGCTGCTTTCAGCTCCTGAAGCCCGAACGTTGTTTGGCTTCCAAGCACTAGTGCAGCGAGAGTGGGTGGCAGCTGGACACCCCTTCTTGACtcggcttgggggaactggggcCAGTGAAGAGGTGAGAAAAATCTGGGGGGAAGGCATGGGATGGTGGGAGGCATTATTAAGCAAATAAGGGGAGAAAAAAAGCACATGGCATAATCTACAGAAGGTGGATTAGATTAGAAGGGTCTCAAGGTTAGGCTGAGCTTAGACTAGGATGAGAGAG------GCCATTACTTCAGTTAGGACTGCT-------CCCCTGACCTCTTTAATGCCTGGTTC-----CCTGTGTCTCCATTATCATTTCTTATATGTTTCTGTGAGCCCTCTGACCTCTAAATGTCTT-TCTTCTCAGGCCCcagtgtttcttcttttccttgactGTGTCTGGCAGCTCCTCCAGCAGTTTCCAGTGGAGTTTGAATTCTCTGAGTTTTTCCTTCTTGCTCTTCATGACAGTGTCAGGGTTCCCGATACACTTACCTTCCTAAGGAATACCCCCTGGGAGCGTGGGAAGCAGAGTGCACAGGTCAGTGACCACTGGTTTTAATTTATTCCCTAGTGATGTATTTTA-----------------------TGAGAAG--TGAGGTCTATGGGA------GGGAGGGGT-AAGTTAATGCTCATTGTCAGCATTAGACTTTTGCTGTATGTTTGATAACTGAAGTAGATACGAGAATTTCATGATTTATCTCTAGATTTGGAGTATAGTT----TTTTGTTTAAtcatctttttcttgctttttt

a score=146821
s chr3            96169776 5679 + 160039680 [encoded data, 6284 characters]
s HiC_scaffold_1 141437427 5643 - 233722169 [encoded data, 6284 characters]

a score=40550
s chr3            96176509  995 + 160039680 TGGGCTTTACTGTAGGA--AGGGTTAAGAATGGTGTCACTGTGTTTAAGTCATCAT------TGTGCACTCTTCTG------------TTTTCTTTGCTTTGGTTTCCTTTTTTGTCA----CTGTCTCCT-TGTGTGGTTTATC--CATAGGGATGTCCCAGATGCAGCTGGCCCACCATGGCCCCCATGGCCTAGGACACCCCCATGCTGGGCCTCCGGGCTCTGGGGGGCAGCCACCACCTCGGCCACCTCCTGGAATGCCTCATCCTGGACCTCCTCCAATGGGCATGCCCCCCCGAGGGCCTCCTTTTGGATCTCCCATGGGTGAGTGGGTGCTAGCCCATTTCTTATCTT------TGCCTTTGTGCAGCTTTCTTTG--CCCCTCGCCCTGTCTGGTGCCCTTTCTTTGAC--TTCCCACATTCCTGCTCTCATCCCTACTCATCTCCAC----ATTAGCTGCTTCCTG-TTTTCATTTTTGTTAAC---TCTTTTTCTTCCTGCAGGTCACCCAGGTCCCATGCCTCCACACGGCATGCGTGGGCCTCCTCCATTGATGCCCCCTCATGGATACACGGGTCCTCCAAGACCCCCTCCCTATGGCTACCAGCGGGGGCCCCTCCCGCCACCCAGACCCACTCCACGGCCCCCAGTTCCACCTCGTGGTCCTCTTCGGGGCCCACTTCCTCAGTAAATTGCCATCCTT--TGTCTCCTCCTTTTATCCTCCCTTTATCTTCATTTCTTGGACCAATCAGAGATGCTGTAGCTTGTCAAGGCTAATGTACTGACCCTTCTCAGTAACTCTGTCCCCATTCCAATGTCATGTTTTCCACTGGGGATTTTCTTCATTTTTATTTTAAA--------ATGTTGGTCCTAATTTCTTTACACATGTATAGA-AAAATAAAACTATGCTTCTTGTTTG--------------TTCTCTGGTGAAGTAACTTTTAGGAGGA---GTCTGGGTTTGTGGGAGGAACAGTATGAAAAAGGGAAGGTGTTTACATTGTAAGGATTTATCTTGCATGTACTTGGAATAGAGCT
s HiC_scaffold_1 141443647 1029 - 233722169 TGGTTTGTACTGTTGGGTTGGGGTCAAGGGTAGGGGCACT---TTTTACCCACCTTGTTTTCTGTATGCTTCTCTAAAGGTTTATTACTCTTCATTGTCTATGCCCTCTTCTCTAATGTCTTCTGTCTcctgtgtctgttttattttcatagggATGTCTCAGATGCAGTTGGCCCACCATGGCCCCCATGGCTTAGGCCATCCCCATGCTGGGCCTCCAGGCTCTGGGGGACAGCCCCCGCCCCGGCCACCGCCTGGAATGCCTCACCCTGGACCTCCTCCCATGGGCATGCCCCCCCGAGGGCCTCCATTTGGATCTCCTATGGGTGAGTA---ATCAGCCACTTTCTTATCTCACATAGAGCCT---CATAGCTTTCTTTGTACACTTTG---TGTCCTGTatgctttctttcactttttctatcttttttcactgctctct-ctcatctctcccaGTATCAACTATTTCCTGTTTTTCACTTGTactaacttttctttctcttcctgcagGTCACCCAGGTCCTATGCCACCACACGGCATGCGTGGGCCTCCTCCACTGATGCCCCCTCATGGGTACACTGGGCCTCCAAGACCACCTCCCTATGGCTACCAGCGGGGGCCGCTGCCTCCACCCAGACCTACTCCTCGGCCTCCAGTTCCTCCTCGGGGCCCACTTCGGGGTCCTCTCCCTCAATAGATTTTCTTTCCTCATGTGCTCACCCAATATCTTTTCTTCA-----GTTCCTTGGACCAATGAGAGTGGCTATGATTTCGTGTGGCTGAGGCACAGATCCCTCTCA------CCTCCTCcatt-taatgtgcatttcttcacaggaggtttttcttttcttttttttttgtcttttttacatTGATCCCATGTGTTTTGCAAGTgtgcagagaaaataaaactatattctttgtttactctttttggtattttctttgataaagttACTTTTAAGAAGAAATATCAGGGTGTG-GTGAGGAATGGTAAGGTAAAGTTCAGGGCT-------------ATTTATTTATGGTGAATTGGGAATAGAATT

a score=170082
s chr3            96179425 6469 + 160039680 [encoded data, 7335 characters]
s HiC_scaffold_1 141447243 6782 - 233722169 [encoded data, 7335 characters]

a score=111802
s chr3            96186844 4256 + 160039680 [encoded data, 5059 characters]
s HiC_scaffold_1 141455061 4824 - 233722169 [encoded data, 5059 characters]

a score=126932
s chr3            96192145 3466 + 160039680 TATTTGAAATGTTTTCTTCAGGAGCAGCTCCTAGGCCAGCAACAGGGCTTCTGTTTATAGTCAGCACAGGTGGACAAAAAGGATGAACAAGAAACAAAGACTAGTA--AAGCTCA-------------------------------------GATATGCCATGCCCAATTCTT-----------------------------------------GCTTATGGTCCCTCTGCTGAGAAAATTGTTAGTTCCCATGGTGATGTT---GGATGCTTTGCAGTGAGTGTCAGTGCTAATGCTGAGAGACCCTGACGTAGCAGG------------TCTCATGT---TGGCCCTGTGTCCTGACCTTC----TAGACCTATTTGAGTACAAGTTCGTGAACAGCCGGCTGGTGAACAGCACGTTCCTGCACAATAAGGAAGGCTGCCCGCTAGACGTGACGGGGACAGGCGAAGGTGCCTACATGGTGTACTTTGTCAGCTTCTTGGGGACACTGGCTGTGCTTCCTGGAAACATTGTGTCTGCTCTGCTCATGGACAAGATTGGCAGGCTCAGAATGCTTGGTAAGGGGCTGAGGGCTGGGTGCTGGCTGATTGGGAATAGAGGCAGCCAGGGCG--GGCTGTCAGCGTCTCATCTCCAGCTG--GAAACCATTGGCCAGAGAGCCTTCTCCTTCATGGTTTGTTTAGAGGTGCTGCAAAATGGGGGTGGATCTGGCAAAGAAGTTACTCTGGGGGGGGGGGGTTAAAGAAATAGGTAGGATGGTAAGCAAGTAGGGTATAGACTTTGAGGCTA--GATTTGAGGTTCAGCTCCACC-------TTGGACAGGTCACACCCTGTGAGCTTG-----CACCTGCAAT--------CATGGCACTTCTCATA-----GAGG---------------------------------------AAATAG-----------------------CACCTCT------------CTCAGAAGGCTGA-----------TCTCTCAGGTCCATAGAAAACAT---CCCATTACTTAGCTCA---TAGTTGGTATTGAATA-------------------AATGGCTGCTACTGAAACTGGTACTAA-CAAACACA--------GAGGTTGTGTGAAAAG-CCTTCCTTTGGCTACTCTGGGACACAGTT--ATCTGGAGTTGCCTCAAAGCCAGCCGGTGGCAATCAAAGCCAGCTGGTTGCAAGCTGGGCCGTGGCTGG-----GTTTCATTGTCGTCTCTTCTCCTGGTTCCAGCTGGTTCCAGTGTGTTGTCCTGTGTGTCCTGCTTCTTCCTGTCTTTTGGGAACAGCGAGTCAGCCATGATCGCTCTGCTCTGCCTTTTTGGGGGAGTTAGCATCGCATCCTGGAACGCGCTGGACGTGCTGACCGTTGAGCTCTACCCTTCCGACAAGAGGTAGTTTGGAGTGTGGTGGGCGAGCAGGGGAGGAGCTACAGGACTGGGGAGAAGCGAGGAAGAGAGCTGAGAGAATATCCTTAGGGAAGAGAATAGGGTGGAGGATAAGGATGTTGTTGGGGTAGGACACACATCCATGCTGAGCTTTTCCTTAACAGCTGGGAGCTTTTGTCTTCACTTCTGGAACTGCTAATTACTAACCTCTGCTTCTGTC-TCCTTTCTCTCTTGTCTCCCAACGTGTCTGTTGCCCCACCCCCTCCTGTCACTTCTCCATCCTTCCTTCCCGCTCCCGCACACTGTTTTCCTCTGACCCCACTTTGCCTTCCCACCTGCCCATCTTCCCTCTTCTGGACCGCCACCGCGCCGTGGCTTGGCACTGAGCAGGACTACTGCCTTTGGCTTCCTGAATGCCCTGTGTAAGCTGGCAGCTGTGCTGGGGATCAGCATCTTCACATCCTTTGTGGGCATCACCAAGGCTGCTCCCATTCTCTTTGCCTCGGCTGCTCTTGCCCTTGGTAGCTCTCTGGCTCTGAAGCTGCCTGAGACCCGGGGACAGGTGCTGCAGTGAGGGATGGGGGCTGTCTCAGGGGCTTTAGGGATGGCAGGCACACTGTGAGACCAATAATTCCTTTTATCCCTACCCTGCCCTGCTGTCCTGGTCCTCA------------CTCCTGTGTTTGGTGTCTTAGC--------------------------------TGTGTGTGCCTGTGTGCATGTGTGTGACCCTGATGGGCAGGGACTACAGGGACGGTCCCTTCGTTCCACTTTTGGGATGAGGTACTCCTT---ACCTGCTGCCACCCTCAACTTTGCACAAGGAGAAGGCTGCGCTGCATCCTTCTCTCCCCCAGTGTTAGCAGGGGGGC-TGTTTCCCTGCTCCGAGGGTTCCGGAA-----CTTCTGCCTTCCCCTTCTTTCCCTCCGCCTAGGCCCTGGTG-AACCACAGGTATGGAGTTATAATGGGGGCTGAGGCT-------------TGGACCAAAAGAACTTCTTGAGTGGGAAGGCCTTGGGTGCCCTCTAGCCTCCC-AAGGATGCTG-GGGAGTAGCAATAAACCTCAGCCCTCTGGCCACCATTTTCACCTCAATTCAGGCTACAAGTGTGAAGCCTGGATTTAATTTATGGAATTAGTTTTCTGAGTTTTATT------TATATGTAAGTTCTGAGGCAGCTTAGCTGGACTGTGTGTGGATGTATACATACACTCgtgtgtgtgcgtgcgcatgtgtgtgtgtgtgtACCATGGGGTAGGGGTACCACTCTACTGTCT---AATATAAGCCAAGAGTAGTAGTTTCAGTGA----ACACACACAACACTGTTTTTCTATAGTACCTCCCAGAATCTTGTATCTGTGCTGGGGCT-GGAGGCAGAACCCCTAGGCCAGGCTGGGATGAGTCCTGCAATCTTGGGGGACCTGAGGGCACCTGACAAGGACTCACTCT-CTCCTTG------------CTCT----AGAGAGGTTCTACC----CACTAGC---------CACAGCCCTCCATCTGACCTGTTCACACAGGCAGTGGACCAGAGGAAAGAAAGGGAGAATAACCAGGCACGTATGGTCAAACCAGCAGGTCCGAAAGCACAAGGAGCTGG-----GGCAGGAAGCAGGGGTCCGTCCCTAACCCTTCTCAAAA--------AGGCTGGGTCGTGAGGGACCCCTAATGCAGGGACCAGAAGCCTCAGTTTCCCCGTTTTGCCCTTCCACAGAACAGCCT-TGTAGGTAGAGCTGCCCCCGTCCTACCCTACTCTGTGTGGCTGCTTTC-TTTGGTACTCTCTCTCCACTCCCAACGTAGCTGTGACGTGTTGTAGTTTTTAGCTGTTTGTAAAATGTTAAAAAAAAAAAAAGTTAAAAGGAAGTTAAACTAACCACAAAAAGAAAAAAAAATCTAAATTCACCCTCCGTACGCTACGTCTGGTGCCCTCAACCCTAAGGCCATTCCGATTTTGTAACTGAACCAGGTGGTGACTGTTTAACTCTAGTGTCTGTGCTCAAAGGACTGCCTTCTCCTCCAGTGCCCAGTGTGTGAATGTGCGA-CCCTTCTTTCACCATTCCGTGGCTGGACGTAGCCTTCTCCCTTACTGCATCCCCAGGGGATACACATCCACCTTCCTG-TCTCCTGGGGAACCCTAAACCTGACTCCATTGATGTGAAAAAAAAAATGAAATGAAAAATACTGCTGAAAAAT-AAAGGGTTCGAACCCTTAAAACCCAAAGTGGCTGTGTCTGCTCCTGGCTTCTTCATTCATTCTCCCATACTGACTATCTGGGGAAGATAAACTAGTGTTGGAGAAACAATTCCTTCT
s HiC_scaffold_1 141460013 3666 - 233722169 tacttttaatatttttctcagaaaaattttcTAGACCCAAGGCACTGCTATGGCTTATTGCCA-CTTAGGTAAACAAAAGGAGTGAACACAAAGGGAAG-CTGGCCCCAGGCTCATGTTCTGACCTCTCTTGGCTCCAGCTGGTTCTAGCGTGATGTCCTGTGTCTCATACTTCTTCCTGTCTTTCGGAAACCTTGCAAAAAGTTAAATTGATCATTTatggtcattttgtctttataatttttagCTTCCATGCTGGTATTCTCTGATACTTTGTAGTGAGTATCCGGCATAAGTTTGAGAACCCCC--CCAAGCAGGGAGTCCTTTCCATCTTCTGTAACTGCCTGTGTGTCTTGGCCTTCACCCCAGACTTATTTGAGTACAAGTTTGTGAACAGCCGTCTGGTGAACAGCACGTTCCTGCACAGCAAGGAGGGCTGCCAGCTAGACGTGACAGGCACCGGAGAGGGCGCGTACATGGTGTACTTCGTCAGCTTCTTGGGGACGCTGGCTGTGCTTCCGGGGAACATCGTGTCTGCCCTGCTCATGGACAAGATTGGCAGGCTCAGAATGCTGGGTAGGCGG--AAAGGCTGGGTGGAGGGTAGCT-----CAGACCCAGCTAGGACACTGGCAGTAGGCTTCTCACCTTGGGCTGAGGGAGATACTGGTCTGAGAGCTTCCTTCT-CATGTGTTGATCAGGGCTGCTGCAGGATGCAG-TGGCCAAGGCGTGGAAGCTTCTCTGGAGGGTG------AAGGAGACAGGTAGATCAGTGGGCGTGAAGGGAGGAG-TTTTGAAGTTATGGGTTTGTGTCTTA-CCCCACTACTTCCTTTGGACAAGTTAGCCTTTCTCAGCCCAGTCACCACCTGAAACGTGGAAACCATGGTACCACCCCTATCTACAAGGCTGATAGATCGATGTATGCTTGCCCCATAGTCAGTTTTAAAGTAGTTgttaagctggatgtggtggcgcacttctgtaatcccagcactcgggaggctgaggcaggaaggttgttgcaagtttgagaccaatgtgggctgcaaaatgagctcaaggcaacctgaactgcatataaGATCCCCCATCAAAAGAATGGTTGTTACTGATTTTATTAATAAACAATTACAAGGACGTTGAGGATGAGTGAAAAATCCTTCTTCTGGCTACCTAGGAAAAGAGTCTCATGTGAGGTTGTCCCAGAGCTGGCCAATGGGA-------CCAGCTGGGTTCTCAGTGGGT-GTTGCTGGCCCCAGGCTCAT-GTTCTGACCTCTCTTGGCTCCAGCTGGTTCTAGCGTGATGTCCTGTGTCTCGTGCTTCTTCCTGTCTTTCGGAAACAGCGAGTCGGCCATGATCGCGTTGCTCTGCCTTTTTGGAGGGGTCAGCATTGCGTCCTGGAATGCACTGGATGTGCTGACTGTGGAACTCTATCCTTCTGACAAGAGGTAGTT-GGAGTGTGGTGGG---GTAGGGGAGCCGGTTTAGGGCTTAGAAG------GCAAGAGTGGGGTGAGAA-----------AGGAGGCTAA--------ATGAGAACATTTTTGGGATTAGAAGGACAt--------agcttttctctaaaagctggcAGTTTTTGTAATTGCTTCTTGCAGTTTTACGTATTAACCTCTCtctccctcatttttttttttttgttttc-----------tttcctccttgcctcccaatttttctgtattctttgtctGTGCCTTTACTCCCtgatctc-tctgtctccctgctggATTCTGTCCTGCATGT-----------------GGCACC----TGGGACTC----CTGAGCAGGACCACAGCCTTTGGCTTCCTGAATGCCCTGTGTAAGCTGGCAGCTGTGCTGGGGATCAGCATCTTCACGTCCTTTGTGGGAATCACCAAGGCTGCTCCCATCCTCTTTGCCTCGGCTGCCCTTGCCCTTGGCAGCTCTCTGGCTCTGAAGCTGCCTGAGACCCGGGGGCAGGTGCTGCAGTGACGGG--------GTCTCCGAGGCTTCGGGCATGGCAGGCGCACTGTGAGACCAATAG---cttttcttccctccctgccctgccaccctggcCCCCAGAACCCTCACCCCCCACTCCTTTGGTGTCTTAGCCggtgtggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgaccACTGTGGGCAGGGCCAGTAGGGAAGGCTCTTTCATCCCAGGTTTGAGATGAGGCGCTGCTTCCCACCTCCTACTGCCCTTGACTTTGCA-GATGAGAAGACTGAGCC-CACCCTGCT-TCCCCCAGTGTTAGTGAGGGGTCTTGTTATCCTGCTTCAGGGGTTCCAGAATAGGCTTCCcgctgtctccctccctccctctgcttaAGCCCTAGTGAAACCGTGGGTGTGCAGGTATGTTGTGGGCTGGGGCTTAGGTATATGCCATGGACCAAAAGAACTTACC-AGTGAGAGGGCTCT--GTGCCCTCACACTTCCCTTTGGATGCTGAGGGAGCAGCAATAAATCTTGGCCCTCTGGTCTTCACTTTCCCCTTAATTTGGGCTATAACTATGAAGcctgaat----tttatgaaattagctttctgattcttatttatttatatatttatgttttgagGCAGCTCAGCAGGCCTGTGTGTT--TGAA----------CGTGTGTGtacatttatgtatatgtgtatgtgtgccacAAGCTGACGGTGTCACTATATTGTCCTCAAATATAAGCCAAGGG----AATTTcaatggatacacacacacaatcctg-CCTCCCGTAGCACCTCCCTGAAGCTGGTGTCTGTGTTGGGCCTGGGAAGGAGAACCCCCAGGCCATGCTGGGATGAGGCCTGTGGTTTAGGGAGACCTGAGGGCACCTGACAAGGGCTGGCTCTCCTTCCTGTCAAGCCAAGGCCTCTGGAGGGAGAGGCTCCACCCCTACAGTAGCCAGGAAGTACACAGCTGCTTCTCAAAGCCCTTGTCATAG--------CTGGGAGCAGGAGAGGGAAGGCACCCAGGGA--TACGGTCAAACCAGCAGATCAAAAAGCACAAGGAGCTGGGGTGAGGCAGGAAGCAGGGCCTCCTGGC-AATCCCTCTAAAAAGTGGGGAGAGGCTGGGCAGTGAGAGACACCTAATGCAGGGACCAGAAACCTTAATTTCACCACCTCGACCTTCCACACACTTGCCTCTGTAGGTGAAGCTG-CCCCGTCCCACCCCACTC----TGGCTGCTTTCAATTGGTG--CCCTTTCCACCTCCACTGTAGCTGTGATGTGTCGTAGTTTTTAGCTGtttgtaaaatgttaaaaaaaaa-------agaaaaaagtgaaaataacaac-------AAGCAAAATCCAAATTCACCCTCTTCATGCTGCGTCTGGTGCCCTCAACCC-ATGGtcactttcattttgtaactgaaCCAGGTGGTGACTGTTTCACTCTGGCGTCTGTGCT-AAAGGACTGCCTT---CTCCAGTGCCCAGTGTACGAGTATATTCTCTCTTCCCTCACCCTTCATCTGCTGGACACAGCCCTTTTCC---CTGCACTCC--AGGGAGACCCAGCCATCTCCTTGTTCTCTTGGGGAACCCTGAACCTGACTC--TTGatgtg-----aaaaatgaaatgaaaaattctgatgaaaaataaaaggaaacaaatcctTAAAATCCAAAATGACTGTTTCTTTGCCTCTCTTCTTGTATTTTAAATCCATTCTGACAATCCTGAAAGGGTAAAATAGTGCT-GAAAAGTGACTCCCTCT

a score=5032
s chr3            96193139 102 + 160039680 AAGCTGGGCCGTGGCTGGGTTTCATTGTCGTCTCTTCTCCTGGTTCCAGCTGGTTCCAGTGTGTTGTCCTGTGTGTCCTGCTTCTTCCTGTCTTTTGGGAAC
s HiC_scaffold_1 141460108  95 - 233722169 AAGCTGGCCCCAGGCTCA-------TGTTCTGACCTCTCTTGGCTCCAGCTGGTTCTAGCGTGATGTCCTGTGTCTCATACTTCTTCCTGTCTTTCGGAAAC

a score=36322
s chr3            96196471 1405 + 160039680 ccgaaaattactctctgac-acccaagtgcgcagtggTGTTATGCAACCTCCCCCAGCCCCCATATGCACTAATGATGTGTAGCTCCAATTTAACAGGTATTAAGAGCACCGTTTGACCTCATGCACCAGCTTCTCTTTTATTATCATGGCCCTTTC-------------CGATTCATCAGGACCTTTCTCTAGTCTAGCCCAGGCAAGGGCAAGAGGGAGGGAGTGGCTGCTCTCTCCCTGGGCTAGCTTAGCTTTCACCAGAGGTGTCTTTGCCTCTGCATGGTGTTCAT----TAGCAGAAAAGGC---AGAGCTCCTGGTCCGTACAAATCAAGGAATAAGGTAGTAGTGATGTAGTAGTTTATTCTCAGTCGACCCATTCGGATCGTTCTCCCAATCCAGGTATTTATTAAGAGGTCCCTCGAGTTTTCTTGCTCCCACCTAGGCAGGGGGGACTAATGTCCAACTGTGGGTTTTCTCTCCACTGGGCGGGGGTCTTCGCCTGGATGGCCAGGGCATGTACCGGTCCAGCCAGCTCCTCCGACAGTGCCTCGTGGACCAACCGGTGCCGTTGCAAGGGGCTCATCCCCTCGAAACGAGAGCTCACCACCGCCACGCGAAAATGCGTCTCGCTGCCTGCTGGGACTGCGTGGCCACCGCTCTCGTTGCGCAGCTCCAGTACCTCGGGGCTCAGGGCTTGCTCCAATTTGGCGCGAATAGCGGCTTCCACTGGTCCTGCAGCCGCAGATCCCGCGCTGCCCCGCGATACACACGAGCGCGTGGCCATGGAGACCATGCACTGGGCCGATCGCGCACTTAGCATTCGCTGCGG-AGAAACGAAGGACACGGGACTGA------------------------GTCCACACACCCTGCCCACGCACC-----------------------CCAGACAAGCACACCCTGGAACCGCCTCTACTCTGCGTGGCGGGTTAACGCGGCTTCTACGCC---GGTAGCGGAGAGACAAAGGCGATTGAGCGGC-----CAGAG--CGCTAGGCACTAAGGGCACTGGGAAAGCATGGCTGGGAGCTG-AAAAATGGAAAATGTACAACTTGGTCCTTTTGGCTGAGTCAGAGCCCTATCGTCTCTCCGAACCCTAGGGTGGTACCTTTGTACTTGCTGCGCAGCCTGCTGTACCACCGCTTGATCTAACAACCGAATTTCCGGTCGGACCACGCAAACGCCGCGTCAGGAGGCTCGCTAGGAAACGCAGTCCGGTTGCGTCTGGCAGGCGTTACCCA-----------GTACCCAGAGGTTTTATGGGAATTGTAGTCCCTGCTTCTCCCGACCGGTAAAATCCTGCAAAGTCGGGAAATTAGAGCAATAAA--AACAAAAGTGTTTCCTGTAAATTT-------AAGATGGTTGCACCAGATTTGTAGCTTCTTGATCTATAACCCAAATAGCTTAAGTCATTTGTATGTAATTAATAAAAAAAGAAgtc
s HiC_scaffold_1 141465382 1390 - 233722169 CCAAGAATCCCCTCCTGACCACCCAGGCCTATAGTTGTTCTGTAGAACC-------GCTTCCATATGCATTAACAAT--------------------------ACAGCAATATGTCTCATTATg----atcatttcttttaatatagaGGTTGTTTCATGACTGGTGTCACAATTTAACATGGAAAAACTAT-GAAGGGTCCAGGCAAGAGCAGTAGTATGTGACTGGGTTCACTCT--------------GACCTTCAATAGG-------TTATCTCTAGAGAATATACATGTGGCAGCAGAACAGGTCGTAGGGATCTTTGTCCTTTTGATTTACCATATCAAGTACTTAT-----------TTATTGTCACACAGCCCCTTCAGATTCTGGCCCTCCTCTATCTCAGAGTCAAGGTGTTCATCGAGTTTTCTTGTTCCCACCAAGACAGGGGGGGCTTGTATCCATTTGAGAGTTTTCCTTCCACTGGGTGGGGGTCCGGGCCTGGATGGCCAGTGCGTGAACAGGCCCGGCCAGCTCCTCTGACAGCGTCTCGTGGATCAGCCGGTGCCGTTGCAGGAGGTTCATTCCCTCAAAGCGAGAGCTCACCACCGCCACTCGGAAGTGTGTCTCGCTGCCAGGAGGGACAGCATGGCCGCTGCTCTCATTGCGCAGCTCCAGCACCTCGGGGCTCAGGGCTTGCTCCAGCTTCGCGCGGATGGTGGCCTCCACCGGACCAACGGTCCCGGATCCCGCGCTGCCCGGGGACAAACACACGCGGGTGGCCATGGAGACCAGGCGTCGGACCAGCTGCCCACTCAACATCCGCTGCTGCAGAGACAAAGATCGGAGAACTGAGGGCCTTTGCCTTCACTACGCACGGTCCGCACAACCAACCCTTTCCCCAACGATATCTACCTGCCTCGATACCAGATCAGGAGGCCGCAGCACCGTCTCTGCTCGGTGTGACCTGTTATTGTGGGTTTCTGGCTTGAGGAAGTGGAGGGCCGAAGGCGATTAGAGGTCGGTTTCAGAGGTCTCTGGGTACTAAAGGGATTTGGAGGGAATCGCTGGAGGCTGCAAAAATAAGGTATGTGCAATTCCGTGCTTTGGG-TGAGTCAG---------GCCTCATGAAGCCCAAAAGTGAGCCCTTTTTACCTGAGGCTTAGC------TATAGTCACTGCAGCTCCCAACGGAA------GCCAGCATACGGAA-------GTCCCAGGGCGCGCTGGGAAATGTAGCCCGCTCAATCCCCGAAAG----ACCCGAAGCACCACGTGTACCCCGGGGTTTGATGGGTATTGTAGTCTCCAGTTCGACCGACTCGAAAGATCATGGACGTACCG--AACTACGTCAGTGAAACAGAAAAGGGATTTCCTGCACAGTTAGGGTCGAGGATTATTTCATCAGTTTTATCGC--------CAATAGCTCATCCAGCCCC--TACTTTATTTTagatagaagaaaacagaagtc

a score=105586
s chr3            96219009 3328 + 160039680 TTGGTACCTGAAAGTTTTTGGGTGCAATTCTTGGGATA-GGGCAAAGGAATGC----------------AGAGCTCATGTTTCAGATGCTAATATGATGCTTGTTGAGACAAACGAG-TTAAACATTTAGTAAACGCCTGA-TACCGGAGTCTGAGCTTGTGAAGCGAATCTGAAT--TAGC----TGGAAGCTTGTAAGCCTCGCCAG----AGGGAAGAGCTGGGGATAGG---------------ACAGTTCAGCTGAACTCGCGGATTTTTTAGTGGGGAGAGAACCGGA---GCAGGGTAAAGA--------AAACCCCAGATCAAACGAGGACATCTTAAAAGCTAGAGGGAA-----AAGGTGGTGGCAGACACCTCCTAGAGGTCAAAGACGATGGATACAATGTCATC-TAGCCCTTGGTCAAAC--------------------GACCCAGGGGCAAAGATGGGGAGCCA---CTG--------TCAAGGGTAAGGAAGCGAAGCAACTTTCCTAATTCCTTTA--CGGAGCCTGCTTGTG------TGAGACA--------------TGGAGAGTAATTTAAAGCTCCGGGGTGGGGGTGGGGACAGAGCAAAATCCCATACTTCAAGGGGAGTGTT-TCGAGTTTTGTGCTCTTGGTTGTTTGTTTAGATTTTTCAGCTCTAAACTGGGCAAACAAA--------ACAAACCTCTATAAATTACCACAATAAACAGCTCCGCGAAATTCTTCTGCCCTTAAAATCCTACG-ATGTAAGTGAGGGCCTTTAAATGTGGCTCTCATCGATTGGTAAATTCCTTTTTCAAAAAATTCGTCATTTCCTGTACTGCAGGATGTAAACCACCGA-GTCTAGCTTCTGCTTTCCCATTGGCTGTTGGAGACAGCTCCATTTTAAGCCAATCAAGCTACTTTTCCTTCACCCCTCCCGATAGATCTTATAAATT----CA----------CCTTTCCATATCCTTCCCTTGGAAAAAGCAGCAGAAATTGCTT---ATTCCGCCATGTCTGGCCGTGGCAAACAAGGAGGCAAGGCCCGCGCCAAGGCGAAGTCGCGGTCGTCCCGCGCCGGGCTGCAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGCGTGGGCGCCGGCGCGCCGGTGTACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCATCTGCAACTAGCTGTGAGGAACGATGAGGAGCTCAACAAGTTACTAGGGGGAGTCACCATCGCCCAGGGCGGGGTCCTCCCCAATATTCAGGCTGTCTTACTTCCGAAGAAAACGGAAAGTCATAAGCCTGGAAAGAACAAATAACTA---TTATCCCTTTCCACACAAAAAGGCTCTTTTAAGAGCCACCAAAGTGTCATCCAAAGGGCTGGTCACAAACTGGCGCGTTAGCTAGCTCCTTTGTAAAAGATTTGGTGGCTCTAAAAAGAGCCTTTTTGGATTCGTGTTGAGTTTCACTTGCTCTTAGCCTTGTGGCTCTCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGTGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGATGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCGCCCACGCGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCCTGTTTGCCACGGCCAGACATAACTTAGAGTATAATGTAGGACACAC-CGAGGTGACAACTTCTG------------TAAAGCTAGGTTGATTCGTCTCTAAGGCCTTTATAGGCGCTCCTAGGGG-TGGGGTGAGGAGGGAGCTTTTC-ATTGGTGGTTATTTGGCCCCTGAGAAGTCCAATGAAATCTGAAATT---------TTAGGCTTGTACTGAAAACGCAAGTTTCGCGTATGGGCCAATGGAAATTAAAAGTACTTTGAGACCTAATTTGCATAAGGCGTTCATAAAGGGCTCAAGTCCTCCGGGTCCCTGGTTGATTTTCTACTTACTAGACTGTTTTCCACTGTTTGCTTTTAATCATGCCTGAACTGGCCAAATCTGCCCCGGCTCCCAAGAAGGGTTCCAAGAAGGCTGTCACCAAGGCGCAAAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAAGTGCTGAAGCAGGTGCACCCGGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGCATAGCAAACGAGGCTTCTCGCCTGGCGCATTACAACAAGCGGTCTACAATCACATCGCGGGAGATCCAGACGTCGGTGCGCCTTCTACTGCCCGGAGAACTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACACCAGCGCCAAGTAGAGGCCTCCCTGGATGAGGCGCTCGCTGGCCCCTTTGATCTTTTAAAGTCTCTTTTAGTGAGTCACCCGCTCAAATCAGAAGAGAGCTTTGCCACTTGCATTAGTTTCTAGTTCCTATTCCAAAGTTACT---CCAAGGGTCTTGAAAAGGGTACACTTCAGAAG--TTTTAAGCCTTTGTGGTTTTGAGTTCC---CCTGTG----GGTATCTGTTTGCAGTTTG---CTGCACCCTACTTAGCT-TCTTGGAGTTCTTTTTAGACTAGGATAATGGAGGTGGGTCTCTGGGCCCGGTTTCCGTGT----------TCTAGGCTTTTGGGGTACCATTTACTTGTCGACTTAAAGTGAGATG---GTTTCCTTACCCTGGCGAATAGAGGGCTCCAGGACACAGCTAAGACTGTGTCGGCGAATGCTGGGTAC-CAGCCATCTACAACTGAAAC-------CGCTCTGTCCCTTTACT-------------------TGTGTCC--TGGGCACCAGCGGTTACGGGGTACTTAG--------GGTGGT---GTCCCTCTAATTTACTGATTTACAAACACGAATGTTC-------CACGTTGCTGCCGATTTGGTAGAAGTCGGTTATGGT--TCTCTATCAGGCTTTAAAATCCCTGTTCGAGGCTTGCTTGGTTTGTTTTGTTCTGTTTTTGTTTTTCCTTTTAATTCTTTGCTTTAACCTCTGCAGTGCCAGATTACCGC-AGGCTACTGCTGCT----------------TCTCTGGGCTCATGAAGCGATCTTTC----GAATCCACACACGCAGGAATTAG-----CTTTTTCCCTCCTGTCGTGTC--TCCAGGAGAAGTTGTCTCAA----GTTCCCTTTGCTTTCTTATTTA
s HiC_scaffold_1 141471704 3461 - 233722169 TTGATACCTGGAGTTTTGTTGGTACAATTCAAGGAAAGCGGACAAAGGGGAGTGTGGGACTTGTTTACAAGAGTTCACGTT-CTGATGAT--TAAGGTGCTTTTTGGAACAAAAGGGATGAAGTATCCAGTAAGCAATTAAATGTCAGGAtctgaatttttgaaataaatgtgagTGTTTGCAGTACGGGAGTTGATAAGACTCCTTGGGATGAGTGAAAAGATGGGGATACGCAGTCTAGGTGGGATAGAGTCCAGGTGGGCTTGCGGGTTTAG-GGTGGGCAGAGGAATAAATAAACAGGATAAAAAGTCAGGCGAGA----AGAACAGAGAGGGACATTTTGAAAGCCACGGGAGCGTTTCAAGGCGGTAACGGAAGCCTCCTGGAGGTCGA----GAGGAAGACAAATCCATTATAGTCCTTGGCTAAACTCGATTCCTCACCGCGCGAGGTtcgggtggtggtggtggagggcgGAACCTGCGACTAAATTGAAGGTTGAGAAAAGAGAAAGCCTTAGTAGTTAATTTTATCGGACTCTGGCTGTGACAGGTTAAGACAAAGGGATTATGGATTGCAGAGTCCTTTA--TCTTCGAAGTGTTGGT-------------------CTACTT-----GGAGTCTTCTTGAATTTAGAGGTCTCTG----------GGACTTTCCTGCTACAG-CTGTGAAGGAAAGTGCCGCACACTGACActcttaaaacaggaaaaaaatcttatttgaaaagtttttct--ctttaaaaacgcTCGCGTGCAAATAAGAGGCTTTAA-TGTGGCTCTCAGTGATAGGTAGATTCTT-----ACAGATTCCGTCACTTCCTTTAGGCAAAGGCGGGGGGCGGGGTTGTCTGTTTTCTGCTTCCCTATTGGCTATTTGATCCAGGTCTGCGTTTAGCCAATCAGACTACTCC-CCTTCACCCCTCCCTGTAGCTCTTATAAATTACATCAAATTAGTTATTCTTTCCATATCTCTCTCCTTGAAAAAGAAGCTACAACTGAGTTAAAAGCCGTAATGTCGGGACGCGGAAAGCAAGGAGGCAAGGCTCGGGCTAAGGCCAAGTCGCGCTCCTCTCGCGCCGGGCTGCAGTTCCCGGTGGGCCGAGTGCACCGCCTGCTGCGCAAGGGCAACTACGCCGAGCGGGTGGGGGCCGGCGCCCCAGTCTACCTGGCCGCGGTGCTCGAGTACTTGACGGCCGAAATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAATAAGAAGACGCGCATCATCCCTCGCCACCTGCAGTTAGCGGTGAGAAACGACGAAGAACTGAACAAGTTACTCGGAGGTGTCACCATTGCCCAGGGCGGCGTCTTGCCCAATATCCAGGCTGTCTTGTTGCCCAAGAAAACGGAGAGTCACAAGCCTGGCAAGAACAAATAATTAAATCTGCCCCCCTTCACCCAAA--GGCTCTTTTAAGAGCCACTACAGTGTCAAAGGAAGGGCTGATCACAAAATAGCGCATtaggtttattttttgaaaggagTCTTTCGGTCTTG---------TTGCTTGGTT--TGTcaggttttatttgcttttggctttgcaacttt--gttttctttggtaaCAGAACAGCCTGGATGTTGGGCAGAACGCCGCCCTGGGCGATGGTGACTTTGCCCAAAAGCTCATTCAGCTC---ATTATTGCGGATAGTCAGCTGCAAGTGGCGAGAGATGATG-------TTTTCTTGTTGCGGCCCGCATTGCCCGCCATCTCCAAGATCTCAGCCGTCAGGTAATAGAGCACCGCAGCCACGTAGACTGGCGCGCCGGCCCCCACCTGCCTGGCGTAGTTACCCCTGCGCAGCGGGCAGCGCACCCGACCCACCGGGAACTGCAGCCCGGCGCGCGAGGAGCACGACTTGGCCTTGGCGCGGGCCTTGCCTCCTTGCTTACCACGGCCAGAGacagatataaaaaagaaataggtaaTACATAAAGTGCAGAATTTCGCAATAAAACGACTAAAACAGGGCCAAGCAG-----GAAGTCTTTATAATCTTTCCTAGGGGGTGGGGTCAGGAACGAATTCTCCCATTGGTTCTAGCTCGGTTTGAGAAATGACCAATAGAGTGAAGAATCGTCGTTCACTTATGCTT-TACTGAAAACGGAAGGTCCCTATATAAACCAATGGGAAAGAAAGACCTTTTGAATCCTAATTTGCATAACGCGGTTATAAAAGGGTCAGGTTCATCCTTTCTCATACTTCTTTCCT--TGGCTAAGCT-TTGTTGGTGGTGTGTGTT--ACTATGCCTGAGCCGGCAAAATCCGCTCCGGCTCCCAAGAAGGGGTCAAAGAAAGCTGTCACCAAGGCTCAGAAGAAGGACGGTAAGAAACGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTACGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAGGCGTCGCGCCTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAAGTGAGTGCCGCTC-GTACTTGGCGCTCCCGGTCACCCT-----TTGCAAAGGCTCTTTTCA-GAGCCACCCA-TCTCATCCAAAAAGAGCTTTGC---------TCACTTCTGTTTTCTTGTCAGAAACAACTAGGATAAGGTTATAGCAGATGGTGCAT----GAAGCTTTTTGAGTATTTCTAATTAGAAGTTTTTGGTTTGTGATTCGATTTCCTCCTGTAGTTTATGTTTACTCCTTCCTTAGGTGTCACAGATGTCAATT----CCAGAAACTTGTCCTTGGTGACACTGCCCCTCTTCCCATCTCAGGCATATGTCCAGGCTGCTCTGTTAAGAATGTTTCATAGATCTAAAATCAAATGACTGATTCCCTTCGACCGTGATTTAAGGGGACTCGGACACAGCTAAGCC--------CGAATCCGGTGGACATAGCTTTGTAGGACTAAAGCTTGGCGGCAGTTTGTGTGTTCTCTCATAGGTTCTACCCTGCGGTGAGTCCTGTGGATGCCAGTGGTT---GTGTACTTGGCAAAGACTGGCGGTCAAGTCCTAGCCTTTTTCTGATTGGGCgacatgaatatttaaaattacccGCCACTGCAGATTTCTTAAACCTCGGTTACCGTTATCCCTTTGGGACTTAGAAATTCCTGTT-----ATTTCTCGGTTTG---AGAACCGGTTTTG------CATTTAAATC--TGCTTGGGACGCTGCGGCCTCAGGTTCTTGCAAGGCTCTGGCCATTTTGATACTAGCACGAGTCTCCTGGAAGAGAAAGATCTCTTCCAGGAGAAAGCATTCATTCAAGAATTCGTGCTTCTCTTTTCTGCCTGTTTTGCCTTTCTCCTAGCAGCTGTCTGAAATTGGTTTCATTTGCTCTCTAGTTTA

a score=27714
s chr3            96219910 398 + 160039680 CCGCCATGTCTGGCCGTGGCAAACAAGGAGGCAAGGCCCGCGCCAAGGCGAAGTCGCGGTCGTCCCGCGCCGGGCTGCAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGCGTGGGCGCCGGCGCGCCGGTGTACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCATCTGCAACTAGCTGTGAGGAACGATGAGGAGCTCAACAAGTTACTAGGGGGAGTCACCATCGCCCAGGGCGGGGTCCTCCCCAATATTCAGGCTGTCTTACTTCCGAAGAAAACGGAAAGTCATAAGCCTGGAAAGAACAAATAA
s HiC_scaffold_1 141506800 398 - 233722169 CTGTGATGTCTGGCCGAGGCAAGCAAGGAGGCAAGGCCCGCGCTAAGGCCAAGTCGCGCTCCTCCCGCGCCGGGCTGCAGTTCCCGGTGGGTCGGGTGCACCGCCTACTGCGCAAGGGCAACTACGCCGAGCGGGTGGGTGCCGGCGCACCCGTCTACATGGCGGCTGTGCTCGAGTACCTGACGGCCGAGATCCTGGAGCTGGCTGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCTCGCCACCTGCAGCTGGCTATTCGCAACGACGAGGAGCTGAACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGTTCTGCCCAACATCCAGGCGGTGCTGCTCCCGAAGAAGACGGAGAGTCACCACAAGGCGAAGGGCAAGTGA

a score=59861
s chr3            96220363 1281 + 160039680 AAAGGGCTGGTCACAAACTGGCGCGTTAGCTAGCTCCTTTGTA----AAAGATTTGGTGGCTCTAAAAAGAGCCTTT---TT----------------GGATTCGTGTTG---------------------AGTTTCACTTGCTCTTAGCCTTGTGG---CTCTCGGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGTGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGATGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCGCCCACGCGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCCTGTTTGCCACGGCCAGACATAACTTAGAGTATAATGTAGGACACACCG-AGGTGACAACTTCTGTAAAGCTAGGTTGATTCGTCTCTAAGG-------------CCTTTATAGGCGCTCCTAGGGGTGGGGTGAGGAGGGAGC-TTTTCATTGGTGGTTATTTGGCC----CCTGAGAAGTCCAAT--GAAATCTG----AAATTTTAGGCTTGTAC-TGAAAACGCAAGTTTCGCGTATGGGCCAATGGAAATT---AAA----AGTACTTTG-------AGACCTAATTTGCATAAGGCGTTCATAAAGGGCTCAAGTCCTCCGGGTCCCTGGTTGA-------------TTTTCTACTTACTAGACTGTTTTCCACTGTTTGCTTTTAAT--CATGCCTGAACTGGCCAAATCTGCCCCGGCTCCCAAGAAGGGTTCCAAGAAGGCTGTCACCAAGGCGCAAAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAAGTGCTGAAGCAGGTGCACCCGGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGCATAGCAAACGAGGCTTCTCGCCTGGCGCATTACAACAAGCGGTCTACAATCACATCGCGGGAGATCCAGACGTCGGTGCGCCTTCTACTGCCCGGAGAACTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACACCAGCGCCAAGTAGAGGCCTCCCTGGATGAGGCGCTCGCTGGCCCCTTTGATCTTTTAAAGTCTCTTTTAGTGAGTCACCCGC----TCAAATCAGAAGAGAGCTTTGCCACTTGC
s HiC_scaffold_1 141493663 1358 - 233722169 AAAAGGTCGGGAGGAACCTGGATCTGTTGACAACTCCTTTTTACTTGAAAGAGTGGGTGGCTCTGAAAAGAGCCTTTGATTTCACAAGCGCCCCTCAGGGGCGCGCGTTGCGCGGGGGGCCTCCGCCCGGAGGCCTCACTTGCCCTTCGCCTTGTGGTGACTCTCCGTCTTCTTCGGGAGCAGCACCGCCTGGATGTTGGGCAGAACGCCGCCCTGGGCGATGGTGACTTTGCCCAGCAGCTTGTTCAGCTCCTCGTCGTTGCGAATAGCCAGCTGCAGGTGGCGAGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCAGCCAGCTCCAGGATCTCGGCCGTCAGGTACTCGAGCACAGCCGCCATGTAGACGGGTGCGCCGGCACCCACCCGCTCGGCGTAGTTGCCCTTGCGCAGTAGGCGGTGCACCCGACCCACCGGGAACTGCAGCCCGGCGCGGGAGGAGCGCGACTTGGCCTTAGCGCGGGCCTTGCCTCCTTGCTTGCCTCGGCCAGACATCACAGCGACC-----------CGCACCACAAGCAGCTACCACTCAAACACCGGGAAAAC-CGTCGCGAACGGTGACGCTTCACCCTTTTATAG-----CCAGAGCGCGGATTGTCCGCGAAGCACGCTCATTGGTTAAAACCTGGCTTTGGCCTGAG--GGCCAATAGGAGAGCTTGGCCAGATTCTACTCATTTACATAATCTCGTCCCCCACGCCTCCGCTCCGCTGAGAACTCGCGAATCGCAGCGCTGCGCGTCCGAAACCCTCATTTGCATGCGGCCTCTATAAATATCCTGGCGTCGCGGAGTGCCCCGCCGGGCTGGCGCGGCGCTTGTCTACTTGTTAGG--GGTTATCCCTGGTGGCTCTTGGCGCCATGCCGGAGCCGGCCAAGTCCGCTCCGGCTCCCAAGAAGGGCTCCAAAAAGGCTGTCACCAAAGCCCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACGGGCATCTCGTCCAAGGCCATGGGCATCACGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGCGAGGCGTCTCGCCTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAAGTGAGTGCCGTTC-GTACTTGGCGCTCCCCGGCCACGCT----TTGCAAAGGCTCTTTTCA-GAGCCACCCACCTCGTCAAG--AGAAGGAGGCCTGTCCTCATGC

a score=27237
s chr3            96221165 384 + 160039680 ATGCCTGAACTGGCCAAATCTGCCCCGGCTCCCAAGAAGGGTTCCAAGAAGGCTGTCACCAAGGCGCAAAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAAGTGCTGAAGCAGGTGCACCCGGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGCATAGCAAACGAGGCTTCTCGCCTGGCGCATTACAACAAGCGGTCTACAATCACATCGCGGGAGATCCAGACGTCGGTGCGCCTTCTACTGCCCGGAGAACTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCCGTCACCAAGTACACCAGCGCCAAGTAGAGG
s HiC_scaffold_1 141525569 384 - 233722169 ATGCCGGATCCGGCGAAATCTGCTCCGGCCCCTAAGAAGGGGTCGAAAAAGGCTGTAACAAAGGTGCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAAAGCTATTCGGTGTATGTGTACAAGGTGCTGAAGCAGGTCCACCCGGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAGGCGTCGCGCCTGGCACACTACAACAAGCGCTCAACCATCACGTCCCGTGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCAGGCGAGCTGGCCAAGCATGCCGTGTCAGAGGGCACCAAGGCGGTCACGAAGTATACCAGCTCTAAGTAAGGG

a score=80172
s chr3            96238459 2145 + 160039680 ACAGCTCTTTCCGGGAAGCTGTGGT-GGCTCTGAAAAGAGCCTTTGTGGGGAATGGATGGG---AGACAGGGCGC-----------TTAAGCGCGCTCCCCACGGATGCGGCGGGCCAACTGGATGTCCTTGGGCATGATGGTGACGCGTTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCCACCAGGTAGGCCTCGCTCGCCTCCTGCAGCGCCATGACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGGCGCTGGAACGGCAGCTTGCGGATCAGCAGCTCGGTCGACTTCTGGTAGCGCCGGATCTCCCGCAGCGCCACGGTGCCGGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGGGCGCTCTTGCGGGCGGCCTTGGTGGCCAGCTGCTTGCGCGGGGCCTTGCCGCCGGTGGACTTGCGGGCAGTCTGCTTCGTACGGGCCATGGCGAAGACGGAAGACACCCAAACGAGG-AGCACTCGGGGACCTGATACCGGCCCGAGCCGGC------CGCCTTTATAGGCGCAGTCTTCCCCGCGGCGGGGCGGAGACAGCGACTTGAAACTCCCGCGCTGCCGCGCCATTGGCCGTGGCGTCACCGGCCCCGACCTCGCCCATTGGCTCGGGCC-CGCCACGCCACCTGACC-CGCCCCCACCCGCCCCCCACGTCCAGCCCCGCGCCCGGTCCACTTGCCAACGTTCTGCGAGGGTGG-----------------------AGCCACGTCTGGCAGCTGCCCGTAGAGGGCGGGTC--CCGGCTCTGC---------------------CCAAGAGGAGCTcgcgcgc----------ccccgcccgccgcccAAAGTCCCAGGGCAGAACTAA---TCTAGTGTTTGTGCAGCACCGcccagccacagccacagtcccag---ccccagtcccCCATGATCCCTAGAGCCGGCCGCGTCCAGTC-CTCGCGGGACACCTCCTCCT---------------------CCTAGA------------CATTCCCCA-------------AGGACCGGACGAGAGCGCGGCTGA--------------------------------CTGCG------ACTTATGTCTAGATTGGCCTAGA-----------CGTCCTAGTTGAGTCTTAGTCCTGGGAAGGGTCAGGCGGGTGGACGCTGAGTGAGGGACA-------------------GTGTTGTGTAGGACAAGGGTGTGGGCAGATAG-GGGCTAAATGCTTGGGACGGTCAG--------------CGAGAACCGCGTATCCGCTCCGCCGAGGCAGGGCATGAACCAAAGAGCGACAACAGACTAACTACCAGGGGGAACCACGGGCAGGATGGGCAAGGAAGCAGAGGACACGACACTCT------------------------TACTTTTGGGGCAGGGCCAGGAAAGGCCACCAAGACCGGCTACCGTGACACAACTC---TTTATCTGATTCAGTGGGTGGCTCTGAAAAGAGCCTTTTTAGGAGCTCGCGGGGGTTATATCACAGAGACGCGGGCCGACGCGAG-----------CAGTGGCCTCACTTGCCCTTCGCCTTATGGTGGCTCTCCGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGCGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCACCCACACGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCTTGCTTGCCACGACCGGACATCACGAAAGCGCAAACAGACGAACGGCCACAACCAGGAAAC--GGTACTCCGGCGC------CGACGCCTCACCCTTTTATAGACGCAGACCCGATTGTCCGCCCGACGCTCTCATTGGCTCACACGCGTC-CTGACGCCGTGGCCAATAGGAGCGCGCGGACAGAAGCCTCTCATTTACATAAGACCGGCTCCCTCGCCCCGGCGCCGCCCTGGAACGCGCGAATCACGACGC-GCGTGCTCGGTGGCTTCATTTGCGTGCGGCC---------GTCGTTGCGACACTCCGCGGGTCGCCGGGCG---GCTGGGCTTGCTCGCT--------GTTTCTCCT----GCTCTG-----------GAAGCTGGCAAAGTGTGC-CCTGCATCCAAGAGGGCCT
s HiC_scaffold_1 141492199 2390 - 233722169 ACAGCCCTTCAAGTGCCGCCGTGGTTGGCTCTGAAAAGAGCCTTTGTGTGCGATGGACCGGGCGAGGCGAGGCGCGCGCTTCCTGCTTAGGCGCGCTCCCCGCGGATGCGGCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAGCCCACCAGGTAGGCCTCGCTGGCCTCCTGCAGCGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGACGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTAGCGCCGGATCTCGCGCAGCGCCACGGTGCCCGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGCGCGCTCTTGCGGGCCGCCTTGGTGGCCAGCTGCTTCCGCGGGGCCTTGCCGCCGGTCGACTTGCGGGCGGTCTGCTTCGTTCGGGCCATAGCGTACAGGGACACGAAACTGACGGGGCAGCGGTTAGGACCTTAACGACGCGCAGGACTGGCGCAGCAGCCTTTTATAGGCACAGTCATTTCC-CGATTGGGCGGGAAAAAACAATTGAAAGGCCCGCGCTGGCGGGCCATTGGCTGTGACGCCACCCGCCCCCGAGCCGTTCATTGGCTCGGGCCGCGCC---CAGCCTGGCCGCGTCCCGCCCCGTCCC---CGCCTCGCTCTCCGCTTTCCCCCTCTGCCAGCAGTTTCCGGACCTGGTATGCAGTGGCTGTCTGAGTGCAAGTGGCCTCTGAGCGCTGCTGCTCAAGAGTCAGTCAGTCGGTCCCCCTTGGGACCCTCATCCTTTCTTTCAAAACGGACTGCCGCGAGAGCCCTTTGCCTCGTGCGCTGC----AGTGTGGGTCCGGAGTTGAGACTCAACTTTTCGTCCCCTTCCCCCCAGCCCCTTGCACCTTTCAGGGCACTCTGGCAGCCGGTCACCTCTCG-GCCGCCTGTTCGTAGCCTTTCGATGGGAGCGTGGTCTTGGGGAAGTCACGCTGCGAAAGCCCAGAGGGGCGAGTCAGTGTCCGCCACGGGGGCTACGTCAGGTGTGCAAGAGAGCCCGGCGAAGCTCAGACCGAGACCCTCCACGCTACCGAAACCTGCGCGTTCCACTCCCGTTAGGCGCGGCGGCGACAACAGCGCCCCGCCCGAACTGCACCTCG---CTAGGGCAGCCAAGGCCCGCGG-----GGGCGGGGGGCACTCGGCTCCGCCCCTGGCCTTAGCGTTCATCGCAGAGTGCTACGCGGCCCGCCCGCGAGATGTTTGCG-CGGCCTGAGGTGAGCAACTCCCAAGGTCCACGGCCCGACCCGGGCGAGGTAGGGAGTGAGCCCAAGA-------------AACCGGCAGGGGGACGCGGATGCAAGCGGAGTGCAGAAG--GCGCTCACTGCCCTCCCGTCCCATCCCTGGGCTCGGCGTGTACTGCTGGGAAAAAGGTCGGGAGGA--ACCTGGATCTGTTG-------ACAACTCCTTTTTACTTGAAAGAGTGGGTGGCTCTGAAAAGAGCCTTT----GATTTCACAAGCGCC---CCTCAGGGGCGCGCGTTG-CGCGGGGGGCCTCCGCCCGGAGGCCTCACTTGCCCTTCGCCTTGTGGTGACTCTCCGTCTTCTTCGGGAGCAGCACCGCCTGGATGTTGGGCAGAACGCCGCCCTGGGCGATGGTGACTTTGCCCAGCAGCTTGTTCAGCTCCTCGTCGTTGCGAATAGCCAGCTGCAGGTGGCGAGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCAGCCAGCTCCAGGATCTCGGCCGTCAGGTACTCGAGCACAGCCGCCATGTAGACGGGTGCGCCGGCACCCACCCGCTCGGCGTAGTTGCCCTTGCGCAGTAGGCGGTGCACCCGACCCACCGGGAACTGCAGCCCGGCGCGGGAGGAGCGCGACTTGGCCTTAGCGCGGGCCTTGCCTCCTTGCTTGCCTCGGCCAGACATCACAGCGACCCGCACC-ACAAGCAGCTACCACTCAAACACCGGGAAAACCGTCGCGAACGGTGACGCTTCACCCTTTTATAGCCAGAGCGCGGATTGTCCGCGAAGCACGCTCATTGGTTAAAACCTGGCTTTGGCCTGAGGGCCAATAGGAGAGCTTGGCCAGATTCTACTCATTTACATAATCTCGTCCCCCACGCCTCCGCTCCG-CTGAGAACTCGCGAATCGCAGCGCTGCGCGTCCGAAACCCTCATTTGCATGCGGCCTCTATAAATATCCTGGCGTCGCGGAGTGCCCCGCCGGGCTGGCGCGGCGCTTGTCTACTTGTTAGGGGTTATCCCTGGTGGCTCTTGGCGCCATGCCGGAGCCGGCCAAGTCCGCTCCGGCTCCCAAGAAGGGCT

a score=23039
s chr3            96239853 394 + 160039680 GGCCTCACTTGCCCTTCGCCTTATGGTGGCTCTCCGTCTTCTTGGGCAGCAGCACGGCCTGGATGTTGGGCAGGACGCCGCCCTGCGCGATCGTCACTTTGCCCAGCAGCTTGTTGAGCTCCTCGTCGTTGCGGATGGCCAGCTGCAGGTGGCGCGGGATGATGCGCGTCTTCTTGTTGTCGCGGGCCGCGTTGCCCGCCAGCTCCAGGATCTCGGCCGTTAGGTACTCCAGCACCGCCGCCATGTATACCGGCGCGCCGGCACCCACACGCTCCGCGTAGTTGCCCTTGCGCAGCAGCCGGTGCACACGCCCCACCGGGAACTGTAGCCCGGCCCGGGAAGACCGCGACTTGGCCTTGGCGCGGGCCTTGCCTCCTTGCTTGCCACGACCGGA
s HiC_scaffold_1 141473219 379 - 233722169 ggttttatttgcttttggctttgcaa-----ctttgttttctttggtaaCAGAACAGCCTGGATGTTGGGCAGAACGCCGCCCTGGGCGATGGTGACTTTGCCCAAAAGCTCATTCAGCTC---ATTATTGCGGATAGTCAGCTGCAAGTGGCGAGAGATGATG-------TTTTCTTGTTGCGGCCCGCATTGCCCGCCATCTCCAAGATCTCAGCCGTCAGGTAATAGAGCACCGCAGCCACGTAGACTGGCGCGCCGGCCCCCACCTGCCTGGCGTAGTTACCCCTGCGCAGCGGGCAGCGCACCCGACCCACCGGGAACTGCAGCCCGGCGCGCGAGGAGCACGACTTGGCCTTGGCGCGGGCCTTGCCTCCTTGCTTACCACGGCCAGA

a score=80336
s chr3            96245271 2103 + 160039680 GAGAAACAGCGAGCAGGCCCAGC----CGCCCGGCGACCCGCGGAGTGTCGCAACGACGGCCGCACGCAAATGAAGCCACCGAGCACGC-GCGTCGTGATTCGCGCGTTCCAGGGCGGCGCCGGGGCGAGGGAGCCGGTCTTATGTAAATGAGAGGCTTCTGTCCGCGCGCTCCTATTGGCCACGGCGTCAG-GACGCGTGTGAGCCAATGAGAGCGTCGGGCGGACAATCGGGTCTGCGTCTATAAAAGAGTGAGGCGTCG------GCGCCGGAGTACC--GTTTCCTGGTTGTGGCCGTTCGTCTGTTTGCGCTTTCGTGATGTCCGGTCGTGGCAAGCAAGGAGGCAAGGCCCGCGCCAAGGCCAAGTCGCGGTCTTCCCGGGCCGGGCTACAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGTGTGGGTGCCGGCGCGCCGGTATACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCACCTGCAGCTGGCCATCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCAAAGTGACGATCGCGCAGGGCGGCGTCCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAGACGGAGAGCCACCATAAGGCGAAGGGCAAGTGAGGCCACTG-----------CTCGCGTCGGCCCGCGTCTCTGTGATATAACCCCCGCGAGCTCCTAAAAAGGCTCTTTTCAGAGCCACCCACTGAATCAGATAAA---GAGTTGTGTCACGGTAGCCGGTCTTGGTGGCCTTTCCTGGCCCTGCCCCAAAAGTA------------------------AGAGTGTCGTGTCCTCTGCTTCCTTGCCCATCCTGCCCGTGGTTCCCCCTGGTAGTTTGTTGTCGCTCTTTGGTTCATGCCCTGCCTCGGCGGAGCGGATACGCGGTTCTCG--------------CTGACCGTCCCAAGCATTTAGC-----------------CCCTATC------------------------------TGCCCACACCCT-------------TGTCCTA-----------------CACAACACTGTCCCTCACTCAGCGTCCACC---------------------------------------------------CGCCTGACCCTT-------------------CCCAGGACTAAGACTCAACTAGGACGTCTAGGCCAATCTAGACATAAGTCGCAGTCAGCCGCGCTCTCGTCCGGTCCTTGGGGAATGTCTAGGAGGAGGAGGTGTCCCGCGAGGACTGGACGCGGCCGGCTCTAGGGATCATGGgggactggggctgggactgtggctgtggctgggCGGTGCTGCACAAACACTAGA---TTAGTTCTGCCCTGGGACTTTgggcggcgggcgggg----------gcgcgcgAGCTCCTCTTGG---------------------GCAGAGCCGG--GACCCGCCCTCTACGGGCAGCTGCCAGACGTGGCT-----------------------CCACCCTCGCAGAACGTTGGCAAGTGGACCGggcgcggggctggacgtggggggcgggggggggcg-ggtcaggtggcgtggcg-ggcccgagccaatgggcgaggtcggggccggTGACGCCACGGCCAATGGCGCGGCAGCGCGGGAGTTTCAAGTCGCTGTCTCCGCCCCGCCGCGGGGAAGACTGCGCCTATAAAGGCG------GCCGGCTCGGGCCGGTATCAGGTCCCCGAGTGCT-CCTCGTTTGGGTGTCTTCCGTCTTCGCCATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAA-----------GCGCCCTGTCT---CCCATCCATTCCCCACAAAGGCTCTTTTCAGAGCC-ACCACAGCTTCCCGGAAAGAGCTATTCAGCTT
s HiC_scaffold_1 141506487 2316 - 233722169 GACAAGCGCCGCGCCAGCCCGGCGGGGCACTCCGCGACGCCAGGATATTTATAGAG---GCCGCATGCAAATGAGGGTTTCGGACGCGCAGCGCTGCGATTCGCGAGTTCTCAG-CGGAGCGGAGGCGTGGGGGACGAGATTATGTAAATGAGTAGAATCTGGCCAAGCTCTCCTATTGGCCCTCAGGCCAAAGCCAGGTTTTAACCAATGAGCGTGCTTCGCGGACAATCCGCGCTCTGGCTATAAAAGGGTGAAGCGTCACCGTTCGCGACGGTTTTCCCGGTGTTTGAGTGGTAGCTGCTTGT-GGTGCGGGTCGCTGTGATGTCTGGCCGAGGCAAGCAAGGAGGCAAGGCCCGCGCTAAGGCCAAGTCGCGCTCCTCCCGCGCCGGGCTGCAGTTCCCGGTGGGTCGGGTGCACCGCCTACTGCGCAAGGGCAACTACGCCGAGCGGGTGGGTGCCGGCGCACCCGTCTACATGGCGGCTGTGCTCGAGTACCTGACGGCCGAGATCCTGGAGCTGGCTGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCTCGCCACCTGCAGCTGGCTATTCGCAACGACGAGGAGCTGAACAAGCTGCTGGGCAAAGTCACCATCGCCCAGGGCGGCGTTCTGCCCAACATCCAGGCGGTGCTGCTCCCGAAGAAGACGGAGAGTCACCACAAGGCGAAGGGCAAGTGAGGCCTCCGGGCGGAGGCCCCCCGCG-CAACGCGCGCCCCTGAGG---GGCGCTTGTGAAATC----AAAGGCTCTTTTCAGAGCCACCCACTCTTTCAAGTAAAAAGGAGTTGT-------CAACAGATCCAGGT--TCCTCCCGACCTTTTTCCCAGCAGTACACGCCGAGCCCAGGGATGGGACGGGAGGGCAGTGAGCGC--CTTCTGCACTCCGCTTGCATCCGCGTCCCCCTGCCGGTTT---------CTTGGGCTCACTCCCTACCTCGCCCGGGTCGGGCCGTGGACCTTGGGAGTTGCTCACCTCAGGCCG-CGCAAACATCTCGCGGGCGGGCCGCGTAGCACTCTGCGATGAACGCTAAGGCCAGGGGCGGAGCCGAGTGCCCCCGCCCCCGCGGGCCTTGGCTGCCCTAGCGAGGTGCAGTTCGGGCGGGGCGCTGTTGTCGCCGCCGCGCCTAACGGGAGTGGAACGCGCAGGTTTCGGTAGCGTGGAGGGTCTCGGTCTGAGCTTCGCCGGGCTCTCTTGCACACCTGACGTAGCCCCCGTGGCGGACACT-GACTCGCCCCTCTGGGCTT-TCGCAGCGTGACTTCCCCAAGACCACGCTCCCATC-----------GAAAGGCTACGAACAGGCGG----CCGAGAGG--------TGACCGGCTGCCAGAGT-------------GCCCTGAAAGGTGCAAGGGGCTGGGGGGAAGGGGACGAAAAGTTGAGTCTCAACTCCGGACCCACACT----GCAGCGCACGAGGCAAAGGGCTCTCGCGGCAGTCCGTTTTGAAAGAAAGGATGAGGGTCCCAAGGGGGACCGACTGACTGACTCTTGAGCAGCAGCGCTCAGAGGCCACTTGCACTCAGACAGCCACTGCATACCAGGTCCGGAAACTGCTGGCAGAGGGGGAAAGCGGAGAGCGAGGCG---GGGACGGGGCGGGACGCGGCCAGGCTG---GGCGCGGCCCGAGCCAATGAACGGCTCGGGGGCGGGTGGCGTCACAGCCAATGGCCCGCCAGCGCGGGCCTTTCAATTGTTTTTTCCCGCCCAATCG-GGAAATGACTGTGCCTATAAAAGGCTGCTGCGCCAGTCCTGCGCGTCGTTAAGGTCCTAACCGCTGCCCCGTCAGTTTCGTGTCCCTGTACGCTATGGCCCGAACGAAGCAGACCGCCCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCTTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGCTTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGCGCGCCTAAGCAGGAAGCGCGCGCCTCGCCTCGCCCGGTCCATCGCACACAAAGGCTCTTTTCAGAGCCAACCACGGCGGCACTTGAAGGGCTGTACCGCTT

a score=26723
s chr3            96245576 496 + 160039680 CGTGATGTCCGGTCGTGGCAAGCAAGGAGGCAAGGCCCGCGCCAAGGCCAAGTCGCGGTCTTCCCGGGCCGGGCTACAGTTCCCGGTGGGGCGTGTGCACCGGCTGCTGCGCAAGGGCAACTACGCGGAGCGTGTGGGTGCCGGCGCGCCGGTATACATGGCGGCGGTGCTGGAGTACCTAACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAACAAGAAGACGCGCATCATCCCGCGCCACCTGCAGCTGGCCATCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCAAAGTGACGATCGCGCAGGGCGGCGTCCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAGACGGAGAGCCACCATAAGGCGAAGGGCAAGTGAGGCCACTGCTCGCGTCGGCCCGCGTCTCTGTGATATAACCCCCGCGAGCTCCTAAAAAGGCTCTTTTCAGAGCCACCCACTGAATCAGATAAAGAGTTG
s HiC_scaffold_1 141472690 462 - 233722169 CGTAATGTCGGGACGCGGAAAGCAAGGAGGCAAGGCTCGGGCTAAGGCCAAGTCGCGCTCCTCTCGCGCCGGGCTGCAGTTCCCGGTGGGCCGAGTGCACCGCCTGCTGCGCAAGGGCAACTACGCCGAGCGGGTGGGGGCCGGCGCCCCAGTCTACCTGGCCGCGGTGCTCGAGTACTTGACGGCCGAAATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACAATAAGAAGACGCGCATCATCCCTCGCCACCTGCAGTTAGCGGTGAGAAACGACGAAGAACTGAACAAGTTACTCGGAGGTGTCACCATTGCCCAGGGCGGCGTCTTGCCCAATATCCAGGCTGTCTTGTTGCCCAAGAAAACGGAGAGTCACAAGCCTGGCAAGAACAAATAA---------TTAAATCTGCCCCCCT----------TCACCC--------------AAAGGCTCTTTTAAGAGCCA-CTACAGTGTCAAAGGAAGGGCTG

a score=14089
s chr3            96246873 432 + 160039680 TCCGTCTTCGCCATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAAGCGCCCTGT
s HiC_scaffold_1 141039236 417 - 233722169 TTCCTATCCACCATGGCTCCTACATAGCCAACTGCACTCCAATCCACCAGTGATAAAGCACCCAGGAAACAACTAGTTACAAAAGCTGCTCTTAAGAGCACACCCTCTATTGGAGGGGTGAAGAAACATCACTGTCACAACCCTGAGACTGTGGCTCTCAGTGAAAT-------TAAATAAAGTTCAATGAACTTCTGATTCTCAAACTCCTTTTCCAGCATCTGGTGGGAGAAATC----AGGACTTCAA-ACAGATATGCGCTTCCAGAGCACAGCTGTTGGTGCTTTGCAGGAGACAAATAAGGCTTTTCTGATTAGCCTGGTTGAACATACCAACCTGTGTGCTCTCCATGCCAAATGTGTAACAGTGATGCCAAATTA---CCCGATAGAACACTGCAGAGGTGGAGAACCTGCTTAAGAATCCAGT

a score=37663
s chr3            96246881 483 + 160039680 CGCCATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAAGCGCCCTGTCTCCCATCC-----ATTCCCCACAAAGGCTCTTTTCAGAGCCACCACAGCTTCCCGGAAAGAGC
s HiC_scaffold_1 141524324 475 - 233722169 CGCTATGGCTCGAACGAAGCAGACCGCCCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAAAGCGCGCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCTTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGCTTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGCGGGCCTAAA-----------TCATACACTAAATTCACCTTAAAGGCTCTTTTCAGAGCCACCTACGTTTCC--AAAAGAGC

a score=13960
s chr3           96246884 418 + 160039680 CATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAG-GCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCG-CAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGG--CGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAG--CGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATC---CGTGGGGAGCGCGCTTAAGCGCCC
s HiC_scaffold_1 48906100 417 - 233722169 CATGGCTCATACAAAGCAGACTGGCCACAATGCCACCAGAGGTAAAAGTACCCAAGAAACAACTGGCTACAAAAGCCACTCGGAAAGATTGTGTCCTCTACTGGAGGGATAAAGAAACCTCACTGTTACAAGTCTGGGATGCTGGTACACGTAGAGAAATTAGACTTTATCACAAGTCCATTGAACT----ATTCACAAACCTCCATTCCTGCTTCTGGGGCAAGAAATTACTCATCACTTCAAAACTGATCTGTGCTGCCAGAGCGCAGCTATCAGTGCTTTGCAGGAGGCAAGTCTGAGGCCTATCTGGTGGAACCATT-GAAGGTATCAACCTGGGAGCTATCCCTGCCAAATGTGGAACTGCTATGCCAAAAGATATCCA-----CCCACCACACCATACATGGAGAACATGCTTAGGAGTCC

a score=17159
s chr3           96246885 414 + 160039680 ATGGCCCGTACGAAGCAGACTGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAAGCG
s HiC_scaffold_1 69865420 413 - 233722169 ATAGCTAGAGCCAAGCAGACTGCGTGGAAGTCCGCTGGTGCCCCTCCCCC-CACAAATATCTGACTACTAAAGCTGCTGGCAAAAGCGCTCCCTCTACTGGTGGGGTGAAGACACCTCATTGCTGCATGCCTGGTACCGTGGAACTTAGAGAGATTTGCGGTTACCAGAAATCCACCCAGCTTCTCATTCAGAAGCTACCTTTCTAGAGGTTGGTGAGAGAGATTGCCCAGGATTTCAAAAGTGACTTGAGGTTTCAGAGCGCAGCCACTGGTGCCCTTCAGGAGACTCGTGAAGCATTCCTGGTGGGCTTATCTGAAAATATTAATCTGTGTGTTATCCATGCTAAGAGAGCCACCACTGTACCCACAGACATCCAGTTGTCCCACTGGATTCGGGGAGAGAGAGCTTAAGTG

a score=31676
s chr3            96262911 2369 + 160039680 GTCAGCTCTCCTGAAGAGACTGTGGTTGGCCCTAAAAAGGGCCGTTAGGGATGGGGGGGGGGGGAATTGAAGCGGCGGCGTCTAGCCTCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGAGCGTACACCACATCCATAGCGGTGACGGTCTTGCGCTTGGCGTGCTCGGTGTAGGTGACTGCGTCGCGGATGACGTTCTCCAGGAACACCTTCAGCACACCACGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTGACCCCACCGCGCCGAGCCAGGCGGCGGATGGCGGGCTTGGTGATACCCTGGATGTTGTCACGCAAGACTTTGCGATGGCGCTTGGCGCCACCCTTGCCTAGACCCTTTCCACCCTTTCCTCTGCCAGACAT---------GGCTAATGTAATCTGAAACACCAGCTGGTGAGGCATTGGAGGTGGAGTGCCACTAATATATGAGAGGATCGGACCAGATTGAAAACTGAAAGCGCGCGGGCGGGAACCTTTCTAAATTATCCGGGCTCTGGATGTTGCATCATCTTCCTGTTTTTCTTTTCTCTTC-----TCTGC----------------------CCTCTACCGGTTCCTTACAGTCTCAAGCCTTTATTTTTTTATTTTCGATTTTC-TTAATTATGGTGCCGAAGTCCCTCGGAGAATTCAGATTCCTCCAAATAAAACTTAGAGATAACACAGACTTTA----------------------------GAAAGC-----ACTGACGCTAAAAAGAC------------AAAAGACCGGAGAAAGAGAAAGTTAGAGAT---GAGGGGGGAGTGCG-----CTGCACTGAA----GGGCCCGGAGCTCCT----GTTA--GGTAAAAACCGCAGCAAAAGTTCCAGTAAC-CAGCGTGACAAT-CGAAAGCAGAGGACCCAGGAATGTGTGTGGAAGGGAAAGGTCGCGGGCGTTTCTGCGTACAGTCGCCTGTTTCGTTGATAGAGACACATTATTCAGATCAAGCAGAAACTAGATCATAGGAAAACTG-----AGGATGCCGCC-----------GATCCTTTTCACCGAGGTCAGTGGGTTTCCACGCTCTTCTACCCAAAGGCCCGCTGACTAGCC---------------GAGCAGCCCGGGAATGCTGCTACGCTCGTTTCCACAAGTCCTTTGAGGCCCGCCCTTTGTTTTCAGTTATTCCAAACTGTCTCTACTATGCAGTAGACTAAAATTCACTTTTTCAAGT---------GTGTGTCTGCTTTAT----------------------------------------ACAGTGAC------------------------------------------------GCCCTGGGAAATGAACTGGAGTCTGTACTTCTAGTATGTCCGTCGTTCCCAGGGCCACCCATAGAAGAATCT-TGAGAAAGCATTC-------TGCATCAGAAAGAACGGTAGTGGGTTGGTTGGGACTTGT--TTTTAAAGTGATCTGATAGGCCTTGTTCTGACTGTTCCTTTATTCTAAC--ATCTATATGTGCTCATGAATCCccaccaccaccaccaccaccTTTTTTCTATCCAGATTTTCTGGCTCCAGACATGTAGATAGAT---GTAGGTTTTGAGTCACCTTAGGCTGGGGGCTCA----GACTCCCCTCTCAACTCAAATGTTTTAAACCTAAGACCTGTGAATTGTAGATCTTAGAGGGAAGAGAGCTCCCTCCTACCCCAGTAACCCTGGGCAGTCATACACGTCTCTTGA-TGGATAGATCCTGTTTGTAG-ACATGCCTCCATGCCCAAACTAGCACCCTAGAATTCAGA----GCCTCTCCATCCCGCAGCCGCTGTTTTCTCATTCCCATGGCGACCCCTGGAAGCTGTGTTGCTTCATATCTC-TGTATTGTGCGGAC-TTCTCCACATCCTTGACTATGT-----CCCTAATGGGATGTGATTTCTGTGTCTTCTTTCTTTTTAAGGTGAAGTGCAGTAGAGGCTCAATAGTTGTTTATGGGTGGACAGCTCCTGCCTTTGCCTCTTTCCTTGTAAAATAAAACAACCACGTGCC-AGGCTGACAGGG--------CTTTGGTAC-------CAGGGCCT------GAGGCAGACTCAGAGTCTACCATCTTTTCAGGtgaagggaatcaagaatattctcc------------tacttcggacatgagaatcattttga-gcagaagggttgag----------------aTTTGTTTAAGAGTGGAACCTGC-AAAAGATATCAATATTTTATCCTGTTTGCAGAAAATCCTgagtgggaaagggggtgggaagggagtagggaagggggtgtggacaggggtgggCAACAATAACGTTGTTCTCTTTTCAGGGGTGAGACCTGAGCCCACTCCTGACA-GACGCTGTCTCAGGACTAACCTGTCCCTGTCTATTCTCCTAAGGGTGATTTATTTcccaaagtcatttgactttgccataagtgtcccttcttccgtcatctttcccctactttaggtatgtggaccccaaattctaaccaccctctttgaattactcagtttttgagaattcccatgtttacgctca-atacacatatttaga
s HiC_scaffold_1 141517945 2331 - 233722169 GTCAGCCCTCCTAGTGACTGTGTGGGTAGCCCTAAAAAGGGCCGTTGGGAGTTTGTGAGA-------CAAAGCTG-AGCATTTACCCTCCAAAGCCATAGAGGGTGCGGCCCTGACGCTTAAGCGCGTAGACTACATCCATGGCAGTGACGGTCTTGCGTTTGGCATGCTCAGTGTAGGTGACTGCATCACGAATAACGTTTTCCAAGAACACCTTGAGCACGCCCCGAGTCTCCTCGTAGATAAGACCAGAAATACGCTTGACACCACCGCGGCGAGCCAGGCGCCGGATCGCAGGTTTTGTGATACCCTGGATATTGTCTCGCAGAACCTTTCGATGGCGCTTAGCGCCACCCTTACCTAAACCTTTGCCGCCTTTCCCTCTTCCAGACATCCTCGCCTCAGAAAGCAAAACCTCTGCCCCGACCAAGCGGGGCTTC------------CGGCTAATATACACGGGTATCGGACCAGATTGAGGACAGAAAGAGCGCGGGCGGGAAGCAGCCTGATTGCCCCGCCTTCC---CGCCGCGtcgtatttcttttgtttcttggtctGCTGGCTTCTGCGGCGCTTTGTGattcttgtgtttctcttttcgTTTCTTCT--TCTCCTgtctctcctccttcttttttgtcTCCCAGTAACTGATACGCCGTAGTCTCTGGGAGAATTCAGATCCC----AACACAGCTTCCAGACTTCGTAGTCTTTGTGCTTTTGTTTCTCCGTCTGAGCTCCCTGAAGGCATTAAATTGAGGGTAAAAGGAAAGGTCTTGTGGGAGAAGACTGGAGGAAGAGCAAATGAGAGTTCGCAGAGGGGCAGAACGCCCCTCTCCCCTGAATCTCAGACCAGAGACTTCTCAACGTCACTGCAGAGAACTGCAGCAAAG----CAGTGGCTCCTGGTGTCCATGTGGaagcaggg-----aggag-------ggagggagaagctCGCTGTAATTTCTGAGTCTAGCCAC---TCTTGT----------------------TTAATCAGAAGCCAGATCCTAGGAAAGTTGGTCTCAGAATACTAACAGACTACTAAAAAGTCGCCTCGTGGAGGTCAGTGAATCCCCATGCAC-GCCATTTAAAGTTCTGCTGAGTGTACTCTACAAATGTGTTAGAGAAGGCAGAGTCTGC-----AATCCATGTCTACAGGTCCTCTAAAATTGGTCCCATG--TTCAGCCAGAATTAAGTGCCTAAGCTGAGCACC-------ACTCCCCTCTTGCAAAGGGTTTTGCAggatatctgttttgttttggttctggaGAATCGAACttggccttgtgcttgctaggcagcgGTTGGTGTCGCTGGGCTAAATCCTGCTGAGGAGACACTACCACAAACTGAGTTATGAAAAAAGCATTGAGGATCTTACTGTTAGCATGT---TCATTTCTAGGGCCCTCTGTAGGAGAAGCTATGAAAGAATGCTCTGATTAGTGCAccagaaa------taattattttcctgaaaaatactattttaaag--------gagatcttgtttcatttctctgttgGCACTAGCTACTTTCTATATGCTGAGGAATCCCAGATA-------------------TTTATCCAGGCCTATAGGCTCCAGACATGGAGATCCATTTGGTAGTTTTTCAGTCATTTAAAACTCAAAGCTCAAGaggaa------caaaaatcaaatgtt-----------------------tAGTCTCCCGGGTAAAGGGGACTCATCCCTGCC-------CCCAGCATAGTTGT---CATCTTTTCAGTGAATGGAACCACCAAGCATCACACATCTACATCCTTAAAGCTACACCCTAGAATTCATAGTAGGCCTCTTC-TCGGTCGGCTGCTTCTCTGTC-----------------------CTGTATAAGCTCATCGCTCATTTAAAAAACGAACAGTTTCTGCAT--TTGACTAGTTTTAAACACTAGTAAGA---------------------------AAGACATAACCAAATTGCAACACGATA-------------------------------------------------AAAACAACCACAAGCCAAAGCAGACAGAATTGatattttttggtattgggggaCAGGACCCTCAGTGGAACCAGAGACAGTGTCTTTGCACTTCCCTTTTGAAGGGCGTCATG-ATATTCTAccccaaaataaatcattttgggTATAGGAAACATTTTGATGTAGAGGTATTAGAGTTCCTGAAATTTCTTATCTGCCTAAAATCAGAGACTCCTAAAAGAACTCGACATTTTGACTCAGTTGTTATAAATC----------------------------------------TGT-----------GGCAACAACCCAGTT-TTCTCTTTGTGGAGATGAGA----AACACATACTAAACCTGTCACTGTCACAGGCCTTTCACATC----TCTTTTCTTCTAAGGGctacttatttttctaa------------------aaaagcattttctt--------ttttccctac-tgAGATATATATGGTCCTACTTCTAATCA-CCTGTTTGAATTACTCATCTTTGGGGTGCTC---TATATATGCTTATGaacttatgtctaga

a score=11719
s chr3            96265566 1184 + 160039680 AGTAGGAAGGAGACTTGAACTGATTTCTATCCAGTG--GCAGGATACTGGAGGTACTGGCCCACCTCAAAAAGGAGTAAGAAAAAGGTCCCAAATACCCATGGTTTCTTAGTTTGGTCCTAGGTCGCAGACTATTCAAAATCAAAGCAAACCAGGTAAATAGCCTGAGTAGCCAACAGACCAAAATTCACCTGGTCCAAGTTCGTGTTTGACTCTAACTCTGGGGTTTCTTGAGCCCAAACACAAAACTTAGTCCATGCTTTTGtattaaaaacaaatatataaaatacatatatatttgttt---atataagtacatataaaatattaCATGCCTAATAGTTCATTT----AATTTTTTTTGTTTGCTTTTCACTGTATGGAAAAAGTTGAGCTTCTTGTACCCACCCCCAATTAATAAGATCCCAGTTCTCTGTCTCTAAACTTTAGGCCCTGGCAATGTGGtttgttttctctgaaacagggtctcactctgtagctctggctgtcctggaactcacctggatctacttgcctctgTGCCATTATACCCTGCTTGGCCTTTTTTTTTTTGGGGGGGGGTAATTTTTAATGAAA--AACTTCAGGACATTTCTGAGAA----------------ATAACTGCAGAGAAGCAGTTTCTTCTGTATCATAACCCCTGTTCTGGTCAAAGTTTCGATCCAGAA-TTTCCCATGAATATCACTCTAGTGTCGGGTAGACACCAAGCACAGCTGAGCGACAT---GACTGGGTTGTCG------------ACGAAGGCAA-TGTGCAGCAGAAG-----GAATACAGATTAAATTTGCCTGGGCAG--CGAGGATTATCTTTTTTTGGAAGAGACACTGATAACCTT-----CAAAGTTTACTTCTTGATTT--CTAGTTTCGTGCCATAGAATTCACATCTACAATAGCATCCTCATTTCTGAAGAGTATAAACCTCTTACAGGTATAATTGTAGAAGCTAGACAAGAGGAAGACTCTTG--ACTTTCTTACTGTCT--GTTAAAA----TAAACCCTACAACTCCTGGACTCTGTGTCTGAATAcagccgctttctcttcctcttagaggaagtggtccaagatccccagccaatggctaaatatacagacaatgctgtacattacataaacatatacagcactgt-atgtttcctttagtatatgtgtaaatgtgtatggtaaattttaacttatgaatttggctcaataa
s HiC_scaffold_1 141521770 1051 - 233722169 AGTAGAAAGGAGAATGGTGCTG-TTTTTATCCAGTGATGCAGGATATTGAAGAAGTTAATTTATTTCAGAATTGGGTAAGGAAAGAATCTCAAAATCCTATGACTTTTGAGTTTGGTCCAGGGCTGCAAATCAATGAAGATGAAAGCAAATCATGTAGTAGACCTGGCCAACccacaaatc-agattcaaatggTCTGAGTTTG-AAATACTTACAATCCTGGGAGTACCTGAAGCTAAAAATCCAACACAAGCTATCTTCCTAT------AACATCTATTTTAACTTAAT-TACttttgtatcaaaaataaatacatgt---acatTACTTACCTAACAAttcatgtattaaaattttcttgtttatat-------gATGGAAAATGTGAAGCGTCTTCTG----------------------CCAGTCCTCCCTGCCCCAAGTTT----CCTGCCACTGC----------------------------TCCTGCATAACTAG------TAAAATTCAAA-----------------GTGCAA----ACCTT---------------------------ATAATTTCTCATGAAAGTAACTTAAGACATTTTAGGAGAACTAGTTCCTCTTCCTTACAGCTGCAGGAAAGCGGAGG-TTCTGTACCACAGAACTACTTCTG--TAAGGAGTTGATTGGAAACTTTCATAGGAATATTACTCTAGAGTC------------------------CAACATGGGGATTGAATTGTTATTAAAAGTGATTTCTAAGGCAACTGTGCATCAGAAGCTTTTGTATTCTGACAAGTGTtacttaaaaaaattgaaagtttacCACTCTGG---------TTGATGATCTTATTTGAattgtttaattatttaattgCCTTATTTAATTgccta-agtaaatatttaaactgACATCCCTGTTTTCT--GAGtagattcttctaat-----tttttaaaaaacttaaatcaGAGGAAGACTCTTGGAATTTTCTTATGATTTAAGTTATAAAAGTAAAATCCTATGACT--TAGATTCTCTATTTGAATA---------------TCCCTCAGGGAATATATTCCAAGATGCCTAGTCAATGCCTCAAACTACAAACAACATTG------AAATCCATGTAAACAGTGCTCTGATTTTTACCATAAACCAGGT----ATACTTAtggtaaagtttaatttat-aagttaGCACAGTAA

a score=80630
s chr3            96267906 2312 + 160039680 aaGGAAAAAGAATCAAATAAATAAGTGCT----CATTTGCTTTGAAAGTT-ATTTTGACTTGTCATCTAGATGACAGGTTTAACTATTTAGTAGCTGTTCTCCACTGGAAAGGCGGTATTAATACTTCTAGTCTTATCCTTCT--GTTATATAAACATTTCATCTGCAGGACTTAATTGGCCGTTAGTGTAGAAGGGAGGTGGAAGGAACGC---ACTCTAG-----ACAGAAGGAAAGGCGGGA---GCGCCATA----CATAACGATAGTCAGTGTGCAGTAAATGTAAGACCGGCTTTGGTAGGGTTTCGAAATAGGTAAAACTTAAGTTTGCATTTGGTT---CCTTTCACTATACATCGTTTTGTCATCTTTCGGCCGTGGTACAATGCGTTCAAATCACTGGGCACAAAGCCTGAAGTTAAATAAATGCTAACTGTCAGAGAAGAGCTACAGTATCTGGTGACTCGCTACAAAGTGAATCGCAGAACATGAAAAGGGCAAGTTTGTTTCCA---AAGAAACCTGTTAGAA-----------------------------------------------------------GAGCACACT--------------------------GCGTGAGA-----------------AACACTTTAAACACTGCA------------TTTAGGAAAGTTACATCAACTGAAAAGCACTATCTTTTTAAAACC-CTCTGCGGTTCATAAATACAGGAAGGAAAAGTATCAGGAGAGAAGGAATA------------GTGTAACCATCTTGAAACTCAGCAAATAGGATCGAATTCTACCCAATCAGACTGCAAGTCCAGAAACTCCTGCTTTCTGGGCCCAATCAAGACGAAGATAAGTCTATAAGTATGGCCACTTGGCGTCT-----GCAAGCCGAAGTCGCAAAAATATGGCCCGTACGAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAAGCGCCCTGTTTCCCTTCCATCCCCCACAAAGGCTCTTTTCAGAGCCACCTACGTTGTCGATGAAAGTAGCTGTGTCAGCTTTGCAAAT--TGATTTTCAGTGTTTC--------AAATACG------CCCTCAAGTGTG--------------------------TCAGGCCTA----ACAGTTACCAGTAATCACATTCCTTATC----CCAGGTTTATTCCATTTAGAGCTGG------TCTTGAGCTCACTACTCAAATATGGGCCAGTCCAAAAAAGGAG--------------------TTCTAA----------TTAGGGTCTCAGAACT--------GTGAACCTG-----AAAAATAGCCCC--------------------AAAATTCCA-------------AGCGTGATACC-------TAAGAGCGATAGTTAAC----------TTATTTCAACCTGGTGTTT--------------------------------TAAGGA--TCTGTAAGCGAAGGGAAC-ATAAAGAACAGCTGAGGCAAAACTG---------CCGCTCTCAATA----ACAGGCTAGCATGAAATGGAAGGCTGCGATTGGCTAGAAAGAATTTCCTCTAAGCACCACCAAGG-CTCGCAACCAGAATCGGTTTGAGTAGGCTCCGCCTCCTTGACGCTGACTCTGCTGTAAATCAACCAATAAAAATGGAATACCGTGTGAAACCTCATTTGCATACAAGCTCTATAAGTACCGCATAGCAAGC----CGCGCTGAAACAGTTCG----TAGTTGCCCGGTCTACCTTACGTTGCATCTTTAGACGCGGAGGAAAATGCCGGATCCAGCGAAGTCTGCTCCTGCCCCAAAGAAGGGCTCTAAGAAAGCTGTCACGAAAGTGCAGAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCTGTTTACGTGTACAAGGTCCTGAAGCAAGTGCACCCCGACACGGGCATCTCATCTAAGGCTATGGGAATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATCGCAGGTGAGGCTTCCCGTCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACAGCCGTGCGTCTGCTGCTGCCGGGAGAGTTGGCTAAACACGCTGTGTCGGAAGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTGAAGTGCAGCAGAGACGTGATTGATCGGCTTTACCCAAAAGGCTCTTTTCAGAGCCACTTTAGTTCTCAAAAAAA--GACTGTAAGCACT
s HiC_scaffold_1 141523416 2614 - 233722169 AAGAACACATGAGCAACTCAGTAACTGATGAAACATctgctttgaaaatttatttcaacTTGTCATGGTGGAGAAGGACTTGACTA----GAAACCATTCCTCATTGTAATGGAGAAATTAGTATTTCTGATCTTCGCcttctttgtcttagaagcattTCCTGAGGAGGCCCTAACTGGCCTTTGAT-----AAGATGATGAGAAGGATGCCTCACTGTAggggataaaaagggaaaaggaggacAGAGGCCCTAGTATCAAGTTGGTATTTAGCAGGCAG-----ACAAAACAGGTGTTGTCTAGGTCAAAAGTCAGGTGACAcg-aagttta-atttttttaaaccttcCACTAcatattgttttgttctgcttcagAGATCATGTAATACATTTAA-----------CAGAGCCGGAAGCTAAATAAATG-TAGCCATGGAAGAAGTGTTGCAGTAACAGGTGATTTGAAACAAACTGAACCCTAGTTC-TTAGAAGGGCATgctgtttttcagaaaaaaaacctgttaaaatataaaatatgcaaaacgTTATAaatttctgtattgctttttttttttttggtacctgggatcaaactcatgacctcaagcttaccaggcaagtgcttgagccactgaggtaaatccccagcccctaaaacatcataaattttttttttttttacaaatgtacATTAACTTAAAAGAAAGGTCTTCAAAAAACTACCCTTGGATGGataaattatagaaaaagaagagaggaaatggaaggaataaaagaaaggTTGGCACAATAATCTTCTGCCGCAGTACATAGGATTGAATTCTAGCCAATGAGATCAGAACTTCAGAAATTCCTCCTTTCTAG-CCCAATCAAGACGAGCCTATGTCTATAAATAAGACTGCCCAGAGTGTCTTGGTTAAAACGAGGGCGC-----TATGGCTCGAACGAAGCAGACCGCCCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAAAGCGCGCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCTTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGCTTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGCGGGCCTAAAT------CATACACTAAATTCACCTTAAAGGCTCTTTTCAGAGCCACCTACGTT-TCCAAAAGAGCAGCTGTATCTACTTTTCAGTTCCTTACTGTTAATACTTTGCGTAGAGAAATAAGGGACATAGCAAAAGTGGGTGGTAGGGGATGTGGGTGCTTGGCCTTTAGGCCTATGGCACAGCAAACAA-AAACATGGTCTTGGTTCAGGCCAAGTCAGTCC--TTAAGTGCTGGGTTAAACCTAGAGC-AACGGTTTATCGATTTTTCAGTTCTGTGAGGGAAAATTTTGTACCGCAGACATTTGCTAAACCCTGACATGTAAGGCCCTACGACCAGAGACAAGTGAATCTGTCTTTGAAAATgcctttttgtctttattttgtatttaagaaTTGCATAGTCTTGTTTATAGCTTGATATTCGCCAGGTAATATAGGTAGTGGAAGCCAGAAGAGTGAATCACAGGTGGTGTttatatacaaaaatagaaaCTAGCTTTCTTATACTAAAGAATTTCGTATGTATACCAACCTATGAAAACCGGCGGAAAAAGAACTGGTGAAATCACTGCTCTACGTAATTTACTGGTGGATGTGAAATGGAACATTTTGATTGGCCA-ATATGACTTGTTCTAATGACCACTAAGGAAGCGCAACCAGAATCTATTTACATAAACTCCACC-CTTCTATGACGAGT-TGTT-TAAAT-AACCAGTAAAAACGCAGCACTTTTGGAACCCTCATTTGCATGTAGGCTCTATAAGTATAGCGCAACCGGCGACTTGCGGTG---TAGTCTGCAATCAGTTGTCTGGG----TGTGTGCTGTAGTTGTTTTGGGAGAGAAGAATGCCGGATCCGGCGAAATCTGCTCCGGCCCCTAAGAAGGGGTCGAAAAAGGCTGTAACAAAGGTGCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAAAGCTATTCGGTGTATGTGTACAAGGTGCTGAAGCAGGTCCACCCGGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAGGCGTCGCGCCTGGCACACTACAACAAGCGCTCAACCATCACGTCCCGTGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCAGGCGAGCTGGCCAAGCATGCCGTGTCAGAGGGCACCAAGGCGGTCACGAAGTATACCAGCTCTAAGTAAGGG--AGGCGACAGGTGAATTA------TTACCCCAAAGGCTCTTTTCAGAGCCACTTCAGTTATTGGAGAAAGCGGCTGTAAACACT

a score=17156
s chr3           96268688 419 + 160039680 AAAATATGGCCCGTACGAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAAGCG
s HiC_scaffold_1 69865415 418 - 233722169 AGAAAATAGCTAGAGCCAAGCAGACTGCGTGGAAGTCCGCTGGTGCCCCTCCCCC-CACAAATATCTGACTACTAAAGCTGCTGGCAAAAGCGCTCCCTCTACTGGTGGGGTGAAGACACCTCATTGCTGCATGCCTGGTACCGTGGAACTTAGAGAGATTTGCGGTTACCAGAAATCCACCCAGCTTCTCATTCAGAAGCTACCTTTCTAGAGGTTGGTGAGAGAGATTGCCCAGGATTTCAAAAGTGACTTGAGGTTTCAGAGCGCAGCCACTGGTGCCCTTCAGGAGACTCGTGAAGCATTCCTGGTGGGCTTATCTGAAAATATTAATCTGTGTGTTATCCATGCTAAGAGAGCCACCACTGTACCCACAGACATCCAGTTGTCCCACTGGATTCGGGGAGAGAGAGCTTAAGTG

a score=13798
s chr3           96268691 419 + 160039680 ATATGGCCCGTACGAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAG-GCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCG-CAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGG--CGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAG--CGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATC---CGTGGGGAGCGCGCTTAAGCGCCC
s HiC_scaffold_1 48906099 418 - 233722169 ACATGGCTCATACAAAGCAGACTGGCCACAATGCCACCAGAGGTAAAAGTACCCAAGAAACAACTGGCTACAAAAGCCACTCGGAAAGATTGTGTCCTCTACTGGAGGGATAAAGAAACCTCACTGTTACAAGTCTGGGATGCTGGTACACGTAGAGAAATTAGACTTTATCACAAGTCCATTGAACT----ATTCACAAACCTCCATTCCTGCTTCTGGGGCAAGAAATTACTCATCACTTCAAAACTGATCTGTGCTGCCAGAGCGCAGCTATCAGTGCTTTGCAGGAGGCAAGTCTGAGGCCTATCTGGTGGAACCATT-GAAGGTATCAACCTGGGAGCTATCCCTGCCAAATGTGGAACTGCTATGCCAAAAGATATCCA-----CCCACCACACCATACATGGAGAACATGCTTAGGAGTCC

a score=38844
s chr3            96268692 488 + 160039680 TATGGCCCGTACGAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAA-----------GCGCCCTGTTTCCCT---TCCATCCCCCACAAAGGCTCTTTTCAGAGCCACCTACGTTGTCGATGAAAGTAGCTGTGTC
s HiC_scaffold_1 141508298 501 - 233722169 TATGGCCCGAACGAAGCAGACCGCCCGCAAGTCGACCGGCGGCAAGGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCGGGCACCGTGGCGCTGCGCGAGATCCGGCGCTACCAGAAGTCCACCGAGCTGCTGATCCGCAAGCTGCCTTTCCAGCGTCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGAGGCCAGCGAGGCCTACCTGGTGGGCTTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTGGCTCGCCGCATCCGCGGGGAGCGCGCCTAAGCAGGAAGCGCGCGCCTCGCCTCGCCCGGTCCATCGCACACAAAGGCTCTTTTCAGAGCCAACCACGGCGGCACTTGAAG-GGCTGTACC

a score=13708
s chr3            96268693 437 + 160039680 ATGGCCCGTACGAAGCAGACCGCCCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCTGGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACGGGCGGCGTGAAGAAGCCGCACCGCTACCGGCCCGGCACCGTGGCGCTGCGGGAGATCCGGCGCTACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCTGGTGCGCGAGATCGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTCATGGCGCTGCAGGAGGCGAGCGAGGCCTACCTGGTGGGGCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAACGCGTCACCATCATGCCCAAGGACATCCAGTTGGCCCGCCGCATCCGTGGGGAGCGCGCTTAAGCGCCCTGTTTCCC--------TTCCATCCCCCA
s HiC_scaffold_1 141039248 430 - 233722169 ATGGCTCCTACATAGCCAACTGCACTCCAATCCACCAGTGATAAAGCACCCAGGAAACAACTAGTTACAAAAGCTGCTCTTAAGAGCACACCCTCTATTGGAGGGGTGAAGAAACATCACTGTCACAACCCTGAGACTGTGGCTCTCAGTGAAAT-------TAAATAAAGTTCAATGAACTTCTGATTCTCAAACTCCTTTTCCAGCATCTGGTGGGAGAAATC----AGGACTTCAA-ACAGATATGCGCTTCCAGAGCACAGCTGTTGGTGCTTTGCAGGAGACAAATAAGGCTTTTCTGATTAGCCTGGTTGAACATACCAACCTGTGTGCTCTCCATGCCAAATGTGTAACAGTGATGCCAAATTA---CCCGATAGAACACTGCAGAGGTGGAGAACCTGCTTAAGAATCCAGTATGATGGGAAAAATTTCATCCCCCA

a score=30122
s chr3            96269612 606 + 160039680 TAAATCAACCAATAAAAATGGAATACCGTGTGAAACCTCATTTGCATACAA--GCTCTATAAGTACCGCATAGCAAGCCGCGCTGAAACAGTTCGTAGTTGCCCGGTCTACCTTACGTTGC--ATCTTTA-----GACGCGGAGGAAAATGCCGGATCCAGCGAAGTCTGCTCCTGCCCCAAAGAAGGGCTCTAAGAAAGCTGTCACGAAAGTGCAGAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCTGTTTACGTGTACAAGGTCCTGAAGCAAGTGCACCCCGACACGGGCATCTCATCTAAGGCTATGGGAATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATCGCAGGTGAGGCTTCCCGTCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACAGCCGTGCGTCTGCTGCTGCCGGGAGAGTTGGCTAAACACGCTGTGTCGGAAGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTGAAGTGCAGCAGAGACGTGA-----TTGATCGGCTTTACCCAAAAGGCTCTTTTCAGAGCCACTTTAGTTCTCAAAAAAAGACTGTAAGCACT
s HiC_scaffold_1 141473808 596 - 233722169 TATATAAACCAATGGGAAAGAAAGACCTTTTGAATCCTAATTTGCATAACGCGGTTATAAAAGGGTCA---------------------GGTTCATCCTTTCTCATACTTCTTTCCTTGGCTAAGCTTTGTTGGTGGTGTGTGTTACTATGCCTGAGCCGGCAAAATCCGCTCCGGCTCCCAAGAAGGGGTCAAAGAAAGCTGTCACCAAGGCTCAGAAGAAGGACGGTAAGAAACGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTACGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAGGCGTCGCGCCTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAAGTG-AGTGCCGCTCGTACTTGGCGCTCCCGGTCACCCTTTGC--AAAGGCTCTTTTCAGAGCCACCCATCTCATCCAAAAAGAGCTTTGCTCACT

a score=31008
s chr3            96269638 568 + 160039680 CGTGTGAAACC-TCATTTGCATACAAGCTCTATAAGTACC---GCATAGCAA--------GCCGCGCTGAAACAGTTCGTAGTTGCCCGGTCTACCTTA--CGTTGCATCTTTAGACGCGGAGGAAAATGCCGGATCCAGCGAAGTCTGCTCCTGCCCCAAAGAAGGGCTCTAAGAAAGCTGTCACGAAAGTGCAGAAGAAAGATGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCTGTTTACGTGTACAAGGTCCTGAAGCAAGTGCACCCCGACACGGGCATCTCATCTAAGGCTATGGGAATCATGAATTCCTTCGTGAACGATATCTTCGAGCGCATCGCAGGTGAGGCTTCCCGTCTGGCGCATTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACAGCCGTGCGTCTGCTGCTGCCGGGAGAGTTGGCTAAACACGCTGTGTCGGAAGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTGAAGTGCAGCAGAGACGTGATTGATCGGCTTTACCCA------------AAAGGCTCTTTTCAGAGCCACTTTAGTTCTCAAAAAAAG
s HiC_scaffold_1 141494426 578 - 233722169 CGTCCGAAACCCTCATTTGCATGCGGCCTCTATAAATATCCTGGCGTCGCGGAGTGCCCCGCCGGGCTGGCGCGGCGCTTGTCTACTTGTTAGGGGTTATCCCTGGTGGCTCTTGGCGC-------CATGCCGGAGCCGGCCAAGTCCGCTCCGGCTCCCAAGAAGGGCTCCAAAAAGGCTGTCACCAAAGCCCAGAAGAAGGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTACTCCATCTATGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACGGGCATCTCGTCCAAGGCCATGGGCATCACGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGCGAGGCGTCTCGCCTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAAGGCGGTCACCAAGTACACCAGCTCCAAGTG-AGTGC--------CGTTCGTACTTGGCGCTCCCCGGCCACGCTTTGCAAAGGCTCTTTTCAGAGCCACCCACCTCGTCAAGAGAAG

a score=11860
s chr3            96284155 528 + 160039680 AAGATCCCTTTGGTATAGGTCTCCTTTCAAATG---TCTGATTACCCAGCTT--------GTCTCAGCCGGATCCAGTCTGTATATTTGCTTTATTTAAGAGTTGCATGCCATGGT-CCCACAGTTTCAGG---------------GTCAACTTTGGGAAGTTTGTGCCCCAGTACTGTCACTGGGAGGAAGGGGTTCAGGCTGCTCGGGTCCACAGTCACCCACTGAG------CTTCGAGGTCCATCGGGCGCTTCTTTTGGTGTGGTCTGGCTCGCAGTGGCTGTTACTTCTTCATACACGCCATCGCTTCT---------------AACTTGCTGAAAGGAATTTGCTTTCTTTCCCTGCTCAGAAACCAAAGGGACTTCTAAGTTGTATTTCTTCTCTCTCTGCAGCC---TGTGTATTTTCACATAGAGAACCGTGTTCAACGAAAACATTATTCCCACTGACAGATAAAACAGGATGTGAAACCAGACAGGAGCTGATGACTGGGGACCTGAAACAGAGAAA----------AAATCCTTTAGACATCGGAGAGACCCAGCCAAGTTACATTTGGAAGAAAA
s HiC_scaffold_1 105011724 545 - 233722169 AAGATTTCTTTAGAGTAGATCTCGTTTTAAATTATCTTTGATTACCAAATTTCTACATTTGTCTCAACTGAA------------GTTAGCTTTATTTAAGAGT-ATAAGCTATGGAACCCACACTTATAAGCTTTGGAAAgtgacatttaattttcagatatttatgtCTAAGCGCTACCACAGTCACTAAA------------------TCTATGGCCACCCTCTGAGAAAATGCTTGTCTCCCTGCCAGGG-----TTTCCATGTGTCCTTTATCACTGTAGGTCTTGACCCTT---ATACTTCACTTCTTCTTGTAAATGTCTTTGGGATTTTCCGAAG-----TTACTTCCTCTCCATGATCAGAAGCTGAAGCGACTTCTAAATTCTACTTTCTCTCGCTTGgcagttctttacatattctcaCACAGAGAATAGTATCTCCCAAAAACATTATGCCCAATGGCATATAGAAAAGGATGTGAAGCCAGACAAAAATTTGTGTCTGGAGgtctgaaacagaaaaacagagaagagacaCTATTTAGACATCAGAGGAATCTGGCTGAGTTCTGTCTGGAATGAGA

a score=13653
s chr3            96284157 526 + 160039680 GATCCCTTTGGTATAGGTCTCCTTTCAAATG---TCTGATTACCCAGCTT--------GTCTCAGCCGGATCCAGTCTGTATATTTGCTTTATTTAAGAGTTGCATGCCATGGT-CCCACAGTTTCAGG---------------GTCAACTTTGGGAAGTTTGTGCCCCAGTACTGTCACTGGGAGGAAGGGGTTCAGGCTGCTC--GGGTCCACAGTCACCCACTGAGC------TTCGAGGTCCATCGGGCGCTTCTTTTGGTGTGGTCTGGCTCGCAGTGGCTGTTACTTCTTCATACACGCCATCGCTTCT---------------AACTTGCTGAAAGGAATTTGCTTTCTTTCCCTGCTCAGAAACCAAAGGGACTTCTAAGTTGTATTTCTTCTCTCTCTGCAGCC---TGTGTATTTTCACATAGAGAACCGTGTTCAACGAAAACATTATTCCCACTGACAGATAAAACAGGATGTGAAACCAGACAGGAGCTGATGACTGGGGACCTGAAACAGAGAAAAA----------ATCCTTTAGACATCGGAGAGACCCAGCCAAGTTACATTTGGAAGAAAA
s HiC_scaffold_1 141545110 563 - 233722169 gatttctttAGAGTAGGTCTCATCTTAAATTATCTTTCATTACCAAATTTCTACATTTGTCTCAACTGAAGTCAGC-------------TTATTTTAGACTTATAAGCTATGGAACCCACAGTTATAAGCTTTGGAAAgtgacatttaattttcagatatttgtgTCTAAGTGCTACCACagtgaggaagaggcagaggctgTCCCTAAATCTTTGGTCACCCTCTAAGCAAATGCTTGTCTCTCTGCCAGG-GCTTC----AGCGTGTCCTTTCTTGCTGTGGGTCTTGTTCCTG---ATACTTCATCTCTTCTTCTAAATGTCTTTGGGATTTTCCGAAG-----TTACTTCCTCTCCATGATCAGAAGCTGAAGAGATTTCTAAATTCCACTTTCTCTCGCTTGgcagttctttacatattctcaTAAAGAGAATAGTATCTGCCAAAAACATTATGCCCAATGGTATATAGAAAAGGATGTGAAGCCAGACAGAAATTTGTGCCTGGAGgtctgaaacagaaacaaaaagaagagacACTACTTAGACACCGGAAGGATCTGGCTGAGTTCTGTCTGGAATGAGA

a score=12345
s chr3            96284168 515 + 160039680 TATAGGTCTCCTTTCAAATG---TCTGATTACCCAGCTT--------GTCTCAGCCGGATCCAGTCTGTATATTTGCTTTATTTAAGAGTTGCATGCCATGGT-CCCACAGTTTCAGG---------------GTCAACTTTGGGAAGTTTGTGCCCCAGTACTGTCACTGGGAGGAAGGGGTTCAGGCTGCTC--GGGTCCACAGTCACCCACTGAGC---------------TTCGAGGTCCATCGGGCG-CTTCTTTTGGTGTGG-TCTGGCTCGCAGTGGCT-GTTACTTCTTCATACACGCCATCGCTTCTAACTTGCTGAAAGGAATTTGCTTTCTTTCCCTGCTCAGAAACCAAAGGGACTTCTAAGTTGTATTTCTTCTCTCTCTGCAGCC---TGTGTATTTTCACATAGAGAACCGTGTTCAACGAAAACATTATTCCCACTGACAGATAAAACAGGATGTGAAACCAGACAGGAGCTGATGACTGGGGACCTGAAACAGAGAAAAA-----------ATCCTTTAGACATCGGAGAGACCCAGCCAAGTTACATTTGGAAGAAAA
s HiC_scaffold_1 105738512 544 - 233722169 tagagGTCTGGTCTTAAATTATCTTTCATTACCAAATTTCTACATTTGTCTCAACTGAAGTCAG------------CTTTACTTAAGAGTTATAAGCTATAGAACCCACAGTTATAAGCTTTAGCAAgtgacatttaattttcagatatttatgtCTAAGCACTACCACAGTGAAGAAGAGGCAGGGGCTGTCCCTAAATCTATGGCCACCCTCTGAGCAAACGCTTGTCCCCCTGCCAGGGCTTTCATGTGTCCTTTTTTGCTGTGGGTCTTGTTCCTGATACTTCATCTCTTCTTC-TAAATGTCTTCG----GGATTTTCCGAAG-----TTACTTCTTCGCCATGATCAGAAGCTGAAGAGATTTCTAAAT----------CTCGCTTGgcagttctttacatattctcaaACAGAGAATAGTATCTGCCAAAAACATTATGCCCAATGGCATATGGAGAAGGATGTGAAGCCAGAAAGAAATTTGTGACTGGAGgcctgaaacagaaaaaaaaaagaggagacacTATTTAGACATCAGAGGGATCTGGCTGAGTTCTGTCTGGAATGAGA

a score=44592
s chr3            96285507 1732 + 160039680 agcaatagagatcctaaGACAATCCTAGTGTCTTCTG------TAGTGAGTGGGGG-Tagcaaaggagattaaagagagggatgcaggacaaaatg----aaggaaaccatcaggagggaaaataagataaaggaaaggaataaagaaaggaaaacgtgagagacagggaggaaggagaagaga---gaagaaaTTCAGGGAAGGCTGGAGGGTG---ACTGCAGTTCTGAAGGAGGCGTAGAGTG-----------------------------TTCCTCTTCCAGGCTGGACTA-CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGAC------ACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCTGTCACTGT-----TCTTTTCATGAGACTCCCTCCCCTTTCTCC----------TCAAGAGAATGGGTCTCCCCCATTGCCAGCAGAGAGGC-ATGA----TTTCTAAAAGCCGTGACTGTGGCCTCCAGCAGAGGGGCTTCTCATTGCAAAAGCGAGCTTCGCTGCATGGCTCTATTTATTACGAA--GCCATAG--------------AGCCTCAGGTTAGTAGC-CACCCCAAGTCAGCACTAAGATGCA--CTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTA-CTCAAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTTAGGACGGGAACACCTCGCCAGTGAACAAGAGGATGAGAAAGGTAAGCT------GTGGAGAGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGACGACACA-TGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGATTAAAGAAAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTT----GAGTCCCTGG-CTTTA-GGGCTAAAATAAG-TTGATGAAG-GGACAGTCACTATCCCCTGACTGTGA----------------CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTCTT--GCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGG------TGTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAATCT---GAAGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAA
s HiC_scaffold_1 141546054 1794 - 233722169 AGCAGCAGA-----CAGGAGAAGCTCAGTATATTCTGGTGAGATGGTTGGTGAGGGACAGAGCAGGGGTGCGAATGGAGAAGTGGGCAACAAGGTGGTACAAGAGTGACAGGAAGCGAGAACAGAAaatgaaggaggagaagaaaagagggaaga-atgagatgaagggaaggaaaataaaaggcaggAAGGGAAACAGTGAAGTTTGTGAAGAGCATATTGAAGTTCTGAACCAGTGGTGGAAAGGCCCAACCCCAAGCTTTTCCTAAAAACACTTCCTCCTACTGGCTGGGCCATCAAACCCCTAAACAAGCCTCAGCCTCATGGCAGCAAATGGCCCCTTCTCCTTTGCCAGTCGCTTCCAATCCTCACTCACCACGCACTTGAAGCTCCAACACAGGGCTGCGCTTAAGGACATTTCCATCTTCTGTGGCTGCCTCACACCGGTAGGACCCAGAACCACTTTTTCCAGCAGTTAGAATGTGGTACTCAGAGGATGTATTCCTGCCCCTCAGCGTCTTGTGGCCCATGTGGAAGGAGAAGTAAAGTTGCACGCCAGACTTCTGTGGGAGCAACTTTGTCTCACAGCTCAGCTTGACTAGTTTCCTCTGCTGAAGTGGGGATCCTCTGCCGAAGGATGAGGTTAGCACTGGAGCTGGAAACAGCTCTGAAGAGAAAGTTGATAGGGGACAGAGTTGT--CTCCTTCAGCATCAAGGTCCTTTCACAAGG-TCCTACCTTGTTCCCTAGAAATTGCATCCATAAGCTGAATTTTTCCCGCTTACAAGAGAGAAACTATGGGGGTTTCCTAACAGACATAATTAACACTATCAGC----TTGCTTGCATCCATAGAGGACAATTCCTTTATATGGCCCAATCTTCCCTGAATGACCATGGTATTATATAACTGCACCCTCTTGGTAATGATGTACCCAGAGCAGGCACTAGCTCACATCCTTGTCAGTTCAGTG----ATTCCTTACTTGTGCTCTCTCAAACAATAATCCAAGACAGTAATTTCTTTCCCACAGGAATGAGTT-TTTTTTGGATGGAAAAATGTCACTGGTGACTGTGGGTGCTA-AGAGGAAAGATCATTAAATGGTCAGAGCAAGAGCTACATGTAAACTTGGACAGGGGAAGCTGCTTAGTTTGCAGATGTTTAGAGAGAAATAGGACCAGAAAGGCTGTACTGTCCTTGAGAGACAGATGAAACA--------GCTCTTAATGTCTTTGTGGTTGCCACTTCCATGGAGCATTCATGAAATTCTACTGGGCTATTT------TCTAATAAC------------------TCTTTTAGCTACCTTGAAGGAGTCTCTAATCTTTATAAACTAAAATCAGATTGATAAAATGGATCTTCATTATGTCCTGGCTTTGAGTTTAGCTCCTGTGATTATTGATAGGACTTGGTATA-CTGGAAAGAGCAATGG--------AAGGGACCCA---------------------TTTACTGAAGCAGTTTATCTC-----------------------TTATGAATTGAAATGAGGATT-TAGATGA-TTTATGCTGGTCCTTTGGATCTTTACAACTATAGGTCTGTAACTATTTAGATACAATACTTTTCACCATCACAGGTACTCTTGTCGATGTGAAGTGGACAGGTAATCTTTGCTTGCCTGAGCAGTGATAGACGCCACTGTGATTCATGTTGGCTTTCAGAATAGTGAGTGCAGAATCTTGATAAGAAAACTTAACAGGCTTTCCATTTTGATAGAAAACCACATTGTATACCAATTTATTCTTCCATCCATGACACCTCAAGGTCAAAGGTTCTCCTTCAGTGAGGACtctcttggaaggctgaagcagcagcCAAGCTGAAAA

a score=41580
s chr3            96285547 1705 + 160039680 TGAGTGGG------GGTagcaaaggagattaaagagagggatgcaggacaaaatgaaggaaaccatcaggagggaaaataagataaaggaaaggaataaagaaaggaaaacgtgagagacagggaggaaggagaagagagaa--gaaaTTCAGGG--AAGGCTGGAGGG---TGACTGCAG----TTCTGAAGGAGGCGTAGAGTGTTCCTCTTCCAGGCTGGACTA----CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGAC------ACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCT----GTCACTGTTCTTTTCATGAGA--------CTCCCTCCCCT-------TTCTCCTCAAGAGAATGGGTC--------------TCCCCCATTGCCAGCAGAGAGGCATGA----TTTCTAAAAGCCGTGACTGTGGCCTCCAGC--------------AGAGGGGCTTCTCATTGCA-AAAGCGAGCTTCGCTGCATGGCTCTATTTATTACGAAGCCATAGAGCCTCAGGTTAGTAG----CCACCCCAAGTCAGCACTAAGATGCA--CTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTACTC-----AAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTTAGGACGGGAACACCTCGCCAGTGAACAAGAG----GATGAGAAAGGTAA-GCTGTGGAGAGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGA-CGACACATGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGATTAAAGAAAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTT----GAGTCCCTGGCTTTAG--GGCTAAAAT-AAGTTGATGAAG-GGACAGTCACTATCCCCTGACTGTGA-------------CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTC--TTGCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGG------TGTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAATCTGAAGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAAGTGAGGGCCCACA
s HiC_scaffold_1 105739506 1748 - 233722169 TAAGTGGGCAACAAGGTGGCACAAGAGTGACAGGAAGGGAGAacag---aaaatgaaggaagaaa--agaaggaagaatgagatgaagggaaggaaaataaaaagcagga---gaGAAACAATGACGTCTGTGAAGAGCATATTAAAGTTCTGAACCAATGGTGGAAAGGCCCGACCCCAAGCTTTTCCTAGAAAGAC--------TTCCTCCTTCTGGCTGGGCCATCATCAAACCCCTAAACAAGCCTCAGCTCCATGGCAGCAAATGGCCCCTTCTCCTTTGCCAGTGGCTTCCAATCCTCACTCACCAGGCACTTCAAGCTCCAACACAGGGCTGTGCTTAAGGGCATTTCCATCTTCTGTGGCTGCCTCACACCAGTAGGACCCAGAACCATTTGTTCTAGCAGTTAGATTGTGGTACTCAGAGGATGTATTCCTGGAACTCAGCGTCATGTTGCCCATGTGGAAGGAGAAGTAAAGCTGCACGCCAGAACTCTGTGGGAGCAACTTTGTCTCACAGCTCAGCTTGGCTAGTTTCCTCTGCCGAGGTGGGGATCCTCTGCCGAAGGATGAGGTTAGCACTGGAGCTGGAAACAGCGCTGAAGAGAAAGTTGATAGGGGACAGAGTTGTCTCCTTCAGCATCAAGGTTC-TTTCATAAGAGTCATACCCTCTCCCACCTTGGAAACTTGTCCCCAAGAAATTGCATCCATAAGCTGAATTTTTCCTGCTTACTAGAGAATCACTATGGGGGTTTCCTATCAGACCTAATTAAGGCTACCAGCTTGCTTGCATCCATAGAGAAGAATTCTTTTATATGGCCCAATCTTCCCCGAGTGGCCATG-TTATTATATAAC--TGCACCCTC---TTAGTAATGATCTGCCCAGAGTAGGCACTAGCTCACATCCTTGCCAGTTCACTG----ATTCCTTACTTGTGCTCCTCTCTCAAAACAATAATCCGAGATAATAATTTCATTCCCACAggaatgaatattttttttaatggaaaaatgtcACTGGGGACTGTGGGTGCTAACCGGAAAGATCATGAAATGGTCAGAGCAAGAACTACATGTAAACTTGGACAGGGGAAGGTGCTTAGTTTGCAGATGTTTAGAGAGAAGTAGGATCAGAAAGCTGTAC-TGTCCTAGAGAGAC-------AGATGAAACCAGCTCCTAAGGTCTTGCTGGTTTCAACTTCCATGAGCA-TTCATGAAATTGTACTGGGCTGTTT------TCTAATAAC------------------TCTTCTAGCTACCTTGAAGGAGTCTCTGTTCTttgcaaactaaaataaaattgataaaataggTCTTCATTATGTCCTGACTTTGAGTTTAGCTCCTGTGATTGATAGGACATGGTATA-CTGGAAAGAGCAATGG--------AAGGGACCCATTCACT---------------------GAAGCAGTTTA-----------------------TCTTTTATGAATTGAAATGAGGGTT-TAGATGA-TTTACGCTGGTCCTTTGGATCTTTACAACTATAGCTCTATAACTATTTAGATACACTACCTTTCACCATCACAGGTATTCCTGTCAATGTGAAGGGGGCAGGTGATCTTCCTTTGCCTGAGCAGTGATAGACACCACTGTGATTCACGTTGGCTTTCAGAATAGTGAGTGCAGAATCTCGATAATACTTAACAGGCTTTCCCTTTTGATAGAAAACCACATTGTATACCAGCTTATTCTTCCATCCATGACACCTCGAGGTCAAAGGTTTTCCTTCAGTGAGGACtctcttggaaggctgaagcagcagcCAAGTTGAAAAAACACAGACCACA

a score=42869
s chr3            96285549 1692 + 160039680 AGTGGG------GGTagcaaaggagattaaagagagggatgcaggacaaaatgaaggaaaccatcaggagggaaaataagataaaggaaaggaa--taaagaaaggaaaacgtgagagacagggaggaaggagaagagagaa--gaaaTTCAGGG--AAGGCTGGAGGG---TGACTGCAG----TTCTGAAGGAGGCGTAGAGTGTTCCTCTTCCAGGCTGGACTA----CAAACCCCTGAGTGAGCCTGGGGGTTGGGAGAACA--------CTTCCCTTGT--------------------ACTCACCAAGCACTTGGAGCTCCAACTCAGGGCTGCGCTTAAGGACACTGCTGTCCTCCGTGGCTACCTCACACCAGTAGAATCCAGCATCTTCTCTTTCCGCCCTTGCTATATGGTACTCTGAGGATGTGTTCCTGTACTCCAGGATCTTGCTGCCCACGTAGAAGGAGAAGTGAAGCTGTAAGCCGGGTCTCTGCAGGAGCAAATTCGTCTCACAGTTCAGGGTGACCAGACTCCCCTCCGGGAAGGGAGATGAC------ACGGATGCTCTCAGCACTGGCGTGGTAAACAGCTCTAAAGAGAAAGTTGACAAGGGACAGGGTATTCACTCT----GTCACTGTTCTTTTC----ATGAGACTCCCTCCCCT---------TTCTCCTCAAGAGAATGGGTC-------------TCCCCCATTGCCAGCAGAGAGGCAT-------GATTTCTAAAAGCCGTGACTGTGGCCTCCAGCAGAGGGGCTTCTCATTGCAAAAGCGAGCTTCGCTGCATGGCTCTATTTATTACGAA----------GCCATAGAGCCTCA-------GGTTAGTAGCCACCCCAAGTCAGCACTAAGATGCACTTGCCAGCTAGGTAGGTCATTCATTACTTGTGCTA----CTCAAAAGAGAATCTGGGACAAGAGTTTCCTCCCCACAGAAATAAACTATTTTTAGGACGGGAACACCTCGCCAGTGAACAAGAGGATGAGAAAGGTAAGCTGTGGAG-----AGAACAAAGACCTTGAAT-AACTTGAGCAGAGAAAACTGC----TTTACAGATGCTTAAAGAGAAGTGGGCCCAGAGACGACACA-TGTCCCTGACATATAAACACAAAATATAACTGGTTCCTAATGCCTTTCTGGTTTTTATTTCTATGGAAATTTCATGAGATTTAACTGGATTAAAGAAAAAAACAAACAACAACAACAAAAAACAACAAACTCTTGACTAATTT----GAGTCCCTGGCTTTAG--GGCTAAAATAAG-TTGATGAA--GGGACAGTCACTATCCCCTG--ACTGTGA-CACTGTTGGGCCATTGTAGATCTGCAAAGAGCAATGGGTTGCGACACTAAACCCAGCCAATGGTCATTGAGTGGTCTTTGGGGAGGCTGCTTGCCTCGTCGTAGGACTCAGCTTCCTCCTTTGTAAGTTTAAGTGAGGACCGTGGATGCTTTTGTAGTGGCTCTTCCGGTCCTTACAACTGTAACTC--TTGCTATCTAGACTGGATACCTTTCACCGTGATGGACACTCCTGCAGATGTGTAGCGGT------GTCTTCCCGTGCCTGAGCAGTGGTAGATGCCGCTGTGACTCAGGTTGGTTTTCAGAATGGCGACCTCCGAAT---CTGAAGAAAACTGAAAGGATTTTCCATTTCTATAGAAAACCACATTGTACACCAGTTTATTCTTCCATCCGTGACACCTCAAGGCCAGGGGTTCTCCTTCTGTGAGGACTCTGCGGGAGGCCTGGAGTAGCAGCCAATCTGAAAAGT
s HiC_scaffold_1 105012721 1728 - 233722169 AGTGGGCAACAAGGTGGCACAAGAGTGCCAGGAAGCGAGAGCAG---AaaatgaaggagaagaaaaaaaggaagaatgaggtgaagggaaggaaaataaaggCAGGAA-----GGGAAACAATGACGTCTGTGAAGAGCATATTAAAGTTCTGAACCAATGGTGGAAAGGCCCAACCCCAAGCTTTTCCTAGAAAGAC--------TTCCTCCTTCTGGCTGGGCCATCACCAAACCCCTAAACAAGCCTCAGCTCCATGGCAGCAAATGGCCCCTTCTCCTTTGCCAGTGGCTTCCAGTCCTCACTCACCAGGCACTTGAAGCTCCAACACAGGGCTGCGCTTAAGGACATTTCCATCTTCTGTGGCTGCCTCACACCAGTAGGACCCAGAACCATTTGTTCTAGCAGTTAGAATGTGGTACTCAGAGGATGTATTCCTGGCCCTCAGCGTCATGTTGCCCATGTGGAAGGAGAAGTAAAGCTGCACGCCAGACCTCTGTGGGAGCAACTTTGTCTCACAGCTCAGCTTGACTAGTTTCCTCTGCCGAAGTGGGGATCCTCTACCGAAGGATGAGGTTAGCACTGGAGCTGGAAACAGCTCTGAAGAGAAAGTTGATAGGGGACAGAGTTGTCTCCTTCAGCATCAAGGTTCTTTTACAAGGTCATACCCTCTCCCATCTTGGAAACTTGTCCCCAAGAAATTGCATCCATAAGCTGAATTTTTCCCACT--TACTAGAGAATCACTATGGGGGTTTCCTATCAGACCTAATTAAGGCTACCAGC----TTGCTTGCATCCATAGAGAAGAGTTCTTTTATATGGCCCAATCTTCCCCGAATGGCCATGTTATTATATAACTGCACCCTCTTGGTAATGATCTGCCCAGAGTAGGCACTA--GTTCACATCCTTGACAGTTCAGTGTTTCCTTACTTGTGCTCCTCTCTCAAACAGTAATCCAAGACAGTAATTTCTTTCCCAcaggaatgaatt-tttttttgatgGAAAAATGTCACTGGTGAGTATGGGTGCTGAGAGGAAAGACCGTGAAATGGTCAGAGCAAGAGCTACATGTAAACTTGGACAGGGGAAGGTGCTTAGTTTGCAGATGTTTAGAGAGAAGTAGGACCAGAAAGGCTGTACTGTCCTTGAGAGAC-------AGATGAAACCAGCTCCTAATGTCTTGCTGGTTTCCACTTCCATGAGCA-TTCATGAAGTTCTACTGGGCTATTT------TCTAATAAC------------------TCTTCTAGCTAGCTTGAAGGAGTCTCTGTTCTTTGCAAACTAAAATCAGATTGATAAAATGGGGC-TTCATTATGCCTGGCTCCTGTGATTATTGATAGGACACGGTATA-CTGGAAAGAGCAATGG--------AAGGGACCCACTCACT---------------------GAAGCAGTTTATCTC-----------------------TTATGAATTGAAATGAGGATT-TACATGA-TTTATGCTGGTCCTTTGGGTCTTTTCAACTATAGCTCTATAACTATTTAAATACATTACCTTTCACCATCACAGGTACTCTTGGGGATGTGAATGGGCCAGGTAATCTTCCCTTGGCTGAGCAGTGATAGACACCACTGTTATTCATGTTGGCTTTCAGAATAGTGAATGCAGAATATCCATAAGAAAAGTTAATAGgcttttcattttaatagaaaaCCACATTGGATACCAGCTTATTCTTCCATCCATGACACCTCAAGGTCAAAGGTTCCCCTTCAGTGAGGACtctcttggaaggctgaagcagcagcCAAGCTGAAAAAT

a score=31075
s chr3            96291601 2493 + 160039680 TTTagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctagcctcgaactcagaa--atccgcctgcctctgcctcccaagtgctgggattaaaggggtgcgccaccactgcccggc--------------------------------------------------------------ACAAAAT----------------------------ATTTTTAAAAGAAAGAAAG------------AAACAGTTCCcaaaagactcatcgggtactttgtaaaggttttataaagacatgcaataaacac---------------------actaaaagtggtcaatacacaatcagcaaagaaatataaa-----ttaaaaccacaatgtgatgccagtgtacataatcagaacaacacaactaaaactgcagg---aaagaactgctgtggg------------------------------------tgaagctggggaAGCGGGGGCATAAACTTTGAGCAAAGATAAAAATATCAGAGCCCGGGATTTTTGGGTGACACTGTCACCCAAACTGG-----TCCAGCGGGGGATGCTGCAGGCAAATAGGGCCTTGCTGTGGTGTTCTAGCTGT-CTGACCTGATTTGACTTGGTAG--------GTTCTTAGTGCAGATATGTTCATTCAGATTACAT-CTCACATACACTCTGGGAGGGGGGGAAGGGACTCTAACACACACACAGAGGAAGACTTCGAGCCGCCTCCCCCCACACCCCCACACACACACACATCCATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCATTAAC-----TGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACAAAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAACCCAGGAAGCTAGCCGCCCCGCCTTTC--GGTACCCAGACTGTCCT---GGGAGCTTT-TCTAGGTTGTTTGATTTGGATCCAGATGGTAGG---GTTTGGTTGCCAGTGACAGAAGCACCAGAGTTAATGAAGTGGGTCTC--------AAACG-----ACAGCA-------------AACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAAC----ACTTCCATCCACTTCTCCATTGGAAACTGAGACTCAGGCCCTTGAAGCCTTC---------------CTAGCTCCTGAGGAGAAAAACTTGTCT-GCTTTCTTAT-GAAAGGGACAGATTTGGGGGCACTGAGAATCCAGCCCAATAGGGCTACCTCTGGTTTTCTAAAATTCTGTGCTTTTCTAATCTCACTAGGCcagcgtttctcaacctgtgagttgcaaacccctggggggggggggatgtcaaatgacctctcacaggggtcacctaagaccatcagaatatacagacatttacattataattcataacagtagcaaaattacagttatgaggcagcaaatagcattatggttgggggtcaccacagcatgaggaactgcgtcagtgaggtcctggcgttgggaaggttgagaaccactgTGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGAC----AGGAACCTGAAAAACCA--CTTTTGCCGAAAATCCACTCTAAATACAGAGAGTC------TAACTGAGAAATCCTCCTCTGGCTTGTCTTC-CTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAACCATTTGAAAGCAGGAAAGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAG-ACAGAGATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAG-GTCCCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGG-------------------------------------------------------TTATTCATG---ATGCTCT---------------------------------CTTTATTCTGA-TGGAGGCTCGCAGGCTTAATGCCACCAGAGGCT--CCCTTTCCATCCTTTGGAAAT--TAAGCAAC------AATAAACTATTGGATCGTTGATGAACA---GCCTTTAAACTA--GAGTTCTAGGCT------------------------AACGTGACAAAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAGA-------ATCATGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT
s HiC_scaffold_1 105037638 2526 - 233722169 ttgagacagggtctcgctatgcagttcaggctggccttgacctcactttgtagcccatgctggtctcgaactcacaaggatcctcctgactcaggctcctgattgctgggattacagacatgagccaccac-gcccagctttctttttctatttattaaagTCTCATATGGGCTCTGTGTTTAGAATATTATTAGAATTGTACAGAGTCTGTAAATAACATGTTTATGGCagtattacttttaaaagtaggaaaatgggAACATCTTAAACATTTACTAACAAGCAGAATGGTTAAGTT----AATCATGGTATAGTCATACAGCAAACACTTAAGACTTTCTTTTTACATGACAAAAGATGTAAGATGTACCATATTCTATCAACCATAGAGTTCTTTACAGGTAATAAATGCTAACAGTTTTGCT--TCTGTAGAAGGCAACTTCAGGAGTAGGGTCATAGAATGGTAGAGAGATTTCATTGTTTACCCTTATATACATTTGTCTGAATTATAATTTAACATACCCTggcataaa-tttaaataatgataaaatccTCAT-GTCTGAGTTTTTCTCCAGTTACTCTCTTC---ACTGGGGGCCCACAATGGGGG-----------------GACCTTTGTGTAATGTTTGGAGTATATTGACTTACTTTCACCTTGTAGAGCATTGTGTCTCTATCTCCCATAGAGTTGAGcattgtacacacacatatacacacacgtacacaaacacacaaatcTGCCATCCACACAAAGGAATATTCTGA------TTTCT----------------------AGTCATGCCATATTCACCTCCATGGATTTCCAGTTGTACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCACGTGTATTCACCACTGTCACTGAAACTTGCCGCAGTGATGCTGTGCTTGGCAGTTGAGGTCTGAATGGTTGTTCCATTGAGGAGCCACTGTACGGAGCTGTGCCCAGGCAGCTGGGGTCCCTCACACCACAAAGTTACATTTTCTTCTCGGAAAACATTGACCCACGGAGGCTGCAAGATGATCACTGCCTTTGTGAAGTTTGCTTGggtataaaacagaaataaaagcaag-----aaacaaataaTCAAC--------------ACGTG---GAGTGAAAGGAAGGCTCTGAGTGATTAGTAAAGTTTCAtggaaaacac-aaggaaaaatgcatttttatattaatttgaaaACATAGGCAAATTAGAATTCA---------------CGTCTTTAAGAGCATCTAAGCCCCACTTCAGAAAGCTCTGTTTATGTTATCAAATCTTAATCTGGGTGTTGGGACTATTGGGTTCTTAAGG--AGAAACATT-GGGTTGCTGACATGGTTCTCCCTGTTGGAAAGGTGTAAGCAGCATTTAAGATAGGACAACTGACT-GGGCCAGTTTCCTTGTCCTTGAGGCTGTGTTATCTCTA----------AGGGTAAAACATAGACCCTCAGAGGCTTTTGCATCAGAAAT---GCCTCA---CTTTGAAGATGTCACTATGATGTTTTGGCTGTCTCTGCAGAGAAAAAACCAACGTGGCTCTCCTGCAGAGGGGAACAGTCTAGGGGGTGTTGGAA----AACCCAGCAGAGCTACTTCTGCATTTCT-----------------------------GCAGATGTGACTCATCCCTGTTGTTGT--------------------------------------------------------------ATATACAGA---------------------------------------------------------------------------------------------------------------------------------------------GTTGAGTTGAGCAGTCAGGACTTATTCAGAAAACCTTAGATAacaagaaaacttaaaaacaagGATTCTGTAAAAACCAGACTGTGAATGTGGGAGGCTTTTACATAATTTACAAGTCTTTCTCATGTCTATCCTCTCTCTAAACCCTCTTCTTGAGGTCCATGGCACTCATTCTTTGGGAGTAGAAAGGC---GGTATAAGTGA--AGTTGAGCTGGAGGTCACTCACCCATTTGTCCACCAACTGGAACTGCAAGAGACCAGAGAATAGAAACATCAGT-TTGTCAgtaggaaataatgacaaaaggCAAGTTGGGAATAGAGAATGATGTGGACTCAGAAGGGTACCTTAGGTCTCTTGAGATTCTCTATCCCTCTTTCTCAAAAGCAAGTATCAGCTGAACTGATGGGGGCACTGATTGACTTTTTTCCCTAGTAtttgaggatcaaacccagggactGTCACAGTCCatgcaagtgctctactaccGTAGCTGCCCCCCTACCCACAATTaggctttattttaatttgaaatttgcaGATGTGATACTAACTCTGGATACCACTTTACATTCTTTTATTGTGGtaagcaccaaaataaataaataaataaaaagcctaGATACATTTGTCTCCATGCTCATGATTTCTATtatatcaaaggaaaacaaacaaaaaaaaacccaaacaaaaatcTTAACTCCTCATTGCTCGAGCTTGTATCCTTCTAACCA-CTTCCCTGAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATCTTCCCTCC-AAGCTGGTGAGAGCAGTACAACCTGTAGTGTGAAAG--------AGGTTCTGATGAGGCCCGAGGGCAATGattagaaaagaggaaggaagttgCTTCTTTTGACCACATTCATCATG-------TGTCTTTCCTGGGAAATATGTCCCTAATTTT

a score=28056
s chr3            96292173 1921 + 160039680 TCTAACACACACACAGAGGAAGACTTCGAGCCGCCTCCCCCCACACCCCCACACACACACACATCCATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCATTAAC-----TGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACAAAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAACCC-----------AGGAAGCTAGCCGCCCCGC-----------CTTTCGGTACCCAGACT--------GTCCTGGGA------------GCTTTTCTAGGTTGTTTGATTT-------------GGATCCAGAT--------------------GGTAGG-GTTTGGTTGCCAGTGA-CAGAAGCACCA--------------------------------GAGTTAATGAAGTGGGTCTC---------AA-----------------ACGACAGCAAACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAACACTTCCATCCA----CTTCTCCATTGGAAACTGAGACTCAGGCCCTTGAAGCCT---------TCCTAGCTCCT--------GAGGAGAAAAACTTGTCTGCTTTCTTATGAAAGGGACAGATTTGGGGGCACTGAGAATCCAGCCCAATAGGGCTACCTCTGGTTTTCTAAAATTCTGTGCTTTTCTAATCTCACTAGGCcagcgtttctcaacctgtgagttgcaaacccctggggggggggggatgtcaaatgacctctcacaggggtcacctaagaccatcagaatatacagacatttacattataattcataacagtagcaaaattacagttatgaggcagcaaatagcattatggttgggggtcaccacagcatgaggaactgcgtcagtgaggtcctggcgttgggaaggttgagaaccactgTGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGAC------AGGAACCTGAAAAACCA--CTTTTGCCGAAAATCCACTCTAAATACAGAGAGTC------TAACTGAGAAATCCTCCTCTGGCTTGTCTTC-CTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAACCATTTGAAAGCAGGAAAGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAGAG-ACAGAGATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAG-GTCCCATCGCCTCC-CAGGACCAGCTGAGTCCTC---------TCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT-------------------------------------------------------GATGCTCT---------------------------------CTTTATTCTGA-TGGAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAAAT--TAAGCAACAATAAACTATTGGATCGTTGATGA-----------ACAGCCTTTAAA------CTAGAGT----TCTAGGCTAACG-----------------------TGACAAAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAG-------AATCATGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT
s HiC_scaffold_1 141559454 1917 - 233722169 tcTGGCATCCACACAAAGGAAGACTTTGA------TTTCT----------------------AGTCATGTCATATTCACCTATGTGGATTTCCAGTTGTACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCATGTGTATTCACCACTGTCACTTAAACTTGCcgcactgatgctgtgtctggcAGTTGAGGTCTGAATGGTTCTGCCATTGAGGAGCCACTGTACGAAGCTGTGCCCAGGCAGCTGGGGTCCCTCA-ACCACAAGGCTACATTTTATTCTCGGAACAGATTGACCCATGGAGGCTGCAAGATGATCACTGCCTTTGTGAAGTTTGCTTgggtataaaacaaaaataaaaacaag-aaacaatc-aacaaatg------------------------GAGTGAAAGAAAGGCTCTGAGTGATTAGCAAAGTTTCATGGGAAGCACaaggaaaaaatgcatttttagattaatttgaaaaaataggCAAGTGAGAATTTACATCTTTAAGAGCATGTAAGCCCCACTTCAGAAAGCTTTGTTTATGTTATCAAATCTTAATCTGGGTGTTGGGACTATtggattcttctttttttgtctttttcgttttttaccagtaccaggaatcaaactcacgactgcctgcttgcaaggcaggcgttta--tgccgctgagctaaatccccagcccaactacTGGGTTCTTAAGGAGGAACATTGGGTTGCTGACATGGTTCTCCCTGTTGGTAAGGTATAAGTAGCATTTTAGGATAGGATAATGACTGGAGCCAGTTTCCTTGTCCTTGATGCTGTGTTATCTCTA----------AGGGTAAAACACAGACCCTCAGAGGCTTTTGCATCAGAAAT---GCCTCA---CTTTGAAGTCCTCAGTATGATCCTGGCTCTTTTTGCAGAGAAAAGACCAACTTG---GCTCTCCTGCAGAGGGGACTAATCTAGGGGGTGTTGGAA---AACCCAGCAGAGCTACTTCTGCATTTCT-----------------------------GCAGGTGTGGCTCATCCCTGTTGTTGT--------------------------------------------------------------ATATACAGA---------------------------------------------------------------------------------------------------------------------------------------------GTTGAGTTGAGCAGTCAGGGCTCATTCAGAAAACCTTAGATaacttaagaaaatttaaaaatcaggattCTGTAAAAACCAGACTCTGAATGTGGGAGGCTTTTACATAATTTACAAATCTTTCTCATGTCTATCCTCTCCCTAAACTCTTTTCTTGAGGTCCTGGGACTCATTC-TTTGGGAGTAGAAAAGC---GGTATAAGTGA--AGTTGGGCTGGCGGTCACTCACCCACTTGCCCACCAACTGGAACTGCAAGAGACGAGAGAATACAAACATCAGT-TTGTCAgtaggaaataatgacaaaaggCAAGTTGGGAATAGAGAATGATGTAGACTCAGAAGGAATACCTTAGGTCTCTTGAGATTGTCTATCCCTCTTTCTCAAAAGCAAGTATCAGCAGAACTGTTGGGTATTGATTGACTTTTTTCCTTACTTCTGAAGATCAAACCCAGGCACTGGCACATTtcaagcaagtgctctaccaccatAGCTACACCCCTACCTACAATTaggctttattttaatttgagattTGCAGATGTCATGCTAACTCTGGATTCCCCTTTACATTCTTTTAATGTGGTaagcaccaataaataaataaataaataaataaataaataaataaaaccatcaAAGCCCAGATACAGTTGTCTCCATGCTCATGATTTGTATtatatcaaaggaaaacaaacaaaaatcttaactcctcattgctgaagctTGTATCCTTCTAACCA-CTTCCCTGAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATGTTCCCTCC--AGCTGGTGAGAGCAGTAAAACCTGTAATGTGAAAG--------AGGTCCTGATGAGGCCCCAGGGCAATGattagaaaagaggaaggaagctgCCTCTTTTGACCACATTCATCATG-------TGTCTTTCCTGGGAAATATGTCCCTAATTTT

a score=17851
s chr3            96292173 738 + 160039680 TCTAACACACACACAGAGGAAGACTTCGAGCCGCCTCCCCCCACACCCCCACACACACACACATCCATGCTATGCTTACCATTGTGGATTTGCAACTGCACAGGGTCACTTGGCATTGAGGAACCTATCTGACACCTGTATTCGCCACTGTCCTGAAAACTGGCCTCTGGGATGCTATAACTAGGCGTGGAGATCTGAACGGCTGTTCCGTTGATAAACCATTGTGTGGAACTGTCTCCAGGCAGGTGAGGCCCCTCACACCATAAAGTGACATTTTCCTTCTGGAAAATACTGACCCATGGAGGCTGCAAGGTGATCACAGCCTTGGTGGCAT-TAACTGTAGAAAAGAGAGAAaaacaaacaaacaaacaaacaaacGACGACGACGATGAAAAACCTGAGTGAGTTAAAGGCAGAACCTAAGCCACTGGTGAAGTTTTATTGGGAGCACAAAAGGGCAATGTATTTTCACATTAGTTTTAAAAGATTAGCAAGTGAGAA--------CCCAGGAAGCTAGCCGCCCCGCCTTTCGGTACCCAGACTGTCCTGGGAGCTTT-TCTAGGTTGTTTGATTT--------GGATCCAGATGGTAGGGTTT----------------GGTTGCCAGTGACAGAAGCACCAGAGTTAATGAAGTGG-------GTCTCAAAC--GACAGCAAACCGCCTCAAGCCAGTTTCCCTCCACTCAGCGCTAGACTGCCTCTGGGCTGGGGGCAGGGTAAAAC----ACTTCCATCCACTTCTCCATTGGAAA
s HiC_scaffold_1 105748531 702 - 233722169 TCTGGCATTCACACAAAGGAAGACTTTGA------TTTCT----------------------AGTCATGCCATATTCACCTGCGTGGATTTCCAGTTGTACAGGATCACTTGGTGCTGAGAGCCCTGTCTGGCACGTGTATTCACCACTGTCACTGAAACTTGCTGCAGTGATGCTGTGTCTGGCAATTGAGATCTGAATGGTTGTTCCATTGAGGAGCCACTGTACCGAGCTGTGCCCAGGCAGCTGGGGTCCCTCACATCTCAAGGCTACATTTTCTTCTCGGAACATATTGACATACGGAGGCTGCAAGATGATCACTGCCTTTGTGAAGTCTGCTTgtgtataaaacagaaataaaaacaag-aaacaaataatcAACAA-----GTG------------GAGTGAAAGGAAGGCTCTGAGTGATTAGtaaaatttaatggaaaacac-aaggaaaaatgcATCTTTATATTAATTTGAAAACATAGGCAAATTAGAATTTACATCTTTAAGAGCATGTAAGCCCCAC------------------TTCAGGAAGCTTTGTTTATGCTATCAAATCTTAATATCAGGGTTGAGACTATTGGGTTCTTAAGGAGGAACATTGGGTTGC---TGACATGATTCTCACTGTTGGTAAGGTAGAAGCAGCATTTAAGATAGGACAACTGACTG-----GGCCAGTTTCCTTGTCCTTGATGCTGTGTTATCTCTA----------AGGGTAAAACATAGACCCTCAGAGGCTTTTGCATTAGAAA

a score=14541
s chr3            96293294 824 + 160039680 TGCTAGGCATTGAGTTGAGCAGCCGGGGTTTGCTCAGAAAACTTTGGAC-----AGGAACCTGAAAAACCA--CTTTTGCCGAAAATCC-ACTCTAAATACAGAGAG------TCTAACTGAGAAATCCTCCTC-TGGCTTGTCTTCCTCTGTGCTCTTCCCTCCAGGCTAAGGGAACCAACC--ATTTGAAAGCAGGAAAGTAGAGGGGAGGGTGAGGGGTTAAGAAAGAGGTCACTCACCCACTTCCCCACCGACTGGAACTGCAAGAGACCAGAG---AGACAGAGATTAGTGGTGAAAGAAGATGGTGGTGACAAAGAGCAGGCTGGGAAGAGAGGTC-CCATCGCCTCCCAGGACCAGCTGAGTCC---------TCTCAGTCCCTCTTTCCCAAAGTCAAGCAGCAGCAGAACGGATGGTTATTCAT----------------------------------------------------------------GATGCTCTCTTT-----------ATTCTGATG-GAGGCTCGCAGGCTTAATGCCA--CCAGAGGCTCCCTTTCCATCCTTTGGAAAT--TAAGCAACAATAAACTATTGGATCGTTGATGAACA---------GCCTTTAAACTA--GAGTTCTAGGCTAACGTGACA-----------------AAAAGTATTGACTGGCCGTGGTCAGAAGCCACATCCCCCTAGCAAGCCTCCTTGAGCCCTACTTACCCCAAAGTAGCAGAGTTGTTAGAAGCCACATGTCATCTCCAAAGCTGGTAAG-------AATCATGTAATGTGCAAGACACTGGAAGGTTCTACTCAGGGCTGGGGACCAAGATTAGAAAAGAGGAAGGAAGTTGCCATTTCTGCCTGCTTGCATTATGGTACTGTTCCCTTTTCTGGGAAATACATCCTTAGTTTT---------TTCCCCTCTGTTgacaggtctcct
s HiC_scaffold_1 105752034 947 - 233722169 TGTTGTATATAGAGTTGAGCAGCCAGGAGTCATTCAGAAAAACctcaaataacaagaaaacttaaaaatcaggATTCTGTAAAAAATCAGACTCTGAATGTGGGAGGATTTTACATAATTTACAAGTCTTTCTCATATCTACCCTTTCCCTAAACCCTCTTCTTTAGGTCAATGGTGCTTATTTTCTTTGGGAGTTGAAAGGT---GGTGTAAGTAAAG--TTGGGCTGGAGGTCACTCACCCACTTGCCCACCAACTGGAACTGCAAGAGACCAGAGAATAGAATCAGTTTATTAGTAGGAAA---------TGATAAAAGACAAGTTGGGAATAGAAATCGATGTAGACTCAGAAGGATACCTTAGGTCTCTTGAGATTCTCTATCCTTCTTTCTCAAAAGGAATTATCAGCTGAATTGATGGGCAttgatttacttttttccctAGGGAAAAACCCAGGGACTGGAACATTCAAACAAGTGCTTTACCATTATAGCTGCACCCTACCCACAATTAGGATTTTAATATGAGATTTTCAGATGTGATGCTAACTCTGGATTTCCCTTTACATTCTTTTAATGTagtaaacaccaaaaaaaaaaaaaaacatcaaagcCCAGATGCAGTTGCCTCCATGCTCATGATTTCTATTATAAtatatcaaaggaaaacaaacaaacaaaaatcttaatTCCTCATTGGTGAAGCTTGTCTCCTTCTAACCA-CTTCCCTGAGTTCAACTTACCCCAAAGGAGAAGAGCTGTCAAAAGCCACATCTTCCCTCC-AAGCTGGTGAGAGCAGTAAAACCTGTAGTGTGAAAG--------AGGTTCTGATGAGGCCCCAGGGCAATGactagaaaagagaaaggaagttgCTTCTTTTGACCACATTCATCAT-------TTGTCTTTCCTGGGAAATATGCCCCTAATTTTCAAAgcatgtttttttctgttctcataTTCCCT

a score=5519
s chr3            96385383 442 + 160039680 AGACACATGCTGACCCCATAACTATTCTT--TTCTGCCCATCCCTCGTCCATATCCA----------------TATCGCACTTTT-CTGTAAGTGCATTGAGAAAGTCTCATCTGCAGCTAAAGATTTAAAAATCTTATTCAGAACATTAAAATTCTGGAAAAAAATTTTCCTCCCCACAATTATTGGTTCCAGA------GCTCCAGAGTCTCACTTTCTAGACACATAAACTCAACCCACTCCTG-------CTCACC--TCTACAGACTTCGTTTTTAAAGCTGTGGGCCTCTGGGGAGCTGCCAGTAACTGAGGAGAAGGGGAAA-----CTCGCAGCATTCTAACAGGACGCTTCAGACTTGAG--GGGAACCTCAGAGACTGGGGTGGGACCTTAAATAAGTCATTGAGGTTTTCTATACCTAAATTTCTGCATTTTGAAGCAGGCTAGGAGGGGGGGGTTCTTCATGGGCTGCCCC
s HiC_scaffold_1 105958337 455 - 233722169 AGAGAGATGGTTTCCTCATAACTGTACTCCATTCAGGCCTTCATTTGTACATGTCCAGTTGCCTGCAAATCTTTGTTGCACCTCTGCTTAAAGT---TAGAGGAAAGCTT-TCTGC--CAAAATGCTCAAAAGTC--Agttag-----taacattttaaaaagca------ttcacaACGTGTATTTTCTGCAGAAACTCAGCTCGGCAGCCCCA--------GAACATACACAGATCCCACAGCCAGGGACACCTCACTATCCCCCAGGCTG-GTTTTTAAGGGTACACATCTCTAAGTAGCTGACAGTTCCTAGCAAGAAGAACAAGATCACCTTGTAGTCTTCTCCAGTGAAGCCACAGTTTGGAGTGGGAAACCTCGTGGGCCTCGATGAGCCTTTGGACAAGTCATTGAAGCTTTCTCTGCTTCCATTTACACATTGTACAATGAGCCAGAAGGGGTGATTTCCATATGGGTTGTGCC

a score=5109
s chr3            96470591 172 + 160039680 AGCCGTCGCATGCC-----CATCTTTTCTGTAGATCTGTTCCAGTTGCAGAAGATAACAGCCATTGGGCCCACGGCATTTTTACCAAATGCTGGAAAGATGGGAAGGATGCTTTTCCTACTGCTACACTCTCAG----CAGGAAACATGAAGTTCTTCAGAATAGTA-ACAATTAAAAAAAA
s HiC_scaffold_1 105963385 182 - 233722169 AGCAACCGCGTGCTGAGATCATTTTTACTGCAGATATTCCCCTCTTGTAGAAGTTGGCAGCTCTTGGAGCCATAAGATTTTAAACCAGTACCAGAAAGACAAGGTGGGAAGCTTTTCTTTTGCTGCACTCTCAAATATCAGGAAATTGTAGATTCCTCAGCATACTAGACAAGTCAAAGAAA

a score=172879
s chr3            96524346 5031 + 160039680 [encoded data, 5642 characters]
s HiC_scaffold_1 106032134 5384 - 233722169 [encoded data, 5642 characters]

a score=6522
s chr3            96546362 191 + 160039680 GTCATTGGCT-GAAACCATTGTTGAATTTTTGCTGCAGATGCTTAAAAACGCAGAGATCAATGCTCATCTTACAGG-TTAGCTGTGGATTCT-CAGTCACTGAACATATCCGGGTGA------------------------------------CTCATGATCATATCAACCCATAAAGGAGATCCCCCTGACACTCAGAAGTAACCCTCATTGAAAAGGAACAAACTgta
s HiC_scaffold_1 233280799 229 - 233722169 GTCAATGGCCCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAGAGAGTACTGCTGAACTGAAGGGTTTAGATGTACATTCTGTGGCCATTGAACATACCCAGGTGAACAGAACACCCATGGCAAGTCACCATATTTACAGAGCTCATGGCTGGATTTACCCATACATGAGCTCTGCCTGCCACAGTGAGGGGATCCTTACTGAAAAGG-ACAAATTGTA

a score=8200
s chr3           96546370 182 + 160039680 CTGAAACCATTGTTGAATTTTTGCTGCAGATGCTTAAAAACGCAGAGATCAATGCTCATCTTACAGG-TTAGCTGTGGATTCTC-AGTCACTGAACATATCCGGGTGA------------------------------------CTCATGATCATATCAACCCATAAAGGAGATCCCCCTGACACTCAGAAGTAACCCTCATTGAAAAGGAACAAACTgt
s HiC_scaffold_1 23840539 220 - 233722169 CCAAAAAGAGTGCTGAATTTTTGCTGCACATGCTTAAAAATGCAAAGAGTAATGCTGAACTTCAAGGTTTAGATGTAGATTCTCTGGTCATTGAACATATCCAGGTGAACAAAGCACCCAAGATGTACTGCTGTATTTACAGAGCTCATGGCCAGAATAACCCATACATGAGCTCCCCCTGCCACACTGAGATGATCCTTACTGAAAAGGAATCAATTGT

a score=7840
s chr3            96555060 511 + 160039680 GGCCAGAGGTGAGAGAATAAGGA-----CCTGCAGGCCTGGCTTCACCTCCTGTGAAGGCTGCACTGCC---------AGCTTTGGC-ACCCGGTTGTCTAGAGTAAAACAAACACAGGACAAACATTCCTGGCTTCCTACTGGCGCTGAGACT------------GAACTTGCAAG---------------CCTCTGCTCCCCCTGGGCACAGCTGTCCTTGTC-----CCTGAACCCACAGCCTCTGCCC-----------TGTTTTT---------------GTTTATAAGACTTTTTTTTCTTCC----ATCCAAGAACTGAGATGGGTACGTGCGTACAtgtgcatgtgcgtgtgagtgtgcgtgtgtgtgtgtgtgtgtgAGAGAGAGAGAGAGTGAAGAGGGACAAACTGCTATGAGAAT--------ACCAGGTGAAAGGTTATAAACAATCCACTCCAGGAGGCAGCCAATTCAGAACAAGCCTTGGCTATAGGCCCAGGAAGCAGCTGCCACTGCCAGAGTTAAACAGATTTTTGGC-----------------CTAACGCAGAACAAACAAGTGGTCTGTGCTGAGCGCCGCAAATTAAGAA
s HiC_scaffold_1 106057979 539 - 233722169 GGCTAGaagttaaagaaaagagaaatgccCTGTCTGTCTGGCAGCAGCGCCAGAG------GCACTTCCCTCCCTGAAACCTTTGGCTGTCCTGTCAGCTACAGCAAAGCAAACGAACAACAGTGCTACTTGGTTTTCTGCTGTCGCTGAGATCCACAAGGGTGGGGAAGGCGCAGGTAAACCATGACCTAACTTTTCAGACTCCTGGGCTGAGCTGACTCTGTTGTTTGTTTGGACCC-TACCATCTTCCCATACACTTCAGTGTTTCTACCCTCATGACTGGAGTttacaaattttttctttctacctTGGACTAAAGAACTGAGA-------------------------------------------------------------------AAGAAGAATCAGGGGCAGATGTTTATCAGAATCGTGGCTTATAAGGTGAAAGGTTATAAACAACTCTGTCGAGGAGGCCTCCTTTTCAGCACATGCCTTAGCTACAGGCTTGCTAGGCAGCTGCTCTTGCCAAAATCAAACAGTATTTTGGCATTGAAGACAACTCAGGCATATGTAGAGCAAACAAGCAGTCTTTACTCACCTCTGCAAAATGGGaa

a score=140937
s chr3            96556238 5677 + 160039680 [encoded data, 6835 characters]
s HiC_scaffold_1 106059303 6367 - 233722169 [encoded data, 6835 characters]

a score=8192
s chr3            96564101  896 + 160039680 GTACCTACCTCTCCCCATTGCTGTGAAAACTCTCACCTGAAGTCCTCCCCC-ATTTCTCACCTGTTCAAACATTTAGTAGCCCCTCCCCTTTAATGCTGCGATCAGGAAACTAGGTCAAAGTTGACGGAAAAGTTTTTTATGCAGCTGGGTTTCCAGGGACTTGAGGGTTGGAGCAGGGACAAGAATGAGAAAGAGGGCCAGGCTAAGGGATGGAGAGACCAGGAAGGTCT--------------------------------GCATCTT----------------------------TGTGTACAC----------------------------------AGACTTGTT-------------------------ATGAG--------------AACTG------------------------------------AGTGGCCAGGGAAGGACAG-----ATAACAAC-----ACCCAAGGCCACTCAAGAGATTTGATCCTGCAAGAGGCAGAACATATGCCCCCTCTCCTGGTATcccagccccagccccagcccTACCACATCTAGCACTATCGACAAG-Attttatttcctttccgagactggtctctctctgtcacccaagctggcctggacct-----cactctgcacggggggccccaagctctga-----gcactgggtttataggtgtcactcagcacacctggA------CTAAGGCGTT--------TTCTGTGACAACAGACATTCTGTGTGAACCTTGTG--------CTGT--------GGAGCCATC-------------AAACTGTGA-------------------CTGAAAAATGGCATT-------------------------TTTAGTTCTGTTTAATTAATCTAGACTTATACAGCACTGTGTCACGAGTCATCGCCATATCGTGCCTCGCAGCTAACTCTGAGGAAGGAAGTTGCCGGATCTGCTCCCCAAAAGGAAACCCATCCCTCCTGAGGGCACAGCAGGCTGCCCTCCACTTCCTTTTGCCTTCTCTGCACAA--TCTGTCTCACCCTGGGACATTTCCTGCC--TGAAGGCTCATTTTGTGCCACTTCCC--CGTTGCTGGGCAGCTCTTTCCCCATTTAACACTGGGTCTCATTTTC--CCGTGCTCTTCTCA
s HiC_scaffold_1 106067394 1106 - 233722169 GTCTCTAACTCTCCCTATTGCTATGGTGATTTTCACCTGGACTTCTCCCCTTCTTTATCACCTGTTCAAAAATTTAATGGCTTCT---------------------------AGGTCAAAGCTGATGGGAAAGTTATCT--GCAGCTTGTTTTCCAGGGACTAGAAGGGTGGAGCAAGGACAGAAACAAGCCCAAGGGCAAGAT--AGGGATGGGGAGCCGGTGAAGCTCCTGAGTCTGGTTGTTTGTATTCCCTAGCTACTGGCATCTTATGTAAGAAGGgggaaactgggcatggtggtgcacacctgtaatcttgggatttaggaggctgaaagcagaaggattgttgtttgaggccagcctaggttacacaaTGAGTCAAGGGTAGCTTCAACTACATGGTGTTACATTGCctcaaaagacaacaaaaagaaGGGGGCTGGCAGGAACAGGATCCATAGTAACTCTGTGCCCAAGGCCCCTCTAGA--------------AGGACTGGAGCACATACACCCCCTCCTGATACTCTGATGCC---------CCTA----ATCCAGCACTAATCAGAAGCACTTTCTATGATGATGGAAATATG---CTGTCCACTACAGTAGCCGCTAGTGACATGTGGCCACTGAGTCCTGAAATCTGGCAGCTGTGATTGAtgaactgattttat-----ttatttattggactgggattgaaaccagggctttgCTCCAAATtacatcaccactcctattctatttttattttgagacagagtcctgttAAATAGCGAAACTATCCAGGTTGGGtgagaatttgtgatcctcctgcctcagcctccctgggtgctgggattactggtttGTACCAACATGTCTGACTTGAGTTTAATTGGATTAATTTAGCTTTAATTAGTTTCCCGTGGCTGGCAACTACCATATTGAACAAGACAGCAAAACCTAAGGAAGGAAGTAGCTAGAGCTGTTTCACCAGAGGAAACGCTTCCTCCTTCAGAACACAAAAGGCGGCAC-------CCTTTTGCCTTCTCTACACAGTTTCTGCCTCAACCCAGGATATTTTCAGCTGATACAGGCTTACCCAAACACACTTTCCTGCATAACAACTCAGCTGTTTGCACACTGAG---TGGGTAGCTTTTTAGGCCATTCTCTTCTTA

a score=13164
s chr3            96569497 604 + 160039680 CCCAGGTCAGTTGTTCTTGTCCTGCCCTGACCGTGCCCGGGGCTTGATCCTTCTCTAGTCTTTCTTTAGCCTGTTACATAAAGAGGAAAGAATGAACGAACTCAGTGCACTGCGGTGTTTCTGTGTTCCCGCTGCTTGGTCATCTCCAGGCAACAGCGTGACGGAAGGAGAGAGACAGAGCCATGGGGACAGCATTGTGAATCTCATGTGACCTGCATCTCAGGATGTCAAGTGAGGGC-CATTCTCTCTTTT-TGCGTGATGGAACTGCTGAGCGGACATCTTCGAGTCCACCAAGCGGTCAGTAAGCAGGTTCGTGGAAACGTCTGGTTAGGTGCTTGTCAAGGGTATTTTTAACTTCCTGAACAGATGGAGAGAGGAAGAGTTCCAGGTGCAGGGAGAGGATGGCAAGTGAAG----------GGGCGCCCTTTAAATGGCTCTACAGAAG--TACGAAAACTC----------CTCCCGC----------CGAGATCC----------------------------------------------------------------------------------------------------------------TCCTCCTGCCGCCCAGACTCACAGCTATTGCTT-TGCGTCCCGCTCTTTCTCTCTGCACCCATGGTCTTTCATACTTGCCGCACCTTCTAGA--GCAGAAGCTTAGCTTCTTGTTCC--ACACTCA-AAATTTTCCCTTCCA
s HiC_scaffold_1 106074673 722 - 233722169 CCTATTTCAGCTATTCCTATT-TGTC---ATCGTCCCCTTAGCCTGGCCATTCCCTGTTCTCT-GTGAGCCTGTTATGTAAGGAGGAAAGCATGAACAGACT---------GAGATTTTCCCAACTACCAACTGATTTGCCTTCTTCAGGCAACTGAAGGATGGAGGAGGAGAAG-------ACTTGaacaagattgtgagttccaCATG-CCTGAGTCCTGGGATGTTAAGCAAGGTTTCATTTGGTCTTTTCTGAGTGACAGAGCTGCTGACTAGACCTATCCAAGTCAATCAAATAGTCAGTAAACAAGTTCTTGGAAATATCTGGCTGGGTGCTCAGCATGGATATTTTTAACCTCCTGGAC----------AGGAAGGATTTCAGTTGTTGGAAG-GGAAGATTTTAGAAGCATGAGCCCTGGGCTTCCTTTATATGGTCCTGTGGGAGGCCAGggaagctcagcagcacagcacctgcctggcaagcacaaggtcctgagtttgattcctggttccaaataaataaatgaataaaattgcaGCTTCAAGATACATGGTCCTGTGACTGAAGACCCTTCTCTGTCCATCTCACCTGTCTAATTCTGATTTCCTCCCTCCATCCAAGCGCACAGTTAATCCTTATGTctcctgttctctttctct-ctttcttggtcTTTTACGTCTGCCTCACCTTTCAGCTTGCAGAagctttgctttctgttccagACACTCAGAAATCTTTACctcta

a score=15208
s chr3            96571799 899 + 160039680 AAGATCTCTTGTGTACAGCCGCCTCTCCTGGCCAG---GCCCGCAAACATCCCCTGGGAGGTTTGAGGA-GCCACCAACA-CCCTGGACAGGTG--AGAGTGGTGGCTTGGGCTGGAAAACAAGACTCAAAACAGGATCCAGGCCAAGTAAGGGAGAGGTGAGGGGCCAAGAGCAGCCAGATCCAAGTATGGTCAGGCGCGAAAAAGTTATCTGGGTGCCAGGAGAGAGGACTGGGGGAAGGA--------GCTTTGCGAAGGGCTG------CTTCTCTCTCTCAGAGAAGGAGTGGCTCTCCCACAGAACGCCCATCTTTGCTTACTTCCTTTCACCACCATGGCCTG-----------GCAAAAGCATTCGC-TGGAGGAGGGAGTTTCCTCT-CAAAATGGTTGCCTCCGAGGCCACAGCAG---------GGCAAAGGGAAGAAGAAC------GAGAAGGC-------------TTCTTTCCTGACTAAGGAACTGTGGGAGGCATCTCCATGATAAAAGAAACATCCG-ATTTAGACAGCCTTTTCCTGTTTTTGTTTGGTTGGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttgag---acagggtctct-----tacagctcaggctgacctcaaactcactatgtagcctaagagatcttaagttcctggttgtcccttgccctgcctcaacctcACAGGCTTT--CGTTgctggctgtgg---tagcacaaacatgtaatcctaaccccagcactcaggagccagaaggctctcaaatttgagatcaaattcctgtctcaaagAAA---TCGTAAAGAGa---------gccgggcgtggtggcgcacacctttaaccccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggcctacagagtgagttccaggacagccagggctacacagaga
s HiC_scaffold_1 106076762 896 - 233722169 AAGATCTCTT---TCCGGTCCTTTCCCCAAGCCAGCCTGACCCTGTCCATCTCCTGAGAAGTTTGCAGACATCACTGATAGCTCTGGACAGGTGTTAAAGTGGTGGCTCAGGGTGGAAAGCAGGACCCGAAAGAGGAGCCAGGCCAACTAAGGGAGAGGTGAGGGGCCAAGGGCAG------CCAAGTATGGTCAGACAGG--AAGGTTGTGCAGGTGCCAGGAGAGAGGCATGGGGAAAGGAAATGGCATACTTAGAAAAGGGCTGGTCAGCAtttgctcttt--------------ctctctcacacCATG----TCTCTGTTTACTTCCTCTTACCATTCT-GCTTGAGAAAGATGAAGGAAAATCTTTAGCTTGGATGAAGGAGTTTTCTCTCCAAAATGGCTACATCTTTAGTCATAGCAAAAAGAGTTTGGAGAGGGGAAGTCCAACTAAATTGGGAATACAGATTTAAGGTCTTTCTTATCTGGCAGAGAATAGGTGAAGTCCATTTGGATAGGAAAAGAAGCCCCAGTACTTA-------TTCTCCTATTCTCCT----------------------------------TAAGAATAGGTAAGACAAAGACAGATTTAAGTAAACCACATCTATCCTAGTACTACCCATGCTGACCTGAG---TGTTACAGAGTGTTAGAGA---CAAATTTGTATATGTTCCCTCTCTCTATTGTACATCAAAAGACatagagttg-gggctggggatttagctcagcggcata-----agcgcctgc-cttgcgagcaggcag--ttgtgagttcgatacccagtaccgataaaaaggaaaaagacaaaaaaagacatagagttgccaggtgtggtggcgcatgcctgtaatcccagctcttaggaggctgc-gcaggaagatctctgagttcaaggctagcctgaactgcaaagtga----caGGAGAATGGAGATTGCCTAGGGA

a score=70426
s chr3            96573950 3601 + 160039680 ATTTCTATGTTTGTGATT--------TCCTTGGGGGGAATGTGAGTCTCAGTAGGGGAAAAGTCAATGGAGAAAAGGTCAC-ACTAGCCTGGGTCAGATTACATAACAGAACTATTCCTGTCGAGCTCATTTATCTCCTCA--CCTCTGGCCAGACGTG---TTTAAGGACAGATAGGAAGGACCTGTATCTGCAGCCGCTTCTTTGGTCTGAAATCTCTGTGGTGTCCTTGATGTGACTCCGGACTCGCAGGTCGTAACCTTGAACTCTCGGTTATAAGGTTTTCCTGCTTTCTTACTAGTTGTGGGAGTTGCTGGTCCC-CAGCTACCCTGGCTGCAAAGGTTCTTGGAAA-CAACTGGCGATGTGCCTGAGGTATCTTTAGCTTGCCTG-GCCGAAAATAAGGTGAGAAGATCAAGGAGATCGAATGACAGCTTGGCCAAACGGGCATGTCCCGCCATTTGTAGGACAAAGGTTGGAGTGACCACTGGGGATCAGTTGTGCTGTCTCAAAGACAAAATGTCATACAAATCAAGTCAGATGTGAACTCTGCCCTGCCTGGACTCCTGCTTTTACTGGCAGGTGACCTTGTTGGACCAAGCAAACGTCTGGAGTCCCGGTTCCATTTGTACCTTTACAAGTGAGTCTACACCAACCCTACTGTG-GAGT----AGGGGGTCTCAGGAGACAGCTCATGTATCAGATTCGTGTACCAGACATGAG--ACTGAGGCATGGGGGGGTCATGACACAACATTCC-AAGGGTACAAGACTATGGAGTAAAGACACCAAAGCCCTGGGGTGATATTTTGCCTATCTGAGATGA------CAATTGTTCCCCTTGACTTAGCTTCTTCAtttcttttttctttctttctttcttttttttttttttttttttttttttttttttttttggtttttcaagacagggtttctctgtatagccctggctgtcctggaactcactctgtagacccacttcatgcccagcttctttttcttttatttccaTTGAGACAGTGTCTCCTGTGCCCCAGCTTGGACTCAAATTTTCCATAGAACCAAGGGTTAGAGGCATACGCTTTTATGCTCAGttctgtagtgttagggataaagtctaggactttgtgtatgctgggcaagtgctctgactactgagctacacccccagttcACACCCTGCTTTATTCTCTACCAGCCCACACCCTTCTTTACTTTCAAAGTTCAAACAACCATAAAAGTAAGTTGCAGAAACCAACTACCTTTCCCTTACCAAACCGC-GGTGCCTAATCGCTCCATCCACCTGCCTTCTGGCCTTCAGTTTTCTTTGTTCTCCACTCTCAACCTAAATT---TGCTGCATCCAGATCTCT-ATTTGGTCCTCTCTTAAACCACATGAGTCCTTGCACCTGTTCACCGACTCCCCATTTCACGGGTCCTACCTAAGGAGGTGAGGCCTGGGAGGGTAGGTGTGGAACATGGGTTAGG--------TTTTCCTGCTGTAAAATCTAGTCTG-----------------CAGTCCA--GGCATTGGAGCAATTTAGACAATAAGAACTGTTCCTAATGGGTATTATGTACCTGGGTGGCAAACACTGACTAGGTCT----ATGTAAA--TTAGTAGGCCAGGCCTCAACTGCTGTGCTGCCTGCCTCT---------CCAGG---AAGAGCGGCTTTGACCCTGTCTGCTGGACCC-AGGCTCCAGCCTCTGCCTGTTTGGGAGTGCTTGTGGGAAGTTGGGGAAAGGTCAGTGGACATGGTTTAGCTATTGCCTGGAACCAATTAGGAATTTGGGGAAGCTGCTGTGTCTCGTGTCACTGGCTTTGTCCAACAAGGTCACCTGCCAGGGAAGGCAGGAGTCCAGGCAGGGCAGAGTCCAAGAATGACTTGATATTTATGACACTTT-GTCTTTGAGGTAGCATGACTGATCCCAAGTGGTCATTCCAACCTTTGTCCTCCTTTCTCCTGCG---CCAGGGGAAAGGCAACGTGAAGGGACGGAACTGTGGAAAGATGGGTGGGGACTAGTGTCCTGCCCTCCTTTACCACCTTTAGTTCGGGATCTTTGGTCCCACCACCAAGTTCCCAGGGATgtgagttggctcattcggtgcttgcctccaagccttgcatgtgagcccccagacccatatggcagcaggagagtactgactccagcaggctgtcctctgggctccccacacacgccatTTTGTACACCCTTGGCCAAATAAATGAAATGTTaaaaaaaaaaaaaaaaaaaaaaGAGGAGCATCAGGTGGGCTAGCCTGTGGCAGTGTCTCTCAACATAGACCTGGACTTAAGTAATGAGGGTTAGGATGGTGTCTCCCCTCCACTGTGTGTGCACGGGACAACGTAGGAAAAGACAACAGGTAAACAAAACAGAACCAAACCGTTCAGGATCTTT-GTTTTCG-----GCTGTTTCCTCCCTAGCTACAGTCGCTGGCT--GTAGAACTGTGGGAAACCCCAGGGACAAGTCTCCTGGCCCCGC------CCTTCCCTCACCTCGGA-------GAGCTAGAAAAGGAAACACATCAATCACCACAAATTGCTCAATAACTCTGGAATGTTCGCTTCTATTCCTGTTCCCGGCTCTGCTTTCTTGGCTGGGCTTCTATCCCAACACTTGCTACCACATTTAAACGAGGCCTTGAAGGCGCTTCTCCTCCATGGAGTCTAAGCCCCTCTTTGCCCTGTACAATGGGGTCAGAAATACCTGACCTTGGATTTCGGTTCTCTAACCCACGATGCTGTAGGAAATTCGGTCGGCCTGTCTAAAAGCGATTGGGAAGCTTATTGGACGCTTCTCACACAGTCCATCCTTAGACTATGAAATGCTCAGTGGGGCCTCCCGTGGTAGCACGGCAGATGTCTCTGCAGGTCTCCTTACTCTGTTTCTATACTGGACACGCAACTTACTCGTGGCTGTGGCATGGCAAGTGCATGCAACCAATCAGCTCGAGGAAGCCTTCCTTAGAAGCCAATCAGAGGCCAGGGAAGTGACCTCACCCAAGGGAGCGCTGTGTGGGCGAGGAAGCCTCTCTTAGAG--CTGAGTGTCCCTAAATCACTCCCTTCCTCCCCACCCTCCTTACTTCCTGGAAGATAACACCGCCTACCCCCTCCCC----AAAGTGGAGTGAGAAAGGCTAACTTAATTCCACAAAGGAAAGAACAACAAAAAAGAAGGAGC-TGCAAGCCACACCCCGGC---TGTCTGTAGAGAACAGTATATTTAGGGAGATCC-----TAAATATGCCTTTCAAAGTGGGCTCTCCAGGTCCTGGAAGACGGTAAGCTGAAAGCAGTGAGTCACTCCTCTCTCCCGGCCCCTGGCTTTCTGGACTCCCTGCACAAAAATAGCTGCAATCACTCTTTGTAAATAAGGACACCATCAAGGTCAAGTGTGAGAAAGGAGAGGGCTGGTGTCCTGGTAAATGTGCCTGACTATGCAGGCTCATGTCCCTGTGCTGCTGGAGGCCAAAGGC-----------------TAGGGTAGTCTGTGGGCGAGCCTATGCTTTCCCCAGCGCTGCTTTCAGACAGCATTGCAGATGAGTTCCTGAATGTCCTCCAAGGGAGAGCT-----------------------------GAGAAGTAAAGGTCAAGGGTCAAGGCGG-TcacacacacacacacacacacCCGTGTCACACTGGAC
s HiC_scaffold_1 106077986 3069 - 233722169 ATTTCTAGATTTGTGATCCCAAGTAATCTTGGGGGGAAAAGTGGACCTCAATAGGCGAAAGGTCAATGGAGAAGAGGTCACCACTGTCC--AGCCAGATTAC----CCATGCTATTCTTGTCCAGCTTATTTATCTTCTCTGTCCTCCAGCGAGGCACGATATTTGAAGA------GAAGAGACCAAC-----CAGCCCCTTCCTCAGTCAGAAATCTCTGACG----ATCTGTTTGAGTCCTGATTTACAGgtcatgaccttgaactc--agcCCCAgggattttctcctttttcactaGTTAATGGGATTGTTGATCTTATTGCTCTTCTGGCCA-AAGGGTTCTTGGAAAATGACTGGCGAGATGCCTGAGGTATCTTTAGCTTGCCTGAGCTGAAAATAAGGTGGGAAAATCCCACAGATGGAACGA--------------------------------GTTCAGCACAAGCTGGA-------------------------------------------CATA-------------------------------------TCCTGCCTTTGTT-------------------------------CTGGAAACC-------ATTTGGCCTCTGGCAGGTGCATCCACATTAGCCCCACCGTGTGAGCTGGGAAGGGTTACTAGTGGACATTTACTCTAT---ACCCATATATCAGACATGAGGGATAAAGGCATGGAGA---CTTGATACGGCTTTTCTAAGGGCCTAAAACTATGGAATGGCAAATCTAGGACGATGAAAGGGTGCTTTGCCCAGTAGAGATGATGATGACAATCCTTCCCCatgacttaa------------------------------------------ttcttttttattttttgtcttttttg--------agatgggatctcgctgtgcagttcaggctggccttgagctcactttgtag------------cccaggct---ggtcttgaactctcaacga--------tcctcccacctcagcct---cccgagtgct-----------gggattacaggcgtgagccaccacgcctggcttcat---------------------gACTTAATTCTTAATCAGCTGGTGCT-------------TACggcc------------------------------------acttttatttcctttcaaagttcaaacagcaataaaaatgagTCAAGGGAATtaactgtcttttctttctcaaacCACAGGTACCCCTTCAA-CTATCCAGCTGACCTTTGCCTCTC-----TTTTTGGTCTTCACTGCCA-CCTAAACTGCATGTTGCTTCTAAGTCTCCCATTCGGGGCTTCCTTACACCA--TGAGTCCCAATACCTGTTTGCAGACCCCACTCCCAAAGCTGCCTCCTCGAATGGGAGACGA-TAGAAGGCCAGGGGAAGAACATGGGTGGGGAAGGACAGGATTTTTGTCCTAGAACTTATCCTGATTGGGGCCAGGGTGCCCAGACTGTGGGCCTGGGAACAATTTGTTCACCATAAACAGGTCCTGGCAGCCAT-GTAAAACAGGGTTGACAACACTTCGTGGATCTTCTTCTGTAAACGTTTGTTAGCAGTGCCTCAACCCCAAT-CTCTCAACCTCTGGAAGTCCTCCAGAGCCAACAGCAGCCCTCACCC-ATCTACGGAGCCTTAGGTTCTGACTTCAGTGTGCCCCCTGTAGCTCG-GGTAAGTCGGTGAAAGGTTA------ATGGTCTACTTCATGCCTGCGTCAGCTCTGGAATCTGGGAAAGCTGCTGGGTCTCGTGTCTCTGGCTTTGTCCAGAAATGTCACCTGCCAGGAAAGGCAGGCAGCCAGACAGGGCAGAATCCAAGAATGGTTGGATCTTTATgatgtttttgtctttgaggCAGTACAACTGATCCCAAGTGGTCATGCCAACCTCCGTCCtcctttctcttctatttcttggaaAAAAGATATGTACATGGAAGCAGATA---------------GGGTTGTTGTTCTGCTCTTC-------CTTTTTGTTCTGAATTCTT---------------------------------------------------CTCCTGCTCTTCTA----AATTCTCAGACTG--------------------TGACTTTAACA----------------------------TATTT----------------AATCGATCAAGAGTT---------------------------------ggtgaatttgtgtgtgtgtgtgt----------------------------------------------------------gtgtgtgt---------------------------gtaagtaaaATAAAGGGATAATTTTCTGGGTCTTTTACTTTCACTTTTGCTGATTTCCTCCTAGCTA--GTCACGGGTGAGGTATAACTATGGGAAACCTCTATGACAGGTGACCTGGCCCTTCTGCCCACTTTCTCTCACACAAAATACTTCAGCGTTAGAAAAGGAAATACATCAACCATCACAAATTGTTCAATAATCTTGGAATGTTC--TTCTATTCCTCTTCCCTGCTTT---TTCTTGGCTG--CTTTTGTCATAACACTCATCACCACTTTTAAACTAGTCTTTTAAAGTGCTTTCCCTCAATGGAGTAGCAGCTCCACTTCATTCTTTACCATACCATCAGGAACACCTGGCCTTGGATTAACAGTCTTTATCATTTGATACTGTAGGGAATTCAGT-----GGCCTAAATGCAACTGGGAAATTC--TTGAAGGTTCTCCTCTATCCCACCTTCTGATTTTCAAATGCT-----------------GTAGCATCCCAGATATCTATTCATGCTTCCTTATTCAGTTCCTATTCTGGACATGCAGCTTGTCCGTGACTGTTGCATGCTATGTGGCTGGAACCAATCAGCTCATCTGAGTCTTCCTCAGAAGCCAATCAGAGCCTAGGGAAGTGACTTCACTCAA-GGAGAGCTGTGTGGGTGAGAAAGCATCGCTCAGAGCCCTGAATGTCCCTAAGTCACTGGCT------------TCCTTACTTCCTGTAAAGCAACACTGCCGGCCCCTTTCCCCCAGAGAAGGGAATAAGAATGGTTAGCTAAACTGCACAAAGGGAAAAAT--CGAAAGAGAAGCTACATACTGGCCACACACTGGCTTGTGCATGTGGAGCACAGGATATTTAGGGCGCTCCCTCTGCAGACTTACCTTTCAGAGTGGGGTGTACAGGTCTTGGA-----GAAGACTG-----AGTcagcccttcctccctccctgcaccTGGCTTTCTTGACTCTCCCCACAAAAATAGCTGTAATCATTCCGTGTAAATAAGGACACAGTCAAGGGCAAGTGTGGGAAAG--GAAGGCCTGTGCCCTTGTGAACACATGTACACAGAAGTGGTCATGTCACTGTGAC-CTGAGGATCAGAGGCTCAGAAGCCAGCTGGTTTAGGGTGGCATGGGT---------TGTGTTCCACAACTC--ACTCCAAAGGGCCCTGCAGATGCATGCCTGACTATCCCCCA--GCAGGGCTACAGTTTCCCTATGTGCTCACCATGGGGCGGGAGGGGAAGGACAAAGGACAAGAAGGCTCTAACCCTC-----------TCTGTGTCACACTGGAC

a score=7823
s chr3            96578497 93 + 160039680 TTTTTCAGTATATGGCCTCATCCATATTGTCATCGCTGTCCCCTCCAAAGTCCTCTCCATTGTCAAAATATGACATGATGTAATCAGTTTCCT
s HiC_scaffold_1 106081699 93 - 233722169 TTCTTCAGTATATAGCCTCATCCATGTTATCATCACTGTCACCTCCAAAGTCCTCTCCATTGTCAAAATATGACATGATGTAGTCAGTTTCCT

a score=30000
s chr3            96579796 1275 + 160039680 cctcctcatgctcctcttcatcgtattcctcttcctccccctcttccttctcctcctcttcttctttctcttcatcctcctccGAAGTCACTTCCTCCTCCTTCTTCTCTAGCGTCTCATGTGAGGATGAATAGGAAGAGAAACTC-------ACTCACAGAATGCAGGGAGAGCTGGGGCTCCAAGGGACC--------GGGAGGCCAGCTG--------------------TCTATCGCACTTCCTCCTCACCTCTAGTTTCTGTATCGTCTCCTCCTTATCGTCTGTGCTCTTAGGGGGCCTCTTGGGAAGGATAATGGTGGTCCCTGTTTGGAGGATCAAAAAGTGAGAGGCCTTAGTACATCTACTAGCTTTCTTTCGGGGTTTTAAATTTGGGgtgtgtgtgtgtctgtgtgtgtgtgtacgtgtgtgtgtgACACACACGCGGAAGTTAgaatgagttcttccttccaacagtgggtcctgtggattggtggctggcatctcttatcagctgagccatctctccCTCCATCCTAGCTGAGCCTACTCCACCCTCTTGCAGCAAACACGGCACTCTGCTGCCCTCGTGTGGTC---------TCCGGCAGCAA-----------------AAT--GTGGCGGTCTGCTGCCCTCCTGTGGTCCCCGTGGCACCGGCTGACAAGCCCTCATCCTCCTGCAGATCCACTCACGCTCCTTCTGTACTTTCCGCACTCGAATCTTGAGCTCACTGGGGAGTCGCCGCCAATCTGGGAAGAGTGGGAGTGAAAATCAGCAGGACCCTGGCCGGCTGGAGGCTTCTGG-GAGTGATGGCTGGCGCTAAGGGGGAGGGGAGTGTTTAAAAGGAAGGACGGAATGGGGGTTGGTTTGAAGATTTTTCAGAATAAAATTGTAGGTTTGACGCTTCTGGAGAGGTGGGCACTGTTGTTACAAATAGGGTTTCCACGTAGAA--CGCGAGAGTGTTGCAGAGCACATCTAAGACTCTAGATT-TAGATG-----TACAGGAAAGGAAGGTGACAGTTTGAGGTACCTAAAGAA-----TCTGAAAGGAGGGCATTCGGAGAGGAGGGGCCAGTCACTTACCAGGGTTCCAATCGATGGCGTTGTCAATAGGCCCAGACATCTGATACTTGTCTGAGTAACGTTCCACATCTGGGGGGCGGGTGGGGGGGGGGTAGAGCCCGTGAGTTAGAGTTTTA---------ACCTTAGAACA---TCTGTCCTAAGGGTCTGCCCCTCT---TATC-------TATCAATCTCCTTACTCTAAGCCCAGAGCCCAGAGCTGTCAGTTGGGGTCAGC---------CTTGCCTCTCCTTCAGCCTGCCTTGTTGC
s HiC_scaffold_1 106081789 1127 - 233722169 CCTCTTCATGTTCTTCTTCATCatagtcctcctcctcctcctcttctttttcttcttcttcttctttctcctcatcTTCCTCTGAAGTcacttcttcttccttcttctccaagGTCTTAAGCCAagatgaacagaaaaggaaactccAACTCAGCTCACAGAA---AGGGAAAACTGGGGTACACGTGGGCCACGGTGTAGGGAAagcagctgggacccaggagcTCTTTGCATATGCAGCACTTTCTGCTCACCTCTAACTTGTGCATTGTTTCCTCTTTATCTTCTGTGGTCTTAGAAGGCCTCTTGGGAGGTAGAATGGTGGTCCCTGGTTGAGGGATCAAAAAG---------------------------------------------------------------------------------------GTAA------------------------------------------------------------------------ACCGGCAGAGCCTTATTTCCCT---TGCTAG--GTTTCTACTCCACCCTTG---GGCAAACAAGCCACTTTGCTGCCCTCATGTGGCCATCACGGCATCCAGCAACAATTCTAGGACTGAGTAGGAATTAAGGGAAGGCTCTTGAACCACTG-------CAAGACACC--TTTACTTCTCCCCTTTTTCC--CAGATACACTTACGTTCCTTCTGCAGCTTCCGCACTCGAATCTTTAGCTCCCGGGGTAGACGCCGCCAATCTGGGAAGAGTGACAATG--TATCAGAAAGACCTT------CTGG-GCTTTCTGGTGAATAATGACGAAAGGCAAGGTGGAG------GTcttaaaagagggaaagaaaggggcTGGGTC------------------AAGTTG-----CTCATGCCTCTGGAGGAGTCGAGGAGGTT--------TAATATTTTCAAGTGGAATCTGAAAGAATGTT-TAGAGCACATCTAAAGTTCTCATTTGCAGATGCTTCATGGGGGAGAGAACATGGACATTTGGAGGGACATGCATCACACGTTTTGGAAAAAGTGCGGTC--AATGGAAGGACATGTCACTTACCAGGGTTCCAATCAATGGCACTGTCAATTGGCCCTGACAGCTGATATTTGTCTGAGTAACGTTCCACATCTGAGGGAT--------------CAGAGGTCAAGAGTCAAAGTCTTATTCCTCCAGATCCTGGAACAGGGTTGTTCCTGAGGGTCTACCCTTTTCAGTATCAAGGCATTATCTGTCT-CTCACCAGAAAACTAGAGCCCAG-----------GGGGTCAGCATCAGTGAACCTGTTACTCTTCTAACTTGACCTTTTAC

a score=33660
s chr3            96581474 858 + 160039680 TGAGGTTCAATTAAAATCTCGAGTAAGGTGATACATTTCAGACACAGAGGGACATTTAATGCTCTTTCCATTAGACAGGAAACTTCTAAGCCTC-TCTGGCCCTGAGCGTGCTAGCATGGGCACTGCCCACAGAAGGAGGCCCGAATCCTTATGCTAGCTTTCTACTGACCTCTCTTGGGGACGGCTGGCCGGATGAAGTAGGGGAGCTGCCTCATGGCCCCGCGCAGCTCTTGCTTCAGTGCCAGGACATACTCCCCCTCCTCTCCTGCCGGCAGAGGCACTGGGTGGAACTCCAAGGGCTGAGGGGT-----ACAGTGGTTAGTCTGGAGCG-------CTGCAATAAAACCTTAAAAGGCCTTTCCCCCAAGTAAAATCCAGTGTTCTCAGTAAG-----ATTGGGAAGGCCAGAAGATGG-AGGAG-------GGCATTCTGAGAGCTGGAGAGTGGACGGTATGAAGAGTGAAGATAAACACTTCCTTGCCGGGAAAACACCGCCCGTGGGGCAGGTGCGACTATAGACGGAATCAAGGTGCAGATGGCTCGAGATGGGCCAGGAGGATTCTGTGCTCATATG-GCTCAGTGGGGGCTCACATGGGAGGCTTGGGAAGGGAAGGGAGACACTCACAGGAAAGAGTGGAGAGGGCTGGAGAGTGGGTGGGGGCAAAGCATCACCCTTCCCAATGCCCACAGCCTCCATGTTGAAGGTCAACTGGCCCCGGCCACGACCCCGGCCCCCACCCCGGCTGGCCATGGTGGAGGGGGCCT-GGATATGCAGAGATCCAGTGAGAAAAACCTAATAAAGACAAAAACAGAGAGATAAAGAAGTGTACTAGAAGAGATATGACGCCAAGAAGCCGCACAGCACATCAT
s HiC_scaffold_1 106083845 828 - 233722169 TGAGactcaaaataaatcacaaatacTGTTATACATTTCCCATACAGGAGAATTACTATGGCCC-----------CAGTGCATTTCTGTGCTTCATAGGGCCCCAACCGT-----------TACTGAGCACAG---GTGCTCCAAAT----ATGATGGCA----GCTGACCTTTCTTAGGGATAGCTGGTCGGATGAAGTAGGGGAGTTGCCTCATAGCCCCTCGCAGCTCCTGCTTCAGCGCCAGGACATATTCCCCTTCTTCTCCTGAGGGCAGAGGCACTGGGCGGAACTCCAGGGGCTAAGGAGGCGGAAGCAATGGTTAATTCAGGGAGAAAATGACAGAGAACAAACCCAAGAGGGCCTCTCCCCTTGACTTAACCTAATGTTCCCACTGAGCAGAGACCCAAAAGAGCGAAAGGTGGGATGAGATGACCTGGTATTCTGAAAGCTAGGGAGCTGGGAGCGTGAGAGGTAAGGGTAAACACCTTTTTATCCTGGAAATACC-CCTGTGAGttgaa---------------aagaaagagacagcagGGGCAAGATGGG-----AGGAATCTGGGATCACACATGGTCAGTCAGGG-GCACACTGCAGTTTGGGGAAGGACGGAGATATACTCACGGGGAAGAGTGGAGAAGGTTGGAGAGTGGGTGGAGGCAAAGCATCCCCCTTCCCAATGCCCACAGCTTCCATGTTGAAGGTCAGCTGGCCCCGACCACGACCCCGGCCCCCACCCCGGCTGGCCATGGTGGAAGGGGCCTGGGATATTCAGAGATACAGTGAGAAAAACCtgacaatgacaaaaacaaagagaaaaaggag---acaagAAGAATCAGGGAGTCAAATAGACACAAGACACTTCAT

a score=29900
s chr3            96592668 1621 + 160039680 TAAGTTTAAGTTGAATAAATTCAAAGGAAAAAGTG--AAAGAGTGGACCGACCTG--AAAAGAGCTAGTGAGTTCTCTTCCTAAAGATGCTGTTTCAGAGCTAGGGG-TGTAGTTCAGGGGCAGAATGAATGCTTAGCATTTGTAAGACC--GGACTCACATTTCTCAATTTAAAAGAAAAAAGCTTATTTGgggtgcagtggtacaagcctgttatcccagaaagggtgaggcaggagggtcataagttggaggtcagcctgtttgccctgcatagaaagaactggtttcgaaaaTATTTTCCCACATACTAAATAACAATTTATTGAATAGATGTTATCAGAGGgttcattgtgatcccggttgtctagcactgtgtctgctatgtagtaggttctcagtaaatatctgtCTTTTGAA----------CATGTGTCTAC----------------AGACTCTGTGAGTCACAAAGACTCCCTTCTGGTTCTTTTTGTTGTTTTCCTTCTCTGGTCTGAGAATAACTATAAAACATTA---ATGCAATAAACCACCAGTTCAAAGACCCCTAATTATATA--ATGTTGTCTTTTATTGTTCCCTAATTATATCAGGAGTTTAAATTTGTCCTCCTTGACAAGAGCACTGGTTCCCACAAATCAATTCCACTCGATTAACGCTTACTGAACACAATGTATTAAGTACCCCAATCTGTCCCATCAAACCTTCCGTTCATAGAA---TAGAAACAGTGAAAGAGA-----------------------------ACAtataatcctaacaccgggggtactgtggcagggggaat----gcaaactggagg------------------------------ccagtatgggctacatagcaagagtctgccgataaaagcaTGGGAGGGATGGAAAAAGTCAGCCTCGTGAGATGGTAAATACTCGTGTTGCCAAGTGGCCaggaaacaggctgactagctcaagttgtcctctgacctccttgcgtaagccatggcttgtacgtacccccc----ccacacacacacaAATAATGTAATTTTAAAAATTAAAGAGATTCCAATAGTGATAATCGGACTTTGTCAGGTCGGGGATCAATAAATTCTTCACGGTGGTCTAGGAAAGTGGTGGGTAGAGGGTA-GCGGTTCAGTTGACTTGATAGGTAATAAGAATCTGTCAGGCTCTT--GACAGGGGGCTAATGTTACGTTAATGGGTGCGGG---AGAAGCTGGTACCATAGAAGAGTCTGAGC-TACAAGAATGAACCTTCCT---CTCCTGCTTTAATATCTGTCCCCAGGCGCGACAGCAAGCTGTCTCCGGCGTACAGTCAAGACAGCAGTGAGAGCCC-GGGGAAAAAGGGGAGGGATTTAGAAGGGGGCTGATCCAACAGGCTGACAGAAAGCGTTATCTACGTCGCTGTCGGCGCCGAG-GGACTAATTCGGGAAGTACCGAACCAAACCGGGTCAGAGCCACCAGGTCGAAGCCTTACCTGCCGTCCCTCCCCCACTCAGGGCCCACGCAGCCGCCAACTTGAAATTTGCTTTTCTTCTTCCAGC---CCTCGTTCTAGGCCCGCCTCCCCGAGCTCTCCATTGGTGGGTTTTCCTGGCCAATCGACGAG-AGCGGAGGCGGGCG--------------------AGGAGGGGAGGAGGAGGGAGCGAGCTTAACCGGAACTGAGGCTTGGGAAGTGGCGCGCTGAGA
s HiC_scaffold_1 106089331 1548 - 233722169 taaatatttgttggataCTATCTAAAgaacaaatattccaaaatggaATGATCTGCAAAAAGAGATAGTGAGTTCTCTTAATAAAGATGATGACACAGGGGCAGAGGATGTGGCTCATTGGTGGAGTCCGTGCTTAGCAttcatgaggccttgggttcaaattcattgacaaaaaaagaaaaag------------------------------------gaagaagattaAACAGAAACTAAATAAATAGGA----------------TTgatcagagaga---------gaaaagattgt------------------GTTTAGAG------------CAAAGGATTCACTATGCACCTCATTGCCTAGCACTGTATCTGGCATATGGGACgtacttgataaatatttgttgaatgaatgaataaattcatgaTTTTACTGGCCTTCTAAACCTGAGACTTGGTGATTCATAAAGCCTTTCTTCcagttctctttcctttcttccttttctgtactA--------TATAAGCAATTACTCATATTTTAAACCACTAATTTAAGGACTCTTAATTATATATAGTATTGTCATTTATT---CTCCAATTACTTTAGGCGTTTATATTCTGCCTCCCCAACAAAAGTGCTAGTTTCCAGAAATCAATTCCACTGAATCAACACGTATTGGGCAGTATGTACCACGTTCTAGAA-CTGGCTCTACAAACCTGATGTTCTAAGGAAGACAGAAACATTAAGAGATAGTTCACTCTACATTCTCTAATAGAGATATACATAAAATGCTATCATCAAGCCTAGCGTGgcgccagtaatcccagcacccaggaggaggctgtggcagaagaCTCTTGCAGCAAgcttagcctgaactacatagcccttatct-----taaaaaca---aaaacaaaaaacgacTCATCATCA-GCGAGGATAAGAATT----TTGcaaaaggagctggggata-------tagttca-gtggcacagtgtctacctgacaaatgtgaggtcctcagttcaattcccgataccaaaaagaaaaaaaatatatattttt-----------------------------------tttg-------------caaaaaat--------gGGATCCAGGAAAGCTACAGGTAGGAGGTATGAAGCTGAGT---CTTGACAGATCACAGGAGTTTGTCAGGCTCTTAGGACAG-------------TGTTAATAGATCCAAGCTAGGAGGCTGATGCTATAGCAAAGAGAAAATGTGTAAGAGCGAGCTTCCCTGATTTGCTGATTCAATCTCTCCCCTGATGCGTGATAGAAAA------------TCTGATCGTCGCAGCAATGGGAGCCCAGGGGAGAAAAGGTAGGGAGCCAGAAGCGGGTTGATCCAACAGGCTGCCGGAAGACGT---CTGTATTGCAATCTGTCTCAGGTGAACTACTCTGGAAAGTGTGGGACCAAATCAGGTTACAGTCACCAGGTCAGAGGCTTACCTGCTGCCCCTCCCCCACACGGAGCCGGCGCCGAAGCCAACTCTAAATTTGCTTCTCTTCCTCAAGCTGGCCGCATTCTAGGCCCGCCTCCCGGGGCTCCCTATTGGCCGGCTCTCCCAGCCAATCTAGGAGAAGTGGAGGAGAGAGGTCTGCCCACTTGAAAGCAAAGCAGCGGAGGCCGGGAGAGCCCG-----CCGGAACTAAGGC-TGAAAACCGCCGCTCTGAGA

a score=345680
s chr3            96595141 9321 + 160039680 [encoded data, 10479 characters]
s HiC_scaffold_1 106091146 9830 - 233722169 [encoded data, 10479 characters]

a score=5243
s chr3            96611355 238 + 160039680 ccggcctcgtaaggttatgattgg-tgggtacagcacccgatat---ttagtaagtac--tccatgaatgtGATGGAGCTACTTACTGGTGATGGC-TGTCACTCTCCTAGGCCAGTCGACCAATTGTAGAATACCTGACGTGTACTTTATCCA-CAGTAATAATGGCTGGCTGGCCCTGGAAACACCACCTATAGTATTTAAGTTAAGCTCCTTTGGTATCCAGTACTAATCAAAATGTGAGATA
s HiC_scaffold_1 106105393 230 - 233722169 ccagcctatgaaGTTTATTTTCAAATGGGTAAAATACTACATATAATTCAGTAcatatattcaataaatgttag---------cacTTATCATGACATATTATTGTCCTAGGTCAGCTGATTAACTGAGGAACA------ATATGCTTCATTAGGTAGTGATA-CGATCTGCTGACCTTGGAAACTGTGCCACCAGTATTTAAGTTATTTTCCTTTGGTGTCTAGGACTAATCAAAGTGTAAACTA

a score=20647
s chr3            96614381 392 + 160039680 CCTCTTGCAGTGAATGTGGTGGAGGCCCTTCAGGAATTCTGGCAGATGAAACAGTCTCGGGGCGCTGACTTGAAGAACGGGGCTCTGGTGGTGTACGAGATGGTCCCCTCCAACAGCCCTCCCTACGTCTGCTATGTCACTCTGCCTGGGGGGAGCTGCTTCGGGAGTTTCCAGGTAAGACTCATGAGGCTGCAG---AAAGGGTAAATGTGTAAGTGCTAGTAAGGACTTGTATCA----TTTGGCCGTTGGTCTCTGCCTGATGTCATGGA-TATGAGGAC------TAACTCTGGGCAAATCCTTCCAGCAAGCACCTGAGGCTCGTGAGATCACAGAGGAGCCTCAATCAGCATACTTTG-TTTTGGCCT---ACAACTCAAACCCATTTCAAATTTGAGCAGTTA
s HiC_scaffold_1 106105814 409 - 233722169 CTTCTTTTAGTGAATGTGGTGGAGGCACTGCAGGAATTCTGGCAGATGAAGCAGTCTCGTGGGGCCGACTTGAAGAATGGGGCTCTGGTGGTTTATGAGATGGTTCCTTCCAACAGCCCTCCCTATGTCTGCTATGTCACCTTGCCTGGGGGAAGTTGCTTTGGGAGTTTTCAGGTAAGAGTTGTGAGGCAGCAGTCATAAACATAAAAGCCTAGGTACTAAAAAGGACTTTTTCTGTTGCTTTGGTCATTAACTCCCTGCTGAAATCACATAGTCTAAGGACCTAAAGCAATTCTGGGAAAATCATTCCGGCAAGCATCTGAGGCTCATTAGATCATGAAAGAACTTCAGT-agtgtgtttttctttcagtctgtCAAAACTCAAACCCATTTTGAATTTTAGAAGTTA

a score=26079
s chr3            96616004 2832 + 160039680 TATGAATATTATCAAGAACTGTTTTTTTTCCATTTCAGAGAGGAAGGCAGCCTTCCAAAATGCCACCTTAAAGAGTCTGGAT-AGAATTAAAAGAAGATAATAGATACCTTTGGTTAG-TTTTCATGTGGTT-GTGTCACCATCAGATATGGTTGGAGC-CCTTGCTGTGTC---------TATAGCACCTTGGGTTTCCTCATCATATGACTTACAATA--TATCATTATTGCTTGTCTTTGCAA-GGATT--------CCCAAATG-------TATCTGTTTTTTCCCCTCTGTATATGTGTATATGTGTGTGTATACACATAGGATTGAACCCAGGAC---CTTGCAAACTATCTTTCTTCTTGGTCAGTATTAAAAACTTGCCACCCA-TTCAGAG-----TACATAGATGACAATTTA-----CCTATCGCATGAGTAAAACCCACTCCCACTATAGCTCAGTTTTTGCCTTAAACAGAGATTTCCTAAGGAAATCTCTCAATCTCAACCTCAGTCCCCCCCACCCCCACCCCCCTCCATagacgggatctgtagtcctggctgttctgggactcactctgtagaacaagctggccctgaccgaactcatggaaatttgcctgcattaaaggtgtacaccaccatgcctggcttggtagctttgttttaAATCAGACGACTAAGCCTTTTGGCTCAACACTTGAGCCATTTCAGA----TAAATATAAGCCCAGGATGACTAACGATTACTTAGTTTCCCATTTTCGTTCGTGGTGTGCACGAGTGTGGGTGCATGTACCCACGCCTGCtgtgtgtgtggaatcctgaggctgacatagagaaacatcctcagctactctcccaccttcctcatcagtgcggaatttctcagtcaaacctacagtgtgccaacatggcggctcttgctagccagcttgctctggggatcccagctctgctgttccagaggctggaacctcaggcaggcatcatgtatatgggttccagaacctgggagtctgaattctggctgtcacacctgtgcagcaagtcctt-taacactggccca---tctcagccccCTTTCTTTCCTCAGAGTATTATGGCTCC--TTCTCAACCCATCACCATCTGAAGGGCAGGCTGAGTTTTACTTTGATTT--GTTATTTTCTGAAAG--TCAAATTATCTGTTCTTGGCTTCTTTTAGCTTAT----TTTACATTCCCCTTGGCAGGTGGAATTTTCCTAGTGATTTTCTTCACACCGACTTTTTTTAGTAGTAATATTATGGGATAAAGTAGTTAACAGGTTAATAATA---AAGTAGAAATAGAGAAACTAAAGAAACAAAAAATCTTAGTGTGG------ATATATCAAGTTCCAT--------ATGCTGTCTCAGAGGGA--ACTG-----------CCCTCCAGGGGAA---------------------------ACCAGGACTTATCAATATAGTTAAGTGACATCATCTCCCAC------------TGTCCCTTTGaaagctgaaacatcaagccaatgtggtaatacacgcccgccattaatcccagcacttgggaga--------gagagatctgt-----gttcaaggtcagcctggtctacatagtgagttccaggacagccggagctacacag---------------------------------------------------------------agagacagaca------cct--------tatctca-------------------------------------------------gaaaagcaaaCAGCTATATCACTCTTCT--------------------------------TAATCATGAG--TGACCAAGGCGCAGAGGCTTCTTCAGCACCTGCTAAAGACTATAGCA---------------------------------------------------------------------GAAGGCCATGATGCCTAAGGATCTGAAGTCAGGGTGATCTGA---CTTCTGAACACTAGATTTGCCCTAAGAC---CATGTTAGTT-----TTAAAAAGCTG---------TTTCCCTTGTTTTCCTCAGTCATCATTCCTTCCCTCTGTGACCCATCTTCCCTGCATTTACTGCAAG---CAAAAAAGACA----------TCTTCAGCCTTAGCTCCTATGGAGGTAG--CTCCTCTGATCTGCTGTA-------GAAAATGCCTGTTTACAGCTAAAAG-AACGTGGAAGAATCCCAGATGGGTGCTTCCAACAGG----------------------------TCATGCATGGCCTTGTTTAAATCTTGGGTTACCCAGA---ATTCAGAGAG--CCTTGCCTGAC---------------------------------------------AAACTGGCTTTTGAGTAATTAGTCC-ACTGACACTTTACATAAAGGCATTTTCCATGTCTTATGGCTATCTGCTGACTTCGGCAGCTTTCCTAGCTCTGCATTCAATTT--TGTAGGAG---TAGTCATCTCCAATTCTTTAATGACTTCAGGATGTTGAGTCAAAATTGT--TTCCAAACACCATG-CCATTTTTCA-CTAAAGCTTCGGAAAGTGTGATGAATGCAACTGATTCATCCATGGTGTCCAAATGTCCTCTTCCTCAGTGGTGTCCTCCCTGCGGCTCCTCCTCACTCCTCAGTGGTGTCCTCCCTGCTCCTCCTCCTCCCTCCTTGGTGGTGtcttccctgctcttcttccctcctcagtggtgtcctccctgctgctcttcctccctcctcagtggtgtcctccctgctcctcctcctccctcctcagtggtgtcctcccttctcctcctcctccctcctcagtggtgtcctcccttctcctcctcctccctcctcagtggtgtcctccctgctgctcctcctccctcctcagtggtgtcctccctgctgctcctcctcctcctccccctcTGAGATGCACACGTGTATATATTCTCACTCTTTCTCTCCTGCCTAGTTTTGTCCCACAAAAGCTGAGGCCCGGCGAAGTGCTGCAAAGATTGCATTAATGAACTCTGTGTTTAATGAGCATCCATCCCGAAGAATTACTGATGAGTTTATTGAGAAGAGTGTCTCAGAGGCCCTGGCATCTTTCAATGTAAGGAACTTGGAAATGGGAGGGAGCATGGGGAATGGGAG----AGGCAAGGAACCCATCCATTtttg--ttcttttctgtttgta-------tttgattattttgt
s HiC_scaffold_1 106106921 2650 - 233722169 tgtaaatataataataaaatatttttt--acattgtaGAAAAGAAATCATCCTTCTGAAATGTGAACTTAA-GAATCTGAATGAGAATTTCAAGAAGACAATAGATACATGTGTTTAGATTTTCATATGGTTTGTGTAACTCTTAGATAAGATTAGACCTCCTTGCTTTGTGCTTCTTTAGTACTGTACCTTGAAT--CTTTATCACATTGCTTATTATACTTATCATAATTGTTTGTCTCTCCAATGGACTAGGCTGTATACAAGTAGAGATCATATCTGTTTTTT------------------TAAGTGC-----------TGAGATTTGAGCTGAGACAGACATGTGAGAAGTCTACTTTCTTGTTTAGTGTTAAATCTCTACCACCCAGTTCGGAGCCCAGTACATAAGTAAGCACTTAGTATGTCTGTTGCATGAATGAGAGCCACT------GAAGTTCAGCTCCTGCTTCAAAGGGAAACAGTCTGAGGATGTTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCACATCTGGTGACTTAAAGATTTTCCTCAGAACCTCTACcatttcagagaaataaatatatgccCTGGATGACTAATGCTTA--TGACTTctcttattag----------------------------------------------------------------------aaaataaaatcttt-------------ccttctt-------------tttccca------------------cATCATGACAGTGTTCAATAA------Tgatctgataatttttttttttgtctttt------------------------tcctttttatcggtaccag-------ggatcgaactcacaactgcc-tgcttgcaaggcaggcgcttatgccgctgagctaaatccccagccccaatgatcTGATAATTGTATAATGGTGCCCATAATTGGCCCATTATCGTc---------------------atgtgatttcttttactttctgaaaGAGTAGATTTATCTAT-CTTGGCCTCGTCCAATTTATATATCTTATATCCACTTTAGCAAGTGAATTTTTCATTGTGGTTTTCCTCACAAATGATTTTTTCAGAAACAGCAC-----AATAAAGTAGGCAGCATGCTAGTAATAGAGAAGCAGAAACAGAGAAATTGAAGAAGCAAAagtgccaagtgtggtggcacatgtctgtaatcccaggatgtgagaagctgaggcaggaggatcactgtgagttcaaagccaacctgggcaacatagtgacactgtgagttcaaagccaacctgggctacatagtg-agttcagggtcagcatgagctacatagcaagatcctgtctc----aaaaaagaaaag--aagccagtgTGGTGATAtactactg----taatcccagcacttgggaggctaaggcggGAGAAtcttttgcaagtttgagaccagcctgggctacaaagtgagcccaaggccagcctgaactgcatagtgaaaccctgtttaaaaacaagaaaaaaaaaaaaagaaaagaaagaaagaaaagacaaggaaaagaaacaaacaaaaggaccTAAGGTTAATATGTCaagctcaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaaagaaa-atatcaagctCCAAGTACTGTCTCTGAGagaactgtaagctaaaataatAGTGAGGATGATTAAGTAGTATAACATaatcctgtactttttaaaaattacattatgagtttctttcttttctctagtgaCAATCATAATTGACAAAGAACAGTCATTGATGAGGAATTATAAAGGAATTCTTGGTGGCCAGAGATTTTAAATT-GAATGATTTAAGGTCTTCTGAAAATCAAACTTGTTCTATGACATCTATGTTTGATACAGAGTAAAAacatgaattatattttaattttgtcttgct---------tttcctTGCTTTGCCCCCTCTTCTCCTTGCTTCTACTGAAGGGGGCAAAGAAGACTATAAATTTCTTCTTCAGATTTAGACTCTGTTCAGGCAGAGCTGCTTTGGGTCACTGTATTATTGGGGAAATTGCTGTTCACAGCTAAAAGTAAAGACTAAGA--TCCAGA-GGGTGCCTCTGATGGAGACCAGAAGCCTCCTCTGCAGAAGTTGCCTAAACACAGTTTTGTTTCAGTCTTGGGTTATCTAGAGGAATCCAAAGAAAACCTTGCCTATCTGCAGAACAAGAGAACAAGATACAGATTTCCAGCAAGCTGGCCAGAATCTGGCTTTTGAGTAATTAATTCTGTTGACAGTTTAAACAGAGGTATTTTTCATGTCCAGTGGTTATGTGCTGACTTCAGCAGCCTTCCTCATTCTGTATTCAATTTGGTGTATGAGCTGTAGCTGTCTCCAGTTCCTTAATGACTTCAGGATGTTGAATCAAGACTGTGTTTCCAAAAACCCCAACCATTTTACaacaaaaacttttcaaaatgtgTTGAACATAACTCTCTC-CAAAAAGTGTCCAAATGCCTTCTATCGCAAGCGTTTCCTTTCTACTGTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG-------------------------CCTCTCTCTCTCAAACACACATCTACACAGACTCTCACT--GTCTTCCCTCTCTAGTTCTGCCCCACAAAAGCTGAGGCCCGGAGGAGTGCAGCAAAGATTGCACTGATGAACTCTGTGTTCAACGAACACCCTTCCCGAAGAATCACTGACGAGTTCATCGAGAAGAGCGTCTCCGAGGCCCTGGCATCGTTCAATGTGAGTAACTTGG-AGTTGAAAGGAGGGTGAAGGATGGGAGGACTGGCCGAGGG---CATGAGTTCTTGCTTCCTGTCCTGTCTAAAGCTCTGTTCTGTTTATTCTGT

a score=16889
s chr3            96621237 435 + 160039680 TCTATTGGATAGTGCCAGTCAAAATAATC----TGACTAAAGATCTATTTGTCATTTTCTTTCTCCTGTTACCAGGGTAACAGAGAGGAAGCTGACAACCCAAATACGGGGATTGGTGCCTTCCGATTCATGTTGGAATCTAACAAGGGCAAGTCAATGCTGGAGTTCCAGGTACAGTTCCACTCACATCCCTGGCTCTAATAAAGCAGAGCAGCCTGACAGACACAGCAATTTTAATGCCACCTACTAATCCTTACCTCCTTATTCAGAAAAAGACACAGGGAGAAAATGTGGTTAAAA---TTTACAGTGCACAATTACCTCTCTTCCCCCTCGGGGTGCATACCAGAATTGGTAATTAT--AGATGCTTCCACAATATGATTTGTAAAACTTTTCCCC---TGTAATTCTGATGCAGTCTCCTAACTTAAACTCACTATCCTGG
s HiC_scaffold_1 106115673 404 - 233722169 TCCACTGGATAGTGCTGCTCATGATGGTAATGATGATTGAAAATCTATTTCTCTTTTCCGGTCCTCTGTTACCAGGGCAACAGGGAGGAAGCTGACAACCCAAATACGGGGATTGGTGCCTTCCGATTCATGTTGGAATCTAACAAGGGCAAGTCGATGTTGGAGTTCCAGGTACTGTTCCACCTGCTCCCCTAGCTCTGATAACATGGGTCAGCCT---------AGTAGTTT------------------CTAACTCACTTATACcgaaaagga---aaggaataaa---ggttagaatatttttcaaaatctaaataCCTTCCTTTCTCC---AAGAGCATATTAGAGTTGGTGCTTTTGCAGAT------ACAAAATTGCAGATAAAAAATTCTCCTTCATATAATTCTGATACAGTCTCCTAA-TAAAAGTCATTATCATGG

a score=9496
s chr3            96622102 215 + 160039680 aaaaatggccttcacGCTGGTGTTTCCTCTCGTTT---CTCAGGAGCTGATGACAGTTTTTCAGCTGCTGCACTGGAATGGCAGCCTTAAGGCCATGAGGGAAAGACAGTGCTCTCGACAGGTAAGAG------TCACCCGAGAGAAAAGGGCAGGAGGAAAACTACTTTGG----GCTGTTAA--------------ATGGTTACTAGGCTGTGACTACTGAAGGCCTTATTCTAGCATCT
s HiC_scaffold_1 106116057 239 - 233722169 AATAAAAGTCATTATCATGGCACTTCATATCTTTTTCTCCTAGGAGCTAATGACAGTTTTTCAACTGCTGCACTGGAATGGCAGCCTTAAGGCCATGAGGGAAAGACAGTGTTCTCGGCAGGTAAGAGATCTTATGGGCTATGGGAATAGCATAAAAGG---ACTACTTCAAGGTCGCTGTTAGAAATAAGGAAGCATATGGTTACCTGGCTATAAATATTTAAAGCCTTATTTCAGTATTT

a score=44974
s chr3            96623141 3046 + 160039680 ctgggcgtggtggtgcacgcctttaatcccaacacttggaagacagaggcaggtggatttctgagtttgaggccagcctggtctacagagtgagttccaggacagccacggctacagagagaaaccctgtctcgaaaaacaaaaCAAAACAAAAAAGATGGCCACATTTTCCACCAGTCAAACACCTTCTACATGCT-GTTGGAGTACTGGAAGGTGTGACCTGTCCTTGAGCCTGAACTTCACTGTGCTCCCCACAGCAGGGCCCTGTGCTTCTCTGATCTGTGCATGTATTCAACCTCCTGCTCCACGCCCTTCTGCTTTACATAAATTCTTATAAGACAGGGGGAAACAACTCTTTATAGGACATATGTGCAAAGCAGGTCAGACAATCAAGGCTAAGTTCTATTGGGATCACTGTGCTATATGATATAGGACATACGTCTTATCCATCAGGGTCACTGTGCTAAATGACATGTATGTCTTTTAACCTTCTCAGTGATCTTTGCGTTCCTCTCT--GACCAGGAGGTGTTGGCTCATTATTCACATCGGGCCCTGGATGATGATATTCGCCACCAAATGGCTTTGGACTGGGTGAGCCGGGAGCAGAGTGTGCCAGGGGCACTGTCAAGAGAGCTGGCTTCCACTGAACGGGAACTCGATGAAGCCCGGCTGGCGGGCAAGGAGCTGCGCTTCCACAAGGAGAAGAAAGATATTCTCATGCTGGCTGCTGGGCAGTTGGGCAATATGCATTCTTCCAGCTGCTAAGCATCTACCCTC-TACTCGCCATGGCTCTTCAGGCCCCTTTTTTGTATGTCTCCTTTTTAAGACTTAGGATGATGATTTCTGTATATACTTTCTCAATTTTATACTTTAAAATATAGATATATATGTATAAATTCTACACCTGGCTCCCTATTTGCTAAGAGATCCCTTTTCTAACTTCCAGTTTGGGGATGTAGTTACCTTTGAAATATCACTAT-CCATTTTAT----------------------AGCGTGGTTGGCTCTTAAACCTTTAGAT--------TATCTAAGTCATTAACAT-GTACAGTTTTCTAAGTGTTCATAT-----CTCTTTCTTTTGAAAcagcagcacacaggtacgtgatgactcagctatgctctctgcactcagcagtctgagacagtattgctgtgaatatgaggccagcctggactacataataagttccaggtcagcatgggctacagtgtgtaagatcctgtttcagaCCCCTCTCTCCCACACATAAAACCGCCCATATTCTTGGTTTCTACTAGACGAAAACAGGGT-------GGGAGCGTCAGGTTTTGGT-----TTGAAGTGA--CCGTCCGATCCACCTCCCCTGCTC---ACTTTCCTCCTTCCTTGCCTCTAAGTGCTCCTTCATTTGGGGGCTTCCCTACCTTAT---CCAGAAGATCTGGCTTCCttttgttttgtgagacatcttattatggcctggaactcatcctatagattaggagggcttcatgcttgtggttgtatcctgctgaaatcataggcatgggtcacaatgAGAAACTGCCTAGGAACAAG---AGAATGATACACTCAATTCACATGGGGTGGGTAGGTGGCACTACCTGAGCTGCTTCTGAGCTTACCTAC-CCCTGCTAGCAGTCTAGCTTTCTGGGTGTGAGAAGAGGGTAAGGGTTGAGGCT-GATACTGGTACACGCACATGTGAGCACACACTTTTTTCCATTTGTtcatgtagcccaggctggtctcaaactcttcttctggctgagaatggccctgagctccagacctcccgcatcagcctctccctaggattacagtgactaccacCGCAGCTG----------CCTTAATCCTCCCCTCAGTGACAAGAAGCATCTTGTTCTTTAGAAACGGTAGCTGTTCTGTTTAGAGAGAA----CCATGTTCCTCTCTTGTCCACTGAGCTGTAACTCTGAATTTGTGGAGAATTCTATGTAGTAAGCTCAATTTCCCTTCTTTCTGTGGTCTCTGCTACATTGTATTATTGTTCAGTGCACTTTCTATCA--AGTTGGGACAGTTA------ATGCTACTATAATGCGACTTCCCATGTGACAATTGCAGTTTGATTTTAGGTTA-GGagctgggtctggtggtgcaggtctgccatctcagctacaaaggaggccaaggcaagattggaaattcaaggtctacccca-----------gctagagcaagttcaggggcaacctg-ggtaatttagcaagactctatctcaaaaa----tatgaagtaaaaacaggactgaggaTATAGCT-------------------------TAGTGGAAGAGAG-TCAGCCTGGCATGTGAAGCCTG---AATTTAATCTCTACTGCAAAAaggggaggggagggaaggggaggggagAAGACACTTGGC---------------------AGGAAGAGGAGGGAGGGGAGCAGAGTTAGATCAGTTAGCTCCCTGGGTCGGAACAAGGTGAAAAGCAGCTTTCTTGCTTTTGAAATCATCTTTGTGACAAGGACACATGGGGTCAG-GGTAGGGTGTCCAGTTAAAATAGTGTCACTGCTTAGAAAGGGGTACTTGGATTCCTTTAGTTAGCTTAGCTCTGTCTCT-TGTTTCATAAAACACA--CTGGGTTAGAATAGAGGCTCCTGCATTACATGGTTTGTGTCACTGTTTTTTGTTGGGTTTTCTttttggtttttcgagacagggtttctctgtatagccctggctgtcctagaactcactctgtagaccaggctggcctcgaactcagaaatctgcccgcttctgcctcccaagtgctgggattaaaggcatgtgtcacGTTTTAAATTGATAGTTATAACCTCGATGCCACGAATCCTGCAGTTTCTCCTGTGCTCCTTTCTTTGTGTCAGATGGGTTAAGGGTTATCAGTTTGGGGAAGAATTGTCCTTGTACCCCCTGGA---ATTATTTTTCTCAAAAATCCAAGACTCCAAAGAACATGGGAAAAA--------TTGTTCTGTCCACTTTTGACGTTGAAGATTTTGGTTATCCTTTTCGTACTTTCTATGTATTTTCTATGTAAAATTTTACACAATTAAAAATGTTTTTTTGTCTAGTAAGCCAGAATGACttttt
s HiC_scaffold_1 106116332 2469 - 233722169 ctgGGTGCTGTGAcacacacctgtggtcccagcacttgggaggctgagggcggagaatcactgagttcgag-ccagcctggactacatagtaag-----------------------------accctgtttcaaaagaaaaaa-atttcaaaaggga-------ACTCTCTATCCCTTTAatctcatttaaattttcattgggATACT-------------------TTTGCCTG-------CCTTGCTTCCTCCACCAGGG---------------------------------------------------------------AATTTCCCTTAAGA-----------ATCTCCTTGGAAGACAGCTTT-------------------------TGGCTTCAGTTAGGAGTCTGAGGCTTCA------AGCACCTGC-----ATCCAGTTGGATCAAGGTGGTA--TGACATGAAC----CTTTACCTTCTCAGTGATCTTCATGTTCCCCTCCCCAACTAGGAGGTGTTGGCTCATTATTCACACCGGGCCCTGGATGATGACATTCGCCACCAAATGGCCTTGGACTGGGTGAGCCGGGAGCAGAGTGTGCCAGGGGCACTGTCTAGAGAGCTGGCCTCTACTGAACGGGAGCTGGATGAAGCTCGGCTGGCAGGCAAGGAGCTACGCTTTCACAAGGAGAAGAAAGATATTCTCATGCTGGCTGCTGGGCAGTTGGGCAATATGCATTCCTCCAACTGCTAGGCACCTTCCCTTATATTCCCCAT---CCTTGGCACACCTTTTTTATATGTCTCCTTTCTAAGACTTAG---GATGATTTCTGTATATAATTTCtcaattttatac-ttaaaaaatatatatgtatgtataactTCTATCTCTGGATTCCTG-TTGCTAAGAGGTCCGTTTTCTAACTTCCAGTTTTTGGATG-AGTTTCACTTGAAACATCTCCATCCCACTTTACAAGAAATAGTAACTGTCTCTAGAGCATTGTTGGCTCTTACACTTCCAGGTGTAGTCTCTAGTCATTTCAGTAACACAGTATGATTGACCAAGTGTTCATATGTTACTTCCTTCTTTTAAAAGAACA-----------------------------------------AGTAGACTGA------------------ATGAAGACTGTATGG----------------------------------------------------------CCCACTCT----------GAACCTC----ATTCTTGCTTTCTCTTGCATTCAAACAGGGTACATGTAGGAAGCCTTTGGCTTTGGTTTATCTTGAGCTGAATCTGTATGgtatcctttctttcctctctactTCATTACTCCTTTGCTTCCAAATCCTCCTTTATTTTGAAGCTTTCTTACCTTATTACTCAGAAGAT---------------------AGTAGAGTTACTATA-----------------------AGAAGTTCTTAA--------ATTGTTCC----------------------------TGAAAAACCACCTGGGAACATGAGAAGAATGATAAACATGATTCA-----------TGGGGGTTACTA--------------GGGCTTGTGTATATCATTCTAGCATTCCAGATTTCTAGATGT-ACTCTATAGTAAGGAATCAAGCTCAATGCTATT---------TTTCAGTGTTCCCTTTTT----------------------ACTTCTCCCCTACTCTCACCTTAATTAAG------TCTCATATTTAAACCTTCC-----------------TGCCTATAGAGCTTG-----GTAGGTGATAAAAagccccctgcccctccccatA------------ATTTTGCTGTATGGAAGTAATAGCTATTCTATATAGCAAGTAAGGGCCAAGTTCCTCTCACTTCCACTAAGCTGTTGCTGTTCACTACTTTAGA--TGTATGT----ATCTTAGATTCTCATCTGTT--TTGTCTCT-TTGCCTTTTCTCCACATTCATTA----TTTGAGCATGAGTTAGGAAAACTAGACAAGACCTTGGTATTAGGCAACTTCCTCACTGAAACTTTGGG--AGACtgcaggaaagggaaagagaaccAAT------GATCTGCTATCTGTGTT---------------------TTTGATATGGATATCCTCCCCCACCTTTCTCTTTGGTGAAGTAAGAG-AGAAATTATCTGCAGTAAAACTACAAAATTCTCCTTTGAAGAACTTTTTGGAG-AATTACATGTAGTAAGGTATATTTTCCCCTTGTTCTGTAATCtcctttatattatattattgttCAGTGCACTTTCTAAAGTTTGGAAAGTTTAATGT-TCCTGCAA-------------------------TGAATTTACATTTAATAACTGCATTATTTACGTTTAGAAGTAGATTAAGAAAGAGACCATAATTTGCTGTTTGGGAT---TAGATAGGAGCAAGATAAAAGGgaattttcttgcttttgaaatcatC-TGGTGACTAGTACATATGAGATCAGAGATCAGGCGTCTGATTGTAGTGATGGTA--------AAAGGAG--------CTCCCTTGATTCTCTCAACCCCATCTTTGCATTCTGTGGAATACAGGTAGGGTTGGAGTAGAGGATCCTACATTAAATAATAGATGcatatattt--------gttttcatt--------------------------------------------------------------------------------------------------------------------------------------------aattgatatTTATAACCCAGAAATCATACACTTTCCAGTTTCtcctctgcttcttcctctggG-----------AAGAAGTGTTGATTGTGCAGAGAATTGTCTTTGAACCTCCAAGATTTattattttcctcaaatattCAAGCTCCCAAAGAACTTGAGAAAAAAATGTTCCCTAATCTGTCTGC-TTTGGTGTTGAtgattttacttctctttttagtactttttatgtattttgtatgtataattttgtaaaattaaaaatagatttttgtctAGTGAGCCAGAATGACTCTTT

a score=6551
s chr3           96625064 152 + 160039680 TTTGTGGAGAATTCTATGTAGTAAGCT-CAATTTCCCTTCTTTCTGTGGTCTCTGCTACATTGTATTATTGTTCAGTGCACTTTCTATC---AAGTTGGGACAGTTAATGCTACTATAATGCGACTTCCCATGTGACAATTGCAGTTTGATTTTAG
s HiC_scaffold_1 76155391 153 - 233722169 TTTTTGGAGAATTACATGTAGTAAGGTATGTTTTCCCTGGTTTCTGTAATCTCCTTTATACTATATTATTGTTCAGTGCACTTTCTAAACAGAAGCTGGAAATTTTAATGCTCCTGAAAT-TGAATTTCCATTTAACAATTGCA--TTGTTTTTAG

a score=17022
s chr3            96629788 427 + 160039680 CGTTTCTAGCGC--TTCAT--AGTGGGGCCGCCTACATTGGCGAATTTTCACCGCGCCGAGGGCGGGACTTGGAGGCAACCTTTAATTGGTCAGCCTAACTCGTGACGTTTTTCTTCTGCGACAGCTT--CCCGAGGTGCTTAGCTTC-----TAGAGACTCAGAAAGCGCCGAGAGAAGCAAGATGGCGGACGTGCTGGATCTTCACGAGGCGGGGGGCGAAGATTTCGCCATGGATGAGGATGGGGACGGTGAGGAGAGTGGAGGCGACTGCGGGAAGAGGGGAAGGTGCGAGAGGGGAATGCAGTAG---AAATTTTCCTGGGACGTC--------ACCCCACGAACTGGGTCTGAAAAGATAGACTCCTCCCCCTTGGGAAAGGAATTAGGGGCGGAACTGGGAAGGGACTGAAGCTGGAGTCTGTGTCGAAGCTTCCAGATAGT
s HiC_scaffold_1 106123399 440 - 233722169 CACTTCCGGCGTCTTTCATTAAATAGGCCCGCCTTCACCTACGTATTTTTACTGCGTCAAGGGCGGGACTTAGACTTACCCTTTAATTGGTCAATTTCACCGGCGACCTTTCCCCTCCGCGACAGTTTTTCCCGAGAT-CCTAGTCTCAGCGGTACAGAC---AAGAGTTCGTACGAAGGCAAGATGGCGGACGTGCTGGATCTTCACGAGGCTGGGGGCGAGGATTTCGCCATGGATGAGGATGGGGACGGTGAGGACAGTGGAGGCGGCTACGGGAAGCGGGGAAGGTGCGAGAGAATAGCATAATAGGAAAAATATGCTCGGAAGGGTGGATGGGAGCCTTGCAACTGGGGGTCGGTTAG--AGACTCCGCCCCCTTTGGGAGGA---CTGGGGCGGGACCGGCTGGGGACTGATCCTGAAAGCAAGGGATACGTTTTCTGATAGT

a score=46638
s chr3            96630260 1771 + 160039680 CTTATTTTTGTTGCTTCTTATTTTCTCACCTGGAACTCTAGAAAGCATCCACAAACTAAAAGAAAAAGCAAAGAAACGGAAGGGCCGCGGCTTTGGCTCCGGTGAGTGTGGGG--AATAGGGTAGAGTGGTCTAAGAGGCAGAAGCCCGCGAATTTGGGAGTGTGAGGGGGACACATTTGGAGGACAGTTTTCGGTGATCTGGTATGAATTCTTT-TAGAAGAGGGGTCCCGAGCGCGGATGCGGGAGGATTACGACAGTGTGGAGCAGGACGGCGATGAACCTGGACCACAGCGCTGTAAGTAAATAGGACCTATGGGGAGTCTGTGTGCACTGGCACTCAAATGCAAAGTAAAGAGTTGTTTAACCAGTCTCAGAAAATTGCTTATTGTAGGTTCTTTTCAGAATTTTTCTTTTTTAGTTTGTTTGGTTTTGGGTTTTTTTGTTGttgttgttttggatacagggtttctctgttaagccctggctgtcctgaaactctttttgtagaccaggttggcctcaaactcacaaatctgcctgcctctgcctcctgaatactg----ggcttTTTAGCTTACATGTTCATACAAC-ACTTTCCCTAC-CCAACAGCTGTTGAAGGTTGGATTCTCTTTGTCACTGGAGTCCACGAAGAAGCCACTGAAGAAGATATCCATGACAAATTCGCTGAATATGGGGAAATAAAAAATATTCACCTTAATTTGGACAGGCGCACGGGATACTTGAAGGTAGATTTTCTTGCTTCCCTCACTTAC-----AACTCTTAGATA-CATTGATTATGTT---GTTT-TTGTGAGTTGATCAAGCACAGGTAGGAAGTGAAATGACATTGGAAATTGATTTT-GTTACCCACATGAAAGAGACAGAAACAGAATGAGCATGTTTGTGTATATAATGGGGATATGTGGTGTATAGCTGCGAAATTTTTCTTGTAACTATGCATTTCTGGTTTAAGGAAAAGAGTACTTGGTTGGTGAAGTAAAATTCTGATACTTTTTGTTGTTTGtttgttt-gtcttgagacagggtttctctgtataacagagccctagctgtcctgggctcactttgtagactaggctggactctgcctctctaatgctggaattaaaagtgtgtgtgtgacgcctggctAAGCTTTGATACTTTTATATGCTCCCCTAGGGGTATACTCTAGTTGAATATGAAACATACAAAGAGGCTCAGGCTGCCATGGAAGGACTAAATGGTCAAGATTTGATGGGGCAGCCAATCAGTGTGGACTGGTGTTTTGTTCGTGGACCACCAAAGGGCAAGAGGAGGTAAGATGAAGGGATGGGGGTTGTACATTTATTTATCTTAGTAAAGGGAACATGAGCAAGATA-AATAAGGA---TTCAGTATTAGATCTCTGATAT---TCCCCTTCTGTTTTTTCATTTTCTTAGAGGAGGCCGAAGACGAAGCAGGAGTCCAGACCGGAGACGCCGTTGATAAATCCTCTGTCGACTGGGTGGTCTCTCTACAAGTCCATTTGGTTATGCTGCCTTGGATAAACAGGGCT---AGGGCGGACCTTGTGTTTATATTTAATTTCTTACCCTATCTACTTGGCATTGCTTTTGAGTTTTAGAAAAAAATAAATGTTCCA-TTTTGTTTTCTATGTTTA----TTACTTTACTGTTCTGGAAACTGAACAACT----ACAGTGGGGCATTGTGAATGATTGTGAAGATCCTTCTGTCTGGCGTGGCAT------------TCTAAGTTTCTAGAAAGGCTCATGGAGACTGTTCAGCATTTCTT
s HiC_scaffold_1 106124348 1497 - 233722169 CTAGTGTTTGTtacttgttcttttctgttttgcggTTCCAGAGAGCATCcacaaattgaaagaaaaagcaaagaaacggAAGGGCCGAGGCTTTGGTTCTGGTGAGTGTGGGGGAAATGAGAGAGAATGGTTTAATGGGAG-----CTGTGAATTTTGGAGTCCCCTCCGGACTTAC--GGGGAAGAGTTTTTGGTGATCTGTTGTGTGTTCCTTATAGAAGAGGGATCCCGAGCACGGATGCGTGAGGATTATGACAGTGTGGAGCAGGATGGTGACGAACCTGGACCACAGCGCTGTGAGTGAA-ATAATCTGTGAGGCAGCTATGAGACC----------------AATAAA---------ATTCAGTCCAGGAGGAATG--------------------------------------------------------------------------GGATCAGAGATGACTAGGCTAGAGTCTGGACACACTGCA-----------------------------------------------------CTCCTGAAtggtgtttaaaattttt--ctcatgtgCTTGTTTAACCACCCTCCTTTCTCCAACAGCTGTGGAAGGCTGGATTCTGTTTGTCACTGGAGTCCATGAGGAGGCCACTGAAGAAGACATTCATGACAAATTTGCAGAATATGGGGAAATAAAAAACATCCATTTGAACCTGGACAGGCGTACAGGATACTTAAAGGTA---TCTGAAGTGACCCTTAGTTACCCCATAATCCTTACCCAGCATTGGTGGTGGTCATGTTTGTTGTGA-TGGGCTAGGAGCAAATTTGAAATAAGATGACATTGCAAACTGATTTTTGTTAGACACAGGAAAGAGACAAACAAAGCACA-------TTGTACGTATAATAGGGATATATGATTGAT------------------GTA--TACTCATTTC-----------ACAGAGT-----------------------TTGTAGGTTTTGCTATTTATGCATTTAGAATTGAGGATGGG---------GTAATGGA-------------------------------------------TGCCTCG-TGACACAGGAG----------GGTTTTGACATCTATCT------------TTTTACTTGTCCC---AGGGGTATACTCTAGTTGAGTATGAAACGTACAAAGAGGCCCAGGCTGCTATGGAGGGACTTAATGGCCAAGATTTGATGGGCCAGCCAATCAGCGTGGACTGGTGTTTTGTTCGAGGTCCACCCAAGGGCAAAAGAAGGTAAAGTGGA------GAGGGTAAACACTAG-------TGGTGAAGGGGATATGAGTAAAACAGAACACGGGTACTGCTGTATTATGTCCCTCTCATGGACTCTCCTCCCTCTTTACTTTTCCCCAGAGT-GGCCGAAG-CGCAGCAGGAGTCCAGATCGGAGACGGCGCTGACAGTTGTTCTGTTGTCCAGGTGGTCTCTCCAGGATTCCATTTGGCCATGTAGCCTTGGAGAAAtaatgctgggggggggggctttatGGTTGTATTTAATCTCTTACCCCTACCTTTGAGTGTTTCTTTTGAGTT------ATTAataaatgttccatttttgttttctacatttaaaatttcttttaccattaaaaGCTCTTAAACACTATTGATGGTAAGGTAGTATGAGTCATTGTGAAGATACTTTTCCCAGGCACTGCATTTTATGACATAATCCAGGTTTCAGGGTTAAAGTATAGATTCTGTTCAGTGTGTCTT

a score=6499
s chr3           96631429 443 + 160039680 AGGGGTATACTCTAGTTGAATATGAAACATACAAAGAGGCTCAGGCTGCCATGGAAGGACTAAATGGTCAAGATTTGATGGGGCAGCCAATCAGTGTGGACTGGTGTTTTGTTCGTGGACCACCAAAGGGCAAGAGGAGGTAAGATGAAGGGATGGGGGTTGTACATTTATTTATCTTAGTAAAGGGAACATGAGCAAGATAAATAAGGATTCAGTATTAGATCTCTGATATTCCCCTTCTGTTTTTTCATTTTCTTAGAGGAGGCCGAAGACGAAGCAGGAGTCCAGACCGGAGACGCCGTTGATAAATCCTCTGTCGACTGGGTGGTCTCTCTACAAGTCCATTTGGTTATGCTGCCTTGGATAAACAGGGCTAGGGCGGA-------CCTTGTGTTTATATTTAATTTCTTACCCTATCTACTTGGCATTGCTTTTGAGTTTTAGAA
s HiC_scaffold_1 77883985 308 - 233722169 AGTAGTATAC-CTAGC-AAATATGAAACACACAAAGAGGTTTAGGCTACTAGGAAGGGATTTAATGGCCATGATCTGACGAGACAATCAATTAGTTTAGACTTCTGTTCTCTTCATGTCCAACCAAAGAGCAAATGG------------------------------------------------------------------------------------------------------------------------AAAGGTGACCAAAGACA----------------CAGAGACA----TAACAGATACTTTGGTGTCCCTGGGATCTCTCCAACATTCCATTTGATTGTGAAGTCTTTGAGAAATAGGGCCAGGGAGTAAGTAACTCACTGTGTTTCTACTTGATCTTTTACTCTACTTGCTACATTTTTGTTTGCAACATTAGAA

a score=38324
s chr3            96635391 1956 + 160039680 CCTACAGCGCCTCCTGGCTCC-----CGCAGGCCCCACCCCTTGCTGCTGAGAATTTAAAGCAGAATGTGCTCCTAGGGGCGTGCTTAAAAGCCGGAGACCATCCCAGAGAAGGGTGAGCTGCCGGAAATGCACCCACGATCTC--------------------------GCTTCGCGTCCTGAAATTCCACTTCAAGGCCGGCTCCGGCTGCTTGGCTTTCCTGCCGCCGTTTGTCCCTCGCGAAGCCCCGTT-GCTCGCCCAGGAGGCGTGACTTGGGGCTGGAAGCAGG-CGGGCCGCTGCGCCGTGGGCCCG-GGCTGCCGCTGTCATGGACGCCTGGGTCCGCTTCAGTGCTCAGAGCCAAGCCCGGGAGCGGCTGTGTAGGTGCGGCCGACGGAGGAGCGCGGGCGGGA-GGGCAGAGCAGGGTCCCG-CGAGGCGACGG---GCGCG-CTACGGGG-TCCCTAAGGGTCAGCTGTGGCTAcgggggcccgcgcggccccggAGGCGTACTCCGCAGCCGGTTGTGAGATGATTCTTCCCTGCTCAAGGGAAAGATGGGGAAACTGAGGCATGAGTGGGCCAGCGGGGAGGCCACCTAGGTTTACTGTGTCCACAGAGAG-CAACAGTTTCCTCGCT-GCTGTGGTGGCACGAGGGGCGATCCTCTCG-----------------------------------------------GTTCTGCGTCCTCTCAC------------------CAGTTGTG--------------------ACCTAGGAGC---CTCGCTATCTCGGCTCTT-------------------------------------------CTTCGGTTTCCATCAGTCCAAGAACCTTAATCTATCTCTTAGTTTACCTACCCGGAGAACTAATCTGCCCTTCAACTAGATCTTCCTCTGTCGTGTTTCATGTATAAAAT---CGCAGTGTGGACGTCTGCGATGAACCCCGGGCTGCTTACT--GGCCCTAAACTTTAGGCCTCATCATTTTCAAAACTCTTAGTCTCTTAACTCCAAAGAGTGCTCTCCAC-CATCTTCTAGGCT-----TTATTTTCCTCGCATGTCTTTCCCTTCCCCTGGCTTTGAGGAAAAAAATGGAAAGATATTGGTGTGAAACCGAGGAAG-----------TGTCCCTGGTGGGGTTTTT-----------GTTTACCAAT----------TAttatttgtctgagtgtttggtctgcaagaatg-----tatgtgtaccacatgtgtgtctagtgcctgcaaaggacagaagagagtggtggatccctggaactagagttacaga--cagttatgagccaccgtgtgggtgctgggagtggaacccgggtcccctgcaagagc--aagtgctcttaacc---gcctcaccagcccACGGAGGATATGGTTGGCAGAGGGGTTAGGGAGGCCTGTCCCTTACTCTAC--GTGTCCTCCCCTCCAGGG----CCGCCCAGTATGCCTGTTCCCTT-CTCGGCCATGCTTT---------------------------------GCAGAGACATGGGGCTAGTCCCGAGTTACAGAAACAGATTCGA--------CAACTGGAG------------------------------GGTCATCTGAGCC------------------TCGGACGAAAGTGTAAGTAAAGCAGACCTTCCTC------------------------------------------------------TTATCATCCT--CAGCTGGTAGCCCATGGCCTCTCCTCCCGTTCTGCCAGTTCGCCATCATTTGCCACTCTCCTGCATGCCT-------------------CCAGTTGAGGTCAGAGAACAGGTATAAGGAAGTTAGCACTGATTGGAAAAACACGGCACGAGAACACT---------AAACTGGCAC-----------AAAAATGAATT---ACGATTGGAAGTTAAGAAAAAGAACAAATTATTTTTACTCTTTCTT--------CCTGTATGTTATTATTGCTTGCTCAACTTTTA----------TTTTTCTCTTCCCCACCCCCACCCC---TGCCTCTGGACTTCAAACCCTTGCTTTCCCTTGTTAATCTCTACAAGTGCTACGCCTGGGGAACTCAACAGATGCCCTGGAGTCAGCCAAAAGGGCTGTGCACCTGTCAGATGTCGTTCTGAGATTCTGCATCACTGTCAGTCACCTCAACCGAGCCTTGTACTTTGCCTGTGACAATGTCCTATGGGCTGGAAAGTCTGGGCTAGCTCCCCGAGTGGACCAGGAAAAGTGGGCACAGCGTTCATTCAGGTTGGTTTTCCTTTT
s HiC_scaffold_1 106132006 2294 - 233722169 CCTGCTGCGctttctggctccacccctgtagGACCCGCCT-TTATTCTTGAatatttaaagca--atataatgctAGAAGTGTGCTTAA------GAGACTGTTTTTTGAAGGCATGTTCTTAAAGAGATTCACGCACAATAACATGAGAAGGCAGATCCAAAGACAAGTGCTTCGCGTTCTGAAATTCCGCTTTCAGAGCTGCCttcacacattttcttttctgatactGTTTGTCCCTCGTGAGGCACCGTTAGCAAGCCTAGGAGGCGTGACTAGGGGCTGGAAGTAGGGCGGGACG--GGGCAGTGGAGCTGCGGCTGCCGCTGTCATGGACGCCTGGGTCCGCTTCAGTTCTCAGAGCCAGGCTCGGGAGCGTCTGTGTAGGTGCGGCCcaaagaggaaagggagagggatgGGCAGAAGAAGGTTCTGGCGAGGCGAAGGCAAGCAGGACTACGGGGATCCAAAAGGGCCAACTCTGGCTACGGCGGCCCGTGCGGATTTTGAGAA-----TCACAGTCG-TGAAGAGATTATTCTTTTCTGCTCACGggaaagatggaaaaactgaggcaTGAGTGAGCAAGCGGGGAGGCCATTTAAGGTTCCTGTGCCCACATAAATTCAACAGTTTCCTCACTAGGCGATGTGGAATGAGGAGCGTTTCCCCCGCTATGAATAGCGATGTGGACTTTTTGCCCCGAGCTGGGAAGCTCCCAGTTTCCTTTCCCCTCATTTTATTGACAGCTGCCAACAGCTCTGCATTCTTTTGGTCTGCGTTCATCTAGAGGTGAATTTTTTAGTTCAGCTTTTGGCCGTACCCCTCTccgcatgttttttttttttttttttttttttttcgtttttatcggtaccagggatcgaactcacgact--gcctgcttacaaggcaggcgcttatgccgctgagctaaatccccatcccctcctTCACATGTCTTGAACGTGCACAG---AGGCGCTTATGATGGAACCTTG-CTGCCTTCTCTGGCCCT----CTTCTACCTAATCATTGTCAAGTTTCTTATTTTGTGAACTCTAAATAGTGCTCCCTTTTCCTGTTATACGCTGctggttcttttttaaaaatgccttttcttTTCCCAGGCCTGGAGGAGAAA--CTGTGAAATATGGGCATgaagaggagaaaaggggaaGTCTTTGTCTTTTGAAGGGTATTTTTGAAAGGGGAGGTTAGCGAGGTCGCCACCATATTTTGCGTCT-------TCTCCTCCAGGGCTGCCCAGTATGCGTGCTCCCTTCTTGGCCATGCACTGCAGAGACGTGGGGCCAGT---------------CTTGAGTTACAGAAACAGAT-TCAACAACTG------------GAGGGGCATCTGAGCCTTGGGAGAAAGCGTAAGTGACTGTAACTTTTGTCACTCCAACCT----------TTTTT--------------------CCTTCCCCCATTCTCCCATTGTCCCTCCTTCCTGTTTTTTCTCCTCACGAGTTCTTTTCCCTCACTTGGCTCTGTTCTCATCTTCTGCATGTCTCCAATTATGATAAGAGAGCAGGTATAAGGAAATAATGATTAG--AAGGGAGCAAGTTTGAGGACACTTAAACTGGAGtagaaattagaattttaagtgcagtactgtgggaagctgagacaagagactTGAGTTCAGGCTGGACAACATAGTGATTAacaagaatttgtctcaaaataaaaataaaaattttaaaagggctgggagctgggcatggtgatgcacatgtatgatcccagcagttgggaggctaaggcagaat------tgctgaaagttcaagaccagccaatactacttagcaagactttgtctcaaaaaagcaaaacaaatcaaagccaaaacaaacaaacaacaacaacaaaacaggttggggaggtagctcacttgaagaccttgagttcaatcccagtaccaccaaaaattaaaaataaattttaaaaatttgaagc---aaaaaagaatgaactgtttctactttttttgtttgtttgcttgtgtgtTACTATCACTTGCTTCACTTTCACCTTCttggctttctctttttttgtatcttgctctctgtgtttctg-ctttcatttccttGCATTGTCTTGTGAATCTCCACAAGTTCTGCGCTTGGGCAACTCAGCAGATGCTCTCGAGTCAGCCAAAAGAGCTGTGCACCTATCAGATGTTGTCCTGAGATTCTGCATCACGGTTAGTCACCTCAATCGAGCCTTGTACTTCGCATGTGACAATGTCCTATGGGCTGGAAAGTCTGGACTAGCTCCCCGTGTGGATCAGGAGAAGTGGGCTCAGCGCTCATTCAggtttgttactttttt

a score=14792
s chr3            96636608 397 + 160039680 GGAGGATATGGTTGGCAGAGG-GGTTAGGGAGGCCTGTCCCTTACTCTACGTGTCCTCCCCTCCAGGGCCGCCCAGTATGCCTGTTCCCTTCTCGGCCATGCTTTGCAGAGACATGGGGCTAGTCCCGAGTTACAGAAACAGATTCGACAACTGGAGGGTCATCTGAGCCTCGGACGAAAGTGTAAGTAAAGCAGACCTT-----------CCTCTTATCATCCTCAGCTGGTAGCCCATGGCCTCTCC-TCCCGTTCTGCC--------AGTTC---GCCATCATTTGCCAC--------TCTCCTGCATGCCTCCAGTTGAGGTCAGAGAACAGGTATAAGGAAGTTAGCACTGATTGGAAAAACAC-GGCACGAGAACAC-TAAACTGGCACAAAAAT--GAAT-----------TACGATTGGAAGTTAAGAAAAAGAAC
s HiC_scaffold_1 106133174 436 - 233722169 GAAGGGTATTTTTGAAAGGGGAGGTTAGCGAGGTCGCCACCATATTTTGCGT--CTTCTCCTCCAGGGCTGCCCAGTATGCGTGCTCCCTTCTTGGCCATGCACTGCAGAGACGTGGGGCCAGTCTTGAGTTACAGAAACAGATTCAACAACTGGAGGGGCATCTGAGCCTTGGGAGAAAGCGTAAGTGACTGTAACTTTTGTCACTCCAACCTTTTTTCCTTCCC--CCATTCTCCCATTGTCCCTCCTTCCTGTTTTTTCTCCTCACGAGTTCTTTTCCCTCACTTGGCTCTGTTCTCATCTTCTGCATGTCTCCAATTATGATAAGAGAGCAGGTATAAGGAAAT----AATGATTAGAAGGGAGCAAGTTTGAGGACACTTAAACTGGAGtagaaattagaattttaagtgcagtactgtgggaagctgagacaagagac

a score=180520
s chr3            96643441 7121 + 160039680 [encoded data, 8493 characters]
s HiC_scaffold_1 106141905 7628 - 233722169 [encoded data, 8493 characters]

a score=87837
s chr3            96650970 2011 + 160039680 AGAATTGACTCTGTATCTAGAAAGACTGAGGAAAAAAAGACTTTCAGGAT------------GTGAAAGTATTAACCACTGCCTGGACTTCAGTCCTTATCTCCCTCCCTTGGCTTTATCTAGTTGGCTATGTTCTGTATCAGCTCTGACACCTTACTTCACACAACTAATGTACCCCCATCTTAAACCCAGGTCCTTGGTCACTATCTCCGGCGACAGAGAGACCCCAGCTCTTTTCTTCGGGAAATCAGAGCTATTGCTAGTGATCCAGATGAGCGATTCTTCTTCAATGTCACCGATGAAGCTGCGCTGACAGACATTGTGGATGCACTGGGGGACCGAATTTTTGGTCTTGAAGGTAA-TGAGTATCCTGGCGAAA-----CAGAAGTCCCGGTTGGGGTTCTTCTGGAGT-------GAGTTCAGTAGAGCGAGC------------------------TCCCCTGATAGCACCTTGCAATTTTCTCATGCCCAAGGGTCCCGTGGAGAAAATGAAAGCTCCTTTGGGCTAGAAATGTCTGAGATTGGCTTCTCCATCCACCGACTACAGGTTGGATAGACCCTGACCC-TCTCAACATCCCCCTAGCTCTCCATTCTCTTCATAAGCCCCCTACTTCTAATTCAGATAACTTCAACCCCAAGGCCCTTCCTGATTTCTCCTTTAACTAGCCCACATCCTGACCTTCTATGCCTTTC-----TGACCACAGTGTACCTGTATGTGAGCATCTCACCACAAGAAAGTTCTTTTTCCTCCGATTCCCCACTGTCTTCTCATTGCCCACATCTGGTTCTACTCTTCAGGATGGGATTCTCTTTGGGATGGTGGGGGCCTATGACTGGGGGGGCTCCGTGCTATGGCTTGAAGAAGGTCGCCGCCTTTTCCCACCACAAGCTGCCCTGGAAGATGAGTTCCCCCCTGCGTTGCAGAACCATGCGGCCTACCTGGGTGAGTCACAGAGAGTGGCAGGGAACTGGGAGAGTAGG----GGAGAC------------------------------------CCAGCAAGGGGGTATGAGGCACTCCCCCTTAGCTC-----ATGCACTTTGTCACTCAGCTCCTTAAATCTCTTTAGGCCTCGCCTTATGCCTTCAGGAAACCCT-CCTCTCTGACTTCACCTTCTTCC---TTTACATCACCACCTCTTCATTTTAGGTTACTCTGTTTCCTCCATGCTTCTTCCCGGTGGACGCCGCCTCTTTCTCTCAGGGGCACCGAGGTTTAGACATCGAGGAAAAGTTATCGCCTTCCAGCTAAAGAAAGATGGGGTTGTGAGGGTCGCCCAGAGCCTCCAGGGGGATCAGGTATGACATCAACAGAGGGTGGGACCCTTGGA----CCGCTTcccccacccccacccccacccccacccccCAGGG----ACTGGACAAGAAGGGAAGGCAAGACTGGAAAGCCCGCGCTGAATTCTGGGTAGCAGTCTGTCAGGGATGTAAGGATCAGATTGGCAAATGGGTAAGTGCTTCCTGCTGAGTGCAGCTGTTCACAATCACCTTCCCTTTTCTCTTGGATCCTCACCATCCATCATTCCC-AGATTGGCTCATACTTTGGCAGCGAGCTCTGCCCGTTGGATACAGATAAGGACGGAATAACTAATATCTTACTTGTGGCGGCTCCCATGTTCCTGGGTCCCCAGAACAAGGAGACCGGACGCGTTTATGTGTACATGGTGGGCCAGGTAAGAATCAGTGAGACCCTAAAAGATGTGTGTGGGTGATGGTGAAAGGAAGGGAAGAGGGAGGCACACATATTTGAGAGCTTGCTAAGGGGCAAAGGTCACCAGATAAGCAATGCCTTTTAATCTCTTCTCCATTACAAGCAAAATTTGCTAATGCTCCAAGGAACCCTTCAGCCAGACCGTTCCCAGGATTCTCGGTTTGGCTTTGCCATGGCTGCTCTTCCTGATCTGAACCATGATGGTTTCACTGATGTAGCGGTGGGGGCACCCCTGGAGGATGGACACCGGGGAGCGTTGTACCTGTATCATGGAACCCAGACTGGAATCAGGCCGCATCCTACCCAGGTCAGCAGTTCAGGGATAA
s HiC_scaffold_1 106149525 2019 - 233722169 AGAATTGACTCTAGATCTAGAAGTATTG-GTAAGGGAAGACCTTGAGGACCAAGAATTTAAAATCAGGGCACTA-CTACTTTCTGGACTTAAG-CCATATTCACCTTCCTTTGCTGGGT----TTGGCTATGGTGTATATCAACTCTAACATCTTACTCCATCCATCT--TGGTCTCC-----TGATCTCAGGTTCTTGGTCACTACCTTCGTCGGCATCGAGACCCTAGTTCTTTCCTTCgagaaattagagaaattgcCAGTGATCCAGATGAGCGATTCTTTTTCAATGTCACAGATGAGGCTGCACTGACTGATATTGTTGATGCACTAGGAGACCGGATTTTTGGCCTTGAAGGTAAATGCTAACCATGGAGAAAGGAGGCAGAGG-----GTAAGAGGAATGCTGGAGTATAAGTAGCGTTCTAGAGGGCGATTAATTGCTTAAAGTAGGAACTGTTTTTCCTTGATATTACCTTAATATTTTCTCATACCCAAGGGTCCCATGGAGAAAATGAAAGCTCTTTTGggctagaaatgtctcagattGGTTTTTCTACACATCGGCTAAAGGTTGGACAGACTCCGCCCCCTCCTGACATC----TAGCT-TCTGACCCCTTTAT--GCCTCTCTCC------------AACTTAAATCCCAGGGGCCTTCCAGATTCTTCCTTTAACCAACCTCCATGCTAATCTTCCACTCTTCCCCTAGCTGATTATGGTGTCCCCTCAGG-GATCCTCCCATTCCTAGAATGTTTTCTCTTTG-----TCCCCTCTGTCTTCTCAGTGACC-CATCTGGTTCTGCCCCACAGGATGGAATTCTCTTTGGGATGGTGGGGGCCTATGACTGGGGGGGCTCAGTGCTATGGCTTGAAGAAGGGCATCACCTTTTCCCCCAACGAACAGCTCTGGAAGATGAGTTCCCCCCTGCACTACAGAATCATGCAGCCTACCTGGGTGAGTAGCAAGGAGCTGCTAAGGACTGGAAATGTAGGAAGAGGAAGCACTTTCTGGTATTGGAATCAAACTtaccacctcacacttgccaggaag-atgccgaattctttctaaattcttcatataatttttgttatttg--tcctgggatttcctt----------ctgtgtctTTAGGGAGCTTTTCCTTTCTGAatccattttccttcccttttaca----cAC-------TTATAGGTTACTCTGTTTCCTCCATGCTTTTGCCAAGAGGACGTCGCCTCTTTCTCTCTGGGGCTCCTAGGTTTAGACATCGAGGAAAAGTCATCGCCTTCCAGTTTAAGAAAGATGGGACTGTGAGAGTTGCCCACAGCCTTCAGGGGGAGCAGGTAGGGCGTTAAGGGTAAATGGGACCATTAAGTATCCAGGGTCCTTCAGCCTGA------------------GGGGTGTGAGTGggaaaaggggagagggaggcatgAAACCCCAGTGCTGAATTTTGG-CAG-AGTCTCTCAGGGATATAAGGATCGGGTTGGTGGGCTGGTAAGTGCCTCTTACCAAGTCTACTGGTTCACAATCACCTTCTCTTTTCTCT-GGGTCACTGCTGCCTACCACTCCCCAGATCGGCTCATACTTTGGCAGTGAGCTCTGCCCATTGGATACAGATCGTGATGGAACAACTGATGTCTTACTTGTGGCTGCTCCCATGTTCCTGGGTCCCCAGAACAAGGAGACAGGACGTGTTTATGTATATCGGGTAGGCCAGGTAAGACTTGCTAGGACCTGCTAGGATTTGGG--GGAAATGTGGAATAGAGGGGAGGA---------ACATATTGAAGGGCTTGCTGAGAGATTGGGACTACCAAATAA---ATATCTTCTGTCTTCTTATCTGT-ACCAGCAGTCTTTGCTGATGCTACAAGGAACACTTCAGCCAGAACCCCCACAGGATGCTCGGTTTGGCTTTGCCATGGGTGCTCTTCCTGATCTAAATCAAGATGGTTTTGCTGATGTGGCTGTGGGGGCTCCACTGGAGGATGGACACCAGGGAGCACTGTACCTGTATCATGGAACCCAGAGTGGAGTCATGCCACATCCTGCCCAGGTCAGGAGTGCCCAGATAA

a score=126111
s chr3            96653575 4850 + 160039680 [encoded data, 5690 characters]
s HiC_scaffold_1 106151757 5146 - 233722169 [encoded data, 5690 characters]

a score=74966
s chr3            96661631 3459 + 160039680 tctgaatacacagtgcac----aaaacca--tccctcccgacaGTTTCCCTTCCTCTTTCCCCATCCATTTCCAACAGCATCTTATGGTCTTCGGGGCCCTGGTAACTGTGCCCACGGAACTTCAGCCTTGCTCTTGGGGTTCTATAC--------------------------------------------------TACCAGATGATGGCTCAGTTTAAATGGTTTCCTAACTGCTCATTCCACAGGCCAAGTTCAAGTCTGTGACAGTGGTCAGCACCTTCAAGTTAGGAACTGAGGAGGGCAGTGTCCTACTACTGAATGAAGCCTCCCGCTCGAGTGAGGTAGGGTGGAGCTGGGAAGAGTGGCAATGGGTTGGGAAAAGGATGGCCCTTCTCTCCCTCTTATTTTTCAACTTAGCTTTTAAAATCTATGTGTATTACCTGCAAGCAAGTGAGCCGTGAGTAGAGGTCAGAACCTCTTAGTTCTggatcccccggaactaagatgattttgagtcaccatatgggtgctgggaaccaaacctgcaacctttttgcaagagcaacaagtgcttttagccatggcgccatctctcctacccAACAATGGGATTTTTCAGAGCAAAATTATATCCACTCGACAGTCCACCAGGCAGGGGTCCAACAGTCAGAAGTGGCG---------------GTTCCATGAGTCTTGCTTCTTGCTTCAGT-GTTTTTAAGTAGGAAGAAGTTTTGGTTTTTTGCTTTATTTATTTATTTTTTACTCTATTTag-ggctggctttgttataatgttgactgaggctga----gttaaagggcagacataaaacacaggtcaggggtggtgatgcctgcctgtaattcaagtactggggagctgagagaggaggcttgccatgagctgaaggctggcctgggacatgaaataaaaatgcctcaaacacaagcaaaCAAACCAAGCCACAAAAAGCCACCTCAAAAGCCAAGCAAGAAAAGACAAAACAAACTCTCCTTGCTATGCAGAGTCACTTGGAGGTGATTCAGACCCACCCGACCCTCATCTCCCTGTGGATCCTCGTTGGCAGTGTCCTGGGGGGGCTGCTCCTGCTTGCTCTCCTTGTCTTCTGCCTGTGGAAGGTAAGGCCAGCATCTTATTCTGTTGGAAAGAAAGGACAGGCTCTGTGTTAGTTAGG-----------------------------------------------------------------------------ATGGGGCTA-----------------------------------GGGGGC----------------------------------TGCCATGTTCAGCTCTCCTTGACTCTGTCCCACAAATGATGGTTGAATCAACCTAAGCCAAATAAAATAAATCTGAATCTCATTTTTGGAAACAGAACAGAAGCGAAGACCTCAGATAAG--CGAGGGCTATTGGCAAGGCCCCCAGCCGGGACATCTGGCAATGACTGGTATCTTTTCCTCTATAGCTTGGCTTCTTTACCCGTAAGAAAATCCCCAAAGAAGAAGAAAGTGAGGAGAAGTTGGAGCAGTGACTGACTGACTGCAGGAGGCTC--AGAAGCCCACTTTGGCAGCCTTTTCAAGAGACTCTGTATCCAAA-GGAGGCTTGGAGGCTCAAAGGG---GAAAAGATGCTGCCAGCATGTGTCTCCAGGCCTGCAGCCTGACTTGACTTTTGAGCCATGGCGATGCTTCTGGCAAGAGATGAAGCTTTGCCTTAGCTGAGAAGGGCTGGCACCAAAACACATAATATCCTCACCCTGTGCGTCCCCCTTCCCGACG--GCTTCCACAGCTAGCACAGGTTCTTTGTTTTGGA--CCCTATCTTCCCCATTACCAGGAGTCAAATGA--TTTTGCT------CCCGACTCTCCTTGCAGATTCCCTT--TGTCCCCCTC--TCAATTCCAAA--AAGAAGGTTATCCTCCGccccgcccccccccccccccccccGCACACGCGTACACACTCTCTCACCTTCCTGCCTGCTCCCCACTCCACAGGAGAGAGCTGACGTTGGCTTAAAAGAAGTAAAAGTCAACATCTGCTGCTTTCCCGTGGAGTCCTGTGATTCATAGATCTGGGTGGGGAGAGTCAACAGGAAAAAAGGAGGGAGGAGAAAAAGCCACAAGAGACATTCTGTACAATTCCAGGGCACAGAGAATCCTTCAGACCGGCAACTGCCAG-CCGGCTGAAACCTGAGACTTCAC-------AGTACTC-CGCCCTCAGGTGCTAGGGAAACCCAGCTGCCCCCAGGCTCTCCGGGCTGAGGCATCCCAACCCTCATCCTTCTCTGGGAGCAAGGCCAGGACTTGATGCTAAAATTTCCGGAGCCAGAGGCCCCCAAGTGGTTCAAGCTGGGATAGCAGGGGAG---------CTTGGTGACAATTTTCTCCATT------------TACTCTTCGGGGCTTTCGTAACTGAAA--GCTTCACGGTGGCAGGAAGAAG----------------------------CCCTTTCACCGCACCAGGTTTGGGTAACAACAGCCCCCTGAGATAGATCCAAACAAGCGGGAATCTGCATCTGGGAGGAAGCCTACATGGTTGGCATCAGGTGTCTGGAGAGTAAGCACCTTCTTGCCCAGTGTTGGCGCTATAGCGGTGATAG--CCTGGGAAGACCATTCTGAG---ACTCCTGTCATGTGCTGTAGG-TGTCTCTGCTGCAGTGAGTTTTTCAGCCCTTTCTTGATCACCTTTTCTGGAAATTGC-------------GTGTTGACTAAACCCTCTCCCTTTTGTCCTATGTTTTGGTT--------CATGGGTAAGTGTAATTCTCATAGTAACGGGGAAACTCGTTGTTTATTGTAATTAAGACTTTTGAACAGCAAAGACAGTTTCTGATCTCCATAGTTTAGCTCTGA---------------CAGAGGCCCTCTTAGACTGTGATGAGAGGAAA--TCTGATTGAGCAGTTGACCAGCAGCCAGAGAACCGGTCTTCCCAGGCTGTTCTGA---GTCTGCTTGCAATGTTTATTTTGG--TGTCTCTGGTCTTCTGCAGAGAGTC--CCTCCTGGGGACTGT-------------CATGGTGAGCAA--------ATGGTCAGAACAAATAAAATCCAGTTATCAAATGACTTCTGGCTCTGTTTGAGTTTCCTGGGATATAGAGTGCCCATGGATAGT----------------GTTTGCAGCattttaatacagcaac--atggctgccctgaaaaggatcgcatccaaagaccttctagatccctgtgatctggatggaatactgacatgccttactcccaggagacagaggcaagcaggtctctaagttcaaggctagtct----------------agtataga--gtaagtcccaggtaaagaa------aagttaagatc-caggcatggtggtacacaccttt-------------aatcccagcactcggcaggcagaggatgcagatctctgagttctgtttagtcaagtcagtgagtgcagttcatttgaattgggaatccagtgagttgagaggcaggtca----------gtttgtagaattcagaggtggtttttggttgtttgtttgtttggttgg---ttggttggttgg----------------------------ttttttttcaagacagggtttctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcctggaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcatgcaccac-caccacccggc
s HiC_scaffold_1 106158300 3355 - 233722169 TCTGGCCAGACAGTATatttgaaagaccaaatattttccATCTATTACCCATTTTCT---ACCAGTAGTCTTCAGCGTTTTCTTCTGATCTTGAAAATCCTGGAAGTTTTGCC-ACTTAGCCTGAACTTTGTTCTTGGgttccaagacaaaaaaaaaaaaaatccaaaaaacaaaaacaaaaaccaacaaacagaaACCATCTGATGGTggcttattttaaatatctttctatCCATTTGTTCCACAGGCTAAGTTTAAGTCTCTGACGGTGGTCAGCACCTTTGAGCTGGGAACTGAGGAAAATAGTGTCCTCCAGCTGACTGAAGCCACTCGCTGGAGTGAGGTAGGGCTG-GCGGCTAAGTGTGA----GAGCTGTGAAAATAATGTC------------------------------------------------------------ATGGGAG----------------------------------------GGGACTAAGGGCACTT---------------GTG-----------------Aacttttttccaa----aacaaatgcTTCT--------------------------------------------------------------------CTATTAGGCAGCAGTTGGTGAGTCAGAAGTGTCATATGAACATGCTAGAGTTCCACT-GTCTCCATTCCTCCTCCAGTTGCCATTGAATAGAAAGAAGGTCT--------------------------TTATTCTGTTTGGAGGCTGGCTTTGCTATAACGT-GAGTGAAGCTAACTAGGTTAAAAAGCAG-----------------------------------TGTGA--------------------------------------------------------------------------------------------------------------------AAAAGC---------------------AACTCTTCTCCCCA--CAGAGTCTCCTGGAGGTGATTCAGACTCACCCTATCCCCATCTCCCTGTGGATCCTCATTGGGAGTATCCTTGGGGGGCTGCTCCTGCTTGCTCTTCTTGTTTTCTGCTTGTGGAAGGTAAGCCC-------TACTTTAGTGGAAGCAGGGAACACTGTGTCTACTAttcagaatttcctttctttttcggGGAAAGGCAGTGCTGaatatcaaactcaggacctcacacatgctgtCAAAGGGTCtgccatggagctacatccccagtccaagGGATCCTTGATTATAGCAAGGGGAGCATACCTCATGCCTGGTGGCTAAGCAGGCTGAGGGTGTCATGCCCAGATCTCCTC--CTGTATTCCACAAGTGCTAGTTGAATTAAACTaagccaaataaaataaattcgaGTCCTA-TTTTGGAATCAGAATAAAAGTGAAGACCTCAGATAAGTCTGAGGGCTATTGGCAAGGTCCCCAGTCTGGGCATTTGGCAGTGACTCTTATCTCTCCCTCTATAGCTTGGCTTCTTTACCCGTAAGAAAATCcctgaggaagaaaaaa-----gagaagttgGAGGAATGAATG-----CAGAATAAGGCTCTAGAAAGGTCTCTCTGGCAGCTTCTTCAAGAGACT-TGTGTCAGAGTGGAGGCTCAAGGGCCCGGTGGGATTGAGAAGAAGCCTCTGGACTGTCTTCTCGGACTCACAGCCTGACTTGACTTTTGAGTCATGGGGATGCTGCTGGCAAGAGATGAGGCTTTGCCTCAGACAAGAAGGGCTGGCACCAAAATCAGGAACG--CTCACCCTGTACA----------CGATGCTGATTCCACAGTCAACATGGGGTCTGTGTTTGGGGATCCCTGCTTTCCCTATACCCAGGAATCAAAAGAATGTTTGCTTAGGTCCCTGACTCTT----CAGAGTCCCTTGCTGTCTTTCTTCACCATTTGCAAATGATGAAGATTATCTGCCTCCATTC-------------------------AGTACCAACTCTGTCACCTCCCAGCCTGCTCCCCACTCCACAGGAGGGAGCTGATGTTGGCTTGGAAGAAGT-AAAGTCAACATCTGCTGCTTTCCTGTGGAGCTGAGTGATTCATAGAGCTGGATGGATAGAGTCAACaggaaaaaaggagggaggaggaaaagccACAAGAGACATTCTGTACAATTCCAAGGAACAGAGGAGCCTTTAGACAAGCAACTGCCATCCCCTCTGAAACCTGAGACGAGACTTGGTGGCGCACTCGCCTCCTCAGGTGCTAGGGAAACAGAGCGG-CCCCAGGCTTGCTGGGTGAGAATTTCCCCACCCTCAGCCTTCCCTAGCAGCAAAACTAGGGCTGCACGTCTGCTTTTCTGGAGACAGGGGCCCCCGGGTGGCTAAGACTGGAATAGCAGAGGAGACTGCATACCCTAGGCAGTGTTTCCTCTGCTTTTCTCAGATGGTTCTCTTCAAGCCTC-----AGTGGGACTGCCTTTGGAAggcagagggaaggaaaaggattCTGTGTTAGGGTGGAAAACCCTTCCATCTTTCCAGCTTTGGGAAGCAGCAGCCCCATG----CAATCCAAACAAGTGGGA--CTGCATT----GAAAAGCGAAAGTGGGCAGCATGAAGTTCCTGGAGAGCAAGACTCTACTT-CCCAGCATTTGTTTTATAGCACAAATAACTCCTAGGAAAACATTTCTGTGGCAACTTTGGTCATATTTTGTAGGATGTCTCTGTCAGAATCAGTTCGGTAACCCTTACTTGGT---ATTTACTGGAAATCACCATGGTAATTTCTGTCTCTAACATACCCTGTCC---TCATCCCATAGTATGGTTGTGGCTAGTAAAGACAAGTG-GATTCTCATAGACATCTCAAAACTTATGTGTTTTTGTGATCAAGA-TTTTGGATGCCAAAGTCAGTTACCATTTTCCAGAGTGCAGCTTTGATAACCATTTAAAGATCAGCACCCATTTCTACCTGAGA-AAAAGGAaacgcctgattggacagttcactAGCAGCCACAGAACTTGTCCTCCCAGGCTGTTCTTAAAGGGCTAGCCACAGTGTTTACTTTGGCATGTCTGTGGCCTTCTGAAGAGGGCCAACCTCTTGGGCATTGTCTCTGTTTCCCAGCACTGTGAACAATATATCAGGTGGTCAGAACAAATAAAGGTCAGT--TCAAAT-ACTTCTGGCCGTCTTTGAGTTCCTGAGGGTATAGCATGCTCAGCACTAGTAAGAGGTAAATTCTTAGTTTGC------CTGAGACATTACCTAATGGAGTCACTGAAAGG---------CAAAG-------------TTATGaagtattttgaatatttgc---tCAGACTCTCCCACCACAGATGTGCTCTGACCTCC---TGCAAGTCTTACCCCCTTAAGTGATCATAGAGTGTAAACTGTAGTTTTGAGGAGCACAAAGGCCTAAGTTGAAATCTCAGGTCTGCTGATTATTACCTATATGGTCTTGAGCAAATCATAATATCCCAGAGGCACAGATAACAG-----TAACTACTA--TGGTTAGG--AAAGAAGACAGAT-------------------GTGGGTTTAAATCTAGGCCATACCACTTCTATTTG-----TCCTGAGACAGATTTAACTTG--TGCTTGTTATggaggcacttgtgccgctgagctatattccccccCACCACCgccctcttttctttttgagacaga--ttctcaatatagttcaggctggctttgaactctctatgtagcccaggctggcctcaaattcgta-----gcctacctcagcctcctgagtgctaggattacagtcatgcgCGACACACTGCCcagc

a score=19201
s chr3            96666485 514 + 160039680 TTTCTTTGTGTCCATTAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGA
s HiC_scaffold_1 214914755 493 - 233722169 ttttttttcatctactATGCTGTGGGTTCATAGGGAATAGATTTAGGTATTTCAGGCTTCTTTCCATCAATTCTGACAACATGTGCTTCACTGAGCAGATCAGACTGGTGCATCTGTTGAACCCAGGTAAGTTCCTCTTGGattttctaccttttattttaattttgctttatgtGTTTCAAGTAACTATTTTGACTCCT--AGTGCTTCACATGATAAATATACACATTTAGTCACCTGGCAAATATCTTGCCCTTAATCTGATGGTTTACAACAATG---------TGCTG-------CTATAGAGGCTTCCAGTTTTGC-ACATTAATATTTATAGGgactttctttttgaacagtatCTATTCCCTTAATCTCTAAATTATCGCCTTTCTTGTAGATTCACATATATGTGAACAGAGGAAAAACCTCATATTTCCTAAAAGGCTTAGAAGACACAATCAA--TAGCTCTCTTTACCCTCTTCATGTGTGTCATTTTGGCAGGTTACCAGA

a score=30304
s chr3            96666499 522 + 160039680 TTAGGCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTG----GGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTT-CCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGGCTGCGGCGGCCGAAAG
s HiC_scaffold_1 215432005 523 - 233722169 ttaTGCTGTGAATTTATAGTGAATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAG-AACCAATCCCTTGATGTCTACGATATCACTCT--TTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAAAG

a score=19345
s chr3            96666503 488 + 160039680 GCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAA---------------------------------------------------------------------------------------------------------------------------------------------------------TATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAG
s HiC_scaffold_1 181453998 615 - 233722169 gccctgATTTCTTG-GGAGTGCAGTCCAGCAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAGGGCGGGCTGGTGCTTTAGTTGAACCCAGG---------------CTTCCTTCTTTTTCAGATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGCAAGTGTCTTACCCTTTACTTGCTTGTTTCCAGCTGTGCCAGCGGCATGCTGGGTAACACTGGACACTCTTCCTGTTTTGCCATGGTGACATTTGTGTGACATTCTTTTTTGCACAG-------TCCCTTGATGTCTACAAAATCACTCTTTttggtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtggtaccaggaatcgaactcacgacctcaagcttgccaggcaggcgcttgtgctgctgagctaaactgcTGTCACCCTGTTTGTAGAATTGCATGTCTGTGGCCAAGGGGACAAC-CCATGATT--TAAAAGGCCTAGAGAACACACGCCAGGTTCCCCTCCTCTTTGCCTTTGTGTTCATCATTTTGGCAAG

a score=29813
s chr3            96666503 536 + 160039680 GCCATGAATTCTTATGGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCTTGTAGATTCCCATGTGTGTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGGCTGCGGCGGCCGAAAGCCAAAAATAT-TTTGTTAT
s HiC_scaffold_1 172799160 536 - 233722169 GCCATAAATTCAAAGGGAATGCATTCCAAGAGCCCTGGCTCCTTCCCACTGGGT-TCACAAAGCTTGCTTCTCTGGGAGGGGCCTGCTGGTGCTTCCGTTGAACCCAGGTACCTTTCTCTTTGGCTTTCTTCTTTTTCGGATCCTTTTCCTTCACATGTTCCAGGAAGCTGTCACGACTCCTTAAATGTTTAATGTGTCCAATACACACATTAATCCTTGTGGCGAGTACCTTGCTCTTAACCTGCTTGTTTACAGCAGTGCCAACAGGAGGCTGGGTAACCCTGGAGACTCTTCCTGTTTGGCCACGGTGACATTTGTGGTACATTTCTCTTTGCACACTACCCATCCCCTTGACATCTACAACATCACCCTTTTTGTAGATTCGCATGTCTGTGGTCAAAGGAACAGCCCTGTGTTTTCTAAAAGGCCTAAACAACATACACCAGGgtcccctcctctttccctttgtcTTCATCATTTTGGCAAATTACTGGAAGATGGTGGTTCTGGCCAAAAGGCAAAAGTTTGTTTGTTGT

a score=29454
s chr3           96666518 493 + 160039680 GGAATGGGCTCCAACAGCTCAGGCTCTTTTCCATTAGTCCTCACAAAGTGTGCTTCTCTGGGTGGCGCAGGCTGGCGCTTCAGCTGCACCCAGGTGCCCTTCTCTTTGGCTTCCTTTTTCTTCTGGTCGTTCTCCTTCACCTGCTTCGGGAAGCTGTCTCTGCTCTTTGAGTGCTTGATATGCTCAGTCTGCTCATTGATCCTCTTGGCCAGAATTTTGCCCTTAACCTGTTTGTTGAAAATGATGCCCACGGCATGCTGGGTGACACTGTAGACTCTTCCGGTTTTGCCGTGGTAGCACTTATGGGGCATTCCTTTTTGAACAGTGCCCATTCCCTTGATGTCTACAATATCACCCTTCT-TGTAGATTCCCATGTGT--GTGGCCAAAGGAACAACGCCATGTTTCCTAAAAGGCCTAGAGAACATGT-ACCAGGTGCCTCTCCTCTTTCCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGA---TGGCTGCGG
s HiC_scaffold_1 59695643 494 - 233722169 GGAAAAGGTTCTGACAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAACGCT--GAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACTTGTTTACTG----TAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgtTTGTCATTTTGGCAAATTACTGGAAGACAGTGGTTGCAG

a score=11163
s chr3           96666843 162 + 160039680 TGCCCATTCCCTTGATGTCTACAATA-TCACCCTTCTTGTAGATTCCCATGTGTGTGG-CCAAAGGAACAACGCCATGTTTCCTAAAA-GGCCTAGAGAACATGTACCAGGTGCCTCTCCTCTTT-CCCTTTGTGTTTGTCATTTTGGCAAGTTACTGGAAGATGG
s HiC_scaffold_1 52692592 166 - 233722169 TACCCATTCCCTTGATGTCTACAAAAATCACCCTTTTTGTAGATTCGCATGTATGTGGGCCAAAGGAACAACTCCATGTTTTCTAAAAAGGCCTAGAGAACGTATACTGGGTTCCCCTCCTCTTTTCCCTTTGTGTTCGTCATTTTGGCGAATTACTGGAAAATGG

a score=51123
s chr3            96669737 2308 + 160039680 CTCTCCCCTTGCTGCTTTCTAAGATCTGCGTTAGTGATCGGCTTGA--------TCCTTTGAGTTTTGTCCAACCTCTGGTTGCAGTGGGTCACAAATCACCCATTGGTGATCAAGTC--TGCTTAGTG---------CATCACGTTTCCAAACT-----CTATAGAAGATCTTG-----GGGC------------GTTGGGAGGGAGGGGATGAAGCACACACAG----------GTCATGGCTATGACTAAGAGTCATTA--ACTGGTAAAAGAGGTTGGTGACATCGAAGCTTGTGGAG----------------------GTCCTTGAG-------AGGGGGCG-----GGGGCGGAACTGGGGGTGGAGCTCCAAGCAGAAAGACGGGGGACTTAGGGCCTGGAAGTCGCTGGTGCGGAGGCTGCGAGCATCCCTCTTGGATTCG-----------GTAGGTAACTACAG----GGGGCGGGCTTCGG-CTGAAGGGCGGAACTTGAGAGCCAGCCAGGGTGGCCGCAAAAGACTGCGGGCTTTTTGCCTCTGCAGGGACGGGGTTAGGCAGGGCCAGAGGCGGGGTTTTAAGCCCAGCCTTCAGTTGAACGTCTACGATTGAGCGGGGTGGGATCTGGGGCGGGG-----CTTGGGGCGGGACCCAGTCTGCTTTTTGACAGCTGTCTTTCGGCACAGCCGTAGCCGAGTT-----GGGTTAGGAACTTGTGGCCCGGCTCTCT--GCGCGTCCCCGTCCCCCCGT-------------GGCCCTAGCCCCGGCCATGAAGCGCATCTTCTCCTGCTCCAGTTCACAAGTGGCGGTAGGTGCCAAATGTGTGGGAGAA--GGGCTGTGGCTGGGATTCAAGCCCTGTGTTGACAGAAGTCCTGAGTCCCATCTCCATGGATGATCGCATTAACCCTGCCTGCATCAGTCTTTCCTGCGATGTTAGCAGTTCTGATAATGCGGTCGCCAGCCCTGGTAACTGAACTTATGGGTGTTATTAAAACCCTGTCCCTTAATCT-------TTTCCTTCCCAAGGTGCTTCCCCTTGGCTCCTTTTCCCAACATATTTG-GCTTCCAGCTTCTGGTATGCTTTCTAAAGTTCTGTTCTCTTCCAATGACCCTGGTCTCTACTTCAGCTGCGGCTCCCAGTACCAACCCACCTCCAGACATCTGCCCGCCCCCACCCCAGCCTTTAAATCCGTTCCTACTTCTATCCCTAATTCCTGCCCTATAGCTTCACTTC-CATCCTTGCCTTCTCACAACGTTCT--CTCTCACATAGCTCCATTTTTACTCTTTGCTTTCTGCCCCTAACAGTATTTTCTGCCCCCAAAGTATTCTCACCCCAGTGCCTTCTTCCAACCCTTCTTCACAGCCTCCTTTACCAAACTTGCCTC--TTCCACTCCATGACACTGCCTCTTC-------CACTCT-----CTCAAGCACCAATCCAAATCTCTTTCCA---AGCGTCTGTCCAACATGGGGCCTCTGTTTTCTTAATTTCCAGTGACCTTTT----CCTCAATATTACTTCCTCTACCTTTTGCCTGGACCTCCT---GCCTGCTTACAGTGGCTTAACCTTGCAACCTAGCTAGCCAGACAAACGCTGTCAGAGGACAGACAAGTCTCCTGGCTGATCCCCAAGAGCCTGGGTGAGTTGCCTGCAGAATTTACCCTGGCCAGTTCTCTGTACTGTCTAGTCTTCAGACTGGTTCTTGGGACCAATCAAG---TTCTGTCTGGTTCTCCCC------CCATCCCACCCCACCCCCAATTATTCCTTTGTC---TTGTTTAGCATTTGTGTTC-ATTTTCTTTGATTGAGTTAGGGGAATGAGATGGTGA----AGGAGAAGACAGAGTGGA-TCACAATGAGAGAGTTCCTGACAAGGGTTACTCTCTTCTCCGTTCTCTCCCCTCTAGAGCAAA------------------ACAAAGATTTTGGAAGATGGTGGTTCAGGGAGGATACAG---TTGTCCTTCTCTAAAGAGTTCTTCCGGAGTGGCCCTCTGTGGAGGGAATGGCGTCTTCTGAGGAGGTTGGGGGTATGAGTCCCTTG----------------------GTACTAATATTGCTTAGTTGACGCGTCAT-------TCATTCATAAGCAGATGTGAGAAATGTTTGGTTATCTCACTGTGCCT-GGCAGGCCACAGAAACCTGGCAGAAACCTGTGAAGCAAGAGTAAGAA--CTGTCTAGGCCTGTCTCTGTCCCATTTACATTTGCTTCTGCATGGAGTTTCT--ACACACTGACCAAACAGT--AAGGGCCTTTACTCTTACAGATAACAGAAACTGCGGCTACCTGGGTTCTTAACACACTGGCTTAGCTCTCAGTGATTTTCTAATC-CATGGTCACTTTCCCCTAATTATGGAAAGTTCCCAGAATTGTTCTCCCTTTCAGATTTATGGAGTCTGTTTC--TCTTTAGGA--GGGGGACTATTTCATTCtttgttgttgttt
s HiC_scaffold_1 106161907 2383 - 233722169 cttttccttttctaattcC--AGGTTTCCTTAAGACATTGACCCAAATCCCCTTTCCCTCGGGTTTTGTCC----CCATGTGGCAGCGGGTCT-----------TTCCTGCTCAGTTCCTTGCTTAGCGATACACTCTCCTCGTATTTGCAAACTGTTCTCTTTAAATCCTCTTGTGCTTGGGTTTTTGGCGAAAGGCTGGAGGTGGGGAGAAGAGGCCGAGGTAACTGGCTGAATGTCTGGGTTATAATAAAGAATCGTCATCCCCGGGTAAAGCAGCTGGGAAGCCCGACGCCCTCGGAGCTGCCAGCCTGGTCCGCCCCGCATCCCGCAGCGCAGTTAGGGGGCGTGGCCGGGGCGAGCTCGGAGGCGGAGTCACCTCCGGAGCGGCAGAGG---CGGGGCCAGCGAGACGTTACTGCTGTTGCTTCCCGGGTTCCTTCTCGGTTGGAGGAGGTCGGGGCGGGTAGGTGCAGAGTTGGGGTGGGCTCAGATCTGGATAGCCGGACTTGAGGCCGAGCCCGCGTCGCAGCTG--GATTGCGGGGTTTTCGCCTCTGCAGGG--GGCGCTCGACCGGTCC-----CCGGGTTCC--------------------CGCCTCTGACTGAGCGGGGCGGGAGCGGGAGCGGGGGCGGGCCCGGGGCGGGGCC--GTCTGGCTTTTGACAGCTGTTTCTCG-CACTGCCGCAGCTGAGTTCGGTGGGTTTAGGAACTTGTAGCCTGGCTCTCTCCGCACGTCCCCGTGCCCCCCctggccccggccccggccccggccccggccatGAAGCGCTTCTTCTCCTGCTCCAGTTCACAAGTGGCGGTAGGTGCCAAAAATGTGGGAGAATGGGGCTG-----GGGGTGCAAGCCCTATGTTGACAG-AGCCGTAAGTCCC-CATCTAGGCACCAGCGCCTCATC----TCTTCACCGGTCTTTTTAGAGCT----TCCGCTCCCGCAGTGCAGCTGCCAGCCCTGCTAACTTAACTTGGCGGCGTCATCCGTACCCTGTCCCCCAGCTTGATTTGCCTGCCTTCCTAACATCTACCCTCTCTGAGATCTTTGCTTTCGGCCCTGCACTCCTTACTTCTGG--TGTTTCCGGCAGCCCTGTGCCCTTCCTAAG-TCCTTTTCTCCATT---ACTGTATCTTCCCAAACCGAACCACCTACAAGCATCTGCCTGCCCACCTCTTGGC-------TCCATT-CTACCCCTCCCCCAAATTCCTGCCCCA-AGCTACATTTCTCAACCCTGTCCTGT-GCTCTGATCTAGCCCTCCCGTGGCCCCATCCTTACTGTTTCCTGTC--ATCCTAAC------------------AGTAATCTCAGTTCTGTGCCCCCTC---AACTTTATACATAGCTCCCTCTGCC---CTTGTCTCCATCTCAGCCCGCGCCACTACCACTCCTCAGCGGCACCATTGAACTTCAAGCATCGCTCCAAGCCTCTTTCCACTCAGTGCCCCCTCAGCCGCATCCTTGTGTTCTCTTCAATCTCTGCCCCACTTTGACCACCCAATCCCACTT-TGCTTCCTTTTG-CTGGGCCTCCTTGCGTCTGCTTACTGTGGGTTAATCTTGCAGTCTAGCCAGCCTGACAAGCACTGCCAGAGGACG---------CGTGGTTGCCTGCCAAGGGATCGGGTGAGTTGCCTGCGGAATCCGCCCT-GCCAGTTCACTGCAGTGTCTGGTCATCATA-TGGTCTT--GGACCAGTCAGGACATTGTGCCTGTTTCTCTCCAGTGTTTTCTTTTACCCTAACCC-----------TTGACCAGTTGTTTAGGACATGtattctgtttcctttgattggGTTTTAGAAAAGTGATGGTGAAATGAGAGAAGGATGGAGTGGACTTACCATGAGAGTTCCCTGCAGAAGTATTACTTTTTTCcccagaagaaaacataaagaaaaaagaaaacataagaaaaatcacAGAAGTTACAGAAGGTGGTGGTGCAGGGAGGGTATAGAGTGTCTCCTTGTCTAAAAATTTCTTACTGAAAGACACCCTATCT-GGGGATGGAATTTTCTATGGAGATGTGGATTATGGATCATTTAGAAATGAATTAACCAGATGTATGTAGTAATATTGTTTAAGTAACTCAGCTTAGTGATGTCATTTATAATTGAATATGAG-CATTTTCAGT----TCACCCTGCATGGGCAGGCCACAGAAACCTGGAAGAAAGCTATGAAGCAAGCGTAGGAACTCTGTTGAGGCCTGTCCCTGtcccatttatattt-cttct------agtTTCTCCACACACTGATCCACTACTTGAAACACATTTACT-----------AAGAAACAAAGGCTAGCCAG---------ACCCTCTCTTAA-TCAGAATGATTTTTTATTCATATGAACTCTTG-CCCTAGACACTGAAAACCCTCAGCATTACCCTTCCTTTCTGGTTTGTGGAGTCTGCCACCTTCTTTAGGAATGGGGAACTACTTCATTCTTCTTGATTCTCT

a score=11405
s chr3            96673476 413 + 160039680 GACATAGACCA-----AGAGACAGG-CTGGTAAATAGCTTTGAAGCTTTGGCACCAGCTCAGCATAGAGGAATTTCTG------TTGCATTTAAAGTGTTAATCACCAGGTCCTCATCCCTCCAAGGCAGGCATTCCATTTCCATCCACCTGATCTTCAGCAGAAGCCACTTGCTCCTCCATGGCCTGTTGGTGTCTTTGTCCTCCCATCTTTGACAGCAAGCCTGTGAGTTCACAGTCAGAGATAGGAGAGGGCACAATTACATCCACACGGGTTCCTTAATCTCATCGGTAGAAATGGCATGGCTTG--TCCTTGTTAGG-GAGTCTGGTGATTAATTTGCTGATTGCTCCCTGGAGGCTGTGCTGCTAATCCAGCGTGTCCTTTCCAGGGTGCTGAGGCAGGTACTAGACTGAGTCCTGGACTTT
s HiC_scaffold_1 106165024 398 - 233722169 GACGTAGGTCAGAAGTAGAAACAGATCAGAAAAATAGCTTGAGACCCTCAGTACTGGATCAATACAGAGAGATATGTGGAGGGACTGCATTTGAAATGTTCAGAGTCAGGTTCTGGATCTTCCAGGGTAGGCTTTCTACTCCCACTTGGCTCTTCTGCAGCATTCACCA--TGCTCTTTCACTACTTGTTGGTTGCTT-------------------GTAGATATGTAA---------CAGAGATAGAAGAGGGTAGAATTACTTCTACAAAGGCCCCCTAATCTCAGCCCTAGACATAACAAAACTTTATCCCTTATTATTTGAGTTTTCTGATTAATTTGGTGATTACTCCCATGGAGTTGTGATGGTAATCCAATACTTGCTTTCCAAGGTGCTAAAGTGGTCAATAGGctggattttgaaattt

a score=43865
s chr3            96673874 2410 + 160039680 TGAGTCCTGGACTTTGGAAGAAGCCCTCCCGTCCTCT--------ACTTTCCAGTGGTTTTATTATGAAGAATTTCTACCTTTTCTATAGTCTCCTTGGTATACCGAGACTGTAGAAAATAAGCCGGGTGGAGTCAGAAGGACCCAGCTGGAAatacatacatacatacatacatacatacatacatacatacatacataTCCACAGTGCTAAAACACAAATT-ACCACCCATCCAGCGTGGCTAGCTCATAGGCTGGTATAACCAAGATCCTTCCAACTCACCAA--GCTGGAGAACTCTAAGCCCGGGAACATCCAAAGTGCACCCAGCAAAGCCAAGGGGGATGAGAATAGGAGCTTCCATTTATCCTGTGTCTACTAAGTAAC-AGACACAAAACTACATGCTTTGTCTGCTCTTAAATCATTAGCGAATTGAGGTCCAAGGACGTTGGTACGTACCTGA----CACAGAGACA--AAGCGTTACTCTGAAGATTGTCGag-------------------------------------cagggcct--------------------------------------------ggtgacacacactta--------ggaccccagc---------------------actctggaggACTTATACGGAGAACAAGGGCAC-------CATAGGAAGAGGGAAGACAGTTTAAGTTTGTGAAGGAGGAGCCCCCCCCCCCAAGGTCAGCTGGTGGCCGCAGTGAGTGGGGGAGGCGTTGGTCCAGCTG----TTTTCCATCAGATGACCTGATTCCCAAGGGGCACTGAAAAATGCCTGTTCTTGCGTGTCCAGACCTGCCGGGCTGTGGAGGAGTCAGTTCGCTTGCTTTGTCATT-GAGAACAAACCTGTTTGGAGACTCTTCCACACACAGGGAGTAACAGCCGAGACTGAGTAGCTTTGCCCTGGAGGCA-TCGCAAACT--TTATCTGGACATAAGTCATCCTTTTCCCATAGCTCTGTAACAGTGTGGTCGGACACAGGAATTCAGCCTGGATGCAAGA-AGCCTGAGCTATTTCTAAAACCAATGCTATTATATTACTTTTTTATGTGATCCCAGACAGATGTTTA---ACATATGTGTGCTTCCTTtttttttccttcgagacagggtttctctgtgtagttctggcagtcctggaactcactctgcagaccaggctggcctcaaattcagaaatccgcctgcctctgcctcccaagtgctggcattaaaggaatgtgccaccacttcccggctTTTTTTTTTTTTTTTTTAATGAATGACACAAGATAATATCTATCATCTCTGACTATTTTGGAGGGCTATTAGAGGT-TAATTG-----------GAAGGACCAGGAGAAGTTACGAGTGTTTTACGGGAGCGTTACCT-CAGAATCCATCTATCCTAGACAATTTTATAGCTTGGACCTTTCAATCTTTCCTGACATGGTGATTAACAATTTGTCCTGGCTATATAAACAGTACTTGAGAATGAATTATTGGGCTTCCACAGACTT---TTTTTTTCACCCTTTGCTATAACCTCTTTCTTGTAGAGATTATGCCTCATAAAGTACATTAGGCCACGCCCTACTTCTCACTACTTCCTGTTTTGTTGTAAGGAtgccatccatttatgtggtct----------------acct-----acattcgcttgtttaata----cattgtggtgaggtggttattactgcctacattttatgtacaaggaaacaggttaaa-gtgtttaatggcttgctctaggtcacgtagctgagagtgtagctgagccag-tctcagactcagTCCAGATGAAGACCCA--------TCTTGAAGACTTTTCTTCCTATCCAACGATCTTTGCATTCTCCTCTTTCTT-CCAGTAGGTTTCCTATCTCTGGTTCAAACCAGGCT-------TTTCTGTGCTTGCAGCCCTAGGTGGCTTTACA--GCTCTCTCTTTTATGCCCTGTAATACTTCAATTATTTTAATTACTCCTCCACCCTCAAAACCTGAGCTGGAAGGTTGGAACAATGTATGCTGAGGCGTGGCTGCAGTCTGGGGCAGCTGCTCCCTGCCAGGGAAACTAGGAGG--------------GGGGGGGAGTCCCTTTCTTTCTGCCTCTTCTTCTGGCAGCCTCCTTAAGCACAGCTAGAAACTGGCCTGCCTG-----TGCTGGTTGTTTCCAGTGATGAGGTCGAGACACTAATGGA-------AGACAACCA-GATGTAGGAAAGCAGAGGCTCTAGGTTACCGCCCACCCCACCCACAATCTGGGACCCAGAGTCAATAGGTAGAGATGGAGTGACTAGGTA----------AGGCTGTGGCTGAAAAGCTGAGTCCTTGATTTACTTCATAAAGGACTAAAGACAAAAGGCAGAGCAGCATgggggatggggggttggggggttgggggttgggggttggggggGGGTTGGCGGGGAGACATTGAGAAGTTCCAAGGACCAATCAGGAGTGTGCAGGTTGGTTTGCTCAGGGAAGACCCAGGAAGCACTAAGGGAGAAAGTCATTGCTAGGGCTGTCCTCAGACTGGACATCTAGCA
s HiC_scaffold_1 106165854 2292 - 233722169 TGGATCTTGGGATTTGAAAATATCCCCCTTGTTCTTTTTCCTGCAGTTGTTCAGAGGttttatcatcaagaaattc--aTTATCCTAAACTCTTCTTCAGATA----GATTATAGGAAGTAAATTAGGTG---------------ATTTTAAACTACCTAC-----------------------CATTAAGAAA-AAGTATCCACATTGCCAAGAAGCACCTTTACTATCTAAATAGCCTG--TTACTCATTCACCGATACGAGCAGGATCTTTTCCTTCCACTCATAGCTGGGGAATTTTGAGCCCAAGAATATCCAAAGTGTGCCCAGAAAAGACTGAAAGGATGGAGGTTGGAACCAAGATTTGTTATGTAGCCACTGTGTTACTGGGTACAGagctaaacattttatatattgttgTATCTTTAG-GAAACAGGTTCAGAGAAGGTTTTTATATGCTTAGTATTCATAAAGGCAGAAAGTGTTAGAATaaagattttgttgttattgtacaATTTTTGAAGTActtgaagactgaacccagggcctcccattgagctgtatctccacctctttttcattttttgagtcaggatctcactaaattacccagattGGACTCCAGCTTGCaattctctttcctcagcctcctagagtgct------gagattacaggcatgcatcaacATACCCAGCTAGAA------TCAAGGTTTTAAAAGAGAA---CTTTAGGCATGGGTCAACTGATAGCACTGCTGTGTGGTGCAAGCAGAGTTCCAGCTTGTTCTTTTCCAATGGGAGACTTGGTTCCTAAGGGACAGTGGAAAGTG--TGTTCTTAGGTGTCAGAGTCTATCAGTATGTAGAGGAGTC-TTTTGGTTATTTTGTCCTTTGAGAATTATCCTGTTTGGAGACTTCTCCACGCA--GGCAGTA-CATCTGAGGGTGGGTGGCTTTGGCCTAGAGGTGGTCTGAGACTGATTATCTGGAAATAAGGAAACATTTTTCCATAGCTTTGTAGTTGTGTGGTCTGGTGTGAGAATTAGGACTGGACATCAGATGGTCTGGA----TCCTAATCCCAATATTACCAT-------TCTTATGTGATCT-----GGATGGTTATGTACTTCAGTGTGCTTCCATTTCTTCTTCATCAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATAGTATC----AGCCCTAACTATTTTCCAGGGATATGAGAGTCCTAATAGAAACAGTACTCGAAAGACATGAGGAA--TACAAGTGTTGTACAGGAGTTTAACCTTCAGCATCTCTCTACTCTAGATAATTTTACGTTTGGTACATTTAAATCTTTCCTG------TTATCAATAATCTGTCCTGGCTCTATAAACA-CATTTGAACATGAATTATTGGGCTTCCACAAACCTCATTTTCCTTCACCTCCTCCTGTAGACTCTTTCTTGTTGAGATTATACCTCATAAAACACAATGTGCCGTCACCAACTTTTCATTACTTCCTGTATTGTTATAAGGATGCCATACATTTCTACGATTTTACAGTTTACAAAGAGATCTtatagacatttatttatttaataatcatAACATGATGAGATAGTTATTCTTACTCACactttagagatgaggaaacaaGTTAGATGTGTTCCATGGATTGCTTTAGGTCACACAACTGAGATTA---CTAACCCGGGTCTCAAACTTAGTCCAGCTGAgaaaataagatgagatcctaaaGATATTTGTActcatcca------tttttcttttcccctccctgACCACCGGGTTTTCTGTACCT---TCAATcctgggtgtttttatttttggttttcaaatCTTGGGTGTTTTCCCATGGCACTGTCTTTCATGCCCTGTAATACTTCAATTATTGTAATTGCTTCTTCCCCTGAAAGACTCCAGCTAAAACGATGGAACAATGTATGCCCAGGTATAGCTATTGTCCGGAACACCTGCTCTCTGCCAGGGAAcctggaagggaggagaggaagaaggagaggagtcc----tcttctgcttcttcctcttcccacctcTTCAAACATAGGCAGG----GGTCTATCTGTTTTTTGGTGCTTGTTTCcatggaggagggaaagagactAGCTAAAGGGCATAGATAAACAtgagacaggaaaaaagaaactgggattCGCATCCCA----------GTTTTAGAGCTGAAAGCCAATAGATAGAGGCAATATGGTTGGGTATTTGGACTTCTACCTGTAACTTGAATCTAGGTGCCCTGAGTT------------ACTAAGGACAAAAAATAGAGCAACAAGGGAGG---------------------------------------------AGGTAGTTAATGAGA---------GCCCAGTCAGGAATGCTTAGGTTGGTTCAGTTTG-------CttcagaacaaaaggaaaagaagttgttGCTATGGTTGTTCTGAGTTTGGAGCTCTAACA

a score=16732
s chr3            96678044 316 + 160039680 TTTATTCTTGCTGGGCATCTAATATCA-----CTTTTCTTTCCCCATACCATTGCTAGCCCCAGTGTTCAC-ATAATCTGTAACTCCCGACTAGGTGGAGAAATGGAACCGACGTGATCAGAAGCTGCTGGAGGCGGTGCAGCGGGGGGACGTGGGACGCGTGGCTGCCTTGGCCTCTAGGAAGTCAGCCCGACCCACCAAACTAGACTCAAATGGCCAGTCCCCGTAAGTAAGTCTTTTTGACCCCA-CCCTGGTATGTGGTTC-------------GAACTTCAGAACAAT-------CAGGCAAGGCCTATAACTTCAGAACCCTATTATTGTTTGAATT
s HiC_scaffold_1 106168484 337 - 233722169 TTTCTCCTTGCTTGGTATCTAATTACCTCCTCCTTTGCTTTCTTCACACCATCTGTATCCTCTCTGTTCGCCATAACCTGTGGCTCTGGACCAGGTGGAGAGATGGAACCGTCATGATCAAAAGCTGCTGGAGGCAGTGCAGCGGGGGGACGTGGGACGTGTGGCTGCCCTGGCCTCTAGGAAATCTGCCCGACCCACCAAGCTAGACTCACATGGCCAGTCCCC----GTAAGTCCTCCTAACCCCATCCCTGGTATGTGTTCCTTTTGAAAGCTCTAAACTCCATTATGATGTAGGACTAGGAAATGCCTGTAACTTCAGAGTCC--TTTTtgttgggatt

a score=67984
s chr3            96678453 2862 + 160039680 CACACTGACTTGAAAAAGATACAAAGCTCATTAAACCAACAGACAACTCATTGCTAAACAAAGTTTCCTCATCGCAAAAGGAGGAGGGGATGTATGCTTGAGAAGTTGGGAATGAAGAAGTCAAGTCTGGGGGCGGGGGGTGTCACGGGGCTAGAGGGAGTGTTCAGGATGAAGATAA---------TGCCTCCTGCC---------------------------AGGCTTCTGTTCGGGTCTGGCTGACTCCAGGAT------------GCTGCA-----GGTTGTGTGTTGGGAGAGGCAGGCTATTATGTGTGCCCTGGACATCCGTGCAACATC--TGAAATACCTTGAGATTTGTAGTTCTCGCTTTTCTGGTAGCATCCTCTGGCTTCGTGGCTGTAGGTCATGGAGACAGGCTTGATCCTCCTTTTAGCAAGGCAGGCTAGGGGAGCCTCCCTCTCTGCTCTTGGAATTGGCTTTGGGTTAGGAAGCAGAGGAAGCA----GGGCTTATTAGAGCTTCCTTTATcagctgtgctggtacctgcttataagttcagaatttgggaggtcaagtcaggaggatcaagcacaggtctatatagtgagactctatctcaaagcaagcaagcaagcaagcaaacaaacaaacatacaaggccaaaataaaaACGTCTAGATTGAAGCTGATCAGAACGACTTAGAATATTAAACATGATTTTAGAAAGGAAAGAACCTCCTGGTCT-TTCATCCTTCTCTGTCTCTTGGCTTTGACCCTGGCAGGTTCCATCTGGCAGCCTCCAAAGGCCTGACAGAGTGTCTGACAATACTGCTTGCAAATGGGGCTGATATCAACAGCAAGAACGAGGACGGTGAGTCAGCCAACCCTGTGCAC---GCCCAGTGTGCTGCAGGTCTGTCTCTGGCTGCAGAGGGGCCACTGCTGGGCCCAGATGCAGGTTCCAGCTGTGGGCCTTTCCTTCTTTGCTCAGTCAGTCTTGGCTAGCC-TCTCTCTTGGGGTTCCCCTCCCTTTAAGCCAGGAACATTTCA-CCCCACTCCCACCT---CCATTAAGGAGGGTACCAGCTGCTCAAGAAACTGGAATTTCTGGCCCGGTGTGGCCCACAGCTTCTTGTCCCTAATCTCCCTCTGATTATCTGTGCGTCTCTTGCTCTCCCTCCCTGTGAGTCATCTGCATTCATGGGGCCAC--ACCCCCCCTCTCTCCTT--TTCTCTTTCCAGGAAGCACTGCCCTTCATTTGGCCACCATCTCCTGTCAGCCACAGTGTGTGAAGGTCTTGCTTCAGGTAAAGGCAGTCCGTTGGTGC---TCCTGTGCAGGCTAGAAAGAAATGCAGCGTGTTCCCAACTTTGTTTTGTAGTAACCAACAATATTG---------------TCTCATTCCAAATAGCGCAGCTGATTGTCACTTATCAACATGCTCACGAACATTTGTTTAGCATCTACTCTGTACTTGTACCATGCTTGATGCTGTCTGTCTCTGGGGGGCAGGCCAGAAAGCAGGGTACCCAAGGACAACTGAGTTCGGCCAGTAGTAGAGCCCATTGCAGAGACTAACCGCTATGTAGAAGAAAATCAGGAATGTTCAAATAAAAATGTGTTTGGTGGGAggggctagtaagagggctcagcaggtagaagaatttgc-tgccaagtctaatgacctgagtcagaacctcagaacccacatgatggaaggagaaa---------------cccggctcctgt-------aagttgtcccctggcctccatgagcatatccacacccctccccaagttaaaaaataaaataaaaCGGGGAAGAGGGTTATAGTGGTGGATAATTTGCA--TCGCCCCATAAGCCACTGAGCACATACTGACTCTTCTACCTTTATTACTCCTGGTCTTTTCCAAAGGCCCTAGTTAGGA---------AGTAGGACTGCGTTTCAAGGCTGC---------------------CCATCACCTGC--------------------------------AGAGAGGGACTGGGCTTGCTTGCCTAGTAGTTAGCTTTCTTCAGAGCTGTGGTCCTCCAGTTCCTTTTCATATTACCATGGAAACTGGCGGCTTGC-------TATGAGGT----------------GCTTCACATCTGCTTCTCTTTGTGGCTATTTACAGCACGGTGCTAATGAAGATGCTGTGGATGCAGAAAATCGCAGTCCATTACACTGGGCAGGTGTGTGCCTGGG-------------GAGC------------AGGATGGGAG------------------------------GTTAGCT-------TTTGTGCGGGAAC-------AACAGATGT-TCTCAGACCTCTTCTTATCCAAATGTCTTTCAATTCT-TCCAGCCTCCTCTGGCTGCGCCTCAAGTGTCCTCCTGCTGTGTGACCACGAAGCCTTCCTGGACGTGCTGGATAATGTGAGTATCAGATGGGCCAATGGGTGGCGTCTCACACCAGGAGGCTGCCGTCTTCTCTGAGTTTGATTGGCCAGATCCT-----------------ATCACCATTCCTCCATCACTCCTCCTTTC-------------------------CTTATCATTT-GGGGAGCTCCTAACTCTCTGAACCACCGTAGTGCTTAACCCCAGAACCAGAGCTTGTTTCAGCAGGGGCGGGGGTTGGGGAAGGAGAGTTGGTGGGGTT----TGAGTCATCAAAT-------GTTTCCCCCCCACACCTTCCCTCAACCTCTGCAGGATGGACGCACACCCCTGATGATTGCATCGCTGGGTGGTCATGCAGCTATCTGCTCACAGCTGTTGCAGAGAGGTGCCCGAGTTAATGTCACAGACAAGGATGACAAGTGAGCCATCTCTATGTCCTCTCC-CAATTCCTGGTTCTTTACCAGT------------CTAGAAAGGAGC-CTTGGGCCCA---GCACACACACTGGAGG-GAGAATAGGCTCCGCCCCGTTCTTCCAGCA-----CTTCTTTTCCAGGGATGTTTCAGAACATCTTTGCCGTGTTTTAAGGGAGCCATGCT-GCATAGATGGTGCCACAAGAGGAATGGCTATGCCTGAGGGTCACTGCTTTAATTTACTAGTTTTCTCTCTCTCTCTT
s HiC_scaffold_1 106169429 2887 - 233722169 cACACTGATGAGAAGAAAGTACA--GCTCATTAAACAAACAGCAGACAAAT-----ATGATAGTTCCTTCATTGCACAAGTAGGAGGGTGTGTATGCTTGGGAAATTAAGAATGAAG----------TGGTAGCCCTGGGAGTTGCAGGGCTAGAGGGAGtgattaaaacaacaataaaaaaaatattgtcCCTTGTTGCCGCTCAAATCAGCTTTCAAATGCATAGCCATCTGCTCTGTTCTGGCTAATTCTTGGTGTGACACTTCCCAGTTGCACCTAGGGTTCTGTGCTCAGAGA--CAGGTAATTA-GTATCCCCTCGACACCCTTGCAATACTGTTTCAATCCCTTGAAACCTGCAGCTCTTCTTTCT-----AGCGTCCTCTGACT--ATCTCTCTAGGCCACAT-----GGCT--ATCTCTTTCTCAGGAAGTCAGGCTAGGGAA-TTTTCCTCTCTGCTTTAAGAACTGGCTTTGGAGAAGGAAGCATAATAAGCAAAGAGGGCTTATTA-------------------------------------------------------------------------------------------AGATTCTCCTTC--------------------------------CATTCA------------------------------------------------------------------------------TCTCCTGGTCTGTTTATCTTTCT--GCCTCTTAACTTTAATCCTGGCAGGTTTCATCTAGCAGCCTCGAAAGGCCTGACAGAGTGTCTGAGTATACTTCTTGCAAATGGGGCTGACATCAACAGCATGAATGAGGATGGTGAGTTA-----CACTGAGTGCTTGACCTAGCCAGCTTGTTGTCCCTTTGCAGCAGCAGGGTGGATGGTGCTGGCTCTGGCTGGAGGTTACAAGTATGGACACTTGGTTTTCTCCTCAGTAAGTCCTGGCCAGGTGTCCCTCGATGGGCTTTCTTCCCTGCAAGCTGGCTATACCTTATCCCCATTCTCAGCTTTACCATT------GGTACTAGGTGCTGGGGGAACAGGAATTTCCGGCCCTGTGTGACTGAGAGCTTCTT-TCTTTAATCTCCCTCTGATTATCTGTGCGTCTCTTGCCTTCCCTCCCTGTGAGTCACCTGTGTGCATGGGGCCACCcacccttcctctctccctctttctctttccaggAAGCACTGCCCTGCATTTGGCCACCATCTCTTGTCAGCCACAGTGTGTCAAGGTCCTGCTGCAGGTAAGAGCAGCCCTTTGATACCACTCCTGCAAAGGGCAGAAATAGGCTCAGCCT-CTCCTAACTTTGAATTATAGTCATAAGCAATAGTTAGCCAAATGTACCGTTTTTGCTCCCAGTAAGAAAGTTGGTTATCATTTATCCACTAATTCAC----ATTTATTTAACAG-------------ACATCATGTTTAATACTGCC-----CTCAAAGGTAG-TCACAAAGTAGAATTGCCAAGGACAATTGGTTTCTGCCATTGGCAGAGACTGCTACAATGATGGGCAG-----TAAGAGGAGAGCAGAGCTGCTTAAATTAAAccaaa-------gtaggggctggggatttagctcagt-ggcataagcacctgccttgcaagcaggcggttgtgagttcgatccctggtac-----tgattaaaaaaaaaaaaattaaaccaaagcCCTACCATCTGTTCTTGAGGAGTTGTAGTCAAGTATC-ATAAAGAGAAATATACAC--------GTAAAATGATGTggacaaattataaataaaactctAAAATTACAAAAGGCACAGTTACCTCAATAAGCCATTGA---CATG-TGGCTGT----CTTTCATTCTTCCCGACTCTTTCCAGATCTCACAATTATTATCATCAAATACCAGCCATGGATTCCAAGATTATTTTCCTTAAcatgtttattttctgtcatcTGATTTTTCTTCAGAACAGAATTCTGTCATCCATAAGGGATGGGCTGGGTTTGCTG----AATAGCTGGCCTCTCCCACAATCACTGTTCTCCCATTCTTCCCCATATTACCATGGAAGTTGGTAGCCCAACTAGGAGTGTGAGATAAGTTGTTGGTGCCAAGCTTCATG-CTGCCTCCCTTTGTGACTATTTGCAGCACGGTGCTAATGAAGATGCTGTGGATAGAGAAAACCGCACTCCACTGCACTGGGCAGGTGTGTGCCAGGGACTGGTGAGAACAGAGCTGCAGGGACTCAAGGGTGGGAGTGGGGAGGGGTGGAAAGGGCATCCAGGGGCGTCTGCTGAGACGGTCAGAGAGGGTGCTGGTCTGAGTGAGTGTCTTTTATACTTCCCCTAACCCAACCATTTCTTAACCCTGTCCAGCTTCTTCTGGCTGTGCCTCAAGTGTGCTCCTGCTGTGTGACCATGAAGCCTTCTTGGATGTGCTAGATAATGTGAGCATCAGATGGTCAGATGGGCAGTGCCCTATAGGGGGAGGTTAACTGCTCTCTTGAGTTTGACTGGCTAAATTCCTTGATCTGAGGTTATGCAGTACTAGTctgccattttttctctttccattcttcTTCAGAGAGAAGTTAAGCTTTATCTTTTTGAAGAGTTTCTAATCTCCTAAAAG---GAATTATTTAGCTCTAAGAAATAGGCTT-TTTCTTGAGGGGTG----TAGAGAGAGGGGAGTTGGTAGGGTTGTGCCAAGTTCCTGGTTCTACTTGGATCCTCATCAATCCCTTCCCACAATCTGTGCAGGATGGACGTACACCCCTGATGATTGCATCGCTGGGTGGTCATGCAGCTATCTGCTCACAGCTCCTGCAGAGAGGTGCCAGGGTTAATGTCTTGGACAAGGATAACAAGTGAGCCCTCCCCATCTTCCCACCTTGATTTCTAGACCCTGGCCAACGTATGAATAGTGCTAGTGAGAGACACATGtgtacatctgtgtgtgtgttgaagGAGAGAGCAAGCTGATTTCTGTGTTCGTGGAAACCTCCTTCCTTCCCAGTGATGTCTTAGAAGGCTTCTGCCCT-CTGCAGGGTCATCTTCCTAGCACAGATGGCCCCAGAAGTGGAATGGATACCTCTGGAGG-CATTGGCTTAATTTACTGGCTTTCAAACTGTCTTCT

a score=24188
s chr3            96681788 924 + 160039680 AGAACTTCAGCATTCTCTAAAGCATATAAAAA-TGGAGCCCTCCCAGAGGTCCC---ACTTTCTGATGCTGCAGTTCCAAGAAACGTCCTGCACTGGGAAAAGTCCTGCTCTGGTCTAAGGCTTTGTCCTTGGCTGGCGTTGGTGTGTTGTTCTGACTCCACTGAGTGA--GGACTTACTCTGTGAGTGGAATTTCTGAAACCATGA---------------GGGGAAGCCGGTGCTCCAGGTTTGTCTCCACCCTCAGATCAGCTTTGATCCTGGCCTGTGAGAAAGGCAGCGCTGAGGTGGCCGAGCTGCTCCTGAGCCATGGAGCGGACGCTGGAGCGGTGGACAGTTTGGGACACAACGCTCTTCATTATGCTTTGCGTACACAAGACAAGGAGCTGTGGAGGCTGTTACAGCAGGCCCTGAACCGGCGGCGGAGAGGCGGTAAAAGTCTTTCTGTGCTCTCAAGAGTCTCTTCAATAGCCAAAGAGTTAAAGATGTTTCTTAGTATCCCACTCTCATGGAGGCTGTCCATCTGAAAGAATGGACCATGGCCTTAGTCAAGGCTTTACAGTGCTGCTGCATTTTGGGAACATGT-GACCCCATGTTTCCATAAACATGGTCACAACATTCCTCAGTGTAGCCTTCATTCATTGCAACTCTGACTATTAATATCTTTCTATTGGTTTTTGTTTGTTTGTTTGttttgtttttgagacagggttttctctaactgtcctgcaactcaactcactttgtagaccagactgttttctttctttttttttttttttttttttgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctcaaactcagaa-----agcctgcctctgcctcccgagtgccgggattaaaggcgtgcgccaccaccggccagactgt-----tttcaaact
s HiC_scaffold_1 106172353 792 - 233722169 agaACCTTGATGCTTTATACAGCAGATAAAAAATGGGGCCCTATTAAttgtttctctgctttctgaTGCTGCAACTCCAAGGAA-----TGAGATTTGAAAAGTTTTGGTTTggtccactgctttgtc------------------attgtcCTCATTCCACTGAGTAAAAGATTTTGCCTCCTGAGAGGAATTTCTGCATCCAGAATTCCCGGATTCTGTGAGGAAAGCCTATACTC-AGGTTTGTCTCCGTCTACAGATCAGCTCTGATTCTCGCCTGTGAGAAAGGCAGTGCAGAGGTGGCTGAACTACTCCTGAGCCATGGAGCAGACGCAGGGGCAGTGGACAGAGAGGGTCATGATGCTCTGCATTATGCTCTGCGTACACGAGACAAAGCACTGTGGAGATTGCTGCGGCAGGCCCTGAACCGGCGGCAGCGAGGAGGTAAAAGCTCTTTTGTAATTTCTCGATTCTCCTCAAtaaccaaagaattaaaaa-------------------------aaggcTTTTT------------------TAGACCTACTCAGG-----ACACTGGGGCAGAAGGTTACAGACTAGTAGgtaatttgtctcaaaa--------taaaaaagaattaaatgtag---------------------------------------tgaggtgatgcatgcctgt----------------------------------------catctcagtactctgggaagccaagacaggagaat---ccttttttctttttcttttttgagataaggtctcattatacagttcggactggccttgggctcacttcgtaacccaggctggtcttgaacttgcaatgatcagcctgcctcagtctcccaagtgctgggattacaggcaggtgccaccac--gcccggctatgAGAATCCCAAACT

a score=122431
s chr3            96682963 2505 + 160039680 TTCTCCTTTGCCCCATGTCTTTTCTTATAGGTCATGGACTGGTTCAACACCCAGATCACCCATCTCAGGTATGACCCCTAAGAGTCTCCCCCTTTTGTTTCTGACTTAGCACCAAGCAATTCCGGTGTA------------------TGTGGGCACCAAGGCATTCTTAGAGAAGCAGGGCC---------------------------------CTTTCAGAGGCTTGTTGAAGAG-ACAGCCTCACATCACTGCTCTTTTT----TAACATAGGCCTCTTCATGTGAGCCTCGGGTGGGATCTCCTCCTAAGAACTCACGGAAAGTGGAGCCTgaggaagagcaggaggaggagggggaggag---CGGTGCTCAGAAGAGTGGAGGTGGAAGTTCGAGGAGGAGCAGAGGAAAGTTCATCAGCTGGAGCAGGAGCTCGTGCGAAAGACAGATGAGTGCAAGGCTCACGCTGCAGCCTTCTCAAGCCTAGAGGAGCAGATTCGAGAGCAAGCGCAAGAACTAGGCCATCTCCTAGTGCAAGAACCGGGAGCTCCAGGAAATCAAGGCCCTGGTCTCCGGCCTGAGGGAGATGGTATGGAGGAGGGTTGTCCCCTGAACCTGCTGGCTGAGCGGATCCAAGAGCTGAAGAAGCAGCAGAAGGCACTGGCTACAATAAACCCAACATTAGTTCCCAAGAGAGCTGAAGAATTAGCCCCGGCTGAGATCCATCATGAAGTACACAGAAAGTCCCAACCA---GAGCAGGGGCTGCCCCAGGGCCCAAGTTCAGAAACCACCGGGAAAGCCACAGGACAGCAACCAAACACCAATGGGGGGCAGAACCTTGGCCTCCAGAACACTGAGCAGGTGTGTGCTGGCCAGAAGGAGAGGACCCCAGCTCCAGGGACTGAAACAGCAGGCACAGTGGGAGAACCAGTGGGCATAGCCATGAATCAGCTCCTCCTACAGCTAAGGGAAGAGCTGGCTGCAGTGTGGCGAGAAAAGGATGCTGCCAGAGGGGCTTTGTCAAGACCAGTTCTGGAGGGAGCCCTGGGGACTCCCAGAGCTGAGGCTGCAGCAGCTGCCTGGGAAAAGATGGAAGCCAGGCTTGAGAGGGTGCTGGTAAGGTTAGATGGAGCAAAGATGGGACTGCATGTGAAACCTGAGGTCCCTGTCCAGGGGTCCAGAGACGGAGCCCCGAAGGCAGTCCCGGGATGCTCTAAAGAGCAGGA---AGAAAAGAAGGCTCTTGGAACCAGAGGAGAGCCCTTAGGGGCCCCTGGAAAAGAACAGGCCTTAGGAGGAGGCCTGGCAAAGGGACAGCTGGAGAAAGAGGTGTCAGCTTTGAGACTGAGCAATAGCAACTTGCTGGAGGAATTGGGAGAGTTGGGGCGCGAGAGACAACGCTTGCAGGGAGAGCTGCAGTCCTTGACCCAGAGGCTACACCGGGAGTTTGTGCCCAAGCCCGAGGCACAGGTCCAGCTACAGCAGTTGCGGAGGAGCGTGGGGATGTTGACAGAGGAACTGGCCATGGAGAAGGAGGCCACAGATAAGCTGCGCAGGCTACTGGCCTCCCAGACTAGCGGCCTCCAAGGACTGTGGAAATGCCTACCCCCAGACCTCGTGGGCAAGGGGAATACACAGAGTACAGCTGCAGAACCCCTGGAGGAGCTGCAGGCCTGCATCAGCACCCTGGTGGATAGGCACCTTGAGGCTCAACGGGTGCTGGCTCGGTTGGAAGAGGAAAACCAGCAGCTGAGGGGATCCTTGGCTCCCTGTGGGGAACCAGAGGCCTCCCTCAAGGTTACAGCATCCCCGCAAGTGGCCGCCCTGGAGGAAGATCTGGGAATGCTAGAGGAAGAGCTACGGGCCGTGCAGGCCACGATGAGTGGGAAGAGCCAGGAGATTTGCAAGCTGAAACAACTGCTCTACCAAGCCACGGAAGAAGTGGCCGAGCTGAGAGCTCGGGAAGCAGCCAGCCTGCGCCAGCACGAGAAGACGCGAGGCTCGCTGGTGGCCCAGGCACAGGCTTGGGGCCAGGAGCTCAAAGTCGTGCTGGAGAAGTACAACACAGCCTGTCGGGAAATGACTCGATTGCGGGACACTGTGGCGGAGGAACGTCGCCGCAGCGAGGACCTGGCGGCTAGGGCGGCGGAGCAGGAGCGCCAGGCTGGCGAGATGCGCGGGCGCTCGGAGCAGTTCGAGAAAACTGCTGAGCTCCTGAAAGAGAAGACAAACCACCTCATCGGGGCTTGCCGGGACAAGGAAGCCAAGGTGAGCACCGAGGTATCCTTGAGAGCATAGCGGGAGCGGAGGTGCT-------------------TTTGCAAGGTTGCAGAACCGAA-----------------GATCAGATTAATAC--AAAACAAAGT-------TCTTGCAAGGACCGCTTTGTGCTCACCTAGGGC-AAGAGGTTTGAGGTTGAGACTGGAGCTGAGGTAGAGTGCAGATAGAAGAAAGAGATAAAAACAAATAACATAGTACAAGAGAGAAGGCAGCGTAGGTACTACAATTTAATATTCAGGGTTCAGAAGTTATGTATGCCCCTAGGGCTACCACCAGGGAACACCGTGGACA
s HiC_scaffold_1 106173996 2504 - 233722169 ttttcatttgccc-ATGTcttttcttacaggtcagaggctGGTTCAACACCCAGATCTTGCATCCCAGGTAAGAATC-TAAGTGTCTCCTT-TTTTGCTTCTGAGTCA-CCTTAGGCTAATTCATTGGAACTATTGCCTCCTAGTTCTTGGGGCATCAAAGTATTTTATAAGAAGGAAGGCTGGGggcgggaaaaaaaaaaaaaaagaaggaaggctcTCTGAAGCTAGCTGAGTAGTGTGGCTTTACTCTACTGTTCTGTTTATATCACCACAGGCCTCTCCATCTGAGCCCCATGTGAGTTCTCTCCCTAAGAGCCCATGGAGAGCAGAGCccgaggaggagcaggaggaagacgAGGATGAAGACCCATGCTCAGAAGAGTGGAGGTGCAAGTATGAAGAAGAGCAGAAGAAAGTCTCTCAGTTGAAACAGGAGCTAGTTCAAAAGACAGAAGAATGCAAAGCACAGGCTGTGGCCTACGTGGGCCTAGAAAACCAGATTCGAGAGCAAGTACAGGAGCTAGGGCTCCTTCTATCCCAAGACCCTAGAGCTCCCGAAGGCCAGGGCTGTAGACTCCGGCCTGTGGGAGATGGCATGGAGCAAGGCTGTCCTCTGGAACTGCTAGCTGAGCATATACAAGAgctgaagaagcagcagcagtCAGCAGCCATAGTCAACGAAAAGG------CCAAGAAGGTCAAGGAGTCAGCCCCAGGAGAGATACAGCATGGAGTTGATGGAACGTCCCAACCACAAGAACAGGGGCTACTCCAGAGCCCAGGGTCTGAGGCTACCAGAAAGGCTACAGAACAGCAGCTGA---CAAGTGGAGGACAGACCCTTC-TCTCCAG--------------TCATACTAGTCAGAAAGAGAGACTTCAAGCCTCAGGAGTTGAACCAGTAGGCACAGC------------------AGCCATGAATCAGCTCCTGCTACAACTAAGGGAGGAACTAGCTGCAGTGTGGCGAGAAAAGGATGCTGCTCGAGGGGCTTTGTCAAGATCAGTCCTAGAGGGAGCCCTGGGGACTCCCCAGGCTGAAGCTGCCGCAGCTGCCTGGGAGAAAATGGAAGCCCGGTTGGAGCAGGTGCTGGTGAGGCTGGATCGTGCAAAGGCAGGACTTCAGGCAAAACCTGAGGTCCCTGACCAGGAGTCCAAGGCAGGAGTCCCAAAGACAGCCCTGGGGTGCATCAAAGAGCATGATGAGGAGAAGAGGGCCCCTGGGACCCGAGGAGAACCTCTAGGGGCCCCTGGA---GAACAGCTCCCAGGAGGAGGTTTGGCAAAAGGACAGCTAGAG---GAGGTGTCAGCATTGAGACTGAGCAACAATAACTTGCTGGAGGAACTAGGGGAGCTGGGTCGAGAGCGGCAGCGATTGCAAGGGGAGCTGCAGTCTCTGAGCCAGCGGCTGCAAAGAGAGTTCGTGCCCAAGCCTGAGGCACAGGTCCAGGTACAGCAGTTGCAGAAGAGTgtggggcagctgactgatgaaCTGGCTATGGAGAAGGAGGCCACTGAGAAGTTGCGCAAGCGCCTGGCTTCCCAGAGCAGTGGCCTCCAGGAGCTGTGGCATTGCCTTCCCCCAGATGTGGTGGGAAAAGCCAGTGCCAGGAACACAGCTGCAGAGCCCCTGGAGGAGCTGCACACTTGTATCAGCATGCTGGTGGACAGGCACCGTGAGGCCCAGCAGGTGCTGGCCCAGCTGGAACAAGAAAACCAGAGTCTGCGGGCATCCCTTTCCCTTGGTGGGGAGCCAGGTACCTTTGCAAAGTTCCCAGCCTCCCCGCAAGTTGCAGCCCTGGAGCAAGACTTGGGAAGATTAGAGGAAGAGCTTCGGGCTGTTCAGGCCACAATGAGTGGAAAGAGCCAGGAGATCACCAAGCTGAAGCAGCTGCTCTATCAAGCCACAGAGGAGGTGGCTGAGCTGAGGGCCCGGGAGGCCGCCAGCCTACGACAGCATGAGAAAACTCGAGGTTCACTGGTGGCCCAGGCACAGGCGTGGGGCCAGGAGCTAAAGGATGTGCTGGAAAAGTACAATACAGCCTGCCGGGAAATGGGTCGACTTCGGGAGGCTGCAGCTGAGGAGCGGCGCCGTAGTGAGGACCTAGCCACCCTAGCTGCCAAGCAGGAGCGCCAGGCCAGTGAGCTCCGCGGACGCTCTGAGCAGTTTGAAAAAACAGCTGAGCTGCTGAAAGGGAAGACAGAGCATCTCATAGAAGCTTGTCGGGACAAGGAGGTCAAGGTGAGAGGCTAGG----------------GCAGCCACGGATGTGTTGCTaaacattgtttttttgtttagcAGTTTGCTAACCCAAATCTCTCAACGTTTAGTTGGTTGAATTTATGCTGCAAATAGAGTATTAATCATTTGCAAGAGCTACACTGTGCTCTGTGGGAGCTGAGAGTCGTGGGATTGAGACTGGAGGTAAGGTA-------------------AGATAAGA-------------------AGAGAAGAGGGCTTGGGCACTAAAATTTAGGACTCAGAGTTCAGAAACAAGGTG----CTCAGGGCAAC--CCCAGTAGCACCATGGCCA

a score=33092
s chr3            96689119 1502 + 160039680 TTCCCTTTTTTTCCGTTTGGCCTTAGATCAAGGAGTTGCTGAAGAAGCTCGAGCAGCTTTCGGAAGAAGTTCTAGAAGTCCGGGGCGAGAATGCCCACCTCGCCCTACAGCTGCAGGTATATTTTGGCCTGCAGGA---TGAATGATGATAGAGAAGAGGGGGTTGCGGAGTGGAAGTGGGGAGTGTCCGG-AGAC----TAGCGGGGGTGGAGG--GGGTGGGGGTGGGGTGGACCAGCGATGGGCCCACAGAGC---------------CAGCCTCAA------GCTCCGTGAGCAGTGAGCGGTGAGCGTGGGAAGGGTAGACATGCAATTTCCAATGGGCGTTCCCTTCCAGGACTCCCAGAAGAACCACGAAGAGATCATCTCCACATACAGGAGTCATCTACTGAATGCTGCTCGGGTGAGCTTGCTGGAGTCTGGGAGGCAGCAGAGGTACAGGGCTGAGGAAGGAATATCACGTCTGTCCCGTCCCTTCTCTTCCCTTTATGTACTTGTCATTCT-------GCCAGGCCCACT-----------------GGACCCCGTGCGCGGTCTCGGGTGTTCATTAAGCAAATCCAGAGAGGCTGTGTGTGAATGGGAG---GAGGAGCCGCTTCTGCTTCTCTTTCTGGCTCCCTAATCCATTGTGAGGGTTTTTCCCTGTCCCCATCATCCCCACCCCGCACCCCCCAGTTTCCTCCGAGGTGACTT--TGCCTTAATCAAGGAAGA----GTGAGTGTGCCTGCTCCTTTCTTAGGGATGATAAGGGGG----TAGAGCTACATTTAGCATTCATGG-TGTGGCccttagagcaatcc-tgagagatggatagcattcccctccttgtgaagatgggaaagcagccatggaagagttaTTTAATAATACAAGTGAGGGCTAGGGGCAGAGCTCATTGACAAGTACTTGCCCTGTTCAGTCACAAGTACCGAAGACCAAAAAATGTGACATGACAGGCCAGCAGAATTAGTTAAGGATTATGTAATTGCAAGAGGTAATGACTGGCATTCTGTTCTCCTACAAAACTGCTCTCTCATCTGCCTCTCCCTATGGGTTTGCACTCCATCATCTTTTA-TATCCTTCCTGCTACCCCCAGGGCTACATGGAACAAGACGTCTACAACATCCTACTTCGAATCCTCAGCATGC---AGGAGTGAGGCAGGCTCACTGTGTGCCCTCAGGGATAAAGGCATTTCTCTTTTGTGAGTTGTGGGTGGAGGCTAAAGAGGGCTGGGGCTATGGAGAAAGGAC-TTGGGGGGAAGGGACACTTATAGAAGGATGGGGTGGCTtttttgtttttgtttttgtttGCCTCTCTGGTGGCTGACACTGGGGAGTCCTGTAGGGCATAGAGCA-TTGAAGTAAAGTTAACTGAAAATATAAAGTGTGGG--TCACTAGGGGGAGTCAGGACCTTGTGAGCAGGTGGCACAAGATTAGTGACTAACGGGATGACTGTGGATAGGACAGACAGTAAAGATGGCTGGAAT-ATTTTCCTAAAGTCTGGGGTACAGAGATGCCAGTTAAGAA
s HiC_scaffold_1 106178601 1385 - 233722169 ttccctttttttccttttggctttaGATCAAGGAGTTGTTGAAGAAGTTGGAACAGCTTTCAGAGGAAGTTCTATCGGTTCGGGGAGAAAATACTCGCCTTGCCCTGCAGCTGCAGGTGTGTTTTGGTCTTCTGGGAAGTGGACACTGCTAGAGAAAAGGG---TGGACAGTGGAAGTGATGGACATTTGGCAGACATTCTGGAAGGTATAGAGGCCAGGCCAGAGTGG-------CTGTGATAGGCCAAGGAAGCTGCTAGTACATCTGACCACTTCACTTTACTGCTCCTCACACCCGGA----TGAATGGGGAGAGGTTAGTTGTGTGACTTTCCATTGTTGCTCACTCCCAGGATTCCCAGAAAAACAAGGAAGAGATCATCACTACCTATAGGAATCATCTACTGAATGCTGCTCAGGTGAGCATGGTGGAGTTTGGGGATGGGCA-AGACATCCAGCTGGGTAGGGGGTGTTGTATTTGGAAC--CCCTTCTCTTTCCTGCACAAACTTGCCACTTCTCAGGGAGCTGGACCAGTTCTAAAATACCAGAGAAAGGACTTC-TGAGAGGTCTCTGGGTCTCTTGAGCTAGATCAAGAGACGCTGTGTATGAATGTGAAACTGGGGAGTGtttgccctcttttttttctgtttcctgaccCACTGT-AAAGTCTTTTCCTGTCCCCTACATCCTTTCTTGG---------GTTTCCTGCAGGGCACCTCAGTGTCCTAACCAGTGAAGAAAACGTGGGTA-GCTTGTTCCTTTAAAACACAGAACAACTGTGGCTCTGGTGCTTTGTTTCACATTCATAATTGTAACCCTCACAGCAACCCTTGAAAAGTAGGCATTATTACCTTCC-TGCAAGGATAGGGAAACAGCCGTGGAAAAGCT-----------------------------------------------------------------AggtattttaaaactaaagttgTAAA----------------------TGAGGACTAC------------AGTAAATAACAGCATTGTA-----CCATAGAACATCTCTAGCACTGGTTAGTTCC-----ATTTCCTATTCTTTATCTCCTGTTGTCTTTCTTGCCGTGTACAGGGCTACATGGAGCAGGATGTGTATAACATCCTACTTCGAATCCTCAGCATGCAGGAGGAGTGAGGCAGCCTTGCTGCGAATCCTGAGGTAACAAG--AATTCTCTGCTGTGAGTTGTGGGCG-------ATGAGGGATGGACCT-TGGGGAAAGGACTTTTGAGAGAAGCAGCTTGTGAAGGGGACtggaatctctttttttttac------------ccCCTCC--------------AGGAGGCCTGTAGAACACAGAACGTTTGAGTTAAGGTCAATTGGGAATATACAACATGAGAATCAGTGGGCAGAGTCAGGAATCCATTAGTAGGTAG---------AGCGAC----------ACTGTGGAATGG--AGACTGGGAAGAGGGCTTGAGTGACTCTCCTAAGTGTGAGGGTAGGGAGATGCTAGCCACGGA

a score=14202
s chr3            96692537 816 + 160039680 GGTTTGGTTCTAGGACAGAAAAATTTG---------ATTTTTCAG----------CTCCCCAACCCTCCTCTAGCCTGGCTACTCCACGAGAAAGAGTTTCTCCAAAATCTGGACCACAGGC--CAGAGACCTGCAAGCAGATCCCTCCCCATCCCTTCCCTCAGCCCGCCCTCTGCTGGGTTAAGCTGGGTCAGACA---------GCAGGGGCTTG-------------CCAGTAGAGTCTGGCTC-----CAAGGAAAGAGGAAAGAAAGACTCTTTACTGTGGGAAACTGGGGCTACACATGGGGCTGTAGGAACTGG-TCCAGAGTTTGGCTGAGGGGGAA---TGCAGCTGAGATACACAGATCAGATCATAGAGAAGGACCAGACTAGCTTTGAGGTT----------CACGG-----------AGAGAAGACTATGGTGAA--GCGGAAACTGCTGGGGGTGGGGGGTGGGGT--------------GGAGGACGGCACTGAAAGGGTTCAAGA-ATTTCTCTTAAGAGGAATAGAATATTTCCCCCCTTCCTCTCAGTCACTAGAGATTATCAAGAATCGGTGCATTCGTTATATTC------------GGAAGTATTGGT--GGGAAAACCAAGAAAATGCAGAGAGAAAGATCCAGAGAGGGAGAGTCCCACTTGACTAAGTTCAAGTAT--GTCAGGAAGTAGTTTTGGTCACGAAAAGCAG----------------------GCCTTGAGCTGATCCCAAGATGGC--AGCTA-GAGAGTGGTCAGTGATTCTCACAATGGAGTAGA-------CTGCTC--------CTGACATAACTATACCTGTACAGTCCCCTAAACTGTCAACGTCAAACCCAAAGAGTGATGCT-CCTTGGTTTCATAGTTGCCGTGCCTGCTTGCT-ACCGTAATCCTGATGCTCCTTCTATT
s HiC_scaffold_1 106183744 919 - 233722169 GGTTCTATTCTGGGACTGAAAAAAATGTACATGCCACTTCCGCAggcctctgcctcttcctgcccCTCCTCAAACCAGGCTGCT--AGGTGAGTGAGTTCCTTCAAAATCTGGAAC-CAGCCTTCGGTGGTCCTCACACAGATCCCTCTCCTTGCCTTCTCTCAGCCTGCCCTCTGCTGGGCCCCTTTGGGTTAAACAGCAGCAACCGCAGCAGCCTGTGTTCAGCGAAAACGAGTGGGTTGGGACTTCTGTGCAAATGAAGGGGAAGTAAAG--------TTGGAGGAGGGGGAAACTACACA-GTGGTTGCAGAGACTGGCTCTAGAGTTTGgctaaggagaaaaagaacatctGCAATATGTAGGTCAGATCCTAGAGAAGGTACAGGTCAGCTTTGGTGTTTGTTAAATGGCACAGGCCTGCTTTAAGGcaaaggaaatggagaaaggagGGGACTGATGGAGAAGGAAAGTGGTGCCTGTAGTTGCCAAAGGAGGGC--CATCAAAAGGTCTTGAGCTATTTCTATTAAAGAgaa----------cctctctttctcttccacgCTTGTAGTTAGCAAAGAACACCAAAGGCCTTACATTCCTACATTACACAGAGGGTGTGGGCTGGGGATGGTGAAGAAACTGCAGAGGGGAGGGTCCCAAGAGGGGGAG-ATCATTGGGCTAAACTCAAGAATGAGTCAGGAAATAGCTCTGGTTGTGGAAGCTGGTTCTTTGGCTTTCTCTGGGACTGCTGTAAGCAGATCGCAGGATAGCTGAGCTGTGGGAGTGGTGGGTGAGTTTGCTAACACAGTAGAACCTACCCAGCtccttattttctaaaataatctt--CCTTACAACCTCACAAACT-------CCAAACCC------TGATTTTCccttgatattattttt----ttcccctaagttaactgtaatcccagtgttcC-TCTATT

a score=72033
s chr3            96695198 3083 + 160039680 AAGTACTTAAGCCTAAATTTAGCTTGAGGGGCCCATCATTTCAAACAGCAA--------GCAACAACTCCCTTCCCCAATCCCCAGTGTTAGGAGAGGGTGGTTAT--TTCCCTAGG---AACAAAACC------AGGAAGTAGTCAAGTATAATT------AACAGGCAC-TAGAAATATTG-----TTAGCACTTTATGGCCTGCAGCTTAGGTTGGGGCTCATGGAAAGGATTACACTGAAGGCTTAAACTAAATG---AGATTATTCCTAGTATTTACTAGAGCTTTTTATTATTTTGCATGTTTGTTGTA----CAACTTGCCTCTGATGCCAGACTG--AGCTTTCGAATGGT-TTTAAGCCCTCAGCACCTAGCAATCCCTGATTGCCACTTTAATATTTACCTCCCCCCTTTACAAATATTTACTGGACAAATGACATTATCCCTGAGGCCCCAAACAACTATAAAATGTGGAGTTTTTACGATAACTAGTATAAGGAACAGTGCCTTAAAGTAGCTATCTTTATAGATATAGAAAT-GAACTACTCagccaggcagtggtggctcatgcctttaatcccagcactcgggaggcagagataggtggatttctgagttcgagaccagcctggtctacagagtgagtt------ccaggacagcc-agggctacacagagaaaccctgtctcgaaaaacaaacaaacaaacaaacaaacaaagaaatgaacTACTCAAATCGTCAGGTTAAGTGACCAACTTGGTTGAAACAGGGCCCTTTGGAGGGTCCAAAGCTTTGGAGGAGGAAGTAGGCACTTTAAAGAGGGGCAGAAGTGTGTCT-TCTGTACCTGTATCTCCTTGTGTTCACCAACTGTGGGATCCCTAGTTACTGAAAGCATATTTGGAGGTTGGGAGATAGAGGGTTATCTGTAGGGATTGGGCTGCTTATTTTCCATTT-GTAGCCCAGG--TTTTCCCCCAGATAGATGGAGATCTCATCCTA-----TAACCTTTCTAAACAACCAGAGTCCCAATGCACATAGTCCCAGTCCAGC-CCAGTCCAGGCTCTACACTCCCTCCCGCAAGGGATCAAAGGACTACTCAAACTTTGAATGCCCAGAATCTCTTCTCT-----CCTCAGCGCTCAGAGGAGTTAATAACTCCCGCCCGG---------------------CTCCTG-GGCTCCGCCCCTC--TCCCCTCTCCGAGGTCCTGGCGGGCTTACCCTGGAGGGGGCGGCCCCAGCAGCAACGCTTGGCCGGGCGGAGCTCAGGCCCGGGCGGTGCTGCGGCTGCAGCGTCCAGCTGCCCGACTGAACTCCAGCCGTGCAG----------------CAGACTGCC--------------------------GGAGCTGCGCGAGCCCTTTCTGCACCGGGGCTCACCCCCGCAACTCTGCGGGTAAGTCCTGCTTTCCGCACCCAACTTTGTTGCCTGTCAAGCCTTGAGTCGTATGGCGCTAGCAGGACCTAAGCTTGTAATTGCTG-TGTTCGGGGGAGG----TGAAGAATTCGGAACAGCCGTCTCCAACAGTTCGCAAGTCCCCAACTTCCCCCAAAAAGGACAGGAGAGCATCACTTTCAGAGTTGGCGGGACTCTGGGATTTCGCTAACTAAACTTGCGGCGGAGATCTCCGGGGGACAGGGG-------CTCCAACTTCGCCGCCCCTCCCCCATCCCTCGGAGCTCCGGCAGTTCCGGATACTTTCCCTCCATCTTTCAAGTATCCTTGGCTGCCTAAAAGCCCATCCCTTC-----------------------------------------GGGTCCGCCTTCTCGTCGTTACCCGCAGGGCCCCGAGATCCCCGGGCTGCACACTCCCTGCGGG-----------GCCACCGTGTCTCCCGCCGCCGGGAGACTTGCCCCGGCCATCCGGCTGCAGGAGAAggggc-gaggccggcggcggtccggagcccggcgggcggggccgggaaggggaggtgtagggggccggacggggcggagcaggCGGCCTTTGCGGCCGGCGCTGGGGCGGAGAGTT-TGCGCCGGTCCCTGGGCCTGAGCTCCGGCTCGGGCTGGGGCGCCTGCGATGTCTCAAGATGGCGGAGCTGGGCGAGTTAAAGGTACCGGCCCCCTCCCCCAGCCCCAGCAGGACTCGCTCGGCTGCCCGCTGAGGCGGGGAGGCGACC-AGGCTGGGCGCAGCGGGATGGGGTGGGTGCGGGCGACGTGGCAGGGACTGGCTACAGGGA-TGCGCGGGCAGCGGCCGCG-----AAAAGGGGCTGCGGTggcgccccgggggcggggccgcAGGGCAGATGCAGGGGTGGGGCGGAGGGGGGAATTGTCGCCCCGGAGGGCCGAGGCACAAGGGGCGGGGACGCGGGGCCGTAGCCGCTTTTAGT-----AGTAGGTAGTTGCAGGGTACAGGCGGGCGAGGGAAAGCTCCTCTAGAGGCGTAGGG-GTGAGTCCATCAGGCCAAGAGGTGTGACAGTGAGGGGGAGCCGTAGGGATG------GGACCCGAGGAC---CAGATGTTATC-AAGCTCCCGGGGACCTGAAGCTTAGG---------CTTGGGGCTGCTGTGGGCATCCGAGCCTTGGGCAGTACCGATAGGGGGGCTGAGACGTAAGGGGGCGGGGCTGTACAGGAGCGTACCTTAAGAGATGAGGCAGGAGCATCCTGGAGGCTTAGAGTAAGGAACTGTCCTAATGAGGTC-CTGTGGTTGG--AGAGGTAGAGAAGTGTG-AACCACTGGATAGAAA----AAAAGTTATTG----AGCCAGTGGAGAAATAAAAACAAGTAGGAGGAGCCAAGGATGGAAAGGTAGAGAGAAGGACAAGGTTTTCATCACATTCCTGAAAAGGAGA----------------------------------CCAGGAGGAAAAGAACTTGGGAGAGCTA--ATGGTCCACCCGTGACTAGGTCTTCTAGACATTCACAGAAGGGAGCCCTAGAAGGAGAGAGATCTTGCCCCACCACAACACAGTCTCCAAGGAACCACACCAGAAGATATCCTACAGAACCTTAGACC------TTCATTCCCCCATCTTCTGGCTTCGCCCCATCCTT---------------GTCCCGAGTAAGCCTGAGTTCTAGCCATTGGGC-CATCCACGTTTAAGAGC-----TGACTTCTGTGCTTTGGTTCACAGACCCCATTCTCATTCTCTTGGGGTCTCTGTTGAGAAGTTTGCCTTGGTTC-CCACCCTGGTGGCTATCTATGAATATA---------------CCATGTATGAGAGAAAGAAG
s HiC_scaffold_1 106185770 2990 - 233722169 aaatactta--CCCAAGT--AAGTTCAGAGGCCTACAGGTTCAGACAGCAAAGTATCAGGGAGGAACC------------------TATCAGGAAAGGGTGGCCATCCTTCCCAGGGGAAAACAAAACCCTACAGAGAATTTGGACATGCATATTCTGATTCAACAGGTGCCTAGGAATAGTGGCAGGCTAGCACATTCAGTCTTCTCCCTTACTTTAGGTC----GAGAAGGATCACACTAAAGGTTTAAGCTAAATGGGGAGATTACTATTAGTatttatgaaagtattttatt---ttgcatgctGATTATAAGTTTAACATGTCTCTACTGCTAGACTGTGAGCTCTTGCAAGGCATGTATGTCCTCAATACCTAACGATTCCTAACTAGTGCTCCAGTAT-----------------------------------------------------------------------------------------CTAATATAC-------TACCCTAAAGTTAGTATCTCTATGAATCCAGAAACAGATCTACTC----------------------------------------------------------------------TGAGACCT----------CAAAGTGAGGTAAGGCACCAGGAAGGCCCAGGGCTTTGAAGAAAAG-----------AGAGCAGACAACCCA-CACAGGACCAGAAAAAT--------------------------------------------------------------Cgcaggtgtgtgtgcatgtgtgtgcactc---------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacctcTTCGGATTC-------------ATCCCAGGTGGGATCTTGGTGATAG---TTTTCATGTTTGGGTTAGGTC---CACTTTCCATTTAGCAGCCTTACCCTTTTCCCCTAGGGAGATA-AGGTCTCATTCCAAGAACGAACCTCTTTA--TAGTAAGATCGCTGATCCACACAGTCTTAGCTATGCTCCACTTGAAGCCC--CACTCATCAGCGCGAGGG-TCACAGAGGTAGTGAGGATGGTAGGGTCTAACACCTCGTCTTTGGAGATCCACTCACTCC-AGGAGTTAATCTCTCCAGCTCGGGCTCCCAGTCCCTCCCTCTGCCGCCTGAGGCTccacctcctcttcccctctccgCAGTCCTGGCGGGTTCACCC-GGAGGGGGAGGCCCCAGC-----------------CTGAGCTCTGGGC-GGGCGGAGCTGTGGCTGCAGAGTCCAGCCGCCGGACGGA--TCCTTCAGTGCAGATTGCCGGAACGGTGTCAAGCTGCCTTCCCCACCTTCCCAAACCCACTCTTGGAGCCTCTCGAGCCCGCTCCACACT---------CCCCGCAAAGGTGCTGGTAAGTCTCGGTTTTTGCATTAAACTTTCTTGC-TGCCGAGTTT------GTCTGGTG---GCCGAATCAGTACTTgtaggtggtggtggtggggggggggcgCTGGAGGATCAGGAATAGCTGTCGTGGACTGTTCGTGACTCCATA-CTTCCCT---AAAGTGAATCAGCTCACCCACTCCAGAGTTGGTAGAACTCTAGTTTTTAGCTGGTTAAAGTTGTA----------CAGTTGGACAGAGGGTGTTCGCTCCAACTTCGCCACCCCTCCCCCATGTCTCAGCGATCCAGCAGTTCCCGAGACTTTCCCTCTATCTTCCAAGTACCTTTGACTGTCTAAAAGCTCATCTCCTCCCCATTCCAGGGCAGCAGAGCCCTCCTCCCCTAGGAACCGGGGGCCCGCCCCCTCTCCGTTACCC-CGGGACCCCGCGATCGTTGGGCTGTGCACTCC-TCCGGGTCTAAGCCGTTGCCAACACGCCGCGCACCAGTGGGGG-------CCGG---GCCGGCTGCGGAGGGAGGGGCTGAGGCCGAGGCCTGTCCGGAGCCAGGCGGGCGGGGCCGGGAAGGGGAGGTGTAGGGGGCCGGACGGGGCGGAGCGGGCGGCATTTGCGGCCGGCGCCGTGGTGCAGAGTTGTGCGCCGGTCCCTGGGCCTGAGCTGGGGCTCGGGCTGGGGCGCCTGCGATGTCTCAAGATGGCGGAACTGGGCGAATTAAAGGTATCGGTACCTTCCCCCGTCCCCC-CGGGGCTGAGCCCGCTGCGCACCGAGCCAGGGGAGCGACCAAGACTGCGTGTGGAGGGCTCAGCTGGGCGCGGGAGACGTGGCAGGGACCCGCGGCTGGGACCGGGAGGGAAGTGGCTGCGGGCGTGGAAGAGGCTGCGGCG--GCTCCGGGGGCGGGGCCGCGGGGCAGATGTAGGGGTGGGGCCGA--GGGGAATTGCAGCTGTTGGGGGCCGAGGTGCAGGGGGCGGGGACGC-GGGCGGAGGTCGGGTTTAGCGCCGGGGGAGGTGGT--AAGGGGAGAGCCAGG---GAGAGAGCTGCTGTAGAGACGCGGGGAGCGAGTGGATCAGGCCGAGAGCCACGACAGTAAGGGGAATCTATAGGGATGTAGGCATGGCCTGGGGGTGGGCAAAGGAAGGCGAGGCTCCGTGGGAAGCACAGCTTAGGGAGAGAGGCTTTGGGGCTGTTGGTGGCATCTGAGCCTTGGGACGCACCAGTCGGTGGCCAGA----CAGAGAGGCGGGGCTGTGTGGCCG-ACACCTCGAGGGGTGGGGCAGGAGCATCCTGGAGGCTGAGAGGAAGGTTCTGCCC---CGTGACCGCTGTCTttgggcagaggcagaggagtGTGAAACTGTGGGGTAGAAAGGACGGAAGTTATAGGTAAAGCTAATGGAGAGATAAAGACAAGTTAGACAAGATAAGAATGAGGAGAAAGCCAGAAGAGCAAGTTTTTCATCgcattcctcaaaaaaaaaaaaaaaaaaaaaaaaaggttcaagaCAAAGCTGCCTAAGAGGTGAAGAACTGTGGAGGGTTAGCAAGGTAAACCTGTGACAGAG---TCTGGAGACTCACAGAAGGGACCTCCTTAAGGAGACAGCCCTCCTCCTGTCACCACACAGTCTTGAGGTAACCA---CTGAGGACATCTTACAGAACCTTAAGCCACTGGATTTATTCCCTAGCCtcctggctttgttctgtcttttgaaaCAGAGCCATGATCCTAGGCAGGCTTCAGGTCTAGCCCCTGGACTCAGTCAGCTTTAGAGGCGCTTGTGAC-TCTGTTCCCTGGCCCAGGGTTCCTACCTTCATTCCCCCAGGATCTCTGTTGGGAACTTGGCCCCACCCCGCCCCACTGGGGTATATGGATGGATTGAATCACTTATTTTTTTCCATGTGAGAGAAAAATAGG

a score=284821
s chr3            96698968  9923 + 160039680 [encoded data, 11291 characters]
s HiC_scaffold_1 106188928 10425 - 233722169 [encoded data, 11291 characters]

a score=74514
s chr3            96711970 6338 + 160039680 [encoded data, 7436 characters]
s HiC_scaffold_1 106202274 6437 - 233722169 [encoded data, 7436 characters]

a score=19319
s chr3            96718924 1617 + 160039680 TTTTTAAAAGCTGGATTCTAAGGTGGTCAAACATTTCAGTGCTTAACATTTCCAAGAAATCCTTGCCCCACTGCAAGCAACAAAACCCTCCTTTTCACGCAAGGCACAGGCATCAGAAATCTA--CAAGTCACGTCTAATAACTGCTACAATATCTACG--CCTAGCAGAAAGCTAGCACAGAAATACAAAGCTAAACCAGGCGTGCACACCTCTAAGCTCAGCAGTagtgagttccaggacagccaggggctacacagaaagttcaaaacaaaacaaCTCCTCCCCCCCCCAGAAAGAACCCTGAAGCGTACCTCATTGGAGGACAGCGGCTGAGTATAGGGGGCGCTAGAGGGAGTGGTGATCTCACTCATCCGGAGCATCGTCCGCACGATCTCGCTGCTTGTCTG------AAAAACAGACA---ATTCAGAATATACCTTCACTGCCTCTGGCCCTGGCCCTGAGCCA-GTGGCTACATCTGACATCCATCTCAATGACAGACCTTGTTCCTTGCTGATCACTGGCTGACCCACTTGGATATTACCTGGTCCATTCGGTTTGCCACTGCGCTCACGATTGCTTGGTCACGGAAGTGCTGGTGGAACCTGTCGAGGTTGACTTGCCAATAAATCCCATCGTCTGGTGAGGGCTGGGGAGAGGAGGATAGAGAGGCGGTGAGATGCAGC--------------ACCCGCCATCCCCAGGGTGCTCTGCTTGTTTTGT-----------------------------TTATACAGTAAAGCTCCACTTGTTTTG---TCACACTGTAGCAATTAAATGGGCTAGAGA---AAAGCATT------------------CAAGAGTGTGGATTA---GTGTGTCCCAAGGAAGTCTAACTTCAGGTTCCA---------------------CAAAGTCACCTTCTTCCTTGGTTAATTCTTCTCC-------ATTACTCTCCAATCTCTCATTTGACACCTTCTTTCCTCTAATAGA------------GGCCAG---------AACTCATTTAACTTTGTGTAAATATCTTTACTATCCCCCACTT-------TCCTTCTTC-----CCTCTCTCCAGGAGAACGTTTGTCCTTTTACCTAAGGGCAAGGGCCATGCTGCTGTTTC--------AGATCATGTCGTTCCCCTGGGCCTCAGGATCCAGGCCC---TTTGCTTCCTGTCCTGAGGCTGCAAGGCTCCTGTACTGCTCTGTTCATCAGCTTTTACCCTGCGCAGG----------TCATGACTTCTCCTTCCACCCCATGCTTCCCTGCTTCCTTTCCCTCCTGGCTA--TCTATGCCAGCTCTGGCTTTGCTCAGCCACCTCTCTTA-----------------------------TGAAATTTCAGTTGTTACTGGTATTCCAG-----ACCCACCACTgtcctcaagagcctccttgtggctaagct-------tggaggatacttcccaggcctgatcttatttgactgtttca------gtgacataataggacattttctc-------AATTTAC----CTCCTTAAGTACAGGGACTAAAGCTTTGCGACACACCAGGACTAGCTAAATATCTACTTTTCTTTGTT---------------------------Gttgttgttgtgagaaag-------tctct---ctacatagccct-ggctgtcctggaatgtactatgtagac-----ctcaaattcacagagatcacctgcctctgcctcctgagt-gctggggttaaaggtgcgcaccaccacatccaacCAGAAAGAtttagttttgagtttatgtatctgtgtgattgtgtacttgcatctgcac
s HiC_scaffold_1 106208718 1678 - 233722169 TTTTAAAAAGCTGGATCCTAAGAAA--CAGAACATTCTGTACTAACCACTTGAAGATAATCCTTGCCCCACCTTAAACAACAAAAttcctttttcta---aaagtttaggCCTCA---ACCTAATCCAGGCATA---AAAAATTGTTATaatactcaagaatgtgttagaAAGCTAGCA----------------------------------------------------------------------------------------------------------------------------TGAAACTCACCTCATTGGAAGATAATGGCTGAGTGAAGGGGGCATCAGAGGAAGTAGTAACCTCACTCATCCGAAGCATGGCCCTCACGATCTCGCTGCTTGTCTGGGGTTAAAAAGTAAACAGGAATTCAGAATTCACTGT-GCTGTCTTTAGCCCTTGCCAATAGCTACATAGCTACA-CTGGCAGCAaactgaatgtt----ttcatttcctgatgATCACTGACAAACCCAATGAAATATTACCTGGTCCATCCTGTTTGCAACTGCATTCACAATGGCTTGATCACGGAAGTGTTGATGGAACCTGTCAAGGTTGGTCTGCCAATAAATACCATCGTCTGGAGTGGGCTAAAGAAAAG-TATTACAGAAACATTTAAATACAGTGAAGTTTTCTGGTGAGGAGCTAATTTAATGGTTTACCGTTTCTTttctgacacttttttttttgagatggggtctcgctatgcagtttag----gctggccttgagctcactttgtagc--ccaggtgggtcttgaacttacaacgctcctcccacctcagcctcccaagtgttgggattacaggtgtgagccac-cacgcccgacttttttttttaagcggtaccgaggattgaactcatgatcgcctgcttgcaaggcaggtgcttatgctgctgagctaaatccccagccc---------caatttcttttcttatacaGAGCAACTAAATTGGTCCAGGAAAAAGATAGTTCACTCA--TATAGATCAGTATCTTGATAAATTCCAATTTCAAAGAGTTTTTCTACAACATCTAGTCTCTTGCCTGACCCCTTTCTTTTTACTCTCAGCAGATGCCCTTGC--CTGATTTCATAGAGAAAATCTTGCCTTTTC----ATCCTCAGAGCTCTAGCTCAATTTTCCCTCCTGTC------CTgcaaatctttaatttttcttt-ctcatcagCCTTT--CTTGTTTAAGTATCTTTTATTCTAGAATTTTCCTTTAACCCTATACCTCGCTCATCTTCCTTTGTCATAGCTAAGCTTCTCAGAGAGATGGCCATCCTTAGTTACCTCATCCAGGTCTACTCACCAATTTCCACAATTGTACTGAAATGTCAATTGTTACTGTCATTCCAGTGAAATTCCACTACTGTTCTTGAGGACTTCCTTATtgctaaagtcaaagaatgaagaaTACTTTCCAGTTCTGATC----TTGACTGTTTAAAAGCATATGACACAGCTGGATATTTTTTCTGACGTAAAGTTATGTGGCTTGTTGCTTATTGGATATTATG---------ACATCA-TATTTTCttagtgt-tacttttttttttttttgcaatatggAAGATTGAACACAGCGTTTTTATGATAGGAAAGGGTTCAATCACTAAGCTACATCGTcctcagatatttt------tattttg-agacagggtcttaaatTTAT--GGATCTCCTGCTTCATTCTTTGGAGTAgccaggattataggcaggcaccaTCATGTCTAGCCaca----------ttcatgtatatatatatatatatatatatatatatatacacac

a score=13979
s chr3            96722364 417 + 160039680 GAGACAGCAGGAGCACTCTGTCCTCATTGGTCTGCCCCTGAGCA--ATGGACTGAAGTTCACAATCCTACTGCTTCTTAGC-AAGGGACATTTAGGTTCTGTCTGAGCTTGTTATCTGAGGGCTATTTATGGACCGCTCGCTCTAGGGTGAGGACTGCTAATCAGGAGGCCACATTACCTCCTTGTTATCTGTG---TATCTTGGTTTCTTGGCCTTGGGCTCTCCAGTAGCATCTTCATCAGATGATCTCCTCCTCTTACCTTTTCCTGCCAAATCAAATAAC---TGAACAATTAGACTATATATATCATATGATGGCAGGAAG----CAAAGCTGGTACCCCCTCATCTCAAAGACATCTGCAGCTGCCTGTTTCAGGTGCTGTTTCGGAGGCTGAGGAGCTATAAGAAATCTGAGCCTGTGGCTTC
s HiC_scaffold_1 106212990 399 - 233722169 GAGACAGCTATGAAGCTACCTTCTCACTGGTCTACTCCTGGCCATTATTTAATGAAGTTCATAATCTTACTTTTTCTTAGCTCAAGAACCTCTAAGTTTCTTTGGCAGTGATTATCTGAGTACTCTTTCTGG----CCTGCTTCAAGGTGAGGTTTCCTTATCAAGAAGCCCCATTACCTCTTTGTTATCTGTGGTGCGTTTTGGTTTCTTGGCCTTAGGCTCACCGGCAGCATCTTCATCAGATGATCTTCTCCTTTTACCTTTCCCTGACAAATAAACCAACAGGTGAGC----------TACAAATCCTATGATGACAGGAAATTACCAAACCTGACG------------AAAGATGCTTGTAGTTAA----TTTAGA-ATTGTTTAGAAGACTGATGAGTGACAAAGAGCTTAAATCAATGATGTC

a score=43585
s chr3            96722825 1325 + 160039680 AGATGCCCTGCAATGTCCTGT----------TTGCCTGGTCCTCCCCTCTCCAGCCTTCTCCCATGCTTCTCAGAGCTTTGCTCACCTTGTTGTGACTC----TGACCTTTCACTTTCTCTAATGCTCTATGTCCTTTTCTTACTGCACACTAGTCCT-----AAAAAATACCCATCTTCTGTCACTTCACTGGGTAGTTCCTACTTCTGCTTTAAGACCCAGATCAAATTCCACTTTCTCAGAAAAACAT------AACCCTTC--------ACGCCCTGCACAAATCCAGTCCTTCCTTACATATTTTTGTAATAGCTGGCTCTCCCAGAGTTCTTATCAAGTACATAGCATATCTTTTTTTCTTCCGATGTTATGTACATTGGTGTTTTGCCTGCATGCGTgatggagtcagattccctgggacaggagttacagatgttgtg-agctgccatgtgggtgctggaaattgaacctgggtcctctggaagagcagccagtgctcttaaccactgagccatctcttcagacccTGTATAACATATCTATGTGGCTGATTAATGTCTTCTGGGCAGGGATCATGGCTTTTACATTATTACATACTACAATGACTGGCACACACCAAGGAACTGGTAAACAATCAAGATGTTCATTGACATGAAAATCAGCAAAGAAGAGTCCCCAATTAAGGCAA-ATCAGCTTTAGGATGTAAAGTCCTTACCTATCAAGCTCAGTTTGGGAACTAGGTACATGTCCTTTTCATTAATGACAAGGGTTGGGGCGGGTGGCGGTGGCCCACGGTCAGAACTGTCAGTGTCAGGAACCAGGGGACAGCGCTGTACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTTGATACCTCAGCGTAGTCCATGGTCTTGCCATCTGTAGAACAGGAGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGC----------GGCTAACCGACCTCTGGCTTTGCTAAGAGCT-TAGATCCAGTACTGACCCTCCATGGTCTCTGTGAGTCGGTCGGCTACTTTCTTCACAACAGCTGACATTGTCATTTTGCCATTCAGCAGGAGCTCCTCAACAATCAGCTCTCCGGTGTCACCGTACAGCGTTTTGGTGGTGTAGATGTACCGGGGATACCTAAGCATCCTCAGTACCCGGCTGCACTGGGCTTCATACTCCACCACACCGCGCTTGTGCACATGATAGAGGACCAGGTTGTGGTGAATGAGGACACAAAGGGCTTTTTTCACCTAGATAGGACCCAAAAGAAAGACAGGAGAGACCTGACGCTATATAGCTCCCTACTGCTGGCAACACGGCACACCTCCCAGAGCCTAGTAAGCAACAG
s HiC_scaffold_1 106215180 1189 - 233722169 agatgctgTATAAGGTCTTGTGATCTATCCCCTGCCTG--TCTCCCTTATCTTGTTTTCGCTCTAG-----------TTTGCTCACCTGGATTTGGCCAAGGATGACTTTTCCTGTCCTTGAATGCC----ATTCTTCCCTCACAGTATACTATTTCCTCTGCCAAAAATGCTTATCCTCTATTACCTCATTACGTAACtcct---tttgtttcatattttagttCCAATGCCACTTTTTCAAAGAAACATGTATATAACCCCCTGTATAACAACACCCTACATAAATTAAGTCTCTCATTGTAT-TTTTTGTAACCTCCACACCTCATATCTCTCCAATACGGTACTTAACACA-----------------GATATACATGTCAGTATAT---CTACATGGCT--------------------------AGTTA---ATGTGGTGTATTTTCCAT------------ACTTAGACCTATG-------------------------------------------CTTCAAA------------------------------AGGTCT--------GGGATCGTGGTTTTTTCATTACAATATACCACAATGTATGGCATACAGCAATTACTTGGTTAATAGTCAactgattcattcatttaacaatgaatgaagaaaaatctACAATTAGAGCAATGACAATCATAGGGTCAAAATCTCATACCTATCAAGCTCAGTTTAGGAACCAGGTACATGTCCTTTTCATTAACAACAAGGCTAGGGGCAGGCGGTGGAGGTCCGGTATCTGAATTCTCAGGGGCATGCACCATGGGGCAACGCTGTACAAAGCGTGTGTCTGCCAGTTGCACAAAAGTGTTCGATACCTCAGCATAATCCATTGTCTTGCCATCTGTGGAACAGGAGGAAACATC-AGGTGAGATAGGCTAGGATGGCAGAGTCTAATCCTGTAGCCAGTCAAACTATGCTTTTGCTAACAGCTGTAGATATAGTACTGACCTTCCATGGTGTCTGTGAGTCGGTCTGCTACTTTCTTCACAACAGCTGACATTGTCATTTTGCCATTCAACAGTAGCTCCTCAACAATCAACTCTCCAGTGTCACCATAAAGTGCTTTGGTAGTATAGATGTACCGGGGAAACCTAAGCATGCGTAACACACGGCTGCACTGGGCTTCATACTCAACCACACCACGCTTATGCACTTGATATATCACCAGGTTATGCTGGATAAGGACACAAAGTGCCTTTTTCACCTAGATAGGAcccaaaag---gacagaaaagaccTGGCAATTTA------------GCTGGCAATTTTTT---TATCCAACAGTTTAGTAAGCATCAG

a score=16666
s chr3            96725585  842 + 160039680 ACCAGTAGACTTACTGTGAATAAATGAG-TGTGGCATGGGAACAGCCAAGATGAGCTAGGAA-------CACCACAAGCGGCAGTACACGGGGCCTAAGTACAATACCACACCCCACCCCACCCACTGTGGTACTGACCACAGGGCAGACGGTC-----TCTGTTCATACTTTCTAGGGGAAGGAGTTCTCCTGTCCAAAGGTACTTGAAGGAAATGATTGAAG-AAGTTGAAGAGGAACAGACTCTCTTATCTAAACATACCTGGTCCAGGGATGCTTTTGTGTCGTGGGCAATTACTCTAAGTGGCTGGCTTCCAGTTCTGACTAGGTGGACTCCAATTTTTTCTACAATCTCACCAAAATGCTCTTGCAGCAACAAAGAACACAGTTTAATCTCTGCTTGAGTCATCGTTCTTAG-AGCCTCAGAACTAGGAAAGAACAACAA-------------------------------------------------------------------------------------------------TATAAA--------------------TTCACA---------------------TATTTTTTTTCTAGAGGGCAACTTGACAATATAAATCAA----------ACCCTCTATATATTAA-------------------------------------------------------------------GGCATATATTTGCCTTA----ATATT-------------TATAAGTTGA---GATCCTTT------------------------GTTCCAAGGATGTAGTAAAAACCATGCCATGAGTTCTCTTC---ACAATACTGGCATTGACATAAATAATCTAGCATCTATCAATAAATTATAGTATAACCTT--AAGAGAGTATACTATGCCAACATTTAAAATGACTTCATACAATATAACTACCATAAAA--TATTCCTAATGTGTTGTCATTTAGTAATTGCAATGgtcagatatgatggtgtacactgcctgtaattcttgcacacaggagaccaaagtcaaagaatcaat---agttccaggtcaacctggg-cacaaagtgagttcaaagccagcctg
s HiC_scaffold_1 106216671 1061 - 233722169 attagtatACTTATTGTGAATGAATGAGGTATGGCAGAGGAAGAGCAAAAATTTACTAAGAAgcgtcttttttttaatttttggtat-tggggattgaactcaggacc--------------------tagtgCTTGCTA---GGCATGTACTCATGCTTCTTTGCA-ACTTTCTAGTAACAA---------TATTCAGAGGTAggtaagaaaaattaatgaaacaaattaaagagAACAAGCTGATATTATCTAAACATACCTGATCCAGTGATGTTCCTGTGTCATGGACAATCACTCTGAGTGGCTGGCTGCCAGTTTTGATCAGGTGCACTCCAATTTTTTCTACAATCTCTCCAAAATGCTCTTGTAGCAACAGAGAACACAGTTTAATTTCAGCTTGAGTCATTATACTTGGAAGtctcaaaactagaaaaaaaaaaaaaaagagtggaaattTGCTTTAGTTTgcgtttttgagacaaggtctcattacatagttcaggctggctttgaacttgcggagatcctcctgcttcaggctacaaagtgctggaattacaggtgtgttcaCATCACATCTGACTgtaaatttgtgtattttttctggAAGGTAATTTGTCAATACATATGAAAAGCATTAACATCTTGCATATATTTAACAACTTCACTCTATTTCAagataataacaaaaaatcacactagttctatttattttttggttttctgagacataCTAGCCTTGCaccatgttgtccaggctgggctcaaacttgaggggatcctcttgcctcagtcttgcaagtgctggaactacaggcatgcaGTACCATCCCCGGCACTAGTTCTCTACACTACAGTACTGACATAG---TGAAACGCCTAATAGCTAATGATAAATTACAGTATACCTGTAGAATAAGATACACTAAGCCAGCATTTAAAATGATTTAGTATGATACA-----CACAAAAATTATTCATA-------------CAGTAA--------GACAAGCATAGTGAtataa---gcctgtaatcccagtacataagaggctgaggcaggaggattgctgtcagTTTGAAGCCAGgttgggccacatagtgagttcaaggccaggctg

a score=45446
s chr3            96727057 2583 + 160039680 AATTTTTACATCATG-------AGACACAAGCAGGAATGGGTGTAGTTGATTTTGAAATTACCTCCCTATCACAAGCT----CCAACTCTCTCGAACCTAAATTTTTG--------TCCCTCTTGCCACAGTGTCG----CAGAGAAGACTATTTCACTTAGCCACACACACGTCTTTGGAGAAACATCCTTAGACCAGTTGCCATCCTTG-AATGCATTTC--------------CTGGCTCCTC--TCCCTTCATGCAAGTTTCTGTTCCGGACTTTGTTTCTTGGCCCTGAGTCAGGGCCTCCTCATTCCGGCAGCGTTTTC-ACTAACCTCAGGGTCGGGGCTAATTTAGAAGCTCCAAATGTTGTCCTCCCGAGGCCAGCA--------------GCCTCAGCTCA------TGAGCTT--------CCCATCGCCCCTTCTTAGAAGTAGAGCACCATCCAGGCGGACGCGGAAGGGTCAGAGCACGGGCCGCTCTAGCCGACAGTGTCGGTGGTTTCCGGGGACGCTCTTTCTCTCCTCTCGTTGGGAGGCTGGAGGACCGGCCAGGGGCTGTCTGAGGTGCCGGCGGGCGGGCT------------CTCCTCTGCCTT--------TGGTGCCGG-GAGGCGGGCCTCGGGTCGCGTGGCCGCTGGCGGGCGGGCCTCTCGGGGCCGGGCGGACTCACGTGACCCTTGCGGGCCTCGGAGCGGCGGGCCGCCCAGAGGAGGCGGCGACGGCGGTGGCGACCGCAGCAC-GGGAGGTAGCGGCCTGGGGAGGGACCGCCGGCCGCCCTTTCGGACATCCTCGGCGGAGGCGAAACATGGCGGAGGCCTCGGCGGCGGGGGCGGACGCG---GGCTCCGCTGTCGCCGCACACCGTTTCTTCTGCCACTTTTGTAAGGGCGAGGTCAATCCCAAACTACCGGTAAGAGCCCCGTGTGTCCCGCGCTCCGGCGCCGCGTAGGTCCTTGGCTCCTAGGGCTGGAAACCGGGTCTTAGGCTGCCCGCACACCCGTGATTCCCTTGACACCGGTGTTCTCGGTACCTGCTGCCCGCTGTCTCCGGGCACTGGTCGCAAACCCTGGGCATCAGGGCCAGGGTCCTGCCTATCCCTCATTTCCGCGGCGTCTCCAATCAGCCCCTCATTTCGCTTCCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTTA---ATACCACCCCCATCTTTTTTTGT-CTCCTCGGTGAATTCTC-GGGCAAATCTGCGTCCAATTTGCTCTCAGTCCCCTT--CCTTGTCTTTTCGCGATGACCTATCCC-CTG--------TACTCTTTCCGTTTTTGCGGCTCACCTACTCTTTATTTTTCTTCCCACTTCTCAACCAGATCCTCCCCCCTTCTGCATCCTCAGT---------GAGCCGAAATAGCATATTGCTGAG---GACTTCTTAGTAGGTTTTGTTGAAGTACAGAAAGAG-GAGGTTTGGAAGGTAAC--AGGGAAGAGGGAGATTTTGTTCTTCAGTGGTTTTT-GGGTTCTTGTGAAAGTGAAAATAGCAGTGTACCAATGACTTGCAGACTGC----GCTCCCTGTTGCTATCGAAGGAAAT--------GGCTTTGGGAAGAAGGTAGGACGTACTGTCTCAACTTATTTTGGATATCACGTTGCCAGTGTCTTTAGCTCCACTTTCCTAGCCCACCCCCTCCATTTTTTTTTTTTTTCTGCCCAGGAAAACAAAAAA---AGAACAGAATGTT-GGGACTGCTTTCTCTGATATAAAATTGG-----------CTCTGCCAGGCTGTCAGCCAATAGAGAGGTA--GGGCTATGCTTTAAGAAAAGGTTTCTGCAGCATGCTAGCCAGTGCCAGCGCCCCCAATTATAATAAGCCTTTTT---CTTGTTCGGTGGCGACATT---TCTTAAAAC-GAGTGGCTA--TGTCATAATTTATTTTATAA---TCACAGTATCTTGAA----------TACATGGTGTCTTTCTGTTt-tttgtttgctttttgcacca---------------aagtctc---accatgttgtcctggctgt---cctggaacttgcttattcggatcaggctggcctagagctcacagaggtctgtctgcttctgccttcctaggg--------ttgggattaaaagtg-------tgcaccg----ccattcctggctTTGAA------------------------------------TACACTCTTAAGAGAAGG---------------------------------------------------CCGACTAAG--------------TTTCTGTGTCATAATTAGCTATA-TCTACTGTGGGT-TGGTTTCATTTGCTGC-------CTTTGCTTTATGCTGATGTGCTGTCTGCCATATTTCAACTTGGGAAAG----TTTTTTCCCCCAGCATATATTAGAA-----------CTCACACTCTAGAGAGGGAGTCTGGAATTGAGCCACTGTGTGTGTAAGATCAGTGACATGTTATTGAATGTGATGGATGCCCTGTTTAAAACATTAGC-CCTTGGATCTGTAAGTGTGCACTCAAGGATTTGC--CTTTCAGAGTGAGAAGACATAATGTAAATGTC-----TTTTTCTTTTTCT---TACCTGAAATCTTCACTTCAAAAGGATAATTTGGTTAAGGCTTTTTAGGTATTTTTATAAGACTTAGTTAGACGAATGGATGATCTTTGCTGGTTTGTTTGTTTTTTTAACTCTGACTCATTGCTTGTTAAGCCTGACTTGTAAGTTGAAGCTTATCAGTGTGTAATATAACC--AAAGGCTGCCTGCAAAAGACAGGGTTCTCTACAGGATGCCCTAGCGGTGA-GTGAAAGCAGATGTGGTCTTGATCTTAAGGACTGCAGTT
s HiC_scaffold_1 106218826 2872 - 233722169 aaattttacttCTTGTTAATGTAGACACAAACAGAAACTGATATAGGTGACTAAATGACTATTCCCCTATCATAAGCTGCGGCCAATTTCGCAGATGCCAGTTCtgtgacaccccccccccccaacccctgACTCGGTATTAGTGA-GACGATTTCAATCATCCAC-----TGTTTTTGGAGAAGCATTTTTAGGCCCTCTGCCATTCTCGGAAAGGATTTCTAAGACGCGGTCTCCTGGCTCTTCAGTCCCTTCACGTAGTTTCCTGTTGCGGACGTGCTCTTTTGGCC--GAGTCAGAGCCGCCTCGTTCAGATGTCATTTTCCACTAACCTCAGGGTCAGGGAGAATCCA-AGGTTCCTAACCTACGGCTGCCGCTTTCAGCACATAGATATCGTGCGGCTCGGGTTAACCATCCGCGCCTAAACAGAGTCCACCTCTCTTTCCCGGAAGTAGATAGCTAGCTAGACAGAAGCGGAAGAGGAAATCGGTGTGCCGCTCTACCCCAGAGTTTCGGTGGCTTCCGGGGACGCTCTCTCTTTCTTCtcgctggaaggctggaggactGGCGAGAGCCTATTTGAGTTGCCGGCGGGCGGGCCGAGGCGGGTCGACTTTCCTGTCCTACGTTCTGTGGTGCTGGTAAGACAGGCCGCGT----TGTGGCGGTCCGTGCAGTAGCCTCTTTGGGCCGGGCTTACTCACGTGGCCGACGCGGACTCTGGAGCTGCCCGCCGCACTGAGG-GGTGGAGGCGGAGGCAGCGACCGCTGCCCCGGGAGGTAGCGGCCTGGGA----------GGCTGCCTTCTCGGACAGCAGTGGCGGAGGAGAAAAATGGCGGAGGCTTCGGCGGCTGGGGCGGACGCGAAGGAGGAAGCTGTAGCCGCCCACCGATTTTTCTGCCACTTTTGCAAGGGCGAGGTCAGCCCCAAACTACCGGTAAGAGTCTTGAG----------------------------CTTGG-TCCTGG---------------CTTAGATT-----CTCACC----------------------------------------------CTCCGGTCTCTG-------AACCTGATCTTC---------GCCCCGCCCATTCCCTGTTCCCA---------------------------GCTGCCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTCTTTACTTGTGCcccctttatctttttttgtgcTTCTTAGCGAATTCTCTGGACAACTGTGCCCTCAATTTGATGGCACGCTTCTTCACCTTGTCTCCTGGCCATAATGTCTCCCACCGCACATACCTACACTGTCCTCTGTCGCG-----TCTGCCTTCCATTTCCTTTCCCACTTTTCA-------CCACTTTCACTTTACACCTTTGGTAGAGTTTACGAGGGAAAATAACGGACTGCTGAAATTGGCACTTGTGATGTTTGTCTCTAGCTAAGGAATCAGAGAGGGCTAGAAGGTAATTAATTGGGGAGAAGGATTTTGGTCTAAAGTGATTTCCAGAGATCTTGTGAAAAGGAAAATAGCGGTGTGCTGATGACTTGCAGACTGCCTGTGCTCCCTGTCACTGTTGAAGGAATTCATTTCCGGAATTTGGGAAGAAGGCAGAATGTGTTGTTTGAAA-TACTTTGTGTCTCATGCTGCTGCTGTTTTTAGTGCCACCTCTTATACCCG---------------TTTCTGCACTATTCAGTTAAGCAAAAGGTTCAGGACGCGATGTTAGGAACTGCTTCCTGTGATGTAAAATTGGTTTTCACTTGTTTCTGCCAGACTGTCAGCCAGTAGAGAAGTGGTGGTCTAGTTGTGAAGAAAATGCTTCTGCAGTGTGCTAGCTGGTGCCAGCATCCAAAAC--CCAGAagctgttttgggtttttgaagTATCAAGGTTCAGTCTTAAGATAGGGCGTCTGCCTGTCACATTCACCTCTAACAGTGCCTCAGAATCTGGGAGAAAGCCTACTAAAGCGtgcctttttttttgctttttttcccttagaAACACAAATTGAAAACAGTAAGTccctaaaaaatattttacagccTTTGCACCTACAAGGTGTAtgtttg-----tgcttgtgt-------------gtgtgtgtgtgtttggggtttTGGGgagaggtactggggattgaacctggggcctttgcactgacctacatccccagttctttaattttttattttcaggcaggatcttgctaaatctcTTAAGTTCTTCAGGCAGGGCTTGAATTTGCATTTGCAGGCTTATGACCATCCTGCCCCTGCCTTCCACACCCAGCTAAGACATCTGcagcattttcttccctttttatttgcCTTACTTTAATGTAATCATAGTTTCATCAACTGCTACATGGTTCTGC--TGTGTTTATGTGCTTTATGCCATATTTCAGTGTCTGGACGACCTTGTTTTTTTCCAGCAGACATTAGAACCTCCAGAACTCTCTCAGTACAGATAGAGAATCTGGAGTTCAGCCAGTGTGTGT----GACTGGTGACATG---TTGAATATGATG-------CCATTGTGACCTTAGCTCTTTGGATCTTTAAAATGCTGttcattaatttgctttttttagaGTGAGAAGACTTAGTCAACATTTCCACAGTTTTATTGTATCTTACTACTTGAAATCCTCACTCTAAATGGAT-ATTTGA--AAggcctttttattgtttttctaaacCTTTGTTAGATACCCAGAGAA-----GTTG------TTGCTTTTTTTAGTGTAA-TTATTA--TATCATACCTGACTTATAAA-TGAAGCCTATCACAATTGAATGTAACCATATAAGTACCATTTTACATACAGGGTTCTTTGTGGGATATTGTAGAGATGATATGGAGGAATATGTGGTTC---TTCTAAGAACCTCAGTt

a score=8986
s chr3            96730830 569 + 160039680 atcctcttgcctctgccttactccggtgctgagggtaaaggtgtgtggcactatgcctggcCAGATTTAGTTTTGATTTATGTGGGAGCTAGTGGCTTTGATTTTGTTTCGTGGGCATTTTAAGTCTGTAGTCTCAGGCAGTTATCTTGGAAACGTTTATCAGAAAATACAAGTCAGTTGAGTACAAGTCTGTCTCTGTGATCGGTGAACTGACTCAAACACTGCTGTGATTGGTGAACTGACTCAAACCCTGCTGTGATTGGTGAACTGACTCAAACCCTGCTGTGATTGGTGAACTGACTCAAACCCTGCTGACATGGTCTTCATAGGGT---TACATCTATAG----AGGGCACGTGGGAGGGTTTGAAAAAGATAAATTCTATTGTAGACTTGAA----TCTCATTGCAGGGACCCAGAC-TA-AGTAGGCATGCATAATTCCTTAAATCGGGTGAATGGTGTGGGGAATCTGACTGTCCTT-TGAGGATAAGCAGACTCAATGTATCATGGATACAGTTTCTCATTGTCTTAACTGAGTTCACAACCCTAGTGGATAC-------TGAGAGGACACTGACCCTTG
s HiC_scaffold_1 106224455 462 - 233722169 ATCCTTCTACCTC-ATCTTCCCAGAGTACAGGGGTTATAGGTAtatgccatcatacctggct---tacagttttgatttgtatatgagccagtgagtttcattttgtttcatagcCGTTTC------TCATGACCAGGTCAGTATCTTG----------------------------TTGAGTGCAAACCTGTTTCTG----------------------------------------------------CTCctgaaa-----------aatcaa--------------------------caaatgctAGTAATATGATCTGTATATgatctatatatctatatgtacATAGGACGTTGAAGATTTTTTTAGAGATAATATTTGATGTAACCTTGAAATCCCCTCACTATAAATACCTGAGCATACAGTAGA-ATGCATAGTTTCTTGAATTAGATAAATATTATAGGAAACTTGGCTATCTTTCTGAGAATAGCCAGATCTAGTTTATCATGGATAAAGGTTTTCATTGTCTAGATTAAATTTGCATCTCTAGGGGGTACTGACTCTTGAGATGACAGTTGCCTTTg

a score=10254
s chr3            96742773 239 + 160039680 TTCTTCTCTGATTAATTCTTACCATTTAGCTTTTTAATTTTTTAAAGAAAGTTTGGCTTATTGTCCATCCAACCAGGCTTGAGTCCAGTAATACTTTATCCCGTGACCTGCTTTTCT--CTTTCTTCACAGTGAGGTAAAGGAAGTTAGTTGATTATACCGTCTTGTTTGGGGTCC----TGATGTCAGTGTTCAGTCATGACATGGAATGGAGAAATAAAATGA---ACATTGTGAATGTTACTATT
s HiC_scaffold_1 106235405 246 - 233722169 TTTTTTCTTGATTAATTCTGGTAGTTTAGTCTATTCTTTTCCTTA-GAAAATTTGGCTTCTTGTCCATCTGATCAAGCTTATATCAAGTATCGCTTTGTACTGTGACCTGATTTTCTACCTTGATATGCAGTGAGCTAAAGAAGGTTGTTTGATTATATACTGTTGTTTGAAGTCTCTGATAATGTCAGTGTTCACTCATG-CCTGGAATGAAGGAACAAAGTGATATAGGTTGTGAATGTTGCTATT

a score=75829
s chr3            96754239 4304 + 160039680 [encoded data, 4673 characters]
s HiC_scaffold_1 106251052 4093 - 233722169 [encoded data, 4673 characters]

a score=16028
s chr3            96759353 766 + 160039680 TACAGCTTTTAGGAGCTAAAAGCTGACATATGACCAAAACAATTTTTCAATGTTAAATCCCATAATCAGAATTCCCTTTTATTTTAGAATTATAGTTAAT------------------AAGCCCATAAATCACTG------AATTT--TCCTTTTTTTGAAAATTATCTTAAGATGTAAAT-GTATCTCTCCCCCCAGTCCCCTTGTTGA-TGATGTT---------------ATAGTCAAGAATTGTGTT------AGGAGGTTTCCTTTTGTTCAT-GGCTATGGTTATTGCT-AACATCTA------AGATTTTTAGTCAGTTCTTAAGTACTTTAAGATGAG--TTGATGTGAGCCTGGCTCCAGACAGATCATAT-TTTGAACACTCATTTGTGTTTTCT--TGTTGATAGATTGAGAAGCA----TTGAAAGTCTGTATACTCTGTGTGAGCCTGGCAGTCTTCTCGATGTGAGTCAGCATTTCGCAGGGTGTGCTGTTTGTGGGAGCACAGTCTGTTCCTGATTGCGCATGTGCAGAAGAAACTTCACTTGGTTTTCTTTAAGCATTGGTTCTCTTTTAGAA-ATGGAAATAGATGGATCTGTCAGTTTTGTATGTATGATTCACGAGGAGGAAATGCATTGAGTAAGAAGGAAAGTATATGTGGTCAGCACTCTAACTTTAGTAGGGCTATATCTGACACT-ATGACCTGGGCTA-CCCTTCAGGTACTAATTTTTCAACAGTCATGGTT-GTGAGTTCATGTTCCTTAGCAGTGACAGGCTTTGTAGTAAGGTGTAATCATGCCACATTTTTCCTCAGTAGAGTTTT
s HiC_scaffold_1 106255475 761 - 233722169 TAAAACTGATaggtattaaaag-------------aaaacaa---------gttaaatcaCATAATCAAAATTCCTTTGTGATTCAAGATCACA-TTAATCTTTTCAAGAGGTAGCTGAAGTGCCTAAAGAGCTAGCCAAAAATTTGGTCTTTATTTTG-------------TGTGTAAATTGGATCTGTATTAGCAGTACATTTGAAAAGTGATATTTAATCAGCccataaaattcttaaaagtctTGTTTCatgaaaggtgttttcttttgcaTATCGTCCATGGGCATTTCTTAATATCTAGTTTTAAGTTGTTTTGCTAACTCTGACCTACATTTCTATAAGGATTGATTAGAGTGTAATTCCAGATAGATTATGTCTTTGAACCTCCGTTTTTATATTCTCATTTTGATGAACTGAAAAacagttatttaaattttgttca-gCTTCACAGGCCTGACAGACTTTCAGATTT----CAACGTTTCTCCTCAT-TGCTGATTAT-------CAGCTT--------TTGTGCATATGCTGAAGTAATGTCATTTGATTTT----AAGTATTAATTCTCTTTTAGGACATGGTAATAGGTTGGTCTGTCAGTTTTATAGGTGTGACTCACTAGGAAGAGATGCATTAAG-AAGCAACTAAATATATTTAGTCAGTTTCCTAATTTTAGTAATACTAAATCTGATGTTGATGGCATGGGCTATCCCTTAAGGTGTTAATCTT---GCAGTCATAGCTAGTGACTTCATACTTTTTAGCTATGACAG----------AGGGTGTATTTATGCCCAGTTTTCcttctgtagaatttt

a score=29616
s chr3            96775063  943 + 160039680 acatagtttaaaaaaaccaatcttttaaaaaaGTTAATTTACCT--TGCCTTTT---------TCCCTTTG-CTTACCCAGTCCC-----TCTCCCTCCCATATTAATGATGAAAATG-----TGTACAACAG-AGGCTATCATCAGTCA-TAGCTGCACTGCTTTGGCATAGTTTTGACCCAGCCTGTCTTTGATGCCAGAGTCAAGTCAAAAGATGTATTTTAAAGACATCTATCTCTACTTCATAGTGATGAAGTGTTCTTTA-CAAGTGGAGAAAAACATTTGTTTTGTT-----------GGGAATGCAGATCCAGT--GTGACAAAACATAATGT-ATAACACTGATTTGAACTGGTAGTTATGCTTGGGATGGGTGGCCGTGCTGGCCTTTAGCTCATAGTGTATTTCTGGAGAGGAGACTG--CAAAGGCATGTGGATATGGATATTAGGTAAGTGTTAAGGAAAGGAGCTAGGCATTTGCTCTCTTATT-----ATGTAGAAAATTA---TTTTAAGTTTTTAAAATGT---------------------------GTTTGTTTACAATCAACCAGTACAA---GGGA------------TTGAGCCTCCTACATTCTAGA----------------------------------------------CTAATGTGCTTT---TTTTTCCCCCACTAGCTTTGGGACCATCTGGATCACACAATGTTTTTACAAGATTTTAGACCATTTCTAAGTAGCAATCCACTGGACCAAGATAATAGAGCCAATGAGAGAGGTCACCAAACTCACACTGACTTTTGGGGACCAAGTCGGCCTCCAAGGTTGCCAATGACAAGAAGATACAGGTCTCGCGGAAGTACTCGTCCCGACAGGTCGCCAGCTATCGAAGGGTGAGTTGTTGTTTTGAGTTCTTAAGGGCTGTTTAGATTGT--TACTGGCATAATCCAATCTTTATAAAGTCCTCA-------GACTTTTGTGAACAAGACAGAAATATAAACAGGATGAAAATGAAGCTAAACTGAATGTC-ATACTCAAGAATTATCATTTAAGGATTGGTGA
s HiC_scaffold_1 106276209 1063 - 233722169 atatagataaataaaattgattatttTAAGGCCTTTTTTCCCCAGATACCTTTTGCTTAATGATTCTTCTGTCATACTCAACCCCCTCAGTCTCGC-CCTATTTTagtgataaaaatacagtatgtACCATAGGATGCTTTTAACAGATACTCCCTACACTGCTGTGGCACAACTTTAACATGGCC-ATCTCTGATGCAGGTGCCAAGCCAAGTGAAATATTTTACAGACATCT---------TTGTGGCGAGGATGCCTTTTTAAACAagcatataaatatattcattttatttaaatcttagCAAAAATGTGGTATTATTTTGTGACAAACCACAAAATTATAATATTGTTCTGAATGATTGATTATGGTTAGGACAGAAGTGTATGATA-------------ATTATATTTCTGAAGGGGAAACTGGTCAGAGCCATACAGATATAAAC-----TTAAATGCTAAGGAATAGGGTGAGCCATTCGCTTGCTTACTTCTATATGAAGAAAAtcaattttctcagtttttaacaTTTTCCCCCTATACTTTATGGGCTTTGAAGATTTCTCTCTACTCCCCCCATGAAATTGGGGAAACATATTTATTTTGGAGCTACTGAATTTTAGATACTAAAAAAGTTACTCTTCTCTTCATTATTCCTGTGTTCATTTTCCTAATGTGATTTACTTCTGTTTTTTACCAGCTGTGGGACCATTTGGATCCAACAATGTTCTTCCAAGATTTTAGACCATTTCTGAGTAGCAATCCACTGGACCAAGATAATAGAGCCAATGACAGGGGTCACCAAACTCATACAGACTTCTGGGGACCAAGTCGGCCTCCAAGGCTGCCACTGACTCGGAGATATAGGTCTCGAGGAAGTACTCGTCCTGACAGATCTCCAGCTATTGAAgggtgagttgttttttttttttttttaatgtagtttcAAAGGCTATATGGGTAAAATCTGATCTTTATAAGGCCCTTGTATGTACTATCTTTGTGGGCAAGA-AGGAATGTAGACAGGATAAAAATGAAGCTAAATTGAATATCTATACTCAACTGGTATCAGTTAATGAATGATAA

a score=53456
s chr3            96784378 1880 + 160039680 GTATGGTAGGGCTTGCAGACAGTGTCTTCCTAAAGCCATCTTTCCTG--CAGTTATTTGCGGTTTCTAA-----TATTGCCACAGAAGGACTTTCTGTCCAGTCCTTCCCT-CATCTACTCCACTTTACAGCCTCTGGTAACTTTAGGTGTGGCCTAGCTAGAGCCTGTGCCT--GTCACCCAAGGCACTGCACCAACAGCACCAAGAAAGAAGTCTG-GCCAAGTCCCTTT--GTAAGTGC--TGAGCCACGATTCACAGGAACTGTTGTGACTGCTTTTCTACCAAAAG--TCCTTACTGTGCAGGGC-ACATGCC-GCCTCTTTGAATGAGGGAAGTCTGCTGTAGATTTGGGCCAGCCA------AAACACACTT---TAAAAAA---------------AAAAGCACAGAG---------TGCTGT---------AGCAGC-----------------------------------TAGAGGGTATCACATTTTGT--TCCAGCTAGGGAAGAAATTGTTGAGAATAAAAGCATCTCTCTAAATAATCTGTTTAACTTTTCAAATACAGAGACTTTGCTTGCCTCTGGATTGTAGAGGGCTAGTGACTTG-GAGCTC-------------------------------------------AGAGAGAGCAGTACTCCACTGCTAGATCCACTGTATTCTGGCAGAGAGCCTGGTCAC-CCACCTAATCCTGTCTGTCTCATCTCCCGTATAGGAGCGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGTCAGACAGGCCTTGATGCCATTGTAACCCAGGTGAGGAGCTGTCTTTTTGAGAGGGTGTCTGTTTGATGTGTCTCATGGTTCCACAGACTCCTGCTACTTTCTGAAATGTTAGTCACTCTTCT---CTCACAGATAGTG---TGAGCTTTTGGGTTTCTGTTTTTACTAAGAGGATGGATGGGCTATGGGCATCCA---TAATTTCCATGTTCCTACTAGGCATCCCAGG--ATTTCTAGAGGATGACTTTACCACTGGAAGAAGTAAATACTTTTCCTGTAACAAGAAGTTCATTGTAATTTGTCCTCTTGTTCAGTCCTGTGAA--------AAACAGACATTTCACGGAAGAA--TAGGGTCTCCCGTGTT--AGCAGGGGTTTCTGCCAGACCAAGCAGAGTAGAGGAAGGAAGCAGAGATGAGAGC-TTCCCATGCAGTATAATGCTTCCACTTGTTTATGCTCATTGTTACCTGATTGG-TTTTCATTTTCC-TGTGGACTGTTGAGAATAGAAAGCACGTTGTTTATTTCTAAGTGTTCTCATAGTCAGTAATATATCCATCTCTTGGCTT----TTTGCTGCTTTCCATACTCCCACGCCTTCCT---TCTGACTGAATAAAAATTCTA-ATCAGTTTA-TATTGGTTTTTATT---------AAGTTATAATTTTATCCAGGACATCACAACTCTTTTGGTATCTTAAATGTGCTTTATGCCCAA---------CTTCAGTTACGAGTCTTCCTTATAATCATGACTT-ACACTGGTGTCACTCTGACATTGGAAAGCAGCTCTGAGTGTTCCAGC--CCGGGTAGG---------AGTCCTGCACA-------AGTTAAGAGCAGCGAGCATTCTTAGTGCCT-TACTGTCTGTCCTCAGCTGGAAAGGCTCTCCCCAATTACGGAGCTAATGAGC--ATTGCTGCATCTTCTTT------------TTGTAGCTTCTAGGACAGCTGGAAAACACGGGTCCCCCTCCAGCCGACAAGGAGAAGATCACATCTCTCCCAACAGTTACAGTAACTCAGGAACAAGTCAGTAAGTTTACTTTCATATTTGTTCTGTCTTCCTATGACATCTGATCA----CTCAGTGCATTTCTCTT---------------CTAAAGGCATGGTTCCCTAACATTT-------CTGTCTGACTACCAGCTATGGAGGAC------------------CTAGTTAGCA-----TACCTG----------------CTTTCTAGGTCCCACAAGAAAT----AGGTAGTTGTCTGTACAAAACTTGATTA-TAATTAGTACAAGAACTTACTATTGGAACCAAAACTCACTAAGTGATTAAAAA
s HiC_scaffold_1 106305077 2101 - 233722169 GTAGAGTAGGGTTTAAAGATGGAATTT---------CTTCTTGTATGGACAATTATTTGCTTCTTTTGAAGGGTTCTTTACTCAGAGAGACCT-----CAAGTCCTTCCCCATACTTCCCCCATTTCCCAGCCTTT----ATTTTG----------AACTAGAAACTGGACCTTAGTCATCCAGGGTACTGCACCAAcagcatcaaaataaaagattgtgCCAGGTTCCCTTTCATAATTGCCCTGAGTTACGATTCAGAGAGACTGCTGTGGCTGCTTTTCTACTAGAAAGTTTCTCATTGTTCAGGACCACGGGTCAGCTTCTTGGAGTGAGGGAAGTCTGCTATAGAATTGG-CCAGCCATGAAGGAAAAACTCTTCCTTAAAAAGCAGCTCCATTTATGTAAGTgtgcagagaaaagaaacttttgtTTATGAACAGGCAGCAAGTCACTTCCTCTTGTGTGTCATGTGGTTTATTTTAGATAACTTCACATTGTGTGTTCTGCTTGAAGTAAAATTCACAGAGAATGAGAAGCTATCTCTAAATAAT--GTTTGACCTtgaaaatatgataaattt-tTTGCCTCTTGATT--------CTAGTGACTTTTGAGCTtcaagagaaaacaggaaaaaaaaaaaaaagagagagagagagagagagaaaacaggatCTCTCTGCCAGCTTTTTTGAAATATAAGTCAGAGACTGGTCACTCCATCTAATACTGCCTATCTCATCTCACATACAGGAGCGGGATGCTGCACTCCAACCCTGGGGACTATGCCTGGGGTCAGACAGGGCTTGATGCCATTGTAACCCAGGTGAGGAGCTACCTTTT---GAGAATATCTGTTCAGTGTGTCTCATGTTTCCACAggcttc--ctgctttc-----tttctgctACTTTCTTGAAATTGCAGAGAATGTTTTGAGCTTTTGGGTTTCCA-TTTTACTAGTGGGACAAATGGTTTATGG--ATTTAATTTAGCATCCTTGTATTTACTATG--TCCAAGGGAATTTCTAGAATGTG-CTTCAcctccaaagaaaataaagacttcTTAAGAAGCAGTATATGTATTATG----GGCCTTTTGTTTAGTTCTGTGGGGATCCTGCAAATAAGTACTTTATAAAAAAAAGGAGAGTCTCACATGTTGAAGCAGGGATTTCTGCTAGATGGAGAAAAACaggggaaggaagcagagaaaaaggtATTCCCATGGCATGTATAATTTCTACTTGcttatgtgtattttaatttgattggtttttcatttcccttGTAGATTGCTGAGCACAGAAAGCATGCCATTTATGTCCAACTTTTCTTACAGGCAGTAATTTA-CTGTTTCTTAACTTAGCCTATGCTCCTCTCCATACTTccaccattttctttctctggcaGAAAGAAATTTTTGTACCAGTTCAGTATTACTTTTTAGTAATACTGTAAAGCTATAGTTTTATTCATGACATCACAACTCTTT-----ACTTGAAATTGATTTATTCCCAAAGGTAGGTCTTACAAACATGGGTCTGTC-TGTA-----GACTTAACACTAGTATCACTTTGAAATTGTAAAGGACTTTTAAATGTTCTAATAGCAGGAAAGGGAAAACCTAAGTCTCTCAGAGTTACAGAAGTAAGAACAGCTACCATTTCTAATATCTGCAGTGTTTACTCTCAGCCAGAGCAGCTTCCTC----TCCAGGGATATTGAGATGTCTgccatgtcttttttctttttcttttcttgtagctTTTAGGACAACTGGAAAACACAGGACCTCCCCCAGCTGACAAGGAAAAAATCATTTCTCTTCCAACAGTGACAGTAACTCAGGAACAAGTTGGTaggtttattttcatatttattttgtcaTCTTAT---ATCTGTTCAAAATTCTGGTACCTTCTTAATactgaatatattaaaatgaagCTATAGATCTCTAAAATCTAAAATACCTACCTGGGTACCAGGTGTGGAAGATACTTGTCCCTCCGTGATAATAATCAACAAGTATTTCCTGAGCCATTATCAAGTCACTTTCCAGGTACCATTGGAAATACAGAGGTACAAAGATACATAAGAGTTGACTCTTAATTAGTTAAAGAGTTTATTAGTGGAAGCAATACTCACcaaatgacttaaaa

a score=70260
s chr3            96786917 6096 + 160039680 [encoded data, 6931 characters]
s HiC_scaffold_1 106308144 5601 - 233722169 [encoded data, 6931 characters]

a score=21546
s chr3            96804925  956 + 160039680 ATTGAGGTGGCATGCCCACTATGAAGGACA---------TAGTCAGTGCTATCTTGGTGAGCTCAAGACCCAGAGTGACAGTTCAGGATCCTGTCAACTTTCTGACTTCTGATTCTAGAAAACTGAACTCATGGGGACAATCCAC----ACCTTTGCTTTATTTTTGCTTTTTAATCCGGTAGT---TTGAGTGGATTCCTGTTTCTTAGAGCTGAATGCTTCTTTGGGCA------------------------------------ATCACTCATTTCAAACCCATCTCTGTCTATTTGAGGAAATACAGCTTCATCTCTGGGAGAAGTCCAGAGTA-AGCATCAAAAGGCCTAGGTTTTAGACCTGTATTT------TTACTAGC-CCAGTCAATGAGTGCCATTAAATAA-----------------TTTTCTCCACCTCCTAGTGACTCAGTCTTAT----AATGAGAAT---------GAAAGGCATTCTATA--------AAGACGTAATTACCTTTGTATATACACTTTGTAGAAAGGTGTAAGATAAGGTATATCTGCCAATTGGGGTGTCAGCAGAGGACTGGGCAATAGGAAGGA---TTCTCAAGGGAACTGC-TATCTAGGACCTCAGATAGCTACTT----------------GAAAGTC------------CCACTGTCTGCCCTGCTCACTGCTCC-TCTGATGGCATTAGGGATATTAGGGACTCACCTGTGACTAGAACGGAGAGAAAGTGGCCATGAA--TGTAGATTTCTGGTTTCTGGCTTCTGGCACAGCACTGGTAGGTCCCACTGTCTGATGGTG--TAGCTTGTTCTATGGTGAACACCAACTGAGATGACTTTTCAG-TGATGCCATCTGTCTCAGGATCCCTTTTAACCCTAAGCTGTTCTAAGTTGGTCTCAGGGGAACAGTTCCAAGGATTGTCTTTGCACCAGAAGAGTATTAGCCCCTCAGCTTCGTCTTTCTTGTGCCACAAAGTACAGGTGAGGTCCAGTCGCCCTCCTTTCTGGGATGCTGAGCTGGTGACATGAATACATCCTGGAAC-GGAATGCAGA
s HiC_scaffold_1 106329944 1018 - 233722169 ATAGGGAAAACATGCATAAAATGCAGGACAATGGAAAGATAACCCTAGCTGTCTTGAAGAAATTGAAACACAAAGTAATTGTTGTGGATCTT--------------------TTCTAGGAAATGGAACTCATGAGAGCCACCAGCTGTGCCTTCTGCTTTATTTCCCCTCCCCAAATTGGTGGTGGTTTGATTAGGTTC---TTTC----AACTAAAGGCTT--TTAAgcatctctgtcttctctctctctctctctctctctctctctctctctctctctctctctctctctctgtttttagAAATT--GCCACAACTCAGAGAGAACCCTTATTTGGAAAATCAGTAGGCCTAAATTCCAGACCTGTATGTCTGCATTTTCTAGCACCACTATATAAATGGCATTacacaggtttttttgttttttttttttttttacctctctgTGACTTAGTCTCAATAGAACTGAGATTATCACTGTAGTAAAGCATTTAACATTAAAGACAAAATGAGATCACCTTTGTATGTGTGCTTCA----------------AAGGCAAGTCTCCC-----------TGGTAACAGATTGAATAATAGGAAAGACATTTCCCAAGGAGACTGCCTATCCACAGCTTGAAACATATCCTTTCTCTAGTCATTCAGTGAGAGTTAGAATTTATGTTTAACTGTTCACCCTACT---TGTTCCATTTGATTGGATTAGGAGAATTTGGGGCTCACTAG--ACTAGAACAGAGGAAAAATGAGCCTCAAGTTGCAAACTT---------AGCTTCTGCCACAGCACTGGTAGGTCTCATTGGTGAATAGTGACTGACTTTGTTTGTTGTGAGCACCAATTGAGATGATTTTTTCGCTGTCACCATCTGTCCCAGGATCCCTTTTAAGCCTCAGCTATTTCACGCTGGTTTCAGGTGAATAGGCCCAGAACTTGTCTTTGCACAAAACCAACATAAACCCCTCTGCT---TCTTTCTTATGCCACAAAGTACAGATTAAGCTCAGTCACTGTCCTTTATGTGACACCAAGCTGGTGATGTATATGCATCCTGAAAAGGGAATGAAGA

a score=9886
s chr3            96808715 321 + 160039680 AAAACATGCGTGGGGAACATCCTTCCCC-TGAGCCCAGGGTTCTCC---ATGGCTCTCTGCCCCGGGATCTGTCCTCACCACCATGTTGGAAGTTCACAATTGCCAGCAGGATGGCCAGGGCACAGCAGCTTTGGCCAGGGGCCATCAGGATTCTTTGCATGCTGTTGTCAGCCCCAGGAATTTCACGGAAATGTTGACTTTGCTGGTCTGTGGCTGCACACTCCTGAAAAGCACAGGAGAAACTCATTAGGTGAAGGCTTCCAGGCCTCTGTGGCCA---GCTCCCTGTTTTAGGTACTTGTTGGGTTTGCTCAAAGTGTGGTGGAG
s HiC_scaffold_1 106333162 309 - 233722169 aaaaaaaatatgggatCCAGCCTTCCACACAAGCCTTGGCTTCTCTCTAATGGCTGTTTCTGCTTAAGTTTGTCCCCACCACTAGGTTACATGTCCACAGGTGGCAGCAGGATGGTCAGAGCCCAGCAGCCTTTGCCAAGGGC-----------------TGTTGTCAGCAGCCTCAGGAACTTGAGGCAAATGTTGCTTTTGCTGGTCCTTGGCCTCACACTCCAG-AAAGCTCA-GAgggatcaactagacaaaaccTTCTGGGGCTCCAAGACCATGCATGTTCTGTTCCAGGTACCAGTTTTGGATGGCTGGAGCGTGATGGAG

a score=19618
s chr3            96819913 1288 + 160039680 CCCAATAGCATGATTTCAGTGTCTCCTCTCCCCTG---------TGGACAAGGTCCAGCCTACCCTGCTCCCTTATTAATTGCAGGAGCTCAGTCTGCCTCCTGTCTTC--------TTTGGTCACCGATCCCAAGGAT--------TCCAGAG-TTAATCTCCGAACTTCATTGGGCCACAGCAGACTTGCAGACAGTGAAGGTGCTAGAGCCTACCCAGCCTGCATGTCCAGAGTAAATGCTGCTGTTGGGCCTTGTTTGCCTTTGTAGCTCCATTGCCTGACTCCGT-GAGACTCTCGGTGTGTAT----TTGTGAGGAGTTGGC--------------CTGATTAGGGATCCCACCGATTTGTGCCA----AACAGTCCT--------------------------GGTAAATGAGGAAGCATGTGGGCCTAGACTG-GACAGAG------GGGGCAGAAGTTTCATTTCCTGGCTTCTGGGGACTGTTAGGAGACTGGCTTTTTCCCTAGAGAAGGGTGACCTGCTATTCCAGCACAGCCCATAGCTTTCTGGAAGGAACCCAGTCCTGGGGCCAGAGGGCACTTACACCAAAGCAC-----TGTGGGTGGTTTATCCTCTCCCAACCCCTGTCTCTGTTGGCCTTTAATCCAGAGTCCTTGGTAATATAAGACAAGAAGGGAGCCAGGGCTGTGTTAATTGTGGAGGCTGGCACCCTCAGGGGTGTGAGTAACAGGCTGACAGAGCAGGCCTTGAGAAGACAGTCTCAGCCTCGGTACTAAACAGTTCACCAAGGATTTTGACTTCTACGTCTGTCCTTTTAAGCTAGAAGGCAGAGCATCTGCCCAGTCCTGTGGTGGCCTAAGCAGTCTGTGCTTTCCTCCTGGACCACAGAGGGCACCACACCCTGTCCCAGTTAGGCCTCCCACCGAAGAGAGACCAGGCATGAGGAGACTGCTGGCTCAGCAGCTCAGCCACTGTCCCCTGCTCCACA---CACT---CAAGGTCACTTGAGTTTCTCCAT-----TCAGCCTGGTGGCAAAAATGACCACAGCCAAAGCTCTGCCTGACCAGTAGACTCTGCAGCCCTCACTCTTACAAAGTCAGATTCTGCAACAAGGATAGAGATGCACTTTCTCCAG-TGCAGGGCCACACTGTTTCCTCATACCAAAGTGAGAGCATGTAA----GAGCATCCA-----CCCACGACTGCTTGT-----------------TGCAAA---------------------TCCACTGTAG--TCCTCTCTCAGGTGTCTTCCAAACTCTGACCTTG----AAGAAGTTGGGGAAACTGGCATG-----CTTTGTG-GATCCACCTGTTCTCCACCTTCTCACAAACCCAGAGTCCCAAGCCTTCGAGATGCAGAATGC-CTGAATTTGGGTTTTATTATCTTG
s HiC_scaffold_1 106368565 1330 - 233722169 CCTCATGCCATGGctttggtgttttctttctcatgACCGTCCTTTTGACAGAGTCCAGATCGCCAGGCTCCCTTGTCAAGTGTGGGGCAAAGACCTGCCCCCAGCCTCTGAGCCTCGTCTGTTCACAGTATCCAGAGATCATTTAGCTCTTGAGATTCACTTCTCCACTTTACTGGACCACCTCAGACTTCTGGAAAATAAAGATGCGGGAGGCTAT---GTCTGCATGTTGGGAGTAACTGTAGTT-----------CTTCCCCTTGGAGTGGCCCTGGATGTGCCCACAGAGGCTCTTGGTGTGTGTGAGCTTGTGGGGTGCTGGCAGGGGAGAGCACTTCTGAGCCTCAGCCCCATCAAAATGCCCCATTAAAGCAGGACTCACACCTGCTTTGTGATTATTGCAATGGTGACTAAGGAAGCACATGGTGGAAGAGGGTGACAGAGAAGAAGGGGATGGAAGACCC---TGCTGG--TCCGAAGTCTGGTAGGAGACTCAGCTTCTCTCTCAAGAAGAGTAAACTGCCATCCTGGCATagacaata---ttttgaaaatga---agattCAGGGCCAGAGGGCACTGACAGCAGAGCAGAGCTGTGTGGGCATTTTAGCC----CCACCCCGTGCTGCTGCTGGCCTTTAGCCTAAAGTCTTTGGTAAGATAATATGATGAGGGAGTCAGGATTGTTTT-GTTGCAGAGCCAGGGGCAGC--AGGGTTTTGGTGTTAAGCATACAGAGCA-GCCCTGTGAAGAATGTCTCAGTTACACTTCTAA----------------------TTCCTAATCTGT--------------AGTGAATGATTCTGGTTCATACTGTGGTGTCCTCAAgagtttat-ttttcctccttgGGCATAGAAGATGCCAGATTCAGTTGCAGCCATGCCT-CCATTGAAGGGAGACCAGGC-TGTGG-GGCTGCTGGCTCAGCAGCCTGAACGCAGCCACGTGCTCCTCAGTTGACTTTACTAGGTAACCTCGGTTTTTCAGCACACACCAGACTGGTGGC------------------AGCACTTCCCATCCTATGGATTT-----CCAGCACCCCCACACTGTGTGA---------ATAAATAGA-ACGTGCCTCCCCTTGCCTCAGGCCCACGGTGTCTCCTGGACAACACGTAATGACACGTAACCCTGCACCTCCAGGTTGCCCAC--CTGCCTGTCCTCATCACCTCCTGGGTGCTACCCCTGAGCTGCCCCTATTGGTCCCAGTGTAGGATCTTTTCCCAAGCCCACACCAACCTCTGTCTTTGGTCAAATGAGTTGGGGAAACTAGCCTGTTCTCCTTTGTGCCATCCACatttcctcagcct---------ccaggaatTCCAAGCCTTCTTGATGCTGAATTCTTTGAATCGAGAATTTAACACATTG

a score=14469
s chr3            96823625 660 + 160039680 AAAAACCTTTTCTAGCCAACTCACAAATTGTCGCAACGTGTAGCACACCTGGGGCCCCCAGTCCTCCACTGGCCTGAAAGCCATTTGCTATAAGAACAAGAAAATTCTGATCATCAGCCACATGGGGGGGGGCTCAGTGTATACTACTGCAAAGAGGGGTGGCATTGTTCCACGAGCATTGTCCCACAAGCCACCCATCTGCT--CGCACAGCTGTAAAACATTTATCTCAGTCCTGCATCTGGACCCTGGCCTAATAAATTCCTCCAAAGGTATGCAGTC----CACATGGGTGGCTTCTCTAGATGGTGGCTGAGGGCAGTTACACAAAGAGGCAAAGGGAAGCAATCATAAAAGTTAGGTCAGGACAGCAACAGAGGACAGCAAGAGC-TGAAATGTCAGGGCTGGAGTAAGTTAATGAGCTACTAACAATGCAAAGTCAT-GTGGGACAATGAAATGTTGAAGTTGAAATACGAATTGGGGGCTCTCAGGT-CTCCCACAGCCAAGCTGACTTGTATCgtggaaagagcatgggatgcagaaacaaaagcacccgccatcagccaccaacctctgccatgaacttgagagataccgttggaaaagccgcttcatctctctgagtctTTTGTGTCATAGTCAGGAAAAAACAAAACAAAACTGAGG
s HiC_scaffold_1 106370999 588 - 233722169 AAATGTCCTTTGTATCCAACTTATAAGTGTTAATAATTTACAGCTTTCCAGAAGTCTTCAGGCCTCCCCTGTCTTAACACTCAGTtgctttaaaaaccaaaaagttcTGATCAGCAGTCACACGGGC-----CTGGGTGTGTGCTGCT------------------------------------------CCTCCCACCTAATTCCTTACACTCATAAAACATTTAACTTAGTCTCCCATCTGGACCCTGGCCTGAGAAATTCCTCCGCTGATCTGTAGACTGATTACACAGGCTACTTCTTCAG-TGGAGGATGAG-------ACAAGGAAGGGC-AGGAGAGACTGTCATAAAA-CTGACTCTGGACAGGGGCAGAAAACTGCCAGAGCTTGAAGTGCCAGGCTTGGAGTAAGTTAAGGAGCTACTAAAAAGACAAGGTAATGGTGGCACAATCAAGTA-GGAAACTGAAATA-ACATTTGCAGCTGTCAGGCACCTTCGGGGCTAAGGAGCCTGGGATGGTGGGAA-AGAATTAGCCCCAGAAGCCAAAGCACAGGGT-TTAGCTG--AGGCTCTGCCAGGAATCT----CGTGCCCTTGGCTAAGTCACTTTGCATCTAGTGGGTCTTTGTTTCATAGTGA--------------AAAACTGAGG

a score=49410
s chr3            96829026 4433 + 160039680 [encoded data, 5552 characters]
s HiC_scaffold_1 106377091 5116 - 233722169 [encoded data, 5552 characters]

a score=45239
s chr3            96849861 2796 + 160039680 AATTAAAAGAAGGTAGATTTGGCTCCTTAAACTTTCTGGATCATTGTTTTTAGACTTAACCTTCTTTAGGACAGGggacaaagttgagtttggttgg---cattagaggtggagcctctgtgttaagcatgcaattggatgcgtgggtctgacact-aggtgaaaagaccattcttg-gggagtagatttggaaatcatgagcgtGCTCTGCACAAAGGCTCCCTGGG--CCCCAGCATTGCTGTACTGCA-CGTGGAAGAATGGATCCCGACAAGCAGAGGCATAAGCGGTGTCTGGATGCTCTCAGGGCTTCATGCTTCAACTAGATTTCC-------TTGGATTGCCCATGGACTTATCCATTTGTTTTTAATCACAGAAATGGCCTCCACCTTCAACCCCAGAGAGTGTAAATTGTCCAAACAAGAGGGGCAGAACTATGGCTTCTTTCTCCGAATTGAGAAGGACACTGATGGTCACCTGATCCGGGTGATTGAGGAGGGGAGCCCAGCAGAGAAGGCGGGGCTCCTGGACGGTGACAGGGTGCTCAGGATCAATGGTGTCTTTGTCGACAAGGAGGAGCATGCGCAGGTGAGTG-GACAGCTGGGG---TTCTAGCATCTCTCCAGCCTCCA---TATCTCTGCCCGTTACGGTTTTGGGGACCAGAGGAGCTTGCTTCTTTTCTGCCTGCCACTGGCATGGATTTATTATCATATTTTATGTCAGACAGTCTAGTTGCTTATAATTAACTGAGAACTGTAAGAATTCTTATACTTCAggggctgtcaatgtggctcagtgggtgaaggtgcttgctgccaagcctggtgacctgagttcaaatccctacttggtggaagaagagaactgacttccacaagtgtcctctgatttccacctgcgtgtgccatggcatgtgcCCTGTTATAAAGCCAATCAATCAATACAGTAAAAAATGTTGTACTTTAATAGTATCAGGCTGAACATGCATTGCCCATTTGCTGTGAGCTAGACAATTTTATCTGAATAACCTGTTAGCCCCTCAGCACGAGCTGGCGATTGCACAGACGAGGCAGCCATATGTAGGTGACTTAGCCTGTT--AACATTCACGTGGTGAGCATATGCGAGAGGCTGGCCTTGCCCCATCTCACTGTACCATGCTGCTCCTTCCTAGGCCTGAGAAGCCCCACTGTGCTCTCTAGCTcagccgttctcatttttcctgatgctgagaccctgtaacacagttcctcatgctatggtgaccctcaaccataacattatttctgttgatacttcataactgtaattatgctactgttatgaatcataatgtaaatatctgttgtgctggatatctgataggcgacaaaggggttatgacacacaggctgaaaacagccgCTCTAGAGCACTCATCTCTGAGAAAGACCAGTCCTTGTAAGGGCTTCCTGGATTCCCACAATGCCAGGGACCCAGTCTAATCCTCCC-------CTAGGA-TGTAGTGGTGAAGGTGTCTGATACCCCTCTGCTTAGGGGTATGGGTATCAAGTCAGCCTTGCCATCTTTAGGGACACACGATGAGCATCTTCCTCCTGCAGTTGATGTGGGGAGGGTACCCT-----TTACCACTCTCCCCCTTTCTTCCTAGGTGGTGGAGCTGGTCAGAAAGAGTGGGAATTCAGTGACTCTGCTGGTCCTGGATGGAGACTCCTATGAGAAGGCTGTGAAAAATCAGGTGGATTTGAAAGAGCTGGATCAAAGCCAGAGGGAGGCCGCTCTGAATGATAAGAAACCGGGCCCTGGGATGAACGGAGCGGTGGAGC--CGTGTGCCCAGCCACGGCTCTGCTACCTGGTGAAGGAGGGCAACAGCTTTGGCTTCTCTCTGAAAACTATCCAAGGTGAGCTTGGGGTGAGGACCAAACAATAGCCTTCTCGAAGACAGA---TGCTGGCTAAGGAC--AGCTTCGCTG------CAGTTGCTACGTATGCGCAGGGTGGCGTCACTCTCTTCACTCTTTTCCAGTAGGAACCCTTTCTCTGCAGTTGTACAAAGAGAGATCAGGACTTTGGCCACATTGGACAGCA--GCAAGGGCTGAGTGGGGTGCGGGCACTCTT---CCCTAGTGTTTGTTAGGCTAGTCTTTCAATTCAAGGGCTGATGCCTCTTCATTGTTTGTGtggtttttcgagacagggtttctctgggtagccttggcttttctggaatttactctgtagacctggctgatcttgaactcagagatgcacctgcctgagtgaggggactaaaggcatgcaccaccactacagggctTC---ATTGTTCTTTTCTAGATCCTGTAGGGTGAAGGTGGAGGGGAAGCAAGGAGGAGTTTGTTTGTTTTTTTTTtgtgtgtgtgtgtgtgtgtgtgtgtgATAGTTACCATTGAGTAAGACTGATCATCTCTTTTCCTGGCCTAGAGAAGCCGCATGTTCATGTACTTATTCAGCACATTTTTGAGCATCTGTCATCATGTTATAACCCCAT-ATTGTTGCTGAAGCTG--GTATCTAAGCCCTAGCCTCCTGAGACATT---ATAGTACTCTCAGTTGAGGTCCAGTCTCAACTGTCCTAAG---ATGTCACTGGCCTAT-GCTTAGAGGAGCATACTTGAGAATCCCTG----------GTCCTAGAGGGTCCTGTTTCTGTGGTTTCAGAGGAACACACCATGCCACACTGTTGACCAGAGTTCT----TGGTATTTCCCTGAGAAACTGGCTGGAATTGGGAGCCA---TGCTAGTTGGCTGGCTATATCTTTAAT----------------TGTTATACAGAGAGTAGAAGAGGTTTGTAGTTCAGAAAA
s HiC_scaffold_1 106392910 2176 - 233722169 AAATGAAAGAAGATTGAT-------CATAAAAGTTTTGGATCAT-ATATttagatttaatttcttttcagtcAGGGAGCAAAGAGGAGTTTGGTTTGAGCTACTAAAGTTAAAGCCTC-------AGTATACAGTTGAATATTTGGATCTGAAACTCAAGTAAAAACATCAATCTTGTGGAAACAGGTTTAGA---TATTAGCAAGTCCTGTATAGCATC-CTCTGAAACCCCCAGTGTTCCTAGATTGAAACATGGGAGAACGAAATCAGAGGAGATAAAGGACA----------GGGTTCTTACA-------------CGATTagattttcctttccatttgttttctcatACATTCAT-------TTTTCCACTTCAGAAATGGCTGCCATCTTCAACGCCCGAGAATGTAAACTGTCCAAACTGGAAGGGCAAAACTACGGCTTCTTCCTGCGAATTGAGAAGGACACTGACGGGCACCTGGTCCGGGTGATTGAGAAGGGTAGCCCGGCAGAGGAGGCTGGGCTCCTGGATGGAGACAGAGTTCTTAGGATCAATGGTGTCTTTGTCGATAAGGAAGAGCATGTGCAGGTGAACGAGATGTTTAGGGTTCTTCTAGTATCTCTTCGGCCTCTACATTGTCTCTGCCAATTATGATTTTTGGGGTCAGTAGAACTTGGTTCCTTCCTGGCTGTCACTGGCAAGGATTTACCATTATTTTTCTTG---GTCATTCAAGACCTCTGTAATTAACCAAAacctataaaaa------------------tattaatgta-----------------------tgcC-------------------------------------------AGAACTG-------------------------------------------------------TGCAAAGGCAAT---TTAATAT----------------TCCTAATCTTGTTAAG--------GCCTTATC-----------------ACAACGTCATC--AAGCCTATATTAGCATCT-------------------TGCAGACAAGGAAGTTAAGTGCAGAGAAATTAGCTTGCTTGAATGTTCACAGAGTGACTATATGGGGG-------------------------------------CCTTCC----------------------------------------TCTAATACTGCCTGATTC-----CCTTGT---------------------------------CACTACTTTGTCTC--------CCCCATAG----AACTGGGGGGCTGTTG--------------------TGCTGTG--GGATATC------------------------------------------------------ATTCACTTCTAGAAAAGTCCAGTCATTGTAAATGTTCCCTGGATTCCAACAATGCCAGGGGCCCATCCTAATTTGCACGTGAAGATTAGGAGCATTATGGGGAAGGTGGCTGAGACCC-------------TATGTGTGTCAGGTCAGTCATCAGAACCACACAGCCAAATGACAAGCATTTCCCTCTTGCAGTTGATGAAGGGTTATTAATATTAAAGTAACCCCTCCCCCCAT------CTAGGTGGTGAATCTGGTCCGAAAGAGTGGAAATTCAGTAACTTTACTAGTTCTGGATGGGGATTCCTATGAGAAAGCTGTGAAAAAAGGGGTTGACTTGAAAGAGTTGGGTCAAATCCA---GGAGGTGGATTCGAATGGCTTGAAAATGGCCCCTGTGCTAAATGGA-----GGAGCAACTTGGACCCAGCCGAGGCTCTGCTACCTGGTGAAGGAGGGCAAAAGCTATGGCTTCTCTCTGAAAACTGTCAAAGGTAAGCTGAGGGTAAGGTTCTGGTGATGGCCTACTAGAAGGAAAATATTACCAGTTAATgacttttcttctttgacttttcaGTTGCTTTAGATACCCCTGCCGCCCTCCCTCTCTT----------------------GCTTGGCACAGTTGTGCCACTTGGGATCAGG----------CAATGGACAGCACCCCAAGTCTGGGGTGGTCCTTGGGCACTCTTGTGCCCCGGAAT---------TAGATTGACACTTCAAGGCCAGAAGGCT-------------------------------------------------------------------------------------------------------------------AGAGGGCTCA---------------------GGCTTCTGAATCACTCTTTTCTAACTCCCTTAAGATGAAGgtgg------aacaagaaaaaaattttt---------------------------------cctaataGCTAATCTTGAGTAAGACTAGT-ATTTTTTTTCATCGCC-AGAGTGCCCAGATAGT-------TTATTCAACAAATTCCTGAGCACCTACTGACGTGTCAGATGCCCTTAACAGTTGCCAAGGATACTGCAAAAAAGCTCCACCTTCTTATGAAATGTCAATAACATCCTCTGCTGTAGCCCAGCTTCAGCTGTTCTGAAACTACGCTTCTGACCTCTAGCGAAGAGATTCATATTGGTGAAACCCTGATGTCAGGAAGTACTAGA-GATCCTG-TCCCATAATTTTGGAAGTGCAGACTG------ATCTGTGTTCAGGGTTCTACAATGG--CTTCCCTGAGACACTAGCTGGACTCAGAGGACATAGTGTTAGCTGGTTGGTGCCATCTCTGATGTTGCCCTCTGCCCAGTGTTTTTCTGGCACTGGTGGTAAGTCATAATTCAGAAAA

a score=27106
s chr3            96854501 1932 + 160039680 CATTTCTTTGCAGTAGTTCTCTCT-------------TCTTCCAGGTAAAAAGGGTGTGTACTTGACTAATATAATGCCTCAGGGCGTGGCCATGAAAGCTGGTGTTCTGGCTGATGATCACTTGATTGAAGTGAATGGAGAAAATGTAGAGAACGCCAGCCATGAGGAAGTGGTTGAAAAGGTACGGCTTGACCTGGAAGGGGGCTTTTCTCACCTCCCTTCC--CCTCAGTCTTTACTGGAAGTAGCAGCAGGTGGGCTGGCCTGGGATGAGCCTGTGATGGGAGACCAGTCATCTAGGTGAGATGACCCTCTTTGTGTCAAGGGTGCGTGGAATCTCTGGTAACATGGGCA----------AGTGCTAA--CAGGGCACTGGCT-------------------------------TCCCTCTTCCTTTG---------TTTCCA------------------------------TTTCCTTACTTTCAGTTACTTGTAGT-----------GGAAA-----AATAGGTGGTTTGggggcttcagagatgggtcagtggttaagagcactgactactcttccagaggtcctgagtttaattcccaacaaccacatggtg------------------gctcacaaccatctgtaatgagatctgatgtcctc--ttctgcatgtctgaagacagctacaatatactcatatacattaaataaat-----aatataagaaataggtggttcatttgtttaaataactatcactacaatatattgtccataattagttt---------------attattattgttttttgttact--tactgtgtccaatttgtaagttaaactctcacaggtttgtgtgcagaggaaagaacagtacagatagggctcagtatcgtttgcCATCTGTAGATGGCTGCTTCGTTCACTGAT-----GGACAGGTGTA-GTGCCCAAGGTTGGatgtgc--tagacaaggatggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagggatgaattccat------------cactactcaaaacagtcttccgcccaaagcttg--agtaatttctgg---tctccattttgtactcccatactgtgaatggccctgggtaa---------cagaCTGTACC--------TGTCAGGTGC------TAGAAGCCCCAGCATG------------AGCCAGGGC-------------------TCTCTTGTTGAAGTCACATGGAACCTTGAAAATGGACCAACCTCTTGTT---TTAGTAGAATTATGTTCCAAAGCGGACCCTTATTTTCTTTTCTAGAATTCCATTCTGTCCC-CACCTGCACACCTTTCTGGGCTCTGAGGACTCAGGCTCCCACTTGAGTTCAGTTACCTTTTGTGTGGTTGGATGTTTTCCCCAAG------------------------------------TACCAGTCAGGCTGGAGCAAGCAGCACAAACGCTCACGCTCAGGCCGCATGCCTCGAGCTTTCTG-------------------CTCTGCACGGCTACCTTC---CTTCCAGTGTTTTTTTGTGAATGCCCTGCCCTTTTCATCTGTGTGTCTTGCTATAGGTGACAAAGTCAGGAAGCCGTATCATGTTCCTCCTTGTGGACAAAGAAACTGCCAGGTGCCATAGTGAACAGAAGACACAATTCAAGAGGGAGACAGCCAGTTTGAAACTGCTGCCCCACCAGCCCCGGGTGGTAGTGATCAAGAAGGGCAGCAATGGCTATGGCTTCTATCTGAGGGCGGGGCCTGAACAGAAAGGTGAGGCACT---AGGGCAGGTG--------------------AGTCCCTCCTCCTAGTCTCTGGCTCACCAAGCTCCAGCTCTATCCCAGCTCTACCAGGGAACTggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggagggagagCTGTCCAGGTTGCCCCAGGTGACTGGATGCTGGAGTCCCCA--TTGCCATTGCAGAGTAGTCAGGCAGACTTTAGTATCTGGACAGATGTGTGAGACTAATTtagctctttcctgaaagaaataacacatttggg--gcatttgctgatttctgtggtgtaaagatccctaccatgtctggcttcacatcatctacataatggccttgaatgtaaggtcgagcaggttgtacagagttagccc
s HiC_scaffold_1 106395844 2104 - 233722169 CAGTTCTGTGCACTGGCGCTCACTCCCATCTCCACCATCTTCCAGATAAAAAGGGAGTGTACATGACTGACATAACACCGCAGGGTGCGGCTATGAGAGCTGGAGTCCTGGCTGAGGATCACTTGCTTGAAGTGAATGGAGAGAACGTAGAGAATGCCAGTCACGAGGAAGTGGTTGAAAAGGTACTGCCTGTCCCCCAGGACTGCTTTTGCTAGCTTTTTACTTACCTCAGAAGCCACGGGAAGTAGT------TGGTAGGATCTGGGATGAGTTT-----------------ATCTCGCTTG------TCTCTTTGTACAAAGGGTGAACAGATTCACGAGTGGCATCAATAGTGTTTGTGCAGTTTTAGATTAAAGCCTTTGCTAGTTTCAGGTCAAGAAGTCTAAAGAACCATCTCCCTtttcttttggatcttatttgtcCAATAAGCATGCTGCCCAGTCTGCAGTGTCACTTTCTGCAGTTTCAGTTGACTGTGGTTAGTcacatctgaaaatattaaatgggaaGATCCAGaattccaaa-atgta-caatg--tacaagttttaaataacttattatagctattttgtt--attgttgttcatCACttactgtgctttttaaaaaattaaacccagggcc-tttgcattgagct---acatccctagctctttatgttttgagacag---------ggtcttactaagttgctaaattgcccaggctggggttgaGTTTGTCCTCCTGtttcaac-----ttcccagagtgctggggttacaagtgggttccaccatgcccagtgattcctaatttttttttttatcagtaccggg-----------gattgaactcacgaccacctgcttgcaaggcaggtacttatgccgct-gagctaaatccca---gcccccagt-GATTCCTAATTTATAAACTAAACTTTATTATAGGTATGCATGTTCAGGAAATAAAGGGCAGTAAGCAGGGGTAGTGTGTACA---GCATGGATACAC-TGGGAAAAGGGATGGTTTATGCAAGTGTTCACTGCACTACTCAGAAGAGAATGCAACCTAATGCATATTAATTATGCTTGAAGTTCTCCATGTAATACTTTTGAAGAGCAGCTGACCTCAGATAAATGAAACTTCAAAAAGTACAAGTATAGATGGCAGGCGTCTTCTGTACAGAGCCACACATGCAAATATTGGAAGGCCATGGCACACTAAAAtactgggaagttttcctttgaGGTCCTTAAGAACCTT--AACTTCACCAACCTTTTCTTCCCTTGGTAGGATGATCTTTCAGAGtggatctttcttttcttttcca-aattcc--tCTGGCCTATGCCTACACACCTTTCTGGGTTTTCTGAATTTCAGTTTTGTCTTGGGTTCA-TTAACATCTCTGTGGATAAGATTGCACTTAAAGGGATAAAGAGCAACTATAGAAGTGGAGATAGATAAATAACAATTGGGTGGTAGAAAATAGTATGACAGCTTATAAGCAGACCCTACATCCTATGCTTTCTGTTGAACACAGAGACAGGGCCTTTGTACAGAAACCATCGGATTCCCAGCATTGTTCTTGGAAG-----------TTCACCTGTGTGTGTTGTTGCAGGTGAAGAAGTCTGGAAACTGTGTCATGTTCCTTCTTGTAGACAAAGAAACTGACAAATACCATAGTGAACAAAGCATACAATTCAAGAGGGAAACAGCTAGTCTGAAACTGCTGCCCCATCAGCCTCGGATTGTGGAGATGAAGAAGGGAAGCAATGGCTATGGTTTCTATCTGAGGGCTGGGCCGGAACAGAAAGGTGAGGCACTAAAAGGGCAGGAAACCAAACAGGGTAACCGCCCAGTTCTTCATCCCAA--CATGACTCTCAAGTCTTCG----TAGGTCAGCTCT-CCACACAAATATAAGCACAGTAAGGAGTTAAGAAGAACAAGCTGTTAG------------------------TTTCTGTATTACTTCGGGGCTTGGTCTATTGGGATCCTGAAGTTTCCATAGCAGAGTGATGAGGTAGA------------GGCA---GTGATACATTGGTTAATTGGCTTTCTGAAAAACAGAA------TGGGTAGCATTTGCTGACTTTCGTAGTGTAAATATTTGCACCGTATGTGCTTTCAAGCTACTAACACGGTATCTCTGAATACAGTGTGTA---------ACGGAGTTGGCTC

a score=18295
s chr3            96856931 562 + 160039680 TGGGTAAGAGTTGTGGCTGTGACAATGCCTCACTGACTGCCTTGGAACTT--------------GCTCAGCTG--TCACTTTGTCAAAAATAAACTTCAGATACTTTTAGTAAATCCTGGGTTCTCAATCTTTTAAGAGCCTTTCAC-GTTAGATGCTAGGTGTGCTCCAGGAGAGG---CTAGG--GGCATGTTTGTAGCTCCTGGGATGTAGGGGTGTAGGTAGGGGGAGGAGTTGGCTTCAGGATGCCTT------------------------------------------------------------TATTCCGATAACTTTTCTTTGTGGGATGGTAGGTCAAATCATTAAGGACATAGAACCCGGGAGCCCAGCAGAGGCAGCTGGCTTGAAGAACAATGACTTGGTAGTTGCTGTCAATGGCAAGTCTGTGGAAGCTCTTGATCATGACGGTGTGGTGGAAATGATTAGAAAAGGTGGAGACCAGACTACTCTGTTGGTGCTGGACAAAGAGGCAGAGAGCATCTATAGCCTGGTAAGTAATTC-CAGCAATGCA---ATACATTAAGGCTGGGTCTCTTCACTCATGCCCTCCAGCTTTGGGCTGAG------TTACTTTGCTCCTCAACAAGGATGGGGCGTA
s HiC_scaffold_1 106399866 627 - 233722169 TGTGTGAGATTTACAGATATAAGTATGCTT-ACTGACTTC--TGGGGCTTTGTTGACCCTTAATGCTTAGCCTGCTTATTGTGTCAAGATTGACTGTCAGACACGTTTTGTAA--CATGAATCTTACTGCTTTAAAGATCCTTTCATTGTTAACGGTTGGGTTTGTTTCTGGAGAGGAGCCCAGATAGGTGCTTATGCAGTTCTTGGGTTGTAGGGG----------GAAAACAGTCATGCTTAGCATACCTTACGTATTTGTTTCATCAGGACTTTGTACTCCAGCAGAAATCCCACAGTTTGTTTAGTATCTTTTctgacaatttaatttttttgg--ggtAGGTCAAATCATCAAGGACATAGATTCTggaagtccagcagaggcagctGGCTTGAAGAAAAACGATTTGGTAGTTGCTGTCAATGGCGAGTCTGTGGAAACCCTCGATCATGACAGTGTGGTAGAAATGattagaaagggaggagatgagaCCTCACTGTTGGTGGTTGACAAAGAAACGGATAATCTATACAAACTGGTGAGTAATACAAAGCCACACATTCATGTGTTAAGGTTGGGTCTGTT----------CTCAAACTTTGGGAAGGGTTATTATTACTTTGTTCTTCAAACTGGACagggcata

a score=52711
s chr3            96868009 3617 + 160039680 [encoded data, 4373 characters]
s HiC_scaffold_1 106403781 3957 - 233722169 [encoded data, 4373 characters]

a score=17330
s chr3            96872421 1773 + 160039680 AATCACATTTTGGGCACTCAACAACTGTAGACACAAAGGCAGTCAAT-AAACTTACCATTATCTGCGCTAACAGCAGGACGATGACGTTGGAGGACTTGCTGCTGGAGATGGCATAAAAGAACTGTGGAGGAAGGGAGAGAGA-----TGAGCGCAGTGGTGCAGTAGGCTCTGCTCATGA--CAATGTGCTGCAGCCAC-----------CCTCTTTCGTGGCACAAAAA-GTACAGCAGGCTCGGGAGG--CAAGGCTACAGAGAGGGCCTTCAAATACAACACAAACCAGTTTCCCC----AGATAGTTGGTGGTTTCA--TCTGACTCAACAA--------GGGAACCTTG-GCTGTTGAGTTTCAGAAGCTGTAACGC---CCCGCCCGGCATCACCACAACACTGACCAGCAATCTGGGAGCACTCCAGGCACCTGCAG--CTGTCAAGGGGT--CCGAGTTCTTCCCTCCCTATCTCTTTCCTTTCAGTGTCTGGATCACAAGGGAGGACCCACTTTTCATCACCACATGACCTGGTTTATGCTGCAAAGAAAGAGCTGCATGCTCTGTCCTCCACTTCCATTGTCTTCCTCTCTGTGGTTTACAATCACTGGAACCTTGAATGTCCATCTCAGTCATTTTTTTCTTTCTTTTTTTGTTttttgttttttcaagacagggttt--tttctgtgtagccctggctgtcctggaactcacgctgtagaccaggctggcctcgaactcagaaatccgcc----------tgcctctgcctcc-caagtgctgggattaaaggtgtgtgccaccacacccggctTCATTTTTTT---CCTATGTACCTGCTGAATCCCC----TGTGACAAGCTTGGTTATAGATGATC-CGACAGATCAATGAACAGAATGGACCCTTCATTACCTTTGGAATGGATCTGTGGCTGGTAGATATTGTCATACGTTACCCACGACTTACAGAAAGGTCTTTTTCTTTGGTGTGT-GTGTGTGTCGCCTGAGTTGT----TCAGACTGTTGCTGAGGATCTAACTCAGAAGT-----------------CATGCAATTAAATA----ACGGCCTTTAAACTGGGTGACACGACATACCTTGGTGAGTGTGATCAGCAGTCCTCTGATGGATGTGACAATGATTATTCCAACCAGAATGAAGGAGATGTGCTGAGACCAGAACTTCACCTGCCATGAGAACAGAAGGAGAGGCTATT--ATACTTCCGGGCAGCGTGGGAGCTGATG--TGA----------ACTGTGGTGACTTACAAGACAGAGTCTATCAGTCCTCCTGGCTGCTTCT---------GAAGCAAACACCTACAGGTGGT-----AGATACCCATGGGAAGACTGTACTGGATCCCTAGTCAGCTGACTCAATCAAGTCTTAAGGGTC---AGCCAGCCAGTGGAGAGAGGTGGGCGGAAAACACTCATCACCAGAAGCCCATAGCTGATGACA-------------TGCTCCTCCTGGAGAAGCGAGAGGACGGGG--TGAGGACAGAACTGAGCAG-CACCTGACTGCTCTCAGTGCTATGGAGAAAGGATCACTGACTACAGCACTGCCAGGAGTAA-AGACC-----AAGGAAATCACAGGAA------------------------------------------------------------GATTGCACAAGGATTCTTGGGA---------------------------CTCTCACTTGAGGCACA------CATTGG------AGTTCTCTT-----CTGCTGCACTGCTTGACAGGGAGAAGCAGTTTTGGGAACCTGTGCTTGCCTGTTCTCAGGCATGTGAGGCCAGGGCTGCATCAACATCTAAAAAGCTCGTTATTCTGAGAATGGCCATGGAAGAAGTACATGTGTCATGGGTGGACCAGATACATA------------------GGAGCAGTGACAGAGTGCTCACCTCTAAAAGTGTAGCCCAGTaaaaa
s HiC_scaffold_1 106407774 1821 - 233722169 AAACACATTTCTAGTATTTTATAGCTGTAAACAAAAAACTAGTTTGTTAAACTTACCATTATCTGTGCTAATAGCAGGACAATGACATTGGAGGACTTACTGCTTGAGATGGCATAAAAGAACTGttaagaaagggaggaaggatgATTTAAAGCACTGTTGC--TAGATTCTTGTGAAGAAGTAACATGGTAaacctttatttaaaaatgtctctTCCATGCTACAATCTTGTATAGAACAATTCAGATGATTAAAGTTATAAAGAAGACACTTGAAACAGACTAAAATTAGTTTCCCCTTCAAGGCAGTTGGTGGTTTTAGGTTTTACGctagaatatatgaaaagatTCTTATGCATCAAAACTTCAGAAATTCGGATGCACATCACCTTTACATCACCGTAATAC--ACTAAAAC----GGTTAACTCCACGCCACTTCAAGATTGTTAATGGGCTACTGAGCTCTCACCTCAAAATT------------GTG-CTAGATGACTGGTGA---------TTTC--------------------------------------------CTCTTGTCttaactttc----tcttctttcaaatggCTTTCA-------GATTTAGAAATCTCTACCT---------------------------------TTTCTACCAGAGAGGACTCCCTTTCCATGAAGCCTT-------------CCTATGTTG--------------------ATCAAAAAACAGCTGAATATTATGTTCCCCTGCTTCCACATCTTCT----TTATAAATG---------ACTCTTATAATTATTCTTCTAAACTCAAACGTCTGCTGAATGCCTATCATGTGCCAAGTTCTATTACAGATGATGGTGAAACACCCATCAACAAAACAGACCCTT-ATTACCTTTAGACCTTATCTGTGAGTGGTGTGTAATGTCATATACTGCC------------atagtttaacttttttattGTGTTGCGTATCTTTAAAAAGTTGTGATCTCGGA---GGGCAGAGACTCTGATTGGGTAACATTATTTCATAGTACCGTAtgtaattaaatatatcagtactTTCTAACATTGCAATACAACATACCTTGGTAAGAGTGATCAGCAATCCTCTGATGGATGTGACAATGATTATTCCAACTAGAATGAAGGAAATGTGTTGGGACCAGAACTTTACCTGTTAC---AACAGAAAGAGGAAATATTTGTTAAGTCTCTATTAAGAAAGATATGATGGCTAAGTATacaattatttctgtgac-taggaGATGAAACTTAATAGACCTT---ACTCTTTTTTAAGGGATGAAAGCAAGCAAGT--AAGTGGTAAGTGAAACACCTGTAGCAAGACTGCAGTAGCCATCTTAATAGCCAA-TGAACTAAATCTTAAAAGGCAGAAGAAAGCAAGTCTAGTGAAGTGAGTCAAAA-----CAACACTAATAAAACCAAGGTAATGagactgtttgtttgtttatttatttttggta---------ccggggattgaattcacaaccatgcagtttccaggcaggtgcttatgccgctgagctagatccccagccaaTAATACAGTTTAGAGTAATAAATCAAGAGAAggaattaaaaggaaacaaagttcAAACTTAATAGTACCttggttatttttaatatctATGAATGCTAATTCTATGATTACACAAAACCTCAAGGAATCTTTTTATAATAAGAATAGACTTCAGCTATATCTTAGGACACAGAACTTCACTGATCACATAATACTTTTGCTCCCTCCTGCATTGCTTGATAGAG----GCAGTTTTGGGATTCAGTTCTTCAAAGTTTCTGAGGAAGAGCTGTTATTGCT-----AACATCTAAAAAGCTTGCTACTC--AAAAT---TATGAAATGTGAAGGTGAATTATAGATGGTCTATACACATAGCAGGCAAATGACCTTAGGAAGCAGTGATAAGGCAagcatttctaaaaatttagctcagtaaaaa

a score=18918
s chr3            96875025 751 + 160039680 ACACCCGTCCTACTATT-AACAGTTCATCAGCCTGAATGAT-GTC---------ATCTG-GAAATACATCATACTCTGAATACACACACTGACCTCGA-----GATCAGCTGTGTTTATGA--------------AATAGGAAGAAGTGTTCTTAAAAATAAACAAACAAACTCTATTTTATACATAGCTAACAA--ATCAACTTTGGTCCAAGGTCCACCTTACATGACTGATAAAGATTGTTTCTTTAT---------CATTTCTGTTCTACTTCAGAACACTAATTAGTTGTTAATTTTCTACCAGGAGA-TCAAAGGTGAGCTGTGAGTT---TGCAGAGCTTGTTGAATATCACAGAGAAAGAGCTGGGTACTTGGCA-----------GGAGAAACTGGCTGAGTGGTAG-TGGCTGTGGGCAGGCCAAGGGGAACCTGTAGCTACAGGAAGTACCCATGAAGATCA-GAACCAGTCTCGGCTTACAGTTTTACAATAAGAAAGCTAAACTTGGTTATTTACAAATGTGCTGTGT-AAGCTGTCAACACTTATAGAGGAC--------AAATGGTCCCAAAGTTCAGGAGTTAAAGCCAGAG------------CGTCAGGCTATGGCGGGATGGAGCAGAAGAAAACTTAAACCAGGATCT-AGCATGGCTCTTACGTCAAACTGGATTCCCAGATAATTCACAGTGATCTCGATGCCTCTGGTGACAGGGTCAGTTTTCCCAACTCGATCAAGAACAATATTGATGGTAGCCTGCA-AGACAGA-ACTTACATTAGAACACCTTCCATTACCGACTCCAAGAGTGA
s HiC_scaffold_1 106410098 802 - 233722169 ATGCCTGGCGTATTATTCAAGTGTTAATCAGCCCAAATCATTGtccacacatatatttataaaatatattaatctaTGAATAAGGTCACTAAACTAAATTGAGGCACGGGTGTATTTATGACACTGGTTTTATTAAACGGGTagaa---------aagatgatttaaaaaattcaacattgTACA--GTTGATAGTTATAATCTTTAGTCCATGGTCTACATTA----ACTGATACAGATCTTTTTTATATAGCCAAAATTATTTCAGGTCCAACACGTGACACTAATTAGTT---AATTTTCTACTAGGTGAATCAAAGGTGAGTT-TGAGTTACTTGCAGAACTCATTAGCGAGCACAGAAAGGAGGATAGAAA----GCACAAAAAGGTGGGGAGAAACTGGCAGAGTAGCAGCTAGCTAcagagaagcagaggaagaaCTGTAGAAATAATCAGCATCTAAGACAATAATGTACCAGTCACTACTTATTCATTTACATTAAGAAAGAGAAACCTGGCCTATTACAAATGTGCCATGTGAAAATGGCAACTTATGCAGTGGATCACAtgaagaaaagacacagaagcaagaaCTTAAATATGGGGGAGTCCTAACAATGTTAAGTTATagcagataaaataagaaaccatAATAAATCAAGATCTTAATGGAACTCTTACATCAAACTGGATTCCTAGGTAATTCACAGTGATCTCAATGCCTCTTGTGACAGGATCAGTTTTCCCAACTCGATCAAAAACAATATTGATGGTTGCCTGTAGAGACACAGACCTGCAT---------CTTAATTACTAATTCAAACACTGA

a score=34514
s chr3            96880054 2608 + 160039680 AATTCT----ATAACATACGTACCATAAAAATTTTCCAGACACAGTAAATAGAGAAAAAATAACCCAGGAAATTAAAATACTTTCCCTTGAATGTTTTCGAGTATTCAATTCTTTCCTAAAGAAAACCAAACACAAAACATGGTTTTTAGTAAAAGGCAGAC--ATTTTCTATAAAAGCATTCCCATGCCTGTGGCTGAGTCAATACAGCATACATGATAACATTAAGAGAGGCTACTAGGGGCCAACCTGCACGGAGTGCTGACTTTCAGTCAGAGTAC-------TGcacta----------------------cccttatgaaatatgctgtagaaccttcaccttccagatgggagactgagtctcaga---------------------------ggttaaa-------caactcgg------------------------------------------------aaaaggttaGGG-------------TAGTCTGCATTTAAACCATACTGCATT------------------------------------CTAGGT-----------------------------------------------------------------------------------------------------------------GTGGT--------------------------TGGCATTC-------------------------------------------------------ACACTCAGGAGTGACTTCATAAACAGTAAGCCTCTTTTCTAACGCCACTTGGCTTACACAGAAGC-----ACTGCCTGCTCGCAGAGGACTGCCAGCCCATGAGGTCTCAT---TCTCTCTTCAACCGTGTTGGTAAAG-----CAGAGCTGTCTCCTCACTCTGTACCTTTGTAGCATACAGATCAGCTGTTTCCAGAAAAAGCTGCCTGCTCAGTTCTTCCAAAGCATCCACTTCCTGTTGGATAAGAGTCAGATCTGGCAAAAAGTGGGCATCAAGGTTTAAATCACAGAAAAGTGTCAGTAAGCAGTGGGAAGAAAGGTTGGATTTGCTCAGCTTTGTA-------GGGAAGAAGCTGGGAATTGCCTGCATCTTTTAT-TCCCACCTCAG-----------------CACTGCTTCAGGGCAGTGTTCCCAGGCTGACACAGG-GTGAAGGGGCACC----------------CCACATGCATCTGCCAGCTG--------CTGCTCAGACATATGATCTCACGGCTAGTGTTCTGCTTTATTTTTTTAATATCAAATTCAGTCCTCAAATGGTGTATACGCCATGACCCACAATTCAGC--AGTTTCATGCTACCTGA-CTGATAGATACTGTGCCAGGAAACAGCACACACAGCactgtggtcagagcctcaccgggctgggctt-taggcaatgccttcttt---------------ctatcttatttta-tgctcccacaatcccatgagacagctgtaacccatttctcagacaaggaaa--gaggctcagaatgttaaacaacttgctccatgtcatctcatcctgcatctaataggcgtgcat----agtgctgtctgcc-tacacaaggccccgtcttttccactgcCAGATACTAGCCAAGTTTCCATACCTCAGTCAGAAGTGTCAGTATTTCCTCACTAAAGAAGCAGGAGCTCAGAGAGCTAAA--AACT----CCATACT---TTGTTGATACCAACCTACAC-------TTGGGTTTTTAAGAATTTTAAAGTAATAAAGATAGTAA--------GATAGATAGTCCCAG----TAATTCAAATCTTCCTC-CCTTTGTG-------------------AAATTAGCAAGTACCCTTCAGGTCCTCCCCTCAACAGTGGCTACCAGCCAGGCCGAGCTGCTCTTGAGAGGTTATGCTTCCAGTCCTGTCACTTAGACTCTTCCTGGAAACAGGAGACAGAGCACTGCTGCAGGGTACTTGTTTTCTCTAAAGAGAGGGTGGATTTTGCTGTTAATTGTCTGTATGTGTGGGGGCGCATA------TGCAGACGAGTGTGGGAGCCCTCAGAAGGCAGCTCCCTAGGACTGGGGCACCTATGAGTCACCTGATACATGTGCAAGAGCAGGCCCCTCTCCGAGCCTCTGAGCCGTCTCTCCAGCCCCCATGACTCCTTTTCCTTTCTCTGCCACAGTCACCTGG-CTTTCTCTG-TCTGATTCTTATCTATAGCC-ACGTCAGAATGGT----GTCCGGATCCATCACAATAGC-CTGCATCCTT---CTCCAACT--------------GACTTAACTGGTGACAGAGACAGAAGAA------CATCTCA-------GCCCTGACAG-------CCTGTGGGAGGGGACGGGAGAAGAGGGAGAAACACACAGGCTTGGTTTTCTCTATGTGGAACTAGT----CAGCCTCCAAACCAGCAGGGCCAGGAACAATCCAGTAACC-----------------------AGGTTGCC------------------------------------CTGTTTTATTTATTT----------TTTTTAAGGGGGGGGGGGGTGGAG-----------CTGCTTGAAA--------TCTGTGTGGCATTAACTGGG-----------------------TTAGGAATGGAACCTTGCCACCACA------------CTGTTGTAGGGAGTCACTGTGCTTTGTGGTCTTGCATCTGTG---GGTGACAGAACAGCACAGCGGAACAAGTTATGAAGCTgaggccatagttctgttcctacacttgccacaaaccaccgtgtgacttcacctctctgggtctattttctcatctgtgaaatggaaagaatgatctgataggttcgctccagctcagaGACAACGCTTCTGCAGTTAGGTACAAGTGTAGGGAAGATGAC---GTGCCCACTGGACCTCCTAGCCCAGTGCTGG------CTGG-CCCTGATGCAGCCAGGCACCCTAGAGGGGAC---------------TGACTCAGCCCCTGGTGCAGAGTGGAGGAGAAGAG------------CCAAGAAGAA-----------------GGTAAAGGATACTTTCACTTCCCGGGGCTGAGGCAGTAACGCTCTTCAGCATGCCCCAGAGTCCCGACGGCTTGTTCTGCACATCCCCTCTCTGGAACATGGTTCTCCGTGCCACGGCCATTCTGCAATACAGAACACA-GAAGCCTGAGCAAAGAA
s HiC_scaffold_1 106421238 3083 - 233722169 AATTCTTGACAAAATATACTTAccatgaaaattttccaaacacagtaaatagagaaaaagtaacccagaaaattaaaatattttcctttgaaagttTTGGAATATTCTATTCTCTCCTgaggaaaaacaaacaggaaatatAGTT---AGTTTCATGTAAACTTATCATCAACAAAAGAGGTCCTCTCTCTATG----AATCACTGTTGAtcataataaaacagtaataGCAAC-------AGCCAACATTTATTGACTGTTTAAGCCCAGCACTAGAACAAACATAGGCATTAGCTACTTTAAACTTCATGAAAACTCTTATAAAATATGTTCTAATATcttaattttacagatgaaaaaatgaaTCTTAGATCAATAAACTTGCTCAGAGTGTACACTGGTTTAAGTAGACTCAAGTCTGTGCCCAGACCTCTACTCTAAGTAGCTACCCTTATGAAGTTACCTTTAAAAAGGATTAAAGCTTACAATCTTGATAGATTGTGCATAAATTACACTGTATTTCAGTTATATGTAGGAAAGCTGGGATATCTCTTGATCTAGGTCTCTTAAAATAGGGCAAAACCATGACAATAATATTACTGTTCTCCTAAAACTAATTTATAAGGGAATAAAAAGAACCCAAGGAGCTATTATCTTTATCTTGGGTCAGTGGGAAGTGGTACTACATTTATAGATGTTGAAAATTCTGATATTCCTCCAATTTCTATTACAGACTGTGTTCCTTTAAGAATTTTGCCAGTGATAGAAACAAACCCAGGAGTAATT--------------CCTCATTCCCAAATGCTCATGGCTTATAAAGAAGCTGTGAGGTGTCTTTT------GCATTGCCTGATCATAAGATACTAAAAAGTTCTCTTCAGTCACATTGGTAAAAAATATTAGTTTAGTTTCCTTGCTCTGTACCTTGGTAGCATATAGATCAACCGTTTCCAGAAAAAGCTGCCTGCTTAGTTCTTCCAAAGCATCCACTTCCTGTTGAATAAGAGTAAGATCTGGCACAAAATGTACATCAAGGTTTAAATCACAGAGAAGTttcaaaaaatagcaacaaaGAAAGC---ATTTGCT----TTTGTATATTATGTAGCAGAACCTAGAAGTT-CCTGGATTTGCAGTATCCTGTTTCAGATCCAGCAGTGCCACTTCACCACATCAGAGCCATTTTCCCAGCCTGACACAGGTATGGAAAAGCTTCTCCACTGAGAGTATCATCACAATGAACTGTCACTTAGTTTCTCCCAACCCAGACAGAtggttttctgtttggt-ttttactttaTCTATT--AAATCACACACAATAC---AATAATCTTT------------ATAATTAAGCATAATTTTCTCCTACATTATCTGAAATTCGTTTGGTAAGGGAAC--------TAGTCTTGTTAACA---------CAGGCTGGGTTTACAGACGTTACCTTCTTTAGTTCTGTATAGACATTCTCTTCTTTTATTGTTTCAACAATCCTATGAGATAGGTGTTACCTATTTTGCAGGTAAGGAAAGTGAAGTTCAGA--GTTAAATGATTTA----AAGACA--------CACAACTGTCAGGTGTGGATGCGAAGTGAGATCTGCCTTACTCCAAG-CCTGTTCTTTCCACTA--AGATAT--GCTATTTTCCAAGAACTCAGTAAGTAGTATT--TGTCTCCTCATTTAGAAAACAG--ACTCAG---GTTAAATCAACTGATGCAATATTAACTTATTGA-AGTAGCTTACATGCACGCATTTGGCTTTTAAGgatttttaagtaataaaaagA-TAACCCCTTCTAAAAGAGAATCACTGATTTTAATCCAAATCTTCCTCTTCTCTGTGAATTTTCCTATTACTACCAAAATCAACAAGTATCCTT--AGTTACTTCTTCAACAGTG-----------------GCTGTTCTTGGCAA--TATCCAGACAATC----------------------AAACAGTAGG---------GCTGA-----ACTAGTTATATCT------------GTCTCTCCTGTGATTAGACAGTA---AAGAGGTTACACAGTCCTCTACTAACCATTCT---ATCACTCA----GCACTTCGCTGGGAGTAG------------------AAGACATG-----AAGTAAAC-----------------------GTTTCTGGATTAAataactcctttttcttttactgcCATGAACATTTTGCCTTTCTTTGAATTTAGTCTTATGTGAATCTGATACCAGAAGGACATAAATCACAATTCAT-ACAATTGCATTATATTCTTTTCCTCCAATTCAAACAAAAGGGAGTATTTGCCTAGT-CCAGAGAAGAAAGCAAGTATGTGTCTCATTGTTAGTCCCTGACAGTTTTAACCTCATAGCTTGGGAGCCATGTAGAGATATGGCCACTCAA-----------TCTA---GGAATTAGTTCAACACACTTC-AACTAGCTAGGCCAGGAACAATCCATTAACCCAATCATCTTGACTTTTAAACCAAAGTTGCTAGAGAAgcagatatttaaaatttgtttaggaacacacttttttttttttttgtctttttcgtttttatcggtaccagggatcgaactcacgactgcctgcttgcaaggcaggggcttatgccgc-tgagctaaatccccagccccaggaacacACTTTCAAAAGTGGGCACTTATCACCCCAAATATAAACCATTTATTTTATTGAGCCATTATATTTAGTGGTATTTCTTTAGGGTTTGGGAATATAGTAGCGTAGTGAAAAGAACTATGAAGAGGAGACCACagttttgtg-------ttgctgtaaaccACGGTGTGA---CAACCCTCGGGGTc-aatttctcatctgtaaaatggaaatgctGATTTTTTAGGACTTCTTTGGcttaaagaaaatgactttctgaTCTTTCATGGGTGTTGGAAAGATGACTTAATACACATTATGCTTTCTAAGGCTATGCCGGGCCAGTCTGGACTCTGATGCAATCAGCCACCTTGGAAGGAACTATTCCAAGATTGTTTGGTTCTGCCCTTGATCTACagcataggaaaaaggaaaaaaaacaaaccaaaaaaaaaaaaaatcaagcagaacgATAAAAGATACTTTCACTTCCTGGAGCTGAAGCAGTAACGCTCTTTATCATCCCCCAGAACCCGGATGGCTTGTTTTGCACCTCTCCCTTCTGGAACATAGTTCTCCGTGCCATTGCCatcctgaaataaagaaaatacaaaatctcATCAAGGAA

a score=18975
s chr3            96889895 1141 + 160039680 GTGCCAGCCTCACCTTTTCTTTTTGCTTATGATCATGTCCATGGTCTGCAGCAGTCGCCGTTCCAGGGCAAGAATATCTGTGTCAGTCACGTTCCTGCAATGAGCAAGAAATG--AGTGATG-TCTGGGATCCCATGCTTGGGCATCATA-AACTCCGTAGAGCTATTTTTCTGTTGTCCTAGTGCGGCAGTGGGTGCCCTGTGCTCAGCCTTCCTTAGCTTTGACCTAGACACATTTGAAATAAATGCTTATTGGCTAGATCATATATTCAATCTGTGGGTCGTGACCCTCAGGCAattgtctatctccaaatatgtttacactactatttaaaacaatggcaaagttacagttatgaagtagcaatgaaaataatttaatggttgaagctcctcaccacaagatgaggagctgtcaggaaagtggagaaccactgggctagagagaaggcttggggttaagagtactggccactgctggagaggacctggcttcccagtacctggaagtggctcacagatgtctccaactccagttctagagcatctgatgtttttgtgggtaccaggcatacacacaatgcacatacatacatagacaaacactcataggcgtaaaaattaaaaaAGATGCTTAAGTTGGCATGGTCTCCTACTATTTGATGTCAAGGAGGAACTAATTTCCTGTAGTTGGGAGAAGCTCACACTGTTGTCCACTGGAAAGATGTATTTAAAGAGtg--tatgcaaagggacataaaattcgccactt-agaaaataaatgagccagatgtggtgg------cacatgcc-tgtaatc----------------ccagtgttcagg------------gggttaagataagagaatctaaa------------------------ttaaaat-caactaag-------------------ggtacataTTCAG----TAACAGTGAAAAAGGAAGGAGATAAAGTATGTGTTACCTGAGGAAGTAGGACATGTATGTGTACGGACAGTTGACAGCACCAAATCCGGAAAGCAGAGCCATGAGCGTCACCCCGATTACGCCTACCCGGCTGATGAGCTGCTCTATGGACAAGATCCCTGAAAACACCGATGCACGTTAATACTGGGCACTACACACAGAGCGGCTTCCATCTGTGTCACGGAAGCAAACACTGCTTACAACATCAACCGGTAT----------CTTATACAAGCCCATT
s HiC_scaffold_1 106429529  976 - 233722169 GTGCTAgtcttaccttttctttttgcttatgaTCATATCCATGGTTTGAAGCAGTCGCCGCTCTAATGCTATAATATCTGTGTCAGTCACATTCCTATAAGAAATATAAACTGTTAGTAATGCTTTGAGCTCCTACCCTTGGGCATGTTACAAGTCACCAGAA------------------------------------------------------------AAACAAGTCAC--------TCACCAATTATTAGCCAG----------TAATTTAAGG------ACCTgc----------------------------------ctttttaagaaaacattaaaatgaccATAATAAGCTA-------AAATGCTCTTAC---TGATATTTCTCA---------------------------TGGCTGATTTTTG----------------TGGGATCTAGGGCAGCAG----------AAGGTAACTGGTTCTCTTATTCTT--------------------TCTCAGCTTAGATCCAG------TGACATTTATG---------------------------ATATAAGTTTAAACATACTTTTAT----GTTATACTT-----------TTAACTTGGCATTGTCTTCTACT--------TCTAGAAGGAACTGATTTACTAAAGT-GGGAATACTTCATAGTGCTGCCTACCAGAAATGTGCCTTTAGAAAGTGAagatgagggagggcacaaagtTTTCcacttcaaaaaataaatca-----atgtagGGAAAACAACACAAGCAATGTAAGAGGTAGGACTTATTTAGCAAGTTTTTAGGTCACTACCCATAGGAAcagaggaagagaataaaaaggcAGTATCACAGATCTGATATATTTGAAATGTAAGTAGGAAAGGTGGTAGCACAATATGACATATATTCAAAtaatgaggaagaaaaaggaaagagacaaaatgcACATTACCTGAGGAAGTAGGACATATATGTGTATGGGCAGTTGACAGCGCCAAATCCAGAAAGCAGAGCCATGAGAGTCACCCCAATTACACCTACCCGGCTGATGAGCTGTTCTATGGACAAGATCCCTAAAAACATCAAAGCACATTAACACCAGGCAACATAGATAAAATGGCT--CGTTTGTACTGCAGAAAGAAATACTACTAGAAACATCAactattacacaaaattcactCATACAAgtcaatt

a score=14503
s chr3            96897296 740 + 160039680 ACACACTTCCCGGAATGATGCAGGACTTGCACTTACCTGCTGTTCAGAACTCCCAAGATCTCAAAGATGATAAGCTCAAACATGGTGCATGAAAATGCAAAGGTCACGGAGAAGATCACCTGCACCACATACTGACGCACCT-GTTAAAGCCACATG-----CACAAGTCAGTCACGGCATTGCTAGAAATCCTTAACTGAGAATCTTCTTTTGATAAGTCAGAAAACCTGTGTTGACCTCCCCAGTCTTTGAAGAGGAACTTGGGTTAAATTATGGAAGTGGGCAGCACTTTCGAATCATGGCTGCCTCTTTCCTGAATCTTCTTGTGGTTGGGGAATTTAAAGCACAAGAGGATGAAATGACAGGGCCATATGTAGCAC-TAAATTCCCGATGTCAGGGATTAAAAGACAACAGATCTGTATGCATGCTTAATGTTAAAAGGAGTTCTTCAACACTGCAGAGCTTGCATCAGCTCTGGAA-CTTTCCTGAGATGCCTAACAGTATTGAGCAGAACAGAATCTCTATCTATAATTGTGGGCTCTTCCAGACAGCTCTCCAAAC-TCCTAGGGAGGTTTACTGTAGAACATCTTAGAAACGCCCCAAAG----------------TGCCTGGTAACTAAACAGTGAAAATTATATTAGAAAATGTCCAGTATAAGATATGGTTCTGTTCTAAATCCAAGACTTTAAATAAGAACCAGACTAGCTTTCGGATTTGGGTATTAACTTAAATTTGAAGGCTGGCAATT
s HiC_scaffold_1 106441574 550 - 233722169 ACACATT----GGAGTTATTCAGTACTCTTACTCACCTGCTGTTCAGTACTCCTAAGATTTCAAAGATGATAAGCTCAAACATGGTGCAAGAAAATGCAAAAGTCACAGAGAAGATCACCTGTACAACATACTGCCTCACCTAGTAAAAGCCAAAAAGAGACTAGAAGTCAGTCATTTCTTTGCTTGAAATTGTGAGCTGATAA---------------------------------------------------------------------------------------------------------------------------------------TTAAAGCacaagaagatgaaaaaaaaaagtcagaagtaTTACATGAATTCCTAACgca--------------------------------------gttaaaa------------------atattttggatcaGTTCAGGAATCTTACCTGGGAAGAGTTAAAGTATTGAATGGAACAGAATC----TCCAGAATTCTGAG--CTTTCTGACAACTACACAAACTTCCTAGGGAGGTTTAATGTAA-------CTGAAATGGTCCAAAGGTAATCTATAACCATTGATCTTATtactaaataaaaaga-----atcagaataCATTCAGTCTAGGGTGAAGACT--TTCTGAATCCAAGGCCTACAATAGGAACCAGGTCAGCTTTGAGATTTTAATAGTAACTTAAAATGTAAGATTAGTAATT

a score=14412
s chr3            96898355 440 + 160039680 AACCCTGAACACCATGTGCAGTTTCATGACTGCACACCCTTGACTGGTGCAGGTTTTCTATGTGAGAAAGTGAACACATTTTTTTTTT--------TAAAACGAAACCATTTTTCT-----TATTCCATTCTA--------------AATGGTTTCTTCTCACCTCATAGTCCTTAAACAACTGGCGCATGAAGAAAAGCCATCCGAATCCAAAAAACAGTATCTAGGGTAGAAGAAAGATAAAATGTCAAGATACATCTTCTTTTGACAAATGCCTTATAGAAACTTTTATGATAAAATGTCTGCTAACTAGACAGCTATTTTTAGAGATTAAAAATGAGATCCACTTTTATCATTGGAAAAAGACGCTT-ACACGCTCTTAGAATTTTTAAATTATGCATTACATAGAATGAGTTTTAAGGCAGACAAAAAATGGAAATACATATATTTTCCCATAATGTTATGAA
s HiC_scaffold_1 106442737 444 - 233722169 AAGCCTAATCATATTCTTCAGTTTCATAGTTACA-GTCATTATTTGGTAAAAACTTGCTGTCTTGGAA-GTTAACATGATCTTTGTTTAATATGGGTATAAccgtgtcttctttttaaaagtatttcaattCATATAGGTAGAACATAATGATCTATTCTTACCTCATAGTCCTTAAACAACTGGCGCATGAAGAAAAGCCACCCAAATCCAAAAAAACATATCTaaaggagaaagaacaaagaatgtCAACATACATCTT--------------ATTAGacagtattttataataaaagatc----ACCTAGACA--TTATTTCAGAGATTAAGGATGAAAACCACTTATAAT-TTGGAAAGAGATGTTTGAAATGCTCTTAGATCTTTCACGTTATTCATGCCATAGAATGTGTTTTAAGTTAGACAGAAAA-GGAAGCATGTACATATTTTCCTAGtcttatgaa

a score=50860
s chr3            96902594 3181 + 160039680 TGGATGACAGTTGCTTTTATGAAA-TGACTTCAAGGTTGGAAGG------GTAGATTAAAAAAAAAAGACAATGGTTGGCAGAACAGTTAGCAAGAATTAACTGGGAAAGACACCTCTCTTGGG--ATTTACTCATGCTTCTatccattagccaatacttcttagtgattactgtgtgccaagtgctggaggtagattggtgact--------------gctgctctcaaagggcag-ataacttatgaaagagataa-cgagtaactataagacagtatggcagcccag----aagggacatgagtgaagggcattatggtgacatgaagagaaacactggtctaacttggttcagaag----tatttggatatccaagctgaaatgtgaaggctgaacagcaatcagctggccaggagggagaggggcaggtatgagggggagaattccataaaaaga---cactgtggaaatctggaggcacgatggcacagccaggttaagaaactaaaagaagtttagGAAGTCTATACAGTATAAAAAACAAAATGAGAACATGGTGAGTGAGACACAAGGCTAAATAGCCAAAAGTCAGGGTCCTATCGTAAGCCGCTATATATGACATGTTAAGGACTTTGTGCTTTATTCTGTGGCATGAACAAAAATGTCAGAGGTAATAAGTTTTATAAAGTTTAATTTCTTTTATTATTtgtgtgcttgcacatgcgcttgcaagtagaaggcaggggtcaatttttgggagttagttctctccttccattctgagcaccaagatctaactcaggtttcaggcttgggcagcaagtgcctttatccgctcagtcatctcattggccTGAGGTGAGAGTCTCTGATATGAAGTTTCTGATTTCATACCACATAAACCTTCCAGTTCATATGGAACAGGAAAAATGGTGCATGCATTGCTTTCCTGTTAACCACATTTCCCTAAGGCCTTACTTGGCCTCCACTCTG--CCACCAAATGGGTCAGATGCTAGGGAATACAAGAGAGAGTAAGAAAGATACTATCTTGGATTT-------------------------------------CATGGGGAAG---GAAAATAAAACATACATGAGAAAGAAAGTGGCTGGAATGAAAGGCCCCTTTGGTTATTGAT-AGGGGACAAGTTACGCCTCCCTGTGGTGACATTTTCATTTAATTAACACCTCAATGATGGCAAAGTAGCCCCAAAACATATAAAGACAGGGAACATTTGACGCAAAGGATTGTTTGGGTTTTAGATTTCAGCACTTTGGTTGGTTAAATTTAATATTTCATGTGGATATATTTGTAAAAGTTAAAGAT-TATAAATTTAAGGCATAAAAGTTTAGAAAGCCATATTCTTGGG--AACTTTTGAATTATGTTCATGTTAA---TCTCACAGGTGAAAGTGCA-TGGAAATTTTCTAATTATACTCTTATTTTTGTACTCTTTAACAAGCTGGGAATGGACATTTATATTTACCTGTGGGGGGAAAAACTCTTAAAACTTAAATGTTTTTTTTTTTCTTGAATTGGTAGTAAGGCTGAAAGCCACTCTGTGTCAT-----TATCAAGGACAACAGGGGAGGCGCAGAGAGATTTGAAGCAGAAGGCAGAGTGTCCAGAGTTTTGTGTATTTACAGATTTGAACACTATGCTAGCAACAAAAGCAGTCA-AATGTACTTGAAAGGTATTAATTTTgaaaagggaaaaatggttactgtattagagtggtgaa---atgggttggctttttcttgttttacattttcttaagtgttgttaCCGACGTTTTCAAGAGGTGAGGGCAATGCTCTGCTGAGGGAAGCATTGGGATGCAGCTGCACAAAC------CCTAAATTCAAGGATGTACCTCAC---TTACGTCCCTCAGGGGAACTGTTTCTTTCCCTTGCCATTTGGATGCGATGAAGAGAAAAAAAAATCTT---------------TTACTGGAAAGATGCGGGG----TGAGAGCGATAAT-GCAAGCAAAGAAGCGTCTGCAGTTGCTTAGTGAGTGCTTGCATTTGAAAGTGGGTACATGGCTATGCACAT--------------AAATACATACATGA---------TATCAGGGCTATCATAAACACTTGGGGTGGGGTGGGAGGAAACCCTGGAGAGACACGACTGATGGGAAAAGCAAGAGGCTCACTAGACGAAG-------CGAGCAGAACTTG---CCAGTG---GTTTATACTTCTTCGGTTTTGTTTAACGGTAGATAGAGG-----------------TGGCCAAGTGAGAAGAAAACGTGGGTCGACCGCGACCCGCAAAGAGTGAACAGCAACCAGAGAACGAAAGATGAGGTGTCACTGCACAAAGGAAAGCTCAGACTTGGACCTCGCGGAGGCAAA--CGTGTCAGCACCCGGATCC----------------TGCAAAGCCCATACCCGTCC-CGGTCCTCAGCCCTGGTAGGCACGCTGCCGTGGGCCTCCCGCCGGGAGCCAAGCTTCTCCAGGCTCCGTGGTCCGCGGAGCTGCCCGGAAGCCTCGGGGCGCCGTGGGTACTGAC-----CCCCGCATGGCACCGGCTCAG--CGCTGGGGCCAGC----------------------------------CAGGCCC-------TCCCCAGAGTCTGGGGAC--GCACGCTAGGTGAGTGACAGCACCACACGTCAGCCTTCGCCACCCGGGCAAG---GGAGCGGGCT----------GAGCAAATCCAGGTTCTCCCAAGG---------CTCACCTGGGAGGTGATCATGATGCTGGAGTCGATCAGGAAGCTCATGGCGAAGCCTCGGGAGGCCCATGCCCAGCTGTCTACCCCTCAGAG--AAGCCGCGGCTTAAGACC--------------------TGTCCACCTGCTGTGGTAGGCGGCCTGGCCTGGCGCGTG-----CTTACGTCATCAAGATGCGCCCTAGCCAGCCAATCAGCGGCCGCATTC------TCCGTTT-----------------------------GCCTGGAAGGTGAGG----GTGGGCAGGGCTGGAAGCCGCTGGGTAGACTCAAAGCAGATGTGTTTCTTCTTAGTAGGC-------ACAA----GGAGGTGAGGAGAGGTAACAT---------------------------------------------TTGCTTTAAGTGGCACTGCCattaaatataatgaaattatttttatatttttCATAGCTAGAAACACTGGGGTGAGAGTTGTGCGAGGTCCTCAGTGACATTCCCAACACGGCAGAAAGT----------AAAAATAAGTTAACA---TAGCGAGTGAGGCTTTAAGTCAAGTAGTGTGTTGCAGATGTTACAGATTTTACTTGGTTTAAAAAGCAGTGT------GACATCTATAAGCGAAAGGATGGTGGACAGGAACGTAAGAGTCTTCT---CAAACATAG----CTAAGTAAATTTCTGATATGATAACGTCAAAA
s HiC_scaffold_1 106446532 3301 - 233722169 TGGATAATAGTTGCTTTTACAAAAATGACCTCTAGATTGAAAAATTTGCTATAGAGTAAAGAAAAA--------GTTATTAGTATAGTTATTAAAGACCAACTGGAAAA-ACACTTCTGTTGAATCATTTATTCACCCtttactcattcaacaaatatttcttggtGCATAATATGTGTCAGGGTCTAGTGATAGAATAGTGAATAATAAAACATGAATGCTGTTTTCTAGGAGTTTTATAATCTAAGGAGGAGATAAACAAGTAATTACAAAACAATATGGCAGCATGGTTATAAGGGAAGTGGGTGTAGGACATTACGGCAGCACGTACAGGAATATT----TAATCTAGGTTAGGGGAGGCTTCTTGGTTGTTCAAGATGAGATCTGAAGGTTGGACAGGAAT----TTGtcaggagaaagaagggaagagatatTGGAGGAAAATGTCTAAAAAGAGAGAAGAGTGGAAATCTAGTGGCAT-ATAACATAGACAGGCTAGGGAACAAAAAGAAGTTTAG-AAGCCTA-----------AAGTGAAGTGAAGATAAGGTGATAGT----CAAGACTGAAGAGCTTGATGCTAGGGTTCAACC-TAAGGAACTCTATAAGCCACATTAAAGAGCTTGAGCTTCTTTCTGTGGTGTGAACGAC--TGCTACAC-TAAGATGTTGTCCAAGGCTGA---CAAGTTGAGATATGTGTCCTCAGACTTCTGATTTCACTTCAAA-----------------------TAAGCCTTTCAGTACA-------CACACAGA-------------------------agcatgtgcgtgcacacacacaag--------------gaagtgtgtgt-----gtgtggggttt--GCTTTGAAGGTAAATAATCTACCTAGT-------------AAAGAA-------------------CTTTTCACTAAACTTAACACAGTACTTTCTAGGCTTCCACTATGGACCAGCAACTGATCTAGACACTAGGGAATACAGGAGAGA-----AAAGATGACACTTTGGACTTAAGTGTGTCTACAGATaacaagcaaacacacaaaaaacactgataaatgtgaaaagaaaactaaca-gAGAAAACAGGTGGCCAGAATGAAAGGCTACTTTTGTTGAGGATTAGAGGTCAGGTGAAGCCTTACTG----------------------ATACCTAAAAGATGGTAAAGTAGCCACATAA-GTACTTGGACAAAGAACATTTGATGCAAAGGACTCTTCAGTTTTTAGTTCTGAGCACATTAGACAGTTAAACTTAGTATTTCACATGAATATGtgtatgaaaattaaaagtatataaaattaagTCACAAAAGATTAGAAAGCTACTTTCTTGGTTCAACTTTTCACTTATGACCATGTTAAAAATCTTAGAAGCTGCAATGCAATGCCAATTTTCTATtagtattcttattttaattctaaataa--------------------------------------aaaaa---ttgaagcttaaatattttt------cttgaattgGTAGTAAGGCTAAAAATAACTCTGTATTGTATTGTCATCAGAGGTAAT-GGGAAGCTTTAAAATGGTTTCAAGAAAACCACA---TGTCCAGATTTTTGTACaccaaaatatttgaata------tatcaataaaaatagacATAATATAAATGATAG---TAAATCTTAAAAACGGAAAAA-GTTAAGTGTATTAGAGTGGTGGGCCTATGAAT-GGCTTTTCTTtggttcat-tatttttaaattttataa---aagttttcaaGAGG-AAGTCCTGCACGCTACAGACAGAAGCATTAGGAGGAAGCAGTACAAAAGCGGCATCGAGACCCCAAAATTTAATTTACACATTAAG-CACTCAAAGgaattatttctttcacttgtcaTTTG--TAGAACGAATAACTAAGAATACTTTAAATTATTGTGTAATTTGGTGGGGGAATCTGGAGCATCTACAAATGGTAACAGCCAGCCAACAACTGTTT------------TGACTGCTTTCATTTGGAACCGAGTATACACGTACGGACAATACAGgatcttaaaaaataaacttataagCACTTAAATATCACTGCTTTGATAAAAGCCAGAGAAAAAATAGA--------CCAACAACAAATGAC--ACGGTAAAAGCAAGAGGTTCACTAGATGAAGGTTCTAGAGGGCAGAGAGTGTGCCTTATGTATGTGTGTACTCCCAGAGCTTTACAAAATGGTAGGTAAATGCTGACTATGAATGAATGTGCCCAAATGAGAAGAAATGATAGTCGGAAAAGGACCCGAAAAGGGTAATTAGCAAGTAGAGGATAAAGTGAGAGGTGTCAGTGCGTTCACTAAACCTCAATACTTTACACAAGGGAGGCAAATACCTCTCTGCGCTCGGACTCAGGATCCGACAGGAACTGAACAGGTCACACGTGTCTGCAGTTTTCAGCCCTGATTGGCGCGCCGC----ATAACTGCGCCCGAAGACTCACTTTCCCCAACCCCTGGTTCAGCAACACAGTCCGGAAGCTTCGGGGAGCTTTGGGGCCGTTCGCTCTCCTCTCAAGGCCCTGGCTCTGGACGCCGAGGCCAGCTTAAGAGAACCCGAGCGGTGGGAGGTGGATGCAGCAGACCCCACCTTGTCCTTGGGTTGTGGGGACTGGTGCGGCAGGCGCGAG------CCGCAAGAGAGGATT-GAAACCCGGGCCAGCCCGCAGCGCGTTCGGGAAGGGAGACCCAATGAAGGTTGGGGGAGGAAGTAGGTAACTCACTTGGGAGGTAATCATGATGCTGGAATCGATTAGGAAACTCATGGCGAAGAGTAGAGAGGACTGGAGCC-----TTCACTGCCCAAAGCCATGCCACG--TTCCGGCCACCACCCCATCACTCTCAGGTAGCCGTCTCCAAAGGTCCGCGGCCTAGACAGTCGCGCTATAGCCTGACGCCATCAAACTGCGCCCCAGCCAGCCAATCAGCGCTTAGATCCCGCTCTTCCGCCTCTGGTTAGGAACCAGCTGGGCTGTGCCAAACCAGGTAGCTGCAGCTCCGGAGGCGGGGCTAATTAGAGCTGCTTGGGTTGAGAGTGGCGGCATTATGGTATTGCGgactgaaaatacaaaaatgaatgtAATGCAAGGTAGCATTTCTATTTCCGAGGTCAAAACGAGCGAGGCCTGACACTCAACCTCTTATTTTCAGTAGTAAATCCGCTAAATGTAACGATCATAATAAAATGACGTTAACAGTT------ACTGAGCTGGGGATTCTACAAGA-CGAGGGTTGAATCCCTAACACcgcaaaaaacaaccaaaatgaacAATCAGTTATTATTCTAACGATTGAGGCCAT-AGTCAACCATTATGTTCTAAGTATTACAGATGGTACTTGGCTCTACAAACACAATCAAACAGTTAACTACAGACAAGGGAAAAGTGGACAAGGAAGAGTGAGATTTTTTGGCAAATACAGTTAACCAAGTAAGTATCTGatgtgtcaaaaacaaaa

a score=7042
s chr3            96905855 233 + 160039680 taggccaaaggacgagaaattacatgaagacagattttaattcaaaataa----TAATTACGTAGGAGTCTTAAAGGTGGGCTA-TGTTAGAAAGTAGTTTCCCCCTTCCCA-ACACAGTCTGAGTGGCTGTGGCTCAACTACAAAGTGAATTATAATTCCTTCCATTAGATACTCCATTTATGAAGGCTTAATATACTACAATGGGACTTAGACTTTTCCCACTAGAACCCTAGCTAG
s HiC_scaffold_1 106451123 232 - 233722169 TAGGGCAAAGATTGA-AAGTTAAATGA---CAGATTTTAATTCAAAAGAAGGAGCAACTCTTTAGGA--TTTGAAGATGGGTTAGTTTTAGGAAGCAACTCCTCTCCCTCCACATACATATTATGCTACAGTGGCTCAAGAAGAGACAGAAACACTATTTTATCCATTCAATACTCCTTTCATAAGAGCTTAATACGCTGCACTGGGGCTTATTCTTTCCCAACAAG-ACCTTAGTTAG

a score=10200
s chr3            96906706 569 + 160039680 ccagatagcacaC-AGCAC--AAACTACATATCAAATACCAAATACCTGTACCAGAGTGCCAGGGAGCTGTGGAGGCTGCCTTACCATGAGAGTCTCTTAAATCACAGAACTCTGTGTTCCTGGTCCCATCTCTCAGGGAAGCAGATAGCTGCCTACAATGTGGCACTCAACTGTCATTCAAAGCTGTGGGATAGTGGAGGACACTGGGAAATTGTACTTGTATAATTATTATGCCTAACTAATTTGATCTATAGGATTTGTGAACTTAAGTAAGCACACACAGAGATGAAATTTAAAATTGAATATGTAAGTTGGGATTGATACGTGAAAG----------------------------------------CAACACTAGGGATTG-------------------------------------------------------------------------------------------TTCTGAACCTCTGGTCACCTATCCTCTGTGCCTGCGTGGAACAGAAAGTGCTTCT------------------TGCTCTAAGACTAACCACCTTTCTAGGAAGGTGGATGTCGGCTTGGCATTCACTCATTTTAGATAAGTAC-CTACCTTATCG-TGGCGTGGGATTTAACATCACGACTTTGGCTAGACAGTCAGACAGGAGTGCAATACTGGTGTATTTTGAAGTCTGAGATACTCGGTATT
s HiC_scaffold_1 106455627 685 - 233722169 ccaggcagcACAGGAACACTGGAACTCC-TATCAAGTATTCTATCCCTGATCCATAATACTAGAAAGCTGTGAAGGTGGACAT-CTATAGGGGTGTTTTAAACCAGAAAACTTTGTGTCCCTAGCTGTACCTTGCAAGGAAGTGGATAGATGCCCACACAGAAGAACCTAACTGATGTTTAAGACTGT-AGATTGTGCAGAATACCTGGGGACc-tatgaatataattattattcaaAATTAACTTGATT-----ACCTtttaaacaaaaggga----aaatatagGTGATA-TTATAACTGAATATGTAAGTTGAAATTCCTAAGTAAGAGatgtgcatgttttttttttttttgtcttttttctttttatcggtaccagggattgaactcacggctgcctgcttacaaggaaggtgcttatgccactgagctaagtccccagccctgagatGTGCATGTTTTTACCATAAGAACTATTTTGAACATCTGGTCATGTATCCTCTGCACTTGAATAGGGAAGAAAGCTCTCCTTACCTTCTCACCACTTCATACTCCAGAATTAA-TGTCTTTGTATACTGGTGAACAGCAAGT--GCATTTACTCATTTTGGAGAAGTGCTCTGCTTTATTACCAGATTGTAACGGAACACCATGACTTTGTTTAGACAATCACAAAGCA---------------------AAGTCTGAGATATTCATTATT

a score=81412
s chr3            96912883 3822 + 160039680 [encoded data, 4285 characters]
s HiC_scaffold_1 106472393 4005 - 233722169 [encoded data, 4285 characters]

a score=159221
s chr3            96917538 4084 + 160039680 [encoded data, 4302 characters]
s HiC_scaffold_1 106476437 4139 - 233722169 [encoded data, 4302 characters]

a score=59326
s chr3            96924369 2115 + 160039680 TCACAGGAGCAAG--------CTGGAGCGTGGCGAAAGCTAAGCCAGAACCATCCACTTCCGTTGTCCTCTCTA----------TTGCATTTTGCTTGTGAACATGGAGTGAAACAGTCTAGTACAGATGGAAGATAGACTGAA---GTTTATTGTCAAGCTTCAGCCCCAGGACCACAATTTATTCCTGGAAACTTCCTACTCAGG-AATTGTGGGTAGAGGAGATAATTGAAGCAACAACTTAAGTCGAGTGGCCACAGCTTTCCTAACAGTGATGTACACTTAAGTACCTCCCATCAGTCCTCAGGACAAGCCATGAGCTGCACAAGTGGCTCTCA----TTGAGAGTAAAGATTCCTAAACATAACAAGCACAAAACAAAACAAAA----CAGCATATAGCTGCCAACTCCTTATTTT----------------AAAAAGAAATGTGTCAGATCACTAAATAATGTCTACAGTCTGACTTCACCCTCGATGATTAAGGGAGACAGGCATGTCTTTATGACCACAAGACTTAAAGAGAACATGGTCTCAGAGCAAAGC-CAAGTCTTGGAACAAAACACATTAAACTCGGTGGAAA---GCCACCTCCTCTCCCCCATCGTTGCCGCTCTATTTCTGTCACAGGCTGACAAAATTTCTCCATGAACTAAAATGGGCAGATCTACAGTTTGAGACTCAGAGAATGGAGAATTATTTACCCC--ATGGCCAGGGAGGGACAATC----AGAGAAGTCACA-GAGTCTCTTAAAGTGTCCCAGCTGGTGGGGG--GAGCTCAGATGTGAGCCCTAGTCTTCCCCACTCCAAACTCCAAGGGAATTTCTGGGGCAGCGTGGCCTTGTCCTGGGTTTGAAGAGGCTCG-GAACC-----ACGTAGACA--CCCATGCTTACAGGTTTCTTGAAGCATCAGTGGGTCATCCACCACTCTGCTGATAATGGGAGTATG--TGTGCCTCCATCTTTGGGTGTAGA---GCCATTAGACAGCAGCTCTTGCCAACAGACAACAGAAACCTGCCCCAGGGAGAGCACAGATCCTT------------CCTGTGCCCCGTGAATGAACTGCTTTAACATTGTAAATCCTGAGCATGGGGCTTCCCTTCTACCCACGGCACTCAACAGTTCCCACCTGCTCTGCCATCGCAGAGTTGTGAGTGGGAAAAACA---AACAAACAAAACAACCCGCCTTCCCAAAAAACCCCGTAACTCATGCTCATTTCTGTCCCC-CTGGATTCCTGGAAGTGCGGTCGTTCCTTCTGAAAACATA-AAGACCTGAAAAATAAATCAAGAGCTGGAGTCTGAACAACTCTTTTCTCACCCAACGTATCCTAGCACTCTCCCTTCCAAACCTCTGCAAACTCTTA-------------GGTGAACTTGAAGTTGATCTTGAAGTGCATCCTTCTCAGCCCAATGATAGACCTTGGTGACAACTTTTTTGTCTCAGAGGAAGCTATGTTTCTAGCGGGAGAGCTATGGATGGCCCTGATCATGAGTTGGAAATAAGTGAAGGGAAGGTTATAGTCTAAGGCCACCCAAGGAAAACTTGCC-GTCTGAGTAGCGTCCCACGGAGAAACTGGTGCTGTCTTTCTCTCTTGCTGCTCCGCAGTAAAATGGCAACTTTGGTGTCTTTCCTTTGCCACCTAAAAGCCCACCTCCAACTTCCCTACCCCGCCCCTAATGTGCTGCACGACTGAGCAGATATGACTGGATCTGTCCTGATGGGTGGGTTTTACTGTCCAGCAATATTTTAAGCTCCCAGCCAGACAGCTTTTATGAAGGGAGGGATGTTTGGAAAACAATGGGAGAGAGAGAATGGGAGAGCTGTGCTGGGCACCAGGGGAGGAGGGTGGGGGGAAAGCTGACGTGGGAAAGCTTAGCTGGGGCTTCTGCAGGCTCTAAGCATTTCCCTCAGC---TACAGACCAGTCCTTTACGACAGGAAATCTTTGGCTTCTTGC-AGAGGACAGGTGT-GTAGGGTATTTCCCCAGGCCTTGAAGCCATCGTCTTAGAGACTCTTGGTCATGTAGGGAGAGTAATATGTGACCTGTGTGTGACCTTGTGCTTCAAGTTACACTGAATGAGAGTGATTGGTTCCCTTCAAAGGGTTACATTTCATCCTCCATTGG-GGTTTGATCTTATGACACAACACCTTTAA-TATGCAGCCTCCCT
s HiC_scaffold_1 106482695 2101 - 233722169 TCAGAGTAGCAAGGTATTCTCCTGGAATGGGGAGAAATCTAAACCAAAGGAGgacttttctcttctcttccttaaagagacaacttttattttgcttgtgaaaATTTAGTGAACAGATTTattacagatgaaaaataaaccaaaagagtT------CAACCCTCCAACCAAGGGTGTCCATATATTCCTAAGAAC-----ATTCAGATAATTATGACTGGAGATAATGATTAAAATAGCGCATCACATTGGG--GTATTCTTTTGTCTTATAGTGATACACTTTTGTATATggtctttcagtttttataacaAGCTATGAATCAGGTCAATGATTCTGAGATTTGGATTGCACAGact----agcataa--------aaacaaaacacagtgacCAGCATAAGGTTGCTGACTCCTTATTTTGCTAAACAGggacataaaaacaataaacattagGTCATTGCATAATGACTATTGCTTGTCTTCACCATCATTTCACAAAAGGG--------GATTTTAATACTATAAAACTTAGGATGGGCATAATTTCAGAACAAAATGCAGGTCTTTAAATTGAATAAATTTAAC--AGTAAAAATTTGCTATCTTGTTTACTTCATTACTGTCAC---ATTTTTATCACAAGTGATAAAAACTCCATTTTGAGCCAGAACTGACAGAACCATTGATGGGTATTTG----AGGGAGCATTAGTGACCCCTAATAGC-AGAGAAGAACAGGCTAGAAAGGAAGTTAAATGAGTCCCCTAT-GTGGCTGGGTGAGTGAGGGCAGAGCCACTATGTAATCCctggtcttcct-gcttcagatTC-AGGGATATTTCCAGTATAACGTAGTCTTAT--------TGACGAGGTACAAGAACCTATGTAAGTAGATAAATCCATATTAACAAGTTTCTCAAAGCATTAG-ATGCCTTTTACCGCTCTGGTTGTTAGAGGAGTGTAAACACACCTCCATTCTTGTTTCTAAAACAGCCACTGACTAACAGCTCTTGTAGGCGAACAG----AACTTACTCACTAAAGGTTTATGATTCTTAACCAGTCTATTCCTGTACTCC----ATTAAAAGCTTTAACAGTCAAAATACTGAGTGGGAGGCTTCCTCTACGCCCACGGCACCTAGCAGTTATAACACTCACTCATATTGCAGAGTTT---GCGTGAAAAACGTCCAACACACTAAAAAACTAG------------------------ATACTTGGTTTAGTTTTCTCTGAATTCCTGGAGACATGTTAGTTCAATCTTAAAAATCAGAAGACCTTAAAAAGACCTC--TAATTTTAGTTTGAACATCTTTGCCCTTTTCCAA-ATATTCCAGCACTC------ATAAACTTCTATCAACTCTTATTTCAATTCCAAGAGAGATTTTAGAGTTAGATTCAAAGTCCAGCCATCCTGGACCAAGAGTAAGCCTTAGTGgcagtatttttccttttagaaaaccTGTG-------------------GTACGGTCCTTAAATTTGGCTGGAAAAGAATGAGGGTAAAGTTACAAACTAACATCACCCAAAGAAAACTTGCCAGTATGAGTGTTGTCCCACGGAGAAACAGGTACTGTCTTTCTCTCTTGGTGCTCAACAGCAAAATGGCAACTTTGGAGTCTTTCCTTTGCCACCTAAAAGCCCACCTCCCACTTCTCTACCCCGCCCCTCCTGTGCTGCACGACTGAGCAGATATGACTGGATTGGCCCTGATGGGTAGGTTTTACTGTCCAGCAATATTTTAAGCTCCCAGCCAGACAGCTTTTATGAAGGGAGGGATGTTTGTAAAACAATAGGATGGAGAGAATGGGAGAGCTGTGTTGGGCACTGAGGGAGGAGGGGTAGGGTAAAGCTGATGT--GAAAGCTTACATGGGCCTTCTGCAGCCTCCAAAAGTTCCTTTTAGCAGAAGCAGATTGGCCCTGTGCAGCAGGAAACCTTCAGCTTTTCTCTAGTGGGCATGAACAAGGGGGTATTTTTTAGGGCCTTATA---ATAATCTTAGAGAATTCTAATGATATAGGGACAGTAAGAAGTCACCTATGTGTAACCTTTTGCCCCAAATCAGACTGAAAGTGAATGGCTGA-CCCTTTTGGAAAGAAACATTTTAGTCTCCGCTGGTGGTTTGCTCttgtgtctcaaaaaatgtagCTATGCAGTCTTCCT

a score=54766
s chr3            96930281 2928 + 160039680 AGGTTGAGTGAGATTGGGAGGGTTGGTGGGGGAG-GGTAGTGCTCAGAAAGATGTAACTGACAAGGTGATTTGG----GGTCCACGAG-----GGCATAGGGAGT--TCAGCGTGAAGGCTC----TAACCTACAAAGAGCTTAAAGGACCTGAGACAGAGTG-GCAAGGGAAA---ATGTTGAGAAGTGTAATTTTTTTTTAAATTTCCTGATTTTTAAAAAAGAATTATGCACAGTT-GCTTACTGGCATAGGTTCCAAACCCCATCACCATGAAGAAATGAGATACCATACCATGTCCAACAAGGGCTAGGCTCATTTCTTTCTACTACAGATTT-TGTTAAGCAGCCACTTTGCTAAAAATGCAGAGTTGGATGAGGTATGGTCCCTGGTGTGATGCCTATGTAGCACAGGAAGTGTGCAAAGAGGCCTTGCACATCTGCTGTTCAAGGAGACATGACAGCAAGAAAGGCTATAAagagagagagagagagagagaAGAAAACCAAAACAAAACAGAATAGAACAACAAAACCAAAACCCCCATGTGTGCTCCACCGTGGACCTGCCTGTCATTCTGCAGAAAACTGGAGGAGGTGAAGATCAGGAGTGAG-TGGTCTCAG-CTCAGTACCAGCCAACTGCCTGACCTTGAAGAGGGGACTTTCTC---------------TTTCTAACTCTGAGGGAA-------CAGAGCTGGCCTCA--CAGTTGCAGTGATTAAATAAAACAAATGTGTAAAACTGAGTTCAGTGCCAGCCAAGC-ATCACTTGAGGAATAGTAACTGCTACCATTGCCGTTGCTAGGGAAAGGGTCAGGATGGTTAGGGTACCTCTGGAGGGAGAGCCAGGGTTCTTTGCTTCGCCGGCGTGGGAATCAATGCTAGCTGTTTCTAGGTTTTGATGCCCGGGGAGGGGCAGGCAGCGAGCTATG-CCCTCCGTGTCCTTTTTCCCTGGCTTATTTGGTCATAAGTCAG--ATTCTTCGTTATCA-GACCATTTGGCTGGAGTTCAAGGGCTCGTGTGCCCTGAGGGAT-------------GCAGGGGGAGTAGGGGGCACTTTCACTCTAGAGAGGATTTCCAGCGCAGAC-AGTTGTCAGGGCAAGGCGGGGCCCTCTATTGAACAGAGCAGTTCATGCATGAGAGTGGACCATGCCAATTCTATAGAGCACGGCCCCTCGGCCCAGCCTTCT---GCTAACAAAGTTATCTTTTCCAATCTGCTTAGATAGAAGGGGGGCACACTTCCTGTCCTTGTGCTGAGCATGTAACA-TAGGAGGGACCCAGGCCAGAGCTGGGTCTGGCTCATGGCTTTATCCCAGA---------------------CTCAAAGTCTTGGGCTCTTTCAGCTACCCCATCACTGCCTTGAACAGAGTTGGCTCAGGTTACAGTAACTGGCCTCTGATTGCTTGCAGAGCAGATCCTGTGTCAGAGTTCTTGGTGCCTGAGGTGGGAGGAGGTATAGAGAGAATCCCAGAGTCAGGTTCTCAGA----GGATAAAGAAAGGGGCC-------------ATACCCCTA---------------TGATGCTCT-GGTCGATGGGTTTAAATGTATGGTCGCTACACTA----CATTTGCAGTGTCCCTTGAAATAATCCCCCAAG---ATAAACCTTAGA--------CCCAGGGAATTAGAAATCCAGGATGGGAACATTCAAGC---TCAGGACAAGCCCTTCGTGAGCCTCGAAAGCACAGAAAATGCTGGCTCCTCTG-CCGGCTGTAGCCCACTTCTGG----GCTCATCCAGGACCCAGAGCATCTGATCTGTGTTTTTTCCATCCCTCTCCGTACCTGCCGCATTTCTTGACACGCTACTGCCAAGG------CCTAGAGGTTTTTTGTTTGTTTTCTTTTCTTTTCAATACTATGTTTGTTTGTTTCCTTCCAAATGGGCAAAATCCTTTCAGAGACATCTCTGGAGTTTTCCAGACAGCTGCATCAGTGCAGCCTACACTTAGCACGGACTGACCATGTACACTTACCCCTCACTCAGAGAGGAGTGGGAACGTGATC---------TGTGCACATCAAGACCGA-GGGTGCACATTTCTCTCTCCACTTTATCGAGACCCAGCAAGGTCTCGG--------TCCCAGACGCAGGAA-CAAAGGGCAGGACCAGGGCTGTCTCAGAGCCGCTTGTCTC----CAAAAGTCCATGTTTGCTTTGGGCTGTTCATGTTGTCTCCTTTAATTACAGGATTTGTCT--------CTGACCTTTCCTGGTGTCTGGGCTCTTCGGTCTCTGTGATTGTCAGTTAACATT----TGAAGGGCTGTAATTTTGTTGTTGTTGTTGTTCTGAAAAACCAGCATCCCCGTGGATATTTTCTAAGTACCTGAGGCTATTTCACTTTGCCCATCCTCATTTTTAGTGGACAAGCA----TAAGGTACAAATATTATACATGGGAGAAAAATC--CAACATAG-----AGGCGAAATCGTTCAATAGCAC-------------CATTTAAAGCCACCACGACTGTGAC--TGCCCAAGGTGGTTTGTGTGTGCCCCCGTCTGCCTTCTGTGCTGTGCATGTAAATACAAATGAGACCGGCGTGTCGCACATGATAGTGTCGTTTTCCATTTCCCCTTACATCATGTTCATCTCCGCAGTACATATAAATCAACCTCATTTGGCTAAGGCCCAAAATCATAGTCCAGAGTAAGGCCCGTCGTAGGAATGAGTCCAGCCTGTTC-----TGAAGGCCATGTAGGATGGGATTATTTTctccttctcttccctttcctcctcctctccctccttcccctcttccttcttctcctccccttctctccttcttcctcttcttcctcctcctcttcttcTTGTTTGAAACCAACATCGGCTATAAACATTTTCTAAGTGCTGCAGGCTATTTGACTTTGCATACCCATATTTTCTTTTCTGATACAGACTTTTGAAATAATAACTTTGTGTGTGTGTGTCCGAATCTA-TTTCAAGCAAATGGAGGGAAACTTCTCGTGGCAGAATTAACTTTCCAGCAGAGACAGAATTGAAAATTTGAGAG
s HiC_scaffold_1 106488045 2749 - 233722169 AGGGTGAG-GGGAGTAGGAGGGCTGGTGGAGGGGAGGTGGTGTTCAGATAGCTGCTGCTGACA-GGTGATCTTgaacagatttaaaagaaagtGAGAGAGGGAGTCATTAGGGTGAAGGATTGGAGCAACCT--------CTTAGAGG--CTGAAACTAAATGAGCAAGGAAAATATATGTTGcgaaatgtaactttt------atttcttgatttat---------ctGTGTATGGTTTGTTCACCTGCACATCTTTAAAAATCCATCACTACCCAG-----------CATCCAATATGCA------GCTTTGCCC-TTCCTTCGTACCGCAGACTTCTGTTAAGCATC--------TAGGAACACAGG------TCAGTCACAGTCCCCATGGTGATACTGA----GCACATGGAGTGTGAGAAAACCGGgtgttctttttccttctgcGGGGG--TGGTGGTAGGAGAGGGTG----------------GAGATTCTGGACCACC--------------CATCACACTGAACCTTGGATCCCGGAGTTTGGTCTCATGGGAATTTGAAT----------AGCGAAGTGGTTAATGCCAGGCTCTGTAGTTAGATGGCTTCAGTCCCACTGCTAATGAGTTGCCTGACCTTGCACAGGAAGTTTCCTTGTCGTGACCTCATTTTTCTTGACCTTGTGGAAATGGGTGACAGCGGCAGCCTCAAACAGTTGCAGTGATTAAATAAAACTG-TGTGTAAAAC--AGTTTATCACTAGTTGAGTGAACACTTGATAAATGGTAGCAGCTA---TTGCCATTATTAAG---------AGGAAGCTCTGGCTACCAC---AGGGAGGTCAAGGGTTCCTTGTTTCACCAGCATAGGGATCAATGCTTGCTTTTACTTGTTT---GTGCCACGTGAGGACCAGGAGGTGAGCCATGGCTCATTGTGTTCCTCCTCCCTGGCTGATTTGGTGGTAAGCCAGGGATTCTTCTTCATCATGACCATTTGGCTGCAGTTCAAGGGCTCCCGTGCCCTGAGGGGCAAAGGGTGGGCTGGAGGGGGGAGTTGGGGGCCTTTTCACTCGAGAGAGGATTTTCAGCCCAGATGAGTtgtcagggcagggcagggcttaCTATTGAACAGAGCAGCTCATGCATGAGAGCAGATTGTGCCAATTCTATAGAGCACGACCCCTCAGCCTGGCCTTCTCCTGCTAACAAAGTTATCTTTCCCAATCTGCTTAGGCAGAAGGGGGACACACTTCCTGTCCTTGTGCTGAGTACAAAATAGTAGGCAGGA-GTGGGTCAGAGCTGGGTCTGGCTCTCATCTTTTCCctctaattctttttcttccccaacTCCTCAAAGCCTTAG----TTTTCGCATCTTCCTCATGACCTTGGGTTGAATTGGCGCAAGTGGCAG-AACTGGCCAATGACGAGGGTCAGA-CAAGGAATGTCTCGGCATTCTTGGTGGTT-------GGGAAGGTACAGCGAGAATAGCAGAAAAAGCACCCCAGACAATAGGTAGGGAAAGAGGCTACTGCAGCCTAAAATTCCCTGAGTTTGGAGCAGTTGTTGATGCTTTAGATCAGTGGATCTCAAAGTGTGGATCACATACCACCAGCAGCAACAGCATGGCCTAACAAATTTGTCAGAGAATATAAACTCTGAAGGTCTCTCTCCACTGGATCAGAAACTCAGGATGGAGACCAGTAAGCTATTCAGGTGAAAC---TAGTGTGTGTTAAAGGTTTCG---ATCCTG--TACTTTGTCTAGATATTTCCAGCTACTGGAATTGCTCATCTTGG-CCCAG------TTGCCTAGAGTTTTTGGGTCTCAC----AACTTACTGCATTTCTGGACACTTAACCATCAAGATAGGGCCCTAGAAACATTTTTTTTGG--------------AAGTCTA----------------CCCA---GGAAAAAGTCTTTGTGAAGGGCTCCCAGAAATCTTTCAG-CTACTGTATTAGTCCATTC---------------CTACCCATACAATAAGACACATCA--GAAAGAGGCAAGGAAATGTTGTACATACATTGTGTGTGCATCAAGACTGACTGGTGGGCACCTTTATTTCTATTTGATCGAGACTCTGTGGGGTTTAAGTAATTAGCTCCCAGTCACAGAAAGAAAAGGGCATGGCCAGAACTG----GGACCAGCTTTGCTCAACTCCAAAGCCCATGTTTGCTCGGGGCTGCTCATGTTGTCTCTTTTAATTATGAGATTCAGTTTTACAGTGCTGACCTTTCAGAGCATCTGGGGTCTTTGGTCTTTGTGCTCATCAGTTAACATTTGAGTGAAGTGCTGAAATT------TTGTTGTTATTCTGAAAAACCAACATAGTGGCAAACATTTCCTAAG-------GACTAATTCACTTTGGACAtgttcatattttataaaaacacatatgTAAGGCACAGATACt-tgtaagtaaaaaaaatcaacaatgtagCATTCAGGATAAACTA-TAAATGTCTCgcctttccctcttctttctatGTGATCATGACGATGGCTATGCCTAAGA-GTTTGATGTGTGTCTTTCTTGACACTTTTATATGTATACATTCATGTAAATGAGGCTGG-----TGAATATTTTTGtgtgacttttatttt--acttatatctttgTGATCTTTGCAGTACATATATATCAATCTCATTCTTTTACTATCTATGATAGTATTCTGTAATAAAG-CTATATTGTGAATTTATTCAGTTTGCTCTCCATTGAAAGACATTTAGGTTG----------------CTtttcctcctcattctcctcGCCTTCCT----------CTTCTTGTCCTCCAC-------------------------------------------------------------------------------------------------------------------------------CTTTTGAGATAATAGCATCct---------tctgaatatatttttgagCATATAGAGGGGAATTCCTAGAGGCAGAATTGATTTCTCAAAAGAGGTAAAATTGAAAAGCTGGTAG

a score=12998
s chr3            96933336 429 + 160039680 atttgcattttcctgattacttgagaagtaaagttacctctgggatgtttgttagttgtctgtgtctcttttttccttggagttgtctgctcatcgc-----ttcct----------------------------------------agtgtgtgtgtctcgggggttggttt--tttttccttgttgatttataagctctttttatGGCCTGCGACTCCTTTCCCTCT-----------------CTGCCCGTGTTGTA------------------------------------------AAACTTCCAACTGATCACTCATCTTGTAACTTTGCTTTTAGTGTGTTTTGCTGTGCAGAGAATTTATATTTTTTATCAAATCAAATCCATCTTTTAAAAATTTATGGTTTCTTGACTTTGTGCCTGGCATAGAAAGGCCTCCAAATGCCATTAAAATTCAGGAAGCCGAGTGTGGAGGTTTGTCAGGGAGGTTTGTT----TGGAAGCTTCTTTTTCATCATTGCAGCTTGGATCTT
s HiC_scaffold_1 106491459 519 - 233722169 atttatatttttctgagtaCTAGAAGGATGGAATGACTCACCATATATGTATTagctgtttgcatttcttttcttat--gaactgaATACTCATTTCCCttgttcattttagaaatttatgtatatgtgtgtgtgtgcgcatgtgtgagtgtgtgcgtgt-gtagaTTAATTTACCTTTTCCTTGTTGATTTATATGCTCTTTT-ATGGACTGTATCTGTTATCcctctgatatatatatatatatatatcagtatagtatcagtatatatatatatatatatatatatatatatatcagtaaagTTTCCAACTGGTCACTTGTCTTATAACTTTGCTTTTAGTGTGTTTTGCTGTACagcaaatttgta-tttttatctgatcaaatttgtcatttaaaaatttatgatttcTTGACTTTGTGCCTGGCTTAGAAAGGtttcttcttttcattaaaattcaggaaatca-------------gttagaaaaaatttttgccaCAGTAGC--CACTTACAGCATTTAAGCCTGGATCtt

a score=49631
s chr3            96935525 4392 + 160039680 [encoded data, 5108 characters]
s HiC_scaffold_1 106493015 4419 - 233722169 [encoded data, 5108 characters]

a score=13730
s chr3            96942166 499 + 160039680 aACCCTGGGTGCAGATGCTTAAAACTTGGCCAAAGGAGACCTGAT--AGGTACACAAGATGTTCAATACAGTTCAGAGCAAAACCTCTTAAGGCAC------CTAT-------GTGGTGCTATGG--TTTATCTTTTATTGCACACAA-----CCTAGAAAGACCTTACTATCACACttttcttttctttttttttttttttttttttttttttttttAGAAAGAGACGAAAGAGGCAGATTCAGTGTCCTACACAAGGGTTGCAAAGGAAAGGCT----CTCTATTCACACACTAATTGTGTTTAAAATAAAAGTTAATCAAAGGAACCTTTGGTATTGCCTGACAGGACAGGTTATAGACGGTGT-TTGACAAGCTATTTGACCCTGTTAGATGCCTTGGGCACAGCTGCAGTGAATCCAGAGTAAGGCCAAAAATAGAGCCCATCTCAGGGTTTACATTGTGTATTTCTGACTACTTAGTTTTAGAGACACTGACGAGAAAATTTGAA---GAAAAAAAATTAAAA
s HiC_scaffold_1 106497980 494 - 233722169 AATACTAGGTTTAGGGACTCAGAACCTGGTCAAGGGAGAGCTGTTTGAGGTGCAAGATAGGTTGCAGAATCCTTAAAGCAGATTATGTTAAAGTACTTCATGCTATTTCAGCAGTGGTCCTGTAGAGTTTGTATTTTGGTACATATCAATTTACCAAGAAAGATTTTATTGTCACACTAAT--------------------------GTTTCAGGtggaaaaataggcaaaagagACAAT----GTGCCCTGCCCTGAAAATGCAAAGGCACGATCTATACTCTACCCAAAAACCaactgtatttaaaataaaacttaatcaAAG-CATCTTTGGCGTTGCCTGATGGGACAGGGCACAGACAGTGTATCGATGTGTCATTTGACAGTGCTGGAAGCCTTGGGTACAGCTGCAGTGAGTGTGTGGGAAGGCCAGGAATAGAGCGCATCTCAGGGCTTTTGCCACATGTCCCTG----TTTATTTCTGGAGTCTCtaacaagaaaatttcaaaggggcaaaaaataaaaa

a score=4119
s chr3            96943916 82 + 160039680 GGCTTTAGAAAATGTCATGATGTTTGATTTGGCATTAGATTAATTTTCCAGCTAAGACTTTTAGAGTTATTAAAATATTTTA
s HiC_scaffold_1 106498843 82 - 233722169 GACTCTGGAAAATGTCATGATATTTGCTTTGGCAGTAGATTAGCTCTCCAATTAAGCTTGTTAGTCTATTAAGAGTATTcta

a score=82111
s chr3            96943987 4744 + 160039680 [encoded data, 5509 characters]
s HiC_scaffold_1 106500438 5087 - 233722169 [encoded data, 5509 characters]

a score=32082
s chr3            96953436 1003 + 160039680 TTTCTATTCCATGAAAAA-GATAAGGAAGCATTGATTTGGCTAGGAAGTGTTTCTGGAATTTAGAAATGAGAGAAG-------TGTCTGAGATACTATTGGTTAAGGCCCTATTGGGAAGACCTTGTTAATCAGAGAGGGAAGAAAGAGAGTATAGAAGGGAGAGAGAGG----AACTGAGGTGACACTGGACTTGGCACATGTTTGGGGACAGCGGGCTCAGCAGCTAGGCTATAGCTCGGCTTGTG-----GAATTTATTAGAGGGAAATGGAC------------------TGGCTGGGCAA-AGGCATTGGAATGTGTTCTATAGCCCAGTTTCTCACAGGAATCAGGGAGTGCGCAAAGAGGGTGGGGGTAGGGAAGGAAAAGTCCGTGCATTAAGAATAACGTTCCTTTCCTGCACTTCACGGCAGAGGGTCGTGCTGAATGCTGGGAAGGGCTGGCTCCTCAACCTGGAGTCT------------GGCTTTCCTTTTCACACGGTATTTGTTCCCAGTCCCTGGCTGTCTCCCCTGGGGAGGACATCCGTGGGGACAGTTCCTGTTTCCCTGCCATTGCTGGC-CCAGCCTTCCTGAATGTGATATGATTGTTTCTTGGGGCACAGTGCAAAGATGCCAAGGGAGGACGGAAGTAGCTCATGCCTCAGCAATCT--TTCTACAGCAACAAAAGAAAAGACCATTGAACTTGGGAACCCTGGACCTTACGTCCTCTTTCTGCTGTA----AGCAGGGACATTGTACAGACACTGCCAGTCGGCCCTGGGGCCCAGATATAGCTACCATGGGAACCCTTAGGCTCC----CATCCGAGCTAGGCAGCGATGGC--TCAGTCCCTTCT--------AACTACTATGTTTATGCAG--TTTCCCTTGGGAATCTTGGAATGTGGACGTGGAGAGCTTCACTCTTGCA-CCCCTCCTCTCTTCCCTGCCCACATTCTTGTCTCCCTTTAACAGTTTTTTTAGTCACTTGCTTACTTCTTAGTCACCTTCCTCTCATTTCTTAATGGTCACCACATTTCTCAAGTATCTATGTG
s HiC_scaffold_1 106512398 1037 - 233722169 tttccatttcatGAAAAAAGATGAGGAAGCACTAAA--AGACAGGAAGTGTTACTAGAATTAGAACGTGAGAGAGGGCAACACTGGTTGAGATGTTCTTGGTTATGGACCTATGAGGAAGACC--ATTAATCAGAGAGGACTGGAGAAATatgtggaagaagaaaagaagggtgAGTTATGCTGAGACTGGGCTTGGCATGAGCTTGGTGAAAATGAGCTAGGCAGCTAGGTTTGAGCTGGGTTTATGTAGATGAACTCA--AGAGAGAAATGGTTACTTTTCTCGTGAGGATGTGGCTCTGTGCTAGGAGCTGGAATTCACCCTGTAGTATAA---AACACCCTGGTCAGATTTTGCAaaacaattgtgtgtgtgtgtgtgtgtgtgtgtgtg---taagactaACGTCCTGTTCccagatttgg-ggctgggggttgtGCTGAATGCTGGGAAGGGCCAGCCCCTAAGCCTGGAGCCTCTAGTAAAACATGACTTTCCTTTTCACACAGTGCTTGTTCCCAGCTTCTGGCTGTCTCCCCTGGGGAGGACATCTGTGGGGACAGTTCCTGTTTCCCTGCCATTGCAGGCTCTTGCCTTCCTGCGTGTGATATTATTGTTTCTCTGGGCACACTTCAGAGATGCCAGTGAAAAACGGAAATATCTTGTGcttaagaaattttcttttgaggcaa-aaaagaaaaggctaTTGAACTTGAAAA-CTTGGACCTGAAGTCCTCTTTTCCTGGTATGGGAGTGGGGGCACTGCACAGGGTCTATCAATCAGCCCGATAAGTC--ATACATTCAACGTGGGAAAAAGTTAACTCCTGATCATC--AGCTAAGCTCTGACAGTGGTAAATTCCTTCTTTCTCCAAAACTGCTACATTTAAACAGCATTTCCTTTGGGAATCTTCAAATATGGAAATAGAGAACTTCagtctctcattcttttccctCATCTCTTTCTACATTCTCA-CTCCCTTTAAT-GTTATTTCATTCAtgcactcatttatt-----catttgtctcA----TCAA--------ATATTTCTTGAGTACATACTTG

a score=24838
s chr3            96960588 1665 + 160039680 CAGTTCTCAGCAGACCC-AGCTCCTGGAGGGTAGAATCA-CACCCCGTAGACTTTGGAGTCTCTTTTGGCCTTAG-----GTTGCCTGGAACACAGTGAGCAGTCAAACGTTTGTTGAAGTGCAAAAAA-----------------ACGGATGCTGT-----TGGAA---------GGGCAGCGGCAGAGAAAGGAAACCCCGTGCTTCCCAGACAGCCCTACGCAGCCTCAGCTGAGTTAAACCAGAACAGCTGCCTTCCTGTGACTTTAGGGAGTATTGAGGGACTGGG----CTTCAGGGACTGTGGGCTGCTGGGGGCCAGAAGCCGCAGATATCTGAGGTCTGTACAGGAACTTAGGAAGACTGGCAGCAGCGAATCTTATTTTTACTCTCCCATTTAAAGAAATATTGCTCTTGGGCTTAGTGAAGCCAGTGCTGGCATTTCAAGCTCGGAAAACTCGTTATAAAGAGGGTATTTTTATGAACCTTTTGAAGATTAATTTTTTTAAAAACCAG-------AATATCTAGAAGGAAACTCACTAACCTGTTATTCAAATT-TAGGTGTGATGGAACACACTGAGGCTCATTCTACCACGTT----ATTCTGCTACTGTTTATTGGGTACTCAATACATGTACACGCTTGTGAGAACATTGAAGATTTTATAAAGTATAAGGCATGACTGCTGTCTTTCGA-AAGCTCTCACCCAGAACTGAATTTTGAGCGAGTGGATTGGGAAGTACAGAGT-------TTCCGTTCAGAGCAGTGGCTCATCCTCTTCAGGTTCACCCTCCACACACACCCAAAGCTCCCCTCCCGACATCTGCGTGTGGGGACATAGTGACAGTTATGTGACTCACTGGGAAGAGTTCTTTAGAGGAGGTAGACGTTATAGAAAAGGTAGGACTTTCGAGTTTTAGAAGGGAAT------ATTATGACTCTGCCAATGTCCAGCAGTGCCTCACTGTCTCATTCTGAACAAGatatatgtatgtatattatacgtg-tatgttatgtgtattatatgtatgtgtatttatatgtatatAAAATGTCGACTATGTATCTTCAACATTATAGGTGAGGAAGAGCAGAGTACATCCATATACCTGAAACCA----CATTAA--AGTTAAATCAG--GAAATACCAGGTTTGCAATCA---------AAAGAGTAAGTCAGAG------------------------------TGAATGTTTACT-----CTAATA-----------------AACTGCATTCCTGTAA--TAAATTCCTATGTGACTAAATGAGATAGATTCCCGCTCTCTGGAAACAACAGCAAACTCTC-----------TCCAGATGGGGAA-GCTGAAGTGTCCCAAAGTCTCttctct-tcttgctgtatgg--gctttggtaaagctaactgcagg---gccttacgtctacctcggttatgcttcatcct-gtaacttggggagatcatctcaggcccctga-----cagtctctgtgttttctattttcagcttcatttgttgtgttctacattgataaacaccttcctgggttttga-ctgatttagtgtttaaaatgttg------------actaagagagggcaa-----------------------------------------aggccagCAGGCTAAGGCAGGCA------GTCTGGGAACAGGCATATTGTACAGTTCTCAGTAGGGCGAGGTGCAAACACCTCTGGTAAGTACAGAGATGTGGGTACCATAACTTCTACT--------GAGTGGGCAGGACAAGCTAATGTGGCCACTTTCCAGTGTTGTATGAGGCCCTGAGCTGCAACA--GAGTCTCACATCTATGAGGCTTT
s HiC_scaffold_1 106531615 1750 - 233722169 CAACTCTTAACTGACTTGAGTTCCTGGAGAGTAGAGTTATCTCTTAGTCAaattcttcatcttcttttgcTCTAGCATACAGTTCCtgaaaaata-----tacacaaacatTTGTTGAATTGCAAACAATTGTGAGGTCTAAGAGCCCAGGTTCTGTGCAGATGGAATGCTATCACAGGCGGtggcagagaaaagaaacctCAAGCATCTCAAACACCCCTGAATGGT------TGATTTAAACCAGAACAGCTGCTCTGCTGTGACTCCAGGGATTAGTTGGGGACTGGGAGAGTTTGTAGGACTGTGGACTGCTGGGGACCAGAAACCACTGATATTTGAGCTCTGTACAGGAATTTAGGAAGACTGGAGACAGGGTATCTTATTATTA---TTCCATTTAAAGAAACATTCCTCATGACCACAGTAAAGTCAATGCTAGTGTTTAATACTCAGATAATTCCTTATGAAGTGTGTATTGCTATGTACATTTTCAAGATTAAATAGTGAAAAATTCCGAGGGATAAATTACTTGAGAAAATTTAGCTAAACTGTGAGTCAGTTCAGAGATTTGATTTAG-AGATTGTGGTCTGTAATACAGTGCTCTCCATTTTGCTGATATTTATCGAGCACTTAGTCTA----------TACTAAAgtattg-agattttttaaaatataaggcacagattttatttttcaagaggtTATAATCTGGAGTTGAATTTGGGGTGTGTAAATTGGTTGATGTGGGATAATTGAATTTAATTCACAATAGAGAGCAATCCtttatagatacac---acacacatacacaaa-----------------tgcgc--------------acatttatttg------------------------------------catatgaaatgtag-----------ttaaaaataaaactgattaatTGTGCCTAGGAAGATGAGCAGAAGTTTCT---TATCTATtcctgaa-aagaaaca-gaatttcagCTATACTTGATAATATACATGAACTATAT-----TAAACTTAAAT---CAGAATATATTGGATTTGCAAGCCAA------------AGGATTAATAGAGTACATTTTTACCTAACAAACTGGATTCATTAAGTGACTAAATCTGTTGAAAACCCAGTAGAGTATTAATACTTTGTGAAAGTATAAGACAcaaatttcatctttctttttttttttttttttttgtctttttcctttttattggtaccagggatcgaactcacgactgcctgcttgcaaggcaggtgcttatgccac----tgagctaaatccccagcccct-----caaatttcATCTTTCAGAGGCTATAATCTGGGTGTGAAATACTCAAATATTCCTAAATCTGTTCTTTGTACTGCCATGCAGTTAATTTTGCGAAGGTAAATGCTGGactgttttacatttattttga-tatatttcatcTTCTTAATATGGGGACATCATTTT-GGATCCTGATTCTGttgtctttgtattttatatttttagcttcAT---TTGTATTGTACACTGATAAATACTTTCTTATGCATTCATCtgattttttgttaaaaatattgcatggtcccggtactgataaaaaggaaaaacaccaaaaaaaaaaaaaatattgcatggAACAGTATGGAGgtgagcaggcagaggtggatcagTAATGTCTAGGGACAGTCATGTCCTATGGCACCCACTAGGGCTTGGTATGAATACCTGTGGTAAGTTCAGAAACAGATCTATCAAACCCTTGTCTCACACTCAgagtgacaaagaaaaacaaacacaaacactgTTATATGCAGTACAGAGACCT---CTACAACACCAAACCCCACATCTATGGGTTTTT

a score=43840
s chr3            96962863 1603 + 160039680 aaTACCCATT-TCATTGACCACTAACACTGCTATTTTTCCTTTCtgtcattccttatacttgtgaa-cctggttagttttatcttcc-ctcctagactctgctctgtgagaacagggaccatgctaggccatcc-------------ctgtctgcttatgaccttgcataca-------tgctcagtgaaCAAGT---------------------------------TCATACGTGGCATCTTTC--TTGTTTTATCAGGGCTGGGCTTTTACATTGCTCCCTTCCACTAAACACTGGATAACTGCAGCAATACAGTTGCGTATGCCATCTTTTCTTGATACAGAACTTGAGACGCGCTAGGCGCACCCTGTTTTTCCTTATACACTCCTCGACCACAGGTATGGGTTGAG------ATCATCCTATCAGCCTTGAGAATAGAGAGATTCTTTATCTTGCTCAAAACCACACAGGCATTTTCAGGGGCAGCTGCTAATAGATTCTATGGtttttttttttttttttttttttttttttttttAAGTTCAGCCCATTGCTGAGGATGCTAAATCCCACTAAAGCTATCAGGCACCAGAGCCTTATGGCTGCTTTTCAAGGGTCTACAATGCTCCCAAATTGATTCATGGAAATGGCTGCAGGATTGTGGGAAAGCAGCTGG-TACTTCCCAGCAGAATTAGCTGCAGCCAGTTTAGTCACTGGCTGAAAGGCGGCAGGAAATCTCCTACAAAAGGCAACCACACTCCCTGTAATAGAACAGCCAGCAAACGTGTTGCCAAGGAGCCGCAGGTGCCGGGCTGGTTTAGGGAGAT------CAGGGCAGA------------CAAGAATGTGAGAGGTTTTATTGTTAGATTCTACTCTCTGATGTGGCCGCTCTGTTACGGATGGGTCAGATACTTTGACAAGAATGCAATTGATTTGTCAATGAAGTTAAAGGAGTC------TTTAGTTGTCACCAAACCTCAAGCCACACTCAGACAGCTG-----------TGGTGCCATT-CTTTGGCAGGCTTGAGGTCAGCAACCAGCTACTGGCCTTCATTCTGACAGGCCAGGAAATGCCCCATGCCACAGGGCTGGGGGACAGCCTGGCCAAGGGGTGTCAGACTCAGGTCTATTTATTTAATACTATA-CTATCACATTAAGTAGTTTCAAAAGAATTACAGGGTCGAGAAAAGGGCACAAACATGATGGATGTAATTTCTTTGAAC-----------------CTGATCCTTTATTTCTTCAGAAAGCTTGTATGCACTCATTTCTTACAAATAAGTGCTTTTCCCAGTGTGTCAATCAACTAACCAGCAACA----GAAAATTAATTTAGGTGCACTACTGTCCTCAGACCCGAGTCAGAGT----------GTTGCAACAGCATCCTTTATGGCTAAAGGTTTGGGTTTGAAA-CTCATGCTTCCTGAGCGGG---TGTTTAGGTAACGGCA-------------CCCCATCTTTTCTAGCCTGTCACCTTTCTTTACCGACTATGAAGATGACTAGCA-------------AGTATCTCTCCTTTTAGCCTGGCCTGCTCTTCCCTCGACAGGTATTTGCTGTGCATCTTTGAAAGGAGAAGGAATGACCTGGAAGTCATGCTGTGCTCCCAGCACAGTGCTGGGTGGTGCAGATGTTCCGCTGTTCTTGTAACTGATGATGTCATCTTTGGTTATACTCCTCAGATGATGC
s HiC_scaffold_1 106533562 1695 - 233722169 AACAGCCATTGTCATTTAa-gctaaaacatttatttatttatt-tggcatgTCTTACACTTGTAAGGACTGGCTAACTCTGTCTGCTGCTTCTAGAGTATGTTCCATGAGGACAAGGACTAGGCTGGCCTGTTCACAGATGCAtgctttgctcttttctggtCTCTGGTACAGTGTTTGTGTCCAATGAATGGGTGACAAATGCACAACTATCATCTAGATATAATTGTTATTAatgatatcttttattttgtttatcagGGCTAGGGTTTTAAATTGCTCCCTTCTACTAAGCACTGAAAAAGTATAGAAACATGGCTACATATACTACAGTCTCTTAATACTGATATCAAGACTCTGTCCACACACTCTGTTTATCCTCACACACACCTTTACAATAAGTATGAGTTGGGGGTGTTATAGTCTTATCACTCATGAGAATAGAT---TTTTTTATCTCACTCAAAACTGCATGAGCATTTTCAGGAGCAGCTATTAATAGAGTTTATG---------------------------TTTTTCTATATTCAGTCTATAGCTAAGAATGCTAAATCCTACTCAAGCTATCAGGCACCAGAGCCTTATGA-TGCTTTTTAAGGGTCTACAATTCTCCCAAATTAATTCATTGAAGCGGCTTCAGGACTGTGGCAAA-CAGCTGGTTACTTCCCAGTAGAATTAGCCATAACCAGTTTAGTCACTTGTAGACAGAAGGAAGG-AGTGTCTTACAAAAGTGAGCCACACTCCCTATAA-ATAACAACAAGCAAATCTGTTCCTGAGGAGACCCAAGCATCTAGTTGGTTTAGGAAGATTCAGAACAAGACAGAGATCTATACTTTTATGAATGTGAGCAACTTTAGACCCAGGCATGGGTTTTAGATTTGGTGATGCTGTTACAGATGGGGCAAATAGTTT-----GAGGGCAATC-ATTTatcagtgaaattaaagaaagcagaaatatGAGCGGGTAGAAAACCTTGAGCCACAGGGAGCCAGCTGCTGCTGTGTGACAGTATCATTCCTTTTTCTTGCCTGAGATCAGCAACCAAGTACTGGTTTTCATCCCTACTGTCCCTAAAATGGCCTGTAAGACACAGCTGGAAGCCAGCCTGCCCAAGAGGCATCTGACCATAGCCTATTTATGTAATAGtatgttttttttattaaatagtttaaaaaa---tatgcaattgaaaaaaaagcacaaatatgGTACAGCTATTTATCCTTAACCATTTGAGAATAGGTTGCCAATTCTCTATTACTCCAAAAACTTTATAGTAATACATTTCTTGCAGATAAAGACATTCTTCTATATGACAaccatacaataaataaaaattggaaaattagCCTTAATGTATTATGATCATCAAATCCTATTTGAAGTTTTGTCAAGAGTTGTGATAATATTCTTTGTAGCAAAACTATCCAGTTCAAAATCATGTGCTACCCATGTCAAATCTCTTTGATTAATATCAGTTTAGATTAGTCCTTCATTTTCCCTTGACTGTCACA--TCCTTGCCACTTTTGAAGATTCCAGGTAAGTTATTCTGTAGAGTATATTTCAATTTAGGCTTGTCTGCTCTTTCCTGAGCTGAGCCAGGAtatgtatttttgaaaagaaaa-------------------accattttCAGTGCATCATAGCTGGTggcacatatttttaatttttcctat-----ttgATGTTAACTTTGGTTGTTTTATCAGGATGATGC

a score=11171
s chr3            96969385 679 + 160039680 GTTGTTTTAAATGGCTGAATATGTGGTGCTGTG--TCATGG-AGCATTTGAGAGCCAGTACACT-GCCCCGGTTTCTAGCCTTGTGTTGCTCTAGCTGTCAGCTTTAGCCTTTGTTACATACCCTGACTTCCAGCCAGCTAACCATTAATATACATATAAATGTacatatacatacacacacacacacatacacacacacaGAGCGAGAGAGAGAGAGTTTCAATTAAGCATTGGCTCTATTAGGCTTTTACCTCTTAGCTTTTGCTTGTT--GGGTTTGGTTTCGTGGAAGGAACTAGCTTGTCATCTTAGCTTTATGGTTCCCAAATTTGCACTTGAAGTTAGTCACCCTTGATTGTACGAAATGGGTAAAATATGAACAGCTGTGTGGAG-ACAGCTAAGAGGCTACTGAAGAGGTC-----CAAGAAGAGACTTGCCTTGACCTGGTGATGGGTGGGAGTCTGGAAGAAAGCAGGTGGATCTGA------------------------------AACACTCAGAGACAAGCACTGGCAACACCATTATTTACCAGGCTAATGTGGTAG-ACATTTTCCCCCTGATTTTCCATACTTTCTGCATATATATGCATA-----------TTTTACACTAT----TAGTATGTTTTAAATTTTGTATGCTGAC-TTTATACTTATTTTGTTGCCATCAGTTATCTTAAGTAT----TATCATTTAAGATCATTATTTTAATAA
s HiC_scaffold_1 106536086 697 - 233722169 GTTGCTTCAAAATACTAAATATGGGGTAATTTTATTGATGACAGCAATAAAAAGTCAGCATAATAGTCCAAGTTTAGAGTCCTTGTCTGATCAGGGTTGCaatctt---cttttcttcctataCTCACCACGATCTAACTAACTTTTGACTTCC-TACCAACCAGCTAACCTATCAGCAAACCAACCGACCCATCCACACAAAGTAGTGGG---------------ATgcattaaatttact---tttttacttcTTGG-----GCATCTTCAGGATTGAGTTTCATGGAAGGAGCCAATTTTTCATACTATCTCCGTGGTCCCCAGATTTGCATTCAAAG---ATTACTTTTGATCCTATGTTGTGAGT-GAATAGGCAAGGCTACTGGGAGAACAGTTCAGAGGCTATTGTGGAAGTCTTGTGTGAGAAAATAA-TGACTTGACCAGATGATGGCAAGGAAT-TGGGAGAAAGTAGATGGATCTGAGGAAAGATAATAGAAGTATCCTTCAATCTCAGTGCTCAGAAACAGCCATTGTCAATATTAATATTAACCAtgctaatattttaatatatcttc-----aatcttc---attttctttatgcatagTCATATGATAGTATATTTTTACAATATGGGATAACAttagtttaattttatatgtTGACATTTACCCTTACCTTATGAC---CAGTTACTTAAagcattaaatataattttaaat-aggaTTTTAATAA

a score=18595
s chr3            96971000 705 + 160039680 acacacacacacacacacacacacacacacacCACTGCTGCTC-TATTCCCATGAAGGCCTGGAAAGTG----GAGTGCTCAGGTTAGTGGAGACTTA-TCTCTGGCCTCC-------------CACCTCGAATTCCCCAGACCCTTATCTGTACTTCTTCACCTTCTCCTACAAGGGACAAAGCAGGGCTTCGCCCTCCCACACACACTCGGAAAGTTGTCAAATAGTTTAAGCCATGGTGTTTGTGGATAGCAAAGGTGCTGC-ACTGATAAGAAAAGTGTTA-CTGATGTGTTTAACACCCACGGAAAGATCTACAGTTCAGCGGCGACTTTCCGAGGAGAGAGGGGCTCAGGGAAGGAGTCATGTGGCAGATAGCATTGGGGGCTGCAATTTGGAGGCTGAGTGCCAGGCTGAGTTTCAGACAGGGCTGACCTTTACAGAAAACTTTTACCCTTTGCCCAACAGCAGCAGCCCTTTTGTTTCTTCGGTGTAACTGCTGAGTTACTACTAGATGGG----AAAAGGATCCTCACTAGCACAGCGGGCTGC-TGCCTGACCTGTCC-----CCTTCCCT--CTTTCCTCTCAGTCTTC-----------CCTCAAGAATGGTGAGGAAGGAAGGGGGTGAGGGAGTGTTGATTTCACCCCTAATTGGGAGATCTAGTATTAGAATTGTAGTTCCTTTCCCCCCATGCTTGCATATAAGAAGTAATTCTCTATAAATATTGACTTgag
s HiC_scaffold_1 106538180 707 - 233722169 acacAGATAGACAAACACCCCTCCTCCTACTCTCTTGCCATTCCTATCCCTATGAGTGCAGGGCAAGCAAAAAGAGTGGTCAAGTTAGTGGACACTTAATCTTTAGTTTCTTCTGACAATTCCACACTTTGCATTCCCCAAGCCCTTATCTTCACCCCTGCCCTTCCTCCACCA--GAACAAGGCAGGGTTTC--TTTCCCACACACACTCTGAAAGTTGTCAAATAATTTAAGCCAAGGTGTTTGCTGATAATAAAGGTGTTGTGGCTGATAAGAAAAGTATTAGCTGATATGTTTAACACTCGCATAGATGTTTGCATTTTAGTAGAGGTctttggaagaaagaag----------aaaaattgtg----aGACGTCTTTGGAGCACTGAATGTAGGCACAGAATTCCTGGCATCATCTCAGACCATGCTAGTC-TTGCAGAAA-----TGCTCTCCACCCATTTATAGTACCACTTTC---------AAATAAATGCTTAATTGCTGCTAGGTGGGTGGTCAGAGCTCCCTCAGTGGCATC-TGGCTTGCACACCTGACCTGCCCTGACTCCTTGCCTGGCTTTCTCCTTAGTCTctgtgggagagggtgggaggaaTGGTGAAGAGGGGTTTGGGAAGAGGAATG--GGGGTCATTCAAAATTGGAAGACTTGATAttagaattttacttttt------ccacACTGGTGtatgagaaataattttccatAAATACTTATTTGAG

a score=43285
s chr3            96975018 3406 + 160039680 AGTAGTCAACTTTACACTTTGGCATTTCTTTTCCAAAAAGACCTCGTTGGGCTAAGCGTGAATCTGCGATGCGAA-----ATA----------TGCAGTGTGAAGATGACTTGCTTGTTCTGGGCCCACCAGAGC-CCCCTCTACCTGC-CCTCCATCCGTGGTTTTCCATGGCTT---CTCACCTGCCACTAACACAGCGAGGAACCCAGGGCTTTGAGCAGTCTCTCCATCTTCCCCTCCCACGCTCCCCCACCCACTTAGCCCTGGCAGTTTTTCAACTTTC-CTTCCTGCTCAGATTCTCCTCT----CTGCTTCTTTTCCATCTGCCT-TTCCCCTTTTGCTTAACCCTCCC--ATCACCATCCACTGCTATATAAGATTTGGAGTTTGGG---------------------CTCGGGTTGAGGAG-----------------AAGCAGCCGAGGATCGGAACA----------------------------------CATCTGGCAGGAGAAAGACGAACCCACTGGATCGAGCTGCGGTCCCCTCATGGCATCCTCATCCCGCAGAGGCACCAAGCCTCTGGCTTCTGA--GAAAGCAACCATCCCAGTGCCTGCCTCGCTGGTTTTGAACTGCTTACAGGTACATTGCAACCCCACTCTGTCCC--------------------------GCGCGTCTGCTACC-CTTTACACATTGAGACCTATGGGCTGCAA-GTGTTTGTTCTTTCCACAAACAGAACCAGCTGCTGATAGCCAGGAATTCTGCCTCTGCTCGGACCCGGATAGCCAC-CTCCCCTCGCTCTGGCTTCTCACCTCCTGAGGCCTCTGGGCCACAAGTGCGCCAGATAGCGCACTATCATATGACCGTGGGC-CCCCAGGGAGGGACAATTTAATCTTCAACCTGCTTCTCTAAGAAGGGTGCTTTTCTGGAGCACATTTTTTGGGGGGGGGGGAGCACAGATGTTTTAGGTCTGATCATCCAACATTCTTTATCATGCCCAAGGCCTGTCCGTCCATTAACGTACACCGTCCCTTGTCTTTAATTGCAGCCTCT-----CCAT-TAGGCTGTCCTGATCCCTCTAGT------------CTAACAGAAACTTCGTCATTATCCTCAGCTTACCCCAAATGATCCTTGTGTTTAGAACCCACTCACTGCCTTGGGCACAGAGATGGCTTGCATGGGCACGGTCAGGTGCACAGCCTGTGCTTGTCCATTGTAATCCCAGTGCCCCTGGGACCCCATTCCTCTCAAACAACCAAGTTCTCTAAGTGTGAAGGTGAGTTCTGTTTCTGGCACAAGCTTCCTTTAGGGTCTAAGGGAACCC---TTAGGACATCTAAAATGAGCAggaggtgttcagcgggtagcacacttgctgtgcaaacctgaacacctgagtttggatccccacaacccccataaaagccagacatagtaacacacgggtctgtaatcccagtgtgcctacatgaaatgggaagcagaggcaggagactcttcagcagcgtgagggaccagacagcctgactgatgaagtgccagagaaccttttctcaaac---aaggtggaaggcagatcagcacccaaagattgccctctgacctccacatgtgagtcgtgggacTCAAATTCTTGAGAACTAATCATGGTTGAATTTAGTATTCTCGTGAAAATA--AACTGTCTAGAGGTCTTGCTTTTGGGACTGACCTACGTACACAATGTCAGTAATACTCAAGGCCCTGGGGACAGCCAGCTAGTGTGATGGCAGTCTTCCAAACCTGGTGGGTCAACTCCAACCTCAACTCCCCCATAGGGATGGACCTTACAAATAAAATGTTGTCTGGA-GAATCCTGCCCTATCCT-AAATATGCTAGGGCTACTCCTTTACTTAATAAGTAATAAATATAAGGTTTAAATTTCAAGAAAAGACACCTATTATGCCAGTTGCCAGGAGAGTAGTTATCTTGGAGAAATATTAGCTGATATAGAAGGGCACAAAGAACGGGGGCTACTGGTGATCTCCCTTGAACATTAGGTGTTTACCCCGTGGAAGCTTACAAGGC---------------------TCTATGTACTTTTCTGTATATGTGTGTT----------AGATTTTTCTCTAAGGTGCTTTATTCAGACCCTAGCTGCTATGCTT-----GAATGTGAGGGGAGAGCATCATGGCATGACAGTAATGTCAgctggagatgtagcttagtgacagagcgcttgcctggcatgcataaggatctgggtttgatttacccactgtgaaaaGCAAGAGGCAAAAGTATCCTCCGCAGCCAGATGGAAACAATCACAACTGCAACAACAATAAAGGCCCCCCACACTACTAGGGGTAGTTACTCCAATAACTAATGGTA-CAAGCTCCCCCAACTTGGACAAATGGCTACAGAGGATGTGGACCTAGAATTGGGCACCCGGTAAAAGCACATAAAGAACTTAAGATGCTCTAGGCCTTACAGAAGACATCCTCC--ATGACCCAGAATAATGCA-TTCTGAATCTTAAAGGGGGG-----GGGAATGAACAGGACACCCCCAAAGGGAGGGCCAAAGAGAGGAAAAGGTCTCTTCTGCTGTTCTCTGGCATAGGGGATGTCTTCATGGTCT-GGCCTGACAAATGGATGGATGCTTCAGACCTTGTCTTCCACTCTTTGGGGTAGGTGATGATGCTCATGGCAGCTGAGG----ATTCAGGTCTT---GCTACAGTGCTGAGTGTCCAGTGGAGCAAGAGTTGGTTAGCAGATCATCCTCCCATAGCTTTCTAGGTAAAttttttttttttttttttttGGCTTGGTCTAACCATATCTTCACAGTCGGCTTGACTTCTCAGTTCCTTTTTCCCttctttgagacagggtttctttgtgtagtccgggctgtcccacaa--------ctcactctgtagaccaacctggactcaactcagagatctg----cccacctttgACACCATTGACCAATCTTCTTGACTTCTAATCTCCCTCATCTAAATGTACCTGGTTACACTTGACATTTCCCCCGAATCCTTTTC--------------CAGAGAAAGCTTTGCTAGCAATATGCAATGGTCGT-------------GCCCCTCAGCAAAAAAGATTTCAAATTGTTCTTGCCGTTCATTCTGCATTCAGATTTTC-TCACAG-GCTTCCAGCTTCACTAACTAGAGATTGCCTAGGGTGAACTATACTC------AGAATCACCTGCATTCATGCAGGGCGATTAATCATCTGCACTCC-ATGTG------------TCACCTTTAAAAAGATATCTTTTTGAGATTAGTAAATTAAGAAAAC--TGGAAGGGGGGGAGCAGTTCACAGGGAGTTCATCTCTGAGCTCCGAGCA-TTCAGGAA-GGGCAGGAACGAAATGAGCTAGCAGCACAGGGAGCCTTGGGAAGGCAGGGGCCCTCATGAAATCATAGGATTCATATCAGGAAGGGAGAGGAGGGTGTGAAGAAATAAGGCAGAGCTGAGAGCATTGTGTCAGCCAGCCATGGATGAATTTTGCTATTTTCCATTAGGCTGCTCTTTTGTATATG-TATATTTAGTTTTCAA
s HiC_scaffold_1 106543681 3133 - 233722169 AGTACTCAACTTTGC-CCATGAAGTGTCTTTTTCAAAA-TACCTCAACAGACTAAGAGTG-----GCAAGGCAAATGTGAATAAGTGCTACAGTGAAGCATAAAGTCAAAGTTTCATTTTCCAGTGAAATAGAGCGTCCTTATGCCTACACTTCCTTCAGTGTCTTTCCATGACTTTGGCTCTCTTGTCACTCACACTAAGGAGGATTCATGGATTTCAGATTTCCCTTT-TCCTCTGTTCCCCAAATCCTTTTTCTCCCTGATCATGACAGtctttgaactttttctttttgctgagaaTCTTCCTTATtgctgattcttttctttctgcttattCCCTCTTCACTTCATCCTCACTGGTTATCATCCAATGCTATAAGAGAGTTTGAGGATAAGAAGCAGAGAGAATCAGATTCATTTggctagagcagtgatggtgaaccacttagagctttcaatgataaaaagAGCTGGCTGCAACATGCATgctgtaggttcaccaccactgggcTAGAGAAAGGCTAGATTATTGGGTC-AGCAGTGG-CCCCTCTTGGCTTTCTC------CAGCTGAACCAACTTTGTGACTTCTCTCTGACTCTTACCACCTTGCTGCCTTCTTTATTAACTCAGA---TCTTACAGGTATGTAATAACTGTTCTTTTTCTATTGACATGAGTTAATCAAGAACAGAGACATTTCAGTGACTGCTGTATCCAGAGTAACTTTTGGAATGCAAAgtactttctttttccatttacaGAACCAACAGCTGAGAGCCAGAAATTCTCCATG-----GGGCCCTGATAACCACTCTTCACTCCCTCTGGCTTCTCACCTCCACATCCCTCTACCCAACAAGTGTGCCAGACAGCACACTATCTAGTGACTGTGGGCACCCCAGGGAGGTACAAGTTAATCTTCAACCTGTTTCTACAAGGAGATTGCTTTTCCTGAGCACATTTTT-------GGGACAGTATAAATGTTTCAGGTCTGATCACCCAGTATTCCTTGTTTTGCCTATGATCTTTTCTTCCATGAATAGAT------CTCTGTCTTAATGAGCAGTCTCTGTAAGCCACATTTGTTATTCTAACTACACCAGTAACTATTCCCTCCTTACCACAATTCC----TCAACCACAGGTCAGCACACACTACCCATGCATTTAGAGG----TCATTGCTCTGGGCACCATGACACTTTGCCTGGGCATGTTCAGGTGCACAGCCAGTGCTTCTCTGTCACAAGCCCAGCGCCCTGGGGCCCCAAATACTCTCAAACAACAAAGTACTCTTGGTG-GAAGTTGAACTTTGTTTCTTGTATAGAATT--TTCAGGAACTAGGAGGACACATGTTGGGACATTTAAAAG-----------------------------------------------------------------------TCACATAAAA--CAGATA-AGTAACTCTAA----TGTAATCTTTTTATtctta----------------------------tctttaata--------------------------------------------tttttctatacattaaaataaaagg---------------------------------------------gCAGTATTCAAGTTCACTAGAACTAATTACAATTGAGTCCAATTTCCTTGTGAATGTAACAAATGTTCAgaagttttgttttctgagcTGACTTCAGAATTTGAGGTTAGTAATTCCTAGGGC----------ACCAGCTAATGCAATAGTAATCT---AAAAGTGGCTGGGCTACTATGGCCTC----TTATAATATGATTGAGTCTCCC----AATATATTGCATAAATGAATCTTATCCTAAAATCAAACACCATaggattgatttttta------aattcaaagacagaaa----aaatt----------aaatctattaTGGTAGACACT-GGGTAGTGGGTA-CCGGGAGAGGTAATATTTG--------GGG----------GAGGCTTGCTGGTAATATTTCTTGGATA----GTGTTCACTTTATGAAATTTCATAGTGCTATATAAGATGCACACTGTAATCTATGTGTTTTTCTGTAGATGTGTTATGctcaaacaaaaattattttc---agtggcTAATCAGCATTTTGGCTGCTGTGCTTTTGAAGAGGGTAAGGTGAGAACATTATGCTATGATAGTA-------------------------------------------------------------------------------------------CTAAAGTATC---------------------------------------------------------------------TACTTTAATAGTTCAAGATAGCAAGTTCCCCTAATCCCAGTAAGTAACTGTAGAACAGGCAAGTCCCAGATCAAGATATCAGTAGATGTGCATATAAAATGTAAGGAATTCTAGGAATTATATACTACACACTTCTTATGCTCTTGGACCACGTACTTCTGAATCCTAAAATAAGGAAGTTGGTGAGCAACATGTCTCTCTCATTAGGAAAGTCTAAGTAGGGAAGACA-CTCTTCTGC---TCCATGGCAttg-------ctttgtggcccaggcttgGCAA----ATGGATGCTTTGGGcctggtctttgaatttttggggcaGCTGACAAAATTGAAGGCAGGAAAGGAACAATTCAGGTGTTAGGAATTCAGTGTTGAGTACTCAGTAGAAGGAAGGAACCTTAGCAATGGAACATGGAGCAGCTTTCTGggtaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggtgctgAGGAGCTGAAT-------CCAGAGCCTTGTTCACGCT----AGGCAA------------------GGACTGTACCACCAAGCAATATCCCCGTCCCTAGG-CAGCATGTTTTTGTTGCAG-GATTTGAGTTCTCAGCTTTCAGACTTTTGA-----------GGCTCTTCATCAAT----TCTGAGTATACTTGATTATACTTGATACTCTTCCTAAGTCCATTTTCTGATTAAAATAAGCAGAGAAAGTTTTGTTATTTACATCCAAGCACCTTGACTAGTACAAAAGCTCGCCAGCAAAAC--ATTCTAAATTCTGCTTGC----AATTCTTCACTCAAATTTTTATCATATCTCTTTTAATTCCACTAACTAGAGATGAA--GAAGTAAGCTatgctcctgtctcaaaaaactaacatgCTTGCAGGGCAACTAACCCTTCATACTTCAATGAGAGTTCTTTCAACTCACCTTT------ATCTTTATTAGAGACCAGTACATTAAGAAAATAGTACAGAGGAGGGAGGAGTTAAGGAATATTTCATTGCAGAGGACGGGGCATTTCAGGAATGGGCAAAAATGAAGTAAAGTACCAAGGTAGGGAGGCTTAGAAAGTCAGAGGGCGCCATGAGGTCAAGAGATTTATATCAGGCAAGGAAAAGAGGAAACCAGGGAAT-----AGGGCTGAGAGATATGTGTCAGAGAGCCAATACAAACTTTTGACATTTCACTTTAGATTGGCCTTTGctagatgatttttttaaattgcaa

a score=65398
s chr3            96978396 2226 + 160039680 CTTTTGTATATGTATATTTAGTTTTCAAGGTGGGTAACTGGGAACTCCTGGCCTTTTAGGGTTCTGGGAGTAATTACAGGTGATTTATCGTGTTATTGTAACTCGGAGCTTATGCTACTGACACCATCAGGAGAGGCAGTACGGGTTTAGGATTCACTCTGCTAGACTAATCTTCATAAAAcaacgggagtgccctcaggaccagctacagcaga-gaaactcatctcctttgttgattgggttcctaggctgataAGCTTCAGCAGGGCAGAGA-CTACGAGCCTGGGACAGTCACACAGATCTGTAATTGGTTGAACAATCTTGCACAAATGCTgatgatgattaatgaatctgtgtcaacttaaagggaggcccctaggcacttgctgcaggtcaccgtcagcatctttattaatggcttggatggattctcagaacatgctgatcaaatttgcagaAAGGGTTAGAGGCtatgttcgatgacaaaaccgggatttagaaagatctcggcagactcctgtgacatcccagatattacaacatgggatttagtggggataaatgtaaaatcttgcacttCTCCCTCAAGTGCC------ATTTGTAGAGACTTGGAATCAC--------ATGGACGCAGCTAAAGAAAGTACTTTTTCTAAATCGGGCATGTGACATGCTACCAAGAGCCAGGGACCCCTCAgccagagcacacctggaga--gtatggcttctcct-ggcattgcatccaaagagcagt-ggaacaaactggatggtgctcccagcagcagg--ccagaccacgaagggtctgatgccatgttctag---gaggaacaactgCTGGAGTTACTTATCTGATGCCCAGAGGTGTC-AAGGTCACACCACCCATGTT----------------TGGTCAAGGGGAAGGCAAGTTGGATGTCT-CTAATGGTCTCAAAGGGATCAAACACAAAACCACTAGTGGGTGGGACTTACAGCTTCCGCATACCTTATAAGATTCAGGCAACTTTTCTGACAGCTAAGGAAGAAGGAATGCACAAATCTTAGGAATCAGGCGTTGTTTAGAATCTCAAAAATGCCACTTAATAACA-ACACTTTAGGAAGTTTTCCCTTTTGTTTGCATGAAGACGAAAATACCAAGACACCTAGCATATGGTTGGCTCCATGCAGGGATCTGACAGCTGATAGCTATTTTTATAATAGTT-TTGCTATAGTTGCTTAAGAGTTGA--------------------------------------------------------------------------ATGAAT-------------------------------------------------------------------------------GAACAAATAGG-------------------------------------------------------------------------------------------------------------AGCTTGACCTATGGGCCAGATATAAAGTAAGCCATAATCCTAAA--AGCTTTTTTTTTTTTAAATTAACACCCAACTGTATG-TAAGCTCTGAGCTAATCATCTGCCATATAACCTTATGAGCACAATTTAATATAAT------GTAGGAATATTATATGACAATTCTATAATAAATATCAAAGAACATTTCAAGATATTGACATGAAGAAAATTATATAATTAATTTCACAggaacattgagtaggaagcaattaattctaactggaagattaggaaaggcctcttggagaatgtggcatttgagctgggcctgaaaggacaggagagactttgattgatgggagttgggcgggggcaaggccttccaggctggggaatggcttaaacaaaggcacagaagtaATTAGCAGAGATAATGGGCCATCTTCCCAGGGCTGAGGATGCC--CTTTCATATAGACGCCTTCATCATTGGCATCCCCGGTGATCACA-GTTAATAAGAAAGAGCAGGAGACACT-TTGCTTCTGGTGAGCTGTTGCCATTGTACATGTATTGAGGTTATCTTTATTCTTTCTGGTTT-ATTATTCAAAATGGTAGGATGCCTATACCGTGTGTTTGCAGAGTTCTGAATACTAAGGCAGACG-ACTCTATGGTTCACAG--GGAGCATCAG-TGTGGGAAGT-----------CAGGAGGTCTCTGGTCA--CATGGAAGCAGGCTTTCGTTACCT-CTTGGGAGTGGCTATGTGGGGTTCGTGAAGGCCATTTATGGATGGATTAAGCTGACTA----GAAAGAGGCCTGAGGATGAGGGCCCATTGACATTCATACCTGCAGGACACTCACTGAAGTCTTTGTTCAATCAAATAAGTCCAGGGAGGAGGAGAGAGACTGAGACCCAATGGCTGGCCACTTGGGGAGGGAGACTCAA----------------------GGATGGATGAGAAGGGACA-TCTTTCTACTGGTCTGTCAAGGTTCATCTCCATCTCACCTCAAGCA---------------------GGACTGTCCTGGCTCAAATTGATCGCAACT
s HiC_scaffold_1 106547977 2494 - 233722169 cttttttgattgttcattttgtt---agagTAGCTAATTAGGAG-TCCTGGCCTCTTAGGGTTCTTGGAGTGATTACAGGTGATTTATCATGTTATTACAACTCTCAGTTTATGTTACAAACACCATTAGGAGAAGCAGTATGGGTTCAGAATCTACTTTCCCAGACTAATCTTCATAAAACAACAGGAGTTCATTCAGAACCAGTTATGCCAGACTAAACTCATTTCCTTTGTTGATGGGGTTACTAGCCTGCTAGGCTTCAGTAGGATAGAAACCCACGAGCCCTGTATAGTTAAACAGATTTATAATTGGTTGAACAATCCCATGCAAAGAC---TGAAGATTAAGGGATCTGTGTCAGTTTTAAAGGAAGTCCCTAGGCATTTGCTGCAGGCCCCAGTCAACCTTTTTGTTAACTACCTGGATGGGTTCACAGAGGATGTTGCTCAAATTTACCAAAAGGATTAGTGGCTGTGTG-GTCGACAAGATCAGAATTTAGAAAGAATTTAGTAGACTGAAGTGATGTCATAGACATAACAAGATGGTATTTAATAGGAATAAATATGAAGATTTACACTTAGCTCTGAGATGTCAGCTATATGTGCAGAGGCTGGATGTCACTTCATATAACAACTGCAGTTGAGGAAG--ACAGACCCTGACGCAGAGGCATGATAT----TCCTGACTCAGCAGGATCTCTGTC---TCTTCTTTGGAGAGGGTATGGCTCATCTTGGGCACTGCCCCTGAAGAGCAACAGGGACAAAGTGGA--ACAGTTCCAGAGGCAAGATCCAGGCCATGAGGAGTCTGAAGCCATTCTGTAGGAAGAAGAACAACAGATGGA-----------GAAGCCTTGAGATCTTGGAGGTTAGCccacttgtttttaaattattttcaggctGCTACAATGGAAGATGAATTAGATATGTGTTGATGGTCTCAGAGGG-TACAACTCACAGCC----GTCGGTGGAAGTTGCAGCTTC-----------TAAAATTTAGGAAACTTTCCTAACAATTAAGGAAGCAGGAATATAT-AGTGTTAAG----AGGTGTGGTTT-GAATCTCAGACGTGCCACTTAACAACGCACAGCTGGGaaagttttgtcttttattttcatg---------ataCTAAAACACCTAGCATATGGTCTGCTTCACAAAGGGACTCAATA---TATAGCTGTTTTTGTAATGGTTGCTGCTGTAGTTGCTTAGAAATTGAAAACGTGGCCTCAGGTGGGAGTGGGTTTGAGCATAGTTGGAATGATGAGAAAGagattttatgtcttttatgtGATGAATGGGGTGATTCTTAGGGCCTGTTTAATAACGGGATTTGACATCTCTGGAACAAAGTGAAGTATATGTcccagagaaaaaggaataaGGAGGAGATTTGCCTCATATCCTTACTTTCGTTCAGATTTGTTCTCAGAACAGGTATGCTTTGTGATTCACAATGCCTGAAGAgttaattttttctcatattaTGAACATTCAAAGCTTGACCTATGGGCCAAGTATAAagtaattcataattttaaactaGCTTCTTTTT------ATTAAAGCCAGGTTATACATTAGGCAATGAATGAATCATCTTCCATCT--CttaataatcatattttaatataGTATCAGAGTAACATTATTACTtgataattatataataaatatta------cttttaatatactggaatg-ggaatattatatGATAAACATCACTGGAACATTGAGAAGGAAGCAATTAATTCTGACTGGAGGATTAGGAAAGGTTTCTTGGAGAACATGGCATTAGAGTTGGGT---GCTGGACAAGTGAGATTTTAATAGATGGGAGTATGGTGGAGGCAAGGCTTTCCAGGTTAGGGAATGGCTTAAACAAAGGCAAAGAAGTAATTAACAGAGATAATGACTCATCTTTCCAGGGCTAACACTGCCATTTTTCTTGTGGCTACCTTCTTCATTGCTAT---CAGGGACAGCATTTTGATGTGAAATTGTAGGAAAAAATGTTGCATTTGGTGA---CTTGTCATTATGCCTGCACTGAAG---------TTCTTTCTTGTTTCATTATTAAAATTGCTGAAATGCCTACCCCATGTG--TGTAGAGACCTGAACACTAAGGCAAGTGAACTGAGTGACTCAGAGATGAAGCTTCAGATGATGACAGTGATGACCAAGAAAGGAGGTCTTAGACTATGCACAAAAGCAGAATATT-TCACCTGCCTGGAAGAGGCTTTTCAGGCTTTGCAAAAGGCTTTTCCTGCTAGTGTGAGTCCATTACCAGCAAAGGGATCTGAGAATGGGAGGCCATCAATA---------GCAGCCCTTCCACTGTTATTTTTACTTACTCATATATACACTGGGCAGGCTTGGGAAAATGAG----AATGGCAGATCACTGGGGAAGCAAGACCCCCCGGCTAGTATGGTTTTCCCCTTGGATGGATGGAAAAAGATGCTAATTCTACCTGTC--CCAA----TATGTCCAACTCTAGACAAGCATTTGGACAGAACAGTGCTTGGGGGCTGCCTTCACCCAAATTTATCACAACT

a score=19369
s chr3            96982757 745 + 160039680 ATGGGAATTAACCAGCTTTGTGCCTTGGCTGAAGA-GCA------GAGACAGAA--GGGCC-CAGCATTAAACCAGAATGAACAAAGTACTCATCTGGCAGCCTGACCCGTTTCTCAGCTTTACCATCTGGTGAC--TTCTATTTCTGGAGGATTTTTTTTCCTCTGTGTTCCCATCACTTGATGGCACTGACCATTCTCCAGGCATCCCAGCTCAGTGACATTT-GAGTGTGTGTCACAAGATCTGTGGTTCTGAGGCAACAGCAGCACACAGGACCAAGGGGCAAAATGATCCAGGCATATCCGCAAAGAATTATCAGCCCATGATGGACGGGGACTGAGCATCGTCAGCCACGGGTTCTGTCAACCCTTAGTGGTCA-CTGGCAAAGAAGGCGTGTCTGCAATGACTGTGCCATCCCCAGAAATCCTGATGTCTAATGACCAAGG-TGGTTTGATGA----------------TGAACTTGCTTTCTTTAGATATTATTTCATTCTTCAAAA---AGTTCTCTCTGAGTGTAACGAAATATAGCTTAATTATCTTGCCTTTGAAAAATGTGGCCCATATGTTAATGTGTCTAAAAAGCAGCTCATTCATCCATGGCAAAGGTCAGT------GAGCCATG-ATTCCAGTGTTTGGGTCTGAAATATACGGGCATGGGACAGTTGGGAAATCAG------TCTGCCCCATCTGTAACAGGCAACGACTTGTTGGAAATCCACTTT-------ACCAGGCTAGAAGTCAGAAAGGTGATCTGGGAGGTTTTTGTCGTG
s HiC_scaffold_1 106563758 790 - 233722169 atgGGAATAACTACTCTTTCAGCTTTGGCTAAAGATGTAAGAAGTGAGTCAGGAATGAGCCATAGCATTAAATCACTGAAAGCAAAATAACAATGTAGCTATTTGACTTATTTCTCAACGTTAC-ATCTGTTTATGTTTCTAGTTTTAGAGaattttttcccctccat--tcccATCACTTGAACATACCAACTATTTTCCAGGCCTTTCAGCTCAGAAACACCCAGAGTTAATGTTGCAAGACCTGTGGGTCTGAGGAAATGGTAGCACACATGACCAAGGGTCAAACTGTTCCAAGATGCTTAGGAAGGAAAGGTCAATCCATGGCCAGCAAAGATAGATCACTGTTGGCAACCTGCTCTAAGAGCCCACAGTTGTCAGCTAATGTAGAAATGATGCCTATGATGATAATGTCATTTCTAACAGTTCCAATGTCAAATAATTGAGGATTTTTTGCtgaatttgcttttttctgttaaacttgatttattttgatgtaatttcattcataaaaagataattatttagatatataac--aatgtggtttacttattttgtctttgaaaaactTGACACATAAGTTAAcatatctaaaaacaaaataaaaccaataaagcaACCATGTGTATGTTGAAGTCATGCATTCTAATCTTTGGTTTTGGAAAACCTGGCTATGgaacagaaaggaaattaaaatctttttgtcTTGCCTATAAAAGACAGTTCCTTGTTACCAATATACCCTAGCCCACACCAGG--AGAGGATGGAAATGTGATCT--AAGGGTCTTGGCATG

a score=23256
s chr3            96988725 990 + 160039680 CATGATAGAACTCCAAA-TGAGCTGTGGAGTTAGGCTGGCTA-----GGAGAAGGTAGAAAG-----CAAT-TCCATGGAATGCCTCCCTTGTGCCTGGCTCTGGACCACTGC--CATACATGGTCTCTTTTACTCCCCATACCTACTCTGAGGTGGGCAGTAACT--AGTTATACACAGAGACTCTGAGTCCC---------------TAGAAAGATCAACTAGTGAATTCCTTAGA-----------------------ATTGTTACATAAGGCATACCTACTAAGTGAGA------GGAAG-------TTAGTTGGCTTATAAAGGAAAAGACCCCGTACTCTGGTTCAGTGACAGCTCCTCCTTCCCCCAGTCAACGCATAGGTGACTCGCCGCCACTGGGCTTGATGGCAGCTTTAGAGATTCTCTTT------GCTGCTTCTTCACAAGGCAGAGTGAGCTTTGGACATCCCTGTCTCTTGCATGTGAGTTATTTGTGATAACTTTCTGGAGCCAACATGATAGATCTTTCCCATCCCTGTATCTTGCATGTGAGTTATTTGAGATAACGTTCTGCAGTCGGTG-GGATAGATCTTTCCCAGAAACTTCTGCTTTGACTCGAGAGAAACAAAACTCAAAGCTTCCTGAGTACTGTTGTATATTACC-ACTCGGCTTCAAAGGAATCCCAAGTGGAGGAGGCAATATATTGTTTTAATTACAAAGGGATAATAGCCTCAAGCAA--AGAAGTTTTACCAAGAAGAAATGAGTCTCATATAATGAGCAATAAAAACTCCTGCAATTACTAGCAATGCGTTGATTCA-GCCAGACCTCAGTGAGA-TCGGAGAGAGGCCAGCTTCCAGCTGAACTCCATTCTTGTCTGCCCCAAACATTTT------------------CTTCTTTTTTTGCTTTTTGTAATTTCACCTCGTAGAGGAACGTAGCCTCTTTCCATG-------AAGCGTGGGTTAAACACATTTGTACACAAAACTAATAGAACTATAATATGCTCTTTCTTCCAGA--TTTTTCCATTTTAAAACGTTGGCCCAGCGAGACCAGTACTTAAT
s HiC_scaffold_1 106564544 997 - 233722169 CATGATAGCTCCCCAAAGTAAGTTTTGGGGTT---TCAGCTACTTTGAGAGAAGTTGGAAAGGGAACTAATATGCACAGAGCATCTCCTTTGTGTTTGGCTCCGGTCAACTGCTTCACACACGGCTTTATTTAATCCTCAGACTCTTTCTGAGGTGGGCATTACCCCAATTTGTAGGTAAGGATGTTGTGGCCCACTACTTATGCCGCTTGAAAAGACTGAAGAGTGggttcattaaattaaaaaaaaatttatacgacatatttataaataaaccaaATTTTCCTAGCAGAAAGTCAAGGAAGGGAAACATTGGTTTGATCAGAAAGGATAAGACCTC---Ctctg-ctcagcagca-------cagagcccaACAAATCCACAGAAGAAT----GTTACTGG-CGTGGTGACAGCTTTGGAGATGACCTTTTATCTCACCTCCTTCCCATACTGAAAATGGTGCTTTGG----------CTCTCAC------------------------------CCAGCATG----------------CTTGTGTCATGCATGTGGGTTACCAGAGGtaattttctgaaattaatatgaaaaaatgtttcttaGAAGCTTCTGCTTTGACTCAAGAGCAAC-----TAAAAGTTTTCAGAGTACCAGGGTCTACCGCTTacactattttcaagaaatcccAAATGGAGAATGCAATATGCTGTTTTAGTTACAAAGGGGTAATAGCCTAAAGTAGGTAGGATTTTTAACAAGAAGAAATAAGTATCACATAATGAGCAATAAAAG-TTATGTGATTATTGTTGTTGCTTCTATTCAGGCCAAACTCCAGTGAGACTGGGACATAGGCCAATCTTAATTTGAATTGCATTTTTCTCTATCCCATACATTCCACTCTTccctgattttcatttcttttttccttttacataatTTCCC-------AGGCA---------TTTCCATGAAGAAGAAAGCTTGGATTAAATGCATT--TACAGAAAAGTAATAGAGATGTAATATGTTGCCTCTCCCAGAGgtacttacattttaaaactttgtccTAGAGAGGACAATACTCAAT

a score=28690
s chr3            97006766 739 + 160039680 GTGCTTC-CAAGTA----------GCATCTTTGGTACaaaaaaaaaaaaaaaaa-----aaaGCATATATTTTAAAACTACGGTACATGCTACAAACAGCTTTTAATCCCATGTGTCTT--------------------CATATGTCATGTCTACACTGAGCATGATAATTTCCTAGGAATTGAGATATAAATATGCATCCAATGAGTCCAC--GCAGATAAGAATAACACCTGTACTTTTGGAG-CATGGATCAAATAGCC-AGGCTATGCTCTTCATATTTCAGGGTATATGCAATCCCCCTATGGAGTTGGAGAGAAATCCCATGCCCCAATATGGCAAAGAATGGTCTACCCAGAGCCCTAAACCCATACGACTGAGCAGTCCCCTGGGGCTTTGTGGCA-CCAGTTCGGTTTC----------------TGGGGAAATGTGCAGAGTATGTGGCCTTTATGACCCTGATACATGAGTCTCTTTGGAAAGTTGCCATTCTCAGACATCAGGCATGCTGATGAGCAAAGTGCCCAGAGTGACTCAAGGGCAGAAATACCAGGATTTAAAAATATTCCCTGGGCAGTTTATAGGTTGTGTACAAG-----TTACTCCA-GTCTCCATGCGTGTGGTGTGGCAGGTGGGGTGTCTGTGTTTATTTATTCCTGGCTTGTGATTACTCAGAGGGGCTGCATTTGTCACACCCTGTCTCCTCTGT----GACAAGGACCTCTTAGAACCTAGCAACCTCCGGGAAGTGTTGGGCAGGCTG-GGACTTTTGTACTCTATGATGGAGACCA
s HiC_scaffold_1 106583730 776 - 233722169 GTGCTTCTCAAGTATAATCACTAGGCATTTTTGGtgataataaagaaaatagtacTTTTAAATCACACATTTGACAACCACCGCACATAGTACAAGCGGTTTTTAATCCTTTAAGTCCtaagaagctgttttctttttccatctgtTATGTCTGCACTGAGTCTGATAAGTTCTTAGGAactgatatataaatatacatctGATAAGTACACATGCAGATAAGAATAACACCTCTGATTATGAGGATATGTATCAAATATCCTGGGCTACAATCTTCATACTTGAGGGTATATGCAATCCCCCTTTGGGGTTGCAGAGAAATCCCATGTCTCAATATGTTAAAAAA-----TATTCAGAGCCTTAAATCCATATAGTTGAGAAGCCCCTTGGGCTTTTATTGCAGTCATTTCAGTTTCTGAAGGCCTTGATCATTGGGGAAATGT--AGAGTATGTGGCC-TTGTAACCATAACAAGTAAGCCTTCTTGGAAAGTTACCATTCTCAGGCATTAGGCATGTCAATGAGTAAAGTTCCCAGAGT-ATTCTAGGGCAGAAATaccctaatttaaaaatattcttcaagtGGCTTATCAAATGTGTACAGGTTCAATTACTCTAGGCCTCCACATGCAGGGAG-----GGTGGCATGACAGTGTATATTTGTTCCTCTGATGTGATTATTCA-AGGCACTGCACTCAGCTCGCTCCATGTCATCTGTAAGCAATCAGGACTGCTTAGAA----------------GAGAGAACAGCAGCTTGTGGCCTTTTGTATTCTGGGGTAGAAATCA

a score=16787
s chr3            97010178 696 + 160039680 TACATTCAGTACACAGACTTATATGTCTGTATAAGGATAAAACTTTTACAGGAAAAAATTG------CTAAGTGCTTGAGAACA----CCAACAATCTCTTAGCACAATGAACCTCTAAGCCATGTTTTAAAATACATTGCTTACACTGTTTTGCCATGATTTTATTCTAGCCCTTCTTGGATGGTTATCTTCCTAAACTGATCACAACTAGGAGAGTCTTGAATGTATGCAGAGCTGGGACAACT-GGTTTTCTGGGGACAATTAAGTAGCCTAATCCTCTGTTTTCATGGGCTAATTTTCTTTTGTTTTAAAGTTATTCACCATGTTGCATTTGTCTCTAGTGTTTGAACTTGATGCAGACTGGGGTAACCTCAGACCACAGAC---------------------CCTCAC-----AGAGCA---------------CACTCCTGCCCGTGGTGGCCTAGGTCC-----TCTGGGCAGTGGCTCCCAGAACCCAGTTAT--GTGAGAGGGTAAATGCTAAACAATAGCAGCGGAAGTTGCAGTGGGCTCTGGGCTGATAGCACATCCAACCGA-----CCGGGCAGGCGAGGGACCTGGGCACATTTCCTCCTCGGTGGCGTTTCGTCTCCTTTGC-TCTGAATCACATTCTTGAGAACAAAGAGTCACAGCTCAGCATAACTCAGTTGCCATAGCTCTGGGGGAGACAAGGG-----------------------TTTTGGGGAACTGCCTGTTCATTCACCCCTCATAGATTCAGGTGAG
s HiC_scaffold_1 106587633 730 - 233722169 tgtattaagaGCACTAACTTAGGTG-CTTCATAAAGACATGATtattaaaggaggaaattataatgactAAATGTAGACAAACATGCTCCAA--ATCTCTTGGAGTAGTAAACTTCCAGG---------ATAATATAATGTTT------TTTTCCCATGAGTGAGTTTTAGGACTCCT-----GGACATCTTT-TAAAATGGCTACATTTAAGAAAGTCTAGAAAAT-TCCAAAACTGAAACAGTTTGGCTTTTAGAGGATAAGTAAGTATACTAGACATTAGTTTTA----------------------TAAAACTGCTCCATACACTGCATTTTCATCCAGTGTTTCAGCATGCTTCAGA-TCCGGTAACCTTAGACCTCAGACTGCCCCTTTCTGGCCTGTTCCCCTCATCTGAAAGAGAAAGCCCTTCCCTATAGCAGTCCTGCCCCTGTTAGCGCAGGCCACATAGTCTGGGCAGTAGTTCCCACAGCC-GGTTATCAGGAAAGTGGTGAGTGCTGAACAATAGCAGAGGAAGCTGGGCTGGGCTCTGTGCTGATAGCCTGGCAGACAGCATGTCCGGGGCAGGTGAGGGACCTGG-CACATTTGCTTCCCAGGGGAGCTT-GTCTCCTTTGCCTCTGGATCAGGCTCTTGGGAACAAAGAGTCTTGGTTCAGCATAGCTCAGACCCCA---CTGTGGGGCAGACAGGGGTTAACCTCATAAGGGCTGATTTCTTTTGGCAAATTGTATGCTCACTGGACCTTTGTGGTCTCAGGTGAG

a score=37182
s chr3            97012594 1210 + 160039680 CCAAATTCTGACAATGTGCCCAGGGTCAAGCTAAATGCC---------AGCTCATTTAATTCTCACA------CTTTGAGGGGAAAAATGTTACTGCATCCACTTTTAAAGGCGAAAGACTTGAGTAAAAT------------------TCACACTCTTAGGAAATAGCTCTGTAGAATTAAAAACTCCAGGTCTGTCTTATCCTTTga--------------ccctatgctcttcagagccacactcggt----------------cagacagacaaggtctcagccttcagggaacttctactgtaataggaaagaAG-----AAAAACTCCCAGGACCTAGCTGACCCACGAGAGTG-------CAAACTGGATGGCAGTCAGAGCCAAGACAGCCAACC---------------TCAGCTACCCATGT------------------GAATAATTTAGGGATGTCAGTCTAGCCTTGGAA-TGTGAGCTTGCCTATCTAATA-TTTGAATCATTGCTGTCAAGGTACTGTGTGTATATGGAGGACTTGAGGTTTAACATTAGTTGAGAGCAGTATGGAAACACTTGTACATTCGATATGGGAAATGGCCATTCTTGCCCTAAAGAACATTTAATTCATCTTGATCATCAGTCTTAGAAG--------------GAGAGTGAGAGAGTCATTTCTTTCCAAGACATTTCTCCTGG-AAATATCTGAAGGTTCTAAACATGACCAGTGATCTGCTGGGCCTTTGTTTGAGAAGAAACAGAGACCTTCCTGAATACTAGCAGAAAGACACCCATTCGTCAGGTTCATCCCTCAAAGCATCTTTACTCTCCTAGGCTTATGGGGGAGATTTGCAGGCCAGAGACAGCCGAAAGGGCCAATCTTGAGTCTCGGCCTTCTGGGATAGAAA-TGAACTTCAAAAAGGTACATGATTATTCATATTTCAGCCTGTCTCCATGAAAGTCAAACATTTTATTTTTATTCTAAGTACTTTGGTAGACAAAGGGCTCTCTGCTGCCCTAACTGTTCTTACAAAGACAGCGAAAGATGGTGTAAAAATATATTCCAACTGATGGCAATTCTTCAAGGAAGGAAAATGGATTTAGAGCTTTGTAAAGAGCTTGTTACAGGAATAACAAATGTCGAATCACTCATCTGAAGCTTGTAATTGCCAGGTCAAAACGTTTGGGAAATTTTC--CTGAGTGTTGCGCTGGCTGGCAGTGCTTTCTTACCGCTTTGGTTCATTCCCACACACATTTACCAAGCCTTTACTGTACACggtgatgtggaaaagcagctccactcagactccaaaagt
s HiC_scaffold_1 106588536 1300 - 233722169 CTAAGTGTTTACAATGTGCCTGGGATCCAATTGAATTCCTTACATGTGAGCTAATTTTAGTTTTGCAACAGTTTTATGAGGTGAGATCTATTATCAGCTCC-CTTTTATTGGTAGAAAACT-GAGTAACAGGGAGTCATTTCCTTGTAGTCACAAAATTAGCAAGTATCTTGCGAGAGTTCAAA--TCCAAGTCTTTCTTATCCTTGGAAATCATCTCTCAGCCTCTTTGTTCTGCAGAGCCATGCTCTATGTTCAAAGGTGTGAACAAGAAAGGTATAGTCCCTGTCTCCTGGGAACTTATAGTGTAACAGGAAAAAAGGGCAAAGAAGTGTTTGTTACATGTATGAAACATGAGAGCGGAGCACATAAGGTTTACGGCAATCACA-CCAAGG-AGCCAACCCAGGCTGGCTATCAGTTATCTGCCTGTATCTGTGAAACCACCTTCTAGAATGTTTTGTGAATATAAGTCTAGCTTAGAAAACATAAACTTGCTTACCCAATACTTTGAATCTTTGCTGTTAAGGTATTTTAGGTGTCTGAGTGGCTCAAGGCTTAA----AGTTAAACTTGGTTCAGAAATACATGTACATTCATTGTGGAAAA--GTAATTCTCTTCCTGTGATTTGTTTACTTCATCTTGCCCAACAGTGTTTGAAATTCCACCTGGCAAAGAGAGTGGG-GATTCTTTTCTGTGCAAGACATTTCTTCTGGCAAATATTTGAGGATTCTAAATATGATCGGTGATCTACTGAGCTTTTATTTGAGAGGAAACAGAGTCCTCCCTGAATAA-AGCACAAACACATTCATTCATCagttttatttc-caaaatgtcTTTACTTTCCAAGTGTTAGTGAGAAGATTTGCATGCCAGAGACAGTAGAAAGGGATAATCTTGAGTGctgatttcttgaaataaaaatttaattttaagaaagtaCATGATTATTCGTATTTCAGTCTGCCCCCAAGAAAatcaaatattgtatttttattctaagTGCTCTTTTGAATAAGAGATTC-CTCCACACTCATCTGTTCCTGCAAA-----------ATGGTTTAGGAATATAT--CAACTGATGGTGATtctttgaaacataaaaatgGCTTCAAAGCCTTAC-----GTTTATTAAGGGAATGGTAAACATTGACTATTTCACCTGAATCTTGCAATCAGCAGGCCAAAAT-TCTGGGAAAATTTCAACTAAGCTTTGTGCTATCTAGCAACAATCCCTCACCATTCTCATTCACTTTATCATATGTCTCCTGAGCTTTTACCTTACAGTATAGTGGAGAAAGGAAA---CACTTGGAATTGAAAAGT

a score=9640
s chr3            97024827 396 + 160039680 AGATCAAGAAATAACCTCTTTTCTCTGGTGTT-AGTAGGTTAAGCTC-AGAGACTTTCAGCTAAGTCCTCTAACAGATGTAGGAGGCTCTCTTACCAGTTACCTGACCTACTCAGTCCTCAGGGAAGTCCCCACACTTCCCAGATTCCGTGAGAGAGCTGGCTTCTGTTCC------TAGATAAATTGCTCGGCCCACCAGGGCTTCAGCTTTCTGAAGAGTCCACTCAACTCTTCTTTGCTGCGCTGCCCCCCATCCCCACCCCACACTGGTGTCCCAGCATCTGTGGTTTCGTGA----------------------CTTCTA------------TCTGTGTAGAGA-----GGTCGCTCAGAGAGGAATTTC----TAGAGCATTTGT-------GCATTTGTCTCAGAGGCATTTGATTTCCCAGAAGCCTTCAGGAGGAGGGCAGGAAA
s HiC_scaffold_1 106616623 436 - 233722169 AAGTCAAGAAATAATGTCTTTTCTCTAGTTTTTCATAGGTTAAGCTCCAGGGACTTTCAGCTAAGTGCTTTAGCAGATATACAAGGATCTCTTACCAATTAATTGGCCCATTTAGCCTTAAGGGAAATTCCCATGTTTCCCAGATTTTTT--GAGATTTGATTTCTGCTCCTGACCTTAGGCAAATTGCTTGCCTTCTCTGGGCCTCAATGTCTTCATCTGGTC---CAACTGATCTTTA-------------AGTTTCCTTTTAGCTTTCATGTTCTTAAATCTGTGATTCCTTGATAGCTGATGGAAATGAGATATTCCTTTAATAAAACATGGTTCTGTGATGCTAACTTTGGTCTGTCACTGAAGAAATTCCTCTTCTGACACTAGTTTCTAGAGCAACTGTCTGAGAAGCATTTAGCTATCCAGAGACCTTCAAGGGGGAATATGgaaa

a score=21691
s chr3            97025320 482 + 160039680 AAGAAAAACTTCCATGGAGAAAACCAGAAGAGGCAGGTCCAGCCGCAGGGACTCAGCTAGAGAAACAGGAATCACTTG---AATCTTGGGCATGATCCCACTTCCATGACTCACCCCCTCCCTCTTCCAGAAAGCCAGGCACAGGAATTAATTTATGGGTTCTGTCCAGAGGTCTTTAAGTAAACAGTGCTAACAGCCCTTTCAGTTATCCAGACAAGCTTGATTTTAGGCCCCTGGGAGGAAACTAATGACTTGTAGCTACTTGGCTATTGTTTTCCGAAAACAATTTGGCTTCCTTTT-AGATAACCTCGCAATTCCTTCTTTACAAGTTGGGGTGCTGGGGCCAGGGCAGGGCGAAGCTGGCCAGCTCCAGAGCACAATGCCCTCAGTCAGGCC----------CCTTTCTT---AAGAACTTTAAAGGCACCTGAAAGTTTGTTGAGCAGGCAA-----------------GACTCT--GTGAATGGAAAGGACCTTTGTGACTCTGCCTGTCT
s HiC_scaffold_1 106617566 493 - 233722169 AAGTGAAATTTTCACCCAGATTATCGTATAAAACAGATC-------AGCTTCTCAG--GAATGAACAGGAATCTCTTTGCCACTCTCAGGCATATTTCTACTTCCATGACTCAcctcttctc-attccagaaagtCAGGCACAGGAATTAATTTATGAGTCCTGTCCAGAGGTCGTTAAGTAAACAGTGCTAACAGTCCTTTCAGCTACCTAGACAAGCTTGATTTCAGGCCCCAGGGAGGAAGCCAATGACTTGTAGTTACTTCTCTATTGTTTTCCGAAAACAATTTGACTTCCTTTTCAGATAGCCTTG-AATTCCTCCTTTTCAAATTGAGGCACTGGAGCT-----------GAGCTGGTCAGCTCAGGAGCACAATGCTCTCA---AGGCAAGAAAGAATGCCTTTATTATAAGGAGTTGCAGAGAAACCTTAAAAGATGGTGGGCAAGCAGCTATAGGGAGTTCATATGACCTTGGGTGAATGAAAAGAACTTGTGTGCCTCTGGCAATCT

a score=20373
s chr3            97027670 786 + 160039680 ATTTTGGTTGAATGAAATCTCCAG--CCTGGACTCTTGG-------GGGCCTAGTATTTGCCCCCACACTCTGGCTTTAGTGGGAATGA-CCAGGCTTGCCTGGCATTAGGTTAACAGTGATGATGACCGTGAGGGTCATGGTGGCTGTTCCTCTTCCTCTCTTTCTTCTTCTCTGGCTCAGCCCACCACAAAAGAGTTCTGAAGTCTGGGATCCCAAAGGAACT-------CCTAAGCCAAAGATTAGGTCTGCATAAGATTTTAACTTTGCCTTTGGGGATTAAAAACTTGACATGTGATGAGAGAAG------AGAACAAAACATCAAGAACAAAAAAGTCTAAGCTTTGTTTGCTTTCTGCTTCTTGGAACAAAGTGAAGTCttgtttgtttgtttgtttgtttgttttgttagttagtttgATTTTTGTCACTATCTATCTGGAAGGTAACCGTCCTAAAGGGAATGGCTTAAGCCTGCTGTGTTTGTTTCTCAACCAGCAGAAACGTGTGACCTCAGCTCACTAACCACAGCTCCAATTGCCCATTTACACCCTCCAATTAGGTGCTGGGGACTCATTGCTCTTGCAATTAGCTGCTGACAGAAGTTACTTGCACGTGTTGCCATGTAGGCTGCAAAGGAGGTAGCCGCTAAAACAGCTGCACCGCAGCATCTTGGGAGGGAAACCTGAGGACCCAGAGATTCTCACTGAGTGAAGAGGACATGGAAAATCTGTCCCCTCAGTTCTCTCCTGGCGCCTAGAGACAAGCGGGAAGGAAGCAAGTTTTGAGGTGCCAGCTTTAAA
s HiC_scaffold_1 106631362 695 - 233722169 aCTCTTGTAGGATGAAATCTTCAGTCCCAGGACTTTCAGTGATGCTGAACTTGGTTGTTGCCTC-ACGTTCTGACTGCAGTTGGAAAGAGTCAAGTTTGCCTGGAACTGGGtc------------------------------------------------cctcctcctgcacagcccAAGCCCAC-ACAAAAGAGTTCTTAAGTCTATGGTCAAAGAAGACCCTATCTGCCTTATGCTCAAGAAGCAGTAGGTGTATGACCTTGCCCTTGTCTTTGGG---TTAAAACTTGAGATATGACAAGAGCATGCTCACAGACCAAAGCACTAGGAGTAAGGAAATCTCtatttctcttgctttctgtttcttggaACAGAGTG--TTCTTGTCCTTTT--------------------------------------CAGCCATGATCTGGATTGTAAAAGTTTTAGAGGGAATGG-GTATGCTTGCCACATGCGCATCTCA-CCAGTAGAAATGAGTGGCCTCAGTCCACTTACTAT-GCTCCAATT-CCTACTTATGTCCTCCAATGAGGTATTGGGGACTTATTGCTCTTGCAATTATATATTGATAGAAATTATTTGCATGTGCTATCAGATAGGCTGTAAAGGAGGTACCTGTTAAAACATCTGGACAGCAGTGTTCTGGGAAGCAAACTTGTACAATTGGAGATT---------TAGAGGAGACATGGAGAGT------TCCCATTTGCCCCCCTGCctctaaagagaa--aggaaaaaagtaattttcaagATGCCACCACTAGA

a score=204495
s chr3            97029820 10728 + 160039680 [encoded data, 12282 characters]
s HiC_scaffold_1 106632724 11588 - 233722169 [encoded data, 12282 characters]

a score=9042
s chr3            97042477 383 + 160039680 GCTATGAcaactcaagttaaaaaaacaatcttattttggctcatgggttcagagatttcagttcatgct----tggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacaga-ggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataacccc
s HiC_scaffold_1 162202451 344 - 233722169 GCTATGATAA---AATGTCTAAACATAA-cgtattttggctcatgg---------tttcagttcatagtcagctggctccattaCTGT-AGTCCTGgggtgaggcagaaacatcacggtGAAAGTGTATAGAAGAtgaaaagctgctcactt---------caaagatt---agaaagcagaaagaaaggaaataagccaGAGCAGAAGTG---CCTGGAGAACAGA-----TATAGTTCTGCA-------GGACATGCACCC---GTGACCTAATCTCTTCAACTAATCCTCAACTCCTAATAGCCCATTCGGCTATGAACTTAACAATGGACTAACCCATTGATAAGATCACCACCCTCAGAATCCAATTATTTTCCAAAAGCCTC

a score=7320
s chr3            97042481 382 + 160039680 TGAca-actcaagttaa--aaaaacaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccacc
s HiC_scaffold_1 201962501 323 - 233722169 TGACATACacaatttaatgaagaaaagtgTTATTTGGGCTCATAATTTCagagggtttagtccatggttggct------------gattC----TAAgtcaaaaaca-------------gcatggtagagGAAAGCAGCTTAGTTCATGAGAGCTAG-GAAGCAGATAATAAAAAGACCAGAGTGAGGAAGGAAC-TGGAGATAGGATATATCGCCCAAAGGGC---------------------------TGCTCCTAGTGACCTGCTTCCTCCAATTAGGTCCCACTTCCTAGCCGCCCATTCAACTATGAACCCATCTGTGgattaaat-tttaatgaagttaGCATCTCGGTAAT---ATAATTACTttaaagccccacc

a score=6554
s chr3            97042481 358 + 160039680 TGAcaa-ctcaagttaaaaaaacaat--cttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatc
s HiC_scaffold_1 224261889 315 - 233722169 TGACAAGcacaatttaaggaagaaatggTTGACTTTGTCtcacattttcaaatgttttagtcCAAGGTTG----------------ATGGGCAGCAGGGCAGGAACAGCAAAGCAGAAGGACATGGAAGAAGCAAGCTGCCCACCTCATTGCAG---------GAGTAAGCAGAGAGGACATGGCAGAGCCAGAGC-------CAGGACCTGGAGACAGAATGCACTC----ATCAAA--------GGCTCACAGCCA--GGGACCTGCTGCCTCCAACTGTGCCTCACCTCCCAACAGCCCATTCTGCTATACCTTCAGGAGTGGACCGGTCCACTGAGGAATTCAGTGCATCCGTGATC

a score=5403
s chr3           97042483 370 + 160039680 AcaactcaagttaaaaaaacaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGG----ACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATG----AGGTTAACACccttgtaatccaagaatctcccaa
s HiC_scaffold_1 25207496 299 - 233722169 ATAacttaag----gaggaaaggtttattttggtctaTAGCTTCAGAG--TTCAGTCCAT------------------CAGA--------------GGAGTAGTGTGGTGGAAGCACATGGTAAAGGTGCTTTACTCAGCCTATGCCTGTCAG-GAAGCCGAGAGGGAGAGCAGGTAAGAG-----------------------CCAGAAACAAAGGCACACCATTTCAG----------GTAGTGAC-------CCTAGGGACCCACCCCTTCCAACCTGGCCTCATTTCTCAATAGCACATTCTGTTATAAATTCATTATTACATTAGTCAGCTGATGAATAAATATATCACTCCCATCATCCAATCATCTCTTAA

a score=6856
s chr3            97042487 377 + 160039680 ctcaagttaaa--aaaacaatcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaata---aga-agTGAGGGAGTGTGCAAATG---------------------------GCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatct----cccaataaccccacca
s HiC_scaffold_1 230441000 375 - 233722169 ctcaatttaaaggaaaataggtttattttggttcactgtTTCAGACGGTTCAga--------ggctc--------------------caaggcaaaaatggcATAAcagaaggacatggcagaggaaaactaCTCAAAGTATGGGAGCAAgaaa-gctgagagagaagggaaatactcagatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaggagagaaa-------gagagagatggag---atCCTACAAAGACTGCCTCATCTTCTGCAACAGAGACTGGACTCTTAATAGCACATTCAGTTATGAATTCATGAACGGATTAATCTGTAAATGAGAATAGAGTCCCCATTATCCAAACACCTAGGGCCCATCATCTCTGCCA

a score=7396
s chr3            97042505 358 + 160039680 tcttattttggctcatgggttcagagatttcagttcatgcttggctttgttgctaccagatctgtgacaaggcaggga-catcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGA---CTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctcccaataaccccacc
s HiC_scaffold_1 181775534 291 - 233722169 TCTTGTTCTGGCTTA--GTTTGAGAGGGTTCAGCCCATGGTAGGCT-----------GGATC-----CAAGGCAAAAAATAGCATACTAGAGGGACATGACAGAGGAAAACTGTTCATCACATGACAGCTggaaa---acagagagaaggga---------------------------ggatccagggaccagaataaatccttccaggccacaccttCAGTGACTT---------------------CTCCAACCTGGCCTTATCTCCTAATAGCACATTTGGCTATGAGTTCACCAGTGAACCAATCCACTGGTGA-GTAAAATCTCCCATGACTGAATCACTTTCCAG-Aattccacc

a score=7695
s chr3            97042507 344 + 160039680 ttattttggctcatgggttcagagatttcagttcatgcttg----gctttgttgctaccagatctgtgacaaggcagggacatcgtgttataaggacatgacagaggaaagctgctcaccttctggtagccagagatggagagagggaagagaaataagaagTGAGGGAGTGTGCAAATGGCATCTAGGGACAAGAGGGACTTTAGTGTCACACTTGAAGTGACTTATACTCAAAGTGACCTATTTCCTCCAACTTGGTCTAAGTTCCTAACAGCACATTCTGCTATGACCTCATAAATGGACTAATCAGTTGATGAGGTTAACACccttgtaatccaagaatctccc
s HiC_scaffold_1 202483038 296 - 233722169 TTTTTTCGACTTACAGTTTCCAACGTATCAGTCCATGGTTGTCTGGCTCTGTTGCTCTTAGGCCTGCACCAAGGCAAAAACACAATGGCAGAAGGA--------AGAGAGCCTAATCTCTTTCtagcagccag-gaagtagagagaaaaggaaag---------------------------agctgGGGGGAAA-------------TTACACTCA---TAAATCACACCACCAGTGAGCTGCTACCTCTAGTTAGACCCTGCTTCCTAGTAGCCCATTCTGCTATGCTTTTATCAGTGGGTTAATCTGTTGGTGAGTGTAGCACTTCTGCAATCCAGGCACCTCTC

a score=46007
s chr3            97043791 2848 + 160039680 TATTTGAATGGCCCTGGTCCAACAAGACCCTATGCAGACTCAGTAAACCAGACTCAGGCTCCCAACAAATGCCCCAGTAGCTTCTTGCTTTTCCTTAATGTATTAACATTGGTGTATTAACATGGTATCACACAACATGTTTTGCTCAAAGTATGCATTTCCCTTCTCTCCATAGGGGAAATAAAGGCAACTACACTAAGCAAAATCAAAGAATCTTTGCTTGCCTGTCCTTCATGTTGAATTCTCAGTGCCTAGATGA--------TGTGACACTTGCAAGCACCCCCCCCCAAATTACATGAATGGATGAAGTG----AAGGATGTTCTAGGTGGCAGAAACAAGAGGTGCTGAGG-CAAAGATGGGAAGAAGTGTGATATATA----TATGTCCAGAGGATTGGGCATCTTAAATGGTGAGCGTGTGAGGCCAACAGTGGGGAAAAGATCGAGTCAGACAGTGCCATGAAGGGTCTCATAGGGCAGATTTGAGTTTGAACTTCAAA-GTGGTAGGAAGCCAGTGAGGCCCACAGCTGAAGCAGCGAGGGAGATTAGCACTGTGCCCACTGGA-TTTACTTATGGCATGAGCAACTTCCTTCAGCCCCCCTCCCCCAACACACTTCCTGTTAAGAAACAGATCATA-TCTAGAAGGCATTTCGTGTGCTCTGTGCCCAGCCAACTCAGTGGCTAATCTACAAATTTATTTGGCCGGGGTTGTCTGGGTCCCTGAGGGACTCAATATAGCTACAAAATTG-----GCTCTGAGCATTTGACTTTAAAACCTGAGCAGCTGGGACATGGGAGCAATTTAAAGTTGTTCTGACCTAGTCTGGAGGTCAG-AGGAAGTCATAAGCGAAAGGTTCTTCATCTTATTTCCTCTGCCT-------------------------------------------------GGGGTCTGCCTTACCCCCACACCTTCCTAGATAACGCCTAGTATTCCCTCCTAATGAGACATCCTTCCTAATACCATGTTTCTGGTTCTCCAAGTATTTCATTTTTCAACTTG-GCATTGCTTCTTCCAGGTGCCACCCCTTGACC-CCAGCAAGGGACCCAGCAGTCAAACCCCTTGATGGACCAGACCAAAGCGTCACAGTGGTTGTCTGGAACTATTTTTA--TACTTCCTTGGGGACTTGTATGGAATGGGTGACAGAGCGAAAAGATCAAGAGAAAATTCTCCAGGGATTTAAGTGTAGGACACTTGTCCCAAACCCTGGAAGAATGTGtcatttattt-ttatttcctttgaatgtctgtcttcttc-tcctgtccctccccttctggtccttccttctcctgccct-tccctcttccggtccttccttgcatttcttttTTCTCTGTTGTAAGACATGTTCTCCTATGGCTTTGTTT---------------------CTCATATCCC-----------------TCACTGTTTCAATGTTATCCGTAGCACTCCATCAGCTGAGT-CCCGCCCCTCCA-CCAGCTTCAGGAGCGAGGGCAGCAGAATGCAGCCTGGACCATTTGTTCAAGCTCAGCTCGGACCCAAAAGAACTTGAA--GGCTGAATAACTCCTACACCTGTGTTCTCCTAACTCATAATTACGTGGTTTCTT---CTCCATTTCCACCTTGCCCTTCTCATGTTCATTTCTTAAAGATTATtttacttttaatttatgtgtgcaagtgaatgcagacgcccacagtgcctgaagaaagcattgggtccccctggagctggtggagttgcgggtggtggtgagtgttgagaaccaaactccagttctctgcaggagctgtacacaatccaactgcgaccatctttgcagccTTCATTGGTATTGTCTCATCTTCTTGGCTTCTGTCCAACTCCACTCCCATCTCTCCCCTTTCTTTCACTCACCT---GTGCCCGATTGGTACACAGTTATGGCTGCCACTGAAGGTGCTCAGCATCGCATACACTGTCCAGAAGAGATGACAGATTATTCAAGCTCTTATCTAATCAGCCATTTTCCTTTTGAGA-AAAATGCTCTACAGTTTCCTGTACTTGGAGGCTGAAGGAGTGGGCCCTTCACCACCT------GAGCGGCAGATGTTCTAATTAAAACCCAGAAGGAAAGCCTCAAGAC----ACAGGTGTATGATATGTAAAGGAGCAGAAATACGTTCCTTTTCATTCCCAGAGTTGGGGACATGAGTGGGAGAAGTCAGAGCCATGGCTGGTCATCGTCAAGGTGTCTGTGGTCAGGGAAGCCAGGGCCATGGAATGCAGCACAAGAACGTCCTATGggggctggaa------agatgacgaccttactcttccataaagaccagagttcaattcccagc-acctacattaggggattcagaacttcctgtaactccagtcccaggggacctggatgcttctggctttcacaggtacctacatatacatggcacgcacgcgagtgtgcgcgcgcgcacacacacacacacacacacacacacacaattaaaacaaaaagaaTGTTCTGTGGGAACCAGAATAGTTGCAAAACATGAAGATTGAAG------TTGTGAAAACTCTATGGTCTTATTTCAAGTTGTTTTATTACTGTAAGAGTCTCCCCCCCCCTCTCTGCCCCTCTCTCTCACCTCTGTGGATTAGAAATAGTTAGGGGTTTC-TACTGTGAGGG---AATTTGTTATCCACAGAAGAACCCTGGAGGTAGAG-----AAGAGTTGGTTCAGAGGCCTC-GGGCCACTGGGCAGCATTTCTGAGATTCTCTGGGCAGCTTCAG-------GCCCACATCAC--CCCACCCACAGGCAGGAAATGGT-----AGAGACAAAGACTGTGAGAGGG------------CTGAAATTT------TCTTTTCCAGAGCACTCCTTCCACATGAGG--CCACCCCATGCCTCGGTGGCTTGTACCAACTTCGTCAGAGACT-GAGAAAAGGCCATTTGGCTTCT
s HiC_scaffold_1 106645431 2594 - 233722169 TATTTCAGTTGCAGAGGTCTAATAAGGTCCCCCTCAAACCCAGTAAACCAGATTTTGGCCCTTGCTGCACACTCTGAGGGCACTGTATACTACCTTAAC------ACAGTGTCTTATTGACgt----------------------------tatgtgttttctttctc-cattaaggGAAATACAG-CAGTTAAACCCAGTAAAG-CAGAGGATCcttgtttgtctttctttcct------cccaCTGTGCACTGGCGAGGATAATGTGTGGAACCTACCAACGACCCAATAAACATAAAGTGAATGAGTGAAGGGGAAAAAGGACAGTATAGTTGGAGGCAACataaaatgccaaaaataaaGAGATAAGAAATTGTAAGATGCAGGAATACATCTGGGGAACTGTGTAGTTTAAATATTGAGTATGTAAGGAAAATAGTGGGGAA--GATAGGATGAGGTAGTACTAGGGAGGGTTTCAAACAGCAGGTTCAAGTCTGAACTTTAAAAGTGGTGGGAAGCCGGTGAAGATTATAGCGAAAGCACTGAGGGAAACTGCCATTGTATTTGGtagaatttattcatttcatggGCAGTTTCCT----CTGCCCCTCCCAAATATACTTCCTGCCAAGAAACTGATAATAATCTACAAAGAATTTTATGTGCTATACACCCAGCAAACC-----ACTCAGTTACAAATTTCTTTGGCTGAAGTTGAGTGG--CCTACAGAGAACCAATAGAGTTAGAAAACTGAGTTAGCAATGAATCTTGTACATTTTTAACTGAGTATCTGGTACATGGTAACAGTTTTAACTTTCCCTGACTTTGCCTGAGGGTCAGCAGGAAATCATAA----AAGATCTTTTACCCTACTTCCTATACTTTCTCGTCCCTGTGTTCCTCCACCTATCATatcctttcctttcattcttgAAAATCTGCCTTAGCCCTACACCTCCTAAATTAATTTCTATTGTTCCCTCCCCATGAGAAATCTTTCCTACTACTGTCTTTCTGGTTTCCAAGATGTTCCTTTTCTGAACTTGTGCTTTGCTTCCTCTAGGTGGGATTCATTGACCACAAGCGAGGGACCCAGCAGGCAAGACTCTTGGCAGACCAGACCAAAGTGTCAC-TTTTTTGTCTGGAACTACTTTTATGTACTTCCTTGGGGACTTGCAAGAAATGAATGACATAGTGAGAAGATGAAGGGAAATGTCTTCAGTGA-TTGAGTGTGGAAAACTTGTCCCAAACCTTGGAAGAATATAacgtttatttcttttttgcttccaaTTTCTACTTCCATCTTCCTATTTCTACTGTActgtgctttctctctctctctctctctctctctctctctctctctctctctccttctaccCT---------CATCCTTCTCTACCACTTTCTTTGCTAGTAATGGCTGCCTTTTATTCAGATCCTGTAGGGTTAGCCCTGTGTCACTGCTTC-TTATTTCTCACAGCACTGTATAAGCTAAATAATCACAACTCTATCCAGCTTTCAGATGAGgcaaataaaaacacagattGAACAATTTATACAAGCTCGGTAGACAGTAGCAGGGATTTGAACTTGTTATCTAACTCCGGTACCCATCTTCTTTAA----ATCACTGCATGGTTTCTTTCGCCCCATCTCAAC------------------------------------TGCTTT--------------------------------------------------------------------------------------------GTGTTG---------TTCCCATGTTCT--------------------------GATCCTCTTCTCTCCCTATATGG--------------cctaggtttcttt----------------------tctttctcttagacACTTAACATAGTTGGTCACTATATGTCTGTGGCTCAATCCGAAAGTGCTGAGCAAAGCATATAATACCCAGAAGAGATGACAGACCGTTCAAATTCTTAT---------CATTTTCC--TTGAGATCAAATGATCCACAATTTTTCACATTTGGAGGCTACAGGTG-GGAATTCTCATCACTTTTAGTAAAGGAGAAGAAATT-TAATAACAAACTAG-AGAAAAGCCTCAAGTCTTGGATGGGTCTTTGATATG-AAAGAAGCAGAGACAAAACATTTTCAGCTTCC-----------------TCAGAGAATTC-------------TTCATTCCCAAGGACTCTG-------------------CATGCTCTCAAATACGGGGAC-----CTGGAGACTGGAAAAGGTTAGGTGAGGAGGCTGTCCTCTGTCAAATAGTTAATTTAGGAGCCTAGCAAACTGGACTGTGAAAGGCAGCACCTC---TAAC--------------------------CTTTCTTTCCCTATTA----------------------------------------------------------GCATATGCAGAGTTCCAATAAGAACAAGGGCATGTTGGAGGCAT----------ACATATGGAGGTCAAAGCCTGAACTGGACAATTTTTAT-GTCCCATCCAAATATGATGTTTTATACTTATGGTTGTCACTCTCCTTTCTGTCATCCTTTT-----------GATTAGGATTGGTTAGAGATTTTAAACCATAAAGATCCATATTGCTCATCAAGTAAGAATTCTGGAGGTAGAAGTCTCAAGAGTTGATTCAGAGGCCTCAGAGGAACTGGTCAGCATTTCTGAGATTTTCTGGGCAGCGTCAGACACCTTGCCTTCTTCCTTGCCTGTCCTCAGGCAGGAAGCCGTGGGAAAGGGAGGAGAACTATGAGTGAGGCTCCCTGCTTACTGGGAGATGGGAAATCTTTTCTAGACCACTtcttaaaatttagattttttcccATACCTCACTGACCCAAACTAAGTGCATTAGAGACTGGAGAAAGTGCTATCTAACCTTT

a score=111818
s chr3            97050487 3369 + 160039680 TTAAAGAACACATT----TGGTGTGGATCAGTGGCCCAGAGCATGATGGGACCTTCTAAACCTCTTGAAGCATCCCTCCTGAAACGTCCCTGTGTTTCTGCTCTGTTTGCAGAAGGCTCGGCCTCGGTCTCCTACTCTTGGCAAGATGGGTGACTGGAGCTTCCTGGGGGAGTTCCTGGAGGAGGTCCACAAGCACTCCACAGTCATCGGCAAGGTCTGGCTCACTGTCCTGTTCATTTTCCGCATGCTGGTCCTGGGCACCGCTGCTGAGTCCTCCTGGGGAGATGAGCAGGCCGACTTCCGGTGCGATACCATTCAGCCTGGTTGCCAAAATGTCTGCTATGACCAAGCCTTCCCCATCTCCCACATTCGTTATTGGGTACTGCAGATCATCTTTGTGTCCACGCCTTCTCTAGTGTACATGGGCCATGCCATGCACACTGTGCGCATGCAGGAAAAGCAGAAATTGCGGGATGCTGAGAAAGCTAAAGAGGCCCACCGCACTGG---TGCCTATGAGTACCCAGTAGCCGAAAAGGCCGAGCTGTCCTGCTGGAAAGAAGTAGATGGGAAGATTGTCCTCCAGGGCACCCTACTCAACACCTATGTCTGCACCATTCTGATCCGCACCACCATGGAGGTGGCCTTCATCGTAGGCCAGTACCTCCTCTATGGGATCTTCCTGGATACCCTGCATGTCTGCCGCAGGAGTCCCTGTCCCCACCCAGTCAACTGTTATGTTTCGAGGCCCACGGAGAAGAATGTCTTCATTGTCTTTATGATGGCTGTGGCTGGACTGTCTCTGTTTCTCAGCCTGGCTGAACTCTACCACCTGGGCTGGAAGAAGATCCGACAGCGCTTTGGCAAGTCACGGCAGGGTGTGGACAAGCACCAGCTGCCTGGCCCTCCCACCAGCCTCGTCCAGAGCCTCACTCCTCCCCCTGACTTCAATCAGTGCCTAAAGAACAGCTCCGGAGAGAAATTCTTCAGCGACTTCAGTAATAACATGGGCTCCCGGAAGAATCCAGACGCTCTGGCCACTGGGGAAGTGCCAAACCAGGAGCAGATTCCAGGGGAAGGCTTCATCCACATGCACTATAGCCAGAAGCCAGA-GTACGCCAGTGGAGCCTCTGCGGGCCACCGCCTTCCTCAGGGCTACCATAGTGACAAACGGCGCCTTAGTAAGGCCAGCAGCAAAGCAAGGTCAGATGACCTGTCAGTGTGATCCTCCTTTTAGGGAGGGCCAGGCCCAGGAGGGATCTAAGGAGTGTGAGGCAGGAAAGAAACAGTCTCTCTCGTGATGGTATACTCTC---CTCAGCACTACTTTGCTCTGTCTGTCCTGGGTCTGGGTGGCATTCATTGGCATTCATTGCTCGTT-ATCCTCAAAATTACAGTTCTGAGTCTT-----------CTCAATGACT-------GGGCTACTCCTCAAGTCTCATTCCCTCCTACTCA------TCTACCAGTATTCACAGTGAAGCCATAGTGGAGGCAGGATCAGGAACCGTGGCAAAATCTGGTCTGGGGAGGACAG--------GTTCAACACCAGCAACATACCAGATAGACCCCCCACCCACCCCAAGTCTTCTCTTTGGTACTATGCCCAT-CCTCttgttttgttttgttttgttttTTCTTAAGAGCCCAAGGTT----------GAGAGTATTCATCAAGTAATCTGCCCTGTATCATT----CCTTTGAATCAGTTGTTTCC----ATGTGCCATACCTCGGAGTGCTGGTGAGGTAACTGTGGGCTGCCCTTGGCTGCATCTCCTTCCTCCCAGTCTTAAAGGGGTATCCTTGGTCCTTGGCCAGCATCAGATTTACAAGTGCCTTGGTATGTACCTTTGGCAAATGTTTCATGTTGATGATGTCTCAGCCT----TACTGCCAGGCTAGACACCCAGCTCGTAAGGGTGCCAAGACCTCCAGA-AGTCACTGTGCACACAAGCATCGCTGGA----ATTGCCACCAGCTGTCATCCTGCG-----------GTCCTTTATAGTTTAACCTAATGACAGAAACCATC--------------CTGGCCGGCTCACCCACCGTTCCTCTAAAA---TCTTTGTTAACAGGAATGTCCA--AAGTCACCATCCTCTCTTGGATCCTG----GCCAGATTACCAGCCACCAAGTTCAGTGGAATTTCCCCAGGATTTACTGAAACAAAGAGAGCATTGTGCTTCTCGGGTTCTTCTGGGTCTGGGGATGGGGGTGGAGGGGGAAATTCTGCTGTGAAGATGAAAAGGTGGGGGGAGGACACTGAAAAACTATTTTCCCTTCTGTGTATGCCTTCCACTGTCTGCCAGCTTTT--AATGCCGAGAGGTG---TGGTGATAGCAATTGAGG-CCCAAGATCTCTCTTAGAGGCATCAAGGAGACATGGAAGCAGAAAGGGTCCAGTTGGTTTGGACCCT-TATTTAGTG--CAGATATTCCTATGTTTTCTTGGTACCCCTA--GGTACAAC--AGGGGAGGACTGTAGAAAATCCCTGCCTTCCTCAGGGTCTATCCTGGG-GTATCTACTGAGTGGATCCATCT---------------------------TATGCAGATGGAAGAAGCTCAGCACCAGATACCGAGATTTACAAACACAATACtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgCATGCCCATCCATCTCTGTGTGCCTCTGTGTGTGTGTGCTCGTGTGTGCATGCAGATAGAATGGTGAAGAAGAGCCCTGAAGAACGATAAGGAAACATGTAGAGAAACTTGGGTCTTTCTGCTTCCTTCTCAGTTGTCTGGCAGGAGGGCTGAGCTTGCT--TCTTA-----ATCAGCCTAAA-GATCAGGCATGAGAAGT------TCAGGAGGGTGAAGGGTCAGAGG--TCAGTCCCTGTCCCAGTGACCCATCTCTGGGTCCCTCTGCTGGCATTTGGTTGCTACTAATGGATAGAAAGAAATTGACT---GAGGATACCTGGGAAAGGAAGACGGGCTG---TTCCA-----------------GTCCCAGTGCATTTCATCCATT-----CCCGACACTGGCACTAAGACTCTCTGTTCT---GGCTATGGAGTGTGTGTTTGTTTTCTGAAATGGGATTTTTTTGAATTAGAAAATCTGAGACCAGTCGTTGATGGTGAGGttttttttgttttctgtttttttttttttttttttttCAGAAGAGAAAGAGGAAATACTATGTTTGACTGGTTTTAAATAAAATCTATCTCTACATGCCAACTCTGGTTTGTGTCTCCTTCAGGCTGTGGCT-TAAGAGG---GTGGCAGACTTGATGGGGGAAGGGAGAGCATGGAGTCAGACACACAAGGGTTAAAATCCCTGCTGCTGGCCTCCTCCTGGCCAGCAGTGAGCTACTTCACATCTGAAGTTTTG-TTACTCACCTGTCAATC-CATCTAGGGATGCCTGCTCCGTTAGGCTGTGAGGTGAGAGGCTGCATAGGAAGA
s HiC_scaffold_1 106649333 3283 - 233722169 tttaaaaaaacatcccAATGGTATGGATTAATG-CCCAAGGCACAATGGGACCTTTCAGACCTTTGGA------------GaaactcttctttctctctcccctatTTGCAGAAAGCTTGGTGTTAGTTCCCTGGTTGTGCCAAGATGAGTGACTGGAGCTTTCTGGGAGCGTTCCTGGAGGAAGTACACAAGCACTCCACCGTCATTGGCAAGGTCTGGCTCACTATACTGTTCATATTTCGCATGCTAGTGTTGGGCACTGCCGCCGAGTCTTCCTGGGGTGATGAGCAGGCTGATTTTCAGTGCGATACCATGCAGCCCGGTTGCGAGAATGTCTGCTACGATCAAGCCTTCCCCATTTCCCACATTCGCTATTGGGTGCTGCAGATCATATTCGTTTCCACACCATCTCTGGTGTACATGGGCCACGCCATGCACACTGTGCGCATGCAGGAGAAGCGGAAACTACGGGAAGCTGAGAGAGCCAAAGAGATCCACCGTCCTGGGTCTCCATATGAATTCCAGGTGGCTGAGAAACCAGAGCTATCCTGCTGGGAGGAAATGAATGGAAAGGTTGTCCTCCAGGGCAATCTCCTGAATACTTATGTCTGCACCATCTTGATCCGCACTGCCATGGAGGTGGCTTTCATTGTGGGCCAGTACTTCCTCTATGGAATCTTCCTGAACACCTTGCACGTCTGCCGCAGAAGTCCTTGCCCCCACCCCGTCAACTGTTATGTATCCCGGCCTACAGAGAAGAATGTCTTCATTGTCTTTATGCTAGCTGTGGCCGGACTGTCCCTCTTTCTCAGCCTGGCTGAACTCTTTCACCTGGGTTG---GAGGATCAGACAGCGATTTGTCAAGTCGAGGCAAGGCACAGCTGAACGACAACTTCTTGGACCATCTACAGGTATAGTCCAGAACTGCACACCTCCCCCAGACTTCACTCAGTGCCTAGGGACTGGCCCTGGGGGAAAGTTTTTTAGTCCCTTCAGTAACAATACAGTCTCCCAGCAGAACACAGACAACCTGGCCACTGAGCAAGTGCGAGGCCAAGAGCGCATTCCTGGGGAGGATTTCATCCATATCCATTATGGTGAGAAGCCTGATGTGC-CCAGTGGGGTCTCATCAGGTCACCGCCTTCCCCATGGCTACTATAGTGAAAAGCGCCGTCTTAGCAAGACCAGCAGCAGGGCCAGGTCAGATGACCTATCAGTATGAACCTCCAAAGTGGGAGAACCAGGGCCAAGTGGGAAGAAAGGAGGCTCAGAGAGAGAAGATA----ATTCCTTCTGACTCTGTGCTCCCATTCTCATCactgcttttctccttttgggCTG----TGAGTCTCATT--------TGCATTGCTCATTAATTATAGAAAGTATAACCAGGATGCTTGAGAGTTTAGCCATAATGGCTACCCAGCAGGCTGTTGTCCACTCCTCATCTCAGTATACTTAGTGTAGTCTTTCAGATCATGCATTGAA--CACAgtaggggaagggaagggaactgTGGCAAAATCAGGCTGGAAAAGGGTAGCCATAAGCATAGAATACCAGCAGCATATCTGATA-ATTTCTCAAGTACCTGTGGTTTTCTTGACCTCATCACACCCCCACCTCAAG-----------------------GAAGAACTCAAAATTCTCAGCAGTAGAGAGCACCaatcaaataattta------attatttgtgCTCTTGAATCTATTGTTTTCTCCGTTGGGATATATCTTGGAGTGGTGGTGAGGTGGCCTATGGCTGCCATTGGCTACCCTTCCCTCTACCCAGTCTTGAAAGGGGATCCTTGGAACTTGACCAGCCTCAATTTTACAAGTGCTTTGGCATGTGTCTCAGGCAAAGGCTCCACCTTGGTGATGCTGCAGTCTTTTCTTCTGCCAGAATATATATCCTCTCTGTGAGGGTACCGGCTCCTTCAAAGAGTCACTGTTTACACAAACTGCATTGGAATTCATTGCCACCACCTCTCATGCTGTGCCTCCTGAACTGTGTCTTACAGTTCAGCCCAATGATAGAAGCCATCCTTATACTTCTTCTCTTGACTGTTCATCCTCTGTTCATCTGAAGACCACTTTATTAACGGGAATATCCAGGAAGTCCCTATCCCCTTGCAGATCCTGAATAGATAGATCACTAACCACTGAGAGCAGTAGAATTTTCTTGGGACTTACT---ATGAAAAGAACATTGC------------------------------------------CAGATTCCCCTTTGAGGAAAAA-------------gacactggaaaaatattttctcc------tatttctcttaTTGATTGCCAACTTTTAGAATATCAAGAGGAGGCATGATGACAGCTATGGAGGTCCCCAGATCT----------CAGCAAG--AACATGGAAGCAGTAGGGGACT--CTTATCAAGATCCTACATAGAGTGCACAGAAACTGCTATATCTCCCTGATCCCCTTAATGAGACTGCCAAGTAGAGGA-TGCAGAAAAGCTCTTCCTTCCCCATGGACTGGCTAAGGTGTCTCTACTGAGGTGATTGATCTATAATGGGATGGAAGGCTGCCATTGTGAATGCAGGCTAAGGATGCTAAGAATTGGATATTGAGAAT----ATCAGGACATTACATttaaaag---atgtgtgtgtgtgtgtgtgtgtttccatg---------------------------------------------------------------aGGGGAAGAGGAGTccctaaagaagaaaaagaagc-tttAGAGAA---------TCTATGTCTTCT----GGTTGCCTGGAAGAAGACCCAAGCCTCATTGTCTTAGCATTATTAGCCTGAACAAACAGGCATGAGAAGTTGGGACTGAGGAAGGTAAGGGTTCAGAAGACTCAGATCCTCTCTGACCTGCCCCTTTCTGGACCACTCTGCAGCTATTTGGATGGTACTGGTGGATCGAAAGAAG--GACTTGAGAGAAGAGATGGGGAAAAAGAACTGGGTGAGATACCATTTAGAAAAGAATGATCATTCCAGTTCCCTGGAGACATTTGCTATCTGGAACTGGCA-TATGATTCTCTCCtctttcatctctaaaatgta-------tttttgaaataat-tgtttTTGAATTCAGATTTCTATG---AGTCTTTGATGGTAAGG--------------------------------TTttcaggaaggaaaaaatgaaatgatatgtGTAGTCTGTCTT-AATAAAATCTGTCT---CAT-TTATCTCTG--TTGTGTGATTTTCATACTGTGACTATAAGAGAAGCATGACAGATGTGATGGGGGAGTGTTGAGCTTGGAATCAAACATACAGGTGCTAACATTTTTGATGTTGATTTATATCT-----TCAGCAAGCTACTTCATAACTGggactttgttttctcatctgtaatttGGGCCTAGTAGAATCTAGCTCATAGAATTGTTAAATGAGAGATTGCTTATAAAGA

a score=17661
s chr3            97062855 960 + 160039680 AGCTTTTTGCCTGGAGTGGTTTCTGGCAGTGGAAAGTGGCCAAGGTCAT--GGTGGCTTTTCTCTCCCCTCT--GGCTCTGGCAGGAGGGCTAAGAGTGTGGAGGTGTTGAGCTCAGGACGGCCAGGGCACTTGAGC-GGTGAGAGAGAGAGAAAGGTGCCCTCTGACAGCTG-GTCTGGGACCTGTCAGGGTGTAGAGAGAATGGCTCTGTGTGGCAGCTAAGCTTTCAAAGGGAAACACCTCTGGCTTTTCAAACACGGCCTC-TTCTGTTTCCTCTCCCTGGCACCTACTTAGACCCTGCCAATCTGTCCCTCTTGCTTCCAACACTCTCCATCCACGCGCCAGCTTTCCTTTCCCACCCAGCTGGGCAGCTGAGGTA--------------AATACCTGTGACTCACCAAGTGAACCCTGGAAAGTC----AGCACACCTGACATTTC-TTACTGTCACCCTCTCTCTCTCACCCAGGGGCCATCGGCTTCTGGAACTGGGAGGGACTAC-AGCAATAAAAATGAAACTCTTATTTTCCAGAAAA-------------GAGCAAACCTTTTGGAACTCTGGTGCTGAGCAGTCATCTGATGCTGAGAAGTCCACTGACTTCTGGGAGCACTGCCTTGTGGTTGTCCAGCTTCTGAGCATTTCTACCCACCAACGTAGCAGGGTACTTAGGCTTAG---TTGTCCTGGCTTCACAGCAGCAG--GGTGCTTAGGCTTAGTTGTCCTGGCTTCACAGCAGCAGGGTG----CTTAGGCTTAGTTGTCCTGGCTTCAT------AGCAGCAGAGTGCTTACTTA---------GGCTTAGTTGTCCTGGCTTCACATCAGCAGGGTGCTTAGGTT-TAGTTGTC----------------CTGGTTTCACAGCAGCAGGGTGCTTAGGCTTGGTTGTCTTGACTTCGCAGACTTGGTGGCAGAGTCCAACTTTGGT-CTTTATGTGACTTCTTAGAGTTCTTGTCTCTTTGTTTGGAAGACAGAGGAGCAGTATCTAACTC
s HiC_scaffold_1 106660204 981 - 233722169 AGCCCTTTGCCAAAATGGTATTCTGGAACTGGAAGGCAGCCTAGGAAAGCAGGTGGCCTTTCTCACCCATGTTGGGCTCCGGCAAGACAGCTGAGTGGATGGAAGTGCTGGGTTCAGGACAGCGTGGGCACTTCAGCTAGTTTGGGAGAGTAAAATCTGCTCTCAGACGGCTGCGGCTGGGAACTGTCAGGGTACAGATTGAGCTGCTGTGTGTGGCAGCTTAGTTTTCAAAGGGAAACA-CTCAGGCTTTTCAAATATAcactctttctgcttctttttcttggcACCTACTTAGATCTTG-----CTGT------------------------TCCAAGCCCAAG---TTCCTTCTCA-CCAGCAGAGCA-CTGGGTCATGGGTTATACGTGCAAGACTTGT--CTTCCCCAGTAAACCCTGGAATGTCAGAGAGTACATCTGACGTTTCTTTTTTGTTGCCCTCTCCCCATAGCACATGAGCCACTGA-TTTTAGAACTAAGAAAGAATGCTAGCAATAAAACTT-AACTCTTGCTTTCTGGGGAACTTAGCTCTGCAGAAGCAAGATTTCTAGAACCTCAGGGCTGAGTAGGCTTCCAC--CTTAACTTCTCAGTTGCTTCCCTGATCTCTGT------ACTGcctgacttctt----tttttattttaaaaagtaaaacagaaaaaaaggataggaatgatacagaattttaaaaaacagtaagaaattaacactagttaatatatt---------gcatgttgttatcttagaaatagttgttcagataacatgatctaggcacaaaaatcatcagtcaaacaatgacagcacaaacatCTTTTTGTTGAACGAACAGAG-GTTGATATTATagttatctgcttttttttttttactactggCAAAGCAGCAAAGTAATTAtgtttagttgatctgttttCACAGATCTAAGGTCAAAATCCAGCTTTGCTACTTTTAGTAACCTCTTTGAACTCCTATTTCCTTGTCTGTAACATGGCAAAATAATATCCTGCTC

a score=29926
s chr3            97068927 2234 + 160039680 ACAACTGAAATTTTAATAGGCCAT---------GATAAAATTTCCATCTTAACTTTCATCA-----------------------CTTCCAACTCCACCATA-TCCCATATTTATTTATTGCCCCCCTCAAC-----CTGTCACTT-ATTAACGGAGCAATGCACC-CTTATCATCTCGGAAATACTT-----CGGGGAACAGCTAT----GTTAtgtgtc---tcctcgttagta---tataaactctactgtgtcgaaggctttggaattcttattactatattcctgagatcagtataagcactgacatcagtgtttagcaaataataacttaaggcaataaataagtactcaccgaacgaatgaTAGACACCAAAAAACATT-TGGTTTGTGGATGAGG----AAAAACAAGGCTCTG----GCATTGCCTCTGACAGACATTCTGACACAGGTG-GTCTCATGTCATTACTCTTACAGGTTGGCACATTGGAAAACTGAATGGTCATGATTCGAGCCTTGGGTCAGGAGAGGAGGAGGTCACATAGTGTAGTTTGAGTGAC--GAGGTGGAGCTGACTGACTGAATACACTTGGGGTGAGGCAGCCC-CAGCA-ACCAATGAGATCAGTTGTAAGATGCAGCTCTCTA-GACTGATGCTACCCCCTCTGTACTCATAGGCACCCCTTTGCATTCATGGGCACCCCCCCCCTCTGCACTCATGGGCACCCCATCTGAACTCATGGGCACCTCCTCTATACTCATAGGCACCCCCTCTGTACTCATGGGCATGCTT-TCTTTCAGTCTGGCATGAGGGAGACT----GTCTC---AGAGATGAGGAGAGGTTGGGAGCGTAGCAGTTTTGGGTGTTTTCCTCTCATGAGGCAAACTC------CTACTCCGGCTTTGGCCTACAGCCTCTTTCCATCTGTGCCAAGGATAGAGC-AGGCTTGGCTGTATCTAAA----GCCAAAAATAAACCCTGGCGCCAACATTGTCTGTGAGGAGCAGGTG---TCTTGGAAGACTGTTCGACTTCTGAGAGCAACGAATCTTCTATTAGACCTTT-TCAAGAGAGGGTTGGGCCCAGGTGGTAGCCGGGAAGGTTGCTTTCCTGTCGTGGGTCCTTGAAGTCATCCCAGCCGAAC----CATCCTCACCCTCAA-------ACACGGCACATCCCTATCATGGCTTTCCTGGGTTTCTTCACCATCTCCTGCCCAGTAAAGATTCCCAGGACCACCACCTTTTGACTCAAGGATTCCAAAGTTTTTCAAAATATATAACACAGAGCAACTGCTGTACCTGGGAACAGGCAGTGGG---ATTTTGAGGCCCTAGGG-CAAGGTTCCTATTTCTAT-TGCTTAAGCCCCTGCCACTGTGCCTCCGTGCTCCTGTAGGTGCCTGTCTA-GAAACAAATAGATGGA--AAACTCCTTCTACCTCTTTTGTTCATTTTTCAATCAAAAGGAAGTTGGTGTGGGTGACTGTGTTCA-----------------------------------------------------------------------------------------------------CAGCCCTC--------TTTTGCAGCATCGAAATTGTTCAAATGTATTCTCCCATAAACTCATATATAGAGCCCCTGAAGCCAAGCAGAAATGGTTGAATTA-GAGGCAGAGAGGAGTATGTGGATGAGCCTCACCCACTCTGTTTCATCTTGGTCTCTCCCCTGGGAGCCTGCATGAGTTATAA--CAATCTGTCATGGCTT-----GGAGCGGTGTGAGGCCCACAGAGCCCTGGCAGGATGAAACA--------------------------------------------------------TTATTGAACTT-------AAGAGGGGGAGGCCAAGGTGAGCATCCAAGCCTG-----------------------------------CGTTTACCTACATATGAGTGGCTGAGTGACCGAGTGGCTGAGGTT--------------------------TATATCAGATCACCTCAGCTGAG---------------------GACCTTCAGGACCATAAACTAAGGCAAAGCTGGAGACCGTGAGCAGTTTGACTTGGCCTAAAAAAAAGACCTAAATATTTTCATTGTGAGAGTCTGTTGTTGACTGCAGTAGGGAGAACCATAAAGGAGGAAG-----ATAATGGATCCTTGAAAGACAGTCTAGGAAGCTTGGGCATGATCCAACAGGCCACAGGGAGCCACTGAAA---------------------TGCTTGCAAGAGCAGCCCAAAG------CGTCTCTGCTAACAGAGAATCTGCTCTAAAGAGTTGCGTGTCTGAACTGTTAAAACCTTTAGCAGGCACTCCAT---------------GCTGTGTCCTGC--------AGGCTGCCTGTACATTCTGCCTAGTGCTTT-CGCACCCATC----------------TCTCACCATCCAGGATGAGTCCATCCACCAGCCTGATATCCCTGTGAGCCTCCTGAAACACAAACCTGGCGTGCCGTGGCACCTTCTCCTCCAACTCCCTCACTGGAT-TTTCATGGAATATACTCAACACTCCT
s HiC_scaffold_1 106682899 2537 - 233722169 ataaatgaaatcccAATATATCACTGTTGTACAAACATATTTTGCATCCTACTGTCCATCATTTTAGATTTCAAGTGTTCAATTCTTCCAACTTCACCATggtttcatatttctttattgttCCTATCAACTCTAGCTTCTGCTTCATTAATAGA-TAACATATCTCATATTATCTC---AATGTTTACCTGTGAGGAACTACTGTTGTCATTATATGTTGCTTCCTCCCTAATGCAGTATAAATTCCACTGTGGGAAAGATTTCCTCTTGCTCAGTACACTGTCCCACAGTTTAG-------------ACCAGTGCCTCGTACATAGTAATTTAATGTACTAAATAAATATCTACTGAATGAATGATGGA----ATAGAGTAGTGCTATTCTTGAAAgatgttttagaaaatatgttcTTCATTTCACAGCCTTCAGTGTATCTTAAATCCCAGTAGTGTTTCA----ACAATGCTTGTAAGT-GGCATTTTGGAAAACTGCCTGCTCAGTGCATG---CTTAACTCTCAATTAAATGTTTCAACATGGTGTGTTCCTAG-GACTAGAAGTAGAAGTTAC--AATGAG-------GAGATGAGGTAAATCACAGCTTGCCAACTAGATGTGGT-TAAATTGGGGTGCTCTACTACTGA-------CAATCagtaaagacaaaaaacaatGTAAGTT----GTCACCACCCC------------------------------------------------TGCAAAAAAGCAGCC---------------GCACGCCTCTTTTTTGGCCAAGCAGGAGAAAGGCTTCCGGTCTTTGTAGAGATTTGTCAGAGAAGGGAACATGGCAGTTCTAGCTGTTTCCATCTGATAAGGAAAACTCTAAGGACTGATTCTGCTTCGGT-TATTGCCTTTTTAAATCATTGCCGAGGGTAGAGTTGGGGTAGGTGGCAGCGAAACTTGGCTAAAAATAAATCCTGAAACAGACATTGTGTGTCAGGAACAGGTGCTGTAGTGGAGTACAGTTTGACTTCTGAAAACAAGCAGTACCATATAGGACCTTTGTAAAGTGAGACTGAGCCCCTGGTAGCAGCCATAAAGGTTATTTCTTTGTCACAGACCCTGAAAGGAAGGCTATCCAAACTTTTCATCCTAATTCCTAACATCACCATATAATACAGCTCCATTATAAATGTACTGGGTTGCTTGACCACTTCTTGCCTAATATAGATTCAGAAAACCACCCCCTTCTGACTCAAGGATTACAgagtttctcaaaataaattgCATCCAACAACTGTTATACCCAGAAACAGACAGAGTGGAAATTCCAAGACCCCGGGGATGAGGTTCCTATTCCTTCATGCTTAAGCCCC--------TGTTTCTATGCTCCTGTAGACACCTGACCAGGAAGCAAATGGAAAGAGCAAA-----TCTAAATCTGTTCTCCACTTTGC-ATGAAAAATAAGTTGGTCTAGGTTAGTATATtcaacaccttttttttttttctcactattttcttttcagtactgggaaccGAACTCAGGGTCTCCcgcttgtcaggcagatgctgcactgctgagctacatcatcGGTCCTCAAAACCTTTTTCGTAGCAGGGAAACACTTCAAATATGATTTTCTATAAGTGCATATATAGAACTGGCCAAATTGGGTAGTCCTGACTGAATTGTAAAGCAGAAAAAAGTATGTGGCTGAACCTCACCCACTTT-TTCTAGCTTGGCCTCGCTCCTGTGTGCCTAGGTGGGCAAGAATCTCTTCTTTTATATCTCAGTGAAGAGCAATGTGAGCCCCAGAGAGCCC-AGTAGGATGAGACACACTAAACAGAATGAGGACTTGGAACTAAATTGCACATCGGTCTTGTCTccccattttatataatttttaaaccaaGGGGACAGTGTCAAAGTAGTCATTCAAGTATAGACAGTCAAGTCAAGTCAAAtcaagtctgtctgtctgtttctctctctttctccatctctttccccttgtctctgtctttccttctttctctctctagggAGGAGACATGTCAAGTTGTCTCAGCTGAGAGGTAAGAACAAAAGGGAAGAGGCATTCAGAGCCAGGAATCCAGGCAGGGCCAGAAACCTTGAGCACTTCAGACTggttaaaacaacaaaat--gatatttttagtACTAGCATTTGTAGATGA---CAATGGAGA-AGTCATGTATCAGCATGTATCAGTCATGTATCA--GAAAGTCAGTATGGGAAGCCTGGATGTGATACAATAGGCAATAATGAAACACTACAACTTTATGAGCATGGTAATATCTCCTTGAAAGA-CTGCCTAAAGGAATAATATCTGTGCTCACAAAAA--CCAACTTAAAGAGGCACATAACtcgattttaaaaacttttaattggAGATTCATCCTTTCCTTTTGTCATCTCTGCCCTCCTCTATGTGTGGACGCTTGAACCTTTTGCCTAGACCTTTATCCAGCCATCCTCATGGCTTCCTCTTTCCCATCTTTCAACAGGAGTCCATCT-CCACTCTGAAGCCCTTGTGATGTTCCTG-CGCACACACCTGGAGTATCATAGCTCTTCTTCCTTCAGCTTCTTCAGTGGATCCTTTCTAGAATTAAGGCCAAGCTCCT

a score=18319
s chr3            97071948 723 + 160039680 TTTTCTCCCCCTCTTCAGAGCCTTCCCTTTC---TCTGAGCCGATGCGGAAGACCTAC--ATTTTTAAAAAGACAACGCAG-TTCTAATCTCATACCCCTTCCAAAATGCTCTTTGGGACTTCCCAATGAAACTGTCTCCTGAGGCAACACATTTGCATGTGATGTATCTCCTCTGGCGCTTATCTGGCTGCCTACTATACAAGCTATTTATAAACGCCTGCTTCTCCCAGCATGCTGCGTGCTCACAGAAAGCAAACACGGAATTAACAAAATAAGAACTTGATGAATTTCCCACGCTTGTTAGCTGAGTTTATGGAACTTTTTTCTTAAATGATTCTACAAATGTTCAAAAACCACGAACAACTGCCCTGAGGCCAGGGTGTGCTGGTCTCTCTTTCAAGTTC--CACACAATGCCCCCAC-----ACTCTATTAAGGGAGGTCAACACTAGATAAGAAACGCCCCCCAAGACA---------------------CCCCTCCCAGT----------CCAGCGG--CCAGGTTGGCAGTTTGAAGAAAGGCCTGGTGTGTCAACATTAAAACACCAGGACTTTATCCACCATGACCGACACTGCACCCTTTACTGCTG--------CTCTGGCCCTGGTATTGGAGGCT--GAAGCTGCTTAGCCTGTGAAGACTTCGGAGAA--AAAGGCACTTAACCATGGAAGCAA------GTCCA-----AAGAGCAGCTATCCGCAATCACTGATTGAGCAATGCTATA-GCCAGCCTCTGGGCTAAGGACTGTGA
s HiC_scaffold_1 106685554 769 - 233722169 tcctctccttctcttcag--CCTACTTTATCCTATCAGCGCCTTCCCTgaaaactttcttatttttaag-------ccCAGACTGTAATTTCATACCCTTTG-AAAATGCTCTGAAAATCCTCCAACTTGAAA-GTCTCTCAAGGCATCATATTTGTATGCAGTCTATCTGCTCTAGCACTTATCTTTTGGCCTGGTGTc--agttatttataaatgtttgtttctCTTATTATATTTTGTGCTCTTGGAAAGTAAAAACAGAGCCAACAAAATAAATACTTGATGAGCTTCTTGTATTTGCTAGTAGAGTTTGTGAAACCATTTT-TGGAATAGCTCTGTACATATTCAAAAAGTAAGCACAGCCAGACTGAGCCCACAGTATGCTGAT---TTTTTCTAGGCCCACACACAATTTCTCCTCCTTGTACTATGCTAGGTGAGTTCAAC-CTATGTGAGAAATGCCACCCTGAACAGGTCAAACACTGCAATTGGCCGCCAGCCCAGTATTGTGTCTACCAGTGGACCCAGGCTGGCAATTTGGGGAAAAGTATG--GCATCAGTATCAAAATACCAGGA-TTCATCCACCACAG--GGGGTTAGATCCTTTATTCCTATTCTAGATCTCTAGATCTATCATTGGAGGCTCACAGGATGCTTAGTTTGTCAGGACTTTGTAGGAATACAGGCAGTTAGCAATGGAGGAAAAAGATGATTTAAGAGGAAAAGAAGC-ATCTGATGTAATTTATTGAGTATGCTTATGTGCTAATCTCTAAGCCAAAGACTATGA

a score=19160
s chr3            97075901 810 + 160039680 TGTGTGCTACTTGTGAATACCAGGCCT-AGCCAGCCCTGGACACAGCAGT-CAGTGACAGTACCACAAGCCCTCCTCCCTCTCCCACACCTCCTCCCTCAGCTGCTTCTCCAGGAGGCCACGCAACAACGTGGGATCTTTTGCCAGGATGCTCAATGAACAGGAAA----------------GTGGGAGGGGCC-ACAGCAGTTGCCTG-TCACCTTCACCACAGCTGAGGCTGTGCCCCCATCTAGTCGCACTCTGGCAGCAGCTGCCACAGCAACCACACCCTCAGCCCAAGTTCCAAGAGTCAAGTGGCTGTCCCCAGTG--GCCCTGTGT---GTTGACAGAGTTGAAACAGATGGAAAATGACTCAATAGAAAATTGACTGAGTCAGAACCTCAAGACCGTGCCTCTCTCCGGGCCGGCCCGTTCCATTTCTGCGTCTGTGGATTACCAAATCTGGGTTCTAGCTGTGTGTTGGATTCAGGGAAGAATGAAACGAACTTAGGAA--GATAGTATCGTGGCAGTTCTTC----AGGCACTGTGTGTG--------GCAGACAGACAGATAAGCCCAGGAAGTCACAGGTCCATATCACATGGATTCCGGGGT-----------TTCTGCCAAGCTTTGAGTCTTATTAAATATTAAACCACAAAAGCTCATTTTCTC-TGACTGGGGACATCATGATAAAACTCTGTGGCGACAGAAATCTGGAAAG---ACTATTGTTGG---------GACACTTTCACA--TCAAAGCGAAACTACGTGCGGTTACCCTGCCTGACC------GCCCTGTGGCAGCTGCCTTAGGTGG---TGGTGCCACCTACAGATGGGGCTGAGTGTGTCTCAAACAACCTTAT
s HiC_scaffold_1 106687294 841 - 233722169 TGTGTGTTAGCTGTGGGTATGGTGCCTGAGCTAGCTCCAGACATGGCAGTACAGGGGACAAGACACACTTTCTCCCCACCACcccatttcattttcctcatct---cCTCCAAGCAGTCAT-----AATGTGAGATCTTGTGTTAGTCAGCTCAGTGAGTAGGGAAAAGTCAGGCTAGGGAAGTGGATGGTGCCTATGGTAATCTCCTTCTCACCGCAACTACAGTTGAGACTGTGCCCCT-TCCAGTTATACTCTGACAGCAGCTGCTGCAGTAATCACACCCTCAGCTTAGTTTCCAGGAATCAAATGACTGTGCCCAGTAGTGCCCCATGGCAAGAGGATGGATCTGAAACA-CCAAAAAATGGCTCAATAGAAAATTCACTGAGTCAAAAT-----AACTCTGCGGCCCACAGCCCTACCCTCTTCTGCTTCTTTATCTATAGATTATCCAGTCAG----TCACCTGCA----------AGGGAAGGATG---CCAACATGTGCAGTGATAATGTCCTGATGGTTCTTTGGAAAGGATCTCCATGTACATGCTTTGCAAATAG--AGGTGAGCTTA-GAAGTCACAGGTTGATGTTACACAGTTTATGAGGTGATTCCTATGGCTCTTGCAAACTTTAAACCCTGTtaaatat---ac--caaaaattaattttttcttaattggGGACATCGTGATAAAAATCTG-GAAGACAGAAATATGGAAAGGAAAATATTGCTAactaacaaatgaaaattttacatttcagaCTGAAACTAGAT--GGTTTCCTCCCCTGCTCCCACCAACCTCACAACAACTGTCTCACTTGGAAATAGTGCAATCTACAGACAAACTTAAAGGTGTCTAAAGAAACTTAAT

a score=9675
s chr3            97080707 647 + 160039680 TGTGCTACTGTGATTAGCAAACTTGACTTGGAAACTCAGCAAAGACAGAC--ACAAGCCAACCTAGGTGAACATAGCCCCCATTTGGAATGACAGCATCAAAGCAAAGGAAGGTTGATGGTGTTGCACAAGGAACTGAAAGC----------CCTGATGCTGCCTTTGATTGGACACCTGCCTCCAGCCACTTCAACTCGTGAACATAAGGTGGTCATGAGCTTAGAA--CGCTTGCACAG---AAAGTCTTTATTCATG-------CAAACTGTCTCAGCTCAAATA----GGCTGCTCAGGTTTACCATAAAGGGGTAATAGAA-AGCTATAACTGTTTTCAATATGTAGGAAACATCTGGAGTAACCACACATTCACCAGGAATAACAGAACAAAGGCATTCTAAGAAAGCCTTCTTCAAGTTTGTTTTCACTTAAGATTCTGTCACCGTTGTGGTCT----------TGATTAAACAAGGGGAGGAGGCAGGGATATTTATCACTGGTAGGGCAGAGGGGAGGTG---TCAAAGGCCTGCCTCTGGATTGGGGGTGGGGGGGTAGGGAAGACAGACCTGGCccagaggcaaatgaaattaagcatccagtggtgatctctgtatactcgtgtcaa----agcattattggcagtaaccgagat------acaacttaagagtccactgatgggtg
s HiC_scaffold_1 106703367 616 - 233722169 TATGCTATCAAAATTACCAAAAATGACTCAAAAGCTTAGTAAAGACAGATTTCCACTCAACCCCAAGTGAAAGTAACCCCACATCAGAATAATAGCATTAAAGTGAAGGGAGGTTAATTGTACTACACACAGAACTTCAAGCAGATCTCAGGTACCATCCCACCTCTAATT-------TGCCTCAAGTCA--TCAAC-----AATATAAGGAGGCCATATATTTATAAACTCTTTGTGCAGTAAAAGGACATTAGAGATGACCTAGCCAAACCATTCCAGCCTAGATACCTTGGATACTCAGGTTTACCAAGAAAGAGTAATAGAAGAGCCAGAGATACtttcaatatttcaaaatctgaTGGA--AATTGTGCACTTATCaataataaaag---------tttataaaaa----tagtttatgttttattttagttaaaattttg--aattatgtGGTATAAAATTTTGCTGGTTAAA-----------------GGTATTGATca-----ataaaagatggaaaatgacCCCACAATCCCTCTTATAGAT------------ATTA-----------------TCAAAAGCAACTTAAATTGA-CATGTAATACAGATATCTGAAATCTCATGCTCACTGTAGCATTACCCACAATAAGCAAGGTACAGAAACAATTTAAGGGTCCACTGAGTGATG

a score=15153
s chr3            97154904 1020 + 160039680 TTTTTCTTAGTTCCCTTCATACTTAGGTCTTGAATGGAGAGCTCCTCAGAGACGTATCTCAGGCCTCATTACGTCTCCTTATCCTTCTGCACCAAGACT--------GTATCCATACAAACTCTTGCAGTGATGAGCCTTG-----AAAAACCCTGCGTATACACTCCTTGGCTGCTCTTACTCTGATCTCCAGCCTATGTCATCAGTCCAACAGAGGGCATTTCTATACAGATGCCTCACAAGTACACGTATCTACCTCATAAAACACACAATCCAAGTTAACTTGCTAGCCTCGATTTCACCTCTTTCCAAGGTGTATGACATCATCTGAGATCATCTGA-CCACGTACTCCAGGGCTATCCTTGACCCTTCCCCTCTCTCCCTCCTCCCTTGAATTTCCATTGTTAACGGCTTACCAGGTTCCGTACCTGGACTGCAGCCACAGCTATCTGACTTTGCTCTGTTTCTGCTCCCTTTCAATCCACAGTGTCTCACACCATGGAGGAAAAACATCACATTTA-------CATTATATTTAGA------------------TTGCAAATTATGTTCCTCGATTCCAGACCATCAAGGTAAAAAAAAAAAGTCAAAGGAAAGTAATCCTCACATCCCTTGATATTTGTTTTAGTATTAATACCATGCTCAAAATTAAACTTCT---TGGGAGATTCTTGTAGGAAGCAACG-GTGACGTAAGAGTCACCGACCTCTCCACTTCTCCTATGCCATGGTCTATCATCTTTTAAACCGGTCCTTACCAAGTACTCA-CAATGAATCAGACACCATGCTCACCACTGGAAATAAAACAGTGAAtgtgtgtgtatgtgtgtttgtgtttgtatgtgtTAATCTCATGGCTAACACTGAGTTTCAAATAATATTAAGTGAAACTCTCATGAAAATTTACTGGAGGGAAATTTACTTGTTTCTCAAACTAGCCCTATTTTATAGTAAAACCATGGTCAAAAT-------AAGCTTGTCTCAGAGTCCCCTCCTTGCCTGTCCCCAGAGCATGATTTCAA--------GActtcttcttcttcttctt
s HiC_scaffold_1 106852625  973 - 233722169 tttctctttcttttctttatat--------------ggtAGTTTCTCAGGAACCTGTcctagagtt--ttcttttttctttctctattctaCCACGTGTTCTGAGAAACATCCATTTCCACTATTTTAATGATTAACTATGTACCAAAGAGTCCCCCATATGTTTTTCTACCCCAAACTTATTCTGAGCTCCAGACTACATAACCAACTGTCTAAAGGCCATTTCTACCTAGGTGTCACACAAATAC----------CTCTTCATCTATATCTTCAaagttactttcctttttttgcttaa----ttttccCTGACAAATGGCATTGTTAG---TTACCCAATCCAGAAACTTAGGCGACATCTTTGACTC-------ATCTATCCACTCTATTG---------TGTTAACTACCTCCTATGTTTCACACCTGGGTTGTAGCAACAGTTTCCTAACTGACCTTT-------TCCCCTCCTAATCCAGAGTA----ATACAATGGAGGGAAAG-AGCACAGTTATAATGGTCATTAAATTCCAAATACTTCCTATCACTTAGCTGAAAATTGGATGCCAACCTTCCTGGAAATCAAGGCAAAA-------GTGAAGGAAAACttagtttcacatttttaaatat--gatgTAAAGTTAATTCTTTGCTCTAAATCATATTTCCACAGATGAGATTTTTGTAGGAAGCAGTAAGCAATGTAATGGACAATG--CCCTTCACCACACATATCCTATAATTT--CATTT----GACAAGAATTTATGGAGTACTTAATTATGAGTCAGGCACTATGCTCACTACTGGAAATTAAACAGTGAATATGATTATGT-----CTTGT-----------CTAATCTCACA------ATTCAGATTTGGATAGTATCAAGTGTAACTCTC-TGAAGACCATTCGGTGAAAAATGGGATTATTTCTCAAGCTATTCCTGCCTGGTAGTACAATCAGGGTCAAAATACATTGCAAgtgttcttc----ttcctcctttccttgtcTCCAGAGTAC-ATTTCAAACTCTGGGAAGCTCTgcgttttcttttt

a score=25780
s chr3            97158335 1990 + 160039680 AATTTCACAAATAGGAAGCACTCAGCTGATAGATGTTTCAGG-TCTTGACTTTAGTAATCTTGCTTTGGGGACTTCAGGGAATTCTTCCACAT------------TCAAACTACTCCCCTTGCCCA-CCAATCCTAACACTGCCTCCCCTTACCCTCAT--TTCCTCCCTACTCACCCCAGGCAAAGCCTCAAGGGAAAAAAAAAAAAAAACAGACGAAATCCCTTAATTAC--------CCGGGGCTTCTTGGCAGCCTTAAATTGAAGACTGGCGGGACTGGGAGTGGAACGTGGGAGGCGTGGGGGGGGGGGGCGGGACCTTA-AGCAT-----GGCGGGGGGCCGACGGAACTGCCCTCCCTGGGGACCTCGGCCGCGCATAGCATTGTGGAAGTTGTAGTTTTTACGGGTCTGAGTTTCCAGATCGGAC-GAAGTCTCAGGACTCACTTTCCCGTGCTCCTGTGCGCAGACTTAATTGGAGCAGGTCCGTGGGAGGTCAGGAGAT---TGCGTGGGGAGCTTGGTTATAAAATGTGGA------CCCGAA---------TCCCGGGTGTCCGAGG---AACTTCTGCTTTTGCGGCCTCCCCTTCACACGGTTTGAAGTGCAAGTTTCAGGT-----------CCAAGT---AACTG------CCCTGACTGAGCCTGCATGCAGTAGGGGCGGCCGG--CAGACGCTAGGCTTAAACTACTAGACAATCTTTCTGCTCCCACCCCTTTCTCTCCA------CCTCCGGCCTGACTGTCGCTGGGTCGCCCCGCTAGAGTCGCTTGTTCTGAGAGCTTGGATGCACTTGCCCTCCAGTTCCCGCGAACTTCTGAGTAGCTGCTGAGCC--GCGTTGCCTGCGGAGCCCTC--------AGCTTCCACAGC------------CTCCATCATGCGCGTGTGGGTCCCCGTGGGTGTCCTGACCTCGCTGGCTTACTGCTTCCACCAGCGGCGGGTGGCCCTGGCCGAGCAGCGGGCTCCTAATGGCCAGCGTCCGGTGGACCGCAACCTACTGGAGCTGAAAATGGTGCAGGTGGTGTTTCGACACGGGGCACGGAGTCCGCTCAAGCCTCTCCCGCTGGAGGAGCAGGTGAGAGGCGGCCCACAGAGGGGTTCTTGGGGACACACTTTAGCGTCCCCCGTCGGGGCTCGGGCTGGGTCCAGACCAGA----------GGGAAACAACAGTAGACTGGCCCTCAGGCTGTGGCCTGGAGTCATCATCCCATGCTCAT------CCCAAACCACCGGTGTGGTGTGTAAGCCTTCCTGGCTAGGGCAGCCCCTGCCCCCCAAACTTTCAGTTGCTTGGTGTAGTGaaacttttcaaagatgcataagaatgtcccaggcgggggttcttatttaaatgcagattctgattctgcggatgtggagttgggtcACGTTTCGTAGTTCTGTGGTTGAACTTGAGTTCAAGGACCTTGTAAGTGCCTGGTTG--TTAATAACAGAGATCATTGTACCAGGAGAT-ACCTTTAGTGCTTCCGCAGTACAGAGCAAGCTGGCACCTTTGGAAC------------CAGATCTTAA--TACAGATTTTTCTTGTGGGCTTGCCAGAGACCATTTGAGATCTTG--TGAAGTCTTATTGCGGACAAGGACTGTATCTTGGGGTTC--TTTAAGGTCAGGTTTAGAAATC-----TGGAAAGGATTTGTGGTAAGAAGGAGGGAAAGTTAA---TTAACTAATTTTGTGGCTATAA-----------------------GTCAGGATAATTATGATTAAAGCACAAATAATTAGC--TTTTTG----------------------TTTAAAAAATAACCCC-------------------TAAC----------AGTATACAAGAAAAGGGCACCAGAAGTCCCTAACACCCCGG--GTTGAATTTACCC-ATGGAGTCTGTATTTGTTCAGTT---------------GCAA------------------ATACTCTTAATGGTCATTTCTGTTTTCCTGAAGGGCTGTGAGTTATAGTTT---------CAACCCAAGATCTGGTCTTTAAAGAGGGTTACACATGAAAAAGCCAAGCAACCAGGGCAGCTCTCACATAAATAAATATCTTTTAGCAGGTGTTTGTTTACCAGG-----TCTCCAGTTAGCCTGTTCCTATGGCTGTACTACTTTCTGTCTGGCACT
s HiC_scaffold_1 106854311 2086 - 233722169 AGTTTTGCAAGTGATAACCGCTTAG----TAGGTGTCCCTTACTCTTGATTTCAGTAATCCCACTTCCAGGACTTCAAGAAAGTTTTCTACTTGTAAAACTGCAACCAAACTACTTCTCTTCACCATCCAGTTCTA----------TTCTTAACCTTGTGCTTCCCTGTCACCCTCCCTTAGTAAACCTTCACTT--------CTTACAGATTTACAGAACCGCTTCAGCCCAGCCCACGCAGGGAAGTCCTGGGACTCCCTGCCTGGAGATAGACAGGA--------GACAGGAGGCGGGCCTAGCAGGGG--------ACCTTACAGCCTACGAAGGTAGGGGG---------------------GAAACCCCGCCTGCGCGCTGCCTCATGGGAATTGTAGTTCTCACAGTTTCCAGTCTGTGG-TCAGACAGTTACCACGGGACTC-CTTTCCCGTGCTTCTCTGCGCGGTTCCACTTGGA-CTGGTTCTGAGAGGGTGAGGAGGTAGGTGCTTTGGG-----GTTTATAAGAAAGGGAGTTCTGCTCGAGAGATTTCAGTACCGAGAAACTCAGGGCTAGTTCCTGCAATAGTGGGTGCCA--------AATTTGAAACCTAAGTTTAAGATTTCCTAGAGAACCAAAACTAAACTGAGCTTCCCCAGGCCCAGTCTACA--CAGCGGGAGCGGCCAGTTCTGTC-CCGGGTGAAAACTCCCAGGGCGGTTTTGTACCCTCACCTCCGCTTCTTCGGGTCTCTCTCAGGGCTGGTAGTGGCTG---CGGTCTGT-------GCTTGTTCC-AGGGGTTGGCTGTGCTTTCCCTCCAGTTTGCGCGAGCTTGGGAGCGGCCACTGAACCTCGCGGCGCCCACGGAGGGCTGCGACGAGGAGCTACCACCATGATCACCGGCATCTTCGGCATACGCGTGTGGGCCCCGGTGGGCGCCCTGACCTCGCTGGCGTACTTCTTCCACCGGCAGCGAGTAGCTTTGGCGGAGCGGCGGCCAGCCGACGGCCAGCGTCCTATTGACCGCAGCTTGCTGGAGCTGAAAATGGTACAGGTCGTGTTCCGACACGGGGCGCGGAGTCCTCTCAAGGCGCTCCCGCTGAAGGAGCAGGTGAGGGCTGGGCTGAGGCCAGGCTGGTGGGAA-----------------GGATGGGGGTTGGGCCAGGCGCCTGCCCAATCTCCCAATTGCGAGTTTTTTGCTGCGTGG----AAAGGGGTCGGTTTGGGTCCTTGCTCTCTCTTCTTTACTTCCCTCAGCGGCCAGTGCGGGG-----ACCCTCCAAGGTAGAAGGG--------TCCAAAATTTT--GTTTCATCCCATAGCTGGCCTTCTT-AAGGTCCAAAGGAGTCGCCT-----GGAGATATTGGTACAATGTATATTCTAATTCAGCAAATGTCTGGTGGAATCA------GAAATTCAGCATTT------------------CCTGAAAATGTCTGGGTGAACTTGTACAGGACTGCAGTGCGCTTTTGTATGACTTTTGGTGGTTGT------CAGAAT-TGCCAGGACCTTTGAAACGGTGATAACAGACAGATGTCGATTTACAGGGAACAGCTCAGGGTTTGCTAAAAGCCATTTGAGATCTGACCTGACCGCTTTTTGGTAACAAGTGTTGTGTCGTGGTGTGCGTTTGCATTTTAGGATTCTAAACCTGTAATGGAAGGGactttttggaa----aatttaaatttaaaatttaagtaaaaatg-gGCTATGATGTCTTAAAATCTGCCTGCTTTGGCCAGGATAATTTtgattaaagca-aaataattagttgtttttgttttgttttgttttgttttggctttaaaTGATTATCCTGCCGGATTGTGACCTCTTGTAACAGAAGGACTTAGTGAAGAGAAATAGAGAACCACATATCCCTAAGGCCCCAACTGTCACACTTACCTGGCTGTGCTTTTGTATGGTTAGTTTTCCTTGATGTTGGAGCAGGTCAAACAGGTATTAGGTATATTCTTCATTATCATATCTGCTTTTCCAAAACTGTGAGGGTTGTATCTTCACATTGTACAACTGAAAATCCAGTTTTTAAAGTTGGCCACATACGAAA---TCAAACATTTAAGGCTCTTCtttcacaaataaatatatttttgtgggCACTTA-ACGCTAGGACCATTTTTTAGTTAGTC--TTCATATGATTG-AC--CTTTCTagctggaatt

a score=6749
s chr3            97162338 548 + 160039680 aaaaaaaatcatgcctgggtcttcctcctagagattcagatttaattggtacagggtatctgagcattgCAAGAACACTTCTCCTCTGGTGCTTTAGAAGTATCTGGGCACTATAGCACTGAGAAGTGGACAC-CACACCCCATAAAATCCCAGATGCGATTAGCCTGGAATGAGGCTCAGAGTTCGGCAACTTAA-AAATTCCTGTGATG------CCTTATGTACAAGGCCAT--TCATTGCTTGTTTCCTGAGACCTTATCCTGGAAGGTCA----GGAGAtctctctctctctctctctctctctctctctgtgtgtgtgtatgtatgtatgtatgtatgtgtgtgtatacatatatacatatatacatataacatGGGATGTAACCAATCCATCCCACTGTGACGTTGCCTTCCTAGGGTTGTGATATGGTGGGATCTTTGTACTAAATTGAATGAACAGGGACAAACAGTCCCACAGAACCCATTGCTCTGACTACCGGAAACCTGTCCACTTCATTCCACTATC-CCCTTATGATGCCCCGAGGGAGAAAATTTTC
s HiC_scaffold_1 106858755 461 - 233722169 AAAATTACTGACACCTGAATGTTCCTCCCAGAAAGTCTGACTTAATTGGCTGAGAGTATCCAAACAT-----AAAAATTTCTGGGGTGAAACTTTAAAATTATCTGGACGCTACAGTACGAGAAAGTTGAGACTCGAGCTCTATGACTAGCCA-ATATAATTAGTCCAAAATGGGGCTCAAACATAAGtaactttataaattttcttaatgATGCTACTGGATAGCCAAGTTTAAAATCATCACTT-TATTCTAAAATCTATACCTGGAAATTTTTTatgtagatttctttcttt-------------------------------------------------------------------------tacctaAAAT---GAAGATTcttgat---tcccagtacagaaTTGCCTTC-----AGTACAATAT------ACCTCAGTG-----TTGAAGGAACTGGGAGAAATAGTCCCGCAGAACTCACTGCAGTGAGTACTGGAAAGATGTTCATTCTATTATTCTGTCTTCTTTATGAGGACCCTCGGGAGACATTTGTC

a score=50804
s chr3            97164393 2758 + 160039680 ATTTTAGCCTTTATGTTACTGTCCTGAAGTTCACCAATTACAAGTTCAGGTGTTTGCTTATCTGCATCCCTGTGATTGCATCAAAGGAGTGCATCAAATGTCATTCCTTT--TGAGACTT---------------CCTGAAGAAGAACTGCGTCTGGC-TTTGAGCTGTGGCAGC-TGTGTCTGGTGTCTTGGAAGGCACACCTACTTCTACTGTATTTGTGCTATCATTTAAGTTCGTGGCTTGTCTCCTCTTAGCTGAAAA----CCCAGGAAAGGCCAGATCTGGTTATCTGACAGTTGGTGCCTTCTATAGAATCTGG--------------------------------------GAGATCTTCTGAG---CCTAAAAC--------CAATAGATGGCTCAGTTTCTACTCTGTGGAAGCC--GTGTATTGAACAGGACAGACGAGTAAAGGAACTTACTTGCCTGGTGCAGTTTGATAAGGTTTTT---AAAGAGCCAGTGAACCTGCTGTGTAAGCCCAGGGCCATGGCCACAGCTCCTTGAGTTAGTTATATGCTGTGAATGAGAGCTTCC--------------------TTCAGGGACCAGGACA---------------GGAGGGAGTCAGAGGCTGGTTTTA--GAATGtatagttgtgttc----acactga-----------aagaattaataggttgggaagaggagctggttacggattagaacgggagttctcaacctgggggttgtgaccctttgggggtcgaatgaccccttccacaggagttgcctaagaccatcagaaatgcaaatat---ttacagtattattcata----acagcaaa------actacaattatgacatag---------caatgaaaataattttatggttgg-----gggtcaccacaacataac---------------------ggaattaaagggt---------------aggaagctt----------gagagacact----------------------------gGATTAGAA--------------------------------CATCGCGTCTGACTCTG-AAGGAGTAAGAGTCTCATGGGTCATTTGAGATATGAGACCTGTG--------------------------------------------ATGTTTTGAAAGTCATC------CGGTTGAGGCAGGAGCCAGATTA---GGAAGAGAGACAAAAGAGACAAAGGCGA---CCGTAGGTTATAGCCACTTGTTTCAGAAACTAGA---GAAAAGAACAGGAAGTAGGCGGCAGTAA-CACGAGCCTTATGCAGAGTCCTAGGT-GTGGATTTGAGGCATAGAAACT-ACACATCGATTCCTTAGAAACTGTTAATAACGTGGCAGTCCCTGAGATCGGGTTTAATTCACTTGCCCACTCTTTCATTCATCACTCCCTCACTAAGTAGCTGCCTGCCAAGCAGCCTGGCCTCTTCTTCCTGGTAGTCAAGTGGGACAGGAGTGCTGTAACTGAGTCTTAGGG---------TGAGTA---------------------AGGGCACCAGGGATAATAAGCCATGGTTGTATCTGCCTTCAGTTGGAGGGAGAGGTCAGGTTTCTTTCCTTCCTTTCCAAGGAGAGATTGCAGGCCTGGTGTCAGATGCTTCCGTTCATGTGTCCCAGAGGCCACAGGGTGTCATCACCGTGAGCGTCAAGAACTTTTATTCAACTGTATGTCATTTTTTTATGGTCACAACAGGTGGAGTGGAACCCCAAGCTTTTAGAGATCCCACCTCAAACTCGGTTTGATTACACTGTCACCAATCTAGCTGGGGGCCCGAAACCTCATTCTCATTACGACACTGAATACCGCAAGACCACCTTGAGGGTGAGTGGCACT----------GGGAAGCCCACGGCAGAGCTTCAGGGATTCTCCTCTGGGCTGAGTTGAGCCACCGAGTGAGTGTCCAAT----CTTCTCTTTGCCCCACTTTAGGGTGGCGTGCTTGCTGGGCAGCTGACCAAGGTGGGCATGCAACAGATGTTTGCCCTGGGAGAGAAACTGAGGAAGAATTACGTGGAGGATATTCCCTTCCTTTCACCAGTCTACAACCCCCAAGAGGTCTTGTGAGTCATAGACAAGGGCACACTTATTCATTTAGGGTCTTAGCCATGAGTAACTCGTCTTGACCCCCCCTACTCTCAT-CCAAGATTTGGGGGTGCCAGATCACTACTGAGCGATTACCCTTGGGTCATAATCTTCTGTGAACAGGTAGTCACTGAAGGCCATAGCCATTGCCTTTCAGGTCCTTGGGGGGCAGCTAGTCTGTAGAGAGGAAAGGCTTTCTCCCGGTGGGACCCA------GTGTGTGGTTTTGAGAGGTGAACAGCTGCTC---------------------TGTTCCCGGCTGCTCTGTTCTCCGTTCCTGTGTGAGCATCTCTGCCTCTGCATGTTCATGTCTCTCCAGTATTCGCTCCACCAACATGTTTCGGAATCTGGAATCTACTCGGTGCTTGCTGGCTGGACTTTTCCAAC---ATCAGAAAGGTTTGTG-TTGTGTTCTGAAAGTCA-CCCCTGTGCCAGGGGAGCTCGCTTCTCCTCACTTCCGAAGCCTCCCTTTCTCTTCCTCCATGCCTGTTCTCCTGACC-----CCTCCTGCACTTATGGCTTCTAGTTGGTCCAGTTGGAGAGGGTCCTTCAGCATCACCATCCCGCCAGTACCACCATCCAGCCTTCCGTTGCCCTTGCCAACCAGACCTCCACAGTGAGGAGTTAGATGTCCCTCCTCTTCCCAACTT---GGGCTTCTAACCGAGCTGTAGAGGGTGGCCCTGCCCA-CTCTTGTGAACAGTAGTGAGGCACTACTGAAA--ACCGGGTG--AGGAGCACTGTCAGCCGAACCTGAGAGTGCTGCCATTGCTCTGATCTTAGTGATAACCCCCAGCCTAGTCTACACGGTGTCAGC-ATGCTCGGCTCAGCCTTTCTTAATTGAGCAAGG-TGTCAAGTTTGAGTCTTCACGTAATCAGGGAATGATTG-TTATCGTCGTCAATTTCAAAACTTTTCACCAGTGAGGACTGCATTTATTTCCTTC
s HiC_scaffold_1 106860693 2928 - 233722169 ATCTCTACCTTTCTCAGGCTGTCCTTA--CCTATTTCTTACAACTTCAAGTTTGTGCATGTCTAAGTCCT----ATTCCTT------------TCAAATGCCATTCCTCCCATGAAACTTTTCCTGAATTTCTAGCCAAAAGAAAAGGTCTATCTTGCCTTTGAACTATAATGGCCTTTATCTGGCTTCTTATGGCATATATCTA-------GGCATT---GCTATCATTTATATTCATAGTTTGCTTCCTCT--ACTGAAAAGAAGAcctggaaaagccaggaaaagTTATCTCAGGCTTGATATCTTCCACAGGATTCAGCAAGTTGTCAGAACTATTAATTGAACCTGTGAAATACCAAGTTCTTTTAAGGCATCTAGAACATAGGGGTCCATAGATGACCTAGTCCCTTCTCAG--GAAGCTAAGTCTGTCGAACAGGACAAACCAGTAGAGGACTT-------CTAGAACATTTTGGTAAAAACTCCCACAGAAAGTCACTGAGGTTACCGTGTAAGGTCAGG-CCATGGTCAGGGCTTGCTGAGTTT----TATGGAAGGAACGAGAGTCTTtgcagataaaagaagaaaattttccaggcagaggaaataactttgaaaaaagagaggagatGTGAGACTGGTACTAAGGGAATTAAAGTTGTGTTTCTTGAGAATAAGTGTAGGGGACAACGATGAAGTGGTGAGGAAGAGG--CTGA---------AGAAACTGAGCCATCATAC----AGCTGTGAGGCCTTGAAGGGTTA---------CCCAGAGGAATT-----AGAGGATCAGAACTGGGAAGAAGGACTAAGGTGTCTTTTGTATGGAGTAATAAAGTTTATATTCTGATAATAAGATAGTAGAAGGGCCATTGCTAGGAACTTTTTTGCTAGCCAGTAAATCAATAGAGCTTGACACAGGAATCATGGAAAAGCAGGGAATCAGAGGTTTGAATTTTCAGACCTAGGAGAATTATTGCATTGAGAGAGACATAATTAGTTGGGAAGAGGAAAAGGTGTATAGGactagagggggaaaaaaagcttgtttttaaaattgaagtcATCACATCTGACTCAGTGAGTGTTAAGAATTTTATGGGTAATTGGAACTATGAGATCTGTGGCTCCCTGtaatgattgattgattgattgatttttccaTTTGTGATGTTTTAAAAGCCATTACATTACAGTTGGGACAGGGACCAGATTGTGTGGTATACAGGGAGATGAGGAAGAAGCAATATCTTTGGATAAGATATGCTTGTTTCAGAAATCAGATGAGAAGAGAA----AGGTATATGGTAGCAAGAAAGGATATTAAACAGAGTCCTAAGCAGGGGATTCCAAGCATGGAAACTTGCAGATTAATTCCTTAGAAATGTTTATAAACATGG---TCTCTGAGATCATATTG----------------CCTTCATTCACT----------TAGGTGTTTGTGTGCTGGATATTCCATTAT-TCCTCCCTTGTGCTTCAGTGTGAGCTTAGAACTAGAGAAGCCACTCAGAGATGAGAATTTAAGTAGCAATAACAGGACATGAGCTCAGGACAACCAGAATAGTAAATCATGatcatttcttcctttgattGAGAgtaaaa-------ttctttcctttctttccatggGAACATTATAGGGCTGCTGGCTGTTAATGCTGTT----------------------------------------TCAAGAACCTTtgttaaaa-atatgc---ttttttatGGTCACAACAGGTAGAATGGAGCCCCCAACTATTAGAGGTCCCTCCTCAAACTCAGTTTGATTACACAGTCACCAATTTAGCTGGTGGTCCCAAGCCACATTCTTCTTATGACTCTCTCTACCGCAAGACCACCCTGAAGGTGAGCAATACTTTTCTATCCTGGGAGGCCCACTGCAGAATGTCAGTGTTTCTCC-ATGGGCTGAGCTCAGCAGGCTGTCAGGTGTTTCATTGTTCTCCTTTCTTCCCCACTTCAGGGGGGCATGTTTGCTGGGCAGCTGACAAAGGTGGGCATGGAGCAGATGTTTGCCTTGGGAGAGAGACTGAGGAAGAAATATGTGGACACCATCCCCTTTCTTTCACCATCCTTCAAACCCCAGGAGGTCTTGTAAGTCGCCAGAAGAGATGCTGTACCTGATCTAAGGTCTTGAGTGTGAGCA---TATCTATACAGATCCCACAGAAGTATCAAATTCTGTGGGAGACACTTTGCCATGATGAAGTTCCTCTTATGTCATAGGATCCTGTG--------GTCACTGGAGATCACATTCATTGATCATTGAGTCCC---------ACCATCCTGAGGGAAATCAAGCATTCTTTCTAGT----CCCATCACACTCATTTGATCTTGAAGGATTCCCAGCTGTTTAGCAGAATGAGGTAGAACTTATGTAATTGG-------GTTTTCCTTT----TATGAGCatctctgctttttcat-----tttttttccagtattcgTTCCACTAACATGTATCGGAATCTGGAGTCTACTCGTTGTTTGCTGGCTGGCCTTTTTCAGCGTGATAAAGAAGGTTTGTGTTTGAGGTCTAAAAGTCAGTCCTTGTTCTCGAGCAGTTC-TTTGTTTTCACTTCCAAAACACCC----CTCATCCTTGGTGCCTGTTCCTTTGACCTTTCTTTTCCTACACATGTGACTCACAGATGCACTTATTCTAGAAGGTCCTTC---------------CCAG--------TCTAGCCTTGTGCTTCCCTAGCC-ACCTGACCTC----------------ATGTACCTGGGGCTCCTAACTTTTCAGGCTTCTATGTAAGTTGCAAAAGTTAACCCTATCCAGGTTTCACGAATAGTACTGAAACACTGCTGACAATATAGGATGGCAGGGGGACCCTTAGTTGGGACCCTTAGT--TGCTCCTACTCTGATACTGGTAGTAATCCATAGCATGATCCAGATGGTTTTGGCAATATTCTGTT--GGCTTTCTTCGGTGAGGAAGTCTATCAAGTTTGGGTTTTGATGTATTCAACCAGTGAGTGATTGCAGTTAATGATTCCCAAATTTTTGACCACCAGTGGCTGCATTTCTTACTTTC

a score=21561
s chr3            97167591 1201 + 160039680 TGATAAGTCACTGTCTTGACCTATGGAAG--TGAATTGGGGGAAACAACCAAATAACCCAAATCTGATGAATCGGGGACCAGCCAGTGTTAGAGGATACCCACATGCCAGTCCTGGCTGTGCCT-GGGGTAGGCCATCTTTGGAACGAGTCAGAAGAGCACCGATCTAATCCAGGTCT--------------------GTGGCCCAGTAGGAGGGTGTGTGCAAAGCAAAGCTGTTCCTTTCTTCAGTGCTT--------GGAGGAGAGCCGTGGGCAGAGCTGGGGCAGGAACTGCTGGTAAAGTTGA----CCTTG----ACATCTTCG------GCCTG--GGTTGTCTCTGT----AGACAAAGGGAAGTAGAAGGCAGAAGTGGGGGT-CTTGGAAAAGTGAGCT-GAGCCCCCTACCACCTGTGCTTCCTCTTTCCTTGCAGGGTCTGCCGTCATCCATACTGATGAGGCAAGCTCTGAAGTCCTGTACCCCAACTATCAGAGCTGCTGGGTCCTGAAAGAGAAGACTAGGTAACTC-----AAGCATTGC--------GGGGCAC-------------------------------------------------------------------TCAGGCCTCCCGGGCTGTGCGAAGAATGTAAT-------------------------------------------------------------CCAGACCAGAAA----------------------------------------------------------------------------------------------------------------------GGATACGGTTTC------CAGACAGGTCTGAGCTATGC------------ATTGGTTCCGTAAAGCAGGTAGAA----ATCTCCGCCGAGGGTTAGGATTTGGAAATGTTAGCCTTTTGTTCCAGCACCCTAGCTCTTGATAACTTACATT-Acaagtcatttagctt--------cttaatgtgttcatctataaggtaggaataatattgctaaccataccagattgttgtaaggattacacgaggtcgtaaacactgaacaaaatTACATTGTGTAAATTACTGATCGCTGTGCAATAATAACACAAGAACCTGTGGGTTTGGGCAGGGGCCGGAAGAAGGCTGCCATTTCGCAGCCAGGCATCTCAGAGGATTTGGAAAAGGTGAAGACCGGGGTGGGCATCAACAACGGTGATGACGTGGACTTCTTTGTTCTCCTGGACAACGTGGCTGCTGAGCAGGTAGGAGAACTG-TTTCCCCGGGGTCCTGGGTTTT--GGGAGCCATGGGGATGGGCTGGCTCCTAACTTGGAACTGACTGGAAGCCCTTCTGGTCTGCAGGCTGCTGTAATGGGGTTTGTAAATGGGGTGCATGTGAAGGCTGAAGGGCCCAGATCAAC--------------------------GGAC-CCTCACACAGGA-CCCAGACAGT----TCTAGATCAGTTTCTGGAAGTTCATTTCCCACATTGC
s HiC_scaffold_1 106865865 1539 - 233722169 TGATAAGTCACCATACTGCCCTATGGGGGGTTGATCTTTGGGAAGCAAGAAAATAATCTTGTTCTGATCAAGTTGGGAACAGCCTATTTGTGAGAACCCCCA------AGTGCTGATAGTGCTTCAAGGCAGGGGTGCTTTGGAATGGGG-AGGGAAATACCAGTCTTATCTTGGTCTCTATCTGCTCCAGTCCACTTGTGGCCCACTAGAAGG---CATATGAAATAGAGAACAAGCACTCTCCAGTGCTCAGGCTATCGGAGCGCACCTGGTAGCAGAGCCAGGGTG-----TGTTGAAGGCATTGAGTATCCTTACGGAGTATCTTTGTGATCTGCCTGTTGGAGCCCTCTGTCCATAGACAAAGAGAAGTAGTA--CAGA-GTGGGGTTGCTAGGAACAAAAAGTTTAAGCTTCTTCCTGCCTGAACGTCCT---TCCTT-TAGGATCCATCATCATCCACACTGATGAGGCAAGCTCTGAAGTCCTGTACCCCAACTACCAGAACTGCTGGGGCTTGAGGCAGAGAACCAGGTAACTGCCCTGAGGCTTTCCCTCACCAAGGGGAACAGCCTTTTCCCACCTCTGCTGGCAGACTGCTTACACAGGACCCTGCCTGGGTTTACCCATGTTTGGGTCAAGCCATTCTAGTTGGAGAGAGGATGGCATGTCGTGAACTGGGCTTTGCTTTACAAAACATTATTCCTACAACTCTGGACTGTAGAGTGGACCAGATGAGAAAACTGGCAGGTAAAATAAGATGATTAAGCTGGTTGTCTACTTGCAAGTCCAAATGCACAAGCATGAGAAGACACCGCCTTCCCTTCTCTTTACCAAGATGCCGTGGTGTAGGGTGGATTGGTCACGTTTTTGGGCCTCAGGTATTTCTGGGCTATACTAAGACTGTAATATCTGTTCCGTAGAAGAAAGAGAATGTTGTTTTAAGATAGATATAGGATTCAGAAAGTCTAATCTTTTATGCTAACAC--TGATTCATgctaatttacttttaaaagtcatttgaCATTTTTGAGCCTCACTTTACTCATCTTTTCAATGGGAATAATACAGCTCATGACATTgg---gttgtgaaaattaaatgagatctCAAGTGTTGAACACAG---CATAGTGCCAACAGTTGGTCATCATACTATTTTAGgggttccttttatttttttcaacagaGGCCGAAGGGAGGCTGCTGCTTTGCAGCCAGGGATCTCAGAGGATTTGAAGAAGGTGAAAGAAGAGATGGGCTCTGACAGTAGTGATGAAGTGGACTTCCTCATTCTCCTAGACAATGTGGTTGCTGAGCAGGTGAGATCCCTGTTTTCCCCAAGGTTGGGGGCTATGCGGTAGGCGCCTGAGAGGGCTGTCTGCTGACTGAGAACTGAGTGGAGGCTC-ACTGGTTTGCAG---------ATAGGACTTGCAGATGGAGTGGACTTGGGGATGGAGGGGCCTAGAGCAATCAGGGAGGGATAGAAACAATCAGGGAGGACTCCTCACTCAGGAGCACAGACATTTAACTCCAGATCAGTTTCTCAAAGCATGATCCTTATAATGC

a score=66700
s chr3            97171461 5518 + 160039680 [encoded data, 6249 characters]
s HiC_scaffold_1 106868131 5520 - 233722169 [encoded data, 6249 characters]

a score=82470
s chr3            97181987 7515 + 160039680 [encoded data, 8739 characters]
s HiC_scaffold_1 106876001 7764 - 233722169 [encoded data, 8739 characters]

a score=7140
s chr3            97190914 331 + 160039680 ACTCACTACTGAAGCCACTCCAGATCTTGTCTTTGCATTGCAAGCTCTGAAGTGA--CTCAGAAGTGCTCAGATAAACC-CTGAGTACACACACCTGTGTTATCTGAC-ATCAATTTCACAAAAACGTCTTTGCTA-----------------------------CCAGCACCTGGAG--AGGCAGAAACAGACCTGAAATGACAT--CTGGTCTTGGTTTTTGCCGAACCTCTCTCTGCAGT-GTCCTCTGGAATGTGTCTTCCCACAAAGCTCTGTCTCCTTTACCTCAAGTGGCACTTGCTTCATTT-ACTGTCTGGTATCTTCCACCCTGGGCCCAGATTCCTTCCCTGTGTCTTGT---GATTTCTCT
s HiC_scaffold_1 106883798 362 - 233722169 ATTCGCTGGAGCAGTCACTCCAGATTTTCCCTTTGCACTGCAAACTCTGAAGTTACTCTCAAAAATGCTCTGATAACTCAATAAACATATGCACATATGTTATCTGGTAACCAGTTTCACAGAAA-ACCTGTGATGTCCAGTGTGAAGCTCAAAAAAGTCAAAATCTATCactgagagaaagggagaggcaAGGCTGAGATTCCACTGCTGACTTTGGGACCAGCTTGG-TTTTCTCCACATTGGTCCTCTTGGATGAACTTTCCTTT--TGCTTTGTCTTCTTCACCACATGCAGTATTTgcttcttttcactttctgttattttcctTCC----CCCA---TGCTCACCTCTACCTTGCTtggattccttt

a score=12120
s chr3            97192839 1617 + 160039680 aACTCCAAATCCTTTTCTTTCCTAATAAATCTCTCCAATGTAAGCACTCtgttcttcaggctg-aaatggccaaatgagcatggttaagagggtcgtag--ttttggggaagggagggcagagcaccgggttgcttttaatgagttcagatcttcctgtctgatgaacgataccctgaaatagataaagaa-ctcacaCGAGTTGTGTCAGACAGCAACACGTGACAAACCAAGAGA--GACATATTTCTAGTCTCAGAG--CGAAAACACAAAGGCAAAGATGACCTCAGTTTTTAAAATCCACCTTGG----------------------------------------------------------------------------------ACTATAGAA----------------------CCGAAGACTGGTGATG--CCTTATTTCC-----------------CACAAATGAGAGGCTGTGAGCAC------AGGAATGAAAGCAGTTATCATCCTTTGGAGATGGAACT----TAAATGATTTCCTTGCTCCTGTGGGCTAAGAGGCCAATGGATGGAAGACTCCCTGGAAATTTGCTAACATTGTCC--TTGGTAGGT---TACCTAGCTTAGATGATAGCTACCTCCTCTTCTTTCCCGTCATGCCTGGACTTGTAAACACTC----------TGACTTCTTTACTAGACTCTGAGTTTGGTGGGAGTGGTTTAGGACCACATGTGATCAGTTTACTGCTGGGTGAATGCT---TAGCCTTGTAGGTACTAATAAAAGAATCCTggggctggagagagaggtcagtggttaa---------gaggttaatttactgctcttccagtga--acccaag-----------gtaggttcctagcatccatataggtcagct---cacaactgcctataactt----------gaagac-ctataacaatgcccttttctggcctctgcaggcacccatgcacacatgctacatgcaaacacacataTgagagagagagagaggc-agataga------cagagagacaaagacacatagatgcagacagagccacagaaatagagacagacagagaATGAATTATTTGATGGGTAAATGGACAAG--GTGAATTAGGTAAGGAAACATAATGATTATAC--ACATACATT----------TAAC--------ACTTGGATCAA----GGGC--------TGGATTGATGTCAATGTAAAGATTAGCTCTAACAGTTT----------TAGAAAAAAATATGGGC----------ATTGGGGTAATTCA---------------------------------------------TTTCATCA--------CTTAT-----AAAAAAAAATCTTAAAAAATAAGCAATGATggctggagagatggctcagtggttaagagcactgactgctcttccagaggtcctgagttcaattcccagcaaccac--------atggtggctcacaaccatctgta----------------------atgggatctgatg-----ccctcttctggtgtgt----ctgaagacag----ctacagagtattcatataaataaaaataaatctta-----------aaaacaaggaaa----aTAA----------ACAatgagtgcatagacaaa------tatatatcatacaatggagtataaattagcctttaaaaggatacttaattctgacacatctacagtgtggatgaacctta--------atgctaagtgaaacaggtcagacacaaaatcacaaatatgatacaattctacttatggggaattcctaaaataaaaataaaaataaagaagaaaggtagagaggccattgccagaacccacggaa--caggaacgggcagatgtttcacgt----ggagcttccgtttt-tatcttggagaatctctggagacagatggtggtggtggatgctgc
s HiC_scaffold_1 106884465 1945 - 233722169 AATTCCAAAATCAtctcttttaaaacaaatg--------------aatctGT-CTTCAAACTACAAATGGCCAAAGACACATTGTTGGGAGGGACTGAAACCTTAAGAGACATGAGGACATCATGTCTGGTTGCTTTTAGTGAGTTCAGATCTTTATATCTGA---ATAATATCCCAAATTAGGTAAAGAAGTTAACAAATGTCTCATCAGATAGCAATCTATGAGAAATTAAGGTACTTTCAGAGTTCTAGTCTCAGAGAACAAAAACACAAAGGTAAATGT---CCCAGTTTTAAAAATCCTTGATGGGGCTGAGAACATAACTCAGCAGCATGATCGCCttcctggcaagcccaaggtcctgagttcaattcctggcacccaaacaacaacaacaaaaagccctgGATGGATCCTACACTCTGAAGACAGGTTATTTTCTTGATCTCCAGTAAAGCTAGAATAGACTCAAACAAAAGTATGTGAgcatttagggggaaaaaaaagcagtgaCTGCCACTGAGAATCAGTACTCTGCTAAatcatttctctgttcctttgg---------ttAACAGACTAAAGATTCCCAAGAAATTTGATAAAGTCGTTAAAGTTGTATGTATTTCCCTGTTTTGTATGTCAGCAGCTTCCTTTTCTTTG--GTTACACTTGTGTGTGTAATCACTTGTTCAGTGTGTGATTTCTTCAATAGACTCTGAGTTTCATGAGCAGAGTTTGGGGCCATCCCTGACCAGTTCACTGCTATATCCATAGTTTCTAGTCTTACTCGtacagattaaaagaaaaaagaact------aataTTCAGTGGATAAATGAATAATGTGAATAATATGTAGACTTACAAGTGATTACACAAGTACATTTTAAAGTGTAATTATTAAATCAATGACAGTCTAATGAACAGAACTAACTATATCTTTCTTAGAACAAAAGATGAGGCAACAGCTCCATAAATTGGGTTTGACAATGATTTCTTGGC---TGTGACAC-CAAAAACAGGCAAGAGGATGAAAAATAGATAAGGTAGACTTCATCAAAAATTGTAAAAAACTTTTGTGCatgaaagaacacaaaaaagtgaaaaggcaGCCCAtgga--atgtga-aaaaatatttacaaatcacaaGTCTGATAAAGATTGATATTCACAATATTAACAAACATTAGCAactcagtaacaaaaacaaatccTGTTCAAAAATGGGCAGTGGACTTGAAtggatatttctccaaagaagatatatagATGGTCAATGAACGCATGGAAAAGATTCTGAACATCATTACTTATCAGGGAAATACAAACCAAAACTCAGTGAGACATCACTTTATGCCTTCAGATGAAGACTTTCATTAGCAAGGCTTTTattacaaacaaaacaaccaaagaaAATAACCAGTAATGAC-AAAGACATGG---AGAGGTTGA-AATGCTTTTTACATTTctggtag----gaatataaaatgaTGCAGCCGCTGTAGGAAACAGT-----ATGACCATTCCTAAAATATTAAGCATAGAATTCTCATATGATCTCTTGATTACACTTCTTGTTATATATTGTACTCAAAAGAGGGGACTCAGACGTGTGTACATTCATAGTTGGCAGCGTTATCACAGTAGCCAAAAGGAGGACATACCATAGTGGTCTCCTTATGATTAATGGATAAGCAAAGTATGGTATATA-CATATAGTGAAATAT---TCAGCCTCAAAAAGGA-ACATAATTCTGACACATCTACAACACGGTCGAACCTTAAAGatgttatgctaagtgaaataagcaagaCACAA----ACAAGTATTATGTGATTCCACTTGTGTGAACTACCTAAAGTAGGCAGAgtcatagagacagaaaatagaaaaggggTTGCCAGGGTCTCAGGGAGGAAAGAATTGGGAGCACTTTCACAtttacagagtttcagttttgcattatgaaaaagttctgga-------agtAGCAGTAGTTGTTGC

a score=13998
s chr3            97196660 892 + 160039680 TAACTCATTATATGGCACAATTTTCTCAACATCTGTTGGAACTGGTGCTATCCG-CGGAGAAGCC-AGTGCTGCTGAGCTGCTTCAGTGGAGATACACGTGACTTCCACGCTG-----TGGTTGAATCCCctccattatc----tttccgttgctcagtctcaaagcctcagagtcctgcctgact----tctcccttctcctg--gtatctaatgacatcttggctttcttccctcaaagcacattcagttcacccttttctctccacgccattgcccgcagcctcatcTCCAAATGCGAAAGTACTGAGTTTGCCACTGTAAGCTCTTTCGGTTTTGCCTTTACCCTGTTCACTTTGCATGTACCTGCTCGACTCGTTTTATGAACAGTGCACCA-ATAATTGCCTTGATAAAGACCAAAGAGCGCACCCCAGTTGATTCCCACATCAAGATGCAATCCCGTCTCTTGGCCTCTGAGGCTGTTCTTCCTTCCAT--CTTTCCAACTCCATATTCTATTACTCAACTGATTTGCGTTACTTAAGCTG-TCTCTTTGATGTCAGCT-GCTTCCTTGCCCTGACCTGTTCCTTTCCACTTCTTTTCCCTTAGCTGCGGTGAGCCTTTGTACACCGCCTTTCTGATTCGTTTCCGGCTCCAAT------CCATGTATCACAGCCACTGTGAAATACTCCCTAGCTACCCATGCTCACACGGATCCTTCTGTTCTCTGGtccatttaacaaatatttactgatctcttgtcaaatgcagataccagatgctaggtgctagtgaacaactggtgagcaagagagaacaggtccctgacgtcataaagtggctcacg-gAAGTTATTGCTAAGGGGTATGTAATCAAGTTCTGTGATGCTGA-----ATtgtgtgtgtgtgtgtggggggg
s HiC_scaffold_1 106887144 818 - 233722169 TGATTCATTATATGGCAAAAATTTGTAAGCATTAG-----ACTGATGACATTCAATGGAGTAGCCTCCTATTACTGGATGGCTCAATAGAGGCCCCATCTGGGATCCCTGGAGAGTAATAGGTTTGTGCTTTCTATCACCATgattcttgtttct-----ttaaaatcttgGTATTGTATTTGACTCCTATCTCTCTTCCCCTGCAGTATCTACTGAAGTCCTGGGAATCCTTCA---------GTTGACTTTACCTTTTACTCTCCATCACATTGGGAAGATCCTCAGCTC-------------------------------------------TTTGACTACACAATATT------GTGTGT---TGCCAGCCTCACTTTGTAAAATACCTATCATGTAATTATTTTGATCAAGACCAAAGAGTGGGTCCCAGTTACTTTCCATATTAAGATAAAATTC----------CTTTTGGGGCTGTTCAGCCTTCCCTCCCTTCTCAGTTTCACATACTATTACCCAAACAGTTGATTTTGATTAAGCTGTTCCCTTCAGTGCCATCCAGCTTCACTGT---------TACCTTTCCA------TTCCCTCAGGTATATTGTCCCCCTGT-----GTTTTTTTCACTCCTTGCTGTTTTATAGGGTGTACCCAATACTAAAACTACCACAAAATCTTCCCTGGCCACCCAAGCTCACACCAATCCTCCTTTCCTC----ACATTTCACTAATGTTTATTGACCTT---GCAAATGTACAGGCATTATGCTATATGCTGGTAAACaaatgacaagaaagaaaaattgggcTTTTGATTTCACACAGTGGacaagataaaataatttctatgaaGGACACAAACAGATACTATAATACAAAATGAcattgtgtgcatatgtgtgttaGGG

a score=494034
s chr3            97199448 13171 + 160039680 [encoded data, 14530 characters]
s HiC_scaffold_1 106889772 13637 - 233722169 [encoded data, 14530 characters]

a score=176028
s chr3            97212692 5815 + 160039680 [encoded data, 6792 characters]
s HiC_scaffold_1 106903851 6463 - 233722169 [encoded data, 6792 characters]

a score=8511
s chr3            97218863 318 + 160039680 TTTTGGTTTCAAAGTACTTTTCTACATGCCATTTCTTATTCTCTCAATGTGCCTGACCTTGATCCACAGGTATTTCCCACTGGAATGAACCAGAacaaacacacacacacacacacacacacaAATGGCCT---CTCTAG---CCAACCAATGTTCTCAGACCC----------CGCCCT--CCTTACTTTCTGGATGGATAGACAGAATAGAGGCCGAGAGGAACAAGAGGCCTCATGCAA-AGACTGAGAATAAAATCCAGGTTTCTGACTCTTAACCTAAGGGAGGTG--------AGATGAGGCCTAACTTTAGATTGCCACTCTGAGAGAACAACCAAGC
s HiC_scaffold_1 106910304 325 - 233722169 tttaattttcaaagta--ttccTACATAAAATTTCTTCTTGTCACAATTCACCTGACCTTGATCAACAGGTATTTTCTAC-ATAATGAAC-AGAGCACAT---------------CGGGCACAAATAGTTTTATCTCAGGTTTCTAATTAGTGCTCCCAGGCTTTGGATCTTTACGCCTTACCCTTACTTTATGGATGGAGAGACAGCACAAAGGCAGAAATAAACATGAGTGCT-ATCCAGTAAATTGGGAATAAAGTTCAAGTTTTCAACCCCTAATCCAAGTGAGTTGTTGAAAGAAAATTGTCCCTAGCTTTAGTGTTTCTGACGGTAAGAACAACTGAGC

a score=119453
s chr3            97220705 6453 + 160039680 [encoded data, 7438 characters]
s HiC_scaffold_1 106912379 6661 - 233722169 [encoded data, 7438 characters]

a score=41383
s chr3            97234517 1541 + 160039680 ATCATTGCTATTTTTATCAAGGACCTACTAAATGCAGGACATATTAAGGGATC----------AATCCTGTGTG---------TCAGGGTC-ATCAGACCTGAGCAGttctttcatttaaaca--ttaaaatgttgagtaagtgcccactgtgtgcctcccgaaaaatactaaaaa-ttcaagatagaaaaggaaacataaggcaccccctaccccatgctgggatctgga-----gtctagtttaaaatactgataagtacacatttataatcagttataataa-----ctgatacggataaataccgggtgct-ggatgtacgcaaaagaaatatgtctaggtagacaggcgacttaatg---caaaaagacccaagcagactcttaaggaatgcgtaggagcgagccgagcagaggactcagcaatgggcaagagctcagctgtgtgacaatgtatataaatagccacaaagcaagaaCGGGGCCGATAAGTAAGTAGCAGCGGGCGCAGAGGCAAGAAAGCAAAATGGCAATCAGAGGAGCTCCGTCGTCATCAGAGGGGGCAGGGCTAAGGAAACCCTGCTTCATTGAGGCAGAGGCAGAAGAGG--------------------CTCAGACAGGCGGCTCAGCCAACGCCCCCCCCCC--------CTCCATGCAGTGCCCCACACAGCAGAGGGGCGGTACCTTGTTTGCTATGATGGCATCTAGGTT------TTCCACAGAGAGGGTGCTCCTCTGCCTTCCCAAAATGCCTATCTGGTGAAATGCCTATCTGGTGAAAGGTACTTCTGGGCGGAGGGGCTCG------------TGGCCC--------GTAGGCCg--tgaccttaggaaaagaacttgactgtgctagacctcgt--ggtttggattaaggatgatagttttcttcctcaagcattgttggaataagtgactatgggtggctacacacagatagtatgtatactacc-caaagcagacaaaataactacccaatagatgttggttattcttATGTTTGCTTATCAA---GAGACTGTCCAAAGTGGGATGGATTGGA---AGGAGAGAACTTAGGGACCCTGAGAAATCCCCCACAATGCTCCCTCCATTTTAACACCCATCCTTACTCATTGAGatctcttttatgcttctggcctgatcctttaaattctgccattagaa---atacctttggatttACAGTATCGCTTCCCC-------------CAAG------CTCTTGAGGGA--AACACAATAAAGGGTTAACTCTGCTTTATTCTAAGAAGTTATCTGACCATAGTCATATCCTCTGAGGCTACAGACTGCACCGAAGGAATATTGTGGGG-AGAAAGAAAAAGCTAATTTTGAAACCTGGAGGTCTTCCCTCAGAAATTGAAGGCAGGCAGAGAGCTGCTCAGAGGGCATCC----------ATCCCTTCTGGGATTGGAGGAAGGGGTTGAAATTGCAGAGAGATGCCACGAAGTCAGAGGAAAATAAAAACAAGCTCGTTAGTGCCCAGAAAGGCAAGGTTTGCCAACTCAAGTAGTTTTGACCTTGGTCTGGGGGCGTTCTTCATCACCCATCCCTTGCTCTACTCTG-----GGTTTGAGAATAAGTCACTCTGGCCAGGATCGGTCTT
s HiC_scaffold_1 106925521 1630 - 233722169 atcaCTGCTATATTTATCAAGCATCTACTAAGTGCAGGGCATCTTAAGAGATCCAAAAAAATGAATCAGATGTGCAATGTCTTTGAGGTTCAATCAAACTTGTACTGAAGATTcattcaaaaaacacaaaaagtttagTAAGTGCTCACTGTGTGCCAGGTGCAGAATACTGAAGATTTCAGTGTATATAAAGGGTCATAAGACATGCAC--CCAAATGTTGGGATGTGAAAATCTATCTAGTTATGAACACTGACaggtaaatatttataattaattataataagGGCTATGATACAGA-AAATACCAGGTGTTGGGGGGCACACAAAAGAGCAGTATCTACCCAGACAGGAGAGTGAAGAAACCATAAAAACCTGAACAGAATCTTAAAGAATGCGTAGGAGTCAGCCAGGCAAAGGACTCAGCAACGTACAA-AGCTCAGCTGCATGACAATGTATATAAATAACCACAATGCAAGAAAGAAGGTAATAAATAAGAAGC----TGTGCagaagcaa-aaagtgaaatgGCAATCAAAGGAG---AGGCATTATTTGAGGGGGAGGGTATAAGCAAAGACTGCCTCATGAAGAC-GAGGCATCTGAGGTGACCTGAAGGTCAGACTTATTCAGACATGTAGTGGGGCCAGAGGCCTCCGTCTTCTCAGCACTCTATATGGTG-CCTGCATGTGATACACACAGGATCTTGGCTGctgtgatggtgatggtgatgatacCTTCTTTATGAAGTTTGTTCCCCTGTTTTCCCAGAATGCTTCTACAGAGAGACTTATGATTCAACAGAGCCATTTCTAGGAGGTCAGACTCTGATTTAGGATCCTAGCTCTGCCATTAGTAAGCTGTATGTTCTTAGAAAAATTACTTA--CATGCTAAGGTTCATAAGAATAGTAGTAAGAATAATAGTTTCCTCTCAAGGACAGTGTGAGAATAA------ATAAGTGACTACATGTATACCACATATGAAATATTGCATGGC--ACACAGTAAATGCTTAGTAAGTATTATTATTAAGTATTATTGATTGTTACCTTTGGATTGTCCAAAATAGAA---ATTGGCCATAGGGGAGATTTTAGGGGCAATGAAAGG----CCACA-------TTTCACTTTATCA--CAGCCAGTGTCACCAGCACGTCTGTAATGTTCCTGGCA-AACTCTTTTAATTCACCCAGAGAAATTTATGCCTTTGGGTTTAAGATGTCACTTCTCCATACTTTTGGATTTAAGAGGTAACCCTTGAGAAATTAGCACAATAAAGGGCtagctctgttttattttaggaaGTTATCTGACCATACCTCTATCCTT---AACTATTATCTGCACTCA--GAATATtgtggggaagaaagaaaaggctaaTTCTGAAGCTTACAGATCTTTTCACAGAAATTAAAGCCA-GTGGAGAGATATTCAGAAGGCTTTCTGATGGCAATAAATCCTCTGGGATTGTAGAAACGAGTTGAAATTGGACAGAGATGCCAACAagt--gaggaaaacaaaaacaaggtaaTTGATGCTGATAAAGAGAGGCTTTACTAAGTTAAAC-GTGCTGATCTTGATTTTGA---ATTCTTTACCAAACACCCTTTTCTTCAGTCTGTGCTATGTTTTGGAATAAATACTTTTGCCCAGGATCAGTCTT

a score=14183
s chr3            97237228 827 + 160039680 AAATGCAATGAG-AATTAATTGAAAAGAACAATCCAGGGAAAGCAT--AAAAAAGAAACATTGTTAATT-------AAAAAGAGGAGGAAAAGGCTACAGTGTTGAGTTGACTCAAAGCTGCTTGTGTTACAGCCTCCTTCTTAAGGCATCCTAACTGTGCAcccataccacagatgaacaaaccaatctggagagggtaaataactttcttagacctcacagctgt-taaatagcactaaaggtccaagatttaaatgtgaggctggtggcaaaacctgtgttatagctgctgtcccacggcccctAAC-CCTTGAGCAAGGGAAA--------------------CTCTGCAA---------------------GGGA---------------AAAGCTGAC--------------------------------------------------ATTTGCATAGTATTCTTCAAAGCATTTCTACACTCACAGCTACATGTGAGCCTTATGCAAATCATGTGACTGGACCAGGAGATAGCTAGCTCCCAAGAAGTGATAATAAT-------ACGGTCATTAACAC--TCTATGccaacactggtttgagtgctttctctac-ctggcatcatggtaagggctttctaagctaattctatta--gagaacaactctataactcagcttctattcttagctcactttgctcgtgagaaaatggggggtgggaggaaaggctaagggaGGTTAatgaaagaactgggctttgagaagttacaggactagctcatggccatgtaactatgtagggctgctgctggcaatgccaagacttccctggtgtcacacccatgcctgcctgacCTTTGCAGGTTGCCATTCT----ATTAACCTGCAGCTTTGGGAAGGAGGGTTTGCAGAGAG--CGCAACAGGCAAG---GAAAGCAGCTAAAATACATGTGT
s HiC_scaffold_1 106928720 902 - 233722169 AAATAAGATAAGTAAtta--taaaaagtataatttagagaaaatatgtaaGAAGGCTACACTGTgaattctttcttaaaaa----attaaaaaacta---------gtTTACTGAGCACCATCTGTGAGACAGGTTTCT--------------------------------CagatgagaaaatcaaaatggagaGACTAA-TGACTTGTTCAAGGCTCACAACTATACAAAAAGCAT---AGGATCTAGACTTGAATGCTAGGCTAGTGGCAAAGCCTGCCATCTTGGTGCTGTTTTTCACTGACTATCTCCTTGAGCAAGGGAAAAACGTTGTAAAAAATAACAccattgcaatttttttttccatttgatactgggattgaactcacaacctcaggcttaccaggcaagtacttgggtcactgagctaaatccccagcccttaccaTTGCAATTTTTATGGTATTCTTCAAAGCATTTTCAAATTCACAGCCATACCTACTCCTGATAAAAACCATGTGAA-GGATTGAGGAGTGGCTCTGCCATAATGAATAATAATATTCGTCATGATAATCATCAAAATAGTACAAGCCAGCACTGA-ATGATTGCTTTCCCTATACCTGCACTGTGCTAAGAGCTTTATAAGA-AGTTCTATCATTTTGGACAACTCTATAAGATAGGTTCTATTAGTAACTTATTTTGCACATGAAGAAACAGGAGATCAG----AAAGCTTAAATGATTTAATGAAGGGTGTGGACTCAGACAAATGACAGGACTAGTTTTAGATCATGTGTCAATGAGTGGTGATTCCCAACTATTACACAACT--CCTGACTCCACATCTACCCATGC----CCTTTTCATGGTACTATTCTGACCATTATTCTGCAGTCCCAGGAAGGAAGATTTGAGGAGAGAATACAGTAAACAAGCTAGAAGACTGCAGAAATTTAGGTGT

a score=62232
s chr3            97244061 1089 + 160039680 GTGGGCTTGGGCACA--GGTGGTACAAT----GACAGGGGACACAGGCTGAACCTATTACCATTTTGTTAAGGGTCCCCTAACAAGAGGGCAGGCAGAAACTACGGACTGTAAATTCGGGCGAATGCCTCCTTTTCTTCTCATCTCAGGAGCTCCCGGtctgttttcttgttgaaaaaccaggcaataataaaacttatcacccactcatctcttgggagtgctgcaaagagcaactgatacacatatataaataagcttaaagctctcagcaagagtgaagtgtgctagaaatgCCAAACAATAATAAATCCAACCACCT---TCACCAAGATAGTAAACAAGGTGTCTTTTTA----AAGAGCAAATGTAGTTAACCAGGCACTAACTTTGAG-----TTATATAGCTTCTAACAACAAGTAATTAAATCTAAACTCCTGATTTG----AGTTCTTTCATTAGAGGGTCTCAGAGTGACCCTAATACGTACATCAAACTGAGGCCCCAGACTATATAGCGATTAATTAACATGAACATTACTTTATCATCCCTTCCCTTGCTTAGTATCCTGCTATGCCACTAATATCAACAGACCCACCACAGGCAATCTCTACC-----CCAGAGCTGCACTCTTTGTCACACCCCTGAGGTCCGGCTCTTGGCAGAATGATGCCGTATAAAATATTCAGACCCTAGGTAGGATGCATGCAGTCTACAAGGGGAGA-TGCTGTCAGACAGAAACACAGGGGAAGAAGAAGAAGAAGAAAAAAGATCCACTACTAAAATGACAAAGACAGCAAATTCGATTTTAAAGGAAGGAGCACATCTCTAATTATATGTTCCACGCATAGCAAAGCTCTCCTACTAAATCCCATCACAAGCTTTGCTCCCCTGAAGAGCAGACCTGCTAGGTAATAACTCCCCTTCTCCGTGGTAAAATCCAATTTTCACACCTGGTAAATGAAATAACTCCACTGTGAACCAAGGGCAGGTTGGGGTGAGTCGCTAACAGAAGGTTAGGGGCTCCGCATCATGGAACAGCTCTTCTGGGAGCCCCTTCGTGGGATTTGCTCTTTTTATGCTGGTTGATGCTATTTGTCCAGAAAACCTC
s HiC_scaffold_1 106933586 1064 - 233722169 GCAGGCCCAGGCAGATGAGGGGTGCAATCAGAGGAAGGCAGCATGGGCTGACTGTATCAGTATTTTGTTGTGAATTCCCTCACAAGGTGGCAA----AAGCTCTGAGCTGTCAACCCAGGCAAGTCCCT--------TCTCTTCCCAGGAGCTC----------TTTTTGTTGGAAAAGCAGGCGATAATAAAACTTATCACCCACTCATCTCTTGGGAGTGCTGCAAAGAGCAAccaatatacatacataaataagtTTAAAGCTCTCAGCAAGAACAAAGTGTGCTAGAAATGctaaacaataataaattcagCCATCTCTTTCAGCATGATAGTAAAcaaggtgtcttttttttttaagagcagttgTAGTTAACCATGTACTAACTTTGAGACTGTCTAGATAGCCTCTAATAACAGGTAATTAAATCTAAAATCTTGATTTCCAACAATTCTCTCATTAGAGGGTCTCAAAGTGACCCTAATACCTCCATCAAACTGAGGCCC-AGACGATATAGC----AATTAACATGAAAATTACTTTCTCATCCTGTCC-----TTAGTATTATA-TGTGTGATTAGTATCAACACCCAAACCACAGGCAGTTCTCACCACCCCCCTATGCTGTACTCTTTGTCACACCTCTGGGGTCCATCTCTTGGCAGAATGGTGCCATATAAAATATTCAGTTCCTAGATAGGATGTGTGCAACCTACACAAGGAGAAGGCTGTCAGACagcaacactg----------------aaaaaaaaaatggatttccAAAATGACAAAGATTGCAAATCCAGTTTTAAAGGAA----CATGTCGCCAATTATATGCTCCATGCATAGAAAATCTCTTTTAATAAATCCCATCACAATCTCTGCTCCCCTAAAGAGCAGACCTGATAGGTAATAACTCCCCTCCTCTGTGGTAAAATCCAATTTTCACACCTGGTAAATGAAATGACTCCACTGTGAACCAAGGGCAGGTTGGGGTGAGCCGTTAACAGAAGGTTAGGGGCGATGCATCATGTAACAGCTCTTCTGGGAACCCCTTCCAGAGATTTGCTCTTTTTATGCCAGTTGATGCTATTGGGCCAGAAAACCTC

a score=74672
s chr3            97251557 5365 + 160039680 [encoded data, 5836 characters]
s HiC_scaffold_1 106934644 5057 - 233722169 [encoded data, 5836 characters]

a score=65196
s chr3            97264038 2857 + 160039680 AGTAATTTCCAAACTTTAAAATCTTCTGCCTCCATCTTGATCCAGC----CTCTTCTTCCTCCACAGTGCATCAGGTAACACAGTT--ATTTAAATGTCTAGCAAAATCAACGTGGAAAAA---ATTCCTGAGAATTTTGTGTCACTGATCATGATAACCAAATATTCTTGAAATGTGTCAAAAACCTGTCACTGCCAATGCCTGAGGTACAGACTTGGAGAGTGCTAGGAACATTAAACGACTCTGCAGACTCTCATCTGCGGTGATGTGCAAAGACACATCAATTCTATCTGGTTTATTCCAATTCTCTCAGGGCTATTAGATTCAATTACCAATTATTAGATATGGGTTAAAAAATATCCCTAAATTGTAACATGAAGTGGAAGCATTGAGCAGATAAACATAAATGAGAAGTTAAAGGCTCTCCTAAAAGGTTTTAAGACAGCATTTTGAAATATTAAGAC--------TTCCACTCTCCCACCCTTTCCCCCAGACACACATTTATTGTGCTTGCGCTACCCAGAAATGCAGTGTTAGGTTTGC---TGCTCTTGA---------AAGGAAGCTTGG-----------GAACAGACCAGAGAA----ACGCCAGAC--CCGGGTTTGAATCCATTAAGGCAGGTGACTGGTATGTGGGGTGACT---GATAATTGATTTGGTTCTcatttgttg-acaatcactgtgtggctagcactttattaggtgcggggca-cacagGAAGCA--------ATGGAGCAGAGATGA---CATAATTTTGTGGGGACAAC---------------AGAAAAGAGTGTGAAAGAATAGCACAGAGGAGCTAACTTGGTCTACATGGGAAAGTTCGCCTGCTCAGCATGTGCTTGCTAACCTGGTCTGTAAATACCAACACTGTATCAGGGACCTAGACTGCTCTACAtgggtgagctaacctgatctgtattgaagagctagccttgcttgtatggAGGAACTAACCTGGTTTGTTTCA---------GGGAGCTAAGCTGGTTGGCATGGATTAGTTAACTTGGTCTATATGGGTGAGTGAACCTTGTCTCTTTCTGGGAGTTAATCTGATCTGTTCTGGGAAGCTAACCTTGCCTACCATTGTGAGCTAACCTGGTCTGGAAATCAAAAGTAGCTTGAAGGGTGACATTAACCAGAGGAATAACCTAGAGTtaacctgagaaagccacttcctcctttttaggtccttgttatgaaatgaggattataagatgctatctcagggggttcctctgaagttttaatgagtgttgatatttaaagcagttagcacagcttctggcttgtagtaaatactcaataaatgatagctgccattactCTTTTTACAGCCTTTGTTGAGTTATATCAAGAATCTTTTCTctggatggtggtaagcccatgcctttaatcctagcaatcaggaaacagaggcagggggatctctgggagtttcagcctgtctggtctacagagtgggctccaggacagccaagactacacagagaaatcctgtctcaaaaaaaaaaaaAAAAAAAGTTTTTCTCTAAAAATGCAACCCTTACAAAGTGACCCTCCAATCAAATACTTCCCTTTTCTGCGCATG-CACCATGGGAGAGAGAGATGAGCAGACCACCAAGGAAG---------AAAAAGCCCTTCCCCCAGCATGCCCGACGCTCACCTTGACCACAAAAGCAGGTC-CCAAATCTCTTTAGTCACAGGGTTAATATGTCACATGAATCAGATCTAAAATTCTGGCCCCTTCAAAGGCTGCAGTTCCTCCCTGTTTAATCAGACATGAAACAAATCGCGTGCTGCGGCAGAGGCGTACAAACACGCTTTAATTACAATATTGTAACACCAATTAGAGATCTATCTAATCGAGGACTCGGCACTTCCTGCTCGGATATTACTCCCATGTTGGGATAATTACTGCTAATTAAGCTTGGAACTAATTAGGCTAAATGATCTCATTTATACCAACAAAGATGACTTCTAGGAGTTCATAAGAAAAGCTAGGGTGATCTTATCACTCCTGGAC-TATTTGGCTTTTCATTCTGGAAATAAAGCACCTT-TCCCTGACATCAAGGTGCATTCAGAGTTGGTTCTATGGAATTCTGG-ACGGGATGGAAATAGGTTCTTCATTTGTCTTCCCAGATTCTCCTACACGGGGAAACAAGCCCTCTCCACTCAAGGCATACTATACTCCTCCACAGATG-----TGTTGGAAGCAGCAGCCACTGAGCGA--GGCTGTGGCAAACGGCCATCTG-ATGCAGCCTGATTCTGGCTCCCATTAACC-TGCAGTTCTAGCTCATCTGTGTCTGCACTCCGGTCCTATCCTCCATGGGGCAGAGCACTCCAGGCTTGGACTCTGCACACAGAGCGAGGTTGGTGCACGT---TTCCCTTGCTGTGTAGCCCTCCCTCTCCCTCTCTAAGACAGGGATCAATAATAGAATCCTGGGGTGCTTCAGGAAAGGTGAACGGCATCTCC-------AGCATGGAATGG----AGATGCATGGTACTTATCAATAAAGTAATATGATTGTTTTTAAATTTCCCCCCTCATGAGCACTGTATTACCCAGATCTGAGCTGAATTCTACCT-TTACCTGTTCTGC--ATTCTTTCCTGG------GTTgtggtagcaggaagaaga--------cacaaggcacagagttaggatgcctggctatttttctggttgctctctaaccagctgtgcaacttgaggaagtcacttctccttcctagAAAAAG-CAGCACTCCTTACACA---------------------CTTGGCTGAGTGTCCTACACGTACTCTCTGACATCATCCTTACCACAGTACTCCCCATTTAAGAT--AAGAAAATGGAGACCTCAACAAGTAACTAACTTAAAAATAAAAACAACGTTCCCTGCTACTAAATGCCAAGTCTGGGAGCAGAACC-----TCACTC
s HiC_scaffold_1 106942289 2645 - 233722169 AATGATTTTCAATGTTTTAGAGGCATTGGCTCTATTCTGACCTAGCTTGCCTCTTATTTCCCCACAATGTATCAGGTggcacattttcatttaaaaatctagcaaagttaatttgaaaaaagaaattgcagagCAGTTTGTGTGACTGTTCATGATAATCTGACATTCTTCAATCATGTCAAAAACATA--AGTAGGAATCACTAAAATATAGATTCTGAGAACGTTAGGAGCGTTCAAAGAACCTGCAGGATC--------AGTGATGTATAAATGTACACACATTCTATCTGGTTTATGCCAATTCTCTTGGGATTATTAAATTCAATTATCACGTATTAGA---GTATAAGCAAAAATCTCTAAATTCTAGTATAAAGTTGAAGCATTAAGCAGATAAATATTAATAAGTGGTTAAGGGATCTACTGCAAAATTTTAAGGGAGCattttgaaatgagaagaaagaaaatatttctttatcc------tCTGCCGAGATACACATTTATTATACTTAGACTATCTGGAGATTTcactttagttttttgtttgtttttaatatttaaaaaaggaagtatgACATACTGGAAAAAGCAGATGAGAGGAGAGAACCACAGACAGCTAGATTTGGATCTGATAAGTCGGGTGACTAGTAAGTTGTGTGACTTCTGACGATTCATTTGCCTCTTAATTCTTCCACATCTGCTTTGTGGCCAGTGTTTTGCTGAGCGCTGGGCAGTACATACAGCCGCTGCTCTATGATGCATA-ATGAGCTTATAGTTTGGTGGGGAAGATGAATTGTTAAGATATAGTAAAGGATGCGAAAAAAAAGTGCCAGGAGAC-----------ACGTGGGGA------------------------GCTAGACTCATCTGGGGGT-CCAAAGTGGCCTCCTG-ACAAATGATGTTCAAGATGAG-------ACCTAAAGAATATCCCAAAGTTAGCCTGGC------GAAgcaatt--cctttctttttacaTCCTCACTTATGAAATAGG--GGTTTAAA---ATAAGCTAgctcag-------gggccaggga----tgtggctcagtggca------cagagccttccTGACAAGCGCAACtttc---------tgagttca---gttcctgatacCATACCAA--TCAATAAATAAAGTCAATCA-----ATAACCACAATGTTACCTTAtacaa------------------------gtattaaaataa--aataaaataagctagcTCAGAggatttctttaaagttttaatgGATTTTGATATTTCAATTATTTAGCACAGcatctggcacatagtaagtgctcaataaataataGCTATTTCTATTCTCTTTGCAGTGTTCTCTGAATTATATCTAGA----------------------------------------------------------------------------------------TCTGCTCTCCAAAGTA---------------------------------------TCAAACTTAAAAAA---------------------------------------GACCCTTGAACCAAACACTTGATTT-------CATGGTAGTGGGGGCGGGGGGGGCAGACAGACTGAAATTGCAGCCTCTTGGCAAAATGCCCTTAGCTCAGCC--CAGGACATTCACCTGGACCACTGAGGCAGGTCTCCAAATCTCTTTTGGTCTGAGGTTGATAATTTACGTGACTCCTATCTAAAATGCTGGCCCCCTCAAAGGCTGCTGGCTCTCCCTGTTTAATCAGACATGAAACAAATCGCGTGCTGCGGCAGAGGCGTACAAACACGCTTTAATTACAATATTGTAACACCAATTAGAGATCTATCTAATCGAGGACTCGGCACTTCCTGCTCGGATATTACTCCCATGTTGGGATAATTACTGCTAATTAAGCTTGGAACTAATTAGGCTAAATGATCTCATTTATACCAACAAAGATGACTTCTAGGAGTTCATAAGAAAAACTAGGGTGATTTTATCATTCCTGGACTTATTTGGCATTTCACACTGGAAATAAAACACCTTGCCCCTGACATCAAGGTGCAAGCAG-TTTGTTCCTCTGGAATTATGGTCCTAAATCGTAGTAGGCTC----TTTGTGTATGCAGATTCACATACA--GTGAGACAAGCACTGTCCACTCCAATTATACAGTGTTCTTGCATGAATGACAGTCTCAGGGAAAGGCAGCCACTGAGAAAGTGACAGCTGCAA--GGGTATCTACCCACAGTTTTGTTCTCAATCCCTTTTGCCTTGCAGTT-------ACGTGGGCCAATACTCTTA---------CCACAGTGTGAAGTAAGCCTGGGCTTGAGGGT-CAGACGGGCCGAGATCTATGTAAATAAGTTACTCTAC--TTAAGCCTCAGTTTTCCATCTCCAGGCCAGGGATT-ATAAAAAGGTCATGGGAAGTTTCTGTGATGATCAGTGAGATCACATATGTGGAACACGGGATAGTATTTGACACATGGTAGCtctcaataaa-taata---------atagattTTATTCCTTTAAGGGACCACGATATCCACTTCTGAATTAAGTTCCATGTCTCACCTATcctgctgctttttttctggcATAGTGcagtggaaatggaaaaaaaaaaaaaaagcacatgacAGGGAGTTCAAATAA------------CTCGTTTATCTCTAGCTAGATGTGTGACTTGGGAAAGTCACTTTTCATTCCTAGAAAATGACAACACTCACTTCATATACTGACCAGGCACTGTGTTGCTGTgctgaatgtttta-------ttttaaatttaacctCTACAGCAAGATGTTCCATTTTAGAGCAAAGCAAACTGAAAAC--------TAAATAACCTAAAAAT-GAAGCAATCCTCATCAATATTAAATGATGATGTCAGGAACTGAACCACGTGTCACTC

a score=30743
s chr3            97269520 3195 + 160039680 TCAACATGCTCTCTGTGGGTGATTTTGCAG------------CTCACCAACAGATGGCTCTAAAATTGGGTATCTCCAGAC-AGACACCTCATTCAACAAAACACCTTACACT--GAAAG---------CAGTAAAGGGCTGCTGAAACTGAGT-CGAGCTGGATATTTCCAGCCACAGGCTCCACCAG---CCATCACTGGGATGTTC-TTGGAGTCTTC--------TATTCATGGAAAT----CTTCGTGCCTGGTCTTTC------------------TTTTCTTTCCCTCTAGAAAAAGACCATTATTTAGACACTATAAGTGTCTTGTGGCTTAA-GTTTCTTGAGGCT--------ACCTGTCTCCAGAGATGATCCGATCTTGATGC--TTTGCCCTTAAGCAAGGGCATCCATCCTATGACAGGGGTCTAGGAGAAGTAATAGGTCTAG----------------AGGAGACGTCCTGGATGCTG-TACAAAGATAAGGCACTGGCTGGGGAGGTGGATTCATTAGCATATCTAAAGCTTGATCCGAAGGAGCTT---------------------------TCTTGGGGAAA-----------------GCTGCTGTCCATGCTCAGCACACCAGAGACCACGAACAGTCCTGTGTGTCTGTGACTTGCACATACTCTCCCAAAGTGCGCTTGTCAGAACTAT-GTGGAACCTTACATTTGAAACTGATAGCCAGCAGTTGAGCAGAGAGGCAGACAGACCTGGTGGGTCACCAGCACTGCCACTTT---AGCAGATAAGGGAGGTCTGCCTTGggaggaggaggaggaggaggaggaggaggaggaggaggaagaggaagaggaggaagaggaggagtaagaggaggaggagggggaggaggaggagggggaggaggaggagggggaggaggaggacggggagggggaggaggagAGATTGGCTCCTGAGATTGCtggggt-----ggggtggggtggggtggggcggggtgATGCTCCCAGGGCAAGAACACTACCTGCTTTCACTTCTG---GTCTCATTATTCTCCT-ACACACTTTCCTTCCTCCCTAGAGTTACGCATTAATTCTCTCATGGAGGG----------------CTTGATGCTTTaaaaaaaaaaaaaaagaaaagaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaaaaagaGTTGTGTACCATTAATTGTTGAGCtttttttttttttt--tttaaatGTTTTTCTCATGGCTTTTACTTGACTCAGAAATAAATGAATGGATTCCATTTTGTCTCTCCCTCCTAAATTTCCCTTAGGCATAGACC------AAATATGTGTGAAATGTCAGCTCAATTAGGATATGTTGGAAGTTATCTATGCTTCTGAAAAACAGGCCAGGGTAGAGAAGGCTCTTCCTAAACCCA-----AGGCTGTTACTGCTATTGCAGTAGGAGCAGTAATAAGAAGCCTGGGCTCCAGAAGTTAAACAAGAGCAAATGCTTCTCTGaacaacaacaacaacaacaacaacaacaacaaAAGCAAACTCCGATTTCCT---AAGTTTCATGTTGTCTATGAGCTCGGCTGTATAAGAACTCATCACCACAGCCAAGGGGTTTCAAAAAATCCACTTGTTGGAGTTGGTGGGTGTGGAGAGAGGGAAGGCTAGGAGCAATGGGTCGAGAAAATGGGTCTGGGGTCTGGGGGGCCATGGAGAGGGGTGTGGAggggatggagaggcccagtgattagcttctgtcagaggaccagggttttgtccccagcacctgtatcaggcagctcttaactttgggcatgtgcgcgtgcgcatgcacacacacgcacgcgcgcgcgcgcacacacacacacacacacacacacacacacacaGATGCATACACATGTGCATGCACAAAAATATAAAACTAAAACATATATTCTTAACTCAAAGGAGGAAAACCAGAAGCTGATACTCCCTTGTGACGTGAAATAAAACTGCAAGCA--------CCATCTGTGCAGAAGTGGCAATCCTT-CCCGCA-AGGACGAGGCTCTCAGCACCCTCTGAGG------------CCTGTTTCCCACGAGGTCCGATTTAACGCACCCCA------------TAGAAGATGAGGTAATGAGGC-CATCTAATGCAATAGCCT-----------------------------TGGGTATCTGAAA-----------GCTGTCTGTGTGTA--------GCTT----------------TCCC------------------------TTCAAAGCAC-CACACATA----------------CACAGCAT-------------CACCAAAGAACT------------------CACAGAaatgaagtgtcacttaagcttcagagcctttcaccttcattggctccttctgaagagcctcacctaagggagtttcactcttcttattttcttcttctgaagccccctgccccaatggaataaa---atagctccctaaa-----------gcACTGCCTGTACGTATACTTCATCCCCAAATAATCAGTTAATCTCCTTC-----AGGCCCCAACATCCATTTTTCCATGAAGAATGGGCCCTCCAGGTAGTCAGCCAGTCCAGTTAGACATTGGAAGGCTAGAGTAACCAAACAGTAATGTTTCCGGCTTATCTACTAATTAACATGTAGTGTGCTGTCATCTCCTGATGTGGTTTTACACCAACAAGATACTCAGTGTCTTCATGATAGACTTTTATGTCATTTTATTATTTTCTACttgttcatttttgagacatagtctgtctatgtagct----ctggaactcagctacatagaccagttgatcctg-------------attcacatagatctgcctgcc-----tcCCA-----------------------AGAGTTACCATGTCTGGT-TCTCATCTCTTTATTGCTCATGGTCACTGCTCACTGCTCATTTGATTG----------------------------------------CGGGCTCTCAGT-------------------------GAGGGTTAC--------------------------------GTTTAAGAATAA---------------GAAGTTTTA--------------AGAAACACTAATTTGAGATT----------------TTTTTAGCAACTGAA----------CGGAATTGCAAGTGTTGGGTTGGCCGTCCAGGCACGGAC-AGCAGTTGAT--GAGGATTGGGATGGAAGTGGTCTATTTAGAAAGAAAAGAATGAAAC--CCACCAGGCCCTACTATGTGCCAAGATCTCAGTACAAAAGCCTTTTATATCCACATTGGATGTGGTTCGGACTCATAGGATAAGACAACAA-GCCCACCCC-AACTTCCTGGCATTTTGCATCATGGTTCCCTGGTTCATGATTTGAACTTATATGTGGAGAGG-AGCAAGGCCAATCTCAGGGGATGGAGATGGGCCTGGGGAATCTATTGCAGTTCCGAGTCACTGAAAATT----TCAGTTGTCTAAGCAGCCAGCCAAGAAGGGCACAAGTGACTGCACGAAGGTGCCCAGGCAAGAGTGTGGTGTGGGTACATT---CGCCTTCCAGGCTGTCTCCATGGTGACATAGTAAGAGCTTGGCGTCCACGTGTGACCAGG
s HiC_scaffold_1 106950778 3188 - 233722169 ttagCATGCTCTTTCTAGGTGATTTTGCAGTTTCAGTTGTTGCTTACAAAATGATTGCTCTCAAGCCAAGCATCTCTGTCCTAGACATCCTGCTGAACATAAGATCTAGCATGTAGAAAGTAAGTACTACAATACATGCCTGCTGAAACTAAATATTAGCTAGAGTTTTCAAGCCACAGGCTCCACCAGACACCACCATCAGACTGTCCAGTAGATTCTTCAGGTACAacataaacagaaataatcttttgTGTCTGATCCTTcaactctctctttttttttttttttttgccttcagaAAATGGCATTTGTTCAGCAAAATCTGCTGTGTTAGGGTTTAAAGCCTCTCAAAACTGTGGAATTACATCTCTTAGGAAATGATTTGACCACAGTACACTTTGCCCTTAAGCA----CCTCCATCCTA-GACAGAGCCCTACTGGGAGCAGCAAGACTGGGACTTTTGTGGAGATAAGAGGATCTCTTGGACATTTCTAGCAAGATAAGGCACTGGCCACAGAGGTGCAACTGTCAGCATATCTAAAGCTTGATGTGCACAAGCTTCAGTAAAAAAGGAGACAGGGATCTTTGTCACAGGGAGAATGCCTTATGTGCATTTGCTAATTTTCCTGTGCATCACA-----------GAGCAGTATGGTGTG-----GACTT------------TGAAAGTGTGATTGTTAGAGCTGCAGTGCAACATTAAATTTCAAAC----AGCCAGCAGTTGAGTCAAAAGGCAGTCAAACCTGCTGGGTCACTAGCAATGCCATCTTCTAAGCAGATAGGGGATCTCTCTCT-----------------------------------------------------------------------------GCATGGGGAGGAG--------------------------------------------------GGAAAGATTGGTTCCTGAGA---CTGAGGTTCCTAGGACAAGCATGTGTTTAAGC---------TTCCTTGAACAGGAA-------TGCTTTCACTTCTTATCATCTCATTATTTCCCTCACATATTTCCTTTCAAC---AGAATTAGGCATTATTT---TCATTGAGGGACAATTAAATACCAAAtttgatgctttaaaaa----------------------------------------------------------aataatgggcTTTGTATCATCAATTGTTGAGCATATATTTTTTTATaggtgaaata-ttttctccttgcATCCATCTGACTC--AAATAAATAAGTGGG-TCTATCCAATCTTTCCTGCCTGAATTTCCCTCAGGCATTTTTCACTTGTAACTATGTATGAACTGTCAACTCAATTAGGATAT-TTTGAAATCATCTATGATTACAAAAAGCAGGCCAGAGTAGAATTG--TCTTCCTAAACTCACTGTGAGAATATTACTACTATTGGTAAATAAGCAATAAT------------TTC------TTAtgaaggaga--------ttttaaaaaactacagcaatgataacagcaacaacaacaaaaaacccctctCTTATGAAAAGCTTGATTTCTTACAT----TCATCCTTATAAGACACCATTGTTAAAGGCATAGGTT---------TCCATTTGTGGGAATT-GTGAGTTTG----------------------------TGAGTGCCTGTGTATGTGTACTGGGGGTACTGCAGGAGAAGGCAGGTTGGGA-----------AGGGGTTATTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGAAAACAAGAGC-----------------GGGGGAAAAACCTGA--TTGTTATTCcttcattaagtgaaataaaactgcAAACAGACAAATGCAGACTGTACCGAGGTGGAGCCCCTTGCCCACATTGGAAGAGATCCTTGCCCTCCTCTTAGGCATCCCAGCCACCCAGACTTCCTCAGGAACCAATTTACCCTTCCCCAGCCCAGCTTCTGTGCAAAATGAGGTAATAAAAAGTACCTGATGCAataacttcttttaattttttttctattttttttttatcggtaccagggatcgaactcatgaccgcctgcgtgcaaggcaggtgcttatgccgctgagctaaatccccagcccccacaataaCTTCTTGTATCCAAAATTCTCCCACCTAGAATCTCTTCTCCAGTCCCACCATGGCCTATATTAAGCACGAAGAAACTGTCATGGCAAGGCCTATCCACAAAAGC-CAGTGGAATATTAGCTTCAG-GCCTGTCCCTTTCCCAGGCTCCTTC-AAGGCTCTGTGTCTAAATAAGTTT-----TGATTATTCCTTTTCTCCGA--TTGGCTGCCCAAATTGAAGACGCTTCTGGTTTCACAAACCTTGGACTTGGTCCTgctaatacatatattttattctcaaGTTCCCAGCT----TCTTTCAAGTAAGGCACCGACATCCATTTCACC-TAAAGAATGGGCCCTACAGCTAAT----AGATCCAGATACACAGGGGAGGAACAGAGCAACC--ACATTGAAGTTTCTGGTATATTTGCTACTTTACATGCTGTGCTCTGTTATCTCTAGatgtgcttttataaaaataggatCCT--GTGATTTGATGTTAAAT-----AGCtacttacttatttacttattttggtgttttgag-tAGAATcccactatgttgcccaggctgggccccacattcacaatcctcctg--cctgcaCCTCCCAAAAAGCTGAGATAAAGTTGTTTGCCATGGTGCCCAGCTTATGCTAAGGTCTtgatgataaatttaaaatatatgccaCCTCATATCTTCA-TAATAATGA-----GTACAATGGTCATTTGCATGGCCTCttaaggttaaaaaagaaaagccaagcatggtggcacaagcctgcaattccagcacgtgggaggctgaggcaggaggattcccacaagttcaaagccagtgggctacacagtgaattcaagaccaatctgagctgcataatgagatcctgtctcaaaaacaaacaaaaataacaacaagagATTAATCAAAGAGATAAgagttttaagaaatgaaattagAAGATAGAAATTCCAAGTG-TGGGTT----ATCTAGGAAAGGACTGGCAGCTAGTGAGAGAAAGGAGGTGAAAGTGATGAACCTAGAGAGAAGGGAATTAAACATCTACTGGTACCTACCATGCACCAAGAGTTAGGTACAATAGCATCTTACATCCATCCGGCGTACAATCCCGA----------AGAACAACAATGCCCATTTCAAAATCCCTAAAAGTTTGCTTAAAGATCCACTGTTTCATGAATTAAATGAATGTGCAAAGGGGAAACAAGACCTGTCCCAGGGAACTGAGCT-GCTCTGGGGAATTTATTCAAATTCTGATTCAGCGACAGTTCTGCTCTAGTTTCCAAGCAGTC--------AGAGCACTTGTAATTTCATAGAGGTGGCGGTGGAA------------GGTGCCTTTCCCAGCTATCAACATATCTTTGTTGTGATGCAGTGAGAGCTCAGCAACAGCTCTTGGTTAGG

a score=40393
s chr3            97273505 4116 + 160039680 [encoded data, 5077 characters]
s HiC_scaffold_1 106954490 4523 - 233722169 [encoded data, 5077 characters]

a score=45903
s chr3            97281423 1320 + 160039680 TTCTCCAGAGAACCATCTCACAGTCTCTTGAAGGAAAGATGGGTCCCCCAGAGCTAATCATTGAAACTGGCCCACAGATCCCCAACATGGAAAAGTGATGAGAAAGGTCACACCCACCTAATCTTACAAA----CATTTCTATTCTGCACACATGCGCATGTGCGGGTATATTTAACGTGAATAGGCTTTCTCGTCTCATGCCTCCTCTGGCCACGTAAACATTCTGTAATGTTCCAACTGTGCTCGCTCGGTATATTTTGGTTCAAATTGAAACTCATTTGTTGCATACAAGCCTAAATGCATTATCTGGTTTTATTTTGGGAAACAGGCTCTGCCTGCCATCACCCACACTCTATCCCCAGCCCCCATCTTCCCAACCAATCCCCCACCACAGAATGTCTTTGTCAAGTTTAATATCCTTCAGGTCTGA---CTTCTCTCTCCTGTGCTCTATTCACAACGCTTCGCTTTGCCAC-AGAAGCAGATAATAAACT-GATGCTGCAAGGAAGCGTCGGGAGGGGAGGTTTTTTTT---CTTGACCCGGCCTGGCCCTGAACATAATCACCAC---GGAGGCTTTCTGTAGTTAGTCACCGT-GTtgtaagaacagatttttctcccatgtaagaacatacccaatcccttataaaatgttatcaa--gcattgccttgctgttattttatgttggtgagttacctaggttaattacatattacaCGGAATCCACTCCTCAACATCTGCTTTACGTTACTCAGCTAT-CGAAAAGTATACATGCAGCAACATTCGACATTCATTCGCCAGCTCTTTCTATGC-----------------------AGTGGCTTGAGGCTT-GCGATAGTCCCACCAGAGAATATATATAGTGGCCAGTTTGAGTTTTG---------GTTTAGCCTATTAGCTGGCTGGTTAGCCAGTGTTCGTCACTAATGGCTCAATATATGCCCATCACTATGCTGGGTTCTGAGAATTACTACAGAGATGAAAGTTAGACCTTCAGGGAATTCAGCTTTCAGGGCAGAAGTATGTAACAGAAGCCCTGATGAGCTGGGGTACCTTCCAGTGAAGGCACATAACTGATTCA-TCGTGGCCTCCCTTGCCTCTTTCGATGGACACATCGAAGGTCCATGGCATACCGAGCCACCCCTGCTAGCAAAGGTTACCCTGGGACACCTTC-CTCTGCAGgagttttctgtttatcaagagtctatgtttgc------agactatttgcactggttctttgtgttattataatatgatttaattaagtgtatttgaaatcatgagatataggtgcaaaaaagaaATCATGTCTA-CAACTTTAAGT-------ATGAGACAGGCCTTTAGGG
s HiC_scaffold_1 106961508 1356 - 233722169 TTTCCTAGACAACTGcttcacaaattctagaagcagGGA--ATCCCTCCAGGAATCATAATTGTACCCAGACTACAGATTCCgaataagaaaaattaatgagaaagtTCACATCATCCTGATTTTATGGAGGATTATTTCTGTTCTACCCAC--GCACATGCACAACCACAAT--------GTAGTCTTTCTCATCT-GTTTTTCCGATGGTCACATAAACATTCTGTAACTTTCCAACTTGGCTCATTCAGTATATTTTGGTTCAAATTGAAACTCACTCATTGAACACAAGGATAAATGTGTTTGGCTGCTTTATTTTAGGAAAGAGGATATCCTCTATATCACCAACACTCTA-------CCCCCATTTTCCAAACCAATCACCTATTAGAGAATGTCTTTGTCAAATTTAATGTCCCTTAGATCTGATTTCTTCTCTCTCCTGTGTTCAATTCAAGGTGCTTTACTTTGTCACAAAAAGCATATAATAAACTCAATGCTGCAAAGATATACCagtaaggaaatttttttttttccttgaccagg-ctggtcctgaacatcatcatcatcagagagGCTTTTTGCAGTCAGATCTTGTAATTGTAAGTGGGGATTTTTC-CTCATGTCAGAACCTATCTAATCCTTTACAAGAAGGTATCAAGTGTGTTGCCTTGCTGTTATCTTATGATAGTGAGTTAAATGAGTTAATCCTATATTAACCTCAATCTACTTCTTTATAGCTGCCTTACATTTTTCATATACACACCAATTACTCTGGAAGTAATATTAGAAATCCAGTTGCtagctctgtctctttcttcctaaTCTAAATTATAGACAGGTGGATTACTGCTTAGTTCCCCTCCCACCAGAGG--GTGTGCAGTACTAAAGtcgagttttgtttttatttgtatgatCAGTAAGCCAATTAGTTATTCAGTGTTCA----TGAGGGCCTACTGTATACCCAACTCTATGCTAGGTTCTGGGACTAACTCAAAAGGTAAAAGCTAGACCTTCAAGGCATTCATCTTTTAGGGCAGAAACATGAAACAGAAACC--AAACAGCAGGCACCCTGTCAGGTGACGGTACTCAGCGGAATCATTTGTGGTCTCCATTCCCCCTTTCAAGGTACAGATGTAAGGCACATGATATTTTGAGCCACCACTGCTGGTGGCAGCTACCCTGCGGTGACTGCACTCTACTGGAGTTGTCcgctcaccacaagtcagtgtgtGCATTCCTAAACCTATTAGACTAGTTCTTCCCATTCTTATtacataatttaattaaaattgtttaaagTAATGAAATATA-GTAC-AAAAAGAAATTGTTTCTATCAGATCTAAGTTGAATGCATGAGACAGGTATTAAAAG

a score=73210
s chr3            97283436 2310 + 160039680 aaacaaaaTAAAACAAAAACAAAACAAACAA--AAGAAT----------CAGGGTTCTCATG-------------------------GGAAGTCTTGAACCCTAAAGACAAAGCTTT-GAGCCACAACAAAATCCCAAGGGAAGTTTTAAGCTAAAATAAAGGCTCCAAGACTGGTTTCAC-GTTTTGTATGACTGCTGTTCTAACTAACTTGCTTAACTAAAACCACTGATTCTTATTTGCATTGGGTTTGAGTTATTTGAGTTGAGTATTATTGAGTTGGATTT----AGGGGCTTCTGCACTTAGTAACATGTGTTAAGAACTACGATGTGGGGGCGCCCAGGCAGACATGCTGCTCTTTTAGGGAAGGAGAAGGCTCAGA---GTTTGAGGGAAGGGAGA---GTCCTGTACTGGGTGCT-GAGGAATGACACAGCAG--CCTTCAGGAGATTAAGGAAAGGGCGAATCAG----------------------AGACACATAATGAACAGCTTTCTAAATTCTGTAAATGAATGGAGAGGCCAG-CAGCATCAGTGCCACCTCTATTCCG---TAACTGCCATGGTTCTAAAGCAAGTCccctatgcctcagggtcgccatttgaaagaggaggaaacgaggggtccccaccttg-gtgggctcttgggaagattatgtgagAGGATCTCAAAATAA---------AATGAAAACACGTGCAAAATTCCCTCCAGGCTCTCCAGGAGCCAGGGTG-------GTGGAGGATGCTTCTGAGGATAACAGCATTTTCTCACTAACCTTCTGAAATCACTTCCCAAGAGCA-TAAGGAGCAGAATGCTGAGGGAAGGGACCACGGAGACTGTAAGACCTGGGAGCTCGGAGCCATGCCAGATCCCGAGGCTGGCATGCCGAATGGGAAAGCTGGCACAGATAAC-CCCAGCCCCGAGCGATGCGGCTCACCAC-----CGTTCCCAACCAGCTTACTTA-TTCCTCTAGCAATGCT-----------------------------AGGCATGGGGAC----------agaagttaagtaccacactccaggttatgcagatgatggacagagagcaggaactggattcaggcttcctggtggcatattgcacagtagcctactaccccagactgccccTGCCGTGGCTTTCCACTTCACAAACCCTGGGCTGTTGGGCTTCCCATTTTTACTCATTTGTTAAGACTGTGC-CAGGGCTGGATGCTACCGTTAATGGCTAAAATGAAGGTTGGAGATAATCGGGGATTTCAATTATCCTGCCTATCTCTGACCTCCATTACCAAGGATAATCAGAAGCGAGCTCTAGCAATTTTCTGAAA-CTTTCattaattttaaataaatttataCAATGTCATCCACCACCACCACCCCCTTTACCCACATTAAAATGTCCTCATCTTTTTGGTTCCTCTTTATAGGCGAGTCCCTTGCACGTCTTTGAGAGGGTCTGTTGTTTTTCTCTGGATCCTTTATAATT-CTGCTTTGTTTTGTTTGAAATGAAAGGACCGAGTGCTGAATTCTGATTTTAAGGTGAAGTCATAACATCAATGTATATCATTAAAATGTTTTATTGTAATTACAGAAATAGTCAATGCCAAATTATGTGCACTATATTATTTTCTGCATTCTTCTTTATTCCATTCTCAAAGTTAATACAGCCTATTATATCTCATTCATTCTTCTGACTgctgccgcacggcgagcagatgtctccattgagcaatccacaatgaatctgagatctttttcctgagcacttacaagtagagtaattcagagcccatcagcgaatatgagctgcttcaattgttcctaccagtgtacattagcttgcacttgtctacaTAAGATTtcaaagaatcatagatattaaagatggaaggggccagtgagtttatcaagccttccaactcTGCCTGTAAAACCAAGCAAAGGAAGTAATTTTATCACTTTATACTGCTTTGTTGATGCTTATTAATAATAATTACATTAAATGGTAACAGCATGTGACCTCTTTCATCCTAAAGTCA-TTGACATTTTTTGTTTGTTGCttatttgcttgtaactaggggtctcactctgtagccgaggatggcttggtacttgttatatagcccaggttggcttcaagttcatagcaattcccctgcctcagcctccaaatgctagtaatacaggtaATACATGACTGGCTTAAAATACTTCCTTTCTCTAAAAGAGAAATGAAGCACAGACATCCAGGTTATCATGCCCAAACCCAAGCCAACCAAGGCAAAAATTCAATTTGGTTGAACTCAATAAGCAATTTTGAATAGCACTTGCTAGTCAAGGCTACCATTTTGTGGCTTTGTGG-----TCTGTGGGATGCAT--------GGAACCTAAACTCCTGC-----TGTGTttt
s HiC_scaffold_1 106962978 2171 - 233722169 AAAGaaatcaagacaaaaacaaaacaaaaaatcaagagTGCCTCTGAGGCATGGCTCCCATGTAAAATAGGATGCACACTTCTATTGGGAGGCCCCAAATTCCAAAGAGAAGGCCTTAGTGCTacataaaaaacatgagcaatgGTTTAAGTTAAACTAAAGGCTGAAGGAATGATTCCATTACTTTGTATCATTCCAAGT-TAACCAACTTGTTCAACTAAATC--------------------------------------------ACTATTGA-TTGAATTTGGAAAGGAATTTCTACTGTTATTAACAT------AAAAATACGATA----AGCACTAAAACA--CAAGATGACCACT--GCAGAAGAGAGGTCTGGGAACAGCCTGTATGGTGGGAGATGAGTGCTATACTGAGTGTTAGAGGAGC----CAGGAGTTCCTACAGAACA-----GAAAAGGCCAGTCAGTTCCCAGGGCAGCAATCAGTATACTCACATAACT--CAATTTTCTAAACCTTATGTATCAACCCGGAGGCAAGATAGCACT--------CTTTATTCTACTTTGACTGT-ATA-TTCTTAAACAAGTtgtccatgcctcagtttctgcaTTTGGAAGATGAGGATAATAGCTATGTTCACCTCACTTGGGCTACCATGAAGATGACATGAGATGCCATCAAAATAatcatgtgctaataaaaatgaatgaaaaattacttTAAGGTTTTCCAGGAGCAAGAGAGTAGTAACGCTGAGGATGATTCTAGAGATgaaagaaatgtttcatttttcctctaaaatctccTGCCAAGAACAATAGGAAGCAGGAGACGGAGGAGAAGGAAGGTGGGG--TGTGGGTTCCCTGATGCTCTAGTTATGTCAGCTTGTGAGGCTTGAAGGCCAAGTGG-AAAGCAGGCACTCTTCATGACCACCACTGGACATAGTATATCATAACTTAACCACTGCCAAAGAGCTCATTTAGTTCTTCCAACAATTTTTCCATGTATTATCATTATGTCCATTCTGCAGATGTGAGAACTGAGGGTCACAGAAGTTAAGCAGATCACTCAAGATGGTACTGATGATGAACAGGGAGCAGGACTAGAACTCAG---------------------------------ATCTAAGGCTGCCTTTCTCATG----------------ACCTCAGACTGTTGTGC--CTTGTATCTATTCATTTGTTAAAACTTTTCATAGGACAGGATGATGGGACTAATGGCTAAAGTGAGAGCTGGAGATTATCAGGGATTTCAATTATCCTCCCTATCT--GACATCCATTACCAAGGATAATCAGAAGCTAGCTTTAGCAATTTTCTGAAAACTTTCACTAATTTTAAATAAGTTTATATGACGTCATTT-----CTCCCCCTGCTTTACCCAAATTAAAATATCCttgtcttttcagtt----tttatgagCAAAACCCTTGCATGTCTTTGAGACTGTCTGCTGTTTTTCTCTACATCCTTTgttatttctgctttgttttcggTGAAATAAAGGGATTCAATGTAGAATTCTAATTCTAAGGTGAAGTCATAACATCAATGtatatcattaaaatgttttattgcaATTACAGAAATAGTCAATGCCAAATTATGTGTGCTATATTATTTTCTGCATTATTCTTTATTCCATTCTGAAAGTTAATACAGTCTATTATATCTCATTCATTCTTCCGACTGCTGCTGCACAGCAAGCAGATGTCTCCATTGAGCAATCCACAATGAATCTGAGATCTTTTTCCTGAGCACTTACAAGTAGAGTAATTCAGAGCCCATCAGAGAGTATGAGCTGTTTCAATTGTTCCTTCCAGTGTACATTAGCTTGCACTTGTctacataaaatttcaaagaatcaTAGATATTACAGATGGAAAAGACCAGT-CGTTTATCAAGCCTTCCTGCTTTtccagcaaaagcaagcaaaagaatgaattctaacagttcatattattttaatgatgcttattaataataattacaattACTGCTTATAGTATGTAATCTCTTTCATCCTAAAATCAGTTAAga----------------cacttgtttttaaaaagg------------------------------------------------------------------agtgaTTC---------------------------------------------------------------TTTTCCAAAAGAGAAC--AGGCATTGACAATAATGTTACCATACCCAGAGCCAATCTAATGAAGCCAACAATACAATTCATTTGAGTGCAATAAACAGCCCTGAGCATCAATCACTCGTAAAG---------CAGAGACTCTGTTGGTAGCTCTGAGGGATGCATAGGTGAAGAGAACCTAAACATTTGCCTTCTTGTGTTTT

a score=36613
s chr3            97287551 1448 + 160039680 tggtttctaattaattgtgtgatgatccgtcttcc--tccaccaggatgaacacatcttaagagtaggggttcaagctttactcatctttaaatcctcaccaAATCATGCTCACTTTTGATTGCCTGACACA--ATAGATGTCC-------TTGTTAAATCATTTCTTCGGATCTCAGAGACCTTATTTTTGATATGTCTAAGTTATTTTTAAAA---TTGTCTGTAGCCGTTCCAGAAGTGGCCATTGCCTATTGCATCACAGGACTCGGATTCAGGTGCGCACTCT---AGCTTCATGTCTACCACAGCCCTGCATTCAGTCTGCACACATCTCTGGGAGTGACCTG---AACTAGCACCTTTAATAAGACCTGAACCCCGACTCAGTTATATGGGTCTCTGGAAA-CAtctgaaggcagactgcctggatttaaaagacatagactgcagctgtgactatcatttactagttgtgggaccttgggcaagttacattctcaggatctcagcgttctcagctatgagatggaaatattaataacaGCAGTGTATGAAAAAGTTAAGCTTAGCTCTTTGAATAATTATATACTTTCCCTCTTGGGGCTTTTGTTGTTGTTACGGGAGTGGGTGGGGGATGGGGGgagggtcaaacttagagctttgtatatgttagacaaatgttctatccctaggctacatccccagcAACATTGTTACTGTTTTCTCAT-TCACAAAGTAGAAACA------CAAGTCTCTCGGGGCTGCTCCAAGGAGCCAATGATGTAACAAGTGAAATTTTCCTCACCATATTATCTCATCAACAT---TTCCTTCCTTTCTGTGTATTAGAGTAATTgctacaatcaaacgaggacctagta-atgccaggtaatatattactcactttaaagatatggtcccgtctaatttaattcatattacaaggtattgaagtaattagcatggtccatat-ttgacaggggagcaaagtgagTTGGAGTGAGAATGAACAGTCCACGGCTGTATCATATCACCGGTTCAGTTCAGGTTGTTC--AGAACTTCAGATAAAAAGGACCAAGAATAGACACGGGAAGCCTAGGGGAAAACACACAGGAAGAACATCCAGGTCCAAACTCCCTACGGAGTTTAATATTTCTCTTTGTCTCC---CTGGTCTTCAATTCCAGGATTCTGCTTGCTTTGTAAGCTAGCCTCTGGGATCTGTGTCAACATATGTTCATCCTCACCATTCGCTTACTCTTGTTGTCTAACAAGTGTACAACATGATAT--------CTAAGAGCTAGCTCTAACTCTCTTCCATCTCCCCATTTCTTTCTTTGTTATGAATTTGCTATTCGTCC-----CATGGCTTTCTTATCACAGTTATACTAATTATCACCGATGAACCATTTTAATTTTTAATAACCTGGTTATTCTTAACT---TAGACTTTCATAATGGGCTtatattagatatgtcaaata
s HiC_scaffold_1 106967275 1337 - 233722169 TGCTTTATAATTAATTGTGCTATCATCTGTCTCCAGGTGGGCCAGGATGACAGCATCTTGAAGGCAGAGATTCAAACCACACTTATCTTGGATATTCTACAATGCtaagttta-ttttcattgttgGACACACAATAGATATTCATTGCATTTGTAAAACCACTTCATCAGATCTCAGCGATCTTATTtt-gacatattta---tattttaaaaaattttgtctgAACCCTTT--GGAAAT---TTTTCCCTGTTTAATTATGGTACTCAGGTTCAGAAGCAAGATCTTTTAGAAGTGTGCCTACCACTACCCTTCATCCAAGCAGCATGCACCACTGGTACTGAACTGGAGAAGTAATGCTCTTAACAAGACCTAAACCTTCATTTCATCATTTATGACTTTGGAAAACCTTTGGAGTCAGACTA----AGCCTAACACACTTATACTAACCATATGTTTGTCATTTAC-AGTTGTTCCATTCTGAGCAAGTTATACCATCTAAATTTCAGTGTCCTCAGTTACCAGATAAAGATAGTAAGTGCACC-----------------------------------------TACTTC------------------------------AGTTTaaaagacacaatgaaagcatttGGCTCAGTCCTTGGCACATA----GCAAATCCTCAATTATTAG----------------------TATTATATTCTTatctcataaaatgaaaataataatataaatctCTCAGGACTGTTATATGGGAAAAATGACATAATGTGTGAAATTTTACACAGCACATtattttgtcaaattattttccttccttcttttgtgcCAGAATAATTGCTACAATTGAGTAAAGAACTATTATATATCAGGCAATGTATTAATCACT---------------------ATTTAATTTTTGTAACAAGATATTGAAATAAT---AATTATCCATATCTtaatagatgagaaaattgagttGGGA--AGAATAACCATTTCAGGGTCATAT------ATTGGTTCAGTTCAGACTGTTCCAGAAGCTACAAGTAAGAAAGATCAAGAGGAGACTAGag-------gagaaaaacaca-----agaaagtcCAAACAAAAATTCCCTACAGAGTTTAGTGTTCCTATTTCTCCTCATTCTGACCCCCAATTC-AGGATTATGCTTCCTCTGTTAACTAGCTTCTGAGGCCCACGTCAATACATGCTCCCCCTCACTATTCCCCTACTCTTG-GGTTTATGAAATGTATGAAATAATATTAGCCACCTAAAGAGCTGACTCTAATATTCTtgc--ctctaaatttcttttttggttataaATTTAACATCCCCTCCCCCACAAGATCTTCTAATCTTAGTTATACTAATTATCACCCATgaactattttagtttttaataaacTGGTTATCCTTCACTTCCTAGGTTTCCGTAATGGTC-----CTAGATATGTCAAaca

a score=259612
s chr3            97291032 8732 + 160039680 [encoded data, 9383 characters]
s HiC_scaffold_1 106971071 8360 - 233722169 [encoded data, 9383 characters]

a score=10969
s chr3            97300261 527 + 160039680 aaataCATTTTaaaatgaggctcagagcatctgtgtggtgcctgag-----agcagaatagag-cagaaacagaactaaaaccgagccctttgtgactccaaagcccagcacccccgccacactgtgctctcttgCTGGAGGAGCCCTCGGTCTCCAGGGCGCCTCATAATCAGGCATGCCAGACCACCTGGCTGCCCAAACAAGTGCCATGTTTCT----TCCTGGGCCATGGGTTTGGATCCTTTCACGTTAGTCCAGGGGAGCGTCTAACCTCTCCCTAACAGGCTACTGAGTCACCCTGTGCTTCTGAGCCGTGGTGACTCACAGCATACAATGAGGCCTCCCGGACAGTAATTGCATAAAGGGTCACCATAACCTTCAGTGACCAGCCACAGACTGCCCTGTAATGGAGAAAGACATTGGAGACCAGGAAAACTGTCTGTCCATTTTTAAACAACAACAACAAAAAATGTTGTTTCAAAAAAATTTTTTAAAAGTAAAAACACCTGCAAAAGTGTGGATGGCGGTAATGACA
s HiC_scaffold_1 106979453 470 - 233722169 aagtaattttgaaaatgaggC-CAGAG-AGAGGTTAAGCATCTGAGGCTACAGCAAGGTAGAGGTTGGGGCTGAAATCAGACAGATCTCTGTGTGA-TCTGAAGT---GCTTATCTACCACATTATGCCCACTCA----AGTAGTCT-------------AGCTTC-------GGCATGACACTCCAC------------ACAAGTGTACTGTTTCTGTACCCCCAGGGGTTGGGTTTGAAACCTTTCTTTTTTAACCAGGAGAACTTCTGAACTCTCTTTAACAGGCTACTGACTCACCACCCACTTTTAAGTGATAATGACTTACTGTACACAATGAGGCCTTCTAGACAATAACTTCAAAAAGGGTCACCTTAACCTTTAATGACGACTTACAGATTGCTAGACATTGGAAGAAAGCGCCTAAGTCCAAGAAAGCTTCCCttcc----ttaaata--------taaaaatagattttcaaaatga-----gaaaagcaaac-------tAAATGTGTTGAT-ACGATGATGATA

a score=28342
s chr3            97304217 1602 + 160039680 aaAAGAAAATGTTCATAAGAACACAAACAAGTAAGCTAAAAA-TATGTTTTAAGCAGAGATGCAGACAACTAAGCTCCAGTGAGAAGAAGCAGGTAGAAATA--------------------------------CTTCCTTCTGCATAAATGTACACAGCTTCTCCATTCTTC----ATCAATTCCAAAGACTCAGAACAGCCTCACTCAGGATAAACTGAGTAAGGAACT---GTGCTGACCAACATATTCAATGCCC-AAGAGAATATGTTATTTTTTTCTCCTAAATAGTTTTTATCTTTCTGTCTTTCTGACCAACTAACTCTTGAT--AATTCGAATTCCTACCAAAGATCTATAGAAGGCTTTCAAAAG-CCCTGATAAAAACTTTGTGTGTATGTGTGTgtgtgtagagatggcactgacttccagaggtcctgagttcaattcccagtaaccacatggtggctcacaaccatctgtaatgggacccagtggtgccctcttctggtgtgtctgaagacagctacagtgtactcacatacataaaataaataattttttttaaaggaaaaaaCCTTAAAGGACAGAGATACTTGCTCATGTCCTGTGAGGTTGATTAATGCAGGTAATGCTACTTGGACAGGCTAACTAATAGTAATTTGGAGTTTGCAAATTTCCTCATACGCTAGGTGTTCTTTAAGGAAGAGCAGCCTTGATGGGACGTTGTGAAGTAGTCCAAACATGA--GTCTCCTAGCATGTT-ATTATAACCAAGGTAAATGTACAGTAAATAATACAGTAGGCTTTTT----GGTCAGAAAAGCCATTTTGTTCTTTTCCTCCTCCT-------------GTGAAGGGAACTGTTTTCCA---CCCTGGGACAGGCTTG-----CAATATTAAGGGAGGTAAGGCGA-CACAGTCTAGAACTCACCACCTTCACTATGGACTGGGTTTGTAATGTGCTTTCCCTGGGAACTGCTTCTT--TGTAGCTCACAGCTCAGCAGAGCAGAAAGGCGGGCCATAGCTACCAGAGGGAGCAACTGGTTTTGGTA---------CCAGCT---------------AAGA-----GGAGGCACAATAAACT---------------TCAGCAGTTCTTGGAGACAGCCAGAAAAAAAGACTACCTCTGTTGGTTGATCTTGGCC------------CTGAATGTGAGCTTACAGCAGCTTTG---CATGGGCAAAAGGACTGAGGTATGACCTGGGCCACG-AGGGGCTCTCAGGGCTATTTGGGA------------AACAGTTACTCAGGTCACTAGCTACGACTAA----TCTACAGCTAAGTCAAAGTCCTGAGTTCAACCTAAAATCATTCGGAGGGAGATGGGTACTTATAGGAGGATTTCGGACCAGCCTGGCTCAAGGGTTCATGTTGTTCTGCCCTACACAGCTGCCAGGAGATAAAAGCTCCCAAAATATTCTAGCTGTGTTCCTAGTTCCTCAGGACCTGAGCTTACTTGACCTCAGGACACCCAAAATGGAAATCATGCAATTATCTCTGTGAAACACAGTTTAATAAGGCTAGAAA-------------AGGGACTGAAGCCAGGCAAAGGTAATTTATCTTTTATATCACATCTTTTGCCCAGCAATGAAATGAATATCTTTCATAGAGATGAAAGATACATTAAAAGTTGAACTGAAAGCATTG-TTTTGAATTTAGTTAGGTAAA-TGCTTGTCA
s HiC_scaffold_1 106982810 1587 - 233722169 AAAAAAAAGTGTTTCAGGGAATACGA----GTAAcctaaaaaatatgtattaacaAGTGAGTCAAATTACTGAGCTCCAGTGAGAGGTGGCAGTTAAAAATAGACCATTATTGTAGTGAGGAATAGAAATTCCCTCGCCTTCAGAGTAGATAAGCACAActtcctcaatttttttaaataaactacaataaatcagaaaaata-caCTCAT-ATAAG-TGATTGGCCAATTCTAGAATTGGTCAACTGACTAAATGCCCCAAGATCATTacagatcttttttttaaaagcagttatTAGTTTT-GATTTATCTGGGAAACT---TCTTGATTGAATTCTAACATTTACCAAAGACCTATAAAATGCCTTTAAAGGATCTTGATTAA----TTG-----------------ATAAGGATAAT---------CAAAGGTATTTGCTTAAGTTCGCATGTATT------TGactcata----tttataatta-------------------------------------------------ttatatagatGGTCTAAATAATATATGTTAA------------------------------GTTTGTGCTATATAAATTTCATTAAGAGATACGATATATCTTTGG-AAGCACACTCACAAC-------------CAA---TCCTCTTGGGC--------------AGAAAACCAGCCTTGATCATGTCTTATTACATACCCCACATATAAAGGTTTTAGAGTCTGTTGACTATGAACAAAGTAAA----CACCTAATAATATGCCTGGCATTTCAGCAGGAcagaaaagacatttagtcctttcccctctccttcctaGTCAGGATGTGAAAGGGA--GCTTAGAAAATCCTTAGAAAAGTCTTAGGAATTAATGTTAACCAGGGCAAGGAGGGCACAAACTGGAACACCATGTATTTGCTGTGGGCTGTGTTTGTAATACCCCTTCT-TGAGATTTGTTTCTGCATGAAGCTTGCAGCTCATCAGAGCAGAAAGAGGCGGCAGAGCTACCAT-GGGAGCAACTGGCTTTGGTAAACAATGAGCCAACTTCTTCCCCAAGGGAGAAGATCAGCGGAGGTATAATAAGCTATGGAGAGAAACTCTCCAACAGTTTATAGAGGCAGCCAGGAAAGA-GACGACCTCTCCTGACTGACCTTGGCTGTTGGAGCGGCGCTGAACATGAGTGCACCCCAGCCTTGGTTAATGAGCAGAAGGAGTTAGGCATGACCTGGGGCACTTAGGGATTTTCAGAGCTGCTTAGAAGTTTGCGTAAGCAACAGCTACATAGGCCACTAACCACTGCTAAATAATTTTCTGCTCAAACTA-GACTTGGATTCATTCTCAACAGGTTATGAGGA------GCACTTAGCAAAAGACCCCTTGCTAGCCAGGCTTCAGAGTTTTAGTTGCTCTGCCCAACAGAGCTTGAAGGAGATAACTGTTCAGAAACTATCAGAGTTGTATTTGTAGTTCATGTGGACCTGAGATTGTTTGACTGCCGAACCCCTGAAATAAAAATAGTGTAATTATCTTTGCTAAAgacaatttaataataataataataacaataatagtaaaCACTGAAGTCAGAAgtaggaaatttatttt---tgtcacat-ttttgCCTAGTCATGGAATGTATACCTTTCATAAAGATGAAAGATGCCTTAAATGCTGAATAGAAggtacaatttttaaattcagttcaATAAGTTGCTTGCTA

a score=58649
s chr3            97307878 2903 + 160039680 gagaagaggggaaggatgaagagTATG----GCTTACA--------TTTGTGATCCAG-------------AAACTT----CTTTGCATTCCAGTTCAGGAAAGGAGGTATCTGGCAGATTGTTAGAGCTTTTATTATTTCCTTT---------TACCTCCAGGTTCCCCAGAGATGGGCTGGACTCTGTGTG--GGTCAGGGGTAGACCATGACACCCCAACTTCCCGTTCCTGAGGGTTAGGAAAAATCTATCCTCAATCCTGCCTTCCACCTGCTCCTTGCAGTTTCAGGTGGTTAGAGA--------GTGTGATCGAATGGGCCAGACAG--ATGGGCTCAGAGCCTAAGCTGAGTGCAACTCTAAATCTGGTCCTGGCACTGATTAGATTGTGACCCTGCTCTGGTCCCTCCCTTGTCACAGCTGGGTGCATTT-----ATCCTTCCTTCCCCAGTTC---------CACTTTGTGCCCCTGGGAAGTCCTGGCTGTTCCACTGGCAGACATCTTCCAGCCTGAGAGACTCTCATGGAAGATTCATTTCTTGGGGCTTAGAGCTCTGCCAAGGAGAGGTGACATATTAAGCCAGTGACACTATGGCAATTTAATTCCGTGGACT----------TAGAGCTGAGAGTCACCTAAAGTCTATAGCCCCATTATTCCTGCGTCTGAGCCCATCTTTTTCTTTTTCCACCAACAGAGGGACATGCGTCCCTGCCCTGGTCCCAGCAGCTCTTTTTCTCCCTGTACTCTGGATCCCACTTC--------CCCTCTCCTCAGGGGCCTCTGCCTCTCTCCCACATTAGCATCCTT-------CTTGGCTTCTCTCCATGGGTATTTAAATGAGCTCAAGTCTTTCTCT-TCTTAA--TTCAGTACAATACCAGGCCTTCTGGGGCCTTGCACCC-TCTGCAGAGACTGATTGCCTCACCTCTCTCCTCT--------GCCAAACTTCTTATAAAGAATTACTTATGAACTCTGATAGACAGATGGGAGAACTTGTAGTATTTAAAGAAGACATATGTTTATTGGA----------------AAGGA---------AAGGCCGGACAGCCCAGAAGTTGGTTGAGGTTTGGAAGGAAAAAAAGTGAAATGTTCCTGAAGACAGACCTCCTTGCTTCATTAACGGTACCTAAAAAAAATCACCGTGAACCCCTCATGCCATACGGTCTGTCCAGCAGGAGGGATTTGGGTCCCTGTTGTGAGTAAGCTCACTAC-CGTGGAGGACACAGTCAAGGACCTAGTGTA---------TACCCAT-----CTCCAAGCTGTCCCAG----TATCAACAGGGGCCAGGGGATGACTAAGGCT-----------------TAGGGTTCTCAGATCCTGAGAATCCCCATCCTTTGGGCACATATCCACAATGTCCATTCTCAGAGGACTTCCCAGCAAGCACTCTTAAAGCATCCTTCATgga-------ctgtgggcatag----ctcagttggtagggtgcttgcctcgttttcagga----agccttgggt------------------------ttgattcccag-------------------------------------------gactgattaagt----------ggtggcccagc--------------------------cctgta-----atcaatcccagcactggg---gaaatggagtcaggagcaggaggagttcaaagtcatcttcgg-----------ttaaag--tttgaagctagcct------gagctgc--------------atgagattctgtct-------------------------------------ATAAACTACAAGCATTGTgccctgccag-------------------------------------------------------tgattctggtgcatgatagagtttgagacctacCAGGGTAGGCAGCAAGGATGGCTGTGGCTGCAGCTCAGGCTACTGGGGCATTTGGCACTTGCATTTGGTTGTGATCTGTGATCGGTGAGGTAGAACAAAGG-----CAAGAGGCTGGGCGACCCGGAGAGTAAACCAG------TAC---AAAGAGGCTGGAAGGCACTTGCTACCTGAAGGGTAAAGGGAGGGG-TGCTGCGGGGTA----GAGATGGGGCGTGGGAA---------------------GCACAGACATCCTGAAAAGCATCGT--------CAGGACGCTCGGAGTCCCAGCTATCCTCCGGGGA-ATCTAAAACCGT---GTCTCCCCCTTCCCATACACTTTTAGTTCTTTTCCCTCCCCTCCTCTTACAGACTTTCACCCCCCCGCCCCTCCACCCCCACCCCTCCATCTCCAGAGGTGAGGCTCACCCC-ATCCTTTGATCTCCCCAGCTCGGATCCAGGATGGCATTGCTTTCC-CTGCCTCCTCCCTCAGTGTCTCCTCCT-------CAGAATCCGCCCCCTCACCACCGCGACGACGGAGGAGAAATTATACATCACTCCTTTGAGAAACGGTTCCTAGAGAGGTTACATGATTTGAACAAGTACCTACTCAAAACATCAGGGGAGCTACACCTGCCTTTCACATTCTGACAGTGCTTGCCAGGAATTCATTCAGCAGGAATCAGAGGATGGCTTTTTTTGGAGCAGGCTTTAT--------------GTGAAGTTACACGGGGACCCAGTGGAAGGGAAGGCTCTCGGCATGGTGTGCCCGGAAGCAGCCCCCCCGGTGGGACGTCCCTTCCAAAGCCCAGAGGAATCCTTTCAGGTGGTGCAGCTCTGTTTTCCTGTGGGATCTCCTCTGAAGCCTGAGCCTTCACTGGCACCTGTGGG--CTGATATTGCTAACACCCTATTCCCTGGAGCGACATCTCCCTCTGTGGGATGGGGGAGGGCATGAATTCAC----TTGCAGGAAGCTTGCTTTTCTCTCTTAGAGGCTTTCTGTGAGAAGGCCCAGGTTTTCAAACTGACCTCTAAGATTAGT--------------------GTTTGCTCACTTTCCTGGGCTGCCTGGACCTGTAAACTGGTCACATCAGAACCGTGCCACAGAGTC-CTGAGAGGGCCAA------GGGCGAAGTGCATTGTGGGTTCTACCAAAGT-----------AAACTCCATGCTACCACTAGAGAAATATCTGGATTGGTGTCCCGGCCCCACTGTCCTCTTTGCACATCACCAGACCTTATTAAATGCTGTTAA-GGAGTTCTCTCAAAATACAATCTTTA---TTAATGGCAGTGCGGTGTTTTGGGGTATAGAGGATATTCACTTCGATCCGCCACCCCTGTTCACTTCCTTGGGTTTCTTTCAGCCTCT
s HiC_scaffold_1 106986384 3299 - 233722169 gagaaaaggaggaagacgATGAGAATACTTCATTTACAGAGTTCTTCTCATGATTCAGGTTCTGATACGATATACTTAACACTCTGCACGCTCATTGAGTTGAAGAGGCATTTGACAAATTGTTACTGctattattatttctatccttgtCAAGTGTTTCTGAGAGTCCCAGAGATGGGCTGGGC-CTGTGTGAAGGTC-TGGATGAACCACAGCATTCCTAGGCTCTGTTCT----------GAAGAAGATATTCTTAATCCT----TCTGCCTGTTCCTTACAATGT-AGATGATTAGAGAATAAATGAGTGTGAATGGGTGGATCAGATGACTATTGGCTT------TAGACAGAGAGAGCTTCAGTGGCTGCCTCCAAAACTATCTGCTCTATGACCTTGCTCTAGTCTTCACATTGTCACGGTTTATCCCATTTTCTAAATCCTGTCTTGTAGAGCAAGGCAATAGGTATTTGAGGCCAGTGGGAAGCCTTCACTTCTTCCCTGGCATGCCTCCCATATGGAGACAGTCTCTCATGAAAGATTCACTTCTTCAGG-TTATTGCTCTGCCAAGGAGAGGTGACATGCTAAACCAGCAGCACCATGGCAATTTAATTTCATGGAATCACAAGATGTTAGAGCTAGGAGTTACTTAAAGTCTAAAGCCTCAGTATTCCTATGTCTAAACCTActctttcctttttccatctACAATGAGAAATGTATCCCTGTTCCTGCCTAAGCTCATCTTTTCT--CTTGTGGCCTGTGGTCCTTTTCAGAGACCTCCTTCTGTCCATGAGTC----CTTCTTTCCTACACTATCACCCCTTCCCTGCCCTGACTGCTCTCCATGAATACTTAAATAAGCTCAAGTGTCTCtccatcttaaaataaaatttaaaaaaaagatttctggGGTCTCATACCCCTCTGCAGCTACTG----CCtcactttccttctctccttcttagCCAAACTTCATGTAAA-AATTATCTATAAACTTTGAGGCACAAATAGGAGGGCCCTGATTGTTGGAGGAAGGCATATATTTATTGGGGGTCTGGGTGAGCCTGAAGGAGGCTGTGTTAAGAGCTAGTAACACAGACATTGGTAGAGAAATGGAAGAGAGTAACGTGGCAAGTTCCTGTGAACAAATTGTCT-ACATCATAAATTGTACT----GAAAATCAACACTAATTCTTCATGT---------TGACCACTATATTAGATT-GGATGTCTGTTCTGAGTGTGCTAGCTAGGTACTAGGAACATAGTCCAGTATACATTCTGCCTTTGAATTACTCATGGATTCATTTAGATATTCCTGAGGTTAGTAACACAGGATAGTGCAGAATTAAGGCTGAATGAATGACGTAGTTTAGTATCCACAGACGATAAGCATCGACatcatttggaattttattatcaATATAAACTATCAGGCCTcttctcatcactctgtttaaatgtattttgttgggagccacagccccgagcccggtcgcctcacttggc-ggacgtgaggcctgtagtaaagagtgaagcctgaggtagattgcccctcccatcgagcacgttagtttcctgcttaccgcgtaagcaacccgctcaacaatatagtctgcctggcaactgatgatgttagccaatcagcttgccttgcttactttaacatgattggacactgtacccgtatatataccggtgccacccctgggcggaagaagaagcccgga--agtagaagcccagaaggagccgcggagagcggaccggtagaggcttcggagcgaagcccggaaggagccgcggggagcggaccagaggaggcttcggctgggagcgatcccagggcaggctgtatggagaaggaaaataaaaagaaaaggttgtccactgccagactttgtcgtgtgtccttcctgccggccgggagcggacatcgacagtatTTCACACAATTCTGGTGC-TTATAGAATTTAAGAATCACTGGTGCAAGCAGTAGATAACACTAAGGTGAAAAGTCAGATTCATAGGCTATTTGGCACTTGCATTTGATTCTGATC-------AATGAGATAGAACAAAGGATTGACAGTAATCTAGA-------AAGGGTAGACTAGATTATCTACCTTACAGAGGCTGGAATACATATGCTGTAGGAAAGGTAGAGGGAGGGGATACTGTGGGGTAAAAGGAGGGGAAGAGTGGGGACCCATGGTAGGAGCCTGGCTAGTACAATGTCCCTGCAGAGGATGGTGGTGGAACCAGGAAGCTGTAATCACCAGCTATCATCCGGATAGATACAAAACTCTTCTGCTTCTCCCTTCc-----acttctaatttctttctctct--tgctttcaTAGGTATTC-TTTTTCTGCTTGTC---------------ATCTTCAGAAGTGAAGATCACCTTTCTCCTTTGATCTCTGTGGCTGCGATGCAGAATATTTTtacctgcctcctcctcctccatcagtgcttcctccttcctcctctgaaTCCAC----TCACCACTGCTGCA---GATGAGAAATTAGAAACCAGTCTTTTGAAAAATTGTTCCTAGAGAAGCTACATCATTTGAACAAGTTTCTATTCAAAGCGCCAGTGGAGCTACACCTGCCTCTTAAATTCTGACAGCGTATACCAGGGATTCATTCAGCATGAATCAGAGGATGG---TTTTTGGAACCGGCTTTCTACAGTGCCTCAATAGTTAAGCTACACAGGGACCCTGCAGAAGG-------CTCAGTGTGGTATGGTTGGACTCAGCTCTCT--GTGGGAAGTCCCTTCCAAAGCCCAAAGGAGTTCTTCAAGGCAGCAGAACCTTGTTGCCCAGTGGGATCTTCTCC--AGACAGAGCCTCCATATGTACCTGCAGGCTCTGATGTTTAGAGCATCCTCTTCCCCAAAAGGAAA-CTTGATGCATGGGATGGGGGGGGTGATGAATACACTAGATTACAAGA----TCCTTTTTCCTCTTAAAGG-TTGTTCTCAAAGGACCAAAGTGTTAAACCTGAGTTCTTCTATTTGCTGGCTGGATAATTATGTCTAATTTGTTTACGTCCTTTGGTTGCCCTGTCTTTAAAACAGG-CATAATAAAACCAACTCACAGAGTTACTGTGAGGACCAAATAAGGAGTAGAAGTGCATAATGAATTATTTATGAATCGTGTGGCCCCATATGACACGTTGTTACCATGGCATTCTCTGAATTGGCCTCCCTGTTTCTCTGGTCTCTTTCTACTCCATCAGGCCTTGTCCAATGTTGTGAACTGATTTTTtacaaaatgcaatttttaaattcaatggCAGGGTAGTATTTT---------AAGACCTTCATTCGTATTTCCTACTTCTGCT------------TTATCTTCAACCTCT

a score=15827
s chr3            97311879 503 + 160039680 GGGTATAATCATAAACAATCCTGCCTCAGTATCTAATGGATTCTCTCAGCAAGAGATTGTAAACCCAAGAGCCAGAGCCGCCTC-CAGCCTTCCTTTTTTCTCACCCCGCTCATGCCAGCGCTGAGAAACGGAGCAGA-----------------------------------------CCAG-----TAAATACTTC---------------------------------------------------------TTGAAGAATTGCACCCGCCCCTCTGACCAGGCGTGGAAGTAACTGTACCGAAGAAATTGGTCTGGTGCATTAACAACCGGTTCTAGCTGGCCCGCGTGCTGCTTCACAGCGCTGCTTTTCTCCTGTTTGCTCTTACTCAAGTCTCAAGTCTGTTTCTATAGCCTGCGGCTAAGCTGAACTCGGCAGTCAGCTCGGCTCCCACTCGCCTCATTCAGTTCGTGCCAACAGCAGTTTTCCTGGGGAATCTTTCCTTCCCTCCGCCC--CCACCGCCTGCGCCTGCGCTGAGCCGGATCTGGAAGGCAAACCCCTGGCTTTGTCATCATCCTGCAAGGCTGGAAAGGTCGCAGTGACT
s HiC_scaffold_1 106992301 590 - 233722169 GGGTATAATCTTATACAATTTTGT-TAATTATCTAATGTTTTCTCTCAACAAGATAGTGTAAGCCTAAGAGAAAGAGCTGCCTcgtattaatttccttttctgacAACTCTGATGACAGTGCTGAAAAACAGGGCAAAAGTTTTACAAAAAGTTGAGgaattggagctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcatgagttcgatccctgataccaataaaaaaaaaaaagagttgaggaATTGTGCCAGCCC-TCTGACTAGCAGTAGAAGTGGCTGTATAGAAGAAATCA------TGTATTATCAACCAGTTCTATGCAGTATATGTGCCTCTTCACGCT--TGTTTTCCTCCTGTTTGCTCTTATTCAAGTCT-------GTTTCTCTAGCCTGCGGCTAAGTTAAACATGACAACCAGCTCAGTTCCCACTGTGCACATTCAGTTTATGCCAATAGCAGTTTTCCT-GGGAATCCTTCCTCCATTAATGCCTGCCATTGCCTGTTCTTATTCTAAGAT-GATCTTTAGGATAAATCTTTGTCTGTATCACCATCTTGTACCTCTGGTAAGATCAGAATGATT

a score=27828
s chr3            97316425 3204 + 160039680 AGAGATAGGAAACGAGAATCACTCAAGCTGGGAAACCCTCAAAAGTGGTTAGACCTTAGGGAAGGTTGAAGAAAATGGAGAGGCCTCACAGAGTCAAGACTGTCAAAATGAGGGAGTTCAATCCCTGGAGAAATCACGAAACTGGGCGTAAAGGAACCGGAGAGTGAGTGGATGAAGATGTT-TGCCCTTTGTTCCTTTGG----------CGAGCTGTCAAGGGCGATGTATTCTGGCTGCCGATGTATAGATCATTCCATTGCATAGTGACACCCAC------GCTtgctaaggtctctaagctgctccctttgttagaacaagaactctccagtgggggtgacacttgtcacggcaaac---------actctgtcagctcgtgctgtagccagtgactgatggttggaac-aggagaaaacaaaacctcatttgttctgacttcaactgggaaaatctagtctgatttga-gcttgagagcccttcttaggatctggatgaggctggaccct-tgcccagtcccatgttccttacttccacc-tggtctgtc-------------tgggagcatccgctaataagtcactGCTT------------AGT--AGACACAGGGCACTGCCGAATCAATCAGG--CAGCCTCCTCCCCTGATAAGCACACAGTCACTCATAGTGCCCAGCAATAGTGACACAGACGGAAGACACACTGTGCTCTGGAATGGGGGTTCTTTACCACGTGAGCCCTGAAGTGTATCCAAGGACTGGCTAGAGTAGGTttctcaacctgtatgtccccaccccttgggggtcacatagcgaatatcctgcatatcatatattcacattacaatccacaacagtagcaaaactacagaaatgaagtagca------------atgagataattttataatcaggggtcattgtaccatgaggaactgttcatcaggaagggtgagaaccactgGGCAAAAGGCGAGGGAAGGGTTTGCAAAGCAGAGGGAAAAGAAAAAAAAAAAGAAAAAAACCTCAAATCTAGATGGATGGTACTAAG----GTACAGCTCCCAAATTGCA-------TAATGAAGCTAGGGGCAG-----CAGTGGCAGGAAGAGAGA--GGC----TTAATGTGACGAAGGTTATGAAA-GGCTCTTGACCTATTTCCAGGCTTGCACTGTATCACCAAGCAAAGGAAA--AATAATGAAGAGCTTTAAGTGGAAATTACACAATAAGACTTCAATTAAAAAAAAAAAAAGGAAAGAAAGAAAGCC----------------------GGGTGTCCAAG-GCAGAAAGGAGTCAAAGGGAAAGGCAGATGG-AAGGACCTAGCACTGGCTGACATCTCCAGTGTGGTGTAATG-TTAACACCTGCCATACTGGCATTAGGGCGAAATGGGCAAAATGTCTGCTCAGAGGCTTACCAGCTCGGACAAGTTCTCTCTAAGCttcaacttc-------------------------------atgactcgagtaggtatgaacaccaagcgagctaatgagtgaagggggtcctgttacgtt--------tTGCAATGGTTGGCCTGCTGGGTGTGCCGTCAGAATGATGTTCTCTGTGTGATCTGAATTGGAGCAACAGTTGTGGAAATGGGATAAC--AGATGAA-TCAAGATGCGTCGGAAGGGGAGCTGAAGGGCTGTGACATCTGCTTGAAGTGGGGATGAAA-ATGAAACAGCAGGGATTTCTGTTCTGG-CAGCGGATAAACGGAGGCTTTGCAAAGAGGAGGAGACAACTCCTGAATAGAAGCTGCCttccattcctgacctgttgagtttgaagagcccgggaggcaccaagagtagaactgccaggcaaggtctgtgcatgtgagcctgaagttccgagtctgaggtctgagcATGGCAGAGCAGGAAGAATGCGGGGGCGAGAACCCAGGCTGGGTGTCCTGAGCTCAGAAAGGACCGGGAGCCATGCTGAACCCAGGGAACAAGGCGAAGATAGGATGTGGCCTGCTTTCTCAGGGAACTCAGCCTTCTTAGAGAAAGCAGGTGATTA----GCTTATCAGAGCACAATAGATATCTTTACAACTGAAGCTATCCCGTGAGTCATAGAAATTAGGAGAACCTAGGATACAACAAGGACTCAGGAGGTCAGAT---AAATTG-AGATAGTCCGCAGGTTGCAAAAGGACAGGAATGAAAAGATGGACCAGCTGGGAAAGGGGAAAGGATGTCTTGCTTGCTGTTTTGGttttggttgtataagccaagatttctcactgtatagcccaggtttaccttgaacaggaaatcctcctgcctcagTGCTAGTGGAAAGCTCTTTTCTTTTTTCTTCGTCCCCCCCTTCTCTCTTTCTCTCTCAGACTCTTATCCCAAAGACAAAATAATCAACTGTAACATCATAGCCCTAGAAGGAGGCCGAA-------GGGCTGCGGTTCTGTCTCTCA---GGCCCTGTGGCTCAGAAC-CCTCAGAGTTCGTTGGGGTCCTTCTAATGGGAGGCCACCTTGGAGGGGGATTGGAAACTAAGCAGATGCAGCCTTACTACAACAGAGTGTCTACTTTCCTTTGCAAATTGGGACTGtgtgcaaacttc----cgaaagagagatagatggagagagagagagagagagagagagagacagagagacagagagagacggagagacagagacagagagacagagagacggagagatggagagacagagacagacacagagagagacacagagagagacacacacacacagagagCTATTGACTTAAAGAAAATCCGATGCtaaggaatcctgggctgag-gacgccaagtgacttagttaagatggcactgctaactagca------atcaagctgggtccacacctcagttctcc---tcctccaggctgtactctctctTGCTGTAGCTGAGGGCTTGTACTTTTAAGCTGTGTGGTCAATGTTTCT----ATCTTCAGGTTTT-CTGAACTGTAGTAAAAGAGAGACGCGTACTCGCAGGTGTCAGGGAAGCAAGGATCTACCGTGGAACAGGATGCGGGA------CAAATAATGACCCATTG--------TCATCCTTT--------------CCTCCTTTTGATTTCTTAACAAGCAGCAGCAGAAAGTTGACCCAGAGAGAAGCCCTTTA---------------------------TGTGGAGGGGCCCATTTCATTACACTTGACCTCAGTCTGAACAGACACGGCCACCTAATGCCTGAATGC---TCCATTAAAGGGGAATTAAAA-------------AAAAAAGGTAGAATCTCCACTCTCACACAAATTTAAA-CGAACACATGCCAGAGGTCTGATTAAACTCAATCAATGAAGGAACTAGGCAGATACTGTAACT
s HiC_scaffold_1 106997532 2751 - 233722169 aaaaaaaagaaatg-gatttaTCCAAGTTTGGAAAGCCTGTACAGTGCTTAGAGGttagagaaaatggaagaaaattaggagacttttaa-----aaaattggggAGATGAAGGGATCTAATCCACTAAAAATTCACCC-------TGTCAACAAAT--GAGAAATAGACAAAGGAAATGCCATATCAtttattcctttgcatttattgcCTATGCTGT--AGTAAGACATGATCTAGCCACTGGGGTATATACATCCCCATTACCTGATGATGCCCATAACCTGGCTT-CTAAGGACTTAGAACTGCTCATTTTTCTGGAGA------CCTCCAGGGGAAAGTACTCTCCCCAAGGATGACTGAGGCATTATGGTGCCCCCTCATGCACAACACAAC-ACTGATGGTGGGAATTAGTAGAAAGCATGTCCCC--TTGCCCC-----------------TGTGGTGTGACTCAAAGCCCCAGAGTTTCTCCCAGAATCAGGCTGAGGCTAGATCTTGTGCCCA-TCCCTTTTCCCTCACCTCTAGCGTGCTCCCTTCAAAAATCACTAATGTAAGAATCCTCATTTCAGAATCTGCTTCTTGGGAACCCAAGTTAAGACATAGGGCATTGCTGAGTAAATCAGGAGCAGTCTCCTTCCTCAA--------------------------------------------------------------------GGAGGTTCTT-----------------------------------CTGGGAGAGGCT---------------------------GTGGACAAATA--------CATAGGAACCATACAGTAACAGTGATATCCTCAG--------AATATACAGGAGTGGTCCACTATGTGCTCCTTAGAGGAGAAAATTTTTGAGCCAAGAATTGAAGTATGACCAGGAGCTAGcta---------------------gagaaagagacacagaaagaatttgccagaaggaggaaaaagaatgtA--------------TTGAAGCGCAAATAGATGGTACTGAGCAGTGTGCCCCTCCTCAGTTGCAAGTAGTTCAGTGTAACTGAAAGTAAAGTAACAGTGGCAAGAAAAGATACCAGCCACGTTAATGTGGTAAAGATTATGAAAAGGCTAGTGAGCTATTAACAGGTGTGTATTGTATCACTAGGCAAAGGGTGTTACCAGGCAAGGGTTTTAAGTAGA-------TGCTAAGACCTCTGCTTAGAAACCAAAactaaagcaaaccaaaccaatcTCAACCCAACTCAACACTGGAAGGCAATGTGGAGAAAGACCTTAAAGGGCAAGGTTGATGACAGGGACAAAACACTAGGCATCATTACAATTGTGATATAATGGTTAAAAGCTAGAGTCCTGGCATTAGAG--AAACAGTCTAAGTCTCATCTCCAAAACCTATCAGCTTGTCCAAGTTATTTCTAAACTTCACTTTCCTTAACTGTAAAATGAAGCCACTAATGGTTCATAACTACAGTAGGGATAAACATG----TAGGTAATAGATAAagaggattttatttatttatttattttggtaccattTGGCCTTCTGAAAGTAACATCA-AATGA-ATTCTATCTATGATCTGAATTTGAGTgaca----tggaaatgaaaatatgtagACGGAGTTAAGAATCGTGACAGGAGGAATGAAAAGGACATGATGA-----TGAGTTAGAAATGAAAGACAAAGGCGTCAGGATCCCTGGCGTGGGCAGCAGGTAGGTTGCAGCAT-------------------------------------CCTCTAT-----------------------------------------------------GGCAA--------------------------------TGAGACTTCAGCAACACA---CAGAAAGA--GTAGAGGAGATAGTGCAGGTGGTGTGGGCTGAGAATAGAGAAGA----GAGCCATG----------GGAAT-----GAAGGTAAGAAGGAGTCC----TCTCAGGGAATTCGGCCTG-GTGGAGAAAGCACATAATTAAGACGCTCACTAGAATACAGTGGATGGTTTCTGAGCCGAAGCTCTGGGGTGgatcccagagactgaaggaatTGAGGCTGGGACTAGAGCTCCAAAGATCAGAGCTAAAATTGGAGACAATCAGCAGGGTggggtgggaaaggaa----aggatggAACATCTTGGAAAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTAATAATCTTAACCCA--GGCAAAATAATTGATTATAATATCCTAA---TGTAAGGAGTTTTAGTACTCTTGAGTTG----TCTGCTTCTCATACAACTCTCTAACACTGAACTCCTCAGAGTTCTGTGGGA-CCTTATAATTAGAGGCCACCTTAGAGGGGAGCTGAAACC---ATGGAGGCA-CCCTACTACACACGAATGTCTGTTTTCCTTTGCAAATCAGGACTGTATGAAAACTtcgttttgaaaaaaaaa-------------------------------------------------------------------------------------aaagatgaaag------------------------------------------------------tatTGACGTAAGATCAATGTACTGATGAAGAATCTGAGGCCCAGAGATCTTAAGAAACTTGGTTCAGATCATATCGCTAATTACAATTAAGCATCAAGGTGGGCCTAGAGCTTAGGTTTTTCGATTCTCAAGCCAGTATTCTTTCTTGACATGTCTAAGACCTGGTACTTCTAATTTGCCTAGttcatatttatttgtatcttcagatttttctgaatgGTG--ACAAGAGAGATGTGTACTTTTGAATAT---AGAAACAAAG------TATGGGA-GTGATGTTATAGTTTATCAATTAA--AACCATTGCTGGCATGTGATCTTTTACAGTGAAATTCTCCCctcttttaattcctttaagaTCAGAAGCAGAAAGTTAACCCAGAAAGAAGTCTGTCAATCTTTGGGGATCCAGGCTTGCTTTCCTGCCAAGGGATTCATTTAATTACAGCTGACCTAAGTTGGAATGAACCCTACAATCTGCTGCATGAAATCCTTTCCATGACCTGTG--TTAAAAGATTCTTTTCCCAAAAAATAGTAGAATCATGACTC---CTTAGATTTAAAATGAACACTTGCTACAGATTTTATTTAACCCAGTCAACAAGGGAATTAAGCAGATGCTATAACT

a score=119508
s chr3            97323736 3177 + 160039680 ATAAACTCAATGACAT-TAAAGAAAAGTAAGAGTGTATTGAGAGTCAACAACAGGCAGT---TAATTTTCTCCTAAAGTGGAGAGAGAACCATTGCCCACCATAAGTCAACTTCAAGTCTGCGAGAAA---------GAACCATGTCCTAACCTTTAAGGGGTGGTAGTCACCACTAA----CGTCAAATTCTAGGCTGCGGGACTCTGGTTCTTAAAGCCTCCACTTCATCTCCTTTCATTTATTTCATTTCGTACCAAAATGAACAGCTGAATCACTTGATGCTTAGACTTCCTGGGCCCGTCCACATTTCCCACACatgagatgtaatgtatataaagtgcttcatacaatgcctgccgcatggcgagcactcagcaagtgttaactctGACATTCATATACATTAAGTCTATGCTATCTGGATTGCAGGAGTCAGCTTCC-GTGCTTAGCGCTGTATTGATGCCTGCGTGGGTGACAGCGATCTTCATTATCCGATGCGCTTCCGCTTGCCTGACTTTCCCAGATGGCTCACTGAGGTGCTTTT-TGTCGAGCTCGCCACCA-TCTCCAGGCTCACCCTGGACGGCC--CTCAGAGCCTC--AGCCTTTACAAGTAGCCAGGGTTTCTCCACACACTGGGCACC-AGCTGACGC--CCGGCTGAGTGATTGGGCGCC-CCTCCTCTCCGCCCCATTCGGAGCTTTCATTGCAGCAAACACAGACTTTCCCTTTCTAACTCTCCTGCCACCCAGAACCGTCTTTCTAGATCTCC-TGCCTCGTT---TCACCCTGTCTTCCTTTTCCTTGACCTTTCTGTTTCATGTTCCTCCCCA----ATCACTTAaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaaaacTGTCAGTACACAGACGTTCATTGGTTTTAGAAAATATTTCCTCCTTGCTTCGTTATCTTATTTTAGCTGTACCCATTTCCTCTGCTGCCTACCCGTATAAATGAGGCAATAGTTCAAAGTGTGACTTATAAAAGA----TGAAACGCTCCA--------CCCAGGGTAATGGAACACAAACTCGAAGGCAGGCACTGACTCTGTGGAGAGAAA-CCTCCCCGGTGCCTCTTGCTTGTGATGCTGCGTTGGGATGGATGATGTTAAAGGCCGTCTGCAAGTGGAGAGGG-TGGGGTGGGGTGGAACCTTGGCCGTCGAGAGGACGAAGAGTCAGACGTGGAAACGAGTCACTGGGGTTA-TGGAGTTCACAGTCCTGTGCCCTCGTTTTGCCGGAGTCTCTG------------------AAGTGAGCATTTTTAAGTGACAGGCATCAGCAGGAAAGCTCAGAAGAGAGGGAGGCAGATGGCACAGCTCTCCTTGA-------------------AGCAGGTAAGTC------------------------------------AGGCGGCCTCAGCGTTCAGGAGCACTTCCCTCCGTGCAG--------------CGGTAAACCAAGTCTGCCCTAATTAGAGTATTTTGTTGTATTTTCATACGTATAATAATCTAGTTTA-TCTGCAAGTAATTCATTTACAATTCAATTAAACGACCAAGGAGAATAAAATGTTAAAATAAACATGTGTTCAAATAAGATACACTGTGTATAATTAGACCCAACACATAGGCCTGTCTTAGCATTTGATTTGCATGATAATACAAATAGGTCATTTGAGGATACGCCAAATATCAGAGATTAGCTGACCTCTGCGTTCCTGCCAAGCTGGGGAGGACAATTTTGTGATCTGAATGAAAAATGAAAAAAGAAAAAAAAATTCAGTGTGTTATCCAAATGTTTACAAGAATCCAGCTGTTTGATGTCAGGTAGACAGAACACCCGGATAACTGACAGAGACATTTCACTTTCATCCAGATGTTTCTGTATTGTGTTGATTTACTCTGACACATACCAAAGTTAAGTCACTTCCTCAGGATTCATGA-AAAATCTTCTTAGTATACTGACAATAAAACTGCTTAGAGGTATGCTATTTTGATATTGCCAGCAATATCAGGGTGTTCCTACGGC----------------------GGACATGAAACCGGTCCATTCATTTCTCTTTACTCTCCATCTCTCTGCTCTCCTCACTGCCC------ACCACCCAAGG-TCTGTGTTAACCTGAGCTGTGACCCATGACAAAGCGGACTCCTCCATCACCGGACTGTGCACTGTGGCCTTTGTCTCTCAAGCTGCTCCTTTTCACAGCAATCACCATCTCTCTGGGACATCACTATCTGGGCCACGGACTGGCCGGATCAGGATTCCTAACCATCTTAAAGGTTGATTGCGGTATAGGCAATCACAGCCGCCATTCATCCTCCCATTATCATGGTCAATAATACAAGTCATCTAGATTTGGCTGTGATTCACAGGCCTGGCTGAAGTGACGGATGCTGACCCAGAGTCCTATCCACACGCCCATAAATCTCACTGCCGTTCTTGGCTTTGCAGCTGGAGCTACTATATGCAGAGCCCATGATGTTTGCAAATCAGCCTCTTTGACTCAGCTTCTTCCGGTTGCCTTGACTCCCAGTGAATCTACCAGTGCCTGATTGCTGCCTGTCTCCAGCCCATCTGGTACCTCTCAGGGCCAAGATGTCTTAAGCTGGACCAGTTAGCTTGAAATT-----------GCACCTTCCTCTGTTACCTTCCTTGGCTTCTCTGCCCTGAATACCCGAAGCTTCGTCCCCTTT---AGCATCATCTCCCTCAGG-TTGCTGCTCAGATTGTGTTCTTGACACGCAGGCCCCTGAATCTTACCAGAGGCAAC--AGGAACAGGGGTTCTGG--AAA------------CATTGAGAAcattgc---acctctctgggctgtattgtcctaatcctgacgtgacagtgctggact--aaatcaggtctgaggtcccctccagttctaaaatCACACCATCTTCCTAATGCCACGAGACTGGCTGCCTTCCCAGTAACCACTGCTTATCAGTTTATCTAGTTATTACACAGAGAT-ATTTTGAGGGTGGGGGTGGGGAAGAAAAACCAAGGCTCCAATATAAGCATCTTGAAA-------------GCTTGTCTGCTAACTCTCTCATCTTTATGTGCCCCC---TTTCTTCTCTGTTAAGTGTAAAACCCAGC-TTAACCGTGTGCATGGCCACCATGCTGTCACTTCATCGAG-TGCACAGGA------AGGAGAGACACACAGGGAAGGCTTAGTGCTCTGAATGCCTTAGAAGCAA---------------------GGTGCTGTGAGGGAAAGACTTCCTGCCCCCAGGAACCAGA--GGAGTGAGAGT-GAACTGGGAAGACAGACAGACAG
s HiC_scaffold_1 107002625 3278 - 233722169 ACAAACTCAATGAACTACACAGAATAATGAG-GTGTACTGAGGGTAGACAGTGGGTAGTGAACAATTTTCTTCCAAAGCTATCAGAGAATCACTGCTTATCATAAGTCAATTTCAAGTCTGAGAAAAATTACTACTTAACCCATGTCCTATCCTTTAAAGGTAAATAATCACAATTAAGTTATGTTACATTCTTGAATGCAAGAATGTG-TTCTTATA-TCTCTATCCCATACCATTTCAT----------------------GAATGGGCATATTACTTGATGCTTAGACTTCCTAGGCATGTCCACATAATCAATATATAAG---TAATGTGTATAAAGTGCTTAATTCAATGTCTACTGTACAATAAGCACTCAAAAAATGTTAACTCTGACATACATGTG--TTAAATCTATACTAC----AttgcttgaattatttttttgtccATGTGGTTGTGTTGATGCCTGTATAGATTATACCTATTTTCATTATCCaatattattct---------attttccttGTAAGTTCAAGGGGGTGTTTTTCTACAGTGGTCTCCACTAGTTTTCAGGCTTCTCTTGGAGGCTCTTCTCACAGCATTGAAGTTGTTAATACTAAGAAGG--CTCTGTGCACTGTGGGCACCTAGCAAATTCTGCTTGGTGATTGATTTGGTATCACCTCCTCTCCAACCCATTATAAACTTTCATCACTGAATATAAGAAC---CCCTTT---ATCTATCTGCCATCCAGAACAGACTTCCTAGACCTCCCTGCCTCATTGACTCACCAT---TTCATTTCAAGGGGGCTTCCAACTTCATTTTCCACTTCAgactatcatttaaaaaa-------------------------------------aaaaaccctgagcaTACATGCATTATTTAGTTTTGGAAAATATTCCCCACTTGCTCTTATATCTTAATTTGGCTGCACCCATTTC-TAGGCTGCCTACCAGTACAAATGAGACAATAGCTCAGTGAACaacttgcaaaagaaaaatgaaaagctcCAAGCAGACTTTCAGGGAAATTGAACTCATACTTTAGACCACAAGCTGAATGCGTGGAGAGAAAGCTTCCCCTGCACATCTTCTCTGTGGAGCTACATTTGGGGGAGTGTTGTTAAAGGAACTCTGAATGTagaggggggtggggtgggatgaaGCCTTGGCCATCTGGATGAGAAAGATTCAGATGCTGCAACAGATC--TGGAGTTAATGAATTTCACAGTCCTGTGCCCTTACTTTGCTTCAGTCTCTGTCTCGGAACAGACACCTGGCGTGAGC-TTGTTAAGTGCCAG-CCtaagtaaagaa------atgaaaaagagccAAA--GCAAACCTCTCTGTGAGCCCTTCTCCCTCCAAAATAGCAGGTAGGTCTATGAGTGAAGAAAGGAACTCACAGCCTCTCTGTTCAAGCAGCCCTAAGGTTCACACATATTTATGCacctgcaggttttttttttttttgataaatcaAGTCTTCTCTAATTACAGgatttcattgtattttcatacatataataatctAGTTTACTCTGTAAACGATTCATTTACAATTCAATTAAACAACCAAGGAGAACCAAATGTTAAAATAAACATGTGTT-AAATAAGATACAATGTGAATAATTAGAcagaacacatacacacattttagcatttgatttGCATGATAATACAAATAGGTCACTTGAGGATATGCCAGATATCAGAGATTAGATGACCTTTAAGTTCCTGCCAAGCTGGGGAGTATGATTTTGTGAtctgaatgaaaaatgaaaaa-----------tttagtaTGTCATCCAAATGTTTACAACTTTCCAGCTGTTTGATGTCAGGTAGACAAAACACCCAGACAACTGACAGAGGCATTTCATTTTCATCCAGATGTTTTTGTGTTGTGTTGGTTTAGCCTGACACAG--CAAAGTTAAGACACTTACCCAAGATCTGTGACAAAATTTTCCGAGTATATTGGCAGTAAAATTATTTAGAGGTTTGCCATTTTAGTA---CCAGtaaca--aatatttttctacagCCCCATTGATGTCTCTGGATCCATGAAATGAAAATAGTcaatttggttttcttctttctccagcTCTCTGCTCTCCTCATTGCCTCCTGCAGCTACCCAAAGATCTCTGTTAACCTGAGCTCCGGCCTATCACAAAGTGGGTACTTCGATCACAGGGATGCCCATTGTGTCCTTTCTCTTTGAAGCTGCTTTTGTTCA--GTGATCAC--TGTCTCTGAGACACCAGTGTCTGGGCCAAAGGCTGGCCAGATGAAAATTTCTAGCCATCCTAAAGGTTGATTGCTGTACAGGCAATCATAGCTACCATTCGTCTTCCTATTACCATGGTCAATAATACAACTCATCTAGATTTGCTTGTGATTCAGAAGCCTGGCTGCAATGACTGATACTGACCAAAAGTCCTCTTTACACACCCATAAATCTAAACAATGTCCTTGGATTTGCAGCTGTAGCTACTATATGCAGAGCCTGTGCTGTTTACCAATCAGCCTCTTTGACTCGGCTCTTTCTGGTTGCCTTGACGCCCGGTGAATCCCCTGGTTCCTGATTACTGGCCATCCAAAGCCCATCTGGTACCTCTCATGTCCTGAATGTCTCAAGCTTGACCATTCAGTTTGAAACTGTGCTTCTTTAGCATCTTCCTCTGCCATCTTTCCTGGCTTCTTTTCCTCCAGCACCTGCAGCCTCTCTTCCTTTATCATCATcatctctctctggttttctgCACAGATCTTATTGCTGCCTTTCAAG-CCTGGAGTGTGACCTGGGGTATCCAAGGAGTA-AGTTGCAGGCCAAACTCCCTATGTGCCCTTGAGCAAATCACAAAACATTCCTGGGCTCCACTATCTGAATCTTAACATGCGATTCTAAGACTAAAAATCAGGTCTGAGGTCCCCTCTAGTTCTAAAATTACA--------TTAATTCGGTTAGACTGGCTGCTTTCCAAGGTGCCATTGCTCATAATTCTATCTTGTTATTCTGAAGGGATGATTTTGAGGGT------------GAAAAACTCAGACTCTAGGACTAAGAtcttgaaaaattagaaaatgtgccTGCCTGCTACCT-TTTCATCTTCACGAGCCCCCCCTTTTCTTCTGTGTTGAGTTTCAAACTCAGAGTTAAACATGCATGTTATGACAGTGCTGTCATTTCCTCAAATTGCACAGCAGAAACCAAGAGAGGTATA---AGTAAGCTTAACACCACTGGTGTTGTATGAGCAAACCTCCGTGGCCCAGATTGGGAGTTGTATGGGAGAAAGAGGCTCTGCACACAGGATCCGGAAGAGAGTGAAAGCAGAATGGAGAAGAGATACATAAAG

a score=27051
s chr3            97329235 2587 + 160039680 ATCCAGCAAGGAACAGAATATGTCCAGGAAGGTAACTGGGCAGACCAGTTCCCATTGAGGGTAGGGCATTGGATAGAAAATCAACAAATA--TACCAAATATCTTTCATATAGTCCAGTACAAGGGACTGTAGGTGAA-----CATAAGACTGCTATCTGCTTCCATGGACAGGATATACCCA----AGTGGAAGACTTGGGT-----GTGAAATGGCTG--TAAGCCTGTTTAAC--ACCAGCAGATGGGTTATAGCATATAGTGAATGGATACATTCTTT-AGATGTTGCCAAAGGCC-TACCTACCTTTGAACTGAATTACGAGAGCAAAC--GCCACCTCCTCATGTTCTGACTCTTTCTCTCTGTGAGTATCCGAAAGATGAAGAAAGACACAG-AGGAGGCACCA--------CAAGGTTACAGAGGCATAGAAGAAGG----CTGACTAAGTAAG---CAGAAAGGATATTCAATATGTAGCCATTCACTGGAAT--ATTCAATATGTA--------GCCA-----------------------------TTCACTGGAATATTCAATATGTAGCCATTCACTGGAATATTCAATA---------------TGTAGCCATTCACTGGA---ATGGTTACCCAGTCCAAGAAGAC--TTCAGATAAGTCCACGAGTGAGGCTAAACAGCATAC-GGGGAACTTTGAAGTTAGATGCAGT-TAGGTTCTTTGTTCTT-TGTACATCCAGGCAAGGCTCCTTAACTTTTCTGAGTTCCTTTTCCTTTTGGCAGGAATAGCGAT-CCTATGCCAGTAGGTTGTTGTGAAGCCATGCAGAGGATTACA----------------GTCATACAAAT-ATCCAGTAGGAAGTCTGATCTAAAATCAATACTCAACAG-TACCAGTTGTTAATGACAAGACAGTTCCAGGTGCTTGCAGCCTGTCACTTTTTGCTGAAGAAG---------CTCTACAAATATCAGAATAT-------CACACAACACTGAAAGTGTGTAAAACA----TTGTCATCTCTGCTTTATGCATGGGACACCTTAGCACCATGAGCCGGAGTTTTGTGAGAGAACTAAGCGATGCAGGGGAAAGATGGGGGGAGGGAGGAAAGCAGCAAAGCCTTCAGGAGACATCATCGCCCACA--CCGCCTGCTTTCCACAATCACCTTCCACCAGATTTCCAG---CTAGCAGAT-AGGTCACTTTTGCTTCCCTCTGCAGGAAC---AGACTTGGCTTGCCTTGGCTGGT------GCCAGCAAGGATGCCCTGTACCCTGGAGCATTTAATTCTCCCAGCGTCAGGCAGTGTTAAAGAGGATGAGCTCTGATGAGAAGCAACACCGGTGCCTTCTGAGAACAACCCGTGGATAAGATTC-CCATGGATGCCTCTTCCCACCTTGACTGTGACAGGTTGGTGATAATCTGGCACGGGGGGAATTTTTTTCTCCCTCGGCATCTCTGCAACTGAGTTCCCTGGCTCTTTCAAAACCCAGGCAAGCAGAGTCCAGAACCTCCAACAG--TTCTGGTTTCACTAGC--------------------------GCTGTTGTGGTTC--CTGTGTGCATATGCCCTACTTGTTAAAGTGG-ACATCTGGGGGAGTCTTTTTTTTCTAATCACAATTTTCATTACCTGAGAAGTGCAGGGGAACTACTACCATCGTGAGATGTACATCCATGGATAGAATTGTGCCTCAGAAAGTCCAtggtgcttggaatgagactggcccccatagtgggttcatccccagtttgtagaattgtttgggaaggattaggaggtgtggttttgttgggggaggtgtgtcactgggaatgaa---tgggctctgaggtttcaaaagtcctagccattgcagctaatgctctttgtctcatgctagtaaagatgtgagctttcagctattgctccggcaccatatctgcctgcctgcctgcctgcctgcctgcctgctctctgtggctgtgatggccatggactctcatcctctggaactgtgagccccaaattaaatgctttccta----agttg----------ccttggtcatg-----agtcttatcacagcaaGC-----AAGCAAGACAGGGATAGAagg--gtctagcacatagtaggtactcagcaagtgCGGGTA-TATGCAAAAAGTAGGAGCT-GGTAACCACAAGAATGCTTTAAGTGCTAGGCTTCTGGCCCTGG-GAGTCACTGGAACTTACTCCTCTTCTTCAG---TCAAGTCCCCACTTCAGTAGGGTAAAAAGC-GTTTCTGTGAGCGATCTCCACACGC-AGGAAGTAGGGGTCCT--CGCCTTTGCAAATC--TGCCTG-GTCCTTCTCAAGAAACCTTTCCCTCCTGTGTGGAAGCAAGACTATT-------TTCTCC--------------GACAGC-ACAGCATCGTTAGCTCTCTT---AAAGCTCTTGTGTGTGCACGATCCAGTGTCTGCTCGCCTCTACCTTC-----TCAGTATCGTCTTGCCTCTGTTCCTTTAGCGCTCGCTGGGGATCTTCAAACTGACCATGCACACAATGCATTTGCTATCGCCGTGATCCCTGGCATCACAGAATGA-----CAGGAATGA-AAGGAGATGCCAGTCCCTGG-GCTCCAGATGCCTCCGATCAGCCTGGTCCACGTGCGCCAATCCAGGAGTCGTCGC-------GACGGATCACTGAGACTGCTCTT-CCATGTACA-GGTCCTGTCTGTTTTATTTCATATTTCCTTTCAGCAGCCTTGTG-AGAAAGCACAGATGTTGTCCCC
s HiC_scaffold_1 107008263 2564 - 233722169 ATCTAGCAAGGCACAGA-CGTGTCAAGGAGAGTAATTAGGCAGACCCATTCCCAGGAAGGGCAGGAAATtagatataaaagaaacaaatacatactGAATGCCTATCATGT-GTCAAGCATATGTGGTTACAGATGAAACACACAGAAGAC------------ATGAGAACGAGATATAAACACAAGAAAGGAAAACTTGCATCAACAGAAGACTTGCTACATaggaatatataatttattatgaaATGAATGATAGTGCAGAGTGACTGGGCAAACTTTTTCAGATCTTGCCAAGGAAGGTGCATATATTT--------TCATGGAGATGAACCGGCCTCCTTAGCAGGCT----------------------------GAGATAGAGAGAACCCTGGCAGTGGGTACTAATGAAAGGCAGGGCTGGAGGGGTGAGGGGAAACAAATCTTTGTGAAGTAAGGCCCAGATTTCAGTTATAATATG-AGTACTGTATTGTATTTGGCTCAAGGTGTGCGAGTGTGGCCAAAAGACTGcaaaagacacagagaaacatACTTACAGATATATACAG-ACACAAACATAGATAAGGACAGGCaagaagaattaaagaaactggTTGCTGctgaatagataaataaataactagCTGGAGGAAACAATCCA---AAGTATGTGTGAGAGGTTGAGCCACATATTGGGAAATTTTTGAATCAGACTCAATATGGATTCTTTTTGCctatatatatttagaaaagtttatttaacttttcaaaatgtCA---------GACAGAGATAGCAATACCTACTTTACTAGGCTGTAGGGAGA----GCAAAGaactaaatggaaaaatatgaaatattatatgTATGAAATAGTATAAAGTCTGATCCAAAGTCAATATTTGATAAATATCAGCTGTCAATAAAA-----GTTCAAGGTCTTTGCAGGTTGTCAACTTTTGCTGAAGAAGTTTGAGATGCTCTATAAATATTAGTATATGAAGCCTCACACGACATTAAAAACGTGGAAAACAAATGTCATCATCCCTGTTTTACGCATGGAGAACCTTGGCACTGAGAATCA-AGTTTCACCAGAGGAATAAGCAGTTCTGTGGGAAGATACGGAAGAATGGGGAGGAAGTAAAGCCTCTATCAAGTTTC-TCAAACATGGCCTGCCTGCTTTCCCCACCCGCTTTCCAGCCTCTCTCCTGGCACTGGAAGATCAGGTTACATTTGCTCTCCCTCATTTGAGCTccagcccagactgggcttggcTGATTGGAGGGTTAGCAAGGATGCAGTGTAACCCTGGGCATTTGTTTCTCAAAAGATCAGGCAGTGTTAACAAGGGTGAGGTCTGATCA-CACCAGCATTGGCTTCTTCGGAGAATGGTCAA-GAATCAGACTCTCTTTGGCAAGCTTTTGCTACTCACTATGTGACAGCTTGATAATACTCTGTCCTGGCTGAA----TTTTCTCCCCCAGGACATTC----CTGAGTTGCTTCaccctttaaaaatatatgtaagcaGAACTCAGAACTTCAACCAGCCTTCTGGTCTCAGTAGCTGGCTATGTTTCTGTTACTCTGATTTGCTGCTGTGGTTCTTCTGCATGAACGTGCTC-ACTTGTTAAAATGACCCATTTATATAAGTCTTTGTAATTTCCCCACATTACTCAGCAcctgagaaatagaagaaa------accaGTGTGTTGTGTAAA-------------------------------------------------------------------TCATTTCCAGGCC---------TTTGG---------------------CTGCTAG-------GTGGCACGGGGGATGAGATCCAGGCCCTGAGGATTC---------------------------------TCTGGTGTCTGAAAGG------------AGTCACTG--------CCACCTCCTGCAGCCTGTTTGCA----------------------GCACATACTTAACAGGAAATACCACAAGCTGGAA--ATAAGCTCCTGGAGAAATGCACTAGCATTGGAGTTGAACAGAGATTCAATGTCCATGTGTACAGTTGTACTTCAGAAAGACCGGGAAGCAAAAGAGACCTTAGAGGCTGCTGagtacatagtaggtgctcagcaaATGGTGGTACCATGTGAAACACTAGAGTTCAGCGACCTCTACAGTGCTTGTGGCAATGGGCTCTTAACTCTGGTGATTCACTACAAGTCACTCC-------CAGGCCTTAAGACCAGGGTT-AGTAAAATAAGAATCTACTTACGTGAAAAAGCTCCACAAACTAGGAAGCAGACCCCTTGCCTCCTTTGGAATTCTATACCTACCTCCCTAGCAGGAAATTCTTCCCTGCTCTGTCTGAGCAAGTTCATTCCTCTGGTTCTGCCCTCAAATGAGATGGAAGGCTACAGT-TggtaaggtttttttaaaaaacttctttaTGTCCATGTTACA-TGTTCATATGCCTCAACCTTCCTTCTCCATTAATG-CTGGTCTCGGTCTCTTTAGCATTTGTCACGGATCTT---ATCAGCCATTTCCA----GCACCTTTTACCACTGCCACAGCTTCTATCAGGGAATGATCCAGCTGCCATGATGACAAGATACCGGGTACTGGTGCTGCCAGTA-TTCCTATCTGGCTGTTTTACGAGCCCCAATTTGGAAGCAGTAACTTAGCTAGGGTGATCA-------TGTTCTTACTGTGTGTAGGGTTTTTTGTGCATCACATCA-ATTTACCTTCAGCATTCCTATGAAGAAAATACTAATATCATCCCC

a score=106535
s chr3            97333498 6499 + 160039680 [encoded data, 7065 characters]
s HiC_scaffold_1 107011396 6127 - 233722169 [encoded data, 7065 characters]

a score=25571
s chr3           97410217 925 + 160039680 TACTCTCTAGCCACTGCTATTGTTAAGGAAGGC---ACTCCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCC------------CATGTC------CAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAAC-AGGCAGGGACT--CAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATT----CACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTG
s HiC_scaffold_1 56313456 945 - 233722169 TATTCTCTGAACATCACTAG-GTTAAGGGCTTCTGAAATACCACCAGGTTCCTCATGGCAGCCTTCACATCTttattcctcaggctgtagatgatGGGGTTCAGCATGGGGGTCACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCGGAGGGAATCCTCAGGATGGTGGTGAGGATGAAGACATAGGAGAAAGAGATGAACAAGACTGGGATTGCCAGG---AAGATCACAtttgtcacccccatgctgatCACATTGACGGAGATGTCAGCACAGGCCAATTTCAGGACAGCTAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAGGGCAGCCTTATAGCAAGTGATGTTTGAACCATGGAGGCAGCACCCCCAGCCAC----CCAGGAACTGATGGCCATGGGCACATAAACAGCCTTGCTCATGATCACAGGGTACCTGAGTGGgttgcagatggccacatagcgatcAAACGCCATCATGCCCAGGAGCACACACTCTGTGGC-TCCCATGGCAAAGGACAGAAACATCTGCCCAAAGCAGGCTGAGAAGGAGATGGTTTTCCTGGGAGTGAGGAAGCTGTCAAGGATGAGGGGGACAGAGGAGGTCGTGTAGCAGACGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggcgtGTGCAGGTGGGAGTCAAGGATGGTCACCAGGATGAGGACGCTGTTGCCCAGAAGGATCACCAGGTACATGGCCAGGATGAGCACAAAGAATGTTTTGTCCAGTTTTGGGTGGGCAGAGAGACCCAAGAGAACAAACTCTG

a score=65176
s chr3            97410221 1045 + 160039680 CTCTAGCCACTGCTATTGTTAAGGAAGGCACTCCA----GTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTCAAATGGAGTCATTGCTACAGA----GAACAAAGGATCGAGAGTAAATATGTACAGAAGATACTGACAAACATGGTTCTGAATTACCAGGGTCATGTCCAGTAA
s HiC_scaffold_1 107130774 1050 - 233722169 CTCTAGACATTGATATTGTCGGGGAGTACAAACCATTTAATCAGCTTCATCAATGCGTCCTTGACATCTTTATTTCTCAAGCTGTAGATAATGGGATTCAACATGGGGGTTACTACACAGAAGAGAACAGAGATCAGGATGTCCATGTCCAAAGAGTATCCTTCTCTGGGCCTGTCATAGTTGAAGTTGGCCATTGTATAAAAGACCACCACCACAGTGAGGTGGGATGCACAAGTGGAGAAGGACTTGCTCCTGCCTGTAGCAGAAGGAATCTTAAGGATGGCTGAGATGATGAGCACGTAGGACCCTGCAGTAAACAGGCAGGGGCTCAGGCCGATGGTGGCACTGGCCACATACAGCACAGATTCATTGACAGAAGTGTCTGAACAGGAGAGCTTCAGGAGTAATGGAATGTCACATAAAAAGTGGCTGATCTCGTTGGGCCCACACAGAGTAAGCATGGCTGCCAGCACTGTATGTGTCACAGAATTCACCAGTGCACAGAGCCAGGATCCAGTCACCAGGCAAACACAGACCTTCACACTCATGAGTACTGGATATTGAAGAGGAtggcagatggccacatagcgatcATAAGCCATGGCAGCCAGTAAGACACATTCAGTGCCAGCACATGTCACAAAGAAAAAGATCTGGGAAAGGCAGCCTTCATAGGAGATAGTCTTTTTCTCCCGGAAGAAGTTCACCAACATGACTGGAATGGTGGTAGATGTATAGCAGATGTCTAAGAAGCTCAGGTTGCTGAGGAAATAATACATTGGGGTGTGGAGAGCAGGACAGACCCTGGTAGCCATTATTATGAGGATGTTCCCCAGGAGAGTTGTCAAGTAAATGACCAAGAAGACCAGGAAGAAGAAGCCCTGCAAGTTGGAGTGATTTGAAAATCCCAAGAAGATGAATTCAGTGACAAATGTCTGATTGTTCATTTCAAATGGTGTCACAgctatgaaacagaaagaaagaaaccacaata---ACACATTAAGAACACCTAAAAATGGGTTTATAAGTCGACAGAGCTAAGTTGAGTAA

a score=17241
s chr3           97410227 937 + 160039680 CCACTGCTATTGTTAAGGAAGGCACTCCAGT----CAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCC------------------TTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTG-----ATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAG-ACACATTCAGTTCCAGCACATGACACAAAGAA-GAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAG--AAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCAT
s HiC_scaffold_1 65363870 957 - 233722169 CTGTTGTTATTATTGAGTA--GCTTTTCGGTTCAGCATATATTTTACAGCAGCTTTTACATCTTTATTCCTCAAGCTGTAGATTATAGGATTCAGCATGGGGGTCACTACCccataaaataaagaaatcagcTTGTCCAAAGTTTGAAACTTGTCCTCCCCATGCAGGGCTTGGGCCTTGGGTTTTGCATACATAAAGAAGATGGTACCATAAAATATAACCACCACAGTCAGATGAGCTGAGCAGGTTGAAAAGGCCTTGCGTCTTCCTGTGGTTGAGTTCATTCGCAAGATGGTGTACAGAATAAACatataggagaaaaaaatgaccagaagaggaagaagcaggaatgCTATGTTTGATATCATCATGGTAATAATGTTGAGGGCTATATCAGCACAAGCTAGCTTGAGGACAGCTAAGATCTCACATGTAAAATGATTGACAATATTATTCCCACAGAAGGGCAATGTCATGGCAAGAGATGTTTGCACAATTGAATTTATGCCACCAGAGAACCATGACACA-----CAAGCCATCAGTGTACATACTCCCCTGCTCATGATGATGGGATACCTCAAAGGGTTGCAGATGGCTACATAGCGATCAAAAGCCATCAT-GCCAAGAAGTAAACATTCTGTT-GACCCCATTGCAAATCCAACAAACATCTGCACTGCACAcccagaaaaggaaatg--tttcttCTCTTTGAGATTAAGCTCACCAGTGTGGAAGGAACAGAGGAAGATGTATAGCAGATGTCCAGGAAAGAGAGGTTCcccaggaagaagtacatgggagtGTGCAGGCGAGAATCAAAGATGCTCACTGTGATCAGAACACCATTACCAGTTAGAATCACTAGGTACATGACTAGAATCACAGCAAAGTACATCATCTCAGTCTTTGGGTATCCTAAAAGACCCAAAAGAAGAAATTCTGACACAAATGTCTGGTTAATCAT

a score=24783
s chr3           97410230  977 + 160039680 CTGCTATTGTTAAGGAAGGCACTCCAG-----TCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCC------------CATGTC------CAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGG-CAGGGA--CTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACA-CAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATT-----CACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGT----------CATTTCAAATGGAGTCAT---TGCTACAGAGAACAAAGGATCGAGAGTA
s HiC_scaffold_1 56373031 1009 - 233722169 CTACTGTCACTGAGAGAAGCATTTCTGAGCCACCAGGCCCTTCACAGCAGCCTTCACATCCTTGTTCCTTAGACTATAAATGATGGGGTTCAGCATGGGAGTCAGAAGGCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCCTCAGGATTGTGGTGAGGATGAAGACATAGGAGACAAAGATGAACAGGACAGGCACCCCCAGG---AAGATCACATTGGCCACCCCCATGCTGATCACATTGACGGAGATGTCAGCACAGGCCAACTTTAGAACTGCCAAGATCTCACAGATGAAATGATTGATAACATTGTCCCCACAGAAGGGCAACTGTAC-TGCAAGTGAGATCTGCACCAAGGAGTTGGTTCCACC-AGCCAC----CCAGGAGCTGATGGCCATGGGCATGTAGGCAACCTTGCTCATGACCACAGGGTACCTGAGAGGattgcagatggccacatagcgatcAAATGCCATCATGCCCAGAAGCACACACTCTGTGGC-TCCCATGGCAAAGGACAGAAACATCTGCACAGCACAGCCTGAGAAGGAGATGACTTTCCTAGGAGTGAGGAAACCATCCAGGACCAGAGGAACGGAGGAAGTTGTGTAGCAGATGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggcgtGTGCAGGTGGGAGTCAAGGATGGTCACCAGGATGAGGACCCCATTGCCCAGCAGGATCACCAGGTACATGGACAGGATGAGCACGAAGAATGTTTTCTCCAGCTTTGGGTGGGCAGAGAGGCCCAGCAAGACAAATTCTGTCAC-CGTA---GACTGGTTGAATGCTTCCATTTCAAACTCTCTCTTTCATGCTTAAGAAAACCGAAGGCAGAAAATA

a score=19825
s chr3           97410231 909 + 160039680 TGCTATTGTTA-----AGGAAGGCACTCCAGTCAG---TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATA--GTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAG-----AGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGG-ACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCAC-CAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTC
s HiC_scaffold_1 51409597 917 - 233722169 TGCTGTTATTACTGTGAGAAAAATACTCTATTGAGGCATTTTGCAAGGGCTTCTTTCATGTCCCTGTTCCTGAGACTGTAGATAAAGGGGTTCAGCATGGGTGTGACCACTGTGTACATGATAGCTACAATGATATCTTTGTTGGCAGAACTGCTTACTGTTGGGAAAAGGTACTGTCCAAAT--ATTGCCCCGTAGTACAGAGAAACCACAGAGAGGTGGGAGCCACATGTGGACAATGCTTTACAGACCTTCTTGGCTGAAGGCACCCTGAGGAGGGTGGCCCCAATGTAGCCATAAGATACCAGAATGCACATAAATGGCAGAGTaatta--ccaccactcctattgtAAACATG----ACCAACTCATTGAGAAAGATGTCTGAGCAGGAAAGCTTGAGCAGGGCAGCAAGGTCACAGAAGAAGTGAGGAACGGTGTTGGCAGCACAGAAAGACAGCCGGGTCAGGAGAAGGGTGTGAGAGAGGGAGCTGGCACAAGACA-GGACCCAGGATATAGCCACCAATAAAATACAGAGCTCTTCCCTCATGATGGTGGTGTAGTGAAGAGGGTGGCAGATGGCCACGTATCGGTCATATGCCATTGATGTGATAAGGAAGCTATCCAAGTcagtaaaaaatatgaaaaaatacatcTGGGAAATGCACCCTGCAAAAGGGATGGACGTAAGATTAGTCCGCATGTCCATCAACATCTTTGGGACAGTGACAGATGAGAAAGAGACATCCGTGAAGGCCAAGTGGccgaggaagaagtacatgggggtgtggaggCGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGATCAGAAACAGGGGGAAGAACGCAGCCTGCTGCTCTGGCCCGATGGGGAGCCCCAGGAGGAGGAACTC

a score=25077
s chr3           97410233  988 + 160039680 CTATTGTTAAGGAAGGCACTCC-----AGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCAT---GTCCAGGGAGTA-GCCTTC-------------CTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGG-CAGGGA--CTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGA-GTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATT----CACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGT----------CATTTCAAATGGAGTCATTGCTACAGAGAACAAAGGATCGAGAGTAAATATGTACAGAAG
s HiC_scaffold_1 56348841 1015 - 233722169 CTATGGCTGGGTGAAGCATTTCTCATTCACCAGGTTCTTCACAGCCACTTTCACATCCTTGTTTCTGAGGCTGTAGATGATGGGGTTGAGCATGGGAGTCAGTACTCCATAGAAGAGGGAGATGAGCTTGTCTGTAAGGTCCTGCTTGTCTGCCCCCAGGGTTCCTTGGACTTGGGCTTAGCATACATGAAAAGAATAGTCCCATAGAAAATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCCTCAGGATAGTGGTGAGGATGAAAACATAGGAGACAAAGATGAACAGGACAGGCACCCCCAGG---AAGATCACATTGGCCACCCCCATGCTGATCACATTGACGGAGATGTCAGCACAGGCCAATTTCAGGACAGCCAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAAGGCAACTGTAC-TGCAAGTGAGATCTGCACCAAGGAGTTGGCACCCCCAGCCAC----CCAGGAGCTGATAGCCATGGGCATGTAGGCAGCCTTGCTCATGACCACAGGGTACCTGAGGGGgttgcagatggccacatagcgatcAAATGCCATCATGCCCAGAAGCACACACTCTGTGGC-TCCCATGGCAAAGGACAGAAACATCTGCACAgcacatccagaaaaagaaatggtttTCCTTGGAATGAGGAAACCATCCAGGACCAGAGGAATGGAGGAGGTCGTGTAGCAGATGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatggatGTGTGCAGGTGGGAGTCAAGGATGGTCACCAGAATGAGGATTCCGTTGCCCAGCAGGATCACCAGGTACATGGACAGGATGAGCACGAAGAACGTTTTCTCCAGCTTTGGCTGATCTGACAGCCCCAGCAAGACAAATTCAGCTAC---TGTG-GATTGGTTTATCAGTTCCATTTTAAATGCTGTCCTCCACTCTCAGGA-AAAGTAGGGATAGCAAACACATGCATAGG

a score=15645
s chr3           97410252 909 + 160039680 TCCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCA-TGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAG--GCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCA-----------CCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATG--AGTGTGTTCCCCAGGAGAGTTG-TCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGT
s HiC_scaffold_1 51302850 909 - 233722169 TCTCATCCATTTCCTGAAGGCCCCCTTGACATCTCCATTCCTCAAGCTATAAATGAAGGGGTTCAACATAGGAGTCACCACTGTGTACATGACTGTTAC-AATGCGACCAGTAGTCACTGAATAGCTGGAAAGGGGCCGGAAGTAGACCCATGTAAGGGTGCCATAGAATATGGTCACCACTGTGAGGTGGGAGCCACAGGTGGAAAAAGTTCTCCACTTGCCCTTGGATGAGGGGATCCGGAGGACTGCAGCGATAATGCAGGCATAGGAGGCAATGATGA--AGGCCAGTGCTCCATTGATGACAATTGCACCTTCTGTTTGAATCATTAAGGTGTTAAGGTGAGTGCTGGTGCAAGAGAGCTTCATCAGTGGATAGAGGTCACAAAAGAAATGGGGTATCCTGTTGTTTGCACAGAAGATCAGCCGGCCCATGAGAAAGGTATGCAGTAGGGCATGAAGGTGGGAGAGGACATGGCACATAGCCACTATCTGTGCAC---------ACAG--CATTCTGGTCAGGATCATAGGATAATGGAAAGGGTGGCAGATGGCGATGTACCTGTCATAGGCCATCACTGCCAAGAGGAAGTTTTCCACGGCTGcaaagcaaataaagaaataagtctGTGCTAAACAGCCCATGTAGGAAATGACCTTTGTAGGGGAGAAAATATTCTGCAGCATCTTGGGGACTGTGGTGGAAGTGAAGCAGATGTCTGCCAAGGCCAAGTTACCAAGGAAGAtgtacatgggggtgtggaggCGAGGAGTGGA---GATAATCAGTGTGATGATAGCAAAATTGCCAAAAATGTTGATTGTGTACATGAGCAAGAAAAGAAGTATGAGTGGAATCTGTTCTTCTGAGTGGGTAGAAATGCCCAAGAGAATAAAATGAGACACACTGGTCCAGCTGGT

a score=20975
s chr3           97410252 888 + 160039680 TCCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCAT---GTCCAGG-----------GAGTA-GCCTTC---CTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAG-GCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTC---AGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTG---TTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTC
s HiC_scaffold_1 65470317 905 - 233722169 TTCAGTAGGTTTT-TAAGAGCCTCCTTCACATCTTTGTTTCTGAGACTGTAGATTAAAGGATTCATCATGGGAGTCATCACCCCATAGAACATGGATACAAGTTTGTCAGTAGCGTTCAAGTTGTCTGAATCAAGTATGTCTTTAGACTTGGGTTACATGTACATGAAGAGGATAGTCCCGTAGAAAATTATCACCACTGTGAGATGGGCTGAGCAGGTAGAGAAGGCTTTGCTTCTCCCCTCAGAAGAGCTTATCTTGAGGATGCTGTAAATAATTAATGAGTAAGAAATGGCAATCAAAAGCAGAGGCATCAAAGTAAATAATGTCG-TGGCCATAAGCATGATAAATTCATTGTCTGAAATGTCAACACAAGCCATCTTCATGACAGCCAGaatttcacaaagaaaatgaTCGATGACATTATTTCTGCAGAAAGGCAATTGGACCACCAATGCAGTTTGCACTGCAGAATTGACAAACCCTGCAAACCAGGACCCAGCTCCCATGGGAATGTAGGAAAACTTGCTCATGATAATGGGATATCTCAGAGGattgcagatggccacatagcggtcaaaAGCCATCATTCCCAGGAGCACACATTCTGTGGTTCC----CATGGCCAAGCCAAGAAACATCTGCAGTGTGCAACCAGGAAAGGAAATGGTCTTTTTCTGGGAGAGGAAACTCACCAGTGTAGAAGGAATAGAAGTGGTCGTGTAGCAAATATCCAAGAAGGAGAGGTTCCCTAGAAAGAAGTACATAGGAGTGTGCAGGTGAGAGTCCAGAATGCTG---ATTGTAATGAGGGTGCCATTGCCCAGAAGGATAACTACATACATTATTAAAATGAGCACAAAGAAAAGAAGCTCAAGCCTTGGGTAACCAGAAAGCCCCTTCAGAATAAATTC

a score=38955
s chr3            97410252 986 + 160039680 TCCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTCAAATGGAGTCATTGCT------ACAGAGAACAAAGGATCGAGAGTAAATATGTACAGAAGATACTGACAAACATGGT
s HiC_scaffold_1 107191380 912 - 233722169 TCCAGCCAATTTCTCCAATGCATATTCAAACTCCTTGTCTCTCAGGCTACAAACAATAGAGTTCAACATAGATGTCACTACACAAAAGGGAACAGAGACCGGAATGCTCATGCCCAAAGAATAGCCTTCTCTGAACCTGTCATAATTAAAGTTAGCTGTTCCAAAGAAGACTATCACCACGTTCAAGTGGGATGCACATGTGGAAAAGGCCTTGCTCCTGCCTTGAGCAGAGGTAATCCTAAGGATTGTTGAGATGATGAGTA------ACCCCACAATAAACAGGCAGAAGCTCAGACCAATGATGGCACTGGCCACATGGAATGAAGACTGAATGACAGAGATGTCTAAGCAAGAGAGCTTCAGTAGCAATGGAATGTTACATAAAAAGTGGC----------------------------------TGCCAGCACT------GTCACA-AGTTTACCAGTCTACATAGCTAGGACAAAGTCACCAGGCAAACATAGACCTTTACCCTCATGAGTACTGGATATTGAAGAGGGTGGTAAATGTCCACATAGCAACCATAAATCATTGCAGGCAGTCGGACACATTCAGTGCCAACACAT--TACAAAGAAGATAATCTAGAAGATACAGTCCTCGTAGGAGGTGGTCTTCTTTTCCC---AGGTATTTACAAGCATGACCTGAAATATAGTAGTTATTTATCAGATGTGCAAGAAgctcaaatttctgaaaaaataatacattgaaaTGTGGACTGCAAGACTTATTCTTATG---------------ATGTTTCCAAGATGAATGGCCAAATCAGTGGTCAAGAAGACAAGGACAAAAGC-CCTTGTAATTCAAAATAGTTGGGAAATCCTAGGAAGAAGAACTCAGTGAC-----TGTTGTTTGAAATTTCTATTGCTTTCAATTCTTTCTCAACTAAAagtaaa--attgag---aaataaattctgaaaata--aagagatatgGT

a score=69183
s chr3            97410252 1337 + 160039680 TCCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTCAAATGGAGTCATTGCTACAG---AGAACAAAGGATCGAGAGTAAATATGTACAGAAGATACTGACAAACATGGTTCTGAATTACCAGGGTCATGTCCAGTAAAGAGTCATAA--AGGTATCTGGATAGTGGTCACCTGCTGGGCTAGCCTTCATATGATCAGTATT---------TTAGGCCAAGCCAACTTTGGACCCCAGGATTTTCCACAAACCTGCATGGCTGATAAGGGGTGAGAATAAATGGAAACACAGTCACAGCCAACACTAAGCCCTCAATGCTTACATTACTATAAACTTGTTGTTTCCTCGTCTCAATGCTATCTCTCTCTTATTATCCTCCTTTTTTGAAAACATTTAATTTTTCTCTAAAAGACATAAGTTTTCATTAAAAAAAAAGCAGAAAGAAAATC-----AAATGAATTCAGTCACCTGCAG
s HiC_scaffold_1 107160493 1340 - 233722169 TCCAATCAATTTCCCTAGGGCATCCTTTACTTCTTTGTTTCTCAGGCTGTAGATGATGGGATTCAACAAGGGGGTCACTATACAGAAGAGAACGGAGATCAGGATGTCCATGTCCAAAGAATAGCCTTCACTTGGCTTGTCATAGTTGAAGATGGCTGTCCCAAAGAAGACCACCACCACAGTGAGGTGGGATGCACAAGTGGAGAAGGACTTGCTCCTGCCTGTAGCAGAAGGAATCTTAAGGATGGCTGAGATGATGAGCACGTAGGACCCTGCAGTAAACAGGCAGGGGCTCAGGCCGATGGTGGCACTGGCCACATACAGCACAGATTCATTGACAGAAGTGTCTGAACAGGAGAGCTTCAGGAGTAATGGAATGTCACATAAAAAGTGGCTGATCTCGTTGGGCCCACACAGAGTAAGCATGGCTGCCAGCACTGTATGTGTCACAGAATTCACCAGTGCACAGAGCCAGGATCCAGTCACCAGGCAAACACAGACCTTCACACTCATGAGTACTGGATATTGAAGAGGAtggcagatggccacatagcgatcATAAGCCATGGCAGCCAGTAGGACACCCTCAGTGCCAGCACAtgtcaaaaggaagaaaatctggGAAAGGCAGCCCTCATAGGAGATAGTCTTTTTTTCCCGAAAGAAGTTCACCAACATGACTGGAATAGTAGTAGATGTATAGCAGATGTCTAAGAAGCTCAGGTTGCTGAGGAAATAATACATTGGGGTGTGGAGAGCAGGATAGATCCTGGTAGCCATTATTATGAGGACGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAAAAAGACTAGGAAGAAGAAGCCCTGCAAGTTGGAGTGACTTGAAAATCCCAAGAAGATGAATTCAGTGACAAATGTCTGATTGTTCATTTCAAATGGCATcacaactacaaaacagaaagaaaaagtcacaATGAGAACATATGAAGAACACCGCCAAATGGATTGGAAAATTTATAGAGACATACTAACTAATGTTGTGTAAGCAGCAGTCTGGATAGTGGTAATCTTTCAGATTAACTTTTGGAAGAATATTACTTTTCACTTATTGGGTCTAGCTAGCTCAGG--CCAAAAACTTCCTCCAATTCTCAGTGGTTAATAATGATTGAAAATAAATGTGGACTTGCTTAAAGTCAACAGACAGTCATTAACCACTGCATTGGTATGAGCCCATTTC-------TCTCAGTAATATCtcccttttatt-tcattgtttcttttaagCATCTAAGTTTTT-----GGGAAATAGTTtctcatt-aaaattaagaatataaaaacttTACAAAGAAGAATTTAGTCATCTGTAG

a score=6583
s chr3           97410253 393 + 160039680 CCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGT---CTGACATAGTTGAAGT---TGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAG-----AGATGATCAGTATATAGGAGCCTGCA-GTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGG
s HiC_scaffold_1 51472062 389 - 233722169 CTAAGCAGATTTCCCAGAGCACTTTTCATATCCCTATTTCTCAGATGGTAGATGAAGGGGTTTAGTATGGGTGTGACCAGACTGTA---CACAGCAACCGTAACATCCTTATC------ATAAATGTCACTGGATGAGGGGACAAAATAGAGACCAATAATTACTCCATAGTGCAAAATAACCATAAAGAAATGAGAACCGCAAGTGGACAATGCTCTGCAGATTCCCTTAAAGAAGGGAGCTCTCAGGATGGTGGCCCCAATGTGGCCATAAGACACCAGGATGCATGTGAAT-GGCAGAG-----TAACAACCATCGAACCTGCAATGAGAATAACCAGGCCATTGATAGTGGTGTCTGAGC-GGACAGCTTAAGTAAGGAAGGGAGGTTGCGGAAAAAGTGG

a score=18040
s chr3           97410253 905 + 160039680 CCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTC---TGACATAGTTGAAGT---TGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51486726 904 - 233722169 CTAAGCAGATTTCCCAGAGCACTTTTTATATCCTGACTCCTCAGACTGTAGATGAAAGGGTTTAGCATGGGTGTGACCCGACTGTACACTGCAGCCACAATAACATCCTTGTC------ATTATTGTCACTGGATGAAGGGACAAAATAGAGACCAATAATTGATCCATAGTACAAAGTAACCACAGACAGGTGAGAA-CACAAGTGGACAAGGGTTTGCAGATTCCCTTGATGGAGGGAGCTCTCAGGATGGTGGCCCCAATGTGCCCATAAGATACCAGAATGCATGAGAATGGCAGTGTAATGACCATTGTTCCTACAATAATAATAACCAACTCGTTGATAGTGGTGTCTGAGCTGGACAGTTTAATTAAGGCAGAGAGCTCACAGTAGAAGTGGTAAAGCATGTTGTCTCCATAGAAAGAGAGATGGGAGAGGAGGAAGGTGTGCACAAAAGCACTGGCAGAAGATAAGACCCAGGATAGAATTACTAGTAGGACACAGAGGACAGGACTCATGATAATGTTGTAATGCAGGGGATGACAGATGGCCACATACCTGTCATAGGCCATTGCAGTGAGAAGGAAGCTGTCAAGACCaccaaataataagaaaaagaattccTGAGAAATGCACCCAGCATATGAGATGGACTGACTCTGTGTCAGCATATTCATGAGCATCTTTGGAGCCGTGACTGATGAGAAAGAGATGTCGGTGAGAGCCAAGTggctgaggaagaagtacatgggggtgtggaggtGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGACCAGGAAAAGGGTGTAGTACATGCCTTGCTCCTCCTTCTGGATAGGGAGGCCCAGGAGGATAAACTCAGACACACTGCTCTGATT

a score=17698
s chr3           97410253 887 + 160039680 CCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGT---CTGACATAGTTGAA---GTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGA---TTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTC
s HiC_scaffold_1 51635916 887 - 233722169 CCAAGTAGATTTCTCAGAGCTCCTTTCATATCTCTATTCCTCAGACTGTAGATAAAAGGATTTAGCATGGGTGTGACCAGACTGTACAATGCAGCCACAATGACATCTTTCTC------ATTACTGTTATTGGATGAGGGGAAAAAGTAGAGCCCAATAATTGCTCCATAGTAGAGAGAAACTACACAGAGGTGAGAGCCACAAGTGGACAAGGCTTTGCAGATTCCCTTGGTCGAGGGAGCTCTCAGGATGGTGGCCCCAATGTGACCATAAGACACCAAAATGCATATGAATGG---CAAGGTAATGGCCACAGTTCCTACAGTGAGAATAACCATCTCATTCATGGTGGTGTCTGAGCTGGACAATTTAAGTAAGGCAGAGAGATCACAGAAGAAGTGGTGCAGGGTATTGTCTCTAGAGAAAGACAGTCGGAGCAGGAGAAGAGTGTGCACGAGGGCGATGGCAATGGATAAGACCCAGGACACAATAACTAGCAGGAAGCAGAGTCTCTGGCTCATGATGGTGATGTAGTGCAGGGGGTGACAGATGGCCACATACCTGTCATATGCCATCGAGGTGAGAAGGAAGCTGTCAAGACAAccaaatactaagaaaaaaaattcctgaaaaatGCACTGAGTATATGAGATGGATTGACTCTGTGTCTGCATATTCATGAGCATCTTTGGGACAGTGACAGATGATAAAGAGACATCAGAAAAGGCCAAGTggctgaggaagaagtacatgggagtGTGGAGGTGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGACCAGGAACAGGGTGTAGTACATGCCTTGTTCTTCCAGCTGGATGGGGAGCCCCAGGAGAACGAATTC

a score=24147
s chr3           97410253 905 + 160039680 CCAGTCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGA--TTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTG----TGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACC-CTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51092679 905 - 233722169 ctAGCCAATTTTCTCAAGGCATGTTTCATATCCTTGTTCCTAAGGCTATAAATGAAAGGATTCAGCATGGGAGTAACTACCGTATAGATGACAGTGACCACGCGGTTCTTTGTCACTGAGTAGGTAGATGAGGGGCGGATGTACACGGATATTATGGTACCATAGAATAGTGCTACAACTGTTAGATGAGAGCCACAGGTGGAGAAGACCTTGTACCTGCCTCCCCCTGAAGGCACCCTCAGAACAGCACAGGTGATGTAGACATAAGAGATAACAATGAAGATAAAAGGGCTCATAATCACAAAGGAGCC--CTCCATGAAGGCCAAAAGCTCATTGACAGAGGTGTCTGAGCAGGAGAGTGTCAGCAATGGCTGGACATCACAAAAGAAGTGGTGGATGACATTGGGCCCACAGAAGGAGAGGTGGCCCATGAGAATTGTGTGGATGAGTGAGTGAAGGTGAGAAACCAC----CCAGGATGCAGTCACCAGCAGGAGATAACACCTGGTGCTCATGATTGTGGTATAACGCAGTGGGttacagatggccacatagcggtcaaaggccatggcagccaggaggaaACTGTCTGTGATACCAAAGGCCACAAAGAAATACATCTGGGTGAGGCACAGGGTAAAGAGGACAGTCTTTCTCTGTGTCATCATGTTCAGTAACATCTGGGGCACAATGACAGTGGAGAAGCAGATGTCTACCAGGGATAGGTTGGAGAGGAGGAAGTACATGGGAGTATGTAGGTGGGCATCCTGCCAGATGGCTGCAATGATGACTGAGTTGCCTACAATGTTGACAAGGTACATGACAAGGAA-GCTGGCAAAAAGCCACAGCTGTTGTTTGGGATCAGTGGTGAGTCCTAGAAGGAGGAATTCGGTCACGTGGCTCTGGTT

a score=6243
s chr3           97410257 751 + 160039680 TCAGTTTTCTCAGCG-CACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAG-GTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAG-------------------------------------------GATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCA----------------------ACAGTGGCACTGGA--------------------------CACATGGAGGACAGA-----------------------------------------------------TTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATA---CTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGA----ATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAG
s HiC_scaffold_1 52866642 878 - 233722169 tcagttttttctgaGGCCTCTTTCACATCCTTGTTTCTCAGGCTGTAAATCAAAGGGCTCATCGTGGGAATCACCAGGGTGTAAAACAGCAAGGTCATTTTGTCCTGATCTAGAGAGTAGGCAGAACTGGGGCAGAAGTACATGAAGAGCATGATTTCCTGGAAGATGGGAACTGCAGTGAGGTGGGAAGCACAATGTGGAGAGAGCTTTGAACCTTCTCTTGGCAgactggatctttttttttttttttttttttttttttttggtgtttttcctttttatcggtaccagggat--cgaactcacgactgcctgc--ttgcaaggcaggcacttatgccgctgagctaaatccccagcccctgcag----actGGATCTTTAAGATTCATGAGATGATGTAGCAATTGGAGACCAGAACTCCTGAGATGATGCTCAGTTCAATGAGTCCAAAAAtcgtgaataacaccagctcatTGATTTGTGTATCTGAGCAAGG------CAGAAGTGGaggtgagtcacagaagaaatgattGATGGCATTAGAACTGCAGAAACACGATCAAAACGCCAATATATCTGTATGAA----AGCATCTGCTACTACAAACAGCTAAATACTAGCCACAAGTACAGAGCACACCCTGCTGGACATGACCATTGCATGAAGCAAGGGTTTGCTGATGGCTTTTTTCTGATCAATGGCCATCACTGCCAGCAATAGACACTCAACATCTATAAACATGCAGAAGATGAAAATCTGCAGATCCCTGCTGGAAAGGGGAATTGATTTGCCATTTGTG----AGTCCACCAGCGT-CTTGGAGTCTATTGCAGTAGA---ACAGAAGAGGTCAGAGAATGACAGGTGACTGAGAAAATAGTACACTGGAGTGTGAAG

a score=19824
s chr3           97410257 885 + 160039680 TCAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGT---GGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGT------------CACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTG
s HiC_scaffold_1 51159049 885 - 233722169 TTAATTTCCTCAAACCTCTCTTCATATctttgttcctcaggctgtagatgaaaGGGTTCAGCATGGGAGTCACTACCGTGTACATAACTGTGGCTACCCGGTCCTTCACCACTGAGTACATGGACAGGGGTCTGAAATAGACATAGATGACACTCCCGTAGAAGAGGGCCACAACGGTGAGATGGGAGCcacaggtggagaaggctttcCACTTCCCAGCTGCGGAGGGGATTCTGAGCACAGCGATGATGATTCGCAGGTATGAGAAGAGGATGCACAGAAAAGGGGTCACGATGACAGCCAGGGTCTCAGTCAT---GACCACAATCTGGCTGGAGGACGTGTCGGAGCAGGACAGTTTTAACACAGGCTGGGTGTCACAAAAAAAGTGCTTAATGACATGGGAGGCACAGAAAGAGAG-------GTGAGACATGAGTAGCACCCGGAA-----CAAGGCGTGCAGGTGGGAGATGGTGCATGAACCTAACAGCATGAGGAGGCAATGCCGTGGGCTCATAGCCGCATTGTAGTGGAAGGGGTTGCAGATGGCCATCAGACGGTCAATGGCCATGGAGGCTAACAGGTAGCTGTCAGTGTTTGCTAAGGCTATGAAGAAGTACATCTGAACCAGGCAGCCTACATAGGAGATAGCCTTTGTCTGTGAGAGTAAATTCCCTAGCATCTTGGGCACAATGACTGTTGTGAAGCAGATATCCATGAAGGATAAGTTGCTGAGGAAAAAGTACATAGGAGTGTGGAGCCTGGAGTCAGAGCGGATGGCCAGGATGATCAGCATGTTGCCTACTATGGTGACCAGGTACATGGAGAGGAAGATGGCAAAGAGCGGTGTCTGCAGCTGTGGGTTGGAAGAGAGGCCCAGGAGGACGAAGGCTG

a score=16378
s chr3           97410258 900 + 160039680 CAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTT-----GGGTCTGACATAGTTGAA---GTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAG-----AGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCAC------------AGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51454042 900 - 233722169 CAGATTTTTCAGAGCTCTTTTCATATCCTGGTTCCTCAAACTGTAGATAAAGGGATTTAGCATAGGTGTGACCAGAGTGTACAACACAGCCACAATGACATCCTTGTC-----ATTAGTGTTATTGGAAGAGGGT---ACAAAGTAGAGCCCAATAATTGCTCCATAGTACAGAGAAACTACAGACAGGTGAGAGCCACATGTGGAGAAAGCTTTGCAGATTCCCTTGATTGAAGGTAATTTCAAGACAGTGGCACCAATGTGACCATAAGACACCAGAATGCATATAAATGGTAGAGTAATA----ACCATTGATCCTACA-ATGAGAATAACCAGGTCATTGACAGTGGTGTCTGAGCTGGACAGCTTTAGTAAGGCTGAGAGGTCACAGAAAAAGTGGTGGAGCGTGTTG----TCTTCAGAAAAAGAGAGATGGGCAA--------GGAGGAGAGTGTGCACAAGGGCACCAGCACAGGACAAGACCCAGGATAGAAATACTAGCAGGAAACAAAGGCCTTGGCTCATGATCCTAGTGTAGTGCAGGGGATGGCAGATAGCAACGTATCTGTCATAGGCCATTGAAGTGAGAAGAAAACTGTCAATATctgcaaaaaataagaaaaaatatacctGAGAAATGCACCCAGCATATGAGATGGACTGACTGTGTGTCAGCATATTCATGAGCATCTTTGGAGCCGTGACTGATGAGAAAGAGATGTCAGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggaggCGGGCGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGACTAGGAACAGGGTGTAGTACATGCCTTGCTCCTCCTTCTGGATAGGGAGCCCCAAAAGGAGGAACTCAGATGCACTGCTTTGATT

a score=20124
s chr3           97410258 900 + 160039680 CAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTG-----GGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCA--ACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGAT----TTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51600027 900 - 233722169 CAGATTTCTCAGAGCTCCTTTCATATCCCGATTCCTCAGACTGTAGATAAAAGGGTTTAGCATGGGTGTGACCACGTTATACAACACAGTCACAATGACATCTTTGTCC-----TTAGTATTACTAGAtgaaggtaaaaaataaatggcAATAATTGCTCCATAGTAGAGAGAAACAACACAGAGATGAGAACCACATGTGGACAAGGCTTTGCAGATTCCCTTAACTGAAGGAGCCCTCAGAATGGTCACCCCGATGTGCCCATAAGACATCACAATGCATATGAATGG--CAAAGTTATGACCATGGTCCCCACTATGAGAATGACCATCTCATTGACAGTGGTGTCTGAACTGGACAGCTTGAATAAGGCAGAGAGGTCACAGAAAAAGTGGTGGACAGTGTTGTCTCTAGCAAAGGAGAGAAAGGATAAT----AGAATTGTATGCACAAGGGCATTGGCAATGGATAAGACCCAGGACACAATTACTAGCAGGAAGCAGCGTCTCTGGCTCATGATGTTGGTGTAGTGCAGGGGGTGACATATGGCCACATACCTGTCATATGCCATTGAAGTGAGAAGGAAGCTGTCAAGACCTgcaaacaatgcaaaaaaatatGACTGGGAAATGCACCCGGCATATGAGATGGTTTGCTTCTGAGTCAGCATATTCATGAGCATCTTTGGGGCTGTGACTGATGAGAAAGAGATGTCAGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggaggCGGGCGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACGTGACCAGGAACACAGCGTAGTACAAGCCTTGTTCTTCCGGCTGGATGGGGAGCCCCAGGAGGATGAACTCAGACACACTGCTCTGATT

a score=20474
s chr3           97410258 900 + 160039680 CAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTG-----GGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACA-----GGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51581519 900 - 233722169 CAGATTTCTCAGAGCTCCTTTCATATCCCGATTCCTCAGACTGTAGATGAAGGGGTTTAGCATGGGTGTGACCACGCTATACAACACAGTCACAATGACATCTTTATC-----ATTAGTGTTATTGgatgaggggaaaaaataaatagcaataattGTTCCATAGTACAGAGAAACAACACAGAGGTGAGAACCACACGTGGACAAGGTTTTGCAGAATCCCTTGACTGAGGGAGCCCTCAGAATGGTGGCCCCAATGTGTCCATAAGACATCACAATGCATATGAATGGCAGAG--TTAAGACGACAGT--TCCTAGA-ATGAGGATGACCATCTCATTGATAGTGGAGTCTGAAGTGGACAGCTTGAGTAAGGCAGAGAGGTCACAGAAAAAGTGATGGACAGTGATGATCCtatcaaaagagagaaaggatAATAGAGTTGTATGCACAAGGGCATTGGCAATGGATAAGACCCAGGACACAATTACTAGCAGGAAGCAGCGTCTCTGGCTCATGATGGTGGTGTAGTGCAGGGGGTGACATATGGCCACATACCTGTCATATGCCATTGAAGTGAGAAGGAAGCTATCAAGACCTGCTAATAGTACAAAAAAATATACCTGAGAAATGCATCCAGCATATGAGATGGACTGACTCTGTGTCAGCATATTCATGAGCATCTTTGGAGCCGTGACTGATGAGAAAGAGATGTCGGTGAGAGCCAAGTggctgaggaagaagtacatgggagtGTGGAGGTGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACCGTGGTCAGGTACATGACCAGGAACAGGGGGTAGTACATGCCTTGTTCTTCCAGGTGGATGGGGAGCCCCAGGAGGATGAACTCAGACACACTGCTCTGATT

a score=25345
s chr3           97410258 904 + 160039680 CAGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCC------------CATGTC------CAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGG-CAGGGACTC--AGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTG---AGTCACAG-AATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTG---TGATTGGTC
s HiC_scaffold_1 56287789 925 - 233722169 CAGGTTCCTCACGGCAGCCTTCACGTCCTTGTTTCTCAGGCTGTAGATGATGGGGTTCAGCATGGGGGTGACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTTCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAAGTGGAGAAGGCCTTTTTCCTGCCCTCGGCGGAGGGAATCCTCAGGATGGTGGTGAGGATGAAGACATAGGAGACAAAGATGAACAGGACAGGCACCCCTAGG---AAGATCACATTGGCCACCCCCATGCTGATCACATTGACAGAGATGTCAGCACAGGCCAATTTCAAGACAGCCAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAGGGAAGTTGCATTGCTAGAGATGTCTGTACAGTGGCAGTAATACTCCCGGCCGC----CCAGGAGCTGATGGCCATGGGCATGTAGGCAGCCTTGCTCATGACCACAGGGTACCTGAGTGGggtgcagatggccacatagcgatcAAACGCCATCATGCCCAGGAGCACACACTCTGTGGC-TCCCATGGCAAAGGACAGAAACATCTGCACAGCACAGCCTGAGAAGGAGATGGTTTTCCTGGGAGTGAGGAAGCTGTCAAGAATGAGGGGGACAGAGGAGGTCGTGTAGCAGACGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggtgtgtgCAGGTGGGAGTCAAGGATGGTCACCAGGATGAGGACCCCGTTGCCTAGCAGGATCACCAGGTACATGGCCAGGATGAGCACGAAGAATGTTTTCTCCAGTTTTGGGTGGGCTGAGAGGCCCAAAAGAATGAATCCTTGTACAGGGGAGGTCTCATTGGTC

a score=17095
s chr3           97410259 878 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACT---CAGGCCAACAGTGGCACTGGACA-CATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACA-----------CAGAGTAAGTGTGCTTGTCAATA---CTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGA-AGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTG-TGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATC---CCAGGAAGATGAA
s HiC_scaffold_1 71378508 878 - 233722169 AGTTTTGTCATGGCATCTTTGACCTCCTTGTTTCTTAAACTGTAAATTATGGGGTTCAACATAGGAGTAAGCACTCCATAAAGCAATGAAATGATTTTGTCTATTTCTTGTGAGTTTGATGAAGAAGGCTTTAGGTACATGGAGAGGGCAGCCCCATAATATAAAATCACCACAGTCAAGTGTGCACCACAAGTAGAAAAGGCCTTGTTTCTTCCCTCTGCCGAGCTTATTCTCAGAATAGTGGAAAGAATGAAAACGTAAGAGATGCAAATGAAGAGCATTGGAATGGGCAGGAGGAGAATG---CTGACCACCATCATGATCACATCCATGAGCAGTGA-ACTTGTGCAAGCTAACTTTAGCACAGCCAGAATTTCACACGTGAAGTGATCAATAAGATT---CCCACAAAGGGTGTCTTCAGAGCAAAACTGCTTTCCAGGAGGGCCGTCTAGGC--------------AGCCCGTCATCCAGGAAACGCTggccatctgaacacaaacctgCCGACTCATGATGATGGGGTATCTCAGTGGGTTGCAAATGGCCACATAACGGTCATATGCCATCACAGCTAGCAGAACGCACTCTGTG-GAGCCCATGGCAAGGGAAAGATACATCTGTATAGCACAGCCAGCCAAGAAAATTGTCTTCTGGGATGACAGCAAGTTTACCAACAAAGTAGGAATAGAAGCAGATGTGTAACAGATATCCATGAAAGCGAGGTTTccaaggaagaagtacatgggtttTTGAAGACGAGAGTCTAAAACAATGATTAAGATAA-GAGTGCTGTTACCCAAGAGGGTAATCAGATACATCATGAGGCTGAAGATGAAGAGAACAACTTCCAGCCTCGGATATCGAGAAAATccctccaggaaaaaaaa

a score=20656
s chr3           97410259 908 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGC---AGGGACTCAGGCCAACAGTGGCACTGGACACATG-GAGGACAGATTCATTGA------------------CAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAG---TGTGC--TTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCC---ACAGAGCCAGGATCCAGTCACCA--AGCTGATACAGACCCTTGTG--CTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCA-----CATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGA-GTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTC
s HiC_scaffold_1 51065099 908 - 233722169 AGTTTCCACAAAGCTCGCTTCATGTCTTTGTTCCTTAGGCTGTAGATAAAAGGGTTCAACATTGGGGTGACCATTGTATATACAATGGATGCCACCATTCCAGTGTCTGCTGAATAGGAGGATGATGGCTGGAAATACACTAGAAAGACTGTTCCATAGAAAAGAGAGATCACTGTCAAGTGAGAGCCACAGGTGGAGAATATCTTGTGCTTTCCCCCAGCAGAGCGAATCCTGAGGATGGTGTGCATGATGTGGGCATAAGAGAC--CAGGACACAGGTGAGAGGGACC--------------------ACACCTGAGAGGGCAGCTTCAGCAAACATCATGAACTGAAATGTATGGGTGTCTGAACAGGCGAGCTTGAGGAGTGGGGTTACATCACAGAAAAAGTG--TGGGATGGTGTGGGAGGCACAGAAGGAGAACTGAGCCATCATCGA-AGTGAGTGA-----AAAGGCCAGCAGGTTGGAGCAGAAAAAGGATGTGGCCACCAGCAGCAGGCATCG----TTGAGGACACATGATTGCTGTGTAGTGTAGAGGAagacagatggccacatagcggtcatatGCCATCACAGCCAGCAGGA---AGTCA--TCCAGCAGGGCCAATGCCATGAAGAAGTACATCTGCACAAGGCACCCAGTGTGGGAGATGGTGTGGCGCTGTGTGTGGATGTTCACCAGCACCTTGGGGATGATGGTGCAGGTGAAGCAGGTATCGATGAAGGAGAGGTTGgccaggaagaagtacatgggggtgtggaggtGCTGGTCAGAGCC-AATGGCCAGAATGATGAGTATATTTCCCAGCAGGGTGGTCAGGTGCATGCTCAGGAAGAGCCCGAACAGGAGAGGCTGCTGCTCTGGGTATTCAGAGAAGCCCAGGAGCAAGAAATCAGCGAGTCTGCTTTGGTTGCTATTTTC

a score=18381
s chr3           97410259 899 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51540369 899 - 233722169 AGATTTCTCAGAGCTCCTTTCATATCCCGATTCCTCAGACTGTAGATAAAAGGGTTCAGCATGGGTGTGACCACGTTATACAACACAGTCACAATGACATCTTTGTCCTTAGTGTTACTagatgaagggaaaaaataaatagcaataattGCTCCATAGTAGAGAGAAACAACACAGAGGTGAGAACCACATGTGGACAAGGCTTTGCAGATTCCCTTGACTGAGGGAGCTTTCAGAATGGTGGCCCCAATGTGCCCATAAGACATCACAATGCATATAAATGGAAGGGTTATGACTATGGTTCCTGCTACGAGAATGACCATCTCATTGATGGTGGTGTCTGAACTAGACAGCTTGAGTAAGGCAGAGAGGTCACAGAAAAAGTGGTGGACAGTGTTGTCCctagaaaaagagaggaaagataaTAGAGCTGTATGCACAAGGGCATTGGTAATGGATAAGGCCCAGGACACAATTACTAGCAGGAAGCAGCATCTCTGGCTCATGATGGTGGTGTAGTGCAGGGGGTGACAGATGGCCACATACCTGTCATATGCCATCGAGGTGAGAAGGAAGCTGTCAAGAGCTGCAAACATTGCCAAAAAATATGACTGGGAAATGCACCCAGCGTATGAGATGGATTTACTATGAGTCAGCATATTCATGAGCATCTTTGGAACTGCCACTGATGAGAAAGAGATGTCAGTGAGAGCCAAGTggctgaggaagaagtacatgggagtGTGGAGGTGGGAGTCCAGCCTGATGAGCAGGATAATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGACCAGGAACAGGGCGTAGTACATGCCTTGTTCTTCCGGCTGGATGGGGAGCCCCAAAAGGATGAATTCAGACACGCTGCTCTGATT

a score=19618
s chr3           97410259 899 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTG-----GGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCA--ACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACAC-------AGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51567338 899 - 233722169 AGATTTCTCAGAGCTTCTTTCATATCCCGATTCCTCAAACTATAGATGAAGGGATTCAGCATGGGTGTAACCACGCTATACAACACAGTCACAATGACATCTTTATC-----ATTAGTGTTATTGgatgaggggaaaaaataaatagcaataattGTTCCATAGTACAGAGAAACAACACAGAGGTGAGAACCACATGTGGACAAGGCTTTGCAGATTCCCTTTACTGAGGGAGCCCTCAGAATGGTGGCCCCAATGTGCCCATAAGACATCACAATG--CAGACAAATGGAAGGGTTATGACTATGGTTCCTAAAATGAGGATGACCATCTCATTGACAGTGGTATCTGAACTGGACAGCTTGAGTAAGGCAGAAAGGTCACAGAAAAAGTGATGGA---GAGTGATGTCCCTCgcaaaagagagaaaggataAT----AGAGTTGTATGAACAAGGGAATTGGCAATGGATAAGACCCAGGACACAATTACTAGCAGGAAGCAGCGTCTCTGGCTCATGATGGTGGTATAGTGCAGGGGGTGACAGATGGCCACATATCTGTCATATGCCATCGAGGTGAGAAGGAAGCTGTCAATATCAGCAAACATTATGAAAAAATATGACTGGGAAATGCACCCAGCATATGAGATGGTTTTACTATGAGTCAGCATATTCATGAGCATCTTTGGAGCTGTGACTGATGAGAAAGAGATGTCAGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggaggCGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACGTGACCAGGAACAGGGCGTAGTACATGCCTTGTTCTTCCAGGTGGATGGGGAGCCCCAGGAGGATGAACTCAGACACACTGCTCTGATT

a score=14756
s chr3           97410259 899 + 160039680 AGTTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATG-----GAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAG--GAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGAT--CCAGTCACCAAGCTGATACAGACCC-----TTGTGCTCA----TGAGAACTGGATACC----------GAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAG--GCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51331894 899 - 233722169 AGTTTACCCAAAGCATCCTTCATGTTTTTATTCCTCAAGCTATAGATGAATGGGTTTAGCATAGGAATAATCACCATATAGAGAATGGAAGCCCGACTTTCTTTCTCTGTAGAGTGAGCTGAGGGGGGGAGTAGATACACACCCATAAGCGACCCATAAAAGAGAAGAACCACCGTGAGATGAGAACCACAGGTAGAGAAAGCCTTCCACCGCCCTCCAGGAGAGGAGATGCCAAACACGGCCCAGAAAATACGGGCGTAGGAGAAGACAATCAACATGAGGGG---CAGAGTGA--GGAACATCAAGCCCATGATGATGATCATCAGCTCGTTAATGTGGGTGTCGGAGCAAGCAAGCTTCAGAAGAGCACTAGGA--TCACAATAGAAGTGGGGAATAATGGTGGGGGCACAGAAAGTCACACAGGTCAGCAACAGTGTGTG--------------------CACAAGGGCAGGACAATTGGTTAGCAA-CCAACACATACCCAGCAATAGTATGCAGAGTTGAGGACTGAGGGCCACGCTGTAATGAAGTGGCCGGCAGATAGCCACAAAGCGGTCATATGCCATCACAGCCAGGAGGCAATTGTCAAGACCACCAAACAGAAGTAGGAAATATAGCTGTGTAAGGCACCCAGGGTAGGAGATGGTCTGACTCTGGGTATGAATATTGACCAGCATTCTGGGGACTGAAGCTGAACTGAAGCAGGCATCCGTTAAGGACAGATTGGCCAGAAAGAAGTACATGGGCGTATGGAGGTGTGGGTCAGCGCAGATGGCCAGGAAGATGAGCAGGTTTCCAGCCATGGTGATCAGGTACATGCCCAGGAAGGTGCCAAACAGAAGAAG--CTGGTCCTCTGGTCGTTCAGAGAATCCTACCAGGAGGAAGTCTGACGCAGGGGTTTGGTT

a score=12536
s chr3            97410261 886 + 160039680 TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGG----CAGGGAC--TCAGGCCAACAGTGGCACTGGACACATGGAGGACAGAT------TCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGA------CACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACA
s HiC_scaffold_1 227539190 877 - 233722169 tttttccatagaatttttcatctctgaaTTTCTCAAAGTATATATTAATGGATTCAGCATAGGGGTAATAACTGTGTAGAACACAGTCATTAATTTATCAA----CAGGAA--AGTTGGAAACAGGtctaacatacacaaaaatacagGGAACAAAAAAGAGCACAACCACGGTGATGTGGGAGCTGCAGGTAGAAAgagctttttttctcccttcctgacTGTGAGTTTTAAGAGAGTTTAGGATGA--AGC-CATAGGAG------AAGAGCAGGAGGATAAAGACCATCAAGCAGATGGCTCCAC------CATTGGCGACTACTGTCAGGCCAATAAAGTAGGTATCAGTGCACGCAAGCTCCAACAGTGGGTACATGTCACAGATGAAATGGTCAATGACATTGGGCCCGCAGAAGTGGAGACTAGACACAAAGACAAATTGAACCACAGAGTGTATAGAACCTCCAGCCCAGGATATCACCAGCAGGAGGATGCAAACTCGCTGATTCATGATGGTCAAATAGTGCAGAGGCTTGCAGATAGCCATATAGCGGTCAAGGGCCATCACCACCAGAAGGAAGACCTCAGCACCACCAAATAGGTGTCCCATAAAGAG------CTGACACATGCAGGCTTGGAAAGAGATGATATTTCTGCCACTGAGCAGGTCGATAAGCAACTTGGGTGAGAAGACAGAGGAATAAACGGCATCCATGAATGACAGACAGGCAAGGAAGAAATACATTGGGGAGCCCAAAGAGGGGCTGGTGATGACAGTGATCATAATGAGCACGTTGCCCACCATTGTTACAGTGTAGATTAGTAAAAACATGACAAATAATGCCATCTGTCCATTACGATTCTGTGTGAGACCCAGAAGGACAAACTCTGTGACA

a score=11518
s chr3           97410261 583 + 160039680 TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGA---GGACAGATTCATTGA----CAGAG---GTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGA--TCCAGTCAC------------CAAGCTG-ATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTT
s HiC_scaffold_1 52890093 581 - 233722169 TTTCTTCAGCACCTCCTTGAACTCCCTGTTCTGGAGAATGTAGATCAGGGGATTCAGCAGGGGGATGAGCACTGTGTAGAAGACCAAGGCTGCCTTGTCCGTGTCCAGGGAATGGGTAGAGCTGTGCTGCAGGTGCATGAAGGTGAGGGTCCCGTAGAATATGGTAACCACCAGCATGTGGGAGCTGCAGGTGCAGAAGGCTTTGCACCTTCCCTCAGCCAAGAGCATCCTCAGAATGACAGAGACAATGAACACGTAGGAGGTCAAGATGATCAG----------AAGCGAGAAGAAGAACATAACACCTGCACAGGCAAAAGTCTATAGATGTTTGGAGCGAGTGTCTGATCAAGCGAGCCTGAGCAGAGGCATGTTATTGCAGTAGAAGTGATTGATGACGTTGGGGCTGCA-GTAGCAGAGGCG--------------GAAGGTCATGGTGGCC-CCGAATAATACAACCGGGAAGTTTAGCCATAGAGGACAACTACAAGCTGCACACAGATGACTGGAGACATGACAACCATAAAGAGCAGAGGGTTACAAATGGCCACATATCTGTTGTAGGTCATGGAGGCCAA-AACAAGCACTCAGTT

a score=20288
s chr3            97410261 903 + 160039680 TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTG---AGTCAC----AGAATTCA-CCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTG-ATACAGACCCT-TGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCAT
s HiC_scaffold_1 227461547 903 - 233722169 TTTTCTCATTGCTTCTTTGACATctttgttcctcaggctgtagatgatGGGATTCAGCATGGGAATGATGATGCTGTAGAATATGGACACTGCCATGTCATGCTCCAGGTTGTAGCTGGAACTTGGTCTCACATACATGAAAAGAACAGTTCCATGGAAAATGGACACTGCAGTGAGGTGAGAGCCACATGTAGAGAAgacctttctcctcccttctgcAGAGTGTGTCCTGAGAACAGCTGACAGGACAAAGCCGTAAGAGATTAGGACAATTAGTACAGTAAACATCTCAATAGAACCAGCAAAGTAAAAGAGTAGAAGTTGATTTGTGTGAATGTCAGAGCAAGAAATCGCGAGCAGGGCAGGGATGTCACAGAAGATGTGTTGGATTACATTAGATGCACAGAAGGACAGACTGAATGTGGCCATTGTGTGCACAGTGGCATGTAGAATCCCTCCAAAGCAGGAAGCAAGGAT---------AAGTGGCACAAAGACCCTGCGTGC-CATGCTGACAGAATACAGGAGCGGgttgcagatggccacatagcggtcataaGCCATTGCTGCCAAGAGAAAGCATTCTGTGGTTCCAAACAGTACAGCTAGAAACATCTGCACTGCACATCCAAGGAGTGGAATGACTTTGTCCTTTGACATGAAATCTACCAACATATTTGGGGTAATCACCGAAGAATAGCAGGCATCCACAGAGGACAAGACACTCAGAAAATAGTACATCGGGTTGTGCAACCGTGAATCCACAATGACTAGAACAATCAGTCCTAAATTTCCTAGGAGAGTGAAAAGGTAAACTGCTAGAAATAGGAAAAAGAGGACGAGCAGCAGCTCAGGGTTGTCAGTGAATCCCTTCAGCACAAATTCAGTGACTTCGGTGAGATTCTTCAT

a score=17832
s chr3           97410261 897 + 160039680 TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGA---GCCTGCAGTGAACAGGCAG------GGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACA--GATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAAT---GGGA----CATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACC---AAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAA-----GAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 52874153 897 - 233722169 TTTCTTCAGGGCGATTTTTACCTCTTGATTCCTCAAGCTATAGATCAGTGGGTTTAACATGGGAATCACTATCACataaaacacagatgaaattttATCTCTGTTCAGAGAGTGGGTTGATTTAGGCTGCAGGTACATAAAGCTAATTGTCCCATAAAATATTGAGATAGAGGTCAGGTGAGAGGCACAAGTAGAAAATGCTTTCTGTCTTCCTGCAGTAGAATGAATCctcaggatagctaagatgataaATGCATAAGAAGTGCCCACGATCACTAGAGAGCAAAGGGTATTGAAGCCTGCAATG-----------ATGAACAACATGAGCTCTTTGACGTGAGTGTCAGAACAGG-------CCAGAGCAATTAAGGGAACATCATCACAGTAGAAGTGGTTGACCATCTTGGAGCCACAAAAAGATAGCCGAAACGTGGCCACAGTCTGA---ACAAGACCCACAGTGAATCCATATATGTACATGCCAGCAATCATCTGAACACACAGTTTTCTAGGCATGAGAATGGCATAAAGCAGGGGGTTACGTATGGCAACATAGCGATCGTAGGCCATGATGGAGAGCAGGTACATTTCACACACTGCAAATGTGATGAAGCAACACACCTGAA-----CAGCACATGCAAAAAATGATATGCTTTTAACTACACACATAAAGTTCACCAGCATGTTTGGGGTGACAGAGGAGGTAAAACAAAAGTCAATAAAAGACAGGTGACTAAGAAAAAAGTACATTGGTGTGTGCAGCAAAGGACTGACATGGATTAGCACAATCAGTCCAAGATTCATGGTCACACTGACTAAGTAGACAACCAGCAACACACCAAAGAGAATGACCTGAAGCTCTGGATTGTCTGTGAGCCCCAGGAGGATGAATCCAGACACTGATGAGTGATT

a score=21152
s chr3            97410261 976 + 160039680 TTTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCA------GGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCA-GGGACTCAGGCCAACAGTGGCACTG-GACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACA---TCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGT-GTGAGTCA---CAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACC------CTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTCAAATGGAGTCATTGCTACAGAG----------AACAAAGGATCGAGAG-TAAA-TATGTACA-----GAAGATACTGACAAACATGG
s HiC_scaffold_1 117335439 990 - 233722169 tttctTCAGAGCTTCATGGATGTCTCTATTTCTTAAGCTATAGATGATAGGGTTGAACATGGGTGTTAGGATGGTGTACAGAAGAGAAACC------CCCTTGTGTAATAGCTGGGAAGAGTTGGCAGAGGGAACAAGGTATGTGACTATCAGTGTACCATAAAACACTATGACCACAGTGAGGTGGGATGAGCACGTGGAAAAGGCCTTTTTCCGACCTGTAGCAGAAGGAATTCTTAAAATAGCAGTGAGAATGCAGGAGTAGGAGACCATGATGAGAAGAAATGGAACCAAAGTCACTATTGATGAGGTGACAAATGCAG--TGGTCTCAGTCAGTGAGGTGTCCATGCAGGAGAGAT---GGACCAGAGGGGTAAAGTCACAAAAGAAGTGATCAATTTCATTAGGTCCACAGAAGGTTAGCCTACACAGCAAAACCATAGTGATTGATGTCAGAAGG----AAACAGCAGAGCCAAGATCCAGTAGCCAGACTGATGCAGAAGGAGCCAGTCATGAGGACTGGATAGTGGAGAGGTTGACAAATGGCCAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCAGTTGCAGCCAGAGATCCAAAGAAGTAGAACTGTGCCAGACAACCAGTCACAGAGATGGTCTTCGGTTCAGCAATGATAATTAGTAACATTTTGGGAACAATGTTGGATGTATACCAGATCTCCAGAAAGGACAAATTTAccaggaaaaagtacatgggggtgtggaggGGATGGTTAATCAAAACTAAGAGGACAATGAGGATGTTCCCAGAAATAATCAAGatgtagaaaactaaaaatatcataaaaaggGAAACATTTATCTGTAGGATAGA------AGAGAATCCTCTAAGCACAAATTCCACTATTATTGTTTGGTTTTCC---TGGGGTGGAATCACCATAACACGGCTGCCCTAGAAGCAAAACATCCAGTGATAAATTATGTAAAATGTGGAAGGTATTAGCTTACATAG

a score=17843
s chr3           97410262 904 + 160039680 TTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTG--GGTCTGACATAGTTGA---AGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACA-----GGCAGG-----GACT--CAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAA--GTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAG-AC--ACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTT
s HiC_scaffold_1 51441728 904 - 233722169 TTTCTAAGAGCTCCTTTCATATCCTGATTTCTTAGACTATAGATAAAGGGATTTATCATGGGTGTTACCAGAGTGTACAACACAGCCACAATGACTTCATTGTC-----ATTAGTGTTATTGGATGAGGGGAAAAAGTAGACCCCAATAATTGCTCCATAGAACAGAGTAACCACAGAGAGATGAGAACCACATGTGGAAAAGGCTTTGCAGATTCGCTTGACTGAAGGAGCTCTCAGGATAGTGGCTCCAATGTGGCCATAAGAGACCAGAATGCATATAAATGGAAGGGTTATGACTACCACTCCTACGGTGA------------GGATTACCAACTCATTGATGGTGGTGTCTGAGCTGGAGAGTTTAAGCAATGCAGagaggtcacagaagaaatgtgGCAGAGT--GTTGTCACCACAGAAAGAGAGATGGGATAGGAGAAGGGTGTGCACCAGGGCACTAGTAGAGGACAAGACCCAGGACACAATTACTAGCAGAAAACAGAGGTTCTGACTCATGATTGTGGCATAGTGCAGAGGATGGCAGATAGCCACATATCTGTCATAGGCCATTGAGGTGAGAAGAAAACTGTCAAGATCaccaaacaataagaaaaaatatacctGAGAAATGCACCCAGCATATGAGATGGATTGACTCTGTGTCAGCATATTCATGAGCATCTTTGGAGCTGTGACTGATGAGAAAGAGATGTCAGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggaggCGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGACCAGGAA---CAGGGTGTAGTACTGGTCTTGCTCTTCCAGATGGATGGGGAGCCCCAGGAGAAGAAATTCAGAACCACAGCTGTGGTTATTCCTCT

a score=15519
s chr3           97410262 899 + 160039680 TTTCTCAGCGCACC-TTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGG-GAGTAGCCTTCCTTGGGTCTG-------ACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTC---AGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGA-AGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGT
s HiC_scaffold_1 51362583 893 - 233722169 TTTCCCTAAGCACTGTTTCAGGTCTTTATTTCTCAGACTGCAGATAA-AAGATTTAGCGTGGAGGACAAAACTGTGTAGACTACTATTGCTATGTGGTCCTTGACAGTGTAAGTGGACAC-----GGGATGCAAATACACATAGAAGATGCTG------CCATAAAAGAGTACAACCACAATGAGATGAACACCACATGTAGAGAAGGCTTTGTGCTTCCCAGAAGCAGAGGGAATCTTGAGAACTGTGATGAGGATTTGTATATAAGACAAAGTGATGCATAGGAAGGGGGTCTCCAAAACAACAGCTCCTTCTGTTATC---ATTACAATTTCATTGACAAAGGTGGGGGAGCAGGACAATTTCATCAGGGGACTGATGTCACAGAGAAAGTGGTGGATAACGTTGGAGTCACAGAAGATGAGAAGATTCAGCAGCAGTGTGTGCAGGAGAGAGTGGAGGTGAGGAAATGTGCAGGAGAAGACTGCCAGCAGGGCACAGCAGCACTGGCTCATGGTGGTGATGTAGTCGAAGGGgtgacagatggccacatagcggtcaaaGGCCATGACTGCCAGAAGGAAGCTGTCACTGTT-GCCCAAGGCatgtataaaatacatttgtgtCAGACAGCCAGCATAAGAGATGACTTTCCTTTCTGAGAGAAAGTTCTCCAGCATT-TGGGGATGATGGTTGTTGTGAAGCAAATATCAGagaacaacaaa-aatttaagaaaaaatacatggagatctGGAGATGGGCATCAAAGCGGATGGCCAGGATGATGAGCAGTTTCTCTAATATGGTGATCAGGTAAATGGTGAGGAAGAGAATGAAGAGTGGCCTTTGGTCCTCAGCCCGAGAGGTAAGTCCCAGGAGAATGAACTGAGAGACAC-TGTTGGTTTGGT

a score=18106
s chr3           97410262 896 + 160039680 TTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGG-GTCTGACATAGTTGAAGT----TGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGG-CACTGGACACATGG--AGGACAG---ATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATT
s HiC_scaffold_1 51515177 896 - 233722169 TTTCTGACAGATCCTTTTATCTCCTGATTCCTTAGGCTATAAATGAAGGGATTCAGCATGGGTGTGACTATGGTGTATAACACAGCCACAATGACATCCTTTTC-----ATTAGTATTATTGGAAGAGGGAAAAAAGTAGAGCCCAATAATTGTTCCATAGTACAGAGAAACTACACAGAGGTGAGAGCCACACGTGGACAAGGATTTGCAGATTCCTTTAATGGAGGGAGCTCTCAGGATGGTGGCCCCAATGTAACCATAAGACACCAGAATGCACATGAAAGG---CAG---AATAGTGAACACCAGTCCTACGGTGAGAACAGCCAGTTGGTTGATAGTGGTGTCTGAACTAGATAGTTTAAGTAAGGTGGTGAGGTCACAAAAGAAGTGGTGGAGaatgttgtttttaaagaaagagagatggGCTAGAAGGATGGTGTGTAGAAGAGCATTGGCAGAAGATAAGACCCAGGGCACAGTTACTAGAAAAAAGCAGCGTCTCTGGCTCATGATGATGGTGTAGTGTAAAGGGTGACAAATGGCCACATATCTGTCATAGGCCATTGAGGTGAGAAGGAGGTTGTCAAGACctgcaaacaacaaaaaaaaatatacctGACAAATACACCCAGTGTAAGAGATGAACTGACTCTGCATCAGCATATTGATGAGCATCTTTGGAGCCGTGACTGATGAGAAAGAGATGTCGGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggaggtGAGAGTCCAGTCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGACCAGGAACAGGGTGTAGTACAAGCCTTGCTCTTCCAGCTGGATGGGGAGCCCCAGGAGGATGAATTCAGACACACTGCTCTGATT

a score=20049
s chr3           97410262 905 + 160039680 TTTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATG------------TCCAGG---GAGTAGCCTT---CCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAG-ATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTG---TGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTC
s HiC_scaffold_1 65481722 923 - 233722169 TTCTTCACGGCTGCTTTCACATCTTTGTTCCTCAAACTGTAGATAAGTGGATTGAGCATAGGTGTCACCACGCCATAGAAGAGAGAGATAATTTTGTCTCTGAGTTGTTCTTTGTCTGCGCCAGAAGAGTCTTTAGCCTTAGGTTTAGCATACATGAAGAGGATGGTCCCATAGAATATAATAACCACTGTTAAATGGGCAGAACAGGTAGAAAAGGCTTTGCGTCTCCCCTCTGCAGAAGGAATCCTCAGAATGGTGGAGAGAATGAAAACATAcgagacaaaaatgaaaagtacTGGGCCCACAAGAAAAATCATGTTAGCAACAGCCATGCTAATAACATTCATGGAAATATCAGCACAAGCCAATTTTAAGACAGCCAAGATTTCACAAGTGAAATGATTAATGACATTATCCCCACAGAAAGGAAGCCGCATTGCAAGAGAAGTCTGCAACACAGAGTTGACACCTCCTGCGATCCAGGACCCAGCAGCCATGGGAACGTAGGAAGCCTTGCTCATGATGATGGGGTATCTCAGAGGGttacagatggccacatagcggtcaaaTGCCATCATACTTAGAAGGACACACTCTGTGGC-TCCCATagcaaatgaaagaaacatttgtACTGCACATCCAGAGAAGGAAATGGTCTTCTTTGACGTTAAGAAACTACTGAGGAATAGGGGAATAGAAGAACTAGTGTAGCAGATATCCAAAAATGATAAGTTACTGAGGAAAAAGTACATAGGGGTGTGCAA---ATGGGAGTCATAGACACTCACAATGATGATAACACCGTTTCCCAGCAGGATCACCAGGTACATACACAGGACCAGAACAAAGTAAATGGCCTCCAGCTCTGGGTAGCCAGAAAGTCCCAGCAAGACAAATTCTGTCACAGAAGACTGATTGGACTTTCC

a score=19288
s chr3           97410263 886 + 160039680 TTCTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCT---------GTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAG--GACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCT--CCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGA---AGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACG
s HiC_scaffold_1 51643838 884 - 233722169 TTTCTAGggcttgttttatatttttgttcctcaggctgtaaaTGAAAGGATTTAGCATGGGTGTAACTACTGTGTAAATGACAGAAGCAATTATGTCCTTGTCACTGGAAT--------TTCGCGATGA-AGAGAAAAAGTAGACTCCTGCAAGTGTCCCATAGTATAAAGACACCACAAAGAGATGGGAACCACAGGTAGAAAAGGTTTTATAGACTCTCTTAGTAGAAGGAAACGTTAGGACAGTGATTCCTATACGGATGTAAGAGCCCAGAATGC-TACTCAAGGGC-AAGATGAAAAGCATTCCTCCCTCGGTGAAGATGACCAGCTCATTGAGGGAGACATCTGAGCAACTCACCTTCAAGAGAGCAGTGAGGTCACAGAAGAAGTTGGCAATAATATTTTCAGCACAGAAGGACAGTCTGGCCAAAAGAAAAGTGTGCAACAGGGCAtgggcaaaagagaaaaaccaggaCCCAGCTACTAACAAGACACACAGCTCCTCTCTCATGATAGCAACATAGTGCAGTGGGTGACAGATAGCCACATACCTGTCATAGGCCATCACTGCAAGAAGAAAATTGTCAAGACagccaaacagaacaaaaaaatgcatCTGAGAAATGCACCCCTCACAGGAGATGGATTGCTGCTGAACCTGAATA--TTCACCAGAAGTTTTGGAACTGTGATAGAGGAAAGGGAAATGTCAGAGAAGGCCAAGTggctgaggaagaagtacatggggctGTGGAGGCGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGGACGGTGGTCAGGTACATGACCAGGAA---CAGGGCACAGAACACAGCCTGCTGCTCTGGCCGGATGGGGAGCCCCAGGAGGAGGAACTC--GGACACG

a score=18821
s chr3           97410265 875 + 160039680 CTCAGCGCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCC-----AACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTT------GGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAG--CTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTC
s HiC_scaffold_1 51018805 875 - 233722169 CTCAATGCATTCTTGACCTCCTGGTTGCGGAGGCTGTAGATGAGAGGGTTGAGAGCCGGAATCACCAGTGTATAGAACACAGATGCCATCTTGTCAGTATCCAAGGCGTAGCTGGAGCTGGGGCGCAGGTACATGAAGATGAGTGTTCCATATAGCATGGCCACAGCTGTGAGGTGGGAGCCACACGTAGAGGCTGCCCGCTGACGGGCCTCAGCAGAGCGCATGCGGATCACAGCCCCAGCGATGAAACCATAAGACACAGCAAT-----GGCCGACACTGTGGCTGTCTGGATGAAGCCACAGATGGCAAAGAGGAGGAGCTCATTGAGACTGGTATCATTGCATGAGATGGCCAGCAGTGGAGGGATATCACAGAAGAAGCTGTTGATCTCCAATGAGTGGCAGAAGCTCAGATGGAAGGTG------AAAGTTGTGTGGACAAAGGCACTCACTGCCCCACCCAGGCCTGATGCTCCCAGCAAAGCCAGACACAGACCCCTTGA--CATGACCGTTGTATAGAGAAGAGGGTTTCCGATGGCCacgtagcggtcataggccatggctgCCAGCAGGCAACACTCTGCATCTGCCAATCCTGCAAAGATAAACATCTGGAGGGCACAGGCCGTGTAAGAGATGGTGGAACGGGGCTGCAGCAAGCCCAGCAGCATCTTGGGGTTGATGGCCGAGGAATAGCAGGCATCCAGCAGGGAGAGGCTGgccaggaagaagtacatgggagtGTGGAGCCGGGCGTCCACATGGATCAGCAGCACCATGCCCATGTTTCCCAGCAGGCTCACCAGGTAGATGGGAAGGAAGACCAGGAAGAGGGTCACACGCAGGTCCCAGCGGTTTGTGATGCCCAGGAGGATGAATTC

a score=15817
s chr3           97410271 913 + 160039680 GCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTT------------------CCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTG--GCACTGGACA----CATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAG--AGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAG-ACACATTCAGTTCCAGCACATGACACAAAGAA-GAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAG--AAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTCAAATGGAGTCATTGCTA
s HiC_scaffold_1 65408218 929 - 233722169 GCAGCTTTCACATCCTTATTCCTCAAGCTGTAGATTATAGGATTCAGCATGGGGGTCACTACCccataaaataaagaaatcagcTTGTCCAAAGTTTGAAAGTTGTCCTCTCCATGCAGGGCTTGGGCCTTGGGTTTTGCATACATAAAGAAGATGCTACCATAAAATATAACCACCACAGTCAGATGAGATGAGCAGACTGAAAAGACCTTGCATCTTCCTGTGGCTGAGTTCATTCACAAGATGGTGTACAGAATAAACATATAGGAGAA-AAAATGACCAGAAGAGGA--AGAACCAGAAATGCTATATTTGATATCATCATGG------TAATAATGGTGAGAACTATATTAGCACAAGCTAGCTTGAGGACAGCGAAGATCTCACAtgaaaaatgattgaaaatattATCCCCACAGAAGGGCAATGTCATGGCAAGAGATGTTTGCACAATTGAATTTATGCCACCAGAGAACCATGACACATAAGCCATCAGTGTACATACACCACTGCTCATGATGATGGGATACCTCAGAGGgttgcagatggccacatagcaaTCAAAAGCCATCAT-GCCAAGAAGTAAACATTCTGTT-GACCCCATTGCAAATCCAACAAACATCTGCACTGCACACCCAGAAAAGGCAATG--TTTCTTCTCTTTGAGATTAAGCTCAGCAGTGTGGATGGAACAGAGGAAGATGTATAGCAGATGTCCAGGAAAGAGAGGTTCcccaggaagaagtacatgggaggGTGCAGCTGAGAATCAAAGATGCTCACTGTGATCAGAACACCATTGCCAGTTAGAATCACTAGGTACATGACTAGAATCACAGCAAAGTAAATCATCTCAGTCTTTGGGT-ATCCTAAAAGACCAAAAGAGGAAATTCTAACACAAGTGTCTGGTTAATCATACCCATGACATTCATTTCTA

a score=22966
s chr3           97410271 875 + 160039680 GCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTG------GGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTG-AGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACAT--GGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCA---GGATCCAGTCACCAAGCTGATACAGACCCTTGTG-CTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATG-ACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGAC------CCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGAC
s HiC_scaffold_1 56204437 875 - 233722169 GCGTCCTTCacctccttgttcctcaggctgtaaaTGACAGGGTTTAGCATGGGCGTGACCACAGCATAGAGGAC------TGTGAAGACCTCATCGGAGATGTGGGCCTCCTTGCTCTTGGGTTTCATGTACATGAAGATGACGGTGCTATAGAAAAGCAGCACCACCGCCAAGTGCGCTGAacaggtggagaaggctttgCGAC-GCCCTGCAGCTGAGGGCACCCTCAAGATGGTGACCAGAATGAGTGTGTAGGA-CAGGCAGATGAGGGCCAGGGGCACAGGC-AGCAGCAGGACTGCCCCCACTAGCAGGAAGGCCTCGCTGACTGACGTGTCGCCGCAGGCCAGTTTCAGCACTGCTAGGATTTCACAGGTGAAGTGACTGACCACGCGGTGGCCACAGAAGGGCAGCTTCATGGCGATGACTGTCTCACTCACTGACTtgatgagacaaaacacccaagcGGCTCCCGCCAGCA-GCAAGCACAG---CTGGTGGCTCATGAGCACAGGGTACCTGAGTGGCTGGCAAATGGCTAggtagcggtcataggccatgatGGCCAGCAGTAGGCACTCTGTGG-AGCCTGTGGACAGGCTCAGGCACATCTGGATGGCGCAGCCAATAAAGGAGATGGTCTTCTGGGACGACAAGAGGTGCACCAGCATCAGGGGCACAAAGGTGGATGTGTAGCAGATGTCCAAGACGGAGAGGTTGcccaggaagaagtacatgggcgtGTGCA------GGCGGACATCCAGCACGCTCACAGCCATGATGGCCGCGTTCCCCAGCAGGGTAACCAGGTACATGGCCGAGCACAGAGGGAAGAGCAGGCGCTCCAGAGCTGGGTAGCCTGAGAATCCCTTCAGGAAGAACTCAGAGAC

a score=19303
s chr3           97410271 876 + 160039680 GCACCTTTGACCTCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACA-CATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCA-----CAGAGCCAGGATCCAGTCACCAAGCTGATA----CAGACCCTTGTGCT----CATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAG---AAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCA---CTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACA
s HiC_scaffold_1 56196803 873 - 233722169 GCAGCTTTAACCTCTGCGTTCCGCAGGCTGTAGATGATGGGGTTTAGTGACGGTGTCACGGCCCCATAGAACAATGTGACAATTTTATCCACATT---GGGGTCCTTGGACTTCGGTCTGAAGTACATGAAGGAAATGGTCCCGTAGAACACCACCACCACCGTGAGGTGGGCAGAGCAGGTTGAGAAGGCTTTGCGCCGGCCTGTGGCAGAGGGCAGCCTGAGGATGGCAAGCAGGATTAAAAAGTAggagaggaagatgaggaggagcgGGGTCAATGTCAGAACAGCCGTGGCCACCGTTGTTGTCA-CTACATTGAGCGAGACGTCACCACAGGCTAGTTTGAGCACTGCCAAGATCTCACAGAAGAAGTGGTTGATGACATTCTGGCCGCACAAGGGGAG-----------GCGCCACACGAGG-ATGGAATGCAGC-AGCGAGTTGGCAAAGCCTGTTCCCCAGCTCAGCGCTGCCATCCGCAGGCACCTCTGCCCATGCATGAGCTCTGGGTACCTAAGTGGCTGGCAGATAGCCACATAACGGTCATACGCCATCACGGCCAGGAGCAGGCATTCTGT---AGTACCCAGCGCTAGGGTCAGATACATCTGCAGGGCACAGCCTGGGAAGGAGATGGTTTTTCGGGTTTCCAGTAAGTTAGCTAACATGAAGGGCACGAAGGAGGAGGTGCCGCAGATGTCTATGAGGGAGAGGTTACTGAGAAAGAAGTACATGGGATTGTGCAG-GTGGGGC--ACCAGGGTGATCAACCCTATGAGGAGGGAGTTCCCTAGTACAGTCATGCAATAGATGCCCAGGAAAAACCCAAACAGGACCAGCTCCAGGTCACGATGCTCCTGGAGCCCCAGCAGGACATATTCCTTCACA

a score=15087
s chr3           97410283 885 + 160039680 TCCTTGTTCCTCAGGCTGTAGATGATGGGATTAAACAGGGGGGTCACAACACAGTAGAGCACAGACACTAATATGCCCATGTCCAGGGAGTAGCCTTCCTTGGGTCTGACATAGTTGAAGTTGGCTGTTCCAAAGAAAACCACCACCACAGTGAGGTGTGAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGGGACTCAGGCCAACAGTGGCACTGGACACATGGAGGACAG--------------------ATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCACAGAATTCACCAAGCCACAGAGCCAG-GATCCAGTCACCAAGCTG----ATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCACATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAGTGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGT-----GGTT----GGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTCA
s HiC_scaffold_1 51208366 882 - 233722169 TCTTTGTTTCTTAAACTGTAGATAAAGGGGTTCAACATTGATGTTAGAACTGTGTAGTTGACTGTTGCAATTCTGTTCTTGAC---AGTATATCTGGACAAAGGCTGAAAATAAACGTAGCCAATGCTTCCATAAAACAGGCTCACCACAGTGAGATGAGAGctgcaggtggagaaggctttgCATTTTCCAGAGGCTGAAGGAATCTTGAGAACAGCAATGAGGATTCTCAAGTAAGA------AATGA--------GGATGCAGACAAATGGAAGCAT------CACAGAGGCCAGTCCTTCTGTCATGGCCACCACTTCATTAACAAAGGTGGAGGAGTGAGATAATTTCAGAACAGGGTTGACATCACAAAAAAAGTGATGGATAACATTTGAAGCACAAAAAGTGAGCTGACTTGCCAGGAGGACATGCAGGAGGGAGtggagaga-----agagaaagtgaTGCAGAAGACCAGCAGCAACATACAGCACCTGTGGTTCATAACAGTGACATAATGCAAAGGGTTACAAATTGCTACATAGCGATCCATGGCCATAGTTGCCAGGAGGTAACTGTCTATGTTTCCAAAGACCAGGAAGAAATACATCTGTGTCAGGCATTCAGCATAGGAAATGGTCTTTTTCTCTGATAAGAAGTTTGCCAGCATCTTAGGGACTATGACTGTTGTGTAGCAAATATCTGCAAAGAACAAAATGCTTAGGAAGAAATACATAGGGTTTTGGAGTTGAGGATCAGAGTGGATAGCCGAGATGATGATCAGATTGCCCAATAGGGTCACCAGGTATATGATAAGAAAG---AGGGCAAAGA------GTGGCTTCTGGTCCTCAGGTCTAGAAGAGAGTCCCAAGAGGATGAATTCCGAGAGTCTTGACACATTGCACATTCCA

a score=16892
s chr3           97410442 725 + 160039680 GAGGCACAGGTGGAGAAGGCCTTTCTCTTGCCCTGAGTAGAGGGAATCCTCAGGATGGCAGAGATGATCAGTATATAGGAGCCTGCAGTGAACAGGCAGG--GACTCAGGCC------AACAGTGGCACTGGACACATGGAGGACAGATTCATTGACAGAGGTGTCTGAGCAGGAGAGCTTCAGGAGCAATGGGACATCACAGAGGAAGTGGCTGATTTGGTTGGGGCCACACAGAGTAAGTGTGCTTGTCAATACTGTGTGAGTCAC----AGAAT-----------TCACCAAGCCA---CAGAGCCAGGATCCAGTCACCAAGCTGATACAGACCCTTGTGCTCATGAGAACTGGATACCGAAGAGGGTGACAAACGGCCACATAGCGGTCATATGCCATGGCAGCCAACAAGACACATTCAGTTCCAGCA-----CATGACACAAAGAAGAAGATCTGAGAGAGGCAGCCCTCAAAGGAGATGGTCTTCTTCTCCCTGAAGAAGTTCACTAGCATGACTGGAATGGAGGTAGATGTGTAGCAGATGTCCAGGAAGCTCAAGTTGCTGAGGAAATAGTACATTGGAGTGTGGAG-TGCAGGGCTGACCCTGGTGGCCACTATCATGAGTGTGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAGGAAGGCCAGGAAGAAGACACCCTGTAGGTTGGGGTGGTTGGAAAATCCCAGGAAGATGAATTCTGTGACACGTGTGTGATTGGTCATTTC
s HiC_scaffold_1 51088560 725 - 233722169 GAGCCACAAGTAGAGAAGAGTTTGTGTTTCCCCCCAGCAGAGGGGATCCTAAGGATGGTGTGTGTGATGTGAGCATAAGAGAC--CAGGACACAGGTGAGTGGAATCATGCCTGAGAGAACTGCTTCAGTTAACATTGTGACCTGAAAGTGAT------GAGTGTCTGAACAGGCAAGCTTGAGGAGTGGAGGTACATCACAGAAAAAGTG--TGGGATGGTGTGGGAGGCACAGAAGGAGAAC----------------TGAGCCACGAGAAGAATGAGGGAAACGGCCAGCAGGTTGGAGCAGAATGAAGATACAGCTACCAGAAGAAGGCAGCACTGGGGACGCATGATCATGGTATAGTACAGAGGGagacagatggccacatagcggtcatacGCCATCACGGCCAGCAGGA---AGTCA--TCCAGCAGGGTCAATGCCATGAAGAAGTACATCTGCACAAGGCACCCAGTGTGGGAGATGGTGTGGCGCTGTGTGTGGATGTTCACCAGCACCTTGGGGATGATGGTGCAGGTGAAGCAGGTATCGATGAAGGAGAGGTTGgccaggaagaagtacatgggggtgtggaggtGCTGGTCAGAGCC-AATGGCCAGAATGATGAGTATATTTCCCAGCAGGGTGGTCAGGTGCATGCTCAGGAAGAGCCCGAACAGGAGAGGCTGCTGCTCTGGGTGTTCAGAGAAGCCCAGGAGCAGAAAGTCAGAGACGGCAGTTTGATTTCtcatttc

a score=44906
s chr3            97416721 2673 + 160039680 CAAAGACAAATAGAAGAATAATCC---AGCAGAAGCCTTTGAAAACATTCCTGTTCAGAGCAAAGAGCACGAGGAAACTCAGATGCCTGGCTGCCTAAAAGCCAGCCTTCTGCAGGGTAATAGATAAGGATGGCCATGGAATGTCAGTTCTGACCTGTGG---ACCCTCGGTGACCCTAGCCT-----------------GGAGGGAAATGACCTTGATTTTTTTGCAATCTTCAAGTTTGGGAGACTGGCA-----------------GAAAACACAAGGGTGGTCATATGCAGAATCTTCCATGGGATTCCAAAAGGGACATTTAACTGCAAAACCACCG-CAGAGTCCCTTGCAGTCCACATGTCCTAGGTAAAAACACCTTTCTTTAACCCAGAAATGTCATTTGAGAACTACAAC---------ATGGAATGGTCTGCAGTTGGAGCTGTTGGGCTTTGGAGTTTGCAGAAGCC----------ATAGTTTGCAGATGAGGAGCAAATATGGGAACACTTTAAAGTCCATGGGTGGTGTGGACATAGTGAGAGCACTGTCTTGGTCCAGATAGGCTGAGCCATTGGCTTTATCATTTACTAAAATGACAAATTAAAGGAGTGCAGAAGGTTTGGAGAGAGGAGAGAGGAGAGAGATGTGTAATGTAGGATGATAGGTACCTATGGGATATCCACTCAGTTA--TCCTAACAGGCAGTAAAacacacacacacacatacacacacacacacacacacacacacaaacacacacTGTCCCTCAGGAGACACTAGACACACTAACACACTAATCTTTTCAAATACAAACCTGAGAGTCACTGCCTTAAAGAGAACTATTAAAGTCATGGATTTAC------------------AAGACAGAGCAAGAAAAGAGGGTTATGGTAGGAACTTTGTAACC-ATCTGAGTTGTAGGGATCATGGTTTTAAGGGGCATACCAGAAAGAGGCTTAGAGGTACCGCACACTCCCTGTGGATTAGCTGTGAGCATTGCTTCAGTATAAATCAGCAAGCTTTTAGGACCGAGAACC-ATGCATCCTCTTAGAAAG-CTTTAT--GTGGACTGTTCAATGCATGTGTACCCTTCTCTGTTTTCTCTACCAGTTGCATAGCTAGATCTAAAATTTTCTGAGTGGTGACCTGTGTCTTCTTA--------TATGAAAATGTTGATAAATTCTCTCCTCGGCTCTCATAGGTACATGCCAAGTAGGTATTCACAGAATGAAATGAAGACTTCTGTGGAAAGTAGACTAATAAATAGCGAGCAATGAATAATTTGTACATAGCCAAATTGTGAATAGTAAATGCTTTTATTACTCAGAAATTTAAAGAAAACATGGCATCTAAAGCTGTACATACTGCTTATT----TTAAATGTCTTCAAATGTGGCTTGAAGGCAATCTCTGAGAAGCATACCAACAAAGCCTTTAGTGTCTATGTTTATATACACATACAGCAGATTCAGACACACAATGATAGTATTTTTTCT-TTAATCTGATTGACTACTCTAACTTTTTGTGGATCTGGGACAACAGGTAA-CCTGATGACCAGTGGATTTTCCATAATCCTCATGATCACATTGTTTGTGTGTGGCAATAGCACTGAGTTATTATGTTCA---GAAGCCACTATGAACAAGCACCCCATATGCAGTACAGTTTGTATGAAACCATGCATGTTGAACACTTCTTGGAAACCACATTTCATTGCACATAAGCAGGTCTCCATAAAT----------CTTGACGGT-GTGTTCTCTCTCTCCCTAGTAGACATGGGTAGATTTCAT-GGTAGATAGAAAAtgagttt-------gcaaattttatatgccccagtacagggcaatgccagagccaagaagtgggagtgggtgggtaggggagtgggggcggggaggg-tataagagactttcaggatagcatttgaaatgtaaatgaaggaaatatctaataaaa---ttttgaaaaaaaaGAAAATGAGTTTTCTTAGGTTCAGTC-----TATACACAAAGTAGGACAACTTGACAGAAACCATGTTGGTTTTAGTTTAAAAGAGGTATGTACCTCTTTAAATATTAAAAT---GAGTTTACTAAAACTATCCCACCAAAATCACAAAAT-AAACTCAACAAATAAATGAAATAAAACCTAGCTTAAGATACTTAGA--------TTCAACTAGAATCTTCCAAACTGGGTG---ATGGAGACATAATAGTGGGTCACAGTGGCCAGCACTCAAGAAATGCCTTCTCAGCTAATTTGAGGTGTCTACAGTATTGAAGGAAACAGACTGGGCATAAAATAAGCCAAGGTAATATCTGTGGTGATT----ACATCCTTTGAGCAGAA---GGAAATGATACATTCGCTCATATCTGATTCCAGCTATGCAAATTAATGA-------TTTTAAATTTAATTTGCATGGCACC---AGGAAAATTGCTTTTCTA-------------CTTAACAATATTCAGGAGAGTTTTTTTTTTCCCTAAAAGAAAATCTAGAAGATTTCAGATGTTTGTGGCCAAGCTGATTTATTGTCTTC----GGACAGAAACTGCTTTCACTTTCACTTGGGTTACTGCTTGGACCCCTTCACATGATACAAGCATGCTGGGCCAGATGAAACATTTGAATATCAT---ATAGATGAGTGTCTGTTAAACTTTA-TATGCAAATTCAGACTATTTCCATCAGGTGA----GGTGAAGGGATTCCCTCCCATCTCATGAGCCTATGGCTTAATGATAAATTTGCCTTCTTGTTCTCATCTGTGCAGCTTTGG
s HiC_scaffold_1 107164347 2621 - 233722169 caaaaataaataaataaatattcctaTAACAAGAGACTCAGAAAATATCCCCTCTCTCCTTGTGGA-CATCAGGAAAT---GAAGTCTGGCTGCCCAAAAGCCAGGCTTTGGTGTAGTAATAGGCAGAGATGGCTACTAA----TAATGACCACCTAGGACATATTCTAGGTGAAGGTAGACTCAAAACAGAGGCCATATTAAGGGAAATGGCCTAGATTTTAG-AAAAGCATCAGCTTTGAGAAACTGACCAAGATCTACAGAATTCTGAAAATACATGTATACCTGTGCTCAGAATCCGTCATGTAACTCCAAAGGGACCATATAGTTGTGCACCCATTTTCAGAGTCCTTTATAGTTCACGTATCTTAGGCTAAAACACCTTGGTTTAGTATGAGATTA--GTGTGACAATTAAAACCAGGTCAGAATCAAATGGCCTGTAACAGAAAATGTCATATTTTAGAGGTAGCAGAAGATCTctgaagaaacagttcatagaaAATGAACCAATGTGATACCCTTT--AAGTCTCTATGTGGTGAAAACATGGTGAAGG---------------GATGGTGTGAATCATAGA----ATAATTTGCTAAGATAGAAAGTAAGTAAGGTGTAGCAGGCTTA-AGAGAGGAGATAGGGGAGATTTGAGTAATGTGGAATGCTGAGTACTTGTGGGATATCCATGGAGGAAATTCCCAATAAGCAGTAGAACATACACACCCAATCCCA-------------------------------------CCCCAGAAGACAGGAAATAC--------------CTGTTTAGATACAGATTTTGGAGTCATTGTCTTAAAAGGGACTCTTGAAACCATAGATGTACCTGGAATTTCCAAAAAATAATCTAGAGTGAGAAAAGATGGCTAAGGTGGAGCTTCTGTAATTGAAAAGGTTTACAGGGATTATGG-TATAAGAGTTATCGAGGAGGGAAGTTTA---------CCAACACCCACTAGGTTTGCTGTGGGCATTACTTCGCTGTAAGGTAACATTCTAGGTGGGCTAGGAACTGATGTACCCCTTCAGAAAATCCTTATCAATATACCATGTGATATGGGTGTA--CtactctgttttctttataaatcgCATAAATGGAAGTAAAA-------ATGAGCAACATGCATTTTCTCAACTTATGCCACGGAAAAATTGGATGCTACAGACCT----TTTTAGAGGTAGAT------TAGTAGTTTCAAAACCCATATAAAGTCCTTCATGAGAGACAGATTCAAAAAGTGAAAGCAATATACAATCTGTGTAAAACTAAATtgtaaa-agt-gatttttttaatgttcgGGGTTT---AAACATTATAGCTTCTTAAGTTGCATATGTTGCTTACTTATATTAAATATcttgaa-------------------------------------------------------------atatatatacaaaagaatgaga---gccataatattattctttttatcaACCTTACAGGCCAGTCTAAATTTTTGTGGACCAGGAAT--CAAGTAAGAGttatgttcattttgtttt-catattcttcATAGTCAAATTCTTTGCATAGCACAGTAATGacaaatcatcatcatcatccaaaTCCACCATTAATGTGTCCCACTTATTCACTACAGTTTACGTGACACCCTGGATACTTTCCTTTTAT----AGTTAAATGCCATTG-ATATGCATAGATAACCTCAATCTTAAAGTCTACTTTACAGTAATgacatttttcttcctattaGATGAGAAGAGATTtcatagagaaatagaaaatgagtTTTTATAAGGTGGGCTCTATCCACAAAAGCATAT------------ACCTTGAGCTGGGGATGTGGTGCAagtgaggccgaggcaggaagagctctatgag--tttgagatcagctt-----------------gggGTACATAACAAGActgtttttcaaaaaacaaaactaacttaacctaaaactaaaaaacagcaaacaaaaaatcagatagCTTGAAAGGAatcatttggaatttaatttaaaataagtatgttttcctttaaatattaaaacaaaaaattcaacataacctatccaataaaaacataaaacaaaactcaatgaatgactttgaaaacatttatatatatatatatatatacatgagttCAATCAGGACCTTGTAACCTAATAATATGTAGAGACAC-ACATTGGATAATAATAGCAAACActaatgaaatgttttattaacTAATCTTAGGGACTTATatccttaaaagaaaacagatacaCATACAATAAACCAAGATAAT---TGGTGCGATTTTGAAAATCATTCAATCACAAAGGGAAAATAGCACCTCTATTCAT-TTTAAGTCCAATAACACAAAGCAATgattatattttttacatttaattttcatgttgcCTAATAAATAATTGCCTGCCTGAACTCTCCCCATTATTTGCAGCATTca-gacagttttt--------taaaagaaagtctaGAAAATTTTAGATGCTTGTGAtaaagttaatttatttattcctaTAGAATATAGATTATATTCACTTTGCTCCAGGCTGTTAA-TGTACACCTCCATATAACATGGGAGTGGAggagcaaataaaatatttagaggtCATCAAATTATTGAATGTTTATCAAACTTTactacataaattaaaaatatttctatcagGTGAGAAGGATGAAGG---TCTCTTTCATTTCTAGCAACCAGTTAACGATGATAAAATGATCTTCTTGTTCCCCCTTGTTCAGCTTTGG

a score=36796
s chr3            97420613 2014 + 160039680 aaaataaaTCTTAAAATAACAACACTAAAAAATGTGAGTTCCTTCACATGGGTGTGTATG-CAGAGTATAGGAAAAGTATAGCTTTCAATGACCTCTTTGTGAGAGAGCCTCTTGGGTGGGTCCTTGACCCTGCTATCATGGAGTTACATATTTCTAATGATACCTGATCACCATGCCTACTGAAGCTGCCTAG-GATGCAAAGCTTGAGGCACAAAGCCTATTTATTAACATCCCATGTTGG------------------TGTAGAGACTCCCCA--------GAATCCAAAGAGTAGAAGGAGCAAATC---------CATCC--------CCC-------CATGCATGACCACTTGACCTGT-------------GAGATCA-------------------------------------------TCCT----------GGTCTCTCTGAGCAGAGGGCCCCTA----CAGTGA--CCATGTGACAGTGGTGGCCTTTGTCCATCCTTAAACAGCTctcctctctttcccaatcacaaaatcatcccagaagatatgtaactga--gaaaatgaaaataacat--------agtctatgaaatttctttctaaagtgattgagggcaagaaaataatttgcaaactttggagct----ttataaagcaagcaagctgatcacagcacatctctcaacaaccagtgggttgtaaaatcaagatgagagctcttgGCTGAGTGAATAAAAAGGTTTCTGATTACAAGTGTTATGCAAACTCAATTATGTTTTATTTAAGCAAATGTTTGTCTGCTTCTACTGTCAAAGCATGATGAATTAGAGGAGAAATGTGACCTTATGCATTTTCCCTGAAAATTATCGTCACCACTGTGCATGTCAAATTCAAAGTAGTAG---TATTTTCTATTATACATTGTTTACTGTGAGCATATTTTCTACCTCTATTATCTCACTTAAGGAAGTCAGGCATCCCTTAGGATTATAAGTAAACAA---CTAATGTCATTTCAATTCTGGA-TTATTATTGCTAC--------TTTAGTAACTGATGCATATA-AAACTGATATTAAGACTATGCTATTACATAAATGTCACGACAGGGATGGTAAGACTGTGGACCATGTTTCATAATTGCTGTTTTTTTTTTTTTAGGGCTGATATCCTAAGCTGGGCAGAGTTTCTCTCATTTGTGACCGTTAATAAATAAACTGCTTACCACTGACATCTGTTGGAAGCCCTGTGTCGCTGGCTTTGGTGTGAGTGGGGATCAGTGTCCTGCACAGCACTGGACA---------TTGGTAGAATTAGCTGTTGACCTTCATGAATCATGAT---GACCTGCCATCCTGAGAGCTGCCTCTTACACACTCAATACTTCACAGAGGAGTCAAA-----TCCTGTGGTTTCTCCATAGTTCACTTTTCTGGGATGACAA-TTATAAAGGTTCATGGACTAACCTTTAGAGAGTAGCCTAAGTAATCTCTCTCTCAGCAGCTGTCT-GAAACGCCTTAGCACACAAATACAAATCAAAGGCAACA----------GCCAAAACAGAAGCTGTAGAAATGAAGAACAATTAA--CTCTCTTGTGTATTTATTAAGGTCATAGAAATCATCTTTTCCCAAAATGCAATGAGAACAGCTCCCTATCTCTTTTGGGACATTTGTTAGTAAATTGCAGTCCTAAATGTATTGTTGGGAATTGCTGTGGCTGAAGCCTGAAAGCCTGACTATCCTCCTCCCTGGTGGGTATGCAAGTACACAGGCTCATTTGATTGGATTCTCTAATGGACAAATGACTAGTAGCCATGGCTAAGAGCTAGGGATCTAG--ACTTCATGCTATGCATCCTGCCAGTTGGTTGAGCATATGAGACATAGTTCTAGCAGCTTAGCTGCTTTCTTAGCTTTTACTTAATTCTAGCT-GGGCTGTTTTTCTGAGTGGAGAACTTCCTTTTCTTCTCAACGACAC-CCTTATGCCTTATGCCTAATTCCT-------TGTCTTGTTCATCAAATAGCACTGACACTCTTTGCTCCTGTTAAGTTTAAAGGAATCACAG------CCATCATATGACTCCTTAGGGCACAGATGGGGAGAGAGCTAGGAGTTTAAAAATATTGCAATGTTTTGTTGCATC--ATTTTCTACTAAAACATTAGGCAGTGTCA
s HiC_scaffold_1 107170269 1991 - 233722169 agaataaagct---------aataatACAATTTTTGAGTTTCGTTACATGAATGTGTACATCAGAGTG--GGAAAAGACTGGATTCCAACAACTTCTCCATAAGAGTACACCCCAGGT----CCTTAACTTTGTTATCACAAATACTGATGTTCTCAGCATCATCTGAACAACCTGTTTGCTGAGGCTGAACAGAGAACCAGAGCTGGAAGAGCAGAG--TACTCACTGGCAAGTCA-GTTGAAATCAATAGAaaggaagatacaaaaattcaacACTTCAGTTAGAttcattgaagaaaaaaag-aaatcaagaaagggCATCTTGGATAAACTCTGGAAGACATTAATGTTCAATGGTTCTGTTCCAATTTTTCTAAAGATCAGAGAAAAGCAACAGCTCGTTGGTACAAAAATGTAGCACCCAGATCCTCAGTTTGTGGGAACTAACTAATCTCAAGACCAGTATTTCCAATGAAGCCACATGGCAGTC----TCATTTTCCAACTGAGCGTAGCAACTCTTTGTTTCTAGATCAGTAAATCATCTCATAAGA-----AAATGATCGTGAGTAAAATTAGGATTTACCTCTAGTCTGTAAGAGTTCTTTAACAAACAATT-AGGGGGAGTAAATAATTCACAAATTTTATAGTAAATATTATAGTAAATGCAA-------------CACCTCCCAAGCATCAGTGTGCTGCAGTATAAAGATGAGAACCCCTAAGACAGTGAATAAAA---TTTCCAAATCTAAGTGCTATATAAATTTAATTGTACTTTATTTTAACAAAGTTCTGTTTGTCTCTACTACCATACGACAATGAATCAAAGGAGAAATGTGACATTACGCTTTCTCCCTGAAAATTGCTGTCGCTCTTCTGCTTATCAAAATAAGTGTGGGAGAGATATTTTGTAGTATATACTAtttaccatcaacatatcttctGCTGATATTATCTTCCTTAAGGAATTCAGGCA---ATCAAGACTGTAAATAGGCCATCTTTAATGTCATATCAAATCTGGCTTTATTATTACTATCTATGTTGTTTAGAAGTTGGTACAAACAGAAAGTTATATTAACCCT----TAGTAATTAAATatcatgaaaataataataaaa-tgtgcaCTATGCTTTATAATTGC----------TTTTAAGGGTGGAAATACTGAGGTAGGCAAACTATTTCTCATTTGTGA----TGGTAAATGAACTACTTACCACTTACTCTTGTTGAAAGCCTTTGAT--TTGGCTTTGATG---ATGGGACTTGTGGCCCTCTACAATAGTAGAGAAAATGGAGTTTGGTAAAACTATCTTATCATCT--ATGCTTCTTGATAGGGACCTGCTTCGGTAGGAGTTGCCTACAGCATAATTACTGCCTCATGCAGGAGTCAAACAATCTTCTTTAATAGCTCCATAATTCCCTTTTCTAGGATGGCCATTTATAAAGTCCCGTGGACTAACCTTT-GGGAATTATCTATTTAATCCCTCTCCAAGGAGCTACTTAGGAACTTCTTAGTGTGCAAACATGATTTAAGGGCAAAACTGTACTCATGACTGGATAAAACCTGTAGAAATTAAGAACAATTAACTCTCTCTCTTGGATTCATTAAAGACTTAGCAATCATCTTTTCTCAACATTCA---AGATCAATGTCTTATCTCCTTTGAGACATCAG------------------------------------------------------------------------------------------------------------------------------AGGGGGATAGAGACCATGGCTATACAACAAGAACCTAGATATTTTGCGCTACTCATTCTGCCTTTTGGATGTATTTGT------CTGTGCTA----------TGTTTTCTTAGCTTTCAGCTACTCCTGGATAAGGCTTCTATCTTGGAGTAAgtactttcctttcttctcataAATTCATCTTTTGTCTTCTTACACCCTCCTTTGTGACTGAGCTATTCTTCATGGCCCAGTGATACAC--TGCTGCTATggagtttaaaggagaaaaaggtagACCTATTGACTAGCTATGTAGGGTACAGGTGGAAAG-----TTATAGcttgaaaatatttcagtattttattagaccaaaatttcaatgaaaacatCAGAGAGTGTTA

a score=22887
s chr3            97420978 1231 + 160039680 GTGGTGGCCTTTGTCCATCCTTAAA------CAGCTctcctctctttcccaatcacaaaatcatcccagaagatatgtaactgagaaaatgaaaataac---atagtctatgaaat----ttctttct----aaagtgattgagggc-aagaaaataatttgcaaactttggagctttataa-agcaagcaagctgatcaca-gcacatctctcaacaaccagtgggttgtaaaatcaagatgagagctcttgGCTGAGTGAATAAAAAGGTTTCTGATTACAAGTGTTATGCAAACTCAATTATGTTTTATTTAAGCAAATGTTTGTCTGCTTCTACTGTCAAAGCATGATGAATTAGAGGAGAAATGTGACCTTATGCATTTTCCCTGAAAATTATCGTCACCACTGTGCATGTCAAATTCAAAGTAGTAGTATTTTCTATTATACATTGTTTACTGTGAGCATATTTTCTACCTCTATTATCTCACTTAAGGAAGTCAGGCATCCCTTAGGATTATAAGTAAACAA---CTAATGTCATTTCAATTCTGGAT-TATTATTGCTACTTTAGTAACTGATGCATAT--AAAACTGATATTAAGACTATGCTATTACATAAATGTCACGACAGGGATGGTAAGACTGTGGACCATGTTTCATAATTGCTGTTTTTTTTTTTTTAGGGCTGATATCCTAAGCTGGGCAGAGTTTCTCTCATTTGTGACCGTTAATAAATAAA-CTGCTTACCACTGACATCTGTTGGAAGCCCTGTGTCGCTGGCTT-----------TGGTGTGAGTGGGGATCAGTGTC----CTGCACAGCACTGGACATTGGTAGAATTAGCTGTTGACCTTCATGAATCATGA--TGACCTGCCATCCTGAGAGCTGCCTCTTACACACTCAATACTTCACAGAGGAGTCAAA--TCCTGTGGTTTCTCCATAGTTCACTTTTCTGGGATGACAA-TTATAAAGGTTCATGGACTAACCTTTAGAGAGTAGCCTAAGTAATCTCTCTCTCAGCAGCTGT-CTGAAACGCCTTAGCACACAAATACAAATCAAAGGCAACAGCCAAAACAGAAG----CTGTAGAAATGAAGAACAATTAACTCTCTTGTGTATTTATTAAGGTCATAGAAATCATCTTTTCCCAAAATGCAATGA---GAACAGCTCCCTATCTCTTT-TGGGACATTTGTTAGTAAATTGCAGTCCTAAATGTATTGTTGGGAATTGC-TGTGGCTGAAGCC---TGAAAGCCTGACTATCCTCCT
s HiC_scaffold_1 107157282 1253 - 233722169 GTGCTGACCTTGATCCTTTTCTAAATGAGAACAGCAT--CTCTGCTTCTTTGTTATCAACTCA------AGGGCAAATTGTTGAGAATAGGATTATTTCTAAATAACCCCTGAGATAcgtttttttcttagaaaaaggaTTGTGGGTGAAGTAAATCACTAACCAGCTTCAG-GTTTTATGACAGGTAATATGTTGCTTATAAGCACACCCC--AAGGATCA-TGTGTTACAGTGTAAAGATAAAAACCAACAGTT-AGTAACTAAATATGTTTCTAAACATAAGT-TCATACTtagttaattatattt-atttaaacaaatatttttgtgtaCCTACAATCACACTGTAAACCAGCATAGTGGAAATATGTACCTATCCGTATTTCTCAGTTAGTAC--TCTTGGTTCTGCTTGTTAAAACAGAAG-ATTAGCACATAGCATTATGCATTATTTACCATGAATAAATTTCCTGCTCACATTACAT----GAAATAATTCAGgcatttctcaggttttggaagAGATAGTCTCTGAAGTTATTTCTATTCTGATTCTGTAAGTACTATTTCAGAAATCTGTACACAcccagaaaatatattaaaact--gttATTACAGAAATGCcattaaaatgataatgaaaatatgtGCAATATTCTATAAT--ATGTTCTTAAGGAGTAAGGGAT-ATATCCTGATGTTGGaagagcttttaaaattc-tgatgataaataaataaaactacttaCCACAGATTCTTTCTGAAAGGCTTGGATTTCTGATTTGATACGGAGCTTGATGTT-GTTCACACTAgtgtctgggctacaaagcacACCCTTTGGAAAAAACGGGCTGATGACATCTATGCATCATAAAAGGAACTATCACTCCCAAAGCTAC-TGGAGCATGTCTGTTGTCTAATGAAGGAGTCAAAAATCCCAT-------TCACAATTCAGTTTTCTAAAATGGCCACTTATAAATGCTCATGGGCCAACCTTTTGGGATTATACTTC-TAATCTCTCTCTGAGCAGCTGTTCTGGGATGCCTCACTATGCAAACACAACTCAAGGGCAACAGCCTGAATAGAAAGAAACTGTAGAAATGAAGAGCAGTTAATTTGCTCTCAGATCCAATAAGGTTCTGGCCTTCATCTTTTCCCAGCAAGAAATGAGATGATCAGTTTCCCACCTCTTTGGGGGACATTTGTGAGTAAAGATCAGCAAAGAATTTTTTCCAAGGAATTATGGGTGGCTGAAATCTTGTGAGAAGCTTCTCATTCTTCT

a score=22656
s chr3            97454532 2205 + 160039680 GCAGAAGAACCATTAGGGAAATTAAACATGTTTTACAGAGTAGTATAAGCTTGCATCAAAATACTGGG-CCTAGACAAACTATATTCCTAATTCAGTACTAAACATGTAGACTGTGTGATTAGGAAACCCAAGGGTCACATGATTGGAACTTTACCACAGTCCCTGAAGTTATGCCACCAACCTGATCTCTttttttattagatttttaatttacatttcaaatgctaacctgaaagtttcctataccctcctcttgccctgctcccctacccacccactcccacttcttggccctggcattcccctgtactggggcatataaagtttgcaataccaaggggcctctcttcccaatgatggccaactaggccatcttctgctgcatatgcagctagagacacgagctctgggggtactggttagctcatattgttgttccacctCTTATGAGGCCAAAAGCTTCATGACTCAGAAACTCAAAAATCATCATTGAGGCAGAACGTATGTTGCCTAGATAAATGGGATTTTCCAGGATTTTG----------CTGCAAAATT-TTTCACCAAGTGTGCCCAGTGTCATCTTCTGAGTTTAGAAAAGAGGTCACTGATCAGGT-TAGCAGTTAGGAGGGAAA--AGATGGTGGCAAGTCTCCAATCTGTATAGTTTACAGACTGTGAAGGACAGAAATTGTAGATCCCG-AACCTTCTTCTGTAAC---ATGCCAGCAGCTGGGTGTTAGGAGGC--AGAGAACAGAACCTTGGTTTTCATTTATAGCTAAGTCAGCTAGAATGCAGCATGTTGCACATTGCTCTACCACCTTCCGTTCTATAAAGATGGTCAGTGCTCCTCAGGGATTCAACATTTTCACAAAAGTGGCCTGTTGGGCAAGAGTGCTAAGTTACCTTCAGAACAAGGCTGTGCCTTGGTGATTTATAACTTTCAGAAT-AAGGAATCAGGAAGGCAGATGGCCAACAACCATGACTCAGCAGACAGAAAGACCTTAGTCATCAATGTGTCCTTGGCAATGAGAGCCATGAACACGACTCCAATTCTAGAATTATCTTAGAAAAGTTTGTATGCTGCAGACTATTAACAACTGGACTCGTTTGGAAGTGTGGGCCCTTTGACACTGGCACGGAGTATGCAC---TGTGCCTCTGAGAACAGAGGCAGTGGACTCGGGTATAGCAGACAAGGCCTACAAAGACCTGTGCTTGAGTTGACCTCCCTTAACATCTTCAGATTTACTTGAGCACAGAGCAAGTG-TGCCTGACTCGGCATCTAAGTC------TGGCACAAACCT---TCAGGAAATGAAGAAGTAATCAAGACATTACAGTAGGCTCCATACATGTTCTCAGGCTCTCCTAATTGTGCACCTCGGTCGAAAGCATACCGTATTCTGTGATGGGCTCTCTACTATTAATTATGGGCCGGGGAAAAGTTTCATGGGCCATT-GGAGTTAGCCTACAAATTATTGATTTTCTGGACCACTTTGatttttataagaaataaaaaaaaatattGTCACCAGCAAAAA-----TAGAAAGGAAGCAGGCTACGCTTAGAGTTGGCACCTCCTACAGCAGCGTGTGAAGTTCAGATTTCTAG--GTAAACAATTAAGATA-----TAAACAAAGAACAGGACAGGTGAGCAGCA-----------------------GATGAAAAGATTAAGGAGGAAAGAG--ATGACTGAAAGCTACATAGGCAGGGAGGAACAGGTGAGGTGACTTTAG----ATTTAAcatttgtggcttacaaaaatccagcagat-gtcagattaaacatcattaactccagtttacaaataaggaattataggcttagagtagtcacttagcaagttaacggagttatacaagcatcaaataacagagccacatttccctaggccttttaatttctttcagagagggtctcactatgcaacccaaattaacacaaaattcattgtgggtagcttaaaacactcctattgtatcagccctcccagtgctgggattatggtggctgtgcatgttcatatctagtttACAATGTTTTTCTCACAATGTCTTGACATCATCAGTACCTAAAGGAAATACAGGCAGATAGAATGAAATAGGGTTAGACAAACTCAACAACTGAAGTATAAGTGTTTCCTTGTAGAAGCCAAGGCTTCTAAACTACATAAGGCAGAGGTTAAACAGAGGCAGAAGGAAGCTTCGTGCGACAGGCCTCCTGAGTGGGTTGAGTACT
s HiC_scaffold_1 107232282 1854 - 233722169 GCTGAAGAATCATTAGAGTAATTAAGCAATTTACACAGAATAGCATAAGCTTGCATGAAAATACAGGATCCTCCAAAAACTGTATTCATAGCTTAG-ACCAAA-----ATACAGTG--------------------CACA------GAACTGT-CCACA-----------TAGGGAAACA-------------------CAGAGTATCGATCCATACTT------ACAACTTGAAACACTCTAAAGTCCTCT-----AACTGTTGCCCTCACCATCC-------------------------------TACTTATATATATAATAGTCAGAGAACCAA----------------------------------ATCT-------CAAATTCTCCTAggaaaaccattt-------------taaaataatacttttatt--------------attaaaagatTAAT---------ACTTGATAATAATTAGTTA-ATagttatagtattattttaaaagataattctcTCTAGGAACTTGACAGCCTTTCCTACACCTTCATTTCACCAAGTGAACTTAGTGTAACTTCACAAGTTT---AAAAGGCTCAGAAACTAAGTATTGTAGGAAACTGGAAAAGGGGGTAATAGTACATTTTCAACCCAGATATTTTATAGAATGTGAAGAATGGAAATTGTGGAACTTGTAGCCCATTTCTATAATTCATTGCCTTCAACAATGTGTTGAGAGTCTAGGAAATCACACCTATCATTTCCAAGAAGAGCT---CCTGTGAGAACTCCGTGTGTTGCAGATTGCTCTACT-TCTTCTGCATTCTGAAGTGTATCAAAATT--------GTTCTACTCTTCTACAAAAGTAGCCT-CGGGGCAAAAGCAATATGTTTTCTTAACAAAAAATCTATGTCTTACCAAATTGCTATTTTCAgagtaaaagaataaagaaagtagATGA--GAAAACTAT---TTGGCCAATAAAATG--------CATTGACATGTTTCTGGCAATTAAAAGAATGATAACTACTCCCATC----------------------------------ACT-----------------------------GGCACTTTGATATTGACAATGAATGTATAAATGTATGGTTCTCAGAGTGCAGAAAGTTTAACTGAGGATGT-------------GAAAGACCTGTGCTCAGGCTAATTCCATTTACTACCCTTAGATTTAGTCTTCAATATAATAAATGATGCATAATTAAGTCCCTAAGTCTGAGATTGATATGAAGCtctatcagaaagtggaaaataGGTTTAGA------GGTAAATTCTAGGAGCATCCATAGGTTCTTGACAGTATGTACATGAGTCCTTAGCAAATTATTCTTGATTAAGGAGTTTACAGTATTAAGGATGACCCAGGAAAAGTTTCCAAGAGAAATTGGGAGTTATTCTGTAAA-GATTCATTCCATGAATTGCttcaatttttatagaaaataaatgaaaatattatcacTAACAAAAAGGAATGAGAAATGAAACACAATATTCTTAGAAACTGTGGCTCTTGGAACAGAATATGAAGTTCTGGTTGCTAACCAtcaataagaagaaaatgtagtaagtaaagaacaagaaaaattagCAGGACAATCAGCAGTCAAATTTAGAAGAATGGAAtgataaaggaagaaagagatataaccaaaaccatCAAATAATGATGGTTATGGATAAGGtaattatagatttatttaacattCATGGTTGGCAAAAATCTTGTAAAGAGGCAGGCTAATCATTAGTAATCCCagtttacaaataaggaaatcaGGACGCAGAGTACT-------TAAAATAACTGGGTAACACATGCATCAAGTAACAGAGGCATATC---------------ATTTACTGCAGTGTGTTTTTTACT--------------------CAACTTCTTGT-----ACTTA----ATTACTATATATTCATCACTCCCA-----------------------------------------ACAAAGT--------------------------AACATTTTAAGGAACTGCAGGTAGACAGAATGAAACAGGGTTAGACAAACTGA-----TGAACAATTAACG-------GCAAAAACCAAAGTGCACTAACTGAATTaagtagaaatgaaataaaataaaaaggaagtctAATATAATACGACTCCTGA----GTTGTGTACT

a score=36082
s chr3            97457487 778 + 160039680 AGAAAATTAGCTTGAATGGAAACAGAGCCAAAGCCAGACT-CTCTGGGAGAACTCCTAATTGGGCTCATGGTCCCAA--CTTTCCATCATCCCCTTCCCACAGTGACCCGGTTGCTGG-TGGATTTTCTGGGAGGGGGTGGATGTTTCATGATTCCCTTCGATGGAGTGAGTAATTGAAAGGGGAGAGTGGCATGTCAGTGCTTCTTTGAAGGATGTAATTAGGTAATATCATGCAAGGAGGGAACCC--AAAAAATTAATAAAATGCAGACAAGGGGGAAGTGCAGCTCTGCTCATCTGCATCATCTCATTTACAGAATTTAAGATGAAACAATGGAGATAAACCAAGAAGTTACAGTTGCTCATCAGAATTGGCTCAGAAGTCTGACCTCTGGCCGTCAGTC-AAAGGGAGCATCGCCTCCCGAAAGTCTGTCTGTGCCGTGCTT-GATCTGAAACAGATGAG------GGTGGC-TTCTGAGAGCATTTGGGGT-ACATTTTGATTATATCTGCAGTTCGCACACTTTTTAAACTAGGAAGCTGTTTGAGAATATTTGAACATATGGCCCATCCACACCTGAATTCTCCTGCCTACAAAGATGTCGAGGAAAAAAATGTTTCTATTGCCCCTTCTGGAGCCATCTTAATTACAGGGACGGAA-AGATTTC-AAATCATTGGTGACTGTGTCACTGATAACTTGTCCAAACGCTATGGAGAGCATTTGTAGATTTC---------------CTTTGGCTATTGAATCGGTTATTTTGAGTTTTAAAGGTTGCCTTTGTCCtctctgtct
s HiC_scaffold_1 107235052 795 - 233722169 agaaaattggcTTGAA-GGGAACAGAGtcaaa---agatttctttttaagaCCTCTCAGTTGGGACTGTGGTCCCACTTCTTCACATCATCAACTTCCCACAGAAACCCAATTTCTGGGTGGATTTTCTGGAAGAGGGTGGGTGTTTCATGATTCCCTTCGTTGGAGTGAGTAATTGAAAGTGAAGAGTGACATCTTAGTGCTTCTCTGAAGGATATAATTAGGTAATATCATGCAAGAAGGAAACTCTCATAAAGCTAATAAAATGCAGATGAGAAGGAACTGCAGTACTGCTCATCTGCAGCAACTCATTTGCAGAATTTAAGATGAAACAATAGAGATAAACCAAGAAGTTACATGTATTCAACAGAATTGCTACAGAGTCCTGACCTTT-GCCATCAATCAAAAGGGAACCTTCACTACTGAAAGTTTGTCTCCACTGTACTTGGATTTGTACTAGAAAGGACAAAAAGTGGCATGCTGAATGTGTCAGAGGTAATATTTTGATTATATCAATAGTTCTCAAACTTTTCTAACTCATGAGCTGTTTGAGAACATTTGAACATATGGTCTATCCACACCTGAGTTCTCCTACT--CAAAGATATcaagt---aaaatacttttattatccCTTCTGAAACCACCTTAATTATAAAagctgaatatattttaaaatcattgatGACTATCGTAGGCATTATTTGTCCAAATGTTTTGAAATGCAATTATGTGTTTCCTACTACACATATTTCTTTGGCTTTTGAAT------TCATGACTCTCAAATATTCCCCTAGGACTTTGAGTTT

a score=16927
s chr3            97472935 971 + 160039680 ccccATGGTATTTTTAATGTGTCTGTGTGGGGGGGGGGGGTGACCACAGTGATATTCATCCTAAATATTTGGGCCTGAGTTGTTAAATAGTAAATACTT-TTTAATGAAAATAGATGTATGAGAAGAGACATTGTAAGTGATGAACTACTCTGCATTAATTTGACAATAAATCATCTGGAAGCAGGTCTCTCA---------------------GTTATGACTTTATATTAACCCTGCTTCTCAGTAGAAATAACTGAGCAAGGGAAAGCATAC---AGAAGTGCATAC-AAACAGCTAGGAGATGGC-TTCTTGC-TTTCAGCTCATCAACAG---GGGAGATTTGATTTGCTTGTTTGTTCTTTGCTTGGGTTTAATTTTTGGCTCAAGATGCAAATCATATGGGTTAGCTTGACCCTTGGTGTAGTTTCCCTACACTGGTGCTGCTATGTGTTTATTGATCCCAGCCCAAAGAATCACAGCAAAAGAAATTTGACCACATTTCTCAtgtgtgcatgtatgtgcgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgcatgtgtgagcatgtTTAGCCTGTGACTGGCTGCCCACACAGCAAGACATGGTTCATGTAG-GATGAC----------CACAGAGATCTAATATAGTGTGGAAAACACTCAAACTTAAGAATCA-----ATACTGAACTTGAAGGCCAGCTTCTCTCCAACACAGCTGAGTTGCTCGTGTAAAATGAAAAGGCAATCATGTCTGTCAGCCTCGGGCTGATGTCCA--CCTCCCT-GCTTACTGCACCT-ACTACAGTCTCTC----TGCCATTCA--CCTGTTGGGAGAGATTGTTTTCCTTACTCCTGA--------------TGTTAACTATAAAAGGATATTTAGAGGCTGCAAGGAAGTGGGAATAGACAGAAAGGGCATCTAACTGATGAGGCTTGCTT-CTCTCTGTATTCTCTTAGTAGCACCTCACACTGTTTTATATtctctc
s HiC_scaffold_1 107240851 905 - 233722169 CCCCATTGCATTTTT--------TCCCTACAGGGAATTGTTGATAGCAGCAATATTCATTCTAAATATTTGGGTCAGAATAGTTAAACAGAAAGGACTTCTTTGATGAAAATAGATGTATGAAAAGAGACATTAAAAGTGATTAACTACTCTGTGTTAATTTGACAGTAAATTATCTGGAAGTTAACCTCTCAAAATTCactgtcagtgagtttgttatgaCTTTATATTAACCAT-CTTCTTGGTGCAAAC-ATAGAATGAGGGAAAGCATACCATAGAGTTACTTACAAAACAATCAAGTAATGACATTCTTGCTTTTTGGTTCAACAAAAGCCATAGAAATAAGGCTTATTTGCTTTGTTATTGCT---------TTTATGGTCCAAACTGCAAGCCGTCTAAGC--------CCCTTAGTTTAGATTACCCACACTGATACTGCTATG----TATTAATTCTGACCAGTAGGATCACTGTATAAGACATTTGGTCACAACTCTGATTCACA-------------------------------------------------------------GGGAGTA---GGGTGTCTAGGGGCTCAAGACAGACCTG-----GGCTG-CCAGAGGATGAACCATGATTCACATAGCTATAACAGTTTGTCTGTACAGGTCACTGGT-TGGTGTACAAAATGCTTGTGCTCAGGAGTCAGACAGGCCCCGGATTTGAATGCCAGCTTGTCTCCACTATGATTATATT---------------AGAGGCAACACTATCT----------GGCTGACATTTAGTCTGCCATAGCATTCTGCCCCTCCCTACATCCTCATCTAATGCC-TTCATCTCTCTTAGGAAAGATGG-----CTTATGCCTGAGCCCAAGGGCTCACGGTTGCCTTTAAAAACATATCTGGAAGTCACAAGTTGCTAGAAATAGATGGCAAAATTATTCCACTGGAGAATTTTTATTATTCCCCAACTTTTCTAAGAGGTACCTGAA-----TTTACATTCTCCC

a score=21549
s chr3            97477969 830 + 160039680 TTTAGAGATAAGGAAACTGAATTT----------CTCAAGGTATACTGCTATTGGAT--------------CCCAGCCCAGGATAGAACCTGGGTACAGTCCTGACCCTCACGCT-ATGTCAAATGGGAGGGAATGTTGAGG-TACAGTGGCAAGTTGAAGGCATTTTCAAGAGTATCCCCAAATCCACAAGTGAATTAAAAACCACTATTTAGTCTTTCAATGAAAGCTGCTACTCAAATAAGAACATCAAATGATATCACTTAAATATTCCACAAATGCTTGA----ATATTTCATACTGAGAAACTCT-TTTGTACT-----AAAAGCCAATGATAGGGGAAAAGGAAGCATTTTAACTTACAGTGATCAGTAGTTAGTGAACTGTTTCTCTAACCATAGTTCCAAGCCCAAGTTCTAAAGCAGTGAAAGCA--AACTGGGGACATCAGGTTCCCACCTGTGAAGC--CCTTCAGTAACTTGTATTATGGTTTAGAAGT-TGCATGCAGTTTCTTTAGTAAAAGAATTAATTGCTAGGAATAATGCCTGCTGACTCA--CTGTATTAACAGAAACCCAGAACCCAGTTCCCTGGCTGGAACTCT----------------------------GCCTCCCTGACTCCGTGCTTAAACATAACCACATTT---CATTTCTCCACCTAGGGAGTCTTTGAGAA-TTTTGGTATCTCATTGGAAATGAGGGCTCTGTTTAGCAGAGACTTTTAGTAGAGGCTTCCTGGCAGATGAGTGA--AACTTCCCTTCACATCTGGTCCTGAGATTCTTGATAGTTTCCTGG-GAACCAGAGTTTTTAGCCTCTTACTAATGTCAAGCTGTGACTACCTGCTGTCAACCCAACTACCTCAAGCTCCACCTCTGTA
s HiC_scaffold_1 107244031 878 - 233722169 TTTAGAGGTAGAGAAATTGAATTCTAGTTGTTTGCTCCAAATGCATGGCTGATAAATTTGTAGCTTAAGGCCAGAGCCCAAGATT---CCTGGATCCAGTCCTTGTAC-CATGCTTCCATCAAATGTAGGGTAATAACAAAGCTCCTgtggcaacttgaaaatatcttcaAAAGTGCCCCAGAATCCATAATCAATTCAAAAATCATTATGTAGCCTTT-AATGAAAGCTATTATTCAAA--ATAACATCT-------TCAATTAACTACTCTATAAAGGCTTAATTAAATACCTCATGCTGACAAACTGTATTTTTACTGAAGGAAAAGTcagt---------aaagaaaacatttaagtgAATGTTAATAGTTGGTTAGTAGACTGTTTCTCAAACCATGTTCCAAGGCCCAAGTTCCAAAACAGCAAAATGAGGGGTGAGGGACACGAGGGCTCCACCCATGGAGCAGCTCTTCGTTATCTATACTACATTTtagaattctacatgaaatttcTCTACTAAAAGAATTTTTTGCTACAAATAATGTCCAAAGAGCCACCCTGTGTTAACCAAAGTACTGGACCCAATTCCTTACTATGAATTCTCCTGTAGTTGTCACTGGACCACAAGCTGGCATTTCAAAAGCTTTGTTGATAGTTGCTCACATTTTGGCTTTTCTTCACCTAGCAAtgctttgtgaattttttttaccTCATTGGAAAAGAGAGCTTTGTTTAGGAGA-AGTTTCAATAGAAGCTCCTTGCTGAGTGGATAAGCAAGTACCCTTCACCTCTTG----GAGATTCCTAGTAATCTTCTAGCAAAAAATAGTTTGTCG-CTTTCATCAGTGTCAAGCCGTCAATGCA-ATAATCAGTCCAGCTACTTCAAGCATTGCCTTTATA

a score=50455
s chr3            97491140 1013 + 160039680 agagGACTAAGAAAGAGAACTGCTCTTCCTAAGATCTTTATCTAAGACCTATGCAAGCACTTCTTTGCAGAGC-AGGATGTGTCCCCTAACAGCCTGCCTCAGGAAGCCTAAACACTAATCAGTGGCAATTAAAAGTTTCACTGGGCACTATTAAAACTTTCAAAGTCAACGAGTTGGAGTAGCAGTGGCAAATGAGTGGCAATGGGGATTGCTAAATAGTCACTGTTTGCAAGATACATCAGCCGTAGGAGTGTGCAAATTAAAAGATTTCTCCTGCGACACCAAGCCACCGAGAAACTAATTTAATCACATCCCTAAATAATTAGAAGCTCCGTGCATTCATTAAGAACCAAAAATAAGTGCTTGCGCCATGTGCAGGTAAATGACAGCAGGGACGTGCAAAAGTTGTTTTCTAGTTCAGACTCAGAAAAAAAATGTGTCATTTTTATTGGCTGAAGGAAAAAAAAGTCCCTGTAATAATTTTGTGGTAATGCTCTCGTTAGGAGCCACGGGAGAGCTTAAGAAACCCAGCGCTCTCATAAAGCATCCTGGCATTTCCATCGACTCCTCAATAACAGTTTTATGATAAAACTAACATAATGAGACGTAAAGCCCTTTAGCCCTCTGCCTGGGGACACTCAGTGTCATTACACACATTGAGGTTAAGATGAGCCTTAGACCCGAAGTATCAGGTGGCTGGAGGTCCGTCCATTTTACCCTTCACA---CTTTCAAAGAAA------------------GAAGGCATGC--------------------------TGTCACCATC-----------------AAGAGATGTTACTACCTGGCAGCTCTCAAGGCCGTCTTGCAGTGAGGTGACAAGTGTCTGGGGCTGAGCCTCTGACA-GATTGCTGAGTTTGAAGCTGTCTTGACCAGAGCTTTGGTGTGAAGCAGG--AAGTGCTCACTCTGCCTTCCTAAGC--------TTTTCTTACA---TTTGAAGTCCCAGGATAGCCCTACAGGAGACACAGTGTTGGGCTACATGCCAACTCCACCCTCCAGAGTTTTTGTGTGTGCAGAGAAGATAAAGC
s HiC_scaffold_1 107257060 1078 - 233722169 AAAGAAAGACGAGAGAACTCTGGTTTTCATG-TATCTTCATC-AAGACCTTTGCAAGTATTCATTTACAGAACCAAGCTGTATCTCCAAATAGCCAGCCTCAGTAAGCCTAAACGCTAATCAGTGGCAATTAAAAGTTTCATTGGGCACTATTAAAACTTTCAAAGTCAATGAGTTGGAGAAGCAGTGGCAAATGAGTGGCAATGGGGATTGTTAAATAGTCACTGTTTGCAAGATACATCAGCCGTAGGAGTGTGCAAATTAAAAGATTTCTCCTGCGACACCAAGTCACTGGGAAACTCATTTAATCACATCCCTAAATAATTAGAAGCTCCGTGCATtcattaaaaaccaaaaataagtacTTGCACCATGTGCAGGTAAATGACAGCAGGGACATGCAAAAGTTGTTTTCTAGTTCAGACTCAG-aaaaaaatgtgtcatttttattggttgaag--aaaaaaattccctATAATAATTTTGTGATTATACTCTCATTAGGAGCCACAAAGGAGCTGAAGATGCCCAGAGCTCTCATAAAATATTCTGTTATTTCCATTTCCTCCTCAATAACAGTTTTATGGTAAAACTAACATAATGAGA--TAGTACTCTTTAGCCCTTTGCCTGGGGATGCTTAGTGACATTATACATATTAAGGTTAAGATAAATTTCATA-TCAAAATATTAGAAGGCTGGAGATGTACACAGTTTACATTGGatagatttttcaaagaaattatgtCCAAATATCTTTGGAGGT-TgctatagaaaaaaagaataaggaaaatatgTCACCTTTTAGCCAATGTTTTATAAGAGGAATATTTGTACATGGCCACTGTTGGTGCTCTTTTGTAGCAAACTGTCAACTCAGCAAGGATGAGCCTATAATACTAGTGCTAAGC----AGGGCATTTGACCATAGCTTTAGTTTGGATAAGAGCAAGTGGTCACATTCCATTTACAGATGTAGACTGTTCTCCTTCATGGTCCAGTGTTTTGGGATAAGCACCAAGGAGGTGCAATGTTGGATCACTCGCAAATCTTGACTTGAAGAG-TTGCACATAGATAGAAAAGATAAAGC

a score=28443
s chr3            97506827 781 + 160039680 GGTCACAGCAAcagaattct-tgaatgtgttataatgccctgggtcatataccttaaagggataaattcatggtatctgaattatatcttaataGTTTTTCTCAGAAGAACAATTTACTCTTGAATTTGAATTAAGTAGAAAGAAGCTGAAGCTACCGAGCTTCAAATGTTTGATGACATTTGTTTGGT-------CTGGATC-------GTTGGCTAGGAAGTGTGGTC----AGTCAACCCGACCTTCCCTGCTTAGCTGTAATCAT----AGAGAA---GTTCGCTCTCTGCCTTGACTGCATTATTAGTCTGGAGGCTACAATGGCTGAGCCTGGCTCTTTTTATTGCCCATGCAAATATGCATTGAGGCTCTCAAATAATGTACAGAGCCAATAAACATAATGAATAGATTAATAATAAAATCAAATCATGAAAGGAAAAGAGCAAATGACTGGCGTGCGCTGTTGTCAGAAAAAATTCACAGAAGTAAGAAAAACAGCCTGTTGGGTTCTGCTGCTAAGGAATGGCAATTCATTTAGCAAGCAGCTGCCTTTCCAGAATGGATTGTCTTCTGATGAAAGTGATGAATATGGATGCACGAAAGGGAGGAAGCGGGGGCTGGAGAAAGATTACACGCACAATAACTCAACTGATTCCCGTCAAAGCTGCACTGCTGAG--ATGACTCAGCATGATGGGCGGG----------CACTTG----------------TTTGTCTAC---------------------------AGCAACCTTTAAGGCCAGAGAAAAGATGTGGTCCACGAGGATTTAAG-ATGGAGAGATTTTTGTAGTGATCCATCACTAATACATTTTA
s HiC_scaffold_1 107261754 837 - 233722169 GGCAATAACCACACAACTTTGTGAATGTACTAAAAACCAGTGGAttgaatactttaaaatgataaatttatggTATCTGAATTGTATcccaacaattttta--aaaagaaaaatatatccttGAGTTTGGATTAGGTAAAGGGAAAGTAAAGCAA---AGC---AACCACTTTATTACATT-ATCTGGTTATTTGACTGGATTATGTTGTGTTAGCTACTCAGTGTGGTCCAATAACCAACCAAATACTC---ACATAGTCTCAGTCAGGTAAAGAGAAAAGGTGCATTCTGTGTCTTGACTGC-CTGTTAGAATGTACAGTATAATGGTCAAACCTGGCTGTTTTTATTGAACTTGTAAACATGCACTGAGGCTCTCAAATAATGGATAGAGCCAATAAACA--ATGAATAGCTTAATA-TAAAAccaaatcatgaaaggaaaagagagaaaaactggcGTGCACTGCTGTCAGAACAAACCCACTGGAGTGAGAAAAACAGCCTGTAGGATTTAGCTGTTAAGGAACTGCAATTTACTTAGAAAGCAGCTGCCTTTCCAGAATGGATTATCTTCTGATAATAGTGATGAATATGCATGTATGAAAGGG-----GAAGGGGCTAGTTAAAGACTGAACTCAGGATAACTCAATTGGTTTCTTTCAGAATTGTGTAACTGGTCCATAAATCAGCATTATCAGCAGATTATTCAGCCCACTTGCTGTAGTTCAAGCACACTCTTCTACCCTGCTCTCCATATTATATTATCAGATAGCAAC-----ACACAAAATGAAAGACTATTCCCAAAAGGATTTAGGTGTGGGTgactttttacattgttttgtcatcaatatatttta

a score=89362
s chr3            97521917 3894 + 160039680 [encoded data, 4102 characters]
s HiC_scaffold_1 107267078 3646 - 233722169 [encoded data, 4102 characters]

a score=22857
s chr3            97560248 1223 + 160039680 gctTGAAGATAGCTGTTGAAAGCCAAGGCTTCATATACA-AGGCGTGATGAACCACAGCTTATATGGCCTTCTCTCCAAGATTTCCTTTTCCAGCGGTTCTCTGTCCCAGGCCTTCTCCAGTACCGCT------------CACAGGCCATGCTATGCCAGCCAGGAGCTAC-ATACTGAAACTAAACTAGATTT-CTAGGCGAAGGAAAGGATATTCTCAGAGTTTTCTAAAGTCACACTTGGCAGGCCTCCAGGCCAATCAGCTTTCTGCAAGATGCCA----TGAGCAGTATAAAGACGGGCAGGGGCTCCTCACTGGAGTGGATGCTTGGAAAACCTGTGCCCAGCCTCTGCCC-TGGGCTCAATTTGAAGGCATGAGTTGGCTGAAGTAGCTTCTTTCCCCCAAGGCCTCCCTGCCCTGTCTTTCCTCAGCTCTCCCTAATCACACAGCCAGTCCTGCATTCTGTACAAGACTCTGGTGGAGGGTAAGAAAA-----------AAAGCAACATAACCATTAACAATAGGCCATC-----TATTATTATTATTATTCAAACAT--AGGCAATCTGAAGCCAAAGGGCTTCCCCATATACATTGTGTGTTCCTGTATTACAGGTACTGGATCACAGTTAACACTTCCAGAGCAACAAAATTAGAATTCAGGAAA--GACTAGCCCAGAAATTCCAGAGCAGAGAATATGACCAAA----GATAGCCTTGTTTCCTGAAAACTAACAGTCAATCTGGGAGCAAGAAT--CTAACTGGTTGCTGAAAACTGGACCCAATGCTGGGCTGGTTGCTAGGGAACCAGTGGTGCTGAGGAGGAGGATGCAGGCTGTGAATGGCGG---------GCCTTACTTCTGGGAAAGTAGTATCT-GCAGAGATGGTTAAGGGAAACATATCTCATCACTTTAACTCAACTTTACCCAAGC-----GCCTGGTGCTTGGATGATCACTGCAAAACA---------------------CTTCATGCCTTCTCTTCAGATCA-GAAACTCTTCTACTAATGTCAGAACTCGTGATTGTCATGGTTATGTGGTGTAAATTTCTGAC---------ACTGCACAAGCACATAAAATGTGACTTTTATA-------------TTAAGGCTTT---ATAGGGACATAAATCCTTTAGGGACCA-CATGGAATGCAC--------GTAAGGATCTAGGTAAAAAGATAGACGTTCTGTATA----TAGAACCTAGAGGTTAATCCTGTTGTTTCTAGCTAGTTT-TTTGGACACAGC-TTACAGTTTTAA-AATGCTGGCCTACAG-AGCCAGGTCTTGAGAAA
s HiC_scaffold_1 107325571 1294 - 233722169 GCTTGACAACAGTTGTCCAAAAGTGAGATTTCACCCACAGAAATGTGAGAAGCCACTACTTATACAGTCTTCCCTCTACAACT-CTTCCTCTAGTGGTTCTTGATCCTTGGCCTTCTTTAACACTACTAGTCATTATGTACAGATTTTATGCTATTTCTGCAATTCTCTCTTGTATTGAAGCTTACTTAGATTTGAAAGGTCAGAGAATGGAGATTTTCTGGTGTTTTTGAAGTCATACTGAACAGGCCTCTAAGCCAATGGGTTTTATTCTGGACCCTGGTGCTGGGTAATGCACAAA-GGGCAGGTGCTCC--ACTTGACTGGat--caagaattttatttcttagaCTCTACCCCTGAGTACTGTTTT--------------CTGAAGATGCTTCCTTTTCCCAGAACTGCTATGCTCTATTACCTCTCCTATCTCTTTAATC---TAGACAGTCTTTCCTCTGGAAAGAATGTCTGGTGGTAAGGAAGAAAACTagatacagaggaaaaaaaaaacaatgaccataaaactatcagaaatacaaaatttattaAGCAGATATTTATGTAAACTAAGGCCCAGGGGCTTTCCCAAACAAGTAACGCATCCCTGTATTATAGGTACCAGATCAGAGT-AACACATCCAGAAGAACAAAGTTCAAATCTAGAAAACAGACCATCTCAGACATCC----------------ACCAGATCCTGATA--CATTTTTCAAGCCCTCTGACAGTTACTCTAAGCAAACTGCTTACTAGTTGGTTGCTAAAGACCAGGTGTGGTACTTGGCCAACTGTTAAGGCACCGGCTGTGTTGAGGAGGAAGATGGGGACTGTGAATGAAGGACAGGAGAAGCCTTGCTTCTGGGAAAGTAGTATCTAGTAAGGATGGTCAAGGAAAACATACTTCAAC-TTTAAACTCTACTTTATCCAAACTATGAGTtccctattttaataaatattg--aaaCAATCATGTTAAAAGTGGTAtgctttaattacttttctctgtaTCATAAAACATTTCCCATATTGTTAGGACTAATTACTGC--TAGTCTTGTACTAAACTCTTCAGATTCTGCTTGAACTGTGCAAGTATAAAAAACATGACTTCTGTAACTTCTTTTTTCTGTAAGTTATTTAAATAGTGACTTAAGTA----GAAGACTATCATTGAGTGAACTAATTTCAATAAAGATCTATGT-AAAAGATGGA-ATTCTGTATGATTTTTGCAATTGAGGAttaatttagcttttttt-tttagtgcattTGGATATAGTATAATAGTTCTAACAATGCTAACATACAGCAAGGAGGGCATGAGAAA

a score=29108
s chr3            97562345 1429 + 160039680 TTAAATCTATTTCTATGCTTGCAGGAATGCTTGGGTGTATGTATTTTCTTGGGTGT----------TGAGTGTATACTCTGGAT-CATACAAGCTAGAAAGTGTCTCTTAATTATGTCTCATT-GAAGAAGGACAGAGTGAAGGACGTG----ACAGAAGACAGCCTTGGATTAAATAGCAATACTGGGAAATGCAGCACGACTTTCCTCGTTGTTTGAAATATGTATAATCAGACCACAGAAGGATACATGTAAGTTGGGATGCCTCGTGTAGCCAAATGTTTCCGGATAAGTCGTTCGGTACCATACCAGTTAAAACCCTTTGTAGCATGTCCAATTCGTGGAAGATGAACGCTTGCTATTGAAAAGAAA-----AGATTATGATAA------------TCATATGATAATTATGAAGAGATAACATGATAAACTCAAAATATATACAGGAGAAAATAATTATTGATGGTTTCATGCAAAGCATACAATTGC-AATGTCAAAACTATTCTGTGTAGGAAACAGAAGtgtagagagagtatctgacgtctgtgagaatatggtgcctg-----ccaataatacatctggtggccgatggcttggacaggacacgggagagagaattctgagacagagccagg---tggaaagatttgctgggaagacgtgaggagaca----aacatgtggtatctgagcacaggtgaccagccatgtggcagaGCCttctgggagcatggggccgggaagaagaaccagcc-ctaacatcgacaTGG-----AAGAGGGGGAAAGATTTTCTGTTGAACACAAGAACCCACAGGTTCTCCAAGTAAACAGACGGGATGGGCACAGATTCTG-ACTGATGGGCAAATCCTCCCAAACGTCAAGGAATTCCACAAACACTGAGACACACTAGGCTTGGACAGACAGG---TGAGGAAGTGAAGGACTGCTTCGTAACCATGACAATGCACAGCGGACAGACACAGCCCACAAAGG---GAAGGGCTATGTAGGAACAAAATGATGTGGGTGCGACCCCTG--GTTTGATTTTACCAAGCACATCAAGGGGAGTCTTGACATTTCGTGCCTCCTCCCTTCCAAAGTCACAGCACATGTCTGG--ACGGAAGTTCCTCTCAAGCTCAGCACAGA-GGGAAGGCTTACCTTTCTTTTTCTTTGCTGCTAAAAATATCTTCTTCAGGCCCTCTTCTAGGGCTGCCATCTTAATGCCAGACAGGACATTGGTGCGATCACGGTGCTGAGCCACAACCAAGGCCAACTGCA---------------------GGAGTAAGGCAAGGCAGTCACACTA-CCAGCAAGTGAGCGGCCAC--CAAGGAGCACAGGCTGTTACGGAGGACCAGGGC-TCAGCCCTACCCCTTCTGGATGCTGCTTGCTGTCTGGACAGCAGTATCC-TACAATGTATGGCATGACTGCCCGTCTTATGTCATGGTAACTTATGTAGGCTTTTCTTTCT--TGTTTCAAGAT
s HiC_scaffold_1 107327203 1358 - 233722169 TTTAACCTTTCCCTTGGCATCCAG-AATGCTTGGGTGTATTTATCTCCTTTAGTATATTTATCTCCTTGGTGTACACACCAGATATACACAAGATAGAAAATGCTTCTTAATTTTGTCTCATTTGAAGAGAAGCAGAATAAAGAATGTGCAGGAAAGAACATGACTGTGGATTAACCAGCGACAACAGaaaatataacaca----ttttctttcttcagaacAAA-ATATTAAGACTACAAAAGGATACATGTAAGTTGGGATGCCCCTTGCAGACAAATGTTTCCGAATAAGGCGCTCAGTACCGTACCAGTTAAAACCCTTTGTGGCATATCCAATACGTGGAAGATGAACACTtgctattaaaacaaaaacaacagatcAAGATCAAGATGTCTTCCCTCATCTCAAACTGACTAAcggata------------taaaatatatacaggaGAAAATCACTGTTGACTGTTCCACTGAGATTATAAAGTtataaatgtcaaaaatattcTGGGAAGAGGTTGGAA---TAGGGAAA--AGTTAATTGTGTTGAACATA-AATACCTACAGCCCCAGAAATAAGT---ATGTGCAATGGC---------------AAAAGAATGTTTGGTGGGGGAGTCATAATCTAAAAGGATTCTTAAATAAGCAATTACCAAACACTACAGCATACTAAGtctgaaaacaa------aactaaatg--------tttTGGCAGTA----------------AACTATCCACTAAGGTTGACTGTGACTCTAACAGGAG-----------------ACATAAGAAAC-----ATTTCCCAACCATACA--------TGACAAAGCTGCTATGTCTCTAGCCCTGTatcctcatctataaaatcatgataaaaaTATCCAG------------TGGATGGACATGGTCCACAGAGGTAATGGAT-----------------------------ACAGAAGtgacctaaaaaggaaaaaaaggctaCACAAATACAATATGGCGTGGTTATTACTTCTGGTGTTTACATTTGCCTCACAAATT--GAGCAGTCTTAGCATTTC---TCACCTCTCTTCAAAAGTCACTGCA-ATGTCTAGAAACAGAAATCTGGCTCCTCCTAAGCACAAATATAAAAacttacctttctttttctttgcagctAAAAATATCTTCTTTAGGCCCTCTTCTAGGGCTGCCATCTTTATGCCAGACAGGACATTGGCACAATCACGGTGCTGAGCCACAATCAGAGCCAACTAAGAAGAACAaccattaaaaaaatgaagtgacATGAGACAGCTACATTATCCACTAAGTGACCTGCTCTTGCAGGGAACACAGTTGTGCATGGGTCACTTAGACTTTGGCTCTACC---TATGGATGTT-----CTTCATGAACAACAATGCCCACTAAATGTATGACTCTGTGCCCCATCTTA------AGTGGTCTATCTCATATTTTCTATCTTATGTTTTAAGAT

a score=8705
s chr3            97566563 338 + 160039680 GTCTCCAG--CAACACTCGCAATATGTTTCTAAGGCTGAAGCCACCCAGTAGGTGG--CATAGATGTGCAGACCTAACAAG-CTACTGTGCTCCTGCAGAGGCTGGGCAGTGAGCATGCACAGGCTGGACAGCAGAGGTGTCAAGAGGAGCTGTCACTAGCCAAGCTTTAGGCCTGGC--------ATGTGACAGGTTT---TTTACTTACCAGATCTTGCCCCTTGTCTCGTGACTCTTTATCGTCGATAGGAAATAGAAGGACATCACCCAAACTCAGGTCTGAGGTTTTAAGAGAGA---GTAAAAAGAACATTAAGTT----------TCTGAAGGGTT------------------------CATTTTCTGACTCCAATCACATTT
s HiC_scaffold_1 107330070 374 - 233722169 GCCTCCAAAACAGTATGCAAAGCACTTTTCTATAATTTAAGCTTCCCAGTTTGTGGTTCTCTGATATGGTATCCTTACAAAATTACTATAATACT--AGGGAC--AGCAGTAAG--------GGATGGA-----GAGGTTTCAAGAGACATTGATATGAATCAAACTTTAATTCTAGTGAAGATGAatcttctagttttgtttttacatacCAAATCTTGCCCTTTGTTTCTTGACTCTTTATCATCAATAGGAAATAAAAGGACAGCTCCCAAACTCAAgtctaagattaaaaaaaaaaaatgaaaagaaaatattaaatttactAAGAACTCTGAAAGGTTATTCTGCATGCTCTTTATGCTTTCCTTTTCCTTACTCCAATTAGATTT

a score=68923
s chr3            97567273 4568 + 160039680 [encoded data, 5220 characters]
s HiC_scaffold_1 107331418 4845 - 233722169 [encoded data, 5220 characters]

a score=5281
s chr3           97568036 171 + 160039680 TGTGCGAAATTACCTTCACGTC------GCTTATTAAATATGAAACATATGTGAATTTTGTACTTAGACTTGGATCCCAACACCACAG----------------ACTCATACAGTAC--ACGCAAATATTCCGATTTTTCTTTTTAAATCTGCAATTTGAAACATTTGTGGTCCCAAGCATTTTGGATGAGGGCT
s HiC_scaffold_1 71519812 191 - 233722169 tgtataaaattacctttagGCCATATACGCATGTTATACATGAAACATAGACGAATTTTGTATTTAGACTTGAGTTCCACTACCAAGACTTGAGTTCCACTACCACTTACAttgtacatatgtaaatattagaa----gcacaaaaaatccaaaatctgaaacacttttgGTTCCAAGAATTATAGATCAGGATT

a score=3734
s chr3           97568126 89 + 160039680 AGTACACGCAAATATTCCGATTTTTCTTTTTAAA----TCTGCAATTTGAAACATTTGTGGTCCCAAGCATTTTGGATGAGGGCTACTCAACC
s HiC_scaffold_1 21112312 87 - 233722169 AGTctatgcaaatattctaaaatcc------aaAAAGCTCTGAAATCTAAAACATTTTTGGCCCCAAGCATGTTGGATAAGAGATACTCAGCC

a score=21645
s chr3            97572403 520 + 160039680 TTTTATAGTAATTATGCCAGAGTGCAGTTCATTTATTACATC-CAGTCAACACAGGCTTGTTCCTTATCAACCCATCCT-------------GACCCCAGCATCACCCTCTGCTTTCTTAGG-TAACAGATTGGAAGAATCTACGGTGTTATAGAAAAGCGATGGCTCTCACGCTGCCTTTGTTCCGGAGGGTCCGGCCCCCATGGCTTGTCTTCTCTAGAAGGGTTTTCTGAAGATTCACCAGCTGCTCAAATGACTTTCTGTCTTCCTTACTGGGCTCCTTAGAATAGTCTCTACCTTCAAACAAGTACATGTGGTTTTCTAAGAACACAAAAC-CAAAGAAATGGATGTT-AGGCGCGGGGAAACGGATTAATACTATTCAAAGCAGCTACGCGGGAGAACAAGGAAATGGACCATATTCTAAAAATGAGACAAGACCAGCTTATGACCACACCGCTTCCCTTCCTGTCATGAACACCTTTGGGTCCTGCTTGGGAATCCTGTGTGTTCTCTTTTCATAGGACAGAGCACAGTT
s HiC_scaffold_1 107336269 527 - 233722169 tttcatagtttttatacTAAGACTTAGTTAACTGATCACATTTCAACAAACACAAACTTATTTCTTAATGAATCATCCTAAGAGAACAAAATGATTCcagcttctttttttattctcttaggATGACAGTTTGGAAATACGTATGTTTTTAGATAAA-TTATCAGTTCTCACACTGCCTTTATTTCGGAGTGATCGGCCCTCTTGACTTGTTTTTTCCAAAAGGGTTTTCTGAAGATTCACTAGTTGTTCAAACGATCTTCTGTCTTCCTTAGTGGGCTCTTTAGAATAGTCTTTACCTTCAAATAAGTACATATggttttctaaaaatgtaaaacacaaaggGTAAAATGTTCAGACACTAAAAGACAGATTAATATTATTCAAAGTAGTAATTAGGGTAAACAAAAGAATAGACCATATTTT--AAATAGGCCAAGACAAGCCTGTGACAAAGATATTTCATTTCCCAT------CACTTTTGGCTTCTGCATGAAAATTC-ATATATTCAGTTTTCAGAGGACAAAGCATGGCT

a score=38448
s chr3            97573881 2280 + 160039680 TTTGTAACTGTGTAAAAGGGCAAAGCACGCATTTGTAAGGCTGTTTTACAGACGG----ACGGAAGCTTGGTGAGGCGGGGTGAACAGTGAAGACCAGGAATCAAGCGAGCATCATCCGTGATCAGCACCCATACACAGGTGAGGACAAGAGACCAA------GGCACACTTAACAGCTCATGTTGCCAAGCCGTGTATTTTCACTGGAGCGCTGGGAAGTCAGCTATAAGTGTGTTTTCCCTGGAGGGTACAAAAGCAAAACATTTTCACTCCCAGGAGATCAATTGCTTCACACTTGTACCAAACTCTAACCAGCTGTAATTCTAATTGGCATTTGCTAATTAAATCAGCGGGGGGCTTTCAGTGAGATGCTCTATCAGCAAGCGGAAGAGGAGAAAATAAAGCCCTGAGAAGTGTCAAA-ACAGTCAACATGCGTAGCCACAGACACCATGAAATGC-TAACTT--CTAACA-------TAAATGTGCCTTTGAAAAACCCTGGAGTTCACAATAAACCAATCATATTTGGGAT----TTTCTGCTGGGGCTGCTTTATTGACTAGTCTTTCATAGCCACTGATGCTGTTTTAAACCCTGCACCCTCAGACCGCAGCCAAGAGAGGCTGAAACCACACCCCAGACCATGggtcctcaacctgggtctcaacccttctgggggttgaacgaacctttcacaggggttgcctgtcagatatccttaccatcagattcataacagcatgttacaattcataacatgttacgattcataacagcaaaagttaaagttaggaagtagcaacaaaaataactgtaaggctggtggtcatcacaacaggaggaattggattaaggggtcacagcgttaggaaaggtgagaacctctgCCCTAGACCCTCATATAAACTCTGCCAGTTCAGCCACCTACCACACAGGGAGACTAGACCCGTTCATCAAAGATAAGCTTCCAAATGTTAAT---TCTATGGGGGATTTTTTTTCCTTAGCAGTTGGCCTGCCTAAAAATATGTAATTTTTTAGCAGTCAGATTGACTTAAAAGTGTAATGATCTTTCTGAAAACATGGCAATTTTATTTTGTTCTGGCAAATGTTAGAAGAATAAGCTGAAATTAATCTAAGTGGGTGAAAAAATGGATGTAAGCTTTGGCATTTAAGGTAATCAAATGTAACTTAAAAATACGGCcacatgcatctatttctcccttcacctgagacctctaaatgacagtaacggggttttaagagagacataTGAGGCGATGGTAAATGGAA----------------------ACGCTCAGCA-CTCTCCAGAGGGCGTGCAGTGGCTGCAGGG--AACAACAGATCAACATGAGCCACGGAAGCAGAGGGGCAGTGCTCAGCCGAGGTTAACCATGAGGACA--GACCCTCTCCACCCT-CCAAAAGCCTAGCGTTCACAAGTGCAGAGTATCACAGGTGGGGCCTGAAGGGAATATCTGCATGCCCCA---AACACAGACACGCTCAGCCACGGATATACCCTCCTTTTCAGCTTAAACCA--------------AAGAGCTTATGTCAACCCTCA--CTCTGCATGG----ATAATATTAG---------------AGAATTTGTCT------CTACACTGGCC-------AATTAAACAC------TTCA------------TATATGAACGTG--------TAGGACGGCTCCCTCTGTGCAA-------------AATCTGCTCACT---------------CATGTTGG--AGCAGGGCCCTGGCAGTATCTATGCGCTCATGGCAGGGCTGCCTGTTAGCCTCCTGTCCCCATACCAGCA-CTCCGGCTAGAACACCAGTGGACACCAGGCATGTTCTAGGAGA---CTGAGCAAGAATGA-------AAAGATTCCAAAACAAAATGGagaaagagagacagacagacagacagacagacagacaACATGAAGAAAAAGGCAAGCCATGGACAAGTGGGCAGGGGATCTTTTTCAAAG-TACAACCAATGTCCTTCTGGTAATCCACGTTCTAGTCCTGCAACAACAGTTCTCAAGGAAGACTCAGGGCAGCATCACAGCCTTGAGCTGACAGCAGGATACAATTA----AATCGGAGGACAAGAAAGCCTCTCAAAGAATACAAATGGGATGCTATCATGCGAATTTTAAAGATCAAACATGACAAAGGTCAAAGAGCAGTGTCCCCTCAAGTG--ACCAGCTGCCTG-----------------GCATCCCATGAGAATCCC---------------CCCCCTAGTCCATGCCTGCTATGAAACGAGGAGTCAGAAAGTCCTATAGACTTGCATT-TGCAAGTGAACAGAGAGATGGGCACCCAATCGGGTGCCAACAGGTCCAGAGCCAGGCACACACT-----------GAACAGGCGAGCGAGCAG---AGGGGCTCCAGTAGCAC
s HiC_scaffold_1 107337759 2127 - 233722169 TCTGCAATTGGGTAAAAGA-TAAAGTGGACATTAATAacaccattttacagatgaggacacaAAGATTCAGTAAGGCTAGA-GATCTGCTAAGACCATGAATCAAATGATAACCAGCCACGACCAGCAACCACGGACAGGTTAAGACAATGATTCTATAGTGCAGTATATTTAATAGCCCATGTTACCAAGTAATGTATTTTCAC---AGCATTATGAAATCAGCTCTAAGTATGTTTTCCCTAGAGAGCATGAAAGCAAAACATTTTCATTCTCAAGAGATCAACAGCTTCACACTTGTACCCAAATCTAACCAGCTGTAATTCTAATTGGTATTTGCTAATTAAATCAGCAGGGGGCTTGCAATGAGGTACTCAATCAACAAGT-----AGGGGGAGAAAAAGAGCTGAGAAGGGTCAGATATGATCAACATACGTAGCTTCATGCTGCACGAACTTCTTAACTTAATGAacacatgttttaaaaacatgtttaaaaaaccTTGGCATTCAAgataaaataatctcattttttatttaattttgattgggactgcttAAATTACTAGG-TTTCACATTCACTCGTGTTATCTTTAATTTTCCTCCCT-------------------------------------------------------------------------GGCTTCAATGTGCAGTCAATAGG--------------------------------------------------------------------------------AAGTTAGAGC-------------------------------------------CCACAGG-------------------------------------------------TCTGGATCTGCTTCCATATCCTGCCAGCAGAACCATCCACCACGGACAGAACCCAGACCCATTCATCAAAGACAACATTCCAAATTTTAATCCATCTAGGGAAG-------------------------------------------TTTTGGCAGCTGGACTGGTTAAGAAATATAATCATCTTTCTGAAAACACTGCAAATTTATCTTATTCTAGTACATGTTAGGTgaataaattgaaattattctaGATGAATACAGTTATGGGTTTAAACTTTAGTATTTAAGATAATCAA-------TTAAAAAT--GACTACATGCATCTATTTCTTCCCTCGTCTAAAACTACAAAATGATAgtaaagggatttttaaaaaagtgtatgaggcaatggtaaaaaaaaaaaaaaaaaacacaaaaaaagtaaGCTCAACAGCTCCTCTGCAAATGT-TAGTGATTGAAAGAATAACAACAGATTA----GAACAATGGATGCATAGGTGCCTAGCTAAG----GGGTgattctgagaacatggacccTCTCAATTCTCCCAAAAGCTTAGGCCTTACAAATACACGGACTC---------------AGAGAAGATCTGCACATCAAATATAATAGAAATACCATGAGCCCCCAACCtatccttttttctccctctctccattttttttttttttaattgtgtat-tGAACCCTTGGCCtcaacactgagctacaaccctaggctcctttttgaaacagggcctacctaagttgctaaattgttcaggggGAAATTGAATTTGCAGTGCTCAGAGTGTtaagattataggaatgtgctTATATCTGGGTTG--TCTTTTTATCCAAGTAGACAGGTTTTACTCTAATCCCTGCCTCTTCCAAGGAAGATATTAAATAACTTGACTTTGGAGAAAAGGAGCTACTCACCATAGACCTGCCCTTCCATTTTGTGGGCTTTTACCAGCATCTGCGTTGAGACAGCCAGAGCACACCTGGCA--TTTTAGGAAAActatgaacaacaacaacaaaaagagagaTTCCAAAACaaacttcaaataaaaagaaaaagaagaag-------------caactGGAGGAAAAAGACACA--------ATGCAGTTAGGAGGcgttttaaaaagatacaataaatatCCTCCATgcgttatatttttaaaagctgtaatAACAG-TCACAAGGTAG---------GACGTTATGTTCTTgaagtgaaaacagaatacaagtaaaacaagcagaaaacaaaaagggTTCTTACAGAATATAAATTGGATTATA----AAGAATTTGAAGGCTAAAGTATGAAAAAAGTCAAACAGCAGGGTCATACAAAATAGTATCAGCTATCTAAATTCTAGTTTTTTCACATATTctataaaaatcacaaagatcATAACAAAATCACTAACCCATATCTACGACAAAATTAGGAGCCAGGGAATA----AAACTTCCATTATTCAGGTTAGCAGAGAAATGAGCATCCA-----GAACCAACTAAGTCAACTTCAAACCCACACGAGAGGAGAGAAAGACAAACGAGAGATTAGACAAAGTGTTCTAGCAGCAC

a score=18491
s chr3            97580996 1021 + 160039680 ATTCACTTCCTTCCTCTGGTTCTAGGCTTCCTCCTCCTGCTGCTGCTGCTGCGGGCAGAGCATCAGGGGTCCACTGGCCATCTTTGGTTTCTCCCAGGATGGACTTCAGGTCTATATCCTCCATGGAGCTCCCCTCAGAGGACAGCAGTTTATCCAAGCCGAATTTGAGAATCTCACTTAACTTGGACAGAGAAGACAAAAAAAGTCTAGTTAATTCTGCTACACAGAAAAACTGTCTCaaaaaaaaaacaaaaaacaaaaacaaaaaaacaaaaaaagaaaGAGCTGTAGGGATGCGGGTGACTTGCT-----CACGGCTGGGACACGTTCCTTCTCTGATGGACAGCCAGCGTTTCCTGT---CCATCACAGGTGAAACACGCCAGGCAGGCTTTAACAGCTGGGTGATGGGTAAGCAGATGGGTGATACAGGATTATCAGAGTGACTGACTTTCTCAGCCTCCATAA-----------------------------TGATATACTT---------------------------AGAATAA--------------GCTTCCTATGCCCTTTGGAAAAATACGGTCATTTGAACAT---TTCCTAGAGAGCTCAAGAGAAGTC--AGACTTGGCTGG-------------ACTCTCCCTGCT-------------------AACCCTCCAG--------ATCTCATCATCGGCTGGC----TCCTCTGGAGACCTGCTTTCCTACCCCAGGGTGCCACGGACACCACTGTGGCAAAGGCCGATTCCAA-----CGCCTGGTCAGAGA-----------------------------------------CTCTCTTCTGCTTCCTTCCTTCA-CTGTTCCTTGAGTCCCCTCATCC----ATTTGCTGTGACATCCACACA---AGGCTCAGATCTCCTAGCTCCCAACT-CTGCAT--------ATTCTC-----AAACAGTAACTCAGG----------------------------------CTCACTTGCATCTTG--CCTTTATGACTGGACAGTTTATCTCTA----GCTCACTGTATCTGTAACTTAGAAACCTTTAAGGTATACTATAATAGCTTGTAAATGCCTTAGACAGTTTGTTGACGCACCAACAT--CTGGATATATTTACATTTAATATTGCTATATGTAACCAATACAACTGGCTTTGCATTTGGCACTAAAACCCAAAGAAAGCCAACTACTTGTGATAGG
s HiC_scaffold_1 107342427 1167 - 233722169 ACTCACTTCCTTCCGCTTGCTCTTCACTCCCTTCTCCCGCGGC---------AGGCAAAGCATCAGAGACCCACTGGCCATCTTTCGTTTCTCCAAGGATGGACTCCAGGTCGATTTCATCCATAGTGCTCCCCTCAGAGGACAGCAGTTTGTCCAAGCCAAATTTAAGTATTTCAGTCAACTtgaatggataaaataaaagaa-tgtgatTAGTTCTCCT------------------------------GAAAACAAACAC--------------------------TGGGCTATCAGCAATTTGTTAAGTAAACAACATAGGCACTCTCCTTCCTTAATGGACAGTCAGCCTTTCTTCTctcctgtcacagacaactccaGCCAGG--GTGTTTCATAGCTGGACACTGGGTAGGCAGACAGGTGACAAATGATGATGACAACCACTGTTTTGACAATtctccacaaaacaaaaaaatttataagCCTTCctctatttatgtatttatttgtatatttacttatttcagggtaaaaataaaactgatttcatttgttttctatagCACTCGTGAA------TTCTTTTGCACAGGCATTCTGAGCAGCCACAAGAGAAGCCAGAGATTCTGGTGGCTACTCTCCCAACACTCCCACTGCCAGGTATCTTAGAAAGAGGAAGCTCCACAGAGTATTTCACCTCATCATAAGCTGACTCCTTCCTTTGGCATTCTGCTTCTCTATCCTAGTGGTCTAAGGAAACCCCC-TGACAAAGACCAGTAATAACTGATCACCAGACCAGAAAGGTTTTCCCAGGATGTGTCTTTCTGGCTACTCCTCAGCACTCACTATCCTGCTGTCTCCCTTTATCCCTCCCTAGGGTGCCCTCAGCCTACTTTTTACTACAGGAACCACCCAGAGAGCTTAATATACTCTGCCTTTCAACTGCTACTTCCCTTGTGACTCTCCTTCTAAGCATTGAATCAAAAATTCTGAACTAAACTGGATTCACATCCTGGATCTTCATTCGCATCTTGTTCTTTTACATTTGAGTTAATCATCTCTAGATTGCCTATTTTGTGTATAACTTGCAAACCTTC-AGGTATTCTGTAACAACTCACTAA-ACCTTAGCTAGCTCACCTAAGCATGAGCATTCCTGGATATGCTTATGCTTAACCCTGCTA----TCACCAAGACA----------CATTTggtaccaaaaacagaacataaccATCTATTTATGGTAAG

a score=13142
s chr3            97582325 594 + 160039680 aaagaaactaagacaGAGGTACAGAATTGACTGCTAT-GATTAGCTTGGGTTTTGTTTGTAATCCTCCAGTTTTCAGTG-TCCTCAGACATAACTAATAGAGCCCTCACTTTGAGAAAAGCAAAGAACGTAGATTCCTGAGGTTATGGCGTCTGCTTCAAGACAGGCAATCAACGACTGATGAGGCGTGGGTTTAAATCCAGGTTAGACAGCCCAGCACGCAACTC-TCCCCCACACCCCCTGTGTGTGTGTatacacacgcacatgcacacgcacatgcacatgcacacacgtgtatcatgctcattttttacCCCCACAGCTCCCTGCACACAACAGGCACCAAGGCAGGC-------------------------------------------------------------------TCCTTGTCC---------------------TGATGAGCCTTCGGATCAG---AAGAGATCCTAACCTGGAAGTCGGCCTCGGCTGAAGGTTTCTGGGCTCCTGGTGTGAAATGACCTCCTTCTATGACCATGTTGGTAAGCTGCAGTTTGGAGGCCGCCTTCCTATACACGATTTCTTCCACGGTGTCGCGGCCGATCAGCCGGATGACTTTAACAGACCTGTGAGCGAGTCAAACAACAGCAGTGTG--ATAAGCATGTACGAAGTCAG
s HiC_scaffold_1 107344958 632 - 233722169 AAAGGGTCTGGGATTGAGGAAAGGAATTAATCATTATTGATtacattcagttcttttattcaAGCTAATATTTTTAGTAACCCTCTGAAGCAAC-AGCGGcatccttatttttaaaacaacaaaaagagtgGATCCATG-----------CCTATTCAGAGCCA--CAGT-GATGAATGATGAGGTTTCAATTCAAGTCCAAATGTGATGGCTCA-----CAGTTCATCCTCTCCATTCCGTGT-------TCTAC-----------------------CACTTtacttcacttat-------ttatttttacctccCATAGCACTCTGCACATAGTAGGTACTATGGCAGGTATGatttcagaaaacaaatgcaTAGCTGAAGATGGTAGATGTTTAATGCTGGTGTCTTTCACTTACATACTTATCCACAGACAGCACCAACTATAATTCATGACTATTCTAATGAGGACAACATACTCTA-CCTGGAGGTCAGCATCAACTGAAGGCTTCTGGGCTCCCAGAGTAAAGTGTCCACCCTCTATGATCATGTTCGTGAGCTGCAGCTTGGAGGCTGCTCTCCTATACACTATTTCTTCCACGGTGTCTCGGCCAATCAGCCGAATAACTTTAACAGACCTGTACATACATCAAACAAGTACAGTGTGCTATAAAAGTCTATGAAGcaag

a score=16243
s chr3            97583518 582 + 160039680 cttccttccttccttccGAGGTGGTTCTTAGCTCGCTGAATAAAT------AACTTCTAAAGACTCCTTATAATCCTTTCATAATCT-GACTTTT---TGTTCAACAAAATGAGTCTGGACT-ATGGTGTGACCCAGCTGATGCGGCTGCAGGAGCCGACAGCGACACTAGGCTCA---CACTGGGGTCTCTCCATTCCCCATTTGGTGCTGTCACCAAGGACTGTG-TGTCTCCCTCCTTCCC-AGCCCAGGGGTGTCTAACAGACCGAGCAAGTGGAAAACCATTGATGCCCAACTCACTCACTTGTTCTGGCCAATTCGGTGAGCTCTGGCGGCCGCCTGCAAGTCATTCTGAGGGTTGAAGTCGCTGTCGACAAAAATGACGGTGTCTGCCGCTGTTAAGTTCATGCCCACTCCACCTGGAACAGGGT-----AGGGAAAGTGTCACCCA-AGACAGACAAGG-ACGGGAGAATAC-GAT-GGTCCAGACAGGCTCTCACTGATGAGCCACAGTCAGACAG----------------------------ATGCTCGCCCTCAGTCCCAGAGCCTGGCA-TGGTCGCACTTGCTCCCCTAACCTCCTACGGCCTGATTTCGGAGGACTGAATC
s HiC_scaffold_1 107346499 630 - 233722169 cttcatttttttaaactgagttagCCCCTACTttgagaaatgaattttaataatttttgaaggTTCCTTTGAATCTTTTCAcaattttaacttttctcttttcaacAAAGTTGGTCTGGATTGATAATGTGACACACCCAACATGACGTGAAGAGTCAGCATCAAAGCT-GACTCAGGACCCAGGAGTCTCTTGAATCCCAGTTTGACATCACCACCA-GTACTATAATGTTCACCTTCTTCCCCAGACTAGAC---CCAAACAAGTTAAGGACGCACAAAAATGCCAATGCATAACTCACTCACTTATTCTGGCCAATTCGATGAGCCCTGGCAACAGCCTGCAAGTCATTCTGGGGATTAAAATCACTGTCAATAAAAATAACGGTATCTGCTGCCATTAAGTTCATGCCAACTCCACCTGAAATAATGCAAAAAAGGAGAATGGTCAGCAGCACACAAATGAGGAACTGGAAAATACAGATAAGGCTATCCTGGGTCATGCCAATAAAGTGCAATCAGTCAAGTCAACCAGCTTCACCCTTCAAAATGACATGCTCACCCCCAACTCCACAGCCTCACAGTGATCCAAAGAGCTACCC-AATTTCATATTGTCTGACTTGGCAACATTTAATC

a score=52907
s chr3            97584193 4640 + 160039680 [encoded data, 5351 characters]
s HiC_scaffold_1 107347603 4656 - 233722169 [encoded data, 5351 characters]

a score=9319
s chr3            97589895 140 + 160039680 CACCGCCTACCCAGAATACAGAAACGCCAGCAGCCTGTCCAGCAGGTGAAGCTTCCCACTGGCCTCAATCAGGTGCTCTCCAACTTCAAAGGGCTCTGGTTCCACACCTAGGAAAGAAAGA--ACACGTCTAGTAATGTACC
s HiC_scaffold_1 107361492 142 - 233722169 CATTACCTACCTAGAATACAGGAATGCCAACAACTTATCCAGCAAGTAAAGCTTCCCACTTGCTTCAATCAGGTGATCTCCAACTTCAAAAGGTTCTGGCTCCACACCTGGGAAAGAAAGACCCCACTCACAGTAATGTGCC

a score=20701
s chr3            97590208 1199 + 160039680 agacagagaAGTCAGCAGGAAAACAAGCTTAAGAACATGTCTACCTTCTCAGAGAATA--GACAGAACAAGCACAGTGTAGGATCTATGACTGGATCTTGGAGTTAAAAAGAAAAAAGAAAAGCATAATCTAAGAGGAT-TTTAGGAAGAATGGAGGGAAACCT--GCATAATGTGCCAGGTAATACTGATACAACAAAC-TGAGCATAAACCTGCCACCCTCACTGCAGCCAAAGACATGACTGGCACACCTCGCTGAGGGGCACACTACGGTCAAGGGCACACCTTGCTGTGGTTTTAGCGACAGACTGTTCAGAGA-----ACGGTGAGGAGGGAGCGCACTACCCCACTCACCATCGAACAGATACGGGTGGTCCACACACTTCCGAAGCTGCGTCAGGATGTTCTGGAGTTTGACTTTCTTGGCTGTCTCGTTCTCAAATGCATCTGAAATCACAAGGACGTGGAGACAT-----ATCTGACCATG-------------------------------------CGTGCCTCAGCTCTGTGTACCTTCCC-------------ACTGGACT-----------GAACACGCGTGTGACGCTGGCTTAGCCATCCCTCTGGTTTGAGA--------------------TGAACT--GGACACCTTGGCTATCCCTTTGCCAACCTTTACACTTCCCACTGGAACTGCTCGGGAGTCAGGGA--------AATCAAGAGA------------------------TGCTTCACTTCTGCCTCTCCCCCTCTCACTCCCAAG-CCTCCCGGTGGGTTTGAGTCAACAGCATTTTGCAGCTCGTTAAGCGTCCAATGGGCTGGAAAGACAGA-----------GGGCGCTCACAAGTGCTT--GCTTCAAGGCAGTAAGGGAGATGGGGCTAAAGGAAAGAACAAACT--------CTAACAACCAAGTCTGAGTTACTCTTAAGGGCCACAGCCACA-CTCACTGCAAGCCCAGCCCACCTGAGAATCCCTCACAGTCTAAAACTCCGGCCCCTTCTTGTACTTCTTGTACAGAGGGAAGGAGCCTGATCAC-TGAGCACTCCCTCCATGATAGCCACACTCTCTCAGCTTCT-------GACAGCCATA-GCCGCGTACCCAGGTCTTTCATCAGGATGGCCTTGTAGTACTTTTTCTGCAGAGCGGACATGCCGTGGTACACCACCACCTCTGTCTTCTTGGGGAGCTCTGTGGCTACCTGAGCTTTCACACGCCTCAGGAGAAATGGCTGCAAGAGCCTGTGCAGCTCGCTTGCTGCGTAAGGAAAGATAAATACGTAAGAGTGG---------AGAATCGAGGCGTTC
s HiC_scaffold_1 107367262 1253 - 233722169 AGACATAAAAGGCA--AACATCAAAAgttaaagaatatttataaattataggaGAATAAAGACGTGACAATT-----------TCTATGACTTtttct--ggattaaaaa---aaaagaaaagaaaaagtcataaggACATTTGGGTGGCCTTTGAAGAAATCTATGAACAACATATTAGATTACATTAATATACAGAACATGAGAACCAAGTAGACA--------GTAAATTCAGATAAGTCTT----------TTGAAGA---------------------ATTTTGCTATGATTTTGGCCACAGGAATATTAGTGACAAATAATGTGGAGAAAAAGAGCACTGTC----TCACCATCAAACAAATACGGATGATCCACACATTTTCGAAGCTGAGACAAAATGTTCTGAAGTTTAACTTTCTTTGCCATCTCATTTTCAAATGCATCTGAAAttttaaagagacagaaaaatggaaaatcaaaccaaaaaaaatttcCACGAATAACCTTACTCATTTCACAGACTATCCCTCACATGTATGTTCACTACCCAAACTGCCATGAACTGCATTCAGAATTCACGGCACATTCATATGAAATATTCTTAGccatcactttgttttgaaaaggAAATCTAAACTATAAATTAAACTAAGGATACTTTGATATTCCTTTTGCAaa-------atttccctctttaactttatGGAATCAAAAGACGAGACAAAACTGAAACAAACTCACAAACACTAAAATCAGACTGTCCCACACCTGTCCC-CCCCTGCCCACTCCTAATTCCTCCCAGTGAATCTGATTCAG-----TGTTACTATCTGTTAAGCATCTGACAGGGTGGGAAACTAAAAATCACATCAGGAgcatttgaaagtattttaactTACAGGCAATAAGGAAACCTGAGTGAGAGGAAA---CAGATTTTTCACTGCTGCCACACCTATCTGAGTCACAGAAAACAGACTCTCCTAGGTCTCACTGCA------GCAGACCCAAGTGTCGAGCATGTTCAAAA--------------------------TGCAAAGTGA----GTATGATCATACGACTCCACTCTGCATGAAAATCACATCCCCCTCTCCTCTCTAAATGGACAAGTGTGCTCCGATTACCTAGGTCTTTCATCAGAATAGCCTTGTAGTATTTTTTCTGCAATGGTGACATGCCATGGTATATCACTACTTCAGTCTTCTTGGGAAGCTCAGTAGCTACTTCAGCTTTCACTCGCCTCAACAGAAAAGGCTGCAGGAGTTTGTGTAGTTCACTTgctacataagaaaaaaaaa-----taagagtgagATAAAAGTATAACTGAGGTATTC

a score=28733
s chr3            97592979 1414 + 160039680 CCTCTTGAACTGTCATTAGCTCTTAACCCAGGAACTGGGAACACATAAGAACTCT-ATTCTTTCTAATGGTCCTGGGTTTGGGAGGCTCTCCTAGTTGGAGGGTGTTTTGCATCTAATCCTATTGGTCAGCTTTATAGCTTAGAAAGGTGGCAAGCAGATGGGC----------CCGTTTTAATATCAGAGTCAGGTATGGCTCCAAGGGCCAAGTC--CGTTACTCAAGACCACAGAGCTGACTGCCAATGTCATCAGCATTCAAAGCTGTTTCTTTTGGCATCAAATCCTT-TGTTCCCTCACTGGGTATCTTGAACTTCAAAAGCCATCCTAAATCAGAATTGCAGGACAGGTAGGAT-------------------------AAGTAACCAGCTAAACTGGAATCTCACAGAACAGTAAGTGACACTGTGATACAGTATGCTCGTGTAGTATTAGACTGGATGCCTAAAACTTATGAGGCAACTCTAAGCATGGGAAT-------------TACGTAGGAGAAATCTCCAGCCTGTAGTCCGGGATTTCTGCTGGAAAAAGCCGCTCCAACTCATACTCAACCAATACATACAAAATCATTACC------GCGTACC-------------AGCACCCTAGGGTAATATCACGGGGACATTCAGATAATTACATGGGACAGAGGGACAAAGGTACAAGAGAAAGC----------------TGCCA--------------CCTGCATGAAGGATAAAGCATGCCCCCTA--------TCCCAacacacacacacacacacacacacacacac------------------------------acacTCCCATCTCTC----------------TTAAACTCGTCATTTTGCTGCATGGTTAAAAAGAAACGCCAGCGCTACAGGACACTGAATAT-------------------------------------------------------------------GATATGA-ATATGATATGGCCTGTG-----GTAGGCACCCTCCGACCTCTTCCAAAAATGAACTAAACAAGCCCCAG---AGAGTCA----AGCATAAGCGA-----------------------CAAATGAAGACAGCGAGGCTTGTAGCACTGGCCTTCTGTTTGTGGCTCCTTGCCTCCC----GGGTCTCCTGGCTG-----TCTCCCTTCTTTTCTAACTAT------TAGACTTGACGGCGGCTTCTGCGCCAAACCCTCTTGAGGACGATTAGGAAGAGAGAGACCTGCCTGATTTGGACTCTTTCTCGATGTCCTGGTAACGCTGAACGAAATCTTCCACCTGTTCTCTGCAGAAGAGGTCAGGCTCCACGACACAGAGGAGGGAGTAGAGCTCCCGGAGGCTGTTCTGGATGGGCGTTCCGGTGAGCAGGAGACGGAAGACCGCTGAGAACTCAAACACACAAAGCAGCGAAATTAAACCCCACACTGGAGGAAAGACCGGGATACCCA-----------------GCAAAGAGCAGCACGCCTTAGTGGGAATGGCCAAGGTACATGACACTGGCAGGCTCGGGGCAGGCTGCGTGTTTTACTTGACAAAGGAAGTGA-----CTCCAGTTTCAACTAGAAAGAAGAAGGAAATAGTCCTACAAAGGAAACATCGTTGTAAGGACGCAAGTTTA
s HiC_scaffold_1 107369080 1624 - 233722169 CCTCTGAAATTGCTCCTGGCTCTTAACCCAAGAACCAAAAACACTCAAAGAATCTGATTCTTACTGATCATCTCATTTGCATGAAGCTGTTTTATTTCTAGGTT--TTTGCAT-TAAACTCATTAGT-GGCAAAACAGTTTAGAAACACAG--agcaaataaataatacagtCACTATTTTAATA--AGAGTTCAGTGAGGCTCAGGAAAACTAGGCAACTTTATCCAAG---------CTGAATGTAAATGTTTCCAGCAATCAAACTTGGCTCTTCTGATTTCAAATCCTTGTGTTCTTTCACCAAGTTTTCTGAACTTCAAAAACTAATCTGA-TTAGAGCTATACTATACATTGGATTGCcacatacaaataataaaaatacaagtaactagttaaatttgaatttca------ggtaAACAAT-------------------GAGTAGTTTTGGAATATATGGC--ATCTTTACCtggcaattttaaaaatgggaatacTAAGAGTAGATTCCCTAGGT--AATCTTTAGCCTATGA--AGAGATTTTTGTCATAAGACAACCCTCCAAACTATACTTACTCAACACACATATAATCACTAGCCCACATGTGTGCCTTTGTTTTGAATTACCATCACAGGATAATATCATAGGGATATTCAGGTAACTCTACAAAACAGAGGGACAAAGGTACTGAAGAAGAcgagggatgtggctcagtgacagagctCTTGCTTTgcgtgcatgagg-------------ccctgggttggattcccagcacaaaaaaaaacagaaaagaaaaggtacTAAAGAAAGCAGCTAGCTGCATGAATGGTAAAGTTTCCATCCTTCACTTTTATTTACCAGCTCACAGTTTTGGTTTCAGTAAAGTGTTAAAAAGAAACACCAGTAATGCAGAATGCTGAATAGCAGGTTGGAACTATAGTACCTATTGTATATCCTAGGAAGCAGTAAGGAAAATTGACAAAGTTTTACAGATATTACAAGTGGAATGGTCTACAAATCAGCAGGAATTTTCt-acttctttcaaaaataaaccaactaTGTCCTAATGTAGAATCATATAATAATTAGTGAATAATTCCTTTATGGAGCGCACACAACTAGATACATGAAGGATC-CAACACCTGCCTTACATCC-TGGCTCTTTATCTTCCTGGAGGGTGTCTTCGATGAtcaattctctttcttttttatctataaCCGCTATGCACCAGCACAGTTTCTGTGCTAAGACCTCTTGGAGGTTTTTAAAAGGGAA----CTTGCCTGATTTAGATTCTTTCTCAATATCCTGATAACGGTGAACAAAATCTTCCACCTGCTCCTTGCAAAAGAGATCAGGCTCCACAAAACTGAGGAGAGAGTAGAGCTCTTGGAGGCTATTCTGTACAGGAGTTCCAGTCAACAGGAGACTGAAGACCACTGAGAactcaaatacataaataaacaaaagttaaaatcatG--GGAAGCAAGACTGT--TACCCATCCCAACCTTTATCCATACAAAAAGCAGTATGATTTAAT-GGAATGAGCAACGCACATGAAATCAAAAGGCTCAGGTCAA-------GTACAGCCTGATGTAGGAAGTAATATCTCTGTAGTTTCAACTC-CAAGAAGGGGGTAATAATCCTGTGAAG---ACACTGTTATAACAATGTGAgcata

a score=29464
s chr3            97596329 1892 + 160039680 cattaaactagctttctcgtctctctcttgccctttagccttatgagaatgcagcacaaagtccccaacaccttatatctggatct--gacttcccagccttcagaactgtaagataaataaacatctgttcgttctgacccggcctgtggtactgtgttgaagcagcacaaatggactaaCGTGGAAACCTATTGGGAAAGAGACACTGGTAAGGGTCCCTAAAACGAAGGCAATGGTACCAGAGAGCAAGAAGACCCCCAAGAGGGGCAGCAATC-----CTCACAGAATGTA------TCTGCTTTTGAACATTCAAAACTGCAACTTCTAGGCCAGGAACTGCAGGACGATGATCAAACATCT-------------CTCTGGAC----AGGATTTATTATGGGATGGG-ACCAAACTTCA----TCACCATCAAAA----CATGGA--GTCTCATAAATGAGCAAGCCTT--TCAACTAAGAGAAAGACAG---------TCCACCTTTCCC--------AGGCCAATCAT------CCCCGTGTTTC-------------CAGAATGGCACGAGAGGCCGAGAGACGA---TGAGAGCAAT-GCATCATACTT-----TATAACAATGA----CAGCAGAGGACAAAGGTGATACTCAACGGTATGGAACTGGTCTTTC----------TGTGGGCTATTAGATTCTTGGAACAGGTACAGTGGGAAAGAGCCACGACATGCCCACTGTATCTGCTAA-GTAAACAGAT---TTATAGTGA-GGTCATTTCTGCAAAGAAGCCAAGATAATCAAAGAGAGGTGAAATGCTTCCAAACGTACAATGCACTTTCCTGGCCTGGGGT----CATGTTTGATAACCGGATTTTAACAA-ACATTGCCTTACAAAA--GAT-----AAAAGGAAAGGCATTACATATTCTGTCTGCCCTGCTCACCCCCAAA-TGATCACTTAGCCCTGCTATAATCTGACTGAAAGAAAAA----GTTTCAATCAAGTCTCCACTGTTCAGGTCTAA-CTA-----TCTTTTACAAAGGCCTGACTTCGCAGCCCTCCTCCATCACCCTCCTGAGCCATTACACCATTACCGGCATGCACCTGGGTAACGGTCATTAGgggagggctgaggaagcagggccccagagtac-tgtcgggcagt----gacatcaccatgcatgatccctcaatggtaggt--agacatcattatatatttctcccgaccaagcagcatccacaatatcaaaagtgagtctgtgagctacag---attctgagggataatctcaaaactgttgcagcatctgcaacaaattcaccgctctg---------accggggatgtgggtaatgag--ggaagatatgaatggacggggtggagggcgtctctgcatctgctgctcaactttgttgtgaaactaaaaccactct-----------ttaaaag----atTATCTTAAACAGCAGCAGGCT-----------------ACCCTGTGAATTTACCTCTGAAAGTGTCCTGTGCAGCAGGGAGCTCTGGTTTTTCAATCTGTGAGCTTCATCCACAGCAAGAACGCTCCAAGAGAAGCTGTGAGAGAGAATCC--GCTTTCAGCTGTGTGCAACTCAGAC--CCATCTCACAAC----TGCT--ACAGAACTGCACCTACTGTTAGAAAGACTACCA-CAAGCCTGGCCCTGGAAACAC--ATCGG-------------------------AATCACCTCCCTACCGACTGGACGACAG------------------CTG------------------------------------------------CTGCACGAGGGGGTGC----------AGGC--------------------AAGGAGCTTCCCCCCAAGACAGAAAAGATG---GCGGGAAGGAAGGAGCCAAGGCCAGAGAG-AGAGAGAGAAAAGAGACATTTATA------ACCAAGTACTGAACTTGGAACTCTGTGTG---TTTAGTACAAAAGAACACAATGAACAGACATGACGGGGCCAatagggagatgaaggcttagaaaggttaggcaatttggtcaggctcactagggcagagcttagagtcaaacccaTTAAAACATTAAACAGATAGCTGTGCAACAGAAGACAAAAAAGCAGGATTTAAA
s HiC_scaffold_1 107374368 2078 - 233722169 CAGTGAGCtagttttctcttctctttcttaccCATTGTACTC-------------------TCGCCAAatgctggcaccttgatcttagacttccCAACATTCAGatctttcaga--aataaatttctgatgATTATA--TAAGTCTGTGGCAC-ATGTAAATGCTGCCAAAACAGACTAACATAACAACCCCTTAAGAAC-AGGCA-TATTAAAGACCACTAAAG----------AATTCCAGAGCGGAAGATGCCCTACCA-ATGGATAACAATCTAAGACTAATAGACAGTGACCATGTTTGCATTAAAACTCTAAAAACTGCAATTTTTAGGCCAGTA-CTACAGAATTTAGACCTGAGGTTTTCCTCCAAATGATCTCTAAATTTAAGTGATTTACTACAAAATGGGGAACACACTTCAAGTATCACCACAGAAATTAACATTGTTTGTTTCACAAAGGAACAAATCTTAACCAGATCAAGAAGGGACACAGTTTGCACTCCACCGTTCCTCagaaaataggacaaatataGCTAGCATCATATTTCTCTTCTAGTTTGCCAGAATGATCCAagagatcaaaagaaaagaatgagagcaGTTGGATCATACTCAAAAATATGACAATGATAAGCAAGAGAGATTAGATATAATATTCAATGGTATGAAATTGATCTCTTCATGATTCTATATGAACTGTCAG---CTTTAAACACATAAACTGGGGGAAGGGCATCATATGCCCAATATATCTGCTGTTATAAACAGATGAATTATAACAAAGGttatttttgtaaagaaatagagaaca-aaaaaacaactgagatatttccaaaaatatgaTGCATTTTATCTGAGTAAAGCATTACTCATTTGATAACCAGATTTTAGCAACACAGTCTCTTATAGAAAGGATGTACGAAAAGAGAAGTTGGGTCATATTAAATACTACCTGGTTACCCAAAAAATGTTCATTTGTCATTGCTGAAATCtgactgaaaaaaagaaactggttCAATTAAATTGATTCTGTACAAACCTAAactagtatttctttttaaa------------------------------------gaggagttagac--------------------------------agaggaagagataaaCAGATGGAACATAGAGGATGTTTAGGACAATAAAGGAAACTGCACTGTATGACACGAAAATGATGGATTTAGCCATCAC-----ATGTGTCCAAACCCA-CAGAATGCACAATACTGA--GTGAACCCCTAAACTACGGGGTATTCCAATG------TCCAGGGTAGGTTCATCAGCTGTAACAAATTTATCACTCTGGAGAGACACATTGAAAATGTAAAcagtaaaatgtaaaaagtaaacaGATAAGG-----GAACTCTCTGCACCTTC------ATTTTGTTGTGAACCGAAAACTGCTctaaaagtaaaatctaaaagCAAAATCTACTAAAAAGGGAGGAGTGTccataaaaactaaaatgaccATGGAAACTTACCTCTGAAAGTGTCTTATGCAGCAGAGAGCTTTGGTTTTTCAATCTGTGAGCTTCATCCACAACAAGAACACTCCAAGAGAAGCTGTGAAAGAAAATCCAAGCTTTCAGCTTTGTCTGACTCATCCAAACATCTCACAACCAAGTGTTAAACAAAACTACAACCTTTGTTAGAAAGACTAACAGTAAGCCCTCTTTTAGAAATACCTaccggggctagggatttagctcagtggcataagcacctgccttgcaagcaggcggttgtgagtttgatccccggtactgataaaaaggaaaaagacaaaaaaaagaaagaaagaaagaaatgcctacCTATCAGAGAGGATGCTGTGTACATAAGGCAACATCTGGAAAAGGTAGTAAAAGGAATTTTTCCTAAGGTGGGAAAGACatatacaaaaaggaaa-----agagccagacagaaggaaaagaaaacataactttCTACCACATGCCAGACACTGAGCTTACAGTTTTATATGTTATTTGGTCCAAAAGAATATGGCAAATAGACATAATTGTGCCACCATGGAGActataattcaaaaaaattaagtgacttgctcaaggtcCTAAAAGTAGAACTgaa---caaaatgacaagaaaaatcag-AGACAGTGATGTCATAGTAGCAAAAGATGTAGGTTTCAAA

a score=7489
s chr3            97601921 183 + 160039680 ATAAGACAAACTCGGGAGAGGGCAGAATTCCAAAGTGTGAAGGGAACACGTGACTTTCACGGCTCATGCGACAGGTCCTGGGGTGGCGCAATCTACTCACGATTTTAGAAATGAGGCATCTTTCAAGCAAATCTGAAAAAGTAAGGAAGACAAGTTAAAAAAAAAAAAAAAGGCTGGTGCTGA
s HiC_scaffold_1 107378508 171 - 233722169 ACAGAAGACAcacaaaagaaggcaggaaagaagCACGTGAAGGCAAGA--TGACTTCCATGACACAGTCTACAATTTCTGAAGTAGTACAACTTACTTACGATTTTAGAAATAATGCATCTTTCAAGCAaatctgaaaaattaaagaagacagaTTAAAAACA----------CTGGTACTGA

a score=13282
s chr3            97602691 457 + 160039680 GTGTCCCCCACTCCCGAGCTCCGGT--------TACC---AAACACGAGCCCCTCGCCAC-----------TTCTGTTCATCCGACAAGAGGCAGCTCAAGTGCTGCCTCC----GAAACCACTCCCCATGAAGCAGCAGGGATGGCAGAGAAGGAAACTAACCAACACAAAGCCCCACAATCCTTCACTTCTATAGTCGCAAAGTCTCTTTGTAAATGTGGTGAAGGGTCACTTCCCTCCCTCCAGACCCCCTAAAGATTGCTCTGTGTAAACAGAATCATAGTGGTTTTAACCGCATCTTTGG------------CCCGGGTAAGGAGGTCTTGG---AGAGAAGCAGAGGGCTACCTCGTATGTCGTCAGCAGCACGTGAAAACCTGACTCCTGTCTTAGGTCCTGCTGAAGGCGGGCTCTCTCCTCCTTGTCACCTGTGTATGTCACACAGGAAAGACCTGGAGCAAATCTGGAGCAAAGAAAAGAGGTGGACA
s HiC_scaffold_1 107378990 480 - 233722169 GCGTCCTCCACTCCTATCCTCCAGTAGATATGATGCCTCAATATACAAAACCCTttccatcctgcctgcctttctgttcATTAACCAAGAG-CAACTCAAGGACTGCCTCTCTGGGAAAGCTTCCCCCTTGAGCC--Taggca----agagaagaaaagaaacctaaCTGAAGCACAATGATCCTTCACTTtttt-ttgtcagtttgtcttcaagTATATAATGAAGACAGACT---CTCCTTTCAGA-------AAATGTATGCTATCAAAACAAGTTAAATATAATTTCAGTGGGATCTGAGAATTTATAAAGGTCCCAGGTTAGGAGTTCCTGCCACAGAGAAACAAATGAATACCTCATAAGTAGTCAGCAGCACATGAAAAGGAGAGTCCTCTGTTAAGTCTTGCTGAAGGTGGGCCCTTTCCTCCTTGTCACCTGCATATGTTACACAGGAAAGACCTGGAGCACATCTGAATCCAAGAAAAGAGAGAGGCA

a score=20640
s chr3            97603240 580 + 160039680 TACCCAGGGAGAGTCCTAGGGCTTCCAAACCATGCCTAGGGTCATGGCTAAACCTCAGGCAAGGCCCTAATGTAATGTTTAGGCATTAGAGTTACGTCTAAGGG--CATTGTGTTGGCTTTTAAAAGGAAACCTTTTTCACATCAATCATTCCCTACATCAATAT---GAAAAGGAGGG--CCTTTCTTCA---GGGCAATAAACTTCATTAAAAATGAATACTGACCTTTAAGTTGCCAAACACAAGTGATAA----GACCGGGACCCTCCTATCCTGGATCCCCAGTGTCTACCTACCTTGCTTCAGTTCGGATCTTTCTAGAA---TAAACTTTTTAACTGTATAAGACACTATTATTTT---ATCACATTTTTTACGCCAGCCAGAC---TATCTTAAGCAAGGCAAAGAATAAAAGTTCATCTGATTC--ACTCCGTACCTCTCCATCTCTTCTTTCCAGTTGCTCAAAACAGACAAGGGACAGAGAACCAGAAACGGCCCTTCATCATTCAGTCTCCCCACCAAGTAAATGAGGAGAGCGATAGTCTAGAACAAAAGAGAAAATCAGTTCTGATCACATTTCTCACTGGAACACGTGCA
s HiC_scaffold_1 107379910 587 - 233722169 TACCCAGAAAAAGTCCTGAGGCTTT-AAACCTTACCTATAGGAATGGTTAAACTTTGGGG-------TAAAGTCCTGTATAAGAA---GGGCCAAGTCTAAGAGGCTCTTGTGCTGgctctaaaaataaaactatttttatccaTGTTATTTCCTATgccattacaaagaaaaaaatggttcCTTTCTCCATTAGttcagcaaaatt--tttaaaataagcactgATTTTTGAACTGCCAGGTAACAACAATAACATCAACTGGTTCCTCCCTCTATCAGATCCTCAGAGCCTACTTACACTGCTTCAGTTCAGAGCTTTCTGAAACACTAAACTC----ACTGATTACGGCAAAGTGactttttaatcatattttatacaccatctagaaaaatattttagccaacATAAACATTCAAGTTTCAGCCAAATCTACTTCTGTACCTTTGCATCTCTTCTTTCCAGTTGCTCAAAACAGACAAGGGACAAAGAATCAGAAATGGTCCTTCATCGTTCAGTCTTCCTGCCAAGTAAATGAAGAGAGCAATAGTCTGGAACACAGAAGAAGG-CAGTTTTGATCAGATTTCCCCATGAGAAACAAGCA

a score=14785
s chr3            97604695 576 + 160039680 ggtcttttgacaagctacaacaATA-CCACAGGAAACACTGCTAAGGAAGTCATAATCAACTTGATGCTAAGACAGGTAAATTATTTTTTTATAGAGAAAATTCCTGGACCAGGATCATTGGCTGC---TCTAATTAAGGCATGACTTCTCCCAAACACGTTAAAAAAAAACAAAAAAAACAAAACAAAAACAATGCCCCCTCAAAAAACAAAAACAACAGATCAAACAAGGGCAATGGTACAATTTTAAAAACTCAAACTAGAGAACACAGCTCTGAGATGAGACTCCTTTAACATGCTAC---TTTATGTATTTTATACCCTCGTAAGAAACACACTACTGCAGTGAGCACACAGCGACAACAGTGCGCTGTGTGGAGGTA-------------AGCTGTGCTCATTCCACAGCAG-ATACCTGGCAGGTCTTCCCCAAGCCCATCTCATCTCCCAGGATGCAGCCATTCTGGCAATGGAAGCACTGGACTAGCCAATTGACTCCTTCCAGTTGGTAAGAACGTAGACGAATCCCTGGAAATAAAAAA-ACAGAAGCGGTCTGAAGAACAGAAATTCCAGCAAAC------GTCAGGTTCTA
s HiC_scaffold_1 107388253 531 - 233722169 GGTATTATTATAAGCAATCCCATTAACTATGTAAAGTTTTGCTATGGACATCAGGATCAACTTGATTCCTGGGAAGGAATATTCGCTTTACATAGAGAAAAGTATTGTGCCTGAGCCATTAAATGCACTTTTAACCCATAAATGTCTTCTCACAGATAC-----------------------------------------------------------CAGATAAGACAAGGGTAGTGACACAACCATCCCCAC---AACTATAAAAATCAACTCCAAGGT--------TTTGACATCTTAAATGTTTACATATTTCACAACCTACTATAAAATTACATATCGCAGCTACCAGCTAAAGATGGTAATGAGTTGTGAGGAAGTACATCAGGGCAGGGAACAGTGCACAGTCCATAGTAACATACCTGGCAGGTCTTACCCAGGCCCATCTCATCTCCCAGGATGCAACCATTCTGACAGTGGAAGCGCTGGGCTAGCCAATTGACTCCCTCCAGTTGATAAGGGCGTAAATgaattcctagaaatggaaaatacagcaaatac---aaaagcaaacattttagCATATAGATAGGTCAAGTTTTA

a score=7537
s chr3            97609869 332 + 160039680 GCAGCGCAACTTTGAGAGTTCATTAGGGAGCCGCAACAAGTGAGTGCGCATGCCCAGTCGGCAGGGAAACGCAGACTGGGAGGAGCGAGAGCGG---CCGGGAAGCTGCTGGCTCC------CCCGCTGTCCCCGCG-----------------TAGGCCAG-------CGCTGCCGCGCGCCTTCCCGG--CTcccgcccgcc----------------------cccgggcg-tccccggcccgcTCACCAGTCAAGCCCCACTGCTGTAAGTCCGGTTCCTGCACCCGCGTCCGAAGCGGCTCCGGCCCGTGTTCGGCCGGCAGCGCCTGCAGGAAGCGCGGCAAGCCGCTCGCCATC-----CCGAGAGGCCCCGCGCCTTCGCTCCCGCG
s HiC_scaffold_1 107397916 390 - 233722169 GCAATGCGATTTTCAGAGG-CGCCCGGAAGCAGCTAAGACCGCGTGGCCGGTCGCAGACGACCGGGACGCACAGTC---GAAATGCGGGCGCCGTCTCCGCAAAGACTGCGACTTCTCACTTCCCACGGTCCCCGCCGCCGACCCGCCGATCCCCAGGCCCGGCCCCGCCTCAGTCTCGCGGCGGCCCGGAACTCCCCCCCGCCGGCGCCCCAACCGGGTCAGCGCTCCGGGCGGTCCCCGAGCCACTCACCCGTCAGGCCCCACTGTCGTAACTCCTGCTCCTGCACCCGCGACCGAACCGCCTCGGGTCTGCCCCGAGCCTGGAGGGCCAGCAAGAAGCCGGGCACGTCGCCATCCATCGGGCTGCGACAGGCTCCGC-CCCGGGCCCCCGCG

a score=16512
s chr3            97616398 711 + 160039680 AACAGCACATACTACATTAAAACCTCG----GTCACTTCCGAGAAT--CTACCCTCTTT----------AGTAAGGGCACTGCCCTGTAATGCCATCAAGTAAATGTTTGAGGGCATAGCCTGGATGTTGTAGGCAGCTCTGAACTGAGACCTACTCTTGGGACTTTGATTTGCCTGGC---------TTCTTTTTTCCCTTAATG------CCTTTGACTGTCATTCCTTGCCATCAAACTAGTTCTTTGCAGTTTCACGCTGTCTGTTCTTTGTTGAGCAGTGGACGGTCTGTGCGGCCCAATTTACTAGCCACTGAAAAGTCTGAGTTTATTGACTTTGGAACTTAGCTTTTCAAGCGTAT--------------------TTCCTCATAAAT---AGCAGGTTATCT----AAATAAGGTCCCACAAAGGCAAAATGGTTCCCA------------------AATGTCCTTGGGCACTTT----TCTCTAACCAAGACCACAACC-CTAAGGATTCTTCCAGCCTTCTTTTTCCT--AATCAGCAGGAACCCCGAGATGTCCTATGCCTTTACTCCATAGAGCCTGAGTCTTAGGTTTGAAAA-TGAACACACCTGGTTCATATGTGCTTACATTCCTAAGACACAACTAGAATGTGGAGTTCAGGGATG---------GCCCCAG------CCTCCGCCCCCAACTTTCCAGAAATACTGTGTACAATAATCTTTATAATCAGGCAGTTTCAGTAATTAGAAAAGGCTTC-AAAAAGCCCAGGTGACATAGTCATTT-AAATGAGAA
s HiC_scaffold_1 107422750 803 - 233722169 AGCAACAAATCCTTCACGGGAGCCTTGTCTGGTTACTTCAGAGAATTGCTATACTCCTCTAATATCAAAGGTAAGGACACAACCCTGGAGCATTAACAGGTAA-TCTTTGAGAGCAAAGTTCAGAGATTGTGCACAGCTCTGCCCTGAAATGTGCTTAT----CATTGTTTTGGTTGGCATGATAATGTTCGTTTTTCCTCTAATTGAATGCCTTTTGACTGT-ATGGATTGCCATCAAATTAATCCCATGCTCTCTGACTCT-TCTGTTCTC-ATCCAGCAGTAAAACATTTATGCAGTCTACCTAGTTAGTCCCCAAAACTTCTGAGTTTTCAAACTCTAGAATTTACCTTTTCTAATATATGTACCTTTTCTAATTTACCTTTTCTAATATATCTAAGGGTGTTATCTTAACAAATTAAATCAGATGGAACCAAAATGGTTCTCATGATCCACCTTACACTTAAACATATTTTGACAGTGTGATATCACTACCAAAGACTACAATCGCCAAAACTCCCCTCAACTTTCCTCCTCCTTTGATCGCTAAGAACCCAAAGCCATCTTGTGCCCTAACCCCACACAGCCTGAGTCTTAGGCTTGAAAAGTAAACACAGATGTTGCCTATGTAACTGTGCTCCTGAGGCACAGTTGTAATATTAATATAAGAGTTGTAATATTAAGCCAAAGGAGTTCCCCACACCCTGAAACTGCTAAAATTGCCCTATGCAATAATCTTCATAATCAAG-GGTTTTAACAATCAGAGGCTGCTTCTGAAAAGCTCTTGGCACACAGTAATTTGAAATGAGGA

a score=13371
s chr3            97628984 255 + 160039680 GTGTGTTCACTCTCTCATGTCTTTCTTTCTTTAGGACAAGTGACGCAGACCCAACCAGA-GAAGCACTCTGGTGACCATGGCCAAAAAAAGGATTGCTGTAATTGGAGCAGGAGCTAGCGGGCTCACCTGCATCAAGTGCTGCCTGGAAGAGGGCTTGGAACCTGTCTGCTTTGAAAGGTCTGGTGACATCGGAGGACTGTGGAGATTCCAGGTAAATCTTCTGAGCCCCTAAGACTTGAAGGACTTGCAACACCC
s HiC_scaffold_1 107428324 252 - 233722169 GTGTGCTCTCTGTCTTTTGCCATTCTTT---TAAGATAAGTGATCCAGAGCTAACCAGGTGAAGATCTCTGGAGACCATGACCAAGAAAAGGATTGCGGTAATTGGGGGAGGAGTGAGCGGTCTCTCCTCTATCAAATGCTGCCTGGAGGAAGGCCTGGAGCCTGTCTGCTTTGAAAGGAGTGCTGATATCGGAGGGCTCTGGAGATTCCAGGTAAGTCTCCTG-TCCCTCAATACTAGGAGCCTTTTCAGGAACC

a score=72743
s chr3            97635401 3729 + 160039680 [encoded data, 4257 characters]
s HiC_scaffold_1 107431158 3955 - 233722169 [encoded data, 4257 characters]

a score=20033
s chr3            97641451 524 + 160039680 GTAGCAGGAGATCACAGCAAGATGTATCCATGGCCAGTGCACGCACCAGCTTAGCTGTAGG---AGTGTATAGGAAGGAAAGAGCAAGGTGTTTTGCCTACAGGGCTATATGGGACTAGAACACTAG-----TGAGTTTGAACTTAACCTTCAGGAGAATGGGACTGCTTTTGAAGGACTG---TGAGCCAGAGTGATCAAAACAAGCCCTGTTTTCCATGCCCCAGGTATTCCTCAGTACCAGGAGAGGAGCTTGGATCTTGAACCGTGTAGGCAAGCATGGATATCCTATTGACCTGCTACTCTCTTCTCGGATTATGTACTACTTGTCACGTATCTGTGGTCCATCACTAAAAAACAACTATATGGAAAAACAGATGAACCAAAGGTTTGATCATGAAATGTTTGGCCTGAAACCTAAACACAGGTACGTTTCCAGGATGGGAGTGTGGGGGGGGGGGGGGGGGGAGATGGTCAAGGTCCAAAGACAAGGGCGACTGACATGGGCTCATAGTAGCCCTGCCTTTACCCAGGC
s HiC_scaffold_1 107437771 521 - 233722169 GCAGTGGTGGATCACAGCACAATATATTCTTGAACAATGAGTATACCAATTTAATCATAAGTTTAATATTAAGAAAGGAAagtttcagttatttaaaa-aaaagattgtacAGGATTAGAAAGCCAGACAATTGAATTTGAGCTTAATCTTAAAGAAAGTGGGGGTGATTTTGAAGTACTACTATAAGCCAAAGTCACAAAAGCAAACAATGTTTCCC-TGCCCCAGGTATTTCTGAGTACCAGGAGAGGATCTTGGATTCTGAATCGTGTAGGAAAACACGGATATCCCACTGATGTGTTGCTGTCTTCTCGGTTTACATATTTTTTGTCAAAAATACTTGGCCAATCATTATCAAATGCATATgtggaaaaacaaatgaatgaaagatttgACCATGAGATGTTTGGCCTGAAGCCTAAACACAGGTATGCTCTCAGGACAAGAGT------------GGGGTTGTTAATACCAAAAACACAAGAATAAGGACTGTTAACACAGGTTAATAGTGCAATTATCTCTATTTATGC

a score=38660
s chr3            97645101 827 + 160039680 agaaaagctatctacatatagactatagattgctctacaTACATGATTTGTT-TATGGTTTGGAAAATGATGATTTAAGTCTATGTCTTGGGCCT-TTGGAACTGGGAATGGCACTGACCATAA--TGTTCATGGTCTATTTCTGCC--ACTTCTTGAGAGTTGTCTGAAAACTGTTGGTCAGTATCCTGGCCATGCCTTAGAACATTGCTA--TTAGAAACCACTTATACACTCCCC-AGATAAAATTCTTTGCCTTTCATTCCTTCAATTCCCTCCCTTTCCACGCTATCCAG--TCCTGACA--TCCTGATCTATGCCAAGCTAGTATAAGGTGGACCTTCTGTCACCCCCTTGGCAAGAGAGAAGGGTGAGCGGGTGTGCCTCTGCCCACCAGAGCCGA----TGCTTACATG---CTGATTCCTTTCTC-----CCCTCCTCCTT-----CATGCTCACCTTACCTCTTTGTCCCCCTTACC--CATCTACAGGGCTCTGAGTCAGCATCCAACAGTGAATGATGACCTGCCCAATCGTATCATTGCTGGCTTGGTGAAGGTGAAAGGAAATGTGAAGGAATTCACAGAGACAGCCGCCGTATTTGAGGATGGCTCCAGGGAGGATGGCATTGATGTGGTCATCTTTGCCACAGGCTACAGCTTTGCCTTTCCTTTTCTTGAGGACTCTGTCAAAGTAGTAAAAAACAAGGTGTCCTTGTACAAAAAGGTCTTTCCACCTAACCTGGAAAAACCAACACTTGCAATCATCGGCTTAATTCAGCCCTTGGGAGCCATTATGCCCATTTCAGAGCTCCAAGGACGCTGGGCCACTCAAGTGTTCAAAGGTAAGTGA
s HiC_scaffold_1 107440236 840 - 233722169 agaaaaaataatt---tttaaactataaattgcTCTACATATGTAGTTTATCACACAGCTTGGGAAATGATGGTCTAAGCCTACCTCTTGGGCCTGTTAGAACTGGAAAtgggactgaaaaaaaaatgttgata------ttCTGCCTGACTTCTTGATATATGGATAGAAACTATTGGCATATGACCTTATCTTACCAAAGAATATTATTAATTGGGAAGCCACATATTCACTCCCTTAAATAAGAC------CCTTCTATTTCTCCAAGATTCTCCCTTTGAATGCCACCCAGAATCCAAACTATCCCTGATCTGTGGCATGCTGGTACAAAACAGACCTTTC--CAAAATTTTATAGATAGATGAGGGCATACTGTT-TAACCATTTCCACCAAAGCAGAATTTTACTTACATGAtactaatttctttctctctgtccatCTTTCTTTTGgtccttctcatttttcttctct-tcatttttatcaTCACTCACAGAGCAATGAGCCAGCACCCAACAGTAAATGATGACCTACCAAATCGTATAATAGCTGGCATGGTGAAGGTGAAAGGAAACGTGAAAGAGTTCACAGAGACAGCTGCCATATTTGAGGATGGCTCCAGGGAAGATGACATTGATGCTGTTATCTTTGCCACGGGCTATAGTTTTGACTTTCCTTTTCTGGAAGATTCTGTCAAAGTTGTGAAAAACAAAGTATCACTGTATAAAAAGGTCTTCCCCCCTAACCTGGAAAGACCAACTCTTGCAATCATAGGCTTAATTCAGCCCTTGGGAGCCATTATGCCCATTTCAGAGCTCCAAGGACGCTGGGCTGTTCAAGTATTTAAAGGTAAGTGA

a score=5766
s chr3            97649977 242 + 160039680 TTCCTTATCCGAAATGCTTAGGTCCAGACATATTCTGGATTTCA---------GATTTTGGACAATTTGCATCTGTGTAACAGGTTATCTCTGGGCTGAGACCCAAGTCTAAACATGAAATTAATTGCTTTTTCCTATATACCTT-TATGCATA--------GCTATTTTATGGGACTTTATACTGCTGTGCCTGT-CTTTGAGTGTGACCTGATACTTGAGATCA-CTGTGGCACATTTTTTTACTAATAACATCTTCTtg
s HiC_scaffold_1 112013999 252 - 233722169 TCCCTTATTTGAAATTTTTGGACCCAGAAGTGTttcaaatttcattgtttttggatTCTAGAATATTTGTAAC---ATAATGGGATATCTTCAAGATGAGACCCAAGACTAAATACGAAATTCATTGATGTTTTATATACACCTTATATACACATTCTGAAGGTgattttatgcaatatttt--ttatgtacTTATATTTTGCTTGTGAAGTCATA--TAAGATCAGTTGTGGAA---TTTTCCACATATGGTGTCATGTTG

a score=12125
s chr3            97650399 411 + 160039680 ATCTTCTTAGTACTCAAAAGAAATTTCAATTTGGGAGCATCTCTAATTTCTGCTTTCCAAATTTAGGGTATTCAATGTTTATCATCACATTTTGGCAGTGACAGGACCAA---ATGCATTGTATAGTTTCTCCCGAG-----------GCCCTGTGGCTCTTTGAATTCTCCGCAGTGTGGTGACTGCCATTAGGATTGA---TGCTCATTCTGAAGTAATTAAAGCTTCT-TCTGTAATTTTTTCTCTTTAGGGCTAAAGAAATTGCCCTCACAAAGTGAAATGATGGCAGAAATAAATAAGGCTCGAGAGGAAATGGCAAAAAGGTAAGAAATGCTCCCAGAGG-----------------ACATAAGGACAC------------------------TGTATTCTTCAGTAAGGAACACATTGTGCTATACTTAGTTTCCATGTGTGGGCTTAAGGATTTCTGTTACA
s HiC_scaffold_1 107443099 464 - 233722169 ATCTTGTCAAAGCTCA---GACTTTTGGATTTTGCAGCATTTCAGATTTCTGATTTTTAGATTAGGGATGTTCATCTTGTATCATTATATTTTGGTGTTGGTAGGATAAAGTAATGAAGTGAAT--TACAATCTGAGTACAGAAAATTATCCTGTACTTCATTGAATTCTCCATACCATAATTAATGTTAT-AGGATTATAATTGTTTCTACTAAGTTAGTTTACactgaaatgtttaattttttccctttaggaCTAAAGACATTGCCCTCACAAAGTGAAATGATGGCAGAAATAACTAAAGCTCAGGAGGAAATAGCAAAAAGGTAAGAAATTCCCTTGgagatatatatatctatatatacatatagatatatagaaatatagataTTTTGACTATTTACATCTTAATAAGAGCAATATTGTACTACATTTTGTTCTCTCTTGAGACTTTAAGGATTTagattata

a score=23613
s chr3            97651328 620 + 160039680 TAAGGAAGGTGATAAATGTCCTA------------ACTCTTCACAGTCCTTAGCATGATAGCAAACCCCCAGATAGACACTCACAAAGCACCGACTGGCTGATTGGTTGCCTTGCTGTTTGCGTGAATTGCTGATAGCCTGGGACTTCTGTCTTCTTTGCTTTAGGTATGTGGACAGCCAGCGTCATACCATCCAGGGAGACTATATAGACACCATGGAAGAGATTGCAGATTTAGTGGGTGTCAGGCCCAATATCCTGCCTCTGGTCTTCACTGACCCCAGGCTGGCATTACGGTTACTACTGGGGCCCTGTACTCCAGTCCAGTATCGCCTACAGGGCCCTGGAAAGTGGGCTGGAGCCCGGAAAACTATTCTCACCACGGAAGATCGTGTTCGGAAGCCTCTGATGACAAGAGTGGTGGAAAGAGACAGCTCTGGGGGGTCACTGGTGACAGTGCGTGTCCTCATGCTGGCTGTTGCTTTCTTTGCTGTCATCCTGGCTTATTTTTAGATGTGGCAGCG-CAGTACTTGAGCTGCCACCGGAAAACGCCATCTAGCCACACCTTCAGAACCTGATGAGACTGAACA-----CAGCTTCATACTGCACAGGA-------ATCAATCACAatctctctctctct
s HiC_scaffold_1 107447695 627 - 233722169 TAAGGATGGTGACAA-TGTCTTATCTTTCTTCACCACTTTTCACAATGCCTAGCCCAGTATCAAGCGAATAG-TAGGCATTCAGAAAGTATTGATTGA-----TGGATGACTAGTTGATTG-----AATGTTGTAAGTCATGG-CTTTTATCTTCTTC-----AGGTATGTGGACAGCCAACGCCATACTATACAGGGAGACTACATACAGACAATGGAAGAGATTGCTGAGTTTGTGGGTGTCAAGCCCAATCTACTGTCTCTGGCCTTCACTgatcccaagctggccttaaagtTATTCTTTGGACCCTGTACTCCAATCCACTATCGCCTACAGGGCCCTGGAAAGTGGCATGGAGCTCGGAAGGCTATCTTAACCACATATGATCGTATCAGGAAGCCTCTGAATAcaagagaaactgaaaagagCAATTCCATGGTTTCAGCAGTAACAACTGGCTGTTTCATGCTAgctgttgttttctttgccatAATTATGGCTTATGCTTAGATATCCCATTGTCAATGCCCTGAATTTCAGTGGGAAGCTTGATCTAGAGATGCCTTTAGAACTTGAAAAAATTCAGTAACTCTCACTGTCATATTGCCCcaaattcttttatctttcaaaagcttttttttcct

a score=28074
s chr3            97658065 1080 + 160039680 CGGCCCCGCCCCAAGC--CGGAG-CTGCGCACGCACCCACCACAGAGGCGGTG---CTGGTGGCTAGAGAGGCAGGCGACCCAGGCTGAGGAGGGGGCGGGGCTGGAGCGCAGGGGGCGGAACAAGAGGCTCGGTGGGCGGGGCCAGAGGCAGAGGCGGTACCTCGTCGCGGGCCTTGTAGCCATTTTAGGAGGAAACCCGGTTCGCTGGTTTGGGGCGCGGCTTCAATTTCAATAACTTTATT-GGTCTCCTTGTACGCCGAACAGCCGGCGTGCGTGTAGCCACGCGAGCCCGGAGCGCATCGCCCGAGGTGAGC--------GGCGTGGGG------------GGTGTGCGGG------ACCGGGGCTGTGGGGCAGCGAGGGCTCCCGGAGCCGGTTCTCCGAGCCGAGGCGTCCGTGAAGCGGGTAAGGGAGGGGACCCCGGGCGCGGTCCCCTGCGGCGGGGATTCCCTTc------ccgggcgcaggggcggggccggggcgccccTGACGCAGCCGCGGGGGTGTTCCCCGCCTGGTGTCATTCCCCGCGGCAGGTTGCCCCCGACTCGAGCTGCAGCCATGGGAAACACTACCAGCGAGCGGGTGTCCGGGGAGCGCCACGGAGCCAAAGCTGCTCGAGCTGAGGG---CGGCGGCCATGGCCCGGGAAAGGAGCACAAGATCATGGTGGGGAGCACGGACGACCCCAGCGTCTTCAGCCTGCCCGACTCCAAGGT------------------------GAGGTAGCGGGGCTGCCGGCAGCTCCGCCCTTCTTGGTTCTTCCTCCTCATTCTCAAGGGTTATGGGCTTTTTAACTAGA-------AGGCTATTCCGCGGATAGA-GATGCTGGGTGCT-AATTCCTCCTA-GATACTACCTCAAATTAGGATAGGGGCGCGGAG---TTGTTTTCCTGCTGCTCAGAGTAATCTGTGGGCCAACCTTTTAGGACGAGTACCAAAAACCCATCCCCTGCCAGCCCCATCCTTGGATCTACGTGCAGGTTGCCCTCTTCCAGAGCTTGCAGGATGTATAGGTTGTGAGCGCGGGT-GGAAACTTCGGAGGGTGCGTTGTCTGAGCTATTGAAAAGGGC---TCAGTTTCTCACATTGGCCTCAAGATAGCTAGA
s HiC_scaffold_1 107452847 1049 - 233722169 CGGCGCCTGCCCGAGCGCCGGAGGCTGCGCGCGC--TCACCACCGAGGCGGCGGCCACGGAGGCTAGAGAGGCGGGAGGGCC-------------------GCAGTAGCGC-----------------GCGCGCTGGGCGGACCCCG-----------------CGTC-CAGGCCTTAT--CCATTTTAGGAGGAAACCCAGATCACCGGCTGAGGGCGCCGCTTCAATTTCAATAACTTTATTTAGTGGCCGTGTTTA--GATCAGCCATCGAGCCCGCGGCGCAGGGAGCAGGCAGCGCTCCGTCGGACGTGAGCAGGACGCGGGCGGGGGGTACCGGGCTTCCGGAGCGCGGGTTTCCCGCGGGGGTTGAGGTACCGCGGGGGCTCGCGGG--CGACCCTGCAGGCCAGGT------------------GGGACTGGACCTGGGCCCGGGCTTCCTGGGGCGGGGGATTCCTCCGGGTCCCCAGGCGTAGGGGCGGAGCCGAGGCGTCCCTGACGCAGCCG---GAGTGTTCCTCGC-----------------GGCAGGTGGCTCTAGGCTCCCCCCGCAGCCATGGGAAACACCACCAGCGACCGGGTGTCCGGGGAGCGCCACGGCGCCAAGGCTGCGCGCTCCGAGGGTGCCGGCAGCCATGCCCCGGGCAAGGAGCACAAGATCATGGTGGGGAGTACCGACGACCCCAGTGTCTTCAGCCTGCCGGACTCCAAGGTAGGCGCCCCCGTCAACCCTAGTCCGCGGTGGCGGTG----CAGCGGCGCCTGGCGTCCT-GCTCCGCCTCCCTACCC----GGGATCTGTTTCTTTGCGCTAAACTGGGTTAGGATTTCCCAGGGATGGATGCGGTTGGATGATAAATTATTCATGTGGTACTGCCTCAAAATACGACAGAGAAGAAATATTCTTGTTTTCCTGGAGTTCTGACCAACCTTTAAATTACATCTTTAGT-TTAGTACAGGGAGAGTAGATACCACC-GCCACATCCTAGGTTCTCCTAG--GGGTCCTCTTCTACAGGG-TAGCTCAATTTGTAGGTTGTAACCCTGGGTAGAAAACTTGTGAAGCTAGATTGTTTGAGCAGCCGACTCTACCTCGTCAGTTTCTCACATTTGCCTTGAGGCAGCTAAA

a score=49879
s chr3            97659150 2196 + 160039680 TCTCCCTGAAAATGTCTCTGTGTAGGTCTCCTTCTTGCTCTCTCTTACGTGTTCTGCATCACCTCTTCGATCCTCGTCCACCTTTGTATGGCTCTGAGCTGCCATCAGTTGATTACTTGAATACTTTCCCCTAGTCTTGGGGATCCATATAGGACATCATTTGGTTAATGGCTCAGATCTTTTTTTGAAACGTGCCGTTTTA--AAATGTAGCTGTG-----------AGCT-----TTGCACAGGAGAGCAAGTCACT-----TTACTTCACTCCTCAGAAGTACTTCAAAACGTTGCCCGGGGCTCAAAACCACCCTCTAC-----TGACCTGAAGCCTTAGCTCTCAATTCCATAGACTTGGAGCCAGAGGCCACTTTTGGTCACTCAAAAGAAGAGCCAGATGGAGCTGACAGCAGTGTGATTGCTACCCTAATGTTCCTAATCA--CTTAGAAATGTCAGCATTAAATACATGTAATTTCTCCCGGTAGACTT-TCTGGAGTGAAAAAGAAAACCCGGCCCTTGGGGATGGGGTGGGGTGGTGG----------ACATTT-ATCACTT-CCCAGTGAACTGAGGCTTAGGATAACA----GAGTTTTATTTGCCACTTTGATGGCACATGAAATTTGAATTACACACCTTATTTTCTCCGATCGAGATTGAGAACGCCGTTAGAAAAGTG--------CGTCATTGAACCGGCCATTTCTTGGGGTTCCCTCTTCCCTGTTTCCTCTCCTCT---------AGGATTCCTCCTCATTTGGGCCCTGGACTCAGCC--TAGATTTCCTTCTCCAAAGCTTATCTAGGATGACAGGCAGGCCGTGTATTTTTGCTCATT-CCTACATTGATGACTCAGGATTTGGGTACAGT--------CAAACTGTGACTGCAGTAATTGGTGTCCTGAATAAGAGCCAGGCTGCTCTGTGTGGATTTAGGCCTGTTCTAGAACATTCTTTCCCTCA-----TATCTTGCCCTTTGTGAAATGAAAAAAGTAGTTCAAACAATTACCCATGTCTTAT-CAGATTGAAAACTTTATAGTTC---ATGCCCTCCCCTCCACACACACACACACACTGAATTTCCTTAAACATTTGCAGGCTGTACTTTGAAT-GCTGCTTTGCTGCTGTTCGTGGTGATTTCGCTGATGGTTTAACT-GGAGCAAACAGTTTTTCTGCAAGTCAGCAGCAGTCATTCCTACCACAGAAATGTCATGTCATAAGTGGAAGGGCTTTGCTCCAAAGCCAGGCATATTAATAGTTTAGAGCTTTCAAATCCTAAACTGAAAATCCTTAAGTCAT-AAACGTAATTGATAGGAA-----CGGTGGGGCTGGGGGCATCTTTGCTTCAAAGGTCAG--GGTTATCAATAGTCTTAGTCAGTGCTTCTCAGCCCTGTTTGTATGACAGGATCCCCCAAGAATGCTTTAAAAACCTTACGAGAAATCTGACACACTTATAAAAT------GAACTGTGTAATGAACTGTGTGTA--TGTCACCCTGTTTATACGGTGCTGGAAGGTCATG---AAAGACTTCCTCTGGGATCCAAGCCTCTCCTCTACCAGCCA----CTCTGAAACAGATTTCAAACAGGTCAACAAATAGTATTTCTAACATTTTAGGACATTCCTCAAAGGTGACCGTTTAAAGCTGATATGatagcggctcacacctgtgatttcagctgtttcagaggcagag-gcaggaaaaac-cttgccaggCTGGACTGGA-----GTGAAAATTTGACCCCTAGAGAACGATAAAATATGTTTT----TCCTTGTTTATTGTAATGTGATAAGAGTGTTGTTATCTGAAGGCTTTAAAAATATATATTCCCAAAATCCTATG-AGGACTCAGAGACTCTGAGGGTTGTTTTGAGCCATATGT--AAGCACTCCCAGTGCAACT-GTCAGCCCCAGGGCATTGCTTTGAGGTTCCAGAGACCACCGTTTTGTCTTAATCCAGTCCCCTGAATAATGTAAAAGTCCCTTCCCTTTTCTTTC-ACACTTGCTTTGGTCTATATTTGTACT----------GTAGTCATAAGGACTATCGAGAAACAG-ATCGAAGGTAAACTTTTTTCATTTTGGAAAGAACAGGGGAAATCCCAAATAAATAAGCTAGACTTTTCTTACTCTAGCCCTCA------------------------------TCATTTCATTTGTA--------------------------------------------ATGCC---------------------------------------------------TGACTTGGTACCATGCAGTCT--------------TATTTACCAGTCAGTGAAGCCATCCCAAAGGACggattagcaaactttttctgtaaaaggccaaataatagataattgagagtctgtg
s HiC_scaffold_1 107454492 2327 - 233722169 tttttctgaaaatgtcTATGTAT-----------TTGTACTGTTCCAGGAGCTCTGCA------CTTTTGTCCCCCTTGCCCTTTGACCTACAGTGAGCAGCCACCACTtgcttatttgaatatttttccttaGTCTTGAGCATCAGTAAAAGTCACCATTTGGTTGACAGCTCAGTTTTCATCCCATACTTTGTAGTTGTGGTAGCTGAGGCTGTGCTTTCACTCCCAGCTGCTCCTTCAGTAGGTGAGCTGGTCACTCCAGATTTCTCCACCCCTGTTTAGGACTTCAAAATGTTGTTTGAGGCTGAAAATGACAACCCACAACTGTGTTTTGTAGAGT--GATTTCAATTCCAGCAACTTTCAGGAACAGGAAATTTTTGTTTACCCCTATAGAAAACCAG-TGGAGCTGACAGCAATGTGATTACCATTGTAGCATTTGTAATCAGTTTTAGAAATGTCAACATTAAATACATTTAATTGCTTCAAGGAGCCTTATCTAGAATGGAATGGGaaaa-------tggagggagggaggaggttgGGGTTGAGTTTTTATATTTCATCATTTTCCCACTGAACTGGGGGTTCAGAGAATAAATGGAGTTTTATTTACTACATTGGTAGCCCGTGAAATTTGAATTCTATGGTTTATTTCCTTGGATCCTAAGTGAG--TGTCATTACAGAAGGAGTAGTGACAGTGACTGAAAAGACATTTTCTAGGTGTTTCTTCTCCACTGCTTTcattcctttcccatttgaaggCTTCCTTGTCTTTTGAGCTTATTGCCCAGCCATCAGAATT--TACTTCAACACTTTCTCGAGATGTTCGTCCT-CATTGTATTTTTACCCTTTTCCTACACTGATGACTCAGGATTTAGGAACAATGTATTTATCAGTATGTGACAGCAGTATTTGGTGTACTGAATAAGAGCAAGGT--CACTGTGGGAATCTGGGTCTGTTGtgaatcatttctttcttcacCTCTTATCTTACCATTAGTAAAGTAAGGGAATTGCTTCAGCTAATTGCTGACGTGTCatacaaatctaaaattttatagttctttatctttttctctcc-----------------------tcttaaaCATATtcaaactataattttaattgttcttttgcCTCTTTTCCTGGTGCTTTTCCTGACTGTTTAACTTGGAGTAAACAATCATTCTGTTAGTCAGCTGTATTCATTCCTGCCACAGAAATGTCATGTCAGAAGTGGAAGGGCTTTGTTCCAAAGCTAGGCATATTAATAGTTCATAGCTTTTAAATTCTAAACTGAAAATCTT---GTCTTAAAAAGTAATTGATGGAAAGAAACAAGTGGCGGTGGGGTCTGTGTTGCTTTGAGTTACAGCCTTTTTTCAGCACATTGATTCCGTGGTTCTCAATTCTGTTTGTGTATTGGAATCACCCAAGGTTTATTTTGATAGTTTAtggaaaatttgaaacatttgcaAAATAGGGAAGAACAATATAGTGAATTCTCTGTAACTATCACCCAGTTGAAACAGTAATCTAA--TCATGTATGAATACTTGCCATCTGTTTTCAACCCATTGTCCCCCAAccaattcttttgaaaaaaattccagATAATGTAACAAGTATGATCTATAACATTTTAGgatatacttta----------ttta--------------------------------tttatttgtaccagggattgaactcacgacttgcgcttgccaggcaggtatgtatgctggtg--agctaaatcccaggcccattttaggatgtattttaaaagatgagtTTGTTTTAGCGCGATCAAATTGTC----TAGGAAGCTTTT---------TGTTTCCCAGATCCTATATCTGAATCAGAA--TATTAGGATTATTCTTAGGCATATGTTCCTATAATTCTGGTACAGCCAGTCAGCCAGAGTGTACTGCTGTGATTGTTTGGAGACTGAGGTTTTCTCTTAAGCTAGTTCCT-------TGTAAAtatcttttcagtattttttctacatttactttggtgtgtgtttttattttttcatatggaAGCTTTGAGGAATATTGGGAGACTGTATAGAAGGTAGAC---TTCCATTTTGGCAAAA-----GGGAACCC-----AAATAAGCTagcctttgtttcttttaattcacaatgattttttttttttttttttgtcttttttctttttattggtactggggatcgaactcactactgcctgcttgcaaggcaggcacttatgccgctgagctaaacctccagccccaattcACATGATTTTATTGCATACTATTTTGACTTAATATtgtatagtcttttttttttaaacctatttaCCAGTCACTTAAGCTAT-CTAAAGCAGGGGTTAGCAAAC-TTTTCTGT-ATAGaccagacagtaaatattttagattttgtg

a score=19709
s chr3            97662115 370 + 160039680 TCTTTAATATAGTTTGTTCATACCCTGATTCAGTTGCTGA-ATTTGGGCTGTCTGACTTTAGTTGACGCCTAATTTAATGCCCATTAAAAACCTTTGGG--------ACCTCTTAAAAACCCTTGGGTCATAATTTATTCTAGGGATGACCTACTCCTTCTTACAGCTCCCCGGGGACAAAGAGTTTGTACCCTGGCAGCAGGATTTGGATGATTCTGTGAAGCCCGCCCAGCAGGCCCGGCCCACCGTTATCCGCTGGTCTGAAGGAGGCAAGGAGGTCTTCATCTCTGGGTCCTTCAACAATTGGAGCACCAAGATCCCTCTGATAAAGAGGTGAGGACAGGCGTCTCTGCTGAGTGTGCAGTGTGCAGGAGCAGAC
s HiC_scaffold_1 107458435 370 - 233722169 TTTTTTCTGTAGTTTGTTCAAAATCTGATTTAATTGCTAATATTAAATCTTAAAAGCTTTAAA--------AACCTAATACCCCTCCTTACCCTAGGAAGGAGAGTAACCTTTGAAGAATTCTTGGGTCACAATTTATTCTAGGGATGACCTACTCCTTCTTACAGCTACCTGGAGACAAAGACTTTGTATCATGGCAGCAGGATTTGGATGACTCTGTAAAGCCTACACAGCAGGCCCGGCCTACTGTTATCCGCTGGTCTGAAGGGGGCAAGGAAGTGTTCATCTCTGGGTCCTTCAACAATTGGAGCACCAAAATTCCACTGATTAAGAGGTGAAGACTTATGTCG-TGTTGAGTCTACAGGGTCTGGGAGCTAAC

a score=20542
s chr3            97663520 582 + 160039680 TTTCCACACTCTGTCTTCTTTAAGGAGCTTGGCCTGTCTGACCTTCTGTTTCCTTCTCTAGTCATAATGACTTCGTTGCCATCCTGGATCTTCCAGAGGGAGAGCATCAGTACAAGTTCTTTGTGGACGGACAGTGGGTTCATGATCCGTCAGAGGTAAGGCCTGCATTTGCAGCGGA--------GCCTCGGCGGCCTCCTTATGACT-TTATGCCCTCCAG--TTCATGGGCACCAGGCTCCCTGCTA-----GAGACTTGTCA----TAGCAGGAGAGGGG-------------------------CCAGTTGGGTGACGATGTGGATTGAAAAGGGTATCCAGT-------------------TTGATTT-------TATTTATTTGTT-------------------------------TGTTTATATTTCTTCACTGTTTCAGCCTGTGGTTACCAGTCAGCTTGGAACAATTAATAACTTGATCCACGTCAAGAAATCTGATTTTGAAGTATTTGACGCTTTAAAGTTAGACTCTATGGAAAGCTCGGAGACGTCATGTCGAGGTACTATTGTCCTGTTGCTTCCTCTTGCTGGGTCTTTCTTACAGTGCATATTCCTTCCCCAAACTGGTTTCTTGCTTTATTTTGCATTTTTCTGTTTtctcaggaatcttataa
s HiC_scaffold_1 107459587 665 - 233722169 ttttcatattctgttttctAAAAAGAGCTTG-----TTTGACCT---GTTTTCTTTTGTAGCCATAATGACTTTGTTGCCATCCTGGACCTCCCCGAGGGAGAACACCAGTACAAATTCTTTGTGGATGGGCAGTGGGTTCATGATCCATCAGAGGTAAAGTCTTCATCAG-AGAGGGTAGACTTTGATTTAGCAGCCTCATTTTAGCTATCATTTATATCAGGATTGATGGACCACAGCCCCAGTGCTGACTATGatcatttttaactttaattaaaaagtaaaactacaaTTCTTTTGTATATCATCCaaattttgttaagtttttggtttaaaatattctttgataGAAGACCTGTATAGTTCTTTGGTTTCCTGGAATATGTTTTTGTGACTTTCAGAGAGATTTGAAAAGGTGATTCAATGATTTTTTCTATTCACTCTTTCAGCCTGTAGTTACCAGTCAGCTTGGTACAATTAACAATTTGATCCATGTCAAGAAATCTGATTTTGAAGTATTTGATGCTTTAAAGCTAGACTCTATGGAAAGCTCTGAGACATCATGTCGAGGTAATTTGAAATATTTGCCCTCTCTTCCTATATC----------AGCATATTCTTTCCCCTAAAGTGTTTTAAGCTTTGTTTTATGTTCCCATTTCTTTTTAGGAATCTTCTAA

a score=145235
s chr3            97665495 8768 + 160039680 [encoded data, 9842 characters]
s HiC_scaffold_1 107462836 9014 - 233722169 [encoded data, 9842 characters]

a score=15481
s chr3            97669580 341 + 160039680 tgagccagaaataaaccttctctcccttacat-tggttttgatggggtgttttgccccaacagtgagtgactgtgaaagacTGAGAGCCAGGAAGAGCCAGCAGCCACCCAGATGAACGAATCACTGTGTGTGCTTCTCTCTCT-GCAGGACAGTGTGATGGTCCTTAGCGCAACCCATCGCTACAAGAAGAAGTATGTCACCACGCTGCTGTATAAGCCCATCTGAGGAAGGCGTCACGCCTTGCCCCCAAGGATTCTGGAGAAGCATCTCCCTTGCCTTTGAACTGAGCTGGCCTCCTCTGAGGCTGGCAGGCTGGTTTGTTTTGAGGCTGCTGTGTGTGT
s HiC_scaffold_1 107466732 320 - 233722169 TGACTCCAAAACCAACCTCTTTTCTATCATATCTAGTTAT---------CTCTGTTACAA--GTGAGTGGCTGTAAAGGACTGATGGCTGGAAACAGCTGCCTGTGGC--GAACTAATGAATTAGTGTATGTGCTTCTTTTCCTTGCAGGACAGTGTGATGGTCCTTAGTGCAACTCACCGCTACAAGAAGAAGTATGTCACTACGTTGCTGTACAAACCCATCTGAAG--------GCTTCTTGCCTCTGAGGATTCAGGAGAAGCCTCTTCCTTGCCTGTGAACTGAAGCAGTCTTCTCTGAGACTGGAAGGCTGATTTGCTTTGAGGCTG--ATGTGTGT

a score=9411
s chr3           97688618 283 + 160039680 GCAAAGACTTTT-----ATTAATTCTT-TTCCAAACTTTATTCCCAGGCTTCTTCAGCTTAATTTGCCCCACAGAATAAATTGTCTATACACAAAAACTGAAAAGAGTAGACATGTCCAGGGGGTTTGGGCTT--AGAATATTAAAGATCTAGATCTTATCAGATCTGT-----AAAAGAATTT--TAAAAGTAGTTATGATTTAAAATAGTATCTCCTA-TAGCTTCTG--AAAGTGAATC--CTTCAGAAGTTGTCTCAGTTCAGTTTGTCTTGTTCTCAGAAG-TGTCATCAAAATTCTCC
s HiC_scaffold_1 63112031 301 - 233722169 gccaagatttttttaaaattaatttttgtttcaaactTTATTCCCAGGCTTTTCCATCTTAATTGACTACAAAGAGTAAACTATATGTAAGCAAAAACTTACAAGAGATGCAGTGTTCAAGAGGCTTGGGCTTAAAAAATATTAGTGATCTAGATTTTATCAgttacataaacaaaaacaatttaaaaaaaacaatcctAATATAACATAGCAGCTCTCAGTAATTTCttccaagttttatctttttcagaA---TCACCAGTTCAGTTTGCCTTATTTTTAGAAGCTGTCTTGGTAACTTTTC

a score=12100
s chr3            97688626 288 + 160039680 TTTTATTAATTCTT-TTCCAAACTTTATTCCCAGGCTTCTTCAGCTTAATTTGCCCCACAGAATAAATTGTCTATACACAAAAACTGAAAAGAGTAGACATGTCCAGGGGGTTTGGG-CTTAGAATATTAAAGATCTAGATCTTATCAGATCTGT-----AAAAGAATTTT-AAAAGTAGTTATGATTTAAAATAGTATCTCCTA-TAGCTTCTGAAAG----TGAATCCTTCAGAAGTTGTCTCAGTTCAGTTTGTCTTGTTCTCAGAAGTGTCATCAAAATTCTCCACAAGATCTGGAA
s HiC_scaffold_1 222791869 296 - 233722169 ttttattattccttatttCAAACTTAATTCTCAGGTGTCTCCAGCTTAATTGGCTGCAAAGAATAAATTG----TAAGCAAATACTAAAAAGAGCTGCAATGTCTGAGGGGCTTGGATCTAAAAAAAATAGAGATCTAGATTTTATCACATCCataagcaaaaacaattttaaaaagcagtcatAATATAAAATAGCAGCTCTGAGTAACTTCTTACAAGTTTTACCTTTTTCAGAAGCTGACTCAGTTCAGTTTGCCTCATTCTTAGAATCCTCATCTAAA-TATCCACATGATTTGGaa

a score=16980
s chr3            97689249 595 + 160039680 tcctcctcctcttcTCTAGTAGCAAATGGTGCTTTTCAATCAGCAGATTGTTTGGGCAAC-TTCAGCCAGTCTCCCTAAACTAGTCACTGCCTGCACCAAGCTGGTTTAAGCTGCAGAGAAGCATTTCTGTCAGCTGCTCTGTCTCAGTGGA------------------GCCTGTAATTGTGAA-------------------GACTGAACTTCAGGGTTGTTGAAATGGACCACTGTTCCTTGGTTTGTAAACACGTTCCCCTCCTCACTATCAGAGATG-TGTTCACACCTAACTTCCTTAAGAAGAACTGCAG--TTTTTATCTCCTACTGTGGCTGTCCTATGGCCTA--TCTTCTTTCTGTGGGTGGTGCCTTTCCCACCAACACACACTTGTGCCTACAGTTTGGTGAGTTTTTCCTGGCTCACGACTATTTATTTCATTTTGTTGAAGTGGAATTCATGGG---------GGGATTAGGATTCACACTCGGG--GTCTCTGGTAGACCCTCTGAGATAAGGTGCACACTGGGGGGGGGGCGCACAGATGGCAGCATGTCTTTCATA---TTCCATATCCTTTTTCTGGGAACTGGTACAGAAGTGAGAAGCAAAGGAAAATAATTTCTTTATACACAGTTTGCT
s HiC_scaffold_1 222792173 601 - 233722169 tcatcatcatcctctcCAGTAGCAAGTGGTGCTTTTCCATCCACAAAGTGTCTGGGTAGGGTTTGGCCACTCTCCTTAAACTAGTCA--GACTGCACCAAGCTAGTTCACGATGCTGGGTAGCATTTCTGTCAGCTGTTCTGTCTCTGGGTAACATTCCTGGGGAAAGTGGCCTATAATGGTGAAAGTATTTTCTGCTAGAGATGCTTGAACTTTTGAGTTGCTGAAGTGAATAACTGTTCCTTGG-TTGTATACATACTCACCTCTTTAAT---GGTGATGTTGTTTACCTGTAACTTCTTTAATGAGAACTGAAGTTTTTTTATCATCTGCTGTGGCTGTTCTATGAACCACTTTTTCTTTCTGCAAGCAGTTACTTT-CCAC-------CACTTGTGCC----------TGAGTCTTTCCTGGTTCATGACAGGGTCTTTAATCTTGTCAGAGGAGA---TATGCGGCATCACATGGAACTAAGGCTGGTGCTCAGGTTGTCTCTGGCAGACAAGACAAGATTAGGTACACAC----ACGGGGATGCA-AGATGCCAGAGAGTACGCCAGAGAGTtacttatctatttttt-------------------aaaagactaaaaaattaCTTCATACAAACACAGATtact

a score=103808
s chr3            97689766 6528 + 160039680 [encoded data, 7226 characters]
s HiC_scaffold_1 107489878 6438 - 233722169 [encoded data, 7226 characters]

a score=21496
s chr3            97696973 1097 + 160039680 TCCTCTTCTTCCCTACCTTGGTGCAGGTTTGCTGGCTCTGCCTTGT--------CTGGGAAGCTCTGGCCAACAGCGATGGGGCCGAGACTGGCTTTGCCAGCACCACGATCCATCTGCTGTTCCAGCTGTAGCCGAAGACGGTTGTTCACTTCAATGCTCTGCTCCAACTGTCCTCTCAGAGCTCGAATCTCTGCCACCAGGCAGCTTAACTCACC------CGGGACTTGGTGACAGGAATCTAGGCTAAAAGCTGAAAGTAGAAGGGAGGACACCTAATGGCACCAGTATGCATTTCCATGTAATAGTCAG-ATATTGCTCTGTGACATTCCTTTCTGCCAAGGGTCCCACTGGAGTCTCAGGGGCTTGGCCACACGTCTGTGGGATACAACCTTCTCATTCAGCCCTGGGAGCACAGCAAGGTTGCATATAACTAGCCTGGGATTTCTCTGAGGGTCAGATTAGTCATGTGTGCCCATGAGGCGT---TTGGACTGGCAGGTGAGAATATGCCTACTGCGTCATCTCCCTGTTAAACTTTGTACTGCAG---------------------GCTAGAAAGCA---GGTCAGCACTGAACGAAAAAGGAGTGAAGGTCGAGGGAGGACAACTGAC-----------GGATTCCATATGCAGGGAGGATAATCCGAACACGTGGGGCTTCTGGGGACA---AAACACGGGAAGTCAGTCAGGTCTTAGACCTGGGCTCAACATTCCTAAGTGA-AGTTTCAATTTCTCTTCACCACTTACCACACGCA---TTTGATATGGAAGGATAAAAAGATCTAATCAACAGTCC-------------------------AAcctgagagccacttatattttgaagggcagaattagttttggattttaccaag--------------actttatctatacctccaactacctgcagggcgcagctgccctcagccctcaggccttagcccaacacataattatttttgtcaccggctacgtggacagtctaa----gcagacagagactggctg------tcctcccacctcttcaggaatgctttgtcatcaaatgagtaca-ggaaaagcctgcagctttagctaccttgctggattttggaattcaa-----------atgaagaattAGTAGTAATTGGTTTGAAATGAACTCAGGAAGGCCCATGCACTAACAGAA
s HiC_scaffold_1 107497719 1144 - 233722169 TCCCTTCTCTCCTTACCTTGG--AAGGGCAGTTGCTTCTTTCCAGGGTCGCCAACTGAGAAGTTCTGGCTAATGGAGGAGGGGCTACAGGTGGGTTTCACAGCACCAGCGTCCAATTGCTGCTCCAGCTGCAGCCGCAGACAATTGTTCATTTGAATGCTCTGCTCCAATTGTCCTCTTAGAGCTCGGATCTCTGCCACCAAGTGGTTTAAGTCACTGCTCAAAAGAACTTGGTGACAGGCATCCTGGTGGAAAgctgaaggaag-agaaagggcac----TGACCCAAGTA-ATATTCCTGAGCACGTGTGAGAACACTGCTCTGTGATACTCCCTTGTGCCAAGGACCccactataatccca-gctcttggctA-ATGCATTTATAATACAG-------ATGCAGCCACCAAGGCACATGGAGGTGGCACATATC-----------------------CAAATTACTCATTTG----CACGTAGCGTACATTTGACTAGTAGACAATAAcaagtttatt---tcatttctttattagcCTTAGTTTTGCAGTATTCTTCAAAACAACAAGGTTCTTCAAGGCAAGGAGTCAGCACTAAACTGCAGAAGGACAGGGGCTCAGTGAG--CAAGAGACCACCACACTCAGAAAtcagagaagagggaggaaggcACCAAGAC------CTTTTGGAAGCATGTAAGAATGGGAGG-CAGGCA--CCTTAGAGTAAGGAT---CCTAACTAAGTAACATTTTTAACTTCCCCTTGGTCTTCATCACCCGCATATTTCTACATACTAGGGTGAAGAGACCTGAGAAATATTCTCTAAGGCTACAGTTCTTTATCTGGAAATCTTAAAGCCAACTGTATTTCAAAAGGCAGAACTGGTTTGGGTTTTATGCAAGGCAAGAGGTCATAAACCCCATGCTTACTTTATACTGTTTATA---CCTTGTTGCATCTGGCCCACAGCCCTTAACACATTACAAGATTATTT------CTAATGATGTGAATATTCTCATTATGTAGATAATGAAAGACTGTGAGCATCCTCTGGTCATTTCAGTTAGGTTTTCTCACCAAATGACACTATGAAAAAGTTTTTA---TTATATATCATTATGGATTTGggaattaaaaataagcaattatGGAGCTTTAGTGATAA-TACTTTGAAATGAATTCTAAAAGACCCATGAACAGAAAGAA

a score=96050
s chr3            97698815 5132 + 160039680 [encoded data, 6113 characters]
s HiC_scaffold_1 107500513 5848 - 233722169 [encoded data, 6113 characters]

a score=27763
s chr3            97706287 1069 + 160039680 GAATTCACAACCATCACAGCCTGAGCTTACGAGTCTATCCATCTAC--GTGTCCCATGTCCTTTGGGGGGTAGAATGAACCTTGAACAACAAGAAAAGATGCTTTACCCAACTCTGCCTCTGAATCTTGACACCACCCTTTGTATGTTATGACAATGAT-----GTTGGACACTTAACTAAGAGCAGTCTGCAGCAAGAGATATGACTGCCCCCAAAAGCAGTCAATGAATGTGGCCATCTCTTT-----------ATAGCTATGTCCCCCTCCACAAGGGCAAAACATAATTTCTTTATCCCAACTGCCAATAAGTACTTCCCAGCCTAGTTAGGGAT--GCACACTAACATATAGTCTTGGGCCAACTCTGTTAGCAGTCTATGAGTGCCAGGTCT-------CTGA----ATACCTCCCGTAGCTGATG---TGCACACCCCAGAGACAAGAGCAG-------ATGCATTTCAGACAAGAAGCAAGC-AAGCTTTCCCTCCATCTGCCACTGCCTGTGACCCGTGCTTC-ATTTTTCCCTTTGCCACCATCAAGCCAAAGCCATGCAGAGCAAC-CACAAGGGGACCACCACTCATAAGCACACCAAGGCAACAACGGTGCTCACTTTCTCCCAGCTGCTTCTGCAGCATCTGCAGCTCTTGTTGAGCCTCAGCCAAGGACACCATCGGTGTCTCACAGCAACCCAGAAGGGGAGGCCCGGAGGGGCTGAAAGGCACAAAGCTGGGCAGAGCGGAGTGCATTGGTGTCTGGGAAAGGCTAGCCGGCTTGGGTATGGAGTGAAAGTGAAAGCCTAGAAAGAAAGAGTTAGGGAGAGAGGAGA-----CATTAGAAAGCA----AGAGAAAATCGGAGGT--CGACTGTTCCCTGATCAGAT-GTGGGCCCGTTACGTGGCCT--------------------------CACTTGCTGTGGTGTGGCCTAAGCCAGC-AAGGCCAAG--TTACTCCTAAGAAGCAGCCTGGTAGGTCTCTCCTC--CTTATCCCTTTGCCAGG-CTCACCTGCATATGTAGCCTTTGTTCCACATGGAGGCAGTTGACTACAG-AGGCAAGATGGCATGACTCATCCCTACCAAACATCAGGATGGCTCTGCTTATTTCC--TCAAAGG
s HiC_scaffold_1 107507679 1110 - 233722169 GAATCCACAATC--------CTGTGCTTGTGGTTCCAGCTACGCACAAGTCTCCCATGACCC---AGAGAGAGGACGAACATTGCACAACAAGAAAAGGGGGACTGTC-ACTTTTGCTTCTGAATCT-ATCACGACCCTTTCAAACTCAGGCTGATGATCAGGAATTAAATAA--GATTAAAAGTATCTCATAGCAGGAGATACAGTAGCCTCACAAAG-AACCCataaatgtggccatctttttttttttttttaatgaacaagtCATCTTGCATAAGCAATGCATACAATTTCTCTTTCATCCCTTAAGAGTAGTATTTTCCTAGGCTGTTGGGATTCAGCATACTTA---ACAGTAC----CCAACTCTGTCAAGAGTGGATAAGTAACAGGTCTAGACCCTCTGAGCATATATAATTGATAACTGATGAAACACACACGTCAG-GAAGAGagcagtaaataaatacattaaaaaaaaaaagcaagccgaGCTTTGCAGAAATCTTCA---GGATATAACatgttcctctgttttttacaactcCTCTGTCACACCAAAGCCATGCACAGCAACACAGTATAGAGCTGCCACTCGCAAGCACACAAAGGCAGCAGGAGTGCTCACTTTCTCCCAGCTGCTTCTGAAGCATCTGCAGCTCCTGCTGAGCCTCAGCCAAGGACACCACTGGTGTCTCACGGCAGCCAAGGAGGGGAAGACCAGAGGGTCTGAAAGGCATGAAGTTTTTCGGAGCTGAGGGCAATGGTGCCTGGGGGAGGCTAATCGGCTTGGGTATGGAGTTAAAGTGACAGCCTAGAAACAGAAAAGTAGGGAAAAAGGAGATACATCATTAGAGAGAAGGGGAGATAAAAGTGTGGGTAAAGACTA----------AGATGGTGAAACCATTCCATGACTCAACAACATCACCAGGGAAGTGGGTGGCACTTAACATGGTGCAGGCTGACCTGTCTAAAAGCAATCCTTACTCC----AGGAAGTCTGGCCTGTCTGACCTCTGCTTCCCACTCTGCCAGGAATTTCCTGCACACACGTTCTTGGCTCACCTTGAAACCAG----CTACAGAAGGCAAGATGATATTACT-----TTACCCCATGTCAGAATGGCTGTGCCTGATTGCTTTCAAAGG

a score=73661
s chr3            97709098 2468 + 160039680 actaagacaCCCACAGAAAAAGCACTGGACTGGTTAAGTAGGTAATATGCACGGGA---TAGTAGATGT----TTCTTTCTTTTCTTTGGCTATTGTAATCCTATAAAAA------TGTTGGCTGCTCCCCAGGGTGAGTGAGAGAAACGAAGGTGCTTATTTAAAAA------GCCAGCTATTAGTCAAAACCAGTCCACAGATCAAAAGCTTATTACAGATTTCTTACTTTCT-----AATTTTTAAAAACCAAACACAGATGTTAAAAGAGAAAGGCCTCCTGATTTGGGT--AGGACATGATAGATTCTGGCTTCCAGCAGTTTCCACCCTTCTCCCTGAAGGAAA-CCAAGCAGGCAGCTGAGAGAGAGAGAGACGAAGCTACTGCCCCACTGGCTTTTGCATACCTGGATGGGCCTGGCTGGCCTCCTTAGGGGGATTCTGGGGAGTTGGCAAGCTGATGGGGCTGCTGCTGGACTCGCCCTTAAGCCCCTGAGATGCACTGGCTGCTGATGGGTTAGAAGACAACACAGGAGAATGACTCGAAAGATGGATGGAGTCTACAAAACCCGTGAAGGAAAGAAAACGCTTGGTGTTCTACAGAGAACTGGAACCCAGGCCTTGTA--TCATCCGGGGGTACCAGGGCCGGAGGCTGGCTGTCATGGAAGGCCCCAGGGACAAGGACCTATTGCAGTATTTATTTTCTTGCTTTCA-ATAGCTCCTTCGGTAAGAGAACTGCCCTTGGGGGGCAGAGGGAGT-TGAGAA-CCTGAGG-----------GAATTCCTG------------------TGGCAGAGGCTCCGGGAACCCACAGATTCTCAGGGGCCACTGTGCCGAAACTGCAAG-------------------GACATAGGGTGCTCCATCTTAAAGAAGGAGGTCTAGCAGACAGAATCAATGAGAAGTAAAGGTTGGCCACCATCTTCTCACTT--GGAATTACA----TGTCCT-----------CATATGCCTGGTGGCAGTACTCAGAGTGACAGATGCTG----GTAGAGTCAGGGACAGAGCAAGGATCCGAACCCTGGGGAGCCTGTGCTTGGGACT---TGGTCCCAGAGCCATGTTGCGTTCCGCCTGCTACACACCAAAATGG---TATAAGGCCTGGATCCCAAGGTCTCCTCTCAGTCTAGACAGAGAAGGTACCACTCTGATGGTGGAGGCTACCTGAGTGACTGGGTGAGGGTTTCTTCTCGTCGTAGTGTGTGTACTCGCTGGCTACGTCCATGTCAGAGCAGGCTTCTATGTCATCCGACAGGAAGGATGTGGTGCTGGCGGAGCGGTGGGAGTCAGACACGGCGTGGCTGCTTGGGGGTGAGAGAGACCGGGTATCCAGCTTGGCCTGCAGGACCTCAATTACTTTCTCTTTCTCCTGTAGTTCCCTGCTGAGCCTGGTGGGGAAG------GAACAGGCCACAGGTGAAGCCAAGGTAACCCAGGCCAGCTAGTCTTCACTAAAGCCCACAGGGAAATCCACGTAAGCCAAAGGCACCATTCTG---------------------------------GGCATGGAGGGTATGTGTGCCATGAACAGCTAGGTGGCAGGAGCTATGCAGTAGACAGGCTACA-----TGCTAAGCACCAGCAGGGGCACAGCGGGTCCCTTAGGGCGTGGCAACTTAA----------CTAGACAGCAGCAGTCTAAGGACTATTAGC------ATCTCCAACAGGT---ATA-AAAAATCAAAGGGAGCCATGAAAAATG--TGGAACAAAACATTGTCACAGCATCCAAAACTAGGACAAGTGGCATCAGCTGGTTGGTTCAAGTATAGGCCCTTTGTATATCGCTGACAGATGAGAAACAACAACAAAAAAAGCCACAAATGCCATGTCCCTTACCACAGGCTTTTTGAGAAGGACTTAAGGGTCTGAGGCACAATCATGACACAAAGAGGTCAGACCAGTAGCCACAAATGACCCTGAGCCAGTGAGTTTGTGAGCACTACAAACTGTTTTCCCTAAGGAACTGCGGCCTTCCAGGGAACTACACCATCCGGGCCTCTTTCTCTCTATACTCTCATGGGATTCTTCTTTCTCCAAGGACACCGAGGGACTACTAAGCTAGCTGTCAATAAAACCCAGGGCAGGCTGACCTTGCAGGAAACTCCTGGGGTGGGGAGCAGGGAGGGGAAGT-------------GGGCTCTTGAT-----ACACACAAGGTTCAGCCGTGGATCAGGCTGCTTCTAGCTTACCGTGCC------TGAAACATCACTG--------------CAGCAAAA---------------------------AAATTCATATCAAAAGAAAAGAAAGAATTTGGAAGCAAGCCTCTGAGTGCTCAGTGAACTACTGCATTAATCTCGTC-----CACTTCCCCTCC-TCATCTGTTAGTGTGGGGTTACCCT----------GACTGG-------ATCCTTTAACCGACTGCCTTCAGAATTACCTGAGGGCCAGTGGCTCAAGCCCAGCTTCTTCCTTTTCACTCTTATGATCCTCTGAAAATCAAATGTAAAAAGTAAC-----AAGTTAAATGGATTCCACGTCACACCTTAGAAAGCACAGGTCCCACAAAGACACAGAACAGCTATTATGCTACACATAAGTTCAGGAGAGTTA
s HiC_scaffold_1 107509200 2475 - 233722169 ACTGGAACACCTGTAGTGGG-GCACTGTGTAGATTACATGGGTAACATGCATATGAGATTAGTAGAaatgaatttctttcctttctttagctGTCATAATTCCTTAATAAATACTTTGCTCTTTGTTCTTCAGCGTGAAATAAGAAAAGGGGcatgtttatttgaaaatgattaGCTAATTAT-AATCAAAACTGGATTACAAATCAAA-TCCTGTTGTGGATTAGttatttttctaggaacttttaaaaaatcagatccagTTGTTGATGGAGAATGGTCTTCTGATTTCTGTCTATGATATGATGTATTTAGGCCCCTA-TAGTCTATAATTTTGCCCCTGAATGAAAGTTAAACAGGCAGTTGAGGAACAG-GAGATGAAGCTTTTGCCCCACTGACTTTTGCATACCTGGATGGGCCTCGATGGCCTCCTTGGGGGGATTCTGGGGAGTTGGCAAGCTGATGGGGCTGCTTCTCGATTCAGCCTTAACCCCCTGAGATGCACTGGTTGTTGATGGTTTAGAAGACAATACAGCAGAATGATTCGAATGATGGATGGCATCTATAAAACccatgaatgaaagaaaatgtttggtGTTCTACAGAGAACTGGAATCCTGGCCTTATAATTTAACCAGGAATACCAGAGCTAGAGTCTTACTGTCATGGAATGCTTAAGGCACAAGCA-CtatttcagtgtttattttcttgttttaagatAGAAACTTCAGCaagacaaaacattttaaaggtaaTAGTAGGTCTCAGAGCCCTGAAGTCACGAATATAGCACCTCTGCAAAGTATCAGACAAGACTGACAGCATCTATAGACACCCACAGATATTTAGGAG-AATTGCTCAGGAACTGAGAGTAGCAAGGTTATTGCAGGAGATATGAGATGCTCCATCTTAAAAAGGGAGGTCTATCAGACAAattcagggaggaaaaaaagccttttcccatattctcacTTCCCACACTATAAAGTTGTCTTGGGTTCAACCGTACACTTCTGCTGGCAGAGGCCAGTATGACAGAGAGTACAGTGCAGAGTCAGGAGCAGAAGAAAGATCCTATCCCGGAGGAGCCTGTGCTTGGTACTTGCTGATCCTAGAACCACGTTGAGG-----CTAATAGA-GCCGAGACAGAGCTATAAGGCCTGGTCTTCAAGGTCACCTCTTAATCTAGATAGAGATGGCACCACTCAGAAAGTGGAGGCTACCTGGGTGACCAGATGAAGCTTTCTTGTCTTCATAGTGAGTATATTCGCTGGCTATATCCATGTCAGAGCAGGCTTCTAGCTCATCAGACAAGaaggaggtgctgctgggagaGCGGGGGGAGTCAGACAAGGCATGGCTGCTGGGAGGCGAGAGAGACTGGGCATCCAGCTTGGCCTGCAGCACTTCAAtcactttctccttctcctgcagCTCCATGCTGAGCCTGGATGGACAGTGAGGTGAATA----ACAGGTAAAACCAAGGTCATCCAGACTGCCTAGTCCTGACTAAAACTTAT-GGGAAAACCATGT-AGCCAAGGGGACCATTCTgcagaaaataatggaaaaaactCATCTTTAATTAGAGGTGAAATGTAAGTGgaacagagatggagagagaactGTAGCTATGTGGTGCACTGGCCACATAGTTTGCTAAGGACCGGTAGAGATGTGGCCAGTCCTACTAGGGACTGCTGCTTAAGGAATGGTCCCTGAACAGCTGCAGTCTGAAGACTATTTGTTATATATTCTCTAACAagtcaaatataaaaattgaaagtaaacATTGAAAATGCATATAATAAAACACTTTCCTGACACCCTAAAGTATAATAAGTGGAATCATCTAGTTGATCGACGTATAG----------------------------------------------------------------------------------------------------------ATCATG-------------------------------------------------------------------------------------------------------CACTATCCTGGTCCCTTTCACTAGGCACAGTCATGGGATTCTTGCTTCTTCAAAGAAATTTGGTGACTATTAAACTGGCTATTAACTCAACTCAAGGCAGGTCAACATTGCAAAATACT-TTATTGTGGTTATTAAATACATGAAGTATAAGGGTAGGCAAGGATCCTGGGGGTGAAAAGACTTAGTTCACTTATAGTTTGGGCTACATCCATGTTACTAAGCTAGGCAATAAAATGTCAATAGAATTATATTATGccaataaaattatacttaaaattatattattccaataaaattatatccaaaaagaggaaaaaat-------------------------atgaatCATCACATTCAgcttgttttcagtattttttctctgtgacttGTGAAGTTGTGGCTACTTTTGACCCTTTGGACTGAGGTGGTCATTATTTATcagattctcttttgaattacctGAGGGCCAGTGGCTCAAGTCCagctttttctttctcacttttatGATCTTCTGCAAACCAAATTCAAAAAGAAGCAATATAAGTTAAACAGATTCCACTTCATACATTACAACACACAGGGTTTATTCAGGCACAAAACAGGGAT-----TACACATGCATTCATGATAATCA

a score=144579
s chr3            97712991 7554 + 160039680 [encoded data, 8332 characters]
s HiC_scaffold_1 107512472 7242 - 233722169 [encoded data, 8332 characters]

a score=54989
s chr3            97723704 2933 + 160039680 agttggggtctttcttctgtgattttcagaccTCCTTGTAGCCTCTTCTGGTTCTGTATACAGCAGTGACACTTCCTGGTTAGATGATT----ATGGGTCCTGGTC----CAGAAGGCTG----CACCCATACAACTGAGGTAGAT---------TCTGTCTATT--CATATACACCTGGACAGTAACAGTGAGCATTATTATATTGAATTAAGTCCAGACTGCTTTAG-TAAGAAAAGCTACTATTTAACACTATCTAATACTATTAACTTTAT-CTAAAGAGTGT------------------------------------------------------------------------------ATGGAAGCA----------------------------------TGAAGG-----------CATGGAGCCTGTGTTGTGGAT------GACCCTGGTGAAGCACCAATGCCTTGAG--TGCAGAGGCAGGTTCCTGGCTATGGTAGCTCATGGTCTG----------------GGGGAAAGTTGGGACATACCTGATGTGGGACACAGAGGAGAATCCTGCTTCCTCAATTTGAGCCTTTAGCTCCTTGAGTTCCACCTCAGCTTTTCTCTTCTCCTCTAAGTGCTGGTGGATTTCAGCCCTCAGGTGGAGCATTTCCTCCTGAAGACACCTGTTACTGTCCTCTCCTACTGGGGAAGGGGGCTGAAGACATATGTTCTGGGTCTCCATGGTTGCCAGGCTTTTCTCCAAAGCCACCTTGATGAGCTGAAAGAGAATCAAGGTTTAAAGAAGTTAGGCCACTGGAGTTCACCCAAGATCACAAGA-------AAGGGCAGCTCCTAAAGGAAACAAAAGACAAAACTAAATGGT---CTCCTGTTTAAGG-------TAGTCATAAGGG-CCTTGGGTTTGGCCTGGGAAGCAAGGATACAAATAGTGAGTAGGAAGAATTTGTTGTTGGATGAAGAAGAGAATCCAGAGATGGTTAGATATACACATGCACGTGCGCGTGCGcacacacacacacacacacacacacacacacacacacacacaGAATGCAAACAAATGG---GGGTTAACTTGGTCTAGCAGATGCCGATACTGCAATGCTTCTCTTCATAGGGGGTAGAGTCCCTGATAGTCTGTCTCAACTTCACGGTTGCTTTATTGACCCTTGAGTAAGAGTG----CCTTGACTGTGAAGATCATGGGCCAAGATGCCAGGGCTCAGTGGCTAAGCTCCTGCCTACAACTCAGACTCCAAAGAGGAGAT------GAAGACTCGGGGCTCTAAGGAAGCAGCCAG--CAGTCAGTCCCAGAATTAAGGT---TTTTGGGCTTCAGGCAGGGCACAGCAAGGCCAAGTCTACCAACAGCAGAAGAATCAC-----------ACTGAGGGGTTGAAG-GAAGCCACCCTACTGAGCACCCAGTTTTCCTTTTCCATTATTGCCCTTGTGCCAATGCTGTCAGCTAAATTCTTTCTGTAAATCTAAGCGTGAGAG-AAGAAAACAAAGTGGAAAATTTCACAATGCCTCTCTTCTTAAGGATTCTCTTGACATCATTCCAAAATGTTTCATTTGAAACTGACCTTAGGGTGCTTTTCCCCAAGTGGGAAGTTGTGAGTATTTAGACTTTCTTGTCATACGTATGGGACTTATCTCTAGCTGATCCCTACACATTAAAAAGGGTATTAATACAACTCAAAATCTGGGTGTG--------ATAACCTACTTAGTGTGTGGCTATTTTAATGTAAGGATTTCCTCCTCCCTCCCTCCCTATTTTTTTGCCTTATATtggcctcaatctcactagtacctcaggctgtcc----ttgaacttttgactctattggctcatcctcccaagtgctaggtttacaagcagatgcTGCAGCACAAATCTCAACAGTACTTCCCATACTTCCCAGTCACTCTGGCTTCTCTTTCCTCTCAGTGACACTGTTTGGAAGTTATACTCAATTTCAGGCCAATTTTGACTCCTACTCTCTACCGCCCCCATAGTAATTTGTTTTCTTTTATCTCTCTTAATATTGTGAGT--CATGTTTGTCACTTATAAATTTATTCTGGTTATACAGACTCATATCCCACTTAACAAAAACCATTAAAATAGTTAATGTGCATCTCTATAAATCATGTAGTACTTACCTGACTAAAGATGATTCATATAATTAATTAT--GTTTTATGCATCCATTTAGGTCACTACCATATTGAACAGAATAGGGCCAGAGCAAGGCGTATGGGTCAGTGATTGATAGAGTAGCTTGGGTGGCCCCAGAGCTGTTGACCTTCGCTAGTCCTCTTAACAAAGCTATGTCACACTTATGCTGCAGGTTTCTGGTA--GC--AATCATACATAGCACACATGTAATGAATGCTATCTAGTACCACTGCAACTGAAATTGTCAAGTGCTGTGCTGCCGTGTAGGAGAGAGTCATAGACATAGCTAC---------AGGCATTCAATCCCATCTGTGCTTTCTGAGTCTAGTTGTGATTAGACTACAGACAATCTCCCTCTCTA--AGATT---GCTGCCAAATGCAGTCAGCTGATGCCATCTCTACATGAACCGCCCAACTTTTGTAAAATAAATAAATAAATACATAATAGGAATAGGTACTGGGCGGGACACTTTTGAAGGCTTATTACCATAAACTTCACTTAACTTTGTGACGTgctgagagtggtggcccatgcctgtaattacagttcttgggaggctgaagcaggagggctggaagccaggctagcctgggctacatagtaaggccatttcaaaGGCCCTGAAAATAGTGAATAGGTAGGCAAAAATAAATAAGTAAACTTTGTAATCTTACCGCTCTATATAAAGCATCTGCAATGAACATAAC------AAAAATTACCATTAGACTTGAACAGGGACAAAATAATCACTCTTTTCTTAA-----------CACTATGCTTAAAAATAGTGTCTAGCTTTAATGAGGCCTATTCATTAATAAAATACTTTCCTG-TGTATG------TATTTTATTGATTTCAGCATC-CTGTTTTCTTTCAAAGGAAAACATTTTGGCtcataaaatatggatgccggatggaccttaaggctcatctggtatgatttctcattttaa
s HiC_scaffold_1 107520064 2750 - 233722169 AGTTGGAAGGCCTCTCTAGAAATCCTC---CCCCATTATGGACTGTTCTGGTTTTGCACATGGCAGTGAAACTTCTTGAATAGGAGATTTCTTATATGTTCCAATCAATTCAAAAGTGTAATATCAGTCACACAACT-AGGAGGATATACCCATGGTTGCATATTAGCACAGGCATATAGGTAATAACA-TGGACATTATTATACTGAATTAAGACTAAATTTGTTTGGATAACAAAATATCCAACTCACCATTATTCAACATTATTAACTTTTTTctaaaggattttctttttttttcttttctttttttgtctttttcatttttatcggtaccagggatcaaactcacgactgcctgcttgcaaggtaagcgcttatgccactgagctaaatccctagcccctctctAAAGGATTTTCAAGAACATTAATCCTAGGATGTGGAGCGAATAGTACCTGGC--AGCACACATGGCTGGGGGCTGCA-AGGTGAGTCCCTGGCTATGGTTATTCATAGTTAGTAGGCTCCCCTTCTCTAAGGAAAAT---GTCCTACCTGATGTGTGACACAGAGGAGAATCCTGCTTCCTCAATTTGAGACTTTAGCTCCTTGAGTTCCTCCtcagctttcttcttttcctctaagTGCTGGTGAATCTCAGCCTTCAGGTGGAGCATTTCCTCCTGAAGACACCTATTACTATCCCCTCCTACCAGAGAAGGAGTTGGAAAAATTGTGCTCTGGCTCTCCACAGTGGCCAAACTTTTCTCCAAAGCCACCTTGATGATCTGAAACAAAATCATGG--TAAAGAAGTTAGGTAATTAAAGAGGATCCAAGAGGAACATGTGTTCCCAAGGGCATCCCTTGGGAACAACAGAAAGGCAAACTGAAAGGCAAACTTTTGTCTAAGGACTTCCTCAGCTATAAAGGTCCTAAAGATTAGTTCTGGCAGAGAGAACACATCTGTTAGGCAGGAGGAG-CTATTGCCAG--GGaaaagagaattcagagatggatgaa-----------------------gaacacacacacacacacacattaaaacaaaca---------------caaataagtGAGTTGTTTTAAGTAGGTCTGGGAG-TATGGATGTTACAATTCTT-TTTCTGTGGGGACAGGGTTCTCTG--AGTCTTCTTATAAGTCA--GAAGCTTCAACAGCTCCACAGCAGCACTGGAGTCCCTGCTCACAAAGGTCATGACTCAAGATACCATGGCTCAATGCCGTAGACCCTTTTTATAATTTAGACTCCGAGGAGGAGATGAGAAGGAGGACCTAGGGTACTTAGGAAGGAAACAGACCACTCAGTCACAGAGCTAAAGCAAGGATGAAActgaaggtaaaacaaaacaagctcaATTTCACTGGCA-CAGGGAATTTACACCCTACCACTACTGAGAAATTGAAGTGAAGCCACCCTGTCCAGCAGTCAATCATATATTTTGGTTATTACACTTGTGCCAATACTGTCAGCCAAATTCTCTCTACAGATCTAAGCATGCATGCAAGAAGAAAAGGTAGAA-----------------CTTctcagtaattttcttttcttgttt--------ttttaattaaggcagACCTTATGGT-TTTTTCCTACAATGGGAATTTGTGAACTTTTAGACTTTCTT---ACTCATTTTGGACTTTGCTCCAGTTCTTTTCTATGCTTCTCAGAATGTAGGA-------TAAAAATCTGAGTATGTAATGTATGTAATCTACTTAGTATATAACTACTTCAGTACAAGGGTTTCCAGC-----------------------------------------------------CAGGGTGTCCAACATTAATCTTATGTCT------------------GAGTGTCACATTGACA----------------------------------------------------------TATTTTTTCCTGTCAGGGGCTGTATTTAGGGCTTACATTTAACTTCAGATCAAGTCTGATTCCCAATTT-------TCTCACAG----CTATTTCAGGACATCTCTGTAAATATTGTTACTTGTATACTTGTCACTCATAAATTCATTCTGCTTATGCAGAATCACTTCCTGATTATC-AAAGCCATTAACACA-----------------------ATCTGATGGTCACTTAATTAGGAATAATTTGTAGAATTAATTATACGTTTTATGCCTTGACTCAGATCACTG--ATATTGAAAAGAAC--------------TTTTATGGATCAATGATTGACAGACCAGCTTGAGCTGACACAAAGCCATTGACGTTTGCTATTCCTTATAACAAAACATGGTGAAATTAAGGCCACTTCTTTGTGATATGGCTAATTTATACATAGCATGCATGTGC--AATAGTATCTAATACAATAGAGA---AGGTTGTAAAGAGTTGTA-------AAAGAAGAGATCCATAAACACATCTACTCAATCCCTGGGCATCTACTCCCAACTGAGGTTTGAGAGACTGACATTTGGCAGGCTCCTGACATTGTCTGTCTCTACCAGGCTTAGGCTACTAGGCTTAG---GCTAGTGACCCCTTCACATGTGGCACCAAATGCTTATAACAT---------AATGAACAATAG-----GGTGCTGGA-----------TAAAGTc------------acttttttaaagtttgtgaC------------------------------------------------------------------------CCACCCT----------------TCATT---------------------------------------------TAAACTATGTGATAATATCTTTCTATATAAACCTTTTACAACCAATTTAACTTAAATGAATATTACCATCAGATTTGAATCTCTA-GACACATTTATTCTTATCTGAAATTTAAGGGCTCCTTGTCCTTAAAAATTATGTCTAATTTTAGTGaagttaatacatttttaaagtgatttctGGATGTATGTTATCTTATTCTATTGGGTttaatttagttattttctttttaaagaaaaaattatgatttattaTATGTTTATACCAGAAGAACTTTAAGGTCCACCTGGTCTAACTATTCACTTTGa

a score=91458
s chr3            97728096 6503 + 160039680 [encoded data, 7570 characters]
s HiC_scaffold_1 107523714 6529 - 233722169 [encoded data, 7570 characters]

a score=153257
s chr3            97735552 8524 + 160039680 [encoded data, 9835 characters]
s HiC_scaffold_1 107530347 9079 - 233722169 [encoded data, 9835 characters]

a score=19268
s chr3            97745904 1348 + 160039680 AGGGACGCAGGACACCCACTGACCTAA----CTGAATCCCCACACGTG---AGTCATCAGTTCAGCCTGTCCAT----CTGTACAGCGCTAAGCTGTTTTCTAACCGACACCACAGCTGGATATGCAGCTGCTCGCACCGGGAAGACTGGGGGA---------TCCTCTAAGAA-----------CTCAATTGACAGGCAGATCACAAACAGAAGGGGCGGGGCATCTGCTCTAGGAAATGACTCCTTAGGAAGTATCTGGGGTGTTAA--GGCTTGAGTTTAAA-CCTCAATTTGGGCATTATGTTGAGCCGCTACAT---CATATTTA---------AAGTAATTAGCATTTCTATCTTTTTACCCATAAACTAGGGATGACGGCACCTATTTCACATGG------------AGGCGTGAGTCCAGGCCCTTGG-ACAGCACAGTACATGTGGAGAACACCCAGTCCACAGTGTTGCTCTGCTCACACACCCCTTGTCTACTGTGTGCAAAACGCACAGGTCTGATGTCATCCTTCCGGGCAGGAATCACAA-CCTGTCTGTTTGACACAAATGCTTTACAATT--ATTTCATTTGCTTCCTGATAGGAGGAG-------------------GGACAGACAGAAAGATGCGGGGCTTCTCAGGGCAGTAAGAGCATGTTGTTGAGGTGATAGGACCTACAACA--ATTTCTGTTTCTCTCCAAAGAGAAGAGAGGCGCCCTTGAATTTGGAGTCAG-GCATTATATGTATAGAACCGCAATGCTTAAGATATAGACCATTGGGAAGAA---AACCTAGGAACTGGCGGGCCGGCTGTGGCCAGGAGGCTCACCTGGCTTTCTCTTTCTTTTTTGGCCATGAGCTCGAGCTCCTCCTTGGCGTTGCTCAGTTCTTTCTCCAGCCCTGCAACTGTGTCCGAGTCTCCTGAAACGAATGCAC---AGCACTAGGTTTAATCGCTGAAACACGCAGCGGCCTCTGCTGCCCCATTTCTGAGCGGCTTACTCTAGAACACATCTCGGCACCTCAGAAGAAGGTGAGTAGCCGCTTTGGTCTGTAGCAATATTTGTAATGG--AAAGCCCATAGTCAAGCCACATGCTAAAAAGAACAAACGGAAAAGAGCGTCCCGTGTTCACCCAGCACCCACTACGAAGCTG--AGAGAGAATGAGAATGAAGCTGGAGAACGTAC---------TCAGATTTCAAAGCTAT------TAATCTAGATGCAAAAGACTGCATTTACTAGG-GGAAGGGGAAACGGCACACCCCCCTAGCTAAACCATCTGCTTAACTTTTAAAAAAC-----CATTCACAGGAATAAGGACAACCCAGAAACAAAGCCTATGATCCTCAGCGGGTGAGTAGAAACCAGAGAGAA--GCAGGGATGTATATGCGCCTCCTGAGCATACCTGTTTGTATATTTAATTT
s HiC_scaffold_1 107541024 1356 - 233722169 AGGAACCCATGACACTGACTGACCTAAAATACCATACCACAGCACATGTTAAGTTcttaattttactctttaattctACACTATGGCCCTAAAATGTCTTCTC-----CATCATA-CGGGACATGTAATTGGCTCAATAGGGAAGATTGAGGGGAAGGGATTCTCTTCTAAGAAAACTGATGAAATTCTACTGAGAGAAAAAg---atataaagtagaaaaaaaatgtgcTCCAGGAAATGACTTTTTATCAAATATGTGGAGTCACAAAAGACTTGAGTTTAAAATTTCAGCTTCAGCATT-TATTA----GTTATATGGCCATATTCACTCTATATTAATGAGTTAGTGTTTTAGCTTTTTTATGTATAAAAGAGAGCTGATGCTATATATTTTGTGTAGCACTGTGAACATGGGCACTAGTTTAAAAACTTGGCACAATACACTGCATATAATAGGCACTCAATGAATGCTACTGttatagtgatttttttatt-tctaaattgt---aaTTTCATAGGTTCCCTATCATAATTCTAAGCAGCAATTACAAGtacttctttttttcataaatgctttaaatttttattccagTTAATAACAGGTAGACAAAACTGTGTTTGTTCCAtacttaaaaagttttaatgataC----CAACTTACAAAAACAAGAGCATCTAactgat---aaaaaatatataacatgatttatatgtttctataaaaaaaaggcaaac---cttGCATTTGGGTTCAGAGTATTGTActtaaagaa---------tataaacataaacaattttgaaaaatagaatttaGAAATTAGC--------TTTGACTAGAAAACTTACctgactttctctttcttttttagtcatgagttcaagttcCTCTTTAGCATTGCTCAGTTCTTTCTCCAGCCCTGCAACCGTATCCAAATCTcctaaaatgaatacacagtaGTACTTATTTTGATCACT-AAACACATG-------------------------------------AGACTGCATCCAAGca----gtaaaaaaatacata-----tgtactctatagcattatttataatagcaaaatacTACAATTAATTTACGTActataaagaaaagattaaatcATTGACAGTATGTTCACACAG-----GTTAGGTAGCTGTAAAAAAGAATGTGCAAAGTGTTTACAAACTTATATGGAGTGGTTTGATGATACATTTATGTAAAACAAGCTAAACTCAAAGAAC--AATCTATTAGGAAGAAGGGGGAAACATACA------TATATGAGTTATCCGCttatatctgaaaaaaaaaaagaatacacagg---GAGGATAA-CCAGAAATGAAACTGGTTACCtgcaagagaaaaacagaaacagaagacaaCGACAGAAAAGTAGCTGCAATTTCGGAGGATACCATTCtatatatttgactt

a score=20248
s chr3            97747342 645 + 160039680 aaTCCATGTAAGGTTTGGGCAGTTTTTCTTGGAAGTAATGTATGTGTCTCCAGATTTCAGGGCAATCCAAATCGGTTTTCTAACCTATCATGACGTGTCCTGGCCAAATCTACTAG-ACAGCAAGG--GAATGCAGACAAGCAAAAGGGATCTTTATGAAGCAAAGCT-GGCACTCACCTAATGTGGACCGGGGTATGCTGGCCTCCTCTCTAGCAGTCAGTGAGGTGCTATCATCTCGAGAGGGCATCTGCATAGAACCCTGAAAATTGGAAGGGTTGTGGGGTC-AGACGGATACAGGGACTCTGACCATGGTGGCAG-ACGTGGAATAGTCTCACATAGTTTGCAGGTGAAACGCCCAAACTGCTGC----CTCAGATGCAGCAAGC--ACATG---------CAGTCGCCATGACTATGTCAGAGTCTAGAGTTCTTACTTGATCGGTTTGCTCTCCGTGGTGAGGCCCGATGGACGTCACTCCAGCTGGCTGGTTAGAGATGAACGTCTGAGACGATGTCATTAGTTCCTTCCCCCCTAAATACTGGCGCAGGGCCTGCAGTTCTGAGTTCCTTTCCATGAAGGCCTGGACCATTTTTTCTGCAGCAGCCTGG-TAAGAAGGAACCACGGCAAACGTTACCCAAGATATCATAGCAAAGTAA
s HiC_scaffold_1 107545120 633 - 233722169 AATCAACACAAGGTAAGGGCAATT---CTTAGAAGTGACATATTTCTAGCC---TTTCCGGGGAATC-GACTTATTTTTCCA-----------------TTAGCCAA-TCTATTAatacagagagacaaaaaagagaaaaacaaaaggtctCCTCATGAAATAAAACTTGATACTTACCTAATGTGGACCTGGGTATATTAGCATCCTCTTTAGTAGTCAATGAAGTGCTATC---TCTGGAGGGTATATGCATTGACCCCTAAAAATTGGAAGAATTGGGGGATTTAGGAAGATGCAAAAACTATGAGCATAATGATAGGATTCAGAATATTCTCATACAATTTGTAT-TACAATTATTAAACTTATATAAAACTGAAACACATTAAACTGAAATGTAAGAAAATCAGTCAACATGAA-ATTTATGAGTTAGTAATTCTTACTTGGTCAGTCTGCTCTCCCAAATGAGGGCCAATGGAGGTAATGTCAGCTTGTTGGTTTGAGACGAGTACTTGAGTCA---TCATGAAGTCTTTCCCTCCTAAATACTGGCGCAAGGCCTGTAATTCTGAATTTCTTTCCATTAGGGCTTGCACTATCTTCTCTGAAGCagcctagttaaaaaaaaatcacaaataacatT-TGAAAGATACTATTGTAAAATAA

a score=12048
s chr3           97747663 352 + 160039680 AATAGTCTCACATAGTTTGCAGGTGAAACGCCCAAACTGCTGCCTCAGATGCAGCAAGCACATGCAGTCGCCATGACTATGTCAG--AGTCTAGAGTTCTTACTTGATCGGTTTGCTCTCCGTGGTGAGGCCCGATGGACGTCACTCCAGCTGGCTGGTTAGAGATGAACGTCTGAGACGATGTCATTAGTTCCTTCCCCCCTAAATACTGGCGCAGGGCCTGCAGTTCTGAGTTCCTTTCCATGAAGGCCTGGACCATTTTTTCTGCAGCAGCCTGGTAAGAAGGAACCACGGCAAACGTTACCCAAGATATCATAGCAAAGTAAGTGAAATTTATTTTCAAATCTCTTTAAA
s HiC_scaffold_1 81484767 346 - 233722169 AATATTCTCACACAATTtggtattaaaattattaaacttaTGTACCTGACACAAGAAGGAAACTCAGTCAACACGAAAATCTTCATTAGCCAATGGTTCTTATTTAATCAGTCTGTTCTCCAAGCTGAGGGCCTATGGTGGTGACTTCAGCTTGTTCATTGGAGATGAGAGTCTGAGGCG---TCATAAAGTC-TTCCTTTCTAAATACTGGTGCAAGG---ACAGAACTGAATTTCTTCCCACTAAGGCTTGTACCATCTTTTCCGCAGCAACCTAGTAAGAAGAAATCACACATAGCATT-CAAAAGATATTGTAGTGAAAGAGTACAAGTTTATTTTAAAGTGTTCTTGAA

a score=63155
s chr3            97751781 2858 + 160039680 CTCATCCGGTTCTGCCCTACCGCTTACCTGTCTTTCCTGCTCCCTGGTGCCCATCGACTGGAGCAGCCCCTGGATCTCCATCTCGTGCTCCACGGCTTGTTTGTTCCGATCGCTCAGAAGGTCCTGCAGCATCCGTTCCTTTCGCTGCAAGCGCTGGCACAGTTCCTCAGCTACTTCACTCTGACCCGGTCCAAGTTTACAGAGCAGAGTTGCGCTGAGATCCTAATGT---GAAAGGGA-CGGCGTGAATTTCTGGAGGACAGAATTTTCTGTCCCGCACGTTGAAGCAC----------CCACCACAGAGAAAGGATAAGGTGCTTGGGAACAGCATAATGT----CTTATCTTTTCTCTTTCCCCAAACCCAGCACAGGCCCATGACTTGGAAGCCTGGAAATACA--------TAATGAGTACTGTCAATACAGAGAGACCCCCAGAATGGCAGCTTATGCGATCAT--TCTGAAGTAAGTAGTTTTCCTTATGCT----CGGCACACAACAGTCAATGTCAGATGGAACAAGTGGGTGCTTGGCTCACTTAGTTCCTCTG---------CAGTATAACTTTCGAGAGGGAGTAAAATCCAGGGGCTAAAGGGACTGATGGTctgggtgaggcagcacatgcctcctgcaagcccaggctcctgtgagcctcaagtaggaggatgcaaacttaaagccagcctggacataaagcaagaacctgtctgggaaaaacagaaGAGGACCAAGGAAACTGTATTCATAAAAGAGTAATGCCACGACAGCTCCTGGTCTACACAGAAAT--GCAATACATGG-AGCTTAAACCGTGGCGCCCTACAAAGTGTACCGAAG--CGGCTATGGCTCTCTGCGATGCTACGCTGACAAGTTACTTAGCCACAAGCATCTAAG---------TCCTTGCTTTGAAAGCAGAGTATACTATA---CCCTCAGGGACTTGTGAGGAGTCACTAAGTTAATTTCCATTAGGCTCTTAAAACAGCACCCAACTCAGCAAGTACATTGTAACTATTATAATACAGGTAAGTTACAATAT----AATGTAT-CCTAAGATCTAATTAATTCTCATATAGCTTCTCTGAGAATGATAAACGACATGCTAAATTTATAGTTGTAAAAAGAGTTCCCGGGGAAAGGTAGCTCCTCGCCCAGGCATAGACTATAATTAAAGACTTGGGTTGCTGGCTCCGCAGGCCTCAGGAGGCCCACTGG--GGCTGAGCCTATGC-ATCCCTAAGCCAGTTGTTCCCG---TTAGTGGAGCCTTGCCTCTACTTCTTTGTTCCTGTCGTGTAGAGATGTCTGCAATTGCTGAATGATGCTCTCCTGTTCCTTCTGCCAATGGCCAAATTTGGTTTCCAGTTCTTCTTTCAGCCACTGGAGGTTTTGGCAGGTGGCAGTTAACTGCTCCACTTCCAGGCCTCTGGCCCTCAGGAGACTCTCCATGCTCTACAAGGACAGACACAGCAAACATAAGCCAAAGGGGCACCCCACACTCCTCAGGATCAGAAATTAGTCCTTctgggtgtgctggtgcatgcttttaaaccctaatctcggcacccaggaggcagaggcagatggatttctctgacttcaaggtcaggctggtctacaaagcaaggtccaggacagtcaggaaaatgaagatagagaaaccttgccttgaaaaatcaaaaACAAAATAAAAACAAAAACAATCCAAATgagagagagaaagagagagagagagCACGAAAGAAGAGAAATTAAGACCTGCCTGACCCTTTTTGGAAGAGGAGAAAA-----CAGAGAATGGGT--TACCAGTATTTATTTACTT------ATTTTTAAGTCTGGTTTGTGGAGAGGTAAATATAGAACGTGT-----GATAAAGTAGGATTGTGGGAGTAGTTTCTCTAACAAAAAAGTGAATGGCCTCTTTAAGAACACACAGATGGTGTGTTAGATAGGTTTAGATAGGATCTAAAATAAGTATGC--AGAAAAGCTACAAGTATACATTAAGAAAA-----CAGTTATG-TGGTACTCGGGCATCTACATAATATCAACAGGGAAAACACAATATAAAGTCTGTACGTACATACTTTACCCCAACAGTGCTCATGCAAAAGTGTAT------GTGCATATCTACATTAATAGGCATGGATGAGAAGTCAGATCCATGTTAGCCGCAACCACCATCCACTACTCCCCATGAATCCGTAAGGAAAAGGAAAGAGAAGCGCCGGAAGCCTCCGACGGGCGGTGGCGGATGCGTGAATGCTACTTTCCTCTGGTTTTAATTTTGTTTCCCTT-TCAGAGCAAATACTCTGGGCTACAGAGAATGATGGAGA-GGCTGCTGCTTCAGGCCTTGAAGGCTTCAGGAGTGAGGAGAGT------AGGCTGGGTTTGGCTCTTACCTGCATGGTAGCTTCATTGGCGGACAGGACACAACGCAGTCTCTCTAAGTCATGGTCTCGGTCCCTCACAGCTAGGCGAAGCTGCCGCAGTTCCTTGTCCTTTTCTTCTAGAGCAGAGAACTTCTCATCTATGACCCGCTGCAAGGAAAGTGAGGC-TCCTAAGCACTGGACAGTTCACTGAACTATCTATCACCCTTATTCACTCAGATCCCAAGTGTGA--GAGCTGGAAGCTGAGACCCCAAAGCAGCCATTCAGACACCATCTCGGCTA-----GGACAGACGGCAGTGGGAAGGGGACGGGCCGA-------------GTACCTCTAGAGCAACAGCTCGGTCTTGTATTCGTTGCCGCAATTTCTCAAGAAACACTTCGTTTGTGTCTAGAGTTTTGTCTGCGTTGTCACGATACTGTAGGAGCTCCTGGAGTTCCTGATGAGAC--AGAAGTACTTTCCTTTATTCCTTTACC---TCTTAGCTGAATTTCTTCA-CTTTTCCAAGAAATTTGTTGTTTAGTACACATACACAA
s HiC_scaffold_1 107547628 2455 - 233722169 CTTTTCTGGCCTGGGCATAGTCCTTACTTGGCTCTCCTGCTCCCTGGTGCTCATAGACTGAAGCAAGCTCTGAACCTCCATTTCATGTTCCACAGCCTGCTTGTTCCGGTCACTAAGAAGATCCTGAAGCATCCTTTCTTTCTGCTGCAGACGCTGGCACAGCTCCTCAGCTATTTCACTCTGTCCTGGTCCAAGTTTGCAGAGCAGTGTTGCACTAAGATCCTAATGCACAGAGAGAGAGCAATATAAGTTTCTGGAAAAAAGAATGTCTTCTAGTACATATCAAAGGGCTTATAAGGATCCGACATAAAAGAACTGCGAAGTTCTTGAGACTAATATCATGTGGtactcatgtttt-tttttccccagatctACCACGGGCCTGCAATGCAAAAG-CTGGAAATACAAGTTCAGTAAATGAACACTAACAGTACAGAA-------------------TCGTACATTTGTTCTCTGAAATAAGTCCTTTCTCCTATTTTGTCAGAGCACACAATAAT--------GTTAGAACAAATGGATGTTCagctcatttatttcatttgttatctCCCCATTCTAATTTTTAccagaaatacaaaatgataagCTAAAAAAAC----------------------CATAAGTACCATAAGT---GGTTTC-----------AGCAGGATAAT------------------------------------------------------------------------------------------------ACGGGTCCTAATTT-TACAGTAATCACCAGTACATGGTAGTTAAAACTCTGGAGCCATAAAGCTTGGACTGAATACTGGCCTTGCCACT------TACTTAGCT-ATTATTTCCTGAGACAAATGAACTTCAGAAGtctgtttccttgtctgtaaGACAGGGATAACAGTATGTCCCTCATAAATTTGGGAGGACTCAGTAAGCTAATATCCAGTAAGCTCTTAAAACAGTACCTGACCCAGCATAAGCA-------CATAATAATAAAGGTTAGTAATCATATTGtagatatatattttagatgtaaTTATTTCTCACATAACTATTTTAAGAAAGATACTTGTCATCTCAAGTTTATGG-GGTGGGGAG---TCCCAGTGAAAATCAATTACTTGTCCAAGAACacaatgtttttaaagatttggGTCACTGGCCTCCTAAACAGCAAGAGTCCTAATTGAAGGCTAAGATTATATAATCACTAAGCCAACTGTATTTAAATTGACTGGAATCTTGCCTCCACTTCTTTGTTTCTGTCATGCAGAGAAGTCTGTAACTGCTGAATAATACTCTCTTGTTCCTTCTGCCAATGGCTAAATttggtttccatttcttctttcagCCACTGGAGGTTCTGACAGGTAGCAGTTAACTGTTCCAGTTCTAGGCCTTTGGCCCTCAAGAGACTCTCCATGCTCTGCAGTCACAAAGAGAGCAATCACAAGTCAA-------------------------------------------GGTGT--------------------------------ACCCA-------------------------------------------------------------CAGGGTACACAAGAGATCAGATATA-------CCTG---TGAATGATCACCAATCAA--------------------------------------------------------------------------------CTTGTTTGCAAGAGGCAAAAATTTAGCATATAATCTATCATAccaataattttgtattttcagaaACTTCT--GTCTAGTTTGTGAAGAGAGAAATGTA-agtatataaaaaaatgaaatacaatggaagaattactttttccacagagAAAGCAAATGACTTCTTTAAAAATTGACAGATA----GTCACATAAG-----------TATATAGTAAGCATGCCAAAAAAGTCTACGGTAATAAAATAAGCAAGTATTCTAGTCATGCCAATACAGGGACATGTAtataatattaatgaaaaatacataata------------------gTTGTACCCAGGCA-TGCTTATGTAAAAAGGTATATGTGGGTGTGTATCTATAGAAAAAGGTAAG--TAATAAACTAGAACTATGT-------------------------------------------------------AGCCTTTGAAGTCTACAA----TGATGAAGCATGTgagaat---------------------tattattttccttataaaagaaaatactctGGTTTTCATAAAATGATGGAGGTGGCTGATACTTAGAA---tgaaagt-----aaaggagaaaaatcaatcaatgaTAGATTCTGCTCTCACTTGCATGGTAGCTTCATTGGAAGAGAGAACACCACGCAGTCTCTCCAAGTCATGATCGCGCTCTCTCACAGCAAGATGAAGCTGCCGCagctctttgtctttttcttcgaGAGCACAGAATTTTGCATCTATAGCTTGCTGTAAGGAAAATAAAGAGtcctaaactttaaaaaattcaccA---TCTTCATCACCCTTattcaataaaatccaaaatatgaagGAACAGAAAACTAAAATCCCAAGGCA-CAAATTAGACACAAACTTAATAATATGTAGACAGA--ATAATTCATAGCATACCGAACAAACGTTTATCCTACATACCTCTAGAGCAATTGCTCTATCTTGTATTCGCTGCCGAAGTTTCTCAATCAACATTTCATTTGCTTCAAGAGTTTTGTCTGAGTTATCTCGATACTTTAAGAGCTCCTGAAATTCCTAATAAgtccaaaaaatattttcttttatttacttatccAATACTAACTGaattcctacatttttttcaactaatttgttattcagaataaaaaaacaa

a score=46757
s chr3            97754953 2950 + 160039680 GAAGATGTGTCATGGGTACATCTGTGAGGGAGTGGGAAT---------TGTATACAATGGTATGTAAAAGTTATTTGCTC--TGGAATTTAGGAGATT-------------AGAGTAGGTGACAGAGCAGATCGTATTTCTTAGTGCTCCATTTC-CCCTAAAATTGTCATTCTGTCACTGAATTCTGCAGCTGTTTCTGAAGAGATCTCTCCTGCCATGTCTTTATGAAGCAGAGTGGCTGACTCAG--AGGTGTTGCTTTTGCTGCACACTACCTGTGCTGTTTAT-ATTCACACACAGTTAGTTACGTGCTGGATAGACATCATGCTGCTCACGGATG---TTCACACACAGTTAGTTACGTGCCGGATAGACAGCATGCTGCTCACGGACTGTATTCTCTACTCACTGTGTAT-------GTTTCCATCTCCAGCAGTCCTATGTG------------GGCACAGGTGG-----GCCTCGGAGGTGGTCTGAGCAGGCATTTGGGAGCTCAGAGGCTGCTTTCGTCGAGGACTCACCTGAATTAGCTGCTCTTTGTGACTCAGACTGTGACTTAGGTGTTGGATGTTTTGTCCCTGGGTTCGAATCTCATTGTATTTTTCCGCCTCCAGAACATGGAGCTGCTGGCTCTTGCTGTGCAGTTCTCCTTGGAGGTGCTGTAAAGCCTTTCGTAATTCCTGAAATAAACAGATCGTGCTTTTATGGCAAC--------CTTGCCACGTGACCATGCGATGTGACGGTCTCAGCACTTTCAAGGCAagttgggcatgacggcatctgcccatagtcccagccgctggagagcctgagggcagaaggagctcaaacgcagggcccgcctgggcaacatagcTCCTCCATCGCATCCCCAAAACAGAACAGAGAGACAAAAAACGTCAAAGGCATGTAACAAAATATAAGGTAGCAGAGAATACCATCA--TGTAACTTGATATAGAAAGGTATAGAGAATATAAATGAAATAGGATAGG----------AAAGCTTAG----------GAAAAGTATGGAGTAGAAAGT-----------------AAAGCTGGTTCAGTGGTCCCAAGGCAGTGCTCGATTTCTGGC--------TTAAGAGGACA--------------------------GCTCTACCCTCTACCG---------------------AGTGAGGTTTGCACCAT-----AATTCTGATCCTTCCC------------------------------------------------TAATGAACTCAG-------------------CTTCCCATGCACGATCACCTGCCAAAGTCTCAGAAATTTTAATATTTCTAAGGAAAATCCAGGGCTCATAATTAATTTCTGAACTACTAAGATAGGAGACAGCACACAAAAAAAG----GATCTTTAAAATTCAGAGAACAAACAAACAAACAGCATGTGTTCCATGCTAACAAGATAGAGGACTATTTAAGGACTGTATAATGCTACATACATTT----AAATTATATGACTAATTATGCATGGACATGCCCTTCTCTACTTTACTCAATGACTTTTTCAATTTAATTAATCTATGTATTTACTTATTTATTGGTGTGTGTCTTACTTATATGAGTGCAGGTAcgcccgcgtgggggtcaaaggacaactttcaggaagtggttctctccttccggcatagttctggggcggaaacgcttgtgagtcaagcatttttcacttgttgagctacctcatcggcctcAGCTGACTTTATCCTTATAACCTCAGCGATCTCCTCCTGCACGAGGCGTAAGCACTCTGACTTCTTTCCTCCGACCCTCCTGGACATAGCTATGGGAACATAAGCCAGACCCTTTGGGAGTATTTATCCTATTAACATCTGTCGTGTGACTGCCTCTCCTGCTAAAGTAGAAA-----TAAAAAGGCAGAGTCTG--ATATCTACCTTTGTACTTCCAGGACACAGTCTGCTCATCTGGTGCATGACCTCTGGGGGCAACAAACACTG------ACCACACT--GGGTAGGCCAACGATG-----CAAGGGTTTAGGTTGGGCACAAACTGTCCTGCTCACAAGTCATGGT-GGGGCAAAGTCAGCGCTGGGAGCAAGAGAACGGTTAATGATTTACCTGGTTATGTTTCCAAGCAGCTTCCTTCTGGTGCTCTCTCTCCTGGGCTGCAGCCTCCACTAACTGCACACATCGCTTGCCATCCGCCAGCTGGCGTTCTTTCTGCCGGACCAGCCTCTGGAGCCTCTGTATTTCAAGCTGGCTGCAGAATAGAGCGCTCTGAAGGTCAAGCAGGGCTACCTGTTGCTGAGCAGGGGCAATGCCCTCTGAGCTCTGAAAAGAGGAGAATCACAATCACAGTCACAGGGA-GGGAAGCACGGAGCCCCCGGGAGACC-----------------CGGGCAGCCAGGGCGGCCCCATTC------------------CTGCCTGTGGCCCTCACGTACGTGGAGCTGTCCGAGCTGGCTCTGGTGCAGCATTTCCCGAAGCTTTGCCATTGTGTCATTTTGTCCTTCGATCACCTGGTACAGCTCCTCAGTCTGGAAATGAGAGGAGGAGGAT--AGCGTGCTAAGGTTAGCCAACGACTCGGAAAGTCCTTCTCTCTCCTGTGCAGATGTTAGGGACAGGAGCTTTCCAAAGCACCTACTTAGCGGACAATTTCCCATAGAAAGATT-TGCTGGCCTGACAATAGTG-ACATCTACAAATAGAGAGCACTTATCTACGTCACCAGCGTGACCCGTCTCCCCACAGGTCTGTGACCACGTAGCCTCTCACCTCACTTTCCCTGCTTTTAAGCATTTCCTTGAGGCTCTGGATTGTCGTATCTTGCTTCTGAGATGACTCCTGTGCAGATTTCAGCTCACAGCTCAGGTCATTCAGTTTCTCTTGAAGAATCTGAATTCAGCAG------AGAAAGTCCTGTTAGCTCCATGATGACTTTTAACCTCGAGGGCCATCACACTGTCCTGTGC---GTTTCGGGTTTAAAGAACAACTTAGGGCATACCGCCTTACTCCTTTCCCGTGCACTGTAACCATCAGACT------------ATGAAGAGAG----GCAGCAGATGTGCACTGCTTCCCTCAATGCGCAGATACCTCAGTTCTCATGCACTGCACACGTTCTTTATGTCAACAGCCAGCGTATTCTCTTGACTC
s HiC_scaffold_1 107550262 2841 - 233722169 gaggatatattattatt-tatctgtTGGGGGGGGGGAAAGCCACCCCACATATACA-TGTTATGAATAAATTGTATGACCAGTAAAATGTAAGGGATTTTATGTAAGGTTTAGAGTAGCTGACAGAACTGAACACTCTTTTTAGTGTCCCATTTCACCCTAAAACTTTCATTCTAGCA--------TGTAACTCTTATACCAATGTCATCTCCTATCA-GTCCT-----ACCAGACTGACAAAAGTAGTCAGGACTCTGTCTCGCCAAGCCCCATTAGAGTAGTGTCTGATTCACAAAG----------GTACTTGGTAAGCATC-TGCTGAATACTGTTTGCCTTTCCAGTCTCTTTGTATCTTACTTGCTGATCAGGACCTTATTCATGgattatattttttg-tctttttaaatcttcCTGATTCCCACCACTCAAAGTTCTATTTGTAGCAAATATTTAACACAGGTGACTCATACCTTA-AGGCTATATGAACAGGAACTTCTGAGCTTTTA---TGAGATCGT-GTAAACTCACCTGAAGCAGTTGTTCTTTATGACTCAGACTGTGGTTTAGGTGTTGAATGGTTTGCTCCTGTGTTCGAATCTCACTGCATTTTTCAGCCTCCAGGGTATGAAGCTGTTGGCTCTTATTCTGCAATTCTCCTTGTAAATGATGCAAAGCTTTTCGTAATTCCTGAATTGAa---atattcactttaaaaaaacaatctaAACTTGTCATTTGGTCATTAGACATAGAGACCTTAAAATTTCTAAGaca---------taatgaaatat------------------------------------aaagaactaGAAAGCA--------------------------CCATC------------------------ATTAAAAATGCTACAGAAGTATTACATAATA------------------CATTAACTGGAGTTAAATATAGGAAATTGTAAAAACTGTGTATATAGTAAGTTTGACTTATAGTTCAatacttattttcttgtttaaaaaatacgATGTAGGACTTTGTCCAACTATAACCCTAAATCCTTTACAATAAGCTCAAGGATAGACT--ATTTCTATCATGTTTTCTTAAGAGATCATGAAGATTctattaattcattttcttaatttgccatatgtagtatttttctaataataaaatcagtaatCTTTAAACCATGTATTACTTTAGATActctccaaaatattttcaattaaaatttaggACATGTTTCCTTTAAGTAtacaacaaaaaattaagaattatttcCATTCTAATTCTTCCATTACTCCTCAACCTTGCcaaattatgaaaattttaatatttgcaaTGCAAATtcaggaaatatatttaaccttCAAAGTATTAAACTAAGGATATTCATCAAGAAATAGTTTCAATCTGAATGCTTTAcagtcaaaagagaaaaaca---tatgcTCTAAGATAATAAGATAAGgatccattt----------taaaattatgtgtatttttaaaaattacatggcTCATTGTACA----------CATCATTGCTTTGATCTTGGATGttcttggtc--acttttctgtGCAGTTTACTATT-------------------------------------------------------------------------ATCCCATCCTCCAGG------------------------------------------------------------------------------------ATAACCTGAGATATCCTGTCTT-TATGAAGCTTT----CCTTGATTCCCTTTCTCAGTCCCTCCCAGAAGTCCTTTCAGGACCCTATACACAACTCCTCAGTATTAACCACACTCCAATTATGT-TCATGTGCTTGTTTTACACACTAAATTATAAGCAACTTAAGAGGAAAGGGCCTGTAGCATTTTCCAATGAATTTCCAGGACACAGCCC-CATAACCAGCACATGAAATACAC---TAACAAATGTTGGACCAAATTACACTCAGATTAAGCAAATACTGTAATTCAAGGGTTCAGGTTCAAAACCAGCTGTTCTGATAAAAAGCCACTGTCAGGTCAAAGTCAGCACTGAGGGCTATAAAGTGGTTAATGATTTACCTGGTTATGTTTCCAAGAGGCCtccttctgcttttctctctcttgcgcTGTAGTCTCCACTAACTGCACACATCGCTTGGCATCAGCCAGCTGGCGTTCCTTCTGTCTTACTGACCTCTGCAGCTTCTGTATTTCAAGTTGGCTGCAGAATAAAGCACTCTGAAGATCAAGCAGAGCCACCTGTTGCTGAGCTTGAGACGTACTGTCCGAGGTCTGAGAAGAGAGCAGAAAT-----CAGTCACAAGAACAGCAAGCAATGA--CCTCAGGGGACTGTGAACACAAACTTAAGAAGGTAACTGAGAAAGACACACTCCCAACTCTAGTATTTCCTCTCTCTGTGACCCTCACATACATGAAGTTGTCCAAGCTGGCTTTGGTGTAGCATTTCTCGAAGCTTTGCCATCGTGTCATTTTGGCTTTCAATCACCTGGTACAACTCCTCAgtctgaaaaaaagagagggaacaCCAAACATGTta--gtaaattgaaaat----aaatccaTTATCT-----------------------------------GGTACCT---------ACAATTTTTC-CAGGCTGATTATTTTGTTATGCCAATAATATATTTCTACATTCATGGAACAAATG---------------------GTTTCCTCACAGATTTCTGAATCCTAAGTGATTTACCTCACTTTCCCTGCTTTTCAGAGTTTCCTTGAGGCTTTGAATTGTATCTTCTTGCTTTTGAGATGACTCTTGAGCAGACTTTAGTTCACAGCTCATTTCGTGCAGTTTGTCTTGAAGAATCTGAattcagaaaaacagcaaaaaagttTGTTGGGACAATGATATGTTTTAACCCTAAATGCAGCCATAAAGTCCTTCCTCTGATCTATGATTTGATGAACTTCTTAGGAAACATTACAttaat-ttttcctaaatataGTAACTATTTAAGTTGTATGACaagcaaaaagagaaagtcaTAGGAAACATGAGATACTTTCTTCAATACTCGGTAAACTCAATTCTCAGtcactg--tgctttctctgt-------gATGGAGTATTCCCATGAGTC

a score=180165
s chr3            97758643 10415 + 160039680 [encoded data, 11896 characters]
s HiC_scaffold_1 107553163 10772 - 233722169 [encoded data, 11896 characters]

a score=18634
s chr3            97776295 573 + 160039680 TCCTTATATGAAGTTGTCTG-GTGTTGCCTAGGCTAC-AAATCCCTGTAAGGGTTTCCTTCTC---CGTGAGCATTCAGAACACATTCTTGCATTAGCCTCCACGTCAGATCTCTCCATGGAAACCCTGGAATGTTTACTATTTTAGGAAATATGTCTGACTGTAAGCAGTGCTGTTTACATT--AGTGCAAAAGAGACATGAATGTAAAAGCTTGAGTATCTTCGGATC--TGAGTGGGAAGGTCCTGTTTGATTAGTTAGCATCCCTCCCCAGTTCTGTTGCTCTGTGCCCAC--------------AAGGAAATCCTGTGCC--TACAGTTTGTTTAGCTGTTATTAAAGAAAATAT---------------GGGGAAAATACAAAGTAAGAATTCTTTCCGATCTCTGTTTGCAAGTACACAATTT-CCCTGCTTCCACAGTCCCTAGTTCTGGTtttttgtttttgtttttgtttttgtttttgtttttgtttttgtttttTTCAAAGGTTTGGAATGAAGTATCTCCTGTTCTGTAAGAA--AAAAATATCAATAGCTGGAATGGCTATCAGATTTCCCCTGTG---CTATTGCTCCCTTCACTGAGGAAAAG
s HiC_scaffold_1 107569581 574 - 233722169 tctttgtatgAAGTTGTCTTTGAGCTGTCTGAGCTGCTAAATCCCTTCCAGCTTTTCAGTCTCTGCCGTGAGCGTTTAAAGCACATTTTTGCCTTAACCTTCACGTCAGCTCTCTACTTGGTAACAGTGGAATGTTTGCTATTTTAGGAAATATGCTCCACTGCGTGCAATGTTATTTACATTGCATTCCAAACAAGACAT-AATGCAACAGCTTGAGTGTCTGCTGATTTGTGAGTAGGAGGGTCCTGTTTGATTAATATGTTTCCCTCCCTAATTCTATTGTCCTACGTCAATTTTAAGCCAACTAGAGTAAAattacatactaataaaatttgcTTATCTTACACTGGAGAGAAAATCTAGAGgggcaaaaaaggaaagacacaatGCAAGCATTCCTCTAGATTTTTCTTTGCAAGTACATAATTTGTCCTGTTTTCAC--CCGCTAGGTTTGGTTTCATG------------------------------------------TAAAAGCTTTGAAATGAAGCTTCCACCATTCTGTAGAAAGGGATAACACTGATAATTGAAACAACTGCTGGATTTTCCCTGCAACTCTGTGGATACCTTCACTGAGAAAAAG

a score=6045
s chr3            97778577 165 + 160039680 AAAGGTTTAAAGTGAGACTTCCTGTACTC----ATGATACACAGTCCTCCCTCCCATGCTGTCA----AAGAGAAATGCTTACGAAT-------GGGGGTACATGAGCAGTCTTCACCCAGACTATTTAAACCTAGAAGTGCGTGGCCTGTGGGCTCCCCTTTCTTCTAAGGGTCACATG
s HiC_scaffold_1 107571460 180 - 233722169 AAAGCACTTAAGTGAAACTTCTGATACTCCAAGATTGTACCCAGTCAAGACTTTCATACTGGGATCTCGTGAAAAATGCTTATCAATAGGAGGTGGGGGTAACTGAGTATTATTCACTTGGACTATTCAAACTTAGCAGTGCAAGACCTGTGAGCATTCCTTTTTTCTAAGGTTCAGGTG

a score=27274
s chr3            97792346 1005 + 160039680 tgggtctgtcctactcagtggagccctcgaaaaggggcaaggAAAT-AGAGGAGCAACAGTCTTT--ACTGTAGCCCACGA--TTGCCACCTCCTTA---------------CAgaaatcagttctgccagtgacacacggagccatagacacacatcctttccaaggtcaccctcgagataagaaacccagtccatacctggatttcaaacttacagaaccctaaactgaggcccaa-ctgagccacatctgggttcctgac--agaaaacctcgcaagatcaagatacgctgcgttatattctgcgcagtgtgtggtgatttgttacgtgccaatcagtaacaacacagtaacaacacagtGCTCGAGAGAGACTCTGAAACTGCTGCCCAGGCCACCCAGCCTGAGCCTTACCTGCACTTCCATGCTCGCTGGCTCCTCCAGCAGATGTAACAGTTGTCGTTTCTCTTGAGACAGCTGTTCCACAAGCCCCTCCTGAGCAGCCAAGCTCTGCCTCAGCTCTTCAATTCTCCTGGGCCAAAGAAA--TAAAAGGAATCTTTTCGT--GCAACCATTCAATCACTCCATTA-TTTACCTGTTTCTACATAGGCTCCTGCCACAAACCAGTGAGCTTTCCTACCGGATACCACTAAAGAGCCAACCTTAATAGGAAA---TCTGGTTCAGAAAGGCATGGCGTCTTAGAAAGGGAAGAAAACCCACAATCTGTACTAAAAGGGGAACGGCACGGCTATGAATAATGTGCTCCCCCAAGTTGGAGGACACAAAAAAGGCAGCCCAGGAAAAGACCACCAAAAACACCTACCTGTCCCTCTGAGCCAGTGCCTCAGAATATTGGTCAGGCTTCTCCTGGTCTCCTGCTGCATCTTCCCTGTTCTTGGCAGCATTCGTCCACCTCTCTGAGAGCTCCAGATTGCACCTCTTCTCTGCCTCCACCAGAGTCTCCATCTCTGTGGCTTCATTCTTTGCTAGCCTGGGTTCCTGAAAAAGGCAGGAAAGCTAAGAGGTGGTA
s HiC_scaffold_1 107574333  956 - 233722169 TGAGTTTATC-TAATCAG---AGCCCTCAAAAGAAGGCTTAGAAGTTAGAGAAGCAACAGTCTCTTCACTGCTAACTGCAAAGTAACAATCTACATAATTTATATAATcactcagaaataaatttttcca-cAACTTGAGGAAACTTAGAGGCAGATCTTTCCCAAAGTGCACTTCCAGAGAAAAA--CCAGTCCACAC----ATTTCAGACTTACGAGATACTAAACAGAGATTCTATCTAAAACAGGTCTAAACTTCTGACCTACAAAA----ATGGGAATAACATATGCtattttaaa--cttctaaatttgttgtaatttgttacacagcaatcgATAA--------TATGATCTCAG-----GAAGCAGGCCCTGGAAC--------ATACCACTCA-----AATCTTACCTGTACTTCCATGCTAGCTGGCTCCTCCTGCAGATTTAACAACTGCTGTTTCTCTTGGGAGAGTTGTTCTACAAGTCTCTCCTGGGCAGCCAAGCTCTGACTTAGTTCTTCAATTTTCCTGCAGCAAATAAAAGTAAGAACAAGTCCATTGTTAACCACTATTGAACCACTTTGGTGCTTTACTGATTCCTACTTAGGTTCCTG--------AAGTGAGTTTTCATAAGGGATATCATTGATGTttcaatcttaaaaagaaaatcttttgttGTGTAAAG--------TTTTGAAAATGATGAGGTTCCACAATCAGTTCTTAAAGGCGAACAGTGTATCT-------------TCTCCTAAGTGTGCAAACAGGCCAAAGACAACACAAA--------ACCAAAGGAACCTACTTGTCTTTCTGGGCCAGGGCCTCCAGATATTGGATTGGTTCAACCTGGTCTCCTTGTACATCTTCCCGATCTTTAGTGACTCCCTTCAGCTTCTCTGACAACTCCAGGTTacattctttctctgcttccacCAGAGCTTCGTAAAGCGCAGCCACATTCTTGGCTAGTCTGGATTccttcaaaaagaacaaaaattgagAAGCTGCA

a score=17406
s chr3            97796388 571 + 160039680 TCTGATAAATGCTATTTGCA----------------AATATCTCAACATTCACTTCCTCCTGATTAGTTCTTTCCTATTTAACAGGAAACTTACAGTCTCACGTCTGGGAGATCTGCTTATTTGGGGCAAGGTGTGTCTGACCACAGCAGACACATCTGAGAAACAGACACACCCAAGGGAAAGAAAACATG---AAACCCATAGCTTCAAAT-CGCAAATGAGAGCCTACATTCAAATGTGAAGGGGAAGGTTCAGGGCTTTGGTTTTAAATTGACTACTTTCCAGTGAGTGAGTTGGAGTCTGGGAT--GGACAGAGCTCATGCATTCATATTGCTCTTCACAGAGCTCAACTCGCAACTCACCATGTTTTATCTAGATGCTGTTTCCTGTCCTGGAGTTCTCGTTTCAGGCTCTCCACTTCAACCTTCAGCTCGATGTTCTGAAAAGAAAACACATTCACCATCTTTAGCC-CCCAGTGCTCTCT-------AACCTGCTTCCTGTTTGACTTTGGCCTTGGTCTACAGCATCTCATTGCAGTCCTTTTCAGA-----------------AATCCAAACAGATT-------------GGCAAACGAACTCTTGAGTTTCAAGATTTCC
s HiC_scaffold_1 107582771 603 - 233722169 TCTGATAAAGATTATTTGTATTGTCTTTGTAAATTAAAAGTGGAAATGTCCACTGTCTCCTGGTTAGTtcataactatttt-taagaagtttataCTTTTAGGTCTGGTCGAGTTACC-------AGCACCATCTACCTGACC---------------TAGTAGCAGAAA-GCCCAAGGGAAAGAAAGCACATAAAAGCTCAT--TTTCAAATTCCCGAATTGGCCACAACATTCAAGTGCCAGGGATAAAGTTAAGGAATTTGATTCCAAGCCTATTGTTCTCAGATTAGTGAGCCAGGCATTGGAACAGGGACAGAATTTACCTTTTCAAACTCGTCTACACAG--TTCAAACTGCAACTCACCATGTTTTATCCAGATGTTGTCTTTTATCCCGAAGTTCTCGTTTCAGGCTCTCCACTTCAACCTTCAGCTCGATGTTCTGAAAAATACAGATATTAATCATCTTTAACTGCCCAACACTCTCTATCCTGAAACCAGATTCCTCTTTGAGCCAAGCCTTGCTCCGGAGCCTCTCATCACAGTCCCTTCCACACAATTGACACAACTGAGGATCCAGATGGATCAGTAACCCAGTAAGACGAAAGAACTGTGCAGCTCCAAGATTTTC

a score=3955
s chr3           97796725 85 + 160039680 ACTCACCATGTTTTATCTAGATGCTGTTTCCTGTCCTGGAGTTCTCGTTTCAGGCTCTCCACTTCAACCTTCAGCTCGATGTTCT
s HiC_scaffold_1 80576248 85 - 233722169 ACTCACGAGGCTTTGATAAGCAGCTGCTCTTTCTCATGGAGCTCCCTCTTCAGACTTTCTACTTCCACCTTGAGCTCAATGTTCT

a score=22455
s chr3            97799762 1683 + 160039680 TAACAACATGTCAGTATACATGATAAAATCAGTGAGTACAATACTCACTGGAGATTAAAGTTGCCA-AACTGAAGCACTTTCCTTAGCCCCGCAGTT-GTGAGCTCATGGAATTCTCTGTAGAGTACAGGGTAATTCAGGGTCAGA---CCTCGGGGAACCTACTGCACATTTAGAGAC-----AGGAGAAGCCAAGGAGGAGCAGGCCTTCCACAAACAAGTCTTTACTTGAGACAAAAATAAGCATAGCAGAAATCTCACCCTAAGCAATACTGTAAATTAGAGAAACTCAAAAAGGAGTATTTTAGTGGGTGGAAGAGTTTAAGACGTTTGTGAGACACCCACCCACCCCCACACCCACACCCACACAGGTC-----TGTCCACCCCA-GTGAGCAGTAGCTGTTAACGGATGAGCTT--------------------------------CCCTCTCCAGAAAGGTAAGGTTCATAAGAGCTCTTCATACACA-AAGGAACTTCCTCTTTCAGACTTCTCTGAT-----------------------------------CACCCTGGGGC-------AGATCATCTCTGC---------------------AGAATG--------------------------------------TGGTAAGGCATGCC-------------GTGTTTTCATACAGAGTTGTATCCTCCTGACTGAGGTG--CAAGAGGGTGGTGCTTGG------AGGAT-CCCTAGAAATCATTTTAGAAGTTTCTGAAGGAATTCTTTTATGAATAAAATTCCCTTCTAGTCACAAAATTTCTAAGCAAAA-CAGAACTCTTGTAGGTACAGATAATCTAGTTCTGTTATT-----CGTGGTGTGACATTTGAGAGACA------TCCCAAAGCTTTGTAAAC--ATTTGATTCCTTCAGATTGTGACCTTTCTCTT-----------AACAATGCCACCTACTCTCCCTGTGACCTCTG----TGGTGTGAGACATCCAGGCAGCTGGACT----------CATGTGCACAACATTAAGTTTCTAGACTTTAACAGGATAGAAGACTTGGTTTATGAAGTACAACTCCTGCCTTCCCACAGAGTCTATGCTCACCATCTTCGGTT-GTATA-CTAAGGCCCCAATGAGGCACAGAGGTTGTTCCAACATGGGACAAGTGTCCCTTCTTTGCCAGGGAAGGAACAACAGTGCACTGTCTTCAGGCACAGT------CAGACCGTGCAATACCAGGGTGGT-GCCCGCCAGAGCCAGCTTGAGTATCCAGTCTCCCAAGGAGATGGAAAAAAACCAAGTGGAAAGTTTGC--TTTCTATAACAGTAGGCCCTGTGTCCACACTG--ACACTCTGTTCAGGACACCGCATCTCAAGTCCAACCTCCCTCAGTTCTTCCTGGGGTTGGTCCTGAAGCCACGCTGACTGGCTTTGATTAGATCAACACAGATGTTTATATCTGAGAGCACTGATGCCCTAAAATTAGGTGTTTGGGTAAATATGGCTAAGGGTTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgATGTATAAAGACAAAGCAAAAGGGAAAGATGCAGGGGCGGGGGAGGgacatatagacagacagacagacagacagacagacagaca-aaaagacaAAGAAAAGTGGCAGAGGGCAAGGTTGTTGACTTGTGAGATGTCAGCATTCCCTTATTCCCCTCCCCTAACCAAATACTTAATAAGCATCAACCCTTGTATGTGCAGGGCACTCTAACAGCTTTTAGATATATCAAGTCTGACACAGCCC---TCACAGAGTTTATAGCCTAAGTCTAA----TTAAGTCGTTGATTTATAGTGGACTGCA-----ATAAGCCAGAGAAAAC
s HiC_scaffold_1 107604121 1710 - 233722169 TAATAGCATATCA------ATGATAAAATCAGTAAGTAAAATAGTT-CTGGTGATTAAAATTGCCAGAACCAGTGTGTTTTGTTTGCCCTCACAGTCCATGACCTCAAGGAACTGACAGTGTAAGGAGAGGCAGGATAGGATCAGAGAGCAACGGAAACTATACTGCACCTCTGCAAATCAGTAGGAGGAAGCCAAACAGGAACAGAC-TTCCACAAACCAGGCTCTGTTTGAGTCAAAAACAAACACTACAGAA-TCTCATTCTAATCAAGTCTGTAAAgtagagaaat----aaagaaatagcTTCATAGG--AAAAAGTCACAAAATCTTGTGAGG---------------AGATAGATTCTCATGTAGTTTCTGATTATCCACCCAAAGTGAAAAGTAACTATTAGAGAATGactttgatttaaaaatcttcattttttggAATCATATCCCTTTTAGGAAAAGTATAGTTCACACGTAATTTTTGTATACAGAATGGACTTTTTC---CAGCATTTTCTGATACCACGGCCACAGCCCAATATAATATGATTACGTACACAGTGGGGTTTTTGGagggttttgtttgcttgtttgtgtttttgtactggaaattgaactcaggaccttgtgcttgccaggcaggcacttatgctgctaagctatatctctagcccccAGAGTATTTTCATAAGGAATT----CATTCTATCTGAACTGACCAAGAGACAAGTGCCTGATCCTGTATAATGCCTTAGAATACATTTCAGTAATTTAGAAAGGATTTCTTttataaa-gaagtttattttcattcactgaattttaaagcaaaaatagaacCTTGCTGGGTCTAGATA-TCTGCCTCTGTCATTAACTGTGTATTGCGACCTT----AGACTACTTATCCCCAAATCTTTATACCCTTATACAATGAACTTAAATCAGAACTTCTCCCTCTtgactataaaaattataatactaacTTAACTGTTCATCTTTTACACTGATATAAGA---------AACTGGACTATGAAGTATTCAAGGGTAAAACATTAAGGTTTTAGACTAACTTGTAGTGGAGGACTTGACTCA-GAAGTGCAG-TCCTGCCCGTCTATAGA--TCATGCCCGCTGTCTTTTCCTAGTGCAGTTCAGGCTCAGATTAGACACAGAAGTTGCTCCAACAAGCAACAAGTG-CTCTTCACTGGCAGGGAAAGGATAGCCGAGTAATGTCCTTGGCCTTAGTTACCAGCACACTACACAAGGCCAGGACGTTCTCTTGCCAGAGGCTGCTTTACTATCCAGTCTCCCAAAGGGATGG-AAAAAACCAAGTGGAAAAGTTTCAGTTTATAGACTAGTAGGATCCACATCCaaatggcaaaattttgtttaGGTCTCTG--TTTCAGGCTCAACTTGTGTCAGCCCATAATAAAGTT----CTGaaagc------aatagcattcctt------tCCTAGCCATTTA------------------CCCT--GATTAGACA---GAACACCCACATCCAGGGCTTGATGTgtg---------------------------------------------------------------------------------------------------ggagagaaagacagacataGAATGCAAAGGAAAG-------GAACAGGGTAACTGATTTGTGAGATGGtagcatttatttat---cttttttaaatcaaatatttagTGAACATCTA-CTTTATACATACAAGGCACTCTATAAG-TATTAGAAAGAACAGGACAGGCACTATCATGGTGACAGGATTTAGAGCCTATGTCTAATCAGTTAAACGGGTGATTTATAGTAGGGAGCAGGGATATAATCTAAAGTACAC

a score=28778
s chr3            97801793 1572 + 160039680 TTCTAGAGATCA-TCACTTCAGGGACTTTAGTACAGTTCCTTCAGGTTTTAATTTCAGGTATGCC----CAACTAAATAAGATGAAATGAGAATA-------TTGACATATTGAAAGTATTCAATAA-TGTAGTTTTACACAG-TAATCAGAGGCATGAACCACAGG-GAAATAGCCGATTCTGACCAACACCCAGTTTGGGAATTCAATTAAAAAAGATTAAAATGAGGTGTGCTTGGAATTTGATGTTAGAAGAAGCTATATATGTAGGGGtacatatatctctacctatacatatacctatacatataatatacatataTGCATTTTATTTGTATGTGTATATGTATTTTAGCTCATAGCAAAGCTGGACAGGACACCCAAGGATCGCCTAGCTACCCTTTGCCCCATATATATTGCTCTAAAACATGTTTACTTTTAACGAAGGATACATGAGGAAAAGTGAGGTACCCCGACTATTTTATTTAGACTCTGTGCCCAGAGGTCCCAAG-ATCCATGCTGTCTTTCTCACAGTGACCG------------------GTGTGTCACAAGCTATTCATTGTCTCTGATCACT--GTTAGTCTCTTGGTTAAGTCCCAGAG-CCTCTGCTGATCTACCCCAACCAGGCTGGCAAGTGAGAAGCCGTGCACACAAATACCAATGATCTCAGTGAGCCTCT-----CCCCTCCCCAGTACATTCCTTAGCAGGACAAACCTCCCTGACCTGGCTGGAGTCTATGTTCATAAATAGGCCTGGCTGGGCTTAACTTAGTAACTTGCAGGCCCCTGGTAAGAGCT-GGGGTGAGGCTGGAGCCCCTGCAATCCCCCAGGATA-CTTCATAGGAGACAGGCGCCCAGCCCCATTACAGGAGCTAAAACGGATGCTCCCAGCGATGTATTTCTCACAGCTGTTTAAGAGCTGCATTTCCCAGGAATCACCCTTTGCTTT-----GCTTTTATTAC-------TCCTCGGGCAGCAGGTTTAGGACTTCTGTGGAGTATA-------ATGACTATATT---------AAAGgctgggcaaat--------------tggcacatacctcttatctca------gcactcag-atgggcagatctctgtgaattcaaggccagctcctctacataaggatttcattctagccaggtctacgcagtgagaccttatctcaaaaGCCAAAACGCCCCAAACATAAATACATTGGCCAATATGGCCGGCTGAATACTTTTAAGTTCTTGATGGGATCTGACAT------GATCTGATGTTGTACTCTAATGTCTGATT--CCTGCTTTGAAAGCGTAGTCAAATGCCAATCCTCTGTTCATCTGCTCATCAGGCAACTCTG-TGAACTCAGGCCTCTCCTGGAAGCCTGGGACAGTGGTTACC----CCACAGACAGctgggccactcagcatggcaggcacaggccacccatggctactgaaccctggagatgtgactagtgcaaa----------ctgtga-------aaggacagttcacagtggattttcaatactaactatcataaaagaatatgcaagcttaaaaaacaataaagaatctttgttctttgattttatgttgaacttacaatgttaaaaatacattattaccatcaatttt-acatggctcttttcagttttt
s HiC_scaffold_1 107606575 1513 - 233722169 tTCTACAGGTCAATCACTTTAAG--TTCCAGT----TTCCTTCAGGTGTTAACTTCAGGGACATTGTGAAAACTGAATGAGAAAATGTCTAAATAAAACCACCTGACATATAACAGGTATTCAGTAAATATAGTTTCCCAAAGACAATCAGATGTGTGAGTCACAGGAGAGATAGTGAATTCTGATCCACACTAAGTTtaggaaaccaggaaaaaaagtttaaaatgagcTATGTCTGGATTTGAATAGTGCAGGAAGTGGTACATATGTGAGTGTTTATATG-----------------------GGGtaggaaatataaaagaattttgtAT-----CATCTGCTCAGTTTTgct----gcaaaattaaaaatg-----------------------------------------tgcttaaaag---attta--tttagaaaatgacaaagaggaaaaaatgacgTATGTTGCCTGTTTAG----GAGTTTAAGCATACAGATTCTCAGTGTACACACTGCTGTGTTCACACTGACCTCCAGTTCAGCCCTTTTCCGTGTGTAATGAACTAGTCATTCTATATGCTCACTCTGTTGAAATCTTGGTTGAGTCCCAGAGGCCTCAGTTAATCTGACCCAAATGAGTTGGCAAGTTAGAAAACATACACACGAATACCAATGatctcagtggtttttttttttcccctccctagTACATTCCTTACCAAGATGAATCTCTCTTGCTTGGCTTCAGTCTCTGCTCACAAATAGACCTGGCTGGTCTTAATTTAGCAAAGTGCAGGCTCCCGGCAAAACCCAGGGGTGGGGCTGGAGCCCTTGCAAT-CCACAGGATATCTTCTGCGCAGACAGGAGCCCAACCCCATTGTAGGA-CTAAGATATATGCT--CAGT-ATGAATT------------------GTTGCATTTCACAGaaaccacattttattttctgtgacttCTTATACATATGTTTTCTAGGGTCACAGTTATAGAACTTATTTGGAGTGTATTTTTCTATAGCTAAATTTTTTAATAGATAAAATGGGTACATAGAAAATCTATGCCtgctaaatatttttgaaattaccTATGACATCTAGCATGATCTGATATTTAT--ATACAAGTTCAGC---------------TTTCAGTACAGATTGGCC--CTTGATTTCATCTGTTCTCCAAG-------------AAGGATAAAAATACTTATAGGTAT-----TCTACAAACTTT----TCCTACATTGAagcttatatttaaaatatcagacTTTAAATTCTAATAACTGGCTAGCCT-------AACCATGTCTGAAAGCCAGG-CTCTATG---------ATTAGGCAACTCTTCTGAACTTAGACCTCTGCCTGGGACTAGGCACAACACTAACCTTATCAACATATAGCTATACCAGCCAGGATGGTAGAGGTGAGCCATATGTGGCTACTAAACCCTATATATGTGACTAGTGCAAATAAAAATGTGCTGTGAGCATTTCAAAGATTATTCACACT-AATTTAAAAGTCTTACTAt-accaaaaatta--------taaatatttatgaatgattttcaat-gttgatttcatattgaa---ataatattttaaatatatttttaacattaatttcaacatgcttccttttatttttt

a score=26054
s chr3            97809840 1186 + 160039680 AATGGTCGGGCAGCAGCCTGGGCTTTCCCGTGGCCC---AGGTAGGAAGGAT--TAGAAAGACAGG-----GCTTAGAGCAGACGC-TGTTTCTCATCAACTTGTGCTTTACAGGTTTGCTG--CCTTCCTAGACTT-----------CAGGAAGACTCTGGATCCAGCTCTGGGCCCACTTGTTCCTGGCTTGGGAGCAGAGCAATGAT-GTGTTCCCTGTGGCATCAAGTG--------TGGATAAG----ACCAAGTTTGCATCTATGCTGAGCAGAGATACTCAGTTTGACAGGAGAGTGCCAAATAGGGAATATCAGCTGGAGTGTGTTTGAGAAAGGCAGCTAC---TGTGGCTTTGTGGAGAGGACCTGAGACCTTGCAAGGAAAGGGGATGTGCA--GAGGAGCCGACCTCAGGCCTTCTAGCAGGCCCACAGTCTTTGTAT-----------------TAAAGTCTGTCAGCGTCCTCA---ACATTAAAGATTTCCAAACCTCTCTTGGGC--TGTTTAAGACCCTATAGGCATGAAGACATGACTGCTA------CATGGTAGCAGAACTTTCCAGTGGGCTGGGAGACAGGAATCTGGCATTACAAGGTAGCTTGTGCCTTTTATTTCCTCCCAATTTTCTCAAGCCAGGTTTCCAAATAGCTGGTATGGAAGTTGCCCAGTGAGGCCCAAAGTCACTTCTAAAGTTGCTTGGCCAAAAGCCACCTGACTAATGCTCAGCTATCCTCAGAACGCTATGTACCATGTCTGCCTTCCAGCATAAGATTGGATTAGCTGCTATCTAGCATGATAGGGTGTGCCCATTTCCAGTTTTCACCTGCCCCCATCCATCCTGCGCTTTCCCCATGTACCATGTAGCCTCATTTATCCATGCAGTTGAACTTGTTTAGATGAGG--TGAGACTAGTCAAAGCAAAAAAGCAAAAC--CCACATAGCTTTAAAAAAACATGGATAAAAGCCC----TGGGGAGAGGCCACACACAGGTGGAGAAACTAAGTATTTTCTTTTGATATCA-----CAGTATAGTGTTTGTCTTCTGTGAACAAGTCCAGTGCTTATTATGTATGCTCTATTATGGCCCGTGAGAGACAAGAAGGAAGTAAAATTAATTTCTCACAAGCACAGACATTTCTTGAATTTTTGTTGTAGCTTGAAGAGTTTGTTGTAAGCATCCTGGCCAAGAGCTTGTGTCTCCTGGATTTCAGTCTCAGCTTGGCACCTAATATTCTGTG
s HiC_scaffold_1 107623303 1159 - 233722169 AATGGTTTGCCAGGAAGCTGGACTTCCCCATGAGCCTACAAACTGGAAGGATGccagagagaaagaataaagctTAGAATGGACACCTGTAAGTGATCTGTGGGTACCTCTCAGTTCCAGAGGCTCTACCTGGGCTTGATTGCCATGCCTGGAAGACCCTGGACCCAGA---GTACCTAC------CTGATTTGGGAGCAGAGTAATGACAGTATACCCTATTGCATAATGTGAGTTATATTGGATAAGCAAGATTAGCATTACATGTGTATCGTGCATA--TACTTAGCTTAACCTGACATTGCCC--TGAGG----TCTGCAGGATTATGGCTGAGAGAAGAAACCACCTTTGTGGCTTCATGGAGAAAAGGTGGGATCTTTCAAGAAAAAGTAGTCTGGAAGGACAAGCTCTGTTGAGGCTTTTCACTAGTTCCA-AATCTTCCCATCTTTCCAGATCACTGCCTTCAGGCTAGCAGCCTGCCCACCTACGCAGAGGA----CACTGCTCACTCCAGCCTTGTCTGTG----TATGTGCCTGAAGAGGCAGCTGCCAGCCTTTCCTGGCAGCAGAGCTTTC----AGGAGGGGAGATGAAAAGCCGGCAGTGTAAGGCAGCTTGTGCCTTC-ATTCACTCCCAACCTCTTCAAGTCAAGTTTCCAAATAACAGGAATAGTA-------AGTGAGACCAAAAGTCACTTTTAAAGTTGCTTGGCAAAAAGCCACC-AAGTATTACTTAGCTGTCCCTAGAACGGCATGTACCAACTCTGCCTTTTGGTGTGTGGGTGGATTAGCTGCTATTTAATATGATAGTCTGGGCCCTTTTCCAGTTTGTACCTGTCC----CTACCCTGTGCCTTCTCCATGTATC--------------------TCAGTTGAATTTGCTCAGCCcgagaaagaaacaaagcaaaagaaaaaaagaaaacattcacagTGACTTTTGAAAACAT------ACACCCTTTATGGGGAGAG---AAACATGAGTGGAGGaactaaatattttgttttggtagCAGGCATGAGTGCAGACTCATTATGCTG-----------AGTGATGA--GTGCATATTTTGCTTTATCCTATCAATGCTAAGGGG-----AAGAACAACTTCTCACAAACAtaaaaatttcttgaatttttgttggaGACCAAGGAGCAGGTAGTTAG--------------------GCCTCCTGGTTTCCAGACTTGGCTTaagcattatttttctgtg

a score=4872
s chr3           97816110 329 + 160039680 GCCACTGAAGCACAAC-GTATCTAAACACCCAAG-----CAGAAG--ATACAGTCCACAGATAGAGAACAGGA-ATCTGTATAGGGCCTTGACTGTGAGCGAAGCTTGAGGGGCTGGAAGGTGGGCGTGGTAAGTGGGTGACAGGGAAATCACTGGGAAGGCCTGATGCGATACCCAGCACCACGGTGGACTTTATGAACACTATATACTTGGGTTACACCAAATTTA---------CCTTTAACTCTTTTAATTAAT-AATTAACCTCAGCTTATTGTAACCACTTTATAAACTTTTAATTTGTTTTATTTTGCTCTTTTGTAATAACAAGTTAAAATATAAACATA
s HiC_scaffold_1 98744783 338 - 233722169 gtcaatcaaccactacagtatataaatatagaaaatatacagAACTCATAAAGTAGAAAGATAAAAAGTGGTACAGCAGTATAAAGAAAGTACCATGAGTGGAGTGTGCAAGACTGGAATGGGCTATGAGCTATTCGCTGAGTGGAAAGTCACTGTGAAGGCCGAGGACACTTCTGTTCACTATTGTAGACTTTGTAAGCAGTACATACCTGGACCACACTAAATTTATAAAAGTTGCTTTT--CTGTTGTAAACAATAAATTACCTTTTGCTTACTAGAGctagttt------tccttctttctcttttcttttttcattgttgtagca--ttaggaattgaacaca

a score=5679
s chr3            97817250 432 + 160039680 TAAACACACAACGAGGTAA-AGGATGATCGTCTGTTACTATAGAGCAGCACTATGGTACATG-CTGCATGTGCTATGTCCTTATACACCTGGCTGTGCCACAGGCTGGGTCATACAAGCATCACTACAAACATGAAGATGAAGTACCATCCTAAACTACTACAAAGGCTATGACATCGGTGGGAGTTGCTTAGCTTCATTCAAAGCTAATGG-------------TCTGT---------------------------------------ATTTGTCCAGGTTCAATCAGGCAGAGAGAAGCAGAACCAAGGTTCTTACACCAGGACTGCCACACTCGCAGCTCAGCAATATGGTAATAGTAGGAGAAG-GACAGTTTGGTGAGCAATAAAGTCAGGAGGTTGCTCACCATACCTATAAAAGTGTGATATGTTCAAGCCTCAAAGACAACCTGGGAATAGGACCGTTCCATCTCAAAGATGAGAAAAC
s HiC_scaffold_1 107629865 443 - 233722169 TAAAGACACAAACCAGTAACATGGTTGTTGATTATCATTACCAAGTATTATTACTGTGCATAAttgtatatgatatatt-ttatatac-tgacAGAGCAATATGTTTGCTTATATCAGCATTGCCACAAGCACATAG---------------------TCACTAGG----------CAATAGGAACTTTTCAGTTCCATTAAAATCTTATGGAATTATCACCATATATGTGGTCCTTCAACAACGAAACATTGTCACGTGACACATGACATCTTCCCAAGTTAACACAGATAGTGAATGGCAGAGCCAAAACTCCT-TGCCACTTCTTTGAGGCTCTTAGTTC----------TTACTGTAGAAAAGGTGACAATCTGGAAGCCAAGTAAATCACTAAAGTGTTTACCATAGCTACAGAAATATATTGTATACAAACCTCAAAGACTGCGCAGGAAAAAGATCATCCAATCACAAAGACAAGAAAGC

a score=9098
s chr3            97820948 597 + 160039680 TCAAATGGGTGTGattttata---ttttt-----------tatttttaaaGAAATGTTTGTCCAACATGAGACAAAAAACAAGCTAAGTACAGTAACAGA----------------TGTCATGAACCACTTGACTTAC------CCCGCGGTTCTA-GTTGCTTTACTACCA--------ATTAATCTTCCCAGCCTAAAGGAATCATGATGTGAATAACAAGCATGATCAGAAGATGCACCATTACGATCATATTAT---------AAAGAGTCAGACCTCTATTTCACTTCTAAGATACCACAATAACTA-CTAGCAAGTGTATAATGATTATCCTCTTTTATAAGTGTGATGCTATTAAATTTACAAAGCAGTTGAAAAATTTTTATGTCACCTTCATGGCTGTTATTTATTCATACAACAAATGTGTCTCGGTGCCTGCGGCATTATTCTGAATATCAAT-------------------------------------------CAGTTC---------------------TGTGG---AGGCTGG--------------------------------------------------------------------------------------------------AACAGGTTTGGAGAAGCCACGTGGCTTGTCTAGT------AGTTACCTGGGGCTCCTGGTGCAGTGTTTCTGAATCCCTGGTTCTTCTATCAAGACAGAACTTTGCTGTTTCCTATCAATCCCTCATTACTACATACAGGGATA-------TTAACCTATGATATTAACAATTTTAAAACGAC
s HiC_scaffold_1 107631317 801 - 233722169 TCAGCTGGGAgtgattttttaagttttttaatataatatgtACTTTTGAACAAATACCCTTACAAAGCTAAAGAAAAACCAAGCTAAGTTTGGTGACCAAACAGGACTCTAAATTTTCCTCTAGACCACCTGAGTGGTGGTGGGCATGCACTCTTGTGTCTCTTCATCAACACGGCTGCCATTAGCTTTTCTCACCTTGTGGAATCGTGATGTAAATTACAAATGTGAACATAAGAAACATCCATGAGAATATGTGATGGTGACATTAGAAAGTCAAGCctctacttaatttttaa-atatca---taacTATCTATTATGTTTACAAAG------TGCTTCTAT------GATGCTATTAAATTTACAATGTG---------CTTTTACTGCATCTTCATGGCT---ATTTATTcacataataaataatttttagtgcCTCTGGCATTATTCTTAatgctggttcttttttttttctctgtctttttgagacagggtctcagtatgcagttcaggctggcctagggcttgctttgtagcccaggttggtgtcAAAtgtgcaacaatcctcctgcttcagcttcccaagagctgagattacaggagtgcaccactatgcctgttTTAATGCTGGTTCTTAATGTTACatcaggctcagagaggttaagtcaGTTGGGTAGGTCCCTGGATTGACTAGGGCTCCTGATGTAGTGGTTCCTAAACTCTAGTCCTTCCATTTAAACACAACTGTCCTGGTTTCTATCAATACCTCATCCCTATATAGGATGATAGACCCATTTCAACTATGGTGTTAATAA-TTGAAAATGAC

a score=76529
s chr3            97822072 5157 + 160039680 [encoded data, 6125 characters]
s HiC_scaffold_1 107631753 5629 - 233722169 [encoded data, 6125 characters]

a score=21249
s chr3            97833122 1017 + 160039680 tcaaaacCAGTGACTGTTAAATAGTTGATCCTAAATGGATCACAGGTTCTAAC-AGAAAGTCTACCTACA-TATCCTAAGTGGCCTTCACTATCCATTAGTTATGG----TTAAGTTTTATCATAAGAAAGT--TTTACTGTAATCCTCAGATAAAATGGCCCAAAACATG--ATCCACTCTACATTTTGACACAAG--GAAAACATACCCACTAGGC----------AATCTGCATGAACATGTATGGCATTTTCCCAGGACTAACAGACTAACAAGGAGAATCAAAATCATGCAATTTGTTCTTGCATTCCCCAAACCCTTTCACTGCAACACACAGGCTCTGCTCAGCATCCCAGACGCCAGCTATGAAT---------------------TCTACAAGGGCCTGGCTTTTTTTTCCCCCTTTGAGACTGGACAGTAAACAAGAGATT----------------------------GAAACTACCATATCATTCCTGAAGCTCCAGAGTCATTTAAATGCCAAACTATGGAACCCATTCTGCTTTCTGCCCTACAACTCAGCAGCACACTGGTGCCCACACTCGGCAGCCTTCTCTGGAAATAGCCAGCCCGATGACAAGAGAGCT------------CATGCAGAAGCCATCCTGGGCAGTGTCCTCGGTTGCATAGAGGATGAGGGTCCAAATGACGTCCCTTATGCCATCCCCCGCCATGCTCACACACCCATGCCACCCACAGTCCTGGAATAGCAAGGCGTCATCAATCCCCTCACACCAGAGCA--TAGGAATATATCAACACAAAACAACACAAACAACTTCCCTGGCCACCACAAATAGATGGCCCAGCCAGAAATAACGCTGCCCGAGACAGTAACGTGAGAGTCGGCAGAAGTGAGAGTCGGGCTGCGGTGATCTAGTAGTACTCAAGGACTCTCTGGATCCAAACTAGATCCTCTACCAGTC----------AACAATACCAGGACTTGGGTGTGTCCACAGTGGGCTCAACTTAGAGAGCTCAGTTGCTGAGCTTCTGCAATAAAAGGGAAGCTACCAAGCAGTGGTC-CTGCTTATGCCTCCAGGTTTTCAGTAACC
s HiC_scaffold_1 107645355 1050 - 233722169 TTAAAACTGACCATGTCTAGATGTTTCATCC--ATTAGATTGTGGGTCCCAGTTGGAAAGGCTACATAAAGTATCTC------CTTTCACTACTGAGTACTCATagattattatattttatcaaaAGGTAACCATTTGTTATAATCCTTAGATAAAACAGATTGAAATGTACTACCCATTCTATGTTttgacataaaaagaaaacatatcaaTTATGCTGCCCTGATGAATATACATGTTTATGCACTACATTCTATCAAGAAAAAC-----------GTCAATGAAAATCAGTTGGTTTCGTCTTCCACTCATCAA-CACTTTCTCCCCAACACA--GGCTTCTGCCAGTGTCCCAGGAGTCAACTACTGATACCTGCTTCAGAAAGAGTGCTGCtacaaagacctggttcttt------ctTTTGGGATTTCACAacaaactaatttttttaaatgcccttTTAAtactctttaaagaaaatttcagtaGAATGCCTgaagttctgtatttttttagATATAAAATTGTTAATGCCATCCCATTTTCTCTCCTAAAACTCAGGAGCACATCACTAGCTGTCCTCCACAgctttttcttgaaataatggGCATGGTGAGGGGAAAGCTGACAATGGTTGATAAATAAACTCTATCTTAGGCAACCTCAGCgtgtacataaaaaataaag--tcagacGATGATCCCGCTGCC--CCTCCACCATAGATACACACCCACACCACCCTCAATCCTGGAATAACAAAATGTCGTCATCATAATCACACTGGAGCCCTCTGaactatataaaaacaaaaca--aataacagcTTTCCTGGCCACCAAAAATAGATCACCCAGTTGGGCATCATGctgc---aaacaa-aatgaaatgtgtGGCAGAAAGGACAGTTGAGCCACAGT-----------------GGGAGCTTAGGCTTCAAAGTAGATTCTCCACCAGTCTGGCCCAGTTGATACCATCAGGACCTGGTTTTGTCCACAGTTGTCTCAACCCAGA----TTATTTGCTGAG--TCAAATTCAGGAGGGAAAC-ACCACTCCAGGGTCTCAACTTTTGCCT-AAGATTTTCAATAATC

a score=15176
s chr3            97839705 1088 + 160039680 CCTGGAGGAATGAAGCCCTGTCTGGTACAAAACCTTCAACATA--------GCTCTCAGGAAGCCCCTACCCGTCCTTTATCCCAAGGCCATGGAATACATGTTTT----AAAACTTACAGAACATGCCCTGATATTTTCTCCACTTTTAGGGTAGGGCATTGGAATGTGTCCTCAGTGCTCAGCAATGTT-TTCCAAAGCAATGATTTCTCTGATTGTCACGTCCCCGTCAGA----------------------------------TGTACGAAATAGACGTGAGTGTTTAAGGGTGAACACACA-----GATTAGCACTCC---ATGAACCAGAAATTGAGTTTT-------GCTATTTCTCTCAACACCTAGAGGACAAGGGTTTAA--AATGCCTCTGGTTGGCCTTTT----------CTTTGAACCCCTTATACCAGTGATTGTCAGAACTGAGAGTAAGGACTCATCCCTCATATAAGACCTGAACTGTAAAATCAGAGGACTCAGGAGTTACATCTGGAATCCAGCTGACCTTGTTAGTCCCCCCAGCTCAGCCCCACAGCATCCAGTCATTCATCCCATCAGTGGACCTGATATTCCTCACTCTTAAGCTCTCCACTGCCTCTCACCAAAAGGAGTCACAACACACTTTGCCTTTCAGAGGCACCCCTCTCAGATGCTGCGATGCTCTGCAGAAGTGCCT--GCCTTTTGAGCAGCAGCAGATCCAAAAGGTTGGGGAAAGGAGCATGTGAAGGTGCTACCACACCTACTCTC-------------------------------------GTCAC-----------------------------------------------------------------------------------------------------------CATTGTCACCCACGGAATATATCTGGAAGGATGTATTTGTGGCCCTAGGG-AATGTCTGTAATTATGACTTGAAGAAGGACAGAGTAAATGCATGGTAAAACAAC--TTCTTTTGACTTTATTGTGCTATGG--------TCATAGGGATCCCTTGTGGAC---------TAAAAGGAAACCCACTGGTCTGACAACCTATGTATAAGTACTCAAGAGATGCCCACTC------CTTGGGTATCCCCCAGAGGGCACCAAAGACCTGTTTCCTTTTTTAGAATGTGAGCATGAGACTTTCTGAGAGTCTCCTCTTGGGTGGTATAAAT--------ACAGATTCTACTGTACAGATTTCTGAGGGCTAACCCAGCATGCAGGGAGCTGGGAATCTGCACTGTACCATTGG
s HiC_scaffold_1 107655074 1285 - 233722169 CCTGAAGGAGACAGTCCTTCACTGCCACACAATCTATAGCTTGCCACTTCCTCTTTTGGAGAGTAGTGACCCATCCTTCATCTCTGGGTTATAGACAGTATGTTTTCTTAAAACCTCACAGAA-ATGTCAAAGTATTTT-GCCATTTTTAGGCTGGGATACTGGAACATGTCCTGACCCCTC--CTATATTGTTTCTAgtcaatgttttctctaatttttatgtCCCCTTGTGaaagatttttatgtaaaaagtAACATCATTCACAGTTTATAGAATGGATGAATGAACATAAGAATGAACACAGATTTGAGCATAGCACTGCTGGGTGGACGGGCGAA-GAGTTTCTGAAGAAGAAGTGTGTTTCAGCCTCTTGTTGTCTATTAGTTGATGCATATCTTTTATTGGTCTTTCTTGCCTCCTACTTTGGTTTCC----ATCAGTGATTCCCAGCAGGAGAAATAAGGGTTAGTCTGTGATATTAGAACTGAACACTAAGAGAAG-GGACTGAGGATTTATATTTGAAAGTCACCTGACC------------CCTGCTCAGCCCCACAGCATAGGGCCATTTGTCCCTCCAGTGCAGGTATTATCTCTCACTCTCACAACCCCAGTCACCCCTTGATCAAAATAAACATTAGGCAGACTGTTTTTCAGA-GCACCC----------------------ACAGAGTTGTTTTCACCCCTAGTGCCACAGCAGATCCTAAAGGTGAAAAAGAGGAGGTCACTGAGGTGTTACCACCCCAAATTCCCCATGCACAGATCTGTTCAGAGGTTCAGTATTCCGAAGTCACTTAATATTCCTGAAAACTCTATGTCTTAAGAAAATCAGTATCCATGACAACTCTGAGCAAATAAGAGCAAGCTGCTCAATTAATTCTTAGGCACATGTTACATGGAGTATTGCTGCTCCCAGGA-ATATCTGGGAGATTGTATTTTAAGTCCTAGGGAAACACCTATGATTACAAGTTAAGGAAAGGCAGGGTTAGCTTATTTCAGTacaatagtttttttgtttttgttttgaaaaggcATGTCATTCTTTTAGGTCCAATGTTATCATTCCAAGATAgcaagaaacccacttaactcagGACTTAC------TTACTC-GGTGAGGACCATTCTGGGCTTTCTTGTATCCCCCAGGGGGCATTCaagagctgtttctttttttag-acatGGCTGTAAGACATTCT--GGGTACTTTTCTGGGCCATATAAATCCCAGTAGACAGATTCTCCTGTCCAAACTTCCT-GGATTGACCCAGCTCACAAGGAGCCAGAAATCTATATTACATTGTCAG

a score=26420
s chr3            97841269 873 + 160039680 ATTTTTGCTAAAAAGCAAATGGCTCTCTCATTGAGCTCCCTGATAGAATAGACAGTATCTAGCTTTCTGGCATTGTCCAAGCTGGCAATAGAGAAAAT--TGC--------------------CCTGAGCTCACTATGTTGCAAGTACAGCTCTCTCCAGGTGTCATTTAACCTTCCTGGGTCCATCT-----AAAAACTAGGAAGATGACCAATAAAACAGAATTCACCAGTATCAGCAATTGATCTTCCACGGGCTCTAGCAAAGAACTAAAAGCATAT----ACTTAGGGTGCATACATTCTCAAAAGGGTCACCATTATGATGGCTGAGCC-ATACTCCGAAATA-----TAGATCATATT-------------------------------TTTAAATAAAATCCTGATT--CCATATTTCTGTCTCACCTTCTCAAAGTCTCGAAGAGCCTGGGTCTGTACCAGAGGGGGCTTCTCAAACGCTCTCAAGGAGTGTGCCTGCCCGAAGGGAACCCTCTCAGCACTTCTCCAGGTCTGCGACTGAACCGGAGGACCTCGATCTTTAGTGTCACTGAGAAAAGCTGGCAAGGAAACAGAACAATAAGAAAAAGAGCATTGCATAATGAAGGCAGCATGGCTGTTCTAACTGGCATGTGCCAGCAGAA---GTTCTGCAGAACATGAACCAACTGTAGGTCATATAGAAAGGATTTACACACAATATCGTATGTGGGGCTTGTTACTAATGCTCTCTGGTAAATCCCTGGTCTTAGCTTATGTCCATGCCTCTTTGTGACATGATAGCCAGACTCC------------------GTCTCT-----------ACCCAAGTTGGCCAAGTGACATGGACTCACCAACAAGTCCCACAAGA-------ATTACCCTACATGTCTCAGGGACAGAGGGCTTGTG--GCACTGCTTTTCTGCTCTCGGCTTCTTACAGTAACCTCAG
s HiC_scaffold_1 107656403 951 - 233722169 ATGCTGGTTGAGAAGCAAATGGTTCTA--ACTGAGCCACCTCATATAGCAGACAATATCCAGGCCTCTGGAGTGGTTTCAGTTGGCAATAGATAAAATAATGCTGTATAAATGGGCTGGGACTCCTGGGCTCACTGTGCTGCAACTACAGAT-TCCCAGGGTGgcatttaaatttcttaaatttatctttacCAAGAACACAGATGTT------TAAATCTGAATTCATTGGTACTGGCAATTG----TCCGCAGCCCCTGGCACATAGCTAAGATACTATCTCTACATAGGG-ACAGACGATCTTGAAAGAGACACTATCATGAGAACAATACCTATAATCCAGACTAATGCATAGGACATATTCTGTAAGACATCATTGTTTCACAGTACCGCTTTTAAATGGGATTAGAACTGTCCACCCGTGTGACTTACCTTCTCAAAGTCTCGAAGAGCCTGAGTTTGCACCTGAGGGGGCCTCTCAAATGCTCTTAAGGATTGTGTCTGCCCAAATGGGATCTTCTCACCACTTCTCCAGCTTTGTGATTGCAGCAGAGGGCCTTGATCTTTAGTGTCACTAAGAAAAGCTGTcagtgaaagaaaacaacaaaa--------tttatgtAATGAA-ACCCCATGATCATTTTAAATGGCATGTTCTAGCagaatattttctgtaaaatgtaAACCAATTCTAGGCCACATAAAAAGAATTCACATAAAGTGCCAACAGTAGACCATATAAGTAATGATCCCCAGCGAATAC---AGTACAGTTTGTGTCTGTGCCTCTTTGCAACGCGACAATCATACTCCTCCCATCCAGTACAGTCGGTTTCTCTAGCCTTTGAATCTATGCCATTCAAGTAACTTGCTCTGAccaacaaa----acaagatgaaaatgcAACTGTGTGAGTTCCAGAAAC-TAGTACTTGAGATGCTTTGCTTTTCTGCTCTTGCCTTCGT--AGTAACCCAAG

a score=13369
s chr3            97843579 554 + 160039680 CTGGAAGAGCCTCAAAT-AAAGGGAATGATAATTGGCAAGAAACAGTGACGAGAA------AGGGCACAGTCCACAGCATCCTTACCTGCTGCACTGCTTGTTCTGGGTACCATCTCTCCATCATCTTCTCCAAAATAATGCCTGTGAAAGAAAGCATAG-GTTAATTA-----ATGTAATTAATGAG-------------GTAGATGACACATCTGTGTGCTGGCCTCACCCATTTCTTCACCAGTAGTCATTACACTCTT------------GACAA--------------------AGGTCTTA---ACTGCTGTGGTCAACGATGGCAAAAGCATAGAGAATTTAATTAGTGTAAGGGCTTGGTGAGACAGAC-----TTTAAAGCCAGATAAGGAGGGTATCAACCCCATGAAGAGTAGGAGCAAAAAGATTTTCGATCAGGAGGCAACAGCCATAGTCTTTAGTCAAGAAGG---------TGTTAGAGGGATGCAG---------GGAGCAACCAGACCAAG---------------------------CTGAACCT------------TCTTAGAAAACAAAGAATAAC----------------AAAGGATCAAATA-CTTAGAGTTCACATAGAGCGTTCCAGATGCTGAGTGAGGCTATATGAAGTGAGAAAA---AAAATGGTGA
s HiC_scaffold_1 107667457 682 - 233722169 CTTAAAGCACCTCAAATTCAAGGAAATGATGGTCAACAGGAAAC-----CAAGAATTTAACAAGGCAAGGCCCATGGCATCCTTACCTGCTGCATTACTTGTTCTGGGTACCATCTCCCCATCATCCTCTGCAAAATAATCTCTGTGGAAAGAAACATATCATTAATTAACAAGATACCATCCACAAGACCCCCAGGTCTTGGGGGAAAAATATCTACATGCTGTTTTCACTTATttctccacaaatatttattaatctcCTACTACATGGAGAGACgaccattaaaaaataatttcacaaatttTAATGACTATTGTAGTAAATGAAGAAAAGTACAGAGGGAATTTAA------CAAAGGCAC----AAACAAATGCATATTTAAACCTAGATAAGGAGGATCGTAACCAGATAAATAATGGGAGTGAAGAAATATTCTCTCACAAGATGATAGCAAAGAGCCTAAGACAACAAAGACCCTAGGctgtcagagaaacagaaaaagccaaTGGTGCAACCAGACCATGTAGAGGCTTGTGAGGTGGGTTAAGGCACTGAATTTCACAACATAACATATGAGAAACCACTAAAAGACTTTAAATCAGGGATCTAAAGGACTAGAGAGCCTTGATTTTACATAGATAATTCTAGCTGCTGAATGAGTCTATATGTGGAGTGAAAAGAGAAGATGGTGA

a score=51004
s chr3            97846148 2941 + 160039680 CATTGAGTCACTGGGGTTTTATGAATCAGAAAG----ATGAACAGAGTGGCTAAAGGTTTTTAATTGCTGCTGGCCACTGTTTGG--GCAGGCT--GGGTGGGCACACAAATAAGGCAGAGGCAGAGA--TGGCTGCAATTATTTCTTCAGAGAGACGCTTTGCAATTGAACTTATTATTCTTTAAGTGTTTGGGTATCCCTAGACAGTTGTAAACAAAAGAACTCTTT-------GGTTTCCAGGGTTTCTCCTTTTAGAAGCCTGACAATAGTCACAAGGGAGACAGAAGGGACTCTGGCATTTGTTTGGAAATTGATGTT----------TGCCTCAGA---GAAACATCACTTAAATCTTCACTCTGTTAA---CCAGATGGACATGAAAGTATTAGACATGACACATTGGGAATGCACACAACTGCAAGTTCTCTATTAACCAGAAGTAGATCTCCAGC--AGCAGTCTTCCCAGCCCTCTGCCTTCCTTCTATCCTTATTAA-AGAGTCTCCCTGCAAGGGAGGCACGCCCACTCCATAAAAGAGAGGAATGTACGCGCTGCTTTTAGATTCCCTTCTGTCGAAGTGAAGCTGGAAAAAGATGTCAAAACCACTAAGCAGAATAATGGCTTGAGATTTGTATAAGGGGAAATTTATCATTATGGGTTGTCACTCACTGAGAAT--------GCTCAGTTCAAAAAGGTGGC------TGC-CCTGCTTTCAGAGGCCCAGTCAACCCTTAGGCCAAATT------CACCCATCAG-----------CCTCACCGGGGTGACCCATTTGTACATTCCATTGAAAAATGAA----------------TGGTATATCTCTTCACATGGGG-GATAAGTTCCCTTCCCCGTTTAAATCGAACAGACAAGTATTTTCCAGCTTACCACAGCCCTGCTCCTCCCAGGTTAGCCCTCCACAGGCTCCTAAGGCTGATGCCCTGGTGCAGACAAAATGCAGATGGAGTTTTGTTTCTGCTTTAAGACAAATGAAAAACCTCCCTGCTTCAGCACGCAATTCATTAGTGTGTGTGGAAAGCCACTAGGTTGCTTATATATCAATTTTACCTTTCTGGGGTTTTATTTCCTCAAATGTTCACACAAACAGAGTATGAGTTTATATTTTCTTATCTAATTACAGAGTCTATtgtgacagtttggatctgaaatgccccacccccaccccatccccgtagctccccaacagtttcagtgggtggcggtaccagaaggtgacctaaactctaggaggtgggactttggttaaggaagtaggtcaccctgc------------atatatcttgtccccaaccatccctcactctttcctgattcctgt----------ccaataagaggaaggcagctttcctctttcacaccctcattccgagat-gttctatctcaccagaggtccacaatggaaccagtgatcatgggcttaacct-cag----aattgattaaccca-----aaataaatctttcctcttttaattt-gtttttgtctagcattgtgtctcagtgatagaaat-aatgactaggGTA--AAATT----------------TCACAACAAAACTCATTTTAATGCTTTTCAAGGATCTAAG-GTACTTTCCAGACATGCTCTTGCTCAGTCCTCCTTCCTCTG--------------CTGACCAGGGGCAGGTTGCAACAAAGCAGTGGGCATCACCCCTCCCCAAGGCCTCACCTCCCCCCACCCACATGCACACACTCGGCACTCGGCTCACTGCCTGCCTGG-ATGGATCAATAACTGGAAGGATGGAAAGGCCAGTTTAGATGGG-ACTGAGTTAAAAGGCATATGCGTAATCTCTCAGGAGAATTTTTAAAAATCACTTTAGCTCTATTAACAGCTCAAGTTCTCTCTTGTACTGCCAGACAGT-AGGCACTCTCCACTGCTGGAAAAAGGTTGGGAGGGAATTTGATGCTTCCCAAGGGAAGGAAGGAACCCACAGGGCAGAGACTCTGAGTATGTGTCTAGAGGGTCGCCATTTGA---GACATCTGATAAACCCAAGTGCAGAGAGAATGGAAGGAGAGTAGAGACAGACCCCAACCCTGCGCGCGCGAGcacacacacacacgcacacgcacacacacCAAATGATAAGATATATAGGTATGTTCTTCTGTTTTAGGCAAGACCAAAatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatGTGTGTAGCCCTTCTCCTAGTTTCTCAAATCAAACTGTTTTTAGATTTAaaaacaaaacaaaacaaaacaCAAGTCCACAAATATCTCAGGTTCGGCTAACATGCTGTTCTCCCGGGCACTG-ATAGCTCTCCCACACAGATATCCAGATATCATCATTTCCCTGAGATGCTTGGACCTTTTCAAGAGAAATTTGCT-TTCCTGGATAAATGAAGAATAA-CCCCACCTTTCTCTTTCTCCCTAACCTCATTTTT-----TCTGTTAA-AAACAAGATGATTCCATAAAAATCTTGTGCACTGATGACTTGCCAAGACAAGGCTCTGTTTAACTGGAAGGACCAAGAATCTC-CAAGCACAGCCCACTCACAAGCTATTCACTTGCTTGATTTCTCTGTGCCATCTCACCCAACTTTC--TTGATCAGCTGATAAGTAACTGGTGTGGTATTAGACTCAAGCAACTCCTCAGTACTTCGTATCTTACATCGCTGGCTCTTCCTGTGCTTTGCCAAGGCCATTAGGTTGGAGATTAGCAG-------------------GACGACTACCTGCCACTCCCTGACACTCTGATGCTGGCAGAC---GAGTGATGGCTCATTTTCGTCAT-TTTTGAGAATGGTAGTTTCATT-----TACTTTTATTCAAGACACTCAGTATGCTTTGCTTG-----------AACACAGCTCCTTTGAAGATCC-AATACCACACTGG-CCTAC-TAGTCTAGTTTCTCATGATGCTGGGGAGCAAGGTGGGGGCCTGGAATCTTTCCTCCATAGCTAAGAGCAGCACCGTGATGGGACCCGCTGTGCTGTGTTTCCTAGGGAGCAGACGG
s HiC_scaffold_1 107668887 2702 - 233722169 catttAACCACTGGCATGCTGTGAATCAAAAAGGCAGATGATCATTAGCACTAA-TGTTTTAAAATG--GTAGGCTACATTTTGACAACAGACTACGGGAGGgta---------agcagagacagagagatgattATAATAATTCCA-CAGAGAGATGCTTTT--------------------------------TACTCCCAGTTGGTTGCACA-AAAAGAAATCTATACACAGAGCTTTAAAGGGTTTCACTCTTTAAAAGCCAGATAATATTCACA-GGGAGGCAGAGAAGAATCTGACATTTGTTTGGAAACTGATGTTCTTTCTTCCCTGTTTGAGGACTGGGTCTTGGCACAAATCCTCATTTTGTTAAATCCCAGATGGTCAGGAAAGTACCAGACAGAAAACACCGT-ACTGTAAACAACTGGTGATTCTGTGTTAATCAAAGGTACATGACAAGCTTGTGATTATTCCAGGttctctgcctttcctttctccttctcattaAAGTTTCCCTGAAAGTGAA-----------CAATGTAAGAGAGGAATGTAC-----------------TCCTTTGTTGAGATAAAGCAGAAGAAGGAAATCAAAGCTACTAACCATaacaatatctttaaaaattaatagggGAATACTTATC------TGTTATTGCTCACTGAGTACTTACTTACACTCAGTCCACAGACAAAGTCAATCATGCATCTGCCTTAAGGATCAAAAGCAATCCTCAGGCCAAATCAGGCTGCTCCAATATGTTTAATTTAGTCCACACTGGGTTGACCCATTTCTGATTTCCCTTGGAAAATGAGACGGTCCAAAGATGCTCGGTCTGCCTGTCCATATAAGGCGATAA----CTTGCCCCCTTTAAACAGAGCTGCCCTGTGTTTTCCTATTT----------------------GTTAGGTCCTCACA------------------------------------------------------------------------------CCATCCTTATAAACCCAACTCACT------------------------cgcttattt------------tttttaagattatacAACTCAACATATTTAAAAGGACAAAA--------------------------------------------------GACTTGAACAGACTCTACTTCACAAAATTACTGTAAACCACCCACATCTTCACTGAGCA--------------TGGAAAAGACTTTAAAAGATGAGCAGTCTACCAAC-AAGTCAGTTGCAGTGCTGAGGGACAGAGAGATGCCTG-------------CCTTACTTCTTGTAGATTTCTATGGCTGTTACCTCAATATAGAGAGACAAAATTTCATTT-------CTGCTTTAAGAGACAGTTTTA-------AGAAACCCAT--TTGCTTCAGCATACAATGACTTAATTTGCAGTGACAAGCTACTAACTGGCTTGTAAGTCACCtttacctctctgggcctcagtttcctcaagtATT---TGTAAAAGACAGACATGAATGTCTACAGTATGAAATTCTTTCTAATAGATCCTTAACTACAAAACCCAATTTAATAGCCCCCAA--ATCTTAGAGTACTTTCCAGACATG-GCCCACTCAATCCTCTTTGCTCTGAAGATTCCACATTATAGATTAGGAGCAGGTTACAACAAAGCCATGCACATCAGTCTTCCCAGCTACCTCACCCTCTTC-------ATGCAC-CACACCACGCTGAGCCTACTGC-TGCTTGGcatgaatcaataactggaatgaTATAGAGGTCACTTTAGATGGGGACTGAGTTAAAAGGCATACTTGTAATCTCtcaagaggatttttaaaaatcactttagcTCTATTAACAGCTCAGGTTCCTTCTCTTATTGCCCGGTAGTGATGCTCACTTGACTATTT-CAAAAGGCTGGGAAGGAATCTGATGCTCCCCAGGGAA--GAAGAAAATCATAGTGAAGAAACACCGAGTGTATGTCTAGGGGATTGCAATTTGTAATGATGACCAATAAGTAAAAATGCAAAGAGAATTGGTGCATGGTAGAGGCAGACTCCAGTCATG--------accacatacacatacatatacgcA--------AAGCAGTAAAGTATATTGATAAACTCTTCCGTATTATCCAAGTCTGAAAAA---------------------------------------------------ATTTCTATA---------CTCTTGATCTAATTTCTCAAATTCTAGtgttctagctttttaaaa-------------aatattggtcCATGAATGTCTCATGCTCAGCTAGCATGTCATTCCTGCAAAGCTTGTATAGTTCTCCAATAAAAGTACCCATGTATAATCTTATCTCCAAGATGCTTTgacttt-------aaattttgttcttCCTGTGTAAAAGAGGAATAAGacttacctttttctttctttctg-------tttcaacaATCTGTTAGTACAAAAACTAATTCTACTAGAATCACATGCTCT-------TGCCAAgacactattctgcttaattgGAAGACCCAAGCATTTTTCAAGGACAACCCATTCACAAGCTGTTCACTTTCTTGATTTCTACATGCTGTATCACCTACATTTCCTTTGATTAACTGATAAGTAGCTGTTAAGATATTAAATGCAAGCAATACATCAACATTTCATGTCCCACATTACTAGTTTTTCCTATAGTTTTCCATAGTAATTAGATtgggaaagaacagaaaacaattgCTTTGCTCCAAAAGCCATCTGCTA-TCCCTGATAGTCTGATGTTATCAAACTGTGCCTGATGATTCCTTCCAATAATATTCTAAGAACAGCAGTTTGATTATGGCAAGAAATATCCAAGGCACT---TTCACTTTGCTTGAAAGGGCTACTAATGCAGGTCCTTTCAAGAACAGAACATCTCACTAGTCCCACTTAGTCTAGTCAATTATCACATTGGTGGG--GGGTGGACATTTGAGTTCCCTCTCTCTTGGCAAAGGGTA--ACCACAGTGGAGGCTACAATGatatcttttcagctgcacagATGG

a score=3599
s chr3            97848582 64 + 160039680 CTTGCCAAGACAAGGCTCTGTTTAACTGGAAGGACCAAGAATCTCCAAGCACAGCCCACTCACA
s HiC_scaffold_1 107671762 64 - 233722169 CTTGCCAAGACATTATTCTGCTTAATTGGAAGATCTAAGTATTTTCAAGTACAACCGATTCACA

a score=32702
s chr3            97853501 2321 + 160039680 aaGACTCCTTTGATATGTCTTGCAAGGTTCTGTCTGGTTCAAGTGAAGGAAATGCCCTAAAGTTCAGTTTTCCATATTTTTATTTTTA---AACACATTCAATCCTGCCAAATACAAACTGGTTAGAAGGAAATAATATCTGTGTATCTGTTTTTTTTTAAACATACAATAGGTTCTGGCTCTGAAAACTTATAAATGATAGAATTTCACAAATAGTGTTAACTTGACAGTAAAGACATCTGCAGGTA-------ATAGTCTTTGAACTGCCTGTG-----------------------------------CATAAGTTTA--------------------------CAAAGCAACACATTTTCTTACATTAAAATACTGCTCATTGAGCATAATAATTACTATGGAGAACTGTC----------ACACACACCAGTAAGGCT------GCTGCCA------------CCCTTTAAGGGGTGTCTTACACTTCCTGGGCAT-TATTCAGCCACACCCAGTGAGACAGACGGCCTCA---CTGATCCTACACGTGAGGAAGAGGC-CTGGGAAGTG------GGATGCATTCAGTG----ACACCACACTGGGGCATGAAC-CTAAAAGCTGAGCT-------GGGATGACTCCAGATCTTGAAAAAGTATCTAACATAAACGGATTTATTTCCTTTTCAATTATGTGCATACCCATGTATCtgtgtgtgtatttgtgcatg---------------tgagtgtagttgcccacggaggccaaaagagggcattag--attccctggatctaaatttacacatgattgtgaatcacccgaaataggtag-tgcaaactgaacttgggtcctctgcaagaaccacaagtgctcttaaccattcaacctctccagccccCACCCCCAGACCTTTTTCTTGTTCATATACCCTATTTATATCCATGCATG----AATGTTTCCTTTGTT-TCTGCCTTAAGTCCAGAGATATGAATCCTGAGCAATTAAGA-GAAAAGCATGTTGAGCTACCTGCT---GTGCCAAGAAGATGCAGTGGAGATTTAAAACAAATTTGTTTCTCGGGATAGCAACTTACCCATGAAAGACAG--CCTATACTCGTAT--------CTGCTCTAACAAATGATATGTGACAAGTAAATTAAAATCCTGAAAGAGAAGTGTTGAGTGTGACTTATACATGTCTTATCCTGACAA---GTGTC------------------------TCTAACCAAATTTCTCTAGAGTATTGACATCTTCCCCAAGCCCCT-AGATGACAACACTGTATCTCATTCCCTACAGTCAATGAGAAGGAACTGAAA-ACACGAGAGATAATGGAGACAGACATAACAAAGCAGAAA--GCTGTTTGTGAACGTGATCTGAGACCACATCTCAGGCCTCCTTTTCACTTGCCAAGACAGACAGCAAGTGTATCCTCTAGGCTTCAAATGTTGCCAAATACTCCTACCCCACAATTTGGCACGAGAATCACAAAAAAGAGGCATTCAAATGCAAATAGGACAGAAGTCACAGATGCGGAGAGAGGGACTATTGTAAAATAAACACACTGAGATCATCATTTTTCTCATCTCCAGACCCATCATTATCATCTCTGCAAGCGAGGATGCTGACTTAGCAAAGGCCCTCACAACACACAGCACGTTATTGGGAGCG--CCCCAACATGTTCAGCATGGACTGACTTA---------CATAAGCATCCACTTCTC-CCAGCACAGGATGCAGTTACAGCCTTCACTTTACACAGTCTCTCCA-TGAAAGGGCCCATGGCCAAATGCATCTCCAGGAGGCAG-TCTCTAGAGTGTTCATCCTCAACCGCTACAGGGCACTACAAGCATCACTTACAGCCAGCATGACTACATGTCTGCACACAGACTCCAGGATTTAGAATCtctgtctgtcttgtctgtctgtctgcttgcctgtctgtctccgtctgtcttggtctgtctctgcctctctgtctgCCCCCCCTTCTTTCTCCCTCCCTCTCTCTTCCTCCCTTCCTAAAGGACAGTATTTT---TGCATGCTG-----------TCACAAAAGGCA--------------------------GTCCAGGCGATTATTTTCCTCACTTTGCCTTATAAGGCCATCAG------------GTATCTAACAGGTTCCCTCTGCCCCCTCGAATCAGCAAGGAGACAGGTGAGACATCTGTATATTGTTAAAAAGATGCATAAAAAAATCACCTACTTTGGCTTCATCCAGATCACTAGGGA-------TGGTCTCTCTGCACACTTCCAGAACCTACCTTCTGATTCCCCCTTTGGGTCCTGCCAGTGTGTTCTGTAGTCCTCAGTTTTCACTAGCGGCTAATATTTCC--AGGCCTGGGGTATGGCGAGGGCATTGGCTCAGTCCACTACAGTGCTACACTGGCTGTTTTTATTCCCTTTCTGCTTGCTTTTGATTCATGTAATCTTTCtttttttttttttttttaatttttCGAGTCTTATTTTTAATGAT
s HiC_scaffold_1 107674607 2339 - 233722169 AAAGTTCATTTCATGTGAGTTGCTAGA----ATCTGGTTCAAATGGAAGACAACTCCCAAAGGTttatcttgtatttatttatttttattagtcacATCCAATCATGGAAAGTACAAAAATGTTATAAGAAAA--AGATCTGCAT-TCTACCTTTTTTTAA---TAGGCAAAGCTCTGGTCCTGACAATTTATAAATGTTAGAATTTCACAAATAGTGTCAGCTTAAAGACAAAAATGTGTACACATAGCTGAgtatggtagctca--tgcctgtaaccccaggatttgggaagctgaggtgaaGAATTGTCATTggttcaaggccaaactgggatacaagagagttcaaagc--cagcttagaCTACATAGAAAAACtcaatctcaaaaaaacaagtCTCCATGCAACAATATCTGGACTACTGGTGCACAACTTTATAGCTCATTATGCTTTCTTAACCCAGAAATCTCTTTAATGCTGATCTTACATTAAATGATCTTACATTAAATCACCTTC-----------CAGCACCAGTTCTGGCTCTACAACTGACCGAATGCCACTGAAGAATGCTTTTTAGGCTCACTTCATGCCTCACACAGTCCTACAAAATAGACACTGCCATCCCTGCTTTACAGAGGAAGAACTAAGCGGCCTGAAAGAGTG----AAATAACTTGCCCTAGACCATT---AATTAGttacacacacctgtaattcca---acactcgaggaagctgaggtaggaaaattGAGAGTCTGAGCCCAGGATGGGCAACAttatgacttagcaagaccctgtctcaaaattaaaa-------gtaaaggaCTAGAGGTA--TAGCTATGGGCTCAA--Tgactagtataaaaaaaaaaaaa----ccttgaaagtTAAATCTATTT--------------GACTATCTCCTTCCTAACATGCCTTATTTCTACCCACACATACTTTGGTACCCTCTTTGATACCTGTTTTGAATCCAGGGA-ACAAATCctgaaaaatcaagaagaaaggaACAATAGGGTATTTACTATGGTGATATGGAGATGGGATTTAGATTcaaaagaaatttgtttcttgGAATACCGACCTATCCCTGCTGGGCGGGGCTAACATTTGTGTGTCTGATACTGATGTGATAGATATCGTGGGACAAATGAATTAAAATCCAAAAAGGGA----------GTGACTAGCACAGGTCCTATCCAAAAAAAGTGTGTCATCCAAATTTTGTATTTCCCTCCCTTTACTCAAATTTCCCCACGCTATTTGTATTTTCCCCAAGTCTCTTCTGTGATAACCCTGGGTGCTGTCCTTAACATA----GGGAATAAtctgaaagataaaaacaatgatgGAAACACACA-ATCAAGGTGGAAATGGCCCTTCATGAACATGCTTTGAGAAC---TCTGAGATCTCTATTTGTCTTGCCAAGAGAGACACTGAGTATGTCTTCTATATCCCAAATTTTGGTGAATACC---ACCCCCCAAATGGGCACCAGAGTCACAAAAGC-ACATATTCAAATGCAAATAGGGTGGAAGTCACAGATGCAGAGCACAAGATTATTATATAATGAATACAGTGAGATTATCGCTTTTTTC---TCAAGACCTATCATTATAACTTCTACAAGCAAAGATGCTGAATTGGCAAAGACTCTCAGAACAGAAAGAACATCACTGTGAGCTTCCCTCTGCACACCAAGTGTAGACTGGCTTGGCCCTGCTCCAGAAAAATCCACTTTTCAAAAGCACAGGCTGCAATTACACCCTTCACTCAACACAGTCTATTCGCTGAGGGTGACCATGACCAGATGCAACTCTGGGAGGCAGTTTTCTGGAGTGCTAATTGTCAATAACTACTGTAAGATAC-AGCATCATTG--------------TACATTT------------------ATTTagga----------------ctttttaaaagatttcctctct---------------------------------------------------------tccttttctctccttctcatTCTAAAGGAAACTATTTTGGAGGAGTGCTGTCCATCAAGTTTCATAGAAGCCATTTAATACTGTGAAAAGATAAAAGTTATTCAGGTAattgcttttctctcctttccttacaaggtcatcagacatttaaataaatatctaaaaaattCTCTGTTGTCCCT-GAGTTAACCAAAAGACAGACACCAC---------TTTTTCAAAGGACCT----GAAAATAGTGTGCTTCGGATTTAGTCATATTATCAAGGATGGTATGTGGTCTCTCT-CCCACTTCTGGAAC--attgtttgctttttacttttagtGCTG-------GTTCTGAAGTCCTTAGCTGATGTTAAAGTCTAATATTCCCAAAGCACTGGGAGCTGGTAGGACAAATGCCTTAATAT-TTAGAGCCCTAGACTGGATAT----------------CAAGAGGTTTAGCCACATAATCTtctattgttcattttattt----------atgtctatttttaatgat

a score=43586
s chr3            97858390 3196 + 160039680 TTATAAGGAATGTTCTTTTACAGGAAGAGTCCAGGAAAGTAGGGTAAAGGGAGGGAGCAAGTAGGAAGATGAAGGGGATGTTTAAGGCAAATTATAGATCGTTCTGAAATTAGAAAAAAGTAAAGCTAGAGTCTGTTATCTCCACAGGCTTGC-TAAAGCATTAAGACAAAGCTTACAGAGTTCTAAAGGGAATTACAGC--------ATTCACCAAGGCGTATGGACTGTTAAGGTAA---TAGAAGTTCTAAAGTAGTACTGAAAAAATGACTTTCACAGTTCGTTCTGAATGTAGGCTCCACAG---AGAAATTAAGGAGCAGATAGCCTGGGAGATAAGAGGGAACCAAGGAGCTGAAGTAAGCAATGAGGTAAATAAACTCAGTGTCCAGAGAGACAGGAAAAGGGGTCAGGGACGGGGTGTGGTGGGATGCTAATGGGTGTTAGAGAGTACATCATCGGGGTTGAGGTTTTTTAACTAttatcttatgtacattggtgttttgcctacatgcatgtctgtgtgagaatgttggaacctctggaactagagttacagacagttgtgagctgccatgtgggtgctgggaattgaacccatgtcctctggaagagcggccagtgctcttaaacaaatgagccatccctccagccccCAGGGTTGAGATTCTTGAGGAGAGAGAATATGGAATAAGGATTCCCACAATGGATGCCAGTGTTTGCACGGCACTCAAGCAAACTCAAGTTATAGAACAGTGATGGGAGGACCTTGATGCAAGGCGTGCCT--------GGAGGCCATGTAGAGTGTCAGCAT---------------------TATTCACTGTCAGGTAGCCAGCTCTAAAGACGTGTGTATCATAGCACAACCTGCTCACAA--TTCTTAAACAGCATC----CAACTTGAATGCACAATGGTGCCA---------------------------------GGCAACACCTAAGAGATATGTCAGGCTTTCAGGAAATGTTATCTGGAGAATCCTTAACTGAAGATTTACTGATGGCCTAGGCACAA---------------------ATAATGAATCCATTGTCCAATCAAATAAGATCATGGGAAATACCAAACAAATCAAGTAGGTTCAAA--------------GTTATA-CAGAACAGGCAGA-------CTGACTATAGAAAATACCAAGAACTTGCTTCCAAAAATACTTCCCAAAGGAAGCAGTGATGAAGCCAACCACAGAAAGATAAACAGTTACCCTAGCAAAGGCAAGGCTAGGTGTGTGGGTGGGAACAACCGGCATAGAAAGGCCCACACATAATAATTTTAGATCAGGGTGTGTAAAGAGGCAATCACTGTATAACCAGCTCCCTAGAGCTGCTGGC---AAGGCAATTTCCATGAGGCCAA-AACCTGGA-AGAGCTCAACTAAGGCACAGAAGACTC-TTTTAAAACAACCTCAGTT-TAAATATTACATGTTGCCACTTGGCACACACAAATGCATACTTCTTTCTGTTAT-AAAGCATACAAAGACTTAGCTCAA-----AAGAAGTAGGTAAGGGAT--------GCTACACA--------------------------------TAAGTCC---------------------ATAAGCAAATGCAA------------------------------------------------------------CATTCTTCCTTTTCCTTGTAATAGGCATCCTAACACATACTATGCATAATTTTATTGTAACCCAAATCTACTTCTTAATT-ACTCGTGTCCCTA-TGTTATATTTATTACCATCTTAGAGCACAATACTAGTAGAGATTAACAACCACAATGAAGC----ACCCCACACACACACACCAAGAAGAGTAAAG-TAGGAATATCGGTACTGATTTACCTAGAGATACACCACTTTATGTTATGTTTtctctctctctctctctcccc---------------------------------------------------------------------------------------cccccccctctctctctctctctctctctctctct---------ctctctctctGTCACATGGG--------------AATTTGGATCTTGAAGAC------------ACTTAA----ACTGTAATATATCTGTCT------------------------GATATGTACAAACACAACTCACAGGAATATTCAGTGAATTTTCAAAAACTGGAAATGTTTAATGCTGCTGTTCTACTACT-GAACATCGATCATTAAAAAAAAATCCCTCAGCAGAAGATGCTTTTGTCATAGAGAAATCTGCTGGGT-ATTTATAACAGTTAAAGGTGGGAA-ATTGCA--------------------------------------------AGGCAACTC-------------GCAATGCAGCCAACCTACACTTCCAGAGCAAACGCAGATTTC--------------------CCAGG--------------CTTGGGTGCCCAGCCTTA---GTAGAAGTGG--GGTGAGTTCTCAGATCTAGAGTA----GGAAATGAT--GAAGCCATGTGTTATAATCCCACCACATGGCATGTTATAGTACATGATGGATA---CAACACATAAAA------------CAGCAAGGAGGAGAGCAGTGGGTGGC-GGGATGGGTTAACTTGAAAGGTGTCACAGAATATTAGAGTACTACACAGATG-CGGGTCGTGGTTATCATGTTAACATTCATTATGAATAACAATGA----------CTTAGCTATGAGGGCTCAGGGAAAAAAAATCACATCATATTTGTCCTGCTGACTAGAGAGCTCAGAAGATGCTATGAGGCAAAGGCAACATGGCCCCGTGTGTCTGAATGTTTTAAAATAGGATTGGATGGAGCCACCCTAGGTCATCATGAATCATGACATCTATTTTTTTATTTTGGACTTTTATTCTAACTTTAAATGTTATTTGAA-TTTTTGCCCGAGACAACACGTGAAATGTCCTGAGCCCAGTTGGGAATCTTATTTATAAGAC-AGATGGATTTCCATGCGGGTGGTGTCTTAAGGCATCCACTGAGTGA-------GTGTTCAA------------------CACAACCACAGTGAAATGAG-CTTCCAGGATGAGGAGGATGCTGGGGTGAAAAGGACTCAAGTCCTGCTTCCAAGCAAAAGCAAC--CTTCCCAGTCTTC--------CTCACCCAGCCTTT-------GTTGAAAGGCGTGGGGGCCAGCAGTGTACCCTGATCTAGTTT-------GTGGGACTAA--------------GGCAGGGAAGCAGTGACTGAGACAAAGTCCCCAAGCT-GCAGCCAAGTGCAGAGC------ATGGTTGCCAAGGCAGAGATTTTCCTTCTCAAAATACAGAAAATTAATTGCTCGCACTGATGAATATTCAACAGG-AATTCACTGTCTAAAGACATCTCAGTAATAGAGTTAGGAAAGCAAGCATTTTTCCTCCTACAAAATGCTACGTGCAAAATGC--------CAGTCGAGC-AAGACAGTGGCATCATCTAA---------CTGCCATGCATACTCATT-TGAACAGTAGAaaatcacataacctccct------ggcctcagcagccacatctgtaaaatggggGAAAGTGCCATCTCTGGCTCTCACTATCCATTTGTCAGCAGGACTCTCTAGTAGTTC-CCATGAATTCAA
s HiC_scaffold_1 107677164 3500 - 233722169 TTGTGAGGCATGTGATTTT---GGAGAGGTCCAAGGAGGAAGGGAATACAGAGGAAATAGATGAAAAGAGAA---GAATTTCCTAGCAGTATTACACATCGATCcaagattagaaaaaaatgaatctagAGTTTTCCTTCTCCATAAGGTTTCATAATGTACTAAATTGAAGCTTATAGAACCCTAAAGAATACCATAACTGACGAATGGTTACCAAGGGTTGgagactgtttaaaaaaaattagagatacCAAAGCAACGCTGAGAACGTAATTCAAACAACTGACCCTGA------GCTCAgcagggaagaaaataaagagcagaTGGCCTGGAAGATACAGAGGAGCTGAGGAATTAGAGTAAGTGATAAAGTAAG----CTGAACATTTACAAAGAAAGG-----------GGAACTGGG---------------------------------------GGGGTTGA---TTTATGACCA-----------------------------------------------AAAATTGTAATTTCAGAA---------------------------------------------------------------------------------TTAAATA----------------------------------TCTTAAGAATGGAGGATCTGGAGTAATGAT---------------CTGTGTTGACAGAATACTGAACTGAATTCAAGTTAAGGAACTGTGAAGTCAGGATATAAAAGTGACCTATGCCCATGCCTAAGGTATCGCTCTAAAATGTCAGCTCCTAAAAGGAACAGTCTGTGTATCTTCACTATCATGGATCCTGCTTTCAAGAGATCTAGatcaaaacaggaatttaatGCAAGTTTCTTAAACAATGTATAGACAATTTGAATGTATAGTGGCATCAAGGTTTGTAGCCTGATATGCCCATTTTCTAAAAGGTAACACCTAATATTCACATCAAACTTTTAGGGAATGTTATCTGGAAAATTCTTAACTGAGACTCTTCTACTTGC-TAGAAACAACATTAGATGCTAAAGATTTAGACAACAGTTTATTCTTCCAATAAACTTAGAGTGTGGGaaataccaaacaaaacaaaataaagcaaaacaactaTGTACATGCTATAACAGAATAGGCAGAGCATGTTCTGGCTACAGATA-TACCTAGAACTAG-TTCCCAAAATAATGCCCAGAGGAGGTAATGATGCGGTTAACCTCTGAAGGACAGGCGTTT--CTTAGCAAAGGCAATGCTAGGTGTGTAGGCGGGAACAACCCATAAATTAAGACCCACGCATAATAATTTTAGCTCAGGCTGAACAGGATGACTATCACTCTACAACCAGCGCCCTGGGTCTGCTGGCCTTAATGCTGCTCCCATGGTGCCAGTAACCTGAACATTTCTTAAGTATTGCACAGAGGGATCTTTTTAAAACCAATTCAGTTCTAAGCCTTTTAAACCATTCTTTAGTGAACACAAATTTAAATTTCTGCTGACTGTAAAAACATATATTGACTTAGTTTAAGAAACAggatgggggccagggatttatgtcagcggcacagtgcctgcctagcaagcacaaggtcttgagtttaattcccagtgcccccaccaaaattaaataaataaataaaaataaaaagcagaatataAATTCCATTGCCCTACCTCCATTAGCACAATAtagtatttacttatttttttctgtctttggaaTTGACATGGTAACACA---TATACATAATTTTACTGGTACTTAAATCTAATTTTAGATTAAAACTTCTCTTTATTACTATTTTGATAAACATCT-----CACAATACTAAT-GAAATTAATAGCAACACTGAAGCCTTAACCCTA------------GAGAAGGGTAAAACTTGAGATACTGCTATTGATCCACTTA-AAATATGACACTTTATAT--TGGTGTGGCTCAGTTTCCCTCTCCACGATATAAAGATTCTGGTCTTGAAAATAATGTTAAGCTGAATAAAGTATTTTTTTGAAGATGAGTATAATTCTCAGCAATTAACCATGtacttgcttttttgtttgtttgtttggcttgtttttgagacatatTCTCATtccgtagttcaggctggccccaaactcagtATGTAGTTTCAAGGccacccaggatggccttgaactcactgcagtcctcctgcctcagcctcctgagtgctgagatacagatatgtgc-----caccatacgTGGCTTTACAATGTATTTTCAAGAATTGGAAATGGTTGACATAGTTATTCTACTTCCAAAAAATCTATTATT-CAAAAGTATTCTAGAAAATAAGATGTTTTATGCATCTATATGTTTATCAATTCATTAataacagttaaaaattagaagatTACAGGTATCAGAATAGGAAATGATTAAGTACTATAATTCCATGTGACAGGCTACTCTACATCATGAATAATAATACAG----CATATTattatacagaaaataaacattttaaattatgtgaAATGAAACAACAGAAATCAATTGATTTTCTTTGTCACCAAGCTTTCTGTGTGTCAGCAGTTAGTGTTTGTTTATATCCTTTCTACCTTGGCCATGATAAGAAGACACTGGTTTCAAGT----------GTTTTCTCTAACAGACTTTGGAGAAaccaaaagataaaagtaaagtgTACGTAGCAAGCAGGAAATTATTGGAAATTAGAGACAAGTTATAGGAATGAGCATCCCAAAGTATTAAAATGCTGTTCAAATATCaggt----attattattataaaattcattACAAATAGTGTAGAACTAAAAGTCTTCAGCCATAAGTGCT--ATGAAAAATATTCAGGATGTACGTAGCTTGCTAGCCACAAAAGTCAAAAGATCCTCTTAGAAATAGACac------------tgtct---tcttttaaaatagaGCCAGAGAGAGTCACCTTGGGTC-------ATCATGACATC-----TCTCATTCTAGA-TTTTCTTCTAACTTTAAATGTGATTTGAGTTTTTTGCCAGAGACAAC-CATGGAATGTTCTAAGACCAGTTtggaattttatttataaaatgggatTACTTTCAATAGGCGTACTGTCCC-AGGCATCTACTGAATGGACAGATTGTCATCAATGCCCTCCCCAGTCACCCCTCAGCCACAGTCACAGGAGTCACCCAGGATGACCACGA---TGAGGCCCAGACAGCTT---TTCCTCTAACAGACAAAAATACCCTCTTTCTagtcttcaagtgttttaaatCTAGCCTTGGCATATAGTTGAAAGA---AAGGGTGAGAGACCCACATAGATCTGGTcttaaaggaatgaaaataaaaattaggaaagtGGAAATGAAAACACTGATTGAAGCAAATTCCCCAAGCCAACATCCAAATATAGGCCTATTTAAAAGTAGACCAG--AgagattttcctttttaagatcTGAAAAATGAATTGCCAGCAGTACCCAATATTAAACAGGAAATTCAGTAACCAAGGGTGTTTACATAATAGAATTATGGAAACAAGCA-TTTTCCTAATACAAAATGCTATTTGCAAAACACTAGCATCACAGTATAGCAAAGATACTGATACTATCCAAACCTTAGTTCACTAATGCATACTGATTGTGGGCACCACCAAATCACATAAGCTCCCTTCATGCAGCTTCAGCAAccgcatctgtaaaatggggcaaaATGCCATCGCTAGCTGGAACTGT--ATGTATGAACAGGACTTTCAACCAACTCACTatgaattcaa

a score=43139
s chr3            97866429 3798 + 160039680 GATTACCATTGTTTTTTATGGTGTGAGAA-TGCTGGTAGACAG-AACAGTCCCTGA----TACCCTCAAGCTTCccccagcaggcactcacctagcctctgctcgaatacaaccagggacagtaatctccctggagc--aggtaggtcagtgttcaaagggagcttcc--tgcagtggggccataccttgcctctc-tgagacttg---ctgcatcagtcagttgctctgtcctattaggagattctaaactcagctaatccccctaccaccaactgctcttcagatctctgaatagtgctggcatgccctccctgtctccagacttaagagcc----ccaggtcccttggccaaccctcaaagcatggctttgagccccACCCTGTCTCTTGACTGCACTTAAAAAAAAAAAAAATCATGTGAAACCCCAAACA--GCACAGTTCCCTAGTAGA------------AAAAACGA----------AAAAGGAGGGTTGACCCTTC-ACATGGACAAAGTCCACTTCCTCCGGCAGTGTGTGCGCCCTGTGTGTAGTGTGTCCTTTCTTTAAAATTCACAGTGAACTGTTCACTTGGTTGAACTTAACAATCAACAGCGAACCCCCA--TTTTTTGCATAATTATTGTAGAATCCCAATTCACTTTCTATGTTAGTAGTCTCCACTGCCTTGTGAGTCAGAACAGTCACTTGTCTACACTTCCGTTCCCCAAAGCTAAATTCTGGGGATG-ATGAGCATCTAT-------------CTGGGATACAGTCTTCTCACACCCAGAGACTAcccccccccgggcggggggggTGAGGGAGGAGAGAGAGAGGAAATCTTTGTCTTAACAAAGGGTCTCTAATCCTTGCCAGTCCGTGAAGGAGCTCCCCTTTAAAGAATATTTTTAGGGAATGGTGGGATGGAGGGCGAAGGAACAGAATTCTGCCGTCACCTCCACAACACAGCCTATCCCAGACCCGCCCTGGC-CTCGCCATGGGCAGTGGAGGGTGTTCGGAGCCCTTTCCTTCCCTTTC-CACGGTGAGCTCAGAGCCAAGACTCAAGGAGATGAGCGTTACTGGCCTCTGTTGG---------TTGCTGGCATGTCGCTAGGGCAGGATAAGGTTGAGGTGGAAAACGTGGCAGGGTGAGAAAGAACCAGACACACTAAAAAGTATCAGAAACTAAAGGTATCCC-----------CTGGAGGGAGTCTCTCCAACCTCTTGGAAAAGAAGCTCACAAATCAGGAAAAGACAGGAGGACACATGGCAACAGGAAAAACTTCCAGGCAACCCCG--GGGCGGTTTTGACGTCAGGAGTAAGTGAAAAGGAGA------GAGCTGGGGACACGCTGAAGAGTAGAGCGCCTGTGGGAGG-CTAGGAGAGGTGGGCTGGGAACCAGGAAGACGACAGGACAGAAAAGGGAAGAAGAGCTCCGAGGCCTCTAGTGGTGAGGGGCGACC---------GGGGGTTGGGGGAGGGAATAGGGC-----AGGAACCCCAAGTCTACAG-------GCGGCAATGGAGAAGCCGCTC---CCTACCTGGCCCAGGTCTGCTCCATGATCCAAGCGCTCTCCTCAGTCTCGGGGTGCCGGTCACCCCGGGGTGGCCGCAGCCCGGGAAGATGCCAAGCCTTGCCCAGGAGTCTCCAGCGCAAAAAGCCCGAGTCTCTTCGTCCTCCCCAGCTCCTCTTGGCGCCGGTGCCGGGTGAAGGAACAAGGTCCGCTCTCTGCTTTTTGAAGAGAGCGAGTCGATCGGCCTCAGCCGCACCCTAAGCTAACGGTGCTCTGGGTACAAGGCAGGGACTGTTCTCGGGAGGTGGCTGGACGCCGCTGCCGCCGAGCCCAGGCCGCGGGCGCACACGCTCCCAGGCTGAGACGCGACTGGCTGGCACGAGCTGATCCGCACCAGCTGAGCTGTCAACCGCGAGGGAGCAGAGGCGGGGCTCCGCGCAGCCCGGGACCCGCCCAGGTGACACGCCGCCGCGGCACACACCCTCCGGCTCCCACAGCCTCCTTAGAAGGCTCGAAGGACTGATGCACTAAAGGTGACCATCGATGACCCTTGTCAGACTCTCAGTTCCTCACTGATTCCAATGAAGAGATTTGGATAAAAGCAACCAACAGCAGGGAGCACCTTGGAAAGGTGATCCTCCCTTAGC-CTACATCGCCCACCCACACGTAGCCTCCGAGTCAGAGATGGAGTCTAAGAAGGATGCAAACCTGAATGTAGGTTGTGCTTCCTAGGGAAGTCACAGGGCACAAGGTGATTCTCTGAGAGAGGAGACCTGTTAGTTTCACCATTAATCCACGGACAAAAACTTCTTCTTTTTCTTTCTTTCTTTTTTtttttttttttttagacagggtttctctgtgtagtcgtagctgtcctggaactcactctgtagaccaggctggccttgaactcagaaatctgcctgcctctgtctcccaagtgctgggattaaaggtttgcgccaccaccgcccagcAGGGTGTAGCCTTCTTAACCAAACCTTGTAGGCTGATTAGCTGTCCCTATCTCAATCAGCCCCTGGTTTAGCTTCTTTCCCTTGTAGTTCCCACAGCAACCGGG----CTCTACCAGAAGCTCCAAGGAGGCAAAGCATTCCTGAACATCCCAGAATGCTCCAAACGCCTTAAAGAGACCTAAGAGCCCAGGAGGTGAACTCTCCAACTGTGGCTCTTCTGAGAGCACAGAGAAAGCCTTTCCTTCCAAGGAGGGGGCTGCCCAGACCCTGTACATCTACTTATGTACAATGTTTAAACAAGACAGACATGCTGTAATTAGAGGGCTCACCTCCCGGGGCTCCCTTTTAGCTCTGAAAT-AAACCTTTTTATTTAGTCACATGATCACTGTTATCATTAGCTTTACCGCTGGCCTTCTCatttaaaaaaaaaaaaaaaaaaGCTATATATTACAAGTGCCTATATTTGGTGGCGATAATTTTGTTAGATTTGTTTGAAGACGGCATATTTGTTTGAGAACAAGAAGGCTC---GATTCAGCCCAGGCTGTGATGAGGCCAGT---------GGCATGGCCCAAAGAGC--TATGTTCTCCAAATTTTTAAAGACA-GACCAACAAGGCTTCTTCAGAAGGAATCCATTCGCTCCGG-CAGCCT--TAGTTAGACTCAGGAAGAGACCTGGCATGCCTGAATGCTAGAGGAACAACAACGAGCCTGAACTGCGGCAGGAACTTGTCAGCT--ACATCAGTTTCTTGG--ATTAGTTCTGATCTTCAGTAGGAAACCCAGGAGGGACGGACAGCATAAC-AAACAC-----------CGAGGCTTTAGAGGAGTCGTTTGAAAAAGACCTAGACTAGAATCTCCCAAGAGCAGCGCTTAGTTTATAGCTAAAACCACTCTTGAGATTAAAATTATGCCCCGCCCCCGCCCCTGTCCCCAACTTGCACCCTTGATGTTCATTTAAAATATTACCAGGAAAGGACAAAACTAAGGTCCAGTTTGACACTGGCCAAGACCCACAAGCCACCTGTCTTGAAAAGAATCCACTGTGGCCT-TGGGGGAGGGACAGAAAGC------------TCAGGTTTCCATCCCTCATACCGAAGTTGATGCTATATTTAGTTGTGTCTGAAATCAAATTATGGGCTGTTGAGTTGTGGAGAGAGATTCTGTCTACAGTC-------AGACGT--GCTCCAGAAGAGATATGAGCTAACTAGGTGACTGTG---------GCCTCTCAGAAGCATGGCT--GAAAAACAGGCTTTAAAAACA-----AAACAAAACAAAAAAC-----------------TCTGTTG-------TTCAAAAGTTTATAATAATAAGTTAATAATTGAAGGTCATTCAGAAATTACAGAAAATTATGTAGAAAATAAAATAATTCTTAAAATCTAGTAATAATTGGTGTTTAAAGC
s HiC_scaffold_1 107684348 3305 - 233722169 gattac--tttttttttaagttgtgaAAAATATTGATGGAGAGCAAGAATCCCGGAGGCTCACTCTCA-----TTACCGTCAAGTGGCCATGTGGCTTTCCCTTCAGTAACTCCAGGATCACAAATTTCTTTACTATTGAAGTAGCTCACTATTTAGAAAGCTCTTCCCCTTCACTAAG-CCAAAACTTGCCTCCCACAATCCCTGAACCTACTCCTATCAGTCCTTTGGTTCCCCTAAGAGATGCTAAATT-GTCTCATCCTTCCGCCACCAACTCCTCTTCAGGTCTTTGAAGAGCGATTCCCCTCTCCCATGTTCTCCAAACCGAAGGATCTTCTCCAGGTTCTCTGGCCAGGATCAAGGGCATAGCTTTGAGTCTC--CCTGTCTCTCGATGGTGTTTTTCAA---------TCGAGTGATTCCCTGAACACAGCCCAGTCCTCTAGAAGAGGAGAGGCCTGCAAAGAGGAGCAAAGGGCCAAAAGTAGGGGCAACACTCAGAAATCTCCAAAGTACATTGCCTCTGCCAACATGC---CACAGGCTTCACTAGGCCCTGACTTTAAA-TTCACGCTAAACTGTTCACACTGTGAAGCTGAACAACCAACAAAAATGGCCCAAGTCTTTTGTATAAGAAGTGTTAAACCCTAAATTTAATTCTGTGTGGA-----------GTCTTGGGAGACAGAACACTCTTTTGGCCTCACC-CAGTTCTGCAAGGCTAAATCCTGGAGGTGCAAGAGTAGCTATTATGGCAACAGCCCTGGAATACAGCCTCCCCACCCACA-------CTCCTCCTC---------------------AAACCAAAATTAAGTCTTTCTCTTA---------------------CCGGCCCTGAAAGGAGCCTTGTTTTAGAGTGTATTTC-AGGGAA----GGAATGGGGATGGAAAAATCAGCAT----CAAGCATCTCCAAAAT-----CTGCCCCAAGGACAGAATGTCACTCAGCCTGGG-AGTGGGAAACTCTGATCTCCTTCTCCTTGTCTCTCTCAAGGCTACTCCACTGG-AACACTCT-GGAGGTGAGTGTCGCTGGGGTCTGCTCACCCAGTCTTTCGCCTTTGTGTAACTAGGAGAGGGTGAGGTCAAGGAGGAGAACGTGGCAGGGGGAGAATAAATCTGATGTTGCTCAAAGTAACAGAAATCAAAGGTGCCTCTAAGGAAAGACCTACAAGGA-TCCCTCTAGTTTATAGAAAGGAGAACCCCAACACTAGGAAACGACACTGACATTTCTATCAA-------AACTTCCAGACGGCCTCATCGGGTATTTTTAACATCCAGAGTAGGTGTAAGGAAGATTCACTAAGCAAGAGAAGCACCAGAGAACAGAACGCGTGCAGGAGGACGGGGACAGGTGGGC-----ACCGAGGAGAC---AGACCCGAAAA---CAGAAGCGGTCAGAGGCCCCTGGTGTTGAGGGGCGACCTCTTCCTCAGGGCACTGGGGGCAGGA---GGGCGTGAGAGGAACCCCGAGTCCGGAACGGGGACGCAGAGAGCGAAAAGCAGCTCACACCTACCTCGCCCACGGCCGCTCCATTTTCCGGGCGCTTGCCTCACTCTCGGGGCGCCCCTCTCCCAGGAGTGGAAGCCTCCTGGGAAAACGAGGCTCCTTCGCCCCGAGTCTCCAGTGCAGAAagccccagctcct--------------tcctcccaGCTCCGGCGACAGG---------------------------------GAAAGCGGGG-----AGCCTCGGCC------------------------GGCACAGGGGA-GACCTGTCCTC--------------CGC-----------------GGCAGCGGG-----GCGCGCCCAGGCTGAGACCCCACCGGCTGGCCCGGGT---CTCGC-CCGGCTGGGCTGTC-ACCGCGGCGGGGC-GGGACAGGGCAGGGCG-------------GCACAGGAGACGCGCAGCGGGAGAGCACGCCCCGC-GCTCCGGCTGC-------------------------------AAAGGAG-------------------------TCGGCTGC------------------------GGAGTGAGCCGGCCCACTGGGGGA------CTGCAGGGGGAACCCTCCCGCAGCTCTGCAGCGCCCACCC-CAGGTTACCT-------------------------GGCTGAACGCTCGA----------CGCTCC------------CGGGACCCAA--TTATTTTCCTAGCGACGTGACACGTTA-TTTCTGCATTAATCT---GGCAA-----------------------------TGTTGCACATTCCTAGGAGGGG-----AGGCGTGCTCATAAA-ATCTTG-----CACCCCTTA----AGAACTGTCTCCATCTCAGA-------CCACCCCCCTCTTCCCCGCCCCGGATCTCATGGTTT---------------------------------------------------------------TCCATCTC------------------CTTCCTTCCC----AGTTTCCACAGCAACCGGGCTCTCTCTACCAGAAGC-CCGAGGAG-------------GAACTTAGAAGAACACTCGAAAGCTTTCAATCAGAACT-----CGTAAGACCTGGACTGT-CGCCTGTGACTGTACTAAAGTCATAGAAAAGGCCCTTC-------AGAGATGGCACCCCATGC------CACCTACTTAGGTAT----------CAAGTTAGGCACTCCATAATTAGAGTGCTTACCACCTGAAACTCTTCCTTAGCTCTGAACTGAAACCTTTTTATGCAGTGACCTAATCTCTGTCATTATTAGCATTGCCACtgacctttttttt------aaatttgcaaaagGC------TTTCCAGTGCCTTTTTCTG--GGCAAGA----TGCTAA-----------------------GTTTAGAACCCAGAAGGCTCAGAGATTTTGCTGAGGCTCAGATGTAGGCTCTCTTCCGCAAGGCAGGATCCCAGAGGTAGGAGGTTCTCTGCAGTTCCAAAGAAATGACCCTCCAGGCTTCTCCAGGGTGAGCCTATTCTCTCCAGTCAGGCTGGGAGTTTGACTCAGGAGAGTCTCGGGCAATCCAGGGCACGGGTGAGACTGTGGGGA-TCTGGATTACTGGGGCAAACTGCCATCTTACTACCCACTTCTTGGGTATTACCTCTAAT-TACTGTTCAAAATAGCAGTGGGTAAGATAGGAGAACAAAACACATCCAAGCATTTGAAGGTTTAAAGGAGCTACCTAGAAGGTTCCTAGTCTAGAATCCTCTA-----------------------------ATTCCAAGAAGTAAATTTATATCT---------------------------------------------AAGGTTAACAAGAAA----AACTTTAAGGTTCCATCTGCCCTGAGACAAGGCTCACAGGCCACCTGTCTTGAAAAGAATGTCCTTTTgcttctaaaggaaaaaaaaaaaaaaaaagacaagagtcaGATTTCTGTCCTTCATACCAAAGTTGTTGCTATATTTAGTGGTGTCT-CAATCAAATTATGGACTATAAAATTGTGGAAGGGAA--CTGTCTACAGTCTACATCTAGACATAAATTGCATTCAAGAAATGATAGTACTATGGAACTCTGAGAAgtgaagctttttaaaataactttttaaaaaaactgtcttCAAGAACATTTGGTAAAAATACAGAAAGTTATAGAAACTAATGTTGTTTGTTGAGTTCTTTTCTGGAGccttaaaaatgtatcttttaatcCAAATtca---aaaaagtaca------tttttaaggaaaaaattagttttttaagTAAAGTTATACTTATTGTCAAAAAC

a score=20006
s chr3            97872344 1182 + 160039680 TGCTGCTCTTCCCTTAGCTTA--GCTCTTGATT-GGTCAGCTGATT------------------GAGCTGGTTGTAAGG----------------------CTGTCCAATCATTTCCAAGCATC-CATTGGTTCCATTCATTTTTTTT---TTTTAA-------CCCTGCCTTTCTTCCCCT------------TGTGTAAACAGTACTAATGATTTTGAAGTGGTTGTCTGTGTGGCTT--AAGTATAAAAATAAAATATCTCTGTCTAACATATTGGATCAGATTTTCTTCTAAACTATTTTCT---CTTACGGATacaaaaactttataggtaggctctatttatctttattttataaata-ttaatgtggagtatggggag---aaatat--tacctaa--tcacaaagtt---------catagttgagatttcagaccccttggtttagctccagagtGTCATACCTGCCCATTGTGTGTAGCATGTCC-TGACTTCGACACCTAATGTCCTCTGCACACTTAGATAGGAGGACA-TTATAGGTTACTTACCCGTCACTTCACTGATCGCTGTGGTTCATTCCCCTGGCTTGGTTAGTCAACAGGTATCTTCCTGGTCCCTCACAGGGCCATGGCCATGCCCTAACTTTGTGTTAAAATAAA-----------------TATCCTTTCTGGATTGAGTAAATC-----------------AACCACAGTTTCTTGTCTACTTTTCCCAGTCAGAGGGAGACTATAGTATTTCACTCTTTAACCTATATTGGCTTCAGGAACTTATTTGACTAGTAGAAACCTGCTAA---GATATATAACCATC------AGGTCAAT-------------AGAAGCTTCTAT---------------------------------------GGTAAGAAATTA---------AACCGGGG------TCCTAGACAAGCAATGTGGCAAGGCCCTAAGACTATGAACAGAAC---AGAGGCTTAGTGGAGCA----GACCAGCAGCTCCCATTGCAA-------------------------TGCTATGAGTTGAATAAAACCCAAAGAATCCTCTATGTGGCTATGATAGGGGTACACCTGTCCTGCTGAAACACACCAGAACTATCGATCCCCTAAACCACGCTATAAGAAAACACTTACTGTGTTAACCCTATACATTAGAGAATAGTTTGCTAAACAACAACAACGAACAGTTGGAACTAAACTTGATACCTGGAAGTGAGA---AGTTATAACTG----------------GGCAGTGACTATAGTATACAGATATGGCAGGCACCATACAGTTGT---GACAGGTGCCAGC--AGCCCTCTGGGGAAGGACCTTGAGGAGGCTGATGGAGAGCC---AAAGGACACTGAAGAAACTATT
s HiC_scaffold_1 107689842 1410 - 233722169 TGTTGTTCTTTCCTGAATGTACTATCCTTGATTTGGTCAACTGATTATACATTGCAAAATACATGAACTGAttataagaacaaaaaataagatgTCAGCATCTGATTATTCAGCTCAAAATATCTCAGTGgtacttttcccttcctttactttttaaaaaatttctcttcctttttttctctcaaacttGATTCTGAGTAATCAGGACT--TGCTCTAGATAAGGATCACTGCATGACTTCTAAGGCAATAATAAAAGTGTCCACATATAACACAATTTTATAGATCCTTTTTTAGAATGATTTTTATCCTCACAGT-----AATCTTGTTACACTGACTTTAGTTATTTCTATTGCAAAAATAATGAATGTGGAACACATGGAGGTAAAATATAATACTTAACTTCATAAAACTGATAGATGGCAAAGCTGAGGTTTGAAACCAATCAGCTTAGTTCCAGAATGTCATTTGTTATCATTATGCATACTGTTTCCCTAGCCTGAACACTTAACATTCTCTTCATACTCAGCCAGGAAGACAATTATGTCTCCATTATCTGCC-CTTCACTGATCACTGAAGTTTATTCAGTTGACCTGGTTAGTCAGCTGGTGTTTTCTTGGTCCCTGACA---------CTTCTCGCCAAcactgggttaaaaaaaaaaaatctgacagagAAGAATCATTTTGAGGTCAAGGATACCATGTCTGTGGTAAAGATAATCACAATTTCTTGGCTACTTTTCCCATTAAGAGATAGAATTTAACTGTTCTCTCTTTCATTCATGCTGCCCTAGAGTATTTACTTGACCAATAGAATACAGCTGAAGCAATGTTTAACTGCCAAGCCTAGGTCATTGTTAAAGGAGCTGGGCAACTTCTGTTTGAGACTCTTGGAATTCTGCTGAAACCCTGAGCTTTCAGATAAGAAGCCAAATACCCTCAACAAGAGAAACACTGCTAGATAAACATTGTGGAGAGACCCTGAGATTACACAGAGAGAATGAGAGGCTTAGTTGAGTCCAATGTCAAGCAGTCTCCAGTGAGACACCAGGCCCATCTTTCAAGCAGTCTTCTATCTGCTGGACAAAACT--GAGCAGCCTAAGAGTGACCATGACA-GAGTACATCTTCCCTGCTAAACCGTGCTAGGATTTTGACTTCCTTCTATcatgatataataaaatatttgttatgttAA------GTGCTAAATTATGCATAGTTCATAATTAGTAATAGATCATTGGAACCAAATTTGTTACCTGGGAGTGGGGTATTGctataataaaaattctaaagcaaATAGCAATGATTTTGATACCTGGATGCCACAGAAGTTGGAAAGGTCTCTAGAAAAGTGTTAGTGAAGGCT-----GGAAAGACATTCAAGAGGCTGCTGCAGAGACTGTAAAGGACAgtgaagaaaatatt

a score=30049
s chr3            97876199 1545 + 160039680 ATTTCTCCCCAGGCCTAGGCCAGTGACCCCGAATTTCCATTTATCAGTTTCCTGCCTTATCATAAGA--CCAAGTTCTGA-----------AATTGAGAGG---------------------------AAGA----AGAAGT------------------TTCCCTAATTTCCTTCTCCC-------------TGTGTTTAGGAgtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtgtgtATTCAGAA--------------------CCCCAAC-CCTCCGTTGGCCCGCCTTATCTGTCAGCTGTAACAAAAACCTCAAAGAAGGAAATTATGAGCAAGGCTTCAGACAGCTGGCGGTAATT-----TATGCCCCATCCCAGCCTTTCAACGCCGCTGTTTATATGCATCCGATGTTGGGGGAGGGGAAACCGTGCAATAAACGTGGCATGTCAGTTTCTCAGAGGGACTTTGGAGCAGTAAGAAAAGACCTGTGTGAATTTTCTGTGTCATTCTCCTTATGTTGAGCATACAAAATAAGCCTTA-AAAATTGCGCAGACCCAGGCCGATATTATGGTCAATAAATACATTTCTGGAA------ACAATGCTGACATAAATTCCTAAGAAGCTTCCAAGCATTCTTGACAAGC-CACCATCACTAAAACCAGAGTCACTCTGGGATGT--GGCAAGCTGT-----TCTAGCACCAGATCGC------CAACCAGTCCAGGATGGCTT---------------------------------------------------------------------------GTGTGTGAG--------CCATAAGGAGAG-------------GAAGTGTGTGGA--------------ACGGCA----AAACTTGGTTTAAATCT---------AAGACTGGAGTT---------------------------------------------------------TTGAATTATGAAAAAGTTTGCTAAGAACAATATAACTATGTCCATCCACGGTCCTTACCTTT-----GAATATAGCCATCTACTACCTTACCCCTGAGTACAGGTAGATAGATgagagagagagagaaagagagagaTACATACATACACACATATAACCT--ATCTTTGTTTTTTGAACATATTT-----------------------------------------------------------------------------------------------CCAC-------TCATAATTGTT----------------------------------------TCTCTTCTTGTGA------------------GAAGAGCTACAAAACAGCACAATAAAGTTTTACAAATCTCCTACTTGATTCATCATTCATTAACTGTTCTCCACAATTTTTCCTCTCTCCT---------CACACACATATACAATTATTGCTGCCATCCAAGTGAATCACTGAA-AGTATAATGTGAATTTCTCACTACTAAAGATTTTAGTAT---TTCCTAAGACTAATTAAAATTATTAAATATCTGTGATTGCACCTCGTCCTGTCAGGCCAGCTTTTGTCCCTGTTAAACAGAAAACTTTGCTC----ATCTGAAGTCCCTGAAGCCAAGTTCTTGACATCTAACTACCCATAGCCACCCC-TAACTGGTACTTGGCTCACATCTGCACAATCAAGAGGGCTCATCAAG-TAGTCACTGCTAAGACAAAGACAAAGCCCTGACAAAGACAAATTT------------------CCCCTGGAAGGCAGCTTCTTGGCAGTTTAAAACAGTGGGGTTCCCCCTTCTTTCAGCTGGCAGGGGTTCAAAAACATCAAGTAA----------------------------------GTTCTAATGAGAA--------CTCACTCCCTGCATGCAGTTT--CCCCCGTTTTCATGTGAGCCC-----------CAATACT-ATTTATTGTGTTCTATAGCAAGCTTCTGGCAATTCTAACCAAAAGACAAATAGACCTCTAACACTCATTTATCCT
s HiC_scaffold_1 107701120 2068 - 233722169 ACTTCTCTCGAGGGCTGGACCACTAACccagattttctatttttctgcttcctTATTTATCATAAAGATCAAAGATCTGACAAGGAATTTAAATTAATGGGTTTTCTCACTGGCTGGCTAGAGCTCTAAAGACCAGAAAAGTGCATACTTTCTCCCTTTATTTCCCAAATTTCTTCTCATGCCTttctggatgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagagagagacagaaaaaaaaaccttatttcCTTCCTTAGCTAGCCTTCTCCATCAGCTGTaacaaaaaaccacaagaa----attaTGCCCAAGCCTTCAGACAGCTGGAGGTAATTACTCACATGATCTCCCTTATCCTTTCAACACCACTATTTATGTGCATCTGATGTGGGGGGAAGGgaaatcatttgagaaatgt---atgcAAATTTCTCAGAAGGCAGTTGGAACGATGAGGAAAGACTTGTGTGAATCATCTGAATAAATCTCCTTGTTTTGAACATAGATACCAGTTCTTACAAAGTTGAACAGA---AGACTGATGTTGGggtcaataaataaatttttggaaCTACAGAcaatacagaaataaattcataaatacatTCCAAGCATTGTTGACAATCATAGCATCATTAAAACCTGAGTCTCTTTCCAGTTCTGAGCAAGTGGTGCCCATCCAAGCCCAAAGAGCAAATATCAGTCAGCCCAGAAGGGCTTAAAAATCTGTTAGGATGATAACAAAATGGAATGCATTGGCTggatttttaattacaaaaatattgGATTAGCCAGGCATTTGAGTCGCAGGCCCATAAACATAGCTttctggaggctgaagtaggaggattacaaattcaagcacagcatggacaacttagtgaaaccctgacttAAAGAAGACTGTAGTTCACTGCCAAGCACCTGGGGTCAATATGCAGAATATATAcgtatatgtatttttaaaattaaatttagaaaaatattgccAAGAACGATAG--------CCA--CATGATCCCTGCCTTTTTCTTGTATCATATTATCTACTAGCTTATATTTGAAGATAGATTAATAggtgatatagatagataga-------atatatatatatgaa-acttaaccttcatttttattttttaaattaatttatttatgtttggtgggagggtctcactctgtggtctaggctggccttgagctcactatgtagcctaagctggccccAAAAGTAATGACAGtccccccacctcagcctcctgagtgctaggattgtgccaccatacccgacaacacagatttttaaaatcttttcctttgaaataaaatttcaaacctagaaaagtttcaaaatagcGCAATA--GTCATGAAAATGCTTCCTTTGATTCAGGAATTGTTAACACTGTGTCACATTTGTTTTCTGCAtatacacaagcacacacacacacacaattattgctgttattttgatGAGCCATTGGAGAGTCAGATGCAGATTCTTTGTCCCAAAATACTTCAGTTTGTATCTccaagaataattaaaat-attaaatagtaatGGCTGTGACCAA--CTCCCACAACAACTTTTATGACTATTAAGCAGAAAGCTTTGCACCATAATCTAAAGTACCTGCTGTCAATTGTTCAACCAC-----ATCAGCAGCTACACCGTTATCAATGCTTGGCTCACATCTGTGTAACCAAGAGGGCTCATCAAAACAAACCCTCCTAGAACAAGGAAAAATAGACAGTGAAGGCAGATTCTGTCTTTTGCAGTTAAAACTACTGGAAGCCAGTTTCTTGGCAGCCTAGAACAGCAGTTTTGTCCTTTCTTCCAGCAGGCAAGGGCTCAAAAATATTGAGAAACAGTCTCTAAAAGCCTCACCACAACCAAGAAAACATTTCAATGAGGAAACAAAGTCTCACATTGTATATTCAGTTTTGCTTTCGTTTTTGTTTTAGtctgtaagaaacaaaaatactaagTTTTTGAGTTGGGTAACAAACAACTGGCAGTTCTAGACAAAAGATGATCAAAACT-GAACAGACTTTCATCCT

a score=16845
s chr3            97881726 941 + 160039680 ATGCTGAAAATAGGATGCTGTTTCTGCTTGTTCACCGGG----------TACCGTCTCCATGCCAACATT-CCTCCTCACTTTCTGGGA-GCTGCTGTAGGGAACTGGATGTGCAGTGGATGAGGACACACAGTGGGCAAACTTCTGAACATGTGTGCCTATTATTC--------------------------TGTTTTGTGGTTTCTTTGTGGTTTGAGCAGTATCCCAGATTCCCCTTTGAGATTTGCAGTTCACTCTTTTTTTATTAACCTAAATATGGTGTACCCTGACGCTTTTTTTTTTttttttttttccgagacagggtttctctgt-gtagccttggctgtcctggaactcactctgtagaccaggctggcctcgaactcagagatccacctgcctctgcctcccaagtgctgggattaaaggcatgcgccaccatgcccggcCTGACACTTTTTGATATAGTCTCAGTCATTCGTCTCTCTGTGATGACCTTCATGGGTTTTACCGTATGAATGAGAAAGTACGTCCTCACAAGGTCAGACTC-TGTAAAGCAGTTTATTATCTTAAAGCAAGTGGGCTATTTAAATGT--GTGCTGAGTTGGGGACCAGGTCATTTTTTTCTAA-TTCTAGCAAAGGACT-----TTACATTTGACTTTTATTGACTCATAGTTCTGTTTAGAGTTATTTTTTAAAGGAAATATAGCCTTCTTGGCATCACAAAGGAAGAGCTTTTAAACAT-----AGACAAATGAAAACAATTGCTCTACCGTGCATGACACAGATATTTAGCACCTGCTCCTTAGGCTTGCAGtctgctactttacagctgcgtggccttgtcaaactgcttaactttttaaatgcagttggggataataattaatatcattcttgcagggtcataatgaggattgaatgct---------------tatttaaaaacgcatagagcccggcatatagcatgtgttc-acaaacact-------gtttatAGT
s HiC_scaffold_1 107713145 867 - 233722169 ATGCTAAAATTAG--TGTTGTTTCTTTCAGTGCACTGGGGTGATTTGATTATATTGTCATTTCTCgcattgtttcttctttctctgagaTAGTGGTGTAAGG--TTAGATATGGGTTGAGTGAACATACACACTGGGAAAAACTCTGAGGGCATGTGCCTATTGTGCCATGTGCCTGTGCCAGTGAACCAGATTGCTTTAAG---TCTTTGTTACTTGAACTGCGTCCCAGATTCTCCTTTGAAATGTGCAGTTCAC-CCATTTTTATTAACCTGATTACAGAGTTCTCTGATGCTTTTTT------------------GATAA---TTCTCGGTCATATCC-------------------------------------------------AGGTacactt---------------------------------------------------------ctttttgttttaaac-aggtCATGCATTTCTCTGTACTGACTTTCGGGAGCCTTGTCATATAAATTAGATAGCAAGTACTC-CAAGGTCTAATTTAAACAATGTGACTTACTATTTTAAAACAGATGA--CATTTCACTCTTAATACTAATTTGAAGACCAGACCATTTTTAGCCAAGTTCTAGCAAAGGATTTTGAGTtatagtttgttttgatttgcttatagctctgttttgatttattttt--aaggaaaaacaagCTTGGTGTCTttgcaa--gaaaatgttttaaagatgtGCCAAGTGAGTAAAAATTATTACACTCATGAACATGAAACAGAAATTGAGCACTTACAAATTAAATACAACCTATACTACTGTACAATTGCATGACCTTCTCAAACTACTTAACCTCTC-TATACAATTCAGGACAA-AAATAGCATCTTTCTCACAGGACtataataaagattaaatgatATTATCCTTCTAAAGTGTTTAA----GCTTAGA-TCTGATACATATcatgtgctcaataaatactaaTGCAAATTTATAGT

a score=22453
s chr3            97899491 1967 + 160039680 acaTTCTATGCTTTGCTCTCTCTGTTCCCCGGACCCACATGGTGTAGCCTTATTGCCAATATTTATGCCATTATCCCCTATTACTAAAATTATTCTATCGGA---TCAAGGACAATCATTTGAGATCATGGTAGAAGA----CATATCTTTGTTGAGTGGAAGAAAG--AAGTTAAAGATCGTGGTATCTGTAGACTATTCTAAATGTATTATGATTCTACCAAATAAGGCATTATACACTCCAAAATTGATTTCCACTCCAC------ATTGGCTCAGGTTGCCAAATGACA-------------GGTGTGAgctgtggcaagcaagggaggatgtgattgtaaatacaaggccag-cataggtgagttctag-gccaaccagagctgcatagcaagacactgtctGGAGGGGGGAATTATATATGAAAGAGGAGAGATAATATGAGAGAATGCTTATTA-ATCAGTAGCTAGAGCTGAACTTGAGCTCAAAGCCTGTTTACATCACTTCTAACTACATGACCTGCTTGGAAAAATCTTTGCAG-----TCTTCCCCAAGTATAAAGTGAGAGCCTTCAGCTAACAAATTTCACAGAGTTGTTTAGTTAAATGTTCAGATAATCATAAGACACTAAGTATTT---------------------------AGCAA---AGAATAGTTATTACTAATGTAA-------TAAGTATATTTGTATAATTCctttctttctttcttcctttctttctctctctctctctctctctctctctctctctctctctctctccctccctccctccctccctTCCTTCCTTCCTTCCTTTTCTAagtttacaaaacccctgtacctccacgttcttctcatttaatatttacaaaaaccctcttgaggccaagaatatccctatctcattgatgaggacaccaaagaagagagagatGAGAACTCTTCCTTAACGGTGATTATCTAGAGGTTGCTTCAAAAGCAAGTGAAAACCAAATTACTGGAAAGCCTGGTAAGATTCCCCT-TTCTATACCATGATAGAGGCAGCCAAGAACCTAGATTTGGGGAGGCTAA------TGATGTA--TGTGATCCCCCTGTACTTCTTCATTTATTAatatatgcatatatatacatatatatatgaataaatatatataATACTA--AATATTGCTGATCTCtttttaaaagtttcatgtgtgggggtggcttacttccgctcctgcctgtgcagcacgtgcatggaaaggttggagaggccagaagaaggtgtcaga---ttcccctggaactggagttactgatggttgtaaaccagcatgcgggtgctgagttgaactccggtcctctgaaagaacagccagagttcttgatccctggggcggtctctccagctccTATTTGCCAATCTCTTACCACAAACT--GTTTAAGAACTTTGTGACAGTATAAACACCCAGGCCAGAAAAACCCTCAAGAAACGAATCTCTGCTGAGACA---TACACAGATTATAAAATATTATACATAAAATGCTCTGTAAAAAAAATCTGAAAATACATAGCTTTACAGTTGCTTCATACTCCATTCGTCTAAAAAGTTCGCTCTCAGTCACCTTTCAAGCCCTACTAAGCTTGAGCGCCACTCCTCTTGCAGAGACACCACTTAGTGGAAA-CAAAAATTCACAAATGTGGGCGGGACTTGG-----TCGGA-----GGAATGACTGCGGAACTAAAGTTCCCGGTGGTTGTGGTTCTCGGTGGGAAGCCAATTGAAAGGACCGGTAGTGGAAAGCTCTGAAGTCGTTTCCGGCCACCTCAGCGGGAAGCGGAGACGCCAGCGGCTAGCTGTTGGGGACCTCAGCCGGAGGTGTAACTGGCC-GCCGCCGGAGAAGAAGGGA-------------CAGTGACTGAGGCGGCCTGGTCTCCGTAGCCAGGGAAGATGGTGCTGCTGACGATGATCGCCCGTGTGGCGGACGGCCTTCCGCTGGCCGCCTCGATGCAGGAGGACGAGCAGGTAAGCTGCTGCCGGAGCCCCGAGCTCGCCCTGCTCCC
s HiC_scaffold_1 107751130 1637 - 233722169 ACCTACTACATTTTTCCCTCTCCATGTCTCTGACCCAAATGGC--AGCCTCCTTAA-------------AGTACTTCCCACTA-TGGAATTATCCTGGCAGAGGCTGGATGGCCATTATTTGAGGCTGTGGTAGAAGAAAGGCATATCCCtc---aatggaaggaaggaaaatgagaaaacgtTCAATCCACAGGCTATTCTAAATATGCTATGATTCTACGAACTTAGTC-TCCCATGTACAAAAATAACTTTCCATTACACTTCCTTATTGTCTCTG-----TAAATAGCACCTTTAGTTTTTCTGTCTTATCTATTGCAAT------------TCATCTTCCATGTAGAATCAGTCATAA---AGTCATATTGACAATAAAAGCATTA------------GTCT------------TCTAACTTATGGATAAAAGTTTATA-------------ATTACATCAGGATTTGGAGTTGAACTTGAGCTGAAAACTTGCTTTCATCACCGTTGGCTACATGGCCT--TCGAAAAATTATTCTCAGAAATTTTTTCACCAATTATGAAGTGGGA-CCTTATATTAAACAATCTTACTGGATTGTCTGGTTAAATTAATATGTATTTGGAAAGCATTTAACATATTTTCTATTAAATCAAGCACCAACTGTAAGCACTTTAGAAAAGTTTTtattaatgtaagtaatgataaatacatttacataacttcatttttttttt------------------------------------------------------------------------------------------------agtttatgaaaTCCCTGATgcaaca---ttttcttatttaatataaacaaaatcccaA--GAGACCAATAATATGCTTATATTAGAGATGGAGATActaaagaacagaaagatgagAATACTTCCTTACATGTAATTGTATAGAAATTACTACAAAACTGAGTGAATGTCCAGT--CTGGAAATTCTAGTAAAACCACCAGGCTGCATATCATGCT-TATGTAGCTGGGATCCCAGATTTTGGTTGGATGACTGACCTGAATTACCTCTGAGCTCTTTGTgcttgttcatttattcatacataca---------------------ataaatatttactgtacaACCAATCaagc------------aaaaattcaaaatatg--------------------------------cctaaagatatacaaatttggaaaacaatgaatatatgacataaattttctataaaacagaaaa-------------aaataaatatg------------------------------aaaaatag-----------------------------------tcCAATTTTC--AGTTCTTCACATGGATTTTATTTAAGGACCCACTGAC--------------------------CCCCAT--------TCTCTTTTCCAACCCTCTCCCCAAATTTAAAAGTACCA--------------------AGAAACTAGAAAAT---------------TGTTTCA----------GTTTGag--------------------tgccacccccac----------ccccaccccaccctaagGAGCAGGGCTTGTTGGAAGGTTGAAATTCTGAAAAGTAGGCAGTCTTTGGGAGCTTAGGAAAGCAGGAGAGAGCCCGGAACTAATGTTTCCG-TGGCTGAGGTTCTCCGAGGGAAGTGCTTTCTGGGGACCGGTAGTGGAAAGCTCTTGGGCTGCTTCCGGCCACCTCAGCGGGAAGCGGAGACCGAGGCGCTTGTGTCTTAGGAAATTGAGGTAGAGGTTTTACTGTCCTACTACCAAAGGAAGTGAGAACGAGACGTCCGGCAGTGAGGGCCACTACTGGGTCCCCGTAGCCAGTGAATATGGTGTTGCTAACGATGATCGCCCGAGTGGCGGACGGGCTCCCGCTGGCCGCGTCGATGCAGGAGGATGAACAGGTAAGCTGCTCCTAGACCTCCG--------CTGCCCCC

a score=30947
s chr3            97901903 3208 + 160039680 AAAGTATATTATTCAGATGAGCCCAAGAATATGATCCGGACAAAGGAGAT--TGGGGGCTGGGAGTCTTAGAGAACACTTCCTTTGAAAAATATTTTCCCCGTGAGGGGTATCAGTGGGGTAGAGATGGGCAGAATCTGATCAGT---------TGCACTGAAGTCTAATGG-AGGAGAGGGACCAAAGTGGGTCTGAAATGCTACTCAATATCAGTGGGCCCCTACTCTCTGCTTTGAAATTTTTCTGAAAAA--AATTCATGGATTCTTTCTTAATTTTAAACTTGGTATTTATTTGATATTGGTCTGCCAATATTGGT---TTGTTTCATTGATGAG-----AAGTTCTCCACAGAAGTGTTTTGTTTTGTTTTTCTGGTTGTGATTTATCATTTCCCTTTATTAATTTTGATTTTAAATAATAAGCCTTTCTGAACCTTCAATGTCTGCAGAAGCATCGGTCTCAGACTCTTGTTTTACCATCATGATAGTAGACAGAACGTCACACACAGCCTCATATAGAAC----AGCACTGTCCTGAGAGTGCTAGGGGTGCTATTTCTCTGGCCCTCCTCATACCACCCATGTCAGAGTGTGTGCTCTTATTGCCCTTCACAGG------GGCTCTTAGGCTTA---------------------AAGTCACACTGCTAACAAGTAGGGTAATGGAATGTGCC--CAGGGTTGTTGGTGGTGCTGGTGCTGGTATGGTGCTTTGCTTTGCTTTGGGGGTTGGTCTGTTTTTATCAgggactgttcccatttggagctggttgatactttgttgggagagactgtcctgtgccttgtagggcgtcta------tccttggcctctacttccagacggcagtagcaAAAGTTCCTTTAGGGACAAAATCAGGCCTGGTTGAGAATTGCCAGTTTCAGTAAT-CAGTATTTTATTAAGTAAGCTATTGTTTTTAAAATCAGTATCAGTTTGGCTCTAGACCAGAACCTTCGTTCCTAATCATTATTCTGTACTGTCTTGTTTAAGACTTTTCAACCACGTAGTCACTTCTTACTAATGGAGAAATAACttttttttttagaaaattgggacaatttctagatagagcttgccttgaactgaccccactgtcttagccttttgaatgctagagttacaggtgtagaccaccacaccAAACTCAGAAATTGCATTTAAGACATAGATTATCTTGACCAAATAGTCGTATATT-AAGTACTCTAATTGTCTAAGCCAAAGTAATGCA-TATACTTTTAACTATTTGTACTGATACAACTTGAGTTATTTTTAG----ATATTTACTAGGAGCCAGCCCCTGTGTAAGCTCTTAACTGCCTTATTACTGAAGATGACTGGT-ATTCAGCTAAGACAGGAAGGAGAGTAACATTCACATA-TAATATAGACAGTGTTTTATA--CAGTGTTGACT----GCTTACCTAGTAATTTAGGCTTAGGACAGGTAGAGAAACAACCTTCTCTTTGAAATCCCAGACTTGCTAACTGATAATCT--------TGTCCCTTTCCTACTCTTTCTTTTCTTTTTTTCTTTTCCCTATAATGACGTTTTTCCTTTGCACTTTCTTCTATCTACCTCTCTGTTCTGTCTGAAAAGTATTGTATTTGCGCT------GTGCAGCC----------------------------------------GAGCCGCCTTGCAC---------------------------------------CCTTATCACGTCAGGGCGGTTACTATAATTCCCTGTAGAGGAAAATGGCTGCCTCTTGATTCTTGGTCCAACTGGCCTTTGACCGGCTGAGTCCATCAAGGATTTATCAATGATAAGACCTAGCTAAACATTCTTGGAAAATGCTAGTGATCTTTGGCAATATTGAGGTAAGAAGTGGGCAATAATGGAAAGGGGACTCTGATGCACCTTCATGAGGTCATCCATCATCCATGATGTCCATGATGGGGTGGAACTTGGCTGTCTAATCTCTCACCCGTGCCTGTTAAGTAAACTTGGTATACTCATTGGTTTGTAAAACAAAAACAAAACTGAAACATTCTTAGAAAGGTGAAGGGTGATATTTGATAGCACTAGTTGTCCACTAGGCCTAGGCAAG----ATGGGAAAAGTCCTGAGGTTCTGAGGAAAGCATTGTCTTGTACCTTTTGTAATATAGAGG----------------------TGGATAATCTTGTTTGCCTCATGGCCAATCCAGCTGTTCTCCCTCTCTTCGTTATTGGATCACTAACATATCCTGTGGAGTGGACCGAGGTTTGCTC-TCTGT-----GTGAAGTGGAAAGCACAAGCAGGGCATCTAAGTATTTTT-GCTGAGCTAAGGGACTGTGAGCCCTTTGTGACTTTGACATTGAAAGCTGTGTCTGTCTGTAAAGCACTGGTTAGGTTGTTTTTGTCGGATCTTCCTTAGTTCTCACACAGCTCCGTGAGCTTTTCCTGTGAATTACATGATTGACAAGACTTTGT------------TTAGAAGGTGGATCTACTGTTGAAACACTTTTAATCATGGAAGTGGAATGTcacagtgcttgaagagggg---ctatatgtggtcagattatctaggc-caaatcctagctcttccctttctagccccatagtgtccttggcaaaat--------------------ttgg-----------------------------------------------------------------------tttctaaaatagaatatt------------------------------------------------------------------------------------------------------------------------------ggcataataattctaagcacctcctagagtaagtataatgatt--gtgagctaaagtatgtaaagtgttgaaattagtccctgcacaGAAAATGAGT-----ATTAACTTTGTTTATTTTTGAAGTGTTTTTCTGAATTCTAGCCTGTCTTTAAATTTACAAACCAGAATTGCACGTAGTACTCTTTGTGCAGAGATGGAGTGAGCAGGGGTGGGTGAATGA------TTTTATACTACAGGATTTACCCATGC-CATTTAGAAAGGTTGGAAACTTACATAACCGAAAGTCCAAGATGCTAATCATGCTTATTTTCAGTAAATCTTTACTCAAG--ATATTCTCATAATCTTCCCCTCCCCCTCTCTCCCCCTCCCT----GTGTGTGTGTAAAAT----TAATGTGTTATATT-TAAGA----CCaacttaatt--tttccatttaacagttgtatatgttgaacattgtctcac--accatta------aatattttaatggctgcctaatagtctattatgtgaatatgccaaaaaaatcattatttagccaAGACGGTTTTGTTCTTAGGAATGATAATGCCTGCTGAACCAGCATT----AGTGTTGGCTGTCATACTATAATCTATGT---AGATTTGTCCCA------GTGCATGCCATTAC----CTTTCTTCCTTAGCACATTCTGAAATTGTAGCATGCTTCCAACCATTTTATCTTATAATTGA
s HiC_scaffold_1 107753676 3062 - 233722169 AAAGTAATTTGTTCAAATAAGCCCAAGAACATGATTTAAACAGGGGAGAGAGTATGGACAAATTTCCTTGAAAGGAAACTGATATGAGAAATATTTTACCCATAAAGGGTGACCGTGGCGTGGAGAGATTAGTCATCTGATCTTTCCAacttttttcattgaattttaatgTCAGCAAAGAATACAAAGTTA-TTTAAAAGTCTATT-AATATTAGTGGGCTTCTATCTCCTGCCTTGATACTTCATTGAAAAAGTAgttgatttattattgtttgtttcttaa-----------tttgtAATAGATCTATCAAGGTAGGTGCTTTGTTTCCCTGACAAGGGATGAAattttacacacaaaaaatat-ttttgctattgtaaatcccatca--tatttttctttaggaattttaattttgaataataATCTTTGCTAAATGTTTAATATCTGAAAATA------------ACTCTAGACTTATCTTTAATCTTATATATGAAACATT---TATAGTATACTATTACATGCTAACCCCTGTGCTAAGC---CGAAGTGCATTATTTTATT--CAATCTTCATACCAACCATACTAGAATAGA----ATTATCTCTATTGATAGATTAGGAAGCTGTGAGTCTTATAAAAAATAGATCACTTGCTTAAGTCACACAACTAATAATTAG-----TGAATTGTTTCAGCAGGGTTTTT--TCACGTCAGTACAGGTG---------------------------------------------------ACATTTTGGGAAAGGTAATTCTTTGTTGTGAAGAACTGTACCTTGCACTGTAAGAGGTCTAGTTACATTCTTGGCCTTTACCCCCAGTTGATCGTA---ATATCTCCCTC----------CTCTGCTTTGTTA-----TGACAACT-CAGTAATTCCAGATATTACAAAATGTCTCCTTGGGGGCAAAATCAGC-----------------------CATTAGTGCCTAA-CACTGTACTCGACTACTTGTTTTAAGATG--------ATACATTTACTCCTTATCACTCCAGAATTAAGTTTTT-------------------------------------------------------------------------------------------------------------------------AAGAACTAGATTATCTCCACTAGATAGTTGTATATTTAAGTGCCCTAATTGTCCAAGCCA--GTAATTTGGTGTACTTCCTATTATTCATACCGATATAAAT---ACCATATACAGTATTATGTTTATTAGGTGCCTGTCTCTGAAC-------TAGCTGCCTTATtagtagaaatgaaaagttaTTCAGATAAta-----------gtaaaattcacaaaataata----cagtgttttATATCCAGTGTTTCCTCTGTAATTAACTAGACATTTAGGCTGAAAACAAGTGGAGAAACAAGCTTTTCTTCACACACCTAGACACCCTATATAATAGCctattttggggggtttttttccAATCTTGGTATGCTTTGCTTTT----------AGGATGTTT-------GCAATTTCTTC-ATCCACCTTT--GTTGTACCtcagaattattatattttctttaattttgcgCAGCTCAAACATAAAGGTGTTCAATTTAACTGGATAAACACGAAGGGGCTGCTCCGAACAAGCAACAAGTTTGTTGTACAGTTAAAGTGCATGGTGTTCCCTGTCATTTACGGTTGATAATTATAATTGCTCATAGAGGAAAATGG-------TTGGTTCTTGGTCCCACTGGCCTTAGACCAGCTGAGTTCAACAAAGATTTTTAAGTAA-----------------------------------------------------------------------------------------------------------------------------------------GAGCTTAGC-------------------------------------------------------------------------------CCTTAGAAAAGCAAAAGATGATACTTGATAGAAGTAGTTGTCCAGAGGTTCGAGGTGGGGACAATGAAAAGTGT------------GGCAAATTATTGCCTTGTATCTTTTGTAATATAAGAGAGACAAATCTTAAATATACTGTTGGGTAAACTCATTTGTTTCCCAATTTGTTTAGTTATTCTTATGCACTTTATTATTGGATTACTAACAGATATC---------ATTAAAGTTCATTCATCTGTTCTTGATGAAGTAGAAG----AAACAGGACATCTAAATATTGTTAGGTGGGCTA----TCTGTACGCTTTCCATGAC--TGACCATTAAAG----GTCAGTTTATAAAGTGGTGGTTATGTTG-TTTTGTGAGATCTAAATCAGTTGCCACATGGTTACTTGAGCATTTCTTATGAATAAGAT--TTAACATTAAGTTGTAGGACAGTACAGTAGCAAGATACATTtac---taaaacaattttaaatgtagaAGTGGAATAGCATAACATTTAGAGAAGGAGCCCCAGA----GCCAGATTGCCTGGGCTCATATTCTGG-TCCTCCCTTACTAGTC---TAGAGTCCTTGGCCAAATATAacatctcaaatttaaaattggcttcttgttgttgtttttgttgttgttggtttgtttttaaaagggCGCCAAAGTTATGCTTTCAGGGATCATTTCTAAAAGAGCATCTTTCTGTGTTGTACAGACttgtcttaaactcactgtgtagctcaagctgaccttgaactcgagatccttctgtttcagcctcttgaataaaagtcctggaattagaggcatgtgccaccaggcctgactGCATAATAATTTGAATCACCTCAGAGGGTAGATGTGAGTATTAAGTGAGTTAACATATAAAGTGTGTAGAACTGTGT-----GGCAGAAAGTGAATGCTTAATTTCATTTGCTTACTTCAGAAGAATCTTTTCTATTTCTA-----CCTTAAGTTTCACAAACCGCAATTGCACACAATACTCTGGGTGCAAATATGCAATGAATAGCAATGAGTGAATGAGTAAGTTTTCTCAATATAATATTAATTCATACTTATTTAAACAGTTTAGCAATATGTATAGCAAAAAAGACCAAATGTTG--TATTTTTACCTCT----AATCTGTACCCAAACTATATCCTTTTGATGT---------ATGATCTTAAACTCAATGAGAGTATATGTATAAAATTAGATAATGAGCAATACTGTAAAATTGTTTGCcttcatttgtttccatt----aatAGTGTATAAAGAATATGGTCTCATTAAATATTATACTATAATATTTTGATAGCTGCATAATATTCTATCA--TGAATATACCAAAAAGGTTGT-----------GTCAGTGTTATATTCA-GAATGGTAA----TGCTGAGATAGCACTGTAAAATGTTGATTGATATACCATAATCTTTACATAAGATATGTCCCCAATATTGTACATTCGCAGactcttctttcttctgtgtcAGTTGCTGGTATTGTAGCATACTT-TGGCCATCATTTCTTGTggttaa

a score=39395
s chr3            97905637 1770 + 160039680 ATATAATAATGCCAATATAATGTTATAAGGTAATAGTTATTATAAGGTAATGTTTAATGTATGAATTGATATAATATCCacatacatacatacatacatTGACACAAAAACATTTTCTCAAATGAATAACATTATA--ACAGATCATTGCCATAACAACAATGCTAAACAAGATAAATGGTCCACAGTTATTCATTGA-GTGTACTCTGCCTGACTCTCTTGGCTTACATTACTTCATTACTTCATTTCTTTTTGAATTTCAGGTTGTCATTTTTCTGTCTCTGTA--CCTTTGCAT------ACCTGCCATGT--------TCTAACTGCCTCCTCCTTTGTGCTGTCAGCTCAGTAGTGTCTTGTCTAGAAGTTTAATATTTCATGGTGTGCTTCCACAAAGTTAGACCCCAGA-CCCAGACTCTGGGAAAAC-TATTATAAGCACTTTTACTTCGGTGTAAAGAGATC----TCTGCCAAAGGAAGGCT--AGTCTATCTTTCAATACAAAATAAATAATTCTATAAATGGAATAATTTGGGCTTTCTGTTAAATGGCAGTGTGTGtaaactgggtgacttacaaacaacaaaa-------------aacactgagaagtccaagatgacaaggttagcggatttggtgtctg-----------cttctcattcatagatagcaactctgtgagtctttgtgaggt----acaggggccaatctaactttctggaatttcatacagggacatcaccctcaaccattagcactccatcatcatgact--gagcatctcccaaaggctgcacttcctt---ccatcagcttggTGGTGAAATGCCATAAGCTTACAGGTCTGGGCAGTAGAG---ACCTTCAGGCCATCGCTAGCAGGGCGTCCTCCTCTCTTTCTCAGGGACAGGGTGGATTAGCAATGTGTGTTGTTT-CTCAGTCT-CATGTACTGCCTTTCTCCTTTGAATCTAGTAGGTTAGTAAGGTATGGTGTTTATCCTTTTAAAATGATGCGACTATAG---------------------------------------------------------------AATACCCCCTCCTCTTCTTTTTAATA---------AATTGTTCAGGGAAATAC-------ATCCTAACCATTTGAGTGTTGGC------------CTTTTTGTCCAGATCCCTCTTTATTCCAGCTTGCTACCTACACTGGAGAACTGGATAGAGTGATGTAATAAAGGATAGCTGCCCAT------TTTGC---------CTCACT-------AGCTGCAGGGCCAGCGTTCATGGGGTTTTCAAGCACAGGCACGCACATACAGTCTTAGTTAAATGCTC-------TTCCACTTTGTGGAAGGTTCTG-TTGATAATCCAGCATTTAAAAAGAATGAGTT----------------CTCAGAACTCTCTCTGGAGTG-----TGTGCAGGATGGTGCTATGAGAT------------------------ATCTAATGGTAAAAAGCACACCAAA--TACTTTGCATATAGTTGACATGCACAGGTTTTCTTCTTGGCACTTACATAT-TGGGATCTTGGAAATACTAAGAGTTAGGGTTTCTCATTTGTTCTAAAAGTAAGACGTTTTATTTTTCTTTATTGAAATGAATCTTAATAACTGCTAAATAAAGGACCTTATTTACCTAATATTCTTGTGATATCATGATCCTT-CTAACTGATATAGCTTTGTGTGATGTGTGTTAAATTTTCCAATGAAGCTATCTTTTTTCAGTCAGGCCGGGACCTTCAACAGTATCAGAGTCAGGCTAAGCAACTCTTTCGAAAGTTGAATGAGCAGTCCCCTACCCGATGTACCTTGGAAGCAGGAGCCATGACTTTTCAGTGAGTATAGCTCTGATTTTGTGTGTGTGTGTGTGTGTTCATTTAAATTTGTACTACATTTATGTAATACCTTGTAA
s HiC_scaffold_1 107758046 1902 - 233722169 aTATGATAATGTTGACATGTT----TATGATGTTAATTATTGCCAAGTACTgtttaatatataaaagtatatg---------cacatacatgcatattgttacacagaaatattt-cttaaatgagTAGCATTATATAGCAAATGATTTGCATAACAGCAgggctaaa--agaaaataaacctacAGCTAATCCTTAAAGTAGATTCTGCTTGGCTTCCATGGTGTGCCTCAT---ATATATTAATCTCCTTTTCATATTAAAGTTTCCAGTTCACTGTCTTTGTATACTTGTGCATTCGCTGATCTGCCACTTGTATCATTTTTCATTGCTTCCTTGGTTTTATTATTAGCTCAGCAAAATACTATCTAGAATTTTAAGGTTTTACTTTATACTTTCTCAAAGTTAGACCTTGGAACTCAGACTCTGGGAGAATGTAGTGTAGATACTTCTTTTTcaacatttaattattaaaatctgCTAAAAAGAAACTGTATTCTATCTTccaatccaaaataaataaatccg-aAATAGGATAATTATTTCTTTCCATAACACA-----------AATATAGGTAgcttataaaaaatttatttttccagttcttGAGACTGGGAAGCCCAGGACTAAGGGCCTAGCTGAATTTGTGTCTGGTGAGGGCCTACTCCTTGTTCACAGATGCC-------TGGGTCCTTAAAACGTCAAAACAG--------TTAGTACTTTGGGAtcttttataagggcactaattTTAATCATTAGGGTTCC----TCATGACTTTAATCCCTTCCCAGAGGTTCTTCTTCCTGAAACTATCATCTTAGGGGTTAg--gatttcagcatatgaattttggaaGGGAAGCAAACATTCAAACTATTGCT--------GACCTGACCAGTTTAT--------GGATGAATAAGCAATATCTATTGGCTGCACATTCTTCatgcatttcttttctcctttgtgtctACTAGGCTA-CAAGATAacgacttttttcttttgaaaagacaTTACTCTAGTAGTAAGCACTTTCGTATACAGCTCTAGCAGTACAGAGAAAAAAAACGTACACAACTTTCTCCAATGGACCCCCCCCTTAATTGTAAAAGCATTTAAGAAGTACTTAGAGAAATATTATCTGTATCTatattatttgaatgtcattatatttttatttttgtttgcatataTCCTTCACTATTCAAACTTGCTATCCATACGTGAGAACTGAATAAAGATATGCATTGAAGAATATTTGACTTTCCAGTCTTTGCTCTAACCTGCTCATTTTTACATAATTACAG--TCAATATTTCTGTAATTTGT--GCACATGTATACACATTCAGTTTTGCTTACATGCTCAATGATGCAACATTCTGAAGAAGATTCTGCTTGACTTTCTAGCAT-----AAAAATGAGTTTCAACAGTCTTTTGTTCCCAGAGTTTTCTCTTGAGTACAGCATATGCTTTGTGGTTCTCTGCTAGTAACTGAAAGTGCAATCGGTACTGACCTAATAGTGGAAAGAACATTGAGAGTGCCTTCAGTGTGTTTAAGATACACATTTTTGCTTCTTAGCAAATAAAAACGTGATCTTTTTGAAGATCTAGATGTTAGGTCTCTTCTTTCGTTCTAAAAGTAGGCAATTTT-------TCTATCAAGACAAATCATATTAACCTGTAGATGAAAGACCTTA---ACATAGTACCCTCATATTATCATATTTCTTGCTGATTGATTCAGCATCTT----TCTGTCAAAAAATCTTAAATGAGAGTGTCTTCTTTCAGTCTGGCCGAGACCTTCAACAGTATCAGAGTCAGGCTAAGCAACTCTTTCGAAAGTTGAATGAACAATCCCCTACGAGATGCACCTTGGAAGCAGGAGCCATGACTTTTCAGTGAGTATAGTCCTGGTTTC-----------TTTACAATCATTTAAATATGAGAGACAGTAatataaaatcttacaa

a score=53781
s chr3            97912552 2108 + 160039680 ACCTTGTCTTGCTTTTTT--CCCTCCAGCTACATTATTGAGCAGGGGGTGTGTTACTTGGTTTTGTGTGAAGCTGCCTTCCCTAAGAAGTTGGCCTTTGCCTACCTAGAAGATTTGCACTCGGAATTTGATGAACAGCATGGGAAGAAGGTGCCCACTGTGTCTAGGCCCTATTCCTTCATCGAGTTTGGTAAGATTGGAGCCGAATTTCTCTATTCAGGGAGTAGCACTGTGGAAAAACT--------------TATAATATTGACATGTTT-----------------------------------------------------------CCCCCTGGAATGCCTG---------------------GGAAGGTTTGATTCGTTCCCCTCTCCAAATTTACCTTTTTTTTTCC-----TTTTGAATGGAGAAAGCTTCATTCTTAGTAGTAAATTCATCGAGTCTTGTCCTTTTCCCTGTAGCGCATGTGCCTTTTGTTGTCTAGTTTGA-CTCCTTATTAGGGTTATTTGTAACAAATG---------AACATTTGTTACATGAAGTAAGTCTA--CTTGATTATC-TTATAACTGAGGTCTATTTTCCAATCTGTAGACTGTCACAGGAAGACTAATTTTATGGAAATCAGAATTTGGAAATCAGGAAAAATG-ATGATTGTTTATTTCAATAGAATAAGAACCTCTA---------ATTTAAAAATATAT---------GATATTGGAAAACCCTCTTTACTACATTCAGAAGTGGCAAGCATCAGAGTTCTAAGTAGCAGGCACGTATTTGCACAGGAGTTACGGGAAGGTTCAGTGCCAGTCAAACCTGTAAGAGGCCGTGCTGGCAGGAGGGCACGGGAAATGGCCTGTGCACGGTAAGCACC-------GGGAGTGAGGACAGGTAGGCAGAATACACTGCAT---GAAATCTTAGTCAAAAGAGAAAC--ATTTTTATGCCTTAGATTTTCTAAAGT-TTTCAAGTTTGTTAGGTGTGT----CACCTTGCTTT-ATTATAATAGAGAAAAATTGGC---------------------------------TACATGCTAATTTATATGATGTATATGGTTTTTTAATGTTATTTTTCTGGATAATAA--GTTTAGTAAATCCAAGTGACTAATAAGACACATGTGTCAAGGTCACAAAGGAAATACGTGGCTCACCCAAGTTAGCTT-CAGGGGA---------ATAAAGATGGGAATGGACTACAA---CACCAGGCATGG--TGACTTGGGAC-----ATAAATGTAGTTGTTACCACCCTCAAGC-TGACGATGTAAAGGGAAGGCGCAGTTTCTGAAT-TGAAGGAGAATATTTAGGGGGAAGACCAACTTGAGAGGGGCAGATGCCTTAGTGGGGGTACTGCTAGTCCACAGTGAGTGCTCAGGAAAGTGGGAGTGGTGTAAATGCCCTGCCAACACTACCTGCCCCCT------CCTGCTGGG-------CTTCGTGGCCAGAGCCTGACTAGAAACGGGAGCGTCAGGGGCCCACTGATGTCCTCCATCCAGGTTAGCTTCCCAGCGTGCAGGGGAA------------CGGAGTCAGCATTCAAA----TAAGTCAAAGGTTT---GGGCACACAATATTTCTATGGCAG---------------------------GTCATTCCTGCAGTGTTGAGAAATCGCACGTGTAGGCTACAGATGGATGAGGCTGCAGCTCTGTATTGGTAGTTTTGGAAGTTTTTC-TATCATGTTTGATTT----GAAGTGGAAGCACGGGGTAAGTTTGGAAAGTAGGCTG--------------TTGGTTGATCACT----AACTCTTTTA---ATAATG-----------------CCATCATTATTTTAGGGGTTGCGT-AGAACTAAGTAATGAAGCCCAAATGGTCCTCTAAGTACAGATTGAAATCTTTCTGTCTTCAGGAAG-----TTTACTAGAATGGGTCTGGTTATCTCTAAGGATTCTGATGGTAAATCCTTAGGCTCAGAGAT-TCAAGGGACAGTTCTCCTGAATGGTCATCT----------TAACCTTTTACAAACGAAGAGGTCAGAGCC----------------------------AACAGCAGG-------CAGATGTAGGAATAAACTGGAGACCGTGGACAGTGACTGATTAGGAGTAGACTCAAGTTCTTCAGT---GAAGGAACAGGAAAGTTGGTAATGGTTACCTGTCCTCAT---TCTAGATACCTTCATTCAGAAAACCAAGAAACTCTACATTGATAGCCGTGCTCGGAGAAATCTAGGCTCCATTAACACTGAATTGCAGGATGTGCAGAGGATCATGGTGGCCAATATTGAAGAAGTCCTACAGCGGGGAGAAGCACTCTCAGGTATCTGAAAACCA
s HiC_scaffold_1 107761270 2381 - 233722169 actttgtcttgcttttttgtctttccagctacattattgaacaGGGAGTGTGTTACTTGGTTTTGTGTGAAGCTGCCTTCCCTAAAAAGTTGGCTTTTGCCTACCTAGAAGATTTACATTCAGAATTTGATGAACAACATGGGAAGAAGGTGCCCACTGTATCTAGACCATATTCCTTTATTGAATTTGGTAAGTTTTG---------CTCCTTCTCAAAGGATTAAACTGTGATGAAGCTGTTTGTTACACTAGTTTAATAatgatgtgtttattttgtttttgttttttttgagataggatctcactgtgtagttcaggcaaaccttgaactcacaggaatcctcatgcctcagcctcctgagtgctgggatgtcaGGTGTGCACCCTATACCAGATTTACATTAGTTTTTCCCCTGATGTTTACTGCTAAAATTTTGGCTTCT----GTTTTCTCTCcaattcttcctctttttgtctttttgaattaGATTTTTCTTTAGTCCTTTGAACTCTTTACCACAGA-ATTTGTATTTAATTGTTCCCCATAAGATTTGTCCCTTGGCTTGATTCTTGTCCAGGTTATCAGGATAACCAAG-----TTATCCTGTAGATACATACTGACAATAAGACCCATTTTATGGAAATCAGAATTTGGAAAGCAGAAAgaatgtggggttttttgtttttttagttcgGTAAGTTCTACTAAACGGTACTAGAAGATCTATAGTATAGTTGGTGTTGGAAGGTAATATTTACTATATT---AAGTAACAAGCAT-AGATTTCT-------------GTATTTATACAAGAATTACGAAAAGACTCAATGCCAGTAAGGCCTAATAAAGTATCTGATGGCAGTAGGTTAAAGAAAATGTCCTGAATACACTAAGCACTTAGTATGAAGAATGAGTATAAGTAGG---ATTAGGTTGCatctgatatttttaatatacaaagAAATTAGGTTTTTTATCTTAGACTTTCTGAAGTGTTTCAAGTTTGCTGGATAAGTGGCCCATCTTGCTTTTATAGAAATAGAGGGAAATTGACAAACACTCTAGTATTTCATAAATGTGAACTCTTGAAGTGCTAAGTTATGTAATGTCCA-GTTTTTTGAAGTTTACTTTCATAGATAATAACAGCTcagtaaacacaa----------agaaaaaaatgt----atcacaCAGGAAATTAATGGTACACTCAGATCAGCTTACAGGGCGTGGTGGTTTACAAAGATAAGAATAGACTATAAGAGAACCAAACATAGAGTAACCTGGGATCAGTAACACAT-TAGTTGTTACCATCCCCAGGCCTAAAGATTTAAGTGAAAGGCT---TGTTTGAACCTGCGAAAGAACATTTATAGAAGAGACCAACTTGAGAAGAGCA------TTAG-AGGGGTACTGTCTGCCCAAAGTCATTTCATGCGAA-----GATTAGATTAAATATCCTGACATTACTGTGTACCCTCCTTCTTCCCTACTGTTACAGTTCCTTCATTGCCTGATCTTAATTGGAAACTAGAGGATGAGTAACCCATTAAGGTGCTCCATATAGTTTAGGCTCCCAAGGCGAAAAGCAAGACCCTAAAGGGAAGAAGGGGCAtctaaaaaggcaaataaaagggGTCCAATGCACATAA-ATTTGTATGTTAGCAAagttgaaaatatctttaaaaataaatcattcttttagtttttgagaagcACATG----GGCTAAAGATGAATGAGACTTCAGCTTTATATTGGTATTTCGGGAAACTCTtggtatcatttttgttttacctgAAGTTTAGGACAAGGCCACATTGCGAAAgtatattgaagaaaatattttttcagtggaATATTTCTCAACTATATTAGCTATAATGATGGTAGAGGGTTTTTGCTAGTATCCTTTTAGGGAAGGTATTAGCCCTAAGTAATACAACCTTAAGAATCCTTCAAATACAGTTtagaat-tttctattttcagaaagaaagacTTACACCAGTGGATTTTAATTTCCCTAAGGATTCTGATAGTAAATCTTCTAATTCAGAGATATCCAGAGGGCTTTCTCCTGAAGGGTCATCTATTCAaatctttacattttataaatgagagaaCCAAGGTTCAGGTTTTCATATTCTCCTCAAGTGTTTAAACGCTGGATAGTCACAGATCCAGGAATAAACTGAGAACTT----------CTGATT---------CCCAACTTCATTATTTTGGCAGACAGAAACAAGTTGTTAAGGGTCGCTTTTCTTCATCGTTGTAGATACCTTCATTCAGAAAACGAAGAAGCTCTACATTGACAGTCGTGCCCGGAGAAACTTAGGCTCCATCAACACCGAGTTACAAGATGTGCAGAGGATCATGGTGGCCAATATTGAAGAAGTTTTGCAAAGGGGAGAAGCACTGTCAGGTATCTGAAAGCCA

a score=84381
s chr3            97920995 3788 + 160039680 [encoded data, 4346 characters]
s HiC_scaffold_1 107775859 3906 - 233722169 [encoded data, 4346 characters]

a score=73560
s chr3            97930176 3963 + 160039680 [encoded data, 4404 characters]
s HiC_scaffold_1 107783392 3904 - 233722169 [encoded data, 4404 characters]

a score=12060
s chr3            97934900 461 + 160039680 AACATCTTAACAAGTCACCTCTTACCTAAGGTTTGATGCTCTCATCTGGCAGGAGCAGGGATGGTTGAGTTTCT------ATTAAAATTAAAACCATATGCCC-----CAATGTGGCTTTTACAAAGGTTAAGATTACATGAAACCTTTACGCGTGTTATATTTC-TAGCTGTCACCATCTAGTAACTGTACAGATGAGTAAGCCCTAGCCACAGCTGTTCTGTCTC--CTCTACCCAGTGTCACAGGGCTGTCAGAAAAAGACAGGCTTTGATGGGGAGAGGCTACGACATGTAAGGAAGAGTC--ATTGTGATGTGCTGGGTGTCTGGACATGCTCTGAGCTTTTAAGGGCAGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtCTGACTAGATACAATGAGGCAATGAGATATAATAATACCACTATATTCTTTAACTTGTCCTGTATTCTTGTTT
s HiC_scaffold_1 107787477 404 - 233722169 AAGATCTTAA---GTTACCTCATATCTAAGCTTTCATACCCTCATCTGG---------AGATGGAGAAGTTTCtgtgaagattaaaattaaaagcaaatacaCAGTAGTAACTTGTATTCTGCAAAGGCTT---TTACA-----CATTTA----TGTTAAATTTTGTAACTGTTACTATCTAGTGAGTCTACAGATGAGTAAGCTCTCATCACAGCTGTTGTGTCTCTGTTCTATCCAACATGACTGGACTGTCAGCA----GTGGGCTTGGGT-GGGAGGGACTAAGGCATATAAGGAAGAGCCTAAAGGTGGTACGATTTATATCTCGACATGCTTCCAATTTTCAGAGG-ATGGTG---------------------------ATgataatgtgtgtgtgtcttactAAATATGTTGA----------------CTTACtactgtattatttaatttgtcctgtatttttattt

a score=84676
s chr3            97937091 5940 + 160039680 [encoded data, 6659 characters]
s HiC_scaffold_1 107788014 5870 - 233722169 [encoded data, 6659 characters]

a score=14988
s chr3            97952530 1160 + 160039680 tagaaataattacacaagtataaagttgccttgttcttttcaatgactattca---tgtctttcgatgagtgcagtataatttatgcagccaatctgctactatgaatggttgagttgcttacactttggggactacaagtaaatgcttcaaggatttccttggaagcaggccatggtgtccagtgcaaacaagttcacaggataaatttctgatagagaagttgttttagtcaaagattgtaatctca------------atagtaccaaactgcactgcaGTTTTTGAGCCCACTGAAAATGTTTTAGAGgctgggcatggtggctcatgcttttattctcagcattcaggaggcagagtcaggcagatctctgtgagttcagagtcagcctgctctacataaccagcgctgggacagccagggctacataacgaagtcctgtctcgaaaacaaaccaaaAAGCAAGCAAAACATTTTAGACTTCTTTCTCATCATATCCTTACCTTATCACCTAGGTCACCAGATCTATGTAATTTGAGGTT--TTTGtttttt--tatttaaattatattaGAAGCAGAACACTCTTTA-ATATTCAAGGGCAAATATTTTTAACTA--CATTTATGACTTGTATCACCAA------------TTTTCTATTGGATTTTAACATG-----GTTTAAGTTACTTTATAAGAAAGCCATATTTCATTC------CATTTTATTTCATGCCAAGATACTTCCTAACTTTTTTTTT--TTTTTTTGTCATTTAG--CCTTGTTTGCTTTATTCAATTTTTCTTCTTTGCCTTGCCAAAAACTCTTTTAAT----------------------GCACTTTGGCTCACTGCTCTCTATTAGCTTAAGAGGGTTTTTAGTTGAGAAACCTCGCAT--TTCTAACACTGAAGTTGCAGTTACAAAAC---AACCAACACTTGATACTTCTGGTTAAGAACAGCAGATTCAACAAGTGCACTGTGTTCTACTTCTTCCCAGACCTCAAGCAAGACTTAATAGTTTGATTAAGCATGACACTCGGAAGGTATTaaagccaagaaaaagaaagaaaagaaaaggaagagaacaaaaggcacagaacaaaaaagT----------------------------GTCCTCCTTCCTTTCCATCCATATCTAAGCACTGTGACTAGTTTCTCCAGTATTGTTTCCAGGATCTCTTTATGCACATTTAAGCAAATAAGTAAATAG
s HiC_scaffold_1 107798318 1010 - 233722169 tggaaataatttcattaatacatacctgcctt-----tttaaaatgctgcttaGTATTCCTTTGAATGAGTACACTATAATCTATGTAGTCAAGCCACTACTAAGAGCAGTTGAGCTGCTTACAGTGTTTTGACTATCAATAATTCTGCAatgaatgtttttataaata--tcttaaagcCCAATGTAAGCCAATTCATAGAATAAATGTCTAGTGATGCAATTGCTGGA-TCAGAG--TATAACTTCATAATTTTGACAAGTAGTACCAAACTGCACTGCAGTTTTTAACCATATTGAAA-TGTTTCAAAGTCC-----------------CTTTTAT--------------------------------------------------------CTCTAGATA-------------------------------------------------------------------------------------------------CTCACCCTACCA-----GTAATCAGATTTTCCTAAAGTTgcattgctttgatttttattctttaagttATGAGTGAGATTGAACATGTTGTATGTATCTAaaagt---cattttcatttattcatctatG---TGTTCTACTTAGGCCCTTTGTTGTTTTCTATCTCATTTTATCTTGCTCTTATTGCAATTGCTT------AGCTCCATATTTAATGAAACTAGCCTTTTATC----------ATACTTCtgatatttttccttcatttattcttGATTTAGGACCTTctttattttatatgtcttttgttctttgccctgcataaa---tttttaatttcagggtGATAAGATTGTTCTGTGTTTTTACATGTAGCTTTCTTTT-GCTTAGGATGGCTTTGGGTCAGGAAGCTTTGTGTGTTCCCAGCATTGAATCTACTAATATTGAGATTAGAGCTACACTTGAGACCTCTGGTTAGAGACAGCAGCTTCAACACATGTATTGTGTTCTGATTCCTTCTGGAATTCAACTA------------TTGATCGAGTAATACATTCATATGGTTTTAAAGCCAAGAAAAAG--------------------------AGGCACAGACCAAAAAGTTTCTCTCATCCATGTCTCCCACTGGTCCAGTTCCACTTTCTTCCAGTCAATAAGTAAGCATTGTCACTAGATTTTCTG----TCTTTCCAGAGTTTCTTTATACTTATGTAAGCAAATAAGaatgtag

a score=41347
s chr3            97964510 1992 + 160039680 GCTCCCTTAGAAAATTAATGTAATAAAACATTCTCTTGTAATTTAGGAAGAGACTTGTTACAATGGGGTCAGGA-CAAAATTAGTAATAACAACTGCTGAAAGGAACAGAGTGGAGAAGCCTGTTGTTGATAAGGTGATGTGGATGTGAACTTGTGAATCATTCTGCT---TGTGTGTGAGCTGATGTTGAGATCTGATCCACGAACCCTTAGGGAAGGCACAAAGCCACTCCTCACCCTCGCCAT-----TCACAAAAGGGAG--GGAGGAAGACTTCAGACATGGTAGGCAGTCATGA---GCTGG----------------------TAGAGGT------------------------------ACTAAGTTTGGGGGCTTCTAG--CATGCTTCAAGGATGGAGCACTGCAACTGTGTTACCATTTATTTTTAGAAGTTCTGTCCTCGGGAGGCGGGCATACTGTTCACCTCTCACTGAATTAGCTGTGTTCCACGCAGCCTTTGGACATCTTTCTGCTGTAGCAGCAATCGGATCAAAGCACGTGtc-agaaagagaagtgaaaaacaccagatgtgagcgaaaccacagggggagttttcagccaggcggtgtacaccggatgaccccgtttggaatgtggcccaggacc-gggatagacaGACCAGCAAAGGATGAGACAGGACACACAGCCGTTATTGATCCCGATTGGAGCCAAATGTGGTTAACTTGGTCTATGACCTTGCTCA--AGTCATTGACC---TCTACATGACTTTCACCATCTGGGCAACACATGGGCTGCTCATTTCCTTTCAGGAAAAACTCATGGCAACCATGTTAGTCACAAGAAGTAAGAA--GGAAGCAGGACCTGGTGACCCGGTGGGTGGTGACATATTATACCCGAGCACATGAATACCACAATATGGAC----------GTGT--AGGTATGAATTTTATGAGAAAAGTGTGTATGAAAATACAGGATTAAAGACCGTGCCTCATTAGTTCA-AAAGTAAATAATCTTAATATTGACAATCGAAGGGTGTAACAGGACTTTTTGTTTTTTAGTCTTTCTTTGCCTAAGGTGCTTCAGAAATCCAAGGGTCAGACTAAAGC------CCTAGCCTGGCACATATTTAGGGAAGTAAATGTTAGTAGAGAATGGAGCTTACtccaaattcttactctttgccacttagatgctgtgtgcccttgcagaagtgatagttgt-gaatgtcaggttcctact-----ctactatacgaggccaatactaagatatacctcatgggcttgtgaaggctgaataaagtaataaaccaa---aagagaggaggagaatgc----tgggtaTGCGTTTGTTATTATTATCCAATAAGAATAAAGCTCTGCTTTAAAAAAAAAAAAAAAACAACTTTTTTTTTTCTAAATCTTGGGGAGTTGAACCTTGGACCTCATGcatgttcactaagtaccataatggaggcctgctcttttctgaggggacatgaagaagcagtagatctgaggtagagagaaggtgtggggaggggggttttgagaggagggggagaggggaggcttctgctcttgggatgtattacatgagagaagaagaaCA-------ACGACAGAAGAATCTTTCCTATCTTACTCATCTGTGCAGAACACTGGTCCCTCTAGACTTTAAACTAAGCTTTAGTCACTAGGCATCAAAGTCAT---TTTGTTCATCTATTCCTGTCTCAGCTCCTCTGAGTCAGGTTGATGCCACAGCAGAAGTCTCTGAAGCATCCGTGAGTCCTCTGCCCTTTCACCCATGAGCCTCTGATGTATCAGGATGCCCTGTCA---------------CCACTAAGGCTTAAAAAGTCTGATTTTTTTCT-------------CT----CTCTTTAATAGGA---TAGCTCACAGCCAAGACCTCAGGGAGA----CACATGAGGAATGAGGAAGAGGAA----TCCTGATCCAGAGATGAATTACTGCCTCCTCCAACCCTTCAAGGTGGCAGAAGGCTAT-----GGTACCAAGTCCAGGAG-------CCA------ACGTGCTGGAATTCATCTTGGGTCTCC--TACTGAGGAAATGGCTCTACATAAGAATATGGGAGAGGA
s HiC_scaffold_1 107805847 1920 - 233722169 gtTTCCTTACATTTGTAgtgtaatgaaaaaat-----ataattaagaaacAGACTTACTATGATAAGGTAAGGAATGGAATGAATAGCAAAGTTtgctaaaat-aagaaaacagaaaagctcaTTGTAGA-AAGGTTTCATAGAAGTAAACATACATAGTGCTTTGCTCAGTGTGTATGgactgatggagaaatatgacCCA-GAACTCTTATGGAAGGCATTT-GTCACTCTTGCACCCCGCTCTAAGAGTCACCAAAAAGAACAGAAGGGAGACTTCAGACCTGACAGGCATTTAGGAAGAGCTGGGGGGTTGGGAGTCTAGGTACAttagaggtctggaggctgccaAGGGCTGCACAGAGATTACTAAAGTTGGGGATTTCCGGGAAATGCTTCAAGCACAGCACAGTGAAACTGTGACACTGTTTATTTTTAGAAGTCC---CATTGAGAGGAGTGTCT----TTCACCTCTCACTAAATTAACTGTGCTCCTTGGAGC-TATGGACATCTTTCTGCTACAGCATCAACAGGATCAAAGCACGTGTTTAGAAAGAGAAGTGAAAAACACCAGATGTGAGCTAAACCACAAGGGGAATTT-CAGACAGGCAGCACACAACAGATGACCCAGTTTGGAATGCAGCCCAGTCCCTGAGATAGACAGAGCCTCTAAGGATGAGGGGAGACAGACAGAGGTTATTGATCCCAATTTAAGCCAAATGTTGCAAACTTGGTCTATGAACTTGCTCAGTGACCACTGACCTCTTCTAAACCACTTTTGCCATCTGTAAAATGCACATATTACTAATATCCTTGTAGGAATGACTAATGGAAAGCACGCT------AAGAAGTTAGAGCTAAAAACAAGATTGTGTGCTCTTGAAGATCCTTGTAAATGGTATTTGAATCTAGAAATACCACACCATGAACACAATGTGCAGTGTTAAGATACGCATTTTATAGGaaaactttatataaaaatatgagataaaagATTGCATCCCATCATTTCACAAAGTAAATAATATACACGTTGACAATAGAAGGAATTTGACGGGCTTTGT-----------TTTCCCCTCAAATAGCTCTTCAAGACTTGTGGGGTCATGCTAAGGCAGACTACCAAGCCTGCAATAC-------TGAGTAAATGTT-GTATAGACTGCAGTTTACTTCAAATTCCAACTCTCTGCCATTTAGTTGCTATGTGGCCTT-CAGTA--GATAACTCCAGAATTTTGTGCCCCCATTTCTGACTTGTAAAATAGGACTAAACTA----ATGCCT-----ACTTATGAAGACTGAAT---------AATCAGTTTAAGAGCTGAAAAGAGTACTCAGTGGATA-ACATTAGTTGTTATTATCT------------------------------------------------------------------------CCCCAGACCTTCCACATG----------GACTTCATGGCACTTtgcatttttc----------------------agttttg-----------------------------ttttag--------------------ttATCCCAACCAAATGTTTCCC--------------ACATTCTTGCACCATTTAAGAATATTTCccgttttattcatttatttagaacACTGCTTCCTCCAGACGTTAAACCAA-CCTTACTCACTCCTTACGAAAGCCATTAATTTGTCC--CTATTCTTGC-----CAACTTTGAGTCAAGTTGACTCCCGAGAAGAAATCTATAAAGCATCGCTAAATCCTCCATTCTCCCACTCCTAGACTTCTTACATAACAGGATGCCCTCTTAACCACAGGGGGTATCCCACTAAGGATGAAAGCGTCTGTTTTTCTTCTAACAGAAAAAAGACTTCAACTGTGTCACAGGACACTATATCACTTCAGGATCCTTAAGATGGCTGTCATTTGGAggatggaaaaggagaaaagttctGGGTGCA---ACAAATT-----------CAACCCCTCAAGAGAGAAGTCACCTTTAGAGAGGAAGATGAGCCAGGAGGGGGGGACCAGAGGAGATATGCTGGAATTCGTTCTAAGTCTCATGTACCCAGGAAGTGAATTTACATAAGAAGATGGAAAAAAA

a score=89749
s chr3            97968253 7241 + 160039680 [encoded data, 8135 characters]
s HiC_scaffold_1 107809091 6838 - 233722169 [encoded data, 8135 characters]

a score=34150
s chr3            97978497 1112 + 160039680 atttctcccttcccacctcttctagctagcagactcttctgcccctgacttggtgcatcttctctacctcacagctgtcgccctttctcggaccc--cattcttatcattctgttctgctttctcacagacttgattttgccaccgtcctctgagggtcca-----------ctcaactgtatggcatcccttcagctt-cttttccatagacaaaggcttctttatatct-tgccttctgatccatgacctggaagggtggaatccg-ttgatgaagctcatcttttgcactctgttttggagaggcagccctcaggtgacagcccaatccctggtccaatcaggagccattcctgggtaaaagaacaacctagctctgctgcacagagcagggggctgtgggtggggcagtttcacctcaaagaggaagttgggtgtggcgggcagtttgttgacataaaatccagtataGGAGTGTTCCTGGGAGCC-ATCTCTCATCTCTGACAGAGATAACT--GTGGGTTTACATCTGTCATCAGACATTCCCAGAGAAAGCAGAGCCAGATGCA-CCATTGGCTTTGTGAGTGTGGATTTCCCAT---CATCTATTCTTT---GCTGTCTTCTTTCTGGGCCTACTGTGATTCTTCAGCCTGTGCATGTTTGGAGTTCATTTGGGCCTGGAGTCTTTCTCCTCTTTTGGTGAGTTGGCTGCTAACTGGACTGCCTGACTTGTGAGGAAAG-TGAGTGGTTGGATCCAACC----------TTGGTTCTGAATCATTCTTTCATGTTGGAAACTAATGGCCTTCCTTCTTGCTCCCTC-TCATCCACTCGTGAATTCTCTGCTCCAGGTTGTCATCCACCTCTGAGTACCCTCCCTTCCCAGACCCTCCATCTTCTTCGTAAGGAATGGTATTAACAAGTAGCTATTGGGTTTAGGGAGAGTAATTTTAGAAAAATTGTTGGGGCTGTAACCAGGCAGTGGCCACGTGGGGAAGTGGCTTCAATAAGTGAAAGACTGCT---------------------------------AAAACAGCTGTAGTCT-AGAATCTTGTTGTTTTGTTAAGTAATTGTGTCTCTAATTATTTAGTATATGATTTTATACAG----TTTCAAAGA-----AAAATATGAACAACCAAtttatttcttt
s HiC_scaffold_1 107821244 1161 - 233722169 atttctttgttct----tgttcCAAATAACAAATTCTATTTGCTCTGC----GTGCATTTTCTCTACCTCATGATGGCTACTGCTGCATAAATCCTGCCTTCTTATTATACTGTT--GCTTCTTCATAGCTTTGGTCT-GCCATAACTCTCTGCAGTCCCATCACAGTCTCACTCTATGGGACGGTATCATTTCAGTGCACATGTCCACTGCTAGCTACTTCTTTATACCTATGTTTCCCAACTCAGATTCAAGAAGGAGAGAATCTGATTGATTTAACCCATCTTTTCTATGGT-CTTTGGGAAGGCAACCCTAATATCAGGGACCAGTTCCTGGTCCAGTCAGGAGCCATCCCTAGGTAAA-GAACAACCTAGCTCTGCTTCTC-GAGCAGGGGGCCGTGGGTGGGGCAGTTTCATATAGAAGAGGAAGTTGGGTGTGGCGGGCACTGTGTTGACATA---TCCAGTATAGGAGTGCTCCTGGGAGCCCATCTCTCATCTCTCAAAGAGATAACTTTGTGGGTTTGGATTCACCATCAGTCATTCCCAGCAGAACCC-AGCCAAATGCAGCTGGTAACTTGAAGAATTTGGAATTGCTTTTGGCCTCCATCTTCTTGGACACTCTTCCTTCTAGGACTGCTGTGGTTTTTCAGCTTATGTGTGATTGGAGTTGGCTTGCTTCTGGAAA--TCCTTCAGCTTAGATAAGTTGGCTTTTAACTGAACTGCTTCATCCTTGGGAAAAGGTAAGTATTTGGATTCAACTGGACCCAAATCCAGTTCTGGGTCATTCTGTCAACCTAGAAGA-AATGGTctgatctcttgttttcttgtctCTTATTCAAATCTACTCT-CTCCAGGCTGTCACTTACCAAAGTGTGACTTCCATTTCCAGACCCTCCTACCTACTTCTGGGGCATGACATTAAAAAGTGGCTAGTGACTTCACTGAGAGCAATTTTAGAGGAATGGTCGGGGTAGAAACCAAACAGAAGCAAGTTGAGGAAGTGG----AAATAGTGTAAGACTACTCGTCTGagaagtataaatgaaaaagagaggaagaaaacaacTATTTGCTAAGGGTTTTTTTTAGTTGTTAAAGAATT-TGTTGCCAATTA-----TATATGCTTTtataaaatagcttttaaaaaagcagaaattatGAAGAATAAACTTATCCCATT

a score=6418
s chr3            97982585 147 + 160039680 AGCTGAACATCTCCTTCCCACCCCCTGGCTGTGAGAAGCTCGTTGAAGTGGACAATGGACACAACCTTTAGACTTCCTCTGGAGAGCACATGGACAGAGAAGCAGGTGATGATGCTCTGGGTGAAGACTACCAGG-----GTTATATGGTCG
s HiC_scaffold_1 154206193 152 - 233722169 AGCTGAACATCTCCTTCCCCGCCACTGGCTGCCAGAAACTCATTGAGGTGGATGATGAACGTAAACTTCGTACGTTCTATGAGAAGCGTATGGCCACAGAAGTTGCTGCTGACTCTCTAGGAGAAGAGTGGAAGGTAAAAGTTAAACTGTCG

a score=9278
s chr3            97983560 158 + 160039680 aGAAGGGTATTCCTGGATTGACAGATATTACTGTGCCCCAAAGGTTGGGAACCAAGAGAGCCAGCAGAATCTG-AAAGTTTTCAATATCTCTGAAGAAGATGATGTCCACCAATGTGTTATCAGAAAGCCC-CAAACAAAGAAGGTCAGAAGCCCAGGGC
s HiC_scaffold_1 154207121 160 - 233722169 AGAAAGATATTCCTGGATTGACTGATACTACTGTGCCTCGGCGCCTGGGGCCCAAAAGAGCAAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTTCGCCAATATGTTGTCAGGAAGCCCTTAAACAAAGAAGGTAAAAGGAATAGTGC

a score=14450
s chr3            97989127 439 + 160039680 CTTGATTTAAGGGAGGCTCATGCCAGTGGAAGCGTCTCCACATTTCTGTGGCTGGTTTACAAGCCAACCTAGAGAATTATACCCTGGCATAAAATTAGCAGCTCTGTTTTTCAGTAAAGA-GAAACCCAGGGGCATAATTTATTATGAAAATATGGTGCAAATGAGACTTTTCTTCATGGGTTTTTTGAGTAAATATAGATCTTGGGTTGAGGAATTAG---------ACACATGAGCTCAGTGAAGTAGAGTGAACGGTATCCCCTAAGAAAAAGCT--AAGAGGTCATGATGTTCTAAAAGTGAAAAAGAAACACTTTGAATAAGTTAAATGTAAATAATTTTATCCTAACACCCACGGAGCTCAATTATGACAGAGACAAAAACAAAGAAAATTTATTATTTTAATTGAGAAAAACAACCTGGGGAAAAGCAG-------ATAATCAATGCTGTA
s HiC_scaffold_1 107829385 450 - 233722169 CTTGTTTTAAAGCAAGTTCAACTCAGTGGAAGCATCTCCAAATTACTGTAGCTGATTTACAAGCTATCCTGGAAAATTAGACCTTGGCACAAATTTAACAGCTTTGTTtcatagaaaaaaggaaatccgTGAACGTAGTATATTATGAAAATATGGTCCAagtggggtttgtttt-----gttttatgagtgAATGTAGACATTATGTTAAGATATTAGATAGTTTAAATATGTGGGCTCAATAATAGatagtgaatattattttttagGACAGGGCtacaaaaaatgattaaattttaaaagttgaaggTGAAATCTCT-AATTAATTAAACTTAAGTAATACTATTCCAGTATCAGTGGAGACAAATAATGGTAGAGAAGTCATTTAAGAgactt--gttttttaattaaataaaaacactccAGATAGAGAAGTCATATCATAATCTATATCATA

a score=39084
s chr3            97990851 3734 + 160039680 [encoded data, 4412 characters]
s HiC_scaffold_1 107830113 3964 - 233722169 [encoded data, 4412 characters]

a score=52122
s chr3            97998417 2711 + 160039680 CTGCCCACTTTCTCCTGCTTCAGCAGCTTTTATACTGATTACACACCTGCAGCTAACTCCACCCCCACATTTTGCAACACAAGAGGAAAAAAAAACAG---TCCCCAGATTGTGTTTGTGGAAGCGGCTTTCATGGCATCCTTTCAACAGGTTGGGCAATTTAAATGATGCAGTCCTC-TTGTGACTAACTCATTACCACGCTTGAGGGAAACCTGAACATCCTTAACCTACTTCTGAAATGAGAGGCAAGGAAATTATAGAAGAGGGAATAATCTGAGGGGAATGTGCT---ATCTTTGAAT----GACAGACGCTACAAGTCCTTTAGCTGAGGCCAGGGCAACTTAATAGACAAGAGC--------GCTCGAGGGAAGCCCAACAGT-TGTTTGTCTACTCATTCCTCCAGCCTGTGACTTCT-----------TTGACTTT------------------------------------------------TGAATCCTTGCATGTCTGTTCAGATGAATCACACACGGAGTGGGTTCATCTTCTATACT-----CCTG--TCGTTTCTTTCTCTCCTGCCT-CCTGCTCCCACCCTGAGTGCTGAAGCCAGGGTGATG---TTGAGCTGCAAAGCTGAAGAGGGAAGATGACTGAGCCACAGTGTCCACTTGGAACCCACAGCCAAGTCTTGGCAACTTATCCACAGTAAATCTTGCTTGCTTTCAGCTTTGCGTTGACTTTATCATCCACTCTTGTGTGCTGAGCTCTATGACAGATGTTATCTTCAGCTCTATGTGCTCATAACGCCCAGGCTAGAAGCAGAACAATGAAATACTCAAGATCTACTTTTgccagacagtggaggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctacacaaagaaaccctgtcttgaaaaaacTA-TAAAAAGAAAATAAAATTCTACTTTTTTAGGTGCCACATTGATTAGA----AAAAAATAGTTGTTTTAGTGATTCTGA----CATTGTTTTAGAAATGAACAGCATTTATATCTTGCTAAAGT--AGTTGGACATATAGTCACAACTTTGTTCTTTCTTTCTGCCCATACTT----GGTACTCTAGAGAGAGG----------------ATGAAGAAGAGGGAAGATTTTAAAAGCATTATTCTTAAGTAAGATGCAAATGAGGTATGAATATTTGACTTTTGGGTCCACAGAATTATCTCTAC----------CCTACTCAGAGGGGCCA-TGACTATGGGAATGTAGAGATAAGAATAGGTGGTGAGCCATTAGACAGTTCTTTTAATTCCCAGTCATTTGCACATTATAATATCA-----TTTTAAAGTCTTATAGATTCTTACAACATTAAACATA--TCCGTCTAA----TTCAATATAGTGGATATTTGTGGGCTGCCCTGACAAATAGGACAC-----------------------------------------------------------------CGATTTTTGTCCTTGGTTACCCACTGGCTGACGTCATTATTTTCAATTTGCTTACTTCTCCAAGATGTCTTGagtgatagaaagcagacacgctggagaattattgcagtaaaagtctaagcttcaccctctactttatgttagctt-tagaccttgaacaaatcatttcacctctgtaagtccctgagtctttatttgt----TGAAAGGAAAGATATT-------------GCTCTGAAAGAATACGATGAGATTATGTATTCAAAACATCTAGCACTTAGGAGTCACTCTGTGAATGGCTGCTCT-GCAGGAAAGTC---AGGT-------ATCATGAGGTGAGCTCATTGGCTAACCAT-----GCTTTCTAACCTCACAGGATCACTAGAGAATGAGAACACAGGCCAGTCACACAGTAACTCAAGTTCCTTTGGTGTCTGTAGTATCCGGCCAATACAGAAGTCAGCAGAGGCATGGCGGGCAGGGAGGCGTGAGAGAGGGAGAAGAAGGAAAAAAGCAGCGACAGAATCTGTTCTTTCCCTAGGCAGAGAATTTCCTGACACTCCTTCAGTAGTGGAATATG------------ATGGCTGC-----CTGCTGGAGTGTGTGCACCAAGTCAGGCTACCAAATTCTTTTCCACCCAATCTCCACACATGTTGTTCCTTAGCTCTGGG----------TAACTGTGCCTGCAAGTATTTTGCCAAA-GCAAGAAAGCGAGATGCATAACCAACTGCTCAGCTAAAAGCTGACAAGCCACTGTGTCATCAAGGAAAGAGAGAGTCATATGAAGCAAAAGAGTGACTGTGACTCCACCTTTCAGTCAGGGAGTTGTGTGTCTATGAGGTGGCAGA-CTGGCTCTTGCTTGCGGCTAAATTTCCCTTTATCGCCTCTTCTTCCCATTTGCCTGTCCACTGCTAGGTTCTAGTGCATGAGCTGGGAGCGCCTACTCAAATCATCCTGTATTGAGTATGCACGAGGTTCTTAGCATTCGTTCAATAGACCAATATTGAAAGTTTTCCATGAGAGTAACAATGATAAGAAGAGAGAGTTTAGACTTACATAAATCCCAGTACATTGGTATTATTTTTGGATGGT------------------------ATGTAGTATGTTGTGG---------------------CCAGCTATGGAGTAGCTCAGGAGGGGAACCACAAGGCAAAGGAATGCTTCACAAGAGATTAGACT------AGGCCCTGAACCAGGATTCCATAGATGAGTGAATGATGGG---------GAGGGAGAGGAAGGAAGAAAGGCATTCTGGGCAAAGAAAGAA---TATAGAGAGAGGTCAGGAGAATGTAAGTCCACAGCCTGTCTTAGG--AGTTCCTGGTAATGTGATGGCACCGGGATACAGTTTGTG--TGCTATA--GGACAGCAGCAAGAAAGGA
s HiC_scaffold_1 107837016 2803 - 233722169 CTGCCCAT------CTGCTGCAGCACTTGTTAAGCTAATTATCCTCTTGGAGGTAAGTCTTTGCTCATATTTTGCAACACAAGAAAGACAATGAAAAGGACTGCTTACAGTGTGTTTGTAGAAGCT-CTTTCATGGCACCCTTTCAATGGGTTGGGCAATTTAAAAGATGCAATTGTAATCATGACTAACTCATTAAGATGCTGGAGAAAAGCCTGAACATCCTTAACCTACTTTTGAAAAGAGAGGCAAGAAAATTACTGGAGTGGGGATAATccaagaaaaacaatttcaagTCTTTGAATCATTGACAGACTCCAGAAGTTCTTTAGCTGAGCTGAAGGTAAGataagatgagaaaacagaatgCTGCTTAAAGGAAATCCAGCAATCTCTGTATCTACTTATTCCACCTATATGTGACTTTTGCTGGTCTGTTTTGGCTTTGAAAattctcttctttgttctttcataGACTCATTAAGAATTTCCTGCTGAGTCTTTGCATTTCATCTTAGAT----CCCCAAAGCTATGTCTTCATCTCTTATACTTGACTCCTGAGTGCTTTCCTTTCCTCCGGCTTTCCTGCTGGGGTTGTGATCCCTGAAGCAGGGATGATGCTGTTGGGTTGGAAAGCTGAAGGAGGAAGATGAATGAGCTACAGTGTCCAGTTAGAAGGTACAGTCAACTCTTGGCAGCTTATTCATGGCAAAT----CTCACTTTCAGCTTCTTGTTGACTTTGTCACCCACT-TTGTGTGCTTAACTCTACAGTGGATGTTATCACTAGCTCTATTTATTCATAATGCCAAGAAATCAAGCTGAACaaagaaatattcagga-----------------------------------------------------------------aaattT------------------------------TAGGTATCAAGGTGACCAGGA------AAAAATACCTTGTC--------ACTGTTTTAATGAATATGGGTTATTGCACTCTATAGT-TCAGAGAGAGTAGATGAGGAGAAATatatgtttttttgagacagagcctcattatgtagtccaggctaggcTTTAACCCACTGCATAGGTTAGGTTGGTCACAAATTCATA-------TCAATCATCCTACATaaacctcccaagtactaggacgataggcacacaccaccatgccctgctgagAAGGAAATGTTATAGAAGTTCTTCTCTC-AGAAGGATCCAAATCACAGGTAAATATATA------GAGTTTAGAGAAGCATCTCTGCTCAGGGGTGTTCAACTGAGAGGGCCTACTAATTAAAGGAGAGTAAAGACAAGGGACACCAGTGAGTCATCAGACAGCATTTCCAATTCTGGGTCATTTTCACATTGCAGCatcaattttttcttaaattctgtaaATACCTGCACCTCTCAGCACACTTCCAAATAATTCTTTCAATTTAGTTGATA-TTATAGGCTTCCCTGGAAATCAAGACACATAGAATTTAAGTTGAGGAGGGGACTGGGAATCAAATGCAGTacctgaactgtatccccagccctaaaatttaATTCTTGCTGTGACTTTGGTTGATTGTGTAACCTTCAGTCTTTGCAGTTTCCAAAAATG----------------GCATAAAGGCTTTGGGATTACTGCAACTTGAATTCAAATCCTATCC-CTACCACCTGGCAGCTTGTTGATCTCGCACGaggtatttaatttctttgagtcTTAATATCTTTATCCATTAAATGGAGGGAAAAATACCTACCTTTTGGAAAACTTGGGAAGACT-TAATGCGATTAGATATGCAAAACATCTAGCACATATGAATCACTATGTAAATGGCTCCTCTCATAAGGATATCTGTAGGTGGTGAAAAACAGGAGACAAA------GGTTCCCGATAGGTCGTTCCACAGCTATATGGTACTCCTAGACAATG-------------------TACTAACTCAGGTCTATTTCATTTCTGCAGGATCTGGCCACTACTGAAAT------AGATAT---GTGCAGGGgtaaaagaaagagggagaacaAGAATGGCAGCAGT--CAGGATCTGT--TTTTCTTGGAGAAAGAATTTCTCGACCTTCCTTCC-CAGTAGAATAGGAAGAGGAGGTAAAGGGCCGCTACTGTTACTG--GTACATGCACCAAGCCAGGGTACCAAAATCTTTCCTGCTCA--TTCCACAGAGGTTG--CAGTGGTGCTGGATCCATTCCCCTCAACATCCCTGCAAGTATTTTTTCAAAGGCAAGAGAGGCAGCTGCATAACTGCCTGGTTCAC--AGAGCTGACAAACCACTGTGTCATC----AAAGAAAgagtcaaaagaaataaaa----agctgtgGTTCAGCTCTCCAACTGGAGAGTCAGGTGGTTGTGAGGTGGCACATTTGACTTTTGCAATTAATGAAGTTTCATTGTGTCCTCTCCTTTGCC----TACCTGCCCACAGCTTAGTTccactgtgaagacag------------taagtcATTATTTACTGAGGCTCTGTTCTGTTCTCAA-ATTCACTCAATACACTTATATGGAATATCATCTAggagaataacaaaaataataagaaagaatGTGCACTTATTACATTCCCAACACAGCAGTCACATGTTCAGCTAATTGCCAAACAGTATTTGTAATATAAATGATGTATGTAATAGAAGTGGTATATATAATAGAAACCACCTGTAGTGGGATTTAGGGGAAGAGCCACAAAGCTGAGGAATTTTACAAAGGAGATGACATTTGGCTGAGACCTTGACCTGGGATTCCATAATTGAAGGGATGATGGGCTGATGGTttagggagagg-agggaggagggcatTCAGGCAAAGGATAGAAGTTCATGCCCAGGGGTGAGGACAGC-TGAGCACACAGT---GCTCAGGGCAGTGGTTGGCGATTTGATG------------AGCATGTGCTTGCTATATGGGGCAGCAGCAGGAGAGAA

a score=12537
s chr3            98003285 481 + 160039680 TACAGAGGAGGTGATGGTTGTGCTGGGACATGTCTTTGATGAAGTAGGAAGTGAAGCCTTTTACTGGGAAGGGACAAGGAACAGAAAGAAGGAAAGGGCAGCACGGT--AAGGCCTAACTACCCTGTGGAGGGGCAGAGAGCACTGGGGAGAGGGTGACAGGGAGTTCTCATCTCTTCTCAGTAATTTGAAGTGAGGAAGGGCCCACTGCCTCATCCTTCTGACCTTGGCAATGAAAGCAGAGAGCAGGGCACTGTCTCCAGGGGTTGTCCCTTCAGTAAGGTAGAATACTTCTGAACACTGATCCCTAAGTTG--GGAGAAAGTATTTGGCATTCATGTATCAACTAACACCTGAGTATTTTGTAGATAACAACAATGTTGCATATGACATTTATGTAGCCACAAGGGAAA----ACAGAATCTATGGGTTTACTGAAGGAAGCAAGATAAAGGCTAGGAACGTGTCTGGATTATCACTCCATAGAAA
s HiC_scaffold_1 107840616 458 - 233722169 TAAAGGGGATATGATAATTAAGTTAGGAAATGTCCTCAGTGAAGCAGGAAGTGAAGCTTTTAGCTGGAA----ACAGGgaacaaaaagagggaaagagaagagtgGTACAAGGCTTGTAAATGCTACAGAGGGGCAAGTTGT---------CAGGTAGCAGGAGATTCT--TCCTGTTTCA--------AGATAAAGAAGGGCCCACCA-TTCACTCAACTTGCTTTGGCAATAGGAGCAGTATGTGGGTTATCATCTCCAAAATGTCTCTCTTCAATAAGATGCACAATTTATGTACACAGATCCCAATACTAACACAAAAAGTATTCTAGCTCTACATATCAATCAGCACAGGAATATTCTGCAGACAATACATGTGCTACATCAGGCAACTATGTAGTAACAAAGGAAAGAATATATAATACATGAGTTACCTG-AGAAAGCAAGTTAAGAACT------GTACAGAGATTACCACTTTGTACAAA

a score=51160
s chr3            98004647 3413 + 160039680 TTTAAAATAGATATCTTTATGTTTATAATTTG--TTATGGCCAAAGTAGAATGGATTCTTTATTGGGTTTATCTCCTTTTGGGTAGAGAATATTAGAAGAGAATACTTTAAAATGAAAAGTTGTAGCATCTAACCAAGCACTGAAGTCTGGGCTTCCCTGTGGCAGACACAGTAGATGGGCAAGCC------TTGCTTTAGCATTTGAGGCAGATGAACAGAAATGTAATTGCCATGCTTTAGTGGAGCACA----GAGGTCTGTGGTC-----------TCATAATGCCCTTATAAGACCTGGCTTTAGATAAGTGAATGAGGACATACTTAGTGCTCAAAAAGGTCCTCTGATCAGGGGCAGTGTTT------TAGGGTGAGCTCCTGTGGTCATGGTGCAATAGAATACAGAATAAGACAGGTGGCTTTGGCTTTCTAAGGCAGA----GACTTGTGGCCTCTGTGTCAGGTAGAAGCTGGAGgatctttggc---------------tacttctctgtgaagtgagaacaatacatacttgtaagctaaggttggagagttatacatgacaaccagctaaagtacatagt---gtgccacacaacaagtgAGTTACTGCATCAACACTGGCTGCCTGTGCCATTAAAGTCATTATTGCTAAAATCTATGAAGACTCACAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACCAATTTGGACTTCAGATATTT---------------GAATTTAGAGAGATAGCCAGAGG-----CAGCTCTCTCATTGCTGGGACGTTGCTGTGGTC----------CCCTTTGGGAGGAGAATGGGGATGTGCAAGGGGGAACTCCATGCTGGTTCTTCTTTTGCTCCTCTTCATGCTACTTCCCCGCATCTGAGCAGGTGCACGCTGCCCCAGAACAGCCTTTTACCTTCCTGT-----TCTTGCATTCTGTGTTTCTTTTCTTCAACTTTTCGTACTTCCCTTTTCTCCCCCAAACCCAAAGAGGGTAGATGACTAAGGAAC----AATTCTGTCTTCT-------TCGTGGTTGCCTTTTTTATTTGAAACTGAAAGCTATTTTCCTAATGCCAGCACTTGGAGTTTGCCTGAGTACAGCTGTGTCCACCCTACTATCTCTTTTCTTCCTTTTAATGATGCCTTTTCTccagcaggagggtggttcgatg------ggtaaaggtgcttgctgccaagtctgaagacctgagttcaatccctgggatccacatggactcttgaaggttgtcctctgacatcagcatacacacaccACACTAATCAAACAAATTAATAAAATGTGAT---AAGAATGTCTATTCTCCCAAAGATTGTTTTTAGTAAATGTCAAAAATGACAGTGACAGTCATCAGAACAGAGACAGGATAGAGTTCACTTCAGGTAACTCTGTCTTGCACAGAGGCATGGCTCTTCCCAGAGCTTTTCTGCACTCTGGTAATGCCTTCCTAGACTCAGACATAGATGTTAGTGTGAGAAACATTCTCTGTCTTGGCACCATTTGCTTTTTGATTTCTGCTTCAACCTCCAGCAGCTGTTATGAGAGGAAAAGACACACACAGGTGTGAAGGACACACAGCCGGACCAGGGAGGAGTCACAGCTCAGGGT--------------TGCCACCAGAA--CAAAGTGATTAAAAGCAAAACCAAGCTGACACCCAGGATACTTGAGTGCAAAACACCCCTCACCTGCCAAAATC-------TAACCCACTCCACCTTTGC--CAAAAATACTGGGGTGCCCCTGGTTTTACTAGAAATTCCATTTGCATGTTTATAAGCCCATTATCTCCAGGCACACATACCC-ATTTGGGTCTAGCAGTTCCCACC-CCATCTCTCTGCATACATAAGCAGACGTACATACGCACACACATACGCATACATTAGCAGACATGCACGCTGCTGGTTTGCACTTTCCCATAAAATTACTCTTTCCCTTTTTAATTAGGGTGCTTTCAGAGGC--ACCTCCGCgttaaggctgtgttcgcttccattataaatacctgttgccagCCAATAATTATCCCCTGATGAATTACTCACTCAGAAGGAGATTTTAAATGCTCATTTTTTTTTTTTAATAAACAGGGATTCCCCTTCATTACTTCTGGTGCCTCTGCTCTCAAACTTCATTAATCACTTTGGCGTTCTGCATAGTAAGAAAAATGTCCCTCTTTGCTTCAGAAGACGCAGACGTGGATCTGCACGAGTATGGAACAAAGATGATCCACACTAGAGGAGGAAAGCTGTTTGAGAACTTGGACCTCAGTGGTCAAGAGTTGCTGGGCTACTCAGGAAGGTGCAAT---------GTAAGGATGC------------------------GGGTGGAGACGATGGAATTGTC----------------TCTGTG-----------------------------------------------------------------------------------------------AACATTTCA------TCTGGAGTTGCATATCCATCTCAGTAACGAAAGCACTGATACTCATCCAATAATATCATGGGTTGATAATTATACACCTGTGGGTTTGTGATGCTCTTGAATAGGGGAGCTGTCTTGGGACACACGGGTCAGCTGTTTCTGTACGTTCCTATTTTATATTTATGTAGTGTGTGTACCCACTTAGGAAGTGAAGTGTGATATTTCTCAGTATAAAATATGTAAGAGAGGTTTTTAAGGTCAAGTGGTGCTCTGGCAAGCCTTCCTATGCT------------------------------AACATGTTAATTTT----AAGGT-CATGTGCTGCTCTGGCA--------------AAAGTTC-CATGCTAACATATTAGTT--CTCCTCGACTCTTGAGCAGCACAGGGTCC-------CCAGGTAAGCTGT---------GTTTGTCACGTAGCCTATGCCTATGAGGGAGCAACCCTCC--TAAAGGCATCTTCACA-TTGCTTTGCTTTAATACTGACTGAG---ATACCTACATTTGCAAAAGGG-AAAAGAACACCAAGACACCAAAATTATAGCAGCTTTTATTATTTGTATGCTTCATTAAGGCGGGACAGTTGGGTCTATGTTCAG-AGCCGGGTCTGATCACTGTATTGACTGACTGCTGAGTTGTTTGGCTGAACTATGCAGACCATTTCGAGGGTG---GAGTGTTTTGGTTTTGTTTCATTTCGTGGTTGtttttaagacagggtttgcctcatagtctgtgccaaaactgaacttactttgaaccttgagctttcttgcctcagcctcccaaatgctgggattacaggcctgGAAATGAGGATCTTTACTGAGAGCTTTGTTGAGGGGAGAAAAAAAATCCATTTCTGTGGGG-CTACAAACCTGAAGAAGAAATAAATTAGAGATGGCCCCGGTCTTCAAATCGTTTTCAATTAGTTGTGCTGGCCACCCTGATTCATATTGCTCAGGACGAGGACTTGAAAATACAGACGGCCTTGAAATTAATCTTAGTGCTGAGAATGGTGGAAGGGCCA---GCACCTTATCACCATTGGAGCTGTGGTGTGAGT--------------------CTGTGATGTCCACAGAGCAAGAACGGCTGGGGCTTATTTAGATTTGTATTGTCACAGAGTCAAGGAC---GTGCTCTGCAGAGTGCAAGCTCTCAAAA
s HiC_scaffold_1 107841152 3338 - 233722169 ttttaaataaat-tttttatatttataattaaaattgtgACAATAAATGAATTGGTTCGTTACCGATTTTGTCTTTCACTAGG------------------AATATTTCAAAACACCGAGTTGT-----------------------CTGATCTCCCCCGTGGCtggcagaggaaggaaaaacgtcCTTGAGTTACTCCAGGGTTGGAGGCTGACTAGCAGAAGGCTGAGTACTGTGTGCTACAGGGAGACATGAAGAGGTAGGTGGTCAAGCTCTTGTCCCCCAATAAACCTAGGAGACTTAGGTTTACAGCAATTA--GAAGAAA-GCTTAGTGCTTGACT-GGTCATCTAACAATGGATGGGATTTGATCTTTGAGGAAGGCACCAGTGGACAAGTGGTACCAGGC--CGAGGTCAATCTTGTGCACTAGGGTTGGTCAAATGGACTTAGGCTTG-AATTTTGGTGCCACAGAGAAGCTGTATGACCTTGGGCAAACTTCTCTGGTTTCAGTTCCCTGCAAAGGGCAAGTAATGTCTACTTTACAGCAAGGG----------------------------AAGTGCATAACATAGTGCCTGACATCCAGC-AGGCACTTCATCAATGCTGTGTGCAC-TATCATTACTACTGTTACCGCT--------------------------------GCTTCTGTGAATATTTGTGATAAAACTGATTTGGACTGGGGGTATGTTGAATTCTTTGGAGAGAATTCAGGGTGGGGTCCTGAGGGCtggtctttctctttctgctagGACAGGGCTGTGGGCTCACCCCAGGCCTTCAGGAAGGGCAAGGGGGATGTGCAAGGGAGAACTCCTTGTTGGTTCTTCTTTTGCT--TGTTTGGGCTACTTCCTCACTTCCACACAGGTGTGTGTTGCTCCAGAGCACCCTTTCACCTTCCTCTCTCACTCTTCTGTTCTGGTTTTCTTCTCT-CAACccttcctacttcccttttctcctcaAGCCCCAAAC--GGTAGATGAGTAGGGAACTCCACACACTGCCTTCTGTAGGTTCCAGGTTTGCCTTTTT-----GAAACTTAAACATTGTTTCCTAATTCCAGTACTTGAAGTCTACCTGG----ACCTGTGTTTACCTTTTCATTCTTTGCCTTACTTCAAA----ATTCTCTCTCCACCCA---------TCCATGCCCTTTGGTAAA------TACCCTCAA----------CTGA---CAGTC------ATCAATCTAGAGTC---AAGG--ATCCCAGGCCATAAGCATTCA---------------------ATTAAGGAAGTCTCTTTTGGAGTAACTCTATTTTGCAAAAGAGA----CCAACAAAGGTGCAAACTGTCAGTAA-------------------------------------------------------------------------AGCGCTTCTCAGCAATGAGGTGA--CCTTCCTGGACTCAGATATAAAACTCAATGTGGGAAACACTCTCTGCCTTGCCGCCATCTACTCTTTGATTCCTGCTTAGACATTCAGtga-----gtgaaagggaaggagtcAAAGAGTTGAGA--GAATGATGATTGGAGCAAAGGGCTGAGAAGGATGAGAGTATCATATTGTACAATGCTAATAgagattaaaatgattaaaaacaaaaacatggcgCTACCCTGAATATTCAGGCACAATG-ACCACTTACCTGATGAATTCAATTTCACATCCCACCCCAGAGTGACAAAAAAAATACTGACATATTTGTAGCCTTA-GAGAAACcctatttgtatatttgtatgtCCATTATCTTCAGCAACAGATACCTGGTTTGAGCCCAGCAATTACCACCTCTAACTCTTT-----------------------------------TACACACATTAGCAGACAAACACACCACTGATTTGTACTTTCCTATAAAATtactctttccctttttaattagAGTGCTTTCAGAAGTGAACCCCATCGTTAAGGCCATGTATGCTTCCTTTATAAATACCTATTACTGGCCATTAATTATCTCTGGATGAATTATTTACTTAGAAGGCGATTT--AATACTAACTTGT--------ATAAAT-GAGATTTCCCTTCATTACCTGTGATG-TTCCACTCTCGATCTCACTTAAGCATTTTGGAATTCCACATACTAAGCATATGTTCCTGTTCTGTTTCAGTGCACTTAGATAT-GATCTGCTCCTAGATGATATGaagattttctatattttaaggTGGAAATTTTGTGGGTGCCTGGATCTCACTGCTCAAGAATTTCTTGGCTAACCATGAAAGTGAAATATTGCCAGCATGGAGatgcatacctctaatcccagttcttagaaggctgaggcaaaaagattgctgTGGGTTTGGgggcagcctgtgctacatagtgcatttgaggccagtctgaactacacagagagataCTGTCacagaatttatatatatatatatatatatatatatatatatgccatagcATTTCATAAAATTTCAGAATTGTATAAACATTTCACTGACTGAAGCACTGAGACTCATCTAATAATATTGTGATTTAAC-ACTACACAGTTGTGGATTTATGGTGCTCAGCAATA----AGATGTCTTGGTACATTCAGGTCTGTCCCCTTTCTACATAAT-------TATACATGAAAAGTACACAAACATTTAGGAAGTAAAGTATAATACCTTCCAGTGtaaaaga-gcaaaggaaaaattTCAAGTCAAGTGGTGCTAAAgtgaacattcttttttttttttttgtggtaccggggatggaactcacaaccttgcacttgccaggaaggtgcttatgctgctcagctaaatccccagcccctaaagtgcACATTCTTATACAAAATTTTCTTGCTTATCTCCTGAGTAGCAGAGGATTTTGAATTACTAGTTAAACTTTATACATATCATTTGTCATTTACTATGTACACATGAGAAATAAATCCTTATGTAATAACAAAGTtacattttccttcctttaacATTCATTAAATGTAGATATGCATGTGTGAAAGGGTAAAAATATATCAAGGAGCCAAAATGACAGCTATTTATGTTA----CGTGCTTAATCAGAGC-AGACCATTGGGTCTATGCTCAGTGGAAGGGTC------------TAGCTGGCTTCTCA-----TTCTCAGAGCTAGACTGA--ATCTTGAGGGAGCTCCTGCCTTTTGGATTTAATCCTCTGTTTGGCTGAATTT-------------------------------TGCTGAACTT----------------------------------------CTGG---------------AATATGTATCTTTGTTGAACTCTTACTCGACTCAAGACAAAGAACCAACTATTGTGGAGTTTACAAAGATGAA----AGATGGATGGGAGA----CCTTGTCTTTACACTATTTTGTATCAGTTATGTCAGCCACTCAG-TTCCTAT--CTTGGGGAATGGAT---GAAATATTACTGGCCTTGAAATTAATCATAGTGTTCTTTACTTTCCCATGGCCATGTGCTTTTTATCTCTGTTGAGGTTATATTATCGTTTGGAGGCCTCCCTCAATGCACTGTGTTCTCTAGAGAGCAGA---GGCTGTGTCTTCTAGAAGTCTGTATTGCCATAGAGTCAAGGACACAGTAGTCTGCACGGTG-AGGTTCTCAAAA

a score=24333
s chr3            98012557 1103 + 160039680 CTTATGCAATTCCTCGTAGTTGCCAATTTCG-----TTCTACAAATGCATTTATTCCTAAGACAGATCACACCCTCCACTCTCCCACTTTGGAAATTGTTAGTGTAATAGCTTTAT----------CTTTTAAAAACTATGCACACAAACGTCCATACAATGTTCAGTGTTGTTTGGAAACATTTA----TATGTAAATGGCATTCTTAGAGTCTCGCTCTGCGATTCGTGTTTTCATCATCATTTTGGTTTTAC------------GGCTGACGTATATGAAGATGGTATTTTCAATTGT---ATTGCACTT-ATAATTATGCATTATTCATCTAGT-CCCTAAGGGTGGGGCATTTAGGTTACTCTTCACTCGCAGCTATTAATAGGTTATAAAGAGTATTCCTGGTTCTTCTTTCTATTTTCTACACCTTTGACTAGAGTTTCAAGCTC-CTGCTGTCTCTTGAAAGCCTCCCCTAAATTCTTCTAGACCCTAG-AGCGG------------------ACGATTCCAGTGTCCC-AAGCACCTTGCTACACGAAGT--------------TCACTAAAAGAACCA-AggatgggtgggtggatggacggatgaatgaacgaaATGCCCAGAGCATCTTAAGGAATG----TCCTCTTAAGAGTACTTTGGCGCCTTTGCCCTCTGCCTTCCGTTGACAGTCTCGTTTTTGCTCTCCCTCATTCCTCTAACCAGCCAAGAAGTGTGTGGGTGGGTGTGTGGGGCATGAGGTCTGCCTCTCTCTACAAGTTCAGGACCCGGGTAAACCCTAGTGTTTGATGTTGG-------GCGCTTCA-GCCGCCCCCCTTTCCGAGCTCATGGGCGGGCTC--------GGCGGTCGAGCGGGCGGAGTACGGGG---------------TGCTGCTCACTC-----AGATCCCTCCGCGCGCAG--AGGACCGGCGCTTCTTTCTGCGGGAAACCCCTGGGCGC----GCGGC-------------GGCGAC-GGGGGCGGAGCCTCGCGGTGGGAGGA---GGCCGAGGC-GGAAGGACACGCG-GGCCGCCCAGCCGCGCGGCGCAGCCAGAAACTTTCAGCCAAACTTCGGGCGGCGGCCTGGCTGCG--CGGAGTGCAGGGGCGGCGC------------------AGCGGGAG-------CTCCAGGACTCAGCGAGCCGCGGGGGCAGGGTAGAGCACGCGAGAGCCGGGCTCCT-GGTCGGGACCC
s HiC_scaffold_1 107849427 1222 - 233722169 CCTACCCAACTTGTAGTCACTGTTAATTTTAGGTTTTCCTACAAACCTTCTTGTAACCAGGCCAGATCATATCC-CCATTCTCCTGCCCTAGAA---------GTAATCGCTATTTAGTTGGTGTCCTTTTA-----CATGCACATCTGCATCCACA-AATAATaggttgttttaaaaaaagcttaGACATACACAAATGGCATAATTA-----CCTCCCTGCAATTAGTTTTT----CACTATTcttatttttcaagatttatcctgatcaacataaatgaagaaagtCCTTTCAGTTGCTGCATTGCACTTTATAAGTATGTATTATGCATTTAGTACCCTTAGAGCGGG-CGTTTATGTTATTCCCACTTTCCAGCTATTGTAATGTTACACTGAATATCCTTAGCTCGTCTTCACATTTTGTTGACCTTTTAAGATCCTTTTAAGATCACAGCCGCTCCATGAAACCCTTACCTGAATCCC-CTAGCCCGCAGCAGAGGTCTTAGTACATCTTATTTATTACTTCTCTGTCCCCAAACATGCTGCCACACAAAGTAAGGCACTTAAGATTTGCTAAGCGTActacagaatgaatgaatgaatgaatgcatgaatgaagaCTGACCCCCCTCCCCCCAGTAGACTGCTCTTTCTTTTAAGTGGACTTGAGC-------CCTTATTTCCTTCTTTGACAGCACTGGTCCTTCTCTACCACATTCTTCTGCCTAGCAAGGGAATGTGTCAAAGTGTG---GAGGCACAAGGTCTACCTCTTCCTGCAAGTTCAGGATCCCGGCAGACCATAGTGTTTAAAGTTCAGAGGCTTGCGCTACAGGACACGGCCCAGCCGGGGCTCCCGCGCGGACCCGGGGCAGGGGCGTCTGAGGCGGCGCGGCTTGGGGAGGCTTGGGGGGCCAGGGTGAACACCCGTAGTAGATCCCTCCGCGCGGAGCTCGGGCCGGCGCTTCTTCCTGCGGGAAACCCCTGGGTGCCCGGGCGGCGCGGCCGGGGCCGGGCGACAGGGGGCGGGGCCTTGCGGTGGGAGGAGGCGGCCGAGGCGGGAAGGACACACGAGGCTGCTTCGCTGCACACC----CGAGAAAGTTTCAGCCAAACTTCGGGCGGCGGCCGGCGAGCGGCCGAGTCGCGGGGGCGGCCTTCGAGGCGTGCACGTCTGAGCGGGGGGACGCATCGCCGGGGTCT--CGAGACGCAGCGGTAGAAGGGAGAA---GACCGCGGGGTTTCTGGGTCGGGACCC

a score=74087
s chr3            98014033 4432 + 160039680 [encoded data, 5636 characters]
s HiC_scaffold_1 107851422 5202 - 233722169 [encoded data, 5636 characters]

a score=44328
s chr3            98018998 3870 + 160039680 [encoded data, 4497 characters]
s HiC_scaffold_1 107856738 3925 - 233722169 [encoded data, 4497 characters]

a score=119113
s chr3            98023901 6528 + 160039680 [encoded data, 7469 characters]
s HiC_scaffold_1 107860606 6798 - 233722169 [encoded data, 7469 characters]

a score=59910
s chr3            98031148 4026 + 160039680 [encoded data, 4601 characters]
s HiC_scaffold_1 107867815 4150 - 233722169 [encoded data, 4601 characters]

a score=32791
s chr3            98035162 1388 + 160039680 AGTGGGTCCTGTAGAGATGCTAGTGAGTGAGCCCAG-----TTCA---TCTCTACGTTTTCCTGGCCTGTCATATTCTCTGAAGGGC----GTGCATATCCTACCGTGTGGAGTGTTGGGGTGAAA-ACTTTAAAAC-----AGTATACCCCAAGAAAAACATTCTTTT-----------------GAGCCTGCCTGCCAGTGTGTGCACA-------------------GTCTTAGGAAG-------------------------------GCTTAA---------TTTTAGACCAt--------------tctaacgtttcctccagcttcccagtggagggtcttgcacctccccc--catacccttccaggatacacatacttcattttgcagaccactgATCCAGAAGGTAAATTGAAGAGTTTAATGCCAAAGCTGTTGGCTCTTTCGTTAACTAGATTATCTTTTA-CTCCCAGTGTTCCTAATGCCCTTCTGCAAAGTAGCTTTTGTGAATGACTGCATGAATTGAGAGGCTACATTTTTGAGGTGGAAAAGATGAGGATAGAGCATGCACGTGAATTAAGTTGAATCTGTTGTTGCCAGAATACTGTTTTTGATTTTGGAAAAGGAGAACCAACAGCTCTCCCTGTAACAGTCTGGGTTGGTG----------------TTTGGTGTGATTAAGTCTCTCCTTCATATCGTGGTGACTAGCC-TGGCTCATGATCCAGAGTTAGAGCTTGGTAAATGTTTATTGA--------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAAATCAGCCTACTT--------GAGAGTAAGCTAGAAGTGACAGAGTAATAAAATGGGTGATACATCATCTGAGGGCCCTACTGAAGGCTGCTAGCATCGTGCAACGGTTGTAGATTCTCCGTCGGCCTTTCTGTGGG----CCCAAAGTGGAGCAGGGC-------------ATAAGAAAAATAGACATTAGAGGAAAAACTTGCATTTCAGCGTTTGGAAGCTCAGCAATGTGGGGATTATCAGAGGCCGTGGGACACCGAGCAGAAGCAACAAAAGATTATTTT-GGTATTGGAAGAATTTTCATTTTTGTGATAGAGCAGG---------------TTACCATTTGAGATA------TAAAAAGCAGAATGGAA--------------CTGGCTGGCTGTAAGGTAGAAGCAGACAGACTCACAGACATGGGTGCAGTGTACGTAGACGTTT-TGGGCATTTCTTCAACCATAGACATGCCAGTCTGTTCAGTGTTAGGGCTGTTTAGCTTATTAATGTCACTGGAAAAACGAGTTAGAC------TGTGTGCTGAGGAGGCCCAGTGAGCAGTGTCCT-----AGCCTGGGACAGCGCATGAGCGAGGTCTTCCCAGTGCTGTGGTTTTCCTCCAGCTGAGTAAAGACAGCTGCT-CCTCAGAC-TGGGGCTTGGCTGCACAATAAGAAGGCACCC-TTTGCGATTCTTCTTGGTTGTCCCCTCCCACCCCCAACCCTTTTGTGCTGATACTTTTCAAAACTCTTTGTTTTTAGTTTCCTCAGATTTTTGTCATTGAATTTCTTGAA
s HiC_scaffold_1 107872558 1672 - 233722169 AGTGAGTATAATAAAGA-GCCGGGGAGTTAGATCAGGTttattcagtttctttgcattttattggTGTACTGTGTGCTATCAAGGGTATATGTGTATATCCTAGTTTGTGAACCATTGGAGGAAAGGACCTCCAGACTTAAAAGTATGACccaggaaaaacatttttttttttttttttttgagcagagACTCTCTTCAAGTAGGTAAATAAGTATTTGTAAATAAACATGTCTTGTGCAGCcaataaactatatatatatatatatcttagtcTTAAATATGTGTTTTTTAGACTATAAATATGTAGGTGTTCTAAAATTTCTAATGGCATCCCTGTGAATGATCTTGCACTTCCCCCATCATG-------GGTATACACACACCTCATTTTGCAGACCACTGATCCAGAAGGTGAATTGAACAGTTTAATGCCAAAACCATCCGTTCTTTCATTAAATAGGTTATCTTCAAGCTCATAGTGTTTCTAATTTCCCTTCGTGAAATAGTTTTTGC-AATAGTGCTTTGAattaacaaac--atttttttaGGTGGAAAAGATAAGGATAGA--ATGTGTGTGAATTAGGTTGACTCTCTTTGAGAAAGAAtactatttttgattttgaataaGGAGACTTAAAAGCCTTCTCTTTTGTGGTCTGGGTTGGTGTAAGTAAAATCCTTGTTGTGATGTCATTAAGCCTTCCCTTCCCACCATTATAGTGAACTACAGTTCATAATACAGAGTTAGGGATtggtaaatatttactgattttttttttttttttttaatttgagacggggtctcgctatgcagttcaggctggccttgagctcactttgtagcccaggctggtctcgaactcacaacaatcctcccacctctgcctcccaaggtatttactgagttttaaaaaaaagtctttcaacCTTAATTAGAGAGACCAAGCTAGAAAGAATAGAGTGA-------------------------GACCCTATAGCATGGTACTGGTAGCATGCAAGGACTGTGGATTTGTTGT-GAGTTTTCTGCAGAATCTCCCCAAGTTGAGCAGGACCATGtacctcaaaataaagaaaattaatttgacagttta---tttcatttcaaaatttggCAGCCCAGGATTATGAGGATTAGCTAAGACATGGGCATACTgaacaaatatagtgaaaaattattttagatattagaagaatttccatttttataatgaaatagaaagggaagccaTTGTCCATCTTTTGTGGTAAGACTCTGCAGAGCAAATtagggagaggaaaaaaattctctttgGCTACAA-GTAGAA-TAGACAAACTCCAGGGCATGTGTACTACATATGTGggtatttccaaatattttttcagtCATGAGAATGCAAATCATTTCAATATTAGAGTAGCTCAGCGTATTACTGTTACAGGAAAAACAAGTTAAACCAAGTATGTGTTGTACCGAGGCTGAGTCAACAGTGTCATTTCAATGTAAAGGAGAGTGCATT-GAGAGTTATTCCAAGTCCTGTGGTTTTCCTCCAGCTGAGCAAAGACAGCTGTTACTTCAGAAGTGAGGCTTAGATGCACAAAAAGAAGTTgcctgtttgctttctgttttgactatacccttt---------tttttttggcttgagGCTATTCCAATACCTGTTTTCTT------CTTAGATTTCtggttttagatattttaaa

a score=50888
s chr3            98037147 2394 + 160039680 TATTTTATACAGTTTTAAAGTAGTGCAGACATGAAATAAGGTGACACTTTG-GGGACAACATA------TGAAAATGTAATGTA--CTTTTGTCTTTGGAAGACTAGGGTCTGGGGTCTGAGCCATGTGGAAAGAATG-----AGCTAAC-----------------GACTCTTGCAGCACCGAGGGCATGCGGCAGAATTGCTTATTTCCTGCCTTGGGAAGTTAGGCTGC---TCTCTGCTGTCTCTGTTGATTCTTTT-AATTGGACAGAAGCTGAGCAGATGAAGAAAATCCCCAGCTTCCTATGGC-CTTTTGGTTCACCGCATCAGTCATTACCCACCCTCTACAG--AGCATGCCACGCTTTTTCCTGGTGAGTGCTCCGTCTTCATTAGCTTCGTTTGCAGATGTGTTTTTTATTTTGGAGGTATTTCTATCTAACTGTTTGAACTGTGGATTCTTTGTCCCAGTGAGGGTGA-CTGTCCCCGTC--ACTAGGCTCACCATCTGTAAGAGTAAATTCCTGTCAAAGTGAGGTGTGGTCAGTCGTT----CCTGAGTTCCAGTTCT--GACTCCTGGGTGTTCTCTTCCTTCC-CCATGCTGTTCTGTTATTGAGAAGAAATGCTGTCTAGCTACAGTCT----------------------------GATTATCAACAACTTCAGCCTCTCCCCTGCTGCTTTCAACTCCATATAGTACCCTGTTTTGTTTTGTTTCCCAGGCTGGAAAGC-------------------CTGGGATTGC--------------------TGTGGAGGTCGGTGATGGTGAAGTGTGTGTCTTCATAGGGCTTGACTGTCCAGGGTGGGTCTGGA----ACACAGCACTG-TAGCCTCTCCTGTCCTAGGAGCTCAGGCCT------ACTTTCACAAGCATGTGGGCTTTGGCAGAGGT---------GTTCTTCATATGCATGG---CTAATATGTAAGTGGCTGTCTATTTGACGAGACTGTTGTATCGCAAATG-GTATTAATGCAAGTTTGTTGTT---------------GTTGTTTTGTATCTA---ATACAGGATTGGTAGATTAACAAAACAAAA------CAAATCTAAAATActgcattctagccttggtttggagtctccatctgtatggctataggcaagtctgttattt---ttaaaattctttcctcttttgcaaagtggagctaatatcaatttgtatgccttgccag--gttgtagggattaaagga-----tttgtatgaagacacctagcTGGCCGAGACAGTACTTTATTGTAGC------------------------------CGTGCATTTCTAGAGC-------------------------------------------------------------------------------TGGGTGGAGAG------------------------TCCTTGCCTGTGAGGAGCTGGGCCGTCCGTCGTAAATACTCTGTACAGGGCTGCTGTCTATGGTCT-GTGTTGCTCCCTGGTGCTCAGTCAACGCCAGCTTCAGCTGTTGTTGGAGTGGGTGCCTTTGACCCTCTAGCTATATGGCTTGGGATGCAGTTAGATCATTTCTGAAGTTCATGTCCTCAGAGTTCCTCCCTGAGA--------CCTCCAGTAG----CAGGGTTGGGATTG-----TTTTCTGCTCAGATCCGTGAGATAGGCTGGAGCCCACCGTGCTCAAAAGTCATAATCTTGCCAACATTATAAATTTAGCAGGCCGAAAACCAGGCCACATTGCAGGGGCAG--GTAGGAGCT--AGAGACTTGGTTTGaattttttttttttttttaactataaaaCGTAGAGTATTTGAGACTTTCCACGGAGACATAC--TCGGGCGCATAGCCAAAGTGGTTACAATACCCTGGTTTTAATATTGTCGGTGAGGTAATCGTGTGTTG---------GGAGAGGGGATGCTTGTTTCCTCTCTGGCACTCCACCAA--ACCCCAC-CACTGACTCCTTTGTCCCT-----TGAACCTAGGCTTACTTGTACCAGTACCGGCTTTTCCAAAGGATTTGACCCTGGTAATGAGATGAGGTGATGGGAAGGCAGGCCCCAGCCCTGGGCATGGACTGGTGTAACTGGTAAACTCCCTCTTAAATCCCTCTGTTCAACAGGCCTCTCGCTCCCATGTCCTC--AGTGGGGTGAATTGTTCTCGAGGAGAGAATTTTAAGAGTGATAAACAAGAGGGATTAAAATGTCCCCTCCACCAGGTCTCTGTGTCCTTATAAAAGGCTATAATAAACTGTCATTTTGCAGGTTTTCCTTGTGCTTTGTGGGCAATTAAGGCCTTGTTTATCATTCTCTTGGTGGGAGATAGAAAATTACTGGTCTCTCCATTCCTTGGGCAGTCCAGCTTAGCAACCATTTCCCAAGCATTGATTGTATGTGTGCCTGTCCTCACAGCTGAGCTGAGTGATGTAGGTGG-AGCAGAAAGGGCTTGTGTTTGTTGCCTTAGTCCTAGAACCCACAAGCTTCTGGAACTCTCTTCAGCTCCGAATAGAAGGAATGCCAAGGAAGATGA-ATGGGAGTTGACCCCGAGTTCACT--CTTCTGGATCCTTGAGCTCCCTCAGGACTTGTTAATGACG-AGCggggggggggggggggaggtaggggggtgatgga
s HiC_scaffold_1 107874375 2582 - 233722169 TATTTTCTACAGTTCTTTAGTAGTGTGGCCGTGAAGTAAGGTAGTGGTTTATGGGACAACATGCCAAACTAATAATAAAACTTAACCTTTTGACCTTGGATGTCAGGAGCGTGTGTTCTG-GTATTATGGAAAGAGTGTTGAGAGCTACCCTAAGTTTTCTTCTTGGGATTCTACCATCATTAAGGGTATGTGTCAGGCTAGCTAATTTCTTGGTTTGGGAAGGTAGGTTTTGAATTTTTACTGTCTCACTTGATTCTTTTTAATTGGA---GAGCAGAccagatgaagaaaatattttatctcttaAGGCATTTTTGGTTTACCACATTAGTCATTACCCGCCTTCTGTGAGTAGCAGGCCACACTTTT-CCTGTTCAGTGGTTCAGTTT--TTGACTGCACT-GCAGATACAGTCTTCA-----GAGGGATTTATTTCTAATCAGTTGAATTATGGATGCTTTGATCAAATGATGATGGTCTGCCTCTTTTTAATGGGGGTCATGACTTTTAAGAGTAAAATCTTGTCAAGATAAAGTATGATCAAT-GTTATGACCTGA---CCGCTTCCCCAACTCCATCAATTTCTCTGGCTTCTGTAATGCTAGTCTATTATGGGGAAGAAATGGTGTCTGGTTACAGTTTTGGCAAAcgaacaagcaagcaaacaaacaactcTATATAGTTGTAGCCATTC----------TTTTACTTCCCATGGTagttgattttgttgttttttccct-CTGGAAATCTATAGTAATGTATCAAATCCTGAAGTTGCCATGTTTTCAGCAGAAGGCTTCTGGGGGTCAGTGA-------------------GTAGGGCCTATCTGTCAAAGGCAGCTCCCGACAAGGGACAACACTGGTGGCCCCTCTTGTTCTGGGAGTTTAGTCCTGGTGTTATTTTGACAAGCATGGGATCATTAGCTGATACTTGGCATAAATTTTTCATATGCATGGGTTTTGATAAGCTGGTGGTTATCTGTTTGAAG---CTGTTATA-----AATGTGTATTA-TAGAAGTTTGCAGGTTATAGTAGATAGAAgatttttctgtctctatctatATACATGTAGTGAGTAAAAGAAGTACAGGGCCAGTAGATAAAAAATTGTGCAAT---ACCTTGATTTA-------------TATGCCTTTGGGCAAATCCTTTCTTTGAGTTATAGTTTCATCTTCTAT-ATAAAATGATGCTAATACCAATTTGCATGCCTGATAAGTTGTTGTGGGGATCACATAAGATCCTGTTTGTGAAGATGTTTGGTAAGCTGTGAAGGTACTTTATAATAGCACTGTCTTTGACCAGTTGATCAGTATGTGGTGCGCCTTCTCAGGACAACCCTCATAAATTGGGTGTTGTGAACTTTGTGGTCTGCTGGGCCATGGTGTTCACATAGGCTGTGATGCTTTCAGGTTTGGGTGGAGAAGTATGACTGAAAATCAGCTAAACATCCCTGCCCATTAGAAGCAAGGAAGCAGGTCTCAAATATT-TGTAT-GGAATGCTGTCCATGGCCTTGCTTTTCTTCACAGTGTCTAGTCAACACCCACTCCATCT--TGGTGTAGATTGTGCC-----------AGCCATGTCATTTAGGGTTTGGCTGG-CAGTTTGTGAAATTCCTTT------GGTTACTCTTTGAaggtatcatgtcttctgcaggTTACTGCTTTTAGGTTACTGTATTTTCTGTGCAGGTGAGTGGGCACTACGTAGACTCACTGTGTTCAAA---------TTTACAAACTTGTTTTATGTAGCAGCTCTAAAACCAGATTACATTT--GGTGCGGTCGTAGAAGATGCAGATACTTGgttca-------ctatttttttaaaatgtaaaagttacAGAATTTGAGACTTGGTATGGTGACATATGTTCTGGTTCATAGCCAAGATGATTACAATGCCatggttttaatattttcagtgaGGTAAT-GTGTGCTGtagtggggaggaggagaaatg-TTATTTAATCACCAGCACTACACTAATAACCGCATTCACTGGATCTTTTGTCCCTCTGCTTGAACTGAGG-TTACTTGCTCTAATACTGG-TTTTCCAAAGGACTTAATCCTGGTAATGCGATGAGGTGATCGTGGGACGGACGTTCCCACTGGAGCTGGAGTGGTGTAACTGGTAAAACCCTCTGTAAATCTCT-TGTTCAGAGTGAGTGTCGCGCCCATGTCTCCAAAGTGGAGTAAATTTTTACTGAGGAGATAATTTTAAGAGTGATgaacaaagcagattaaaatatctcctctgccaggccattGTTACCT--TGAAAAGCTAGAATAAAC--TCATTTTGCAGGTTTTCTTTTTGTCGTGTGGGAAATTAAGTACTTGTTTATCATTCTCTTG--------------------------TCTGTTGCTTCAACAGTGCAGCTTGGCAGACATTTTCCAAGCACTG---GACCATGTGCCTGGCCTCATGTTTGGGT----TGACGCCAGCGGAAGCAGACATGGCTTGTGTTG-----CCTAATTCCAGAATCTGTATTTTTCTGGAGCTC-CCTCAGCTCC-AAGAGGAGCAACAGCACAACAGATGAGATGAGGGTAGGCCATGGCatctgtggcttttttttttttaa--tccttcaaGG--GGTTTATGACTCATCATGGGAGGGTAGAGGAAAGCACTGGGGTTAAGAA

a score=25345
s chr3            98039812 1038 + 160039680 TGTTGATATGAGTTGATTTC------TGTGTGAGGAAACAGCTGAGGAGAA----CTGAGAAGTAAGACTAGGGATGGAAGGGCCGGGCTGTGCCCCTTGCAC------CATCTTCATGTGCACTACAGAGTGGGTGTCTGCCTGCTGG----CTCCCTCTGGTCCCCAGATTTGGGCCCTGGG--TGTACTGTGCA--------------TCCCCCATCTCCACGGTTA-----CTTTTCTGACTGCA--AGTCTCTGTGCTGATTTGGAGTGTCAGATATAGGCAGGCCAGGGACTTAGGACCTTTGGAGGTTCTTGGACTTAGACAATTCTCAGTGACGTG-TGCAGGAATGCTGGGCTTGAATACC---ATGCACGGGTGAGTGGGGTTCATTTGGTGCCGTAGGTATCGAGCATCTGGGACCGAGATG--------ACCATGTAGCTG-----------------------CCGACTTGCACACTTCAGAGCATAT--CGTTGAACTCTGTG----------------GTGTC-ACCATTTGCACAGCAGCTGC-----GGTATTCCGGTGACTCCTGCCCAGCCTGGTTCTTGTGAATAGCCCCTGTTCCTACCACACAAGGGT-GTTTTTGAAAAAGACCATGAGGATGGACGCTGGTCAGGAAATCTGAGACTAGTCTCTGGATTTTCCCTGCTTGGTTTTGGGAAGTTGCCATATTTT---GTGATAGCATTTAACAATCACAGGAttttgttttgttttgttttgttttttttCCTTTTTAATATAACATTGTGTCTTAGACTTTTTTGAAATCTACCTCTGGATGAACAAA-CACTAGACATTGTCTTCTTCACTTAAAAAGCA--CCAAGAAGTTTAAGCTAAAAGACATTCTGCTTCTTTTGGGGGGAGGGTAGCAAG---AAAATTATATATACTTATAATTTTTT-------------CCAGTAAGGGTACTTAAAAGCTTCTATTTAAAATTATGGGGTTTAAAAACT-TTAAGTTGTACTTAAAATACTTTTTTTTTTAAATATCTTTTAATAGAGAGGGCTTACTAAAAGAACAGGGAATTGTTGGCAGGCAGAATTTGTCTTGATAAGAGGACAGATAGAGGTAGTACGACAGATCAGCTAGAAG
s HiC_scaffold_1 107878215 1123 - 233722169 TATTGGTATGGATTGACATAGATGggtgtttaaagaaaaatattaaaagaaaaaattgaaaaacaaaactaaaaatttaagc-TTGGGGTGAACCTCATGTATTCCTCTCCCCTTAGTATTTA--ATAGATTTCATATTTTCCTGCTGTTTGCCTTCCTCTATTCCTAGGTTTTTGGCCTTAGGCATGTTCTCTGGAAATGGGAATGAAATGCACTTATCTCTGGgtttagatattttcttttacagtacTAGTTTCTATGCTGATTTAATGTGTCCTAAGTATG--AGCTGAGGGTTTAGGAACCTTTGAGGCTCTCAGCTTTAAACACTTCTCAGTGACATACTGCAGGAATGTTAGG-TTGAATACAGAGATGGACTGTTGAGT--------TTTGG-GACGTAGGTATAGAGCCTCTATGACCCAGGTAGTATAGCAACAACCCAGGTGTTAGGACTTTAGTTTCTGCACATCTGACTTGAACAGTCAACTGCACCTGAAGTTGGTCTTTTTATGGATAGTCCGATCTCGTATCCACCCTTTGCATAGTACATTCATCTTGGCATTCTAGTGAATCCCCTTAATCTTTGTTCTTGCGAGTAGCCTTCATTACTACCACCCAAGAGTTGTTGTTAAAAGATGGTAGGAGAA-GGATGCTCATGGGGAAATTGGGGACTGTTTTCAGGATACTCCCTGTTTGACTCAGGGAAGTCTCCATGATTTCATACAATAACTtgtaacaatcacaca-----------------ttttttccatttccacTTTAACATAGCTCTGTTCCTTATTCTTTTTGAATGTCTACCTCTAAATTAACAAAATACCAGAAGTTGTCCCCTCCACTTAAAAAGTTTTCTGAATAATTTAAACTAgaaga-atacttttttttcttttgggtgagTAGCAAgggaaaaatattatatatatatatttatttatttaaaaatatacttaaaagcATACCTAAAAGCATCTATTTAAAATTAAGGGCTTTAAAAGATACTAAGTTGTACTTAACAAAATAgttttt--agaaagttttaaaaagggaGGGCCTACTAAAAGCACAGGAAATTGGTAACAGCCAAAATTTGTCTTGATAAGAGAACAGACAGCGTTA-----ACAGAATAGGCAGAAG

a score=83705
s chr3            98042282 6898 + 160039680 [encoded data, 7522 characters]
s HiC_scaffold_1 107880533 6567 - 233722169 [encoded data, 7522 characters]

a score=14884
s chr3            98044946 395 + 160039680 caggcgcctctgatgcatattgaagtttgaaaacTGTGACTGGGGAAATGTTAAAGGTTCAAGGTAGTAGAATCCCAGAAACCAGCCAAGTGGCATTAATTATTAGCCTGGGGTGCCCACCtttttttttttttttttttttGGTCACTGACTTGGATTGGTTCTCTAAAGCAAGGCTGTAAAGTTATTTGCTAGGTAGATAGGCACATATTGACTCT-AGGTTGTGTGTA-TTCTATGAATCTGTCACTGTGATTATTTGCCAGGACACCTAGTAGGAACAGGCTGTGATTTTTTTTTTTTTCCTCTCCCTGCCCACAG------CTGAGTCATGGGTGGCTGGGGTCCTTCTGCTCTCCTGGATAAATTTCTCTTTGTATTCTGCCTATT-TTTATGTACTT
s HiC_scaffold_1 107883793 372 - 233722169 CAGGTGATTCTAATTTGTACTAAAGTTTGAGAACCATGGCCTTGTAAATGGTAAAGGTTCAAGGTAGCATGATCCCACAAATCACCCAAATATCATTAATTATTAGCCTGGTAAGCCTACC-------------TCCTTTTCAGTCACTGAATTGGATTGGTTCACTAAAGCTAGGCTGAAAAGTTATTTGCTAGG----TTGTCACATACTATTTTTAAGattgtttgtatttctctgaACCTGTCAC--TAATGATTTGCCAGGGCACTTAATAGGAATAGG-----------GCCTCCCTCCCTTACCCTCCTTCAGGGCTTCCTGAGTCA-AAGTGGC-GGGGTCCTTCTGTTCCTTTGGATAGCTTCCTGCAGGTATAGGGCATGCCATTTGTGTACTT

a score=98793
s chr3            98050689 5293 + 160039680 [encoded data, 5774 characters]
s HiC_scaffold_1 107887797 5097 - 233722169 [encoded data, 5774 characters]

a score=47940
s chr3            98056314 1730 + 160039680 CAAAAGCCCCAAATATGTCTCCATCTTGGCTGCT-TTTTCTGTCTAAATTCTAGTTCATGTAATGTTTCACTGAACCAGTGTGTGGACCAGTCAGGTTTCA-AGCGACAGTTAAGTGGTTTGGACAAACATCCCTTGAGCACATGTTAGCAATGAGC------GTGTGGAGGTGGAGTGGCCAGCGTGAGAGGCTGGGGAAA--GGGCCCAGGCACAGGAAGAGAGGGCAGCTGGCAGCAATTACCTTCCTTCC-CTGGACTTTCTGAC---------------TCATTGTGTTGCTAGACAGAGTAGCCAGGTAGCTTGTGGCT-----------GGAAACTCGGAGTTCAAGAATCTCAGAAGCCAAGAAAAAGTTTGGGTAGAGGGAGTGAAACAAGAGCAGAGACA----GTGCCTGGGCGCTATGCGCGGGCTCC--------CTCTGTTAGCCAAGAGGCTAGGTATCTCACAGTCA--TGTCTTCTGCCCAGCATCTCACTGGCCAGGTTCAATTCATCTTAGGAATTCGGAGTGAGTGGGTATCTGTTAGCCAAGTCTTGGGTTACCCCAAATTAGCTCATGTCCTTTACTGCTTGTTTCCTCTAATTATATAGTACATATCCAAACCCCCAATTATCCAGAATAGACCAGG-CTGCCTGCTCCGCGTGGAAAACATTTGACAGTGGTTATGATTTTCTTGCCTAGACCTTGGCAGTGCCTTCGTCCCTCAACCTCCTGGCCC-TTTAAGATTGTGAAACCCTGGTGCTTGTGTAAGTCAGGCACATCTCCTTGAGGAATTTCTTCACTGGGCAGCTTGCCCCTTT-GAAACCTTAGTCATTCTGAGCAGTACCCAAAGAACCTTCTCGACTCTAA--TTTTTCTGCCACGGCCCTATTTGTATATAATATTTGTGGTGTCTGACTCTTGGTCTCTTATTGCCGAAACTTATGGTTGTGAATGTCTAGGTCACTCCTTAAAACCGGACAGCCCTTGATTACTAAAG-AAAGGTGACTCATTTCCTTCCAGGCAAAGACTGGCACTGACTGTCAGAGTCCTAAGTTTGTATCTACACACAGTTCAGTGATGCGCTTCACATAGCCCTTCTAAGTTGTTATTGGTGGTGGtttgttttagagacaagatctctctccttaaccttctctctccttaaccttgcctggaacttactatgtagagtaagcaggctttgaactcaaagagatccatctgtttctgcctctgctgggattaaaggcttgtaccaccacacctggctCCTCCGGTTTTATTGGAGGTAATGACAACATCACTGTGACCTGGGGAGGGAGCAGGAGAGGCCCTCATGCTGAGTTGAAG-GGATGTCTGAAAATGAGTTCTGGAGAAAGGCCTTCCCCAGATTTACCTAAG-GGTTGATTCCCTGTGAG---GGGTT----------CTTCCCAGACCACTGTCTCTCGCACACATGT-CAGCCATTAAAAT----GTCTCCTGTAACTTACCTGTAAGGC--------------TTGAGATGTCTGCTGCCGTGTCATTCTGTGCTGAAGAAAGCAGGCTGCCACGCTGGCATGGGGGTTTGGGGA-AGATGCTAAGGCCTGGAAGGGGACAGAGGTCCCTGGTCTCT---------GGATTTCCTCCTGGTGCCCTG---------------ATGGTTTGTTAGTTCTGTTTTGCTCGGTCTTGGCCTCCTTGCTTCCTGTGAGGGCTTAGCTCAAGGTGACACCTTAGCAACAGTTCATCTACATAAGCATCCACAG----------GCCCTTTGGAGGGACTGCTAGACTCCATGAGGGGTGT
s HiC_scaffold_1 107893595 1630 - 233722169 CATAGGTTCAAATTTTTTCTACGTATTGGCTCTTCTTTTCCATCTATACTCCAGTTCATGTGAGGTTTTACTTCATTTCTGTGTGGATTACTCTGGCCTCACAGTGATAGCTATGTGAGttgaaaaatagtttctttaGCACATGTTTTCT-TGAATTCTGTAGTTTAGAGATGAAATGCATAGAGTGAAAG--TGGTGAAGCGAGGCCCATGGACAGGAAGAAAGGGCAGCTGTTAGCAATTACCTTCCCTCCTCCAGACCTCTTGGCCTTGACTCTTGAGTCTCCTGCTGTTGCCAGACAGAGCAGCCAGGTAGCTTGTGGCCACATTTTGCAAGAACATTCAGAGGTCAGGAATCTAAGAAA--AAAAGTGAGTTGGGGTAGAGGGAGTGATAGAAGAGCAGAAGCACTAAGAGCAGGGTCTGTTTTTACAGGCTGCATGGTTCGTTGCTTTAGCTGAGAATTCAGATATCTCACCCTCAAATTTCTACTGTCCAGCATATCAGTGGTCAGATTCTGTTCATTTTAGGGATCTAGAGTAAGCAAGCGTCTGCTAGCCAAGTCTTTGGTTACCCCAAATTAGCTCATGTCCTTTACTGCTCGTTTCCTCTGATTATATAGTACACATCCAAACCCTCAATTATCCAGAATAAAACAGGTCTGCCTGTTTTGTGCAGAAAACATTTGACAGTGGTTAGAACT---CTGCCTAGACCAGTGTAGTGCCTTAGTCATTTAGCTGCTTGTCCCTTTTAAGGTTTTGAAATGCTTGGTCTTGTGTAAGCCAGGCATATTTCCTTGAGGAATT-----GAGGGGCAGCATGCCTCTTTGGAAACCTCAGTCATCTTGAAAAGTACTTCGAGAACTttcatggttttaatttttttttgtcgtAGTCCTATTTGTATGTAATGTTTGTGCTGTCTGATTCTCTGTCTCATATTGCAGAAACTCATGTCCTTGAATTTCTGGGTCACTCTTAAAAAATGGACAGAAATTGATTACTAATGAAAAGGTGACTTCCTTCCTTCCAGGCAAAGGCAGACGCCGATTACCAGAGGTCATAATTACTCTCTAAAGAAA------------------------CTTTCTAATT---------------------------ATGGGACATCACCCATT-------------------CTTGCCTGAA-----------------------------------------------------------------------------------------------------TTTTGTAAGAATCAATGATCGCATC---TTGAACTGGGGA---AGTCAGTGAGACATTTACCCTGTGTTGAGGAGGATACATAAAAATGAGCTCCGAATTAAAGTCTGACATGAAGTTACTTAAATAGTTGATACCTTCTGAGTTTAAATTTAGTACTTCCCTTTCCAGATCATTGtcttacatgcacacacacagccacTCAGTTTTTAGCCTTATGTAATTTATCAGTAGGGCAGATTCCATAAATACTGAAATGTTTGTCAC-----CACTCTGTAAGTAAGAAAATAGGCTATCATGTTGCCTGGTAGGTTTGGGGGCAGATAATAAgatct-----------------tttcatctcttttaggCTAAGGGTTCCTTTTTGTCTCCTAACCTTGCTTAAATATATTGTTTCTACTTTCTcatttgcttgct---------tttgctttctCTGAGAGATTAGCTAAAAGTGTGGGTTGTG---TAGTTTATTTACGTAAGCAACTGTTGAGTGGTCCTTGCCCTTAGAAGGG--TGATAGGCCCTGTGAGGGATGT

a score=10088
s chr3            98059710 1029 + 160039680 TGGGCTGTCTTTCTGAAATTAAGCATACTTCATAATAACTGCTTCTCAAGTGGCCTGGTTTCTA-------------TAACCCtgttttgttttt----tgtttttgtttttgtttttgttttttttttgtttgtttgtttt-------gtttttCTCCTTCTCTTTCTTTTGCTCTG------GTCTTGGGAGTTAAACCTAGGGACTCAC---ACAGGGGACTCGAGGGTTCTACCAGCTGAGCATTATTATCTCTTGCAGAAATGGCCTTATTTGCAGTGAACAAGAGTTCACCTAAA------CTGTAAGCCTTTTGCCTTTATGATGTCAGTGG---------------------TGTCCTGCC---CTCGAGCAAGTG------TCAGCAAACTTCCTT-----------------AAAAATGCTAGATATCACATCTTTTAGGCCAAGAGTCAAGCTGACAGTTCTGTGTCACTTTATGCCCATTT-----------------AAAATGCCA-CCAGTGACAGTTCCTGAGCTGATGATCCAAACATAGATGGTGGAGTGTGCCAGCCCACCTTAGGGCTCAGGAGCCATTGGAAA-GCTTCCTGTTTCCCCAG---AAGTGCCAGATGCCAGAAAGCCACTGTTTCTGCTG-----TTTGTTCTTGATTTAATGTGCAA-TGATGTTCTTGAAGCAGAGGAGCTGAGATCACAACAGTGAACTACCCTTGATCCCTCTGCTGCCCGCTTTTGGTCGATGCC----ATCTCTGGCTGAGGTGATGTGTGCTAGTTACAGCCAGGGTTTCTACTAAATTAACGAGGAACATCATTCAAAGAAGTGAACACCACTCATTTTTCTTTGGCAATTAATTGTTCTCATTACCATCAAAGTAATAAA---TGTTAGTTGGTGTAAATGCCATAAAAGTTATCTTTTGTGTGGACAAGTTTTGGGGTTGGGTGTTGTGACAGTGGTGG-TTTAATAGTCATGTTTGCTCTTAAGAGCATC---TTGAGAGGCTTGCAGGTAAA------TCTGGC--------AGAGCTGGTGCT-GCCTGGTGTCTGCTTC------TGGGCACAGCAATGCAGTGTGAGCCTCTTACATGGGCACTGCAATCAATTTCTGTTGTATGTGACAGTCAGAGGGTT
s HiC_scaffold_1 107898755 1109 - 233722169 TGTATTACCTTTTTGAAATTGATCATAGTTCGTAATAACTACTCCTTAAGTGGCCTAATTTCTAGTGAACAAAGAAGTTATCTAAGTGAGCATTTGAAGTGTTTTTGTCTTCATGTACCATACTTTAATGGTTTTCTGTCCTCAGAGCAGGGTTAAATAAACGCTTCTTTAAGTGCTAGATAGTGTTTTGGGATTT---------TGCTCACTAAAAAGCAAATTGAAGATCTTTAATAG----GCATTTATAT-TCCCATTGAAGTAGTACCATTTTAAAAACGTAAAAGCCAGTCAGGAGTAGTGATATATGCCTGTACTCTTGGTATACTCCGGGAAACTCAGGCACAGGATCACTCTTTGCTGCTGAACCTGAGCAGTTTAACAActtagtaaaactctgtctcaaaataaaaaataagaaaagacctgGTAATATATctt--------ggtgtgaag------gccctgggt---tcaatccccattgccaaaaaaaaaaaaaaaaaagtgaaagccaGTTACTGCTCCTGGGCTGACAATACAGAAACAGATGG----------CAACAGATTTCGTGAGGTATGAGCCTTTTGAAATGCTTTATGTTCTCCCAGGCCAAGTAGTACAGACTGGAAGAACA--GTTCTTGGTGgcgattttgtttt---tttgatagcCAATTGAAGTTATTGAAGCagattttttgaaattaaatcaATGAATCATATCTGATTCTTTCTGTAATCGTTGTTAGTTAGGGCCGCTTGTCCATACTGGAGGCCAGG-------ACCAAAGCT-GAGATCCTGCCAAATTAATTCAtaatactaat-aaataaatgaaaattactt-tttatctttGACAGATG--TGTTTTCATTGGCATAAAAGTTGTAGAAATTGTCAGTTGTTGTAAATATCATGAAAGTTATCATTTGTGTGGA-AAGTTTTTGAGGTGACTATTTCGATGGTGATGGTTTTAGTAATTGAGTTTGCTTTTATAAGTTTCTAATCTAGAGGAAAACAGATAAATGAAATTCTGTCCCAGATATGGGGTTGATGCTAAATTAGTGCCTGTGTCCAGGCATGGGCACCGGTATGC----TGTCCCTCCTGCGCAGGCACTGCTGGCATTGTC---TGTATGTAAGAGTTTGTGGGCT

a score=15821
s chr3            98060817 405 + 160039680 TATATATTAGGAAAATGTGATTTAAAGA--AATCTATTCCATATGGGGTAGGGCAGCTTTGAATAGCCTTGGGTTTA-TGAAGGTTAAGAGGTAGGTGCTTTGTGTATCAAGAATCTTAATTAGCTTA-AAGATCCTTTAGGTAAACAGCTCAACCCAGTGGTTCCCAAACTTCCAGTGTAATTGAAGTCTGGAGCCTT--TAAGTTGTAAAGATTATGTGGACCCTTGCATCTTGCCCTTTGGCATCCGTTAAGAAT-------TTGAACAGCtgaatggcttccatatgctagtcactgtgtttggcacatagggtatagtagagaataaCTCTTGTCTATTAGAGAAGATAAATAATTGTAGTAAAGGTTAATGCACTGTGTCAGATTTATGGGAACATAAAGTGGGGATGtccc
s HiC_scaffold_1 107901109 401 - 233722169 tatttttgaggaaaatgtaatttaaaaaccaaTCTATTCCATACATGGTTGGTCCACATTGAATGGTTTAGTGCCAAGTAGGGgttaagaataaaatattctatATGTCAGGAATCTTAATTAGTTTTTGAAATCCTTTGGGTAAATCGCTCAACCTATTCCTCCCCAAACTTCAAGTGTGATTGAA-----GAGTCTTTCTAAGGTGTAAAGATTCCATGGGACCTTGCATTTTGTCCTTTGGCATCTAGTAAGAATATCAGCGCTGAGTAGTAGAGTGCCTTCCATTTGCCAGTCACTGTTTTAAGGAATGGGGAGATATTAATTAatagtttttatcttttgaagatgacaaataattataataa------------tgtgTCAGAATTATGGGAATATGCAGCATGTGTGTCTC

a score=73317
s chr3            98061688 2439 + 160039680 TCACCCAGATAGACCGTTAGGTT-----AATCGTAACAGCATCTTATATACATTCAAATGTGGACCAGATAGAACTTAGTGGTGT--AAGGAGTGCTTGTCAGGATTACAG-CCCCTGGCA-TGCTGCTGCAACACAACACTTAGAG-CACGCATCTC--CTTCTCTCAGACAGTTTGTCTGTTATGGTGAAGGGTGTGATAAGAGCCGCT---------------CTGTGATGTTTTAGTCACAT-TCTAATATTTT-TCAGGGTTCAGGGCA------CATGGTAAAGGACTGATTATTTCTT---------------------------CTGCTACATCAAGGACACAAGCCTCAGCACTGTCTGTGTGTCCCGGTTCCATCATTCAAG--GCTGCTGAAGAGCCTGGGCACTCCGCTTGTTCTCAGAGCTCTGATGAATGCGCTGAGACTCTCTGCTGGAAGATAAGGGCGCTCACGACATTCCATTGTAAATAAAGCATGTGTTCCCATC--------TCCTCACTCCTTATACCAGCCTCCTACAGAGGGTCGAGTTGCTGTGAATGAGTGGGTCTGAGGTCGTGCCTCT--------TCAGCCTCTTC--AGTCTGGAT----------------------------GTGTTAGCATCAGTGTGCTTGTTGCTTTATTCAGATGAGGGGGTGGAAAAACCTGAGCACCTGTGAACCAAGCGAGGTGGGGCTCCAGAAGACGAGCCCTGGCCTCCCGGCTCCC-ATGTCGGTTTTTTCCTGTGGGAAACTTTTAATTTGGAAGCATTCAGC-TAATGTGGGAATCAAGATTAACATTTTCTGAAATACTTGTACAAGAAAGGCAGAAACGTGCTGTCCAGGAAGCAGA-TTTACATAGTAGAAAAAAATGCCTGCCTTGCAGGGTTTGGTAGTCTTTGTGTGTCAGAtgtgagtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagaAtgtgtgtgtgagagagagtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaagagagagagagagagTGTGTGTGTGTCTGTGTGTAGGGTTGATTATATACAGGTCTTTGTTTCCTTTACATCAAACCAAGAAGGCCCTAGAAAGCATGTTTTACCACAAACAGCCT-GTTTGGGGCTCCACTCTGCACA--CCAGCGCTT------------------CCCCTTCTTACTAAGGAAGGTGTACTGTTTCTTTCTCTGGTTTTCTTTATTTCCCTTTCATTTCTGGAAGTAGCAGTGGGGAATGAGTGGGAGTGGGAACATGGGAAGATGCATGTGATATGA-TATGCAGCTTCCATTTTCTCTAATTACTAGGATGTTAACT--AAGTCTGTGC----------------------TTaaaacaaaacaaaacaaacaaaaaacaaaccacagcaacaacaaaacaGTCAGCAGTGAGCACAACCCATTTAGTTTCTTTTGCATAGAGTCACAGAGTTAAGAGGCTGAAGGTCTAGTGAGATGTGGGGCTGAAGTT--CTTGAAATGAGGGCCATGTCAGGTTGCCCAGTGGCCTGGGCTATTGAGTACAGCAGGGGCATTTTAGGCTGGAGTCTGAATGCTTTGGGGCATCTAGATGTTTTCAGCCTG-GCTTTGGGA-----AAGTTAAAAGGGAACTTTCACTGGTTAC-GCTAGCTTCGCCTGTTAGCAATTAATTTTATCTACTTTAACAGGGGAACAGGAACAGGGTAGGGGTGGGTGGCGGTGGCAGGAAACCTGGCTGGCATCATGGTCACAGGAAAGAACAGACTGATTTGGGGCCCTTCAAACTGTAGACCTTTGTTACTGACCAGTGTTTAATTTGGTTTGTGGGTTCTGTTAG-------------CTCCCACCCCATTCACCTTAATGGCTGTCTCCGTCCT---GGGCTCAGCAGAGGCTGGCTGCTGCTGTAGAGTGGAGGGCTGAGAGGCCCAGGGCAAGAAGAAAGTGGGCTGAAAGCTGCGTTCTGTTTAAAGAATTTTCTGCTGGAAACCAGCCCAGAGGGAGTCAAGAGGAGCTTTAATGAGGAGCAGCTGCGCTG-CGAT-CAGCCCACAGGAGACATTTT----CCCTCCATCCCACATTCTGCACAGGTTTTGAAAACTCAGGATTTTGAAATTGCTGTTGTGTGAAGAATGCCCCTC-----CCTCTTGCGTGTGGTGGGGCTTTTC-TTTGTTGTTGTTTTTAATGACCAGATCCTC-----------ACCAAAAGTA----------AAAATAAAACTCCTAAAAACAAAACCAAA-----------------AGGGTTGCAGTAGAGCC-TGGGCACAATTTGGGCTCACCCTGCTGCT---GAACATTTGGTGGGGAAAGTGGGGGAGCAAG--CCCTGGGGTTTAGTTGGAAGAGACG-TTGTTTCCTTCTCAGACTTCACCCGTGTTGGAGCTGACA-GAGCCTCT-CACTGCTCTTGGCGTTTCTCTCGATGGGTGGCTATTCACGTGGG--------------AAAGTTTTCTGCCCTGTATTACTGGGGAGA--------------CAGCTATTGCAGATAGACTATAGGTGGGAACTGCCATTCACGTCCCTGCCT
s HiC_scaffold_1 107902246 2457 - 233722169 TCACTTTAATATGCCTTTATATTTTGATAATCATAACAACCTCT-GCATGCATTTAATTACAGGCAAGAGA-ATTTTAGTagtatttagtgattttttttcaggattgCAGACCCCTTGCAGTAGTTCTGCAGCCCATAGCTTAGAAACAATGAGCTTAACTTTactaat---ttttgtttattattgtgAAGG-----ATAAAAGCCTATATAACCCAGTTGTATTTGTTATGTTTTAGTCACATATAGAATATTTTCTTAGGATCCTGGGCAGTGAAATATGGTAAGGTACTGATGGTGTGCTGGATGGCAGAGGAAAGACCACTGTGTGTTTCAGCAGCAAGGA-ACATCTTTCAGCACTGTTTGTGTGCCCCTGCCCCATCTTCCAAGTGACGACTGATGAGCCCAGGCACTCCGctctgctttgaaattctgaTAAATGATCCCAGACTGTAAACTGGAAGATAAGGGCGTTTGCAAAGTTCTTGTGTCAATAAAGC-TGCTTTCCCATTGCAGTGGTTCCTGACTTCATA-----GTCCCCAGTGAAGAGGAATGATACTGTCACTGAA-----CAGTGTTCACACCCATAATCACACTTAACTTCTCCCTGGTTTggatttatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattgctttATTCA--TAGAAGCATAGGAAAACCTGAACACATGCA----------------GCTCCAGAAGACAGTTCCCAGCCTCACAATTCCCCGTGAGGTCTTTTTCCTGTGGGAAACTTTCAATTTGGAAGCGTTCAGCCTAATGTGGGAACCAAGATTAACATTTTCTGAAATACTTCcacaagaaaagcagaaatgttCTGTCCAGGAAGCTGAATTTACATAGTAGAAAAATGGGC-TGTCCCACAGTATTTGGTATTCTTTGTGTATTAG--------------------------------------------------------------TAGTGATAaaaagttt-------------------tgtgtgtgtgtgtgtgtgtgtgtgaaggagagagagaga---------------------------------------ttggttTGTCTACTTGTCTTTGTTTCCTTTACATAAAACTAACAAGGCCCTAGAAAG--TGTTTTACTGCAAACAGTGGAGTTCTGAGCCCTATTCTATATATGCCAATACTTGgttacttctttttgttttttcttcttgctgagtAAGCtataatgtttcctt-----------tttatttcttttt---ttcagaggaAGGGAGTAGGAG----GTGAGAGTGGGA----GTGAAGAAGT---CAACATGACTgagcttctttttcttcccctctttacCAGGAAGATAACTGGAAAtctttgtgttttgttatgttatttttgttttaaaacaaa----------------------------------------gtcaGTAACTAGTATAACCCAGTAAGTTAGCTTTACATAGAGTTACAGAATTAAAAGATTGAGAGGCTGATGGGCCATGGGACTGGAAATGCCAGGACGCGAGGATAATGGGAT-TTGTCCTGTGGGTTGGGTCTAAAATGCCATCCTAGGCTTCGGGGGCCTGATTCTGTAGGTTCTGGGGCCCCTAGAAGTTTGCAGCTAGAGTCTTGGGATTTGAAAGTTACATAGGAACTTTCACTGGTTACAGCTAGCTTTGGCTGTTAGCAGttatttttatctactttaaCAGGGG----------GGATGGGGGAAGG-------GGCAGGAAACCAAACTGGCATTCTGGTCACAGGAAAGAACAGGCTGATTTGGGGCCTTTTAGACTGCAGACCTTTGTTACGGACCGATGCTTAATTTGGTTTCTggattttgttagtttttttcccCTGCTCTTACCTCATTTACCTTAACGACAGCTTCCCCCCTTTGGAGCTCAGCTAGGGCAGGCTGCCACTGAGGATTGGGGGGCTGAGAGGCCCAGAGCAAGAAGAAAGTGGGTTGAAAGCAGAGTTCTGTTTAAAGAATTTTCTGCTGGAAACCAGCCCAGAGGGAGTAAAGAGAAGCTTTAATGAGGAGCAGCTGCAGGGCCGACACAACCCACATGAgacatttttttcccctccattccaCATTCtgtgtagttttttaaaaatcatgattttgAAATAGCTGTTTTGTGAAGCACgcctgtctttttcttcttgtatgtagtgggattttgcttttttttttttttttaatagtcaaaTCCTCACTGAAAAACTACCAAAAGGGCGggggcaacaaaacaaaacaaaacaaaacaaagcaaaaaacaacccACTACAAGCAGAGCAGAGGCAAAGCCTTGGATACGATTTGGGCTTGCCCTGCTGCTACAGAGCACTCCATGCAGAAAAT-AAGGAGTAAGAACGCTGGCTTTTATTTGGAAAAGGGGCTCATTTCCTGCTCAGACTTAAGTCATCTTGGAGCTGACACAAGCTGCTACACTGTTTTAAGCTTTTCTCTACACGAGTGGCTATTCATTTAGGAAACTTGAAAGAACAAATTTCTTTGTCCTCTATTACTAGGGAGAATGATCCTGAACTGCAGCCATTGCCAG------ATAGGATGGAATTGCCAGTCACATCCCAGCTT

a score=38893
s chr3            98069240 1951 + 160039680 CCTGGACTCTTGACAAGACCTGTGCCCTTCTGAAGTGCA--CTCCCTGTCCACAGCCAG--TCTGTTGGTTTCATCACTGTGAACTCTGCTCCTTGCCTATC-------TGGAGAGT-GACTTACTGATGAAGAAGCTCAAGAGTCCTGTCCTCTCTCCCCCTCCCCCACCACCGTATAGAGTTCTGGGAAGGG-GCAGGAGGCCTTCGCTGATGACCTCACACACCGTCCCTGTTTACCAGCTACTTTCCCCACCAGTCGTTATAG-CTACTGCGCAATTCTTCTGAGCATGTT---GTCTTAGTTCCCCAGTTTCATGCCTTCCTCATATTTTTCAAAAACCT-----------------TCTGG-----------CTAATGAGGTGTCTTTGGTGTGCTTGGTAAAAGCAGGAAGGAATTCAGT--GCTTCCAGT-CATCAGGGAAGACATGACAGGAGCTGGGTCTGTGGGTGAAG-----GCTTGGTTTAAA---GATGTTTT--AGGTAGGAGTGGAACAGGCTTCTATGTC-ATTCTCCTGTCCTCCAAAAAGTAAAATTGACAAGTAG-ATCACTCAGGTATCTGGGGTTCCAGCCAAACAGCGCACATTATAGTGAGAAGCACAGTCTTTAAATGTGTTCTTGTTACGTAGTCGTTAGTGGTCTCGATTAAACAACTTCAC---------------------ATCCTTCCTGAGGCTGTTTAGAGAACATTTCTGTAAGTGATTCCTGTGTCTATGGGGTGTCTATGTGTCTTACAGACGAGAGGAACAACTTCTCAATGAACTAATTGGAAAATGTGGGAGAAAgttgttttgaagcaggttctcatacagttctggctgcccttgatttcagtgtgtggcctaggctggccttgaacctcccaaaccctggggttgcaggtgtgtgtcatcacgctcagctAGAGTGTTGTTCTTGAATTAGTTCCCTGCTATACACAGCTGTTTACGTGTTACTTGAGATTTTCTATGCATTCTTCATTATACCCAGT---TTTTCATTTGCTTAGT---------------TATCAACATTTATG-----ATGTCTCTTTGAACCCCTCCTGAACCTT-----CCTTTCCTCCTCTGTGTCGGTCTTAGCTACCTGAATGTAATCCAGCGAGGCAAGTGCAGAACagagagagagagagagagagagagagagagagagagagagaCCTACCATGTCCTAGCACTCAGTTGTGAAGGAGCCCATGATGGCAGCTATATGTTAACTGGGAGGTCT-----GGAGGGCTCAGTGTACTTGTTATCATGAAAGCGTCATAGTCCTGTCCACTGCCTC-GCCAGCATGAGAAAGTTACGGCCACAAAGGAGGCAGGTCTT---CATAGCACTGTATAAGG--------AGACCATCTCAGCCTGTGCTGATGGACAGATGTGGTGGGTATATTTTACCTCTGAGGAAGGGTCGTGCTGCCTGGCTGTAGTTGACCCTGCTGGGTCACCCGTCTGGTATTTTGTTACCTGCCAGGACTCACAGGGACTTGGAGATA--TAGT-AAATTCTCTGAGTGCCACTTCCGCAGTC---AGGGAGT-TTGTAGATTGTACCTTTACACGTCTTTGTTTACACTTGAATATTTTCTTGCATGTACAACATCGTTTTCT----GGTCTTTGGACTCACAAGAAATCAGGTGGTTTTCATGGATTTTTCCTTTCTTCTTAATACAGATGTCCAGAGGGCTTCTTGGGAGAATATTGCCAACATCGAGACCCCTGTGAGAAAAACCGCTGTCAGAATGGTGGTACTTGTGTGCCGCAGGGCATGTTGGGGAAAGCTACCTGCCGATGTGCTCCAGGATTCACAGGAGAGGACTGCCAATACTCCACCTCTCACCCCTGCTTTGTGTCCCGCCCTTGTCAGAATGGGGGTACCTGTCACATGCTCAGCCGGGACACCTACGAGTGCACCTGCCAAGTCGGCTTCACAGGTAATGGGTTCAGCCAGAGCACGTGCTTTCCGGTCTCCGTGGTGACCTGTACTGTGCACGTCTAGTCCTCAG
s HiC_scaffold_1 107912682 1881 - 233722169 CCAGGGTTCCTGACCAGACCTCTGAGCTTCAGAGGCGTAGACTTCTTTCTCACTGTCAGCTTCAGCCAGTTGAGT-GCTATAAACTCTGTTCATTGTCTCTTCCTCTCTTGCATGGTCTGTTTATTCATCATGATG-TCTAGAGACCTTGCTGCTT--------------CAGGGTGCTG-GCactgggaagggagggggaggctGTGGCTGGT-----------CCAACTCTGTTT---------TTTCCCT--TAGCCATTTTAATCTCCTGTGTGATTCTTCT-AGCATGTTCTTGTCTTGGTCTGCTGGTAACtagctttccttcttttctctataaatttgATCCTTGAAGACCTCACCTGATCAATCAACAACTAATGAAATATCTTGATTGTGATtggcaaagaaaggaaagaatccaATTTGACCCCAGTGCTTCAGGTCTGAGAGATTAGGAGCTAGTTTGGAGGGAGCAGATTTAGTTTGTTTTAAATGTGATGTTGTTGAGGTAATGGTGGAACAGCATTGTAGATCCAGTCTTCTatccaacaaaaagtaaaatggtGAAATAGGATGAACCAAGAATCTGGGACTCCAATGAAGTAGCAAAATTTATAGTTAGAAGCAAAGTCTTT----GTGTTCCTTTTAAATACTTCTTAGGATTGCAGTTTAAGCAGCTTCACTGTGAGAATAGAGACTTCTCAAGCAATTTTGAAGCTGTTTATAGAAAATTGTTCTAAATATTACCCATAATT-TGGGAAGGTTGTGCTTcttt------------------------tgaatta--taaaaaat--------------------------ttctt---cagtgcC--------------TCAATGTG-----------------GAACATATTA-------------------------------------TAGGATGTTATTCTTGAACTATTTCCCTTCTTCACTTTGGTGTTATTATAGTACCtttgatattttatgttattttaattacattttgtgcctttgcatttgcttaaaaaaCTGCCACATATATATTAACAAATATACTAGTATGTTCCTTGGACTTTTTCCTGTTCCTTTACCTCCTTCCCCTTTCTGTTACAGGGTCAACCATCTGGTTGTAGCCCAAAAA----ACTGC-GAATAGCCAAACC-AGTGTTTCAGtggaaacaagagaaagaagaacTTACTATTTCTTGATACTTACTTGAGAAATAGCacataatgttttatatattttaaattggaGAGATAAGAGGGTTGGCCAAGTCCATGCATGGTCATGTAAACACCTTAATCCCATCACATGCTTTAGTCAGAATGAGAAAGCTAATG----AATTTAAGCAGAGCATAAACATTGCTTTCCAAAAGGGTGCTGTTATACCATTCCA--TTATACCTATGAGAACAAGCTATG--TGTACTTTGCCTTTGAGTAAGGGTCGTGCTAACTAGA-ATTGCTGACCTTGCAGAATAGTTC---------------ACTTAGCAAGACTCAGAAAGACTCAAAAATAAGTGGTTAAGTTTTCTAAGTACTCATTTTTCAGTTGTAAGGGGGTCTTACAGATCATACCTT-AAAGTTCTTGATTCATAGCTTACTGTGTTCT-GAATATACTGCATTGTTTTCCTATAAGGTATTGGCCTTACAAAAAAG-----AGTTTTAATGGACTCCTCTATTTTTCC--ATACAGATGTCCAGAAGGCTTCTTGGGAGAATATTGTCAACATCGAGATCCCTGTGAGAAGAATCGTTGCCAGAATGGTGGGACCTGTGTGGCCCAGGCCATGTTGGGGAGAGCTACCTGCCGGTGTGCTCTGGGGTTCACAGGGGAGGACTGCCAGTACTCAACCTCTCATCCCTGCTTTGTGAATCCTCCCTGCCAGAATGGAGGCACCTGCCACATGCTCAGCTGGGATACCTATGAGTGTACCTGCCAAGTAGGGTTTACAGGTAACAAAGGGGACTCATACCTATACTTTTCCCTCTCAGCAGGTATCTTTATTTTGAATCTTTGCATTTCAG

a score=88328
s chr3            98072157 3839 + 160039680 [encoded data, 4304 characters]
s HiC_scaffold_1 107916864 3837 - 233722169 [encoded data, 4304 characters]

a score=28403
s chr3            98076414 2278 + 160039680 ggtctttgcaTTTCTAATCG-----TActctgaccactctatttaaaattatagccatcccctccatccc-cataattactggccctggcctcagtctttgttttctttttctgtgacacttagagtcctactgtatgatcggtaccctgtcatttcctccattatacctgttggtttttgcc------agttgtcc---cccagatc-------gactgaaggtcaggacccttgtttttgtttattgatcactgtcccaaacacctgaaaacagggccCTTGTGGA--ACAGGCCCACAGATGCTTGCC------------AGGATGGTGGGGTGACTGGTGTCATTTCCTGTCTGGAATCCTGCATCTCAGG----ATTGG----------CCGCTTTTGTCCAAGGACACTCTAATACTGGATAAAAGTGATTTTGAGTGTTTTCAGTTCTGAAAGTTGGGGAGTAGGACATGTTAGTGATTCTGTTTGCATGGTTAAGGTGCAGGTTTTCTGCAAAGAGCACTGTAGTTACTGTGTT----------------------------GACCCAGGAAGAAGGAATTCATACCACAAAAGT-----------------CATTCAAG---------------------------------------------------------------------------------------------------------------------------TTTGTACAA----------------------------------CATTGAG--------------------------------------------------------------------AGAAAT----------------------------------------------GTTCACAATTGGCATGGACAGTCCTGGAAGGTACTGGCTTTTTT---TTCTC-----------TACTCTCTATATGGT-------GACTTCTCAGAATGCCACCTGGTCTGCCCATTGCTGTCAGTGAAAGCCTGTTCTTGTAAAGTGCAAGGGCCTGTATGCTGTGCAGGCTGAGTGTGTGTCA--TCTCCTGGCAGGAAAG-------GCCTTGTA---CTTGTGTGTCTTCTGAGCTCTGTTGTTGGTGAGCAGAAGTACAACCAGCAGTGGTTCTCTCTACCATTTCCACGCTCAGGAGTGTGTGCTCTTGTCTTGCACATTCTGATCAC-------------------------------ACCCTACAGCTT----------------------------CACCTTTGTGAGATTTCTTTCCAGGAAAAACTGCCACTGAGGTCTCTCAGTCTGCCTGAGAG---------------------------GCTTCTCCTCTCCTGCCAGCAGCTCTCCACCCTCAT---TGAAAGGGCCTGAAGACAGGCC-GACA-GCA-GCTCTCCTGAGAGAC-CTGCTCTCTGCATGGGAGGACA-----------------TGCCCCTTACTG--------AATGTTGCTCAGCAGGGTGGCCCACAGTTTCCTAAAGGCACAGTCTTAAAATGGCCCTTCTGAGTTTAATTT-TCCCCTTTTGGCCTTTTAAGGATGGGAGTTGGCTTTGAGCAGTGGACTCCT--------------TGCGAGCTCTTCTGTGA--CTGACGCATCTA-CCTTCCCGTACATCTG-------ATCTGCGTGCTACTCCTCCGACAGACTTGAAATGTTTTCAAGAAGCGATGG--CTGTAACTTCCTGTCCCACCCTCACTTTTGGATGGAGAGTTTCTTTCAAGAATTTGCTAGCCCTTTTCAGAAAGATTTCTAGATTTTTAGTTATTTTAATGTGATTATTTGTGTCTGCATCTCTATTTTTAAAGTGTCAATCATGCCTTA---TTGGGGAGGAATGGATGTGGCTTGAGTTTGCTCAGATCTGGGGACTTTTAACCTATGCTCTGTTTTTCAGGTT---GTTGTAGGGCAGGCAGCTCTGGGGTCTCATAAAacaggctggtgaatactgagtggtgc-tctggttccctcctggatgctgcccactagccttgcaattctgggctagtgagcccagcccaattaccctcagcttccgcatttataatataagaggcttaaaggagatgatccccaGCGGATGCTCTAATCCCCTTGCTGCAAAATGGTATGAGCTCATACGTTTAAG--AACCTTCCCCTGGACtaacaggtttattgagatataatttacacaccatccagtttcctcttatagatgtacagtagctcctacttgctagacttacggatttgtgtcgtcatctccacagtcaggttgtaatgttctcacgctgcagaagaaccacatac-tgtctgtttatatcccgccca-tgcttcctaactccctcta-gtactgggtgacca-tgatggacttcgtgactctctttgcctactgtgggtattgtatatagatggaaacacataccgtgtggccC-------------CTATTCACTCAGTGTGACTTGGATGC---------GCTACAACATGCATGGTAGAATGCACTGCCATACCTTTCCTTTTCTCGAT-GCCCAATAGTCTCTGGCACAGTCTTGCCA--CCGTGTATTTCTCAGGGGGTGACATTTTGAC--------------------------------TCTGAGTTCTGTCCA---Gtgggtctt----------------tacctgggagaggagtcgctgagtcatatggtaacgc----taacttc-caggcgtggccagactca--------------caaggtagtcacactgcactatgctccgaccagtagccaaatagtattccagttcc
s HiC_scaffold_1 107920674 2760 - 233722169 GGTCGCTTCACATCAAATTGAGGCATAGCCTGACCACCCTATTTAAACTTGTAACCATCC--TCCATCCCTCTTAATCACTGGTCCtggtctgtgt-tttgttttctttttctgtggcaAGTAACTTCTTACTATATAATTCGTACTATATAATTTACTTCACTATGCCTATTGTTTATTGTCTTTCCAAATTCTACTGCCTCTGCTCCTCTCCAGAATGAAAGCTGAGATCCTTGTTTT-GTTTACT--TCTGTATCTCAAACACCTGAAAACAGGCTTGGTATGTATGATAGGCCCTCTGTTAACTGCCTATGTATGGTCAGAGACTGTAGCTTTACCTTTCTCATTTACTTTCTGCTGCCATGCTTCTTGGACTTAATTGGAATTCTCCATTCGTTCTTGTCCA------------------------------CTGTGTCTTTTCAACATTTAGAGTT-----------------AGTGATCATATTTAAAAGGTTAAGTTACAA-CTTTCTACAAGG-GTACTGTGGTCACTATTTTAGTATTTGAGTTGCTTTTAGTATTGTAGGATTCATGGAGAAAGAATTAAAActgcagaagagagagagaaaaaaagtaccttcaggaaagaataaaatgaaatcaggcaACCACATTCCATTGTCTACTTGGATTAGCTGCTGATAATCTAGAACTGTCGTGAACTTCTATCATAAAGTCCTGAGGAGGGCATTCAGCCAACAGTGATTTTTGCATAAGGGCAAAATAGAGCATGAACGTGAATTATTGAATCATTGAATCCCTATTTTTGGGTTAAGACCTATAAATAAGAGAGGATGGGTTGGGCTCATTTTGGTGGATATTTTAATAAATAGCACAAAACCAGAGCTATCTGGAATCTACTGGCCATCCCTTGTGAGTTCACATTTGGGTTGGGCAGTCCTC-AGTGtactttccctcttcctttctccctcacaCCTGTATTCTTTAGATTTCTGTTTTAAACTTAGCAGAATGCTATCTGATCTGTCCCTTCTTACTGAAGAAGGCTTTCCCTTTTCAGCCAC-------------CTCTGCA--CTAGTTATTTCTCACATCTCTGAATATTAAAGTTTGCACACATTTTATGGCTTTTATATCTGTCGTTTTCTGTTGCTCCTGGGTTTAAGAACTATTAG-AATGAaatccttttgcatttttgtACTCAGGAGTATGTGATGCTTTCCTGGGTATTATAGTAATCATGCTTTGACTTACTTGGGGGAGGGGAGTAGCCCTGTAACTTTTTGGTTTTGTCCAGTTCCGGATACTCTCATTTTTTC---ATCTCTGTTCATGGAAG-CTGTTCCTGAAGACTTTCAGCCTGGCTCAGAACATCCTGCTTCTGTCATCTCCACTTccatttctcctctcttctccactCCTTTCCACCCTTACACCTCCTAGGGCCTGAAACTGGGAAAGACATGCATGCTCTCTTGAGAAGTGTTGCTCTCTGTGTGGGATGACAAGTTCAAAAGACTTTTCTGCTCCCTATTCTCATTGCCATCATTAATCACCACAGTGGCCTGTGGATCTATAACAGCCCAGTCTTAAAATGTTCCTTCTAAGTTTAATTTCTCTTCTTATGGCCTTTTAAGGATGTGGCTTGGCTTTGGGCAGTAGACTCCTTTTAGTGTGGCCCATGTGAGTTCTTCCGTGACTCTGCTACAGCCATCCCACCCACGAGTCTGCAGGCTTGTCTGCTTCCCTTTCctccaaaactgaaaaaatattcttaagaaGGGACTGCACTGTAACTTATAGCATCCTTCT-GCATTTGGGTagactttttctttaaagaa--tgttAGCTTTTTCCAAAAAGGACTCca--------------ttaa----------------------tctatttttaaagcataaatcCTGTCTGAACtttggaggagaaacagtttggCTTGAGGTTTCTCTGACATGAGTACTTTTGACCTAAAATCAGTTTTTCAAACTTGAGTTTT--GAAAGAAAACTCTGGGGTCTTAGAAAACATACT----AAAACTGGGTAAAACTTCTGGTTCAGTACTGATTCTTGCCTACTGGCCATGTGATTGAGGGCATGT-----CAGCTATGTGACCTTCAACTTCTTCATCTCTAACATAATGGGATTAGAATAGATAAT--CTAATGGGTGCTGTAATCCCATTGATACATAACAGTATTAGCTGATAtgttttaattgcttttctcCTGAAATAACCACT---TAGAGATATAATTTGCA--------------CTTGTATACAAAT-CAGTG------ATTTAATATATTCACAGATATGTGTAGCCATCACTTGAGTCAACTTTAGA-------ATGCTCCAAAAGAAATCCTTGTATACATTTTCAGTTGCTACCCattgtttcttaatttcttctctgcTCTTGGTGATTattaatctactttctgtctgtaTTTACCTATCCTGGGCATCT--TATAAATGGAAATA-GCAGTATGTAGTCCGTTGAGGTTGGTTCCGTTTActcaatgtagtttttaaacttcatccatgttgtagcatataT----CAGTACAGTGCTTTA---TTCCTCTTCATGACAGGAAAATATTTACTTGTGTagatttgacattttatttactCATCAGGGATTAACATTTTGGCAATTACAAGTAATGTTTTTATGAATATTCTTGTTTAAGTTTTGTATGAatgtgggtttttatttttcttggtgtaTACCTAGCGGTGGAATTGCTGAGTCATATAGTAAATCTGTTTAACTTTACAGTAATTGCTGGACTTAGACTACATGTATTCTAAAGTGGCAGCATTTT-TTACATTCTAGCCAGCAGGCTCTGAGGCTTCcagtttc

a score=22710
s chr3            98078716 2305 + 160039680 gtctgccattttgattataacagtccagagggatgtgacattat-ccatctctttgtttcgatttgtgcttccctgatggct--tgcagcgacaagacctggtccttatgcttattgtttatgtgcttgtttggggagtgtccactgagagcctttatcatttagtgattgggttatttgtattttttgttaagctgtgtaagttctaaaaaaatacatcctagatc--caagtcttattgtatgtgtgactcacaggcactctctcc----cattctgtgg-ctgcccccttccttccc-----------cctcactgtttagatgtccc------gaggagatctatttttttccctgcttga-------gcttttggccatatttaagcaagctttgcttagctcaagttagaaaagatccactcctattttagcacctttatctagggccaatggttctcagccttcctaatgctgtgactctttaatacagttcctcatgttgtgctgacccccaaccatacagttatttctttgctacttcataactaattttgttactgttatgaatcttaatgtaaatatctgatatgcaggatttctgatatgtgaccccctctaaggatcctgacccacaggttgaggacctctgatctaggcctcttacaagtctttgaatgaatttttatgtgtatgt---gagtccacgttcacccttgtactcatggac------atctgattgG-TTAATTTAAGTGTTCTTTACATGGAACTCATTTATGTTTGGAGCCAGGTCCTGGGAATCCT---AGCAGCAATGTAGGTGGGGATGCTGTGCTGGGTTCTCCTCAGTGACTGCG---------------------------AGTCTGACCTTGGAACCTATGTTTTTAACAAAGCAAATTCACGTTCTTTCTCCATTTCCTTTTCCCCTACTTACCCATTGATGAGAAAGAACTATCTTGAAAATTATCA----GCTATG-AAAACTGTCTTTCTTGCTTCCTATGGTTTTGATGAAGTGTTGCTG-TTTCTTAATTTGTACATGATTGGTAAATTCAATGAGTTGTAACACTAGCTAGTACAATGTCAAGGTCCCAGTTAACATTCCTTTTGGCTGAGCTACAAGGGCACTGCCACTAGCCTGCTACCTTATTCTTCACTATTTAGCCTTAGTCATGTGAGACTAAGTTAGGGAGATGAtgtt-----tttcttagggtttctgttgctgtggtgacacagcatcaccaaaagtcaatggggaggagcggtttatttggtttatacttccacatcagtgtctgtcatcaaagaagggtggggctgggacctgagcac-agacctggagcagaggctgccgagggaagctactcactggctGCATGGTAGAGGTGTAGTCAGAAGCCTCCCTTTATCACTACTTAGGGGTGTGCTTTAGCAGTTCTACATCTTCTTGTGCACTGGCCCATTTGTAAGACTTTCATGTAAT-AGACAGAAATAGAAGT------AATTTGATAATTTTAA---------------------------------------------------------------------------AAAATGTAAATGTATGCTTCCACAGCTTTTAATTATTTCTGTCTTCTATAAGGTGATT----TTTGG-------TTTTGTCTACTTGGTTTATACTCATTT-ATATGACTGTCACAACATC------AGTCACTGTGCCATGGTTCAGCACAGCAAATCGGATGTA-GAGTCCATAGTAGCTTGTGGTTAGGAAAGAAGAGAGCAAGGCATGATTGAAGTCTG---TACCCAAC------------------AAATAGGGCATCTGCCTATCACTCTGTGGTACCCC-AGGATGTAGTGTAAA--------------TAGAATGAG-----GAAAGCTGTAAGAGATA-CGTTGGGGAATGCAAATGTTTGGTCACACAGTGCTTCAAATA----CGTGCTCACTGGCCACTCTT----CTTAGAGCTGACAGGGCTTCTCTTCTTTAATTCAGAAATTTGGT-----------CACACAGGAAGGAAAGAAACTTA--GTGACAGTGACAGAGAACCACCCCACAGGGACTTAGGGT-GAGCCTAGTATTTTAGAGTTG-----CAGACGTGTGGAAGACAA-----------GCCATGA----AGCCTTCACATGGAGAGAGGAGCAGGAAGTTTGGAACACTGGCAGTTCTAGTCACTACCAGTGCCACCTC-TCCCAAAGCCTGTGTTA----CTGTGGAGGACTCT--TCctgatgtggcacttac--cagtccagaaaggcaggctgggcaggtgtgttcagactccctaccaaatgaccgacgctgactcagagtttgtaatgctgtgcagtgaacagctt-caggtggggacgctgtgactcagctctgctcttcctacctca-agctcagtgtctcccctgTGTCCTCCCACCCAAGTCACCTGTGTAGTTTTGGAATCCTCTGACCTGT--------TGTCCAAGAAAAAA
s HiC_scaffold_1 107923805 2242 - 233722169 gtgtgtcttttttattcTAGCAGTCCTAATGGATGTGAAGTGGTATCATCA----GgtttgatttgtgtttctctgatGCCTCATGAAGTTGAAACTCTTGtatttaatgttcattttatgTAT-CTTCTTGGGAGACCATGTCTTTAGATCCTTT----------GACTgggttattt-----ttttaataagctgtgagaattttt------taaattgtagataTACATCTCTTATCAGGTGTATgctttgccagtattttttttttttcattttttggattgtCCTTTTTACTCCCTTGGTGGTATTCTTTGAAGcctaaatgtttttaatttgatgaaatccagtttatctacttttttattttgctactttTGACTGTATTTAAGAATGCTTTACTTAACAGAAGTTA-CAAAGatacaatctt------------------------------------------------------------------------------------------------------tttctttttgttttaataaatagTTTTGTAA------------------------------------------------GTTAGCTCTTCCA--------------------------------TTTAGGTCTGTGATacat-tttgagataatttttatGTATGAGGAGGGGGTTcaactttattcttttatatgtggATTTTTATATCTGACTCGCTTAATCT-------------------TTCAGTAATTCTTCTAGCTAGATCCTGTTCATCTTTCGAGGAAGAAAGATAGTGTAAACTTTGTGCCAGGGTTCACTCAGATACTGTGTGCCAGGGCTGGGAGTTGTGCCTCAGCAGTTTGGCTTCCGAGGCCATGCTTTTAACCA--CAAATTAGC--TCTCGCTTGTCTGCCTTCTTC-------ACCTGATGACAGTGAAGAATTACCTCGAAAATACTCATTCAgccatataaaattttatttctta--tcttgTGGTTATGTTTAAGTGCTTCTGCTTTCTTAATTTATCTGTGGTTGATGAATTCAGTTATTTGTAA----------------GTCAGGGTCCTAGTTCCTATTCTTTATAACTTAGCTGCAAGGACTTTATCACTTCCCTGACACCTTAGTCAATCATGTTTAGTCTT--TCTAGGGAGAC-AAGTTAGGGAGAAGATGACCAGCATGTTGTAGAATCTCCATC---------AGACTGCAC------AAGT----------------TCTAGTTCTTTTCTGG---------AGTATCTG-CATGAA---------------------GAGCACTAGACTAGGAACACTGATCTCATATTGCACTTAGTGACTG-CTCTGTGTCAGAGCTGTAG-CTTTGGTCTCACTTAATCA-TAATTATAGATGGGCGTAAGCAATTCAGCATTTTTTGGT---TTAGTCCATTTGTAAGATTTTCATATGATTAAACAGCAATATTActcatacaaattttaaaatctgaacatATATTTCCttagtctttctcaggtttgctTAGTGATTCATCTGCTTGAATGGACTGAATAATAAGTAGTAGAGAAATACAGTTGTCTTCTATCA-AGCTTTCAAATATTCCTGTCTTCTATGAAGTATTTCGTATCTGGGGAGTATCTTTGGCCATTCattttgaactcattttatatAACTAACCCTGTATTCAGAGAAAACA----GCCATGTTTCAGTATAGCAAA-CAGATGTAAGAATTCACAGTGATTTGAGGTAAGGAATGAGTAGAGCGAGGTGTGATTGCTATCTGTCCTACTCATCAGGCTGTAAATGTTATGAAAGCGGGGACTCTGCCTTTTGCTTACTGTTACCCCTAATGTCTGGTGTAAGACCTAGTAAATATTTCAAGTGAGAGCCAGTAAACT-TAAGGAATATTTTTGAGGAGTCCAAATACCTAGTCATACTGTATTTTAAACAGGAGAGTATTCATTGAACATTCTCTTGGCTTAAAGCTGGTA-GCCATCCATTTATTAGCGCAAGgatttgatacaaaaaaaaaaaaaaggaaaagaaagaaaccaaatataaaaaatacagagaacCACACTGTGGGCACTGAGGGTCAAGTCtggtgttttagttttgtttttcacaaatgagaaagaaGATAGGAATCAATGTTATAAATATAACATTCATTTAGAAGTGAACATAAATAATTGGAAGTATTGGGAAG--TAATTAGTAATCATGACACCCCATTCTATGGTCacttttaatatttgtataataCTTTAGTCATGATGT---ACTTACAACAATGTAGAAAGGCAGACTGGGCAAGTGAAATCAGACTTATTTTACAAATAGGGAGGCTAACTTAGCATTTGTATTACTGTGTATTAAATGGCTTGTAGGTTGTGAGATTGGGATTTGACCTT--tatcaatatttaatatttcaatgtTTTTACTGTGCTCTC---CTCGATCCTC------AATTTTGGAGACCCCTGGGCTATCTCTCTTCtacccaaaaagaaa

a score=23257
s chr3            98081579 1175 + 160039680 CTGTTCTTTTTAGTAATCTAGACAGGAGCTTCGGAAAATCCAATACCCTGGTGTTTGGAACCAGTTAATGGTTGTCC-AAGTATACATTTGTCTTCTCT--GATTTTATTTCACAGAA----------ATGAATGTGAGGTAACTATGAACGCAAGA----GGCATACTGAATGACTTTCATTGTCTAGCTGTGCTTAAGGCCAAAGAGTAGAGGACTGGGTATTTCT-TGTGCAGCAGTTGCTGGGATATGCACTGAAATTGCAAAGCAGGTCTGTCCTG-TGACCATGTCCTGCTAGTGAGAGCAGAACACTGTGTTGTGAGA--TCCTCATTGTCTTTTGTTCTTCTTTGATCAGGTTTTGAAGGGAGCACCTGTGAGCGGAATATCGACGACTGCCCCAACCACAAGTGTCAGAATGGAGGAGTTTGTGTGGATGGTGTCAATACCTACAATTGCCGCTGTCCCCCTCAGTGGACTGGTAGGT--------------TCAGGGTAGAGTAC-----GGCACGTGGCAGACGAAACTCTTAGCAAAGTGGGTATTGTGTTCATGTTACCAT-AGGATGCTTAGCTGTCAGA---GTGTG----TAGCCTGGCTTCAATTCCCAGGCCT-----TGAGTGGGACTCT---CCCGTG-ATTCTTTGCCCACTCT-----GAAGTGTGTTCACAGGCACCCCTGGGCAAGAAGAGCTCTGAGCTCAGAGCTGGGACAAGCACTGTTCTGGGTTGGAGAGCAGAGCTTAGCATCTGTCA--GCCTGTGGTCTGG---ACACAGAACG---------------TGCTCTGTAGGTATTTGAGA---------------------------GGGAAAAAAATTGTACTTTGATGC-ACAACAAACTGTGCATATCTTAAGAACCC-----AGAGCTTACGG-----------TTTATCTTGG--ACAGACAGCTGTCCTTTCACAAT-----GCCAGGGGCAATGGGCAGGGACTCTTGGTGACATCATTT----------CTACTATGTCT----TTCTCCTTTTTTGTAT-CTTTTTTGCACAGTGGTTTAAAGTAAGTTTTTTCCCTACCACTGACATGAGTAGGTCAGTTGTGCTTAAATCCTTAGCCGTTTTGAAGTTTCTTGTGTT-TCTTAGGTTTGTAACCCATTTTTTAAAAGGTGAGTGA-TCTTATGTAGGTATTTGTCTTTAGATTCTGCTCA---TGTTGACCTGTTTATGACTGACACAGAGATAAGTAGAAACTGGTTAAgaaatgaagagctgaat---------aaatagtctttaagttaat
s HiC_scaffold_1 107926074 1297 - 233722169 CTCTTCTTTCCAGTAGTCTAGTCTGGAGTTGGGGAAAGTCTAATTCTATGTTTTTTAGAaccagtatttatttttcctaagtaGATAATTATCTTCCCcaggattttattttgttgaaccaTGTTGAAATACTTGTACAGTAACTATGGAGCCATGTCATTGGTGTAATGAGTCCCTTTCACTGTTGGGCTATGTTTGATGCCAGAGAATAT--GACTGTGGAGTTCTATACTGAGCAGTTGCTGGACT--GACCTGAAGTGA-----------TGTTTTGGTGACTGTGTCCAGTGGGAGATAGTGAAACTCTTCTGTTTGAGAATTCATCATGTCCTTTTGTTATTCCTCTACCAGGTTTTGAAGGGAGCACCTGTGAGCGGAATATTGATGACTGCCCCAACCACAGGTGTCAGAATGGAGGGGTTTGTGTGGATGGTGTAAACACTTACAACTGCCGCTGCCCTCCTCAGTGGACGGGTGAGTATGTGGCCAATTCATCAGCACAGGGTGCTAATTGGCAC---CCAGTGGAGACTGGTATTAAAGTGGGCATTTTTTACAGATTCTCTTAAAGCTCCTTTGAGTCTAGACTGGTGTGAAATGAGTATGGATATTCATACTGGACCTTTGGGTGAGTGCAGTGCTAGCCCTGTGTGTTCTGTGTTTAACCCCAATAGACGTAT-TTCACAGGTATGATTGG---ATAACCGCTCTGAAGTCAGCACCATGTTGAGTGCTGT----GATACGAGAGAAGTACATTGATTAAACTAAGGCTTATTATCTGGCAAAAGCAGCACATTAGATTATTGTAGTTGCTTAATAAACATTTTAGATCACTGTCTAATTAAGATTAAGGTTGGAAGGAAAAGAACATGCTTAAATGCTAAAATAAATTGCACACACCACAAGAGTTCCAGTTACACTTTACTGAGGGAGCCACATTTATTCTGGTTATTATTTGTTGTCATTCCCCCATAACTAGTAAAGGGT--TGGGCAGTTACTtt---tgacattattttttattatccccactacatttttgctttttctttcttgtatccTTTTTTTCACACCTTACAAAAatagcttttt---ctttctctgacttcTGAAGAACA---GTGTTTAATTTTACAGCCTCTTAGAAGTTTCTTATGTTGTCTTaggtttttcactta-tttttgaaaGTCAAGTgagttttatatatacatttagttCTAATTTTGGTTTATAGTATTTATCTGTCTCTAG--AAAGTGGAAACTATTGAGCACTGGCTAAGGGATTAAGAGCTGAGCCTTTTGAGGAGACAGTGATTGATTTAAT

a score=66591
s chr3            98083297 4094 + 160039680 [encoded data, 4745 characters]
s HiC_scaffold_1 107927515 4487 - 233722169 [encoded data, 4745 characters]

a score=31434
s chr3            98089341 1156 + 160039680 GTTCTGTCCTTCACAGCCTGTGACCCTGAGTTTTATTTGCAGAGCATTTTTGTTTTCTTGTGACACACAGTTATCTCCATCCTTCCTGTCTCTTCTGCT-GCTTCTCAGCCCCTTCCACT--------GACCCTGC--TGTTCAGTGTTGTTTTAGAACCCGAGTTTGTT----AGTGTCTTGAGAGCGGAGAACCAACTCTTTCTCAGTGTGCTAGTTCCTGGCAATGGATATTTTT-ACAGTGTGTTCTTTATCTGATCGTATGTGGCACACA-TCCATACTTTATATTGCAGAACCTTATAATAGCCCCATGGTGGAGTTTTCCACTCTACTCATTCTGCACAAAGTAACTACTTGTCTGTGAATAGAGAAATTCTGGGCTGTTTGGATCCCCTCACCCTGAAC-------------------CTCCCTGTGAGGTGAGGGC-TCTCCCGTGTCAATTGGCTTAGAAGTGAGGAGCCTAAAGAAGTGGGTATGGAGCCAACACATGGGCCTTCCAGAGGCGAGAGTGAAGCTTGGCATTACCTTCCTCTCTGGAGA--AGCCTCTGTGCCAGGGGTCAGCTTCCTGAATGCC-AGCTTTGGCTCAGCTC---------TCCACAGAGGCCAAGCCCGGCTGTGCTTTGGTGCTGTTGCATCCGGAGTTTGCCCCAGATGCACCACAGACTCTCTTGTTGCTATAGTGGCCACAGTGGCCTTCAGCTCCTCTGTGCTTTAAATTGCTGTTGACCTGGAGGGGTGAGGTGGAGTTCAGCGCATT---CTTCCTGTAGCTGGGCAGGCTTTCTGAAACACAAATCGCATGT-GCTGTTTCTTTCCTTAAATGCTTTGGTGGTGAGTCCTTGGTTTGGGATGGAGTTGCAGAGTGCTGCATGGAACCAGCTCT--CTGCATCTCCCCACTACCCATGCACGCCTTGCAATTCAGC----TGCACCCTCTGCTTCTCATTGCCTCAAGTGAGCCATGGTCCTTCTTATTCGAA-GTGCGTACTCCATGTCATTCTTTGAGAAATGTTCTCCACGC-------CTTCTTTCCA------------CCCACACATACACTCGTAGACAGCC-TGCCCTGCCCATGTGTCCCTCGGGCTTTCATTTCCCAGTTTTGTTCTCTAG---CTCTCTGTTCTCC--------------TGAGGCAACAGGTAC-CCATTAAAATACTTGACACCCTGTATTATCGTTGTTTGTGTGGGATACC
s HiC_scaffold_1 107934549 1172 - 233722169 gttttgttcTTCACAGTCTCTGACCCTG-GCTTTATTCA---AGCCGCATTGCTTTCGCGTGACATATACTCATTGCG----TATGGgtcttttctgcttgcttttcAGCCTCTTTAATCAGAGTCTCGACTCtgtattattttcaatttctttggagCCCAAATTTGTATAGAAGTCTTGAGAGAGCACAGACTTAATTCTTTCTC---GTGTTACTTTCTGGAAGTGAGTATTTTTCACAGTGTACATTCTGTTCAGTTTTGAGTAGCATGCCCTCCATGCTTTACATAgcactatttt---------------------tttcctttttacctacTCTG-GTTGAGTGACTCCTTGCCCATAAACAGGGAGGTT----GTTCTTCGG-TCCCTTCGTTCTCAGCATAGCAGCAGCAGCTTTTTCTCCCTGTGAGGTGAGGGCCTCTTTTGTGTAAACTGGTTTAG---CTCAGCTTCTAAGGAAGTGGG-AGGCAGCCAGAGTGTGAGCCCCCTACCAGGGGAACCAGAACTTGGCGCTGCTCTCCTCTTGGGAGAGAAGCCTTAGTGCT-GGGGTCAGCTTCCTGAATGCCCAGCACTGGCCCAGCTCCCATGACTCTCCATACAG--------TAGATGCTGTTTGGTGCCGTTGTATCCAGGATTTGCCCCAGATGCACTGCACTCTTTTCTGTTGCTATAGTGG------TGGGATTCA-----CCAGTGCTTTAAATTGCTCTTGACCTGAAGGGGTGAGGTGAAGTTCAGCTCATTCTCCTCCCTGTAGCAGAGTGGGCTTTCTGAAACACAGATTGGATGGAGTTGTTTTTT--------TGCTTCATTGGATCCTCCTTGTTTTTGGATAAAGTTGCAAGGCATTGCATGTAACTCTCTCCTGCTGCATCTCTCCACTCCCCCGGCCAGCCTTGTAATTCATCCCCATGGATGCT---TTTTTCATTGCCTCAAATGAGCCATGCTGTCTTCCATTCAAACCTATAAACACCACTTCCTTCTGCTTGAAATACTACCCATCCTGTTGCACTTTTTTCCACATGCTCTCTATCACACATATGTACTCTTACACAACCTTGTTCTGCCGGTATAG---------TTTTACTTAAAAGCTTTATTTTGTAGTTCTTCTCTGTCCTCCCTACTCCGTGCTATTAAGACAAGAGGTGTACCCTTAAATTACTTATCAccatatattttccttatttggCTATAACACC

a score=138062
s chr3            98092008 11078 + 160039680 [encoded data, 12652 characters]
s HiC_scaffold_1 107936379 10923 - 233722169 [encoded data, 12652 characters]

a score=3903
s chr3            98100208 181 + 160039680 ACCCTTGTGAGCATGCAGGAAAGTGTGTGAATACAGATGGCGCCTTCCACTGTGAGTGTCTGAAGGGCTACGCAGGGCCTCGCTGTGAGATGGACATCAACGAGTGTCATTCAGACCCCTGCCAGAACGACGCCACCTGCCTGGATAAGATCGGAGGCTTCACCTGTCTGTGCATGCCAGG
s HiC_scaffold_1 107966971 181 - 233722169 ATCCTTGCCAGAATGGAGGTTCCTGTGTGGATGGAGTGAATACTTTCTCCTGCATGTGCCTTCCTGGCTTCATTGGGGATAAGTGCCAGACAGACATGAATGAGTGTCTCAGTGAACCCTGTAAGAATGGAGGGACCTGCTCTGACTATGTCAACAGTTACACCTGTAAGTGTCAGGCAGG

a score=22980
s chr3            98103776 811 + 160039680 AGACCTCCTTGGACCCTTTTTAGGAAGAGGTGGGACATGGATCAAGTTACACCTCAGTTGTGGGATGCTTACTTCTCTCATTGTCTTTCAGAGAGTCACAAGTGGATCATTCATTTTATTTAATGAATACCTATTTAGAAATTAGTA-----GCATAACACTCTTGGACGGGCTCTGAGA--------------CTCTGTTCTCCAGACTCAGATCTGTAAGACGGAATA--TGTGAAGTCAT-AGTCAGTGCCTGTGTGCTGGG---AGGAGAGCTGCTCAGAGGCA---GCATGCAAGGAGGAAGTGTGGAGTGCCTTCCTTCCCTGCAGGCCAGGAAGCAAGCACACTGAGAAGAGAGCAGC-------AGACCCCAGGC-TCAGGCACAGGGGCATATCCGTTCTGCAGACTCCTCCAAGAATCTGT-----GAGCACGGGGTCCCCAAGCTCGAATTATAAATCAGACAGGCAAGGCCACTGCTCAAAGCCACCTGTGAAGATTGCTCCAGACGTGGGGCATGCAGGGCGGCTGGGCAGGCCGCCTTTGGGTGTAGACTCAGCGTGCTC---CCTGGTTTCAAAGGCTCCTCACTAAAATTCTTTCTGCAGGTTTCACTGGCATATTGTGTGATGAGAACATCGACAACTGTGACCCAGATCCTTGCCACCATGGCCAGTGCCAGGATGGGATCGACTCCTACACCTGCATCTGCAACCCTGGGTACATGGGAGCCATCTGTAGTGACCAGATTGATGAATGCTACAGCAGCCCTTGCTTGAACGATGGGCGCTGCATTGACCTGGTGAATGGTTACCAGTGCAACTGCCAACCAGGCACATCAGGTAGG
s HiC_scaffold_1 107947585 813 - 233722169 AGAGCCCTGTGGCGCCTTTT--AGTAGAGGTGGAATATGAATGAGGGAAC-------CAAAGGAACACTTGCA-CGTTCCTTCTAATTTACATGTTTATACCTGGTTCCCTCGTTgaattcaacaagtatttattaaaaaCCTAGTATGTGTGTGCAGCACTCTTGGAGGGATTGACAGGAATGAAGAAATATTCTGTGTTCCCCAAAGCCAGACTTG---GGCAGAAGAGATGCACAATAATGAATTTGTACCTGTGGGTTGGGTTTGGGAGGACAGGATTCAGGCATAAGCACATAACG-GGAGATGTTCAGAAGATT--TGCCCTGATGATCAGTAAG-GAGCA-GCTGACACTAAAGCATCTTTAAAGGGAAATCAATCATTGATCACAAAGGTGTTTGACTTCTACAGCTTTATTTGGGACTCTTCATTCAGAGCACAgg-tctccaggctggccttctaAATCA--------AGCTCACTGCCTAACACTGGCAATTCTGATTATTCCC-----------TGTAGGGTACATGAATGAACTGCCTTTGGAT-TGAAGTGTGCATATTCTAGCTTGGTTC--AAGATTTCTC-TGACAAATCCTCCCCCAGGTTTCACTGGTCTGTTGTGTGAGGAGAACATCGACAACTGTGACCCTGATCCCTGCCACCACGGTCAGTGCCAGGACGGAATCGATTCCTACACGTGCATCTGCAACCCTGGGTACATGGGTGCCATCTGTAGTGACCAGATTGATGAGTGTTACAGCAGTCCGTGCCTGAACGAGGGGCGCTGCATTGACCTTGTAAATGGCTACCAGTGTAACTGCCAGCCGGGCACATCAGGTAGG

a score=41354
s chr3            98104591 1445 + 160039680 TCCCTCCTTCTCTCAGTCCCTCCATCCAGGGCCTGCTCTTTGGCATTGTCAGCTAAAAGTGACAGCTTTCTTCCTGCTCTG---TGTCTGGTGGGGCCTC---------AGGAATTTCAGGCAAAGGTAA------------GACCTTGGTAGTTTCGAAGTCAAATGC------CTCAGGC----TCCTCACAGGCCACCTGAG--------CCTAGAGGGAGGCTGCTTGCTAGACGAG--GGCCTGCTCTGTCCTATTAGGAGTTCTGGAGCTAGTTCACTGGGCAGCTACATTTCCCAGATTTCCCAGAATTCCATTTTACCTGTGAGAGGAACGATCTTGGACACAGCTTTAGCTGGAGA-CAGAGGGATACT--GTGAGAGATCAAAGGGAAATGTCTGAGTGGAAGATTAACCAGTGTGAGCCTTGCGGAGCAGAGGGCCTACTGGATACACGGGGTGATTTGT--AGGGGCTCATCCTGGACTTAAGGAAGTCGGCCTATGGAGGGGGCAGAGGCAGGGGAGTGGGGAGCTGCCCTGATTTCATTGTGTTACTT-CAAATCCATTTCTTCAAACTTGTCAAAGGTCCTGGTCTTCATCCAGGGCCTCACACATGCCAAGTTTGAAAACAAAGTCCTTTTTGAATTGCTCAAGCATACGAAAAACATCCCATGCCTTCACAGCTGAGAATGTGGGTCCCCTCCCCACATTTAGATAACTCCCTCAAAGGACTGAATAGGGCTTTGTGAAACCTTCCAAAAGCAATTTGCTTCCGGGCTGGTCCCCAGACATGAGAAATTGCAGTACGAAGGAAAAGTGAGAGATTTACAAGCAGTTGAATAGGGGCCTTTAGAATGGAGGGGCTGTGTTAGGCT-TGCTGTCTCCCTCATTGTAACAAACACGCTGGAAACCTG-GCGAGTGGTGGGTTGGCAAGAACTTATTTTCCTCTGGGATTATATCCTTGTGCCAGAGTGTATCAGGTATACTTTCCTTCAGGGACAG---------------------------------AGGCAAGAAGTTAATATTCATGGTTTGCAGCAGGCAGCATGCAGAGAGAG----------------------GCCAGACCCATTGCTGCAGCTGTTTGAAGAGTTAGAGCAAAGAGCTGCAGGCAACATACAGACTTGCTGGTCTGTGTTCAGTAGA-AAGGAGCT----GGCAGGTGCTGCCGGCCTGGCTGGAAAGTCCATTTAGGGGACAGTGTGGATAGACTGTCACGGAGTCACGATTTCTGATCGATCCAGGTATCATGCAGTCTCTGTTGGTAGTTTGATGTTT-------------GGAAGGAAGGAATCATCATAGCTTGCTCACCGTTCCTGTGGTTTCCACTGTCTGGGTGCTCAAAGGGAGAGACAC-------GCTCACTGTTAG-GGTCTTCTCTCATCTGT--CCTTTATAATGATAAACTCTTGGAATAATTAGTTCTCTTGAGTTTCAAGTCACCTAAAATGGCTTGATCTAGCATAAGGAAGAGAAAACAGAAAAGCAGCCAATTCAGCAACAGCATAG
s HiC_scaffold_1 107948811 1550 - 233722169 tctctctctctctctctctcgctgtccctgtccctgtccctgtccctgtcccttctttcctgtattttcctttctcctcttcactGTGTCATGGTGCCTCTTGCACTTGGGGGATTTTAGGGAGAGGAGACAGCCTGCTGCATATCATGGTGACTGTGAACTGGGATACGGGGATCTCATCCCTTGTCCCCACAGTTCCATTGTGTTTCCTCACCCTGCTGGAGGGCACCTGTTAGGTGTGTCAGCCTGCTGCTCCTTCTGAGGAGACTCGGAGCTGTTTTGC-AGGCAGCAGGGTTTTTTTGGTTTCACtggattctgtttt-tatatttgaagAGTGATTGTGGTCACAGTAGTGGCTAATGGTCAGAGAAGTTCTCAGCACCAGAACAAAGGCAAATGTATTAGTGGAAGCTTAACTGAAGTGTATCTTTGCTGGAAAGGAACCTGCCA-CTATCAGGGATGATTGAGTGAGAAGTTCATCCCGCACTTCAGGAAAGTGGC-TATGTATGGGGTAGAGGTAGGGAGGTAGGTAGTTGCCCTCGTTTTTTTGTGTTATTTGCAAATCCATTTTTTCAAACTTGTCAAAGGCTCTGGACTTCATCCAGGGCCTTACA-ATGCcaagtttaaaaacaaagtccTTTTTGAATTGCTCAAGCATACGAAAAACATCCCATGCCTTTACAGTTGAGAATGCCTTGCCCCTCCCCACATTGAGATAACTCCCTCAAAGGGCTGAATAGATCTTTGTGAAG-CTtccaaaagcaatttgcttctgggCTGGTCCCCAGACATGAGAAAttgcaaaggggaaaaaatctgaGTGACTTACATGCAG-TGAGTGGACACCTTTAGAACAGAGGGACTGTTTTTGGCTCTGTCATTGTTTGCATCGGTACACACTTGTTGGAAAGTGGAGTGCATGGTGGGCTGGTGAGCACTTTGTTTTCTCTGGGATTGTATCATTACGTGAGGACCTATCAGGTGTGGTTTCTGGGGAGGACAGAGAGTCCACGCTGCAAGTAGCTGTCACTGAGAAAGGCAAGAAGTAAGTTTTC------TGTGGCTGTCAGTGTGGCGATAAAGGCCCAGGATGTCTCAGAACCCTGCCAAATCCATTCCTGCACCTCTTGGAAGGATTCAGGCAAAGAGCTACA-GCAATGTAAATAATTATTGCTCTGTCCTGGGTGGAGAAAGAACTTTTATTTATGTGCTA-GGACCTGGGTGGAAAGTCATTAGATGAAGCATTATGAAGAGACTGTCACAGAG-CATGAGTCCT----TGCCCAGTTataatatgatctattttagtaG-TTGGTGTTTGTGTGAGGGTATGGAGAGGAGAGCCACGTTGCAGCTTGCTGGATTTAGTTGTGATATTCACTCCCTCAGTAATTAAATTTAGATAAACTATTCAGAGTCACTTTCAGTTGCCTTCTcttatctgtgatttttttgaTGTT--ACTGTACGAGTAATTAGTATTTTTGAATTTCATGTAATGAAAGCCAGCTTGGTATA-------GGTGAAAAAACTCattaataaacaagtaaataacaaaatag

a score=46988
s chr3            98106647 2160 + 160039680 GGCTGAGAGTTAACAA-GTTACACAGTGACAGATTTTATTGTCCTCACCAAAGCCAT--------GAAGCGGGCA--TGTGTTTGTTTGGCTGTGGGTATGTAGATATG-------------TGTCCATCTGGTTGGGGCCTGCAGCCTGGATCCTGGCAGAGATGCTGACAGTTTTGCCTATATTGCCTTTGTACCGTTTCCATGA---CAACAGAGTAGAAGGGACAAATCATGGCTAAGTATGAGTAATCCAGTCCTCTTGGCTTCTCAGTTCTGGCTTCTGTGGACTGTACT---TGGCGATGCGTCGCTTTGTTCTGATC--GGATGGCCTGGATCCCCTACAGACTTCTGACTGAGTAGCACCACAGGCGGAAGTGCTGACATTCCTGTGGTAACACAGAATCATTTCTCTGGG----TCTCTTTACAGGCCTTAATTGTGAAATTAATTTTGATGACTGTGCCAGCAACCCTTGTATGCACGGAGTCTGTGTGGACGGCATCAATCGCTACAGCTGTGTGTGCTCTCCGGGATTCACAGGTAACACTCCTTGTCTTTGGAGGGGGC-CTCCTTTAGCCCCATCAAGCTGGGAAAGGGGTCCCTCAGTGAAAATCACTTTTTCACCTGTTTCCTGTTTCTCATCGTCTCTGGAAGGTTTGCAGTCTGC-TCTGTACTTCTC---------------------------------TTTCTGTTCCA-----------------------GACC-----------------------------------------------------------TTCCTAAGTGGAAACACAGCCTTTCCTTTAGCGTTTCAGGCCACGCGTGTCTTGCTCCCTGAGAC----TTCCTAGCAGAT-----------------------------------------------------------GGTAACTTTCCATCCCC-----------------------------------------------------------------GTGCTT-------------------GGGTTAA-----------------TGCCTGCAAAGCCACCTTTGCTTCCCCACAGGCAGAGGCCAGTGCCTTCTGTAAGGCTGTGTCCAAGGTAAACGTGCATGGAAACACTGGCTGCTCACCCTGGGGTCTCGCCT-CTCCCGGGAGCCTGTTTGGGGAGGGCATAACTTGAGGAGACCACCACATAGTTTGTCTACAGTGAGCAAGATCTTTTTGCCCATGAA-AAGAAAGTAGAT---TAGAATTATTCTGCATTGTGACTCTTCCTTAGGTATGAACCTCTAGAGAGTTTGCACATGTGCCCATAGGTGAAGTATAATCCACACATTCTCTCTTCTTCCTTTTCCTTGTTAACATTAACTTTGTCATTTATGTTTCTGGAAAAATTATCGTAGAGGCTCCAGAGGAAGCCTGGGCCCT-CACTGATACCTCATATCGGTGACAGTCCCATTGTTAGGATACACTGTGTGTTCTGCTTTTTCTGGACATTACCACACATGTGCAGACAT--ATATAATATTACCCTTTAGTAACTGCCCTATGGTCATCTGCTCCCCAGGTGTGTAGCCCACTTCAGAGCTTTTGGCAGAGCCT----AAGGACAGTCAGAGCCAGGTGAAGAGAG---------------TGCTAGGTAC-------CCAGTTCCTC---TATGCCAGCGGTATGACATGTCAGGAACTTTTGTGGC-TTTGGTGGATCTCAGTTCTTCCTGGTGACTG----------AGACGCCAGTG-TGGTGAAGG-TTTCATGCCCTGACCC------ACTGAGGTAGCCCGATGAATTTGGGCATCCTGAAAACTGTT-CTCTCAAATACGTGGGAGCTGACTAAATACAC-----------------AGACCTGTTAAGT---------------GTAACAGGAAGAAAATGCCCAATTTGTATGAACGGCTTATTCTGAGCTAGGAACCAAAGATGCTGTCTCACCTCACTTAGTT----------GGGATAGATGCTACTGTTCCTGTGGTACTGAGGAGAGGGCAGAGAGCGAGAGACGCAGGGTGATGTTCCCAGTGCCCTGCAATCAGGGTCTTTCCCAGGC-GTCTACGCCAGAGCCCAGGCTCATTCC-----CATTACATGGCCAAGGGGGAGCCTGTTACGGTTTCTTCTGGGATTTATGTAAGGCTTCTCACCGGTTTTAGT--TTTTTTAAATGTCAGGGAATCATATTCTGTCTGTTTTTAACATTTAGCAAATCAACGGGGTCAAAGAGGGGGCACATAGGCTAAAAATACTCTAAAATAAACATAAGGTGTAGCATGAAACCACATAACCAAGAGATGGAATGTTTTGGTTGCTGGGTGGTGCCCCCTTCTTGGGAACTGTTTTCTGGTCCAAGAGGCTG-----------------TTTTGTAAATCGGTTGCTGGAAATGTCTAAGAGTCATGAGCCATAACTGTGAAGTATTTGGGGCTTTTCCTTCTATTTTATTTTAATCATTTCCCCTGCTGTTTT
s HiC_scaffold_1 107951374 2468 - 233722169 GGTTGAGATTTGATAAAGTTGTAAAGTTAATGATTTTAACTTCTTCATGAAAGCCATTCTTAGGTGAAATTGGCACTTGGGTTTGTTTAACTGTGGCCATGAGGGTGCGAGGAGGTAGTGACTGCTAGCACAGCTTGGTGCTGCTGCCTGGATTCCTGCCGAGATACCATCATTTTCACCGGCATTGCCTTTGCACTATCAGTATGAATTTTAAAGAGTGAAAAGG-CAAAT---GGCGAAGTATGAACAATCC---------------------CCGCAAACTGTGAATTGTACTGTTTGACAA-gtgttgctttgttctgtttaaggCTGCCCCAAACTGTCTTTAAGCTTCTTGTTGCATGGTATCAGAAGCAGAAGCTGTGATACTTGTTTGATAACATGGAGTGATTTCTCTTTGGTTCTTTCTTTGCAGGAGTTAactgtgaaattaattttgatGACTGTGCTAGCAGCCCTTGTGTCAATGGCACGTGTGTGGATGGCATCAGTCGTTACAGTTGTGTCTGCTCACCAGGATTCACAGGTG-----TGTTGCATGTACTGGGGCCTCTCCTTCAGCCCTACCATTTTGGGAAAATGA-CACTAAGAGGAAATTAC--CTTCAAATGTCTCCTGTTTCTTGGTCTCTCTGGCAGGTGTATAATCTACTTCTGTGCTTCTCTGAATCACTGTGTGacttttaagggttttttttttttttttttaccggtactggggatcgaactcacgaccgcctgcttgcaaggcaggtgcttatgccgctgagctaagccccctGCCCCATTAACTGTTTTCTAAATGGAAACATACC----------ACTTTTCAGACCACATGTTTCCTGCTACCTGAGACTTAATTCCCAGCAAACTATAAAGTTCATTGCTATTGAAGAAGCATTAAGAAGCATTTCATAAAGAGGTTAAAATGATTAACTTTATATCTTTATTAAATCTCCAACTTAGAGTCTGTCTCAACCATTTCATGTGAGGAAATGGAAAGTGCACATAaagtacttctttttttccttctttgcagGATTAGAGATCTTGAATATAAATTGCCACCAAAGCCACCTATGTTTTCCTATAAGCAGTAGTCAGTGCGTTCTGTAAAGCCATCAGCAAGATAAACTTAGATGAAAACA---ACTGCTTATCTCAGGGTCCTTCGTATTCACGAAAG-------GATGAGGTCATTATCTGAGGGGAC--CTTCCTAATTTGCCTAGCAAGA-TGAGATCTCTCTtcccagaaagaagaaagtaaatggCTAAAATAGTTTTGCA-TATAACTCTTCCTATTGT---AAACAATAGA-AGATGGCATTTGTGCACATGCGTA---------CTACAcatcccttcctctt-tttttccttgttaatATTACCTTCATC-TTTGCCTTTCTGATCAGAGCATTCTGGAAGCTCCTGAGGAGTCCTGATCTTTACACCAAAGTCTGTGATTGATA------TCATCAGAGGACTACACtgtgtattttgttctttctggACAGCA----------GCAGGCACTGATGCAGTAGTACCCTTTCATAGTTCTCATGTGGTCGTTTGTTCCCCGGATGAGAAACTTTTTTGAGAGCTTTCGTCAGAATCTATCAAAGAGAGACCAGAACCAAGTGAGGAGAATGTCTTCCATTTGATTGCTGGGAATTTTGATGTCTGTTTCCCAAGCATTTCAACAGCTTAGTGTGACTGTAAAGTAATTAGTGTCTAGTAGGTCTCAGTGATTCCCATTCATTGAAGATTTTCAAAAATCCAGTGATAGTGAAAGCTTTCCTGCCCAGGCCCCACACTAGTGATGTAGCCTGATGGAACTGCATGTCCTGAAAGCTGTTGCTTTAAGATCAGGTGGCACCAGTTAAATGCACAAAAGTCTCTGCTACATAGAATTGTCAGGTGTTGTTGCTAAATGGGTAATGTAGAAAGAATACCTAATATGTATGAAGGACTTACTTTGAGATAGACACTAAACTAAGTGCCCTGTCTCACTTAATTAAGCATAGCAGGAATGACTTAAGTCATTCCTGT-GTATTGATGAGAAATCCACAGTTCGGAGAGGTGAAGTGATACT-GCAGTGCTTTGCAGTAGGACTGTCCTCCTGGTGGTCTGAACCAGAGCCAGGGCCCATTCCTTCCGCATTGCACAGTC---------TCACTGGTGGCTTCTCTTTGGATTCATGTAAGGCCTTCTACTGGAAttacttatttttgaaatgtcagtgaatcatactatttttcttttta--attcggGAACTCAGCAAGGtcaagaaga------ata---taaaaatattctaaaataaacttAAGGTGTACTGTGAAATTACATAATCAAGAAATGGAATGTTTTGGTTACTGGCTGGCACCC---TGTTtggaactgttttctttgctttgagactgttttccttgctttttttttttttaaatcagctgCTGAAAATATCTAAGAT----------AAACTCTGAGgtattt-----tattccctttatttta----atgcctcttcttttctgtttt

a score=54093
s chr3            98110018 5418 + 160039680 [encoded data, 6231 characters]
s HiC_scaffold_1 107954831 5400 - 233722169 [encoded data, 6231 characters]

a score=4256
s chr3            98113009 138 + 160039680 CTATAAGTGCCTCTGCGATGCAGGCTGGGTTGGTGTCAACTGTGAGGTGGACAAA--AATGAGTGTCTTTCTAACCCATGCCAGAATGGAGGAACGTGCAATAACCTGGTGAATGGCTACAGGTGTACCTGCAAGAAGGG
s HiC_scaffold_1 107948247 138 - 233722169 CTACACGTGCATCTGCAACCCTGGGTACATGGGTGCCATCTGTA--GTGACCAGATTGATGAGTGTTACAGCAGTCCGTGCCTGAACGAGGGGCGCTGCATTGACCTTGTAAATGGCTACCAGTGTAACTGCCAGCCGGG

a score=3997
s chr3            98113016 140 + 160039680 TGCCTCTGCGATGCAGGCTGGGTTGGTGTCAACTGTGAGGTGGACAAAAATGAGTGTCTTTCTAACCCATGCCAGAATGGAGGAACGTGCAATAACCTGGTGAATGGCTACAGGTGTACCTGCAAGAAGGGGTTCAAAGG
s HiC_scaffold_1 107967021 140 - 233722169 TGCATGTGCCTTCCTGGCTTCATTGGGGATAAGTGCCAGACAGACATGAATGAGTGTCTCAGTGAACCCTGTAAGAATGGAGGGACCTGCTCTGACTATGTCAACAGTTACACCTGTAAGTGTCAGGCAGGATTCGATGG

a score=29930
s chr3            98116584 1656 + 160039680 agaacctctCAGTTGCTGCTGTAGCCTGGGATTCTGAGCACACCTGTGTTTGCAGTCTTGGGACGCCATCTTTTCCTCGGTTGATTCTTTATCACAGA--CTGTCATTTGTTTTCCAGGCAAGAACTGTCAAACAGTGTTGGCTCCCTGTTCCCCAAACCCGTGTGAGAATGCTGCTGTTTGTAAAGAGGCACCCAATTTTGAGAGCTTCAGCTGCTTGTGTGCTCCTGGCTGGCAAGGTAAT--------------GATGC---TGGATGCATC-----CTGCACTT-TAAACAAAGCCATC-GGCCCTCAGATGACATGGGAGACCA-------------TGCTGACACCTGTAATCTCTGTAGGGAGC---GACTAGCTGGAAGGGCT------CATAACACCTTCTCAGATTCCATCTTTATAGTCCTCAAGTAGCTGAGACCCTCCAACCCAAGTGTTTCAAGCTGTGA--------GTAGCAG-------------TTGGGAGGAGTTTCCGAAGGACCTCCTGCATCGGACCAATCAGGTGGCCTCCTGCACCAAAACACCCTAAGCTCACAGTGGACTGAAACTCACACCCACCTAAGCTTACACCCTGCCTTGATTTCTATGGGAATTTTCTTCCAAGGACT----GGCTGTTCATTCTCCTGTCTTCATAGGTAAACGATGTACAGTTGACGTTGATGAGTGTATCTCCAAGCCGTGTATGAACAATGGTGTCTGCCACAACACTCAGGGCAGCTACGTGTGTGAGTGTCCTCCCGGCTTCAGTGGGATGGACTGTGAAGAGGACATCAATGATTGCCTTGCCAGTGAGTACACCTGC-----------CCTC---------AGGGTCCCAGAGAGAG-----------------AGGGCCAC----GTTCCCTACACTGACAT---CGATGTCC------------------------------------------------------CACACTC----------------------------------------------------CAGGATC---------------------------------------------------------------TTTAAGTCTTCCTTCTGAAGCTACTGTCTTTAGAAATCAAAATAGTAGAATCTGTCTT----------------------GAGCATCTCTCTACAGCATCTTAAATGCTGACAAACTACGGACAGTGCTGTGGTAGCTTTGTGAGAACATAGATTTTTGAAAGGCAGTAAACAGACAAAAGCTACAAGTATTTTAATACCTGGTAGAATTCATCCAATTTTGGCAAAATGATAGAGAAAACCATCAACCAT---------CATGAATGTTCCTCTAAAAGT---------CGCTTCGTAGC----TTTACCTGTTCTACTTCCTTGTCTCACGCCAGCACAGACCAGCCTC-TGCCACCATAGATAAA---------------------------------TTAATACTTTATATAG-----ATGCATCTATATAGGCA---------------TGCTCTTGTCA----GTAATATTTCAGGCTGGTTCA---TGTCCATATCACCACTAGGGTCTTCCGTCTTATTGCTGAGTGG---TCTCCACTCTGGTTGTGCACAT-TGAGCATGCTCAGCCCTGAAG-----GACACTC-ACCCGTTCCAGGCCTTTT--GGTTTTAGAGTATTCACATCT----------------TAGGGATGTGACCCAAGTGGGAGCATGAGGTGTGTTCATGCTTTCATATGTACCGTGCATGAGTAGGCCGAAGGTAACTTGATGCAATTCTTTCAATGCATCTGAATGCTGACTGT---------------GCAAT-GAATTTTAGTTGTTC---TTGTGACATG-GTGCTGACCCTCATAGGGTTTCAGACTTTGGAGAGCTTTGCATTTTAGACTTTTGGATTA-----TTTTGACCTGTGCTATTGTTACTTG-------------------TTTGCTTTTCCAGTTTTTAGGCATTATAGATAAAAATGTTATGATAGGAGTTTGC-CTTCTCTT
s HiC_scaffold_1 107962341 2014 - 233722169 AGAGCTTCCAAACCACTGCTTGAG---AGCATGCTAGGCATAC----------AATTTGGGGAAATTGTTCCTTCTTTGGCTAGTTTTGTGTCTTaaaatctatcatttattttccaGGCAAGAATTGTCAAACAGTGTTGGCTCCCTGTTCCCCAAACCCCTGTGAGAATGCTGCTGTTTGTAAAGAGGCACCAAATTTTGAGAGTTTCACTTGCTTGTGTGCTCCTGGCTGGCAAGGTAATAGAATGGGGGTGGAGAAGCAAGTGCATGCATTTTTTTCTGCAGTTGTAGACAAAGTGGTCAGGTCGGCAGAAGACACAAAGGCCCTGTCAGGGCTTCTTTGCTTAC-----TAATCATTGTCAAACTCTCAGGCTTAGCAGAGGAGTTGCTGAGTAGAATGCATTGTCCA----TGTCTTGGGGGCCCTCTAGTGGCTGAAAAC-TCCAAATCAAAAGTCTGAAACCATAGTGTTCTTTGTAGAGGGAGTTTTTGTACCTTAGCAGAAACTTGCCAGGAACTTCC-----CAGGATGCCAGGGTGTCCTTC-------AAGCATTC----CCCTCCCTTGGCT-----------CCAGCTAAGCTCAGACCCCACGTAGGTTTCTGTGGGAATCAGCTTCTGAAGAGCAGGAGGCAGTTCACTGTTCCTTGTTTCCAGGTCAGCGATGTACGGTTGACATTGATGAGTGTGTCTCCAAGCCCTGCATGAACCATGGTCTCTGCCATAACACCCAGGGAAGTTACATGTGTGAGTGTCCTCCGGGCTTCAGTGGTATGGACTGTGAGGAGGACATCAATGACTGCCTTGCCAGTGAGTATCCCAGCCAGCTGCTAAGCCTCGAAGGAAGAAGCAGCCCAAAGGGAGCAGAAGAGATGAACTCAGGGGCTGCTGCTGTCTCTAATGCTGACGTTGGCAATACCCGTCAATTTTTTTGGTGGCCCTGGGAATTTAACAAAGGCCTTTCAAAATTAGCAACATAATCATTTTgagttttgagatagggtgtctTCAAGTTGCTCAGTCTATGTTCAGGTCAAGATCCTCTTAGCCTTCCTAGGAGTTGCAGttttaggcatgcaccaccacacatggTGCTTGTTTGTTTTCAGATCTTCCTTTTGAAGTTG--GTCTTTAGGTACCAAGACAGTggaatctctttttttaaagcatttttagattttaaagcatttttagatggcATTTTGAACATTGAACAAATAGGAACAATGCTGTAGTTTTCTCGT------ACATATTTTTGAGAGACAATACA----------CTGTAAGTATTTTAA----GTATATAGTTCATTAAATTTTGG-AGCATGATTACCAAAACCACCATCTATGATAATGAACATGTTTGTCCCTCTACAAATATTCTTATCCGGTT-GTAACTTAATTTTCCATCTCATTTTTCTTGTCTCAC-----CAGAGATTTACTTTAAGTCACTACAGAAGAgctggcattcttttttttttttttttttttttttttactattttatataaGTAACATGCTCTTTTTGAGGGAGAGATTCTGACTTGTTGCAGTTGGCATGATATAATATTTGTGATTGGTACATTTTGCTCTTTGTACCTGTAGttaattctgttttattaatGAGTAGTATTTTACTATATGGATATATAGATAAGAGTAT-CCCTTATCTGAGGTGCTTGAAATTAGAAATGTTCtagatttttttggattttacaGTTTTCGTATGTGCACAGTGAAACAATACAAGGGTGTTACCCATGCctgaaaatgaaattcatttatgtttgtatGCACACCTTTCAT-ACAAGCCTGAAGACAGCTTCATGTAATATTTT-----TACCTGCATTTTGACTGTAACCCACCATCATAAGAAATAGGATGTGGGATTTTCCATTTGTGATACATGTGTACAC------------TCAGATTTTAGA-------GCATTTCAGACTTTTCGGGTAGGGATTCCCACCCCGTATTTTAGTTCACTGGTTAATGaccatttaagtttttttttttccagttctcagGTATTACAGAT-AAAGTGTCATGATaggtgttttcatttctctt

a score=59041
s chr3            98120481 5013 + 160039680 [encoded data, 5782 characters]
s HiC_scaffold_1 107966689 5121 - 233722169 [encoded data, 5782 characters]

a score=3806
s chr3            98120768 170 + 160039680 CCTTCTCCTGCCAGTGCCATCCTGGCTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGGCTTCCACGGAGTCCACTGTGAAAACAACATT
s HiC_scaffold_1 107972676 163 - 233722169 CCCTTTCTTGGCAGTGTGTTCCAGGATATCAGGGTGTCAACTGCGAATATGAAGTCGATGAGTGTCAGAATCAGCCATGCCGGAATGGAGGCACCTGTGTTGACCTCGTGAACCATTTCAAGTGCTCGTGCCCACCAGGCACTAGGGG-------TATGAAATCAgcatt

a score=4349
s chr3            98124168 200 + 160039680 TGCCAGCACTCGGGCATCTGTATCAATGCTGGCAACACCCATCACTGCCAGTGCCCCCTGGGCTACACGGGGAGCTACTGCGAGGAGCAGCTTGATGAGTGTGCATCCAATCCATGCCAGCACGGTGCCACCTGC------------AATGACTTCATCGGAGGATACAGATGTGAGGTGAGGAGATGGCTTAGCCCAGAGGGCTCCAATGA
s HiC_scaffold_1 107944641 202 - 233722169 TGTGAGCATGCAGGGAAGTGTGTGAACACAGATGGCGCCTTCCACTGCGAGTGTCTGAAGGGCTATGCAGGGCCTCGCTGCGAGATGGACATCAACGAATGTCACTCAGACCCCTGCCAGAATGATGCCACCTGCCTGGATAAGATAGGTGGCTTCACCTGCCTGTGC--ATGCCAGGTGAGTGG--------GCCCATAGAGCTGAAATGA

a score=21250
s chr3            98125861 791 + 160039680 GAAAATGACCCTCAGAACATACAGTCCT-CACTTTCCTTTAAAGTGGCTTTGGGGGGCGAAGGGGCTAGAAGAGGAATAGGTAACCG----------------TGACCCTGCACCAGGAAGC--AGCAGAGAATGCAGTGGTT-ATAGAGGGGCGGATACACAGTTGCTTAGTGGGATGGAAGCAAAGTCATGGTAACCTGACC--TCTCGCTTGGCCCTGTGGTCGGTCTGCAGCAGTGACCCCTTTCTCCGTGTCCTT-----------CTATCCTGACAGTGTGTTCCAGGATATCAGGGTGTCAACTGTGAGTATGAAGTGGACGAGTGCCAGAACCAACCCTGCCAGAATGGAGGCACCTGCATCGACCTTGTGAACCATTTCAAGTGTTCGTGTCCCCCAGGCACCCGGGGTATGCAGTCTTCAGTCTTCGTTACTCTTTCC--ACCAGGGACATTCCCT---CTAGGCATACATTCTTAGTGCTGAAGCAACTTTTAAAATCTGAGACAATTTAAAGAAGACTAGCTTCATTGGAGCCACTTA---------CTCAGTTATCTG----CTCTCACTCTGATCTCC-TGCCAGCTTCCATTCAGGTTT------------GGTTGTTTCTTAGCTTATGTTCAGGAAAACAGAATGCAGAATGAACATAACCCTAGA---------------TAACCAGGTTTTTTTGGTGCTTCAAGTGAAATCAACTGTCAACCTTTTAAAGGAAGCGAATCCACATAGGCCTGCTTTTTAATTGTTTAAGCTAGCCAAGTC-TGTCCATAGAACG--AGGGAATCTATGAGATGTGTTTGGCTGCT----------GTCCTGGGAGGCAGCAGACAGGAGGCTG
s HiC_scaffold_1 107972420 841 - 233722169 GAAAATAACCCTCAGAAAATTTAGTCCTTCTCTTACCTGTAAAGTTGTGTTTTCAG---------CTAGAAGAGAAATAGGTAAATACTGCTAAGCTGGAGATTGGCCCTGCAT-AGGATGATAAGCAGAGAGTGATATGCTTCGTACAGGGG--AACCTGTAAGAGCTAAG-GTGAAGGGGACAGGGTCATAGTAGCATGCCAGATCTCGCTTgcccttctgttctgttttcactCACAACCCAACATTCCGTGTCCTTTTCTGTTTCCCCTTTCTTGGCAGTGTGTTCCAGGATATCAGGGTGTCAACTGCGAATATGAAGTCGATGAGTGTCAGAATCAGCCATGCCGGAATGGAGGCACCTGTGTTGACCTCGTGAACCATTTCAAGTGCTCGTGCCCACCAGGCACTAGGGGTATGAAATCAgca-------ttacttttttcttatctAAGCCATTCTCTAGGCTACAGATCCATTCTTAGTATTGAAGGGATTTTTATAAATT-AGATAATT-------AACTAGCTTTGTTAAAAGCATTTAGTTCTGCGTCACAGTAATGTAAGCCATTTTATCCTCTCCTCTGTGCTAGCACTGATTCATGTTCTCAGTTCTTTTGGGTGGTTTGACATCTTACATTCCAGAAAACAGAATGTCATACTGATACACTGTTACAACAAAATTAGTCTACTCAGCAAGATTTCTTGGTGCTTCAAATAAAAGCAGCTAGTAGTCTTTTGAGTAAA--TAATTCACATTTGTCTGCTTTT---GTGTAGAGGCAAGCCAAGTCTTGCTTCTAGCAGGGAAggcaatgaataaaatgaaagcatctgctttctttttcaaTCCTGGGGG---------AGGAGGCTG

a score=30776
s chr3            98129939 1794 + 160039680 atttatccatcttttttatggctgcttgcatctgagtggtagttgattttatcctccatgcttcaagatttataaagacattcttctgtgtttttatcctggaCTAGAATCCTGAAGTGGCTTTCCCATGTGAC-----TGGATGGT-------TGATGTTTTCTACAATGACTTGAGATGGAACTTTGATCAAATTCTAAGCTCCGGTGTGCATTTGGGCTGTTGTTCTGTCCGTCGATTCACAACAAACTTTTAACCATGAA---------GGACTCTTTTTCATGCTC----TCCTGGCTGTGAT--TTGGTTTTTCTATATCATTTTTTAGTCAGTTTGC-CATTAAAAAGTATTGCTGATATCTTTTT---GAGATCATATTACCTTCATATATAATACAGTGAGCATGCCTTTT--------CATGGAGTC-GCATAATCAGATAATG-TATGTCTTCCATCTGTCCACGTCTCCTCTGTCTGTCCTTCAGAGCACTT--------GCCTGCAA----GGCCACACA-GCTTGCTCTGAT-GCTCTCAGCCATTTGCCTTTTGACACTGCTGCTGACAGTGAGG-----TACATCTGTGTCTCCTTCCCTTTTTATGTCTTGCTTCTCTTAAAGTATACCA-AAGTGCTATA---------------GAAGTATCTTCATTTTTAACCTTTTCAAATTACCTTGTGGAGTA--GTCATTGAT----TTTGTTGTTTCT--AAACGTGTTCACAGATATTTTAACTAGATGGCTC--CTAGATCTTCAG----TGTGTTACTTAGCCAGAATAATCTTCAAATTCTTAGCAAGATATTTCCACTCTGTTGTTGTCTTAAATAAAAGATATTAGTGTACCTATCCTCTTTTAAAGAAAAAAAAAGTCAGTGTTTATAAAACATAAAATACT-ATTGCCCAAAATCTAACCCCAG--CATAGC----------------CTATGTAGTGATTAGATGTGCTCCCTGTTGAACTGTTTC-ACAGTTT---GATGGGAGTTGATAAGGGGTGGAAAACTCCCACAGTCTCCTGAGCTTT----------GACTCCCGTGTGCTTGCGATGGCGCAGTTGTCCCTGCTGCTCTGGATTGGGTGAAACACAAGTGGAGCCTCAGGGTGCAACTTCCT----CTCCTGTTGCTCCCCGGGAAGCAGCTGCACGAGCTGCATGCAGCTGGCATGGGCTAAGAATATTTTTTGCCTTGCCCAATTTAAAAGCTCCCACTGTAGATTAAGGATTATACTCAAATTAATC--------TCTAAAG-----CCCACAAGGGCATTTATCCCTTGCTAATGGC-GGGTTCAGTGGATTTTTGTAATTCTGTCTTTCTTCTCTCAT--AGGCCTGCTGTGTGAAGAGAACATCGATGAATGTGCTGGGGGCCCCCACTGCCTTAACGGTGGCCAGTGCGTGGACCGGATTGGAGGCTACACTTGTCGCTGTTTGCCTGGCTTTGCTGGGGAGCGGTGTGAGGGGGACATCAACGAATGCCTGTCCAACCCTTGCAGCTCAGAGGGCAGCCTGGACTGCGTTCAGCTCAAAAATAACTACAACTGTATCTGCCGCAGCGCCTTCACGGGTGAGAACCTCTCAGCCCTTGCTAGTCTGATGTGCA-----GGAGTCTTGAGTAAGCAAACCATGATCTCTATGGAAATGTCTGACCTCCTGCAGCAAGCCAAGACCAGCTTAGGGCAAGGACGCAGGGCCC--AGGTTTCCTTAAGTCTTTATACCATGGGCATCATAACTAGGCTCATCTTTACCTTTGCTTTTCTGAGAGACTCTTTTGTGGTATATGGATTATATCATGCT------TGGCAAGAATATGAAAAATAATCTGTTGGGGTACAGGGCAAAATTAACATTTTTCAATTGAGATAAATTAA
s HiC_scaffold_1 107975938 1793 - 233722169 ATATCCCTGTCCCTTTTGTGGCTTTTGGATCTTAACTTGTAATTAGCAATACCTTGCATACACTAAGGTT-ATAAAGGAATTCTTGTATA-----ATCAAGTATTAGAATCCTGAAGCACTATTTCCATGTTGCGATTACGAATAGTAAAAATTTGCTCTTTTGTGCAATGACTTGAGAT------TTTATCAAATTCTAAGTTTCCATGTATATTCGGA-TGTTTTTCTGggcttccttttttattctattgtt--cCGTTAACCTATCAGTGGTTTGTTTTACTTGTTAAAGATCTTGTTTTCCATGGTTCATTTCTCTATATGGTTTTATAATCAGCTTGTATATTTAAGAATCCTTCCAGTACATTTTTATTGGGGTCACGTTGAATC--TGTGGAATATAGAGAA---ACCTTTTATCTTTCACAGGGAGTCCTCCTTACCAAATTATgatatgtctt---tttatttaagtTTGCTTT-TATGTGTCTCAGGATAATTTTAAAGTTGTCTTCAAATAAGGTAGCACACACTCATTAAAATTACTCCtaggtattttatgtttttagttgCTATTGAAAATGAAACTAacttcacatttctttttcttcctttttaactcTTGTTTCTTTTAATGTATACCATAAATGCTGCAAATGGCAGGAATACCGAACTAGttacttttgtaa---tttaaaattga-TCATAGAATAATGtctatgataatttttatttttttctaaaaaatttttgctAATGTTCATACTATATAGCTCATTTAAATTTGTGGAAGTTCTGTT-TTTAGTTAGAATAACCGTT-----------------TTTCCtatgtattgtt--tttaaataaggtAGAGTagtatac------tattttaaaaaaa-------tcagtgactataatagttaaaatatttactacTCAAAATTCAGTTTTAGTTCATATCAATATTTTTCAGTTATCAGTAAATTTACTAAATTAAATCCTTTTtgaactatttttatattttttaaattgaaattaa----------gaTACTC----AATTTCCTTGCCTTTAGATGTGACAGACAATAGTACCTCCACCACAG-GCTTCTGTCCCT-TTGTTCTG---TGGGGAAAAGATA---GGATCCCTGGTATGTGCTTTTCCTTTCCTCATGCGGCTCATCAGGAAGGCG---------------GCAGCTGTCATAGACCAAGCACGCTTC--ACCCTGCCTGGTCTAAAATGTTCCACTAGAGATTGAGGAGTGTAGTCTGATTGATTGAGTGTAGTCTGATGAAAGTCCCAGGAAGGTGGTTGTCCCTTGTGGAGACCAGGGTTccagatattttcaaaattgtgtgTCCTCTCTGTCCTCCAGGCTTATTCTGTGAAGAGAACATTGATGACTGTGCTGGGGGTCCCCACTGCCTCAACGGTGGTCAGTGTGTGGACAGGATTGGGGGCTACAGCTGTCGATGCTTGCCTGGCTTTGCTGGCGAGCGATGTGAAGGAGACATCAACGAGTGTCTCTCCAACCCCTGTAACTCCGAGGGCAGTCTGGACTGCATCCAGCTCACCAACAACTACCAGTGTGTCTGCCGAAGCACCTTTACTGGTGAGGCCCCCAGAGGCTTT----------TGGGCACAGATTGGGCTCTGTATGACTTGTCCCAGA---CCACAGAGAAGTTTTTCCT-GTGTATAGAAACCAGACCAACTTAGT-------TGGAGAGCCCTTATGTTTTGTGAGGTCTATGCACTGTGGATGTT-TAACCAG-----TTTCTACCTTTATTTTCCGCAG-------TATGTTATGTATTGATTATGTCATGCTACTGTAGGGCAGGATTGaacaaaacaacattt-----------------------ttttttatttgtggcAAATTAA

a score=68841
s chr3            98134260 2076 + 160039680 TTTTTATTGGAGTTTGTT---TCACTTTTCTGCCTGTCACTTTGGGGGTCAGGCTGGGATAGATAGTTCTTGTGTGCTTGCTGTCTTAGCAAGACACTTGAGGGACTCGTCTGAGTAGAGATGGGCCCTTTGTGTTGAGGTCCACAGAGTGTCCTCTCGCTA---------TCCTGTAGGCTTAGAActgccctgccctgccctgccTCTTGCTGCCTCTGAGGCTGCTTCCTATCCCTTAGGGTAGTGTTTAGTGTCTCTGAGTTAATAGTTATACCTTGTAAATCTGCTGTTCATGTTCTCTCCTAAGGCCGGCACTGTGAAACCTTCCTAGATGTGTGTCCCCAGAAGCCTTGCCTGAACGGAGGGACTTGTGCCGTGGCTAGCAACATGCCCGATGGCTTCATCTGTCGTTGTCCCCCAGTAAGTGGCCTGCTGCTGACATAAGGGATGCACCGCCTTCCATATGCTCT--AGGGAGCTGAGATTGAGCCTGTGTTT-TCGTGCCCCCAGAAGGATGCTAAGGTGTTAGTGTCTTGAAGGTGGTCTGGGTCTTCCCTGGCTCTAGTTGTTCCGCTGCGCTCAGCAACTAAGCTTCCCAGTGAAGCCTGTCAGCCTTCAGAGCATTAAGTGGGAA-CCACAAG---TGGTCTGCTGTCCCCCTGAAATGGGGCCAGCGCCCTTGGCTTCCCAGCCTAGCCCTGGTGCTGTGGCATGGCGGCCTCCCTGCCCCGCTAGGTGAGCGCCATTCTGCTGCTCCTGTCCTTTAGCAGTGGCCATTGG---CAAGTAAGCGCTTCTCAAACGAGAAGGAAGCTTGATGC-AGTT-TTTGCTGTGCAGAGGCCTTTGCCAGTGCCAAAGGCCAGAAGTCCCCTCACACAGAGA------------------------------------------GTGCCATGTAG--------------------------------------------------------------------------------------GGCGATA----------------CTCAGAGGAC-ACCTGTCTAGTTAGGACCTTAAAGTGA--------CAGCCTG--------CCACATTCATCCCGTG-AGCCATCAGCCCTCACCTGTTGACTGATCTGAAGAGGTTATTTCTAGAACA---------------------------------------CTGGTGAATATTACCCGT----------------------------------GGGCAAGCTCTTAAGCCCTTCTGCCATCCTCATTTCCTTGCCGTGTCATACAGGGGTTCTCTGGGGCGAGATGCCAGAGCAGCTGTGGACAAGTGAAGTGCAGGAGAGGGGAGCAGTGTATCCACACTGACTCGGGACCTCGCTGCTTCTGCCTGAACCCCAAGGACTGCGAGTCAGGATGTGCCAGTAACCCCTGCCAGCATGGGGGCACCTGCTATCCTCAGCGCCAGCCTCCTCACTATTCCTGCCGCTGCCCTCCGTCGTTCGGGGGCAGCCACTGCGAACTCTACACAGCCCCCACCAGCACCCCTCCTGCTACCTGTCAGAGTCAGTACTGCGCCGACAAGGCTCGGGATGGCATCTGTGACGAGGCCTGCAATAGTCATGCCTGCCAGTGGGATGGAGGTGACTGTTCCCTCACTATGGAGGACCCCTGGGCCAACTGCACCTCCACTCTTCGCTGCTGGGAATACATCAACAACCAGTGTGATGAGCAGTGCAACACCGCAGAGTGCCTGTTTGACAACTTTGAGTGCCAGAGGAATAGCAAGACGTGCAAGTAAGAGCCCCGGG--CCTCAGAGGCCGAGGGGGGCTGTCACTAACACA-CTCAGTCTCCTGTTCTTGCTCCTAACTG----CTCGGGTGCTTCGGCCCAAGCCGCCTCTGCCTTTCAGATGGTGCCAGCCTTGTCCCGGTGCACGCTG----------CCCCTTGCTGACAGAGGGCTGGGACTGCTCACTGCATAACATCCCCTCTCTCTGCCTATCTCTGCCTTCTCACATGCTGCTCTTGCGACCG--TGGGGGAAATAA-TCTTGGAAGTGGCGTTGC-CACTCTCAGGCAGCCTCCAGCCTAGCCTG-CTGCAGGATGGATGGAAAGGTCTGTACCACTGTCTCCCTGCTCATTTCTTTCCTTAAGACTAGCTTTC-CCATCTAG-----TTAAGAAGCGTGAACTTAGGGTGAGCTCGGGCCTCTTGGCTCTCTCTCCTTGTCGTCAGTGTTGTAG--ACAGAGT-CCTTGTGG-----------ACGTTCCTATTAACTATTGC-----ACTTCACCCCAAGAGAGTCTCAGCAGCTCTGTGAG
s HiC_scaffold_1 107977971 2255 - 233722169 tttttaaaaaaatgtgctcAGTCACTTTTTTGCC---CATTCTTGTGGTTGTTTTGGGA-ATGTGCACCTTGTGT--TTACTGTGTAGACAGGAGGGCTGGGGGG---GTCTGTATTAATGGTGGTCCCTTAGATTGGCATTTGTGGAATATTTGCTTGATCGCCTTTGATTCCTGTAGGTTTAGAACTGAGCTCCCATCCCTTGCTCCAGTCTGTGCGTG-----GCTCCCATTGCAGTGGGGTTCAGTTCAGTAACTTCACGCTACTATTTCTGCCTTGTAACACTGCTTTTCATATTCCGCTTTGAGGCCGTCACTGTGAAACCTTCGTGGATGTGTGTCCTCAGAAGCCTTGTCTAAATGGAGGGACTTGTGCTGTGGCCAGCAACATGCCCGATGGCTTCATTTGTCGTTGTCCTCCAGTAAGTAGCCCACTACTGAT-TACGGGGCTTGCCCTCTTCCATACAGTCTGCAACAAAGAGAGATTAAAACTGGGTTTCTCAAGTTCCT----TAGTGTGGAGATTTCTGTTTC--------AGCTTGGATTTTTCC-ATATAAAGCTGTTTAGATGGTCCTGGGGAATGTGC----CATTAGAGTCT-TGAACCTTCAGAACACTAAGGAAAAAACCACAAGAAGTGGTGGGATGTCCTCTTGAATTAGAGCCA------CTGTCTGCCCAGTTTGA----------ATGGAACA------------------------------------------CTGTTCTTGAGCAGGGACCTTTGGGAGCAAGTTATGACTT---AAACTAAAAGAAAGCTTAATTCTAGTCATTTGCCGTGCAC-------------TGCCAAAGGCTAAAAGTTCTCTAAAACAGAGATCACTCTATACgagaaaaaccacaaagaaatacaagaatgCAGTGAGATGTGGAATTCTTCTAGAGATCTAAAACTTCCATAGTTCTCCCCACCTAACCATAATGGGGGTGGGCTAAAGGTGATTGGGGAAGTGCCTGTGGCTATAAGGTTGCCCAGCTCTTCTCCTAGCATGATCTGTGGACTTAATTTCTAAAAGTAAACTCTCATTAACATGAGAAAACTCCACACTCACCCCATGGAACCTTCGCTTTTCATCTGTTGGCTGCCTCAAAGATGTCCTGTCTAGAATATGGCCCAGGAGGCAATGTGGAGGAATCTTAAACTAAGGTCTAGTG--TTTTATCTGCCTAATACGGAGGAGAGGAGGTTAAAGGGAGAGTGGGGCAAACCTTCAAGTCCACCCACCATCTCCATTTCTTTGCCACTTTCCACAGGGCTTCTCGGGAGCCAAATGCCAGAGCAGCTGTGGACAGGTGAAGTGCAGGAAAGGGGAGCAGTGTGTGCATACGGCCGCGGGGCCCCGCTGCTTCTGCCCCAGCCCTCAGGACTGTGAGTCGGGCTGTGCCAGCAGCCCCTGCCAGCATGGGGGCAGCTGCTACCCACAGCGCCAGCCGCCGTATTACTCTTGCCACTGCTCTGTACCGTTCGGGGGCAACCACTGTCAGTTCTACATGGCCCCCACCAGCATCCCTTCCGACATCTGTGCCAGTCAGTATTGTGCTGACAAAGCTCGAGATGGTGTTTGCGATGAGGTCTGCAACAGCCATGCCTGCCAGTGGGATGGAGGTGACTGTTCTCTCACCATGGAGGACCCCTGGGCCAACTGCTCCTCCCCATTGCCTTGCTGGAATTACATCAACAACCAGTGTGATGAGCTATGTAACACTGCCGAGTGCCTATTTGACAACTTTGAATGCCAAGGGAACAGCAAGACTTGCAAGTAAGGGGACTGAATTCTACAGAAGCTGAGGGACACTGTCACTAACCTGCCTTGATTTCTCACTCTTGCTCCTAACTGTTAACTGCAGTGTTTCAGCCCAAGCTGCCTCTGCACTTCAGACGGTGCCAGCCCTGTCCCATCACATGCTATCCTGTTCTCTCCCTTGCTG-CAGAGGCCAGGGA-TGCTCGTTGCATAAACATCCCCCTCTCTGCCTATCTCTGCCTTCTCACCTGCTGCTCTCGTGATCTCCTGGGGGAAATAACTTTTGGAAATGATGTTACTCACGCTCAGGCAGCCTCTCACATAACCTGTCTACAGGATGGATGGCAAGGTCTGTACCTCTCTTTTCC--CTCACTCCTTTCCCTGAGACTGACTTTCACTGTCTAGATTGATCTGAAAGAATGAGCT-------AGATTAGGGCTTTTAACCCTTTC-------AGTCTTTGTTGCAGTTACAGGATGCTTTGTGGTCTACACAATAACTATTCTATTAACCATTCCATCTAATTTAACCCTAGTTAATTTGCAGCTACCTTCTGAG

a score=67491
s chr3            98136776 3114 + 160039680 CCTGTATGA-ACATCTCTCTGCCCCTTACCTTCTGTAATT--GTCTTACTCCAGAAAGAGAAAGAAACAGACAGTTTTGGCACACTCTTCTGAATAGCA--CTTAGATAGTT----GGAGGTCTGGGACAAGCTTGGACTCCTTCTGTTTCTAGAACCCTTTGCTCT--GACTGAGTCAGTGGGGAG-AGGGAAGTGTGAGCCACATTGACTTTGGCTTCAGATATGCATTCTTATACAAAATTCTGCCCTTGTAGTATGATTAGTTCAGTGGGACCTACTAAACACATGCAGGATGATGGGTATAACAATATTCCCCATTCCAGGGATAACGTCGAGTGCCATAGCTGTATAGCCCATGGTGTTGGAGTGCATGATTTATGGGAAGTTTCTCTAGACATTGATGTGCTGAAAATGAGCCAGAAAAGATGGGTAGGAAAGTGCTCGGTCATTCTGAGTGGAAGCCGAGGCTG----------CAGTGTGTTCTGATGCCCTC----CTCCTCTCTCCTGACTAGGTATGACAAATACTGTGCAGACCACTTCAAAGACAACCACTGTGATCAGGGATGCAACAGCGAGGAGTGTGGCTGGGATGGGCTGGACTGCGCTTCGGACCAGCCTGAGAACCTGGCAGAGGGCACCCTGATCATCGTGGTGCTCCTGCCCCCTGAACAGCTGCTGCAGGATTCGCGAAGCTTCTTGAGGGCCCTGGGCACCCTGCTCCACACCAACTTGCGCATTAAACAAGATTCTCAGGGCGCTCTCATGGTGTACCCCTACTTTGGGGAGAAGTCAGCTGCCATGAAGAAGCAGAAGATGACACGCAGGTCTCTTCCTGAGGAGCAGGAGCAGGAGCAGGAGGTGATAGGGTAGGTTTGTGTTTCTGGA----CTTAGAAGTTCCCAAAGGACCAGCATTTCCAGGCCAGTTCATACAGCTGGGCACTTTGATCC-CTAGTACAGAT----ACTCAGCCCATCCAAATGAAAAGCT----CAAGTAGAGT-ACCCCTCATTTAAAACACACATCTTGGCCT---CTTAAATCTAAGGATACAGATCTGCCTTGACTGAGGGGTCC-TAAAGATCAGCT-AAGCAAG---AAAGATGCAGGTATGAGAAAGGACTCCTCAGAT-CTGAGATTCGTAATGTTTCTCCAGAGTTGCC---------------------------------------GA----GAACCACATTCATA-------------------------------------------------------------------ATGTG----------------------------------------------------------------------TCTTTTGGGTTCATTATTGCCTCATTTTCAAGGCCCCC------CTTCACGCCTGTGCTTGACCCGAGCAGTAATCCTCAGTGGGTGGGCCTGTCGTTCACGCCCCACTGTGTGTTGATGCT--CTGTAACTTTCAGCCTTTTCC---TTGCTGAGATATGAGTGTAGACACATAGGAGAACAAGGG------------------------------GGCACCAATCTGCGCTGAGCAGGCGGG----GCTGGGGGAGCACTAGGACCGCTTCCCCAGTTACTTGTTATGTGTCACCCAGCCAGGGGCTTATGTCAGCTGGACATGAGCCCTCCCAGGCAGGAGTCCATGTTCAGCATCTGAAG------CATCCTGCTTTCTGAGTTCTTTCT-----------CCCGAAGGTGGAAAGCTTGATGCTGAAGGAGGGGAGGGTGGACCACGTGAGCCT------TTCTGACCGAGCCTGCCAGACCT-----GACCCTTCGTTT------CTTCCCCCCATTCTCCCTCT----------------AAGCTCTAAGATATTTCTGGAGATCGACAACCGACAGTGTGTTCAAGATTCAGACCAGTGCTTCAAAAACACAGATGCGGCAGCTGCTCTCCTGGCTTCTCATGCCATCCAAGGGACCCTATCCTACCCTCTAGTGTCTGTTTTCAGTGAGTGGCATTAGTGCT---GGAGTGGGGCTGGGAAGGGCCTTCACTGGGGCTCACCCTT----------------------CTGGTA------------------------------------GGAAGAGGTTGCTGTTTCTACATCACTGTCCCTAT--GTCTGAACTCTCAGGTGAACTGGAGAGTCCAAGAAACGCCCAGCTTCTCTATCTGCTCGCGGTCGCTGTTGTCATCATCCTGTTCTTCATCCTGCTGGGGGTCATCATGGCCAAGCGGAAGCGCAAGCATGGCTTCCTCTGGCTGCCGGAAGGGTTCACCCTCCGCCGAGACTCTAGCAATCACAAGCGCCGTGAACCTGTGGGACAGGATGCCGTGGGGCTGAAGTAAGAGGGCTTTACAATAAGACACAGTTCACAGGGAGAAGCAGAGATGAGCAGATGGGCATA--TTACTGAATCATAATCTCAAATTCTAAATTC--ACCTTTAGTCACCTTGACCACAGCTCCTAATGGCTTGTCTAGGTCTTT-------GAGTATGGCCGCCTC-TTTCTGTGCACACCTGACGAAGTGCCGCT-------CAATGTTTGAGTGGGAGAACACTCAAAAGACATGGTCTT--TTAGTGAGAAGAGAAAGAATGAGTGCTCAGAAGTGTCACATCTCACATTGCCCATcagagttggtgtggtggccctgtaggtgaaagtgcccccgccacgtctgctgacctgagtgtgatccccagtgcccataagctagaaggacggaagtgacttcctcatgttgtgctgtgaGTGTGTAATATAATTAGAgggctggagggatacttcagtagtcaagaaaggaactgacctgggttcagtgcccagcacccatgctgggcagcttacagcccctgtgattccagctgccacgggatctgtagacacctgaactcacatgctcagatacacacagacatagacacttaattttgaaaaatgttaatataattttgaaaaagtgctgtgcatcctatcccgttggacagagtgagaggatgtgtgggagtgctggtgaagtgcagaaagctactgcgtttgcccagctgtaacctctcctcttgtttctcccctg---aatatcatc--agaaatctctcCGTGCAAGTGTCAGAGGCTAACCTGATTGGTTCTGGGACAAGTGAACATTGGGTTGATGATGAAGGACCCCAGCCAAAGAAAGCCAAGGTAAGCTGTCTTAGGAAGCCATGTTACTAGCAGTCATGTGACCACATTCTCAGTGTGTGTCTTTCCTGGAGC-------------------------------------------------CCCATCATCGGCAGGGGCCCGTAGAGCACAGTCTTTGTGGC----------TCATGTATGTTCTTCAGGAAGACCTTTTAAATAGTAAAGCCAGCCTGCCTTCTGGCTCAAGTGTCACACTTGTGTTTACTGAGTCAGGACTGGTG
s HiC_scaffold_1 107980264 3110 - 233722169 CCTATATGGCACATAACTCT---CCTTACCTTCTATAGTTTGGTTTCATTACTGAAAGGGAATGAAATGGGCCATATTGACAAGTTTCCCTGTATAACAACTCTTGATGGTATGGAGGAAGTATGGAGCCA-CCTGGAACCTTTTACTTCCTAAAGCCTTTTGGTTTTGGGAGAAGTGTATACAAAGTAGAGAAGCATTAATCAAGCTGACTTTGACTTCAGAC------TTTTGTTTAAAAGGCTGACTTAAGATTGTGA---GCTGCATAGGAGCCCCTGAGTCCGTGCAGCATAATCAGTA--ATGTTGTTCCTCATCGATGGAGCA--GTCAGTAGTC----TTGCATGGCATA--------GACTATATGATTCCAGCACAGCTTCACTGGGCATTTGGGTCGTGATA-CAGGCCATAAAAGATGGATAGGAAAATCCACACTAGTTCCAAGTGGAAAACTAAGTAGATTTCTAGTCCAGTCTGAACTTGTTTCCCTGTAATTTCTCTCCTCTGCCTAGGTATGACAAATACTGTGCAGACCATTTCAAAGACAACCACTGTGACCAAGGATGCAACAGTGAGGAGTGTGGCTGGGATGGGCTGGACTGTGCTGCTGACCAACCTGAAAACCTGGCAGAGGGTACCCTGGTCATTGTGGTGCTGAtgcctcctgagcagctgctcCAGGATGCTCGCAGCTTCTTGAGGGCACTGGGCACCTTATTGCACACTAACCTACGCATTAAGCTGGACTCACAGGGGCTCCCCATGGTGTACCCCTACTATGGGGAAAAGTCAGCTGCCATGAAGAAGCAGAAGTTGTCACGAAGGTCTCTTCCTGATGAACAAGAACAGGAG------GTGGCTGGgtaggtttttggtttttaaacttcttaaaagttttta-------------------------tataAAACTGAGCATTTTGGTACACAAGCAAAAGAGAGAACCCAGCCTATAAAAATGCAGAACTTAAACAAATAGAATGACCTACCACTTGACACAAGCCTGTGATCCAGTACTTACGTTTAAGATTAAAGATTTGTCTTGATCATGGAGTCTAGAAAGGTAGACTGAAGTAGGTGGGAAGATGTTGGGATCCCTA--GTCTTCTCTAATGCTGGAATCCCTAATCTTCTGCCAGAGTCACCTCAAAACCTTTATTGTTGAAtactcttttttgtgtgtgtgatactgagctacatccccagccctttttattttttattttgagacaagatcttactaagttaaattgctcagactgagcTTCAAAtatgtgattctcctgcctcagcctctcagagtgctggttattataggcatgcaccaccatgcctggctgtgtcTTCTCTTTTGTGTTAATCATTGTCTTATTTTCAAGACCCCTTACCTGCATTAAACCTGT--TTTACAAGGGCGATAATCTTCAGTAATT----TTGTCATCTATACTTCAGTGTTTGTTTATATATACTACAATGTTCAAC--TCTCCAGATAGCTGAGGTATGAATATAGAGACCTAGAAGAATAAGGGCCCAAAACATTCAGGGTGCATTTTTAGCATATCACTGAGTGCCACTGAACATGTAGGAAAAGATGGAGGATCACT---------------GTACCATGTTA--------------AGGGAGTTGTGACA-------------CCCTCCGGGTAGGAATTAGTATTTAGAATCGGAAGGGACAGAGTCCTAATTTCTGAGGCCTTTCTGAAGACAGCGTCTCAAGATTGGAGAGCCATATGCCACGGGGTGGAAGGTT----CATGTAACCCTGTCtgtttttgcctcagccttctggaccTCCTGCAGCCTTCTGTTTTACCTACTGTCTctcatcttcctctttttccttggCATTCCGCAGCTCTCAAGTGTTTCTGGAAATTGACAACCGCCAATGTGTCCAGGACTCAGAGCAGTGCTTCAAGAATACGGATGCAGCTGCGGCTCTGCTGGCGTCTCATGCAATCCAGGGAACCCTGTCATATCCTCTTGTGTCTGTCGTCAGTGAGTAGCATTGGTGCTAAGGGGGAAGGATTGGGGAAAGACATTCCTGGGGCTCACACTTTGGTGCTAAGGCTTTTTTAGGGCTAGTGACATTAAGTAGCCCTCTAAATGAATTTAATGCTAATGTAAGAAGTTGCT--TTATATAACACCGACCCTGTCTTTCTGAACTTTCAGGTGAATCTCTGTCTCCAAAACCCACTCCGCTGCTCTATTTACTTGCTGTTGCTGTTGTCTTTATCCTGTTTATTATCCTGCTGGGAGTAATCATGGCAAAACGAAAGCGCAAGCATGGTTCCCTCTGGCTGCCTGAAGGTTTCACCCTTCGTCGAGACTCCAGCAACCATAAGCGTCGTGAACCTGTGGGACAGGATGCTGTGGGGCTGAAGTAAGTGGAATTGCCCCCAAGGCACAATTCACATAG-GAAGCAGAAGTGAATAGAAAAGCATGTCTTACTGAATCGTGGTGTTCAGTTCCAAGTCCTGGCTGTTAATCTCACCAGTCACAATTCTGAACGGCTCACAGATGACTGTGAAGCCAGAGCCTAGAAACATCTTTTCTGCTCATATATG-----TTATCGCCATGGTGGCAGCTTCTGTGCTGGGGCATACTTTCCTTGGAAGCTCttgctcagtgtgaagggaaAGGTTGAATGCTTG-------TACATACAATATTGCCCGTC-----CTTTGTGGTG--------------AGGGCCC--------------------------------------------CTAGAAGTGAGAGCGTAGCTT-------------TGGGAGTGGG-------------------------------------------------------------------------CCATGGTG--------------------------------------------------------------------------------------------------------------------GAAAAAGTGTTGAAAACCAT-TCTTGTTT------------------------ATGCTGG-----------------------------------AATCTTTACTCTTGTTTCTCCCCTATATAATTCTATCAAAGAAATCTCTCCGTGCAAGTTTCAGAGGCTAATTTAATTGGTTCTGGGACAAGTGAACACTGGGTGGATGATGAAGGACCCCAACCAAAGAAAGCCAAGGTAAGCTAGCT-----GGCCTTGGCG-GAGCTGTCTTCT-ATCACACTGTAA--ATTTCTCTTCCCTGGTTCCCTATAGTGCCCTGAATGGGAGGCAAGGGTGATAGTTTTTAATATGTTACCCATGAACAGCAAGGGATGTTAGGGCA-----TTCATGACCTTGGATTAATTATGTGTG-TCttca--aaaattctaaaaatactaaaaaaaac--aCCTCTTTCCTTAAGTGTCCTGCTCGTGTTAGTTGAGTCAGGACtggtg

a score=16258
s chr3            98141265 534 + 160039680 GAGAAGAG-AGAAACCACTTATTAAAGTCAACAAGATTAA-----------AATTTCATTTGAAGAGCAAATAGGAGTCAGCCAAACAAGGTGGAGGGGACCATCACAGGCAGGTTAGAAGAGATGGGAGGAGACCCTGCCATTCCTCAGCCTTGTCTGCAGCTCCTGGAGGGCTCAGGTTAATGAGGGGAACCTTTCTTCCCTCTCCAGGCTGAGGATGAGGCTTTGCTGTCGGAAGATGA---CCCCATCGATCGACGGCCCTGGACACAGCAGCACCTTGAAGCTGCAGACATCCGCCACACTCCATCCCTGGCACTCACTCCTCCTCAGGCAGAACAGGAGGTGGACGTGCTGGACGTGAATGTCCGAGGCCCAGGTCAGT------AGCGGTCCC--------------TGCCCTCCATGGTTCTGGCTGGTCGGTGA-GCGTTTCTCCC-CCTGGCCAGCTGC-CCCTGCCA--ATTGCAGACCTCGAGGAAGCTCGAGGGAATGAATATGTGAGAAA-CATTGTCATGCGGAAATTATGAACCTGGGACAATGACACTggtggctcat
s HiC_scaffold_1 107984133 551 - 233722169 GAGAGGAGCAGGAGCCACATCTTGAGAGCAAGGGAACGAAGGTGATTGATTAAATTCATGGTTAgaacaggaaggagagagg-aaactAGGAGGAGG-----------------TTAACGGAGGTGGCGGGAGAC--TGGCCCTCCTC---CCTGTCTGCAGCCTCTGGTGGTTTCCCCATGTACAGGGAGTATTATTTTCCCCTTGCAGGCTGAAGATGAGGCTTTGCTATCAGAAGAAGAAGACCCCATCGATCGACGCCCATGGACACAGCAGCACCTTGAAGCTGCGGACATCCGCCGGACCCCGTCATTGGCTCTCACGCCCCCTCAGGCAGAACAGGAGGTGGATGTGCTGGACGTGAATGTCCGGGGTCCAGGTCAGTATGGCCAGCCTTCCCCTTATACCACGAAGTGCTTGCCTTCATTCTGCGTGGGTGGCCCTGTATTTGGCCCATTTGGCCATATGCTCTCTGCCAGTGTCACATAGCCTAAGTCAGTTTGAGGAAATGTACGTGtaagggattacaggcat-caaAATTCACGAACACAGAAAAAAGGGAATGGCTTCACAT

a score=26403
s chr3            98142579 642 + 160039680 acaGTATCCGACAGCAGACTGTGGGGAACTACTATAATT----CCTGT-CTTACAGGCAGATTAAAATATTGTCTGTCTAGTTTGAGATGTCATAATTGCACTTAAACTCAAGCAGAAAAGTTTGT-CAGTTTGAGGAAGAGCCTCAGGGCAGAAGGCAGCTGCTTCCCTAC-ACTCTTC-ACATAGCTGGTGCTGT------------------CATGTAAAA-------CCTGTCATAGTTCTACAAGCACGGAGAGTCCACAGCCCACAGCATGATGGCGGTCAG-CAGAACTGTTCCTGTAATGGGTTAA-----------TTTGAATGTGTTT-GCAATATTCCCTCCCTACAGATGGGTGTACTCCACTGATGCTGGCTTCTCTCCGAGGAGGCAGCTCAGACCTGAGTGATGAAGACGAAGATGCTGAGGACTCTTCTGCCAACATCATCACAGACTTGGTCTACCAAGGTGCCAGCCTTCAAGCACAGACAGACCGCACTGGCGAGATGGCCCTGCACCTTGCAGCCCGCTATTCGAGAGCTGATGCTGCCAAACGCCTCCTGGATGCTGGTGCGGATGCAAATGCCCAGGACAACATGGGCCGATGTCCTCTTCACGCTGCGGTGGCAGCAGACGCCCAAGGTGTCTTTCAGGTAAAGAGCC----AAGAGTTGGTTTGAATC
s HiC_scaffold_1 107984845 666 - 233722169 ACATTATCCCAAAACAGAATTTAGAGAATTAGCTCAGTTATGTCTTGTGCGTATAGTTCTATTAATAT------TGGATACTTGAAAATGT------TGTACTTCAG-------AGAAAAGTTTATTCACCTTAGAGAAGAGCC-CAGCTCAGAAAGATTCAACTTCCCTATTGCTCTTTTATAGAAATGACATTGAGAGGAGAGGTGGGTAGCAAATGTAAAAGTAATTGCCAGTTATAAGA--AGGAGCACAAAAAATAC----CTTAAAGCATATCTTCACTCAAATAGGAAGGTTTCATAATAGGGTTGGATTCCTTCTTCTCTGAATGTTTCCCGGGATTCTCCTTTCCTGCAGATGGGTGTACTCCACTGATGTTGGCTTCTCTCCGAGGAGGCAGCTCAGATATGAGTGATGAAGATGAAGATGGAGAGGACTCTTCCGCCAACATCATCACAGACTTGGTCTACCAGGGTGCCAGCCTCCAGGCTCAGACAGACCGGACTGGTGAGATGGCCCTGCACCTTGCAGCCCGCTACTCAAGGGCTGATGCTGCCAAGCGCCTCCTGGATGCAGGTGCAGATGCCAATGCTCAGGACAACATGGGCCGCTGCCCTCTCCATGCTGCAGTTGCAGCTGATGCCCAAGGCGTCTTCCAGGTAGAGGACATGAGATGAGTTGCTTTGAACC

a score=19327
s chr3            98143750  937 + 160039680 TTACAGGCCTGTGGTGGTTCAGCTTAACTAACACACTTACCCGCTCATTGAATTCATTCAGAACTTCTGAATGAGTGTTATGCGGGACAGAAAAGGGGGGAAGGCCAGCTGACCTACTGTGAGTAGCCAGAGAAAAGGGGGAAGGCCAGCTGACCTACTGTGAGTAGCCAGAGAATGATTCAGTCAGCAACAGGG---------TTCTGAATC--TAATCAGCAATATTTTGATGTGCAGTGATGCCTCGCAGATGGC--GGTCATATGGGAGTAGTAAATGACCCAACTCCTTGGATTACTGTTAACTCTCTGGATAGCTCTGCCTG-------TCTGTGGGCCCACGGCT------------CATCCCTGACATGAGTGGGCAGTGTGTTCCTTGATACTCGT--ATTTTAACCTGAAGAGGAAATTGGAAACATTCTA-----------GCTGTATGCAT-------------------------------------------------GATTGAAGTTGTGAC-ACCTG-----------------------------------------------------TACATAC--------------------------------CTTTCCCTATA--------------------------------------------------TAGTGGTTCATTCACTTATTCAGCAAATGCCTAATGATTAGCC------ATTATAGCTCCTAGGGCATAGAATAGCCTGCCTCCCAGGGAC----------ACCTCATTTGGAGTGCTCTTATTTC-------------ATTCTTTTTCCTTATCTAAGGGACAC----TTCTCTGCTTCTCTTCTAGATTCTGATCCGCAACCGTGTAACCGATCTGGATGCCAGAATGAACGATGGTACTACCCCCCTGATCCTGGCTGCCCGCCTGGCTGTGGAAGGAATGGTGGCAGAGTTGATCAATTGCCAAGCAGATGTCAATGCAGTGGATGACCATGGTAGGGACAA---------GGATGTGGCTCC--ATCTGCAGAGAGCGTCTCTACACAAGAGACTTGCTACCCTTCTGAGAGGACTTTCTCAGATCTGAA---ACTGGACAGTCCCTTGTCCTTCCCCA-----TCATTTGCACATCCTTCAGTCTGCGGGGCTCAGAG-ACTGAGGT-GATAGGAGCCCCACATTAAGA
s HiC_scaffold_1 107985522 1185 - 233722169 TCATGGGTTTATAATGTTTTATGTGTATTCTGGCATTTAATATTTCACTGCATTCTTTGAGAGATTAGGCATGCTTGTTA----GGTCAGAAAgtagggaaggg---------------------------gaaaagaaggaaa---agctgaCTTACTAAAAGTA-TTAGATAGTGATAAAGCCAAGAGCAGGTAATACCAGTCTTTGGATTCTTAGTCAGTAATATTTTGATGTACAAAGATGTCTCCCAAATGCACAGATCAAATGGGAGCAATATCTTTACTGAAGCCCCTGCCTCATGTTAACTGTTACAATGGATCCACCTGACCTGACTCTGTGGGTTCCTAGCTACTTACTAGCCATTTTCTTGACATGAGCTGACCGTGTACTCTATGCTgcccttttattttaaatttatgatgaAATCAAAAGCGTTCTAAATTGCATTAGGctgcttacattttttttttttattttttttttgtctttttcctttttatcagtaccggggatcgaactcacgactgcctgcttccaaggcaggtgcttatgccgctgagctaaacctccagcccccaggctGCTACATTTTTAAGTTGCGATATTTTTCTCATGATGCTCTGCTTtccttataaaatagaaatacattgCTTTGTGATGCCCAGTATGTTTGGATCACTCATttgttgattcattcattcattctgtagATGCTTATTGATTTGCTCAATAGACTATTGGATGCAAAGATAAGACTTTCTTGCCCTTCAGATACTTACAGTGTACCTTTAGTGCTAgtgcttttgtttcttctctttgtttcattattttactgTGTACAGATGACTCACTATTCTGTGCTTCTCTTCTAGATTCTGATTCGCAACCGAGTGACTGATCTGGATGCCAGAATGAATGATGGCACTACACCTCTGATCCTGGCTGCCCGCCTAGCTGTGGAGGGAATGGTGGCAGAACTGATCAATTGCCAAGCAGATGTGAATGCAGTGGATGACCATGGTAGGGACAAAATGGAGAGAGATTTGAATTCTTACCTGCAAAGCACACCTACGTGAAGGAATCATTGCATGGTCCTTAAAGAGCTATTTGAGATTCAAATGCATTGGAGAgtctctctctttcattcatgtattcattcactCTTCCTTCAA-ATGTTGAGTTCAGAGAACTGAGCCAGAAGGGATCCCTAGATTTAGA

a score=193047
s chr3            98145082 6270 + 160039680 [encoded data, 6831 characters]
s HiC_scaffold_1 107986712 6398 - 233722169 [encoded data, 6831 characters]

a score=7943
s chr3            98160626 502 + 160039680 GGAAAACGGAACTGGATGCGTTAGGTAAGGGGCGCGCCTGGGGAAACCCGCCATCTAGGCCCTGAGAGTCCCGTTTTCCCAGGAAAGCCTGCCAGAGG-AGCAGTGCGCCTGGGGCTCCTGCGCTTATAGAGGAGTCCCATGGAAATCTGATGCACAAACCAGGCTGGAGTTGCTCCTGCTACTCCTGGGTCCAGGACAAACCAAGCGGGGATAAATAGA--ACAGATCATGAGGTCAGTGTGGGCCTTCCTGCCCCAGCACCGCTGGCTGTTTCTGACGATGCTC---TTTCATGAGGCTGTAGGCGAAGAAGACCTACTATTTG-------------------ACCCTGACTGGGGCTTTGACTCATATGAAA-TCACCATTCCCAAAGTAATAAGCTTTAAGAAAGGGGCGCAGGGTGTAGACAGTTCTTTGTCATACCTCTTACAGATAGAAGGCAAGGCGCGTGTTGTTCACCTGCGACCCAAGAAGTTACTGTTGCCAAGACATCTGC-CAGTTTTCTCCTTC
s HiC_scaffold_1 108003627 474 - 233722169 GGCAAAATGGACTGACTG--TTGGGCAGCGGCTGCCCCTCGAGAAAGTC-------AGGCCCTGAG--------TTCCCCAAAC-------CCAGAGGGAGCCTAGCTTGCAGCGCTCTGGCACATCCAGCGGTGGCCCATGGAACTCTGACTCATGA----GGCTGGGGCTGCTCCTAACTCTCC-------------AGCAAAGAAGGATTCCCTAGACAACAGACTACAAAG-CAGAGCAAATCCGCCTCTGCCAAGGTCACTCACT---CCTGATGCTGCTTGTGCTCCTTAAATGTCTTGGC----------TGCTACTCGggtccccccccccaccaccaccaccaatggGGCTTTGATTTGTATGAAAATTACCATCCTCAAGAAGATGAGCTTCAGGTCAGGGAAACAGGATGTGAGAAGACCCGTGTTTCGCCTGTTGCCGTTAAAAGGCAGGAAGCAGGTCTTCCACTTGTGGCCCAAGACATTTCTGTTTATGCTCCACCTGCgcatttttctccttc

a score=4364
s chr3            98162173 124 + 160039680 GGCTTTGCTGTCATAAATGTAACTTCCTTCCATCAGGATATGTGTGTAGGAAGGAAGTGAATGAGTGTGACCTCGAAGAGTACTGTGATGGGACCTCAGGTGTCTGTCCAGATGACTCTTACAA
s HiC_scaffold_1 108004156 124 - 233722169 GGATTCTCTGTCAGAACTGTCACTTTTGTCTATCTAGATGCATCTATAGTTAGGAAGAAAAGGACTATGATCTTGTGGAGTACCGCATTGGGAATTCAAGTTCCCACCCAGAGGACAcgtgtaa

a score=20002
s chr3            98162286 738 + 160039680 GACTCTTACAAGCAGGATGGAACTCCATGCAGAAACGGAGGCTTTTGTTTCCGTAAGGGATGCAGATCCAGGTACCTGCAGTGCCAGTCTATCTTTGGGCGTAAAGCCAAGGAGGCCCCTCACCAGTGTTACGAAGCAGTGAACATGTTAGGTGACCAGTCTGGGAACTGTGGCATTGTAAATGCTACCCGATATACAAGGTGTCATAGAGGCAACACAATCTGTGGCAGGCTACAGTGTATCAATGTTAAAGCCCTCTCCAAATTTCCAGATCACACCATTATACTGTCCACTTATCTGAGGGGAGATAATCTCATTTGCTGGGGCACAAGCTATCATGGAACCATGATACCCCATGGGGTACCTGACATAGGTGACATTAGTGATGGTACCTCCTGTGGTCGTAATCGGGTGTGTCTTAACAGGACTTGTGTGGACTACACCAACCTGAAGTTTGACTGTTTACCTGACAAGTGCAATAGCCGAGGTGTTTGCAACAATAGAAAGAATTGCCATTGCTCATATGGCT-GGGAACCCCCATTTTGTGTAGAGGTAGGATACGGTGGGAGCCTTGACAGTGGGCCTCCTGGACCCAGGA--TAGAAGTACTTTCAACGAC-----TAGTGCTCTGTACA-TGTTGCGTACTATCTTATTCCTCGTCTCCATGATTGTTGTGTGTTTGGGGCAGCTGATAAGAAATTTGTTTCGTAATCGCCGCCGTAATCTCCAGCAAAAAAATCCA
s HiC_scaffold_1 108004904 711 - 233722169 gacCCTTGTAATTATAATGGAACCTCTTGCAAGTATGAAGGGCATTGTTTCAGTAAGAAGTGCAGATTCTGATATGTACAGTGCCAAAGCATTTTTGGACGTCATACCAGGGAGGCTCCTAGTCAATG-TGTAATGCAGTTAACTTAATAAGTTATCAATATAATAACTGTGAGATTACAGATGTTTGTCAGTATAAAAAGTGTTCAAAGGAAAATTCAATATGTGGCCGGCCCCAGTGTATAAATGTCAGAAGCAGTCTTGATTTTCCAGCTCGCAGTATTGTAAT-TTCACACATCTGTAGGAGAAAAATCTCTGATGCT-GGGCATAGGCTATCATTTGTCCTTGAAAGCCTTGGGGATACCCAA-ATGGGTGTAATAAATGATGGCACCTCTGGTA---------------GTTTAAACAGAACTTGTGTTAACAGTTCAGTCCTGAAATTTCACTGTTTGCCTGACAAGTGAGTTAACCCACATGTTTGCAAGA--AAAAAGAACTGTAACTGTGTGCATGGTTAGGGGGGCCGAATTCTTTGAGGAAACAGAGCACTGGGGGAATATAGCTAGTGGGCCCCCAAACTGCTGAAACAGGAGGTGCCTTCATCAGTCCAGGTGATGCTCCATATATTATTGtaacttattttgttttccattgcaatgatttttgtgtttttcaggcAAGTGATACTAAACTGTTCAC---------------ATCCCAAGCTAAAAAGTCCA

a score=88950
s chr3           98189207 1923 + 160039680 AGctttctttccctttcaccttcttttttctttttttc---------------tttttgtcAGACTTTTTATTGAGTATTTTGGAGTTGTTTAACACACACTTAAATGGTCTTACTCAGGGAGGGAGG--------------TTCTTGTAGAGTCCCAAGGAAGTGTCAGAAAAGCAAAATATGGCCATTATCCATTTCCTTTTTTTCGGGGGAGGAGGGTTTCTGGGTAAATGGTACATCTCTA---AGCATTGGATCTCAGGTTTGTTCGATTGTTTTAATATATATACTGTGAACATTGAGATTTTGTTTGGAAGACACCCTGAAATCCTGAAAGTAGCACATGCAACCAACCCTCTCTAACCGCTAGCTTGTCTGCACAGGCAGGGTGATTCAGCTCTCAGTGGAGACCAGAGGCCATCTAGATGGCTGGAAGTTTGTGGAAGATCTGGGGATTGCGTGCCTCATTTACTGGGAAAAATCAGG----AAGTGGCCTTTAGGGACACTTTTACTTGGAAAATTACAACACTAGCAACAAGTCAAGGCTCACACATCT-ACCATTTGCTTGTTGAAAGCAGCTCATAATAGCAAATAAAATTAAACATGCCTTACGTTTTCCCCTCACAAGAACATAAACAGTATTAAAGGGAGC-----AGGGAATTTTAGAAAGGTAATGCAATGTTTCTTTTAAGTAGCCCTTGG-TAGTTAGTTTATGACCAGACAGTTTAAGTTTCAGTTTTTGTTTGTTTTTTTGAGTGGGGATTTTTGGTCCAAAAGTTTTGTTTGTTCCTAGTATCTGCTTCTGCCTCCCCCTCCATCAGATCGGCTTCCTCCACGGCCACTACCTTTTGGTGCTCCGTAGCTCGAACTGCTGTAGGAATCACGTGGCGGAGGGTACCTCTTTCCATAGAAGGGGGAAGCCCTCTTTCTTG-CTGCCCACGAGATCATGACCACTTGAGTAGAGATCACTTTGGCTGCTTGAGTAACTGTCTCGACTTCCACCATATCTGTCACGAAAGCTGCTGTAATCATCATAGTGACTGCTTCCACTGTAAGATGGCAGGGGCCCTCTTCTAGGTGGAGCACTACATTGAGTTACCATAACTCTCATACAAATCTCTGTAGGAACCTCCACTTGGATGATCTGAATAGTCACAATCCGGACCATATCC-ATCTCTG---------TCACTATAGCCGCTTGATGGATGGTTATCTCGTGAATTGGAATGACCATAATCGCGGTAAGTATAATCTTTTGGTGGTGGTGCATAATCTCGTGTATCTCGAGAACTTGGATATTCTCTGCTTGAATAGCTATCTTTAGTAGAATATCCATCATCTCTCGGGGACAAACAAACATTTCTTCGAGAAGGCC----TTCCCTTCGTGGCGGGCCTCAGTAACCATCTCTTTCACGTGACACAGGGGCTCTTCCTCCCATTCCACTGCTGCTACGAACTGGTCCTGAAGGTCCTGATCTTTTAGGAGGAGGACCTCCACTTCGTGGTGGTGGTCTTCATTTTACTGGAAGAGGTCCTCTCAAAGAACTCATGGTAAAATTCATGCAATAGCCACCACCATTCCTGTGTCGTCCCAGTGAGGGGGTCCTCTGGCTCCTCTACTTCCTCCTCTTCCTCCTTGAAGACCTCTGGGAGGGCCTCTGCTTCTTGGAGGTGGAGGTAGTCTATGCCTACCACTTTCAAATGATGGTTTGGTGGCTTGCTCCATTTTGATGGCTTTCCCATCTAAGGACTTTTCATTCATGTCTCTGGCAGTATCCTTTGCATCTGCTAGGCTTTCAAAAGAGACAAAAGCGAATCCTCTTATCTTATTAGTTACTCTGTCCTTCATCAAA---AGCACTTCCACTATTCGTCCATATTTGCCAAACACTGCCTCAAGGACTTTCTCATTCATTTCTGTATTTAGCCCACCAATGAA-----------GGGCGATCTGCTTCAACCAT-TTTTCCTC
s HiC_scaffold_1 60220350 1866 - 233722169 agcatcttttgtcttttttttttttttttttttttttgcatctttgtaGTTGGTTTTGGccaaactttttatttaatattctgtaaTTGTTTAACACACACTTAAGTGGTCTTTCT--GGGTGAGAGGAAAGGCAGTGCGATTTCTCAGAGATTCCCAAGGAAATGTCAAAAAGGCAAATTATGGCCAGCAC---TATCCTTTATTTTGGT---------TTACTGGGTGCATAGCACTTCCTTACATAGGATCTGATCTCAGGCTTCAT----------------TATACTGAGAACAGGGGGATTTC---------------------------AGTGGTAC-------------CCTCTAACGGCTAGCTCGGCTGAACGGGCAGA-TGGTTCCTCTCTCAGTGAAGATCAGGGTATATCTGGATGGCTAGATGTGTGTGGAAGATCTTAGAATTACTTCCCTTATTTACTGGGAAAAATTAGGTAGGAAGTGGCCTTTAGGGGTACTTTTACTTGGAAAATTACAACACTTGTA-CAA--CGAGCCTTACCCACTTCAACACTGGCTTGTTGAGAGCAattcataaaatcaaataaaattaaa-------tactttttttcctCACAAGAACATAAAAATTCTGAAGGAGAACttaacaggaaattttaaaaaggtaacacAATTTCCCTTTTA-GTAGTCCTTGGGTAGTTAT----------GATAGAGTAGTTTCCactttttatttgtgtctttgaaTGGGA--TTTTGGtgca---gttttgtttgtttctagcaTGTGCTTCTTCCTGTCCCCATAT-GGATCAGCTTCCTCCATGGCCATCCCCGCTTGGTGCTCCAGGGCTTGAACTGCTGGAGAAATCGTGGGGAGGAGGGTACCCCATTCCACAGAAGGGGGAAGCCCTCATTCTTGTCTGCCAAGCCAATCGTGGCCACCTGAGTA-AGATCGCTTCGGCTGCCTGAGTAACTGTCTCGACTTCCACCATATCCGTCCTGTGAGCAGCTGTAATCATCATCGTGACTGCCTCCACCATA-GACGACGGGGGCCCTGGTGCAGGTGGAGCCCCACAC-GGGTCACCGGAACTCTCATACGAATCT--GTAGGAGCCTCCACTCGGATGATCTGATTTGTCACAATCCCGACCATATCCCATCACTGCATCACCCATCACTGCAGCCTCCTGATGGA--GTCATCACGTGAACTGGAATAACTGAAATCCTGATAAGTATCCTCTCTTGGTAGTGGGGCCTGATCTCTTGTATCGCGAGAACTTGGGTAATGTCAGCTTTGATAGCTGTCTTTAGTCAAATATTCATCATCTTTTGGAGGCAAATAAACATT-CTAGGAGAGGGCAGGAGTTCCCTTCGAGGCAGGCCCCCATAACTATCTCTTCTCCATGATAGAGGGGCTCTTTCTCCCATTCCACTGCTGCTGAGAGCTGGTCCTGATGGGGCTGACCTTTTAGGAGGAGGACTCCTGCTTTGTGGTGGAGATCCTGTTTTCACTGGCAG-GGCCCCCTGGAAGAATTTATGTTAAAATTCATGGGATAGCCACCATCCTCCATGTGCCCTCC-AGTGAGGGAGGGCCCCTGtgcctccacttcctcctct---------aAGACCTCTGGGAGCGCCTCTGCTGCTCGGAGGTGGAGGTGGTCCTTGTCTTCCACTTTCAAATGATGGTTTGGTGGCTTGTTCCACGTTGATGGCTTTTCCATCTGAGGACTTTCCATTCTTGTCCCTAGCTGCATCCTTAGCATCTGTTGGGCTTTC-AAGGTAACAAGAGCAAATCCTCTTGATTTACTGGTTTCT-TGGTCTTCATCAAGAACAGTATTTCCACTGTCTGT-TATATTTTCCAAATACCGCTGGAAGGGCTTTCTCATTTGTTT----------CCTGCCAATAAAGAGCTTTTCCTGGGTGATCTGCTTCAGCCATCTTTTCCTC

a score=24377
s chr3            98203098 2165 + 160039680 CTTGGAACTAAGTCACTCAAGTGCATTTCTCCCTCATGGTGACTAAAACCCTAA-CTGTAACAACCTGTCAGACTCTGGGGGGCGCTGCAGTCGCACCCACCCTG----GATTCAGCTCCCTT------------ATGAGAAAGTTCTCGATT-ACCTCCAAATTATCCTCTGGCTTGGACAGTCTGTAACTCTGGTTTTCTTTCAACTAGTTTGCTAATGGAAGCTCATACCCTAAAGCAGCCATCTGGACAACCTTTGGCTACTATCT-CCTACATTCCTAGGGCTGTTTCAGATAAGAGACTCTTGGGTTGCTATGCTCATAAACACTGGACCAATTCTGAGACCATCTGTTTCCTGGCCAAGTGTTTGACCATGTGGTAAGTACATAAAGGGAGGGCACAGGCAACATGTGGGCATTTTATAAACGATGCTATCGGTGAGAGAACACAGAGGACGCAAGACTTTGTAATAACACCATAAGACGGATTAACTTTAAGCCTAACCCATTAAAAGATGACAAT-AAACCCTTATCTAAAAGCTGCTTTGAGgcttgacacggtggcatatgcctggaaccctagctaggcagaggactagggcatgagaatcacttgagcgcaggactttgagaccagtctgggcaacataatgaggccgatgagatcctttcaggtaggaacacttgctgccaaatctgacagcccgaattcagtccccca--ccacattgtggaaggaaagaagagactcctgtaagctgtctgatttttgcatgTATAAAGTTCACATACATGCACCCCCCCAacacacacacacacacacacacacacacacacacacacacacaGATGCATTCTCTCTCAGTTTCTAGCCACTAACTCTTATCAAGGCTTGGCTTTCTCCACAGACGATATTGGGTTTGGCTCTCCATAGCCTCAAAGAT--------AAAGACAGAAGGATTTATTTGCCCCC----TAGGCAAAGGTGCC---ATAATTCACCAACAAAGCACATCCTT----GTGACCCTACCGCCAAGGTCAGCTGTGCCTTGA-------------------------GCAGCCTCTCACTC---------ATTCCTTACACTATTAAGATCCTTTCAGAATCCCAGAATTGTGGCAGTGGTGGTAGCAAGAGGGTCCCCTGTATCACA--TTCACCTTCA-----TCTCTAGTTAGAACA---AATGCACGCATGCAG--AGAGGCCCTTTGGAAGCAGCGAGAACCTCCTCTTCCTtcatacaatattggtgggattatacaatc-tttgaacacttcaggaaaatacatggctgacttttataaaac-aaactactctcctttgtgtgattccttcatttcaaagcattgacccaacagaaatgagagcaattgtccac-aaataatttgtacaagaa---------tgctttatccataggaactaaatctgaaagcattcaagtgtctcttaatgggagagtgagctaataatctatgatgtacttgttcagtggGGTTAAAAAGTAGCATTGGGATCAAGAGATGGCTCAGCTCCTGATACACAGGTTACATTgggatgaagagatggctaagcagttaagaccagctattgctcttacaaaggacacgagtatgtttcctgccatgttgggcagctcagcctgtaactgcagccacaggggaatccaataccctcttTGCATGTCCAAGGGGGTGAGCACACAAAGGCTGGGTGGCTCTTAAAACCCCAAACCATTTTTGTTTGCTTTGGGTGAACCTTAAGATTGTTCCACAGTGAAATAAGCAGTACTTGCTCCTTAACGTGGTCTTTAATTGCATTGGCAGAAATCTTGGATTAAAGGCAAGAAAATGACAGTGAAAACTC----TTATATATGCTATGAATATAGGGTAGGAACTGCCATGAGATGTAAGAGACAAGACACTT----TTCAGAGTGATATGCCGCAGCTTCCTA-ATACCCGGTCcacaggcacgtatgcatttaatcaagtctcaccgagtgactatgactgatttattcgttttg------ttgtgggtgaggtcaaaaagcctagaaatactggct--cggtagagggtgggaatgctggagtatttagaaggaatgtcactgacgtctttagtgtattttgaaatacatcaagaaactaaattggattgctggatggattggcaggtggcttactg--cagactgtgataagcagaagatgaagtgttcataaagat
s HiC_scaffold_1 108014237 1929 - 233722169 CCTGGATTTGAGCTGGTGGATTGTATTTTTCCTCCA-----ACAGAAGCATGAATCTGCAGCAATCT-CCATGGAATTGTGAGCACCACATTCAGGCCCATTCTGCTTTAGTTCTGCTGTCTCTGTTACAGGATGAGGAGCAGGTACTGAATTGATCTTCGCATTCTccttgagatctgaaattctgtgaTTCTGGTTCCTTTTCTATTACTTTGGTTTTGGAAGCACATATTCTGTTGTAGCCATTTGGACAAGCTTTGTCTACAGTGTGCAGGCATTTCTAGGGCTATTTCAGATAAGAATCTCTTGGGCTGCTGTACCCACAAACATTGAGCCAGCTCTAAGACCATCTGTTTCCTGGCCAAATGTTTGCTCAC-TGGTATGTGTGTAAAGGGAGGAGACAGATAGCAAATGtatgtattataaattatgtCATTTTACAAAGTTCACAAAG---GCAAGACTTTGCAATCATGCCATAATGTATATTCATTTTAAGCCTACTTCAAAGAAAGATGCCCATAAAATTCTTATCTAAAGAGTATTTCAGGAATAGTGAATGAGGGATAC-----CAACATCATTTAGCT-----ACTGATATATCAGATAgattagagagaaaaa--tagacaaagatCTCTGCCCTGGAAAACTACTGCTAGTATCTTTCAA------------------TAACTCTGATACCT----TCTAATACCTCATTCAATGCTATGCCTTGAA-----------CTGCAGGC--TCAGATTTT---ATGCCTACTTTTTGCTTTGGAACATAACCC-----------------------------------------------TGCATTCT-----------TAACTATTAAATCTCACCATGACCTGGGGTAT------GACattattttgtttgatcatttttatctccaaCGGCTACCAAGAAGGgacaaaataatgtatttaccTGTCAAATGGGCATAGGGATCATGATGATTCACAAATAAAGTACTTCCCTGCCAGTGACC------CCAAGGACACTTGTTCTTTGATTGCTTGACTATCCTGTGTGGTCTGACAGTATCTTATTCTGATCCATGGTTACTTACACAATGAATGTCTTTTCTGAAGGCTAAGGTCATAGTCTTGGTAGTAGTGAGAGCAGGCGCCGTAGCCTAGGTTCATGCCCAGGTTTTATCTACTTGGAAAAAAGAATTCACACATTCTGTAATAAACTCCTGTGGAATAGCAAAAACTG--TCCTCTCTCCTACTTAAATGATACGACTGTATAGCAGTGTAAACACTT-GGAAAAAAGTCTGGCAGATTCTCATAAAACTAAACCACAATTTACTCTATGATCCAAAAATTTCAAGATATTTATCTAAGACAAGTCAAAATGTATGTCTACAAAATGATTTATACAAAACGTTTATAGTTACTTTATTCATAATAACAAAGATTGGAGACATTCAAGTATCCATTCACCTGAGGATGCATTACTAAATTGTGCTATATTTAT--------------AAGTGACAtagtaaaaaggaga------aaattctgatacac------------------------------------------------------acaaa----------atattttgt-------------------------------------------------------tttgcatg--------------------------------------aatcTCAAAAACA-------TTGCATTGAGTGAA----AAGAGTCATACACGATG--------AGTACATAATCtttagaatcatttttaa------------aagttctggaGCACA--CAAAATTATGATGG-AAAAACTCAGAATGTCAATTGTTTTGA--ATAGGGTAGGAATTTCT-TGAGAAGAAGGAG---AAACATTTTAGGTTGATAGTAATGTTCCATGCTTTCCTAGGTGCTTGGTTTACCTGTATTCATGCACTT-GTCAAATCTCAACTAAT-ATAATTATTTGGGTATTTATTGTGTGTAAAttttatctcagaataaaaacccTATAAATATTGAACTATAGTTGAAAATGAGAAAGCTCAAGTTTTTAAAGCAAGTGT-GCTAATGTCTGCAATTTATTTTGAGatgcat-aaaaaattaaaaaagatcaaTGGATGAATTGGGAGATGAGTGACTATTTGGACTGTGATAAAGCTAGGATAGTGAACTGGTAAAAAT

a score=16578
s chr3            98206207 1118 + 160039680 GGGAAGCTAGTTTGCAAACACACTGATCCTCATTACTTCCCCCTAATGTACTCAATAAACACAGATCAAAACCTTTCCACATGACAGGTGTTGAAGCTGAGCATGAGCAAGGAGCCTCCCTGCCTGGGATCACAGCGCCAGCATCCCTGCACCCCATAGTCAATCCTCCCTGCCACATCTC-CATGCAGGGCTTCCCTCGGCTTTGACTTTCTAGCGCTGCGGAAGTACACCTTCTAGGACAGCATCAACCTAA----CACAGCTAAGA-CAGTCGGCCGATGCATATGGCCCATCACAAAAAAAGACCACACTTCTGAAGCCTCTGATCAAGGACCACATCTGTTACAGCTGGCAAGCCGTGTCCCAGGAACCTCTTCCTTTCAACCCGGCCCTCTCCTTCCCTGTTCTAGGTTCCatcctcagcactacataaagcaggtaa--------------ggaaggaagatggagagtcaaaggccacccctt-----cttcatta-cataatgaattccaggctaacctgtgatacacgagactccatcagacaaacaaaccaaaaaGAAAAAAGAAGAAAAAATCCACTTGTGGG---TTGACCTTTTCTTAAGCAAT---GAAAAAAAAAAAAAATGAATGAAAAAAAAACCCTATAAATCCATCTCTCAAAGTAAATGGCTAGTGTTCATTTCCTATTTTTAAAAGAAAATTTATCTACTATTTATTCAAGAGATAAGACATGTTTCAAACTTCAAAATTAAGAGGCATGAGAACATTGAGGGACATAAATATCTCCCAGACTTGAAGGTAAATGATCATAATCTCTTTCTTATCTTCACTGTTTGTCCTGAAGAAGTTAGAGAGCAGAGCAAACCGGGTGCTTCGGTGGGGACTTTGGGGGAAGGG------------------CTTGCTCATAAATCAAAGGGAGACTGAGGTCCTGATGGCTTAGAGTTTAC-CCAGGCCTTCATTTAGCCAT-TCTGTTATTCCAAGCATAACCTCTGCATGAAAACTGGCTTCATGTTTCACCCTAGCAGGACTTGACTAGACCCTAGGGAGT-CAAGCTCTTCCACTCTGTCCCCAGCTTCTGTGGGTGC-AGGAAGAAACCTGATGCTTCTGAAAGCATCTACTTCTAAAAACATAATGTTTA
s HiC_scaffold_1 108016849 1035 - 233722169 GAAAAGCTAGTTCAGAAACCCCCTGATCCTCAACACCTTCCCCTAGCATATTTAATAAGCATATATTGCACTTTTTCTGCATATCAGACACTGCTGTTA------------------------CCAAGCTCACATTATCAGGTGTTCTGCGTCCAAAGGTTGATCCCTCTTGCCACGTCTCATATG-------------GGCTTTCACTATCTG--GCTGTGG------ATCATTCAGGATAGCTTGCCAATAATTCCCAGGGCTAATATTAGTGAAACAACAGATGGGTACCCTGTTATCAGAAGTTCACACCCCTGCAGTCTCAAATGGGAGACGACGACACTCATTGCTCTCA--CTGGACATCAGGTACC--------ACAAACCTGCCT-------------------TTCCATATACAGGACTGCATG----AGGTGAAATGTTCCACCACTGCAGAGTACAT---GAACCAAGCATTGCCCTTTCCATCCCTTATTATCAGAACAAGTTCC------------------CCATTCTACTTCAGCC--ACGAAACACAAAG------------TAAACTCATTTattaacttttgaaaatttttcaagaCGTTTGAAAAAATAGAGAACATGA---------------TATAAAATCATTCTTCAAATAAAACTCTGAATATTCACTTtcta-tttgaaaaggaaatgtacCTAT--TTTATGCAA-AGATAAGACATCTGTTGGCATTCAAAAATTAAAGAGATGAGAACATTCAAGGAT-TGAATAACTTTTAAGATTCAAAGTGAATAACAAcaatttctttcctgtgtttcttgtttttcttgaagAGGTTAGAAAGCATAACAAACTGAGTGTTTTTCTGGATATTTTAGAGGAAGCATAAAGAGGAAGTGGACTTTTTATTCATAAATTGAAGGAAGTTGGAGATGTTTGAGGCTTGAAGTTTGCACTGGGCCTTGGTTTAGCCACATCTTTGCTTTCAAGGATAATCTTTATGTTAAACTGTACAAAATGCTCTCCCC---AAAGTTTGGGCTAGACTCTCGGAAGTGTGTGATATTCTACTTCATTCTCAAC-TATGCAAGTCCTGGGAATGACTCAGGTACTTCAGACAGTGTCCACCTCTAAAAATCTGATATTTA

a score=28179
s chr3            98210617 3839 + 160039680 [encoded data, 4572 characters]
s HiC_scaffold_1 108022659 4260 - 233722169 [encoded data, 4572 characters]

a score=15848
s chr3            98224221 1921 + 160039680 agctggtgaca-tgagctaatgactcccagtccctctaaacccaatgctttcttatctgt-aACTGTA---TTGGAGCCATCTGTTTACCTTCAA---CattaaaaaaaaaaaaaaaaaatCCCAGTGTTGGAATCCCTTTCTTTCATTTACTGGACTTGAGGAGGCCTAGTATCCCCTG-----TGAGAAAACGTGCCCAGGTCGCCCTCTGCTGACTGTCCTGGAGACAACTCGGGAACT--CTGGGT---AGTTCAGGAA------------------CTGCTCAACACTTCTGCCC-CTGTCCTTAGGACTCTGGCATTGGTCCAGAGGGCTTGCAGGGAAAAATAAAATTCCACAA------TGTCTGCAATCCCTACATTAAACTTGAGATTATCTTCATTGTAAAATGCTAATCTA-CCTGACAGTATTTT---------------GACGTGGTAGCTAAATCCCAGCATCTTTCTCACTGCT----------CCAGATTGCAGGTCTAGGAGAATCCAGAAa----aaagagaagaaaagaaaagaaaaaaaCTGGAACGGGCTCTGAGGGCCTTGAAATCAAAGCAT-TGAAGTATCATCTCCATCGAAAGAGGAAGATGGCTTCCAAAGGCGTGCGGCTACTCTTACTGCTGAGCTGGGTAGCTGGCCCCGAAGTCCTGAGCGGTAAGTTCAGTCAGTTATTGGAA--GGCAGCCACAGGTAGTAAGTACACAGTGCACATAGTAT-------GCCATCCACTCACCTG-----------------------------------------------------------CCCAGGCATTCCAGGAA--AGCATATCAAGATGAGAATG-----CAAAATCAGGTGGC--------------------CGTCAGAGAAGAGCCAGTCTGAGACGGTTGGAAGCCACCCTTA---AGTCAA--------GGGTTGCAGAATAAAGATTTTGAGTTTGTTGTGAGCGATAGAGAGCCTGTTTCAAGAAGCCAACAGGCCTCAGGCTGTCTGTAGCTCATAGCTATAATCACAATGTCCAACCATTTATGCACTGTTCTCGTGTTTGAGCATATTACAAAGTCCTGTTTACCA---GGGACCTGCAAAGCTAGTTAGAGAGATGACTATTGTACACTCATAGCACAAGGACAGGGAGCGTGCCAGGGACACTGTGGAATCTGCAGCAGAGAAAGGAGGATGAAGAAGGTTTGAGTGTGTTGAGGAGAACCACCACGGACTATCCGGGATGGAAAGAGATGCAATGTGGGGTCCTCTGATATAAATGCTCCGTTGAATCTGAGAATGACAAAAGTCACACTGATGCCCAGCTCCTAGCTTGGTCATCTCCCACAGTACCCCACAACCTCACTGGGAGTTGGAGGAGGCAGGACCTCTGAGAAACAAGAGTTGCTTGTTTGAGCATTAGTTCTGTCGAGGGAAGAGGCCACTAAAAAGATCTGCTGAGGCCTAGAAGTT--CTC-------------GAATGGACTTTGCCAAGGGGATGAATGAATGCAAGGAAGTGTGGGGAGAGGTGGAGCTTTTGGGGCATCGGT--------------TGAAGGCTGTG-TTTTTGCCGTGGCCTACCCTCCACGTGGCCTTG-----TATGATACTCTGCCCCTGACTCCACACTTGTCT-CAGCTACC--AGCTCTCT------GTGTCTGATTTCTCAGGACCCAGGGAATTCAGCCACTGCCCCTGCACCCTGCAAGAATGCAGAGAACACTGGAAACTGTCCCCAGTCCCTGCTGCCTTACAGCCGTGTCTGTA-----------------------TGCTCCTTGGGGGCTGCCCTGACCTCTGGCTTCCTT-TAAGAGCTTGACACTGACCCTGGCTATCTTCTGGAGAATGAGATAAGACTTCCCAACCTCTTCCCAGGACTTCACTAATCTCCTTGGGTCTCTCCCCAGGAGGAGACTAGAGCCAAAACATATAGCACGGGTCCTTCCATGGCTCTTTTCCAGACAGATCTTCCTCCCAG--CTGTAGAAAACCTTTTTGTTTATTGCTGCATTCATGAGAACTGTGCT-TAGGACAGATCCCATATATATATATTTGCACAAAAGCTTGTGGAAAAA
s HiC_scaffold_1 108033851 1889 - 233722169 AGCTGGTGACAGCGAGAAAACAAGTTCACCCCCATTCAAATCAG----TTTCTAATCTGTGAAATGTGAGCCTTAGGCTATGTATTCACTCtgaatgacattaaaaaa-------------ttcaATGTTAAAGCCTCTTGATTTGACTTTCTTCACTTCAGAAAGTCCATCACAACCTGATCCAGGAGGAAGCTAAGCCTGGTGAC--TTCACTGGGTCTCCTGAAAACACC---AGAGCTGGCTGGCTTCTAGTTTAGAAATGTATGTGTCCATTCAGACTATTAAACTGTTGAGTGTGCTGTAGTAACCTCTCTGGTGCTGGTCCAGTGGATTTTCAGGTGAGAATAAAACTGtgtaaattaaattttgttaatatttacattaaacTTAATATTCTCTTCGCTGTAAGATCTGGATATAgccagaaaacatttttttttctccctgtgtAATTTTGTGTCTAAATTTCTGGGTCCTTCTCAGTAATGTAGATATATTCAGATTACAGGTCCAGGAGAAACCAGAAgtttcaaagacaaaattaacAAGGA------------------CTCAGCTCCTTGGAGCCAAGGCGTCTGCAGCG-CAGCTTCAGGAGAGCAGGAAGATGGCATCCAAAGGCTGGTGCTTTTTCCTCCTGCTGAGTTGGGTAGCCAGACCTAAAGCCCACGGTGGTGAGTAT-GTCACCTAGTGGAGATGGAAGCCATGATCAGTGATTGCAAAATCTATGTGACTTTGACTCAGCCAACCCCTCaccaaaaatccaaaacaaaacaaagcaaaaaacaaccaaacaatcatatcaacaacaaaaatccacTATGCACTGCAGGAAATAGGGACtgaagatgggaatgaaagacAGCATAATGTGGTAAAGAGTTCAAAGGTTGTAGAATCAAACAAAAGCCAATGGCACAGAATTGTAAGCCATGCTTACATAatcaataatatataaattatataattaattttgaaagtttactG---------------CAGTTTAAGCTACTCAACAGTTAGCCAACTGTCAATTAATGATAGATATAACCAAAACATCCAAATATTCAGGCACTATTTTCCTATTTGGGCATGTCAAGAATTCCAGTTTTTCAATTGCGGCCTAC--------TTGGAGAAATGGTCCT-------------------GACAG---ATGTACCA---ACACTATCAAGTATAGAGCAG-----------------------------------------CATC-----CTATCAAAGCGGAAAAG-------ATATAGAATCTCCTGTTGGAAA------------------------------------------CAGc--------------------------------------------agcagaagaaaacaaagcatgcTGAAAACAAATATC-CTTGCTTGAGCATTGCTCCTGCTGAGCACAGAGGCTCCT-AAGTGATTCAGTGCTGCTTGTAAATTAGCTCTTCTCCCACTGGGAAGTGTGCTTGGCTGAGAGGATGATCCAACAGAAAGACATTCAAGGACAAACAG-GTTCTTTGGGCATCAAGTCGATCCCCACATATGAAGACTGTGATCCTTGCAGTAGTGTTCCCTTAGCATATCCTTGTCCTTTGTGCATCTCTGCCCTCAACCTCACACCTACGTGCAACTTACATAGGTCCCTCACACCATGTATGGCTGTTAAGGCTCT--GGAAACCTGCTGCTGTTGCTGAAAGATGCAAGACT-TGCAAGACTCTGAGAGGCTTCCCAAACCCCTCCT---TTAGAACTGCATCCTGAGGCCAGGTGGCCAATGGGTCTCCTGCCCCTGTGGTTCTGAGATGACCTCAGACTTCCTTACAGGGGCTC--CACTAATACAA---------TAGGGAAT--GACAAGCCTCTC---TCCCACTCTGAGATTTCACCAACCTCT---------------------------GGCCAGCACATGCAACATGAA-CTTTGCATTGCCTCTTTTCAGACAGTTCTTCTTCTCAGCACTGGAGAAagacattttgtttattctcata-TCTTGGGAGATCCCCTATATAACACAACCTACATAT---TCTTTGTGCTGAAGCTTatgaaaaaa

a score=51731
s chr3            98228397 4871 + 160039680 [encoded data, 5441 characters]
s HiC_scaffold_1 108038560 4648 - 233722169 [encoded data, 5441 characters]

a score=29216
s chr3            98235908 1802 + 160039680 gctggagattactgcaagagctgatgtggaaagattgagtcaaaagcca--tcagagacagcatt-ttctggctcaggagac------cctttctcttaaggccttcaacattattagacgagacccacccacataacgtagagtggtctcctttactcaatgtctgttgatttgaatgt-aacaatatctacaaaatacctgcagagcaacatcgagacatgtaggcagctagcaattgctggacacctgga----ctaaacaa-----tatcatatcctacccatgttgacacatgaaataaccaccaTTGGCTGTTGTCCAGGACTCAGAAAACCGCACACAGATAATTCTGGTAAACTCAGTAGTGAACTAGCTTGTTTTAAATGTCTGTTTATTTTCTTACAGAATTCTTAACTTGGAACAAAAATGGATGTGCCAACCGCCAACACTTCCTGTGCAAGTATAAGACATAGAGCAAAAATCAAGCGTCTACCAGCCTTGCACAAACTCTTCCCACTTCCCTCTCACCTGGTGGCTGATCTAATCATTATCCCAGAGTAAACACTGTAGCAAACATTGAGGAGGCCTCCAGGGCACTGGCTATCAAGCCCTGCTTAGCATGGTGGGACAGTGGCTTCCGGTCTCAGAGTTTAGCATGGTGGGACGGTGACTTCCGGTCTCAGAGATTAGCA-TGGTGGGACAAGGGCTTCTGGTCTCCGTGTTCACTCTACAATCCTTTCTGGTACTCCCCTTCCCTCTCAT--------TGTCTTAAACAGCAATGCTTAACAAGCTAGAAATGTGCTTTCTTGACTA-------CTGCGTCTCTGTCAAACCAGTAAAGTTTTGGAGCCAAGAAACAGCAATGAGTGAGCGAGTTTCTGTCCTCTTTAGCCTCCGTAACCTCTGACCTCCCTCTGTCGTCCACACATGTCCCCTTA-CTTCTTG-CTGTTGCTCCGTTTGCCAT-GGAATGTTCATCAGTC-AGTCCCTGCCTGTCT---------------------------------------------------GGAATGG-------------------------------------ATCTCTGCCTCCTGTGTCCCTGGCAACA--CTGGGTTTGAGCAGGAGAGATAA------------------------TGGTCTGCGAGGTTGAGTGAATGGATGA-----CATTTAATTACGAGTTCTTCTGGACCTATGGTGGGAGTTGACAGTCACAAGTGGTACAGCGGACTGACCTGGAGACCCTGGGGCTTGCCTCTCCTCTGCCGTTAACAAGCTCCGTGGCCTGGCTCAGTTCTCTGTGCTCAGAGTTTGGGATTCCTTACAGCATGCTTGCTATAATATTAAGGAGGTAATCAAACCATAAAACATACCCACCCCCACCCCCCAGGTCAGGAGCCTGCATGGCA---ATAGAAGTCA--CTAAGACTTGCTGGCTGTTAAGAAGGTGTG-----ATCATGGCCATGCCCATCAGAAGGGAAAG-TGCCTAAGAAGAAAGTCTTTGTGGCCTGGCCATGC--AGTCAAATTAGGTGGATGGTCACTTGCTTTATC-CTCGTGACGTGGTCAAGCAG----TGAAAACAGTTGGCTCGCCCTGGCCTGAGGGTGCTCCTTCATACCCTGGGCCATCTGAG---GGCTGGCTGAAGGGAACTGG-----AGAAAAGCTTAGTGAGGAAAGGGTCAT--AGGGGAGCCCTTCCTTTTGC------------TCTCAACAATAATGTATTGC-TCTACTGAGGCCCGTCAACCACTAAATAAA---CTGCAATGGTGAGATTTCCGAGGAGGTGAC-----------AGGCAGATACAGAAG-GTCA----------------------TTTCCACTGAAATGCTAACCACCCACTCCAAAAAGAGATCTGGACAGCTCACTGCCCGGGAAATAA-----------------------AAGCATGGTAGTTAAATTAAGAGCACC-GGCTGACAGGGGTCACATGGAACCC
s HiC_scaffold_1 108046886 1927 - 233722169 GCTGGACATTACTAGAAGAGTTGATTTTGCAGTCTTGAGTCCAAAGGCAGACTAGGGGCAGAATCCTTTTTGCTGTAGGGACTTCAGACTTTTCTCTTAAGGCCTCCAAC-TCATTAGACAAGGTCCATACATATTATAGAAGGTAATCCATTTTATTCAGAGTGTGCTGATGCAAATGTCAACCGTATCTAAAAAATACCTTCACAGTGGGATCTAGAGTTCTAGATAACTAGCAACTGCTAGACATCTATGATACCCAAACAACTGGGTATTGTA-ACTAGCCAGACTGACACACAACGTAACTATCACTTTATCTTACCCATGACCCCAAGCAAAATAATCAGATAACTCTGGTAAGCTCAGTACTGAACT-GAATGATTTCaatatctgtttattttcttacagagTTTTTAGCTTGGAACAAAAATGACTGCAATAAACTCCAGCACTTCCTGTGCAAATATCAACCATAGAGCAAGAATCAAGATTCTGCTAATCCTTGGGCCACTTTTCCAG--------------------------------------AAAGTAAATGCAGCAGAAAGGAATGATGAGGCTTCTGTTTTACTGACT---------------------------------------TCTATAGGTTTAG------AGAA-----------AATCTC-----TCAGCATTGGTATGCTAGTGACTTGTGAT----GTTTTCACCTCACAATTATTTCTACCACATACTTTCCTCCACCTATCCCTGCTGTCTCAAGAAG-------------ACTAGAAGTGCATGCCACTGACGAAAAACAGCTGTGTTTTAGCCATAGGCGTAAAGGTGTGAAGGCAGGAAGTAGAAACGCAAGAATGAGTTTCTACTCCTGTCCACTTCTGCACCTTCTGCCTTCTCTCCATTGCTCGCATCCTCCCCCTCAGCTATTTGTCAGCACCTCCTTTGGCCATGGGAATATTCACCAATAGAGTCCCTATTAGACTTATAATAAATAATCATATCCTCTGGAGGTTGCATTGTTTCAATTCAGAAGCAGAAAGGCAAACCAAGACTCAAAAATAACACTCATCTTTCTCCcatttctgcttcctgtctcccTGGACGCAGCCTTTGTTTgaacagaggagagaggagagaggagagtgaCATACTTCCCAGACTCGGAGAATAGTTCAATGAGTGAGGTATTATATAATTGTTAGTATTGCTCCACTTGGGAAAGGAGATGACTATCACAGCTGGTGTAGTAT-CTGACATGG-GGTCCAGAGAATCATTTCTTA-CTGCCATTAAAAACCTGTATGTCCTTGCTGGGTTCTCTTGGCTTGAGATTTGAGACTCCTTATTGTGTGGCTGCTCCAATAATTGGAGGGTTCCTGTGCCTTCAAACAAATTTGTGT---TCCCTCAGGTCATGAA-ATGcatgacagagaaagaagaaaagtaaggACTTGATGATTAT--AGAAAGCATTGCTTCAGCCTGACcacatttcatagaaaaaaaagcTACGTGAGAGGAGAGGCCAGGTGGCT--GCTGGGCTGAGTTGTGCTGAGTGAATGGCCATTTGGTTCATCACCCATTGTGTGACCAACCAGTCTTTAAACACAGTCTTC-CTCCCTAATCTGAGAAG--TCTTTTGCCATCTCAGCAGTCTAAGAAAGATTGGCTGTTCAGTTCTGGCTAAAAGAAGGGTTCAGTAAAGAAAGGGAAATGCAGAACAGCTCTTTTGGTGGTCAaagaggaaaatgtaaaaaataatgtaCTGCATCTCCCCAAGATtatcaaaaaaaagataaatatcttCAA-GATGAGATTTCAGATGTAGTGAAAATGAGTGATGAGGCCTATGAAAATGAGTCATTGTTTTGAAGCCTATAGCCAGTTTCCACAGAATAGC-AACCACCAGCTCCTAAGAGGATTCTGAGAAAGTCTGTGTTGGGGGAACAAATGACAGTATCAGATTCCTGGATAGGAATGATAGGTAAACTGAGGCTACCAGATTGACAGGAGCCACAGGGAACCC

a score=15667
s chr3            98242323 765 + 160039680 cccagAACTCTCTCTT---CTGTTGACGATTTCTGATGAGATG----ACTCCCTTTCCCAGGAGCCTTTCCTA-TGCCACTAGCCTTTTGCTCTTAGCTTCTAGAGCACACAGCCTCTGCCCAACTCTCATTGACATTTTAACCATTTGTTAATTCAATG-TGTGCTTGTCTTCCAGACTTCAATTCTTT----ATACAATGAGACC----------CTTGAACT--AACGCGT-CAAGGTCAAGTTCAATGTGGCTAAGTGCAGTGATTCGATGC-AGGGCAATAAGGACTTTAGCA------TTCAAATTCA-TTTCTTTCAACTAAGTATAAGCCAGACAAAGTAGGTCTGCTGACCTTTGTCCATGGGG--------------------------ACTAGCTGATAACCCTAGAATGAACAACTC--------------ACTCTTTTGTTC----AACTTGTATTTGGATCATGTAGTTCCCTAAGTCGGGGTCAG-CCTCTGAGGTCACTGGGACGGCTACAACAAAATAACAGTGAAAATAAAAATAGAAGGATGTACACAGTAGTGACGGGTCGT-GTGTCCTGCTGGAGGGCAG----ACCAGGCTGT-TTGCAGTCAGGGGACAGACAAATACAGGTGTGTAAACAGGCCTCAATAG-TAGAGTTTATGACTAAGATCAATATCCTGTCCTGCAGCCTGTGGGCCCCATGAAGACAGCTGGAAACGTAGACTTAGGGACAAAGTTTAGACAAAAAGGAATCTGCAG--CAGAAGTTT-AATTTGTAAGTG--GATTAGAAT-TAGAGCCTCTTTTGGTTCTGGAATACGTCATTAGAGAATAGCAAAT
s HiC_scaffold_1 108052340 835 - 233722169 CCTAGAACTCTTTCATGAGCCATTGAAGGATTTGGATGAAGTGTGCCACTGCCT---CTAGGTCCCTATTCTGCTTCTGTTAGCCT----CTTTTAGCAGCCACAGCACATTGCCTTTCTCTAAGTTTCAttgctgttttaaatattt-tgatctcAAGGATATGTCTGTCTTTCAAGCATCAGTTTCCTTGGTATAAATTGAGAATAAATTGAGGACCTAAACTCCAGTGCTTACAGAGTTTAGTT-AATGTGAATAAGAAAAGTGGTCTGATATTAAGGCAATTAGAACAGGAGAACAGGAATTCAAATTAACTTTTTTTCAATTGAATGTAATCCAAACAAAGCTGGTTGGTTGACCTTTGTCCGTGGAGTGATATAGTGCCAGAGTCCTCCCTCTGCAAGTTGATAACCCCAGAGTGAACAGTGCCTTCATGCTCCAATATTCTCTTGTTCTCTTAGCATGTAGATGGATCATATAGTTTACTAAATTAGGGATAGATCTCTAACATCACTAGGGAGTTT--TACAAAGTAACAGTGAACATAAAATAA--------TGCACATTAATGGTGGGTTGTCATACGTTAGTCGAGGACAGTCATTCCAAACTTTATTGTAACCAAAACACAGGC-AGTCTAGACATATGAGCAGGTTACGAAAGTTAAAATTTATGACTGTAAAGGAAGGCCCTTCCTGTAGCACCAGAACCCCATAAAAGCAACAG--AATGGAAATTTAGGGGAAAGGTTCAGGCCAAAAGAAATTTGCAGATAGGAAGCCCAAATTTGGGAGTACTACTTTGAATATAAGTCTTATTGAGGTTATAGATTACAGCAACATGCCATAGTAAAT

a score=41958
s chr3            98259145 3616 + 160039680 [encoded data, 4140 characters]
s HiC_scaffold_1 108068417 3900 - 233722169 [encoded data, 4140 characters]

a score=27727
s chr3            98265967 2226 + 160039680 cctgttaGCCTTTCTTTCAAAGCTCCCCAATCAAAT--TCCTGATAATTA-----TTTTGATTGTATTCATGTTGTAATGTTCCTCAGATAGTGGAGTT----ATACCAACGCTATGTC-----TGCGTGCTTAGGATTTCTT---------TTCAGTGAAAGCTCT------TTCTTACTCGCACATAGTG--------TGGCCATTGTAAA-------TTCTTGCTTGCAC---------CGTCTGCCTCACACA-TGCTCGGCACTCTg-ctattttaatgggtgagtttggttttccaggggt-actggctgctctgtctggtgctctgtgt-----gggaagcactaatggccagcttggtcagtgcctttcaaggcatgtttaaggtgaagagtcaaggctgagcacaccatggagagccacagaccctgtacaagcccatctgccattcctgcctgctgacttt---aggagccacctctgactggggggttcccacaatgctcctgggaaacag------cactaggagaaaatactgttaggcca---gccttagggagtagaaatgggggtctctgagagggactgtcaggctatggttggtctgtctggaattcttctcaccagctGAGTTTTG----ACAGTTTTGACAAGATTATTCTT------------------GTTTCCCCCAGCTGATGTCCCTCTAACAT-CCAGCCCCATCTGCACTAATGTGCCCAGCCCTCCCCA-TACCCTTCAGACCCCTCAAGGACTTCTGTTGGATTTCTCAAGTACACACTGTTAACattcatgctttctccttttctctagtatgttctaggttgatgtgagaggaagcagccaacagcctatggcagttTTCTGTATAGCTATGCAGAAAAGTTTTGACATGATCAAATACAGTGCAATTATAAGTTATTATAACAAACAGGACAAATATTGTGATCATTATCTATCAATAGAATTCCAAGAATGCAGAGAGA-----AGCAAGAAAGCAATCAAA--GCTAGATGAATGTG-------------TTGTGACATTTTGCTTGCTAATAACATAAAGTGACTGCGAGAATGGATTTTTTTCCCCTTTTCAACCCATTTAAAGGTTTGCAAAGATGGAGGCTC-AACAATAGAAGCCAGAGAAAGGATAATATAAAGCA-GCCGGTTTGTTTCACGAGAATCCTGGGCAACTGTGTCACTTCTATTCAGGTATCCCTCCCATACAAATATTGAGCCCTTCCCACGTGTGACTCCTCAGCACATTGTACCTTCTGTCCTCTAGAGGATGCAGACCACAGGTGAGGGGAG-------------------------------GCA--CCCAA--------------------AAGTGGAAACACACTT--CCTT-------------CGAAAACTCCA-----------------------AGAGCGGATTGTTTTTCTTC-------------------------TGTTTGCTTTCTCAGA--------------------------------------------------------CTCCCTGCCCTTTCCCCTACTTTCCTTGGGAACTCTGACCTACTTAGATAGAAATCTAAACACACTCCCCA----------CACTCCTC--TCACCAAGCTCCAGAGGCTGGGGAATCAAAGGTCTGCCTTTCATTCCTGGCAACCACAAAAGACAAGGTCTGGCACACACACAAGAGATAGGAGGAAACAACAGAGTCAGAAGCACTGCCTGCCCG--CCTCCCACAGCAGAAG--CCGTGCCAGAGAAACAAAAGCCTTCACAAGCCCTAGCCTTTGAGGTGTGGTTTTACCCACTCCCAGCCACAGCCCCTCA----TCACACGCCTACGAGCTAGGCCACTTCATCTGTCG-AGTCCCAATGTCAGATCTCCCACGAGGGGCTGAGTCCAAATCAGCATC-TGGACTGTTTGTAGGATGGCTGGCATCT--------GAATTGACAGCGCA-CGAACATGTCTG---------------AGTATAA----------AGACCCCCCCCCC--CTAAGACTTACCATAGAAATACCGTGCTACCTCCAACCCCTTTTCTTGGTTCCTATAATTCT-GAAAGCCTTTCCCTTTGGTCCTGTGGGAAGGTACCACCTGCATTGTAGGACATGGCTTTGAATCACTAGTCCCGGCCTTGCTGAGTAAGTGTGTTTCATGGTCTGAGTTGGAAGGATTATGACTGCCTGCTGAAG-GAGAAACGCTGGCCTTGTGTGAGCTAAAAGGGGCTCTTCTAGAAACCCGAGATTCTTACTTATAACCTTGCT-CCTGAACCAACCCCAGTGGCAGGATTGCCTAAAACACAAACACTGTTTGTGCAAGACTTC---------GTCT----------------TTGCTAATCAATTTCTCTTTTAA---TGTTGGTCTAACATGTAACA---GATTTCCTTCATGGGTCTTATACCCTCCCTGCGCACTCTGTA-----GAATGGGAGGATCCA--AATCCCAAAG-AAAAGTGAAAATGTCTG-----------GTCTTCTTTA
s HiC_scaffold_1 108073553 2504 - 233722169 cttattGTCTTTGATTTGAGAGTTCCCCAATCAAATATTCCTACTCACTAACAACTTTTAGCTCTGCTCATCCTCTAGTATTCCTCAGTTAGTATATTCTTTAATATCATAATTACTTACATAATGCTTAGTTAAGATTTTTTGATGCCTAATAGCGTGAGAGCTTTCCTGTCTTCTTAAATGAATATTCTAAATTCTTTTGTCCGTTTCAAAAATTCTGTTTGTGTTTGCACACATTTCACTGTTTTCCTTTTCCAGTCCTCAAGAATGTGATTATTCTGGTGTGTGAGTTTGCATTTATGAGGGTCGCCGGCTGCCCTCTTTGGTGCTATGTGCTATAGGGTAGGCACTGCAGGCCTGCCCGGTCTGTGTTCCT----GCATTC---------AGAGACAGGTCTATACCCACATGGGAGAGCACCAGGCACTCAGAACCACTGTTCTCCATGCTTGGTTGCTGCCTTTGCCAGGTGCCACC-CTAACTATAGTTTCATATCAAAGCCCCTAGAGAACAAACAACATACTAGGAAAAAACAGTATTGGGCCACCAGTCTGAGGATGTGGAAATGAAGGTTTATTCGA----CTGTCAGAGTAGGATTGGTCAATCTGCAACTCTTTTCATCCACTGGGTGCCACAGCATGACTGTAACAACACTTTTCTTTCcactgcccccaccccagcctcctccACCTCAGGGTTCCAAAGCCTGCCAACCCCA---GCCCTGCTACACACATCCAACATAAGCATCTGTCACTCTCTTCAAGAAGTtgcataga--ttttaaaatatttgttcttcaGATTCATACTACCATCCTTTCCCTACTGCTTTCCAGGTCATTTCGGGAG--------------CCTCCTACAGTTTGCCACACTGTCA------GAAGTTTTGACATAATCAAAGAGCACACAAT-ATAAATTATGGTGATAACTAGG-CAAATACTGC-ATAATTATCTATCAATA-AATTCAAAGAGctcaaaaagagaagaagaaggaaagaaaaagaacggATAATTACTTGTGCAAACCGGTATTTTTGTGACACATTATTTGTTATTGATATAAAATGTCTGTGAGACTAGAATTGTTT------TTCAAACTGTTTAAAGGTCTGTGAAGATGAATTCTTTGACAATAGATGCCTGAGAAAGGATGCCACGAAACACTTCTCTTGGTTTAGTCGAAATCAGGGGCAACTATACTATCTCTAATCAT-TAGATCTTCCAGA-AAATATTG---TCTTTCTGGTTGACACGCCACATTGTCTTGCTGGGTCTGCTTCCTAGAGGATGGATGAGATGTGTCAGGGCAGTTCTTTGTGTAACTTCTGCCTTCAGGGCTTGGCAGGCCCAATCATAATATTATTTCCATTTGATTGagagctcctttttcctttttttctttaatgcaaAATTTCTGTACACACAAATTGTATACTTGGTGGATCAGATCGTATCTAGTTCATGATTAGCTcactaataaaaacatatttgacaTCATAAAGAAAAAAGGCAGGGCAAACCTGTCACATCACAGCACCACAgctcattgttttgcttctccATGTCCTTTCCCCTACTTTCTTCAGGAACTCTGACCTG---AGACAGAGATCCAACCACACTACCCATAGGTTTATACATTCCTTGTTCACCAAACTCCAGAGGATTTAAAACCAGAGATCTGCATTTCATCTCAGGCAATCACCAAAGGCAAGgcctag------aaaaaaagagagacagcagAGACACGGTCACAAATACTGTTGGTCTTTCCCTTTCACAGCTGCATTCCCATGTAGGTGAGATGAAAG--------AGCCCTAGATTTGGAGCTTCAGGTTTGTCCATCCCTAGTCACTGTTGTTTGCTATTCATATATCGATCAGCCATGTCACTTAATCTCTTACAGCCTCA-------ATCTCTCACAGCTTTCAAAATTC-AGTCAACTTCATAGAACTGTTGAAGTACAGCT--CATGTAACTTTAGAAACTGGTAGAGCATTGGATGTGGTTGTACTTCATTTGTGCTATTATGAAATAAACAGTAGACTTTTCTGCAAGTCTAGTCTtgccataaaa---------ttttttttactcaCTTTC-TGATATCTAGACTGCTGGAAAGTTTCTCCTTCAGGT--TGTGGAAAGTACCAATCTGTGAGTGAGGATATTGTTTCTATTTCTCAGTC------------ATTCAGAGCGTTT----------GTGGAACGGATGACAGTGGCTCTCTGAGGAGAAGAACACAGACTTTGGGTGGGTT-AAAGGAGCCGGTCTAGAAGGTTGGGGACTTTGTTCATAATTTTTCTGTCCTAAACAACCTCTCTTCAAAAAttgcttaaaaaagaaacattatttttgcAACAGCTCACACTAGATGTCTAAACTTTTAAAACCTCCTAATAATCTATTTGACTTATCAGTTTATTTATCTAACACCTACCACACGCTTTTATTAATCTGT------CCTTTCATGtatattctgtattttgaaattgAATGATTCCATAatctcaaagcaaaaataaaaatgtctgttttaatttgtgtcttctcta

a score=30604
s chr3            98279682 2001 + 160039680 CTTGTAATAAACTTCTCCTTCCTAGGAAAGCCTGAACTTCAAG--ACAGTCTCCTTTTGAGGGATTCTGAACCTCTCTAGCAGCATCTGCTGCGTCCCTCTTGGAAGCTCTGTGAAGCTCTGTGTAAGCATAATGACGGACAATAAAGATAAGAGGAAAACA--ACCAGCTCCACAGACCAAAGCCAGCCAGCCCGTCAGATGTGCGTCAACACCTACTCTCAACTGCTTGAAGAGCTGGTATTAAAAGGTT-----------------------ataccagtaatcacagtgctcatggaggctgagggaggaagactgat---ttcaa------------------------gttcaaggctagcctgggGTATTTAAGAAGA---------AATGGAGGTGGAGGGGGGATTA------CTCTTTGGTTTTGAAA--GCTGCTTCTTATAG--------AAATGGTAAGAATAACATCTGACTGCATAAAGTGGTTAGGGGTTAGGAACAGATGGTGAGCCACTCAGCAGAGGAATCAGGAGGCTGCAGAGACGAGTTGGGT-GACTGCTG--ATTGTTGGATGTGTTAGAAGGAGCATGCAAGCTTGCATGGTTAGGCAAA----------AAT---------AAGGCCAAC--AATGAAGTCTCAGAGCCAGCCAGCTAGATAC-CAGCCAGGAACAGTGCAGCTATGTACATGTT--AGACATGATGTTTTCCTTTGACTTGTTCT--------------GAGACCTTTGGCCCAGTTTTTCCCCAAGCAGGCAGGGGCCTCGATAAGCGGAGGCGGGGCTTCCAGAGCCTGGA-------GTCTTATAAAGCCCAACCCAGAATCGTTGGGCATCTCTCCCAAGGGCTGTGGACTGCTGGCTTTCTGTT-GATACCTTAGAGATGCAGCGGCTTTTGGCTCCAGCGAGGCGGGTCCTGCAAGTGAAGAGAGCGATGCAGGAAACTTCGCTCACACCTGCTCACCTGCTCTCAGCAGCCCAGCAGAGGTGAGTGGCCT-GCTCAGAGGGTCTACATAGATCACTCCCAGACAAGCACCGTGGGGACCAGTAAAACGCGG------GGCTTGTTGGAGG----ACTCACTAGAACC-TCAGTCAAAAGCTGGCGAGG-TTGTACTCAGTTATAAACAAGTTAGCCTCATTTCTAGACAGCACCTGTTAACTGTTGAGCTGGAAGTGTCTAAGCcagaggtcctcagccttcctaatgctgcaacccttaat-acagttcctcaggttgtggtgacccccgcaaccataaaatta------tttttatttctgcctcataactaattttgctgctattatgaatcataatgtaaatatctgatatgcaagatgtATTTTTATTGTCGTAAACTGATCCAAGGGGACAGGA-----CGCA-CAGGACTCCCAGCCTAAGCCTCTGATGCACTTTGTTTAGGAAAAGCAGCAGCCTTTCCTCTGCCGGCCACAGGGGGCAGCAGA---CCTCAGGATCCTGCAGCTGCAGTTGTGGTTTAACTGCTTGCTGTCGTTCACTGTGGC-AAGATCCAGTATGGACCAAAGAGACGAAGCAGTGTTTCTCCGTGCTTCGGTTTTGT--------GAGATGAAAGATAAAAATTGTGTGTGTGTTTCTCACTGTGTGTGTGGGGTGGGGTGGATGGGTGGATACATGTACTTGTGAAAGAAAAACAAACATGCCTTCTTTCTTTGTAA--ACACCCTTCAGTCTCGTCCAAGTAACTGTGGTTGCTCAGAGTTGATGG-GACACATCTGGGCTTTGTGCTTCAGGCTCCCAGCTACTTGGGTG---TTTTCTCTTTTGCTCTTTGTCCA---CTGAGCTCAGAGTCCCAGGGCTTCCTTTCCACTTATACCC--------ATGAGTACTGAGTTTTTAGGGAACCTCTTTGCTATGGTGCCCTCCCTTGTCCCGCCCTGCTGGAGCCTGGGTATA-------GGTGTGGAG-GGGAAAGGAGCAGTGCCCTTAAACCTCCTGATTTGCTTT-TAGCGCCACTGACATCCACTTCCCCACCCTTGCA--AAACCACTGCGTTTTATTTGAATGTTCCAGCTTAGACTTTAGCTTGCTTCTTTTCTATTTGCGAGGAA----GTTATG-GGGTTTACTTATTTCA
s HiC_scaffold_1 108078817 1959 - 233722169 CTTAAAGTAGATCTTTCTTTCTTAGGAGACCTTGAGCTTCAAATAACAGTCACCTCATAGGGGATCCTGTACCTCTACTGCGGGACTAATTGCATCCTATTTGGAAATTGTACAAAGAT--GTTGAAACATATTGATGAACAataaagataagagaaatatatagcAGATTCCATATGCCCTAAT-ACCTAGCCCTTTGCTTATGTGCCAGTATCCATTCCCATC-ACTTGAGGGGCTACTATTAAGAGATTCATtctgctaggtgtggtggcacatgcctgttatctcagcacttg-ggagactgaggcaggaggactgctgcattcaaagcccagcctgggctatgtagtgagctcaaggccagcatgaaatatgcagcaagaccctgtattaaaaaagctgaaaaaaaaaagattcattccCTTTGGTTTTGAAATAGTTCTTTCTTATAATGCATAATACATTAAAAGAATAATAGCTAACACCACAAAG------AGGATTATAGACCAA----GACTCACTGAGATGAAAAGTCAGT-GTCTG-AGAGGTTAATTAGGTTAATTAGTGTTATCCTCAGGCATGTCAGAAGTAATGTAAAAGCCTTTCTCCATAGGCAGACGGGCATACAAATGCTGCTGGAAgagccagagaaagaaagaatcacagcCAGCCACTGTTATACACACCCAGGAACGGGGCAGGTGTGTACATGTGGGAGAGACAATGTTTTTCTTTGACTCGCTCCTGTGCTGAGCGAGCGAGACCTTTGGCCCAGTTTT---AGAAGCAGGCTGAGGTGCTG-TAAGCTGAGGTGGGGCTTTAGGAGGCAGGAATTCACGGTGCTATAAAGCCCAACCAGGAATTGCTAGACATCTCTCCCAAGGGTTGTGAACTGCTAGCTTTCTGCTCGCTCCTCCAGAAATGCAGCGGCTGCTGACTCCAGTGAGGCAAGTCCTGCGAGTGAAGAGGGTGATTCGGGAAGTGTCCCTCACCCCTGTGCACCTGCTCCCTGCAGCCCACCAGAGGTGAGTCACCTGGCTCCAGAGGTCAGCCT-GGTCACCTTTTGAGAAGCATTAT-GAGACTAACAAAAGGTAGGCAGATGGATTGCCAGAGGGAAAACTCACTAGATTTGCCAGTC-AAATCTGGCAAGGCCTGTGCACAGCTTTAGACAAA-------------------------ATTAACTTCT-------------------CAGGGG--CTCAGTTGTCTC---------ATCCTGAACAATAGTCCCT--------------CCTCTCACTCATAGAACCAGAGGATGTCAAACCTCTGACACA-------------TGCTCTTTGGGA----------------------GCAACA-GCATCGTTTACTTCACAAGCTGCAACAAGCAG-CAGAAATATCCACACCAGGgtccccagccctctcctctcctccact--------------------cTTCTCCCCTGT---CTCCAAGCTTCTACCAAGATCTTCAAGATTCTACAACTGC-----TGGAGACACCAGTGGCT-CGGTGTACTGAAGCAAAGATCC------------AAAGTTGAAAC--TGATTCTCTCAGTTGAAGTTTTATTCCAGAGGAAACTGAAATATAATGAcaatgtgcatatg------tgtgtgtgtgcact----------------tgcaTGTGATTGTGCAAGGAGCACACATA---CTTTTTCCTCTGTAACTATCCCCTCTAGTTTGTTTCAA------GTGGTCTCTGAGTGACAATGGTAACACATCT--ATTTAGTGCCTTGGGCTCTGAGCCATCTGTGTGTCATTATCTGATCTATAAGCCATCCATATCTAACCTC--------------TTTTTTCCATTGTTACTCTGCATTTGATAAATACTGGatacttaaaaatcatttt-----------cctctaGTATCCTG-------GTAGCATGGTTGTACAGTCAGGGTGTGGGGTGTTGGGGGAGCACTGCTGATTCGcttccttattttcttcattactcTGCCCTCATCTACATCCTCCCTCCTCCACTAAACCACCATTTACAGATGGAATAGCCTAACTCAGAATTCAGCT---ATTTTCTATATTTGTGAGAAAAGGGGTTGCGTGGGTTAGCTTGTTTCA

a score=43716
s chr3            98290602 818 + 160039680 GGACAG-ACTACCATACAAAGAATGAACCATACAATGTGTGTATAGCTATGTTATTAGGAAAAGTACACTTTAT---AGATAAAAaaggataaaaagatcaattcaac----agatataactactaaatttttcttcacttgataacataccttcaaaacatactaagacgtaaa--caataattgccaCATTATTGGTTGGGTTTTTTTTGTTTGTTTTTGTTTTGTTGTTGTTGTTTTGAGGTAACTGTCAAAAGACAATGAGTAGATTTACAACTGTTATTTTAACCACAGGTTTTCTACAATCCCTCCTGCTCCCCTGGCCAAAACAGATACATGGCCAAAAGATGTGGGCATCCTTGCCCTGGAGGTCTATTTTCCAGCCCAATATGTGGACCAAACTGACCTGGAAAAGTTCAACAATGTGGAAGCAGGGAAGTATACAGTGGGCTTGGGCCAGACCCGTATGGGCTTCTGTTCAGTCCAGGAGGACATCAACTCCCTGTGCCTGACAGTGGTACAGAGGCTGATGGAACGCACAAAGCTGCCGTGGGATGCTGTGGGCCGTCTGGAAGTGGGCACCGAGACCATCATTGACAAGTCCAAGGCTGTCAAAACAGTGCTCATGGAACTGTTCCAGGATTCAGGCAACACTGACATCGAGGGCATAGATACCACCAACGCCTGTTATGGCGGCACAGCCTCCCTCTTCAATGCTGCCAACTGGATGGAGTCCAGCTACTGGGATGGTACGTGTTTCCAGGA--------TGTCACAGAAGTATGGTTCTTAGGGTAGAGGCTGAGGATGGTGCTTTGCTTCTCACCTTCCTA
s HiC_scaffold_1 108105721 784 - 233722169 GGACAGGATTACCATATAACCAGTAA--CAAAAAA-GTCAGTGTAGctaa------aggaaaaatagattttatgaTAGGAACATAAGGACCAAAGGAACAATTCAACTGAAAGATATAACAAC--ACTTTTTATTCATATTAGAGCATAgcttcaaaatacattaaaacatgAATTCAAAGATTGctgtatt----------------------gttattattttgt-------------aggAAACTAGCTACAGACCACTAATGGGATTATGATTTTTGTCTTCATCACAGATTTTCTACAGTCTCTGCTGCCCCACTGGCCAAAACAGATACTTGGCCAAAAGATGTGGGCATCCTTGACCTGGAGGTCTATTTCCCAGCCCAATATGTAGACCAAACGGACCTGGAGAAGTACAACAATGTGGAGGCAGGGAAGTACACAGTGGGCTTGGGTCAGACCCAAATGGGCTTCTGCTCAGTCCAGGAGGACATCAACTCCCTGTGTCTGACAGTGGTGCAACGGCTGATGGAGCGCACACGGCTGCCATGGGACTCTGTGGGCAGGCTGGAAGTGGGCACCGAGACCATCATCGACAAGTCCAAGGCTGTCAAAACAGTGCTCATGGAACTCTTCCAAGATTCAGGCAACACTGACATCGAGGGCATAGATACCACCAATGCCTGCTACGGTGGCACCGCTTCCCTTTTCAATGCTGCCAACTGGATGGAGTCCAGCTACTGGGATGGTACGTTCTGCAAGGAGCATTATGTGAGAAAGAACT-CGGGTCTGAGGCTGAATCCTAaaa-----gtttttcttcttgctttacCA

a score=27730
s chr3            98295873 1345 + 160039680 TACGTGATTTATACATACAATTCTGAGTGAAC--ATTCCATAGCTAGACTGTGGGAACCCTCAGCATTGAATTTATATTTCAACTACAAATGGACCGTGGGTTTCACTAGAGTTTATGTGTAATTTTTGATTTTATTTTATT-------TTTGATCTGGTTCCA--TCTAGTTGCAGTATATAAAGCTGTGCTTGGCACACAATAAGCTGTCACTCTACTCTGGATTTGGCAGTGATGTCATGACTGATTAATTGTCTTGTCTGTCTTGTCAGGTCGCTATGCCCTGGTGGTCTGTGGTGACATTGCAGTCTACCCGAGTGGTAACGCCCGCCCCACAGGTGGTGCTGGGGCTGTGGCAATGCTGATCGGGCCCAAGGCCCCTCTGGTCCTCGAGCAAGGTTCGTAATAAAC-ATTCCCAAGAGGCTGTGTGCTGTGCAGCCGCGT-CATAGATTCTGCTCCCAAACTGTCATAC-------ACACTACTCAGGGCTGGGGATGCTGCTGCTTGCCTCTGAAAGTCTGGCCTGGGGAGTAGCTACTTAGGGGGAAGAGAGAAGCCGGAGTTGACGATTTCATCATGCACTGGGATAACGGTGC-ATGGGGTGGGTGCAG---------------CAAACACAGGTGAGGGAGTCAGGGTAGAGCTAACTGTGAAGGAAGAAACCCGGACATAAAGTGA-GGCTTGGAGAATTCTGCCTTCTGGTCTTGA-----TTGTGAGAAGCCCACAAAGATGTG-------GAG-AGAGAACTATAAATCTCACTTGTGTAAAACCAATAATCTGGGGCTGGGTGgtacttgggaggcagag----------gcaggtggatctc-------tgtgagtctgagtctacagggtgagttccaagagagctgttgttacacagagaaacactgtctc------------------------tgtggaaaaaaaaaaaTCGAAAAAAAAAGCAAAACAACACAACAATAATAGTCATAATATTAATACTACTAATAAAATAACTACTATTCTTTGACTCCTTTTGACTATGGGAG-GGTACTAAAAAGGCTCTGACTTGGGTATAAGTGATGGAGCAGAGCCAGGAAT-----------CTCCCCT--CCATTCTACTCAAGGCAAACAGTGTAAGGCAGTCTCTAGAAGCTTCTGTGTGCCTTTCCAGGGCTGAGGGGAACTCACATGGAGAACGCGTACGACTTCTACAAACCAAACTTGGCCTCAGAGTATCCACTGGTGGATGGGAAGCTGTCTATCCAGTGCTACCTGCGGGCCTTGGATCGATGCTATGCAGCCTACCGCAAGAAGATCCAGAATCAGTGGAAGCAAGGTCTGGGGCTGGGAGGGCAGAAAGTGGGGCTCTGCTCGCGTGGCCAGGAGTCT-----------------TCTTTTCCCCTCCCCTGTAGAGAATACTTAG
s HiC_scaffold_1 108109413 1358 - 233722169 TACTGAATTCAGAAATTAAGTTCTGAGGAAATGAATTTTGTAACTAGAATGTGAGGATACT-----------TTACATTTCAAGTGCATATGA-------GTTTCACTAGAGTGTA------------AATTCTATAGGACTAGGATTATTTGCTTTGTTCACAACTCTACTTTCAGTAACCAAAATTGTGCCTGGCGCCCATCAGGCAGGCAATGATCTCTAGATCTGGTGgtgaaaaca---atgatt-----ttttgtctgtctttgcaGGTCGCTATGCACTGGTGGTCTGTGGAGACATTGCAGTGTACCCCAATGGCAACGCACGTCCCACAGGTGGCGCTGGAGCTGTGGCCATGCTGATTGGGCCTAACGCCCCTCTAGCCCTGGAGCAAGGTTTGTAGCAAACTATGATCAAGAGGCTGTGCACTGTATAACCAAACACATAGATCTGAACCCCAAACTG-CATACTAAACAAACAATAACCAAgac-agacatggtggtgcacacctgt---agtcc-----------cagct-cttTGGTGGCTGAGGAAGGCAG---------ATTGCCTCAGGTCCaggcaagcctggactacacaatgagttcTGGTCTTTTCTGGAATACATAcctagatcttgtc-tcaaaaccaaaccaac-acaacacaacacaacacaacacaacacaacagcaTAGTGTATTCAA---TCTGGATTTGAGGATACTATCACTTGCCTCCCAAAGTGTGTTCTGTTGAGCAGAGAA---------TAGGTTGGGACGAAGAAAGGGCATCGGCCAAGGTGGCTTATTGGAATAATGGTGCACTCAGTACAGGTGCATTCAGTACAGGTGCAAAACAGAAGCTAAGGG---------AAGCAAACTGGTGATTGATGCTGAATCTTTCTCTTGAGAGTTTTGGCTTCTGTTCTAGATTTTGCCAAGCCTACATTGATATGGAAAGGGAAATATGA--ACCTCAATTGT-GTAATATTAACAAT----------------CTATTC---AGCACCTTTCAAATATGTGAGAGGGGAGGAATAGGTTCTGGTTGACGTATAGGAGACAGACAGAAGCCAGAAGTTCTTTACCTGGCTCTCTTAGCCCTTCTGCTGGAGGTGGACTGTATTCTAGAGTCCCTGAAACCCTCCGTGTGCTTTTTCAGGACTTAGGGGCACCCACATGGAGAATGCCTATGACTTCTACAAACCCAATTTGGCTTCAGAGTACCCGTTGGTGGATGGCAAGCTCTCCATCCAGTGTTACTTTCGGGCCTTGGATAAGTGCTATGCATCGTACCGCCGAAAAATCCAGAATCAATGGAAGCAAGGTATATGATTTGGGGGAAAAAGAATGGGGATCTATTTACACGGCCAACAATCTGTACCTAAGAGATgatctcttttctccttccctgaaAATGATACCAAG

a score=6427
s chr3            98296349 282 + 160039680 TGGGGATGCTGCTGCTTGCCTCTGAAAGTCTGGCCTGGGGAGTAGCTACT----TAGGGGGAAGAGAGAA-GCCGGAGTTGACGATTTCATCATGCACTGGGATAACGGTGCATGGGGTG--GGTGCAGCAAACACAGGTGAGGGAGTCAGGGTAGA-GCTAACTGTGAAGGAAGAAACCCGGACATAAAGTGAGGCT-----------TGGAGAATTCTGCCTTCTGGTCTTGATTGTGAGAAGCCCACAAAGATGTGGAGAGAGAACTATAAATCTCACTTGTGTAAAACCAATAATCT
s HiC_scaffold_1 108110070 276 - 233722169 TGAGGATACTATCACTTGCCTCCCAAAGTGTGTTCTGTTGAGCAGAGAATAGGTTGGGACGAAGAAAGGGCATCGGCCAAGGTGGCTT--------ATTGGAATAATGGTGCACTCAGTACAGGTGCATTCAGTACAGGTG-------CAAAACAGAAGCTAA------GGGAAGCAAACTGGTGAT----TGATGCTGAATCTTTCTCTTGAGAGTTTTGGCTTCTGTTCTAGATTTTGCCAAGCCTACATTGATATGGAAAGGGAAATATGAACCTCAATTGTGTAATATTAACAATCT

a score=16778
s chr3            98297279 434 + 160039680 TGCTGGAGATAGGAACCATCTCTCTGGGAAGCT--GGGCCCCTTGGCATCGTTACATTTGGCAAAGTAGGCCTCAGTGTCTCATTACC-----------------------TTTCTTGTCTAGCTGGAAACAACCAGCCTTTCACCCTCGATGATGTGCAGTATATGATCTTCCACACACCCTTTTGCAAGATGGTCCAGAAATCCCTGGCTCGGTTGATGTTCAATGACTTCCTGTCATCCAGCAGTGACAAACAGAACAACTTATACAAGGGCCTAGAGGCCTTCAGGTGGGTCTTCTTTAAGAGGAGGGAAGCGTAGGTTTGTGGAGGGCAGGCAAGGAGTGGTCTCCCTCACACCTTGTATATAGACTTTC----CTTCTAGGAGAAGCAGATGGCAGCCCTCCAACACAGCAGAAGGGATGCTAAGCCATTCTTTCAACAGAgggatagaatgggatc
s HiC_scaffold_1 108111823 450 - 233722169 TGCTGTAGGTAGGAACGAGCTCACTGACAGGCCTAGGGTCCCTTGACACACTTGAACCTGAGAGGGTAGGGCAGTGTGGCTTATCATCATGCCACCTCCTTCCCTTCATGCTTCCCTTTGCAGATGGCGTTGACCGGCCTTTCACTCTTGATGATATACAGTATATGATCTTTCATACACCCTTTTGCAAGATGGTTCAGAAATCTCTGGGTCGCCTGATGTTCAGTGACTTCCTGTCATCTAGCAGTGACACACGGAACACCTCATACAAAGGGCTGGAGGCCTTCAGGTAAGTTCTCTTTATGGCGAGCCTTG---AGGCTCTTGAAGGGTAAACAAGGAAGCAACTTCCTTATACTTTGAGTCTGGACTTGCAGCATCCCTGTGGAGAGCAAATAA----CCTTCAGTCCAACTGAAGG------ATGCCAGTCCTGACATGGAGGGATTAGATGGGCTC

a score=18856
s chr3            98299007 634 + 160039680 aatttaaaaaa-----aaaaaaaGCACCCCAGAATTTTATTTACAGAAGCGTTCTCTTGCCGCATTCCCACCCTTCTCTTGTCAACTCTCATGTGAACATCTTGCTCTGCCTCACAGGGGTCTAAAGCTGGAAGAAACCTACACCAACAAGGATGTAGACAAGGCTCTTTTGAAGGCCTCCCTGGACATGTTCAACCAGAAGACCAAGGCCTCCCTTTACCTCTCCACAAATAATGGGAACATGTACACCTCTTCCCTCTATGGCTGCCTGGCCTCACTTCTCTCTCAGTGAGTACTGCCCCTGGCCTGCCAGCTGTTCCCCCCAGTGAGTACTGCCCCTGGCCTGCCAGTTGTTCCCCATCCTTGGGCTGACAGGCCAACTAAGTTTGGCTCCTCTTCTCATTTGAACTTTT---------------GGTTTGTTGAGAGGTAGACTTTTACAATAAAGGTAGAGAGAAAG--GATGGATAGGAATATTACAACTTGTTTCAGAG-GTGGTTGGGGACAGGTTTGCTAGCT--GTTGAAC----TTCTCCAG---TATGAGTATATATGTTGGGGTAAGTGCAAGATCTACCC--AGGCAGTGAGAAAACAG---AACTTGTGGGCATATGTTTATC-------TTTAACATCTCTATATTTAATATAACATGGAGG
s HiC_scaffold_1 108115596 614 - 233722169 aattaaataaatacttaaaacacATACTCCAAAGCCTTGTCTTCAGAAACTATTCTTTCTCGCACTTTC----------------TTCCCATCTGGCCACTTCTGGCTGCCTCACAGGAACCTAAAGCTGGAAGATACCTACACCAACAAGGACGTGGATAAAGCCCTTCTGAAAGCCTCCCTGGACACGTTCAACAAGAAGACCAGGGCCTCCCTCTACCTCTCCACGCACAATGGCAACATGTACACCTCATCTCTATATGGCTGTCTGGCCTCGCTTCTGGCACAGTGAGTCTTGCTTCTGGCTTATCTCCTACTCC----------------------------------TCCATCACACTAGTCTGAGAGGCCAGACAAATTTGGTTCCTCTAGTAAGCcacacttttaaaagaaagaataagaggaggaagagaggtggga---ggaagtaaaggaagaaagaaggcagaTGAATGG---------AATTTGTTTCAAAGTGTATGCATAGGCAGATTTACCATCTGGGCTAAACAGTGGTCTCCAAAGCCGTGTGTA-GTATGTCGGAG-ATGTGCAAGATCTACCTGGGGGTAGCACAAAAATAGTTAAACTtgcatgtatatttttgtttcatttatttaaaattgctacACTTAGTAGAACATGGTGG

a score=15991
s chr3            98301426 387 + 160039680 TCTACCAAAGGTCCCTCTTTGTTAAGACTGCATGAGGCACATTTCTAGTTGCATAAGGTGGGCAGGGGTGAGATTAGACTATCACAGAGGAGCTTTATCAGAAATACAGAATACAATGCTGATGTGGCTTT--------TCTCCCCCACGGCAGCCACTCTGCCCAAGAATTGGCTGGCTCCAGGATTGGAGCCTTCTCCTACGGCTCAGGCTTAGCAGCAAGTTTCTTTTCATTCCGAGTGTCCAAGGATGCTTCCCCAGGTGAGTCTCATC-TCATACCAGGTACTCCTGAACAAGGGCCATTTGGCGAAAGAAGCCACCTCGTGCTTCATCTTGGCTGAGGTAACTGTCTTGACAGAGCTAAATTGTGAATACGAGCAAAGAAAATCCCTGCA
s HiC_scaffold_1 108117163 380 - 233722169 TCCACCCAAAGCTCCTCTTTGTACAAAGTGCTTGGAGCACATTGCCAATTGCAGGAAGTAGACAGGGACAAG-CAGGGTTAACAGGTAGGTGTTTTATTTCCTGTGCAGAATATAGTGCtgatgtgtttttggttttgatttctttccttaCAGTCACTCTGCTCAAGacttggctggctccaggatTGGTGCCTTCTCCTATGGTTCTGGCTTAGCAGCAAGTTTGTTTTCATTTCGAGTGTCCAAGGATGCTTCTCCTGGTGAGTCTCATCTTTCTATCAGACTCTCCTG-ACAAGATTCA-CTGATGCAAAAAATCATCTTCTGCCTTGCCACTGCGGAGGCTGCCATGTTGTAAGGG-------------AAGAGCAAAGAAAATCACTGCA

a score=16866
s chr3            98302378 496 + 160039680 AGCAAAGGTAGATACAAAGAAA----------------ACAGTTAGAAAAGCCAAGAGGTAA-TAGTTTAGCT-CAGCTACCTGAAGAGAAGTTGATGGATCTGAGATATCCAGTAAGTACCTGTTGTTGTTGTAGTGACTACTGTGATCAAGACCAGGCATCTAAAGTACTGTGTGGGGT--------------------CAGCCTC------------------------CAGACCCTGACTTTCTATT------------------------------------------------AAGCCGGT-----------------GATAATGACCGCAGGAAATCCTAACAATCTTGCTTTTGCTTCCCAGGTTCCCCCCTGGAGAAACTGGTGTCTAGTGTGTCAGATCTGCCCAAACGTCTAGACTCCCGGAGACGCATGTCCCCTGAGGAATTCACAGAAATAATGAACCAGAGAGAGCAATTTTACCACAAGGGTAAGAAAAGGGGCAGGAAGAGAGAAGAA----AGCAATTTACCCTGCATTCCATGCCTGTACCTAGGAGCCAGGGGTTCATCAGACATTTAGAATGAAATGGGCCAAGGTCACAATTTTTATGAGATGTG
s HiC_scaffold_1 108117622 615 - 233722169 AACAAAGGTGGATATGGGGAAACTATTTAGCTCTAGCCACAAATAGTGTAGGCAAGAGATAAGTGGTTTATTTACACCTGCTTAAAGAGAAATTGATGAAGTTGAGCTACCCAATA----CATGTTGATTATTTTATGATTGTTGTGATGGGAGACACATTGCTAA-GCACTGTATGGGGTACATCTTACTAAATAAGTACCTGCCTCTGTGTTTTCTAACATGGATGTTTGCCCATCATTACTTGGTATTTGAAACCACATGGGGAACACTTCCCCTCTGGGGTATAACCTGTCACAGAAGCTGGTTCCTTGGCAGCACTAGTGATAATGCAGTAAGGAAAGTTTAACAGTCTTGCCTTTCCTTCC-AGGGTCCCCACTGGAGAAGCTGGTATCTAGTGTATCAGACCTGCCACAACGTCTGGCCTCCAGGAGGCGTATGTCTCCTGAagaattcacagaagtaatgaacCAAAGAGAGCAGTTCTACcacaaatgtaagaaaaagggcaggaagagaagagaaaagcagcAATTCTTTCCATATTCCACACCAGTAGCTAGGAACCAGGGATTCCTCCAAAATCTAGCATGTAGTGCATCAA------AATGTTTATGACAAATG

a score=14868
s chr3            98302936 612 + 160039680 ACAGTACGAGTTCTAACAGCCAGGCAGGCCTCAAGTACCAGACCCAAGACAGCAGCTTCT---------CTAGTC---CTTCTATATGGTCCTATACAGTATATCACAGGTAATTTACAACCCCAGGCAGTGCAGCTGG-------AGTGCTTTACT-TGAGTCTGTAGGCATTCTTATTACTGTGCTCTTCCATTGCACGCCCATATCACTCTTAGTAAGTACT--GCTTGTTTTCCTTTGTCCCACAGTGAACTTCTCTCCACCTGGAGACACAAGCAATCTCTTCCCAGGTACTTGGTACCTTGAACGAGTGGATGAGATGCATCGCAGGAAGTATGCCCGGTGTCCCGTCTAATGGAGGCGAGTGA-----------ATTTGTAGAATTGGGTTGG-GGTACAAAGGCCTGGGGTCTTCCTCTGAGTAGCAGATGCAGTTCTGAGTCTATAATCACATCAG-ATGAGGCCATAACTTAGAAAATG-CTCATGAGGAAAAGTTACAAATTATAAGCTCCAAAGCAGGAGTTGGGGAGAGTAT------CTTGGAGAGCTGGA---CTGTGAAAGTCAGACTTCTTT-----GTGTATTTAAG--------TCCCCTAGAAGCTTGAGGGAAGCTAAATCTGAACCAACAAGAGAAAGCAGACAGCAA
s HiC_scaffold_1 108119075 632 - 233722169 ataataaaatttttaata---agtcaTGCTTTAAGTGCCAGATCTAAGATGACTGCTTCTTGGCTTCTGCTGGTCTGGCTTCCATCTGGTTCACTGAAGGAGGCC---------TTGCAGGTCCTgacagcaccaccaccaccaccagagcTTTGCCGTGAATATGTAGGAGTTTCTATTACTAT-TTTATCCTTCTCAAACTGATGTAACTTTTTGTGagtgttatgtttttttttcctcactgcaCAGCAAACTTCTCACCACCTGGTGATATAAACAATCTTTTCCCGGGAACTTGGTATCTTGAGCGAGTAGATGAGATGCATCGCCGGAAGTATGCCCGGCGTCCTGTCTAAGAGTGGTGAGTGAGAGCTTAAAGGATTTTT--AACTCCCTTGATGGCTTAAATCTCTGATGTCTCTCTCTAGCTAACAGATGCAGTTCTGATTCTATAAGCAGGCCAGAAAGAGTTCAGAGCTTCCAAAATGACTGGATCAGGGTATTTATACATGAGGA----CAGGGAAAAGGCCTGGGGTTCTCTTCTATGCCTGGAAAGGCAAAAGCTTAAAAGAGTCAGACTTGTTTATCTGATGTGCTCAAGATGGAGGCTCCATTAGAAGCTtgaggg-------------------aggaggaagcaggcAGTGA

a score=7167
s chr3            98308770 335 + 160039680 CCAGCCCGCTTGGCTCTCTAACCGCCAGCAGAGCAT-GTGACAGGGTCCCGCCTGTCTCCTTCCCAGTCTTGGCTCCTGTAACACTGGATAATAGGTTCCCCAGGCATGGAGACTCGGAGCTGGGAAGGCAGTGAGGGTAC-CCAGATCTCATAGAACAGGGGGGCTTATATGCATATCTATGCCTCCGAGGAGGAGCAAAACCTGGGGTCCTGGAGACCCCAGAGCAAGGGATGATTGAGTC-------TGTTTC--CCCTCTTTACAGATCCATGCAACAATTCCCCGGGGAAAGAAGGTGAGCCGAGCTGCTACCCAAACAGCATCTGCTTAAAATCCCACCC
s HiC_scaffold_1 108120273 325 - 233722169 CCAACCCAGTCTATTGTCCCATCACAGGCAGAAGATAGTGAATGATGTGAACCTTGCCCATTTCCAGCTTCAGTTCCTGAATCATTGGATGCCAGGCCTCACTGGAGTCCAGGCTTGGAGCTGGGAAGGCAGTGGGAATATACCAGAC-----------------CTTAGATGCACAGTTAAATCTTGGGCAAGGAGCAGGTGCTGGGGTCCTGGTAAGCACAATGAGAACCATAATCTagtcttctgtttgtttctttctgttctacAGATCCATAAAGCAACTCCT--GTGGAAGAGCACTAGCAGAGCCTCTGCCTATGAATCA--TGTTTAAAATACTGCCC

a score=58189
s chr3            98313060 4296 + 160039680 [encoded data, 4920 characters]
s HiC_scaffold_1 108125912 4457 - 233722169 [encoded data, 4920 characters]

a score=27167
s chr3            98318009 1815 + 160039680 GATGCAGGCATAATTAGG---GAGAGATGTCCTCTTG------TAATAAAAACATCT--------------CTTTCCAAAGACTATCAGTAGCTTGGGGTGGTTCGTTCAACTTGCTAATGTTTA----TGGTGACTGAGAGATTTCATAGTTTATGTAAGATGGTAACACTCTGTCTTTGTACTCCATGGAGTTTGTGTGAAGAAGTTCCTGTCAGAAAGTCATGGGATCTCACCACCACCTCAGGGCAGGTGGCTACCTCAAAGGGATCGCAAGGAGGGGG-CAGAAGCCTGCCTTTGAAAAAGCTGAGCAGGTCCTCTGTCAGATTGCCCAAAATGTGGGACGTTCATTAGCAGGGCATCAGCTGAGGCAGGAGAGGGGCTGTTTCATTTAGGCTTCCATTCTCTGGTTGGACAACTCAGCCAGGAGCCCAATCAAGGTCACCTG---------------CTCAAAAACTCACTGGGAGGCCAGATGAACAGGAAAATGTGCTCTGGTCTCAGGGAGCCAATACAGT--GTGCAGAGGACGGAGGACAAAC--------------------------------------------------AGGTCAATGCCATA----------------CGGTCACCA---CAGGCTCTGTAGGCTCTTACACCACA--------AGTGGCTCTCAAAGAGG----CTAATCACCACAGACCAAATG---------------------------------GCATCCTGACTGTCTTG--AGACAGAGAAC-----------------TGAGCTGTCTAAATGGAGGAAGGAGGGCTGCGCGGAA---------------------------TCCA-GCTAGTGACTATTTCCAGGCTGTGAGTCAGTTAGAAAGGC-----CATGGGTCCTCTCGCACATCCAGTTGGATCCACCGATTTTTGCAGAGTATTAAGTACTTGCTTGGTGGTCATTCACAG------AGGCTGCAGAGAAACTTAGACAGCCTTTCAGTCTTCAGGGAACTTAGAATTCAGCTTTAAC-------------AAGTTAATAGACCTGTTATGTCGTATAAGG-------------TGT---GGACA-----------GTgagtgtgacagggcacacttttaa------ctccagcactcaggaggtagagctgggtctgaggc----cagggctacatagtgagaccctgcctcaca---aaaacaCCAAACCAAACCAAAACCAATCAACCAAACAAACACAATCATAAGTAGAAAAAAAAAAAAAAAAACCCTGA----GGCACAGCTCCAATGATTCAGAAAGCATTGAAAGAGGAAGCAAGCCCCCAGGAAGGATTAGGGCCAGAATGTGGG-------GGCATCTGGTATTCCCCAGACTAAGCAAGGGGCCAACTAACAGGGAAGGTTCACAGAGAAAGCGGGGTGAGTTC-TGACTGAGGACATGA------------TGTAAAGAATGCCTAGCACACCCACCTCCTCCATCTTacacacacacacacacacacacacacacTGAGCCTCTCTCTGTCACCCTAGCAACACCACCCCACTCCCAAGGCATGTGGACAACAAAGGAGCCTTTTTTTTCTGGTGGCTGAGCCTGGGAAGGGTCA-AATCTCTGCAGCAAGGCTACAATATAACAGCTCAAAAACAGACTCCCAGCTCCAAGGTCTTAGCTATCAAGACTACAGAAGGGCTGCTCCATCCATCTATCCCAAGTGCCAACACAAGTACAGATTCCAACTCTTCAGTTCCC---------AGGGCTGAGCCTGTCCACCCCT-------------------AGCTGCTTCGTCTGTGCCTTTTCTCTTCC--CAGACTCCAG-GCCCCAGTCTCATGTTGCAATACTTACAACGCCTGTTAGAGATTTCCCCTTCACCATGTCCACAAACTGGACTGCGATTTCCTCCCCACAGCGGCTCTGGGCTTCCTTGGTGCTGGCACCCAGGTGGGGACAGCTGATGACATTCTCGTGGTCCACTAAGGCCCGGTCCCGTGGTGGCTCCTACCCAGAGAGATATCTCTAAGTTGGTTA---TGAACTGGCTATACACCCTCTG
s HiC_scaffold_1 108131439 1951 - 233722169 gATGAAGAAGTGATTAAGACAGGGAGAAAGCTACTTGCTAAAGTGACAAAAACTTCTTTCTTCCCAAATGTCTTCTCAAATCCCATCAGCAATTTTGGGCAG--AGTTAAATTTGCTAACATTTAATAATTCTGACCAAGAGATTTTAC----TAAGTAAGATAAGGTCATTCAATGGTTCCATCTGATGGCACCTG-------ATGGTTCAG---GAAAGTACTGCAGTGCCACCACTGTCTAATGACAAGGTAATTGCTCATATGGGCTGCAATAAGGAGGACACAAAACTGCCTTTTGAAA-----------------GCCACACTT-------------ATGTTGAT-----------------AGGCAGAGGA------------CTTGTGCCTCCCTTTTCTCT----AAGTCCCTGCCTGGGTCCCTGTCAAGGTCACCAGGAAGGAATTAACTTTCTCAGAAGCCTACTGAGAGGCAGGGTGAGTGAGAAACTCGGAACCAGCCT--GAGAAGCAACACATTTAGAGGAGAGAACACAAgacaggcccaggcccaggcccaggtccAGGTCTAGGTCTAGGTCCAGGTCCAGGTCCAGGTCCAGGTCCTGTTTGTTGACTCCTGTTCTGTCTCCAGTACAGGCTCTCCAGGCCCTTGCATCACACTGCTGGTAACTGGTCTTAATGAATGCTCCTGACTTCCAGGGGCTGAATGAGGGAGAAGAGtgacagcaggcagcaggcagcaggaccCTGACTTACTCAGAAGGTAGAGGGCAAGGCGGCCCCAGCTGCTGAGCTGTCCAACCAGAGGAAGGAGGGCTGAACAGAACATCAGGTCCTTTCTGGCACAAATCTGTCCATGCGAGCAAACATACCAAGGCGGTGA-TCAACCAGAGGGGCAGGGACACGGCCTCATTCACACAGCC--TT--ATTTACTGACTT----AGAGTACTGAGTATGTCCTCTGGGCCAACCCACATGCATGTAAGCTGCAGAGAAACTTA---AGGCTGTTTATTCTCAGGGAACAGAGAATTTAGTTTAAAAGAAAGACATAATGAATTTAAGAGCCTTATTAATTAACAGAAGAATAGAGGCAGAACTGCAAAGGACAAGTGAATCTTCGTGAAGGAGACAGGGCACCCTTTGAAGAAGCTATTCACTCCTCATTA------------TCTTATGCACTGCAAGGGTAATCTCTGGTGCCCAGACTTACACTTGACACATCA-----------------TCAGTTAAGC--------TTATAGG-AGAAGCCCCTAACAAGAAGTCCCAAAATGGGCAAAG-----ATGA--CAAGAAGT-------GGGGATGCAAG------GACATGATTGGG---AAACTGCTGGTCAAGTTGGCGTGGAGGGTTCGCTTTCATAAGTTGAGAACAGGTTGTTGGGGG-----------GAAGGGGAGGTAAGTCCCTGATCACAGACATGAGGCAAACAGCACTGTAGGGAGTTTACAAGATGCCAGATCCCTTCATGGGCCATCCTTATGC---------CATGTCCTGCACATGGTTGTGTCACCCTAGCAACACTCCTTTGCTCCCAAGGCATGTGGAGGACAAAGGAGCCTTTCT---CTAGAAGTTGTGCCTGGGAAGGACCACAGTCTCTGCAGCAGGGCTACAATATAACAATTCCACAG--GGCCTCCCACTCCAAGCTAT-GGTTATCAAGGCTGCAGATAGACTGCTCCTGCCCTCCA--------GGAAAGACA-GTTCAAAT--CAACTCT--AGTTCCTGGTTCTAGGAGAACTGAATCAGGTAACCCATGGAGTCACCATCCTCCATAAGACACCTCCCCTGtcttctccctctgcctccaCCCTCCAGTACCACAGCCCCATGCAATTATACTTACAACCCCTGCTAAGGATTTCCCCTTCACCATATCCACAAACTGGATGGCTATTTCCTCCCCACAGCGGCTCTGGGCTTCTTTGGTGCTGGCACCCAGGTGGGGACAGCTGATGACATTCTCGTGGTCCACCAAGGCTTGATCTCTGGGTGGCTCCTGTTCCAAAAGAGATCTAGAGGTTGGTTACTGTGGACTGGCCAGAATCCCTGTG

a score=24138
s chr3            98320125 1509 + 160039680 CTGAGATAACATCTCTGAGGAGAGAGGCCAATAGGACTGGTGCAAGTG--CGTACTCAGCACTCTGTATGCT--------GAGGCTAAACCTTTGAACATGCTGGGACAAGAAAGAGTACACTCTGGGGACTTTGGGAGAATACTGTCATCATTCCTGGGCTTCTGAGCCTCCCTGGGAAGGGAAGAGGAAAAGAGGAAAGCTAATGGGTACCAGGCAGGCCATCTTCTTGGCCATATGGCTG-ACTTAAGT-----ATCGGGAGTGGCACAC-AAACTCCCCTTG------------------------------------------TCTTCTCCAAGTCATCAATACGGCAACAGCCT-----------GACCAGGAAC-GGGTACTGTTTAA---------------------------------------------------------------------------------CAGTTTAACCAGGAAT-------------------------------------GGGTTCTATTTA--------------GGACCT-------TAGTTTTGCAGAAGGCAGCACA-GCCTCT-----------TCAAAACCGC------------AGGTGTGTTCTTGGCAC------------------------------ACAGTGAGCTCTTGGGCTTCAAGATGGCGCACTGTCTTGCCCAAGGCCTTTGTGCTCCCCCCTCACCTTTACCCTCTGACCCCGACACAGAGGCTGCAAGCACTTACTTCTGTAAACACATCCAGTGCAGCCCCAGCACACTGACCAGACTGCAGGGCACGCAGCAGGGCACCTTCATCCACAATGCCTCCTCGAGCACAGTTCACTACTCGCACACCTTTCTTGCACTGAGCAAAGGTGCTGTCATTCAGCAAGCCTGGAAGAAAGAGGAGA----------CTATTATGATGGCTCTTGACCCT---------CTCACTTAACAGGTCCCATAACTCACATCTCCCCAAAGGCCTCTTTCTCCTGGATAGCTACCT---TGTTCTCACTTCTGTCTTCCTAGATGCTCTGGGATAATAG-ACCTTGTACTAGATGTGGGTTAGAGTCAAGAAGTTTAGGAA---------------------ATG-GTGCTTGG---TGGTCCAA------CAAAATGCCCTGCAGG-GTCCCATGAAGCCTCTACCCGGG-------------ATGC--------------------------------------------------------------------------------------------------------CAGTTGTACTACCTCAGTCT------------ATTTAGACACCTGGCT-------TTTCCAGAGAGCTCACCCC-------------------------------------------------------TCCTCCATC----------------TGAGGCAA------------------GGACTTG---------TGACAAA------------------------GTATCATCATGCTCAGCAGGCCCCAGGCAGCT-----------------------------------------CCCTCCCTACACCTGCTTGATGATGTCTGCAGAAAACCCACACTGAGAGC------------------------------------------------------CTACCTGTGGTAGAGGGCAGGAGTGGGGTATGGACAGTTATAAAGTCACAGAGAGGCCAGATCTCCTCCAGCGGCAGCTGCTGAACACCAAAGGAGGCGGCGACTTCAGGAGAGATGATGGGGTCATAGCCTACAGTCTGGTCAGAAGTGAGAGAAGGCAGAGGCATCTTAATATCAA----TAGCATCATTATCAGTAACTGCA---------CCATCAGTAACT--------GGTGCCACACGAAACCTAACTGAATTCCCTACTGTAATTCTCAGAACAGTACAGGAGGCTTGGGGCTACGCTCCTGAC--------------GGGAAGGAG-GCTTGC-------AGAACCAGCAGGGTGCACAGCCAGCATAGAGGGGAAGAGGCTGCCTCTCACCAAC-CTCCAAACCCCCCAGCAGGTGCAGGAGCAACTTCGGTGTGGCTGGACCAAGTGGGTCTTGGAAGC
s HiC_scaffold_1 108139845 2150 - 233722169 CTGAGGCAAGATCTTTGAGGAAAAGGACAGAAAGTATT----CAAGTAGAAATACTCTGTCTTCTGCATGTCATTTGCAAGAGAATAAGC-TCTGCTCCTGCTGGGA----GAGCAGCACACCCCGGGAACCCTGAGGGAAAACTG-AAGTATCCTCTAGCTTTGGTTTCTCTGCAGGAAGGG-------------GAATGTCAGTGGATGCTGGATGCACTGTCTTCTTGGCTGTGGGGCTGCACTTGAATCAGGGACCTGTAACAATGCACTAAACTCCTCTCACTCCTTACCCCTAACCCTCAATCTTACTCATTTGTCACTTCATCACCCCCAAGTTATTAAAATGACAATAGTCTCAGAACCCCAAGACCAGGATTAGGGTCCTATTTAAACATCTgagatttgctttgttttactttgaggcagggtcttgctataacATTCAGataagccttgaactcactatgaagctcaGTCTAGCCTGGAACTCAGAGCAAACCTTcttcttcagcctccagagtgctgggattataggtatgcacaaTCACACCAGGCCTAAACATCCAAGTTTGCAGCAGACATCACGCACCTCTGTACCAAGTTCTCAAAATTTCCTCAGCCCACAGAGATATAGTCTTGGCAACAGTTTCCCTGCTTCCAATTGATATTGGAGACAGTAAAATGCTGGGCTTC--------------CCCTGTACCAGGCCTCTCTGGTCC----TCATCTCTTCTCTCTGGGCCCCACATAAAG-CTGTAGGAACTTACTTCTGTGAACACATCCAGTGCAGCTCCAGCACACTGACCCGACTGCAGGGCCCGTAGCAGGGCACCTTCATCTACAATACCTCCTCGGGCACAGTTCACCACACGCACGCCCTTCTTGCACTTGGCGAAGGTGCTGTCATTCAGCAAacctggaaaaaagaaagcagttgGCTTTGCTACAGTGATG--CCCAGATCCCACACCAGCACTGGCTTCACAGGTCC--TGCCTTTCTTTGAACCACAGGCCTCTTCCT-GTGGACAGATGTCTCTCTGTTCTAACCTCTTCCTTTTCAGACACTCAGAGGCAGGAGTTCCTGGTTCTGGGTCTGGAATAAACTC----AGTTTAGAAACATCTTAGATATTCTAGAGACATGAATGCCTTGAATGGGTCTGAAAGAATCAGAAAGCCCTGCAGGTGCTCCAGGAAGCATCCACATAGGCCACTGCTTGAACATGCATCAAGCTCCAGTAATGATGGTACCCAATGCATCCGGTGTGACTTACATGAGAGCGTCTTGCACACAGTGAGTATTGAATAAATAGCCTTTATTAACTATGAGGCTGTTTTGCTATCTGAGCCTTCCATGAGGTCAAAGTAGTCTCCTGCTTGCCCCCATCTCCTGGGAGTTAacccccttttttcctttctttctttctttctttctttctttctttctttctttctttctttcttccttccttccttccttactaGTGGTCCAATGGAGAATCATTTGTTTGGGCCCTGCTTGTTCCCTGACCAGCTCAGAGCAATATCCCTTCCTGGTGTTTCCCCATCCCCAGT-GCACCCATACAGTTTACACCCCTCCTCCATCTAATGTAGAAGCACCCAACAAAGCCTCTCCCCAAACCTGCTCACCAGTGTCTGCAGAAGGCCTAGACTGAGGGTCCACTCCCTATCTGCTCTGTGGCCTCTGTGATGAACCCATAAGGTAGGGGCACACTACCTGTCGTAGAGGGCAGAAGAGGCGTGTGTACAGTGATGAAATCACAGAGAGGCCAGATCTCCTCCAGGGGCAGCTGCTGGACCCCAAAGGAAGCCGAAACTTCTGGAGAAATGATGGGGTCATACCCTATAGTCTGATCAGAtgtgagagaa---aaagaagtaTTATTATTAACTATTGGCATTGTTATTAACAACAGCAAGCATTTATCAAGCAATTACTACATACTAAACACTATGCTAAGCTTAATTTGATTGTCCAGTTTAATTCTC---ACAATCCAATCAGCTTGCTGCTGTTCTTTTGCCTGCTTTAGAGCTGAGGGAAGCAGAGTTTGCTCAAATAAGAATCAGCAGAG------GCAGGCAAAG------GGAGGCTTATTTCCCTTAATGCTCCAA-----CCACAAGATGCAAGAGCACTCCTTGCGTGGCTGGGCAAGATGTAGCTTGGATGC

a score=31654
s chr3            98327222 2796 + 160039680 TGGGATGATCTGATTATTGTCAAAACAATTTGCTCATTATGTTTAACTAAAGCCTTC-TGGCTGCTGTGTGA-------CCATAATCCCTGTAATTCCCTCAACAATCACATTAAATATGGAA-TGTCCATTGGCATCCACTCAGCTGCCTTCAGCTCTC------------ATGG--CAGACGAGCATTGGTCACATTTGTCC--------------------------------GTCATCCAGCCAGGACCTTCCTGA----------TCCCACAGTTGGAAAA-AGAGAGGGTTGAAGTGACTTCTGAGATA--TGAAGCTGTCTAGTAATTTCTCA------TATCAGGGCATGCAAACAAGCAtgtattttacagaaagaatcttgttatgtaacccaggctgggtttgaactcatgaaccacctgccaaagcctc---ccaaatattgagataataaacacaggacaact--atgcccatctatcggcacctttaaactttgctgggatagtgagggaaatagagaagacagaa--agcatttcttggctataaatctgtttttgAATCATCAGA--------GAGAGGAGACACAGAATAACTAGAAGTCCCTTGTAACACCACAAGAAAGGATGTGTGTTATGGAAGAACATTTGCTGGCCCA--TTGAGACACAGGGCTATTGACACCCAGGAG-TTGAGGGACCTGCATCAAGAATTC--------TCAGCTTTTGAGTTCCAA-------TGTCCTGATAGGGAGATC-------------------------------------AAAGTTCCTTTTTCTCTCTGACTTTACTGTC--TGTTCAGTAATAGGCTCTAGAGAT--------------------------------CCATGTA--------------------------------------CAACA----------------AAGCCTTCAGCGTCTTCCATGCTTAGCCATCTCTTCCAATACTGCTTCAGAAAGAATGTGCCCAAAGTGTCCGGAAACCTCTTACCTTCATTCCAAAGGATTGCATTCGGGTGGCCACCTCTCTTCCAATTCTGCCGAGGCCAAGAATTCCCAGTGTCTTCCCGTTCAGTTCTGTCCCCATGAACTGCAACCAGAAAGGCAAAAGGCAAAGATGACCAAGTCAGGTCCAAGAGTAAGGGTTGGGAGTTGAGCCCGCATGggcaaggcaaggcaaggcaaggcaaggcaaggcaaggcaaggcaaggcaaagcaaggcaagAGCTCACCTTCTTCCGGTCCCATTTGCCATCTTTCATCGAAGCTGTTGCCTGGGGAATCTGCCTGTAAGAACA-CAGCAGGTTCAGT-GGGTCACC-------CTACAGCCCAGGAAGAAGGTACACCGATATCTCAGTGCAGCCACTATCTATCTCTGCCATTTTCCTGAGAACCACACAACGTGGGTGGGTGGGGGGCTCA-GGTTCAGGGCCACTGTGTATAAGGGAAGGCTGGGACAGTGAGAACATTGGTAGGACATGACTTGGGAACCATAGAACATCTGTCTCTAGCCAGGAGGCTGGGGGAAGAATCTGATGTGCTCTAA-CACCAAGGTACCAAGAAGAGTGAGTGGGTTTGGCA-AGTTTTCTCCTATAAGCAGC-ACCAGCCTTCGAAAGCTTATAGGGACTGATG-----------------CTTCAAAGACTCCTGT--------------------------TTGGTTCTTCT------TCTGGACCAACCACTCTTGATAGCTTCTCTTGTTATCAAGG-GGCAGGTGATTAACCTTTCTTC------------TTAAACCCCAAGA-----GAGCTAATCTGAAGCAAGTGGGTACCATAGCAACACAGCCCAGACCTTTCTACTCAGTCCTGAATGATCCTAATACTTCTGACACGTCCACCACCTGTCCTACCTATTTTTGACCCAC----CCTCGCCCACACACCACAGACTGTCTCTTTCTATTGACTCCTGTGCAAGTCCAAGTTGCCATGTTTTGTTTTCTGGATCCAGGAGAGA----GTCAGTGAGGACAAAGTTAGGATTTAAGGGTAAGACACAGATTGTGGGACATGGCTCCACGATCACCTCTGGGAACA--------ATGAGGAATGGCTTTGTGCTGTGCACCTTCTCCATGCTGGACTCTG--AGAAGAGCTCGG-------------------------------GCCCACACCACTCATCTCCTGAGGGAAGGAGTTCATTCGTGCACGCTGTAGGCACTTAGGCCTGGATTGCTGCCTTGAGAGCAGA--ACACCCACTAGCGTTCTGAGTCAGGCACTTCCTTCCCCATAAGGTACACACGAAGTGGTTTACACCCATCTTGGATGAGGAGTTTCAGCAAGGGATTTTGGGAGAGGGGGACCCTCTTCAAATTACAGTACTCTGACTGCTCCTTTCGATAAATTGACCCTGGCATTGGAGGGAAAC--CTCCTCCCTCTCAAACCTTTTCCTCACCCTCAGGGATGGGGGA-------AATCAGAAAGCTGTGTT---------------------------------------GAGGGAGACTTCGTATACTCTGACAGGCAAAGGTATCA---------------CTTGGGAG------------------------------ACCTCGGGGAACCTTCCA-GCTGAGGCTCTTCTGCTGCATATGCTGGGCTTGGTCACCTCCCCTCCCCTCCCCTCACTGACCAGTGCAATGTTGCACTG-------------CTAGGCAGGAATCTTG-GGAGAAGGTAGAGCAAAGGTTAACTCA-------------CCCAGCAGGAAGGAGAAGATAG-----------GAAAGAGATAACTTTTTAATCACCGCAGGTTTCAGGCCCCAG-------GCAAGA-GTGCTGGCTGTCTGGATCTTTAA-----------------------AAGGGATTCAGAACAGCTTCAGCCCCCCCTTTACTAGAAAGCCTGT-----------ATCACAGAGACACAACACACACAAATGCCTATTAAGTGTGTTATATC----TGCCAAACAACAACTGTCCGGCTTGTTAGGATGCATTCATATATATATATATATGCGCCATTAGACATTAGACTGTCCCCA-----AGGAGGC----TCACACATCCCAGA--------------ACCCCGCCAGAAGAGCTCTCTTA-GATAAGAATCCACAGGTAGGCACATGAATGATGATAAGAGTTTATCCCATGC-ATTACAATACAGGCCTA
s HiC_scaffold_1 108148759 3152 - 233722169 TAGGATGATGTGGTTATTGTCAAAacaattttctt-taatgtttaaCTAAGGGCTTCCTGGCTGTGGTCTCAGTTTGACCCATAATCCCTGTAATTCCCTGAACAGTCATAGTGTTCATAGAGGTGTCTGCCAGC--CCTGTGGGCTGCCTCCCTCTCTCCGGCCTCTCTGCGTGGGTCTGAAGGCGATTGGCCTTCCTTGTTTTCAGTCTCCTGAATTGGCCTGAGGATGGCAATGCTATTGATCCCAATCCTTCCTCAGCCAGAAGCCTCCTACGGTTGGAAGAGACAGAGGTCGGTTGTGATTTCTGAGAAACCTGAGGCCTT----TGGCCTCTGAAATCATTATTACAGCATGCACACAAGCAC---TTTTA-------AATCTCTTT--GGAAACGTGGAAGGAAATGG------GAAGAACAGGACAgtgtcttgggctggggatttagctcagtggtttaaagcgcctgcatggcaagcCAGTGTGAT-TGTGAATTT------GATATTG--GGTACCAGA-ACGACAGTGCCGGTATTGTAAAGCTGTAAATTTGCTGCTGTTTCCTCAAATGTCACAGGAGAACAGATACAGCAGAACCAGGA---CTTCACAccaagatgggaaaggataagatggaGACAAGAACGTCTTCAGGTCCAGGTAAAGAGAca----------cattcaggagactgaggcaggaagatcacaagtttgaactcaATCtggtagtgaattcaaggccagcctgtactaagTAGGAGATCTTGtcttgacaaaacaaaacagaacaaaacaaacaaaacaaaacacttctctCTTCTGCATTTCTGTCCATCTCCACTACAAGGCACTCAGGGTTATCAACTCACTGGAGAGCTAGAGGACTTCCCCCATGTATACCTGGCATTTCAATTCAAGTATCTCAGTCAGTTGGTCAGCATTTTCTCTGCTGGAACAAGGTTTTGGCTTCCCCTTAGCCTAGCCACCATTTCCAACATGGTAGCAGAAAGC--------------CCCAGTGACCTCTTACCTTCATCCCAAAGGACTGCATCCGGATGGCCACCTCTCTTCCAATCCTGCCCAGGCCAAGAATCCCCAGGGTCTTTCCATTCAGTTCTGTTCCCATGAACTGCAACAAGACAGGCAAAAGGC-AAGAGGCCAAAGTTAGCACCTAGAGAA---------ACTCAGGCCCTGCT--------------------------------------CCAGACAGGGTGAGGCGAAGCTGCTGCTCACCTTCTTCCGCTCCCATTTGCCAGCCTTCATCGAAGCTGTTGCTTGGGGAATCTGCCTGCAAGGACAGAAGCAGGTTCAGCAGGACCACCCGGGCCTCCCCAGCCCAAGAAGGAGGCACAACGACAGGTCTGCACAGCC---GTCTGCcctggttattttcccagaaaccaAGC--------TCAGTGTGGGTCTTATAGTTCAG-----CAGGGGAAAAAGAGAG--TGGGAGAAGGAAATACTTGGAAAGACCTGAGTTAGGAACCCTAGCATCTCTGCCTTTAGCAAGAAGTCTAGGAATAGATCCTGACCCACCTCAGCCATTGAAGGATCAATGA----GAATGGCTTTAACAGAATTCTCTCCTCCAAACAATGGCCAACTCCC--CAGTTTGTAGGGACAGATGAACAGGACACTGGGGGACTCTGATGACAGATGTTCTACCCAGAAGTTTAAGGTATTATCTTAATTTTCCTATCTTGTCAAGACC-ACAACCCTTGATGTCTTCTTTTATTATCAAGGAAACCCCTGATTGCTTATTCTTCCCTGAGAGTGTTTTAAGCCCCAATGATTTTAGCCCAGTCTGCAGTGTGTAGGTACCAT--------AGTCCACACACCTCCATGCTGTCC----TGCTCCCAACATTTCCAACATCTACACCACCTTCCTGCTCTGTCACCAACCCTTCCTACCTACCCCATACCCCACAATTTGTTTCCTCCTTTTGGTTCATATGGAGGTCTGAATCTCCATGTTTTCT-------ACAAAAGACAGAAGTTGTAATTAAGGG-AAAGTTAGAGGTAAAAGGGTAGGCCTGTTACATGGG-CATGACT-CACAGTTATCTCTAGAGGCAAAAACTAGATGAGCAACAA-TGTGTAAGGAGTATCTTCTCCACTTTAGACTGTGAAAGAAATGTTCAGTGGTTCATGGTTTATTGAGGTTTGTGGGTTTGTTGAGACTTCTCAACTGC--ATGGAAGGAG-------GTGC--------------TGGGGCTGAAGAGCTCACCCAGCACCACATGACTGCAACCAATAATGAGAGTAACAAAATCGTTTCTTAATGGTATGCCTGTTGCTTAGTTC-CATGCATCTTTGATGAAGGAGGTCATGGATGAGTGGCTGGGATTGAGGAATTTCCTTAAATTATAGTACTCTGTCTA---CTTTAGTAAAGCTGGTCCTGGAATAGGAGGGAAATAACTCCTGGCTTCAAATCCCCTCCTACATccagaaaaaagatagaattaaTTAAACAGAAAGTGGCACCCAAATCCCTCccccactgaaaaagaaagaggtggagagagaaagagagaccctGAACTCAATAGTGCAAATGAAACAGGTTCAGTGTTGCTCCTTGGGGAGGGGCATTCAGCCCTGATGTGTTCTGGGCCAGCTTGGAGGCCCGCATAGGCTGAGACCACTCTGCATTTTATGTTGCCC----TCCCTTTCCCAATCCTGCCTTCACTGACAAGTA-AATAT--CACTGAATACCTGAGGTCCTACATAGGAATCTTGCCCAAGAGCTAGAGCAAACGTTTACTTATTCTTTAGATCCTTCCTCCACAAAAGGGAAAATAGGTCTTGAAGTAGGAAAATGGGATTTTTTGGCCCTGGAAGGTTTCTAGCCTGAGCAGAGAAGTAAGATGTACTAGTCACTTTGACCTTCTAGTTTAAGGACTCAAGAATCTTCTAAAGGACTTGAAACAGCTTTC-TCCCTTGTTTATTGGGAGGCGTGTTCTTCCTCTTGATCACAGAAATGTGTAACATATTGATTCAAAATA---GAATTACCTCGTTTTGTTA---AATGACTTCCCAAAATATTAGGA-GTATTATGAATTATGTGT-CACACTCATGTGATCACTAGACTGCCTCTGTTTTCAAGGGGCACCGCCACA-ATCCCTGATGAATGAGTAACAGACTTGGCCACTTTAGTTCCATTGTGTTATGAATCCACAGATAAGCA-------GAGAGCAAATGTTTAT-TCATGCTATTATAATACCGATCCA

a score=35374
s chr3            98333108 2266 + 160039680 GTGCTTAGCATCCTGCAGAACTCCAGACTGAGGCGCCTGGACCTCTTCTAGGTCCGTTT-GCTTGCTGAGTGGTAATCACTGACCTCGCGGAACGAGGCTGGGTCGTCTGAGAAGTCAGGGGCTTACCTGGCCAGGCACATGATCATCCCACAGGTGAGCTCCGCAGCACTGAGGCTGTTCCCGTTGGGGGTGCTAAAGACCCAAAAGAAGAA--------TGTCAGTGGGCCCAGGCAAACCCAGCACTCAACACTTCCAGCCCCGGGCTCCCATTCTGGCTTCTCTGACATTCTGCTGCCCTAA--------------GAACCAGGCTACCT-TGGCCTCCTGTTCCAAGGCAGAGGCCCTCCCTCAGGCAGGCACA--------------------------------AGGCAGGGAAAC-----ACCTGATGGAAAGATGGAAGAGTAGTTTGGCCCAGTTCTCTCTCATTTCAGGGCCTATCCATCTACACTCTC-CTCTGATCCTTCCTTGCCCGAGCCCCTGAGCCAAGTTTACAACAGTCAGGTCAGCCTGCTGCTGAGTAACCCTCC-TGGGGTCCCATCAG----------CTGGCTCGTATTAGGAATGAAGCTCCTGTTTTTATC----TCTGTTTGGTTTCTTCTTTTTACTCAACAAATTTCGAACTGAGAAAAAGCCCAACTCCCCAaaacacaacaacaaacaaaacaaatgaacaagcaaacaaacaaCAACCCaaaaaaaaaacaaaaaacaaaaaaaaaaaaaaaaaaaaaccaaaccaaaccaaaccaaCAACAAAAAAACCCAGGGGATCATGTTGACAACTCCAAAGCCTAACACACATTTATTTAAAACTTCTGCTTCCTCTACAGG----TTAAGCTCATCTGTAGAAGGTTACAAAGAG------TTATGAGGCTCTCTGAAAAACAAAAGGACTGTAAGAGTTTGTCTTTGTGCAAGACAAGAGAACTTCCAGTTCTTCCCT--CAGCAAGC---AGTTAAGGTGTAGGCAGAAGTGA-------GGCTGGCGGCCCCTGTGTCAGGACCACAAAGTAGGTAGGATGGGTTATCCTTTAACATTTCCATCATCAGGTACTGACCTCTGTCAGTCATTCTGTCCATTAACCCCTACCCTCCTGGGGGGAG-GGGAAGAGGGAAGAGTCAGCAAAGTAGACTGGGAACAAC--------------------------------------------------------TATACCAC-CAGGTTCCTAACTCACGGCAGTGCAGCAATAGCCTGCTGGCCATGATC-----TTTGCCCCTGGGCTTCTATAAACACAGTGCTGACAGGGACCCCTCTC-CTCTGGGGCCTAGAGTGCT-AGGAAGAAACTGGGATCTTTGCTTCAGACTGGTGCAGGGAAATATAGGAAGAGACAAGATGGGAGGTCACCCCACCAAGAAAGTGTGTGCATCTATACAGGGTGCAAGACCA--------CTGAGCTAGCAAAA-----------------------------------------------------------------------------------------------AAACACAAG----------------------------------------------------------------------------------------------------------------------------------------------------AGCCA-------------------------------------CCCTCAGCTCCCAGAACTTACTTCATGACTAGGATGCCCTTCCTCGTGGCAGCCTCCAGATCCACATTGTCCACACCTGTGCCAGCCCTGCCCACCACCTGGAGCTTCTCTGCTGCATTGATGACATCAGCAGTGACCTTAGTAGCAGACCGGACAATGAGGCCTTCACAGTCCTGGGCAGAGGAAGACAATACCAGGGTTCATACAATTTTTCTGTAATGTACCTGAGGACTCTGGTGG--------------------------------------------------------GTTCCGGTGGGCACAAATGCCCACTCACAG-GCACATCAGGCTTCTTTGCATACTGTAGGGTAATGTGGACATTTGAGAG----CAGTTGTAAGACACGAGT--------ACCTGGTCAGTACACTACAGCT-ATAACATCGGCTTGCTGGCTCTAGGCATCTGATTAATCTTTCCATAGATGGCGCCCCCATAAGGAC-CTCGAGCCAGAGAATAACCCATCCTGACAGTATACCTCAGTGTGACCAGACACATGCCCCAGTCAACTCTGT-ACACACTGACATTCCTTGCCTCA------------------------------TGGGTAAATTCCAAAGAAAGAA--CAGCAACTCCTGTATACTCAT-----------CGTCCGTCTGGCCTGCATC---CTCTAAGCTGCATCCCTTATCTCAGAGAGATTTAGGTTCGGGCCTCAGGTATGGGAGAAG-GAAAGAGGATAGGCAGGTATGGATAGCACTTGGCCCTGTTC----CACATCACTTCTTCCATTGGACACTGAGCTGCTCAAGAGCAGAGGTGAGATCCAATCTCACTCCTTGAGCCCCTCGCCAGGCACGTGGAAGGAAGATGGCTGTAAACGCTGGCTGGCGGAGTAAGTAAGCGAAATGGAAGGAAGTGCC---TGCTGAAAGGAAAATGGTTCTT------GAGACCACACAGGAAGGGAGAGGGAAGAGCTGTGAA
s HiC_scaffold_1 108152313 2717 - 233722169 GTTCTCAGTGGCCTGCACATCACCGAGCTAAAATGTGTCTGTGTTTGCGAGGACCATTTTGCTTGGCAAATCGTAAGAACTGATGTTACAGA--GAGCTTGGCTCTGCTGAGAGGTCAGGCACTTACCTGGCCAGGCACATGATCATTCCACAGGTGAGCTCTGCAGCACTGAGGCTGTTCCCATTGGGGGTGCTGAAGAGCAAAGGAAAGAGGGAACATCCGTCAGTGAGCCCAG----ACCCAATATTTCACTGTCTCA-CCCAAGGTCTCGATGCTGGACTGCCTGGCATAATATTGCCCTAATGCCAGTATGGGAGAAAAGAGCCTTTCTCTGGCCTTCCCTTTCTACGCGGAGGTCA-CCATCAGGGAAACACACAGATCCTTCTCCTCATAACTCACTTTCCCTAAGGCAGTGAAGTGTCTTACATGACTGGTAGATGCATTAGT-GCTCAgtcctttcctttttcatttcaggAT-TGTCTGCCTGCAGAAAAGCTCAGGTCCCTGCTGTCTCATTCTTTGAGGTTGAGTCCAGGAGGGCTAAGC-------------AGACATCATCCATGGGACTCCATCAAGATATCCAACATTGCTTGTGTTGGTAGCAAAGCTAAGATTTCTGTCACCATCTGTTTGACTTCTCCTGACT------CAAGTTCTGAAGCAAAGAATCTCCTAACTCTCCGGCACACAG-----GGCAGTGC---TGACTCTGCCCAct----------------------------ttacagaaagagaaacagaggctgTAACACaacctttttcttctcttaaaggc-----------tatttatatttttgaaaaattaaatgcacGTGTTTA---CTTCC-CTTCCTCTACTGGGTCTTTGATCCCTAGAATTGAAggagacaaggaggaaaactcAAGTGATCATATAGGTGCTAAATGGACCCCCAAAGTTTATGTTTCTGTGAGACTACAAGGCTTCCTGTTTTCAGCTAGCAGCAGGCTATagtgggggaggaggaagaggtgatGACTGGAGTTGGCTGCCTCCGGGTTCAGGGCA-AGAGTA--CAGGATGAGTTACCCTTTAACATTTCTACCCTCCAATACTGACCTCAGTCAGATGTTCAGTCAGTTAACCCCTACCCTCCAGGAGAAAATGGGAAGTGGGACAAAGGAACAATCT----TAAGGACAACAAGTTgcccaaatgaaaagaaagggctTGAGGTCATAGAGGACATAGATGGCTTTGTACACCATGTAAGTGCCTGAACAGGTATGGTGCAGCACTGGTGTGCTGACAGTGAGTGACCATCTGACCCTGGGTTTCTGCCAAAAGAGTTCCTAAAGTGTTCTTCCTTACTTCTGGGCCTGGAATGCTCAAAGACAAAATGATGACTTAACTCCAGAA-GGTACAAGGatatg-aggaagagaaaggatT--CAGTCAACCCAATA-GAAGGATTGTGGACCTGTACAAGGTAGAAGAATAGTGTAGAACAGAGCTAATAAAACCAGTCACAAATAGACCAGTGGAGGGGAGGGCCCCAGCTGGAGCAGAGAAGGTGGATAAATTCACTAAGGTTCTGATTCCCAAGCCACCCTGTAAAGGCACAAGCCTTATATGAGGCTGGGTTTGTGGAACTTCCTGAGATTCCACAGAGTCTCAGTCTCATCACCTTGGGAATGCCTGAGTTGCAAGGGTGACCATCCCTAGGGTCTCCAGGCATTCTTCTGGAAGCTCTTCCACCTGACTTACTTCTCTAAGccaactttttcctttctctccatgtggtcttcccctccctccttcagCTTCCATGACTTACTTCATGACCAGGATGCCTCTCCTTGTTGCGGCCTCAAGATCCACGTTATCCACACCTGTGCCAGCCCTGCCCACCACCAGGAGCTTCTCTGCTGCATTGATGACATCAGCGGTGACCTTGGTGGCTGACCGGACAATAAGGCCCTCACAGTCCT-----AAGGAGAAAAACATCGGGATCTACAACATTGTTCTGCAAGGAACTTCAGAAGCTTCGGGGTAAAGTTACTCCTGGTTAAGAAATACAGAGAGTCAGTGATGCTGCCCGCGTTAGCAGTTTTGGTGCGCTTGCCTG-CCAAGCACAGTGAGGACCAGGACT-----CATACCAAATTTTCATTTGGA-GTCGGAGAGGCTATGGttctaaaacatgtattttgcCTGACCCAGTCA-------ACAGTTGACAACATCAACCCACAGGCTCCGATTACATGGCTCATCTTTCTGTATCTGGGCCCACAATGGGCATGCATAACCCAGGG-------CATGCTCAGAAGGTCTGTCAGAGTTCAGAGAC-CACTTCCTAGTCAACTCCATAAAATTCTAATATTCCTTTGTTCAAAGTGGGAGCTCCTATGAGCTGGCTGACTGTGGCTACAGCCTAAGAAAAAAAGGCAGTATCTTTTGTATACGCATCTGGTCTAACACATCAGTCCAACCTAGGTTGAAATTCATGCTGCATCCCTTACCAGCTATGAATCTGAACTTCAGCCTCAAGTGTGTGAGAAGTGAGACGGGACAG--------GAACAGCATCTGGTTCTGGCCAACAAACATCATCAGCTCCACTGGACACTAAGCTACTGAAGGGCAGAGGTGGGGTCTAATTCCACTTTGCAAGCCCAT-ACCTGACACATGaaggcac----tcaataaatgctgGTTGACAGAATAAGTAAATGAGGTGAAGGAAAGCTACAAGtgctaaaagaaaaacatttcctaaAACAGAGACCAAAAAGG-AGTGAGAGGGAGGGACAGAAAA

a score=5387
s chr3            98336856 165 + 160039680 TTTACGGCTGTTCCAGAAAAAACTGTGCTAACTCAG---TGGAAACCTATCCCCGCTCTTGTTCTTCAAGTTCACACATGCTTTCTTTCCCAGGAGGATGGCCTTGGCCTTGTGGGTAATTCAATTATTGTTAAC-------ACTTAGTGCATAGGGCACGttagagaagctctc
s HiC_scaffold_1 108164616 165 - 233722169 TCTATGGCTGTTGCAAACAAA--CACATTAACTCAGCAGTGGAAACAT--------TCCTGTTCTTCGAGTTCACACACGCTTCCTTTCCCAAGAGGACAGGCTTGCCCTGCAGCTCAATTCTAGCACTGTTTCTGCCTGTGACTTAAATCATAGAGCAAATCAATGTAGCTCTC

a score=34536
s chr3            98338959 1272 + 160039680 CTTTTCAAATAAGTGAAAGACTT--------TTAAGTTT-TATAACGATTAGAGGTTTGCTCCGAAGACTTCGTAGAAGT---AACCTGTCCCAACTGCGCTTGGAACAGGATTCTGATGTAGTGAAGTCGGGCCTGATCGGCAATGAAGCCAATGGTGGAGGTTGACTcccggcggcggccgcgtgggcggcgcggggctccggctgcacccccgggccgcccggAATCCTGCGAGCGCTCCCCGG-GGCGGGGG-------AAAGAGCGCCAAGGTCTTGCATCAGACAAAAGGCGGTGCGAGTCCGCTG---------------------------------CCACAAATGCCACGGGACCCGC---------------------------------------AGGAGCAGAG--------------------CCAGCGC--------CCCGCGCCCCCTGCCCCCAC------CCCAGGAGTCTGCACTGAGCAGGGATGGTG-TGCGTGTAGCACCCCG---AGCCGGGAGCTCGCAGCCTGGGTCGCCAGGCACGAAAGCTCCAGAGAGGTTCTGGCATTCGAGAGAGGTTCTGGCATCCC-GCAGGACCAGATGGAGCAG---CTGCACT--TTGCAGC---GCCGGCAAGAAACACGCGGTAGCAAAAAGCACAAAAAGTTTGCATTCTGCACCTCCAGGCCATTCGTTCCTCTCTGCTTTTCCTCCCTCCCACTGCTGGTCCCGAATCTCCGGAGGCCCCGGGACCAACTGATA-------AGATAGGGGAGGACAGCCCTGGAACCACTGGGGTCAGCGGGTTTGGCCATAAAGATGCCC-GGTGATTACGCTTGTGTCCGGCTCGCCTTACCTGGAGTTCAGCTATCAGCTCCTCCTTGCTCAAGTTCTGCTTCTCCACCACCTGCAGCCCTCCATCTTGCAGGATCTTCCGGCAGCAGGGGTCCAGGCTGTCACTGATGAGTACTTTGCGCAGATTTGCGAAGGCCATTGCTAGAGTCAGGCCTTAGAATCAGTTGCTGTGGGTGGGCAGAAGCACTTAGTTCAGGAAACTGCAAGCAG----GGCTGGCTCCGGTGACTGGGCAGGGTTCTCGATCTCCCGCTCCCCCTTTATCCTCCCCCTCCTCGCGCCAACAGTCTCCTTTTGATTGGTCAGAAATGCTTAAACTCTGCTGACT--CCGCCTCCCCGGG---CAGAGCC------TCCCACACatttttttttttttttttaaatCCTACACAGA-----CTACACTTCCAGCAGTGAAGCCCTTACCTGCCCCGGGTGAGCTTTAACACGCACGATTTATGCCAGCAGGCTGATTTATATTGGAAATAAACAGAAATACGCTGTCTCCACGAGGGAATTAAATCTCATAGTAACTTCTTTCCTCTTAAAGAC
s HiC_scaffold_1 108167392 1332 - 233722169 CTTTTCTAGTAAGGTAACGACTAGAAGTACATTAATTATAGATAATGATTGGAGATACGTCCCTAAGATTTGGTA-AGGTCAGAAAATCTCCTGGCAGCATGGGGCAGAACATTCTGGTGTAG--ACGTCCCTCCAGATCTAAGGCGAGGTCAAAGGTGTAGG-----------------CAGCGTGGGCGGCCCGAGGAGCtcgctgcacccccag----ccctgctccct---aGTGCTCCCCGGAGGCGGAGGGGCGGTGAAAGCTCGCCGCAGTCTTGCATCAGACGTAAGGCGGTGCGTTTCTGCTGAGCCAGTAGGGCCGTCTTTGCCCTGCGTCTTGCCCACA---GCCACGAGACCCGCTGGGACTCCGCCAGAGAGCCCCGGCAGGAAAAAAACTTGAGGCCCAGAGGAGTGGCCGGTTTCTGGTTCCCAGCGCTGAGGCCACTCTGGCACCCCTCCCCCACGTCCAACGCGGGGGCGGGCAAGGGGGGGGGTTGGTAAGGGGCCTGGCACCACGGCCAACCGTGGGCTCG---------------------AAAGCGCAGAAG-----CTGGCATCC--------CCTGGgcagccctgcagggcctgttagAGCAGGACCCGGGCTAGCGGGAGCCCAGCCAGCGTGGAACACGCGGCTGCAAACTGCTCAGAAAGTTTGCATCCTGCAGCTCGCAGCCGTttgttcctcccc-tttctcctccctccccccgCTAGTCCCCAATCTCTAGAGGCCCAGGTGCCGACTGATAcaggaggagagaggggaagggtGCGCTGGCTCCGGAGCAGCCAGCAGGTTTGGG-AGGAAGATGCCCCGAAGACCTCGTTT-TCTCCTGCTTCTTTTACCTGCAGCTCTCTTATCAGCTCCTCTTTGCTCAGGTTCTGCTTTTCCACCACCTGCAGCCCTCCATCTTGCAGGATCTTTCGACAGCAGGGGTCCAGGCTGTCACTGATGAGCACTTTTCGCAGATTTGTGAAGGCCATCGCTGGATTT-GGACTCCGAGGCTGCCGCTCGCGGTGGACAGAAGCCCTTATACCAAGAAGCTGCAGTTCGCACTGGCTGGCTCGAGTAACTGGGCTGGATTCTCTGTCTCCCGCTCCCCTTTTCGTCTCCCCCTTCT-GCTCCTAGCGACTCCTTTTGATTGGACGAAAATGCTCAAACTCTG-TGACTCCCCGCCTCCTCAAGGTTTTGAGCCCTCAAACCCCGCCCACTTTATTCTCT--------GACCCGCGAAGAATTTCTTAAACTCATGG----GAAGCTCT----TGCACCTGGTGAGCATTTAAAAACACCACTGGC--------GCTGATtcatatctgaa--------aaat-ctctctcacCGTAAAAG----AAGTTTCATTGTCACTTCTTTCTTCCCAaaggc

a score=12017
s chr3            98377090 522 + 160039680 TCCTGGCCTCTGCCAGGGGCAAGCAGAAATAATTGTCTGTTGGTGAGGAGGACTAAGGGGTTGGCTTTTTGAAGTAGGACCATGTCCTAGT-GATAGCTCTTTTAATTAGAGTAACTTGCTTCAGCGACATCAACTAGGTCTAATTATTAATAGCACTCCCCTCCTTCAGACTTGGAGTTGCCCTA-TTTACATGACAAAC--TGTGGTTATCCTACTTAAAAGGGGCTTAGCTCCTCTTCTCCTTAAACACCAATGGCATGGATGGCACGGATGGCATGGATATCATGCAGGAGGAAGTTGATCCAGGAAGT-------CTTTC--CTGGATCACTTTCCTATCTTTCCTGCCACCTTGCTGGGGA-AGAGAATGTCTGCTTTCCAGCCTGGCTTCGATCGATGTGTTTGTCAGTCCCTCTTAGGTGTTCCTGGGCCATGGGTAGGAAGAGCACCTTGGAGCCTGTCTGTCACACCTTCCTCACTGCTAATACTGCAGC----------CAGCCTCACACAACTCTCTTTTGATTTTCTGAAAaa
s HiC_scaffold_1 108249807 509 - 233722169 TCCTGGTCTCTGCCAGGGGCAATATGAAGTAATTAATTGGGGGTAAGAGAGACTAATGAATTGACTTCTTGATGCAAG-TTGTGTCCTAGTGGATAGGTGTTTTAATTAGGGTGACCTAAATTAGAGCTGTCatctaaatgtaattattattagCA---CCTCTATTCACTCTCAAAATTGTCCCATTTTAGATGATACCTTATATGATCACCCTATTTAAAATGGGGTTAATTCTTCCCTTCCTCAGACAAGGATGGTATA--------------------------GCAGGAGGAA---AATCTAGGAGATGGTGCTGCTATCATCAGTTTTACCTTCATATATTTCCTGTCACTGTACAAAGGAcagaaaattcaatttttctAACCTGGTATGGAGCAAT---TTTGATGTCTTATCATTTGAGTTTCCTGACTACAAGCAGAAAGGGCACATTTTAGCCACgctatcatttcttcctttctgcttcta-tgTAGTCCAGTTTCAACATCATCATGCCTCTTTCTGTACAtcttttataaaa

a score=38934
s chr3            98382326 2156 + 160039680 CTCCTCCAGTCCTGGGGTCTGAGTAGAGCCCCCGTTGTTGCTGCGGTGGCAGGAAGTCTCGGTGAACTACAAATCGAGGCATGCTGGGAACATT-CCCTGCTCCTCCCAGGAAATGTCCTTTGTCCAGCCCCACAGGAAGCCCCAGCGAGGAGGTAGTGGGCAGCCAGCCCGAGTGCCAGCCCGCGGTTGC---------------------ATAGCCTCAGCACCG-----------------------------GGCGCCAGGCTTGGG-CAGTGCGCTCAGAGC--------------TGCCCGGCGCATCACAGGTAGGAGCGCTGCTGCGGCTGGGCGCG-CCGGCTTCGCGGATAGGGA--GCTGGGAACCTGAGCTGATCATCTAGGGGCTGGGATGTGTG-CTGTGGCTG--AGCTGCCGCGCGAAGCTGTCCT------TCGCACACTGGACTGTGGTCCGCCACCCCGTGGGCTCAGGAACCAAGGACAGAAGGGGACCCTTCGTG-TCCTATAGCTGGGT-TGAGCTCCCTTTGGTCTCTGTGGCGAGGGGAGGGGAGGAGGAGGCT-----------------GAGACTGCGCTGCCAGAGCAAGTCGGACCGTCCCACAGACCACCGAAGGGGGCATCAGAGACCCTGGG--AGACCAAGCCCAGGGAGGAGCTTGCAAGACAAGCAGAAGGTGAAAGGCTTTGTGTGCATCGGTGCATCAGCTTAGATCGTGCT-CCCTTTGCCTACTAAGTCAGTGCCCCCAGCCCCACTGTGAGGAAGGGGATGAAGGCGGGGACTTTGCGAA--GGTCAGCAGGTTCATTTTGG-CCCTTGTGAAACGTG-----TCTGTTACCTGCTCCTCCCATCTGTCTGACCGATTCGGATTGCCACCTGGGGGCTGCGATCGGACTGGGAGAAA-GGTAC-AATGAGGACCTGCGAAAGGAAGGCTGAGCTAGCCAGCCGCGCGT--GGCTCAGGAGGGGTCGTTGTCTGGTTTTGCTAGAATCCCCAACCACAAATATCCACGTTGGCTGATCATGGGCAGGTGGTGGACAGAGCTGGAGCCTGCGGCCAGAGAGCTTATTGAGGCTCAGGTGGCCTGGGGTGAGGCATATGTTA-GCATGAGGGATGGTGAAGAGGAACAGTGAGACAGAGACCCT-----------------GGATGTACCTTACAGCCAGAGCACACAATAG-CAGGTCTCTAGAACGGGACTTTAAGACTTCCTCTGGGACTTCCTCTGATTTAACCTTTATTTTCTTAACCACGCCCCCATCCCCCCCCCGCAGTGAATCAGCCAC-CCCCCACATGAGTATGAGGCATAATTTAATTTAGTGCTGTAATCCTGCCTGTTGAGTCAGGC-----------TCCGTTGGCTG----------TCAGCATTCCCATATA-----GTGGGTCTCTTCCCAAGAGACCG-TTGTGGTAAATGTGGCAATAGCTAGCGAGTTGGTGGTCTTTGTGAGCTGCTATGGACAAATGGGCAAGTTTAAACACAACCGGAGTGTGACTCCCATAAGGGAATTAATTCACCT-GCCTCTGATGCCT-----------TTCTGATCTTCTATGTGTATACAAGTGTGCATCCCTTCTCTTAAGGAAACATATGGTGATTACTTAATGTATAATGTACTTTAAAACCAAAGGAATTCCTCTTGAGT------------AGTAGGCGGATTATTTCAGGT----------GCACGGGGGGGAAAAGGATGCTTTGGACCCTGGATTAATGGCTTGTAGGGGGTGGAAGGCTTTTCACTG------GCACTGTTAGATAAGACATGTG--AACTAAGTTGGAATGAACTAACTGGAATTGTACAGGCAGCCAATGTTA----GATAAAATGAAGAAAGAG----TGTCTGCATCGGAAAAAGTTCCCGGTTGTA-CACACTGGCTGTGCTTGGAGGAGGTAGGATCTTTAG----------------------------------------------------------------------------------------------------------------------GGGAGAAATTGA---CAGTCCAAGAGACAATGACCTGAGATT-----GAACCAAGACCATACAGTGAAAGTCAAGCTGCCTTCCAGGTCACTCAGGAGAAAAAAAAAAAAACATGATGGCATTCAAAACCTACTGGAATTAAGGAGTGAGTGACAAGAAGTCAGAAAACTCAAAGGGCGCAGCTAAATTGAAGGGA--CCGGGTGACCTCACTGGAGGCTGTATGTCTGAGGCTGATAGATTTGCATAGCATTTCCCTCTCCTCCTGCCAAGAGCTCTTTGGATTTCTCCAGAATCTACTTACTCGACTGCCTAATTTTTAGTGTCCTGGGAAAGGAAGGAGAACTTGTGGAAGTTGGTTTCAAGGAGGACA
s HiC_scaffold_1 108255106 2390 - 233722169 CTGCCCCAGTACCCGTGTCCTAGCCTGGCCGCGGCTACTGCTGTGGTGGCAGGAAGTCCCCGCGAACTACAAATAGAGGCATGCTGGGAACATTTCCCTGCTCCTCCCAGGAAATGTCCTTTGTCCAGCCCTACAGGAAGCCCCAGTGAGGAGTCAGCGGGCAGCCAGCCAGTCGGCCAG--CGCGTCTGCCAGCGAGCCAGGCAGCCAGCGGCAGCTGCAGCGCCGCCACCGCAGCACAAGGGCAGACGCGCCGCGGTGCGGGGCCCGGGCCAGGGCGCGCGGTGCCCTGACTGCTCCCGCGCCTGCCTCACCGCAGGTAGGAGCGCGGCTGTGGCTGGGCTCGTCCACCGCCGAGGGCTGGGGCTGCGAGGGAGCTGACCTGGCCACTGCAGGGACGCGGTGTGTGCCCGAGAGTGCTGGCTGCACCGCTGGGTTGCCTTGGCGCGGCGTAGACTGCACCGTTGTCTGCCACCCTGCGGGTTCAGGGTCCCTGGGCGTTTGAGGTGCTCTCGCGCTCCTAGGGTGAGATCTGAGGTCCCTCAGGGTTCCTTGGCAAGGGGcggaaaggaggaggaggtgcaGATTTGAGGGAAGAGACGGCGTTGCTGGAGGGAG-CGGATCGTCCCACCGCCCACCGAAGAGGGCATCGGAAACCCTCGGCCAAACCAAG-CTGGGGAGGAGCTTGCGAGGCG---AGAAGGTGAAGGGCTTTGTGTGCCGCTGTGGACCTG-GCGCACTGCGCTCCCCTTTTTCTTCTCTACCCGCGCCGCTAGCTCCACTGGGGACAAGAAG-TGGGCGTGGGGACTACCCAGAGGGGGCAGCGGGTTATCTTAGGTCCTTTGTGAAATgcgtttcttttttttctttctccccttcccttttttGCC-----------CCGTTTTGAGGCTTCGATCAGACGGGGGCAACTGGTACAAATAAGCACGGGACGGAGCGGGGTGGA-------AGCAGCGCGGCAAACCAAGAAAGGGTCGCCATGCTACTTCTGGAGGGCGCACAGCC-CAGACGTACACCCCAGCCAGTAGCAGCC---TGGCGGGCAGTGCTAACGCTTGCACCTAGAAGGCTTGCTGAGCTTGAGGT--CCTGAGG-GAGGTACAGGTGAGGCGCAGAGGGAGACGAGGGCGAAT-GAGAGACTGAGGGGCTCCAATGAAACGGGTGCAGGATATAGTTTATGGCCAGTATTCATAATGGTCAGGCCTTGAGAGCTGGA--TAAATGCTTAGTCTGAGACTTTCCACAGTT-----TCTGTCTTCTTAGGTGC--------CCGCCACGCATAGTGAACCCACCACTCCTCTAGGCGAGCTCTAGACTGGCTTCAATTTGGTGATATATCCGCCCCCGGTAA---AGGCCTTATTCCTCTCCTGTGGGATGACTAGAGGCCTCCACATTTCC-TATGGCTGTGTGACCTTTCTTCCATGAAACTGAGTGCGCTGGAT-----AATGGCAAGCGAGTTAATGATCTTTAAGAGGTGTGAAGGATGAGAGAGAAGCCTTGAGCACAG--GAAAGGTGGGTGTAGTAA------CAACTCACCTGGCCTCGGGAGCCTGTGCATCTGCCTTCTGTGCTGCTGCTTGCCTCCCAGTGTT--TTCCTTCCCTTAATACAACATACGGCTGTTATTcaatgtgaaatatattttaggaggcaaagaaaccttttaaaatgtcacttgaACGAGGAGGCAGAAGTATCCAAACCTCCTAATAGGAATGGAGAAGAGAGGGGAG-TGGgggcagaggaggagagg------ggaggagaggagatttTGACTGGATGATGTAGGGAGAAACAGGACATTTGCCATCAGATCTGAAGTAA---GAACGGAGTTGTCCAGGCAGAGGGTGTGAGGACGGTGAAGAGAGGGAAGGGGCCCTGTGTATGTCGG--------CTCGCTTGGACCATATTGGCCGACTGTGTTGGAGGTGGAATTTTttgtctttccctctctctctcctctttttctttgttcttgtctttcttctctttctttcctttcttccttctttcattcatttgttccctcattcatttgttctttcttggTATGTTTGACACCAGAAGTTAAGTCTGATCCTAGAGAAGGTAAAATGGGACTGCGTGGCACCAAGGTC--ACAATTGGAAACAGGCTATTCTGTAtgtaatgcaaatgaaaacataa--------atggcCTTCAAAAGTTACCAAGATTAAGTGGTAAGTGGGTACAAATCAGGAAACCCAGTGGGGAGAACTGGGTTGAAGTGAAGAAAGATGACCTCACTGAAGGCTGAATGACTAAAGCTAACGGATTTGGATCCAGGTTC---CTCCCCCTACCCCATGCCCTTTACATTTCCTCAAAATCTCCATGTT----TGCCTAATTTCTGTGATTCAGGGAAGGGAAACAGAAAGGGCAAAGACTGATTACAAAGATGATA

a score=7617
s chr3            98393318 933 + 160039680 AAACTTGTATTTCCATCTTCCTACTTCCCAATAGGCACTTGGGTTTATTGATTGAGTTGGTGGTTTGTTGGCTATTTCTGGTAACCACTTCCTATGC--CCTGTAATCATTTCACATTTCTTTAAGAGTGTGTGGTTGATGCCTGACCACCACTACCATCAACATCGGTGAGATTCAGAACCTCTATATCACTGCAGTGCAGGCACCTCTGGCATTAGAACATAACTCTAGACCCTTAGGAAAGGGATTTTCGTGGTTGACGATTTGACACAA--GAAATTAGG-AGATCTATACCTTTCTAATTGTAGTAAGGAAAGCAAAAC------ACCTATCA----------GAGAATC------------ACTTCCCTTCACATAGACACTCTTAACACTACATGCAGGTGCTTCTTGGTGTTTGCATG-GTGCCTTCCCTCCTCCTCGTCCAGCATCTTCTTTACTCTCATTACTATCCTAGAAAAGTTGAGTTTTGATCTTTTCTGGTCCATTTTCAGATTTCTGCTATTGTTTGTCCTATCCGTCATCAGTGAGAGAGAAGCAGCTGACTGAGAGGGCTGGGGAACTGGGGTGCTTTCCATGAGGGGCACCAACACACTGGATGGCTTTCATTTTCCTTTCTTTCTCTTCTATTTCTATCtccttccttccttccttccttccttccttccttccttccttccttccttccttcctcccttcctcctttgcttccttctttccttGTTTTTCCCCTTTAGCACAGGG-----------GGAATAGAGGAAGTATCTATGCTGGGCCATCTGATATAAGCAGGAGGTGATGATTCTCGACTAAGTGGCATAGACTTCCTTTCTGAGACAATTCTGTC-AGTGTCTGAAGTTAACTACCA--TTCTGTCATGACTGCCTCCATAGTG-GGTAGTTGGGTGTGCTTGGCTCCTGATGCTAATAGGTTATTGGATCTGGTTGAGAG
s HiC_scaffold_1 108263869 695 - 233722169 AAGCCTTTATGACTGTTTTCCACCTCCCTAATTGGTATGTGTGTTTATTGATTGAATTAGTGGTTTGCTAGATATTTATGGTCACC-CTTTCTATGTGGCATATAATCTTTACAAACTT-TATAAGAGCCTATATTTG----------------------------------------------------------------------------------CTTAATTTTCTACCCTTAGGAAAGAGTTTTTTA-GGCTGATGATTGTatataaatgagataaaataaattagTGCCTTTCTGGttatagtaagaaaaataaagcaaaacaaactaacaaactaGCCTTGAAAATTTCCAGGTAATAAACCTGAGTTCAAATAGACATTCTCCacattaaatacaaaattttccT-GTGTTTGAGTATGTTCCCTGCCTTCACCCCTCCCACCAATTTCTTG--TCTCCTGGTGACTTTGAAATGGTTGAGTG----------------------------------------------------------------------ACCTGGTAGAGTAGG--GGAGTATAGGAGCATTTTCCAC------CGCAAACACA-------GCTCTGA-----------------------------------------------------------------------------------------GCCACCTGCACAGCC-----------------------GAAGCAGGGTTTAGAGGCTTAGGGTGGAGGAAGGTCTCACATAGGGTCATTTTATA-AAACATGAGGTGCTGATATTTAACCCAGGGCCacaga-tttattttggagaatattctGTCTAACTTCTGAAGCTAACTGCCACTTTCTGTCATGGCTGCCTCTTGAGCACGATCGTTAAGTGTGCTTGCTTCCTGATGCCGAGAAGTTATCAGATCCAGTTAGGAG

a score=28646
s chr3            98403810 2229 + 160039680 ACAACTGAAATTTTAATAGGCCAT---------GATAAAATTTCCATCTTAACTTTCATCA-----------------------CTTCTAACTCCACCATA-TCCCGTATTTATTTATTGCCCCT--------CAACCTGTCACTTATTAACGGAGCAATGCACC-CTTATCATCTCGGAAATACTT-----CGGGGAACAGCTAT----GTTAtgtgtc---ccctcgttagta---tataaactcttctgtgtcaaaggctttggcattcttatttctatattcctgagatcagtataagcactgacatcagtgtttagcaaataataacttaaggcaataaataagtactcactgaacgaatgaTAGACACCAAAAAACATT-TGGTTTGTGGATGAGG----AAAAACAAGGCTCTG----GCATTGCCTCTGACAGACATTCTGACACAGGTG-GTCTCATGTCATTACTCTTACAGGTTGGCACATTGGAAAACTGAATGGTCATGATTCGAGCCTTGGGTCAGGAGAGGAGGAGGTCACATAGTGTAGCTTGAGTGAC--GAAGTGGAGCTGACTGACTGAATACACTTGGGGTGAGGCAGCCC-CAGCA-ACCAATGAGATCAGTTGTAAGATGTAGCTCTCTA-GACTGATGCTACCCCCTCTGTACTCATAGGCACCCCTTTGCATTCATGGGCACCCCCCTCTGCACTCATGGGCACCCCCTCTGTACTCATGGGCACCCCCCTCTGAACTCATAGGCACCCACTCTGTACTCATAGGCACCCCCTCTGTACTCATGGGCATGCTTTCTTTCAGTCTGGCATGAGGGAGACT----GTCTC---AGAGATGAGGAGAGGTTGGGAGCGTAGCAGTTTTGGGTGTTTTCCTCTCATGAGGCAGACTC------CTACTCCGGCTTTGGCCTACAGCCTCTTTCCATCTGTGCCAAGGATAGAGC-AGGCTTGGCTGTATCTAAA---AGCCAAAAATAAACCCTGGCGCCAACATTGTCTGTGAGGGGCAGGTGTCTTGG--AAGTACTGTTCGACTTCTGAGAGCAACGAATCCTCTATTAGACCTTT-TCAAGAGAGGGTTGGGCCCAGGTGGTAGCCGGGAAGGTTGCTTTCCTGTCGTGGGTCCTTGAAGTCATCCCAGCCGAAC----CATCCTCACCCTCAA-------ACACGGCACATCCCTATCGTGGCTTTCCTGGGTTTCTTCACCATCTCCTGCCCAGTAAAGATTCCCAGGACCACCACCTTTTGACTCAAGGATTCCAAAGTTTTTCAAAATACATAACACAGAGCAACTGCTGTACCTGGGAACAGGCAGTGGG---ATTTTGAGGCCCTAGGG-CAAGGTTCCTATTCCTAT-TGCTTAAGCCCCTGCCACTGTGCCTCCGTGCTCCTGTAGGTGCCTGTCTA-GAAACAAATAGATGGA--AAACTCCTTCTACCTCTTTTGTTCATTTTTCAATCAAAAGGAAGTTGGTATGGGTGACTGTGTTCA-----------------------------------------------------------------------------------------------------CAGCCCTC--------TTTTGCAGCATCGAAATTGTTCAAATGTATTCTCCCATAAACTCATATATAGAGCCCCTGAAGCCAAGCAGAAATGGTTGAATTA-GAGGCAGAGAGGAGTATGTGGATGAGCCTCACCCACTCTGTTTCATCTTGGTCTCTCCCCTGGGAGCCTGCATGAGTTATAA--CAATCTGTCATGGCTT-----GGAGCGGTGTGAGGCCCACAGAGCCCTGGCAGGATGAAACA--------------------------------------------------------TTATTGAACTT-------AAGAGGGGGAGGCCAAGGTGAGCATCCAAGCCTG-----------------------------------CGTTTACCTACATGTGAGTGGCTGAGTGACCGAGTGGCTGAGGTT--------------------------TATATCAGATCACCTCAGCTGAG---------------------GACCTTCAGGACCATAAACTAAGGCAAAGCTGGAGACCGTGAGCAGTTTGACTTGGCCTAAAAAAAGACCTAAATATTTTCATTGTGAGAGTCTGTTGTTGACTGCAGTAGGGAGAACCATAAAGGAGGAAG-ATAATGGATGCTT--GAAATACAGTCTAGGAAGCTTGGGCATGATCCAACAGGCCACAGGGAGCCACTGAAA---------------------TGCTTGCAAGAGCAGCCCAAAG------CGTCTCTGCTAACAGAGAATCTGCTCTAAAGAGTTGCGTGTCTGAACTGTTAAAACCTTTAGCAGGCACTCCATGCTG------------------CGTCCTGCA-----GGCTGCCTGTACATTCTGCCTAGTGCTTT-CGCACCCATC----------------TCTCACCATCCAGGATGAGTCCATCCACCAGCCTGATATCCCTGTGAGCCTCCTGAAACACAAACCTGGCGTGCCGTGGCACCTTCTCCTCCAACTCCCTCACTGGATTTT
s HiC_scaffold_1 106682899 2513 - 233722169 ataaatgaaatcccAATATATCACTGTTGTACAAACATATTTTGCATCCTACTGTCCATCATTTTAGATTTCAAGTGTTCAATTCTTCCAACTTCACCATggtttcatatttctttattgttCCTATCAACTCTAGCTTCTGCTTCATTAATAGA-TAACATATCTCATATTATCTC---AATGTTTACCTGTGAGGAACTACTGTTGTCATTATATGTTGCTTCCTCCCTAATGCAGTATAAATTCCACTGTGGGAAAGATTTCCTCTTGCTCAGTACACTGTCCCACAGTTTAG-------------ACCAGTGCCTCGTACATAGTAATTTAATGTACTAAATAAATATCTACTGAATGAATGATGGA----ATAGAGTAGTGCTATTCTTGAAAgatgttttagaaaatatgttcTTCATTTCACAGCCTTCAGTGTATCTTAAATCCCAGTAGTGTTTCA----ACAATGCTTGTAAGT-GGCATTTTGGAAAACTGCCTGCTCAGTGCATG---CTTAACTCTCAATTAAATGTTTCAACATGGTGTGTTCCTAG-GACTAGAAGTAGAAGTTAC--AATGAG-------GAGATGAGGTAAATCACAGCTTGCCAACTAGATGTGGT-TAAATTGGGGTGCTCTACTACTGA-------CAATCagtaaagacaaaaaacaatGTAAGTT--------------------------GTCACCACCCCTGCAA------------------------AAAAGCAGCC---------------GCACGCC--------------------TCTTTTTTGGCCAAGCAGGAGAAAGGCTTCCGGTCTTTGTAGAGATTTGTCAGAGAAGGGAACATGGCAGTTCTAGCTGTTTCCATCTGATAAGGAAAACTCTAAGGACTGATTCTGCTTCGGT-TATTGCCTTTTTAAATCATTGCCGAGGGTAGAGTTGGGGTAGGTGGCAGCGAAACTTGGCTAAAAATAAATCCTGAAACAGACATTGTGTGTCAGGAACAGGTGCTGTAGTGGAGTACAGTTTGACTTCTGAAAACAAGCAGTACCATATAGGACCTTTGTAAAGTGAGACTGAGCCCCTGGTAGCAGCCATAAAGGTTATTTCTTTGTCACAGACCCTGAAAGGAAGGCTATCCAAACTTTTCATCCTAATTCCTAACATCACCATATAATACAGCTCCATTATAAATGTACTGGGTTGCTTGACCACTTCTTGCCTAATATAGATTCAGAAAACCACCCCCTTCTGACTCAAGGATTACAgagtttctcaaaataaattgCATCCAACAACTGTTATACCCAGAAACAGACAGAGTGGAAATTCCAAGACCCCGGGGATGAGGTTCCTATTCCTTCATGCTTAAGCCCC--------TGTTTCTATGCTCCTGTAGACACCTGACCAGGAAGCAAATGGAAAGAGCAAA-----TCTAAATCTGTTCTCCACTTTGC-ATGAAAAATAAGTTGGTCTAGGTTAGTATATtcaacaccttttttttttttctcactattttcttttcagtactgggaaccGAACTCAGGGTCTCCcgcttgtcaggcagatgctgcactgctgagctacatcatcGGTCCTCAAAACCTTTTTCGTAGCAGGGAAACACTTCAAATATGATTTTCTATAAGTGCATATATAGAACTGGCCAAATTGGGTAGTCCTGACTGAATTGTAAAGCAGAAAAAAGTATGTGGCTGAACCTCACCCACTTT-TTCTAGCTTGGCCTCGCTCCTGTGTGCCTAGGTGGGCAAGAATCTCTTCTTTTATATCTCAGTGAAGAGCAATGTGAGCCCCAGAGAGCCC-AGTAGGATGAGACACACTAAACAGAATGAGGACTTGGAACTAAATTGCACATCGGTCTTGTCTccccattttatataatttttaaaccaaGGGGACAGTGTCAAAGTAGTCATTCAAGTATAGACAGTCAAGTCAAGTCAAAtcaagtctgtctgtctgtttctctctctttctccatctctttccccttgtctctgtctttccttctttctctctctagggAGGAGACATGTCAAGTTGTCTCAGCTGAGAGGTAAGAACAAAAGGGAAGAGGCATTCAGAGCCAGGAATCCAGGCAGGGCCAGAAACCTTGAGCACTTCAGACTgg-ttaaaacaacaaaatgatatttttagtACTAGCATTTGTAGATGA---CAATGGAGA-AGTCATGTATCAGCATGTATCAGTCATGTATCAGAAAGTCAGTATGGGAAGCCTGGATGTGATACAATAGGCAATAATGAAACACTACAACTTTATGAGCATGGTAATATCTCCTTGAAAGA-CTGCCTAAAGGAATAATATCTGTGCTCACAAAAA--CCAACTTAAAGAGGCACATAACtcgattttaaaaacttttaattggAGATTCATCCTTTCCTTTTGTCATCTCTGCCCTCCTCTATGTGTGGACGCTTGAACCTTTTGCCTAGACCTTTATCCAGCCATCCTCATGGCTTCCTCTTTCCCATCTTTCAACAGGAGTCCATCT-CCACTCTGAAGCCCTTGTGATGTTCCTG-CGCACACACCTGGAGTATCATAGCTCTTCTTCCTTCAGCTTCTTCAGTGGATCCT

a score=17933
s chr3            98406797 723 + 160039680 TTTTCTCCCCCTCTTCAGAGCCTTCCCTTTC---TCTGAGCCGATGCGGAAGACCTAC--ATTTTTAAAATGACAATGCAGTTCTAATCTCATACCCCTTCCAAAATGCTCTTTGGGACTTCCCAATGAAACTGTCTCCTGAGGCAACACATTTGCATGTGATGTATCTCCTCTGGTGCTTATCTGGCTGCCTACTATACAAGCTATTTATAAACGCCTGCTTCTCCCAGCATGCTGCGTGCTCACAGAAAGCAAACACAGAATTAACAAAATAAGAACTTGATGAATTTCCCACACTTGTTAGCTGAGTTTATGGAACTTTTTTCTTAAATGATTCTACAAATGTTCAAAAACCACGAACAACTGCCATGAGGCCAGGGTGTGCTGGTCTCTCTTTCAAGTTC--CACACAATGCCCCCAC-----ACTCTATTAAGGGAGGTCAGCACTAGATAAGAAACGCCCCCCAAGACA---------------------CCCCTCCCAGT----------CCAGCGG--CCAGGCTGGCAGTTTGAAGAAAGGCCTGGTGTGTCAACATTAAAACACCAGGACTTTATCCACCATGACCGACACTGCACCCTTTACTGCTG--------CTCTGGCCCTGGTATAGGAGGCT--GAAGCTGCTTAGCCTGTGAAGACTTCGGAGAA--AAAGGCATTTTACCATGGAAGCAA------GTCCA-----AAGAGCAGCTATCCGCAATCACTGATTGAGCAATGCTATA-GCCAGCCTCTGGGCTAAGGACTGTGA
s HiC_scaffold_1 106685554 769 - 233722169 tcctctccttctcttcag--CCTACTTTATCCTATCAGCGCCTTCCCTgaaaactttcttatttttaagccCAGACTG------TAATTTCATACCCTTTG-AAAATGCTCTGAAAATCCTCCAACTTGAAA-GTCTCTCAAGGCATCATATTTGTATGCAGTCTATCTGCTCTAGCACTTATCTTTTGGCCTGGTGTc--agttatttataaatgtttgtttctCTTATTATATTTTGTGCTCTTGGAAAGTAAAAACAGAGCCAACAAAATAAATACTTGATGAGCTTCTTGTATTTGCTAGTAGAGTTTGTGAAACCATTTT-TGGAATAGCTCTGTACATATTCAAAAAGTAAGCACAGCCAGACTGAGCCCACAGTATGCTGAT---TTTTTCTAGGCCCACACACAATTTCTCCTCCTTGTACTATGCTAGGTGAGTTCAAC-CTATGTGAGAAATGCCACCCTGAACAGGTCAAACACTGCAATTGGCCGCCAGCCCAGTATTGTGTCTACCAGTGGACCCAGGCTGGCAATTTGGGGAAAAGTATG--GCATCAGTATCAAAATACCAGGA-TTCATCCACCACAG--GGGGTTAGATCCTTTATTCCTATTCTAGATCTCTAGATCTATCATTGGAGGCTCACAGGATGCTTAGTTTGTCAGGACTTTGTAGGAATACAGGCAGTTAGCAATGGAGGAAAAAGATGATTTAAGAGGAAAAGAAGC-ATCTGATGTAATTTATTGAGTATGCTTATGTGCTAATCTCTAAGCCAAAGACTATGA

a score=13814
s chr3            98410745 582 + 160039680 TGTGTGCTACTTGTGAATACCAGGCCT-AGCCAGCCCTGGACACAGCAGT-CAGTGACAGTACCACAAGCCCTCCTCCCTCTCCCACACCTCCTCCCTCAGCTGCTTCTCCAGGAGGCCACGCAACGCAACAACGTGGGATCTTTTGCCAGGATGCTCAATGAACAGGAAA----------------GTGGGAGGGGCC-ACAGCAGTTGCCTG-TCACCTTCACCACAGCTGAGGCTGTGCCCCCATCTAGTCGCACTCTGGCAGCAGCTGCCACAGCAACCACACCCTCAGCCCAAGTTCCAAGAGTCAAGTGGCTGTCCCCAGTG--GCCCTGTGT---GTTGACAGAGTTGAAACAGATGGAAAATGACTCAATAGAAAATTGACTGAGTCAGAACCTCAAGACCGTGCCTCTCTCCGGGCCGGCCCGTTCCATTTCTGCGTCTGTGGATTACCAAATCTGGGTTCTAGCTGTGTGTTGGATTCAGGGAAGAATGAAACGAACTTAGGAA--GATAGTATCGTGGCAGTTCTTC----AGGCACTGTGTGTG--------GCAGACAGACAGATAAGCCCAGGAAGTCACAGGTCCATATCACATGGATTCCggggt
s HiC_scaffold_1 106687294 581 - 233722169 TGTGTGTTAGCTGTGGGTATGGTGCCTGAGCTAGCTCCAGACATGGCAGTACAGGGGACAAGACACACTTTCTCCCCACCACcccatttcattttcctcatct---cCTCCAAGCAGTCAT----------AATGTGAGATCTTGTGTTAGTCAGCTCAGTGAGTAGGGAAAAGTCAGGCTAGGGAAGTGGATGGTGCCTATGGTAATCTCCTTCTCACCGCAACTACAGTTGAGACTGTGCCCCT-TCCAGTTATACTCTGACAGCAGCTGCTGCAGTAATCACACCCTCAGCTTAGTTTCCAGGAATCAAATGACTGTGCCCAGTAGTGCCCCATGGCAAGAGGATGGATCTGAAACA-CCAAAAAATGGCTCAATAGAAAATTCACTGAGTCAAAAT-----AACTCTGCGGCCCACAGCCCTACCCTCTTCTGCTTCTTTATCTATAGATTATCCAGTCAG----TCACCTGCA----------AGGGAAGGATG---CCAACATGTGCAGTGATAATGTCCTGATGGTTCTTTGGAAAGGATCTCCATGTACATGCTTTGCAAATAG--AGGTGAGCTTA-GAAGTCACAGGTTGATGTTACACAGTTTATGAGGT

a score=20411
s chr3            98411708 1679 + 160039680 ATTACACAAAAGACTTAGGGTTATTCAGTGTTGGCCATAATGTTTCTTTAAGTCAATGCTAATACAAACAAC----TTTAAAAAGTCAACAAGATGTTTTGT--TTTTTGAGTGAAAACTATAGACAATCCAAAACCTGGTTTCTTGGAATCCATCTTAGAGAATCAGATGAAACTTTTAAG-ATGATTTTTTAGTTTTGAAGAGGCAAGCTAATCATAATTATAATAGGAATGTAACAGTAGAAGTTGGCTGAAGTGTGGAAGAGAACA---GAAATAGGAAGAAGGAAGGTGTTGCCCACAAAGCTTGGTTACTGTAGCTAGAGCAGCAAGC-CATGGAGAtgacagagggggt-----------cagatgcagaagagaatgta----aaagaaccaggtgactctggaatggctgtctcagtgctctgcgcactcactacctttgtgtggtcaaat---aacttatatatttgttgggcctcatt-ttcctccatgggaaataatgtttctctgactctatctcTCTGTCTCTCTGTCTCTGTCTCTTAAGCATTTAAAACGTGGC-AGACTTTCTCATTAAC---AAGTATAGTCTCTTCAGCAAAATGTCACTGTAGTCCCCGACCTTTGCCACCCAGCTTACTTCTTTGGAGCCTCCCAGATAGGGAGAGTGACACTATTAAAACAGAAGCAAAGAGATACTGTGAATCCGAATCTGAGGAACTGTCCATTGTAGACTAGATGATCTGGATTCTTGATCTAGATGCATCTTCTAGTTTATGGTCTCATGTCTTGGAGGGTTTTGTGTCATTCTTATAAGCCCCCTCTAggagatggagagactgttcagttaagagctttacttacagttcttgtagaagactcagtagggttcccatgcctgccagcattggatgacttacagctgcctgtaactttagctttagggaatccaccttctttctctggattctgtgggtccctgtacatgccgcacacagacacacatgtatataattaaagaataaTACAAGCAAATATTAAAGTAAGAATCTCCCTCTTGAC--CATGTATTCC-AGGATCTCATTTGCAGGTAG---------------------ACGATTT--TAGGAATGGGTTGGTGACTTTGGCAAGGCTTTAAATCTTTTTTCCTATGACAGGGATGGAGGAT------------CCT----TGTACTGGGCAGATTATGAGTTGATTAATGTGATTTGACTCACTGTCCTATCAAGCAGCTAACAGAAGCTACAAATACCAGGGCCAAATATGTAAATTGGGTATATCCCAGAAAGGTAGTATATTAGAGTCTTAGGGAACAGCTTTCT--TCTCCTAGGGCACCTGTCACACCATGCAA-----TAGGAAATGAGAAGCAGGCACATTAGTG-TGCTGAAAGGTACAGATTGCTAGTATG-ATTAGCCAAGTA-CACTGGCTACCTGGGGTGGGGGGCGCAAGTGTGATTGGAGCAAAAGTTGGTATGGCAGGGATTTAGGCTCCTGCCAGCCACTCAGTTATGCGTTTGTGGACAAT--GTTTGGGCTGTCTACACTTCCTTAACCCTTTCTGTA--------TCCCAGTTGAAG---------------------------------------------------------------CTGCTGATATATTTGTC--TGTTATCTCCTGGATTTAGATTAGTTGCTATTATTTT---------------CAACCAGCTATCTTA--GCAAACAATGCTAAAAT------GGTTTCCCCTTTTCTCCAAACTGCTGTGGCCCATTTCTGAAGTATTTTAACGATGA
s HiC_scaffold_1 108266777 1577 - 233722169 acTATACAAAGAACACAGAGTTATTTAATGTTTACTATGATACTTTATTAAGTCAGTGCTAATTCAAACAGCAGCTTTTTTCTAGCCGACGGAATATTCTGTGTTTTTCTAGTGAAAGCAgtagaaaatccaaaatgtgttaAATCAGAAACCATTTCAGGGGAATACATGAAAAGTTCAaacactgttttctgttttttagaggaaaaagtcattagaatcacagtagaaa----------aaaattagcagggacctgaaagagaacaaaagagataggaagaaggaagagagtaGCTGAGAAATACTGTTCCTAAAGTCAGGGCACCAAACGCATAAATAAGACTGAGAGGGTTGGGAGAGAATCTGAGGAATGGGAGATTGTACATAAAAGGACCCGGTAACCT--GAACGATAGTCCCCGTTCACCA---ACTCACTGTTTTTGTCAGTTCCAAACCAAGCACTTACCTTCTTTTGTTCTCATTATTCTTATCTGGATAGTAAGGGGTCCTTTAACAAACTTTTCAGTC---------------------------AGAAGTGATGAGATGGTCTCATCACCCCTGGATATCTACTCTTTAGCAAATT-----TCTAGTTGCCTGCCTCTGCCATCTGACCTGTTCTCTTCAAACCT----------------------ATTGAAGCAGAAGCAAA----------------------------CTTGTCATGGAAGAAGAA---------------------------------------------CATGAATGTGAGAACAGTGT-TTATTCCAATAAGT----TCTGTTGGATG------------AGTTGAGAGCC---CTTAA--------------------------TCCCGAGACTGAC----TTTCTTAACTTGCTGTTAATTGTAAACT----------GGGTCTCCTTAGCTTTGCTGAGTTTTGCGT------------------------------------------------------------------------AACTTCCTTCTTTACTCCAGGTATTCCCATGAGATTATTTGAAGGCAGGATGACTTTGCTAACACTTTGAGGATTTGTTAGGAATGAGTTGGTGATTCTGGccagatttttaattctttttcttttgagaag-----aggATTAACTAACAAAGCCTGTTGTGTGCTGAGTAGGTTATAGCTTGATTAATGTGATTTGACTCACTGCCCAAATAAGCAGCTGATAGGAGCTACAAAT-CCAGGGTCGAACTTAGAAATCAGATATAAACCAGAGAAACAGTGTATTAGAGTCCTAAAGAGCAATTTACTTCTCTCTCAGTGCACTT-TCCCGACACACAAATGGTTAAGGAGTGAAAAACAGGTGCATTAACGATTCTGAGAGGTGCGCATGGCCAGTGTGAATTAGCCAATCACCATAGGTTATGTTGGGTTCAGTGTCAAAGGATGA----ACAACAAGGTGAGAGGACAGTGATTTAGGCTCAAATCTGCTCTTAGCTGGTGTGTTTATGGGTAATTCACGTAATCTTTGTGGATCTCCATTGCCTTACTTGCAAAATGGGGTGCCAGGTGAAGTCATCGACTGGATCAGGCAGTTCCATTTGCTAAGTCTCTCATCCTTGGTCCTCTGTTTGAAATTTCCTGAAATTGTTGTCTGTGTTAATGCCTGTTTTGGGGTTTACTGccattactttttcctttctccaagCCCAACAAAAATCTTAAGGCATATTATGGTAAAATTTGCTCTGCTCCTCTTCTCCCACAGAATGATGTagatcattt-tgaaatattttagtgatAA

a score=54437
s chr3            98413568 4047 + 160039680 [encoded data, 4309 characters]
s HiC_scaffold_1 108269995 3581 - 233722169 [encoded data, 4309 characters]

a score=14242
s chr3            98421963 1720 + 160039680 CCTCTCTTAACCCCCTGCTCCCCCCCACCCCCAGCAAACCAATAAGTCACATTTGCAAACCTCTTCTTGCATGAGTCCCATCCTCCACCACCACCTTCAGGTGCACTGTATGTGCAGATCCAAGGGATGTACCTGACTGTTGAGTCTAACCTCCAGAAGGCAAAAGAGTGGTGTACAGT-GTGACTTGGGACAGAAGTCTCACATGGAGT------TGGTATACC--TCTGAGAAGGTTCACGACTATAATAATATCCCTTTCTTCC-----------------TTTGAAACTTGG---CAGCGTAGTT---GGTCCACCTTCCAAGGGAACCCATCTGCCCTGCATGATGCT---ATTGACTAAGCTCAGACACAACAGCTTCCCTAGGACATTTAAGGGAAGGGCTCAGTCTTTGC----------------ACTCTAAGAAGGGAGTATGTCATCACCAT--GGAGAAAGATCTGAGACACTGTTGGGGTGATGTGTCTGTC-------CAGATGAGCCGGTTTATCTTCGAGAGGTGGGCGGAGAGGA----------------GAGGAACAATGTACCCATTTCACAGCCTCGAAGCTCAGAGCACTAAGACTCTCTCTGA-TGTTTTCCACAGTGCCTTTTA----GTTTCCTTCTGATGCCCTCCCCGCGAGAAAGGTTAAGTAGCACTACCCTCTTTCCACTGAGGAG-ACTTAACCTAGTTGACTGAGGCTAGTTGACTTCCGTTGGGCCCGCCCCA-----------CCCAGGGGAGGGATCTCCTCAATGCATAACTCCTGCTTTTCAGGACAAGGAAGACCCTGATAGGGGAGGGAAAGCTCCTTGCCAAGGATGGGACATCCTTGCTCACCATACTTTTCTTTGCTCTTTCTATTTTAGCACGttctgtttttgagacagggtctctcctg---tagtgcagctgctctctgacacactgtttgagattctgctcctcctgcctccacctcctaagtgctgggatcccaattacacgtgagcacatgtggttctgtacggtgcctgggactcaactcagggtttacacaccaggcaagtaccctatcaagatgtatctgcgctgcatctccagccACTACTGCCTCCCCCCCCCCTTCTTCCCATGCACGGGAGCAAGTCTACAGCCTTATTCCTGCAGTCCTCTCTGGGGATTGCTTAGACAGCGGTATCCTTCAAACCACAGACCAAGATCCTTGACCTCGATGTGCCTTTCCTTCCTTGAGCTAAGCTGCAAGCATGATGGATGGCAGAAACTAATTATTTTGGCTCAGTTTCCCAGTGTTGACAGGGCATGCTTTGCATTTGAGATGCAAACTGGACATCCACAGAGGGCTTCAGAATCTGATGCTGTT------------GGGcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttttcttcctccttctcctccttctcctcctcctcctcctccttcccctccttctcccctttctcccccttctcctccttcttTGCAGGAGGACTACCAGTAGTCCCTGAT-ACATGTTCCTTTTCACGTTCATCTATAACTGACATACCACACTGAATGAAGTTCA------GACTGTGAATGTGGCTTGTAGCACAGCAGGCTCTAGCA--TCTGGCTCTTGCTTTCAACAAGCCTGCCACAGTTTCTATCATCTTGGCTTTCTTCT---AAAAATACAGCAGAGCCTTGCCACAAAGCCAGGCTGAGTGTGCCTTGGAAGACAGTAGTCCTAGGTAGGAAGTT
s HiC_scaffold_1 108276772 1422 - 233722169 CCTCCCCCGACACACTGCCTTCCTCCACT---AGTAAACCAATAAGCTATGTATATGAACCTAACTTTGCCTGTCTGCTTCCTTTC---------TTTAAGTGCATTATATGTGTAGGCTCA-GGGAGATACTTGTCTATTGAGTATGATCCCCAGAAGGCAAAAGAGTAATAGCCAGAAGTGGTTGGAGATAGTGATCTCTTGTACAATCTCTTGTAGGATACCGTTCTGAAAATGGTAATGGCTttaatcagatctttctctcacAGGCTAACAGAAGCAATCTTCAGTTTTGGAAATAGCATGTTTAGGGGCGTACCTTCTAAAGGAACTCAGCTGTATTTCAAGACATGTGGACTGACCAACCTCAAACA-------TTCTTTGAAACATTTAAGGGAATggcttggtttttcttttgttttcccattCTATTCTAAGAAG----TATATCATTATTGCTAGGAAAAAAATATACTATGTT-TTAGGGTGATGCATCTGTCAAAATTACAGAGGAACCAGCATGTCTTTGAGGTATAAA-GAATAGCATCAGAACTTAAAAATTGGGGAGTAATGTC----TGTTATGTTTGTAAAACTCAAAGCATCAA---TTACTCTGAGTATTTTACAGAATGCTTGTTAATTAGTTTCCGTGTGACACCCTCTCTGAGAGAAAGGTTAAGCGGCTTTCCC----TTCCACTGGTGAGGACTCAAACAA--TAA--GAGGTTAATTGACTTGCCTTGGGTTCTCCACAGAGAGGCTAACCCCACTGGAGAAATTTTCACTGTCTGTATCTCTTGCTTTCTATTCCAAAG-----------------------GCTCC-----AAGGA----------------ACCA------------------------------GGGCTGCCCTAGAGA---AGCCCCAACTGAGGCAGCACAACTTCCAACTAACGCA-GAAGTGTGTTGCTGAGCTTCatgcccttttct-----------------------------------------tttttgtggtgctgggagttgaaccca---------------------------------------------------tcAGTCA-------------------TTCTTTC---------------------------ATTCTTGGAA----CTACTGAGGTTGTGAGAAAGATGGTCTTTTCAAGGTCATTGTCCATGATCCTTGAACTAGAAATTGTTCTGCTGTTCTGTGCTAGGCTGTAGGAATGATGGATGGCTCAAATCAATTATT---GGTCA--TTCTCAGC-------AGAAGCCCTGTGAATTTGAACTATAAACTTGACATCTTTGGAAGGCTTAGGAATCTGAtattattttcagaaagaaaagaatt----------------------------------------------------------------------------------------------------------------------------------------cactTATTGGCCTTTTCTGTAGAAGAGGAACCAGTTTTTCTTGGTGGCATGTTGGTATTAAAATCTGTCTAAAATTTGGATGCTGCA-------AAATACATAATGGGACTATAGAGATGGTTTCTAATATAGAAAGCTCCTGTATCTCTTCCTCTGCCCCCCAACAAAGCTGCT-CAGTGGTGATCATCTTGGCTTCCTGCTCTCAGCAAGGCAGCAGATCTTTGACCCAAAACTACATTGGTGGTGCCACTGAAGATA-CGATTTTAGATAAGAAGTT

a score=23559
s chr3            98424956 863 + 160039680 TCAAGTCATAAATGTACACT--CAGACATTTACTTCGTAGACTGAAC--------------------TGAGTGCTGGCATGTGGT---CTCAGTGT---GTGGCCATTGTCCCTCCCCTACCCAGA---TGTTTTACTT-TACACAGTTGTTTATCCGAGGTGTGCGTGTGGTAGAGAGTTGAC----TCGCTGTTGGCATATGCAGCGTGTTTTATTGGACGGATAAATCAAGACCACACGGAGTAAAAGCTTGAATGCAGGTTGATAGAACCTTTCCCTCTCTGTGTTTTGTCTG-AGCAGGGACTCTTGCTTACCTTCTTTGCCCTTCTCTTGCTGGATGGAACAGGAAGATAATCAGGGTGTGTGTGAATACCAGACTTCTGAAGACAGAGGCATGGATTCTGACTTGGAGAACTCTGAGGACCGAGAAGGGGACCCAGAAGAAAGAGGAATGGGCTCTAATCCATGGGACACAGAAGATAGAGGCCACCTGGAGCAGGAAGTGGACTCCAACCCACAGGATGATGATCTAAGAGGGGACTCACGAGAGAGGGACATAGCGTCCACTGTCTGTTCAGGTGAGAAGA---AT-GAGTATCCTCTGAGGTGGCAGAACTCACATTTACATTGGATTCCACTGGCAT-ACAACCAGGGCCAGCATCC----TGGGGA---CCTAGGGG----------------------------TGGGCTCTCCAAAAGTTGGTGCCATGAGTATTCATTCCTTTATACCATCTGCCACTGAGGCCACACTGGTAAGTATGAATAAA--GGCC-ACTCCTAGGTGCTGCTCCT-------------TGCTACAGATGATCACTTGTGACAACACTACAGTGGAAT--CGCAGCCAATACTGGGGCCTATCTCATAGA--TGCTGGGGGAGTACCATGATGTGTTGGATTTAAACAGTGACTTTGGAC
s HiC_scaffold_1 108279417 932 - 233722169 TTAAACTGTAAACTGACACCAATAGATGTCTAATTCATAGACGGAAGCAGATCAAACCTGGGTCCAGTGAATGTTGCCATGTTTTATCCTCAGAATAAGGTTGCCTCCTTTCTTCCACCAACCAGCACCCACTCCCCTCATATCCAGTTGTTTAAGTTAGGT---TGGGGAGTACAGATTTGCCATCTTAGTCTTCAGACTCTACAGT-CATTTTATTAGATGGG-AAAccaaggcca---ggcatggtggtgtgaaTCCAGGTTGATGTGACCTTTCTTCCTATGTATTTTGTCTGGAGCAAGGGTACTTGGTCACCCCCCTTGCTCTTTTCTTCCTAGATGGAACAAGAAGAT---CAGGGTGTGTGTGAATACCAGGACTCAGAAGACAGAGAGATGGGTTCTGATTTTGAGAACACCGAGGACAGGGAAGGGGACCCAAAGGAAAGAGGAATGGATTCTAATCCACAGGATGCAGGAGACAGAGGCCACCTGGTGGAGGAGATGGACTCCAATCCACAGGACGAAGCTCTGAGAGGGCACATGCGGGAGAGGGAAGTAGCACCTAGCACCTGCACAGGTGAGGAGATGGATGGAATTTCCCCC-----------ACTCACCTTTACACTGCGCTTCTCTAGAATCATAATCATG--CAGCATTCTTTGTGGGAAAGCTCTAGAGGAGACCACTAAGCAGGATTCTGTTCTGACTTAGCCTTCTTAGTGTGGGTACAGGGGAATGTTTTTCTTCCATTGAGTCTG--AGGTAGGCTCTGCTGGTCAGTGTGGGCAAAGTGGCTGACTGATGGGCACAGCACTTTGCAGCAGAGTGCTGCTATAAATCACCACTTGT-ACAAGTGTGCAACAGAATTACACAGGTAACATTGGAACCTATCTCACAGGGTTGCTGGATGAGT-TAAAGATTTGCTGCATTTAAAGAGATacttagcac

a score=183564
s chr3            98426896 5193 + 160039680 [encoded data, 5552 characters]
s HiC_scaffold_1 108281070 5031 - 233722169 [encoded data, 5552 characters]

a score=10431
s chr3            98427501 497 + 160039680 GGCCAGTATCATGGACGC------------GCCCACCATCTGCCCAGACTGCGGGGAGAGCTTTAGCCCGGGCGCCG---CATTCCTGC--AGCACCAGCGCATCCACCGCCTGGCAGAGGCCGCC--GCCGTGGCCAGCTTGG--AGCCCTTCGGTTTGGCCGGCGAGTGCGGAGGAGTGGTGGGGATGatgggcatgggtatgggcgtggg--------catgggcgtggCCGGCGG------CTTCGGGGCGGG---------GCCCACGCTGGCCCGGCCCCCTCGCGAAAAGC--CCTTCCGC-TGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcgg
s HiC_scaffold_1 108282109 527 - 233722169 GGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTT-----CGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCAC-ACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCT---------GGCGCTCAGATCTGGTGAAGC--ATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGG

a score=16564
s chr3            98427513 784 + 160039680 GGACGCGCCCACCATCTGCCCAGACTGCGGGGAGAGCTTTAGCCCGGGCGCCGCATTCCTGCAGCACCAGCGCATCCACCGCCTGGCAGAGGCCGCCGCCGTGGCCAGCTTGGAGCCCTTCGGTTTGGCCGGCGAGTGCGGAGGAGTGGTGGGGATGatgggcatgggtatgggcgtgggcatgggcgtggCCGGCGGCTTCGGGGCGGGGCCCACGCTGGCCCGGCCCCCTCGC------------GAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAG------CGCACGCACTCGGGCGAGCGG
s HiC_scaffold_1 108282025 709 - 233722169 GGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTC------------ACACCTGCTCAGCCACCGGCGTGCACA------CGCAGCGGCCAGC------------GGT-------GCGGGCGCAGAGGCGCTGCGG----------CCT---TTTGCCTGCGGG---GAGTGCGGGAAG-GGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACA--GGCGAGAAGC------------------------------------CCTTCCGC-TGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGCACCAGAAGTTACACCTGTGCTAGGGTGGGTGG

a score=4903
s chr3            98427519 400 + 160039680 GCCCACCATCTGCCCAGACTGCGGGGAGAGCTTTAGCCCGGGCGCCGCATTCCTGCA-GCACCAGCGCATCCA----------CCGCCTGGCAGAGGCCGCCGCCGTGGCCAGCTTGGAGCCCTTCGGTTTGGCCGGCG-AGTGCGGAGGAGTGGTGGGGATGatgggcatgggtatgggcgtggg----catgggcgtggCCGGCG--------GCTTCGGGGCGGGGCCCACGCTGGCCCGGCCCCCTCGC------------GAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAG
s HiC_scaffold_1 108282307 418 - 233722169 GCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGC-TCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGC-------AAGGCCTTCGG--------GCGCAATTCGCA--CCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGCACCAGAAGTTACACCTGTGCTAG

a score=25131
s chr3            98427519 839 + 160039680 GCCCACCATCTGCCCAGACTGCGGGGAGAGCTTTAGCCCGGGCGCCGCATTCCTGCAGCACCAGCGCATCCACCGCCTGGCAGAGGCCGCCGCCGTGGCCAGCTTG----GAGCCCTTCGGTTT-GGCCGGCGAGTGCGGAGGAGTGGTGGGGATGatgggcatgggtatgggcgtgggcatgggcgtggCCGGCGGCTTCGGGGCGGGGCCCACGCTGGCCCGGCCCCCTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACC
s HiC_scaffold_1 108281947 758 - 233722169 GCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCAC-ACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGC------------------------CACCGGCGTGCACACGCA-GCGGCCAGCGGTGCGGGCGCAGAG---GCGCTG------------------CGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAG---------------------------------------CGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGCACC

a score=22161
s chr3            98427730 798 + 160039680 CTGGCCCGGCCCCCTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACG-----------------GGCG-AGAAGCCCTACC--------CGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGG
s HiC_scaffold_1 108281924 783 - 233722169 CTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCG--TGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACAC--CGGGGAGAAGCCGCACGG-----------------------CTGCAGC--------------GAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGCACCAG

a score=12377
s chr3           98427743 890 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGC-ACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACG-CACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGA
s HiC_scaffold_1 62612636 851 - 233722169 CTGGAGAAAGGCCCTATCAGTGTAATCAGTGCAAACAGAGCTTCAGTCAGAGAAGGAGCCTTGTTAAACATCAGAGGATTCACACAGGTGAGAAACCTCATAAATGTAGTGactgtgggaaagccttcagttGGAAGTCACACCTTATTGAGCAtcaaagaactcacactggtgaAAAGCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAAC-Atcagagaattcacactggggaaag---------------------------------------ACCCCACAAATGTggggaatgtgggaaagcctttagGTTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGT-CAACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGCATCAAAGGATCCACACTAGGGAGAAGATttattcatacagtgaaactaAAGAAAGTTTTGATCCCAATTGCAATCTCATTATACAGCAAGAAGTCTACCCTAAGGAAAAATCTTACAAATGTGATGAATGTGGAAAAACTTTTAGTGTTAGTGCTCACCTTGTACAACATCAAAGAATCCATACTGgtgaaaagccctacctatgtACTGTTTGTGGGAAAAGCTTCAGTCGAAGCTCATTTCTTATTGAACATCAGAGAATCCACACTGGTGAGAGA

a score=12417
s chr3           98427743 870 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGC-ACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGA
s HiC_scaffold_1 62612552 831 - 233722169 ctggtgagaggCCCTATGAGTGTAATTACTGTGGAAAAACCTTTAGTGTGAGCTCTACTCTTATTAGACATCAGAGAATCCACACTGGAGAAAGGCCCTATCAGTGTAATCAGTGCAAACAGAGCTTCAGTCAGAGAAGGAGCCTTGTTAAACATCAGAGGATTCACACAGGTGAGAAACCTCATAAATGTAGTGactgtgggaaagccttcagttGGAAGTCACACCTTATTGAGCAtcaaagaactcacactggtgaAAA---------------------------------------GCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACAtcagagaattcacactggggaaagACCCCACAAATGTggggaatgtgggaaagcctttagGTTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCA-ACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGCATCAAAGGATCCACACTAGGGAGAAGATttattcatacagtgaaactaAAGAAAGTTTTGATCCCAATTGCAATCTCATTATACAGCAAGAAGTCTACCCTAAGGAAAAATCTTACAAATGTGATGAATGTGGAAAAACTTTTAGTGTTAGTGCTCACCTTGTACAACATCAAA

a score=5871
s chr3           98427743 236 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTC-GCACTTGCTCAGC
s HiC_scaffold_1 62613392 237 - 233722169 CTGgtgaaaagccctacctatgtACTGTTTGTGGGAAAAGCTTCAGTCGAAGCTCATTTCTTATTGAACATCAGAGAATCCACACTGGTGAGAGACCTTATCTATGCAGACAGTGTGGCAAAAGTTTTAGTCAACTTTGTAATCTTATCCGACATCAAGGTGTTCACACAGGTAATAAGCCTCATAAGTGTGAGGAATGTGGAAAGGCCTTTAGCCGAAATTCAGGTCTTATTCAGC

a score=10894
s chr3           98427743 855 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCG-CACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACC
s HiC_scaffold_1 73341596 814 - 233722169 ctggagaaaagcCATATGAATGTGTTCAATGTGGCAAAGCCCATGGTCATAAACATGCCCTTACTGACCACCtaagaattcatactggggaaAAGCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAAGCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAAC-ATGTGAGAACTCATACAG-----------------------GTGAAAT----------------ACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTTTGGACATAGCTCATCTCTTACTTACCATATGAGAACCCATACTGGTGAAAATCCCTTCGAATGTAATCAGTGTGGGAAGGCCTTTAAACAAATTGAAGGTCTTACTCAACATCAGAGAGTTCATACCGGGGAGAAACCATAtgaatgtaatgaatgtgggaaagcttttagccaAAAGTCACATCTCAttgtacatgaaagaactcacacaggTGAGAAACCGTATGAATGCAATGAATGTGGAAAAACTTTCAATGCAATGTCACAACTCGTTATACATCAGAGATcccacacaggagagaaaccctatgaatgtaatgaatgtgggaaaACCTTCAA--ACAAAATGCATC

a score=14168
s chr3           98427743 811 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCA
s HiC_scaffold_1 62612468 772 - 233722169 CTGGTGAGAAGCCCTTTCAGTGCAATGAATGTGGGAAAAGCTTTAGTCGTAGTTCATTTGTTATTGAACAtcagagaattcacactggtgagaggCCCTATGAGTGTAATTACTGTGGAAAAACCTTTAGTGTGAGCTCTACTCTTATTAGACATCAGAGAATCCACACTGGAGAAAGGCCCTATCAGTGTAATCAGTGCAAACAGAGCTTCAGTCAGAGAAGGAGCCTTGTTAAACATCAGAGGATTCACACAGGTGAGAA---------------------------------------ACCTCATAAATGTAGTGactgtgggaaagccttcagttGGAAGTCACACCTTATTGAGCAtcaaagaactcacactggtgaAAAGCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACAtcagagaattcacactggggaaagACCCCACAAATGTggggaatgtgggaaagcctttagGTTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGCATCAAAGGATCCACACTAGGGAGAAGATtta

a score=13839
s chr3           98427743 877 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCA
s HiC_scaffold_1 62612804 838 - 233722169 ctggtgaAAAGCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACAtcagagaattcacactggggaaagACCCCACAAATGTggggaatgtgggaaagcctttagGTTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATAC-----------------------------------TGGTGA----ACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGCATCAAAGGATCCACACTAGGGAGAAGATttattcatacagtgaaactaAAGAAAGTTTTGATCCCAATTGCAATCTCATTATACAGCAAGAAGTCTACCCTAAGGAAAAATCTTACAAATGTGATGAATGTGGAAAAACTTTTAGTGTTAGTGCTCACCTTGTACAACATCAAAGAATCCATACTGgtgaaaagccctacctatgtACTGTTTGTGGGAAAAGCTTCAGTCGAAGCTCATTTCTTATTGAACATCAGAGAATCCACACTGGTGAGAGACCTTATCTATGCAGACAGTGTGGCAAAAGTTTTAGTCAACTTTGTAATCTTATCCGACATCAAGGTGTTCACACAGGTAATAAGCCTCATAAGTGTGAGGAATGTGGAAAGGCCTTTAGCCGAAATTCAGGTCTTATTCAGCATCAGAGAATACA

a score=8132
s chr3           98427743 615 + 160039680 CTCGCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTC-GCACTTGCTCAGCCAccggcgcgcgcacgcggcggcggg------------cggcgg-------------------------cgcgggctcg---------------------------------------------------gcggg------ctcggcggcggcgct-----------------------------------gcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCC-GCAACTCGCACCTCGTCAACCACC
s HiC_scaffold_1 62612972 744 - 233722169 ctggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGC-ATCAAAGGATCCACACTAGGGAGAAGATttattcatacagtgaaactaAAGAAAGTTTTGATCCCAATTGCAATCTCATTATACAGCAAGAAGTCTACCCTAAGGAAAAATCTTACAAATGTGATGAATGTGGAAAAACTTTTAGTGTTAGTGCTCACCTTGTACAACATCAAAGAATCCATACTGgtgaaaagccctacctatgtACTGTTTGTGGGAAAAGCTTCAGTCGAAGCTCATTTCTTATTGAACATCAGAGAATCCACACTGGTGAGAGACCTTATCTATGCAGACAGTGTGGCAAAAGTTTTAGTCAACTTTGTAATCTTATCCGACATCAAGGTGTTCACACAGGTAATAAGCCTCATAAGTGTGAGGAATGTGGAAAGGCCTTTAGCCGAAATTCAGGTCTTATTCAGCATCAGAGAATACATACAGGAGAGAAACCTTATAAGTGTGAGAAATGTAACAAAAGTTTCAGTCAACAACGCA-GCCTTGTTAACCACC

a score=12332
s chr3           98427746 835 + 160039680 GCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCAC-----GCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTT
s HiC_scaffold_1 62612723 796 - 233722169 GTGAGAAACCTCATAAATGTAGTGactgtgggaaagccttcagttGGAAGTCACACCTTATTGAGCAtcaaagaactcacactggtgaAAAGCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACAtcagagaattcacactggggaaagACCCCACAAATGTggggaatgtgggaaagcctttagGTTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaa---------------------------------------accttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGCATCAAAGGATCCACACTAGGGAGAAGATttattcatacagtgaaactaAAGAAAGTTTTGATCCCAATTGCAATCTCATTATACAGCAAGAAGTCTACCCTAAGGAAAAATCTTACAAATGTGATGAATGTGGAAAAACTTTTAGTG-----TTAGTGCTCACCTTGTACAACATCAAAGAATCCATACTGgtgaaaagccctacctatgtACTGTTTGTGGGAAAAGCTTCAGTCGAAGCTCATTTCTTATTGAACATCAGAGAATCCACACTGGTGAGAGACCTTATCTATGCAGACAGTGTGGCAAAAGTTT

a score=10905
s chr3            98427746 464 + 160039680 GCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTAC--CCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCT-CGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAG
s HiC_scaffold_1 108282300 425 - 233722169 GTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCC--AGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAG-CACCAGCGCACCCACACGGGTGAGA---------------------------------------AACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGCACCAGAAGTTACACCTGTGCTAG

a score=8795
s chr3            98427746 233 + 160039680 GCGAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCA-CTTGCTCAGC
s HiC_scaffold_1 108282468 234 - 233722169 GCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGC

a score=13536
s chr3           98427748 912 + 160039680 GAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAA-GACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAGGGCATCCGAATGAGGCGGCGGTGGGA
s HiC_scaffold_1 73341517 871 - 233722169 gagaaaccctatgaatgcaATGAATGTGGAATTGCCTTTAGCCAGAAGTCTCACCTTGTTGTACATcagagaactcacactggagaaaagcCATATGAATGTGTTCAATGTGGCAAAGCCCATGGTCATAAACATGCCCTTACTGACCACCtaagaattcatactggggaaAAGCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAA---------------------------------------GCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAACATGTGAGAACTCATACAGGTGAAATACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTTTGGACATAGCTCATCTCTTACTTACCATATGAGAACCCATACTGGTGAAAATCCCTTCGAATGTAATCAGTGTGGGAAGGCCTTTAAACAAATTGAAGGTCTTACTCAACATCAGAGAGTTCATACCGGGGAGAAACCATAtgaatgtaatgaatgtgggaaagcttttagccaAAAGTCACATCTCAttgtacatgaaagaactcacacaggTGAGAAACCGTATGAATGCAATGAATGTGG-AAAAACTTTCAATGCAATGTCACAACTCGTTATACATCAGAGATcccacacagg--agagaaaccctatgaatgtaatgaatgtggga

a score=17499
s chr3            98427748 696 + 160039680 GAAAAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACG----GGCGAGCGGCCCAACC----------------------TGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGC-CGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCAC---------GCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAG
s HiC_scaffold_1 108282026 681 - 233722169 GAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCG--TGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAA---------------------------------------GCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCA-GCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCG---------ACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACCGCCGCATCCACACGGGCAACAAGCCACACAAGTGTACGGGTTGTGGCAAAGACTTCCGCTACAAAACGCACCTCGCACAGCACCAG

a score=9702
s chr3           98427751 848 + 160039680 AAGCCCTTCCGCTGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCC-TCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCT
s HiC_scaffold_1 73341436 809 - 233722169 AAACCCTATGAGTGTGATCAATGTGGCAAGGTTCTCAGCCATAAACAAGGACTTATTGACCACCACAGAACACatacaggagagaaaccctatgaatgcaATGAATGTGGAATTGCCTTTAGCCAGAAGTCTCACCTTGTTGTACATcagagaactcacactggagaaaagcCATATGAATGTGTTCAATGTGGCAAAGCCCATGGTCATAAACATGCCCTTACTGA-CCACCtaagaattcatactggggaaAA---------------------------------------GCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAAGCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAACATGTGAGAACTCATACAGGTGAAATACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTTTGGACATAGCTCATCTCTTACTTACCATATGAGAACCCATACTGGTGAAAATCCCTTCGAATGTAATCAGTGTGGGAAGGCCTTTAAACAAATTGAAGGTCTTACTCAACATCAGAGAGTTCATACCGGGGAGAAACCATAtgaatgtaatgaatgtgggaaagcttttagccaAAAGTCACATCT

a score=16140
s chr3           98427763 871 + 160039680 TGCGGGGAGTGCGGCAAAGGCTTCAGCCGCAACACCTACCTGACCAACCACCTGCGGCTGCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAG
s HiC_scaffold_1 62612404 828 - 233722169 tgtgaagaatgtgggaaggGTTTTGTTCGGAAGGCCCATTTCATTCAACATCAAAGGGTTCATACTGGTGAGAAGCCCTTTCAGTGCAATGAATGTGGGAAAAGCTTTAGTCGTAGTTCATTTGTTATTGAACAtcagagaattcacactggtgagaggCCCTATGAGTGTAATTACTGTGGAAAAACCTTTAGTGTGAGCTCTACTCTTATTAGACATCAGAGAATCCACACTGGAGAAAG---------------------------------------GCCCTATCAGTGTAATCAGTGCAAACAGAGCTTCAGTCAGAGAAGGAGCCTTGTTAAACATCAGAGGATTCACACAGGTGAGAAACCTCATAAATGTAGTGactgtgggaaagccttcagttGGAAGTCACACCTTATTGAGCAtcaaagaactcacactggtgaAAAGCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACAtcagagaattcacactggggaaagACCCCACAAATGTggggaatgtgggaaagcctttagGTTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTCACTCGTCATCAACGAATTCACACAGGAGACAAACCTCATAAATGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTTATTCAGCATCAAAGGATCCAC----ACTAGGGAG

a score=22595
s chr3            98427822 788 + 160039680 GCACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCG--CATCCACACCGGC----------------GAGAAGCCGCA------CGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACC
s HiC_scaffold_1 108281848 773 - 233722169 GCCCCCACGCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAA---------------------------------------GCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCGTGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAGCGCACCCACACGGGTGAGAAACCCTACACGTGCATCGAGTGCGGAAAGAGCTTCATTCAGAGCTCACACCTGATCCGCCACC

a score=12882
s chr3           98427824 763 + 160039680 ACACGGGCGAGCGGCCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTC-GTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACG---CTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTA
s HiC_scaffold_1 62612381 724 - 233722169 ACACAGAAGAGAAATGCCAtaaatgtgaagaatgtgggaaggGTTTTGTTCGGAAGGCCCATTTCATTCAACATCAAAGGGTTCATACTGGTGAGAAGCCCTTTCAGTGCAATGAATGTGGGAAAAGCTTTAGTCGTAGTTCATTTGTTATTGAACAtcagagaattcacactggtgagag---------------------------------------gCCCTATGAGTGTAATTACTGTGGAAAAACCTTTAGTGTGA-GCTCTACTCTTATTAGACATCAGAGAATCCACACTGGAGAAAGGCCCTATCAGTGTAATCAGTGCAAACAGAGCTTCAGTCAGAGAAGGAGCCTTGTTAAACATCAGAGGATTCACACAGGTGAGAAACCTCATAAATGTAGTGactgtgggaaagccttcagttGGAAGTCACACCTTATTGAGCAtcaaagaactcacactggtgaAAAGCCCTATCATTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACAtcagagaattcacactggggaaagACCCCACAAATGTggggaatgtgggaaagcctttagG---TTAAGTACATATCTTATACAACACCaaaaaattcacactggtgagaaaccttttCTTTGCGTTGAGTGTGGAAAAAGCTTCAGTCGGAGTTCATTCCTTATTGAACATCAGAGGATCCATACTGGTGAACGACCTTATCAATGCAAAGAGTGTGGGAAAAGTTTCAGTCA

a score=26640
s chr3            98427838 783 + 160039680 CCCAACCTGTGCGCCGACTGCGGCAAGAGCTTCAGCTGGCGCGCCGACCTGCTCAAGCACCGGCGCCTGCACA--CGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgca-----------cgcggcggcgggcggcggcgcgggctcggcg--ggctcggcggcggcgct-gcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTC---------------GGGCGA---------GCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATG-CGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCAC
s HiC_scaffold_1 108281648 816 - 233722169 CCCACCATCTGCCCGGACTGTGGGGAGAGCTTCAGCCCTGGTGCGGCTTTCCTGCAGCACCAACGCATTCACCGCTTGGCG-GAGGCCGCTGCTGTGGCCAGTCTGCAGT----CCTTTGGCCT-GGCGAGTGAGTG-TGGGGCAGTGGTGGGCATGATGGGGGTAAGCGTGGCAGGGGCGTTCGGAGCGGGGCCCGCGTTGGCCCGGCCCCCACGCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCGTGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCACGCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAG-TGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCAC

a score=17681
s chr3            98427903 709 + 160039680 CCTGCACACGGGCGAGAAGCCCTACCCGTGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcacgcggcggcgggcggcggcgcgggctcggcgggctcggcggcggcgctgcggcccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACAC---------------GGGCG-AGAAGCCCTACA--------TGTGCTCCGAGTGCGGCGAGACCTTCA-GCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCG---ACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAG
s HiC_scaffold_1 108281845 694 - 233722169 CCGGCCCCCACGCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAG-----------------------------------GCGA----GCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCGTGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCA-ACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCAC---GCACAAGCGCACGCATTCGGGAGAGCGGCCTTACGTGTGTCGCGAGTGTGGCAAGGCCTTCGGGCGCAATTCGCACCTGGTGAACCACTTGCGGGTGCACACAGGCGAGAAGCCCTTCCGCTGTGGCCAGTGCGAAAAGTGCTTTAGCGACTTCTCCACGCTCACTCAGCACCAG

a score=19195
s chr3            98427931 710 + 160039680 TGCCCGGAGTGCGGCGAAGCCTTCAGCCTCAGCTCGCACTTGCTCAGCCAccggcgcgcgcac---gcggcggcgggcggcggcgcgggc--tcggcgg-------gctcggcg-------gcggcgctgcggcccTTCGCATGCGGGGAGT----GCGGCAAGGG-GTTCGT-GCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACAC--CGGCGA----------------------GAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCT-TGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAGGGCATCC
s HiC_scaffold_1 108281657 737 - 233722169 TGCCCGGACTGTGGGGAGAGCTTCAGCCCTGGTGCGGCTTTCCTGCAGCACCAACGCATTCACCGCTTGGCGGAGGCCGCTGCTGTGGCCAGTCTGCAGTCCTTTGGCCTGGCGAGTGAGTGTGGGGCAGTGG---TGGGCATGATGGGGGTAAGCGTGGCAGGGGCGTTCGGAGCGGGGCCCGCGTTGGCCCGGCCCCCAC-------------GCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCGTGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCACACAGGTGAAAAGCCCTACATGTGCTCTGAGTGCGGGGAGACCTTCAGCGTGAGCTCGCACCTGTTCAC-GCACAA------GCGCACGCATTCGGGAGAGCGGCC

a score=11486
s chr3            98428014 653 + 160039680 gggctcggcgggctcggcggcggcgctgcgg-----cccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACC--GGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGC--TCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTC---CACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACAC--------------CGGCAACA----------AGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCACTTGTGTTAGGGAG--GGCATCCGAATGAGGCGGCGGTGGGAGTCGTCT
s HiC_scaffold_1 108281612 644 - 233722169 GAGCTTGACAGCCTGGTGGCCAGCATCATGGACTCCCCCACCATCTGCCCGGACTGTGGGGAGAGCTTCAGCCCTGGTGCGGCTTTCCTGCAGCACCAACGCATTCACCGCTTGGCG-GAGGCCGC--TGCTGTGGCCAGT-CTGCAGTCCTTTGGCCTGGCGAGTGAGTGTGGGGCAGTG-----GTGGGCATGATGGGGGTAAGCGTGGCAGGGGCGTTCGGAGCGGGGC--------CCGCGTTGGCCCG-----------------------GCCCCCACGCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCA---AGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCGTGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAG----CGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTT

a score=9082
s chr3           98428045 536 + 160039680 cccTTCGCATGCGGGGAGTGCGGCAAGGGGTTCGTGCGCCGCTCGCATCTGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCG-------GACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTT
s HiC_scaffold_1 73341523 536 - 233722169 ccctatgaatgcaATGAATGTGGAATTGCCTTTAGCCAGAAGTCTCACCTTGTTGTACATcagagaactcacactggagaaaagcCATATGAATGTGTTCAATGTGGCAA-------AGCCCATGGTCATAAACATGCCCTTACTGACCACCtaagaattcatactggggaaAAGCCCTATGAATGTACTGAATGTGGAAAAACTTTTAGACACAGCTCAAACCTTATCCAACATGTGAGATCTCATACAGGTGAAAAGCCTTatgaatgtaaggaatgtggaaaaTCTTTTAGGTATAACTCATCTCTTACTGAACATGTGAGAACTCATACAGGTGAAATACCATATGAATGTAATGAATGTGGCAAAGGTTTTAAGTATAGTTCATCCCTGACAAAACATATGCGAATTCATACAGGTGAGAAACCTTTCGAATGTGATGAGTGTGGGAAAACATTCAGCAAAAAGTCACACCTCATTATACATCAAAGAACTCATACAAAAGAGAAACCTTATAAATGTGATGAATGTGGAAAAGCCTT

a score=12803
s chr3            98428094 527 + 160039680 TGGCCAATCACCAGCGCATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGT------GCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTC-------------------CACGCTCACGCAG----CACCAGCGCACGCACACCGGCGA-GAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCAC
s HiC_scaffold_1 108281742 554 - 233722169 TGGCCAGTCTGCAGTCCTTTGGC-CTGGCGAGTGAGTGTGGGGCAGTGGTGGGCATGATGGGGGTAAGCGTGGCAG-GGGCGTTCGGAGCGGGGCCCGCGTTGGCCCG-GCCCCCACGCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACCTGCTCAGCCACCGGCGTGCACACGCAGCGGCCAGCGGTGCGGGCGCAGAGGCGCTGCGGCCTTTTGCCTGCGGGGAGTGCGGGAAGGGCTTCGTGCGCAGGTCCAACCTGGCCAACCACCAGCGCATCCACACCGGGGAGAAGCCGCACGGCTGCAGCGAGTGCGGGAAGCGCTTCAGCTGGCGCTCAGATCTGGTGAAGCATCAGCGTGTGCAC

a score=4174
s chr3            98428110 136 + 160039680 CATCCACACCGGCGAGAAGCCGCACGGCTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTC
s HiC_scaffold_1 134081835 136 - 233722169 catTCCCACAGGTGAGAAGCCCCACAAGTGCCAGGTGTGTGGCAAGGCATTCAGCCAGAGCTCCAACCTCATCACGCACAGCCGCAAGCATACAGGCTTCAAGCCCTTTGGCTGTGACCTGTGTGGCAAGGGTTTC

a score=8313
s chr3            98428137 470 + 160039680 CTGCGGCGAGTGCGGCAAGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACA--CGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGT----GTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGC
s HiC_scaffold_1 108281656 433 - 233722169 CTGCCCGGACTGTGGGGAGAGCTTCAGCCCTGGTGCGGCTTTCCTGCAGCACCAACGCATTCACCGCTTGGCGGAGGCCGCTGC-TGTGGCCAGTCTGC----AGTCCTTTGGCCTG-----------------------GCGAGTGAGTGTGGGGCAGTGG---TGGGCATGATGGGGGTAAGCGTGGCAGGGGC---GTTCGGAGCGGGGCCCGCGTTGGCC-------CG-GCCCCCACGCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCTGGCGCGCAGACCTGCTCAAGCACCGCCGCCTGCACACGGGGGAGAAGCCCTACCCGTGCCCTGAGTGCGGCGAGGCCTTCAGCCTCAGCTCACACC-TGCTCAGC

a score=7341
s chr3           98428154 467 + 160039680 AGCGCTTCAGCTGGCGCTCGGACCTGGTGAAGCACCAGCGCGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGA--GCTC------GCACCTCTTCACGCA----------CAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTCAGCGACTTCTCCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCAC
s HiC_scaffold_1 71577445 468 - 233722169 AGTGCCTCACCTAGC--------------AAACCTCATAGaattcacactgcagagaaacccAGTATGTGTGCTGATTGTAGAAAAACTCATAATAAAAAAGCTCATAGTGGTAGTTCATCACTCAAGTCATGTCGCAAAACTAAGAATGTAGACAAAC---CCTACAAATGTAAACactgtggaaaaggtttcaccctgTGTACTGATGTCAGTAAACatcaaagaattcatactggagaaaaaCCCTTTCAGTGTAAAGAGTGTGGGAGACCCTTCAGTGACAGTTCAACTCTTGCTCAACATCAGCGTACTCATACTGGAGAAAAACCTTACAAATGCAAAGATTGTGGGAAATCCTTTACTCATAGCTCTTCCCTTGCCAAacatcagagaattcatactggagagaaaccatattcaTGTAATGAATGTGGAAAATCCTTTAGACAGACTTCTTGCCTTACACGACAtcagagaattcac

a score=5490
s chr3            98428194 136 + 160039680 CGTGCACACGGGCGAGAAGCCCTACATGTGCTCCGAGTGCGGCGAGACCTTCAGCGTGAGCTCGCACCTCTTCACGCACAAGCGCACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTC
s HiC_scaffold_1 134081835 136 - 233722169 catTCCCACAGGTGAGAAGCCCCACAAGTGCCAGGTGTGTGGCAAGGCATTCAGCCAGAGCTCCAACCTCATCACGCACAGCCGCAAGCATACAGGCTTCAAGCCCTTTGGCTGTGACCTGTGTGGCAAGGGTTTC

a score=5572
s chr3            98428278 136 + 160039680 CACGCACTCGGGCGAGCGGCCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACCGGCGAGAAGCCCTTCGGCTGCGGCCAGTGCGAGAAGCGCTTC
s HiC_scaffold_1 134081835 136 - 233722169 catTCCCACAGGTGAGAAGCCCCACAAGTGCCAGGTGTGTGGCAAGGCATTCAGCCAGAGCTCCAACCTCATCACGCACAGCCGCAAGCATACAGGCTTCAAGCCCTTTGGCTGTGACCTGTGTGGCAAGGGTTTC

a score=5928
s chr3            98428297 289 + 160039680 CCCTACGTGTGCCGGGAGTGTGGCAAGGGCTTCGGCCGCAACTCGCACCTCGTCAACCACCTGCGCGTGCACACC--GGCGAGAAGCCCTTCGGCTGCGGCCAGT------------------GCGAG---------------------------------AAGCGCTTCAGCGACTTCT----CCACGCTCACGCAGCACCAGCGCACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCT
s HiC_scaffold_1 108281648 337 - 233722169 CCCACCATCTGCCCGGACTGTGGGGAGAGCTTCAGCCCTGGTGCGGCTTTCCTGCAGCACCAACGCATTCACCGCTTGGCG-GAGGCCGCT--GCTGTGGCCAGTCTGCAGTCCTTTGGCCTGGCGAGTGAGTGTGGGGCAGTGGTGGGCATGATGGGGGTAAGCGTGGCAGGGGCGTTCGGAGCGGGGCCCGCGTTGGCCCGGCCCCCAC------GCGAGAAGCCTTTCCGCTGTGGGGAGTGCGGCAAGGGCTTCAGTCGCAACACCTACCTGACCAACCACCTGCGCCTGCACACAGGCGAGCGGCCCAACCTGTGTGCGGACTGCGGCAAGAGCTTCAGCT

a score=5916
s chr3            98428446 194 + 160039680 CACGCACACCGGCGAGAAGCCCTACACATGTCTCGAGTGCGGCAAGAGCTTCATCCAGAGCTCCCACCTCATCCGCCACCGGCGCATCCACACCGGCAACAAGCCTCACAAATGCGCGGGCTGTGGCAAGGGCTTCCGCTACAAGACGCACCTTGCACAGCACCAGAAGTTGCA-CTTGTGTTAGGGAGGGCATC
s HiC_scaffold_1 134081835 195 - 233722169 catTCCCACAGGTGAGAAGCCCCACAAGTGCCAGGTGTGTGGCAAGGCATTCAGCCAGAGCTCCAACCTCATCACGCACAGCCGCAAGCATACAGGCTTCAAGCCCTTTGGCTGTGACCTGTGTGGCAAGGGTTTCCAGAGGAAGGTGGATCTCAGGAGGCACCGAGAGATGCAGCATGGGCTCAAGTGAGCATC

a score=44549
s chr3            98445605 1317 + 160039680 CAGCAC-TGACTATGGACTTCACTGGATATAGAAAAGAAAGGTGGCCACTG-GAGTGACCAAACAC-ACACCTTTTCCACATTAAGCATTAAAAGATTTTATTGTTCTTTTCTTTGAGCTTCATAAAG--GTATGGGAATTTTCTCAGACACGAAAT----------GCGTTGGCACATGGAAAGGAG--ATGTGGAAGCCCTGATGAAATTCTAACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCCATCCTTGGGTCACAGCAGCTGAGGCACATCTTGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTTCTAAGTCCCTTTCTGGAGGACCTAATAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGTCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACC
s HiC_scaffold_1 108401778 1203 - 233722169 CAGCACATGACTACA------AttggaaagggaaaggaaaggtgaAAAATGTGAGTTAACAAAAATTATACGGGTTCCAGGTTAGGCAATCAAAG-TTTTATTCCACTTTTCCTTGTGCCTTGTTAAGCATTGTAAGgtttttcacagaaaagaaacagtatgTTTAGTAATGGGAAATGAAAAATAGGCATTTTGTAGCCTT-ATGAAG---------ACAATAAGTT------------------GCCA-------TGGTGTCACAG--------------------------------------TCAGGCTGTAGGAT-----CTGCGCTTGTGCCTTTGACAAGTTTTGGAGG----AATCCAGGTTGAAGAAG----CAGATAAAAGCATCAGGGGT--------------------------------------CACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTCCC

a score=39130
s chr3            98445627 1282 + 160039680 TGGATATAGAAAAGAAAGGTGGCCACTGGAGTGACCAAACACACACCTTTTCCACATTAAGCATTAAAAGATTTTATTGTTCTTTTCTTTGAGCTTCATAAAGGTATGGGAATTTT-CTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATG-TGGAAGCCCTGATGAAATTCTAACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCCATCCTTGGGTCACAGCAGCTGAGGCA---CATCTTGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTT--CTAAGTCCCTTTCT----------GGAGGAC-----CTAATAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGC--GGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACT-GAGCTGCTGTAG--ATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGTCCATAGGAAGCCCACAATCATTGCTAAGAAATAA
s HiC_scaffold_1 108297966 1243 - 233722169 tggaaatggaaggaaaatgt----ATATTATTAACAAAACTCATACTTTCTTTATATTAGTCCT--Aaagcatttattgtttttcc---taAGCTTTATGCAAA-ATGAgagtttttcaaagaaaagaaacaatttaaca-aTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCA-----AACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCTTGTTT-TTCCTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTGGCC--------------ACTGCTTGAAAAGCAG---TGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCC--TCTGAGTCCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGA---TTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=44947
s chr3            98445934 1044 + 160039680 GCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGT--------------TAAGAGTTGGA-TTGTTTCTAAGTCCCTTTCTG--------------GAGGACCTAA--------------TAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGTCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACCGTGGCAATGGGGTCAGACTGGTCTCCATCCCAAATT-----CCGTGAAATGGCCAATAGAG
s HiC_scaffold_1 108528337 1076 - 233722169 GCATCTTGTGGCC----------TTAGGAAGATGGTAAGTTGCGATTGTGTCAGAGGAGCCTGTAGGACTTGGGCTTGTTCCTTTGTCACTTTCTGAACAAAGACATATGGAGGAAGTAAATTAAACTTCCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTCCC----CCAT-GGATAAGAATCATGTTCATATCCAGTTCCTCCCCATGAGGTGATTAATACAG

a score=37540
s chr3            98446028 861 + 160039680 CACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGAT-GCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGTCCATAGGAAGCCCA
s HiC_scaffold_1 108360957 859 - 233722169 CACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=42813
s chr3            98446033 889 + 160039680 AGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCAATGGAGAATGTGGCATCTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGTTAG-ACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGTCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACC
s HiC_scaffold_1 108440445 892 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCC

a score=14233
s chr3            98449947 945 + 160039680 GTGTCTGGTCCATAGATGCAGTGG-GTTGATGGACATCAAGTATTTGGAGATGGAGTCA-ATTCACTTTGGTGTGGAGAGGC----AGGAGAACTTTCCTGGCAGTTGGGGTGTCATGGGTGTGGCTTTATAATCTTTCAGTGATACTGACTACACCTGG-----TGTCA---CTCTTTATCTCTCTG--TCTGGTTTCTTTTTCTAAACCCTGAGGACAATAGTCCTGAGTTCTG-CAACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAGCACAGCAGGTATTCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCCACCTGTTCTAACTCTTCCTCTAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAGGAGGC--CTTTCTACAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGTGTTTGTA---GGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAA--------AAAGAGAGTTATGGGAAGCTCCT-AAATGCATTAAAGCAACTGGAGAAGTGATGGCACAAAAATGTA-AAGAGGGAGAATAGGATTT
s HiC_scaffold_1 108301487 843 - 233722169 GCACCTGGTCCAGGGGAAGAGTTACATGGGTGAATAACAAAAGTGAAGAGTTGAAATCAGATAGATCTTGGAATGGAGGAGCTGTAGGCAGAGCTTTCTTGGTCTTTGAA-TCACACAGGTGTGAATTTACATTCTGGTCATCTTAGTGACTACAGCGGGGGCTTTGGcaagtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAATGG-----AGCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGG----TCAAAGCCCAACATCAGTTCCATGGTGgggc-ttctctttccctc---------------------------tccatcTGTT----------------GTGTT-----------GTCTTCCTTTGCAAC-------TGGCTTTCA---------------------------GGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGT------------------GTGTCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgttt-------------cagttttctgagaaagG------ATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGG-ACAGTTACATACAAGATGAAAAATCAGACTT

a score=10632
s chr3            98449960 679 + 160039680 AGATGCAGTGGGTTGATGGACATCAAGTATTTGGAGATGGAGTC-AATTCACTTTGGTGTGGAGAGGC----AGGAGAACTTTCCTGGCAGTTGGGGTGTCATGGGTGTGGCTTTATAATCTTTCAGTGATACTGACTACACCTGG------TGTCACTCTTTATCTCTCTGTC-----TGGTTTCTTTTTCTAAACCCTGAGGACAATAGTCCTGAGTTCTG-CAACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAGCACAGCAGGTATTCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCCACCTGTTCTAACTCTTCCTCTAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374146 586 - 233722169 AGGTACAGTGTG--GATGGATATCAGAAGTGCAGGATTGGAGTCTCGTCTACCTCAGAATGCAGGAGTTGTTAGAAGATCTGGCTTGGGAGTTAA------ATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGAC----CAGAACCCAGAAG------CAGTGGAGCTTCTCCTCTTTTTGCTAC---------------------TTCACCTACC-------------------------------------ATCATTTTCCCTACCTGT---TGCATCTCATGCTCCAGC---------------------TATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTTGGTG--------GGAACTTT-----TTAAAGTGATGGTTATCTTTGACTTCAAGGATA

a score=18647
s chr3            98450293  959 + 160039680 CTCTAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTG---TCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGGACAGAAA--GCAGGGTCTTTGGAAGCTTTGTGCATGGG-ATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACT-GGAGAGGAGGCCTTTCTACAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGTGTTTGTAGG---GAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAA-------AGAGAGTTATGGGAAGCTCC--TAAATGCATTAAAGCAACTGGAGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA-TAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGTTAGGGGGTGGGTAATAAACTGCCTGG--------TGTGAAGACATACGAGAAATATGGATAAGCAACAGGTTAACCAGATTATGTTCTCTGGAGTTCCAGTGAGG-------AGGATCCAGAAG-ATGGACACAAAAATGGACA----------------TTTTAGCTTTGCCCTGACAGGTCT-----TGAAACTTTCTGAGTCTAGGCTGTTTATAA-----ATGAAGTGTTAGCCCTA-------TTACA-----------GAGAAGCAATAGGAGTCTCTGTGAGAGAACCCAGAATAGACTCAAATGA-GGGTTTAGGTGAGCATTTCTTAT
s HiC_scaffold_1 108444643 1013 - 233722169 CTGCAGGTGTTCCACA-GGGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGT----------TGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGAT--AAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGTTGTGTTTG----ATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGG---------------CTGTGAAAAGGGTACTCACATTGGTACCACAATGTCCAGTGACCTTTTGTGaggatacaaaagaaaacaagac-tgcAGTGCACTAATCAGAATGTCTCTGCCAGAATTCATAAGAGggcaaaccaggtcccagcagtaggaagagaagaagggagaacCACAAGCCATCAGTTTCAGGCTTTCCCATAACAGGTCTGGGTATGTAACTTT----GTCTTGGATGTGCAGAAAACTGATTAAGC-TCATCCCTAGTGTTTCCTACATGTGTAACTAGGAGGAGGTAAGTGAG-CCATGCCAGAGAATTCAGGATTGGCTCTTCTGATGGGCtttattgaaaatgttttat

a score=16697
s chr3            98450297 656 + 160039680 AGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTC--TATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGG-TACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAG-GAGGCCTTTCTACAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGTGTTTGTAGGGAATGAGGAAGCATTTATATCTGCACC--ATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAA----AAGAGAGTTATGGGAAGCTC--CTAAATGCATTAAAGCAACTGGAGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA-TAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA-----AGGAGAAACAGAGCTAGAGTCCTG
s HiC_scaffold_1 108405601 681 - 233722169 AGGTGCTCTACAGGGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT---TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAATCTCTGATGAGTATCATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgaggcagtgtTGTG

a score=15925
s chr3            98450316 843 + 160039680 CTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATC-TTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACA-CTGGAGAGGAGGCCTTTCTACAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGTGTTTGTAGGGAATGAGGAAGCA---TTTATATCTGCACCATCCCT------TTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAAAG---------AGAGTTATGGGAAGCTCC--TAAATGCATTAAAGCAACTGGAGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA--TAGGATTTAATT--GATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGTTAGGGGGTGGGTAATAAACTGCCTGGTGTGAAGACATACGAGAAATATGGATAAGCAACAGGTTAACCAGATTATGTTCTCTGGA---------------------GTTCCAGTGAGGAGGATC--CAGAAGATGGACACAAAAATGGACATTTT--AGCTTTGCCCTGACAGGTCTTGAAACTT-TCTGAGTCTAGGCTGTTTATAAA
s HiC_scaffold_1 108389252 889 - 233722169 CTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATC----CCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCTCTGATGAGTATCATGAA---AAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG---ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggaggaagagaggcagggCTGTGAATAGGATAC---TCACATTGTTATCATGATGTTCAA-----TGTCCTTTGTGaggacataaaagaaaacaagac-tgcaattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagc-agtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAA

a score=21405
s chr3            98450319 1292 + 160039680 CCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATC-TTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGT-CTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTC-CTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACA-CTGGAGAGGAGGCCTTTCTACAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGTGTTT----GTAGGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAAA--GAGAGT-TATGGGAAGCTCC--TAAATGCATTAAAGCAACTGGAGAAGTGATGGCACAAAAATGTAAAGAGGGAGA-ATAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGTTAGGGGGTGGGTAATAAACTGCCTGGTGTGAAGACATACGAG-AAATATGGATAAGCAACAGGTTAACCAGATTATGTTCTCTGGAGTTCCAGTGAGG-------AGGATCC---------------AGAAGATGGACACAAAAATGGACATTTT--AGCTTTGCCCTGACAGGTCTTGAAACTTTCTGAGTCTAGGCTGTTTATAAA------TGAAGTGTTAGCCCT-------------------ATTACAGAGAAGCAATAGGAGTCTCTGTGAGAGAACCCAGAATAGACTCAAATGA-GGGTTTAGGTGAGC--ATTTCTTATCAGATAGATTC-----------------TTGTAAATGAGGCAACCTCAAGTGGAC------CACACTGTGGGCTTGAAGTCAGTGGCAGTGTTTTCAGGTTCCTT----------TGAAATTTACTG---------AATGATACTGGCAATCACAATATCATACAAATAAGCTC---ACAAAATTAACATGTGCC-CTTGCAGCCTTTACAAATACTCCACCCTGGCTTTAGGTTCATATTTT----GCACATGATTTTTTTGGTTTGCTC-TTTCCTTTCCCAACCATGTCATCATATCAGGCATTCTGA--------TATCCCAGGAATAGGTTGGG-----GAATCACAGAAGGCTCCAGGAACATGCCTCAGGACACACATCTCCCTAGTGAAGGCTCTAATGTTCCTCTGCCTCCTTC
s HiC_scaffold_1 108531395 1409 - 233722169 CCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCA-CACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA-AGTCGACA-GtacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATGAACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAG-ATAGTTTGATACAGAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAGGCAGGCCTGTGAATAGGACACTTACCTTGGCGCC---AGGATGTCCAATATACTGT----TGTGAGGATATAAGAGAAAACAGGGCTA--CAATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGAGCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCAGAAAAATCAGTTAAGC-TCATCCCTAGTGTTTCCCACTTGTGTGACTAGGAGGAGGTGAGTGGAGTCCTACCAAGAGAATTCCAGTTGAGCTCTTTTGATGGACTTAATTAATCTTATTGTGTGTCAAATAATATCAATATCCAGCATGCATGATACAAATGAGTCATCTACAAGTGATTTCCATACAAGCTGTCTAGTCCAGGACAGTGGCTGCAACATGAAGGTGTCCATATGACAAGTGAGACTCACCTGTGTGATGCAATGATACTGACAGTGACAAGACCATCCTAATTTAATCCAGAAAAACCCATCCTGTGCCACACATAGTATCCATCAACACTCGACATTTGTTTGTGCTGCACAGTTTACAAGCAAATGA-----ACAGttgactcattttttttcctaaagaccTTGTTGGAG-AGGAATTCTGATTCTGCTTTCTCACCTGCTTagctgaggaaactgaagctcagcaGGCTCTAGGGACCCAACTGAGTACAAA----GTGGCAGTGAGGTCTCAActcctctcctgcctccttc

a score=13745
s chr3            98450340 438 + 160039680 TTTTCATTTTCCAACCTGCTCCATATCTTCCCT---GGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTGCTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG-ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGAT-GGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAG----GAGGCCTTTCTACAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGTGTTTGTAGGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCA
s HiC_scaffold_1 108365765 444 - 233722169 TTGTCCTATTCCTGCCTGCT--GTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGCAG-GCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGA---TGTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=9323
s chr3            98456361 207 + 160039680 CTTAGCCCC-TATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAG-ATAGTTGAGGGTGCAGATGTGAT
s HiC_scaffold_1 108534960 209 - 233722169 CTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGT

a score=8684
s chr3            98456364 544 + 160039680 AGCCCCTATATCACTTACTGGACAATT----CCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTC-TGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTC-AACACAGGAATCAGATAGTTGAGGGTGCAGATGTGAT-ATAAGGTACTCCTGT------------GGATTGATTCAATGTGTACAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAAAAAAAAATGTCCTGAAGCTAACTTCACCCATTCCTCTCATAAGAC--ATCACGTCTCTGATCCCAAATCTTGTGGGATGTT----CTATAAGAAGCAAGGAAAAACAGAAAATCAAAACCAGAGTACACATATGCACTGGACACCAGAAATGCAATCTCTAGCTTAGGTTATCTTTTACCCTGAGGTACT------------GCATTAGTCTGTGCCCAAAGGTTGTCTCTCTCACCTTAGATGCTAATTACAAACTCT-GGATGTCTTACCTGTGCTTATGAGAAAC
s HiC_scaffold_1 108302917 534 - 233722169 AGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAA---GTGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAA--GGCACAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGTG-------ATGACACAGAGAAAAAACTACTCAAACTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGC-AGATATTTTCCCCACCAGATGTGA----------AAAATCATTGCTACAGTA----------------AGCAGCAGTTC--TATCTGACCCCGATTATCT-------GGAGAGACTCAGATCATATAGGGAAAAGCCTTTGTTCACCTTTGTTCTGGCACAGTTCAGATGCCAGTTACAACCTCCAGGTTATTTTATCTGTGCTTCTGAGCAAC

a score=9520
s chr3            98456364 283 + 160039680 AGCCCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGTTGAGGGT-GCAGATGTGATATAAGGTACTCCTGTGGAT----------------TGATTCAATGTGTACAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAAAAAAAAAT
s HiC_scaffold_1 108393329 293 - 233722169 AGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAGGACACACAAACTTCTTCTA-------ATGTCAGAGAGAGGAAT

a score=9798
s chr3            98456364 226 + 160039680 AGCCCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGTTGAGGGT-GCAGATGTGATATAAGGTACTCCT---GTGGATTGA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTAA

a score=10581
s chr3            98456375 264 + 160039680 CACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGT--TGAGGGTGCAGATGTGATATAAGGTACTCCTGT---GGATTGA------------TTCAATGTGTACAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAA
s HiC_scaffold_1 108410535 280 - 233722169 CACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGAT-CAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAGGGCACATAAAGTGCTTATAATATCAGACAGGGGAA

a score=8526
s chr3            98468652 188 + 160039680 TCCACCTTCTTGTGCTCCTCCCGGTAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCATTTCCATTCCCAG---TGCCCGTCCGGCTCACGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTG
s HiC_scaffold_1 118339259 188 - 233722169 TCTTTCTTCTTGTGCTCCTCATGGCAAGTTTGTAGAAAGAATATACACAATGACACTTT-CTCCTCAGCTTTGTAGGCTGTCCTCTGCCCATGTTTCgttgtttttcct--ttgtgagGCACAGAGCTGCCCATTCAGCCCTTGCTTGCCCTGGAACTGTCCCTACAGAACTCGAGGTGTTGCAAGGGCTG

a score=7731
s chr3            98469357 259 + 160039680 AGGCTTTCAGTGACTTGATTAAGACTCTAAGAT-CCTCCGTATCAAAGAGAAGCAGCAGGACCCAGGTTGTGTGCCT------------------GTCCCTGCTAGAGGACCTGATAA-------------CACCCAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTTGCTTGGCTTCCTGCCAGTTGACAAGTGGCTCGTAGCCCAGATCTTGCTGAGcttgctt
s HiC_scaffold_1 108401957 290 - 233722169 AGGCATTTTGTAGCCTTATGAAGACAATAAGTTGCCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCT-TGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTT

a score=6908
s chr3            98469448 168 + 160039680 CCTGATAACACCCAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTTGCTTGGCTTCCTGCCAGTTGACAAGTGGCTCGTAGCCCAGATCTTGCTGAGcttgctt
s HiC_scaffold_1 108528456 168 - 233722169 CCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTT

a score=6267
s chr3            98469461 155 + 160039680 AGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTTGCTTGGCTTCCTGCCAGTTGACAAGTGGCTCGTAGCCCAGATCTTGCTGAGcttgctt
s HiC_scaffold_1 108440445 155 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTT

a score=29413
s chr3            98470141 736 + 160039680 CTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAG--GTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGATGCTCTTCCTCCTGGCCATT-TGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATT-CAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAA
s HiC_scaffold_1 108298481 728 - 233722169 CTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAG-TTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=35831
s chr3            98470143 742 + 160039680 TGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGATGCTCTTCCTC-CTGGCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAAGACAAAGG
s HiC_scaffold_1 108528610 742 - 233722169 TGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGG

a score=34133
s chr3            98470144 751 + 160039680 GCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGTCAG-GCCATGTACTTTCATGATGCTCTTCCTCCT-GGCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAAGACAAAGGGCCACTGTGG
s HiC_scaffold_1 108440587 755 - 233722169 GTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCCCATGG

a score=34756
s chr3            98470144 741 + 160039680 GCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGATGCTCTTCCTC-CTGGCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAAGACAAAGG
s HiC_scaffold_1 108402234 742 - 233722169 GTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGG

a score=30220
s chr3            98470146 711 + 160039680 TGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGAT-GCTCTTCCTCCTG-GCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCA
s HiC_scaffold_1 108361106 710 - 233722169 TGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=11325
s chr3            98472713 588 + 160039680 GTGGATGGAAATCAAGTATGTGGAGATGGAGTCCAGTCACATAGTTGAGAAGGGACAGGAGAATGTT------CCAGGCATTGAGAATACACTGGATGTGACTTTATAAATATTTTCTCCTACTG-------------------------TTCATTCCTCTCTCTATAT--ATTTTTTCTTTTAAACACCAAGGTCAAGGGTCCTGATTTCTGCCCTC------TGGTCAGCAAGGACATACATCTGGCCTAGGCAGAATACAGCAAGTATCCCACTATTCCTCCAGTTGTTCCAAAGTAGGGGCTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAG-TACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374155 577 - 233722169 GTGGATGGATATCAGAAGTGCAGGATTGGAGTCTCGTC---TACCTCAGAATG--CAGGAGT-TGTTAGAAGATCTGGC-TTGGGAGTTAAATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAA----ATGCACTTGGAC----CAGAACCCAGAAGCAGTGGAGCTTCTCCTCTTTTTGCT-----------ACTTCACCTACCATCAT--------------TTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT---------GGTGGGAACTTTTTA----AAGTGATGGTTATCTTTGACTTCAAGGATA

a score=11119
s chr3            98472831 698 + 160039680 GTTCATTCCTCTCTCTATATATTTTTTCTTTT---AAACACCAAGGTCAAGGGTCCTGATTTCTGCCCTCTGG------TCAGCAAGGACATACATCTGGCCTAGGCAGAATACAGCAAGTATCCCACTATTCCTCCAGTTGTTCCAAAGTAGGGGCT-----TCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGT--GGAGAGGAGGGCTTTCTATAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGCAGTTGTA---GAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCAC-TGTGCCTTACACAATACGATGG--------AATTATGGGAAATCCCT-ACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATCA
s HiC_scaffold_1 108301657 649 - 233722169 gtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAATGG-----AGCTCTGTCCATTGGAAGTGATGAGCAA----ATGCACCTGG----GTCAAAGCCCAACA-----------------TCAGTT---CCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTCCTTTGC-AACTGGCTTT---------CAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttc-------------agttttctgagaaag------GATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTA

a score=13787
s chr3            98472955 573 + 160039680 CTCCAGTTGTTCCAAAGTAGGGGCTTCCCTCACCAACCTG---TCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGG-ATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGT-GGAGAGGAGGGCTTTCTATAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCACT-GTGCCTTACACAATACG-------ATGGAATTATGGGAAA--TCCCTACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATC
s HiC_scaffold_1 108444643 583 - 233722169 CTGCAGGTGTTCCACAG-GGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGTTGCTCTA----------CCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGA--TAAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAGATAGTC

a score=14484
s chr3            98472958 486 + 160039680 CAGTTGTTCCAAAGTAGGGGCTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGC---TCCACATTA-TCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGGACACAAA--GCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGTGGAGAGG--AGGGCTTTCTATAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAA
s HiC_scaffold_1 108405600 501 - 233722169 CAGGTGCTCTACAG-GGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATA-TGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT-TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAA

a score=13688
s chr3            98472978 553 + 160039680 CTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCC-TAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAG-TGGAGAGGAGGGCTTTCTATAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCT------TTGTAGAAAATGCATCTGAGCAGGAAGATGCCACTGTGCCTTACACAATACGATG--------GAATTATGGGAAATCCC--TACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATCAGA
s HiC_scaffold_1 108389252 578 - 233722169 CTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACT-TTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCT-CTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAGATAGTTGGA

a score=14813
s chr3            98472980 465 + 160039680 TCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTA-TCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAG-TGGAGAGGAGGGCTTTCTATAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGCAGTT----GTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAG
s HiC_scaffold_1 108531394 474 - 233722169 TCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATAAGTCGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAG

a score=14026
s chr3            98473002 438 + 160039680 TTTTCATTTTCTAGCCTGCTCCACATTATCCT-AGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG-ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGAT-GGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGTGGAGA--GGAGGGCTTTCTATAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCA
s HiC_scaffold_1 108365765 444 - 233722169 TTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGA-GCAGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGAT-GTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=13504
s chr3            98484875 687 + 160039680 TTAAAGATTCCTTGATCCAACTTATTACTGA-GTTGGAGACATTTGTTCTATTTATTTCCTGGGGAATTGTGGTCAAAAGCTAGCTACTTTTGCTGTCTTTAATAAGCAAAACTCGAAGAAGATAATGAGCTTAAATGACTT---AGTTCTGAGGCAGGAGAAGGTGAGCACTTAATCCTTTAAGCCACATGGTCTCTTTTACAGTCTAGTAACTGTACATATATGTGATAAATGATtatctatctatctatctatctatccatcCCAATGCTCATAGACAATCTGAACTATGTTTCTGATGTTTGTGCACACTTTATTttttgttttttcaagccagggtttctgtgtgtagtcctggctgtcctggaactcactatgtatcccaggcttgcctctaactcagaaatatgcatgcctatgcctcccaaatgctgggattaaagcatgggccaccactgcccagctTGTGCACACTTTCCATTTTAGTGCTATTTTACATCTCTTTGTTAAAATAGTAAATAATTTGATGATCCCAAGAGTACCAGATTCTGTG--AGTGTGCTTGTTTATTTGAGTACTGCCCTGTTTTCA---TGTTTCA---------GGTTCCTTGAACAGAATTCTGGCATCCAGCAACCAATATGAGCTATTTGTCATTAAATCCCTACCAGTATTTTATCATATCATCCTTCTTTATT
s HiC_scaffold_1 108285392 502 - 233722169 TTAAGGATTTCTTCCTTCAAATCATTAATGGTGATAGCAGCAAGTATATTATTTGTTTCTTGGGGAATT-TGGCCAAGA-----------------CCTGTGCTAAGCAAAACCTAAAGCAGTTAA-AAGTTTGATTAAATCTTGAGTTCTGGGTTGGAAGGAGATAAACACTTAACCCCTTGAGCTGTATGGTCTCTTT-ACAGTCAAAAGACTGTGTATGTATGTGAAAAGGTACAAATTAAGGATTTGT------------------GTTCATAGACAATCTGAACTGTGTTTCTG--GTTTATGCACACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCACTGTAATG--ACTTTACATCTGTTTGTTAAAATACTGACTAATTTAATGCTCCTAAGAGAAACAGGTTTTGTGTGAGTGTGTTTATGTATATGAGAATTGCCTTGTTTTGGggttgttttatttaatattggTTCTTTGGACAGTATTCTGGTGTTCAGCAACAAATACGGAATGTTGGTCATTAAATCCGTATCAGTCTTTCAc--tgttatttttccttatt

a score=44597
s chr3            98499001 1317 + 160039680 CAGCAC-TGACTATGGACTTCACTGGATATAGAAAAGAAAGGTGGCCACTG-GAGTGACCAAACAC-ACACCTTTTCCACATTAAGCATTAAAAGATTTTATTGTTCTTTTCTTTGAGCTTCATAAAG--GTATGGGAATTTTCTCAGACACGAAAT----------GCGTTGGCACATGGAAAGGAG--ATGAGGAAGCCCTGATGAAATTCTAACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCTATCCTTGGGTCACAGCAGCTGAGGCACATCTTGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTTCTAAGTCCCTTTCTGGAGGACCTAATAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACC
s HiC_scaffold_1 108401778 1203 - 233722169 CAGCACATGACTACA------AttggaaagggaaaggaaaggtgaAAAATGTGAGTTAACAAAAATTATACGGGTTCCAGGTTAGGCAATCAAAG-TTTTATTCCACTTTTCCTTGTGCCTTGTTAAGCATTGTAAGgtttttcacagaaaagaaacagtatgTTTAGTAATGGGAAATGAAAAATAGGCATTTTGTAGCCTT-ATGAAG---------ACAATAAGTT------------------GCCA-------TGGTGTCACAG--------------------------------------TCAGGCTGTAGGAT-----CTGCGCTTGTGCCTTTGACAAGTTTTGGAGG----AATCCAGGTTGAAGAAG----CAGATAAAAGCATCAGGGGT--------------------------------------CACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTCCC

a score=39150
s chr3            98499023 1282 + 160039680 TGGATATAGAAAAGAAAGGTGGCCACTGGAGTGACCAAACACACACCTTTTCCACATTAAGCATTAAAAGATTTTATTGTTCTTTTCTTTGAGCTTCATAAAGGTATGGGAATTTT-CTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATGAGGAAGCCCTGATGAAA--TTCTAACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCTATCCTTGGGTCACAGCAGCTGAGGCA---CATCTTGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTT--CTAAGTCCCTTTCT----------GGAGGAC-----CTAATAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGC--GGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACT-GAGCTGCTGTAG--ATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAA
s HiC_scaffold_1 108297966 1243 - 233722169 tggaaatggaaggaaaatgt----ATATTATTAACAAAACTCATACTTTCTTTATATTAGTCCT--Aaagcatttattgtttttcc---taAGCTTTATGCAAA-ATGAgagtttttcaaagaaaagaaacaatttaaca-aTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCAC-TATAAGAGGCCATAAATAATTCA-----AACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCTTGTTT-TTCCTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTGGCC--------------ACTGCTTGAAAAGCAG---TGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCC--TCTGAGTCCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGA---TTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=45209
s chr3            98499330 1044 + 160039680 GCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGT--------------TAAGAGTTGGA-TTGTTTCTAAGTCCCTTTCTG--------------GAGGACCTAA--------------TAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACCGTGGCAATGGGGTCAGACTGGTCTCCATCCCAAATT-----CCGTGAAATGGCCAATAGAG
s HiC_scaffold_1 108528337 1076 - 233722169 GCATCTTGTGGCC----------TTAGGAAGATGGTAAGTTGCGATTGTGTCAGAGGAGCCTGTAGGACTTGGGCTTGTTCCTTTGTCACTTTCTGAACAAAGACATATGGAGGAAGTAAATTAAACTTCCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTCCC----CCAT-GGATAAGAATCATGTTCATATCCAGTTCCTCCCCATGAGGTGATTAATACAG

a score=37802
s chr3            98499424 861 + 160039680 CACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGAT-GCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCA
s HiC_scaffold_1 108360957 859 - 233722169 CACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=43075
s chr3            98499429 889 + 160039680 AGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGTTAG-ACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACC
s HiC_scaffold_1 108440445 892 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCC

a score=14242
s chr3            98503322 945 + 160039680 GTGTCTGGTCCATAGACGCAGTGG-GTTGATGGACATCAAGTATTTGGAGATGGAGTCA-ATTCACTTTGGTGTGGAGAGGC----AGGAGAACTTTCCTGGCAGTTGGGGTGTCATGGGTGTGGCTTTATAATCTTTCAGTGATACTGACTACACCTGG-----TGTCA---CTCTTTATCTCTCTG--TCTGGTTTCTTTTTCTAAACCCTGAGGACAATAGTCCTGAGTTCTG-CAACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAGCACAGCAGGTATTCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCCACCTGTTCCAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAGGAGGC--CTTTCTACAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGTGTTTGTA---GGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAA--------AAAGAGAGTTACGGGAAGCTCCT-AAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTA-AAGAGGGAGAATAGGATTT
s HiC_scaffold_1 108301487 843 - 233722169 GCACCTGGTCCAGGGGAAGAGTTACATGGGTGAATAACAAAAGTGAAGAGTTGAAATCAGATAGATCTTGGAATGGAGGAGCTGTAGGCAGAGCTTTCTTGGTCTTTGAA-TCACACAGGTGTGAATTTACATTCTGGTCATCTTAGTGACTACAGCGGGGGCTTTGGcaagtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAATGG-----AGCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGG----TCAAAGCCCAACATCAGTTCCATGGTGgggc-ttctctttccctc---------------------------tccatcTGTT----------------GTGTT-----------GTCTTCCTTTGCAAC-------TGGCTTTCA---------------------------GGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGT------------------GTGTCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgttt-------------cagttttctgagaaagG------ATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGG-ACAGTTACATACAAGATGAAAAATCAGACTT

a score=10956
s chr3            98503335 679 + 160039680 AGACGCAGTGGGTTGATGGACATCAAGTATTTGGAGATGGAGTC-AATTCACTTTGGTGTGGAGAGGC----AGGAGAACTTTCCTGGCAGTTGGGGTGTCATGGGTGTGGCTTTATAATCTTTCAGTGATACTGACTACACCTGG------TGTCACTCTTTATCTCTCTGTC-----TGGTTTCTTTTTCTAAACCCTGAGGACAATAGTCCTGAGTTCTG-CAACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAGCACAGCAGGTATTCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCC-ACCTGTTCCAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374146 586 - 233722169 AGGTACAGTGTG--GATGGATATCAGAAGTGCAGGATTGGAGTCTCGTCTACCTCAGAATGCAGGAGTTGTTAGAAGATCTGGCTTGGGAGTTAA------ATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGAC----CAGAACCCAGAAG------CAGTGGAGCTTCTCCTCTTTTTGCTAC-------TTCACCTACCATCATTTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTG----------------------------------------------------------------------------CCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTTGGTG--------GGAACTTT-----TTAAAGTGATGGTTATCTTTGACTTCAAGGATA

a score=18902
s chr3            98503668  959 + 160039680 CTCCAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTG---TCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGGACAGAAA--GCAGGGTCTTTGGAAGCTTTGTGCATGGG-ATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACT-GGAGAGGAGGCCTTTCTACAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGTGTTTGTAGG---GAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAA-------AGAGAGTTACGGGAAGCTCC--TAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA-TAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGG--------TGTGAAGACATAAGAGAAATATGGATAAGCAACAGGTTAACCAGATTATGTTATCTGGAGTTCCAGTGAGG-------AGGATCCAGAAG-ATGGACACAAAAATGGACA----------------TTTTAGCTTTGCCCTGACAGGTCT-----TGAAACTTTCTGAGTCTAGGCTGTTTATAA-----ATGAAGTGTTAGCCCTA-------TTACA-----------GAGAAGCAATAGGAGTCTCTGTGAGAGAACCCAGAATAGACTCAAATGA-GGGTTTAGGTGAGCATTTCTTAT
s HiC_scaffold_1 108444643 1013 - 233722169 CTGCAGGTGTTCCACA-GGGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGT----------TGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGAT--AAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGTTGTGTTTG----ATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGGCTGTGAAAAGGGTACTCACA---------------TTGGTACCACAATGTCCAGTGACCTTTTGTGaggatacaaaagaaaacaagac-tgcAGTGCACTAATCAGAATGTCTCTGCCAGAATTCATAAGAGggcaaaccaggtcccagcagtaggaagagaagaagggagaacCACAAGCCATCAGTTTCAGGCTTTCCCATAACAGGTCTGGGTATGTAACTTT----GTCTTGGATGTGCAGAAAACTGATTAAGC-TCATCCCTAGTGTTTCCTACATGTGTAACTAGGAGGAGGTAAGTGAG-CCATGCCAGAGAATTCAGGATTGGCTCTTCTGATGGGCtttattgaaaatgttttat

a score=17238
s chr3            98503671 725 + 160039680 CAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTC--TATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGG-TACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAG-GAGGCCTTTCTACAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGTGTTTGTAGGGAATGAGGAAGCATTTATATCTGCACC--ATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAA----AAGAGAGTTACGGGAAGCTC--CTAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA-TAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA-----AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGGTGTGAAGACATAAGAGAAA
s HiC_scaffold_1 108405600 743 - 233722169 CAGGTGCTCTACAGGGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT---TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAATCTCTGATGAGTATCATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgaggcagtgtTGTGAATAGGACACTCACCTTGGCACC---AGGATGTCCATTATACTAT----TGCAAAGATATAGTAGAAA

a score=15980
s chr3            98503691 843 + 160039680 CTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATC-TTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACA-CTGGAGAGGAGGCCTTTCTACAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGTGTTTGTAGGGAATGAGGAAGCA---TTTATATCTGCACCATCCCT------TTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAAAG---------AGAGTTACGGGAAGCTCC--TAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA--TAGGATTTAATT--GATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGGTGTGAAGACATAAGAGAAATATGGATAAGCAACAGGTTAACCAGATTATGTTATCTGGA---------------------GTTCCAGTGAGGAGGATC--CAGAAGATGGACACAAAAATGGACATTTT--AGCTTTGCCCTGACAGGTCTTGAAACTT-TCTGAGTCTAGGCTGTTTATAAA
s HiC_scaffold_1 108389252 889 - 233722169 CTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATC----CCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCTCTGATGAGTATCATGAA---AAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG---ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggaggaagagaggcagggCTGTGAATAGGATACTCACATTGTTATCATGATGTT--------CAATGTCCTTTGTGaggacataaaagaaaacaagac-tgcaattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagc-agtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAA

a score=22033
s chr3            98503694 1292 + 160039680 CCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATC-TTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGT-CTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTC-CTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACA-CTGGAGAGGAGGCCTTTCTACAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGTGTTT----GTAGGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAAA--GAGAGT-TACGGGAAGCTCC--TAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGA-ATAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGGTGTGAAGACATAAGAG-AAATATGGATAAGCAACAGGTTAACCAGATTATGTTATCTGGAGTTCCAGTGAGG-------AGGATCC---------------AGAAGATGGACACAAAAATGGACATTTT--AGCTTTGCCCTGACAGGTCTTGAAACTTTCTGAGTCTAGGCTGTTTATAAA------TGAAGTGTTAGCCCT-------------------ATTACAGAGAAGCAATAGGAGTCTCTGTGAGAGAACCCAGAATAGACTCAAATGA-GGGTTTAGGTGAGC--ATTTCTTATCAGATAGATTC-----------------TTGTAAATGAGGCAACCTCAAGTGGAC------CACACTGTGGGCTTGAAGTCAGTGGCAGTGTTTTCAGGTTCCTT----------TGAAATTTACTG---------AATGATACTGGCAATCACAATATCATACAAATAAGCTC---ACAAAATTAACATGTGCC-CTTGCAGCCTTTACAAATACTCCACCCTGGCTTTAGGTTCACATTTT----GCACATGATTTTTTTGGTTTGCTC-TTTCCTTTCCCAACCATGTCATCATATCAGGCATTCTGA--------TATCCCAGGAATAGGTTGGG-----GAATCACAGAAGGCTCCAGGAACATGCCTCAGGACACACATCTCCCTAGTGAAGGCTCTAATGTTCCTCTGCCTCCTTC
s HiC_scaffold_1 108531395 1409 - 233722169 CCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCA-CACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA-AGTCGACA-GtacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATGAACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAG-ATAGTTTGATACAGAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAGGCAGGCCTGTGAATAGGACACTTACCTTGGCGCC---AGGATGTCCAATATACTGT----TGTGAGGATATAAGAGAAAACAGGGCTA--CAATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGAGCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCAGAAAAATCAGTTAAGC-TCATCCCTAGTGTTTCCCACTTGTGTGACTAGGAGGAGGTGAGTGGAGTCCTACCAAGAGAATTCCAGTTGAGCTCTTTTGATGGACTTAATTAATCTTATTGTGTGTCAAATAATATCAATATCCAGCATGCATGATACAAATGAGTCATCTACAAGTGATTTCCATACAAGCTGTCTAGTCCAGGACAGTGGCTGCAACATGAAGGTGTCCATATGACAAGTGAGACTCACCTGTGTGATGCAATGATACTGACAGTGACAAGACCATCCTAATTTAATCCAGAAAAACCCATCCTGTGCCACACATAGTATCCATCAACACTCGACATTTGTTTGTGCTGCACAGTTTACAAGCAAATGA-----ACAGttgactcattttttttcctaaagaccTTGTTGGAG-AGGAATTCTGATTCTGCTTTCTCACCTGCTTagctgaggaaactgaagctcagcaGGCTCTAGGGACCCAACTGAGTACAAA----GTGGCAGTGAGGTCTCAActcctctcctgcctccttc

a score=13989
s chr3            98503715 438 + 160039680 TTTTCATTTTCCAACCTGCTCCATATCTTCCCT---GGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG-ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGAT-GGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAG----GAGGCCTTTCTACAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGTGTTTGTAGGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCA
s HiC_scaffold_1 108365765 444 - 233722169 TTGTCCTATTCCTGCCTGCT--GTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGCAG-GCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGA---TGTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=9459
s chr3            98509797 211 + 160039680 GTCCCCCAGCTCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAG-ATAGTTGAGGGTGCAGATGTGAT
s HiC_scaffold_1 108534964 205 - 233722169 GTCCCACAGCTC-------ACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGT

a score=9520
s chr3            98509804 283 + 160039680 AGCTCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGTTGAGGGT-GCAGATGTGATATAAGGTACTCCTGTGGAT----------------TGATTCAATGTGTGCAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAAAAAAAAAT
s HiC_scaffold_1 108393329 293 - 233722169 AGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAGGACACACAAACTTCTTCTA-------ATGTCAGAGAGAGGAAT

a score=9920
s chr3            98509804 226 + 160039680 AGCTCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGTTGAGGGT-GCAGATGTGATATAAGGTACTCCT---GTGGATTGA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTAA

a score=8859
s chr3            98509814 535 + 160039680 TCACTTACTGGACAATT----CCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTC-TGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTC-AACACAGGAATCAGATAGTTGAGGGTGCAGATGTGAT-ATAAGGTACTCCTGT------------GGATTGATTCAATGTGTGCAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAAAAAAAAATGTCCTGAAGCTAACTTCACCCATTCCTCTCATAAGAC--ATCACGTCTCTGATCCCAAATCTTGTGGGATGTT----CTATAAGAAGCAAGGAAAAACAGAAAATCAAAACCAGAGTACACATATGCACTGGACACCAGATATGCAATCTCTAGCTTAGGTTATCTTTTACCCTGAGGCACT------------GCATTAGTCTGTGcccaaaggttgtctctctcaccttagatgctaattacaaactctggattgtcttacctgtgcttatgagaaac
s HiC_scaffold_1 108302927 524 - 233722169 TCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAA---GTGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAA--GGCACAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGTG-------ATGACACAGAGAAAAAACTACTCAAACTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGC-AGATATTTTCCCCACCAGATGTGA----------AAAATCATTGCTACAGTA-------------AGCAGCAGTTCTA-----TCTGACCCCGATTATCT-------GGAGAGACTCAGATCATATAGGGAAAAGCCTTTGTTCACCTTTGTTCTGGCACAGTTCAGATGCCAGTTACAACCTCCAGGTTATTTTATCTGTGCTTCTGAGCAAC

a score=10459
s chr3            98509815 264 + 160039680 CACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGT--TGAGGGTGCAGATGTGATATAAGGTACTCCTGT---GGATTGA------------TTCAATGTGTGCAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAA
s HiC_scaffold_1 108410535 280 - 233722169 CACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGAT-CAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAGGGCACATAAAGTGCTTATAATATCAGACAGGGGAA

a score=8526
s chr3            98522109 188 + 160039680 TCCACCTTCTTGTGCTCCTCCCGGTAAGTTTGCACAAAGAATGCATATGAGGACATTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCATTTCCATTCCCAG---TGCCCGTCCGGCTCACGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTG
s HiC_scaffold_1 118339259 188 - 233722169 TCTTTCTTCTTGTGCTCCTCATGGCAAGTTTGTAGAAAGAATATACACAATGACACTTT-CTCCTCAGCTTTGTAGGCTGTCCTCTGCCCATGTTTCgttgtttttcct--ttgtgagGCACAGAGCTGCCCATTCAGCCCTTGCTTGCCCTGGAACTGTCCCTACAGAACTCGAGGTGTTGCAAGGGCTG

a score=7731
s chr3            98522814 259 + 160039680 AGGCTTTCAGTGACTTGATTAAGACTCTAAGAT-CCTCCGTATCAAAGAGAAGCAGCAGGACCCAGGTTGTGTGCCT------------------GTCCCTGCTAGAGGACCTGATAA-------------CACCCAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTTGCTTGGCTTCCTGCCAGTTGACAAGTGGCTCGTAGCCCAGATCTTGCTGAGcttgctt
s HiC_scaffold_1 108401957 290 - 233722169 AGGCATTTTGTAGCCTTATGAAGACAATAAGTTGCCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCT-TGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTT

a score=6908
s chr3            98522905 168 + 160039680 CCTGATAACACCCAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTTGCTTGGCTTCCTGCCAGTTGACAAGTGGCTCGTAGCCCAGATCTTGCTGAGcttgctt
s HiC_scaffold_1 108528456 168 - 233722169 CCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTT

a score=6267
s chr3            98522918 155 + 160039680 AGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTTGCTTGGCTTCCTGCCAGTTGACAAGTGGCTCGTAGCCCAGATCTTGCTGAGcttgctt
s HiC_scaffold_1 108440445 155 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTT

a score=29413
s chr3            98523618 736 + 160039680 CTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAG--GTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGATGCTCTTCCTCCTGGCCATT-TGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATT-CAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAA
s HiC_scaffold_1 108298481 728 - 233722169 CTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAG-TTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=35831
s chr3            98523620 742 + 160039680 TGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGATGCTCTTCCTC-CTGGCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAAGACAAAGG
s HiC_scaffold_1 108528610 742 - 233722169 TGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGG

a score=34133
s chr3            98523621 751 + 160039680 GCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGTCAG-GCCATGTACTTTCATGATGCTCTTCCTCCT-GGCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAAGACAAAGGGCCACTGTGG
s HiC_scaffold_1 108440587 755 - 233722169 GTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCCCATGG

a score=34756
s chr3            98523621 741 + 160039680 GCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGATGCTCTTCCTC-CTGGCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCACAATCATTGCTAGGAAATAAGACAAAGG
s HiC_scaffold_1 108402234 742 - 233722169 GTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGG

a score=30220
s chr3            98523623 711 + 160039680 TGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTCATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTTCAGCTGTTATTAAGGTGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCGTCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCCCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGATGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGGCCATGTACTTTCATGAT-GCTCTTCCTCCTG-GCCATTTGGACAATCTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACAATGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCTCA
s HiC_scaffold_1 108361106 710 - 233722169 TGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=11325
s chr3            98526190 588 + 160039680 GTGGATGGAAATCAAGTATGTGGAGATGGAGTCCAGTCACATAGTTGAGAAGGGACAGGAGAATGTT------CCAGGCATTGAGAATACACTGGATGTGACTTTATAAATATTTTCTCCTACTG-------------------------TTCATTCCTCTCTCTATAT--ATTTTTTCTTTTAAACACCAAGGTCAAGGGTCCTGATTTCTGCCCTC------TGGTCAGCAAGGACATACATCTGGCCTAGGCAGAATACAGCAAGTATCCCACTATTCCTCCAGTTGTTCCAAAGTAGGGGCTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAG-TACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374155 577 - 233722169 GTGGATGGATATCAGAAGTGCAGGATTGGAGTCTCGTC---TACCTCAGAATG--CAGGAGT-TGTTAGAAGATCTGGC-TTGGGAGTTAAATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAA----ATGCACTTGGAC----CAGAACCCAGAAGCAGTGGAGCTTCTCCTCTTTTTGCT-----------ACTTCACCTACCATCAT--------------TTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT---------GGTGGGAACTTTTTA----AAGTGATGGTTATCTTTGACTTCAAGGATA

a score=11119
s chr3            98526308 698 + 160039680 GTTCATTCCTCTCTCTATATATTTTTTCTTTT---AAACACCAAGGTCAAGGGTCCTGATTTCTGCCCTCTGG------TCAGCAAGGACATACATCTGGCCTAGGCAGAATACAGCAAGTATCCCACTATTCCTCCAGTTGTTCCAAAGTAGGGGCT-----TCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGT--GGAGAGGAGGGCTTTCTATAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGCAGTTGTA---GAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCAC-TGTGCCTTACACAATACGATGG--------AATTATGGGAAATCCCT-ACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATCA
s HiC_scaffold_1 108301657 649 - 233722169 gtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAATGG-----AGCTCTGTCCATTGGAAGTGATGAGCAA----ATGCACCTGG----GTCAAAGCCCAACA-----------------TCAGTT---CCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTCCTTTGC-AACTGGCTTT---------CAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttc-------------agttttctgagaaag------GATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTA

a score=13787
s chr3            98526432 573 + 160039680 CTCCAGTTGTTCCAAAGTAGGGGCTTCCCTCACCAACCTG---TCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGG-ATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGT-GGAGAGGAGGGCTTTCTATAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCACT-GTGCCTTACACAATACG-------ATGGAATTATGGGAAA--TCCCTACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATC
s HiC_scaffold_1 108444643 583 - 233722169 CTGCAGGTGTTCCACAG-GGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGTTGCTCTA----------CCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGA--TAAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAGATAGTC

a score=14484
s chr3            98526435 486 + 160039680 CAGTTGTTCCAAAGTAGGGGCTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGC---TCCACATTA-TCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGGACACAAA--GCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGTGGAGAGG--AGGGCTTTCTATAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAA
s HiC_scaffold_1 108405600 501 - 233722169 CAGGTGCTCTACAG-GGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATA-TGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT-TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAA

a score=13688
s chr3            98526455 553 + 160039680 CTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCC-TAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAG-TGGAGAGGAGGGCTTTCTATAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCT------TTGTAGAAAATGCATCTGAGCAGGAAGATGCCACTGTGCCTTACACAATACGATG--------GAATTATGGGAAATCCC--TACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATCAGA
s HiC_scaffold_1 108389252 578 - 233722169 CTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACT-TTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCT-CTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAGATAGTTGGA

a score=14813
s chr3            98526457 465 + 160039680 TCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTA-TCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAG-TGGAGAGGAGGGCTTTCTATAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGCAGTT----GTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAG
s HiC_scaffold_1 108531394 474 - 233722169 TCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATAAGTCGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAG

a score=14026
s chr3            98526479 438 + 160039680 TTTTCATTTTCTAGCCTGCTCCACATTATCCT-AGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTCAGTACTGCCACCTTGGCCTTTGTCTGCCTCTCTGTGG-ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGAT-GGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGTGGAGA--GGAGGGCTTTCTATAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGCAGTTGTAGAGAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCA
s HiC_scaffold_1 108365765 444 - 233722169 TTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGA-GCAGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGAT-GTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=13504
s chr3            98538336 687 + 160039680 TTAAAGATTCCTTGATCCAACTTATTACTGA-GTTGGAGACATTTGTTCTATTTATTTCCTGGGGAATTGTGGTCAAAAGCTAGCTACTTTTGCTGTCTTTAATAAGCAAAACTCGAAGAAGATAATGAGCTTAAATGACTT---AGTTCTGAGGCAGGAGAAGGTGAGCACTTAATCCTTTAAGCCACATGGTCTCTTTTACAGTCTAGTAACTGTACATATATGTGATAAATGATtatctatctatctatctatctatccatcCCAATGCTCATAGACAATCTGAACTATGTTTCTGATGTTTGTGCACACTTTATTttttgttttttcaagccagggtttctgtgtgtagtcctggctgtcctggaactcactatgtatcccaggcttgcctctaactcagaaatatgcatgcctatgcctcccaaatgctgggattaaagcatgggccaccactgcccagctTGTGCACACTTTCCATTTTAGTGCTATTTTACATCTCTTTGTTAAAATAGTAAATAATTTGATGATCCCAAGAGTACCAGATTCTGTG--AGTGTGCTTGTTTATTTGAGTACTGCCCTGTTTTCA---TGTTTCA---------GGTTCCTTGAACAGAATTCTGGCATCCAGCAACCAATATGAGCTATTTGTCATTAAATCCCTACCAGTATTTTATCATATCATCCTTCTTTATT
s HiC_scaffold_1 108285392 502 - 233722169 TTAAGGATTTCTTCCTTCAAATCATTAATGGTGATAGCAGCAAGTATATTATTTGTTTCTTGGGGAATT-TGGCCAAGA-----------------CCTGTGCTAAGCAAAACCTAAAGCAGTTAA-AAGTTTGATTAAATCTTGAGTTCTGGGTTGGAAGGAGATAAACACTTAACCCCTTGAGCTGTATGGTCTCTTT-ACAGTCAAAAGACTGTGTATGTATGTGAAAAGGTACAAATTAAGGATTTGT------------------GTTCATAGACAATCTGAACTGTGTTTCTG--GTTTATGCACACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCACTGTAATG--ACTTTACATCTGTTTGTTAAAATACTGACTAATTTAATGCTCCTAAGAGAAACAGGTTTTGTGTGAGTGTGTTTATGTATATGAGAATTGCCTTGTTTTGGggttgttttatttaatattggTTCTTTGGACAGTATTCTGGTGTTCAGCAACAAATACGGAATGTTGGTCATTAAATCCGTATCAGTCTTTCAc--tgttatttttccttatt

a score=44597
s chr3            98552472 1317 + 160039680 CAGCAC-TGACTATGGACTTCACTGGATATAGAAAAGAAAGGTGGCCACTG-GAGTGACCAAACAC-ACACCTTTTCCACATTAAGCATTAAAAGATTTTATTGTTCTTTTCTTTGAGCTTCATAAAG--GTATGGGAATTTTCTCAGACACGAAAT----------GCGTTGGCACATGGAAAGGAG--ATGAGGAAGCCCTGATGAAATTCTAACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCTATCCTTGGGTCACAGCAGCTGAGGCACATCTTGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTTCTAAGTCCCTTTCTGGAGGACCTAATAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACC
s HiC_scaffold_1 108401778 1203 - 233722169 CAGCACATGACTACA------AttggaaagggaaaggaaaggtgaAAAATGTGAGTTAACAAAAATTATACGGGTTCCAGGTTAGGCAATCAAAG-TTTTATTCCACTTTTCCTTGTGCCTTGTTAAGCATTGTAAGgtttttcacagaaaagaaacagtatgTTTAGTAATGGGAAATGAAAAATAGGCATTTTGTAGCCTT-ATGAAG---------ACAATAAGTT------------------GCCA-------TGGTGTCACAG--------------------------------------TCAGGCTGTAGGAT-----CTGCGCTTGTGCCTTTGACAAGTTTTGGAGG----AATCCAGGTTGAAGAAG----CAGATAAAAGCATCAGGGGT--------------------------------------CACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTCCC

a score=39150
s chr3            98552494 1282 + 160039680 TGGATATAGAAAAGAAAGGTGGCCACTGGAGTGACCAAACACACACCTTTTCCACATTAAGCATTAAAAGATTTTATTGTTCTTTTCTTTGAGCTTCATAAAGGTATGGGAATTTT-CTCAGACACGAAATGCGTTGGCACATGGAAAGGAGATGAGGAAGCCCTGATGAAA--TTCTAACCTACAAGAGGTTCCAGGCAACTCACTATCAGCCACCTATCCTTGGGTCACAGCAGCTGAGGCA---CATCTTGTGCATTGCTGGACAAGTGCTTAGAGCTGAAGGGTTGCAACTGGGCCAGTGACTTGCAAGGCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGTTAAGAGTTGGATTGTTT--CTAAGTCCCTTTCT----------GGAGGAC-----CTAATAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGC--GGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACT-GAGCTGCTGTAG--ATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAA
s HiC_scaffold_1 108297966 1243 - 233722169 tggaaatggaaggaaaatgt----ATATTATTAACAAAACTCATACTTTCTTTATATTAGTCCT--Aaagcatttattgtttttcc---taAGCTTTATGCAAA-ATGAgagtttttcaaagaaaagaaacaatttaaca-aTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCAC-TATAAGAGGCCATAAATAATTCA-----AACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCTTGTTT-TTCCTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTGGCC--------------ACTGCTTGAAAAGCAG---TGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCC--TCTGAGTCCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGA---TTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=45209
s chr3            98552801 1044 + 160039680 GCTTCTGGTGACCCAAAGACAAGTTGGACAGAGTGTAAAATGGAATTGT--------------TAAGAGTTGGA-TTGTTTCTAAGTCCCTTTCTG--------------GAGGACCTAA--------------TAACACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACCGTGGCAATGGGGTCAGACTGGTCTCCATCCCAAATT-----CCGTGAAATGGCCAATAGAG
s HiC_scaffold_1 108528337 1076 - 233722169 GCATCTTGTGGCC----------TTAGGAAGATGGTAAGTTGCGATTGTGTCAGAGGAGCCTGTAGGACTTGGGCTTGTTCCTTTGTCACTTTCTGAACAAAGACATATGGAGGAAGTAAATTAAACTTCCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTCCC----CCAT-GGATAAGAATCATGTTCATATCCAGTTCCTCCCCATGAGGTGATTAATACAG

a score=37802
s chr3            98552895 861 + 160039680 CACCCAGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTTAGACCATGTGCTTTCATGAT-GCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCA
s HiC_scaffold_1 108360957 859 - 233722169 CACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=43075
s chr3            98552900 889 + 160039680 AGGGCCATGTCCTCTCCCTCTTCATATCACTGTGACTTTTTGTTTCCAATCTCCCTGTGCTGCATCACTAGTGTTCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCCTTCTTGTAGGAGAAGGTGAATACACTATTTAGCACTGTGATCAAGAGGCGGTTAAATGGTGGTCTATAGTTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGGAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGACTCCAGCTGGTATCAAGGCGGAGGCCCCACTCCTTGCTCAGGGTGCATTTTAAGTCATCATAGCTTTGGTGAGGGGTGTCATCTGTAATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTAGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGAGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGTTAG-ACCATGTGCTTTCATGATGCTCCTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACGTTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCACAATCATTGCTAAGAAATAAGCCAAAGGTCACC
s HiC_scaffold_1 108440445 892 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCC

a score=14242
s chr3            98556793 945 + 160039680 GTGTCTGGTCCATAGACGCAGTGG-GTTGATGGACATCAAGTATTTGGAGATGGAGTCA-ATTCACTTTGGTGTGGAGAGGC----AGGAGAACTTTCCTGGCAGTTGGGGTGTCATGGGTGTGGCTTTATAATCTTTCAGTGATACTGACTACACCTGG-----TGTCA---CTCTTTATCTCTCTG--TCTGGTTTCTTTTTCTAAACCCTGAGGACAATAGTCCTGAGTTCTG-CAACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAGCACAGCAGGTATTCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCCACCTGTTCCAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAGGAGGC--CTTTCTACAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGTGTTTGTA---GGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAA--------AAAGAGAGTTACGGGAAGCTCCT-AAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTA-AAGAGGGAGAATAGGATTT
s HiC_scaffold_1 108301487 843 - 233722169 GCACCTGGTCCAGGGGAAGAGTTACATGGGTGAATAACAAAAGTGAAGAGTTGAAATCAGATAGATCTTGGAATGGAGGAGCTGTAGGCAGAGCTTTCTTGGTCTTTGAA-TCACACAGGTGTGAATTTACATTCTGGTCATCTTAGTGACTACAGCGGGGGCTTTGGcaagtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAATGG-----AGCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGG----TCAAAGCCCAACATCAGTTCCATGGTGgggc-ttctctttccctc---------------------------tccatcTGTT----------------GTGTT-----------GTCTTCCTTTGCAAC-------TGGCTTTCA---------------------------GGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGT------------------GTGTCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgttt-------------cagttttctgagaaagG------ATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGG-ACAGTTACATACAAGATGAAAAATCAGACTT

a score=10956
s chr3            98556806 679 + 160039680 AGACGCAGTGGGTTGATGGACATCAAGTATTTGGAGATGGAGTC-AATTCACTTTGGTGTGGAGAGGC----AGGAGAACTTTCCTGGCAGTTGGGGTGTCATGGGTGTGGCTTTATAATCTTTCAGTGATACTGACTACACCTGG------TGTCACTCTTTATCTCTCTGTC-----TGGTTTCTTTTTCTAAACCCTGAGGACAATAGTCCTGAGTTCTG-CAACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAGCACAGCAGGTATTCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCC-ACCTGTTCCAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374146 586 - 233722169 AGGTACAGTGTG--GATGGATATCAGAAGTGCAGGATTGGAGTCTCGTCTACCTCAGAATGCAGGAGTTGTTAGAAGATCTGGCTTGGGAGTTAA------ATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGAC----CAGAACCCAGAAG------CAGTGGAGCTTCTCCTCTTTTTGCTAC-------TTCACCTACCATCATTTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTG----------------------------------------------------------------------------CCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTTGGTG--------GGAACTTT-----TTAAAGTGATGGTTATCTTTGACTTCAAGGATA

a score=18902
s chr3            98557139  959 + 160039680 CTCCAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTG---TCTATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGGACAGAAA--GCAGGGTCTTTGGAAGCTTTGTGCATGGG-ATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACT-GGAGAGGAGGCCTTTCTACAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGTGTTTGTAGG---GAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAA-------AGAGAGTTACGGGAAGCTCC--TAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA-TAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGG--------TGTGAAGACATAAGAGAAATATGGATAAGCAACAGGTTAACCAGATTATGTTATCTGGAGTTCCAGTGAGG-------AGGATCCAGAAG-ATGGACACAAAAATGGACA----------------TTTTAGCTTTGCCCTGACAGGTCT-----TGAAACTTTCTGAGTCTAGGCTGTTTATAA-----ATGAAGTGTTAGCCCTA-------TTACA-----------GAGAAGCAATAGGAGTCTCTGTGAGAGAACCCAGAATAGACTCAAATGA-GGGTTTAGGTGAGCATTTCTTAT
s HiC_scaffold_1 108444643 1013 - 233722169 CTGCAGGTGTTCCACA-GGGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGT----------TGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGAT--AAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGTTGTGTTTG----ATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGGCTGTGAAAAGGGTACTCACA---------------TTGGTACCACAATGTCCAGTGACCTTTTGTGaggatacaaaagaaaacaagac-tgcAGTGCACTAATCAGAATGTCTCTGCCAGAATTCATAAGAGggcaaaccaggtcccagcagtaggaagagaagaagggagaacCACAAGCCATCAGTTTCAGGCTTTCCCATAACAGGTCTGGGTATGTAACTTT----GTCTTGGATGTGCAGAAAACTGATTAAGC-TCATCCCTAGTGTTTCCTACATGTGTAACTAGGAGGAGGTAAGTGAG-CCATGCCAGAGAATTCAGGATTGGCTCTTCTGATGGGCtttattgaaaatgttttat

a score=17238
s chr3            98557142 725 + 160039680 CAGGTGTTCCAAACTAGGTGCTCCCCTCCCCAACCTGTC--TATGGTTTTCATTTTCCAACCTGCTCCATATCTTCCCTGGG-TACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAG-GAGGCCTTTCTACAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGTGTTTGTAGGGAATGAGGAAGCATTTATATCTGCACC--ATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAA----AAGAGAGTTACGGGAAGCTC--CTAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA-TAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA-----AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGGTGTGAAGACATAAGAGAAA
s HiC_scaffold_1 108405600 743 - 233722169 CAGGTGCTCTACAGGGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT---TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAATCTCTGATGAGTATCATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgaggcagtgtTGTGAATAGGACACTCACCTTGGCACC---AGGATGTCCATTATACTAT----TGCAAAGATATAGTAGAAA

a score=15980
s chr3            98557162 843 + 160039680 CTCCCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATC-TTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACA-CTGGAGAGGAGGCCTTTCTACAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGTGTTTGTAGGGAATGAGGAAGCA---TTTATATCTGCACCATCCCT------TTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAAAG---------AGAGTTACGGGAAGCTCC--TAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGAA--TAGGATTTAATT--GATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGGTGTGAAGACATAAGAGAAATATGGATAAGCAACAGGTTAACCAGATTATGTTATCTGGA---------------------GTTCCAGTGAGGAGGATC--CAGAAGATGGACACAAAAATGGACATTTT--AGCTTTGCCCTGACAGGTCTTGAAACTT-TCTGAGTCTAGGCTGTTTATAAA
s HiC_scaffold_1 108389252 889 - 233722169 CTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATC----CCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCTCTGATGAGTATCATGAA---AAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG---ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggaggaagagaggcagggCTGTGAATAGGATACTCACATTGTTATCATGATGTT--------CAATGTCCTTTGTGaggacataaaagaaaacaagac-tgcaattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagc-agtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAA

a score=22033
s chr3            98557165 1292 + 160039680 CCCTCCCCAACCTGTCTATGGTTTTCATTTTCCAACCTGCTCCATATC-TTCCCTGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGT-CTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGATGGAAGTTTC-CTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACA-CTGGAGAGGAGGCCTTTCTACAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGTGTTT----GTAGGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCAGTAAGATGCCATTTGTGTCTTGCACATAAAAA--GAGAGT-TACGGGAAGCTCC--TAAATGCATTAAAGCAACTGGGGAAGTGATGGCACAAAAATGTAAAGAGGGAGA-ATAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCTAGAGTCCTGCCTTGGGAATCTGTAACAGCAGCTAGGGGGTGGGTAATAAACTGCCGGGTGTGAAGACATAAGAG-AAATATGGATAAGCAACAGGTTAACCAGATTATGTTATCTGGAGTTCCAGTGAGG-------AGGATCC---------------AGAAGATGGACACAAAAATGGACATTTT--AGCTTTGCCCTGACAGGTCTTGAAACTTTCTGAGTCTAGGCTGTTTATAAA------TGAAGTGTTAGCCCT-------------------ATTACAGAGAAGCAATAGGAGTCTCTGTGAGAGAACCCAGAATAGACTCAAATGA-GGGTTTAGGTGAGC--ATTTCTTATCAGATAGATTC-----------------TTGTAAATGAGGCAACCTCAAGTGGAC------CACACTGTGGGCTTGAAGTCAGTGGCAGTGTTTTCAGGTTCCTT----------TGAAATTTACTG---------AATGATACTGGCAATCACAATATCATACAAATAAGCTC---ACAAAATTAACATGTGCC-CTTGCAGCCTTTACAAATACTCCACCCTGGCTTTAGGTTCACATTTT----GCACATGATTTTTTTGGTTTGCTC-TTTCCTTTCCCAACCATGTCATCATATCAGGCATTCTGA--------TATCCCAGGAATAGGTTGGG-----GAATCACAGAAGGCTCCAGGAACATGCCTCAGGACACACATCTCCCTAGTGAAGGCTCTAATGTTCCTCTGCCTCCTTC
s HiC_scaffold_1 108531395 1409 - 233722169 CCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCA-CACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA-AGTCGACA-GtacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATGAACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAG-ATAGTTTGATACAGAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAGGCAGGCCTGTGAATAGGACACTTACCTTGGCGCC---AGGATGTCCAATATACTGT----TGTGAGGATATAAGAGAAAACAGGGCTA--CAATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGAGCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCAGAAAAATCAGTTAAGC-TCATCCCTAGTGTTTCCCACTTGTGTGACTAGGAGGAGGTGAGTGGAGTCCTACCAAGAGAATTCCAGTTGAGCTCTTTTGATGGACTTAATTAATCTTATTGTGTGTCAAATAATATCAATATCCAGCATGCATGATACAAATGAGTCATCTACAAGTGATTTCCATACAAGCTGTCTAGTCCAGGACAGTGGCTGCAACATGAAGGTGTCCATATGACAAGTGAGACTCACCTGTGTGATGCAATGATACTGACAGTGACAAGACCATCCTAATTTAATCCAGAAAAACCCATCCTGTGCCACACATAGTATCCATCAACACTCGACATTTGTTTGTGCTGCACAGTTTACAAGCAAATGA-----ACAGttgactcattttttttcctaaagaccTTGTTGGAG-AGGAATTCTGATTCTGCTTTCTCACCTGCTTagctgaggaaactgaagctcagcaGGCTCTAGGGACCCAACTGAGTACAAA----GTGGCAGTGAGGTCTCAActcctctcctgcctccttc

a score=13989
s chr3            98557186 438 + 160039680 TTTTCATTTTCCAACCTGCTCCATATCTTCCCT---GGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCACTGGGCATCCAGAATGTCTCCCTTCAGTACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG-ACAGAAAGCAGGGTCTTTGGAAGCTTTGTGCATGGGAT-GGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGAGAG----GAGGCCTTTCTACAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGTGTTTGTAGGGAATGAGGAAGCATTTATATCTGCACCATCCCTTTGTAGAACATGCACCTGAGCA
s HiC_scaffold_1 108365765 444 - 233722169 TTGTCCTATTCCTGCCTGCT--GTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGCAG-GCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGA---TGTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=9459
s chr3            98563268 211 + 160039680 GTCCCCCAGCTCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAG-ATAGTTGAGGGTGCAGATGTGAT
s HiC_scaffold_1 108534964 205 - 233722169 GTCCCACAGCTC-------ACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGT

a score=9520
s chr3            98563275 283 + 160039680 AGCTCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGTTGAGGGT-GCAGATGTGATATAAGGTACTCCTGTGGAT----------------TGATTCAATGTGTGCAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAAAAAAAAAT
s HiC_scaffold_1 108393329 293 - 233722169 AGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAGGACACACAAACTTCTTCTA-------ATGTCAGAGAGAGGAAT

a score=9920
s chr3            98563275 226 + 160039680 AGCTCCTATATCACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGTTGAGGGT-GCAGATGTGATATAAGGTACTCCT---GTGGATTGA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTAA

a score=8859
s chr3            98563285 535 + 160039680 TCACTTACTGGACAATT----CCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTC-TGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTC-AACACAGGAATCAGATAGTTGAGGGTGCAGATGTGAT-ATAAGGTACTCCTGT------------GGATTGATTCAATGTGTGCAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAAAAAAAAATGTCCTGAAGCTAACTTCACCCATTCCTCTCATAAGAC--ATCACGTCTCTGATCCCAAATCTTGTGGGATGTT----CTATAAGAAGCAAGGAAAAACAGAAAATCAAAACCAGAGTACACATATGCACTGGACACCAGATATGCAATCTCTAGCTTAGGTTATCTTTTACCCTGAGGCACT------------GCATTAGTCTGTGcccaaaggttgtctctctcaccttagatgctaattacaaactctggattgtcttacctgtgcttatgagaaac
s HiC_scaffold_1 108302927 524 - 233722169 TCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAA---GTGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAA--GGCACAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGTG-------ATGACACAGAGAAAAAACTACTCAAACTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGC-AGATATTTTCCCCACCAGATGTGA----------AAAATCATTGCTACAGTA-------------AGCAGCAGTTCTA-----TCTGACCCCGATTATCT-------GGAGAGACTCAGATCATATAGGGAAAAGCCTTTGTTCACCTTTGTTCTGGCACAGTTCAGATGCCAGTTACAACCTCCAGGTTATTTTATCTGTGCTTCTGAGCAAC

a score=10459
s chr3            98563286 264 + 160039680 CACTTACTGGACAATTCCTCTTCCTGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAGCTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAATCAGATAGT--TGAGGGTGCAGATGTGATATAAGGTACTCCTGT---GGATTGA------------TTCAATGTGTGCAGGGTCAAGGAATTGCTACTACACTTACATAGTAGAA
s HiC_scaffold_1 108410535 280 - 233722169 CACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGAT-CAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAGGGCACATAAAGTGCTTATAATATCAGACAGGGGAA

a score=42511
s chr3            98579247 1255 + 160039680 TTCttttttt--tttttttttaataaaaaaattGTATTTACTTAGAAGCATTCAGAATGTCAACAAAACAGCCACTTTTTTTTTTTTTTTTTGCAATTACAGAGTGGTATTCAGTTAACAGAACAACAATTATCTTCGTATAAGCTGTATCAGAGACAACTGAAGATGAAaaaaataaaaccaaaagaaaaaaaaaaaccaaaaaccaaaCTGCTG--TCCCCATATATAACTAATTTGTGCTGTGCACCAACAAGAACCTGCTTTAAATTTCCATGCCAATTTACAA-TCCCAGACTGTACCAGGCAAGGTTAGTGGCTATTGAAAATACCACCAGGACAAGGCTATCTAAAGACACGTTCAGTAGTGTGTTAACTATACAAAAAAAGA-CACTGTACAGTTTAAAAACAAATCTTACACAGTCTTACATTTCAATTTTTTTTCTTTAAAAGGAGTGAGTTATGTACAGGGGG--GGTTAAACGCTTTATAGATAAGAAAAAAAAAACTGCGCTAGAACCAACTTAttcatcatcttcttcatc-----------------------------------------------------ttcttcttactcctcttcctc-----------------------atcctcttcctcctcctcctcatcttcctcttccttctttttcttGCTCTTTTCAGCCTTGACCACCCCCTTTTTCGCTGCAACAGGTTTTCCTTTAGCTCTGTAGGCAGCAATATCCTTCTCATACTTCTCCTTCAGCTTGGCAGCTTTCTTCTCATAGGGCTGCTTGTCATCTGCTGCAGTGTTGTTCCACATC--TCTCCTAGTTTCTTTGC---AACATCACCAATGGATAAGCCAGGATGCTCGCCTTTGATTTTGGGGCGGTACTCAGAGCAGAACAAGAAGAAGGCCGAAGGAGGCCTCTTGGGTGCATTGGGGTCCTTGAACATCTTTTTGGTCTCCCCTTTGGGGGGGGGGGAGATGTAGGTTTTCATTTCTCTTTCATAACGAGCCTTGCCAGCCTTTGCCATATCTTCAATTTTTCCCCTTTTCTTTAGCAGACATGGTCTTCCACCTCTCTGAGCACTTCTTGGAGAA---TGAGAAGTTGACAGAAGCATCCGGGTGCTGCTTCTTGTGCTCCTCCCGGCAAGTTTGCACAAAGAATGCATATGAGGACATTTTTGCCTCTCGGCTTCTTAGGATCTCCTTTGCCCATGTTTAGTTGATTTTCCTCCGCGAGGCACAGAGTCGCCCAGTGCCCGTCCGGCTTGCGCTTGCCCCGGCGCTGTCTCTATGGAGCTCAATGTACTGCAATGGCTG
s HiC_scaffold_1 118338204 1243 - 233722169 ttctttctttcgtttttgttaaattaaaaaatt-----tacttaaaagcATTCAGAACATCAATAAAA-agcttcagtattttttt-------caattatagaGTAATTTTCTGTTAACAGA-------TTTATTTTGTATAAGCCACATCAGAGccaaattaa------------------aagggaaaaataaaaacc----------ctgCCAATCCCCAATATACAATTAATTTGTACTGTGTATCAACCC-AACCTACTTTAAATGTCTATACCAACTTATGACTCTCATCCTGTAACAACCAGTGT-AGAGGCCACTGAAAATACAGAGAAGATGGGGCTTTCTAAAGACTCATTTGGTAGTGTGCTA--TACACAAAAAGagaacactctaccactgagaaaCAAATCTTACACAGCCttacatttaatctttttttctttaaaaagagaaacttgAGTGTGGGGAATAGTTTACAtgctttatagatgagaaaaaa----tTGTGCTAGAACCcacttaaatattatattttttcttgagacagggtcctgctatgttgTCCAGGGGCCTTGAATTCTTGGGCTAAAGTGTTCCTTCTACTTTAGTCTCCCCAGTGGCCAGTGTGACCAGTGGAATcatcttctttcttgtctttttcttcctccgTCTCCTctt-cttgctttttgcagctCT---CTTCCTTTGTTTGCCTGTATCAGGCTTTCCATTAGCTCAGCATACGGCAAtatcttttctgcatttttccaTCAGCTGAGCAGCCTTCTG-----AAGGCAGCCTGTCACCTGCAGCAGTATTATTCCACCACGTTTTACAATTTTGTTTGTGAGAACACCACCAACGGATAGGCAGGAATGCTCTCCTTTGATT--AGGGGTGAACTGAGGACAGGACAAGAAG---GGTGACAGAGGCCTCTTGCATACCTTAAGTTCCTTGaacttctttttgctttctct----------gaGGGAGtttaagcttttgtttttctttcctcatgggcctt---------tgctatgtcttcaggttttctt-ttctcttttgcagtcCTGGCATGACACCTTACTGAGAACTTCTTAGAAAACTTTGGAAAGTTGAT----GCATT-GACTCTTTCTTCTTGTGCTCCTCATGGCAAGTTTGTAGAAAGAATATACACAATGACACTTT--CTCCTCAGCTTTGTAGGCTGTCCTCTGCCCATGTTTCgttgtttttcctttgtgagGCACAGAGC-------TGCCCATTCAGCCCTTGCTTGCCCTGGAACTGTCCCTACAGAACTCGAGGTGTTGCAAGGGCTG

a score=38179
s chr3            98580606 1393 + 160039680 ATAGTATTC---CAGTCATTAGGTACACACTCAAAAGACAATGGGTTGAAGTTAGTCTTGCATCTGCATCTGTTCCTGACTTTTTC----CTCAGTTCACCTCAGATCCATGATCTCTTTCTGATCCCAGAATGACCATGTGTAGACACAGAAGGGACATAGAATTAT-TTATTTACAGAAAACCACAATCCATCGATGAGGTATTGAC----AAATATTTATTGTTCTTTCCATTGTGCTTTATAAAGAAAGCAGAATTTTCTGAAGGGTAGACATGCTTTGA--------ATGGGGAATTGGAATCATGGCGAGAGCTCTGAGGTACAAGAGGTGCTTAGGAGGTTCGACCGT----------------GGAACTGGGGCACAGCTGCTGTGAATTTCTGGGTAGGGTCTTCAAGG-AGAAGGCTTGTGGCTGGGTCAGTGACTGACAAGGCTTTCAGTGACT--TGATTAAGACTCTAAGATCCTCCGTATCAAAGAGAAGCAGCAGG---ACCCAGGTTGTGTGCCTGTCCCTGCTAGAGGA---------CCTGATAACACCTAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTCTGCTTGGCTTCCTGCCAGCTGACAAGTGGCTCATAGCCCAGATCTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTGATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACTTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGTTATCAAGGC--GGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCATCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCTCCTTGGATGCTTGGGGACTTTTTGGGGTCCTGTAGGCCCCTGGCAGTCAGAATGTGAGCCCAGGCTGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGCCAGGCCATGTACTTTCATGATGCTCTTCCTCATGGCCATT-TGGACAATTTCCTTGTATGAATTTAGTCCAGCCACAAGTATT-CAGCTACTGTAGATGAAGGCTGGTACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAA
s HiC_scaffold_1 108297832 1377 - 233722169 ATAGTATGTGGACAGTCATCTAGTACATGTCTAAAACCTAGCAGGTCTTAGTCATTCTTAGATCC-CATC-----CTGACTTTACCACCACTCTGCCCATCCCAGTTACATGATCC--TTCTGAACTACAGAAGGCCATGTTtggaaatggaaggaaaatg----tATATTATTAACA-AAACTCATACTTTCTTTAT-----ATTAGTCCTAaagcatttattgtttttcctaA---GCTTTATGCAAAATG-AgagtttttcaaagaaaagaaacaatttaacaaTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAAACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCT-TGTTTTTCCTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTGGCCACTGCTTGAAA----------------AGCAGTGAGCAG-AGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTG--AGTCTCTCCTCTGAGTCCCCTTGTGCTGATCCACT--------------CTTTAA---TATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAG-TTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=36108
s chr3            98581019 960 + 160039680 AGGCTTTCAGTGACTTGATTAAGACTCTAAGAT-CCTCCGTATCAAAGAGAAGCAGCAGGACCCAGGTTGTGTGCCTGTCCCTGCTA---------------------GAGGA---------------CCTGATAACACCTAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACT-TTGAGTTTTTTCTGCTTGGCTTCCTGCCAGCTGACAAGTGGCTCATAGCCCAGATCTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTGATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACTTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGTTATCAAGGCGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCATCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCTCCTTGGATGCTTGGGGACTTTTTGGGGTCCTGTAGGCCCCTGGCAGTCAGAATGTGAGCCCAGGCTGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGCCAGGCCATGTACTTTCATGAT-GCTCTTCCTCATG-GCCATTTGGACAATTTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCA
s HiC_scaffold_1 108360826 990 - 233722169 AGGCATCTGGTGGCCTTTGAAAGACAGTAAGTTGCCATTGTGTCAGAGGGAGAGTGTATGAC-----TTGTACTCCTGCCTTTGTCAAGTTCtgcaggaagtcagaaggaggaaGTAGGTAAATAGCTCCAGGCATCACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTT--CTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=42620
s chr3            98581019  988 + 160039680 AGGCTTTCAGTGACTTGATTAAGACTCTAAGAT-CCTCCGTATCAAAGAGAAGCAGCAGGACCCAGGTTGTGTGCCT------------------GTCCCTGCTAGAGGACCTGATAA-------------CACCTAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTCTGCTTGGCTTCCTGCCAGCTGACAAGTGGCTCATAGCCCAGATCTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTGATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACTTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGTTATCAAGGCGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCATCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCTCCTTGGATGCTTGGGGACTTTTTGGGGTCCTGTAGGCCCCTGGCAGTCAGAATGTGAGCCCAGGCTGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGCCAGGCCATGTACTTTCATGATGCTCTTCCTCA-TGGCCATTTGGACAATTTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAAGCCAAAGG
s HiC_scaffold_1 108401957 1019 - 233722169 AGGCATTTTGTAGCCTTATGAAGACAATAAGTTGCCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCT-TGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCC-TGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGG

a score=42781
s chr3            98581110 897 + 160039680 CCTGATAACACCTAGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTCTGCTTGGCTTCCTGCCAGCTGACAAGTGGCTCATAGCCCAGATCTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTGATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACTTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGTTATCAAGGCGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCATCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCTCCTTGGATGCTTGGGGACTTTTTGGGGTCCTGTAGGCCCCTGGCAGTCAGAATGTGAGCCCAGGCTGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGCCAGGCCATGTACTTTCATGATGCTCTTCCTCA-TGGCCATTTGGACAATTTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAAGCCAAAGG
s HiC_scaffold_1 108528456 896 - 233722169 CCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCC-TGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGG

a score=40747
s chr3            98581123 894 + 160039680 AGGGCCATGTCTTCACCATTCTCATCTCACTGCTACTTTTTGTTTAGCATCTCCCTGTGCTGCTTCACTAGTGTTCCAATACACTTTGAGTTTTTTCTGCTTGGCTTCCTGCCAGCTGACAAGTGGCTCATAGCCCAGATCTTGCTGAGCTTTCTTGTAGGAGATGGTGAACACACTATTTAGCACTGTGATCAAGATGTGATTAAAGGGTGGCCTATAGTTGTAGACTGGACTTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAACCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGTTATCAAGGCGGAGGTCCCACTCCTTGCTCAGGGTGCAATTTAAATCATCATAACTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTCTCCTTGGATGCTTGGGGACTTTTTGGGGTCCTGTAGGCCCCTGGCAGTCAGAATGTGAGCCCAGGCTGCATTGCCCACATACATTGGGTTGTCTATGGAGAATGTGGTATTTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTATATTCAGAGTGGTTGAAGGGATTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGCCAG-GCCATGTACTTTCATGATGCTCTTCCTCAT-GGCCATTTGGACAATTTCCTTGTATGAATTTAGTCCAGCCACAAGTATTCAGCTACTGTAGATGAAGGCTGGTACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAAGCCAAAGGGCCACTGTGG
s HiC_scaffold_1 108440445 897 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCC-TGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCCCATGG

a score=11169
s chr3            98583835 586 + 160039680 GTGGATGGAAATCAAGTATGTGGAGATGGAGTCCAGTCACATAGTTGAGAAGG--------GTCAGGAGAATGTTCCAGGCATTGAGAATACACTGGATGTGACTTTATAAATATTTTCTCCTACTGT---------------------TCATTCCTCTCTATAT--------ATTTTTCCCTTTAAACAGCAAGGTCAAGGGTCCTGATTTCTGCCCCC------TGGTCAGCAAGGACATACATCTGGCCTAGGCAGAATACAGCAAGTATCCCACTATTCCTCCAGTTGTTCCAAAGTAGGAGCTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAG-TACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374155 577 - 233722169 GTGGATGGATATCAGAAGTGCAGGATTGGAGTCTCGTC---TACCTCAGAATGCAGGAGTTGTTAGAAGA-----TCTGGC-TTGGGAGTTAAATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAA----ATGCACTTGGAC----CAGAACCCAGAAGCAGTGGAGCTTCTCCTCTTTTTGCT-----------ACTTCACCTACCATCAT--------------TTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT---------GGTGGGAACTTTTTA----AAGTGATGGTTATCTTTGACTTCAAGGATA

a score=13665
s chr3            98584075 574 + 160039680 CTCCAGTTGTTCCAAAGTAGGAGCTTCCCTCACCAACCTG---TCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGG-ATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGT-GGAGAGGAGGGCTTTCTACAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGCAGTTGTAGAGAAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCACT-GTGCCTTACACAATACG-------ATGGAATTATGGGAAA--TCCCTACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATC
s HiC_scaffold_1 108444643 583 - 233722169 CTGCAGGTGTTCCACAG-GGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGTTGCTCTA----------CCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGA--TAAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTA-ATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAGATAGTC

a score=14211
s chr3            98584078 487 + 160039680 CAGTTGTTCCAAAGTAGGAGCTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGC---TCCACATTA-TCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGGACACAAA--GCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGTGGAGAGG--AGGGCTTTCTACAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGCAGTTGTAGAGAAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAA
s HiC_scaffold_1 108405600 501 - 233722169 CAGGTGCTCTACAGGGggacttctctttcccttctcatcCCTC-TTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATA-TGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTG-GTAACAATCAAACAACTGT-TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAA

a score=10708
s chr3            98584083 567 + 160039680 GTTCCAAAGTAGGAGCT-----TCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGT--GGAGAGGAGGGCTTTCTACAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGCAGTTGTA--GAGAAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCAC-TGTGCCTTACACAATACGATGG--------AATTATGGGAAATCCCT-ACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATCA
s HiC_scaffold_1 108301765 541 - 233722169 GTTCCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTCCTTTGC-AACTGGCTTT---------CAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttc-------------agttttctgagaaag------GATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTA

a score=13518
s chr3            98584098 554 + 160039680 CTTCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTATCC-TAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAG-TGGAGAGGAGGGCTTTCTACAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGCAGTTGTAG--AGAAATGAGGAAGCATCTATATCTGCCCCA--TCCCTTTGTAGAAAATGCATCTGAGCAGGAAGATGCCACTGTGCCTTACACAATACGATG--------GAATTATGGGAAATCCC--TACATTCATTAAAGTAACTGGAGATTTGGTGGTTAATCAGA
s HiC_scaffold_1 108389252 578 - 233722169 CTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCT-CTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAGATAGTTGGA

a score=14672
s chr3            98584100 466 + 160039680 TCCCTCACCAACCTGTCTATGGTTTTCATTTTCTAGCCTGCTCCACATTA-TCCTAGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGG--ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGATGGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAG-TGGAGAGGAGGGCTTTCTACAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGCAGTTGTAG---AGAAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCAGGAAG
s HiC_scaffold_1 108531394 474 - 233722169 TCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATAAGTCGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAG

a score=13801
s chr3            98584122 439 + 160039680 TTTTCATTTTCTAGCCTGCTCCACATTATCCT-AGAGTACTGTGCCTTTCAGATCAATGTCTAGGATGGTCTATCTGGGAAGGACACCTGCGATATCAATGATGGTAGAAGTGTGGATGACAACAGAGATGCCCTGGCCTGCTCTAATCAGACACTGGGCATCCAGAATGTTTCCCTTTAGTACTGCCACCTTGGCCTTTGTCTGCCACTCTGTGG-ACACAAAGCAGGTCCTTGGGAAGCTTTCTGCATGGGAT-GGAAGTTTCCTGACCCAGGTGTCAGTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACAGTGGAGA--GGAGGGCTTTCTACAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGCAGTTGTAGAGAAATGAGGAAGCATCTATATCTGCCCCATCCCTTTGTAGAAAATGCATCTGAGCA
s HiC_scaffold_1 108365765 444 - 233722169 TTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGA-GCAGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGAT-GTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTAT-GTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=9350
s chr3            98587793 538 + 160039680 AGGCTAAGACCCACTGCTAAGGTCTCTAGTTCAATAATCTTTTGTTAGTATTACCAAGTTTGCAAAATAGTGTAAATATTGACAAGTCCATTCCATTTAGGACATAAAAGAGCTTCCAGCAAAGGTGAAAATTGATCTGTAGTGTTTA----AATAGGAGAGAGACCAATAGGCCCACGGCCTGCCCATGACCAGTTGTGAGTGAGGACTGAATTCA--CTTTATCCAACTATACAGTGACTTTTGTGCTGTTCCAATTGTGAATATTGTT------TATAGATCCACCTAATTTTTATGCTGTAGAT-------------AAGAA-AGCCCTCATTACACCCC------------------GTCCATATCCCCTAGCCCCTAGATCACTTACTGGACAATTCCTCTTCGTGTTTTCAACTGAAGGTCCTGAACAGGGCTCTGATCTCCTGTAGCTCTTCCTTCTACACCACCAACATTTGGATAATCCTCTAGCCCAGAAACCCTCCTGTTTCTGTCACCAGGCAGCTCCTCCCATGCATGGTTAACACAGAAATCAG-ATAGTTGAGGGTGCAGATGTGAT
s HiC_scaffold_1 108534621 548 - 233722169 AGGCAAAGTTCCACTACTGCAACCTCCAGCTTAGTAGTACTTTGCCTGT---------TTTGCATAGTAAT-----------------CACTGAACTGAGCACATTAATTAGCTACAAG-AGAGGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGAGAAGTTTACCAGCCTGTGTCC--ACCTTGTCTAGTACTGAGC-AGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGATTACTCCTGGTGAGTGTGGACACACAGAGCCTTAGGGCTCcaagttctttttcatttcaggAGCATCCCTCTCTACTCACTCAGGCTTTCACAGTGGAGGCCCACA--CTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAG---TTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGT

a score=8418
s chr3            98588086 611 + 160039680 GATAAGAAAGCCCTCATTACACCCC-----------------GTCCATATCCCCTAGCCCCTAGATCACTTACTGGACAATT----CCTCTTCGTGTTTTCAACTGAAGGTCCTGAACAGGGCTC-TGATCTCCTGTAGCTCTTCCTTCTACACCACCAACATTTGGATAATCCTCTAGCCCAGAAACCCTCCTGTTTCTGTCACCAGGCAGCTCCTCCCATGCATGGTTAA---CACAGAAATCAGATAGTTGAGGGTGCAGATGTGATTAAAGA-TGGTGTTGT------------GGAATGGTTCAATTTGTACAGGGTCAAGGAATTCTTACTGTACTTACATAGTAGAAAAAAATGTCCTAATGCTAATTTCACCCATTTCTTTCATAAGAC--ATCACTTCTCTGATCCCAAATCTTGTGGGATGTTCTATAAGAAGCAAGGAAAAAATCAAAACCAGAGTACACATATCGACCGGACACCAGATATGCAATCTCTATCTTAGGTCCTCTTTGACACTGAGACACTACTTTAGACTGTTT---------CCTAAGCTTGTCTCT-------CTCACCTTAGATGCCAATTACAAACTCTGGATTGCCTTATCTGTGCTTATGAGAAACCTCTCACACATGTTGTTCTAAAAATTCTCACTG
s HiC_scaffold_1 108302862 622 - 233722169 GAAAAGAAACCCCACTCTACATCTACTTAGGCTTTATGATGGGTCCACTCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAA------GTGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCA-AGAAGTAAGGCA---CAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTA--GTGATGACACAG-AGAAAAAACTACTCAAA--CTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGC-AGATATTTTCCCCACCAGATGTGAAAAATCATTGCTACAGTAAGCA---------------------GCAGT-TCTATCT---GACCCCGATTATCTGGAGAGAC----TCAGATCATATAGGGAAAAGCCTTTGTTCACCTTTGTTCTGGCACAGTTCAGATGCCAGTTACAACCTCCAGGTTATTTTATCTGTGCTTCTGAGCAACGTGATATGCATTGGATTGTATCAATCCCTTCTG

a score=8777
s chr3            98588124 244 + 160039680 AGCCCCTAGATCACTTACTGGACAATTCCTCTTCGTGTTTTCAACTGAAGGTCCTGAACAGGGCTCTGATCTCCTGTAGCTCTTCCTTCTACACCACCAACATTTGGATAATCCTCTAGCCCAGAAACCCTCCTGTTTCTGTCACCAGGCAGCTCCTCCCATGCATGGTTAACACAGAAATCAGATAGTTGAGGGT-GCAGATGTGATTAAAGATGGTGTTGTGG----------------AATGGTTCAATTTGTACAGG
s HiC_scaffold_1 108393329 258 - 233722169 AGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAA---GTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAGG

a score=9034
s chr3            98588124 234 + 160039680 AGCCCCTAGATCACTTACTGGACAATTCCTCTTCGTGTTTTCAACTGAAGGTCCTGAACAGGGCTCTGATCTCCTGTAGCTCTTCCTTCTACACCACCAACATTTGGATAATCCTCTAGCCCAGAAACCCTCCTGTTTCTGTCACCAGGCAGCTCCTCCCATGCATGGTTAACACAGAAATCAGATAGTTGAGGGT-GCAGATGTGATTAAAGATGGTGTTGTGGAATGGTTCAA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAA---GTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATG--ACTCTGGAGTGGGTTAA

a score=9109
s chr3            98588129 240 + 160039680 CTAGATCACTTACTGGACAATTCCTCTTCGTGTTTTCAACTGAAGGTCCTGAACAGGGCTCTGATCTCCTGTAGCTCTTCCTTCTACACCACCAACATTTGGATAATCCTCTAGCCCAGAAACCCTCCTGTTTCTGTCACCAGGCAGCTCCTCCCATGCATGGTTAACACAGAAATCAGATAGT--TGAGGGTGCAGATGTGATTAAAGATGGTGTTGTGG---------------AATGGTTCAATTTGTACAGGG
s HiC_scaffold_1 108410529 253 - 233722169 CCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAA---GTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGAT-CAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAGGG

a score=16246
s chr3            98610171 817 + 160039680 GATGCCTGTATTACATGAAATTCCATGTGCCTAGGTGGTTATTTCTTGTCCTCCATTCTAGATGAATAGTGTTTCTTCAGGATACTCTTGTAACTTTGCTTCATGCTTGAAA----------TA--TTAAAGATTCCTTGATCCAACTTATTACTGA-GTTGGAGACATTTGTTCTATTTATTTCCTGGGGAATTGTGGCCAAAAGCTAGCTACTTTTGCTGTCTTTAATAAGCAAAACTCGAAGAAGATAATGAGCTTAAATGACTT---AGTTCTGAGGCAGGAGAAGGTGAGCACTTAATCCTTTAAGCCACATGGTCTCTTTTACAGTCTAGTAACTGTACATATATGTGATAAATGATtatctatctatctatctatctatctatctatctatctatccatcCCAATGCTCATAGACAATCTGAACTATGTTTCTGATGTTTGTGCACACTTTATTttttgttttttcaagccaggttttctgtgtgtagtcctggctgtcctggaactcactatgtatcccaggcttgcctctaactcagaaatatgcatgcctatgcctcccaaatgctgggattaaagcatgggccaccactgcccagctTGTGCACACTTTCCATTTTAGTGCAATTTTACATCTCTTTGTTAAAATAGTAAATAATTTGATGATCCCAAGAGTACCAGATTCTGTG--AGTGTGCTTGTTTATTTGAGTACTGCCCTGTTTTCA---TGTTTCA---------GGTTCCTTGAACAGAATTCTGGCATCCAGCAACCAATATGAGCTATTTGTCATTAAATCCCTACCAGTATTTTATCATATCATCCTTCTTTATT
s HiC_scaffold_1 108285266 628 - 233722169 GGTACCCTTATTAAGTGAGGTTAAATGCAGTCAGGAGGGTGTTTCTTGACTTTAATTTTAGAGTAATAATATTTCTTCAGCAAACCCTGTTAACTGTGGTTTACTTTTGGAAATCTAAGGATTAATTTAAGGATTTCTTCCTTCAAATCATTAATGGTGATAGCAGCAAGTATATTATTTGTTTCTTGGGGAATT-TGGCCAAGA-----------------CCTGTGCTAAGCAAAACCTAAAGCAGTTAA-AAGTTTGATTAAATCTTGAGTTCTGGGTTGGAAGGAGATAAACACTTAACCCCTTGAGCTGTATGGTCTCTTT-ACAGTCAAAAGACTGTGTATGTATGTGAAAAGGTACAAATTAAGGATTTGT----------------------------------GTTCATAGACAATCTGAACTGTGTTTCTG--GTTTATGCACACTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCACTGTAATG--ACTTTACATCTGTTTGTTAAAATACTGACTAATTTAATGCTCCTAAGAGAAACAGGTTTTGTGTGAGTGTGTTTATGTATATGAGAATTGCCTTGTTTTGGggttgttttatttaatattggTTCTTTGGACAGTATTCTGGTGTTCAGCAACAAATACGGAATGTTGGTCATTAAATCCGTATCAGTCTTTCAc--tgttatttttccttatt

a score=39453
s chr3            98618578 1278 + 160039680 TGGATATAGAAAAGAAAGGTGGCCACTGGAGTGACCAAACACACACTTT-TCCACATTAAGCATTAAAAGATTTTATTGTTCTT--TGAGCTTCATAAAGGTATCAAAATG-------TTCCAAGACAAGAAATGCTTTGGCACATGGAAGGGAGATGTGGAAGTCCTGAGGAAA--TTCTACCTACAAGAGGTTCCAGGCAATTCAGTACCAGCCACAGATTCTTGGGTCACAGCAGCTGAGTCACAACAGCCTGTGCATTACTGGGCAAGTGCTTAGGACTGATGGTGTGTGACTGGGCCAGTGACTTGCAAGGTTGCTAGTGACCCAAAGACAAGTTGGACAGTGCATAAAATGGAATTGATAAGAGTTGAGTTGTTT--CTAAGTCCCTCTCT----------GGAGGAC-----CTGATAACACCCAGGGCCATGTCCTCGCCCTCCACATATCACTGTGACTTTTTGTGTAGTGTCTCCCTGTGCTGCTTCACTAGTGTTCCAATCCACTCTGAGGTTTTTTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTGATAGCCTAGATCGCGCTGAGCTTTCTTATAGGAAATGGTAAACACGCTATTTAGCACTGTGATCAAGAGGCGGTTAAAGGGTGGCCTATAGTTGTAAACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAAAGCAGGGACAGAGGAAGGCTCCAGCCAGAATCAAGGCAGAG--GCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGAGTCTCCCATTTGTTGCCAGCACTGCCTTCTCAGCCATCCTTTTGCTGTATGGGTATGGGTTAGGCCATGTGCTTTCACGATGCTCTTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACT-GAGCTGCTGTAG--ATGAATGTTGGCACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAA
s HiC_scaffold_1 108297966 1243 - 233722169 tggaaatggaaggaaaatgt----ATATTATTAACAAAACTCATACTTTCTTTATATTAGTCCT--AaagcatttattgtttttcctaAGCTTTATG-------CAAAATGAgagtttttcaaagaaaagaaacaatttaaca-aTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAA-ACCAGCAAAGGGG----AGAAAGCAGAAACAGATACAAAGCAGCTTGTTT-TTCCTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCT----------------CATGGTGGCCACTGCTTGAAA-AGCAGTGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCCTCTGAGT--CCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGA---TTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAA

a score=45817
s chr3            98618922 942 + 160039680 GGAATTGATAAGAGTTGAG-TTGTTTCTAAGTCCCTCTCTG--------------GAGGA--------------CCTGATAACACCCAGGGCCATGTCCTCGCCCTCCACATATCACTGTGACTTTTTGTGTAGTGTCTCCCTGTGCTGCTTCACTAGTGTTCCAATCCACTCTGAGGTTTTTTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTGATAGCCTAGATCGCGCTGAGCTTTCTTATAGGAAATGGTAAACACGCTATTTAGCACTGTGATCAAGAGGCGGTTAAAGGGTGGCCTATAGTTGTAAACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAAAGCAGGGACAGAGGAAGGCTCCAGCCAGAATCAAGGCAGAGGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGAGTCTCCCATTTGTTGCCAGCACTGCCTTCTCAGCCATCCTTTTGCTGTATGGGTATGGGTTAGGCCATGTGCTTTCACGATGCTCTTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAAGTCAAAGG
s HiC_scaffold_1 108528382 970 - 233722169 GGAGCCTGTAGGACTTGGGCTTGTTCCTTTGTCACTTTCTGAACAAAGACATATGGAGGAAGTAAATTAAACTTCCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGG

a score=38574
s chr3            98618967 869 + 160039680 CCTGATAACACCCAGGGCCATGTCCTCGCCCTCCACATATCACTGTGACTTTTTGTGTAGTGTCTCCCTGTGCTGCTTCACTAGTGTTCCAATCCACTCTGAGGTTTTTTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTGATAGCCTAGATCGCGCTGAGCTTTCTTATAGGAAATGGTAAACACGCTATTTAGCACTGTGATCAAGAGGCGGTTAAAGGGTGGCCTATAGTTGTAAACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAAAGCAGGGACAGAGGAAGGCTCCAGCCAGAATCAAGGCAGAGGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGAGTCTCCCATTTGTTGCCAGCACTGCCTTCTCAGCCATCCTTTTGCTGTATGGGTATGGGTTAGGCCATGTGCTTTCACGAT-GCTCTTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCA
s HiC_scaffold_1 108360949 867 - 233722169 CCAGGCATCACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCAT-GGAAGCACA

a score=45557
s chr3            98618975 955 + 160039680 CACCCAGGGCCATGTCCTCGCCCTCCACATATCACTGTGACTTTTTGTGTAGTGTCTCCCTGTGCTGCTTCACTAGTGTTCCAATCCACTCTGAGGTTTTTTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTGATAGCCTAGATCGCGCTGAGCTTTCTTATAGGAAATGGTAAACACGCTATTTAGCACTGTGATCAAGAGGCGGTTAAAGGGTGGCCTATAGTTGTAAACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAAAGCAGGGACAGAGGAAGGCTCCAGCCAGAATCAAGGCAGAGGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTCAGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGAGTCTCCCATTTGTTGCCAGCACTGCCTTCTCAGCCATCCTTTTGCTGTATGGGTATGGGTTAGGCCATGTGCTTTCACGATGCTCTTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAAGTCAAAGGGCCACTGTGGCAATGGGGTCAGACTGGTCTCCATCC-CAACT--CCCGTGAAAGGGCCACTACAGGCTA
s HiC_scaffold_1 108402087 954 - 233722169 CACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTCCCC----CATGGATAACAATCTTGTTCATATCCACAACTTCCCTCTGAAGTGATTTTTGCAGGCTA

a score=44683
s chr3            98618980 894 + 160039680 AGGGCCATGTCCTCGCCCTCCACATATCACTGTGACTTTTTGTGTAGTGTCTCCCTGTGCTGCTTCACTAGTGTTCCAATCCACTCTGAGGTTTTTTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTGATAGCCTAGATCGCGCTGAGCTTTCTTATAGGAAATGGTAAACACGCTATTTAGCACTGTGATCAAGAGGCGGTTAAAGGGTGGCCTATAGTTGTAAACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAAAGCAGGGACAGAGGAAGGCTCCAGCCAGAATCAAGGCAGAGGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTTATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACTTCTTGGGGTCCTGTAGGCTCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGGGTTGGCGATGGAGAATGTGGCATTTTTCTTAATTATGCTGTTGTTCTTC-AGTGCTGTTTTCACAGTGGTTGAAGTGACTTGGCATTCTTCCCCATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAAAGTGCCACCATTTTTCAGGAGTCTCCCATTTGTTGCCAGCACTG-CCTTCTCAG-CCATCCTTTTGCTGTATGGGTATGGGTTAG-GCCATGTGCTTTCACGATGCTCTTCCTCATGGGCATTCAGGATGATCTCCTTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTAGATGAATGTTGGCACACTGGCTTCCACACAAGCATCCAGTAGGAGCTGAGTACCTGCTCATAGGAAGCCCACAATCATTGCTAGGAAATAAGTCAAAGGGCCACTGTGG
s HiC_scaffold_1 108440445 897 - 233722169 AGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTCCCATGG

a score=16111
s chr3            98621067 2026 + 160039680 GAGATGGGAACGTGATTCCCTATAGCACCACCCTACAGTG--------AGGATGAGACAGAGGTAGTTATGCAGAACTAAAAGGGATGCTTGTAGTGTGGTTATGGGCATGCTCAAATAATTAGTTGATTTAGAAA---AGCAAAAGCAAAAACTAGTCACTCCATTTGGAGGTTCCGGAGAGGATACATGGCAGGAAGGATCTTGGAATATA---GTGGTGCTATAAAGACCGAAT-TCAGGATTCAGTGTGGTTATTTTATATGGTAAAA----------------ATTTTAATTTAAAGTCAAATGGAA-TCTACATTCT----GAGGTACTAAGCATTAAGGGATGGGGATCTATGGAGGAG------------AGCTGCTAAGCTCTGCCTAGTACAGATCTTCAAGAATAAACTAATTCCTATCTGAAGAGATGATAATGTGGAAACCGGAATACAATTGTAGTTAAGAAAACAGGCTC-------------------------------------------------CTTT-------------TCCCCCAGGCAGAT---------TATATAGAGCAGTATTGAAGGCTCCTAGGGAGAAAAAGGTCATTGTC---------TGGT------CCGTAGATTCAGTGGGTTGATGGACATCAAATATTTGTATATGGAGTCAATCCAT-------TTTGGTGTAGAGAGGC----AGGAGAACTTTCCTGGCATTTGGAGTATCATGGGTGTGGCTTTATAATCTTTCAGTCATACTGACTA--------CCCCTGGTG--TCACTTTTCATCTTTATGCCTGGTTTCTTTTTCTAAACCCC--GAGGACAATAAACCTGAGT--TCTGCCACCTGTGCTGTTGAGCAGATCATCTGACCTACTCAGAACACAGCAGGTATCCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCCACCTGTTCTAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTTCCCTCCCCAACCTGTCTTGTTCTTTTCATTTTTCAACCTGCTCCATATC-TTCCCCGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTACATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGGGGTCGGGGGGAGGCCTTTCTACA--GAAGG-----AAGCATAAAGACTCAAAAATCAGA-ATGTAGCATTTG---TAGGGAAGCAAGAAGCATCCATATCCACCCCA--TCACTTTGTAGAACATGCACCTGAGCAATAAAGTACCATTTATGTTTTGCAAATAAA------CAAAGAGTTATGGGAAACTCCTGC--ATGCATTAAAGCAACTGGAAAAGTGGTGGCACAGATATGTAAGGAGGGAGAGTAGGATTTAATT--GATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCCAGAGTCCTGCCTTGGGAAAGTGTAACAGTAGTCAGAGGGTGGGTAATAAACTGCCCAGGTGTGAAGACATGAGAGAAATATGGATTAGCAACATGTTAACCAGATTATGTTCTCTGGAGT--------------------TCCAATAAGTAGGATCTAGACTATGGA----CACAAAGATGGACATTTTAGCTTTGCCTTGATAGGTCTTGATATTT-TCTGTGTCTGGGCTATACATAAATGAAGTGTTAGCCCTATTAC------------------------AGAGAAG-CAATTGGAATCTCTGTGAGAGAACCCAGAATGGACTCAAATGA-GTGTTTAGGTGAGCATTTCTTAT-----------------------CAGATAGATCCTT---GTAAATGAGGCAACCTCAAGTGGACCACACTGTGGGCTTGAAGCCAGTGGCAGTGGATA---CATGAGTGTTTTCAGGT-TCCTTTGAAATTTACTGAATGATACAGGCAATCACAATGTCA-------AACAAATCAGCTCACAAAATTAACATGTGTCT-------TGCAGCCTGTACAAATACTCTACCCTGGCTTTAACTTCATACTTTGCACATGA
s HiC_scaffold_1 108388360 2152 - 233722169 GAAATGAAAATCTGCTTACCTATAGCAGCCTTCTGTAATGTGTAGGTAGGGGTTTGGCAGAG-TAG-------GAACTAAAAATGTCCTTTGTAG-ATGTTTttggcaaacaaaaaataattggtTTGTTTAGGAATGGAGCTTCTGCA--------TCATTGAATTTGCA--TTC---AAGGAACTCCTGACAGATGGGGTAAGGAAAGGGACAGGTGGTAATGGAAAGACTGGCCCTCTGGGTTCAGAATGGCAGTGGTACATGGCAAACTTTCTTGAGCTGATGTGTTTCAACTTAAAGCCAGTTGGAAAGCTGCAACCCTAAAGACGCCCCCAGCATTTAAAAATGAGGATCTAaggagtgatttttatttttaggcatcTGATCACAACCTACTACTGGCTT----AAATACAGTAATATA---CTAAAGAGATAATGTTATAGATAATGGAAAATGATTCTTGCTTACAAGATGAGCTTGGGAGATCCATGCTGGACCATTCTGTTGTAACATACTATTGTGCTAGTTCTTTGGAGAGGAAGCCTTCTTCCAGGTGGACAAGGAGCTCTAGATGATGCCTTCATGAAAGTTCTGAATGTGAGCTGAGGCAGCATCAGCAGAATCTGGTTTCACACAGCAGAGGTTTTGAGTGGATGGACATCAA------GAGTGTAGAGTCAGAGGATAGCTGAACCTGCAGTGGAGTAACTGAAGGAAGAATACTCATAGT-TTTGAAGCCAAATATGAATGCTTTTAAATTCTCACTTTCCCCCTGACCAAACATGAGTCCTTGGTgaacttcctttcttttctatccCTGGTATTCTTATCTAAATCACCAGAAAATATTATCTCTGAGTGGTTAGATGACAGTCGTGAGCAACAGCTCAT-----------GGACCACAG------TCTAACAGT-AGTTTTTCTCT----------ATCCT---------TTCTCATCTCTATACC-------ATTCTTC------------------------------------------------------TTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGAT-------GTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCTCTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG-ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggaggaagagaggcagggCTGTGAATAGGATAC---TCACATTGTTATCATGATGTTCAATGTCCT------TTGTGaggacataaaagaaaacaagact-gcaattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagcagtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAAATCA--GTTAAGCTCATCACTAGTGTTTCCTACTTGTGTGACTAGGAGGAGTTGAGTGGAGTCATACACAGAAAATTCAGGATGGGTTCTTCTGATGCACTTAATTGAAAATGTCTTATTATGCATTAAATAATATCAGTAGCAGAT--ATCCATGAAGTGAATGAATCATCTACAAGTGCTTTCCATCCCAACTGTCTAATCAG-GACAGTGGTTACAGCATGAATATGTCCAGACATCAAGTGATACACA---AATGTTTGACACAATGACACTGCCATGATACGGCCAACTCAGTTTACCACAAAAACTCCACTCTCTGCCACTGCAGACTACAGCAACACTCTACATTTGTTTATGCTGTATAACATGCAAACAA

a score=10523
s chr3            98621577 680 + 160039680 AGATTCAGTGGGTTGATGGACATCAAATATTTGTATATGGAGTC-AATCCATTTTGGTGTAGAGAGGC----AGGAGAACTTTCCTGGCATTTGGAGTATCATGGGTGTGGCTTTATAATCTTTCAGTCATACTGACTACCCCTGGTGTCACTTTTCATCTTTAT-----------GC-CTGGTTTCTTTTTCTAAACCCCGAGGACAATAAACCTGAGTTCTGCCACCTGTGC-TGTTGAGCAGAT-CATCTGACCTACTCAGAACACAGCAGGTATCCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCC-ACCTGTTCTAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTTCCCTCCCCAACCTGTCTTGTTCTTTTCATTTTTCAACCTGCTCCATATCTTCCCCGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTACATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCA
s HiC_scaffold_1 108374146 586 - 233722169 AGGTACAGTGTG--GATGGATATCAGAAGTGCAGGATTGGAGTCTCGTCTACCTCAGAATGCAGGAGTTGTTAGAAGA-----TCTGGC-TTGGGAGTTAAATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCC-TTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGAC----CAGAACCCAGAAG------CAGTGGAGCTTCTCCTCTTTTTGCTAC-------TTCACCTACCATCATTTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTG-----------------------------------------------------------------------------CCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT---------GGTGGGAACTTTTTA----AAGTGATGGTTATCTTTGACTTCAAGGATA

a score=12992
s chr3            98621591 925 + 160039680 GATGGACATCAAATATTTGTATATGGAGTCA-ATCCATTTTGGTGTAGAGAGGC----AGGAGAACTTTCCTGGCATTTGGAGTATCATGGGTGTGGCTTTATAATCTTTCAGTCATACTGACTAC--------CCCTGGT--GTCACTTTTCATCTTTATGCCTGGTTTCTTTTTCTAAACCCCGAGGACAATAAACCTGAGTTCTG-CCACCTGTGCTGTTGAGCAGAT-CATCTGACCTACTCAGAACACAGCAGGTATCCCATGGTTGGCCCTTCTCTTTCTGTCATAATCCTGTTGGGACATCCTCATTTACCCACCTGTTCTAACTCTTCCTCCAGGTGTTCCAAACTAGGTGCTTCCCTCCCCAACCTGTCTTGTTCTTTTCATTTTTCAACCTGCTCCATATCTTCCCCGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTACATGGGATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTG-AGAAGACACTGGGGGTCGGGGGGAGGCCTTTCTACAGAAGGAAGCA--TAAAGACTCAAAAATCAGAATGTAGCATTTGTA---GGGAAGCAAGAAGCATCCATATCCACCCCATCACTTTGTAGAACATGCACCTGAGCAATAAAGTACCATTTATGTTTTGCAAATAAA------CAAAG--AGTTATGGGAAACTCCT-GCATGCATTAAAGCAACTGGAAAAGTGGTGGCACAGATATGTA-AGGAGGGAGAGTAGGATTT
s HiC_scaffold_1 108301515 815 - 233722169 GGTGAATAACAAAAGTGAAGAGTTGAAATCAGATAGATCTTGGAATGGAGGAGCTGTAGGCAGAGCTTTCTTGGTCTTTGAATCA-CACAGGTGTGAATTTACATTCTGGTCATCTTAGTGACTACAGCGGGGGCTTTGGcaagtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAATG-----GAGCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGG----TCAAAGCCCAACATCAGTTCCATGGTGgggc-ttctctttc------------------------------------------------------------------------------cctctcca-tcTGTTGTGTTGTCTTC-CTTTGCAACTGGCTTT---------CAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGT------------------GTGTCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgttt-------------cagttttctgagaaagG------ATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTA-----TGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGG-ACAGTTACATACAAGATGAAAAATCAGACTT

a score=18133
s chr3            98621910  967 + 160039680 CTCCAGGTGTTCCAAACTAGGTGCTTCCCTCCCCAACCT-GTCTT-GTTCTTTTCATTTTTCAACCTGCTCCATATCTTCCCCGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGGACAGAAA--GCAGGGTCTTTGGAAGCTTTGTACATGGG-ATGGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGGGGTCGGGGGGAGGCCTTTCTACAGAAG-----GAAGCATAAAGACTCAAAAAT--CAGAATGTAGCATTTGTAGGGAAGCAAGAAGCATCCATATCCACCCCATCACTTTGTAGAACATGCACCTGAGCAATAAAGTACCATTTATGTTTTGCAAATAAA-------CAAAGAGTTATGGGAAACTCCTGCATG--CATTAAAGCAACTGGAAAAGTGGTGGCACAGATATGTAAGGAGG-GAGAGTAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCCAGAGTCCTGCCTTGGGAAAGTGTAACAGTAGTCAGAGGGTGGGTAATAAACTGCCCAG-------GTGTGAAGACATGAGAGAAATATGGATTAGCAACATGTTAACCAGATTATGTTCTCTGGAGTTCCAATAAG---------TAGGATCTAG-ACTATGGACACAAAGATGGACA----------------TTTTAGCTTTGCCTTGATAGGTCTTGATATTT-TCTGTGTCTGGGCTATACATAAA--TGA--------------AGTGTTAGCCCTAT-------TACAGAGAAGCAATTGGAATCTCTGTGAGAGAACCCAGAATGGACTCAAATGA-GTGTTTAGGTGAGCATTTCTTAT
s HiC_scaffold_1 108444643 1013 - 233722169 CTGCAGGTGTTCCACA-GGGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGT----------TGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGAT--AAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATT-----CAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGG------CTGTGAAAAG------GGTACTCACA---TTGGTACCACAATGTCCAGTGACCTTTTGTGaggatacaaaagaaaacaagact-gcAGTGCACTAATCAGAATGTCTCTGCCAGAATTC--ATAAGAGggcaaaccaggtcccagcagtaggaagagaagaagggagaacCACAAGCCATCAGTTTCAGGCTTTCCCATAACAGGTCTGGGTATGTAACTTTGTCTTGGATGTGCAGAAAACTGATTAAGCTCATCCCTAGTGTTTCCTACATGTGTAACTAGGAGGAGGTAAGTG--AGCCATGCCAGAGAATTCAGGATTGGCTCTTCTGATGGGCtttattgaaaatgttttat

a score=16513
s chr3            98621913 664 + 160039680 CAGGTGTTCCAAACTAGG-----TGCTTCCCTCCCCAACCTGTCTTGTTCTTTTCATTTTTCAACCTGCTCCATATC-TTCCCCGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTACATGGGATGGAAGTTTCCTGATACAGGTGTCATT---TATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGGGGTCGGGGGGAGGCCTTTCTACAGAAGGAAGCATAAAGACTCAAAAAT--CAGAATGTAGCATTTGTAGGGAAGCAAGAAGCATCCATATCCACCCCATCACTTTGTAGAACATGCACCTGAGCAATAAAGTACCATTTATGTTTTGCAAATAAACAAA----------GAGTTATGGGAAACTCCTGC--ATGCATTAAAGCAACTGGAAAAGTGGTGGCACAGATATGTAAGGAGG-GAGAGTAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA-----AGGAGAAACAGAGCCAGAGTCCTG
s HiC_scaffold_1 108405600 682 - 233722169 CAGGTGCTCTACAGGGggacttctctttcccttctcatcCC-TCTTGCCATTTT---TTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT-TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTAATCTCTGATGAGTATC------ATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgaggcagtgtTGTG

a score=20489
s chr3            98621933 1319 + 160039680 CTTCCCTCCCCAACCTGTCTTGTTCTTTTCATTTTTCAACCTGCTCCATATC-TTCCCCGGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGT-CTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACAGAAAGCAGGGTCTTTGGAAGCTTTGTACATGGGATGGAAGTTTC-CTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGGGGTCGGGGGGAGGCCTTTCTACAGAAGGAA-----GCATAAAGACTCAAAAA--TCAGAATGTAGCATTTGTAGGGAAGCAAGAAGCATCCATATCCACCCCATCACTTTGTAGAACATGCACCTGAGCAATAAAGTACCATTTATGTTTTGCAAATAAACAAAGAGT--------TATGGGAAACTCCTGCATG--CATTAAAGCAACTGGAAAAGTGGTGGCACAGATATGTAAGGAGGGAGA-GTAGGATTTAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGAGCCAGAGTCCTGCCTTGGGAAAGTGTA---ACAGTAGTCAGAGGGTGGGTAATAAACTGCCCAGGTGTGAAGACATGAGAGAAATATGGATTAGCAACATGTTAACCAGATTATGTTCTCTGGAGTTC-CAATAAG------TAGGATCTAG-ACTATGGACACAAAGATGGACA----------------TTTTAGCTTTGCCTTGATAGGTCTTGATATTTTCTGTGTCTGGGCTATACATAAA------TGAAGTGTTAGCCCT-------------------ATTACAGAGAAGCAATTGGAATCTCTGTGAGAGAACCCAGAATGGACTCAAATGA-GTGTTTAGGTGAGC--ATTTCTTATCAGATAG-------ATCC----------TTGTAAATGAGGCAACCTCAAGTGGAC------CACACTGTGGGCTTGAAGCCAGTGGCAGTGGATACATGAGTGTTTTCAGGTT-CCTTTGAAATTTACTG---------AATGATACAGGCAATCACAATGTCAAACAAATCAGCTC---ACAAAATTAACATGTGTCTTGCAGCCTGTACA--AATACTCTACCCTGGCTTTAACTTCATACTTT----GCACATGATTTTCTTGGTTTGCTC-TTTCCTTTCCCAACTATGTCATGATATCAGGCATTC--ATTCTGATGTCC--CTGGCATAGGTTGGGGAAC-----CACAGATGGCCCCAGGGACATGATTCAGGACACACATCTGCCCAGTGAAGGGCCTAATGTCTCT-CTGCCTCCTTCT
s HiC_scaffold_1 108531391 1414 - 233722169 CTCTCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCA-CACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA-AGTCGACA-Gtacatagacttttaaaaatattcatagcaaggagatatc-----caggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTGACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATG-----AACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAG-ATAGTTTGATACAGAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAGGCAG------GCCTGTGAATAGGACACTTACCTTGGCGCCAGGATGTCCAATATACTGT-----TGTGAGGATATAAGAGAAAACAGGGCTA-CAATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGAGCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCAGAAAAATCAGTTAAGC-TCATCCCTAGTGTTTCCCACTTGTGTGACTAGGAGGAGGTGAGTGGAGTCCTACCAAGAGAATTCCAGTTGAGCTCTTTTGATGGACTTAATTAATCTTATTGTGTGTCAAATAATATCAATATCCAGCATGCATGATACAAATGAGTCATCTACAAGTGATTTCCATACAAGCTGTCTAGTCCAGGACAGTGGCTGCA---ACATGAAGGTGTCCATATGACAAGTGAGACTCACCTGTGTGATGCAATGATACTGACAGTGACAAGACCATCCTAATTTAATCCAGAAAAACCCATCCTGTGCCACACATAGTATCCATCAACACTCGACATTTGTTTGTGCTGCACAGTTTACAAGCAAATGA-----ACAGttgactcattttttttcctaaagaccTTGTTGGAG-AGGAATTCTGATTCTGCTTTCTCACCTGCTTagctgaggaaactgaagctcagcaGGCTCTAGGGACCCAACTGAGTACAAA---GTG-GCAGTG-AGGTCTCAActcctctcctgcctccttcT

a score=13699
s chr3            98621948 461 + 160039680 TGTCTTGTTC--TTTTCATTTTTCAACCTGCTCCATATCTTCCCC-GGGTACTGCACCTTTCAGATTGACATCTAGGATGGTCTGTCTGGAAGCGGCACCAAGGGGGTCAATAGCAGCAGCGGTGTGGATGACAGCAGACATGCCCTGGCAGGCTCTCTTCAGGCATTGGGCATCCAGAATGTCTCCCTTCAGTACTCTCACCTTGGCCTTTGTCTGCAGCTCTGTGG-ACAGAAAGCAGGGTCTTTGGAAGCTTTGTACATGGGAT-GGAAGTTTCCTGATACAGGTGTCATTTATGTAGGTCTTCAAGGGCAGTCATGGTGAGAAGACACTGGGGGTCGGGGGGAGGCCTTTCTACAGAAGG---AAGCATAAAGA---CTCAAAAATCAGA--ATGTAGCATTTGTAGGGAAGCAAGAAGCATCCATATCCACCCCATCACTTTGTAGAACATGCACCTGAGCAATAAAGT
s HiC_scaffold_1 108365753 463 - 233722169 tgtGTTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGCAG-GCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGATG-TAGAGGTC----AGAGGTCATTCCTTGAAaggaacaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTATATCTCA-----TTGCAGAGTAGGAATCTGAATAACTATGT

a score=9408
s chr3            98629668 549 + 160039680 AAAGTTAAATATGAAGCAGG---TTAGGATTATCAAA-GAGGCTTAGATCCACTGCTAAGGTCTCTAGTTCAATAATCTTTTGTTAGTATTACAACATATTACAAAATGTTGAAAATATTGACAAGTCCATTCCATTTAGGACATAAAAGAGCTTCCAGCGAAGGCGAAAATTGATCTGCAGTGTCTAAATAGGA--GAGAGACCTTTAGCCTCAGGGCCTGC-----CCATGACCAGTTGTGTATGAGACCTGAATTCATTTT--ATCCAACTATACTGTGACTTTTGTGCTGTGCCAACTGCAAATGTTGTT--------------TACAGATCC------ACCTGAATTTTTTGCTATAGACAAGAGAGCCTTCCTTACACCTCGTCCA-------------------TATCCCCCAACCCCTAAATCACTTACTGGACAATTCCTCTTCATGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAACTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGGCATGTTCAACACAGGAATCAGA
s HiC_scaffold_1 108534582 564 - 233722169 aaaactaaagacaAGAAAAGGGCCCAGGGAAATCAAATGAGGCAAAGTTCCACTACTGCAACCTCCAGCTTAGTAGTACTTTGCCTGTTTTGCA---------------TAGTAATCACTGA------------ACTGAGCACATTAATTAGCTACAAGAGA-GGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGAGAAGTTTACC-----AGCCTGTGTCCACCTTGTCTAGTACTG-AGCAGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGATTACTCCTGGTGAGTGTGGACACACAGAGCCTTAGGGCTCcaagttctttttcat---ttcaggAGCATCCCTCTCTACTCACTCAGGCTTTCACAGTGGAGGCCCACACTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGA

a score=8135
s chr3            98630022 553 + 160039680 GTCCATATCCCCCAACCCCTAAATCACTTACTGGACAATT----CCTCTTCATGTTTTCGACCGAAGGTCCTGAACAGGGCTC-TGATCTCCTGCAACTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGGCATGTTC-AACACAGGAA-TCAGATAGTTGAGGATATAGATGTGAT-ATAAAGTGTTCCTGT------------GGAGTGATTCAATGTGTACAGAGTCATGGAATTCCTACTA-CACTTACATACTAGAAAAAATGTCCTGAAGCTAATTTCACCCATTTCTCTCATAAGAC--ATCacttctctggtaccaaatcttgtggg-atattctctaagaaacaaggaaaaaataaaatcaaaaccagagtacaaatatgcactggacaccag--atatgcaatctctat------------cttagatcatctctgacactgaggcactactttagactgttcccaagcttgcctctctcac--cttagatgccaattacaaactctggattgtcttacctgtgcttatgagaaac
s HiC_scaffold_1 108302904 547 - 233722169 GTCCACTCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAA---GTGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAAGGCA--CAAGGAT-CAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGG-CATATAAG--CCACTAGTGATGACACA-GAGAAAAAAC-TACTCAAACTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGCAGATATTTTCCCCACCAGATGTGA-------AAAATCATTGCTACAGTA-------------AGCAGCAGTTCTATCTGACCCCGATTATCTGGAGAGACTCAGATCAT--------ATAGGGAAAAGCCTT----TGTTCAC---CTTTGTTCTGGCACAGTTCAGATGCCAGTTACAACCTCCAGGTTATTTTATCTGTGCTTCTGAGCAAC

a score=9077
s chr3            98630035 231 + 160039680 AACCCCTAAATCACTTACTGGACAATTCCTCTTCATGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAACTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGGCATGTTCAACACAGGAATCAGATAGTTGAGGATA-TAGATGTGATATAAAGTGTTCCTGTGGAGTGATTCAA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATG--ACTCTGGAGTGGGTTAA

a score=10169
s chr3            98630035 231 + 160039680 AACCCCTAAATCACTTACTGGACAATTCCTCTTCATGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAACTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGGCATGTTCAACACAGGAATCAGATAGT--TGAGGATATAGATGTGATATAAAGTGTTCCTGTGGAGTGATTCAA
s HiC_scaffold_1 108410524 231 - 233722169 AATTTCCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGAT-CAGATGTGATGATAGGTGACTCTGGAGAg-gattaaa

a score=8827
s chr3            98630040 235 + 160039680 CTAAATCACTTACTGGACAATTCCT-CTTCATGTTTTCGACCGAAGGTCCTGAACAGGGCTCTGATCTCCTGCAACTCTTCCTCCTGCACCAACATTCGGACAATCCTCTGGCCAAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGGCATGTTCAACACAGGAATCAG---ATAGTTGAGGATATAGATGTGATATAAAGTGTTCCTGTGG----------------AGTGATTCAATGTGTACAG
s HiC_scaffold_1 108393334 252 - 233722169 CCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTG-GTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAG-TGAGCA-GCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAG

a score=6345
s chr3            98669885 132 + 160039680 GGCATTCTTCCCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAGTTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAG
s HiC_scaffold_1 108298896 131 - 233722169 GGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAG

a score=7089
s chr3            98669885 132 + 160039680 GGCATTCTTCCCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAGTTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAG
s HiC_scaffold_1 108529031 132 - 233722169 GGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAG

a score=7181
s chr3            98669885 132 + 160039680 GGCATTCTTCCCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAGTTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAG
s HiC_scaffold_1 108402654 132 - 233722169 GGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAG

a score=6878
s chr3            98669885 140 + 160039680 GGCATTCTTCCCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAGTTTTCAAAATGCTCCCATTGGCTGTCAGCACTG-CCTTCTCA-CACATCTTTTTGCTGTATGGGTATGGCTCAGGGTCAGAT
s HiC_scaffold_1 108441008 142 - 233722169 GGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATAT

a score=6431
s chr3            98669885 127 + 160039680 GGCATTCTTCCCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAGTTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGG
s HiC_scaffold_1 108361524 125 - 233722169 GGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGG

a score=8589
s chr3            98671917 382 + 160039680 GTTCCTTCTTCACTCAG-TATGGTTTTTCATCTA--AACACCAAGCAGAAGAGTCCAGATTTCTGCCTCCTGGTAAGTAAGGAGACACATGTGGCCTAGGCAGAGCACAGCAAGTATACCACTATTCTTCAAGTTGTTCCAAAGTAGGG----GCTTCCCTCCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATCCTCCTATGGAACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAACAGCAGTGTGAATGACAGCAGAAATTCTCTGGCAGGCTTTCCTCAGGCACTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTGGT-GTTGTCTGCAGCTCT
s HiC_scaffold_1 108301657 333 - 233722169 gtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAA-----TGGAGCTCTGTCCATTGG-AAGTGATGAG-CAAATGCACCTGGGTCAAAGCCCAACA----------------TCA----GTTCCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTC-CTTTGCAACTGGCTTT---------CAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAATTGT--GTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCT

a score=9944
s chr3            98672045 254 + 160039680 AGTTGTTCCAAAGTAGGGGCTTCCCTCCCCAACCTGTCTTAT------GGTTTTCATTTTCCAACCTGCTCCATATCCTCCTATGGAACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAACAGCAGTGTGAATGACAGCAGAAATTCTCTGGCAGGCTTTCCTCAGGCACTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTGGTGTT-GTCTGCAGCTCT
s HiC_scaffold_1 108444647 246 - 233722169 AGGTGTTCCA---CAGGGGTT--CTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGTTGCTCTA----------CCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCT

a score=10270
s chr3            98672061 241 + 160039680 GGGCTTCCCTCCCCA-----ACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATC-CTCCTATGGAACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAACAGCAGTGTGAATGACAGCAGAAATTCTCTGGCAGGCTTTCCTCAGGCACTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCA-CTTTGGTGTTGTCTGCAGCTCTTTG
s HiC_scaffold_1 108531383 247 - 233722169 GGGCTTCACTCTCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTG

a score=9968
s chr3            98672065 237 + 160039680 TTCCCTCCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATC-CTCCTATGGAACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAACAGCAGTGTGAATGACAGCAGAAATTCTCTGGCAGGCTTTCCTCAGGCACTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTGGTGTT-GTCTGCAGCTCTTTG
s HiC_scaffold_1 108405626 235 - 233722169 ttcccttctcatcCC-TCTTGCCATTTT---TTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTG

a score=8320
s chr3            98672070 232 + 160039680 TCCCCAACCTGTCTTATG--------GTTTTCATTTTCCAACCTGCTCCATATCCTCCTATGGA-ACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAACAGCAGTGTGAATGACAGCAGAAATTCTCTGGCAGGCTTTCCTCAGGCACTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCA-CTTTGGTGTTGTCTGCAGCTCTTTG
s HiC_scaffold_1 108389249 240 - 233722169 TCTCTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTG

a score=8179
s chr3            98672079 223 + 160039680 TGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATCCTCCT-ATGGAACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAACAGCAGTGTGAATGACAGCAGAAATTCTCTGGCAGGCTTTCCTCAGGCACTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTGGT-GTTGTCTGCAGCTCTTTG
s HiC_scaffold_1 108365755 224 - 233722169 tGTTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTG-AGCAGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTG

a score=8974
s chr3            98678167 256 + 160039680 AACCTCCAAATCACTTACTGGACAATTTCTTTTCCTATTTTTTGACTGAAGGTCCTGAACAGGGCTCTGTTCTCCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCTTCCTGCTCCTGTCACCAGGCAGCTCCATTCAGGCATGGTTAACACAGGAAGCAGAA---AGTTCAAGTTGCATATGTAATTTATGGTGGTCCCGTGGAGT---------------GGTTCAATGTGTACAGAGTCAAGGAATTGCT
s HiC_scaffold_1 108410524 271 - 233722169 AATTTCCAGTCCACTTACTGGAGAATT-CTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGT--GAGGATCAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAGGGCACATAAAGTGCT

a score=9103
s chr3            98678167 232 + 160039680 AACCTCCAAATCACTTACTGGACAATTTCTTTTCCTATTTTTTGACTGAAGGTCCTGAACAGGGCTCTGTTCTCCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCTTCCTGCTCCTGTCACCAGGCAGCTCCATTCAGGCATGGTTAACACAGGAAGCAGAA---AGTTCAAGTTGCATATGTAATTTATGGTGGTCCCGTGGAGTGGTTCAA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATT-CTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGT--GAGCAGCAGGTGTGATGATAGATGACTC--TGGAGTGGGTTAA

a score=8701
s chr3            98678169 182 + 160039680 CCTCCAAATCACTTACTGGACAATTTCTTTTCCTATTTTTTGACTGAAGGTCCTGAACAGGGCTCTGTTCTCCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCTTCCTGCTCCTGTCACCAGGCAGCTCCATTCAGGCATGGTTAACACAGGAAGCAGAA
s HiC_scaffold_1 108534966 181 - 233722169 CCCACAGCTCACTTACTAGAGAATT-CTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAA

a score=8537
s chr3            98678171 323 + 160039680 TCCAAATCACTTACTGGACAATTTCTTTTCCTATTTTTTGACTGAAGGTCCTGAACAGGGCTCTGTTCTCCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCTTCCTGCTCCTGTCACCAGGCAGCTCCATTCAGGCATGGTTAACACAGGAAGCAG---AAAGTTCAAGTTGCATATGTAATTTATGGTGGTCCCGTGG----------------AGTGGTTCAATGTGTACAGAGTCAAGGAATTGCTACTATACTTACATAGTAGAAAAATGTCCTGATGCTAATTTCACCCAT-TCCTCTCATAA---GATATCACTTCTC
s HiC_scaffold_1 108393333 334 - 233722169 TCCAGTTCACTTCCTAGAGAATT-CTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGT--GAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAGGACACACAAACTTCTTCTA-------ATGTCAGAGAGAGGAATTACT--CAATTTGACCTTTGTACTCTCATACTTTGTTATGACTTCTC

a score=7552
s chr3            98678177 360 + 160039680 TCACTTACTGGACAATT---TCTTTTCCTATTTTTTGACTGAAGGTCCTGAACAGGGCTC-TGTTCTCCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCTTCCTGCTCCTGTCACCAGGCAGCTCCATTCAGGCATGGTT-AACACAGGAAGCAGAAAGTTCAAGTTGCATATGTAATTTATG-GTGGTCCCGT------------GGAGTGGTTCAATGTGTACAGAGTCAAGGAATTGCTACTATACTTACATAGTAGAAAAATGTCCTGATGCTAATTTCACCCATTCCTCTCATA--AGATATCACTTCTCTGATCTCAAATCTTGTGGG-ATGTTCCCTAAGAAGCAAGAAAAA
s HiC_scaffold_1 108302927 373 - 233722169 TCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGT--AAGGCACAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTA--GTGATGACACAG-AGAAAAAACTACTCAAACTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGCAGATATTTTCCCCACCAGATGTGAAAAA

a score=31164
s chr3            98680333 1370 + 160039680 ATCTGTTCCTGAATTT--CACC--TAAGCTTACCTAATATCCATGATTTCTCTGATCTCAGAGTGGCCATGTCTAGACACAGAAGGGGCATAGA-ATTATTTACTTACAGAAAA---ACACAATCTATAGATGAGGTATTGAGAAATATTTATTGCTCTTTCCAATGGGCTTCATAAAGTAAGCAGAATTTTCTGAAGGGTAGACATGATTTGATG-TGGAGAGAAAATCATGG--------TGAGATTTCCGAGGTACAAGAGGTGCTGAGAAGGTTGGACC----------------CTGGAACTGGGGCACAGCTGCTGTGAGTCTCTGGGTAGGGTCTTCAAGG-AGAAGGCTTGTGGCTGGGTCAGTGACTGACAAGGCTTTCAGTGACT--TGATTGAGACTCTAAGATCCTCTGTATCAAAGAGAAGCATCAGG--ACCCGGGTTGTGTGCCTGTCCCTGCTAGAGGA---------CCTGATAACCCCTAGGGCCATGTGCTCTCCCTCCTCATATCACTGTGACTTTCTGTTTTTGTGTCTCCCTGTGGTGCTTTAATAGTTCTGATCCATTCCAAGGTTTTCTGCTTGGCTTCCTCTCAGCTGACAAGTAGCT--------------TGCTGAGCTTTCTTGTAGGAGATGGTAAGCAAGCTATTTAGCAGTGTGATCAAGAAGCAGTTAAAGGGTAACCTAGAGTTGTTGGCAGGACATAGCAGGAGGCCCACAGTTTCCAGTAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGAATCAAGGTGGAG--GCCCCAATCCTTGCTCAGGGTGTAATTTAAATCATCATAGCATTGGTGAGTGGTGTCATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACT--TTGGGGTCCTTTAGGCCCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGTCTTGGCTATGGAGTGTGGGGC-ATTTTTTAAAAATTATGTTATTGTTCTTCAGTGGTATAGTCAGAGTGGTTGAAGGAATTTGGCATTCTTCTCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAATTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAGGCCATGTGCTTTCATGATGCTCTTCCTCATGGCCATTGAGTATGATCTCTGTGTAGGAATTTGGTCCAGCCACAAGCACT-GAGCTGCTGTA--TATGGATGCTTGCACACTGGCTTCCACACAAACTTCTAATAGGAGCTGAGAACGAGCACATAAAAAGTTCACGATTACTGGTAGTATATAAGACAAAGGACCCACTGTGACAATGGGGTCAGATTGGTCTCCACTCTAAATCCTGTGGAAG
s HiC_scaffold_1 108297893 1359 - 233722169 ATCCCATCCTGACTTTACCACCACTCTGCCCATCCCAGTTACATGATCCTTCTGAACTACAGAAGGCCATGTTtggaaatggaaggaaaatgtATATTATTAAC------AAAACTCATACTTTCTTTATATTAGTCCT---AaagcatttattgtttttcctaA---GCTTTATGCAAAATG-AgagtttttcaaagaaaagaaacaatttaacaaTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAAACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCT-TGTTTTTCCTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTGGCCACTGCTTGAAA----------------AGCAGTGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCC---TCTGAGTCCCCTTGTG--------------CTGATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTA---CATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATG---ATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAACA-----GAGTCATT------------TCAGGTTCATTTTCACTTCCTCCCCAGCGGAAG

a score=35146
s chr3            98680679  982 + 160039680 AGGCTTTCAGTGACTTGATTGAGACTCTAAGAT-CCTCTGTATCAAAGAGAAGCATCAGGACCCGGGTTGTGTGCCT------------------GTCCCTGCTAGAGGACCTGATAA-------------CCCCTAGGGCCATGTGCTCTCCCTCCTCATATCACTGTGACTTTCTGTTTTTGTGTCTCCCTGTGGTGCTTTAATAGTT--CTGATCCATTCCAAGGTTTTCTGCTTGGCTTCCTCTCAGCTGACAAGTAGCTT--------------GCTGAGCTTTCTTGTAGGAGATGGTAAGCAAGCTATTTAGCAGTGTGATCAAGAAGCAGTTAAAGGGTAACCTAGAGTTGTTGGCAGGACATAGCAGGAGGCCCACAGTTTCCAGTAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGAATCAAGGTGGAGGCCCCAATCCTTGCTCAGGGTGTAATTTAAATCATCATAGCATTGGTGAGTGGTGTCATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACT--TTGGGGTCCTTTAGGCCCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGTCTTGGCTATGGAGTGTGGG---GCATTTTTTAAAAATTATGTTATTGTTCTTCAGTGGTATAGTCAGAGTGGTTGAAGGAATTTGGCATTCTTCTCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAATTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAGGCCATGTGCTTTCATGATGCTCTTCCTCATGGCCATTGAGTATGATCTCTGTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTATATGGATGCTTGCACACTGGCTTCCACACAAACTTCTAATAGGAGCTGAGAACGAGCACATAAAAAGTTCACGATTACTGGTAGTATATAAGACAAAGGACCCACTGTG
s HiC_scaffold_1 108401957 1029 - 233722169 AGGCATTTTGTAGCCTTATGAAGACAATAAGTTGCCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCT-TGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGT-CTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAG----TATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTCCCCCATG

a score=30578
s chr3            98680770 847 + 160039680 CCTGATAACCCCTAGGGCCATGTGCTCTCCCTCCTCATATCACTGTGACTTTCTGTTTTTGT-GTCTCCCTGTGGTGCTTTAATAGTT--CTGATCCATTCCAAGGTTTTCTGCTTGGCTTCCTCTCAGCTGACAAGTAGCTTGCT--------------GAGCTTTCTTGTAGGAGATGGTAAGCAAGCTATTTAGCAGTGTGATCAAGAAGCAGTTAAAGGGTAACCTAGAGTTGTTGGCAGGACATAGCAGGAGGCCCACAGTTTCCAGTAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGAATCAAGGTGGAGGCCCCAATCCTTGCTCAGGGTGTAATTTAAATCATCATAGCATTGGTGAGTGGTGTCATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACTT--TGGGGTCCTTTAGGCCCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGTCTTGGCTATGGAGTGTGGGGC---ATTTTTTAAAAATTATGTTATTGTTCTTCAGTGGTATAGTCAGAGTGGTTGAAGGAATTTGGCATTCTTCTCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAATTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAGGCCATGTGCTTTCATGAT-GCTCTTCCTCATGGCCATTGAGTATGATCTCTGTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTATATGGATGCTTGCACACTGGCTTCCACACAAACTTCTAATAGGAGCTGAGAACGAGCACATAAAA
s HiC_scaffold_1 108360949 862 - 233722169 CCAGGCATCACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTT--GTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCT----CACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCATGGAA

a score=33925
s chr3            98680804 851 + 160039680 TCATATCACTGTGACTTTCTGTTTTTGTGTCTCCCTGTGGTGCTTTAATAGTT--CTGATCCATTCCAAGGTTTTCTGCTTGGCTTCCTCTCAGCTGACAAGTAGCTT--------------GCTGAGCTTTCTTGTAGGAGATGGTAAGCAAGCTATTTAGCAGTGTGATCAAGAAGCAGTTAAAGGGTAACCTAGAGTTGTTGGCAGGACATAGCAGGAGGCCCACAGTTTCCAGTAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGAATCAAGGTGGAGGCCCCAATCCTTGCTCAGGGTGTAATTTAAATCATCATAGCATTGGTGAGTGGTGTCATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACT--TTGGGGTCCTTTAGGCCCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGTCTTGGCTATGGAGTGTGGG---GCATTTTTTAAAAATTATGTTATTGTTCTTC-AGTGGTATAGTCAGAGTGGTTGAAGGAATTTGGCATTCTTCTCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAATTTTCAAAATGCTCCCATTGGCTGTCAGCACTG-CCTTCTCA-CACATCTTTTTGCTGTATGGGTATGGCTCAG-GCCATGTGCTTTCATGATGCTCTTCCTCATGGCCATTGAGTATGATCTCTGTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTATATGGATGCTTGCACACTGGCTTCCACACAAACTTCTAATAGGAGCTGAGAACGAGCACATAAAAAGTTCACGATTACTGGTAGTATATAAGACAAAGGACCC
s HiC_scaffold_1 108440466 870 - 233722169 TCACATCACTGAGTCTTTGT-CTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAG----TATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGGAA-CACAGGATCAGCATCAATAAATAACCCAGAGGTCTC

a score=35805
s chr3            98680804 915 + 160039680 TCATATCACTGTGACTTTCTGTTTTTGTGTCTCCCTGTGGTGCTTTAATAGTT--CTGATCCATTCCAAGGTTTTCTGCTTGGCTTCCTCTCAGCTGACAAGTAGCT--------------TGCTGAGCTTTCTTGTAGGAGATGGTAAGCAAGCTATTTAGCAGTGTGATCAAGAAGCAGTTAAAGGGTAACCTAGAGTTGTTGGCAGGACATAGCAGGAGGCCCACAGTTTCCAGTAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGAATCAAGGTGGAGGCCCCAATCCTTGCTCAGGGTGTAATTTAAATCATCATAGCATTGGTGAGTGGTGTCATCAGAGATGTAATAGAACTGTCCTTGGATGCTTGGGGACT--TTGGGGTCCTTTAGGCCCCTGGCAGCCAGAATGTGAGCCCAGGCTGCATTGCCCACATACACTGTCTTGGCTATGGAGTGTGGG---GCATTTTTTAAAAATTATGTTATTGTTCTTCAGTGGTATAGTCAGAGTGGTTGAAGGAATTTGGCATTCTTCTCTATAGATGAAAGGGAGTCTTAAGGCACAAGTATGCAATGTGCCACCAATTTTCAAAATGCTCCCATTGGCTGTCAGCACTGCCTTCTCACACATCTTTTTGCTGTATGGGTATGGCTCAGGCCATGTGCTTTCATGATGCTCTTCCTCATGGCCATTGAGTATGATCTCTGTGTAGGAATTTGGTCCAGCCACAAGCACTGAGCTGCTGTATATGGATGCTTGCACACTGGCTTCCACACAAACTTCTAATAGGAGCTGAGAACGAGCACATAAAAAGTTCACGATTACTGGTAGTATATAAGACAAAGGACCCACTGTGACAATGGGGTCAGATTGGTCTCCACTCTAAATCCTGTGGAAGGGCTATTACAGATCTA
s HiC_scaffold_1 108528490 928 - 233722169 TCACATCACTGAGTCTTTGT-CTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAG----TATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGGAA-CACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTCCCCCATGGATA-AGAATCATGTTCATATCCAGT-TCCTCCCCATGAGGTGATTAATACAGATCTA

a score=10941
s chr3            98683642 607 + 160039680 GTCTTGTCCATAGT-GGCAGTGGGTGGATGGAAATCAAGCATGTGGAGATGGAGTCCAGT-TAC----AAGGTTGGGAAGGGTCAGGGGAATGTTCTAGGCAATGAGAGTACACTGGATGTGACTATAAACTTTT--TCTCCTGCTG-------------------------TTCCTTCTTCACTCAGTAT--GGTTTTTCATCTAAACACCAAGCAGAAGAGTCCAGATTTATGCCCCCTGGT--CAGTAAGGAGATACATGTGGCCTAGGCAGAGCACAGCAAGTATCGCACTATTCTTCAAGTTGTTCCAAAGTAGGGGCTTCCCTCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATCCTCCTATGG-TACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTGG-CTCTGTCTGCAACTCTTTGG--ATGCAAATCAGGTGCTTAGGAAGCTTTCTGCATGGGATGGAAGTTTCCAGACACAGTTGTCAGTTATGCCTATCTTCAAGGGTA
s HiC_scaffold_1 108374132 600 - 233722169 GTCTTTTCTAGAAAAGGTACAGTGTGGATGGATATCAGAAGTGCAGGATTGGAGTCTCGTCTACCTCAGAATGCAGGAGTTGTTAGAAGA----TCTGGCT--TGGGAGTTAAATAGATGCAAGTTTAAATTTTTGCCCTTCTACTGACTACTTTTAGAGCCTTTATcatctttcttgtctttctcagCACTAGCTTTTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGAC----CAGAACCCAGAAGCAGTGGAGCTTCTCCTCTTTTTGCTAC----------TTCACCTACCATCAT---------------TTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT--------GGTGGGAACTTTTTA-----AAGTGATGGTTATCTTTGACTTCAAGGATA

a score=11982
s chr3            98683780 698 + 160039680 GTTCCTTCTTCACTCAG-TATGGTTTTTCATCTA--AACACCAAGCAGAAGAGTCCAGATTTATGCCCCCTGGTCAGTAAGGAGATACATGTGGCCTAGGCAGAGCACAGCAAGTATCGCACTATTCTTCAAGTTGTTCCAAAGTAGGGGCT-----TCCCTCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATCCTCCTATGGTACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTGG-CTCTGTCTGCAACTCTTTGG--ATGCAAATCAGGTGCTTAGGAAGCTTTCTGCATGGGATGGAAGTTTCCAGACACAGTTGTCAGTTATGCCTATCTTCAAGGGTAGTCATGGTG-AGAAGACACTG-GAGAGGAGGACTTTCTACAGAAGGAAGCA--TAAATGCTCAAAAATCAGAATGTAGTAGTTGTA---GAGTATGAGGAAGCATCTATATCTGCTCCATCCTTTTGTAGAAAATGCACCTGAGCAGTAAGATGCCACTTGTGCCTTACACATAAAG--------AGAGAAGTATGGGAAATCCCT-ACATTCTTTAAAGTAACTGGAGATTTGGTGGCTAATCA
s HiC_scaffold_1 108301657 649 - 233722169 gtttctttctctctcagatCCAATTTTCTATTCAGAAACACCAAGAGTAA-----TGGAGCTCTGTCCATTGG-AAGTGATGAG-CAAATGCACCTGGGTCAAAGCCCAACA----------------TCA----GTTCCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTC-CTTTGCAACTGGCTTT---------CAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttc-------------agttttctgagaaag------GATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTA

a score=14441
s chr3            98683908 512 + 160039680 AGTTGTTCCAAAGTAGGGGCTTCCCTCCCAACCTGTCTTAT------GGTTTTCATTTTCCAACCTGCTCCATATCCTCCTATGGTACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCA-CTTTGGCTCTGTCTGCAACTCTTTGG--ATGCAAATCAGGTGCTTAGGAAGCTTTCTGCATGGG-ATGGAAGTTTCCAGACACAGTTGTCAGTTATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACACT-GGAGAGGAGGACTTTCTACAGAAG-----GAAGCATAAATGCTCAAAAAT--CAGAATGTAGTAGTTGTAGAGTATGAGGAAGCATCTATATCTGCTCCATCCTTTTGTAGAAAATGCACCTGAGCAGTAAGATGCCACTTGTGCCTTACACATAAAGA
s HiC_scaffold_1 108444647 513 - 233722169 AGGTGTTCCACAG----GGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGT----------TGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGATA-AGTCGAAAG-TGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaaga

a score=15062
s chr3            98683928 464 + 160039680 TTCCCTCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATC-CTCCTATGGTACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCA-CTTTGGCTCTGTCTGCAACTCTTTGGATGCAAA--TCAGGTGCTTAGGAAGCTTTCTGCATGGGATGGAAGTTTCCAGACACAGTTGTCAGT---TATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACACTGGAGAG-GAGGACTTTCTACAG-----AAGGAAGCATAAATGCTCAAAAAT--CAGAATGTAGTAGTTGTAGAGTATGAGGAAGCATCTATATCTGCTCCATCCTTTTGTAGAAAATGCACCTGAGCAGTAA
s HiC_scaffold_1 108405626 475 - 233722169 ttcccttctcatcCCTCTTGCCATTTT---TTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGTTGCAAC-CGATTCTTTTGCAGAACATGAATCTGAGTGGTAA

a score=12210
s chr3            98683929 459 + 160039680 TCCCTCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATCCTCCT-ATGGTACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCACTTTG-GCTCTGTCTGCAACTCTTTGG-ATGCAAATCAGGTGCTTAGGAAGCTTTCTGCATGGGAT-GGAAGTTTCCAGACACAGTTGTCAGTTATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACACTGGAGAG----GAGGACTTTCTACAGAAGGAAGCATAAATGCTCAAAA---------ATCAGA--ATGTAGTAGTTGTAGAGTATGAGGAAGCATCTATATCTGCTCCATCCTTTTGTAGAAAATGCACCTGAGCA
s HiC_scaffold_1 108365743 466 - 233722169 tttcttctcatgtGTTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTG-AGCAGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGA---TGTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTAT-----ATCTCATTGCAGAGTAGGAATCTGAATA

a score=16200
s chr3            98683929 491 + 160039680 TCCCTCCCAACCTGTCTTATGGTTTTCATTTTCCAACCTGCTCCATATC-CTCCTATGGTACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCA-CTTTGGCTCTGTCTGCAACTCTTTGG--ATGCAAATCAGGTGCTTAGGAAGCTTTCTGCATGGGATGGAAGTTTC-CAGACACAGTTGTCAGTTATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACA-CTGGAGAGGAGGACTTTCTACAGAAGGAA-----GCATAAATGCTCAAAAA--TCAGAATGTAGTAGTT----GTAGAGTATGAGGAAGCATCTATATCTGCTCCATCCTTTTGTAGAAAATGCACCTGAGCAGTAAGATGCCACTTGTGCCTTACACATAAAGA
s HiC_scaffold_1 108531394 500 - 233722169 TCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA-AGTCGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTG----ACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATGAAC-CAAAGA

a score=12244
s chr3            98683951 442 + 160039680 TTTTCATTTTCCAACCTGCTCCATATCCTCCTATGG-TACTGTGCCTTTCAGATCAACATCTAGGATGGTCTGTCTGGGCAGGACACCTGAGATATCAATGACAGCAGCAGTGTGAATGACAGCAGAAATGCTCTGGCAGGCTCTCCTCAGGCATTGGGCATCCAAAATGTCTCCTGTCAGTACTGTCA-CTTTGGCTCTGTCTGCAACTCTTTGG--ATGCAAATCAGGTGCTTAGGAAGCTTTCTGCATGGGATGGAAGTTTCCAGACACAGTTGTCAGT---TATGCCTATCTTCAAGGGTAGTCATGGTGAGAAGACA-CTGGAGAGGAGGACTTTCTACAGAAGG-----AAGCATAAATGCTCAAAAATCAGA-ATGTAGTA---GTTGTAGAGTATGAGGAAGCATCTATATCTGCTCCA--TCCTTTTGTAGAAAATGCACCTGAGCAGTAAG
s HiC_scaffold_1 108389276 459 - 233722169 TTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAG

a score=9600
s chr3            98687716 572 + 160039680 AAAATTAAATATGAAACA---GATTAGCAATGTCAAA-GAGGGTGAGACCCACTGCTAAGGTCTCTAGTTCAATAATCTTTTGTTAGTATTACAAAATATTGCAAAATATTGTAAATATTGGCAAGTCCATTCTATTTAGGACATAAAAGAACTTCCAGCAAAGGAGAAAACTGATCTGCAGTGTCTAAATAGGA--GAGAGACATTTAGGCCCAGGGCCTGC-----CCTTGACCAGTTGCTGGTGAGGCCTGAATTCA--CTTTATCCAACTATACAGTGACTTGTTTGCTGTGCCACCTTTGAAAGTTATT---------TACAGATACACTGTATTTTTGTGCTGTAGA-------------CAAGAG-AGCCCTCTTTACAT-CTCA----TTCACAG----------CCCCCAGCCCC-TAGATAACTTATTGGATAATTCATTTTCCTATTTTCAATCGAAGGTTCTGAACAGCACTCTGATCTTCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACTCAAGCATATATAACCCAGGAAGCAG-ATAGTTTAGGGTGCAGAGGTGCTG
s HiC_scaffold_1 108534582 588 - 233722169 aaaactaaagacaAGAAAAGGGCCCAGGGAAATCAAATGAGGCAAAGTTCCACTACTGCAACCTCCAGCTTAGTAGTACTTTGCCTGTTTTGCATAGTAAT---------------------------CACTGAACTGAGCACATTAATTAGCTACAAG-AGAGGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGAGAAGTTTA---CCAG--CCTGTGTCCACCTTGTCTAGT-ACTGAGCAGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGA---TTACTCCTGGTGAGTGTGGACACACAGAGCCTTAGGGCTCcaagttctttttcatttcaggAGCATCCCTCTCTACTCACTCAGGCTTTCACAGTGGAGGCCCACACTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGTG

a score=7363
s chr3            98688045 412 + 160039680 GACAAGAGAGCCCTCTTTACATCTCATT-----------------CACAGCCCCCAGCCCCTAGATAACTTATTGGATAATT---------CATTTTCCTATTTTCAATCGAAGGTTCTGAACAGCACTC-TGATCTTCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACTCAAGCATATATAACC-CAGGAAGCAGATAGTTTAGGGTGCAGAGGTGCTG--CAAGTGGATCTGT------------GGAGTGATTCAATGTGCACAGAATAAAGGAATTCCTACTACACTTACCTAGTAGAAAAACCTGTCCTGATGCTAATTTCACACATTTCTCTCACAAAACATCACATCTCTGATCCCA-AATATTGTGGAATGTTCTCTAAGAAGGAAGGAAAAACAT
s HiC_scaffold_1 108302862 442 - 233722169 GAAAAGAAACCCCACTCTACATCTACTTAGGCTTTATGATGGGTCCACTCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTT-----GAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAA--GGCACAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGT--GATGACACAG-AGAAAAAACTACTCAAACTCAGTTTCTTTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGCAGATATTTTCCCCACCAGATGTGAAAAATCAT

a score=6891
s chr3            98688083 258 + 160039680 AGCCCCTAGATAACTTATTGGATAATTCATTTTCCTATTTTCAATC-GAAGGTTCTGAACAGCACTCTGATCTTCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACTCAAGCATATATAACCCAGGAAGCAG---ATAGTTTAGGGTGCAGAGGTGCTG-CAAGTGGATCTGTGG----------------AGTGATTCAATGTGCACAGAATAAAGGAATTCCTACTA
s HiC_scaffold_1 108393329 276 - 233722169 AGTTTCCAGTTCACTTCCTAGAGAATTC-TTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAG--TGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAGGACACACAAACTTCTTCTA

a score=7482
s chr3            98688083 230 + 160039680 AGCCCCTAGATAACTTATTGGATAATTCATTTTCCTATTTTCAATCGAAGGTTCTGAACAGCACTCTGATCTTCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACTCAAGCATATATAACCCAGGAAGCAG-ATAGTTTAGGGTGCAGAGGTGCTGCAAGTGGATCTGTGGAGTGATTCAA
s HiC_scaffold_1 108449262 230 - 233722169 AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGA-CTCTGGAGTGGGTTAA

a score=7302
s chr3            98688095 218 + 160039680 ACTTATTGGATAATTCATTTTCCTATTTTCAATCGAAGGTTCTGAACAGCACTCTGATCTTCTGTAGCTCTTCCTCCTACACCAATGTTCAGACAATCCTCTGGCCCAGAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCACTCAAGCATATATAACCCAGGAAGCAGA-TAGTTTAGGGTGCAGAGGTGCTG-CAAGTGGATCTGTGGAGTGATTCAA
s HiC_scaffold_1 108410536 219 - 233722169 ACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGATCAGATGTGATGATAGGTGACTCTGGAGAg-gattaaa

a score=41409
s chr3            98710976 1670 + 160039680 AGTCATCTAGTGCACACCCGAAGGACAATACATTGGAATTAGTCTCACATCTGCATCTGTTTCTGATTTTCCC-----TCAGTTCACCACAGATCCACGATCCCCTTTTGCCACCAGCATAAAAT--TGTCTGGCCATAGAAGGGACATATAATTGTTTATTTACAGAAAATCACAAT--CCACAGATGAGGTATTGACAAATAATTGTTTCTTCCATTGGGCTTCATAAAGCAAGCAGAATTTTCTGAAGGCTATACATGTTTTGAATGCGGAGAGAAATTAATGGAA--------AGAGCTCTGAGGTATGAGAGGTGCTGAGGGGCTTGGACC----------------CAGAAGCTGGGGCACAGATGCCCGTGTGTCTT---TGGAGAGGAATTTCAGAAAAAAGGCTTGTGGCTGGGTCAGTGACTGGCAAGGCTT-TGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTCTTGTGTGTCTCTACTTGCTGAAGGACTTGATTACACCC------------AGGGCCATGTCTCACCCTCTTCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAG-------TGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAATGTGCTACCTGACAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGGAGGAAGCTCACAGTTTCCAGCAGGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAAGGCAGAA--GCCCCACTCCTTGCTCAAGGTGTAACTTATATCATCAAAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTGCCCACATATACTGGGTTGGCTGTGTTGAATTTGCCAAAACTTCTCAGAATACCCTTATGTTTAAGGGCCATAATTATTATGTTAGAAATGAGTGGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTACTTTCATGACACTCTTCCTCATGGCCATTCAAGACAATCTCCTTGTAAGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCATAGACAACACACTGTCAGTGTCAGGAGATAA-------ATCTGAAGTTCATGTGCACATCTTCGTGCTTATCTTCATCCCCTAGCCCAACAACCTCTTCACTGTTAAGTTGCATCTTCTTTAACTCAACTCACAGATACCATGATATAGCCAGGGGAC----TACAAATGGAATCCAGA--------------------GAGCAAGCTTATCTTGGCTTTTGTGTTCACAGCACTGTGAGTGTAATCTTGCTTGTGTG--TGTGACTGGGTGTTTTTCAATTATTAACTTCAAAAGGCACCTAAAGTGTCAAATTTATTCATTCTTAATATGTCTATGATATAAGTAT-ATTTTTA
s HiC_scaffold_1 108297845 1661 - 233722169 AGTCATCTAGTACATGTCTAAAACCTAGCAGGTCTTAGTCATTCTTAGATCC-CATC-----CTGACTTTACCACCACTCTGCCCATCCCAGTTACATGATCCTTCTGAACTAC----AGAAGGCCATGTTtggaaatggaaggaaaatgtA---TATTATTAACA-AAACTCATACTTTCTTTATATTAGTCCTAaagcatttattgtttttccta---AGCTTTATGCAAAATG-AgagtttttcaaagaaaagaaacaatttaacaaTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAAACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCTTGTTTTTCCTCATTGGATGATCAGGCCAGAAAA----CTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTG----------------------GCCACTGCTTGAAAAGCAGTGAGCAGAGCCGGT-------GTATCTAC-----------CTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCCTCTGAGTCCCCTTGTGCTGATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTACA-TTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAACAGAGTCATTTCAGGTTCATTTTCACTTCCT----------------CCCCAGCGGAAGTTGCTGTTTAATATTTGGGTATAACTTTTTCTCTCTGACTCAGATGTATTATGGTATAGTTTTaggaaaaggcaaaaatgaaaaaaagaagggatATTTTCATTGTGTTGAACAAATAT-TCTTGGTTTTTGGATTTGTGgaat-----gtgtatatgtgtttacGTGCTTGTGATTTTATGTTCATTGATT------TTGATAAAGCATATAAAGTTATTAGTTCGTATTTTTCCATAATGGATATGAAATAATCATCATTTCTA

a score=40396
s chr3            98711369 1117 + 160039680 ACTGGCAAGGCTTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGT---CTTGTGTGTCTCTACTTGCTGAAGGA-----------------------------CTTGATTACACCCAGGGCCATGTCTCACCCTCTTC-------CATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAATGTGCTACCTGACAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGGAGGAAGCTCACAGTTTCCAGCAGGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAAGGCAGAAGCCCCACTCCTTGCTCAAGGTGTAACTTATATCATCAAAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTGCCCACATATACTGGGTTGGCTGTGTTGAATTTGCCAAAACTTCTCAGAATACCCTTATGTTTAAGGGCCATAATTATTATGTTAGAAATGAGTGGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTACTTTCATGAC-ACTCTTCCTCATGGCCATTCAAGACAATCTCCTTGTAAGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCATAGACAACACACTGTCAGTGTCA---GGAGA------TAAATCTGAAGTTCATGTGCACATCTTCGTGCTTATCTTCATCCCCTAGCCCAACAACCTCTTCACTGTTAAGTTGCATCTTCTTTAACTCAACTCACAGATACCATGATATAGCCAGGGGACTACAAATGGAA
s HiC_scaffold_1 108360820 1135 - 233722169 ACCAGCAGGCATCTGGTGGCCTTTGAAAGACAGTAAGTTG-CCATTGTGTCAGAGGGAGAGTGTATGACTTGTACTCCTGCCTTTGTCAAGTT-CtgcaggaagtcagaaggaggaaGTAGGTAAATAGCTCCAGGCATCACCCAGAACCA-----CATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCATGGA-AGCACATGGCCTGTATAATGTAGAGACTCCATCATATCCAAGATTCATG--------TTCATGCCTTTTTTCTTCCCAAAG-GAAGTTATTATTTGAGtg-tgatttgtctttttcctgact-------gAGATACTATGCTATAGTtggagga----aaatagaa

a score=46803
s chr3            98711380  986 + 160039680 TTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTCTTGTGTGTCTCTA------------------CTTGCTGAAGGACTTGATTA---CACCCAGGGCCAT-----GTCTCACCCTC-------TTCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAATGTGCTACCTGACAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGGAGGAAGCTCACAGTTTCCAGCAGGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAAGGCAGAAGCCCCACTCCTTGCTCAAGGTGTAACTTATATCATCAAAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTGCCCACATATACTGGGTTGGCTGTGTTGAATTTGCCAAAACTTCTCAGAATACCCTTATGTTTAAGGGCCATAATTATTATGTTAGAAATGAGTGGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTACTTTCATGACACTCTTCCTCATGGCCATTCAAGACAATCTCCTTGTAAGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCATAGACAACACACTGTCAGTGTCAGGAGATAAATCTGAAGTTC
s HiC_scaffold_1 108401962 1017 - 233722169 TTTTGTAGCCTTATGAAGACAATAAGTTG-CCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCT-TGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTC

a score=43891
s chr3            98711503 927 + 160039680 CATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAATGTGCTACCTGACAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGGAGGAAGCTCACAGTTTCCAGCAGGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAAGGCAGAAGCCCCACTCCTTGCTCAAGGTGTAACTTATATCATCAAAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTGCCCACATATACTGGGTTGGCTGTGTTGAATTTGCCAAAACTTCTCAGAATACCCTTA-TGTTTAAGGGCCATAATTATTATGTTAGAAATGAGTGGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGATCAG-ACCATGTACTTTCATGACACTCTTCCTCATGGCCATTCAAGACAATCTCCTTGTAAGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCATAGACAACACACTGTCAGTGTCAGGAGATAAATCTGAAGT---TCATGTGC-----ACATCTTCGTG--CTTATCTTCATCCCCTAGCCCAACAACCTCTTCACTGTTAAGTTGCA
s HiC_scaffold_1 108440469 938 - 233722169 CATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGGG-AACACAGGATCAGCATCAATAAATAACCCAGAGGTCTCCCATGGGTCAGAAACATGTTTGTATTCTCAACTTC--CCTCTGAAGTGACTTTTGCTCCTCTGTCAAACTACA

a score=46931
s chr3            98711503 1252 + 160039680 CATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAATGTGCTACCTGACAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGGAGGAAGCTCACAGTTTCCAGCAGGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAAGGCAGAAGCCCCACTCCTTGCTCAAGGTGTAACTTATATCATCAAAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTGCCCACATATACTGGGTTGGCTGTGTTGAATTTGCCAAAACTTCTCAGAATACCCTTATGTTTAAGGGCCATAATTATTATGTTAGAAATGAGTGGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTACTTTCATGACACTCTTCCTCATGGCCATTCAAGACAATCTCCTTGTAAGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCATAGACAACACACTGTCAGTGTCAGGAGATAAATCTGAAGTTCATGTGCACATCTTCGTG-------CTTATCTTCATCCCCTAGCCCAACAACCTCTTCACTGTTAAGTTGCATCTTCTTTAACTCAACTCACAGATACCATGATATAGCCAGGG--GACTACAAATGGAA------------------TCCAGAGAGCAAGCTTATCTTGGCTTTTGTGTTCACAGCACTGTGAGTGTAATCTTGCTTGTGTGTGTGACTGGGTGTTTTTCAATTATTAACTTCAAAAGGCACCTAAAGTGTCAAATTTATTCATTCTTAATATGTCTATGATATAAGTATATTTTTACACATATAGATTCATGCCTGATTTTTAAAATTACAAAACCAGAAGATTATTTCTTAAAT---TATGAATAGGAACTTTTTAAAATTAAGGATCATTGAAA------ATTAACATTGTT
s HiC_scaffold_1 108528493 1238 - 233722169 CATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGG-AACACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTC----------CCCCATGGATAAGAATCATGTTCATATCC----------AGTTCCTCCCCATGAGGTGA--------TTAATACAGATC-----TACCAGGTTGCAgtcagagcaaaataaaaatagaaatggactAACATTTGTGTTGTGATAAGAAATAATATGTGAGTTTTTGTgttc---tatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttt---------tttgaAAAGGGA--TAGGTAGGCTAGTATATATTTCACTAGTACAGATATATAATTACCATGTGTTttgagatatagcttagtgttaGA--CATAGCATGCTCTAACCCTAGGGTTATATCCccagtataaataaaaagaaaaatatgaataacaaaaataataaaaaagcctCATTACCATTTTT

a score=10082
s chr3            98713088 611 + 160039680 TTATGAGGCCCTAAAGCTGTAGAAGAACTAGCAGGATGAAA-AGCAGGCACCTGCAAGGTTTAGATCTGGCTCATAAGAGGTAATGGGTCTGGGGTTGTTAATTGCTTGTAGTTGGAGTCCAGTC-TCTCTGGAATTGAGGACAGACCTCATATCCT--GGGTTACTTACTTTCTATCTGGCAGGCCTCGGCTATGGAATAGCACTGAGCTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGCTTGTGTGTGTGGACATTAACTGCCCTACTTTCACCT--TGTC-----CTCTCCAAATACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGTCAAACACAAGGCAGGTCATTGAGAAG-TTTCTTTGTGAGTTG-----------TATACAGATACTAGTTACCTAGATTATGAAGAACTGTCATAGTTGGAAAAATATTGAAGAGG
s HiC_scaffold_1 108365484 605 - 233722169 TCAGGAGGCTCTAGA----TGAGAGATCTAAGAACATGACTTAGGTGTCATCTGTAAGGT---GGTCTGCCCCATGGGTGGAGGTGGAT----GGATATCAAGGTTTTCAATTTGGAGTCTAGTCAGCCTTGGAAT---GCAAAGTTTTCCTGACCTTTGAAGTACACATGTATAGTATTGTGACCCTC--CTACAGACTACCTCTGAGGCCT--TGGCCAAGTTCTTTGCCCGAAAAGTTCTGGCTTAT-GCATTTAAATTACGtggtgaatttttatttctt-ctcatgtGTT----CTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGC-AGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGA----TGTAGAGG

a score=10273
s chr3            98713281 344 + 160039680 AATAGCACTGAGCTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGCTTGTGTGTGTGGAC-----ATTAACTGCCCTAC---TTTCACCTTGTCCTCTCCAAATACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGTCA-AACACAAGGCAGGTCATTGAGAAGTTT
s HiC_scaffold_1 108374344 343 - 233722169 AACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGACCAGAACCCAGAAGCAGT--------GGAGCTTCTCCTCTTTTTGCTACTTCACCTACCATCATTTTCCCTACCTGTTGCATCTCAT--GCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT

a score=12254
s chr3            98713283 446 + 160039680 TAGCACTGAGCTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGCTTGTGTGTGTGGACATTAACTGCCCTACT-TTCACCTTGTCCTCTCCAAATACAT-------TACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGTC-AAACACAAGGCAGGTCATTGAGAAGTTTCTTTGTGAGTTGTATACAGATACTAGT----------TACCTAGATTATGAAGAACTGTCATAGTTGGAAAAATATTGAAGAGGAAACCTGACATATGGAAAGAGAGTAAAATA
s HiC_scaffold_1 108444588 448 - 233722169 TATCTCTGAGTGCAGTTCGATGAAAGTCATGAGCAAAGGCTTTTGGATCAGAACTCTGCAGGTGTTCCACAGGGGTTCTTCTCTGTCCTTT-----------CTCATCTCCATGCTATTCCCCTT---CCCATCAGCTGCATGTTGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGATAAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAG-CAGAGAGATATTCAGAAGTGAGTCCACTCTATGg--aggaaacaaaata

a score=7486
s chr3            98713290 559 + 160039680 GAGCTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGC------------TTGTGTGTGTGGACATTAACTGCCCTACTTT-CACCTTGTCCTCTCCAAATACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGTCAA-ACACAAGGCAGGTCATTGAG-AAGTTTC---TTTGTGAGTTGTATACAGATAC--TAGTTACCTAG---------------------ATTATGAAG-----AACTGTCATAGTTGGAAAAATATTGAAGAGGAAACCTGACA------------TA-TGGAAAGAGAGTAAAATATTC-CCCCACCCCACCCTG---CAGAAAACAAATCAGATAAAGAAGCAGTCA--------------------AATGTTAAGGAGAGTAGGTGGGAAGTTGACTCATTCATCAAAGGGACTTAGGAAGTAATGGAGAGCTGTCTA
s HiC_scaffold_1 108301709 601 - 233722169 GAGCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGGTCAAAGCCCAACATCAGTTCCATGGTGgggcttctctttccctctccatcTGTTGTGT--------------TGTCTTCCTTTGCAACTGG--CTTTCAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttcagttttctgag-----aaagGATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTACATA

a score=10330
s chr3            98713419 301 + 160039680 TACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGT-CAAACACAAGGCAGGTCATTGAGAAGTTTCTT--------TGTGAGTTGTA----TACAGATACTA--GTTACCTAGATTATGAAGAACTGTCATAGTTGGAAAAATATTGAAGAGGAAACCTGACATATGGAAAGAG
s HiC_scaffold_1 108389313 313 - 233722169 TACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCA-AATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAG

a score=10765
s chr3            98713419 268 + 160039680 TACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGT-CAAACACAAGGCAGGTCATTGAGAAGTTTCTTTG------TGAGTTGTATACAGATACTAGT------TACCTAGATTATGAAGAACTGTCATAGTTGGAAAA
s HiC_scaffold_1 108531452 279 - 233722169 TGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA--AGTCGACAGtacatagacttttaaaaatattcatagcaaggaga

a score=11202
s chr3            98713419 278 + 160039680 TACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCTCTAGGTCTGT-CAAACACAAGGCAGGTCATTGAGAAG-TTTCTTTGTGAGTTGTATAC----------AGATACTAGT---TACCTAGATTATGAAGAACTGTCATAGTTGGAAAAATATTGAAGA
s HiC_scaffold_1 108405683 292 - 233722169 TGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGG-GAGATATGGAGGA

a score=12008
s chr3            98716018 622 + 160039680 TATTTTTTACTTTTTTATTTTACTTCTATCTAACATGCTAAGTCAAAGACCCTCTCCCTCAGAAAAACAAACAAGCGCAAAACAAGCAACTAGATCAGTAGAAATTAGAAGAGAGAGACAGAGCTAGTGATG-AGCCCCCAGCTTAATGGTTATTATGGCTATT--ACATAGCAACTTTCTAGTC---CACATAAAAGAGCTACAG------------------------------AAAAGAGAGAGAGAACTT-------CTCAGTCCAAACTCTGTCT-------------------------CTCCCAA----------------ACTGTGTTTTTCTATGTGTAGTGTACCTTTTGATGAATGTGGACAAGGAGAAATGTTATGAATGCAAGTGTCTTTTATTTACTGTAGAAGGGAGGAGCCCTCCCA---TGTGCAGGCT------GTGTTGGCTACACAGTCATTTGGCAAATGTTTACTTACTGAAGAATTCCTTCCTTGTTTCTGGTCTGAAGACCTTGTCCAGGACCCTGATCTCCTCCAGATCTTCCTCTTGCACCAACAACTGGATGATCCTCTGCCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGTAAGCAGATCACAGTGGGAGTGAGGTTAACTTAATGTACGTGACACTGGAGATGGCTAGAAAGAGAGAT
s HiC_scaffold_1 108534524 680 - 233722169 tactttagatttttttcttttccctc-acaaAAGATCCTAAGTGAG--------TCccttaaaaagcaaaacta----aagacaAGAAAAGGGCCCAG-GGAAATCAAATGAGGCAAA--GTTCCACTACTGCAACCTCCAGCTTAGTAGT-ACTTTGCCTGTTTTGCATAGTAATCACTGAACTGAGCACATTAATTAGCTACAAGAGAGGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGAGAAGTTTACCAGCCTGTGTCCA--CCTTGTCTAGTACTGAGCAGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGAT-TAC-TCCTGGTGAGTGTGGACACACAGAGCC-TTAGGGCTCcaagttctttttcatttc-------aggAGCATCCCTCTCTACTCACTCAGGCTTTCACAGTGGAGGCC-CACACTCAGTC--CCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGTGACTGGGC---ACCCTGGAGAGAGCTAAAGAGAGAAGT

a score=11775
s chr3            98716239 398 + 160039680 AGTCCA-AACTCTGTCTCTC---------CCAAACTGTGTTTTTCTATGTGTAGT--GTACCTTTTGATGAATGTGGACA-AGGAGAAATGTTATGAATGCAAGTGTCTTTTATTTACTGTAGAAGGGAGGAGCCCTCCCATGTGCAGGCTGTGTTGGCTACACAGTCATTTGGCAAATG----------TTTACTTACTGAAGAATTCCTTCCTTGTTTCTGGTCTGAAGACCTTGTCCAGGACCCTGATCTCCTCCAGATCTTCCTCTTGCACCAACAACTGGATGATCCTCTGCCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGTAAGCAGATCACAGTGGGAGTGAGGTTAACTTAATG-TACGTGACACTGGAGATGGCTAGAAAGAGA
s HiC_scaffold_1 108449098 401 - 233722169 AGTCCAGAAACCAGTCTCTCAACAGCTGTTCAAGGTCTCTTATTCTGTACATCCTCAGTTCTTTCTGATGAGTGTGGACATGGGAGATCCCTCATGGCTCCATAGTTcctgtatttgttttaaaaagca--ctcCCTCCCACAC-----TTGCTTAGACTGCA----------GAAAATGAAGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGT----GTGATGATAGATGACTCTGGAGTGGGTTAAAGAAAAA

a score=9652
s chr3            98716254 442 + 160039680 TCTCCCAAACTGTGTTTTTCTATGTGTAGTGTACCTTTTGATGAATGTGGACAAGGAGAAATGTTATGAATGCAAGTGTCTTTTATTTACTGTAGAAGGGAGGAGCCCTCC-CATGTGC--AGGCTGTGT--TGGCTACACAGTCATTTGGCAAAT-----GTTTACTTACTGAAGAATT----CCTTCCTTGTTTCTGGTCTGAAGACCTTGTCCAGGAC-CCTGATCTCCTCCAGATCTTCCTCTTGCACCAACAACTGGATGATCCTCTGCCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTC-AACACAGTAAGCAGATCACAGTGGGAGTGAGGT----TAACTTAATGTACGTGACACTGGAGATGGCTAGAAAGAGAGAT---GAT-----------------------GTGAT---------------TTCCCCAAACCCAGTTTCTC--CTTCAAACCTCCCATAGCACAGATCATA
s HiC_scaffold_1 108302783 469 - 233722169 TCTTTTATACTGTGTCCT-CTATGAGT------TCTCTTGCTGAATGTGGACATGGGAAGAGTCTTTGGCTCCAAGTTTCCTTC-------GTGAAAAGAAACCCCACTCTACATCTACTTAGGCTTTATGATGGGTCCAC-----TCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAAGGCACA---AGGATCAGGTGTGGTAACTGA------GTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGTGATGACACAGAGAAAAAACTACTCAAACTCAGTTTCTTTACTTTA-----CTCATAGCACAAATCACA

a score=12384
s chr3            98716284 351 + 160039680 GTACCTTTTGATGAATGTGGACAAGGAGAA-ATGTTATGAATGCAAGTGTCTTTTATTTACTGTAGAAGGGAGGAGCCCTCCCA----TGTGCAGGCTGTGT--TGGCTACACAGTCATTTGGCAAAT-----GTTTACTTACTGAAGAATTCCTTCCTTGTTTCTGGTCTGAAGACCTTGTCCAGGACCCTGATCTCCTCCAGATCTTCCTCTTGCACCAACAACTGGATGATCCTCTGCCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGTAAGCAGATCACAGTGGGAGTGAGGTTAACTTAATG-TACGTGACACTGGAGATGGCTAGAAAGA
s HiC_scaffold_1 108410408 351 - 233722169 GTTCTTTCTGATGAGTGTGGACATGGAATATCCATTATGATCCCA--CATTtcctgtttgttttaaaaaacatc--cTCTCCCACAGTTGGTTAGGCTGTAGAATGGATCCCTAAT-----GTGAAATTTCCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGATCAG----ATGTGATGATAGGTGACTCTGGAGAggattaaagaaa

a score=11955
s chr3            98716288 351 + 160039680 CTTTTGATGAATGTGGACAA-GGAGAAATGTTATGAATGCAAGTGTCTTTTATTTACTGTAGAAGGGAGGAGCCCTCCCATGTGC--AGGCTGTGT--TGGCTAC--ACAGTCATTTGGCAAATGTTTACTTACTGAAGAATTCCTTCCTTGTTTCTGGTCTGAAGACCTTGTCCAGGACCCTGATCTCCTCCAGATCTTCCTCTTGCACCAACAACTGGATGATCCTCTGCCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACAGTAAGCAGATCACAGTGGGAGTGAGGTTAACTTAATG-TACGTGACACTGGAGATGGCTAGAAAGAGAGA
s HiC_scaffold_1 108393217 351 - 233722169 CTTCTGATGAGTGTGGACATTGGAGATCCCTCATGGCTCCAAATTTCCTGTATTTGTT-TAAAAAGCACTCCCTCACACACTTGCTTAGGCTGTAGAATGGATCCTAACATGAAGTTTCCA---GTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAG----ATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaa

a score=40350
s chr3            98741343 1661 + 160039680 AGTCATCTAGTGCACACTGGAAGGACAATACGTTGGAACTCATCTCACATCTACATCTGTTTCTGATTT-----CCCCCCAGTGCACCTCAGATCCATGGTCCCCCTTTTGATTTTAGCATAAAATCAT--CTGGCCATGAAAGGGACACATAACTGTTTATTTACAGAAAAACACAAACCAAATATGAGGTATTGACAAA-TATTTATTGTTTCTTCCATTGAGCTTCATAAAGCTAGCAGAATTTTCGGAAGGCTATACATGCTTTGAATGGGGAGAGAAAGTAATGGA--------GAGAGCTCTGAGGTACAAGTGGTGCTGAGGGGCTTGGGCC----------------CAGGAGCTGGGGCACAGGTGGCTGTGTGTCTT--TTGGGAGGTACTTCAGAAAGAAGGCTTGTGGCTGGGTCAGTGACTGGCAAGGCTT-TGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAACAGCACCTGTGT-TGTGCTTTTATC-CTTACTGTCCTTACTGGA----------CTGGTAATACCCAGGGCCATGTCTCCATCATCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTACTAGCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTACAGTATGGGCACAGGAAGGTACCACCTGGAATTGAGGCAGAA--GCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAACTTTGGTGAGGGGTATCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTTTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCCACATTGCCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCCCACCTCTCAGAATAAACTTATTTTTGAGGGCCTTAATTATTGTGTTAGAAAGGAATTGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGACCATGTGCTTTCACGATGCTCGTCCTCGTGGCCATTCAGGACAATGTCCTTGTAAGAGTTGGGCCCTGCAACGTCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCTGAGGTTCACCATGTGCAGAGCATT--GTGCTCATTTTCA----TGCCCTAGCCCAACAACCTCTTCACTCTTAAGGTGCATCTGCTTTAACTGCACTCATGGCTACCATGATATTGCCAGTGGAC----TACAAATGGAATCCAGA--------------------GAGCAAGTATGTCTTGGCTTTTGTGTTCCCAGCACTGTGAGTGTGTACTTGCTTGTGTTTGAGACTGGGTGTTTTTCATTTTTTAACTTTAA-AAGTCACTTAAAGTGTCTCAGTACTT-CATTCCTAACATGTCTATGAGATAA
s HiC_scaffold_1 108297845 1649 - 233722169 AGTCATCTAGTACATGTCTAAAACCTAGCAGGTCTTAG------TCATTCTTAGATCCCATCCTGACTTTACCACCACTCTGCCCATCCCAGTTACATGATCC---TTCTGAACT--ACAGAAGGCCATGTTtggaaatggaaggaaaa------tgtATATTATTAACAAAACTCATACTTTCTTTATATTAGTCCTAaagcatttattgtttttccta---AGCTTTATGCAAAATG-AgagtttttcaaagaaaagaaacaatttaacaaTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAAACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCTTGTTTTTCCTCATTGGATGAT---CAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTG----------------------GCCACTGCTTGAAAAGCAGTGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCC--TCTGAGTCCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGT---------CCCCCAAGGCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTACA-TTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAACAGAGT------CATTTCAGGTTCATTTTCACTTCCTCCCCAGCGGAAGTTGCTGTTTAATATTTGGGTATAACTTTTTCTCTCTGACTCAGATGTATTATGGTATAGTTTTaggaaaaggcaaaaatgaaaaaaagaagggatATTTTCATTGTGTTGAACAAATAT-TCTTGGTTTTTGGATTTGTGg-aatgtgtatatgtgtttac--GTGCTTGTGA-------TTTTATGTTCATTGATTTTGATAAAGCATATAAAGT-TATTAGTTCGTATTTTTCCATAATGGATATGAAATAA

a score=39802
s chr3            98741740 1028 + 160039680 ACTGGCAAGGCTTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAACAGCACCTGTGTTGTGCTTTTATCCTTA-CTGTCCTTACTGGA------------------------------CTGGTAATACCCAGGGCCATGTCTCCATCATCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTACTAGCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTACAGTATGGGCACAGGAAGGTACCACCTGGAATTGAGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAACTTTGGTGAGGGGTATCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTTTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCCACATTGCCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCCCACCTCTCAGAATAAACTTATTTTTGAGGGCCTTAATTATTGTGTTAGAAAGGAATTGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGACCATGTGCTTTCACGAT-GCTCGTCCTCGTGGCCATTCAGGACAATGTCCTTGTAAGAGTTGGGCCCTGCAACGTCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTC-----AGTGTCTGAGGTTCACCATGTGCAGAGCATTGTGCTCATTTTCATGCCCT
s HiC_scaffold_1 108360820 1049 - 233722169 ACCAGCAGGCATCTGGTGGCCTTTGAAAGACAGTAAGTTG-CCATTGTGTCAGAGGGAG-----AGTGTATGACTTGTACTCCTGCCTTTGTCAAGTTCtgcaggaagtcagaaggaggaaGTAGGTAAATAGCTCCAGGCATCACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCATGGA-AGCACATGGCCTGTATAATGTAGAGACTCCATCATATCCAAG-------ATTCATGTTCATGCCTT

a score=46743
s chr3            98741751 972 + 160039680 TTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAACAGCACCTGTG-TTGTGCTTTTATC----CTTACTG---TCCTTACTGGA----CTGGTAA-------------TACCCAGGGCCATGTCTCCATCATCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTACTAGCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTACAGTATGGGCACAGGAAGGTACCACCTGGAATTGAGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAACTTTGGTGAGGGGTATCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTTTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCCACATTGCCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCCCACCTCTCAGAATAAACTTATTTTTGAGGGCCTTAATTATTGTGTTAGAAAGGAATTGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGACCATGTGCTTTCACGATGCTCGTCCTCGTGGCCATTCAGGACAATGTCCTTGTAAGAGTTGGGCCCTGCAACGTCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGT
s HiC_scaffold_1 108401962 996 - 233722169 TTTTGTAGCCTTATGAAGACAATAAGTTG-CCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCTTGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCAT

a score=44099
s chr3            98741763 934 + 160039680 ATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAACAGCACCTGTG-TTGTGCTTTTATCC--TTACTGTCCTTACTGGACTG---------------GTAATAC------CCAGGGCCATGTCTCCATCATCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTACTAGCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTACAGTATGGGCACAGGAAGGTACCACCTGGAATTGAGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAACTTTGGTGAGGGGTATCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTTTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCCACATTGCCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCCCACCTCTCAGAATAAACTTA-TTTTTGAGGGCCTTAATTATTGTGTTAGAAAGGAATTGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGGTCAG-ACCATGTGCTTTCACGATGCTCGTCCTCGTGGCCATTCAGGACAATGTCCTTGTAAGAGTTGGGCCCTGCAACGTCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCT
s HiC_scaffold_1 108440328 961 - 233722169 ATGGAGACAATAAGTTG-CCATTGTGTTACAGTGAGACTTTAGGATCTGTGCTTGTGCCTTTGACAAGTTATGGAGGAAGCCAGATTGAAGAAGAACATAGAAGCAACACGTGTCACAAGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCT

a score=47981
s chr3            98741847 1100 + 160039680 GGTAATACCCAGGGCCATGTCTCCATCATCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTACTAGCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATATATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTACAGTATGGGCACAGGAAGGTACCACCTGGAATTGAGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAACTTTGGTGAGGGGTATCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTCTTGGGGTTTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCCACATTGCCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCCCACCTCTCAGAATAAACTTATTTTTGAGGGCCTTAATTATTGTGTTAGAAAGGAATTGACTTCTCTCCCCATAAATGCACATGGGCCTTAATGCACAAGTTTGCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGGTCAGACCATGTGCTTTCACGATGCTCGTCCTCGTGGCCATTCAGGACAATGTCCTTGTAAGAGTTGGGCCCTGCAACGTCAACTGAGCTGGAGAAGATGAAGGCTGGCACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCTGA-------------GGTTCACCATGTGCAGAGCATTGTGCTCATTTTCATGCCCTAGCCCAACAACCTCTTCACTCTTAAGGTGCATCTGCTTTAACTGCACTCATGGCTACCATGATATTGCCAGTGGACTACAAATGGAATCCAGAGAGCAAGT-ATGTCTTGGCTTTTGTGTTCCCAGCACTGTGAGTGTGTACTTGCTTGTGTTTGAGACTGGGTGTTTTTCATTTTTTAA
s HiC_scaffold_1 108528459 1095 - 233722169 GGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGG-AACACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTCCCCCATGGATA-AGAATCATGTTCATATCCAGTTCCT--CCCCATGAGGT------GATTAATACAGATCTAC-CAGGTTGCAgtcagagc-aaaataaaaatagaaatggactAACATTTGTGTTGTGATAAGAAATAATATGTGAGTTTTTGTgttct---atctgtgtgtgtgtgtgtgtgtgtgtgtg----tgtgtgtgtgttgttttttga

a score=11537
s chr3            98743639 443 + 160039680 TTACTTACTTTCCACCTGCTGGG---CCTCAGCCATAGAA-----------TATCACTGAACTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCAGAGAATGGCAGGTATTCCATGCAAAAGCATCCCTTCCTGCTTGTATGGACATTTTTAACTGCCCTACTTTCACCTTGTCCTCTCCAAATATAT------------------TACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCCCTAGGTCTGTCAAACACAAGGACA-GTCATTGAGAAG-TTTCTTTGTGGGCTGTATAC----------AGATACTAGT---TACCTAGATTATCAAAAATTGTCATAGTGGGAAAA
s HiC_scaffold_1 108405491 475 - 233722169 TTCCTTGCTTTTCTTATCCCTGGTTTCCTCatctaaaaaacaagaaaatattatcTTTGAGTATAGTCAGATGAGAGTCCTGAACAAAGGCTGTTGGATAAGAACTCAGCAGGTGCTCTACAGGGggacttctctttcccttctcat---------------cCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGA

a score=12443
s chr3            98743668 442 + 160039680 CCATAGAATATCA---CTGAACTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCAGAGAATGGCAGGTATTCCATGCAAAAGCATCCCTTCCTGCTTGTATGGACATTTTTAACTGCCCTACT-TTCACCTTGTCCTCTCCAAATATAT-------TACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCCCTAGGTCTGTC-AAACACAAGGACAGTCATTGAGAAG-TTTCTTTGTGGGCTG-----TATACAGATACTAGT------TACCTAGATTATCAAAAATTGTCATAGTGGGAAAAATGTCGAAGAGGAAGCCTGAGATGTGGA
s HiC_scaffold_1 108444577 447 - 233722169 CCAGAAAATATTATCTCTGAGTGCAGTTCGATGAAAGTCATGAGCAAAGGCTTTTGGATCAGAACTCTGCAGGTGTTCCAC----AGGGGTTCTTCTCTGT---------CCTTTCTCATCTCCATGCTATTCCCCTT---CCCATCAGCTGCATGTTGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGATA--AGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGC-AGAGAGATATTCAGAAGTGAGTCCACTCTATGga

a score=9739
s chr3            98743669 360 + 160039680 CATAGAATATCA---CTGAACTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCAGAGAATGGCAGGTATTCCATGCAAAAGCATCCCTTCCTGCTTGTATGGACATTTTTAACTGCCCTAC---TTTCACCTTGTCCTCTCCAAATATATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCCCTAGGTCTGTCA-AACACAAGGACAGTCATTGAGAAGTTTCTTTGTGGG
s HiC_scaffold_1 108374336 357 - 233722169 CAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGACCAGAACCCAGAAG-----CAGTGGAGCTTCTCCTCTTTTTGCTACTTCACCTACCATCATTTTCCCTACCTGTTGCATCTCAT--GCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAA---CTTGGTGGG

a score=8072
s chr3            98743683 577 + 160039680 GAACTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCAGAGAATGGCAGGTATTCCATGCAAAAGCATCCCTTCCTGCTTGTATGGACATTTTTAACTGCCCTACTTT-CACCTTGTCCTCTCCAAATATATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGT------CCCTAGGTCTGTCAAACACAAGGACAGTCATTGAGAAGTTTCTTT--GTGGGCTGTATACAGATAC--TAGTTACCTAGATTATC--------AAAAATTGTCATAGTGGGA-----------------AAAATGTCGAAGA---GGAAGCCTGAGATGTG-----------GAAAGAGGGGCAAATA-----TTCTGTCCC-----GATTCAGAAAACATATCACATAAAGAAGCAGTCA--------------------AATGTTCAAGAGAGTAGGTGGGAAGTTGACTAATTCATCAAAGTGAATAAGGTGGTAATGGAGAGCTGGCTAGAAGTGGGATTAAGAATCAGA
s HiC_scaffold_1 108301709 618 - 233722169 GAGCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGGTCAAAGCCCAACATCAGTTCCATGGTGgggcttctctttccctctccat----cTGTTGTGTTGTCTTCCTTTGCAACTGG--CTTTCAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAG--------TTAACAAGTAGgtttcagttttctgagaaagGATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAG-TGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTACATACAA----GATGAAAAATCAGA

a score=9513
s chr3            98743759 323 + 160039680 TTCCTGCTTGTATGGACATTTTTAACTGCCCTACTTTCACCT--TGTC-----CTCTCCAAATATATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCCCTAGGTCTGTCAAACACAAGGACAGTCATTGAGAAG-TTTCTTTGTGGGCTG-----------TATACAGATACTAGTTACCTAGATTATCAAAAATTGTCATAGTGGGAAAA
s HiC_scaffold_1 108365743 338 - 233722169 tttcttctcatgtGT---TCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGC-AGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGA

a score=9645
s chr3            98743814 301 + 160039680 TATATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCCCTAGGTCTGT-CAAACACAAGGACAGTCATTGAGAAGTTTCTTTG-TGGGCT-------------GTATACAGATACTAGTTACCTAGATTATCAAAAATTGTCATAGTGGGAAAAATGTCGAAGAGGAAGCCTGAGATGTGGAAAGAG
s HiC_scaffold_1 108389313 313 - 233722169 TACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCA-AATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAG

a score=10903
s chr3            98743819 354 + 160039680 TACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGATGGCAGCAGTATGGATGACAACAGAGATGCCCTGGCAAGCTCTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGCTTGTCCCTAGGTCTGT-CAAACACAAGGACAGTCATTGAGAAG-TTTCTTTGTGGGCTG-----TATACAGATACTAGT------TACCTAGATTATCAAAAATTGTCATAGTGGGAAAAATGTCGAAGAGGAAG------CCTGAGATGTGGAAAGAGGGGCAAATATTCTGTCCCGATTCAGAAAACATATCACATA------------AAGAAGCAGTCAAATGTT
s HiC_scaffold_1 108531457 370 - 233722169 TACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA--AGTCGACAGtacatagacttttaaaaatattcatagcaag-gagatatccaggaatGAGAACATTCCACAGA-GTGAACAAGGTAATGAA-----------GGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgtt

a score=9443
s chr3            98753142 471 + 160039680 TCTCCCAAACTGTGTTTTGCTATGTGGGCTGTTTCCTTTTGATGAATGTGGACATGGAGAAGTGTTATGACTGAAAGTGTCTTTTGTTTGCTAGACATGGGAGGATCCCTCCCATATGCAAGCTGTGTTGGCTATGCAGTCATGTGGCTAAT-TGTCACAT-------TCACTTACTGAAGAATTG----CTCCCTGGTTTCAGGTTTGAAGACCTTGTCCAGGAC-CCTGATCTCCTCAAGATCTTTCTCCTGCACCAACAACTGGATGATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTC-AACACTGGAAGCAGATCACA---GTTGTGCGAGGTTAATGTATCATGGTCCTGGAGGTGGCTAGAAAGAGAGAT--------------------------CTGGTGAT---------------TTCCCCAAACCCAGTTTCTT--CTTCAAACCTCCCATAGAACAGATC-----------TCCAAGACATGGAGATTAATTCCCACATCA
s HiC_scaffold_1 108302783 506 - 233722169 TCTTTTATACTGTGTCCT-CTATGAG-------TTCTCTTGCTGAATGTGGACATGGGAAGAGTCTTTGGCTCCAAGTTTCCTTCGTG----------AAAAGAAACCCCACTCTAC---ATCTACTTAGGCTTTA---TGATGGGTCCACTCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAAGGCACAAGGATCAGGTGTGGTAACTG---AGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGTGATGACACAGAGAAAAAACTACTCAAACTCAGTTTCTTTACTTTA-----CTCATAGCACAAATCACATCTATGATCCCATAATATGCAGA-TATTTTCCCCACCA

a score=12649
s chr3            98753150 380 + 160039680 ACTGTGTTTTGCTATGTGGGCTGTTTCCTTTTGATGAATGTGGACATGGAGAAGTGTTATGACTGAAAGTGTCTTTTGTTTGCTAGACATGGGAGGATCCCTCCCA---TATGCAAGCTGTGTTGGCTATGCAGTCATGTGGCTAATTGTCACA-TTCACTTACTGAAGAATTGCTCCCTGGTTTCAGGTTTGAAGACCTTGTCCAGGACCCTGATCTCCTCAAGATCTTTCTCCTGCACCAACAACTGGATGATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACTGGAAGCAGATCACAGTTGTGCGAGGTTAATGTATCATGG--TCCTGGAGGTGGCTAGAAAGAGAGAT
s HiC_scaffold_1 108534833 371 - 233722169 ATTATGTTCTACCACCCG---TGATTACTCCTGGTGAGTGTGGACACACAGA-GCCTTAGGGCTCcaagttctttttcatttc-------aggAGCATCCCTCTCTACTCACTCAGGCT---TTCACAGTGGAGGCCCACA-CTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGTGACTGGGCACCCTGGAGAGAGCTAAAGAGAGAAGT

a score=11203
s chr3            98753174 355 + 160039680 TTCCTTTTGATGAATGTGGACAT-GGAGAAGTGTTATGACTGAAAGTGTCTTTTGTTTGCTAGACATGGGAGGATCCCTCCCATATGCAAGCTGTGTTGGCTATGCAGT---------CATGTGGCTAATTGTCACATTCACTTACTGAAGAATTGCTCCCTGGTTTCAGGTTTGAAGACCTTGTCCAGGACCCTGATCTCCTCAAGATCTTTCTCCTGCACCAACAACTGGATGATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACTGGAAGCAGATCACAGTTGT--GCGAGGTTAATGTATCATGGTCCTGGAGGTGGCTAGAAAGAGAGA
s HiC_scaffold_1 108393214 354 - 233722169 TTGCTTCTGATGAGTGTGGACATTGGAGATCCCTCATGGCTCCAAATTTCCTGTATTTGTT-----TAAAAAGCACTCCCTCACACACTTGCT---TAGGCTGTAGAATGGATCCTAACATG-----AAGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaa

a score=11656
s chr3            98753174 365 + 160039680 TTCCTTTTGATGAATGTGGACATGG-AGAAGTGTTATGACTGAAAGTGTCTTTTGTTTGCTAGACATGGGAGGATCCCTCCCATATGCAAGCTGTGTTGGCTATGCAGTCATGTGGCTAATTGTCACATTCACTTACTGAAGAATTGCTCCCTGGTTTCAGGTTTGAAGACCTTGTCCAGGACCCTGATCTCCTCAAGATCTTTCTCCTGCACCAACAACTGGATGATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACTGGAAGCAGATCACAGTTGT--GCGAGGTTAATGTATCATGGTCCTGGAGGTGGCTAGAAAGAGAGATCTGGTGATT
s HiC_scaffold_1 108449156 354 - 233722169 TTCTTTCTGATGAGTGTGGACATGGGAGATCCCTCATGGCTCCATAGTTcctgtatttgttttaaaaagca--ctcCCTCCCACAC-----TTGCTTAGACTGCAGAA-AATGAAGCT-----TCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTA-AAGAAAAAATCCAGTTATT

a score=12140
s chr3            98753174 351 + 160039680 TTCCTTTTGATGAATGTGGACATGGAGAAGT-GTTATGACTGAAAGTGTCTTTTGTTTGCT-----AGACATGGGAGGATCCCTCCCATATGCAAGCTGTGTTGGCTATGCAGTCATGTGG----CTAAT------TGTCACATTCACTTACTGAAGAATTGCTCCCTGGTTTCAGGTTTGAAGACCTTGTCCAGGACCCTGATCTCCTCAAGATCTTTCTCCTGCACCAACAACTGGATGATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACTGGAAGCAGATCACAGTTGTGCGAGGTTAATGTATCATGGT-------CCTGGAGGTGGCTAGAAAGA
s HiC_scaffold_1 108410409 350 - 233722169 TTCTTTCTGATGAGTGTGGACATGGAATATCCATTATGATCCCA--CATTtcctgtttgttttaaaaaacat-------ccTCTCCCACA----------GTTGGTTAGGCTGTAGAATGGATCCCTAATGTGAAATTTCCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGT-----GAGGATCAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaa

a score=7146
s chr3            98753304 193 + 160039680 ACTTACTGAAGAATTGCTCCCTGGTTTCAGGTTTGAAGACCT------TGTCC-------AGGACCCTGATCTCCTCAAGATCTTTCTCCTGCACCAACAACTGGATGATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTCACCAGGCAGCTCCACCCAGGCATGGTCAACACTGGAAGCA---------GATCACAGTTGTG----CGAGGTTAATGT
s HiC_scaffold_1 108373010 216 - 233722169 ACATACTAGAGAGTTGCTCCTTGTTTTATGGTCTGAATACTTGTTTTGTGTTCTGAATACAGGGCTCTGACTTGCTTCACCCACTTCTCCTGAACCAGCAAGTGAATGATCCTCTTGCCCAGAAAA---CCTGCTCCTGTCACCGGGCAGCTGTTCCCAGTCATGGCCAATATGCAAAGTAAAATGCAGTGGTCACAATTGTGATAACAAGGTGACTGT

a score=13830
s chr3            98790443 631 + 160039680 GAGAAAAAGCTGATGCAGCAAGGGTAAAGGAACACCACCTTCAGTGTAATCAAAGATGATACCCCAGAGCTTGTTAAGTGAATAATTAAAATCATCATAGCTTTGGGGAAGGAGTGTCACTGGAGATGTAGGAGAACTGCTCTTGGATGTGCTGTGACTATTTATGGTTTGT-AGGCCCCTGGCTGTCACAATATGTGATTGGGCCACACTGTTCACACACC----ATTAGCCACTATGGGTGATTTGCCAATAACATTTAGAATACAGTAAATTT--GAGAACCCTAA-CATTGTGTGAGATATGAATGTACCTCTCTTCTCATAAATGCACATGGACTGTAAGGCATGAGTATGTAAAGTGCCACTATCTTTCA-GGGTCAACCATTGGCTTCTAGCACTGTCTTCTT--GCCTAACATTTTGCAGTGTGGGCATAGATCAG-ACCATGTCCTCTCATGATCCTCTTCCTCATGGCTACTCAGGAATAT---CTTTTAGAAGATGGGCTCTAAAACCTC-----ATCTCAAGTAGTACATGACACCTAGCACATCTGATTGAACAGTAACCTCCAACAGGTTCTGGGTACCTAAACACAGACAACAAACACACTGTCACTCTCAGGACATAAAGAGAGGAATCCCCATG
s HiC_scaffold_1 108440705 636 - 233722169 GAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAG---AATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGA-GGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTAC---AGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAG---ATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCTGCAAGTGG-----GAACACAGGATCAGCATCAATAAATAACCCAGAGGTCTCCCATG

a score=14712
s chr3            98790443 628 + 160039680 GAGAAAAAGCTGATGCAGCAAGGGTAAAGGAACACCACCTTCAGTGTAATCAAAGATGATACCCCAGAGCTTGTTAAGTGAATAATTAAAATCATCATAGCTTTGGGGAAGGAGTGTCACTGGAGATGTAGGAGAACTGCTCTTGGATGTGCTGTGACTATTTATGGTTTGT-AGGCCCCTGGCTGTCACAATATGTGATTGGGCCACACTGTTCACACACC----ATTAGCCACTATGGGTGATTTGCCAATAACATTTAGAATAC-AGTAAATTTGAGAACCCTAA-CATTGTGTGAGATATGAATGTACCTCTCTTCTCATAAATGCACATGGACTGTAAGGCATGAGTATGTAAAGTGCCACTATCTTTCA-GGGTCAACCATTGGCTTCTAGCACTGTCTTCTTGCCTAACATTTTGCAGTGTGGGCATAGATCAGACCATGTCCTCTCATGATCCTCTTCCTCATGGCTACTCAGGAATAT---CTTTTAGAAGATGGGCTCTAAAACCTCA-----TCTCAAGTAGTACATGACACCTAGCACATCTGATTGAACAGTAACCTCCAACAGGTTCTGGGTACCTAAACACAGACAACAAACACACTGTCACTCTCAGGACATAAAGAGAGGAATCCCC
s HiC_scaffold_1 108402352 630 - 233722169 GAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAG---AATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGA-GGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTAC---AGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAG---ATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGG----TGAGCACAGGGTCAGCATTCATAAATAAACCAAAGGTTCCCC

a score=41058
s chr3            98805325 1648 + 160039680 AGTCATCTAGTGCACACTGGAAGGACAATACGTTGGAAATAGTCTCACATCTGCATCTGTTTCTGATTTTCCC-----TCAGTGCATCTCAGATCCATGATCCCCTTCTGATTTTAGCATAAAATTAT--CTGGCGAAAAAAGGGATATATA-GTTGTTTACTTAAAGAAAAACACAATCCACAGATGAGGTATTGACAAGTATTTATTGTTTCTTCCATTGGGTTTCATAAAGCAAGTAGAATTTTCTGAAGGCTATACATGCTCTGAATGGGGAGAGAAAATAATGGA--------GAGAGCTCTGAGGTACAAGAGGTGCTGAGAGGCTTGGACC----------------CAGGAGCTGGGGCACAGATGCCTGTGTGTCTTTGGGGAGGTATTTCAGAAAGAAGGCTTGTGGCTGGGTCAGTGACTGGCAAGGCTT-TGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTGT-TGTGCTTTTGTC-CTTACT----------GGAGGAC-----CTGGTAACACCCAGAGCCATGTCTCCACCCTCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTGCTACCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATAAATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCATGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAGGGCAGAA--GCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTTTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTACCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCGTACAACCGAGAATATTCTTATTTTTGAGGGCCGTAATTATTGTGTTAGAAATGAATGGACTTCTCTCCCCATAAATATACATGGGCCTTAATGCACAAGTATGCAAAGTGCCACCAATTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATATGCTTTCATGATGCTCTTCCTCGTTGCCATTCAGGATTATCTCCTTGTATGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGAACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCTGAGGTTCACCATGTGCAAAGCTTCGTGCTCATTTTCA----TGCCCTAGCCCAACAACCTCTTCACTCTTAATGTGCATCTTCTTTAACTGCACTCATGGCTACCACGATATTGCCAGGGGAC----TACAAATGGAATCCAGA--------------------GAGCAAGTATGTCTTGGCCTTTGTGTTCACAGAAC---TGTGAGTGTGTACTTGCTTGTGTGTTTGACTGGGTGTTTTTCAACTTTAA-AAGGCACCTAAAGTGTCTTATTAATTCA------TTCCTAACGGGTCTATGAGATAA
s HiC_scaffold_1 108297845 1649 - 233722169 AGTCATCTAGTACATGTCTAAAACCTAGCAGGTCTTAGTCATTCTTAGATCC-CATC-----CTGACTTTACCACCACTCTGCCCATCCCAGTTACATGATCC--TTCTGAACT--ACAGAAGGCCATGTTtggaaatggaaggaaaatgtATATTATTAAC---AAAACTCATACTTTCTTTATATTAGTCCT---Aaagcatttattgtttttccta---AGCTTTATGCAAAATG-AgagtttttcaaagaaaagaaacaatttaacaaTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAAACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCTTGTTTTTCCTCATTG-GATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTG----------------------GCCACTGCTTGAAAAGCAGTGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTGAGTCTCTCC--TCTGAGTCCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTAC-ATTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTGATATAGTTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCAGGAAATAACAGAGT----CATTTCAGGTTCATTTTCACTTCCTCCCCAGCGGAAGTTGCTGTTTAATATTTGGGTATAACTTTTTCTCTCTGACTCAGATGTATTATGGTATAGTTTTaggaaaaggcaaaaatgaaaaaaagaagggatATTTTCATTGTGTTGAACAAATAT-TCTTGGTTTTTGGATTTGTGgaatgtgtatatgtgtttacGTGCTTGTGATTTT------ATGTTCATTGATTTTGATAAAGCATATAAAG----TTATTAGTTCGTATTTTTCCATAATGGA--TATGAAATAA

a score=41238
s chr3            98805721 1110 + 160039680 ACTGGCAAGGCTTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTGTTG-TGCTTTTGTCC-TTACTGGAGGA-----------------------------CCTGGTAACACCCAGAGCCATGTCTCCACCCTCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTGCTACCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATAAATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCATGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAGGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTTTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTACCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCGTACAACCGAGAATATTCTTATTTTTGAGGGCCGTAATTATTGTGTTAGAAATGAATGGACTTCTCTCCCCATAAATATACATGGGCCTTAATGCACAAGTATGCAAAGTGCCACCAATTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATATGCTTTCATGAT-GCTCTTCCTCGTTGCCATTCAGGATTATCTCCTTGTATGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGAACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTC-----AGTGTCTGAGGTTCACCATGTGCAAAGCTTCGTGCTCATTTTCATGCCCTAGCCCAACAACCTCTTCACTCTTAATGTGCATCTTCTTTAACTGCACTCATGGCTACCACGATATTGCCAGGGGACTACAAATGGAA
s HiC_scaffold_1 108360820 1135 - 233722169 ACCAGCAGGCATCTGGTGGCCTTTGAAAGACAGTAAGTTG-CCATTGTGTCAGAGGGAGAGTGTATGACTTGTACTCCTGCCTTTGTCAAGTTCtgcaggaagtcagaaggaggaaGTAGGTAAATAGCTCCAGGCATCACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGGCCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCATGGA-AGCACATGGCCTGTATAATGTAGAGACTCCATCATAT-CCAAGATTCATGTTCATGCCTTTTTTCTTCCCAAAGGAAGTTATTA-TTTGAGtgtgatttgtctttttcctgactgA--GATACTATGCTATAGTtggagga----aaatagaa

a score=48170
s chr3            98805732 967 + 160039680 TTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTG-TTGTGCTTTTG----------------TCCTTACTGGAGGACCTGGTAA-------------CACCCAGAGCCATGTCTCCACCCTCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTGCTACCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATAAATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCATGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAGGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTTTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTACCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCGTACAACCGAGAATATTCTTATTTTTGAGGGCCGTAATTATTGTGTTAGAAATGAATGGACTTCTCTCCCCATAAATATACATGGGCCTTAATGCACAAGTATGCAAAGTGCCACCAATTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATATGCTTTCATGATGCTCTTCCTCGTTGCCATTCAGGATTATCTCCTTGTATGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGAACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGT
s HiC_scaffold_1 108401962 996 - 233722169 TTTTGTAGCCTTATGAAGACAATAAGTTG-CCATGGTGTCACAGTCAGGCTGTAGGATCTGCGCTTGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCACAGGGTCAGCAT

a score=49152
s chr3            98805732 1194 + 160039680 TTTGGTGACTTGATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTG-TTGTGCTTTTGTC-CTTACTG--------------GAGGA--------------CCTGGTAACACCCAGAGCCATGTCTCCACCCTCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTGCTACCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATAAATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCATGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAGGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTTTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTACCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCGTACAACCGAGAATATTCTTATTTTTGAGGGCCGTAATTATTGTGTTAGAAATGAATGGACTTCTCTCCCCATAAATATACATGGGCCTTAATGCACAAGTATGCAAAGTGCCACCAATTTTCAGCATGCTCCCATTGGCTGCCAGCACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATATGCTTTCATGATGCTCTTCCTCGTTGCCATTCAGGATTATCTCCTTGTATGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGAACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCTG------------AGGTTCACCATGTGCAAAGCTTCGTGCTCATTTTCATGCCCTAGCCCAACAACCTCTTCACTCTTAATGTGCATCTTCTTTAACTGCACTCATGGCTACCACGATATTGCCAGGGGACTACAAATGGAATCCAGAGAGCAAGT-ATGTCTTGGCCTTTGTGTTCACAGAACTGTGAGTGTGTACTTGCTTGTGTGTTTGACTGGGTGTTTTTCAACTTTAAAAGG
s HiC_scaffold_1 108528340 1219 - 233722169 TCTTGTGGCCTTAGGAAGATGGTAAGTTG-CGATTGTGTCAGAGGA-GCCTGTAGGACTTGGGCTTGTTCCTTTGTCACTTTCTGAACAAAGACATATGGAGGAAGTAAATTAAACTTCCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGG-AACACAGAGTCAGCATCAGAAAATAAGCCAAAGGTTCCCCCATGGATAAGAATCATGTTCATATCCAGTTCCT--CCCCATGAGGT------GATTAATACAGATCTAC-CAGGTTGCAgtcagagc-aaaataaaaatagaaatggactAACATTTGTGTTGTGATAAGAAATAATATGTGAGTTTTTGTgttc---tatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttt--tttgaAAAGG

a score=44909
s chr3            98805744 929 + 160039680 ATTAAGGCACTAAATTGGCCTCTGTGTCAAAAGAAGGCAGCAGCACCTGTG-TTGTGCTTTTGTCC-------------------TTACTGGAGGACCTGG---TAACAC------CCAGAGCCATGTCTCCACCCTCTTCCCATCACTGAGACTTTGTGTCCAGTGTCTCCCTGTGCTGCTCCACTAGTGTCCCGATCCACTCTGAGGTTTTCTGCTTGGCTTCCTCCCAGCTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAGGAGAAAGTGAACGTGCTACCTGTCAGTGTGACCAAGTGGCGGTTAAAGGGAGGTATAAATCTGTAGATTGGACTCAGCAGGAAGCTCACAGTTTCCAGCATGAATGCAAGCCAGTACAGTAGGGGCACAGGAAGGCTCCAGCTGGAATCAGGGCAGAAGCCCCACTCCTTGCTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTCTCCTTGGATATTTGGTGACTTTTTGGGGTCTCGAAGGCCCCTGGCAGCCAGAATGTGTGCCCAGGCTACATTACCCACATATACTGGGTTGGCTGTGGAGAATTTGCCCGTACAACCGAGAATATTCTTA-TTTTTGAGGGCCGTAATTATTGTGTTAGAAATGAATGGACTTCTCTCCCCATAAATATACATGGGCCTTAATGCACAAGTATGCAAAGTGCCACCAATTTTCAGCATGCTCCCATTGGCTGCCAGCACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGATCAG-ACCATATGCTTTCATGATGCTCTTCCTCGTTGCCATTCAGGATTATCTCCTTGTATGAGTTGGGCCCTGCAACATCAACTGAGCTGGAGAAGATGAAGGCTGGAACACTGGCTTGGATACAGGCCTCCAATAAGTTCTGGGTACCT
s HiC_scaffold_1 108440328 961 - 233722169 ATGGAGACAATAAGTTG-CCATTGTGTTACAGTGAGACTTTAGGATCTGTGCTTGTGCCTTTGACAAGTTATGGAGGAAGCCAGATTGAAGAAGAACATAGAAGCAACACGTGTCACAAGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCT

a score=9609
s chr3            98807621 351 + 160039680 AGTACTGTGCTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGCTGGTGTGTG--TGGACATTAACTGCCCTAC---TTTCACCTTGTCCTCTCCAAATACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGG-AACACAAAAGCAGGTTACTGAGAAATTTCTTTGTGGG
s HiC_scaffold_1 108374347 346 - 233722169 AGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGACCAGAACCCAGAAG-----CAGTGGAGCTTCTCCTCTTTTTGCTACTTCACCTACCATCATTTTCCCTACCTGTTGCATCTCAT--GCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGA-CAGATTATCAGGAAA---CTTGGTGGG

a score=8308
s chr3            98807629 587 + 160039680 GCTCTACCAGCTGGATCTAGTGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGC----------TGGTGTGTGTGGACATTAACTGCCCTACTTT-CACCTTGTCCTCTCCAAATACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGG------AACACAA------AAGCAGGTTACTGAGAAATTTCTTTGTGGGCTGTATACACCTAGATTATCAAAAATTGTCATAGTGGGAAAAATGTCAGAGAGGAAGCCTGGCATATAGAAAGAG---------------------------------------------------AGGCAAATATTCTTTCCCCCTG------CAGAAAACAAATCAGATAAACAAGCAGTCA--------------------AATGTTCAACAGAGTAGGTGGGAAGTTGACTAATTCATCAAAGTGAATAAGGTGGTAATGGAGAGCTGGCTAGAAGTGGGATTAGCAGTCAGAAT---GTCTATCCCAGGGTTTTGATGA
s HiC_scaffold_1 108301711 643 - 233722169 GCTCTGTCCATTGGAAGTGATGAGCAAATGCACCTGGGTCAAAGCCCAACATCAGTTCCATGGTGgggcttctctttccctctccatcTGTTGTGT------------TGTCTTCCTTTGCAACTGG--CTTTCAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttc------agttttctgagaaagG---ATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTACATACAA----GATGAAAAATCAGACTTCAATCTACTCTCCGGTTCTggtaa

a score=11903
s chr3            98807649 382 + 160039680 TGAGCAGAGGCATTAGACTCATAGTATGGAAGGTATTCCATGCAAAAACATCCCTTGCTGGTGTGTGTGGACATTAACTGCCCTACT-TTCACCTTGTCCTCTCCAAATACAT-------TACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGGAACACAAAAGCAGGTTACTGAGAAATTTCTTTG---------------------TGGGCTGTATACACCTAGATTATCAAAAATTGTCATAGTGGGAAAAATGTCAGAGAGGAAGCC
s HiC_scaffold_1 108444617 397 - 233722169 TGAGCAAAGGCTTTTGGATCAGAACTCTGCAGGTGTTCCAC----AGGGGTTCTTCTCTGTCCTTT-------CTCATCTCCATGCTATTCCCCTT---CCCATCAGCTGCATGTTGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTGATAAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCC

a score=9480
s chr3            98807714 309 + 160039680 TGTGGACATTAACTGCCCTACTTTCACCT--TGTC-----CTCTCCAAATACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGGAACACAAAAGCAGGTTACTGAGAAATTTCTT------TGTGGGCTGTATAC-----------------ACCTAGATTATCAAAAATTGTCATAGTGGGAA-----AAATGTCAGAG
s HiC_scaffold_1 108365753 342 - 233722169 tgtGTTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGC-AGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACAC-AGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGATGTAGAGGTCAGAG

a score=9312
s chr3            98807756 210 + 160039680 TACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGG-AACACAAAAGCAGGTTACTGAGAAATTTCTT
s HiC_scaffold_1 108389313 208 - 233722169 TACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAA-TAGGTCATTAGGAAGTTTTCT

a score=10920
s chr3            98807756 271 + 160039680 TACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGG-AACACAAAAGCAGGTTACT-GAGAAATTTCTTTGTGGGCTG-----TATAC---------------ACCTAGATTATCAAAAATTGTCATAGTGGGAAAAATGTCAGAGAGGA
s HiC_scaffold_1 108531452 292 - 233722169 TGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAA-CAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATAAGTCGACAGtacatagacttttaaaaatattcatagcaaggagatatccaggaatGA

a score=11637
s chr3            98807756 294 + 160039680 TACATTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCTGCAGTGTGGATAACAACAGAGATGCCCTGGCAGGCTTTCCTCAGGTACTGGGTGTCAAGAATGTCTCCTTCCAACACTGTCACCTTGATGTTTGTATCTAGGTCTGTGGAACACAAAAGCAGGTTACTGAGAAATTTCTTTGTGGGCTGTATACACCTAGATTATCAAAAAT----TGTCA--TAGTGGGAAAAATGTCAGAGAGGAAGCCTGGCATATAGAAAGAGAGG
s HiC_scaffold_1 108405683 291 - 233722169 TGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTT--------CTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCA-AGAATATTCCTAGCAGGGAGATATGGAGG

a score=13971
s chr3            98809594 1525 + 160039680 CCTGGCAGAGAAAGGACA---CTTCTAGGAATCTTCACTCTTATGCTTAGGCACGGCCTTTTCTATGCATACCCTTT--TCTATGCATACCCACTGTG--GAGCTATTCCTCCAGACTGTG------CTTTGACTGTTTGCAATTACTGAGACATCAGGATTCT-----------------AATATAATTCGCTGTGTGTTAATATTGCTTTCTGGAAGCAACACTGAAGCCG-ATAGAGAAGAGGACTGATGCTGGAAGAGGTCAGAGAAAAGATGCAGAGAATGGGTGTTGTCCCAGAGGGCTATGGAGGGCTCTTTGTGCAGAGCATATCCCTAGGTAATGTACATTTTCCCTTGA-AGCTGGGGAGAGGGCAAAGAACTAGCTTTGGCCACATACAG-------ACAATGGGAATGAAGGTTC--TGGATGTAAGAGTTGACCCCTGGACAAAATACTGAAGCTTAAGTGAGGGGCCTCCAGCTTGACCTGTTCTGCT--TATTAATCATAGGATACTGCTAG--AGTCATTTTTCTTGTTCCAACTTAAAGTCCTTGCTGTTCAGGTCAGTGA--CCTTTCCTTCTTTCCCTGCAAAGTTATTTTAATGACCTGAGGTTTCCAATAGGTGATAAAATATATT------TCAAAATCTGTTGGTTCAGTTTTGC----ACAGAATAACAAATTAGGAAAAG-GTTAGTGGCCTGCACGAGTCAATTCTGCAATTTTATTCATAGTACTGATAAACTCTAGTGAGGA---GTGGGGACAAATAAATAAGAACAGTCCATGAAATGTATG--GAAAGTCCTG----CTCATGGT---------------GGCTTTGTATAGGTTCCTTG---GTATGACCTAATGCTCAGAAATCCACTTTCTCAATCCGCATCTCTGT----------GTCTTTCTGTCTGTTGTTCCTACCCCCATCCCT-----------CTCCCTGTCTCCTTACATTTC----AATCCTTTTC--------------------------------------------------------ATGTATTTTTTCTTTTTCATTTTACTTCTTTTTA---------------------------AGATGC-------------TAAATGAAAGAACCCCCCA-------------------------------------CCACCACAAAA----------------------AAGCAAA--CAAGCACAAAACAAGCAACTAGATAAATAGCCATTAGAAGAGAGAGAGAGTGCTAGTGCTGAGGCC-CCAGCTTAACAGTCTTTATGCCTATTACC-----TAACAACTGGCAAGTCCACATAAAAGAGCTACAGGAAAG-ACAGAACT----------------------------------------------TCC------------------CAGTCCAAACTCT-GTCTCTCCCAAACTG--------TGTTTTTGCTATGTGGGCTGT--TTCCTTTTGACCAATGTGGACATGGAGAAGTGTTAGGACTGAAAGTGTCTTTTGTTTACTAGACAAGGGAGGATCCCTCCCA---TATGCAGGCT------GTGTTGACC---ACACAGTCATATGGCAAATTCTCATGTTCACTTACTGAAGAATTGCTCCCTGGTTTCTGGTCTGAAGAACTTGTCCAGGACCCTGATCTCCTCCAGATCTTTCTCCTGCATCAACAACTGGACAATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTTACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAAGCAGATCACAGTTG-GTGTGAGATTAATGTACAGTGACCCTGGAGATGGCTAGAGAGAGA
s HiC_scaffold_1 108533407 1794 - 233722169 CCTGGCAGGGGGAGAAAAGAGTGTTGAAGATCCTCTACTATTACTTCTCAGCGGG----CTTCTGCACATTCCTTGCACTCCTTGGATTGTCACTATGAGGATTTATTCCTTGAGTCTGAGAATGTCCCTTTCCTGCCATAAATAGTTaagttctaaatatttttctgaggaaaaattacaAACATTTCTCATTGTGTGTTAGTATTTCTTCACGGAAACAACATTGAAGCAGTAAATGGAGGACGATGGACTGTGGAACAAGTCAGAGAAAAG-TAGAGAAGCTGGG---------AGAAGAGCAGGAAGGTCT----------------------GGAAATCCAGGGATCCCGTGGACAGATGGTGAG-TGGCAGATAA-TAGATTTGGA-GCacccaggagaaccaggaggggGATTGATGTCTGATGGTGTTAAGAGTAAGCCCCCAGCCCGG-TGATGAGACCCCTGGGATAGAGTTCTGACCTG---TGTTCTGCTCCTATTAA--ACAAGTGACTTCAGGCCAGacacttttcttttctgtcttcaaagTATGTGATGTGCCCATGGATGAGCCCCTTCCTGCTTTATC-ACAGAATTACTTTGAAAAACAGGAAT---AAACAGCTGGTAAAATGCAATGTTCATCCAGCAGCTGTATTATTTGCATTGCTGCCACAGGACCAGCAATTCTTAAAAGCAATAATGGACAGTACCAGCATATTA-GCAGTGGCTTTCTTTGTGGGGATAAAGAGCAGAGGGAAATAGTGGGAACAGCATAAGAGGAACA--------AACGTAGGAAGAACGTCCCAGTCCCTTATGCTTCTCACTTTGACTCTGGCTCTGCACAGGCCACTTGTCTGTTTACTCTtattctgtgt------ctgtctctccttgTATTTCTCTTTGGCTCactgtctttttatctttttccctctcttccttcccttctttcattctctccttccttccttccattttctataatccttttctttctttatccctggattcctccctcccttcctctctttcccatcatttcttccttctttcttttctctctctcctgttccctctctctgtctctctcactctgtcttgcACAACACACATGcagtcacacacacatgcatacacacacccCACATACACTTGGTCAGCtttactttagatttttttcttttccctcacaaAAGATCCTAAGTGAGTCccttaaaaagcaaaactaaagacaAGAAAAGGGCCCAGGGAAATC--------AAATGAGGCAAAGTTCCACTACTGCAACCTCCAGCTTAGTAGTACTT-TGCCTGTTTTGCATAGTAATCACTGAACTGAGCACATTAATTAGCTACAAGAGAGGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGAGAAGTTTACCAGCCTGTGTCCACCTTGTCTAGTACTGAGCAGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGATTACTCCTGGTGAGTGTGGACACACAGA-GCCTTAGGGCTCcaagttctttttcatttc-------aggAGCATCCCTCTCTACTCACTCAGGCTTTCACAGTGGAGGCCCACACTCAGTCCCACAGC------------TCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGTGACTGGGCACCCTGGAGAGAGCTAAAGAGAGA

a score=9410
s chr3            98810676 659 + 160039680 CAAGTCCACATAAAAGAGCTACAGGAAAGACAGAACTTCCCAGTCC---AAACTCTG---TCTCTCCCAAACTGTGTTTTTGCTATGTGGGCTGTTTCCTTTTGACCAATGTGGACATGGAGAAGTGTTAGGACTGAAAGTGTCTTTTGTTTACTAGACAAGGGAGGATCCCTCCCATATGC--AGGCTGTGTT----GACCACACAGTCATATGGCAAATTCTCATGTTCACTTACTGAAGAATTG----CTCCCTGGTTTCTGGTCTGAAGAACTTGTCCAGGAC-CCTGATCTCCTCCAGATCTTTCTCCTGCATCAACAACTGGACAATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTTACCAGGCAGCTCCACCCAGGCATGGTC-AACACAGGAAGCAGATCACA--GTTGGTGTGAGATTAATGTACAGTGACCCTGGAGATGGCTAGAGAGAGAGAG--AGAT--------------------CTGGTGAT---------------TTCCCCAAACCCAGTTTCTCCCTCAAACCTCCCATAGCACAGATCAGG-----------AGACAGGGGGAAAATTGTCCACAACAG-------AAATCAAT-------------GTATTCCAATGTGTACC----------AAGAAACTGTCCACTCATGGAGTATggctgtttcacaatatttctcctttac---ctaaatgcctgttgcaagc-ctgggttatttcacctgtgcttctgaagaa
s HiC_scaffold_1 108302721 729 - 233722169 CAGGTCCTGGCATAAGGCACAGAGAAAGGATAACACATTCAGCTCCTGAAAGCAGTGCAATGTCTTTTATACTGTGTCCT--CTATGAG-------TTCTCTTGCTGAATGTGGACATGGGAAGAGTCTTTGGCTCCAAGTTTCCTTCGT------GAAAAGAAACCCCACTCTACATCTACTTAGGCTTTATGATGGGTCCACTCTGTCA--------AGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAAGGCACAAGGATCAGGTGTGGTAACTG---AGTGATTCTGcaaaaagccagagaaaaagaTCCAAATGGCACAGGGCATATAAGCCACTAGTGATGACACAGAGAAAAAACTACTCAAACTCAGTTTCT---TTACTTTACTCATAGCACAAATCACATCTATGATCCCATAATATGCAGATATTTTCCCCACCAGATGTGAAAAATCATTGCTACAGTAAGCAGCAGTTCTATCTGACCCCGATTATCTGGAGAGACTCAGATCATATAGGGAAAAGCCTTTGTTCACCTTTGTTCTGGCACAGTTCAGATGCCAGTTACAACCTCCAGGTTATTTTATCTGTGCTTCTGAGCAA

a score=12611
s chr3            98810765 356 + 160039680 TTCCTTTTGACCAATGTGGACAT-GGAGAAGTGTTAGGACTGAAAGTGTCTTTTGTTTACTAGACAAGGGAGGATCCCTCCCATA--TGC--AGGCTGTGTTGACCACACAGTCATATGGCAAATTCTCATGTTCACTTACTGAAGAATTGCTCCCTGGTTTCTGGTCTGAAGAACTTGTCCAGGACCCTGATCTCCTCCAGATCTTTCTCCTGCATCAACAACTGGACAATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTTACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAAGCAGATCACAGTTGGTGTGAGAT-TAATGTACAGTGACCCTGGAGATGGCTAGAGAGAGAGA
s HiC_scaffold_1 108393214 354 - 233722169 TTGCTTCTGATGAGTGTGGACATTGGAGATCCCTCATGGCTCCAAATTTCCTGTATTTGTTTAAAAAGCAC---TCCCTCACACACTTGCTTAGGCTGTA--GAATGGATCCTAACATG---AAGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaa

a score=12688
s chr3            98810765 370 + 160039680 TTCCTTTTGACCAATGTGGACATGG-AGAAGTGTTAGGACTGAAAGTGTCTTTTGTTTACTAGACAAGGGAGGATCCCTCCCATATGCAGGCTGTGTTGACCACACAGTCATATGGCAAATTCTCATGTTCACTTACTGAAGAATTGCTCCCTGGTTTCTGGTCTGAAGAACTTGTCCAGGACCCTGATCTCCTCCAGATCTTTCTCCTGCATCAACAACTGGACAATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTTACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAAGCAGATCACAGTTGGTGTGAGAT-TAATGTACAGTGACCCTGGAGATGGCTAGAGAGAGAGAGAGATCTGGTGATT
s HiC_scaffold_1 108449156 354 - 233722169 TTCTTTCTGATGAGTGTGGACATGGGAGATCCCTCATGGCTCCATAGTTcctgtatttgttttaaaaagca--ctcCCTCCCACAC-----TTGCTTAGACTGCAGA---AAATG--AAGCTTCCAT-TTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTAAAGA-----AAAAATCCAGTTATT

a score=13595
s chr3            98810765 359 + 160039680 TTCCTTTTGACCAATGTGGACATGGAGAAGT-GTTAGGACTGAAAGTGTCTT--TTGTTTACTAGACAAGGGAGGATCCCTCCCATATGCAGGCTGTGTTG-ACCACACAGTCATATGGCAAATTCTCATGTTCACTTACTGAAGAATTGCTCCCTGGTTTCTGGTCTGAAGAACTTGTCCAGGACCCTGATCTCCTCCAGATCTTTCTCCTGCATCAACAACTGGACAATCCTCTGGCCCAAAAACCCTCCTGCTCCAGTTACCAGGCAGCTCCACCCAGGCATGGTCAACACAGGAAGCAGATCACAGTTGGTGTGAGAT-TAATGTACAGTGACCCTGGAGATGGCTAGAGAGAGAGAGAG
s HiC_scaffold_1 108410409 357 - 233722169 TTCTTTCTGATGAGTGTGGACATGGAATATCCATTATGATCCCACATTtcctgtttgttt------taaaaaacatccTCTCCCACA-GTTGGTTAGGCTGTAGAATGGATCCCTAATGTGAAATTTCCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGATCAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaag

a score=15884
s chr3            98817930 806 + 160039680 AAAATACAATGAAATTTTAC----GGAAATATTGAGACTGAGGGCCATG--------CTATCAGAGAGTGAGTGAGCACAGCAAATGTTCAAAAGCAGGGGTCACCCACTACCTGTTCTTCCAT--TATCATTTTTCTATGGGC---TCCATATT-TTCTTCAGGTACTGTACCTTTCA--------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAA--GAAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGGACACAAA--GCATGTCCTTGGGAAACTTTCTGCATGGG-TGGAAATTTCCTGACACAGGTGTCAGT---TACCTAGGCCTTCAAGAGAAATAATGGTAAGAAGACAATGGGA----AGGACGC-CTTTCTACAGAAGGAAGC-ATAAACACTCAAAAAT--CAGAATGTAGTATTTTTAGGGAAGGAGGAAGCATCTATATCCATCCCATCCCTTTGTAGAAAATGTGTCTGAGCAGTAAGATTTCTGCTTTGTA-CATAAACA------------GAGTTATGGGAAATTC--CTACATTCAATAAAGCAACTGAAGAGGTGGTGGCATTCACGTATAAGGAGGGAAAAGCA-TATTTAATTG-ATAGGTAATGGGGAAATCATGTGTGGATTTGAAGAAGAAACAACACTGGAGTTCTGTCTTGGGAAGCTGTGGCATCAACCTGGG-------------GTTATAA-GTTGTGAAGGCATAGGAGAAATCTAGATAATGAACATGCTAACCAGATTGTGTCCTCCAGAATTC
s HiC_scaffold_1 108405525 861 - 233722169 aaaaaacaagaaaatattatcTTTGAGTATAGTCAGA-TGAGAGTCCTGAACAAAGGCTGTTGGATAA-----GAACTCAGCAGGTGCTCTACAG-GGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGT-TGCAACCGATTCTTTTGCAGAACATGAATCTGAGTGGTA--ATCTCTGATGAGTATCATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgaggcagtgtTGTGAATAG----GACACTCACCTTGGCACCAGGATGTCCATTATACTATTGCAAAGATATAGTAGAAAACAAGGC-TTCAATGCACTAATCATAGTGTCGCTGCCAGAATTC

a score=9950
s chr3            98817944 381 + 160039680 TTTTACGGAAATATTGAGACTGAGGGCCATG-------CTATCAGAGAGTGAGTGAGCACA---------GCAAATGTTCAAAAGCAGGGG---TCACCCACTACCTG----TTCTTCCATTATCATTTTTC-TATGGGCTCCATATT-TTCTTCAGGTACTGTACCTTTCA--------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAA--GAAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACACAAAGCATGTCCTTGGGAAACTTTCTGCATGGGTGGAAATTTCCTGACACAGGTGTCAGTTACCTAGGCCTTCAAG
s HiC_scaffold_1 108374323 405 - 233722169 TTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTG-GTGAGCAAATGCACTTGGACCAGAACCCAGAAGCAGTGGAGCTTCTCCTCTTTTTGCTACTTCACCTACCATCATTTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT--------GGTGGGAACTTTTTA----AAGTGATGGTTATCTTTGACTTCAAG

a score=18938
s chr3            98817947 903 + 160039680 TACGGAAATATTGAGACTGAGGGCCATGCTATCAGAGAGTGAGTGAGCACAGCAAATGTTCAAAAGCAGGGGTCACCCACT------ACCTGTTCTTCCATTATCATTTTTCTATGGGCTCCATATTTTCTTCAGG-TACTGTACCTTTCA--------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAA--GAAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACACAAAGCATGTCCTTGGGAAACTTTCTGCATGGGT--GGAAATTTCCTGACACAGGTGTCAGTTACCTAGGCCTTCAAGAGAAATAATGGTAAGAAGACA-ATGGGAAGGACGCCTTTCTACAGAAGGAA-----GCATAAACACTCAAAAA--TCAGAATGTAGTATTTTTAGGGAAGGAGGAAGCATCTATATCCATCCCATCCCTTTGTAGAAAATGTGTCTGAGCAGTAAG-----ATTTCTGCTTTGTACATAAACAGAGTTA-----TGGGAAATTCCTACA--TTCAATAA-AGCAACTGAAGAGGTGGTGGCATTCACGTATAAGGAGGGAAAAGCAT-ATTTAATTG-ATAGGTAATGGGGAAATCATGTGTGGATTTGAA---GAAGAAACAACACTGGAGTTCTGTCTTGGGAAGCTGTGGCATCAACCTGGG-------------GTTATAA-GTTGTGAAGGCATAGGAGAAATCTAGATAATGAACATGCTAACCAGATTGTGTCCTCCAGAATT---------------------CCAGTGAAAAGATTCAGAAGA-GGGAGACACAAAGATGG-ACATTTCATCCCTGCCCCTGATAGTTCTTGATATTTTCTGGGTCTGTGCTGAGAACAAATGAAGAGTTAGCTGAATT
s HiC_scaffold_1 108531324 960 - 233722169 taccaaaaaataatagcTCTGAGTTTTGTTAGCTGAGAGTG-GTAAGCAAAG--ACTCTTCAG-----GGCTTCACTCTCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATA-AGTCGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTGACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATGAACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAGATAGTTTGATACA--GAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAGG----CAGGCCTGTGAA--TAGGACACTTACCTTGGCGCCAGGATGTCCAATATACTGTTGTGAGGATATAAGAGAAAACAGGGCTAC-AATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGA-GCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCA-----GAAAAATCAGTTAAGCT

a score=16688
s chr3            98817991 846 + 160039680 GAGCACAGCAAATGTTCAAAAGCAGGGGTCACCCACTACCTGTTCT----TCCAT--TAT-CATTTTTCTATGGGCTCCATATTTTCTTCAGGTACTGTACCTTTCA--------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAA--GAAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACACAAAGCATGTCCTTGGGAAACTTTCTGCATGGGTGG--AAATTTCCTGACACAGGTGTCAGTTACCTAGGCCTTCAAGAGAAATAATGGTAAGAAGACAATGGGAAG-GACGCCTTTCTACAGAAGGAAGCATAA--------ACACTCAAAAATCAGAATGTAGTATTTTTAGGGAAGGAGGAAGCATCTATATCCATCCCATCCCTTTGTAGAAAATGTGTCTGAGCAGTAAGATTTC-----TGCTTTGTACATAAACA---------GAGTTATGGGAAATTCC--TACATTCAATAAAGCAACTGAAGAGGTGGTGGCATTCACGTATAAGGAGGGAAAAGCA-TATTTAATTG-ATAGGTAATGGGGAAATCATGTGTGGATTTGA------AGAAGAAACAACACTGGAGTTCTGTCTTGGGAA---GCTGTGGCAT--CAACCTGGGGTTATAAGTTGTGAAGGCATAGGAGAAATCTAGATAATGAACATGCTAACCAGATTGTGTCCTCCAGAATTC------------------------CAGTGAAAAGATTCAGAAGAGGGAGACACAAAGATGGACATTTCATCCCTGCCCCTGATAGTTCTTGATA-------TTTTCTGGGTCTGTGCTGAGAACAAATGAAG
s HiC_scaffold_1 108444638 913 - 233722169 GAACTCTGCAGGTGTTCCA---CAGGGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGTT----------GCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGATGGACAGGTAATTTTACTG--ATAAGTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTAT-GgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGGCTGTGAAAAGGGTACTCACATTGGTACCACAATGTCCAGTGACCTTTTGTGaggatacaaaagaaaacaagactgc-AGTGCACTAATCAGAATGTCTCTGCCAGAATTCATAAGAGggcaaaccaggtcccagcagtaggaaga-gaagaagggagaacCAC-AAGCCATCAGTTTCAGGCTTTCCCATAACAGGTCTGGGTATGTAACTTTGTCTTGG-ATGTGCAGAAAACTGATTAAG

a score=15778
s chr3            98818011 821 + 160039680 AGCAGGGGTCACCCACTACCTGTTCTT---------CCATTATCATTTTTCTATGGGCTCCATATT-TTCTTCAGGTACTGTACCTTTCA------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAAG--AAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG--ACACAAAGCATGTCCTTGGGAAACTTTCTGCATGGG-TGGAAATTTCCTGACACAGGTGTCAGT---TACCTAGGCCTTCAAGAGAAATAATGGTAAGAAGACA-ATGGGAAGGACGCCTTTCTACAGAAGG-----AAGCATAAACACTCAAAAATCAGA-ATGTAGTATTTTTAGGGAAGGAGGAAGCATCTATATCCATCCCATCCCT------TTGTAGAAAATGTGTCTGAGCAGTAAGATTTCTGCTTTGTA-CATAAACA--------------GAGTTATGGGAAATTCC--TACATTCAATAAAGCAACTGAAGAGGTGGTGGCATTCACGTATAAGGAGGGAAAAGCATATTTAATT--GATAGGTAATGGGGAAATCATGTGTGGATTTGA------AGAAGAAACAACACTGGAGTTCTGTCTTGGGAAGCTGTGGCATCAACCTGGGGTTATAAG----TTGTGAAGGCATAGGAGAAATCTAGATAATGAACATGCTAACCAGATTGTGTCCTCCAGAATTC-----CAGTGAAA---------------AGATTCAGAAG-AGGGAGACACAAAGATGGACA-TTTCATCCCTGCCCCTGATAGTTCTTGATATTT-TCTGGGTCTGTGCTGAGAACAAA
s HiC_scaffold_1 108389237 904 - 233722169 AACAGTAGTTTTTCTCTATCCTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGTGTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACT-TTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAG--CTCTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG-ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggaggaagagaggcagggCTGTGAATAGGATACTCACATTGTTATCATGATGTTCAATGTCCTTTGTGaggacataaaagaaaacaagactgc-aattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagcagtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAA

a score=14577
s chr3            98818031 449 + 160039680 TGTTCTTCCATTATCATTTTTCTATGGGCTCCATATTTTCTTCAGG-TACTGTACCTTTCA--------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAA--GAAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGG-ACACAAAGCATGTCCTTGGGAAACTTTCTGCATGGG--TGGAAATTTCCTGACACAGGTGTCAGTTACCTAGGCCTTCAAGAGAAATAATGGTAAGAAGACA-ATGGGAAGGACGCCTTTCTACAGAAGGAAGCATAAACACTCAAAA---------ATCAGA--ATGTAGTATTTTTAGGGAAGGAGGAAGCATCTATATCCATCCCATCCCTTTGTAGAAAATGTGTCTGAGCAGTAAGATTTCTG
s HiC_scaffold_1 108365755 466 - 233722169 tGTTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGCAGG-CCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGATGTAGAGGTCAGAGGTCATTCCTTGAAagga---acaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTTATATCTCA-----TTGCAGAGTAGGAATCTGAATAACTATGTTTGTG

a score=10835
s chr3            98818071 504 + 160039680 TTCAGGT-ACTGTACCTTTCA--------TCTAGGATAGTCTGCTTGGGTACAAGACCTGAGACATCAATGATGGCAGCAGTGTGGATGACAAGAAATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGCCTTTGTCTGCAGCTCTGTGGACACAAAGCATGTCCTTGGGAAACTTTCTGCATGGGTGGAAATTTCCTGACACAGG---TGTCAGTTACCTAGGCCTTCAAGAGAAATAATGGTAAGAAGACAATGGGAA-GGACGCCTTTCTACAGAAGGAAGCA--TAAACACTCAAAAATCAGAATGTAGTATTTTTA---GGGAAGGAGGAAGCATCTATATCCATCCCATCCCTTTGTAGAAAATGTGTCTGAGCAGTAAGATTTCTGCTTTGTACA---------------TAAACAGAGTTATGGGAAATTCCT-ACATTCAATAAAGCAACTGAAGAGGTGGTGG-CATTCACGTATAAGGAGGGAAAAGCATATTT
s HiC_scaffold_1 108301828 502 - 233722169 TTCAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAATTGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACAC----------AAGTTAACAAGTAGgtttcagttttctgagaaagGATACGTTAGTATTCTAGG------ATGGCCATAGTG--AAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGGACAGTTACATACAA-GATGAAAAATCAGACTT

a score=20580
s chr3            98819467 1009 + 160039680 AAACCACACTAGAAAAGGAACAAGCAACCATACCAAGTAGAAAAGACAGAGACCCTCTGCAGAGGCTGCAA--TCCAGCGT-------CCTTGCTAATGCTGCAGAGCCCTAAACAAGTATATACTGA---TATTACTT---TACAGGA----AGAACACAACTGTGAGATTGCCAGATGGGAAGAAAGACAGTGTCTGGAACTCCAGCAGCTGGGTTTGTGGCCACCATCTCTAGATAAGATACAAGACAGACTCTAGCCCC---ACAACTG--TGGTGTATTTTATGCTGTGTGATC-ATGAATCTTCCAGATGTGTTCAAGCATGGAGAAGCCTTAAGTTCCAAGTGCTCTCCATATTTGCTAGACAAG-ATCCCTTCCAATGCTCAGTCAACATTCCCCAT---AGTCACACAAACAGACTC-TGGCTCAATTACTGGAGAATTTCTTCTTGGTTTCTGACCTGAAGAC--TGTCCAAAGCTTTGACCTCCTGCAGTTCGTTCTCTTGCACCAACATCTTGATGATTCTCTGGCCAAGGAACCCTCCTGCTCCTGTCTCCAGGTAGCTCCATCCAGGCATGGTCAACACATGAAACAGATCACAGTGG-GAGCAGGTGTGATGTAGGGTGACCCTGAAGAGGGCTAGAAAAAAAAGGCCCAATGAAAACAGTTTTCCAGTAATCCTTTGGATTCACTCTA-CCCAATTTTTGCTAGCACACTGTGACCACTGCCACAGGA----GCTAAAATAAAATAAAA---TCTAACCTGTTAAATTGTTAAAAGTCAGATGGGAGAGTCTGGATGCTGGTCTCCTC-AGCCCTCAGATCAGAACTAGTGTTTTAATCTCTG-GTCTTCTGACTCATCAAATCTTGACAAATGCT--TGCTTGGTGGTCATTATTTACTCTTTTCTGTGGTCCTCTCCCTTCCAAATGATTGATAGATA--TTATGTCCTTTATTT--GTGTCAGAGGAATAAAAGTCAGCTTCAAGGCTACACTGTGATAAAGACT----GTTTTGTTTGGACATGTGCACTTCTTACAGTATT
s HiC_scaffold_1 108534578 1019 - 233722169 aagcaaaactaaagacaAGAAAAGGGCCCAGGGAAATCAAATGAGGCAAAGTTCCACTAC------TGCAACCTCCAGCTTAGTAGTACTTTGCCTGTTTTGCATAG---TAATCAC---TGAACTGAGCACATTAATTAGCTACAAGAGAGGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGA----------GAAGTTTACCAGCC-----TGTGTCCACCTTGTCTAG-TACTGAGCAGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGATTACTCCTGGTGAGTGTGGACACACAGAGCCTTAGGGCTCcaagttcttt-----ttcatttcaggAGCATCCCTCTC--TACTCACTCAGGCTTTCACAGTGGAGGCCCACACTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGTGACTGGGCACCCTGGAGAGAGCTAAAGAGAGAAGTTGT-TTAAGAACAGATGCACAGACACCTCATCTGCTCACTGTCTTCCAGTTTTTGCAAATTCCATGTCTCTACCATCACCGGGAGTCACTGGAAAAAAATGACAAGTTTTAACCTA--GAGCTGATAAAAGGCAGATGAAGGCACCTGGATGCTGGTTCCCTCAAGTTTCCAAGGCAGCACTGGAGCTTTATGTCCTGTGTCCTCTGACTCATCCCATC---ACTTGTACTTCTGTTTCATTCTCATTGCTCATTTTTTCTCCAGGATCCCTCCTCCCCAAA-GAATAATAACTAATTTACATCTTTTCCTTCCCTGGCAAGGCTGAAAACGTCAGCTTCAAGGCCA-GTTGCGATAAAGACTCTTGGCTTTAGTTCCACCAAGACACTCATTACTGTACT

a score=12156
s chr3            98819697 396 + 160039680 CAGACTCTAGCCCCACAACTGTGGT-----GTATTTTATGCTGTGTGATCATGAATCTTCCAGATGTGTTCAAGCATGGAGAAGCCTTAA--GTTCCAAGTGCTCTCCATATTTGCT--AGACAAGATCCCTTCCAATGCTCAGTCAACATTCCCCATAGTCACACAAACAGACTCTGGCTCAATTACTGGAGAATTTCTTCTTGGTTTCTGACCTGAAGA--CTGTCCAAAGCTTTGACCTCCTGCAGTTCGTTCTCTTGCACCAACATCTTGATGATTCTCTGGCCAAGGAACCCTCCTGCTCCTGTCTCCAGGTAGCTCCATCCAGGCATGGTCAACACATGAAACAGATCACAGTGGG-AGCAGGTGTGATGTAGGGTGACCCTGAAGAGGGCTAGAAAAAAAA
s HiC_scaffold_1 108449102 398 - 233722169 CAGAAACCAGTCTCTCAACAGCTGTTCAAGGTCTCTTATTCTGTACATCCTCAGTTCTTTCTGATGAGTGTGGACATGGGAGATCCCTCATGGCTCCA--TAGTTcctgtatttgttttaaaaagcactcCCTCCCACACTTGCTTAG-ACTGCAGAAAATGA-------AGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTAAAGAAAAAA

a score=13286
s chr3            98819697 412 + 160039680 CAGACTCTAGCCCCACAACTGTGGTGTA-----TTTTATGCTGTGTGATCATGAATCTTCCAGATGTGTTCAAGCATGGAGAAGCC-TTAAGTTCCAAGTGCTCTCCATATTTGCT--AGACAAGATCCCTTCCAATGCTCAGTCAACAT----------TCCCCATAGTCACACAAACAGACTCTGGCTCAATTACTGGAGAATTTCTTCTTGGTTTCTGACCTGAAGA--CTGTCCAAAGCTTTGACCTCCTGCAGTTCGTTCTCTTGCACCAACATCTTGATGATTCTCTGGCCAAGGAACCCTCCTGCTCCTGTCTCCAGGTAGCTCCATCCAGGCATGGTCAACACATGAAACAGATCACAGTG-GGAGCAGGTGTGATGTAGGGTGACCCTGAAGAGGGCT--AGAAAAAAAAGGCCCAATGAAAACAG
s HiC_scaffold_1 108410355 425 - 233722169 CAGAAACCAGTTTCCCAACAGCTGTGCAAGATCTCTTACCCTGTACATCCTCAGTTCTTTCTGATGAGTGTGGACATGGAATATCCATTATGATCCCA---CATTtcctgtttgttttaaaaaacatccTCTCCCACAGTTGGTTAGGCTGTAGAATGGATCCCTAATGTGAAAT-------TTCCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGATCAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAG

a score=9419
s chr3            98819716 386 + 160039680 TGTGGTGTATTTTATGCTGTGTGATC-ATGAATCTTCCAGATGTGTTCAAGCATGGAGA-AGCCTTAAGTTCCAAGTGCTCTCCATATTTGCTAGACAAGATCCCTTCCAATGCTCAGTCAACATTCCCCATAG--TCACACAAACAGACTCTG-GCTCAATTACTGGAGAATT----TCTTCTTGGTTTCTGACCTGAAGAC--TGTCCAAAGCTT-TGACCTCCTGCAGTTCGTTCTCTTGCACCAACATCTTGATGATTCTCTGGCCAAGGAACCCTCCTGCTCCTGTCTCCAGGTAGCTCCATCCAGGCATGGTC-AACACATGAAACAGATCACAGTGGGAGCAGGTGTGAT-GTAGGGTGACCCTGAAGAGGGCTAGAAAAAAAAGGCCCAATG
s HiC_scaffold_1 108302776 389 - 233722169 TGCAATGTCTTTTATACTGTGTCCTCTATGAGTTCTCTTGCTGAATGTGGACATGGGAAGAGTCTTTGGCTCCAAGTTTCCTTCGTG------AAAAGAAACCCCACTCTACATCTACTTAGGCTTTATGATGGGTCCACTCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAAGGCACA--AGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATG

a score=11716
s chr3            98819750 359 + 160039680 TCCAGATGTGTTCAAGCAT-GGAGAAGCCTTA-AGTTCCAAGTGCTCTCCATATTTGCTAGACAAGATCCCTTCCAA-----TGCTCAGTCAACATTCCCCATAGTCACACAAACAGACTCTGGCTCAATTACTGGAGAATTTCTTCTTGGTTTCTGACCTGAAGAC--TGTCCAAAGCTTTGACCTCCTGCAGTTCGTTCTCTTGCACCAACATCTTGATGATTCTCTGGCCAAGGAACCCTCCTGCTCCTGTCTCCAGGTAGCTCCATCCAGGCATGGTCAACACATGAAACAGATCACAGTGGG-AGCAGGTGTGATGTAGGGTGACCCTGAAGAGGGCTAGAAAAAAAA---GGCCCAATGAAAACAG
s HiC_scaffold_1 108393218 368 - 233722169 TTCTGATGAGTGTGGACATTGGAGATCCCTCATGGCTCCAAAT--TTCCTGTATTTGTTTAAAAAGCACTCCCTCACACACTTGCTTAGGCTGTAGAATGGATCCTAACATGAA--GTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaatagttcaaTAGGTACAG

a score=17307
s chr3            98821042 714 + 160039680 GGATCGAGAGCAGCTGCTGCAGCGGGCACGACTGGCGGAGCAGGCCTC----CGCCATG------------AAGGCGGTGACAGAGCTGAATGAACC--ACTATCTAATGAAGATCGAAATCTCCTCTCTGTGGCCTACAAGAA-TGTAGTTGGTGCCAGGCGATCTTCTTGGAGGGTTATTAGTAGCATTGAGCAGAAAGCCATGGCAGATGGGAATGAGAAGAAGCTGGAGAAAGTTAAAGCCTACCGGGAGAAGATTGAAAATTGAAAAGGAGCTGGAGACAGTTTGCAATGATGTCTTGGCTCTGCTTGACAAGTTCCTTATCAAGAACTGCAATGATTTTCAGTATGAGAGCAAGGTATTCTACCTGAAAATGAAGGGCGATTACTACCGCTACCTGGCAGAGGTGGCTTCTGGGGAGAA---GAAAAACAGTGTGGTTGAAGCTTCTGAGGCCGCGTATAAGG------AAGCCTTCGAAATCAGCAAAGAGCACATGCAGCCAACACACCCCATCCGGCTTGGCCTGGCCCTCAATTTTTCTGTGTTCTACTATGAGACCCAGAATGCACCAGAGCAAGCCTGCCTCTTAGCCAAACAAGCCTTCGATGATGCTATAGCTGAACTGGACACATTAAACGAGGATTCCTATAAGGACTCCACTCTCATCATGCAGTTGCTGCGAGACAACCTCACCCTCTGGACG--AGC-GACCAGCAGGATGAA---GAAGCAGGAGAAG
s HiC_scaffold_1 165852070 712 - 233722169 GGATAAAAATGAGCTGGTGCACATAGCCAAACTGGCCAAGCAGGCCATATAATGCCATGGCAGCCCATGTGAAGTCTGTATCTGAGC--AAGGCACTGGATTATCTAATGAGGAGAGGAATCT--TCTCTGTGTTCTTCAAAAAATGTTACAGGAGCCTATAGTTCATCTTGGAAGGTTGTCTCAAGCACTGAGCAAAAG---ATGGAAGGTG---CTGAGACAGGGCAGCAGATGGCTCaagaacacagagagaaaactgaggct-------gagCTAAGGCTTACCTGCAACAATGTACTATCTCTTTTGGAAAAGTTCTTGATC------CCCAGTGCTTCACAAGCAGAGAGca--gcattttatttgaaaacgAAAGGAGACTACTACTGTTAT-TGTCTGGGGTTGCTGCTGGTGATGACCAGAAAGGGATTGTGGG----------GCAGTCACAACAAAGATACCAAAAGTTTTTGAAATCAGGATAAAGGAAATGCAACCAATGCATCCTATCAGATTGAGTCTGACCCTCAACTACTCTATGTTTTATTATGAGATTCTGAACTCTCCAGTTAAAACCCATTCTCTAGCAAATGTAGCTTTTGATGAAGCCATTGTTGAGCTTGATACATTTAGTGAGGAGTCATACAAGGACTGTACACTAATAACACAATTACTGAGAGACAACTAGACATTGTGGACATCAGCTTCCCAAGAAgatgaagctgaagcaggaggag

a score=18824
s chr3            98842764 891 + 160039680 TGCTATCAGAAAGTGTGTGAGCACAGCAAATGTTTCAAAGCAGGAGACCCCACT---ACCTCTTCTTTCATTATCATTTTCCTATGGGCTCCATATTTTCCTCAGG-TACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTC-CTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAG-GAGGCCTTTCTTCTGAAAGAA-----GCATAAACACTCAAAAA--TCAGAATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCATATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGCTTTATACACAAACAGATT-------TATGGGAAATTCCTACA--TTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGA-ATAGGACTCAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGGGTGATGGAGTTCTGT-CTTGGGAAGCTATAATATCAATCCGAGATTACAAA-------CTGTGAAGGCATTGGGGAAATCTGAGCAAGGAACATGCTAACAAGCTTGTGTTCTATGAACTTCCAGTGAGG-------AGGATTCAG-------------AAGAGGGAGACACAAAGATG--GACATTCAGCCCTGCCCCTGATAGGTCTTGATACT---TGGGTCTGTGCTGAGAACAAATGAAGAGTTAGCTGAATT
s HiC_scaffold_1 108531350 934 - 233722169 TGTTAGCTGAGAGTG-GTAAGCAAAG---ACTCTTCAGGGCTTCACTCTCCCTTCTCATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATAAGT-CGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTGACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTG--TCATGAACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAG-ATAGTTTGATACAGAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAG----GCAGGCCTGTGAATAGGACACT-TACCTTGGCGCCAGGATGTCCAATATACTGTTGTGAGGATATAAGAGAAAACAGGGCTA-CAATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGAGCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCA-----GAAAAATCAGTTAAGCT

a score=17108
s chr3            98842782 655 + 160039680 GAGCACAGCAAATGTTTCAAAGCAGGAGACCCCACTACCTCTTCTTTCATTATCAT---------TTTCCTATGGGCTCCATATTTTCCTCAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATA--TTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAGGAGGCCTTTCTTCTGAAAGAAGCATAA--------ACACTCAAAAATCAGAATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCATATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGCTTTATACACAAACA---------GATTTATGGGAAATTCC--TACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGAA-TAGGACTCAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGGGTGATGG
s HiC_scaffold_1 108444638 675 - 233722169 GAACTCTGCAGGTGTTCCACAG----GGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCATGTT----------GCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGAT-GGACAGGTAATTTTACTGATAA--GTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGG

a score=17284
s chr3            98842782 649 + 160039680 GAGCACAGCAAATGTTTCAAAGCAGGAGACCCCACTACCTCTTCTT-------TCATTATCATTTTCCTATGGGCTCCATATTTTCCTCAGG-TACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGGACACAAA--GCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGT---TACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAG-GAGGCCTTTCTTCTG-----AAAGAAGCATAAACACTCAAAAAT--CAGAATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCATATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGCT-----TTATACACAAACA--------GATTTATGGGAAATTC--CTACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGAA-TAGGACTCAATTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA-----AGGAGAAACAGGG
s HiC_scaffold_1 108405592 679 - 233722169 GAACTCAGCAGGTGCTCTACAG--GGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGTTGCAACCG-ATTCTTTTGCAGAACATGAATCTGAGTGGTA-------ATCTCTGATGAGTATCATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgag

a score=11096
s chr3            98842783 597 + 160039680 AGCACAGCAAATGTTTCAAAGCAGGAGACCCCACTACCTCTTCTTTCATTAT--CATTTTCCTATGGGCTCCATATTTTCCTCAGGT-ACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGT-AAGAAGACAATAAGGAGGAGGCCTTTCTTCTGAAAGAAGCA---TAAACACTCAAAAATCAGAATGTAGCAGTTATC---AGGAATGAGGAAGCACCAATATCCACCATATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGCTTTATACA----------CAAACAGATTTATGGGAAATTCCT-ACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTA-AGGAGGGAGAATAGGACT
s HiC_scaffold_1 108301753 576 - 233722169 AGCCCAACATCAGTTCCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTCCTTTG-----CAACTGGCTTTCAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttcag-------------ttttctgagaaa------gGATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGG-ACAGTTACATACAAGATGAAAAATCAGACT

a score=11188
s chr3            98842816 314 + 160039680 CTACCTCTTCTTTCATTATCATTTTCCTATGGGCTCCATATTTTCCTC-AGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCA
s HiC_scaffold_1 108374430 302 - 233722169 CTACTTCACCTACCATCAT--TTTCCCTACCTGTTGCATCTCATGCTCCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT---------GGTGGGAACTTTTTAAA----GTGATGGTTATCTTTGACTTCAAGGATA

a score=14901
s chr3            98842816 821 + 160039680 CTACCTCTTCTTT----CATTATCATTTTCCTATGGGCTCCATATT-TTCCTCAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGT---TACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAGGAGGCCTTTCTTCTGAAAGAAGC------ATAAACACTCAAAAATCAGA-ATGTAGCAGTTA---TCAGGAATGAGGAAGCACCAATATCCA--CCATATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGCTTTATACACAAACA--------GATTTATGGGAAATTCC--TACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGAATAGGACTCAATT--GATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGGGTGATGGAGTTCTGTCTTGGGAAGCTATAATATCAATCCGAGATTACAAA----CTGTGAAGGCATTGGGGAAATCTGAGCAAGGAACATGCTAACAAGCTTGTGT---------TCTATGAAC------------TTCCAGTGAGGAGGATTCAGAAGAGGGAGACACAAAGATG--GACATTCAGCCCTGCCCCTGATAGGTCTTGATACTTG----GGTCTGTGCTGAGAACAAA
s HiC_scaffold_1 108389257 884 - 233722169 CTTTCTCATCTCTATACCATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCTCTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG-ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggagga--agagaggcagggCTGTGAATAGGATACTCACATTGTTATCATGATGTTCAATGTCCTTTGTGaggacataaaagaaaac-aagactgcaattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagc-agtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAA

a score=16146
s chr3            98842823 446 + 160039680 TTCTTTCATTATCATTTTCCTATGGGCTCCATATTTTCCTCAGG-TACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCTTGGGTACAAGACCTGAGACATCAATGACAGCAGTAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG-ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGAC-GAATATTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACA-ATAAGGAGGAGGCCTTTCTTCTGAAAGAAGCATAAACACTCAAA-------AATCAGA--ATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCATATCCCTTTGTACAAAATGCATCTGAGCA
s HiC_scaffold_1 108365757 452 - 233722169 TTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGCAGG-CCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGATGTAGAGGTCAGAGGTCATTCCT-TGAAaggaacaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTT-----ATATCTCATTGCAGAGTAGGAATCTGAATA

a score=36334
s chr3            98852201 1255 + 160039680 TACAATATTTATTGCTGTTTTTGTTTTGCTTCAGAAAGCAACGGGATTTTACCAAAGGCAAGATATGATTTAGGACTTGA-AGGGGGAAATAAAAGCAATACTAAG--TTCTAAGTGAAAGTAAATTGTAATTGCTGAAGCC----------------TAAGAACTGAGAC---TCAGCTATGTTTGTCTCTGAGCAGGGGCTTAGGGAAGCAAGTTTGTGAGTGGGTTAGTGACTGGCAAGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTG-GCTTGTGCCTCTGT-ACTTGCT---------------ACAGGACCTTATAACTCCCAGAGCCATGTACCTGCCCTTTTTCCATCACTGGCACTTTGTGTCCAATATCTCCCTGTGCTGTTCCACTATTGTCCCTATCCACTCTGAGGTTTTCTGCTTTGCTTCCTCCCAGTTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAAGAAAAAGTGAACGTGCTATTTGACAGTGTGATCAAGTGGCGGTTAAAGAGAGGTCTATACCTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGCATTAGGGCGGAGC--CCCCATTCCTTACTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTGTCCTTGGATGCTTGTAGACTTCTTGGGGTCTCGAAGGCCCCTGGCTGCCAGAATGTGTGCCCAGGCCACATTTTCCACATATACTGGGTTGGCTATGGAGAATTTGCCAGTAACACACAGAATACCCTTATTTTTGAGGGCCCTAATTATTGCATTAAAAATGAATGGACTTCTCTCCCCATAAATGTACATGGGTCTTAAGGCACAAGTATTCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGTACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTGCTTTCATGATTCTGTTCCTCGTGGCCATTCAGGACGATCTTCTTGTACGAGTTGGGCCCTGCAACATCAACTG-AGCTGCAGAAGATGAAGGCTGGCACACTTGCTTGAACACAGGCCTCCAATAGGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCAGTGTTGGAAAATAGAATAAGGAGTTGAGTTGCTTTCCTGTTATTTTTACCCTATTCCCAGTAG
s HiC_scaffold_1 108298025 1224 - 233722169 TAaagcatttattg---tttttcctaAGCTTTATGCAA-AATGAgagtttttcaaagaaaagaaacaatttaacaaTGGAGAGGAGGGAATGGAATTAATAGGAAAGCTTCTCACTATAAGAGGCCATAAATAATTCAAACCAGCAAAGGGGAGAAAGCAGAAACAGATACAAAGCAGCT-TGTTTTTC-CTCATTGGATGATCAGGCCAGAAAACTTCTGGCTGTGTCAGTGAGCAGGAAAGCTCATGGTGGC----------------------CACTGCTTGAAAAGCAGTGAGCAGAGCCGGTGTATCTACCTTGGTCACTTTCTCCAGTTAGCAGAGAGACAGCTTCAGACATCACTCATGGCCACATTTTTGTGATGGTCACATCCCTG--AGTCTCTCCTCTGAGTCCCCTTGTGCTG----------------ATCCACTCTTTAATATTCAGTTTGGCTTCCTCCCAGCTGAAGCATGGCTCATGTCCAAGGTCTTGATTAACTTTCTTGTAGGAGAAGGTGAACACACTATTTAATAATGCCAATAAGTGGCAGTTAAAGGAGGgatgatatttttaaagtggGTCCAGTAGAAAGTTCATCATATCCAGCAGGAAAGCAAGCCAGTACAGTAGAGAAAGAGGGTGATTCAGAGTGGAATCAAAGCAGAGAGGCTCCATTCTTTGCTCAGGGTATAATGGAAATTTTCATAGCTTTGGTGAGGTGTATCATCTGTGATGTAGTAGAACTGTCTACCAATGTTTGGGGCATTATTAGGGTCCCCCAAG---------GCCAAAATGTGGACCCAGGCTGCATTGCCAACATAAATTGGGTTGGCAATAGAGAATTTGGCTATACTTTTCAGCCTACA-TTGTTTTTAAGGGCCATTTTCATTACAAAAAATAAGAATGGGCTTCCTTCTCCATAGCTGTAGGTGGGCCTCAAGGCTCAAGTATACAGGGTACCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcTTTTTGCTGT-TGGGTATGAAGCAGACCATGTGACTCTGTGATGCTCGTCCTTGTGGGCATTCTGGATGATTTCTATGAAGTAGCTGGGCTCAGCTACCTCGACTGGAGCTG-ATATAGTTATGATTAGTACACTGGCTTGCACACAGGCCTCCAACAGAAACTGAGTACCTGTCCATGAGGAGCATGTGGTCAGTGTCA------GGAAATAACA---------GAGTCATTTCAGGTTCATTTTCACTTCCTCCCCAGCGG

a score=39232
s chr3            98852419  972 + 160039680 AGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTG-GCTTGTGCCTCTGT-ACTTGCTACAGGACCTTATAA-----------------------------CTCCCAGAGCCATGTACCTGCCCTTTTTCCATCACTGGCACTTTGTGTCCAATATCTCCCTGTGCTGTTCCACTATTGTCCCTATCCACTCTGAGGTTTTCTGCTTTGCTTCCTCCCAGTTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAAGAAAAAGTGAACGTGCTATTTGACAGTGTGATCAAGTGGCGGTTAAAGAGAGGTCTATACCTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGCATTAGGGCGGAGCCCCCATTCCTTACTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTGTCCTTGGATGCTTGTAGACTTCTTGGGGTCTCGAAGGCCCCTGGCTGCCAGAATGTGTGCCCAGGCCACATTTTCCACATATACTGGGTTGGCTATGGAGAATTTGCCAGTAACACACAGAATACCCTTATTTTTGAGGGCCCTAATTATTGCATTAAAAATGAATGGACTTCTCTCCCCATAAATGTACATGGGTCTTAAGGCACAAGTATTCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGTACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTGCTTTCATGAT---TCTGTTCCTCGTGGCCATTCAGGACGATCTTCTTGTACGAGTTGGGCCCTGCAACATCAACTGAGCTGCAGAAGATGAAGGCTGGCACACTTGCTTGAACACAGGCCTCCAATAGGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGT
s HiC_scaffold_1 108360826 1000 - 233722169 AGGCATCTGGTGGCCTTTGAAAGACAGTAAGTTG-CCATTGTGTCAGAGGGAGAGTGTATGACTTGTACTCCTGCCTTTGTCAAGTTCtgcaggaagtcagaaggaggaaGTAGGTAAATAGCTCCAGGCATCACCCAGAACCACATCCTTGTCATGACCACATTACTGAGTCTTTGTCTTCGAAGTCCCCTTGTGCTGCTGTATTAGTGAACCAATCTACTGCCCAGTTTTCTGTTTGGCTTTCTTCCAGCTGAAGAGTAGTTCATTCCATAGATTGGATTGAGTTTTCTTATAGGAAACTGTGAACATGGCATTTGACAATGTCATTAAGTGGCAGGTGAAGGGAGGTTGATATTTGTAAATGGGATTCAATAGGAAACTCACCATTTccagaaagaaagcaagccagGGCATTAGATAGAAAAGAAGGCTCAGGGTTTAATCAAAGGATACACCCCACTCTTTGCTCAGGGTGTAATGCAAATTATCATAGTTTTGATGAGGCATATCATCTGTGATATAGTAGAATCAACCCCCAATGTTTGGGGCCTTGTTGGGGTCCCTGAAGGCCCTGGTGGTCAGAATGTGGGCCCAGACTGCATTGTCAACATAGACTGGGTTGACTATAGAAAATTTGGCTATACTTTTTATGAGCTCACTGTTTTTGAGGGCTATATTCATCATAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGGGAGTCTCAAGGCACAAGTATACAGCATACCACTATTTCTCAGCTTGCAGCCATTAGCTTTCAGCATAACCTGCTCAGCCAGCTTTTTGCTG--TGAGTATGGAGTAGACCAGGTGCTTTCATGATGGGTCGG--CCTCATGAGCAATCTGGATGATCTCGTTGGAGGAGTTGGGCCCTGCTACTTCAGTTGTGCTTGTGTAGATGAAGACTGGCATGCTGGCTTGCACATAGGCCTACAACAGGAGCTGAGTACCTACCCATGGA-AGCACATGGCCTGTAT

a score=42472
s chr3            98852419  976 + 160039680 AGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAG-GAGACAGCAGGACCTG-GCTTGTGCCTCTGTACTTGCTACAG-------------------GACCTTATAA----------CTCCCAGAGCCATGTACCTGCCCTTTTTCCATCACTGGCACTTTGTGTCCAATATCTCCCTGTGCTGTTCCACTATTGTCCCTATCCACTCTGAGGTTTTCTGCTTTGCTTCCTCCCAGTTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAAGAAAAAGTGAACGTGCTATTTGACAGTGTGATCAAGTGGCGGTTAAAGAGAGGTCTATACCTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGCATTAGGGCGGAGCCCCCATTCCTTACTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTGTCCTTGGATGCTTGTAGACTTCTTGGGGTCTCGAAGGCCCCTGGCTGCCAGAATGTGTGCCCAGGCCACATTTTCCACATATACTGGGTTGGCTATGGAGAATTTGCCAGTAACACACAGAATACCCTTA-TTTTTGAGGGCCCTAATTATTGCATTAAAAATGAATGGACTTCTCTCCCCATAAATGTACATGGGTCTTAAGGCACAAGTATTCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGTACTG-CCTTCTCAG-CCATCTTTTTGCTGTATGGGTATGGATCAG-ACCATGTGCTTTCATGATTCTGTTCCTCGTGGCCATTCAGGACGATCTTCTTGTACGAGTTGGGCCCTGCAACATCAACTGAGCTGCAGAAGATGAAGGCTGGCACACTTGCTTGAACACAGGCCTCCAATAGGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCAGT
s HiC_scaffold_1 108440311 1007 - 233722169 AGGCATCTTGTATGCTTATGGAGACAATAAGTTG-CCATTGTGT-TACAGTGAGACTTTAGGATCTGTGCTTGTGCCTTTG-ACAAGTTATGGAGGAAGCCAGATTGAAGAAGAACATAGAAGCAACACGTGTCACAAGAACCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTGCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCCGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCTTTCTCCATAGATGAATGTGGGCCTCAAGGCACAGGTATACAGCGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCAGCACAGCCCTTCTCAGCCCAGCCTTTTGCTGCATGGGTATGGAGCAGAACCATATGCTTTCATGATGGTCATCCTCATGGGCGGCCTGGATGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCTATTGAGCTTGTGTAGATGAAGATTGACACACTGGCTTGCACACAGGCTTCCAACAGCAGCTGCGTACCT-GCAAGTGGGAACACAGGATCAGCATCAAT

a score=44878
s chr3            98852419  995 + 160039680 AGGCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGG-AGACAGCAGGACCTG-GCTTGTGCCTCTG----------------TACTTGCTACAGGACCTTATAA-------------CTCCCAGAGCCATGTACCTGCCCTTTTTCCATCACTGGCACTTTGTGTCCAATATCTCCCTGTGCTGTTCCACTATTGTCCCTATCCACTCTGAGGTTTTCTGCTTTGCTTCCTCCCAGTTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAAGAAAAAGTGAACGTGCTATTTGACAGTGTGATCAAGTGGCGGTTAAAGAGAGGTCTATACCTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGCATTAGGGCGGAGCCCCCATTCCTTACTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTGTCCTTGGATGCTTGTAGACTTCTTGGGGTCTCGAAGGCCCCTGGCTGCCAGAATGTGTGCCCAGGCCACATTTTCCACATATACTGGGTTGGCTATGGAGAATTTGCCAGTAACACACAGAATACCCTTATTTTTGAGGGCCCTAATTATTGCATTAAAAATGAATGGACTTCTCTCCCCATAAATGTACATGGGTCTTAAGGCACAAGTATTCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGTACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTGCTTTCATGATTCTGTTCCTCGTGGCCATTCAGGACGATCTTCTTGTACGAGTTGGGCCCTGCAACATCAACTGAGCTGCAGAAGATGAAGGCTGGCACACTTGCTTGAACACAGGCCTCCAATAGGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCAGTGTTGGAAAATAGAATAAGG
s HiC_scaffold_1 108401957 1018 - 233722169 AGGCATTTTGTAGCCTTATGAAGACAATAAGTTG-CCATGGTGTC-ACAGTCAGGCTGTAGGATCTGCGCTTGTGCCTTTGACAAGTTTTGGAGGAATCCAGGTTGAAGAAGCAGATAAAAGCATCAGGGGTCACACAGAGCCACATCCTTATGATGGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATATCCTAGGTGGCGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCTAGCAGGAAAGCAAGCCAGTACATTAGAGACAAAGGGATGCTTGGGCCAGAATCAAGGCAGAAGCCCCATTTTTTGCTCAGATTGTAACTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAACTGTCCTTGAATATCTGAGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGGGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATGCCATTGTTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGGGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCAGGTGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTGGCACGCTGGCTTGTACACAGGCCTCCAACAGGAACTCGGTACCTGCACGTGGTGAGCA------CAGGGTCAGCATTCATAAATAAACCAAAG

a score=46508
s chr3            98852421  993 + 160039680 GCTTCTGGTGACTTGAGAAAGATACCAAGTTGGTCTCTGTGTCTACAGGAGACAGCAGGACCTGG-CTTGTGCCTCTGT-ACTTGCT--ACAGGACCTTAT---------------AACTCCCAG-----------AGCCATGTACCTGCCCTTTTTCCATCACTGGCACTTTGTGTCCAATATCTCCCTGTGCTGTTCCACTATTGTCCCTATCCACTCTGAGGTTTTCTGCTTTGCTTCCTCCCAGTTGACAAGTGGCTCATAGCCCAGATCTCGCTGAGCTTTCTTGTAAGAAAAAGTGAACGTGCTATTTGACAGTGTGATCAAGTGGCGGTTAAAGAGAGGTCTATACCTGTAGACTGGACGTAGCAGGAAGCTCACAGTTTCCAGCAGGAAGGCAAGCCAGTAGAGCAGGGGCAGAGGAAGGCTCCAGCTGGCATTAGGGCGGAGCCCCCATTCCTTACTCAGGGTGTAATTTAAATCATCATAGCTTTGGTGAGGGGTGTCATCTGAGATGTAGTAGAACTGTCCTTGGATGCTTGTAGACTTCTTGGGGTCTCGAAGGCCCCTGGCTGCCAGAATGTGTGCCCAGGCCACATTTTCCACATATACTGGGTTGGCTATGGAGAATTTGCCAGTAACACACAGAATACCCTTATTTTTGAGGGCCCTAATTATTGCATTAAAAATGAATGGACTTCTCTCCCCATAAATGTACATGGGTCTTAAGGCACAAGTATTCAAAGTGCCACCATTTTTCAGCATGCTCCCATTGGCTGCCAGTACTGCCTTCTCAGCCATCTTTTTGCTGTATGGGTATGGATCAGACCATGTGCTTTCATGATTCTGTTCCTCGTGGCCATTCAGGACGATCTTCTTGTACGAGTTGGGCCCTGCAACATCAACTGAGCTGCAGAAGATGAAGGCTGGCACACTTGCTTGAACACAGGCCTCCAATAGGTTCTGGGTACCTAATCACAGACAACACACTGTCAGTGTCAGTGTTGGAAAATAGAATAAGG
s HiC_scaffold_1 108528337 1014 - 233722169 GCATCTTGTGGCCTTAGGAAGATGGTAAGTTGCGAT-TGTGTC-AGAGGAGCCTGTAGGACTTGGGCTTGTTCCTTTGTCACTTTCTGAACAAAGACATATGGAGGAAGTAAATTAAACTTCCAGGCATCACCCTAAATCACATCGCTATCATAGTCACATCACTGAGTCTTTGTCTTCAAAGTCCCCTTGTGCTGCTGCACTAGTGAACCAACCCACTCCCCTGTTTTCTGCTTGGCTTCCTCCCAGCTGAAGAGTGGCTCATACCCTAGGTGCTGTTGAGCTTTCTTATAGGAGACTGTGAACACACTATTTGACAGGGTCAGTAAGTGGCGGGTGAAGGGCGGTTGAAAATTATAAATTGGTCTCAACAGAAAGCTCACCATTTCCAGCAGGAAAGCAAGCCAGTACATTAGAGACAGAGGGATGCTTGGGCCAGAATCAAGGCAGAGGCCCCATTCTTTGCTCAGATTGTAATTGAGGTTATCATAACTTTGGTGAGGTGTGTCATCTGAGACATAATAGAATTGTCCTTGAATATCTGGGGCCTTGTTAGAGTCCCTGAGGGCTCTGGAGGCCATAATGTGAGCCCAGGCCACATTACCAACATAGACTGGATTGGCTACAGAGAATTTGCCTGTGCTTTTCAGTATACCATTATTTTTGAGGGCTTTATTCATCTCAGAAGATAAGAATGGGCTTCCTTCTCCATAGATGTACGTGGGCCTCAAAGCACAAGTATACAGGGTGCCACCATTTCTCAGTGGGCAGCCATTAGCTTTCagcacagccttctcagccagcCTTTTGCTGCATGGGTATGGAGCAGACCATATGCTTTCATGATGGTTGTACTCATTGGTGTTCTGGACGATCTCCTTGTAGGAGTTGGGCCCAGCTACTTCGATTGTGCTTGTGTAGATGAAGATTCGCACGCTGGCTTGCACACAGGCCTCCAACAGGAGCTGGGTACCTGCACGTGGG-AACACAGAGTCAGCATCA------GAAAATAAGCCAAAG

a score=11673
s chr3            98855854 432 + 160039680 TTTTACAGAAATATTGAGACCGAGGGCCATG----CTATCAGAAAGTAT--GTGAGCACA-GCAAATGTTTCA--------AAGCAGGAGACCCCACCACCT--------CTTCTTTCATTATCATTTTCCTA------TGGGCTCCATACTTTCCCAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGC-AGTCATGGTA----------------AGAAGACAATAAGGAGGAGGCTTTTCTTC
s HiC_scaffold_1 108374323 462 - 233722169 TTTCACATAAACACAAAGAATAACAGCCCTGAGTTCTGTCAGCAGGGAGTGGTGAGCAAATGCACTTGGACCAGAACCCAGAAGCAGTGGAGCTTCTCCTCTTTTTGCTACTTCACCTACCATCATTTTCCCTACCTGTTGCATCTCATGCT---CCAGCTATTCTGCCTTTCAGGTTGGCATCAATGATGGTCTTTCTGTGAATGGCACCTGAGACaccaaggagaatgagaacatgGATGATAATTAAGATGCCCTGGCAGGTCGCCTTCAGGCAGGGGGCAGCCAGAATGTCTCATTCTATCATTTTTACCTTGGTCTTTGTCTGAAACTCTGTGGTAACACAGGACAGATTATCAGGAAACTT---------GGTGGGAACTTTTTAAA----GTGATGGTTATCTTTGACTTCAAGGATAAGTCacattgttttgtcttgctttccaGAATATAATACGAAGGA--CTTCTATTC

a score=17171
s chr3            98855897 652 + 160039680 ATGTGAGCACAGCAAATGTTTCAAAGCAGGAGACCCCACCACCTCTTCTT-------TCATTATCATTTTCCTATGGGCTCCATACT-TTCCCAGG-TACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGGACACAAA--GCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGT---TACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGG----AGGAGGCTTTTCTTCTGAA--AGAAGCATAAACACTCAAAAAT--CAGAATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCACATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCT-----GTTTTATACACAAACA--------GATTTATGGGAAATTC--CTACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGAA-TAGGACTCAGTTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA-----AGGAGAAACAGGG
s HiC_scaffold_1 108405588 683 - 233722169 ATAAGAACTCAGCAGGTGCTCTACAG--GGggacttctctttcccttctcatcCCTCTTGCCATTTTTTTCCCAGCAGGTGCATGTTGCTCATAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGGAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGGTCTGAGCGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCATGTTCAGCTCTGTGGAAAAAGAATACAGGTCCTTAGGAAGTTTTCTATATGgactaaaaattttaacaataagGTGCCAGTTGGTAAGTAGATTTTCAAGAATATTCCTAGCAGGGAGATATGGAGGAATTAGGACACTCcatggataaaacaaaataataagggcATAGAAATCACAGTGTGTAGCATTTATTGGTAACAATCAAACAACTGTTGCAACCG-ATTCTTTTGCAGAACATGAATCTGAGTGGTA-------ATCTCTGATGAGTATCATGAACAAAAATTGTTTGTGAGTCCAGAGAAGTTTTATCAAATTCATCAAGG--AGTGGGAAAGTTGTAG-ATAGTTGGATAAAGAAGCCAACTTAGCATTTAATTGTGTAGACAATGAGTAATTCTTCAGGGAATTTGAACtgcaggagaaactgag

a score=17287
s chr3            98855901 654 + 160039680 GAGCACAGCAAATGTTTCAAAGCAGGAGACCCCACCACCTCTTCTTTCATTATCAT---------TTTCCTATGGGCTCCATACTTTCCCAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATA--TTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAGGAGGCTTTTCTTCTGAAAGAAGCATAA--------ACACTCAAAAATCAGAATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCACATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGTTTTATACACAAACA---------GATTTATGGGAAATTCC--TACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGAA-TAGGACTCAGTTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGGGTGATGG
s HiC_scaffold_1 108444638 675 - 233722169 GAACTCTGCAGGTGTTCCACAG----GGGTTCTTCTCTGTCCTTTCTCATCTCCATGCTATTCCCCTTCCCATCAGCTGCAT---------GTTGCTCTACCTTTCAGGTTGACTTCCATGATGATCTGTGCAGGAAGGACACCAGATACATCAATGACAGCAGCGGTATGAATAACAACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGTGTCCAGAATGTCTCCTTCTACTATTGTCACCTTTGTCTTCGTGTTCAGCTCTGTAGAAAAACAATGCGGGTCATTATGAAGCTTTCTGGAT-GGACAGGTAATTTTACTGATAA--GTCGAAAGTGTATAAATTTTCAAGAATATTCATAGCAGAGAGATATTCAGAAGTGAGTCCACTCTATGgaggaaacaaaataatgaggGCATAGAAACCACAGTGTGTAGCATTTAATGGCAAGAATAAAACAACTGT-TGTGTTTGATTCTGTTGCAGAACATGAATCTGAGCAGTAAGCTCCAAGGAGTGTCAtgaacaaaaagaatttttaatgacTTCTGGGAAGATTCGTCATACTCATCAAGGAGAGTGGTGAAGTTGAAG-ATAGTCGCATAAAGAGGCCAAATTAGCATTTAATTGTGTAGACAATGAGG-AATCATTTAGGGATTTGGAACTACAGGAGGAACAGAGCCAGGG

a score=11317
s chr3            98855902 596 + 160039680 AGCACAGCAAATGTTTCAAAGCAGGAGACCCCACCACCTCTTCTTTCATTAT--CATTTTCCTATGGGCTCCATACTTTCCCAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGT-AAGAAGACAATAAGGAGGAGGCTTTTCTTCTGAAAGAAGCA---TAAACACTCAAAAATCAGAATGTAGCAGTTATC---AGGAATGAGGAAGCACCAATATCCACCACATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGTTTTATACA----------CAAACAGATTTATGGGAAATTCCT-ACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTA-AGGAGGGAGAATAGGACT
s HiC_scaffold_1 108301753 576 - 233722169 AGCCCAACATCAGTTCCATGGTGgggcttctctttccctctccatcTGTTGTGTTGTCTTCCTTTGCAAC---TGGCTTTCAGGTTACGCTACCTTTCAGGCTGATGTCCATGATGGTCTGTGTG------------------TCAATGCCAGCAGCATTATGGATGACAGATGAAAT--TGTGTCAGGCTTTCCTCAGACACTAGGGATTCAGAATGTCTCCCTCCAGAAATGTCACCTTGGTCATTGTCTGAAGCTCTACGGGTATGTGACACAAGTTAACAAGTAGgtttcag-------------ttttctgagaaa------gGATACGTTAGTATTCTAGGATGGCCATAGTGAAGGAGTTGTTATGAAGGGACCACATTCCATGGAAGGAACAAGTTAAAGGCACAGAAGTCACAGTGTGTCACTTTTactggaaaataaacaaacaactcttTCTTCCCCATGCAGTTCCAGAAAATAAATCTGAGGAAGAAGCTCTCATGTGTGTGTGGAATAGAAAGACTGTTAAAGACAGTTCTGAGAAGTTTTTCAAACTCATTAAGGAGAGTGGAGAGGTTGTGG-ACAGTTACATACAAGATGAAAAATCAGACT

a score=15557
s chr3            98855936 451 + 160039680 CACCTCTTCTTTCATTATCATTTTCCTATGGGCTCCA--TACTTTCCCAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG-ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGAC-GAATATTTCCTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACA-ATAAGGAGGAGGCTTTTCTTCTGAAAGAAGCATAAACACTCAAA-------AATCAGA--ATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCACATCCCTTTGTACAAAATGCATCTGAGCA
s HiC_scaffold_1 108365751 458 - 233722169 catgtGTTCTTCCATTGTCCTATTCCTGCCTGCTGTAGCTCACCTTCAGGGTACTTTACCTTTCAAGTTGATGTCCATGATGGTCTGCCTGTGAGC-AGGCCTGACACATCAACAACAGCAGCTGTGTGAATGACAACTGAGATGCCCTGCCAAGCTGTCTTCAGACACTAGGCATCCAGAATATGTCACTCAAGCACAtttactttgttctttgtttacaACTCTGTGGAACACAGGGCACATCGCTGGGAATCTTTCTGGATGGGGTGGGAAGTTTCCTCAAAAGAGTGACAATTATCTAGTTCTTTTAGGATAGTTATAGTAGGGAGATGTAGAGGTCAGAGGTCATTCCT-TGAAaggaacaaatataaaaaaagtaCATTGATCAGAATATGTGATAATTATGTGGATGGATCAAACAGCTATTT-----ATATCTCATTGCAGAGTAGGAATCTGAATA

a score=18698
s chr3            98855936 837 + 160039680 CACCTCTTCTTTCATTATCATTTTCCTATGGGCTCCATACT-TTCCCAGG-TACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTC-CTGACACATGTGTCAGTTACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAG-GAGGCTTTTCTTCTGAAAGAA-----GCATAAACACTCAAAAA--TCAGAATGTAGCAGTTATCAGGAATGAGGAAGCACCAATATCCACCACATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGTTTTATACACAAACA-----GATTTATGGGAAATTCCTACA--TTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGA-ATAGGACTCAGTTG-ATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGGGTGATGGAGTTCTGT-CTTGGGAAGCTATAATATCAATCCGAGATTACAAA-------CTGTGAAGGCATTGGGGAAATCTGAGCAAGGAACATGCTAACAAGCTTGTGTCCTATGAACTTCCAGTGAGG-------AGGATTCAG-------------AAGAGGGAGACACAAAGATG--GACATTCAGCCCTGCCCCTGATAGGTCTTGACACT---TGGGTCTGTGCTGAGAACAAATGAAGAGTTAGCTGAATT
s HiC_scaffold_1 108531402 882 - 233722169 CATCTCTCCTACCATTTTC-TTTTCCCACCAGGTGCGTGTTGCTCACAGGCTGCTCTACCTTTCAGGTTGACTTCCATGATGGTCTGTGCAGGAAGCACACCAGATATGTCAATAACAGCAGCGGTGTGAATGACGACTGAGATGCCCTGGCAGGCTCTCCTCAGGCTCTGAGCATCCAGAATGTCTCCTTCAATTATTGTAACCTTTGTCTTTGTGTTCAGCTCTGTGGAAACACAGAACAGGTCATTAGAAAGCTTTCTGGATGGCCTGGGAATTTTACTGATAAGT-CGACAG-tacatagacttttaaaaatattcatagcaaggagatatccaggaatGAGAACATTCCACAGAGTGAACAAGGTAATGAAGGCTCAGAAAACACAGTACGTAGCATTTACTggcaaagaacaaacaaatgttTGCATCTGACTCTATTGCGGAACATGAATCTGAGCAGTAAGCTCCAATGAGTGTCATGAACCAAAGAACTGTTAGTGTGTGAGAAGTTTCATCAAGCTCATCAAGAAGAGCAGGAAAGCTGTAG-ATAGTTTGATACAGAGGCCAATTTATAATTTAACTGTGTAGACAATGAGG-AATCATTTAGGGATCTGAAACTGCAGGAGGAACAGAG----GCAGGCCTGTGAATAGGACACT-TACCTTGGCGCCAGGATGTCCAATATACTGTTGTGAGGATATAAGAGAAAACAGGGCTA-CAATATACTAATTAGAATGTCTCTGTCAGAATTCACAAGAGGGCAAACCAGGACCCAGTAATAGGAGCAGAAGAGGGGAGACCCACAAGTGGTGAATTTCAGGCCTTCCCCTGGCATGTCTGGGTACTTACTGGGCCTTGGCTAAGCA-----GAAAAATCAGTTAAGCT

a score=14741
s chr3            98855948 807 + 160039680 CATTATCATTTTCCTATGGGCTCCATACTTTCC--CAGGTACTGTACCTTTCAGATTGACATCTAGGATGGTCTGCCTGGGAATGACACCTGTGACATCAATGACAGCAGCAGTGTGGATGACAACAGAGATGCCCTGGCAGGCTCTCCTCAGGCACTGGGCATCCAGAATGTCTCCTTCCAACACTGTCACCTTGGTCTTTGTCTGCAGCTCTGTGG--ACACAAAGCAGGTCCCTGGGAAACTTTCTGCATGGGACGAATATTTCCTGACACATGTGTCAGT---TACCTAGGCCTTCAAGGGCAGTCATGGTAAGAAGACAATAAGGAGGAGGCTTTTCTTCTGAAAGAAGC------ATAAACACTCAAAAATCAGA-ATGTAGCAGTTA---TCAGGAATGAGGAAGCACCAATATCCA--CCACATCCCTTTGTACAAAATGCATCTGAGCAGTAAGACGCCATTTCTGTTTTATACACAAACA--------GATTTATGGGAAATTCC--TACATTCACTAAAGCAACTGGAGGAGTGGTGGCACAGATATGTAAGGAGGGAGAATAGGACTCAGTT--GATAGGGAATGGGGAAATCATGTGTGGATTTGA------AGGAGAAACAGGGTGATGGAGTTCTGTCTTGGGAAGCTATAATATCAATCCGAGATTACAAA----CTGTGAAGGCATTGGGGAAATCTGAGCAAGGAACATGCTAACAAGCTTGT---------------------GTCCTATGAACTTCCAGTGAGGAGGATTCAGAAGAGGGAGACACAAAGATG--GACATTCAGCCCTGCCCCTGATAGGTCTTGACACTTG----GGTCTGTGCTGAGAACAAA
s HiC_scaffold_1 108389274 867 - 233722169 CATTCTTCTTTTCCTGCCAGCTTTATGTCATTCATTGGCTACTTTACCTCTCAGGT--GTACCCATGGTGGTCTGTGTAAGAATGACATCAGATGCATCAATGGCAGCAGAGGCATGAATGATGAGTGAGATGCCCTGGGAAGCTCCTCTCAGACTCTGAGCATCCAGAATGTCTCCTTCAAGCACTGTcacctttgtttttgtcttcagcTCTGTGGAAACACAAAATAGGTCATTAGGAAGTTTTCTAGATAGACTAGGAATTTTATTAGTAAGGTGACTGTTGGTATGTAGATTTTTAAGAATATTCAAATCATGAAGATGTCTAGGAAAGATAACACTACATGGAAGGAGCAAAGGAATGAAAGTATAGAAATCACATGTTTAGCATTTATTTTCAACAATTAAACAACTTTTGTATCCCATTCATGTTCTGTTATAGAACATGAATCTGAGCAGTAAGCTCTGATGAGTATCATGAAAAAAAGTATTGTTAATGAGTCCTGGGAAGTTTCATCAGATTCATCAAGGAGAGCAGAGAAGTTGTAG-ATAGTTGGATAAGAGGCCAACTTGGCATTTAATTTGTGTAGGCAATGATG-AACCATTTAGGGATCTGGAACTgcaggagga--agagaggcagggCTGTGAATAGGATACTCACATTGTTATCATGATGTTCAATGTCCTTTGTGaggacataaaagaaaac-aagactgcaattcactaatcaaaataTCTCTGCCAGAATTCATAAGCGgtcaaaccaggtcccagc-agtAGGAGCAGAAGAAGGGAGACCCACAAGTGGTGAGTTTCAGGCCTTTTCATGACAGGTCTGGGTACTTAACTTGATCTATGATGTGCAGAAA

a score=20053
s chr3            98857407 986 + 160039680 AAACCACACTAGAAAAGGAACAAGCAACCATACCAAGTAGAAAAGACAGAGACCCTCTGCAGAGGCTGCAA--TCCAGCAT-------CCTTGCTAATGCTGCAGAGCCCTAAACAAGTATATACTGA---TATTACTT---TACAGGA----AGAACACAACTGTGAGATTGCCAGATGGGAAGAAAGACAGTGTCTGGAACTCCAGCAGCTGGGTTTGTGGCCACCATCTCTAGATCAGATACAAGACAGACTATAGTCCC---ACAACTG--TGGTGTATTTTACGCTGTGTGATC-ATGAATCTTCCAGATGTGTTCAAGCATGGAGAAGCCTTAAGTTCCAAGAGGGCTTCCATATTTGCTAGAAAAGATTCCCCCCAATGCTCAGTCAGTACTCC-CAACAGTCACACAAATAGAGACTC-TGACCCACTTACTGGAGAATTCCTCCTTGGTTTCTGGTCGGAATACTTTGTCCAGAGCTCTGACCTCCTGCAGTTCTTTCTCCTGCACCAACATCTTGATGATCCTCTGGCCCACAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGCCATGGTCAACACAGGAAACAGATGACAGTGG-GAGCTGGTATGATATAGGGTAACCCTTAGGAGGGCTAGAAAAAAAAGACCCAATGAAAACAGTTTTTCAGAAATCTCTGGGATTCACTCTA-CCCAATATTTGCTAGCACACTGTGATCACAGCAGCAGCAAGAGGAGCTAAAATAAAATAAAA---TCTAACCTGTTAAATTGTTAAAAGTCAGATGAGAGTGTCTGGATGCTGATCTCCTC-AGCCCTCAGATCAGGACTAGTGTTTTA-ATCTCTAGTCTGCTGACTTATCATATCTTGACGCATGCCTGCTTCGTGACCA-TATTTATTCTTT-TCTGTGGTCTGTCCTTCCCAGTGATTGATAA--ACCTTATGTCCTTTA--TTCCTGCCACAGGATGAAAA-GCCAGCTTCAAGGTTACACTGTGATAAAGACTGTT
s HiC_scaffold_1 108534578 984 - 233722169 aagcaaaactaaagacaAGAAAAGGGCCCAGGGAAATCAAATGAGGCAAAGTTCCACTAC------TGCAACCTCCAGCTTAGTAGTACTTTGCCTGTTTTGCATAG---TAATCAC---TGAACTGAGCACATTAATTAGCTACAAGAGAGGAAAGAACTAATGTGTGATTCCTATAAGAGAAGGGGA----------GAAGTTTACCAGCC-----TGTGTCCACCTTGTCTAGTACTGA-GCAGGCCAGAGTCCAGTCTCCAGGCAGCTGATGGGTGTCGATTATGTTCTACCACCCGTGATTACTCCTGGTGAGTGTGGACACACAGAGCCTTAGGGCTCcaag------ttctttttcatttcaggAGCATCCCTCTC-TACTCACTCAGGCTTTCACAGTGGAGGCCCACACTCAGTCCCACAGCTCACTTACTAGAGAATTCTTCCTTGGTTTCTGGTTTGAAGGCCTTGTCCAGAGCCCTGACTTCTTGCAGTTCCTTCTCCTTCACCAACAAGTGGACGATCCTCTTGCCCAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCATCCTGTCATCATCAGTTCAGGAAGCAGAACACACTAGCGAGCAGGTGTGGTGACTGGGCACCCTGGAGAGAGCTAAAGAGAGAAG-TTGTTTAAGAACAGATGCACAGACACCTCATCTGCTCACTGTCTTCCAGTTTTTGCAAATTCCATGTCTCTAC--CATCACCGGGAGTCACTGGAAAAAAATGACAAGTTTTAACCTA--GAGCTGATAAAAGGCAGATGAAGGCACCTGGATGCTGGTTCCCTCAAGTTTCCAAGGCAGCACTGGAGCTTTATGTCCTGTGTCCTCTGACTCATCCCATCACT-TGTACTTCTGTTTCATTCTCATTGCTCATTTTTTCTCCAGGATCCCTCCTCCCCAAAGAATAATAACTAATTTACATCTTTTCCTTCCCTGGCA-AGGCTGAAAACGTCAGCTTCAAGGCCA-GTTGCGATAAAGACTCTT

a score=13503
s chr3            98857625 413 + 160039680 TCAGATACAAG-ACAGACTATAGTCCCACAACTGTGGT-----GTATTTTACGCTGTGTGATCATGAATCTTCCAGATGTGTTCAAGCATGGAGAAGCCTTAA--GTTCCAAGAGGGCTTCCATATTTGCT--AGAAAAGATTCCCCCCAATGCTCAGTCAGTACTCCCAACAGTCACACAAATAGAGACTCTGACCCACTTACTGGAGAATTCCTCCTTGGTTTCTGGTCGGAATACTTTGTCCAGAGCTCTGACCTCCTGCAGTTCTTTCTCCTGCACCAACATCTTGATGATCCTCTGGCCCACAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGCCATGGTCAACACAGGAAACAGATGACAGTGGG-AGCTGGTATGATATAGGGTAACCCTTAGGAGGGCTAGAAAAAAAA
s HiC_scaffold_1 108449089 411 - 233722169 TCAGTAACAAGTCCAGAAACCAGTCTCTCAACAGCTGTTCAAGGTCTCTTATTCTGTACATCCTCAGTTCTTTCTGATGAGTGTGGACATGGGAGATCCCTCATGGCTCCA---TAGTTcctgtatttgttttaaaaagcactcCCTCCCACACTTGCTTAG-ACTGCAGA---------AAATGAAGCTTCCATTTCACTTACTAGAGAATTCTTCCTTGGTGTCTTGTGTGAAGAATTTGTCCAGGGCTCTGATCTCCTGAAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTTACCAGGCAGCTCCAGCCTGTCATGGCTGATGTAGATAGCAGAACACAGTGAGCAGCAGGTGTGATGATAGATGACTCTGGAGTGGGTTAAAGAAAAAA

a score=14269
s chr3            98857625 429 + 160039680 TCAGATACAAG-ACAGACTATAGTCCCACAACTGTGGTGTA-----TTTTACGCTGTGTGATCATGAATCTTCCAGATGTGTTCAAGCATGGAGAAGCC-TTAAGTTCCAAGAGGGCTTCCATATTTGCT--AGAAAAGATTCCCCCCAATGCTCAGTCAGTACTCCCAACAG-TCACACAAATAGAGACTCTGACCCACTTACTGGAGAATTCCTCCTTGGTTTCTGGTCGGAATACTTTGTCCAGAGCTCTGACCTCCTGCAGTTCTTTCTCCTGCACCAACATCTTGATGATCCTCTGGCCCACAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGCCATGGTCAACACAGGAAACAGATGACAGTG-GGAGCTGGTATGATATAGGGTAACCCTTAGGAGGGCT--AGAAAAAAAAGACCCAATGAAAACAG
s HiC_scaffold_1 108410342 438 - 233722169 TCAGTAACAAGTCCAGAAACCAGTTTCCCAACAGCTGTGCAAGATCTCTTACCCTGTACATCCTCAGTTCTTTCTGATGAGTGTGGACATGGAATATCCATTATGATCCCACA----TTtcctgtttgttttaaaaaacatccTCTCCCACAGTTGGTTAGGCTGTAGAATGGATCCCTAATGTGAAATTTCCAGTCCACTTACTGGAGAATTCTTCCTTGGTGTCTGGTCTGAAGAACTTGTCCAGGGCTCTGACCTCCTGCAGCCCCTCCTCCTGCACCAACAAGTGGACAATCCGCTGGCCTAGGAAGCCTCCTGCTCCTGTCACCAGACATCTCCAGCCTGTCATGGCCAATGTAGAGAGCAGAGCACAGTGAGGATCAGATGTGATGATAGGTGACTCTGGAGAggattaaagaaaacaaaagtccaATAGGTACAG

a score=9796
s chr3            98857656 391 + 160039680 TGTGGTGTATTTTACGCTGTGTGATC-ATGAATCTTCCAGATGTGTTCAAGCATGGAGA-AGCCTTAAGTTCCAAGAGGGCTTCCATATTTGCTAGAAAAGATTCCCCCCAATGCTCAGTCAGTACTCCCAACAGTCACACAAATAGAGACTCTGA-CCCACTTACTGGAGAATT----CCTCCTTGGTTTCTGGTCGGAATACTTTGTCCAGAGCTC-TGACCTCCTGCAGTTCTTTCTCCTGCACCAACATCTTGATGATCCTCTGGCCCACAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGCCATGGTC-AACACAGGAAACAGATGACAGTGGGAGCTGGTATGAT-ATAGGGTAACCCTTAGGAGGGCTAGAAAAAAAAGACCCAATG
s HiC_scaffold_1 108302776 389 - 233722169 TGCAATGTCTTTTATACTGTGTCCTCTATGAGTTCTCTTGCTGAATGTGGACATGGGAAGAGTCTTTGGCTCCAAG----TTTCC---TTCGTGAAAAGAAACCCCACTCTACATCTACTTAGGCTTTATGATGGGTCCACTCTGTCAAGCCCAGAGCTCACTTATTAGATAATTAGGTCCTCTCTTGTTCCTGGTTTGAAGGCCCTGTCCAGAATTCCTGAACTCCTGCACCTCTGTCTCCTGCACCAAG---TGGATGATCCTCTTGTCCAGGTAACCTCCTGCTCCTGTCACCAGCCAGCTCTACTCTGTCATGGCCAAATGCAAGAAGTAA--GGCACAAGGATCAGGTGTGGTAACTGAGTGATTCTGcaaaaagccagagaaaaagaTCCAAATG

a score=12364
s chr3            98857690 350 + 160039680 TCCAGATGTGTTCAAGCAT-GGAGAAGCCTTA-AGTTCCAAGAGGGCTTCCATATTTGCTAGAAAAGATTCCCCCCAA-----TGCTCAGTCAGTA------CTCCCAACAGTCACACAAATAGAGACTCTGACCCACTTACTGGAGAATTCCTCCTTGGTTTCTGGTCGGAATACTTTGTCCAGAGCTCTGACCTCCTGCAGTTCTTTCTCCTGCACCAACATCTTGATGATCCTCTGGCCCACAAACCCTCCTGCTCCTGTCACCAGGCAGCTCCATCCAGCCATGGTCAACACAGGAAACAGATGACAGTGGG-AGCTGGTATGATATAGGGTAACCCTTAGGAGGGCTAGAAAAAAAAGA
s HiC_scaffold_1 108393218 351 - 233722169 TTCTGATGAGTGTGGACATTGGAGATCCCTCATGGCTCCAAA---TTTCCTGTATTTGTTTAAAAAGCACTCCCTCACACACTTGCTTAGGCTGTAGAATGGATCCTAACA----------TGAAGTTTCCAGTTCACTTCCTAGAGAATTCTTACTTGATGTCTGGTCTGAAGACCTTGTCCAGGGCTCTGACCTCTTGCAGCCCCTCTTCCTGCACCACCAAGTGGACAATCCGCTGGCCTAGGAAACCTCCTGCTCCTGTCATGAGGCAGCTCCAGCCTGTCATGGCCAATGTAAAGAGCAGGGCACAGTGAGCAGCAGATGTGATGATAGGTGACTCTGGAGacggttaaagaaaaaaaa

a score=6245
s chr3            98874451 602 + 160039680 TCCTGGAAAGGGGTGAGGCTTGT----TTCTTATGAATGAGTTTGTACAAAACGATGTTCTAGGCTGACTTCTGGGTAGCAGAAATTTTCTCAGACTTTAATCTTTCCAAATATTTTCATGCTATAAACTTCATTGAAAAGGCTTAGATTTATTTGACAAAATGATTATGACCAGAATAAAGATATCTTCTTTTTCATGTATCAGTAAATGACTGGAATATTTAATTTTAA----TTTAGTCATAAAGTTTTAAATATGAGTTTCAAAATCTTCCTCTTGTTTTTTTATTGAGGTCAGCTTCTGTTA-ACAATGGACATTAGGCAATAGATCATAATATTTCTGTAACATGCT------------------GTGACAGAAACTTGAATAATTCA-----------CATGCTGTACTATGCTTCAGAATTTGACTACATATATTGATGT---TTTAAA-----AATATTTCTTGCAGGAGGGAATGAATAAAAT-------CAGGAT-----------AACCCTGTCCC-----------CATTTC----------------------TTTTTGAACATATATTGATA-------------------------------------------------------------ttttaattgatacatagtaattacacataattat--ggcacagtatgacatttcaat---tatgtataatgcactactgatcaaatgaaggtaactggtatgt----cacatcagatctaa
s HiC_scaffold_1 108543612 745 - 233722169 TTCAGGAAATGGGTGGATACTATAGTTCTCTAGTGCATGAATCTGTCTGAGATCATGCTCTTAG-GGTTCCCTGGGTAACAGTATATTTCTCAGACTTTAATGTCTACAATTAGCTTAATTCTTTAAGCATTATCAAGAAAGTCGACATCTATCTAATAAGATTATTTTCaccaaaataaag--tttttcttgcttgcttactGGTAAAGGGATAGAG--------TTCAAGGACTGTGGaagcaaa---ttaaa-atgaatcaCCCAGGTCCC-------TTTTCTTTGGAAGTCAGTGCCCTTCACAGACCACACATTAGGCAATGAATTGTAGGA-TTCTGTAATATCCTAGTAGTTCATGACCATAAATAACGTagacttgttttgtttgatcctgcttttctttttgttttatctcaCTGGCCTTGATTCTGTGAaccaaagtaaaattaaattcctAAGGTCACTCGCAGTAGTTCATGAGTTAACTTATATGACAAAATTTTTTAAAcgcaattttattttacattattttatatttcattaattgatttatttatttggttcctGGACTTGGACTGATGACCTAATGCTTACCAGACATGTGCtgagctactgagctatatccctagcccacaattttatttttaaatgacacatagtaattatacatatttatggggtagaGTATAACATTTCAGTGTATGAGTGTAATGTA-TATTAATCAGATTAGGGTAATTGGTGTATTTTACACTTCATATATAA

a score=31772
s chr3            98880712 3517 + 160039680 CTTTAATGGCTTGTTGACTGACCATTAATCAATGTCTTTG------------------ATCTGGATAGACACAATGACAGATGAGACAGAATCTATACTTAAAAGGGTGTGGTATGTAGTATGTAAGACGAGTAAGAAAAA-TAGTCAAAGGACACAGTGACATTTTATGGTTGACCTATATTCATGAGCTAATAAAACCAAAACAA-----AAAAGATCTTAAGCCAGGCCTTGCCTACTATCTAGCTTTGGCTCACAGTACGCAGCACATTTCCTTAAATTCTAATGT------------------------TCAGGGACACAC-------------------------------------AGGAATCATAGGTGCCCACTGGCTGACAAG----GACACTGTTAT-----------------------------CTTAGCCTTGATTTTTGCTTTCAAGGGCGTGCCATCTTTTTCAATCTTCAGAATTTAATAAA---GTGTTCATGGTAGTTCCTTAGTTGGAAGGTTTCCAAAAGATGTGTTGCAGATCCCTGATGATTCTGGA-----------------TCACTTTTA------AGTTTTCAAGACAGCACACTAGAGCCCCAGCTGGCTAGATAGGCTGTCTATATAAAATTGACCTGTGAGCGTCCTCTCCAGAGAGTCAGTTTGTCTATGCAACCTATGCAAAAGTATCACTTTCTGA--ACCCATCATGAAATAGAAAGTGTGAGAATAACACTTTAGTTTGCTCTCCAGTTCTTGCAAAATGCATCCCTAAGGCTCTTCTGTCTCCCAACATcagccctggcttgaacatctctgatgacagactgaccatctccagagacagTGAGTATTTGGTCATAAGTTCTGCCTGCCAGAAGGCACTGGAAAGGAaaaacaaaacaaaacaaaacaaaacaaaaTAGGTCAGCCTCTTTA---ACTGCTACATTTCCAGTGTCTGCCATAATAAGGCAGGTATGGGAAAATATTTGCAAAAAGGATGACAAGAGAGTgggagaaagggaggcaaggaggagggaggaggaaggaagggagggaaggataaaggaagggaggaaggaagggagggagaaagggagagatggatgaagggaCAATGGAGAAAAAGAGGGAGGAACACTAATCATCTCTTCTTATCCTAAATGCTTCTTATATTAAGTGCCCATTGAGTCTGATATCTTTCTCACCTCTCCAGGGGATCGGAGATCCTTCAGCTTTATGTTTGCCTCCAAATCCAGCAGGCTTCTCTTGTTCCCTCGCCTATTGCCAAGTACAGGTGCATCTACAGTGACCACCAAAGCTTTGAAACCC-AAGGCTTCTATCCTCTGAACCATCTGCTTGTTGATGTCCCAGTCTGGCTGCACATAAAGTTGGAACCAATGGAGGCCTCCAGGGGCAGCAGCAACAATGTCTTCCACAGTATAGCTGGCATAACTGCTGATGACATAGCAGATGTTGGCCTTCTGAGCAGCTGGAAAGCAAGAAGCATGACCTAGTTTGGAGGGCAGAACTATTCTGACCTTGCCTCTGGACAGG-------------TTGCCTAGTGAGTGGAGAGAAAGCCT-GAGTACATTCTACTTCCC----------CATGAGAGATGGCATGGTTCAATGGAGAGGGTTAG---TGTTTGCATTCTCTTCCG--TGTAAGCTACTCTGTAG-----------------------------------------------------------------------------------GGGGAAGAAATATGCCAGAGAATGAGAA-----------------------------------------------GGATGAATCACACCCCTCTCTTTCTG--TGCGGctttgaggcttagttcctttattcgtcaaatgggaaaggtactgataaatgtcatggccacttTTATCATTTCACTCTGTCTGCCCAGGGCCTTGATCTCACTCTGAAGCTGCATCCATGGCCAAAGAATTTGTCCTAATCAAAAATTAATGTTAATGCCTCACATCAGCAGGAAACAGTTTGT--TTCACTCCACTACAAGACAA---TACATTAGTG--CAGTAAGTCAACCATCTTCATATAG--GACATTAATGTTTCCACTTAGCTATGCCTGTTTGTCTCTTTAACTCTAGAATCCTCATACTCATTGCCTCATGGAGTCTAAGGGGAAAAAAATCAGAAAACTTCTGGGAAATacacaca---cacaca-cacacacacacacacacacacacacaaatacaccctatcgtataccacagatacccacactacacacatcacccacacacacaccc----ctcacatatacca-----------------cacacacctacaccacacaacctgacatacaaacacacaca-------------------cacacataccatacaccatacacacacatcaaacacataccacacacacacaGAGGCAACTTGGAGTCAAGAGGATGGACTCCCAAGAATGTTT--AGTGTTATCTCTTCTCAT-----------------------------TCATTACTGTTACTATCCATGTTTGTGGAGGCCACAGGGACAGACTCCACAGGGTCCACAAAGACAGGCCTCCACGGGATTTATTAGGAAAGAGCTAAAACCACCAAAACCCTTTTTGTTACACAAGACAAGGTCAATCAAGGAGAAGAGAAGTGGACTACTTAGAAAAGAGCAGCTACCAAGCCCTGTGTGAGGATTTGGGGAAAAAGATTTCTCATCATCCTAAATGTAG--ACTCAGAATTCAGCCCCATCTCTAGCCCACAAAGCTGCAGAGGGTTCCCTTTCTTGGTGCCATGATTAGTTCCTCCACTTGATATACC--------TCTTTTCCCT------TGGTATGATTCAG--GGGGTCAGCAACCCTCTTTCAAGGAATGATTTGA---GGTCTCAGCAT-CTCCTATTTATCAATAGTTCCTCTTTTACTGGGATCATC-----ATTATGGAC----AGTATGTCCACATTCTACATC--AGTGTCACACAGCTGTGGCTTATGCAATCCCTTAATCACCATTCTTAGTCCCCATAGGACTGATGTCCCTAAGGCCTTTCTGTAAGAGGTCCTGATGCTCCCTAC--CACTTATCTGGGCGAGAACTCTCACTTACTTCTGGCCTTCTGGAAAGGCAGCCTTCAGGTGGAACCA-----TACCTTTAGCTGTGCTCTTTTCTCCATCTGCCCAGGCAATTGAATGAAAGGCTGTGGGTGAGATGCAAATGGGGGCATTGATCTCCTGCCCTTGGATTGTGGTCCTGGTGTCTATCTTTGACACATCTCTCAGGTATCTGGGGCGGAGGCGGATTCTGTACTAGACA--GACAATAAGATGGATT---------ATTTTCCAACTTGGCTACTCTTTCTGGAGCTGGGACCCTAATTCACAATGCAAATTTAAATAGATTTAGATCTC--TGAACCCTTCTTAGGATTAATTTGCTGATCCTGAATAAACAGTACAGG---TTTAGG------------AGTAGGCAACTTTCCAGGGTATCTTTGCCCACTAACCCAGTCCCCTTTGAACTGTTGGTAAACCAAAGTCCACTTTAGCTTCTGTCTTGCACTGTT-------AGAGTACTGTTTTTATGTCTTGACTCTCAGTGCTTAGGT-GCTTAATTTA-----------GTCTTTATCAGCAATGACTTGACAGGGAAAGAAAAATTCAGG-------------------------CATCCCCGGAAAGAAAGACAAGGCAATCAAGAGTTCAAATCCTAGAAGACAACCATGTCTCCCAACCCCTGACCCTCAGGGAACTAATTTATTTGATTTA-----TATACTGCTTTACAGAAGGTAGGGTAATTCACAAAT----GACATCTAAAACATTATTTTACAAC
s HiC_scaffold_1 108727700 3588 - 233722169 CTTCAGTTTCTTATGCATCAACCATTGGTCC-TGTCCTTGCTTTACAATTACTCCAGAATCTGGA--GACACAAAGACAGATAAAACAGAATCTCTACATCAAAAAAATTCAAGTTTAGCATGTAAGATGAATTAGAAAAAGTACTCAGAAGCCAGTTTGATATTGCTT--TTGAGATATATACA--GATTAGTAAGACCAAAACAATACTTCAAGAATCCTAAATCAATTATTATCCAACATCTATCATTGGCTCTCCATGTATATCAAATATCCTTTAATATTCATGTACCTCTGGAAACTGGAATAAGGAGTCTAAGACACCTCAAGGCTAATGGTTAAAGAAAACTGAGTTTCTTAGCTGGGTATCATAGCTGCCTATTGACTAAAATTTCCCATCTCTGTTATTCACTTTGAATATAGCAAAGGAATTCCAACTTTACCATGGCCTTTCCTTTCTAGGGTACTCTATCTTTT-CAACTGTAAGATTTTCACAAAAGAGTGTTCTTTGTAGTCACTTAGTTCAAAGGTATTGTACAGGCATAATGTAGCACCTCATTGCTCAAGGAATGAATTGTGCATACAGTGACTTTGATGCCTCAGTTTTCAAAGCAATACGATGG-GACTCAGTTGGGTAGACTGACCGATCAGTCAC--TTTGCCTGTGAATCACCTTTTCAGAGCATCAATCTATCTACAAGTGCCATGCAAAATTATCACTTTCTAAGTATGCCTTTCAGAGTATAAAATGTTAGATGATATCTTTAGTTTACTTTCCTACTGTCAGAAAAATTCTTTCAAGGAATTTT----------------------------GCGTCTCTGTT--CATATTGGGCAACTCCATTGGTAA-GAATATCTGGTTTTATGTTCTGCT----------CATTTAGGAGCAGGAACCAGAC---------------------------CTTCTTTAGAAACTATTATATCCCAGGTATCTAGCATAGGAG---AGGGACTCAAAAATACTGATAGAAAGGAAGacgagagaa---------------------------aggaagaaagaagggagg--------------------------------------------------------------------------------acatT----------------------TGCCTCTAGTAGTATCTGCC-ATCGAATATGATATTGTTATTACCTCCTTTGGTGATCAAAGATCATTTAATATCAATTTCTTCTTCAAATCCAATTGGTTTCTGATAATATGTCACCTTTTTCCAGTTATGGGTACATCCACAGTAAATACCAAGGCTTCGAAGCCCAAAAGATTCTGCCCTTTGGACTAGATGTTT----AACTTCTAGTTTGTCTGCGCATAAAGCTGGAACCAGTGGAGGTCTCTTGGGGCAACAGCAATG----TTTTGAGGGTAAAACTCGCATATATGATGGTGATGGAGCAGATGCTAGTTGGTTGGGTAGGTGCAAGacaaagtaaaagacata-ttAAGACGGTAGAGGCATTCTGGACT------GGGGCAAGAAGCCCAAGGTGCTTGCTTTATGAGTAAAGATAAAATTTAGACTTTGTTATGCTTCTCTTAGGTTACATATGGCAGACAGCTTGATCAAGCTGAAAAGCCCAAAGCTGTTTGGGCACTCTTCTGTATGTAAACTATCTTGTAACCACTAAATcccataataaaattatttaatttacagAACCACAGAACCACATACGAATATAGCTTGTCATTTCTTAACAAAGTAGAAGTGAAATAGGTCAGCGAACGGGGAATGCAATTCCCCTAGAAAACCTTGAATTTTCAGTAGAAGCTGAAACTGGAAGGATGCTAGTTCTGTCACTTTGCTTGTTACTTTGCATTTCAtttccttcatctgtaaaatgagggaaATAC-------------------------CACCTGACTTT------------------------TCTGGAG----------------------TGATCCAAT-AAGAATAGATAT------------------GGAAGCAGTCTGTAGTTTGCAAAGTGATGTAGTAAATGTATGTTAATGATAAGAAGgttgatgatggtgatgatgttgATACTACTGCTGCTACTGAA--ATGCATATTTCTT-------------ATTTCCCATTTTCTGCATTTCATAAGGTGT-------------TTTAAAAGCATGTTAATACCACTCCCATTTTACAAATTACGTACAAAAATATTTGGCTTGATCAATAATCAATACTGTTCAATTCTCATATCAACAGGAGAGATCCCCTCCTTTTACTCACTCTAAGCCCACACTCAATGATGAAGACTTAGGAAGCTACTCATTCAAGACATTCATTTTACAATTCAATCACATTCAGCTCTAGGATCATTAGATTCAT-TACTTCCTGCATCATGGAGTCAGAAGACA-AGACCCCAGAGAAAGACAGATTTAGATCAAAGTGAAGGTTATAGAATTCCTAGAATATTTTCAGTCTCATCTGTTGCCATTATCATCATTGTCACCATCAACactggtattattattattaatattgatATTAGTAGAGGATATAT-----------------------AAGAGAGT------GGGGGGTCACTACCAAGGAGACATAA-CACAAGAAATGATTACCTAAAAGATAACAAGGTCAATTGAGGAGATAGGAAATAGAACATTTGGAGATGAGCA-----------TTGTGGTAGGACATAATCTCATGATTTGCTCTTCAGCCTAAACTCAGTTACTCACCATTCTGGCCTAT------------AAGAGGAAGAGAG-GCCTATTCCTATGGCCAAATTTA-----------TGTTATACCCAGGACTATCCTTTTCCTTACAGGTAGTATAATTCAATTTGGACAAATGGCCCTCTTTTGAGGGATGACTTGACTGGATTTTAGTACACTGCTTTTCAT-AGTAACTGCTCTCTCACACTATTTATTTGTTGCTTACTGACGATGAGTATTTTCTCAGTCTTAGGTGAAATGTTATGCAA--ATAGCTTTAAGCATTTTTGCTCCGCCTTCCTTAATTCCAATCAGACAGCTGTCCCC-AGGCATTTCTGTGAGAAATCCTGGAGTTCCTTGTCACACTGCTCTGAgggaagcttcttgcacacttcTAGCCTTCTGAGAAGGGAACCTGAAGATGAGATTAGTTTGTGCCTCCGACAGTA-------CTCCATCAAGCCAGACAATGTGGTGGAAACTTGTGGGTGTGATGCAAATGTGAGCACCAGTCTCTT-CATCTGGTCTGTAGTCTTGGTGTCCATCActgacacatttctcagatacCATGGATAGAGGTAGATTCTGTACTAGGCAACGAGCACAGGTTATGTTGGTGAGAAGAGTCTGCAGCATGGCAATGCTGCATGTAGGTGGGGCCCCTGATGCCAGGTTCAGCCCAAGCCAGACTGGATCCTGATAAAATCTTTCTGGATATAGTTGGCTGATTCTCAGTAAGCATTTCAGGACCATCAGGAAGCTCATCTCCAGAAAACTACTCCCCAAGTCATATTC-CACATTAAGTCAACTGTTTTTCAGCTGCTAACGCACCATGGTCCACATCAActccttccttgctttttttaGTTTCTGTGCCCTGCCTCTCTGAGTAGCCTCTCAGAACTTGAATGGCTTCACTTATTAATCACAACATCTATAACAGAAAAGAAGAGGTAGG---AAGAAGTTTCAGGGTCATTCCCCCCTCAGTCAGCAGCAAATCCTTAGAAAGTAAAA-AGGCCACTGAAGAAGAAAAATCCCAGAAG-----CATATCTT----CTTTTGA-----AGGAGGCTAATTCATTTTACTTAAATATTGTACTGATTCATAAAAAGATAG--AATTTACAAATATTGAATTTGTAAAACCCAATTTTAAGAC

a score=10767
s chr3            98884600 362 + 160039680 TCCTGTCCACTATGTGTTCACTAAAGGCAGA--------------ACTATTCCTATGTCAGGGGCTTTCAACCAATGCATCCTAGAGTAACAATGGAGAGGATAAAGAGCAGACCTTCTAAATGCTGCCAAGTTGTCATTGTAGGTTATGCCATCATCAGCTTCTCCTTCAATAAAATCCCAGGAGGTCTTAGACAGCTGCTTTTGTGCTTGTGCCTTAAAGTCTGCCAAACACAGCAAAGACATTGCTGGGCCTTCGAAACAGAAAAACAAAACAAACCCAGTGAGAACACGTTTGGCATAAATG----GGTAGGGGCAG-----AGTGTGAAGCTGCTTAGTTGCCATATCTGTATGTTGGTGTTCTTTAACTCAGTGCACTT
s HiC_scaffold_1 108734385 374 - 233722169 TCTTGAGCATTCTATATTCCTTAGAGGCAGACACTAGGAGTACTAACTGTATC-ATCTAAGGGGGTCTCAACCAGTGCACGTTAGCCTAATAATAGAAAAGATACAGAACAGACCTTTTAAATCCTGCAACATTATTATTCCATGTGAT--------CAGCACTACCTTCAATAAAATCTCAAACTGTCTTAGATAGCTGCTGTTGAGCAAATGTCTGAAGGTCTGTCAAACATGCCAAGGACATT--TGGACTTTCAGAAGGACAAATCGAACCAAACATAGTAAGGACGCAGCCAgaatagaagaaaagataaaggGGGAAATCAGAACAAAGTTCTTTGGATGCAGCATCCTTCCTCCTGTACTATTTAACTTAATGCAGTT

a score=31175
s chr3            98884969 2109 + 160039680 CCCCAAACCAGAGGAC------------TTCCTTC-------CTCTCACATCCACTCCCCATACCGAATCATCTGGTCTTCTGAATGTCTACCATGGCT-TCTTCCTACGTTCTACACACATGGCTTTAGATC--ATAAAGGCTGCACCACACCTTAAAGGATTACAACCGAAGAGCTTCTT-------------------------GCCTCC---TCATCTCTTTCTAGGTGGCATGGATCCTTAATAAAATGAAAGTCTCATTGAACATCTAGTGTCTCCAAGTGCCCATATTACCTCACTTGCACCTTTCCAGGACCTGCTTCCTAACTGCCTACTTAGTGTCATGTCTCAGTGGCCTTAATTTCACTGTGGTATGGCATCGATACCACTATGTGAAAAATCTGCTCTGCTGTGATATCAGTGTGAGTTCCCAAGATCTCTAAGATGTCTGAATTAT-TGAGGCTACCGACAACATAGTGAAAACAGCTGATTATTTTGGGTTGCCCCTTGGCTAGGTGATTGGACATGTTGC------------------CACAACGTCAC-------TGCCTTCTACCTTTTGTTATTTTTGCCAAGA----------GCATGTTTTTCCCATTTATTACCATCAATGATCTGAACCCTGCATCTAGTACATGGGACTTTTAATACAAGTACG-------CAGAAGGCCTGAAGAGGGCTTAGTTTAGAGCTCACCGGTAG-TTTCTCCAATAGGAACGAAAGAGTGAGATCAACAGCTGCAAAGATGCTGTAGGAACTTGGGTTGGTCACACCATTCAGGGCTTGTACACAAGAAGATTCTGGAAGGAAAGAATGGAAAATGCAAACTTTAAATACCTAGCCAACTCTGGTGCAGGAGATAACAGTGTAAAAATTACCC--------TGAGCCTAAA---AGTAGAAACCAGAGGACTTTTAAGCTATTGGGTAAGGGAAAGGTACATGTACCAGAAACTCA----------------------CTCTTCAATCAGAAATGGCAAAGGACA-------------------AAAATTCCAGATGAAAATGTGGGGTGCTGAATATCTTAG-----GTAGAGATGAGGCAGAACTGGTCTGAGGTCAATTGGAACTAGGCAAAAGCCCAGGGAAGCTCAACAGAGGAGCAGCACACCATTCCTACCTAAGGGGCTAAACAGAAGTTCTGTTGAaaaacaaaacaaaacaaaacaaaaacaaaacaGAGTCTCCTGTGATGTGGCCATTTTACATGGAGGTTATGAAGAGGCATTTG-ACTACATCTATAGAGCTTTGCACAGGCAACCTTGTTAGTTGTTGGGCAGGACACTACCCAATGCTGAGCTATTCTAATAAAGTCCAGCATCCATATTTGCTTTAACCCAATGTCTACCTACCTTACTCACTGAAACATTCATAAACCCTAGGTTAATGAATCGCTTATTTTAT--ATCCAACTATCTTGCAATTGCTCATTCATAGTTCTAtgtgtatagaaaaattaatatagcagtttgtagtgttatttcttggcagatcttgccttcaaggttaggacttggcttatagttagaaactaacacag------cagcaagaccagataagagtgatttaattttaactgaattgttttgttttgtttgcaaacaatgtgatttatgctaaacatttgctttccttctaggag-cttaggacttcggtacagagagtgatcatacgaccagcccccaacatgagttggtaagcat--agcctctaacatgtctcatcttggcactggaggat--tcatcagatttcttggaagct--------------tatacctgtttttttttcccagtcctttctctatcctaacttttctttgcatcttgtctctgaaatagcctatagcctcaatgatgtgttgagttctgtgaattctcctactgaa------------------cacACAGATTCCACAGCTGTAA-CCCTGACTTTAGGATGATACAATATTAAATTAGTATGCAGATCTATTGATTTCTTCCATTTAACATTCTTCTGTGTGCTGAGTCTATGCTTTTGGGGGAGAAGTAGAATTCCATCAGATTTCAGTTACTGCCTTCCTACACATTAAATGCCCATGGCAATGCTCTTGTGAAGGTATATTGCATAGACAGTGCACAGAACTGAAATCTAATCCACGAGAAGCAGCTCA----------GCATTACCTGTCCATAGTATTGTGATTATGGAATTTAAAAGTTGTATGACAATGAAACATTAA
s HiC_scaffold_1 108735234 2130 - 233722169 CCCCAAGCCAGAGTACAGGCAATTATGCTCCCATCGTGCACTCTCCCACCTCCATCCCTGAGCCCTGATTGTTTGGTCTTCTAGGTGCTTTTCATGTCTGTCCTCCTAC---CTACATGTGTTACCTCAAGTCTACTTGTGGTCCCACCATTTCTTAAGACATTGC--TtgaaaattttctccttttatctctGCTTGTTACATTTGGTCTCCATCTTTTCTCCTTCTAGCTG---------CTTCCTAAAATACAAGTATTCTCATACCT---GTATTCTCCAGTGCCCATAGCCTGGCACTCACAGTTC-----------CTTATTAACTCCCTCACCAGCTTTATTACTTGGCAACTTT----TCCATATATT-TGTAATTCAAGTCACTATGTGGGAAAACTACTCAACTG--ACACTGATAGGAATCCCAGGAACCTCTA-GATGTCTGAGTTTTCTGGGGTTAAGGATgatataaaggaggaaacagAG-ACTTTG--------CTACACTAGATCATCAAATATATTGCTTATTACTTCTAGGAGGGCAAAATATCACCACTTAGTTCTTTGTAATGTTTACTAATTTTGAGAAAAAGAGTATACTGTATGTTGTTTCCCTATA---CTCTCTACCATCTAAACTCTGTAA-----ACCTAGAACTTCCTTTTCTGATATGACTCTACCAGAATAAGGAAAGAGAAC--GGTTTTGGGTTT-CCAATAGACTTCCTCAACATGAGCAA--------GGACAACAGGTTCA--------------------GTCAATTGCAGCAT-AATGGATGTCATATAAGAGGATTTCAGATGGAAAAGCTGAGATATCATGAGTTCAAACCTCTAATCATCTCTAAGGCCATAAGTAGCAGAGTTAAAATTAGCCAAATATTGTGAGTAGAAACTGAGTAAAAACCAAAGGGATTTAAAGTCATTTATTGAAGGAAAGGAACATGTCTCAAGAACTAAAACTTTACCAGGGTGAGATTAGCTCACCAA--AGAGGTGGCAGGGGACAGGAGGAGGCACAGGGAGGCAGATGGCCAGAT-AGAATATGGAGTGCTAGATATCGTGGCTGCAGTAGAGACGAGGCACAGTTAACTTGAGAGCTTCCAGAATCAAGCACATGTCTGGCAAAGTTATACATCAAAGTAGCCCTAGACAATTATTTATGGAACTAAATGGAA----------AAAGTTAAATGACAGAAAACACAG------------CCCCTGAGATGTATTGATCCCAGATGAAAGTGAGGAGGATTAATTTGCATGACAGTCATAAAATTTTTCACAGGAGGTCTTTTCAGTGAAAGAGTAAGAAGCTATCGAG------------CTAATGAAATGCAGCAAGCATATTTAATTTAAC---ACTTTTA--TACCTAACCCTTTGAAAGATCCATAAACCTTAGTTCAAAGAATCAATGTTTGCATTTGTCCATCTACATTGCAAT----CATTTATTATTCTGTGTACTAAAAAGAGTTAATAT-------------GTTGCTCTTTGAAAGATCT-GATTGCAAGGTTGTACCTTGGCTGG------------AGCACAGAGTTCTCACTATTTTCTGATATGAGTG-TTTCACTGTATCTCAACTGTTTGAAT--------AAACAGCATGATTTATGATGAACACCTGCTTGCCTTCTTGGAGTCTTAAGATTTTTGTGTAGAGGGTTATTATATGAATATCTTCCAACATAAAATTCTAGGCACTGAATCTCTAGTGAGCTTCT--------CTGGTAGACAACCATTGACTTTATTGGAagtagaattttagaaaaatacaccTGATTTCACTCCATGAGCTTTTCACTTTGGGAATTTTGCTTCGTATCTTTTCACTGTCATAAATCCTAGCCTCAACTATATACTGAGTCCTGTGAATCCTGCCAGTGAGGCATCAAACCAGAGGCCCCAAACACACTTTTTAGCCCTAAACTTTGGAGTTTGGATGACAC-----TGAATTGctgtttctaaattttcattttttgaatttaaCATTCCCTTGCATGGCACTTCTGCTTTATTGGATGAGAGTT----TTCCACCAGGTTTTAAATACTGATATCCTATACATTGAACACTCATAGAAATATTCTTTTACACATTCCTAGCATAAAAACCACACAAAGCTTGTATATAATCATGGAGAAATGGCACACACTTACTTGGAATTACTTGACTTGAATAGCATGAAT----AATTTGAAAGCTGCCTGGGAATAAAGCATTAA

a score=16404
s chr3            98905802 564 + 160039680 GTCACTAGTGTGAGAGGACAGTTCACCCAATTGTTAC-CTAATTCCTACAAGTTGATTTTTAAAGGTATCCTCTTTCTAAAAGACCTTTCTCACCTGGATACCACTGATATGGAAGAATCCCTGGTCTTGAGACACAAAGCCCATGGTGCAAACTTTAATATACTGTTCAAGAGGGTGCAC--CTGGTGGAGGGCAGTAGAGCAAGCCCAGGGTGCAGGATCAAATCCAATCACCATCT-----------------------TCTCGT-----------------TTGAAACAGGTCACTGTCCTGTCCCTGAAAGCAGTCAGAGGAATTATTTACAGTATGTTGGCTAATTGTTCCCATACTGAGCACAGATGCTAAC-AAAATATCCTAAGTGGCATTTTGGTTTCTGGTCTCTATTATTAAGCAGTTGATAAATTACTATACTTATATCCTGCCAGTATAATTTCACTTAATTTTCTTGAAATTGCAACTGATTTCTGAAATATCTTAAGATAAAAACATGTTACAAATATTACAAGATACTATGTAAATGCTGGCCAGACAGTGACCTTGTAG--AGCATAGATATATTGCATAAGTGTAggaagt
s HiC_scaffold_1 108748406 579 - 233722169 GTCACTACTA-GAGAGAATGGTTCGTCCTATTATAAAACTGGTTCTTATAAACTGATTTCACAGGAGTTTTTGTCTCCAAAAAGTGATTCACATTTGAATATCTTTGATAC--------TCCGAGTGGT-----------TCCAGGATGCAAATTTAGGAAGGTTGTTTGTGA---TACAATGCTGACAGAAACCC-TGTGTCCAGCTCATCATGCAGGATCAAACCCAACACCCATCTAAGGACAGATGTTCAAGCCAGATCCCCGTCATATCCAAGGGAGGCTTTGTAGCAAGTCACTATCCCATCA-TGAGAGCAATCAGAGAATTTATTTGCAGTCTGTTAGCTAATTGTTCCCATACTGAGTGCAGATCTTAACTAAAATGCCTTAAGTGACATTTAGATTTCTGGTCTCTATTATGAAACAGTTGATAAATTACCATGCCCATATCCTGCCAGGGGGAT-----TTAATTTGCTTGAGGTTGCAGCTGATTTCTGAGCTTCCCTAGaac-aaaatgtgatataaatATCACAAGATGTAGGATAAACGCTAAAAAATACGTGACTTTACTGTCAGAAGAGAGACAGTACATAAATATTTGAGGT

a score=29338
s chr3            98913298 4188 + 160039680 [encoded data, 4585 characters]
s HiC_scaffold_1 108750336 3784 - 233722169 [encoded data, 4585 characters]

a score=65419
s chr3            98920961 2572 + 160039680 GCCTAACTTAAGCCAAACA--GTGACATCATCAGTATACGGGATGTATTATACGCTCCCTCCTTGCATCCTTGTGTATACCTCATTTTGTTGCTGTTTGTCTGTCCTACTCTATCTTGTATATGGATTT---TATGTGGCTTGTGACTTCACTTCCCAACACTTCTCCAAAACACCCACACTGTTGCTTGTAGCAGAAGAGTTGAATAAACATGATGGTTCACTTAACAT-----GTCATTTTTAACTTGGGAATCCCACCTTAAATGCTTTATTTTGATAAAAATAGTGAAAGGTACTGAGGGGGAAATGACTGAATCACATTGGTCTCCTTTGCAGAGGCAGAGATGTGAGGACAAAGAAA-------------------GGCACACATATGGCTTCTCTTCCTGACTGCGTCTGCTTCCATGTCAGGGAAAATAACCCTACGTTTCCTTGCATTTATTTTTGTTT---ATTATGAAAAACAAGGCTAAGCTTAAGATGGGTCAGGGTATCAGAGAGCAAGTGAGTAAGGGGATAATATTGAAGTACTTGAGAGTGTGT-------GGAGTGAGCAAGCTGGTACATGCCTTTCTTTCCtttt-------------------------ttaattttt---aaaaataa-----------CCAAACCTGGT--------AGAAATTCTT------------ACTTCCTACTTTCTTCCCAGGGGTT---------------------------------------------------------ATCTATGAGGCCATCCTAGTTTTTGCTTGCTGGCATTCCGCAGAGGGAGACA-ATTTTTAAAATCTCTTTAAAAAAGCTGATACTATGTCCACAATTCCATATGAAAACAGACTTAAAGACCACCAAAACCCGTATGGGCCCCAGAGCTGCACAGAGCCCTGATGAATGGATAGGACCACATTATAAGGGTCTCCAGAGAATAGGGCAAAAGTTACTGACTGTCTTCCTGAAATATACCAGCAAGAATGTGAGCCTTAATTAACGAAGCCCAAGGTTGATTTTTCTTGCTGCCTTTTTCTCTGAAAGACAAATAATAAGAAATGAATGAGGTTGGAAGCAAATGAGAACCATATTGGGAAAGTGAAACATAGTCAAACTTTTGGCTGAGCTGGTTGCAAAGAGCTAAAGTTCTTTAATCATCTCATAGAAGATGTAACCAAAAAAATGCAATTTGAAacacatacacacacacacatacacacatacacacacacacatacatgcacacacacatacacacacccaaacacactcacacactcacatatgcacacatgcacacacattcacagacacacactcccacacCCTCATTGTTTTTCACTGCAGATGAATCAGAATGGTAAGATGGTGGAGACAGGATCTGATGAGAACCATACCTGCTCTCCACCTACTTTATAAAAAGCCTTGGCAACCACATTGGGGAACCCATCTATCGGTTCTTATAACTTAAATGTGTACTGTACAATGTTCATTGACCCCAATAAGCCCCTACACAGCCGAACTTGGTCATGGGTTGGGCATATGCTAAAATGGTAGCACACTGAGGATCCAAATTTTTCTGAGAGACG-TGTTTCTAGAAGAAGATGAATCTGTTTGAAAATCAAAGTACATTAC-ATCTGAAAGTGGGCAAGGCCAACTATAATACGATTTAGATAAGTCTTTATTAGAAATAAGATAGCCCCTTACTAGTGAACAAATTGATAAAA----------------------------------CACAGAGA----------AGTTTTTCTTATGTGTGGGTTGGCCAGGTCAAATGTATACAAAGAACCCTCTCCACTCCCCTGTGACTCACAGCACTTC--AGTTTGGGGATTTAAAAGGTGTTATTGTCTTTGCCAATAAAGAGACAGAAGACA-----CATCTGTCTTGCTTTGTGGCAATGAAGGCACATGATGGTGATGGAAACTTTTCTATTACAGCCCCACTTAGGTTGATAGCAAATAAATACAACTTACTGTGAGAGTA-TTTTAATGCATCTTATAATATTTACTTTTCTTAAAGGG----AATGACTTAGCTTTCTGGTTTCCTTGTCTCATTATTTATTGTTCTCTAGGGAAGGGTGGAGTTCCTTAGCTTCTGAGTCT-TCTGGACATGCTCAGCTCAGTCTCTCCTTCTTTTGGGGAGAAAGTTAGTTGTTCACAGAGAGGA-----CTCATCTTGATCTCTTAGGGAAGACCATTTCCCACTTTCAGAGTCCAGAGTGGGTAAGCTCACTTGAGTGTCAGATATATATAACTTCAAGTGTGGCTTCTGGATGAAGCAAAGTGTAT-TTCCAACTTCACGTGCCAATTACTTCTTTTGTTAATATGTACAGAACAGAGAGGTGGGGGGTTTTAGTGGCTGTTCCTAGATGCCCTCTACATAGTTTAAAATGGCAAG-ATACTGAATGGAGAACTTAAAAAATGAAACTGTTCAGACCATGGCTTTCTTTTTTTTAGGTGACTGAACTTAGGGAAGACATtgctacagtctagagaggagtcacctaaaagtccatgtgga-caacggcttggtttctagattggtgctattgaaaggtggtagaaactgtaaaaga-aagacctaccacgaggtctataggtcattggaggtatggccttgaaggggattgttggac-----------cctgtctcttctttcacttcccagacacatggcaagaagttttgctctcatgcatgtt
s HiC_scaffold_1 108756389 2589 - 233722169 GCTCAACCAAATCAAGGCATGGTGACATCAACATCATAAAGGA-ACACAATTTAatctctccacat-tctttttttctttctcctttatctGTTCCACATCTGTACTGCT--GTCGCAtatatgaatttctttatttgcattttgagcTCATTTCCAAA----TCCCTACCACACCTTTATTATCTCCTTAAGCagaaaaactgaataaaga-aatggATGAGTTTCTATAAGTAGTCATTTTTGCCTTAGGAATCTCAGtctcaatgttttattttggtggaAATGACAAAAGAGACTG-GGATAAAATAACTCAACCATATCAGTCTTCTTTCTGGAAGCATAAGtgtgtagagaaaaaaaaaaaaaaaaaaaaacagaaggcaaaCACATGGCTTCACTTCCTGACACTATCTGGTTTCACATTTGGGAAAATAACCCTAAATTtctctgcctttgttttttttttttatcatgaaaaatgaCACTTAAAGTAAGATGTGTCAGAATGTCTCACACCAAGTAAATAAGGAATTAAAACTTGAGTGCTTG-GCGTGTGCAAATTGGGGAGCGAGATATCTGGTGCTTACTTTTTATTcccattaattataaaaataaaaaatttagccTTAGTGTTcctcaaaaataatttcagtgatactgaatattgttatcttcaaagaattGTTCagctagtattaatttcctattattttttttgaaattctgtatcattgtttttatccttttgttgttttatttttcaaattaaaaaaattaaagatcagTGAGATTATCCTAATGATC-CTTACTGGAACTCTGGAAagagaaacataattttaaaacct-------------GTTACAATGTTCACAGTttcatataaaaa-aaatttaaggatcaCCAAACCAGGTTTGTATCCCAAATCTTCTCAGAGATCTGATGAATAAATAGAACCACAATGTAAGGTTCTCCAGAGAGTGAGACAAAAGTTACCAATTGTCTTCCTAAAAT------GCAAGGATGCAGACCTTAATTAAAGAATCCCAGGGTTGATCT--CTTGCTGCCTTTTTCTctgaaagacaaataataaaaaatgaatgaggcTGAGAGCAAATGAGAACCATATTGGAAAAGTGAAGCATAGTCAAACTTTTGGCTGAGCTGCTTGCAAAGAGCTAAAGTTCTTTAATCATCCCACTGGAGATGCAGCC-AAAACACACaattccaaacacacacacacacacacacacacacacacacacacacacacatctccacA--------------------------------------------------------------------------CCCACACCCTCCCTCTTTGTCACTGTAGATGAATC--------AAGACGGTGGAGACAGGATATGATGAGAACCATTCCTGTTTTCCACTGACTTTATAAAAGGCTTAGGCAATCAGTTTGAGACATCCATCTATCAGTTCTCATTCTTTAAGCATTCAATGTGTGGTGTACAATGGTTACAA-AAGCTAATAAACAGCTGGTCTTGGTAATGGATTACAAATATGCTAAAACAGCAACCTATTTAAGGCCCAGATTCTTTGAATAgatgacttttttaaaagatgagaa----gtCTGAGCATAAAAATACACCACTATATGTGaatgtgaaa----aacagaaat----------------tttgttAGAATTAAA------TCTTATTAGGTAATGAACTAATGAAACAGGGATTTTCACCTGGAAAGGGCAGATCAACTTCACAGAGAGGAAGACAGTAGTATTGATGGTGTGATTTTAGGATAGTTTTAGTATATA-----------TTCCATCCTACTCCATCTTACA-CACTCCAGAGTTTAAGGATTGGAAA---TTTGATCTATTTAATAACAGAGAAATGGAAGACATATAGTATCTATCTTGCTTCATAG-AATGAGAGTAGGCAA----GTTGTGGacttttctaata----------------aattttaaataaatatagcatATTATGCGAATATTTTTTACTCAAATTATGGTATTTTCTTTGC--AAAGGGAGTAAATGGGTGAAATTTCTGACTTC----TCCCATTACTTCTCCTTTTGGAGGGAAAGATTGAGTGTCTTAATTGGCCATTATATGTGGGCATGCTCAGCTCAGATTATTCTTCTTCTTGGGAATGAAC------TTCCCAGAgagaaagcattttattttgatctcCTGAGTAAGAGATTTTCCCG-TCTTGGTGCCCAGTGATGGCAGGTGCATGTGACTGTT-GCTAGCCACGTACTCCAGCCTGGCCTCTTTCCGAAACCACAGGCATGTTTGTTCTCCACTTACCAGT---TCTGTTTGTCAACTTGTACAGGACAAAGAGG-GAAGCTACTTACTGGCTTCAGGCAACCCTCTTCCATGTGGTTT-ACATGCCAAGAAAACTGAATggagaatttaaaaatctta---gttCTGTCCTTGATTTATCTTACCTTATTTGTGGGAATTTGGGGGAGATA-CACAATAGTGTGATAAGTATTCCCC---AAGTCCCCATAAATTAGAGGGTTTGGCCCCAGACTCAGATTCTTGGCAGA-GTTGGAAACTTTAAGGAACAGGACCGAATGGGA-------AGATGACTGGTGGTGTAGCCTTGAAGGAGATACTGGGACCACAGTCttatcctctttcttcttctgcttcaCAGGTGCATGATGAAAGGTTTTGCTCTGACACATATT

a score=78865
s chr3            98935238 5037 + 160039680 [encoded data, 5710 characters]
s HiC_scaffold_1 108783262 5098 - 233722169 [encoded data, 5710 characters]

a score=35353
s chr3            98940978 851 + 160039680 GACGACAGGGACATC---CTTAGCTAACTCAGCTGCCAGTCACCGGAGAAAGGGGTGCTGGCCACAGCCCAGAGAG--GATCCCCCACAAGAAATATATCGTGTGCTGACACTTTTATGACCTGGACCCACTTACAAGACACAGGCTGGTGCACAGCTCTGCTTTCCACGGCCCAGCTTGACATCACATGCTCGCCCCGGGGCTGCCACTTGGAGTCAGGAAAGCCCATATATTTCCGTCTTCGGATAAGCCTAGTGGTTCTCGTCAGGTGCAGAAAGCCAATAAATCACCAGCGAAGCCTCGGTGTATCTATCAGTCAGGAGGCTTGTCATCTTCCAGGCCTTGATCCACATGAAAG-----GCAGATGCgggaggggcggggcggggcggggc--AGTGGCCGG-----GGACACCTGGTGTGCGCTGGGCACAGGGTCTGCAAATGTTCACAGCTCCGAAGGGCGGCGCGGGGAAGACCCACGCCCCCTCCCTC-TCTGCACGC---GCTTCCTTTCGCTTTGAAGTGCCGGCACTGGGGGAGACCAGGGTTGAACTAAGCAGGTCTTCCAGCCTGTGGCTTTTAATATTCATTTCACGTCCTCTTTTCTGCTACTTTGGGAGGGATGAAAGCTATAAA-GGAAGTGTGGGAATCC------------------AGAGGGTGACTTCACACCAGGGCTACCCTATCTTGCATCTACCCTTCCTCGCCAGGAAGTGGAGAAGAGATGAGGTCCTGGGG-GCGAGTCCCACAAGGCAGTAAAGAGCCTCTGTGTAGATATTTCACTTGTCCTGTCAGGGATCAGGATAGAGGATGTGAACTCTGATGGACTTTGA-CCACATCCTACTTACCTCTGCCATTGTCTCCCTTTG
s HiC_scaffold_1 108789100 843 - 233722169 GACTCCAGGTACATCAGCCTCCAACAACTCAGCAGCCAGCTCCGAGAGAGAAGG-CACTGGCTAGAGCCCAGAGAGTGGATCCCCCGCAAGAAATATATCGCCTGTTGACACTTTTATGACCTGGGCCAGCTTACAAGACACCGGCCGGTGCATAGCTCCGCTTTCCCTGGCCCAGCTTGACATCACGTGCTCGCCCAGGGGCCGCCACTTGGAGTCAGGAAAGCCCATATATTTCCCTCCGCAGATAGACCTAGTGGTTCCCGTCAGGTGCAGAAAGCCAATAAATCACCAGCCAAGTCTTGGTGTATCTATCAGTCAGTAGGCTTGTCATCCTCCCGGCCTTGATCCACATGAAAGAGGGAacgggagggggaggggaggggctgggtggggtggggcggaCGGACAGTGGACACCTGGAGGGAGCCGGGCCAGCGATCCAAAGATGTTCACAGCTC-----GGAGCCGCCGGGAA-CTTTACACCGCCTCCCCCGCCCGCCCGCGCGGCTTCCTTTCGCTTTGAAGTTCTGTGGCTCCG---GATTTGGGTTGCGGGAAACAAGTCCTCCAGCCTGGGGATTTTATTATTCACCTCACGTCGTCTTTGCAGCTACTTTGGGAGGAATGAAAGCCATAAAGGGAAGTTTAAGCGACCACCCCACAGCCCACGGGAAGGGGGTGATTTCACGCC-TTTCTGCCTCATGACTCATGTA--------------GGAGTTAAACAGAAGTGGGGACTCAAAGTGTCAGTTCCACTAAGC---ACAAAGGTTCTGT----------------TTCTTCCGGAGAT--GGAGTGGGGCTGTGGAATCCCAGGGACTCCGGTTCAAAT----CTCACGTCTGTTATTTTCACCTTGTG

a score=32723
s chr3            98949746 1252 + 160039680 CCTCTTCTGACTACTGGCTGCCATGCCATTCTCGTTTAGAAATACCTTATA-GAAAAGCTGTTTCTACTTCGGGTTTTTTCAACATTACACAGTACAGTTAGAAAATATTATCAGTGACTGTGACTACCATTCATTGGCCAAGGGCTGAAAATGGATGGCTGAAAATGGATGTTCA---GCCCTGaacaactgtactaaatacttatcatccttgctttatcggtgacaaaattgaa-gtacatataagtgatgctttctccaagattgatcagcaagtgacagagtgggacatgagctgactgcaccctggctctaaattatacactgctgctcaAGAGTCCCCCTGGATACATAAGCACTGTGAATGAGAAGGCTCTGTGCCTAAGAGTCACAAAACATAACAATGTGCCCCAAGGACATGGGTTTACCCTCCAGGGAACTGTGGGTTCCCAGCTCACTGTGAGCTGAATGTGTGTGTGTCAGGGCTTGTGTCACTGCA----------Tggtaatcatgcctgatcctcccaccccacagcagtgctgtgggaatcacaggaacaagagtgtgtgagggtgctttgtcaattgcaaagaac-acacaaatatgaactattattattTCCATCTGGGCTTGTCTGGGACAACTTCAATGAGGGCATTATAAATGATTGATAAGACTTTATGTGGTCTTTGTGATTTAAGGGGAGAACAAGGCTCAAGTCAGAAGATTCAAACCCTGGCTATGGAATGTTGGTTGCAGGATTCCAGACAAAGGGCTCAGGATGAGCGAATGTGGGTTGGGCTCAAGTCCAAAGTCCCAGTCAGCTTAACTTGCATGATTTTGGGGGTTAGAAAATGCTCTTAAATGTTGATTGTTATTTAGTTGTTTCTTGGGTATAACCAAAAATAGTAAATACTCATTTGAGTATAACAAAAAATTAGGAAATAGACATTTGAATGCTAAT--------aggcattgttctaagcactccgtatgctcccaccatttcatctttatagtattccagcaagatgaaaacagatacaggcagcatgacttttctcattcatttaatgaagaaaataagggttggagatgttaagatggttttctatggctacacttctactaagtggtaccgcttgga--ttcaaaccagtcattctgattcaagaAGAAAGAGGAAAAGATGAGAAGAGGATCAGAGAAGAAAAAGAAAAAGGATGGACTTCTGAAACTTGAGCAAAGAAACTAGGGAAAGACAGA
s HiC_scaffold_1 108794684 1183 - 233722169 CTTCTCTCAACTATTAACTGCCCTGT-attctcactttaaaatttcttacatGAAAAGGTG---CTACCTCAATTTTCTTTGCTATCACATATTATAATTACATAGCAATGTCAGTGCTGAAGACTCACAATCTTTAACTATGTACTGTTAATAAATAATCTCATTTGATCTCCCAAGGGCTCTCATCAGTA--ACTAA-----TATCAGCCTTGTTTTATAGGTGTTAAAGTTAAATATACAAAGATTAAAAGCCAGTCCCAAAATTAACCAGTGAGTGACAGAGCTGGGCCTAAACTCAGTCAGTCTTGCTTTTAAATGTTATACTGCAGCC--AGAGGTTCAGAAGTTACATAAG-------AATGAAAAAAGCTTGTGCCCAGGAGCCACAAAACTTGATACTGAGTTCCAA------------CTCCTTGATATACCCAATGGCACCTGACTC--------CTAAAT-TCTGTAAATCTGAGTTCTTGcctttaaaacagaaatagtcATAATCATCCCTGTTCCTCTTTACCCATATAAG-GTTCTGAGGATCACAAGACCAAGAGTATATGAGTGTGCTTTGTCAAATGTAAAGAGCTATACAAATATGAGGTATTATTATTTCCAGCTGGGGTTGTCTGGGCCTACTTCAATCAGGGCATTATAAATGATTGATAAGATTTTATGTGGTATTTGTGCTTTAAGGGG-GAACAAGCCTTAAGTCAAATGACTAAAACTCTGG-TATGAAATGTTGG-TGCAGCCCTCCAGACAGAAGGGTTTGGGCAAATGAACTGGGCACGGGCCCAAATCCAAAGTGCTAGTCAACCTAAATAAGATGCC----AAGATAATGAATTATTATTAAATGATGATTACTAT----TTGTTTATTGaacatagcaaagaa-aataaatatt--------------------------ggtgAATATTTGAATGCTTATTTTGTATCATGAGTtgttctaaatatttcatat--ttatatta-ttcATCTTCACAGTAGGTCAATGAGTTGAAAATCTCTATGAGGAATATGACTATTCCTATTTTCCaaatgagagaaataagaaatagagaATTTAAGTGAATTTTCTAGGGTCACAGAGCTAATAAATGATAGCACTTGGAATTTGAATCTAGTCATTCtgttacagaaaaagaaagaaaacaaatagaaatgga----ggaaaaggaagaaaaagagagga------aaactgaatggaaggga--agggaagggaaga

a score=16104
s chr3            98954991 799 + 160039680 AAAAAGACAACAGTCAACAACTTAACACCTTTGTCAATTGCTCCTTCATTTAGCCTTGCTAATTGAATTCTTATTCAATTATTGCTTAATGAGTTCTTATTTAGAGCTTTGGGCCTT-AAAGCTTGCAACTACTCATGGCTGTGA------CTCAAAATATATACAAATAAAGATGCTGTGGCACATTTCTCTG--TCTGTGTCTTTACATTATAATTTGCTCATTTTCctctc----tctctttctctctttctctctctctctctctctctctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgAATAATGAAAATCTGTATGTTGTAAAGAAAGCTGTTTCCATTTTTCTACCTAGAGTCCTCCTCCATCAAGCTCTTTATGTTCCCCAAGAAAACTTTATTACCCCAGGTTCTTCACACTTAAGTATTGGGCTTAGTTGTGATGGATGTCTATTCT-GATGTGAGGAGAGCTGATAACTGCATATTAATGAGGGTCATGAGGGAGCCACATTAAAAAGCTGTTGTAAACCCCAGTGGTGACAGCAATAAACTAGAACTCT-------------TCACAGCCAGAAAGTAACAAAATGTGGCCAAACCCACATATGGAATATTGACACTT--GAGGAAAAAAATTGCAAATATGTTCAGTAGGAAAGAC-CTGCACAGAAAGCAATGCTTAACTGA---------AGAGTCAAGGGGATGAAAAGAAAAA--GTATTCTGAAGTTACAAAACCACCCTTTGCAAGAGGAAGTAGAGAAGGATGCGGTAGCTCCATTAACTTCTATCCCATCCTCCATCT
s HiC_scaffold_1 108806728 716 - 233722169 AAGAAGAC--CAGCCAACAGCTAAATCCTTAAGTCAGTTATTCCTCCATTTCCCCTTGTTGATTGAGTTCTTAATTAAGCAGTAGCTTGTAATGTCA-------------GGGCCTCCAAACCTTTCAGCTACTCATGGCTGTGATTTTTACTCTAAATTTATAGAA-------TGCTGATACACATTTTCCCAGCTCTATGTCTTTacactgtaattctttcatttgtCTCATGAGGTCTCTTT---------------------------------------------------------------------------TGGGATTGATGAAAATCTGTTTTGGGAAAAAAcgctttttttccatttcctaacCAAATTCTTCGTTCATCAAGTTCCTTAGTTACTGCTGCAGAACTTTG-------GGCTTCCTTcc-------tagtgtgatttttttttgttattatctgtcaaagacagagaaagaagagataacCACATCTTAATGAAGTTCACATAGGAGACAAATTGAAA-GCTGTTGTAAACTCCAATGGTGACAGCAATAAGCTTGAACTTTGGAGAGAACTGACTGGCAATTAGAGAGTAACAAAATGTGATGAAACATATGCATGTGATACTGACACTTTAGAGGAAACAA---GCAGAGATTT---------AAGACTTTGCTTAGAGAGGGAGAATGAAGTGGCAGCCAACCAGAGTCCTGAGggcaaaatgaaaaaccaaatgctgCAGTTGCAAATCCAGTCACTACAAGAGGAAGCTGAGGAGAAGGTGGTAATTCTTTGAATACTGACCCCATCCTTCACTT

a score=15319
s chr3            98958941 313 + 160039680 aaaagaccaacgatttacagactccagcacaatATGCCAGTATGAACTATTGGGTGAGTTA--------TTACACACCATCTG--CTCTATGTACATGTGTCCTGCCAGCTTAAGCCCTAATAGCCCatatataaaatttaattaattGTACAAGTTACTGCAATAGCACTGAAACCTGGTATTCTGGGCATGACATACCCTAAATACATAGCAGATTTTGGAATAAATCAGTTTCAGCCCAAACCAGAATGCAAGGAAGAGACAGATGCCGTCACACTTGTGCCAAGTATATGAGATCCACCCAAATTTGAAAAGAGTTCAG
s HiC_scaffold_1 108807805 317 - 233722169 AAATGATCAGTACTTTGTAAA-----GTACACTATACAAATGTTAATTATTGGTTTGGTTGCCATTTGGTTACATAATATTCGTACCCAATATATATGCTTCATGCCAGCTCAAGCCCTAATAGCCCATACATAAAGTGTAATTAATTGTACAAATTACTGGGATAGCAATGAAATTCAGTATTC-AGGCATGACACATCCTAAATACATAACAGATTTTGGAATAAACCAATTTCAGCCCACATCACAATGCTGAAAACAGACAAATGCCTTCATACATATGCCAAGCAAGTCAGACCCACCCAAACACGGATGGAGTTCAG

a score=20652
s chr3            98965617 1211 + 160039680 GGGAAAGGTTGTTGAAGGAGCTGAGAGTGATATGTTGTTTGCTCTGCCACATGTAGCCATCTGCATTTT-CCAAGCTGCATCTCATTT-AAAGTTCCCTGCCCAAATTTTCCA--CTCTTTAGATCAGTATCTACTTCTTCCTTTTGGTTGGATTTTAGA-------------------TCAAG---CTTCAACCAATGGTCTTGACCCAGAGGCATGGGATTTCT---GAGACA-CAGGCATCTCTTGTGGGATGTTGGAGTAGACTAACCAGCAGTTCCACACACTGGAGATG-AGCTGTACCAGTTGGTGCCAAAGGCCTCTTAATAGGCAGCTCATGTGGAAACCATCAGTTCTGGTCTCAATCATTAGCTTATTCAAAAGCAGCCAAGTCTGGGGACCAAATCTTCTAGAGCCAAGAACAGACACACCACATGTTCCAAACCAGCCAGGA-ATAGAGATAGAGAGCCCCACACCCTTAAAGATTTTCTATGCCACC-----ATTCATCTAGCTGAACAATTCTCTGGGCTTGTTACATATTCACACCACAAATGAGATGAAATTGAGCATGGAGAAACATTATTTGCTTTCATTCTTATGAGCTTTTCAAAcagtggttctcaacctctggggctcaactcctttgtgggtcacatatcagatatcttgcatatcagatatttccattacaaatagtaacagtagcaaaattacatttatgaagtagctacgaaataatcttatggttgagggtcacaacaggaggaactgtattaaagggtcacagcactaggaaggttgagaatcactgATCTTAAATTCCACCCTCCTCACATCTTACTGCTCCTCCTGATTTAGGGTTAGGTTGCACTGGAGTTCAGCAGGTTCCTTCTCAATACCCC-----ACTTCTCCCTTTCTTCTTTGCTTTACCCATACTCTTGCCTCTGCCTATGATATGGCTGTCTGTCTTGAATCTGGTTATTTCCTACACTAAGCCCTTA---TGAAGGAGTCATTTGCTTTACTCCAAGAA--CTCTGGCCCCTCATCTCACTTTATCTTGT-TTAATGCCTACATTCTCCACTCACCTAGAAACTTTAGTTATCTGTCCCACAAagttatcttttactccaatgtaacaaaatgccaggacctaagtggc-taaaatgatgatggtggtgct--tgcttatgaatttcttggaatgactgtgctcagctgggtgattttGGATTCCCTACATATATTAGCT
s HiC_scaffold_1 108812383 1040 - 233722169 GAGAAAGCGTTTTGGGGG-GTCACTAGTGATATATTATTTTCTCTCCCAGATgtagaaatctgtatttttccaATCTGCATCTCATTTTACAGCTTCCTGCCCAAATTTTCCAGTCTCTTTTGGTCcatatctatttcttctttctggCTAGGCTTTAGAGTAGCTCCTTGGGAGATGTTCAGGGGCATTCAAACAATGGACTTGGCTGAGAAGTGTGGAATTTCCTGAAAGACAGCAGGCATCTCTAGTGGGTTGCAGGGCTAGACTGATCAACAATTCTGAACACTGTAGATGGAGTTGTACTGGTCCATGCCAAGAGTCTTTCCG-AAGCAGCTCATATGGAAACCATCAGTCCTGGTCCCATTCATTAGCTAACTTGTGGGCAGCCAAATCTGGGGACCAGATCCCCCATGGTCAAGAACAAAAGTACCACATGCTCTCAAACAATAGGGCTGTTGGGATA-----TTTCACAATCTCAAAGATTCCCTGTTCTCctaaaaaatgtatat---taaaaaattCCCTAGATCTTTTTAGTACTCACG-CACAATCAATACAAAGCTGATCACAAACCAGTTTACTTTACTTTTAGGAGTACAATCTTCCAAA--------------------------GGCTTCTTT-----------------------------------------------------------------TTGCatttatg-------------ataat----------------------------------ttataagttC--------------------------------TAAATACAATTGCCCTTGTCTTACCCTACTTCTCACAAGTTAGGGTCCGGTTGCTTAAAGATTAGTCTGATTCTTTAAGCAAACCTTGAAGAAATTC---------------CTTTACACATCCCTTTCCCTCTTTCTGGAACACTCATATCTTCTTTACTGCTAGTTAATTTATACAATAAACTCTCAACTTTAAGAAATC---TGCTTTACTTCCATAATTCCCTGGACATCCATCCCATTTTATCTCTTACTTATGCCTCTCCTCTTCACTAAACTAGAAGCCTTAATTATC--------------------TACTCCAGCCCAACAAACTATTcaaaacttagtggcttaaaacagaAATGACTTTATTAATTCTCATGACTCT-GAAGAATTAGTAGGTTCTCCCAGGTGATTCTT--TTTCCTGTAAATAATGCCT

a score=15537
s chr3            98975873  957 + 160039680 aaacaatccaGCCTCATGTTTCCTTTTAACCT-----ACCAAGGAACCCAATTCTGCAAGCATGCCTGTGCCTTCAGACCTTTGA---CTCTG--TTTGTCGAGGTCTTAGCTCCACCTAGTGGTCTTAT-TGACATTTTGCTTATAATGAATGA---------------------------------CCTACTGTTGGAGCAGGTTTCTTTTCTCTTTGA-------------------CTTCCTCGGAAGACTGAGGTCTGGCTGACTTCTCCTAGTGATGATACCTTTCCATTTTGAACTTTTCAGAAGTCTTGCCTTCTGGGGCTCATATTAACCCAGCTGGCACTGGCAAGGAAGGGGCTTTAGAAATGGTTCCTTCTAC------CTTCTGAAACCGGACACCACAGAACCCAGGAGGTTTCCCAGAGATATTTTGTGGCTGACTACAGAGACTGAGAGGTCAGGAATCCATTTCTC----------CTCCTCTCCTCATCCTCCGTAACAGT-----CTGCTGATGCTAACGTTTCTCTTCCATGTGCTAGGTCTCCACCTAAAATTTTTGTGTGGA-AAACAGTTGTGCTGTCAAAAATAATATGAAAGACTCTAATCTTTTTCCATTTCCTCTCATTTTTTTTTAG---------TAACGTTCATTGATT------------------GTCTGCTAGAACCATAATACACATCTTCTGGTGGTCACATTGAAGCTCTGTCTGTCCTTTCAAAGGAGGGAATCCTTCACCCACAAGCCCCCGGGGGTTCACGCTAAAAGTTTCCAGCCTCGTTTCTACTTTACACATGGAGAAA-ATGACTG-AGCCATTCTAGAAGTGACATTTTGTATTTCTGTCTCATTCTTTTAAGG----TGTTCTTAGAGATAAGAC------------TGAAAGCAAGTAC------------------------------ccatgggctttgtgacttcaacaacaacaaatgttgatttcccacagttctatggactggga----------aagctcc-------cctagctggtgaaggc--atttcctagttttcagaaaactgcatccttgctgaattctgacatgtttgtggggg
s HiC_scaffold_1 108823726 1105 - 233722169 AATCAACACAGACACAAGATTTTCTAAAACCCTCCGCCCCAAGGAACCCAGTTGTGCA-GAGTGTCTGTGCTCCTGGAGATCTCAACGTTCTGCCTTTGCTAAAACCTTGGCTCCACCTAGTGGTGCAATATGATGTTTTACACGTAAGGGGTGCAAGGTTGGGGCTGATGGGATAGTGGTGGGATCTCCTATTGCTGGAATAAGTTTCTAGACTCCTTGATTCGACTTCCCTCCAAAGTCTTGCTTTGCTGACTGAGAGCTGGCTGACTCGAGTTAAAGTTGGTGCCATACCACTTTGCAACTTTTAGAGGTTTGACTTCCTGGTGTCTGTATTAATTTATATGTTATTGGGAAGGGGAATGGCTCAGAGATCATTTCTTCTATTTACCACTCCTGAAATTGTGCATCATGAAGGTTAAGGGGGTTTAAGAATGTGTTTTCC------TCATAAAGGCTGAGCTCTCAGAGGCCCACATCCCGCTGCTTATTCCCTTCACCCTATCCTTTTTCAAACTCAGCACTGCCAATACtacttttcctctattttgaac-AGAGTTTTACCTGAGATTTTTGTGTCAAGAAGAAGTTATGCTATTAAAAACAATATGGAAGATACTAGTC-ACTTCCATTTTCCCTAATTTTATGCTAAGTCAAGATTGATAGTTTATTGATTTGTTGAGTTTTAAGAGCCATCTGCTAGAATTATAATTCACACTTCCCGAGGGTTACATTGAGGTTGCATCTGTCAACTGAAAGGAGTGTGACCTTCGGGTGTAGAAACGTGAGTCAGTATTTTGGAAGTTTCC------------ACTACACATGTGGAGGAATGTGAGTACAGTGGTTCTCAAA--GATATGTTG-ATTGTTGCCTCATTCTTGCAAGGGAGTTAGTTTTATTAACAGGTCAACTGAGTCCTGTGAAAGCAAATCTGGTAGTCAGTTTATGGTGTTATAACAAATATCATAGAATGAGTGGTTT---AAACaacaaagctttgtttttcaCAGTTCTTAGGTTAGAGAGTCTAAAATGAAGCTGCCAGCAAGCAGAGTTGATTAAGGCTGTCTTCctgatttgcaaaca----ttttcttgtTATACTCTTACATggtggagagag

a score=96411
s chr3            98990215 2803 + 160039680 GTTGGGAAGACTGAGAACTATACTGGCTTATAGAATCCTTACTCTATCCTCA-AGGGTAGGAACAAATTACCACTAGCCAACTATATCAGACAGGCCTGAGCCCTAGTCCAGTG------AATAACATTTTCCTGACAAGCAAACTTTCTTGGAAATTGTATGTAAACTGTCCTGTTTTTTGTAAATTCTGGCAACCAACTTTGTATT-TGTTTATTCAAATACTACACACCGCAAGGACTAGGAGTTCCCTGCCACTGACTGAGGGCTTCCCTTGAAAGG-----GGGTCCTTTAATAAAAGACCC----------------------------------CTCTGAATTTTTAGTCCAGCCTACCATCTCTCATTCCT-----------------------------------AATCAAAACTGGCTGAGGGAGAGTTGATGCCTAAGGCGCATGGGGAAATGGGTGAACCTTTGAGAAAAGTCAGAGGCACGGAGCTCCTGGGGAG---AGAGGTGAGCAAGGT-GAAGAGCATGATGGGAA-CTCTTTTGAGTTGAGCATAATGGGCAATGCTATCCTTTAGAAAGCATTAACTAAGGTCAGATTAACAAGTCAACACTGAAACTGTATCCAAACAAGTCTGCCTAATAGTGGGCAGAAAGCAGAGACGGGGCCAGAGGAGA---GTCCACCGGCCCA-------TCCAAAGC--TCCCGGCTCCATAGA-TGGCAGGCTCTGGGAGCGTTTGATAAGGTGAAGGGAAACTGCAAAATTAGAACAGGCAACGGGTACTGAGAGGCC-------------------TGAGGCAGGCTGAGC--GCTGAGGCACTGTCGGGGAAAGAGGGTTTGGCAGCCTGACTTCCTGTGGCTGTAGCCAAGGCTAATTAGTTTGCAGTGTTCTGTGTGTGCCCGAATGGAAATGATCCCAGTACTGAGAGGCACGGGCGGAGGGAGGGGGTGAGGAAATCAAAAACACATGCACAAA--------GAAAGGAGGGGAAGGGATTGGTGGGAGAGGAAGGC-----GAGGGGGGAAGCCTGTCCTTTGGCTACATTTTCTTTTCTTTCTTTCTTTTTTTTTTCCAAGGGAAGGCTCTCATCATTCTGCTTCATGACCAGTAAATCACCACCAGAGTCTTGTCCATCACATCTCACATCTGCAGCAGAACTCATTAAACATCAAAAGGCCGGGCCTATCAGTTTTGCTTAGTTAGAAGTCTGACTTACCAGAGGTCTAACCAGGGAGGCGTTTGCATGTTTTTAATAATAGCTTAAGGAACTTCTTAGCACCCCATAAATTACTTAATGCTACAAACTCTTCCTGAAGGTCCAGCCAGCATGTGAGAGTGGTTGAACCAACCCAGACCTGCCCCCGTGGCAATGGCTTTTTGGCGGTCACATTCCGGGAGACCACAGGGTGTTAGTTAATGCTTTAATTCATAATTCCGAGCCTGCTATT--------ATTACCTTGCTGGGTAAGTCTTACTTGGAATGTGGAATGTTCCAGAATGCCTTTCTTTGCCATTTCTGACTCACCCTGTAAAGAAGTAACCTGGGT-GACCATTACATATG---GT-CTTTAGAG------------GTCTCTTGGAACAGTGAGAAATGGTTTAGTTGAGAGATAGGTTAACAACCTGAGACAATAAAATAAGAACCTTTTCTCAGTCTTGAAGGTGTATGCTTGGCAGATGTATAAAtcaataaatatttgttgagtgcctacAC--TGCTAAGTATAGACATAT---GAAAGGAATTTTGACATCTACTC--CCTATAAAGAGTCTGTGATAGTTCAGGAATGTATAAACATTTTGAGCTTT---AGAAATAAAAACCCAGGCTAAAATTTTATCCACCTGCAACCATTACAAGTTTTTTTTTGTTTATTTTTTCAAATTAAATGAATTTTTCTGTC----TTTAATACCAACTATTATACTGTGTCCAACTT---AAGGTTGCATAGTATAGAAATTGTAAAGTATCATAACTATGGAAATCATGACTTTTCTAAGAAAAT-CAAGGTAAAACACCTTAACCCACACCTCCTATCTCTACCCTATTTTTTGTTTAGGAAAGGCACAGAAG-TATCTC----AGCTCATTAAAGTCTGT-----------------CATGTGACTAAGAGGGTAATGCATTTTAAGAAAGATGAGCATGGTATTATTATTAATTTATTACTTTGGTTATGCTAAAAATTAAGCCATGCTTATGCAGATTACAGAACACACTTCCTCGTG---------------TAAGAGACAAAATCTATCCGAATAAGAGAAAGGACAGGGTATATAGAGGTTTCT-ATAGTAACAGAAAGAGAACCTCAA---ATACAGAGATGAACACAGAGG-CTGTCTTAGCAAAATGCTGCATGTACCTAGTCCAATAGAcacagttaatcacagttaatcacagttaatcacagAGGCAGAGCATGGGGGACTTCCGCGTGCTCCAGCCCTCCTGGTGTTGTTTGCAATTGTCAGCCTCCC-CAGCCTCAGATGACCTCATTGTGATTGTCATCACCAGACAACTAATGAGCAATTACTATATGCAGAAAACTATGTGTGCTTTCCTAGATTCAAACATGATCTCTATTTTTCAGCA--GCAAACTTTAGAAGTGACTAGATGGATATGGGTTGATGAATGGACAGATGGAAAAAAAGGAAACAAACAGAAGATGAGAACAGCCCCCAGTCTATACG-----TTCACGTGACAACACCAGTTTTAAGGGCTTCCCACAAACTCAAACCTCAAACCTCACTGTACTGCAAGGG-----------AAGTTCCTTAATCGATGTTGAAGGGGAAGAAGAGATTCTTATGCTAATGAG-AGCATAGATGGCCAGTACAACATGATCGATGCTTTGGAAAGATGTCAAAGATAAATATGGGTAGAGGGATGGAAAAACAGCTGAAG-GGGTCATATCTCCAAGGGGAGCAGAAGGGC
s HiC_scaffold_1 108843690 2870 - 233722169 GTCAGGGGGACTCAGGACTATATTACACCAGAG---CCGCACTCTGCCTTCATCGTGCAGAAGCTACTCAGCTTCAACTTGGTGCATCATGCAACTCTAAATACTTATCCAACATTGCCAGATATAACTTTTCCTAGGGGGAGATCAATTTggat-ttttatgtaaaatctCCTACTTCTTG--AATATTGGCAATTAATTTTGTACTCTGCTAGTTCAGATTTGGTCCA-----AGAGCTACCAGTTTACTGCCTTCGATTCAGCACTTCCACTGAAGGGTGAAGGGGTCCCCTGTAGGAAGAGCCTCTGTGCCCGGGCTCTGCCAGAGCTTCGCTATCTCTCTCCATGTCTTGGCT--CTTCTCTTctcatattcatctcagatgctatTCCGGTAAGTGTCAAAGAATGTCAGTCAAAATTGGTTCAGGAAGAGTTGATGCCTATAGCTTGTGGGAAAATGGGTTAACTTTTGAGAAAAGTCAGAGGTGCAGTACTCTTGGGAGGTACAGATATGAGTAAGGTAGAAGATCTTGGTGAGAAACTCTCTTGAGGTTTGTATGATGGGCAATATTCTCTTTTAACAACCATTAACCAAGGTCACATTAACAAGTCAACACTGAAACTGTATCCAAACAGTTCTTCATATTAGTTGGGAGAAAGCAGAGAAGGGGCCAAAGGAGAAAAGTCCAGAGGACAAAACTGACTCTAGAGCATTTTCCTCTCCACCCACTGGCAAGCTTAGGGCATATTTGATAAGGTGAAGGGAAATTGCAAAATTAGAACTGGCAACTTATACAGAGAGGCCCAGTGCAAGGCTGCAGGCCTGAGGCAGGCTGAGAAAGTTGAGGAATTGTGGGGGAAAGAGGATTTGGCAGCCCGACTTCCTGTGCCTGTATCCAAGGCTAATTAGTTTGCAGTGTTCTGTGTGTGCCTGAATGGAAATGATCCCAGTACTGAGAGGCATGGG-----------GGTGAGGAAATcaaaaacacatgcacacacacacacaaaagagtgGGGGAGGGACTGGTGGGATAGGAAGGCAGGGTGAGGGGGAGAACCTGTCCTttggctacatttt-------------------ttttttcaagagaaggCTCTCATCATTCTGTTTCATGACCAGTAAATCACTACCACAGCCCTGTCCATCACGTCTCACATCTGCTGCAGAACTCATTAAACATCAAAAGAC-GGCCCTATCAGTTCTGCTTAGTTAGAAGTCTGACTTACTAGAGGTCTAACCAGGGAGGAGTTTGCATGTTTTTAATAATAGCTTAAGGAACTTCTTAGCACCCCATAAATTACTTAATGCAACAAACTCTTCCTGTA-GTCCAGCCGGCATGTGAAAGTTGCTGAACCAACCCAGACCTGCCCCTGTGGCAATGGCTTTTTGGCGGTCACATTCCAGGAGACCACAGGGTGTTAGTTAATGCTTTAATTCATAATTCTGAGCCAGTGATTAAAAATGAATTACCTTGCTGTGTGTGTCCTCCTTGGAATGCATAA---TTCAGaatgtctttttttg-tgtttctgagTCACTTTCTAAGGAAGTAACCTGGCTGGACTGTTATATATGTATGTGCTGTGGAATTGCATCATCacatccctcagagcaacaagaAATGGTCCAATTGAGAGATGGATTGATAACTAGGGGCCATAAATCAAAA-----CGATAAATTTTGAGGTCACACACTTGGCagatatataaattaataaatatgtgtTTTGTGCCTACTCTGTGCTAGGtacaga-atataaaaaaagaaattctgacattttttttatttttagaaagtctACAATATTATGGGCACACATGAACACTTTGaaggttaagaaaaataaaaatggagtatAAAATTTTGTCCACAAGCACCCATTCAAAGTTAGT---------TCTGTGGGGATTTGGTACATTTTGCTATAACTGTTTGTTACCATCTAATCTATTGTGTCCTACTTCTGGAAGAGACTTAGTCTGAGA---------------------GGAAGCCAt-agtagagaaagaaaatacagggTCAAAAA--TTGATGCATATCTCCTAACTCTCATTTATTATGCACTTGACAAGGCCCCAGAGGACATTTCTAAGAACCTGCTAAGTATTATTCCCCTACACAATAATCCATGTGA-TGTGTGGCTAATACACGTAGTGAA-------------GTTATTGTTAATATCATACTTTAATTGTACCAAGAACTGAACCACGCTGACAAAGA-TAAAATCCAAACTTCTTTTTGAATTCCCCTTCATGTTAAAAGACAAAGTATACTT---TATGACCAAAG----------CAGAGGATTCTCAGGGAAGTAGAAAGAGGTGCTAGACTCACATGGAGGTGAGCATGGAAGTCTTTCTCAGCAAATCAGTGTATATGCTGAGTGTTAAAGAAGCAATTAAC----------------------CAGAAACAGGG-ATGGGAACATTCTGAGCTTTCTACTAGTGCTGTGGCTGTTTGCAATTATCTGCCTCCCAAAGACTCAGATGATCTCATC---ATCGTCTTCAGTACACAGCTAATGAGCAATTACTATGTGCAGAAAATTGTGTAAAGTTTCTTAAGTTCAAAAATGACCTCAATTCTTAAGTGGTGCACAATTTAGGAAGGAGTGAatg--tatggatggatggataaacagAT-------------------ACAACTTGATAGCAATACTTAATATGTATGTTACTTTCACATGTCAGATACTATTTTAAGTGATTCCGCATAATGCCTTGCTTAACCTTCACTGTCAGGAAAGGGACTTAAGGAAAACattatttaatctattttgaaatt---GAAGATACGCATATGCTAATGAACAGTGCAGATGAACAGCAC-ACAAGACTGATGACTCAAAAGGAGGTCAGGCAtggata-----aaactgatggagaaacagGTCATGTGGGTGATGTATCC-ATGGAAGCAGAAGAAC

a score=34771
s chr3            99015954 1430 + 160039680 AAGAATGTCATTTACTAG---AAAATAACTGA---TTATATGAAACCCAACACTA------------TGCA---CATTGAATAGATACCAA---GAAAATACTCTAAAGTAAAT--AGGGAACATTTTGTAAA-----ATCTTTCATAGGTAAATATTATGTTATGGCATTTA---TAATTTCTTATATTGCACATTTGACATCAACCTTA-AATATTTAAAACACAAGAACTC----attaaaatattttataaattatGA-TTATACACACTTAAAT-TTTCTTATTTTTCCAAATATCATCCAGTCTAGGT--CCATAGGC-TAACTTTTATCTCTGTCTAAATTACATATCCTGAAAATTGCCTAAGTGTTTGCCTTTGACTTTACTAATAAAAATGCTTCTGAAAGTCACCGTGAAATTTAAGGATAAATAAACTTGTGTCTAATTCTTTAAAAGGTTATATTCATGTGAAATAAGCTTCAGATATTTTTGCAGCCAAAATGACACTATAATGATTTTAAATCAAATAAAAAT-TTAAAAAGATGGTTGGGTGCATTTTAATTCTTAGGTTACGATCCATGGTAATCTCATCTGGGAAGTAAACTGTCACTTGATACTCAAAAAGAGTAAGGTTTCATGCGTTTCTCACACATCCTCTTGCCCATTCGCTTGTCATATCCCATAATTCAGTTATCACAATGCATCCTTAACTCATTGTTTGAAATCTATACTTAATTTTATGCACTTAAGACAACCTCATGTTTTCTTTTCTATTGGGCAAATATCAATTTCACCATTTCTGGTTTCTATCAAGGGGTGAGGTCAGATAGGAAGAATGAGGTTAGATCAGTGTCTTCT----TCTAATG----AAAAAACTGTCTTTGATTATTTCAGGGGGTTTCTCTTTCTTTA---AGCTTTA------TCCCCAGTACAGCAAAAGAAACAGCACAAAGACAGAAAGAAAGGAGGTAAGAAAGGCAAGGGAAGAGATGGAGAGGAGAGTAAGGAGttttgatgaatga-tttacagacaatgaaagtgcccattgtaacatatcatctgttgt-agatgtgattgcttttgataagcatacagtccagcagtcaccacttacaactagactatcagacatttccctgcacccaaaagttttctcatgcactgttgtc-----tagttccttgaacttccagcccaccaacaaccactaataca-attttgattttataactttgcattgc-catgatgtcccctaaatcc-actactcagtacgtagtctttgagattcttccacttgcagtagcatgtttgagaggtattcatggtgtggaatgcatctttagttcattctattttacagtttaaaaaaattcctttgcatcaatgtaccacaacatt--ggcttattcattAGCTAACATTTTCAA-ATTTTCACTTTATAAAAATCATGGATGTAGATATTATAATCATCTATGTATATGTAT
s HiC_scaffold_1 108875534 1392 - 233722169 AACAATATTACATACTTGTTTAGAGTAGTTGAGGTTTGTATGAAACTAAGCACTAAACTGAGAAAACTGCGGGTCATTATCTAAATTTGAATGTAAAGGTGTTTTAAAGTTATTCCATGTAATATTC---AAATgccaatatttaatatttaagtgATGGCTTATAAAACTTAATTTACTTCATTATATTATTCACTTGGCATcaactttataaaatttaaatgacaagaatttttaaattgaagtattctataaattataaattttacctacttaaaaatttctaattttcccAAATATCATCCTCTGTAAGTGAAAATAGGTGTGGATTTCCCATTCTCCTAAAATATATAACCTGAAA-TTGTGTaagttcttttacttttttttactaGTAAAAA-ATCTCTGACcgtgaaaataaaatc-aattataaaTGGACA-ATGTACATTACTTGAAACCTTTTTATA-----AAACCTAGATTCAG-TATTTTTTAGCCCAAAG-------ATGTTGACATAAaggcaaataaaaaaattaaagtgctgGTTCTGTGAATTTTAATTCTTA-----TGATCCATGGTAACCTGATCTTGGAGGTAAACT-TTACTTGACACTCAATAAGAGAAAGTGTTCATACACTTCTCAAGTGTCCT-TTGTTCATTTCCCTGTCATAACCCATAATTCAGTTATCACAGTGCATCCTTAATTCATTACTTGAAACTTACACTTCATTCTCTACACTTAAAGTAACCTCGTGTTTTCTTTTCTATCCAGCAGATATCAATTTCACCATTTCTGTTTTCTATCAAGAGGTGAGGTCAAATAGTAAGAATGAGGTTATATCTGAGTCTTCTTCGATCTAATGGGAAATAAACCTGCCttattttgtttcaaagaattttttttcttttcattagctTGACTTAATTCTCCAATATGGAAAAA---------------------------------------------------------------TCAAGTTTATTGAAGAATAACTTTCCATGCTATAAAA----CCTTT---ATTTGGCACGTGTGGTGAGATGTGAC--------ACTCATACACAGTCCAGTAGTGATCAC-CACAATCACAGAATATTACATTTTCCTTCAACCTAAA-TTTCCTGCTGCCCTTTTGTCATCAAACCTTCCCTAAACTATTAATCCACAACCAGCTACTAATCTACATGTTGTCCTTA-AACTTGGCCTTTTACAGAATGTCATATAGGCCTAATTGTGCAGAATatagaatttgagtttttttcatttgttata-tACACAGGAGATTGATTAATGGTATTGCAGGTAtctgtaattaattttattttataactgagTTACATTCCTTTGTATGGATGTACCACCAGATTTGAGAGTATTTAT----AAACATTTGAAGTGTTTTCTCTTTGTGACAACTGTGGATAAAACCATTATAAACATCTACGTGTGTGCAt

a score=28506
s chr3            99017755 1707 + 160039680 TTTGTTCAAATATCTATTCCTT--------ATCAGTAATTAAATTCTTATTCATGTGCAGGGAAATTGCCAATAAGTCATGAGGGGGAAAAGTAATAAACTAGAGGACCTGCTTCTAAATCCTAGGCACTGTTCTTGACCACA---GTACTTTTGTTCGTCTTGTAAACAAATCAGGAGCAGTGCATTCTGGACTTTCTGCAAGAGGTCTGGATAGCATCAGGATTCACAAAGCCAGAAGTGAGCCACTCTGTCTTGGGC-----TGAGATTCTGCTGAGGAGTAAGT---AGCAAAGTGTACAGAGAAGCGGGTAGAAGACCAAGT-GCTCAGATGCATGGCTCACGTGCCTGAGACCACAGGGTGTGTTCAGGAAGCTTGCAGGGATGCTTGGAGGTTGTGGCACAGGGATGGGTGTGAAAAGGGACGTGGGGAAGTGGGACAGTTCTCAGGCAAAGGTTAGAATTGTGAGATCATTTTAACTTTCTATTCATTCTTGCCTCTAATGAATTGTGTTCTATTGTGAGAGTTTGTTTTGATCAGCTAACTACCTCAAGGTTAGAAGGTTTAGACTTCATTCTGTTGAATATATTGAATC----TTAATTGCATGTTAATCAGGAAAAGCAGAAGG-CCACATGTGTATTTTAGGAACAGTCTTTTATGTTCATACATACATGTTCTTGATGTTTGTCAAGTTTATTCCTGATAAAGTTGATCTGAGAGGGAGAAGACATGGGTTTAGTACAGAAGGGATAAGATTTTAAGACTCATCTAGTCTAAAATTAGACCACAGTCATTTTGTTGTGTGTGTGTTATACTGAGTCTCTTTTTAATCCAGATACAGTCTGGGGACCAGACTTCTTAAGACGTGGCTTGGGTGAGAAAATGGTTACTTTTTCCAACTATGATTTGGACTTTCAAAGAAAAAACATAGCAGCAGAGTT-CCTGCAAAGAATCTTTGTGGGTCATCCA----GAACAAAACTTAACATTTTGAAATACTAGAATTAAATCT---------------ATGTGA------GACATGGGTAGCTAGAAATTAAACTAGGAAGTTTCATCACAT---GTTACTACTAGAAATCAGAAGG--AAGAAAAGGA-------------------------------------------------GGATCTATAAAATGAGCAAAAGAATGGGCTGTAGGGAAATGCCTG-GATTGGTACTGGAGAGATGTGCTGTCCAATAAACTGAGCTAATTTTCAAAGCCTAAGCTGTTCAACCAAAGCTGAGGCAGCTGTCAACAGCATGGGAGGAGTCAGACTGTGACTTGCAAGCTGAAC-----CATCA-----------GCCAATCTGGTGGTGGAATAAATTCTATAACATGGAAGTGTCTACCTAGACCATTTAGCTGAAAGTAGCTCTATTGTGTGAGTTAGTTAAAAGCTAAAAGCCACTTCACCCACTCTCTAGAGAGTAGCCCCAGCTGTTGTACATTCCCTTGGGGTTGTAGCAGCAATGTGTGTGGTGTGAGAGGAAACAGTAGACCTAGAGCACCTGCTTCTAGATCCTAGCACAGTCACCAActagcttcaagttaaacccgaatttccttaactattgagtagaaattgagcacttaccatgctgccattatgaatgacct-atgaaagtaaggattCCTAGTAAA----GGTTAGTCAGATG---AGTAACTCTGACCAATGAAGGTAGGCATCTATGGAGTAGTACAGTAGCCACAAGTGACTGAGCTGTGGCTAGTCCAGAGTGAGATGGGCTGCCAGAGCTGATACAGAAGA
s HiC_scaffold_1 108884937 1625 - 233722169 TTTACATAAATatctgttctttcttcctttatcaaTAGTGAAATGCCTATTCATGCATAG----------------CCATGATAGACAAAGG-----------AGTGTCAG-TTATAATTC--AGCCACAGCCTTTGCCCCCACGTGCATTTTGATTATCCATATAAAAAAAACTTG---------TCCTCAGCTTTGTGCTAGACATCAGGACAGTGTTGGGAGTTACAAGAGAAGGAATGATAAACTCTATCTAGGGAATAAATGAGACTCTGTAGGTAACTAAGTGACAGCAAGGTATAGGAAGGTGAATGTATCAGGCCTGGTCACTTGGGTATAAAGAGTACAAAGCTGAACCCATCTGGTATTTTCAGGAA------AGGGTAGAATAGAGTTTGAGGCA-GGAGATATGATAGGAGAGGAATCTGAAGAGGTAGCACAGAGCTC--------------------------------------------------------TAAAATG---------------------------CAGACATTTGCTCCATGGTTAAAAGATTTGGACTTCATTTTGCAGAGCATATT-AATCAGCATTGAGAGTGTGTTAATCAGGATA-GCAGCAGGATCAAATGAATGCTTTAGGAAAA--CCCTTGTGTTCATTTCTACATGTCCTTAATGCATGTCTGGAGCTCTCCCTGAGGAGTCAATCTGTTAGGAACAAAAGGTGGGATCAACAAGGAAGAGACATGATCTTCAAAATCACCTCGTCTAAAATTAGACTATAATCATCT-----ACTGAGTACTACACTGAATTTCTTTTCATGACAGATCCAATCTTGGAA-CAGACCTGTTTGAACATGACTTGAGTGAGAAATGAGGTGCCTTTTCCAAAGATGATTTagatttcaagagaaaaatcacaGCATCAGAATTGTAAACATAGGGTCATTGTAGGCCAGGTAGACTGAGCAAAACTTA--ATGTGAAATTGTTAGAATTAAGTCTGAGAGTAAATCAAGGATGGGAATTCATGCCATAGGTAGCTGGAAATAAAATTAGGAATTTTTATCAAATATGGTTACTGTTGGAAATCAGAAAGACAAGAATAGGAATTCAGTTGCTTTCTGGAAACAGGACTAAGAGGTTCAAGGGTGTTCTTTGGACCTCTAAAATATGCACAATCATGGCAAACAGGGAACAGCACGTAAATGGCACAGGGAAAATGTGCTTCTCCACAGGTCTAGAT-TTTCTTAGAATCCAAGGTGCTTGG-AAAACCTAGGACAGCTGCTAAAGCCATGAAAAGAGTTAGGCATGAGTTCCCAAACTGAATATGCACCTCACTGACACTGAGGCCAGTCTTACGTAGTAATGACATTTATAATGTGGTTAGGTACACATAAACTACTTGGCCAGAATTAACTGAAATGTTTTAGTTAATTAAAGG-TAAGAGGCGTTTCACTTA----CTAGAG----------------------TCTCTTCCTACAGCAGTGGCAGCATATGTAGTATGAGGAGAAATATGGAACCAAGAATACTTTATCCCAAGTCCTAGATCAACCAC--------------GTAAAC----ATTTACATTAACATTGATTA-----------------ATGTGATAATTACTAATGAGCTAATGAAAGTAAGAATTCTTCATAAATAATTAATATTCATATGTTAATTAGTGTTagtcaatgaaaataaaagtctgGAGAGGTATA-AGTGGCTGTA------TGAAATCTAACTAGTCTGAATTGACATGGACTACTAGAATTGGAacaagaaa

a score=55009
s chr3            99020786 1346 + 160039680 ACTTAGTATCATTGGATAAGAGGTTATCAAATCTAT---GAAGGTAAGAGCAGACA---TAACATCAGGAAACTGATCT----GAAAGTCCCCTTTGGCTGCAGACAGGCAAGGGTGCTTTAGTATTTCAATGTTGCATGTTTCAGTGCTGCATGTGGACCTAGATGGACGGCCAGCTTTCAGAGGACCCTATTATCTGATCCTGtaaagatatgatgcttaggaggccaaggtcataggtttgttctctttgtgggtcacttcactttgctccagcccatgcctcagacctgccccctgcaacctcagctggctgccttgtaaatacacttaggctca-------aataatacaggagcatgtgataggaacaggacacatctatcattact---agggcagcagctgaaaacacagtctgcaccatcagtgaggactgtcagtagcgtG--CTTCCAACTTAGCATAGCACTTTGTACAGGGG--CTCAATTCAAGGCATCTATGACTAGCACATGCAGACCTGAGCTCATTGACCTGGGTAAACTTAATAGAGCAGCAACTCTGGGCACCATAGCTTCTGCACAGAGCAGAACACAAGCAGCATTCA-TGGGACTTCAGCCTTTTCTAAAGATAGTTTTGCCAGAGAACACATGGGGCCTCCTGGCATGACCTAGAGCAATTGCTTAGACTTGGAGATATGAGCACCTATCTCTTGATTGACCTGTCTGCTGTCAATGTTTACGTCCACATGCGTATACGAAGGTGGTATGTTTTAGTTCTAGGCTGAAGCTCAGTCCTATGCTCTTCGCTGAAGCACTGATGACAGAAAAGCTGGTCTGGAATCTCCAGCTACACAAATAAATACTGCAGCAAGGCCTAACAGGAAGACCCTCACTACCCAATTTCTTCCAGATGGCAGTGATGGATGGCTGTATGTTTATGTTTACTTGGTTTCCCAGGTGACTGATGTCCTGGTTTCCACTGGTCATGGCTTGATGAGCATTTCTT-AAAGATGTTAGCCACCTATTCCAGCTGCCCAGCTCTCAGCCCAGTGGTATATCCCACATTCAACATTGTCAAGAGGATATTGTGCTTCTTGGATGTCT-TGTTAACTCTTCACTTACCAATGGTTCTCTAATCTCCTTATAAATGTCTGGGAGTAGCAAAGCAAAAAGAAAGTAAAGAAAAATGAAGAAAAATTtatggtatagagaatattgtctccctcccctaagatttctgcaccttaatcccaagaatggatagcatgttcaccttctagagtgaaggagaattgagattgcagatagagctaaggctgtcaatcaccaggctctaacaaaaggcgatgattttgagttgccaag
s HiC_scaffold_1 108887002 1325 - 233722169 ACTCAGTGTCATGAAATGAAGTCTCCCCAAACATGTCTTAATGGGAAGAGAAGACAGCATGACACCAGAAAATTGAGCTTTGGGAGACTTCTTCTTGG-GGCAACCGGGCAC------------------ATGGTGAGCATTTCAACGTGGCATATGGAGCAGGATCAGGGGCCGGCTTTCAG-GGTCTCTCTTAGCTGAGTCTGTAAGGATATAGTGTTTAGAAGGCCAAGGTCATAGGTTTGTTCCCTGTAGGGGTCACTTCAGTTGGCTCTGATCCATGCCTCAGACGTGCCCCTGCCTACCCCAGGCAGCTACCTTGTAAATACACTTTGAATCATTTGAGGGACAGGGCAGGGACATTTGAAGGGAGCGGGGCAAATCTATCATCACTTCCAGAGCAACAGCTGAAAACACATTCTTAACGAACAGACAGGACTCTCAGGAGGAGGGTCTTATGATTTAGCATAGCACCTCATAGAGTAGATctcaaataaaaacagtttttgCTGGCATGTTATTATCTGAAGTCACTGACCAAGGTGGAGCTGGTAGATCGATA-TTCTGGATACCATAGCTCCTAGACAACGCA--ACACAGGCAGCATTCACTGGAAATCCATTTTTTTCTAAAGATAGCATTGCCAACAAACACACAGAGCCTCCCTATATG-CCTAGGAAGATTGTTTAGACTTGGAAACACAAGCACCTGTTTCTTGAGTGGCCTGTCTACTAGTAATATTTATATCTACAAGCACAGAGAAGGGTGGTCTATTTTAATTCCAGGCTGAGATTCAGGCCCATTCTCCTCACTGAGACATCGCTGACAGAAAGGCTAGCCTGAGATCTCCAGCTACACAAATAAATACTGGAACACAGCCTAACAGGAAGACCCTCACTACCCAATTTCTTCCAGATGGCAGTGATAGATGGCTGTGTGTTTATGTTTACTTGGTTTCCCAGGTGACTGATGTTCTGGTTTCCACTGATCATGGTTTGATGAGCATTTCTTCGAAGATGT--------------AACCACTCAGTTCTTGGCCCACTGGTCTATACTACGCTCAACATTGTCAAACGGTCATGGTACCTCTTGGATGCCTAAGTTAACTCTTTATTCATCATGACTTCCC---TCTCCTAGAAAATTTCCAGAACtagcaaaacaaaattgaaatata-aaataccataaaaatcTCATGGCAGATAGAATAATTTCCTCCAC-----AGATTTTCAGATCCCAATCCCCAGCATTTGTAACATGTTT-CTTTTTGTGGCAAAGGGGAGTAAAGGTTGCAAATGCAATCAAAATTTCTCCTCATCATATTTTACAAGCGGGAGATTATCCTGCATTATCCAG

a score=41862
s chr3            99022931 2550 + 160039680 TCTTTATTATTTCTTCTCAGAACTCTTCTGTCCTCGCCTCTCCTGTAGCTCTGGACTGAGTTAGTCTATCAGTTACCTCTTGTTGTTACT---------GTTTCTGACAGAGGCTAAGGGCTAACTCAAGATTTC------CATCTT--GCTCCA--CAGCCTCAGA---ATCCACCTCCTAAGAGAGATGCTCTGATAACATCTCTCCTGCTGCAAGACCTCCAGGTGCCATTTCTTGCCTAGGGGTCAAAGGCTCTCAAGTCCTTTGAAAGGTATGCAGCCTTCCCAGTCCCTCTTACAACCTTGAGCCTTCGGTTCCCTCCTCATCAGACTTTCCCTGACTCTCCTTTTTGA--GCCTTTTTAATCTCTGTAAGCCTACTCTCTCTTCCCTTTCATCTAGAGAGTTCTTTGC-TCTTTTAAGGTTCGTTTTCACCTAATACCACTTTTGTAAAGCAGACTCTGATCCTTTCAACAAGTTAAGCAATCCCTTAACTGTCGTCACTTTGTAATGGGAACTGCAGAACTAAGGATAAAATGTGCATGAATTTTTGTTTACTATTCCTGTATGCTTGTCTCTCCTCTATCTGTGAAGGGGTTTTTATTTCTATGACAGATATGATACATTTTGTTACTTCATTCTCCATTCCTAGAATATACA------------CTTGGTATAAAATATA---CTTGATATTTGTTTGTACTGCCATAAAGAAACTAATTAATAAATGTTATAT----------------------------TTTAAAGTTGTCACCAAGAAATTTCAACATACTTTTTAGCTCCTGGGTTAAAGGATCCTAGGATGGCCATTCTGTGATGTTACATATTTAGTGAGTCTTAATTACATAGGTAGATTATTGAGCAACTTCATATTTATCCTGTAAGGATTGAAGGATCT----TAATATGG----------TTAAAATTCTTAAAGGCTGGGCACTCATAAACTAGGACTCAGATCAAA------CCCATTCACCAGCCCAGATGTGTATTTCCAAAAGCTGAAAA--------TTTTCATTTTTTTTGTCTTTCATTAAAGCATTTACCTTCCTTCTTAAAAGATATAAGTATGTAGA---------------TAGATAAGGAtagatagatacattcatacatacatgtatacatacatacatacatactt-----atacacacacatgtgtatcatgcgcataagggattattatctctgttgCAGAGCAAACTGATCTAACAAATTCTATTTGAAGAAGAAATATCCTATTCTTGTTCAAAAAGGGAAAGTCCAGTTTTCCTCACTTTCAGAAATTTAAAGACTATGAATATACAGATTATGATTTTTTCTCCAATAAG-CACATATTT-TATAAACTCTTGGAAGTTTA---------CTGGACAAGTTGTA-----TTTATTTTTCCTCCTTAAATATCTGTGTCTTATAACAGAGAAAACACTGGCATCTCTTTGCTTGCCTTCATCATAACATG-TGATGGCTGTATGACATATTTCCTCATGTTTCTTCCAGAAACATCTGCATGTGTCATTCTCAGTGGAATGGC--TACACAAAGT--------TAGTGCTGTC-----CATGT------------------CTTGGCAAGACGACAAATGGGATGGAAGCTTTGGTTGACTCCAAATTTAAtcttccttccttccttccttccttccttccttccttcctttctttctttctttctttctttctttctttctctctttcttcacctttctttGATATTCCACAGCTAGGGTTTAAGAACAATGTTTTTTTATTATAGTGCTTTTC--ACTTTTTGCCACAGCATTTGATAAACAA---ATCCAGGACTGGGATTCAAATGTGAAAATGACTTTCCATGTAAAAAATGGATTGTTT--AGAGGCATAGAGAACTGACAGTCTAAAAGAGGTCTTACTGGAAAAATTCTTCTTCTATTTGGAGTGCCAGAGGAGATCCTGTCTTGACTCCTGAGGACTGGTAAGG---CCAAGAAGGCCACACAGTCTTAATTGAAGATCTCTTAACTTAATTGAGATTGGGTTTCAATCCTAGTCTTGGGAGAAGCCCTATCTCTCTAACCATCTCCCTTGTCACTGCAGAAATCTCACTGTGGCCTGCTGGTTG------------AGAATAAAGGTCCCTTACCATGCAGGGCCGCGCTTCTGATCCATCCTATATGGTTTAAAAGAGAATCCTGTTTACTCCTGGGATCCTTCCATGTGTTCCTGATGTGTCATGAAATGCAACAGAAATAATGATCTTCACCTGAAGACTTGAGTATCAGAGCAAGCCAAGTGGAACAGGTGAGCTCAGGCTATT-------------------ACAGTCTTACT------------GGCCAGCTTG-----CTATGTCATAACTGTCTCAGTG---TTAGAAACAACAGAACAGTGTGTCTATTCCCATCACTCTCCCAGT---TTCACTGGAAAC------------------CAACTTCTTCTGA---TGCTGTGTCTCTCTGTAGTTATCTTTTACCTTTGCTATTATATATTTGAAAACACAAAGCCTGCTGTGGTCTTCAGTAATG-------------AGGCAGCATCACACAGTTAAAAAAAGGATCCTTAAAAGATAACTCAGTTCAGGGAGAAAGTATAAGGCACGTACCACCTCTCCAGCC-TGTAAAGAAAATCTGAATCATGGAATTGTCAGCCATTAAGCAGGAGATTGACTGCAGGGAAACCAC
s HiC_scaffold_1 108890094 2479 - 233722169 TCTTTATAATTACTTCTCTGATCTATCATGTTCTCTCTACTACCCTAGC-CTGGACTGAGTTAATTTTTCA--TATCTCTTGCTTGCACAACGTCCATAGCCCCTGAATGAAGTT---TGCTAATCTCACACTTCATTCCACATCTTCTACTTCAGTCACCCTAAGATGGATTCACC--CTAAGATGGATTCTCCCCTGACATCTCTTCCACCATAGAACCAGCAA-TAATATCTGCTGCTCAAG-----------TTCAAGT----TGGAAG---------------------------------------------------------------------------TCTTTGATGGTATTTTTTGTCTCTG-AAATCTATGC-CTCTTATTCTTTACCTAGAgaactctttttatcttttaatagttGTGG-CACATTTCACCCCTTTCGTGAAGTCTTTTCTGATTCCTGCAAGAATTTAAGTGATATCTCCATTATTCCCATCATACTATGTATACTGCAGAGTTTAGGCTGAA------------TTTTGGTTATTTGTTCAATATGCCcacct-tctttcatttttga----gtttttg-----atgaaaaattcaatgaattttgTGTCTTTATTCT-------TAGATTATataaactaaatatattttggtaTGTAATATATTACTCATTATTTGTTTGTATAAGTGtgaataagtgaataaa---atgtTATGTCAATAATATTATGGCAGTAACccatgtctttaaaattatttcaaaggaaTTCAGTCACACATTTCACATCCCAAGATATATGATCCCTAGGTGACTTTTCCGTGATGTTACACAAATAGT----TCTAAT---ATAATTTGATTATTGAGGAACTTCACATTTATTCTGTAAAGATTCACATATCTGATTTAACAAGTCACTTTTGACTTAAAATTCTTAAAT-CTAGGCTCTTATAAAACAGAATTCAGGATGGGTTTTTTCCCACTCACTAGTCCA-ATAT-TGCTTTTAACAACCGAGGTGAtgccctttgtctttttttttttttttcaggaaagcaTTTAGC------CTTCAGAtatatagatagacagacagacagacagataataGATGAATATAGATAGGTAAATAGAGATGCATATATATACA-GTataattaattatttctgtgatagaTATAAATGCATG------GCATAATGAATTGTT---TATATTGCAGATCAAAC--ATCTAA----------TTGAGGAAGAATT-TGTTATTAATtctcagagagaaaagc---------------------aaaatta-----tgTGAAGCTTAAAATAATAATCTGTGAtctgacaaaataaatatttatagattcttttggaaatttaaaataattatttgcttAGCTTTGGCTTTTCTATATTTCCTACTTAAAAATCT-------ATAACAAA-------TTATTATTTCACT-CATGCCa-cataataacaaaattttatctGTATAATATAT-----AGTGTGCCTTTCTAGGCTCTTTATATTTATCATGCTCAATAAAATGATAGTACACAATGTATTACTATTAGCTCCTTCACATTTATGTGGCTTAGGTAAATACACTCCTGGTAAGGAGACAGAGAGGACATAACCTCTGTCTGACtccaaat-------------------------------------------------------------attttgtgttttct--------------------aatacaataaaataagagt--aaaaaaattgttttatttatatagtgTTTTTTTAACGCTTCTCTTTAGCATTTGATAGGCAAGAGATCCACAATTgagatttaaaag-gaaaatgatccTTCTTGTGAAA---GGATTATTTTAAGAGTCATGgaaaagtgaaaatgtaaaaggaaCTTTATTAGAAAA----TGCTTCTGTTCTGGGTTCTA-AGAAGTGCCTATCTCAACTCCTAGAAGCTTGCAGGGGGGCTAAGAGGGTTAGACAGTCCTAATTGAGGATTTCTTAACTTAATTGAGGTTTGGTTTCAGTTCTAATCTTTGGAGAAACCATATCTCTCTAACCATCTCCATTGTCAACGCACAAATCTCACCCCAGCCTGCTTGCTGAGAAGCACGAGAAGAATAAAGGTCTCTGGCTATATGGAGCCAAGCTTCTGATCCACACTATATGGTTTAAAAGAAAGTTAAGTTCACTCCTGGAGTCTTGCCACATGTGTTTGATGTAttat-aaatacaatataaataaagatcGTCATTTAGAGAGGTCAGTGTCTAGGCAAGCTAAGAGGCATAAATTGACTCAAGCTACTTGCCTCCCTGTGTCTCCAGATAGTTATACTCAAAGAATTATACACCAGCTGGGCCCTCCATGTCAAGA--ATTTTAGGGCTTTTATAAACAACTGAACTG-----ATATTCCCGCTAGTGTACCAGTCAACTCCTTAGGAACCATGTGTGAGTTTGAGAGCAACTTCTTCTTAAATAGCAGGTGCTCATTATGAGAAACTTTCACAGTTATTATTA---GGTTGACAATAT----CGTATTTTGGCCTTTTGATTTGATATATCATTCAAAAATAGCATGACAGAATTAAAAGTAG---CCTTAGGAGAGGATGTGGTGATGGGAGAAAATATGAGGAAAATGCC------CCAACCAAGCACTGAAAATCTGCACCATGGAAGTGGCTAGAATAGGACAGTAGGTTGAAACCAGAGAAGATAC

a score=56076
s chr3            99030049 1759 + 160039680 ttatataggtatagatatatagatacatagatatacagatatatGAGAGTTATGTTGTGATCCTTTAATAAATAGTAGCCTTTAA-GACTCTTCCCACTTGTTCACCTCTTAGAGAGGGAACTTATGGGGA-AGCTTATGGAAGTACACATACTACGCTGAAGACACCATCTCCTTTGCTAGAAAGAGACTGGAAATAGCCATAAATACTACTGACACAAAGCTGAAATCATTTACAGGAAAAAGCT--GTGGCA--------------GTGTCCTCCATTGAGACGGTT-----GGGTCCATGATCACCTGGTCCTGACAGTGAGGATGTGGAATGGGAGGGAAGAGCAAATTCCTTGCCTTCTTAACCACTGC--TTCACAGTCTGCAAGCTGCAGGCTGAGGGATCACAGCCA-CAGGCTGGGGATGAAGGATGCAATTATCTCCCAGCCCTTTGAAGCTCTGGCCCAAGGGGTTTGCTGTCTCTATCACATATGATTGGGACAGCAACGTCCTCTTGCAGAAGATGGAATCCTTTGTACCCCACCCTCTGTCTGCCACTGGCAAAGAACAGGAAGTGGGAAGAGAGGGGCAGCTGGTCTCTCTCCTCTTCATCCAATTTCACACATTAGTTTTTTAACATTAATAAATTGGTTACATTTGCCCTGCATTTGGCAGCCATGGTTTCTAATAACACTCTGATCCCTTCAGAGAACTCGAATGACTGGCATGCAGTGAGCTCTGGTTGCCTCCTCCCCCACTCTCTGCTGCCAAAGGTCCTGTACATTAGCAGAGGTCAGATGCTTGCCTGGGCTGGGGCAGTCTAGGACAAGGGCCATGGCTTCAAGGCACTGTCACATAGCTCAAAGATTTTCCCCTCAGAGAGAGAACAGATAAGTTTTAAGCCCAGGCAATGT-GCAGCTTTCTTCAGCTGTCAATCCTACCTGGTTTGCATATAGATTGAGAAAATGTGTGAGATTTGACCACAAGAATCAGTCTGGAGAATTCAAggagtgggggtgggggtagaggtaggggtggtattgggggtagggtgggggtgATGGAAAAGAAAAAAAAATGTGTGATGCAGATGTGAGAGATGTCTGTGTTGGCTTGACACCGCTGCCTTTGTGAGGCTGACAGAGTCTGGGGATGCGGAGCCTGAATAAAGGACAGTGTGTAAAGGCATTCACAGTTCCTTCAGGCAATCATTTTTGCCACCAGTTAGGTGCCTGAACGATCCCTGAGCAAGAAGAAGCCCTTGAACAGAAAGTAGATTCAGAGTCAAGGCTAAACATACCTTTAGCC-------GCCAGCCAAGGAGACAGTAAGCTATGGAAGTAAATTCAAGCAAGCATCAGCTGGTCTGGAGCAGATATGGTGATCAGGCACGGGAACTCTTCAAAGAG-AAGATATG----GAGTAACGACAGAAAA-----------------------------ATTTAGTTAAATCTAATTGGTGTGTTT-----ACCCCTATTTGAGAGAAAAGAGTGGTTTTAGATACCACA---AATGTATCAGATCCAGTTCCTACCCAACTTTCACAACTCAGTCCTCGAAGG----GTATATGGCAGGTTGCAATCCAGGA-ATCAGTGGTA-TGATATGTGTCCCCTAAGGAACAGGTTACATAGGAAAGACTGATGGAGGATCTGGGTCCAGAGATTGCTGCTGTAGGATACAGTGGATAG-ATGGAGTTGGGCAGAGGTATAAAGAGGACGTTCCTTGGTGTAATTTGTAGTACAAAAAAACAGGCTATCAAATAGAGGGAGAGAGAGAGCGA------GACAAAGGAAAAGAAGA
s HiC_scaffold_1 108895323 1743 - 233722169 TCATGTGGGTGTTtgtatagaaat---taaataaaataatgtataatatGAATGT-ACaattctttaataagtggtggcAGGTAATGTGTTTTTTAATTCAGTCACCTTTTAGAGGGCACATCAATGATAACAACGTACAGAGAAACAGACATTATTCTGAA----CAACCCTCTTCACTGAGGAGAAATGACAAACAGCCAAAA--------GAAACTAATCT-AAATTATTTACATGACAAAGCTAAGTGACAAGCATGCTGTACATGTGGCAGTCATTGAGAGAACTCttacttttcccttctcccttaaTCATAATAGTGAGAA-----GATGCTGAGGAGTCTAAGATTCCC--ACTGTTTGGTCATCACATCTCACAATCTGCAAACTGCAGCCTG-GGGATTGCAGCCAACCAGCCAGGAATGGTGGATACAATTATCTCCCAATCCTTTGAAGCTGCAGCCAGGAATATTTGTTGTCACTATCACAAATGATTAGGACAGCAACGTCCTTCTGCAGAAAACAGAACTCTTTGTACCCCACCCTCCTGCAGCCACTGGAAGGCAGCAGGAAGTGGGGAGAG-GAGGCAACCGGCCCCTCTCCTTTTGGTCCAATTTCACACATTGGTTTCTCAGCATTAATAAATTGGTTACATTTGCCCTGCATTTGGCAGGCCGGGTTTCTAATAACACTCTGATCCCTTCAGAGAACT-GAATTGCAGGCACGCAG-GGGCTCTGATTACCTCCTCCTCCACTCTCTGCTGCAAAAGGTCTTGCACATTAGCAAGGGTCAGACACTTGCCTGGGCTGGGGCAGTGTAGGATGAGGCCTATGGCTTCCAGGCACTGTCACAAATCTCAAAGATTTT-CCTTCAGAGAGAGAACAGATAA-CTTTAAG-TCAGGCAATGTGGCAGCTTTCTTCAGCTGTCAATCCTACCTGGTTTGCATATAGATTGAGAAAACGTGTGAGATTTTACCACAAGAATCAGTCTGGAGAATTcaagggggtggggtgggtggaaagggaatggc-------------------------------agagaaaaaaatgtgtgatGCAGATGTCTGAGATTTCCATGTT-GCCGGACTCTACTTCTTTTATGGAGCCTGCAGACTTTGGGGATGGAAAGCAGGAGTGAA-AACACTGTATAAA-GCATCTACATTTCTCTGGGACACTATTTCTT----TTAGTCA------TGAAACTTGCCTGGCTAAAGAGAAGACCTTGAATGGAGATGAGACCCAGAGTCACAACCAGCCACAGCATTAGCCTCAGTGGGCCAGAGAGGAGAAAAGCAAGGGGAAGAAATGAGTCCTTGAGAATGGTAGCTGTCCCAGAACAGACTCAGGAATCAcacaaaagga-----agaggagaaagaaatgcaacaagtaaaaaaaaaaaaaaaaataggaagagagggaaagaatagATATTTAAGCTAGTCCAGCAGATATTTTGTACCAGCCTGTGTCTGAAAGAAAGgagttcttttatgttttatacagaaTCCTGTAGATC-------------ACTCTTATTACTTGGT-CTCACAGGTCAAATATATGACAAAGTACAATTTCGGACATCAATATCATTGAGGTGTGACaaagaaaagagatattatg-AGGGAAGATTTGTGAAGGAACAAAGTGTCATGATTGCCCTCAGAGG-----GTGGGTAGAATAGAGCTGGGCAG-GATATAGGGAAGATGCTTCTGAGTAACGCTGGTAATACAGAGAGGAAAG----CAAAAGGAGCAACCAGATGAACAGATCATTAACAATGGAAAGGAAGA

a score=85994
s chr3            99044088 3570 + 160039680 TCATTTTGTGTGGATGAGTTTCTGAGTGT---TTCCTAAGAGTGCGCCAGTCTTGAGCTGTCACTCTCCTTCAAGCTCCAAACCACTTAGTCAAGCAATGGGCTTTAGCTCTTGGTTGTCTCCCTCCTGTTCAAGTGGGGTGGATCCTGCCATCCAAAAGAATTCAGCTTCTGGGATTCTTGGAGAAGAAGGTTAAGTTGGCTGAAG-TTAAGGTCAA-------TTCTATTTGCTTCCGGGAAACGCTTATGACAGAATAGAAGTAACAGAATCAGGAACCTGTGCCAAGCCTAACTACACACGTTACTGTCTAACATTGATTGTTGTCCTCCCAACTCATTATGTTGGACCTTAATACCTA---------GCAATCAAGTCTGAACTAGTTAGC-TCTTGTGGCTGGGGACACTGGACAATTAAGTATC-------------------------AGAAATGATCTCAACCCTACCCACTTGACACCTTTGAGCTCTAAAATAGGCTCTACAGGGTTTCCACTCTCAACAGCTCCAGGCTGAGGCATAGTTGGTGCCATATCATCTAAGAGTAGACTGTCTATGGATCTCAT-----GAACCTGAGCTTGAAAATTAATCCAAGGATAAAGGAACAAGCCACT-CATCTCCATACTACCCCAGGGCTCCTATCAATGCAGCACCAACTTTGTAGTCCTTTGACTGAGTCCCAGGAACTGCTGCTGCT-CATCAAAACAGGTGCCCCCGGCGTGACTCTCCAGCCTGCAATTCCTCCAACACTGTCACGTCCAACTAAGGAGGTTTTTATTCCATGTGCCCGTTTGCCAAGACTCATATAAATCAGAGTGTGCACTTTGCGGGGTTTAGATTTGATTAATTTTTTTTAAATTTAGAAGCTGCATGAATAAAGTTTGAGATTAAGTGTGCAGAGATGTCCAGGAGCAGCCTCCCCACTGGCCCACAGATTGAGATGGATGAGGAGCAATAGTGGCTTTGAGCTGCCCATAATTGAAAAAGTGTGTGCCCAAAATATCATATTTATCCTACATTTCTGCAAGAGCCATAACTCTACGGCCTCCTCATAGAGCCTCATTAAATGGAATGTCTTCAACTTTCA-GTTCCCAAATATTCTCCATGTTGGTTATTACTTATATAACAAGGTTAAGAATGTGAAGCAAAAAGGG-ACTGAGGAAAGAGAAGAGAAACCCTGTCCGTAAAAGGGGAATAGTCCTTAGGCTTCTCCTTGAAGGATCAGCATCCC-----------------------------TAAACAATGGAAGGGCTAGCAT-GACCACATAGGTCTCACCCATTAGCCCTAGAAGGCCGTGCTTACAG-GACCATGGAG----TATCTCAAGGTGTCCAGCACAGAGCCAGGACTGCCAGGTGCCCAACACTGAGTTTGCCTTCATGTCGCAGTCTGTCC--------------------CTAAAGCTGTTCAGCATGGTGAATATGAGCAGCAGAAGTCACACTGGAAACAAAGCGTTATCTTCATGGGGAGATCACACTCCCAGACATCTTTGAGCCTTGG--CTTGTCAGTGCCACACCCAGTGG-AACTGAGAACTAACGATTTTA-------TGAGCAGTCACACAGCAGTTGCTCTGTGCCGAGCCATA-TGTATGCTGTGGGAAGTAC-AATTGGATCTGAGAGACACTCTGTGAACTGAGGGGGTATATAGATATGGGGACTACAATCTCACACATGGCTGTGAAGTTTCTGCTTGA----CAAAAATGTTAGG-------ATTCACACCTCCCCCCCCCCC-------------------------------ATCTACTGTTTGTCCCACCCCCAAAACCAACCTCTGTCCTGTCTCCTTCAACC---TTGTTTACTTAATACCTTTTGTTTTAACTGACAGGATACAGAATGTGAGATATA---CACTGTAGATTAAAACTTGGAGTTAACATCTCGCCAGCAATTTACCTTTGTCCCTTGATCTTTTTAGTATACTGAATCACTGACTCCTTAAAGG---------CTCTCTAGTGT-------TTTGTGTGTGTGCATGTATTCCCAATCATTACCTATACACAAATAATTCATAGAGGACATTACTAGTTTTAGGCAATTCCAGATCTATAAAAACTGAATTTCAATGTGGATCATAAATTATACTGAAGTATAAAAGTGCTGGCAAGAAACTTAACATAAAATTTTATTTTCACCACAGGTCTGTTGAGCTTGAATAGAGGTCACTAATAGTAG------CGAAGAGCATTCTTTTCAGAAAAGAAAAGGGGGTCGGTTTTCCTTCTATATTTTCTATGGTTGTAAAGCAGGCTCTAAGGGAAAGATCATGGTGATCAGTGCTTGCTGGAGCTT-TGGAGCTG-CAACCTCGAGAACTAAGGGACAAATCAATACACACCTGGCCTGATGTGAGGTTCACAAAGGACAGTCCGGAGGAATAAGCACAC-AAGGGTAACTGGAGAACTGCCCAAAGTCcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaTCACCCTGAGGCCCAAGCGCAGGGATCTGA-ACATGATTTTGCTGTAGGTGA-CAGCTGACCCACACGCTTAGTTAACACTTCCTAACTAGTAGTGAACCTATGTGAAGGACATGTGTCCTTAGTTAACACTTCCTAACTAGTAGTGAACCTATGTGAAGGACA-TGTGGGGCTCATTGGACTATTATCTCCTTTTACTGATAGACTTATAGTTTCATAAAATATAAAGTATAGCAAAGCCAAGTCATCCTCTCATCATTTCCTTAATTTCTCAATCATCTTATTTCTAAAAAAAAATAATGAGAAGAAGAACTTGAGAAAAGACAGGCTGGCCTTTCCTCCCACATTTCCTTAGACTTCCAAGTCACAGCTCAGTCCTCACCTGCCCCGGCACTGAAATCCTCTACATGCCATGAAAGGCCA-ACATGGGATGCTTAGCCAGAAGTCTAGCCACTCAAATCAGGCTAGGTGAGTAACAGA------TCATCAAGGGAGGCTTTTATTCTGCATCCTCCAGAGGATAGAAGAATATCCTTGCTCCACCTATGTGTGTGGACCCTCCTGCATGGCATGCAGTTGAGTTTGTCCATGGGTGTGGACTCTCCTCCATATTGTATAGTTGAGTTTGTCCACAGGCATAGGTCCTCCTCCATATTTTGTAGTAGAGTTTGTTCAAAGGTTTAGATCCTTCTATGTAGTTAAGTTTCTCTACCGGGTGAAGAGAACTAC-TCAGAGATTCTTTTCCTAGAAGCTAAGAGCCTAAACATCTGTGACTGATTAAAGTTAATATCTCATTTCTAATTCCATTGATTCTTTGAAAAGAGCAAGTCGCAGAATCCATGGCTATTCTTAGCAATCCCGCCTCCTTTCCCACTGC--------CCCTGAAAGAGGGAGGAGGCAGCAATAGGGATTCTAGTCAGACCTGCAGCCGGGATTCC-ACCTCCCTAGAGTCCACGGGGCTCCAACTTCTAAGTGCATGCCTGTGGTCTGATCAGCACAAATCTGCTCTTGGTTCTTTCCCTTCTTCCCTCTTTCATGTTTCCAATCC------------TAACCACTACCAGTAATAAGAAGTCTCCTTTCCTTACCCCAGAA--CCCTGACTTCCACATCTGAAGTGCTTTTTACCTCCCCAGTTCTTTAATCATCTTGTGGCTTAGTAGGGAAGCCTCTCTACAACCTTCC
s HiC_scaffold_1 108908349 3402 - 233722169 TCATTTTGTGTGAATGGGCTTCTGCCCGTATTTTCTCCCAAGTGCTCCCCTCCTGAGTTGGTATTCTACCCTGAGTCCTAACCCACTTAGCCAGCCTGT-----CTCACTCTGATTAATCCCTCTCCTGTGCAAG-GGGCAGTGCACTGCTG-CCAAAAGGCTTCAGCTTCCAGAAATTGTGCAAAACAAACTTCAGTTTCCTGGAGATTAAGGTCAAAACCAAGTTTAATCCACAGCAAGAGAACACTTACACTATAATAACT----CAGAGCCATGAACCTGTGCCTTGCCTAACTACTTGC--TGTCATCCTGTATTGATTGCTGCcatattcatttattatattgagacTTCTTAGAGAACAGTGACCGCAGTTAAATCTGAAGTCATTGGTACCTTGAAGTCCTGGGTATTGGGCAATTGAAAATCTTTCCAGAAGATGAGCTCCTGAGCTAGAAATGATCCCAACTTCCCTTCCTT--CACCTGT-AGTTATGAGAAAG-------------------------------AAATCTGTGCACACTTGGTGCCATTTCCTCTGAGATTTGACTCTCTAGGGTTTCCATCACGGAAACCAGGACTTGAGATTAAATCTAAGGATGGGAAAACACACCAGTACTTTTCTGTGTTCTCTAGACTCCCTCCTTAATAGAACAACAAGTTTCAAATCCTATAACTGAGTTCCAAGAGCTGCCACTGCTTCTTCAAAACAGGGTACTCTGATGTCTTTCTCCAGTCCTCA-CTCCCCCAACACTGTCATTTCCAACTAAGAAGGGTTTTGTTCGGTGTGCGTGTTTGCCAAAACTCATATAAATCAGAATGTGCACTTTGCAAGGCTTAggtttgattaatttttta-aaatttagaggcTGCTTGAGTGGGGTTTGAGATTGAGTGTGCAAAGATGTTTAGGGGCAGCCTCCCCACCAGCCTTCAGATTGAGATAGATGAGGAGCAATACTGGGTTTGAGCTGCCCGTAATTGAAAAAGTCTGTGCCCAAAATATCATATTTATCCTGCATCTCTACAAGAGCCATAATTCTAAGGCCTTCCATTAGGGCTTCAATAAAGGGAATGTCTTCAACTTTCAGGCTCCCAGATATTCTTAGTGTTGGTTATTACTTACAGAACAAGGTTAGAAATGTCAAGGATGAAGGGTACTGGGGAGGAGGAATAGGG--tcagtcc-tcaaaggaaaatgatCCCTAGGCTTTTC--TGAGAAATCAGCATAAAACTGCAGAAGAGCAGCATTTGTCAGTGAGTGAACAACAGGAGAGCAAATGTAAACCACACAAATCCAGTCTGCTAATGTCAAGAGCCTTTGCCCACAGTGACCACAGCAGTCCTCTCCAAAGGCGTCCAGCACACAGTCAGCGCTGCCAGGTGCCCAGCTGTGGGGT----TCCATTACGCTATATGGCCAGTGTCAGTGAGTGTGGGTGATGAGATTGTGCAACACTGTGGTTGTGACCAGGTGAAGTCACAGTGGAAAACAAA---------------------------------------AAGGCCTGGTACGTGTCAGTGGCACCttcagaggaaactgaggcatagccGTCATATATATATTGAGCAAAGAAACATATATGTTTCTGCTCCATGTAGTATTACATGTGGTAAGGAATGCAAACTGTGTAGAGGAGACATTTAACAATCTGATAGGACACACAGGAATGAGGg-tacaattcttttctttttttttttttttttgttttgttttttgtggtatcggggaatcaaactcacaaccttgcacttgccaggcagtgcaAGTTTAGGATGGCAATATCAGACCTACTGTACGGT---CTCCAATCACCAATCCTTGTCC--TTTTCTGTAGCCTCTTCATTTACTTAACTCATTTTGTATCAAATGATATGATACAGACCATAAAGTACAAATAATTGTAGATTAGGATCTCTAG---ATATTTCacttggttttttgcttttttgct--aacttttaa--atactgaaatgTTGACATTTAAAAGTTCAACTAcccttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtattcacacTCATTACctatacaaaaataattcaatgagGACATCCCTAATTAATCGCAGGCCCAGAACTAT-AAATTGGACTTTCAATGTGAATAATAAATTAAGTTCAAGTATTAAAAAGTTGGCAAGGATCTTAGCATGATATTTTACTTTCATTGCAGGTTTGCTGAATTTGAATAAGAGTCATAAAGAGTAGCTAACTCAAAAAACACTATTTCAGCAAAAGAAAAGGGGCTAATCTTTCC--------------TGTTTATTAATC--------ATGAAAATATTCTGATGA------CTTGTTGGAGCTTGTAGAATTGACAACAGAAAGAACTAAGAGA-----CAATAGATACCTGACCCCAAAATATGCTTATCAAGGGCATTTCATGTGTATCAGCAAATGAATGCTAACTGGAGAATTATTCTAAGTGCAGCAGT-----------------------------------CCCCATCACTCTGAGGTCCTGATGAAGAAGTAAGAGGGGTGATTTTTATATACATGGTCAGTGGTACCAC-----------------CCCAGC--------AACCCCTATG-------------CTCAGTTAG-AATGCATGCCTAACAGTGCATCAAATTAAAGGGCAGTAAGGGGGTTGTTGGACTATTGTCATCACTAATTGAGagatttaaattattataaaat-taaaacaatacaaaaaca--------tcTTACTATATGCCTCATCATGCAAACACCACAAATCT----GAGAATTATAAGCA----AATATGATAAAGG---GATGAAACTCTCCTC-----TATTCTTATTGTTTT--------GCTCTGTCTGCATCTACTTGTGTACTGAAGTCctctgcactttttaaaaagccacacagAGGATGCTTAGTCAGAAGTGTGGCTACTCAGATCAGGCCAGGTGACAGACAGAGGGTATGCGTGAAGAGATGC-TTTGTGCTTCACCCTCCAGAGGACAGGTGAA------------------------------------AGGACACA---------------------------------------------------------CACAAGTACGGATGCTCCTCCCTGTT-----------------------TCTGAATGCCT-------------TTTCTCCTCTGGGTG--GGGAACTACAGCAGAAATTCTTTTCCTAGGAGCTAAG--------CATATGTGACCAATTAAAGCTAATATCTCATTTCTAATTCCACCGATTCCTTCAAAAGAGCAAGTCCCAAAGACCATGGCTATCTTTAGTAATCTCACCTCCTCCCCTACTGTGACCATCATCCCTAAGCAAGGATGAAACAGCAGcagggattctggtcaga-gtgtAGCAAAGATTCCTGCCTTTCCAGTGTCC---GAGTTCTGTCTCTTAAGTGCATACTTATGGTCTGATCAACACAAATGCATAAGAAGAtctctctcatc-tctttctttcctgtttccaaATCACAGCTGTGGCACAACCACCATTAATAACAAGATGTCTCCTTTATGGGCTTAAGACCTCTCTGATATCCACATagaaagtgcatttt-tcttttttgccctttAATCTTTCTGTGGTTTGGTAGGAAATCCTCTCCATGACTTTCC

a score=4837
s chr3            99047938 109 + 160039680 TTTTAACATAAAATTTTATTTTCACCACAGGTCTGTTGAGCTTGAATAGAGGTCACTAATAGTAG------CGAAGAGCATTCTTTTCAGAAAAGAAAAGGGGGTCGGTTTTCCT
s HiC_scaffold_1 108910476 115 - 233722169 TCTTAGCATGATATTTTACTTTCATTGCAGGTTTGCTGAATTTGAATAAGAGTCATAAAGAGTAGCTAACTCAAAAAACACTATTTCAGCAAAAGAAAAGGGGCTAATCTTTCCT

a score=28499
s chr3            99048863 628 + 160039680 ATCATCCTCCTGGCTTGGAGAACAA-----GTTCAATGCAGCCTTGTGGTTTACATTCATACAACAAAAACC-------CCAATTCCAACATTGGGGATAAACTGATGATAAATGGAAACTAACTTTATCATCCCAAAATACCCCCTCAAGCTCTGAGGAAATGCTGATAAG---CCTACATCTGCTGAGTGAATCAAAGCAAGGCTGGAGAGCCTGCCCAACATTGTTTGAGCATGGAGGGCAGCCAGGAAAGTACTAGAATTTCACAAGAACTGATCTCAGGAGAACTGACATAAAGAAAACATGGCAACCTTT------GAAGGACGGAAATAAAAGGGAGGGTGGAAGTGTTTTCTGTTCATTATCATCCTCGATGTGAAGAACTCTTGTAGGAAGATAACAGGTCCA-CAATCCAAATGTTCGCCTTCTGCCCCAGTGCCTAACACTGGCTCCTG-----------------TCTCTTACCTCTCTATAGAAGCTCTGTGGCTTCATGACTGAGATGTCTA---CCTTTAAAAGGGAGGGAGGATATTTAACAGTG-TTTGTGA------CTAAATATAAG-ATGCTATATAGGTAAACTACATGTTAATTTTAAAC-CATAAATCACAGCAGAAAAGCTAACTTGGGCACGGGAGCAACACAGTTTCAGGAGG
s HiC_scaffold_1 108912368 669 - 233722169 atCCTCATTCTGGCTTGGAAAACAAACTAAGTCAAATGCATTCTCATGGTTTACATTCATACAACAAAAATCAAAGCTTCCAAAGCCAGCACTGGGGATAAAATTATGATAAATGGAAACCAACTTTATCATCCAAAAATACCCCCTCAAGTTCTGAAGAAATATTGATAATAACTCTCCATCTGCTGAATAAATCAGAACAAGACTGGAGATTCTACCCAACATTGTTTAAGCATGGAGGACAGCCAATAAAGTACTAGAGTTTCATGAAAACTGATCTCAGGAGAACTGACATAAATAAAGCATGTCAGAGTTTTAAagaggagaataaaaataaaagggatagcagaagtgttttctgtttattattaCCCTCGCTGCAAAGAACTCTTATAGCAGGAGCACAGGTCTAGAAATCCAGATGCTTGCCTTCCAGTCCAATATCTGACACTGATTCCCACCTAAGCTTGGAAAAGTCCTTTTACATCTCAACAAAGGCTACTTGGTTTGATTATTATGaagcttaatttttttaaaaaag----------tgtaacAGTGCTTTGTGGGAATACCTAAATTTTAGAATGTTATGTGAGCAAACTGcgtgtttatttaaaaagaataatgtatAGTGAAATACCTGATCCAAAGGCTGGGGGGAAACAGCTCTGAAAGG

a score=78047
s chr3            99050627 3230 + 160039680 ATCTTTTAAGCATCTACATTCATCCTGAACTAAACAAGGAAATGCACAATAAGGATAGGTCTCTACAGAAGAGAAAGTGGAAAAGCTCATTTTAGGTTTTATTGGCACGTTTCCTATAATGTCATTATTAAGGGTCACTAGGCTTCTCTCCCAAAGCAACCTCCAGAAGGACCAGGTATTTTGGCTAAAAGTCAGACTTGTATAAGCAAGACCACCATTTC-CTTGAACTCTGTGTTCTTCTCCGTCAACAAG-----AGAAAGAGCCCAAGCTTCTCATTGTGATACCTACA-ACAAGTTGGCCATGGA-GACTGAGGG---------CCAGTTAGTGTTTATGCCTAGGGCTCAGATTCAGGGACCTCCCCTGCTTTACAGAACTTTTGG--TGTGCATGAGCAATCTTAGTGCCCTCACTGG---TGTTTCTCATGTTCTCCATCCCCTAAACAATGTAATGAATGTAGTCTACATCTTCAGTTCCTAATCAACCATATCAATGGGCCAAAATGTCTTCTGAAGCTGAAGTAGGAACATCTGTAATGATTACAGCATGTAGCTGGAAACTCAAACTGGGGTTAAGTCCAATAATTTATAGGTATCTCTTCATGTTTACATAAATGTGGTCAACTGCCAGGATTGCTAGCATGTACCATATGGAAAATAAAAA-TCATTCTTTTCTAGGGGGAGGGGTATTCTCTTAGATATTCTATCTGGGA-AAGAACATAAAAATCTATCCTATAGCGAGCAGCGTATGCAACCTGAGCTGCAAA-----ACCACTAGAAGTTTAGTATCGCACACACAAATCATCTTTTTTAAAAAGTCATTCGCTGACTTTCTTCCTCCCTTTATC-TCCTCTCCCAGTTTCTGAGTTCCTGATTCTAATGTCATTTCTGAAGCTGCTCTGAAGCTGGTGTGCTTCGAAGACACACCACTATTACTTTACAAGACTGGGATTGTGGCAGAGCCGGGAAAGTCAAGAACTGTGTCTGATT-TCTAACACACATAGAGAGCAAAAAGTGTCCCA--GTATAGTGAAAGGGGGGGGGGCAATGA---GG---GATCATCATGACATAGCCAGTCACTACAGCTTTTAGGAGGCTGAA----AAGTCAAACTGTGTAAATAAATTGAGTATTTCCAAAAATCA------CAGCATTTAAGGAGAGTTTAAGGATTCTTGTATTTTACAGATGAAGAACTACTCTCCAAAGAACTAGTTTG---TTTGAAACATGTT-TGTA--TGTGGCCATGAGTCTCTATTGAAAATGAATGGGGATGGG----GCAAAGGAAGGAAGGTACTGGTTTCAGCTGGAGACAGAGA--GGCTTATACACAGAC-AATTGAGAGATGAGCAAAAATTGAGGCTTAAGGGAGAGAAGTCAGTCTTATAATAATGCAGAAGACAAATTG--TGATGTAAAACTATGGGGAATG---CCATAGACAATAT--AGCAATGGCACATTCTTCCCTTTCTTGATAGCCTCTGCCTAAGGAACAGA-----------AGAAGCAGGGCATCTCAAAAGAATCCAGATTTCTGGGCAAGCAGATGCATCGCATCGGAAAGCCTGCTACCCACTGTAATAGAGAGACCCTTGTCTGACTTGGACTGTATGGTTTAATAC------AATCAATGAGACCCAAAATGCCATCTTAT-----TCTGTTTTTGT-TTGTATT----TCCCCCTTCAGCTATACCTAAACCAGTCTAGAGAAATGAAACCCTCCAGCGGTTCTAGTCCCGGAAGGAAGCCGAACTGCCTTGAAGCATCTGGCCTTGTGCCCACATGTTGTCACAGCTCATAGCTCATCTTTCTCTGTGCCCTTGGCAGCTGATCTGAATAGAGAGTGCACATGAACTTCAAAGGAAGCAGGCAGGATGGAGTTGGGGCCTTGCTGCTTTAATCAAGATGGATTCGAGACCTCTGGTTATCAAGTAGGAAACTGAAACCAGCAATAGAGAA-----AGATGCTGACTAAAAGGAAACTAGTCATTGAAAGGGCACCAGGAACTCAATATACGACTAAATTTTAAATAGTACT-------CCCCTGGTACACGCTGCTGGATTTACTTTTACTTACTGTCTACATAAACAAAATTAGCATGTGCATTAG---AGCCTCCGATATTGCCTAAG-----AAATTCACCATAATGTGCAGTGGCAC-GAAACGTGGTTTCCATCTTCATGTCCT-CCACTGATACTCCTCCCTT----GACCTTGAGCATCTCTGTCCAAGTTTCTTTGGTCAGTGGTGGGAGTAGTGCTCCCTTTTGACTCAGTACCACTATGAGACATCCTTGAATGCTGGGCTTGCCTCTT---TTCTGGGGCTTTGCCTTGAACATGAACCACTAGTGTGAAATGTATCAAACAATGA--TGGAGTCAGAGTCATTGTTC-CCAAGTTGGTCTTCTGAAGGGAAGCA--CACTCTGG--CAGAGTAAGTACTCCAGAGTGTTTATTGCATCAGTGGG--GGAGGAAGAAAACTGCTGTTCCTATGTCCTTGCCCCTGTACCTAGAAGAGTGCTAAGTATAGAAATCATATT---TGAGTTTCATAACTTATTTTGCCCTGGG---CATGATTGTGTCCCAAAGCATCAAGACTCGAG-GTTTAT-TTGCCCTTTGTAGAGAGGAGCCATGCAGAACAGAAGCTTTATAGGACCAGGGAAGGAAGAATCTCAGAGGAAGAAAAAAGGTACACTGGGGTGGGGGTGGGGTGCCTGGGGCCAGGCCT-GCTACAGATGCTTCAT-AACCTATGCATGAAC---TGCTCTGAGTTCTTTCCTTCATCCAAGACAGAAACAC-----------------CCACTTCCCTCTCAGACTTTCACAGACATCAAA---AGATTGTTCAGAGGCAGAATCCAAAG--ACAGCCTGGGACTCACAGACTGGATGTCTTGCTCTCCATGGGGGAGCTTTATTGAAATTATGCAAATAAGTATTCTTATTCTTTATCCTCCCTTCTCCAACCTCATCCCCACCCTAGGTCAG------------CTGTGCAGTTCTCCTGTGCAAAAAGCAGATC-AAGGGACAAGGC----AAATCACCCAGTACTTTCCCCCTGACCCTCTAAAGAGAAGAGAAGAGGCCACACAGGAACCCTGAG---AGAGTGGACGGCC-----AGAACAGCTCTCTCCAGGAACATGGGCAGTATTTTTTAAAAttcttcccaaaagatatataagtgttcaataaacacaagaa-acgtgttcgatcttgtcagttattagggaaatgcaaatcaaagctatataatgaaaCTCATTGATTTGTAGGCTTGTTAAAAAATATTAATAtaaaaacagatactcatataaaactt
s HiC_scaffold_1 108913117 3256 - 233722169 ACCTTCAATGGATCTGAACTCAGCCTGATCTAAGCAATGAGATTTGCAGGAAGGATAAGT---------AGGGGGAATTGAGAAGTCCAGGTTAGCCTTTACTGCCAAAATTCCT-TGATGCTATTATTAAGTCCTATCAAA-GTCCCTCCAAACCCAGCATCCA-CATTCCCAGATCTTTCGGATAGGA-TCTCAATTTTAAAAGTAAGGCTATTAATTCTCCTGGCCTCT-CACTCTCCTCATTCTAAGGATTCTTAGGGATAGTTCATGTCTCCCTAAATCATCTCAAAGTGTAGGGTGGTCTTGGGTGACTGATGGGGTGAGTCCCCATTTAATATTTGGGGTGAGTGCTTAGGTTTAAGGAAATCCCCAGTTTT-CAAAATTCTTGGCTTATATATAGGAAG----AGTGCCTCTAAAGAATATCTGTTCTGTTTTCTCCCCTCACCAAGCAATGTAATAAATGTAGTGTACAATGTAAGTAACTAATCAGCCGTATAAATAT-CCAAAATATCTTCTGAGGCTAAAGTAAGAACAGCTGTAATGATTACTACATT--GCTGGAAACTCAAACTTGGAT-AAGACCAATAATTTATAGGTATCACTGCATGTTTACATAAATGTGGTCAAAAGCCAGGATTGCTAGCTTGTAccatatggaaaacaaaaaatcattcttttttagGGGG----TTGCTCCTTTAGATATTCTATCTGggagaaaaacatacaaatataagGTACAGAAACTAGGAGATGCAATCTGAGCTATACATAATAATCATTGAGAGTTCAATACc----acaaaaaatattctttttaagaa-ttgttttccagctttct--ctttttttatccttCTTTCCCATATACTGAGCTTCTGATTCTAATGAAGTTTCTGAAACTGCTC-------------CCATGGATTTATACCACTATTATTCTTGAGCTCTAGAATTGGGAGAAGGT---AAGTGTTAAAGGTTGTATATGACTCTTTAGTATTTATACAGAGTAAAGAGATcaccaaagagaaataaaaggggattGAGCTGTCACTTGGCTTGTCAATCATGACATAGAAAATTTCCACACATTTTAGAAAGTTGGATATAAAGTCAAACTGTTTAAACAAATTGAGTATTTCAAAGAATGAGaattttaacattaaaagaaaagctAAG---------------------AAGAACAATTCTCCAGAAAAGTAaagtgccttttaaaaaatattatgaaattagaGTCACAGCTTCCACTTAAAAATGTGTATAGAGAggaaaagtaaaggaaagaagACACCA-----AGATAAGAGAAGAATCTGGCTTTAGaacagaggaagacagagacaggaaaacaagaaacttcaggaaagagaaggagGTGTTGCAACAGTGCTGAAGACAGAGTAGTCGAtgcacaaatataaaatatattactataaGGTGTATTTAGCCCTCTC-CATTCTTCTCTTTCTTGATATCCTTAGCATAAGGAACAAACCCTCCCACTTAaaatttagac-ttttaaaataatc-agatttCTGGGCAATC-----CTGAGCATTGAAAAGACTGCCATTCACTTTAAAATAGAGCTTCTCATCTAATTTAGAAAGTGAAGTTTAATACCCAGTGGCTGGAAGAGACCTGAGAGATCAtcctctcattttctgtttttgcattgtcttgggtttttcttttaaCCACACCTAAACCATTCCAGAGACATGAAACTCT--AATGATTTGATTCTCAGAAGGGAGCTGAA-TGCCTTGAAGCATCTGGCCTGGTGCCCTCAGGTTGTCACAGCTCATAGCTCATCTTTCTCTGTGCCCT-GGCTGCTGAACTGAATGCAGAGTATATGTGAACTTCAAAGGAAAATGGCAGGGTGGAGC-GGGGCCTCGCTGCTTTAATCAAGATGGATTCAAAAGCTTTGCTTATCAAGTAGGAAACTGAAACCAGCAATGAAGAATTAATTGACATAGACTGAAAAGGGA--AGTGAATCAAAAGGTGCAGGAAGCTTA--ATAAGATTATATTT---ATAGAGGTGGGTTAGCACCTAGCAGTTGATGGTGGG-TTAAATTTATTTGTTGTCTCTGTAAATAAAATTACCATGTGAAATAAGATAGCCTTGTATAAGGTATGAGATGACAAGTTCAGAAAAATATGCAATAGCTCAAAAACATTGATTCCACCTGCATGTCATGGTAGTGATGTTCCTCCCTTCTTAAGCTTTGAG--TCCTTGTCCATGCTTCTTTAGCCAGTAGTAGAAGCAGCACTAGGGATAG-CTCTGCACCTCAATGGAACACCACTCAACAATCcgttttcctcttctcttctgaaGCTTTCCATC--ACATGGA-----AATG---GATGAATCAATCAATGATTTGGATTCTGAATTATTGTTCTTTAAGTTGGTTTTCTTCAGGAAAAGAGTGAATTTGATTCATTCTAGGTACTCtgaaatgtttgttgaataaatgagaaggaaaaaaaaaaacctttttcttGTAGCCTTGCCTTAGCACCTAGAATAGTGCTAAAGACAAAGATAATACTGAGTCACTTTCGTAACATGTATTGCCCTGGGGGACAGGATACTGTCCCTAA-CTTCATGACTAAGGTATTTATCTTGTTCTTTGCTGAGAGGCACTG--------AGAAACCTTGCCACATCA-------AAATGTCTT-GAGGAAGAAGGA------ACAGAATCAGGGAAAAGGTTCTTGGACTCAATTCTAGCCATGAACGTGTCACAAATCTTTGTGCAGATTTATTCCCttggttctctcctttgtctaAGACAAAGAAACCTGACCTCTGGGGCCCTCTACTTCATTCTCATCCTCTTATAAATCTCAAAGAGGAATTATTCAAAAACAGGAGCCAAAGAAAAAGATAGGTACTAACAGATTAGACATGTTTCATTCCA--ATTGCATTCTTTTCAAATTGCACAAGCAAGAA-----------CAGCACCCCTTTCCTTCTCCCATTTTCACCCTGAATCTGTGACTGGTGCTTCAGTGCAGTCCCTTCATGTAATGATGAAATCTAAGGATCAAGGCAGCAAAATATCCTCAGACTTT-TCCCTGAT-------AAGGGAGAGGAGAG----CAAAAAAACTCAAAACCTAGAGAGGACTGCTAACAAAAAGCAACTCTCTCCAGGAATACGTG----GTccttaaaaagtttcttcaaagCATATATAAGTGGTCAGTAAGCACCTGACTAAATGCTTAACATCATTTGTCCTTAGAAAAATTCAAGTCAAAACCACAATATGATATCACTTTATGTACA-------TTGGaatggttaaaataaaaaataacagtgatAACAAGTTT

a score=20700
s chr3            99067017 738 + 160039680 aaaggtgtgcactaccatgcccagcCTCGCACAATTACTTTTTATATCAGAAACAGAACTCCTTTCTTCTCAACAAAGATG--TCTTTGTGCTACTCAAAACTTCTCTCTTTAAAAGGCACAACTCAATTGGCCACTGTAGCCCTTGTAA--GAGTCCAGATGAGGTAGGAAAGCTGATGGGGAGGACAATGTGATCAAAACTGGCCAGTG-------CGCATGCTGG----CTGGCTGAAGTAGAAATGAATAC--CTCAAGACCATTTGATAGGAAAGTCCTGGACAGCATCATGGCTCTCTGCAGAGCATGTGGGGCAGTGTCTGGGGAAATCTAGTCAGA----CACAAGCATC-CCAGGAACAGCTGGAGAAGTCAGGACTCACGCAGGGAAATGTCAGCCTGTCAGAACCATAGAATCAAAAGACTAAGGCCTATGAAACAGAAATCTTTGTCTGCCTGTCCGCATGTCTGTCAGCATGACAGTTTGGGTCAATAAATATTCATCATGATGCACCAGTCTGACTGACCTATCCTACACCCTCCACTAGAGGAGAAAATAAACAGAGTTTATGGGGATAGAGG---------CTGTCTGAGCTGCCATTGTATGCTATGA-GTGAGCTATGAACTTGAACACAGCTTT-----ACCTCTTTGACTTTTGCATCTAATACATGGTATGGAACCAGCTCCTTATGTGTTAAACAGTAACAT--------ACTTGTAACAATACACCAAGTATGAGAAAGTGACATTTTAGGAAAGGATAG
s HiC_scaffold_1 108925019 724 - 233722169 AAAAAAGTTCACATTTATAACCACCCT------GTTACTATTCATAGCA-AAGCAGA--TATGTTTCTTACCACAAAGATGATTCCTGGTGTTGCCCAGGACTTCTGTCTTTAATATGCATAAAATAC-------CTTCAGTCCCTGTGATAGAGCCCAGGTG------------------TGAAGAGATTGGTATCAGGACTGCCAGGCGGAGAGCCTACACATTGGGGTTCTAACTG---------TAAACACGTCTCAGGACCTCCATATGGTAAAGGCCTGGGC--CAACACACTCCTCAAGAAAGCAAGTGGGCTAGTGTCTGCTGTGACATAGTCAGAAAGGTACTGGCATCTCCAGACGCAGCTGGAGAAATCAGGACCCATGCAGGGAAATGTCAGCCTGTCAGAAACATCAGAGCAGAGAAATGAGGACTCTGTAACAGAAATCTTTGTCCGCCTGTCCACGTGTCTGTCGGCATGACATTTTGGGTCAATAAATATTCATGGTGATCCACCATTCCAGCTGACCTGTGCTACCTCCTCTgctggagaagaaaataaac--agtttcTGGGTGCAAAAGACGGGGTCCCCTTCAGAGCTGCCATTGTGCTCTGCCATGTGAGCCAAGCACACAAATGTTGCCTCTTGAATCCTGTGGGACTTGTGCATAAAATAGCTGGAATGGATTTGACTCCTC-TGTGTTTAAAGGTAACAGCGCCATCAACTTAAAACCGTA-----------GGAGAATGACATTCAAGGGGAGGCTAG

a score=8295
s chr3            99080607 282 + 160039680 CACATCAGACAAGTCCAATGCCTAAGTGAAAATCGTATTTAAATATAACAAGAAATAAATGTTAAGTATATGGATGAAC--ACTTAAAATATTGTCAACCAGTTTTGAGTCTATTCTAAACAACACTGGGATAAGTAACT----------GGAAAGTCTAAAATAGCTTTTGAGAGAAATTTTATGAAGACATTCCCCAGGGTATAGCGAATACATTTCCACCCTGCAATGAAAT-CAAAATTTAATCAACCAAGTTTGCTTCAAGGAAATGATCCCTTCTGCAGGAATTAGGAA
s HiC_scaffold_1 108929020 288 - 233722169 cacatca--CAGACCTAATATCTCAATGaaaattttgattaaatataataa---ataaacttta--tatGATGACAATTCAATTTAAAACATTACCCATCACTTGAAGGAATGTTCTGAACTACATCATCATCAATGATTTGTGTAATTTGAGAAGCCTAAAATAGCTTTTGGGAGAAACCTCATGAAAACATTTCAGGGAAAGCTGACACTACTTTTCTGCCCTCTTCTGAAATGTAAAGTTTAATTGATCATGTATGAACTAAGAAAATGGTCCTTTCTGTAGAAAGTAGGAA

a score=23953
s chr3            99090657 1313 + 160039680 TTTGTCGTATGTTT--TGTTTTCAGAAGAC---ACCATGAAAGTGCAAATGCCCACTGACTACCATTCATCATTACTCCTGTGATGCTCGGTTA--AGTCTGCATTTCCTACAG--AGATCTACCGGGGATCTGAT--------------------ATACCATTCGTTG-------ATCATGAGCCCTTGGTCT--ATCTCATCTCCATCCTCCTCATTCCAGGTTCTGTCAT-------------------TGTCTCTCATTTTACAACAAATACTAAAGCTGTTTAACTTGTATTTTCCTGCTCTTTTCTCTGCCACTTCCAAATTTATGTCAGTTCTCTACATTTAAAGTAATCTTGCCCCCAAAATAGTATTT----------AAGAATTTGAAAATGATATTAAAATTTTTTCA-AAAATAACA-----GGCTATGCAGGAAATCTCTAAATAAAATAGAAAGAAATTAAAAAA--TACTATCTCTCATAAGATAGTGCAGTAtattttgaaacttcaataaat-gataaggtttgatattcaataaaaatta-aaaatacatgcagcataatagttcagaaacagattcaaatgcctatcaagttttggcttgtcatgaaggtgacatatcaaactgggtaaag-----attgaagaattcaaagaatggtgttggggaactttctggctatgaagggggaaaata---aaactatatttctctcatcaaaaa-taaattccagatgtatta------ttcaaatgtagagaatataagacttaaagAAATGCATGAgaagtaaaaaggattacatttacca----tgctgtctatcatagctc-------------taaaacgtagacaaacattgatttttgaacatcagatgacaaagaaccacaatccctgggagaccagacacaaatgacaggagcctaagattgcccggccttgcaaatgtccaggctataccttggagaaagggaagccaactag---ctcagtgtctcactatgcagagaagatgaggcctgaaggtctaagATTGG---------TAAAGACCACAGACTGATGTTCTAGAGAAGAAGATACAA---AAGGCAAG-TGCTGAGAATTCCAGA--ATCTCCTGACAATTGTCAACCTCAATA-TCCTTAACAGACTTGTAGGGGTCAACTAGTAGAGGTGCCCAAAGTTGAGAGGACAGCCATCT-AAAAGATTAGAAGGCATGC---TCA---GAGTGGACTCGAGA-TGGTCTTATTCTC-----CCATCTAGAAACACCTCAGGATTGAAAGGACATCAGGTT------------------TGCCTCTTTAATGAGAGATATTTTTTCCATTAAATAATGCTGTTATCTTGAATAACAAGATGCAAATGGACAAAAATCAAATTCAAGAATTGGTTTGGGATGTAACTCAGTAATAAACCAAATG
s HiC_scaffold_1 108939274 1402 - 233722169 TTTGTGGCATTCTTCATGTTTTCAGAGGAAGGAAACATGGAAGCTTCA-TACCCACTGATAA--AGTCGTTTTTAGTCCCATGATGCTCAGTCATTGCTTTACACGTTTTGGAGCTAACTTTCTCAGGGATCTAATGACTCCATTCTTCATAGTACACATGATTCACTGGAACAGCACCATTTACCATTATTCTGAATCTTACCTTCATCTTGTTTATTCCAGTGTATGGAATAGTAGGAGCTTTGGAGCTTTGCCTCATACTCTATCACAAATA---AAGTCAATAAATTTGTAGTCTCCCAAATCTTTCTATG----TTCAAAATTACCCTGAGACCTACACATTTAGTATAATCACAAT----AAATAGCATTTGCAATATTTGAGGTGCTTTAACGTGATATGAAAATTCAGGCAGAAAATCACACGTAAGACTacttaagaaaattttgaa---aatattttaaaactgagaaaacTACTAT----------GTAatgcaatatattttgaaatttcagtaTGTCTAAAAGGTTTACTATttgataaaaatcagaaaatgcgTGTGATAGAATA-------AACAG-TGCAAATATCAAGGAAACTTTAGTTTATGATAAAAGTGACATTTCAAACAAggtgaaggggaaaaggaagaattcAAAGCATGGTGATGGGCAACTGGCTGGCCgctaaa----aaaatattgaaattacatttctttcatcaaaaaataaattccagatgtattaaagatataaaaatgtagaaaatacaaGATTTAGAGATA-GAATGGGAAA-AACATGGACCAGATTTATCTATCTTCCTGACTGAAATATCTAAAATAGGCAAGGACAAAATataggaaacaatttttttttaaatattggaaaacaaaaaGTAGTGATCCCTGAGGGACTGGAAATGAATGACATTAGCCCAAGGAT---------------TGTTCCTGCTC-------AAGGGAGGGAAAGCAAGAGGAGACCCGAGATCTCACTA---AATGGAGCTCAGAGCCAGAAGCCCAGGAAAGGGAAGGCAGCTAGAGTCCACAGAGGGAAAACC-AGAGAGGAAAGAGCCATGTAGAGTGAGCTGCAGAGATCTTTAGAGAACCACCTTGCAGAATTCAAC-TCAGTACTGCTAAGCAAACATGTCTGGTTCAACTAGCTGAAGCCCTAGAAGCCAGGGGAACAACTGTTGGAAAAGACTTGAGAGAAAACGCCTCACATTAATGGGCTGGAAACTTTTCCTGCTCCTTGTAACCAGAGGGAAATACCTCAAAATTCAGAGGACATCAAGTAAAGCACCCAGAAGAGATACGGCTCTTTAA--AGGCAAATTATTCCTATTAAATGCTGCTATTGCCTTGGCTAACAAGATCCAAATGGATCAAATCAAGACTAAAGAGTTAACTGGGAATATACTTCAGCGATGGAGCACATG

a score=10037
s chr3            99102028 412 + 160039680 CACACAACCAACAGATGAAGTGGGCATGGTTCCCAGGGAGGAGCTCACCTTCCTGTGCAGCTGCAGGCCTTCCCCAAATTGATTTATAAATGTAGCATGCCCTGATTTTTCAAAATGGCAAAGTAAGTTCTTGAACCAGACAATCTGAT---------------AGGAAAC-----TAACAACTAGGAAAACAAGAAAATCCAAAAAAAATAAAATAAGATAGAAAAGAGACTCATGAAAAGAGACTTTCTGCTATAATAACATGTATA---AAACACATTGCAAATCTTACATGGC-----------CACAAATCTAATcttgattttatattataaaggtgatgtttcaaacccatggataagtggtaggttacttaataactggtgctgaaacaattgggttgccgtttggaagaagcatcaagtttgTTTTCTCTCTTTCCT
s HiC_scaffold_1 108945776 431 - 233722169 CACATAAACAAGTGAAGAAGCAGACCATGCTCTCGGGGAGGAGAAATCATTTTTACAAAGATGCCTACCTTCCTTAGATTAATCTATAAGTTTAACTTGCCCCTGTTCTTATTAATATCAAAATGATACTTTGAACTAGATTATCTGATTCTAAATTTCAGGTgaagaaacaataacaacaataagtAAAACAGGAAATTCTGAAGGAGAGAGAAGAGTGTTAAAAAGAAACC------------ATTTCTAGTGTACAAATTTGTAAAcctacaaataatgaaaatatgataCGTCAtgacataaaacacaaaaataataaaggtttggtattataaa-ataacattttaaatccgTAAGTAAATGACAGATCacttaataaatgatgttgagaCAATTGGTTAGCTATCTAG--GAAGACAGAAGTTTGGTTTACTTGTTTCTT

a score=14277
s chr3            99105764 1117 + 160039680 ATCTGTACATAAGCATCTTTCCCCAGCACCCACCACCTTTAACTGATGCTCCTCTCCATTCTAATAGACACCAGCTGACTTTTTCTCAATGCCTTGGGCACAGCCAATGTGGATCAGACTTTGGGAGGTAGGAGTGCTGTTAA-----------GAGAACAAAATCATACCCAAACCCTATAATGAGGCTGAGAAATGGGCTTGCGGTTCCCAGTTGCCATCGATGAATTTAAGTAA----TTAACAGTACTTCTATTATGGAGAAACCAGTAAGATCACTGGGTTGAAAAAGCTAGTTTAGAAACAGT----------------------TTTGATTGACTAGGCTCTTCAGAGCCTCTC-CTGGAGCA-----AGATCTATCTTCACTACCAGAATGCCAT-------GATTATTATG--------TTTATAATCTTCTTGTTGGGTCCCTCAACTTAATTTTCCTTCTGTATAGCTTGGATTTCCTATACACTAGCTCTCAATTTGTGTTTATATGGGCTTCTGTGTCCCTGTGCT-----------CAAGAATGTACATGCTGACACATCAGGACATA-----------------------------------------------------------------------------------------------------------------------------------------GGAAAATCTGCGTGCATGCATGTGAAATCATTCAGGAGTCTGTATGTGTATTTTTA----TTCAGCCATGTGATTTTATGTATCTAAAATGCCTATATGAGGGAGATGAGCCAAAATACATTTGTGAAAGCT-TTCTGGTAGAATTTACAAAACAAATACATAAGA-GTGAGTTGTAAGATCATGTGTGGTGTATGTTTATTTTA-ATGTTTCCTCACTTTTCAG--ATGAAGGAGCTGAACTGAGACTGGAATATGATCCTGATGCTGTCCTCAATAGCCAAATCAAGTGA-GCTCTACCTCTGAGA-------------------GAATGATCAT----------------GCAACCAGGCAGTTTTT--------------CATCTGGCAGTTTCTACTATGGACTGTGGGCAAGAAAAGAATGGCTCCTCTCTGGGCC-ACAGATCTCTTAGGAAGACTCTCTGAAGAGTCTAAGTACACCAAAGGGCTTGAACTTTGGTAGAGAGAAGCAGGACTCTACCCTGAAAAACAAGGCCAGTACCCTCGTCA-------------ACCCATACTACTATATCATCA-TAAACTTGGCTAGAGATGACCGGAAGCTCAAAAGGACAATGACACAAACACACAAAATAGGC----AAAAGCAATTCC----CTACAGTagtggtttt
s HiC_scaffold_1 108947471 1378 - 233722169 ATCTCCATTTCAGCATGGTTTCCAACTGCCTACC---TTCACCTGATGCGATCCTGAAACCAAGTAGACActtg--gtttttttctctcctcttcacaCACACTAACTGTGTG-----CTT------ATACAAATAATATTAACTACTCACTCATATATCAAAACCTTGCTAGATGTCTATGATAAGGCTGAGAAACAGAATTACAGTTTCTTGCTAACATCCAGGAATTCAAGACAACTCGTAACAGTCCTACTATCATGAAGTAGCCAGTGACACAGGCAGCCTGGAAAGGCTGGCTTAGCAGTAGCACTGGGCTGTTCTTTAAGTCAGTTTCTCTAGTCAGCTTCTGTGGAATCTATTACTGGAATATACAGAGA---ATTTTTACTATGGAAATACCATTAAAATTGAATACCATGCTTTACTTTTTATATCCTACCTGTCTAGTCTCACCAGTTGTTACATCTAAGGCGTTTCTTGTACTTCTTATTCAGTAATCTTC----CGTGTTCCTTTGAGCTTGTGAATGAATGTGCTGTGGTATATGCTAAAGGTATGCATCTTGATGTGGGAGTATATAAAAAATCTTATCTCAAGTGTGGAGTTTCataattgtaatcccagcacttgggaggtggaggcaggaagattgtcatgaGTTTAACACTGGACTGAGTTATAGTGCtcactcaaaataaaagtaaaaatacaagtgAAGAAAAACCTCTGTGCATATATGTGAAATTATTCATGAGTCTGTGTGTGCATTTCTGAGTTTATATTCATATGTTGTTGTTCATGAAAGAAGTATATATGGGTAagatgagccaaaaataaaatttaagagccACTCTGATAGGGATTCCAAACCTAACACATGAGAGGTATATTTTAAAGCCATTTGTGGTTtatgtttcttttacatttttctcttgctttcagATATGAAGGAACTGAGC-ATGGTTGAAATTTAACCTTGATGTTCTCCTTACTGGCAGCATTAGGGGAGGCCATGCCTCTGTGAGCAAAGGTAGAGTGTGAAGGAATAATCATAACTTTCAATTATCTGGAAAAGAGGAAGCTTTCGTTCAGGACACAAAAAACTTGCAGTTATGCCTTAGAGTTAGAGCCTTGAAAGGAATTCTTTCCCACTGGGCCTTCATTTTTCTTTCGATGAATCTTGGAGGAGTCGAGACATGCTAGTGGACTTTGCCACT--TGGAGAGAACACGGACTCTGCCATATAGGA-AAAGCCACCACCATAGCCAGTGAAGGTGGTAGGCTCATGATTGTGTTACATCATTAGATTTGCCTATAAAGTGCAGAAAGCCCAAGATAACAGTCACTTGAACACATAAGGGAGACCAGAAACAACTATTCCAAGGATACTGTAGTGATTTT

a score=95866
s chr3            99110356 5394 + 160039680 [encoded data, 5725 characters]
s HiC_scaffold_1 108951248 4871 - 233722169 [encoded data, 5725 characters]

a score=5753
s chr3           99124185 117 + 160039680 AATATTAGGCTAGTAATCATTCAGAGATTCACAGGTCAGAACACTAAGCCCAGACATAACCTCTACCCTCTCTGTTGACTACTAACGTACATGACGCACA-----------TGCAACACCTCTAGGGG
s HiC_scaffold_1 39210490 128 - 233722169 AGTGTCAGGCTACTAATCATTCAGGTATTCATGGGTCCGAACACTGAGCGTAGACATAGCCTGGATTCTCTCTGCCGCCTAATGACACAGATGTGACACAGCAGCCACGCCTGCAACGCCTCTAGGGG

a score=30658
s chr3            99128876 1929 + 160039680 TGGAGGTAAATCAACATGTTTTGCTTAAGTTATAGTAGTTCTG--------------AAGTAGGCTTTGCTTTGCGTAATTCTCTTCTGCTCAAC--TGGAAGGACTCCCAGGCAACC--TACCAA----------GAAATCTGAACGTTGCCGAAA----------GCTTAGAATAGAGGTGCACAGAATATCTGACTTATTAACTATTGACTTAGCATTATTAATGGCTTCCTGTCTAGATA--------CTAAGGACCATAAAATGGTTTCCCCCCTACCAAAAATCACATCACTGTTGAAAAACACGGGCATATAATTACTTTGTTACCAGGGAAGATTTGCTCAATATTTATTTGAGCACCAGAAATTTTTAGAACTTGCCAGACTATCTTGAACCCCCAAATGATACAGCCACACAG----GTAGGCCAAGCTAACCCTCGAAAGCTGGCCAGGGTAAACCTCTTCAAGGCCATCAGC----ATCATGAGGAGCT-----------TCAGTGTGA----------TGCTTGGTCACCTCATTCCCCAGCACCAGCATCTTCTTGAAAACTACCAGATGGCATATGTAAA--------AACTCAATACACAGCTTAGAATATGTATTATTATGTTGCGATTCCTCCAGAGGACTGGGAGCTCCTTGG-TTGTTGTAATGTGAAGATCAGCTGCTGCTGCTGCCAGAGA-AGT---CAGCTTCCCTCAAATGCTTACAAGACATAGGCATGGCACCAAATCCAACCTCATGGCATGGTAACTTGATT--GATGTTTGGAAAAAGAGCTGTCTCCCACACTGGCCATTGCTGTCTCAGAGTGTACTGCTATTGAAAGAGTTCTTTAAAATCCTGTGATCCTGATTGAGTAGGGGAAAAAAGCAAGAGCACTTCTGACAGGACCCTGATCACTCCCGCTTCCAGAACACCACCACCTGACTCTGCCTTAGCCCAGAACACCTGCA-GTTCTATGCA------GCAGCTGACTGCCTTCCTAGGACTCCTCTGTCCCTCCTGAACACAGATGCCTGCCTTAGTGTCCAGCTGAACAAAT-TATGACCAGTGTCTGTGCTGCTTATGTGAAAACAAATACATACCTGCCTCCCACCTCAGACCTGCAGAGCCTGTTCCTCTCTCACATGTGCCATGTCCCTTCTTTATACACAAACATGAGCTACAGGGTGATAGCAACAGTGCTTCTATGATACGCTCTGCCCGTA---------GGCCTCTTTGGCAAACCACGCTGAAAATGTCATCTATGGATATTTAGTTGAGCATTGTGTGAATGTCGTTATGTTTTCT----------------TGAT--ACACTCAGTTAGGAATGAGAATGACGTCCTAGTCTTTCCAAATAGCAGTTGGACTTCAGGTACTTTAAAGATTATCCAAATTGCTACCAACATGCTTCTATCCCTTTCAACTCAGTTCAACAACTGTTTACTGAGTGTCTGCCAGGGAGAGGGTTGCTTATGCTATATAACACGGAGTGAGACTGGTCACTTCTCTAGAAG-ATGTTAATGACTCATGGAGAGTACAGTTAGCCAATGGTAGGACAGGCTGTGAGAGAAGCTGTGAGATATGGAGAACAGGGTACTGAGGG-GCATCGGGAGG-----AGCACCAGCTTCGTTCAGGTGTATTTCACATGGCTTTTCATCCTCA--GGCTGCGGAAGAA-AGCATGCTGTTTGGATGACAGAAAGTGCTATGAAAGTATCCTGTTTAGGAAA-GCAAATGAAATCCCTAATACTTCCCCCTG-GGCTTTGTCTGTATTCAGTGGTTT--CTTCCAAGTTCCTCTTCT----TATAAAGTGTTTGTGACTCCTCTTGGGTTGCACAGGATACTGGCTCTAAATAGAATTCTGGGGAAAGCACTGCAAAAGCCTGTGTCCTACCAGGGCGTGGGAGGCAGGGGATAATGGAGCCAAGCAGGGACACCAGGTTCCAGGGAAAGGAACCCACACAGCACAGCTGGCACTGGTTTCCAAAAGAACTGAGGCCATGGGTAGGCAAAGCTAA
s HiC_scaffold_1 108978195 1914 - 233722169 TAGAAGGAAGCGGCCAAGTGATGTGTAAGTTATAGCATGTTtgtaaaagaaaagttaaattgaaTTTTGTATTAC------CTGTTCTGTTAAAACATACAGAAACTTCAAGGCAACTCATACCAATATACTTAAGGAaaagtaaaagaggaagaaattttgaaatagcTTAGAATGGAAATGTGCAGCACATTTGACTCCCCAACAACAATCCTAACATTCCTAAtggtttataatatatttattttctagctggaaaacaaaaagtaagttTTCTCATGACAAAATCCATGATGCAATTGTAAAAT----GAAGatgtttgttttgttactgggTGAG-------CAGTATTA--TTGAG--------------AAAAATCAGTAGACCATCTTGGCCTACTACTT--TACAGCCACATAGCAGAGTTGGCCAAGAT-------GCAAATCAGACAGCATGGCACTGC---AGGCCATAAGTGTTTATTCTGAGAATTTAGAACTAGATCTCAGAGTTACAATATACTCTGTTTGACCATGTCATTCCATTGTACTGACATCTT--TAAAAAGTACTGGAtgctatttgaaaattaaaatgaaatgaatatttaattttg--ttcttaaGAATATTTTGCAATTTCCCTGGACAGCCAGAGGCTCCTTGGACTGCAGCAAAACCAGGA---GGTGCTGTCTCTTCTAGAGACAGTTGGCAGTTGGCATCAACTACTTCTCAGAAGTCAAGATGCCACCAAG---AA----GTGTCTCTGCCActtgatttgaattttttcaaagcAAGT---------AACTGAACA---------------GTGCCACTATTAGGAGATTTCTT-GAACTATTGTATTGCTGACTAATTGAAGGCAAAGCCCAGGCACCTCCCTTTCTGG-CCCTGGCCAGTTCCAGTACTGGCATACTATC--TGTGTCCTGGGTAAGTCCTAAATATCTGAATGCTCTGTGTATATCAAGAAACAGTTCTTTTTTCTAA---TCCTCTGTCATAC----ACACAGATGCTTGCTTCAGTATTAAAGTAATCAAATGTGAGATCTGTCTCTGTCTGAATAGTCAGAAAACACACTAACATCTGCCAACTACTTTAGCGTTTGAGAGCATTCTCCT-TCTTACATGTCCCATAATCCTTC---ATATACAACCACAAGTTACAGGGCAACCACAAGAGAAATCTTACACTGCTCTCAAGCTGTACCCCTTTACAGCCTATCTGTTAAGACAGGAGAAAAATGTCATTGGTGAATATTT----GAGAACTGCAGTGATATCGGGAGGGTTTGTCATAAATAatcaattataattaaaaatcagTTGAAACTGAAAACTATTTTTTAGCCTTTGAAAATGAGGGTTGGACTTGAGAAGTTTCAACATTTGCTCAAACTGGtgcatacataattttattttgctcaatTTAATTCAGCAATTACTTACTAAGCATATG----------------TTATGCAAGGTA----------------GTCAATGGTCCAGAAGCATTTGGAAGGTTCCTGCAGA--ACCATCAGGAGATGAGAGAAAG---TGTGAAAGAAACTGTGAGTG--GGAGCACAGAGATGTGAGGGAGTACCCAGAGGTTACTAAGTCCAACTTGGAAGAAGTGT---------GGCTTTACATCTTCACAGTATGCTAAAGAGGAGCATGCTGTTTAGATTATAAAAAGTGCTGTGAAAGCATCCTGTTTgggaaaagcaaatgaaaacgtgtttattttctcctttggcTTTATCCACgttcattttctttgcttctaatttcttcctttatttcatcatGGGCTTGTGATTCTCTATAAGCAGCACAGGATGCTGGCTCTAAATAGA-TTCCTGGGAAAGGGCTGCAAATGCTTGGGTCATGCCAGGGCGTGGGAGGCAGTGAAGGAAGAGGCCAGCCAGGGACAACAGG----ATGGGGCAAAACACCCACAACACAGCTGTGTCTGATT---AGTAAAACTGAGGCCAGCGATAGGCAAAGCCAA

a score=19925
s chr3            99133647 715 + 160039680 GAAGGATCATTGGGTTACGAACGCAATACCTACACGAATGCAAGCTGACACAGCTAAAGACTAAGAGGAAGTGCAGGAG--TCATTTGGTCCCACGGTGTCCATT-TATTCAGATAACAACATGGGCTTAGAAAGGAAGGTCTTTATGAGATCGGTTTACCAGTGACAGCACAGCACAGGC-AGAAATAAAATCCACTGttcatttatgtgtttgtttacttatgaatttatttacttacttacttacttaGTGCATTCAATCTCTCCAGGAACATTATTTCAGGATTTCCATTGCTTTAAGCCTCCCAAGGGACATTTACCCTTTGTAGATATACCAATGATTGGGATGTATGCTTAAAATAAAGTGCTGGGCCACA--GAACTTCTCAGTAAGCAGGGAGATGATGCAAACTCAAGGACTGGGTCCAGAAATGCATCACATTTTCATACAGCATTTGCTGAAACTGGATTGTGAATAACTTCCACAGAAATTATTTTACCC---ACAGGAATGCTATTTCTTCCCGCAGGGATTTGACCAGCCAAAAAGGACGACAAAATGCAGAAAGAGCCGTGATTTCGATTTAT--GTAGAGGACATTAGCTGGAACCTAAGTAACATTCCTCAAGTAATCAGAATATTTTATAAATACTGATTTAGCAGAAGGAGCAAACCACAAGAAAGTAAGCATATACTGTACAATTTTAAAATGTTTCCAGGGTTT
s HiC_scaffold_1 108983183 672 - 233722169 GGAGAATTGTTggattaaaaatacaatattcacATGATCATAAACATACACAGTTAAGGGCT----GGAAGACCAGGAGAGCTATCTAATTCAGCCACTTTCATTGTATTCAAATAACAAAACAGGTTCAAATATAAAGGCTTTTTCAAGATCATTCTGCTAGATCCGGGAAAGTCAGGACTGGGAATAAAGTCTAGGGTTTTTTT-----TCAGTGTACTCATTGATTCCTCAA--------------------ACACAATCTCCTC--------TTTTGCTCCTCATTCATTGCTTCAACACTCTTAAAAGAAGTTTGCCTTCTTT-GATACATAGATA--TGAACAGAATCCTTAAAAAGAGATGCTGGCCAATAAAGAATTTGACCATAAGTAGAGAGATGATGCAAACACATGTGTTAAGTCCAGAAATAAATCATAGCTTCTCATAGTGTTTACAGAGATTGTGCTTTGAATAATTTCCACAGAAATTGTTTTACCCATGACAGGAATGCAATGCTTGTCCACAGGGATCTAaccaaacagaaaaggaaaggaaacggAGGAAGAGTAG----TTAGatttattattcaaaaatattagttgGAACCTAAGTCATAAACCTCAAGT-ATCAGAATATTTCATGCACTCTGATTTTTTTGAAAGAGCAAACCACAAGAAAGcg---------tagacaattttaaaatgccTCCAAGGTTT

a score=52628
s chr3            99134946 3190 + 160039680 aaaaacaaaTGAAAAGTCCTTTTTAGGCATCCATCTCCTAGTATTGCCCATGAACATGGAGTCAGTAAATAAGTGCTGGATGTA--AATTCTGGCTATAATAATACGTAATTAAAAAAATTTCTAGAAAGCTC-CATTTTAGGAT--ATCAGAAACCAGTTGCCTAGGCCAACATG---TCAAATGTATATCCTCCAGCAATCCAAATCTTCCCACTTATTTTACATGTAAGAGAAAAGGGCATGTGAAGTTTAAATGACTC-CTGGAGCTCCT-----GGCCAGCGTGCTGATTTTCTCAAACACCATACTATTCTGCTTATTAAAGGGAAAAGGTGAAAAAGAAACATAGCTGGTTATAATTGTCAGTGGTTTTGGGGAAGTCTGATGGATTCTAACTCACTGAAATGGATTTGACAGCAACAGAATGAGATTGATACACTATTTTTAGAG-------------------------AGATCAAAATCT----------CTTGGTTTTAACTCCAGAA-------------------AAGTGAAGATATAAACAATTTGCGTG--AGTTTCAGTAGT---CACAGAGTAGACTCTAGATcagtggtcctcaacctgtgggttgt-----gacctctgtgggggtggaatgacccc-------cttcccagaggttgcctaagaCAATTAGAGTAAAATTTTTAGCAGGTA----------TGGGCTA----CTATTCTTGGCTTCCAGAAACATT---------TTCAGGTGAACCTTGCTGAAGTTTGCTGTGT---------------AGAAACTCAATTTAGAAGTTGAAAGCCTAGTTATGAGGTCATTGAGAACCAAGGATGGATTAAAAATAGAACATGTGCAGAAAACGTACAGATCTCGTCTTCAGTGTCATGTCATCTTGGGAAAA-------AAAATACAGCAT-TCAAAATAAAATGCTCTTTTCAAAAGTTTAATTTTGCTAATTTTAAAGTTCCATTTCTTCTACGGAGAATGTGTCCTAAGATGAAAGATAAACAGGGCAGGTTGGAAATGCTAAGACAGTCTCTTGCAATTCCCTCTGAGATTGtttgttttt----------ttgagacagggtttctctgtgtggccttgg---ctgcccttgaactcactctg----------caggctggcctcagacttatagagattcatttgcctctgcctctcaagtgctgga-attaaaggtatgtgccaccaccactcCACTGAGGTCCA------------CATTTAAGGATCTTCATTCTCTACCTTCTTTCGAGCCACTCTCTCAATTT-----AAAACTGCAGCTTCAGAATGATCTGGAGAAAATAGTAAAACCATCAGCCACCTTTAGGCCTACA--TTCCTCCTATGTAATTAG-------------------TTCTC--------------AAGCAGCTGCTACACACTAAAGACCAC-CAGAGTCTGTATTCTGAACATGACTGCCTCCAAATTGCTTACTGGGCATGCTCCATTACTTTCCACCCTCCCCACACTGCCTGTTAGCCCCAGTGAAAACATTGTGGAGTGGAAATGAAGAAGTCTT----TAAGGGTTTTGCTATT----CATATCCCTTGA------TCTTACTGGATTACAGTCTGGAAGAGACAGTGATGTCTCCCTTACCAGTGCAAAATGGCCTTGAAGTACAAAATG--AGTTCTTTGTAAGATAATAAACACGTAAATGTG----------------ATAAG-------GTGGTCATAATGAGATAATT--TCCAATCCCCATCTCCCTCCCTTCCTCTCACCCACCaaaaaaaaaaaaaaaaaaaaaaaaaCAACTAGAGAAAGGGTGTCTTCTAATATGAGGGAACAGCATCACCTTTCTAAAAATCAGATACTCGCTGTTCTGACCATAAAGCCCCATGCAGGAT-GTGGCTTCATGTAAAACCTGTCCTCACTTGCAACTGATCTAACTTCAGTTTTCTTAGCAGGGCACTAGTATGGAAATGAAATTGAGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgcgtgtgCATGCACACCCAAGCCTATAT-ATTCTTGCTCCTGTTTGTGGAATGGTTTGTGACAAG----TACTATCTATGGACCAGTTTCATACTCTACGAAATGAGTCACAGAACTAAGGTGAAGCCAAAGCTGAAAAAGAA--GTCACCA-------------GCTTCGCACTCACTTTCATGGGCATGGTGGTTATCTCATGCAGGAGTAGGACCCCACCAATCCCTTTGACTTTTGTTTATATAATCGGTCCAGGGTAAGAAGTCATGGTCAGAGAGCTGTTGCTGTACTCCCATAATTATCCCT-------TTTCTTTCTGTTATGGAGTCGCCTCCTCCGTATTGAAAGAAAGCACACTCGATATGCACGAAGG-GTTGGGATGAGTGGCTTATGCTTA---AAGTAAGTTTTGAATACAATTGCCATCTAATTTTTACAGTCTGCAGAATTCTTCTCTAAGTGGATAAATGTGTAGGCTGACTCTCCATTACCTTGATCAGCACCTAATGTTAACCTGACACTTAGAATTAAATTAAAGAAACAGAACTGGATACTTTGAGACTTGGGGGCTGATTATACTA---GAGCTAAGAATGGGTTTAAACTCTTCCCTTATCCCATTTAAATCTAAGTAGGTATAAACTCTCCATTACTGGGGAGTAGAGGTGTGTCTGCTGAGGTGGGG--TTCCCTTGATGTTCTCGGACAAGGAAACCCAATCCTCCCTTCTGACACACATGGTTGCAATAGAAACAGCTCCTCAACTGCCTGTCTGGTTTTAATCTGTTGTTTCTTGCAAGAGAGGATTTTCTGGGAATGTTAGGAAGAGAGCAAAATTACCAGAACTT-ACTATAAAATAAAAGTGTTGATGAGAAATCAAATTTTAAACAAGGGTTCAAACTCCTAAGCATGAACACACATAGACACACATGGTACGTGCTACGAGTATAAGA---ATACA------AAAGTTTAATATTTCAAGGATGTCTGAGGATTGCTCTAGTAATTAATTTATTTCTCATTTTAAGAAAATGCTTCATCTTACTTAAAGAAT--CCCAGAAGTAAAATGTTGTCATTAAACACAGT-------ATGTCAC--TTAAACAACTTGGAGA-----------AATTTTCTGTATGATCAAGTTTA--GTTTTTAAACTTAACTTTTTAAAGTATTTTAAAAGTATTTTATATGGAAACACGTTTAAAGT--------AAATTATACGA-----------CTTTTTAAAGATTCACCGTCATTATTAATAAAGATATTTGTTAAACTAAGCAGTCCCTGTACACTGCTCCTTTTAGAAGGTGGTTTAGAAGGTGACAGATTTTTGGTCATTCTTGTTCCAATATTAAAATGTTGTTATAAAAACAAAGTACAAAACTAAATAGAACTGGCTC
s HiC_scaffold_1 108984701 3221 - 233722169 aaaaacaactttcaagTCCATTCTCACTATGTATATCTCAGCATTTTCCATGGAAATGAGGTCAGTA------TGCCTGACATATGAATCCTGAGTTTAGcattatatctgta------tttttaaatggctcATAATTTGGGACTAATCAGAAGCTCAC-ATCTAGAACCAGATGAGCTACAATGGATTTACTc-----atcctatttttttta---actcaatatGTAAG-GAAAGAGGTAAATGAAGGTTCAATTGTTCGCTGAAGTCAGTAATAGGGATAGCATGCAGATCTTCAAGttcaac---------------tgaaagaaaataagagcaaAGGAAA-ACATTAAGTTGAA--CATCATTGGGTTTGGGGAAATCCAGTGAAAAGTGACTGGCTCAAATGGAATTTGTCTCAG-ATAGTGAGAtacataacatatttttaaagggatcttttgatttggtttttaaaaagatcaagatCTAAGCACTAGTCATAGTTAAAATCCTAGAATCATACCACATAGAAGTGGAAAGGAAGATAACAAGGGTTTGTTTACAAATatcaaaggagaaaacagaaaagaatctaCCTAAACGCTACTTCA---GAAGGTTTTTTGGAGACCTTTCTAAAGTTTACATTGTTCAACATAAACTTAAAAGTGGAAAACCAGTTCACATCCAGTATGATGGTAtggtggtacctcagttcatgagctTAATTCTTTCTTTGGTTGCAAACCAGATTGGACAGGAATTTGATTTCGTTCTCATGCAATTTGGTTTATGACCAGAATCATGGGAAGAACTGAGTTCAGAAACCAAGA---TAGCACTGTAGCTA---GGAACTGAGgctgatgtaaaaatagaatgtgGGTAGAGAGCACATAGATTTTGTCTCGAAGGTTCCATCATCTGGAAAACATATGAATAAGGGACAACTtgttaaaata------tactttcaaaagtttaattttactaattttaaag--CTGTTTTCTCCATGGAACATATATCCTAAAACTGAAGATGAATAGTGTGAGT-GGGAACACTGA-ATGGTTTCTTACAATTC--tctaaaagtattttattatagaTCCATAGTTAAGGGAACTattatttgtcttgttttaagACCTGTTCT----CTCATACTGGGTGAACAGATGAACTATTAACAGGCCTAGAGC-ATCAGTTTTCCTC-------CTGGTGCTGCATACTAAAG--ATTTTCCAA-ATAAGTTTTCTAAAGATTAGTAAGAACAAATTACTTTAGTTTGCTCTGTCTCTACCCACTCTTGCAGCCTTCTGCTAACTTCAATCAAAAGTACTATTCCA--CTGCTGTGAAGCAGG---------AGTCAGAGACCTT-AGGCCAAGAAGTTGCATcta-gtaattaaaaaaaatatatatcatcttTTCTCTTAATTCAAGGGAAAAGGTACTAAGAAAAATCACAGGCCATTCACAATCCTTACACTATACACAGT--CCTTGATTTTTATTAGATGGCATG-TCTAGAAAGTTATA--------ATAATGCCTCTC--------TTAAAACTC------atgtaaaaagataaattttctcATTATTGTTCTGACACTAGAACATTTACACTAAAACAATTTGCACTCTTCCAAAATTTACAGGAGAAA---ATCCATCCCTTAATGttagaga-------tggagagagaagtgtcagtttttaaaaactcaatacatgtggggctggggactcagctcagcggcataagcacttgcttggcaagtgtgaggtcgtgagttcaatccccggc-----------------actgcaaaaaaaaaaaaaaacaaaaaaaaaac-------------------ctcaata-----------------------------caTGTGCT---TGTTCTGAC---------------AGGATTGTGACTTTATGTGAAAACTTTTCCCGCCTGGACCATTCCTAGCCTCAGCTTCTTCAGCTTTACAGTA--ACGTCACTAAAAACAA---------------------------TGCACTCATCTGGAG----ACTAAGGTCTCTCCCATTCCTGCT---ATTTGTTGTGTGGTTTGGGTCAAGGTCTTATTATCTGTGGATCAGTTTCATCAACTAT-AAGTGTCTGGCAGAATTAGAATTAagacaaagcagaaaaagaataATTACCAAATCATTACTATGGTTTTCCACATACTTTGATCACTCTTGGAAGTATCTCACTCAATAG-----CCTCAC-------TTTGGTTTGGGTCTTTACAGTGGGTCCAGCAT-----GGCATGGCCAAAGAACTGCAGCCATGTTCTCATAATTAAGAAGAGAAAGATTTACTTCTATTATGGAATCAGCGC-TCTACATTAGAA-AAatcttattaaatataaatgaaaatgcatGGGTAAGTGGATTGTAAGTGGGTAAGAAAGTTTTGAATAAAACTGCCATCTAACTTTTGCAGTCTGTGAAATTCTTCTTTAAGTGAATAAAGGTGTAGAGCAACTCTCTATTAGCTTGTTCAGCACCGAACATCAACCTGACACTTAGAattaaattagagaaacaaaactggATACTTTGAGACTTAAGGGCTGATTATACCACGAGAGCTAAAAGTGGATTTAAACTCTTCC-TTATCCCACTTAAATCTAACTAGGTATAAACTCTCCATTACTAAGGAATAGAGGTGTGTGTGTAGAGGTAGAGGTTCCCCTTGATGTTCTTGGACAAGGAAACCTAATCCGTTTTTCTGACACACATGGTTGCAATAGAAACCATTCTGCAACTGCCAGTCTGGTTTTAATCTGTTGTTTCTAGCAGGAGAGGATTGTCAGGGAATGTTAAGAAGGGAGCAAAATTATCAGAActtaactataaaataaaagtgttgatgagaaatcaaattttaaacaaGTGTTCAAAACTGTAAGCATGAACATATGTAGTCATACA-----------ATGA--ATAAGAACTATGCATTCTATACAGTTTTTAATCTTAAGTAAATCTAAAGCTTACTTT--TAATACAGTTATATCTCTTTTTGCTAGAGTTCTTCA-CTTATCCAAATGATAGCTGTGGGGTAAAATATTATCCTCAAACACAGTTGTTAAAATGACACGGTAGGAGAATGTGAAAAATTCATTGGTGAATTTTCAGTATAACCAAATTTATCAGTGTAcaatataaacttttaaaatgtt----aaccaTTTTGCATGGAAACATTTCAGAATTTCTATTTAAAGATACACAAACATGTAATGTTTCTCTGAAGCTTTATGGCTACctttattaaaa--------taaactaaa-------tgtaTAGTACTCTTCCTAAAAG-----TTAGAAGATGGTTGTCTTTTGTTCAATCTTTTCCCAATATCAGAATGTTATTGTgaa---agagcacaaaagcagataGAACGGGTTC

a score=56234
s chr3            99139741 4469 + 160039680 [encoded data, 4785 characters]
s HiC_scaffold_1 108988682 3802 - 233722169 [encoded data, 4785 characters]

a score=50349
s chr3            99145800 3056 + 160039680 ttttgtattgatatgtacatacttatatata------------gggatatgttaaca------tatatgttcctacatatatttatattactatttatgtcaatagttatatgtTTTAGAAGAGGAAATGGTATTTAGTCAG---------------------CCATG-----------GCAAGCCTTATCTTACT------TTCCAAATATTCCAtaactgttattctatccattttatgaaagaagacagtaa-atccaggaagactcg---agtttcctga-gtcacagaaccagcagaccccagtaccaggatgccaacccagaactgcTGCTGCTGCTTGTCTCACTTGCTCAGAAGTTACCTCTTGTCA-------------CTGA------------------------------------CGTAGTTTGGGGAGTAGAGGACCATCCATAGCCCTTCTTGCTGGATCCTCCTTCACCTTCTCC----CCAGCCACACACACAACCCAGGCCTCTGAAATA--------CAATATTGAAT---TTAAGATATAGTTTGAAAA-----------------------------------------------CTGCTAA----GGCCTCCTTTAATATAAAGGAGAGT-TGTTGATCAGCAGCACATTTGATACATAGATTGTGTTGTAGGATGCTGTTCTGAAATGGAGTGGTTTGAGTGCTGTAAAAGGG-----------------GACTA-----TAGTTGTTCTGTTTACCTTG--CTGCCTAACTAGAGGGTGCATCATGTGCACTGTTCCTTTCCTGGTTCTTCCCATCATGTCTGTTCTTCCTTTCCCATCTTCTTACTTCCTCAGAGCTCTCTTTCCATGGTATGCTGGTGGCCATGCA-AAAGTCAATGC--------CACAGTTTCCCCTTGGGTC--TCTGCCTAGCCTAATCTCTAGCCATCTCATAAAGAATACATTTTCTGGTTGTGCTCTGATGTTAGTGTCCT-----------CTAGCATTTGAGAGCTTCT-----ATCATAAACAC---------------TGCAGTGCAAGCCCAAGATACTTCCTCCTAGATACTTCTCAGGAACGATTTCTCATTTGGCATTGAAGCTGCCATGCCCTAGTGTAACAGACTAGGCGCAGAGATGATTTATAGGCAGAGATGATACACTGACTCCAGCTTGAGTTAATCTAACTTGCCTG--GGCATTTGTAGATTTCTCTCTCTGTCATTTCGTAGGGAGGCTTGTAT--TTTACTGCCC-TGTAGGATGTAACA-GGTTTACCTAAGTTCCCTGTTTACCAA-CAGAGCAAGGCCATGTCTAGGTCATTGCACTGCCTCATCCCTGGAGCCCTGTTGGTCCTCTAAGCATTTACTGAAATTCATCTTTAGCTCTCTTTTCTCTTGACACAGCCATTGATTTTTTTCTTGTTATTTTATTTTATTCTCTTGAACTGCCCCTCTATTACCAGTTGAGTTGATTTCTGATTGGCTAACAGACTGTCTTTTCACTGCTCCGT-TGCCTCTTGAGATTAGAGTCAAGTCAAGTGGATGCGATGCCTGACC-ATGAAGATTCTCACTGGTT-----GCTCCATCCGTA-------------------TGCCAGGCCAGCGCCCAGCACTT-GGGATGTGCATCCCT---TCACTTTCCTGTCTCCGTTTCT----CACTGACTCATTGGTGAGCTGGCTGCTG---GGAGAGTGCAGCCCTGAG----------------------TGTCTCA-CTCCTTGGGATGTTAGTTG-TACATCTTTCA------------------------------CAACTTTCGCCTTGGATACATTTTCAAGTGGACTCTATTCT---CTTCAATAATATCTTA--TCTAACATAGCACTCTGTAATGTCCAAAATATTTCACATATTCTCGCTTAATCTTGTACACAACATACAGAATTTCATTATTTGGTTGTCCAAAATTTCTCCTCACTGGAAA-ACTTCCATTATGCCTTCTCCCCCTCTTTTTTTTTTTAAACCAATTCAGCGATAATGATCAATCTAAGTAAATAGCAATATTCTTTCAAGTTTTAATTTGGTGACCATTTTCCTATTTCTATCAAA-TATGTTCAATACTTTATTCATTTTGGGGCCCCAGTCTGATAGGGCT--AGTAATTTCAGTTATTGATAAGGCTGATGATAATGGGGGGG-GTGATATAGTGCtagcaagcattcatcaaatgcttaccttgttgccaagggcagttttcaaaggcaccagatatgtgttagctcatgaagttctctcaactca----actaggtcc------------------acaaataagaattctgggagggtttaataagtcacttaaggtcatggaattcacaagtgt--------cagagccaacatatgagcccagttatcctgattccaACCCCTATATACATGAACTATAAAACAGCAGAAACAACT---GCAAGAAACCATATGTGTTCATTTGCTGATAACTGCTTTGAAAACGTCTAAG-TGTCCCATGGATGCTACTTTT----CTTGTCACCACAACGTGAAGGGCAGACACTGAGTCAGCCTTTGCTGAGTCAGCCTTTGCTGTTGCCATTCTTACTGTCTTGTTAGGCAGCATGAATTACGGAAATGGAACAAGGCTGTCTTGTAAATTTTTCTGAGTGTTTCCAC------TGGCCACTGCCACTAAGATTACCATAGATAAAATAAGG------CTTTTAAAACATGAGTCCCAAGGTGCATGTAGGAAGTTATAT----TTATA---------TATTGTAGCTGAAAGGTCAGCCTGGACAGAGCCCCTCGGGCA---GAACAGAGGTGGCGAGTGCTAAATCTGA-GGCTGACTGGGGGATCTTTGTCTGGCTTGTAGTTGTGATTTATAGTGGGAATACTTTCTTCAAGGA----GTAGGAGTGGGTGGTGGCAAGGCATGACAGCCAAATGTAGT----GCTGTTGGCCCTCTCTGCAGAGGATAAGGAGTCTCACTTG------------TTAGTGGAGCTCTTAAAGAGGTCTATAATTCACTAATTGTAGCGTATTGACTTGAGTGATTACCCATCAGTACATTCTCTGGGATGAAGATGAGGCTTTAAAATTAGCACTGTTGGTTGGAGATGACTGTGTAGAATGATTGAAGGGCTCTTTGTTAACTCTTCCTTATATTCTCTGTGAGTAGAGACTGC--------------AGACATTCTATTCAAATTCATTC------------ATCCTCAGGAGTCCTTTCGGGAAGCAGAAGGATGCAATGGAGAAGGGAAATGGAGATGTTTGTTTAAATCCTTGGTTTCG---------------------------TCTTAACAGGTAGTTCCAGAAAATGCTGCAAGATAGAAAAGACCCCTTGGGTTAGGGACAAGTGTATAGTAAAGGGGG
s HiC_scaffold_1 108993890 3317 - 233722169 TTTTTCTTTGATATACAAATGCTTTTAAGCATCTTTCTTGAATAAGATATGTTCACAAACCAAGATATATAGTTAcatttgtgtgcat--atatttatttctata----tatctTTCAGGA-AggaactaaaatttaaataaggCCTACTACGCTCAAAAGCCCCATGCTATATGCTATACATACTTTATCTTATTAACTTCTTCCAACATTTCTGGAAATATTATTCTCCTGGTGTTATAAAAGAGGAAACTGATATTCAGAGAGATTAGGTCATTTTCTTGAAGTCACGG--CCAGTAAAG---AGCTCCAGGATTCAAACCCTGCTTTGCTTATGCT--TTTTCTTA-TTGATCAGTAGTCATCTCTTGTCAAATGAATTTTTACCTGAATACCTGTTAGATAAAGCACATAGAAATATAACCTTCCTGGTTTAAGAGGTACAGAATC---------------TGTTTGTTCAAGCCTCACCTTCTCCATCCCCTACTGCACCCAAACCAGGGGCCTCTGAGATAGTGCTACACAATCTTGCATCTCTTAAGATGTAGTTTGAGAAAAACTTCAGCTTGCTTTTCATGGCCTTGTATTTCTCAAGatgcagtttttttaaaattggctttCTTAAACATCAAAGTGAGTCTGTTAAG----ATCATGTGTAATTGGTAGATTATTTTTGAGAA----GTTCTATAA--AAGTGATTTGGGAGTATTAAGATtgttatatatatgttttatgactaacatataatatttttgtttatgttaaactatataagtacaaaaataataggaaacatttttctttcc----------------------ttctttatttttccacaaTTTATTTCTACATAA-------------GTATGCCGATCTTTGGGCACAAAGATGATGCTGTAGATGCACAGGTGCACACTAAGCCACTCTACTCTGTCTACTACCT-----CTTCACAAAGAACACTCACTCCa-ttctgttct--tgtttctgtTCTACCACCACTGACCAGGACTTTAGAAGTTTTCCTAAATTCTAAATGTCTTCCTAACTTCTGATGAAGTGTGAGGCCTAAAT-CTTCCTCCTAAAT--TTCCAcaagattttttcttatttagggTAGAAGTTGATCTGCCATAGTGTGAGACATTAGCTGCAGGCACAT----------GAGATGACACAGTGATTCTAGCTTGACTTAAT------TGTATGCAGGAATTTATAGTATTTTCTGTATATAATT-CTTAACtaattctgtatcttttattgCCTATTGGGGACATAAtacttttttcctaatttcctaGCTTACTGAGCAAAGCCAAGTTATACTGAGGTGGTTGTGCTTCC-CGTCATCTGAGTACCTTTTGTCTTCTGATCATTTACCAGAATTCATCTATATCTCTTTGTT----TGAAACATGCCTTG--------CTTGTT--------------TCTCAAGGTACCTTTTCATTTGTAATTGAACTTACTTCTG----GCAATTGAACTGCCTTTTTGATTCTTCTTCTGCCTCTTAAAAGCAGAATCAAGTCAACT-----TGACCCCTAACCTGTGAAGATTCTCACAGCTTCCACTGTTCTATCCCTTGCTATCCCTTTCTATCCCTTGTCAGGATGTCAGCTAGTATTCAGGGAtgtctgtttctcttttactttcctGTTCTCTTATTTTGACCGTGGCCTTATTACAGTGTTGACAGCTCCACTGAGAATGGAACCTTAAACAATCTTGGTCACATTGCTTTCTGTCCCAGTTTCTTAGAAGGATAGTTAACAGGTTTTTCAGCAAGGTAGTTGGACTTCCAAGCAAAATATCAAATCTCATCTTGTAAGTGTTTTCAAGTGAAATCTGTGTTGTCCATTAATAATATCCTAACCCTAATACAGGACtttgtattttccaaaatatttcacatattctCA-TTAACCTTG--AGTAACATACAAAATTTTACTATTTAACCATCTAAATATTTTACTCAGTGATTATACTTTCAGTGTGTTCTCTCTCATTTTT-----------ACCAATTCTATCATATT-------CTAAGTAACTGattgtattcttttaaattttagttcactgggtattttctttttggtgttaaAATCAATTCAATATTTAATTCAGTTTTGG-------TCTGATAGGGCTTTGATAATTTCACTTATTACTAAACAAGATGCTAATGGGTAGGTGTGATAAA-----AGCAAGCATTTGTCA------------GTTGCCATGCACAATTGT---AAGTACTTAATATGCATTAGCTCATGAAAATCCTGCAACTTACTGAAGTAGGTGCTATTATCAGccccattttgtagatgaggatACTGGAAAGGTA-AATAATTCACTCGAGGTCATATAGTTGGCAAGTATATTTTGGGCGGATCCAAAATATAAACCTAAGTAGCCTGATTTCAAACTCTG----AACTAACTATAATAAAATGGTGAcaaatttcataacaaattaCAGTTGTTATTTTGCAAATAACTGCCTtgcaaattttaaatcttttccttgACAGCCACTTCTATATCTTCCCATGGTAACATACAGAGTAGAAATTA-------------TAAATCATGTTTTG-TGTTGCCGTTCTTATGGTCTTCTTTGACTGAATGAATTATGAGAAATATACAAAGCTGTTTTACAACTTTATCTTAATGTCTGTACGGTATTTGACTACTGCTACTAAGATTACCttgtataaaataaaagcttatattttaatacataaatcCCATAGTGCGTGTAGGAAGCTCTGTATTATTATAGTAGTATTATTCTGTAACTGAAAGGTCAACCTGGGCAGGACCCTGCAATCACTGGGACAG----GCTGAGTGCTAAAGCTGATGGATGACCAGGGG-----CATCTAAGGTGTAGTTGCAAATTATGGCCTAAGTGCTTTTTTTCAAGATGTAGCAGAATTACTaagtgaaaaggaaagagagatgaAAGTAATTAATACCTTGGGCCATTTCTATGAGAGAGAAGAATTTTATTCTAAAGGATTCTCCTTTAAAGGAGATGTTAATGAGGTCTAAGATTCACTAATTATAGGATATTAAGGTGAGTTATGACCAGTCAGTACATTAATTAGGATGCAcgtgaagttttaaaattcacaC-----ACTGAACACAGTTTTCTATATCAAAAAAGAGtcttctcatc--tttttccttttattccccaCGAACCAATACTATATGAACCATTTACAAGATATTC-ATTCAGCCCCATTCTGTACACCTGGTATTCCCTGGACCCCTGTTTGGAAGCAGGAGAATGTAATAGTGAAGGAAAATAGAGA--TTTACTCAAATTTCTGATTTGGATTGCTGTCCTCCCATGGGGAGAATTATCTAAGCAGACAGTTCAAAAACTTGCTGGGA-----AAGAGACTTCTTGAGTTGGAAGTAATTATGTACTACAAAGGG

a score=39470
s chr3            99149712 2539 + 160039680 ttactttatagcttttgctaggctcaaagt--tgcaatcctcctgcctttgtttccct------gggattacaggcatgcatcatggtgcttagct-----------------------------------------------------------GTTTCACCAGTTTC------CAAAACTATGGACAACTTTTGA--ATGAA------CGTCAAAGAGTGGCTTAAACAAAACAGCAGCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGTATGAAAACATTCTAGAAAGTTTTGTTCTGAAGCTGGAGGTAATCACTTCCAGTTTCAAATTATATCTTGCATTTTGAAATTGGATGAGCCTTCATCCCTGTCT-ATAGAAACGAACACATGCCTCTTTATAGTCTGCCTTTGTTTAAAAACATTTGCTT-GAGACAGATGGAAGATCATGCC--------TTTGTTCTATAGACTATTTTTTGCACACTCC-----AGCAGTTCAGTATGCATTGTTTCACAGGTGATCTGTAGGTT-CCACTTAACATGTAGAGCTCCCAGGACATTATGTTCCTGGAAAATGTGGATGAGCCCT------------------TCCTGTTGAGTCGAAGCTGTGATAAGTATATGTGTAATAAATG--AGTCATTACTTAAATCCTTGGTGTTGTGATTCTTACGATAGAAAACTCCAACAATTATTTATTGA----ATGAAGTCAGTGAAAAACATAATCAATGCAGTGGCACAGGAGAAAATTCATAGTATTGATGTCAATACTCATGTTGTTGAGTAGGAACCATA-CATCTTAATGTACTTTGTGCT-TATTGATTACATCTGATG--CAGGGAGTGAGCGGAGT-------TGTTATTTCCCAGTATATCTAGGCATTTATGTTATTGGAAGTTACTGGCAATTGTGCTTTGGTGATTGTCCAAGTAGACTGTAGGTTTCTAACCCCTTGCTGTGGCTGA-----AGATAACTTTG--CCAGCTCAAGTCTTATTGTTCACAGT-ACTGCTAATTACACTGGGGGTTTTATTATACCAAAGTTTGCTACTTCTGTGTACTGGGAAGTGTTAAGATTCAGAAATAAGAGGAAAAGCTTTTATTTAGAAAGAT---TTGCTTCAAGGAGCCGTCTAGTTCAGTAAATGTGCTGTGTTATCTATACAGTAGTTACTGTTATAATATGTTGTTATGAAT----AAGATTTGCTTTTTACCTTTTAGGAAGGAGATGA---GAACTCATGTATTAATCGTGGGTTGTTTTTTTCTCATTCAGTTACCAATTTGAAGTCTCTCTTTTTTTAAtttttttaattagatattttctttatttacatttcaaatgttatcccctttcctagtttcctctccgaaaacccccactcccctgccccctccccctggtccccaacccacccactcccacctcctggccctggtattcccctatactggggcatagaaccttTTGAAGTCTCTTTCAGGCAGCATTTTGAACCATACCTAGTACTTTTTGCCCTGTTGGTGTTGGTAAGCTCTG------CATAGAGAGCAATCC------------TACCATGAT-CGACAGGGACAGCCAGGCT----GAAAGCTTCTTATGCAGGGTATCCCTGCTTTTACTTGTCCCATGTTAGAGTGG-----------------ATTATTGATATGGTCAAG-TACTACAAATAATTTATGTGTTCTT---TCAGAGTGGTTCATGGCACATTGACATCTCCTCAGAGAAGCTCTATTGTTAGA---TTCTCATACTAATTT-GTCATATGTGTGTTT-AATAAGCCTTAAATCAACCCATGG---AGTCACAGAGTAGTCATGGAATATCATGTTTCTTATAGAGAGTAGGATGGGTTGTAACATCTCC---------TGtgccttacactatttaggctgcttcagtag--taccatagattgggtagtgtaaacaacagccatatagtttttatacttttggaggctgagaagtccaagactaaggtgctagtggattctattgctggtaagaggcttctttatagtttatagggagctgccatctcactgGG-----GGAGAACATGAGGTCTCCGTAGGATCTCT--CAGAAGGACAGCAATCT-----GTGAGAACTACCCTCTCCTGCCCTAGTCACCTCCC-----------------------CTGCCATCA----GGGAACTAAGATTCAACATAAAGTTTGGGAGTTCACAGGCATTGTCTAATTTAA---GTGATTTCAGTGGCCAAACATCTTACAAAATTAAG----ACTGATTTTCACAAATCTTTGAAATGTGTTGGATGTTCCAATGTTTCAGTGTTGACATGACACCTACCAGCTGTTTTTCACATTCAAACATGGAGCAGAAATTCTTTAGCTGACCATGTGTCCTTAATTTTGATTGGGAATATATTAACATATTTATGACTTAAATAGAGACACAGCTTGTTCTCTGATTTTTTTTTTCCTAACTAGTAGACCTTTTGATCAGGTTTCAGTGATATTTTTCATTTTGAAAGTTACAAGTTCGCTT-TAGATCA---TATGGATACAGGATACAGGATTAGCCACTTCCATTGGTTTAAATGCTAGATGGAAGGGGGGTACGGGAAGTGGCTGGCTCTTCGAAAATTAAGTTACGAGGCTATGATCACTAGTGAAGTTACTGTCATTTGAACAGCA----------------CTACAGGAAGATGATTAAGG--ATGTTATATGGGGA
s HiC_scaffold_1 108997422 2507 - 233722169 tcactatgtagtccatgctggcctcaaactcatggcatcttcctgcctcagactcccaagtccaggaattataagtgtgtgtcaccatacctggctcattttactttgcttttatcTCTCTTAGCAGACCTTTCTtcccatctttatctttctgtatttctctattctttaaaagcaaaaatatatacaGCTTTTGAGTATGAAGCATACCTCCATGAAATAATTTAaaccaaataaca----------------------------aaatttatataaagtttccaggaattttttttctgaagctgGAGATGACTGCtccc---------------------ttttgaaattttataggaTATTACATCTTTCTTATAGAAAT---TACAACTTTCTCTATATTCTGTCTATGTATAGG--CATCAGCTTCAAGGTAAAGGGAAGAgcatgctcctttttttttttttttaagtcctatTCTTGAACACTAGTAAGGAATGGGCCAGTGTGTCTTGGCTTAAGGTAGAGCTATTGGCTGCCAGCCAGCAGGCCAACCCCACCAGGCAGTGTGCTCCCAGAAGACCCC-ATCAGCCATGAAAGACAGTAAGTATTCTTCTGTCATACCTA-GCGGTGGTAACTGTGTGTGTGAGAGATATAAGTTATTACTTAAATCTTTACAA--ATAACTGTTGCCTTAGAAGACTTCAGTCAGTATGTAAGGAGTACATGAATTCAGTGTAAAACAAAGTTAATGAGGTAACACATGAGAACATGCAAGACATTGACATTAAG---CATATTGTTGAatataaatgatttcatttttgtgtatattttggtGTACTAATTACAAAAGATGATCAGTGCCTGTTAGAATTCAtgtcatattatttttcaaagtatctAGAAATT---GTAATTGAAAGATATTACTAATTCTACTTTAGTAGTTTTCCA-GCAG-CTATAGATTTCCAGTTTATCACAataacagacttttaaaaaagtctAATCTAGCTCTAACATTATTTGTGAAAGTCACCAGTAAGTGTATTGAGGTTTATATGATACTGAAGTCTGTTTACTCTATATATAGAAAAGTGTAGACAtatttgatttaaagaaaaagatttttctctGAATGTTGTTTTGCCTCAAGAAAC----TAGTTTCATAAATACTCCCTATTACATATATGATACCCAACGTGatatt-ttttgctgttattttcaaAGCTTTGCTTTCTTCACCTTGTGAAGGAGTTAAAAAGAACTCATTTGTTA-TGAtgctattttccttttgtattcaGTCATCCATTTCACGTTCCT------TTAAAGT----AATTTGATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCATT---------ACCTAATACTTGT-ACTTTTTAGGTGTTGGTATGCTCTGTATCCACATAGACAACAGCCTGAAGGCTTGCTGTATTGTTACATGATACAGATAGCAAGGCTCTATGCGACCTTTCAGTCTAATGTAACTTGGCTTTTCCTTGTACCATGATAAGATGGTGATGCAAACAAGTTTTATTATCTACATGATCAGGATAttgcaaataatttatattttcttcttttaaagtgaatt--------ttgttATTTGATTAAGAAAACTTTATTGTTATAAAGTTTGCTTActtattttgtcatttatatgttttaataaaac---aataacaacgTGGCATAATCACAGACCTATCATGGAATGTCATGTCTGTTG-AAAGAAGAGGCTTGGTTGTACCATCTTCAGACTAATCCGTATCTTACCCTATTGAGGCTCCTATAAAAAAACACCATGGACTGAATATCTTAAACAgcagatatttatttttcatggttctGGAAGCTT-GAAGTCCAAAATTAAGGTGCTTGTAAATTCCATGTGTGGAGAAGCGATCCTTTCTACTTTATAGATAGTTGCTTTCTAGCTATAACCTTGTGTAACAAGAGGACTATCTGGGGTCTCTGTTGTAAGAGCACTAATCTCATTCAAGAGGGCTCTCCAGTTACAACCTAATTTCTTCCCAAATGTCCCACAATGTGGTCCAACAACTATCACATTGGGAATTAGGttttaacatgaattttgg-agggcaCAAACATTGTGTAGTTTATTCTGTACCTTCAGGGGCCAGACATTTTGTAAAATCCAGGACCAGTTGTTCCCATAAATCTTTAAAACATCTTGCAAATTCCAATGTTTCAGCATCTACATAACATCTAACATAC-TTTTTCACATTCTAAAAGGGAACAGAAATTCTTTAGCAGGCCATATGTCCTTAATTTTGATTGGGAATATATTAACATATCTATGACTTAAGTAGAGAT---GTTtgtt---tgtcatatatatatatatatataaaacct-----tcaGGTTTCTACAATACTTATCTTCTTCATAGTCACATGCCCACCTGTACGTCAACCTATGGATATGGAAT----------CAACTTCCATCTGACCACTTGTTagaaggaatggagaaaaagaaaagg--------ctcaaaaaaca----acaaagctaTGA--------GGGTTCATTTTCTGCCGAGTAGCACTTAAATACTTGTCTTCTACAGGGAGATCAACAAAGGCATGTAATGTAAGAA

a score=8929
s chr3            99154857 251 + 160039680 AGAATATTGACATTTATGATGT-TAAAATGGTGGATTATGGT---------AAGACCTCTGGTATAGCATGG-ACTAAACAGTTA--GTTGAAATCA--GACAAATGTATGGAAAGCTAGTGTGCTGGATGGTTCAAATGCTTGGTACTAGAACTCCCTTGGATAGCAGAATTTG-------ACAAGAACCAGATTCCCAAACCTGTAGTAAATTTAAGAGCATATCCAAGAAGTGGGAGATAGCAATAAA-GGCTGT--GTAAGTGAAAACACCA
s HiC_scaffold_1 109002703 275 - 233722169 AGAATATTGGCATTTATCATTTCTAAACTGGAGGAATTTGGTTTGATGATAAGGTTCTGGGGTACGACATGGGAATAAACGGTTACAGTTGAGAAAATTAACCAATGTATTGAATACTATTATATTAGATGGATCATATACCTGATAATTGCACTGTCTTAGATAGTGGAAATTAGAGTAGAAAGAGAACCAGTTTCCTAAGCCTTTAGTCAATTTAAGAGAATATCCAAGAGATGGGA-ATAGCAGTAAAGGGCTATAAATAAGTATAAACATCA

a score=62389
s chr3            99156549 1817 + 160039680 AACACAGATGTCTAAGGTT---GCTAGCTGATTCTGAAATTCAGCCTTTACAAGAGAACCTGTAAGATGGATGATGCTGCCAGAACAT--TTAGAGCCT----GTGcacacatgcatacact-cagacacacacacacacacacacacacatgaacacatacacacacataggaatacacagacacaagcatacacacagacacataaatacacatacacacacacacactcacacacatttggttatagttttgatGGCAATAGAAG-----TGAAAATATTTTCCTCACAGGAATGAAAAT--CTTTTCAGAATATTAGCAGCACCATCCATCAGAGCGTCGCAGAAAGCATCGTGAGAATGT--GTGATTAGAATCGATCAGATATTTGGCTGTCTTTTTCAACCAAAAGATGGATTTGAACCAGATTACCACTTCTATGACTTAGTTTTGAAGAAAGAGGGGTGTGG--GGGAAGGCAATTATTTCTCTCTTTGTTCAAAGGCCTTTTT----------------GTATCTTCAATCCCTGAAAAGCTAGTGGAGGAGCCAGCCTTTCACATCCATTAAGGTCAACCCTGAAACTGTTGAATTTGATCTCTTCCATTTACCATCTGGATACAGTAGAGAAAAAGCTATTCTGCAGTGGGTTGCTGGACACCATCCAGAAAATAATATGTCAGGGCATCAAAGGCTTGAGGCTCTTGGTCCATCCTGCCTAATGATCACAGGCAGGGTCTGTGCTCCAGTTTTGTAGCATGTTTCA-TTTTTGCAGTGACAATTTATATCCCAGTAAAATAGATCACAAGGATTACTGCCAGCTTGTCAAAGGTAGGATTCTTCTATCATAGACGTCCTCTCAAAGGATTGCATTTTAATTGGGCAA--------------AGCTTGATTTCCAAAGTTCATTTCTCTCCAGTCCAATCTGCCTTCTTTCTCATGGACAGCACTTACTTACTTGAGGAAAGATTCTAATTCATACACTGTTTCATTCCATACCCAAGTTCCCAATCTAAAA--ATCTTAAAATTGATCTTATTTAAATTGGTTAGTATTCATTG---TCTTTATAAGGGAGCCTGGTGTCAGGCCTGCTAATG---TTGCTGGCCGTTGTCCAGGAATCCGACAACCACATCTCCTTATTCACACCAACTAGAGCCACTTGTGGCTGGGTTGTTTTTATTCTGAattgattgattgattgagtgattgattaactgaACGTGGATAAGAAGCAGTGGCAGCAGCATGTCCTGT-GTCTTCCCTGAGAT---------GGGAGGAGACTTGCAAAATAGGACATGTGATATCAGAGAGCAAATGGCTGCA-TTTAAGATAACAGGAGACTATCTAATGCTAGACTCTGATACAGCA-GTTTTCCTTTGGATCTCTGCAGGATGTACCCAGCCGT-AACTTTAAGCTGGAGTAGGGaaaaaaacaaaacaaaaaacaaacaaacaaaaaaataaaACAGCCATAGGAGATTGCCTTTGTGCCCCTTATGGTGAGAAAAGATCACAGGAAAACCATTGAAACCCTGACAATAAAAAAGTCATTTTCCTGTGGCAAGGGCAATCCTCAGCCTGCATCTCAAACAGAATGGCAGGTTACAGACTTCCTGCTCAGACCCAGGAAGCTGGAGTCACTGT--GTGAATTCCAGC-------------------------------------------------------------TGCCATCAGAA-----------GGCATGTGCAGTGCTTCTAGGTTTTGTACTCTGTCCATGTTCTCCAGGAGGTCCATGGCCTCATCTCCTCATCGGGGAGGACTCTCCTCTCTAAGAATCTTC-TGTGCTTCTCTGCCTTTTGATTTCTCTATGCTGGGAACAAGAAGCAGTTCTTCAGGATTATGTCTAACAAATAAAATCTC
s HiC_scaffold_1 109006241 1806 - 233722169 AGCACAAATAGCTAAGGCTCATACTAGCCAGTGCTGAAACTCAGCCTGTAGTAGA---------AGTGTGATAATCTCATTATAACCTAATTATAACCTAAACGTTTAAGAATTCTTGCattgcagacacacacacacacacacacacacacacacacacacacacacaca-------------------------------------------------acctacatacatacatatatttggtTAAGAGtttgaaagaaatagaagaagagtgAAAATATTTACTTGATGAGTATGAAAAGAACTTTTCAGAATATAAAGATTAATG-CCATCTGAACTTCACAGAAAGTATCATAAGAATGTCAGTGATTAGAACTGATCTGATATTTGGCT----TTTTCAACCAGGAGATGGACTTGATTCAGATTACTACatccatggttttgttttgaag-------gGTGGAGCAGAGAAACCAATTATTTATCTCTTTGttccaggccttttttttttttttctcttcctgtacTGTAGATTTCTGAAAAGCTAATAGAGGAGCCAGCCTTTCATATCCATTAAGGTTATCCCTGAAAATGTTGAATTTGATCTGTTCCATTTGCCATCTGGATACAGTAGAGAAAGAACTATTCTGCAATGAGTTGCTGGACACCATCCAGAAAATAATATGTCAGGGCATCAAAGGCTTGAGGCACTTGGTCCAGTCTGTCTAATGATCACAGGCAGGGTCTGCTCTCCAG-TTtgtagtatgttttattttttgcagtggcAATATATATCGCAGTAAAGTAGATCATAAGGATTACTGCCAACTTGTCAAAGCTAGGATACTTCTATC--AGACTTC--AAAAAAGGACTATGTTTTAATTGGGCAAAATTACTGAAGAGTAATTTGATTTCCAGATTACTCTCCTCT-CAGTTTGATCTATCCCCTTTCTTATGGTCCGA----ACTTACTATAAGAAAGATACTGATTCATAGATTATTTCATTCCGCACccaaattccaaatttaaaatcTCTTTGAGATTTACCTCA-----------TGGTATTCATAGTTCTTTTTATAAATGGGCCTAGTATCTGGCCCGCTAATGACCTTACTGGCAACTTTCCAGGAATCTGACAACTACATCTCATTATTCACACCAACTGGAGCCAATTGTGggtaggttattt---------atttatttattttttg-----ttacttta--aaatgtggataggaagaaacagcagtggcatgTCCTCTAGTCTCCTCTGGGATAGTGGGGGCGGGGGGAGACTTGCATAATAGAACCTGTAAT----GGGAGCATATGGCTGCATTTTAAGGTAGCTAGAGGCCATCTCACCCTACTTTCTGATACAGCAGGCTTTGGTTTGAATCTTTGCAGGATGTACTTAGAAATGAGTTTTTAGCTTCTGTAG-------------------------CAGACAGAA-----------TTATGGGTAATTGCCACACTGTCTCTTCAACTGAGATGGTATGACAGGCAAAATTGTCAAATCCTaaccat-aaaaattatttttcttatgaacaAGATGACCCTCAGGTTGCACTTTAAATATTAGATCAACTCCCAAATCTCAGAACCTTATCTAAAAAGCTGAGGATgctcttggtgaattcttgtgAAGCAACAAAAGAGTTTTGTACCTGTTTGTGTTCCTTTGTAGGTCcaattttagtgtatgtgctgttAAAGTGAGGACCCTTGGTAGGTCCAACGTGATTATTTTTTCTACTCCAAACTGGTTCT-------GTTTGTACTCCCTGCTTCTCATTATTAAGGGA-CTTCAATCTCAGAATCTTCTTGTTCTTATCTGTC-TTAGATCCCTCAATACTGAGAAAAAGTACT--TTTTTCTagattaagaaaaagaaacaaaatctc

a score=7249
s chr3            99166096 462 + 160039680 tgtctggctTCTCTTCTA----------CTCTGCAGGCCAGAGTTCAGATGTTGTGTATTTCAGGATTCTTCGCAC-ATGCTCTATCAGAAGTAGGTACTCCT-------GCCCGATTC------TCTTCTTCCTGGTCCTAATCACGGTCTTCATTTATCTTTTTTCCTTTTTATTTT---TTTTCCAGATCTTTTCCTGGAATTTACACTCTATAATATTAGGGCCT----------------------------------------------------------------GGTGGTTCT----------------------------AGTAATTGGAACTGTGTTTTGCTATTTGAGTTTATAACTTTAAATAATCCTGTGTCCTCTGGTTCTCAGGAGGAAGAGCATGGAGACAAAAAGATTCGCAGAAAGGCTTTTAGGCAGGGGATGGGAAGGGCCCTAATAGTGTGGAGGTGAGGTAACTACAATGAGTTTGCCGCATGGATGGACACTAGGTAACTCTAACGAGCCTGCTACATCTCCATGGGTTGATTTGGGAGGATG-CCTTGGCATGCTGT
s HiC_scaffold_1 109011035 550 - 233722169 tgtcttgcccctttttaaaatttattccctCTCTaggt-aaaattaaaaagttatatacTCCAAGATACTTCTTGTTGCATTCTGTCTAAAGTAGGCACATCTATAatatgcttaatttctttttttttcttcatggtaCTAATCATGTTCTACAGttatcatatttatttgtttccttgAGTTTTGCatgatttttcctaaaatttaagcTCTATAATACCAAGATCACAGAGTAGGCActgcagaaatatttattaaatgaccaTCTTTTCCACTAATATAATGTTCGTAAGGTagttttttaatctcttgaaacatcttttttttaaaaaaactagaa--atgtTTTTATGTATAACTTAATGACTTTTAACGTTCCTGTGTCTTATGGTTCTCAAAAGGAAGAGAACAGAGGCAACAAAA-TAGTGGAAAGGTTATTATCAGAGAGACAG--------------GCGTGAAGAAAAAGTATCC----TAATCTTAC---------AGGTGTTAGTTAATTAAAAAGAACTTGTTACATCTGCAT-GATTTACTTGGGAGGATATTCATGGTATTTTGT

a score=20548
s chr3            99170182 428 + 160039680 tTTTGTCCTTAGGAGCTATTGCAGTAGAAACCCTGACCCTGTAAATCACTGCAGCAGCAGATGAACAAAGAACGAACTAGATTTCAAAATACTTTGTTTTCAGATGTTACTTGTTGCGTTGAAGTCATCATCCAACATCTGATTCTGATTTTGAGATTCTTAATTTGTTCTTTTTAAAGATTCAGTTTTTAAAAACATAAACACATTTCCACTCAGTTTTCCCATGAACCCCATCCCATAACTCAACTCAAAACATCCTGCT-CTGCAGCACCCTGCTGTGTTCCACCCACTGCTGGATCAGGACCGC-CCTCGGTGCCCGGTGGACAGACACACACAGTGCTTGTC-CCCATAGCAGCAGAAGTGCCTTGTGCTGTAGACTAGACACATACTCAACCTAAATGCAGAGTTCATC---AAATGAGGCTGAATTC
s HiC_scaffold_1 109014254 424 - 233722169 TTTGGTTGTTAGGAACCATCACAATGGAAGCCCTGACCCCTTGAACCATAGCAGCAGCAAATGAGCAAAGAACAAACTAGatttc-aaatgttttgttttccagtgttATTTGCTGTGTTGAAGTCATCGTGCAACATCTGATACTGATTTCAcgattctta-----ttctttttaaggattctg-atttaaaaacataaacacatttCTACTCAGTTTTCCCATGAATCTCAGCCCTTAATTTAACTCAAAACATCCTGATCCTGTGGTGTTTTGCTCTGTTTCTACCCTTGCCAGATTAGGAATGCTCCTGGGTGCCTGGTGG---GGTGCAAGTAGTGCTGTTCTCCTAGAAAAGAGGAAATGCACTGTATTGTAGATTAGACACAGACTCTACCTCTGGATAGAGCTAGTCAAAAAATCAAACTGAGTTC

a score=43347
s chr3            99171066 1681 + 160039680 GCTACTGGGCTGTGTCGTATTTTTAAAATTTAAAGTTTTCTCAGGATAGAAAAGCAGAGCAA-------AATCTCTTCTTTGCAACCCAGATGATGACGTTTCAGA-------------TCTTTACCCAGCTTGCTGTGGGCCCGTCCTCATAAACCAGCTCTGCTCCACTGGTCCTCGCCTTTCTCATTCTTC-TCCCTCTCCTGCTTC--ATGGGAGGGGTTGGTTCCTAGTGCCTTTCTGAAGTAATTGTGATTTCGAAACACTAATATCAAACCACGAATCTGGTGCTTTGCACAAGAGTTGCCCATGGGTTAGAGTCTGAGGCAAGCACTGCCCTTGCTCGTAACATCAAGTATTTTACCCTCAATGACTGCCCAGCG--TAGCCATTTGTCA------------------CCTGCAAGATGCACTTTTAAACATGGCAGGTGGCACTGTGAAGAATAAGAAGGCCATTGCATTGTTTATGGTAATTGTTGTACCTACTTAAATGTAGTTGTAGAGAATTATTAACAATATGGAACCTT------CTAATTGGGAAGAA---ATCTCAGAACCTCACAAATGAC----ATTTCAAATGTTATGGTTGCAGGGAGTGTTA-CTGTGTGGT---GACGCTGTTGGGAACAGTTATCAGTTCTGACTCAAAGGATATTTGCAAGGATAGAATGTGATGATATGGAAGACATAAAATA-GATAGGTAAAAAAGCATGTGTAGAA-------GGTACATTGGAATAAAGGCATATGCTACTAAAGCAAGTGATGAGTGTCCCATTGGTGAGTAGAGGCAGCCTTCTGAAGTTGTTAGAAAGGCAAAATGAAATGTGAAAGAGGACAGCTGTCTTGG-TTTACATGCTCACACCTTGATTGCTATGAGGATGCACACGTTCTAAAC-AAATTATTAGAACG----AGAGCAACAAAAGTGTGTGCTGTTGCTTCACAAGTGGGGGCTTGCTTCGGTTTTATTCACCAATATGTGA---ATTGGTGACTTAACAGAATGAAAAA------------TTATA--AACAATCAAA-----GAAGGCTTCCTTAATTACAGGATGTTGAATTTGGTCAGGCTTGA------AGACAGCTAAGGCTGTCTTCAAGTTATTCATGTATATACAACACA-GAGTGAGTGTAAGCCACAATCAGGATGGCACCACTGAACACAAGCAGAAAACTGTCCTTGATGGCAGAGTTTCAAAGGAAGAGGCAAGTTCTCACACATGCAAA--TCTAACGCTGATTAGTGAGTTTGTGCAACAGAAAGCA--GAAATGCTTTTGAGACCAGTACCTCTTTGATAGTGTCCTCTCTGTGTCTAGATGCGCATGATCAGCTCTCTTCCAAAGTTTTATAAAAGACACCAAAGATAGGACCTGCAGGAAGCAATGTGGCATGTCAAAAATATATTGGGCTATTTGTTCTCTAACGTTATGGGCTGTCACTGAGACATTCCAGAGATTATTGGCATGTGCTTTTGAACATAAAGGGGGATGATGGATTAATGGTCAGCTGACACTGATTTGCAAATTTGAATCCCACCCCCC-----AGTTTATTAATTATA-ATACTGTGTTTTAAGAATTCTTTCTAAGGAACTTCAAAGAAAAA----TCAGACATGTGTATTTGGTTTTTCAAAAGGTAAAAAAAAAAAAAAAATAGTTCACTGTTTATTTTCTTTAAAAGAAACCTATATCTCAAAACCATTTGTGCTAGAGTGACTATGCaaataaataaataaataaata
s HiC_scaffold_1 109017438 1704 - 233722169 gcttcttgatttttctgtattttt-----------ctctttaaaaataaaaaagaaaagaaactaagaaaatcaTTTCTGTAAAACTGAACTGGTGGCATTTTAAAAGCATTGCATTGTCTTTCACCATCCCTACTGTTTGT--------ATTAAACAGCTCTGATCTAC-----CTCACATATTTCACTCTTCATCAGTTTAATGCTTTGAACATAAGCATCTGA-----AGTTACTTTGTTGAG--ACCGTGATTATGTAATtgtaatatcaaaacaaaaatct--tattttCCACAAAAATATCCAAGAATTTACCAGTTGAAACAATCAGTGATGTCACTTGAGGTACCAAGTGTTT-ATGATTAATAATTATTCAGCACATAGTAATTTGTCATCTAACCAGAATAATGTACCTTAAGGGTACACTGTCAAACCATGTGCTTAGAATTATTAA----AAGAAcaatattgtattatttgtgataattattttatatattaaaatgtagcTGTGGAGGATTAT-----GTTTGAAATCTTAAAATTCTAGCTAGGAAGGAGGAATCTAAAAAACTTTTAAGTAACTTATACTTAAAATCTTACAGTTG-AGTGAGTGCTGGTTTTGTGGTTAAGGTGTCATTGGAAACTATCATT--TTTTGACTCAAAG--TGCTTACAGAATTTGAGTATATctacataaga-acagaatatacaaTAAATAAAGACTTTTATTTAGAATGTGCACAGTACATTGGAACAAGAGTATTCAATACAAAGGAACGTGATAAATATCCCACTGGtgaataaaaacaatttcttGGAGCgcttgaaaaatcaaaagaaaat-taaaat------gttattttaaatttatacattcaCAATTTAGTTACTATAAGAATTCATAAATACCAAAAGAAATAATTGgaattttttaaagacatgaaGCTGAAT-----TATTTCACAAGATAAAATTTTCTTCAGATTA--TTACCAATATGTGATGAACCAATTtagtaacaaaatgaaaaaaacgtTATCAGTTTATGTCAACAATCAAAAAGGTGAAGGCTTTCTTAAG-AAATGTTCTTGAATTTTATTAGACTTAATGAAACAAATGGCTAAG--CAATACAGAGTTATTT-TACAGATACA-CACACGACTGAGGGTAAATCAGAATTCGGGTGGTGTGACTAAACATAAGTAGAAAATTGAGCATGATGGCAAAAGTTTTGAGGAAGACCTATGTATTTGCATGTGCAAAATTCTAAGGTATATTAGTAAGTTTAAGAAATCGAACGCTCTGAAATGTTTCCAATACTGACACTTCTTTGATAACATCCTTTCTGCATCTGTATATAGATCACAagtttttt--caaagttttataaGCAGC-CCAAAGATGTGACATGCAGGAAGCCATGTGGCATGTCAAAAATATATTGGACTATTTGTTCTCTAACATTATGGGCTGTTATTGAGAGCTTCCAGAGGTTATTGACATACTCTTTTAAACATAAAGAAGGATGGTGAATTAATGATCAGCTGACACTGATTtgtaaatttgaatttctctccCCACTCAAGTTTATTAATTGCATACACAGGGTTTGAAGAATTCTTTCTGAAgagcttcaaagaaaaaaattatagacatGTGTACTTCATTTTC-----------------AAAGTAATAGTGCAGTG---AGTTTCT---AACAAAACCTATGTCCTAAAAACATTTGGGCTGGAGTGattatgccaaaaactaaaaaataaaata

a score=6787
s chr3            99173189 125 + 160039680 AAAATAACAGCAACTTCATCTATGATTACACCCTTATAGTTGATCTGTG--CTGTTTATTTGATGTGGTCTGTCCAATAATGCTGCCTGCAACACAGCACCACTACCTATATACAGTTGTGGTTTGG
s HiC_scaffold_1 109019624 127 - 233722169 aaaataacagcaaTTTTATCTATGATTTTACTACCATAGTTGATCTGTGGTTTGTTTGGTTGATGTGGCTGACCCAGTAATGCTTCCTGCATCTTAACACTACTACCTGTGTCCAATTAGAGTTTGG

a score=84607
s chr3            99173608 5929 + 160039680 [encoded data, 7066 characters]
s HiC_scaffold_1 109020078 6377 - 233722169 [encoded data, 7066 characters]

a score=71024
s chr3            99183036 1766 + 160039680 AACCTCTCTTGAGTGATCTCAAGTATTGTCTTTTGCCATGATTAACAGTTTGGGATTTTTCAATTGCTTCAGGATGCAGTCACTAACATTAATAAAAATATAGGTTTTGGTATGCCCAGGACCTTATACAAGAAGAATCTCAGCTCTGTTGTGAGTTGGTGAACCTGTGCCACTTTTGATTGGATCCCGCACGCTCTTTTATGGACTTCATCATTGTCCAG---TGCCAGTG---TTTGTGCTAAAGTGAGCCGGTTAATTTACC---TAGAGGTGGCCTCAGTTAAGGAAATATGCCTGAAATTAAAAATGAGG----GAAGTATAAATGTTCCCCGTACTCCGTCTACTGCTGTGGAAT-------CCGTATGTCTAGTGCATGCATGCCTGTGGGCTAGTCTTGACGGTGTTTTCTTTGTGGCGAGCCTGCTGTCTACTGGGCAGCCCATGTTCCTTTCATTTTCATCCTTTTCTGACTACAGTGCTTTTGAACACAGAGCCCCCCATCCTCCCACCACCCGAACTCCACATTCCAACTCCGTGATCTCATGGTGCCAGGCATATCTCCCCTGCCACGCCGTCAGACTGCCTGCTGGCTCTTGCTGAGGAAT--GGCTACAACATAAACTTGGCTCAGAAGAGCGGGACACTCTCTGTATATTTTTAAGACCAGGGATCCAGATCCCATTTAGAGGCTGTGTTTGTTTAATAGCCCCTTGAAAACGGAACAAAACATTTCTTGCTGCTCTTACTTCGTGGTAACGTCATTCCCTGTGCAGTGATGTACAGAACCTCAGAAACCAGGGCA-TGGACGAGATGTATTAGCTCATGGCTAATCCGTTCCCACTGCTCACCAGGCCTCTTTCCCACAGTCCATCCTCTTGTGCCTTTCTCTTCGAGTCTTCTCAAGAATTTATTTTCTCCAGTTCTCCTGGGGCACAGTTTCTGAGTTTGACCATAGAGGAATTTATGCGGAACTATTCCTATCCCTTTTTTTCAGCTCAATAGTCCTGATCT------CTCTTTATATTACCATAAACAGCTGCTCTTCTTCCTG-GTCAAGTATTTCTGGATGGTATTTT---CCCTTCCATTTACTAAGTTCAGAGTTTATTTTCCTGCCTTACTTTCCCTCCTCATCAATCAGCCCTGATGCCCATTAATCATCTTTCAGTGCTCTGAAAAC-CCATTGCTTATTCCCATATTGGGGCTCC--------TTCAGGTCCCTGGGTACTGGAGGGAGCTTCTCTAAAACCTCT--TCGTTTTG--cctccctccatccacccttccacccacccacccccttctttctgtccctgttcttcccttccctctttgcccttctcccagtctctctcctttctccttcttcacctccctcAATTCTCAACTGGAAAATTTTTC---AGTACTGCTTATAAATTATGATTTG----------AAGAGTTCATTGAAAGGGTATGTGTGTGAGAAAGGGGGATGAGATTGTGAGTTGTTTGATTATATTTGCTCATAGTTACTTGAATGGCATTTTTCATATCCTCAGAGCTACAAATCTTTTGGACCCCCTGCTGACTGCTTGGATCAGATTCAATGTTGGACCGTGGAAATATGATGTAACATTCTATTTTGGCACTGTCATCTTACTAGCTGAGAAAAGCACAAACTA-TATTTGTAGAATTTGGAGTTCTTGTAGAAAGAGAAGAGAAAAACTTAAATAGCCTTGACACTCACTTATTTAAAGTAGATTAGCTCTCAGGACCTATTGTTAGGTG-AGAGATACAGATGTAGTATATTGTATAGTTTC
s HiC_scaffold_1 109034291 1738 - 233722169 AAGCTGTCTTGAGtggatcacattttttttttttgccat-attatCAGTTT-------TTCAGTTGCTTTTgaata---tcattaaaattaaaaattataaag-------tatatGCAGTGTCTTATATAGGAATAGTTTTGATTATGTTTTGAATTAATAAATCTGTTCTACCTTTGATTCAAGCAATTATCCTCTCTTCTGGATGATACCAAGTCCCAGAACTGTTAGTAGGACTAGTTCTAAAATGAACCCAAACATGCACTGATTGAAAGTGGTATTTGTTAAGGAAATAtgcctgaaataaaaaataaagacctgTTTTGTAAA-GTACACCCT-CTCTGTCCTCTTCCTTGGGATGGAACTATAGTCTTTCCTGTGAGTGAATGCCTATGGGCTAGTCTTAAAGCTGTTTTCTTTGTGGTTTGTCTCCTGCCCACTGGGAAGCCCatgcttctttcattttcattcttctccAACCCTAACGCTTTTGAACACAGAACCCCC-ATCCTCCCACCACCTAAACTCTGCATTCCAACCCTGTGATCTCATGGTACCAGGCATATCTCCCCTGCCATGCCGCCAGGCCGCCTGCTGTCTCTTGCAGGGGGAATAGACAGGAACATAAACTCACCCTAGAAGAGCAGGATGCTCTCTGTATATTTTTAAGGCTAGGAATCCAGCTCCCATTTAgagtctgtatttttttaataactGCTTCAATattgaacaaaacattttttgttgCTCCTATTTCATGATAATATCATTCCCTCTGCACTGATGTATAGAATCTCAGAAACTGGAGAAATGGAAAAGATGCATTAGGTCATGTCTAGCCCTTTCCCACTGGTCacaattcttttttcccacagtctCTCCTC------------CTTCTAGTTTTCTCAAGAATTTGTTTCCTCCATTTCTCTTGGGGAATAATTTCTTAG----------GAAGAAATTTTGTagaaatactc--atttttttttttcaacttcatATGTCTCATCTTTATAACCCTTTACGTTACCATAAGCAGTCCCTCTTCTTTCTGAGTCAAGTATTTCTGGATGGAATTTTTTTCGCTTCCATTTACTAAGTTCAGAGTTtgtttttctgctctgttttttcttttcatcagtcAACCCTAAAACCCATTAATCATTTTT-ACTGTACTGAAAATTCCTTTGCTTATTCCCATATCAGGAATCCAGAACTTGTTAGGATCCCTGGGTGCTGAAGGAAACCTCACTAATATGTGTACTCATTCTGTGCCCCCCTCATTCTCATCCCCCCCACATCCCCCTCCTTCCTTTCACCCCT-----------CCCTCT-----ATTCCTCCatcctctctctgtttccc------------ctcaATTCTCAAttggaaagtatttttaaaatagtgtttctaAATTATGATTTGTTAGTTACTTGAAGACTTAGTGAAAGTGTGTGTGCATT-----------TATGATTTTGAATGGTTAGATTATATTTGTTCTCAGGTACTTAAACGATATTTCTCATATCCTCAGAGCTGCAGATCTGTTGGGTCTCTTCTTGAGTGCTTGGATCAAGTACAATTCTAGACCATGGAACTGTGACGAAACATTCTATTTTAGAAGTGTTAGCGGACTAGGCAGGAAA---ACAAATGGCTATTTGTA-CATTTGGAGTTCCTAGGGACGGGGAAGGGGAAATTTTACATGATCTTGGCACTTACATATTTGATGTTGGTTATCTTTTGGGAACTAATGTTAGACATAAAGATAAAGCCTTAGTATGCTCTGTGGCTTC

a score=48627
s chr3            99187460 2615 + 160039680 TTTGCTTTTCTTTGTTACAGAAGGAGAGTGGAGAGCGAGTGTTTTCTGGCATTCAGCCTACAGGAATCCTCCACCTGGGAAATTACCTTGGAGCCATCGAGAGCTGGGTGAACTTACAGGAGGAATATGACACAGTGATATACAGCATCGTGGACCTCCACTCCATCACTGTCCCCCAAGACCCCACCGTCCTCCAGCAGAGCATCCTGGACATGACTGCTGTGCTTCTTGCCTGTGGCATAAACCCAGAGAAAAGTATCCTTTTCCAGCAGTCTAAGGTCAGCATCTCAGACCAGAGCCTAGAGGACTTGGGTTTTTATATCATTTAA-----------------------AGCTCCTGTTCACAATCTTTTTCTAATTGTTCAAGGATGACTTCATCTAATGTGATGTTTCCAGTTTGATATTT-----------ACATCATTAAGTATCCTTGTATTTAATATTGATTTTCAGCCTCCCCCCACTGT--------ACTTTATAGTCTCTCATCAACGCCACAGTTATGTCACAGTCATTATTTG-GACCCTGGGATTG--TTTTCTGTGCTGGATTGCATTCAGTCCGATGACCTCTCACTGTTGACTAAGCTCCCTGGGATCAGGAGTGAATTGT-GTGACCAATGATTTT-----------------------------TTTTTTTTTTTGT------------------------------------------AATTCCAAT----GGAAGTTC--ATTGAGTACTGAATTTGGAAGGCCTATTGGATAATGTCCATTGTTCATTCTTTGTATAATCA-CTTTTGAAAGGATTTGATGAAACAAGCCAGGAAAT---AAGACAAAGTCCCAGAGTTTTGTGTATAAGCCAAGAAAGTCTTCATAAAGCCAAAATAAATAAAGCCAGAGTATTTGACTCATACCTTTCCTATGGATGAGTCAGTTTACCCTTAGACAGGAAGAGATC-----CTGGCCCAGAGACA--ACAATGTAGAGCCTCACTAGCAAAGCAGATAAGAACTCCTACCTGACCACACCCTTGTTACATTTCTGCTTTAACCTGCAGCCGAGCCTCAGTCATTGGATTCCCTCTCCTGATCATACACTTCTTTCTACTCAATACATGTTTTAATATATGTATTTTTATTAACC-CAGAACGTACTGTAATGAAT----CAGAGTAACCAGCTGAAA-----------------------agcacaggagtagaatacttgcctagtatcctcaaagtcctgagttgaatcctca----gtaAGGTCAA-------GCATACACACATTAAATGAAGGATGCATTTAAAA--AATAAAGTCTTCAATGTAAGCTTGTCACTCATATGCATAT------ATGAAAT-----AATGTCATCATTAAAAGGATCATATAGGCA-------------------------------------------------TCTTCTCCACTTATGACTCTTGAAGCTTAATGTTAGACA---------AATGTGAAGTATTTAA-TAAATTGGGCAAATCTGGACTTCTCAATAATTAATGTGCATCCA-GTAACTTTTGCTATTCAAAAAGCATCGATAGATCAGCTGTATCTCTGCACACCTACTCACCAAATACTTGCACACATTTATTTTGTGCCATCTTTATCCCATAATTTTACTTGTTAAAACGTGAtttacttttatttttcatttatggatcttttgtctttctgtgcaccatgtgcaagcagtgcctgtggaggccagaagcgggcactggatagaacgggagttacagatgtactgcatgggtgctgagaacagaacctggtcctctgccagagcagacagtgctctttaccactgcatcatccccctgccccAGTCTTACTGTCTTCAGGCTGCTGGTCCCCAGTCC--TCTGGAGCTGTCAGTCATCCTATCTCAGAAGCACT-TCAGCTTCTTTCT-AAAGGATGGTGGTGCTTGTGGCTCATG-GCTGTAGGTCACTCCAGCCCTTGCCCCTGTCTCTGAGGCTGTAGAGCTGCtcatcctcaggatacttttccagtcacttaaatgcatttctcaaagcacatcggcttcactccatctaagctggttttcatactgtctcttctttgacccttatttgatgttattcctaaaacttgcattctcagccacaagtttcttttgccgtagtatttcttggaggtgactatgtctaccctccccagagtaaactcttggcctggttactttttgaagtaatctttaa--attaaaggctattttgaagctacatccaacaactgtactttcattcatttcagctcattcctccaaagataattaccatatGATAATATTTAACATCACATTAGCATATCATAAATATTTCTTTCTCTGTAACAGGCTTTTTTGACAGTGGCCTCTATAGGCACATAAAATATGCAATAGCTGA-----------------GAGAATTTCTTTAGCCTATAACATTTAAGAATAAGTAACCCACAGTGTAATAGACTGTATGTGCATTGTCCCATAAGT-AGAAATAAGAATATTGACCTTCTCTTTGCA-----------------------------GTCCCCGGGTGGCTGGTAATCTAGGTAAGGGAGCACTAGTAACGAA--------AGCGGCTGCCT------------------TAACACTGCCACACTGCT------TGGCCGTCCTTGACTTTGGCTCTG-----------TTTTGATAGTTAGTCTAGGAAACTTTGAGGAGCACAC-TTTTATGTGTATTCCGCAATGTTCCCCTCAAAACCCGTGTGAAAAGCCT-CTCGGGATCCTGGTAGCCACAAGATGTACTTAGCTTTGGCAATGCCCTTCTGCTCTACCTAAGACAACCAAA
s HiC_scaffold_1 109037059 2525 - 233722169 tttgttttccttttttccagaaAGACAGCATGGAGCGAGTGTTTTCCGGTATTCAACCTACAGGAATCCTCCACCTGGGAAATTACCTGGGAGCCATTGAGAGCTGGGTGAAGTTACAGGATGAGTATGACACAGTGCTTTACAGTATTGTTGACCTCCACTCCCTCACTGTCCCTCAAGATCCGACCGTCCTTCAGCAGAGCATCCTAGACATGACTGCTGCTCTCCTTGCCTGTGGCATAAACCCAGAGAAAAGCATCCTCTTTCAGCAATCTCAGGTTAGCTTCTCAGATTACAACtgagaacatttttgttttcacattagttaaagaaaaaatggaatgaTTCCAACAGCTCTTTTTCATGACCTTT------ACATTTGAGGATGATTTCACCAAATGTCATTATTTCACTTTAATCTCTTATCCATAACCATATCGTTAAGTATcttcatattt--tatagttttttactTTCCTTGTACTATTCTCCATAAATTTATAGTCCTTCATCTACCAAGAAGTTGTATCTCA-TCAAAATTTATAAACTTGAAACTATTTTTTCTATATTGAGTTGCACTTAATTTGATGACTTCCTGCTGTTGACTAATCTCCTT--GATCAAGAATAGGATATAGTGATCAATTGTTTTACATAATTCTGGTGTTGCTTTAttgggtatttttgttttggtttggttttctgcTCAAGAAATATTTACTACAAATGACTTTTCAAATTCAGTTTCAGAAAGCTCTAATTGTTTA-TGTGTTTGGAAGGCCTTTTGGATAATTCCCATTGTTCATTCATTGTATAATAGTTTTTTGAAAAGATTTGTTAAAATAAGCTGGGAAATTGGAAAACAAAGTCCCAGTGTCTTGTGGCCAAACCAAGAAAGGCTtca-------aatcagaacaaagcaaaaatatttgacTTATATCTTTGCTCTAGATGAATCAGTTCATTCTTGGACAGAATCAGTTCATTCTCTGGCCTAGATATAGGACAATG---------------AAACATGATACAAATTCTAACTGGATCAAGCCCACATTACGTATTTACTTTAACCTGAAGcaaaa-----------gaattgctttccttACTCATAACCATCTACc------at---tattttaatgtatg---ttttattACCCACAGAACTTAATGTAACAATTCATACAAAGCAAGTGATTAAAATCTATATTATAGGGTCaaggtgtagttcagtggtagaccATTTGCCTGGGATGCACAATGCCTGGGGTTTGATTTCCAGACTGCAAAGTgtatacatgcacatatgcacactACATGAGTTAT-TGTCAAAAATGAATGAAGTTATCAATTT--GTTTGTTGCTAGCATGTAGATATTTTGATAAAATACTAGAATATAATCATTAAAAGGCCCATAGAGGTAATTCACTccaagtatttttgttttggtttgggtttttttggtcaAGAAGTATTCGCTACacatgacttttaaaattcaatttcagaAAGCTCTAATTGCTGTCAAGTTCTTGCTTATATTGGGCAAACATCTGCCTCTCCATGATTTCTACCCAGTCATTTAATTTCTGCTCTCTAAAACTAGACAACAAATTAACT---TTTCTACACATCTGTTCTTCACATACTTGGAGACATTTGTTATATACTGTCCTTACCCTGTAAGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCTTCATGTTTGTTGTTTCCAATTCTGTCTG----TCTCAGTCACCCTACTTTAGAAGCATTCTCACTTTCTCTCTGAAAGGAATCTATCTCtgatatttcatgaaataaagtTTATTCAAACTCTTTGCATTCTCTCTGACA-TGGGAAGGTGCTCATCATCACAGTCATTTG--AATCACCT-AATGCATTTTGCAAGGCACATCATCTTTATTACATATAAGC-------------------------------------------------------AATCCCCAGTCAC-------------------------------------------CCCTTGTCAGA---------TGGC---------TTTTTAAGTAACTTGTAAATATTAACAGTTTATGTATAGTCACATTCAACAAATGTAC---------TGTAAACTTACTTCTTCAgaaatagttactatattataatA-TGAACA------------GTTATAGGTGTGTTTTCCTTTGTAATGAA--TCTTTGGTGGTGACCTC-ATAAG-ATCTAAAATTCTCAGTAATTGATGGTGTACTTCCATATGGAACACTGTTGTACAAAGCAGCAGTTGTGAAAGAGTAACTCACAGTGTAAAAGACTTTGTATAGGCCCTCTCATAAATGAGGTTTAAGAAAATTTACCTTCCATTTGAATGGTGCCAAGGAGCCTCACAAGCTCATTGATTCTAAGAAGGCTGAGGTTGTAGGTAGCAGAGCGCAGGGTGTGAATGTTGACTGGCATGTGCCTTTCTCCTCTGTGTAGGCCTGAGGCTGCCTCACAGTTACCTTCCTGCCATTCCTGAC-TTAGCTCTGTTATATGGAATTTTGAATAGTCCACCAACAAACTTGAGGGAAGTATTCACTTTGCATATATCTC---ATATGTTCCTTAAAGCCAATCTAAAAGGCTTCCTCAGTCTTTTGG--ACTACAAGTCATGCTTGATCGtgatcatttctttcctttttaatt--gacaaataaa

a score=40465
s chr3            99191861 2016 + 160039680 TCATGTTTATAGGG-----TGATGGGGTGGGA-CCTTCCGCTGCCC--TGCCTGCTATCCCTCTGTGTGCCATCTCCTCAGGAGCTGGAGGCAGAGGACCAGT----------------------GGGAAATTCACGTTA-----------GACTATGG-----CCCTTCTCTCACAGAGT-CTATCACTGTGTGGTAGCT-------------GCAGGCATCTTCCCACTAGGTATAAAGAGA------GCCTCTTGCCTCTCCCGAGGCCAAACTCTACCCCAATTTAGCTAGAAAAACTTTCAGCAGTGAG-CCTTGGAGGACAC-AGACTAGCCTTTCTGTCACACTACTAGAGTGACATGCACTTATACCAGAGTGACATCGACTCAACTTCAGTTTTATTTGTATCCCGTGCTCTGATTGA--------CCGTTACCAATAACTGTCAGAAGCACATGTTGaa--atttttt-----taattttaagaaattttaataaGACAGTTCCTAAATAGGAGACAGGTAATGTACAGATTGTTTACCTACATAATTAAGGGTCTTTTGCTGTTGTTGCTTCCTTTATCTTGGCAGTTTTGTAGTT--TGTAAGCATTTGATTGGT----AAATCTATAACAA------CataaatttattaaataattatC----AAGATTTGGGAACTGGGGCCAGTTAAGATAATTTGTGCCTGATACCCTTACATAATTACTCACAAATAGAATTAATAGCTTTTGAAATTGTG-ATTAGATGAGAATATT-TTTTCTGCCATTC--------------------------------------------------------AGTGTGTTCTCA-----------------------------------------------------GGTATAGCCACTGGGTGA---------TGACTTTCCCATGTGC----------------------CCTAGTAATCATTTTAAATGGGGAAGGAATTCAGCTATGTTATAATGCTGATTTTACCAATAATTTTCATCTGCAATCCTCTGCATTCTTTCTCAGCAGCCTGACTGGAACAGTTTAGGCATATTGAAGATTTTCCCCATTATTTTCTTTTTC--TTCTTTTCCCCCTGGCCTGCACTCACAGTTCTTCCCCTCAA-TATGCTTGCCATATGTGGGGAGTTTT-CAAACCTTCTCATCTGAAA------------GTGTACACATGAGTGTGTCTGTGCACATGAATATCTTCACACGTGCATTTTGTGCTAGAGAAGGGTGGGGTGGAGAGGATGCCTGTGTGTACATTTGGCAGAGGTTTCCATGTCAAAGCCAAAGTCACTGT-CTTTTGTTTTCAGCAGACCTGTGCACAGATCCAGGCTGAATCCCGCAGATATCTGTGAACTACAGGTTTCCACATCTCTCTCTGTCACTTTCTGCCCTTCCCCTCCCTCCCTCTCGAAGTACAATCGCTCTGCAAACAGAAGATAGAAACAGAAGATGTAGCCTTCAGGTCTGGCTGCCAGCAGAGGTCAGGACAAAGGGAAGGTTTGGAGTATCAAATATCAAGTGACTGAAGGTCCAGAATAGTCCAGAAAAAGTCAGGGGAGCAGGGTGGAATCCAAACCTTTGGAACGTAGCCTCATTCTCTGGCC----TTATATTTTGTTTCCCAGGAAACTAAAATCAATAATAATAATAAATTAAGGAGTACTATTGGGGAATCAGTTTCTGAGTGAAGGCCAAAAGTACTAACTACACGGCTCTTGCTCCAGTGTATGCACATAAAAGTTATACCTG----ACTCCTCTATGCCCTGAAAGGTAGAAAGCCAGATCCTAAAATT--ATAGAGTCCACATGGGCGCTCTGTATCCTGGTACTTTTACAAGTGCATTTGAGTATATATTTATGATTGTTGAGCTCTCCAAGTTGTTTGCTACCAGCAAGGAGTGTGTGCTTAGCTTGTAACCGAAGAG---GAACAAACATCTGTGTAGACTAATGGACTTTTGGAATGTATTTGTAAAATTGGCAATACCTCTCTAGAGTTCCTGGGGGAACTTTGCATGGCCTATGCAGTAAACCATAAGTTAGAGAAATGATCATATAGCCAGACTCTGCATGTGTTTGCTTCTCTACATAGTTCCCACCTGTACCACAGCTACCACTTCCTGGCCTACATC-TGGCTCCTGTCCTACTTGATGA------------------------------GAAGGAACAGAACCGTAGCTTGACGGGTTGTACCTTCAGGAAGAGGTCTT
s HiC_scaffold_1 109040766 2083 - 233722169 TCACTTTTATAAGAAATACTTATGGGGTGGGAACCTTATTCTGCCCCATGCCTGCCAACCTGCCCAGTGCCTTTGCCTCAGGAGGTCCTGGCAGAGGGACAGTAGTGATCTCCAGCCAACTGCAAGGGGATCTTGCATTATTTCTTGCTTGGACAACTGAATTTCCCTTTACTCCTGTCTTACTGTTACAGAGTGGCAGTTCAGTCCCTAGGTGACAGTGATCTTTCTACCAGAAATGCATGCATACTTTGCTCCTGCCCTCACATAAA---AAATGTAATCTCAGTTTATCTAGAAAGGCCTTCAGCAGTGAAATCTCAAAGAGCATTAGACTACCATTTCTTCCAC---------------------TAAATCATGAAGCTATT--TTTATCATCAGTTTATTTTGTATTCA----TATGATTGAATTCAACTTCTTTATCAGTAATTGTT-----TAAATGTTGAAgaattttttctgatttattttgaggaaatttGATAAATTA------------------------------ATCACTTATCCACATTTTATAAAGTGTTTT-----TGTTAGTTACCTTATATTGAGGATTTTGTTGTACATTTAAACCTTTAATTGATCATCAAATATGTCACAAAGAGGATaggaatttgaaaaattatttttcttgaaattttgaaaGTAAATGCCAGTTAAATTAATTAG-ACCTGTACCCCCCACAGAATTATTTGTAAGTAAAATGAAGATTATTTGAAATTGtgtgttaaagaaaaatattgttttatactATTACTCTGGTTCTACAAGTTGGAtgttttttagattccacatatgatCTCACTCTTCTAACTGTGTTctcattatttttacatttattactcttttgtatttctaaaattacATGAATTTTTACAGTGTATTTACTGCGAGAGTATAAAGACAATGTTCCCATATGCTGTTCTTGTGGATCAGAAGATGCCTGGTAATGACATGGAGTAGGGAAGGAATTCAGCTGTGGTATAATGCTGATTTTACCAGTAATGTGCATCTCCTAGCCTCTGTGTTCATTCTTAGCATTCTGACTGGAACAGTTTAAATGTATTGaagatttttctcattattttttttttctttttttttcccactggCTTATAGTCATAGTGCTTCCCCTAAAGTATGTTTGCCATATGTGGGAAATTTTACAGAC--tctgttctaaaagtttgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgcat----------------------------------ctgtgtgtgtgtttggcagTGGTCTCTGTTTAAATGCCAAAGTCAATGGACTTTAATGTCCAGCAGGCCCGACTGCAGAT---ATCTGAGTGCCACAGATATCTCTGAGGTACAGATCTTTGAATCCTTCATTGTTACTTT--------------------TCTTACAATCTAATCACCTTACAGATGGAAGATAAAA-----------AGCTTTAGGCACTGATTTTTTGCTAAGGCCAGA--AAAATGACAGTTTAGACCATTAGCCCTCATGTTACAGAAAGTCCAAATCAGTCCA-----------GGGAGGAGAATGGGAACTGCAGTTTTGGAATGTGGCTTTGTTCTCTAGTTAGAGTTATGTTTTGTttcccaggaaactaaaatcaataataatgataaataagAGGGGAGGATAGAGGAATCAGTTTCTGAATGGAGGCCAAGGGAAGTGACTACATGAATCTTGGCTCTCTATACACAAACAGGAGTTATACCTACTCTATTGTTCCTTGTCTTAGAATGTTAAATG--AAGGTCTAAGGTTGGACAGAGTCTCCGTTGACTTTATTTATCCTGGTAATTAAAAAATCGTATTTGAATACATGTAC---TTTGTTGGGTTCTCAAAATTGTTAGATATCAAAAAGAGGTCCACATTTAGCGCAtaatagaaaaaagcaaagaaatgccTGCAGACAGTGATGGACTTGGGAGATG-----------------------------------------------------------------ATGAGAAGTTAGAAAAATGATTATGTAACCAAA-TCTTCAAGTA---GTTTCTCTCTGCAGTTTCCACTCATACCCTAGC-ACCACTTGTT-GCCTAGATTATTACCCCTGGGTGACCTGATGAACAGTGATGGTGTTTTTGTTGCCTCTATCCAGAGGAACAG-GTCATAGCTTGA----TTatatcttcaaaaaaaattctt

a score=52274
s chr3            99202229 2458 + 160039680 aaggCAAAGCTTTAAGCCATACTGCCATCCTAT------GTCCGGCTTTGCATCTTGCCTGGTAGCCTTACCATTCGCCTACTA-CAATTCAGCATCTGCTGCAATCACTCCCATAGAATTGCTTTTGTATGCATCAACAGGTTG-----TAAATCTGTT--CCTTTTGCAGCTTCCAGTGAAGTTC-ATAG---TAGCTCGTTCA-------TACACTGAACA-----AAAAAGCCAGCCTGGGTTTTACAGGGATAAGTAAGGCAGGCAAACTGCGGTG--ACTGAAGG-----CTTGT---------------------------GTCTTGTTCTGTTAATGGCTGCCTTCTTGTTTGTGGAAGGTTACCAAGCCAG-TTGCTGTCCTGTACCTTTGTGTGTCTATAGCTAAAACAGATCATATAGTTGATTTGTTTGTGGCTTCACAATATAGGAAAATGATACATTTAAATATTTATCACTTTTTCTTTTGCTTCAAATAGAAATCTGTGCTTTTCCATGTGATCATCTTGACTAT---GACAATTATTT---------CTATTATTTCTCATATAATTTATTGAAGATGAATGGCAAACAGTTAATTGGCTTTGGTCTTTTACCTACTTTCTCTAC-TAGAATTGATTTGAATTAATTTAATG----CTAATTTGGAACATTAAAAAAAAAAAACCTCTGTTGAATATTGAATAATTCTCATCCCATAGGTACAAACAAAAAACTACTTACTCCAAGCAAAATACTTTCATTCATGGGGACATAGTTGTAAGGTTTTTATCAGATCACTAAGACAAAGTGTTGGACCCAGCACTGAGGGGAAAGA--TGTCTTCCCTCTGTCCACACATCCAGGGTC--TCTCTTGCTGCATTTCCATTCCTAAAGCTGGTGGGCTGGGCGTCAG---CTGCATACAC---------------------------------ATTTTCCCTGGGCAC--ATTTTCCCTGGTGCCTGGGAGCAACTCTAATCCCCTCCCCTACCTTCTGGGTTACTGCATTGG----ATAGCTGTTTGTTTACACCAGCAGCCAGCAATGTTCCTGGACAGGGCTGTCATTACCACTGCCTCCACTAAAACCCAAAGGCCTCTTAGAAGAAAAATGACAGATTCTATCCAGCGACTTGCAAAACTCTAAAAGCAATTCCTTGTCAAGCACGTGAAAAACAACTCTTCTTCCTATATGAGTTGAGAAGA--AAAAAAGAGAAACTATCTTACTCCAGATGTTGGAGTGCTTGTGAATCCTTGCTAGTGAATCAGGCCTGGGCTGGTTCATCCCCAGGCCTTTATGTTCCCTTTGCAAAACCCACAGAGAACACATTTGGGGCCACTTTGCAGAGTTGGCAAGAGCCTCTGCTTTTTAAGGGAATCATATGGACAC-AGAATGCCACAATCAATAGA---CTCAGAATCCCCAGGGCCCAGAAATGGGATGCTTAGGGCTCACAATCTGGGTCATCAGTTAGAATATGGCCTGGGCCCAAGAATCAGCCCAGTCCTTGCCAGGTTTTGCTTACTTGATTAAACTTGATTCAAACAAAACTAGGTTGAAGAGAGTTTGTATTTTTTTGTTATTGTTGTTGATTAATTGGCAGGGGCAGAAAAACAAGAGGAAAACAATGAAGGTGGAAACGGAGTCAAT--AGAAGAGGAGTTAGAATCTTTAAGACTCTCCGTTGGTGGACAAGTGTACAGGCGA-------------TCGCTTTCTCATCGCTGAAGATCTGAAAAGGCCAGGCCTTGAGCTGGGTGCCTTTCTTTACCATCTAAGTGAAAAGCATTGTGGTTACAGTCATGGATTTAAGAG----TCAGAGAGGACTTCGAATGTATGTGGGGAGGGGATAGGGTGGAAGTGAGGACAGGAGGGGAAACTTGATAGA-TTTATTGATAAGCCTAGTATTTCATGGGGAAGGAGGaactgggcagtggtagcgcacacctttaattccagcactcaggag--gcagaggcaggtagatctctgagttcaaggccagcctggtctacaaagctagttccaggaaaaccaggactgcacagagaaaccctgtcttggaaaacaaaaGCCAAACAAAATCAAGAGCATGGATGCTCAAGGACATGGTTGAATTCACACTGAAGATACTGAAAGAGTTCTGGCTACCTCCTCACTAGGGATGCCAAGGACTTAAACAATAAGCTGCTATTTATACTAGTTGGCTTTTTTTTAAATCACTGCTTAGTTATCCTTATCTGTATATCAGGTATCATGGCCCAGCCCCTCACCTGTTTCCTTTTAATAA-CCTTGACTTAGGTTATTTTCAACTGTTTCAGCCTATCCCTGTTGTCTAGTTAGTACTGCTTAGATGCAAAAAGACACTGGTCACCTTTCT----TTCTCTCCTTCCTTT-TAGGTGTCTGAACACACTCAGTTAAGTTGGATCCTCACCTGCATGGTGAGACTGCCTCGATTGCAGCATTTACACCAGTGGAAGGTAAATGCCAGAACCTGAGTGTTAATGGGAAGGAAG-----------GTTTCATTTGTT-CTGTGCCAGGTGCTAGGCATCCT
s HiC_scaffold_1 109051438 2335 - 233722169 AAGACGGAACTCTTAACCACTCTGCTGTGTTCTTTGCTCATCTGTCTTTGtattgcatcttctagtcttgtTCTTAATCTGATGGTAATTTAGATTCCATCTCAGTTACTCATTTGAAATTGCTTTTGCCTGGATCAAGAGGTCAGGAGCCAAATCTAATggcctttttc---tttctgtgagcTTTGATAGAGTTAatgtattcaacaaatatttactgaacacaTTCAATGTGCCAGGCTCTGTT--ACAGGAATAACTGAGACTGGCAAAATGTAGTATAACTGAAGAATGCACTTGTTACAGCCAAGAGGGTCAGAAACCTTCAGTTCTTTTCTGCTAATCACTGCTGACTTGTTTGTGGATGATTAGTGATCCAGGTTGCTGTCCActccttttgttcttctgtggaTGAAACAGATCTTATG-----TTTGTTTGTGACTTCATAACATAAGGAAATACTATATTTATATACCTATGACTTTTGCTTTTGCCT--------------------------------TCTTGAATATAAAGATAACCAGTTTTTGAAATGCTACT-TTTCTTAAATAATC-ATGAATGAtgaattatgaaaaattatttgccTTTAAACTTTTACCTATTTTTCCTGTATGAAAATAACTTGAACTAATTGGATGTTCTCTATTTTGGAA----ACAGCAGGAACATCTCTGCAGAATATTAAGTAAGTTTCATACCATATGGCCAAATAAAAGGCCACT----CCCAGTAAAATACTT--GTTAGCAGAAACATAGTAATA-GCTCTTTGTC-TATCACCAAAGCTAAGCATTTGAACCAGAGATGTAAGGAAGGAACCATCTTGTCTCT-TCCACATATCCatggttattttctgttttcattccttcCCCCCAACTCtgtaaaagaggggaaaaaatctTTACATACTTCTTCATGCCAAAACGTAGTGTTTGTTGGATTACTTCCTATGGGAATGTATTTTTCTCAGTGATTGAAACTAACTCTAATCCTCTTGCTTACATCCTGGGTTACTGTTTTTGTCTGATAGTTGTTTGTTTACAGCAGCAGTTAGCAATTTACTTGGACACTGCTGTCAGAGTTACTGCCCTCAGTGAAGCTCAAATGCCTCTTGGAAGAAAGATGACAGATTCAGCCTAGCAACTTGCTAAACTTTAAAAGTGATTCCTTGTCAAACATGTGAAAAACAACTCTTCCCGCCTTATAACTTCAGgggaataaaaacaagaaactatCTTACACCAGATGG----------------------CAGTGTAATAGGCCAGTGCTGATTCAGTTTCA----------TTCCTTTTGCAAAATCCACAAAGAAAACATTTGGGGCCACTTTGCAGACTTGGCAACAGTCTCTG-GTTTTAAGGAAATCATATGGACACAAAAAAGCCACAGTTAATGAAGAGCTAGGAGTCCCCAAGACCCAGAAATGGGATGCATAGAACTGAAATTGTAGGTCATCAGTCAGACCATGGCTTAGACCCAAGAATCACCCAAGTTGTTGCCAGGCTTGG-TTATTTGACTAAAGTtgatttaaacaaaaatgaattgggaaaagtttatatttt----ctattaGAGCTCTTCtattgaaaa----aaagtaaaaagaggaaatgaagaaagaagaaaaagaggatgaggaagagaaagaactagaaattataaaaatacccTTTGG------AGTGATGGGATGATAAAATTCATTCCTAATTTTCAAATCTCTCTAGAGCTAAAAACTTCAATTGTTAAGGTGAGTGATATCC--CACCATTTATATGTAAGacattgttactatttttatatgtttaaaagcTGATTAAAAAGaatctgctctgtgtgtgtgca--------cgcgcatgtgcacacacgcgtgcacacacccCACATTTTCTTAGCAAGCTTGACTTTTT------AAAGATGCATTGAAT-GCCTTAGGACACA-ATCAAACCCCCTCAGTAAGGTGTTGTAATAGCAGA-------CTTTGGTCAGTCCTTTCCTGGTATA----------------------------------------------TTGTAAAGAGAATTTAACACAAAATTGGGAG------------GGGATATCAGTCATCTTTTAC---------------AGTT---------TCTTTACCTAAAATTCTA------------------------------------------TCATGAAGCACTGCTAAATCTCCTTTACCTGT----------------------CCCTTA--------ATTTAAATAACCCTTGACCTGGAATAGTCTCAGACACTTAAG-ATGTACATATTA-CTCTTTAGTTTGGCTTATATGCAAGAAAATATTGGTCTTTTTGTTAACATTCTATCTTACTTCTGTAGGTTTCTGAACACA--CAATTAAGTTGGATCCTTACCTGCATGGTCAGACTGCCTCGATTACAACATTTACACCAGTGGAAGGTAAGTGATTAA---------TCAACAGAAAGGAAGCcattttctactttccttttattattctgttaGGTTCTGGGAATCCT

a score=15384
s chr3            99204817 981 + 160039680 GAAACCCAATTTTCTAATAATTTCTGGACTTAACT----AATGTGGAAT----------------CTAGAAAACTGCTTTGTCCTTGATGAAATGAATGAGAAATTGAGGCGGTATAAGATCTGTGC-TGGGGCAGGGGACCATGTGTGG-----AGCGGTAGAGCTTGGGTGGGCTTTGCACAAAGGAGGCCCCATCTCC--CAAAATAAAATAAA-------------------ATGCCACGGGAATGGTAAAACAGAGCCCTCTCACTTCTGAAGCCAGGAGCGTGAGCATGATAAGCAGCCAGATGATGTTAGAGCTGCTGAAAGGGACCGAAAT-ATATGTTATTACAGGTGGCTCCGCTGCACACTTTGCTTGCTTTAAAAGTTTCTTAATTAAGCAATATAATCAGGTTGAAGTCAGATGGCTTTTTCTTCTCTCCTCGTTTCC-ACAGGCAAAGGCTGCGAAGCAGAAGCATGATGGGACCGTAGGCCTGCTCACATACCCTGTACTCCAGGCAGCAGACATCCTGTGCTACAAGTAAGGAGGGGCACAGCCCGGAGCGCCTGCACTCTCAGCATGACAAGAGAGAGGCCAAGTGTGAATGTCTGTTTGTTTGCTCATGGCAGGGTCTCCCTGtgaacttggaatcctcaggctcctgagtgctggaatcacaggcatgtgccacATGAGAGTGTTTTTAACTCTCAGGAAAAGGTTTGACGTGTGGAGGTGGGGTACAAGAAGGATCAGAT-----ACACAGTC--CGCACCGCATACTGA-------------GTGTGTGTGTCTTTCAGTGACTCACGAGGGCCATTCAGAGCTAGTGC-AGAGTGCC---TTCTATGTGGTAGAGACCTTAGTAAGTCTTCTCTGTGTGCTAA-CCAGAAAACAGCCTTGTAAAA--TATGTCATTGTTACCTCTATTCCACAGAAGGTATAGCTGGGTCTTAGGTGTCGGGTGGGGTGGTCATCAGCAAATCCCAGGTCATGCTAGCTAGTTAGGTTTGGAGTCAGGGTCTGAGTCCAGAAAgt
s HiC_scaffold_1 109055381 936 - 233722169 GAAGgtcattttcataataatttctGACCTTATCTGTGAAATATGGACTTTGTCTGACTTAGAAACTAAAAAGTTGCTttgtctttaataaaataaatacgaAACAGTGACAGTTCAAGATCTTTTCAGGGGGCAAGTGACCAGAGATATCTTTCAGTGATAGAATGTGTGTG----TTGCATGAGCAAGGCCCTGGGCCCAGCataactaaatgaataaatggatagATGCATAAATGAATGAAGAGGGGTGAAATAGTCACCTTATCCTTACGTAACATGAAG-GCAAGCCTA--------CCAGAAAAC-----AGTTGCTAAAAGGAACTGAGGTTATATGTTATTACAGGTGGCTTCAGATCACACTTGACTTACTTTACA-GCTTCTTAATTGAACAATATAATTAGGTCCAACTCAGAT-----TTCTTCCCCTCTTCATTCCCCACAGGTGAAGACTGCCCAACAGAAACATCATGGAATGATGGGTCTGCTCACATACCCAGTACTCCAGGCTGCTGACATTCTATCCTACAAGTAAGAAGAAAGACCACCTCTGGT-CTCACGCACTTGGGATAACAAGAG--------------------TGTT--TTAACTCATAAAA-----------CAAACGGTTGATCCATAGG---------GCAGGGAACA----------------GACAGTGGTC-------------------------TATGG-GGCAAGGGACAGATAGGATCAGACCTGTGAATCAGTTTGTGTATTCCTTAGTGATAGGAACTAAATCATGCATATAtgttttaatgagaaaatagTAACATTAAGAGCTAACACTTAAGTATCACATgttatgtatttgaaaatgttGTTAAAGCTTCATATACATTAATCCAGACAACAGCCTTGTAAAATTTACACTATTAGTATCCCAGTTCTacaaacaaggaaactgaggcaca-----------aaataGTTAATACTGGGCCCAGAGTCATG-TAGCTTGCAAAAGTTAGAGCCAGGCTTTGAGTCCCAGAAAT

a score=16262
s chr3            99208090 556 + 160039680 CTCCTTCCTTAGCCTAGGAATTATC---TGCCATATCTAAAGCCATGATTAGATTACAGATGTG-----GACGTCTGTATGTCCTTTCTCTAAAAGAAGCAGCCCAGCA-TTCCCCCCTGTCTAGGCTCAGGCTAGACCACCTGTGCAGTTGGGGGTTTTCTATTTGTTTTTGTTTTGTTTCACGTATTTTTGTATCTGGAAAAG-TCATGACCAAAATGTCTAGGACTATTTATATTATAAACACAGGTAGTAGGTAAGTTGGTAGATTGAAGGATGGGGAAAACATCTTTGG-TTTCTAGCCACCTGAAAATCTATATGGCCTCTTCATAGAATACTGGTGCAAGTTTGATATTGGTTTTGTATTTGCTTCTGTCAAAATCAGCATTAGAGTGAGTGCTATGATAAGCCAGAGAACACAC---TAGGAAGTGAACAGAGAAGCAGC--TTCAGATAGGCTTATAAAAGA--CATGTAATTGTTTCCATAGGCTTTGTTTAAGGAACCCAGGCAAGGAGAGCTGAGATTATCTTATCTGGAGAGCATGATAAATAACAGAAATTTGagccaag
s HiC_scaffold_1 109062702 541 - 233722169 CTGCTATCTTAACCTAGAAATTATCCCCTGCTGTATGTAATTCCACAATTA-AGCATAGACATGAGGTAGACTTCTGAATGT----TCTGTAAGGGAAACAGTCTGATAGTTCCCTCCTGTCTGGTCTGGGGCTGGACCACTTATGCACTTATggat---------gttttttatttgtttcagatATTTCCAGATTTTCAAAAGGTTATAGCTAGAATATCTAtgaatatttacattatatatgtAGATAGGTGATAGGCTGACAAAT-GAAATGTGAATGAAAtacttataaatttttttctgctaGTAAATCTGTGTGGCCTTTTCATAAAACA-----GCAAATCAAGTACAGATTTAGTATTTGCTTTCGTTAAAATCAGCATTAGAATGAGTGGCATGGTTGGCCAGACAACAAACACAAAGGGAAGGAGTAGAAATGGAGCCTTCTAGATAGACTTACAAAGGGTTTATGTAACTGTTTTGGTAAAATGTG-ATAATTAACTCAG-------GAACAGAAACCATCTTTTCCTAAAAGC-----AAATAACAGATATTTGAAGAAAG

a score=56971
s chr3            99210246 2001 + 160039680 AGAGATgaaaaggtttgtttcaatatagatttcagg-gtttcagcacatgattggttgaccccattgcttcagcctagagtgacgcaggatgtcatagcagaa-acacatggtgggaaaagctgctttattcat----ggtgagaaaaagagatatagggaggaggcaggccagggtctccagattcccttccagggccacaccccagtgacctaatctgtttctaacaggcccagctcctgagtggttccatggctcccagcaactccatagactgggaccaagcctt-agcacatggtctctgggaaaaatttaaagtgcaaa--gtaAAAAGGA---------AGAGGAGTAGTGTAGACAGTAGACGGAGTGGCCTGGAACTTCAATTTGGTGGTTTCAGCTTCCAGGAGAGTCTTCCTGTTGTCTGGGGGTGGAGGCGCTGCCACAGGAAGTATGCTGTTTTAGAGCAGGT--------TTTAAAACCCTCA-----------------TCCAGT----GAGCCC-------------AGAGTACTAGAATCTTACAGGATCCTGAAAGCTGCCGCCCCAGCTTCATT---------------CTACC-------------ACTCGGCCTGCGCAGCCATGCCTTTTCTTTCT---------------------------------------------------------------------------CTCTGAAGATC-----------TATAAGGCACAGTGCTATA--------------------------------------AGCAGGAAGCTATT-GTGTATTTTAAGGACAGAGTGAGGTTGCTGTCATCTA---------AATGAGCACTGATTAAA-TGCAGAGGAAGTGTAA----AGGAGAGCGGTAGCTGGG--GCCTACTGTTTGGAGGCAGTTTCAT---GACCT--------------AGAGCATGA------------CGTGAAGGG-TATGAGGTGATCACACGCACA--------------------------------------TTCA--------------------------------TTATAGTGTTGCCCTGCAATGAGGTGGGCAGCCCTAGGAGAGGAATAGTCA---GAAGCCACAGTTTCACTCCAT-------TTTTAATGAGTATCCGTATCTATTAAGC------------------------------------------------AATTACTGGAAGGGAGAGTCCT--------GTCCAGTAAGCAGTCAGTAAAGGGGAACCAGTCCTTTGTGACAGGAAGGACAACTCCAAGCCCCTTTC---------------CCAGCCTGCCGTTCTGAAAGCTCACAGGCACAGCCAGGCAAGT--CAGGGA-------------AGGCGATATC--CACGCAGACA----------GTGATCATTCATCTGGACACTAACGCTGCCAAATCGGTGGGATGGAGCCCAAGGAAACTTCAGGCAGCAGGGATCGAAGCGAGAGAAAAACCG-CTCAGTCACCAAAGAAGAAGATCAGAGACATTATTATGTGACAGAAGTTATAACAATCAAAACTATGAAAGGCTTT-GTTTTATGTTGTGTCTGAGAAAGCGCAGCCGGGGTGAGAGGGAATAAAAGGGAAGGAGGGAGAGAGTGGGAGTATTAATATGGATATCATTATGTCGGATATAAATTCTGAAAGGGCAGCCCTAAATTATTTGAAGTGAAAGGCGGACTATGGGGAGAGAGGTTGGAAACGTGAAGAGAATAAGCCCCAGAAGTGAGTGGAATCAAAGACAGGCTGAATAAA-GTAAAGTGTGAACTCTGCTAGCAAGAGCTCGGATGGGAAGCAAAGGCCAGGATAAATTACAGGAGGTGAAAG---CAGCAGGAGGAGGGG---------CCAGAAACAAACAAACCAAAGGCAGATGCAGGCACCACGTGGAGCAGTGGGGCCAGGTGAAAAAAATTAAAAAGGTTTTAATCCTCTTATAAAAAAATCAAAACCCCACAGATTTGTTAGAAGAGAGTCAAGGATCCGACAAGAAGCGAGTCGCACACAGCGTCATTATGAAAACTAAATGTGTTTTTTGTTTAGTG-GGTGGCTTTGGGAATCTGGAACCATTTTGACATGTGGAAATATTCATTTTGATGTGCTTAAAGTGTATTGATTATGGTAATTGTTTTTTCTGTGTTAGTTGCCGTCCATTGTGATTTCCGATGGGCTACTGTAATTGCTTTTTAACCTGCTCTGTTGGCTAATTTGGTCTGGGGGAGTCAAGGTGACCTCTGCATATGGGTCTCACTATAATTACCACGTAAGAGTAGCAAAGACCAGTCAAA-GAGACATTGACAAGAGCGGGCCATGTGCTTGTGTACCCCAGAGAGGAGC
s HiC_scaffold_1 109063842 2396 - 233722169 agagagaaaaaggttTACTTTTGCTCATTGTTCAGAAGATTCATCACATAGTCC-TTGGCCTTGTAACTGTGGGCTGTGATGAGGAATTACATAATAACAGATTACACAGAG-GAGCAAAGCTGTTCATCTCATTTCAGCCAGGAAGTAAGAATATGTCAGGG------GCCAGGTCCTTTTG-TCCCCTTCAAGAGCAGACCCCTAGTGACCTGACCTCCGCCCTGCTAGGTCA-TTGCTAAAAGGCTCTACTCCCCTCAATAGCATCACCAGCTGACACCATGTCTTCAACACAGGGCCTTTAgaggacatttaagatccaaaccgtAACACAAACCAAACCCTAAACAAAGAGTATAGAGAGTAAAATGACTGGTCCCAAACTCCTAACTGGTAGAGTACAAGTAGAGATGGGTCATTGTGATGTCTGTGGATCAGACTACCGATTCTAAAAATAAGCTTTGTAAGAGCTGATACTAGGTATTTAAAGTTCCTAACACTGGTTTGAGGAATTCCAGTTCTTGAACTACATCTATTCTTTGAGGGACCTGAACTTTTATGAGATCATGAAAGCTACTGCCTAAACTCTGTTTGTCTGGTCTGACAACTACCCACATATTTGCTCACACTGCCtcagaaatcat--tttttctttctttctattggGCAAGTACCACACTAAATTAAACTTCTACTGAAATGCCATCTGGGATAAGTAGTTCTCAGACTAGCCCCTGAAAACCAGAAGACAGCATAGAAAGGAGAGAATTGTGGCAAGATGTTGAACAATCCAGGTCACTCACCAAAAAGGAGTGTAAAGCTATTCATACAGTTTAAGGAGAAAGTGAATTTGATATGACTTATACTTTTCAAAAGCTAATTGATTAAAATGTAGAGAATGAGTTATAGGAAGAGAAGAATAGCTGAACAGTCTACT---CAGAAGCTTTTTCACACGGACCATGTTATGGCAATGAAGAGGATGAGAAACAGCCAAATGTAAGGGACTCTGAGGAGGTCACACTGACAGGACTCCATCCTGACCTCAATGTGTACGAGGGTGGGGCTTCAGCAGTGAGAGCACTTTTCTCATGCAACTGAATTGATGGTGTTGTCATGCACTGAGATGGGGGACCCCAAAAGAGGAATAGTTAAAGGAATTTGTGGCTCTATTCAGTATCTTCCCTTGAAGAAGTTTAAAAACTTTGTAATCTCTCTCATAACACCCACCCCAAGCCTTTCACGttgtgtgttttctctagattaCT--AAATTAGATTCATTATAGCAAATCCAGTGAGCCAGCAGTGAGGAAGAATCAATGCTTTATGACAGGAAAGACA--CACTAGCCCCTGTCTTACCTATGCAGGGTCCAGGAGGCAGTGCTGAGAACTCACA----TAGCCTAGCAATTGACAGGGGCCACGGGGGAGAGAGTCAATCTCTGCAAGCAAATATTTGTCCGCCGTGATTATTTACCTGGACACTAATTCTGCCAGAGAGGTGGGGTACATCCCAAGTAAACTAGATGCAATAAGaaactaaatgaaagaaaaaatgatttagtCACCAAAGAAAAAGATCAGACGCATTATTATGTGACAGAGGTTGTAACAATCAAAATTATGAAAGACTTTTGCTTTATGATGTGCCTCA--AAGCAGAGTCAgggtaagagaaaa----------------aaagaatagacatATTAATATGGATAGCATTATGTTGCGTGTAAGTTTTTAAAGAACAGCACTAAATTATCTGAAGTGAAAGGAAGACT--GAGGGGAGAGGTTGAAAACGTGAAGAGAATAAGCCCCGTAAGTGAGTAAAATCAAAGACAGACTGAATTAATACAGAGTGTAAACTCAGT------------GGATGAGAAGTAAACGCCAAAATAAATTGCAGGAGGTGAAAGGAGCAGCAGGAGCAGAGGGAGGAAATACcagaaacaaacaa-tgaaagtcaGATGCAAAAGCCACGTGAAGCAATAAGACCAGttgaaacactttaaaaatgttt-aatcctttttttcaaaaatcaaaaccccacagaactgtaagaaaa-agacaaggatcCCACATAAGGCAAGATACACTTAGCGTCATTACGAAAACTAAATGtgttttctgtttagtttggttgctTTGTGAATCTGGAACCATTTTGACATGTGGAAATATTCATTTTGATGTGCTTAAAGTgtattgattatggtaattgttTTTTCTGTGTTAGTTGCAGTCCATGGTGATTTCCTACGGGCTACTGTAATTGCTTTTTAACCTGCTCTGATGGCTAATTTGGTTTGGGGCAGTCAAAATGATCTCTGCATGTCAG-CTCACTATAATTACCAGACAGCAATAGCAAGATCCAGCCAAAGGAGAAACTTACAAAAGTAGCACTCATTCATGTATACCTCAGAGAGGTGC

a score=56201
s chr3            99214050 2861 + 160039680 CTTTCTTCGCTCTACAGTGTCTTTAAGAAGCAACTACAGTGCACTGGGAGATTTT---CATTTGAGTTCCCCACAGCATGTTAACTGTCCTCCAATTACAAATAGTTGAAAATGAAGAAGCATATTGCAGAAAGATCTTGAAATGTGCCTCGTTTGATGGGGAGGAAAACCTCTGGCCGGAAGAGCTG-----TCTGCCATCTCTAATTTGAAGAATGGG-TGGGGTGTCTTTCAAGTGTGAGGGCGCAGCTCTGAGGTAAAG-GCATCTGGTCTAGGCTGGAGTAATCTGC--TGACTGGGTGAGGGATGAGGAGTGGCTTTTAGACACAATTATGCACAGAGCATGTGCTATTGAAGATGCCGTGGCTCCCTCCCGGCAAGATCCTGTCATGCTGGTGTTGATGGCTCTACTCTTTAGAGATGGGAGAAACGGAACCAGAGTCGACAAAC-----------ATGCCTTCAGCACACAGATAAAGA-TTGGGCCTCAGTGTTCTCTCTGTAGTTGGCAAACATTTGTTGAACACCAACAGTGAAGTAGGCACAGGAAATGCAGCTGCTTGCAATAATATTTCCAGCTAAGG---AGCCTCGCTGAGTTTTTCTGTCTGTGTTTTATTAAAGGTCCACACACGTTCCTGTCGGGGAGGATCAAGTCCAGCACATGGAACTAGTTCAGGATCTAGCTCGAAGTTTCAACCAAAAGTATGGGGAGTTCTTTCCATTGCCCAAGTCCATTCTCAGTAAGTGG---------------GTTTATACT------GAAGCCTAGACGG------GAGACCTGGGACTTGACTGGCACTAAGTGTGGCTTTCTCACTGACAGGCTCCAGCATCCAAAAC-AGAATCTTTATTGTCCGGGGGTCACGTGGGACTAGGAGTCTAGAATACatt---ttttttaatttattttttaaatGTGAggactggagagttggctcagcaggagcactggctgttcttccagaggtcctgacttcaatccctagcaaccacatggtggctcacaaccatctataatgtgacctgatgtgctcttctcgaatgtaggtgtacatgcagataaagcactcatatacata---aaataaatctttgaaaTTTGTGAAAATTTGAGAAACTTTTAAAAATCATAATTTTgctgggtgtggtggcgcacgcctttgatcccagcacttgg-----gaggcagaggca-ggcggattt--ctgagttcaaggccagcctg-gtctac--------agagtaagttccaggacaactagggctacacagag---------aaaccctgtctcgaaaaaaaaaaaAAAACAACCCTCCCCCCAAAAAGAAAAATCATAATTTTGATTTCTAAGATATATGTCAATAGATTGCATGTATAAAATAACATTTTATTTGAGCAAATTAAACATAGTTTTACACACGAACTA---------AGGCTCAGCAAGGTCATGTGTCTAGT-------CGGTAACCCAGCTG--AGCCCTGGCAGCTTCTGATACCA--AAGCCGATGCACCTTGCTCTTCTCAACATCCTCAGTGAGACAAA---CGACAGGAGA--ACGAGAGCTGCTCAGCATAGTCCACAC-----AGAATGAGAGCACT--------GGTGAACCTCTCACTGCTGTCTGAAAGACAGGAGAGACGGGCGCA---------------------------GTCCACCCACTGCATCTGAAACGCCAGC-CTCAGCTCTG--CTGAGAGCATCCCATGCATTGAGGTCAGCCTCCTTCATAGCAATAAGTAAAATGTCGGTCAGTGTTCC-ATCTATGACTGTTTAGCCTACTTCAGTTTCGT------CTCTAATGGCCATAAACTAAGCAGGTATCAAGAACACTG----TTTATGAAGCA-------ACACCCCCAT------------------GTGGGgtgtgtgtgtgtgtgtgtgtttctgtcactgtgtgtatatgtgtgcaggtgtgtctgtAAATTTATAAG---CTGTGTAAAGACGTGGAAGGATGGCCACAGATGGTTAAAGCTGCAGCACTGCTACAGCAAGGGAGGAGGTGGACACGGGAGCATGGCCAGCCGCACAGTGGCAGGAAGAACAAGAGATCCCCTACCTCAAAACCAGTTCCCTAAAGCTGTTCTCTAGCCACAAACTTGCCATGACACAAGCATATATTTACACACACAAAAATTAAAAATCAAGTGTGCACAGAGCCAGAGAGATGGCAGAGAATAAAGGCACTTGCTTTGCAAGGCTTGTGACCTGAGCTGCAACTTTGTACCCCTCAAGTGTGCATAGCATAGGCAGTATAACCGACATCGTTTCTTTTGTGTCAG-TCATACACTGGATGAATCATTGCCAATACATGCTATGGATGGCACATTAGCAAGTCC--TGTTTCTGATGTCTTTACTTCCATGTT---TGATAAATTGCACAAATTCTTCCAGATGAAGACATGCTATT-GTGCAATCAG---------TA--TCTCTGGCGGGGTTGGTGTCTTCCAGGACTAGACTGTAACGTTCTCGGTGACTTGCCT---------------------TGTTTTC----------------------ACTAGCATCCATGAAGAAAGTGAAATCTCTTCGAGACCCTTCTTCCAAGATGTCAAAATCGGACCCTGACAAACTCGCCACTGTTCGAATAACAGACAGCCCAGAGGAGATTGTACAGAAATTCCGCAAGGCTGTGACAGACTTCACGTCAGAGGTCACCTACGAGCCGGACAGCAGAGCTGGTGTTTCCAACATGGTGGCGATCCACGCGGCCGTGTCGGGCCTCTCGGTGGAGGAGGTGGTGCGCAGTAGCGCAGGCTTGGACACTGCACGCTACAAGCTGCTAGTGGCCGATGCTGTGATTGAGAAATTTGCTCCAATCAGGAAGGAGATTGAGAAATTGAAAATGGATAAGGACCACTTAAGAAAGGTTTTACTTGTTGGATCTGCAAAAGCCAAAGAATTGGCCTCTCCTGTGTTCGAGGAGGTGAAGAAGTTGGTGGGGATTCTGTAGCAAG
s HiC_scaffold_1 109071613 2691 - 233722169 CTTTCTTCATCCCACATTGTTTTTAACTTCCAGTTACATTGTACTTGTAGATTttgttcatttcctttccctaCAGCATATTAATTGTCCTGTGATGGCAATTTACTTAAAACT--TAAGTATATTCCAAAAAGATCGTTAGTTATTCCCTGTGTGCCAAGGAGGAAACATTCTTGCCTGAAGAGCTGAGCTTTCTGCTATTTTTGATTCTAAGTTGGGAACGTGGTGTCTTTCAACTGTGAGC-CACTGCTCCAAGGTAAAAAGTACTTAACTAAGCCTGGAATAATATTCCCTGACTGGATGAGAAAACAA-AGTGACTTTAAAATGCAATTATGGGTACAGCATATGCTATTGAAAATCCCATTCATCCTCCCCAGCAAGGTCCTATCACACTGGTGTTGATGGCTGTATTTCTCTGctgtggaagaaacaaaac-agaatagacaaATGGCTATTAACTATTCATCTGATACACACATAAAGAATTGGTTCTCAATGTT------------GGTGAATATTTGTTGAACATCAGTAGTGAAATAGGCACAGGAAGTATAGCTGCTTACAACACTATTTCTTTCTAAGACACAGCCTTGCTGAGCTTTCCTGTCTGTCTTTTATTAAAGGTCCACACACGTTCCTGTTGGAGAAGATCAAGTCCAACACATGGAGCTAGTTCAGGATCTAGCACAAAGTTTCAACAAGAAATACGGTCAGTTCTTTCCAGTACCCCAGTCCATTCTAAGTAAGTAGCAAATGAGATTGTTAAATCATACTTGAAGAGAGGACTGGATAATATACAGAGACTTGGGACTGTTTTGCTACTAAACTTAACTTTCTCATGGACAGTTATAAGGATTTATAGCTCGAATCCTCATTTTT------TCATGTAGGACAA-----CTAGACTGCATTGGATTATTGAAAAAGTTAATTAAA-------ACTGTTGAGTTAGCATGagagaa-------------------------------caaaaactaaaaataata-----------------ctttaatgTA----------------TTAAATATGTAATTATGTGTATAcgttataattatatatatatatacgtatatttatacaatatat-------------actttta--------------------tttgaTGGAGCAGATATCTTTTCCTAtaagatgaataaagaaatgaaggctTGGCAAATCTTACTTTGTTTA---CCAATTTGTGTCTACTTAAAATCAGAGTTGGATCC--------------TACACTGAGTTCTTCTGTGTACCTTGCCTTcctaaatacaataaaata-----cgtCATAAGAATGAGAAC-----TGCTGAATA--AAGATCTAG-----------------ATAAAACAA----------GAGGGAATCAAC--TAGGTTCACACTCTGTCTACCTaaatggagacagagagatggaatgTGTGTAATGCACCTATTGGATCCGATCTGTCAGCCCCAGC--CTTCTGATGCTGTTCAGTCTGTATAACTT---CTTCATGACA-----GGTGCCACAAGTCTCTATCAGAGATCATGGAACCTG---AGCACTGTCCATCTTTATTAAGCTGACAGCATTTTAAAGGAGGATAATATGTGCCTAGTGTCAGTTAGAAACAAaaatccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg---aatgcattTAGCTCAATAGCTCACAACAATAAATTCAGAGTACTCCATACATTTAAGTCAACTTTCCT--TAGCAATAAATAGGATTTT----AATGTTTTGacctattattattttacttatttaaattttatatgtttcTGTAATGGCCATAAAATAGGCAATTACTAATAATAACGCTGGTTTATTAAGCACAAATTAACATCTTTATTCTAACAGCAATAAACAAGTCacatgtgactgtgtgtgtgtgtgt--------gtgtgtgtgtgtgtgtatgta-------aaacTTACATAATCCTGgatgagaaaatggaagaattGCCACAGATTGTTAAAATTG----------------ATTGAGGAGGGGA---------------------------GGcaggaaagacagga---------------------------aaagatt--------------ACTTGTAATA------------------------------------------GGGCAGAAAAGAAGAGGAATAGTTTAAAATA-------------------------------------------------------TGTACACAACAAAAGCAGAATGACTGACATAATTT----Tgtgtaaaattttacatt-------tttatgtgacTGTGTACTTTCAAAGATGCTTTAAAATGCACAATGTTAATGTTATCAGGACTGAGATAGTCATTCATACATTACTTGAGTTTCACTA--TGAG----TATTATTTGTATAATCaggtaaaataataattatttgatattcttgttgttttcaagatttatacAGTGACGTTTCTGGTGCtttgtttgtttcatattttgttttgttctgttttttggcaTGTGTGTGTTGGTATTACCCAGCATCTATGAAGAAAGTGAAATCCCTCCGTGACCCTTCTGCCAAAATGTCAAAATCAGACCCTGACAGATTGGCCACTGTCCGGATAACAGACAGCCCAGAGGAGATAGTGACTAAATTCCGTAAGGCTGTGACAGACTTCACTTCTGAGGTCACCTATGACCCTGCTAGACGAGAGGGCGTCTCCAACCTGGTGGCAATCCACGCTGCAGTAACAGGACTCTCCGTGGAGGAAGTGGTCCACCGTAGCATAGGCATTGATACTGCCCACTACAAGCGGGTGGTAGCGGAGGCTGTGATTGAGAAATTTGCTCCAATTAAGAATGAAATCGAAAAACTGAAGATGGACAAGCAATATTTAGAGAAGGTTTTACACACTGGATCAGCAAAGGCCAAAGAATTAGCATATCCTGTGATCCAAGAAGTGAAGAAATTGGTGGGTATTCTATAGGAAG

a score=5560
s chr3            99217829 211 + 160039680 TTCTCCCAAAGCTCTGAGGGCCAAAGTTTTGGA-CCTCTAAACATTCCAGTATTCAGTTTGGATACTGAAAAGATAAAGGCTGAAATACTGATTTTTGTTTATGTGAAC---TCAGCTAATGGTTGTGTATTTTAAATCTGGATCCAGCCACCTCTGGTCACACTTACCTTTCAAAACCCCAAAAATGGGTCCCATGGCCTCACTTCCAAATTCA
s HiC_scaffold_1 109075743 213 - 233722169 ttttcataaagctCTGTGAAGCAGCATCTTCAAGCCAGCAAACATTGTGATTTTGAAAGTGAGT-TTGGAAATACAAGACTTGAACCACTGATTTC-ATTTATGTCAGCAAATCAGCAAACAACTACCTATTTTAAATCTAGAGTCAGCCAATCACGATCATGTTTCCCTCTCAAAATTACAAAGATAGTTCCTGAGGTCTATCTTTTAAACTTA

a score=14920
s chr3            99222217 830 + 160039680 TTAACTTCAAGTTTCTCCCCATTGGGAG-CCCAAGGTATGCCTTAACCAGCAAGCCTCAGGCAGTGGTCAGACCCT----GCTAGTCCACAATCTTCT-----------GAGCT-------------CCATTAGATTCCCAATCCTTATGCTCCCTCTCTGTGCCCTCCTGCTTCTCCTGGTCTTCCTACTTACTTCAGTATTCCTATACTCAGTCATTCCCTAAAACTTCGTTTGTGCACACAACACAGCCCTTA----GCTTTTGT----------------TTCCAGT---------CAAGTGGCCCGTGTC--TGTTGTGAGTTAGCAGGAAGGA----------------------------------------------------------------------------------------------TTGTGCCAGTGTGGCAGTTCTCCGTCTCTTCTCTTTAACATGAGGATTCGGGTGTCGTCATTAGCTATATGTTATCCTCTTG-TGATCA---TTCTTTTCTCATTCTGTCAACTCGGTGGCTCTTTTGAATTTTTTTGCACAGGAAGAGTCAGTTCCTCCCTGAGATGGATCTGAAAACAGATTGCCTATCAGTAGCAACTAGGGTTTTCCAGCACC--TGGGGGCACAACACCCGGGAGGCTTCACTGCCAATCATTTTAAGTGCTTCTGTGTTAACTCTCAGCAACTCTGTTCTGTTGGCTATGTGGGCATTG-CTTCTTTCTTTAGAAAGTAGACCGGGGCTTCAGTGAATTACAAATGCATCCTCAGATAAGCAGTTCAACACTGTGACCATGTTTATGA---GTCTACCTTGTGACAGC--------AAATACAGTACGCTTATTATTTAGCAAAAGATATAGAGATTTGAGCTAGCAAATGCTGGATAAGC---TGGGTGAGTAATTAACATGGATATGGAGGGGAAAGATACCACAGGTTAGGGATAGCAGAAAGAACATTTAAA
s HiC_scaffold_1 109082340 977 - 233722169 TTGGCCTCTAGTTTCTCCTAGTTAGGAAACCTGAGCTACACCTTAACTACTGTGCCCAAAGGAGTGGTCTATCCCTTTTTACTAGGTCAGAATCTTCTCTCAAGACTTTGATCTTCTCTTACATCTTCCATGATATTCTGAGTC-TAATG-TCCCTCTCTA---CCACcagcctctcct----ctccttcctgtttCAGTGTTTCAGTA----ATTGTTCCTGTGTTCTTCCTTTAGGCACACAGCAAAATCACTATGTTGCTTTCTTCTGAAGCCTTGTTTTCTTCCAGTTCACTCTGTCTAGTGCTGTGTGCCAATGTTACTATTTAAATGAAAGGAAcaactatactatactatactatactatactatactatactatactatactacaCTACACTACACTACACTACACTACACTACACTACACTATACTATACTAAAGAGAGCAGTATTGGTCTCTT-TCCCTAACATGGAGA--CAGGTCTGCGCTCTCTTGGTGTGCTCGCCTATGGGTGATCAACATTGCTTCTTCATT--GTCAAATGGAGtgtcttttcaaatgttttagc-TAAGAAGAGTCAGTTCCTTGCTGTGACTGAGCTGAAAACAGATTGCCTATCACTATCAATTAAGACTTTTAAACATCCTTATAGGCAGAACAACCTGGAGGAATTACTGTTAATCATTTTAAGCTTTCATATGTTAACTTTCAACAATTCTGATATGTTAGCTAGGCAGGGATTGTCTTCTTTCTCTCAGAAGGAAACT-GGGTTTCAGCACATTAGTGACTTATACTC-GGCCTGTAATCCAACATGTGGTAAATGTTTGTGAAAGGCCTACTTTGCGAAAGCAACAGGGGAAACACAGTATGTGTGTAGTTTAGTGGAGGGCACACAGA------CGAGCAAATGCTGGGTAAGCACAGGAACGAGTGCCTGACAAGGAGGTTT-GGGAAAGGACGTGACAGGTCTAGGACAGATAAAAGGGCTTTTCAA

a score=65557
s chr3            99227717 3008 + 160039680 ATGAATTTGGTCTAGCCAAAAGCCAAGAGAATTAAAAGTGGTGCTTGGGAATGAAAAATTCCAAGCCTTATCTCTTTTAAAGGAAACTGCTCTTCTTTCCCTTCATTCCTGGAgcagcacat----ttgaatcacttggaaggcaaagatggaaagagtcaatgctgaagcctgggttcccagactcagtaagtcctgCTGCCTGGCTTACCCACCACACTTGCCCTATTATATGATTAATAACCTTTGTCCCATGT-AAGCCACTTCCTCTTGGGCT----GGGTTACAGTATGCTAGGCACTACCATACCAGTTTC----------TTGCCTAATAGTTCCTCCCCAGC---TTGCTTTGTTTAAGC---------------TTGTGCAGGTTACACTCTGTGTGCTAAGGCA--GGTCTAGCaactatgaa-ccccagaccagatacgctaaggtttcctaggcacttacttgttagctatgtaaatcca--gtctctacctcagagctactgaacgagaaactggaaatgaagcttagctacgagcttttaacttgaagcaaaatgcatgtatagacatttaagagccactgTACTAGGGATGAAGCCttttaaaaaaattaataaaaaCCAGTCCCTGTCTTCAACATGTTTGCACCG-------ATGAGAGTTAATAAGTCATAAAAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------CTTG----------------------------TTATCTTGGATCTCTGTTATTTCCTGTCTTTTCC--TTTTTAAATAATCAAGTTCACTCAGAAAAAATATATGTTGAATTGTTTTTGTTTGTAGAAGTTA----TTACAGAAATCTTAAAACTCTAAGGTCATTTGAGAGCATTCAGATCATAAAGGGGGAAATAATT--AGTTACAGTTGTAGATAAAGTGAGTAGAG--TCTGGATCCCCaatgctgaaattaatgaagaggtcctgaagccaagagagacaaacaagaagaggtagttattt-acacagtgggtaataaaattacagtacttattagcctgtaaagggttatacgctctagaaataaaaacagttgagcatggattaaatttatgagtgagaaagtcataaaactgtattaagtgcaagttaggaatgcTTGCATGATTTCTGAAAGTGACTGGCATGAACACAGAGGGAGGAAAGCTAC-------------------------------ATAACATTCAATGATCAGAACTCTAGAGCAGAC-AAGATCGA----TGCAGGACAGGTGATGTACTGGTAAACAGACTAGGTAAGGTAAAGACTCCCTTGATTAGCATATTTCATGTGAAAACCCCTTCACATTTTAGATTTGATGGA----------GGATTTAATAGAATATAGTAGATGCAATTCATAAAAGAGTT-----TTTAGAATAAAGTTCATGTGTCATTATTCTTACTAACAAGAGACAACT-AAATCATTGAAAGCATTATATAATTCtgctttcatttggaaatctgtaccccccaaaaacctaggtttta---ggttggtcc-aagcccatggtgctattgggacaaatatgtgaaaaggtagaacttgaatggaggtcttctagtcattggggggcatgttcttgaaggggacattgtaacctcagtcccttcttctttttctgcttttgtgtctcagtcatgagatgagcaggtttt-cttcgtacgtctatcataatggac-------cggccatagacctaacccagatgggttcaactgaccatgggatgaaacttgcaaagctgtgagccaaaataaaccttctctctttattcattgattgcagcaggcattttcttacagcaacagaaa---------aaccgacaAACTCAGCAAACGTTGCTATTACTATACAAAGCAAAACTGTGTTCTATCTTCAGCACAAGAGCTTCCCACTGAGACTAGAGTGACATGCAGATGAAATGTTCAGTGAAGAGTAGCTGGAGAGATGGCTCAGTGCAGAAGGAGTGTTTCCTGCATCTAAAC-CTAGCTAAGCGTGGGGCATTCTGTGAATCTAG-CTATGGTAATGATGAGGTGGCAGATAGCATT-GCCCAGTGTCCTTCTGAACTTCACATGTGCTA------------------GATTCTACCATTCATGATTAGGAACTCTAAACTTATTTTACATGGCTGCCACTTAGTGCTATAAATCACTTTATCCCCTAACTTGTATGTTTTGAAAATTCTGTAGTGTCATCAAACTACTAGCCATTCTGATAAAAGAGTGACGCTTTCCCTCCTTCCTCTACTTCTTTTTCTTTTCAAGAACTTCCTC--TAAGTTCTTCACCAAAGTATTGTTAATTACAATCTCTATTCCAAATAATTTGGAATCAAAAGTATTCCACAGTCTGGAGGCAAGTGAGAGCTTTATTGCACTTTTATGGAGAGTCAGTTGAATGTGGTGGGCAGACTAAAGAGGGGCTCCTCTATAAGGCCCAAGCATGCCCTCTCTTTCCACCCCAGCAAGCACTCATGTTACAAGAATCACATCTCTGATCTGCTTTCATTTGCTGGCCAGAACTAACTAGCCC--GGGCACTACCAGGCAGATTAACTCCTTCCTGGTCCTCAAAAATCATCCACATGAGGCCTTGTGTGGCTCTTAGAGATCTCTGTCATTCTTCTTATAACTTTCAAATATGTTCCT-------------------------------------------------------------------GTTATTGGG------------------TTTTCTTGTGTATACAA-----------------------------------TACATC---------------------------------------------------------------GGAAG---------------------------------------------------------------CACTATCCCTTTCTTATAGATAATCAGTGCCTGATTACAACATTGCC-AGCTAGCCTGTTTATTGCAGCTAACATTTG---CACTAAATGTTACTATTCTTTTTATCCATTTTATATGTACTTATTTGTAAGTACATTTGCGCATAAATCATTGCAAAAATGTCAGTTTCTTTTTATTGTTGTTTTTGTTTGTTCGATCATTCTTGTATGAGGCACACTAGTGCACATAGGATAGATGTAAAAGTGACGCTTATTGATTAAAAATAATCCTGACTGGAGAGAGGTTAGAGGTTGTCAACTCAAATGGTTTCAAGGGGAAGACAAGTGTGCAAATGCATTACAtcattttacagatgtttattcagtgcctgctgtgtatgctggccac-taaactaggcagtgactgtacagcaatgaacaaaagtataaaaa
s HiC_scaffold_1 109087081 3415 - 233722169 ATAAATTCACTCTAGTGAATGG--GATAAGAAcaaatgtaatgtgtg-------caattTCCAAGTCGTATTTctt---aaagaaact--------------caaatcatGTAACAGCATTTATTGTTGGA--AATTACAAGGCAAAGATGGGAAGAATGAGACCTCCAACCTGGGTTCCCA-----------------TGAATTATTTACCTACCTC---TGAATATTTACAGGATAAATaacttttatcatgttttaagCTACTTTCTcttgagctctctgtgttatagtACCTTAGGT--TAATATACTAATCTTACTAGCCCATTTGTCTAATGTACACCCTCTAATCAGTTACTTCAACTCAATGGGAAAAACAGTATTTTGTGAAAGTC---TTGTGTGTACTGAGGCAATGGTCCTCTGACTCTGAGTCCCCAGACGAGCATCATCGGGATCCCCTGG----CGATATGTGAGATATGCAAATCCATAGACTCCACTGTACACTTACTAAA----AGCTTGAGATTAAGGATTATAAATCAACCGTAATCTTCAAGTGA--------TCTAGATGTTAGAAAACTACTGTGCTAGCAAAGAAAggctttcaaaaaattaataaaagccaATC--TGTCCTTAAGGAGTTTACattggagaaaaaagagaactaatgaataataataaaaacacaattatcACCAACCATGGTGgcatatgtctataatcccagcattttaagAGACTGGGGCACAAGAATGGCAAGTTCTAGCCCCGGCTAGATGATTTAGCAACTCAGTGgaaatctgttaaaaaaaaaaaattagggatatagtatagtataaaGATCTTGGGTTCAATATCTAGTATTAGAAAACAAATTATCTCGACATTCTGATAGTTCCTGTCTTCTCCCATTTTT---TAACCAAATTAACCCA-AGATAATTTA-GCTTAgatgtttttgtttatatatgtGAGTATTTATAGAAAGTTCAAAA-TGTTATGTCATTTCTGTGTATGTAAATCATACAAGGGGAAATAATTGAAGTTGCATTTGTAGATATAGTGAACAGAGATTTTTGATCACCAATATTAGAATTAATGAGAATTTCCTGAAGCCAAGAGGGACAAATAAGAA-AGCGAGTTATTTTACACAGTGAGTAGTAAAATTACGCTACTTATTACCCTGTAAAGGGTTATATAACCTAGAAATAAAAACAGTTCAGCATGGATTAAATTTATGAGCAAGAAAGTCATAAAATTACAATAAGCACTAGTTAGGAATGTTCCAATTATTTCTGAAAGTGTTTGACATTAATATCATAGAAGGAA-GCTACCATGTCTGTGCTGTCACCACTGTTTATTATCATAATTTTCAGTATTTAGAACTCTAGGAAAGACCAGGATAGGCTATTGTGGTATTAATGATAGCCTGGAAGGTAGATTGGTGAGAATTAAGACTCTTGTACTTA-TGTATT-CATAT-AAAATCTGTACCCTCTTGAGGTTCAATGGACAACAATAGCAAAGTAAGTAAATGACAATGGATGCAATTTATAAAAGTATTACTATTTGACATTAAAGACATTGTGCCGTTGTATTTATTAACAAGAGACAACTCAGATCATTGAAATCCATAGACCAtcctgctatggtttgga--tcaGCGGCTCCTAAAGGCCCATGAGTTAAAGGTTTGGTCTTCAGTCTAGAGCACTATT--------------ATAGAGGGAGACTAGGATGT---CCTCTTGGACATTGATGG-TGTGCCCTT-AAGAGGACCTTGGGACCCCATATCCTTCCTATCATTCC-TTTTCATGTCCTAGTTATGAAGTAAGCACTTTTGACATAGAGCTTCTGTCATGATGTGCACATTGCTCGCCACAGCCTCCAAACAGCAAGGT-CAACAGCCTGTGggttgaaacctccaaaactataattcaaaataa-ccttttctctttataaatcagTTATATGAGGTTTGTTGTTACAGTAGCAGGAAGCTAACACAAACCCCCAACTTAATAAAATACTACTATTACTATTCACAGCCAACTGATCTAATGTCTTTGGCATTGGGGATAAACACTTTGG--ACAATGCTAT----------------------------------------------CAAAAGAAATGTTTAGAGCATCCAAAAACTGGCCAAGCCTGGGAC-TTCAGTGAATCTAGACTTTTGTGATAATCAACAAGCAGTTATCACTCGCTCACT--CCCTCCAAAATT---ATGTGACACTTAAGAAGAAGGACTTTAATTTCCTTACTCACTGTTAGGAACAGAAAAGTAATTCTACATGTTTTCCACTTGctgctaaaaattatttta-ccattGGTTCATTTGTTCTTAATATCTTGCAATGTTTTAA-----CTATCTGGCTTGATAAAATACaactactttgttttctttccttcttttttattttttcttaaggcTATTTCATTCGATTCTTTCCAAAAGTACT----ATCAGGAACTCTATTCCAAATAGTTTAGAATCAAAAGTGTTCAACAGTCTGGAGGCAAGTgagatttttattgcatttttatggAGAGTAAATTGAACTGTGTGAGTAGGCTAGAGAGGGGCTCCTCTGTAAGGCTTTAGAATGCCCCCCTGTTGCACCCCAGCAATGACTCATGTTACAAGAATTACATCTCTGATCTGCTTCCATTGGCTGACCAGGCCCAACCAACCCCTGGGCACTACCAAATAGGTTAACTCCTTCTTGATCCTTAGGAACTTTCTATAACAGGATTTATATGATTCCCAAAG------GTCATTCTTCTCAtagctttcaaatattttcctaataTGAAGAACTGTATGGTAAACTATAACCACATCTTATCGTCACAAACTTGTATAACACATCAGAAttattgtgcttttttcttttcttttttttttttttttttacagttctggggaatgaatccagggccttcatattgagctacatccccagtctgcCATCATCCATTATaaaatttttgagatagaatGCTAAGTCACTTGAATTGCTAGGAGGGGCTCTAACTTTCAATATTATTGCTTTAGCTTTCTAGAGGAGCATGCATCATAATGCCCATCTTACTATCCTGATGTTACAGATAAGCTTTCCCTGAGGACTTTGTTACTAAGCTAGTCTTTTTGGTGGAGTTGATGCTTGTTCCATAAAATGTTA----TCTATATTTTCCCTTTATGTGTATTTACTTGTAAATACCATTGAGCACAAAGTATTGCAAAa----tgattgaattttatttttctttttgttttgtaaattattttagtaTCACGCACAGCACTGAGCAATGTGTAGATGCAAAAATAA--GTTTTTGACTGAAAACCAGCATGAGAAGAGACAGGTTAAAGTCTACAAACTCAAATGGGTTCAGGGAAAAGATGAATATGCAGATCtattaaac--ttttataaatatgtattcagTACTTAC--TATATGCAGGATACACTTACTAGGCACTGGACCCACAGCAGTGAAAAACCAGACAAAAA

a score=113237
s chr3            99233134 10942 + 160039680 [encoded data, 12693 characters]
s HiC_scaffold_1 109097618 11643 - 233722169 [encoded data, 12693 characters]

a score=294947
s chr3            99247584 16591 + 160039680 [encoded data, 18151 characters]
s HiC_scaffold_1 109111802 15826 - 233722169 [encoded data, 18151 characters]

a score=78960
s chr3            99264566 4010 + 160039680 [encoded data, 4489 characters]
s HiC_scaffold_1 109127645 4019 - 233722169 [encoded data, 4489 characters]

a score=112220
s chr3            99271800 7535 + 160039680 [encoded data, 8670 characters]
s HiC_scaffold_1 109134719 7626 - 233722169 [encoded data, 8670 characters]

a score=59569
s chr3            99280047 2981 + 160039680 TTTTAAAAAAAAttaattcatttttttacactccatattccactccctgcccctGTTCCCCCGAAGACAGACATCTTATCCCAGATAATGAGTGCCGTGTAGACAGGGAGACTGATCTGTACCACAGTCATGGTCTTCAGTTCCAGCAGAGAAAACAAATCACATGTTCATCTTAGCAGTGACTCCTTTGCTCATTCAACAAGCAGAATTC-----TAGGTGCTGG--AAGGGATAAGGGTGAGTAAGCGTGGACCTTGCTCTTTAGAAGATA-ACACATATTCAGATAAATAAAATATAGGATGATGAGTATCCTGTCAGGTTGTGGACAGAAGCTAGGAAAATG--ACCTGATTTAGTCAAGCAGAGCTGAAATGTAATTTTTTCATCCCCTGAATCCTACTTAGTTCTCCACCTTAGGGACAGGACGAAGCTGGA-CTCAGGAGGCAACCATTTTCCTACTGTCCCT--TTAGCCCAGAGGAATGGCTATCCCTACTTTTCCCTCTGTCCTTTTCTGCTACCGCTGCTTGCAGATCCCTGCCTGGGACATCTCTGTGCTGATGACAGCAGAAGTAACAAATTGCTCCTCTCTCACACCAACAGGCTGTTTTGGGTGACATCCAGGATGATTAGATTGCACTCCTAGTCATTGCTGCGTAGACCAGACCTCAGATTGTGCCCTC---CCTCCTCCCTTCAAGG------------AGCATTTGGGATGACGGAGCTGGGGTGACCACTTGTCCTTG-TTCCTTACACCCACTC-AGCTTCAGAATATGCAGCCACAATCCTGAGAGAAACTGCCAGCCCACCTACTTGTCTGCTTGGGAGACTGAGTTATCTCATTTAAATTACAGCCTTGTGCTGTCTGCTTGGCACACCTTA---GAAGTCCTCCCCTTCTTTCTTCACCGTGGCCTCTTGGTCTACCTACCACACTGTGCAAACTTTGAAACATCTTGGGATTAGCTTTCTTTTCTAGCATCCTGGGAAGGCGGTGGCTGTGAACCGGA-------AGAAAGTGGGTCACCAAGTCTGGCATCTCAAATCATTTA-CTTGAAAACATGGAAGATGggggcactcagggagatgcctcagcggggggggggggggagtgttttctgtgaaagcataatgacccgacttcatatcctgagcacccatagaaacagctgtgtgtgttgtgagcttctgtaatcccagtgctgggatatggagataggaggctcccgggggcttgctggctagccagtc-tggccattcagtatgctccaggtccactgagaaaatgtgtggcgagaaatagaggaagacacccaaaattgatctgtgagctctttgtatgtgcatacatagcacCCATCCACACCCACACATTCATACCTTCCCCCCGCCCCCCCCCCCAGATGTTGAAACAAGAACTGGTGTCAAGGGTGATGTGCTGCAGGTGTGCTTCAGGTCTGCTTCATATCCAGTTGTTTCCATTCAGCTGCGAAAAAAATGCACAGAGCTCTTGAAACCAGAGCTTCATGGGTGCGAATCAGATGAAACTTGAACTGAGTGGAAGGTGGTAAGTTTCTCAGTGCAAGCCTAGTGGGTGGACTTGGGCAGAAAGTCACGTTGAAGCCATAAACACAGCAAGATGGAGAGGCTGCCAAATGCAGAGGCAGAAATAGCT------------GAGGGTCCCCCATCCTGCCTCTCTCAGATCCCAGGCTCCTGCCAGA---CACGTTCCCTTGCACAGGTGTCCCT----CTTTCTCTTTGTTTCTTTCACTCCAAGCTTCC-TCTGGCTCCAGGGACTCTTCAGCCACCATATAGGATTATAATTGTTTTGCCAGTCTCCAAGCTGCTGGACCGTTtttgtttgtttgtttgtttttgtttttttgttttgttttttgtttttttggttttttgtttttttgAGTACAAGAGAGAGTGAGAGAAGCCAGCCTCTACAGAGAGCGTCTCTTTCTGGGGAAGTTACAGAAAACACACCTCTTTATTGCGCCCCTAGACAACATTCTGCAGGTGTCTGTGCAAGCAGGAGAAACTGGCTCCTAACTCCAGTTTCAATCATATATATATTTTAGATGTGTTGACTTTATTATAGATCTGTGTGTTCCTTCTGGCTTTGCATTCAGAGTCTATCAATTTCTTATTCAGGCTCTATGCAGCTCTCA-------CTGTGCTGAATTCATTCACGATTTCAGAATGATGAATTATTGGGCTGTAGTGGAACTGACATTGCTCTGGAAAACAAAGCTGTGTGCTTTGCTGGCATTCTGAGCACTAAGGTGATTTTAGGAGATGGATAAAGGCAATTGTCATGAAACAGGTGCTGCCCACAAGTAACTCCAGGGAGGGCTCAGCCCAGCTTGCCAAGGATGGTGTGGAGTTTTCCGGCTCCAACAACTGGAGCCCCAGCAGTGCTGACAGAGGGCAGGGACTGGAAACATCAAGGAACGTCATCTCTCCAGTCCCAGCCCGAGACAGCTTGTACATTTCACATTTAGATGCAGAAGCCCTGAACACCT-GCAGCATACAACTTTCTGCCTTCCGAGGGAGAGCGGATAGTCTCTT--GCAGATG--TCTAAGTGCAGAC-CTTATTTGTCGGAAAGCCTTCTGGCATCTGCGCAGAG-GCATCCTGCATAACCCAGCACTCGGAGTGGGATGAGAC--ATGAGATGATAGAGGAAGGAGC-----CAGCACAAATCCTGGTGCAGAGGAGTC-CTTAACTCCCTACCTTCCTTTTGATTCCAAACCC--------------CTGCT-CTCCTGCTCCTCCGAGGAAACTGACCAGAACATGTACTTGAGTTCTTTGCTACCTTCCTA---------------------------------------------------------------CTACCTACCAATCATCTATCTGACAGGAGTTGTTAAATCATTGGATAAATGCTCAAGTATCTATGCTCAATTTT-------TTTTCTAAT-------ATTTGCAGTATTAGAACAGTAAGCATGGCTCTCCACCAATGCTTTGCCAATCTTTCCT-----TTACTCTTCCAGTTGC--TGTTTTCTTTTCCTAGGATGGGAAAGCCag
s HiC_scaffold_1 109145637 2643 - 233722169 TTTTAAATAGCACTGGAACATTCTTTTG------atacttttttccct----ttatcCCAAGGAAGATAGCTGCCTTatcctaga----gacagttgtgcaAC-----AGATTGAGCTGTAGCAC---------CCAGAGTTTCAG--GAGGGAATAAATTAC--TTTTATCATAGCAGtagttcattcactcattcaataAATAGAGGTCAGAACTAGGTGCTGGTGGAAGCACAAGGATGCA-AAATATAATCCTTGTTCTTAAAAAGACAGACAAGTAATCAGATACATGTAATATAGGGCAAAAGGTGCCCCAGCAGTTTATGAACAGAATCTGGGAAGACAGAACCTGGATTGTGAAAGGACATCCAGAAAgtcattttc-agttttctaagTCCTACC---------------AGGAATGAATGAAGGAAGATCTTGCGGGGCCACTGAT------CTATCTCTACTCAGCCCAAGAGaactgctgtctcc--------------tctttcCTGCCATTGCTGCCTGCAATGTTTTGGCTAGGATCTCCCAGTGTTGAtgacagcagaagtaacaaattGCTCCTCTCTCACACCAAGAGGATGGGTTGGGCCACGTCCAGGATGATTAAATTGCACTTTGAGCCACTGGTGTGTTGACCAGGCCTCAGTTActgctctctctcctcctcccttcaaAGCAGCAAGAAGCAAATATTTGGAATGATTGAGTCAAAGTGGCCACTTGTCCCTGTTTCCTCACACCCTCTCAAACTTTAGAACATGAAGCCCCAGTCCCAAAGGAGATTGCGTGTCAGTC-AGTAGCCTGCTTGGGAGACTGTGTCATCTCCTATAAATTACAAACTAGTGTTCTCTGTCCCACATGCCTTCCCTGAagcccttcccctcctcctaTA---TGGTCTCCTGGTCACACTACTGTGTTCTGGAAACTCTGATGTTTCTTGGGAATGTCTCCCTCTTTTTAGGCCTTGGGAC--TGGGGCCTGTGCACATTAAATTTTTAGAAGCTCAGTCATCAGGCTTGACCTCTCAAGTCAATCAGCTTAGAAA------------------TCAGAGAGGGG----AACTGGAGGCAAAGATGA--------CATGGAAGTGCA------------------------------GGGAAGAGCTGCAGGTGTT------CTCT-----------------------AGATCAGA------------TTTAC-----ATCCAGTTGTTGccattcag---------------ctataaaaatgcaTA------------------------------------GAGCTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAACACTCAGAG-----------AGAGCTTCCT-GATGTGAATCAGATGAAACCTGAACTGGGAAGAAGGTGGCAAGTTTTGCAGGGCAAGTCTAGCAGGTGTAC-TGGGTGGACAGTCACGTTAAGCCCATAA--ACAGCAAGATGGAGAGGCTGCCAAAAACAGAGGCAGAAATAGCTGGGTGTGTGTAGGGGGGTTCCCTACGAAGCTACACTCAAACCATAAACTCTGGCCAGGCATCATGCTCACTTGCTCCTGCCTCccctctgtttcttctctgcttctctctttccaagtttttgttttccttcaatgATTCTTCAGTCAGCTGACAGGGATGCGTTTGTCTTGCCAATCTTTGAGTTGCTGGGCC-------------------------TTTTCTTG-----------------------------------GAGTGCAAGAGAGA----------------------------TTCTCCTCTTGGAGAAACCACAGGAAACCTGACATTCTGGTCTGCTCCAAGGCAATATATTCCAGGAG-ATGTACAAGGAGGAGAAATTGGCTTCTGGCTCTGATTTTAAT--TGGGGTGATTTTGGATGTGCTGAATTTGTTGCAGATATTTATCCTTGTTCCTGTTTGGCAGtcgtattccatttctttctcatttgttccATACGTAGGTCTAGAGAGTGTCTGAAATGAGTTCATTTGCTATTTAATATTGATGAATTAGGAGAC--AAGTAGGGATGataattttcaggaaaacaaCACTGTATATTTTGCTAGTGCTTAGA----------GGGTTTAGAAGATGGGTAAAAGCAATAGTATTATAACAGGTATAGTGAGGCAGTAACTCCAGGAAAGGTTCAGCTC--CTAGGCAGGAATGGTGTG--TTCTTCCACCTATTGACACGGGAGCCCCTAGAGCTCTGGCAGAGGTCAGCTATTGGAACTCTCCAGGACCATCATCTCTCAGGCACCAGCTTGAGACACCAGGTACATTTCATGCTTAGAGGCAGAAATCTAGAACACCTGGCAGAACACAGCTTTCTGCTTTCTGGAAGAGACTTGATGGTCTCTCCAGCAGATGTCTCTAAATATATACTCTGGTTTGCCCGAAGGCTTTCTGGCATAGGGGCAGAGTGCCTCCTCCACAGTGCAGCATACAGAGTTGGGAGAATTCAATGAGGTAATGTGGGAACCACCTACCACAGCACAGATCTTGGTGCATAGGAGGCACTTTATTATTgatctttctttctgttccacACTCTCTTTTTGCCCTTATTGCTACTTTTTTTCCCACAAGAAAAGTGACCAAAACATGCATTtgatctatcatctatctatctatctatctaatctatctatctatctatctatctatctatctatctatctatcttctatgCGTTgctacctatcatctatctttttaATAGAAGATGTTAAACT----GATGACTGTGCAGACATTTTCTCTCCAAGTTAGAGAGACTTTCTATTAACTTGCATTTACGATATTAGTGTACTAGTCATGGGGTCCTACCCATCCTTTAGCAATATTTTCTCTGGATTTCTATTCCAGGCTCCATGTTTAGTTTTATGA-----GGCAAGCCAG

a score=60417
s chr3            99284996 3329 + 160039680 tcctctttaatctgtcactcttactcagccttctttgt------tgaccgtgttaacttaagaagtgcacggatgagctacttcgtgggcagctcagtgagtaggtctgtgtgatattcccttgggtttacactgagggtaag--------atagaagcaccataagggtgaagtatcattatcaaaatctgctgatactggtt--tatcctgttggggatgttaactctgatcacttgattaactgataccagctatgtttttcctatcttcatgtaaaaatattttgca--------------agtaatcccatggagacattttaatacctcacaaacatcttgctcctaatcacagtttcattt--acctcttttagtattctttagacatttttgtctCTACTTCAAATT--TCACTTACATTACAAGGAAAGGAA----------TTTTCTtttgtctgtctgtttgtc--------------tgtctgtctgtctaactatctatctat---ctatctacct-----atcATATTGTCGTTGATTTGGTCTGGGGAAC-------------GCTGCTGTGTGCTCATTTGCAACTGCACCCATTCTTTGAGCAATTCTGGACCTTCTGATGCA-----------CCAGGCTA---------TTCCAAGAGCAATAGGATTTTATGTTGGTTTAGTA--CCTGCTCTGTTC--------TGATTCTAATTGAGGATGGAGTTTGGATTCCATGTGGAAAAGTGATAGTTTTAATGTCACTTG-ACAT----------------GGCCACTGCAGCATGCACATTTGC--TGAGATGGTATCCCAGGTTTGCCCTAGAAAGCCCCCTTTTGGACCCATT----------GTTTTGAATTGCAAGTCTGGATGTGACTCATACAGCTACAGTGGATAATCATTTTGATTGAA----TTGGTTTATT------------------GGGATTGTTAG----------GAATTGAAGTAAGGCTTCCTGGG----GAGGAATT----------GGAGGAA------GGCTCCCATCTC-------------------------CATGG----TCTCTCAATATACTTCTATTGGTTCATTTTTTGGTTGATAATAT---TTGATCTTCTTTGTTTTGATTAAATATGTATACACCTTT---CCTGGAAAGATAGA---CTATTTTATAAATGGTGTTTTTATATCTGTACTATAGATCTCTATATGACATACTTACAAATGTCTGGGTCTGATATGAATAAGCCCTGGGCCCTCTAAATTGCCACTACAT-----TTCCTTAGAGGCTAGGGTAGGATCATACATGTGATTAAGTCAGAA--------------------------------------------------------------------TAGACTAAGCATA-------------------------------TATATTTTTTT-------------------------CACACTGTCTACAT--TATATTGTAATTGCCTTGGGGGTAAAGACCTGAATTATACTTATTAGCATTCTCCATTTGATATGTTTGGTAATTATTAATTGATAGCTTCTCTGGAGCAGATCCAATTGCTTTGAAATGTATGAGATTTGTTGATGCTTGAAA-ATATAGTTGTTTCTGGGTTAACCTATACTCATGGCTTTGGGAG--GGTCTGGACTTTCCTTGTAAAGTCAAAAATCACTATAGCAATTCAGAGTTCAGTTTTCAT-CATCATATTACACAgagagggggaggaaggagggagggagggagggagggagggagagagagagagagagagAAAATATGTTTTATTTAAGAGGCAGATAACCTTTTAAAAGGAAGAGGCTTAAGTATATTAAGAAGTTCAAGATggaaggaggtggcacatgcttttaatcctagcactctggaggcagaggcatgctgatctctgagatgcagggagcctattttactgaattctaggacagctaaggctgtatagagaagtcatgcctcaaaaTTAAAATATAAAAAAGATTAGATGGAAATAAAGCGGTAGCCCAGATGATCCCCACTGGTGGACTGATGGGTAAtcttactgcaaggaagttcttccttataATCCACAAATGACAATGCGTAAGTGACATCAGTGTTGTCTATGTCTTGTGAAGATGGGCTATGGAAAGATGGCATATACTCTGTTTCTTTCCTTGGTTCCCACTCCTGGGCCAACTGAAGTTTAAAGC---ATAAATTCTTG---------------AGATGCTGGGATTTTTCT-TCTTTGTGGTGAGAGCAGGTTCTGAAATAACTTGGGAACTGTGTTGT----GCAAAGAGCTTTCAAATGATGCAGAACACCTAGTTAGGTTCTCCTCTCACTCAATG-GTGGAAACCAACAGTTAGATGAAGGCACTCCCCCAAGGTGAAATGAATATCAGCTTGACTTATTAATCCCAGAAATGTTCCCTGTCTTTGAGATTTGCTGGTAGG-CATGCTTGCCTTAAGTGAAATGGTTAGACTTTTCTTTAAGCACATGAGCTCTCTTGCTATTTTGGGCAATCAGTCTCTacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacaaacaTGCTTAATCAGGAACGAGGGCAGAGTGAATTCCATCAACTTTGTCCTGCCCTGCATTACAGTGTCTTGCTCGGTCAAGGAAATGCTCTTAAAGAGTTTGTTCTCTTCTGTGACCATACTCTCTGGATTTTGATTAGACATTGCAGTATGTAATGTACCCCTATTTTAACAGGCATCCCTCCAAATGAGGATACAATCTGGCTCACAGTGGATGATAGCTCTGCCCCTGAGATCTCCCGGGGACAAGCTGGTGCTTTTAGAACTGCCTGATGCCTTGATCTTAATTTATCTGTTGTATTCAATATCACTGGAAGCCAGGAAAGGG-CAAATGGCCGACCTCTGTTTCAGGACTATGATATTGCACCTACTTCAAGCTCCCTTTGATCCTTGCTTTGGCTAGCCAAGTAGGGGAGCTCCTTTAGTGTTCCCTGGTCCCT-AGAGTTGATCTGACTTTGTTACTTTATGATATTTAGTGGTTTTGTTACCATTCAACCTGATGGCAGCTTGGGGC-TTGGAAAACCAGTGCCAAGTATCTGATTAGACTGAAGTTGTTTTCCAGGCGTCCACATTCAGATCAG---TGACCTCAGCGACTGTCTGTCCAGTGACAGTTTTTGAGAGTTAGGATCTGGACCTTGTTTGGTATTTCAGATTATGAGAACTTTGAACAGTGGGCAAATGCTGTTGTAGATAACTTACAGTGCTCATGTTAGATCTGCTCCCACTTTTGAAAGGAACCACCCTTTAGTTC-----ATTTTAGAATACCTATTTAGGACCAATTTAAGCATTTTGAGATAATGTATACCTTTTTAGGGGATAAAAA------TTAG---------------TCATGTATTCATTTAAAAGTTTGACTATCTTGAGTGAAGGTCAATTGACTTAAAACAATCTTG--------------AAACAAACCCTATGTGTAAAATGTTAGCTCTGGGTTAGGAAGTCATGGATTTTAGATAACTTCCCTATGTGCAGTATCATACATATTTTAAACACATGACCTT
s HiC_scaffold_1 109149694 3262 - 233722169 ttcattttaatctaGAGATGTTCTGCAACCTTCTTCGTCTTTACTGACCTTGTTATTTTTTGAAGTACACAGACTAGCTATTTTGTAGATTGTTCCTCAATTTAGCTTTTCtaatatttccttttgtttagATTTAGGCCATGTATTTTCAGTAGAAAGATCAAAAAATTCATGCCCCATATAAAAAATCTCATGATATTAATTATCACAATTTTGGTGATGTCAAGTTTGATCCCTTGAGT----GGTGCCAAGCAATTCTTTCCACTGTTAAGGTAG---TTTGTTGCACTTTAAAATGGATGAATAATTATGTGGAGATACTTTAGTTCCACATAAGCACCTTTTCCCtgatcacattttcaatttaacttctttcaatATCCATT-TACACTTTTGTTTCTACCTATATTTATTAGCTTACCTTCCCCTGTAAAGAACAgctttgcctttttatttatttgcttacttaTTGTTGATTAAGTAAATTcctgttttatttaatatttatatatgttttatttattttgacactCAAATTGTCCATGAATTGTCCAGGGGAAAAACCTTCAAATGAGTTCCTGGGTTCTTATTTATGA-TACCATCGTTCTTTGAGTACTTACTTCCTTTCTGATGCAATAAGATTCTCCAAGGTCACTTATAGTTTTCCAAAAACAATGTGTTGAAATTCTAATCTATTAATCATATTCTTTTAATGGGAGGTCATTTTACGTGATAGTGGGGCTTATATTGTATGTGGAAAGTTGACTGGAT-GTTGTCACCAGTACATATTATTCTTTCCATGAGGCCACCA--------ACATTTACCATGAAAAGGCATTCTCAGTGAGCCTT-----------CCTTGAATccattttttgctttggttttccaTTACAAGCTTGGGTGTGATTCACATAGATGCAGTGGTGCATTATTTGAATTTAAGTGGTTGGTTTATTTTTACCAATCCTGAGCAGGGGGTTATGGATACAGAAGCAGACTAGACAAAAAGCTCATTAGGATGAGAGGATTTTGCAGACTGAAGATGAACTCTATGACCCTTATCTTGCTTAGAAAGATGAACCATTTTATacatgaattcttttttaaaaaatttttattaatttatttttttattggtaccggggatcgaactcatgaccatgaacttgcaaagcaggcgcttatggccctg---agctaaatccctagcccctagatGA-ATTCTTATACTTGTACTATAAATCTCTATGGAACACATACAGGGAGGAGTGGG-CTCATGTAACTATGCGTTGTACTTACTAAATTTCCA-TAAATAAGCATTCCTTTGAGCCTAGAACAGGGCCAT------GGTTAAATCAAAAGGGCACGACTCTAGGTCTGACCTTTTTCACTCCCTGATGGCTCTGACAGCTGCATTTCCAGACCCTGGTAGAAAGAGTATTGCCTAGTAAAAGAAGAGTGTGccaaggtttttaaattttttttccctgtccAACAGTTTTATGTTTCCACACAGTCTACACACTACATTGTAAATACCCTGGGGGCAGGATTCTGAATTGTACTT-----------------GAGATGCGTGATGA-----GAGTAACAG-----------------------------------TGAGTTTTGTTGACTTATGTAATATAAAGTTTTTGCTGTATTAGCTTAACTTCATGGTGCTGGGGGTGGGTATGAACTTTTCTTAgtagaataaaaattattataccaACT--GGCCTCACTTTTcatatatcatattttcttttgaa-------------------------------------------------aaagcaCATTTTCCTAATTTCAAAGGCAGATGACCTTTCAAAAGAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATTTCCATTGGTGAGCT-ATAGGCAAACTAGGGTCAAGAAAAACCTTCCTGATGGCCCTAAAATGACACCA------TGACTTCTATGCTGTCT-------GTAAGGATGAACTGTAGCAATCTGACTTATG-TGGGCTTCACTTTTGGGCTTC-ACTCCTGGGCTGA-TGAAGCCTGAAGCTTTATAGGTTGTAATTCTATCACCCAAGCAGGTTCTGGGTCTTTGCCACCTTTATGGTTGGGGTAAGTTCTGGTGGAACTTGAAGGCTGTACTGACTTAGTAAGGACCTATTGAGTCATGTAACACATGCAGCTGAGATGCCTGTGTGCATCATGTGTGGAAACAAATAGTTGGATTTGGGAAATTCTCCAATCTGAAATGAGTATCTGCTTGAGTTACTAATCACAGAAGTATTTCCTGTCTTTGAGATTTGCTGGTAGGGCATACTTGCCTTAAGTTAAAGGGTCAGGTTTTCCTGTAAGCACTTGAGCTCTGTCACTATTTTGGGTAGTCA-CCTCTTCATACACATA------------------------------------------------------------------------------TCCTTAATCAGGAGCTGAAG--GAGTGAAG--------------------CTGTATTAGAATCTTTTCTTTGGCCAAATGAATGCTCCTGATGAATTTGCCTCCTTCTGTGATCATGCTGCAGGGCTTTTGATTAGACATTGTTATATGTAATCCACTCCCATATTAATAGGCGTTCCTCCAAGTGAGGACAAAATCTGGCTCATGGTGGATGATATCTCTGCTCCTGGGATCTCCTGGGGACAGGCTGGTGCTTTTAGAACTGCCTTGTGCCTTGATCTTAATTTATCTGTTGTATTCAATATCACTGGTAGCCGGGAAAAGGCCAAATACCTGACCTCCGTTCCAGGAC--TGATATTGCACCCACTCCAATCTTCCTTTGATCCTTGCTTTGGCAAGCCAAACAGGGGAACTCCTTAACT-TTCTTTGGCTCCTAAAAGTTCATCTGATTTTGTCAATTGGTGATATTTAGT--CTTAG------TTTGATTTGATTGCAGATTGGAGCATTGACAACCCACTAGAAAATAACTGATTAAACTGATGC--TTTGACAAGTGTCCATGTGAAGATAAGTTTTTCTCCCAGTAACTTCCTGACTGATGGAATTTTTTGAGAG-------------CTTCTTTGTTATTTCTGGTTATTTGAATTTTGACAGATGGACAAAGGCCACTATAGACAGCTAGCAGTATTCACAGTTAGTACAGTCCCACTCC--AAACAGACAACTGCTTGGTTCCATTAATTTTAGACTATTTATTTAGAACTATCTCAGATCTGATGAAATTATATTTACCTTTGTAGGAAGCAAAGAAAGTCGTTAATATTTATAACAATTTTCATGTAATGAAGAGAATTATTGACTTCCACAAAGGAATGCCaatagacttaaaaaaaaaaagagagagagaaacacagaaaaactCTCTGTATGAAGTGTTAATTGTGGGTTAGAAAGAGACAGGTTTTAGATAATTTCCATATGTGCAATATGACATATATTGTAAGCACAGGCCTTT

a score=51138
s chr3            99291635 1733 + 160039680 tggggttataggcacca----tcctgcctggctC-TTGGTTTTCTTCAGAAGAGTTGTAT-CTGGTATTCTGAG-GAACTTTAATTTCTGCTCTGGCATGAGAATGAAGACAGGTCCATTCTTATCAAGAAATGGATGTCAGATGCTCATTTAAAA-------CAGCAAGGACA-ATGAGAAGAAAAAGGATCTCGTGGGTCATAGATCTCAGGCCA--GCCCTTCACACAGGCTTCTCTGGG--AAACTGCCTCTGGGGCCTGCATCTGTGACTCCCTCTGTAACCAGGTCCTTTTACACTGTTTTTTGAAGTGTTCTTGATAAACACTTCAGTGGGACAATATATCTCTTTTCCTCAATTCACTTTGTTGAAGACCACAGATGAGACCATATTGTTAGAGCTTCTGCCTCCAGGATGCCTAAAGAACAGGTCATCTTCATGCC------TATGAGACTTG-----GATGTGTTCATCTTGAGTCCCTTCTCCTGAATCTTTATCCTGTTCCCTCCCAGGGAAG------------GACTTTCAGTGATGAAGTCATAGGTCTCAAGTCACAGAAAGAATCTCTCCTTCACAAACAAACTAGCGCACAGAGACCTTAATGACATGGGGGTAGGACTGTGAAGGGGACCTCTCAT----CCCTGAAGAGGAGCCGAGTGCTG--TGTTGTACCTGTAGCATTTTCTATTTATTCCTCCCAACCCACTCCTCTAAGTTATGACATGTAACTAGAGTTCTAT----------------------------------------------TAAGTAAAATACAGAGCATTTATTGTGT----------ACTCA---------TGATAC-AGGCCACTATTTCA--AGCTAGTTG-----TTAG--CAGATACTTTGAGTGCAGATATATCCTGAGCAC---AGATAAATAGACA------TCTTAGAGAATCTGGGCTGAATGGTGGGTAGGCTGTGTGTCAAATGAAAGAAATTTAAG----------------AGAGACTTGGAGAAACTCATGGAGAGATCCGGAGGCAGTCTAATTTATGGATCCTAAGTCCAGAGCATCTGT--TTTCTCCCCATCTCCTCCCACATCTCAGCTGTGGCAGTCTAGATCACTTTGAGCCATCAAGCCAGCACTGACAGAGGGACAGAAAGCATAGCAGTTGCTTCTGTTAGCCTCACACTTGAAGGCCTGGGCTAAGGGACTCTCACAGTCAGTTGGCTGCCAAGGCCTTTGGCTTTCTTAAATGACTTGAACACACACTGATGTTTCAAGGCTGGGTGCTCCCCAGCTGGAGCCCTGAGAATGCTTGCGTGGCAATCCCCAGAGAAGGAAACTC---------------CCACAAAGTAAATCATCAGGACCG-ATGGTTTCCATCCAAGAGCTGAGGAGGAAATGAAGTGTGAAATAGCATAGATTCTGACGAAGACATTAGTTCTCCATTAAAACCACAACTGTGTCAGAGCAGACGTTCGTTAACGTGATGACCTTATCACCAGAGAAGAAAGATTAGTGGCTTCTCAGAGGCCCCTGGAAAACCTGGACCACTTGGAAAGAGCAACACATGGTATGGACAATGACATCGTGGACTTTACTCTCTGAAAGCAGGTAAAAGGGACATTGTGTGAGCCCAGGT------GGTCTTCAGTAGAGACCTTAGAAAGACTGCCatagtgaacacctggcactaatgccgctcctctgtcctcctctgttcctgaaagacatcacgaatcaatctgttactctctcctttgatcttaaatttggcttcatgggtctcaattctgagcccccaactgccaccatcaatgagtagatgacttgtacca-----tggaaagcatttgtcttccc
s HiC_scaffold_1 109155350 1802 - 233722169 TGAGCTTGGAGAAACCAAGGCTGCTGTTTTGCTTATTGATCTTGGTGAGAGTCTTTGAATTCTAGCATTCTGAGTAAACCTTCATCTTAG----------AGAATGAAGGGAGGCACATCCTCTTCAGGACATGAATGTCAGATAATCATTTAAAAACACCACCAGCAAAACCACATAAGAAA-----------------TCATACAGCTCAGGCCAAAGTCACTCAGATATGCTTATCTTGGGCAAGCTGTGCCCGGC-CCTGCATTTGGGCCTTACTCTGGAATAATGTGCTCACATATTTTCTGTT--ATTCCTATTGG-AGATACTTTAATGGTCCGTCATGCCCCTTGTCCTTATTTAACTATGTTAAAGGCAAAAAATGAGACTACAACAGGTGGACTTCTGCCCCATGGATGTTTGAATAGGAGGCCATCTTCATGCCAGGTAGTCCTAGGCTTGCATTAGATGGCTTTCCCTTAAGTTACTCCTCCTCAGTCTTTCTTTTGTCCATTATGAGTGGAGAAGTCAGTTATGGGCTTGGCTTGATAAAGCCATAGGCCTTACATCAGCAGAGAAATCTTTCTTTCATAGTCAGACT--------TAGACCTTAA--------------GGTTGTGGA------CTGTCATTGTACATTGGAGAGCAGTCCTGTGAAAACTGTTGAAGttataacattttcttctttt-------------atcttatgAGTTATGCTATGTTGCcaaattttgatgtattttctgtatatctaTGATGCTTGGGGCTGGTTTCTGAAGCtatatgtataattatgtaattttataGTGCTAAGGGTCAAACTCAGCACCTTGATGacactaggcaagcattctaccacacAGTTGCACCTTTAGTTCAAGCATATTAAATATAGACATTTTCTGaggattttagagtgaaagttagGACTGTCTTGGAGAATCTGTGTTGGGTAGTAGTACTACTGTGGGTCCTGTAAAAGAAGTTTAAGGCAATATTTGCCATGAAATAGTTTTGAGAAACTCATTGAGAGATCTGGAACCACCCTGGGTTGTGGGATACAAGTTCAGAgagtctgtgttttctttctatcCTCTTCTGGTTTTCAGGGTT-----------CCCCATTGAACCACTGAGAC--TACTGACAGG----TAGGAAACA--GCAGCTGCTGCTGTTAGTCTCAGACTCAGATGCGTCGGCTGAAGGACTC--ACAGCCAGGTTTCTGCCAAGGCCTTTGCCTTTCTTGAATGACTTGATCACACACTGATGTTTCAAGGCTGGGTGCTCCCCAGCTGGAGCCCTGAAAATGCTTGCGTGGCA-TCACTAGAGAAGGAAACTCACTTGAAAGAAACTCCCACAAAGTAAATCACCAGGACCGGATGGTTTTCATCCAAGAGTTGGGGAGGAAATGAAGTGTGAAATAGCATAGATACTGATGAAGACATTAGTTCTCCATTAAAACCACAACTGTGTCAGAGTAGAAGTTTACTAACATGATGACCTTATTACTAGAAGAAAGAGATTAGTGGCCTTGCTCAGGCCTTTAGAAAACCTGGACCACTTGgaaagaataacataaaatatgGATGATGACATAATGAGCTTTATTTCCTCAAATCAAGGAAGAAGGAAATCATGACAGTTCATGCATGACAGCATTTTGGTAGAAACCTTAGAAATAATGTGATAGTGAATATATAACACATATGCTGTTAGTCTGTACTC-----TTCATAGTATACATCATTAATCAGTCTGGTATTCTTCTATCTAAGCTTGAATCGGGCTTCAT--TCCTGAGTTTTGTGCTTTCAAGTACTACTATAAA-------ATGACCATAATCAACTGTTAGAATATATTTACCTTCCC

a score=30321
s chr3            99293456 1391 + 160039680 AAAATCAGATTAAAGCAGAATGCACTTAGTGTCGTATGGA-ACAAGTTTGCACCATGGTTTCTCCAATGGGTCACCACTGGGGAG----------GTGATACAGGGGTCAATGGAGCAA----GTTGAGTGAGTCTATTGCTAGCAGCCCTGGCCTGTAGTCTCTAGTCTACCACAAGATACCTTGTGAC-TGGGTCACACCTTACAGAATTCA--GGCTTTGAGACGAAACACTGGGAGA---AGTTTGTCTAGAGCTTCGCTTCACCGAAGCAAATGCTTATCGTCTCCATTGTACAAACCAGGCAATAGCTATCTAGCAATAGGAAATGAAGCACTTCACACTGGGGAGTTGTGATGGGAAGGGGGAGTGAGCTGCATGAGCATGAGGAAGTAGGCAGAATCC----AGAGAACTGGAATCCCACTGAGCCACACTGCTCCCTCCCGAAGTCTCAATTTCTTCATCTCGAATGGACGAATGGACGTGGCGCTCAGTTTTAGCA--GTGTTTGAAGTTCATCAAGAGATTGCTGTGAGGGAAAAAGATTAGCTGTGATGTTGATAATGGGcatttgcaagtgcatttacagtttacaaagtgctt-catgtgcattattgtgctcttctggtgactcatcacattgggcatgtggcaatgt-----gggcactcctcacagctgggggcagagcactg--gccagggaaggtagcttccttcaggtgacatctttctgaagggaaggaacccgggctcactcttctgctttcagattcaaatccaaggttccttttcacAGGAAAATGATGAATAATTCAGAGTTGACTTGATTTATCATTCACTTTGATGACAGCAAAGCGTCTTCAGTGTCACCAGGTGGTAAAAATAGACCTTGAGCCACCAGGGCAAGGAGGTTCTCTGCAGTAGACAAATTGAGCTCACCACAGTGTCCTTTCCTCTGGCAGACTGGGCCACCACAGCCTTTAGGAAAGCCTTGGCATGGGCAGCCCCACCACCTGCTGTGCCTAGTT----------GCTGCTTCTCAGTGCCAGTGacacacacacacacacacacacacacacacacacacacacacacacacaGCCTCAGAGGATAT-GGGATAGGAG---TTTCTGAGGTTGTGGGGTCACCCACAGAGTCCAGAGAGCATATTTCTGGCCAAGGAACTG---TGTGTCTCTCTTTACAACAGCAAAGTTGGTGTGGTTTTGGCCAATGA-GAGTAAGAAACTAGTGAG-CACCGAGTTTCTGTGCCACTGATGCTT-TACTGAGACTTTGGGAAGAAGA----------GTGAGAAAGTATAACTACGGAGTCTAAAACGAAAAAGCCC--------CTGACTATACATAGCACATCTCCCTGACTTCCCTGAAGGATCTGACTTGTATGT---------------------------CAGAGGTATATGTGGTTACCATGAAGATGA
s HiC_scaffold_1 109158156 1367 - 233722169 aaaaaaaaagtaaaataaaatgcacttAGTGTGGGAGAAACACTAATTCA-ATTCTGATTTCTC-ATTCGGTCACC-CTGGGGAAACCAAGTACTGTGGTTCAGAGGTCAAAGAAACAGTGATGTGATGAGATCTTCTGGTTAGCAGACCTGGTTGCTGATCCTCAGTCCACCAAAATGTACCCTGTGACCTGGGTTGCATGTTGCA-AATTCATAGGTCATGGAATAAAACCCCGGGGAGGTCATTCTATCTAGATCTTTGTGACACAGGAACAAATGATTATCAcctccattttaaagatgagccAGTGGATTTTCAGCAAGAGGAAATGAAATAC---ACAATTTGAAGAAGACATGGA---GGAGAGTGA------------TGAG--AGCATCCAGGCTCCTAGTGAATAACT--ATTCTTATTTCATCACTTTGCtttt-----gagtctcagtttcctcatctctaatG----------TGCACTGCACAGAATTAGCACAGTATTTGGAACACATTGAGGAATTGCTGTGATTTAAAT-GATTATATGTAGTGCTGATAACTTACATTTGTAGGGCATTTTACAGTTTATAAAGTGCTTTCATTTGCACTATTTTATTCTGCTGGTGATTCCTCGAGCTGAGTAAGCAGCAGGATTCCTTATTTACTTTTCACAGATAGC-----AACTCTGAAGGCTTAAAAGGT--------TAAAGTTAGATTTCTCTGAAGAGTCAGAACCAGGG--------------TTAAAACTCTAAATacagttttttttccattttggaatGAAAAATAATGTAGAGTTGACTGTACTTGTTATCTACATTAGTGACAGCAGAACATCTTCAGTGTCACAGAGTGATAAAAATAGATGTTTCACTGTGAGGGCAAGGAGGTTCTCGGCAGTAAACAAACTGAGCTCACCAAAGTGTCCTTTCCTCTGTCAGACTAGGTTGCAGTGGCCTTTAGGGAAGCCTTGGCATGGACAGC----CTGCTTAATTTTTCCAGTTTCCCTGGGGAGTTGCCTCTTCATCCCAGTG----------------------------------CCAGACACGGGGTCCACCTCAGAGAACATGGGGAGAGGTGTTTTTTCTGAGG-TGTGGAG--ACCACCAGCACCT----AGCACATCTTTAGAAAAGGGGCTGGACTGTGTCTCTCC-----ACAACAAACTTACTGTACTTGGTACATATAAGGAGAAACAGCCTGGCAAGTCTTAGAGTTTATGtaccattgatttttattttgagacttggCTGAGAGGAGAGCAAGAATGTGAGAGAGTA-AATCAGAAAGAGTAAA--GGAAAAGTTCTATTGTTATTTATAATATGTAACATAATTCATTGATTTCCTCAAAAGA--TAGCTTGTactttactatatatatatatatatatatatatatatatatattcagttacCATAAAGATAA

a score=161187
s chr3            99294993 10527 + 160039680 [encoded data, 12023 characters]
s HiC_scaffold_1 109162818 10577 - 233722169 [encoded data, 12023 characters]

a score=11852
s chr3            99305561 457 + 160039680 CTCGTCACttttcagaatctagcacagtgtaaggcacacagtaaccactccatgaatGCACAGTTAATCAACATTAACTAGAAAACT--CTAATGGCCTGTATTCTGTTTCTAATTAT----------CTATGTGGTATGTAATCTCGGGCCACATGCTCACAGCTGCTAATT-------TGATCAACCTGTTTGAAATCTTTACTACTCACTGAATCTCTGCTCAGTCTTTTAATCCC----GTAATGTAAAGCCAGGCatttatttatttatttatttatatatatttatttTGCACTTG----CACTAATTGAGGCTTCCTGGGTATCCCTCCCATTGGAGAGGATTCTTATATTCTTCACATCATTAGAGATAGGAGAGATTCTAAAAGTTTCCAGTTTGGGCCTTTCGAGGGCATGACAGGGAACTAGATCCTTTGTGGTCAAATGACTTGGCCAAGGCTATGTGTTAATCCATTTGGT
s HiC_scaffold_1 109173971 463 - 233722169 CTTGGTATTTCCAAGaatttagcacagttctgggtacaTAACATGCTCTCAATTAACACATAGTTAATCAGCGTTAACTGGAAAACTTCCCAACATCTATGATTCTGTTTCTAATTCTAGATTAACTACTGTATGGTAACTAATCTAAAGCCATGTGCTCATAGGTActaattgatattttgattgaa--attgaaAACCCTTAACATTCATT-----------TAGCTCTTTAATTTCTGTGATAAAGTGAATCTGAGCTCTTTTCCCTCATTTAACTTGTGACTCCTAGTTTTAAATTCGATGCTTCTTATTGAATTTTTCTGGGCTTTCATTTAAACTGAGAGGATTCTTACATTCTTCAGGTCATCAGAAGCAGAAGCAATTCTAAAAGTCTTCAGTTTG---CTTCTTATTGCATGAAGAGGAAGGGGACCCTTAA-----GATTAATGTTTCTAAGGTTATTCATTAATCCATTtaat

a score=195636
s chr3            99307912 8559 + 160039680 [encoded data, 9452 characters]
s HiC_scaffold_1 109177544 8526 - 233722169 [encoded data, 9452 characters]

a score=11528
s chr3            99310351 567 + 160039680 TTTATCATCTCCATGAATGTAGAGAAACCAACAAATTCAATGAAACATCTGAAAACTATG--GATTAAATGAACCTGAATTCATGCTTGTTTTGTTTCCCTGATGGTACCCTTCTTGTCCTTTAACTCTTAGTAGTGATGGAAA---------TGCTTTTTGTGTAAAGCAACTTTGAAGGAGAATTATCTTCAATGCTATC----TCTTATTACTTGGATTTTGTTCTCCTCTTTTACGTTTTATGGTGTTGAAAGTTAAGGAAAACAAGGTAATTAAAGGAA--------------TTGTCTTTTGGTAGAGAGGCTGAACAGAGAGGCACAACATTACAACTACATTTTGCCTAGAATGTTTTTCCATTTGGGTTT-------TATGTGGTCATTGGGTCTATGTTTGCCACACAGTCTTGTTCCTGATACCATCC-CCCACATCATCACACTTTGGAGTTCAATATACTATCATACC------CCTAATCTTTCA------GTGTTTAATTTTGGGATTTCTT---TGTGTATGTTTTCACAAGATCCTCTTGATTATTGACAATAA-CAACATACTCCCTA---------GCAGTTTCTTCTTTAGGCATAATGAAAATCCATT
s HiC_scaffold_1 109179556 599 - 233722169 TTGATTGCCTACAAGCATGTGAAGAAACCTCCAAATACAGCAAGATATCACAAAAATGTGAGGTTAAAATGAACCTAGA------ATTATTTTAAACACC----------------ATCTTTAAAGTTTTAGTaataagaaaaaactcaaaagggcTTCACAGGTAGAGCAACTTTGAAGGAGAATTATTTTCAGTGCTAGCTCAttctttttgtttgggttttaatGTTCTCTTCTACATTTTGTGGTATT-AAGGCCTAGAAGAAAACAGTAATTCAAATAAgaggtttttacttttttatttttgacagaaTAGCTTAA-AGAGAGGCAAAATGTTATAACT--TTTTTGTTTATGA-GATTTTCCACTTGATTTTGGATTCACACTTTACTTTTGGGTCTGTGTATTCCAGTCATCGCTGTTGCTGACAGCATTCACTCATTTCTGCACTTCTGTGAGTTCAGTCCATTTAAACATCTATTTGCCTACTTTCTTGTCTCTTGTGACTCATTTCACAATTTCTTCCatacatttgttttcacagcttCACCTTGATAGTTG--AATAATTCACATATTTCCTACAAACACACACAGTTTATTCTTTACTTAT-ATCAAACTCCTTT

a score=42610
s chr3            99316902 2733 + 160039680 AGAGACCAGTCTTATAGCACACATGAAAC-AGTGATGACAGTGTGGTGATGACCAGTGACAGCCGGCATGGTCTACATTTAGCTCAGGAACAAGCTACTTCATCAAGAGCACC---------TCGTTCCTATGTTGTCTTTATGTCTCCCTGTGTTCGTGGCCTTTTCCACATCCTGGCAGGT----CTCATTGTGCAGGTTTGATTCTTGCTTTTTCTTGTATCTGAAGATTTCTGTGTATATCTCTCTTCCATGTG---ATCTCAAAGCCACCAGGCCTCTAAATTA--TAAGACACA-TGTCTTCCTTTCCAGACTCTG-----TGCACTTCCATGCAATCAACAGCCACA--CAGGGATCTTTGACATTTTGTTTCTGGTATATACACATTTATTCACTAA--GTAGATAGAGGGAAGTTATTAGGTCTAGTCTTTGTAGAGAAATAGAGCTGTCTAATGGAATAGTTAACATGACTGGTATTCTTGCCAAGAG---CTTTAGTTA-GGAGAAAACATAAATACAGAATGGCAATAGAGTTTGATAATCCAACAACAAACAGAGGGACAGAGAACTTCTGGATTTGTAGAATGAGAAAGCTTTCCTGGAAGTGT-TGATGCATTTTCTGAGATGGTGACACACA----TAGGAACCAGCCAGACTCACATAGAAGATAGGTGGAT-----------AGGAGACAGCAGAGGCAGCGATAAGGCATTACTTTCTTATTCTAAACATTACTCAGTTTGGCTTTTTGAAGAAGGTGGCTGAATGAATTTATAAATGATCTTACTTTATGAAGTTCTCTAGA------ATGTA----CATCAAACCATTTTTAT----------------------ATCATATTTTATATCACCAAATTATCCCATTAATAAAATAC------------------------------------------TTGGCAG--TG-------------------AGTGGATCCTTTGGTGAAACAAGATTTCAGTTTATTAAGCCTATGTATTAGCATTATTTCATTTGGGATTGAGTGGAAGCCAAATGACCTTACTATGCTACTGCATCTGATGCTCTTTGAACTAGATGCTCCATTTTGTGCTAAAAGCAATTTAG--AAAAC---CATTTGATAATTATCC----AGCACTTCCTCTGTACTAGCTAGCTGATGACGGTGGGGTTTTGTAATCTATGTCTCATG--TAGAAAGCTATCTCTAGCTTTCCTTGTCTA-CTGGTTAACATTCCTTAAAGGTTCCTTACTCTCTGAGGAGGTTAA-----------------------------------ACACTCTGACTGTCAGACAATGTTCCGAAGTTCGGATTTTCTTTGCAGATGCAACATTTTACATAAGGTAGGCGAAGGACCTGGATTTGCTTTGGGCACTATTTAAA--TTACTGAATACTTTAAAGCTTCTTGAATAGCAAGGTTGCAGAGGCCAGAGTGGGCTGCACAGAAAGCTTCAGTAA-----AGTTTT-CAAATTTTGACACAAGATATAGCAACAATATACACATGGCCTTTTGAAAAACTGG-CATCTGAGGTTCATTGTGTTCCATAAGAGAGGCACTATGAGTCCAATTACTGTTTTAAT------TAGGGTTCTCTTC------TTC----TGAAGGTAACGCTGTGGTAATGAGCATTTGAATTTCAGAA---AATT-------CATGGTAGAA-----AAATACAGAACATAGAACTCTTTCATCCAGGGTGAGTTTAGAGGCCACAGAGTGGCTATTGCAACCCACCTGGAAGCCAGAAACTTCCA--TTTAAAGG------GGGATTCAACACAGGTACCTGATATCTCTCT-CATTGCTCCATTTTCTCAAGTAGAAGTG-TCCACTGTCTGAGTACATTTCACTCAGAT-ATATTTTGTCTGCACATGGGCTGGGCTg-ggacaagtgg-tgtagttaagagctcgagattccatagc----aagtgcacttat-----ttaac-tatgatgggaacactggcgaactgtgtgaccttcaacaggtttcttaactcctttcaatttgtgcctactgcatctacaaatatgcctgcatcatggagttgtgtggggtaggtagag-agtgtatatgaatcagccaaca-------cTCCCATAT------------GGCTGCGTGTAGAAAGATATGGAGAAAGTGGGGGGTATTGGCAATTTTAAAGAATAAATTGCTCATTAGGGAAAAGTATATTGCTGGGAATTGGACAAGGTGCATTTGCTCATGAAGGGATTATGGTGAATAGGTCACTACTTTGATCTCT--GCCTTCGTGCAAAGTTGATGAATTCATGATGTGATGATGTTCCTAATGGATGGGTCACACTAGGTTCTTCTTGTCTTGAGATTGAACTAACAGCTTTTGCCTTTTTAACAAGTCTCCAGTTGCTGCATAAATCAACCAGAACGATTGTTTAATATTCCCTTTGGCTATGTAGATGTGATTTAATATCATACAGCACCTTCTAATAAAACAAAACAACCTTAGGTTTTTCCCATTGGGTGTCATGAAGTTTGCATCCTATAGATCAGGACCAGTTGGCTACATAGCAGTAATTTTCAGGCATTTCCTGAAGATTCTGGAGAACAGAAATTGTTCTTTTGTAAGATGTATCTTTCCATTGCTGTGTTCTTATTACTCTCTATGTTCGGTAATGAGAATAGTTAATATCTTCGGATGAAGCTTTTTATTATGAGTATTTTAAAGGAAATGGTTAAGATGCCAGAGTAGAGGAAAACCAG-----------TAGCATGTCTTCAGTGTGCTCAGAAACATGTCTGGAGTGAAGGAAGCCCAGTGGAAGAAACAGAACTTAGG------ATTATCAGGTCTTTCTAATAAAGAGCCATGTCctgtagcatagacagaaacagaccagacatttagaaggctggatcagagtcctacatct
s HiC_scaffold_1 109186065 2835 - 233722169 AGACAGTACTCTTACAGTACACGGGGCACTCGTGATGACAATATGATAATGCTTACTGACAGCTGGCACAGTCTACATTTAGATCAGAGACAAGATCTTTGATCAAGAGGACCAAACCTCCTCCTTTTCAAGTTTCTCTACACTTATATCTGTGATCATGGTCTCTGCCAAATACCGTCAAATGATCCTCATCATTTGGAATT--------CCTTTGTAAGTA-CTGAGG--TTTGATTCATACCTTCCCTCCACCAGTCTACATCAAAGTCATCAAGCCCTCAAACTATTTAAGGTTCACTACCTCCATTTACACTCTCAGATAAATTTATCTCCATGTGATCCGCAGCCACACTCTAAGATCTGTAAGATTTTCTGTACATAGTATGCTCATTCATTCTACAAATGTTGATAG---------ATACGTCCCAGTA---GTACAGAAATAGAGCTG----ATTAAAGagataaaatgattattttccttaagaaaggaaattttagttGCGTAAAAGACATATATACAGAATGATAATGCAGTGGATTAATTCAATgccatata--------------------atttttataat-------------tacatgTGTGTTATACATAT-------CGATCACATTCATCATTAGGAATTTG---AACCtgtacaaaatgtattttaattcttcttttcccgTCTGCTACCCAGCCTTCAGCTTGTCATCACCTCtcggtttt-----tttgtttgtttgtctgtt---------tggcTGGATGGTTTTACAA---ATCTCTTTTTATGGATTTCCCTAAACGTTGCATGTGAAGTCCTCAATCCCCTTTTATCATGCTGGGGTTAAAACCAAAGGCCTTgctgcatgttaggcaagtgttcAACCATTAAGACACATTCCCAGCTCCTGAAACCCAATTTAAGTTGTATCTTATCTTTTGGCAAATTGTCTTTAAAAAGGATCATGCAGTGAGTTCTTTTATGAAACAAA-----AGTTTAT----CTTAAAAATTAGTATAGTTTTACTGGGGCCTGTGT-GAAGCAAAATAAACTTG-TATACTTTT---CATAATACcttttg-------tgttc--ttttgtttttaaagcaattggggcaaaatatacatttattaattatttattgagcactttttATGTGCCAAGCAGGTAAAGCTGACTGA----TGTAATCTTTGGCTCATGTATAGAAAGC-ATGTTT--CTTTCATAGTGTGCCTAGATAACCTTCTTTACATGTTCCTTACTTTGGGAAGGATTTGATATATGACAAAGCCTTGTTCCAGTAAATGTTTAGTACTTTTTGGTAGCTATACAGTATTCACAACATCAGAGTTTCCTTGTGAATGCCATAGTTGATCTAAGGTA----AAGAGATTTAGTTTGCTTTGAATGGTATTTAAAATCTGTTAAACCATTTGAAACTCTGTAGGTGGTAAAACTGCAGAGGCCACTAAGGACTATATGAAAAACTTAAATGATCCTCATTTTTGCAAGCTCTAATACAACATGTATCAGAAATATAAATGCGGCATTTGGAACAACTGGAAATTTGCAACTGGCAGAGGCTCAAAACAGGACAAATCAGAGTCTCA--GCTGTTTGAATAACTGATGGGGCTTTCCTCAAGACTTTCCCAGCGAAGGC-ATAATGTAGTAATAAGTATTACAACTTTAGGACTTAATTTGCAGAACCTGCTAGAATTTTGAAATAT-GGACATAAGATCACTTCA-CAGAGGTCAGTCTAAAGGCCAGGAAAGCTGTTCTATAATTTAAACAGAACATTGAAGGTTACAACTTTGACAGTGGGAAAGGATCAGACATGGGTACCTGaaatccctttccctttctctatgTCCTC--GTAACAGTGTTTTATCATCTGAGTATATTCTATTCAGATAATATTTTGTTTACTTCTGGACTGGGATGAGGGCAGGAAGCTATACTTAAAATCATGAGATCTGGCAGCAGATAAGTCTCCTCATGGGTCTGAACTTCTGACCTTAACAGTGAAAAACTgtat------------gtttcttaatttttttcaaattgtg-ttACTTGGTTTGAAAGTGTGCCTGCCTCACATAGTTATGAGATCTAGATGAAGCAACATGCATAAATACACTGacaaaaattgttaccatattaaCAGTAGTCAGTCTACAT-TGGCCTGGCAGGTTTAAAGAGGAAGG----------TTTAAAGAATAAATTGTTCATTAAAAGAAATTG-ATTGTTGGGACTTGAAAGAGCTATGTTGGCCTTCAAATAGATAGTAATCAATACTTACCTACGTTGATCTCTCCGTTCTCATGTCACAATGGTGAATTCATGACATGCTAATGTTCAAAATAGAAGAGTCATATTCAATTCATCC--ATTTTAAATCAAGATAACAGC--------TTTTCACAAACCATCAATCGCTAGGTAA---------GATGATAGCTTAGAATTTCCACTGACTATGTAAATGTGATTAAATGTAATA-GGTGccttctaataaaaaaaaaaaac--tcagttctTTCCTCCAAGTATCTTGAAGTCTGCATCCTGTAAGTTTGAGCTA-----TTATGTCATAGTGCTTCTCAGACTTGTCCTAAAGATGCCAGAGAGCAGAAAATGTTCTTTTGT-GGCTATAT-TACCTATTGCTGTGTTTTTATTCCTCTTCATAGCCTGGAAtaataatggttaatattttATGGCAAAATTCTTTATGGCTTTCTTTCTAAAGAAA-----TAGCAGGTCTGAGTGAATGTAAAGAAGGTAAATGTTGATGGTAGGTGTTCAGTGTTCGTAGCAAGTTGTTTGGAG-GAACAtgacaaaggagagggaagaaaactgaaatgaaatgttCCCTACTCTTCTTAAGGAAAAGCGGCGTCCTTTATTATGAAC---AAGGGAGTAGACATTTGGAGACCTGGATTTGAGTCCTAAATTT

a score=31800
s chr3            99320980 2245 + 160039680 AAGCCTAGACACCATGAATTAGGATGAAGGATGCT---TCCATAATTTTAAAACATTTACATCTGACTGGTG-GCATGGATTTGGACATGTGTTTTACCAGGGACTACATCTCTAAGAGCATTAGCTATCATGACTTTGCTATTGATTTCTTTATACACCCATGACCCTGTTTCTTTCATGATGAAGTGTGAATTAAACATTCTCATGTTCATGCAGCATTT-ATGTATTCTTCCACC-TTTCCCTTCCGTCTTCATATTTGTCTTCCCAATGCACAGACTTTCAGAGTTCCTACCACACTGAAGTAATTATTGCTAATATTTGCTCTCAGAATGCCAACTTGGCAGGTCTGTGAGAGAG---AAAGTACACCGTGCCCAGAATCTCATCACAGAGAGTGTATGTTGGTGGACTGGGAATGAAGGTGACTGAATACTCTATCCATTTTCCGGGAAGATGCTGATACCAGCACATGCCTGTGGAGTTATCAGGAAGTTTCCATTGT--GGTCTTTGCCTTCTCTGAGGG-CAAAGGCTGCTGAAGCTTGGTTTTCTTTTCCAAGCAGAGAACTTGATTCCAAAAAGACACAGCCATGCTCTCCCCATGAAAC---AGCTTTCTTCTTGGTGAGATTTGGCTACACAGAGCAGGAAGGATGATTGAAAGCACTGCCAGATTGGTGGAAGAAAATTCAGCAGGA-CTCTGAGCCACTTCCTATTATCCCACA-CGCCCAGCCAGCTTTTCTCTAA-TTTGCAATTAGACCAATGCAGATATTAATTAGACCAATGCAGATATTTTTGAACCTATTAGTTCAAGTAGttttttttttttttggttgtttttttttcattcttttttAAAAGACAAtttatttttattttatatacattggtaatttcactgcatgtatgtctgtgtgagttgtcagatcccctggaacaggagttacagacagttgtgaggtgccatgtgggtgctgggaaatgaacccagatcttctggaagagtagccagtgctcttgaccacagagatatctatccaacccTTTTTCCCCCATTCTTGATTGAAATTTTTCTACTCTGTATGGTTAAAATATAAGTAAGAACAGCTAAGCGCTGAAATAAAGGGGTCACTTAGCCTGGATTCTCTCTGATTCTACCAGTCTTCAGGACTCATCTCCTC--ATGCTTGCGATACTCCTGTCCATGCTATAGATTGTGAGGTAGACTGA--AATTAACTGCCTTTGTGCTACCGGGAAAACAAAACAAACAAAACAAAAATGCAGAGGCAATGATCAAAATTTAACAGTGACAAAGCCCACAGA-CACTCCATTTTGTTCCTATCTTCAATACTTCTGACTGAACAA-----TGTGAAGGTTAGGAA---------------TACTTCTTTGATGGCCTTCACATTTTCTATGTCTTCTCCTTAGCATGGGCCAGTGTTTGAGCATGATTGCTCATGAACAA---GAAGGGTACAAAAAACTTGCTA-AGACCTTGTCTTAGCTGGAAAGACACTCATAATCTT----TGTGATGC--AGAAGTGAATGCAAGCAGATCTGAGGGTCGAGGAAGCGGTTGGTGAAGAATTGCTCAACCTTGTCTTTGCTTTGG-ATTGCTTATCT-TGGTTCCCACACAATCATCTGTTCATTCATTC------------------------------TTAACAGAAA-----------ACAAATGCATGACATTCTAGGTTCTCCTTAATGAAACAACTTAAAATTGGTGTGAACCCTACCTGTTACACAGG--GGAAGAAATGGTAAATATGGAAATAGGAAATATTTGGGTTAAGAGGAAAGGTGGGTT----AAGGGCATTTTAAGATGAAGATA---------CCA------ACAGAG-GCAGGGGAATTGTCTTCTGCACACAAACCGTTATATTGAGTTTTAGTATGAAGTCAACTC---------------------------TGTGAGGGCCTCTCAAGGGAAGGGCTTGAAGCCCAGCATCATAGACTGCAGCTCAGTTTGGCTGGAGCCTGTGGAATGTGCTAGCATTGAGCA------TGGGCTAG--GCCAGAGCCTGTTGGCCCTGTGC-AAGTCTGATCAAGGAAGTTGGATTGAATTCTGTACAGGGGTAGTCATTGAA-AAACTAGCACACTGTAGAAATGTGTAAATGCATATCAC---TGGAGTTGCTTAGA------------CTGGA-TAGGCGGTAGAAGGAAGGAGATCACTTCTAAGACCATTTAGAATAGTTTAGTCAAGA----------ACCTGGCCTGTGACTGGGAGGTGAGAAGACACATTCGAGTCTCACTGGTAAAACCA--TATGACCTGGAGTTGAAATTCA----CTCAAATGTTCTCTC
s HiC_scaffold_1 109191702 2115 - 233722169 aaactctAATGCCATGAGTTAAGATGGATAGTTCTGTATCTGTAATTCTAAGATATTTCTTTCTGCTCATAGTGTATGGAGCTGGATAGATTCTTTGCAAATGGCTGCATA------------------CACATTTCTCTTACCGTTTTCTTTATATATCTCTAGTTCTGATTCTTTAAATTTGAAGTATGAAaagagtgtttttattttcatggagCATTTCATGCTTTTCCCTAcccttttccattcctttctgtAACCATTGCTGCTTGGCATAGTCTCCCAGGGTTGCTAGCATActgaagttattattattattatttgttcttaGAATGCCAAGTTGGCAGTTCTATGGAAAAGTAAAAGGTACTCTATGCCCAGAATCTCATTGTGGAA--TGTAAGCTGGTAGAGTGGGAATAAAGGTGACTCACTTCTTTATGCTTTTTCTTGGAAGAAGCTGATGCCAATATGTGCTCATTGAATTAGAAGGAAATTTCCACTGCAAAGTCTTTGTCTTCTCTAAGGGAAAAAGACTGctaaacattgatt---tttttcaaataggaaaCTAGACTTCAAAGAGACGTAGCCCTGTTTTCCCCAGGTAACACAATCCTATTTCTTGATGAGAACTGGTTACATGAACCAGATAGGAAGTTTGAAACCACATCCAGGTATGCGGAAGCAAACCCAATAGAATTTCTGAACCACTCATTA-TATCCTACCTCACTGCACTAATTTTGCTCTAGCTTTCCAATTAAATAAGCatag--------------------------------------agttc--------------------------ttttttttcatACAGCCT--AAAGGc-----cttattgttttatattt--------tttccctg---------aTGAGAAACTTTTCA-------------AGAAGATAAGAATAATTA--------------------------------------------------AGGCAGTG---TTAATAAGAGAAGGCTCT-TTCAGCCTTCTTTT------------------------------------TTAGGACCTATAAAATCATACTTGAGT------------------------------------------------TATTCACATCTCATTTCCTTTGGAGCCTCTGCTATTTATGTCTGTGCTGTGCTTCGTGTGATGTACTCATTTATTAACTGCCTGTATGTTATCAGG------------------CAAAAATGC--CAGTGATGCTTAAAA-TTAATGGTTGCAA--TCCAGAAACCATGCTCTTTTGTACCAGTCTTCAGTAACTCAGACAAAACAAATCACTGTTAAGGTTATGAAAGTAAAGGAGTAAACAAACGGTTTTACAGCCTCTTCACGT----TGTCTTTTCATCATCACTGAGTGAGGTGTGAATATGACGGCCGCAGAATAGCTTTAGTTGCACAGGAAATTATCAAGAGACTTTATTCTGACTGCAAGTTTGCTTACGATTTTTGTCTGTAATACTTGCAAGTGAAGGCAAATAGA------AATCAAGAGAGACTTTCATGTGGAATGTCTAAATCTTTACTCGGCTTTGGAAATAATGACCTCTGGTTCCcacatattcattcattcattcattcattcattcattcattccctcGTTAATTTATTGAACAAATATCTATTGAATGCCAATTGAATGTCATAATAGATGCTGCCTATTGGACTA---TAAAA--GATATAGTTTTTCCCTGTAATCTGGGGAGggggaaaagacaaaagataaaatataggaT-TGCTCGTTAAGAGTAAAGATGGAATTAAAAAGGATACATTATAGAGACAATAAATGATTTTCTATTTGTTATAGAGAGTAGGAGAGTTGTCTCCTGGGGTATGACATTTAAACTGGTACTTGGGA-AAAGTCAGCTTTTGAAAGTAGTATAGCAGTAGAGCAAGTGGGAAGACCTGTGCTGGGGACAGCCTGGCACACACTAGCACTGGGAGCAACCTGGTTTGGCTGGTGCCTG-----TGTACCAGTGCAGAGGAGAGTGGTGGGTTGGGAGACTGGGCCAGTTGG-CGTGTGCTGACTCTG---TAGGAGCTTGGCTGGAATTCTGCACAGTGGTGGCCACTGAAGAGAATGTCATGATGCAGATATGTGTTAACAGAGATCACCTATGCTGTTGGGTAGAGAAGAAATCCCCTTGGAttagggaggagaggaaaggagatcaGTTCTAAGGTCATCTAGAATACTTT--CCAATAGATGATGGTGAACTGGTCTGAGGCCAGGA---AAGTGGAAATATTTTGTTCTAACTGGTAAAAATAATTGTGGAATAAGTTTGAAAATCAACtgctcaaatattttctc

a score=68437
s chr3            99323966 2491 + 160039680 ATTAAATTGT-ACACATCCTTCAAGGACTGCCTTTCCTACTATCCATCTCTAAGGGGAGGACTCAGAGTCTTTCAACTTGC--TGA-------CTCTTCTGAGTTTTTAGGCTAAGTTGCTTTTGCTGTGGATCTAATTATAATTTGTCTTA---TGTTGTTACCACTGCGCATGTCTGCCTTTAGTTCTTTTAGATTATAAACTTTTTGGAGAGCAAAGAGGTG------------------------------------------------------------ACACAGTCACATGCTGAGTGCCCACCAAGCCTGT-----CACCTGTGTCACCTGTCACCTTTAGCATACAAAAAATACTTGGTAAATAATGATCGTCAAAGCCACACTCTTCATAAATCTCTCTAAGCCTTCCATTAAAACTGTCGGAACATGTACAGGGGTGCTATTTTACCAACATCTT--TGGCCCCTTTCTATTAAATTTCCATACAAATCCTGTGGCCTGGGCT----------GTGGAAATCACATTCTCAGCTATTTCTCCCAGGC-CATGAACTAGAATGT---TATATTTACAGGGGTCTGTGGAGGTACCCCAAACACAGCAGTGCAACTGTATCTCAGAAACCACTATCATAAATGAGTTGGACAGGATAAGCCAACTTGAAAGAGAAAATAAAATATTATAACCCCAACTTGAAAAGAAAATATGGTGTGTGGTTTATTGCGGTGGGTTATGGGGGGAAGAAAGAACCGATTTTTAAGTCAAACACAGAAAAGCAGTGACACTCTTTAAATTCAATACAGTATTCACATGGCAGACACTGGACTTCAGAAAGCCAAACCTTTAGGCTCCTGCTCTGGTCTATAAAATAGATGTAAAATTGCCTT-------------TGCTACATTATTAGTGCACCATTCTAGAGACAAGGAATGTTTAGCGAGCAAAAGAACCTTGAAGCCAGTGTGGAGCTTTCAAGTT--AGTCTGTTTGTGGGAATCTCACATTGCATTTTAAAGACATTTTAAAGGCTCTGGCTTTGGGAAATTCCACTCTGACAAGGTGAGAAGGAAG---GACT-------GTCTGCAACAGAGGCACCAACTTTCATTGTCTTAGTGAGAATAGGTTTTGCTGTTAGCAGAAATCTGAGTCTTCCCTTAAACAATGAGATTTTTGAATTTCTAGACTTGCTTTACAC--AGAGTGCCTT-TTGTTCGTTTGAGCCCCCAGCCCTTCAGTTGTGTAATAACAAATTTGGAAGATGTGCCTTTTGCTACAGGGGACTTGGGGATTCTTGAATAAATCACTTATTTCTCTTTCTTTGAATCAACGCTATTGCAGAGTATGCAAACATTTTCTGGGAACTAGGAGCCAAGGGCCACCAATGAGAGATGGGAAAATTAATTTCATAAAACATTTTCATATTAAAGTGAAATTTCAAAATTTCAAATGAACTTGAAAACTCTGAGGGATCAGCAGATTGAAAGGCTCTATGTCTTTACCTTAGAGATTGTAGGAGAGCCAGATCTTGAAGGATGTGTATAAGTAAAATTTGAAAATATCATCTGGAAGCCTGAGGGTCTATGGCTTCAGTGGAGCAAGTCATTTACATCTGGTTCAGACACAAAGGTATCAAAATGCCTCCCGTGACCAAGGCTGGAAGCAGAAACACTAGGACTCATATGGAACCTGTTGTTTAGGCATTTTCTAGTCTAGAAGCGTGAGGATGATATATTCCGAGGTACTAGAATTTACTGGGACTAACATAGGATGCAATGGAGGGGTCTGAGGT-ACTAAGA---GGTGGTTAA---AAATGA---ACGGACTCTGAGGACCTGGCCAAGAGGTGTATGGGTGGCTTTCCCCACCCTG---------------CCCCTCTTTGCTCCTTCTGATTTGCTGACGAGTCTTGGAGACCAAATGAGATGCATTTCATGTGGCTCCGTTCAGTTTTATATTTAAGGAAACTCACC--------ACTTCTGGTGAAAAATGAGCAGCTTTTTGTGAAGTTTCTAA---AAGCATTTCAGGTCATTAAATGAACAATTTCTGGTTGCAGGAAAGGCACATATTATGCTGAATGGGAAG-TGCAGCCAATTATTTGGCTCCCATAGCCTGAAGCTGATTGTCTGTTGGT---AGTTTACTGGGCTGAATTGATGAATGTAAGCATCTCTCCATCACTCATTCATTTACGCAATGTACATTCAACAATTATTCCTG------------TGTGTCACCA---ACGGACCATACCA--------TTTTCTTTTACTGTGTTTGTCTACACACAAAGTTTGTTACT--------------------AGTAGAAGTGAGATTACAGTCACACACA-GGACAAACCCTGGATGTCAGAAGGAAGCGAGTTACACATCTGGGTGCCAGGCCTGAGCATTATGTCAAGCTGAAATTTAAATCTCTAGCTAAAAGGAAACGGAATAAAAACAACAGCTGTTATTAATAGAGTGAGTTTTTGTTAATTTTCTAAGAGTAACACGAAAGGAAATCAGCTAATATGAAAACAATTGATATTTATTTGTTTATTTCCAGATCACCAGATTAAAAATTGACCGAAACCCCTTTGCTAAAGGATTCAGAGATTCTGGCAGAAACAGGTAAGAATA
s HiC_scaffold_1 109195606 2308 - 233722169 attaaaatgtgaTGCATTCTTCAAAGCTCAGCTCAGCCAGTACC----TCTAATGTAAAATCTCAGAGCCCATCAACTTGTAGTGAGTGCACCTTCCTCTAAGTTCTCAGGGCACTTTGGCTTTGTTATAAACCTCATTGCCTTCTGTTTTAGAGTGTCATTGTTAGTGAAGATGTGTGCTTTT--TTCTTCTGGTCTATAAGCTTTCTGGGGG--Aaagtgatctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacgc-aatctCATACTGACTCTGTATGTACCCTTCTGTCACCTGTTATTATTAGCACATAAAAGATACTTAATAAATA----CAGGCACAACCACATTCTTCATAAAGCTCTCTAAGTCTCATATTAAAAGTCTTGAAACAAGTGTAGGTGTGTTATTTTTCCTAACACTTGATGGCATTTTTCTATTGAATTTCTATGCAGGCCCCTTGGCCTGGGCTCCAATGAGCAGTGGGAATTATATTTCCAACCATTTCTCCCAGGCTCATGAACTTGAATGTCATTATATTTACAAGGTTCTGTGAAGGCCcccaaaacaaggcagtgaaatcATATATCAGAAACCTCTATCATAAACGAATTGGACAGGATAAGCcaacttgaaagagaaaataaaatactataaccccgactttaaaagaaaatatggtgtGTGGTTTATTGCTGTGGATTATGGAGG-AAGAAAGAACTGATTTT-AAGTCAAACCCAGAAAAGCAGTGACACTCT--AAATTCAATACAGTATTCACATGGCAGACACCGGACGTTAGAAAGCCAAACTTTCAGGCTCCTGCTATGGTCTATAAAATAGATGTAAAATTGCTTTGGGTACACACTAGTGCTACATTATTAGTGCACAATTCTAGAGGCAAGAACTGTTTAGGGAGAAAAATAACCTTGATGCCAATGTGGCTCTTTAAAGTCAGAGTCTGCTTGTCAAAATCTCACATTGCAATTTAAAGAC-CTTTAAAGGCTGTGGCTTTGGGAAATTCCACTCTGACAGAGTGAGATAGAAGAGAGACTAAGAAGGATTTGATGCATAAAGAACAACTTTGGTTGTCTCAGTG---ATATGTTCTGCAGCTGTCAAAAATATGAAGATAGTGTTGAATAATGatgtttcaatttttctttaattatcttGCATTGAGAGTGTCTTAATGAGCTTCTTAGCCTCCA-CTCTTGAGTC--------------------------TCTATTGCT----TGAATGTAGTGACTCATTAACA-------------TCTTGTCCAGACACAAAG----------GTATCCAAACATTT---------------CCCATGACCAACACTGAAAG-----------------------------------------------------------------------------------------------------------------CAGAAACACTAGG------------------------------------------------------------------------------------------TGCATATGG---------------------------------------------------------------CATAT-------GTTGGTCAGGCTTGTTGCATTCCAGAGGCATGAGGGTAATATACACAACCAGGCTAGCGTTT-CTGGTAGTAAGATAGGATGCAATAGAGGGGGACAAATTCACTGAGATGGGGTAGTTAAACCAAGTGCTTTAAGAACTTAGACTACCTTGGCGA------TACAAGTGGATTCACCAGACTTGGTTAGCCTAAGAAGTTACctcttg--tttttctaatttgtttgC-AGCCTTAGAGACTGCATGAGATGTGGTGTATCCTGGCCTGTTCAGTCTCACATTTGCAGATAGATTTCTTTGGTAAAATCCTGGAAAAAGTCTAGCCATCTTATGT---GTTTTTAACATGAACATTTCAGGTTATTAAGTGAACAAATCCTGGTCACAAAAAAGGCAcaatataagtgaaataagaaattGTATTCAATT-TTTGGATGTTTCAGGCTGAGATAGATTGTCTGGTGGTCTGATTGCACCTTACTGAATTGAT---TGGATTCATTCATGCATTATTTACTCACTTGGTCCCCATTCATTCAGCAGGCATTCCTAAAATGCTTTCCTTGCACCACTGTATATGGATCTGACCATTTCCCAGTTTTCCATTTCAGTGTCTACGTAGGCAAATAATTTATCACCCATCTGGGACAAGGAAGGTGAGCAGAAGGGAGTTTACAGTTGCATTCAGGGACAGACTTCGGTTTTGAGAG------AAGTCACACATCTGTGTGCCAGGCCTAAGTCCTATATCAAGCTTCAATTTAAATATCGA-CTGAAAGGAAACTAAACAAAAGTAATATCTGTTAATAATAGAGTgag-ttttgttaattttctggGAGTATTACAGAAAG-AATCTGTTCATATAAAAGcaatttatgtttatttgtttgtttccagaTCACCAGATTAAAAATTGACCGAAACCCTTTTGCTAAAGGATTCAGAGACTCTGGGAGAAACAGGTAAGGATA

a score=6292
s chr3            99325442 114 + 160039680 CCTGAGGGTCTATGGCTTCAGTGGAGCAAGTCATTTACATCTGGTTCAGACACAAAGGTATCAAAATGCCTCCCGTGACCAAGGCTGGAAGCAGAAACACTAGGACTCATATGG
s HiC_scaffold_1 109196842 113 - 233722169 CTTGAGTCTCTATTGCTTGAATGTAGTGACTCATTAACATCTTGTCCAGACACAAAGGTATCCAAACATTTCCCATGACCAACACTGAAAGCAGAAACACTAGG-TGCATATGG

a score=9722
s chr3            99327727 596 + 160039680 GGAACATTG---TCTGCCATCATCAAATGTCTTCA-AGGCTGTACTGATTTTCTGGCTGATAA---TGCTTTCTTCT----AAATGCTTTCCTACATGAAATTA----AAATCTAT-----GGCA---------------AGTTTCCTAACTTGCTAGACATGCCCATGATTTCCAATTAGGCAG----TCTCATCAGATAC----AGGCAATAGAGACTGAGCGAGTGTGATGGGTATGTCTGGCATAGCACAGGCATTGCAATGCGATCGACTTTCAGCAGACATCAGACTTCTTTCATAATCTGCAAGGACTCTTTTACATCTGGACAACAGATTGTCAGGAATTATCTTTGGTATTCTCTCTACAGCAGTTTTTGGATAAATCAACAATTTATATTTAGAACTACTCCATGAAATATGTGATACATTATCCAATCAAGCACCACAGACCAGTGTTTCAGCAT-GAACAGACCCCATGCATGATGGCAGCTACATTACAGTTAAGGTGTGCAGAGGGCATATGTCTA--GATTTGAGGAAGGACATTCTATGATGTCTCCACAATGACTAATCTGACTAATGACATTCCCCACTGAGTTCT-AGAATGCTCCAT---CATTAACTGATACCTAGACCATATTA
s HiC_scaffold_1 109198269 598 - 233722169 GGATCATTGGTTCCTCCTGTCAGTGAGTGGTGTCAGAGAGTGAACTGCTTTTCTGGttgatgtcttttctttcttctctgtaaattcttcct------aaatcatcGTCAATCTGTTATGGGGCATTATGGGAGAACTGAAATATCCAAGAGAGCCAGATATGTTGAAGGTTACTATTCAAGCAGAGCATTTTGTCTTATGCCCTAACATAATGCCAAATCAACAAATGTGACACATATGTCT-------CAAAGTC----TAATGTTA-------------------AGGTATGTTTCATAATTTACCAGCATTCCTTTACATCTGGATGACAGATTGTCAGAAGTTACCTTTAGTATTGTCT-TACAAGATTTTCTGAATAAACTAAAACCTTATATTCAGAACCACTTTTTGAAGTACGCTGTATCTTACACAGTTAGGATCTGCACTGTGCTGTTGTGGTGGAGAGCAGACTGCAAGCATGACTGTGTATACCATACACCATAAGGATGTAGCGGGC-TGTACCAACTCATATGTGTAAGGGCACTGAATAATATCTACACAGTGACTAAATTACTCAATGACGCTT---------TTCTGAGAATGTGCCCTTGCCAATAAATGACACTT-GAATATATTA

a score=45343
s chr3            99330323 1576 + 160039680 AAGGATTGTTAGTAACTGTCTCAGCTATCTGCAAATGAGGACTTATCATTTG-GGAGCTCGTCCTTCAT---------------TTTTCAAA----CCTGCATCTTACAAA----GATTTTGAGGCATAACAGAGT-TAAGAGGATTTGCCACCATCCCAGAGCTAAGCTGGAATGCTGGTGAACACCCACACTTACCCAGTTTCCGAGGTATAGATCCCATGCCTTGT---GCTATCATCTTGTCCTTGACTGGTATACTTTCAACAGACCCTGAAGATAGAATCCTTCCTTGACATACATTGGCTAAATGCTGTTTTGTTTCAAATAAAGCCAC----------------------TTGTGAGCT--------TGCACCCATGTTTGTAGACTATTGTCCATAGTAGTCTTC-TCATTTACTTCATATACCCTATAAACAAGAATTCCCCAGCTGAGAACGGAAAACCAAGTTGAATGTTTCTGGCAGCTGAAGC----TGGGATGCACTCTCAG------TGTCTTACAATGGGGCAAGAGTGTGTGGCT------------------TCTCT----------------CTACATAACAATGGACTTGTTAAGGCAAGTATAAAGGTTTTGAATGTCTTTCCTCTTCCAAAAGTTCAAAAAAAATCACCTGATTATCATTAGCTGCTCAGTGATTTAATTTTCACTAGCTAACTACAGGATCTGATGTGGGCAAGGACTTTTGGTGTTATCATGTGTATGG-GAAAGATGGATTGGTGAGTGTATGGAGAGTGATTTGTGCATCTT---GGGCCTGGTGATTCTGAGCTAGCATCAGTACT-AGTGTATCATTTTCTGTCCAGCCTCTCCTCTGTGGCTCTTCTCATTCGAACACAGCTCTTACCAACCCCTATTCTTCCACATgcattttagacatcaaatgactcatgcggaggagcatggcttgatgaattgcatataaatgttactaaaacatacggattacatttcctttaaaaacacatgggcttaaaaattagaggggaaagtgcttggccaatgttttttggtttcgcagaacacaaaacatttgtggaatactttggagttacagaggttgccaaacctcaaaccaaaacacgttcaggtttgtcgatctcAATCCATCCCAGCACAGTCCAGAGGCTGGAGAAGGGAG------GAGATGAAAGATGGGAAGGA--TGCAAACACCCACTGTACACACTA-----CTCGTACCTCGGACAGTGTTCCTAGACCAGTGAGGCTCACACACTGACTCCCATCAGAGTGTGACCCATATGATAG-GTTTCCTCTGAAAT-----AAACAGCTCATTACAGAGCAAGGGCC--GAACTCTAGTTGCCATTCTTAGTGAacacgcacacacacacactcacacacacacacaTATATAGATAAGGGCTACTGGCTCGTAGATTTGCCCTTTTGCCCTTTTCTTCTGTTTCTTAGGAGATCTAGTGGATGATCTAATGACTGGGTCTGGAAGGAGGATCCACCAGGATCTGCTTGCATCCAGAGTGTGCATCTCAGGCT----TCCTGTTGGGTGGTAAGCCTAGCACAGGAGGCCTGTAGGGTTGAGAGTCAGCTTCTTTCAGGGAAGTTCTCACCCTCTCATTCAACCCTACACTTGTGCCACAATCTCCAGACAATCTT
s HiC_scaffold_1 109202342 1640 - 233722169 AAATACTGTTAGTAATTCCATCAGTTAATTATGAACGAATGTTTATTTTCCACTGGACCTGTGTTTCACCTgtgttttctataattttcaaAGTAACCCGTGTTTTACAAatgcagaaactgaggcaca-cagagcGTTAGCAGTTTTCCTACTGTCTCATGGTAATGTTGGAGGAGGTGTGAAACCCTAGCCCCACTGACTTT---------AAAACCTGAGCTCTGTCTTGCTAGCAATTTACACTTGAC-ATTTTATCTTCAGTAGTTATTGAGAACAGAATCCTTCCTCTATAAACTTT--TCACCTACTTTTAAAGCTCTACTTAAGTCACCCAGAACTGTTTCTTTTCCAAATTGTAACCTGTATCTTCTTAGCCTATCTTTATAGACAACTCCCCAT----GACTTCACCATCTACTCTGTAACCTCTGTAAGCAAGGATTCCCCAATAGAGATCAGAGAACCTTGCTGAACTTCTCTAACAGATGAAGAATGATATAATG-ACACTCAAGCCACATGTCTTACAGCGGTGCAAGAATG-ATGGTTAAACGCAAGAGCCATTTTTCTCTTCCAGCACCCCAGAAGCTATATTAAAATAAACTTGTTGGGGAAAGTGTGAACCTTccgctttctttttctttttaaaaaggtcaaAA----TTACCTGATAATCACTAGCTAGCTTGTGATTTAATTCTCACCAGCTGCCTGTAGCATCTGATGAGGGCAAGAATTCTTAGAGCCACTTTGCAGATGGAAAAAGATTGATGGGTGAAGatacagaaaattatttataCATCTTCTGGGAATTGATGGTTCATTGCCAGCATCAGGACTCAGTTTGCCATCTTCCAATCAGCACCTCATCTGCTGCCTGTCTTGTGCTAACAAAACTCTAATAAATCTAAGCTCCTCCCCCTGCATTTTAGACATCAAATGACTCATGCAGAAGAGCATGGCTTGATGAGTTGCATATAAATGTACCCAAAACATACGGattacatttcctttaaaaacacaTGGACTTAAAAATTAGGAGGGAAAGTGCTTGGTCAATGTTTTTTGGTTCTGCAGAACACAAAACATTTGTGGAATATTTTGGAATTATGATGTTTGCCAAACCTCAAACCAAAACATGTTCAGGTTTGTTGATCTCAATCCATCCCAGTGTGATCCAGAGCCTTGGGATGGGAGGAATATGAGAAGAAAGATGAGGAGGATGTGCATCCACCCACTTCACACTCTAGATGGCTCGT------GGGAGTCTTTCTGGACCTATGTATCTCTCATGCTTAATACCATCAAAATGTAACCCAC-TGACAGCATGTCCTCAGTAATGTGGAGAACAGTTCTTAAAGGAATTGTGGCTCAGGGTACCAGCTGCCattctt----------------catcttttcttatAAAGAGATTGCCAAGGAGAAGGGCT-CTGGCTTCCA-----GCCCTATTTCTCTCTTGTtcctctcttca--aaataaaagtgatg------TGATTGctttctgttggagcctcc-tgaaAATCTACGG------AGAGCACACATCCCAGCCTGTGCTTCTGAGGGATGATGCATCCAGCAGCAGAGACCTG--ATTTGGGGAGGTAGTTTGTTTCAGGGAAATTCTATCCAGTTCGTTGAGCCCCATTCCCGTGCCACTGTCTTCAGATAATTTT

a score=73355
s chr3            99331967 4807 + 160039680 [encoded data, 5657 characters]
s HiC_scaffold_1 109205011 5186 - 233722169 [encoded data, 5657 characters]

a score=92323
s chr3            99336760 4103 + 160039680 [encoded data, 4463 characters]
s HiC_scaffold_1 109210939 4050 - 233722169 [encoded data, 4463 characters]

a score=11001
s chr3            99343475 1003 + 160039680 atcacaCTTGGGGAAGGTGACTAAGA------------GCAGATAAATGGAAATCTAAGAATCCAGGTCTGTTATAGCCAAACATAATGCCATCCTGTCATTCTTTGATGG-ATGTT-TTAAATAAAATTTGTGACTTGCTTTCCCTAAATATGCAGTGGA----TTTTTATGACA-AAACTGA----ACTTTTATGAGGGGTGATCT-GAGTGATTGGAGAGCTGTTGTGCTGAAAGGAATGATCCCAGCTGCACCACAGTTAGTATTTTGTCTTCTGTGGAAACATGGGC--CTAGCATTTGAGAAGCTAGC--------------------AGACATCATTGTAGATCTCAACACCACTGGGTGTTTCAGTGTAACTCAGGCAACTAAAGTACTAGAATTATGGACAGTCCCTATTGTTGACTGGCTTTTCAGTCATTTGA----TTGTAGTTAGAAGCTGGCCAGTGAGAGAGATGATATACTTGACA-------------------CATCATGTGAATAACACATTG------------Agaggctggagagaaggcctatcagttaagaacatatgctgctcctgca----gaggatctgagcttggttc--------------------------------ccagctccatattgtgtggcccacaact-----ctctcaaacaccagctctgggagatctgactctggtttcaaagagcacttgcacacatgcaagcacatgcCCTATTCCATATATACACATAGTTCAAGACA-AAATATTAAAAAATATTG--TGAAACTAGAGAAACGTTCAGC---GAACATTAATGTTTGAATTGTGAAGTCATTGCAGGGATTCAAAGACGGCAGATTTACACAGCTCC-------------TTCTGAG---TAGCGGAATGATGCAAGT------------CCTCTTGTACAAAATATTAAAAGATATTGCATACAACTACTTTTA-------------GGTTATATGTGAAACAAAACAC-ACTTTCATGTTTTGAGGTTAGGATTCTATTCCTGGAATGTCTCAGAGGTGtatatataaatattctaaatatattttaaaaaCTGCAAATTCAGAAAACTTCTAGTTTCAAGAATCTCAGATCAAAGATATTCAACTTGTAATGGA
s HiC_scaffold_1 109217178 1122 - 233722169 ATTATGCTTGGGGAAGGAGACTGAGACAAtttagtcacatgaagaaaaagaaac--aagagcccAATTCTATTATTGCCAAG--TGCCGTTGTACAGTGTTGTTTTGATGGGATATTCTTGAATAAAATACACACTTCGGTTTCCCTATAGGTAAGACAGAGCTACTTGTATGACCCAAACTGAGAGCACATCTGAGATTAGTGGCTTCAAGTGATTTGACAACTGCTGTGCTGAAAGGAATG-TTCTGGGGATCTCAGAGCTGGCAATTTGT-------GGGAACAAGTACATCTGCCATTTCTGAAGCTCTCCCTTTTGATTAAGTGTCGTTGGACACCACTACAGATCTTAAAATCACTGGTTGTTTTAGAGTGTGCTAAGCAATTAATGTATTAGAATTATGGG----ATCTGTTGGTGATTGGGTTTCCATCAGTTTGACTTGTTTTAATTAGAAATGAGTCAGTGAAAGGGATCAGATGCTGGGCAAGGGATCCCTTTCACTGACTCTAATACTAATAAAAGATGACGTTATACTaataaaagatgaagaaagag-----CAATTGACTAGATAT-CAGCTTTTGAACTGTGAGGTCATTATAATGACTCAAAAATAGCCACTTTACACATTGAGATGAAGACTAATGCCGATCTGTTCAGCTTACAACTGAGTagtcacataaaatatttttgtagaatttCCTTTTTG-------------------ATATATAAACACAT---TGATTTCAGTTACACAGATGGCTTACACTATAAAAATGAGGAACTCCTGATGGAGTATGGAGAGCATTTCAGTTCAGTCTCCTAAAATCTGTATAGTTTGAGCATTGC---TATCCTAAAATCCAAAATCAGTGCAGCTCCAAGATTTAAAGCTTTTTGAGTGCTGATGAGATATTACAAGTGGAAAGACTTTGTTTCAAGCACAAAATTATTAAGAACAATGTATAAAATTACCATTAGTATATGTATATGGTCTATACATGAAACAATAAATGAATTTCAGGTTT--ATGCTTATATCATATCCCTAACATATCTCA-CCATGTAGgagtaaatattctaaa-atataaaaagtccTCAGAATCCTAAAAACTCTTGGTATCAAGGATTTTAAATAAGGGTTATTCAATTGgtaattga

a score=134839
s chr3            99345969 5633 + 160039680 [encoded data, 6144 characters]
s HiC_scaffold_1 109220814 5827 - 233722169 [encoded data, 6144 characters]

a score=148171
s chr3            99351588 3551 + 160039680 AGGAAGAGACTTTGATGGTGAGAATATAAGCAATGAATACC-AGAGATTTGTTCTAATTTTTTAAAAGT--ATGACTAAGACTACTTATGCAAAGAC------TACTGGTCTCATGCCATCCCTATCCTCTCCTTTGCAATGT--------GTGCTCAAACATGTGACATCATC------------TGATGTAAACAGAAGGAATTGAT-CTATAAAAAT------------------TTAGAACAT-----------------TTGCCTTAGACAGACTCATCTT-----AATCAATGGAATT-ATGTTTTCTTTTTCAGGGGGCAGTACAGGTACTTCTCCAACCACCTCCAGCACTGGGACACCATCCCCTTCGGCTTCTTCTCATCTCTTATCTCCATCTTGTTCTCCTCCAACTTTTCATTTGGCCCCGAATACTTTCAATGTGGGCTGTCGAGAAAGCCAGCTGTGTAATCTAAACCTCTCTGATTATCCACCATGTGCCCGAAGCAACATGGCTGCCTTACAGAGCTATCCAGGGCTGAGTGACAGTGGCTACAACCGGCTCCAGAGTGGCACAGCTTCAGCCACTCAGCCCTCTGAAACCTTCATGCCTCAGAGGACTCCATCTCTGATCTCAGGAATACCAACACCTCCCTCGTTGCCCAGCAACAGCAAGATGGAAGCCTATGGTGGCCAGTTGGGGTCCTTCCCCACTTCCCAGTTTCAGTATGTCATGCAGGCAGGCAATGCAGCCTCCAGTTCCTCATCGCCACACATGTTTGGTGGCAGCCACATGCAGCAGAGCTCCTATAATGCCTTCTCCCTCCATAATCCCTACAATCTGTATGGATACAATTTCCCCACTTCCCCCAGGCTAGCTGCAAGCCCAGAGAAACTGAGCGCGTCTCAAAGCACTTTACTCTGTTCTTCTCCTTCTAATGGGGCCTTTGGAGAGAGGCAGTACCTGCCTACAGGGATGGAGCATAGCATGCACATGATCAGCCCTTCAACTAATAATCAGCAGGCTACCAACACCTGTGATGGCCGACAGTATGGGGCAGTCCCAGGCTCTGCCTCTCAGATGTCCGTACACATGGTTTAAAGAGCAGTGCACACACTATCGAGGTGATGGCGGCCAAGACTCCAGAATCTCTGTGGGTGGATCATCCTCCTTGGGAGGCATGTGCCTTGGGAAAATAGGAATTGtgtgtttgtttttgtttttgtttttgtttttTTCTGGATAAGGAAAACAGAGAACAACAATAGATA-------CCGCTGAAGGATCCTTGGAGTCCATCATCCATATCTCAGTGGTCATTCTTCTGCCTTCCAAAATCTTAGTTTTATAAAAGCATTGTGTATGACAGAGTGGCC-TTGAAGAGACTGAATAATCATTTTATAATAATGTTGAAGGAAATGCTAGCATGTAGCAGCCAAGACAAGTTTTacacacacacacacacacacacacacacacacacacacCCCTTACATGAATATAGTCATGTACACACACGCATACAAAAAGTAATACAAACACAAACATCATACACACTGACTCTGAACTGGGTGAACTCTGTGAAGGGAGGCCCAGAATGGGTGCTTTCACCAAAAAATTTGCCCGTTTACAATCCTAGACGGACTGGGCCATCATTAGCTAATAGCCTTTCTCCCTTGCCA-------TGTTTCTGGAATGAACCGTG-TACCTAGAACCTCTCCTTGCCACAGAGA-TGGAAAGGCATCAGTGCTACACCTGGACTTGGCTTCCTGAGAAAGATTGTTTTTTAACCTTTGGCTTTCTTCATTCAGTGTGCCATCTTTGATCTTA-CAGCGGTGCCTGTGGAAGGACAGGGTGAGAAAAGCTCGGAGAGAGAAAGAATCGAGGGCAGGAGAGAGTGGACAGCAAGACTG----AGAAGATGTGAACAA--ATGAGATTTAATCCACCAAGGAGAATTGGTTGGGTTTGTTT----AGCCTCTAAAGTTATAGAAAGAATGATGGTGGTAGTGGAGAGTAAGCCTCTTTGGGACCCTGCTTAGAGTCAAGGGTACCAATGAGAAGGGCTAGGACAAGGAATGCTTCTTGATTCCATAGCTCTGACTATAATGACCCAGGAGAGAGGTGCCCCTTGTGG-GAGTTCCATTCT-GTGGCATGCAACTGAGCAGGGTTAGGGAAACAGGTGTCAAGAATGAAGAGAATGGTTTTATCTCCAAGGTGATACCAAAAACGAGTCATGGACGAC--AGGCCTGGCCTC-ACACGCCAGATCCAAAATGTTGACCTGGACAATCTGTCCCTGGTGCCCAT----GCAGGAGAAACCCTGAGACACAGAAGAGAATTGCA---GGGTCTTCTGCCCCTTTTCTATCTGCCTGTAGCTCTCCATTTTGATTAAATAGTTCATTGCATTCTGAAGTTTGGGGATGTTTTT--TCTTTCCTTTTCTTTTCAAATCCTTTAATGATAGGAAGACAAGTGAAACTGGGTGCAAGCTAAAATTTTTAAATGGTGTGGAGACTCGAATGATACC----AAGATAATACAGATATTATTAAGAATTTTTTTGTGTTGAGGTGATGTAGATAAATGTATTTATATGCCTAGTTGGATATTCAATATTATGAATATTAAAAAGGGGGCAATAAAAGGGTATGTAAAATATGTATGAAGAAAAGGTGTATAAAAATTTGCCCTTATGCACGGAACTGTTTCTGAGTGCCAAGCACAGAAAGCCGCTAAATAAAATCTTTGCAATTGTTTTCTGTGTGTTTGTTCATATAGAAAAattaagtattgtt-----------ttctgtcttacaataagtcaaacactttcacatgtattatcctacgtga-attttatgcag---ataac---------------ataaagtcaccatt-------------------------------atccttgttttac-gaaaatagctgagctactcaaaaattggatgaattattcaggaccacacaAGCCGTCCTAGAGGGAACTAAGACCGGGAGCTAG--CTTTCATATTTAACAGGATGTTTACTCGCATATTAGCTGCACAAATATGGTCTAATAGCAACCTTTAAGGttgttgtatgccag-taccctactatttct---------aataatccattgtcctacagttctgagagatgggtgtgattttcataaaaatatttgtaggtctggaagaagttttatagaatgccaaatacttggccaaggtcctcaggtagctagtgatagaactggtatact-aatttaatgtctgtgcaattagcactgtgcccttattccagtgc----actgtac---------------cgttcGGAGGGTAAGAAACAGAGGTATATTTTGAAAGATTGAGGCATGAATGA--CTGAGG-------------CTTATGTATTTGATAATAAATTTATACTCCTCTTTGAAGCATGAC-----AAGGGTAGTTTTGATCTGGTATTCAAAAGTTAACTGT---ATAAAAACCAGTGAAGAGTGAGGGCCATGCTATTTCTAAGCACATCTGCA---TACTTCAGGCAAGCCCAGCAATGCCCATAAAAGGTGGATAGGGGAGAAATTTTTGACTGTTTAAGTGGAGAGAAGTAGGACCATGAAT----TGTGCTTCCAGCACTGCTTATGTGATTGGGGAAGAGCAGAGCAGGAACACAAAACCCTCCCAT---ACACCTATACTGCATTATATCCTGTTGGATAGGTACA
s HiC_scaffold_1 109228616 3652 - 233722169 AAAAAGTGAATTTGATGGTGAGATAAGGCAAAGTGATTATTGAAAGacctattataatttttaaaaaatgaattaccaaagtt-ttTATAGAAAAACAGAGTTTAGTGTTTTTGTGTCAGCTTTGTCTCCTCTTTGGTaatgtttatatatgtacatacacaaatcaaatcattagcataatgttttgagttaaaaagaaaataatgattctGTAAGAATCAATCCTTCTTGGCCATTTGAAAGCATCTTCTGTATGGCTTGCATTGGCCTAGACAAAGCCATGTTCCGATACCTAATAgtattcatatttcatttttcaggggGCAGCACAGGCACTTCTCCAACCACCTCCAGCACTGGGACACCATCTCCTTCAGCTTCTTCTCATCTTTTGTCTCCATCCTGTTCTCCTCCAACTTTCCATTTGGCCCCCAACACTTTCAATGTGGGCTGTCGAGAAAGCCAGCTGTGTAACCTAAACCTCTCTGATTATCCACCCTGTGCCCGAAGCAACATGGCTGCCTTGCAGAGCTATCCAGGGCTGAGTGACAGTGGCTACAACAGGCTCCAGAGTGGCACTGCTTCAGCGGCTCAGCCCTCTGAAACCTTCATGCCTCAGAGGACTCCATCCCTGATCTCAGGAATACCAACTCCTCCCTCGTTGCCCAGCAACAGCAAGATGGAAGCCTATGGTGGCCAGTTGGGGTCCTTCCCCACTTCCCAGTTTCAGTATGTCATGCAGGCAGGCAATGCCGCCTCCAGTTCTTCATCACCACACATGTTTGGGGGCAGCCACATGCAGCAGAGCTCCTACAATGCCTTCTCCCTCCACAACCCCTACAACCTGTATGGATACAATTTCCCCACCTCCCCCAGGTTAGCTGCAAGCCCAGAAAAACTGAGCGCATCTCAAAGCACTTTACTCTGTTCTTCTCCTTCCAATGGGGCCTTTGGTGAGAGGCAGTACCTGCCTACAGGGATGGAGCACAGCATGCACATGATTAGCCCTTCGCCTAATAATCAGCAGGCAACCAACACTTGTGATGGTCGGCAATATGGGGCAGTCCCAGGTTCTTCCTCCCAGATGTCTGTACACATGGTTTAAAGGGCAATTCAAACCCCACAGAGCCTATGGCTGTCAAGACT-CAGAGTCTCCATAGGTGAGTCCTCCTTTTTGGGAACCCAGTGCCTTTGGGAAACA-GAACTGCAT-----TTTTTGTTT--------------------AGAAGAGAAACATATA--AACAAGAGACACTTTTAGCCACTGAAGGATACTTGCAGTGAATCCTCCACAACTCAGTGG-------CCTGCCTTTTTAAACCTTAGTTTTATAAAC-CATTGTCTATGCCAGACTGGCCTTTGAAAAGACTGAATAATCATTTTATAAT---------GGAGATGTGAGTGTGAAGCAGCTATGAAAGGTAATAAACACACGTGTGCAGACCTACCGATACACACCTGCAC---------------------ATATACACAATTCTACATAAACCCATACATATACAAACATCCTGCACACTGACTCTGAACAGGGTGAACTCTGCAGAGGGAGGCCCAGAAC-GGTGCTTTCATCAAA----------------------------ACTAGGCCAGCAGTAGCCACCAGCTTTTTTCTGCTGCAGCTTATGCTGTTTCTGGAATGAACCACATTCCCTGGAGCTGCTCTCTACCAGTGAGGTTGGAAAGACAACAGTACTACAACTGGACTTGGCTTCCTAAAAACAATTG-CTTTTAAACTTTGACTCACTTCACTCAGTGTGCTGTCATTGGTATTCTCAGTGGTGCCTGTGAAAAGGAGAGAGgctaaaggaaacagaagagaaataacaGAGAGCA-GAAAACGTGGAGAGGAAGACTGAGGAAGAAAGTGTGAGCCACGAGGAGTTTTAATTTACCAAGGAAatgtgttttggtttattttcccAAACTTGCAGGTTGTAGAAAGAATCATGGAGTTACTGAGAATAAAATCTCTCTGGGACACTGTGCATGGTC-AGGGCACTTGTGCAAGAGGTTGGGACAAGGAATGTATCTTGATCTCATAGCTCT-ACTGTGA----CCAGAAAAGAGTTGCATCGCGTGGAAAGTGCCAGCCTCACAACAAGCAGCATGGCAGGGGGAAGGACAGGGAAGTACAGAGATAGAAGAAT-TTTATACCCTCAAGATGTTACCAAGGAC-AGAGGAAGCCGATAGAGGGCTGGCCTCAACATGCCAGATCCAGACCCCTGACTGGGACTGCCT---CCTGCCACCCTCTGTGGCTGGAGAAAAACTGTCGCGGTCCAGGGAATTGCAGGCGGGTCTTCTATACATTTT-TACCTGCCCATAGGTCTCCATCAATATCAAATAGTTCACT-CATTTTGAAGTTTGGGTTTTTCCttcatctttccttttccctttaagTCCTTTAATGATAAGAAAACAAGTGAAGCTTGGTGcgaagttaaatttttaaatggtgtGGAAATGCAAATAATACCAAGTAAGATAATGCagat----ttaaga--tttttgtttttgaggtgttGTAGATAAGTGTATTTATATGCCTAGTGGGGAGTCcaatattttgaatattgaaAAGGGGGCAATAAAAGGGTGTGTAAAATATGTATGAAGTAAAGGTGTATAAAAATTTGCCCTTATGCACGGAACTGTTTCTAAGTGCCAAGCACAGAAAGCCGCTAAATAAAATCTTTGCAATTGTTTTCTG-GTGTTTGTTCATACAG---AATTAAACAGACTTGCACATCCACGTTCTGCCTTACAATAAGCACAACACTTTCACTCACACTGTTCTATGCGATCTTCCACGCAGTAAATAACTGTTACCATGAAGTAATGAAGTAACCATTGCCATGAAGCAGCCATGAAGTAAACATTACCGTCCTCATTTAACAGTTAGTAATTGAGCTACAGACAGACTAAGTGTATTGTCCAGAATGGTATAAGTGAGC--AGAGGGAACTAGGACTTGAAGTCAGGTCTTCtgatattaacaaaatatttgcttttgtcTGAGCTGCAGAAAC-TTGTGTAATAGCTCTCCTCGTCCTTGTTACGTAGAAGATACTAAGCCATGTTTTTTTGTGTGACCAATTCACT-TTCAACAATTCTGTTAGATAGCcattattttaataatcat-ttaataGATCTGGAAGCAAGTTTATAAAAGATTAAATACTTGCCAGTGGTTCTCAGAGAGTGAGTGATGAATCTGGTGTTCTGAGCTTTGAGTTTGTGGAGTTAGTACCGTATCATCCTGCCAGAGCTCCAACAGTCCCTGGAAGCACATGGGCAAtcagaaaaacagacaaacaaacacatTGTAAGAGACGTAGGCAAGAATGCATCTGAGGACAGATTTTGCTTCTTATG--TTTAATTGCAAGTGTACACTCTCCCCAAATGCATCGCTGTGGGATGGAAGCTGTCATGTACCGAGTGACAGTTGGTAGTAAAATAACAAACAGCTTAGAATATGCAC--TTTTATTGGAAAGCACTTAGACATGTTACCTAATTTCAATCTCACTATAGTCATGCATGGTAGACAGGGCAGAAATGT-----TGCTTGTAAATAGGTAAGTAGGATTATAAAGCTAATGATCTTCC-------CATAGGTGTTTGGGAAGCAGCAGAACTGGGACATGAAATCTCCTCTTCCAACCCTTATTTCAGATCATTTACTGCTAAACAGACACA

a score=49801
s chr3            99372002 2743 + 160039680 ATTTCTATGTT--GGAAGATGTCAGTTTGGTCAAGGAGTTAAAATGT-CATATGAAAGTGAAAAAGACATG--------------------TTAAGTTAGTGATAAAGAGCATGCACGCTGTTGACGTTCAGGGGaaaactaatttttatagagtgtttattacctgttattctttatgcaaggcaatatcctcgaatccttg---taaccacccttaagagttgtctttattttatagttgcagaaactgaaactcacacaa-----------------aatgacaaaacttgtaagaaacaaagatgggattccaactcaggcctgGACC-----------------AAGTG----TTATAGGGAATAAAATAAATAAGGCT----TTATGGGAAAGAT--ACCTTGACTTTTACTTTGAAAAATTTATGAA---TGGTAAAATTGGAGAGAAA-----ATGTTTCTTTGGAGATTGGTAGCATAGTGAAGACAAA------TGGTGAGATGAATGGGCTCTGGTTGAGGGA--------GAAGATGGCCACCCCAGCAAGTCAAAGTTAATCATGTTCGCCCTGCCTTTGC-------ATAACTCTGGGTTCCTTTTTCCTACATGAGGTATCTTGGCTGTGCAACTTG-GGAAGTTCAGAATTTCATTCCATGTCTGAGTGGAAACCTCAACCTTGAAAAGACTTGCGGTGTCTGGGAGGCGATGGAGGAGTCAAGCTATGTCTCTAA-----CACCTCCACCCATTCCCCTCGCCAGGGCCCCAGGGAGCGTTCAGCCTCCACACTCCCTGAGTCAGGCCC---------CTTGCTTTCTCCAGCCA--------------CGTGGGATGGTGAAAGGGG-ACTTTGCTGCTGAATGCCAAGAAAACATTCATCATATTTTCCTTCTGAGCTCACTTTACAACCCATTGCACTCATCTTTTATGGGTGAGCCCAGCGGCTTTTCGCCCTTCGGATGCTTCCTTCTCACACATT-TGCTTTTA-TGGACTCTGCTGCAAGCCCTGCCCAGGCACAGAAAACCAAAGGTG-GGTGAATCA-TATTAGCATTATTTTCACTCCGTGAAACCAGACTGGATA---TGGGACTGGAAAAGGGTTTCCATGGCAACCTCGAATGGTTCTCATTTAATGGGGGCC--TTTGGTACTCCATGACAAAATTAATGTAGTCCTCCCCCTC-TTTTACAA---TGTACATTCATCCCCAACTC--------------------TCTTAAACTCTC---------TGTAATGAATGAAATTTCATATCTTATCCTAGCAATGTTGATTTGTCATCCTTCCATCACTCCATCATGGGGTTTCTGAGTAGAAG--------------AGTGATTCTAGAAATCAGGCATTTTGCATTTCATATAGCTCCACTATCTTCAACACAATGGTAAGTCTACCTTCAGCTGACAGAGAATGAATGACTTCCTTGTTTGAGAATGAAAATATTTTTTCTATTTGTTCATATTAGTAGAAACCAATAACTATAGGAAGATAGTTTGATACTCTCTAAAGCTGGGGTCATGTTTATAAGCC--ATATAGAA-TGGGTACATGACTTGTTCTCTGTTCCAATGATTAAGATTCAAATGATCACTCTCAACTGAAAAGGAAGGGAAAATGTAG----CCTGAATGTCCAGGAGAAAAGAAACATATCTGATAGACATCAGGGTGAGTTTAGGAGATTCTCAGTCAATCTTTCTTGAGTCAACTTAATCTGATATTCCTATCAtactaggagataaagataagtc-----tatg--------------------------------caagagcagcaaggactctcaacatctgaatcatc-----------------------------tcaccagtctc--------------AAATTTGATAtaataatagt-----------agtagtagtagt-----aataatag-taATTATTCTATTTTATTT---------------------------ATGTG---------------------------------------------------------------------TGAGAGATACC--------AATGCTGAGAAGCTAACAGTCTTGTTGAACATTTGATT-----TAGAACTTGCACTGCTAATTTATATGAGATTGCTTTGCTTAGGCAAAGCAATGGCAGCACTACAGGCATGTTATATTATGTACCTT--AAAGACTTTAGTGTAACAGGAATTACCTCTCATTCAATTACATCCAGAAACAGACCAATAATGAAATCCATGTGGTTGTCAGCTCTAGGGTATCAGGATCACGCTCTATACTGACTGTCATTTTATCTGGCCTTA-GATGACACTTGATATTCAAAAGCAGTAGTGTGGAAAGATACCCAAGTACTATACTCCTCATTGCCCAAAGATCCAATCTGTTTGGCAGTCACATTCCTAAATGGCTTCTAAAACGACTTTCTGGAATTGGGTTTTCTCAAATCTTGTGACAGTGCTCCAGCCTGTGGCTCAGAAGTTCCTCAGACTGAAGACACACAGAGTCAGGAAC-CTGACTGTAAACCAGCACTTCAGAGATTCTCATCAATTAGTCAGTTTTCCAGGAGAAAATTAGTCTTCCTTTCCCTCGAAGGATTCACAGGAGCAGATAGGTACACTAACCCACAATGCATTTTCTATACCCACAGATGGCT-ATGCAAGGAGAGTTTCACTTTTCTTCAGT---TCCCTTTCTTTAATGCTGGTTCTGTATCTTCGTGACATTTGGCTTACATAGCCTTCTCATTAAAGTTCCCCAAACCTCACCTGAATAAATGGCTCATTCTCCTTAATCATGATTTGAGAAGGACC---TCCCTTCACT------ATTTAGAG--TAAGGTCCTGATAAAATAATCATGGAAAAAGACAGAAGGTTTAGAGT------------------TTCTGAAAGCAC-AGGATTCAATATTCTCTTGAGAATCTTCTTAAAGACATTCTGGGTTGTGTGACTGAGCAGAACTGT-CTCATACAAAGTGTCAAT-TTGAGAGTAGCAAAGATAATCTCTGGGGCTCT--GTCCACATCTAAGACAGACTCATGCTTGG
s HiC_scaffold_1 109242819 2975 - 233722169 ATTTTTACTTTAAGTGAGATTTTGGTATGCTGAAGAAATCAAGACATATACATAAGaatgaacaataaataaataatactttaataAGGTATTAAATTTGTGGTAGAGACCATATATGCTGGGGAATTTCAGGAGGAAACTaatttttattg--tgttcattACATGTTACACATTATGCAAGCCATTATCCTATAATCCCTGAAGgaattatatttcaa-----tttctattttatagGTGAGAAAACTGAAACTCACACAAGTTAGCAACGTACACAAAATCACAGAACTTGTAAATAATAAAGTCAGGTCTCCAACTCAGGCCTTTGCCCTACTACAGTTTTCCACAAATGAGATTGATAGGgactaaaataaaaagtgatcAGTTCATGGAGAAGGTTGAACTTGAATTGTACTCTGAAGGATTTGTGGAAACTGCATAAACTGAGGAGAAATGAGTGTGTTCCATCTGAG-------GAACTGTAAGGACATACATCTTTGCATGTATCAGTGCACTGTGACAGTGGGGCAGTGACTGAAGATGTTCACTGCGCTAAGTCACATCTCATCACTTTCTTCCTGCTGCTCCTGGCACTATGACTCTGGCTTCTCTTATGCTGTGTGAGATATGCTAGGTATATAACGCATAAAAGTTCAGGGTCTTCTCTTATATCTCACTGAGAACTTCATTTCAGAAAGGATCAGTGG-GACTGGGAGATGTAGGAGGAGTCAAGCTACATCCCCACAGTGTCATTCTCCTCTCTGCTCCCAGCCAGGGCTCCAGGAGTAGCTCAGTGGCCACACTCCCTGAG-CGGGCTCTACAGAGATCTTGCTTTCTCTGGCCAGGCATGCATTGCCAAGTGGAACGGTGGAAGGGGGACCTTCCTGGTTAAAACCGAGAAAACATTCGTCATGTTTTCCTTCTTAGCTCATTTTACTGCCTGTAGCACTCATCTTTTATGGGCCAGCCTAATAGCATTTCCCACTTCAGTTGCTTCCTTCtcacattttctgcttttattagaCTTTATTGCAAGCCCTGCAGAAGCACAGAAAACCAAAGGAGTTTTGAGACATTGTTGGTAT--TTTTCACTCAAGGAAGCCAGAATAGAGAAAGAGGATTTGCCAAACGATTGACAAATCAACTTGGAACCGGTTTCCTATTCTGGAGGAAGGTTTTGCATTCCATG-----------GGAATCTTCCTCCCCATTTTGCCATTCTGTACA-TCTTCTCTAACACTATTCAGATGGTAAAACACATCTTACATTGTCTTTAGATGGTATAACATATACACCTCCAAGTCTTACCATATTAATATTCATTTCTCACTTATCTTGCAATCCAACATGAGATTCCTGGCTAGGTGGCTTCTGTCCAACCAGTGATGTGGGAAATTGGGCTCATTCCATTTC--ATTGCTTCACTACCTTCAACACA----------TACCTT-----------------------------------------AATACCTCTTC-----------ATTAG---------------ATAGCAGG----------------------------TGTACTTATAAGCTAGATGTGGAATTGATTACATGGCTCCCTCTCAATGTTAATTGCTTGAATTCTAATGACCATATCTAACTGCAAAGGAAATGGAAATATAGGTTACCTAAGCatctaagaaaaaggaaatatatttgttACGCACTAGGGAGTGGATGCCAGCCTCTGAACCAGTCTATAATGAATCAGTCTAATCTGCTCTTTTTAT-AGACCCAGAAAGAAAGGTAAGTCTGATTTATGGACCCAGATTTTCAGCTGTTCTATAAAATAATCTGGAGCACCAATGGATTGGA--ATTTGATTCATCTGTAAGATACATCTTTCAATAggaatttttccccattctcctaaAATAGTTTGAGAATTTATTAAATTCAGAGTGAGGTTTTTCAAGTTCCAAAAATTATGAAACAAGagctatttattttactttattttttaacaagaGCTATTTATTAAAGTTCATGTAAAGTGCAACTAAGTTGTCTTATTTCTCAAGAACCATTTTATGGTATTATTATTATATCCTCATTATtcttgagagaaaacaaaatgtgaatcTTGCAAAGTTTGCACTCAGGCAGGCTGGTTTATTTTTAGTAGAGATTGcaatatt-attaatataaaatttatttagttaggCAAAAAAGTG----------ATTTATGTGATGTTATATTCAGTCAAAAGGTTATAAAATGACAAGAATCATCTTTATTCTGATCTTATCAGGAAAGAACCTAAGTGTGGTATGCATATGAAAATCATTTCCAGCATGGCATGAATACCCTCTATTCAGCTTGTAGTATTTCCAGGCTTTCTGATGACGCTTCTTACCTCAAGGCAGAAGTATGGAAATATGCTCATGTAATATTATTTGCAATCCCCAAAGATCTAGTCTATTTAGAAGGCTGATTCTTGCATGGCTTCTG------------------------CCTTTGACCTGTAAATGATACTCC------TGGT------ATTATTAAGA--GAGGAAGCTCACAGTCAGGTACACTGTCAACAAactaatattttagtttttctc-----ttagtcttcttttcagtttaaaattatCTGTTCTTTCATCCAGAATGTTGATAGAAACATGTAGGTACAATACCACCTA-------TTCCATTGCCATAGTCTATTGGTCTAACGAGGGTTTCATGCTTCATCAACAAAACCTTTACCTAAATGCTGGTTTTGTCTCTTTGCAATG-TGGTTTTGCATA--CATCTCATCAACTCTCTCCAAGCCCCACCCTAAAAAC--ATTCATTCTCTTGAAACATGGCCCGGAAGGGGTTCGGTTCCTTCACTGGTGAGAATTAGAGATTCAGGCACTAGAAAAATTATCAGGGAAAACACCAGGGGATCTAGAGTTGGACAAACTCAGTTTTGTGCTCAAAATATAAAGATTCAATGTACT-TTAAGAAT-GACTGAGAGACATCCTCTGTAAGGCAGCTGGACAGAGCTATCCTCAAGTACATTATAGGTGTTGAGATTAACAAAGATGATCTCACGAGCTCTCAATCTGTATCTAAGATAGGAGCATGTTTGG

a score=24970
s chr3            99376968 622 + 160039680 ATCTTGAGAACAATTTCATGTATGGCCAGGTCATCTTCACCCAGGGAACCCTATGATGTGAGTGTGTTCAGACACTTAACCTATACTAGAAAATCCAAGCAGGGTGC---AAAGATCACTTGTGGGAAGGTGTGAGATCCACAGGGAAAGCCAAATCACCGAAGAGCTACCCCTGTGAGGTCCAAGTCAAGCAAGACTCAATAAGGGC----------TGTCAGGCATTGCATAGGCCTGCACTTGAGAGGTTGCTGGTGGGACCCAGAGATCCAAAATTATGGGCTATTTAGCTTGGCTTTCAGTATGACTAGCTCTTTTGTGAGTTGGCTGTTCTCGGGGATGTCACACCTTGATTCTATTGG-CTTTGCTGTAGAACATTTTTAAGGTGAATTTTATGCTTCCAATGACATAATACTTACTGTTTTGAGTAATAACTAAGGAAGAACCAATGGTAGGGATTGAATGCA--TCAAGCTGTTATCTCTTGGGCAATATTTCTGTGAGACAAGCTAGGCAGCACGTGTGCAATTTGAACAGGACCTCCTAATGCAAGCACACTATATTTACTATACTTTTTCTTTCACTGCATTCA-----GACCCTGTTCTCAAGTTGGTGGTGCTAAGAAGGATATGGGGg
s HiC_scaffold_1 109246482 619 - 233722169 ATCTGTAGAGCAATACCATATATGACCACACTATCCTCTCACTGGGAGCTTGATGATGTGAACATGTGTAGACACTTAACCCACCACAGAAAAGCCAAGCACAGAGTGAAAAAGGTCACTTGTGGGAAGGTGCGAGATGCTTCGGGAAAGCCAAATCAAAGAAGAGTTACCTACATGGGGGCCAAGTCAAGCAAGATTCAACAGGGGCCCTCTTGCGTCTTCAGGCATTTCATAGGCCTACACTTGAGGG--TGCTAGCAGGACCGAAAGATCCAGAGTTATGAGTTATTTAACTTGGCTTCCAGCATGACTAGATATTTTGTGACTTGGCCGTTCTT-GGGATGTCACACCTTTATTTTACTGGACTTcactaaagaatattttt-aggtgcattttatgttttcaatGACATAATCCTTTCTATTAGctgaaataattaatgaaaaaccAGTAGTAGGGAATATATTAATTTTAGCTCGTTATTTCTTGGAAAATGTTACTTTGCAAAAATCTTTAC--CAAAGGAACAGTTC--AGTGGACC-ACTGTTGCAGGTAC--------------CTTTTGTCTCTCATTGCATTGACCAGTGGCCCTGATAG-AAGTAGGTAGCATTAAGAAGAAGGTGGGAG

a score=17192
s chr3            99378041 736 + 160039680 TCTATTGTTTGTTTCAGTGTTCCTAAATACCCTCTGCAAGAAACCCAAAGCCCAATGACTGTAGAGTTTTTAGCCTGAGTTTTTTTTCATTTACTCCAAAAGAGGAGCTGTTTTCACAGGCTGTATAAACACAGGGTTGAGAGCTGCTGTGGTTAGAGG-CAAAGAGGCAGAGCTGAGGACCAAATCCAGAGATTTGGAACAACAAGAAATGAGCAGACTCCTGTAAGGCCTGG-GGCAGTGACTCTCTAGGAGTTTGGCCTTCTCAGTTTTACAGACCAGGAGATGACAGAATGAAATGCACTCTGATTTGATTTCTATCAACTTCTCTCTGGAAGCCGACA-TTTTATTAGCATGTTTTGTTTCAAAAGAAGCTACAGACTTTGG-------------------------------------ACAAATTCCAATGttttttttttttccttttctttt-------------------------------------------ccagttttttctttttttCAA-----------------------------------CCACATCACAGAAAGCAATATAAAGGGGAAAAGTCCTATAACTATTTTTTAAAAAAAATGTCTGAATTTGAGTGCTTGAATTAGTCTTTTCTTA--AAATAGAAGAAGGGTTATCATCAGC-TCCTAGATTGTCAAGGATAGTGTTCACATGTAACAAAAGACCTCAGCTCTGTGAAGTGGCACAAG--AGGAATGTGACATGTACAGCTTGTATTAGTGCTTGTCCATCTTTCTCCCACCTTTTGTCCATTTCATGATGCAGAA-AACATCACAGCAGACATTGATTCAAAAGAGGCCTG
s HiC_scaffold_1 109247129 821 - 233722169 TCTGTT-TTTACTTAAATTCTCCCAAATACCAACCATAAGAAACTCAGAGGGCAG-gttcatagaatttttaatcttagGACCTGC-CACCTGTTTTAAGGTAGCA-CAGATTTCACAGATTGCCTAAACACAGAGTGGAGTGCGGTTGTGGTTAGAAAATCAGGAAGTTGGCCTGAGGTCATGATCCAGAAATCTG-AACAAGGAGAAATGAGCAGA-GACTGTAAGATCTGGAGGCTTTGACTCTCTAAGAGTCTGGTTTTCTCTGTTTTATAGAGCAGGAGATGACAAAATGAAATGcactattatttgatttccattGACTTTGC-CTGGAATCagaaatttttattaacatatttgGCTTTTAAAGAAGTTATGGGCCTGGGGTTATAGTTTAGCAGGCAaagggcctgcttggcaaacatgagttATCATAGATCTCTCTTTTCACTTATTTCTGAAAACCAACTCTACCTTaaactcaaggtcctgagttcaattgctggattttttttttttttaagtggcaGTCTTTGGGCTAAATCCATATTTTTTCTGCTATGCCTTGGAAAACAATATATAGAGAATGAGCCTTAGAACTATTGT-----AAAGAGACCTGTGTTTTAGCCTTTCATTTCATCACTTATTAGTGGTTAAAAAGTAGATTAGAATCTACTTCCTAGATTGTTAGAGATAATGTTAATATGCAATCAAAAGCCTGAATCTCAGTAAGAGATTCAAGATAGAAACTTGGTGT----------TAGTAGTGTTTGTCCATGTGTCTTCC-----------------CAATACAAAACAATGTATCAGCCAAAGCTGATTCAAAAAAGACCTG

a score=41917
s chr3            99379540 1224 + 160039680 AATTTCAAATATATATATTTTAACTACTTGCA--AAATT-------GCCTTAGCTCTGGCTCCTTATAAATAATCG---CTGCTGGAAAATAAT-TTGGATTCTATAGATAGACATGGATCTTAGCAACTTATCAAGGCTTCTCTGTGCCTTTCATGGCCCTAGAATTACTAAGGCTTACCCAACAGCTGCTAGCAGCTCTACTTTCCCCAAAGAGGTAATCATGTGAACTTCAGCTGACTTGACCATGAACAAATTGGATACTGTCTCCAATAACCTCCCCTTTTCTTCTACAGATGCACAAGGCAGGGGCAGTCTGTACTCTGTCTCTTACCATACATAGACAGTTTTAGCCACAGCTTTCCTGCCATCTGTTTCATCAAGTTCTTAATCTCAGGACCATTAGTAATTGACACCATAACTAAGATCACCGGTGAGTGGTTGGAATCTTGGGATGGGCCAGGAATTTGACCTGTAGATTCTGGGGGAACTCACAAGAGTAGTCTTGTGGTAAACCAATATCTGTGGCAAAAAGTG-GTGACCGTAGCACATAGCTGAGTAGACACACAGTTTTCCAAGCCTGGACTTGCTCCATAAATAAGATAAAGTTTCCTGACCTATCTC--ATGTTATCTGTAACCATGGTTCCCACATGCTCAGGGCACAAGTCTGTTTCATGACCAGAGAGAAGAGTTTCAGGCTTCAGGCTTCCAGCCTGAAGGGAAGAATGACATAATATTGTATGTTCTCAGACACATACAATATCATACACTGGAAAATAACTGGATGA-AATTTAAAAATATAGAGTCCCCCTCCCCTGGTTTGAATTTCTAGTATCTTTTATATAAAATGCAGATTTGGATAATTTTGCAGCCTCTATTTTATAAGAAGCTGAGTGGGTTTTTCCTCTTTTGGAAGGTCATGGACTTTCAAATTGGACTGA--CTTCATTTGGTCTGTATCACTGGTGTGTGAGTTTATATCTTCTTGTTTAGATGTGATAATACTGACCACTCAGAAATGCTTTCTCTGCATATTGCTCAAGCAGAAGAGGCAAGCACAAGTACTATGTGAATTTTGTGGAACCTTCAGGGTCCTCAGCCTTTAAGCATTTCTGATTCATCTAACAAAGGACA--------AAATTCCAGTT---------------CCAGTATTATTTTTCCTTGCAGATTTTGAATAGccatcattctgattaataaacttatgtc--gagaggccaaataaattactctagtttgctaagg
s HiC_scaffold_1 109249224 1224 - 233722169 aactttaaaaatatatttt---attacttgtATTAAATTTTAACCAACGTCAGCTCTAGATCTTCA-ACAGAATCAAATCTGTTGGAAAATTATGTTGGATTCCAAGGATAGATTTGACTCTTAGCAACATATCATGACTTCTTCAACTCTCACATAATCCTAAAATGAGCAAGGCTTACTCAACACCTGCCATCAGCACCAGTTTCCTCAAATGGATAATCTTGTGTGCTTCAGCAGACTTGACTGTGAAGACATTGGATGCCGTTTTCAATGACCATCCGTTCTCC---ACAGATGCACAGGGCCAGGGCAGGGATCTCCCTGCTTCTAACCATACATAGACAATTTTAGCAACAGATAGCCTGACATCTGTTTCATCAGGTTCTTAATCTCAAGACCATTAGTAATTGGCACCATAAATAAGGTCTCCGGTGAGCGGCTGGAATCTTGAGATGGGCCAGGAATTTGACCTGCAGATTCTGGGGGATTGGATCAGAGCAGTCTTGTGGTAAGCTAATATCTGTGGCAGAAAAAGTGTGACTCTAGCACATAGCTGAATGGATACGCAGGTTTCCCAGCCTGGACATGCTCCATAAGTGAGATAAAATTTCCTGACCTATCTCAGAGATTATTTGTAGTCATAGTTACAGCATGTTGTAGTCACAATTCCATTTTATGACTAGGGGAATGGGACTCCGGCTTTAAG---TCAGGGTTTGCAGAAGGATGATATATTGCTA-----------------GTAAAAATGTAaagtggtaaatttttaaaaaatggtttatcAAAATTAGGATATTTTGCATAAATTTGAA-TTCTACTATCTCTTGGGAAAAAATAAGCACTTAGTAATTTTGAAGCTACAGCTTCATGGGGATCCTAGTAGGGTTGCCATCCTCAGAATAGTTATAAGCTCTCCAGTTTCATAAAGTCTTCACCTGGTCTTTTTCACCTGAATTGGAGTTTGTTACTTCTGGTTTGCATGTGATGACATTTACAACTCAGAAATTCTGTTGATATCTATTG----ACAATAAATGATAACCACACAGTTGGTGTGAATTTGGTGGTCATTTCAGAGTCCTCAACCCCAA-------CTG-TTTATTTACTTCAGGACAAATATGACAAATTATGATTTGATGAAAGTAACAACCAGCA----TTTAACCTAGAAACTTTTTATCCCTACCCCATTGACAAATAAACTGTGGCCCAGACAGGTCATGTAAATTACACAGGTTTACTGAAG

a score=30526
s chr3            99385583 1799 + 160039680 TTAGTGGCTATGATCACTAACAGACATCAAGCAGTTCTTTGTGCTTGGCACAATGTTTTTCGTATCAGCCAAAAATACACAGCCATGTTGGG-AATGACTGTTATAACTTCCAAACTTCAAGGACTTAATATAATATTAAGTatgtaatgtaatataatgtaatgtaTATAAATTACCATTGCCTATCTTGTACTCTC-TATAGATCAGGGGACTGTTAGGGGGAGAGGGAGGCAGCAATGCAGAATCTTGAGAT--TTTTATTTTGTGATTTTCACTTCTAGATCCTTGGTgct------------------gatggagaaagaca--gggaagcccacatgagaaact-tttgggtgaaggagaatgagtctgaaagtggtatgtgtcatacctgctcaaatcgcattacctacagctcagtcatgtggcttttcctaaggacaagagtccagatccactccagttgtgtgtccaagaggaTGGGTAAGCCACACGTGTTGAAAGAACTCACAATCTAAGTTATTTTGTTTAATTTCTAATGCATACCTACAAGGTCGATGATACAGCTCACCCCTGTTT--------GAAAGGAAAACAGGTGCA-CAGAAGCATAGTTTAAATCTGT-TTGTTTAGAAATAATGATAA---CAAACTATATACTTCA----------------------------AAAAGAGGGTGGCCTTTATTAATGCCCTGT-GGTTCTATGTATATGAAATGGGACCTTGATCGAGAAGCTTCAATAGAAGTATATATGATCTTGCAAGTCTAGGATAGATGCATGCTATAATAATCTCTTTGACCTTGTTGAATAGTTGACTTGTAAACTTGGTATAATGAAGTGATTTCCTGG----AAACTGGAGCTATT------GGAGACAACAgttgtcat-----tgttgttg-ttgttgttgAGGGACCTCCAGCTGGATAGAAGCTTTT------------------------------------------------GATGCTCTGA---TGCGAGATAAAAGAGACATGGTGCC--TTTAAACTTTCTTTGTTTTTGGCATTCATTTTTTTCACTTGGCATCATGGATGGAAATAGGCTT-TGAAAATTTCCCATGCAAACACAATAAAATGTCTA-----------AACAGGGCAGGGTGTGTAAGTGTGAATTTGTGGAGGTGTCGGTGGAGAGGAAGTAGGATATAAAAAAAAAATctggcctggcctggcctggcTCTTAAGAATGACCACAGCAATG-TGTTAAAAGAAGAAAATGGATTTTATTCTACTGTTTTCAACCAGATTAATGTTATTTCCTCTCCAGGTCTACTTTTAATGACTATGTCTGACCTACTGTATAGAGGGTTTTTTTTTTCCAAATAAATCTATGCTTGTAAATGGTGTAGATGGCTTTTGTTTTTCATTCAAGTGGTACTGTATAAAGTTCCCCatattatttatattattattttaCTAGCAATTGGTTTAATCCATCTTCCTTAGCTAACTGTGAGAAATGAAAGTCAAATTTTAGGTCAGCTCCTAAGCA-TTAAAACTCTGAAATAGGGAAATTTGAGTTATTGAGAAACAGACATTTACAAATACTTTTTGTTTCTGAA----------------ATGTGCATTATAACATTATTTGGATGATAACAACAAA---------------------------GTTTATTTATTTAAAAATTCCCTTAATTGGGGATATTCCTCATTTCCTCCTT---CTCTGTACA-TATCTGCTTACTCTTGGTTAGTAAACTTCGTGATTTCTTGTTAT--CTCCTTCTCTATCCCCATAAATGCTGGCAGAGATGATGTAACCTGAGCTCCTGAGCCTCCCAAAAAGGCTT---ATGAAGTGTTGAGAGCAGAAAAAAAAGCCTCCACGTGACAGAACAGATCCCGGACTAACATTTTCT--TTGACTAGGAGTCTGTT
s HiC_scaffold_1 109257919 1865 - 233722169 TTAGCAACTGTGGTAGCTAATATATATTAAGCACTTCTCTATTCTTGGCACTGTATTTTACACTTTAGCCTAATATATAAAGCAGTGTTGGGTAACAGCTGAAACAACTTTAAAATCTCAGTGACTTAATTTAAT-------------------------------------ATTATTCTTGCCTACATTGCACACTAGTGTGGTTCAGAGGA-GGCATGGAGGTGAAGAATGTAGTCATTCAGAGTCTCAGAGCCGTCTAATGGCTTCATCCTCAC--CTAGGTTCTTGGATTCATTTATACAAAGgtgaaagatagaaaaagagagtGAGAATCCCATGCAAGAAATTGTGTGAGGATAAGAGAATAAGACTAAAAGTAGTATGTATCATTTCTGCCTATCTCCCATTGCGTAGACCTTAGTC--------TCTCCTACCTGCAGAAG----AATGAACTGCA-------GACCAAGAGGACGAGCAGAGCATAGATACTGGAAACAC-CAGTTTCTAGGTTacttcttttaatattcagtatatacCTATGAGGTAGATAATACTATTTACCATTGTTTATCTTCAAACAAGGGTAAAAGTTCTAGTAGGGTTATAGTTCAGATGCAtattacactgaaagaagaaTAATGTCCAGTTACATGTTTCAGGGcttttataattgttattataaagtTACAAGACAG-GACTTTTATAGTTGTCACATGGGGTCTCTATATCTGAAATGGACCCTGG--------------ACAGAGCTGTTCATGGAC-----AGGATAAGAAGAGTGGATATTGTGATAATATATTcctaaatgttaaatattttatttg--aacttgAAATGATT--TTGGTATTCTGGAAATAAATGGGAGGTATTCTGTAAAGAGTCATGATTTTTTATCAGAGCATTGCTGAGTGCTTTAAATATGCCCAGGGCTGTATAAGATTTCCTGTAGAGACAGGAATATCTCTGAAGGGTATTCTTGAAGGGATTGTGGTAGAAGCTTTGATTTTGTGGGATAAAA-AGCCTTTAtacctatttaaattttttttccatgt-gcCTTCG-CCTTCTCAGTTGGCTTCACAAATGGAAACAGACTTCCAAAAATTTACCAcgcaaacataataaaatttctctaatttagaTTAACTGGGcagggtgtgtatgtgtgaagtTGTGGGGGTGGTTGTAAAGAGGAAGTAAGATATAAAAAAAA--------CTGGTTTGAACTGGGCATTAAGAATGAATAaatcaatgattttttaaaaagaaattttgttttattctattattttcaaaCACATTAATTTTGTGACAT-TTTAGGTCTATTTTTAGTAACCAAGCCTGATTTATTGTGTATA-----CCTTTTAACAGAACCAATTAGTTCTC-TAAATggagta-attttttttgtctttctctcaaGTTA----ATATCAAATTCC---------TTGTATTATTGCCCACCCCGCCATT-GTTCAGGCCATCTTTCTGAA-TACATATTAGGATTCCAAACCAAATTTCAGACTTCAGTCTAAGCATTTAAACCTCTGACTAAGTAACGTTTGAGCTAATGTGAAataca---ttataaattatttttgttccttaAGGCAAATCTTTAAGGCATGTTTATTAATACCTCACGTAggtgaaaagagcaaaataaaattgaatttaccttttaaacatatttcttcatttagatTTATTCTTAGTGCATTAGACTTCTTgttccctccttttcctctgcCTACTGTCTGCTTCCTCTTGATTACTTCTGACTGTGCTTTTCTGTGatccctcctgctctct-cccacACACGTTGGCAGTAAT-ATGTTTTTTAGGCTCCAGATC--CCTAAGAACACTTGGGAGGAAGTGTATGGAGTTGGGGAAG------------GACAGTG-AGCTGCCAGAAtaactttctctccttttttcagagtcagtt

a score=26008
s chr3            99395169 1189 + 160039680 TGTGAGA--CTCAGTGCCATAGAAGCTAGTCTGGATTTGT----GGATGTTGTCATTCATTTTACTAAAAAGTGACCTTT-GAGCCATTGGGAGCCAG--AGTCTTGTTGAGAGAGCATACAGTGAGGGGGTAGGATGTCCCTACACCAGTTTCTTACCAGCATCTATGTTAATGGCAACATCTGGGCTTTCTACTCAGAGTGCTAGCTACTGAAAGAACACCAGCCC-ACTGCTTTCCCTGAGAAGTCATGTCAAACAATACTTA-----------------TCAATTTTCAGGCA-GCTTGCT-----CTTCCTTTGAGCTTGGAGAAATCCTGAGTTTTGGCCCAGCTGAAACCCACAAACTGATATCCATTTTGTTTAATCAGGTG----ACACCGTGAGTCTTTGTAGGCTTCTGATCCCAGTTATTTAGATAAAG---------TATAGTGAAGGCATAT----TGAGCTGAGCTAGTGACCAGTATGATTT--TCCTAGAGCTGGGGTTGTTGAGGGTTGGATCAAATATCCATTTGTCTGGAAAA------------TCCTTTGTAAGGCAATATGAGTGAGGCACATATATAGCGCTCCTGCCCCCGGGTGCAGCTACTTTCCAGAGAGCATACGGATCCTCTTAGACTGGGCAGGGAAATTCATCAGCACCGTTCTCGTCCCTGCTCAGCTTTGACCTCGCACTTTGAGCTTTTGACACGGTGACTAAGAGATGCTCTGTCATTTCATGGCATGAAAGCTGGTGACAACCTGGAGGAAAATAGTCATGAATCTTGAAGTTATTAAGTAGTAAGGTCTTGGTTGTCTTTTCTTGTGCCTCTGGGCAGTCTAGTTCTATTCCCATCTCTCAGCACGTCCCCATTTGTTCTTACTTCTAAGTGGTGTTGTAATGTTTTACACTTGTTAG-TTTTGTGGAGGTCATTTAACCGTCCCTGAGGGTCCTTGCCTACCTTGTTTTCTAAATTATGTGGCTTTTTTTTTAATTTTTGAAGCTTCTGGACATGTCTATATTATGTGTTGAGCCAATGAACTTCTCTTTCTTTAAAATGTTTCTAAGAGACAGTAGTTAG-CCAACTTGCTCAAGCCTCCA-ACTTCTGGTGAGGGATCGAAAATCTGCTCTTAGGTCAATCATGAGGGAGAATAAAGACAGGAAAGAATACAGAAGACTGGAGTTTGGCTGAGTCTACCCTGATGTAAAAACCCCATCTTACTTTTAGACCAGGT
s HiC_scaffold_1 109261249 1119 - 233722169 TGTGAGATTCTCGATACTATAGAAATGACCTCTGGCTTGCCAAAGAAAAACATCTTACATGTCAATTGAAAATAGTCTTCAGAGCAAGTGAGAGCCAGGAAATGTTTATGAGAAGGCATGGGACAAAGG--TAATCTATTCCTCTAGCAATTCCTTTTGAGCTACGA-GTTTCTGGTGGCATCTGAG--------------------------AACCATCATAAGCCCTGATGCATTCCCCACTAAGCTCTATAAAGTAACATTTACTCCTTTAGCTCTGGGCTCAGTTTTTGGGAaagcttgctgctttctgcctttaAGTACAGGAAAATACCAA-TATTGACTTGGCAGAAGCCAACAG--------TCACTTCACTTAGCCAGGTGGGTGACAC--TGGTTCTGTGTAGAGTTCGGGTTCAGGTAACTCCATCAAGGGTACTTGGCTATAGTGTTACCATATACTTCAAGCCCAGATAAAGACTATTATGATTCCATCTTCGAGTAGGGGC-ATCTTTGGTTGCCTCAAATATTCACTTGTCCAGAAAAAGCTACATGAGCCTCTTTATAAAGCAGtatgaaatatttatgtacaTTA---TTTTGACTCTTGGTGCTGCTACTTTCCAGTGAGCATACGGATCCTCTTAGAC--ACCAGGGAAATCCATCAGCATTGTCTTCATTGCTGCTTGAGTTTGACCTTCTGCTTTGAGTTTTTGACATGGTTAATAAGAGCCACTCTATCACTTCATGGCATTAAAGCTGGTGACAACCTGGAGGAAAACAGTCATGAATCTTAGAGTTATTAAGTGTGGGGGCCTCAGTTGTCTAACCTTGTACATTTAAGCAACCTAACACCAGCTGCATCTCTCATtgctttctcatttatttttagtgcTAATTAATGCTG---TGTTTTATACTTACTAACTTCTGTGAAGATCAGCCAGTCAGCCTCGAATATCCTGGTCTACCTTGT--------TCATGTGA--------------------------------------------------------GAACTTTACTTT----------------AGAGAC--TACTCAGAATAGCTTGTTATATCTTGCATGTTTCTGGGGAGGGCCTGAAAATGTGTGCAGAGATCAATCACTAGGAAGAATAGAGGTC-AATGTTATACACAAAACT-CACTATATTTAGGTCTATCCTGACttaaaa----tatctaatttttaGACCATGT

a score=34046
s chr3            99399346 1187 + 160039680 Tacaaaggataccaattctaggaacatacttaatttcatccattaagaaatgccatcattttaatatata---------atccatgtagagataataacactgttttataatacattttttgtcttgattctttgaatccagtatgtattttgtatgtggaataccttttgaactct----tagatattttgggtccttgtctgtcacacatgacaagtggcttccatactggaTGATATCACAATGGAGTTATTATTAGTTTTTGCTATGTTTTGTTGGCATACTTTCAAGGCTTCAGG-AAGGTCAAAAGAAAGAGCAAGAAGGAAAGACTTTCCCCCCTTAATAGCTATACTGCCCT-GCCTCTCTAAATGT-----------------------------GTTTTGATTTG----------------------------TGGTAAACCCAAT---ACCATCCACACACTCC---TTACTTCTCTACCAAGGATCCAGA-----CCCCATCCCTGGG---------------CAGCTGAGGTAGATAAGAATGGGAGAGAATTCCCTTTCAGATTTGC-----------------------ACCTTTGCT-------------------TGACCAACTCTTTCTTTAGTTTTCTTGC--AGGGGCAAGGGATTGTCAGTCTCCAGGCTCGTTAGCTGACCTTAATTAGCCATCTACTGAAGGATGTATATAGGCACACATTCCTCTTTCCCTGCTGTAGGGAGTGAGGTGGTCAATATGGGTCTGGATCTGACACTGACAGATTCTCATGTTGCTTCCAAAGAGATGCCCAAGACCAAATGTTACAAAGACAAACCATATGGGAACCTCAGCACTTGAGGCCATTAATAGAAATTTTTGAGCGACTATGATTGATGGTGCAGCTCTTACAAGTCCAAGATCAATGAAACAGCATCCTGATCTTTTGAACTCTCTCGTTTTATCTTGGATCCCTTTTCTGTACCATGGGATCCATTTCTGTGGTGCCTGAAGGCATTTGGGCCT-CTCCATTGGATTTGCTGCCTATGCCCTTGCCAGACAGCCTGTAGGTGGGATGGAGGAAGACAAGGGCCTTGGAAAGCAGAATTCTCATCATGAGACTCAATGTCAAGCCAGACCTTTCAAAATGAGAATTCAACACCCTGCCTAGA-AAAGTCTGGAGTCTAAATT---AACATCACTCACTTTGATATGGACAAGTGGAAAATACTATGAAGGTAAAC----GTGTTCCTGAGTTTGCTTCTGTATTCTTATTTACCTGAC------ACAAGAAGACGTCCTTTCCTCCTTTCTCT
s HiC_scaffold_1 109272623 1315 - 233722169 TATAGAATAGAATATTTTGAATGATATGTTTAATTATACCCACTATTTAAAATACTCACTATAATATATATCTAACATGATCTATGTAAAATTAAT----------TATACTAAATTTTATATCCCAAGTCTTTTAGTATTATCTGTACTTTATATGTACAACATCTGT-GAAATCTACACTAGCCATTTCAA-TCCTCTTTCATAGCATGTAATAGAAGGCT-CCATCCTGGATCACGAAGATCTGGACTT--TACTC-TCTCTGCATCATACTGTGTgc---ctttcattcctttttgtgaGGTCTGGAGAGGGAGTATGAAGGAAGG-CATTCCCTTCT--GTGGCTAcacctccttctcctttcttaaTATTGATTTTCTCTACACAGAGAGCCCCTTAAGTATCTATTAGAACAATGCATACCTATATCAGGAAATGttagtgagctcaaataaacaatcta-atatTCAACATtaagcttctaggaaaagaacaGATAAAGCCCAAAGCCAGGGAACATCCTACAAGCACATCTGGGGTATATG-GAATGTAGAACAATTCCTTTTCAGGCCTGTCGCCTCATCATCGTAGTGCCACAACCTGTCCTGGTACATTAGTTTTTGAGTTGACTAAATGTTGTGTTAGCTTTTTTTCTAAGAGGAAAGGCACTGTCAGTTTGCTGGCTCCTATTTTGCCCCCAATGTTCATTCATCTGAAACATGTATTTAAGCACACATCCTTCCTTCACTGCCTTACACTGC----TGTTGGGAATGAGTCTGGATTTGACATTGACAGATTCTCAT-CTGATTCCTAAGAGATGTCCAAGACCAAATGTTACAAAGACAAACCATATGGGAGCCCCAGCACTCTGGACCATTAATAGGAATTTTTGAACAACTGTGATTGATGGTGTGGCTCTTACAAGTCCAAGATCAATGAAAATGCATCTTGATCTTTTGAACTCACTCATTTTATCTTAGATCTTTTCCCTGTGAAATTAGATGCACTTCTGTAATGCCTGAAGGCATCTGGGGCTCCTCCAATGGATTTGCCATCTATGCTCTTGTTAGCCAGGCCTTTGGTGGATTGGAGGAAGGTGAGAGGTTTGGATACCAGAATTCTCATCATGAGGCCAAATGTGAAACAAGATCTTTCAATGTGGGAATTGTACAATTTTCCTAGAGAAAGATTGTAGGACAAATGAAAAACACCACTCACCTTAACACAAATTATGGTATGCTAATATGAAGATAAACATTTGTGTTCTTAAGTTTGCTTTTGTGGCTCCATTTACctggcttgcttgcttgcttgcttgctttctttctttcttt

a score=16610
s chr3            99400515 1201 + 160039680 TCCTTTCCTCCTTTCTCT-AAATTGCACCAAGGTTTTGAGGGCAAGCCTGATAGAGAATTTGCCCTTCTTAAAGAACCCTTTTTCTCCCCATATTTAAAAACTCCTCTTCTGAAAATAAATAGATG---TGAACTATGCAT-CAATATAGATACAA--------------------ACTTATAGGTCTCATATAGT--CAGTTAGTGGAGAGAAACCATTATGGTTTAGAAGTGAGGCAGTCAGACTGAAGTGAGTGCTTC--CGTTTGGTTGGATAAAGACAGGAAAAAGTCCCTTTCTTC---TTTTGTGTGTTTCTCAGAAAGT-CCCCTGATGCTTTATGAAGATAGGTCCTATGGTCAAATGAGCCATGAATCTGTGGTCACCAATTATTTTCTTCTCATTTGACCTTTAGAAGTTCATAACACAGACAAGCACATTGCATATACTAATAAATTATAAAGAAATCCTGCATCAAATTAACCAGAGAACCATGTTTCTTTGTAATAGCTCAAACCTTCCACAGAATGTACTTATTGGCCTATGTCAAATTTAGGGCAA-------AACATTGTACCTCTTGGTTATTCTCCCCGGTAGTCGTCAGGTCCTGATTTCTTCCTG-TTTCAGATTTGTAGTCTTAGTGTCTGTACCTGTGGTGTTCTCTCTCAGCA---------------GAGTGTGTGGAGGTAGGACCTTGAGCCAGGGAAGCAGGATACCAGGAAACATCAGGCGCTTTGTGTGTTTTTGTCAAGGGTGCCATTCTCATAAACTATAATGTTAATGGTGTCTCCATGGGTGTGTA-------ACAGAGAGACAATGCAGTATGGA-----CTTAGCAGTGGGTCTCATTCCACTTTATCCATTCTTTGGTTGGTGGACAGGCTATGGTTTTTCTTTGGTGTCATCTG--TGGAAGCATGGAACTGGAAGTGCAGTTGTCAAACATGATGGGG-------------TGGGATTAAGAAAGGGTAAAGAGACACATTGGCATTGACAGTGGGCCTTGTGGGGGGAGTGGTGGAAGGCTTATTTCAGTAGCAAGAAGCATCTGTTGGCAGAAAGGATGATGAGAGCAAGCTCTCAGGCACGTGCATCTTCAGAAGCAACAGTGCATCTTGCATCTCATGG--CAGTGGTGATTAGAG-ACA---GGGGAAGCAGCCTCCATGA-TAAGGAGACCCTAGTTGT--TCTTCATGGTTTATA------------TGGGAGCACACCAGCTTTACATAAGGATTCACAGCTGTAGAAGGCAAAAGAC
s HiC_scaffold_1 109277188 1213 - 233722169 ttctttctttctttctgtcaaatTGTACCaagattttaaagataattttggtagagaatttgttttattttggagtttTGAATTTTCCCTAAATGTGAAAGCCTCTCT---GAGTATACATAAATGAATTGAATTTTGAATACAATTTCAATGCAATAAAAAATCACTTGGGATTCACCTAGGGACTTTATATTATGGAGACTTGTGCTGAGAAACAATTATGGGCTTGATGTGAGGCAATACATTTGAGGTAACCACTGTATCATGCATATAGAAAGAGTCAATAAACTGTatcatttttgctgttttatgtatttctcaGAAACTGACCATGATGGTTTACAAAAGTCAGTTCTTTagtcaatt---------attttttttcaccA--------CTTCT------GCTTTTGAAATGCTGTAAAACAG-----TACATTATGTGCTCTAAAATATTG-AAAGAGATCCTGAATTAATTTAGGCAGAGAACCTTATATTTGTGTAGTATATCAGACATCTCACAATATGTTGTTATTAGCCTGTGCTAAATCTAGACCAATGTGTAGATCATTCTACATCTTGATTCCTCCCT----TAGAAACCATAGTCTATTTTTTCTCTACCCTTAAATGTACAGTGCATGTGTCTGCTTCTCTTGTGTCCTGGGTGTACATGTGGGTACATGCCTAAATGTGCAGAAGCAGACCCCAAAATTAGTGTAGCAAGAGACC---TCATGCAAGTCATATTTTGCAATTTAAGAGAGTATGCCATTCTTATAGAACATAGTGTTAAAAACATCCCC-TAGACTTGTATAGTTGGACAGTCACTGATTGCAGTTTTAAAGATGCTTAGCAgt-------------ctttgttcatt-tttgcttTGTGGGCA-ATGAGGATTTTCCTTTGTTGGCAGCTGTCTGGAGCCATATAA--GAAATTGTGGTTTTCAAGTAGGCTAGAGATCATGCTAAAACTGGATCAAAGAAAGTGTCATCAGTAGAGTTGTTATTGAAAGTGAGCCTTGAGGAA-----CATGAAGAATTCAATTCAATATTGAAGGACCTC-ATTGGCA-----AATTATGTGGGCAAAC------------AAACCATGAGAAA------------TCACATGTGATGGAACTGTGGTACATAGGGCACATTCAAGAAAGAGAACCACATGACTAAAGATAATCTGACTATACTTTTCATGACTCATATTTTGGAAAAGGTTGTAGCATCTTATATTCATTTAAGGTTCTACAGgtatagaaaatgaaagac

a score=19556
s chr3            99423642 858 + 160039680 atcttatctaagctcctattgtttaaaagctgaaggaaataaagcttagagatagtgatttttccaaggtaacatagctggtaagacacagacctaga-------tttaacctaatgtgtttgattcctaaaatccatgTATGAATCTCTCATACCCTGAGGCCAACATATAGCTGT-GAATTTGCACATCTCTTCCAAATTCAACCTTCAACAAAGTCATTTTATTGCTTAGAAGTACACATATTGTACACATTAA-AATGTGTGTCAATTTTGGGAACTCGGCTTCAACCCTCCCTGTGTCTGACATTGATCAATTACTTCTCTGTGGGGGAAATGCACAGACTAAAGCCATGGGAGCGACAAACAGAAATGATTTTCAGAAACTTGTCTGAAA-----CACAATAGTTTTGTGACT----------------------GAGTGAGCTATATACA----------------------------------------------AACCCC---------------ACAGGCAGAGAGCCCACTGACAAGCACTCAGTA-CCTCTCTCAGTGCCCCCAAAGGCACTTTT--------------AGTAGAGGCTGTATCAATGCTTGCAGATTCCTAACAAGGCCATGTTTCAT--CTGGTACCTCAGCATCTCCTCAAAATTGCCTTCACACTCTTAAGTAGAAAGGGAATTCTGTGGATCT-GTGAAGAAAAATCTTTAGGGTCTGATTATACAGGTCATAGACAATCCATACACTC-TTCCCCCACCTCCTCATTACCTTCTGGTCTCTTGACTGCTCATTAGCATCTTGCCCAGGGACCT-AGCTTAGGAAGGAATGATTGGTTGTGGAAGTCTCATTAGCTCCCCTGGCTTCTGACCAAGAGCTCTTGTGCAGCTTTTGTTGCTAGGAGAAACCTAGAGACAAGGCAAATAT-CCTCTGGCATATGGAGGCCTT
s HiC_scaffold_1 109296423 940 - 233722169 attttatttttatttcccttgtttaaaaa---aaggaaat-----tt-----taattaCTTGCCCAATGTCACATAGCTAATAATAAGCAGATCTAGAATTTGAGTTTAATCTTA---ATTTGACTCCTAAAACCCAAATATGTATCAGTTATGC--TGAAGTCAGCTCATAACTATTGATTTTGGACATCTGTTCTTAAATCTACCTTCAATAACATAACTGTGATagttaggaaaatgcaaattctgCAAATCAGTACTTTTTACCACCTCTGGAGACTTGATTTTCCCTCTTTGTGCATTCTACTTTGCTAAATTAATGCTCTGAAGAGGAAGACAACAGAATAAATCCATGGAAGTGGTAAAGGTAAGTAGTATTTAGAAACCTTGCCAAAATATACCATATTAGTATTGCAGCTCTACTGAGAAGCAAAAAGATGGGTGTTAGatgtatatagctcagcagtgtagtGCCTACTTAGCAAGctcaagttcctgagttcaactcctgtacacaccaaaaaacaaacaaaaaaagaaaagaaaagcagcaagTGTTCATCCTTAGTGCTCtacaaaacactttttttttttttttttgtatgaaagTTGTGTCAAAATTTGCCTACTCTTAACAGGtcctttttcaattctttgtacttcaatatcttctccaaatttc--tcaTGTTTTCAGGTGGAAAAGGGATTTTGCAAATCTAGTTAAGTCAAA--TGAAGGAACTGATTAAACAGGTAATAGATAATCTAcatcctctttcctcctcctctctatCACCTTCTGGCCATTTTACT-TACATTAGCACCTCAGCCAGGAACCTGGGCTTAGGAAGAACTGAATGG--GTAGAAGCTTTATCAGCCCACATAGTTCCTGGCTAA---CTCTTGTGTAGGTTTT--------GAGTAATTTAGAGGCTAGGCAAATGGATCAATGGGACATGAGGACTTT

a score=108837
s chr3            99444602 5140 + 160039680 [encoded data, 5487 characters]
s HiC_scaffold_1 109300548 4827 - 233722169 [encoded data, 5487 characters]

a score=4375
s chr3            99445511 171 + 160039680 AAACAATAACACTAAACTCTTAGGACTTTCCAGTAGAAATAAGCTTCTAAAGAGCTTGTTTGTCCAGCAAAGTCTTTTCTGTGTGGATCAGAGAGCTCATGGGTTGCCAGGA----GTGAGAACATTTACCCTAA-TGTTTCATGGTGGCTGTCTGGCTTAAATTAAAAATCCCCT
s HiC_scaffold_1 109301718 172 - 233722169 AAACAGTGAAGCTGTAAATTTAGGATTTTTCAGAAGAAATATGTTTCTGAAAGGTGTGATTTTCCTTGAAAATCTTTTGTAGGTGTATGAAAGAGCCACTGAGTAgtaaaaaaatgacaagaaaatttaCCTTGGCTATTAAATGGTAA----CTGGCCCTGATTAAGATTTTTCT

a score=32631
s chr3            99456088 861 + 160039680 ACAGAGAATCTTTTCACAAAATGTAGTCAATTTATATTTCAGGCATTTAAAACAG--TTCATTGGCTCATCTGGACACTGAAAAGTCTCCTAGTCTGTCCCAG-TGATCTGGCACGCTACATTTGGCTCACACTGAGAACTCATACACCTGGCAATGCTATCTCTACTTTCCTGATTCTCAGAAGGAGGTCTTCAAACACAGAAGTGTTTTGGATGGTGTGTTGTGTTCAATGTGCCCAATGCCAATGCATGTAAAATAATTCATACCTGGGTATGGGAAGATGAGGCTGAGGACCAGGTAATGGAGAAGAAAGCAGCTCACATGATAGGAACTGTAAAGACATGGA-TATATTATTCTGAAAAAGGTTTAATTGACCCAAAGCCTT-TCCCAGTGGGCTCATTCTTGGTTTCATTAATGTTTATTCTCAGAGACTTCGTCACCTCCTTTGTGACTAACTTGACGTTAAGCTTTTTGAGAAGGTTAGGAGCAATGCAAGTTTAACCCAACACTTAATAATATCCAAAGTCCAAGTTACCTCTGGTGGGATTACAGCTCCATAAACACAGGCAAGATCTGAGACTTGATAGTTACAGTTGCTTGTGTTACCTGGGACTCAGTTGTTGGCCTCACAACAGCCAGGGCTTTCTGGAAGAGTGGGGGAAGCTGTCCTGCTCCAATGTA----------ATAAAAACAGAATCTGAGGACATTACTCAGGCTCTATAGTGATAATTTTTTGtgacaca----tggaaagtgtccagtatagtgcctggca----caca-gtacaaacttctaatgttagttTGCCTATAATCATCATCACTGAAACAGGATTCAGCCCTAGCAGAAACTTGGCAGTTCAGCATCAGGAAt
s HiC_scaffold_1 109311887 845 - 233722169 ACAGAGAATCTTTTCACGAAACATAGTCATTGTATATTTCAGgcatttaaaacatatttcattGGCTCATCTGAACACTGGAAAATCTTGTATCCCTTCCCAAATGATTTGGCACATT-CTTTTGGCAAACACTGAGAACTTTCACACATGGTAA-ACCACCTCAACTTTCCTGATGCTCAAAAACAGTTCTCCCAAGCTAGAAGCATGTTGGATG-----CTATGTCAAATTTGCCCAAATCTAACGAAGGTGAAAACCGTCATATTTGCAGATAGAAAGATGGGAATTGGGGCAGGTTAGTGAGG-----------------TTTGTGAA----AAAAATATGGAATACACTATTTagataaaaattcaataaagccaaaaagttATCCCAGTGGTCttattattagttttattaaTGCTCATTCTCAGATATTTAGTCATCCCTTTTATGACTATATTGAAGTTAGGTTTCTTGTAAAGCCAGGGAGTAATGAAAATTTAACCCAAC-TTGAACAATACCTGAAATTAAAGGTACCTCTGGTGGAATCACAATTTTGTAAACAGAAGCAAGATCTGCAACTTGATAGTTACAGTTTCTGTAATAACCTGTGACTCAGTTGTTGGCTTTGCAGCAATCAGAGGACTCTAGA--AGTGTGGGAATCTCTCTTGTATGAATACAGCTGTTGCGTAAAAACACAGTATCCAAGTACATAATTCAA---CTATCATAATGATGTTTGATGATGAAATTGTTGAAAGTA-CCAGTACAGTACTTAGCAATACTACATGTACAA-----TAATATTGTTTTCCTTATAACCACCATTACTGAAATGGGATTCAGTCCTAGAAGTAAGTTGGCACTTTAGCACtaagaat

a score=24067
s chr3            99458538 1007 + 160039680 AGACTCTTGCTAG-AACTAATATTTTATTAGCAAGGTCTCATCTGTGAAGGACTTTGAT-AAAAGTACC------TTTATATGGGTATTCTGAT---GAtctctc----------------tctctctctctctctctctctctctctctctctctctGTGTGTGTGTGTGTGAG-------AATTTGTTGTTGAACTGATAGATTTCCTTTTAAATTCAAAATACAAATTATCCAGGTTGCCTGGGATAGTAGGAAAGGGAGATGATCTGTAGGATC-TTCAGTGGTAATGGCAAAACTGGAATCTCTTGGCCATGA-TATTTAAGG--CAAAGCGATGGAAGCATCAGAACTGTCTTAATAGAAAAGAGAGGATGTGGTAG--------GATCTGAGAGAAAAGAAAGGAGTCATAGAAAGAGAGTTAAGAATTGCTGTGCCCCCTGATTTTTTTCAAAATTATAATCTATGAGCATAGGTTATAATTGACTTGAATAAA-ACTATTTTATTGGAATGATTTTCAGGTCTTTGGGAGTTATCCTGAGCAATATTTGGTGTGACCAAA-TTGCAGTACCGTGGAAACATTCGGACATCC----CTCCTTACTTTTTGAAGATCATTGTCATGGAATTTGGCTGAAAGCACTCTTTATATGGCCAACTCTTAGTCATTCCTGGAAATACAAACTCACATTGATAGACTTTTTCTGCCCGTTTGGGGCAATGCCAGGTGGTGTAAAGGACCAAACACAAGCTTGGCAGTGCTTATTCAATCCTGGTCCAAGTGTGCTTTTATGAGTATATCTTCAC----TCTGTGCCACTCCTTCAGTCCCTACCCCTCTCCCATTGATACTGTGCCCTAT--GAGTTGTTAGAGCCAGAACGTGCAGAGTTACACATCTGCAGAGGCCATTAATCAAAAGGCACAAATAAGTTACAATAT-AAACCATAGGGTTTGGACCCCAATCTAAAAATGACTTTTCTTTAAATTGCCGATTCCTCGCTGTACTCTATTTTAGGGCTCATTACTCTCCTTTGGGCAGTAGGTCTAACTTTC
s HiC_scaffold_1 109313927 1024 - 233722169 AAAGTTTTGTTAGTAACAAATATTTCACAAATAGAGTGTCTTTTGTGAAGGAGTCCACTGAAAAATATCCAGTTATCTATATCTGTATTCTAACTAAAAACTCTTCTAAATttggtgtgggtgtgtgtgtgtgtatgtgtgtgcatatgcatgtgcttgtgtgtatgtgtgtgcacttgtgtaatctgtacttgtgtcaatggATTTTTCTCTAAAGTGAAAATGTGAAACATTT-GTTTGTATGGCATA-CAGCGTGGCAAGATGGTTTGTAGGAGCATTCACtggtaaggaaaagaaagacgCCTTGAGGCCTTGGCTAGTGAAGGGTAAAAGAGATGAGAGCAGCAGCTCTTTTCTCA---GGCAGAGAGAATGTGGGAGCATAGTTGgttctggcagaaaaaaaaa-agatatggaaaaGGAATTAGGTATTGCAATACCTACC-----TTTTTGAAATTATAATCTGTAAGCATAAAT--------ACTTTGATAGAGACTATTTCCTTGGATTCATTTTTAGATATTTGGGAATAATCTTGAGCAATATTTGGAATAAAAAGAGTTGTAGACCTGTGGAAACATTTGAATACCCTTCTCTCTATGATTCTTGATACTCCTTGTGATGGAATTTGTTCTAACACAATCTTTGCATAGCCAATTT-------------GGAATACAAGCCTACATTGGTAAACTTTTTCTTTCCACTTGGGACAATTCCAGG-------ACGGAAC-AATAGAAGCATAGTACTAGAAATTGATTCCTGGTTTAAGTGTAGTTTTATAAGAATGTCTTTGCAGAACTTGCAATCTCTCTTATCTCTCTGTCCTTTTTCTATC-ATACTGCTTTATATAGGAGCAG-TAGAGGTCTAACACGCAGAGTGCTACATGTGAAGAGGTCATTAAATATAAGGTACAACTAAGTCAcagtttaaaactataaaaacttgATACTAATCTAAAAATTACTTCTCTTTCATTCACTGTCTCCACAATGCACTCTGTTTTAAGATCCACAATTAGTATTTGACTAGTGTAACTTACTTTC

a score=20900
s chr3            99459534 687 + 160039680 GTCTAACTTTCTGTAATTCCCTCTTTGAACTGCTGTGGGAGAAGTGTGGGCTCTGGAAAACGTGGTGATGTCAGAGCTTTTCCTTCCACTTCCCTGGATGCCTCACCCATGTCTCTCGTAGGACCCTTTCCACTTTCTATTTGTTGCCTGGCCTTTATGAACGTGGCTCAGGAAATGGTCTGTCACACATCATTCACACCTCGATGTAAATTTAGGCTAGCAtgttacctctccccggggtatttgcatttGATGATTTCTTTCCCCCTTTAAATACACAACGCCACTTTTTTTTTCCTTCAGAATTCTAGAGGAATTAAAGTTCTAGTCCCAAAGCAGTAGACCTGGTATTTGACTGAGCA---------------------------AGGCAGCTCTAGTGTATAAGGTTGGCTCTTCCCACACATTGTGCTTCAACTATCCAACTTAGATGCAGTT-GAAACCTGAACTTTCTTAGACTTAGGATTTTTGTGAACCAAGAAGAGAACAATCATTATCTTTCAAATAAGAAGGAAGGACT------AGATG--CTATAGAAATCTGGCTGGAAGTGGCTCATCGTTTTTGTTTCtatgacacctagactccaagaaagcatccaatggctaatgctt--tatggaattcacacctctttagtgtactgtctctttaagccaga-tggctctatgacactaagagactgtggtgggagtgaaagc
s HiC_scaffold_1 109315337 684 - 233722169 gtCTTACTTTCTGTAATTCTCATTTTGAACTGTTGTAGGATAAGTGTGGGCCCTGGAAAA-ATGCTAATGTCAGAAATTTTACTTCTACTTCTCTGGAAGCCTCTCCTGTATTTCTTGTAGGATCCTTTCC----TCTATTTATTGCACAGCCTGTATGAAATCTTCTCAGGGTAAGATCTTTCACAAAtcatttatac--------aaatttagaccAGTATATTACCTCTCCATGGGCTATTTGCA-----------CTTTTTTCATCTTAATATATAA---Gagtgtttttgtctgt-----ttttagaGAAATTTGTGATCTAGTCAGAAAGCAGTGGGACTGCTATTTTATGGAATAAGAAACTGATGTTTCTGGGTTTCTATCAGATAACTCT--TGTACAGAGTCAGCTCTTTTCA-AAACTATACTTCAGTTACTTATTTTGGAAGTACCTAAAAACTTCAACTCATTTTAACTTA-GATTGatgaaaaccaa----agaaagaccatTACCACTGAAATGAGACAGAAGGTCCCAGAAAGAATGATCTACAGCAAACTGGTTTGATGTGAGCCATCTTCTCTGTCCACACGATAATTAGATACCAAGAGGATATCCAGTGATTCAGGCTTACCATAATTTTCACATTTAGGTACTGTCCTCCCCTTTGAATCAAGAGTGGATCTGTG--ACCAATAGAACATGGTGGAAGTGATAGC

a score=39964
s chr3            99466653 1822 + 160039680 TTCTCACGAAAGATTAAAGAGTGTCTTTCTTCACAAAG--ATGAAGAATGTTTCA--------GAAGGGGAGAAGAAAGGCAAACTAAGGGCATAGCATCATTATGAGTCAACCATGTA---------------------------GTTATAAAGCCCACTGTTGCACAGGTAGG-GAGGGTGGTACACAGATTCCCTGGAGAATGTCACAGCCAGATAATCTAGTTTTGTGCTAATTGAAACTGTGTCTCTGTGA-----------------CTCCAG-------------TGGAAAATTCTACTC--CATGTTCCAAAATGACTGAATGTGACTGTGAATCCAAATAAAGTTCAGTCCCTTCAGACATATTTAACCCatgctatctatgcagtgctatgccatgctatgctaATGTATAAATAAGTCAGTCTTTAGGTAATTTTGTAAAAAATGGGAATATTTAAGTCATGCCTTTACTAAAAATTTCCCACAAGAAAGTGTTCCAATATAAAAATATATTAACTGAATTATTCCTCAGCGTAATCAACAATATGTTAACAAGTACTGACTATGTAGCTAGT-GCTGAGCTGACAATTGGGTACAAATGTAG--ACAGCTTCTGATAGTATATAGTTCATTTTTTGAGAGAAAAGGGTTTTCTA---TGTTATGGATTACCTAA-----GAAGCTAAT------------------GGTTGTTACAGGGTGAAA------TCCTGTTGTTTAG-----TTTTGCTTTGTTAGAATACACTGAACTGACTCTTTGAACAAAACTTTCCAATAAGTCATGTGACACTCTCATTAACCAGGTGTTTTTGTTTCAAAGCATCTCTAGGTAAATAAAAATGTGGTCATGA----GGAAAAGGCATGTGGGAGAGTAAGATACACTGGAGGAAGCTTCAGTAATCAGTCTCTTCCACCTTTGTCTCCTTTCTCTAAGCTGAATATATGATCTTCTAAATTGACTAGATAATTCTCTCAAAGACCCATATTTCTGAAGCAATGAGATTAAAGATGGGTTTGCTCTTTGTAGACTTGAGTTGGTCCCTTTCTGTGGGGAAAGGGGCAATGACTGGC-AGCAGTAATTTTTCATCATTTCTTCCATGCACTCAGCTTCAAGGCCTGCAGAAAGCTGTGCATGACCCAGGCCTTTCTATAAGTCAACTAATGATCGGCCAATCAACTGGAGAAAATTGATTTTGTCAAAACTCATGAAGAGCTGTGG-GCTGATCAATGTCTCACTGAAGTCAGGTTTCACACGAAACTGCCCAAAGCTGGAATTAAATGTCAGATACAATTTAACACTGATGGTCTAGCAGTACCTTTAGAGAGGGTGGCTTGCTCCTGATTCTGCCTTTCAGATTAAC-TCCCCATGGCATGCTCCCCAGGCTGAATGATCAGGGTCTGGCTCACTGCCACACCACAGGTCTCTCCAGAAGATAGACAATAGGGAGGACTTGGTACTTAGGTTTG-----------TGGATTTTGTCAAAGCTGGGAGGGAAATGCCTTGGAGAagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaTCTGATTTAAGTAAGGATGTTGCATTGAACAGGGAGCTCTAAATGGTAACTTTCCTTCTGGGAATACTGACAGGACCAGAGGACCAGAGGAGGACTAAAAGCACTGAGGACCTGGGAGTGGACTGCAGAGGGCCATTCTGCCATGCTGAAACTAGACT--ATGATTCCTGTGGGATTTATTTCAGCCCAGTGACTGGCACCAAGGCCCCATAATCCTTTTCATACACCTTCCAGTCTGGTTAAAATGCC-TTCCCTCAACCCAGTTCATACGTTCCCTGGTTCTTTTCTTGCCTTTTCCTCTTTATTCCCTGTTCTCTGTGTTAAATCCTGC
s HiC_scaffold_1 109332507 1797 - 233722169 TTCCCATTGAGCACTGAGGAGTTTATACCTCCATGAGGTGGTGAAGGACTTGTGGAGttagatgaggaagaggagggagacaaACTCAGACAAAAGTCTTATCAAGATCTTTCTATTTACAGATAACTGGAAGGGCTACTTATAACATTagaaaatttcttattttcctgGTGGGTGAGGAGGGTGCCTACACTCTCTGAGAAATGT---AGTCAGGTGACT--ACTTCCTGCAGATTGAAACTGTGTCTCTGGAGATAAAAACTCAGTTCTCCTCCAACATTGCTCCCTCATCTAAAAATTTACTTGTCTTGCTTCATGTTTACTGAAT--------------AAATATTGTTTAGTCAGTCAGGAAATACT-------------ATATGATATGAGATGGTAATATATATAGATATGCAAATAAATcagtatttttgtgtttctt---aaaatggAAACTCTCAAG-AACACTTT-------AATTTACCTCAGGAAATACTCCAAAGTCAATGACATTACAGCTGAATTACTCATTTATGGATACAATATTATTTTG-TAAGTGTTTAACATG-AGTTAGCCACTTGGTATAGAGCTGGGGACAAATGTAGTTATGGTTTCTGATA--ATATAGTACATGTTTTGGGAGAAGCAtgatttttagtttcttataaaCTGTATAATACAAGAAGTTACTCATTCTATTTTATAGTAGGGTAGTTATGCATTTAAAGCTGGGTTTAGTAGTTCAGAAACCTGTTCCACCTTCAAAATCCTTTGA--TGGCTC--------AAGCTTTTCCGTAAGTCATATAGGAC-CACACTTATTAAGTGCTCCT----CTAGACAACTCCAGATTAATGAATAAaggataataattttaaaagttggagACAAGAAAGCATGAT-TACAAAGGACAGTTTTAGTGAGAAGAATCTG--AACTATGCTCCCTTTTCCAAAACCAACTAGgtgatttctt------------caaatctatCTAAGACTAAGATTTCTGGCGTGATGAGATTAAACATGAGACTGCTCTTTCCAGAATCGCACTGGTTTTGTT------AGGAAGGGGCAGTTACTTGCCAGCAGcaatttttcatcatttcttccaTGCATGCAGTTTTGAAACTCACAAAAAGTTATGCATGACCCAGAGTTTTCTATAAATCAGCTAATGATCGCCTGATCCACTGGAGAAAATTGATTGTGTCAAAACTcatgaagagctgtggagctgaTCAATGTCTCACTGAAGTCAAGTTTCACACAAAACAGCCCAAATCTGGAATTAAATGTCAGGTATAATTTAGCACTGATGCCCTCTTAGTAACTTGGGAAAGGGAGCCTTGCTCCTGATTCTGCATGTCATATTAACACCCCCATGGTGGGCTCCCCTGGATAAGTGATCAGGGTCTGGCACACTGCCACACCACAAGTCTCT----AAGATCTGAAAAAGTGAGAACTTAGTGCTTAGAGTTGCTCTTTAGCCCTGGATCCTGTGAAAGCT-AGAAGAAAATGACCTGGGGAAT-----------------------------------AAAAAAGAGAGGCATTGGGTGTCAAGTCTGATTTTGTAAACGTTGTAACATTGAATGGAGAGCCCTAAATGTTAACTAT-GTGAAAGAAGTCCTgtc--------aggaacagagaaagactaa----------------gGAGGTATCAGAGGAGGGCTGCTTTTTGCTGTTAAGATGACACTTCAAGATAC---TGTGATGTAGTACTGTCTAATTTCTTATAGTAA-GCTCTGGCATATTCTTCACATGCCTTCCAATCTAGTAAAAACGCTAGTTGCTGTACATAATTCATGTCTTCTacgtgtcttttat----ttttcttctttggtctctTCTCCATATATCAAAGACTGC

a score=29012
s chr3            99484635 1335 + 160039680 CTTGCCTTGCTTCTTACTCAAGCCCTCTGTGGCTGCTCAGAAGGGTTATGCCAGTAACACAATAGCCAT-TGGAGAGAGATCCAGATATTTACTGAGACTTTTCAGGGGTG-----------TGCTAGAGTCA-----------------TTGGTAGATGTCAAAGATCTTGTAGAGTGGGGAGCTTGGAGAAAGAGTGGAAAGCGAACTGGCTCTGTCAAGTATGACATACTTTTAATAACTTTGTCCTCCAATTGGAGTGACTAGACGTCCTGAGGA--AAGTGTTTTGAGTGTGAGTAAAAATTAGAAGGGAGTTAATGGCACTTCTGAAT------TATCCAAAATAAGCATTTACACACAGGCACTTAATTCTGAGTAATTAATGTCTGTCTGAATAACACAGCGGCTTAATGAGGTGGGGTGCAGCAGAGGCACACTGAGTCACTGGAGAACCCCGGAGGGCTGGCTGTGAATGCAACCCCTCAGCTTGCCAGGACTTTTGGTAATAGCTGGAACATTTTTATAGGCGCATCATTACAGAGTTCTAGC--AAAGGCATACTCGCTGTAGGCAAGGTTTCATGTCCCCTATTAGACTGCA----------CATGTTTAGATTCATCACGACAA--TCAAC-TCTTCCAGTACAGGACTTTTGAAAGGCTAATGATCTGCGGTAGACAGG--CTGGGCTGAGGGAGAGACTTAGTTTCAAGATC--AGTCATCAACTATATAACTTGTAT--TGCCTAGCTTTATGGGTTATTTCTTCCACCTTCAAGTAAATCCCAGGGCATATTCTCCAGTCTCCAACATTTTCAT-CTGATCCGGG-TTCTCTTTACAAGGCACACTTTAATAGATTTTGGGTAATAATTACTG----ATCATTACAAGTT----TCCACCAGA--------GAAAGTGCTTCTTAGCAAAGGAATTCAACATACACACACATGTAGAAGCTCAGGCATTATGCTCATTTCTGGAATGTCAATGGATGCTCTGCTACACTCGTGACAGTTGTTTGAGAAGCAAAAATGGGTAAGAGATTTCCCTAGATTTAGAGATATT-------TCACAAGAGAGTAGAAACCGA-AAAGCAGTTGAGTAATAGAGCATAATCAGTTTCAGTCACAGAGTCAAGGTGATCTGGGGACTTATTAGACGTGAACCGACAACTGCAGTGGAGGAAATCACAG--GCTTCACGGGGAGCATGGCGCCTGAGTCAAATAGTCTAGTAAGGTAATAAGTATGTGATGTGTAAACGTAATACATCTGATAGATGAGGCCTGACAGTGTCTGGGAAGGGCAAGAGTTCTGGGCCTTGGGGCTCTCCTAAGCTC--TTGGAAGCTCTTGGAAGATGAAGTCT----TCAAAGC-------AGCAAGGAGAGTGGCTAAACCAGA
s HiC_scaffold_1 109361718 1397 - 233722169 CTTATTTTGCTTCTTAGCAGAGTCTTTTATGGATGTTTAAAAAGATTATGCCAACA-CATAACAGCCAGATTGAGAAAACTCCTAATATTTATTGAGACTTTTTCAAGACAGATATTACAAATGACTGAATTAATTTTGGGGAGATAATTTTGTTGGATGCTAAAGATCCTTTAGAGTGGAGAGctaggaaaaagacaggaaagc-aaCT-------TTATATGTGATGTGTTTTAATGAACT--ACTATTTGGCTGAAGTGACTAGCCTTTCCTAAGACAAAGTATTTTCAACATAAGTCAAATATGCAAC--AGCTAATGGCATCTTCAGATACTAGATATCAAACATA-GCATTTACATA-AGACATTTCATTCTGAGTAATTGATGCCTGTCTGGATAACTTGGCAGCTTAATGAGGCAGATTGTAGGAGGGGCACACAGAGTCACTGGAGAA-TGCAGAAGGCTGCTTG-GAGCACAGGTCTTCTGCGTGCCAGTGTTTTGGGTAGGAGCTGGAACAATATTTTAGGTATATCATTATTGAGTTTCAGCTTAAAGATGTGTTGGCCTTAGGCAAGGTTTCATGTACTC--TTATGCTACAAATACAAATGCATCTTTAAGTTAATTGTGACAACTTCTACATCTTTATGTGCAGAACTTTTGAAGGTATAATGCTTCACAGCACATTAGTATTGAACCAAGAGCTAGACTTgacataaaaactaaaattatttagGAGATAATTTGTTTGGTGTCTCCTTTTGTAGgccatttctatcctttttaagT-CATCTTGTGGCATATATTCAAACCGTCAAAATTTTCACACTGATCTGGACCCCtgtcaagaaaaaatattttgatagtttATCAATAACAATTACTGGCTTAGTATTACACCATGTGCTCTATTAAATTCTAGTTTAAGATATTGGACAGTCAGCTAATCCAAGGGAATGATATATGGTAAATTCCAGGTATTACATTCATTCATGACACATTGATAACTG---TGCTA-------GGTATATGTTAGAGAAAC--AAGTTAATAAGATATCACTCTAACCTTTGAGGTGTTCCTTGTAtcacaaaaaagacaagaaagatatAACAAT--AATTGTACAATACTCTCAGTTTTAACCACAGAAACAGGAAGAGGTGGTGATTTGTTACATATGCACAGAAAACTCATGTGAAGGAAACCACAGCAGGATCAAGGAAAAAGGGGCAACTTCATAAAACAATCTGTGAAGTTAATAATTGGGGAGTGTGAGCAGCCAGTATATTTAGAAGATGAAGCTGATTGTCCTGTGAGAAGGGAAAGAATTTTGG---TCAGGATTCCCTTGGACACAATTGATCATATCAGGTAGATGAACTCTCATCCCACAGCCCTGTAGCGCACAAAGAGTAACAAAATCAGA

a score=32238
s chr3            99492642 1416 + 160039680 GGTTCAATTACATTCTTAGA-ATGTTGTGATTCTCTGTTAGCTGGTGTCTTATAAATGTGCCATAGGATTATTAAAACTACTTTTTTTTTCCTGAGCACAAATACCTATGCCACTATATTCTCTTGATAAGTATTCTCAGGACAGGTAAGATTATATTTATTTCTTATCCATCTCTA----------------TAATCTTGAAGCC---TATGGGCACACTGTGTTCATCTAGCCA----GGGGCTG-ATATATTAACGCTGGGATAATAACTGTGTCCTTCTCCCTCAACATGAGGAATT---TATTTTGTGTGCAGAGCCCTTTGAGGTGTGGTGTCAGGTG-----------------CAGGAAAGTGGATATCAATAaataaaatatttattgagtgcttactatgtgtcaggcactgtgctaaTCTGGATTTATTCAAAGAATTAAGAGGAGGCTAAGGGAAAAGCCTTCTTCACTTAGAAAGTCTCTGAGGCTCAGTGACAG--GAAAGGTGAAAGCTGGGGAGAATAATACACTTCCAGTGTCTGGAAAATTATGAAGTATGTATTTTCATCTCTGTGTATTCCCCACTTCC-TGTCTCACTATCTCTTTTAATCTCATTTCTTCCTCTTCTATAAAATTCGGGCATTTTATAGCTCCTAAACTCTCACTGACCAGAACCAGCCA-GGTTCCCTGCACCTATATTTAGATTTTTAGCTCCACTTATGCTTATCAAATATCTCAATGTGTTATTGCCATCTCTTTGAGTTATAGCCCTCTCCTCAGGCCCATTTGTATATATTAATGCTCACAAGTTCT-TAGTGCATTTATcttccagagccattgaca-ttttaagaggcatcatatatatcataatgctttctttataaagaaaa-attcaagtgctca-tgctggtgttaagagtcactagcagattaccgagggagatttggatttttggtaagtg-gtccttctggaaactctcaaatcacacgtctgctggcaggcccctatttggttcagaggtaaaaatcaaccctACTCATGACTCATTTACTTTT----TCCCATGGATTCAATTTAAAAGGAACTTGCAACTGCTTAAATTACCTAATTTCCCCTTCACACTTTAATTTAGCAGGTTGCTGAAAAGG-------AAAAGTTTGTGTTTTAGACTCCGGGAATGGacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacaTTAC-ATGTTTGGGATATA-TTTTTGATGCTTAGGTGAC------------TGTCCAGATGATGACTTCTGTGTGCCCCCAATCAAAAGAATTCTTAGATGAAGGCCAT-------------TGAAATACTGGATGGTTCTCTGGA-TATTGGATTATGTTTAAATTTTCTTATAATTTTTGAAAAAGAAGAAGCAGTAATGAAAGGACAGGCCAACTCCCTGGATGAGCATGAAATTTAGG
s HiC_scaffold_1 109384062 1398 - 233722169 GGTACACTTACATTCATGTAGATAATGTAGTTTTCTATTAGCTTGTGTCTTACATTTGTGACATAGGATTATTAAACCTATTTTTCTT------ACTAAAATCACCTATTTTGGGAaatttcctttctatttattCTGATGAGAAG--------CATTtggtttttatcctttttaacaAATTACATAAAAGGCAATTGTGATACCACATGTGATCCCACTACATTAACCCACTTGCTGTGTGGCTGCATGTATTAACTCTGGGACTATATCTGTCTCCTTTACATTTAACATGAGTATTTTCCTACTTAATTTTCAGAGCCCCCTGAGGTATGGTGTTACTTGCAGGACATATAAACTGACAGGAGAGTGAATATCAAtcaatcaaatatttattgtgtgcTTACTATGTGTAAGGTATTGTGCTAAGCTGGGTTTAAGCAGAGTATTAAGAGgagttggaga--------ttttttttttttaagctattaGAGGCTGACTGTCAGACAGACGGGAAAAGCTATGTAGAATAATACTTTTCCA--GACTGGAAAATTGTGAATTAGCTGCATTCAGCTCgttggtttttttatttccttttcttgataagtcTTC---CCTTACATCTTTCCTTATTTTAA----CAGGCTCTTCATGTTTTTCCAAACTATACTATTCCG--CCGGACATGATTTCCTGCAGCTGTA---------CTAGCCCCACTTACACTTATTATAAGTATAATTTTA--GATGCCATCCAATTGGGTAACAATCTGTTCCTTAGTCTCATC--TATAAACTAATGGTGAAAAATCatctaatatatttatttatcataatcatttacatttttaataggcGTTTTACACATGACAATATTTTCT---CAAAGAAGCTCCTCAAGACCTTACTAACTGTCTTAAAATATTCT-GCAGATTAAACAGGGAGATTTAT-TTTTAGGTAAGTATGAACTTTAGGAATCTTTCAAATCACACATCTCGTGACAGTCagatattttattctaaaat-agaaTTGATTCTATTCACTACTTGTTCACTTTTGTTCTCCCATGGATTCaatttaaaa-gaacttttaatttcttaaattatctaatttctctttcaCAGTTTCATTTAACAGTCTGCtgaaaaggaatagaaaagagattgcattttagacttcaGAA------ACCCAGAGTTGCTTTGat---------------------------------------cacattttcctgtgtttgggattCACCTTCTAATGTGAAGGTGATCAGTTCTTTAGATTTCCAATAAATCTCATCTGTATTTTCCAAATCAGAAGCATTCTAATATGAATGCCATGCTGAAGTATTAATGGGATGCTAAGTGGATTTCAAAACTATTGCACTCTGTTAAAAATTgattataattttagaaaaataaaa----------aagacaaaagctaAGTACATGAATG---ATGAGATTGAAG

a score=50028
s chr3            99512533 2073 + 160039680 taaGTAC-ATCTTTAAAAAATGTGGATATTCATATGTAAATTACTTAACCACAAAAA-CTGCAGGACAC-AATCACTTGAAGGGCTGTGGATGCAGAGAGGTGGAAGGACATTAAGTACAGGCACACACAAACACAGTCTGTAAGGAGAAAAGTATTCATAATAAAAACA--TCTCACTT--GTAAAa---------------gaggtgc-cattaaaaatatttaacattcagtatggcccaggtacagaccaatcacaacagacactggctgGCACATGGCAAAGGTATGTGTTAACTGAGCCTG-----TGTCATTTCCTTACACACTCATGTTGTTGTTTCCTCAGGATAGATTCCTCAGCCTGTGATATCTGTCTTACAGTGAGCACTT---TTCTAATTTTAATAGAAATCACCAGTTGTCC----AATAAGACTGTAGTAA--CACAAT-TTTTCTAGTGATGCATAAGGGTACTCATTTTTTCCCACATCCCAGGAGCAGCAGAAAGCACATCCCCCCATTCCTTTGTTCAGAAAGATGTATAAGAT-------------GTCTCTCAGCTGGAAGTCTCAGCTGTTGAAAGAAGTGAAAGGGGCTTGTGGTTTCCAGGAAGGTCCCAGGCATTCTAATCTTAAACTTTGAATGCTT------GAGGTAGAATGTTGGCCAGCTGCTTCTGCCTTCCCCTTGTGTAATCCATACCAGCTCCAATTTAGACATTGTCCCTTCTTCCTAGGCCGAGGTGATAATTTTATTGCAGCGGATGTTCCTAGCTTTGAGGTATGTGTTGCCATTTAAAGCCTTTATCACTAACCCTGGAATTTCATGGTCTCTTTAACAAATGGATGCCATCATAACT---TACTATATTTAATAAACCCAAGCTCAAATCAGAAGACTGCAAACATGAGCACATTGGTGAGGGCAACAT-------TGATCGGTGGTGAACTTGTGTGAAAATAGCAAAGAAGAGAATCATCTCTCATGGAATATGAACATTCAAAACTCT----TTTGTGAATTT---------AACATG-------CTGAAAAGTGGGGACAGGTGCAGAAGAATCAACTATAA--GAAATCCCATCATGAATAATTGTATGCTTAATCAGAATAATGATTTATTCTTTTTCAATAAA--------CAAAAAATAAATTAATCTCAATTGTGAGCAATGGGTTTCAACT-------------CTTGAAAATTCACTGTATTCTGTGTTCTAAGAGATGATTACAGA--AATATCACAGTCCTGGCCCTGAAGCTACATCATTTAGAGCTTTACACAGAGAGTCCAA-TATGTTGCATGTGTTTTAGTTAAGTTATACAC----TGATA-CATAAGAAAGGGGATAAAGGTG--CTATTTATCATGAAGGGTCTCaggactcttgcaggtagtagcaatactaagtttactctgggaacagtgtgag-tgcgaataggtggaaggacagtctattctatacagaaggaaaacagtacaactgcataaaggcaggacaagcaaggcaggtatgggaaatgtaagtgcttagggatagttggagtgtgaagtgaatacag--agTAGTAATAAGAAGCAGGCTTAAAACTAGGTCAATGAGGGACATCCTAGGTCATGCTTAGGAATCTTGAGGTTTATCTTGGGGTGGAGGTGAGGACTCATTGATGAAGTAGACTGAGTGGTAATGACATTTGTCTTCAAAACATATCAAGAGCTTCTGGAGAGAAGGTAGATCTGAGAA--------TGTTGGACTGGAGAGAGAAACTCCTGTCAGTACATCTGAAAGCACCAGATACATCTCAACCAGGCTGTAAAGAGATCCTTTGGTGGATAGATGTTATCATGAGACCACAGGGACATGGTGGCACTCAGGT--ACCTGTGTCA-CTCTGGTCACCTCATATGGCTCATTGTGCTTACTCTCCAAGTCTGCCAGCCCTTATTTCTTCATGTTTCCATGAAAGCCAGCAAAGCCTGTCTTTACTAGACACTGGGGTAAGCAACCAATTGGACATT-AAGGGTGAATGAGTTACAACTTCATGATAAGAAGCCTAAGTTTAATTCTAAATT-AAGGCATATCAGGTAAAGTAT-TAGTTTAAAGGCACACTTTTGAGCTAAGTGGGGGTGCTATTCATATTTTATAACTAGAC
s HiC_scaffold_1 109393550 2113 - 233722169 TAAGTATTATTTTGCATAAATGTAGATATTTCTATGTAAATTATGTCAGTACAAAAAACTATGGAATATTGATTACTTAGAGGGACAGGAATGCAGGAATTTGGAAGGAGCCAAGATGCATGGACACACA----cagattataa--agaaaaatatt-ataataaatataaatctcatttaggcaaaactatatttatatatcaaggagtatattaaaaatatttaacaactgtTATGGTACAGAAACTGACCAG----AGCAGATGCTGATTAGTACACCGAATGGGTATGTACTCACTGAATATCAATCCTGTCATTTCCCCTCATACTTGTGTCTTTATTTCTGTGGGATAGATTTCTTGCAGCAGGACTGCAGGGTCACAGGGTATatgtaatttctaattttaaaagaaattgacaTACTTCCTTCTGAAAAGACTGGAGGCATTCACAACATTTTCCAGTGATGTATGAGA--ACACATTTACGCCCACATCCCAGAGGCAGTGGAGAGCATATC-----AATCACTGAGCAAGAAAATGTTCTAAGATAGGCAGGTATTCCGTCTCCCAGCTGGAAGTCTCAGCTGTTGAAAAGAGTGAAAGGAGCTTGTGGTTTAAAGGAAGGTCTCTGACATGCTAATCTTAAATTCTGACTGCCTTGTGCAGAGGTAGAATGTGAGCCAGCTGCTCCTGCCTGCCCCCACTGAAATCCCCTTCAGTTCCTCTTTGAGCCTTGGCCCCTCTTCCTGCACCAAGGTGATAATTTTATTGCTGTGGATGTTCCTATCTTGCAATTATGTGGTGCCATTTAAAGGTTTTATCATTAAACCCAGGATTTCTTGTTTCCCTCAGCAAATGGATACGATAATAACTTTCTACTATTTTTAGTAAACAAAAGTTCAGCTCAGAAAATTCCAGTGACAAGGGGATTGCTGTGGGTAATGCAGACTCATGGTCACTGGTGAACTTGTGTCGAAAGGGTAAAGAAGTGAATGATTTCTCTT----TATAGAAATTTATAGTTCTTTGGTTTGGGTATTTGTCCCACTGAACATACAAAACTCTTAAAAGTTTGAA-gggtatagaaaagaaaaatatagttgAGTTTTCAGCATGGCTGATGGAAT---------AAATAGTGATATATTTataaaggataaagataaaattaaaaaagaaattaaatgcagTTTTGAACATTGACTTTCATCTAACAGAAACATTGATTGTGAGTTCTCTCTGTTTTG-GTTCT---GGACATATAGAGATCCATGCTACAGTCTTAACCCTGGACATACTGAATCTGGATCTATGAATGGATAATTGAAGTATGTTTTTCATGCTTTTgttaaattgaatattttatgatattacaagacaagagaaaaagacacTCTATTCTAAATAAATGATCCTGGCACTGTTTCTGGCAATGGTGGAGTTAAGTTTATGCTAGGAACAGTGTAAGATGTAATGAGATGTAAGGAAAGGACATTcta-agagaaggaaaatg-------tgtaCAGAGGTAGG------------------------GCAAGTGGTGAGATACAGCTGGAATGTGAGCCCCACAAGGGCAGCAGTggcaagaaacagaataaaaagcagAATAATGAAGGGCCTTTTAAGCTGTGGTAAggaatttgaattttaatct--gAGTTGAGGTGACCAAATATTAATAAATCAGG-TAAACAATGTACAAATTTGTGTTTAAAATAGACCATG-GCCTCTGCAGGAAAAATGGAATTGAGAAATAGACTTGGTGGGATGAGAGACCAAGGGTCCCAGCCTTAGTGCTGCAAGCA----------TTTTGGCGGGAGTTGATGAAATCCTAGGGCAGG-GGAGGTAATTACAGTGT----GGGGCTCCTTTTCACACCGGCTGACTTCAGACGTCTCTTGTCACCCCACACTGCACACTG-AAGTGCTCATCA---CTGCCTGTTC-CATTCCTGCGTGTTTCTAT-----CTGCCGAGGTCTGTCTTCACTAGGGACTGGAATAAATGGCAAATTTACGATTGAATGGTGGATACTTCACAGGCTGATTTTAAGAGGACCACCCTTAATTCTAAGTTGAGGGCATTTCAGGTAGGCTATGTAGTTAAAAAGCCTATTTTGGAGCTGTGTAATGGTGTCATTTACATTTCATAGCTGGAC

a score=34044
s chr3            99515619 998 + 160039680 AAAAATTAGC-TTCCTTAAAAATACGTGTAATGTTTGGCTTTTAGGATGTGTGTTCTTTATTTTCCCATTTCA-AGACCAAGAATGCATATACTAATACATTTATTTAAAAGTGAATGCTTTCATGTCTAGTTAGAAAAAGAGAGTTACTTGTAGTTGAAG-------ATCAAATTTGGATGTGTGTTAGTTAACCAGTTAGCTGTGGCAAGGGCCGTAAGAATGTGTACAGAC-------AGTTCTGTATGTGTTCTCCATGGTCTCCAGACAGCCAGAATCTGTGGCTGGCT---ACAACCCTGGCATCAGCCTTCTCTTCTCTTTCACAGCTATAGCAGATGCTCGGCGCC--AGACGATGCGTGCCACCATAAGTTTCTTTCTACTCAAAACCATAAGATGCGTTCTGGCTCGGTTTCAGCTTCATCATGGAAAACCTCCTTCGTTAGAGAGGAGCTCAAGCTCCCATGATCTGAATTCTGGCTTTGATTTGAGAATTAAATTTCTAGGGAAAAAAAAAATGGACTGTGTGCCTTTGGAGCCT--TAACTTTTCATTTGTGTATGGGGCTAAAACTGAAATTATAACCTTCGACGATGTTCCTCTTGAATGAGTTTTGACCTGTTTCTACAAAGTGGGAAAATAAACTACCCAGCATGAGAAAACCAGT--CGGCATTGGAAAGCCACGTGGAAGAGCGAATGGAAAACTAACTTCTATGACTCGTAAAAATTAATGGCAGAGTGTGGCACGCAGCTGCCCAACTGATGAGAAGAAAGCTATATTGTGAATTGCTCGGGAATTAACTGCTGTAAGAGGAGACGGTTGCATGGTAAGAGTGGATTTGAGCTGGGAACATCAGAACAGAGGAATACCTGAGCGTTTGCCTTATAGCAAGGGGCTTTTTCTGATATGTAGATGGTTTTCGCTGTGGAAATATTTACATGGTGATGGCTGCAGTAGGTATGACTGTAGTTG-TAGTTAGACAGGGACACTAAACTATTCTTGAGAAAGGAAGGT
s HiC_scaffold_1 109397188 927 - 233722169 agaaattagcattGATTAAAAATGTG---AACGCTTCAGTTTCAGGA------------ATTTTCACTTTGTAGAGATCAAGAAT--ATATACtaataagaatatg-aaaatacagtttttgcATCTCTGATCAAGTAA------TTATTGACAGTAGAAGTTGCTTAATCAGATTCTG-TGTGTGTTAGT-------------GCAGTAACCGCCATGAGGACGTTTCCGGACTTTGAAGAGTGCTG-----------------CTCCGGA------------GTGTCTGGCTTGCACAGCCTGAGCAGCAGCCTT----TCTTTCTTATAGCAATAGCAGATGCTTGGCACACAAGTAGATGTTTGCCTCCTTAAGTTTCTTTGTATTCAGGACCATGAGATTCTTCCTGGCACTGTT-CTGCTTCATTATGGAG---CTTCTTCATTAGAGATGGGAGTAA-TTCTAGTGATCTGAGCTCTGGCTTTGATTTTTGAagtaaatttcaagg------aaaaatg---tgTGTGCCTTTGACTCCTACCATTTCTTCTTGTTTGTATGTGACTAAATCTGAAATTAtaagcttttattattttccccttgaatgatttttaacttgcttttaataaatgggaaaataacCTAACTAGCACAAGAAAACCAGTGTCAGCATTAGAAAACCATGTGTAGCAGCGAATGGAAAACCAACATCTACAACTCATAAAAATTAATGGCAGGGTGTGGCACACAGCTGCCTGACTGATGAGAAGGCAGCTATATTGTGAATTGCTGGGGAATTAACTATTGTAAGAAGAGAA----GCACAGTAATAGTAGATTTGAGCTTGTACCATCCGGGGagagaaatatttaaacatttgccTGAGACTCAGTGAGTTTCTTTGATACACAGA---GTTTCAGCATAGACATACTT-----GTGTTAATTATAGGAGTTATGACAATAGCTGCTGATTAAATAGAAAAACTAGAGTATTCTTAGAAAAGGAAGAT

a score=9951
s chr3            99525717 577 + 160039680 ATCATAAAAGAAATTTTAGGAGGAGAATTTGAATATGTA--TTCCAATGTCATCCATGGTGTTGGTCAAATGTCAAGTTTTAAGGT---------------------TTGGCAGAACAAATTATGGGATGGCAAATTCTTCACTTCAGAATGCTAACATATGGGTGAAGTTTTCTTTCTACATCCCTTAAGAAATTATAAAAAACCCAAACCATGAGATCCAGGCTATTCATATTTCCATAGCAACCCTCCCAGAGGGCTCTCAGCTGCTGTTAGGTAACTGTTTTTCCTGTGAACCTGATACTTTGTCTCTGTCCTGCCAGGACATTTGATGTGCCCCACTTGGTGAAAGGAAAATTGTAAATACCATCTTA----------GCTGTGAATCACTGGGGTGGAAGTCCCCTGCCTGTGTTTACCTAGCAACTCATGTAGTGTGGCTACTGTGGGGGTCCGCTACTGTGAACTCTGTGACCAATAGCAGAACTCTGCAGACTCACCTCTAGGGTCAATATCCAGTAAATGTCCTAAGCTTCCTCTTGGTCTGAGAGTTCATAATGAGAAAGCAGAATAGGTGTATCCTGGTGATACAAACTACATTAAAA
s HiC_scaffold_1 109416307 545 - 233722169 ATTATGAagagaatttta-----agaatttttatgtgTACTTTTCAGTATAATTAATGTCCTTGGTCTAGCTTCAA----TAAAGTACACATTAAATAAAGAGCGCATTGGCAGCACAGGTTATGGCGTGGTGAGTGCTTCAGTTTTGATTGTTAACTTACAGT---ATGCTGCTTTCTACTTTTCTTAATACACTT----AAAGTCAGAC----ACATTTTGGCTATTTAAAGCCTCA-AATTACCCTAACAGAAGAATCAAAGCTAATGTCAGGTAATTATTTTCCATGTTTGTCTAACATTTTTTCCTCATCTGCCGAAGTCATGAAATATGTTCTATTTGGTGAGATGTAAATTGTAAGTACCTTTTCCAACCTTCACTGCTGCAAATCTCCTAAGC--AAGATCTCTGTCCATGCTTATCTAGCAACCAGCATTGTGTTGCTGGGATGAGGGTTGCCCCACGTGAACTTTTCAATCATCAG------------GCCTGACAT---------AGATCCACTAAACATACTAAA--TTCTTTTCATCT-------------------CCAGAAAAGCCACATCCCAGGCACACAAACTAAATGAAAA

a score=58015
s chr3            99547171 2290 + 160039680 ATGGGATAGATTACTGGGAGGAATGGATA-TTGTATATTTTGTCCAGGCTGCGGGGAGACCTTTCTCCAGACTACAGAGGTAACAATACATAGAGCAAAGCTCTGAACCCTGCTCCATACTGTTTTAGTGAGCTCCCTACTGACTGCCAATCCCATGCTGGTGTCTT-ATTTCTCATCACACATGGCATAC------------AGTAAAGTTCGTGTGACAATAGTATATAGAACTGAGATTTTATATAGGTTTTTGTATATTGGCTTTTATATAGAACTGAGGTT----GTATATGGTTTTTTTTTCACAATTTTCTGTGAAGTTCTTGTCATCTATTATAGGTGACTTTAATTATACAGTGTTGGTTTTGTCATTTTTATCCCAAGAAAATAATT-TATAGTAAACTTTAAGAGATTTTGTTATTTTATTTTCCTACTAAGGAAACATGCTAAAATGCTTCACGAAATCAATATTAATCTAAGGACTGAAATATTGTTGCA------TGACAATGAGAATGAGCATACTTCTatttagtataaaataataatatgatataacaatataatataatacaaACAAGACAGAGGAGAAAGAACAGCTTGACTTAAGAAA-ATGCTCAACAGTTATAGTAACTGCTGTTGTTGCAGATGGTTTTGTGGATTTAAACAAAACTACCAATATTTGTTCCCAGATTGTTCCTTCTAACAGCTCCTACCTTGGCTCCATCTCATAATTGTTCAAAAGGGGTTGCATAAGTAAGTGTTGTATAATGGTACTGATATGTGTTTTGGGACTCCAGGATATTATTTCTTACCTTCTCATCATATTTCATTATGGACTTTGATTTTTAGAAAAGCAGTGACCCCAGTAAAGTGGATCCCCAAAGCAACCCTGATTACTCCAGACTTGGCGGAGCTCCTGGAAGTATCTCTGTATGAGAAACTGGAGGTGGGTGAGCTCACAGAATTGGCAAGTGGGTGACTCTGGATCTGAGGGTGGGATAACAAAGGAGATGTTGG--------CATGGATTGATGAGGGGGGTCAACATGAGAAGGAATAACTAGATTCTGTGAACATGGAGGTAGTCAATTAAA-----------AGCATTGCTGAA-TTCTGAAGCTTATTAAATGCTGGTGAACACAAA---------AAGGCTATAAATACATCCATAACTTGAAGCAGTTAGACTAATTTTTTCAGTCACAATCTGGTCAGTTTGAGATAGTTTGTCTAGACTGCAAGCAGTTCCCTGTTGTTTTTCTT--------------TCTGAATCTTAAGAGACATCTAAAAGTC----------------TGAGACCAAGGAGTAAAATCAAATTTTAAAACATTGGTCAATAGATAAT-GTTTATATGTTTTGTCCCTAAACTTGAATCTAAAGAGAAGACCAAGTTGTTAAC----TTA---ATTTTTCTATTCTTACATTTCTTCAGGTTGGTTGGGTCATATTTTTGGAGGATGGGGAATCTAAAGTTTCTTTAGTATATTGGGCATCTGGACATCTGGAGAAGAAATTCATCATTATTACTTTAATTTCTTTTTTTTTTCCTGTCTGTGTCCTTCCTAGGAATGATTGTAAAGAGTTCACAAAATATTATAT----TTAGAACAACATTTAGACATGGGATGGTGTCATTTGATA-TGTCACCAAGACACATTTGAGGCCAAATGCT--CTAGCTACAACACTATACAGAGCAACACACTAGTAGGCTCTCTTCTCCTGGCTAAGATGAAAACATTTTCACCCAGCATCTAACACGTTGTCTTTGGCACAATGGAGGTGAGGCAGTGAAATATGAGCATAATTGACTCTGAGTCTGTGAGTCTCATTTTCTTGGCTTTGTCTCACAAGCACCCCACAACCATCCACTAGCCCTCCAGTAC--TCTGTTCAGTTTCCCACCATC-TCTACATA-----GTTTCTGTAAATTCACACTTTCCATTTTAACAGCCAGAATATACAAATACTTTCCAATTGACACTCAACTTAGAAAGACTTCTTATTTTTGAAGAACTGGGTGGAAGGAATAAAAGTTGTGAAGACTGAAGCCTAAGGTTTTTAGGATTTAAATTGGATAAGGATAATATCACCCTCA-AACTGAGTAACTTCTTTTACCATAGTTGCAGG----TGGCTTCTCAGTATGCCTTAATTCGAGCACAACTGGAACATATGAGATACCTGAAATGGCCAGGAACTTGAGTCTGTGGCCATACAAGGTC-CAGCTTGATGTGAAATACTTGGATGTATGAAGTAGTGGCAGAAATTTCTTGGAGGGCTCCAAGATGAAAGCCAAGGTT-AATCTTTATTTTCTGGAAAAAAACTACTGACCTTGGCTCagaga
s HiC_scaffold_1 109434865 2215 - 233722169 ATAGAAGAGTCTACCAAAGGAAATAGATGCTTGTAACTTTTGTCCAGGTGTC----------------------CAGAGGTGAAGATAGAGAATACAAAATTC--AATCATTTAC--TAATGTCC-------CTTTCTAATGACCATTTTTTTGATGTTAGCAACTTTACTTTTCATCACACAAGACACAATACCACTGCTGAAGTTACATTTTGGATATGATAATTTAGAG--------TTTCCTACAAGGTGAGATATAGTCTATATTCTAAAGAATATAGACTTCAAGTCTATATTCTATTATTCA------TCAATGAATTATtt--------ttgcagaaaatttt---taaaaag-------------aattttattctaaaataataacTATACAGTAAGTATTAGGGATTCTTGTTATGTTATGCTCCAAAAATTCAGACATGCTAACATGAGCATTGATATT--TATCATTCTTTTGGTTGTA-TAATGTTACAACTAGGCTATATTGATAATAAGCATactattatttaatataaaa------------------------------ataggcA--------GAAAAACAGTTGTTTAGTTTGAGGAATATATTCAATGGTTGCCTTAACTTTTTCTATTGTGAGTGGTTTCGTGTCTCCAAACACAAATGCCAGTATTTGTTTACAGCTTGCTTCCTCTAACAGCTCCTACCTTGGCTGCATCCCATAACTGTCCAAAAGGGGCTTCATAAGGAAGTGTGATGTAATGGTATTGGAATGTATTTTGGGACAATGGATTAGTTTTCCCTACCTTCTTATCATATTTCACTGTAGACTTTGAGTTTTAGAATAGCTGTGA-CCCAGTGAAGTAGCTCTCTAAAGCAGACCTGATTATCCCAGACTTGACAAAGCTCCAGAAGGGATCTCAGTGTGAGAACCTGGAGCTGT----ACTCACAGAATTGGCAGGTAGGTGTATCTGA--CCTAGTGTGAAATAACAATGATGATGCGGATAAAAGCCCATGAATGGAGCACAGCGGTCAACATAAGTAG----AGTTTGTTTCTATAAAAGTGGTAGGCGTAGGTAAAGATGTCTTTTCCAGAAGTGCTGACTTTCTGAGGTTGATGAAAATGGACTGAATAAACAATCCAAGTGAAGTCTATAAAAATACCCAAAATATGAAGGAGTCAAAACTGATTTTCCAGTTACAAACAGGTCAGTTGGAGCCACTTGGCCTACATCTCAAAGAGTCCTCTGTTAGTCTAATTAAACTGCACCCTCCCCCAACACTTGCAAGGGATCTAatagttttcatatttaaaaaagtTAGAGCAAGTAGAgacaataaa-actaaaatgttgTTCATTAGATAATGGTTCATGATTTTTGTTCCCAAATTCTAATCTCAGGGAAAAACCAAGAGATCAACGAGATTAACCATCTCCCCATTTCcacttttcatatatatatatgtatc----ttctGGAGAGTAAGGA----------------------TGGG---------ATATAAGGAAGAAACT-----TTAGTA-TTTAATTACTTTACCCT---CTATTTATATCATCCCAAAGAGTGACAGTGAGAAATCAGCAAACATTTACTTAATCTTGGAACTATGTTTAGGCTCAGTATGGCGTTATCTGATAGTGCCACTGAGACTAAATGAAGTCCAAATGCTTACCAGCCTCATTACTAAATGGAGGAACACTCTACTAGGCTTGCT--TCCTGGCTAAGACGAAAGCATTTTCACCCAACATCTAACACATTGCTTTTGGCCCAAAGGCCAGGAGAC--TGAAATTTGAGTATAATTGACTCTAAGTCTGGGAGCCTCATTTTCTTGGCTCTGTCTCATAAGCACCCTattctcatttgttgattctcctTCACTTTCTACTACATTTCCCATCATCTTCTACATATGAGGGTTTTGCTAAAATCACACTTTCCACTTTAACAGCCAGGATATACAAATACTTTCCAGTTGACACTAaactt----agattttttaaataaaaataactatat----tgaataaaagttacaaagattgaagtttaagatttttaagacttaaattaaataatgataa-attattttcacAACTGTATAA---TTATCACTAT-GTTGCAAGGAACTGGCTTTTTAATGTGCCCT-ATTTACATATAATGGGAACTCATAGAGTACCTGAAATTATCAGGATCTAGA-TTTGAGTTGGGACAATGTCTTAACATGCTGTGAAACAGCTGGGTATGTggaatgatatcacagagttcttgAAAAGCTGC-ATAGGAAAGCCaagattaaatgttttatttttgaaaaaaaa--aatcacaatggccTAGAAA

a score=5498
s chr3            99554841 181 + 160039680 TCTCTATTTCGGGTACCTTCTGATAAAGCCATAAAATTATGAATCTATCAATAGTTCAACCTATTTATGAGCTAATGTTCTCATAATTGAAATATTTCTTGACAGAACCCCCAGTGAGAAGTC--------------AAGCCCCCAGCAGGCAAGCCTTTTGGGACAATACCTTATATACAAACCATAACAAGTT
s HiC_scaffold_1 129652905 193 - 233722169 TTTACATTTCTATCACCTCCCAATAATACTATCAAATTTTGAATCTGTCATTAGTTTAATCTTTTTATGAGTGAGCACTCTCACGATCCAGACACTTTCCCCCAAAGCCCCCTCTGAGAAGCCTTGCACTGGGGACAAAGCTCTCAATACATGGGGCTATGGTG--AATACTTTAGATCCATACTGTAACTGGTT

a score=74313
s chr3            99562424 1959 + 160039680 AATTATTCTGCCACAGCCAGAAAGGTATGTCCCTACTTACACAAAAGCAGAAtaagatgtgaattgccaggtatta-cctctaaag--actgattcaatgtgtctgtgtggggactcagaaGTCTTAGGA---GCATCCCCTCCCTGTTCTAGTGCCCTGATCATGCTTGGGTAGAGA-GGATAGGGTAATAATACCATCTGACATTTATAT-CATTGTGATGAAAGTCATATCAGAGGCCAAAATATCAGCATGGATATAACTCAAGTAATTCAGATAAAGTCAAGAAAATTGACCAGCAATAGCAGAAATGCAAGCCTCTTAGAGACTGGCAGAGATCTGTTTGGAATCTTGGACCACAGAAACAATAACAAAAAACTGCTGTTTGAAATAGTAACTAGAAGTAACTGGAAACAGAAGAGGATGGTACTCCAGCCAGACAGGGAAGAGGCTGGTCA--TCACAGGTTAAGGAGACTTGTCTCTAGCTTTGGCCTCTGGCCACACTCAGCATAGAACTTGAGTGCAGACTCAAAGCCACAGGGACATGAGTCTCCTATGAGGTCTGGTGCCATATTTCTCACCTCAAGAGTCTTGTGGCCAAGTCCTTCCAA----CTCTGGGTTTTGCTGAGCAGAAGGGCCAGGCTTCTTGGCAGTTAGTCCTATTTA-----TGTCAACCTGGTTTTGAGAGCTGTCTGGAAGAGCAAAGGGATTTATTGCTGGAAGGAGATGAAAGATTGGAGAAGCCATAGATCTTACCCAAAGAGGACCTATTAAAGACATTTTGCCTCATCATAGATGGTCTCCATGCCAACTTGTAAAATAAGAACATAGAAAGTTAGATTTATAAAAAGACAGAAGGGCGTATGAGAAGATATCAGCAAAGGCTGCTTCCCCAGAAGGTACAGATAGAATTTACACAGCTATGCTGTCATGTCACAACTGCCATTCAGTAACTGACAAGTTTTGTAGACTTTTTCTTAC--ATCTTTCACTGAAATAGTTTTCCCAGAGACTGATTTCCTGAATGCTTGAGTTGGCTGAGTTTTGCCCCTTCCAGGTAAGTCACCACATCTAATCTCAATGTAGGTTTCAAAGGCAAAGTTG--TGAATAAGTAGGTACAGACCATTTTCTACACTATACAAAAACAAAACAAAAACAAACAAACAAACAAAGAAGCCCCATCCCACCCCCATAGACACACAAATCACCGCTTAGTTAGCTACAGGTCCAAAGGTGAACCATAGGTTGTAGGTCTCAAGTCCCTCTGGCCCATT-TCTGTTTTTATAAGTCCCCCAAAGAATCACTTCAATATTATACATCACTGTCCCGGGGAGTGCCTTTACTGGATTCCCAGAAAAGTTGGCATTGAGGTTCCCTTGTGGC-ACCCCTC------CCTGCCTT-----ATGCATCTAGTTGCCAAACCTCACTGCAGGGTACATAGCAGGAGGGGGTGAGTAGGGTGCTGTCATGTGGAATCACAAATGAAAATATCAGCCAGTTCTAAAGGCACCAGATTATCTCCCTAGTTCAAATTGCCAGCCCCTGTCAAGGAGTGACTCGGTGTTTCCTGATGTGTTGAAAGCAGCTCTACGATGAAAGGAAGATAATGCCCCCATCCAGCTGAAATTCTGAACTGGATACCCCGGGGGAGGTTTGTATACAGTCTCTGGCTCATCACGATAAAGACTGGCTGCTGACAGCTCACCAACTTTGACTTCTGGCGAAGACTGCAAGACTGC-CTTTTTCCCTCCCATCAGCC-CCTTCTCCCAAGTTCTTCCATCTCTCCTTTTCTACTTATTTCTTCCATT----ACTTAGAAAGAGAGGGTTTACCTTTGTCAGAAAGCAGCTCTATGCCCAAATTAGCA---TTCATTTGCTGATTTACCATAGCCAATTTGAAATCTTTTTGTTTCTAATATTTACAAAGCAGTTGGCAGCTATTGATTACTGTGCAGAAAATTGGGAATGTAGAAGTAAGTAA
s HiC_scaffold_1 109449050 1893 - 233722169 AGTAATTCTGCAATAGCCAGAAGAAGGAGTCTATCTtggtacaaaaatttaa--aacttcaaattaCCAAGTCTTAACCTACAAAGGCACTGACTATATAAGTCTTCAGTAGAAATCAAGAATTTTCGTATTAGTAATCCCTTCCTTTTC-------------ATACTGGAGCAAGGAAGGATTGTGAAAAACTGCCATCTGAGATTTGTGGATACTGAGATTAAAGTCAGATTAGAGGTCAAA-TGTCAGCAGAGCCATAACTCAAATAATACAGATAAAGTAAAGAAA-TAGGCCATTGGAAGGAGAAACTAAAACCTTTTAGGGATTGGCAATACTCTGATTA-AATCTTGGACCACAGAAATAATA--------TTACTGCTTCAAATAGTAACTGGAAGTAACTGAAAACATAAGAGGACAATCTTCATGCCAGAAGGGGAAGATACTGGTAGATGCACAGATTAAAGAGGCTTTGCTCCAGCTTTAGCCTCTGGTCACTCTCAACATAATACTTGAGTGCAGACTAAAAGCCA--GAGACATGAATCCCCTGTGATCTATGGTGCCACATTTCTCACC-AAAAAACTTTGCAGCCAAATATTCCTCAGCCCCTCTGGGTTGTTCTAAGCAGAGCTGCCATGCTTCCTGGCAG---ATCCTACTTAGTTCTTGTCAACCTGGTTTCAGGAACGGTCTAAAAGAGCAAAAAGATTTATTGCTCAAAGGAGATGAAAGATTGAAGAGCCCAGAGATCTTACTCAAAGAGAACTCACTAAAGATATTTTGCCTCATCAGAGGTTATCTGCATGCCAACTTGGTAAAAAGGAACATCTACAAACAGATCTATATAAAGACAGATGGTAG-GTAAGAAGACACTAGCAGAATTTGTTTACCCTGAAGTCACAAATAGAATTCATACAGCTATGTTGCCATGCAATAATTTTAATGCAATAATTGGTTTTCCTCCCAGACCTCGTCTTATGAATCATT-ATTGAGATGATTTTTTTGGAGAATGATTTCCTGAATTCTTGATTTTATGAAGATTTCTACTTTTCCTTAAAGTCATCACACCCCACCTTAAATTATGCTT-GAAGGCAAAGCTGGATGTgtaaatgtg---aaataattttctaCACTTTA------------------AAACAG-CAAGCAAGG---------TTTACTC--------------------------TTACCTATGTCTCTAGAGGTTAACCTCAGGCTGTAGCTTTCAGATACCTCTGGAGAGTTGTCAGTGTTTTGAAATCCCCACCAGAGCCATTCCTTTAT-----------GTTTCTAAGAGT-TCTATATCAGAT-CCCagaaatgctggcattacagttCCCTTGAAGCCGCCCGTCAACAATCCTGCTCTCAAATATGTATCTAGTTGCCAAACCTCACTGCAGGGTACAAAGCAGAAGGGGGGATGGGTGATGCTGTCATATGAAATCACAAATGAAAATATCAGACAGTTTTAAAGGCACCAGATTATCTCCACAGTTTGAATTGCCAGCCTCTGTCAATGAGTGAGACAGTGTTTTCTGATGTGTTGAAAGCAGCCCTGTGATGAAAGAAAGATAATGCCCTTATCCAGCTGAAATTCTGCACTGGATACCAT-GGGAAGTTTTGTATACAGTGTTTGACTCATCACAATAAAGACTGGCTGCTGACAGCTCATCAGCTTTGACTTCTGGCTAAGACTTCAACACTAAGATTTCTCCCCTCCACCAGCCTTCTTCTCTCAAATTCCTCCatctctcctttttta---atttcttccatctACGGTTTAGGAACTGAAGGTTTCCCTGCGTCTGAAGACAATCATGGCGCCACAGAAGCATTGTTCACTGGCTCGTTTTCTGTA--CCATGTTGAGCATTTAGGGTTCTAACACTCGCAATATAGCTAATATTTATAAATCCCTGTGGTAGATGCTAGGGATGTAGAGACAAACAA

a score=10536
s chr3            99568833 560 + 160039680 TTAGTTACAGCAGTCCAAGAATGCTGGACTCTGTCCTATCACATTCCCCATTACCCGTTTTCTTATTCTATTGACTTTAACAGCTACTTATATCTAATTAATGTATTTAAGTTTTTGTTGCTAATCTCTTTTTCTTTTACCCATTACAGTATGGGTTTTAATAGTGTTCTGTAAGTGGCTGATAACATCTAACAATGTTTTGCTTCTCTTCTGTCTGAAACTTTTATCTCTCCAATTCCAATTCCATCCAT-GGCTCTTAATCTCAAGTCTCTTGGTTCTAAAGATGGCTGCTTCCCTGTTTTCCAAAGCTGACCATTGGATCCCTTCACCTGACGGTACCAGTAAAACATCTAACACG--TAGTTTGACTTTTTGAATTTCTTATCTTCTTTGAGAAAATCATTATTTTTCTCTTTTACTCATTGTTCTGAAGAATGATACCACCAGATATGTGGTCAAGAAAGCTAGAAGTGGGAATCCCTCAAGGGTCCTTTCATTCCCTCCCTTTCTGTATTAA-TTAAAGAACACATACACCGTGATTCTCAGTATCAGCCTTTAGGAT
s HiC_scaffold_1 109457613 447 - 233722169 TTTGTAATAGCAGTCTCAGAATGGTGAACTCTGTTCTACCACATTCCCCTCCACCAATTTCCTCA-TCTACTTGCTTTAATCACG--TGAAATCTAATT-------------------------------------------------TTGTGGGGTTTG-----------------------------------------------TTTCTGTATAAATC--------ATCCACTCTTATATTCATCTATAAGCTCTTAAACTCAAGTTTCTGATCTCTAGGCAAGACCTCTTCACTGATTTCAAGAGCT-ACTA----AACTGCTCACTTGATGGTACCAGTAATATATTTCACACATTTATCTTGAATTCCTGAATTTCTTATCTTTCTTCAAAAATGCAT--TTTCCTTATTCCAATCATTGTTTTAAAGAATAACACCA-TACTTACGTAGTTAGCAAAACTAGAAATAGGCATCATTCAA--gttgttctttttctctactttgcACATTAAGTCAAAGAGTAAATACGGCATATGTCATAATATCATCCTTAAgagt

a score=142605
s chr3            99571759 4661 + 160039680 [encoded data, 5268 characters]
s HiC_scaffold_1 109459802 4967 - 233722169 [encoded data, 5268 characters]

a score=23394
s chr3            99578641 746 + 160039680 AAAAAGAATAGAACACTTAGTTTCTGACATATAAGGGAAAGTTTTAAGATGTTGTCACTTCAATTTAATTGATAGG---TCTGCTCCTGTGTGTGGAACTGAAACTACAGTGGGGACAGCCAAATACTATT-GACTAGTTGCTGACATTGTTATACTCTTGCTAGTTGACCCATTTTAATTA--TCAGCAACATCAAATTGAATTATATTG-AAGGAATATACACA-AAAGAGAACAGTAAGTTTATTTGTTCTCAAGATCCTAATTATAATTGGTTCTCTTTTTCCAATGTTGCAGGAGATGTACTAACATGTTTTATTTGTAAATCTGGCTTGTGGTTTCCTGAAGCATGTAGCATGGCTCATTAAGATGAACTTACCTACAATCTTGTGAAGATTTTTAGATGGATAAAACATGCATCATCATGTCTAATAATCTTATTTCCATAGTAATTTCAGTTTATTTTCTATTTATATGGCATACATGGAGAGTCTGACCCATTGAGCCTAGACATATCCATCT-AAGTGACATTTGATTTATTTGGCATTATATATTTAAAATGTTATAACTTGAAAGTGGCAATAA-ATATTTTGCTGACATGT-AATACAAAAAG----AATCCTCAAGTAAATGCATGTTTAAAATGAATTTAGACAAATTCATAGCAGTGAAACAGCATCCTCTCTAGTTAGCCATTTGCTTATGTGTGATGCAGTAACTATGGTA--ACAGGCTAAAACTG------------AGATCAAGAAGGATAATG
s HiC_scaffold_1 109466347 749 - 233722169 aaataaaatagaatacccATTTTCTGCTACGTTAG--AAAATTGTAATATTCTGTCACTGAAAGTTGATTGATtggaaatgttctttttt-tgtagAACTGAAACTACAGTACTGACA---AAATAATATTTGACTAATTGCTGACATTACAATAATCTTCCTAGGTGGTCCATTTTACTTAATTGAGTAGTTTGGAACCAAATTATATTGCAGGGAATTTATACAGAAATAGAGCAATGCATTTATTTGCCCTCAAGAATCTCATTATAattgattctgtttt--aaaagttacaaGAAAAGTGCTAAGGAATTTTGTTTGCAAATCTGGTTTGTGGTTTTA-GAAGAATTTAGCTTCACTCATTAGGATGAATTGACTTACAATCTTGCAAAAACTGT-AGATGGACAAAACATGCACTGCCATGTTAACAAAGTTTATTTCTCTAGTAATTTTGATTTAGTTTAAGATTCTGTCACATGACTGAAGAGTCTGACTTATAAGATCCATAAATATCCTTGTCAAATAACATGAGATTTA-TTAGTGTTAT-TATCTAAAGTTTGCTACTTGAGAAGTCATTATAAGATACTTTGCTGACAcataaataagaaaagtaaaaattttc-----aatgtattttta----gagtttaaatatattcata-----aaaaccTCATCATTACAAATGGGCCTGTTGCTTATGAGTAGtcacataattataaaaatacaacttaacacTATCACAATTTTATATGTCAAGAGAGATAgtg

a score=36244
s chr3            99579857 2830 + 160039680 GTGCTAAAAAAAGAAAGGAAAAAA------------AAAAGAAGAAGACAACCAGCATCTAGAGAAAGATACAGGATCAAGAGAAGTATT---TTCTTTTGTGTTTATTAGAAACATGTATGTTCCATAAGAATGATGACGATAACAAAGGACATAACTATGGAGCAGGTCTC----TATGGAAAGAAGGGGATCCAATGCAAAGCACAGGTGGAGAGATTGCTCTGGGATGAACAAAAAGCCTATTTGCTGAAATGAAAAGAAATGGGGCCGGGGGCGTGGGGGGATAGA-GGTAGATGAGTCTAGGGAATGAGAAACCGGAGTTCACA--TCAATGATAATCTGCTTCCTGTTTGCAA-ACACACAGT-----------AATAAGTTACAGAATTGGAACATAGCTAATTGCTATCAT------GGAAGTAAGCA------------------------------------------TAGAGGC----ACAGCATAG------GTGTGGCAGA--GTCAGACAAGATGAA---------CTGAAAGATGAAGGGGT------------------------------------TTTTAGACAGAGGTAGGAGCATCAGATCTTCTGGAAAGA----GTTATT--CTCTTTGTTTCTTCCTCTCGAAACC--GTCCTCCATAGCAGTCT-------GACGATAGCAAACGGACTGCCTCATCC--AGGCATTCTGACTTAGGCAGGCTTGCAAAGAATGACTGCTGAACAGTTAAGTGG---AAGCAAG--AGAAGGAGGCGCTTGCTGTTGCTTCCTGCTTGCTTCCTGATGTCACCATCATTTCTCGTGGTAGCTAACCATTTTCAAGTCTGCAGCTCCCCGGGAGGAAGCCTTCCTTGTGTCCTGCATCTCACATTCTTTCTGGGGTCCATAGAAATACTTCTCTACCTTATCTCCTTAGGGATATGG-TGTTCATAT---TTTCCACTGATCTCTTCACATTTTAATGTCTCTCCCACTACCCAATGACTCTCTTACCTGGCTGGAAGAAGTTGTTTATTACCTGGCTTTCATATAGTCGCCTTAAGTCCATT------CTCTTGCTTGCTAGA--TGTTGTACC-------------AGACAGTGAACATGGCATTGTGAG---------AAATCCAGTAATACCTAGTGGCTTCAAAGAGATTCAATAGAGAAAAGCCATTATCTTCCAC---------------------TTGTAGAGTCACA------AAGACAGAGAAAGGTTTTGCCCTAAGCAGAAC-ATCATTTGTTAAGGAGAAAAATGACTGATACTTCAGACACATATCTGAATTTTGAGATGGCAAGTGCAGAAGCAGGCTGAAAGCGCTTCCTCCAAAAGCAGGAAGCCAAGG-----CAAACAGTACTGCAAGGGTTAAAATGTAA---AAGAATAGCGACATAACAGAAACATAAAGCAATAATAACTATCATCTATT-GAAGAAAATTGACCGCAGGTGGCCTTAATCTGCTGGG-GGTGGGAACGGGAAACTCTCTATTCTGTTTATCATGGGCCAATTATTTTGGCCAGAAACCAGCATTCATTTTCTCCCTTCTTTGTTTGCTCAGGTTTTCCAGCTAGATCATTTCTGTGAAAAGCTTCACCAGTGTTTATGGACAT-TCACACT-AAGAATGACAGCAAGGGGCAGACTTCAGATGTCAAAAACAGGGTGTAAGG---AGCAAAGGAATG-----GCTTCTTCTGTGACGTATGGTGAAATTCTGTAGATGTCAGAGAATGTAGG-AAAGATGGAAGCATTTGAAGATGAAGTTCATGCGTCTCGTA----TTACTTTATAATGAGCCCAAGGCAACC----TTTTTATTTCTTGAATTT--------------------------------------TCTTTATTTTT--------------TTAAGTGTTAAATGTATATGAAACTTCTACACATCATATATGACAGAAACAAAATAACACTTTTAAAATAGAAATCTCTCTCATTCCCATTTTCTCTTTAGTTCTCTACAATGTAACTTTCATAAATTCAATGTATATTG--TTTATTCCGGTTTTACTAA--------ATATTTAATTAATAACCAGTA-AGTAATATA-----------------AAAATTTAAAAACA-------------------TTTGCACAAATGCTTTCACAAAACATGCATTTAATTTCATCTTGTTGTTTCAACTTAACCTCATTTTGCAGT-ATC-TTTCACATTGATAGATATAGTCCAAAACATTGAAGTGAACTGCTATATGGagccttattcaaatagcatctttcaatttaaccacagaaaccaagtctgcatgactaaagatgctaaa--tcgtcaatcctcccgaggacaatacataggtattgctctacacatatagc-------------------aaacaatgagttcatcaTCaatattttcatataaatttcatatttatatatttat----CTCTATATTCATATTCACATTAATATGtatatctatat--------acttatatttat----------------acttattatattcacattcatgtttatatttatatattatatgtctaataatatataaaataatatattatttatgtatagtgatatataaataataaatatatgtaaatatattaatatataaaatata------ttggaatatat------gcat-atatatatTCC-AGTATATGAATCTAGAAACTAAA--ACTGAATTCTGGGATAGAGACTTCTTTAGCCTTA----------CCAAATTGAGCTTACAAGTAATTGTACTAAGATAATCTTCTAAAATAATTTAACACTCGAATTTAACATTTGGAGAACTGACCCATCCCCCA-ATTAGTAACAATATTTGATATTGTCAGACTTCCATAGTGTCAA---ATAACATGATTTATTTTATTCTTTTTTATTATATGTAAATACAAG-------GTGCGGTTGCTGGCTGTGTATAAATGTTTCTTCTCAGAATTTTTTGTTCACACCCACTGCAATTTTCCT-ACTGAGTCATCACTCCAACT-----------TTTTAATGTGGTAGGGA----------------------TATGCATGTTCCAAGGTTGGATCTATGCTGAACTT-TGGCTGTTATCCACGTTTCAGACACTCTGTTCATTGTATTTCTTTGCATAATACAAAGTTTACATTTCTTT
s HiC_scaffold_1 109468032 3093 - 233722169 GTGcaaataaaagaagtaagacaATCAGATGTTGGGGGAATAAAAAGGAAGCAAGCAACTAGAGAAAGCT---GGAGCAAAGTgagtattcattttttttatataaGATGGGATTATAGACTGTCTGTAAGGAAGGTGAC-ACAGAAAGAGAGTAAGTAATGAAGCAA-TCtcaggacagagacagaaagagatgaGATTCGGAGCACTGGCAGTTAGATTCTTCTGCATAGGGGAAGCAAACTATTCGTTGAAActgaaaaaa-----------ggaaggagagaatagCTGACAGTGAAGTTTA---AATTGGGAAACAGAGTTCATGACTCACTGACAATCTGTTTTCTGTGTGTAGCAAAAACAGTTGCTAGTTTTCCATGAATTGCTGAACTGGAACACAGATAAATGCTATTGCCATTGAGAAAGTAAACAAACTTTATTCTGTATTGTTGCAATGGTCATCCACTTAGATGTTAAAGGTGCGTACAGCATGGCAGGGATTGTGGTAGAAAGtaagacaggaaaaaaataacgTTCAGAAGGAATAAGGAGTGGTGTATTAGATATGCAAATTTAAACGGAGGCaagtttttatataaatgtgGAAACATCAGACCTTCAGGGATGACATGGTTATTTCCTATTTATATCTTCCTACAGAAAACCAGTTCTTCTTATTGACCCAGGTCAGGGCACTAGAAGAT--CTTGCCTTACTCCTGAGCCACCTGACAC-------CTTTC------TGACTGATGG---GTGGAGTGGCCAAAGCACATCATAAGCAGGAACTT--------------CTTGCTTCTTTACATCAGCACTATTTGTAGTAGCAATGGAATCATTCCAAGAATATGACTCCTAAGAGGTAACCCTTCTTTATGTC-------TCACACTCTCTTTAGTCTCTGCAGA--CTATTCTTCCCCTAATATTTTTAGCCCTATGGATGGTAAtatctatttttgttaatttctgcAAACTCCATTACTCTCTTTTTTACTCCATAGTCCACCTTCTTTTCTGTAAGTGCTCATTTATTATAGGGCTTCAATTTTGCCAGTATAAGTTCATCATTTTGTTCTTGCTTTCAAGACCTGTCAGACCTTTCAAGAGCCAGAAGCAGTGGA----GAGTTGTGAGGTAATTTATAATTGCATTATTATtgagtgaa---aaagaaatgaagtatggaaaaataaatgtcttccACCCCTGGCGTCTGCATGTGAAATCAAGGAGCCACATCACAAAAGTCAGAAAAAGACT--GCACCAGCTTGAGTTATCACTTGCTAGAAAGTAACAAGAATAA-------------------AATTTTGGgataagagagacagaaacaagtTAGATGAGGTGATTC--AAAGGAGAAAGCCAAGGGAGAGCAAATAGTGTCATAAGGGTTAAAATTTAAGTAAAGAGTAATGACGTAACTGAGAAACAAAGGAATGAAAACTATCAAATATTTGAAGAGAATTAACAACAGGTGGTCTTTATCTGCTTTATGATGGTAACTGGaaattgtctattttgtttatcatAAGCAAATTAGTCTGGCCAGAAACCAGATTTAATTTCCCCCTTTCTTTGTTTGCTCAGGTTTCTCAGCCAGTCCATTATTGtgaaaagttgttttaaaacttGCTGCCCTCTCACATTCAAGAATGACAATAGAGTCAGGGTTTTGGATGCTGAAAG-AAAGCATATGGCAAAACAATGGAATGAACTTACCTCTCTATTGCAAAACAGGAAGACAGATCACAAGTTAGAGATCACAGGAAAAGATGGAAGGACCTGA-----AAATCCAT-CTTCTTGTACTTTCTCTTCTAAAAAGACCCTAAGCAAagcttaattttaatttcttgagtttttaaaaaagggcaAATAATATAGAAATGCTGCCAAACGTCTTTGTATTCAATACCCAGgattaataaatgtt-aatat-tttggtATTGTTGTTTCAgatatatgaaagaaataaaatagcatttacatagttgaaatctttctt-ttcttattttttctttatatcattcCAATACTACTTTCATTATTTCAGTGTGTATCACTCTTGTTTGTGTTTCAATAGCTTTAACTATCTTTAAATAAT-----GTATAGTAATATAATGctatttttatgtataatattgaataataatgtattatgttttcaaattttatatggCTGCTTTCATATGATGTATATTTGATTACGTTTTGCATCTTAAACTTATATTTACTTTGGGGTGATCATTCCATATTAGCAAATACAGTTCACTACCATGAATTTAATCTTTATATG-------------ACAACTTTTCTTACACAAAACACAGTGAT--ATTTTG--------AAAGTGTTTAATGTTGTCATTAT------GGAGAACAGATAGA--------TAAACATGTAGCATAGAAGCCAAAGAATAAAAGACAATGATTTAA--GTCATTGTTTTCTC----AGTTCATGATAAACTATGAATACCATtctaaacacaaataaata-tattacgtGTAATGATGTCAGAGGGCACTGAGGTTAATTTTCTCAGTGAACTGCACTTGAGAAAGTCTACTCTA---TTATCTTGCTATACTATGTATTTACT----------------TATCCATTCTCCATACTAAC-----AACATTAAATGCttctaaa-atattactttaaaaaatatacttccCTTATCCTATATCCCAGAGCATAATGAGTTTTCCTAGGATATGAATCTAGACATTAAATTGCTGAATTCCAGGTTGGGGACATTTCAAACTTTATTAGAGATTGCGAAATTGTTCTTCCATGTGGTTGTACCAAATTTA-CTTCTTTAGTA--------------------ATGTGGAAAGTTTA--TGTCCCTCATATTACTACCACTATTTGATACTGTCAGATTATAATTTTGTCAACATGTAAAATGTCATGCTTTGCTTTCTCTGATTATGCATAAAGAGAAGCATTTGTATGTGTTTGTTGACTATCTACGTGT-TCTCCTCTGTGTATTCCTTTTTAATGTCCACTGCCATTTTTCtcactgagtttttatttttgctactgGGAAGGACTTTCATACAATAATTACTTAATCAGTTTATTGGCCTTGTATACAAGTTTCCA----GTATCTTCTCTCAGTTTGTGgcttatat-----ttt----cattatgtttatggTATCCCTTTGTATCATATTAAGTTTAAATTCTCTT

a score=28003
s chr3            99587791 2779 + 160039680 AACAGTGATG-ACATCCACAATCCATTAATCAAGTGACAATATTCCTTTCAATTCCAGGAACACTATACTTTCTATAACGAGACAAGGGTAAGTATGATGGGAA-GGTGCACACAACTGGAAGCAAGTT------------TTCTAACACGTGTGCAGTTGTAC--TCATTCATAATTTTCTCCTCCTCATTGTTATTTGTCATAATTTCCAGAAACAG-----GTACAGAGAATGGAGCCTGGAGATGACTGCCTG---------AAAATT--------TTGATTTAAGCAACTATTACAGTATTTTGTGGC---TGCTAACGGCAGTCAATAGCACATCCCTGGACT-TCAGTTTATCAGGAGCATCCCATTGACAAAGCACCTGGGAAATAAGAGGTTTTGGGACAAGTGTTTGGTGATTCTATATGCTATTCAGTATCCAGTATGCCAGAGCCCATATCAGTGCCAGGTATATTAACTTCTGACCA----------CTAGACTGATTTCAAA------------CTTAGTTCATGACTGATTGGCTACAATTAACA--GAAGTCTCTT---AACTTTCCGTTTTAAGCCAACATTGTTATGATTTTTCTGGGCAATCGACATCGTTGTGAAATGCAGTAGTATTACTTAACTTTAGTGTATGCC-TCCTGG------------------------------------------------------------------------------------------------------------------------------CCATCTTGAGGTTGCTACAACCTGTAGCATTATAGATTTACA---CGTTTTTCT----------------------GAATTATGT-ACATAGCA--------------------AGCTTGAGTGGC------TCTGTTTTCCTCTGCTCAGGCAGA--------TGACTTAGG-------------------CTGACCAT---------------GTTTATACGGAGCTAAAGATTTGAGAAAATTGGAATAATATCCCCAAATACCAGATGTTTCTAATAGCCATGTATTTGCCTTTTT--------TATCCTCAAACATGTGGCTGATTACATTTTTCTGTGGTTTTGGGTCGATATAGCCTTAAGCATATCCAGTATAAAATAATGACAGATACAATCATACTTTCACTTTGTAATATTGACAGAGTTTAAAATGCATATGGtttatttttacatatttaaataaaattataattttaaaGTGGGACAGGATTCTGGCTGATTTTTATGTGTGCCAGTCATTTTGt----taaaaatatatttttgaaaaaaaatatGAAAATGTAAACATGACGTGAAAATTAAAGTTAAAAATAAGTGAAACTGAGACCTAATTGAAAAATGCAATAGTAGGAAAGGAATTAGAAAGAAATAACAAAACGGCAGGGGAAAAAAACAAACCAGAAAAAATCTGAAATGTGCAGAACCTCCAGAAAACTTTCCAGTTCCACATACTATGGTCACTATTATT-TTTGAGGCTAAACATGCGTGAAATTTGGAATTTCAATGACACATACTTTTGAAACAATTTCCCTCATTTATTCCATTCATTAACTTTTCCCTAAAGAGGAATTTACATTATGCAGCTTTTGAAGACTCAAGTATAGATGTCTTCCTATTGACTTATTGTGCAGAGAAACAAAACAAGGGTAAAAACATAGAAATGGGTTCTATTTAAAATGTTTTTGAGTTAAAAATGTTCATTTTGAAATGATTTT---TTTGTAAAAGTATTAAAAGCAGTAATTCTTTATACTATAATTCTTTAAATTATACATCTCTAATGTGTTTTCCAAAATTTTACTTTTAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagaTTGCAtgtgtgtttgtgtgtgcacatgagtgcagtgcctgggcagggcagaggaggtcattaaatgctttggacctggagttacaagtagtattgggacacttgcttaggtgctaagagctgaactcttgcctctggaagggcagtaagaacgctcacttacttagctgtctctcttgccTAACTCctttcccaatgctaacagtcacccaatattagtacaattactaaaatcagaagactaatactggtattagtatattatca---tataatttataatctttactcatattttatcaatttatt------caAGTTTAAGATCATACA-----ATTAGTT-------------------TTCTTTTAAAGCCTAGAACAATCCCATTTTTTTTCCCTGCATACCATATAGTAGTATGGTTGGGACATTTTTGAAGA---------AGTCGTTTTTCTAAAGCTCTGCTAGTTTCTGGAATTGCTTCTTTACCAGTAAGTTCTTCATGGTTGAAAGGCtgtttttctcagcgctttatcacgaggca---gataagtggaatttcctttattgttagtgatgttaacacttatggtgggattaaaggtgtttgctttgccagctttctctactgcaagt----tgcttttgcactgaatatgactcaagtacccaagc---------tttgcccttaagaaaa-accttactcttcattatgtagttgttcacgaattttgtcattcttactggtttctttctaaaataatggttgttggtcaaatgatctttactttgtaattctcatcattccttgtgcatttactgtttggaagtttaaagtacgagagagtcatcttttgtttatatatttgcctacattttaccacaaactgacagattttaatttcacttttgtgggt--taatcctttactctcgatttactctctattactttcttgtgcttgttgtctctggtttgaccgtcagtaatcccttcaagttggctccttggccattttaa--aactatgaaccacat-tttaaagtt-tttctttgcttactggtaccataaaacttaagaaattcctctagtacttttcatatatgagcctttgaattgcagattg-tctgagccttggagctttctgttg
s HiC_scaffold_1 109479542 2673 - 233722169 AACAGGGATACATGTCTAAAAGCTACATATCAAGTTGCAATCATTGCTGCATTTTCAGTAACACTATA--TTCTAAAATGAGGCAGAATTGAGTCAGAAGAACATGGCAGGCTTAGTTAGAAGAGAGCTGCTAGCACTTTCTCCTAACATGCACGCAAACATACATTCATTCTCAACTGTCACTCCCGCATCCTCATTTTCCATAACATCTAGAAACTGAACTGGTCCACTAAATGGTACCTTCATGTGGCTGTTTATGTGGGGGTCAGATTAGTGAGAGGTGATCATAATGATGATTACAGAAGTCATTGATACTTATTAAATGCTGTTTTTA-TACTTCTTCATATTGTCAGCCAAAAAGAGTCATAAACATAACCAAggactttgt----------tttgagaatagGTGTTTGATG-TTGGATATG----TCTGTATCTAATGTGCCAAAGAAAGTATCCCTTCTAAACATGTTAATATGTTCTCAATCCATGTTCCTGGGGTTGCTTCAGATTCTGAATAAACCCTAGTTCATGGCCAATTAATTAGCATTAACAAGGAAATCTCTTTGAGACT----GTTCTAA-CCACCATTTCTTTGATATGTAAGATCAATAAATAGAATTTCAAAGCACAGAGGTGTTATTTAACATTAATATGAGTTatcctgggggctggagatttagctcagaggcataagcacctgccttgcaagcaggcggtcgtgagtttgatccccggtaccgataaaaatgaaaatgaaaaaaaaattaaaataaaaaatatgagttaTCCTTTCATCTTGAGATGCTAACAACCTACAATATTGCATACATATAGAGCATTTCTCTTAAGACATAGAAGAATGTGATAGAATAGTGTTATTTAACATTAATATGGTCTATACCTTCATTTTGAGTTGTCAGCAATCTATAATATTATGTGCGTGTAAGGGTATTTGTGACTGAGGAAAGAAGAGTATGAGAGAGCTGCACACATATACCCAGGGAAAGTTTGTGTAAAGTTAATAATTTGAGTCGACTGGAATAATCCTCACAAACACCAGATGTTTCTAATAGCCAtatatttgcctttaaaaaaaaaataccc---agcaTCTGgctgattatattttattgtggTTTGGGGCAAATATAGCCTTAGGCATGACAAATGTAAAAGAATGACAAATATACTCATATATTTACTTTGTAACACTGACAA-----AAAATGCATGtggtttatttttacatatttaaataaaagtataatttttaagtgGGATGGGGTTACAGGTGATTTTTGTGAGTGATGATTAATTTATATCATCAAAAAGCATTCTTCTAACAAGGACTGAA-----AAAAGTCAcctaagaaata----tgaaaatgag---aACAGAGCCCTAACTG-AAAATGTAGTGGTatcaaa-gaattagaa--aaataagaaagc------------------atgAGAAGAAAGCTGCAATATGTAGAACTGT-------CTGTCCACTTCCATGTAATAAGAATGCTAGCATTCTTTGAGCATGAACATGAGTAAAAATAAGCTTTTAGGTTAGATATA-TTTTGCTGCAGGTTTCCTCATCTCCCATGTTCATTAGCTGCCCCTTGAGGAAAAGTTTATGGCGTGTAGCTTTTGAAAGTTT-AGTTTAACCGCCTTTCTGCTAATTTAATGCACAG----ATAAAACAATAGTATGAACATAAAAGCTGGGTCTATTTCAATTGTTt---agtt-aaaattttcattttgaaataatttcagaattGCAAAAGTGTTCAAGTTAG----------AACTGGAATTATC--AAATATTCATC------------------ATTCTAATTTCCTGTATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATT--------------------------------------------------------------------------------------------------------------TTACACAATCTTAG---AACTATTAAAATCAAGAAccttata-tattatacatataatatCATTTTCTAATCTATGTactcttttgatatttttcctgttaaTTATTTTCCTGGTCCAGGATCATACATAACCATTAGTTGatttaagtttgttttttcttctgctttaacCCAGGATAATCTCCTGGTCTTT--CTTCAT------CAGT--TATAAATTTGACACTTTTGCAGAATACTGGCCAGTTATTTTTGTTGAG---TGGGAACTTCGGGAATTTCTTCTTGAT---TAAG------ATGACTGTAGGA--GTTTGTGGC--------ATTAGGAGACACATGATGACTCG--TTACCATTAACGTGAACTTTCCTAACTTCCGT----------AAGGTTTTT--TCTGGCATGTTTATCCACTCTAAGTttactaattttcattttatcataacT-AAGTGTCTTGTCAGTTGATAGCTTACAACTATGAAAATATCCTATTTCT---------GCTGTTTTTCCATTGTTTTActc-cattaatttttatctagaacattgaatatttaacaaatgattg----ttttcaatttccatcatttctt-tcCATTCATCACTTAGAGTTTTAATATAAGAAAGAGTAagtttcctttttagttttt--ttacatT---AAATACACTGACAGATTCTTACTTTA-TTCCATAGGTTATAAACCATTACC---------AGCTTTACTATCTTTTTAGTCAAACTCTCTCAGATTTGGCCACCAGGAGCTCATACAAGTTCGCACCTGGGGTCTTTTTATCAAATGTTCATCATatctttaaagttctttttttatttagttgcAGCAAAAGATAATCTAGATTCCTTTAGTACTTTCCCTCCTCAAACCTTTAActtgattatttctctgaatCTAGTTGCCTTTTATTG

a score=50326
s chr3            99592144 1690 + 160039680 CATATCTGGCATAACCAATAAAGCCAAAAACTTGG--CGTGAGGAGAAGATACTGTGGTGGAGAGAGAGTGGCTCATTTGGCACTAAGATGGCTTGGGTAACATCTGCCAGCCCCACCCTGGTAAAGTGAGGTAGGAGAGGGAAATCACAGAATCAGCTGATCCCGTCTTAAAAT------GCAGGGCAGGCCATTTTCAT----TTTCTGTAGCTATTTAATTTTCCCCCTTCAGTTTCATTCAACATGAAACCACAGGGG--ACTGAAATTGTTTTGAAAATGAGGAACAcagccagacctcaatcatttggattttattatttggagtttgtgataatttgaagagtggcttagctgaagtttatctaagttcatctatggggaaaagC-----------CCCAAACAGATATTTATAAACTTGGGGAAGGGC---ATAAAACTCATTGTTAAATAAATCCAATCAACTCTATTACATATAAGCAAGTAaaaaaaaaaaacaaaaacaaaaacaaaCTA--------ACTGTCCCCGAATTTGCAGTTAGTGGCCC-ATTCCATAGGAGCAGTTATTTTACCCTAACTGGAAAGAGTTTGGTGTCTCAAAGTGACAGAACCACACTTCCTTTTGAAATGGCCCATGGTTCATCTCCTTAGTTGTCCATGTTAAA---------ATCTCTTCTTCCTCTGTCCTTGTGTTCAGCCATGGTCCCTTCTTCTCATTCCATTTCTGCGTGTTGCTCTCCCCACttaagatagggtctctctctgtagtccatctggcatgagcctgacattcacccatctccactgtccaagtgctgggtttgcagacagggccctccatgcActttcctctttctctttgctcctctctctctttccctcccttccctt--cctctgtctgtcctgcccctACTAAC---------------------TGTTCCTAACTAGAAATTGAGAGACATTTCCAATTGATGTGTGAACTATCAAGCAAGAAATCGGGTGAACAAAGTGCTTCTAAACTGCTAAGTCTTCCTTTCTGCACTACTTTGGGATGGAGTTGGCAGACATGGAAAACCCATGTCCTCCAGGCAACAACCTCTGGGCTCGCCACACAGGATGTCTGACA-GAGCT-TGGCAAGCTTCGAAGTCTGAGGAAAGGCTCTGTCTTGGCTTTCTCAACTTTTTTTTTAAACATTAGGCAATCTGTAATTTAAATGACACACATTGATTACTGTGCAAATAGCCAGCACACATTTTTTTCTTACAGAAATAGAGAA-------------TTATAAATGCTAAATTTTCTTTACAGTCCAGAAGCAGAAG-----AGGATTCTAATTTGCACTCACATTCTTTTTGAATGAAAGAATCCTTACCATCGTGAAGCCATTTCAGCCGTCTCATCCCTAATTACCACTTGGTATCTCTTTCTAACTCCG------------TCTCTTTGTTTTTAATTGGTGATTTCAACCATCTGGACCCACTAGCTTGAGAAGGCATGAGGGAGAAATGGAACATAAAAGAAAATAAACTTCACCCATTTCAATCAGGTCCACATCTAAATGCTCCAAT-CCCATGGCATTTCCTGTATTGTAGGAAGTGT-GTGTCAGCA-TAGGCCAGTCTG--AGGATGTCTGGGTAATGAATAC--AAAGAACAATGCTAATGTCCAGTTAGTGTTAAGGACTGGATTGCATAGTACTTT-GGGAGAGAATGCCCGGTCACATTCCCCTTTGCCACAAGGTGAGAAGAAGGA
s HiC_scaffold_1 109487817 1668 - 233722169 CAGGCCTGGGGTGAgcaaaaaagacagaatccctgtcCTCTCGCAGCTAATGCTCGTGGGGTGAAATAGTAAGCAATTTGGTCCTCAGTAGTCTGGAGAGACACCTGGCACCCAGACCCTAGTGAAGATA---CGGAAAGGGGAAACATAAGATTAGCTG---------TAGAACAAACTGGCAGGAAAGACAGAGTTCATGTATTTTCTATCAGTCTTCAAAGTTTTGT-TTCCGTTTCATCCAACATGAAATCACAGGAGGAACTGAACATGTTT-GAGAATGAAAAACACAGCCAAACCTCAATCATTTGGATTTTATTAGTTGGAATTTGTGATAATTTGAAGAGTGGTTTAGTTGAATTTTAtctaagttcatctatgaagaaAACCAGCAAAAAATTCCCAAATTGAT-Tttgtaaa------aaatgattttataaatctGCTT-TGAAATGTGTTCAGTGTTGTCTATTA------------TAGCAAACAAACACCAACTCAATTTCAAATCACTTTATCAGCTGTTCCCAGATGTATCACTAGTGACTCTAGTACCCAATAGTGCTTATTTAACCTAAATTGCAGGAATCAGagtaactgaaatgaacagaactgt-tttctttCTAAAGCGGTCTATGTTTCTTCTCTCTATGTATTTAAGGTTAttgactttttctctctttttcgcttttccttctcctccaacCTGGAACCTTTTCTCggttcc-------------tctctcccttctt-------------------------------------tttgcCATTC-----TCCTTattgtcctctttct---ttttcag---------ttcttggccttctttctttgtctctcctcGTGTCTCTCTACACTTATCTTCCTCTATCTCTTGCCTCTTTTGCTTTAACCAAAATTAGGAAAggtttatgtatatttttctaacca-aaattgggaaaggttt-------atgtat-----attttttaaaaaattaagcaatcaAAATGATTCTTAGATGCTAGGTCTTGCCCTCTCTCGTGCTTTTGGATGAGGCTAACAGATCCTGAAAACCTGTGTCTTCCAAGCAGCAGCTTCCCGA---GCTATACAGGATGTTTAATAAGAGATCTGACAAGCTCAGAAGTCTGAGGGATGgctctgttttgggttttttaatttttt------gaattagcCAATCTACAATTTAAATGATATACAGTGATTACTGCAGAAACATCCAGCATGCATtt----cttacagaaataaagaactgTGGTGGTAATTTATTAAAGCTAAATTGTCTTTACAGTccagaagaagaaggaaaaaaaagactaattTGCACACACATTCTTTCTGAATGAAAGAATCTTTACCATCATGAAGCCATTTCAGCTGTCTCATCCCTAATTGCTACGTGGTATCTCTCTCTCTTACTGCTTTCCTAgtgttctctttgtttttaattggtgATTTCAGCCATCTGGATCCACTAGCTTATGAAGGcatgagagagaaacagaacataaaagaaaacaaac--cagccATTTCAATCAAGCATACATCTGAAAGCTCCCCTATCCATAGCATTTCCTATGCGATAGGAAATACAGTGTCAGAATTAAGCCAAGCTGAAAGGATGTTTGGG-aattaatgcagaaaaaaaaatgctaatgtCACATTAGTGCTAAGGTCTGGGCTCCAAACCACTTTCAAGAAAGGCTGCTCAGCTACATGTCAGTTTGCCACATGGCCGAGAAAAGGA

a score=11166
s chr3            99598471 945 + 160039680 TCTTCTGTATAACAAATGAAGAGACAGAAGCCTA----CTAAAACAAAACA----GCTCATGGGTGTGACAGTGTGCCCTCCCCTCAGTGCAGTCAAA-GACAAGAACAGGATATAGCAGAAATTAACCAACCTGGGATTAGATGACACATTTTCCAAAAATACAATTTGTGGTAAATATCACAGATTTTTGCTCAGGAAGACTTACAGACAACCCAAGAAACAAAACCTGAACTCCTAATCAAAACCACAGACTTAACTTCTTCAATTAAAGAGA-CCAGGCATCTCATTCTGTAGAACTG---CGAAATGTAGCACAAAGTAAAACTCTTTGCCTCACATTAAATTCTTCAGGGTAAAC------------------------TTTAAAGCTCAGTTTAAGCAGAATCTT-----GATGGCAGAAGCCAGGAGTAGAGTGAGTGTAAACG-TGTCTTCTGGTGATCTTAAG----GATCTCAAATGAGTTGAGAACCTTTGGCTTTGGCAGTTGCTACAGGTGCATTGTTCTGGCTGAACAGC-TGGGTGTAGTTGTCCATTCCCACAAGTCCTGATACCTATGAGCCTCCTAGGCTACTTCCAGGTATGTTGTTTACACTAGTCTCTGAATAAGCAGGACATTCCT-GTGTTAACCATACT----------------ACCTTTTCCTTATTATTAAGTTTGTTCCTTGCCATTTTATCCATATTAACAATGCATTCTGAGCCTATACTTTAATCACAG------Tttttaagctcaaatataatttcaatacttcctcttccccattcttttctctagctcctcccacatttcccatgttcctccctttatcctctaacgtgccttttcaactttcttctttttttg--aatatatcata--tatcatctatctatctacttacagg----tagatattgataggcatatata-agtaaaactgatgagtcta-----tttatagggttttgggtgtataggatttcagggacagtaacttcatatt
s HiC_scaffold_1 109503202 952 - 233722169 TTCTCTGTGTTATAGGC-AAGAAATTGAGGCCTAGATCCTGTAGCAAAACAAACAGGTCGTATGTGAGCCAATGGGCCCTCAACCTAGTACATTTTCATAATGAAAACATGATGTAGCAGGAATTAACCAAACTGAAATTATATGGCATACTTTCATGGTACATAATTTGTAATAAACATCATAAATCTTTTATTAGGAAAACTAATAGAAAACTCCAGAAATAAAACTTGAGCTACT-----AAACTCTAG---CAATCTTTTTATCATGAGAGATTTACAAATATCACTTTATGGAAATGGTTCAATGTACAATATAACGGAAAAC-AGTTGCTTTACGTTTGAATCGTTGTGGTAAACTAGAAAATTCCAATGCATGGCTTTTTTCAAGTCCAGCTGAAACAGAATTTCTGGGAAATGGT--AAGCAGGTATCAGAGT---TATAAAAGACCTCGTCAGCTGACTTTAGGTGCTGATC--------ATTGAGAACC--------TGGCTGCTG-GGCAGGGGCACTGCTGAGGCTTCATCTCATGTACTCAGTTGACCCTTCCTGCAAGGCCT-------------TCCTCAGATGACTTTCAGGGATATTGCTGTCATCCATCTGGGAAAAAGGGGGGTTTTGTGAGTTTTACTCTTGCTGAAAAATCCCTGGaaggctgtttgttttttttt---ttttttttttgcc-tcttacATGTGTTGATCCCA-ACTGTAATACAATATTCcaagaataaaatcttttctggtgatcaagaataaaatcttttctgtctcttcccttttctctctccttgctcCC---------------TTCTTACTTCTA---TCTAAATCATTGGTCCTAACTCTGTGTTTCTCTGATATTAAATCATAGTTATCGTCTATCTAAGT-----CAAGGCTCTAGACTTGAACAGTCGTATTTATGGGATATCTGTGAAGACTAAATGTTTTACAAGG---TAAATGTACA-TATTTTGGGGAAAGTAGC-TCATATT

a score=77130
s chr3            99600971 3491 + 160039680 CCTTGTTCCCCTCCTA-----------------------AACCCTGTATTTATTATATATAAAGTCATAGCTCTCTACCTATTGACTGAAGA--------TTTAGCAGCCTGTATTTATGTAATGTCTC--AAGGCTAAATGTGGCTCAAAAAGAA-GTGAATGTCCTTTTAAGAGTGCCACATGTTATTTACATACAATAACTTATATTT-TAATGTAACTGGTAAAAAAATCAATAAAAAACACAATCATTCCTATTTCTTCTTTCCTGGAAAAT--GATATAGGGAAATACAGAGGAGAGAAGGCAAAACTTAACTTCTTTTCCATTTTAATTCAAACTGGCTTCAATAGAAAAGAGATCACTGGTACTCCATAATTTTCAGAAGATTTAGGATTTATCTATCTCATTT-AATGTCTGCAGTAGCTTGGCAGAAATTACCTATATCACCAATAAATCCTCgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtatctgtgtgtatgtgtgtctgtgtgtgtgtgtgtgcatgtgtgtatgtgtgtTTAAAA----------TGTTTAAGGTCCAACTTATAAGTAATACAGTGTGAACCCAAAGTTGTTCTATCCTAAAACCTA-TGCAATTTTATAAATTCCCTTGTGCCCTTTTAATTGTACAGCATGAAGTACTTGATCATTC------CAATTATGTGTATAGGGTTTCTCATACCAGAACTCATAGGATAGAGAATGATAATTTTTCAAAAAAAAATCATCTAGAAAGACTCCTTACCAA--AAATATGAGTGAGACTAAAAGATGAAG----------TGGAATTTT----ACCTTCTT---CTGTCTCAGGGTCATCCTCTGTAATTTAGGCCAATCCCATATGGATTTAGTTCTA-AGGCTGGTACCCTCTGCTGTTCCCTAATTTCTGAGTTGAGCTACTTTCAGAATCTAGTACTGGATGTAAAATCCTCATCAGGAATATAAAAGAAAAAAAACAG---AGGCATGTCTGTGGCTGTGACTACCATTGT--------------AAGACTCTGGCTAGCCTTTGAAA--AGAATGCGGGTGATT-CCTCATG------------AGAGAGTAAAGCATAGCCTA---GTTTAATGCTATTTCCTGCAGGAGTTCTTCAAACCCTAAACT-GAGAAGTATCAAAAT--------AGTTTGCATGAATCAAAAGAGCATTTACCTAATAGATATAAAATGGCTTTGCAAGCACTGGCAACACAAACCTATCTCAATGAGAACCAAGAAGGGGTCAGGAAGTGGAGCAGAAAGCAGCCACATGCAGCAATCTTCATCAGAGATCAGAGTCAGA----GACCAGGACAGGGAGTCCTTTTCTCTGTCCCC---ACTCCAATTAATCCTT--GTTCCCAATTTTCCACTGAGGCTTTCTGAGGGCCTCCTGAAAGAAATAGTTCATTCCAGACACACTTT----GAGAAAC--CAGAACAACCGACACTCCCTCTGAGGTTGGATCTGGATACTCCTTAGTTCCAGACTCCTCAAC----AGACCTTCATAGCAGAGTTATAAATG-GAGGCT-CTGGCAAGCACCTGGAAACAG------GTCTTCTGGGTTTGGGTTTCAAAAAAGAGCTTGAGAGGACGCTCTCCAGCTCTGGTGCCTCTTGGAACTTGTCTTGGAATCTGTGAGAGAAGGGAAGCTAAGAGGAATTAAAGCTGCCCCGAAACCTTGTAGCCTGGGGAGAGCTGGGGACTAGGGGCGAAGTTGGTAGGT-AGCTCAGCTGCTTCCCCTCCCCAGTTAATCTATCACTGCCACTGTGGCTGTAGGAAAGCCATCTCCTGAACTGTCTGTCTGGAAGGAAGGGATAACCTGCTGCTGGCTTGTGCTTTCAGTTGAATTATATCACTTACCTTCTCATATGGCCTTTCATCAAAAGGCTTAAGTGTTTTTCTTTCTGTGGGCCTTACTGGCCACGTTTCTCCCATTCATTATCAGCATAGCAGCCTGCCATGCTGAGCCCATATGCAGCACCCCCAACCCCCAACCCCCCAGGGGCTCTTTAGCAGCAACAATTTTCTAATTCAGAACAGACTCTCCTCTGAGAAACGGATCATACAAG-----TACAACTGCCCTTAACAGAACTTATCAAAGTCAGGGATTTTAGAAACAAGATGTGAACTCCCCC-AAAGAT-GGGAGCCATAAATACCTCCGGCATATTTGAGTTTACCTGGAG-----AATTGTATGTCTTAGGGACTGAGTTTAGAGTAAATCATAGGCTGGGACTATAAGGTCATTTGAAGATCAT-ATTAGTATGGGTTATTACTTTTAGAAGAGGGCTGTGGATTGTTTAGGGCATTGAGAGTGGGGGATCCATTGTCAGAATACATGTGCTTT-AACCCTGACTTGATAACAAACTATTTTCTTTTTATGTAGTTACATATTTTAAGATTTACTTACttttatgtgtataagtgttttctttgcatctatgtctatggcataagtgccaaatgagagcattgggaggttgaatcccctaaaactggagttacaaaaactggaaacgattttgctgctgtgtgagttgtgggacttgaacccagtcatctgcaaaagcagcaagtgctcttaacctctgagtcaacactgcagctccACATTTATTTATTTTAATTGACAAATAGTTGATGTGTACTTACTGTGAAGAaagtaacacatccacttaacatatcacttacagtttgtctatgagcagggtgcttaaaatccattaatttagcaactctggaataagtaagatattgttagtaactatggtcaatctggaatacagcaaaccaccacaat-tatttttcctattggactgagacttggattccagggacttcatccattaccatctgcttgctcttagcccttgtgctcctagcctctggtaaccatcacactattttctgcttctgtgactgacattttctatgagctcacaggcaggtgagctcatgttgcctctgtctttctgtagctgtcctatcct-cacagcacagtgtccttcaggatcc-tcgatgtggtggcaagtgacaggatCTTGTATTg-tggaaatataaatgaagctagcaaatttggaaaaccatatggtagttagctcctaaaaaacaaaaacagaattaccatgtaacccagcagcttcatttctg---aacagttgaaggaactgaagt-----------aagcatgt-ggaatgttaatgtatgtttgaacagttattgtaactgtcaagttaggaatcaatatcagtgcaaatcagtggatgtacacatgaaatatatgaacaatatatatgcacaataaaagccattctatgaagcctttaaaaaaggaacattctgGACTCAAAGTATTGTC-AAACTATAAACAAATTActt--------taactcttagggttatcatctacataattgatatag-gacatccactttataagattgttgt-agaactgagtggtagacatgcatgtgtgcatgcaagcacatacaacacacaTACATAAAGTAAC--TATAAAACAATGAATATGGTAATTGC-TGTACTGTACTACTCACTTCATTGtatatatatatatatatatatatatat
s HiC_scaffold_1 109503968 3232 - 233722169 ccttgctcCCTTCTTACTTCTATCTAAATCATTGGTCCTAACTCTGTGTTTCTCTGATATTAAATCATAGTTATCGTCTATCTAAGTCAAGGCTCTAGACTTGAACAGTC-GTATTTATGGGATATCTGTGAAGACTAAATGTTTTACAAGGTAAATGTACATATTTTGGGGAAAGTAGCTCATATTATTTACACACAAGAGATCATATTTCTAATATAACTAGGAAAAGAAAC-----------CTATCATCCTTATTTTTGGTTCCCTGGGAAATATGCTACAGGGAACTacagaagaaa-------aaactcaattcTCTTTCTATCTTAATTCAAATTAGCTTAAGTAAAAATTAG----------CTTCATGATAGTCAGG-------GGACTTATATGTCTCATTTTAATCCCTATAGCAGTTTGCCAGAGATTACCTACAT------------------------------------------------------------------------------TTTACA-------------GCTTAAAAATAACACGGTTGCTTAAGTTAAATCATGTAACTA---------GAACCAACATTTATTACACTCcaaaattcacttttattttatca-taCCTACATGTTCCTGTA---------TACCAAGTCCTAGAGTGTGTAACAAACAATTATGAGTA-------------ATCAGG-----TTGGATA-AGACTG-----TTTCCATGGAATGCTCT----GAGAGCTTTCCTACAAAGAAAACATGACTAAGAGGAAAAGATGAAGCAGTTATTGGTGGAAATTGGTGGAACCTCTTGACATGACTT----TCACTATGTACATCTTAGGCCTTCTTTGTATGGATTGGGTTCTTTAGACTTGTAAACTCTGCCATTTCCCACTATCTCTGTGGGGCTATTTGGTGCATCAAATATTAGATGTAAgatcctca------aaaaaaaagaatagaaacagcCCAATAATGTGTGGCATTCTGACTACTTTTGTTTGCCTTCAGTAAAGAGATGCGGGACAGCTTTCGGAACAGGAAGCCTGATAGCTACCCCATGTAGACAGATTGAAAAGACTCTAAGATGGgatacatgtttaaaaatatttc-tccaagGGCCCTGGAATTCCAAAACTAGAGACATATCCAGAGCTTTTTGGAGGTTTGAGGGATCACAATAG----tacttaataaaaatgaaatggctTTGAAATGACAAGCAAAATCAAGATGCTTTAATGGAAACCAGGATAAGGGCAGAAA---------------------TGGAGGCATCTTCATCAAGGAGGAAATACAGAAAGTGACTTGAATGGAGATGTCCGCCCACTTTCACCCCAACACTGGATAATACTTACGTGATTGCGTTGTCTGTGAAGCTTACAGAGGGCCTCCTGAAATGAGCAGTTCATGTCAGACATACCCTCAATGAGACACTCCTGACAAACCAACGCTCCCCGCGAGGG-AGAGTTGGACACT---TAGATCCAGAGTCCTCCTCTCAAAATCTTTCCTAGCAGGGAAATGAATGAGAGGCTTCTGGCAAGCACCTGAGGGCCAACTCCTGTCTTTTAGGCTTGGGTTTCAGGAAACAGCTTGAGAGGATGCTCTCCAGGCCTGGTAACTCCTGGGACTTGTCTTGGG-TCTGTAGGAGAGTGGAGGCTAAAAGGGATTAAAGCTGCCCTGAAACCTTGTAGCCTGAGGGGAACTGGGAAGTGGAGGAGGCG-GGGTGGATCAGCTCAGCTGCTTCACCTTCCCAGGTAATCCATCACTGCCACTGTAGCTGCAGGAAAGCAGTGCTGTAAATGGTCTGCCTGGAAGGAA-GGATAACCTGCCGCTGGCTTTTATTTTCAGTTGAATTATAACACTTACCTTCTCATATGGCCTTTCATCAAGAGGCttaagtgtttttctttctgtgggcCTTGCTGGCCACGTTTTCCCCATTCATTATCAGCAAAGGGGCCTGCTATGCTGAACCCATGTGCAGCACCCCCAgttccccagcccccaggggcTCCTTAGCAGCAACAATTTTCTAATTCAGAACAGACTCTCCTCTGAGCAATTGATCTTACAAGTACATTACAACTGGCTGTAACAGGAGTTACCAAAGGCAGGGATTTCAGAAACAAGATGTAAACTCCCCCAAAAGATGGGGAATCATAAATACCTCCAATATCTTGGAGTTTACTGATAGTGCTCGAGCATGCATCTTAGGAATT---TTCTGCATGGCTATTGGGCTGGGAGTTTGAGATCATttgaaaatgatcattaatgggcttgttggtttttaaaaaagtattgtgGGTTGTTTGGAGCAAGTAAAGTACagtatataaaatcaaaatggctgTTTTTTAAATCCTGGCTTGATCTCAAATTAT------------TATTtacttaaattaaaat----taaaatttaagtggaaaa------taatagtgtatatatttatgg----agtacaATA-------------------------------------TTAC--------------ATTTTGAAGTTGTATATATTGTA----------------------AAAAGATGAAA------------------------------------------TCAGGCTAATTAAAATATCCATCACAT------------------------CATCCACT-----TACCACTTGTGG--------TGAGAATG----TTAAAATCTACCCTTTCAACAATTTTGAAACTTACAAG--ATTATTATAAATTGTGGTTACTATACAGTGCAGTAAATCACTAGAACATATTCCTTTTGTCTCACTGAAATTTTGTGTTCTCTGA-TCAAGATATT-CCTTTTCCCTATTCTTAA-GCTCCTGCCTTTAGCCTTTGGTAACTGTCATTCTGTTCTCTGTTTCTGTGACTTAAACTTT-TAAGATTTTACATGTAAGCAAGATCAtgcaacatttatttttctttacttggcttattttacttagtataaTGCCTTTCAGGTTTCATCCAGGTTATCACAAGTGATAGAATTTTCTGTTACTGGCAAAGTAAATTCGTATAATCTTTTTGGAAAACATTGTATAAGTT---TcagagaaaactaaaatataattaCCTTATAATCCAGCCATCCTACTTCTGCTTAATGtctgaagaaattaaaattaaagtactAAAGACATCTCTGAATTTTCCTGTTCACTTCAGTATTATTTGCAATAGCCAagataggaatcaatctaagtg--AACTGATAGAtgtgtgaataaagaaaatgtggcatatatat-----ataatag--atactatGAAGTCTT---AAAAAGGACATTCTAACCAGAAATTATTTACAAAACCATGAAAAGGTGACTTAATCTCTCTGAGTCTCAAGTTCCTCATCTTAAAAATGGAGGTAACAATACCCACTGTATAAGATTGCTACAAGGACCAAAT----GACACGGACATCTGAA--------------------------AAAGGAACAATATAAAATGAtggttatattaattttattaactatAATAATCACTGCAGTGCATATATGTACATCAAGAGAAGTATAT

a score=51831
s chr3            99633060 3838 + 160039680 [encoded data, 4409 characters]
s HiC_scaffold_1 109532915 4143 - 233722169 [encoded data, 4409 characters]

a score=76906
s chr3            99636937 4993 + 160039680 [encoded data, 5487 characters]
s HiC_scaffold_1 109538623 4833 - 233722169 [encoded data, 5487 characters]

a score=37277
s chr3            99646780 1470 + 160039680 CTTATATAACTGCTGTGCTTGAGAAGAAATAGCTGAACTTAGGTGAGGTAAA-------TAGTTGTAACCTGTGTGTGCTAAGCATGCTGTATGG---CCTGCCAGAAGGAGAGTCAGCTGTAGAAAGAAATTTATCAAATGATGATAAGGCAGGAGCTAAAGGAATAGAAGCTGAAGAAAGCAAAA---------TGCTTAATTCTTGGATAATTGGAAATGAAACTGGATCCTTTGGAATAAATAAACACTCGAGGCACCAAAGTTTCTTGGAAAGTTTGTGTGGAAAACCTTAAGTGACCATTAAATGGATTTGTATTTATCTTTGCTTTTATTATCCAAAAAACCTTCTGCCAGACGTCAATCTCAAATACTAGAATCAGTTGTA-TCTCTCGGGGAATTAAAAGTCTCTGTA--------------TCCCTCCTGTGTTCT--------ATTCTTCCATTATTTTGATCTGTAAGTCAATTAAATCCTTTTGGA----GGCCAG---CAAATATAA-CACTTGATAATTTAAGTCATCTTTTC-ACTTAATGAGTTTTTCCCCCCTCTAAGTCAAGCAGCGCGTCTTCAACAGTGATGAATATCCGATTTTAAGC------------------CTTAAAAAACAGCTCGAATTTCATGTTTTTCTGATCTTTTGAATGAATTTACATGTTTATTACAAATAGCAACTTCTAGTAGGCATGACACATTTTTATTATGTCACCGACAAA-CGCTGCTTAGAGATGTGAAATGTCTCCATCGATGCAGAGTAACGACCAACACAATAGAAACTCTGTATATTGTTGGCAATAAATCTTGAAGCCTTGACTTAATAATTTCAGAGGTGTGAAGAAAAATGGGTTTTCATATAGTTCTTAATGTGGAGACTCACAGTTATTGGCTCATTAAGATGGGGAATGTCAGTCTGCTAGGGTCAAACTATGCTGAATGAAAGCCCTCCTTAGAAACAGTATGGTTAGGTCCAAGTGTTGCAACAGAGGAGGCCATTGAAGAGTGTGTTCGAAACTCAGACCATCTTGTTGCTATA-CTGGGGTCAGCCGGTGGTATCCGATAATTCATTTGACCCTCTAGACCTCCTGAATAACTAGACTGTCTAAAATATAAG-----TCTCTGTTCTTAGGTGGCTGCAATCTAATTGAGTAGAGCAAAGGTATACCATGCATTATGGAATGATTAAAAATAAGCACAAGGTTTTTCATCAGTACGAAAGAGAGCAAAAGGAGAAAGG---AATCATAAAACTGCATTTGACCATGAGTTTTGGAAAGACAGATATCTGGATTATAAAACAAGA---TTGTGCAACCATGTCTGAATGATAGAACGGAAAAGACATCCAATGTGTTT-TAGAAAAAAATCTAGCTATTGACAGAGAACAGTAAGTTTCATAGCTTCAACAGTTACACCCCTTGAGATAGTCTTACAATTCTTATCCTA--CTTTAAATTCAGTTTCCAAGATCTACCTGTATTTCTAGTTTATTTCTAGTATGTCTCCTTGATATCTA
s HiC_scaffold_1 109554913 1485 - 233722169 CTTGTATAGCTGATATGTCTGGGGAGCAGTACTTATACTTAAGTAAGTAAAAAATAACATACCCATAGCCTGTGGTTCCAAGGAGTGTTATACGGTCTCCTGCATGAATGAGA--CTACCACACATGAAAACTCATCAGATGC------ACCAGGAA-TAGAGCAACGGAAATGGAAAATTGCAGTCATTCAGTTCTGCTTCTGTCTGGCAT--TTGGTAGCAAGACTGACTCCTTTAGAATTAATAA---------GTACCCAAGTTTCTTGGAACATTTGAGTGGGAAGCCATAAGATACTGTTCAACAT-------Tatatctttccttttattctcccaaaa-cttaGAGCCAGAGATGATGTACAAATATTGGA-CCAGCTACACTAATTCATCAcaataaaaatctttataaatTGTTCTTTTAGTGTCTGCTTTGTTCTCATTCTGTATCCTTCTGGTATTATAATCAATAAGTCAATTAAATTCTCTTAAACCTTAGCCAGATACAAGTGCAAACACATAATCATTTGAGTGACTTTTTCCACCTTGATAGTTTT------CTCTGAatagaacaagaagtcaacagcAGAGACAAACATGAGATTTTTGGCTTCATAAAAGATTTTAAACTCATAAAACAGTGTGAATTTCATGTTTTCCTGGTGTTTCATATAGATTTCCAAATCTGTTACAGTCAGTAAGTTATGTTGACtgcaaaacatttt-attatgcCATCAACAAAGAGTTATTTAGAGATGTATAGCATCTCTATTAAAGCAGTATAACACCTAGAGTAATAGCAACCTTGTATATAGTTAACAATAAATCTTGCAGCCTTGATTTCATAATTTTAGAGGTGTGAAGAAAAATGgttattta-atagtttttaatgtGGAGACCACCACTTAATGGCCCATTAAAATTGGGAATGTCAGCCAGCTTGGTTCATACCATTTTGAATGAAAGATCTCTACAGAAACAGTATGAGTGTGTCTGAACACTTCAACAAAGTAAACCATTGAATAGTTGATTAAAAACTCAGTATATCCTGTAGATATAGTTGAGATAAATCGGT-------GACAATTCATGAGACCATCTAAACCTCCAGAATGAATACACTGCCTGAAATGTTAGGTTCTTTTTTGTCCTTGTCTAGTTGCAATCTTATTGAGATGAGCAAATTTATCCTGTGCTTTAGgtaattat--aatataaata-aagaattagaattaataaaaactaaagcAGGAGGACAAGGATATAGTCATTAAACTGCA-TTGGTCATGAGTTCTGAATATGTAAATGATTGCATTGT-AGATAAGACACCTGAATAAGCA-GTAAAGCAAATATAAATAGAGAAGTATCTGGTGTGTTTGTGTAAGACAAT---GTTATTAATAGAAGACAGTAAGTTCTGGACTTCAATCAG--------CTCAATGTCATACTCCAAATCTGATTCTATGTTTTCCCTCAGGCTTCTGATAACTACTT-CACTACCAGTGTA--------ATGCCTTCATGACATTTA

a score=15396
s chr3            99650152 557 + 160039680 GAATCAAATGATGCAAAGGCTGTGAGATTTTATGAATTGAAAATGTACTACACAT----TTTTA----TTTTATTAGAATTGTTATGAATAGTGCCTAAGGAGTATAAAGAGAGACAATTGAGAAGGAAGAGCATTTCGTGAATTCATAGCTTCTTTACGGGAAAAGTAATGCAAATGAATACTCCAAGATGAAAAGCCTTAA----CACAGTGCTTATTAAGGCCTACAGGCATAAGCATGTG--------------------------TGCCAAAGCAGTTAAGTACATGGTCTGATTTCATATGATTTATGGAGGGATTTTCTTTCATTGTTCTATATTAATTATTATTTACAAGGTCATTGTAAAAATGAGATGTCCTTTTATAGCAAAGCCCCACAGTCAATATTTTATGGGAAACACATGAGAGG-TAGGAAATTGATGATTTATAGATCAGGAAGTAACAGTTAATCAACGTCTCCAACATCCCAAGCCATAAAGAGCCGTTTTGTGTCA-CCTTTGCTTGTCAGGCCTCTTTGTACTAATGGAGATACATTTGCAGTGTTAGGTGGGATATGTGCACTCTCAGAGGAGC
s HiC_scaffold_1 109557576 570 - 233722169 GAATCAAATGA-----GTGTGACAATATTTTAT-------AAACGTGctatatataatcttttaaaatttttattaaaataactacTAGTAGTTCTTAAGGAA---------AGAATATTGAG--GGAAGATCTTTCTACAAAAGCCTAATTT---TGTAGTTAAACTAAGTCAAATGAATATAATGAGATGGAAAATCTAAAATCTTAAAATCTTtaccaagacacacacacacacacacacacacacacacacacacacacacacacattcccggGCAGCTAAATTTATAACTCCGCTTTGCATGGTTTATAACAGAATACTTTTCCCTTGTACCATGTTCATTACTATTCACAAGGTCATTGTAGAAATGGGATGCATTTTTATAACAAAGTGCCACAGTtcaaattttgtagaaaacacaCATGAAGCTGGGAAATTGATAAATTATAGATGTGAAAATAACAGGTAATTAACTTGTGTAATGCTGTAAGCCATGTTGGACAGTTTTGTATCATCTTTTGGTTTTCAGGTCCGTTTATATTAATGGTGATACCTTT-TAGGCTGAAACAGGatatgcacactcttgcagggac

a score=26362
s chr3            99651714 1061 + 160039680 ACTAGTTGATTATCAA--GACTCTGGCATTGATGATGGTTGAAAGACAAGT--TAACTCTTTCCATGTCTA--TCTCCTGCCACACTGAAACTGAAACTGGTCTGCCCTTGGTCCCTGGCAGTCCCATTGTTGCTTATTATACAGGGCACCAATTAGGTTT---GAACTGTGACCTAGTCACAGAAGGTAGCT--TAGTTAACCACTCTCTTTCCTTGAAGGTCTTTCCTCAGTTCCTCC--------CTGTGGCATGCACTTCTGGATTTCCTGTCTTTCTTCCTGTCTCCTTCTTGATTGACTTTTCCTTTA-------ATAAC----CTTGTTTGCTCCGGTTGTTTTACAGTCTTTTCTTCT--CTTAGTCT-CAGTCTGTACATCCTATCCCTTGGGGTTCCCTCATCTCATCTCAAGATTCCATTCATCACTTACTCTGCATTCATGTGAAAT-TTATCTCAAGATTTAGTCAACACTT----CATTTTAAAGTTCTAAAG---------------------------------------------------------------------------------------------------CAAAGCA---------------------------------------------------------AG--ATCTTCCAAACAGAAA----------------------------------------------------------------ATAGATGCCTGTATGACTGTGTGTCTGGCAACACCCATGCTCTTGTAGT-TATCTATGA----AAATACATTCAGACTTATTGGAAAGCCTGCTCATTCTCTCTC-ATAGCTTGTTCTCTACTTTACCCTTCCTGAGATTTCTCTCTGAACTTTGCCTCTACTCCATTCTGGAAATAGCTGACAAGCACTTCTTTCTGGCCAGAAGAAGTTGTCATCAAATTTCTTACAAATTTCTCGCCATTCAGAAAGAGTTTATGTTTTGCCAAA-GAATTCACCTTGGGGCCCTTTCAAATAACCAATTCTCCAAGGAAATTTAGTATCTGATTCAGCTAATCAAAATTAGATTTACTCACATTTGGAAAACATATATGCAGTTTTGCCT----------------------------------------------CACTGTGTATAGCTCATGTATCCTTGAAATATGTGCAAATCATATCCTTGTAAGTTGATTGATGGTTCCAATGCATTAATCAATTTGCTAAGGAAAACAAAAA-ATACTTTTGTAGTCAATAACAAGCGTGTAACATATTGGTTGTGTAAATTTGGATTTCATGCATTGAATATACTTA-TTTTGAGGGCAT
s HiC_scaffold_1 109558993 1328 - 233722169 ACTAGTTGGTCATCAACAGCCTCTAAGAAAACTTATATTTGAAAGACATGTGTCAACTATTTCCATACCTAGCTTTCTGGTCACATTAAAACTA------TTCTGTCAAGAGTTCCCAATGACCCCTTTGTCACTGAATTTAAAGGACAACTCTTGGATTTTGTGCAACTTGACTTATCTGTAGCAATTAAGTAATAGTTGATCATTCT--TTCCTTGAAAGGTTCTTTGTACTTTCTCCTATAATTCCACAGACCTACGTTTCTGCATAGATCGCCT-------------CTGCTCGGTCCGCTTTTCTTTTGCCGTGCTGTAACTCCTCATGCTTCCTGAAGGTGCCTTCCTTTCGTTCCTGCCTACTTGGTCTACACTCTG------------CTttgtgtgtcctcatctaccctCATGTTTTTAAGTATCCTTCATACTGCCTTCAGATGTAATGTTTTCTCCAGATTTAGTTAATACATACAGcacttttaatttctaaaatgcagttaacacacacaaaagaaaaaatatcaaaatccaaaaaaatacagtaatatcttggttcatgaatgcttttgtttgcagaaAATTCGATTCATCCAAAGCATTTGGCACAATttcacttctgtttgcaaattcTACATCGAGTGACAAACAAAACCTCAGCCATCTTCCACACACAAATACAGACAGAGCCATCTGTCCccaaattgaaaaacaaattacGATTGTAAACAGAGGTACCACTGTACATGTACGTATGATTTTGTGTTTGGAAAC---CATGTGTCTGTCATCTAGCTAAGGTCAGAAATTCACACAGATTTGTTGGAAGGTCTGCCCACTCTTTCCCCATAACCTGCTCT-----TTCCCCTCCTTTAGCTTTTGCTAC--ACCTCGCCCAGACAGCACTCTTGGGAAGCTCGACAAGCACTTATTTCTAGCCAGCAGAAGTTATCATCAAGTTTCTCACAAATTTTTCACCATTCAGAAAGAGTTTGTGTTTAACCAAAAGAATGCACCTTGGGGCCCTGTCAAATAACCAGCTCTCCAAGGAAATTTAATGTCTGATTCAACTAATCAAAATTAGATTTACTCACATTTGGAAAATATATCTGcagttttgtcttattttgggTAGCTAATATATGCTTGGAATATGTGCAAATCAGACACACTTTGTGTAACTAGTATATCCTTGAAATATGTGCAAATCAGATGTATATAAGTTGAGCAATAGCTCAAATGTGTTAATCACTTTGGTAAGGCAAACCAAAATACATTTATGAGCTAAATAACAGGCATCTAATATATCTGTGCTGTAAACCTGGAGTT-----ATTAAATGTACTTGCTTTTAAAGGCAT

a score=41984
s chr3            99652806 1446 + 160039680 AAAGCACGATCAACCCTAG---AGAGACTGCCAAGTG--GGGCATGGTGCCAGAACTGTGGGCTCCTGTTATCAGCACAATTCAAGCTTTG--TTGTTTTGTTTTTGTGGGATAGACAGTAGGTCAGAAAAGCAATGTGTGTGCCATAATACCTGAAGTTTCCCTCCCCATAATCAAATGTTTCTTGCATTTGCTTTATCCTTGTGGTTATTACCCATGAAA-TTCATAGCAAACAGACTCCTGGGAATTGATAC------------------------------------------AGAGC--------CAAGATTGTTTTGTATTAGCTGAATGATTGGTACAAAACCCAACTGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCGCGCGCGCAAAGAAGAAGGAGACAGAAAGAAAAGGGAAGAAAGAG-GAGAGAGTAGAATGGAGTGTGATGAATG--TTAGTTTTGTTTCTCT--CTTTTGGCTAATGTAATTTAGTTTAAATGACAAACTTGCAGCCACTTGAGGCCAACGGGGTATTGACCACACCACTAGCAAATGAGCTTCTTCACCCC------------------TGGCTGGTTGTTGAGACAGCACAAATCAGCCCCTGGTCTGTAGGTTCAG----------GAGTTTCTTATCTGGAAACATAATGAGGTAGGCACGACTTTGAGAAGTCCTCAGCTGCATCAGCATTTGGAAAAC---TCAGAGCCCATCCTCCACTATTGATCATCTCT-----AGCCATCTCCTACATTGTATATACCCTAGGCTCACACGGGCCAGCAGATATGAACAACAGCCCTTGTGTTGATAACTTGGCGGGTGTGGAAAGTCAGACACCAGGAAGCAACAAGATATTTCCCTCAGGGAGACCTTGGCTTGGGGCTTCCCTCCCTTTCCTATGTCAACACAGCCTTCATTTCCTAACTGGCAAACCACAGAATAAGCCAAATTCCTCGTTTTTCACCGTCCCCTCTGGATGGAAAGGGCTCTATTAGCCAGAATTTATATAG-TCAGCCGTGTTGATTTTACTCTCATTAATGGCTCCAATTCATAAAAGGT---ACTGGAAGAAAAATTTAACCCATCTGAAAAATAAGCAAATACATGAGCTCTCGTTCATATCCCAGATATGCAGAACAAACAAAAACCTCTGAGGAG---TGGCCAATTATGTTTCACCTCATATATGGAATTGAGAATACACTGTATGGCAGCTATATAAGAGCCTATACCCTATGTGGAAAATAGTTAACAAATCCACGGCTAATGTAAACGAATACTTATTTAGGAAATAATGAGAAACTATGACGTGATTCCAAATAGGCTGAACAACATTTTCAGTAGTATAAAACTAAAAATCTTTATTTTCTTTATTTTTTGAAAGGAAGAATGGCATATGAGGATGAAT--ATAAGAAAATAT---ATATTCCATACTGTATTTCATTAAATATCTACATACACAACTGAA---CCAACAGTAAACATATACACGGAAGGCCAGTCTGCCTATTTT
s HiC_scaffold_1 109560822 1481 - 233722169 AAGGGGCTATTAACACTTGTTAAGTGACTGCTAAGTACCAGGCATTACGACAGGAATGACACCTCCCATTATCAGAGTGTTTAGAGTTTAGCcttgttttatttgtgtgtgaTACAATACAGGTCAGAAAAGCAATTTTTGTTCCACA-TGGCAGCAATTTTGCTCTTCATA-TCAAATATCT-TTGAGTTTACTTTTTGCCCAATGCCATTACCTAGGAAAGTTCATGCCAGACAGATTCCTGAAGGAGTATACTTTTTCTAATCCTTCCCTCATTTCCCAAGATAAGGGAAAAGAAGAGTTCTGACAGCAAGCTTATTTTCTACTAGTCCAGTTATTGGTTCAAAAT--AACTATTATGTGtataggggagagagag--------------------------agagagagagagagagagagagagagagagagagagagagagagagagagagagagagaagaaagacttGGTTTCATTTCCATGACTTGAGGCTAATTTAAT--GGTTTCACTGCTAAACCTGAGGTCATGTGAGGTTGCC----TTTTCATGTCTGCAGTTACCTGCCAACCTCTTTGCTCTCTAGGTTTCTGCTCTTAGTGTCCACTTGT-GATAGAGAAGAGGGCAGTCTGTGGACCACAGCTTCGCTCATTCCACCAAATTTCTCATCTAGGAGCACAATGAGGTATGAAAGACTCTGGAGAGTATTTAACTGCATTAACACTTAGAGAAAAGATCAGACCCCACCCCCTGTTCCTGATTATTTTCCAAAAAGCTACACCCC--------CATCCCCCATGCTCATGTGGGCCAACAGATA-GAACAGCAGCACTTGTGTTAACAACTTGGCTGCTGCAACAAGCCAGACCCCAGGAAGCAACAAGATATTTCCCTCAGGGAGGCCTTGGCTTGgggcttcccttcctttcctatgtCAACAAAGCCTTCATTTCCTAACTCACAaaccacagactaaaacaaatttttgttttttcacctTCCCTTCTGGAAGCAAAGGGCTGTATT----AGAATTTATACAGCTAAGTTGTGTGTATTTTACTGTCACTAATGGTGCAAATGCATAAAAAGTTAcgctttaaaaaatat-------atctgaaaaat----aaatacatgcactCTTGGTCTCATTCAGGA-atagagaacaaacaaaacactctGAGTAGAAATATCTAGTTATGTTTCACATAGTGTAAGGAATTAGGGATAAATCATAAGG-AGCTACATAAATGTCTACACTCTATGAAGAAGATAGTTATTAAATCATCAGCTGATAGAAATGcatgtttatttattaaataatg-ggAACcctgaaataatacaaaatgggATGATAAAATTTTTCAGGAATGTAAA----------ctcatttttgttgcttttgaaaGAAGAGCATG--ATAAAAAGATGAATTAACAAGGAACTATCAGATAGTTAGt--tatgttttattaaatattcacATAGGCAATTGAATACCCAAACATaaacagacacagacatagtCTGTCTGTGCATCTT

a score=26909
s chr3            99663666 997 + 160039680 TCTGCCTTGCTAACTCTAGTGAACTGAGGTTCAGCAGATCGGGAA----CAGTTCTTTGCATGACTTTGCTTT-----GCAAACTTGGGAGGTCATTCTTCCCGAAACATAAACAACCAGAACTTGGCTCTATCTAAAAAAGAACTGGGATAGTGATGCAG--GAAGCTTTACCAAGAGTGTGTGGTCTTGAATGTATGGTTTGACCAGTGCACAGAGCCTGAGAGGATGACACAATCTTTATCTAAACAAGGCTTGGCTTCTC----------TCTGTGGGGAAAGAGCACAGC-----TCCCCAGCGCCAGCTTGTCCTCTGATCCCGTACACATGCACTTCATTGTGCTAAAGCTGTAGAACGGTGCGGCAGTGATTTATGAGGCCCGTGTTTCTTTCCTGATCCAGGCTGCCACATTGCTGGAGG-CTTGCTTTTATG--TCCATGTCAG-GGGCAACTGGCAACCAGCTGTTGGAAACTGGTTTAAGAAAATAATAAAAGTAAAAATACGCATGGACTATCCTGTCATTGAAGGTTTCTGGTACCCACCACCAGGTTTGGATACAGTAAGAGAGATCCCCCCCCTTGGAATGCGATTTCTTTATGACAAATAG--ATTTATATTGTGCTGGAATGCTTGCTAGGTACCAAGAGGTCTCACATAAGGGCTAAGTTAACAATTGAGATTTTTAGAATAATAATTCATATGG-CCCCACCTCCTTTAGGCCTAAA------GGGTTCCTAACTACTACATATGTATGAAACTACCACAGCACTGGTTCCTCTTCTCTCTCTCTGGGGTGGAATTTAATAGCCGGGAGACTAGAGTGATGATACAAGTTGTCTGCCGACTAAGACACTAAGATAAGGTGCT--------------AGCCAATACAGAAAGAAAAGATCCCATTGTCTGAGGGC-ATGGCACTTTCACAGTTATGGACTCTGATACACAGAGAAAGAAAGAACTCTCTTTGGGAACAACTGATGCTTTGAAT-TTCTAGGTATAGAACCTTCATAGGTATTTTATGAACTGT
s HiC_scaffold_1 109570544 989 - 233722169 TCTGCTTTGCTATCTTTAATAAACTGCTCTCCAA-AGGTCAAGAATGAGCCATGCtttactcatctttttttttttttgcaatctcAAGAGTTCAACCTTCCTCAAGCTCAAAC---TGGAACcaagatct-tttaaaagagaCAGTACGTACTCTCACAAACGAAGCCCG--TGGGAATGTGCAGTCTTGAATGAATGATTTGATC--TGTACAGAG----AGAGAATGACAGCAGCTTTATCTGAACTATTTCTGACTATTTCTGGCACATGTCCACAGGAGAGGTGCACCGTCTTTTTTCTCAGTCACAGACAGTGCCTTCATTCCATGCACATGCACTTCTTTGTGCTAAAGCTGTCTAATGGTGCAGTCTTGATTTACGAGGGCTGTGTTTCTTCCCTGATTCTGGCTGGCACAGTGCTGGAGACCTTACTTTTATGTCTCCACATCAGAGGGCAACTGGCAACCAGCTGTTAGAAATTGgttcaa-aaaataacaaca--aaaaatactcTAGGAGTCTCCTGTCACTCTAGGTTTCTGATACCTGCTATCAGTGTTGGA-ATAAATAGAGAGTTTTACCTCTTTGGAATGAGACTACTgtacaacaaaaagaaatttgcaTTGTGCTGGAATGATTGCTAGAGACTGAGCCATCTCACCAATGGAATAACTTAATAACTGAAATTTTTAGAATAATAATTCACAGGATTCCTACCCATTTTATTCCTAAGGCATTTGGGCTCTTA--------------ATAAA---------------------CTTAGCTATTTCCAGGGTGGAGGTTCATAGCTGGAAGAC-----TGATTGTAGAGAGACTCTGCTGAGGTTCCCACCCAGGAGAAGGGTTACGATGGAATCAGGAACCACTgcataaagaaaagaagagattttTGGAGGACGGTGATACCCTCACATATGTGAGCAGtctaagagagagaaaacaaga-----ccTTAATGACAA-TGATTTTCTGGATGTTCAAGTTGCATATCTTTCATAAGCATTTTGTATACTGT

a score=78669
s chr3            99664692 2706 + 160039680 ATTTACTCATCTGTTCATAAATTACTTGTTGCACAATTTCAAGAGAGATTGAGATGTCTTGCACTGAAATGCATGTATGATAAGACATTTCACATTTAATAAGGAAGTAAAAAATATGTTGAGAAAGGGGGAAGTCACCATATAGAAACTACTAGTCATCATTAGTTAGCTTAAGCAGTCACTTAGAACTGCTACGTGTAAATATGGTTTTTGAAAGGGTTGTCCTGTAAGCAAACACATAAAGTAAGTCTAGGTGGAGAAAAA---AATATAT-TTTTTACTACAACCCCCC----CCCCAGAATTTGCTTAGAAGCACTATAAAATTAAATAGGAGGGATACAAGTGCCTACT-TCCTCAAGGTGTTTTGCCGAATGTTTAT----GAAGATGAGGCAGTGCCAAAATGATTTCTTGAATGGAGCCATAATTTAAACTCCAAACTCCTCCAAAATCAAGAAGGACATGTT------------------CTCTCTACCTTTACAGTTGGGGTGGCCCTTAT--------------------------------Gttttttttt----------------------------------------------------------tttttttt--------tttttttttttACTTATTGTGGCA--------------------------------------------------------------------------------------GACTTTGCACAAGTATTTACTGGT----------------------------------TACAA------------------------------------------CCAGCA---------AGTCTAACCAGCAAGTCTACCAAAA-------------GCCTGGGGCCTGAGCTATCTTTCTGA-------CTCGATTTGCAGTCTGGAGGC-CACCACACTGGGATTCTGCAGTTTTCTACCCTCTGTGCCTCTCTGACGGAGGGTCCGCATGTCACATCTGTCTTCATGTGTCCCATCATCAATTCTCAGGAGCACAAGTTCTTCTCTCTGCATTTCCCTGGGAAATTGTCTGCCTGGTGCCTTGGGGGTGCTCTGAG------------CCTTGCTGCTCTCGGGGACAGTGGTCAGCATTAAGGAGGAACGTTTCCTTGGCTGTCACGGGCCTGCAAAATGTTTACCTCTGAGGCCAGCTCCCACCCAGTATTCATCACACCATCTCTGCACTTCCCAGTAGATTATTAACCATTTTGGCCTTCTCTGTCACCTGTTGAAATGGGAACTCAAGGTCTCTGGGCCACTGCAGCCCTTTCCCTTACATTAACCTAAGTCACACCAGATGTGGGTCTTTAGTGTTTAGGAAAACTAATTGATGTCACCAGTCACAATCACAATACTTCTACTGTTGTGTTTTCTTaaaaaaaaaacaacaacaacaaaaaaaaaaaacaaataaaTAGTTTGGTGTGTTTTCTCTCCTTCACCTTTTTCTGCTCTGGCAGAAAGAGTCAAAGTTTACTCAATTAAAAGCATCCAGAAA--GTATGTTGAAAACTTCATGCAC-----------AATGAAAAAAAATTAAGATGAAG--GGAAGAAAGGAGGAGGATAATATGTTGTAGGGAAGAGGGAAGGGAGCCTCCCAGGGACCAGCAGTAACTCTGATGGATGGCCGGTGTGTGCAAGACATTATTATTTGTTATGTGAGTGTGGGGAGATGGCAGCCGAGCCGAGCAATACACCTGCTGAGCTCCAAGAAGCCAAAACAGCTGCATGCATTGATTTAGAAGCTTGCTACTTGGGGCTCCAGGAACGAATCAAGCGACAGCTCATAAAAAAGAGGGTTTTATGA---TCCCCCCTCTCTCTGTAAGCAAACAGCCACATCATATGTTTTCCTAACGTGGTCATAACTCAAAATTAAATCCCAGCCCAAGGTGTCAGCCTGGTGCCATGTCAAGGCTGTAATGGCTTGTTTTAAAGGTTGCCATGGAGACAGTGGAGGAAGGATTGGGGGTAAGTTTGGGGAGGTGGCAAGGGGCAAAAGGTGCTCTTCCCCTTGGTGTGACTTAGGCACTTAAGAACAATTAGGTGTTTTGTTCTAGAGAGGTAAGCAAAGTTGGCAGTGTTTAGGCAGCGATTTCACGCCCATTACATCCCCCAGCCCACACCGTTCAGACACCAAGTGCTGC--TCACTAGAGAGCTGCCCCTGCCAGAGTGGGGGAAAGGTGGGCTATAGGACTGCTAACAAGAT-AGGACAGTGTGAGCTGCTCTCACTGCAAAGTTGGTCACTCATTTCTTGGAACGGGTTGGAGTCACAGTACTTCTGCTAAAGGCTGAAGGAAAGTGGGTGCTAACACAGCTAAAGCAGACT-------GAATACAC---AGACTGAAATACTGTGGGCTTCAATGATGGTGGACAAAATCTCTATGCAGT------------GTTTGCTTGGAAGGTGAG-CACAGAAGCAGGT-AGCCATGCTGTGGGCTTTGACAGCACCAGGATATTTATTCACACTGGAA--ACAATGCCTGAGCACTAGAGAGCTTGGAATCTGAATGCCCTTAGATGTAAATAAAGGAAAGAGTGCCT--GTGAATCACAAATGCCTGCTTTGTGGCTGATAGTTCTTTAGCAATGTAAGCTTG-------------------GCTGCTCTTTTTAAGCTCACATCACCAAGTCTCTGTATAATCCC-CAGGTTCTGCCAGTAGTCTAGCCTCTTATGTTGGCACTTTTACCACTGGCAAAGCCATTCATTAACCTGCTCTTTGCTACCATTTCTC---TAATACCCTAGGTGTCCTCTCTCCTGAATTCATCCTACCTTTC--TAACTGCCTGTAATATTTATAACTTAAATGTCATAGCATGATCCGCC--CCTTCCCTAATCAGTTTTTAATTCTTATTTTCTGCTTT-------------ATATTCATCTCAGTCACTAGAATTCAAAATATCAGATGTAGTTCTCGCTTTCCTCCCTCTAGTCCGATAGACATTGCTCCCTCGGCTTCTCTTTTCAGATAGTCT----CTGGAATCTACA
s HiC_scaffold_1 109572083 3010 - 233722169 ATTGTCTTATTTGTCTAGAATTTATTTCTCGAATGCTTTCAAGATAAAT-AAGTTTATTTGCAATGAGATACATGTAGAATAAgacaataaacaagtaaataggaGGTGAAGATCAT-------AAGgaggaaataa--atataaaaactataagCCAGTGCTTGTCAGCT-----AGTTATTAA--------ATGAATTAGTAT--TTCTTGAAAAGTTTGTTctgtaattaaa----ttaaataacctGAAATGATCAAAAAGTAAACAGATATTTTCACTGTGAATTCCCATGATTCTTTAATTTGCTGAAACTTTCTTTAAAGTTCCAAGAGAAGAACATCACTGCGTGCTGTTTTCATGGTGTTATGCATAATATATATTGTAGAAAATGAGCCAATACCAAAACAGTTTCTTAAATGGAACAGCAATTTAGATTCAAAGCTCTTCAGAAATCAAGGTAAAAATGGTATATAACATGAAGGAATACTTTTTACTCTGTGGGTGAGAATGATcctcattaataaataaattttaaagacatctGTCTCATGTATTCTTATCCAAGGCTAATAAATAATATGAACTTTGAGCAGTGATTTTGCAGATAAAGCATACATATTTTCATTATGGGTACTTTCTATTTAAACCTATAATAATATGCAAAAATCTCAGTAGGGtatcaaatataaaatctttaaGCTCCTTGaaagtgtaataaaaatataagaaatccaataacatttgaattttagataaacattttattataagtaTACAAATATTGCATAGAACATGCTTATACTACAAAAATACTCATTCTTCAgttgaaattcaaattaaattgtGTATCCTGCATTTTTTACTAGCTAAACCAGCAAATCTACTAAAATGTCAAGTTCCATGTCTAATGACTG---TATCATTCAgaagtttcttctgtgttacaaTCGCCATGCATAGTACAGCCAGATT-----GCTTTCAATTAACT-TACCCCGATTAT--AGGATTCACATGTCAAATCTGTCTTCACATGCCTCACCATTCATTCT-GGGAGTTCTAGGTCTTATCTCTGCACTTCCCTGGGAAATAgttttgttgatcctttggaatAGTCTCAAGTTGGCACATGGCCTTTAATTTCCCTGAAGTCAGCGGTCATTCCTAAGAAGGAACATTTAGTTG-TTGTCACGGGTCAGCAAAGATTTTAGCTCTGAG-CAAGTGCTC---CAGTATTTATCACATCATATCTGCACTTGT-AGTATATTATTGGCCTTTTCTGCCTTCTCTCTTACCTGTTGAAATGAGAACTCAAGGTCTCTGGGCCTCTGCAGCCCTTTCCCTTACATTAACTTAAGTCACACCAGATGTGGGCCTTTACTGCTTAGGACGACTAATTGATTTCACTAGTCACAATAccagtatt------gttttatttttt-----------------------------aacacaaaTAAACACTATGCACAGTTTTATCCTCTTC-CCACTCTTTCCTCTTACCAAAA----CACAGTTGATTTGATTAAACTCATCTAAAAAAAGTATGATGAAAACCCCATGTACGTAGTGTATGTattgttaaagaagaaaaaaaaagtagaaagaaaggaggaggataAAGGCTTgtagggaagaaggaaagaagcctCTCAGGGACCAgcagtaattctgatggatgGCTGGTGTGTGTAAGATATTATTATTTGTTATGTGAGTGTAGGGAGATGGCAGCCGAACTGAGCAATACACCTGCTGAGCTCCAAGAAGCCAAAACAGCTGCACACATTGATTTAGAAGCTTGCTACTTGGGGCTCCAGGAACGAATCAAGCGACAGCTCATAAAAAAGAGGGTTTTATGATTTTCCCCGCTCTCTCTGTAAGCAAACGGCCACATCATTTGTTTTCCTAATGCGGTCATAATTCAAAATTAAATCCCAGCCCAAGGTGTCAGCCTGGTGCCATGTCAGGATTGTAACGGCTTGTTTTAGAGGTTGTCATGGAGATGGTGAAAGAAGGATGGGAGGCAGGTT--GGGAGGTGGGAAGGAGT--GGGGTGCTCTTTGCCCCGGTGTGGCTATGGCACTTAAGAATAAttagctgttttgttttaaataggtAAACAA-----GCGGTGTTTGTTTGGTGATTTCATTGTACTTATGGCTTCTAATACTTGTTGCTAAGATACAAAATACTGTCGCCCCCAGAGAGCTGCCCCTGCCAAGGTGGGTGTGAGTTGTGTTGCAG--TCACTGCCAAGATGAGGACATTCTGCCTTCCTGACGCTTCAAAATTGGTTATTGATTACATGGGATGGAATGGAGCCA-------GTTAGCAAACATTGAGTGATCGTGACTCCT-ACATAGATCTGTCAGATTATCCCAAAAATACATAGAAGATCAAAGTTCT-TGGGCCTC-ATAATTTCAGAT-AAATCTCCATGAAATAACACTCCAAAAGTTGTAATAGACTGTAGGTCATCAAAACATGTAAGCTCTTATGTAGGACTTGCGAATAGTGTAGATTTCgttcatttttaaagtatagtTTCTGAGGATTAATTAATTTGAAACCAGAAGGTTCCTAA--GGGGATAAATGAAACAATGGATAAGTGAAAACACAGTACATGCCTTATTGCTATTAGTTCCGTAACAACACGATCATGGCAAAAGAGAATAACTAATGCTGTTCTTTCAGACCCCAAATCACCAAAGCTCTGTATAGTCCCGAAGGTCCAAACATTGGTTTAGAATCTTATGTTGATAATTTTGCTTGCAGAGAAGTCATTCATCAACTTGTTCT---CTATCATTACTCAGAAGAGACACCAG----CCTTTTGCTTGAAGTC-TCCTGCATTTCTATAGTTGTCTATAATGCATTTCACTTAAATTTCatattatatttcttctttctccctaaatcaactttttatcttcattttctgctttttcttatGGCATCGTGTTAGTCATTGTCACTAACGCTCAAAATATCACACATAA--CTGGCTTTTGTACCTAGATTCAAATAGCCACTACACACTC-TCTGTACTTTCCACATTATCTGACACTGTAATTTGTA

a score=19558
s chr3            99686656 774 + 160039680 TAAGCACACTTATTTATATGAATGCATATATGAGAGCATATGTAAGGATGCTAGCAGGGGACTAACAAATG-ACCCAAGACAGTAGAGGG-AGAAAAAAAGAA----------------------------CATGAAAGGAAGTCCGAGGGAGAAAGTGTCCAAAGACAGATGCTTTCCTT-------GCCTGTAAATTTGTGAGCATGTCTGTGAAGTTGTCCATTATACATTCATGTTTTATCAGTCACTCAACATGTGTTTATTGGGTGCTGGGTATGACACTCACATCACGCTCAAGGTTATGAAGTTGACCCCAGGGGTGAGTATTGCATTGCATATAATTCTATCCCTGGCC-------------TTGGA-TAAGAGACAGGCAGTCATAACTGAAGGTAAAGGAGAAGAGACAGGAGGCTCCCATGTGTGGCTCTAGCTGATTGAAACCATACACTTTCCCATGAAACATTCATTCCAACTTTACTGTCAGAAGATAAAA--TACCCTCTTCTACTTGTCTGTGTGGAGA-----TATAGGTAATACTACTGTCACTGGGTGGAATTTAAGTGTAAGATGGAGCCTCTTCCCTGGTGCTCACAATCACCAGGCCATCTGGATGATTAACCAAGCAGCATTTG---GGGAGGATTGCTTAGGGTGTCTTGAGAGCGAGTGTCACATTTGAAAGCCAAGGGACAGAGGCAT-----GAGAACCAGGAGATCTTG----TGCTTTTGTAGCATGAGAA-TCAACTTCCAAACTGGGTTGCTGGGCTACTTAGGAAGACATGCATGAGACAGATAGAGTGAACCTAATTCTCTACCACCCAT
s HiC_scaffold_1 109588973 829 - 233722169 tatgctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggtgcaAGTATGTGCTTACAGAATGCACATTAAATGGCAAAGGGCAGAAAAAATGAATCCAGACTGTGTTTTTAAAGCACATGTACTTGAAAGAGAATCTGAAAGAGGAAATTTCTGAAGACAGATGTCTTTTGTACCAGAAGCCTGTAAATCTGTGAGCATGAATATGAAGTTGTCTATTATATATCTCTGTTACATCAGTCACTCAACATGTGCTTATTGGGTGTCTGCTATGACACCCACATCATGCTTACAGTAATGAAGTTGATTCTAGGGGTGAGTATAGCACAAGATTTAATTCTGTCTCTACACTAGTTCTGTATTTTTGGAGTACGATTTTGGCA-TAAGAATT---GGTAAGGGAGAA-------GAGGATTTCATGTGCACATC-AATTGATTAAAACCATACTTTATCCTGT-AGACACTCATTCTGACTTTACTTTCAGgaagtaaaaattatatttttccttcagttCATGTGGAGCTGTTTTGTAGGTAACACAGTTTTTTCTGGACAGAATTAATTTATATAATAGAGATACTTTCCTGTTCCTGTCAAGCACTAGGTCATTTGGGTAATTAAAAGAAAAGTACTAAGATGAAAGGTTTGGTTGTAGTTTAATGGAAATTAGGTCCAGCCTGAAAGGTAGAGAAGCAAGAATATTCAGGGAAAATCATGAGGCCCGGAAGCTGGTCCAAGAGCTTTAGGACTCAACTTCAAATCAAAAGTGCC---CTTGTCAGGGAGACAAATATGGAAGTGACATCATGATTCTAATGGTCTCCTCTCCAT

a score=77597
s chr3            99707881 2711 + 160039680 GGGGCTGAAGGAGTCCAACAAAGGTACTGGGTTAACTTCAGCATTATTGTGTCTT-AGTGCTTG--CTTAGATTATTTTCTCTGGAATATTCAGTATCTGCATCCATGCTGTTTGGCCCAAGGAAAACAGAGCAGCCCCCTGTCCCTGCTGAAAGGAAATGAAAACTTGGCTGATACTAGGCAGATCCCCTTCAGGGATCAC---CGTCTG-GTACCAGATATTGCAGAGTGAGTAATGATTTTTCTCTTCCTTAGATTT---------------CAGAGGGGAAAGAGGCAAA-CAGGATGAAGAATGACGAGGAAAAGCCTGGGCAGA--------TTTAACAATACAGCCGAGCAAACTGCATGCAAGGAAGAAGACCGAGACAACTAACTCAACATCAAACATGCTTCTGGATGGAACAAACCCTTTTA-TTCATATGAG-TCCCACCGTGATCATGCATTTGCCATGTCTGCTTTGTCACTCAGCATTAGCTTATCAAAATTGCCTGAATTACACTAGAGAAATCAAGAGATAATAGGAGATTATAGGAAACCTTACCAATCCCATTCCTACTTCTGTTGTTAATTCATCAACCTCTGACCTCAAGATGTGATGAAACTTCATAATACTACTTTTTAATTATTCATCAACCTTCGTAATCTAGGACTT-------------AGATGCATTGAAC-AAGAGGTGTGAGTACCGGCATGTAGATTCAATTTCTTCCTCTCTGCTTCTCCCAGCATGT---TTTCTAATTAATGACTTTTTTTTTATGAGGTTTATGAAgttggaatgcctgttgtctcatctgttgacatagttgcttttccagatctgactgtctaggc-agtgtctgttttctctctcacttcctcacgtgtgtTTTAAATGGTTCTGTAACTTAGAAGTCTCT--GCCAGAGGCT-GTGAACTTTGAAGG-------CTTTGCTCAGCAACATCAGCCTTGGTTAGAGATACAAAAGTCATTTCTCCTCCTTAATTTTCAAGACCAATTCTGGAATCCCATGTGCTAGATTCTCAACAGTTTCCCAGTAGGTTGTAGATCTT---------------CCATTGACTGGAGTTTTAAGTTTA------GGATAATTCCCAGTAAGTGTTTTGCAGAAGAACTTGGAAGAAACAAAAAGGTAAAATACTTAGAGGTGTAGTGTACAGTTAAGGTTTCAAGCATCTGACATCCAAGAATAAAATCTTGCATACATGAGGGCAA-GCAGGTCTACCTGGCTCAACCACAAAGTAATTGTAGGTCAAAGATCAATCATAAATAAGAATAGCAATATTGA----GTGAGTAGACAACCTTAAA-AATGGTATGAAGCATTTGTTTCTAATTTCAAAGAGACAACAGAAAACCATGTAAATATCTAGGAGCCTATTAACAGATCAAAGA-GAGAGAAGTGCT-----TACCAGTCAAGGCATTGGAGGGAAATGATTGAGAAGGAAGACTCTTTCTACTGTTAAAAG-ATATCCAG-AAGGATGGGCAGCAGATGAGAAGAACAATATTGATTTTGTAATATCTTAGGTGTCATGTGATTAGAGAAGACCCAGGCTAAAATATAGATTACAAA----ATGACAGGAAAGGATT-CCCTGGGAGGT--CTGAGGTAGGGAATTGGAAGACTTAGAGACACACTAGT---AGAAGTATTA--GAGTAAGAACTATGGGATACTTACTATAAGGTG-TATGCCAAAGAACATAATGTAAGAATGCTCTTGACCTGGAGGGAAGGTTGGGAACGAGTGCAGATCCTGTCGAGGCTGCAGGTTGAGTCTCGTTCCCACCTCTTTATGAATGCAGGTTTTATTGCACAGATGCAATAATTAATCCAAATAGCTAGCAGATGTGGCTATCCGTCTTTGGGCATGCTAGCCTCC-AATAGTCTCCCAATCAGCAAATTCTCAAGTCAGGCCAAAGAAAATTAAAGAAAATAAATTCTGTTGAGATATTTATGGAGGCCACCTGGATAGACATTTGACAGCTAAGGAATTGCCTGGATGCCAGGCAGCAGAGGAAAGGTCAGAGCCCCTGCAGCAATAGGGTTTGCAAAGCCCAAGAATAGGAAAATGAAGAAGTAGTCAGCCACATTGCATCTCAAGAAGAATAAAGATAGAA------TTTTCCAAGAAAAACATCACTGGCCTTTTCCCATATTCTCTAGAGAAACTTGCTTTTGTCTTTTGACAAGGGTGCTACCATGTTTCTTAATTGCACTCTCCACTCTTGGCTCAATCAATCAGTCAATCAGCCAGTCATTTATAGGACTTCATTTAGAGTCATTTCCTCTTCATTTCTACTCCTACTTTTTGAGTTCGTGCTCTTAAATCAT------------CTACCCCTAGTGTAGACAGTCCTTATTCTCCTTTCTTCAATTTTCTCCTCTCTGGCCAAAGAAATCATTCAATATTACAATTTTGGTCTTACTGTTTACCTAGTTAAAAAATTTGGCTCTAACCTATTGCCCACTGAATAAGGTCCAAG------TTCTTTGTATCTTAATAAGTCTCTAAGTTTAATTCAATTTGTCTTCCTAGTTTCTTTGCATATTACCATTATTACAGCTTTGTGAATTCTCTGTTACAGACAAATGAATCATTATCCTTCAAAATAATACCCGGTGCTTCTTTGTTGCCTATATACTGCTGAAGTAATTAG------CAACTTTTCTACCA-----------------------CATGCTCTAAGAAACAACTTATGACCTACTTCTATTTATTTGGTTATTCAAAAA-AATATTTATTAAACATTTATTTCTACAGATAACTAAAA
s HiC_scaffold_1 109614372 2717 - 233722169 gaGACTAAAAGACTCCAATTCAAGTACTAGATTCACT-AACTGGTATTGTGTCTCCAGCGCTTGGTCTTA-ACTGTCTCCTCTTACATGTTCAGTACCTTTATTCATGTTGCT-GCCCTCAGGAACACAGACCAGTCCACTGTCCCCactgaaaggaaatgaaaagtcgGCTGATGCTAACCAGACGTCTTTCAGCAACTACAACCATCTAAGCACAGTGTCCTGCAGAGTGattaatgattttcttttcctttatatttaacAGCAATGTGTttcagaaagaaagggagaaaagtatGATGAAGGAGGATGAGGAAGACAGTGGTCAGAGACAGagatataaaagttaaaattaatgaactataggaaagaaaagggaa-gaagcaaTTT-CTCAATATAAAATAGAGAACTGGCCAGAACCACATTTTTCGCTTCACCTAAGATTCTACCTCTCTCATAAG---GGAATGA------TGTAATTTAATTCTATCTTTTCTAAATCTACTGAATTA-------AAAAACACTTGTTAAAAG--------------------------------------CGGTGT----------ACTTCTGATCTCAAAA-GAAATGAACTTTCACAATAACTGTTTTCAGTTGTATATCAATGATTGTAATTTAGGAATTCAAACATGTTAGAAGAGTCAAAGAACTGAAAGGCATAATGTGTGGTGCACtgatactttttcttcctttcttcttct---aggatttatatttcatattaataa---tttttatataagggATATGAAGTTGCAACATCTGTCATCTCATTTATTAACATAGTTGATTTTCCAGATCTCACTGCCTAAGCCAGtgtctacttttttctttgtttccccaTGTATGTT--AAATAGCTCTGTAATATAGAAAATACTTAGCCAGATGCTTATCCATTATGAAGGGGTGATGCTTT-TTCATCAATATCAGCCTAGTTTAAAAGTGCAAAGGCTATTTC-CCTCCTTCATTTTCAGGGCTGACTCTGGACTTGCGTGCACTGGATTTTCAATGGATTTGGATTAGGCTATAGATTTTGTAAAAATATGGACCCTATTTACTGAGGTCTGAAGGCTGTATCAGGGATGACTCCTGGCAAACATTT-ATAGAGCAACTTGATGGAGAGAATGGGGAAATATATTTAGAGATATTCTGTG-AGttaaaatttcaaagaacaaGCAGCTAAGAATCAAAATGTGAGCACCAGAGAGCAAAGTAAATTTACTTGGCTGATGCAGAACATAATTGTAGGTCAAAGATTAATCATAAATAAGAACAACAATCTGAAAGATGTTGGTAGACAGCTTTAAGTACCAGCATaaagcatttgatt-----ttttaaaaaacagcagaatGCCACATAAATTTCTGGGAGCCTATCTGTAGATCAAGGAAGAGATACATGGTCCAGGTACTGGATACGG-ATTAGGTAAAAatgcttgaaaaata----tttttctactgtacAAAGTGCAGCCAACAAGAATAGGCAGCTGGCCACATGAACAATTCTGAATTCATAATACTCTATGTGCCATGTGATACGAAGAGGTCCAGACTAGACTATagattacaaagaaaattataagaaagGATGACTCTGAAAAGTGTCTGTGATAGAAAACTAAAGGACTCAGAAATGCATTAGTCCTGGAAGTAgtcctgaacaaagaaaatggaaCAGTT----CAAGGTGATGTGCCAAAAAGTAGGATG-GTGGATGCCACTGACAGGGAAGAAATGTTGAGAAGGCATGTAGGTCCTGTCTAGGATGTAGTATGAGCCTCCTTGCCACCTCTTTACTAATGCAGGTTTTATGACACAGGTGTAATAATTAATCCAAATGGCTAGCAGATGTGGCTATCCATCTTTGGGCATATTGGCCTCCAAACAGTCTTCCAATCAGCAAATTCTTCAATAAAGccacagaaaattaaagaaaataaattctgttgAGATATTTATGGAGGCCACCTGGATAGAAATTTGACGGCTAAGAACTTTTCTGGATGCCAGGCAACTAAGGAAAGGTCAGAGCCTCTGAAGCAATAAGGCTTGGGAAGCCAAGAAACAGA-----GATGGAGTTCTTA-CTCCATTGTATCTTAAAAAGATCAAAAGTGGAATTGTACTTTTCAGAGGAAAATATTGCTAGTTTCTTCATG---TCACTTGAGTAACTTGTTTTTGTCCCTTCACAAAAGTCTTACCATTTTCTGTCATT-----------------CTTCTTAAATAAGTTAATGTGAGCTTTGTTca------cttattta-------tctctcttcatTTCTACTACTATTTTTTGA-TTCATGCTCTTAAATCATGCTCTTAAATTCATGCTCCCAAT----ATAGTCTCGAGTCCCTCTGCCTCATCCTTTTCCTCTCTTGCTAAAGCAATCCTTTAA------AGTTTTAGTAATTTTGATCAATTAGTGAAAACTTCTAGCATTTCTACTTTGCCTACTAAGTAAAATCTGGGCAGTTTTCCTTGGTATTCGAGTCTTTACCTAAGTTAGAGTCAGTTCATCTT-GTAATCTCATCATATGCTATCAGTATCTTTCCTGTATTAGCT-TCTCTT-CAGACAAACTAATTA------TCCAAAATAATTCCTG--CCTCTTTTGATGCTTAAACACTGACTGAATGACTAGATAGCTCTCCTTTTTTCTCAACATCTGTTCAAAACCACAATGTCACACTTTCGGAACCAATTTATATCCGACTTCTCTTTATATGGTCATTCAcaaatattattaatttaaaactgTTTTCCACTGCAGACCATAA

a score=44446
s chr3            99715422 1445 + 160039680 TTCCATTAATCCTAGCATTCTTTA--AGATATTTGGAGGTGACATGTTAGTTATTACAAACCTTCTC--AATAG--ACCTTATAGTTTGCACCATTAGCAATTTCTCCACTTTCCATT-----AGAAATGTCTTAGGGAACTTCTTTGCTACCAGCTAGGAGCAGACACTCACATAGTACTTATTTGGTGACCTCTTTATATCTATCATAACAACCAATCACAATATTCCCCTCATAAA------------------------------------------------------------CTGAGATTAA------------------AGTCAGTATATTGTGTCACTGGAGGATTGCA-------------------------------TATGACCAAGAGAAACTGACCATAGCAGAAAGGGATGTGACT----AGCTA-ACTTCCTCAGTATACATGATCACACTGATGCTTATATGCTTGACTTCAGAAGAGCTGTatc---tttctacgtgtctatttcgtcatctgaagaatgggaattataacagcatctaacctgaagagtagttgAGTCCATTTGCATATGTGTATGGTGTCATTTGTCATATGCAAATGGACAATTAGCACAGGGTCTGGGGTAAAATAGAAGAAGTAAAATGACTCAGTCAA------------CTACTGTTTGTGCATAAGGTCTATACTTGGAGAAAGATTTAGGAGTGATGCTGGACCCTAGGAGCAAAGGTAAGGCTTCTAAAAACAGCTATTTCATACAGAGGGAAAACTTGGGCTTCTGGTGAAAAT-GTGGGCTTTCTCGCTATTTCTTCAGGATCTGTATTTCTACTCTGACCTTCTCCAAGAAAGCAAAAGGAAACAGGAGACTTTCCTAATTGTAGTCATTCAATTTACCAAAAGAATCCCAGACCAACTGAAACAAATTGAGGGCAGCCAACAGCAAGATTGCTAGCAAATTGCAATCACTACACCAGCCATATAAAATTCCCCCAAA-TTGTGGAAAAGTACAGACATAAGAGAATCTCTCATTTGACACTCCAGTCCTTGGCCTGGGACAGTAAGAAAAATGTTCCCAAGGACTGCAGAGATCTTTCCCATTGTTCAACTCAGCATTCCACACAGGACTTAATGACAGAAGGCGTTGCAGTTGTAATTATTCTCCTCTGGGTCCTACCCCAACCACCCTGCAACAGGCTCTCTGCAGCCCTGCCCAATCCCGGTAGAAGGGAAAAGGCACAAAGAGGGATGTTTGTGGCCAGACAGTCTCCAATTAGTCAAAATGAGAACAATGACTGGCTTTTCCTCTGGGCCAGCCTGGAAAA--ACATCCTGCATGTTTGGGT-GGGTGAGGAAAA-------------------GAATTGCAAATGGCATTCTTCCGGGGTGTATAATGTCTGTGACCCACGCCACCCCAGTGGTCAGAGCCTCAGGA--TTCAAAGACACCTTGGACAGGAGGCCTAGAAAAAGTCAGATGTGGTAGGCCAACCATTTCTTGCATCAGTTAGTGAGGCAAAAGCATCACCTCTGGGCTTAGGATGCGAAGGACTGTCTTGGAGTTGAGTCCCA
s HiC_scaffold_1 109623545 1525 - 233722169 tttctccaaGCCTACTATTCTATAGAAGACTTTGGGAAATGTTAGAGTAAATATTACAGACTTGCTCTAAATTGGTAATTTATAGACATCAGCATTg--aaagtcttcattttttttttagaaaaaaatgcccCCT---CCCTGTTTGCTGTCAGCTAGAATCACGTGGTCCTATATTATTTACTTCAGGGCCTCTTCATGGACATTATAGTAATCAAACTTAgtgttcttgttttaaaaattaaacagaatactTAGGATAGAGCTTGGTAGAGTACTTACATAGCAGGCATGTGGCCTTGGGCTTAATCCTtaacatggcaaataaataagttaattaattaacCAGAGACTTAAAACTTGACATGATGAGATGTAGAAAATGTTAATATGATGGGGGGGCACTGGCTATAATAAA---GGGTATGGCTCTGGGGCTAGACTTTCCTAGTAGAAGTCTCTATTATAATCCTTAT--GTTTGACCTTAACAAAGTTATTTCAGGTTTCTACGGctccatttgttcatttttaaagtagGAATTGTAACAGTATGTGGTTTACAGAATAATtgatgaaatt---aaatg-----------aaatattacacATAAA---ACAATTAGCAACAGGCCC-----ACAATGAAATAAGTA------CTCAGTAAATCTTTATTATGACAACTATTTATGCATGGGAtctgtatttaaagaaagattatgAAGCAATATTGTac-----------------------------------tatcaca-aaaaagaaaacaagggacacTAGTAGAAGTCTTGGGGTTTCTTGCTGTTTAGCGGAGACAGTGATTTACATGTTTTCCTTCtccaagaaagcaaaaagaaataagaaccaTTCCTAACTATAGTCACTCAGTTTACCCAAAGAATCCCAGAGCAGCTGAAATAAATTGAAG-CAGCCAACTGCTAG-TTGTAAGCAAATTACAATCACTACACAGACCAGAAGAAATTCCAAAAAAATTGTGGTAAAGTACAGACATAAAAGAATCTCT--TTTGACACTCAAGTCCTTGGCTTGGGACGGTAACAAAAATGTTCCCAAGGACTGCAGAGACCTTTTCCATTGTGCGACTCAGCATTCCACGCAGAACTTAATGACAGAAGGCGTTGCAGTTGTAATTATTCTTCTCTGGGTCCCACACCACACACCCT-CCTCAGGCTCTCTGCAGCCCGACCCAGTCCCTGTAGAAGGAAAAAGGCACAAAGGGGAATGTTTGTGGCCAGACTGTCTCCAATTAGTGAAAATGCAAACAATGATTGGCTTTTCCTCTGGACCAGcctggaaaaagaaatcctgCATTGTCGGGTAAGATGGGGAAAGAATTTTTGGTCAAAGTATTGAATTCCAAGCAGGACTCTTTAGGGATGTATAATAACTGTAACCCATTCCACCCAACCAGTCAAAGGCCCAGAAATTTAGAAGACAC------AAGGCAGTCTAAGAAAGGGTA-ATATGGCTGCTAACCCTCTGCTTCTCAAAACCTGTTGCACATGAGCATCACCTGTGTGCTTATTTTCCAAAGGCAAATTCCGCTGTTGAGTCCCA

a score=35359
s chr3            99717371 2016 + 160039680 ataCTCTCTTTTCTTTCCCTAAAATAATTCTTTTCCATGTGCTTGGCACACTAACATTTGAAAAGACAGGA-CTATCCTAGATAGCTGATGGAGATGGGTTTCTAAGCAACCAGAGGCCCAG-------------AAGTTGTCCTTTCCACTCCTGTTCAGTAAAATTAGGCTAAAATAATAACGATTAACAATACCAGGATGAAGTCAGGAATAATAAGCAGACATTTCTTCTATAATAATAATAATAATGAATAAAAGGTAAATGTTGGGCTTAAGTTGTAGATCCTACACTCAAGGAGCAAGGGAGCATAATTTCTTAA-CCTGTTTTTCCTAATACTTGTGCAAAAA------------ACAAGGTTTC-ATGTTGAGTA-ACAGGATGCTTTATGTAGGTTTGCTTGCAAACTCTA-----GTTAGCACACA-CTAGTGCTCTGGCTCCTAAAATCTTAATG-------------------------------AGAGGGAT--------CAGATCA-------------CTCTTATTGGTA-------------------------GGGTCTTTAACTAT---------TGCACAGTCCATCAATCCATTTTAAAAGAGA---------------------------------------AGAGGCAGGAATTTCAGAGCCACAG-----------------TTAGACAAGTTTCTAAACCCCACTGtacatat-----------atatccatatatatatatatgta-tgtatatgtgcgtgtatatatatatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagagagagagagagaTATCTCACATATATGGGATGTATGTAAATACGTTTACAGACTTTGTGGCTGATTTGCTGTTTGTAGAAACCTATAGTTGAAAACTTTAGATGTTTCAGTAACCTCAACTTTCTTATATTTTTTCCAGGAGACCTTAGGTTTCAGTGAATACAACCCAGTTTGGTAGGGAAAGGCTGTGACAAAC-AAGCCCTTTGATCTGTAAGTTCATCCCC-AACCAGCTGTGTGACATTTTAGACAAATCTGT--GCCTTTTCCA-GTGTAGGCTGCTAAACTGCTATGGGGCAATGAAGCAATCCTGCCCTTGGGTATGGCT-------------TACCAGTTACCAGGAAAGCACCACAGTGCCCAGATCTA-----GGACTTGGAGGTCACAGCAGTGCCTTCCCTCTACTGTGGTTTTCACAAAGACCCAGGCATCCTTCA-ATGCAGCTTATGTaaaaacagaaaagaaaaaaaaatgggaaaaaaaaaagcaaggggcaataggagaaatacaggaaaagaaattgagaaagaa-gaGTCCCCAAGACACCCCAGCCAAATACATTTAATAATTTTCACATCTGGTACGGAAATGGCCAGGAAGGAACCCCTACATAGGTGGTGGATCCTGCGGGAGTTTCAAGCTGATGAAGCTATCATTCACATGCCAGAGCATTCGCCCTCCTCTTGTGGCTACCACTCTCACAAGCTGTTCCTTGAATCAGCAAAGGGTCCCTTTTCCACAAATGTACCTTTAAATTCCTAGATGATCAGCCAACCTCAGTGTCTCAGCTTCCAGAAGAGCAGGGTGCTTAAGTCAAAAGGCTGTTCAGGGACAGCCACAACTTAGAAGCA-AAAGTCAGAGGAAATGGATACTTAACCGCCCCCCTCCCCTGTACCCAGTACATCACCCCTTCCTCCTGGC----CGGAGACTCCCAAGGAGAGTGAGGT--GCGGCCAAGTAGTTTCCAACCTGAGTACTGGG---ACTCCTGATGGCTGCA----TAGACATACTAAAGAAGCTGGTAGTGCTT--GGAAGGAAGTCCAC------------------CAATTATCCTTACTAGCTAATTAGCCTTCACCTCTCTTACCCCAGCTTCTGGTCCTATCAAGTCAAATGGATGCT-ATATCTCCCATTCTAATGGCCCAGAATAGGTGATAAAATCCAAGTTAAAACTCACCATGAATGAATATTTTGGCTGTAGACTCACAATCTATACAAAGAAGCAA-------------------------------------------------GATGACTCAGAATGCAGCT------------------------------GCTATT----GGTCATTAGGAATAGCAGCCCAAGTGATTGGTTGGTTTTTGGTATCA---------ATTCTCACCTATGCATTTCCTGGCAAGAATGCATAGAGATAATAAACAATTTATTATGAAATAT
s HiC_scaffold_1 109625116 2122 - 233722169 ataacctctcctccttc---agaATAATTATCCTCCCAGTGATCTACATTCTAAAATT--AAGAGACAAAAACTTTCCCGAATGGCTGTTGAAGA---ACTGCTAATCAGGCTGATTCCCAATTCCAAGTGAAACAGATTTTCCATCTCATTTTTGGTTAATAAAACGTTGCTGAGACACTAATGATTAATGACATCAGAATAA-----GGAATGATGAGCAGAT-----------------------------TACAAGTCAAATATAAGATTCCAATTCTAGCTCCCACAGCTAAGGACTGGAAAAATCTGATATAGGACTCCTGTTTCTCCTAAAACCTGTGTAGGAAGGATGAGGGGACACAAGTTCTCTGTTTTGAGTACATAGGACAATGCATGTAAATGTGCTTACAACTTgtaaaatggtcaataaatatctGGTTCTCT-----TTAAAAACCAAAtgcatctttttgtttgtttgcttatttgttgagacagggtttcactatgcagttcaggctggccttgaactcacagtgatactcctgcgtcagcctccgaagagctgagattacaagcatatgccaccatacccagccca--aATGCATGTTAACAGTGAGATTCTGAAAATTCTGAGTTAAGCAATAGAAACAGTAACAAAGATAGAGATTTTAAGATTACAGACTAGTAACTAAGGGGCTCTGTAGAGTCACCAAATCCCAGTATCTATATTAGGGGAATAAATTTCTA-ACATACACATATGTACTGCATATACAccaatatatgtatacacatgtatatatttgtacctgtatatgcaAATCCTGA-------------------------------------------------------------ATGTACCTATATGTACAGTATACATGACTAATTCTCCACTAA------------------------------------AACCACAACTTCTTCatat-------------------------------------------gagaagaaaatcttgcgaCAGCTTGAGCACTTTGCTTTATAAACCCATCCTTTGACAATCTCTGGAAAGTTTTTATGTGAACTGTAAGTCTTCTCTAAGTGTGGACT--TGAAAGTCCTTGGGG-AAGGGAACATCCTTATGTTTGGATTTAACTGATCATAGAATGCTAGCAGCTCCTAGGAAAGCATCTCAATGCACAGTACTATACTGGAACTGCAAGTTGCCAGGAGT----TCTCTTTGCCTTGATTATCCTCTAAATCTGGGCATCATTTATCTAGAGTGTATgtgaaagcagaaat-----aaaaatggaaattaaaaacgggaagag-----agggaaata-aggtaaacaaactgagaaaaaaagagtCCCCAAGAAACTCCAGCCAAATACACTTAATAATTTTCACATCTGTTGGGGAAAGAGCCAGGAAAGAACCCCTATGTAGGTGGTGGATCCTGTGGGAATGTCAAGTTGATGAAGCTATCATTCATAAGCTCCAGCTTTGACCCCCTACCTGT--CTGCCACTCTCA-AAGCTGTTCCTTAGATCAGCAAAGGGTCTCTTCTCTGCAAATGTACCTTTAACTATCTAGATCTTTGAGTGTCC-CAATGCCTCAGCCTTCACAATAGCAAAGGGCTTAAGTCAAAAGGCTGCTCAGGGACAGACACAACTAATAGGCAGAAAGTCAGAGGAAATGGATACTTAA-------CCTCCACTGTACCCAGTATATCACAGCTCCCTTACAGCACAGAGGAGGCT-CCAGAGAGAAAGAAGCAGGAGGAGAGCTTGCTTCCAAGCTGAAAAATCCGAACACTATTTATACTTCCATTCTTAGGCACACGGAGGAATCCTGATGTGGTGTAAAAAGGAAGTCTAAAGCAATTTTCAACTTTTGTAGTTGTGTCCATGAGGCAGTTTACTTTAACCTCTC--AACACAGTTTCTTGATTTATCAAGTAAAATGGACACTAATTACCCTCATTAAGATAGCATAGCTTGGTTGAAAAAGT------------TCattatgaaataatacatggcCAGCA-ACTCATGATATGTACAAGTAACCTAAGgcccagaacaaaataaaattttagtaacaCCATTTAAAAGTATAACTGACAAATCAATATGCTGCTCATCTCTATCAGCATACATTGTCAACATCAGCTATTGCTGGGGCCCTTCAAACAGCAACATAACTGATTCCTTGGCTTTTATTATCAGCCTTCACTAATTCCACTAATGCATTTCCTGTAAAGAATGTGTAGGAGTAATGAACAATTTATTGTGAAGTAT

a score=21680
s chr3            99727003 1185 + 160039680 TCTTATTTGCTACAATATCACTATTCAGATCTCTTCTGCTATCTGCACTACAAAGATTTATTAAACTTATTAGTATTGAACACTATAATAA-AAATGTATAAAATCAAATTCCGTATATGCATAGTGATGATAAGTTTACTGTCAAGGTTTATTTTTAAAAAGTCAATAATTC-GTAAGTTCACTTTTTGGTTTTGATCTGTGGATTTAGGAAATCTACATTAAAAATACCCCAAGATATAA--------AGTAGATA---------------------------TTCTCTGTGATCAACATGGTAACCTTAAAGAAATTGTTGCTGTATTATTTGTCCTCTGAAATGT----ATTGTCTGTATTTGACAATTACTGCAAACATTTTCTGATGCTCTTT----TCTGTGACAAAGTAATTTTCAATCAGAGGTCATAAAATACAAGCAATGATGGTCAGAAATCAGGGGCAATAGCACTCCAATATCTCACACACCTCAATATTTCCTTTCAACCTGATTCAATATCAGTCATACAGTTGTATATTCATTTTTTTGACACAATGTC--------ACAGCCAAATCCAAATAGTTACGTCAACTGTGAAAATAACTGTTATGCTCTCGTGTTATT--TGGAAACAACTTACAAAAC--TGAGT------------ACTGCTTCCTCTGCTCCTTTCTCCTTGTTTACAGCCAGTGGAGTAAGTTCTGTAGTTATTCTGAAATGGTGTCGCACATGCTCTCTTCACTGCAGCATCAGTGACCATCTGAAAATGGTCCTGACCATCAGGA-CATCAGAATAGATAAAGATGGCATTCTCTGCTCTGTCTTCATCCAA-TCCTGGCTTTATTCATGTCATTTTACTTTCTGTTTATATTTATAATTCTGTCG-GTGTTAACAATTGCTAACAGTTCCTTCC-CTTCCTTGTTAATGTTTCTAGAATGTGATTCCTTGC---CTTCCATACCAATATCACCTGAATCTTGCACTGTTTCTAGCACCCACACTTTGGATGGTCCCGCTTTATCTTCTCCATAA--CTCGGGAACTGTATAAAATGTTGAGAGCATCACAGACTT-CAAGTAGACCTGGATGCTATATATTAAGTGACATCTCATTTTACTTTACATGTTTTTCTTTATTGAGTCACACTGAGTTG--ATTCTTTC-TGCTCATGAAAG-TGTTCCAGTTCAA--TTTTTCACAAAAGCCAAACTCA----CAAATAGTTGCTGGTGTTAGTAAAAATATT
s HiC_scaffold_1 109644833 1170 - 233722169 TCCCATTTGTTGCCTTGTGACTACCAAACTTTCCACTGCAATTAGCATTATA------------------------TAAATGGTGTaatggtaaattttaaaaatctaac--------------------atcAGTCTACTGT---AGCTAACTT---AAAGATCAGTATTTTTGTATGCTTACTCTTTGCTGTATATCTATGGATTT------------TTGGAAATATATCAAGAAAAAGGAGTAACTAGTAGGTGAAAGTCTAGTAGAAGTCACCTGGCTATTTCTCTGCAATTAAACTGACCAGTTTACAAGaattattg----attattttattacCAATAAATGACAAGTATACTTATTTAATGCTTGCAGCAAGTACATT-TGATTCTTCTTACTCTCTATAACAAAATCATTTTCAGTCAATAATAGTGAA-------TAATggtaaaaaaaaagcaggatatataatGTTTGAAAGTCTTGC---------CATTTCATTTCAAACAAGTTTAAAGGCAATTATAAAATCAGATGTTTATTTTGTGGTCTCGATATCCACAGActatagtcaaaataaaataattgtttc---tttcaaaata---------ctAACATTTTATTGCTTGTAAGGATTTATAAAATCATGAGTTCTCAAGTATGaattgtttcctttgctctttatttcttttctttgaatagcAAAGAAAGCtccatattttttctgaaaatgtt---caATCACTCTCTTAACTGGATTAACTCTTGCCATCTGGAAATAGTATTGACCAACAGCAGtatcaaaatagattaaaatatcaCTTGATGTCTCTTCTTCATCAAAGTCCTAGCTTTACTTGTGCCATTTCTTCACC-----ATATTTTCAGTTCAGTTAAGTGTTGATACTTGCtaacatttcctttctctttcctgtcaATGCTTATAGGGGATGATTCATTGTTGTCTTTCATCCCAGCTTCATCTGAACCTTGTATTGTTTCTAATATCCATGCTTTGGATATGCCAACTTGTACTTCTCCACAATTTTCGTAAATGTTATGCAATGTTGAAGgcattacatatttaaaaatggatCCAGACGTTATGGCTTCAATTGCTTcttgcattttgaaaaaaatctttctttgttGAATTCCACTGGATTGTCACCCTTTCATGTTCATAAGAGATTTTTCACTCCAAATTTCTTTACAAAATTCAGAATAATTATTAAACAATTTCTGGTGTTAG-AATAATATT

a score=63795
s chr3            99737449 2688 + 160039680 TATGTATTTCTATGACTTTATTCATGCTC----TACATCTCTTGATTTCCCTTTCCTCT-TTCATTCAGAAATTCTACTATAAGGAAGCCTTGAATCAACAGAGCTTCCACTTGTCCATTGACACCATAAGTGTCAGAAATGAACTGCCCGAGAGTTCCACAGTGCTAGATGTCATTC-CAGA-----------CATCCTTTCTAGTTTATGAGAAGA---------------TATATTTTGTCTACGGTGTCAAATATTTTCCTCATAGATTTCTACATGGCCAAGCAGCTACTCTAATCAGAATTAGTTGTCAAAGTCTCATAATTAAAAAAAAATTGAGGTGGTGGGAGGGAGGTGGCAAAAGGGTTCTATTCACTTACCAATGAAATATATGTTTTCTGGAGATATTTCTATAATAAAAGGTATGTCTTAGCCAGGGATTCTAAT--GCATCAAATCTTGCTCTGTCTTCT---TCTATGCATGTATGAATTTAGTGCAACAAGTCTGGGCTGACAAAGAGCTG--------------ATCTTTCCCAGAAA-----------GGTGGGAA-----CATTTCAAAATGTACCTCTTCTGACTGTGCACTCTTTCACCCTT-GCTTGAGGGATTGTTAAGAAAGCCTTATAGCCTTGAATCAG---GTATCATCTGCACTTTCATTCTGGAGAGCTTTAGATGT------GTTCTATAAAGTTAACTCTTGCTTTCCAATCACATTGGGATTTGAAACATTGTACTATGGGTCCAACTTG-ACATTCCCATTGAAGATTAATTTGGCTGCTTTGAAACATCTGTGTTCTGCTGACTCCTGTCTGTTCCCCAGGCAGCAAGGCCAAACTCATCCATCATCAAAGACAGGCACTTGGAAGCCACCTCATACTGCTGCTTTTGCATGTCAGAGTAC--GCTCAAACAGGGGAACACCAGAAA-GACCTGTCCCTGGGGTTCCTCCTTGGGAGTTCCTGATAGGCCTTCCCACTCATATTTTGGGTCCAAATCTTGTGAAGGCACCAACATAACTAAGTCCTTGAAAGCACAGCAGATGGAGCAATGCTGAAAGGTAGCTGTACAGAGGCATTACAGCCACCCGGAATCTGGAGACATTTCTGCCATAGCTGGGAACCCAAAATAGCAGTTGATGAAACCAAACCTGATCCCTGTTGTCAAAAACAAGTGTGAGTATTTTAGTTAATGTTTGGCAGCCAGCCTGTCTGTAAATGTAGGTTCACTCCATGGCTCAGCAAAGGGTTTC--AAGAGCTTAGCCATGACTTGGTCTTCTGTCCTAAAGCTCTCCTTGCTTGTTGACAGAGTGCTGCAAGTGGACAGTCAGC--TTTGAAGTACGCAGCTAAAGGTATCTCTCAAAGAGTCAAGAGAAATCCAAG------AGCTGTCTTCAGAGCCACAGCTATACATATTTGGTGCAAAAACTCTAAGAGG--TCTCTGTGTGGGCACAAGTACCTCTCCTATGAGCAGCCAGCTTGTGAAA-CCAGATTCTCAGAGGCAGAACACCCTGCTATACTTTCAA--ATACATGTTAGAGACAAGCCCCTGCCATAGGTCTAAGAACCTGTAAAACACAGTCAAATGCTACCCAAATGAAAAAATACAAAAATATAATAAACAATTTAGATAGGCAAGGAGTTTCCTTACACAACTGGGATATATTCAAGAC--TGGCTAATATACCCTAGGATAAAAATGTTTTATAGAGAAGTTGAACTCTGTAAAATCATCTAAAAAATATTATGTTAGAGGGCTCTTTCAACTTTCAGGTTTCTTAGTAT----ATTGTCTGGTTAATAACACCTACTAGGTACATATACAAATATGCA-------------------TATCAAGCCAGTCAAGGCTCCAGTCCAACACATGTT--CCTGCTCTTATGCTGCTGTTACATAACACATATAAAGAAGCACAGAGGCCATTCATGCGATGTTGCATATATTAACTTCCTTATGTGCAAAGGTACACATGCAGGAAAGATAGAAAGATAGTATAGCCAAAAAGCTCAAGAGCCTTCATGTTGCAGTGTAAGTGCTTTGATAACTCCTAAGTTAAGAAAAAATAAAAAACCACTTTGTATAACCATAGTGCTTTAATCTTTTGTTGGACCCAA-TAAGTG-AGAGGACTCCATAAATGAAGCTGTCCTTTAACCAAAAATGTAAGAGAAAACCTAGACCGCTCTAAAAGATTTGTGAAATACCGTGCATGGACTAGCATGGTTTGTTTTTCAGAAACATATCTACACTTGTACAAACACAGAAGCAAAACTGATGCAGGGGGTGGGGGTGGGGGGGCACAGGTAGGAGCAGGAAATTCTCCTTGATTTCGATTGTCATTAATGGAGAAAGGTAGGGAGCTGCCCTGTTGCAGTCCAGCCTTCTAATGTATCTACTTCTGTGAGGTATCGAGTGATTTAGTGCCCGCC-CCACTCACAGTATTTACTGCCTCTTGCTCTCTTTACATGCGCCCAGGGACCTTCACACTGGCATGGATTGATGAGGCTGCGTTCACTCCTTTCCTTCATCAGACCGGGAAGAAAGGAGTTATGGACCAAGAAGGAGCATTTA-----GCAAATAGATAAACACGTTGGACAAAAGTGTAGTATTTGTAGTTTGACCTAGCTAGGGAAGTTAAGAAAAGCTCCAGGATATAACTCTTACCCCAGAGGACTTTGGGGAAAAATAAATAAGACAGAGCTAATGGGACACATGCTTAGCTTACTGCTCTCTGCCTCCAAATGTTATTAGAAA
s HiC_scaffold_1 109652756 2609 - 233722169 TATACATTGTTCTGATCCAATTTGTGGTCATAATATTGTTctgaattccatttttttttctttactcaatAATATTACTAGAAAGAGAACTTGAGTAATGAGACTCTCTACTTCTCCGT-GGTACTCTCAGAATGAGAAATACACTCCCTGAAAATGTCTTAATTATAGAAATAATCCATAGATAAAGACACCACATTCTTTCttatttaagagaataaaagcTACCCAAGATCATTTTTTTCTGACAGCAGCAAA-ATTTTCCACACA--TTTCTATACAACCTAGTAGCTACTTTGATCCAGGTCAGTTATGCTATGGTCattcctaaaggaaaaaaaaa-------------------aaaaagattcactttGCTGACCAATAAAATACATGCTTCTCTGAAATAGTTCTGCAGTAGAGAGTGCTTCTCATCCAAAGACTCTAACAAGATTATATTCTTGCTTTGTCTTTTACACCTCTGTATGTA---ACATACT-CAACCAGACAGAGCT--CAAATGTCTGCCACCCTGAGGTTTaactttcctaaaaaaaaaaaagagtggcagAAAGTATTCATTTGAAACCATCCCTCTCTTGGctgtgaaatattttccttatagTTAAAAGGTTTTTTAAGAAAACTTCACACATGTGAAGCATTGTGTTTCATTTGTAGCAATAG-CTAGAATATTTTAAGTCTTCTTCCATTTCATAAGATGACCtcttgttttcaa----------ggttt-agATATTCTATGA-GAGTTCAACTTGCATATTCTCCTTAAAGATTAATTTGATTTCCTTATAATATCTGTGTTCTGTTGACTCCTATTAGTTCCCCAAGCTACAGAGCCAAACTCGTCCATCACTATAGATAAGCACTTGGAAACCACATTTTGCTATTGCCTGCACATATCAAAGCGTCAGCTTAGGGAGGGAGACTCTTGAAGTGGCCTGTCCA-AAAGCTGCTTCTCCAAAATTCCTTTTAGACCTCCCCACTCTCCTTTTTGGGCTGCATCTTGTGAAGGCAACGACACAGCTGAGTCCTTGAAAGCACGGCAAATGGAACA-TGCTGAAAGGTGGCTTTACAGAAGCATGATGGCCACCTGGAAtctgcagacatttctgtcatagTTCCCTACCCGAAATAGCAATTGTTGAAATTTAATATGAGCTCTGTTGTCAAAAACAAGTGTGAGTATTTTAGTTAATGTTTGGCAGCCAGCCTGTCTGTAAGTGTGGGTTTACCTCAAGGTCCAGCAAACGGTTTCAAAAGAGCCTGGCTATATTCTGAGCTTCTATGCCAAAGCT-TCTTTGTTTGTCAACCTTGTATTACAGATGGCCAGGGAACTATTTGAAGTGTGCAATAAGAG---TCTCTCAAGAAGCTGATATACATTCACATGCACTAACATTTTTCAGAGCCACAGCTCCAAACAAGGGGAGTACACACCTGAAAAGAACTTTCGACATGGAAAAGAGTGGCTGTCCCATCAA-ATTCTGCTTGTGGAACCCAGATTCT-GGAGGCAGA--ATCCTGACCTATTCTCAACTATGTCTATTTCAGATAGGTCCT--------------GTGTCTGTGAAATA------------Attgaatttaagaaat-taaagacGCATCAGACATTTTGAAGAGGTAAGGAGTTTTCTGA---AACTGAGGTA---TCAAAGCCTTGGCTGAT----CCTGGAATGAGAAAGTGGTATTGAGGTttcaaacacaaaagaataatttaata-----tattGTAGAGGACTCTT--AACTCTTACACTCCTCAGTATATGCATCCTCTgatccatagtacagaagcagtGGATATACATAGATACACAATGCATATAGCTCTGTGCATCATGTCATTTATAGGTGCA---TATCACATGCTTGCTCACTCTCATGCCTCTGTTAAAGAGCACatatgaaaaagaacagaaaccaTCTATGAACTTTTGGATAAATTAACTTGTTTCTTAACTGAGGTACATAAGCAGAATAGCTAAGATG--AGTAACAGCAGGAAGCG-------TTTTGTGTTGTAGTTTAATTGATTTG-TAACTCTTAAA-AAGGCAAAGGTA---------TTTTTACAacctttcttcttc-atcttttgttTCACTGAACTAAATGAAGAGGGTCACATAAAAAAA----TTTCttggagaaaaa--taaggaaaaggctAGAAAGCCC------ACTTGGTAAGTGAAGGGCA--GATCA-Catgctttatttttcagaaatat-caTGTACCTATGAAAGCACAG-----GAATTAGGACAGGTGGTAGGAGCAGGTGAACAC-----------GTGAGCCTTCTCTGCTTACAGCTGTCACTAACACAGGACAATAGGATGCAA-------GTAGGCAGGCCCTTC-------------------------------CTTAGTCCATTCCTTCAGTCACTTTATCATCTGCTTCTTATTCTCTTTACATGAATCCAGATATCTCCACTCTGGCACAGATCAGTGAAGGAACATTCACTCTTTTCCTGTATCAGACagggaagagaaaa--taagaa--aagaatgacCAAACATAAATGCAAACATATTTACACTGTAGACAGAGTTGAAGT---------------TAGTTAAGAAAGCCATGAACAGCATCAGGATGGCCCTATTA-CCCAAAGAACACTAGGGAAAACTAAGTAAGGCAAAATTAATGGGACAGATATTTAGCAAATGGCACTATCCATCCAAATATTACTAGAAA

a score=26406
s chr3            99740864 620 + 160039680 TAACAACAAATGTCCAGATTCTAGAATTGAAGTGAATTGAAAGCCAAAAATGGCTTCTGTGGAAGAATGTATCCAGAGCTGCAGAGTAGGTAGGCAGCAGCAGAG--------------TCAGAAAG-------ATACAGGAGAGGATTCGATTTTGCAAGAGTGTGATACTTAAACAATGTGGTCACTCTCCTGGCCTGAGATACTTTGTTCCAAAGCTTAAGGGGCTGTTTTCCACATGATTTAAAGGAATTTATGATTTGTAAGTATCCAAAAAGTTGCC----------------GAGAGAAAACTGG-TTACTCAAAAGCaaacatgacttcctgtttttatgaaat-aggcttaaaa-acatgtttaaaagactcactgaattttttggctctgatatagcttcaaaaaataaaaaagacagacaatctaatttgatgatataattgtaattgaataagaaccatatggattacattttccccctagttaaactacacatgaattaaaaatcgagTCCTCATTCCCCTCAAAGTAATTAATAAGACAATTGCTTGAATATGATACTGGCCTTAATTATCATGCTGAGCTCATCCTGGCTTCCCTGTGCAGATCACTGTAGGGAATGAGTAC----AGCCCAGGAAGCCAGACTCTAGC
s HiC_scaffold_1 109658975 648 - 233722169 TATCATGAAAAATTTGAGTCTCAGAATTCAAATAACTAGTAAACTAAAAATGACTGCCTGAAAGGGATTTGGCCAATTCTAT---GTAAGTAGGCAGCAGCAAAGGAGTTACAACTGTTTTAGAACATATCATTATTCACAAGAGGATGCTAC----AAACAGCATTATATTTAAGCATGGTGGCCACTTTCCTGGTCTCAGACAGTTTGCTCAAAAGTATAAGGAGCAAATGTCCAGATAATTGAAACAAAGTCATGATTTGTAGTTATCCAAAATTTAGCCACtcctaaaactttttaaaaaagaattggttTGCTCAAAGTCAAATATCACTTCCTGTTCTTATGAAATAAGGCTTAAAATGCTTGTTTAAAAGGCTCATTGAATTTTTTGGCCACGATATAGCTTT-----TTAAGAAAACCAGACAGTCTAATTTGATGATATAAGTGTAATTGAATAAGAACCACATGGATTCCA-TTCCCCCTTA--TAAACTACACATGAATTAGAAATGAAGTCttcattctccttaaaataataaatgaaacaattgaTTAAATATGATACTGGCCTTAATAACCATGCTGAGCTTAATCtggctccattttacagataactGTGGAGAATGAGTACTTTAAGTTTA-GAAACCAAGTCCTAGC

a score=104527
s chr3            99749405 4265 + 160039680 [encoded data, 4579 characters]
s HiC_scaffold_1 109662606 4267 - 233722169 [encoded data, 4579 characters]

a score=33746
s chr3            99755552 1669 + 160039680 ATAAGTACATATTT----GTTTTTAAAAAAAGATTATTGTTGGAAATCATTAATGCTATTGATTTTTTTTTGTAGTGCT-TTCTTTCAAACATTAAGCAATGTGTTCTGGGGAAGTTGCCTGCAGAGGTGTAGGACTAGCTTGTGGTTTAGTGGGAAGGGAGGGGCAGACACAGTCACAGAGTTACCAGAGACAGCACCTGGGGCAGAAGAGA-ATTCTCTGCCCACACACTGAGTGTCTGGCTTCCAGATGGATCTTGGGCACAC-----ACTCATTTTTATAATTTCTCCACCCTCATCATCTATTCATTTGTCTCCCTCCCTTCAGAGGAAT-TTAAAGATGGGCTTTGTTCTGCATTGCCTCATTTCTCCTTCTT----------TTAGCTTTC-------AGTGACCAGCATTGGCGGATCATCCTTTTGCTTGGAATAAAGGAGAAAATGAAATCTAGCTGGTCTACTCAGCACCATTCAGTCTGGACACCTGGTAGTGTCTGTAGGTCTGGGGCAGAGTCTAGCTTGGCCAGTTAAAATAATAG-------------ACACTCAAACCAATAAAGATTTCTGTGTGTTGAACTTCAGTTATCTTCCCAGTGATCTACACATCAAATAAGCTCACTTTGAAGCA--TATCACAGAACAGGTAAGTTCCATTATGACAGACCAGGAAAACCTTGATTAAAAACCT-CTGTCTGACTTAAGGATCGTGTCTCTACATACTTTTGGGGGCTT---TGTAAATACTTTGAAAGTATTTTAAAGGGATTTCAATGTTTCTCTCCAATGAAAACCTATCAACATATTCAGAAAGCAGCA-----CCCATCTATTCGTGAACCCCAGGTCAGAGTCCATGA-GGCTAGGAACAGGTCTGTCTTCTGTTATCATTTCTATCATTGAGATAAGATACCTGTGCTAGATGGAGGGAGATGCCTAAGTGGACACCAGTACATCTTTGGGTACATTCCACATTTCACTTTCCCTGTCCATCAAAAGCAAAACAGAGATGGCCAGTTGCCTCTATGAGTGCATGCTGTAGGAATGTGTGAAAGGTGACT-GAAAGGACAAGGAAGAGCTGCTGC--------TTTCTGGGAGCTGAGTGCTGGTCCTTGCACACACTGTATGTATTTCAGGCAAAAACTCCAGAACTTAAATTGTATCTAAGAGAGTATGAAGTGGAAGGTGAATTGTTGGTT---CTTGTGTATAAGCTGATGGAAGAAGGGACCCTATCCCTGAATTCCCTTTGCCCTCAGTACTATGGCAGAC------TGTCATAAACACCCAGTGTTCTTCCcatgaaagaataacatatacttgccc---cattgtcaagattagctacctcccttgctttgaccaagacattatccgtgttacttagaactaacatcttaagatcattgacattgggtttgtttcactctgcaataatattagaaataactttggaaatgaatgcttctttagcccaggtcttggaaagctgaagacatggtacagagctatagctgctgacctatggagctaatagtttgagcaagtaatacattcttactataagtcaatgagatttggtgtttccttgatatgaaaatacaaatcatatatatcctttgatgcaATGATTC---TAGATCATAGTCTAAATTTATG----------------------AATATACATACTTTCA-----------AGAAAATCCAAACCCTTCATACATATTGAAATCCCAACCCAA
s HiC_scaffold_1 109668107 1677 - 233722169 ATGATCACATATTCTATAATCTTGTAAGTAAGGCTATAATAGGAGAAAAATAATGATCTTGCTTGCTTTTCACAGAGCTATTTTTTCTGACATTAAGCAGTG-GCCCTAGGGGTGTCAC----AGAGGAGTGAG-CTGGCTTGTGGTTTGGCGAGA-GGGAGGGGCAGACTGAGCCACACAGTCACCAGAGACGGCACCTGGAACGGAAGAGAGATTTTTTGCCCACACACTGAGTATCTGGCTTCCAGATGGATCTTGGCAATGTGGTGGATTCTCTTGTAT-TTTTGTCCCTCCTCCTTATCTTTT--------------CTTTCAGAGAAATCTTTAGGACAGATTTTGTGCTATCTtgtctccctt-tccttcttcaaCTCTACCCTCTCTTTCTCATCAAAGGGAGCTTCACTGACACACCTTTCTCATGCTTgaatttaaaggggaaaataagtGCAACT----CACTCAGTCACCTTCAGCCTAGACACCTGGCAGTGTCTGAAGCTTTGGGATAGAGACTGATCTGCTCAGTTAGAAGAGCAGTAATCTAACGCATCTACCCAAACCAACTAGAAGTTC--TGTGTTGAAGTTTGGCTATGTGTCCACAGACC-------------------CTTCTTAGCAAGTATTATGAAACTGACCAGTTCTATTATGACAG-------AAATGTTTGCTAACATCTTGCCCTCTGACTTAGGGAGCATGTCTT--CATGCATTTTGTGACTTTTCTATTAATGTTTTACAAAGACTAATAAAAGATTTGCGTATCTCTTCTCAGAGGAAATCTTAGGATATTCTCAGAAAGTAGTAATTTTCTCATTCACCCACTAACCTTGGTCCTGTGTCCAAGATGGCCCTGACAGGGCACGTCTTCTCTTACAATTCTTACCA----------------GTGGTGGGTGAAGATAGCAATGTAAATGGATCAAGGCAAA--------TGCATTCCAGGCCTCCAACTCCCATTCCCATCAACCCAGTGCTGTGAAGAC--ACTGCCTCTGTCTTCCTCAATCATGGGGTTGAG-GAAGGATGAATGGAAAGCTCACGGAAAAATTGCAgcaaaaattatttctctgaattcaTATCTAGTCTTTGCTACCACCCTAAGTATCTGAGCTAAAAATGCCACAGTTTAAATTGTGACTAGAAGAATTTGGACT-----ATGAATTATTGCTCCAACTTGTTTATAAAATAGTAGAGGAAGAGATTACAGCCCTATCTGCCTTCCAGTCTCACTTCTACAGTAGACTGACATTGTTATAAACATACAGT-TCCTCCAcatgaaaaaatgacaaattgtTGCCCTTTCAATGTCAAATTTGGCTGTGTTGTTTtctttggacaattaaatgtGAGCAAAATCTAtatgtaccact----gagctatcacaaagtgttcttttctctctgccatAAGACTAAAAACAGCGGTGAATAGAAATGTTCCTTTAGTCTGAGTCTTGGAATGAATATGTGATGAAGCAGAATCATAATATATGATCTGCAATGGATGTGGttggaaaaagaaataagttCTTGTTATAAATCTGTGAGATTTGAGTGTTGTTTTTCACTACAATATAGTTCA-GTCTATC--------CAACTAATCTGTTAGAGCTTGATCTACATTTATGtgtactaaaaaattaaaagataaatttatataCACTCATATCAACCTCCAGAAAACTCATTGTGCTGGTAGACATTGAAATGCTAACCTAA

a score=61808
s chr3            99758591 3604 + 160039680 TCTATAGGAAGAAAAAAATACAG--ATGGCTAAGGAGCACTCCCATTGGATGAAGCATTCAATAAGCATTCAATACCACTTGTATTAAGGCAAATGGAAGCCTTAAAGAGATGCCAC----------------------------------GTCACACATACAATGATAAATCAGTATTGCACTATGGCC------------CAGGGACAAGTGTTAGCAAGGATTTGGAAAT----------------------------------------gcatttcctcaagacattaaagatggatt--ctaaatatctgagcaattccacccccaacatggtaaaggcatttatccacccaagagcttaggggtcacacagtgtgcttcataatcatgtggcattggaagcgatagaaatgtccagcaactggtcattgagtaaggaagatcatatgtacacgtaatgggatgttgtgcaaccacggaaaataaggtcccaatacatgccaagacatgaatgaattttaaacaacgtgctattgaaaaagccattgaccaaaggaccatatgatt-----gataagaaatgtgctaaaataggtaaatattcaaagacagagatattgat---aatttcctagaactagaagagaagggaagaggaaaattggg------------agtaagggttccattgtatggtaatggcaagattctaaactaaggc--tgatgtaattctcacaacaccctctaaatatcctaaaaccatcgaactgtatacttGTATATATGAGT-----TTAAACTCTGTGAATTAACAATACATTTCAATAGTCACATTTTCAAATTGTCA--------GATCAAATAATGATAGAAGAGGCTGTCCACACAGCATCAAAAACACAGCACA-GTCATCATGGAAAATGGTAGG----AGTGTATTTTGTGACAAAAATAGTTCACCT----------GATCACGTGGTTTCTAACCACCACAGCTAAAATATATATGTTT-----AATATTCACAAA-CAGACAGTGCGCAGTTTGGCTGAGCCCTTGTATTCAT---------ATGTTTGTGCTTAGGCTAAGGTCTTTTAATAGTCTTGAAGAGCAACTAAACTTTAA--AACCATGTATAATTTTTTTATAGCTAAGCAGTAGCT---------------------------------------------------TCTCAGGTCTGTTCTGGTGACCGACA---------------------GCATCC---------ACAG--------------------------CCTCT--AGAAATGGTCTCCTT-CATCCTTTTACCAATTAC-CGTCTTCTGGGAGCTTCCCCATTGCTCCTGGCCCCAAGCACTTTCTACGCATA--TCAGCCAGACACAACCAGCTCCTTGTCTGGATAGACTTGGGCCCACTTGGACACTCACTGTGCAGGAGGAGTTGGGAGCAGGGAGCAGTTGGTCGGTTTGGTGGACCTGGGCCTCTAGAGGATGCTGAGTACAGGCAGTAAGTAGTAGTGTGAGAATAAACCTCAGCCCTTCTGTGTCCCCTT---AGTAAAAACC--TCTCCTGGTCTAAACATCTCCCTCGTTTCTTTTCCTCCCTCTTCTCTTTCATTTTCTGGCCTGAGACACCTTGTTAATT---AAAGATTAACAGGCCATTTAGCATGAG--GAGTGTGGTCCAGGTCACAGGTGAATAAATTAATACCCGAAACTTCACACTAAGATGAAAACCAAGTCTGTCTGTTTTATTGCTGTGATGTATCTGTGAGGGCTGGGCA-GAGGAAATTGGTATCTCATTAAAAAAATGAGAGAGTGAGGCAGAGAGGAAACTGCGAGCTTATTAAACATGGTCGGAAAGCCAACTTAATTATGGCTTTCCACTTGCAAACAAGAAGAGATTTGTTATGAGTTCAGGATACTTTATCCCAAGCAAAACAAACAGCTAGCTAGCTACctctctctctctctctcccccccctctctctctctatctctctctctcgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctcCTTTTTACACTAGTGGTGGCTCTGGAGTCTTATTTCAAAATAAAGTCTTCACTGCGGGAAGTCAATTAGAACAGAGGCTGCTGGCAACAGGTCTGCTACTTTCCCTTTCAAAGATTGATTTGAAAACTCTGACCCAGCCTTCCACCTTGTCAGGATGGAA-GGGAATTTGGACAAGGGCTCCTTATTAGTACAAGGACTGGTATGTCTGGACCAGCATATAGGGGATGTGCTGC-AGTCACCCAGGCTGATACAGTGGCTGAGGCTGCTGCTCCTCCAAAAAGGACCACTTTT--TATTCTGAAAGATGCAGATGTAACGTTAAAGGTCTCATGGTCATGGAGGCGAAAT-AGATGCTACAAG-TGGAAACATCTGGCA---------------CTGTATGTTT-----ACGGTGATCGCCGCTTAATGGCTGCTTACTAAGCATCGGCGGCGCATCACCACACTCAACGTGCACAATAACCTCCAATTGC----TAGAATTTACTCTG-----------AGAGATAGAGT--------------------AAAATCAGTTAATGGGTGTGA---AAAGTGTAAGTCCTCGTCTGTTTTACAGTCCCTCGTGG-AAGTCATA---AAGATATGG----------TGAAAGCTACGGTGGTAATAAAAAATGCACTTCAGTAATGAAGTAGGGTATGATTAATAGCTGGAAGGATTTTTTGTGCTGAGGGAATTCAGAAGAAACAGAAACTACTTCTGGTAAGGA------AAATGGCAGTGTCATG-------------TCTGGTATAGCTACAGAAGACCTGGGTGAAACCTCAGCTC---GGATTTCTAAGGTGCACACTGGACACTGAGTGTCATCCTCCTTACTTGTCATTAACCATGACCAGGGGATTGAGATACCATCTTCCCTTTAGACTACTGTAATGCTTTTGGAAAATAGCATCAGTGGGGCACTCATTAGGAACTATGAAGTGCTCTATCAAGGTTGGGTTGGGTTCCATGTAGAGAGTGTCAATTAATAGGAGTTGGAGGACATTGACAGAGACACAGCCACATACATTTGAAAGAT--TTTTAAGTACCCCCAATATTAAATATGGATCATT--AATTACCATCTTGCCTAATGAATTCCATTAAATCTTCATTGGCTATGTAATATTTTCTAAGTCTTCTAACCCAAGAACTGGTttcaggttccatattggtggtagcactgcatcagactaaggctcttactaacaacaattgcaaagt-------------------------tcacataaaatataaaaatcaactttataaaacacaggagagtaactaaag----------gtaaccagaaactgaaggggctttgactctgggtgggaggggaccaccgtgggtgagatttgtatttatgagtcttttcttctgaaagAGTTTCCAAA--TGTGTGGTGTTAAGAAGCAACAGTTCAAACACAGGGCTGCCTTCTTAGTGAATGGAAGAAACT---AACAGAGGAGAAACCCAGAATATGATGGTACCTCGATGTGTGTGGCAGGCATGT-TACAAACAGAATCCCCTTAGAGCCTTGGGTGACCTGTGAGTAATGTGTGCCAAGGGCAATAATCTCTGGGCAACCATAACTGGGGGT-TGATAACCCCAAGCCAGGATTTCAGCAGCTTTTTATAGCTGATA--------GAGTTAGAACACGAATCCAGATAAAGTAATGGAATTTTCT-TTGACGCT-TTGGAAGGACCACGCTTTAGGCATAAAGATGATGCCTGGTGCCT--AAGAACTGACCTAATACTAAGGGAGGAAATGCGTATGCATCAGC----ACAAGCTTTGAAATCAGGCCACTGGGAGATGACCTAGCATCCACTAGTAAGTTAGT
s HiC_scaffold_1 109677469 3702 - 233722169 tttaaaataaaaaagagatataGTAATGGTCAATGAGGCCTTTCATAAAAATACTTAGTTGTTAGTCATTTGAAA-----------AAGGCAAATGACAACCACAATAAGATGTcatttctctatctctgtctgtgtctgtctgtctgtttgtcacacatacacacacacatacatccatAACTATGgttaataaatataaacaataaaatgtgtTAGCAAGGATATGAAAAATTGGAACCTCATACATTAGATACaataaagagcagaaaaagaatttatttaaaatgttaagcaTGTATCTACCAAATGTCCCAGAAATTCTACTTcccaaaaattgaaaacatatgcCCACACAAAAACTTGAATTTCACACAGGTTTCTgcaaaatactgtaaaaatggaaaaga------------------------------------atcct---------------GATGTCCTTCAAC---GGAAAA-------------CTTTGAAAAACTTgtacaaattgaaaaaaatcaactcaTAAAAAAac----------------atatgattccatttacatgaaatcTTCTAGAACAGGAAAAT--TTATAGACAAAAA-ATAGATTGCAATTACTTAAAGTTAGGGTAGTGACTAGGAAGGAAATGGAGTGACTGCTGAAGGGCCAGAATATCTTTCCAGGGCAAAGGCAGTATTCTAAATTTAGATCATGATGT-----TTGCACAACTCTCTGACTATCCTAAAATCATTGAATTATATACTC---CATGTGAGTGGGTTTTATGGTATGCaaattgt--attatttctattaaacatgtttttaaaaagttgaacatGATGATCA--TGATGATTGAA-AGACTGTCCAtgcaggggaaaaagaa----acatgtaATTACAGATAAAAGTAGACGTAAGTACATTTTGTG-------TTGTTTATCTAACTTAATAGGGTCAAATAGTTTCCAATTGACATTGTTAAGGT-TAGATTTTTTggtaaaaagacacaaaatatacAGAGTAAAATATAGATTTTTGCT-GCATGCAATTTCGAATAATATTTATACTCAG-CCCAGAACTTTTGAAAATCTTAAAGAGCTATTAAGctttaattatacatatatatgtaatttataaataagtagTAAATCTATCAATAATCAAGATATGATTTACATGTGCACTAATTCCCTAAAACAAATGTGAAATATGTATTGAAAACATACATTAATGAAAGGGGAGAAAGAGGCTTCCTTTGTCCAGACAGTAGGAAGCTTAGGCTGGGCTGATTTACCTCTTGAGAAAGGCTTTTCTCACTTCCCTGTAACACCTACACATCTTCCAAGAGATGCTT-GCTGCTGCTTGCCCCA--------CAACGAGTAAGTCAGCCAGATCCAACTAGTTGCTGGTGTGGACAGACTGGGTTACAGTTGGTTCCTAACTGGG------------GAAGCAGAAAAAAGTCT-TCACT---GTAGGCTTGTGTTTCCAGAGGACTCTAAA-----GCCGAAGTCAGTAATACGGAAATA--------CTGGTTTGTATGCTCTGCTAAGTAGAAACTGTCCTTCTTCCCCCAACCCTTCCCTCTCATTTCGTTTTCCCTCTTCTATCTCATTTTTTGGCCTGCAACACCttgctaatttttaaagattaacagGCCATTTAGTATGAGAGGAATGTGCCACAGGTCACAGATGAATAAATTAATACCCCAAACTTTACACTACGATGAAAATCAAAGCTGTCTGTTTTATTGCT-TAAAATTTCTGGGCGTGCTAGGCAAGAGGAAATTGGTATctcattaaaaaaatgagaaagtgaggtagagaggaagCTAAAAACTCGTTAAAAGCAGTGGAAAAGCCGTCTTAATTATGCTTTTCCATTTGCTAACAAGAGGACATTTGTTAGGAGTTCAGGACACTTTCTcccaagcaaaacaaacaa--agttaatgacat--------------------------------tatttttgtct----------------------------------------------------------------tttta-gccAGTGGTGGTTCTGGagtcttgtttcaaaataaaggttTCACTGTGGGAAGTCAATTACACCAGAGAATGCTGGCAAGGGGTCAACTGCTTTCATTTTCAAAGATTGATTTGAGAGCTGCTACCCAACCTTTCACCCTGCCCCTATGTAAGGGGAAAGTGGGCAAGGGCTCCTTGTTAGTGCAGGAATC--TGTGTCTGGAGAGGTGTTTAAAGGCCATGCTGAGGGCCATCC------ACTCAGTTATTGAAAAT-CAACTACTCCTTAAAgcaccattttttctcttttggaaaatg-----GAAATGCTAATGACTCCATAGCTGATGTGATTAAATAAGACATCATATGATAAAAACTCCTAACAATAAGCTAATAGCATCAAAATGTTTTAATAGTATTGGCCACCACTTAGCTGGTTCTTACTATGAGTCTAGGATG--TCACTGTACTCAGTTTTCACAACCAACATGTGTAGTACCATAGTTTCTCCTCTGGTGGAGGGTGCAGGGTGGGAGTGGTGGTATATGACTTTATACAAAGTCAACTAATAAGTGAGAGTGGGATTTTGAATTTATGTGTGTTTTAAAGTTTCCCATGGCAAGTCATGAATAAGACATGGTCTCTGACTTTAAGACCTGTAGTGG--AGTAGAGATACACATTGATTAAAAAACAGACAGTGATTATTGACCACAATGATTTAATATGCTAAGGAAATTTAGTGAAAAAAAGAGTTGCTTCTGGTTGGAAACTGTCAAGAGGCAATTTTACGATGTCGAAAAGTATACAGTATAGAGA---AAAATTTGTTTCAAACCTCAGATCTCTTAGTTTCTCAGCtatataccatatatattatttcat----ctAATTGGCCTTCTTGTATAACAAGAAAGTTGAGACATTACCTCTCTATGAGGTTATTGTGATTCTT---GATAATAGTGTCTATAGAACACTCATTCA----TATGAGATAGTATATtaa-------tagaattttata-aaatagtg-------aTATGTTTTAAGAAAGATT------------------TACACTTGAAAGACTGTGTTAACAATCTCTCATATTAAATATCATGCAATAAAATTGTCCTTTTATCTAATGAATT-TATTTAACAATCATTTGAATTATA----TTTGTAAGTATACAATAATGTGAACTGATTTCAGATTCAATAACGGTACTAATACTGAATCACACTAATCTTCCTGCCAATAAAGATTACAGCTTATATTAATATTTCTGCCAATAACAATTGCATAAAATACAAAACTCAAC-----AAGGCCCaaaagaataactgaaaaaaaaaaatcagaatcagaCACTGAAGAGGCTTTGACTCTGAAAAGAAAGACTCCTCACAGGGTGAGATTCGTATTTGCCAGACTTTTCTTCTAAGGATAGTCCTAAAGCTGTGTAGTGTGAAgcagaaactgttcaaagagaaGGCTGAATCATTAGTGACCACAGGACACTGAAAACAGAGGAGAAATCTAAAA-ATGATTCTGCCATACTTGAAAGAACACCTATATCTACTAATATACTTTCCTCAAATCATTGATTGACC--TGAGTGGGGTTTGCCTAGGGAAA-AACATTAAGGGATAAATAAGTAAAAGTCTGATAAACATGGACAAAGATGTTGATGACTTTCCATTGCAGAGGAGACAAACAATTTAGAACTTGAGCCCAGCTAAAGTCTTTGTATTTTCCATTGAAACTAACAGAATGGCCATAGTCTAGGCATAAAT-TTATGCtatatgaataaaaaaattgaccCAAGGCTAAGG--AGAAATGGATATAAACTAACACTTACAAACTCTAAAACCAGGCCATCATAAGATAAAAGTG-ATCCACCAGTAGTTTAAT

a score=28420
s chr3            99766134  978 + 160039680 TATGGTGCTAATTACTGGAAATTATTGAATCTTACTTT------------ATGACCTTAAAG--TACAG---ACCTATGTTTTTTAACCACAAAGTAGAAAATGCATTTATATTTGTACCCCGATCCAATGATCCAATATTTAATTAGTTCATTATGTTTGGGCAGATAA--AGGTCCAGT----GACTTTAAATCTTAAATTTTAAATAGCTGTTAATGCTCCTTAATGCCAATAAAGAGGATGCTTAGC------------CTTCAGTCACAGGTAAGAGGAAATATAAGTCCA------CACCTTGACCTGGTGGTCCCTCAACATAGAATAATGACAG--TCAG-AGGCTTCAGTCTAGGTCAACAAGATAAA-ATGCAGTGGACATTGACGTTTGTAACATTACGCCAAGGCC-GACCTTCATGTATCTTTACTGCCAGTGCTTATCTATTCCCCTAAAAGAAGGCTCCTCTGGTAATTCTACATAGCAGGGTTTCCAGCAGCTCTCCAGTGGAGCTAAATCCCGATGACAGTAATTAATGTGTTCCATCAGCACCCATGTCTTACATTACAGCTGTTTTATC-TGAAATTTTCCAAGTTCAGGAGTTAGTAAATTATCCCTTCT-CCCAGGCCCCATCTTTCCTCTCAACTCCTTCACT-----------CTTCTGTTTGGAATAACTTTGACTTAATGATTAGTGACTTCATTGAATCCATCAACACTAGTGAGAATTGCATCAGTCTCTTGAGTATTCAGAAAAACCTGACCTGATGGGAAACAGCTTACCAA-AGAACACGCAGTCTGGAAAGCAGAAGAGGTGGCCAAGACAGATAGGGCAGAGGTCAAGGCAAGGCTGAAGCTGA------AAGGAACCCCTCAAG-AAGGCATTACGGAACAATTCTAGCTGATTGTCAGACTCTGAAGAGGAAATTTCCACAGCAAATAATATGTGATTTGAAGCTAGATTTCAAAGAAGAAAATTGTGTCTATGCATCGAAGAAATA---CCtatt----atatttttattttttttt
s HiC_scaffold_1 109682624 1012 - 233722169 TATGGTACTCATTCTTGGAAATTATTTAGGCTTGTTTTTAGGCTAGTATGATCATTTTAAAGGGTGTAGTCTACAAGTGCttttaaac--------agaaaacagatttATATTCACA------TCCAA-----CAAGATTTAACCTA--------GAGTAGGCAGATAACAAGGTGAAGTTTATGATTTGAAGACTCAATTTTTAAACCTTGATTAATGTAGCTTAACACTAGTAA---GAGTCCTTAAAAAAACCAGATAGCTggtgtaaaaaaaacaaaacaaaacaaaacaaaacaagcatctTGATTTGGTGGTCCCTTAAGACAGGATAATGAAAGAGTCAGGAGTTTTTGGTATACATAAAAGGGATAAATGTGTAATGAGCACTATTATCTCCAGCATTACTCTGAGTTCTGACCCTGGTATTCCATTGCAATCAGCATTTATCTTTCCTCTCTGAAGGGAAATATTCTAATAATCCTGTGTATCAGTGCCACTAGCTATTCAGCAGTGCATCTAAATCCTGATGACAGCAATTAATGTATCCCATCAGCACCCATGTCTTACAT-ACAGctgttttttcctgaaatttgcTAAGTTCAAAAATCAAAGAGCTACTCTTTCTTCCCAGGTCCCATCTTTCTTATCagctcccttcctttcccccagCACTTTGGTCTGGAATAACTTTCACTTAATGATTACTGACTTTATTCAATCCATCAACACTGGTCAGAATTACATCATTCTCCTGGGAATTCAACAAAATCTGACCTGATGGAAAACAGCTTACAAAGGGAATTCTCACACTGAAGGTCAAGGGCAG----CGAAAAGAATGAGGCAAAGGACAGAGCAGAG-TGAAGCTGAGACACGAAGAAAGCTTTCAGGAAAGGGACTTCACATCAAATTCAGTTTATAGCCAGAATATGAAATGACATTTTTCCCGTCAAATAACAGGTAAACTGGAGCTAGATTTCAAAGAAGGAA----Tgcttatcttttataaaaataggtcgtattcttggtatttttgtttttgctt

a score=13680
s chr3            99772055 682 + 160039680 aaatttaaaaattaaaaattaaGGTACAACATACAAATATAAGTTAGAGATGATTATTTACA-CAGCATTTTTACATTAAAACTACTTT------GGAATAAGAAGTATAAGATGATCAAAATAATCAGAATATTAAAGAGTCTTGTTGCATAAAAGTTTTAC-CATTTTATTTTTTGTCTCTTCATTTTCCTTTAATGTGGAAGCACCAAATATATGTTTTATTGATTGGTTGAAATTCATCCAACTTTTCATTTCAATTCATTCTAGCACATTCTACAACAGGCTTCCCCCATCCTCCAACTTGAGAAATTTTCCTCTCACTTTAGGACACTGATGTAAGTAGAA------AATAATTTTTATGC-----------------------------------------------------------TGAAAAGATATCCAGGCAGAAGCTCTTCAGAAAGATGGAATGTAAAC-CAAAGCTCTTCCTCTCCATTAGTCATCATAGCCCCACCCTCCAGCCTTTACCTC-GCCCATCCCTATTCCATAGGTTTGTGAAAGACCAGCTAAAAATGGTAGA-----GCTGAAAAAGAATGTGGAGG----------CACAGAAGGCTGACTGTGTG-TTAAGTGGATGGATGATTGA-CATCTCTGATGCACAGTAACCTGCTGGTCTCTGTCTAGCTGGACTTGCAAA-ATCCCCTCACAGATTTCCATATGGTCTTGAAACCACTTTAAACCTCTGACCAAAATTAATCTTTAAAT
s HiC_scaffold_1 109711471 762 - 233722169 AAATAGAAAGTTTAAGAAATGAAGTA--ACTAAAAAAGTAGAGCAATAAATGCTTGACTCCGGCTGTGCTTTGCTACTAGAGCAacattaatttagaaaaaagaattataaaa-aatcaaaataattacagCATTAAATAATTATAGTGCACAAGGAACACACACACTTTCTTCTACTTAGCCTCCTTTTAATTTTAAGTAGTAGAAGTATATATTTGGTTCACATATGCATCAAAATTTGCTCAACTTTACATGGTATTTCATCTCTAAATAGTCTATAATGGGCTTCTCCTATCTTCCAACTCCAgaaatttt-ttgtcctttttggaCACAGATGTATGTAGGAGGAAGGaggggtgtgtgtgcgtgtgtgtgtgtgtgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagatatgctgGCAGAAGCTCTCCAGAGAACTGGAATGCAAAAGCAaagctttttctcctcctcc-ttgccATAACCCCAACTGCAATTCCCCACCTCAGCCCACCCCCGCACCATATGTTT-CAGAAGACCAGATGAAATTTGCTGCTCACTGTAGAGAAGGAATgtgaaagaaatagagaaaaaagaaatttgcttttGTGAATTAGGATAGGAATAATTCAGCTTTTTTG--GTAGAGTAACCTAATAA----AGGCTATTTGGACTTTCAAATATCCCTTCACAAATTTTTGTGTGGTCAT-AAACCACTTCAAATCTGTGCTCAAAATGAATTTTCAAGT

a score=38206
s chr3            99776842 2994 + 160039680 TCATACACACTCCCTGATCCCAAGGTGACTATGTAAGTACAGCAATCAGCCATGGCTTCTCTGCTGTATGCTTTGTGGGTATTTGAG-----TCTTCTTCTAATATCTGTA-TGTTTTACGATCTCTTTTCATCCACCGTGTCACTTTCTCCTCACGGTAGCCTTCTAGGAAACATTATGATTTAGATTTAT-------------------TCCACATTTGAGCTATACAATAAAGCCCT-ATGACTCCAGAGTCTGTGCTTTTTGTTTTTCAGCAACATTTATGGATTTTTTTCTTTTAAGAACAATATAACTCCACTTATCCTTAAATATATGGAATTCCAGATTGGTCATCAGAAGACAACCTAAATCACTTGCT------CTATCCTGTGATAGCTGTGTCCAACCTTTAGAAGATTTTAGTCTATG-ATAGTTTT-ACAGCATCAAAGTCATTTTATACATAAAACTTTGTGACCTGGAATTTAGCATTGGACAGACCTTGCAGCCCTTCATGTTTACAGTGTCACGTGTTGGTTTTGGTTCTCCTGTGACATTGGTTGTAAAACTGTTACATGGAGAATCATTTTTA--TGGGAAAAGAAAATACTC--------CCCGAGTATAACAGCC-------------ACTGTATA--TCACAGAGGAACAGTCCCTAGGCCTGG---CATGAACAGGTCATCTTCGTTCCTTAGTTCCCATGATC-CCACTT--GTCTTctcagaagtttgcgcatgttgggcaagagctccactactgggctgcaccctcagacccAATCCTTTTCTTAATCTAAGTAAA-TCCTGATGCTTCTTTCA--ATCTCATCTGCACAGG-------GAGAGACACTTAGAATGGCTATCTTGAGATAGTGAATCTC-----ATATAGACCCCAGCTAAATAAAGCAAAGTATGCCTACTAA-GAAGAATGTCCACAACAGGGAGCATTTGCCTGGGAAAGCACAGCTCTGTCTAGATGACCTTACCTGTGGGAAACACCA-TCTAACA-GCAGGTGAGAATGACAGCCACATGCTTATTCCGTGGGGGGAACCATGGAATCTGCTCCCCCCTAAGCCTAAGCCTCCATTCCAAGCCTGAGATTCCAGGATTCACATTGTTAGCCAGTTCTTTGGATTCA-----TATAGAG-CAGAGCTTTCGAATAATGCAAAC-TGTCAATTGAGCTTACTTAGTTTACTCCCTTGAGCTATAAACTTTGATTCATTGCCAAATACACAATGAGGACTTGATAACCACTCCAGGTCTCTTCACTCTAAGGCCGGGACTTacacacatgtgcacacacgcatgtacacacatacacacacacacacacacacacacacacacacaTGCGTGCTCCCACATTGGGGTAAAAAAAAAAAAAGGAGTAGAAGAGAAAAGGAGA-GGGCACTTCAGGGTGTGGGAGGTCTACCGAAAGGTCTGAGATTGAAAAGGACCTAGAAGGCTTTGGCAGTGTATTG-----------CCAGGTGTCATGG-------AGGAAGGGCTTCAGGAGGGAGGCGTGGTGCCCACAATAAACTTTCCTTCATGAGGATAAGGGCTGGGAAGAAGGACCTACTATGGTGACTTTTTCTCCTTTAATAAATTCATATTTgaaaggaaaagaagggagggagagagggaaggagggagaaggaaa--aggaaagga--------aaaaagaaaatagacgggagaaggaaaaaagaaagaaaagggaagaaaggaagaaatgagaggaaaagagagCATTCA-GCAGCCATGAGGAGCCGGGATGCTTCACCCTTACAAGAACTAATTAGGCGAAATT--TATTCCTGAC---AGAAGAGTTTCATCTGTGGGTGAAACAGAAAGCTTTCCTAGGGAGTGGCTGTAAGGTTCAGCCATGGCCCAGGGCCCAGACCACTGGGCAGGGGCGCTTCCTGTTGGGAGAAGGAGCCACATTCCCCAGTTATTTGCGACAGCTTGAGGACCCACAGGCTGCCTACAATGTGCAGACGGCATAATTTAGCATGAAGGTTGCCAACAATTTTTGGCCTCAGCTTTTTAACTGGTTTTCATTTAGCAGCAATTTCATGTTTCCCGGGACAATTCATGTTCTAATAAAGAAAAATTCAGTGACCTTTAGTCAACTTGGCAAGTGAAAAGGTGGGTGACAGTGATCCAGAAAAAAAAAAAATCATGACCAAGCTTACCGTCCCCACTTAAATGTCCCAGAGCAGCCATCAAGCCTTTCATT--CTCAAAGGGTTGGAGAGAACCGGCCTCTTGAAGAACCAACAACTGTGCATGCTCATCCAATCAAGCGCTTTGAGATCAACTGTGACTCTACAGATACCAGTCC-CGGGTAACAAATGGAGCAA----------CATAATAAAACTGGG---ACGAG----------------TTCTCATTCATGTGCCACACAACCTCAACCACAGCCTCTCACAGGGAGCATAAATACAGGG--AAAACAGCCATATCATTAAGTATTTCAATATACCATAAATCAGCTCAGGATGCCATATTTCCACACTTTA--GAACCTTACAGTTGTGATCAGACA-GCATTACTCTTGCCTGTTGCCCACCACACTTCCAACAAAATATTAGTTATCAATACCTTAGAGACAGAATGTCTTCCCAGACATACAGAGA------TTTATTCACTGTCCAGGTATAAACTCACACTTGAATAACAGATACCTCTTGGGCTGCCAGAATGGCCGCTTTACCTTTATGATAGTGCCTCTAGCCTGGCAATG--TCCTGCAAGCCCGAGGTA-GAGGCAGGGGTACAGAAAATGACCAACCATCCTTCAGCTTTTGTTTCTTCAGACTTCAACATGGACACAGCCCTCTCAACTTTATGTTCCATGTGTAGAGAGGAGAAACAGACAAGATTCTGTTCCTGTGACAATGTGG-GGCCACTATCAAG-AGAGTAGAGATGTACCCACTACACG----GGCTTAAAATGGATGT-------TCCAGCGTTTGGTT-----------------------------ACTCAGACCTCTTTG-CCTATGCCTTGG-ATATTCGCCTAACAGCTACATTTTAATCACAAAGTAGA-TTTTTAATTTCT------TTAATTTTTAAAATGttttct------ttgctttg
s HiC_scaffold_1 109715437 2765 - 233722169 TCATACGC---CTATGATCTAGGAGCAACCATTTAAGTGAAGC---CACTTCTGTCTTTATTGTCATGTATTTTGTGGACATTTGAGAAGTTCCatgtaaaaatttctttaatttcttatggT-GCTTTGTGTCCATTGTATCACTTGGGTTTCACAGTAGCCCCATTGAAATCAACGTG-CCTATATTTATGTTGAAATAAGTATTTTTACCTACATTTA---TATAGAAAAAAGCTATCATAACTCCAGAATCAGTGCTTCTTATTTTTAAGGAACATTTAT----CTTCTTCCTT-------GACATAAAGTC-----TTCTGGAATACATGGCACAACACAC--ATTATGAAGTGAATATCTAAATCACTTTGTATCTGACTGTCCCATTATAAACTTGGCTGATATTTAGGGGTTTTCAATCTGTTTACAGTTTTTACATTGCTGAAGCCATCCTATACATAAAATACTGTAACCTAAAACACAACATATGACAAATGTGGAATTTTTTTGTATG------ATCACTTGTTGATTTTA-CCCTCATATGAAACAGGCTTCAAACCT---ACAAtccaaatcattttaaaatgagaaaagaaaacatttagacTGTGCTCTATTTTAAAAACTCCTTGGCCTTGGAATTGTACAGACCAAAAAGTAATAGTCTGTAAAAATAgttccatgaaagaaa--------------aaatactatgaTGGTCACCTAAGTCTTCCTAG----CTCAGCATAT-----------------------------------ACCTTATTCATTTCTTTAACTACATAAAATACTAATGGTTTTTTCATAGTATTCATTGCAGAGGAAAAACTGAGAAATCGTCCAAATGGTTACTATGAGATAGTGTATATAGAATGATACATGAACCAACTGAGAAAAGCCAAGCATGCCTCCGAAAGATGGATGTTC--------------TTGACTGGGAAACTATGGCTTAATGCAGTAGA---GATCTGTGAATAATGCCAATCTAAAAAGCAGGTGTAAGTAACAGTACC--------------GGAAGAGTTTTGGAACATAATCTGTCC--------------CATTCCAAGGCTAAGTTTCCAG--TTTTCATGGTTAGTATCTCTTTTCCATTAAGGAGTTAAAGAGGTACTGCATTGTCATAATGGAAATGTGTCATCTCAGTAAACC--ATTGCTTCTTTTGAGCTGCCATCATTGATT-ATTATCTGAAGTACTATAAAGATCTAAT-----------------------------------TTAT-----------------------------------------CACAACCACAGGCTCAAGACCAAGAGGACTCACAAGT-------------AGAAAAAGGATAGAAGAGAACAGGATATAAGTATCACAGGAGGC------TTTGCCCA------TGAGAT-----GGGACCCAGAAGACCCTGGCAGCATGTTGATATTAAATACtcaggagcagtgataaggacAGGAGAAAAAACAGGAGGGAAAAATGGTACCTGTAATAGCCTTCGTAGCATGAA--------------------------------------TTCTAGCCTTATAACTTCTTA--------------------GGAAGAAATGCAGATGAGGTAAAGCAACCTAACACAAGaccttctttaaaaagtaaatttctacttgaagggataaaaaa-------------------gaaataaaaggaaaaattacaatTCATGGACCTAAGAGGAACAAGATT--TTCATGCCTAGAAAAACTAATTAGGCCAAtgtgtttttcttgattttacaATAGTTTCATCTGTGGGTGAAACAGAAAACTCTCCCTGGGAGTGGCGGTAAGGTTTAATCATGGTGTAGGGTCCAGACCACTGGGCAGGGATCCTTCCC--------------------------ATTACTCACAACAGCCATAGGACCCA-AGGCGGCCTGAAATGTGCAGACTACATAGTTCAGTAAAGAGATGGCCAACGATTTTTGGCT---GCT----------TTTTCATGTAGCAAAAATTCCATTTTTCCCAGGAtagtttatgttttaataaaaaaaaattaggagatCTTTAGTTTACTTGGCAAATCAAAGTGTGGGTAACAACAGTCCAG-------AAGAATAATTACAGAGCTTACAGTCCTCAC-TAAAGATCGCAGAGCACCCATCCAGAGCTCAAGTGACTCAAAGAATGTCCAAAA-----TCTATTGAA----TGACACTTGTTCA-ACTCATCAAATCA--TGGTACTACACAAACTGTAAATTT--AGATGTTAGGCCTCAGATGGTGAAAGGAGAAAACAGTTCTTCCTCAATAAATCGAAGCCCACAAGCTTCAATAGTGTTTAATCCCTATTCCTGTGCCACGCAGCTTCTACCACAATTTCTCATGGGAAACATTAATATCAGGCAAGAAAAGCTACATAATTGAGTACTAAATTAAACTGTAAGTTGATTTAGCATGTCTCATTGTATTCCTTAAAGAAACTCTATA-CTGCTAGCATAGATGAGCTGCCCACACC---TACCCACCCCAATTCTAGCAGAAAATTtg-tactaatattttaaaaat----tattcttccaGGCATATATAGggatctttttttccattttccaaacATAAACTTCCACTTGAACAGCAAAATTTTCTTAGGGTGAAAACATGTCCAATTTATGCTTGCAATCAGCATTCCAGCCTGACAGTGATCACAATAGGTCTACGGTGTGAATCAG-----CAGAAAACAAcca------tttctgtttgtattttccttg----------------------------tttgtatttcttgtttgtA--------------------TTCTCCAGATGACAATATGGAAGCCACTATCAAGTATGGCATAGATTTGCCCATCACACACATCTGCTTGAAACAGACTTGTTGGCATCTGTCATTTTGTTCTTGGCTATATCAAATTAGTGCAATTTGGACTCAGATTCTTTTGCCCCATGCCTGAGTCTACTCACTTAGCAGTCTCATTTTAGACACAGAGAAAAGgttttaatcttttatatctCAATGATTATAAATTTCTCTTCTGAATTGCTTTG

a score=11215
s chr3            99781995 639 + 160039680 ATTTCAATGTAATAAAGCTTATTCTGAGTAATTTAACCATGGAAATTCTACATTTTAGGTGTGAATAGAAGAAACATAAAGGAACTGGACAAAGACTCTGGGTGTGGGGTTCTTATGAGACTCTTAGTGTAGCATACATTTTCTATAAAAACACATGGTTGTCTTCCCACTGCTCTTCAACCTAGAAGCTAACTCAGAGAATCACCTAAACCAAGCTGGCTGTGAC--TAGCAGAAAGGAAT---GGATTAGCAAGTCTTGGTGTTTTTCTGGTTTCATGGTTCTGGTGATATTAAGGACTAAGAAAAAGAAATGGCCATATGTTGGACAGTGTTGAATTTTGAATCATATTAAATGTACTTTATCCTAAGAAAAGGACCACCA-----------GAAAACAG-------CAATCAAAATAC-------TGAGTGAT----------ATGGAAAAGATGACAGAAATATTTGGATTATAATGTGGAAAACTGTCGGTATTTATTTTAAAGCTTCCTACACTACAGAAAAGCATGAAGTAGTAATTTCCCCAAACCTACCACTTGTAGTTTGTCTTGCCTACATTTCAGAGAGAAATAA---CTCCACACAT---TTTGTATGTATGTAAATCAACACACATGTCTTGTATTGATGGGCATCTG-GATAAAGGCAATAGCTATTTAA
s HiC_scaffold_1 109718714 639 - 233722169 ACTGCAACATAATCTAGCCTGTTCTGACTAGTATAGCTACTAAAGCTCTATCTTGCATATGTGAATGTAGAACAAAGAGAGGAAAGGGGCACTATTTCTTGGTTTGGG-TTCCTGTTGGAATCAGA---TGATGTACACTTGCTG---------------GTCTGCTAGCCCCTCTTTGGCTCAGTAGCCACCTCTGAGCATCACAGAAGCCAAACAAGTTATGACAGTGGCAGAGGAGAAGTAGGAATTAACCAGATTTA---TTTTCCTGGTGTCATTGTTTTGATTAAAGTAGCTACATGTACAGGAAAATTTCAATGAACC--ACATATTTAAGGGTTAGAGCATACCAAATATA--------TAAGACAAGAACCATCATCAATATCATCAAAAACTTTTACTTCCAATGAAAAGATAGTGAAGTAAGTCATTTACTtcacaatgaaaataattatacatttattttgcataaaatatttaaagcta---------aTTTCAAAGTTTCACACAACATAGAAAAACATAAAGTAGCAATTGTCTAAAACCTACTACCTAGAGAAAGCCTTACTTACACTT-----AGAAATCATCTCTCTGAACATCTCTCTGT-TATGTACAAATATGCATACATGTTTTATATAAACTGGAATCTGCTATTAAAGCAATATCCATTTAA

a score=88827
s chr3            99784701 2237 + 160039680 TCACGAGATCCGAG-CGGTGACAAGGGTCTTCAGTGATTGGTCCAGAGTCT--GAAAAATAA-ATTGAGAAATATGAAACAA-ATATT--GGGAGAAGAGGGTGACACAGAGTTGGGTTTATGGTAGTG-ACACAAGCTGATATTCTGGAAGGCAACTCTCTCCTTGCCTATAACCACATAGCCTGGAGGTTTGGAGAGGAAGCAAGTAAAGTTCTGGGCGTTTGCTCTCAGTGGCTTTCTCAGCTGCTGGGCACTTGGCACTGGGCTAACTGTCTTGTTGACTTAA---GATTCATTGATCAGGAGCAGGAGACTGAGCATCCTCTCAGAACAATACTGGAAAGTAGCAAGAACAGACTAG-----------------------------TATTTTCCCAAGGTTTCTGTCCCCCTTCCAAAAGccatctccccagggtgatttctaactgttttcaagtttgttagttcctaatat-ctgtcttcattttgtctcctgtacttcttaaagcgttgactcaggggcaaagaagagagagccattgcagTTGACTGTCTTCCTGGGTCATTGTTTTTCACTTCTCTGGTAATCTGAATGGGGTTAAAGAAAGTGCATAGAGTTgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaTCTGGAATGGCTGACGGGAGA-AGAGGATGCTGAAAGAAGAGAGAGAATTTATGTCACTCCAGGACTTTTCATATATTTGTGGTTGAACTTGAAGTTATTGCCTGATTTCATTGGAACAAATTAGGCTCAGTTTACTAAACTCAGTCACCATGGTCATGTGGATGTCAAACTATCATCACTGGCTTCATTCTTCCACAACCTCTGGGATCATGATGTTGACCTCTCAGGCTAGATTCAGACATGTGTAAAGCAGTGGGGGCGAACCGATTCCCTGCAGAA------AGTCGTGGTCGGATATTTCCCAGAAGGCACAGGATATATGTGCTTACTATTATTTCCACAATTTGAAACTGAGATTTCCGGGTACTTCTTG--ATAAATAGAGTCTTGGCTGCTCTGTAAAATTAAATATTTCAGATATTTTTTCTTTCCTTTTATTCTTACCTATGTATAGTCATGGAAGTTTCCCACCAGGGAGGTGTTTGGATTTCACTGTCAATGTGTAGGATCTCATTGTTGCCATTACTGTGTTTATCAAATTCCTCCTGGTTATGGGCCATTAAGCATCCCACCAAAAAA-TATAAAT-CTGAAATGCAAGGTAATCCAATGGGCTAGATACCCTTGAAAGCCATATCTCCATCCAAGCACACATGGGAGGCCTCTCCCATCTGGCCAGACCTAGCAGCTGAAACTCACTCCTGAGATTTCCCGTTCCTGTCAATCACAGCATCCTGCTGTGAACCTCATGCTCCCTGCAGCTCCTCTCACACAGACCAT-----CAGACTGGCAGAACAAGTAATCACATGGGCTCTGGTCCACAGTGCTAAAGCCCATTACATTCCAGGAGATAGCAATGAATCAATTCACGTCACCACTACAGCATCCCTACTTTGCCTGGAGTTCTTCATCCCAGAGGGTCCGCAAATATTTTGCAAGCTGATACCTTGTCCAAGCTGTGCCTAAGCCTCtcacttcatccaccactggaatatatgaacagcacctcagtggtggaatgcagcagctgctctgcagccataccacagtcccatggacctcagctta-gacaggaagccaagaggaataccatatccaattgaaaggacagggg-ggatttcaggaggt-aaaattcactgagccaaacttggaagctggccaaagcacctggttaacacccttcttctccccagaaaccgtgggtccttgtgaccaccaacagcctgact----------ctggtCCCCAGGCACTGAGCAATGTCCTTTTACATCTAAGTCCAAACT----AAATAACAGGAGGAAATGACAGTAAAATATTGTTGAAACGTAAGTACCTTTTGCCCCACACTTGT---GCTTAGCTAGTGTCAGTCACAATATAGTGAAGGGAAATGTCACTGATATAAGAGTGAAGGTATG-GAGGGGGCCAGGGT-AGCTGGTCATATTTTCTTCATGGCTTCAGGGGGCTTCTAAATCTAAAGAAGCTTCTGATATTTAGGATTTGGAAGCCAGAGCAGAA----GAGGCAAGCACCTTGCCATGACACTGGCTTTGAAAAGGCTTTGGTGGGAGACAAG-AATCCATAGACCAGTCT-TCTCTCCCAGC
s HiC_scaffold_1 109723512 2205 - 233722169 TCATGAGCTTCCAGACTACAACAGAGAGCATCAGTAAAT--TTCATTATCTAGGAGGAACAAGATTGAAAAATCTGAAGCAGCATATTTGAGGGGAAGAAG----CATGTGGTTGGGCTTATGTGAATGGATGCAAGAAGCAATGCTGAGAAGCAGTCATCTCCTGGACAGTAACTTTACAACTTGG---TTTGGAAAGGATAAAGGTAAAAGAATGACTGTCTACTTTTGACAGGCTCTGTAACCAAGAGGGATTT-------------TTTTGTCACTGACTCAGACTGCTTTGTTATTCAGAGGGTGTAGGGCAGGAATCTTCTCAAGGCAGTACTGGGCAGTGGCAAAATTAGATTGGACTTACTCCCCCAGAGCTTAGTTGTGATCTCTTCTCCCAAGTCTTCTGCTCCC------AGGTCAGTCTCCTCAGGG--ATTTCTAACAGACTTTAA--TTG--AGTTCCTAAAGTTCcatcttgtttttgtcttctaTACTTTCTATAGGATTGATTTAGTGATAAAGAGTGGAGC-CTTTTCTAGTACACT--CTTTGTGAATCATTGTTTTTCACTTTTCCA-TAATGGGATTGGGGTGAAAGAAAGGGCAtaga---------------------------------------------aaaaaagttaaagcaCATTCAGAAAACAAAGGAAGCTGGAGGGAACGGGGGGAGGGAGAAGATGCTGAAAGaagagacaaaatatatatagttCCAGGA-GTTTCATACATTTGTGGTTCAA-GTAAAGTGATTCCCTGACTTCATTGGAACAAATTAGGTCCAGTTTCC----CTTAGTCTCCATGGTCATATGGATGACAA-CTA--ATCACCAGATCATTTCTTCCTGCACCACTGGGACCTTGATGCTGACCTTTGAGGCTGGATTCAGAAATTTATGAAACAGTGGGAGAGGAGAAATACCCTGTAGAATTACAAAGAATTACAAAGAGATTTCCCACAAAGTTTAGAAAgtacttttttgttatt-ttcccatGATTTGTAGAAGATAttttcaggtgtttttttttataagtcaagcccagcctgttgcataaaattaaatatttcaaatatttttcttttctttttatccttcccTATGTGTAGTCATGGAAAGCTCACACCAGGGAAGTGTTTTGATTTCACTGTCAGTGTGCAGGATTTCATTATTGTCATTAACGTGTTTATCACATTCCTC-TAGATACGGACCATTAA-CATTCcaccaaaaaaatataaattctgaaaTGCAAGGTAATTCAATGGGTTAGATATCCTAGAGACCCCTATCCCCATCCCAGCACGCATGGGAGGCCTCACCCATCTGGCCAGACCTAGCAGCTGAAATTCTCCCCTGGGGCTTCCCATTCCTGTCAATCACAGCATCCTGCTGTGAACACCATGCAGCCT----TTCCTCTCACACAGACCCTTAGCTCAGACTGGCAGAACAAGTAACTGCATGGGCTCCGGTCCACGTTGCTAAACCCCATGACATTACAGGAGACAGCCATGAATCATTGCACGTCACCACTATAGCATCTCTGCTCTGCTTAGAGTCCTTCATCCCAGAGGGTTCCCAAATATTTTGCAAGCTGATACCTTGTCCAAGCTGTGCATAAGCCTCTAGCTTCATCCACCACTAGAATCTACACACAGCACCTCTGCAGTGGAATGCAGCAGCTGTTGTGTAGCCGCATCACAGCCCCATGGACCTCAGCTTGTGACAGGAAGCCAAGAGGAATACCATATCCAATTGAGAGTACAGGGGAGAATTTTAGAAGgtaaaaattcactgagtcaAACTTGGAGGCTGGCCAGAACACCTGGTTAACACCCTTGTTCTGCCCAGGAATCATAGGTCCTAGTGATCACCAACAGTCTGACTCTAAACTCCACTGGCCCCCAGGCACCAAGCAGTGTCTTCCTAAGAATAATTCTATGCTCTAGAAAGAAtaagaggaaa--acaataaaatattgtgGACAT-TAAGAGAATTTTATCTCACACCTGCTAAGCTTAGCTAAT----GTCACATCAGAAGGAATAGGACCATCACTGCGTTAACAGTGAAGGTGTGAGAAAAGGCCACTGTCGGCTGGACTTAT----TTCATGATGTCAAGGAGCATCCAAAGCAAAAAGAACATCTGATGTTTTGAAATGATTACATAGGACAGAGCTACAAAACTGGTTTGTCATCATGATGTCAACTTT--AAAGACTCT-GTGAGAGAGAAGTAATTCAT----TAGTCTGTTCCTTCCAGC

a score=66145
s chr3            99793334 3583 + 160039680 [encoded data, 4147 characters]
s HiC_scaffold_1 109730927 3954 - 233722169 [encoded data, 4147 characters]

a score=28538
s chr3            99797404 1127 + 160039680 ATTTGATGTGCATGCATATTTAACACAATATGCTACATATTTGGACCACCAAGATAGATAATCTGGAACTCATTTTGAGGCTTAAACTCAGAGACGTGTTGTGTTTGGTAGCCTGGGTGGGATGCTGTGACCCAAGGA--CTAGAGAAACGATATAT--GAATGGTCTCTGAC-------ATTACATCAT--TATCCCTTCCTGGATCATACCAT--CCATAAACTGCAAAGCATCACAGG-----ATGACATTGCACAAGCC-----GGCCAGGGAAGAGTCTAAAAAGATCTGTAGAA-----AATAAGGCAGTGGTCAAGGAGTAGGCCAAGAGAAGGGTGGAGGGAAGGTATCTGGTCTTGCATGTGCAAGGAGGTTTTCCAGACAGGGAAATGCAGAGAAATCTCCCTACAATAGTGCTGCCCTCCTGGTGACAGACAGACTCATGATTCAGAGGGAAGCATCATAGCTCACTTTGTCTTCTCACTCAAGGACTTAGAGCAAGTGCATT--TAATTGCTGTGTTTACTTTTGCCGTCTTCTTGCCAACAACTGCAG-GGGAGGGTAAGCAGTTCT-GGCTGGAGTGTCAGGACCCAGGGGCATGCTTCGAAAGTGCAAGCCTGGCATGACCTCCT---------------------------AGCATGGCTGCAAAGTACAAACACCACCAGGCTTGACC-CAGGCTCTTCAGAAGTGGCATCTGAGAAGTGTGATCC--TTGTTGACAAGCCTCCCATGAATGTCCCAGGAGATTCTTCCTAGCAGGAAATTGTGGCCCTCTGATGAATCAGAGGACTTCCAGACCTTCTGAGCATGGGGGGTGGGGGGAGAGTGACACCATTTATTCTTTCAGAGTAGAGGGGAAGACTATGATTCACTGGCATATAGGTGGGCTTTGGAAAGA-AGGACCA--CTTTAGTGTTGATGTTTCCTGATGATCT-GTACTGAGCGGTAAGTGGTTCTATTTCTAGAACTAAGACTTGAATGAAGCA------ACACATACACTCTGGTCATGTGGATTCCAGCTGATTTTAAACTCTAGAACCCTGGAAGAACAATTTGCCCAGAGTTGACACTAAACTTTGCTTTTCTTTTTGCTTTTCAGAAAGGGGGAAAATGGAAATAATATTTCTCAGAAACAGCTCATAGTTATTTCTGCAAAAAAAAAA
s HiC_scaffold_1 109734963 1129 - 233722169 ATTTAATATGCAT---------ACACAGAATGCCCTTTATTTGGTATACCA-GATGGATATTCTGGAATTTGCCTTATGGTCTGAACTCAGAGGCCTCATGGGTTTAGCAGTAGGGATGAGAGGTTTGGGGCCAAGGAAACAAAAGCTGTGATGTAATAGAAAGCTCCTAAACCATGCAAACCATACCATGCTACATGTCACAGTGTCATGCCATAGTCATGGCATATTAGGTAGCACTGGCCCAGGCAGCACAGCAGAAGCCAAGGTGAGTAGAGATGACTCCAGCAACATCTGGAGGGGTAGGAATTACACAGT---CTAGGAGCAGATCATGAAAAAGCTG-AGGTAATGAGTCTTGTGTGACAGGTGGACAGAGATGTTCCAGTTTGGGAGGTAAAAAGAAATCTACAGAGAATAATGCTACCCTAATAATGACAGATGGACTCATAATTCAGACAGAAGAAGTTCGACTTCACTTTTCTTTTCACTCAAATACTTAGTGTGTGTACTTTGCtgttttttgtgtttgcttttgtctGTTCATTGCCAACAACTGCAGTTTGAGGATGAGTACTTCTCGGCT--AGTGTCAGTGCCTAAGCACACTGTTCACAAGCCCAA--CTGGCATCAACTCTGAGCTGCTTCTGCACTTCCAGAGACAGAAGCATAGCTTAAAAGTACAAACACCACTAGTTTGGTCCGCAGGCTCTCCAGAAACAGTATGGGAGAAGTGCAATCCAGTCGTTGGCAAGCTTCTCAAGAGCATCTCAAGAGA--CTCCCTGTCAGTAAATTGTGACCCTCTGACAAGTCAGCTTACTGCCAGACTGTCT-------GGGATTGGGGAGAAACTGATACTGTTTACTCGTTCAGACTGGAAGAGTAACTT---ATTCATTGGCAAATA----CGCTTTGGAAAGACAAGACTAGTCGTTGTGGTTAATGCTTTCTGGTATTCTAGTAtt-----gttaatgattttattttttgaattaggATTTTCATTAagcaacaaacacacacacaccctaatcATGTGGCTATTCACTGACTCCAAAGTCCAGAACCATGAAATAATAGT-----------------TAGAATTTGTTTCTC--------TTCcagaa------aaaaagggaataatCTT--TCAGAGACAGTTTGCTGTAGTTTCTTCAATAAAACAA

a score=125275
s chr3            99805158 5912 + 160039680 [encoded data, 6393 characters]
s HiC_scaffold_1 109738315 5601 - 233722169 [encoded data, 6393 characters]

a score=62198
s chr3            99811171 4400 + 160039680 [encoded data, 4876 characters]
s HiC_scaffold_1 109745064 4256 - 233722169 [encoded data, 4876 characters]

a score=45351
s chr3            99817148 1858 + 160039680 AGTGTTTAACTAGTTGCCAAACAATAGAGTTCGAGACCAACAT----CTTCTTAGGCAGCTTTCGAACCAGCA---TGAGTGTTATAATGACAGGGGCCTAGAGGATG-----------CAGGAGAAAAGAGGTGGGTGTGGTCATTGCAGGAAGATAAAAAAGCATATGTTAAAGGTTAGAGCTCTA-----------AATAATGATCTGGTTTGGCTGTGTTTTACCCCCTCCCCTTAATTAAACAACAATTAAATTGTTTAATACATGTATGTTtcaagtattagaatactggtctctagtatggtattgttggaggtgataaagcccgtaataagtagagcctcattggaggtcattgaaggtacaggttccttctgccttctgaagagattaatggaattctCATGGGACTCCAGTTCGTTCTCATGAGAAAGTTGTTGTATGAGAGCGACCAATACC----TCAGTCTCTCTGGCTTTTTGCCTCTCGGCACAACCGCCCTCTTTCATGTATGTTCC----CAGCAAAATGCCATCACATCCATGATGTGAAGTAGCCAGGGGACCCCTCACTAGAGGTCAAGTCAATAAAGCCACCTGATGCTGGAATT-------------------------AATCT-----GCTGCTACA--------------------------------------------------------------------------TATAAACAGAAGTTGTTCATTGTTGCCATAGAGAGAGAGGCTTAGCCAGCTTAAGCAAAGATCAGATCGTGAGAATTCTTCTAGGTCAAGTTCAAAGTCTGGATTTATTCTCAGGGTCATGGAAAAGCATTGGCCCAACAGGGTAGCATAATAGTTACAAGCCTAAACCACAGAATAAGTTGGTAGTTTTAAAGACTGTGTCTATTCTCCCAATTGCCTGCCTTAGGAAGTATACAAAATTTTCAATATTTGGCTGCATTGT---GCCTACAAGGGTAGTAATTCTATGTGCTTCAAAAGAATAAGCAAAAG-------------TCTCTG--------CGACGCTTGCCTGCTGAGTCGTCATTCCTTGTAGAATGGGGGCGGGGCAGGGCAGGGGAGAGGCCATCCGAAGG-GTCCAG--ATGAAGAGCCAGGCAACTCTGCTGACTCCCGGTAAAAAATGATACCTTCCTCAGCTGGTGG--CCCAGACAG-CCATGCCTGTGCCTGGGGCAAGCACCGCTCTCAGCTCAGCTTTCACCCAGGCATCTCAGAGTCCACCTCCCC-TGCAGCGCAAGCCCCTGGTCCTCCTGTCCTTTGATTTTGTTCAGAAAACATACAGCTCAGCAAAGCCCACTGCTT--GGCATCCTTCAGCTCTCTGACCCTGCAGGGGTTGGGGGACTTCCTGGCTGACAATGACTCCCCTACCCGGCTTCCCCCCACCCCCCATGTACATGGCTGTCATGCTTCTTTTCTTCCTCTTGCTCAGTCATTTGCTCCCTGTCACTGGCTCAGGAATCGGGCTTTCCCCGATGAGGCAGAGATGAGCTTTCCGAATTGTGTTTATTTGTTGGCGCTCTGGTGTGAAAGCGCTCTCCATCAACTGCATATTAATCTTGTCACCAGTG-TGTATCTGTTTTCCTCTGCCTCTGTCCCCTGGCCTAA-TTTATGGCTTGCCTTTCCTTTGCTTCCTATTGTCACAATGACAGGGA--------------GTCCTCAGGCCCCAGCCAAACACAAGACCTGTCTTTTCAAGATGAACTGCTGTGAGGTACAAAATTCCTACAGTTTGCTTGGCAGGGCTAAATTTAGAGCAGACCTTCTCCAGTTGGTTCTGGGCCACCAAGACAAGTAGGAATGATGTCCTACATGTGCTACCTGCTGTGTTGGGTCCTATCAACAAACAGAAGTA---GGAAATCTGGCCCGGTCTTCCAGTGGAAATGGAGCATGGAATGACTGGTAAACAAGGTGGTCACATGTGCAT----CTGAATTGTCAAACCACAGATACC--ATAGCACAGA
s HiC_scaffold_1 109749910 1903 - 233722169 AGTATTCAACTAGTTACCAAGAAATAGGTCATAAAACTGACATACCTCACTTCAGGTAGCTTCTCATCCAGCAGGATAAATATTACTTTGGGAAAGGCCTACAGAGTGGAATGTTACATTAAGAGAAAAGAGGCACATGGAGGTATTCtaggaagaagaaagagcaaaCGTAAGAGATCAGTACCCCAGTGTGACAGTCATTGTTGTTATAATTTGGGCATGACTTTTCCTCCA--------------------------------------AGGTTTCATGTAGTAGAAGGTTGGTGCCTGAGGTGGTGAAGTGAGAACTGGTGGAAACTTCACGAGGTAAAGCCTCCTGGAAGGTAGTTGGAG-----------TGTTGCTCTCAGAAGAGACTAGCATAGTTCTCATGGGACTGTAGTTACTTCTCAAGAGAAAGTTGCTATGTAAGAATGAGTTGGGCCCTCCTCAGTCTCTCTaatcttatttctatc-------tcttcctATTGTATATGGATTCCATTTCACTATGAGGGTATCTCA--CACAATGTGGTATAACCAAGGAAGCCAAATCTAAAGACCAAGCCAATGCGACCACACAATCTTGGACTtccagttttcaaaataagagTCTATAAATCTCTTTTGCTGATACAATAGCCAGCTTCCGTTACTTAATACCCAGCCTTGGGTACCTGGTTGTACCAATGGAAAAAATCTAATAAACTTCCATAATCAGAAGAAGTACAGTGTTGTTATAGAGAAG-----CTAGCCAGCT-AAGCAAA-ATCagattataa-aattttcttaggTCAAGCTCAAAGTCTTTTTTTGTGATTAGAGTCA--GGAAATCACTGGTGAAACAGTATAGCATAATGGTtaagagttttaatttttaaaccagCTCCTGCatttgaaaactgtattt----------ttacttttattctgaaCCATACGAAATCCCCAGTATCTCATCATCTTTTCTTACATACAAATATGTCAGTTTCATGTGGTTCAAACTAATACATGGAAGAAGAATCAGTTCTTCTTTGTACTGTAACTACTGGAGTCTGTTGAGGTCTCTCTCATTACAG-------------CAGGGAGCAACAGCACCCATCTGAAGGAGGCCAGCCACAAAAGGCCAGGCAGTTCTGTTTACTTCTG-TCAGAAATGAAGGCTGCTTCAGCTGGCACACCCCAGGCAGGTCATGTCCAGGCTTCTGGAAAGTGCTGATCTCAACCCAGTTTTCATCCAGGCTCCTCAGAGTCCAAATCCCCATCCAATGCCTACCCCTGTTTCTCCTGTCCCTT-CTTTTGGACAGAAAA-ATGTAACTCAG----GCCAGCTGCTTATGTTATCCT-CAGCTATCTGATCTTGC------TGGAGGAATTCCTGGCAAACAG--------------GGCTTC------------ATGCACATGCTgggc--tctctttttctttctcttg----atcaTTTGCTCCCTTTCTTTGGCTCAATAATCTGCCTCTGCT-GGTAAGGCAGGGATGAGCTTTCTGAATTGTGTTTATTTGTTGGCGCTCTGGTGTGAAAGCACTCCCCGTCAACTGCATATTATTCTTGTCAGCAGTTCTGTATCTATTTTCC-CCGCCTCCATCCCCTGGTCTAATTTTATGGCTTTCCTATCCATTCCTTCCTATTGTCACAACGGCTGGGAAAGCTCTGTCACGGGTTCTCAGGTCTTCACCAGGCACAAGATCTATCCTTATAGGATAAACTACACAGTGATGCAAAA-TCCTCCAATTTGTTCAGCAAGACTAAATTTAGAACCGGCCTTGTCTAGTTGATTCTGTGCCATCCATCCAAGT------------CTTTAT-TGCTAACTG-TGCCCTTAGCACTATCCAGAAATAAAAGGACAGGGAAGCCTGTCATAATCTTCGAGAAGAGAAGGTGTTTTGAACGAATGACAAATAGTTTAGTCAGAAATGTATTTAACTTAGTTTCTGGACCATAGTCATCAAACAGCACAGA

a score=22227
s chr3            99823327 1319 + 160039680 GGTGCATTTTGTTAATCCCCACCACTGCGTGTCAGGGATAACTGATCTATGACTAAAAATAGTGTGAGGACAGCAATAGTAGCCATTTGGGGCTGACCTGAGGACACAGTGGAAAACTTGACAACAACACAGGAGAAGCTTCCTGGCCCAAGGCGCCAGGCTCAAGGGCGAGAGGTCAGGTTCATGTGCTGGGGAAATGTGATTGACAGCTCACCTCCCA-GAGTGAGTTTCAGTGGTGGTAATCTTCTAGTGCTGTTGGGCACCTTCTGAGTGATGTGGAAAGAAGTAAGACCTAGAGGTCCCATGGTATAGGTCATGGTTTTTCCCTAG----------------CATGAGTGACATTAAAGAGAGCTGTGC-AAATCGAGTAAAAACAAGTCTGCTCATTCCACTAACTTCAGTCGGAGTTTCGTCTCTAG------------AACTGGGAAAGCATTTGAGCCCACAGAGAGTAG---GTCCAAGCCACAGG-GGGCTCTCTGGATGGAAGGGGAGAAAAGAAGGGGGCAGAGAGAATCCTCAAG--GACATTTACCAATTGTCCAAATTACTTGGGTGTAGTTAGTGGCATTGGGTATTTCTGTATCCTAAGAATATGCCTACCACCAAAGATGACCTTTTAGCATCATGGGCCTTTTGAGTC-CCGGTTTTTAC-CCTATGCAGCCTTTACATGCCTACTTTGTACTGGATACTGTGCAAAAGATCATTCTAAAGTCTGCCTTCAACAATCCTTAGAATGATCTCTTTACTCATCttgttctatgaacatgaggctttgcctgtgtgtatgtctatgcaccacttgtatgcttaaagtttgctaaatcagaagagggcatcagatcccctggaactagagttacagaagagtgtgagccacctttgggaaccaagacctgactcctggtccattggaagagcaaaagtacagccttaactgctgaaacatctgtccagcccTGTTAGAAATGAGACCTTGCCTAAAGTACATTTAGTAGAGGAGAAACTGAAG--GAACATTACCAGGCATTCTTGGAAAGGGGGCTCCATGTCACATATCATTAGAGTG-------GTGACCACAACCCAGAGTGACATGGACATTTTCCTTATTTCCAACAGAGTTCTGTACATTCTTGACAAAGACT-AGGCTCTCATTTAATATATCAGAATATATAGTTCTGGGTTCTTGAACAAAGTATTAAGTAGAAATTTCTGTCATAGTACCTTGCCCTTAGTCTCAGGCCATGAGTCTTATA----ACTATTATAGCTTACTTTTAAAAATTTCACATTTAATCAAATTAAAAGCATATATTTCTATTAGCAGTCAAGTATCAAG
s HiC_scaffold_1 109757226 1068 - 233722169 GGTGCATTTTGTTAATCCGCATCACTGTGTGTCAGG-ATAACTGATCTACATCTAAAA-TAGTGAGAGGACAGCAAT-GCAGCCATTTGGAGCTGAACTGAGGACACAGTGGAAA-CTTGACAACAGCACAGTAGAACCTTCCTGGCCCAAGGCCACAGGCTCAAGGGCGAGAGGTCAGATTCATCTGCT-GGGAAGCGTGATTGACAGCTCCCCACCCAGGAGTGAGTTTCAATGGTGATGGTCTTTCACTACTATTGAACTCCTACAGAGTGAAGGGTAAAGCGGT-----CCTGGGATGCAATGGTACAGGACATAGCTTTtccttggaaaaaaaaatcctacaaataAGTGATACTCACAAgggatatataaaataaaataaaaacagctct--TCATTTCGTGGATTTCTCTCTGAAACT-GTCTGCAGCACACCCACAGTACCAGGAAAAGAAATCTATCCTGCAGTCACAAGCTCATCTTTGTCTCTGGTATGTGCTTTGGGtgggaggaagaaaataaaagggtcAGAAtgaa-cctcaaactcacagttacCAGTTTG---------TTTGATCCAGGTAGTG------------------TCCTAAGGAAAATTCTGCCACCAAAA-----CTTTTAAA------------TTGAGTCATTGAATTTTACTTCTACATAATTACCAC-TGCATAATCTATGCCAGATACTTTTCagagcaatttttaaaagaatgtcttAAACACTTGTTATAGT------------------------------------------------------------------------------TTTGTTAA------------------------------------------------------------------CAAG----------------------------------------------------------------------------------TTGCCCAAAGTGCAACTAATAAAAAAACTAATTATGCAAAAAATTTCCAGGCAGTCTCAAGAAAGAGTC-ACATGCTACACACCATTATAGTGGCAATTAGTGACCCTAACACAAAGTCTAATAGGAACACTCCATATCCTATTCAGAGTTGCAAACATTATTGATAATAACCAAGACAGTCATTTCAT-TCTCAAAATACGTAATTCTTGGCACTTGAACAAAGAATTCACT-GAACTTTCTCCTCTCTCACC--------AGGCTCAGGCTACAGATCTGATAGACTACCATAATAGTGTAC-ataaacaaattcaaattcaattaaatgaaaa------atttgaattaCTAGCCAAACACAAAG

a score=34799
s chr3            99826827 2062 + 160039680 CCACCCCATCCCCCCTTTTTTTGCTTCATTTTCC-------CCCCATACCTCCTAGCATTCTATAAAAGTTAATTCATCTT--TTTATCTCAGTGGCAACTTCCACAGTGCTGAGACTTTTTTTTTTTTTTTGGTCTAGTTTTCTTACTAGTTTATCCACGAAGCCTAGAAAACTAACAGCACATAGTGGTTTATAGTTCTAAGGTCCCA--GTGGGAAAAGTTGTAGAATGTTCTGCTGCCCATGGTTCA---TCTATGATGATACGCAGACTCACGGTTTTAGACAAGAAGGGCATAGGGGAATGGGATGAGAGTTATGGCCCACTCATGGTCCAAGT---------------TCATCCTCTA-AACCTAAACACACCA----TGTCCATATTTATAAAGATTGGCAAAGGAATTGCTGCTATTTCCATAAACTTGCCTTTCTAGA--CTCTTGCTGCATCTCTAC-CTGAATCCCTAAAGCTTTGGTCTGATTTTCCTCTTTCCAACTCTTTTCAGGTTTCATTGCTCATTCCC-CTTCCTTATAGGTGTAGACATCTCCAAGAGGCAGGCACCACATCAGTGAGTTTTATAAAATAGAGACACATGTTAATTATGATAGTAAGAAAGTGAATA----GATACAAT-----gccaggagagatggctctgcgtg---caagtgcacgtgcctcccaacattctgacctgagtgtagtgtaaggagagaaatgacttctaaaagctgtactctgacatgcccatggcttgcacacaataaacaa---------------------------------acaaacaaacaaacaaacaTTTTTAA-------AGAGTTTTGGTGGAGACCTTTTAACAATTGTGCA--GAAAAATACGATTACCTTTACCAGGGACATAATTCTCATCCATGAGGGAAAGCCCGGTTGCCTCAC----CAATCTTTCCTTTTATGCTTCCTCTTTGGTGTGGAAGAATGAAGAGCTTTGAGATGTGTGTTGGCAGTTTGTGATGGGATGCAAGTTGTTCTTGAATGATGAGAAAACAGAGGGATTTATTTTCCTAAAACATGGAGCGGA-TTTTGGCTGATCTATCTAATTCCGACAATGAGTGAGTGAAATGGCCAGACCT-----CACAAGTCAGCCTCTCGCTTAGAAA-CTCAGATGAAGCAGCCAAGCACTCACGGCCCTTCAAGTTTCCATCACACTGCTGCTACACAATGATATCATTTATTCATCTGTGGTCAATTAAATCTCAGCACACTGTAAGTGCATCGGCAGGTTCCATTTCCATG--GGTGGCACCAACGATGT-CCTTCCAAACTCAGTTTACCCATTTCCCTTC---ACTATTAAAGGGCACAGAGGAGCCAAG-------------TTTGTACACACAGTGCATGAAAAGGGGGGGGGCATTTTAAAGCTCTGAACAATGTCAAATTGTGTTTGCCTGTCAACAAAATCGGTCCCAGAGAAAGGCCCATCAGAACATGTCAGCACTCCATATGAGAGATCTGTCAGCTGCCCAAAATGAAAAGGAAGGATGGAAATTCCTCTAAAAATAGAACTTTACATCTTCTTAGG-GATTTCCATCTGGAAAAGCTCAAAACATTTGACTACTT-AATTATATATCTGTAATTATGTTTCTGCACTCGGTTCCACTGAAAG--GACACCAAAGCCTTCGTGATTCCCTTATA-CAATCCTG--------------AGTGTAATAGGACGATGAAATGGAAGCTGACAGTGAAACTCtgtattcctcagaattctccagagacacaaaacccttag----------------------catgcatgtgcacacattcatgtgatttagcataaagaatcgcttcccacaatttaggagactaagaagccacatattgtactg----------gagaccccagaatgccagtggtatacctctgatattcagagagtc-------taagttcctgtcaagggcagaggaatgcagatgccctagctctggctgttaggcaaagagcaaaattt---ctctgcctttatttcttgtttgattcaggctctcaatagattaaataaagcccaggcatatagaaaggaattgcctgttttacccagtccaacgatccaaatgttaatctcgtccagaaatacatttagacacatttagaaatagtgtctta-tttgggtacctaatgtcc
s HiC_scaffold_1 109759860 2134 - 233722169 CCACCTTATTCCtcctttct--gctttatttttctatagCACATAACACCTTCTATAATACTATAAAAATGCATTGATTTTACCTTGTCTGAATGATAGCTTCCACCAGGATAATAATTTGTCTCTATTT--------GTTCTCT----ATTGCATCTCCAAAACTTA-----CTTACAAAGCAC---------TAGTTTCAAGGGTCTTTTGTGGAGAAATATGTGGGATGT----CTACCTTCAGGACAGAATCTGTGA------GCATACAAACAATTTTCG----GAGGAGGAAAGGGG----TGAAGAGAG--ATCATTCACCAATGATTTAATGATAGAGACTGAGCCATCTGCCTCTACAACCCAAACTCACAAACATTGACCATgtttttaagctttgaaagagGAACT-CTGCTACCTTAGTGAACAGATTTTTCTAGATTCTCCCACTACATTTCTTCTCTGAATGTCTACCTCTCTCATGCAATT--CCCTCTCCCAGATCTTTCCATATTTAGTTGCCCATTCCTTCATCCTTCACTTTTTACACAGTACCAAGAGTCGGTCTCTTTCCTAATAAGTTTGCCAAATGATAGGCACAAGTAAACTGTTACTTTGAG---GTTAACATCTTGTTAAAATCTTTTTCAGGGACAGACTAtcttatttgagacaag-------gtctc-----actctg---------tagt-tcagactagacttgaactc----------actatg---taccccaggtttgtctcaaattcacaattttcctgcctcagtttctctagtTGTGTGATTACAGGCTTGCATGATCACATTTCTCCTCTTGTTAAACTCTTGATGGACAA-TTATGGGAATTATGTAAAGGAAACTATGTTGATTTGTGT-AGGGAAAGAATCTTCATATA---GGGAAACTTTATTTGTTTGATAACTCAGTCTTTTATTTCATGATCCCTATATGGCATGGAAGCAAGAAAAGCTTTGAAGTGGATATGAGCAACTTATTATAGGGT-CCAGTTGCTCTTAAATGACAACTAAAC-TAAAGATTTGAATTCCAAAGACATATAACAGAGCCCTTGTTGAGCCATTGAATTCTGATATCAGGTGACTAGAAAATCTAGACTTTCAATCATAGGTTAACCATCACCTCAGTCATCTTGGATGCACCATTTAAACACTCATTGCTGTGTAATTTCCAATCACAGAATGGTTGCAAAGTGTTATAATTTATGCATTTTGGGTCAATTAAATTATGGCATGTCATTGGTGCAATGATAGGTTAAATTTCCAGGTTATTGGATTTAATGATATATCTTCAAAATTCAGATTACTTGTCATGCTTCTAAAAGACGAAAAGGCTTAAGGAAGCCAAGATGAccaatttctttaatattcttattGTCTGGACAAAAGCAG----TTTCATAGCTCCAAA-AAGGTTAAATTTTGTTTGTCTGTGAGCAAAATTTATCCCAACAAAAGGCACATCA-AATGTGTCAACACTCTATTTTAGAGGACTGTTATCTGcctgaaaagaagagaaaggat-gaAATCTGTCTACGAATGTTACTTTACATATTATTAGGCGAGTTCCATTTGGAAAATCTCAAAGCATTTGACTAATTCAATTACATATCTGTAATTCTGTTTTTGTCCTGTAATCTACAGGAAGAAGGAAGTAAACATTTACATACACCCTTACACCAAACGTGATAGCTGTTtgacaaatgtaataaaatgctAAAATGGC--TTGAATATGATATACTGTATTATGC-----TCTCCAGAGAAACAAAATCCATAGGACACagtcacatgtacacacacacacacacacacacacacatttgattTGGCATAAGACATTAACTGATATGATTATGAAAGCTGAGATATCCCACAGTCTCCAGGCTGcataatgaaaacacaaaaaatcagtagcataGCCCTTAGAAACAGAGGGTTAATAGCATAAATCTCAGTCAAGGGTAGGATAATATGAATATCTTAGATCATGCAGCcaggcaaaaaagaaaatttatgcttcctctttgttt-ttgttctattaAAGTCCCTGACAGATTGAGTGGTTCCCAGATCTTTGGGGAAG-ACAATCTGCTTTACTAAGTCTACCATCTCAAATTGTAATATCAATCAAAAACattctaatacatttttaaaaacaatgtttaaCCTTGGACACCGGACCTCC

a score=43009
s chr3            99834791 1838 + 160039680 TAGCTTTGAGTTACCATCCCTACAGCAAGCCTCTCTGTACATTTATCCTGTTCCTGG-CCTCAGGCAACCATGCTTATCCGTAACT-GTGAGTGGAAAATGGATGACATAACCATCCAATGGTGTCTATGGGA-TATTACAGGAGGATTAAAGTATTATCAACAAATCGAGAACTAGTACTGTTTTCTCCGCATGGGAGTGTTTTCAATTAATTTGTAATTAAATAAAGGAAGCAATTTACTGGGTCTTGGAAGAGTCAAGGCTGTGGAAG-TTTATCTCATCCGTCTCAGCTGTGCATTCCTTCTGTACCGGCTCATTGTTTAGATCACAGCTATGACACACAATCTGACCTATAGGAGAAACTCAATAAAACATCAATATTTTTCTTCCTTTAACCCATGCTGCTGTTGTGACTTAAGCAATCTGTCTGAAAGAGGCTCTGCCATGAGTCAATATCTCCTTCTCTAGCTTTGTGTGTCTTTCAGCTGTTCTCACCAGCAAGTCTGACCAGACTAGAAATAATCCCACTAGTTTTGTCTAGGGT----AGAAGATAAGTGGATGCC-TAGGTTC--AGTTGTTTAAAATGTCTGTATA-CCAAGATTTctaggcactgtgtcttggttgctatccacccatggtctgacataatttatccctcctgatcatcttgaaaagtgggtgctgttatc-acattttacaagaggagtaaattcagtttagaTGATGACTGCAGTGAGATTAATTCCTACTTCTGA--------------------TTTTCCACCAACACTGTCCAGATCTGGCCTGCACAGATCATGAAAAGTGAAGAGTGAAGACAAGACTGGTCTTTGCAAACAGCTGGAGAACACTGCTGTGACTTCATGGTAGGCCTTTCTTTGATCCATAAAGTGCTAATTGTCATCCAGTTATCTGCAAGTGTTGGACTATACTCTTATTTAGTAAGCAGATACTAAATAA-TGTTGTTGTTGATGATGATGATAACAGCAGAATAAATGCAAACTTTACAGATAGTGGGGTTTGAGGGAAATTTCTAATCCACTggttctcaacctgtgggtcatgaactctttggggtcagatgaccctttcactggggttcccttaagaacacggggaatatcagatatttacaatatgatttataacaataacaaaattacagttatgaaagagcaatgaaatacttttatggttggggtcaccactgtactgtattaaagggtcacagcattagaaaggttgagaaccactgCTCTAATCACTTTACATATATTAATCCACTAGAGTGATCATTATAATGGATTAATATATCTATATTAATCTATATGTCTGTCACTATACCCACTTCATATGTGGCAGGGGTGGATGAATTTCAGGGAGACGC-TTAACAAAGAAACTAATCTCTTTATCTAAGGACACACTCTGACATTTTTCTGTAGGATTAAATCTCAAAATT-AGAAAGAGAGCAGTTGTTTGCAATAGAGGTTTACAAAGTGAGTTGTTACTTGaaaatatt-aaatttataattataccttttattcataaa-aaattttgatattaatt--ttttttaaatCTCTACTATTTGCTAAGATCCTAGTTGATATAGCCCTCCTGCTCAACCTCAATGTCTGATGGTCACTTTTAATATGCA-AAAGTTCTAAGGTAAGAATGAGA---ATGCTAAAGACCTTGGCTGAGGGTAGTTGTAA-ACCCCCAGTACACTGTCAGCTGGCTGCAGTCTAATTGGGC---------TGGCATGTGCAGATTAAAATAGATACATTTATTAATATCTCAAGCAGCTCTTGTAAGGCTGGCAAAAGGTTTAAACAAATGACTCCTACAGAGGGACT
s HiC_scaffold_1 109790227 1567 - 233722169 TACCTTTGCTTTATGCTTCCAAAAGTGCACCTCTCTGTGTGTTTATCCTTTTCCTGAACCTCAGGCAGCCGTGTTTACCCAGACCGAGCAAGTGTAAAATTGATGACATAATCATGCAGTAGTGTCTACAGAACTATTACAGGAGGATTaggttattatcaacaaataggAAACTAATATTGTTTTATCAGCACGAGAGTGTTTTCAATTAATTTGTAATTAAATAAGGGAAGCAATTTTTTGGGTCTTGGAGGAGTCAAGGCTGTGGAAGGTTTATCTCATCCGCCTCAGCTGTGCATTCCTCGTGCACCGGCTCATTGTTTAGATCACAGCAGTGATACATGATCCGACCTATAGGAGTAATTCAATAGAAcatcaatatttttcttcctttaacccATGGTGCTGTGGTGACTTAAGAAAACTGTCTGGAACAGCCTCCATCCTGAGTCAAGAGCTATGCCTCGAGCTTTTCTGTTCTGTCAGAAATTACAACAAAC-AGCCTGCCTGTGTTAGAAATGCTCAAACTCATTTT-TCCAGggtggaaggaagaaaaatggatttcatgggtttaaaattattttaaatgtttctgcgTCTAGGTTTTCCAAGCAATATATTT---ACTCTTTCCACCCATGCTCTGATATAAT---TCCATCCCAATCATCCTGAAAAGTGGGCA-TGTAATCTTCATGTTATTGGATGAGCAAATTTGGTTGTGTTGGCAGTTAAGCCAGGAATAATAACTAGTTCCAAAGCATCCCCAGAGTCCAGGTTTTTCCACCTACACTATTAA--------CTGTAGGCTATGTGGACTGTGAAAAGTAAAAATGTGACTAGTATTCTTATCCAGCCCAAAGACACTGTAGGCGTCTCTTGGTGAGCCTTTCTTGTATTTCTAAAACCCCAGTTATCATCCAGGCACCCAAATGATTTGGCATAGATATATA---AGTAAATGAGTGCTAAATAACTGTAATTATT-------atagcaaca--agaacaaaatgtAACCTTACTGCTTACTAGATTCAAAGTATTCTTCTAA----------------------------------------------------------------------------------------------------ATGCCTTAAATCA--------------------AAAATGCTATGGGATAC---------------------------------------------------------------------------------------------------------------------------ATACCTATTATACTCT-------------------catttcagat----------------------aaagaaacacaGTGACAAAGGCATTAATCCGCTTACCAAAGGTTACAGTCTTACTTGTCCTGATAGAATTGGATCTCAGAATCAAGAAAGACAGGAATTATCTGTAATAGAGGTTTGCAAAGTATAATGTTAATAGAAAGtgttaaaatttatcattttatgtatTCCTCATGCATAAGTTTTGGTATTTACTAATCTTTAACATTTCCAATAATAATTAATAT--TGCTTGACCTAATATCCTGGCTCAATCTGAATGTCTGGCAATCATATCTAATATGCAGGAAGCTCTGAAG-AAGAATGGCATTCACCCTACACGTGTTG---GGGGGTGACTGCAATGCCCTCAGTACACTGTCAGTTGATAGTAGTTTACCTGAGTCTGGTATAGTTGCACAGGCAggttataatagctaaatt------tctCTCAATCTGGCCTCCTAAAATAGACTAGAGGCATTATTAAATGATTTCTGCACAGATACT

a score=39512
s chr3            99838167 2407 + 160039680 ctaggcttctaacatgctcataaaggagaccaaccatggcaggttctggaaataaaaaatggaaa-attccctgatctatccccacctgctttcataaaataataatacatcattgaaaGGAGA--CAGACTGACTTAATTCCCATTCTCTAAATATACACTGACTGAGCTGAGACATTTCTATATATTTATTATTACCACA----CTGTTTGTAATGACCAAATTTTGGCCTTTTTAGAATGGAGCTTGACCTCTGAACATTTTTGACTGCTTTAAGCCAAAGTACAAGCTCTTCCCTCT----AACTCCCAC------------------------AATGCTCCACACTTTTTTCACCCTTATGGTTTCACCTTCTTTGTGGCTG-TTTATTCTGCTTA-----TCCTGAAGTCA-----TCTTCCTGTCTACACTCCCTAACTTTCCCTGTCAAACAACACCTAACTCACAGTGGGGATCCAATGAATAAATGAATGACCTCAAGTTGTCTGTAGACCTCCCTTTACCACAGTGGTGTTAAAAGCTGATTAAAGCTGATGTTTTAAATTATTATTACTGAAAGAGATATCTAAGCTGCAGTGCATCTTTCTCTGCAGCTGCTTG--TATGTAGAACTACAATTTGCAGCTGGGGACGGCTGTGCCAGTTGGGAATAGGCTGAGATCTAGCCACATCTGCAGACTGAAAACACCCAGGCAAAGAAGAGGCTTTTCTGACTGGTAACTAATTTGGC-TATAAGTAGTTGTAGCCCTGGAAAGTTTATGCATATTTCTCAGGCTTCTGGGTGGGCTTTGGAGTGT--GTGCCACTTGTTAGCTGTAATCTGAAGAAATGCACTGGCCCCTTTTCTTGGTTCTGCCCCACCCCCACCCCCACACTGTAGAAGAGTGCTGAGTATCTGGGCTCT---------AGGGATCTCTGTACATAGTGACCCA---------CAGCATGGTGGG----CATGTTATAGCAAAGAATTATGACTTGTTTCTGTTGTGACCTCTT-------GTAGAATTTTAGAAAGAT-CCCCAATAGAAATATAATACAAATGTGATCCTTTTGAATGAGAAATTTAATGGCAAATAGAAA-TACATATACAAAATTAAGATGATAAATTTATA------AAAATGTTTGATTTAAAGCATGA----------ACACCATCTAtcctgtatatttgctgcagatttgattctaagttgtccagaaactggaataaaaaaaagagggtggggcagataatcagttccagaaaccatggtacctagaaga----------aaacaacatttgctcaagaggaacatctccctccctgagtcctaagactgagccccaagaaacttTGAAAATTTTGCTC--TACATTTGGAGAAGTTCCCTATATGCTACAGACATTCCAGTCTGTGGTTATATTGAAATATAAGagaaggctataagaaacacagccaaaaaaaaaggaaggaaggaaggaaggaaggaaggaaggaaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagggacggagggagggggagagagagagagagagagagagagagagagagagagagagagagagagagagaacaagccagccactgacccctaggctgaatgaaaagtctgatcatgggcagactctccCT-CAAGGAGAAACTGCTTTCATGATCTGTGCTGTCTTCTTGCTTCCTGCAACTTCAGTTCCAAGAGAATTTCTGGAGCTGTCACT----TCAG---------AAAGTTCCCAGGATGCAGGGAGCTGCAGGAGATGAGGAACCTATCTCTTCTTCTTCTTCAGTTGAAGTGGGTATATGGTAATAGAGTGGTA-TACTCACTCTTACTTCTGGGGCCAACTGGGTCCAAAGGCCTGGAGCCAGAGGGAGTGTCCAGAGATCAGGATGGATATTATAGGCCCCTGTGTGAACAGAATACACATTAACCAATGATGGGCAACCCAGAGTAGTGCTTCCATGTAACAGTGAAATCACTACCTCCATTGTGAGTTCCACCTACTAACTACCTACATCAGTGAGCTGTTGCATTGCATCTAAACTGGAGAGAAGGGGGTGCTGGTACACAGAAGAGCAGGTGTTTGTCTCAGATTTAAGGAGTCCATGGTCTATTAGAGCAGTGGAGA----TTGTCACAGCCACTAGAGTTATTCC-CTGTGTCTTACTTGG-GGCTTGCCTTCACACAGAATTTCCTTAGCTCTTTCAGACA-CCATGTGATGACCCATTTAAGGATCTCATTCTTGTTAGAAGATCCTAATCCCCATGTTCAAGGAGAAAGAGGAAATGGAAAC---------ACACTGGCTTTTTGTGGCCATGGCAGGACAGGTAGTAGAGAATGGTCAGAAATAAGGCTGGAAAGATGGCTGGGGCCAGCCTAAAGGGTAGTGAATGTAGTTATTACAGC-TTCACTCTGAG-AGGCTGAAGACCCACTTGGAGCTTTTGAGGAAAG
s HiC_scaffold_1 109795127 2208 - 233722169 CCAGACTTCTTGCATATTGCCAAATGAGACAAGCCATAGCAAATTCTAGGAATATAACAAAGAGGTATCCAAAAACCCATCTCAACC--------------AATAATCTTCcattgaaaagaaaaccagacGTATCTAATTACTGTTCTCCAAATGTACATTGCAT----TTAAACACTTCCATATCTTTGCTTTTACCACAGCCTTTATTTGCAGGCTctgaatttttcccattttaggaTATGGTTCAAAATCTTTGAAAGTCTGA-TATTTTAGGTAAGG-----AACTCTTCCCACTTCTCAATTCCCACCTCAGCTTGTATAGATTTATTTGCAGCACTTAATACGTTTC---ACCTTATATTTGTGCTATTTGTGTACTAGATTTACTTTGCTTAACTTTCCTTGAAGTCTCTGCTTTGCCATATTTGTATTCCTTAGACTTTCCTCCCAAACAATGCCTGACTTACCGTAAGAAGCCAATCAATGTATGAATAAAA-CAAGGTGTCTGGAGACCTCCAGCCACTgaagagatgttttaaaatgatGTCAGGT----TTTTAAAC-------------AGAGATAATCAAACTATAATGTATCTTTCTTCCCAGCTGCTGGCTTATGTGGTACTAAAGTCCACAGCTGGGGACAGCTGTGCCAGTTAGGAACTGGCTGAGATCTAACTACATCTGTAGAACAAAAACACCCAGCCAGGGGTGGAACTTGTCTTACTGATtgctaattttgcttttaaatagttGTAGCCCTGGGAAGTTTCTCCACATTTCTCAGGCTTCTGGGTGGGCTTCTGAGTATTAGTACCACTTGTTAGCTACAGTTTGAAGGAGCGTGTtggtcttttttctgtgtt----------------ccctCAGTAAAG-GGATTCCTGTATCTTTGGGCCCTTAaattttctggattctttgtagaTAGTGATTGGCATCATAATCAACATGGTAGGAACACCTGTTATAGCAATGGGTTATTATTTGTTtatac----atttctttatttcaaaagaattttagaaagatatttttaaagaaatatagcaCCAA-GCTATTTTGTAAAGTTAAAAA-CTAATAG-AAATAGAAAGTAATCACAGAATATTAAGATGATTAATAATTAACATAGAAAATGATTACTGCAAAAGATGATGGTTGTAAGATACTGTATTTGGTGCAGATGGACTGCAAATCTAATCCAAATCTTCCTAGAAACTAG--TCAAAAAAG------GGGGAAGAGAATCAATTACAGGAATCATACTTtctgtaaaatgatttttttgaaaACCTGTTGTTCTAGGGAATCATCTCCCTCCCTCTGcatta---------------------caaaaattttattctgTATATCCTCAGAAGATTCCTGCATGATACAAAGA---------GCAATAATACAGAAACACAAGAA-----TGTAGGAAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGCTGAACCCTGGGCCTGAT-ACAAATCTGATGATAGATAGAATATGCATGGGATGAGGAATTGCTGGGGAGATCAGagcttttcctttgtttcttggaACTTCAGTCCCAACAAATGTGTCTGAGCTACTTCTGATGTCAGCCAGAAACAAAGGTTGCTAGGAGTCTGAGAACTACAGACTATGCTGAAGAcatctctatttcttcttc---tgtagTTGGAATGTGCTAATCCAGTGAAACTGTTTTGCCCTGATGCTGGAGC---------CTCACGATACGGAATCAAGAGGTTGGTGCAAAggacaaaacaaagagaagtgACCTCTGTGGATA---AATTCATATCTACCAAAGATGAGTATAACAGAACACACTCTTCATTTAATAACAAAAGTATTACTGCCCCAGAAAACTTTACC--------------------AAGTTCTTATGCTATATATAAATGGGAAAG--GAAGGTGATGTTGCATAGAACCTGATGGGTATGTGCAA---CTGGAAAGCCCGCAGTGTacaggtgcagtggagacccttGGTCAAAGCCATTGGAGTCATTCAGCCTTGCCTAAGGTGGCGGCTTGCTTTGACGCAGGCTTCCCACAACTCTCTCAGAAATTCATATAATATTCCACAT-----CCACATTCTTGT----------CACTTCCCCTGTATATATAGAAACAGGAGGCAAAATCCAGAGGTCTCAGCCTGATTTTTATCGTGGTAGCAAAGTTAGGAAGAGAAAATAGTAAGAAACAAGGTAGGAGAGACAGCTAGGACCAGACTATACAGTTCTACAGACTACTGTAAGGACTTTCATTCTGAATGGGCTGTGAAATCATGGGAGAATTTTAAGAACAG

a score=113326
s chr3            99840571 4492 + 160039680 [encoded data, 4723 characters]
s HiC_scaffold_1 109797701 4427 - 233722169 [encoded data, 4723 characters]

a score=14400
s chr3            99846821 374 + 160039680 AGGAAAGCACTAGACATGGACCATGCAGGAGATGCCAGGCTAGACAAAGCAAACTCCAGTGTGTGCAGTCAGCGAACACATGAATAATATTAAGAGATTACAGAAAACTGGGAGGAAAAGAATGAAATGGGATTCAGCTTG-GAAAATGCCAAGTAATGTATTTGAGAGGAAGTAACCAGAAACACAAAGGCTTGCAGTGTTCTGTG-----------AACTGGGGTTG----CCTGCCAGTGGGTGGAAGATGCCTGATCCGAGCA-CCCCCTCAAATGCCACACTTAGGATTTTGAGTTCAAATCCCCCTTTGAATGTATCAAGCGAGAAAGCAA---------GGAGGCAGGAAGACACA-GACTTGAAATTAGGAGATTACAAATGATCAAACTCAg
s HiC_scaffold_1 109802597 397 - 233722169 AAAAAAGTACTA---ATGGAGTGTGCAGAAGATGCCATGCAAGAAAAAGCAGACCCCAGTATGAGCAGGGAGTGAACACATGAATGATATTAAAAGATTATAGAAAGATGGGtaggaaagaatgaaataagatTTAGCTTGAAAAAATGTGAAGTAATGCATTCTGGAGCAAGCAACCAGAAACACATGAGTTTGCAATGCTCTGTGGTGACAGAATTAGCTGGAGGCAGAATCGCGCCAGGGAAAGGAAGATGGGTGATCTCAGCATCCCCCAGAGAAACTACACGTAAAA-GCTGAGTTCAGTGTCCCCTTTGAAAATAagtaatgagaaagaaaaatggaaacggGATCAGAAGAGCACATTGCTAattattaggaaattaaaaattattgactTGAG

a score=69380
s chr3            99848982 4432 + 160039680 [encoded data, 4981 characters]
s HiC_scaffold_1 109803589 4475 - 233722169 [encoded data, 4981 characters]

a score=87401
s chr3            99854013 2918 + 160039680 ATTTTTAAATACCCATCTTATTGCTGAGTACCTGATAGAGGCACTGTTGGAT---------------CCAGGAAGGAGTGAGGCTCCATCCTATGCACTCCTTCAGCGTTCTTGGG---CTCCTGAGTATCAGCCCT--CCTAGTGGCTTCTAAGCA-GCTGCCTTACAAATCCATTTCCTCAAACTGTGCTTCTCTCCAGAGCAGGACCAGGTATCCTTTACCTTTGACACCCTCCTTATTTGCACAGTTTACAACCCTCTCCTACTCATCTAAGCTTAAAGCCAGAGCATATCAAGA-TACTCAAAGAACGGGGATGGAG--ACAAGAAGAATGCTAAGTAGCTAACCCAAAAGACACAGAGAAATTAGATTTCAGCATTCTGACATTTATTACAGTGCACAGGGCTAAGCTATGCTGCCGCCATGCTTCCGTGATGGTGCACAAAGAGTGACGGGTAACTTTTAAGGCTCATTTGACTACCAAAAAAGTGAAGAACACAGGGCCCAGGCCAGTTCACTCTTAAGTCTGATTAGATGAAGGCTTATGGGCTCCATCTAAGCTTTAAATCGGGATCATTTTCAGGTCTAATGGAAATTACACGGTGGCTTTGGCTTCACAGGGAAGGAACTTGGGGCTAATCAGCCCTGGGAATGCCACCATCTGAGATACCAAGGC-AAAGCAAAGGAATGCCATCGATTA--AGTCTCCTATCCAGAATGTTCCAAGCCTGTGAG------GAGCTGAGCTGGGACTGGAATCCCAGCCACAGGCTTAATTGCTTTGCAAGGGGCCACAGCTGTTGCTGCAAGGAAGCTCAGGACCAAATCCTGCTTTCTTACTTTCAGCTTTTTGCTGAGCTTGCTAGGGGCTGGCTTTTTTGAGCCACCTGATGCCCACGGCTGGGGAAAATCGTTATTTTTCCAATGCCCCATGtcttgtctctgctttt------cattatatgttcagcactcagggtaatgcctggaatgtggttcttgctc---aataagtgtctgattaattaaataaGCCATCAAAATTGAGGTTTTGGAGGGAAAGAGAGTTCCCTGGTACA------------------ACGTTTTCAACCAAATTTCTCTTTAGTTATTT-------AGGTAGATGTGTAAAGACACCGATATAGTATG---GACATTTTAATTTTGTCTAGCTTCTGCTTCCATCTACATGAAATTTTTC-ATGCATATTCTATGAACACGTCAACTTTTTTTTATGACTTCTTTCCCCTC----CTTTGATGACAACTATTCCCAGAATAATGAATGACCTAGCCCACGTGCACAAAGCCCTCTGCCTTTGAAACAGTGAAAATAACCTAATGGCCAGCAGAACCGTGGCATCTATGGACTTTGCCCGAAGTCGGGACCAT-GGGATAGAATCTGGAGAGTTCCTGGCTTAAGTGGTGTTAAGCAGTGTCTGTGATTAGAAAATGAAATGAAATAGAATCCCCTCATGGATTCGAGAATAGCCCAGCGCTGTCCTAAAATAAACAGGTCGAAGGAGCATGGGTGGCAGTCCCTTAATCCTTAAACCTGCTCTCCTGACTTTATGTCACTTAGGCTTCCAAACACTTGTCCCTGCCTTCTCTCTGTAGCCTTAGACCCAAGCATGCCCCAAGCCTCTC--CCCTAAGTGTTAGCT-ATCCAATATGCTCAACTCCTTTGAGAGCCAGTAAGAAGGTTAGAAAAGCTCTGGTCCATGATG-AAATATTTTATAGCTTCGA-----------------------------CTATGCATTTAGAGACGGGGATTGTCCTTTCATTGTG-----AAAACATATTTTTTAATTATAATCCATA---TACGCTTTTACTTTGATCCTTAGTAACAATGCGAGAGTATTTATATTTACTGTTCT-TTTTAAATACCCTACCCAGAACAAGGAAAACGACTGGTTTCTCCAAGTGCT----------GTGGTAAC----------CCCAGAGCTTCCCCAGCTTTAATGTCGTGCCTAGTTGAAGAAA-AGGAACATCCCCAAA-----------CAAAACCTCACAGTCGCAAAGCCCCGAGTCACTAACAAAGCACAGCATTAGCCTACCTGTCATTGAACTTCACAATAGTTATATCGTGCCT--------------------GATGGTGTAA-----CATAAAGATAGAGAAGGTCTTTTACCTAAGCATGCAT--------------TATCATAAGTGT----ATTCAAAGGGAG---CCATGTCTTCGTGAG-ACAGCAGCCTGGAGCTCCAGGTTGAAGCAGCGCCTTACCTGAGCTCACAGAGGGCTCAGTAGCATGGAGGAAGAGATTTCAGAGC-AAATGCTAGAGTTTTG---TTGGCCTT-AAGACAATGGAAAGCCATTATTTAATGCCTAGTTTTTATC----TTCAAGTCTGAGACTA--ACACTCCAGGGCTCTGA---CCTGTATTTAGTATTGGGTA------AAATATTTGTTTAAAACTGCCTCCTGCCTCTCACAGAGCCTCACACATGAAGTGCAAAACCAATGACTCCAGCCA----TGGTGATTAAAGGCTCCTTACTAC-CTTTTACAAGGATTGGGTGATTAATGTTCATAGCCTTGGCCTACTTGCAGCTGGGAGAAGGAGCTC-CACCTCCTCCATGCCTGCTTCCCAGTGGTGCTGGTCCCCACGGGGGCTACTCCACAGAACCACTGGGTAGGGGACTTGGACCCAGGCGAGTCAGTCAGGGTAGAGTTGCTGTGCCAGTTTCATCCTCGCTGTGACTTAATTTAGGACAGCTGAGGACCACCTGGATACAGGAAAGCAAATTGACTCCTGTCTTCAAAGGGGAGGAAAGGGGAGGGAGGCTTGGGCATGGTTAACTTCAGTCTGTTTCAACTGCCCTTGCCTGGGCTGTTGTGTAGCGCTGGCAGCTTCCTCTC--CTGTGAAAACTAGGTGTCCTGGACAGGTAACAGATGGATTTTTCAGGACACCTGGCAAAGGAACCACCCATGGAAATTGCTTCATTTTTCCTGCTGAAAGC---TGTTTAAAACCAAATATTACACTTATATCTTAGCTCTCATAAAATAT
s HiC_scaffold_1 109808041 3002 - 233722169 ATTCCTCAAAATTTAGCTCATTGATAAGTACCTGTGGGATGCATTGCTGAATTCCCCTATGTAGTCTCCCTGAAGGAGTGGGTCTGCCTCCTGC---CTGTTTCTGAGCACCTAAGGCATACCTCAGCCACAGGCCTACCCCACGGTGTTCCAGGTATACTGCTTTACAAGCTCATTTCTTCAGACTGTACTCATTTTTGGTGCA----CAGGTGTTCTTTATC----------------------CAGTTTG-----------------TCCAGGTCTAAAGCCTG-GTGCatcaaaaatactgaaagaacaGAGTAGGAGTAAGAGAAGGAAAGCTAAAGGGCTTTCTCAAATT-CAAACAATGATTCAGTATCAGATTTCTGACAGC----GCAGTACTTGATTCTAAACTAGGCTGTCATCGTTCTTATTTGATGGTCCCCAAAGAGTGACACA-AATTTTTCAGAATCATTTTACTACTAAAGAAATGAAGAACATAGAGCTCAGGCCAGTTAATTCTTAAGTATGATTAGACGATGGCTTATGAGCTCCATCTAAGCTTTAAATCAGTATCATTTTCAGGTCTAATGGAAATTACATGGTGGCTTTGGCTTCACAGGGAAGGAACTTGGAGCTAATCAGCCTCGGGAATGCCACCATCTGAGATGCCAAGGCAAAAACAAAGGAATGTTATCGATTAAGAGTCTCCTGTCAAGATTGTTCCAAGGTTGTGATCCTGCCTAGATGAAATGGGATTGGAATCCTAGCCACAGGCTTAATTGCTTTGCAAGGGGCCACAGCTGTTGCTGTGAGGAAACTCAGGGAAAAAGTCGGTTTTCTTATTTTCAGCGTTTTGCCCATAGTCTTAGAGATTG---TTATGGAGCTGCCCAATACCCAT-------GCAAATGGTTACTTTTTTAGTATCCTGTctcttacctgtttttttttcccccactatATGGCCAGCACTGAATTTGGTGCCTATAAGATAGTACTTGCTCTGAAATGTGTGTTAGATTAATTAAGTAAGCCACCAAAAGTCAAATTTAATAGGAAATGGTAGATCTTGAGCGTAGAAGAGAGATGTCTCTTCACTATTTGAAACAAGATTCTTTCTGGTCCTTTCTTTAGAATATACAAACATAAAGAAAGATATATAGCatgcaaaacattttaatttt-tccagcgTATGACTCTATCTACATCATATTTTCCTATCCATATTCCATGATCAAATAAACTCTCTCTTCAagcctttttctcctctctgtttTAATGACAACCAATCCCTGAATAACAAAGGATTTA------------CAAACTCTTGGCCTTTCAAATAACTACAATGACCTAAGACCCAAAAGAACAGTGGCATGTATGGACTTTGCCAGGAGTTGGACCCATGGGGGTAAAATCTACAGAGTTATTGGCTTAAGTAGTGTTAAGTAGCCCCTGTGATtggaaaatgagatgaaatcAAATCCCCTCATAGAATCAAGACTATTCGGGccttattctaaaataaataggCCAAAAAAGCATAGATGACAGTGGCTTAGTCCTC----------------CTTTACTTCACTTAGGTTTCCAAACATCTGTCTCTGCCTTCTATCTGTAGCCTTAGACTCAAACACATCTTAAAACTTTCTGCCCTTAATGTTcactgatctgatgaact----tctttTAACACTCTGTAAAGCAGTAAG--AAGCTCTggtttataatgaaaatattttatggctTTGATCCTTGGTTGTTAAAGGATTTCTACCACTTTATAAATTTGAAAGTTGGAGTCAGTTTTTCTTCATgaacaaaaaaaatgtatctgtatTATAATACGTAAGTAACATTTTTACCTTCACTtcaaaaaacaatacaagagtat-----CATACAGCTCTCCTCTAAATGTTCTGCTTGGAGTAAAGCAAGTGGCTGGTTTTGCTTGGTTCTGCTGAGTGGGGTGGTAACTCCTATGATTTCCAATGCCTTCCTGTATTTAATTTAgtggaaatttgaaaaaatagatatattcataaaaatgtaGCCTCCAAAATGTC----TGATACAACACTTTATAACTTACAAAA-GTATCATTAA-CTCTTTGCCCTTGATCCTCAAGACCATCATATGTCGTTTAAGAGAAATAAGACCCAAGCAAGGGTTCAAGTgagcaggaagtgaaaagattcCTTCCACAGACTTTTTCATAGTTGATGCTCATATACTATGAGTGTCATAGCCCAAAGAGAATCTCCAAGTTTTTGGTAGCATCAGAGTGTAGaggaaaaggatgaaataaagc------------------AAGCAAACTATTTAAGGAGAAGTGTTTGCACCGTGAAATGTATGATTTTCAGATTTGACCTCAAAGGCGATGGAAAACCATTACTCAAGGGCCATATTTCACCATGTTCCAAATGTGAGATCAGGAAACAGCAGGGCCCTAACTTCCTATGTCTAGTTTtgcatattgtgtaaatattCATCTAGAACTGCCAGTGCCATCTGATAGAACTTCACAGGTGAAAGGGAAAATGAA-GACTTCAGCCATTTGTGGTTATTAAAGTCCCCACAGTTCTCTTTTACAAGAATTGGGTGATTAACATTCATAGTCTTGGCCCGTTTCCAACACCAAGAAAAGACTCACACTTCATGGTTGCCTGCTTGCTGGG-----CAGTTTCCTCTGGGACTGCCGCATGGAAATACAGGGCA-AGGACTTAG-CCCTGGCAAATTAGCCAGTGTAGACTTGCTGTGAAAGCCCCCTTCTCATGGTGTTTTAATTTAGGACATCTGAGGACCACCTGGATGTAGGAAACCAAATTTACTCCTGTCTTCAAAGG-------AGAGAATTGAGGTGTAGGTATAATTTACTTTAATCAATTTCAGTTTCACTTGCCTCGGCTATTTTATAGAACCAACACCTTTCCCCTCACCGTGAAAGGTATCAGGGCTGAGCAATGAGCAGATGCGCTTCTGAGAACACCTG--CAGATCCTCGCCTATTGAAGTTGTTTCACTCTGTCTTGTGAAAGCCTGTCTTCAGGCTAAAATATCGCACCCACTTTTTAACTTCCTTAAAATAT

a score=59645
s chr3            99864137 3163 + 160039680 agagagagagagagaaagagagagagagCAAATCCAATTATATATGCTTATTTATGCTCCT------------AAAACATAACTTCCCTAGATGCCTAA--GATTCCCTTTCTCCTTGGAAACATTAACAAGTGTGACTACTCTTACTTCTATCATTGTGACCCACTTGAAAATGTCAGTCTGTTGATAATAGAGAATATTTCCTGCTTCTTATCTTTTAGAAGAAAGGAGTACAAATCCACAGAGACCCACAAA-------AACTA-----CTTTACAGAATCCTGGATCCTATAGCTTCTAAGATCTACTGTTAAGTAACTATGGCCTTAGGAAG---TGAGCTGCAGATAGCTAAGAGAACTGCATGTATGAACTTAAAAAATGCAAATGTTTGAGTCAAATT--TATTCCTTTAGAGCATA--TTTTTATTAAGAAACTCATATACAAATATATAATCA---TACATAGTGTTATTACTTTAAACCCCAAGACTCAGATTATAGTTATATAATCTATAATCTGTGGCCAGTTTATGGG-ATTAATGCCTGCATGTCTCGGGGCACTACTGAAA-----TGAAGACTATCATAAGTGAGACATCCAGCTATAATCCTTGATTACTTAGACATCAATATGGACAGCTTACT--------TCTGCCCCATACTCACCCCAACT--------CATATC-------CCTACATGGCAGCAGATATACTTGGTCAGCTATACATTGGCCTGAGCAAAGGACTGGG-TCTATGTCTCTCTACCCAACTCACTGATTGTATCCATCAAAACATCTGGTATGGGACTGCCCTCTGGAGGCTTAGGAAAG-CTTTTCCTTTTAAAGGCAGTCCACAGATTTAACCAGAAGCACTGAGGATGCTAAAGTTCAAAACCATCATCAGACTATCTAATTCAGCC-TTCACGAATGAGGG----------ATTGAG-----CCTGCAGAAATACAGCCATCTTCAGGGTGTCCATCCAGCAAGACCATCACCAGGAAAGTTACTGGACCTTTTTAAATGGAGGTGGTGGGGAGGCTTGGCTTGAAGTCATCTGCTAATACTCACATCATTCAGGAAAAGTGTTTACGTTTTAGTAGCATTTACTAAATCCCTAGTGTGGAGAAAATGATGAAATTTGAAAATATACAACTACATCTG-------------------------------GGTTGGGTATTGGTATTTTTCTCTGGCTGGAAGGACAGACAATGGCTGAGTTTTATCTTTCGGAAGA-ACTTCATGGAGAA---GAAGGAGGAAAGAAAGTGTATCTGTAGTGGGATCAGAGGGTCCAAATTCTAGTTCTTCTCAGTGGGTGAGTTTGAAATCAAACTAAACATTACAGCGAAAACAAGATCAGGCGTTGGCTAGTAACTGGTTCTGGGAAGACTCTTATTTCCCTACAGAGGAAAAAAAAATGATTAAGGCTT----TGCTGTCATTCCTTAGCAACAATCATATCAATAAACCAGTTTTGAAAT-GCTAAAACAGATTTTCTCAGATGTAAGTTGCAAGATGCTGTTTTGTATTGACTAA-GCTGAGAGCTGTCGAAATTTCTTTGGATG-GAGGATTGAGGCTGAGGGCTGCACTGCTTTCAAGGGGAGACTTTTCCCTCCTTGCTGGAGCTAAGCACTGTTTCCGAAATATCTGGCTGGATCTTAAAAGCCATTTGTGACAGGTGATAATTGATTATACATTGCCTTTTGCCAAAAACTCTAATGTCATTGCCATATAGAGACACAGCAGCAACACAgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCACGTGCAGAGGACTGGAACACAAATAGAGGGATTCATAAATTAAATTTAATGTTTCGTAGCTCTTCTT----TAAACAAAGTAGGTGTGGAAATTATTTGAAGTTAAAATATATTTCTGCACAGAGTGGGTGCCAGTGACTGGGTGTGTATGTGGAAAAGGAAAGCAGAATAAGGAAGGTCATGTGTGGTGCTAACAAAATATTAAAAGAAGA--AAAGGACATGCTGATATAAAAAGGGGAAATATAAAACACTGACATTT----CAATTTCAAGCATGAGCCATACA-AGAAT-ATACTGATAAAAATT-CAACAATAACAATTCTACATATACACACAAACATACAGTTATACAAAAAATAAAAACAATAAACTGGGAAATTGTCCTTGGGGGAGTTTTCACTGGATAAACTGTTCTGTG-----CTTCTCCAATTTACTGTAGTCATTTTTATTTCATTAAAAAGTCAAGgccgggcgtggtggcacacacctttaatcccagca---------------cttgggaggcagagg----caggcagatttctgagtttgaggccagcctggtcta----caaagtgagttgcaggacagccagggct--------acacagagaatccctgtctcaaaacaacaaCaacaacaacaa------caataataataataat----------------------aataataaA----------------------------------------TAAAGAGT---------------CGAAT---------TTCTTCAATTG----CTGAGAAAATATTCTGTGTATGTATG----------TGCCTA-AATAA-------------ACATACAGTTATA-----------------------------CAAAAAA-----TAAAAACAACAAT-------------AAACGGGAAATTGTCCTTGGGAGAGTTAAAAAGGCTACAT--GCTA-AAAATAATAAACATTATTATCATACTATCATATAAAATTAGTA------TCATTTTATAAAAAT-------------TGTGTTTCC-------TGTGCATGAATATTCGCATAC----AGATTATGAATGAAACTGAATTTCTCTC-----TAAAGATTATCAATGGTTTAGAA------------------ATCTCATAGAG---AAAAGAGTTCTTAATATTAT-------------ATTAACAGATATACA---TTTCCCCATTTGTATTAGTTCACAAATACA-ATAATATTTATGCCACAGACATTTATTTTCTACAACAGTACATG-GACGGATGCATTTTTCCAAATTTTTCT-TCTTC-----------------------------CATG----------TAGCAGATA------------------CTTGG--------------AAGCTTTGGATAGACTCTTAAAATACTC-ATTGCCTACAAACCC--------CTTTTCTCCTCCCCAGCCCATGCTCCGTCCACTCCC-TTTCGTCTTCTTCCCCATCTTTCTTTG-TTGCTACGGCTGAAAGTGAAACACTGGTCTTTCCTAGTGCCTGGCCTGGCCCCCGTTCTGTGGTTATCATATGAGATACCATGATGCTGTAATTT-TTCAAATGTTTTAGGGACTCACATTTACAT-TTATGGACAAACACAAAGGATCTTATGCGCttacagtattcctccccttgctttctgaggagaatcttattgcatagctgaactgccaagcccttactgtgctgagtggagtgaCATGTT
s HiC_scaffold_1 109816310 3479 - 233722169 aaaggggaggggagaaggagaaggag-gagaacgcagttattaaaaatgttttgtgttcTTGGATATCTTTGGAAAATATAACCTCACTGGAAACAAAAAAGATTCATCAATATTTTGGAGACATCTGCAGGTTGTTTAACAAATAATACTGGAATT-TAATCCACCTTAAAGTGTTGGTCTATC---AATAGAGAAACCTTTCTGATTCTTATCTCCT-GAAAAAGGGAATACAAATTTATAGA--CCCAAAAATACATTTAACCAAAGATCCTTATAAAACTCCTATTCCTATAGATCCTAGAATTTGCTATCATGTAACTGTATCTTTGAATAGATATGAGCCATAGACAG-TGAAACAACTACAGGTATCTATTCAAAA--TGCAGTTATTTGAATTATATTGTTAATTGTTGCAAGTatacattttcaataaaaaaaaaa-acacaaatacacagTGAATGCACATGGTTTTTCTCCTTCAATCCCTGGGAAGCACATTGTAGTAAAA------ATGATCCTTCACC--TTTATGGACATAAATTCCTGTGCTTTTCTAGGCCTCACTGAAAATACCTGACAATT-TCACCACTGAGGTCCTCAGCTATTAATCTTGACTGTTTAGCCACTAATAAAAGAGGTTTATTATGGTCACCCCACCCCAAAATCCTCACAGCTGTGTGTGTCACATCACGCAAACTTCCAAGGCAGCAGCTCT---------GTCCTCCATCGGACAGAAGAGCGGCCGGAGAGTTCAGTCACTGACCCCA--TCACTATCCCTGTCC-TAGGAACAGCTGCTATGGGACTGTCCTCTGGAGGCTTAAGAAAGTCTTTTCCTTTCAACGATGGTCCAAGGATCTAACTATAGGCATTTTAGATGCTGAAACAGGAAAAGATCATTTGACTATTTAGCCCAGCCCTTCACAAATGAAAGCTGTGTGTGAATTGTGGTTCACACAAAGGGAATCTATCATTATCAAGA-GTTAACCCAGCAGCacaattttcaggaaacttattGCAGCGTT--------AAGTGGTG-------------TTAAATCCTCTATTAGTATCCATGTTATCCAGGAAAATCAATCATATCTTGATAACATTTAGTGAACACCTACtatacataaaacaataaattttaaaaatatatatatatatatatatatatatttactatatacataaaatgtatgttttaatatttatgattttatctaACTGGCAGAGTA----ACGATtgacttttattttacttgagagactcaataaagaaaatgaaaaggaaaataaagtacaCC---GTCGGAGTCCTAGGAGGCAGATTCCAGCTTTTCTCAATTGATAAGTTCAAAATCAACATAAGCATGAAACT--AGGCGGGAAGTGGCACTGGTTTGTAACTGGCGCATATAAGATTCTTGCTtccctacaaag-aaaaaaaaatgattgaaaatcaTTATCCTGTCCTTTCTAAGAAATATTAATACTCTTGAACAAGTTTGGAAAtagctaaaattaattttt--aaatataagttgCTGAAC-----TCTATATTAACTAAAGCTGAAAGTTGTCCAAACTCCTTTGAATAAGAGATTTAAGGATGAAGGCCATACAACTTTCACAGGGAGA--TTTCCCCTCTCAGTGGAGCTAAGCGCTATTTCCAAAATATCTGGCTAGATCTTAAAAGTCATTCATGACAGGTGATAATTAATTACATATTGAGTTTTGCCAGAAATTCTAATGCCATTGGCATATAGAGACACAGCATTAACACA---------------------------------------GTACGTATGTGCAGAGGACTGGAACACAAATAGAGAGCtccataaattaaatttaatgtttCGTAGCTCTTCTTTAACTAAACAAAGTAGGTGCAgaaattatgtt--gttaaaatatatttctgtgtaaAAGAAAAACCAGTCTCTAAAAGAATATATAGAAGAAGAAATCAGAGT---TAAGGTCTTGTGTGGCACTAattgaacattaaaaaaagaagaaaggatgtcttgatataaaaata------atcaaacattgACATTTTAAGTAATTTCTAACATGGGCTATACacaaaataatgatgatgataattacAACAATAACACTT----ATACACACCCTTGCGTGCACGTGTACACACAGCAAGGGAAA------GGGAAATTGTCAGGGGGTGACTTTTAATTGGATAAATTGATCTATGTAACATATCTCAAATTTTACATAGTCATTTCTATTTTAACAAAAGGTCAA------------------ATTTCTTCAATCACTGAAAAATGTTCTGGTAATATGGAAAGGGAGAAGAAACAAAGTAGATGAGTAAACTCAA---CAATCTAGAGTGAAATTAAACCCACATTTAAGACagttataatttgtttaaaacatCTTAAATTGTATTCTGCCCACTACACTAGAAGTGACAAACCAAGCGATCATGAGTCAAATTAGACTAGCTTTATTTGGCCTaagcaataaattttcttttgttttgttgctgtcgTTTTTGCCATTCCTTTTAAAGAGTGTCACAATAGCCTTGCAAAGGTTAAACAATTCATCATTTTATACCCAGGCAAATTATTGTCATATGCATGCAAATTCACATGTCTATAGTAACTGTTTGGTTTCTACATACATTtttggtgttttggttttgttttgatctctGCTCCAGAGCAGTTTCTTAAAATGCCAATCACTGTTCATTCAAAACTACAAAATTTACTTAGGGACTCT--GGAGCCAACATCAGCTAGAAAAGACTAAAAATTA--ACAGTACT-TCACAGATAACAAATATAAGCTTCATTTTATACAGTTTTCTTCATGTTCATGTGTATATGCACATGTGTACATGTATAGATGTATACACGTAGATTAcaagtaaaaatgaatttttatcgTGGGTAATAGTCCAAAATCTTTTGGAAAACACTGCTCTGAAAAATAGCTCAGAGAGTGTAAGAGCTTTCTTAAATTTATGCTCAGATTTAACAATCACAGATGTACAATTATTCCACAATTATATCATTCCA-AAACACAGAttagattcattccaggaatataTATTTCCTGCTATTGGGTGTGCCACAAA-----TTTTCCTAATACCTCTGTCTTCAAAAACTAATAGATGGCCAGGCTCAGTGACATaactgtctgcctggcaagtatgaagttgtgaattcgatcctggtacaaaaaaaactaAAGCTTAAGATatgtccttaaaatatttgattatctGCAAAATCTAGTAGGTCACTTCCTTTCCCTGGTCCAAGCTCTACCCACTTCCAGCTCATCTTCCTGTCAATTCTTTGTTGCTCACTATGGCCAAAAGTAAAG---TTGTTTTCCTTGCCACCTGCCTAAACCAC------ACATTTagcatattttattgtataat--tgTCATTTCTTCTGatgtttt----attcatgttttaatCTTATTGGTAAGCACAACAAATCTTAAACATTTACAGTATT----TCCTTGCCTTCTAAT--AAAGTTTGCTACATTGCCTGACTGTTGAGCCCTTTCTGTCTTTAACAGGGTAACAAGCT

a score=32194
s chr3            99867867 1715 + 160039680 TGCAAACACTGAAAAGCAGAGAAAAGGGAAAAGTGTATTCTACATGAGAACAAG----GAAGCTTTACTATAACCCAAGAACAAGAGAACAAGCTCAGAGAGTA-AGGAAAGAGGGTGGCAAATGGGGAGTGGTGATGGACTATTAAG-AGGGACAGTCAGTCTAGAGTTTGCTAGAAAGATAAGT----AAGGGAGACTCTGAGCTGTTTTCTAACTATTTAAGCATTTCCCCTTCGCTATGTGTCCAAGAGCCCTTTAGAAAAAGCATTTTGATGTGTTTTAGTGCTGTCTGGGGGTCACATTGTAGCTCGTGGAGATACTTCACTGTGCCTTTTAGACTTGGCAAACTGGCTTGGGCTGTGACTGTATGCTCCCGTTTCCTAAGGCCTATGCTT----------------------GCCTTC-----------------TTTTAAAGAAGTAGGCTTAAGACT--GCTGCTTAGCC-ATGACACACCAAGCTTGTAGGATTCACACTGGGGGCTGGTGCTTCTCTCTCTTCTTGACAAGGGAGGCTTGCTGTGTTTGTAGATATTTCCCAGTTTCACTCGGAATTCAGAAT-TTTG-----ACTTTTCGTTG------------------------------------------------------TCA-------------------------TTAAAATC------------ACAAGGAGAAAGAGAAGGAATAATCACCATA-----------------------ACTATATATCTGT-------TTGTTGTTTAATATAAT--TATAAC-TATTTGAGA---AAGGAAGAATCTATAAAAGAAGTCTCCAGAAAGATTGTTAAAATA-----TGACATCAGGTAGGTACACTGTCCTCTCTGGCTTTGCAATATGTCAAAAACAATGGTGACACTGAGATTTTTGAGTAATAAGTTGTTGTCATTTTGTCCAATTCACAGACCTCAGGCATAAAAAAAAAAAAAAAACAATCTCCCACATTACA-----TCGGACAGAAC---TATTTGGG-------------------ACTAAGGCCATGTCACTGC--CCTGCTTTAACAACTTCTGTGTCACATGATCATCCCAGTGCTGC-ACACCCTGGACAG----ATAGCCCCGTGCACATGATG--------GCAGGATCAGGGAATGACGTCAGGGAATCTGT-GTTTGAGGAAGAATGAGCTATCCG-TGTGTGCAATTCTATGTGAGAAG-TTTAAGAGGTACGTCTGTTGCCACATTTCAGCAAACCATTCTCCAATAAACAGA-CCAAACACTTGGCATTTCTGTGTGTTAG-TGCGCATTTTATGGATAGCTTTTGTCAGTCTAAGCATC-----------------------------------AGCAATAAATACTATTGTAACTGCAAATGATAAAAGCTTCAAGGATATCTTCTGGTATGAGCTGACATGTCTGGACAATTAATTCCATCTCTCTAAGGTGTTTATATTACACAGCACCAGCCAGTCACTGAGACAATAAGGACCTTTTGTTTGATGTACCTCAATCTGTACATCTGCTTCAATTCCTCCACCAGATGTTCTTATTTATTTATATTCTTTCCCTTAAG--TTTGAGATACTCCTACTCTGGGTGAATTTGTATTAATACAATAAACTATATTATACAGGATGTCAAGTAAGCTAGTGTGTTCGCCAAAATTAAGTGTAACTGCCTTAATTAACCCAAAAGTGGTGTGATTCTAGAATTTTCCTATCTA---CACACAATGAGCTCTTATTATTCTTTTCTAATTTATACTAGCCTTTTGAAAT-------------TTGTGTCA---------------------------GCTGCTACAAATTTTCTAATATAATCAGTCCAATTAT-GTCTATCAGCGGTCATTTATATTTGAATCACTTGCAAGATTATTTCCATAACAAACAGGTGCAACTGTTAATGTGTGTTGAAAATATA
s HiC_scaffold_1 109819793 1951 - 233722169 TACAGAATCTAAAAGGCAGCAAGAATTAAATAGGGCAT---------GAACAGGACCAGAAGCATCTTAATATCCTGAGAACTGAAGAAAAGACCTGGAAACTGGAGGGAAGAGGGTGAGGAGGAGAAGGTAGCAATAAACCAAAAAGGAGACTCAGTTAATGTGGAGTTCaggaaagagatttttttaaaacggAAATTT---ACAgttttctgaatattaaaaattttctccttGGCTAC---TTCAGGAGATCTTTGGtaaaagtattttattacatttctacATTTTATGAAGTCCTATTTGTGGGACT--ATGATACTTCACTATGCCCCTGG----TGgcaaatt---------tataattatatatttacatatttataggtATATATTTATATCTCCTAGGTCTGTGACCAGTCTTCCCAATTGAATTGTAACATTTGGAGAAAGT--GTTTTAGACTTTGTTGCCGACCCTATGACACACACA--TCATGGGATTCACACTGAAGG--GTTAGTACTGTTTCCTCACTATAGTGTAAATTCAGTGCATTTGCAGGTAATTCTCAACCT-ACCCAGAGTTTGGGGTGTTTGTCTATATTTTTTGTTggagtactgaagattgaacacaCAGCCTTTGGGTTGAGCCATATCCTGAACcctttcaaaaatttctttttttaaattttgagttaaaATCTTGGTATGTTACCTAAGCATGattggaatttgtgatcctcttgcctctgcctctcaaagttctgggattatagcaCTGTGCTATCCTTCTCACTTATTACAGTGTTTTAACACATTTAAAATCcaattaacaattta-aaaagaaattt----aagaatcaTCAGAATAAAAACTTATATCACCTACATA---TTTGTTAACTAACCATA-agtatttgaaaaagaa-----acactgtaa------------aAGTCGTCCATA--------GGCTTACAGACATTACTCACAGTAGCAGACACActgttctttcctatattgtaATATGccaaagaaaatgtatatttagatttactattaataaataataatgaggCCACTTCACTGCTCCCTGCATTAAAAAGCGGC-TGTCACAGAACGGTTCTAGCATAGCGATCCCCCAGACAGGTAGATAGTTGTGTGTATACAATATTGCTGAAGCAG--TCAGTCAGCCACCACATGTTACCTATCAATTCAGGAACAATAAACTATCCAATGTGTGTAGTGCTATGTGAGAAAACCTAAGGGATGCCCTTATCATCACATTTCAAGAAAGCATTCTCCAATAAACAGAACCAAACACATGCTATTTTTGCATCTTAAATTCACCTTTTATTGATGGCTTTTATCAatgta-gcatatatatatatatatatatatatatatatatccccaaaGCAGTAAATATTATTGAAACAATAAATGATTACAGCTTTTGAAATATCCTTTCATATGAGCTGACATCTCTAGACGATTAATTCCATTTCTATAAGTTGTTTATGTTATGCAGCACTAGCCAGTCCCCGAGATAATAATGGGCTTGTCTTTGATGTACCTCAATCTCCACATCTGCTTCAACTGCTCAACCAgatgttcttatttatttatattctct-aCTTAAGTTTTTGAGATCCTTCTGCTCTGGGGAAA--GACATTAGTACAATAAACTACATTACACAGAATGTCAAAAAACCTAGTGTGCTCACCAGAATTAAACATAACTGCCTCAATGAA-GCACAAGTGGCATGATTTTGGACTTTTcttaaatgtattatataaagAGCTCTTA--AATCCTTAATAAATCACATTAAGCTTCAGAAATATTAAAGTATCCATTGGGACAATGCAAACaatcttttacaattttttgaTTGTTGCAAATTTTCTAATATAATCAACCCTGTGATCATCTTTTGCCTGTGA-CAGTACCTGAATCACCTCCAATATTATTTCCAGAGAAAACTATTCTAATGGTTAATATATATTGAGTATTTA

a score=17928
s chr3            99869612 634 + 160039680 ACTACCCCACCAGCTCCTTCCTGCTC-ACACCAAGCAC---CAGTCATACCTTT-CACGTCTTCCCTGAGTTGCTCCTTCAACCTGCCTCAGAAACTGAGCATCTCCAGGATCAACAACCCTGACTAAACATTCTCTCAACAAGGGCAGTTTTCCACGGCCATTTGACTGCTGCCAAT---TCTGGAGAAACATTTTAGATGCCTGCCTGATGGCGCTCTCTGTAGTCTGA-AGGGGGGCGGGGTTGGA-AAAGGGGATC-CACAGAGAGAAGGAATGCATCCCTCTTTTCCT----TTCAGCTGATACTGTTGTTTCAGGATGTGAGGGACTTCCATTGGTGAGAGAGATTTATTACTTATTTCCTAGAGAAGACA-TTTTTCCTCAAGTGTGAACATTTAGACAGGGGCATGCAAAAAGTCATGGTCCCCTCCCCCACCTCCTTGTAACTTAGAAAGAGAAACTTGAATCTACCCA-CGTCCCTCTGTCCTTGGGGATGGGTAGACATAAGCTTTCTGAAGCCACACG----------------------CAGAGGGATCATAGACAGGATCACCAGCTGA-------AGGCTTTATAGCCACAAATGAACTTAAAGTCATTTGTGACGTTTAGAAATTCTCCATATGGAGGGTAGGTCACAGTAGAGGGACCAGAAA
s HiC_scaffold_1 109822647 647 - 233722169 ACTCACACACTGGCTCCTTGCTTCTCCACATTAAATGTTGTCGGCCACAATTTTGCATGCTTGACCTGGTTTGCTTATTCAACTTGCTTTATAGTCCG--TCTCTCCAG---CGA-AGCCCTCACTAAACATCTTCTCACGCTGGGCGGTTTGCCATGGTCATTTGGTCACAGCCCATGGTTTTGAATAAG--TTTGAGATGTCTGCACTCTGGTGCTCTCTACAGTCCGATAGGGACACATGTTTGGAGAAAGAGGATTGTGTGGAAGGGAaggttgctttattttttttctccttttcagct--CACAGTTGTTTCTGGATATGAGTGACTTCTATTGGTGAGAGAGATTTATTACTTATTTCTCGGGGAAAGCAGTTTTCCCTCAAGTGTGAACATTTAGATGAGGTTGTCCAAAAAGTCACTAATTTTTTGC------CTTTGCAAGTT-GAAAGAGAAATGTAAATCTACCCAGTGTCCCCCTGTCCTCAGAAATGAGCAGTGATGTGCTTTCCAAAACTACAAGACAAAACTCTGGGTGTTTCTTCCTGATAGTGAGTACACAGAAGCACCAATTGAAGCAAGCAGTTTTTGTAGCAACAAACTAACACAAATTCTTTAATGACTTTT----------------GAGAGTGCATTGCAGTAAAAGCACAATGAA

a score=58246
s chr3            99878032 1960 + 160039680 TCACTTCTCCTTCCTACAGCACTTCCTTCCCTGCAGCCTGGCATCGTGTGAATTGGCACAGTCTATTAGACTGTAGAAGTTTCCCTGAAAGACTTTCCTGTTAACCAGAGCTCTTGAAGTTTGTACAACAGAAGACATAAAATTATTTCACATTGTAAAATTTACAAGTAACAGACATTG-ATAAACAATTAAGAAATCAATCACAGCATTCTAAGCGCTTGGAGCAGTGACATAGCATGGATCATGAAGTCTGAGAGTGTCCCCAAAGGATTAAGGACAAATTCCTTCACTGAAGATACTGAAAATGAGTTTCAAAGGAAATGGAGAGTGAGAGAGCACTAGGAAGGAAGATCCCACACTAGGGA----ATGCGAAACAGATGCACGCTAG----CTCTAGTTTTGATATGCGTAATTGTTATTTTC-TGATTCATCGAGAAATAGATTTGGTATCCTGAACTCTCTCACGACAGATAACATAAAAATTAGCAGTGCTTAA--TTAAGGTCCTTCAGACTTACAGATGTGTAACAAAGTATTTATGAATTGGTGTAATAAATTGTTTCCCCCACTAAATATAAGTTGAAATTTTTCAAGCATATACTTCACTCCATAAGGTTTCCCGAATGCCAGTGGCTAAATCAAAACTATACTATTTGGAGAATTTTCTCTCATTGTCCAGCCTTCAAATTCCAAAATTTTGCTTTTATCCTTAATACAAACTGAGGGTTCTTAGGGAAGTTCTTTAGAAAGTGATCCTGCTCCCAAGCTGCCCACAACCCACCTGGGACTGTGAATCGCATGCCATGCACTGCAGCTGATTTTAATCTCCACAGTGATGCATAGGGA-GAGATGCAGTATCTAAAGGAACTGGCAGCAGAACAACAAGGAGCTTTAAAGATTAAAGTCAACACTTTCCACTGCACTGAAGACCGAAGAGGAAGTTAATGCTGACCCCTGGGCCCAGGTGTAATATCCTCCATATGTTTTAGACTTTAGCTATGGAAGAAGTGTAGCTCTCAGTATTATAAACAATAAAGTTCGAA-GACACCATATTTCGTTTTCTATTAAGAGTTTAGAAGCACGAGTGGTGTGGTATAAACTGGACACCTGTAATGAAAATTGTCCTTGAATACAGAATGTTAAATAGAGAAATCGATAGATATC--TTAAGG--TCTTGACCAAAGATG---------------AGCTGAATAGATGTCCAATACCTGGAATCTTGGCTCAGATGTAACTCACTGCCTAGCTCCTAAAGTTACCTCTTCACAGTGGAAACA-TGGCCATATGAACAGCTGCCGAGTGTAAGGAGGAGAATATTAAGCCATGTACGTGAGTAAAAGTTAGTTGA----ACACTGGAAGATCAAA-GACAAAA----AAAAAATCATTTTCTCTGCAAGCATAGTAAGCTAAAGAAACAGCCCAGCTTGAAAAAAGGCTGTCCTTGAAT-AAACATATTAAATGCAAAAATCTTACTGGAAGCACTAAATCAAACAAGCCGAGAGCACCCCTGCCAA--TGAGAGAAAACTCTCCAAATAGTACAGTTTTGATGTAGCCATTGCCATGTGGGAAACCTTGTGTACTAAAGTATATGCTTGAAATTTTTCAACTTATATTTAGTGGGGGAAACAATTTATTATACC---AATTCATAAATGTACAACAGATGG-AATGCTTCTTTTTCAGCTCTTGGCAAAGCCTTCTATTGGATGAATAGTCTTTGGTTCTTAAAACTATGGCCATCATCATTCACACCTATTTTCTTAAATTAAACAGACCAATTCCATGATGAAATCGCCTATAAATTTGGTTACCATAGAATGCCTTCTCATTCTGCACCATAAATTATCTAGAATGCCACTTGCCTTGAAATAATG-AAGGGGGCCAAGCGGGCCGAAAGGCATTCTACAATAAAAACC---ATTGGGATTCCTTAAGTCAATTTTAGAAAACCCTTCATATTGCAATTTATTCTGGTAGCACT
s HiC_scaffold_1 109844212 1789 - 233722169 TTACTTTTCCTTCCTCGGGGACCTTT----CTATGATCTAGCATAGTACGCACTAGTTTAATTTGTTAGA---GAGATGTT-----------CGCTCACCTTAATCATAGCTTTTGAACTTTACA----AAAAAACTTG---TTACTTAGCAtagcaaaa---ataagtaaaaggcaTTGgataaaacattaagaaatcaaacataTAG--CTAAGAATTAAGAGAAATAACTTACCATGAAGTATGGATTTTAAAA-TGTCCCCAAAGGATTAAGATCAAATACTTTTCCTGAAGATATTTGaaattacatttaaagaaaa----acttgagaGAACACGAGAGTGAAAAATCCCACACTAATGATCAAATATGAAACAGatgaatattatatttttctatttttaatatttgcaacTCTCACTTTCATGATCCATTAAGAA-TAGacttgatattttaaattctcttgctacaaataacataaaaattaactgAACATCACTTTATTGTTTTGGAGACCTACAGATACACAAGA------------------------------------CACTAAA----------------------------------------------------------------GCCAAAACTGTA-------------------------------------ACTCCAAG-TGTTGCTTTTATGGCTGACACT------GGTTCCTCTGGAGTAGTCTTTAGAAAGTGA--CTGACTCTCTGCTCCCCACAGCTCATACGGAATTATGA----TCTGCCA-GCACTGCAGCTGACTTTAATTGCCACAATGATGCATAGGGAAGAGATACGGTATCTGGAGTAACTAGCTTTCAAATAATGAGAGGCTTTAAAGATTAAAGTCAATATTTTAAATTGCACTCAAGGCTGAACAAGAAGCTACTGCTGACTATTGAATGTAGGTGTAATATTGTCCATATGTTTTTGACCTCATAGCTGACAGAGACACAGCCTTCTCCATTACACACAGTGAAGACCGAAGGGCACTGTATCATACTATACtttga-aatttagaaaaacaaagatcATGGTGTGAACAAGACATATATAGTGAGAAGAGTTCTTAGATACAAAATGAAACATGGAG-------TAGATATCTGTGAAGGCTTCTTAATCAAAGGCAAATATTGACTAAGGCagacaaatattttttgaatactTGAAATTCTAGCTCAGGAGTGAATGAATCTGTGGCTCCTGATGTTATCTGATGACAACAGAAATATTGGATGCACAGAGAGCTGGCCAG--------------------ACCATTTTCAGGGGTG-----TAGTTGACCTCATACAGTAAGATCAAATTATAACACTTGAAGAAATAATTTACTCAGTAGTCATAGTATCCTAAAG-AACACTTCATCGCTCAAGTGGTCAGTCCTTGAATGAAACACATTAAGTACAAAAA-CTTACTGGCAGTACTAAAT--GGCAAACCAGGAGTAACTTTGCCAATGTGAAAGAAAATTCTTCAAATAGTATAGTTTAGTTTTAGTCATTGGCATATGAGAAAATTTATGTAGTAAAGTATATGCTTATAAAATTTCAACTTACATTTAGTGAGGGAAACAATTTATTACACCAAAAAAGTATAAATGTATGACAGATGGTAATGCTT-TTTTTCTGCTCTTGGCAGGGTCTCTTTCTAGCTGAATGGCTTTTACTTCTTAAAACTATGAACATTGTCATTCACAcctattttctgaaattaaacAGACCAATTCTATGATGAAACTCCCTATAAATTTGGTTACTATATAATGTCTTCTTGTTTTATAtcataaattatttaaagtacCACTTTacttaaaataacataaaaagccCAAACTGGGAAAAAGGTATTCTGccataaaatctttattttatattccttAAATCAATTTTGGAAAACcttctatatttaaatttaatctgGTAAGACT

a score=12469
s chr3            99881505 909 + 160039680 TTTTTTGTTCAAACT--AGTTTGTAAAGTTATCACTTGTTAGAAAAAGCTACGGCTTGTTTCTTTACAATCTAAAAACAACACTTTTAGTTGTAAA---GTCTCCAT-TTCCATTTTT------CTCTTCTTG----CTTCGCTCTCTTATGTGGAACCCATGTTGTTAATCATCTGCTAATGACCTGG-CGGGATGGCTGGTAAGGGAGGAGCTTTACCTTGTGGTGTGAACTCACACTCAAGAAGAAGTGCAATTAGCAGTAAAACATGACACATAAACAG-TAGTTAA-TTTTTAAATGGAACATGAGCTTAAATGCCAATAAATGTTTTTATTACTTCACTCATAAAAGCACAG------TTCTCCAAGCAGCTTCAA---CTAGAAGAAATATGACCAAAATTTAGACTGATGTCATCAGT-----------------------CTGTAAGAAATCCACCCTTACT--TTTAAGCAATTATACAAAGACAGTTTTTATCCAATAACATTAAGAAACGGTTGGTGAAGAAGGAAGGGCTGGAGAAAGGGCCATGAGAATGAGTGAGCGGCAGACTCATTAGTTGCCATGGAGATCCTCATGAAAACTCTCCTCTAGCAAATTCCTCTGACATCACCACTCCTCGGTCATTTTATTCCTGTAACAATGTAAACGTCACAAGCGTAAA-TGTCACAGAGATTG-ATGTAAGCCCCTTCCCCCAAaa--taaagtatacatattataaatactatattataaatgtattttactatattttaatataataccatattataaataagtatacatattataaATACTTTTTTAATTGTGAAAGATTATTTTTGAGAAGGGTTTTTTCTTCAGTATCTGTATCAAAAG---------GGAGGGGATTGCTTTCTTCAACTAGTACAAGTTATGAACAAAAGTTAAAATGGAATGCGATCAGCAAACCTG----GAATAGGA
s HiC_scaffold_1 109845971 883 - 233722169 ttctatatttaaatttaatctgGTAAGACTGTCACTTGTAAAAAGTAGCTAGTGATACtttctgtgcattttaaaa-taaca--tttaattttatatgtgtctctctattccattttttcttgtctctttctgttttctccaatCTATTTTATTG--TCTATTTTATCAATCATCTTCCTTTGGATTGGACTGCACATACTATATGcaataagttttattttgaaacgtGCA-TCacattcaagaagaaa-aaaattagta-------acCATGCATAAACATCTAGTGAAACTTTTTTATGAAACACAAG------------------TTTTAAGtacttttctaataaaaatacaaagcttTCTGTCCAAACAATTTAAAACTTTGAGATAATCATGAACAAAATTTTGAATGATATAATCAGTGATACTGAGATGATTATTTTAATCTGTAAGAG--------TCACTAATTTAAGCCATGA----GAGACAACTTTAACCATACAATGCTAAGAAAACTTTAGTAAAA---GAATAGTATGAATACGGATC--------GATTGAGC------CTCGGTGATGGCTGTGGAGACCTTCAGGAAAGCTGTTTTCTGGTAGTTTCTTTGAACATCGCCATGCATCAGTCCTTATATTATTGTTACGAGAGAAGGCTTCCAAGTGTGAACTGTGGCTTAGACTGCATGGACATATTTTGTCCCAAAAGTTGAGGAGTGCATATTGCA---ACtaaaatggaaa--------accatattTTTG-AGATCTctgtgttatgtgtgtgtgtgcatgaaatCAATATCT-----------ATAAATTAT------------ACTTTTCCTCACTATCTATATTTAAAGAATTTCAGTGGTAGGAAAAACATCCTTCCATTGATTCAAACTAAGAACAAGAGTTGAAAATAAATCTGATCATTAGAACTGACCCAAATAGGA

a score=11299
s chr3            99885317 280 + 160039680 ACTCTGCTACTATGGAAACGGGGAAGCGGTTGACTTGAGGGTCCGGAACCGGTTTGGGGGGAAGGGAGCGAGATCCGTTCAGGAACTGGGCGTGGTCTCGGTTACCAAGGCCTCAGAGACGCTCAGGCCTGGCCTCAGCCCAGTTTTGAGGCCAATGAACCTCCCATCCTTCGCATGGCACCCAAGAAGGAGAAA---CCTACCGGGAGCGCAAACTATAAGATATGGGAACCTTCCCTCATAGCTGCACACTTGAACCAGGTGAGCC--CGGCCTCTCAAGTCC
s HiC_scaffold_1 109848946 273 - 233722169 ACTCGGTTGCTATGCAAC---GGAAGCGGTTGACTAGAGAGGCTGGAG--GGGTTGGGGGA---GGGGCCAAATCTGTTACAGAACAGGGCGTGGCCTCGGTTGCTA-TGCAGCAAGGACGCTTAGGCAGGGCTTTAGCCCAATTTCTAGACCAGTG---CGCCAGGCATTTGAATGGcacccaagaaagagaaaaacttggTTGCGAACAGCAGTTCTAAGATATGGGAACCTTCGCTAATAGCTGCACACTTCAATCAGGTGAGCCAGCAGCCTCCTAAATCC

a score=46726
s chr3            99887489 3240 + 160039680 TCTAGACTCTAACATTTCTAAGTCCAAGTAGAGATCTGGGGAGAGAAAGGCCATTTGCAGGCATTCCAGCCTGCCATTGGGACTGTCTTGTAAACGTGGAGAATCGACTTGGTTTTGTTTTTGttttttttttatattttatatatGGATACATGGTTCACTAGAGAGTTTGTAGTTAAGGAAAGTAAAATGGA--CCTTGTGCTGCCCTCTGGGGAAATGCTGCCTATTTATCCTTATTTTCCAATGTAATTGTTTCTTTCTCTATGGAAAGTAATTCTATCTGAGATGAAAATTAGTCCTGGTGAGTCGTGTGAAAGTAGCC-TGACCCTCCTGTTGCCGCTGTGGCTTCATGCATCGTTACTGTGCCTCTTCTGCAGGGTTTGAATAACTCAAGGAATGAAGGCTGTCAACCTCATACTCCCCAGCTACATTCTCAAATTCTCAGAGATGTTTGTCAAATCACCCTGCAAAAGTACCTTCTCTTTTAC------AAGTCAGATCTAGCCaaaataattt-------aaaaaaaaatttttttGGAGATGATGTTGGTCACACTGGGCTTGGAGCAAGCATTTCTGCTGGAATTCTATGCTGCTGAACCACAGGCTTCG-TGGGGACACTGACTCTGTGTTTGTTAGTCTGGTGCTGCAAGCACAAAGCTGTAATTTTCCTAGTGGAACTGAAAACCCCCAGGCACTATTTTTTCTTATAGTTTAAAAACATGAAGTAATATTCGGCCTTCTTAACCCTGTTCAAATAATATAGGTTCAATAAATCTTCTATACTGGTAGATATAATTGCAAGTCAAAGTAATATGTCACTTTAGCTATGAAGGGAATGAGCTCAGCTTTC---AGTTTGTTG-GAATGCGTGCTTTCTTATTGTTGGGAGAAAATAAATATCTTCTACGTACTTCCATATTTTG---TTAGCTTGGTTTTGTGCCTG-TAAAGGAGAAAATCCT---ATCAGT-------TAATGCCTAAATGCATGTTCCAACCGTGAGAATAACCAACTCTGACTTTGGCCAAAATGA--CTATGCTTGTGTAAAGTCCTTGTTCATTGGGTTTGGTAAGGAGCATCACATGTGGTACGTCTGAGAATAAGGTATTGTTTTAATTCATTAAGAGC--------------TTGTTATTCTTTTACAAGTATATGTGTTTGAATGCACCTGTGCTAATGTGTGTAACGAGGTGGGGCATGGAAGACAATGTAGTAATT-CTCTGGTATTATGAAAGATAGTTTTCAAATTACCTCATTGAAGAATCCAAATCGGTAATCGTTCTGTTCTTACTCTGAGAGCAGCCTGCACTGGAATTTAGCAGAAGCATCAAGTTCCCAGTTTGACTTTGGTGAATTATCCTCATTTCCTTATTATATCTACACCaatcaattaatagatgaattgattaattaatttgttgattgtttaattgattGACTGGGGAGCTGGCCTTTCGAGCTGGAGTTCTTGCCAACGTCCCAGTACATTTTAGTTGTTCCTGAAACAT-AAATGGTGACAAGTAATAGAAGGCACTATTCTTATCATCTTATAAAAGAAAAGGAGTTACCAAGTATTCAGTGACTAGGAGAGATCA----------GAGGATCAGAAGACCACTGG---------------------------AAAACTGGGTA-ATGTTAGACATGTAGGGT-AAAGGGGAAATTAGTTTGAGTGAAAAGACCAACATCAACTGAAATGCTTGAacagagacagagacagagacagagacagagacagagacagagacagagacagagaGTAAGCAACCAAGGCCCCTTTTGGGTGTACATTGCTCCTGAATTAAGTCTGCAAACCCAACTATCATTGACAGTTTTTG--CTGCCCATCTGCCAAGACACTTA-----TTAACACATATAAAACATGACACCTTAAATCTGAAAAGAAAAAATGTTTGGATGCATTGGCAGTAAGATTCTACAAGTG-ACAACAG---AGGTCTGTGTGTGACATTGACA-CAAGTTGA-----TCTACCATGGCTTTGGCAGCCCAAAGATGCTGTGCTGTAGACATtccctcttgacccaaagctgcacttcttaagatttcagctatcctcagccacctgtgc----tctgaaagcattaagca---gacacttgtaactgttacactgcacag-ctttctgagaggcaccatccaatctcgtaccataccccctccaccccacctatgacatgagccatccttttgtccattgtgac--ggcagtgcatatcgtttgcacactggcctcttcagagccatccagtgtatcaaatagactgttgtgac-tgacacttgttgtgcagtgcacaagggtt----------caaatttcaccatcactgcactcggccctggcctcaccgtgcacgggtagttatgatggtgatttgggtgtgccaaaaggagcagagaagtgcttcctatgagtgaaaaggaaaatattattgatttaataaggaaaaaatggtaggttctgaagctga------------ctgctatgagaatggatattctctcagtcaatttttgggaaaagggaaaagaaag------------acatgattactgttaagactgaaaaactttcatc-----tccatggtaaattgcttagctgagacagaaaagacagtaggttatgggtTCAACACTATCCACATGGTCAGGCAGCTATTAGAGTCTTAGAATATATATCCATGTAACAGAGACTATCCTATAAATTAAAATATTTCCATACAGCTGTCAAGGCAGAGGCCATTGGCCACTATGATGGGAAAAAGATGTTAACATG--------------------------------TCTATT----------------------------TTCTGTTAT-------TGAAACTCTTTTGACTAGCTAATAATTTACAAAGAAC-AGTTTTCTTTCCTATATAT----ATATTAAAAACCATCAAACCCTAAAACATGGTGGCAGCTTCCAGCAAGAGCC--CTGGCTGTGCCATAATATGGTGGAGGGTGTCCCA---TATGGAAGTATTTGAAAGAAATGAATAGGACTGAACTGCTTTTACCAAAGGCTA-CCCCATAGCACTTAAGCTACTCC---------TGGGGATGGTATTGAATGAAGGTGATGTCAACATGACCAGATTGTCTCTTTAATTTTATATTTTTCATGTGTTTGCATTATATTACATTTCATTATGAGCTTTTGGCATGTGGAGACCATAATATcaacctctagaagct-gccattcctcctcctgtctgaaattgacttctaaatgtgttttatataggtataatcatgcagcatgtgtcttgtataactggtttgttttgcttagcatagtatct------ttgatggcttttgtactgtgggttagaattcctttactt
s HiC_scaffold_1 109849879 3114 - 233722169 TCCATACTAAGCCGTTTCTATGTT-AGGTAGGCCTTTAGGAAGAGGAA--------------ATTACAGCATGCCATTgcaaactacttttaaaaatgggaaata------------------------tttttcattttatatatgtgCGTATGGTAGACTAGCATATCTGtacttaaagaaa---aaatggaagtcTTGTATCACACTCATGAGAAA-ATTacctttttattcttattttccactataattctct-tttctctgtggATA-TAATTTTCTCTGATACAGAAATAGATCCTAACAAATTTCATGAGCATAATTACGACACTACTGATATTAATGTGAC---ATGGAA---TATTGGATCATTTCT-----------ATAACTTTAG-AATGAAGGATGTCAACCCAGTAATCCTCGGTTACATTCTCAAATTCTCAAAGATGTTT-TCAAAGCACATTGTAAAAGCactctctcttttgcttttataagTCAGAGCCAGCCAACctaattttttctcca--------ttttctttgagATTATGTAGGCCAAGTTGGGCTTGGAGTGAACATTTGTGCTTAAATTATAAACTGCTGAACAACGGAGTTTGATGGAGGTGCTGACACTGCATTAGCT---TTAGTGTTGCAAATATGAAGCTATAATTTTCCAAGTCTAGTGGAAAACCTAAAGGCACTATTTTTTCTTATGGCTTGAAAACCTGAAATAATATTCAGCTGTCTTGATCCTACTCAGACAATATAATTTCAATAAATCTTATGTACTCACAGAAAGAATTTGAACTT-AAGTAATATGTAGTTTTAACTAC--AGAGAGTGAACTcagttttctttggtttgttgCAAATACATGTTTTTGTCCTGC---AAGAAGACAACTGCCTTCCATCTCCACCCATATTTTTTCCTCAGCCTGGTTTTGTATCTATTCAAAGAGAAAATTCCCGGATTAACCCAAGTACAATGGCCAGAGGCATGCCCTAGCCAGTAGTTTAACCAACTCTGAATTCAGCCTAAATAAATCTGTGGATGTGTGAATTctttattcataaaatttaacCA--AGTACTAGATATTATGTGTTCAAAAA-GTGTTATTG-TTTAGTTCCTAGAGAGATTATTTTCATATAGTTGTTACTCCTACACTGATATATGTTCTTGAGTATATGGTTGGTGTTGTATATGTGTATATTGGAGGTAGGAGAGAAACAAGTAATTCCTCCAGTCTTCCATAGTCTGTTTTTAGGACTAACTCACCAAAGAATACAAATTGATTGT----------------------------------------------AGATTTAAATTCATATTCAAACTCAGGTATACtagact-----------------------------ttaaagaa----------aataaatgtgctaTTTG--------------------GATGGTCTTTTGATCTGGAATATTTA-----ATTTTAGtccaatttattttgtttttgaacataaaataactacaa-taatacaaaacaatcttatta-------ataaaagtaaatga-tTAGATGGCAGTTAGAGGTTAGGAAAATTAATACCAACTGTGGAAACCAGGAAATGATTtgcaaaattttatgtttaagttGAGCCCTAAAAATGAGCAGAACTTGAATAagtaaaatgaaagagtaaattttTTTAGGTGAGGACACCAATGTT--------TGCCTCAAATAAATCAGGGAC----------------ATTTAGATTGAATAAAAGTAATAGGTTAGATTACTCA----------GAGCATAAAATGCTCCTCAATTCTGTC-----ATTCAATGATCATTTactgtatttgatttttccatATATCAAAACACTTAGTTTGTTAAAATAACTGAGACATTATACCTCAAGttagataa-aataattatttagataTACTGGCAGTAAGA--CCAAAAATACACATTAGTGTAGGTATGTATGTGATATAGACATTGTATTTATGCTTTCTAGCA--GCATTAGGAAGTCAAAAGTGCTTTGATACGGTAGCCCTCTCTTTAATTGTGGTTTTGCTCTCTGTGATTATACTTACTGTCAGTCAGTGATCCAGAGTCtgaaaatgttaagaaattaaaactcaCAGATTTTAAATGGCACTGACATTATGAGCACTGTGACAAAATCACGCACCAT-CATACACCATGGCACCTGAGAAATCAGTTCTCTGTTTGGCCAGCGTGTCTGTGCTGTGTGTGCCGCTTCTCCATTAGCCACTT---GGCCATTTTAGTCATCAAATAGACTGATTTGACATCACAGCTCTGGTGCAGGACACAGGACTTTCAGTTTCTCCacattttgctattattttacttaaca--gGCCTGA-AGTGTGTGAATGGTGATGTTGGCAATTCAGATATGTCAAAGAGACCCTGAAAGTTACTACCTTTagtgaaaaagtgaaaatt-----tttaataaagaaagaa---aaagttcataCACTGAGGTTGTAAGAATCTGCTCTAAGAATGcatattttat------gttattgtgaaaaatgaaaaagaagtttgTATTAGCTATATTATCTCACTTCAAATTGTAAGAGTTATGACCACAGTGCATGACAAGTT-cttagttaaaaagaaaaaga----aaattatgagctGACTCCCATCCACAGTTTCAAGCATCTGCTGGGATTCTGG----------CATGAAAC-------------------------TTTGCATGCAGCTG-CAAGGTAGACTCTACTGGCCATCCAGA-GAAGCACAGGTGCTAACCTAATCACTCAGTACTCACTGATCAGTAACAACATCctatttctcctcctctccagTAGCCCTACTCTCTTCTGCAATGCTATGATGAAACATCTGAGACCGG---GTGATTTATAAACATTGAAATGTGTCTGTTATAGGTCAGAACGCTAGTAAGTGTAAGAACCTGATACTT---------TTCTATCAAGGATCTTCTGACTGTGCCATTATAGGGTGGGATGTATCATAGagcaaggaaacaaaaaataaagaaaaatctagcTGAACTCC--TAACAGGAACCTATTCCCATAATAATTAACCTATTTCCCAACTTATTCACAAGGGTATTGAGCTCAGG--------ACATGACAG-------TTCTTAATGGTA-----------------------ATTAAATTTCAATGTGAA-TTTTGGAGAGAAGCATTCAAAACAACCAGGCCTGGAAGCCAGGTACTACATTCTGTATGTAAATTTGACTAGTAAAGGGACATTACATATTTGCTAT---------------TTTTGTAACCAGCTTGTGTTTCTTAATGTGATGTCCTCAAAATTAATTCATTCTTTAGTATGTGTTGAAATTTACTTAGTT

a score=45981
s chr3            99913380 1111 + 160039680 AGAATATGTAAA-ACCAGGATGATAATAAAAACAGTCTAAGTAAATTTTGAGGGGTAACTGCGCAATTGAATTGAAGTGCTTGAAGCCATTGTAAGTGTAGTCTATCAAAGAGGAAAGTGTGTTTTATTGGTTAGAACCCTTAAGCAATTTCTGAGAGGTAGTGAAGGTTTTTTCTTTTTTTTCTCCTTTTTTGATCCTAAACAGTAAGCTATTTCTCATGTTAATGTGTACTTAAGACTTACTGGAAATACTCATAATATGAGCTGAAGACTGATGTCTGGCAGCAGGCGTATTTCTGAAATTGGGTTGGTTTTTTACTACTATATTTTCTGAAATATGCCTTCACTGGTATTTACAAAACAAATTGCCAGTTCACACAAAGGTTGTTTTTTAATAAAAGCCAATGAAAACAAGCGAGTTGCTAGGAAGAACGTTAAAAGGGAAATGGACTTTTCATAACCTCACATTATAATTCCTCCTTCTGGACAAAAGTGTATTATTTGAATGAGTTTGGAGCTAAAGGGAATTAGTATGTCAAATTATCCCACCGAGCTGTTATGTGTGATCATTTTTATTGCAACTGAAAAAGAGCAGTAAATGCAAGCAAGAAGTGAGCGCTGCCAG--GGAGCTTGGCAGCAGCTTAGGAAAATGCCAGTGGAAGCCATGGTGGCTGTTGATCAGGGTTC-TCTCTGGCCATGGAAACTGTCACTGGCTCCCAATTC--------------CCAAAGTGTCCTGCCTATCCCAGTGACACTAGTCCTGCTTCTTGTGGCTTTTCTCTGGCCATCTAT------CTCCTCTTCCTCCACTGA-------------------AAGAGAATGGCCTCCACAAGAGCTCCAGGCAA-------------------TTACCTCCCCTCCTGCCAACTTCTTTCCATTCACATCCTCTCCAGCAGGATGCAGAAAGCAACTCCTGCCATACC-CGCTGGCACTCGCTGACTCGCCTCTTTTCAATAA-ACTTCAGTGGTTGGCACTTTTAAGAATTACCTC-TTTTGAATTGTTGC--ACTATGATTTCAGGGGCACCCCCTGGATGG--CTGCCCTCTGACGCTACGAATTCCCAGACATCCCAGACTCCTAATGCTTCAGATTTGAT-CTCCCCAGCTACATCATCTAGTAGTGAT
s HiC_scaffold_1 109864679 1120 - 233722169 aaaatatatagatactaAGATGATGATAAACTGAGTCTAAGTA--------GGGAAAAATGTTCTGTTGAATCTAAATGCTTGAAACTATTATAAATGTAGTTTATCAAAAAGGGAAATGACATTTATTGGCTAGAAATCTTGAGCAATTTTTGAAAGGCAGGGAAGGGTTTTTCAG---------CTTTTTTGATCTTAAACAGTAAGCTATTTCTCATGTTAATGTGTATTTAAGACTTACTGGAAATACTCATAATATGAGCTGAAGACTGATGTCTGGCAGCAAGCATATTTCTGAAATTGGAttgg-tttttattactatattttctGAAATATGCTTTCATTGGTATTTACAAAACAAATTGCCAGTTTGCACAAAGGTTG--TTTTAataaaagccaatgaaaac-agTGAGTTGCTAGGAAAAATGTTAAGAGGGAAATGGACTTTTCATAACCTCAcgttataatt-atttttttggaCAAAAATCTATTATTTGAATGAGTTTGGAACTGAAGGGAATTAGTATGTCAAAGTAT-CCACCTTGATGTtatatgtgatcatttttattgcaagtgaaaa----tattaaatataagtaaaatcTAAGTTTTGCCAGTATGAGTTTGGCAACATCTTAGGAAAATGTTAGT-TAAGAAATGGTGACTGTTGACAATGGTTCAGCTCTCGGCATAGAAACCATCACTGGCTCCCAGTTCCCACAGGATGAAATCCAAGGAGTTCTGCCCAAC----TTTCAC-AGCTCTGCCTAATGCGGCCTTCCTATACCTATTCATCTTTAGCTCCCTATGCTCCAGTCAGTTGTTTGGTGGTGTTCCTAGGTAGTTATCCACTACA-----CCCACGCAGTCTCTACTCCAGTGATTTCTTGCTTCCCCTCC-----ACTCCTTTCTGTTGAAATTTTCTCCTGTATCTTTCAGAAAGCAGCTAAAGCTAGCCCATTCTGGTCCTGactgatt--tcttttctctatactacttcagtgatt--------------ttgttttgtcttcagtTGTCACCTACTCTGATTTCAGTGCCATCATATGCCTGGTATTGTATTACAGCACTGCAAATCCTGGAGAGTAGCAAAGT-CTAACGTTCCATGTTTCTTCCTCTCCGACTACAGCAGC-AAAAGTGAT

a score=36680
s chr3            99928752 1803 + 160039680 TAGACCTACAAATAAAAGCCTACAGCGCTCAGGATATGATTCCACTAATGAGTAATAGTTACT---------CTGATACCTCCTAAACTGGAGGTGCTTATCCTAGACACATAGGGTGAAAAGATGAATTGG-----AGCACAGGTACTCTTACATGATACTAACCAATTCTGTGGTTGG----ATTTTATTTGGCATTGTGTTTTGAGTTCTATCCAGATAGTCATACATACATATATATTCACTCCATCAGTTTATGTGTAGCTTTGTTTTTTGTGATTATCTTTATAGCTTTCATTTCTAAGGT----CATGCCAGATAAGTACCCTCCTAGAAAA------------TGAATAAATTTATCATAAGTAGTGTAATAAACAATATGGAAGCTTCATACACTGATTTCTAGGTATGAA-TGTTTGAACATAGAGCAACTTTTCACCCTGC----------------AGAGTCTGTGGCTGAATGAGGTTTG--------------------------GTGCCTTAGGCT--ACCCACTCTATTT-CAAAGCCCACTTCAGTGTTAGTCATTCCTCAATGGCTTTTAGTtgaatgaatgaataaatgcatgaatgaatgaatgaCTCTGATGAAAGCATTATTATTTTTCATAGATCT-TGTTGTGAGTATTTAAATATTTTTTTCTAAAACCCTgtggctggaatcaggactaacagtcaggggtttccaatactctgtccagtgttctttctattacaccTTTGAAAGAGCTATTGTAAGAGCTCTGTTAGGGAACCAATAGGAAAGGAATAATTATTATGAGTTACTACCCTGATATAGCCAATAAATGGAGCCCATGTACCTGTGTAATTGGAGAAAATTAACAGCCATAAGCAGATCTAGGGCTTGAGATTTATCATGATCATTGACTGGGTCTGCCTTGTGACATGGGCTATAAATGAGGCTCGTGTTGTAAAGGAGATGTGTGAGTTATGCGGGTGTG----------AGGATGGAGGAATGAGCCAGAAACAGTTCCAATGATTGGAACTGCTTCTGCTAAGGCCATGGGTGACCTGATTGCCCTGCCTGTGTGTGTCCCCCCACTCCTCCACCTTCAACCCTGCCTTGCCTCATGCTCAGCTTGC------TTCTTTTAATCT--CTCCTAGAAGA--GTCCTTAAAAAGG--ATAGTTGAGCTGAACCCTGAA-AAACTCTCAAGCACTCTTAGAAGAGAGGGCTTAAGGATTTCATTAGG---CACCCAAACATCTTGCCAACCACCACCGAGACTGGTGGGAGGGGCTGGACTCCC----ACCGAGATTGATTGATCTTGA-CTGTCAATTTCGAGTCCTATCCCAGTTTCCCCACTTAAAGAAAAATCTGCCTCTTGATTACCTCCTCAAA-----CCCTGGATCCCACACAGATGGAGAAGAAAAGATGGCCACCTAGAACAGCTCCGAGGAGGAACAGAGAATCCTAGTTCCCCTGATAAATTGGCCAAACAAG-----GGATTAGGCTAAGCCGATGAGATACATG-CATTGCTTGCTTACTTGCAAACTGCTGTCTTAGTTATATGCTTATGTATTCTCTGTGGTTTATTCCATCAGCCGC--------------ATTTAGTAAGGGCTTGTTGAACTAAAGGGTTAACTCAATTTTTGTTGAATGGAGGCAAGAAACCAACTCAGTGACCCCAGGGGCCTCTTTGTTATTGCCTAAGATAGGTCACCATACATTTTCTTAT--ATACCCATAGGGAAGTTAGAGATACCCCATCGGTCCCCATTTCTTTGGTAAAAATTCAACATTCCAGATGTTCTGGAACTGCCCT--------------TGGCTCTTCTGTCTCAC--ATTGTAATCTGGAGACCCATATTTTTAGATCTACAAACAGAATTCATAAATAGGCAAA
s HiC_scaffold_1 109874577 1835 - 233722169 TATATCCATGAACAAAATATAGTATTGCTCACTAtatgatttcaaaaataagtaatGTTTCCTAGGAGAGCATTGGTACTACCT------GAGGCAC----CCTAGTAATGAAGAGTGCAAAAGTAAGTAAGGTAAAAGTGCAAATGGTTTCACTTTATAC-AACCAACTCTGtcatttgtcttgttttgttcaacAATATGTTTTAAAGTGTATTCATATG---Agacatgcatatttatt-------ttattttat---tgtttttgtattat----tCATCTTCACAGTGTCCATTTCTAAGACAGCGTATGCAACATAGGTACTCATCTAGTAAAATTTAACTATTGTGGATGAATT-AGGGTGAATCACATGATAACAGAAATGGACAGTTTGAACATTgctttatatttatgaaatacttGCAC-TGTAACTTCTTTGGCCTTTGCTTCTACATTTCCATTGAAATGCCAATGCTGTATAAGGCTTGTGATtatgtcttttgtgtgtgtgatgatgTCTTATGCTTTATTCATTCTAATCATAATGCCCATTCCAATGCTTATAAT-CCTCAGTAAATATCACTTGAATGAGTGAATGACT------------------TTCTGCTTAAA----TATTATTTCACTAAGGTCTAGGTTATGAGTACTTAACTGTTTTT--CCAAGACCATGTGGTTGGAATCAGAATTAACAATCAGGT-TTTCTGATACTAAATCCAGTGCTCTTTTCATTACACATT-GAAAGAGCTATTGTAAGGACTCTATTAAGGAATCAGTAGAAGAGGAATAATTACTATGAATTACTGCCCTGATGTATCCAATAAATAGATTCCATGTACTTCTGTAATTGGACAAAATTAAGAACCATAACCAGATCTTGAGCTTGACATTTATCATAATCATTGACTGAGTAT--TTTGTCACATGGGCTTTAAGCAAGGC-----TTGCATATAATATGTGTGAGTTATGTGGTTCTGTAGGGTTGCATGAGTGAAGGAATGAGCAGGAAGCAATTTC----ACTTGAATTGCTCTTGCTAAGGTCACTGGAGATCTTCTACTCACCTCTGAATATATGCACTC-CTCTTCTGGCTTCGACCACACCTTCCC----ACTGAGTTCTCCTCCAGTTCTCTTTATCTGCCTCCTAAGACACCTTCCTCCAAAAAGTTACACCTGAGTAGTGTTTTAAAGAAAGTCACAAACATTTTAGGAATAAAGACCTTATCAACTGTTTCAGGGTCCACCCTACCACAT---CAACTACCA-----------------ATCTGGATTGCTCTTGGCTGATATTTCTTACACTTCACCTGTCCGTTTTGGGACTTATCTATTTTTCTCCA-TCAGAGAAAAGTCCACCTCTT-------TCCTCAAAACAGCTCCTGTGTTCAGAGCAGCTGAAGAGTTTAGGATCACTACACAGCACAGCTGTGGAAAG---CAGAG-ATCCTAACTTCCTTGATCAA--AGCCAGGCAGGCTAGTGAATGAGACTTAGCAGCATTTCCATTTGTCATCATTTGCTCATTTCCAGGATCCTCTCTCACCCCTATGTTTTGTTCATCTTTATGACTTGTTACATCAGATACTTCTCATCAGACTAAGTTAGTAATTATCTGTTCAGCTGAATTGGT-ACTC-ATTCTTGCAATATTGAGTCAGGAA--------AGAGATCCCCTGACACTCTTC----CTGCTTGAGGTATACTCTTATAATTTTTCTCATGCATTCCCCAAAAGGTGTTTAAGAGACCTTCTGACTCCCCACTAGCATGATAAATATTTACCTTGCTTGAAGATCCATCCCTGCCCTAGATTATCTTTGCATAACTCATCTTcctcataaaatataatttggagACCAA-ATTGTTAGATCTA-AAACTCAAGACACAATAAGACAAA

a score=62095
s chr3            99930692 2114 + 160039680 CAGAAGTAACCTGGGGTATTGTATCCTCATTCA-GACAGATGGAGGAATTAACTATGATCAGTGTTCTTGTAGCAAATCACAAGCTGGAGTGTCGGGGAGACCCTTGAACTAACTGCAAGAACATGGATTTTCC-----ATGAC-----------------------------------CATTAACTAAGTAGCAGCTACAAGG-ACAGCCGCAGCAT-------------------TTGTTTTGCTTCCTCTGGGTAAGCCTCCTG---TGAAAGCACAGAAT-ATGATA-----CAAAGCTTAGTGGATAGGTAACATTTC---------AGATGAGGTTGGAGGCTGG------ATGAGTGGAGGAAAGAGCTACACTGGGTACAATTGCATCTTGGGAATCTGTCAGAAGTTTTAACGTGGAAG-GTAGTGACTCAACCGTGAGGGGATCTGAGAGAAGGAGAAGGAGGCGCAGTGCCCGAGGAAGTAGTTGATGAAAGAGCATCGCTTTCAATGTGTGCTGATGAAAAGAGAGCCCTTTCTTTAGGGTGAGTCCCTGATTCCAATTTTACATTTGTGGAGCAATTAGTAGGGCTCTGCTTGGCCCTCCCCGGTCCTGTCTGGTAGAAGAATGTCTCTGATATGTAATATTTGTTGTTTGAAAAGCCAAAGAAACGTGTTTCTTTTTCTGAGCCTGCCTTACTTTTTATGTTCTGAAGTTCACTTTGGACCTCGGATTTTGCTCCAAGCAATAAAACTGGTTGGAGAGCGCCAGCATAATGGAGCTGTAATTGTAGCCAACTGGTGGGGGCGGGGAGA--GTTAAGGTGTGTCGTGGTTTCTGTGGTTTCTCTGCAGAGTAGAATTCCCTGCAAAGCTTTTCCATGTGGTGTTTTAATAGCTGCCTTAAAACTCTCTGATGCATGGAGCAAAACTGAATTAGACTCATGTGCTAGATCGCTGGGATGGGCCAAGGACTCTGAaaaatgaaacaaaacaaaaacaaaaacacaacaaaacaacaacaaCCAATCAACCAGCCTAAGCCAGAGGCTAAATCTCCCAAAGAAGATCCTAAGGATGTGTCTGAAGTTAGAACCACAGAAGCAAGCATCTCCTCTAGCCCATGTTTGCAGAACTTTCTTT--GGAAAGCCAGCAACTTCCATTGTAGGTACTGATCAGATCCTTCTGTACAGTACTCAATAATGTACAAAATGAGGCTACAT-TATTTGTCCATCAGAGTCCCGCACCTTCCTTTGAAGGTTGCATTATTGTGTCTACTATTTTTTTTTTCAGAATGAGGAAACAGAGCCTTAAAGATTA-GCACAAGGCCATTTGGGTAAAAGACTGCAAGGCAGAACTGGATACCTCTTGAGCAATGTGCCCTTCCCTTCTGGCAGCACCTCACTAAT----TTTAGAGATCATGTTTAACATTTATGAAGACAAGAGAAAGCAGCCAGCCAATGAGTGCACACACAGTACAGCTATTTGTAGGCTGCTGAGTTCTCATTGCTGAGAATCAGACATTCACAACTTTGTCGAGACATAAAAGGGGCTCACTCTCTCTCTCTAACTCAGAT-CTCAGTG--------------TTCATTCCACAGTGCCAAGAGCAGCTGATAGAATAGCACACACTCAGTCAGCCTTTCCATGCCTAGCATGTGTTAAAGTTCTCTTTAGTGTGTGGTTTTGGCCACCT-AGTTCAAGAAGCATTTATGGAAAACTGTTATATGGTAAGTGTGTGGGATGAATATGAAGCAGTCTAGATGGCA----TGTCCTAGAACCTTTTCTGTTG--CAG----------AAAAGACCACCATTAGCAAGGC-TCCCTCTGAACGAATCCAGGAATTCTGGGAATCTTTTTTTAATATGTGGGTACCCTGAAGAAAAATAAAGTGTTCCAGGCGATAGAGGCATGGGGTTTATTTACTTATGTAATTAGCAAATCAACCCTTAAGACCCCGAGTCTAATAGGTG-----GTAAACTTCAT--------------------TACACCTTGAAGG-------------CGTGGTGGAG---------------------------------CCAGAAT-------------------TCAGCCCCAGGC-------CAGAAACTTCACTCTCTTTCCTTTTGTTCTT-----AAAAACTAGCCCTGAATGGACATCTGTGTTTTATATCTAGAGCCACAAAAATTAACCAGCTTAACGTGCTGTTCCCCCTCCAAACAATGGACCCATTT-GCACTTTTGAGGCATAGAAACAGATTTCACTTGTAGTGAGAAGTTTTCTGGGG
s HiC_scaffold_1 109877361 2221 - 233722169 CAGAAGTAGGTGTGGGGATTTCATACTCAGTCAAGGTAGGTACAGAAATTAAACTCTATCAATAGTCTCGTAAATAATGCCACGT------------GAGACACTTGCATTAACTGCAAGAAAAGGAGTTATTTGGCTTataacaaaacagactaaaatgagTTCAAAATAGCTCCTAACATTTATCAAGCAACAGCTATGTGACATAGATGGGTCATGAAAAAGGTTATTACTTGGTTATTTTGTTTCCCTTGGATAGCTCTATTGCCATGGTAGAACAAATTTATGAAATGCACCATATCCTAGTGCATAAATGACATTTGCATAAGgggagaaaagatttaaaaataacaaaaaatttatgGCAGAATAAATGATA--AGCTAATATTGAGTCTTAGAAATCTACCATAATTTTTAATGTGGAAAAGTACTGACTCGCCATTGAAGGGCcttgaggaaaggaaaagaaagat--gtatCTGAGAAGGAAGTTGATGAAAAGACATAGCTTTTAATATATGATGATGAAAGGAGA--TCTTTCTTTGGGGTGAGTCCCTGACTCCAATGTTACATTTGTGAAGCAATTAGCAGGACTCC-CTTGGCTTTTCTTGGTCTCCTCTGTTAGAAGAATGTCTCTGATATGTAatatttgtt---tgaaaaccaaaagaAGCTTGTTTCCTTTTGAG-GTTTGccttactttttatgttttgaagttCATTTTGGACCTCAGATTTTGCTCCAAGCAATAAAGCTGGTTGAATCATACTAACATAATGGAGTTGTAATTTTAGCCAACTGTTGGGGGTGGGGAGATAGTTAAGGTGTGTAATGGTTTCTGTGGTTTCTCTATGGAGTAGAATTCCCTGCAAAACTTTTCCATGTGGTGTTTTAATAGCTGTCTTAAAATTTTCTGATGCATGGAGCAAAACTGAATTAGGCTCATGTGCTAGATTGGTGAGATGAGCCAAGGactctgaaaaatgaaagaaaa--------------------------------caaccaaatAGTCTAAGCTAGAGGCTAAACTGTGCAAAGAAGATATGAGGGACACATTCAAATTCAAAAATGTAGAAGCAATCATCCCTTCTAACACATTTTTGCAGAACTTGCTGTAGGGAATAACAGT-ATTTCTCCAGCATATATTAATATGATGCTATTGCATGATGCTATCCAATTTACAAAATAATCATAGGTATATTTGCCCATAAAGGGTCATAATAATATTTTCAAGACTGTAATA--------ATTAGATCCATTTTTA-AATGAGAGAACAAAGTCATAAAGATAAGGCACAAAGCCATTTGACTAAGATAGAGT-AGAAGAAATTTGACACCACTTCTGAATTATGCC---TCTTTACATCAGAACTTCAATAACAGTAATTAGTAATTATGGTTAATATTTATGAAGATAAGACAA--CAGCTGGCTAGTATATG-AAGCATGGTAAACCTGTTTCAAGACTACTTGCTTCTCATCACTAAATATCAGACAT--ACAGTGTTATATAGACATAAAAGGAATgagctct-tttctctctttcaaatACTCTGTGATTCAAAGGGATTATTCTTTCCAACATGTTGAATGTGGCTGATAAAATACCATATTCTCAGTT-GCCCTTCCATGCTAAGCATGTGTAAAGATTCTCTTTAGTTTCTGGTTT--GCCATCTAAGTTCAGGAAATATTCATTACATGCTACTATATGTCAGACACAGGGGCAAAGTAGGAACTTGTCTAGGTGGTAGAAGTCTAGGAGAGCCTTCTCCACTGGCCAGCCCACTGCCTAAAATACCACCATCAGCATGACATCCCTTTGAATTACACCAGAAGTCACTGGGATTCCTTTTTGAAATGCAGCTATCCTGGAgagaa--aaaatacttca---------------------aaatactt---CAACT--TCAATCAACTATTAGAATTCCAAGTTGAATAATtgctataataaattttatttgatgcAAAAAGTGATGGGTGAATCTGGAAAGGATTGTAAGAGGCTGTGGAGGAGGTGTACCAAGGCGCTCTATCAAACATCACTCTATCAAACTTAACCTAACTGTCAAACTATCAAACACAAACTATCAAACATAAActttaattgcttttcttttgttcttatttcaAGAATTAGCCCTGTGT-GACATCTGTCTGTTAGGTCTAGATC----AAGATTAAT-------ATTTGTAGTTCATCTAGAAAACAGCCGAtctttttcatacttttaaaGC-------CGATCCCCATCTCTAACAAAAATTAGTCTGGGG

a score=108334
s chr3            99933144 7269 + 160039680 [encoded data, 8201 characters]
s HiC_scaffold_1 109880917 7367 - 233722169 [encoded data, 8201 characters]

a score=62259
s chr3            99940415 2555 + 160039680 AGCGTAGTCTGACCAAGTTTCAGTGTAGTTGTTGGTAGTTGAGAATACTGCAAATGTCTTGGCATTAATCCTTGACACACCGCTCTCTATGTTTTGGCAAACTAACTCTGCTAGCAGTCAAATTCCAC--ACCTCCCATCATTCCTTGCAATGTTCTGAATGTGTGCTCACCAGTTGAAACATTATGTGATACCTGGATTTAAAATAGTGGGTTGTTTTTTTTTTTTTTCCCCTTCTGAAGTGGTCAAGGAAATCCATGTCCAAGTATCAGGCCTGGGATCAATTAGACCCCCCAAAGGATTCTTTCTTCTTCAAAGATACCCAGTAAAACACAGAGATGATAACAGGGCAGTTTTGACGTTTAATCTGGACAGGCATTTTGACTTGGATGTGGGATAGCACAATGCTACAAATCCAGGGTTTGTTTAGAAAGCCATCCTTCTTCAACATGTGCTAGGGCTCTTGGTTGCATATTCTTCA--CTCAGGGGAGGTCCCTCTCACATCTGGCTCCCCCACATTCTTCCACTGGAGCATTTGGGCAAGAAGCCTCCCACACTTG----------GTTTTCTGAATGGTTCCAGAAGGAAAAAAAAAAAGCAGGGTGGAGCACCACAGAGATCGGGCCTTAGAGGCACCAGAAATTCATTACCATCAATCACTGGAAGAAGAATGACAAAGAGCATAAAGCAAGCACAGGCTCCTGGTCAGCACTGGCCCAGGACAGG--TCACATCTGGAGAGAGATACATTTGCATTTCTC----ATCTCACAACTGAAAAGACTTGATC---AGTG--------------------CCTGGGGGTTTGGGGGGCCA--GGAAATG------------TAAGTTG--CCATAGAAGAGGCT---------CAGAAGCAAGAGTCCTCTGGAGCCTCTGGACATTTGA-GCCAAGCG-GACAGCCTGCTCTTGAGTCCTTTTCTG------CATGCAAGGTATGTAGCAAATAGGAAATCT-CTACAGACAAGCTCCGTAGACGTAATTAGGAAGTCTTGCATTTCCTATTCCAAGGAAACTTGGCCATTGGGAAAAGTGAGAGTATAGTAAAGTAACTTGGC-CTCGGGGGAGTTCGTGAGCCTTGTTTTCTTCTAGCTCTCCATTTTGGATGAAGAGCTTAAAATTATCATGAAGACAATAAATGTAGTTACATATTCAT------TTCTACTTGTAGGAGATTCTCCTTGACTTTAAACCAGAGTCTCCTCTTTCTTGCTTTAAACAGAGTTAACCTGTGTGACTCCCTAGTTTGTTAGCTTGTGTTTGGTTAGTAGCCA-CAGTTAAAACAAGACCCCATTACAGTGATGTTTATCCATGAGCAGTAGATCAG-GTCAGAACCATATTACATATTTCCAGTGGAGACTCGCCATGTCTGTCCTAGCAAAGCCCACATT-CCTGAGTGATTCGCTCAAGGTTTCATTTGAATGGTTTGGTGTTATATACACACAGACTCATTTAAAATTGTGCAATTTCCCCTGAAATGTTGGAATTTCATCTAGCCATGATATTGTATACATGGCTATCTTTATTTATAAGCCATAGTCCTTTGAAAGCCTACTTAGTTTTCTCCG------CCAGAGGTATCCCTGCAATTCCTCTGTCCATTCACCTTCTTGCTTTGAAAACCATGTCCTGATCCCCAAGTACC-ACTCCAGGCATTCATCCAGGAATGTGAAGAGAATAGTCTCCATCATGTATAGTCTCGGGAGTGCTAGAGCGGTTATTGTTCTCACCACCCACTACTGAGGATGGAGATGATCGTTTGTCCTGAGCATAGCAGCA-TCCCCATACCCGGAGCTATTTAAGGATATGGATGCACATGAAAGTGGGTTTATAC---------------------ACTGTTAA-----GTTTGGCCAAATACTGGC--AT-------TGTACAACCATTATCTGGACAGTGCACGAGGGGACAGAAATGTGGATATTCTTGGAG--------CTTAAGAAGCATTAGGATTATAGACAAAATAAACAGTAAACATATAAAACT---AGGCTAGCGTGCAGTGGGTATTCATCAGACACTCATTAAAAGAATAGATAACAGGGGCAGGAAATAATCAGTGGGGTCC---GGAAGAGACAGGGGAGTGTCCAGAGAGCTAAAGGAAAAAGAGTTTAGCATTAGTTAGGGCATGGGAGAAGAGATTAGCATTAGCTA-AGGTGTGGGAGA-GGAGCCAGAGAAGT----TCTGAAGAGACAACTGGCACCTGCAGAGAAAGAGAAGGG-GTCGTGGACATTTTGATCTGTATAAGAACAAAACAAAACAAGAAGAAAAGTTACCTCACATCCCAA-TCTAAAAGGAAATATAAAAACTACCCATTTCATACAT---------GGGGAACCT--GTGTTAGGAAGTCTTGTAACTAGAAGATCTAGAGTTAGAAGCTGAAATACCTTAGATTGTGCCACAGGTAAATACACAGCTTCAAGTTTTCCTATTTTATCATGGACCC-------TTTCATTTGCCTCAATGCTGACTAATGTGGGAGGGTATGTCCTGACGTTCAAACG-TAGAAAAGGGAATTTTAGGGAAA--GAGCAGATAAAACAGAGCTACGGGAACTAGAGTGGTCTCTGTGAGCGTGAGGGAAATCTCAATGAGTATGAGAAAAGTCTCAGTGAA
s HiC_scaffold_1 109888795 2594 - 233722169 AGTGCTATCTGCACATGTTTGGTTGGATTCATTCACAATTGACAATACTGTGAATTTTATGTTATTAGTTCACATGATACTGTTCTTGCTACCATAGAAAACTCACTCTGT--GCTGTCAGAGTCAAACAGCATTGTGTCCTTTGTCATGATGTTCTCAATGTGTATTCTCTAGTTGAAACATTATGTGATACCTGGATTTAAAATACTGGAATTTTT--------------CTTCAGAGGTAGCCATAGAAATTCAAGTCCAATTTTCAGGCCTGGGATCAATTAG-CTCCCCAAAGGATTCTTTCTTCTTCAAAGATGCTCAGTAAAAATCAGAGATGATAACAGGGCAGTTT-GACGTTTAATCTGGACAGGCATTTTGACTTGGATGTGGGCTAGCACAATGCTACAAATCCGGAGTGAAGTTAGAAAGCCATTCTTCTTCAATATGTGCTGGGACTTTTGGTTGAATATTCTTCAACCTCAGGGGAGGTCCCTCTCACATCTGGTTTTACCACATTCTTCCAGTGGAGCATTCGGGCAATAAGCCTCCCACACCCACCCACATACCCTTTTCTGAGTAGttccagaagg--aaaggaaaggcagggtgGAGCACCATGAAGCTTAGACCATGGATGCACCAGATATTCATTAATGTCGATCA-TCGTGGCAAAATGATAAAGAACACAAAGCAAATGCAGGCTCCTGGTTGGCATCAGCCAAAGACAGAGCGCACATCTGCAGAAGTG---GGTCGCATTTCTCCTCGGTCTCTTCACACTGAGGACCTGTCCCAGAATGCTGTCTCCTGACATCTCACCCCAAGTGAATTGAAAACCCACTGGCAATGACGGTAGAGCACTAAGGTAGTTGAGAGCAGGGGCTATGGAAATCCAAGACCAAG-TTCTCCTGAGACTTCTGGATTTTTCACACCATGTGAGACACTGTGTCCCTGAGCCGACTTCAGTTTAGTCTCACATGATCCAC-GCAACCAGGACACCTGCCACAGGTAAATTC----------AAAGGGAACTCTTGCATTTACTTTCTGGAGGAAACTCAA--ATGCAGGAAAACAGATATCTGACAAAATTGCTTgttacatgggataattttagagtcctgtttcctttt-tccctccattTTAGAGGGAGAACTCAATA-CATCATAAAGG-AAGGCATGCACTTCAATACTTATATTTGCTTCCACTTGTAAAATGCTCT-TTTGGCCCTAAATCATAGCCTAGCTGATCTATCTTAAAAAGCCATTAACCAGTTTGGCTTCCTGGTTTCCCAGCCTGTGGATTATTAGGAGCAACCAACTAGAGTGAGACTTCACTGTTGCACAGCTTCTCCATAACAAGTAAAATAGTGTTACTACCACGCTACACATTTTCAGGGAAGACTTGAGCAATCTAGGCTAGCAAAGACCACATTGCCTGAATGCTATGCTCAAAGTTTCATTTGAATGGCGTGGTGTTGTGTATGCATAGCCTCGTTTGaaactatgtaatttaggctgaaATCTTGGAATTTCATCTAGCCATGATGTTGTATGTGTAA--GTCTTTATTCATAAGCTACAGATCGTTGAAAACCTACTTAGATTTACCCTAATTCCACAGAGATACCATTCCAACTTAGTTGTCCATTCACCTCCTCTTTTTGGAAACCATTTTTTGGTCCAGTAGGACCTGGTCCAAAGATACTCATAGAAATGC-----AAACAATATCTATTATTT-------------TGCTGCTACATTAATTG-------------ACAATGGGGTTGAGGGTAATGACATGAACTGACATAAACACCAGTCCCAACATGTGGTACTATTTGAGAATATGA----ACAtggaaatatgtatatatcattCACAATATGTTTTACCAACTGTTAATTAATGTTTTATCAATGATTAACTAATACATTTATGTTCAAGCACTATAAGTACAATggagacaaaggagaaaatacaaatacttgTGTAGACTCTAGCCTTGAAAAGCTTACAGACTggagaccaaaaaagaaacaaacatatatGCATCTAAAGTTGACACCTAGTAggtgttcaacaaatatttgccaAATAATGCAATA-------CAGAAAA----CAGTGAAGTACTTGGGAAGAGATAAAGTGTTGt--ggaaatttaaaagagaatgaaatga----------------gGGTGAAACGGAAGGCGTGACCcagagatgaagaaaatagagcTTCAGGTTTCCCATCTGATAGGCAAACCTTCACTTGAAGGAAAAGGATAGGGTGCCAAATAATTTTTGCTCCTTAAAATTATTGCCCTAGTTAA--------------TCCCATCACAGTTCTACAAGGGCATCTAACTGTT-CTTTTTTGATGCACAAAATAATGGAGGTACATAAAAGGTAGGAAATTAGCAAACTagaaaat-tgaaattagaaattgtaAGAACCTGAATTTC-------TTAAATACACAGTCTTGAGTTTTTC-ACGTTACCACAAACCCAGCAGTATTTCATCAGTGTCCACTCTT-CCGGCCTCAGATGGTGGTTCTTGACATTCAACTGTTAGGAGGGGACAGCCTAAGGAGAGGGAGTAAATCCAGCAATGCTGTTGGAAGGAAGATGG-CTGAATGAATGTGCATGGATGCTCAGtaaacatggtgaatgtttaaattaa

a score=48355
s chr3            99944766 1649 + 160039680 AGAAGGTGAGGGATCCAAATGCTCTGTCTTCAGGTCTCATGTTGTCCATT--------------TTTAAGACATTGCTGCTGCATTGGTTACAATGTCCTGA-TGGATCAAATACTCCCGGGTTTTGATCCTCAGCTCCTGGATGTGAGGACATATTTCTCAGACTTGCCCCAACAAGGACTCAAG---AGTCGTTTCCAAGAATGTAGAT-TG-TTATAGAGCAGTAGGCTGCTATGTTCTGGATTCCTAGCTTGCAAGTCATTCCTTACACTGTGCTTCAGGTAAGCAGTCCATGCAGTAACCATATAAGCCTTTATATTG--GAGGTGA-CCTTGTCAAAATAAAAAAATTGACAGATGCTT----CAAATATAGGAACAAATACTACGTGAAAT--TTTAAGAGGTTTGATATTATTAAAATGGCAGCTGTTCTGAGACCAGAAGGAGCAGTATGTCATGAAAGCAACAAGGAAAGGGGCAGGGTGGGGACAGGAAGAGTTCCCTGGCCTTTTCAGTCCTGAGTTTTAAAGCAAAACAAAAACAT-TCTGGAAGACCTGGAGAGAAGCCAAGCTAATGCCGTTATTCCATGGAGCTTAGGGACCCACCAGGAAATTACAGGCCAGTTAGTTTAACTTCACTTGTAGGGAAAGTATTAAAGACTGCAGCAGGAGATGGAGTGGGAAGCTGCTCAGTGAGCTAGGGCGTGATTATGGCAAGCCT----------------------GGATGGCCATGTCCTAGGAACTTGTTGAAATGCTTTGAAGCTATTACAGCCAGTACAACCTTCAAAGGATACAGTGGAGCCCAGAATCTGTGCATCCTT-----------CCAGCCCTCCTGGGACACCTATAGAATATGGCCCAAGTACAGTCTCCAG-GTCCAGACCTCTAAAGCCACTATGAAAAAAGGGAGAAAATAACCACTGGGTAGAAACATTTTGAAAACTGGAACCAATTAATACAGCTTGATATTTATAAATGTAAAATAATGAGACTTGGAATCAAATGTAGGAATATTGAGCTGTAACAAAGAAGTACCACCTTGGGACTATAAAAAAATCACCCTAGGAGTTATAGCATCGAAATTT--GGCTTTGGATCTGACAT---TCGACCAAAAAATAAAAGATGTGG-AGAGAAAGTGTGCAAGGAAATCTTCACCTAGTAGAAGGTTATGAAGAATTGCAACCAAGTGAACTTTGTCAAGTTGATACAAAGAGCAGTCCAATGAACTTGGGGCCTCATATGCTGAAGGATGCCAGAGCAGCTCAGGAGAAAAAGACCTGCTGGGCAGGACCAAGCTGGGCAAGGAACTGTGGAAGGTCAGGGCTCCATTGCATTAGGAATGCACTTCTCGGGGGGGGGGGGGAGT-----TCAGATTTAAGACCTGCAGTTCTATTTTTAAGGAAAAGCACCACTCAGACAAAGGTG-TCCACAAACCCCCCATTGCTGGCCAGCTCTCCTCCACCCTAACTTTCAGGCAACTAACCACAACTACATGGCAAACAGTCATCAGTCCCGAGGAATGAGGTGGACATGG------------TTAGCGCCAAGAAACT--------------TGAGGGTCAACTGCAGGCTGACTGGCCATTTTGTTTGGAG---------AGTAGTCAAGACAGGGATCCAGTCAATATTTCTAAGATATGAGTGTCAGTGGAGGATCAGCTACAAAAAAAAAAAAAAAAAGCAAGATTCTGCT
s HiC_scaffold_1 109892530 1682 - 233722169 AAAAGATTCATGATGCAAACATTATATCTTCAGGTCTTACTCATTCCATCACGCTTTACTGTTCTTCAGAACATTATATTGGCATACATTGGAGTAGTATGCCTGCATTCATTCCAC-----TTTTGATTCTGATTTTGTGGATATGCATGCACACTGCTCAGGTGTTTCCCAACATATATTCACAGTAACTCACCACTAAGAACAGAGATGTGCTTATAATCTACCTTGCTGTTCCTTTCCAGATTCCTAATATGAGACTCAGTTCTTAAATGATGCCTCAAACTAACAGTCTGTTCAATTAAATTATAGGTCCTTATTTTGTGGGGGTGGTCCTTgtcaaagtgaaaaa--tgaaaaattctttcttcacAAATAGGAACAAATAATATGCACAAACATTTAAGAAGTCTGAAGTTATTAAAGTGGCAGATCTACTGGGAATAAAAAGAGCTGTATGTCATGGAAGAAAcgaaggaaaaga-------gagacaggaagcaTTCTCTGGCCTTTTCAATccagtgttttaaaacaaaacaaaaaaaaatctggaaaaattgGAAGGTAGCCAACCTAATGCCGTTATTTCATAGAGCTTAGGGACACACCAGGAAATTACAGGCCAGTTAGTTTAGCTTCACTTGTAGGGAAAGTATTAAAAACTGCTGCAGGAGATCAAGTAAAAGGATGCTTAGAAAAGCACAGCTTGATTAAGGCAAGCCTGGCCAGAGTGGTTTTTGGAAAGGGAAGGTCATGTCTTAGGAACTTGTTGAAATTCTTTGAAGCTATTAT-GCCAT--CAGTCTTCAAAGAATACAGTGAGGAGCAGGATCTGCGTGTCTCTTCTGCAGTGCCTCAGACCTTCAGGGATGCCTACAGAACACGGTCCACATTGGGTTCTTGGCAGCGCGGGTTTGGAAACCACTAtcaaaata-gcagaaaatgacctc--gacag-aacatttttaaagctgGAACCAATTAATACAacctgatatttataaatgtaaaataatgagaCTTGGAACAAAATTTAGGAATATCAAACTATAACAAAGAACTGCTACTTTGGGACTATAAAAAA--CAGTCTAGGGGTTATTGTGCCAAGAACTGGGGCTTCGGA---GACATTTCTCACCCTAAGAAGGGAAGACAAGGCACAAAGAACAGACTAGAAAATGTT-ACAGAATAAAAAGCCATGAAGAA-TGCCACCAAATGAA-TTGGTAAAAT--------------GTATAAACAACCTCAGGCTCCA--------------CCAAAACAGCCTAGCAGAGAAA---------GGCAAGTGCAGACCAGTCAGAAAAGAACAGAAGGTCA-GACGGCGGTGCTTGAGGAATGGGCTCCCAGGGTGCAAATATGTTTGCCTATCAGATGGGAAACCTGAAGCTCTATTTTCAAAGCAAAGCACAACTTGAGCAAAGGCATTCCAAAAAATCCCAATCATGCTTCAGTTTTTGTGCACCCTCAGGAATAGGCATCTGACCAAGCCCACACGGCAAATGGTTTCCTGTATAGAAGCA-GAGGTGGACACAAGGAGGTATGGATCTAATACCAAGGAGCTGGGAtttggcagcaggaaacccaactATACAAGAACTGGCT-TGTTGGCTGGAGGTTCTGGGCAGGGGGCAAGGCAAGACGCTATTCAAGAATTTCAGAACATAGTTATCAGT-GAGGACCAGCCAT--------CATAATGAAGCGAAGTTCAGCT

a score=41678
s chr3            99953540 1771 + 160039680 ATCTAATTATTTCAGCCAATCCAAAGGCCTGCTTTTATCCTTTCAGTCCTCACTAGAGCCACAGAGGAGTATGTCAGGGGACAAAAAGGTGTGACACAGTCCCAAGTCACACCAA-GTCCTACATCCTTTGTGAGAAGCTGATCTTGTATTTCATGCTCTCAGGTTCAATTTAGAATGTC---AGGGAGCAGGGA---------GAGAGACCCTATCTGGATTTGATGCAAGGGACTAATATATTACCTTTTGTAACTAATAAAATTTCAGAGGCCAACAGCAAATTTCTGATTTGCTTTTC-CTCCAGTAAAATGTCTGCTTTGAATTATGCAGAAAGAATTCTTCTT---GCCAACTTGTTTCAATTTCCCACACAAAACCATC-ACAGAACACTGTCAGGGGCTTCCTATAGTGGCTTATTTTAGGATTCTTCAGCCATTGGAGAAACACAGGAGcacacacacacacacacacacacacacacacacacacacacacacTT---TGCCCTTTCCTTGCAGAATACAGAGGAAAATGTGTTGTTGAGGCTTTTGTATGGTGCTTTCCTTTTCCAAAGGCTGGGATGAGTATTACTCTTCAGACTCAGAAAAGAAA------------CTCAGTCTTGCCAGAATCCCATTTTATGAATGCAggcccgccctgcacggaggtggag-aggccatcgctgtgtgatgtg--atttaagaggtgctggatattctgcctgtccaaaaatagcccccacacccgcctgtTGAGCTCAGACAAACTGTCCATAAAACCCTACTTTAAATGAAATGAACCTGCAGTTCTGGAATGTTAGCCCATTACATCCGCTATGCTTTCAGCATGTA-TTTATGCTTCGGGAGGAAAGCTAGCTCTCTCAAGGGGCTATGCATGTGCCCCAGTGGTGTGAGAAGAGTTAGCAAGACAGAGGGTTAAGGTAGCACTGTAAGCCAACGGAAGCAGTGTCAGCACATTGCCGTGGTGGGAGCATGTTAAAGCGCAATTCAGTGTCTCCCATGTCCATTCACTCAGTA--TTTTTTAAAACAGTGTTTTCTGAACC-------------AAATAGTCAATGATCTTGGATGAAA-TCATCAAGAATACAATAATAAgg------------gctagagagatggctcagtgattaagcacactggctgctcttccagaggacccaagttcaattccc--agtacactcacagaacctgaaaatcatccgtg---------attccagttcctgggaa----tctgatgcccttacctgaatttcactgcatgcatgtggtgtacagacatagattcaggcaagca---ttcgttacatgtaaaataaaaatgaaTACTTAAGAAGCTCTGGAACTATGTATTGGGAATGGTTGTACAATTGTATGAATGCAAATGGAAATTTTTATTTTCAGCCA---------TAACATAAAGGAAAGGGTTAGAGGGTTTTTTT---------------------TTTCTTGTTTTCTTTTTAACCATTAAAGGAAAAATGCCAAACACAGAAACAT------------------GAGTCGGGTTTTCCTATCTATCATTCATGTGATTCC---TTTAAAAGGTGTGTGTGTTGGGGGGCGGGGGGGATCTCTCACATAGAATACTGACCACCTTGCATAA------------ACTTATAAGCCCAAATAAGCAGGGGAAAGAAAACTGTAAAACGGCAGACATCGACTTTAAATACCTCTAGAATCACTTGAAACTTGGGG---TACTGAGAAGAGAAAA---------GGTGGGGTTGGTCTTGATCAGGTATTGTGACACGACTGTGAGATCCGGGGCCCC--TCCCAAAACAGACCTGCTTCACTCTATAGCCAAGCACA-CCACCTACAT
s HiC_scaffold_1 109897440 1831 - 233722169 ATCTAATTATCTAAAGGATCCCCAG-----------ATCTTCTCATTCCTC--TGGAGCCACAGAGGAGCAGAGCAGAAGGCAATGATATGTTACTCAATCACCA--CCCACCACTGTCCTACGTTGTTTATGAGGAGCTGGTCTTGTAT-----GCTCAaagattcattttttaatatctttgggaagaagggaaaacaaaatgacaagtTCTATTTGGATTT-ATGCAGGGGGCTAATACATTAC-TTCTATAACTAATAAAATTTCAAGCACTGACAGcaaatttctgatttgtttttttctctagtaaaatgTCTGCTTTGAATTATGCAGAAAGAATTCTTCTTCCTGCCAACTTGTTTCAATTTCCCATGCAAAACTATCCACAGAACCTCGTCAGGGGTTTCCTATAGAGGCTCATTATAGGATTCTTCAGTCACTgcaggaataca----cacacacacacacacacacacacacacacgtgcacgcacacacacatgcacacccttTTTTTGgagcaagcaaaagaaaatataatggtAAGATTTGTATGTGGTACTTGCCCTTTCTGAAAGC--AGACAAATACTGTATTTGTCATTGATGAGTAAAAGAGTCTTTCATTCTCACCCTGGGCAAATGTCCTGTTTGTGAATATAAGCCTGCCCTGTGTGTAGGTGGAGCAGGCAATTGCTGTGTGGTGTGTGATTTAAGAGGTGCTGGAAATTCTGCCTGTCCAAAAATAGCCCC---ATTTGCACATTGAATTGAGGCACAATGTCCATAAAGCCCTAGTTTAAGTGAAATGAAACTGAGTTTTCAGAATGCTAGCCCATTGTATAACCTACACTTTCAGCATGCACTCTCTTATTGGAGATAACAGCAAA--ATCCTGAGAGGATATG--TGTGCACGGACGGAAAGAGAAGGATAAGGAGTATCTAGGACCAATGC----TTAAGAGCC-----AAGC----TCTGCATAACTCT-------TAGTAAGTTTAA----AACTAAACCTCTCCCATAGAATTTCagtcagtgatttttttaaatcaatattttctgGAACATGGTGTCTCCTAAGATAGGCAGTGCACTTTGCTGGGACCCCTAAAGAATACAACAATAATAATATCAACTCACATTTGGAAGATATTTTTAGAaccaaata-----------ttttcaaaca--tcaattttttttccccaacaaCAACTTTGGAA---GACAGACTTCAGTGTTACTATACGTTACAGCGGGTGAGAAAAGTCTTGAAGAGGTCAAGTGACTTTCCCCACA-GCCTGGGGGTAACAGCCTCAGATCTTCACATGGAAATCTCGT--CATTCTAACCCCAAATTCATGCTT-----GCTCTATCACTTCAAGCTCAGCAAGACATAGTTTCTGTAATAAAG-AagttaataattttattcttatttaaatgTTTCTAAACACAAAAGCAAGCTCCAGAAGTTTTCTCTAGTGAAATTATTGAGCAAGTGTTTCcccttgtc-ttaaaatttttaaaggcacAATGCCAAATGCAGGCACATGTCTGGCATGAGAAATTGGAGTGAGAGTCTACTA---ATCATTCATTTGATTCCCCACCCAAAAACTTagaacattaataaaataatgaaat---tcaatTAGAATACTGAATACTTTGCATAACTTATAAAACACAATAATAAACCAAATTCagtagggaaaataaaaagaagaattagCAGAAATTAACTAGCATATTCTCTAGAAGCACTTAAGACATAGGGGTATTTTGAGAAGAGACAAAAAGTTGAGGGAGGGTCTGGTCATGATTAAGT----------GATTATGAAATCTAAGatttctatattaaaataaatcttcTTGGTTCCCTAATTGAACATATCCACCTGCAT

a score=38930
s chr3            99956200 1746 + 160039680 CTTGCTGAACTAGTGAAGTAGCACAACTTACTACCCTAGGCTTCCTGCAAGGCTGATCTGGGAAAGGGAGTAGGCGTGGCTGCATGTCAGC-----AGGCATCAGGCATAGGGTGCCCTTTTATAGGGCACAG-GCTGCTGAGTATCTCTAGGAGATGTTCATGCTACTTCTTA--------AACCCAGCATGTGTTTTATTGGTTGCTTATGCTATTGGTTGCTTACCATGTGTTGAC-ACAAAGCTAGCACCAGCCTTTAAGTTCCTTGTAATCTAATGAAAAATGGA--TAGAAATGAGCGAGCTTTTTACTACTTGATAAGCAAGAAGTTGTTAGTGACACAGAGAGTACACAGAACACTGCCTATGTCTTTCTTAAGTTTTGACAGAAAGGGCT-AAGAAAATGTGTTGAAATTGGAGTGGACAACTTATGAAGTAATGCTAAAGGA-------------ATTCTTAGCAA--------------------TCAAGCAAACAGAACAAAGTA----------------TTCCAAACAGTGGGCTTTCCTGGCAC-TGTAGGAGGGCAAGTGGAAAGCACAGCCCTGGGA--GCTCAGCAGGTGGATGCAGGCTGGGTTATAAAGGAGCTCTACTGTACTCTGCTATAATGTGCTGCACAAAATTTAGGCCTGAGAAATACAGAGGATCTAGGAGCATGGGAGGGCCTCTCTGGGCAGTGACACT----GGATGGAGGTGCAG---GAATTTTGTGGGAGGTTGGAAGGGTAGCACCATCAACAGTGTTTAAATATGGTATAGTATTTTAGTTGTATGTGTATGTTGTAAACtattttaatataatagcaatataatttagttataaaaattatagataatttGGAAAATACAGTAAAACCATAGGTCATA-TACTGAAAGATACTTAAATA-TATCTGAAATACTATACTGCGTGGAGCCCTATATCTCTTTTCA-AAAATGGAAATTATATGTTTTCTATTTTTTCCATGCGTTATAATGTTAAGTGTTG------TCTAAATCCATATTCGGGATGTGTGATGGAAAGTATGCTTCTATTCAGGAACATATTTAACTCCTCACATCTCTGCTAAATTTATACTGTTTACCAATACTTA------taattgtttccttatgagagttttcataaactggaaattccaggtcaaagtctacaaatctttccaatctcttgacacatattgtcaaaatgcaccagaggtaatttgagccaattcacattctttataacaattccaatataacctcgccctcttcaacactaaatttctaactc----tcaatttgataAACAAACTATTATGCAGTTGGATATGTGACCATATTTTTATTGATCATGTCTTTTGAAAAAGTATGGAATTTATCA-------------GTGTGATTTTGTTCTCAGA-CTCTCTGAGATAAGGGGATACCCCACCAACTGTTGGAATTCAGGATGGGGAATGTTGGCTTTAAGTAATTTCAAAGCAAACTTCAAGTGCTATGAGAGATA-CAAAAAGGTTATCCAGC-------CCAATGTAGCCTCA-CAGCATACTTCAAGATGAGCAGACACACAGAACTAC---TAAAATTTCAGCTGCAGGAGTGGACACAAAAGAAATACAACTGAGACCTCCATCAATAGGACTAGGGACAGCAATCTCAGGATTGGGAGTGTGGGAAG--GGTGGCATG---CTCTTTGCTTTGAGCTTCTCCA-TTTCTATCATC---TCACCTCCTGCTGCCAGCAGCTCTGAT----GTGGCATTCTTTGACATCGTCTGGAGGACCTGTT-AAAGGTGCTGAATCCAGTCCAGAC-----CCCAGTGATGGG
s HiC_scaffold_1 109899364 1809 - 233722169 CTTGCTAAAATAGTGCATTAGCATTGCTAGCTTTCCCTGCTTTTGTGCAAGGCTGG-CTGGGA----GATCAGGGTTGGCTGGATGTTAGCCTCCCACATACCTGTCACAGGCTACC-TTTTATAGGGAATAATATTGCTGA--AGTTCTGTGTGATTTGtatattaattcttttatttagtaACTTAGTATGTCTT----------------CTTTTCATCCTTTACCTTGGGTCAATTGCAAAGTTAATTTTGGCCTTCAACCTGCTT-CAGTCTAGTGAAAAACAGAGATAGGAATGAGTAACTTTGTTAGTGTATCATAAC----AGGTTTAAAAGGGTACGACACATATACAGAACAAAccctatatatttctaaaattttgaaagaatgatTTTAGGAAAGTGGCTTGAAAGCTTAATGGGAAATTTATGAAGTAATGAGAGAGGACAAGAATTCTAGGATCCTAAGGAAGGGAGCCAGCCCATGCAAAGTCAGGTAGACATAACAAGGCACAGTATGAACAGGAATTTCCAAATGGAGGTTATCCC---CATGTGTAAATAGGCAACCAGAGGGAGTAGCCAAGAGAAGGGTTGTTAGTTGGCT-CAAACCAGGCCATA--GTATACCTGCTGTACCCTGCCAAGGAGTGTGGTCTACCCTGTAGTCACAAGGAGCATTGAGAAATTATGA----------------CTAGGCAAAGAATATATTAGAATCAGAATACAAAAAGAATTCTGTGGGAGGTTTGAGGGATTGTACTGTTAAAAACAATTAAGTGATATATAgtatttaaatt--atgtataaCTTTGTAACTGTTTATATAC-----CAATACATGT----------AATTATAGAAAACTTGGAAAATATAGAGAAAGCATAACTCATAGTGTAGACAAGTGCTTAAGAAGTGTTTGGAATAGTCTACCACTTAGACTTGTGTACCTTATTTTACAAAACGGAAactatatatgttttatatcacATCTTCCTTTTCACATAAAATGTTACCATTTTCTAAATCCATGTTCAATATATGTAATAGACCTCATGTCTCTATTAGATAATGTATTTAACCACTCCACCTTTTGTTCAATTTAGACTGTTTACCAATACTTATGACCTTGattgttttttataaaaaaattttatgaagcAGATTTACTGGGTCATAgtatataaatcttttaaaactctTGGCATGCACTGTTAAAATTCAATGGAGCTAATTCTTGCCAAATCACATTCTTTCTCTCAGTTCTAAGTTAACCACACCCTcttcagcattttatttttaaatcttagtcAATTTGATAAGCGAAA-ATTGTAAGGTTGGACATGTAATC--ATTTTTATTGGCTATGTTTTGTGAA----TATGGAATTCATTAAAGTGCAATGACTATGtaactttattttctgatttttttgagataatgGGAGGAACCCTCTACTGTTGACATACAGGACGGGGAATATTTGCTTTaagtaatttcaaaataaactttaggTGTTGTGATAGATGTCAACGGGGTGAAACATCGTTGGCACCTGTACAACATCAGCAGCGTACTTCAGGAGGA-CAGATGTGCAGAGCAGCTCATAAAGGCTGAACTGCAAGAGAAGCCTCAAGGAGAGCTTAAACAAGGCCTAAGGCAGTGGGACCAGCGATGGCAGTTTCAGACAAGGAAGTACGGAGAGGTGGCTGCAGGCAACTCTTCACTGTGAGCTGCTCTACTTTCTAACCTCCCGTCACCTTCATGTGCCAGTGGTCTAGGTCTAAATGGGTGCCTCAAACAAC--TCAAAGAACCTGTTAAAAAATGTGGACTCTAGCCTAAATGTGGATCTAGTGATAGG

a score=50459
s chr3            99959411 1091 + 160039680 AAGATGTCATGATGATAACACACTCCTA-----------CACACCTAAAGAAAAGTGCTT-------------GCCTCTCCATCCTGTACACTGTTGTATTAGACCC---TACCATTATACATTTT------ATATGGACACAAAG-TACTCCTTAATGGACAGAAGGTTTTTCTCTAAATCC---------------CCACAAATGTTTCTCTAGGAGGCATGTGCTTTTTGACATGGACTGTATCTGTTAGATGTTCAAAATACCCATCTCTCTGGGGAGATTCATTACAGTTCAAATTATACATGTCTGTTAAAGCAAAGATCAGTTCTACCTTTCACATATTTGTTATTGCTGCTTTCTGAAACTTCCTTCCAGCCCCAAAGAGGTCTTAATCCCTGTCAAATGTTATTAAGTCACTAGCTTTTATATAGTCTTGAAAGGGATTGTTTATTTAACTTCAGTGAGTCCTTGTTACTGCCAAATATTATTTCATTTCAGCGCAGATGTAAAGGGTCCAATGACTGGAATTACTTCACAGCCCTGACACTGTGGAGAGATGGATACCAGTTTAATTATGGACAGCTGAGAATAATCTGGGAGTCACCTGCTCTGGATATTTATCATCATTATGAACTTCTCACCAGGCTGTGGCCCGAACACTTTCATAACGTCCCATTTGTGTTGGGCAGACATTATGATCTATACAGAACCTGCCTTGTCTGTCACCTTTGAATTTATGGATAGACAATTTAATATTGCTTGATTATTTTCTTTTCCTCTTCTTGGAGTGAGAAAATGTGTTTCAGTCATTCCTGTTCCTTTTCCTTTCCTCTCACCCCCCAACCCCCGTCTCAACGGCCTGCTCCCACTGCTGCCTTTGTCCTTCCAGCTGCTTTTCCAATTATGCTTCATTGGAAATTATTCATTACTTAAAGAATGTGACCTGGGTAGGCTAGACGCATGAAGGAACCAGCAATGCGGAGACTGATATGCAATCAGCACTCAATAAATGCAGTGGAAAT----GAAGGAAGAGAGCAGAGGGAACCAGAAGGAGGCTTTGAAGCTACAGAGTATTTGCCATAGACTGCTTCTATCTGACC--TTGTAGACATTGTAAAGAAAAGCAAGGTTTCTCTTTCT
s HiC_scaffold_1 109912171 1112 - 233722169 AAGTTGCCGTGAT--TAACAGAATCATGTGTTGCTAATTCACACCTGAAGAAAAGCCCTTCTTAATCTTGGATATATCATCCTTCCATACATCATCACATTAGTTTCATGTGCCTTTGAACATTTTGCAgttatacaaaaacaaaaacacttcctAATAATCAAGGTTGTTTGCTTTAACTTCTTTATAGAATAAGTCCAGCAAACATTCCTAAAATACTTCTTTGTGTTTTGACGTGTACTATACATGTTAGATGTTCAAAATTCACATCTCCCTTGAGAGATTAATTACATTTCAAATTATACGTGTCTGTTAAAATGTAGATCAGGTCTACCTTCCCCGTATTTGTTATTACTGCTT-CTGAAACTCCTTTACAGCCCCAAAGAGGTCTTAATCCCTGTCAAATGTTATTATGTTACCAACTTTTATGTAGTCTTGAAAGGG-TTGTTTATTTAGTTTCAATGACTCCTTGTTACTgccaaatattatttcatttcagcACAGATGTAAGGAGTCCAATGACTCGAATTATTTTACAGTCCTGACATTATGGAGAGATGGATACTAGTTTAATTATGGACAGCTGAAAATGATCTAGGAGTCACCTGCTATGGATATTTATCATCATCATAAACTGCTTGCCAAGTTGTGCTCTGAGCACTTTCCTAA-GTTCCATTTGCATTAGAT-GACAATGTGATCTATATGGGACTTGTACCTTCTGTCATCTTTAAATTTATGAATAGACAGTTtaatattgc----ttattttcttttccactt---------agagaaaatgtttcagtcattcatgttctttttc--tccctctttttttctgtttctctcctt----gCCTTCTCTCATTGCTACCCTTGTGTCTCCAGCTGTTTTTCCGATTATTCCTCGTTGAAGATTATtcattatttaaagaatgtgaatTGGATAGACTAGACACATAAAGGATTGAGCAATCCAATAACTAAAATGTAGTTGGCACTTAATAAATGCATAAGGAACAGCAGAGGAAATAGAGCAGAAAGAACC---AGGAAGTTAGAGAATTGTAAAGCCTGCTTCTTAGAATTCTTCTGTCTCCTCAGTTACAGAAATT------AATagcataatttctaatttt

a score=219409
s chr3            99961630 10640 + 160039680 [encoded data, 11662 characters]
s HiC_scaffold_1 109915552 10640 - 233722169 [encoded data, 11662 characters]

a score=5864
s chr3            99970941 250 + 160039680 AAACCCCGAGAAGCTGGAAATCGGCCAGAGAAATGCCATTTTGTGCGTGTGTTTTATTTTAAAGGAAAGGCCATAGGGACAGACCAGGAAATTACTGGCTGGTTAGTTTTGATTCAGTTGTGGTTAAATTCTTCAGAAACTATTTTAAGAAGTCAAACAGA---------GGAAGGGCAGGGACCCTGTGTGGAGGGCT---CCTGGGTGGTTCTAGGAAA-GGAATAACTTGCCTCACTAACTGGCTGGAATTCTTTGAGGC
s HiC_scaffold_1 109893063 242 - 233722169 aaatctggaaaaattgGAAGGTAGCCAACCTAATGCCGTT---------------ATTTCATAGAG-----CTTAGGGACACACCAGGAAATTACAGGCCAGTTAGTTTAGCTTCACTTGTAGGGAAAGTATT-AAAAACTGCTGCAGGAGATCAAGTAAAAGGATGCTTAGAAAAGCACAGCTTGATTAAGGCAAGCCTGGCCAGAGTGGTTTTTGGAAAGGGAAGGTCATGTCTTAGGAACTTGTTGAAATTCTTTGAAGC

a score=11457
s chr3            99982249 388 + 160039680 TCTCGTTTCAGATGGTAGAAGAAAGAACAAAATCAGAAAAAGACAAAGGAAAAGGGAAGTCTCCAAAGGAGAAGAAAGTTGCCAGTGCCAAGCCTGGGAAGGGAAAGAGCAAGGACCAGCCTGAGGCCACTGTAACAGTGAGGAAGACCACACAGTTAAAACGGAGGGGAGAAGATGACGAGGCCAAATCCTATATCGGTCAGTGTGTAGCTCCACATGGT-GTCTTCCACCTCTTGCTTTATAGACCAGAATAGGGCTTTAAGAGTCACCTCTATAATTACACACTATCATTCTTAGCCTTTCTATTTT----AAAGCCACATATGACCTATGCTCTGTGGCACTCAGATTGAAAAAAATATTTCTGTTTGCAATCCATGT--ATGGTTTTAGC
s HiC_scaffold_1 109936479 393 - 233722169 TTTCCTTCCAGGTGACAGAAGAGAGATCTAAAGCAGAAATGGATAAAGCGAAAGCAAAACCTTCCAAAGAAAAGAAGGCCCCAGGTGCCAAGGCtgctaaaggaaagggaaaagagcaGCTCGAGGTCAGCACGACAGTGAAGAAAACCACTGAGTTAAAACGGAGAGGCGAAGAGGACAACAAGAAGTATTACATTGGTCAGTGAGCTGCTGCTGTCGGTCGCCTTTTCCTTTTCGCTTT-TGCCCTGTACCATAGCTTGAGAGATCATCCCAGTAACTATGCTTAATTTTTCCCagtcttttcattctttacaGAATCATAAGTTACTTACTTTCCATAACACTTTAA-TGCAAAATGAATTTCTAACAGAAATGTTTCTAAATGTTTTTAGC

a score=64500
s chr3            99983269 2512 + 160039680 AAGAACGCAT--CTTCTTGACTCAAACTTTTCACACAATCTTTCTGTCTTCAACAGATCAAATAGAAC-TTCGTTC-TGTCATAATTGGCTGACCCAAAACTGAGTCATTTTCAGGAGTTACTCATGATTTGAGTGATTCACAGCTGGTTTTCTCTGAGTCCAGACAGAACTACCTGTTACTATCTTTATTTTATTTGTTTGTTATTTGTAATCAA-----------------------TAGACTTGATT-----------------------------------CTTGATTTCTTTCA-ACACTTTTGATCT----TTACTGTGTTTAA---ATTAAGTAAGAGAAAC-------------TGGCT-------------TTTTTATTTTTTTGCATC---------------TTTTATCAGTTGATCCCTCTCATGTATCTCTACTTAAA---GATAATAAACCCCAAAACAATGATTCTGTGCTCTCCATAGTCAATACCAATGCTGACCATTTTCAAGGTTGGGGAGAATTAATTACAT--GAACTTAAAATGTGAGCATCTGTTGTATGGCATGTACATTGGCTTTACTGAGCTGCACTGTGCTGCACTGTACAGTGTAAAGTTCTTGTGTATCATGCATGGTCAGCATGAAAGCAGGACGATTTCTGTCACACC-CAGAACATCGTAGTCTAAGAGAGTCTCATGTTTTAATATTCATAAGGAACATTACCAGGAAAATGAGAATAGAGAAC-TACTTT-ATACTATGTATGTCTTCAGAAGGAATACAGTATA---------GCTGCCTCACCATTGATGCATGGTGTTCTCACCACCCTGACATGAATTCGTTCAGTGCTATGCTACAGAGCACATCCA----CAGTATTTCCTTATCCTGTAAACACCTTTACTTATAAAGTACCAGAAATCTGGAGCTACTTGTAACTCGGGAGTTAAGCCAGATGTTGCTCAACTGAGATTAGAATCAAAGGAAACTAGTTACAGGTTAAACTCTGACAAAAGCTCAGGCAC-CATGTTCCATGGCCGCAGACCCCATGTGTGTTGGCCCTCCTAATATGTCTATGTCTCATTTGCAAACATGATTTAATATTTTATAAAATGGCCACAGTCTCTTTACTGGAAAAGCAATAATGAAAAACAGTCAACAGGCCTGTGTCCCAGCCAACTGCCTGGGTCTTGGCAAGCCAGAGAGATTACGAACATAAGCATAATTGAGTTTCACCACTGGTTTGCCTGGGGACAACCTGTTCTACCTAACAATGAGAGCTGACCTTCTTTCTGGTATTTCCAACAGATGATGAGCCAGACGATGGTGCCCAATATTACATTATTGTTGTGGGCTTCAACAATCCTCAGCTATTGGCCATTATGACTGAGCTTGGCATTCCTATAACCAGTGTGATTAAAATATCTTCAGAGAACTATGAACCTCTACAGACACACCTGGCAGCAGTCAGGCAGCAACAGGAAGCTGTCCTTCAGCCAGAAGGTACACACTTGGCCTCGGAACTCACAGAGTCCATCAGTATTGCCCCTACCCCTCAA--TACAAAGGCAATCTGCTGTCTGAAACATGGTTATAAAGCATACACTATATTAAATCCTTTCAAGAC--TGATTTGCTATATATTCTGCTTATATCAGCCAAGAGCCATAAATTTGGCAAATTAAAATCATACTCGGTGCTCGTATCCCTGTGTAGTCACAGAAAACATA-ACCCCAGGTCAGAAGACTTAGTTACTCAACTGTTCTCAGTCTTTTAGCTGAAAGCAAGGGTGGTAACACAACTTTATTTTTCAGGAACTTTTGACCTGCAATGTTTAGC---CAAAGCCTGGGCTAGATAAATATTTGTTAATACTCTTTTCTTTCAAATGACATAGTCACTGAACAGCTCTGACAAGATCATACAGTtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtATTcatggagaacagaagatggtgttggaccatttggagctggagttgcaagtggctgtacataacctgacatgggtgccaggaaccaaactcaggtcttctggaagaatagcaagtactctcaactgctgagttacctgttcagTTTGGTTTTACATGTTAGTTATTCTACATATATTACTAACTCATTGTAATAAAAGTCAGAGAAAACATTGTATCTTCCAGACT-TAAATTGGGAAATTAAAGAGATGAAGCCACAGCCATATTATTGTCCAGTCATTTTGAGTATTGGGGTCTTTATCTCAAGG-AATGTGCTAATTTACTTCTATGGGACAAAAACCAGAAAGCTACTGTGACCTTCAGGTAACAGCACTGAGAATCAATGCCAATCTGTGATTCCAGGGG-CCAAGTTACTCTTACTATATGTGTTGATATTGATGTTA-TCATAAAT---ATTTTCACCATGCCTTTTAACTTAC--AGTCAAATATCAATTTC----------CTTCTATTTT-------TCCCCAAAGTTAGAAATCACTACCTTTGATaata------------------------------------------------------------------------------------------------------------------------ttaataat--taccatttattgggtgcataatttgggatctaagctcaatgctaagagttttaaatatattgatttttatagttttcccaacattccaaggaagtatattttatcG
s HiC_scaffold_1 109937064 2476 - 233722169 AAGAACACCTAGCTTCCTAGTCCCAACTTCTCCCACTTTCATTTTGCCTGAAAGAGAGCAACTAGAATATTCTTTCATGTTATACT--ACTGACATAAATATAATTTGTCCTAGGTAGCCCTTT---------GTAAGTCATTACTGCCTTCCT--GAACCTAAATCAAGCTACCTGTTACTATCtatgttgtatttatttattattttaaataaaagatttcatatttttagcaATTTTAGATCCTATTTAAATGAAATAGCAGTGAGCTCTCCTGTCCTTGAACTTGAGTCCTCTCATAGATCTCTGCTCTAAATTCACTGGACTTAAGAAATTAGGGGGGGGGGACAATATgaatacatcagctagtgatttattactgtttatttcttttctttgaaagtatgtactatttctgcccgttttctcttttgttttgtctttctttaaataaaataagaagttgCAATGTGATTAAT--------TCCCTTG-CAATATCAGTGTTGATTTGTT-----gttatagaagaaaaattattttgaaacttaAGAATTGTTCATCTGCTGTATTATTCATGAGTTAACCTTAATGTCCT------------ATTATACAATGTAATGTTTCCATGTATCATGCAATATCAACATTAAAGTATAGCAATGATTCTCATCCCACAGAATATTATATTCTAAAGTAATCTcatgttttaata--------aaatagtataaggaAGGCAATA-TAGAGGGCATACTtttatgaaatatgtattttaaatattagtgcAATAAATGCATATTTGTTACATAACCAATAAT-CAAAATGTAT--ACCAAC-TGACATAGGTGTGTATAATATTTTGATAGGGAGTTCATCTATATTCAGTATTTCCCTATCCTGTAAACACCTCTACTTGTAAAATACCACAAAGCTGCAGCTACTTGTAATTCAGGAGTAAAGCCAGATGTTGCTCAAAAGAGATTAGAACCCAAAAAAA--AGTTATAGGCTAAACTCAGATAAAAACTGAAACATACATTTTCCATGACCATAAGCCCCTTGTGTATTTGTCCTTCAATTACTCCTATGTCTCATTTGCAaaagtgttttaatattttgtaaaatggCTGAGGTCTTCTTACTGGAAGAGCAATAATGAAAAACAGTCAACAAGACCATATTCCAGCCAACTGGACCATTTTTGGCAAGCCAGGGGGATTACAAATGCATGCATAAT-GTATATAGCTATTAAACTGGCTAAGCACAACCTGTTCTCTTTTACAACTACGACTACTCTTCTTTGTGGTATTTTGAACAGATGATGAGCCAGATGATGGTGCCCAACATTACATTATTGTTGTGGGCTTCAACAATCCTCAGTTATTAGCCATTATGACTGAGCTTGGCATTCCCATAACCAGTGTGATTAAAATATCTTCAGAGAACTATGAACCTCTGCAGACACACCTGGCTGCAGTTAAGCAGCAGCAggaagtttctcttcagccagaagGTATGTAGTCTGTTATACAACTTACCGAGTCCTTCAATATTACCCATAGTCCTTAAAGTACAAATGTGATTTGCTGTACAAAACATAGCCACATAATACTTTCATTATTAAATCCTTTCAAGACTTTGATTTGCTATTTATTCTGCTTGTATCAGCCAAGAGTCATAAATTCTGCAAATTAAAGTCATACTCTGTGTTTGTACTCCTGTGTAGTCACAGAAAATATAGACTGTAGGTCAGAAGACTTGGTTGTCCAACTA------------------------------------------CATTTCTCAGGAACCTTTGATTTGTAACTTCTTACACAAAAAGCATGGGCTGGATAGA----------------TTactattgaatga-------atgaatcagttCTTGCAAAAGTCCCCAATGGCCCAAGTG-------------------------------------------------------------AGAT----------------------------------------CACAGCCTGG------------------------------------------------------------------------CAGTCTTGCCCTACTTG------------------TTACTGCCTTATTGTGATAAA--TTGCAGGGGGTAATTTATCTTCTTGGCTGGGGACTAGGAAGCTGAGGAG-TGAAATCCCAGTCACACTA----CCAGTCACGGGCATCCTGGGAGTGTTCATCTCAGGGAAATGTGCCAGTCTTCCTCtgtggaa-aagaagaagaaagttacTACTAC---TAGGTAACAGAATTGAGATTCACTGTAAACCTGTGTTTTCAGAAATCTCAGTTCTTTCTCCCTTATGCACTGCTTTTATTGTTATTCATTAATAACACTTGCATAAT-CTTTAAAACTTACATAGCCACACCCCAATTTCTGGAgcactactttttttttcaagtgctcttcagatttcaaaataactacCCCTGGGAATGGATGTGGGGGAGAATCAAATTAAATCATATACAGGTATACATTCCCCataaggaatgtgatcattatgtacatccaaaatgtaccaataaacttaattttttaaaaagaaatcactatCCCTGATAATAATACCATTTACTAGGCACATGTCTTGGG--CAAGACACATGGCTAAAGGCTTTAAATACATTGACTCGTTTAGTTTTCACAACATGCCTAGCAAatatgttttattg

a score=24728
s chr3           100004089 1004 + 160039680 ATATTTAAATGTAGACATAAAAAACATAAATATTTTAGGTAAACTTTCAAGTCTAACTTTATGGAATTCTACTATCAGTTGACAGTCAGCAGGGGCAACTATTCAGAAAAAATGTCCCTGCTGTAACATGACCAAAAGCTAACTAGAGCATAAATTACTCTTAGGCCTGTGAGAAGTGTATCTAGGTCAGTTTTTTAATATACAAACTTGGTAAAGCAAATACAAACTTGGT--GAAGGCATGATCTGAGGAAA-------TTCTTGT-TCTATGTAATATCAGGACAATGGTAGCTT--AGCATTCTTTGCTCCCAAAA-----GACCTTATCACAATCTTTCTGGGCCTAAACTGTGAGATGGACT---CTGATGAACTTATAT-----------------AGTAACCCATTTTGATTTTACAGTTGTGTCTTCCCACTTCAAAAAGTTCTCAAAGTTACGTTTCTGTATTT---------------------------------------------------GCACTTTGCTAATACTTTACAGACAT--CTTATCATACATATGACTCACTACATCAAGACAAAGTGGGGAGAAATACAATACTTTGATTTTATATTAAAACATTTTGCTATTATTAGATATAGAAGCTGAAAAATTGAAGAGAAAAAATTCCATCAAGGAACTTGAGGTTTTCTGGAAGTACTTGGAACCAATCCTGAATAATGAGAAACTTGAAATACATCTCTTTGATGTTGCTCGTCTCCAGTACATGGTCAAGGCAACATATTTTCCTTCTGATTGGTCAGACAATGAACAGATGGTGAGTCTATTGGTCAGCATGA-----------------GTGA----GTGGTCCATTCA---CAGTCACTCATTCCACAGCTGTTCAGTAACCACTGGTAACAATGACTTTTGTTGGGCTCTCTCCTCTTTCAGACAATGATGGTGACAAAGGCCACTCTTGTATCATAGCCTGATTCTGTAGCTTTTAGTCTATAGATTAATGATAA----TAAAATATAGCAGATGC-------------TGATTCTTTCATTAAATTACAATTGGCTCTGGTTCATGTATTGGTAATGATCTAAGTAATAATTAAAAT
s HiC_scaffold_1 109945751 1030 - 233722169 atctttaaaattaaaaagtaaaaaaagaa----------taaattcttaaGTATAa----gtgtgaatattttattattttataatcagtATA--CAAATGCCCAAAGAAAACAGTGCTATT-TAACATGATCAAAACTTAACTGAAGCATAAATCATT-------------------GATCCAGATTACTTTT---------AGCCTtgtgagaagaaata-aaatatagtcaaaaggccttttagaaaaaaaaaaactggtcttATATCGATGCAACTTAAGAGTGATAGAAATCTTGAGTATATTTAGCTCCCAAAATGTATGACCTTTTCATAATCATTCTGGGCCTCAATATTTAAATGAAGTGGCAggataaatttacatttaatatgaACCTTACAAGTAACATCTTTTGATTTCAAAATTGTACTGTTCAGTTTCAAGAAatctttaaatttacatttttttattttcttagtgtaggtttgcagtacataatgattatatttgttGGGGGTTTTTTGCATTTT-CTGGTATTGTACAAACATTTCTTACTCTGATTGTGACTCACTATGTCTGATTTTAGTGG----AAAttcaatactttaattttgtagtaAAACGTATTGCTATTATTAGATAAAGAAGCTGAAACCTTGAAGAAAGAGAGTGCCATAAAAGACCTTGAAATTTTCTGGAAATACTTGGACCCAATCCTGAATAATGAGAAACCCGAAACAAATCTCTTTGATGTTGCTCGGCTTGAATACATGGTCAAAGCAGCTGATTTTCCACCTGACTGGTCAGACAATGAGACAATGGTCAGTACATTCGTTAGTGAGAATACCTAGTTTCAACATGTGATACTGTAGTCCTTTTACCTCATCCATTTATGCCACAGATGCTTACTGAGCACTGATCACAAAACC---------------------------CAGTCATGG--------------------TTATGGTCTGATTCCATAGCTCTTA---TATGAATTAATGGAAAAGGGTAAGATAGAGCAAATGAAGATAAATAACAGTGATTCTT---TTAAATAACGCATGGCTTTGTTTCATGCCTCAACAATG-TTGAGCCAGTAATCAGAAT

a score=14107
s chr3           100008336 430 + 160039680 GCCGCCATTGGAGAGCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTG------ATGAAGAACATCAGCAA---GCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTGAGCATTGTGATCGCAGCCATGAGGAAGGCGGTGCCCAAGAAAGATTGATGAACCCTCCCCCAATAAAGATCGTTCCTACAaaagaaag-----gaagaaagaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaaga
s HiC_scaffold_1 105027082 401 - 233722169 GCAGCCACTGAAGAGCAGCAGCCATGGGTCTGCACTATCCCATGACCACAGGCCTCGACACTGGCCGCAAGGTGGAAAGTGTAAGGTATAGCTGCTGTTTACCAAGATATAGCTGCTGCCGCTGGCGCCTCACCAAGCACATCAAGCCTCTGGGGGATGTGATCTGGGAGGTGT----------------------GTGCACCATGGAGCTGCTCAAGGCCTCCAAGGACAGGTGGGCCCCCCAGTTTGTCAAGAA---ATTGGGGATGCACATCCATGCCAAGAGGAAATGCCAGGAGCTGAGCAGCATGCTGGCTGCCATGGGGAAAGCAGC-CACAAGCA------CTGAGCCCCTCTCC-----------TCTGTGCAGAGTGAagcttttcaagaaaaaaaaaaaaaactccagcaacaacaaaaaagtaaaatcaaaa

a score=13590
s chr3           100008339 397 + 160039680 GCCATTGGAGAGCAGCAGCCATGGCTCTGCACTGCCCCATGGCCATGGGCCTCGACAAGGGCCACAAGGTG------ATGAAGAACATC---AGCAAGCCAAAACACAGCTCGCCCCACAGGCTCCTCACCAAGCACACCAAGTTCGTGCAGGACATGATCCGGGAGGTGTGTGACTTCATGTCCTATGATTGGTGCACCGTGGTATTGCCCAAAGTGTCCAATGACAAGTGCGCATTCAAGTTCATCAAGAAGAGGGTGGGCATGCACATCCACACCAAGAGAAAGTGGGAGGAGCTGAGCATTGTGATCGCAGCCATGAGGAAGGCGGTGCCCAAGAAAGATTGATGAACCCTCCCC----CAATAAAGATCGTTCCTACAaaagaa-----aggaagaaagaaaaaaagaaa
s HiC_scaffold_1 141553014 386 - 233722169 GCCAGTGAAGAGCAGCAGCCATGGCTCTGCACTATCCCATGACCGCGGGCCTCGACACTGGCCACAAGGTGGAAAGTGTGAGGTATAGCTGTGGTATACCAAGGTATACCTGCTGCTGCTGGCGCCTCACCAAGCACATGAAGCTCCTGGGGGACGTGATCTGGGAGGTGT----------------------GTGCACCATGGAGCTGCTCAAGCCCTCCAAGGACAGGCGGGCCCTCCAGTTTGTCAAGAA---ATTGGGGATGCAAATCCATGCCAAGAGGAAATGCAAGGAGCTGAGCAGCATGCTGCCTGCCATGGGGAAAGCAG----CCGCAAGGACCGAGCCCCTCTCCTCTGTGCAGAGTGAATCGTTTCAGGAAAAAAACtcccagcaacaacaaaaaaagtaaa

a score=36283
s chr3           100009131 1746 + 160039680 ggaaGCATTCGGCTCTTCC---AGGGAACCAC---AGGCCGTGTTGCCCAGCTGGTCCCTCTAATTTTATATTGGTCCATTTGTAAGTAATTGTTGAGCATCTTCTTCATGCAAAGGCTATGGTTGGTACCCAACTGAAATAATC----ATAGCTTAGACCTGTCTCTTTGAGTGAAAAATCCATTATTGAAGATAATGGGGAAAGTCTACCCAAAAATGACTTAGCAATAAAACTGATTTCCAGAAAAAAGGACCACTTAGGTTTAACATTGAATGGCAAAGTCTATTTTAAACTCAGAATTGCTTACTGAGATTAAAAGTAATGAGGCTACTTCATGTAGAAGCAGGCTAGGTCCATGGTG-GTGCATTC-TTACCTATGAGTTGTTAATAACTTCATATCTGCTTTAGAAGCCA-CCAGTATGTGAGACTTTCTTTCTCCCTGCATGGAGGAAAGCATTTGCATCCTCTGGCTCAAACAAGCAGCCTGTATGTCTGCCGAACTAAGGTAATGAAAGCTTTACATCAAGTCACTATCAGTCAAAGTAAGCTAAGAACTCATGTAAGACATCTGAAACACCTCAAGATATACTCTGGCTGCTGAAATAATTTGCCAGCCTTTGGCATATCATTTGCTGATGAATTTTAAAATGAATTACATAGATTGTGCTAATGAATCATTGGGCAGAAACTTCACTGTATTTCCTTTAGCAATAAAAATGGAAACTGTCTTTCTGTGCCAACATATGGATAGGCACAGAATACCTG-TTGGAATTTAACTCAAAACTCCCTGGTCCTGATGTGAGTGT-GTGAAGCCC-ACAGTCAGGTGTGCTATGATGAACAGAGCCAAGCATTTCCCTGGATGTCTGCCAGCCTATGAGTCACTGGCCCCACA-GAGGCTCTC-CATTCCACCTTACCTCCTCAACTCAGATGTAGGAGGGGCCTGCTTAGTGCTTCTATGCCTCCTAACTGACAGACACAGCCATCCCAGAATTTTTCTACTCCAGGAAATGAAAGCTTAAGTAATAACCATAGCAGATCTATAACTGGCTTGCCAGCTCATAAAA---------ACAGTAGAAGCAGTAATTT---GGATTCCTTCAAGCTTTCCTGCTAACAGTACCACAGTGAAAACCAGCTCA-GGAAAAGGAAAGAAGGGAGGAAAAGGAGAAATCTTGATCACAGATACACGCTCCTTCGTACTTAGACACTACACAAATCCAGGTGAGGGAATCCACTGTGCTCATCCG--GTTCTTAAAGAAATCATCAACTGCTCGATTGCTTCTCCTCAACCAGAATCATCTAACAGGTTTTAGGATTTGAAACGCCGAGCACATGAAACATACTGTAGATGC------------------------ACCA-----------AAACATTAAACATTAT-GGTACTGGACAGC-GTCAGAACCT-------------------CTGTGGCCAACATGAAGGGCATGAAGAATTTATGTTTGGAAACTCCCTCACCAACACCAGAAATTGGTATTTGGGGATCTGGAGATTCGATTTCCTGTAAAAGAGAAATAGGCTTTTCT----AGAAAGTTACACATATTCTATCTATTCT-GATAGCATGACAGCAATGTTGAGTTGATTCTCACTGGTTCTCTCCCTTATAGCTTGCATTGGGCACCGAGATCTTTGAAAACATTGCCTGTTTGATGTACGATAGCCTGGACTGGAAGAGGCAACATCATCACTATTTGCAAAGCATGCAGCTCATCAATGTCCCACAGGTGGTCAGTGAGAAGACCGTGCTAGAGGCAATCACAATCCCAGAGGTAAG
s HiC_scaffold_1 109947648 1652 - 233722169 GAAAGTGTTCAACTCTCTTTAGAGAGAGTCAGTTGGGGCTGCACTGCCCACTTGATCCTACTGATCTCCTACCTGCTAATTTACCAG----------------------------GGCTTTGGTCTGGGTCCAACTGCAGTAATCTTTTAGAGCTCAGTCAAGTTT-GTGGATTGAAGGTCCCACCATTGGGGACAATGGAAAAGG------------------AG----------GGTCTCCAAAG-------CCA-TTGAATTGAATACTGAGGATCAAAGTTCATTTTAAacttaaac------------aaaaaaaatgataaatctaCTAGTAGTAACAATAGACCAAATACATATAGTGTTCATACATTGAGTTTAAGTTGATAATGACCTTGTATCCAGAGTAAAAGCCAGCCAA-----GAGTCCTTCCTCCTCTGTGGATGGA---AATTACTTGCAACCTTTGGC--AAACAAGCAGGCTGTATTCCTGCTTTACCAAGGTATCAAAAGCTTTACAGCAAACAAATACCCACCAAGACTTGCTAATTTCTCATGTAAG-CACCTGCAACATCTCAAGTTAAACCCTGATTGCTGAAATAATTTGATGATCTCTAGTATAACACCAGCTGTTTGATTTTAAGATGAATTAACTAAGTTAAGCTAAA----CATTGGGC-------------TATTTTCT---------------AGAAATGTATTAGTATACCAGGATTT----AGGCAAAGAATATCAGATTAAAGCTTAACTTAAAAACCCTCAGTCTTAACCTGTGCATTGTGAAGCCAGATGGACAGCTGTGCTAGGATGG-CAGAGCTATGTACTTCTCTAGACTTCTGCCAGACCATGATTCCCTGACCCCACAAGAAGTCCTCTCCTTCTGCCTTACCTCTTCCACTCAAATATGGGATGAGCCT-----------------------------AGAC-CGGTAACCACTATGTTTTCCTACTTCTGGAAGTGAAAGCTTAAGTAATAAATGCATCTGATCTATG-CTTGCTTGTCAGCTCATAAAACCTTCAggtataaaagaaacaataatctAATGGAATTTCCTAGTGTCCTTTACTAAATGTGCCAGAG---------GCACATGGAAAAAGGGAGGGAGGTAAACAAGGAAGAATATAGTGAACATAGCAGTGTTCCTGTGTG----GATGATACTTGAAGCTTGGCAAGAGATT--GTTTTGCTCCTTCATAGCCAGACAAGAAGccattttctgtttg--tgttt-gacTAAGTCAAAATGGCCTAATATGTTTTAGGAActgatatataaaaaatataggcCATGCTGCAGAAGCTAATGGTTACGTTTTCTCTGATTAACCATTTTCAATGACAATGATTGGACATTTTCAATTCTAGGCATCCATAAGGACCTGTGAAGGGAACAGTCTGAATTGTGATGAACAAGAACAGTAAGCAAGGCTCACAGACAAAGACTCAGTCACCACAGCTGGAATCCAGTTGTTCAGAATTTG--------CTTTCCTATAAAAATTTGACAGGCTTAGCTGTTAAGAGAGACACAAATAGTGCATCTATTCCCAATAATCTGAAACTAATAAC------ATTGTCATTAATTCTCTCATTTGTAGCTTCATTTGGGcactaatatttttgaaaatattgccTGTTTGATGTATGACACCTTGGATTGGAAAAGGCAACACCAGCATTATTTGGAAAGCATGCAGCTTATTAATGTCCCACAGGTGGTTAATGAGAAAATTATCTTAGAAACCATACAGATTTCGGAGGTAGG

a score=17175
s chr3           100012840 588 + 160039680 ATATTCTGTGTCCTTTTTGCTTTTTTCACACCCTCACTTTTTAGGATCCTGTGATGTTTGATGAAAACGCTTCTTTTTTATTATTTTTCTTTCAGCCTCCACCATCAACTGCTCCAGCCCCCACTGGGAAGAAGAAAGCACAGTATGAGGAGTCGCATGCTCCACCAACAGGCATGTGGGAAATCA---------------------------------------AAGCTTAAGTACTCCCCTCTCGCCATCCTGTTCATACTGTAGTCAGCAACCCCTCCCCCCTACAGTGTCTACATTGATTGGTACCT---CACAGTTCTAACTTATGCACAGAATTTC--AGGAAGAACTAGAGAACGCATCTTAACTGGGCAATGTCACTTTCTGCATTTGACAGTGGCTTTTATCATCACAACTGAAGTAGACATGCGGTATTACAATGACCTGCTGAATCCAATTCCAGAGGAATTTATTTCTGTGTCCTTGATACTGCACTGCATGGTGGAACAGGTGAGTAGAGGTTGAGGCTTCCTCCCTGCTAGCAACCTTGACCAA-------CATCTCTCTTCACTTCCAAACTTTAGGCCGATTTTGTAATTGTCCTCAGAACACTTGGAATGCAGCC-CATTTAT
s HiC_scaffold_1 109950343 609 - 233722169 ATAGTCAGAGTCTTGTTGTATCTAATCATATCAGCACCTCTCAGATGGCTATCTCAGTTG-------TGTTTATTTTGAATTGTTACTCTTTTAGGCTTCACAACAAGCTGTTCCAGGGTC---TGGAAAGAAAAAACCACAGTCTGAAGAGCCACAAGTTCCACCACCAGGCATGTATGTAGTCGGCTGCTAGAGGAGTAACATCATGAGCTGGCCCTTTAAGGAAGTATAATGACTGCCCTCTA--TATTCCTTTTAGAT--------------CCTCTCCAGCTAGGTTGCTACATTTGTTAGTGCATAGTCATAATTTGCAACTCTGCATGAGATtttgaaaggagaaatggagaatATGT-TTAACTGGGCAatgttattttctgtattttatagtGACTTTCATCATCACATCTGAAGTAGACATGAGATACTATAATGATCTGCTGAACCCAATTCCAGAGGAATTCATTTCCGTGCCCCTGATACTGCACTGTATTTTAGAACAGGTGAGTAGA--CTCAGGCTT-ATACCAGGTTGTATCTTTAAGGaagtttcttcatttctctttgcctctactttttaacactattttaaaatgatactcaTAATACCT-GAATACATCCTCATTTGT

a score=71631
s chr3           100020648 3795 + 160039680 cctgagtgacattcctgcagtgctccagttctgagcagtgaggcagaaacacagACAGTCAGAAGAGTGCTTACTGGA-----TGTACATGTTGGGTCTTTGG-TTATATTTCAGCTTATTTTACTTGCCCCTCCCCCCGAAGCAAActtgaacaaggcatttaatctttctaaacctcgctttgccctcattaaggtaatgatta------tctaaca-----cttatcttaccatttgacagTTTTCTATATTTGAAAAGAGAAATGAGGGCTTGGCCTGAAGTCCCCATAAAGTTCAAACTGTG----TGGAATTGGATTGACCATGTGAGT-CACACACCTCTGCTTTATC-CTCTAGCAAGCGGGAAATGCTTTTTGTGCCAGGTAGTGACCATGAGGCTCAGGGGAGTGAACGTGTGTACAGATGTCCCACA--GTACCAGGAAGGTGGCAACCACGCTGCTTAAATGTATATTGAATCCAAAGTTTTATGAGCACCATCCTCAGAGCCTAACAAGAAAGAACAAATACTTTTAAAAAAATCAGTATTGTAACTTTTATTA---------TTATTCCTAGCC----------TATGTTATCTATTTTAAGGCAGTTGTTAAAATTACATCTAATGCGAT-TACGGATCGCAAACATTTTCTCCTTAATTTTTGC-ATCAGTGATATTTTACTGCCATTACCACCAAT-------GTTTCTATG----GAGCTGTCTCCTCCTCATTAAGAGCAATGGGAACACATGCACATCAGCAAAGAGCTGAGTACTAACCCACTTCTTCCCCATTGCCTTTCCTCAATAGGTTGTAGCAACTGAAGAAGATCTCATCCCGCCAAGTTTGGTGGAGCCAGCCCCCAGAGCAGACGGGTTAGACTACAGAATCGCAGCTCACATTGTGTCGATCCTGCCTTCACTCTGCCTCTCCGAAAAGGAAAAGAAGGTCCGAACACGAGCGAGCCAAAAAGCTTTTGTACTTTGAAACAAACAAAGTGTGCATTCTCTCATTAAATTGATATTATTTTAATTTAAACAGAATCTTCGTGAGATATTCTTAACTGAAGGAGAGAGTGAAAGCAAAGCCCTGCCCAAAGGTCCCCTCCTACTGAACTACCACGATGCGCATGCCCACAAGAAGTATGCACTGAAGGTAATAACCAGGACCCTCCCTCTCGTAGTTCATGTAAGTAGGTGTGTTTGTGATTCACTAGTTGGGGGAATCTCA-TTGGATGATCTTACCAACCAAT--GCTAATGAG--ATCTCATGTATAGGATAGATG-AAGATGGAGGCTCAGA-AACAGGAGTAGACAGGAGC-----AAAGTATGTCAGCAAAGAGCACTTGGCCTAATCACAGGGGTCCAGTTAACCACGGGCTTGATTGTCACCACCATTACATGTGCATTAAAGCTTTATAATCAAGTACTTAAAAATtaactgagaggttaagagtacttgtggctggtccagaggacccaaggttaatgtattaaacccatgtcagagaactcagaactggggctaactccagctcccgggcctctattctggcctccaggggcatatacacagagacatacacatatgcacataaatataaaTGATTCTCGAAAAAAAATCATGGGCATTTTCTTTAAATATCTGCTGCTATGAAAGACTAGTGTAGGCCAACAAAGGATTTCAGGAAAGACAGATAAATCCACTCCAAACTTAGGCTGCTTGTCACCAGGAATGGAGACCCACT-----TGTGCTCCAGAAACTTCTGGAAAAATGAGAACTAGATTTT-GGACCTTATTATAAATACGAA-TTTGTCATCCTCAATTACTTGTGATGTTCCCTGTTTCCAGAT---GAGAGTGACGATATCACGTTTGGCCTTCTCCACACACATAAGGCATGTGACAGCTCTCGTTAGTGTCTTCTGTCATGTTGCTTTCCCTGtttctttttcttttcttcttttttctttttctttttttattttttttGGTAAGGACCAAAAGAATTTTGACCCGGTTCAAGTTGAGCAGGAGATGCAGTCCAAGCTGCCACTGTGGGAATTCCTTCAGTTCCCTCTCCCCCCTCCATGGAACAGCACTAAACGACTCGCCACTATTCACGAGCTTATGCATTTCTGTACGAACGGTGAGTATCTTGCTTTG-----GCTGATACCCAATTTAATTAATAG-----------CCCTTAAATTGCACCCTTATTCCCAAAAAGCATTTTGATCATTGAAAGGCCTTCCAGGGG-------------------CCTTG-GCGATGTCACTAGCCATGTGGAAACTCTGG------CGCGTAACATTATGCACTTTGATGTAATAGATTTTCTTTCCATTGTGTTTTCTT------AA----------------TCCCCTGAGCCCCA------CAGTTCCCCCTGGTGTCATTAGAGACGATGC----AATCCATCCTACTTACCAGGAGGAATGGTTCGTGTTTCTGCAAAAACTTAAAAATGAATAAGAACCTCTTGTCTCAAGTTACCATAGTCCCTTTCCCAGAAAatagacaaatagacagacagacagataggtagatagaAACAGATAGAAATAAATAGGCTTCACCAAGGAATGGAGCCCTTTATCATTGTAGAAATCCACACAAGTCATATAGCACAGTGGCATTAGCTGTGGAAGGAGAAGCAAAAGCCCGAGCAGGAGACTTTGCCCCAACTAAGAAAT-TATCAGTCTGGAGTCTCATACTC-CAGCCTCAAGCACAC---------AGGTCGCTTTTGACTTCTAGAACTGTGCT------CAAAGGAAACTTGAACTATCCTTGT--CTCTAGCCTGACTCGATAGATTGGACACAACA------------CTTATATGTGTCTA---------TCTAGCTGT------------ACTGATA----------------AAATGCAATCACTGAATGATTCTCAGTAGTAGATTGGGAAGTCTCCAAGAAACTTGCATCTGCACCCCATCCTGAGGAGCACAA---AGGAAACCCTGTCAGAAGCAGATCTCCACCGCTTAAGTGGGAAGCTGAGTTTCTACTCAACATTTGACAGAAGATGTCGAAGCCTGG---ACCATCTCTCTGTTTATCCAATCAGATGGTTAT----------------------------------------CCTGGGGCTTCCCCACTAGCT-----GCAATGTGGCTA-GGGT----GAGAGAACAGAAGAGATCATGGGTGGTGGTTTTAAATACAAACCTC--TCTTGTCAGTGTTCTTTTTAGAAGCGAAGTGTTCAATTCTCTCTGCATGTCTCTGCCTCCCAAATCCTTTTGAGAGCTTCCCTAACCGAGAATCAAGAATGTCCC-TCATCTG--TCTTTACAAAGCAAGTTTTTCAGAACAACCATA----TATCTTAG--CCATGCTCCCTTCGGTGCTGAGAAATGGCATGCGGCCAATTGTTTTCT-TCTCTATACTTTGAGTCACTCCACAGTTCTCCTTTTTTTTTCCAGGTTAGAAAAAAGAAATAGAAGGTCTGGGTCATCAGAATTTGGCTGGAGTGTCTATTTAGT-----ATATTGTGAGCACTTTGTTAGATCACCCCTGCATAGGAGGGCGGGAAGGAAAGAAGAAACGGTGTG-CTCTGGGGGGCAGGAGAGCAATCGAAAACTCCTGTCCAATGCTATCCTGAGATTGAATTCAGAAAACAGTATTTATATCCAGAGATTTAATTTCATTTTTAAtactggcaattgaatctatgactaggcaaatgctagacagtttccctaccagtgagctacactgtcagcTACAGAATTTGAAATATGAAGATATAGTATAGAATCATAAAAATCTCCTGGCTCAAATGAACATTGAGACTTACCTAGTCCAAATGTATTTCCATCTCATAAAAAATCCGAAATCCTGGCAAGCTAAACCATTTATTGTAGGGTTATAATAATAGT-GTCGACCCACAAGGGAAGTTCTGGCCCCTGGGTGGC
s HiC_scaffold_1 109955142 3491 - 233722169 CCAAAATGTCATTACT-------TCCAAAGCTGAGAAACCCAGCTGAAGGATACAAAATCAGGAGAATGATAAAGGGAAAACTTGTAAATTAGGCACCTATAGACTATATTTCaatctcatttatttatgtacC------ATGTACAACTGAACAAGGCACTTAATCTTCCTAGACTTCACTTTCCTCACATAAAA--AAAGACTAGTACCCTCTATCAGGCTCCTTGTCTTAACA------ACTTTTCTATTcttgaaaaaaagaatgaggactTGGCCTGAACCTACCCTCC--TCCACTCAGTAGCCTTAGAATTGGAC--ATCATGCAATTTCATTCACCCtagttttttttctctataaaatggaaaatgatgcCTACTCAAAAAGATTGCTTTAAGGTTTAAATAACTTGCCGTATGTAAATGTGTCctacatagtacatgatatataGTAGCCACtcag--taaatttttattaaatccaAAGATGTATGAGCACTGTCTTTGGTGCATTA-AAAAagtgacaaatatttttaaaaa--ttgtgattgtGACTTCTCCCACAGTAAAGTTtattatttgccattttatttttgtgttatctATTTTAATATACATGTTAAAGTTATATGCACTTCAGTACATGAATTGCAAACAGTTTTCCTTTTACTTTGATGATCATTGATTCTTTCCTGCCATTACAAGTAATCACTGGAATCTTAATGATAGGAACAG---CCTTCTTACCAAGCACAGTGGTAATACACGACTATGAAAAAAGAGCTAAAGATTACACCAATTCTTCCCCACTGCTTTTC-TCAATAGGTTGTGGCAAGTGAAGAAGATCTTGTTCCCCCGAGTCTGGTGGAACCACCACCCAGAGAAGATGGGTTAGACCACAGGATCGCGGCTCACATTGTGTCCATCCTGCCCTCACTCTGCCTctcagagagggagaaaaaggtcAGGTGGCAAGAAATACCGATA--TTTCATGCCTTGAAA------AAGCACAGATCCTCTCTTTAAACCAacattatttcaattttaatagaaCCTCCGTGAAGTATTCTTAcctgaagaagaaagggaaatcaAAGCAGTGCCCAAAGGCCCTCTCCTACTGAACTACCATGATGCACATGCCTACAGGAAGTATGCACTAAAGGTAATCA----GGTCACCCTAAGGAAAGCTGATGTAAGAACATGTGTTTGTAATTCAC-AATGGAAGGAATCTCAATTAGATAACTCTAACAACAAATTAGATAATACATAACATAGTGTGCAAAATGGATACGATGTAAGAGCTCAGAGAACAGAAAAGGATAGGGGGGAAAGAAATCATGTCATTAAAGAA-AGTCTGCCTAATAATGGAGACCCACT--ACCCC--------------CTTCCATTAAATTTACACTGAAGGTTTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTGTTTTATATGTCTGCTGATACAAAAAACTAGTGGAGATCAGAAAAGGGCCTCCAAAGGGAAAGATGAATATATGTGAGACTTTGGCAGTTTGTCACTGCAAATAAGGATCAGTCAATTCTGTGCACCAGGAACTCTTGGCAAAGTGAGAACTAGGTTTTCTGACCTTCAGCAAAATACCAAGTTTGTCTTCCTCAATTATCACTGATTTCCCCCATCCCcaaataatgaaagtgaaagtATCAAGTTTTGCCTCCTCCATATGCATAAGACACTTGACAGCTTACTTTAATGTGTTCTGTCATGTTGCTCT------------------------------------------------TTTGTGTCAGGACCAAAAGAATTTTGACCCAGTTCAAATTGAGCAGGAGATGCAGTCTAAGTTGCCACTGTGGAAACTCCTTCAGTTCCCTCTGCCCCTCCCTTGGAACAGCACTAAACGTTTAGCTACCATTCATGAGCTTATGCACTTCTGTACAAGTGGTGAGTACATTGCTTTGTCCTAACTGAAACTGATTTTAACTAATGATCACTTGTGCCTCTTTAAGTTACATTCTTATT-ACAAAATGTATTGTGATCACTGAAA--CACTTCAGAAGCTAAAATGGGTACTTTCTTCCTTGAATAATGTCCTTAGCAATG-GGGTACTATGGTTATCATGCTTAACATTCTGCATATTAATACACT-GATTTTCTTTCTACTGTATTTTCTTCTCcagaataatttatttctttcttcctcttctccccatCCTACCTCTCCCCATTGACAATATTAGAGATGATGTGGTAATTCCATCCTATTGAATAATAGTAATG----------------------------------------------CCAAGGTTTTATAG-CCCTTTCCTAGGAAAATGTC------------------ATCCTTGGATCTACA-----------------GCTTCATCACTTC------CCTTTCATCATCACAGCAAACCACACAA---AAACACCACAGCAGCATCAGCTACATAGTAGGAAGGACAAGTGTAATAGTGCAAACTTGCCTCAATTCAGAGATATCTTTCTTTGTATTCTCATGTTCACTGGTTGGAGCAAAccataaaaaaaag-----------ttttagaaatgttttgcTATCCAAAGGAAACGTGAAGTAGTCTCTTTACTCCAGCCTTGATCAACAGATCAGATGTGACATTAAATTcaggttttaaatatttctatactATCAGTCTAACTATGATTGGGGGAAAGTTGAAAACATTATATTCAGCATAAAGATAACCACCAAATCACCCTGTATAGTAAAAC-AGAAATGTATAGTAAAGATATAACCATG-CCtattatgaagaaagaaaaacaagaaatactatTTCAGCCTGATTCCCACCTGTTGA-TGGGAAACTAG--TTTTGCTCCTCGTGAAATTCATAGTGTCAAAGTGTGGATTATCATTTATCTCTTTATCCAATCTTGTGACTATAGTTGGCCATGTATTAGAAGACTGGTGTTCCAATGAGAAACCAGCTGCTTTTTCACTAGTTTAAAAGTTAAGTGGTAGTGGGTATCAGAGAGAACACAGAGAATAA--AGAGACTATTATGAGAGCAAGCCTATGTCTTGTCAATTTGATTTATATAAATG------tcaatttattctatttttctttgtcttctataCCCTT--------TTCCCCAGcatcaaacaaaaataatcccATCTTCTACCTCTTTATAAAGTACTTTTTTCAGAAAAACTACAACTTCTTCCTAGGTCCCTGCTCTTCTTCATGAAGGACAGTTATGTTaaggaattttccttctggctctTGCCTCTAGGTCCCtccatagtttttctttttttagcca-------------------------------ACCTGAATTTGTCAAGAATGTCCACCAAGTTAAAATTAGTGTGAGCACTTC-TTGGCTCA-CCCTGcacaggagcatggaaaggaa--aataaacagtgtGACTCT--GAGGCAGAGGTGCTATTGGAATCTCCTACTCCATCTCATCTTGAG-------------AAGAATATTCATGTCCAGAAATCGAATTTC-------------------------------------------------------------------------------------------TATAAAGCTGAATCATAGAACCAT-AAGATTTTCTAactaaaaggaattttaaaattcatctaaTCTAA----ATCTCCA---AACAAGAAAACTGAAAT-CTCTCAggttaaataattta---aagggtTTGAACAATAGCAGCAGAGCAAACACTAAAATTCTGGTCATTTGAAGGC

a score=23295
s chr3           100026969 842 + 160039680 ATCTCTTATATCTTAACTGTGA--TTTTCTTAGT-TCCCATGCCTTTGATATTTGTTGAAGACTTCTGAAGCCTGTATTTAAAGTCAGGCCAGCACCCGTGATGACATGAACCCTTGGTGCCCCTCAGCCCCTGTGTCAGCCTTGTATTATGCACTAA--CAAGAGCCGTTCCCTGAGGCAGGGGTCATGCTCTTTTACAGAAGTTCTGAGCTGGAATGAAGTAGAACGAGCCTTCAAGGTATTTACTTTTGAGAGCCTGAAGCTCTCAGAGGTGGATGAGGAAGGGAGGCTCAAGCCCACAGAAACGACCAGTGACACAGATGTTGAAAATTTCAACATTCCTTGGGACAATCCTGCCAGGTTCGCTAAGCTGATAAGGCAGCGGTACATTCACAGGATGAGCATGCAGAAGGCCCCGCCAGTAGTAGTAGGTACGCTACATGGAAGGGA---------------------GCGGGTGGGGCAGCCATCCTGGCACTGTGACTAATGGATGCTCTTCATCCCGACTAGAGATTGAAAACACTGAGAGAACACTATTTGTGAACAAGAATTTTGCCAAAGCTGAGCAAGATGCACAAGGAGATGAAAATTCCCCAAATTCTGACGAGCCTGATGCTATTAGTGTGACGGGTTCTACTTCCAACTCCACAAAACCCTGGAATTCTAGTAATAGACAGTTCTCAGAAAAAGAGACCAGTGGGTCCATGTGGCCCCAGCCAGAGTCCATGGGTAAGTGAAAGTGTGCA--TAGGCTCTGCTATGCTGAGACAGAAACAAAGAAACAAG-TTCAAAAGGTATC--ATTTAAATGTAAGAGCTTCTTCAGCTGATGAGAAAGATTCAGTATTTAAGTT
s HiC_scaffold_1 109963456 848 - 233722169 ATCAACTATATCTTCATTGTGTATCTTTCTTACCATTACATACCTTTGATATCTGTTGGAGACTCGTGAAGGCAATGCTTAAAGTCAGGTTAGCACTAGC--TAACA-GACCCATTGGTT-------GCCCCAATGTCAGacttgtaccatgaatcaatacAAGAGTATTTCT---AGACATAGTTCCTGCCTTCTTACAGAACTCATGAGCTGGAATGAAGTAGAACGAGCCTTCAAATTGTTTACTTTTGAGAGCCTGAAGCTCTCTGAAGTAGACAACACTGGGAAACTAAAGCCTTCCAGGATGATGTGTGGAACTGATGCTGAGAAGTTCTATGTACCATGGGACAACCCTGCCAGATTTGCTAAGCAGATAAGGCAGCAAAACCTCCTGAAAATGAACATTCCAGAGg-ccaaacagaa--aacaggtacaTTGCATGGaaggaatgaaaaacatttttatgttttatgatt--GTTAATTTTTCTAGGATTGTGTCCAATGAATATTCTTTGCCCTGGCTAGATACTGAACATAAAGACAGAACTATATATGTGGATCCGAACTGGTCAACATCTTTGCAAGATACTGAAATCAGTAGAGATGTTTCAACTTTTAATCTGCCTGATGCTGATGATATAAGGCGTTATGACTCAATTAGTATGCAACCCTTAGTCTCTGATAATGGAGAGCTCTTAGAGGAGGAAGGCGGTGTGAAGACTCAGCCTCAACCAGAGCCT----TCAAGAAAAGGTGTGTATGTAGACACTGTTATaacatgaataaacaaaaaaaagaagtttcaAGATGCGCTAAATTTAAAT-TCATACTTATTTTAATTG--GAAAACCATGTAGCATCtaattt

a score=126541
s chr3           100031415 4284 + 160039680 [encoded data, 4586 characters]
s HiC_scaffold_1 109965639 4123 - 233722169 [encoded data, 4586 characters]

a score=58885
s chr3           100049072 3463 + 160039680 GTTCTCACGGGCTTTAGTAAGGACTCTCACCCCCCATCCTTTTATCTTTGTCTCATTTAGGAATTACTTAGAACTTGTTGCAAAATCTATTGAAGACTGGGTCACACAGGAAGAAGCGAAGTACCAGGAAGCCAAAATGGCTGAGGAGCTCAACAGGATCAGGATTGAGTTGGAACTGAAA---GCCACTGTCAAAACTTCT---GCTAGCAAAATTCCTGGCCCCAAAAGATCTAAAAGTAAGTAGCCAGTGCATTT-ATTCATAGAGTGATAGGCATTCT-----CCTATTTTAATT--------------------------------------------TCAAACCCAAATAGTCCAAGATTAAAAGGTTGCCCAC-AAATGCCTGTGAGTCTTCACTTTCTCTAACAAATAGAACAGCTGCCTTCGAAATGTGATGACATTGTACCTGAGTCAGACACAGGAATATTTGTC----ACTGC-CCCATCTCCTATGAGCTCTGAGAGATTTAATCTGTTATACAGATTAGATACGAAGAGTTAGGGAA--TGCCAACATCCCTGATGATAGAATCTGTGGGTTCCATCAAATAT-----ATTTACTGGCAGCGTGAGAAGTAAAGACAGAGTTAGTGGGTCTCAA-GAGGATAGTTGTAGATTCCAAAAGCAAGACTAAATCAAG--TCTTCTTCAAGCAGCAAATAAA-------TAAACAAATACCCCCTGGAAGTAGGAATCCAGGAGGAAGTGGGAAATGTTTGCCAGAAGTCTGCGGCATGTACTTGACCAGATCGTGGATAAGTATACATCTTTGATTTTGTTCATCTCTAGGTCTTGACTAGTTTCTAGAACTTTGGGCACATAAGGGAAGAGAAAAGAGGGTAACAAAGAGCAAGGTCATTTTTAAGGAAGGCAA------TAAAGAAATAA-------AATATAGAGTTCATCTAGAAAGTATAGACATTTCACAG---TCCATAGAAAAGCATCTCTTTCTGCTAGCACTAA-TACTTATGATAGCTAAAGGTGAAAGTGACATCTTATAGTGAGATCAAGATATGAAACTTCTCAAAAATCTGCAGCCTCCTTTTGTTACTAGAATAGTTTGTATATGTCCTGGCTCTAAAGCAAAACATAAACCACTCTAATAAGGAATCCTTTGGTATCCAGAGAAACGGTTATATTATCAGTAGTTGAGCTTCCTCCTATGGGAGCCCAAGTCTTCACTAAATGCTTAGAGTAATGAGAGGGACAATGTAAGAAATGAAAGAAAGGTGGT--------------------------------------------------AAGGGAAATGCTAACCACTTTTTAGATACAATGCTACTGAGCAAACCAAAACCTCAATATCTAGGA-----TATAAACC-------GGTTATTTCAGTGGGGGGTGTACCTGGCAGGTACTGAACC------AAGTCTATTCCTGTCAGAAAAGATATCATAATGTTTAAAAGACAGAAAGACAGCAATGGCAAGAGAGGGGTCTCGATATGGGATGGGGCATT-AGGTGAGTTCC-TGTGATTCTGGGGT-----ACTAAGATTAGCTGAAAATTTCAGGGAGATAGA-----TTCAA--------ACAACATGTCAACACAGTGTGAAT-----------------GTGTTGTGAGATGCCATCACCAAAGGCTCAGCACTACTCAGGTATAGCTGTGGAGAT---------------------------------------------------------------GCAAGGGAGTGTTTAGGAATT---------------------------------------------TTAACAAGGAGCTGAACCTGAGCGCCTTTGAGGTTGC-CTCTAGCCCAGAG----GCTTAGTCCTCCTGTGATTGCTAAAAAGTTTGATTTCCTTCACTTATAGCTAACAAAGTATCCAGCAAAACAGAGCTATCAGACCAAGAAAAAGATAAAGAAAAGGAAAAAGACAAGATCCCCTTCGTATTAGAAGGCTCTCTCAAGGTAATCC-----AAGACAAATGTCACAGATCAATCACAAGGCCAAAATTACCTTGTGACTGAGAGTGTGTTCTAGT-------------------CACGGGACATGATCATTTTAGCTAAAACCTCAGAGTTGACTGAAGCCTCAGTGAAAAACCTTGTGTCTTCACAG--------CTTTGCCACATGACAAGTCTTGGGGGAGGGGGGAAATTAATATCTTATTATTTTTGCATAACCACACCCCAGGGCAGTGAGTGATTGACTCATGGTC-GTTTACTCTTTACCTTTGTTGAAAATGCTTGATTTTTTTCACATATTTTTATTTGAACTTCAAGTTATAAAAGTAGTAAGTGCTTCTGTGACCATTCAAGATTCTTTTCCTGCACTATCCCTGCAGTTCCTGGGATAAGAAGTGTCAAAGTTTGATAGGTTCCAAT--TCACACAAACACACACGCACAAATGTACAGAGGTGTTCTG------TTTTTTCATGTTCA---------------TGGGTctgtccttg----------------tgtgtcaccctcct----------agaatgtggattcattcaat---gatgctgaaccttccatactgtgtggtttagaaactttt-atggatttttcattatccaagtacaatcaattattaaatccatctgcagctcctctctcatccttgaaggctgtggagaggggaaggggaaggctgaaggttcccagcttctaacct----gggtttgatctttctggtaagcagcgtctaccccattctgaaaccatctaagggtttgccaagagttgcctcattagaacaaaagacagtcctatcactcatggaattccaggggatttgagagctcagtgccaggacccaggaatgaagaccaaatatctggttcttattatat----cataatattacaGTTTCTATTAAAGtcagttgttacttatctgaaaatggctttattttgcccttattcattaagcatagttttatatttatacaatt-ttagttga--gtttctcatttcctcacacgactctcaagacatcaatctccctcttctctgctaacatcagagatgttaataaattgtcacattttacatgatttgtagacagtttatcttttctctttagctgctttgaaaacattctGTGATCATctggtaagcatttagcagttgctctctagaaaattgaaaggtgcacataggtacacaaaggttt-cagaaaatg-------tatggatggtaaacttagtatgtaatctgtaaatgataacaaatcttatagtactcttca-----------ttgcaaagtccacttagc------------------------------aaataatact--------------tccatatgctttcactgatttt------------------------------------tggtatgttattgtgtccttt----ggttacagttgacaa---acaagtataatcccatcactagtattaataatttgatcaatattttcttttatgttaatgaggcaaaagcaaaattacaaaggggtgtatcccatctatttatcaata--aTGAGCAATTT---GGCTGAGTCAAGAAGGAGACCCTGAATGCTGAAAGGAGAGTTTCTCA-TCTTTACGTACAGTGTAGTGGAGTAGTTACA----TGC---CCTTGAGCTGAATCGTTATTTCTAACAATCTGTCCTttgtttttgttgttgttgttttctttgttgttgttgttgttTTTTAGCACAGTTAATCAGTGGTCAATC------TCCTAGAtgtagcactggctaatgtttgttgtgtaaatattccaacaaaaggtgatttcaagctgccagtgtggca
s HiC_scaffold_1 109989145 3751 - 233722169 GTtcatattgtttttaatattaactC--ACTTATCATC----TGTTCTTTTCCTGTTTAGGAATTATTTGGAACTTGTTGCTAAATCCATTCAAGATTGGATCACAAAAGAGGAAGCTCTGTATCAGGAAGCTAAAATGGCTGAGGAACTCATTAGTGCTAAGGGTGAGACAAAATTGAAAATGGCTAGTGGGAAAAATTATTTGTCCCGCAAAgatatttctctcaaaaaatctaaaagtaaGTAACCAGTTTAGTTAATACCTAGAATACTTAGTTTAGTTAATACCTAGTTTAGTTAATACCTAGAATACCTAGAATAATTATGCTATTTCTTAACCTAATCAAGACTGCATATTTCAAGATTAAAAA---GCCCACAAAATTCCTGTGACACTTCTCTGTCTCTAATAGAT-----GGCTGCATTCCAAACATGATGAAATTGTATCTATGTAGGATAGTGGAATTTGTGTCTTATATTGAGCTTACTACCTCTCAAATCTGGAAACTTTAATCTG-----CAGATCAAATGTTATGTATTAAGGAAATTATAAATGTCTCT--TGGTAGGACTGGTGA-----ATTAAGTATCTAAGATTTATTCACAATGTGTGAAGTTGACTCATAGTTTTGGGGTCTCCATTATACTAATTATGGATTCTGTCGATGAGTTTCCATCAAGACTCTGCTTAGAACAACAAACATAGGGATCCTGAGGCAAT----CCTCATAGCATAAATACAGAGATAAAGGGGATACGT-----GGAAGCCTATGGCAGAGACTAGAAAGGACTTCAGATCAATAcatatc-----ttttgttgttgttaacaTTGTTGTTAATGTTCATGGCTTTAGGCCAATAA-GTAGAAAAAGAGAAGGTGACAAAGAGAATAG--ATTTTTA--GAAGGATACTTGGTTAATTAAATAAGTGGAACAGTAAGCAGTTTGTCTGAAAAATATAGCTCATCAACTGTGTTCAAAAGAAATGGA-----CTCTGTTAATATTCATTGTTTATGAGAGCCAAAGTTGAAAGtgagtttccattttaaa---aaactatataatATCCATAATTTTTGCAGCCTCTGATAATTACCAGAGGACGTTGTACatg-cctaattttaaagtaaaac--aaactaAATTGAAGAGAAATCATTTGTCAAACCACCAAATGGTTGTATAAACCATAGCTCACCTTTC-----TAGAGGCTCA---CAGCACTAAGTACT--GAGAAATGGGTGAGACTGtttaagaaataaagcaaaggCTGTTGTCTCACGCTTAAATCTGTGGCAACCCATTTTTGCCCCACATGCAAGTCAATTGATAAgttggtttccttttctttataatgCCACTGAACAAATCAAAG-CTAAATATATAGAAATCTCTAAAAATCCAGAAATGGTCAGTTTGGTATTGAATGCACCTGGTGGGTGTTGGATTCAGTTGGAGTTTGCTCAAGTCAGAAAAAATG-CAAACCTTCCAA---ACAGAATGGCTA-GATAAAAAGATAAGGGCTTTAATAC--AATGGAAAAGTAAGATGTATACTGTGTGGTCTCAaggtattaaattaaaatcaggtGCAAGTTTTAGGGGAAGAGATGGAGTTCAATAAAAGCTGCAACATTGCATAACACTATGAACAGAATGCACTGCTCCAGAGACTGTGATAACCTCTTCCCAAAATGGTTGCACTTCAGAGGTCCA-TTCTGGAGATGGCGTGAAAGAATTCagagatgaggggctggggatttagctcagcagcataagtgcctgcctggcaagtgtgaggtcatgaattcaatccccaataccaaaacaaaacaaaacaacaaaaaaaaaaaaattcagaggcaaATGAATTTGACAGCCTTCAAGATTCCTCACTAACTCAGAGTTCTTCTATACTTTCCGGGGAGTGCTAAAAAGTTTAATGTTCTCTGATTATAGGTAACAAAGTAGTGAGCAAAACAGAAGTAACCgatcaagaaaaagagaaagagaaagaa------aagatctcttttaTTTTAGAAGGCTCTCTGAAGGTaatccaaagaaaaacaaagcatgcTGATTCAACACAAATCTAAAATTACTTTGTGACAGAAAATAGTGTgaagtaaagcaaaaaaaaaaaaaaaatgggaagtgATCTTCTGTGCTAAACCTTCAGgagtaattaaaa-------agaaaggattgTCCATTTACCAACTGTGTCTTTCACCAAATGATGTTTTTCAGAG---------AATCTGtgact--ttatatttatataatcacaaatcagGGCAGTACGTTGT----TCATAGTTGGTgtattctttacatatttttaaca---ttggtttattttgattattttt------------aattacaaaaataatatatgttttcattataatttaaaa---ttttgctgaGCTGGAGCCTAAATTCCTTAGATAAGAAGTATTAAAGTTCTGGAGTGCTCTGTGCTCATATGAGTGCACA-GCACTAATACATAGAGGAGCTTGGAggggtcttttttttgtttgcgATTTAGATTTGGTTGATTTTGGACTTGTATCTCTGTGGAGTTTTGTGTCACCCTTCTATCACCCTAGAGAGTCTGACCTTTTCCAACCCAGAAGCTA-----TGCAAGCCCACTGATTTAGAGGCTTTTAAAGAAGTGTTTATCACATAGATAT-TTCAGTTACTAACTCAGTCTTCAGCTCCTCTGCCCCACCTGCTAGTT---------AGAGTGGGTTGTGTGTAAGTGGCAAACTTCTGATTTAGCAGGATTTGATCTCTGTGATAGCCAGCTCCCACTCCCCGCTAAATCTA------GGTTTGCT--GAGTTGCTTCATTAGCACAAAAG--------ATCACTTATGAAATGCCAAGGGATTTAAGGGCTCTGTGCCAGGATCTAGGAATGAAAATCATGTATGTGGTTCTTATTGTATCATACATAATATCATAGTTTCCATTAATACCAGATTTTACTTATCTGAAAATGGCTTTATTTTGCTCCTATTCattaaacattgtttt-catttataaaattcttggttgacttttttttatttcctgttagcATCTTTGAGATACCA---TACATTCTCTTTGTTGACTTTGTTTCTGTTAGAAAATTATCagtct-------------------tttatcttttct---------------aaGTCTGCTATG-----CCAGTAAATGTTTAG----TACttcttgaaaaaatgaaatttacagaTATATGAATACACTTTTATTGTAAATGTCACTGATATATATTGTG----TGGTACACAAtttacaaacaata--aaacaatatagtATTCTGTACTTCATAATATTTGTAAATTCAAATTACCGAAAGACAACATGTATAgcacaaaatttataaataatgttaaaatgtttaataCTCATTGCGaacttaatgattttttaaaatttccaatgtCTGAAATATTTTGGATTTAATGCTAAGCTCTTGTATTCTTGACCAATCCACAGTTTACAATTGACAAGTATAACTTTAATGCGAATA--------TTGATTAATATTTTCAATCATATTAACAAGACAAAAGTGAAAGGACAGGATGGCATATCCCATTTGTTTGGCAGTGACATGAGCAGCTTCTGGGCTGAATCAAGTAATAGTTTTTGAATAGTAGATGAATACTTCCACAGGTTTTGTGCTCATTACAGTGTAACAGCTACAACATAGCACACTTTAAATTTAATCTGTACTATTAACATTCTCTCC---------------ATCATTTTCTTTGCT-------------------ATAGATAATCAACAAACAATCAGTGAATTCTGATTTTTACATTTGCTGGTATCTGTAGTATAAATACTCCCACTGTGGCTAATTTCAAATTACCATTGTGGCA

a score=47130
s chr3           100052596 3670 + 160039680 [encoded data, 4317 characters]
s HiC_scaffold_1 109993598 3814 - 233722169 [encoded data, 4317 characters]

a score=64383
s chr3           100058331 2613 + 160039680 AAATGTGCGTTTTTAACACATTTTCTTTTTAAAACCTGTGCTTTAGTCAAATCATTTTCAATTGTGTTTGAAAATATAAGGCATTATAAATGTAGGGATTTAATAAAGTGTTTTTAAATGTGAAGAAACTTGGAATGACTTGGTGATTTTCATTTGAAAAGTAATGTGAATGGTCCAC-AGATCGATAACCAGCATATGGCCAAGCCATTCACTGGTTTATATCCTCTCTGCATTTTGACCTAAAGCCCTTTAAATGAGAATCTCATG-TTCCATCCCTGAAACTCTGCCTCACTTC---------------CCTGTGTCCTTGGTCAAAGCCAAGTCAATTACTTTTAAATCGATGGTATTAGAACAGCTTAGATGCCCGCCCCCAGCATTCCCACTGAATTCTGCTTACACTTCT----GGAGAAAATGGAAATATCCATGATATGATTTTATCTTTTAGAAAGAGCACAGATAGAGAAGGAAGCTGTCAGCAAGTTTGGATCTTTTTCTGCCACCTTGGAAAATGGAATCTGCCTCTCGATAAGTTACTATGGATCAAATGGAATGGCACCAGGT--AAGAAACACACAACAGAATAAATGTCCCATGATGGGCAGTCCTTGCCCTTCCCCAGCTTGTACATTTATCAGAAATAAACCTCTTCTGATTTAATGCTTCACATATAGTTTTTCCTGCAACATAGAGATATGTGGGGTATGGGgtatatgtatgtgtgtctgtgtttatctgtgtctgtgtgtatgtatatgtgtgtaggtatATACATGAAGATAATTTTCCTTTACATCAAGAGCAATGCCTTCACTTTCAAATTTCTTTTATCAATTGTGTAATCTTTTACATAATCACATGTACACA------CATATGTAT--------------ATTTTGATTA------TTAATTAGTCCATGAAAGTAATTCTGTTACATTGGTA-CAAGGAAAGCATGATCTTCCAGAGAGTTCTCATGGGTTTCTACAGAACAATATTTTTATGAGTCCTATGATAGTAGAACTACTCAGTGTACTTCAGGATGTTGGTTTAAAAGGAGCCATTCATTGGACATATTAGAGGATTTCTGGGCTCCACTTTCAAGAAACAAATTCCCCAACTGGAAGCTATTTCCTTTCAAACCACAAAATACTATGTTGC-TTTACCAAGAACCAATTAAGAAATATGTGGATCCCCACAAACTTTAAAGGGATCCAACCACAGTAGACATTTTTTAAACATTGCAAAATCAATAGATAATCCCTATGCCATATAGTTTTAAAACTGTGTGCTAGCAGAGATTATGGTGATCATCTTACCTCCTGACTATGTAGTTC-CTTTGCTGCAG-------ACCACCATGAATTCTCATAACATTGTTTCTTAA---AAGTTGAAATATCTCTAGAACCAC-ACCAAGAGGTGTCTAAAAGCAG----AAATACAGATCTGGAACTGAGAAGGGAAAATCATGCCTACTGTGGCCATTGTAGAGTCAACACATAGATAATATTTGAACCCCTAATTGCGAATAAGATCGT-TACATCTAATATATGCACAGACCAAACTATATATAAC----------------------------------------------------------------------------------------------------------AATCACATACGGTGTTGCATACATGTGCCtatctggacttctgcccctgtaaaacagattcagtaagtcagggagacttgggcatctg--tttaattccctgagtaattattatg-------gtagccaaacttgagaacATAGTGTAACCTGAGACCTGGAAGCATCTTCAAGACTTAAAATGGAGAA--GGGGGGGGGGGGTGACCAGAAA-GGTCAGGAGAGGTCAAAG------AAGAGGTATAATGGATCCTGCAGGAGAACAGATGACAAGATAAAAGGGGCACATGCTTGCACATGCACACGCATGCACGCGCACAGTGTTGCCTGTCATCAGCCCTTTAGAATTTC--CAAACTTTTAAAACCCAAAAGTCAATAGATAGCCTACAAGAAAGC---------------TACTTATCTCACCTTAG-ATAAAACTAGTGTTTGTCTTCACTGGATCTCTTTATCTATA-------TTGC--TTGTGTCTAAGGTATCCTCATGATCCACTCTCTCAGTGCCCGACTT---GCTGTTATGAATC--TAGGACCTTC-----------CAGATGTTTAATGA---GTTCCATTGCTCAAATTAAAAGAAAAAGGGAAAGTTAGTAGAGCGTACAACAGACTGGAGGGAAAGGATATGTGAGACAAGGAACGTGAGATTAATTATTGTATCAACCACACTAAAAGGTTAA-ACACTTTAAATTTTTTAACTACAA----TCTGATTTTCAAAACAACTACATTATCTCTGGAATATATCCAACTGGAAAAACATGTTTCACATAGTGGGAGTTAATGCCAACTTGAACAAATTTTTTGAGATGTATCGATTAACAAGCATATGAAATATGAATATTTAATTTTCCATTCTCCCCTTTTTTCCTATTTCTAGAGGTTATAAATTCTGAGTTGGAAGCAATGATGAATATTCCTTCAGCTATGACAGCAACAGTGGTTCCTGCTGTAGTGACTGTTCCCCAAGGCAAAGGGAAAGCTAAGCCGAAAGGCAAAGAAAAACACAAAGATTCCATTAAAGAAGAGGAACTTCCAAAAGAAGAAGAGAAGAAGGTAGGTGAACATGGCTACAGGTTTCCAATC----TTTTCACCCCAATGTTACTTTTATGA
s HiC_scaffold_1 110012298 2651 - 233722169 aaatatgc---tttaataaattatacttt--aaaattacatttgactgaaataatttt------------agaatgtgaaaaattttaaatgtgggaatttaagaatgtattttattatgtggGGAAATTGTGACTGACCTGgtgattttcatttaaaaagtcataCTGATTATCTGCCAGGCCAATAATCTTCATATGACTGTGCTGTTAGCCAATGTATACCCTGTCTGAATTTCAAACTAAA-CCTTTAAAACAAAAGTCTCCTGCTTGTATCTTCATAATTCTGCCATGCTTCTGACATTCCCAAGTACATGCATGCTGGGTCTAAACCAA-----CTGGTTTTAAATTGATTGTGATGGC-CAGCTAAGA------CCCTAAGC---CCCAGTAAGTTTtggttatatttcttttaaataaaaattaaaatgtccttgatttgattttgtcttttagaaGTATCTTGTGCAGAGAGTAAAGCTGTCAGCAAGTTTGGATCTTTTTCTGCCACCTTAGAAAATGGAATCTGCCTCTCAATAAGTTATTATGGATCAAGTGGAACAGTGCcaggtgaaataaatgaaaaaaaagacatgtgTGCCATGGCGAG-AATCACTGCCCAACCTCAGTCTACACA-CTGTC---GATAAACTAGTTCTG-TTTAATGCCT--CTTACAATTTTT--TACAAggcaaagcaatg-aaaatgtggTACATACACATAGGTGTACATA---ATATGTTTATATGTGTACATAT-CACTCGTATTTGCAAATGAGAATATAGTT------------------------TTGGCTTTTAAATGGCATTTGTCATTTATGTAATCTTTCATATAATTGCATATGTATATAGGATCATATGTATAAACGCACATATAAATTCCACTTAACTTTCTTAACTAGCCCATGAAAATAATTCTG-TAGGTTAGTGCCAAAGAAAGCATGATTTACCAAGAAATCCTTTTGATTTTCtacagaataatatttttatgaattctgTGATTGTGGAAGTGCTCGGTGTGCTACAGGACATTAGTCTTAAAGGAGCTATTCATTGGACATCTTGAAGGATTTCTCTCCTCtactttcaataaataaattttccaacTGGAAGCTATTTCCTTTCAAACcacaaaataatatttcacttttacCAAGAGGCAATTAGGAAATCTGTGAGTTCCTCTGCATTTTAAAGGGATCTAACCacagtacatttttttaaagcattacaAAATCAAAAGGTAATCCCTATACTATACAACCTTGAAACTGAATGTTAGTATAGATCATGGTGATCCAGTTATCTCCCTATTCTGTAGCTCTTTTTTCTGCAGGAACAGTGTTACCAAGCATTATTATAAC-CAGTTTCTTAGTATAGTTTCAAGTGCCTCTAGCACCACAAACAGGAGATGCTAAAAAGCAGATACAAATGTGGATTTGG-ATTGAG-ATGGAAAGTCAGGTAAATTCTGGAACCAGTAG------CAGATAAATGGCAGTTAGAGCCCCAAAAGTGAGCAAGATGATCTGGATTTAATAT---TACAAGTAAAG--ATGCTCAGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAACCGGGTACCATTGTG-------GTGGATTCCTGAGCCTCATCTTCTGTGAGTCTGATTCAGTACATGATGTGGGCCTGAGCAGTTGTTTTTAATTCCATGAA-AATTATTATGCACTAATAGAGTCAA-------AACTTGGTATGCTAAGGGACC---------------GAGTAAAAAGGAAGAATCAGTAAAGGGCACTGAGGACAAACTGACAAGAGTAGTAAAAGATCCAAAAGAGGTGTCCTGGAACCCAGAGG-GAATAGAAttcaaaatgaaagag--------------atgctctGGGACTTAC---CACA-TAACACCTCTCCTCAGCTC-TCAGAATCTCAACAATCCTTTACAACCTGTAAGAAaacacattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacctcaACCTAGAACTAAGCTGTTTCTTTCCTAGCTTTCCTTCTTTGTAGCatttcttgcatttttatttaatatgtccTTGTATTCTGCTATTTGAGTGTAGATCTTTAGACTATTTTGACTCAATAGgactttcactttttttcatatataataaatgaaaggttatttttctaccatt----------gaGAAATTTA--------TAGTGTAGATGGAAAGCCAAGAACATGTGACATAATGACAG-------AATTG----ATCAAGCatactaaaatattaataatctttaaaattttt--ctacaatCTTTCTGATTGTCAAATCAATTGCATTACCTCTG-----------------AAAATGTATTTAGAAAGGTAAAAACTGTTGACAAGTTGTATAAA--CTTTGAGATATA------------AATGT----TATGAATATTTGATTTAcctgt------ttttctctggtttaTAGATGAGAAGGATCCTGATCTGGAGGCAGTGTTGAACATCCCTTCAGTATTGACTCCAATTGTGATCCCTGCTGTAGTGAATGTTCCTCAAggcaaaacaaaagggaaagtaaaaggcaaagaaaaacccAAGGAATCCCTTAAAGAAGAAGAGCAcccaaaagaagaagagaaaaaggtagATGAACCTTGCCACAGAGTCCCAAACTCCATTTCTCCCTCagcattgactttttaa

a score=15423
s chr3           100061229 844 + 160039680 tgccttaatctcttttaactactatcacaaaatatcttaaagtacatgaatcacaaacaacaaaagtcaattggtcaaattgagactggtaagtccaagagtgggttctgggtaactctatgtctcatgtgagcaagttg---ctgtagacagcaccttctgtgttcctttatatcacagaaagagtaaactctgttcactaggtacctttttataaaggcctgaatcacagtcatgaaaaccaagccctcagaattc--tcagttccctaacggcctac---ttgataccatcatgttgggtatcaagttccaccatctgagtctggg----gtggggaaaccaacacctga--------accatagTGTTGTCCACAT-CCCATACATCCAAATAGGGGCACCATTCACATTCCACTCC---AGTCCATTTGCTCAACAGATGCATTCACAGTGACCTCTGTTAACTTTGGTGTCTTCTTCTCTCAGGGAAAATGTGATGT----TTGATACT-----------------------------GTGTCTTGTCACATG---------------TCAAAATTCTGGAATCCTTTTAGAATCCATTGCAGAGTCTACCTACTTACTCACAAGTTATATTGTT-TGACAAATCCT-------TGCTTGATCGAAATAAATG--TGTCGCCTTCAGAGAATGACAAGCATTTACTTATATACAGAATCACATACAGGAAGAAGTAGAACCAGAGATCGTTATACAGGAATCACCACCCTATGTACCCACCTTCCAAAACTTAAATGTATCTTGCCCCAGTGGGCTCCTGCTGACCTTCATTGGGCAAGAATCTACAGGTGAGTGTTAACTGGAGTGGACAAGGAATCATGGGTCAAAAACTAACACAGAAAACC------CCACCATTGAAAGTG
s HiC_scaffold_1 110016946 872 - 233722169 TGTCTTAGTCTGTTTAGACTGGTAtcacaaaacacctgacactgaGTGATTTGTAACCAATAGAGATTTGTCACTCAAGTT-----TGGAAGG--CAAGA-----TGCTGGCAGCCTCAGTGTC-AGTGAGGGCTTGTTGTTTCTATAAATGGCCCCTTCTATGTGTCCTCA-------------------------------GTTTTCTTTTATGGGGACATTAATCCCAGTCATGAAGAA-GAGTCAACATGATCTAACCATTTCCCAAA--GCCTGTCTTTTCATATTATCGCTTTGGGCATTagttttcagcctatgaatttggGCACAGCAGAGGCAACAGCACAAGAGCATTCAGACCACGGCACTGTTCTTACACCTACACATCCACGTGGAAGTGTGATTCCAGGCCTACCTCGAAACTGCAATC-CTCCATGAATCCCTTCCTGATTATTTCTAATAGTGTAGCAGCTGCCTTTTCTGAAGGACAATGTGCCATCCATTTGATTCTACCATTTAACTGCCTCATCTTTTTCCTATGTGCCTCTCTACAAGCAGAATACAAACTTTTCAAAGGCCAAGACTCCTT----AGCCTTCCACAAGGTCTACTGAGCTGTTCACAAGTTATAAAGATATCATAAGCACTCACCAATTGTTTAGATAAAATAATTGattgtt-tatttagaaaataataagtATTCAC----ATGCAACATTATTTACAGGAAGAAGTAGAACCAGAACCTCTTTTACAAGAG---ACTCCTTATGTTCCAACCTTCCAGAACCTAAATGTGTCTTGTCCCAATGGGCTTCTGTTGACCTTCATTGGGCAAGAGTCCACAGGTGAGTGTGAGCTGGTAAGAGAAAGGAGCTCAGGGCAAAAAGCTGCGTAAGAAAACTGTTAGATTGCCATTAAAAGTG

a score=29726
s chr3           100062716 1539 + 160039680 CCATAGTACTT--TGCTATTTAGAAGGTATTTATTGAGTGCTTTTGCTCTTGATTGCCAGTGAGCAGCAGAATACTGAGAGATGTCTGGCTATGGTGAAAGATGGGGG-TTTGGGTTAA--TTTTGAAGGATGATGGGTAAGTTAGAGAAGGTTTGAATGTGAGGCTCCCTGAAGTTCAAAGAAAGCAGGGGATACCAG---AGCAATGTCTACCATGGAGCAAGAGCTTACTCAGAATGGCATGCCAAGAGAGAA--AATGGAGTCCCTAAGACACTGAAATTCTGCTCCCAAATCATTTGG--------CCTTGACATGCTCTGGACTTTAGTGTATGCAAATGCTCTAAGAAGG-ATTTT---------ACTATTTGTTATGT-TGTGAAAATGTCCTTACTCACTACGTTTGAATGAA--AAAGGTCATCAAAGACGCAGTGTGCTGAGCCATCTGTCATGAATGAAAGGAAACTTCCCTAGTTCTCaaacacagacaaaagaataaaaacaaaacaaaacaaacaaataaaaaagaagataaaaATCCCAGCCCTGTAGCACCATTCACCCCACCAATAGCTTTCCTCTCTTTTGATTTTTAAGATTATTCCATCGTAGATGAAGAACCCACCCGGAACCTCATGATCCGCCAGAGCTACCCCCAGCGGTTGAAGCACTATGAGTTCTATAAAGCAGTGATGCCACCCCTGGAGCAGGAGGCATCAAGAGTTGTCACCAGCCAGGGCACCGTTATCAAGTATATGCTGGATGGATCCACACAGGTTAAAGACTATAGTAT-TTAAATAGCCTCCCTCACAGTGAAGTGCAAGACAGCTGGACTTTAAGTAAGGAGCAAGGCTACTGCACGGAGGAGACATACACAAAGCACAAGGGTGCATTAAAGTGGCAAGTGAAAAGGAGTGCAGTTGGAGGCACTGCAGTGAAGTTAGGCTGTCCCTGAAAGCCAGAGTGCATACAATAGAGATGGTGTTCCTT-------CTATATG--ATCTATAAGACTGCAGACTCCATATGCTTTCCTCTTTTTCC-CTCAACTCATCTTAAAGCAGGAGGATGGAAAGCTCTTAAATACTCAATTCCCaacagtgctaggagacaacgaaatacatcattagt--gtaagaagtgtttaaaaaattgctagaagatgcaaggtggttagggtcagactgatagagatataaggacaaagTTTAAAATATGTACAATTGAAAAAAACTCTAAAATTAA----GGAGGATTTTGAATAGAAAGGTGTACGTCTAAGAGCTGAAAATCAGGGTAGTTCTGCAGGTAAACTCATTTTGTAGAGACTTAAAAATCAGAAGCTATGAAACCCAGAAACTGCATGCCTTTGCCCACCTTCAAAAATGATCAGAGAGAAAGGCTTCTATAATTAGACAATATACTACCAAGAGCCATGAGGGTTT--CAAGACTATGTA---TCTAAGAAAATCAAC----------------AACAGATTCAATATTGTTAAAAATCACCTAACAGTAAATACTTGAACA--TACATTTTAAATGGGTAAAACTGATATAGACAGAGACTCAAGTTAACAAT
s HiC_scaffold_1 110019782 1433 - 233722169 CCacagtatttccttcttttta-aagaagcttACTGGATGCTTTTACCATTGATTGCCAGCTAACAGCTGAACATTGAGAGAAATCTGGGTCTGACTAGGAATGAGGGAGTTAtgttaacttttttaaaagtgatGGATGGTTTGGAATGGGTT--------------CTTG---------GCCACTAGGTGATGCCAGGCTAGCACAGTATATTTTGTGGCAAGAAGTTACTCAGAA----ATGAGAGGAAAGCAGCaatagag----------ggggaaa---------aaaaacatgtGGGATGGTTGCCCTGAGCTGTTCCGGGCTTCC-----------TGCCAGAGAAAGGCATTTTCATGGTACAAGTAGCTGCCATGCGCCTGCAGATGACCTTACT----ACACCTGAGTGTGTGACATGTCAACAGAGAACCAGTTCTCTGAGCCATCTGTCAAG---GCATGAAAACTCCCTTGTGATCCAGATGCaaaccaaagaatgaaaacaagc------------------aagaaaatacAT-TCCCAGCCCACTAG----ATTCA----AAGAATaactttattccttttcattttttaagatctGCATTTCGTGGATGAAGAACCCATCTGGGACATCATGATCCGTCAGAGCTACCCACAAAGGATGAAGCACTATGAGTTCTATAAAACAGTGATGCCACCCATGGAACAGGAAGCTTCCAGAGTTATCACCAGTCAAGGCACTGTTGTCAAGTATATGTTGGATGGATCCACACAAGTAAAAGGATATACCATACTATCTACTCTCCCTTGCTGAAAAGTAAAAGACAGATAGCTTATGAGACAGAAACATTACTAtggta--gaaaagagaaacaaatagtaT---GACATCTTAGAGTAACAAATGAAGA-----TTAGTCAGAA----------GAAAAAATGCTACCTATACAAACAGG-----ATACAAATAAATCATCATTTCTTGACATGATTATTTGGTATTTGTAACATGG-----------TGTTTATCTCCCATCCCTCCCAGAGTACCTGGAag--------tgacatatttttaaataatgaatttgTAACAGCactgaaaaacagcaaaatatgtCATCAATAGGTCAGAA-TATTTGAATAATTCCTAGAAATTACAA----TTTAAGGTCAAaccaatggagaaacaagaataATACTGAAGGCATGGCTGa--aagaaaaaccttaaaaataaaaatggaggttCCT--ACAGATATAT-TACCTCTGGGCTCAGAAACTCA--GTAATTCC---------------------AGAGTTAGAAACCAGAAATCA-AAAGCACAGAAGCCATAAACCTTACCCACAATTCCTCAGTGGTCACAAGGCAGCACTATTATAAACAGATACTACACCaccaagaaatgaaaagggttcCCAAGGAGAAATAAAGTCAAGGGAGGGCAGCCTCATGAAAATAGGAAAACAGTTTTGAAGTCacctaaaat----taaaagtaaatactcaaacaagaaaattaaaaatgagtaaaagtaaTAGAGACTGGAG---AAGTTAAAAat

a score=46058
s chr3           100064648 3196 + 160039680 TAAAATAAGTAT--AAACTGCTGTGAAAAAAAATCAAAAGTTCTTCAAATTTTAAAGTAATTGTGAAAAGCCAAGTGGTAGGAGGGGTGACGTA-GAGAGAAAAGAGCTAAGAGGTGTGGAAATGCTCCATATGCCCTAGCATTTCTGGAAGAAAACAATG--AGAATGGGAGGAG----AATGTAGT--TTAGACAAT------------------AGTGTGTGAAACATATTTCAGATT---CATCCTGGCCAAGTGCCAATCTGGGATGATGCTAATTTATCTTTAAGTG--------------TCATCTTGCTACCT-AGGACT---GCACAGGTAGCCTGCAAAGCTTCTGAAGAGCCCAGGAAGAATCAGGTCAGAGTCACAGGGACAGCTGACTTCCTTACCATACTCCCTGGGAGGCTGTGCACATGGGTACCCATGGAGTATCTATGATACCTAGAGATGGCATGCGTCCTTGGTAGATGGTAATGGAAATGAGACATTTAAAA---------------------TATA-----ATACATTTGAAA-----------ATGTGGCTGTTGTAGAA-------------------------------------------------------------------------TTCTTATC---------------------------------------------TATACGATTTTCCAATTATATAGAATAAGGATAAAGAATAGAAAAGTATATTAAT---CCAACAATGGTTGTGAAATAGAAGCAAGACAGATATAGGTAGAAAATATGAATTCATAGTTATTGCTGTATGC--AGGTGCAAAT-CAACCCTCTAATGGCACTTTCTG--GCACCCACATGAAGGTCTGCCTTCAGCCGTCCTGC---AGATTATTTTGAGCCCCAAAC-ATGCAGGGTACAGCACTCTTTGAGGACCAGCCTCCTCTTGACTTCTGAGAATTCTGAGA--CCTTGTTTTTCCTTCAGATTCTCTTTGCAGATGGTGCTGTGAGCAGCAGCCCTGATTCGGGTCCTGTTTACACATCTCCTGAATTGCCTACAAGCCCCCATAATGGAGATTTGGTGGACAGTGCCTCTCAGCCCAAATCAGAAACAGGAC---CTGAGATCATCATTACTAAGAAAGGTAACCATCTAAGTATCTTACTCTGCA-----------GGATTTACAGTTTTC-AAATGCTTCACAGCTGTTCCCTGTTATGATGCTGTGCATCGTTTTATTATATACATACCTATTCATGTACAAATACACACTCATATGTATATGCTAATTTTCTTTACCAACACGGGATTGCTTACTAGCTCATGAACTGCCTTCTTCCACTTTGTGGAATAAATAACACACATTTTCCCATGCATAATGAACAGTTTCCTATGTCATTGTACCCACTTACACATTAGCTATACTATCTGGGGTTGTGTTTTAGGGGTTTGTTAACTAAGTAATA--AAAGATTCGAGTCAGCATCCCTGGGAAGCTGTTGACCTTCTCTTCAAGTTGAGACAGG-------ACCCCTCGGATGCACCCAGGGGCTTCCATTTATCAGCTTCCAAACCAGAAAAGAAAAAGAAGTGCATTCAAGAG-----------TGTGTGTTCTCA-----GGAGATTCCTGACCCCAAC------CCTAACCTTCCTCCCTTTGGATCTCAAGGGCTACACCTGCATGGGTTTCAGTGCTGCCAAAACAAAGAGCCGATATTTTGTGCCTTTTTTCAT-----------CTGATTTGTGGAGTGTAAGGGGTGTTCA------GGAGCAGACAGTGGCATCTGCAATAATTGAAAGCAAAGATTGCTGCTCTGAAGATTTCTGTTTATACTCCTCCCACTAGCACAATATACGAAAGGAT---ACTTTCACACACTCA-TGACAATACCAAATATTATTCTCTAAGTGTCAATCAGTTTGGTTAGTGAA--------------------CCTTGTTACTATTTGACTAATAGTGAGATTAATAAGTTGAGTGGTAATTGAGTTTAGTTCA---TAGTAGCTTTCACAGGAATA----ATTATATTTTAGTTTTAATACTATCT---------CTTCCACTGTAATTCTGAAATTTTTTGAATTGTTTTAATCTCCTTCTACATTCTACATTCTACATTCATTTTCAAGTCTCTATAATGTTCCTAGTTTATTTTAATCACTGATTCTTAACTG-----------TTGAAATACAATTTTTAATCTTATGCAT-------------------GATCAATA-----ATTCA--AACCT----ATGcttgaaaacagcacacatcccgtagttattcggtacagtgttctctttatacttattatatgaaacttgttagttgtgttTCCCAGATGTG---CCTgaggtcagcatccttttctgtaaagggcaagatggtaaatcttatagccttgg---------caggccatgtgttctctgtccctgtaactcagcaattctgc---tggagcaggagagtgctttttggtaattcataattcaataagcctcaaatatgctgtgtcccaataaaaactatttatgaacattaaaattggaatttgatactgttttcatgcatcataaacta-----cttttaaattcctattagctgcttagaaatacgaggtgtcgttacttcacagacaacacagaacaggctgcaagccTTCCTTATAGATAGAACGCCCAGTCCTTACCTCCCATCCTTGCAT---GCTTCTTGTCC--CCGACCTGATTTATTCAGCCACATGT---AAGTTGACCAACAGGT-GAGCAGTGCTGCTCAGCACTGTGCTCCTTGTACTCCTCCTTGCTTCTTGTGTAAGATAAatttgtttctttaatggttctgtcaaattttccttcagatagtttgatagtata--att----gtaaatacagctttagagttat----tctttgtggtgagtttaccttgtcattgttttacagggttttttttttttttttaattgtgagacttctctcccctaatgtttctttgCTTAGATTGCTGTGTCTCTCCTAACCACGGTTCTAAGTAACCTCGCGGGTATGACTTTTCCACTCTCATAGTCCTCTgtagcatgtgcctaaatgtgtctcttatatacagcgtataggtagatgtcgtcaaagctaagtttgaaaggtcttgtttatagagattttaattcattcaTCGAACAGTTGACATTTCctgaaaatctccttatattgtgcttattctcaaatggcaatttcactgagtgtgaaattctaaattgaTGCACACTGACAGTGTTTTAGATATACT---------CATGTTTTAA---------AGATAGCTGTTAGTCCAATTCCTGCTACTTTAAATATCAT-----TCATCCTCAGATCAT-TCCCCATTTTTTTAAAATAGTTTCAATACAATT---ACACTTG-----GTTTACTTATACAAATAGTAGTGCATTAGgcacttta-atctgtagataagtgtatctcactgatgctgaaaatgtctcaataattatctcttca
s HiC_scaffold_1 110021218 3396 - 233722169 tgaaataattttttaaatcgctatgaaaaaaa-tcaagagttcCTAGAAGTTAAAAATAACTCTAAAGGATCAAGTACCAGGAAGGGTGGATTATGAGGGAGA--------GAAATGTGGGAAAGGGATTTACGTACTAGAATatccagaagaagaaaatagtataaagggagaaataataaagtaataatcAAATAATCATAACATAAAACTGCCTGgcacttaaaaaataattcaaattagaCAAAGCAACAAAGTACCCATCAGAATTGGCAATAGTTGGTCTTTAAAAGATTCTATAAATaagtcatttttcaattttagggCTCTAGAGTAGAAAATTCCCAAAACTTC------GTCTACAAAAGATTA----AGAACCAGATTGGCCCTGGGCTTCTTTGTCATGTTCATTGAAAGGCTGCACATACTGAT---------GTAT-TACAGTACCTAGAGTTATGATACATAGTAGATACATATTAATAGaaactaaacatttaaaaatcgaTTCAGTTTTAGCTAGGTATGGCGGCATacatctacaatcccagcatgcaggaggctgcagcaggaggatgaCCCTGAGCTTGAAGCCAtcttgggctgcatagtgagttcaaggtcagcctggactgcatagcaagacctcatttcaaaaacaaaaaattaaatgcagTCATTTGAATAATTGAAAAAGagtaaatagtttttcaagtacATAGGATAAAGGtgaagaatagaataaaatctcaGTTAcccaacaaagac---aaaaaacaagaaacacaaa-gtaaATAGAAAGTATAAAACCATAACC--TGCTGGTTGTTAAGCTGCCACCACTGTGCTCCAGTAATACATTCTGTGGGAGGAGTCTTGAGGCCTACCATCAGTCTTTCTTCTCTGAATTATTTTGAACCTATTTCTGTTTATCACACAATGCTTACAGCTAGCCGACCCTTCCCTTGCTTCTGAGCATGCTGAAgacctttgttttcttctcagaTTCTCTTTGCAGATGGAACTGTGATCAGTAGTCCTGATTCAGGCCCAGTCTG------TCCTGAAGTGTCAACAAGCCATCATAATGGAGATATGGCAGATTCAGCTTCTCAGCCAAAATCAGAAACAGTGCCATCCGAGACTGCCATCGCAAAGAAAGGTAACCATGCAAGCCTCTCAGTGCATACCAGATTGAATAGATTTTGAGCTTACTGAATGTTCCACA-----TCATTATCATAATACTGTTCACC--TTTACTATG-ACA---------ATATACAAATATCC----------ATATGTGAATTTTTGTTGCAATCACAGAATTAC-TATCCTTTCATGGACTGATCTTTTTCTCTTAGT--AATAA---------------------ATAATGAACATTCTCTTATGTTGCTTTATGTTCCT--ACATTCACTGTACTG-CTGGGAAGCTGGTTTAGAGTTGGTTGAGATCAACAATGTTAAGGTTCTGAGGAAGCATCA--AGGTTGCTCCTGACTTTTACCTCAAATTGCAAGAGGTGCATTAGCTCCAGGGAT-------GAGGTCGTTATATAGAAACTtctgaaatagaaagg--aaagaaactgagtCAAGAGCTTTCTTCACTTGTTTATCTTTACCAAGAAAGATTATAGTTTCCATTTTTACACCCAGCAACTCTCCCTTTGTATCTCATTGACTGGACCTGGCTAGGAACATAGGCTGGGAAAACAAGTATCTGAGATATTTTGGCCCCTTTCTTGAAAAAGAGCACTATtatcagggaaaaaagaaaataccagtaGAGGAAGCAACCAACAGTGTTTGCCATAATCTAAAT--GACACTGCTACcctgaaaa---------atatttctgatatatGCACTACAGTATGAAGTATCTAACTCTCAAACCCTTGCCAATGGTAgctactgtcattctcttaatcTCATTGAATTTGATAAATAAATCTAATGCATCATAATGCTGCTTTGCAGTTATTTGATTAATGGTGAGATTAGTGAA--AGGTGTTTATTGGGTTTTCTTCAACTGTGtaactttt-cagaaatatttgatagtattttcttttaaattatatatattagcTAATTTCCactacattt--------------attctttt--tctctttaattatctaaatttctttgtgcttttccAAACCCCTGAAGTACTTATAGT---TTTTAATAACTGATTTTTAGTTATTTAAAGGTTTTTGACACATAGTTTCTAGGCatacagatatagatacatagacacatagatagatagacagattcaggaatttttgaaagtttaaaagtaGCATGAATCCTAGAGTTATTTGGTATGATGTTCTCTTTATATTTATCAGGCAGAACTTATTACTTGTGTTGTCCAGATCTGTTTCTCAAGTTTAGCAAACATTTCTGTAAAGGGCAAGATAGTAAATACTTTAGATTTTGTGGGTCATATGGGTCATATGGTCTCTGTCACAATTA--TAATAACTCTACCATTAGAGCATAAAGGTAC-CTTGGACAATACATAATTAGATAAGCTTTGCCTCTGTTGTGTTTCTAT-AAGACTATTTATGAActctaaaatttgaatttcatatgatTTTCCTATGTtgtaaaatattattcttttaatttgcttCGAACTCGTTAGGGTTCAAAAAAATTGCTACTTT-CAAACTTTTCAAAAAAGCCCACAGACTT---TTATCTGTCCACAGGCCAA-----------CATTATTCTATATAGTTTCTAAATCTACTATGTTGATCTGTTTtgcaaaatgtttacattttctgaaaagatagaaTAATA-TACTCAAAGCTGTGCTtcttataatttaa---gaattatttgtgaaataaatgtcttttcttaATCTTTTAGTCATACTTT-CTTCATA---TTTGGGAGGATATTATTTCAGATATATACAACATTAAAATTACTATATCTTCcgagtaaatttaaattttcatcatttttcactGTATCTTTTTCTT-----ATTATAG-------CTCTACTggatattatttaa-taaattatagtgT-------------AATTCTTACTATCCTTATG----------TTTCACT---------TTCTGTGGTTTGTGTTTCAATGTGTCCCTTGTGAGCAGAATGCAGATGAATAttccaaaaatgaaatttgaa---ttttttctctagaAATTTTAGTCCATTTGTTGTATAATTGATATTTTCtaaaagtatttt---------ctcatttatgaaaGGTAATTCCTCTCAATGTAGAATCCTAAATTGAT--------ACTATTTTTCCCAAATATTACAATCCTCCATACTCTGATATTGCGTTAAACAGCTGTCGGTCTACATACTATTACTTTAAACATAATctagcttattttaaaataatctctgcATTTTATTACAA---CTTCAATATGATTTGACCACTTGTGGATATCTATTTAT-CAAGTCAGAATGCACTAGATTTCTTACATAATTGAATTAGTATATTTTACTGGTTTTAGGAATTTCTCAGTAATTATTTCTTTA

a score=30235
s chr3           100069759 3830 + 160039680 [encoded data, 4530 characters]
s HiC_scaffold_1 110033056 3953 - 233722169 [encoded data, 4530 characters]

a score=22870
s chr3           100076562 762 + 160039680 AAAAATGTTAGAGACCTCAATACAATGT-----TGAAAAATACAGGTATAAATGATAG--ATACAGTAATTATATAATTTGATGGATTAGTATATAATTTATGTAAATATAAAGTACATAAACCTCATAGGTTGTTTATTAACACATAGTTATATAG-----TTATAAAAATGAATTGCACAAAAGAAATAAACCTAGGCATAGACAAAATGCCTATTTTACTCTACCTGGAGACTTTCCTCATACACATATT-------TGGAAACAACATGAACAAATAGGAAGAAGTCTCTCAACTGTCACTGGTGAAA--------TATTTAA-----------TGATTTTCAATTTTTATCTTGAAAAAC-----ATTTTTCACTTCTCAAAATGAAAAGAATGCTGACAGCATACTTAATAAGACAGGATGCTAAGTCACATCAGAATGTAGATTCTAGAACTGTTCTGAAGGATATTGACAAGGATTGCAGGCCACACTTGAACCCTGTGCAATTC---TTTGTAGCCAGGTCTT-----------TCTCCAGAAGGAATCCAGCTGGCCAGGAGATTGTTTGGGGCTGATTGCCCACTGTACGAATCCTGTGCAGTCTCCTTACCTTGTGTTTTACTTGTAGCTGAAGGTCCAAGGACTGTCACTAGACAGGTGAAGTGTATGCGGATAGAAAGCTCACACTATGCCACTATTATCACCAACTGCGAGGACAGTAGCTGCTGTGCCACCTTTGGGGATGGAACATCTATTATTGCAAAGCCACAGGGGTCATACCAGGTGGGTCTGGTTGGTAAACCGGGA
s HiC_scaffold_1 110040828 770 - 233722169 AAGATTGCTAGAGacctaaaacaaatttaaaagtaaaaaaatcagaTGCAGATGATAGTAATTATATAATCATATGATTACAtagaataatatataatttattaaaat-tagagCATGCTAGTGTTATATATTGTTC-TCAATATGTATCTTCATAAAAAAAGTATAATAATGAGTTACATAatggaaataaatataaacataaagagAA----------ACTATAACT----------TTCATGTGTATATTataaatgttgaaaaaatatGG-CAAAGAATAACAAGTGTAT--ATTTTGACTGCTAAAAAGTATGAGTAATTAAATTacaatttttgcattttaattttcaaaatgaaaaactaaatattttcaacttcacaaaataaaaagaacagtgaGATCA-AGACAATAAAA-AGTATGATGATTTATTctaaaa-----------gaattattttgaa-----tTGACAAGGAGAATAAGCCTCACTTTGACTTGGTGGAGTTCGAACCCCTAGTCTACTCTCCATGTGTGTTCTTCCCGTGGGGAATCCTGACAACCAGGAGACAGC----AGCAAATTAGCAGC-ATCAGCATCCTGTGGTATCTGTTTACCTTGTATTT-GCTTGTAGCTGAAGTTCCTCGGACCATCACCAGACAGGTGAAGTGCATGCGGATAGAAAGCTCACACTATGCCACCATTATCACCAACTGTGAGGACAGTAGCTGTTGTGCCACCTTTGGGGATGGGACATCCATCATTGCAAAGCCGCAAGGAACATATCAGGTAGGTCTAGTTGGAAAGCAAGGA

a score=7666
s chr3           100078437 161 + 160039680 CAGACCTAATTCACTTCATATAGCT---GTAAAAACCCC-ATAT-GTAGTCACAGCTGGAGTCTGGGTCCATGGAATATACACTCTAGTGTGGGATTTCATAAGATGGTCAGGGAATTCCTGATAAGGAGACTTGGTGAAAATAGTCTCTTTTCAGAGGTCAGGTG
s HiC_scaffold_1  71897969 166 - 233722169 cagatttaattcattttatttttcttgtataaaaACCTTTATGTTGTAGCTACTGCTGGAGCTTGAGTCCTCCAGACAGAGACTCTGGTGTAAGTTTCCTCAAGATGCTCAGGGAATTCCTGGCAGGAAGACTTGGTGAACACAGTCTCTTTCCAGGGGTCAGGTG

a score=8778
s chr3           100078442 205 + 160039680 CTAATTCACTTCATATAGCT---GTAAAAACCCCATAT-GTAGTCACAGCTGGAGTCTGGGTCCATGGAATATACACTCTAGTGTGGGATTTCATAAGATGGTCAGG----GAATTCCTGATAAGGAGACTTGGTGAAAATAGTCTCTTTTCAGAGGTCAGGTGTCAGGTAGCTGTGTCTCTTGAAGATGACATCAAAGGTAGTATTGGCTAA
s HiC_scaffold_1  31945802 212 - 233722169 cttattcactttatttttctcatgtagaAGCCCTGTGTTGTAGCTACAGCTAGAGCCTGAGGCCTCTGGACAGAGACTCCGGTGTGGACTTTTACAAGATGGTCTGTCTGCAAATTCCTACTG-GGAGACTTGGTGAACACAGTCTCTTTCCAGAGGTCAGGGGTTTGGCAGCTGGATGTCTTGGAGATGATATCAATGGTGGCCTTCGTGAA

a score=6377
s chr3           100078461 186 + 160039680 TGTAAAAACCCCATAT-GTAGTCACAGCTGGAGTCTGGGTCCATGGAATATACACTCTAGTGTGGGATTTCATAAGATGGTCAGGGAATTCCTGATAAGGAGACTTGGTGAAAATAGTCTCTTTTCAGAGGTCAGGTGTCAGGTAGCTGTGTCTCTTGAAGATGACATCAAAGGTAGTATTGGCTAA
s HiC_scaffold_1   8999555 170 - 233722169 TATAAAAACCCTGTGTTGCAGCTACTGCTGGAGCAGGG---------------ACTCTAGCATGGGTCTTTATAAGATG-TGAGTGAATTTCTG-TAGGGATACTTGGTAAACAAGGTCTCTTTCCAGAGGCTGGGAGTCAGGTAGCTGTAGAGCTGGGAAATGACACGATTGGTATCCCTGGCAAA

a score=18415
s chr3           100079424  841 + 160039680 acagagataatgggttagtggtcaccaga--ttagaatcatgggtgatacagtgatgactaatgaggctggagtttctttgtggaggcaataattaaatattctaaaatcatgtataatggctacacaagctcttggatatattaaacaattatcaaatactacacttctaagaggtgaatttacaatacatgaattggaactcaaataatgagcta----GAAGTCATTACATAAACACTATCACTTGTCTATATAGGCTATCA---GAAGGGTAAAGGCTAACCAAAGCTTCTAAGAA--------------CATTTATCCCTTTTAATATGTTTCTTTGACCCAAAACGTAATGGGTACCAAATATTTTGCATGGAGTTTCAGATACTTACCTCATTTAAAATGGAGTAAGT--CTTAAATAAGAAGAAAAGAACAAGCACAGAGAACATATGAAAATGGGAAGAAAAAGCATGAGGCCACA-----------------------------------------------------------------------------------------------------------------------------------------------------------CCCAAGAAACTGT-----ATCTTCTGTGTGTC-CTTTGGCAAGCAGTCCTTCAGAAACATCATGTTCTTTCT--------------------------------------------------------------------------------------------------TAGATAAT--------------------GTTTCTGTCCTGAAAATA------------------------------------TCTCTCAAATCCCTCAAATTGCATAAGAAAATTTAATGTATTTTTTCTCTCTC---CTCCCAGGTGCTACCTCCAAACACAGGCTGCCTTTATATTGATAAAGACTGCTCAGCTACATACTGCCATGAATCAAGCAATAATTTGTACCATCCCTTCCAGAAGCGTGAGCAGCTGAGAGCCAGCAGGTATATCATGAAGCACACCTCAGAGGTGATCTGTGAGGTCCAGGATCCTGAGGGGAACACCTTTCAGGTAAGATGCAGGGTCCCTATGA--AGAGAGCCTGGACATCtg
s HiC_scaffold_1 110050726 1164 - 233722169 ATAGAGATTGAGGGTTAATCACTGCTGGAGCTTAGAAACAAGCATAATACACACA-GACTAATAAAACAAGTGCTTCCTTGAGGGATCA-TAA--AAATATTCTGGAGTTAGG----ATAGTTGCATAAGTTTCC--ATGTCCTATAAATGTactaaata-tatacttttaaaggGTGAATTTACAGTATATGAATTGTATTTCGAA-AAGCATCTATTACAAAATCATTACAAAATAGCTGTTACTTAATGACAGCATCCATCACGAGAGAAGTGGGGAATAATAAAAGCTTCTAAAAAATATTTGCTGATAGCTTTTGGCCCTTTTAGAAACATTTCTTATCCAAAAACACAGTGGATATccaacattttaaat----------atgtttatctcttctaaaatatattgaatatctTGAGTAAGGGCATGGGAAAATTAAAGGAGATACTGTATTAATGTAAATAGTAAATGTGAGGACACAGAGGAAgccatccttttttatttatctatttattttatttattttattttattttttttttttttgtctttttccttttttatcggtaccggggatcaaactcacgactgcctgcttgcaaggcaggtgcttatgccactgagctaaacctccagccctggaAGCCATCCTTAATTTTCAGTTTACCTCTTTATCAAGCAGTCTTTCCCAGATTTTATGTTCTCTCTCTGGATTTAAGTAATCACAAAAACAATATCCCTTTCTTAATTCCCAAGTGAATTTTCATAGTGCTCAACAGTAGAAAAGTATAAATCTTGAAGTATATTAGACAATTAGAACAGAATTCCTGAAATGTTTTCTTCCTGGAAATACAGTTTATGATATGGATATTATTTTTCCTCAACTGATATTCCAAATCTCTCAAACTAAAtaaggaatttaaattttttgtctttctttttctcttccaggtGCTACCTCCAAACACTGGTTGTCTCCATATTGATAGGGATTGTTCAGCCACATATTGCCACGAATCCAGTGGTAACATCTATCATCCTTTCCAAAAGCACGAGAAGCTGAGAGCCAGCAGGTATATCATGAGGCACACATCAGAGGTCATCTGTGAGGTCCTGGATCCTGAGGGAAACACCTTTCAGGTGAAGTATATCTTCAGTATGGACAGacagcctgaggctctg

a score=33446
s chr3           100080840 2455 + 160039680 ACCTCAGCCAACCAATCATGAATGTCAACATCTTTTCTTTAATTCTTAAGTATATTTTCATAGAGAAGAGCAATCTTAATAACTTTGGCAGGAGGAAACTTAAAA-ATACTAGACAATT-ATAGAATATGTAAGTTTTTTTAAA-----AAAAATAATGCAACCACAAACAATAATGTAGGAAT----------TTAATTGAGAAGAAAT---GCACGCATCCT----CCAATGT---CATGGCGTTAGGGCAGCTATAGTGAGAAGTGCCTAGCAGGGATGATG-TTGGGAAGAAAGGGTCTGGAGAGAGCTTAGGCGCTGCTATGATGATGCTCTCTCTTCTATTTAT--CTTTCCT---------GTCCAGGAATTGGAGAACCATGGCCTCATACTTTATATAGATTAGGATCTACAATGTTTACCTCACATTAAAAAAGGTTTaaaaatctaaagactatctcatgacatatgaaggtacacacggttcagag--------ttcagtggtgctgtggaaactattgctggaacacagggatgc-cctttgtttgct-gcttgtctctgcttgcctttgcacagcagtgcatgatgggctgtgtgtttgcaaaagaagagtgtgtggcctgcatctcctacattgcttacttctggcacttgaccaaaaagcattggcacccccCTGGTCTAAGCATTTATC-----CTTTTCCCCCAATCCTCACCCAACAGTGGAATTTCCTCCAATGACTAGCGGGTATGGGGTTA-------GTTTTTAGATTTGACCTCAAACCACAGAGTCCCTAATGT-TAGTTTGGTATGCAGACCAGTCCTGGTCCAGCTCATGTTTTTCTTCCCTAAATAATTGAGACT--TCTCAGCATGGGCATGAATTGATGAATTTCAATTGATAATGA-CTAGCAATG-----------------------GAAACAT----------ATAGCCAAG-------------------GCTCCTCC---------ATATTAAAATGT-----------------------------------------------CTGGGGTATTCCT----------------------------------TACCAAG---------------------------------CATGTTTCT-----------------------------------------------------------------AATACCCC--------------TCTAAGGG----------------------CCATATCACCTACAGTGGG----------CAGCTAGTGT-----------------------------------------GTCTCTACTTTTACTAATGGAATCC-------ATACATAATATCAATACCTTGTAATTAGA-TATGCTTGATTTTTCTGCTAATTCAAAAGAGCATGAGCTTATTCACATTCGATCAGTGGTGATGTAGG----ACACTGGCATTTTTTTTCTCTTCAGTTGCTCATATGCC-TATCCCTTAGGTCATGGCTGATGGCTCTGTATCAACAACATTACCTAAAAAGAAACTAGAAGATGACTTCAATGTACAGATGGAGGGCTACGAAAGCTTATCGTCACTTCACCTTGAAAAGAATCACATGCAGATCTATGGTGAACATGTTCCCAGGTAAAATGGCACCAACACTGTTAGGATTTTTATCCTCTGTTCCAAGTTCAAGAAGCACCTTTACTCAATGTCTCAAATACTCAA---ATGTTTACTTCTTCAAATAGATTTTTTGTTGTCTATACTGATGGATCGGGAGTGGAACTTCTCCGAGACAGTGACATAGAAGAATACTTATCCTTGGCGTATGGAGAGTCAACGACTGTGGTTCTCCAGGAACCAGTACAGGAATACCCAGGTAGAGAAGCCATGCTGCTGGCAGCTCCCCAGCTCCTCTGATGACACTCATCCTCTGGCTGTTCAG----------TCCCCTTTG------CTCATTCTGCTACTCCAAATTCCAGCTGATCATGTCACCTTCCTAACATAGCTCCCAAAACTGATGTTCATCTCAGACTGTGTCTAAGTGTCAACTTTTGCAAGCCCAGAATGAATGCCTCTTGCTGTTGTTAGAAGGCTTGTGCCTAGGGTTTATCTAAGAGTTCATTCCATCCTGTTGAGAAACATTGTGAGCTCTCTTG--CAAATTCTT------TGGGGGGGAATTTTTAAGGTGATATCTCGGTCAAACTGAATACAATAA-GAAAATATATTTTATGT-------ATAAATTGGAATGCTAagccgggcatggtggcgcatgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgaggccagcctggtctacaaagtgagttcaaggacagccagagctat----acagagaaaccctgtctcaaaa---aacaaaaAACAACAAA---AAAACCCCAAACAAATAAAT-----TGGAATGCTA--GTCAGAAATATGTGTTGTATAA--TATATTCACTGAGAAATTGTGTTATTTT-ATTAATTTCAAAAAATATTGCAT-------GAAATtaaaggcacg-tactttgatatgctgcatatatgtgtgtacatatacatacatatatatatatatatatatatatatatatatatatacacacacatatatgtatctatgtttctgGGCTTCTTTTAATTTTTTGTTTGATGGTTTATACCTCGAGTCTACTGGTAAGCATGCTAGCAAGTCTATGC-----TATCATTTAGTTTATCAGCATGCATGTATGTACATATTATATGAGTTG-TTTGTGTGAATGTGGAAAATAGAAAGCTGTGCCTGGCTGTGCAGTGTATGTAAGGGAA
s HiC_scaffold_1 110051974 2689 - 233722169 ACTTTGGGCAAGAAATCATGAAAG-CAGTAACTTTTCTT-GATTTCCAACTGCATTTCCCTAGAGCATGGCAAGCCCAACGG-TAGAACAGTAGAAATGTTAGAGCataatagataatttaaaaaggaaagaaatattatcAGATATCAGAAAACAATGCTACCACAAAGAATGATATAAGGATGATCTGCATCCTTGTTGAAATGAAATCAAGTACAAAGCAGAAGGCAAATGTGTGCAATGAGCCAAAGAGCCCATACTGACAAATATCTTGTAAGACCGAGGATTAGGGGCAGAAGGTCTGAAGGGATGCTCAACTCTTCCATGGTACAGCTCCATCTTCTGCTCCTGACTTTCCTTTACCTATAGTCCAGG----------CCTTGGCCACTTGCTCCATAAACCTCAAAAActa-----ttttttgtacattttaatttcattaaaagtcTCAAAA-GATTTTGTGACacacaaaaat--------ttcagaaaattcattCTCAGTCTTGTCAAGTAAAGTAT-GCTAGAAAACCATGATATATTTTTGCTTACTTAGTTGTCTCTG-GCACTTCTGCTTAGTA----AGGAAGTGCTGAGTATTTGCAATA-CAGAACATGTGGCCTGCAAATCCTGGAGTATTTACTTCTGGATCCTAACCAAAGAGGTTTGCCAACCCT-TGCTCTAAGaatttgttggggtttttttcctcattccccACCCAAAAGTGGAATTTCCTTCATTGTCTGGTAAGTAtgaagttatttttttgttttttggtttgttt----gtcaCAAAGTCCTTAACTTCTTTTTTGGTATGCAGACAAGTCTAG-----------------CTTTCCTGAGTAACTGAGACTCTTCACAGCATGAGTTCACGCTGACAGATTTCAGTTTATGAAGAATTAGAAACGTGAAGCTCATCACCCCCCACATTGAAATGTTGGGGATGTTATAGCCAACCACCTTTCTAGACACTGACGCTCCTCCTGGGGATCACTGTCAGCCTGTATCTCACTTTCTGGAACTATGCTCCCAGAGCTAGAGAGCAGTAACAGCTGGACTATTTCTCGTGTTAAGGTTAAATTTGTTTCCCTGCATATTCTACCTAGAGGCCCTAACTCTGCTTTTGAAATCTCAGAGTGCAAGTTTCTTCCCTGTGATGCCTTTTAACTGTCTGAAGACAACTATCACAGGAATGCCCATTCTCTCATGTTTAAATATCCCATTCTTTGAATTTGTCTGATAGAATAAGGTTTTGAGTCCCCGCTCCATTCTAGTTACTTTGTGTCAAATGTTCCAGATAGTTTTCAAATTCTAGGTATGGTTTATAAGTAGAACTGTGAGctagattttcatttttattagtgtaatTTTAATTAAGTGAATGGTATCCTTTATTTGCAAATAAAACCTGTCTGATTTT-CTG--AATATGAAAACATACCTGTTTTCTCACTCTAGACTGacagaaatgaaagcattatgataattttactttttcttttaatgaattttatgcCCTGTCACTTAGGTCATGGCTGATGGCAGTGCATCAACTGTGTTAgctgaaaaaaaatctgaagatgaTTTAAATGTAAACCTTGAGAGCTATGACAGCTTATCATCTATTCGCCTTGAAAAGGATCATATGCAAATTTATGGTGAACATGTTCCCAggtaaaataatactaataatattaTAACTGATGCTTTCAATTCCAAGTTCAAGAAGCATTTTAACTGAGTAGTTCAAatgattattgtatttttattttgtca----gatTTTTTGTTATCTATGCCGATGGATCAGGAATGGAACTTCTCCGGGACCGTGACATTGAAGAACACTTATCCTTGGCCTATGGGGAATCAACTACCGTGGTTCTCCAGGAGCCAGTGCAGGAGCAGCCAGGTAG---AGCTTTGTCCCT------TCACCAGCT------------CTCACCTTTTTACTGTCCAGTTCAttgtcttctcttttgttttccctcACT-TACTATTCCACTTTCCAGTTGGCCGTGCCAATCTACTTTTACAGCTAC-----TTTATGTTCATATAGTGCTCTTTCTGAACACCAAACTGTgtaaactgagaaaaaattaatCTTCCTATTATAAGCAGATCTGCATGTAA-----ACCTAAATTTCCTCCCCATCTCAGGGA-------TCCAGGCTCTTTTATTCATACTCTTACATGCTGAGGTGGTTTATTTTAGAGTATATTT-------ATGATATAgaataattttaatcttttttgagttaccttcattatttttacttct--------tttttcctcctatGCCTT---TCTTTGCTCTT-------------------ACATCTGAGTTT-ATTTCATCCTGAT---AAGAATGAG----AGAGCTCTTAGAGGTTTTGTCATTTAAAGATGTTTCCTTGAAATTTAATAcaagataatatattttatatatgaaatgtataatttcatatataatgTCAATATAAGATATATAGGTCATATAAGTTATATTCAttagaaatttatattattttcatcaaTTTCAATGAAATTGGGATGTGACCAGAAATTAGAGAAATGTTACTTTGAT-TCCTGCACCtaggtctgt--------------------------------------------------------------------------------ttctttttatcttttgttcaATGTGATATGTGTCAGATCCATCTATGAGTATGCCTATAGCCCCATGCACTTTTATCTTTTAGTGTATCCACGTACATGTACAC--------TAAAGCTTGCTCTTTGTGACTATGAAGAGCAGAAGGCT----CTGTGTATGTAATGCATGCATGTAAA

a score=29151
s chr3           100084794 1990 + 160039680 AGCATGAATGAGAGACACAGTTCAAGCCAAGACAAGGGTAAACAAGGAGGAATCTGCTCTGCTTCTTTGAGCAATAAGAAGTCAAAGAAG--CTTTAATCATGGATGAAC-------------CTGGCTGTCAGGATCAGTTCTCCCCATAGTGCTACATCTACATCTAGAAACGCTAGCTGTTGCTTCAGTCCAG-GATGGAACACCTCTGAGGCACATGATTAAATAAA-----TGAGGAGGAGGCAGAAGTAGATAGATTCAAGGCAGTTAGTTGGTAGACCCAACACTCCCTAAATATGACTGCTGACCCA------------AGCGTGAAAGCTTTTGGATGTTTAAAGTCTAGTTTTCAGATGCTG-ACTGACTCATGGTC-CATCTTAGAGAGGAGCACCCTAAAGCATAGTCATTGTACCCGAGCACGTTTTTT-------------ATGTAAAAGGATTTTTTGAACTTGGGTAATATGTGTTGAATTTATCAGGAACATTTTGATAGAGAAATAATTTTTGTTATCTCCCTTTAATCCAGGTGCACTGAGCATCACAGTCCTTCGCCCTTTCCATGAAGCATCACAATGGATCATGAAGAAGGAATTAGACACCATAGTTCCTCCAAATCTCCAGTCAAGGTCATGGGAAAGGTTTCCTTCAGTTGAGGTATCCATTTC---CCACAAAGTCTCTTTATTTAAATAATATTTC-------------AGGCTTGGGTCTTCTATAACTTTATATCT---TTTCAGCCTACTGTAAGTTAATGAATGCAGTCAAGACATGTTATATTTGGATATTTAAACATTTGTATATGTAGCAATATACTTTTAGAAGATCATGCCTGGCTAGCTAATTTCAGTTTTGATTTTTATTCTGCATGGCAAGTCTGAACATGTTCCTATATTATTAAAACATCCCTCTTGAA-AATTC-TGTAAC----TACTTACCATGTTCTTCCTGATACTAAAGCACTT-TCCTTGTCATTTCTCCCTGGTCAAGTTAGAAACAAAATGTTGTGTCTTTCATTCTCCCTGTTTTTTTCTTTGTGTATTTAAAAGGGCACAAACTGAGTGAGTGAGCCagagagagggagagaga--------gagagagagagGACAATGAATTTTGCTACTG-------------------CACTATTAGCAAGTAAATACTG-TAGATATGATCCTGA--AGCATCACTAAATGCTGC-TTCTTGTAAGA-CTGCCATTTTGTTCCATAACTATCACATGAAGCATGTCCAGCACATCATATGGTGTTCAATTATGAAATCCATGAAGATGCCAA-AAATGTAACCATAGATCA-------CATCACTAAAGGAGGAGGGTAATGTCATTGAAT-------------------------------------------------------------------------------------------------------------------------TTCTGCTTTCAGTAGCCTACAGTAAATTCTGCTATAGCAAGAGCAGAGACAGTGAGCAGTTAATAGAACAAAA-------ACTTCTTCCTTTTAATTTGGTGACTATAGTCAAATTGATTATCAGAA-GTGGCCATGATTTCTTGTCCTGAATCT-----------------------TGAAACACTGCACTATAA---TAGTCTTCTCTGAATGTTGAAATATCA----AGAAG--------------------CTGAAGATACTACAAGGTGATAAGATAAACATACCA-ATTTAGGATTAATGAAA----ATTACTTTCTTC------ATCTGAAATTCTGATGCTACAAACTGAAAGCCACTGGGAGGATGTCACTGGACACTCTTTTTAAAACAAAGCAC-------------------CAAGGCAGCAAAGTACACTAGTCCTAAAGGTCAGCGACTAGGATAACAGGTTTGAGCTCACTTTTAGGCGGACATTTCTTCCCAAGAGGTGAATTTCAGTGACAATGAGCTCAAAATTGGCTGAGACCCATGGAATGATTTTACTCTCAGAGTCTTCCTATAT----AAATTCACACAGAACCAGGGAGTTAAAGACTGCTAACTCAAATGTCTGTGGTAATCTGAGCA-TGCTAAACAAAGCATTATTCATGTAACATGATC-------AAACTGTTGCTGAATTACCAAGTGC----------AGAATCACAC--AGTGCTCCTGAGA-----ACCATAGGGCACTATCTGATAGCA---------TTAGTGACACCTATAAAGAGGAAACTTTGCTCAGGTCCAG
s HiC_scaffold_1 110055032 2249 - 233722169 AGCACAGGCAGGGAAAATGGTGCAAGTTGAGGCA-GAGCAAGAAAATTATACTCTGGTTTGTCT-TTTGagcaacaggaaatcaaagaagagtTTGAATCATGGATGGACATAACCAATAGTCCTGGCTGCAGGAGACAGTTCATTCACAAG-----CACATACAAGTAGAAAAGTTAACTATTGCTCTAGGCCATTAATAGTATCTTTCATAGGCA-GTGATGTAATATAAAGTCTATGGTGAAAGCAGAAGTAGCTGAAGTCAAGAAAGTTTACTGATAGAACTGACAGGACTTGGATGTGATTACTGAGTAACAGTGACAGTGAATCTTGATCATTTTAAGGTGATCAAAATCCAATTTCTAGGTGTTACGGTAACTCAAAGCCTCATCTT---------CTTTTCAGATTGTAAACTCTGGGTCTCACTAATCTTTTTTACATGGAAGACAGTTCAAAAGTGTTTGATAAATTTAGTAAATGCATGCTGAATTTATCAGAATAATTTTAGTGGAGAAA--ATTCTT----------TTTGAACCAGGGGCCCTGAGCATCACAATCCTTCGTCCTTTCTATGAAGCATCACCGTGGCTAATGAAGAAAGAATTAGAGACAATTGTTCCCCCTAATCTCCAGTCAAGGTCATGGGAGACATTTCCTTCAATTGAGGTATGCAATTCCTGCTACAAAATTCTGCCATTTGCATAGCTATCCACTATTGAATCAGAGTCTCCAGTCCTCT---CCCTTATACTTATATTTTAACATTCTGTAAATTATTG-ATAGGCTCAAGGA--GTTAGa----ggctttttaacatttttatgtatgGCAATGGAATTTTACAGAAATACACCTGGCTatctaatttctattttatttctttgtctatatTGCAAGTGTGAATATCTTCCTGTAATATTCAAATATACTTTCTGAATAATGCATGTTACATGTCTCCTATCATGAAATTACTGATATTATGccatttattcctttaatttgttACTTAACAGTTTTAACATAGCATTTTAGGTC--TCATTTTACCT-TTTCTCCCTTTCCATA-ATAAAAATGCACAAACTGCATATAAGAATAATGTAAAGGATTACATATGGGTCTTGAAACTGAAATGGTAATAAATATTGTGATTATGTCAGATGAGACAAATCTCACCTGAAGTgtttaaagaatgaaagaaaatattttgggcAGTAATCATAAGTCTTGCAGTCCTGCAAGATTTACCATTTTGTTTAATAAGCAATTTATGTA-TGTCTCTAACATATTATAAGATATCTAATTATTAAATCAATGAAGACATTGATAAGTATGAGCAGAAAGTGAGGAGATTGTTAATATTAAGTGATGGGAATatctttaaattatgttttttgggggctgggcatttagctcagtggcataagtgcctgccttgcaagcaggcagtcgtgagttcaatccctggtaccgataaaaaggaaaaagacaaaaaaaaaagtataagttaTGTTTTTTCTACCCTACAATAAATCTTATAATAGTGAAAGCAAAGATGATAAG----TAAAATAACAAAGATGTTCCAcctctttgttttaatttggtaACTGTAATCCACATTGTGACATGAAGgtcattttaaattcatgttcTGATTCTATATAACTTATTAATGTGGGATGTGGGGCAAATCATAATGaaccttttcttttctgaagaTGAAAAGGTCACAATAGAAGACTCACTAAGGCTCACAACTTTGAAAGTACTATGCAATGATAAA--AATTACACTGTATCCGAGATTAATGAAATAAGTttatcctcttcctctttctctgaaaCTCTT-TATGATGAGCTTCACGCCTCTAAGTGGTTATCTCTGGTCATGCCTTTTCAAAGGAAGTGCAAAAGGTATACTTCAGACACAGGTCAACAAAGCCCACTATTCTTGAAAACCAGTAACAAGAATG------------------------------TTTTATCCATGA----ACTTTca---------aaatacaaactattt---atcagTAGGATGGTTTCTCTCTCAAAAACTCCTTTTACcacaaaataaacacagaaccacaacattaaagacatgAATTCTGAATGTCTTTGGGCCACATAACATTGATAAAGAA-----TAGTCACGTAAAGTTGTCATTAACTAGTCTGGTGTTGCATTACCATGCACCACTTTGCTTAGCATTACCTTAACTGCTACTCGGAAGGACACTATGcaacaatgtttaaaaatattcagtttcTTGGAAATATACACAAAGGGGAAATTTTTGCCAGTTCCAG

a score=18679
s chr3           100088180 454 + 160039680 GACCCCTGATCTAGTATCCACATAAGTACTCA--TTAAAAAA--------AAAATCATTGCTGCACTGCTCTGACTTCTTTGGTGAATCTTTCACTTTGTTTGATTGACAGAAAAAGACTCCAGGACCACCATTTGGCACTCAAATTTGGAAAGGCCTCTCTATTGGGTCTAAGCAGCTGACAAACATCCCAGCCCCTATACTCGAAGGACCCAAAGTGCTACAGATGCGTCAGTTCATTCAGCATGAAGTCATAAAGAATGAGGTGAAACTAAAGCTACAGATTTCCCTTAAGGTAACAGAATCTGGGTGACATGATGCCTATACCCCAAAAGAATCGGGAACATAGCAA--------------ATCAT---------------------TTCCTGAAGAGCCTGAAACCATCTAGTTTTTACCGATATTTAGAT----TAACACTTGAATGTTAGTCACCTAAAATAGAAGGTTAAAACGTAGAAGCTACCTAATGATTCC
s HiC_scaffold_1 110057354 479 - 233722169 GATTCTTGGTATAGTAGCTACAGAAATACTCAACTTAAAAAATCTGTGGTAAAAACATT-----------CTGATTTCTTTGGTGAATGCCTGGCTTTGTTT---TGACAGAAAAAAACTCCAGGGCCTCCGTTTGGCACTCAGCTTTGGAAGGGCCTTGTCATTGGATGTAAACAGCTATTGAGGGCCCCAGCTCCTGTACTCAAAGACCCCAAGGTTCTGCAGATGCGCCAGTTTATCCAGCATGAGGTCataaagaatgaagagaaactgaggctgcagGTTTCCCTTAAGGTAATAGAATCCAAATAATCTGATG--------CCAAAAGAATCAGAAACAAGGCAGTCGTTCTTCTtggtttcatttttggtttttctttcttatgttccTGTGGAACCTAAAATTATCTAA-TTCCATCAATATTTATCTACTATAACACATGAATGTCAATC-TTAGGACTAGAAAGCtgagaggtaaaaaaaaaaaaatgattcc

a score=57261
s chr3           100092841 4125 + 160039680 [encoded data, 4807 characters]
s HiC_scaffold_1 110059313 4540 - 233722169 [encoded data, 4807 characters]

a score=15006
s chr3           100098921 1611 + 160039680 TGGGTGGTTAATCACAAACCAGGGAAGGTGAGGCTCATAATCTAACTGTGTGGCATAAAAATAAAAATGGTGGGAACAGGCAATGTGGGCAGAGGATAAAGAAACCAGCATGGCCAGGACATGGAAGACGCACAGCAGATATGAGATCATTTGAAAACTCAACACTGACACTGGAACAAAG-GCGTGTAGACCTCTCGATTGCCAGGTTCATTGATTCC-------------------------ATGTGAGCAGCCTCCAGACTGCCACAC-TTGAAGGGGAAGACCAGTGAGGCAGGAGAGAGAAGGTATTGTAATGGCAAATTAGACTTGTTTAAGTAAGATGGCGTATTGATTGTACCTTCACAGTCCTTCCAGGCATGCTGTCT-GTGCACATTCACTGATCTCAGAGTCAGCAAACGTGTCTAGGGACA-GCGAAAGTATGGTTTCTTGCGAAGTC-TACTATACTGCCTGGTTGTTTCCCTTCAG--AGATTCTGTTC---------GCCTATCTATAAAA-----------------TGTGAAGCACG-TCAGCCTT---GGTGGCTGACAGTTGCTTAGAAGATGCAGTTGTCAAGATCATGAGCTTAAAGATGTATAACCTAGCTTGTCATTCATCCCGACTCTGAACTAATTAT--GCTGTAGAGTACATATCTAG-----------TCTTTAGGTTTTTACTATAAAATGGAGATAACAAGGCTCACCTGA--ACCCCAGTTTAGATCTCACTAGCCTTCCCTGTGTATTGCCTCCCCAGTAAAGGCATTTTGATTTGGAAGAGCCAACTCAAAGAAAGCAGTGTGGGTTGCCCCTTAACTTTCTAACAGCCTCT--------TAGGCTTAGCTCTTTGTATTGTGTGGTGGCTGCTGCTGCTACTGAAATTATGGA--------------AGCTGTCACTTACAGCCTGGACAACCTCACAGCCTCAAAAAC---ACCCATACACTGGAAGGGCACCATGGCTT-TAGACATTTGAGATCAACTGGCATTGTTAGTCCCTATCTCATACAAGAATCTGATTTACAAAAGAAGAAATGTGATTGCGGAAGTAGGAAGTGAGCACCCTATCCCCAAGTGGAggcattagatggagcaccccttcaatcccagtactagaaggcagaagcaagtgggtctctgtgtgctcaaggctaagttggtctataacacaattccaggccagccaaggctaaatagtgagactctatcccaagaGGGAGAAATGTCCATCCAATTTTTTTTCTCCTCAGTTTTCTCATCAGTGGTTGTAATGGTTTCCAGTGGGATTTGGAGGGAAAGCACAAGCAAAATAAC-TTTTCCAATGTGTTTTGTGTGTCTTCTCTTGCATATCATTGTGGAATTGTGAATCAGGAACAATATCAAGAAAACACAAAGCTACCTAATGCAAATTAAGACAAAAGAAGTAACACCTTATTTTAAGTCCGAATTGAGCTCGTTATTTAAGTCAAAGGTAATTAGATGTAATTGATAATCATT-TACTCTTGATAAAATGGTGCATTGCATGTTAA-----AATCTTTTCTGATACTCTGCGCCTTTTGCAACAACAT-GACCAAATAACTCTCACACTTCAAAATCTGTGTTTGCACAAGCATACACAAT----------------------AAATTCTCTACCCATATGTGACTGCTGCT-CCCTTCTCTCCCTTG
s HiC_scaffold_1 110063818 1528 - 233722169 TAGGTAATTAATGGCCAGTcagtaaaatcaaaacacataAT-TAAAAGTATATCATAGAAAGTAAAAGGTTAGCAA------ATGT------AAAATAGAGAAa-----gtttcaagaaaatgaaaagggataAACAAAAATCTAATGGTATGGAAGAATGAAAATGTGAATGGAAAAAAGTGAACTTGGGTTTACCCATTTGaagatttattgattcttttgtgGGAAAAATTTAAGAGAGTAGTATAAACAATAGCCAGATTGACATACATTGAAT-------CCAGTGAAGCTGGAGAGATAT----TTTTAGTGGACAATTAAAACTGCTTAAATAAGATGATATGTTGATCACATCTGTCCAGTAGTTCTAGGCTTCCCATTTTATATAAGGGCACTAATCTTAGAGCCAGCA----TTTCTAAAAGTAAGTTACAGTTTGACTATTTGCAAGATTGTATTATGCTGACTGACCATTTCATTTCAGTAAAGTTCACTTCAGGAATTCAGATTATCTGTGAAAGATAAGATTGCCAAATATCTGAAGTTTTCTCAGCTCTCACATTGGATGACTGAAGGTTGACATGTGCAGTTGTCAAGGTCACTGTCTTGGAAGAAAGCAATCTGAGTTTTAATTCAGAATACCTT---ATTAGTTATATGATTTGTAATACACAACTTAACCTCTCTGTATCTTGATTTTTTGACCTGTAAAGGGAGACAGGAAGTCTTATCCAATAATTTCAATATGCATCTCTTTGAACTTTCCTATGTGCTATCTTTCCAGCAGAGG-ACTCTGCTATTCAAGAGGCAAC-CAGCAGGATTATTATGA-TAGCCTAATAACTTTGTAACtacttatattatttatatactattcctttggttttgttttttg-ttatcacTGCTACCAGAATTATAAACCTGAAGACTCTGtagcttttatttgcatttcaga--aTTGAAGAACTTCAAAAACTTGAACCATTTC-----AGGATTATATAGTTTATAATCATTTGAGATCAACTG-CAAAATCAGACTA-ATCTGGTAT-----TATTATTTCCACAGTAGGAAATGTGAGTG------------------ACtcta--------------------------------------------aaaaaaagtcaaaa---------------------------taagtTGACCAAAAATCTG--------------------------------TCTGTCCAATGAG--------------CTAATTTGT------ATCAGTTTTACTATTGGTGATTGCAttgattttctgtag--ttttagagctaaacataag-aaaatagcattttttaaTGTCTT----GTATCTTCTTTTGCAT--TATTATGGAAATATCAACCAGGCAGGAAATTGAGCTGACAAAAAAGCAGCTAAGAGATATTAGGAACAAAGTGATACCACCCTATTTTGCCTCTGAATTGAACCAGTTATATCAGTCCCAGGTAACTGAATGTAACTAACAACAATTACAATCTTTATAAAA-GTTATATATAGTGTTAATATATAATCTCTTTCCTGACCTTGTTTAATTTTCTACTACATCAACCTACTAAC------------AAACCTATATTCCCCTAAACaagtttaatttcatttcttcttccaaTGTAGAAATTCTCTACCGGTATATTATTATCACTGTTCCTCTGTGCCTTG

a score=10250
s chr3           100106674 203 + 160039680 ACGTGCTCTAACTTAATTTTTTTTCTCTAACAGAGCCAGACATTTATATGCCAATCAAAATTCCAACCCAGTCATTGCTGCAGGATGTTACTGGACAAGCAAGAAAAGAGAAAGTGAGGTTACCTTATTACATGATGAGCTCCAAGCCCAAATCTCAGCCTTATGCCAAGGTAACAGAGATGCTTGGGCAAGTCTTCCAGGAC
s HiC_scaffold_1 110072344 202 - 233722169 ATGTGGCATAATTTAAACTTTCT-CTCTAGCAGAACCAGAATCTTACGTGCCTGTGAAAATTCCAGTCCAGTCATTACTGCAAGATGTTGCAGGacaagcaaggaaagaaaaagtgaaattacCACATTATTTGCTGGGCTCCAAGCCAAAGTCTCAACCACTTGCAAAGGTAAAACAGACACGGGGACAAATTTTGCAGAGC

a score=25022
s chr3           100108483 1162 + 160039680 GCTCTTTCATCCTACCC--TGCCCAGA-TCACTCTCCTTTGGCCACTGTGGGTTTCCTCTCCTGTCCATCCTCGGAGCCTTTTAGATAACGTTTTCCC--ACCAGCTCTGATAGAAATACTTGCTTATGCTTACAAGTTtatatatatatatttatatatatatatatatatatatatatatatatatatatatatCCTTTCTTTGCTTCCATGGCACATGCTAGCTGTCACCATTGCCATGTTACAGTTGCCACGTTAC-AGTTGAGTCATCATGTTGCTGATCATATGTAACTGATAATCATGCTTGAaaacttaaatgtgaatatgtattatgtacgggt-ttgttagagatgatgattctgactctctaggtctgatc---tgtgacagagtctgcaggttaat------------------------tgctgggtgatgtcagtgatgGGCAGAGAGCAGAAGTTCACTgtgtggcttccagatcagcagcattggcaacaccagagaatgttt-taaatgcaaaaccct--ccccactctggac--acagagagtctgaaactccaggaacaggaacagtaatctt--------gagtattccagaggactctgCAGGAGCCTACGCAACCCTAGTTAGCCACTGTCCcagaggaaagagcatgaacctaagaatcaggcgaacctggggttaagacttctctacttaAGCATTCAGCAAATGATTTCTTTCAACTCC--GAACTTGCACTTTCTTTTCTTCTAACCAAAACCTAAACTATTTAT-ATAAGGATGTTGTAAGAATTGCATGTACATTT----TTAAGTC--TTCCCTCTGGTGTCAGCAGTATTTTCTT-TAATC-------------AGAAACTCCCCTTCTCCCTTTTGTCAATGTCTCTGCTCTACAAAGGTGGAAGATCCTGTTGGGGGAAGAGTGAATACATCCTCCATCGCATCTGCTGCTATGTATAACCCAAACGCATCCCCTTTCGGGTTCCACCTTCTCCCACCATCTGTGAAGTTTGGAGTGCTTAAAGAAGGACACACCTATGCGACCATTGTGAAACTCAAGAATGTCGGCGTGGACTTCTGCAGGTGAGGCAAAGGCACCAGGTGCCTGCCCATGTTC--------CTTTAATGCTTGTCTTTCCTATATT----AATGACCACTTAGTGAACTGTAATGACATCTTGAATTCTGTATAATCACATCATTTATT
s HiC_scaffold_1 110072856 1128 - 233722169 GTTCCTTCACCCTAACTGTTCCTCAGCCTCACTTTCCTTCAGCTATTGTaagtttctcttcttccctttcccctaAGCCTCTAAGATTAAGTTTCCACCAACTGGTTCCAATAGGAAGGCTTCCTTGGGTTCACTAGTAAA-----------------------------------------GTTTTTATCCTTGTTTTCTCCTTATTTTCATGTCACACAGTAGTCACTGCTATTGTA--GATATTATTGCCATGTTTCTACCTGATACATCATA--------CAAGTGTTTCT--------------CAAACTTCACCATGCTTATGGATTATCCAGGGCTCTTGTTAAAGAC-------CTGACTCAGGAGGTCTTACACGGTGCGGGAGATTCTGCAGTTCCATCAAACTCCCAGCCCATGGCAGCGCTGCTGATTGAAGACTGACAAGGACATAGAGCAG----------TGT---------ACCAGCAGCATCAGCAACACCTAAGAATTTGTGCAAATGCAGACCCTTAGCCCTGCCCctgacggacagacagac--agactc--gGAGTGGGATCAGCAGTTTGTGTCTGAAGAGTGTGCTGGAGGTTTTGAGGGTAGCTGAC------TTTGACAGTCACCA--ATAGAGGAAGAAGTACAGACTTTAGTATGAAGCAAACCTATGTTTCAAGCTTTGTCACTTATGT-TTGAACAAA--GTATCTTTCAGTTCTTTGACTTTGAGCTTATCCATCCTTGAGGCAAAGCCTAAAATATCTCTTACAAGAATATAATAAGAGTTTCATGTGACTCTAAATCTAAGTTATTTTCCTCTTGTGACAGGAACACTTTCTTATTATCTTGGGAACCCCAAGGagaatcattttatttcattaacctttttttctga-cttcatAGGTGCAGGATCCTGTTGCAGGAAAAGTGAACACATCCTCCATTGCATCTGCTGCCATTAATAATACAAAGTCATCCCATCTTGGGTTCCACCTTCTCCCACCATCAGTGAAGTTTGGGGTGCTTAAGGAAGGGCACACCTATGCAACCACTGTGAAGCTCAAGAACATCGGTGTGGACTTCAGCAGGTGAGGCCAA-GCACCAAG-GCCTGCTCAGGTTCCCATCTGTCTCTGTTACTTGTCTTCGCCAGCCTGTGCAGGGAGTGTTTTCTGAGTCGTAACTGTGCGTTGAGTCT-------TCACATAATTCATT

a score=57158
s chr3           100117601 2111 + 160039680 ATTACAGTACTAGAGTGTTCC-AATCCAAGTATGCATTTCCcttttccagtaagttttatagtttcatacatattcatgatagtaatttccatccttttgtttctccttgaagaacctcattaagcattt--cttgtaagacaagttcagtggtaatggatttccttggcttttgctggtttataaaat---------cagttatttctgaaggatagccttgctgggaatagtggttttggctggcagatatttcacttccg----cagtttgaatatagtccctctttgctttttggcccacaagttttttcctagtagaacagacgataatttca-----actccctcggttgtggcctgatgtttgtgtcttcctttcttttaaacttccttgtctttgattttgaAATCATACTATTTCTAATCACACTATTTCTGCCTGATTAAGACAAAAAG-AATAACTGAAGTAC-TATGATAATTTTAGCTATGATGACCTAACT----ATTAATA--AACATCTTAGCCCACAGTTCAGTTTACGTATAGGTCTGAAAACATAC-----TTGGTACTT-----------------------TTCTAGACCCAAACCAATGGAATCTTTGA---------GCCTTTTGACACCTTATATATAATGAAACAGAATAACCTGTTTCAAGGTCTTGCAGGCTGGCATGAGGAAGATCAG---------GCCTTCTGAATACCAAACAGGTCATTGCTGTCTCTACCACACTGAAGGACTTCACTTTATTA---------TGGTCACCAGAGCAACACTGGGAGTTCACTCATTTTCATTGGATCAATATACTATAAATCTATGCCAAGGACACTTGGAATTACAAAGAGTCCTCAGCTCTGTTCTGAACTGAGCTAAAGTACAATATGCATGGTGGGAAGGTTTCCATTGCAATGCAATAAATATTGCAGTTGCAGAGTTCTTCTTAT-ATAATGACAAACCCTTTGAAAACATTTATGATTCTGTAAT-AGAACTGAAATACAGAAAAATGGCAGAAGCATCCAAGTTGGAAGGTTACTGTCACCTTTTAGTTGAGGCAAACCC-CACCTTTAAGGAT---GTTCGCTCCCCAAGAAACAGCGTGGTTAGAAGACTCAGGTCACCACTTAAGAC---ATTTTATTTT-----------TCTTCCCAGGTTGTTACCAATGAAGTGGGTGGGAGGAAATAGAGAATTATTCCTAAACTAGTGGAC----TCTAGGTAGAACTTGTCTCTCTGACTCAAG-GTTCTGGCTTTAGAGATTTCACCCCACTGCTTGATCA------GTATGATGATTAGACAGCAAGGCAGATGGTAGGAG-----AGGGCAGGAGTCAGTGTGCCAGCAGGCTCTCCTTTACA-----GAGTACTCCAGGCCTTTCAACCTCAGGCAGAACCCGCAGAGCACAGGCAGGAGAAGAGATCCACAAACAGCACATGTGAGCCCAGGACTTCTCAAGCCCTTCAGCATTTCCCGATCTTCTTCAGTCCCTCTTTTCCCCAAGAATGCAAACCCCACATGGAGTCAGGGCAAAGCCCAGTTCCCATGCTCTGCTGTTTTCCCAAAGTCCCATTGTTCTATAGCTGCCTGACCTGGCTGTCAGCATTCACATTAATACTGATGGCTATGCTGCAAGGCACACACCAGCCAAACACTGGCAGAGCTCTGC--------TTGAGC---CGGTCTCCAAGTAGCAACCAAGGGTGGGAATACAGGCTAGAGTCTGTTTCATGCTGATGAGAACTGTTGAAAAGGCAGGTAGGAAATAGGTGGATCCCAAAGTCTTTTCTCAATGGACTCTTAAGGCCTTCGGTTGTTTGTACACGCTGTGGATTCCCTAGAATCTTAAGGTCTTTGTTGTTTATACATGGTATGGACCCCCTGGCTCCCAGTC---------TCACACCTTCGAGGTTTTATAGCACTGTATTCCTTCCTTGCTT---TGTTTTCATTGTGGTGTTCATTTTCTTCCATTTTTCTTCCTGGTAGGTTTAGAGTGAAGCAGCCCCCACCCAGCACTGGACTGAAAGTGACATATAAACCTGGGCCTGTAAGTTCATATTATCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGCATGCACACATGTGAACATGTATGTTTACATTTTAGTTGGCTTTTATACCATCATCCTGAATTCCTTCATTTTATA
s HiC_scaffold_1 110080871 2121 - 233722169 ATTACAGTGTTAGATTATTCTGAATTTAGATATGTATTCACTTGTACCAGCAAGTTTTATAGTTGCATGTATATTACTGATAGTAATTTCAGG--TTTTACTTCTGCTCAGAGAACTTCCTTATGCATTTGTTTTGCAAAACAGATTCAGtgattgtgaattctttcatctttTACTTGT--ATAACATTTTATGTCTCTATTATTTCTGAAAGACAGCTTTGCTGTGTATAGT---CTTAACTGgtaggttttttgtttcttttgtcagTTTGAACATATCCTCCCTTT--TTTGTTGTTCAGCAGGTATTTGCTGGTAAATCTGATGATAATCTAACAGGGATCCCTTCCTATGTG-CTTGATGCTTTCCTCTTCCTGTcatgtaaattattttacttttg-----gaaGT------ACTTCTAATTACATTGTTTCTGCACAAttgaagcaaaagggaaaaaccCTAGTCTGCAGGGTCATTTTTGCTATGAAGGTCTTACTTAGAATTAATATCAATAACCTAATTCATAGTC---TGTACTGACAG--CTGAAAATATATGTGAGCTGGAATTTGATGACAAGGAGTCAGTCTTTCATTTTCAGGTCAAACCAATGGCATCTCAGAATTTGCAAAGACCTTAGAGACTTTCTATAGGAAGAAAT----TGACTTATTTTAAGGTCTTACAGGCTAGT----GAGAGACTAGACTTCACTAGCTTCCTGAGCATCA----GATCGTTAC-----CTCACACATGTAGGTAATTCGCTGAACTAACACAGGTATGGTTATCAGTTTCACA-TGGGACTTCGGTCTTTTCTACTGGGTCAATATTATACCA-CATATACCAAGACCACTCTCAATTACAAAAATGCC----CTCTATTTCTAATTAAATTTAAACATGGGggagaaagtgaaaaaa---acatt-taatggaataaatatttcagttgtagagttatttttattataatggaAAACTCTTT-AAGATAATTGTAATTCTCTACTTGGAAATCAGGTGAAACAAAATGACAGTATCACCCAGTTTGAAAGATCATTGTCATCTTTTATTTGAGGCAAACCCTCAACTTCAAGAATAATGTTTGCTTCCTAAAAAGCGACCTGCTGAGG-GACTCAGCCCAGCAGTTCAGACTTTATTGGATTTTGGTTGTTGTAGTATTCTTATATTTTCACAAC--AACTGGATGAGATGAAATAGAGAGTTAACCTCAAACTAATGAAACTCATCCATGCAGAACCTATCTCTCCAAGTATAGCATTCTAGTTTTAGAGATTTCACTCTACAGCTTGTTAAATTCAGGCACAATGGGGAGACAGCAAAGTTGATGTCAGAAGGGCTGAGGATGGGGGTCCATGTGGAGGTAGGCTCTCCTTGGCATTTTAATTTACTCCAGGTCTCTAACCCTCAGGCACAATCCACAAACcacaggaagggaaagagatcAATAAGCACCATGTGTGAGC--AGAGCTTTTCAAGTTCTTCAATATTTTCTAAGCCCTTTCTGTTCCTCCTCTCCCTGAACATGCAAGCCCCATACCAAGACAGAGTAA-GACTGGCTCCTATGCTCCATTGCCTTccaaaaaggcctttattcttCAGCTTAATGATCTGGCTGCCAGCATTTGCACTCACACTGGCCGCT-TTCTGAAATGCACACACTGGCCAAATGC--ATACAACTCTGCATCCAGGCTTGAGCGGCTGGTCAGCAACCAACAACAAAGGCTTGAAATTCAGGTTGGACTCTGTTTTGTGCTGATAAAAACTTTTGGAAAAGCAGTAATGAAATGGGC----CCTGAATTCTTTTTCCAACTGAATAGTAA------------------------------------------------CACTGTTTTCTA---AGGGTATGGACACC-TGGCTCCTATATAGCAAATATTAACACCTCTCTCATTTTATAAC---GTCCTGATTAGCTGCTCATGTGCTTTTACTGTGGCATAAATTTATACCTGTCTTTATTCCTGGCAGATTTAGAGTGAAACAACCCCCACCCAGCACTGGACTGAAAGTTTCCTACAAACCCGGACCTGTAAGTCC---------TATGTGt-tatctg-----gtgtgtgtgtgtgtgtgtgtgtataca-atgTACATATGAATGTGTATGTTTCCAATGAAGtgagctattttttcttttttttttttttttttttttcaca

a score=34517
s chr3           100120917 1776 + 160039680 TGACTTTGCTACATTGTCAAAAATGGGATGTTTCGTTTTTAAAAAGTGAATATTTA-TTTATATTCCTACTT--------ACTTTCAC---AATATATATTT--AGAAATGTTATATAAGATAAACACAAGTTTATCTCAAATTAAAACATAACCATCTTGTGAGCACATCACCTGACGGCTTCACCAGGCTATTCATCTC--TCAGTAACTGCTGGACTCCTGTCATGTGCTACTAATAGAGCCAGAGAAGAAGGATGGCATGCAGGAACTTAACAGGGTGGGCGTGCAGCAGGCACTTAGA-TAGGTATGGCCAG-------AATGAAGTAGGTACG----CCAGTGGGCTCACAAAT-----------------------------------TTTCAGGCACAGAAATGGGTGTATGGGGCTCAGGAGAACAGCAAGGGTCCCATAGCCACTAAAGCAGCCACACTTGTTACTTA----CATTCAGTGGTCAACTTAAGTGCACTGCAGAGTCTATCGGCTTCTTGCAAAGACCGTCTCGCACCA------GGCAAGGCTGGGCATCAATGCTCTGAACCTTGTTTTTTTCAGCTGGTCTATGAAGGTGTGCAAACCAGATGGTTTTTTTTTATTACACTCCTACTTTGC-CTA-----TCACAATCTACAGCAGAACAGTAAGACACAGGCTGAAATTCTAGAGATATGC--------CAGCATTGACATTATATTCACAAATCCATG---------CCTATTC----------ATTTTTTCTGAAATAACTCACCACTGTACGATGTCAAGATGTCAGAATGCTggggccagtgagatggctcagcaggttaaggtgcttgtcaccaagcctcaagacctgagccatggggcaaaagcagagccaaccccaacccctgaaagttgtcctccaacctccacacacAGTTTTCATGGCAAATGTGTGTATCTACGTGCAGGCCTGTGCACCCATATCCCCAAATAGACATATATTAAAAAGATGTCCAACTCTTGACAACATAAAGAAAAAACA----TCAAAGCAAGCC----CTTCTACTGTTTCAAGAAGTTAGTAAATCTCATTTTAATCTAAAGAACAGATTGTTCCAACAGCT-AAGTGACTGCTGGATCAACCTTTATAAGTA---GTAAAAACTCAGTGTGTATTCTTTGAAGCTCACCACAC--TATAAGGGTATTTCTTTCCCCTTTATGAAAGTAGGTTTTGGCTCTGACAAAAAACTATAATCTATAATCTCCTGTCTATGTAAATCTACCCACTGCTCAGCTTGGTTAGCTGCCAGCACTGAGAGAATGAGCCCCAATCCTGGGTAGCAGTG----GGGGCACCACTCCAGCTCTCC---TGTGGGTTTTCATCACTACCCA--TCCGTTCTGATTGCTGGACTTGGAGG---ACCAAGCACGGGACTTTGAGAAACAGTGTTGGGATCTGCTCCAGCACACATACCCATACACTGTGAAAAAAAGAAAGAAAGAAACAGTTTTCAATTCTATTATTTATAAAACTGTATTTACAATTTCCATTTGTATTTAATTGCTCTCCATGTGGTAGTGTGTGATTTATTCATTATTT-TAGATAACTGTTCCCAAGTCTGCTTTTTAACACCAGCCTCCTGGACAGGCAGCTTAGAAACATAAACACGTCTTCCTTTCCTGGCTAGTGTGCCTTCCAAGAACAAAGCAAAGCAGCCCAATGCCTTGCTGCATT---TCTTCACTATATATTAAGTTTCTTCTTTGTTAGTACAAACCTCTTCCTCTCTTTCAGACATAAGCAGT-TGGTATCTACACTAATTCTGTCTCCCTCTACTGGCCCCATCACCCTCCACATCCTGTATTAGAATCCCAGAGACCAA
s HiC_scaffold_1 110083541 1619 - 233722169 TGATTTtgatatatt-tctaaaatga--------------aaaagatgtataTTAAATCTATATTCCCATTTTAATCTATATTCCCATTTTAATCTATATTCCCAGAAGCACAGAATGATGTAAACAAAAATGTGTCTCAGAACATAACAAAATCATACTTAGCAATCTTGTCCTGGTG-CTTTAATACTCCCTTCATCTCACTCAGCAA-------ACTTCC--CATAGGCCACTGAGAG-----GATACAGAGTAAAGCACACAGGAAGCTTACAGAACGGGTACATAGCAAGTACTCAAAATATGCGTGACCAGTAAACAGGATGAAATAGACACAAGACCCATTGA--TCATAGATAGGAAAAATGCATCAGCTCCTGAGAACTATCGGCGTGTCCGGCCCTGTAACATGCACATAGAGCTCCGTGCATCGGAAAGTCTC-----------AAAATGTACTCAGTTGTTACCCATTGGCACAGAAAGATCAGTTTCAG-GTAGCACAAAGACTTTCCGCTTTTTGTCATGACTATGCCACCCAACAGCTCAAAGATGTTGACGGTTAAGGCTATGAACCTTgctttcctcatcta-taaataaAAGAGGTTAGACTAAATAATCTT---------AGCCCCTGCGTAGTGCTAATATTTCATGATCTATGGAAAAACAGTCATATGTGAGCTGAAACCCCAGACATAAACACACattacagcgcctgcctggcaagcgcaaggccttgagttcaattcctgttacaaaaaaaaaattatttttgaaataatttatcacTGTACTAAGTGAAGATTTCAGAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTGCAAcataaagcaaaaccaaaaatcaaagcaAGTCTTTTCTTACACTAATCTGGAAAGTTATTAAATCTCATTTGAATCTAAAGTAGAGATTGTGCCAATAGTTGAAATAACCGTTGGCTCAACCTTTAAAAGTACGAAAAAAAACCCCATCTGTATTCTTTGAAGTTCACTATATATTGttaggggttttttttcc--tttttgatggtAGGTTTTGGGGCTG-CAAAAAA-TACAATCTATAGGCTTCTCCATATGTAAATATGACCACTGTTCAGCTTGGTGAGTTGCCAGCACTAAATGAATATGCTCAAAGCCTGAGCAAACCTGCACCATGGCACCTTTCCAGCTCTCCTCATGCGGCGTGTCGTCATCACCCAGGCCTGTTTTGATTGTTGGGTTTGGAGGAATACAGGGTCCGATTCTCAGAACAGAAATGTT-GGATCCCCTCCAGGATGCATGC----ACAGtgttgaaaaaa-----atggaaacatttttcatttctgttatttaaa------tttgaaaaaatttcatttgt-ttcaatTGTTTTCCATGTGGTGGTTTctgatttactctttttttccaaataagtgTTCCCAACTCGGCTTTTTAA-ACCCACCTCCTGGAGAGACAGCTTAGAAACCAAAGCAACTCTT-TTTTCCTATCTAGTTTTCTTTTCAAGAAACAAGGCAAGAAGCCC-CTGCCTTGCTGAGTTTCCTCTTCATTACATATCAGGTTTCTCCTTTGTTGGTACAAGCCTCTTCC------ATAGACCTAAGCAGTCTGGCATTTAAACTAATTCTGTCTCCCTCTACTGGCTC--TCACTTTACACATCCTGAAATGGAATAACACAGACCAA

a score=17351
s chr3           100123994 341 + 160039680 tGCTTATATTTACTAGTGCCAAAtttatggatgagaaaactgaagtttagagaatttaggtgtgttgtcaaaattagttttaaagccagtaTTTGA-----------------------TGTCTTACAGGTGGCTGCTGGTTTGCAAGCAGAGCTAAAGGTAGAGCTTTTTGCCATGGCTGTGGGTGAAGACGGTGCCAAGGGCTCAGCACACATCTCCCACAATATCGAAATCATGACGGAGCATGATGTTCTGTTCTTACCTGTGGAAGCAAATATCCTTTAGAGCTCAGGTTTTGTAACCACACATAGTGCAGAAATGATGAAAGGAACTAAGAAAACATGGAAGACAAAATGGTCTTCAT
s HiC_scaffold_1 110085478 356 - 233722169 TGGCTACCTTTTTTAGTGCCaaatttataaatgagaaacTTGAAGACTAGATGgtttaagtaacttgcccaaattaatattaaaatcagGATATGAAATCACGTTATGTGTGACAACTGTGTCTTACAGGTTGCAGCTGGTTTGCAGGTAGAGCTAAAGGTGGAGTTATTTGCCATGGCTGTTGGAGAAGGTGGTATCAAAGGATTGTCACACATCTCTCACAATATTGAGATTATGACTGAGCacgatgttttgtttttacccgTGGAAGCAAATATCCTTTAATGTTCAATTTTACTAATCATATATAGTACATAAGTTATGAGTG-----ACAAACACATGGAAGCCAAAA---TCTTCAT

a score=13223
s chr3           100125043 520 + 160039680 AATCAACATGTTGATGTGGTCTGGAGCCTG---GTGGTGATGACCTCTCATAGAGAGACCGGGACATTGGAAAAGAAAGAATCACACAGTGGACAAAAGGCAAAAACACAAGGATCC-------AGGTCCTGTACCCAAGGATGTGTGGGCAGGATTTGCCGTACCAGCAGGCTACCCACCATGAGCTAATGCTGCTG-------GAGACTCTGATTTTAAAATGTTATTTGTATCTGTATA------------------AAAGATCATAGTC----CTTAATGAGTATTTTACCAGTTTTAACAAGCAGTAACTATGACAATCGACCAAAAAATCTTCCCCAGGGAAAAGAAAATCCCATGGTCTTCAGGACTTCCACAATCTCCTCCTCTTCACTTGGAGTCGTCATGTCTCAAAAGGCCACTCATCATT-AGACCTGTAAGTAGTGAGTGCCATGTAG----CCAACCGCTCACGCCTCGGACCTCAGGCCTCAGGGGTTCCCCTGATCTCTTACAGCCAAAAAGGAA--AATGTTTT------CAGAATTTACATtttttttttccat
s HiC_scaffold_1 110088105 552 - 233722169 AATCTAGATGTTGATATGGTTTGAGACCTGCTTATGGTGATGGATTTTTATAGATAAGCCGgg-cacaggaaaaaaatg---taaactggGGA--------GAAGAAACTGGTATTTGTTCTTTAATTCCTACACCTTTGTATGtg------gaatttgcattttaa--aagcacTTAAAATTGAACTAACATTGCTATACATAAGATTTTGTGATTCTAAAGTGTCATTTGAGTTTGAATGTACAAACaattttttcatgaaaatcaTAGTCTTTCCTTAACAAGTATTTTACCAGTTTTAACCAGCAGCAATTATGATAATCGACCAAAAGATTTTCCCCAGGGAAAAGAAAATCCCATGGTCCAGACAACGTCTACAATTTCTTCTGCTGCACTTGGAGTCGTCATGTCACGTAGTATTTCTCCACATTAAGTCCAGTAAGTAATAAATGGGAATTCGATTATTAACTATTCAAAGTTAAGGCCTCTGACTTCACATTCGTTCCCTGTAACTTCCACCCAGAAATCAATGAATGACTTGgcccaaacaaatgaaaatttttgtttccat

a score=32519
s chr3           100138046 2989 + 160039680 AAAAAAGCCTAGATCCAAAGTTATCTGAGTTAATCTACTTTTTTCTAGATATCCCTACTTTTCAAATTCCTACCATGTAGACATACATATATAAATAC-----------------------CAGACCCCTCCCCTAATAT------------------------TCAGGGAACCAGCAAGTCATTTTAAGTGG------TTTTAATGAAAAAGCTATTGTATTTCCAAAAGTACAAACAGCATTATGACCTTACATGCAGACTCACCAACC-------TGCACTGGTGTAAGCAGGCAGCTCTTAGCAGGCC--ATCATCCCTTTCAGCCCCAG---TCCATGGCGCTTCCTTTAGAGGACAATGACACACACGGTAAACAGAAAAGCTCTAATACAAATAATCTGCCATAAATATGAGACACTTCGGAATCAAATACACAATTAAAAAATATTATTTTGCTTCTTGACACAATTTAAAGGTCCAACTCTGAAAAATGCA---GATTTTTAAACTAAATCCGTCCTTTTCAAAAGATGAAAGACAGT--AGTCACAGCCATGT--TGG--TTTCTTCAACCAAGGCTGACATCTGTACCCCAAGATCTACAACATGATCTTTT----TTTGGTATTTTTATGTTG---CCAACTCCACAACAGCTCAGTTTATGTGTACGCTCCTTTGAGAAGAAGCAGGAAAAAACACTGCATTCCAGTTCTAAGTCAGTGTTAAAATCATCCTTTTCCTGTTTTTTCGTTTTTTCTTCTTCTCTTCCAAGTGACTAGTAGCTTCTGCAAAAAACATCACTTCACTCTTTGCTTCACACTCTCTCTTGAGATAATCGAGACCAGCCATATTGAAGCCAATGGCATCCTGGAGAAGAATACAAAAAAGTAATCTTT-AGT-CAGTGTAGCAGCGTCTGAG----TGGGCAC-----------------TGTCTTGTTTCCTTAGCTCACTAAGTGCTTCTGTTG--TCAGTGTTATAAAAACCCTATCTCTGCAACAGA--CAACAGAAAGCTTACCCTGACTACAGATATAAGTCTGTTTGGTATTGCC----------CAGCATACGGTA------------------------------------CATTAACGTGTCTACA-----------------------------------ACAGACACTTACCTGGACTTGTCTGACTTTTGAAATAGTTGTTTCCTTTAGTTTCTCTATCACGGGCACAAGCATCTGGTTGCTGGTGATCTGGCCAAAGTGAATCCTAAAAGAAA-----ACAGTCGTGCTGCTGCAAAGAGAGGATCT-GCCCTACCTGTCCCTCCTCCAAACAGTCAACAGATG-ACAACCCAACCACCAACAAAAACAAG---------------------------------AACAAAAATC--------ACCCAAGTGTCCCACC---------ATT---------------------CTTGAAAAATGCAACGTTATATCTGGTAA----------TACAGTAACA-----TCCTCCCTCAGAGATCTAGCA-CAGGACCAGAGACT----GCAATGGGAAGCTGGAGATAGAATGTAAAC--AATGCCAGCCATGgggactgctgagagctcagtcagtaaggtgcttgccatacaagcatgag-------gacccat-gcaaaaagatgagcatggtggctcatca------------ctgcaatcctggcactaaggcaaggctactagttattgggcagctcaggctgtacgaggccagcctgggct---------------agaatgaagtcctgtctcaaaaaacCAAAGgccagctgtggtggcatacacctgaaatccta-----gcctgcagaatggggaggtgggcaagtccgaggtcagcctggtctct-----ctatatagatattgcatggcagacagggataaatagtgaaagcctgtctgaaaacaagcaaaaTTAGGCCAATTCACCAAATAGTCACTTTATCAAACAGCTGTTTAACTACGTGTGTATTCCTTAGTTCCCCTCCTTTTGTCCCCTCCACTTCCTTTT---------GTGCCCGTAGATACCTACAGACACTAACTGGCTATTTTTAAAATGTTGCGAACAAAGCTGACTAGCCTAGGCTTAGCAATTTAAAAGCCAAACAGGTGGAGTAAACTGGCGTCTAGTGGATAATCTACCTAGCCTCCTTAGACTGCATCCT-CAACTACAGCTTACAGTGACTCTGAAAAGAG-GAGCCAGCAGGATCCTTGTTTTAAAGGCAGGAATGATTACCTAATGGCAAGAG------CTATTTTGTAACA--------------GTCTCCAAAAC-GAAACACAAAATTTGTAATCCCCAAACACTGCCAGCCTCAGCTGGTGCACAGCT--GGAGCACTGTGGTGAAGAGTCAGTAT--TTGTAAGAACATGTTACCTGAGGAGAAAAAAGAGGCACCGGCACAAGAGCTCGACATCCAAGCCCGTCTGGATGAATTCATTGAACAGTGTAAGAACGTCTGGGACATAGGAGAATGGCAGCACAAGCAGGGCCTCTTCTAGTTCACTG-AGGAGGAAACGCAAAC------CATCACACTCCTTAGCGCTATCAGGTACTCGG---CTTCCCTTACCGCTTGCTTTTCCTTTTGTGAATTCTGTCCACTCAGAGTTAAAT--ATTCACTTACACTCAAAATGATTCTTCTAAATGTCTTTTACACTCAACACCATCCGTTTAGAGTATGTTAGTCCCTAGCATAAAGGGAAAACCTAAGTATTGCAGATAA-----AGTGCTCACTATGCCTTGCTGAAAACTCCACTCTGTCCCACTTCATGATGGTTCTCTCACCACACACATGCACACAAACTGCTAATCTGTCTATTGCGTATGCACAGTGTGCATGAATACTGACTGTACTATATACTTGTGTATATGGATGTGCAAGTGTGCATATGTATTTCAAGGCTTTCGAGTCTGTGATGATGACTGGGTAATTGAGTCTCACACCAATCTTTCACCATTTGATTTTGCTTCTTCTATA----------------ACTAGTTCC----AGTACAATGCC-----ACCACTTCCAGTTAGAAGACGCAAGAGGATTTCAGTTTGGATCA-AAGTCTCTTCCTTAGTTTA--ACAGTTATCACCCTTACGAACTGAACCCTCCAGTCTTGGCCCGTGTGT-CTGCACCTCTATTCTCCAGGCCCCTTTACGTTT--CTAACGAAAGCTCGGCAGTATCCTCAGGCAGCTCTACCCCTTTGTCAGGGTCAC-TGTGCACATTACAAT--TTAGAAAAATAAACTTCTTTATATCAAA
s HiC_scaffold_1 110094337 3021 - 233722169 aaCAATGATTAGGTTCAAAGT-ATATGTGTTAATCT-CTTTTCCTAGGATGCTCCCACCTTCCCAAatctacacatgcatgcacacacacacactcacacacatacacgcacgcGTGCACACAAATTCCCACACAGACGTATACACACATGATCTACAAATTCCTCAGAAACTCAGCAAGT-ATCTTAGCTTGATTACTCTTTAATGACCAa-ctattttatttggaaaagtataaagagaaataagatgttaTATACAGATACATTAACCAGGAAGATGTTATGTTTCAAGAAGGCTGCTCTTGATAATTTTTACGGTCCTTTTCAGGTCCAAAGTTCTATGACACGGCATTTA--------------------TGGACAGAAGA-------------CAGTCGTTTATGCATCTGA---------------------------------------TTGTCTCAAAAGAC--------GGTCAAACCTTTGAAagttcaaatgatttttaaa--acagtcaTGCTTTCAAAAGCAAGGAATGGTGCCAAATCATAGCCCTGTGCTGGCATTTCCTCAGGCAGAGGTGGGAGGTGCGTTCTGAGATCTGCAGCAAAGTCTTCTATTGTTTAGTACTTTTAAGATGATCCCGACTGCACCACTGCTTAGTTGAAAAGT-----TTTTTTAG--------GCAAAAGGCACCAAACTTCCCTTCTAAGTCAGTGTTAAAATCAtcttctccctctttttcctcttcctcttcttctcttccaaCTGGCTTGTAGCTTCAGCAAAAAACATGATTTCACTTTTCGCCTCACATTCCCTCCTGAGATAATCAAGACCTGCCATATTGAAGCCAATAACATCCTAGGGAAGAAAACAAACTCCTGATCTTTCAGTCCAGCACAGCAGCATATGTGAGCCGGGGCACAATAGCTTGAGATGTTATGACTTGTT--CTTCTCTCGCTAAACAattctcttgttttaattttttag-------ctCATTATACCAGATCCAACAAAAATTTCATCTCAA--ATAGATTTACATCTGGCTGGTATTGCTGTAGACAAGACAACATACTATACTACTTCTAAGTCACATACGTGCTAGGATTTTGCCTCATTATTGTATCTTTACACAAAGATACTTATATCTTTGTGTATCTTTATACAAAGATACTTACCCGGACTTGTCTGACTTTCAAGATAgttgtttcctttaatttttctatcACTGGCACAAGCATTTGGTTGCTAGTGATCTGTCCGAAATGAATCCtaataggaaaaaatacagtCACGTTGCC---AAGAGCAGTTTTGGTCCTGGATGACCTTCCTAGCAGCAATAAATAGTTGTAATATCAAAGCAATAGCAACAACAGATTTATTTCCCCATATCATCGAAGTAAAGCTTCTAGCAAAAATTAAAAGCTGAAAAAAGTTTCTTTCCTTATCAGATATTAGATATACAATTTgatgacaatttaaaaaatgttattctaCACCTTATGCATGCTATACTTATTGCAAAActaattcttttctcattaatttacCAGGATGACTGCAGATTTTTGACAATGGTATTTTGTAGAAAGCTTAGCATCAGAATGAGGTTTTTAGGAATTGCCAACATTCC------TAAGTT--TTtccacagaaacaaaagaaagtctGACCAATAGTGCTGAGATAATC-TAATGATCCGTCAGGCAGTGCTCATCTACAA-CCTGG---------AATGCTACAAG-TATTCAGTGTTTCTCACTGTG-------AGCCTGATTCAATAGTACATTGCAGAACATGAATTTCTGCCTTCA------------CAACT-----------TGCCCGAAACTATAAAAATGGCtacagaa----aaagtaaatatatctG--------CTATTCTCTTGGAACTATCCTGATA-------------AAGAATGGAGAGTGAAGA---ATCATAAAAAGAGGTCAATTCTCTAAATTCACTAAATAATTATTTAGTAAA--------TTCACTCAATATAC-CTGCTTAG--CCACTGGTTTTGGCTAACTAGTTTCTGTTTCTAGTAAGAGTATTTGAAGGTACATTCAA---------------TTTTTCTCTATTGC--------TCTACTA--CTGGACT--GCATCCTGAAACCTAATTAAG-------------------ATGGAT--------TACCATTTCTGAACAATATCTTACCACTACGTATTA--------CTTAACAGAGTGGGTCATTACTATCCCTGTTGTAAAGGCAAGAAT-ATTTTCAAAGAGTAAGAAGGACGCCTGTCAGATGACATTGAAACTCTGTATGTTTCTGAAACTGAAACATACTATTTTTAACCCCAAAGTGCTGGTGGCTTCAGTTAACATAGCACTCAGCAGATCTTCTGAGGAGACACTGTATCCTTGCAAAAGAATGTTAcctgaggagaaagaagaggcatCTACATATAAGTTCAATATCAGATCCCAGCTGAATGAACTCGTTGAAGAGTTTAAGAATGTCTGGGACATAGGAGAAAGGCAGCACAAGCAGAGACTCTTCCagttcactgaaaaagaaaacataaatattgaaaatatcgGTCTTTAACGTGGCCAATTACTAAATCTTTTCTCTTACTAC-----TTTTCTACTG-----------CTTTCAAACTTGAATAGATCTACCTATA---AAGGATGTGCTTTGCAATGTTTTTGAatctta----------tatttaatattttaatt------------------------tatttgaaatggTGTTTGGTGCACAGCAGGCTAGAT---AAACAccact-tctcaaactttttaataaatattc-------caCGTGCATACGA--------------TACTTTTTAGAAACACCATatattaa-----------------atttgtgtgtctg----------------tgtgttttccAGAGATTTTGAGATCATGATGATGATTG-----CTGATTCTGACACTGTCCCTACACTATTTAATTTTGCTAATATCATAGTTTTTAATCTCAGAGACTAGCTCCTTCTAGAATCAGGTCTATTTGTAAATCCTAATTGATAATCTTAAGAGAATTTGAATTGGGATTAGAAATCTATTATTTGGTTTAAGAAaatta-catctttaaaatataGATTCTT---TCCAGGCTGTAATGTATTATACCTCAATAAATGATTCTCATTTACATTTTGCTAGTGAAATTTCATCATTATCTTGCAATGGCCTTA----TTTATTTAAGTTATATGTAGATGTTTTGATTCTCTGtaaaaaaatcttctttaagTCAAA

a score=10008
s chr3           100141424  851 + 160039680 AATTGTTATCTACCAAAAGATTCACAATTAAAATTGAAAGAAAGAAAACTATCAATTCCAACTT----GTATTTCACACTCAGA----CATCCAGTAACGGCTGTCCTGTCAAGTTACAATAGTATGCTAGGACTTACCTTGACCTGATCCCTTTAAAAGTCTCTAACACATACGCTGAAGGCTACAAAGGAAGGAC-AGCAGCATTAGTGAAGCTCCCGA------------------GTGCTTTC------CTCAGGGCCTACGGCCA---TCCGTCTTGAGAGAAGAGGCTAAGATGAC-AGTGCTGTGTGGGCTTGCAGTTAGCCATA-CAGGGTTATAAGTAAGCTATGTCCTTATTTATGTCCTTTATGACTACACTTCCTTGTAAGCTGGGCCTGTTTCAT-ATCTATGCAATGAAGATA--------TTCTGAGATTACTGTAATGA-TAATACATGCAAATAAT------------TAGCAACTCCCAGATAAGCATGTTCTCCTAATACACCCCT---------TCCTTCTTCATGAC-------------GGGTTTTGTCAATTGTTCCTA----------------------------------------CAAAGATTTTTATCAGAGGTCACGTACAGACGAGTCTACAGAGAGCTGT----------GAATGCTGGG---CACACAAAAGCACTAACGGTGGA---------AGAGGCAGGCTGGTCTAGCCCCGACGCAT----------CTG---------------------------GGGAAGT----------------------------------------------CTCACCA--------GCAGCCTTTTGAGATGCAAGC-TGTTTTA-----------------------GAAG-----ACACTGAG-----ACTTTTGGAAACAAAGGGACTTCCCGGAGTACATACCCCCAAATCATAATGCCTCCTCACTCCCTCTCATCTCTGAAGTTAACCCCTGACCCACCAAGGAGAAACAGACATCCTACTCACAGAAATATTGCCATGAGCCATCAGGATGGGGTTGACAGGAAGAGGAACCTACAAAGACGTTAT
s HiC_scaffold_1 110098393 1076 - 233722169 AATTATTCTGTATTAACTGTTTGACA--TAAACTTCTAAGGAAGATAACCATCAATTgtaatttctctttatttcatgTTCACAAGAGCACTCAATCTATGTTGCCATATGATGA-ATGACAGCACACTAGGACTCACCTTGATTTGATCCCCTTAAAAATCTCTAATACATAAGCTGAAGGCTAGAAAAGAAGATTTAACACCATTAATGATATTCTTGGTTGGTTTCTGTTAACATTGTGCTTTCTATCACCTAAAAAACAAAGACCCCTCTCTCATTTGAGAAACTGTTCTAACATGCCGAGACCTGCACCAGCCCACAGTCAGCCAGATCCAGGTTCAAAATGAGCCGAGCCTTTACCAAC------------------------TAAGTAgagtcattttctttatctataaaatgaaccTAACACTGACTCGTAAGAATACTGTGATGAATAAGACACACAAGTAAAATGCTAAGTAAACAGTGATTACTAGATAAGCATATTCTTCCTTTACAGATTTATTTGAAAGTTCATTTAAATGAACAGAATCTTTAGAGGGCTTTGGATACTGACCCAAGTAAGCACTAGACAACAGAAGAACGTCAGTCCAGTCAAACTAAAGTGCTCCTTTGGAATttacacacaagcttaaatatggcAAGATTTCTTTGTAAGAGAAggccaaaatacaaataaatacccaaataaaagacagataacaggaagTGGGGAGATGTAGCCTTTTCACATGAGAAAGAAActgagagatggagggaaaaCAGGGTAGGCAGGGAAGTGAAGAGGATGAAAACAGAGTTAAGaagtgttgtgtacatgtaccaactccacacaaggattGCAattttatgtactgcaaacatgtactaattaaaaaaaaaaaacttgaaaagaaGTTCAAAcactaaagaaatatttttaaagacaaatgatTTTCCCAT-GCATCTGTCTCCAAATTGAAGTGTGTCTCTACTTACTTTCATCTTTAAAA--------------ACCAAGGGAAAGCAGACA--CTACTCACTGAAATATTGCCATAAGCCATCAGGATGGGGTTGATAGGAAGAGGAACCTATGAAGAAATTAT

a score=13020
s chr3           100142425 510 + 160039680 AGTGTGTAACTTGATAGAC-ACGCTTACCTCTTTCCCCGCTGCTTTACAAATGGCTCTGTGTTCTTTCATTTTTGCAGTTTCTTCTCGATGCAGCTCGATGGCCTCCATGATCCTCTCAGCCTACTCAGATGACA-AAGGCAGAG----------ATCATCCCAGTGCACACCCAAGACATGGAGATGGGAAGGCCTGGCTAAT--------GTAGCCTGAATCGGCTTAATAAAAACATGCCAGCTAGGGTGCAATGCAGCATTTACAGTTGTCAGCATGGTT---CTTATT-TTTAATTTGTAAGAAAGACAAAATACCACGGACTCAGATGAAACTA--TATAGAGTCAC--AACAGGGCAGCTTCCA-GAAGAACCGACATGAGCTTCCCTCACTGAGAGTC--CCATGCTGGTCAGACGCAAGACCACGGGCATCAGACAAAGGCAATGATCAA-------CTCCTAGAATTCATCAA-CTTTTGTGCCACACAGAGCTATGTGGCTAACACTGAGTAAGGCTTTTACGAAAAAGTCAGAACCC
s HiC_scaffold_1 110100313 508 - 233722169 AGCTTACAATTTAATGGACTATCATTACCTCTTTGCCTGCAGCTTTACAAATGGCTTtgtgttctttcatttttgcagtttcttctcgGTAAAGCTCAATGGCCTCCATGATCCTCTCAGCCTACTCAAAGGAAAGAAGGCATTATAACATATTCATCACCTCAGGACAC-------------AAATCAGAAGGCCTGACTTATCACGTCAACCAGCTTGAATCAGTTTAATAAACACATGCCAAA-AGAATGCTAAATACCATCTATAAATGTCtg--tggttttatttattatttaatttgtaaagaaaa------------gattAAGGTGAGACTATTTCTGGATTCCTCAAGTAGGGAAGTTTCTAGGAAGACCTAAAAGGTGCTACTTTTAGAAGGAATCAGCCTTCCTTGCTAGAAACCATGCACTGAGC---------AGGTAAAGATTAAGCTTTCCATCTCAAATTTCATCAATCTTTTGCCCCAAAAAG-GCGATTTCACT-ACAC--AGAAACATTTTTACTGAAAATCTGGGGTCC

a score=39469
s chr3           100142946 2668 + 160039680 CAACTTACCGCTTTGACTGTTTCAATTGTCTTCTTCCCAGTGAAATAGTTGTCACCTTGGGTCTCCCCTGGAACCTGCCAGACATAT-GAGATCCTGAACAAGATGGTATTATT--------TTATAAAAATACCATATCACTCTCTCC-----------CATTAA-GGATAGGTACAATA-------------------TTAAATGTTTTATTT-----GTATCATCATGAGCACTATCCTGAAAATGTTTACAATGTATCAAATTTCTGAG-----TCTTTTTAAAATTTTTGTTTTGCTGAATAAATACTATAATTCCTTATAAAGTCTCATTAAGAAAGAAAAAGATGTAATGATAGAATTCTCA-TACTAA-----GTTAA---------TCACAGAAC-TAGCTACACAACTGAATAAAAACACTACATAGAGGCTAACAGTAGAGAGC----AATGCCTCTGGCATCTAGTCTCAATTCC--TCTCCCATATAATTCCCGTA----------TCCCAAAAGATTCACTTACTGCCGGCTGGTCTTCTTTGGCCACGCTCTCCTCATACTCTGCTTCCCTTTGCTGCCAAGAGACACA--CATAAGTTATAATGAGGGGAAA----CAGACTCT--GCAGAGCGAC-TGAGGCAGCGGAAGGGCTTCTCT-CAAAGCATGATGCCAACGGCACCTGAG--TCCACCTGGAC-------CGTGTGGCCCTGGCCTTGGAAATGCCTTCTGTG------------TGAGCTG---------TAACTACACTGGGTGGAAAACCTCAGCAGGGACAGTCTGTAAGTGGCCCCC-----ACCAAACGTGAAGCCACACTCAAAGGTTTTACCATTTCCCTTTCTTCCTCGAGAATAAGAGGCTCTCTCGTTCTCTCCCAGAGTCTCAGCGACTTGTCATGAGATGCTGATACAACGTAGTCTCCACTGGGGCTGACAGCCAAACACCATATTTCCTGGTGGTGTCCCTGGACACAGATAAAACAAAATGACCCAAGGAAATCTAACTTACTCATTGGTTACCACTCGTTTATGCCAGTGGTAGG-GTAAATATTCTTAAAGGAAGTTTTTAAAGTTACtgtggtggttagaataaaaatgtcccccatagacccataggaaacggcagtactaagacgcatggccttattgaacaaagtatgtcactagtgggtagatttggaagtctcagaagatcaaaccaggcctagtggctctcagttcttttcctgctgcctgtggttccagatgtagaactctcagctacctgtccatcatcatacctgcctgcgtgccaccatgcttcccaccgtgacattgggctctacctctgaactataagccagcccaaattaaatgttttcctttataagagttgccatgttcacaatgcctcttcacaggtataagaaccttaactaaggcaAGTACCAATCAAGCCAAACAAGCAAGGGGTTACCTCCAGCGTTTGGATGTGCTCAAACTTGTCTGCATCCCACTGCTTGATCTTGTGGTCCTTCCCAGCGGTGAAGAAGAGGTGAGACTTAGGCACAAAGCGTAGATA-CATCACACTAA--GGGTGGAGAGTAATGTCAGATACTCCAGGCGAGTGAGC--TAGAGCACTCGTACACT----------CATCAGGAATGCCTACTCTACGAAGCTTCTGAGAACAACTAAAAGATCCTTTCAGAGGACTACACCCACCTGTCATCATGTGCAAAGAGAGACCTGTGGCAGTCCCCAAAGTCCAGACCCCAGATTTTCACATTTCTATCAGCAGAACCAGTTGCTATTAGTGCTCCATCCTAT--GGCAAAGAAACAAAATA----TTAGCATTTAA-----TTAAACTAGACAGCT------------------AAAGCTAACCAGAATATTTAATTCATTTC-TTCAAAAATATTATGATAGAGCAA--------AACCATATTCATCTATTCAAAACACCT-GTGCTCAG-----ACTTACAGAGCTGCTTAAAGGTTGGAAAGTGAATGTACGAACTCTGACCCTGTCACAGG-------ACAATATCACAGCCCAGTGCTGTTGTATGCCTTAAGGTCAAGTGATCTGTTCACTCAGTTAAATAAGAAAAGGGCTACTCCGATTCTCTGTTCTCTGCAATGGGATTTGTGGGGAGAGAAGGGAAAGTAAAGAGAAAATGAGGCTAAAAAAGAACCTACTGAAAGGTTTATGACCTA-CTTGTTTAACACACACACCATTCCCTCAAATTCTTCAAATTGCTGTGTTCATACAAGGATCTCACAGCTATGGAATCTATTCGTTCCCCCACTTTTCAAATA--TGCAGTTTTGTTTTGGTTTGGTtttggttttttcaagacagggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaacttagaaatccacctgcctctcaaacatGCAGTTTTAATCATAATGACACAACGAAATAACTGACTCCCAAGAATGAGAGTATTTACACAAAGCAAAATACTACAGTATTCAAA----------TCCTCAACTGTGCTATCCTGAAGCATGAAGGGGCA--CCTCTGAAAAACCATGAACTTCAGGATGTTCTGCCAGTTATGGAATTTAGAGCAG--CAATCTTCCAGAGCCACTGTAGGTGGTTGAAAGGA-------------CTTTAATACTATTTGTTAAACATT-ATCATGTGTATGCTGTGACTATAATACA-GACCTGTGACTTTCTGGAGGAAGCTATAATAAACTCAGCAGAATGACACAAGTGCTGTACGATGGAG---CCCAACCATGAATTAGAAAAGA
s HiC_scaffold_1 110101895 2442 - 233722169 CAACTTACCGCTTTGACTGTTTCAATAGTTTTCTTTCCAGTGAAGTAACTGTCACCTTGAGTTTCTCCTGGAACCTACAAGAAACAAAGCGCCTTTGAACAA-----TACTACTGACAGGTGCTAGAGGAGCAACAAATAAGTCTTTTGTCTATAACAGGCATTAACTTATGCAAACAATAACACAGTTATCAGTTGTCATTAAGTACTTTACTTTATAGACGTTATCATATGAAC-ATCCTGTAAATGCTTAGATTGTG-CAAGTTCCTAAAaatcttctcatttttatttttgttctac--aGTGAATTATATAATTC--TCTAAAGTcgccttttaaaaacaaaagtcagaaTAACA-ATTGCTCAGTACCAAATCTGGTCAACCATTTATCTCACAAAACCTAAATGTATAGTTGAATAAAAACCCTTCACAGATTCGTTC-TTACAGAGCTGAAGATTCCTTGGGAATCTAATCCCAATTCTAGTTCCTCTTACAATTATGGTAAATTTCAAGGTATGAAAAGATTTACTTACAGCTGGTTGGTCTTCTTTGGCCACACTTTCCTCATACTCTGCTTCCCTTTGCTGCCATGAGACATTATCAACAGTTAATTTGAGGTAAAAATCATAGTCtctatgtaaaatgaaataaggCAGTAAGAGGCCTTTCCTTCCAAGCAGTTCTCTAAGGATATCTGCGACTCTACCTGACCTCTCAAACAGGTGACACTGCTCTTGGAAATATCTTCTAGAGACTCTTGGTCCTGAGCTGAAAGAGGCATGACGGCCCTAA-CAGGAAGCTTCAGCTAGGG-AGCCTGTCAGTTACCACCTGCGTATTTAAAATGAAACCAAGCCTGAAT-TCTCAccatctctctttcttcctcGAGAATAAGAGGCTCCCTTGTTCTCTCCCAAAGTCTCAGAGATTTGTCATGAGATGATGATACAACGTAGTCCCCACTGGGGCTCACAGCCAAACACCACACTTCTTGGTGGTGCCCCTGGAGAAAGAAACACCAAGAAAACCCCCAGTAA---GACTCATTCATAGACTGCAACCCGCTTATATTAGTGGGGGACAGACATGTTCCTAACACCAGTTCTTAAA---------------------------------------CCCTGGG--ACAGCA-----------------------GAACAAG----------------------TGGGAG---------------------------------------------GTTACC------TCCAGG----------------GTCTGTATGTGTTCAAATCTGTCTGCATCCCAC--TGCT--------TAATCTTTCGGTCTTTCCCAGCAGTGAAG-----------------------------AAGAGGTGAGA-----------------CTTAGGCACA--AACC---------GCAGGTAC--ATCACGCTGAA-------------------AGTATTCAAAAGTCATCGAACTC-----CAAGTTACTAATAAGTCTT-----------------------------------------CCAAACATACATAGCTTCTGACTAGCTAGGTCTAGAATATT---------------TGACTGTACATTAGAACTTTC---CACTGCTTTCTAAACAACGGACATTGATGCTCTAGGAAA----TGACAGAAGCCAGGGGAGGCCTCT--AAGACTGCACCTACCTGTCATCATGTGCGAAGAGAGACTTATGGCAGTCTCCAAAGTCCAGACCCCAGATTTTCACATTTCTATCAGCAGAGCCAGTTGCTATTAGGGCTCCGTCCTGTAAGAAAGAGAAGCTAAATATTATTTAGTATTTAAATTCTATAAATTAGagaattaatttattaaattaataaaaagttaacCAGAATATTtaactcatttcttttaaaaccatTAAAATAAAGCCAATAATATTAATTTCATCTCTCTACTAAAAGCACCTAATTCTTAATTTTTACCTGTAGAGTTACTTAAAATTCTTAGA--GACTGTATGAATTCTG----TGGCTTGAGTATTCCTAGAGTACCATAGTGCAGGGT-----TATACTTTCATGTAAGATTATCTATTAACTGTGTTAAACAGGAAAGG---------GAGTCTCTAATCTCTGGCATGGAATCGGGGCACAGcacaggaggaaagaggaaacaaTGAGACCAATTAATA---TGTCAGAAAGTTGATGATTTAGCTTGTATCCTCCTAGCACTATTTCCCAGTATCTTTC------CTATGTCAATGCAGAGTTCAAACAGCTTTGTTAT------------GCACTGATCAGACAGCTACAG---------GGTCAGGTTTTTGTCCCTT------------------------------TCTCCCAGactatgcatt--------------------atttttaaatacacattcTTTCC-----------TTTAGTCATAACTAGATATTGGAAAAATGATATTCTGACCAAGAGACTA--TAGATAATGCAAACAACCAC---ATACAAAGACAACTTCCTTCTTACCAGTAA-ATCCTACAGTACAAAGGGGAAATCTTtttaaagtctttcatttttaggATGCTTTGCCAATTACACAATTTCAGACAGTACAATTTAGGAGAGCCACAGCAGTGAGTTACAAGGATTAACTGAGAGTTCTATGAAATTATTCTGAAAAGATTAAACATATTTAAGACAGGATTGTAATACATAATGTACTACTTG-TGGAGAAAG---TCAGACATACAACAGAATGAAACTA----TCTGAAATGAAGACATCAAACCAAGAATTGAGAAAAA

a score=10070
s chr3           100144296 142 + 160039680 AGCCAAACAAGCAAGGGGTTACCTCCAGCGTTTGGATGTGCTCAAACTTGTCTGCATCCCACTGCTTGATCTTGTGGTCCTTCCCAGCGGTGAAGAAGAGGTGAGACTTAGGCACAAAGCGTAGATACATCACACTAAGGGT
s HiC_scaffold_1 110103000 142 - 233722169 AGCAGAACAAGTGGGAGGTTACCTCCAGGGTCTGTATGTGTTCAAATCTGTCTGCATCCCACTGCTTAATCTTTCGGTCTTTCCCAGCAGTGAAGAAGAGGTGAGACTTAGGCACAAACCGCAGGTACATCACGCTGAAAGT

a score=28223
s chr3           100145623 1229 + 160039680 ACTTTACTTACATGGGAGATGTCCATGCATAAAACAGGCAGTTTGTGTCCATACAGTGAGAGAAAAAACTAAACATGAAAGAAAGGATACAATGAATTCATGTTTGTCTACAAAATACAATCT--GTTGCACATGGAGCTAAA-TATAAA---ATTATAGTACTAAACACATATCTGGACTGCTT--------------------------GCTAAGTGAGATTTCCTGTGTCCACTATGGAGACC-CTACGCATACTTGCCAAGAACCCTGAAGCCCAATTAAGAACATCAGGCTACCCAAAAC---CTACCCCTCAGAGTAGGCCTAAACAGACTATCTGGGATAACTGTTTCACAGGTTATCCTGAGGCCCAAGACAGTCCTGAGCAATAACTCGCAGCAGCCTGTACTGAACAACACTTTCAAAG-------------CTG----CTTGTTACGACGGGATAGAGATTTCTATCTATAGA----TCTTCAGAATATGAACTA------GCATATTTATTTA------GTTTTAAAT-----------------AAAACTGATGAACCCTGCAAC---------ACTATTAGTTTCTCAAGCACACT--CAGTGTTTTAGTAAGCATATCTTTAAAAATATTT-CTGGCTATCATCCCAAttcttttttccttaca--ttggaaatagattctcttctcacattgatagatcatgattatggcttccttccc----------tctactactcccagttc-------cctcccacgttcactcccatcctgatccactccctttctgtgtctcattagaaaaagaa---caggcttctaagagataataacAAAAACTATCACATGGGATCACCCCACATTCTTAAGGTCACACAGAAAGACTATTCCCAGACAAA-----CCCATCATACCTTTAAAGTGTCAACATAGAAAACCTTCACAGTGCAGTCCAGCAAAGACACAGCCAGCAGCTTTTGATTGGGAGAGTAGCTGACACACAGGACGTCCTCATCTAGCTGCAAGGTTCGAGTCTGCTTCACAGAAAGTCTG----CCCAGACAG----CATCAAGAAAAAGTA-ACACAGATGAGAATGCCA---------GACAGACAGCTCCAAATCTGACACACAAAGGCATGCAA------ATCAAC-GGTTCTCCA------CTTCATGCTAAAGCCCCACGGAAGTTTCCCCTCACCTCTTCTGGGTACTATTTTTATCTGTCACCAACTCAAAATCCCAGAACTTGACAGCTTTGTCAGCGCCACCTGTCACAAAGCCACGCTGAAAATCAAATGACACTTCAGTTAAAAAACATTTTAGCACAAAAACTTTGCTAAGTACATACAT
s HiC_scaffold_1 110104813 1291 - 233722169 ACTTTACTTACATAAGAGATGTCCATGCATATAACAGGCAGTTTGTGTCCATACAGTGagagaaaaaactaaacataaaagaaaaaatatagataacTC--TTTTATCTACAATATATAGGTATAATTACATGTGggtcaaaaatataaataaaatgcaaaattaaacacattcctagattgtgttttatattttagaagaGTCCCTGAAGACTGGTTAAGATTATCCTTGCCCACTGTACAGCCCACTGCTCACAC----CAAGAAAACTGTCACACAGTGAAAGGAAGGAAGCCCCCAGAGGCTTGCTGCCTGTTAA-------CTGCAAAGATT--CCAGAACACCTGATTTACAAAACATTACCAGGCCCAATCTAGTCAT----ACCGACTC-CAG-AGTTTGggtc---taatattttaaaagacccaAAATGATCCTGAAGTCCAGCCATGTGGAAATACTGCACAATATACCTAGAATGCTCTTCCAACTATGGGCTATGGTAGGCTTTTCTGTTTACAAGACGTTTTAAACCATAACTTGCTTCACACAAAGTTTATAGACCACAGAACTGTTTAAAAATCCTTAGCTTTCCTAGTATACTGACAAGGTTTT--------TATTTACACACAAATTTGCTGGGTGAGAT----AAGGTTACTCCTTTAAAATTTCaaaccaaattctttttt------------------ttgtgggtgtctttttgagacagggttttgttatgc--agttcaggatggcct------tggacTCCC--CGGgattctct---ttcctcagcctcacaagtactgggattacaggcgt-------gtaccaccatgccccacCAT------TCAACCCAAATTCCTAAGGTCagtcagaaa---------caaagaaaatatttccacaaTACCTTTAAGGTGTCAATGTAGAAAATTTTCACAGTACAATCCAGCAAAGACACAGCCAACAGTTTTTGATTGGGAGAGTAACTGACACACAGAACCTCTTCGTCTAGTTGTAAGGTTCGAGTCTGCTTCACAGAAAGTCTAGCAtcacagaaagaagaaatcaagaaaaaaaacatacaaatgcGTACTCCACAAACTCATGGCAGAAAATTCCAAACTCGAGTACGACAGAGATACAAACACTTATCAACAGGTCATTCAATGACTCCTCATTTTTA-----CCCAGAAAAAAAACCTCACCTCTTTTGGGTACTATTTTCATCTTTTACCAACTCAAAGTCCCAGAACTTGACAGATTTATCTGCACCACCTGTCACAAAGCCACGCTGAAAATTAAATGACACATTGATTAAAAACCGTTTTAGTACAGAAATTTTGTTAAGAAGACATGT

a score=12395
s chr3           100148009 720 + 160039680 CCCTGAGAGGAACCTTTCTTAGGCAACTAAACTTGGCAGATCTAAG--ATGTACTCAGAGTGC------AGACGCCCATAGCTTTAAAGCCCGGTGCAGTTACCTGATCTGGAGAAAGAGACATGGACCACAGGGCTCCATCATGGGCAGCTATTGTCTCCAAGAGAGTGCCTGAGGCCAGGTCGTAAAGTTGCAGATTTCCTGTCTGGGAAAGT-------GAACAAAGTTTTAAGGGGCGCATCCACAGACTTCATTACTCATGCCTG---AAGTTAGAAAGCAGTAATTTGGGTCAACTGTTCAGGAAAAAATC-CTGCCTAAA---------TGCTTTCTGCATTCTGTATCTGAAGACATACTGTTCCCAATGAAACACCTAGTTAACAAACGAGGGTGGGACTAATTGCTTTCATACACTGCTGTGGATAGTACAGCCTTGCAGATCTTGATCCTGCCTCTTTTGCTGGTTCCA-----------------TATCACAGCCACAGACAAATCTGAACAGTT----CAAATGGAAACTTAGTAGCCTTTAAATTTTACCTATGCTTTACATGGACCACTCAAGTCTATTGTCACTGCCTAACAAG---TCTCCTCACTGGTTTTGGTTTCTTCTT--TTTGCAACACACTGACAGTGAGA----------------GCCAGAA----------------------------------------------CCCAACCATGACTCTTGCCTAGATGTCTGTATATGCCACAACCCCGGAGTCAGCATTTAACAGACA--------------CTACTAACTTCACAAGCTTCCATGCCACGTGACAGG
s HiC_scaffold_1 110107554 810 - 233722169 cctcaAGAAAAATCATTCTCAGGCAGCAGTTAATAGAAGAGTTGAGGCACATAGCCAGAGTattaaaaaaagtacaaaaagc----aCATCCTGTTTAGTTACCTGATCTGGAGAGAGAGACATGGACCACAAGGCTCCATCATGGGCTTCTATTGTCTCCAGCAGATTTCCTGAGGCCAAGTCATACAGCTGCAACTTCCCTGTCTAGGAAGACACAATAGGTACACAACTCTAATGAGCACAACT-CGATTTTCATGATTTATGCCTATgcaatttagaaaagatt--tcatAATGAAATATCAACACACAATTCATTGCTTAAGGAAATGGCTCGCATCCTTTGTACCCTATCTCAATAAATGCTGTT-------AAATCCTCTGCTGACAC------GTGGAGTCAAC--CTTGGCTGGGCTGCCATG--CTATACAACTGTGCAGCCCACAACCCTGTCACTTTCATTGGTTCCACAACTTTGAAAGAGAAGCATCACAGCCACaggcaaatcaaaacaaacataacCAATGCAAAATCCAAAACCCCT--------CCAGTCCTTTCACTAACCTACCC---CTTACAGTGACTGCTTAACCAATTCTTTCTTTACCG-----GGTTTCACCCTCCTTCACAACATTCTGACAATGAGAAAGATCTACCTACAATGCTAAAAAGGGCAGTGAACTGaagtaaacacataaaaaatttttattgttatcccCCAGTCTGATTCCTGATTAGAGATCTGTAAATGCCACAATCATGACGCTGGCATGTAACACATATGTAGTGCTATAGCCTAGCTATGTGATGAGCTTCTACACCATATGGTGGG

a score=17696
s chr3           100148897 1283 + 160039680 GCTTTCCTAACAACATACAGCACACACACATTTGTTGAAGGATGGATACAAAATCAGTGAAACTTTTAACTGAAATGTTACT--------TCCAACA-GGACCTGGAACAGCTTCCAACATTTT--ATACTTCTTGTTGGACAAGAAATAGCCACTATGGTCTGTTGGTTTCCTAATAAAATGCATGCATATTTGA---------CAAGGGATGAGGATGATATATACTTGCAAAATACTCCTCCAAACCCCCCACAACTGAATACAGCG-ACACACCGAGCACAGCGcaacacttgggaggctgaatccta--agtttgaggcagcctgggctacgaaagtccctgtGTGAGGACAAAGCCATCCCCCATAAACCTTACTGCAGCTTGCTCTCACTACTTGCTTCCGCTGTGAC-TGCTCTCTGCTTATTGTGCACTCCAAGGAAAGCAGGTT---CAGAGCTAAAGCAGATT-TTCGAAGGTTGCAAGGTCACTACGTGGCAGAGCCCTCAGGAGGACTCTA---------CGAGTCTCATCATG----------GCTGAGCA-----GGTGAAGCAGC-------------ATTCTCTACGTTTTGAA-AGATAAACTGAATCCAAATCTTGTCTGCTATGGCTGTCC---CCAAACTG---ATCAGTCTAAGACTGAAGACCTGGTCAGCTTGGCTTTATAT---TGCCATGTTGGGTCAAACCTGG----AAATGTT----ATATTAT----TTAATACTATTATATCTTACCATCTATTAAATCTA-ATTACATACAT-----TTATAAGATATATGTAAGGGTGATCATCAAAATGCTGATGGCAGTTACCTC-TGTACATTTAATTAATGTCCTTCTTTGTAATTTGACATATGGTTTGATATTTTTTTAAACAAG----GAAATAAAACTTTAAAAACATCAAAAAAAGCCAATAAACTATTATCTAGCTCTATTATATTAATTGCCAATATGCCGTTAAAAAATCCA-ATTTCTCAAGGGTCTTTTGAGATGCTAAGCAGAAA-------AGGCCAGGTT--TTTACCTTTGTTCCTATGACCACCTGCCTATCGCCGGGAACGAAGAAGGAGCAGAGAGCATATTCACAAGGCATGGTGCGGATACACTGCAGGGTAGACCTATGAGAGACAAAGGG------------CATGCTAAAGCAACCTGCTTCC-CACCTTAGAAGCCAGTG-----TTTCAATGCA--CGGAGCCACATAGTGACAT-GACACAAG---ACATGTCTAAC---TTTTACCTCACATTTA-TCTCAGTCAAGAGGAAAAATATTATTGACCAAAGCTGGATTTCTTTGGAAAGGAAATTC---ACCATAAAGAAAAGAGATGATACAAAAAAGCAAAGTAAAGA
s HiC_scaffold_1 110109018 1344 - 233722169 GCTTTCCCAACAGAAAAGGGGACA------TTTAtgg--gaataaatgaaaaacaagaaaaaaatttaactcaaATGTTAATGCTGTGTCCCTGACACTGACTTTAAAATCTTTCTAACATTTTCTATACTTTTTGTTAGACAAGAAATATCCACTGTGACAGG--GGCATGCTCATAAGATTCATGCAAATATGGTCCAGGTTTCTGGAAATAATAATGACAAACCCTTGCCAAGCCATTTTCAAAACATCCTACAAATGACTCCAATTTATTCTCCCTGC---------TACTT-----------TACTACCAGCTTGACTTAGGGTCAGTTATTTGATGTGATTTGTGGTCAGTTATTTGTGTCCAATA----TCTGTGCTGAGTCCTTTGCATATTTCATTCC--TGTGAAATGTGTTATCAATACCATTCTACTCAAGAAAACCAGGGCTAACAGAGTTGAAGTAATCTGCTCGAAGGTAACCA--TTATTAAATGCTAGAGC------AAGGATTCTAATATCTGTGTAAATGCCATTATTCTGTTATACTGATAAGCATTCTAAAAGAAGCAGTGAGACTTCATAAAATTACTCATTTTATAAACATGGAATCTTAATTTAAATC-------CCATGCCTGCTCATGCCAAACTGCTTACCAGT-TAGTCATTAGAACTTGgtcagtttggttttatttgaatGCTTCTATCTGTCAAACATGATACcaaatatttgatatattttaccattaattttaatatattttattatcaaataaaataatatttaatacatatgcattaaaatatgtatgaaaaaatgGTCAT---AATAATGAAGATAGTTATATCATGGCCATTAATTTAATATTACTTTTCATAATTTGATAT-----------TCCTTTAGAACAAATTAAGAAAGCaagcttaaaaaataacaaaag--ggcaATGAACTACCattt-----tcctatttatattttaaatatgctgaGAAAGAAGCCATATTTCTCAAA---CTTTTAAGACACTGTACAGAAATTGTAAAAAGACATCTCAGTTTACCTTTGTTCCTATGATCACCTGCCTATCACCAGGTACAAAGAATGAACACAGTGCATATTCACAACTCATTGTCCGAATACACTGCAGTGTAGACctatgaggaaaaaagaaataaaaaactcttaTGTGAGCGGGACCTGCTTCCACATTGTAAAAGTGAGTGGGACATTCTGACACATCCTTAGTCACAGAGACGGATCGACACAAGAGCAAAATCTTAACATTTCTTAACTAAGATACAGTAACACTGaagcaaaataatataaagcatcaaatcttattttctttgttcagataTCTCCTGATcctaaagaacaaaaa--atatgcaaaagcaaaatagaaa

a score=58560
s chr3           100150802 4792 + 160039680 [encoded data, 5790 characters]
s HiC_scaffold_1 110112580 5250 - 233722169 [encoded data, 5790 characters]

a score=15516
s chr3           100156178 730 + 160039680 AAAGCCATCCAAGGCTAGTGTGTATTAGACCAAAAAAGCAACAACTGTTTCAATGGCTGCCACTACTTCCTCCCAGCCAACCTCAGTGTCTCTCAAGACAGAGCACAG----ATCAGTAAGCAGTAAAAAGAG---CCCAAGAAGGCTGAAGTAGAAACCATCCTTTGCTTTTTCATTCTTCTCTGGAGCCCATGATGCAATACATACCTCAGTTCGGTGGCCAACCATTGTTTTGAAGCAGTGCTGGTTATCCAGGTCCCACCACTTTACCATAGTGTCTTTCCCACTACAAGAAAAACCAGAAAGAGAT----TTTTTACTAGGAAGAATTGCTAACTAACAGGTATGAGAGT--AACTCGTTTGTTGTTTTAGAATA-----------ACGGTAATG---TTGGAAGCTATTCTACCTTACTGTTTATCATAATAAGCAAAGAATTCTAACTCTCCATGTG----------------------GCCGCTCAACCAAGAAG-----------CTTCATTTCTGCACAC-----AACACACAATTTAGTC--ACCTGCCTTCCTCTCACCACTTCACCTTAAAGCACTGCCATTCTGACTGCTAACCAGGAA-CATCTCAGAGCTCTCAGCTGCAGTCATCCACATCCCCAGCTTAGGT--TTTCCATACTG----AAAACGTGCTCTCTGTGGCCTCTACAGCCCAACTCCCC---ATCCACGGCTGTA---AAACCCT------GGACACGTCCTCTGACCTCATTATTCAGAAGCTTCGCATATGGCCTCTTGGCCCATTGCTGGCTCCTCA
s HiC_scaffold_1 110117855 766 - 233722169 AAAACCACCCAAGGCCAATTTTTATTAAA----------------TGCTCTGACAGCCAGTACTACTTTCACCAAATAAGTCATACTGCTTCTCAAAACAGCACATGGTGATGACTATAAGCAGTGAAAACAAAGCCCTGAACAGGCCAGAAAAGAAAGCCATCTTTGCCTTGGCATTTTCTCCCTGGGCCCATGATCCCACATATACCTCAGTTCGGTGGCCAATCATTGTTTTGAAACAGTGCTGGGTATCAAGGTCCCACCACTTCACCATTGTGTCTTTTCCActaaaaggagaaacagagagagataaaaaCTTATTTATGAAGAATCATT-ACTAAGAG----GAAAATCAAACTCTtttgttgctttaaaaaatgatatactGTACAGCAATGACTATGGCTACTATTATATGTGACCTTCCCTCTGA--AAACAAAGCACCCTAACTCTTTTTGTGATTATTCTTATACAGAAAATAAGGTGTTCCACCCACAAGCACAAAAATGCCTTGAATACTGAGTACTAAAGAACACAGAACCTGGTCTATCATGCCCTCTACCCAC---------------CATGGCCACCGTG---TCTAACATGGAACCATCTTAGACTTC----CTGTTTTCTT--ACCTCCCATGTTCAGGTAGTCTCCATGTCGTAACAAGGTCTGCTTTGTAAAGTCTCTAAAGTTTGACTCCTTCTAATCCATGTCAGCACACAAACTTCAATTGAAGTCTCACTACCTGACCT-AT--TTTAATAGCTTTTCATCTGGTCTGTTTGTTCATTATTGGTCTCTCA

a score=13066
s chr3           100157318 358 + 160039680 TTTACCTTGTAACCAGCAGATTCCTTTCTCGGAGAAACAAAGCTTGTGTGACAGCATCCTTGTGTCCCTTTAGACGGTAGAGGCCACTTTCATTGATCACATCCCAAATAATGACATCTGTATCCTTGAGGGACAAAGTAACACACAAGAAAACAAAAATTCTTACCACAAGAGGCTAAATGACAAGAGATGGGGCTCAGTCACCATGAAGGTGCTATACTGCCCAATACAGCTTGGGG-----TTAGACGGC-------------------AGTCC---ACCCTTCATCCAGGAGTACTGAGCAGAGACTTGGTTTTACATTGCTCTAATTACATATGCATGAGATCTCCAG---GCTACTTCTGCATGAGAAAACAGAGCGCTCTA
s HiC_scaffold_1 110120104 368 - 233722169 tttacctagTAACTAGTAGATTCTTTTCTCGTAGAAATAATGCTTGCGTAATGGCATCCTTGTGCCCCTTTAAACGGTAGAGGCCACTTTCATTGATCACATCCCATACAATAACATCTGTATCCTAAAGgaatgaaataatac---agaaaataagtTTCTTTATCACAAAAGACCTAacatcaaacaa--aaatttaattattataaagGCAACACACAGT--------ACTTGTGGAAAATTTAGAAAGCATAAAAACAGTAGAAGCATAGTCCTTAAACCTCCACTCAGCAATAATCAACAGATCCTTTGTTTGACATTGTTCCAGTAATGTAC-------AGCTCCagattgttattttcctattagaAAACAGATCATTATA

a score=32070
s chr3           100159583 1738 + 160039680 AGAACAGAACAGGAAACAAGTAGAACACTCC--CTCATACGCACCCATCCTCCTCACTCTTTCTCCCAAATGTATAGTAGCTTGGACACGGAGAATCCAACCCATCTCATAGCACAGTTTATGAGAATAATCTGCTCCTATATTAAG-----TGTGAGAAACAACCCTGGGCACCTGT--CTGAGGCTCACCTTAGACCCAGAAGCCAGCCTGCCTCCTAGCTGATCGTACTTTAAGCTGGTGACAGCTGCTTTGTGTCCATTGAAGGTTATGTTTCCTTCACCACTGAGGAGGCTGAAGATTCGGATGGCTCCATCCTCATAGCCAACAGCTAGATGCAGCCCATCTGGGGAAGGACACAAGCAAGTGACTTCTTGTTTATTCCCCTGAAGGATAAGGATCTGAAATCATAAAGATGAAAACCAACTCAGAAGCGTGAGGCATGTAA-CAAGACAGCAGCACAGGAATGACCTCAGtacatacacatatcaacacataacacatacacatatcaacacataacacatatcaacatataacacatattacacatatcaacatataacacatacacatatcaacatataacacatacacatatcaacatataacacatagtacacatatcaacatataacacatacacatatcaacatataacacatacacataTCAACAATTTCCAGTCACTGATACACGAGGATAAAACTTGACAAGCAAAGACCATAAGCTCCTCAAGAGGTCATCACGTCCTCTCAAGCTTGGTGCTGGTGTGTATGCAAA--TGATCCAGGCAATGAGCTAAGTTAGCA--ACTTTGTATC-----CCAGTGATTTCTGATACAGAGCTATAAACTCATCCTTGTT--------------------GTAACTCAACCTAC---------AGTACT--AACAGTTTCATCCCAAGAAGAAGCTCTGGGTAGCAACAGGCTTCTATATATTTACATCTATAAATCTATATGTAACTCATCTCACCTCCTGGGAGTCACACAGTAAAGAGGGATAATTTATCTCTTTGTGCTTAGCAAGAAAGGAATAGCTTCTGT------------CACAGTCAAAGCAGAGTGAAGCAACCAATGAATCTCATCAGTTATGGT-----------TAAGAGAAGGACTGCA-CAACACAGCAGAATGACAGTC--CTTTGAAATTCTACTGCTTTACAGCTGGCTGTGAGAACAAGCAGAACATGAAAAGCAGAACCGGTCGACAAAAGTAGAAGTTAATAATGGCTAAGAATAATAACCCATGAAAACGAACACACCCATTTAAGCAAACTCCTGCTTGGCTGTGACTTTCAGA--------------ACACAACAGAATCTGGTGCT-AGCCGTCTAGAAAAATAAAAGGGAAGTGATCTCTTGGGGGACTCACACACAAATGAGTGCAGGC--------AGGTCAGTCA----AGGCTCTCCCACTTCACCCTTCCAAGAGTCGGTGTCATTTAACGGTGTCCATTTCTTATTTCTGACTTACCTTCTCGCCTTTCCTTAAGTCCCAGATAAAAACGTGTTCACAGGCGGGTACTGCCACATAGCGTCCTTTCTCACCACGGAGTGTCACAAAAACAATGTTACCTTTTTGGCTGCCAATCAAGCCAAAGACAGCACTAGCCACATAGCGCAGATACTGTTTAGTAAGCCCCATGCTGGGCTGTCTGATGACACCGGGAAGGCAATCTG----TGTAAATAAACAAAATTCAGTTTTTGCAATACAATGACTCTGCACAGCTAACAAACAGGAACCTTTTTTTTTTACATGATCAAAAGCATGTAACTT
s HiC_scaffold_1 110121333 1557 - 233722169 aaaaaatgagaggaaataaaataaaccccTCAGTTTACACCCACCTACCTTGTATTATTCTTTTACCACCAACATACTGTTTTGAACACTGAGGTCCC--TTAGTTTCACCCAATAATTTCTGTGAACAACCTACTTCAGCCTGAAGGCTCCTTACATATCAAAGTCTGAACACCTGTGTCAAAGTCTCACCTTGGAGCCAGAAGCCAGTCTTCCCCCCAGCTGATCATACTTCAAGGTAGTAATAGCAGCTTTGTGGCCATTAAAGGTCACATTTCCTTCCCCACTCAACAGACTAAAGATTCGGACAGACCCATCCTCATAACCAACAGCTAAGTGCAGTCCATCTGGAGAGGGGCACAGGTAAGTGACTTCTTGTTTAAGACCTTGAAGAATAAGGATCTGaaatcaaaagaatcaaaaacaatGTGGGGAAGTTAATCATGTAACCAAGAGAAAAGTGTAGGAAT--CATCAGGA-------ATGGTAA--------ACTTGAGAGTATCAATA---------------------------ATTCCAAAT------------------CACTCTTCTGAATAAGGC-----------------TATGACActtatgatccattttgagtt-----------------------------ctTTCATATATGAATCATTATCTG-------TATGAGATAATGAAA--TATCAAGAAAATGGCATAA--------------------------------------------TACATGCAAAACTTACCCAGGCAAGAAAATAAACTACTAACACTTTATGTCTACATCAAATGATTTTCAAGTAAGAGTCATAAACCCATCCTTATTTAGCTAGGTTCCATTTTATGAGAAATCAATTTGCACAGCAAGGAGTACTACAGTGGTTTTATTACC--AAGCCACTCTGCGTGGCAACAA-------------------TATAAA--------------ATATCA--------GAGTCACGTAGTTAATGGACAAGATTAAAATCCCTAT--TTGGC-AGAAGTGATTGGCTTAAGGATCTCAGAATCACACAGTCAAAAAGTAGCTTAA-AACTCTTGTCCCTCATCtgtgttaataaaaaaaaaaaaaaaaaaaggattccaTTGACATAGCAGGGTAATTCTCTATTTTAAATGCCTAATATTTTATATCTAGCTTTTGCCA----------GTAAAAATGATAACTGATTGGT-AAAGTA---------aattgatataaaaaataa-----------------------------------------agttgtggATTTCAGGAATTTGGtggaaataaagaacagaaattgatGCTAAGTTATCTAG---AGCCAAAGAAAAGACGTCTAAGGATACATTCACACAAAATTTAATGCATGATAAATTGGAGCTCATTcatttctgtctctccatctTTAAACACTCATAAATCAGTATc----agctttgttgat------ttttttactcACCTTCTCTCCTTTTCGTAAATCCCAGatgaaaacatgttcacaggCTGGTACTGCCACATAACGTCCTTTCTCACCACGAAGGGTCACAAAGACAATATTGCCTTTTTGGCTGCCAATCAGGCCAAAGACTGCACTAGCAACATAGCGTAGGTACTGTTTGGTGAGCCCCATGTTATGACGTTTGATACCACAGGGGAGGCAATCTGTacctataaacaaagaaaatttagttCTTTGAATACACTGA-TCTGCCAGGTTAGTGAACACCAA---TTGTTGATCATGTAATTAGAAGTATAGAGCCT

a score=18053
s chr3           100162328  899 + 160039680 GCCAGCAACACTCACCTCACTCTCCACGAGGCTCCAGCAGACAGCGCTGCCTACGAGACCCGCCACTTCCGGTCCGATTG--GAAGTTTCTTCCGCCCGGCGTTTCCCTTACCTTCTAGGCGGAAGTGACGGCAGAGC---GCTGTGATTGGGTGGCG-TGGCGGAGA--GGAAGCGGGTACCTTCGCTGTCAGATCG------CTGTCGCCAGTCACCCTGGCCTCTGGAGACCGGTTCGCTTCAGCCTC--CGCCTCTGGCAAGCAAAGTGTACGGATGTCATCCGCCTGAATTCTGCCACGGATCTGAGTGAGCTGCGGGCCGCCGCCCGGATGGGCCCGCCCGAGCGCTGTGAGAGAAGGG--------------CGAAGCCGGGAAGGGAGGG--CGACACAGTCGGGTGCGGC----GGCT----------------GGGAGGGATTGGGCTGGCGG-----------------------------------------GTCCTCCCGGGCTTTG---GGCTTCGCACTCAGGGTAGGTTGGGT---------------------CGCCAAGCTCTGGGGACGCAGGTCCCCGGGATTTGCTG----GGACGCGGTGCTGCGAGC------------------------------AGCCCTGCGGGTGGCGGCTCTA--GCAGAGTCCA-----GCCCGTCCTATAAATCGGG--TTCCCTG------------------------TGGTCAGACGCTGAGCCCAGGATGCTGAGTTGTAAAAAGACCCCGCAGTCCCTGGAGTGACATTGACCTGGCTTTGTGTTTCCGCTTTCAGGTCACTTGAGAGGGAAGTGACCCTGGGCTTACTGGTCCTTAATTGTAGACTGAGACTGA-GCCACTCTGTTAACGAGGAAATTAGCTTTTCTTCTCTTGCCCCCTTTTATCCTTGGGCTGGTCTAGAAGTTTTAGAAACGAGGTCTGATGTCTGTAGCTGTCTA----TATAACTGTACGTATAA-CTATACAAAAGAATTGATCCCTGCCATGGTTTACTGA-----ACCTCTGTAGCCAACCTAGAAATT
s HiC_scaffold_1 110125499 1070 - 233722169 GCCTGCAGGACTCACCTAGC-CTCCACGAGGTTCCCGCCGAGTGGACCAGCCCCTGCGGCCGCTCCTTCCGGGTCGGTTCCCAGAGCCTCTTCCGCCCGACGTTGCCTTTGCCTTCCAGGAGGAAGTGACGAAAGCTCCGAGCTTTGATTGGGTAGCGGCGGCCGGGACCGGAAGCCCGTGCTT-----GGCAGCTCGGAGCTCTTACAGCTGGTCACGCCAGCCTCCAGGGACTGCCTGTTCCTAACCTCTGCGCTCCTGGGTAGCGTTGTCTGGATTTGTCTCTTGGCCGCCTTCTACC-CGGAGTTTTACCCGCTGTA--CTGCCGCCCGGATGAGACCGCCGGAGTGCTGTGAGAGGCGGGATTGGGAGGGGAACCGGGGCCGGGGGTGGGGGGAATGGCACGG--GGGTGCGGCCAGTGGCTCACGGGACCCGGCCTGGGAAGGGAGAGCGCTGGGAGAGTTAGCTTTGTCACTCCTCTGGAAGGATGAGTCTGCCGCTGCTCTCTCAGCTCTTAACTGGGTTTTCACCCGAGGT--GCTGTGTGCATGCAGTCTCTATGAGAAGAGCGAGGCTAAACGGACCCAGGCGCGGGGACTGTGTTACCATAGCCAGGGCGGTGCGTGTCCTGGGGCGCCCTCGAAATTGGGCGGCCCGGACCCTGCCGGCTGCAACTCCGAGGCGGAGCCCCTTGCTACCGACCATGTGTACTGGGCATTTCGTGCACCTAGGGCAGCTCGGGTAGAAGTGGGTAGGTGCTGAGCCCAGGATGCTGGGTTGTCTGG-GTCCCTGCAGTCCCTGGAGTGACATTGGTTTGGCTTTGTGTTTCTGCTCTCAGGCGAATAAAGAGGGAAGTGACC--GGGCTGACTG-----CGTTTGCTGATTGAATCTTAGGTTGTTCTGTT-GCTAGATGGGAAGTCTTGCAattcttccttcattttattcTTGGGCTgcac-agaagttttaaaaatgagttttggTGTCTATAGCTGTGCAAAATTACAGCTG-GCATATAAGCTATATAaaaaagtgaactgcagccatctCTTACTGAACAAGACATTTGCAGCCAGCTTGGAAATT

a score=45885
s chr3           100168053 3195 + 160039680 TTCCTTCTGTTGGCCTTCcactgctgtctttgctgagcttccttcctggcttagccgcctc-------ctcacctacgctcttgtctt------agtgtgcat-tttgctgtaggactcagccctaggatctctttctcactgtttgcacttgtcccgcagacagtcttgtctagttcccgtagttttcaacactgc--acttgctgagacttctagatctat-------gctgaacctctgctctgagctctagcctcaagcatccatttgttagtttgacagtaaactcagggctatgtaataaacattttgaactcagcacattcaaaaGGACAGACATATGGAATGGGAACC-CTTGCTTTTCCTTC-ACCCTACAGCTTACTCCAATACCTCTTCTCTATAAGTAGCATCACTAGCCAACTCAGTTGCTCAAGGGAAGTAATCTAGGCATTGTCTC----------ACTTGTGTGGATCCTCTGTATTCCTATGACAAATTCT-TTGGATTTATCTGTCAGTTATAGTCCCAGATGTGACATTTCTCGTGGCCACCCATCTCTCCTATGATCATCTTGTATCTTCTACTGCAACTCTTACCCTT--------CTTGCTTTCCCTAACTAGAGTCTTCGTTTCAAGCAGTGTATT----TGGCTTCC--TCATATTTAGAGGAAGAGCTGAGGATTTTAGCATGGTTTTACAACTGCATCATCTG-------------GCCTCGCTCAGCACCAAC--CTTATG---------ATCTAAATCATTACCTAGATGGCTTCCTGGCTCCCCCTGGACTGCAGCTCAC---------CTTCCATGTCCCTTGG---TCTTTGCCCTGGCTGCTTCCCTGCTCT--------------------------CTTGTTTTCCC-----TGCTTGCTCCTCACAAGTCACTTGTTCTCTGGAACGCGCTCTCATTACA----------CTGTTA------TCATCACCTTTCT------TCTCTGCA---GATACATGAGCTCCCAAAGGTAGACATGCCCT-GCTCCCAGAGTCCCCAGGACTTGGAATAGTACCTAACTCACACTTAGTGCGAACAAATGTTAAGAGGATAAATGAGGCTGCAGTTTACTGCAGGAAACAGCTGTGGGAGTCAGGGGTAAGTTGAGTATCCTTTGCTCTGGTGGAGTTGTCCGTAGCCTAGGTCCAGCTCTAGAAACTCACACCTTCCTCTTCCA--------------GCGTTTGTACAACCAGCTGTCTACCACA-AGCAGTCTCATATACCATATCCTGTGTATTGTCAGATCCTGTTCATTGTTCCTCTGCATGTTGCCTCTTT--TTAAAGAAGATTTTACTTTATTTGTAATGTATTTACAATTACATATATATGTGCACGTCAgagttataagtggttgcgagcctcccaccatgagcggtaagaaccagatctgatcctcggcaagaatagtgtgtattcataacttctgggccgtttctctagccccCATATGTTGCCTCTTAAATCCAAGCCTCATCATCTTTGATTGTTAGTTGAAACCTTTATTATCTCTTACTATTTAAGCGTAGTGACCCCTGTCTCAGTCTAACATATCCACATTAT---TATCAAATGGAATTATTTAAGTTATACATGTTATTTTTCATTTTTTACCTCATAGCATAGTGTCTAGTATTTTATTTATTTCTTTTTGCAGTAGTGGAGGCTGAAAGGGTTGAGTGAGTGGGCCTTTCTGAAGA--TGGAGCTGTTGTGATTTGTGATGATTCTGATCACAGAAAGATGCAGTTCCTTTAAAGGAATTTATGCTTGCATAAT-------------TTTTAAGATGTTTTTGGTA--TCTTGGATGT-----------AATAGGTCATTACAATGACTGTGGACACACAGTGTACTCTTGGCTCACTCTGTTCCACAGCAGAGTCTGGTGCGTTGGTGTGGTAGAATTAAAGTGGTATTGTGCTCAGTGCTTGTGGTTTCGTTTGAAAATGATCCCTTTTCTCTTTTAAGCTCAAATCTCCAGGGATTGTTGAATTGCCAAAGAGTTTGGTTCACGAG---CTGAAGCTCCCATTCCATGGATCCCTTGGGTGCACCTTCCCAGTTTGTGGATGTGGATACCCTGCTAAGCTGGGGCGACTCGTACGAAGATGAAGTAGACTGCGCTGACAGTACTGCCGAGGCCTTCCAGGAAGACGCCAGCAGATCACCTTTTGTTTATAGTCGGGACGTCAATGGAAAAGTGGTTCTTTGGTAACGTTTTCATTATACTTTACTGCGC-CTGAC---TTCTCATACTTTTCCTCTAAAGTTCTTTTTTACTGAACTAAAACATTATTGAAATATTGAttttatg-----atacagtcttattgagatataattagcatgcagtatgctgttcagatttaaaatgcatagc---ttaaatgtt----------------------gctgtcc------tcttggtgtgtgcatccatgaagccctctccacagtta------------aga---------------------------------------------------------cagtgac-----attcccttcatcttcagaaccactc-------ttgttggtttgcctgttttggacatttcatatatat-gaaatccctacagtaAATAATGTTGAGACTTTTGGAC------TAAT-GTTTTCATGTAGTACACCGTAGTAC----TTTTCTTTTATGACT-----TAGTGTGTATACACTAAGAACACACTTATCAGCTCCT-GGTTGATGGGCAGTCAGGTTGTTTATATTCTTTTGACTATTAAGACTGATACTAATTCCACACTGTAATAATCAACCACCCTGAACTGTGTAAGCCTTCTGTTAT----GATTAAATACGGCAAGGTGCAAATGTGCACCATGAACGGGTCTGCAAGTTCTG---------CAGTTACTGTAAAAC----CTAAGATGGCAGATTAATTTTTT----------TTCCATTTCTACTT---TTCTGCTATTGTGAAGCCGATATT---------GCAGAGATGGAAGGTTTTGGAGAAACTAG--GTCAGTTATC-TCCCTCATCTGTCTCACAATTGTTGTTTATCTGTTGGTCTGTCAGGAAAGGAGATGTGGCATTACTGAACTGCACAGCCATTGTGAATACCAGCAATGAAAGCCTCACAGATAAGAACCCTGTGTCAGAGAGCATCTTCATGCTTGCGGGGCCAGATTTGAAGGAGGACCTTCAGAAACTCAAAGGTGAGTGAATGCTCTTAGGCCTGGTACTGCTTAGGGAAGACGTGGATGTTGTCTTCCACT-----GAAGAAGTGTATTGGGTGTTCATGA---AGAAAACTATGTAA----AGCTGATTTTTCTGTTGGTGAAACT------------TTTGTAACCCCCACAGTGCG-TAAAATC----CCCTAAGATTTTACTAGTCACCCAACTTACCAGTCTTGTGC---TGGATTTTAAAATGATAGT
s HiC_scaffold_1 110132314 3250 - 233722169 TTCCTTCACTTGGCCTTAGGCTACCATACCTTCCAGATtttctttccatctaaccagttTTTCTGTATCTTACCTTCTGGCTTGTTTTTCTTCCAGCCTCTAAATTTGCTG-AAGATTCATTCCTTGGAGCTTTTTCTC--CATTTGAATTTACTCTCTAG-TGATCTTGCACAATTCCTAGAGCTTTGAATATTATCTATATGTTGAGACTTTCAGGTTTGTATCTGTAGTTCAACCTCTTCTCTGAGTTCTAGCCTTA----------------------------------------TAACAATTATCTCAAACACAGCATGTCCAAAA----ATACATAAGGGGCAAAAATTTCTTGATTATCCTTCTACTCCACAAGGTCTTCC------TTTCTTCTGTAAATAACGCTGCT-TCCTACATTATTACTCTAGG-AATTAATCTAGGAATCATCTTTGATTCTGCTCTTTTCCTTCACCGTCTACATTTATTTAGCAAGTCGTGTTTGCCCTGCCTTGAAATTAC-TTTCTAAACGTAATGTTCCTCAT---CCTCCTTCTGTTCT-tgcccctattttattttattttattgtgtatagTTTTGAATATGACTTGTATTT---------AGTTACTGTCTTGACCAGGATGCTCTAGTAGCTTCCATTTGTCTTTACAGTAAggtctaaatttcttacagagcTTATACA-CTATGTCATCAGCCATGTCCCTCTTGCCAAGCTCACCACCCGCTGCTCATTCCCTCGTATATTTCAATC--CGCCAAATTGACCTCTTGCCTCTACCTGGAATACAGCACACTGCTTTTTACCTTTTTGCTCTTTTGCACTTTTTGCACTTATTATGTCTTCAACCCAAAACACCCCCAAGAACTTCATGTGCCTTGTTTTCTCACTTTTGCTCTCTGTTCAGGTGTCagcttttctc----atatttttttgttacTGCCAGCAGTTCTGTTAGGGGCCTCCTTGCCTCTTTGTCATCTCTTTGCCATTGAAATATAAGGTCTGCGAGGCAGACTTTTTCTTACTAATAAAGCCCCCATG-CCTGGAACAATACTTAATGTGTG--TGATGCTTATAAGGACTTACTGGATGAATGGATCT--ATTTTAC----AGAACTAGTTGTGTGACTTATTGGCAAATTGAAAAATCTTTA-TGTGGTGAAATGTCCCATAACTTAACTCTAGGACTTGCCACTC-TGTCTTCCTGTCTCATCCGACCTAGTTATACTTCTGTACATGCAATCACCTACCATATCACTGTGTTATA-GCTATGTCCTGTACACTGCCAGATTCTGCTCATTGCTCCTTTGTGTGTTGCCTTTTACATCCATGGTTCCTCTACCTTACCTGTTACTTAGTT------------------------------------------------------------------GAACCA-------------------------TTTATT-ACTACCACTGG------CTTATAGTCACCAGCTG--GCTTCTCA---------------------------TAGTT------TTCACTTTGTCTTACT------------------------CAGTACAT--TCTCCACATTACAGCTATCAAGCTGAGCTCTTTAAATTATAcatgtt-ttttgcattttt--------------------------------atttctt---------gccGAACCTGGACA--CTCAGTGAATG-----TTCCAGAGAAGTACAACTGGTGGGCTGTGTGATTATTTTAAT--------ACTGTGATTCTTTGAAGAGAATTTATACTTAAACAATCCCTTTATTCCTGTTTTAGAAAAGCTCTAGGAGTTCTTTGTTGTCCGTTATTGTTAATGGACTATTTAAATGACTATAATCATAAAGTGCACTAATGAAGCA-----TTTCACGGTagagt-tgttttgttgtt-tagcAGAATTGAGGTAACGTCTT------TGCTT-----CTCTATTAAaacagttctttcttttcttttaagctaAACTCTCAAGGGATTATTGAATTGCTGAGAAACTGGGAAAAAGAGAAGCTGAAACTCTCATTCCATGGATCCCTTGGGTGCACCTTCCCAGTTTGTGGATGTGGATACTCTACTAAACTGGGGTGACTCATGTGAAGATGAATTAAATTCTTCTGATACTACAGCTGAAACATTTCAGGAAGATAATATTAGATCACCTTTTCTTTATAATAAGGTTATCAATGGAAAAGTGGTTCTTTGGTAAATTTTTGATAATATATCATCATCCAATAAcattttctcataattttctgt--aaattctttttttgtaaagCCTATTgttgtttaaatattta---catgtacatatacacatttatGGAGATACAGTTAATATATAATAAGCTGTACATAGTTAAAGTATACAATTTGTTAAGTTCTAACATATATCTACATATAGAAAGCTATCACAAGTGTGATAGTGAATATATCCAT----TCCTTTCCAAAGTTATTTGTGGCTTTTGGATTCTTTCCCTCATGTCCTTCCCTGTGTTTCCATATCCCCAAACTACCAATGAGTTTTCAGTCACTAtagattagttttatttttcagtctacTCTCTAGCTTTGTAAATTTCCC--TTTTGGACATTTCATGTAAGTGGAAATCAATACAATAACATATATGAAGTTTTTGTGACTTAACATAATGGTTTGAATATAGTATGTGTAAgtacctcatttctttttatggctgataATATTCCTTGTATAGATATACCATGTTTATTTGTTCATCAGTTCATGGAAATTGATGTTCTTTCTACT-TTTTGTGTCATAAGAC-ACTGCTATTTCTAAATTCTTTAACATAACCACTTTTAACTTTGTAAGCATTCTGTTAGAACAGAAGAAATA-GGTAATAAGCAAATGTGTGacat-aatgtttttattagtttCGGAGGAGTAACAGTTGCATTAAAGCTGTATTAAATAGGCCAGTTAAACTTATAGATCAGGAATTTCTTTTATAGTTAGCTTATGAGCAAGCAAAATCAACCTTATAAATGAGGCAAAGTTAGAATGTTTTGAAAGAATTAGAAGTTAGGTGTTGTATCTCTTCTTCCTCACACTCTCT---------TTGCTTACTCAGGAAAGGTGATGTGGCATTATTGAACTGTACAGCCATTGTGAATACCAGCAATGAAAGCCTCACAGATAAGAACCCTGTGTCAGAAAGTATCTTCATGCTTGCAGGACCGGATTTGAAGGAGGACCTACAGAAGCTGAAAGGTAAGTCAATTTACTTAGGTATGTCATTCCCTAgaaatcatttgt-ttttatcttcctCTACCTCAGAGAAGCAAGTT--TTGTTTATAAGTgagaaaattatgtaaatatagctg-tttttcttttgttagaaCTCAATCAAATAGCTTTTGAAAGACCACAAGGTGTTAAAAGCAGAGCTTTGAAGTTTTACT-GCCAAGTAAAACTCCTCTCTTgtgcttttgaattttaaaatgacaat

a score=34699
s chr3           100177138 1440 + 160039680 GGGAATAATCTTCCATTCTGTTACATCATCAGCAATAAAGAAAATGTAACCTTGTCATGCTGGTGTGAGGAGGGTTGCTGTGGCTTTCATTGACTGTGTATA----------CCTGA--GCCATCTCTTTATAGTCCCACATTACAGCATGGTCTGGCAAGCAATTAGGAGTC---TTTCTAGTGTTCCCCAGAAATAACAATTACAATAGCTACTGCTGTTTGTGTGCACTTTGCATAATTTAACTCATTTGATTTTGTAAGGCCATTA---------------TCTCTCTTAAGTACAAAATCAAAGCAC--TGAGGCCATGAACATACCCAGAAT--CCACACATGAACACTTTGGACTCTGGCTTTAAA-TGAAGCAATTTGTTTTAAGTCTGATTCTGCCCTTCCTTGCAAA-------GCTTCATACTGCCTACTCCATTTTGCAGGCTGCTAGCTTTCTCTCCTTTGCTAAGCCAGTTACCCATAGACCACTGACTTTTCTCCCTTCCAAAACCTG-GATAATTCTCTGCTCTGTGTCTTCCCCATCCTGTAATATAAGATTGTGCTTATACCT--------GCTGTCCTTCTCAGCGCTACAAGAACAGAAGGGACAGGCATGGATGCCTGTATTCAG-TCCTACTTTTAGATAACATTCCTCACATTTCTAAATGCACTGTTT--TATGCTTTGCATATTTGTGGTT-TTGTAATATTTACAGGCTTT-TATGTGTCCCCGTTGTTTCTAGGTTGCCGAACTGGTGAAGCAAAATTGACGAAAGGCTTTAACCTAGCTGCTCGGTTCATCATTCACACAGTGGGACCTAAGTACAAGAGCCGCTACCGCACTGCAGCGGAGAGTTCCCTGTACAGCTGTTACAGAAACGTGCTTCAGCTGGCAAAGTACGGCCTGTTC----------CCCACATGCTG----------------------TTAGAGATG---CCTCACTGTAGAAAGCAAACTCTGAAGGGCTTGA-----------------------------------------------------------------------------------------------------------------------------AAGGATCTCTCA--GAGTATGGTTAGATTTTACATTCATGTAACTGTCAAATAAT-------------------ATAGTACATTTATTG--GTGGGGAAGGAGAGATGCACACTTGCGTTTTAAGAGTACTTAGGGATTGTGTATGCAGAGAATTGTTTTAATACAACTTCTGGGTTTTCTGTCTGATTGCAGAGAACAGTCCATGTCTTCTGTTGGCTTCTGTGTCATCAATTCTGCCAAGCGAGGTTATCCACTAGAAGATGCAACACACATCGCTCTTCGTAAGTAACGATGGGAGTGCTACACAT-------TCATCAAGTCCTTAACG-----TCTTCCACTGCTAGATAA-AGTTCTAACCAGAGAG----------------CACCATGGCGTT---CTGGGAGACTTTGCATTGCTAGATGACAGAGTTCTCAATTAGTAT----GGTGTAATATCTGTGTATTACAGCATACCTATGCATAACGGCTTACAGGACTTGCTCACTAAGTTTGAAAATAATACCAGACTAGAAAATATTT-------------TTTTTGAATTTAAAATCAGTATATTCT
s HiC_scaffold_1 110136355 1678 - 233722169 GAGAATAAACTCTTTCCTTAATATAT----GGTGGTAAAGAAATGATCCCCTTTTTGTGGTGACTAGGGGGAAACTTGTGTG--TTTGACTGATTTCATATAAACTTTTTAACCTAGCTTCCCTTTATTTTTAGTCTCATATTATAGCATAGCTGTGAAAGTACTAAGAACTTCCGTTTTCTGAGCCTCTGtaatataataataacaatagtagCTAATGCATGTGT--ACTTTACATGTATTGACTCCTTTAGTCCAGTGAAGTAAGTACTACTAAATAGGAAATTTCCtctaaataggaaatcaaaacatGATGAACCCAAGCACGTGCCCCAGGTGATAGAACAGAAACACAGAGAACTGAGGATTTGAACTGAAGCAGTCTGTCTTGAATCTGAGACTGCCTTTCCGTACAGATCACCTCGCTTTATATTGCTTACCTGCTTGTTTATGCAGTCAGATTTCTCTACTCTGTTAAGTCACTTATTCCTCATCCACTGACTTTG-TGCCTTCCAAAACTGGTGATTCTTTTCTGCTTCAtgtctctctcattttct---------ttgtgtttatacCTATGGCAttgctattttctt----attttgagaacaCAAAGAACAGAGATAAATTCTTGTGTTCAACTGGTATTTTTAACTGAAACTTGTTAAAGTTGTTAACACTTTCTCTGGTATGTGTCGTGATTTGATGTTTATCCTAGTACCTGCAACCTTAATGTATGTTTCTGTTGTTCC-AGGTTGCCGAACAGGTGAAGCAAAATTGACAAAAGGATTTAATCTAGCTGCTCGGTTCATCATTCACACAGTGGGGCCAAAGTATAAGAGCCGCTACCGCACAGCAGCTGAGAGTTCCCTGTACAGCTGCTACAGAAATGTACTTCAGCTAGCAAAGTATGGTGTACTCATTTCCTGGACTAGCATGCCAAACATTGTTAAAGGCCAAGGATTTAAAGATGAAACCTAGCTTTGGAAGTCAGATTTTCAGGGACTTAAATGATTTAAGTGGACCCTGAAATtagaattaattatattttcaaacttaACAGTATAAATGGTGACTTGAGACAATTAGGTGACTTGAGAAAGTAATCTATGCACATTTCTTTCAGTCTTGAAATAAATATCCCTTAGTGAGCATAATTAAATTATGTGTTCATATGGTTATTAAACAGTACATTTGGCTTATCTCTTAATGGTAAACTTTTTGAAGTAAGGAAGGAG------ACGTTgtcatttgaaaattaatta---------tatactataaatgtttgtggtataatttttgtgtcttct-tttgattGCAGAGAACAGTCAATGTCTTCTGTTGGGTTTTGTGTTATCAATTCTGCAAAACGAGGTTATCCCCTAGAGGATGCAACACACATAGCACTTCGTAAGTTATGCTGGAGATGTGGTACATATTTGAATCTtgaaattttgaaagcagttctTTTTATTACTAAATAATAGTCATAGCCAAAGAAGATTTTTTGACTAAATGACCATGAGGTGATACTGAGA-AGTGTCTATTGACAGGTTCTGGAGctctcagtttattttttcaggttaagattttt----------atccatttaaataATGGCCTAGGCAGCCTACTTATTAAATGTGAAAATGACACCATACTAGAGAATATGTCCACTCTACTGGATAGTTGAATCAGAAGTCAAAATAGTCT

a score=29366
s chr3           100180211 3167 + 160039680 TTTGACAAT------AATGAATGGCTTGCACACATTTACAGTGCATGCTTGCTAAAAGTGAACCCATTGACATATGTCTTTCATTAATAAGCAAGAGCTTTCTTGCTTATTAAACTATTAGCAAAACAT------TTTTATACAAAAACCCAGTGGTTTCATGTTCAGTGTACCAAGACTTTATAGTATCTTTTTTTCC------CCAGTTCATATACAGGTAAAACC---ATAAACATCAGCAGTGAAGTAAAATTACTGGGTTACTTATTCA---AAAAGAATTATGAGTTACTGGTC-TGCTGTATTCTGTCCTATCCAGGAGCAGCCAGCAGTGA-----GGCAAGAAGTCCATGGTGCTAGTTCTGATTGTCCACACTTAAGCCTTGAAGGTGTCAATATCCTGGATGTCACTTTCACTAGTTAAAGCGTCTTCAT-AAAGATAAAGCATGTGACATCCTGTTTGGCTGCCAGGCAGAGGACCCAGCTGCAACT-AGAAGGAGCAGTGTAGAC------CGGAATGCCGAAATCCTTGAGTCATGAG---GTCAATCTCATTCCTCTTCCTGGCAGAAGTCTCCTTCTAAATGAGCACCATTGAGAGACTTTGATTGGATTTCTACTTGGCATTAC-------CTTCCATAGGAAACATACAGTAATTACTGTTAAGGGGCAGTTACATAAGAATGTCAAAATTTTACATAA-TGAAACTAGTATAAGAGAAAATTTATTTTAGGATGCTGTTTTAAGGAAAAG------------CAGACCAGGAGAAAAACAGATTTGCTCCTAGAGCAGCAGAGTTGCAGATCTT-CATCCTGCTCTCAACAAATGAGTCTCCTGCACTAGATCCTTGGACTACATTACTTACCAAGGCAGCC----------------CATAAAGTATTAATTTAGTCATTGTTTGTTTTTGA-TGAGTGCATGTCATATGGCCA---TGTTCTGATAGACTTAAGTTAATATAATGTTAACATAAAATATACTTGGCTTGAAATAGGCCCACATTGTAG----CTGCAAGAAGTTTACAGGCAGAAGGATGCTCAAAAGCACAcagaggcttcccatttaccataggattgcatctcattaaacctattgtaaacttgaaaggccctaaatcgaaCGAGAACCAAGGTGGGTGCAGGAGATTC---TGTATAGA-GGAACAGGAAGGGTTGGGTGGGGTAGAGTTCTACACAAA-----------CATAGCTTATCAC-----CTTGAAAAGTGAG----------------------------TGAAGATTCACAA----AAGAATGGAGT-----------------GGAGGAACCATGTTTTCTGGT----------CAGAACTAACCTACCTCTGGATAGGGCACCATGAAATATAAGTGATGGTAGA-AGACGTGGGAAGAACAGTTGGAAACAGGACTTATGAGATGGTTAGCGAGG-----ACAATGCAGCA------AGTCACGTAGGAGCTTAACTTATAAGGAGTACAGCCCCATTACAAGTATCTCCCACCGAAGGGACTGTAAGAAGATTACCCAGGAAGCAAAAGTTGCA--GCTTTGGAAATGAAAGAAACAGAGACCAGCTAATAAGTTAATGCCAAAATGTGTGTGAGCATTAAGAGCT----TGAAa---------------gccgggcatggtggcacacacctttaatccc--------agcacttg-----------ggaggcagagccaggcggatttctgagttcgag-------gccagcctggtctacagagtgagttccaagacagcc--agggctacacagagaaaccctgtctcgaaaaaccaaaaAAAGAAAAAAGAAAAAAAAAAAGCTT------GAAAGCAACTGAAAGAGGAAGGATGGATATTTGACATGCT----AGCAGAATTAAAAGATTGTGCATGGAAACCACGTGACAGTGTGGATTGAGATAAAAAATAAAGAGAATGACAAAGGAAATTcagagccagtaaggtggctcagcaagtaaagatgcttgctg-----ccaggtctgatagcctga---gctcagccctggaaccctatggcacaaggacagaactaactcctgcaagtt--gtcctgagctatgcacatgt-accatggtgcacacacaccatggtgcacacacacCATGGTGCACACATGCATAAGGATGGGATAGAG-TAAGAATAAGATAGCTTTGGTTTTGTAGGCAGGAAACAGGCTGAGTGGGACACCTCACACTGTAGCTGAATGGATACAAAGGCA-TTGTGCTTTTCATCTGTGCTAGATCTTTCTGGCCAAAG--GGAAGCC-------TCAGAGAAATACAGAACTGGATAAAAGAAAGAGGTCTGGACTCAGCATCTTCTGTAGCCAGCCACTGTCACAGACACTGTAACTAGGGCAGCAAGTACAATAAAGCCATGACACCTTAGGGCC------------ACTGGAGGACTGA--GCAGAAAGGATATGCCCTAA--AGGGACCTCCGAAAGCTGTCTGCTAT-GTTGCTCTGACGGGAAGCA--TCCCGGGC-------TGTGAGAGAGGCGTGTGGCTGGCTTTTCTAGCGGTGGGTAATTGAGCAGAGCCTGATGAAGGGTAGCCCATTACAGAAATCA--AAGCTTGG---CTTTAACATTGAATA-TCTTTCCATTCTCTTCTTTAGGTACTGTGAGGCGGTTCCTAGAGATCCATGGGGAAAACATTGAAAAAGTAGTATTTGCTGTCTCAGAACTCGAAGAGGTATTTTACTAATATTTTTTGCTTAGTTTGAGTCTTAATTCTACTTGTGTTACCTTCATGTGATCATCATCTGTTCACTGAATCTGAAGTAGATAAAT-GTAATGATTTAAATAAACTTGTGGCAGTGGGATTATGC-TCATTCGTGAAAGAAGAGATATAATGGAAACTAAAGCAGTGTAGAAGGAACCAAGATTGTCCAGTGTAAACCACGCTGTACTGGTTGCCAAGTCCATCTGCTTCAAGTTTTGGAATCACAGGCATGCACTACCCAGCTAAAAAGGAGAGTTTAACTCAGTTTTCCTGCTGGGCTGCTGTCTTCCTAAGGGAAA---TGGCACAGGTCAGCAGTTCTGC-CTGCTGCCTGCACTAGCACCCAGGCTGTCGCCTTGTAACCTGAGTACTAGGTAGGATTCTAGGGTTTAGGAACATGGCTAGAAAATCACTGCTTTGCCGACGAGGCCTTGCTGTCTGTTTGACTGG------GTGAGGGAGTAGCCAAGCTGATGGGGACAGGTTTATGTGTTTTCTTATGAGTGGTG-----------AGTTTATTTAAACTTGGGCCATGTAGGAAGTCAGACCTTAGTTTCTGTCTCCCTGGGCATCCTTAGCTTGAGAGTACTGTGTCGTGCTCAGC
s HiC_scaffold_1 110140908 3145 - 233722169 TTTGACCATttagaaaacaaatgtcttgtACACTTTT---GTGTATA-------------AATCCA---ATATAAATCTTTCat-----accaaaagctttttt-cttATC---CTGTTGACAAAATCTGTTGTATTTCATTTGAAACCTGAGTAACATTAT-----------CAAGACTTTTTAGTCTTTCTTAGTTCATGTGTTCAGTTCTTCTCCATAAAATGCCTAAAGAAACATCCAcattgaaagaaatttaacagacCATTCATTCACTCAATAAAAATTTACTCAAGTGGTTAGGCTCAATGCT----TATAAAGGA------AGTTGTGATGATAAGAAAAAGGgtgaaaatgtttgcttttacTGT----GTTTCTGTTCT--AGAAACTAACATCCCATGTGTCATTCTCACCAGTTAAAAGGTATTCATTAAATTTTAAGCACATGATGTTCTGACTGGTTGTGAAGACTTGTGCACATATGAAACTTCAAAGGAATCATGTGAACTTAGCACTTAGCACTGAA----------CATGAGAATGATGACCTGTTTCCCCTTTTATGCcgaattacttttctaaataagcTGTATTGGTGGAAATCAGTTTGGTTACTATTTGGCATTGTACTTTGTCTTCTAAAGGAAATACCCAGTCAT-AGAATGAGAGATTATTAATATGTGAGTATTAAGATTTGGTATAAATgtgaatagaataa---aaattttttttaaagtttattttttaagaaaaaaatcatgatagAATAGAAGAAGTGAAAAGTAGGTGTGTCACATAAG----AGAGGGGAAAATATGATGTCCT----TCAACAAATGGATCTGCTCTAGTAGATTCTTGAAATACAATATTAACTAAGGAAGTCAGTATATAACCAGAGCTATGAATTGTTAGTTCACTTACTAGTTAATTTTGAATGAGTGGATGTCATATCTCAAAGATGTTGTGCTTGGCATtaattaatgtaattttaatgtaaaatatatttggcTTTCAAAAAGTCTA-GTTATAAAATACTACAAGAAGTTCCCATATAGAAgaattttcaaaga---ataaacactTGCTACT-------------CAAGTTAATAATTGCAGagtgaaattgaaaattcaaaaatcaaactTTA------TTGTAAGTTGAAGATCCACCTATGTAGAAGGAACACAA-------GGAAGAGTATAACCTCGAACAAAACTATGCTCTTCAAAGCGTTTGACTGGGTCTTGAAGCATGAGCAGAATGGTAGATGCAAGGCATTACACTTAAAGATAAACAATGCAAACAAGGGTATTCAGCATGAAAGTAAAAGGAAGTGGCGTGTTTTAGTGTATCAAAGAAGCAGATTTGGC-TAGATCTGAAGAT----CCGTGGGAGG--AATGACAGGAGATAGATCTGAGATGGAGAGTAGGAA-----------GAGGTGGGTAGTTGGGGTCAGACCCTGGAGCATCATATAGTAACTTTAAATCTTAACCTTTAAGCAGCATGGAATGATCACAGATGTTTAATAAGGCAGGTAATGTAAGAATATAACTCAAGCAATAGCAGATGTATAGAGTCAGAAGTAGAACATGAAAAGAAGATTTAA-GAGCTGATTATGAAAAGTCTTTGTGCACTGAGAACTGAAATGAAATCGAGAGAACTAGATGTTAGAAATGTTagca-ataaatttaatacatcaCGGGAACCATTTGAAGGAAGAGGTGAAGGTAGTACCAAAGCAAATTCAGGATTCTAGCTGATGTGCCTGATTGGGTTGTTGA-TATGTAGTAGAGAAACCGGAGGGCAGGATTTGGA---CCTATTGGGGTCAGTTTGGACAGGTTTAGTGTGAGATCTCTAGTTTATCTGTGACAGTATGTCTAGTAGGAAGTAGGTAATTCTGatgtttttcttagaaaaattcta----ttttcttagaaaataaa---------------atataaaaatttagcaTTCTTGCAAA------TTAGGGCACGTG-TGTgcgaaagagagagaaaacatttgCTGACAAACCATgtaggatattttaaaaagatgggaGCATGGACATTATA----AAGGACTGAGA-AATGTCAGTAATTTAAGAACTGAGAAAGGGCCTTGTTATTAGGAAGt----------tgatagaaaaaaatcagagtacA-------------------TAGAGATTAAATTAATTCATGTTTGGTTTTGTGAAGAGGTGAGAGGCTGAGTGGGGCATTTAACACTGCAACCAAATGAATGGAAAGACACTTAGACTTTCCACTTGTGTTAGATCATTCTGGTGAAAGTGAGAGGCCCAGGCAATAAGAGGAATATA---CTAGACAAGGAGAAATCATTTATCATCAGCCTCTTCTGTGGCCAGACTCTATTGTAGACACTGGAAATACAGCAGTGACTAAAATAAAGCTTATACCTTTTGCGGCTTTCATTCTAGTGAATGAAAGAGTGAAGGCAGTGAGGTTATACAGGAAGCACAGAATTCCATAAATCATCGGCGACAGTTGCTCTGGAGCAAAGTAAATCACAGACGAGTTTTCATGAAGCGGGGACTGGGTGGGCTTCTCTGATAAGGGATGCCTGTACATAG------------TGATCCATTACAAAATTCTTTATGCATAAGTAATTTCCTATTGAGtaatcattctgttttcttctctaggTACTGTAAGGAGATTCCTAGAGATTCATGGTGAAACCATTGAAAAAGTAGTATTTGCTGTCTCTGAGCTTGAAGAGgtattttgttaat-tattttgcATTACTTAAATCTTAATTTTACTGTTG--GCCTTTGTCTCGTCATTATCTATTTACTGGCTTTCCAGCAGACAAATCCTTATTATCTGTGCACTTACTTGACAGTGGTACTTGGTATCATTCATTGAAACAAAT-TATGTTGGAAGCTA------TGAATAAG-------------TCAGAAAAGAGCATTCTGTTCATGTTG----------------------------TCACA--------------------------------------------CTGCTTGGTTGTTGCCATTGTTTGGTGGAGCCTCCCACAGTGGAGCCGTTCTGCTTTGCTGCCTGCGTCAGT-CTCAGGGCATCATCTTGTAAGCTGACCGCTTGGTG----TCT-GGGCTTAG---------TGGAAAACCACTGCTTTG-TGAGCAAGCTCTGGTGGCTCCCTGACTGGAAACCCGTGA-----CAGCAGGGCTAGTG----CTAGGTTACATGTTTTAGTGTACATGGTTAACCTGGTTTCAGTTTATTCAGA----GTCATTTTACAAAATCAGATTTTAATCT-----TCCTAAGTTTTTCTTAGCCTAAGAGTGTTGTATCCTATTCAGC

a score=15407
s chr3           100186505 238 + 160039680 CACTGTGTGGGTTTGCTTTTGCTCTTCACTGTGTTTCACGCAGCGCCTTACTTTTCTGACACAGGCCACTTACCAAAAGCTGCTACCTCTGTACTTCCCAAGGTCATTAAAGGAGGAGATCCGGTCATTGCCGTACCTACCTGCAGACATTGGAAATGCAGAAGGGGAGCCCGTGGTGCCCGAGCGGCAAATTAGAATCAGTGAGAAACCCGGTGCCTCGGAGGGTGAGTGCTGGGGT
s HiC_scaffold_1 110144802 237 - 233722169 CACTGTTTAGGTT-GCTTCATTACTCTGTTGTTTTTCACAGAAGGCCTTGCTTTTCTGACACAGGCTACTTACCAAAAGCTGCTGCCTCTGTACTTCCCGAGAACGTTAAAGGAGGAGAGTCGCTCGCTGCCGTATCTACCTGCAGATATTGGGAATGCTGAAGGGGAGCCTGTGGTACCCGAACGGCAAATTAGAATAAGTGAAAAACCTGGTGCTCCAGAGGGTGAGTCCTGCAGT

a score=17257
s chr3           100187772 707 + 160039680 TTGTTGTTACTGTTGCTGCCTTAGTCTTTCCTCCTATAGCACTCACAGTTAGTTTTGTTGTCAC-TTTTGTA----GCTCTCTGCTGATGGAACT--TTTTGTTGCAGACAATGAAGAGGAAGATGAGGATGAAGGCTTGGGAGTGGATCTGTCTTTTATTGGCTCTCATGCTTTTGCTCGGATGGAAGGAGATATTGACAAGCAAAGAAAGTTGATCCTCCAGGGACAGTTGTCTGAAGCCGCCCTGCAGAAGCAGCATCAAAGAAAGTAAGACAGGCTTGTTCCACAGTTAGATG---------GTGTGGGTCAGGAGAGGGGTCTGACA-------GATGGTGTGGGT-CAGGAGGAGGATCTGAGTTCCTTTTGTTTAACCTTAGCGATGGCCGAGAAGGAG-GTCCTGTCCGAATTCTCTAGATGCAAAGCCAAAAGTTGAGTCAGTTA--ATGTGGGGAAGCCTGTGGTCAGATGTGTGTCTGCTTTTAGAGTTCTTACC--CCCACTGTGGGCTCTAACTGATGTGCCTTCATGCGA--------TCTAAACATGGAAATTAGGAGATGGG-AAAGCACTTACAAGGCTTCTGCTTGCATTTTTCTTACATGAAAGTTTTCCTCAGCTGAAGAGTTTTATGTCTCCCCCACTTACCCCAAGGATCTTTACATTTCTCTATTTTCTCCAAGTGTTTCTAACACTAAAGCCATCCTGAAGAAATCCTTTTAAAATCATAG
s HiC_scaffold_1 110146919 671 - 233722169 TTGTTTTTAAGTTAGCTGAC--AGTCGTTGCTACTCCAGT-------GTTTCATTTGCTGCTGCATTTTGTCATATGTTCTCTGTTAATAACAGTGTTTTTGTTACAGATAGCcaaga---agaggaagatgaaggCCTAGGAGTTGATCTATCTTTCATTGGTTCTCATGCTTTTGCTCGAATGGAAGGAGATATTGATAAGCAAAGAAAACTAATCCTTCAAGGACAGTTATCTGAGGCAGCCCTACAGAAGCAGCATCAAAGAAAGTAAGACTAACCGTTGGGACTGTTAGACACAAAAAGATACGCAAAACAAGGAAAGGACCTGACACTCTCTGCCTAGTGTAGATACACACGTATG--------TTCTCCTGTTTCATTGTAACAGT--CCAGGCAGGAACGTTCTCCCC--ATTTTGTATAGGCAGAGCTTAATGGTCA--CAGTTAATATGCGGTGAAGCCAATGTTCAAGGGCATATCTGACCTAACATTTCTACTCTGCCTACT-----------TCGTTATGCCTCCATGTGAAGTTATATTCCAAAAGTAGACAttaggaaaagggaaaagcagttacaaa-----tgtttata----------attaaaGTTTAGttcaatttaaaattcttatttcttcTCAGCTTATCCAAAGGATCTT--------------------AAAAACATCTAAcct--attccattttttaaaaatccttttaaaaatgtag

a score=6751
s chr3           100190047 302 + 160039680 TGCCTGCGATGCTAACGGGACTTCTCACA-CAAAGGCATCGTTTCATTAATTATTAAGTATTCATTAAGCCCTTGCTAACATAGCCAGCACTGTGCTGGGGTACATCTAGTAAAACAGAGACTAGCACGA----------TGTATAC-----------------------ACACAAAAGCTCC---GTTTCATTTATAGCGA---------AGGAGGACACA--AAAGGACATAACTGAGTGCAGGATGCAGCGTTTGCATCAGGCCTGGAAAACCTTGCAT---TTCCAGG------------CTGAACAATGGGCTTTATCCAAATATGTTAGTTATTGAACTTTTTTAAATTAtttctttta
s HiC_scaffold_1 110153022 364 - 233722169 TGCTTGTGACTCTTAAGTCATTTCTCGTAGCAAAAATATCATCTCGTTAATTATTAAGTATTTATTAAGCCGTTAGTAATGTGCCAAGTGCTGTCTTAGAATACTGCTAGTAATAAAGTGACAAGCAAGAAAATGCAGTCTGTATCCTCTTAGAGCTTAGGGTCATGCCTACGAAAAAGCTGCTGAACTTAAATTACAGACACGGTGCAATAAGAGGAAATAACAAGGGTCTTAACCAAGTGTAGG-TGGGGCAATTAcatgaaagctataaaaacttcTGTTAATTCCAAAGACAGAATTTTCCTGGGCCATTGGTTTTACCCAAAGGGGTTAGTTATTagtgttttaaaagtaatttagttTA

a score=28850
s chr3           100190554 1611 + 160039680 AGGCTTTTCTTGTTACATTTTTGTAGTAAGGAAAAATAAGAATATTCTTTAATTATGTTGTTTTGAATACTT-GATGTTGTAGCCACTTATCTATATAGTCTTTACTTA-CAGTGAGAATTTTTTCAAGTCATTGC-TATATACACGTCTTCTCATTAATGCACCTCTATCAATGGCTTGC----------AGTTCTGCATGGGGCAGTGGCCTCTA-----ACTCTTT----GTTGTAATGAAGCCTGAGTTCTTTGTGATCAGAAAAAAAAAAACATTAAAAATGGGTTCCATTTGTTAAAAAGTAACTTCCAAATGTTTGCTATAATGATTATATCTTTTATTTATCTAGTTATAATCGCTGGTTATGCCAAGCAAGATCTGAAGACCTGTCTGATATTGCTTCTCTGAAAGCTTTATACCAAACAGGTGAGCTTAATGAT-----CACTTATTCTT--GCTAATTAAGGATCTGACTCTG--TGCTCTGAGAGAC-TTGGTTTTCTCTGATTTTC-------TCTGTAAATACAGTGTTT-TGTGCTGACATCAATAGGTTTTGGACATCACAAGGATCTTAGACATACTGTATCAACCTCTAGTGTGTT---CTTGTGGTCTCGACAGTGCCTCTTTCACTTTGTTCCTGGGATGCTTTTTCTGTTAGGATGTTTTCTGCATTGTCAG-----------------TACAAACTTCAAACCTTACAGCACTCTCCAGT-------------------------CCCCACTTGCTCCACTGGGTTT-TGTTTCAGGCATTTCCTGCTCATTTTCAG-----TTGAGAACTTTGGTCTCCTGGGTCACTAATATTATTAAAGTTATGTTGAGTTTAAGCAAAGTATTTCTTTAAAAAAAAATAAGAGTATAGGTTAT-GCTGATTTAAAATCTTTAAACAATGTTGGCCAAGACTCTGGTCAAAATCTCATAAGAAAAAAAAGTAT--TTTCCTA-ACAGTCAAAGAAATCGAATGGTATAATTGGAGACGC------------------------ATGTGCA----------TCTCATTTCTTATTGTTTGAAT-----------------TCCTTTATGTAGTCAAATACATAAAGTGAGACA------------------------------------------------------------------------------------------------------CATGA----AAAGCCCAGGACAAAGCCTGGTCTTGTATTGAGGTTCTTGGCTCCTGACTGCATCATCTC-TTGCAGGGGTAGATAACTGTGGCCGCACAGTGATGGTGGTAGTTGGAAGAAACATTCCTGTGACACTGATAGATATGGACAAGGTGAGTCATA--AATGCTAGGCTGCA-AAGCAGCTGGGTGTAGGAAGTAAGAAGAGTCAGTGTCGGTAACTAGGGTCTCAGCACAGGTG----AGATGAATTATGGGTCTGTAGACCAG-------CAACCCTGAGAAGCCATGTGCGTCATTTCTGGTAAGTTAGGG--CTCGTTTGTCCTCTATAGGA-AAAACAGACACCAGAGGGCTCCGATTCTA----CTCCAGAAACACAGCTATTCTGTTTGGGTATGATGTAACTAGCAAGCTTTTGGTTAGAAGTACCCTGCATCCTAAGTATACAG---ACTTGAGAGCTTCTTTGAAAAAAAAAAGAAAAAATAACACTTAAGTATCTGTTTAAAAAGCATATACCAGAGGTTGCAGTCTATCCAAGATAGCAAGAGAGTATAG----TTCATATGG-GGCCAGAAAACAGAAGTCGATGA-TCTTAAAAGAAAAAGATCGTTGAAACTGTTAAGCTAAA
s HiC_scaffold_1 110156406 1803 - 233722169 AGGCGTTCTCTGC-ATTTTTTTGTAATGAAGGCATATAA-AGTAGTTTAAAACAGTATTACTCCAAGTTCTTTGATATCTTAGCCATTTGTCTA-ATAGACTTCATTTAATCATAAGAACTTTTTTA-TTCATGGAATATGCACACCTTTTATTATTAACTCATTTATATTTAT--CTTGCCAAGTAATAAGATTCTGCATGGTGTAATGGactctttatttattctttcctcattttaatGGAACCACAGTTCTTTAGGGTGAGGGAAA------CAGTAATAAC--------TTTGC--AAATTTATTTTGTAAGACTTTATTATGATGATTATATCCATTATCTGTCTAGTTATAATCGGTGGTTATGTCAAGCAAGATCTGAAGATCTGTCTGATATTGCATCTCTGAAAGCTTTATACCAAACGGGTGAGTTTAAGAATATAGCAATTTACTCTTTCACTAGTTAAGAATCATACCAAGCATGCtatttgaaactttatttttctctgtttttccattcTGTCAGTGAGTAAAATGTTTATGTACTAATGC--ACAGTGTTTGCCCATCATCCAGATCTTAAA-ATAGCACACCAgcctataaaatttttaacttaCGAT-TCTATATTGCCAACTTGATTT--TTcctattattctttttatatta--aatttttctgCTTTAACAGTAGCATGTACTCACTATTACATAACTCAGACCTTACCTAAGTTTATAATGGAGACAGCAAAATATCCTAGCTTACTACTCTTTctccattgtatttctttttcagaca-gtATTATTAATTTTCAGATTGACTCAGACTTACTTTATCCTGGATCATTAATATTA--AAAGTTGTGGTGAACTTAAACAGCA-AGTTGTTTATAAAAAGATCCTAACATAGGCTGTCACTGATTTAAAACCTTTAAG-----------AGGTCTCATTGTAAAAGC-CACAAAACtaaaaagtattgttttctatattgtttaagAAATCTGAAGATGAAATTTGAGAAACACACTTTCTGGTTTCTAACCTTAAATGTGTATAGAAtatttttccactcttttttgttttattggttatACACATCAGTGTGTTTCATTCTGGCAGATTCATACAGAGACATAACATACCTTGATCATTTTTAACCCTCCACCATCTCTCTTGCCCCACACCCTTTGCCTCTAGTTTCATGTACTAGATGAAGAGGTTGTATGTGGAATACTTTTTATGAAATCAAAGGCCAAGACAAAGAATGGT-TGGAATAGAG---TTTGAGTGCTgattaaattttctctttgtaGGTGTGGATAATTGTGGTCGCACTGTCATGGTAGTAGTTGGAAGAAACATTCCTGTCACACTGATAGATATGGACAAGGTATGCCATAAGAAGGTTCTGTTTCACAAATAATGTGTTATGAACAGTAAGTAGAATGTGAATTTAGGAATCAGAGCTTATAACAGGAGGAGAGGCTGAATTGTGTGTCTCT-GGCCAGATAGCCTCAATTCTGAGTTAGCATGT--ATCGTTTCGTTTAAATTAGGGACTTGATTTTTTCACtgtaacagaaaacagaaatcct-GGGCTTCTGTAGTATGAGCGCCAAAAACACAGCTGCTTTA-------------------------TTTTGGTTGGAACCATTCTGTATTATAATTATGTAGTAAAATTCTGa-cttttttggagaaaaaaaaa------accacttgaaTATCAG----AAGGGAAAAAAACTGGAGTGGTAGTTT-CCCACAGTAGCATGATTCCATAATCCCTCCATGTGGAGGGAAAAGAGCCGAAGTAGATGACTCCTAcaagaaaaaacagttaaaaactggtaaataaaa

a score=35903
s chr3           100193534 1453 + 160039680 ACCCTGCATTTGATTTTGCTGAGTA--------GCATTCCAGATAAAATGATATGTCGTTTTGTATTTTAAAAAATGAGACTTATTGTGAGGTTTAAGC-----ATTAACAAAGCGACTG-----TTCTTAATGTCCTC---TGCCTACTGTGCCTGCAGTTTGTCTCTAATCCATGTTAATGCCAAGGACTGTGCTGAGGAGGAATTGGAAAACAGCCTGGTTGAT--GAATCCCTTCAGTTGGTGTAACTTAGCTCCCCCTTTGCAGTT-GTTTACAGCCGAAACCCTGGGTCACATCAGCCCAGTGCTTGGGTTATATTTCTCATTTCGTTTTTAGTGTCTCTCTTAGATTTCTTAAAATAGAATACATCCCTAACCAAACAGGGTCATATTA-----GATCATCCTCGAGTTCTAGAAGCATTACCCACTGTGTTACCAGCCGCCCACAAAGGCTGCCACT--TTGCTCATTCAGATAAGCATTAAAAGTGCTAAGAAAATGAGCTTCT---GTGAGAGCATGGAAGGAGTGGCTGCACACATCGTGTGCTCTGTGGCTTGCCCT-GAGTCTGTCTGATCAACAA----------------CGTAGAGATCTTGATGGAATGCAAACAGAAACTTCAAGAATTA------------------------------------GAGATTTTATT--AAAATGAAAAGAAGTACTAAACCT----------------------TAATTCTAAATGTTTTGACATCATTGTCCTAGATGGGAGAAACCTGGTAGTTGATCCAAGAGCTCTTCCTGGTATCTGAAGATTTATTTCAGAGGCCAAAGGTTAATTTTCCTCTTTCTTAGAGCATCACAGAAAAGGACTGTGCCACAGCCTTTG--AGAGTCACTAAATGCTGGGAT---TCACTTTCTGAGAGAACTTGTT-------------------CTCACCGACCTGCTCTTTCCGACACAACTCCAGGAAGTTGTAGATTAATCTTAGGGGAGGGGCTTCCTGTCTTGACCTCTGTGGCGTGAACTCCTGTGAAAAG-GTTCTTTGTTCTT-----TCTCTCAGGCCCTCTTGTATTTTATCCATGTAATGGATCACATTGCTGTGAAGGAGTATGTGCTGGTGTATTTCCACACACTGACCAGCGACTACAATCACCTGGACTCCGACTTCCTGAAGAAACTCTACGATGTGGTTGACATCAAGTTAGTTCATTTTGGAAATTGTTTAGATAGTTTTTACCTCTATATTTTT-AATACTAAGCAGTAGCAGACATTTGTAAATATTTT-TGAAAGGATATTTTATGTGACAAAGATTTTTATCATAGGCATTAGAGACTTTAATTATTAGA----------AGCCCTGGGTTTTGTAGTAAACTAAACTCATTTGTAATCTTCTC--ACTTTGACCATTTTGAAAGAGGTTTGGTGTCATACCCAGTCTTTGTGTATAAATAATGGAAGTACAGCCTTGGTTGCTATGGTGTGTTAATGTAGTACATATCTGAGTATACTTATAGACATTATTTAACTTGATCCGGTAGCCAGTGAGTCTGTTGGGAGAGATACT
s HiC_scaffold_1 110158214 1501 - 233722169 acCTTGCATCTGATTTTGATGTGTACTTGTATGGCATCCTGGATATTTTGCTGAATCATTTCATATAC--AGTAATGAGATTTAT-GTGAGGTCCAAACCACGTGACAACTAAAAGGTTAGTATTTTCTTAATGTCCTCCTCTGTTTGCTCTGGTAGTAGTTGGATCCCAATCCATGTTAGTGCCCAGCGCATACCTACGGAGGAGCTAGAACACAGCCTGTTTTGTAGGAATCCTTTCAGGCGTTACCTCTTAGTGTCTGCTTTGTAATTTGTTTACAGCAAAGGCACTAGGTCATACTGGCCCTGCCAT---Attatatct---gttttgttttt-----ctctcttagaTTTCTTGTAATGGAATGT----TTAACCAACCTGAGTCACATTAAGTTTGACTCTTTCCAAGTTTTATATTTGCTACCTATCCTACTGCCGTGTACTGACCAAACCCAATATTATTTCCTCATACACATTATCACTAACAATGCTAAGAGAATTATCCCTTACAGTGAG-TCTTGTAAAG-----CACTATCCATTATATCCTTTTATATTAATCCTTGCTTATTTTCGAGCAATGAGTTTCTGAGGAGAGGCCATAAAGTTTTTGATAGAATTCAAGTGGAAGCTT-AAGAATTATtaaaagtaaactcaaggccatctaaactacatagggagaccctgtctcaaaaagacaaaaaaaaataaaattatgaaaagtcTAGAAATTGTAGTActtctaaacatttttatatcattaCCCCAGA-GAGAAAAACATGGTAGTTGATCCAAAAACT---------------------GTTTCAAAGGATAGAGACTAATCT--CTGTCACTTATGACAAGACACACAGGGGTTATACCATAGAATTTGTGAGAACTGCTCAACATTGAGATGATTCACTTTCCTGaagatctttttaaagaaaattaatactCACCCCACTGACATG-TCCATCTGCAATGAGTGGGGCAGAGTTTAGATcagtttt-------------cctgtctcagcctctgtgaAATAGATTATTGTGCAAAGTGATCcctgttcctctttcttttttaggCACTCTTATATTTTATCCATGTAATGGATCACATCGCTGTGAAGGAATATGTGCTGGTATATTTTCACACGCTGACCAGCGAATACAATCATCTGAACTCTGACTTCCTGAAGAAACTCTATGATGTTGTTGATGTCAAGTTAGTTGTTTTTccaaattataaaga-aatcacCACTTTCTTGCTTTCAAATGTTAAGCAGTAACAAACATTCTTACCTATTCTGTGAAGGGGTATTT------ACAAAGATTTTTATCATATA---TAGCTAATTTAATCATCAGAGAACTTCCTTAACTTTGATTTATTTAGC--ATTAAAGTCATTTGTGACCTTTTCCACTTTTAAACACCTTCAAAGAGGATTGGAGTGATTaccaatttttgttttaaaataacaaaaacac---------------------ttaa--aaatacat---------taataataaCCATTATTTAATTTGATCTAATAGACTGTAAGTTTATTAAGAAGAATACT

a score=22524
s chr3           100195487 1239 + 160039680 TATTGCCCAAGGTATCACAATTTTATATACAGAATTTAGATTTAATAGACTACTGACTTGCTGCTAGAAATTT---TTCATTAAATTATGTTTCCCTTG------------------------------------------------------------------CTATAAGGATTTTCTGGGTGATACATTTCCTAAATAAAAAG-ATTATTCTATCCTCTTGGTTGCTATTT---TATTTGTAGCATCACATTATCTTTATTGGTTGGGTTGAAAAA-CCATTATACAGTTAGGGAACAAAGAAGGTAAATTACCATAAATTTCCATTGCCTTCCACCCACCATCAAATCTCATCTTAATTAGCAATAC-AATGCTTTCATTAGCTAACAGACACTCATTTAATGTGCTTTAAA--------GTATTT-TATAATGAAGCTGTACTCCATTGTATACCTACTCCTGTTTCTAGCTAGCCCTTCAACT-GACACTGCCCTCAGCTAGAATAATTGTCCTG-ATAGTTCTCTGAAGTCCTTTACAATTGACGTCTTATGACTCACTGGAGATTATTAAACTACTGGACAACAAAGTCTTA------------AGATG----------TGCCTCCTAAAACAT---GCTTGGG------------------------GTAGTTGGCTG--------AGGCCCAGGTCA--GGTTCTAGGCGTTTCCTCTTGGTCATCAGGTTATCAGAAC-----AGTGGC-TCAGACTAAGTATGAACTACAAAGCTTTCATAGACTTTCCAGATCAGGCAGTAACAGGACTATAACTTTTACTTCCTAACTTTTACTACAATTTTAGTGATTTCAAGGTGACTTAATTATATATATTTGAGTTCAGAGACTCCATCATGGTATAAAAACTAATGTG------TAATTTTTTAAA----AGTATAATTGGTTTTGTTCTTCCTTGAGGTAGCTCTTTCACAGTAAGAGGCAGCAATTAGTGCTTCGTTTAAAA-TAGGCAGTTTAAATAATGAAATGTTCATTTAATTATTTGACATTTTACCCCAAAGTCAGTATAATAACTCCTGCTGCTTTAAAGGTATTTTTCTCAGTGTGAATATATTTATATACTCAGGTAAAAGTGTTGATTGTCTGCACTCTTGAGTAGTTCTAATTGTAAATGCTGACTCTTT-----GTTTGTTTTGATTAGATACAAGAGGAATTTGAAGGCTGTTTATTTCGTTCATCCAACATTCCGTTCAAAGGTACAGTGTTTGTGTTTTC--ACTAAGTCCCGGACTTACATGTACTGACTGCTCAGGACGCTGTAACTGAGGACTGGTTTACTGTTCTCATTGGCTGACCTGTTGTTCCTGTGTCTGC----TGTGTCTGCCTCT
s HiC_scaffold_1 110159765 1371 - 233722169 TGTTGCCCTAGGTTTCACAACAGT---TGAAGAATATGTACTTAGTCAGCTGTAGAGtcaaaactagaaaattattttcGTTAAACTGTATTTCACTTGAGGTGATAATAGaagttttaactttaaaatacatgatACCCTACGATAGTGAGATCAGATGTaatgctttgaattttttctcatccatacatttcttaaataaaaaatggcaTTCTACTCTTTTGGTTGGTATTTAGTTGTTTGTAGCA--ACGTAATTTCTATAGAATACTTTGGAAAATCCATTGtataattaacatacaaaaaagaTAG-------TAAATTCCCAGCTGTTTTACTCttctcttaaatttcattttaattagaaatattaatgCTTTCATTATCCAGTGAATACTT-TTTAGCTTGCTCTGAGTGTGGCTTGTATATATCCAAGAAAGTTTCACTCCACTGTGTCCTTACTGATACCACAAACCAGCTTTTTAACTTGGAATAGGCCTCAACTAGGAAAGATAAAGTATGTTGTTCTCTGAAGGCTTTTCTGTGTAACTTGATGTGACCATATGGTGGTTACTGAACTATTGAA-AACTCAATCATACCTAAAAAAGCTAGATGATAAGATTTTTGATTCTGAATTCATATGGCTTGGGTTCAGTTTTCTCCTCTATTATTTGGTAGCTAGATGTCTTTGGAAGGCTTAAGATAAAGGCAGTAATAGTACTCGTTTCACAGAATTGTTATGAGAATTTAGTAGAAGCATTACATTATCTGGGATCTACTAAACTCT-----ATTTGTGATATTATATGGCCATTaaagt-tattgttttgtttctaatttttgctat--tttaagtgGCTGTAATGTTATTTAATT-CATGTATCTGATCCCGGATATCTCATCAccatataaaaaataattcaacaaatttGTTCATTAAATACTAATTTACTTAACTTTCTCTTACCTTTAGGTGGCCCCATTACAACTTACACAAACACTTCACATCTCCTGTAAAACTTAACATTTTAAGT---GAAATGgtctcttaattatttttcatatcaCCTAAAATTCAGTGCATAAGTGAGAGCtgctttcagaatattttt-tgtctgtgaatatatttatgtatttaggcATA-GAGTTAGTTCTCTTTAATGATGACTGGTTTTAG----ACATGTTGACCCTTTTGCCTGTTTGTTTTGATTAGGTACAAGAGGAATTTGAAAGCTGTTTATTTTGTTCACCCAACATTTCGTTCAAAggtacagtatttttcttttctaactaaTTATTAAATTTAAGTGTATTACATGCTCAG------GTTATTAAGATATAGTTCA-TCCTCTCGATTATTG--TTGTCACCATTGTGACTGCTCATTGTGACTGCTTTT

a score=135862
s chr3           100201687 6852 + 160039680 [encoded data, 7722 characters]
s HiC_scaffold_1 110164223 7163 - 233722169 [encoded data, 7722 characters]

a score=39078
s chr3           100225270 3101 + 160039680 ATAAACGATAAGGCAGCATCTTCTACTAGTAAAACATTTTCATATCCTTTATAAATCTAGATAAGCTCGTTAGCCCTGGATATTTTAA-GGATTTACCAGAATTATATCATTTCAGAACAGCCTCTGTCAGCCCAAATCGAATAGATC----GCAAGGATGTTGCCAAGGCAAATTCCTAAGAAGAACACAGTGCTATAGAAGCAGTTCACGGAGTCCTGAGAGTCTTGGTCGGTGCTCACATCCTGTTGCAATGTTAACAAGGATTGGCAGCCAGCCGTGGTGGTGGGAGATGAAGAAGAGCAGCCATGGTGAAGTCAAGATTCCTCAAGTAGATATGTTATGGGATGAGTC---CTAGTCTAGGACATCGTGTTCAGTGATGAAAGCCAGGAG-------CACCTCTAT--------TTTCT-CTTTAATGAATCTCATTTTACTGCGAAGTGGTGAAACAAACACATTCCAGCTGAGAATTGTTAGCCATGACCTTTGTTCGGTGCGTAATATTCTGGATGTGCTCTGGACCGAGGTGTTACACTT-TGCAGCTAAATTCTTA--CATATGCAGTGTCATAGTAAGCAGTGAACATTTGAGAAGAGAACTTCATTTGAAACCGAGACTGTTCCAGGGAGATTATTTGGTAATCACTTCTCACAGGATGACCATGTTTAGCCATGGGTCTGGTCAGGTGTGGCTTGGCAAAATTTTTCCACAAAGAATCAGATTTAGAGCTGagtcatgtcagatgcctgta---atcccaggacttg---------tgaggcagaggcagaagaataacatcaagggacagaccagcctggtctgtggagtgagttctgtggtaccccaaaccacagaggaaaaccctctctcaaCCTCCGTGTACCCCTAAGAAAATCAGATTTGAGAATGTGTTGAACTTGAGTTTTCAGCGTGGCTAAAAGCTATCCTGTGCCCACCCCTGAGTTTAGTTTTTAA----ATCTTTTAGCTT--TGGATATGAGGAAGGTACACAAGAATTAGAAATTGATTTTCTTTGCCTGTTCCATAGGGAATGTTGACAAAAATATGAGACCAGCTAACTACAT--TGTTCCACAACACTTTTTC---CTGAGTAAACCAAAGGACCCAGTGCATCCAATCTCAACCT-TTGTAATAGGACCTGATGTCCTGACCAGGATGGGACATGTTCCTTGAC----ACATTTGTCCTATTTCATGTGTGCATGTTTATATAACTACATGTTTACACATATGTGTACATTTGAAAAATGAAGTACAAAGGAAAGAGAAGAAAAACAAGTGCTGATAGACCAATGAAACAAGGAAGGAGAGTgggcctaggcaaatggcccagaggctgggagtgctagctgcttttccacaagatcttggctcaatctccagcactcacatggtggctacaaccatctgtcactctgattccagaggtgttggtgggggcccagcaagatgctaggcacacatgtggtacacagacatacatgcaggtaaaacacacccaacacaaaacaTATTTTAAAAACaggaaggaaggaaggaaggaa----------ggaagggagggagggagggagggagggagagaTCTCCTATATGGTGTGCTGTTGCTAGCAGATGACTATGA-CACTTGGAAGATGAGATTCCAACAGAGCTTCATTCT----AGGG---------ATATGTTAAGCAATACACTCCCATGAATCTGGGAGATGTGATGTCGAAAGGCCACATTTCTGGTCATCCCAAACTATGATTTTTTTTCTTTGTA--TTTCTGAAACCATGTTCCTGCCTTTTTGCTTGTCACATTATTAATA---AGCATGAAT---AAAAAGA----------GTGAGGTGAGGTAGACACTAATATTTA----TAATCTGCTACTGTGTGCTACAAGTCATTTTGAATATATAAATAGCTGAGTCTCAACAATCCTGTAAGGTCGAAACACTtgtctgtctgtctgtctgtttgtttgtttgtttgtttgagacaggatttctccttgtaaccctggctgtcctggaactcattttgtagcccaggctagtctcaaactcacagagacccacctacctctgcctcctgaatgctgggCCTGCCCAGTGAGATTAGAATTTTTGT----TCTTGTTTATAAGTGAGAACACAAGAGAACAGAGAGAACAA---CCAGTGTTAGCTAAGTCTCA-ATCTAGATTCAAACATGGTATCGAAG-TAGCCGGCCTCTAGTTTACTAATTCAAGGTGTATCATGAAAACAGGGTCACCCATTGATTTCCCTAGGGACTTCCTGAGAGTTAGTGATGAGGTTGATGGAAAGTCAGGCTTTCTAACTCCCAGTCAGCTTT-TAGATCTCTCAACTGACACCA-TGCTAAAAATACCCATTGGTGGGGTAAGCCTTGTAGAGGTCAGC--------TTGCACAAAGCACACAGGAATGTGCATGCAATTATATGGGAATGTATTCTGGATCATATAACTGAGTATTTTTGTTCTATCATGTGGTTTTCCCCCCTCTCATGACGAAACTTG---TGGCTGTCATCCAAGTAACTACATAGCCCAGGATGAAGCAAGAAATGGGCATTCTCCTATGCTTGCTCAGAAAAGAAAAGAATGTTCTTGATAAGAGGAGGAACTTAGTGCATGCTGATTTtaaataaataaatatatactatttatattaaatatatacatactatttatattaaatatatacatacatacatacaaatttaAAAAATAATTCAGTATATACTTATAGTGGGGGAAACAGTGTTTTATATAATAATCCTTTGGATTTGCTTATTTATTCTCTTGATTTTCAGATGTGTTTTGACCAAATAAATTTTAAAAATGAC------TTGACTCTAGCCC--CTCCCTCCACAAGAGACAAAAACCCTTTGCTATAAAACTTCG-ATTGAAAGT--AATTCTAGGACTCAGGCTCTCTTGTAAAGCATACTTGTCTCTGACAGTCTTAGTCTATCCACTGCTACTTTCCATATTCCAGGTAGACAAGCCATCGGGACCTGCAAGTTTGCAGTCCTACAGCTTCAG-CTGCCTCTGCAGTCTTGCTTCCTCCCTAC--CTTCTTTTTCCCTTACCTCCAAACAATTCAGAACACATGTCA--------CCAAGGGCCTCTTTGCCTTTCTATGTTCT---TTAAGTAT
s HiC_scaffold_1 110184412 2522 - 233722169 ATAAACTAAAAGGCATGATCTCC-AGTGGAAAAGTATTATCACATC-TTTGTAAATCAAGACCAGCTACTTAAT--TAGTTGTTTTTATGGATTTACAAGAATTATATCATTGAAGAATGACCTGT-TCAGCT-AAACGTAATATACCAAATGCAAGGACGTTGCCAAGGCAAATTCCTAAAAAGAACACAATGCTACAGAAGCAGTTCACAAAGTCCTGAAAGTCCTGGTCAATGATTACATCCAGTTGCAGTGCTAATAAGTATTGGCAACCAACATTGGCtgtagga---gaagaaaagaagtgaCAATAAAATCAAGATTCCTCAAGCAGATATGTTTTGGAAGGAGCTGGAATAGACTAGAACATTGTGTTCAATGATAAGGGCCAGAAGATCTGACCATCTCCGTAAAGACgctttctaatttaaaaaataccattttaCCATAAAGTGTTGAAA-ACAAACATTTCAGCAGAGGATTGTTAGTCCTAACTTTTGGTTAGTGTATAATATTCTGGGTGATTTACGGACAGGAATATTATATTCAGGGATCcgaactcgtgacctcatg------cctgccaggcag----------------gagcttaa---gccactgagctaaatccctgg------ccctatactTTCTTGTCTTA-----------------CATAGTACTATTCAAGT----------AAAAATTTTGCACA------------------TGTGGTGTAACAACTGCAAGTGAACATTTGAGAACTTTATTTGACCCTGAGGTGATTCCAGAGAAATTACA-------------CGGTGTAAT-TATGGAATAATTTT--------------CCATAAAGGAA------------------------------------TGAATTTGAG-------------TGGATCTTTAAAATGTCTAAGAGTATTTCTGTGGGCCCTCCTAGGTTAAATTTTTGACTATGTATTTTAGCTCCATGG---TGAGGAAGACACATAGAAATTGTGAATGAatgctttctatatttttcatagGAAATTTTGACAAAAATCTGAGGCCAACCAACTACATGCCTTGCTAAAGCGTTTTCTCATACTGagtaaatagaa--attttatactttt--tctcaACCTCTTATAAGAAAAACTGGTATTCTGACC---------CAAGTTTTTAGACTTTGACCTTTGGCACATTTGACTTATCCTTGTAGACATAGC--------------------CACACTTTAAAAATGggatac-----aaataaaagaaaaactgatgtTAATGGACCaaccaaagagaaaagaaggg-------------------------------------------------------------------------------------------------------------------------------------gaaagaaactaacca----------------------------------------------------------aaaattaaggaagaatgaatgaatgaattactcTGTCGGTAGTG-----------------GAAAGAATTGTTTTGATGAACATGCTG-TATCAGAGGATAACTAAGGCCACTTCTGAGAAGACATTCTGAC--AACTCCTTTCCCACAAAGGTTTCTCTTCATAGGGTAGACAATG-------GTAAGAGTGGGAGAAGTGGAAATGGAAGGCCATGTTTCTGAGCATACTGATTTCTGTTTGCTCTTCCTTGGAGTTTCCTGAAGCCATGTTCCTG-CTTTTTGTATATCAGATCACTAGTAAACAACATGAATTTCAAGGAGAAGCTGAAGTCGTGTGGCGAGATAGATAATGATAGCTAAGAGTTATCCCTCACCACACTCCAGGCATCACTTTAAATACAT-----------------------------------------------------------------------------------------------------------------GAACACATTT------------AAGTCTCACA---ACAG--------------------------TGCT-----------GTGAGATTAGAACTTGTATTGTCTCCTCTTTATAGTTGATAGCATAGAGGCACAAAAAGAATTATGGCCAACATCA--CAGGTGTGGCATTGAGATTT-AACCTGGCATTGAAGACCGCAGGCCTCCAATTTTCCAGTTCACGGTCTGTCCTGGGAATAG------TCAGTTACTTCCCTAAGAATATCTTGTGAACTGGC-ATGGGATCAGTGGAAATTCAGGCTTTCAGACATTCAAACGTCTTTGTAGTCTTCACAGTTGGTACCATTTCTAACAGCACCCATCGA-ATGGTAGGCCTTGAACAGTTTAACACTGAGCTTTATATAAAACAGGCAAGAATATACTAGTAATCCTGT-GGAATAAATACTTGATCTCAGCGCTGAGTG-TTTTGTTCTAATATTTAACATTTGGCCTTTCTATGACAAAACTTGGTCTGGCCACCATTCAGATAAGTGCACAGCCCTGGATATAACAAAAAATACACATTGTCCTGTAGTAACTT-----GAAAAAGAATGTTATTCATAAAAGAG------TAG--------GATTT--------------------------------------------------------------------------------------ATAACTCAGCATATAGTTACAGTCAGAAAAACAAAGTCTGGTATAATAATATCTTGAGTTTACTTGTCT----TGATAATTTCCAGATTCATTTTGATCAGGTAAATC----AgatgattttctgtttgtttcatccCTGCTCATTTCATGAGAAGCAGGAATTCTCATTTACACAATTTTGTGTTCAGAGTGAAACTGTGGGATTCAAGCTATATTATGACACATATTTGTTTCCATCAGATTTGGTTTGTGCTGTGCTAATTTCCACATAC-------ACTTTTCATCATGACATTTAACATTGAGGGCACATGACCCCAACCTTCTTTCGTGGCCTTGTCACCTTACcattactttcttttcctttacatcAAAACAAATTG------ATGTCAAGAGCACTCCGAAGTCTTttgaagttttctattttttctattaagtat

a score=20428
s chr3           100238755 1093 + 160039680 ctccactctttctgttttgttcctggctatttttagttggtttg-taggaggtctctatcttgttaagaaagttggCCTTTTGTCTGTGGTATCACAACATTTTTGAGTTA-GAATAATGACCTTACAATAATCTAGTTAAGTACTGTAACATTCCAAATTTAAGAACCAACTCAAGAGTGCTTAATGACTTGCAAATGTTGTAA----------GATGTT-TACTCTTC-TTTAGCAATTTTTTT---------TATGCTACATAACACAGAATCAACCCATTCCTGCCTCTCCAAACATGTAAGAACT---GGTTGCCAGGACTTTGCCCCTTACAACATCTC------TGATTCATG--CCACCCAGGAATAGATCTCCTTCTCAACTGACACTACACAATCTGGATTCACCACATTTGTCTTTGTCAATTCTTATACCCAGTAAGCAAACTGACTTCTTGAAATTTCCCATAACTTCTAATTCT---AACAGTCTTTCAGAGTAGACTTACTGAGATCTTCAACAGGGGGTGACATGGGGGTTGGGGGCTGTATTGGGCGTGG-AAAGGGATGTAAGGA----AGGAACTTCAGTTTCTGCCTTGCTTAACAACCCATTTACGAGGACAAAGAAAACACTTAATTCATAAAAAAGAAATGTGTCAATTTTGTCAACAATTACTTGTCAAAACTCAAGGCAAACAAACCC----AGTGATTAAGTAGGCATATATCAATCAT-ACAGGGGTCCTCTAAGTTTTCAGTTCTGACTT----AAAAACCATCTCTATGGAGCATAACATTGTGGGCTGAA--ACCACACAGTCTGGTTCTTAGGAATTGTCACAGACATCATGACTTTCATGCTTTAAAGATGCTATTGTTTGCTTTTCTTCATTTTATTATAAGTAAGCTGAACA---GAAATAGACGAAATGACTTGTTTAGACAGCCCGATGG----GTCTTCAGCGTCTCACTCCAGGACCAAGGTTCTATCTCACTATG-CATAATGCTTCAGTTTATCAGAGACCTGGAGAGAAAAGCAAAGGG---TCAGCTGGAATAGATAAATA--ACAAGTTTG---TCGTGG----ACTTGACTTCTGGTAAGAGACT--AGAGTACAAAGAGAAGACTGCAATT------------TAGATTTGACTT
s HiC_scaffold_1 110191651 1107 - 233722169 CTTCACTCATTCTGATTAGTTATTggatttttttagtttatttggtGAAAGGTCTTTGTAT-GTTAAGAAAGTTAGCCCT--GTCTATAGTACAGGAATGTATTTGAACTGTGAATAATAATCTTACAATTATCTAGTTCAATAT------GTTCCAAATTTAAGGA------------TGTTAAATGACTTGCAAGTGTTAAAATGCAGCCCAGGATTTTAGATTCTTCGTTTAGAAACCTTTATACTGTACCATATTATCCCTAAAACAGAATTAAGT-ATTCCTCATTCTCTCAAAATGTATAACCCCTGGGATGTCAGGACTGTGCCCTTCTCAACATCACCATTACTGCTTGCTGATCTACTCATGAT--GGTCTCCGACTTC------------CAGCTTAGATGTATCACACTTGTCTTCATCAAATCTTAGATTTCTTGAGCAAAATGACTTCTTGACATTTTCCACAGTTTCTCATTCTTGAGTCAGTCCCTCAACAAGAACCTATCTTATTCTGCTA-----------ATAAAGATC----CCTGCACTGAGTTTGATAAAGGGATATGAAAGACACAGAAAATCCAATCCCTGTCTACCTGGACAACCCAtttgagaaaacaaagcaaatagtgcatttatttaaaaataa------------gttcctAATTACTCTCTAGTGCTCAAAGCAGACAATTCAAATGAGTAATTAAGTAGATCTGTGTTGCTCATGAAAAGGTTCCTGTAAGTCTTCACTTCaggtttagaaaaaaatgatgcaTGCAGATTACAACATCATCTGCTAACATACAGCACCCTCAAGTCTTTAGAGAGCATCACAGAAATTA----TCTCAATCTGAATGaaggttcttttctgtttttcat-gttaTATTTGAACAAAGTAGGATAATCGAAAGACTTCAAATGGCTTTCTCAGATGG---GATAGAAAAGCCCAGAGCTTCTCCCTCT-GGACCTGTGGTCT-TTTCACTATACCATGCTGCTTAAGTCTGGCAGAGCAATagaaaagaaaggggaaggaGTTCAGATAGAATCAATTACTAGTACAATCATGGATTCATAGTACAACATGTATTCGGCTGGGAGGCCTGggagtaaaaggaaaagaatataattttaaaacccGACTAGATTTGAATT

a score=38329
s chr3           100241378 1691 + 160039680 ataacaAGTAGGCCTAATATCCTCATGGTGAAGGATTCAGGTTTTAGCATAAGAGCGATGGGAAACTAACGAAGACATTGGATCCAGAAAGGAA----------------------------GGAAAAGAGGGAGGGAAGGAGtt-ttaaattgaggtaaaattcacttaacacagt-ctaaccatttaaaattaactgttccagtggtgtc-actgtgcttagagtactgtaaaaccatcaccAATAA-------TAAAAGACCACTGTAGTTGCCACGTAGAAAGTAGATGGAGCAtgctgtggtctggatgtttgtat-gccttagtcatgtgttaaaatccta-ctccccaccccacacacactgtaagattatcacaaggtgggtctttaagaagtaatttggtcaagagctctcttgagtgagatcagtggccttatgtaggg--cttcagagagctgccgtgagctaccaattgaagatagagaagtttctagatgtgtaccagtaaataaaccACCTTCTA------------CTGGTACCATGATTATGAAACTGCCCCAATGCCCCCAGT-----------------------------------CTCACCCCACCCCACCTCA---GCCTCCAAGATG-----------------ACAAGAAACAAATTCTCA--------TCATCTG--------GGACAACCATGG------GGTAGTGAACCTTCACAGGC-------CAGGCTCTTGAGA-------------AAGCATCAATATGGCTGAGAAAAAGATTCAGTGCAGTATATGA-------------ATAATACCTTGTAACCTTCATAAACTCCAAGATGTTGGGACAACCCTTATGAAGAGGATTTTATGATTATTAAAGAACACACACTCTTCTGGATGTCCTCTTAGGGCTTCTCTGAGTCCTGAGAGCCCCTGACACTTTAAAGAGGGATAACCTGCCTTTGAGACAGTAAGGAAG-TTTCCTTGAAGATCTTCTTGATTCCATGTAATGCCCAAGGGCTTCCAGAGAACAGTCCAGGACATTATCTGACCCAAGGTTTGGTGAGAACCAGCA-------------------CT--------ACGTCACAGCCTGGAGGCAAACATGGGAATTGGCAG-CTTTGATTCGGCATCCCAGACACTACATGCTTAGGAATTAAGTGCCCTGACGCCTGGGTTCTCGGACCTCAGTGGTGTCCAGTAAAAACACACTGGGTGGTAAGGCACTAGGCCAGAGAAAGGAGAATGCTTCCAGC---ACAGCAACACTTAGAGAGGACAGGATGTCA-CCAGAAACCTCTGAAGACTGGGAGTGCTTTCCTCCACTATCCCTAAGGAGTTTGTGTCTGAGCTCTTGTGCATAATGGGACTCAATTTCAAAAGCTGTCAG-------GGGATGCTTCAGTGATAAGAACCTTCAAGAAAGACCCTCTCCAAAAGACAGATATTGTCTTCCTTACCTCCGTCTGTTGCCTTGAGGATCTTGCCATGAATCCACATCTATTTGGTTTATAATCTTTGCTGACTCCTCTGGAGAAAGTGACCCCCCCTTTTCACATA------TGTCTTAGTATGGAACATAAAGGCCTCAAATGGTCTGGGAACCCTTTTTCTTAGTGGATATTGTCTCACCAAGCAGATAAAGAAGCTGAATGAAC-CCTTAAAGTCAGCCAAGTAATAATTTTAGTGCTATTATAAACTATAAAATGGCCCTTCTTTCATAACCCTTC--ACCTTTA--CACAGTTAGaactg--------------tagactccatgccaac------agtatctaaatcatctggtacttgttagagagatgcaaattctaagactctttggctgaccaactgagtgagaa
s HiC_scaffold_1 110194165 1827 - 233722169 ATATCAGGTAGGTCTAATATTTTCATGGCAATGAACTCAGATTT-ATTTTAGGTGTAATGGGAAagtattgaaatattttcttccaagatGTGATCTCTCCTATCTCaatagatagatgacagataaATATATAGATAGGTAGATATTAAATTCAGGCAAAACTCGTATAACACAGCATTAACCATTTTAGAGTATGTGTTCCATTGACATTGAGTATGCTCACAACATTATGCAACTGCCcccagtttctatttttaaaagatcattctgGTTACCA-ATGGAGATTGGATGATGAGTGCTCTG-TTTCAATGTTTGTGCCTCCCTATTCACATGTTAAAATACCAGCTGCCCAA------------ATGATGGTATTTGGAGATGGATATTTAAGAGGTGATT----CTAGAACTTTCTTAAACGAAATTGGTGCCATTACAAAAGGGACCCCAGAGAGCTATCTTGCTCTTCTACTT---------------TCTAGGCATGTAGCAAAAGAT------CCTCCTGTGAACCAAGAAGCTGGTATTTTGATCTTTGACTT---CCaat-cctccagaactgtgagaaatacatttctattatttataaactATTCAATTTAGAGCATCTCAAGTGCACTAAAGTTGGGGAGCAAGAGCGTAAAACAAGAAACAGGTTTGCAGGTTGATGCTATATGCAGAGGAGAGGCGACTGTGGCTAGGTGGTAGTAGA-----AAAGGTGAGTAGACAGATCTTTGAGATGTAATGTTTAGGAGGAGTCAAG--GGCTTTCTAACAAATTCAGTGCAGTGTGTGATAGGAAACATATGAAAACACTTTGCAAACTTCATAAACtacaaaatgtt---aacatttttatgac-aggattttataattattaaagaaaaggC--TAGGCTTGATGGTTTTTCAAGGTCCTTCTGAAATCTGAGACCCTCTGATGCTTTAAGCATGGGTAAACCACATTTGAAACAAAGGAGAAGATTTTCTTGAAGATTTTTCTGATCCTATGCAGTGCCCAAATGCTTTCAGAGA-CAGTTGAGAGCATTATCCACCCAAACACTTGGTAAGAACATGCAAAGCCTGACTTCCTCCAGTCTGTGGGGAAACGTCATGGTCTGGAGGCAAGCATGGGACCTGGCAGGCCTGGCTTCAGTATCCCAGACACTACATACTTAAAAAGGAAGTGCCCAGATTCCTGGACTCCCAGACCTCAGTGATGTCCAGTAAAAACACACTGGGTGGCGAGGCCCTGGGCCAGAGGTGGGAG--TGCTTCCAGCAGTACAGCCCCGTGCAGATGACTCTGGTTGACAGAGAGAATCACTTGAAGGGTAGG-GCACATT-CTCCAGTATACC-AGGGGACTGGTGCTCAAGCCCTGGTGCACAGTGAGACTAAATATTACACCCTGCCAGCATCCCAGGTCATATTCAGTGGCAAGGGCCTTTCAGAAAGTCCCTCTCTAAA----AGATATTCTCCTCCCTCCCT-CGTTTCCTCCCTTTTTCTGCTTGCCATGAATGAAAATCTATTTGTTTTATAATCTTTGTGACCTCCTTTGGAAAAAGTAA--CCTCTTTTTCACATAAAGATTTGGCTTTAGATG---------GGCCTCAACTGGGCTGGGGAAACCTT---------AACAGTTTCTCACTAAACAG----TGAAGCCAAAGTAACTCTTTAAACTTACCAGAGTGATAATACCATGG---TTGTAATTTGTGAAATGGTCCTTTTCCCCCATCCTTTTTAGCCCTTAATTACCATTAGAACTGTCATTCTCAAAGCATGTACACCAGAACAACCACATTACCATCTCTATCACCTGGAATGTGTTAGACAA----AAATTCTAGGAACCCACTGCTGACCTACTGagtaaaaa

a score=87939
s chr3           100243637 7657 + 160039680 [encoded data, 8455 characters]
s HiC_scaffold_1 110196027 7009 - 233722169 [encoded data, 8455 characters]

a score=41710
s chr3           100251305 3762 + 160039680 [encoded data, 4163 characters]
s HiC_scaffold_1 110204671 3649 - 233722169 [encoded data, 4163 characters]

a score=7480
s chr3           100252136 271 + 160039680 TCTTACCTGCTGATTAGTGCATG--------TCCTCATGACAGG-CTGTGAGGACACTTTTCTTACCAGTCCCCTTACCTGTAGCTGCCTGATAACCCAGGGATAGAAAGAGAAAAGCAGCAGATGTGGATCAGAAATCCTTTTATGCAAACCTCTTTAATATTCATGTAAAGTGGGACACACTCACTTCTAAAATGCAAGCTTCCTACAGCCCTCTACTGATCTAGAACCACAGAGAGTTCACGTTTCCACTAGCTCCCCCATCCTTTTAATCTCACAA
s HiC_scaffold_1 110205175 266 - 233722169 TTTTATCTGCTGGGTAGAGCAAGGGAACAATTCCTCACAACAGAACTCTTAA-----TTTCCTCACCATTTTTCTCAGTGAGAGTTTCTTGATGTCCTAGGAGCAGAAATAAAAGTATACTGGAAACTGATCAGGAGTCCACTTATATACATCACTATAACTTTTGTCTAAAGTGGTACAAACTGACTGATAAAATGTAAGACTCCTGCAGCTCTTGGATGATTAAGCACAGAACAGGGTTCACTT--------GCT-CCCCATCCTTTTCATCTCAAAA

a score=26310
s chr3           100266733 804 + 160039680 TGAGACTTCTCTCCTCTCAACTCTTACATATCTACAATGACT---AAAGTTTGGCAACAGCCTAATCCTAATAGACATCTCCCTGACTATGCTGTTCTGGGTTAATTAATCCCCCTTTCCACTGAGAGTTGGGCAGACTCTGTGGTATACTAAAAACAGACATACAATTTCCTTCTAACAAAAACTGTGTTATGTCTTAGTGCATTTTCTTTTAATCAGTAGTGACAGAG--TATTTCTATG------GACTGGCATTTCTCATCTAGAGTCACTG-TGATTCACTCTGGAAAGCACACTGACATTTTATGTTGCTCATAAATGTTTGAAAAAGAAACCACTTCATAGTCTAAGATAGGAAATCACAGGCTTGCTTACAGGGATGGTTTATCTGAGAGCTGCTGGCTTAGAATGAAATAGAACTCCAGTTCAGCCTCAAATTGAGCACTATTTGCTTGCCACTAGGTGATACCATG----AGCTCATGCCTCAGAATCCTGCTGGCCACTTCT-GCTGGATTGGTT------GGCCCATGTGTGTCACATGGTCACCTCAAA---------CAAGCTGGTTTTGATTTTTAAGTTCCCTTGCTTCTTTGTGGCTTATGCCATTCTTCAAGAATCTGATTTCTATGATAATAGAAGCTTATATAATTCCAAACACGAGATCACATTTTGTATTCCATTGGCTTTAGTCTG-----AGTACCCAGTAATTTTGAATTACATAACTAAGAATCTAGTTGGCCTGCTGTGAACCTATCCCTTGTAGCCTTGGGTGAGGGATGAGGGCAAGGATTTCTTCTTTGGGTATATAGAGGACACAGATGG
s HiC_scaffold_1 110225332 814 - 233722169 TGAAGTCCTTTGCATCTTCACCCTTGGTCTTCcacaattttttttgaaatctgaTAACAGTTTAGGGACAGTGGACAACTTTCTGATTAGGCCTTTCTCAGTCAAATTTCGCCGCTTTTCTCTGAAAGTCAG-CTGGCCCTGTGATCTGCTTAGAAGAGGAATGCTATTTCTTTCTAGACAGAGTCACAT-ATGTCTTAAtagatttccttttatttaatagTGACTGGAGATATTTTTGTGTCTCTAAACTAATATTTCCCATCCAGAGTCATTAATGGTTCACT-TGGAAGACAAACTAAAAATTTACCTTGCTCATAAATGTTTAGAGAA-AAGCCACTTCATACTCCAGATCAGGTAATCACAAGTGTACT-ATGGAGATGATGGATTTGAGGGTTAT--GCT-------AAATATGAATTCAGCGTAACAACCACATGAGCAGCATC-----ACCACTAGGTGAGACCATGTATGAACTTGTCCCTCACAGCtctgctggcccctcctctctggaCTGGTGAAAGGGGGTGCACAGTTGTCACATagccacctcaaaaaaaaaagccaggctggttttgatttttgagtcCTCTA----TTTTATAACTTATGCCACTCTAAAAGAATCTAAACTCTATGATAGTAGAAGCTTATGTAATGTTTAGAATGAGAGCACATTTTGTATTTCAGTGGTTTAAGTGTAATGTCAATGCATAGTAATTTTGAATTATACAACTAATAA-CCAGCTGTCTTGCTGTGAACCTATCCCTTGCAACTCTGAGTGTGATG-GAGGGTAGGAGTTTCCTCCTCGGT--TAGAAGGGACACAGAAGG

a score=5208
s chr3           100274342 152 + 160039680 ttcatattgttgttctcctataggcttTCTAGTCTTCTTG----------------TCTTATCTTCTCAGACTGAGACAATGAAAATGTCTCCACTTACTTAAGGTATACCTGAATTTTTTCTGTTGAAGCAATGGTCCCTTTCTCCATGGGATGGATAATTATCACA
s HiC_scaffold_1 110231475 167 - 233722169 TTCCTTTAGTTGTCCTCTTTTTGTACCAGTAGCCTCCTTGCCTTTATCTTCCTATATCTTCTTTTCTCAGATCAAGACTGTAGGAAAGTCTT-ACTTGCCTAAATTGTACCTGGTTCTTTTCTACTGAAATGTTGATCCTTTCTTTCTTGGGATGAATAATTGTTACA

a score=15536
s chr3           100278580 459 + 160039680 TTCACACAGTTTT-TATCTTGTCTTATTAGATGAAGCTAAGTTCATTAAAAAAGATGACATGTACTGTTTCCAGAACTTATCAAGCCTTAGATCTGGGGGATTGGGCAGATTT--ATCCACAAATGACACAGATTGGGATCTAAACACACAGCATCCTTAATAGCATATTTTGTGCTACTAATGAGGCATGAAATACATTCTAAAACTGTAATGGCCcaacaaatggtgatgagaaaactgggtatctacatataaatggatgacactg---gtgcatagtgaagccacatataaacatcaaattcacctgcaccaaagaaataaatataagagctaaaactagaaacctttaagagaaaaacaagagcaaagcttcattgacattgaatttgacaatggtcttatagaaattatgtcaaagccacaagcaacaaaag---aaaaacaa--ataaattggactttatcaa
s HiC_scaffold_1 110235340 459 - 233722169 TTTACATAGTTCTGTGTCTT----TACTAAATGATTCTAATCC----AGAAAAGACGAAATTTACTattcctcaaagtgaaaaatcCTTAGACTTGATACACTTGtcaaatttttatacataaaGCACACAGATTATGATATAAACACACTATGTTCTGAATGAAGCATTCTGTGCTTCAAATGAGGCAAAAATTACAATCTAAAGTTTTAATGGTTCAACAAATGCTGCTGAGAAAACTAAGTAGctacattcaaaagaatgaaactacTCATACGCAGTTACAGCACATGCAAAC-TTAACTACAATTCTGTGAAAGACATAGGTATAAGAGTTAAAACTAGAAAACTCTTATA-AAGCAGAGGGGGAAATTTTTATAG-CATTGAATTTGACAATGATTTTATGGCTATAACATCAAAAACACAGGCAGCAAGAGGACAAAGATAATTGTTAAttggattttataaa

a score=22674
s chr3           100322378 547 + 160039680 AAAACAAATGTGCCTTATGTGCCC---GGCCTGTGGCTTGGCAGTGGTTGACCGAGGGCAACAGAATAAAGAATCCCCAAACCCATAAAAGCATC-CTCCAGCAAAAAAACAAAGAAAAAATTTGCATGTCGTCTTTGTTAATTAAATCCATCTTGTCCACGAGAGCTCCAA-GCATCTCTGCCAGAGGGAAATAGCAAACACATGGTCTCAGGCCACTCTTATCCCTAGGAAAGCTCACAAGAG-----AGCCAAAACAGCAAATCTGTTTCCGAGAAAGTTACCCTATGGGCACTACCCTCTTCCCCTGGCTCCGAATTATGCTTCTGGAACTTTCTGCT---GGAAACTGAGGCAGCTATGGAGCAGTCCAAACTAGAGTGAGAAGATGGGTTTGGTG---TGAGAGCGATCTAGGCTCATTCCTCTCAGGACTACCACAGGAGTAGGGGAAATTCTAAGAAAACAAGA---TGTTCTTAGACACATGGTTTTTAGGCACACCAGGCCAACAAGGAGGCATCAGTCCAAAGGAACAGACTTCCTAGGTTCAGTCAGGGTGGAG
s HiC_scaffold_1 110252674 553 - 233722169 AAGACAAAACTTCTTT-TGTGCCCTCTGTTCTGGGGGTTGGCAATTGTAGACCAagtataaaagaataaagaatccCCAAACCTATAAAATCTCCTCTCCAGCATA----CAACAAAACACTTTGCCTGTCGTCCTCATTAATGAAACCCATCTTGTCTATAAGAGTTCTTGTGTATCTCTGCCAGAGGGAAATATCAAACACATGCTCTCATGCCATTTCTACTCCCAGGAAAGCTTGGAAGAGACAATAGCAGAAAAAACAAACCTATTCCCAGGAAAGTTCATCTTTTGGCATT-TGTTCTTCACCTGGCTCGGGATTCTGTTTTAGGGATTCTCTGCTTCAGGAAAATGAGACAGCTGTGGGACAACCCCAGTTAGAGTGACCAGAT-GGTTTGGTATGCTGAGAacattctaggcatattcctccAAGAATTACCACAGAAACAGGGACAGTTCCAGGAAAACAAGGAGTTGTTTCTATGTGCATAG--TTTGGGCATAGTAGGCTAGCGGAAAGCCATTTGTCACTAAGAGCAGACTTGCTGG----AGTCAGGGTAGAG

a score=6191
s chr3           100324532 352 + 160039680 CCTTAAATAGAGTTGCTAAATCCAATGTCCTTTCTTTCTGGAC--------------TAAGGGTTACTGCCTTGCCTATAAGTAGCAGAAGTGTAGCAAAAGAAACTAAG--CATACAGATATTTTTTTCATTGCTAAAGGCTTCAATATTGGCTAAGTCCACAGAAGCCTTGCATTCTCTGGGCTTTTTAGATTCccccctcctcctcccttcccccgctctcttcccctccctctTTCTGGCAGCTTTCTCTTTTCATGGTTATGGGTGACTATAAACAGCAGCCACTGTCCTATTTCTAATTTGCTCCACTTTCTTTGGTGTGATTTGAAAATCTAATAATCTTACATGATAAGTAGGATTCATT
s HiC_scaffold_1 110255602 326 - 233722169 ccctaaATATCAGTGCTGgatgtaat----tttctttctgaatCAAGCACATCATTATAAGTTTTATTGTCTTGCTCTTACATAGTATGATTCCACCAAAGGATGCTAAAACTATATAGAGTTATTTTCCCTTAT--ACTTTCTCAGAAACTGTTAG--CTATAAACGATTTGGGGTTTGAGTACCTTTTAGGT------------------------GTTCTGT-------CTTTTCAATAGCAGCAATCACTCTTCATAGTTATCACTGACTG--AGTGGTAACCACTGCCCTACTTCTGATTTGTTCTTCTTGTTGTGATGTGAGTTGAAAGGTAAATGATCTTAGATGA-AATTAGGATTCATT

a score=50198
s chr3           100331770 1683 + 160039680 TTCATGACATCATTTTTGGCCTCTCTGTGCCTTTT--CTTATTTCTGT--------TTGTTTGTTTTTAATTTCTAGATGTTTCTTGTTTTTAATTTCTTTCCCTTTTCAATATTCCAGACATTTAAAAGCAACTAAATAAGTGTCTTTAAATGTGTAGAGTTAATATTAATATCATGATATACAGTGGTCTTTTCTATTTGTTTGTTAAGCAAATAATGTTAAAAACCTAAACCTAGAA-AGTTACAGACAATGTGGATTAAA----------TGCTATA---------AGCTTCATCCCCATTGAGGGTTCAATTTACCATGAAGATGGCAGAGACTTGAGTCTTTAAAAACTGA-------------------AAAGAGTGTCAGAGTATTTAAAATGGAGTTGAATATTCCAGGGCAGAGTGTGAGAAGATGCCACTAACGTGGGGTTAATGGTGTTACTGTCCAAAAAGGAAAGCAAAAGAAAGCTAATTGTAGAAATTACTGGCCAATAACTTGGATAGTCATAGTAATAAGGCAGATGTTAACACTGAAGATCCATCAACATCTGGGAAGGATAAAGTCACGAAGGATTTATAGGAAGAAGTGAGTTCAAGAGACT--GTAAA-GAGAAAAGCAGAGCAAAGCCAGGTCTTTAGTAAAGGATTTGGAACTTGGGTAAAGGTTTTTGTTCAGCCTGGCATGCCATTTCTACTCTATGGCCAGCCCAGATTGCCTTGGAAAAGAACCTGGTCACATGAACTTGCTTGCAGGCTGGGAGGTCATAAATAAAAGATAATTATATGAGAACACAGAAACAGATCCAAGGAGGAGCATGGGGGGCTAAGGGCACTTCCCCAGAGAGCAGGGTCCAGTCTGGTTTTGTTTAATGTCTTTGCTAAAGATTTGAAAGCAAGAACAAACAAATGTCAAGAAAAATGCACAAAGC-CATTAGCTAGTGACAA---GCACACATCACTAACAA--GCTTGCTCAACAAGACTGAAGCAAGAGCATAGGACCACTGGGAATAACCTAGGCCAAAGTAGCCTAGGATGATGAGTGGTTATATATTAAA-AACTTAGTCTTTATTTGAAGGTGGGTCGAGAAAG-GCTGGCTGTTGGCTAGACAGGATAGGTAAGAAGAAAGACCAAAGTGATGGTGGGAAATAAATAATGCTTAATAACATTAATAACACTGGGTGGCAATTAGGAAAGTAAAGAACACAGGTGCT--GTTCTGAGGTTTG-----TATATGCCTGTGGTTCAAGCCATGTGAAATGATAACAAGCAATTCACTGCAGGT--GAAAGAAAAGGAA-------AGGAGTGTGCCAATGGGGCTTCGGATGTTTGTGCAGAATATTCAAGTCCTAAAGGAGGCAGTTCTGTGTATTCCTGAATCAAACTTCTAGAACATTACCAGTAGAGTACCACCTAGCACATTATCTCAGGA-AGAGCAGA-CACCAGAGACTGGAGGACAGCTACAAGAAGCCC----TGGAATTCTCAGTAAGTCCATAATTACTGAGTGAAAACGAGCTGAAGATTGCTGCTTAGGGCCCTTCCAGCTTTCAGATTTGTGGTCTCCATGAATGGAAGAAAAAGTCAGAGCCAGGAGCTTCTAAGTATTTAAGCAAATTGACAACTATCCCTGCCTCTCCTCTAGGTGGGCTTGCCTCATCTCTGCCTGGGCTAGGAGAAATGTGGTACATCCACTACCCGGTGTAATTCTGCCACTTGTGTCTTGCTT
s HiC_scaffold_1 110257034 1667 - 233722169 TTTGTAAcatcttttctgtcttctccatgttgttttgcctatttctatattttattttgttctgttttattgttggagtgtttttt-cctttgttttctt--------ctgtgttctagATATCTAAATG--AGTAGAGAAGTGTCTTCTAG--------------ATTAATACCCTGTTATG--GTGAtcccttctcttt-----ttatttgaataaGGCTTAAAAacaattcacaaaagaaaaactggagatGTGAATTGAAGCGGCAAAAGTTCCAAAGTCAGGTAAAGTTGCATCTCCTTTCATGCTTAAATCAGACACCAAGAATTTGGTGACTTGAG-CGTCACATCCTGAGGCAAagcacagagaaattaaaaatcacaagagAATTAAAAAGGGAGTGAAAAA--CCAGGGCAAAGTGTGAAAAAATGCCATTAATATGGTGTTAATGGTTTTAATGTTcaagaaggaaagcaaaagaaagctAATTGTGGAAATTACTGGCCAGTAAATTGGATagtcacagtaataaaacagATGCTAACAATGAAAATCCATCAACATCTGGAAAGGATAAAGTCACAAAGGATTTATGGAAAGAAGTGAGTTCAAGAAACTCTGTAGATGAGAAAAACAGCATGAAGCCAGGTCTTTAGTAAAGGATTTGGAACTTGGGTAAAGGACTTTGTTCAGCTTGCCACGCCACTTCTATTCAAAAGCCAGCTTCAGTTGCCTTGGAAGAGAACATGGTCACATGGAATCAACAGCGGGCTGGGAGGTCATAAGTAAAGGATAATGATATAAGAACCCAGAAACAACTACAGTGAAGGGAAT-GGGGCCTGAGGACAGTTTCTCTGAGAGCCAAGTACAATCTGATTTTATTTAAGATCTTTACTAATGATTAGGAAGCAGG----ACCAAATGCCAAG-AAAATGTGCAAAGCACATCAAATAAAGACAACCCACACACATCACCCAGAAATGTTACCCCAACAGGACTGGGGCAACTGtggaaagaaactagaaattgtATTAATCAAAGTAGCCTacgaaaatgatt--ttaaattttaagcaaaCTAACCCATCTTCAAGGTTGACTGGAGGAAGTGGTGGTTGTTGGAAGGGTAGAATAAGAAATAAGGCTGGCCAAAGCCAGTCCCCggggaaaataatgtttaataac----GTAGCA-----TGGTAACGAGGAACTCCAGCAGATCTGACACTCAAACCTGAGGCATGGTGAATGTGTGACTGAGACtcaataaatggaaaatgaaaactgaCCCCTTTATTCAGGTTAGAAGGAGATGAAATAAGAGTAGGAGTGTGAAGACTGGACATTAGCTATTTATCTAGAACATTCTAGTCTT-AGGGATGTACATCTATGCAGTTTCAGCTTAGACTTCTGGCATGTTTGAAGTTCTGT--CATCTAGTCCATT-TCCCAGCACACAGCAGGTCCTCAATGATTGTAGGCCA--------AAACTCCTTGTGGAATTCTTATGATATCTACACATGTTGAGTG-AAATGTGGTAACGATTA----------------CAGCTTTGATATTTGTGAATTCTGTGATTAGAAGAGAAAGTCAGAACCAGGTTTATCTAGGTATTTCAGCAAACTGACCACTGTCCCTACTGCTCTGAGGCTCAGATCTGCCCTGTCCCTACCTGTGAAAATGAAACTATGGtgc-----------------attctgtttcttgtttctggcCT

a score=19547
s chr3           100356702 791 + 160039680 cccagctttttcctcatctcctaagttcctgccaccttcccatggctctaagccttcaacacatgaatttgaggacacatttaagaAACAATGACAAGACATAAA-TTGTTCTGAAAACTCTCAGTGAGTCAGGACTCTTTTCTCTGAAAACTTCTTTCTTGGAAGTGACCGGGGAAGTTGAAGTTGAAGTTCTTTTTGT------CTTTCAAGTCACCAATTCATGCTCCAGCAAAAGTAATTGTGGTGGTTTCTTGACTCTTTGCAGGACCACTGAGTGGACTGTGCCCC-------------------------------------AGACTGGGCTATGCAGGCAGCCATTATCCCGAGAAGTAAGGAAAAATGGGAGCTAGAGAAAGGATTGGATATTCTGAGTCTTGCTGCTTGGCCTCTGGATTTGGAGTGAGGTAGGGTGGAGAGAG---------------------------AGCCACTCCCCAGTTTGCTGAACCCAGATGGTGGGTCCGTGAGAAACACTTAATTGCCCACAGAGAGGACATATAACTTTGGCAGAAGATGCAAGCTAATCAGAAGCAGCCCCCAACCTCCTCCCTTCTCCCTGCTGTAAATTCAGCTTGATGGGTACAAGAAGAAATTCTAGCACTCCCCAGAGTGCCTAGAATCACCAGCCAGGATG-CCAGCCTCAATTATGAGTTATTCAGAAGCAACCC--AGAATTTTTAATTTGGAAGAT-AAGAAGGTCCAGCCTTGCATGGCCAGGCCCCTCCAGGAACTGTTACCTAGATAAGCTTTCTTTAC--TTCCAGCCAGAAACCATTCTTCCTTCATGTTAATAGCCTTTATGTAGGGGAT
s HiC_scaffold_1 110264255 745 - 233722169 cCCAGCTTTGTTGCCATCGCCTA--TTGTTG------------GTCTCTA-----TTTACACGTTGGTCCAGTGAAACACGCAGTAAACAACAGCAGGATATGAGCTTGTTCTATAAA-TGTGAGCGAGTCAGGG------TCTCTGAGAACTTCTTCCCTGGGAGTGGCTGGG-------AAGTCAATGCTACTTTAATGGAGGACTGTCAGT---CCCACCCGAGGCCCAGCACAG------------------TGCCTCT---AGAGACCACTGGGAGGTCTGTGTCCCCCAACCTAGCTTTACCTGCTGAGATGCGGAGCTGGGAGGACTGGG-TGTGCA--CAGCCAT---CCCAAGGAAGGGTGAAAGGTGAACGGTACAGGATGgat-atattttctgaattttgcaGCCTTGCTCCTGCACTGGAAGTG-GGTAGGGTGGAGacaggggggagggggaggagagagaaagagaagccacTCCCTACTTTGCTAAGCCCAGATGCGGAATCCGTGAGAAACATTTAATTGTCCACAAAGAGGACATCTCACATTGGCAGAAGATGCAGGCTAATCAGAAGCAGCCCCCGG--------CTTCTTTCTGCTGTGAACTCAGCTTGATGGGTACAAAAAGAGGTTCCAGGGCTCT-------------GATCTCCAGCCACACTGCCCAGCCTGAAGTGTGGAATATTCAGAAACAACCCAGAGAATTTTTCACTTGGGAGGTGGAGAGGGTATTGCCTAGTCTG------------------------------------TTCTCCACTGTTCCATCCAGAAAACTGTCTTTCTTGGT-TCCACAGCCTTCTTGTTGGGAAt

a score=21250
s chr3           100359613 2654 + 160039680 TCTAAACA--GTTTTAGAAAGCAGTAACTTGGTTATTATGTCAA-----------TTTATCTTTTTATCCCCGAAAAGCTGAACACCTACA--AAAGACAGCATTTCTAAGGGTATGAGTAGTGTTCCCATCATTGGGCAAGTTTGGGCTCAGAAGGCACCCAGGAGACATTTGACCCCTTTGAATGAAA-----CTGAATTAAAGTAATAGACCTTGAAAATAAATAGCATTTTAGAAACTGGTAAGAAGTGGCCTTTCTGGATTGTCCACCAGAGAGACCCTTGGAAAGCAGGTTGC---------TGGCCTGAGAATTGTGTCTATCCCGAGGGGCTCCAGAGTTAAGTTAAT-GTGGTCTC----------------TGGGTCTGT-----------------------CTGGAT--TCCCACAC---------CTCCCCCTTAACATA------CAGC--------CACGCATAGCCTGGAAGAGCAGTAAGTCGTGGGCACACTAAAGAATCTCTGACGATGTCATTGTATTCAGTGGGACCAACAGCAGGAAGATGCCTTCCTCCAGCATagtggttctcaatttgtagactgtgaccccttttgggggtcaaatgactctttcacagaggccacctaagaccattggaaaacacagatatttacattctgactcataacaatagcaaaattatagctatgaagtagagacaaaaataatttcgtggttgggagtcaccacacatgaggaactaactgtactaaagggtcacagcattaggaaggctgagagccactgTTAGCACTTCTGAAAGACAGCTCACGCAGCTCCCTGGCATGTCTTTCCCTCACTATAAACAGATTCTCAGGTGTCTCAATGTTCTCAAAAGCTTCCCCACTCAACACAGCTGCTCCTTAAACCTCCACCGTCCTTCACTGTCAAGCCCCTCCACCCGCAGAGAGCCATCTACGTCT-TGCCCGTACATTCTTCTCTGCCCCTCCATTCTCTGCAATGTGGCTCAGGGCTCAAATAGTCCTTCAACTGGATCAAACAGACTGGATCAAACTGGTCCTCCTGACTGGATCAA-ACAGACTCTCACAGCCCCACAGACGCTATCAGCTTCTTGCTTGAAACTTTG-----TCTTGATTTTTCATGACAGCCCCACTGGTATGATTGATTCTTCCTTCTTCAGCAGGTTCCTCTTGGCACCTTTTTTGGTTGGCTCTTGTGGAAGGCCTCCAT---CTCCTCATCTTTCCTCATCTGCTGTCCCTGCATCGTCTACTCTTCTGTCCAGTT-----CTATCCTTCATGTTCTCATTATGAGCCCTGGGTCCTTCCACTTGTCTCCTATATCCGA------GTAAA----------------CCCCTCGAAGGACCCAAGTCCATTCCTGTCCTCC--CACCCTGCTCT-----GGATTGTCTCTCATCTTTTTATGTCTCTGCCATGCATCACCACTA--------TGTGCCTTTGATCTAAATGTTA-AAGGTTCATCACACATGGTGCCACGGATCTGGAATATAAGCTACGTCATTTCATCCCTCCAATTTGAAATCTTTTATGGTATCCACTGCCTA-AGAGTA-CATCCAAGCTCATTACCAAGGATCATACTCAAGGCTCTCTTTCAACAGGGCTCAACATCGCCTGGTCCTCACTTTGTTTCTCCAGCAG-ATATTCCTGCATTCCTTAATCCAAAGTCAGTTTTAGGAAAAGTCTTAAATTAAGGGCTGTGAATATGGCTCAATCAGTGTTATGTTAACAAGCcacacaaggtctccatacacatgagcacatatgcccatacctgtatacacatgcacctacacacacataaacatgtgcacacaggtatatgtatttgagtgTACACCCATGAGTGGCTCTTTTAGACAGTGAGGGGGACAGGGAAGCTCATCTGATTCATCCATTCCTGTGATCTGTCCAAGGAGGTCTTCCTCTGTTTGTGGTATAAGcacacacagacacacagacacacagacacacagacacacacatacacacacacacaaacacacacacCACTTTAAAGTTCTACTCATACATTCTCTTTCTCCTGAAAACAGccacatttttttaacctgataactc-catgcatacttctaaactaa---gttccttccaccagggagctttctctgtccctttctgatctggccaggtgtctctcagaagttgtaaatagctacctgtgcatgctctcaccttggcagtaatgtagctgtgttgaaactacatacttacactacatcctcatacactaa--attttgtgga------------ttcaggaaaggggtcTTCTAAAAGGTTTGTCTTGC-----TGCATAGATTATTGAGCTCAGAAGCGGGTAAGTGTTTAAGAATGC-TGTAGAGAGCCCACACCTCCAGCAGCACTGCTGTGATTTCCTACTGAATTAGCACA----GTGCTATATGGGATTTTATTTTTGAAAACCACTACTCTTTGGAATACTACATGATACTCCCAGCATCGCTATCCCTTGTGTTCATAACTTGTGAAATAATACAGCCACTGCCTCCCAAAATGCTTCCCCTTTGGGTACCACTAATGCATTCTTTGATGTTGGAAGTGAAGGCCAG--------GGCTTTGCTAA------CTCATTTAACACAATTCCAGTGAAAGAGGCCAGCCCCTATCTTTTTAGCAGAAAGGAAGGTTCAGCAAGCTACTTAACACGCCCCACCCCTAGCCATGCCCAGTGTCTAAACTTCAGACCTACCCTTTATAGGTAACTAAGAAAAT
s HiC_scaffold_1 110267612 2260 - 233722169 TTTAAACATAGTTT---AAAACACTAAATTCATTGTTAAATTAACTGCTCTTGTCTTTATCTTCAGTTCCCAGGAAAAGTGATTGCCAAAGGCAAAGACAAACTTTTTTAGGGCAGGAACTGTATACCTATCAGCAG-CAGCTTGTTACACAGTatgcactcaataaatatttgactt-tttgaaTGGAATTGCACTGAATTAACATGACAAGTCTTTAAGCCAACTGCTACTTTGGAAGTTGGGGAGAAGTGGCCTTTCCTAACTTTGCCCCAAAGAGGCA--TAGGAAGGAAGCTATAAAGACGTATGACCTGGCAATCAAAT-TATCTTCAAGGATTCTAGAGTTAGAACACTTATGATCTAAGTGAGGGGCTAAAGATGGGTGAGTTGTCAGTAGCCTTTACTTCAGAACTGGATGATTCAACTCATGGTTTAGCTTCAGTTTACCAGAATGTTCCAGTGGTTAGTATATACAAAtaccaaaaaagtagtaag----aatctTATTGAAGAATCTTAAAAGATGTCATGTTATTTAGCTAGGCTGACCCAAGGAAGGTG---TCCTGTAGCAT--------------------CTCTGACAGTTT-------------GCTCCTTTGACAG--------------------------------TTTGCTCTCTGGC--ATGACCATTGCCAGA----------------------------------------------------------GGACTTTCT------------------------------------TACATTCAGTCTATCTGCAAC----CTCTCTCTGTCTCATGGT---TCTTTGCTTTGCCATATAAATGTGCTCACTTCTCTTGACGTCCTTAAAAGTTTCTCC-CTCAATCCAGCATCTCTTTATGTCTGTCCTCCCTTTCACAACCAAGCGCCTTGA------GAGAGCTGCTTCTGTTTCTACTTCCTCATCTCTCACTCTCCCTCAGCCTATCACAATCTGGCTTATGTCCTCACCACTCAATCAAC----------------------ACCG---CTATTGGCTGGATCCATGCAAAGTCTAACATTT----AAATACTGAGGGCTTCTTACTTGAAACTCTTGCCTTTCTTGAGGCTTCATGATAACTCTCTCTTGAT--TTGCGTTTTTCTTCCTTGGATATCTCTTCTCCATTCCCTTGTTGGTCTGATCTTCTAACAGTTCTCCATATTCTTTTCATGTTACCCCATCTACTTTCCCT----CATCCATTACTTTATTTAACTACTAGCAGTGTCTAATATTATCA-------------GCACTTTCAATTATCTTCTGCATCCAATGTCTAGCAAAATAATCTCATCCCTCCCTCCTCAAGGCCCCCAGATTCACCCCTCTTCTCCATCCTCTTGCTCCTTCTGAGTTTATGGCTCGACTCT--AGTTTTCTGCCA-ACATCctcaccactgatctttctgttTTCAACCTTAATTCTATAAAATTTATGTCATATAATGTCATGGATCTAAAATATAAATCGTATGGTCTTGTTCCCACAATGTGAG-TTTTCTGTGATGTCCACTGCCTACGGAATAGCATCCAAGATCTTTAGTCCGGCTCTTATACAAGGATATTCTTATACAAGGTCAAACATTACCAAaccctt-ttttatctctctaGCTTCATCTCCATTCATTCCTTAATCTGAATTCAGATTT-GGAAGAATGCTAAA----------------------------------------------------------------------------------------------------------------------GTGC---------------TTTGAGATTTCAC--------------------------------------------------------------------------------------------TGTGGTCTTTGCACACAT---------------------------------------------------------------------------------TATCTTCTTT------AACAGAACCTC-TTTTTTTAACCTGGTAACTTATACACATCCTTCAAAATTTAACTGTTACCTCCAGTAGGGACCTTTCCCTGACCCTTCCCAATCTGCCTAAGTGTCTCTCACAAATTTTCCACAGCAACATGTGCAGGCTTCTATCTAAGCAGTGTTGAAACTGTACTGAAATTGCACACTTGATGGTCATCTATACAAGCCTATGGTTTTGTGAGCTTATGGGCTCCTTTAGGATAAGGGCCTTTGAAAAATTGTGTTTCCTCTGTGTGTACAAA-----GAACTTAGAAGGTAGCAAGTGCTTAACAATACATGGAGTAAATTTATACCAACCATAATACTCCTGTCACTTTCTTGTTAATGGATGTAATTTGTGGT-TATAGAATCTTACCCT-GAAAGTCAACACCATTTGGAATACTATCTGATATGCTCAGCATACCTGTGCCTTGTGAGTTTAACTTGGGAAATGACATAA--ACTTCCTCCTA----------TTTTCATAGACCAGT----TCTTCTTTGATGGTGAAAGTGAGGCTGAGTGGATTATTGATTTGCTGATATATTCATGTTTAACACAAT-----AAAAACATATCAGATGCTCTCTTTTT-GCAGAATGAAATGTCCACTAGAAAATGTGGAATATATACCTCTCAATCATGTCCAGTGTCTCAGTTTCTGATTTAGTCTTGATGTATTGTTACAGAAAT

a score=44575
s chr3           100362224 2758 + 160039680 TGTCTAAACTTCAGACCTACCCTTTATAGGTAACTAAGAAAATATCTT---TGTCCATTTTCTAGTCTGGGACTAAAATGTAT-------------GTCTGGAACATCTCCTCCTC--------------TCTCCCTCCA---GAATCACAAGATAATGTTCTGCTCCTATGTC---TATCAAC--------CTCAAAGTCACT------GCTGCTTTCCAAAAAGCTG------CCCCCAGAGGTGATGCTCTGACATCCGCATAGCTCTGCTCCCCCTTCT---AAGTTTTCTACATGGGGGCGAGAGCTGGTGGCCAACAGAGAAACTCTGGAGGTCAACATTCTCATTTCCCTAGTGAGAAACATACA-----------AGCTAAAATAACCTGTCTAATGTGAGTGATATTAG----caacatttactgtgtgcttactgt---atgcactctctatgcatttctatagctaatcttggcaacagctctatggag-gtgcattaatattttactccaAGTTCAGTGGATTCAAAGTGAAAGATGTTACGTGCTTAATAACTCTTTGGAATATTCATGATAGGATGAACTTGGttgtccaaagtcacacatctgctgagagcaaacaaggattccatctacagaacctgactccagaTCTGGGTGACATCAGAGCTGTGTGACATTGGGTCTGTGTGACGTCATGGCTGCGTGACGTCAGAGATGTGTGATGTAATCACTAAGTCCTGTCACTC-----TACAAGCTTTCTTACCTTTCAGTTGCCTAGAAATATATTTCTGATAGCTTGA-----GATGGTTATGTGCTT--------------TAGCCATTCATTAAAT------------------ATATATATTGC-----------AAGTGAAAGCCCATTTTAAACTTTAAGGATGATTATGTAA-TTCAACTGTAAATA-----TGGGTTTTCATGTACTGATGTTCTCAGAACAAGACTCACCTGGGTTGAAAAGCGAACAGTCCAGAAGATAGCAAACACCATTTGGAATCAAGTGGAAAATTCCCCCATGGCTGTGGAGTTCAGTTTAAAAGGGGCCGATTAAGGAAA-CGGGGAGAGCAAA----------------------CTCTGTTTGCTTAAACCAAACAGTTGCCATTTGTGAACAGAAGCCAAACACCTGTTGCTTGGGAAAGGAAATTTTCAGCCCTGGCATTG-TAGAGTTATTACTGATAAGAACTGGCCATGAACAACTTCCAAAATTGTCATTTGGGGCC-AAAGTTTATCTTCCTCTCTGTTTACTGTCTTTATCTACGTGTGTACCTTAGTGGAACATATAGCTTGTGACTCCAGCACAGGACTCATTTGCT-TCTTCATTCCTGGACAGCACACTGACCCATGAGTGGTTCTTTTAG----ACAGTGAGAGGGACAGGGGAACTCACCTGGTTCATCCATTCCTGTGATCTGCCCAGGGGGTCTTCCTCTTTTTG---TGGTTCAA---------------------AGAGGTTACTTAGCAAACAGC-TTTTTTGCATA--------AATGTCCAGCCT------CAT---------ACCAA---------------------GTACTATTACCCAGTTAAATCCACTTTCTTAAAGGGCCACTCAAACTGCACCCTCATTATAACTAGGTAGGGTCATGGGTGTGCGGCTTCTTGCCTGGAAACCGATTCTCATC--------------TCTGATG---------ACTCTCTTACCCGTATATGGCACCCCATCCTCTGGTTCTCTCCCAGCTCTAGACTGTGGTTCGTTGAATCAGCAGGCTGAGTTAAAAGTCTGGACTTTTTAACAAGCTTTCTAGATAAGGTCATCAGCTGTTCTTGGTTGCTTAGGGATGAGAGTTTCTTAGGTTTGAGATATTCATGGGCCGAACATTTAAGAAGCTTTGGGAAAACAGAGATGAGCTGGTCAGCCTATTCCTG-----TACTGAGTGACTTCGGGGATTGGTAGACT--AACCCACAGGCCAAGCCAGTTCACTGCCTGGTTTTGCAAGTAAAGTGTTACTGGGACCTGAT---------CATTGCTTTACTCTTAGGCTGTGGCTACTTTTGTGCTACAGTAGCA-------------ATTCAACAGA-CACATGACTCAGGAGACCTGCAGTGTAGATTGCCTTGTTCTTTACTGAAGACATTAGTAATTCCAAATCAAACCCCACGACCCGTTCCCTCCAGCA------ctgccttctgctctaaattcaccttttctctttcctcactcagagttcaaggtactcttggctttttatagttccagagaaatgccaagagtgctttctttcatttgcttctgtttttcttatgctgctccctcttctcacaatggctcctctccactccgcttggc----ttcctttccttggcccaatggaacacaatgcagggaggcttctctccaggaagtctttcttggctctgtctcca-------ctct----gcacccagtttgaatgccactggagcctccaggtcaaatccccatccctgaccttgccacactctgtgctagagtggctcatttgctggtgagttgctcccaccaggcactgagatctgt----gagatcactgtaatgtattacatctatgctcccatcctctg--tgactgccagcatggaggaaagccaggaagtatctgctgaattatgaatATGTGAAGCAAGGGTGAGACATGCCCTGGGGTATTGATCTGTTCATCTTAGCTTGAGATTCCTATCCAGGACTCATAGCCCCCTTGCTTCTGGAAATGGTCCCATTTTGAGTATACT-------GATAAGCTGTGAAGTTACTCTTAGCCTAGTTAGCTC------TGGCCAGGGGTAGGG--------------------GAAGACCTGGGTAATGTTCTATTTCCTCCAGTGTGGAAGGAAACACATGGTGCATACTGAGTGGGAAGGAGGCTTACTTGAGCATATTTTTCTGTGTCACAGTAAGGGTTATAAAAAAAAATCTAGAGG
s HiC_scaffold_1 110270291 2796 - 233722169 tgtgtaaaattttaattt--cctttccgTGTAACTAGAAAAATATCATCTATGTCCATCTTCTGAATAGGAAATAAGTGGTATCCCCATAGTAGCTTTCCAGTTTATCTCTTCTTCATTGTTAAATAAGGGTTCCATTCATAGGCACCATATGAAAATGTTAGGTTCATATGTCACATATGAACATGTTACATTCACATTCATGTGTCTGGATGCCTCTCATGCAGCTATTTTTCCTCCTGGTTGTGGTGAT-----------ATTGCCCTGTCCTTTCTTCTTGTGAGTTTTCTACATGAGATATAGAATTAGTAATTGACAGAGAAACTTTAGAGGTCAAC-------TCCTTCTAgccaaaaaaatatatagaccTACAGAGATAAAATAAATTGCCTTACATGAGTAGTATTAAGAACTAACATTTATTATGTGCTTACTATGCTAAGCACTTTATACACATTAACTTGTATAATTCTCACCAAACCACACAGGAGAGTGTACTACTAGT--ATTTCTAGCTCA--------CAGGTGAAGAATTTGA--GGCTTAAGGA----------------------GATGAATTCATGTGCCCCAAATCACAAATC---------CAAGCCTGGACTCC---------------------------------------------------------------CAGCATGGCAGTGTGACTCCAGGGTCATCTCATCCAAGTGCCATGCACTGCTTCCCACAGCCAGAAGGATacttattttcccatttctta-aaatgtcttt----tatctTCATTCCCGATGGTTCCTTATTTAGCAATAGGTAGAGTTGCTGTTCAATTAATTAAGGAGcctaataatttataaataaaaccaaCAGTGAATAAGAGAGAACCTATTTAGAACATCAAggatttttaagtaaatgaaattatCCATACTCTATGAGTGTTTATATGCTGATGTTTTTAGAACAAGACATGCCTCTTTTGGAAC-TAAACAGTCCACAAGATAGGAAACACTATATGTAACTAAGTGGAAAATTTCCTCATGGCTACAAAGCTAAATTAAAAAGGGACTGattaaagaaagcaaagagagcACAATTAGTCCCTTTAAAGCAAACTCTTTGTTTGCCTAAGTCAAACAGTGCTCATTTCTGAACAGAAGTCAAACACCTGTTGCTTCGAAAGGAAAATTTTTAG--CTGGCTTTGTTAGAGCTATTGCTGATAAGGGCTGACCATGAAGTGTTTCAAAACTTGACATATGGGCCCAAAAGTTTATCttgccctct--------tttttttcc---------ccctagttgAAAATATAGCTTGGAACTCTAGTCCAGGCCTCGCCCCCTCTCTTCATTTCTAGAGGAGGCACTGATTGGAGTGTGGCTTCTCCAGTCAAACGGTAAGGGAAAGTGAGGAAGAGGCTCCTTTTGTCTCTTTCCGCCTGCGGCCTAAG----CTCCCCCAAATTGGATTGGTTGAACTCTTCTCTGCCCTAGTGGGCAGTGGTTACTTACTGAAAAACACTTTTTTCATAAAGCAGGTAATGCCCAGcctgaaaaacatttttcagaaacCAAGAAATGCTCAGCCTGAGTTGGGTGCTTCTGCGCAGCTACATCTATTCTCACAAGTGTTCAC-----CTCTTCTCATGTCATCAC-------GGACAGGGG------------TACCTGGACACATATTCCTGTTGTGAGAATGAAGAATCTGACACAGGAATCCATTCTCCTGCTCAGTGGTGATGCCCCATCACCTCTAACTTTTCTAATGCCAGTTTGTCATTCACTG-----------------AAGAGCCCATAGTTTTTAACAAGTTCCCTAGGTTGAGTGATT-TTTGTCCAGGGCTACATGGGACTAAGGGGCTTCCAAAACTGTAGGATTTTAGCACTCAAAATTGCAGAACTCTTAGGCAAGTTGAAAAGTGTTGTCTAGTCTATTTCTGGGTGATTGTGATTTATAGCAGGGGTCTTCAGATTTCAGTGCACAGGCCACATTGCCTCTctacctgtttttgtaaataaagttttattggaatgtAATTGGAATGTGCACTGATTTACATTTTTGATATGGCTCCTACTATGATATAGAAGTAGAATAGAACAGTTGTTCCAGAGATCACATGAACCAAGATACCTAAGCAATATATTG-TTTAtacctttataaaaatatt-ttgactcCAAGTACAATCCAGTAATCCAACCTCCCCAGTATGACAGTTGCCTTCCTCTCTAGCTTCTCCTCTCTTCTG---------ATGACTCAAGGTATGTTGGTCTATTTATA------------------------------------------GCTTTTTACATGCTGTTCCTTCTACCTGTGAT-GCATATCCCCACTctgctgagcttttttttttttttttttcctacaagaCAAGCCTCAGGCAAACATTTCTCCAGGAAGTCCTCCT--------GCTCCAGGAAATTCTCTAGGAAAGCCCATCTT--ATACAAATGGAGCCTTTTTGTT-CATCTCTGTCTAGGAACTCACCAGG--CTGTGCCAGAACTGATGATGTGCTTGATAGTTCTTTCCATCAGTCTATGAGATCCTTCCAGGAAGACATTGTAGCTTATTACCTTTCTACCTCTATCCTCTGTTTTACTCCTAGCATGGAAGACATCCAGGAACTATCTGTGGAATTATGAATGTATTACACAGGGATAAGTGTTTCCCTGGGAGATTTATCTGTT--------------------------------------CCTGTCTACTGGAAGATGCATTGGTTTGGGTGTGCCTGTTCTAGATAAACAGTGAGGCTCCCCTGCGCCTGGTCAATCCTGGTGGTGGCCGGGGGTGGAGGAGCGGAGGAGCGGGTGTGTGAAAGCATGGACAATGTGGTATTCCCTCCAGGGTGGAAG----TATATGGG--ATATTGACGGGGAGGGTAGATTTTGTGAGTATATTTTTCTGGGTCATGGTAAGAGTT---GGAAAAAATCTGGagg

a score=17415
s chr3           100389496 1469 + 160039680 AGACCTATAAATATGAACAATAGCCAGTCTCATCAATGGCTTTT--CTTGCCTTCAT-TAGC-CTTTCCTTGCTAAGAACAAAGAGGTATTCTTTCTTCCTTTGAAAGCTTGGTCAACTTTCCCACAAGTCAGTGGGCTTCTAGAAACACTCTGGCTCCAAGAGCAGAACCTACTTTTGAGTGTCCCCTG-------------------TATG-----------TTTGTAGCCTCTTTACTTCTCTGAGCCTTAAGCTAAAAACCTTCTCTA-TCTCAGAGAACAGAATGTAGTTTCTAGTTCAAGATGAAAAAACACCAAGGCCATGACAAAATAGCACATCCTTTCTTCCCATGTTAGATCACAGTATACTTTGCATTTCTGCTCATtctcttctcctctcctctcctctcctcccctcccctcccctcccctctcctcttctcccctctcttctcctctctttccctcccctcccttcccctcctctcccctcccttcccccctctctttctcctctcctcttttctttctctctccctccctcctccctccctccttcccttccttcttcctctctcctttcttaactctctgtctctctttctgtctccttccctccgttcctccctctctccttacactccctTTGCTTAGCACCTTTTTGCCCCCATCCTTTCATTCCAGGATTGGCAAGAAAAGAGGGCACACTTGAAAGACACTAGTAAAAATTTATTAAGCTTCTAAGCCTCTATTTACAGAGATCTGGTGAATAGTACAGGAAGTACCTGGAAACTAGCACCAGAAATGACCAATAACATCCTCAGGTCCAGATTGATAAAATGGGGAAAAGGTGTTGTCTGAGCTAATGGAAGTGGGTTCCATTGTAAAGGAAATAGAAGCTCTATATATACAGAAACATGGAATTGACAGCTCTTTTGCAAG-GTCAggggaaatggggacattaaattctctgtcctttactgttct-ccagatgcaagtagtacctatgactaactgagcccaaagggaagccaagggataaagaaacccagaattttcaggccattgagatcagcctacctgtgggcaAATGAAAACAAACAAAAGACAGTGCAGGAAAGTATGCAATAGGGCCTGGAAAGAAACTCCAAGTCTCTAGATAGGACCCAGC--AGCATTCCCTTGTCCACACATCCTCCCAGTGCCTTAGCACGGCATG---GGCAGAGGC-ACTGTCTGCTCTGGG-----GAGGGAGGTGGACACATACTGTTGCTTAGGAGCCTAAGGTTGGTCTCTCC--AGTGGAAGACATGAAGTGATGAGGATCCCAAGATGCCTGAACACAAGCTAGTGCCCCCAGA-AATGTCTGTCCCTGCAGCAGGACTGTCTGCAAAGGTTT----TCATGGATCACTCTTTATAGGAAC-CTTCCAGTCCACCCTGAACATACCAACTGCA-------GACATATTTGGGCTTGGGGTAACTTGTAGCACTTAAACAGGGATAACACATTAACC
s HiC_scaffold_1 110294819 1272 - 233722169 AGACCTA-GGATACAACGAATGGCTACAGATATCAGTGGTTTTTTTCTTGTCTGTACGTGGCTCTGTTCTTGCCAAGAATGTGAAGACCACTTTTCCTTATGGGAAACCTCAG-CAACTTTGCCATTGGTCAA-AGACTTCTAAAAAGACTTTGAGCCCAAAAGTAGAGCCTACATTTACCTGACCCCTGGGCTCTCTGATTGGTGGACCATGGAGGCTTGGTTTCTGCAACCTCTTT--CTCTCTCAGCATTAATTGGAG---CTTCTCTGGTCTCGGAGA-CAGAGCACTCTCCCCAGCTCAGTCTGAGAACACATCAAGGCTCTGGGGAAGTAGCAGAATCATCCTTGCCAGGTCAGATCACAGCAGACTTGACAAGT-GGTTCCTTATCTT----------------------------------------------------------------------------------------------------------TCTGCTTGCTTTCTTCTGGGCTTGTTCCTTT--------------------------------TAGCTGCTTGCACTTTCCTCACT--------------TCTGTTCACCACCTGAATTACTTTCCT--------------------------------ATGTTGGCCTTCATT------TTCAAGGACTGCCAAGAGCAAATGGCAC-CTGAAAGGAGGCTGGTAAGAG-----TAAG----GAAGGGACTACTTACAGA-ATCTGGGCGAGGTCATGGGAAGCACCTAGGGATGAGCAGAAGACAGGGCTGGTGCAACCTTCAGGGCTGAAATGATGAAAGGAGAGAAGCACATTATCTGAAATTATGAAAGCCTGTGCCAT-------GGAAAAGAGGCTGCCTAC-CAGAGGAGCAT-GCACTGTCAGAACTACAGCCAGCGAGAAAGGAAATGATGCTGTT-AATGTTCTGTCCTTTTCTACTCTCCCACCTACTGTAGGTACTTCCAACTGGCTGAGCCCAAAGGAAAGCCAGTGTGCAAAGGAATCCAAGAACTTCCATCCATTGGGATCAGCCTCc---------------------------------caggaaaagatgaaaaagaatctGAAAGGGGAATCTGGTTCTTTGGGTTTGACTCAGCGTAATTTTTCCTAGTCCAT---TGCTCTCACAACCCCAG-GCAGCATAACTAACACAGTCTATTGCCTGCCTGGGGAATAAGAAGGAGGTAGACAAGAATTGTTGCTTTGAAACCCAAGGTCAGGCCCTCCATAGTGAAGCTCATTGC-TAAGCAGAATTCCATGGCACCTGACCACAGGTTGGTGATTTTGGAGGACACTTTTGGGTGCATCTCAGCCTTCAGGAGAAGCTTGCTGGCACAGACAACCATTTTCAGGCACTCTGCCAATCCA-TCTGAGCACTCAAACTACAGATTTGTGACAAATTTGGGGCTAAGGGGCCCTCTAGTGCTAAAGCAGTGATACCACACTACCC

a score=68954
s chr3           100394302 5794 + 160039680 [encoded data, 6355 characters]
s HiC_scaffold_1 110301809 5658 - 233722169 [encoded data, 6355 characters]

a score=43210
s chr3           100402520 4033 + 160039680 [encoded data, 4615 characters]
s HiC_scaffold_1 110311201 3968 - 233722169 [encoded data, 4615 characters]

a score=29169
s chr3           100413482 1243 + 160039680 AGGATGGTTCTCTGCTCC---TCCCTGTTCCAGAGACAGCCTCATCTTCTTGT------TCATGCCAGCTCCATCCTGTAGACAAAATGGTGAAGGTCGGTGTGAAAGGATTTGGCCATATTGGGCACCTGGTTACCAGGGCTGCCTTCTGCTCTGCACTTGGCAAAGTGGAGGTTGTTGCCATGAATGACCCCTCCATTGACCTCAACAACATGGTCTACATGTTCCAGTCTGACTCCACCCACGGCAAATTCAACGGCACAGTCAAGACTGAGAATGGGAAGCTTGTCATCAATGGGAAGCCCATCACCATCTTCCAGGAGTGAGATCCCGCTAACATCAAATGGGGTGATGCTGATGCTGAGTATGTTGTGGAGTCTACTGGCATCCTCACCACCATGGAGAAGGCTGGAGCCCACTTGAAGGGTGGGTCCAATAGGGTCATCATCTCCACCCCTTCTGCTGATGCCCCCATGTTTATGATAGGTGTGAACCATGAGAAATATGACAACCCACTCAAGATTGTCAACAATACATCCTGCACCACCAAATGCTTAGCTGCCCCCCCCCCCCGGCCAAGGTCATCCATGATGATTTTGGCATTGTGGAAGGGCTCATGACCACAATCCATGCCATCACTGCCACTCAGAACACTATGGATGGTCCCTCTG-GAAAGTTGTGGCGTGATGGCTGTTAGGCTGCCCAGAACATCATCCCTTAATCCACTG----GTGCTTCCAAGGCTTTGGGCAAGGTCATCCCAGACCTGTACGAGAAGCTCACTGGCA-TGGTCTTCCATGTTCCTACCCCCAAAGTATTTGTTGTGGATCTGACATG--------CCGCCTGGAGAAATCTGCAAAGTATGATGACATCGAGAAAGTGGTGAAGCAGGCATCTGAGGGCCCACGGAAGGGCATCCTGGG--------TTACACTGAGGATCAGGTTGTCTCCTGTGACTTCAACAGCAACTCCCACTCTTCCACTTTTGAT--------------------GTTGGGGCTGGTATTGCTCTT---------------------------------------------------------------------------AATGACAACTTTGTAAAGTTCATTTCCTGGTATGACAATGACTATGGCTACAGCAACAGGGTGGTGGACCTCATAGCCTACATGACTTCCAAGGAGTAAGAGACCCTAGATCATCCACTCCAG--CAAGGACACTGAGAGCATGAAAG--AGGCCCTCGGTTGCTGAGGAATCCCTATTCCAACTTGGTCCCCAACA--CTGAGCATCTCCCT--------CACAATTTCCATCCCAGACCCCCATGATAACAGGAGGGGCCT
s HiC_scaffold_1 224193761 1272 - 233722169 AAGATGTGTCCCTGCCTCAACTTCTCATTTTGCAGACAGTCACACCTTTTCATGAAGTGCTATGCCA-TTGCATCATTGAGACAACAATGGGAAGACTGGAGTAA-----TTTAACTGTAATGAGTGCCTAATCACCTTGGCTGACTTTAACTCCA------GCAAACTGGATATTATTCTCATCAGTGACCCCTTCATTGACCTCAACTACATGCTACACACATTCCACTATGATTCCATCCACA-CTCCTTCAATGGCACA-TCAAGGCTAAGAGCAAGAATCTTGTCAACAATGGAAAGCCCATCTCCATCTTCCAAAAGCAAGATTCCATCAACACCAAACTAAGTGATATTGGTGCTGAGATTTTTATAGAATCCATTGTTGTCTTCACTACCTTGGAGAA-ACTAAAGTATA--TAAATGTTGGA---------------------GCCCCTTCTCCTGA-GAACCCATATTTATGAAGATTGTAATCCATGAGAAGTAAAATAATTACTTTA------------------CCTATACTACTAACAGCTAA---------CCCACCTAACCAAAGTCTTCCATGAAAACTTCGGCATTGCAGAGGAGCTCATGGTTTTAGTCCATGCTATTACTGCTATCCAGAAAAGTGTAGATGGTTCTTTTGTGAAAAGTATGCCATCATGGCCTTGGGGCTGCCCAGAAGAGCATCCTTCTAATTACAGCCATATACTGTCA---CTGTAAGCAATGTCATTCC-TACAAGAGTGAGAAGCAGTCTGGAACTAACGTTCTGGGTTTCTACTCCCAATATATCAGTCATAGATCTGATCTGGAGAAAGATCTCCTGGAGAAAGCAGCTAAATATGATGACCTTAAGA---TGGTGAACCAGGGCTCAAAGGAATC-CTTAAAAGCATCTTGAAAAAGATTCTTTCACTAAGGACCAGGTTGATTCCTGTGACTTTAACAGTGGTATATGCTCTTCctctttagggaaaaaaaaaaaaataggatagttggtttttgttttttttttttttttttattcaaaagaaCCACTTTGGGAAACTTTatagatagaaaaatagaaaCGTTGGTGAGGGGGCAGGGAAATGCCAACTTCATTAGACTCATCTTCAGATATGACAATGAATCTGGCTACACAAA---------------------------GACATCCAAGGATTGGGCCTTCC-GGATCACCAGCTCCAGGAGAAGga-----agagtaagaaagaaagacTGTCTCATGCT-ATGGATCCCTGCTCAACTCTGTCCTTCAACACCCCGAGGATCTCCCCTTTTTTGGCATAGGTTTTACCACAGACTCC--TTACAA-AGGATGGGTCT

a score=42602
s chr3           100413486 1326 + 160039680 TGGTTCTCTGCTCCTCCCTGTTCCAGAGACAGCCTCATCTTCTTGTTCATG-CCAGCTCCATCCTGTAGACAAAATGGTGAAGGTCGGTGTGAAAGGATTTGGCCATATTGGGCACCTGGTTACCAGGGCTGCCTTCTGCTCTGCACTTGGCAAAGTGGAGGTTGTTGCCATGAATGACCCCTCCATTGACCTCAACAACATGGTCTACATGTTCCAGTCTGACTCCACCCACGGCAAATTCAACGGCACAGTCAAGACTGAGAATGGGAAGCTTGTCATCAATGGGAAGCCCATCACCATCTTCCAGGAGTGAGATCCCGCTAACATCAAATGGGGTGATGCTGATGCTGAGTATGTTGTGGAGTCTACTGGCATCCTCACCACCATGGAGAAGGCTGGAGCCCACTTGAAGGGTGGGTCCAATAGGGTCATCATCTCCACCCCTTCTGCTGATGCCCCCATGTTTATGATAGGTGTGAACCATGAGAAATATGACAACCCACTCAAGATTGTCAACAATACATCCTGCACCACCAAATGCTTAGCTGCCCCCCCCCCCCGGCCAAGGTCATCCATGATGATTTTGGCATTGTGGAAGGGCTCATGACCACAATCCATGCCATCACTGCCACTCAGAACACTATGGATGGTCCCTCTGGAAAGTTGTGGCGTGATGGCTGTTAGGCTGCCCAGAACATCATCCCTTAATCCACTGGTGCTTCCAAGGCTTTGGGCAAGGTCATCCCAGACCTGTACGAGAAGCTCACTGGCATGGTCTTCCATGTTCCTACCCCCAAAGTATTTGTTGTGGATCTGACATGCCGCCTGGAGAAATCTGCAAAGTATGATGACATCGAGAAAGTGGTGAAGCAGGCATCTGAGGGCCCACGGAAGGGCATCCTGGGTTACACTGAGGATCAGGTTGTCTCCT--GTGACTTCAACAGCAACTCCCACTCTTCCACTTTTGATGTTGGGGCTGGTATTGCTCTTAATGACAACTTTGTAAAGTTCATTTCCTGGTATGACAATGACTATGGCTACAGCAACAGGGTGGTGGACCTCATAGCCTACATGACTTCCAAGGAGTAAGAGACCCTAGATCATCCACTCCAGCAAGGACACTGAGAGCATGAAAGAGGCCCTCGGTTGCTGAGGAATCCCTATTCCAACTTGGTCCC-CAACA--CTGAGCATCTCCCTCACAAT----TTCCATCCCAGACCCCCATGATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACCATCAATAAAGTTCACTG---CACCCAAGGGGGGAAAATTATTTTTTTTTTCCAGGATGCTT
s HiC_scaffold_1 135784264 1248 - 233722169 tgttttattttttcttctcattttacagacaGCAACATCCT----TTCATGGCCACCTATATACCTGAGATACAGTGATGAAGATGAGACCAAATAGATGTTGCCATATTGGGTGCTTGGCTATCCAGTCTGCTTTCAGGACAG------GCAAAGTAGATATTGTTGTCATCAATTACCCCTTCATTGACTTCAGTTATACTGTGAATGTGTTGCAGCATGATTCTACCCACAGCAAATTTAGCAATACAGTCAAAGCTGAGAACAGGAGACTTATAACCAGTAGAAAG-------------TCCAGGAGTAAGATTT-ATCAGCATCAAAATGGGTGA-ACTGGTATTTAACATGCTGTATAATCTATAGGTGTCTTCATTACCATGGAGACAGCTGGGGGTCACTTGAAGGATGAAACTAAAAAGCTCAGCATCTCTGTCCCTTCTGGTGATACCTGT-TACTTGTGATGGGCCTGAACTACCAGAAGTATGACTGCTATCTCAGGATCATCAGCAATGCTTCTCATACCACCAACTGCCTAAC--------CCTCCTGGCCAAAGTCATCCACAAAATCTTTGGGGTTGTAGAGGGACTCATTATCAC----CAGGTCATCCTTCTTATACAGAAGACT--GGATGGCTCTTCTGGAAAACTGTAGCTTGATAGGCATGTGGCTGCCCAGA---TCATCC-----TATGCTGATGCTGCCAAGTCTATGGTCTAGATCACCCCTGGC-TGGATGCCAAGACTACTAGCATATGCTTCTGTGGGCTGCCTACTAGCTTGTCAGTTGTAGGTCTGACATGCTGTCTAGAGAAAGCTGCAGAATATGATGACATCTGTAAGGTGGTGAAACAGGCACTGGAGGGCCC-CTAAATGACAACCTGGCT---AcagaagactgatttttttcctttgtgacttTAACAGTGACACTCCTTCTTCCATCTTTATTGCTGGGGATGGCATTACCTTCAGTGATCACTTTGTCAAATTCATTTTCTAGTATGATAATGTATTTGGTTACAGCAGCAAAATGGTGGGCCTTATGGTCCACATTGCCCCCAAGGAG----------TAGGCCACCAGCCTgagcaaga--aatgaaaa---gagagggGCTTTAAGCTGAGGAAGTGT-CTTGCCCAAACTCAGCCCCACAACACTCTGAGACTCTCTCCTCCTGTGGGCTCCCATGCCAGACCTCCTGAAGAAGGGGAAAGA------------TGCTTACTCTGTCATGTACCATCCGTAAAGTCCACTGTGCCACCCAAAAG----------TTtgtatttttccacatactt

a score=106184
s chr3           100417597 9542 + 160039680 [encoded data, 10733 characters]
s HiC_scaffold_1 110320761 9126 - 233722169 [encoded data, 10733 characters]

a score=23740
s chr3           100436607 1135 + 160039680 AGGAAGAGACCTGGGAGCCTGTCCAGAGGATCTTCTGATGGCAGTACAGGACA-TGA-GAGGGTCTAGAAGAAGATGCCATGGCTCTCTGGGGTTTGTGGTCATGCt----agagtcacaaaatgtcagagct-agacagaagtagcttcctgtctgcccctctgatcgcctgtgagagcaggaactaggattgggagggaaataggtga-tttcccaaaatctca-----------------caccaagattagAACC-AAGCCTCATAATTCTCCTCCGTCACGCGGCCACCCTGTGACAGCCCTGGGCTGAAACGAGCTTTGAGATGACTAATTACACATATTCA---------TCTCCCACTGTAGTCTCTGAGATAAAACCAAGGTGTCACTTCCTCTTTCTGCTCTCACATAGAATGGGGAGGTTTCCAGTAAGCCATCAGATAGAAACCAGGGAGCCACACACGTCCCCAGGGACCTGGCACTTGATACCCACTCATGTGAGCAATTGATACGTAAGCACTGGATTGCT--AAGTTAAGCTTCACCAAA--------TCTGTTCAACTGTTGCATAGAAACAATGTGGTGAGGTC----------CAT------GTACTATCAGCCCATTAATATCCACA---GAGAATGAAAGAACATCCCATGCCTGTATGTCTGCTTGAAAGAGTGGCTCACAGCAACCCGGAGCAGCCAATGGAGGATCTCATTGGATAGA--------CTTGTCCAATGCTGG---------------------------TTCTGCAGCTCATTTATGTCCCAGAAGACATCCTCCTACACTTGCCACACATCCCTGGGTAATGTGTGTCCACTCCTTCCAGAAAGTTCTTTCCAAGTTCTTGGCGTGTCTGACAGGAAAGGGATTCTTACCTGTACAAGTCAACTCTCCCTCTACCCTTGTCACTAGAACTACCCAAGACCAGACTGTATATACTAGGAGTTAAGTCCAATTGAGATTTATATCCTTTCTCCAGGAACCTGCTGCTGGCTGGGACTCATCACTGCTCCTTCGCATGGAATGCTCCGAGGAC--AGAAGCCCAGCTGAGAGCTAGTTATG----------------CCTTCCTAATTTATGGTG------------------------GGTCACAGAGGGAATGAGGCTAGCATTCCTAA---GTCTCCCTGTGCCAAGTGACAAGCACTGGCCTCACGTGTGGCATCTCA----ATACTAACCA-ATCCCTGTGACACGGG
s HiC_scaffold_1 110347283 1225 - 233722169 AGGAAGAACCATGGAGTCTTCTGAGCAGAATCTCCTAATAAC--CACAGGAAGGTGATGAAGAGCTGGACAAAAGTTCTGCAAATCTGTGAGTTTTGTCATTAtgcttaaaaaaataactaactgTCAGTGCTGAGGCTCCCTTAGATTTTGATCTACCTTTATCATTACATATGAGCG----AACTAGGACTCAAATGG---TAAGTGACTTTCCTAAGATCCCAGGATCATTTTGAAGGTGCACATGGATTAGAACCCAAACCTCATAACTTTCCTACATCACACAGCCTCCCTGTGACCACCTCGTGCTAAAATAA--TCTGAGATGACTAATTGTGTATTCTTACAGGGGAAGTCCCCAGCCATACTTTCTGAGACAACACCAAGGTGtcacttcttctttcttctcccacGTAAAATGAGAAGGTTTCCAGTAAGCCATCAGCTAGGAACAAAGGGGTGTCAAAAAGCACCAGAAACCAGAAACTTGATGCCCACTCATATAAG-----GCTTCTGAA--ATTGAATTGCTAGAAATTCATGTCCTTTAAACATTTGAGTTCATTTAGTTGTTGCCAAGAAGCATTATGACGTGGCCAGGACACTGGCATTGATTCATAGTAGTACCTGATTAGTAtcaacagaggagaaagaaaatacattacaCATCCTCATGTGTATTTGCAAATGAAGTTCTTGGCAATATGCACCTGCAGATGAAGGATCTCAGTGGATGGGTCATGCTTTCTTCCTAGTCCTGGGAACCAAGACAAGGCAGTGACAGTGATTCTTCCAGATCATTTTCCTCCCAGAAAATAGCCACTGGCATCCCTCACCCATCCCTGGGCAGCTGTTGTCTAGGCTTTTAAAGATGACCTTTCCATGTACTTGTTGTGTCTGACAGTGAATGTGTTCC------------------------------------CTAGACCT---CACAGCTGGTCAGGACATCTAAATGGATCAATCCAATTACGGTTCACTGCCCTTTTCTGAGGCCCTGTTGCT-TTTGGGACTTGGTGTTGGTTCTCAGGATGGGGTGCTAAACGGACTGAGAAGTCCAGA-GGGGGTTAGCTATGAACTAACTCTGAGTCTCCTCCCTATTCTACAGTAGATGAAGTTCTCTCAGAACTCCTTGGTCACAAAGGTGAAGAGCTGAGCCTTTGCCACCCACCTGCCTGTGTCACGTAAGTAGCACTGGTTTTATGTACATAGCCTCATTTCATCTTAACTATAACCCTGTGAAACAAG

a score=37263
s chr3           100438350 3224 + 160039680 ATGTCACTCTTCAGAGAAA---AACAAAACCCAGA--GTTCCCGGTTTTGTTTTCAAGATCACCTCCCAGGACCC--ATAAATGCTGTGACTTGCTACATTAACGCCTGTGTTTTCAAAACATTCTGTTAACCATGTGAAATGCATGAAGTAGCAACTTCTGAGCTTGGAGGGGCCAATCAGAAGGCTGCATGATGGAAGACTTACCCAAGTGAGCAGTAACTGAGAGTAACTAAGATCTGCACCAGTTGGCTTCTCGGAACACCCTTATCTAGACTCTGCATGTGTCAGGCTTGGGAAACCAGACCCACACTGT--------------------GAAGTCTGGGCA--TGACCTAGCAGATTGGGGGTGAGAGGAGGTTACCTTCTGCAGTCCTGATCTGAGCTTTCTGAAACTACCAGTGGTCAGCAGGACCCAGAGGTACTTAACTTACTGTTAGAAAAATCATTTAAGTTCTTCTCCACCAGTGCACCCACGTCATGA---GGAGAAAACTCAA-GGCCTAGGGTAAGAAGCACACACCCAGAGGCAAGT---GAGGTCTGTTGAACAGCTGGGAGAACTGCCAGCTAT-----CAACTGATCCAAGATATCTGCGAAGGACTAAGCAAG-------ACTCAGCCAGGAGCAGACGAGATACACTGGCTTTAGAC-------TTCTGACTCCCCATAACATGACTGTTTTTGCTGTCCTCTACCTCAGCAGAAAGAGGTACCTTATGTCTGTCCCCAGACCTGCCACATAC----CATGCTCCA---GAACCCAGTCCCCAGCTCCCTGCTGTCGAAGAGACACTATTCAAACAGCTACTGCCTGTA-AAAGGCACCTACCCCATGCTTCCTGTTGTACCAAATAATAAAATTTC------CAGGGCTACCATAAAAGGCAACTGCCTCTTTCCC---------------TAAGGGCACGTGAGA-CTGCAG------TTGCTGTC--AGCAGATGAAATTTTGCCCACCAGATGCGGACTAGGTAGTGACCTCATTGCACATGTGGGTCTGGGTGACAGGGACACACCATGACTTGGAGACACTGTAAGTTGGTGGCATTTGCCAACAGCTGACCACAGACACCACAACTGGCCTTCCTAAGAACCAGAGGTAGCCTAAAGAACTCTAGTTCAGTAAAGTCCCCTAGCCTCCAGCAGCCCTTGGAGGGGACTAGCATTGCCCCCAGGG-GAGCCTATGTACTCTGCTGGAAGTGAGTTTGTGC---TCAGGTTTCGATGATGAGTCGAGCAAACAAGGCATGAACCCAAAGTTCCCAGGGCTCTGAACAATCATAACTCTCGGGAGGAGACAAACACCTGCAGGGTCAGTGGACTCCTACTTTCCTCCAACAGTGGCCTGGGCTACCTGT-GTACTGGGACTGTGAAAAAGACTCCCTTCATGCTA-------------------------------------------CAGAGGGATTTAGATAAGCAGGTATGC-----TCAGCACAGGTCTGCTTTACACTGGCAAGAGGCGCCCTCAAGGTCAGACTCCCTCTTCTTATCAGGA-CCCTTTGTCCCTTCCTCAGGGTCCCTTGTCATTCTAGACTGTAGGCTGGTGCCATCCGGCCTCCCACATCTTTCCTCCCACACTCTCAGACGCAAGCCCAC-----------------------------------------CCTCTCTAGCCTCACTCTAGGAATGACATGATTTCAGTGACCTTGTCTAGTAGCTTCCAACCCTTGGAAGAG-------TTTGGAAGCT--------------------------TTCTCACCCACTCCCACCTCCTGCCAGGAT-ATTTCTACACCGGGG-------------AACAGGTAGCCTCCAGCAGAGTCTTCAATTCCTCCCTAGGCTGTATATTCTAGGGCTCAAGGGCAGTGTGACCAGTCAGCAGCTCAGGGACACTGGCCAAGAGCATCTTTCTAGGACATCTCGAATTCCTGGCAGAGAGCCAGGAGA--GTGGTGTGAGGAAGTGGGCTATGCACTGTCACCACTGCCTTTAGACGCTCGGTCATTGTCACCATCTGTAAACACCCATGCAG--CCTGGGTCAGCGTAAATCATGAGTTAGGTCTGCTGCCCAGTTTTCTGTCTGGGCTGTTCGACCAGCTCTGCTGGGGAAAGGGGCTGTCATTCATGCTGACTGATGCAACCCAAGGCCCAGTGATCTAACAGCCATTATCAGCAGAGACCCTTCCCAAAGGGAACATGTACTGAGAAGCTCATTAAAGTAAAAAGTGAAAACTACCCTGGGGAGCGAGTATCTGTTACGTTTACTCCATTAGTGGTCCTCGGATGTGCAACAGTGAAGCAAGTACTTGTTACATTTCAGTGGTCCTGGGATGTGCAACACTGACTCTTAAGCCCAAAAGGCAAGGATTTAAGGACGATATTTGCATGTCCAAAGAAAAAAAGGTAGTAGATTATTTCACATTTTAAATAAAGATTATATCATACATCTTTCTC-TTGAAGCAGCACTTTAAAAATAGCTTTGTTTCTGCTCTAATCCGAGACCTGGACTAGGAGGGACTAACCTAAAGGGGTGAATGGGAATGTAGCCCACTCACATCTGCATCAGTTTGCAGGTCCACACTGCAGGAACGCCTGTGGCCAGA----AGTGCCTATGGCCACACTTCCCTTTCTGTCAAGAG---GGGCCACTTGCGTCATGAAACAGAACTGACAGCCAGATCTGTCTGCTAATAGGAA--ATCAGATGTTTAAACTGTCTGAAGGAATGGTATTCCTCTGCCCTGAGGTCACTTCAGGAGTGCTCATGTTCTCTGCTAAGAGCACTTAAGAACCTGCCA-CTAAGG------CCTCATTCTGTGTGTTACTTTGGACTTTGCCCCCGCCTTT------GCCGCTGCTGTTATCTTGACAAtcagctaaaatgttgcttcttccaggaagtcttctctgatccttcCCTGCCTCATG----------------CTCTGAGCCCATCACTTAGCACATTGACAAGCCTCAGTGCTAT-ATAGAGTCACAAGGTCCTGCTGAACAGGAACCTCCTTCCATGTCTCACCAAGGCCCAGTATTCTGCTTTCCACATGGCAGGCG-TCAAGAACGTACTAGGGA-GAATGGATGCAGAAACAGACC--GTGGA-CAGGCTCCCCTCTTT-GCTTCTT--GCTCAGTGCCC--------AGACGTGTCTGACTCTTCATGAACACACACCTTCCCCCAAAGACACATTTCCGCTCTCCCATAGGAGCAGAAACAAGTGGAATTTGTTTGGTCAAATTTGTAGACTGAGCTATTCTTTAAGGACAGAGACAGTCAAGCTACAGCCTGTG-AGTTAA--TGTGCTTTGCTGCAGTCATACGTTCATATGTTGTCCTCAGCTGACC----------CAAGAACTGAGGTGTCTCACTGCCGATAACA
s HiC_scaffold_1 110350121 3075 - 233722169 atgtCACCTTTCAATGCAAGTAAACAACTCCTAAAAAGCTCCTGTTTTTATTTGCAGAACAATATTCAAAAATCCTTCTACATTTGCTGACTTGCAACGTTAACTTCtatgttttcaaaacatttcattAGACATTTGAAGTGCATAAAGTCGCAAATTCTGAGTATTTAGGAAG-AAGCACAAGCCCACACACATCAGTACCTACC-AAGTAAACAGTAACTCAG-----------CTCTTGCCAGTCAGCTTCTCTGAACATCCTTATCTAACTACTGCATATGTTGGGGGTAGGGA-CCTGCCCTGCCCAGTCGGCTTTGGCAGAGGTGGCTGAAGCCTAGGGAGATGACCTGGTAGATTTGGAGCCAGAGGA-----CTGTCTCCattctttatctcctttttctGGAACAACCAGAACATAGCAGGACCCAGAGGCAGCCAGTTTATTTTTAGAACGTGCATCAAG----TTCTCCGCCAGTGTTCAAAagccaagaaaagaagagaacTCACTGGCCCAACTGAAGCTACAAACCCCCAAAGGGAATCCAGGAGGCCTAGAGCAGAGCACTGAGAAGAGCCACCTGTTACACCAGAGGAT--GAGATTCCTGTGAAAGGCTGAGCACATGTCCTCAGTCACCCAGGAA------ACATGCTCTAGCCTGGGGCAGCATTTCTCCTGCTCGCC-TGGCAGGGACATCTTTGCTGCTCTCCACCTCCGCAAACAGAGGGGCCTCCTGCTGGTCCCCAGCTCCACTGCACACAGGGTATGTCCCACATGCAGCCTGTGCTTCACCCAC--------AAGAGACCCTCCACTAACTGCTTTTCAATGAATGGGGGCCTCTACCCCCTCCTCCCTGCCaagcacagaaataaaatttcaatttccGGCCATAACTCAAAAGGTCATTGCCCCTTTCCCCTGTGCTGAGTCATCTAAGGAAGTGTGAGATCTACTGAACACCTGGCTTTCTAGGTGGATTAAATTTTATCCAGCAGATGTTTACTGAACACCCACAACAGTGTG--TGTGGGTCTACCTGGCAGTGAGACACCCTGAATAGGAGAGATTGTAAACTGGTGGCCATCCATGAAAGTCATCGATA---------------------ATGGACCAGAGATGGCCTAA-GCACACAGTCATAGCAAAGCCCTCCA------CGCAGCCTGCATAGTA-ACTGGAATGGTACCCAGGACGAAACTA--------GTTGGCA-----TGTATGCAGGTCGGGTTTCTGGGCTAAGTTTAGCAAATCAGGGAAGAACAAAAAGCTCTGAAG---CTGTGAGGCCATAA---TCAGGGTAAAACGAATATCTGGATGGGCAACGggtcctttccttcctcccccacTGGTGTGGGCTTCCTGTTGTACTGGTGCTGTGAACCAGATGCTTTCTACCCCAGGAAACTGGGAAGCCATGCTCACCCCCACAGAACCACAAATACCAGGGGGACTTCAG--GGCAGGTATCCCCCATTCTTCAAGGATTAGACTTAGACT------------CCTCAAGGCAAAACTCCTTCCCCTTCTGAAAAGACCTTAAAGCTTTTCTCCTGGTTATCTGTCAATCTGTGTTGAAGGCTGTGCCCACCT--CTCCcaacacttacacacacacacacacacacacacacacacacacacacacacatccagagCAGGTCCCCTCTTACTGCCTACCTGTTCAACATCACCCTAGAAGTGGCTGCCTTCCAGTGACCTC-TTTGCCTCCTTAAAGACCCAGGGTGAGCAGTTATTTGGGAAACTCCATGCCAAGCCTTTCCAACAATTTATTTTCAGCCATCCTTCTCACCAGCAGAGTTCATTTATGCCCAGAGGCTGTCTGTGCTGGAACAGGAAGCCTCTAGCAGTGTCATCAGTCCCTC----AAGTATACATTTCAGAGCTCAAGGGCAATGTGAATAGCTAGAAGCTTACAGACCTTGGCCAGGAG--------------ATTTTGCACTGGCTTCAGAGATCCAAGAGCATGTGCAAAGAGGAAACAGGCCCTGCACTGCCATCACCATCCCTTAACATTAG--CTTTTTCATCATTCCCAAACCGTCATGAAGCTCCTGG-----------TCATGTAGTTGGT----------ATTTCTTGTAT-------------AGTCCTGTAAGTTAAA-------------------ACTG--GATATCTTGGGCCCA-----------------AGCAGCAGGGACTT-------------------------------------------------------------------TATCAGAtatgatttctctatt----------------------------------tttttt--------------------------------------------------------------------------------------aaaaagataataaacatttttatgttttaagtaaaaattatactataaatgttGAGCTTTTAAGTACCACCTT--AAATAATATATTATCTAACACAATCTGTGATCTGGATTTG-----------CTAAATGGTT---TGAAGATTCTGCTCA---------------------AGGGTAACCCTGAAGAAACAAAGGAACACACAGAACACCAGCTAT-GCCCTGCCCTTCTCTCAGTGTAGAGCCTGGACCACTTGGAGCATGGAACATGACCAAGAGCCAGATGCACTGGCCTTCGGGAAACATCAGATGTTTGTATTGTCCAGAATAATCGTA-TCATCT-CAAAAGGGTCAACTCAGCAGTGTAGCTATTCTCTGCAACTGACATTTAAAAACCTATCAGCTGAGGTTGTTTCCCAGCACTGATTATCGCTT---GTTCTGCTCCTGCCCTCATTTGAGTGGGTCCTG--GTCAAGGAAGTCAGCTTAAATGTTGCTTCATCCAGGAAGTTTTTCCTGATCTTCCCCCAACTAATGGTGTCCTGTCATTTCCATTTTGGCCTATCATTCATCTTCCTTGCAATCC----CACTGTAACTGAGTTATAAGCT----CTGCACAGGA---------CAGGCCTCCCCAGGGTTCAGCA-CATACCAACCACAGGACAAGTGTTCAATAACAttctatgaatgaatgaatgaacaggcAATCCTTGTGGACCAGGAactcttttctagctttttaggcATGGAGTCCTTAAGTCAAGATATACCAAGTTCTTCTTAATTACATGTCTCCCCACACAGATCTATTTTCTCCCCACTG-AAGAGCAATAGTAAGTTGACTCTGT----TCCTATATGCAGCCCCAG--ATTTCTCTAGAACAGGGAAGGGAAAACTGTGGCCCATGAAATTAAGTTTTACTGTGCTACACGCATACTTTCACATATTGCCTGTGGCTGACCTTACAATATACAACAGCTGCAGAGT-TAACTAGTGATGACA

a score=18589
s chr3           100443911 917 + 160039680 TACCCAAGGCTTGCTTTCCTCACTTAAAAACACCTACACATGGGAACCTCCAGCTCCTTCTGAGAATTCAGTTAGGTCACTGGTGAGCCTGTTTTGTAAATAGAGAAACTGC--TGGTGTCACCTACGCCACCATTTTCCAGTTCTCTTGAAAGCAGCACCTGCACACAGCCCGTCACTAGATTCCAGTGACTAAACCAGTTTCCCCTCACGCTCTTGGTCTGTGCAGATGCAAATAGAGGCAACATCTGGAGAGCA-----GTGACTTGCTCTGCCTGCCAGGTTACAACTGAGTCAGAGACAGGATGAAAATCCCCAGGGCCCAAGTGCACAACAGCCTTGGGTCTTGTGATGGGGAAACCCAAAGAGTGA------AGAATTCCCTAGAGACTTTG--GGTGACAGA-CCATCTGAGGCC--AAGAACTAGGGATGGAAGGTCCAGGCACCCTGACTAAATGT-----TGCAGACATTTGTATCTG----CCTCTGC---------TGTAGA---------TGTGTGTGGCATGTGTCCATTCTGTGTGGGCACGTGGCTACGCAGAGAACCTCCCTTCCAGGTGTTGTCCCGTTACTCGGGCTGCTTCACCCCT-----TGAAGCCCATGTACTGAAAACAGAAAGATGTGGTTTGCATTCTACCTGCTTCTGGCTT--TGCCCATCGGATCACAGAAAAGGCTTATCGGGAGCTGGAAAGAGTGTGATTGGT--CATGCCTCTTCACGGACACCCCACACCTCTGCCATGATCACC--GTCCTCCCCA---CCTTTTGAACCTCCCCAGTTTGTCTACACACATTGTCCTTTTAATTCTTAGCGTACATTTTAATAAGCAC------TAAAGA-TCAAAGACTACTGAAGCTGG---AGATCATAGCAGTCCAC-TGTCCCCTCTCCCAACCTTATTCTGAGTTCACTCTAATTCC----AAAGTGGGGGTGACTGGTATGAGATC
s HiC_scaffold_1 110354626 954 - 233722169 TGCCTAAGTCACAGTTTCATCCTCTACAAATACCTACACGTAGGGTCTGCAGAGTTGTTCTGAGAATCCTGTGAGGTCACTGCTGAGCCTATTTTGTAAATACTGAAACTGCCTTAGTATCATCTACATCACTGCTTGCCAGCTGTCTTGAAAGCTGCACCTGTGCACCGCCAGT-------TTCTTGTAGCTAAACCTAGTTTTTCTCAGGCTCTTAGCCTGTGGGGATGCAAATA-CCATGACATCTGGAGAGTCTTTGTGTTACTCTTCCTTCCTGCTTGCTTGCAACCTTATAAATGAAGACATTAAAATATCAGGGCCCCAAAGACATGG-AGCCTG-----CTGAGACAGGGAAGACCAAGAGGGGAAACATGAGGATGCCCTAGAGGCCCAGAAGGCAGCAGACCCATCATGGGCCCAAGGGGACATGCACAGCCACTCCAAGAGCATGGACTATGTACTTGTGTGCCTCAATGTGTATTTGTCTTCCTTTGTAATTACAAATGTGGAACCAgaatgtgtgtgtggtgtgtgcacGTTGCCTAGGTTCACATGACCCTGCACAGTA---CTATTCCAGGAGCTGACAATGGCGTCATACTTCCTTACCCCTTGAAATGAAACCTGAGCACTGAAAATGCAAAGCTGTGGTTTACATTCTGCTTGTTCCCCATTTCCTGCCCATCAGGCAACAGGTA---CTTA---------GAGAAAAATGTGGGGAGCAACAGAACTTTTCATGGATGCTCCTTATCTCTGCCACATTCCCCAGGCTCTTCCCATTTCCCCTTGGTCC-CCCAACTTTTCCCACATGCATTGTTCTGCAAACCCTTAGAATGAATCTAGACAGATACTACTGATAAAGATTCAAAGACTGC-AAAGCTAAAACAAAGCATAGAGATGCATAAGTGCTCCTTCCC-----TACTTGGAAAGAACTGTAAATCCCTGAGAAGTGAGGA-GACCAGTGCAAGGTC

a score=41133
s chr3           100446014 2920 + 160039680 CCATTTGCTCCACCGCCCCTCACAACAGGGCTCTGTCCCTTT----------------GCTCCACCA-GTC------ACAGGATGTAGTCCCTGCATCCAGTTCGTGCTAACCACTGAGGCTACCACCCACTCCTCTCT--GCCCGTGGAACATCATGCTCTCTGCTCTCTGGGTTCTCTGCCTGCCCTTCTGGCAGCCCTACTCAGACCTCCCGGCTTGTCCTCCTTTGCTGCATCCCTCTGAGTAGATGCTCTCTAAGGGACCAGCTCTAGGCTGACTTTTTCCTGCT-GAGTGCTTTGACTATACAG-GGCAGG--CAGGCA--------TCACTGTGACCCC----GGCCCTCTCATACTCCTGAGCATTGAGACTAAGTGGCAAGTGTCACCACCCTTTCCGGAAATTCAGATGACGAAAGCACCCCACAGCCTCCT-ACCATGTTTTCTTCTGTTAGTTAATGACATCACACTATCCA-TCAGTTTCCAGTGATAGAAACTGAT------ACCTCTCCTAAGACACCCAACACCAGCACTCCCGTTTCCAACCAGTTACCAGTGCTGTAAGACTAGCTTCTAAACTTCTTTCCAGTCTTTCTTCTC-------TGCGACTACTACCTTAACTCATGTCCTCATTAAACCCCTTGACAAAGGGGTAAAAAGGATTCAAGTGG---AACCATGCTGAGAAGACCTTCACC--------AGGGCCCATCACAATGCAAGCATTAGTCTAGTTCAGAAACAACAGGC---TCCTTCCATGAGGAGGCAACATTCTGCTCCTAGGGGAGATAAGATGAGCTGGTCCCAGCTTGAATGAGTCACAGTTTATGACGTATGCAGGTTTCTATTGGCCATAGCCTCTCTGCCCCTTCTCCCATACAATATGTCGTATCACCCTCCAGAGAGACCCTGCACTGCCTATCCAT---CATCCAACCTGCACA------ATGGCATCCACTGTTGCAtgtgatggatggaatctaagctggctcccagtgcccccacctcctataatcccag-agttagac--------aactccttct----cttgggt-----ctctctttggctttcttgaaaccaatagaacacagcaaaggtgatgggtgtgctgtttcc----------taagtggttgacatacc------cttgctagaagactc------cttctcagctcccatgcttccatgaagcaaggaccgctttggcatgctccacattcgaggaacagagagcactctctgcttaatggacatcactggctctcaacccagcagcctgcaaggtgctgaactctgcaacaaaggttgtgcaagtgagccaacttag----ggatttaacacagcaaagatttaa--gtgaacaa------aaa---------actccagccttgtg-gaaaccctgcaac--aatctgc---tcagccctgttctga-gtccagccaccgggatctatgacatagtaaat-------------------CGAGTTTACACCAACTTGTCACATG-CTGTAGGAAACAAAAACACTTACCGACATTTCAGCTTGAAGAAATGGAGCTGAGCCTGTTCTGCTGTAAGCATGTGCATACA-GTCAAGGTGTACCACACTTCCCCAAATCCTCTGGGCCAGTCCACCTAACTGGTCTCACTTATGCATACTCCCAGACACCAACTTCTCT-----ATCACT---CCCTTGTATTTGTTCTTTGTTTGTTTACAGTTTGAAATGCCTACACCCCTGCCTTGGCTTCAG--TCTAACTGAAATGACACCTCCTCAACGAAGCCTTC-TAGATTGACTTCTGGATTGGATTAAACTTCTGGGAGTTTA-------CTGGGAGTTTCTCTACGATGCACCAACGGCAGGGTCCTGTGGCTCA-----------TACTCACTCCTCACTCC---TCTCTCCATAGCCTATTTATTATTGTATGCCAAGGACCTATTGGCCCCCATGGATGGGATAAGTCTGTACCAAATGCACGCCCTGCTCAGCATAGCATCCTTTGTCTACCAGGAATGTCAGGCTCAGCCAAGGAGCTACATATCTATCTGGAGCAGAAGACATGGTTTTGCTGT--CCCTAGTGCCTCTCTTC-AACAGTAGGATTATATGACATTTCTGTATGTGAGGAGAACTGCCTTCCAAGAAGAGTGG-CCTGGGTGAATGAAAGGCCCTTT-GTTGTGCTCACAATCAGAGCCAGGGAGAATTTGGATATGCAAACAGGAAGGACAGAAGTGGACAGGCCTGGCCACTGCTGGGGACCACAGAGGTAGCAGAGGTGACA--GGCAGGAAGAAATCCCCAGCGGAGAGGA-----------------------TGTTCAGCTTGAAGTTTTGGACATTGTTGATGGGATGTCTAGTTTAGGGAGGGGGAGGGGGATGAGAGAGTGG--------GGGACTCAAATGCAACTGGGAGT---------TATCTGGCCAC-CTTGATCACTGCGACAG------CCTCTCCTATAAACTTTCCATCAAGTCTGTCTTTAATGTTATGCCGTGTACACTTTAGACCGTTTTGTGGAAGAGGCTTAAATGAAGCTTTGGG------AGTTGAGGAGAAGACCCAG-------GACCCAAGCTCAACCATAACTTGAGCAAAAACCACAGATTCAGCGGCTTAGGATAAGGCATAATCGCAATAGATAACCCAAAGCAGCAAACTCTTGAGAAGGCTTGGACCTTCCCAAAGGCAGA----GACATGAATGAGTCTGCTTTCCTACCCCGCCCCCACCTCTACTAAGAGGGCTAGTGGTGAGGAATCCACAGAGC----------AGGTACAAAA-------TCCTTT------ATGCTGTGAAGGTACTCTGAATGCCT----------------------GAGAAGAGTT-----------------------------------------------------------GAACAGCCCCAGAGGGTAC---AAATGCACATGCGTGTT-----GTGCCTGTGCATCCTCCTTGGGGGAGGGCAGGGCTGGGT-TTTCACCAGGTTCCCTAGAATGCCAGAGAGAATA--AAGAGGTCACTGGATAGTCTCCTTATCCCAACTCTATTGTCCACAGAATATGACAGGC----CTGGCTAGCCACTAT--GAATT-----------------------CCCCCTTCAGACCCCAGCACCTATAGCTTCCAAGGCTCTACAAGAACCTGGGGTTAAATCCCTTTGAGAATCAG
s HiC_scaffold_1 110356046 3120 - 233722169 CCACTCCCGTCTCAGCTCCTTCGAACAGGGCTTTGTCCCTCTCCACTCACTACACTTGACTCCACAAAGTCTTGAGGACAGGCTTTGGCCCTT--------TTCATGCCCACAGTTGACACTACTGACCACTCTTCCCCTGGCTCCTGGAACATCATGCGTt--gct-----ggctttccacatgcc--tctggaggctctgtctcaagctcct--ctttttctccttcgcCAGCTCTCTCTGGGTAGATGCTC-------------CTCAAAGCTGACTCTTGCTTTCTTGGATACTCTGGCTCCACAAAGGCAGTTCCAGATACTAGCTTCTCCCTGTGATCCCCAATTGCCCATCCCTAACCCTCATCCTAAAATATATG-GGCAATTATCAGCATCTCTTCTCAAAAT-CAGATGCCTAAAGTGCCCAA--GTCACCTCGCCATGCTTTCTTCTGTTGGTTAATAACACCAC--TAGCTGCTCAATTTCTCACTGTAGAAATTTATTCCCACACCTCCCC----ACAACCAGCACTATTACTGT-ACATCTGACTAATTATAACtcctgca--------ttttaaatttttttctggtcttttctttcctgttcctaTGACTATCATTCTAATTCATGTCACCACCAAACTCCTTGACAAAG---TATACAGGGGCTTTGTGGCAAAATCAGGGTAAAAGGCCCCATACCCCTTTCTCAGGGTACATAGAGACAACAGTTTCAGTCCAGCTCAGAGGCATCCAGTCTGTCTTTGCAGGCAG-GATGACATCCTGGTACAGGGTTGCACAAGAAGAAGCCATGCCTCCCTAAATG----------CATGAC---TGCAAGTCTATCCTGGAGAT-GTCTCCCTGCC--TTCACACCATCTATAGGGAACTTCAGTCTCCAGAGGGACACATCTGTCTTTACCCACACCCACCACATATACACACAATTCATCACTGCTGTTGCTGACTGCGATAGACAGATTCTA--TTGGCTCCTAATGCCCC-ACTTCC---AACCCGAGTATTTACACTTCTGTGAAATCCCCTCCAGAATGTGGGCAGGAGCTATCAGTGGCTTCT----AGTCAAGGGGACACTGCCAGAGTGATGGG-ATTTTATTCCCACAGTTACATTATGTGGACTTCATAACTTGAGTCTTGTTAGAAGACTCTATTGCCTTCTTGGTCCACATGCTTTGGTGAAGCAAGTGTTACTTCAGAGGCTGCCATGTGGAAGGAACCAACGGTGGTCTCTGGGTGACATTTAGCTCTGGCCCTTGGTCCAACACCTTGCAAGTTACTATA----GCAAC------TACACAAGTGA----ACTTGGAAGTGAATTCTATATGGTGAATTCTCAACTGTGATCAAGCCCTGAAAGACACTTTGACTGCAGCCTTGTGAGAGACCCTAAAGCCAAAGCTGCAACTAAGCTGTGATTTGATGCCTCCCTATCAGAATCTGCAGGATAATAAATGCATGCTCTTTTAAGGTGCTAGATTCGTGTTAATTTGTTACATAACCCTGGCAAAAGAACGAActtgctattacttctgtttgAACAAACGGAAGTAAGCTCTGTCTGCTGCAG---TGTGCATATATAACAAACAGAGGTATACTGGCCAAAACCCTGCAGGTCA-CCCACCTTACTGGTCTCTCTTGTACATCTCCCCCCACaccaacttttatttttaatcactaaATGCCTATATTTCCTCT-------------ACTTGAAATACCTGCCTTCTTTTTTGACCTTCAAAATCTAGACGAAATGTCACTATCACAATGAAGTCTTCAGAGAGTGATCACT-------------CTTCTGGGATTTTATAGCTTGCTGTGTATCCTTCTACCCTGCACCAACTACTGGGCCCTGTGCATGACTACCTTGAGGTGTCCTTTTATCGCTCAATATTCCACCTCATccaattcattattttgttcccAGAACTTATTAAATCATA-GGAAGTcaaaaatacatgttaaatgtTCATGTAGCTCAGCCTAATACACCTCTTCCACCAGGACCACCACAGCCAGTCAAAGAGCTATATAACCATTtg------aagacaaagtcttgctattgCCTTGGTAGCCCTCTTTTAAGACTTTTGTCATATCTTATTTATGTAAATAGGGAGAACTACCTTCAAAGGGCAGCAGATCTAGGTGAGTAAAAGGCCCTTTTGTTGTGTTCA------GAGCCAGG-ATAATTTGGGCAAACTAAC--------CTGGAGTGG---------------GGTGAGGGCCA--------ACAGAGGTGACATAGACCCCAAGAAATCCCCTGCAGAGGGGAGGCCAAAGACTAAGAGTGACTAGTGTTCAATTTGAAATTGTTGACCTTGTTG---------------TAAGGAGAGAGAGACTGACAGAAACATTACTTATCATTTGAAACAAATTCATCTGGGTATCCTTGATATTATCTGGAAATTCTTAATTTCTGTGACATAAATTTCTCCTTCTATATATTTCCTGTCAAGTTTGTAATTAACATT--GCCTTGTTTACTTTAAAGTATTTTGTGGAATTA--TGAATAGGGGCTCTGGGCCATTGGGGCACGGAATAGGCACAGTGCAAAAGATTCAGGGTAATTCATAAACTGAACAAAGGTCACAGAATCAGGAGTTCAGATCTAGGAGTGGCCACAAAAGGTAACCACAAAGGGGAAATGTTAAGAAGGGCTTGGAACTTTGCAAAGGCAGAGTGTGACAT-CTTGAAGCAGCTTTATT------TAGGCAATCTTACCGAGAACTCAAGGAGAGAGAGGCCAGCAGACCTTGAGGCTAAAGTTATAACACAGGTGGCCCTCTGAACAGACACTGAGCAAGGACTGGATATGCCTCCTCCCACTCACCCATCTCAAGGGGGAGAGTTTGACAGCAGATTAGCACAGGTCTTCAGCTGAGGATAGAATGAGGTGGTGTGGGGAGCCCTGACAGCCCAAGAGGGGTTGGGAAAACCTCATATTGGCTCACAAGTGGGTATGCACCTTCCAAGAGAGA------AGCTGAGTGTTTCATCAGGTCTACTGGAACTCCTAAGAATGTACTGAGAGGTTTCTCTGCACTCTCCCT---TCAAGTGTAAGTTAGTTAGAACCTGGCCAGCAGCTCTGGCTGGCCACCATCAGAGTTCAGAACGTTGGTACAGACAGTAGCTCCCTCCACGCTCCAG-ATTTGAAACCTCCCAGTCTCT--------CTGGGGCCAAATCCCTTCGGGAACCAG

a score=41533
s chr3           100449207 3408 + 160039680 GGGGCAAGGGGATTGGGAATGGGCTCTGGAACCATCTCAGAACTAGATTCTAATGAAACTCCAAAATTAAATGAATTTTCCAGATATAAATGAAGAA--AAATGAAGGAGCC----TCTCATCTCATGCATTTGAAATTACTTTTTAAGTGTTCATTCATTTGGATTTGCCAGTGCAGAGTTAGTGATAACTTAGCAGTGGAGTGTGAGCTGCAAGATGGACAATGGTCCTGCCCCAAGGCATGCTGGGACACAGGTGTACGAGGGTCTCTTTCTTCCCTTGACCATTTAACTACAATTGGTCTTCCTCACATTTTGGGGTGGGGAATTCAAAGTCCAAGGCTTGGGGTTCCTGGTTGTAGTGCTTCCTACAGGAGCAACACCCCATTGG--------GTAGGATACCAGAGCCTCCTCCAATCAGAACACAGCTGCTTTGC-CCTGCCTGCTGGGTGGATCAACAGTCAATGACTTCATGTAGCAAATGGGTTTTAATGAGAAAGGAAGAACGTAGAAAATCCTTTGGG-ATCATTTCCCCTT-AATTAATAGATACAATATTTAAGCATAGTGAAATAACTTCTCTTTCCCAA---TTCTCCACTGCAGATTAGTCACTAAACCAGTGTTCCTCAGGCTTCTGTTCGG-ATCCAAGACCCTTAAACCCTGTGCTCTGCTTTCTTCTCCTCATCTTTCTAATTCTCCCTTCCCTTACCACAGTGCCTGGAAAAGTGCCGCATCCTTGGTCATGTGGGCCAACCTCAGTATCCCTGATTCACCCCATAGTCTTCTT----------------------GAAGGATGTCAATCCCTGCTGTTAGTGCTGACCAGGGTCCACAGCTGGGCC---------AGAG---------------------------TAGATTCTACAGACCATCACCATGTGCTGCCAGGTCTAGTGTCCCTGAGCCACACTGGTCTGCCACTGTCTCTAGTAGGCTCTGGTTTAGGACCTCTAGCCTCCCTTCAGACCTACTAGCTTTCAGAGTGGCCAGCAAAGGC---CATCAATGTTCAGGCTAC------------CTGTTC-----CTTACCAGAGAGAGCTGGGCACAGTGAGGACCACCATGTGACTACCTAGAACCAAGCTCTGCAAATGAAGACCCAGGGAGCCAGAATGGACAGGGCTGTGCCCAGTGAAGCCACCCAAGGGTGTAGAAATGGGGGGATGGGGCTCATAGGAGAATGAGCACCAGA--GGTTCTCCTCTTAGAAAACAAGGGTTCGCTGGATAGAGGAGATCAGAACTGTCAGTTGCATGGCTCTGAGATTTGATTGAAAT-------TCCTGGACAGGACAGATTATGTAACCAGAGGCAAGTGTGCCTCTTGGCTTCACTTTAGCAAGTCACCATTAGAAGCAACCAAAACCATTTGCTGAATTTACAGTCCACCGCATTCTGGGCATTCTGCTAAGCACTTTGTGCACATATTTGAGCCAGTC----------ACTTCTATATGTTGTGTATTGGTTTCTATTTTCCTCTGTTCTATTGATGTGTTAGTTAACACATGATGGGGTTGGGTAACTATAAGGATTACCTAGTCAGTACAGGTGAACTCAAGTCTGAAGAGATCCACTCAATCTCC---------------------AATGCTCCATATTGACAG-------------AGTCACCATCCATGCACCCCAACACACTCTACCAC-CCACCGTCCCTTCCC--------------------CCCACTTGTCCCCATTTTCCCCAGGCCTGCTCCCCTGTCCTTTCTCTCCCAGTAGCACCTCCAGAATTTGCTTCCTCATGGGCTCTCATATGCATGCACAAATTGCTGCCAGCAGGAGCCCAACTATGAACAC-----AAAGACCCTAACTCTGAAGGGAATCTAGGCTCAGCTATCAGACT----GGTCTCATCCATGG-------------CTTGG-TGTGGTTTAACAGCTCAGAACCCTGGCTCTATCTCTGCATTGCCAATAAAAAGATAGAGTTGTGTTGGGCAATTCTTTGCCTTACACAAATTCTTAATCTCCTGTGTATGTTTCCTCATCCACTACATGTTGATAAAAGCCTTACACTAAttcttaactgcatgttgataacacatgcatatatttcactggttgtttgtgagaattaggttaatcgatacatgaaaagca--cttagaa----tcatattaatgcctgTGTGT-----GTTATCAGTGGTGGCCGTGGcagtatattttgtttactaagcaaggcatggaattgtgcagtggattttaagaagaacactaacatgaagat-gagttcttgaagtgctggtgctcaaaggacatagctttggGTGTGAGAGA-------------AGCAAACCTCCATCCCTGTGCGATCGGATAATCCAGCAGCAGAATGGACCAGAAGCTGTGGGAGAGCAGAGGTGCAGAGCCAGGGAGTCACTCCACTC--CTGGCCTTTCTTAAATT--CCAGGCAGATCCCTAAGTTTGCAGCTTTCATCCTCCCAAGGTTTTAAAGACATTGAAaataacaacaacaacaacaacaacaTTGAGTGGCAAACAGATGAAGATTTTTAATtttatttttattttatgaatataagtgtgtgtctgtgcatcacagttgttcctggtacctgggaacatcagaagagggtgttgaatcttctggaactggagttacgcatgactgtgagctgccatgagggcgctgggaatagaacctaggtcttctggaagagcagcctatgctgttaaccactgagccatctctccagccTGAAGGGCTTTTTAAATAAGAAAAATAGCACAGA-CTTTAATAATCCAAATAGCACCAATGTTGTGGTTGCTTTCCCAATGGTTCCATACCTCTCTACCTACCAGTCCATTCCACT----------GTTCAGC--------------------------TTCCCCAAGGCAGA---TCCAGCTTCT--CGTTG--GGtcacagtcttagggaggggtagccaggcaacaaggtgattcctgggtagggaagcacaggag----------------------gagagcctgtggtctctaccctgggtggacagaatggaggcaagaggca-----tttcagagat-gagctaggcagctggggaggtca-agcccgaggtctctgcagggtggtgtattggagaacatttctgagagggcactgcagagag----------ctgcaggtggtcttctagatccttcagctgagcagtggcataagccagtaacca-gggagggcaagagtctcactaaagggttagagggaagtgccccatgttccacaaag------actgtttctattccctccagagagagcagac------aaaac-----------tgtgtaaagcccccagaagagcctggcccca-----agaggagactgaatgttgttccgttcacatt---------------------atagacgtctccttccaagtcaccacatcccgagcaaagctt-ggcatat-tacagacaggcaaagatatc-------cagtgaggaaacattcacaatatctgcaatgc---aagaat-ttatcaggactatccaatggtggaaagatataactcagaccaagaagcgtg-gtcagtggtggcagatgcagaacggacacaagtggtggaattagagcaca
s HiC_scaffold_1 110360995 3289 - 233722169 GGAGCAGGGATGATGAGACGGTGCTCTTGAGGGATTCAAGGGAACAGTGATACTTTATTTGCAAAACTGTGTGCAGTT-----ATACAAATAAGGGAGGAAATGGAgaatacattttctcattttactcatttgaaaattaattttaaaagtttatttgttTGGATTCACCAGCCCA----------TAACGAGGC--TGGAATA--------AGGTTGGGAAATGTTTCAGTGCCAA--CAAGGCAGAACATAAGCTTAACGTGTAGACCTGTCTCCTTTGGCAGTTTATC----ATT--CTCTTGTCACAT---------AGGCTTTCACAA-CCTGGGCTTGGGGTTC-----TATAGAGGT------GGGAGCCACACGCAGTGGGCACTACATGTGGGAT-CCTGCATTAACTCCAGTTTG-------CTACTCTGTGTCTACCTGCTGTGCAAATTATCTACTGA-GAGCTCATGCAACAAATGGGTTTTCATGcttaaagaaaaatgtagaaaatcctTGGGATATCAGCTCTTCTTCAAGTCATAGacatagtattttaaaacactaaatttactttttttaaaaaaaagttctttgtTGCAGACTATTCACTGAG---ATGTCTTTTGGGCCTTCCTTCTGCATCTAGAGCTTTGAGGGCCTGCTTTGTGCAGCCTCAACACTATCCCTTCCTTCTACACCCTCCCTGTTTCTGTGCTTAGGGAAAGTCTATTGCCTTGAACACCTGGACCAATTCTAGTGACACTGGCTTATCA-GTGGTCCTCTTTGGGGGAGCTGTGGCTTTTAGGAGAGGAAGTC--------CTATTGGGGCTGGGTTCTGTTGGTAGCTGGGCCTCAGGAAAAAGAGATGGGACCAGTAGTAATCATGACACACTGGATTGCACAGAGCTGAgccatgtgctgcctggtctgaTAACTCTGTTCCAGACTAATCTGCTGCTGCCCTTGGGTTCCTCCAGCTTGAGACCTCCACCCTCCTCCTGGACCTGCTGGCTTCTAGAGCTCCTGACATAGGAGTACTCTAACGTTCAAGCTGCTACGGTGAAGTCCTGTCCTATGACTTCCCAGAG-----------------------CCATG--GCTATCCAGAGCTAAGACCAGCAAGGAAAAGCCCAGGGCACCAGAATAGACAGGGGTGTGCTCAGCACAGCTGCTCAACAATG---------------GATTCTTGTTGGACAGCCAGCACTGGCCCACCCCTCTCTTGAGAGAACAAG--CTCCCTCCCCAGGG------AGCCTTGCCCATTGTGTGACTCCCTGGCTATTCTCAAGTCATGAGCTCATGAGCAACATGGATTATCTAAGCAAAGGCAACTGTTCCTCTTGGCCTTACTCCAGCACTTCATTATTACAAACAGTGAAGACTGTTTAATGAGTTA-----TTACTACATTCCAGGTATTCTGCTGAGCCCTTTATGTGCATATCTGAGTCAATCCAAGTCAATCATACCTAAATTTTAAGTA-------ATATGTTTCCCCATTTTATCAATGTGTTCAT----ACATGATGAGGTTAGGTGACCATCAGGACCACCCAGTAGATATAGATGAACTCAAGTCTGAATGACCCCATTCAGCCTGCTAAAGTATCAACAGAAATTATACTGCTTTGTGTTCAGGGGAAGCCCCCTCTTGGTCACCATCTATACACTTT-ACATTTTCTACCACTTTACCATGGCTTCCCACTAGCCTTATGGTTTCCAGCCCTCTGCTCTTCCTTGTTCTCA--TCAATTCCCCAGTCTCCCTTTTCCAGGGGATACCTTCAGGGCTCG-TTTCTCTTTGGCTCCCATG-GAGAGC---AAGTATTGCCAATAAGAGGTCCTTTGTGAGCTCTCCTGAAATA----AACTTTGAGGGGCCTTCA--TTCAGATCTCAAACTCCCGGGGCCTTTCCGTAAGTGTGCCTACACCCTTGGATATGGTCTAG-ATCTCAA-----TGAC---ATCTTTGCATTGACAA-AGATGCATAAAGTTTTAATTGTGATCTGTACGCCCTGGACAAGTTCTTAAACTCCT-TGtatgtttcctcatct-----------gtaaa------------------------atagcaATAATATTTGTGTCTAGTTCTCCAGTTTGTTGTGAG-----GATTAATCAACACATGTAAAGCAACTTTAAAAAGTGCCAAACTGAAGCTTGTAAGTCATTAGTTACCA------ACTTTACCATTTTATTACTCACACT----AAGGCAGGAAAGTATGTAATGCATTTTAGAAAGAATTTTATCATgaaggtaaaacttttgaagtgCTGCTGTTCAAAGGGTTCATCCTCAAATTCGTGAGACACAAGTGGACTCAGCAGCTCCCACTCACTGAAGTGCAGGATAATCCA-CAGTAAAA---ACCAGAAGGCCTGGGAGATAAGAGTTAAAGGGCTGGGGCGTCA-TCCAGTTAGCTGGTCTTTTTTAAACTGCCAAAATAGATCTCATAATTAGCAATATTTCTCCTTCCAGGATTTTAAAGACATTGAA------------------------------TAACAAATAGATGAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cttttaaataggaaaaacagGATaggtttttaataataaaaacagcattgaTATTACAGTCATTTTTCCAAAAGCTTCATTCCTTCCTACCT-CTAACCTCTTCTTCTCAAAGACGGAGATTGGCTCTGGCCTTCTGGAAAATCAGACCCATCCTCCACTGCAGATTCTCTGACTCCTACCATTGCAGGTCCCAGTCTTGGGGAGAGTTGCCTAGATGACATGGTGATTTCTAAGAAATAGGAAACAGGAGCTGACCTCTAGCTTACTGGCTAGTGAGTTTCCAGTCTCT--CCAGGAAGGAATGAA-GAAGCCAAGAGGAACCGAGTTTTAGAAATGGAGTTGGGAATCTGGATAGGCCAGGGACTCAAAAGTGTGCAGGGTGGAATATCAGAGAGC-------AGACAgctccaaagagagagagaagaatctGCACAGGACCTCCTAGAGTCTTCAGCTGAATCCTCCTTTAAGCCAACATGTAGGGGAGAGAAAGAACCATGCTA------CAGCAAAGAATTCCTTGTGCCTCACAGAGCTTGGAATTGTCCCTATTTCATCAAGCCAAAATGTACAGCCTTAAAATACACAGGTCAGTAGGTAGAGTACTCAAAAGGATCTTGCCTCATTAATGCAAGAGATGAAATTCTGCTCTAGTTACATCTAACAGAGTTTAAAATACCCAAAAGATCAAATTTTTTAAGTAATTATATCCTGAATAAAggtcaaaaatatatatagaaatataaaaatatctgacactcaggGGTATAAAACTCACAATAtcttaaatatgaaaagaatagTATCAGGCATGTACA-------AAGAAAACAACTCATAATGAGAAAAATGTGTCAATTACAACAACCTCAGCACTGATTCACATGACAAAGTTAATGTATA

a score=22830
s chr3           100455353 2321 + 160039680 aacaacaaagtcctaagcaaaaactaaaa-ttcagtagaaagtttagaaggtttgttcagaaagtcattcagcaaactagagaaagtatggggtgaggtagagacagagatagcacttctgattcaaaaccagagacatgagaggattagcccagagcctcaccatctaagtcattgagatcc------actaagtggaagggagatgtgattttaaagaaa-----atggtagcatctctcataaccaaaggccctgattttcagccttaaacagcccgtgaaggacccatcacacagttagtgtgaacactcatagacatagtcagatagatggacaca----------gcacacaggtacaacagacaaaaactcagag---caggacacttggtcatggaaggcttttaaagggcaggtatgagggagaaa-------------------agtcagtatgatgtcaagcttcctaaca------------gctaatgag---------------ctaaaggaaaatgACCTGTAGCCTAGACGTTTAGTGCAAAGGTAGATGAGATAGTCCAGCCCTGTGTGCAGGATGACTGTGTGGAACTCAAGGCCTTGAATCTACACCGTCTGTGAGAAGGTAGATGACACGTCACTGGGAGTGGGGCTAAGGAGGAAGCTGCTACTTGTAAACCAGGGTGCACAAATGAGATACAGACAGC-ACCAGTCAA-CCCTGACTTCCACTGAG-GGGGTTGATGACCTATAATTACTAGGGTCTGCTACAGCTCTGTAGTTTCTGAAGCGCCACAATGATAAATGTTCTACAAGTGTAGGAACCAGTCCGTCAGCAAGGAGGTGTCCATCCCAGAACGCCCAAAGGACTTCCTTCAAATA---------------------GGATTTCACCCTGAGGGTAGAGTGATCCAGAGTGCTTTGGGAGAAGGGGTGAGGTGAAGAAACTCAGTAAACTGAG-GAGAACAGAGGGGATGGTATTTCCACAGATAAACTACATTGACTCATTAAAACACCCAAGTGTTgccgggtggtggtggcacacgcctttaatcccagtatttgggatgcagaagcaggcagatctcttggttcatgaaaacccttgtctatagattgagcccaggctacaaagagaaaccc------tgtctcaaaaagcaaacaaaGTTCCATATACCTGAGTCTACAGAACAATTCCTTTTCGGTGATGCTCTCATTTCTCAAGGGCTCTGTAA--------TTGTCATGCAT--AGACCCACACGACCTCAGAAGGAGttggctggacca---------tcactgccacctcctctctggcctc---cctgctccagtctctccttcattatatggctatcatgggcaatttttccaaaactcaaatctaattggtcatgtggctgctcaacagcttcctgtagtctcccatt-tctagagtgcatgtagccaaGTCAGACTCGATCCTCCACACACAGCTCCAAGAACCCCACCTTCATGAAGTCCTTTCCAGTGAGATTCTAACTGTATCCCATGACTACACCTACTCATGCAACCACACTTGGGtatc--tttatatttcctagttgtctttgagcttttctgagcaggg--actgtt---tcctgtccatctttgagtctccagcagctTCCATGATGGTCATCTCAAGCACAAAGTAAAACACTCTTTGTT--------------GCTTCTTGAATAGTGATGTACGTTTCTTCCTTGTGAGACGCCTTTGCTCAAAGGAAGGTTCTAGGTTCTTGCCAATCTTTA-ACAAGAGCAAACATCCTACAATCCAT----TGTCCTCTGAGCAATTGAGTCCCCCCAGTTCTTCTGAATCACAAAGGCAGCTGTGTCAACAGGATAGGCTGGGAGCAGTGGGCAAGGCCTCTACAGATGGGCT-GATCAATAGATGCATTCTGCACATGAGGACTTTGATACCTAGTGAAGACCAA----------GGACCTGCAAGG---CCATGTGCAACAGAACAGGAGACTG---Gagtccattgtctgctgttgaaacagactatctg---------ggactagataatttacaaacaatataaatgtacttggcgtgtagctctggaggacagctatatcaagagcatgacatggacatttggcaaagccttttctgtggcatcat-------------------------------tgtgtggtagagggcaggaggaggccaatttcatatttataataaatccaccc------------actcct--gtgattatgacatcgctccactcatgggggcaagtgcatcatgcccc---cacctcctctgagaaaacgtgcctcccacaa-tgttgaacctggaatcaggcttccatcacaggag--tctggggacacattcaagccatagcaAACATGATCTCCTAATATCTAGGCCAGTGCCTATCTG-TGTCTTATGATGTGAAATATGGCTGAATATAAAGTGAGAgttt
s HiC_scaffold_1 110369424 2249 - 233722169 AGCTAAAAAGTTgatagcaaaaattaaaaatttacctgAAAGTATAGAA----TCTTCAGAAAATGattcataaaattaaagaaaaaa-gagacatgaGAGAAACAGG--------------TT----------GACTTTTGAGGATTATTCTAGAGGTTCAGCATCTGAATAACCAAAATCCTAAAcgacaaaataaaggaaacaaatg-ttttacagaaataacaaaggaaaaaatttccaTAATTGAAAAACATAACTTTCAGAATACAATGACCCACAGCAAATCCAGCTAGTGattatt-taaacacacacacacacacacacacacacacacacacacacaaaaaatgcacATGCAAAAtaga-ataaggtgagaatttcaGAACATCAG---AAGAGAAGCCTGAAATGGGAAGGGAACAGGAGGAGAGATCGCATACAAAGGATAGAGTCAGTAAAACATGAGACTTTTCAACAATGATTCCAGAGGCTAACAAAAAATGTATCaatattctaaagaaaaatgacttctaGTGTAGAATTTTAT-------------------GTCCAGCC--------AAAATTATTCC----AACATGAGG---TGAAATAAAGGCATGCATGTATGGGTAGGACCCATGT--------GTAGGGC---------------------------------CATGAACAATAACCAGACAACTACCTGCCAAGTACTG--TACTACTAAGTGGGGAAGACTGGTTGCAATAATTCGGAGATGCTACGGCCATGCTGGGCCCTAAGGGCCAAGATGCTCACTATTTCACA-GTTCATGGGATAGTCCCTCACAGAGTTGTTGTCT---CCATAATTTCAAAAGCATATCCTTAAGAAATATTAACTTAGACACTTTCTTGGTCTTCACTATGAGGCT----------------------GATGAGGCTTGAAGTGAGG------------CTGAGAGAGTGCAGAGTTGTGGGCATTT------------------GA---------------GAGTG-----AAGTGGAGAAGGTA---------------ACTATATAG-----AGAAG-------------------ATGGAG-------------GACAGAGACCAGTGCACAAGAAAAAACATAATGGTTgactgaaa---taaacaaatatttg-acACGTGAGTCTACAGAACAAATTGTTTTTGGTGGTATCTGTACTTCTAAAGGGCTCTATATAAACTACTCTGGCCTGAGTTCAGGTCTACAAGCTCTCAAGACATGCTGCCTGGACCACTGACATAGTCACTCTTCCCATCTCCCTGTTTCCAGTCCTACTCTGGCCCTTCATCTCCCACATAGTT-TCAACGGTTATCTTTCCAAAACTCGAATCT-------CACTTCTCTACTCAA-ATCTTTCAGTAGGTCCCCATTCTCTGGAGTGAACCCAGCCAAATGAGTCTCCTACTGCAGGATGAAGCTC-----------------TGAGGCCCTGTTTTGGGGGACTCTGTCT---TGTCATCACTTTCAATAAGCATG-----ACACTTgggcattcttttttatttcccagAAGCTCAGGAACTCTCCCACGGAGTTTCACTGGTAGATCTCATCCATGTTTGACTCTCCAGCACCTGACAAAGTGGTCAGGACAAGCACAtggtaag-catttttttttttttttttttttgcgctTACTAAAGATCAGTG-ACTTTTCTTC--TATGAGAAGG-TGAGCTCAGAAG--GACCACAGGTT--TACCTGTTATTACAGTTGAGCAAGGGTCCCACAACATATCAGATGTTCTCTGAGCAACTGAGTCCTTATAGTTTTTCTGAGTCACAAAGACCATTGTGGCAATGGGTTTGGC-AGGATCTATGGGCAAGTCCCCAGCAGACTGATTAGCCCAATGTCTGCAGTTTGCAGATGAGGTAACTAAAGCC-AGTGAAGACCAGTCCCTTCCCTGAAACTACTAGGCCACCACACACACCAGAATAGGACATCATCTTAGCACATTTTTGGTTACTGTAAGAGAATATGTAATTGATTATGTATTGAATAAATTATAAACCTta------tatttagctcatggttctgAAGGCTGAAAAGTCTAAGAGTATGGCCCTGGGACCTGG--AGGGCTTTTGTCCAGCATCATCCTAGGGAGAAGGCAGAAGGATAAGAAAGCATGAGGGTAAGAGTGCAGTAAGAGGCCAAACTCACTTTTATGACAAGTCCAGTTTTGTAATAATAAACCCCTCGGAGGTAATGACATCAGTTCACTTATGAGCACAG--ACTTCATGACTCAGTCACCTCCTACTATACCccat--ttcccaaaactgttacactgagggttaagtttccaacacatgaacttcAAGTGAAGCCGCCAATCCCTAGGAGATGTGAATTTCCAGCATCTGGGCCAATGCTTTCCAGCTCTCACACAGTATGCAGTAGCACTGATCATAAAGTGAGGGTTT

a score=60194
s chr3           100461455 2800 + 160039680 AGGAACAAAACAGAAGATGGGCC--------AA---GAGGACAGAAGGCAGTGT-GCCAATATAGCTGGGACCTCACCAATCAACCTCAGAGCTATAG--------GTACACGCTAGCAGGTACAACAGGCACTCATACGAGACCCTGAGAAGGCAG--AGGC--CAGGGGCAGATAGTGTGCAGGGAACAGGACTGGCAGCCTGTGTTCTACCTTGGTAAGAAGCAAGGTAAAGATGAGGCACTTAGTGGTGGTGAAGCCTACTGAAAATATTTCCAAAATGACTTTTTCTTtgtatgccggggtgtgcacaagtgaatatacacatggacactggagaacagcttagggaaggaggtcctctcctattgtctgggggttctagggatcaaactccagtgcagcaagcacctccatccactgagccctcttgctgaccccAATACTTGCCATCTAAAcagagtttggcaaactgcagcta-tgggccaggttgtcccacaatctgttggtgctccctctgtcactgagggtgggttttaagtggtggtggggaaaaccaaaaga---atattgcacaatacacgaaacttaaag-----------tctattgttgacagataatgttttatcaggacaccgctgaacccgactcatgttatatccctggctgcttccgtgacataacaggcaggtggggtggctgtggtggggatcccagggcttacaaagcctgaaatcttggctagtcggccctttgcagacaatgtttgcttgcgcctTGATCTAGAGAA-GTCCTCCTAAAGGCTATAATAGATTACTCATCAAATGAGTTTCCAGAGAGGTGGAGCCAGATGGTCCCTCATCCCACATGGCAGGGCAGCATCTCTCTACCTGCCCTTTGCCACAGAGCTAAGACTGTTGGCTTTACTCCAAGTCATTAA-TCCCTTTAGGGCAGGGGTGGGTCAG-------GAACAACACAGCCTTGTCAGGGAAGGGGAGCAGGCCCCCCACCCAATGGG-----GGGTGGGAACTAGCAGGTGCTCTGGGCCTGGCAGCAGAGGGGCATCTGAAACAGCAG-TTTGGAGGGAGGCCACGCCCCTGCCATGCAAAGTCCTCTTTGTTTCCCATCAC----ATCAGAAATGTGCACACCCCAGCAAAACCAGCAGGTCACACATTGACAAAAGGGCCTGCCACGCTCCAGCAGGAGGCTTCTAGGCTTTTGCAAAGTGTGGATTCTAATTCCCGGTACAGGGAAGTGGTTTGGTGAAAGCACAAAACAGTTCCATTGTGTAGTGAGTCCTCTGGAGGCC----AAACTGGGTCTACCATAATCCACTGACCCCCAGCACAAGGGCTGAGGAAGTAGGACCGAAGTCCTTGGGAACA--GTGAGTTGG--------CAAGAGAGAAGCTAAAAAGATGTCTAGGGAGAA-TATAATGAGATTACAACCCACGAGCCAACGGGCAACAGGGCAGCCTGCCAAGACAGAGCT----GGTGCCCATGGCCTCCAGGCCAGCAGCTAGGCCTGGTCCACACCACCTTGGCTTTGGGTATAAAATATCAGCCAAGGTAagccgtgtggtctgtggcattttgctcaacatctctgatccacgattcttcttctgttaagggggtaGGGGGTGGAGAAGAGAGAAAGTCC-------------------TCATGACCATCAGCCATAGTATCTGTAGGTCCTTAACAGTGAGTCTCAGGAAATC---ATAGCTAGTATTCACCAATACTGACTTCCTGGCATCCAACAGAGCCCAAGGATCCACTGCACTTCTGTGTCGGTGCTTTAGAATC------CGCTCAGGAATTA----AACTCTCTAAGAACACTGTGAA-CCACTGAAGGACTA------------------------TCAAGTAACAGATATA---TCTGAGCTGT--------------------TTCATCCTTAGTAACTCTGAGATTGGCATCACCACTGTCT----------------ACAGCTGAGCCTGGGGCCACCATGAGAGCAGGAGAGCAGCCAAGGAGCATGCTGGGATTAAACACCGGGCTGCAAAGCCC-----CTCCGGTCTGGTCGTCACCCAACCTCCACCCTCACCTGCAACCTGCATTCTCTTTCACCCAGCTGGCTACTGCCAGGCACTCAGAGAATAGTGT--------CCCTTGGG--CACACAGCAGAGAGCTGCAGCAGGGAGCCTCGGGTTTAACATTCCTGCCCTGGGGGGAGGGACCTTGCCAGATTCAGCAGCATCCAAAATT------------CAAAGACTCATTTTCCTTCCAGTAATA----------ATGGAAAATAATCCTGTTGAAAAGCATGCCTTCAGAGCTGGGGGGCGGGGGGAGGGGCGGGGGCACT--TCTGTCCACACTCAGATCCTATGCAGGCCATGAAAACTGATCTGAATGTTGGGGGGAGGGGACATTCGGCACAGGGACAATACGTACATGCAGCTGACCTGAGACCAGGGAAGAACCACAGAGGCCTCTTTTGCATGGGAACCTGGAGTAGCAGAAGTGACAGGGCCAGCTGTGTGTCAAGCTGCCACTGCGCCACTCACAGCCT-GGCACTGTTTCC-------------CATGGGGGCAGTGTTAAAGATTGCCTCCAGA---------GCCCCGCTGTAGTGTTTACTTACCGATAAGAC--CACCAGCTTCCACTATATTTAGAGCAAGAAAATCCACAGGTGTTTGACTCCAGGAACTGCTTTTGGGTTCTG-----AGCTTTCAGAATGCCCTCCCTTCTCAG-TTCTCAGTTCTGG---TGCAGGTGAGCTGGTTTCTAGCAGCTGCAGACACCCACCACACACACCTGTCCCCCTCTCCCCCAGCCTACAGGTAGTCT-AAATACCTGTGTGTGATACA--TTCTTGGCTAAGCGAATGGAGTGGGGGACTGTTTCTATTTTCCATTTCAATTCTAATTTAAAACTTAATGCCA
s HiC_scaffold_1 110374488 2749 - 233722169 AGAGGTAAGGCAGAAGACAGACCTCAAGGAGAACCTGGGGACAGAGGGGAGGGAAGTCCTTGTAGCTAGAACTTCAACAACTAAATTCAGAGTCACAGTGACAGCAACACATGCCAGCAGGTATAATAGGCAACCACGGGACATCCTGAGATGGCAGTTAGGTGGTAGGTACAGGT--------GGCAACAGGACTGGCAGCCTGTGCTCCAGCTTGTTAAGGGAcatggtgggggtggggca----------------------gaaaGCAT---CAGAGAGCACTTTTCTGTG-------------------------------------------AAACAGC--------------------CTGTCATCTAGG--------------------------------------------------------------------------------ACAGGGGCTGACAAACCACAGCTGGTGGCCCAAGTTAGTCCTGTACTCATTAACATACAGTCTGCCAACAGGAGACAATTTTAGATGCT--TGGGGAAAACCAGAAGACCAATATTTCatgatacatgaaaattaaatgaaatgaaaattttagtgTCCATGGATCAAGTTGTATTAGAACACAGTCATGCCcacttctttatatattattg-ctgtttttgagATGCAACAGCTACATGGGATGCCTGTGGTAGATTCCAAATGATCTAGAACATCTAAAATCTGAGCTATACGGAcctttatagaaaaatattgCTGAC-CCTTGATCTAGAAAACGTCCTCATGATGTCCCTGGCAAGTTATTTGTCTAATTCACTTTCATAGTGGTAAGGTCAGAAACTCACTGACCCTGCATGGCTGTGCATCAGCTCCTCACTTGGCAAGTCCTGCAGATCCAGGTCTTCTGGCT--ACTTGACATCACCACCTGCCCTTGGCATAGGGGCAGCGTAGTCTCCCAGGAGAACACAATCACGTTAGGAAATGTGAGTAA-CTCCTGATCC--TGGGCAGCAGGCTGGGGGCTGGC------TCTGGGGCTCACTGGTG-GAGCCAGCTGAAACAGCAGCTTTTGAGAAAGGCCACTCCCCCGCCATGCAAAGTCCTCTTTATTCATCATCACCATTATTAGAAATGTGCACATCCCAGCAAAACCAGCAGGTCATACATTTACAAAAGCGCCCGCCACGCTGGAGCAAGAGAGTTCTGGGCCTGTTCAACGTG-AGATTCTAATTCCTGGTACAGGGAAGAGGTTCAGTGAAAGCACAAAATGCCTTCATTGTGT-GCGAGCTTGCTGCAGCCCTCCAGAACAGTGTCTTTCATTCTCTGCCTACCCCCAGCA-GAGGGGTGGGGACCGAGGG-CGAAGTTCTGGGGGACAGTGTGAGTTAGCACTACCTCAGGAGGGAAGCTAATTAGTTGTCTAGTGGGAACTGTGATGATACTGCAACCCCCAGGCCAAT--------GGGCAGCCTGCCAAGACAGTGCTGACCGACACCCTTGGCTCTAAGGCCAGCAGCTGGGCCGGGTCCACACCATTTTGGCCCTGTGTGCTTTATGGAAGGCCAGGC-AGCTTTGTGGGCTGAGGCATATTGCTCAACCTCTCTAAGCCATGACTTCTCATCTGTGGAGTGGGCC-----TGGAAGGGAGAGACCATCCCACTTAGCTGGCTAGACTGTGATGACCATCCGCCACAGTATAGGT--GACACCATTAATCAGCCTGCATAAATCCCAATAACTTGTAGTTGGTATTATTTCCTTCCTGATACCCAATAGGGTCAAAGAATCCACGACATATAAACATTGGGGCTTTAACATTTAGGAATGCTAGGAATTTAGTTTAACTCCTCAAGAATATTATAAATTCCCAGAAGGAATAGAATATCTACTAATGTATGCATGTGTAAGCACCTGATACAGGGTTTGTGCTTTAGAGAAAACAGTTTTTGCCCTTCCTTCTTCCTAACTCCAAAGTCAGTATTATCACTGCTCTGGACTCATGAGGAGAATACCTGATCTTAGTCAGCTTGTGAGCTCATGAGAGAGGAGGCGGTGCA--CTGTGTCTGAAC-TTGGGCTCCCAAGCTCTGCTTCTCCCACTGGCTCACTGCCCTACTGCCCCCCGCAGAAGGGATCCACACCTGGGGTC------CTAGTCTCCAGCTGGCACTCAGAGAAGAGGCTGAAGTATGCTCTTGGGGCCACAGAGCCCAGAATTGCAGCAGAAAGCCCCCGGGTTAATGTAC----------GAAACGAGCTATGCTTG-CTCAGCCATGGCCAAAATTCTGCAGGCAAAACAAagaatcattttcctttcagtAATATATAAAGAGGGTGGAAAACAAGCCTGCTGAAAAGTGTGCTGCCAGAGCTGGAGAGAGaaagga----------ctctgctctgtccacACTCAGATCATGTGAAGGCCTGGGGAACTGAGGTG-----TGGGAATGGGAGACAAAAGACACAGGGATGACAGGTACACCAAGGTGACTT---------CAAGAACCACCAAGGGACTTGTGGCCTGGGAGCACGAAG-AGCTGGGGTG-------TGGCATAGCAGCAAATTGCCAGCCAGCCATTCTGGGCCCAAACACTGCTTCTCCCAGCCTGGCTGCACAGGAGCCAATGTAAAGATTCTTTTCATACAAGTGTTTGCCTCACTGTAGTGTTTATTTACAGATAAGATGACCCCAACTTCTACTATATTTAGTACATGAAAATCTGCAGGTGTTTGACTCCAGCAACAGC-TACATGTTCTGCTACTAGTTTTGTGAGTACCCTCCCTTCTTGGTTTCACTGTACCAGAGCTACAGGGGAAGCAGTTTCCAG-ACTTGCAAAAGC------------CCTGT-------GCCAACAGCTCCCAAGTAGTTTAAAATACCCCTATATTACATGGCTTCTTAGTTAAG-----GGTTTAGGGAAAAG----------CTGTTTCAAGACTAATTGAAAATTTCATGCCA

a score=274912
s chr3           100464859 15815 + 160039680 [encoded data, 17856 characters]
s HiC_scaffold_1 110377266 16004 - 233722169 [encoded data, 17856 characters]

a score=132776
s chr3           100481040 12215 + 160039680 [encoded data, 13511 characters]
s HiC_scaffold_1 110394263 11421 - 233722169 [encoded data, 13511 characters]

a score=64771
s chr3           100494203 2318 + 160039680 CTTTGCCAACTTT---TCATTTTCTTTCATTACTGGCTAAGACACGTTGTCAAGCAAGGCAGAAGACAGCAGGAAAGAATAAGTTCTCAGTACCTTTCTATGTTTGCCCTAACTTTGAGAACCCC-TATGTCTTACTGGAGGATTAAAGT-TTTAACTCTCCTACTGGGAAGAGAGATTTCATGGGTGTGAATTGTTAATTGATCACCTC-----------CTAACCGCTGGGTCAACA-------------------------------CTGTCGAATCAGCCTTCCTCAGTGC-GGACACTGCTAACCCAGGAGTCCGTTTCCATTAGTGGCTCCTGCTGTCTCCACACTCTTTGCCAAAGAAAGGGGAT----GCCCTGCTTCTGGGAGTGGTCCATTCCCCTAACAGGTGTCACGT-TCTGCTCACACCTGGGTCTTTCAGTCCTCCtgtctgtctggatttttagtcttaagcactcaaaagtgactttggctggcttaagcaaaatggaatttatttaaaat-ctattaaggggcccacagaatcatgctactaggcatgtggcctaaaaggccaagcacaggataggtacaggagacgtctggaca-------tcatggtagatctaggccacaggtgctgctgctgaggctgctgaccctgaaaactggatgcaattgtccccggtacc------------aactggtaagcagaatctctgtgtgaatgtccctgttgcag----gccatcaccagcttctttctcttcataatctgggattggaagatgcatccgattaaccc--cacagacaaagaatgccagc---------ctgtggg------ttagctgccgtttctgtct-tcactttgggagccaggttctgcctctcaaagcagaaagttctccagaaggaggaag--ctcacgtgttgg-tggccagaaTATGTTC-TCTCCCTTCTAGCGTCACGCCCAGTCTCCTGTGAGGTTTGTGCAGGCAGTTTGGCACCCTGTCATCTTCCTGACTCTGGGACACAA-TGCAAACAAGTTTCTGAAGTCTTGAGCCTGA--GGCCAGGAAAATGGATTCTTGAGAAGTTTCTAGGGTGGAGGCCATCCAGCTGGCCCTACCTTGCTATACTCCTCTCTTGGGCAG-TGGCACTTTTCCTCTTCAAAATTCTTAGAATAGGCACTTAGTGGATGTCTGGTGGGAAGAAAAGGGGAGGGGGAAGGGA---------TTTGGATACCCACCCCTTATTCAAGTCCGGGTTTCCATTCCTCTCTGCTTGTGGTGTCGAtctttccactgccttgggcctctgtttccccatctgttaaaaaaagaaa--------atct-atcttggtcactcctgttgcctccagctcAGGTAGTGC---------------AGGGCACAGGGCCTTGCTGCCCAAGGcgctttgcttcgcttcgcttcgcGGGGCTGGCTACCCATAATGACAGTGTCCCGGGGACGGCGCTTGTGTAACAGGCAGATTTACCAAGAGGGGACGACTGTTTGCTCAGCAGCTGAGCAGTCTATAATTAGACTGTCACAACATCAGCAAAAGTACAGGATCAATGTAATCAGAGAAGAAATGGAAAAGAACGCCGCATCAGTCAAAGCCTCCAGTGGGTCCCCGTGGTTTCCGGAGCACTAATCGCCCGGGTGGGGCTCGATGCCCTGCTTGTGGGTTTCCTCCTGGGTGAAGACAAGGTTTGCTTAGGCAGACTAGGCCTGCCCTTCTCAGCCACCTGGTTCATTTCCACATCTCTGTCCCCCTCTCCTCTGCTCACTGAG--------------------AGCAAGCAGGACTTGCAGGTCAAACTCATGGCTGAGACACGACTGATCTCCACCATATGCGCGGGTCGGTTAAGTGGGAAGGGCTAGCTTCTCTAACTCAAagattcctaggttccatctcagccctgcgcaaccagaagctgtgggatgagcaccaaagacagtctctgtgtggcacattccaggtgcttactatgcaaacgaaaagctgagaactgctAGGCCATCTGCTGGTCCCAGCTCACAGTGGACTGGCCCTCTAGCGCCTACTGGACACCTGGGTGTTTCTAACAGTCTGA--CAGACCAGCCAAAGGTAAAAAAACCTTTCCAAGCCCAGGAATGATAATAGG---CTTATGTCCCTTTTAATTATCTTAAGAATCCCAAGTCCCAGACATGTTTATCTCATTAATCCCCATGACACCTGAGCCAGGGAGTCGTGTACAGTACCTATAG----CTTCCACCAAAGTAGATCAGGGTCACATGTGTCCTGAGATAATTGGGATCTGGGGGCTTGGAGCCTTTCCCCAGCCTGATTCTCACAGAATCAACTGGATTTTTT-------TTTTTTAATCTGTGTGATTTATTTAGTAAACAGGTTTTTTATTTGTTTGTTT
s HiC_scaffold_1 110405889 2316 - 233722169 CTATGCTGACTTTATGTGCTTTTCTCACATTAATGTC-AGGACTGCTTAGCGAGAAGTttggaagaaaggagaggagggtaAATTCTCTACACCTTGCTGGGCCTGCCATCACTTCTAGTTCCCCAGATGTCTTATCTAAGGTTTAAAGTCTTTCAGATATCTTTTGGGAAAAGAAATTTCATGAGTGTAAATTGTTAATTGTTCATTTCATGCAACATAACCAAACATTGGATCGGCTTGGAAGCTGCCATATATTTTTGTCCATGCATCTGTGTTACCAGCCTGCCATGATGCCTGAAACTTCCAATACTCAAGTCTAT-----------------GTTGTCTATATAGT--TTGCCAGAGAAAAAGGATAAATGGCCCACTGCCAGGAGCAG-CTTCTCCACTGATAACCCTTAGGTCTCATTTCATACATTGATCTTCTAGTCTTCCTGTGCATCTTGAGTTTTAGTTGCAAGCAATCAAAATAGACTC-----GATTTACATAATGTGGAATTTATCTAAAATGCTGT------------------ATACTATGGAGCA------------------------------------GGATGACTGGACAGTGATTCTGCTACCAGGAGCAGGCCTTAGCATATGTCACCG---CTGCTGTCTATAGAAATTGGATATAACTGTCCCTGTCACTGCTGCCCTCACTATTTGATCATCAG----TCTTTGCGACT--CTTTGTTACTGCTTTTCCAGCAGCAGATTCTG---ATTCAAATTCTGGGGTAGACAGGTACATCTGATGAGCAGGGCCCAGACAGAGTGCACTGGTACACAAAAGCTGGGGGAGCAGATTGCCTGTTGTATTCACCTGTGACCTTGTAAAATGGGCTTCACCTTATAAGGCC--AGGATCTTCAAACAGAAAAATGCTTCAGATATTGGGTGACCAGAATATGTCCCTGTCCCTTCCAGGCTCACACACTTCTCTCTGTAAGCATTGAGTAGACAGAG-AGTATACGTTAATGCTCTGAGCTCTGGGACTCAAATGTAGACAAGTTTCAGAAGCCTCCGGGTTGGAGGGCCAGGAAAATGGATTCTTGAGAAGCTTCTAGGATGCAAGCTGCCCAGCTGGCCCCACCCTGCCATATTCTGCTTTTGGCTGGGCAacacatttcctcttcaaatttcCTAGAATAGACACTCACTGGATAT--gatagaaaaacaggaaaagagaaaagaaaaagagagcccTTACATAACCACTACTAACTCACATTTCAGCTTTTATTCCTAGCTGCATGTGGTATTAATTGCTTTAATACgccgggcctcagtttccccatctattagaaaaacaaacaaactgcacCTCGTCTGGCTCTCTTCCAGTGCTTCCAGCTTCAGCAGTGAGTGTCAAGGAGCTGAAGAGTGTGGGGCTGTGCTGCCCAGGGCACAT---------------CATGGGGTTGGCTGCACATAATGACAGTGTCCCAGAGCTGGCGCTTGTGTAACAGGCAGATTTACAGAGAGAGGATGACTGTTTGCTCAGCAGCCGAGAAGTCTATAATTAGACCATCACAACATCAGCAAAAGTACAGGATCAATGTaattagagaagaaatggaaaagaacacAGCATCAGTCAAAGCCTCCAGTGGGTCCGCGTGGTTTCCGGAGCACTAATCACCCAGGCAGGGTTCAATGTCCTGCCTGTGGGTTTCCTCCTGAGTGATGACAAGGTTGGCTTAGGCTTACCCTGCTGGTCCCTCTCAGCCACCTGGTTCTcagcctcctctc--tcccttctccctctgctcaCTTGGCCTTAGGGATGAGGGGCCAAAGGAAGCGGGGTTT-CCGCCAAAACTCATGGCCAAGACACCTCTGCTCCTCATGCTGTGCATGG-----------GAGCAAGGCCAGCTTCCTTAACACA--------CAGGTCTCATCTTAGCCTTATTGAATTAGAAGCTCTGGGGATAG-ATCGATGGGA-TCCACATTTAGCACATTTTCAGAGGAGCCTATAAATGCTAAAATCTGAAGACT-----GCCCTCTTCTGTTCTGTGCCTAGTGTGG----------------TTACAGCAGAGGTAGGT-----CAGCAGCAGGATTTGGGGCAGCCAAGGTTAAAGAATCTGTCAGAAGCCCAGGAATGATAATGggctccttattttctttttaatcatgtTAAGAATTCCAAGCTGCAGACGTGTTTATCTCATTAATCCACATGACATCTGAGCTGGGCGGTAATGTCcaatgtcttcagtttctttccacCAA---GTACCAGGGCCAGGTCACTACCCAGAAGATCTGGATCTGAGGATTTTTTGTCTTTCCTAATCCCAGCCCTCATAGAAacaactgaattttttaaaaaaacttgtgaACTT---TTATTTACTTCTTAAAC------CTTGTGTGTTTGTCT

a score=16763
s chr3           100502004 2548 + 160039680 TTTTTAAAGTTACTGGATAATGA---AACTGGAGTCCCAAGGT-----GACAAAGACAAAGGAAAGGTGACCCTCCAGGATCTAGGATACAATTGGGGAACTAAAGTATGT--TGGTCATACTTGGGACCAA-----CACACTCCCCACTC------------------TATGATAGTCAATGGC-TTCTCCTTTCAGACCACATCCCTAATGCTTTT----------------GTTACCTAAAATTCAAACTCACACACAGGATTCAGTGGAGAG----GGTGTTAGCAG---------------------CATGTTGGCAT-------GTTGGCTGTCCCTCTGCTACATGTGATCAGTTGAGGGGACAGAGGAGGTCAGGTGACAGAGTGCAGAATGGATG---CAGTTATCCAAAGAACGTCCTAGGGACTTGTTCCTCCACAGAGGTAAGCCAGTGCCTTCACAGAAGCCCCAGGCCTCACAGTTGGACTAGCCATAGGTTTTCAGGGCATAGCAGACTAAAGTGCTACATC--------------------TGAGGTCCTCGCCAGCCTGGGACATAG--CTTCCCACTTGTTTTATTTTGACTAGACTAT-----TCAAAGATTCTCTCACATCAAGCTTGAGGTCCTTAAAGCAAAAG-----ACTGTGGTACTAGTGCCAGTGAGCTGTCAAGGCTTGTCGCCCAACCCAAGGGCTTTGTTTTGTCTGACCGAATCTGAAGTAATCACAGGCCTGGTGTTCTTAGACTGTACAGAGAAAATTTTGTAACCTTTTTGACTA-ACTTCGTGGCCAGTTACCCCGGG----GTGCAGGCTTCCTGTTACAG-----------GGTTTAGAAACC--TCTCTGAACCTTCTAGCAGCACACGGCTACGTAAACAAGGCTGAGGTCACACCTCTCCCTCCTTCATTTTTCTTCTTGGTTTtcttattagttctttgaaattttcatacagtttatgttgatcatggtcctccctctcctcaactcctcccagatccacatacctcccttccctacATCATTAGAAGGTAGTGGTGGGGGCTGGGATGGTGTGGATAACTGAAAGCCACAGAGTCAGGGAATGGCTTATACTATGTATGTGTGACAGGAGACACTGAT---CGTTGTTCGTAGTCAGGACAGTGGCTCTCTGTGATGAGAAAGGATGGCTCTGGGCAG------------AAGCAGG---AGAGCCTTGATGTAGGGTCCAGTTGGTTCTGACGTCAGTC-CTTAGAGAGAAGGGCTTA----------GAAACAGTGCTGAGC------------------TCCCCTGGGT---------------------GGTGCTCCCACTGATCAACACTAAGTTGTTGCCTTCATTTAGGACAGGGTTCTAAAACCCTTGAGGCCAA-GGGAGAGCTGGGGATATGTATCTAGAAGACACCTTTTCCATGTCCAGATCCG-AGACTCCTATCCTGTAGTTACA---TGGAATTCCAAAATGTAGGGACATTTTGTCTAAATGAATACTCCTGGTCTCCCCATATTCTGATCCACAGGACCTCATCTCAgggctgggaggaacttagttggtagagcgcctgcctagtacatgtgaagacttaggttggatcctcggttctatataaaaaccaggtatggtggtacaggctagtagttctaacaccaggaaggtgata--gttgaaagatcagaagttcaaggtcatctttgactccataataagttcaaggccagctacggctgcatgagaacctCCCAAGGCAGGGTTggttcacaatctgtctctgttatttgttttctgtactgccttcggcaacttcc---ttactctgtgtctctattccttctgctgag--atgggaatacgaatgtcagccttgtcaggccattgtga-----aaataaaGGGCCCAAGGTGCTTCTGTCTGCAAATGGCAGCAACAAGCCACATTACTGTAGTTACTGATTGCTGCTAC----GAAAGGGTGGATATCTGTGGTAAATCTACATTCATCAAAG--GATGCTTTTGTAGGAATGAATGTTAACCCCTCTCTCTAATCTAGACAACTTTCAATCCTCCTGCCTCAGCCTCCAAGAGAACAGGCTAGTGCCACGAGATTGGGTAACAGTAATTGTAATGTCCCAAGGAAATGCTAGCTTATACTGTCCCAGTCAGAAGCTTTACCTATTAAATAGTCAACC------CTCCCCCACTCACCCCAGACACACTCAAACATTCCTGCTTTCGTTTCAAATGGCTGAGTGCTATGCTCAGTGAACACCACCTTTCAG------GACCCTCAAACAGCG--TGTCAGCAGGAAGCCTGTCCCCCGCATGG---CTACAGCCGTTCAGATTTTGCATGAAAACACTGTGTATGCTCTCAAACCATAGGCTTCTAGACTCTCGGGTATTGCTCTATGAACCAGAATCCAGCTGTGGGAGAAATGAGATCTCCGTGTAGTCAGACACCTGGACTTTCTGAGAG-ACGTGTCAGCTGTCTGGCTAGTTTCATGTAGGTTAATGATGGAAGCTGGCTGCTTTATGCTGAACAACT--------CTGCATTTCACTAAGCAGAA--TTTATCTCCAAGGATTAGGGG------TTCAGATCCTCTAAAACAACTGTCC--TTAATGACAGTAAAGGTTATTATGCTATC--AGATGTCCTTTTAGAATAGGTGTTTCTCACAAGTGGAATTCAGAGTCACCAAGTGTCTACCTCACTG
s HiC_scaffold_1 110411557 2273 - 233722169 tttttaaattagtaggGTAATGAGGCAATAGGAATCTCAATGACTTCAGATGAGAACAAGGAAAAACTAACCTCACAGTACCTAGGATGTAATTTGGAAACTCAAATGGGTCATGGCAGTCTTAGAGACCCATTTTTCCCATCTTCCTCTCAGTGGCATATTGCTGATTTCTGGTAATTAGTGATATTTGACTACCTACCCTCTTTTCTAGAGTCTTTCCCACACAAATTCCCAACTACCTAAAATTCAAGTTCCTACACAGAATCTGATGGGGGAAGTTGGTTTCAACAAATTTATTTGAACATATATTTTCACTCTGGCAGCTTTAAAGTTGACTGCTCCTGAGCCAAATATACTCAGATGAAGG--CAGAGG-GGTAGGGTGA--AAGTGGAGAACGGGTGGTACAG-------GAGCAACTCTTAG---------------CAGAAGGGACAC----------CAAGAGACTGAGGCCT-----TGGTGCTGACCTTCAGTTA-CAGGG-ACAACAGGC-AAAGTGCTTCTTTGCCTACCACTAGCGGGATGATGCAGGTATCATCAGGCTTcagcttctttctttccccctttctCATTTGGGCACAACCATGCAGGCCAGAGGTCTCCTCTCATCTAGCTGACATTCCC--AAGCAAAAGGGATCATTGTGCCTTTGGAGCCCTTAAGCTGCC------TGTCTGCCAG----AGGACTTGTTTTTGTCTGAAGGAATCTAAAATAATCATAGGCTTGGTGCTTGTAGACTGTATAAAAAAGGTTTTATAACCACATTGGCCCTAATCTGTGCCAAATTACCTAGAGCACAGGGTAAGATGCCTCTTGTGGCCTGGGGTACAGGCTTAGAAATCTGTGTCTGAGCTGTCAAG-ATCACAT--TCATGCAGACTTGGGTGAAGTGACACCCTTTCCTCCC-----------------------------------------------------TGCTGATTA----------------------------------------------------------GGAAAAT--TGGTAGGGGATGGGACAACATGGATAACTGAACATCACAGTGGTAAAGGGAGATCCATCCTAAGCCCATGACAGAAGATGCTCTGGTAGACATTGTTCTGTGTCTGGACAG----------------GAAGACAAGGCTGAGGACAATCCTTCTCTTACAAGGAGGGCAAGAGTCTTGTTTGCATGTTGAGTGAATGTTGGGATCAGTCACCTA---AGAAGTACATATCTCAGATGGGAAATCATGCTGAGCTCTCACGAAGAAAGCCCTTCCCCTGGGTCTTGGCCTGATGGAATAAGAGAGGGTTCCCGCCTGCAAGTGTTAAATTGAGTCCTTCATTTAAGACATTGTTCTCTATGCTTTGAGACCACTGGAAGACTTGGGGCCACATATTAAAAAGATATATTCCTGTATCCCAAATTCGAAGGCTCCTATTAGGTAGCTCAGGGTTGGAAC---------taggagaattttattttgacaagCAACCCTGGTA-------ACTCTGA------------------------------------------------CCTGCTGAGT-----------------------------TTTT----------------------TAGAGCCTAG----TCTAA----AAGGAGGTTACAGTGTTGAGAGAGCA------------------TGACTCCATAC-----------CCAGCTG------------------------------------------------TGCCACTTTTTGATCGTGTAGTCTTTGGCAGCTTTTCAATTTCTCTGTGCTTCGGTTCTCTCTTCTGAGAAATGGGGATAAGAAACTCAATCTCACTGGGCTATTAGGAAAAACAAATGTAGGCAGTTAGGTGCTGCTCTGAATGCATGGTGATAATTAGTTGTGTTA----------TGATTATTGTGGCTCTGGAAAAGGTAAACATAAAGACAGAGCCTGTACTTGTGAAAGTTTGTGTTTTTGCAGGAATGAATGTTAATTCT--------------ACAGCT-------------------------------------------------------------------------CTGAGGAAGTGTTAATTTAGGCTAT-TGATTCAAAATCTTCACTGATAAACACATCTACCAGTATACACCTCCACG-----TGGCCACACTTacatccttcttctttctcttttaactgC------ATAAACTCCCAGTATTCCATATGCCTGTTTGCTGCCCCCCAAAAAACAGCTATTTGTAGAAAGCATGTCCCCTACATTGACATCACAGCTGTACAGATGCCCCCCGCAAGTAC--------CCATTAAGTCTTAGACTTCTGGTTTTTCAAATAATATCCCAAGAGCCAGCATCCATCCAT-TAAAAAATGGGGTTACTGTGTTGTTAAATATCTGAACTCACTGACAGTACAAATGAATTACTTAG-----TTCAT-------------------TGGCTACTTTATACCGAGTGTCTGGCAGTTCCCAAACTTCACTAAACAAAAACTTAAGCTTGGAGGATTAGgaagttactttaaaattttccaaagc-aCTGTTTTATTATTAAGAATAATGATTATCATTGCATCTGAAAATTCCTAT----GTGGGCAtttctaataattaaaattctgAGTGACCCAACTTATACATTATTG

a score=53796
s chr3           100505309 2763 + 160039680 gacactgggcaagttgcttctgttctctgagcatgagcttTGGTGTTCACATTCATACAGCAGAGCATGTAAAACCCTTTGAAACATGATCCTTCT-----ACAGTCTGTACATCCAGGTGGAAGGTCAAACTTTGTGGTTCCCTGAAGTGATGCTTGGTCCCACTTCCAGTTGAACAGACTCTAGTGAGCAGTTAGAACCCATCTTGTTGCCAATGACCCAAAATAAAATACAGTTTTATTTGTTTTGCACTGAGCTAATTCCCCAGGGCAACCATCCAAGCACATTGGGGTTGGTGGTAATGGAGAAAGTCCAAGATGAGGATGTAGTTTCCAGAATCAAGAACATTAGTGATGTTTTCCTGATGCCAGGACAGTGAATGGCAGAGTGGACAGCTCCGT-GGACACCCACTTGTGTGGTTACAGACCGCCCAGCC-TGGCCTG--CATCTTTTGCCACTATGTTGACAGATTCTAAAATTACCTAGCATCATATAGAAGAAACATGGCTGAGAGGGGCAGACCAGCAGCC-TGGGTCCATTCCA-CCACCATGTCCCTGCTCTCCAG-CGATATTCAC-TGAAGATCAGTGATGGCCTCTTAGTGGCCACTGGAGGCACATGTCAATACCAGCCAGAGGGTGTGGGTTGGCCCTGGAAGATGGACTGTCTCTTC-ATCTAGCCTCAGCGGGTCCCTCTCACATCACATAGATATGACAA------CCTAAATCTAGGGTTAGGTTTGCTTTGGTCAGACACA--------------------------------------TTTATCTCTCCACTTATTCCCTTCAGGCTGAATCTGGCCACAAACTCGGAG----------AATGCAAGGGGTTGTGT---------ATGTTATTCTCAGTAGTAACTGGCAATTACTGTGTACACACTGTGCACTGGAGGGACTACCAAGGCCTACTTCCTGAAAGTCAAATCAATGGTTTCATATGGtaa------gaaaata-------------aatcagagccacatagtgaggaagtccaggaatcaggattcaagcttaggccacctggatctagagCTGGCCTCAAAGGAGGAAATGCACTTTCACACGTGCAGAGGCCCCTCCAGA----CACCCCACAGCCTCTGAGGCACA-----CATCTGTCCTGGGAGCTTCATACTGAGACTGAGAGCAGCAGGTCTCTCTTCTTTGAGAAGTGTTGGCTATAGATGCTATGTGACCTGTTCTGTTCCTCTCAGTCCTGAAGGGTGTC--------------------------------CTGGCCAGAGCTCCTATTAGTCTAGAACCAGTTCTGGAAATTGTCCCTGGG-----CTGATAACGTCATCATTTCTGGACCCCACCTCACATGCCGGAAATTAGAATCCTCAGCAGCTAGAGAT--TCTTGGATAGCCTCTGGCAAGGG------------------------------------------ATGTACCATTTAACTGCCACAGATCT--GATAAGaga-----aaagtcagactttat-----ggagcctacgtgagttaagaaacgggttctagaaccaggcagcctttcagactagcatgac------tggcccagcacaagaccagttaggtttcatttataatcagagaagagggagtgacatctggaaatcattccattgggtacaaccagaatttgccttgtatggaaccactgtttgatctgttggcagtctgtgattggctgaaaatcaactgatacgattggctgagagtcagttgcctggttacaaagataagctggtggcttaggttacaggttgtttatacaacaggctagaatacagtccacagagtagggagactgctttgggtcaaactttatCACTCAGTTATAGAGGTTTGTTTAGGTCGGCATTCTACCTTTTCCTGC-CCTCTGTGCAT-GGATCCCTTCATAAAAAGAG-----TCATAACTACTTCATCCACATCACAGCTTTATGGTGAGGGTAAA---GCCCAGCAAGATACATGACAAC--TTTTCATGAG----AATTAC----------ATGACCCTTTCTCGACTGC-------CAAACT--AAGAACTTAGTGCAGATTCTCACGTGTTCAAAT--------GTCCAGGGAAGTTGGGGAATGGCTTAAGATCCTATTTGTTTAGAAACATCAGAGCCTGGATTTATTCTTGGCTCACTATGAGTCAGAACTAACGACTCCTCTTTCCAAGTTCTGGCGTCATACAAGTGCAATGTAATGATGACCTGGTACCCACAGTGAGATGAGCCCACATTCTAGAGCTCACCACAACACAGAAATTCCTGGCAGAGGCCTGAGAAATGCTGTCTCTGTGTGAGGGGCTGAGGATTACCTCCTGCAATGGCAGCTACCACCAGAA--AATTCAGTGTCTTGCTTGCCTGTGGGTGTCACACCAAGGTGACTGGAATCTC------------------CAGCCAAACATGAGGCTACAC---TGGGCA---------------------------GTGTC------------------------------------------ATCAGTGGCCCATATTTCCTGGGGTCAAAGCAACAGCTCCTCATACCAGTTTTATCAC-CTTAGCTTACAAAGACTTGGCCCATCCCTGCCCTACAGCCACACTG---TAAGAAAGGCAGGTTTCAACTGTCCCAGCCCCATATCAAGAAGTT-AACAAATATCATGAGAGACCAGACATGG------GTATT--TAAGAGCCAGCTCATAGTCCC-AGAACCATCATTCTGT--------------------------AATTGAGCTC----------------------------------------------------------------------------TTGTGCCCAATCCTCCATGGGTGAGTTCTTCTAC-TTTCCAATTTGCTTGCCATTAGTATTTTATTAATAGCATCAATTGCAAGAGGG---------CTGCTCCCAGAA----Gactgtattctgagcactaagttctgccttctaccagcattgtttcagggaaccagcagaacaaga---accattgttaatcatatgtggt-aacaaggaaactgaaataaagaaatattaagaggcaggccaaggacagtgtcttag
s HiC_scaffold_1 110413954 3107 - 233722169 GACCCTAGGCAGGCTGCTTCTGCT----------GAGTTTTGAGAGTTCCCTCTTTACAGCAAGG---GTTTACCCCTCTGTCCCATGTCCCTTCTGACATAGAGTCTGTAAATCTAGGTGTAGGGGTTAGCCTTCATGGTCCCTGAAATGATGCTTGATTTTGCTTCTAGTTTGACAGGCT-------ACAGGAAGAACCCATCCTGCTGCCAGTGATccaatataaaatacatttttatttgttttgtactgAGCAAATTCCCCGGGGTAGCCAGCCAAGTGGAATGGGGTTGGTGGTAATGGAGAAAGCCTGAAATGACGACATAGTTTCCAGACCCAAGAACATTAGCTGAGTTTTCCTGATGCCAGGACAGTGAGAGGAAGAATGGACAGCTCCATCAGTCACCGACTTGTTCAGTTACAAAGCGTCAAGCAGCAGCCCGATCGTGTCTTACCAGTATACTGACAGAGTTCTCGCTTGTCTGACGTCCTGTGAAGAAAGCACAGATCTGGGG---AGGCAGGAAACCGTGAGCCCATGCTGCCCACCATGGCCTTGCCCTGCAGTCCACATTCACATCCAGGGGAGCAA---------GGTGGCT------GGCACATGGCAATATCAGCCAGACTGTGTGG------TCACGAAAGCAGCCTGTTCCTTCTAGTCTGCCTCAGTGA-----TCTCCTGTCACATTGATGTGAGGAAAAGCTTTGAGATTAGGGATTGTATGGTCTTTGAGCAAGTCCATTACTGAGCGGAGTCTATTAGTTTACCTCATCTTCGTGTTCATCTTTATGCCTGTTTATTCCTGGTTAAATCTGGTC-CAAAAGTGTAGCAGTTGAATAAATGAGGGAGGCTGCCTAGAAATGCGACAATATTCAT-TTAGTTGCTAGCAATTATTAAGTGCTTACTGTGTCCTGAGAGTCATACCAATGGCTATTTCCTGGAGGTA--------GGTTTCATAgggaaaactgaggaaaaaaagattaaatgaccAATCAAAGCCACAGGACTAGTGAGCCAGAGAATCAAGATTCAAATCCAGGACATCCAGCTCCAGACCTGGCCTCTAGGGAGGAGCATTACCTTGACA-GAGAAGACATTCCTCCAGACAGTCACTGAACAGTTGGAGAGGATCCCTTTTCAGCTGTCCTTGAAGACTAATGCCAAGGTCTCGAGGGAAGGAAAGATCTCCTTTAAGAGTTTTCCACTGTTTACAC-ATATAACATGCTCTGTTCCTTTTAATCTTGTTGGACTTCAGTTTAACAGTCTGTGCTAGGAGCCCCAGGCAATGACCAGAGTTTTTTCCAGTTT-GTTCTAGCTCTAGAAACCTTCCTTTGGTTTAACTGTTAAAATGATCTTTTCTTTTACCCATCCCGTATCTTCTTAATCAGAATATAAAGCAGCCAGAGAGAATCTTTGAGAGTATCTGACATAGGAAATGGAGCACAAGTTTCTAGCTAGAAAGATCCAGGATTATTATGTGCTATATAGTCACCCATAACctcagttaaaagaaaaataaagtctgaTTTAATTGAACAGAGTTTACTTGAG-TAAGAAAAAGGTTCTAGAACCAGACATTAATCTATTCAGTGATGATTCACTATGTCCCACCACATGTATA-----GGTTCATTTATAGCCAGAGAAAAAGATAGGACAAACAGAAACAACCTGATTGACTTCAGCCATAATTTGCTTTCTATAGA--CATGGGATGATCAG-TGGCAGTCTGTGACTGCCTAAAGCTTGACTGCTGCAATTGGCTGAGACTCAGTAACTGAGTTACAAA--------------------------TTGTTTACATATCAAGTT-------GCTCCACTGTGTAAAGAAGAACTGTGGGGACAAATTTTATCACCCAATTGTGAAGACCAGTTTAGGCCAACTTTATTTCAGCTTAAACACCTCTGAACCTCAGCTTTCTCTGTAAGTGGAGGATCATAATAATGGCCTCATCAGTATCACAGCTTTGTGTGGAGACGAAAAGTGCTC----ACATATGTGATGGcctttttcatgaattttaatcACTAACCAACTAACAAGCATTTACTGCTTGCTTACTTTCCAACTAAAAAAATCTGacaaacattttctgtttttcaggtgAATTACAGCCCAAGAAAGTTCAAGAATGGCTCAAGATTCCA-TCAATTAGAAGCAACAGGGTCTGGCCTTGCTCGTGCCTTAGTCTGAATCAAATCTGAGCGCTGA-CATTCCAAAAGCTAGCATCATACAAGTCCAGTGTAATGATGATCTGGCACCCACGGTGAAGTGAGCTCATGTTCTAGAAATCATCATGATGC----ATGCTTAGCAGAGGTCTATGAAATGCTTCACAGATAGAAGAGCCTGAA---CAACATCTGTGATAGAAACCACCATCGGGGTCCATTCCACACAGTGTTCATCCACACACATCTCAGCCCGTAGACAGGGAGCTCTGGAAGGACGGGGTACTTCAGTCGTAACTGAAGCCACCCAAGTGGGCAGAGGCTTCTACTGCTGCTTCCTATCATGTGTCTGGTCAGAAGCATTATCAAAGAGTAAGAAGGGGTTTAATTGGATCATGGACCCAACTCCAGTGCAGTCACCTCTACCCCCACTCATTATAGCTGAGTCATGCTCAGTGCCTATAGACTTGATTACCTCAGGCTTCCCAGCTACACTAGCCTGAGAAAGAA------CAGCTGCCCCAGCCCC-CACCAAAAAGCTGAGTGACTACCCTAAGAGCCCAGCCACAGGTCACAGTATTCCCAAGACCTAGCTCATACACTTGggaattttcattatatatagaaTTTTCGTgcctagggctgggaatttagctcagtggcataagcacctgtcaggcacgtgcaaggtcatgagttcgatccccagtaccaaaaaaaaagaaaagaatttttgtgCCTAAATCACCAAATATGAATTCCTCTAAGCTTCCAATttat---acattattattttattaataatgttaatTACAAAAGAGAGTTATTACTAGTTTCCTGAAGATTGACTATGTGTTAAACATTGTATTATACCTTCTGTATGCATTACCTTAAGGAATCATCACAACAATAAAGACCATTGTCATTCCTGTATGATCAACAAGGAAACTT--GTACAGAGATGTTAAATGGTGAGTGAAGTTCAGTATGTTAG

a score=62263
s chr3           100508415 5023 + 160039680 [encoded data, 5411 characters]
s HiC_scaffold_1 110417067 4321 - 233722169 [encoded data, 5411 characters]

a score=33081
s chr3           100514501 1451 + 160039680 acatgctaaggcagatatgctcatgaatgcacacattcatatacatgtgaatatatatatatgtatgtatgtgtatatatatatatacatatatatata--catgcatgcgcacatgtgtatatacagagatgcacat------aaataaacgtatattcgaca-tatatatgtgcacacatgtatataaacataaacctgtgtatatatcacgtatccatatgcacacaagatgcttatttacatatcttttctatgcagctgttggatTAGGGCTGTGTGCTTGTAGGACGTGTAATGCTGTCCCTCCAGCTAGCTCCTCCTCTGGGAGCTTGGTGTCCTGTAAAAACAGGATCTTGTTTACT------CTCAGCTTTGGA-GCACCAGCAGAAAGAGTGACCCCCAACCCC--------ACGAGAGGAAACTGAGACCCAGGGT-CACTAACAGCTGACACAgagtgcttacaacataccaccacacacagcttctaagacctctgtatacattagcccatttaata-----aagcatccggcaaggtgcttattactatccctaagttccaaaaatgaaagcttcggctaagaggg----ctgtctggcatgtacagctcagaaggtgctagaatcaggttcaggtaaactgggttgtgatggtcttcctcattaacctgccctactTCCCTGTCCTCAAGTATATGTGTGTGACTTAG--------CAACAGGAAAAGAGAGTTCCATTCCAGATCTCTAGACTTGGT-TGTCTGC-TGGCTGAG-TGTCATGTGATCCGACCATGTGACAAGCAGGAGGAGT--CCAG--GTAGGGGACAGCTAAGA-AGTACAGAGGAAACTCCCAGTCTCTTGTGGCTCC--TGAGAGGCAGGCCTGGCATCTCAGAAGTGAGAGCAGGCCGGATGCCTGGTTCCATGAGTGGGTTTGCTCACACTCTCCTGACTGTGCTCTTTTGGACTGATTTAAGTTTAATTCCAGCCTGAATGACTGGAAATACCAAGTATTTCCCTCGGATTAGTGACTGGCCAAGAGAGCCAGCTGCCTCAACCACAAGCAGGTACCTTGGGTCTCAG---TTCCTTAATCTCAAGGATTTCCTCAATGAGTCAGGTCCGGT-GCCTCCCAGCCCCAGGAGGGAAGA--CCAACCTCCCGGCTTGCAGGTCTCTGCTCAG-TGTGGTAGGGCAGG--CAGAATGGTCTAAGCCCAGCCCAGCAGCCC-ATTGTCCTAGTTCACCCACGGCTGAGGCTCAGTTTATTCATCCATCACCGAACGGCCACAGTGCAAAGGTGCACTGCAGAAGAGAAAG-GTTCAGGAGCTGTAGACGGTATAGCCCTAGGTCAGCACCCC-AGGACAGTGGCCACGCTGTGCAATGGTTAGGGACATGGCTCCTAGTTGCTCCACACTTGACAACTCATTGGCCTTATCCACAGCCCATGACTTCCCCATAACCT-GCTTGCCATCTCTGAAATTAGGAAGAGA
s HiC_scaffold_1 110422841 1417 - 233722169 acataccAACACAGACATGACCAT--------ACATATAGATGTATGGAAACACATATA-ATGGAAATATGTATGTACCTGTGCACACATATGCTTGTGACTATGcaaacatacatatatgtacacagagacacacatgcCCACAAATGCACGCGTGTACAACAACATATACTCACATACTTGTAttta------------tgcacatat-acacatCCATGGAAACATATG-TGCTTGTGTATATCACAAATAT-CACACATGATAGGTTATAGCT-------TGTGGGACACATAATGCTCTCTGTCCAGCCAGTTCACCCCCAGGGAGC------------------AGGTTTTTGTTCTCTGAGGAGCTCTGCACTGCACGTCTTGGTAGCAAGTCCCACTCCCAGCCTCCTCTTTGcaagggaggaaactgaggaccaGAGAATGATAATAGCT-----ACATTGCTTATAATATGCTAG---GCATAAGTCTAAAATCCTCCCTA-GCATTAACTTATTTAATACTCACAGCCATCAAATAAGATGCCCAGTATTATCCTTGTGTTCCAAAA--GAACAC--------AGAGGAGTCCCTGACTGGCAGTCACA---CAGTGGCTGCTATAATCAGGTTCAGGTCACC--GACTCCAAAA----TCCATACTAAGTTATGCTGCTTCTCTTTCACCAGATACAATTGTGAGGCCTGAACTTGTCTCAGCCGCTGAGGAGA-TCTCAACCCAGACCT---GCCTCACTCTGCCTGCCTGGCTGAGATGTC-TGCTATCTGTCCA-----CAGGCTGGATGGGCAGCCAGAGGTGGGGAAGGTCTCTGAGAGTATAGGCGGGGC-CCCGTTCTGTTCTCACTCCGCCTGCCCACAGCTCCAGCATCTGAGAAGCCGCAGCAGGCAAGATGCCTGGTTTCATTGGCAAGTTTGCTCACATTCTCCTGGCTGTGCTTTTTGGACTTGATTTAAGTTTAATTCCAGCCGGAATGACTGGAAATACCAAGTATTTTGCTAGGATTAGTGAATGGCTTGAAAAACCAGCTGTCTCAACCACGACCAGGTACC-TGGACCTCAGAAAATCGTTAATCTCAAGGAAATCCTCTGTGACTCAGCTCCGGTAGTTGCTCAGCCCCAGGAGGGTACAACCCAACTCAGATGCT--CAGGTGACTGCTCAGTTGGGGTAGGGAGAGGCCAGGTCAGTCCCAGCTCAG---AGAAGCCCTGTTGTCTCTACTCA-CCATGACAGTGACCAAGTCCACCCACCC-CCATCACAATGGCACAGTAAAATGAGAAACAGCAGGAGGAAAAGAGGACAGGACCAGTAGACAGTGTAGGCCCTGCTGAGTGCCCTGGGGACAGCGGAAGTGCTGTACAGTGGTC-GGGGCACACCTTGCAGTTGCTCCTAGTT--ATGGCTCATTGGCCTTGGCCACGTTGCACAGCCTCCATATGACTTGGTTTTCTGTCTCTGAAATAAGGACGAAA

a score=28885
s chr3           100519082 1873 + 160039680 GTGGTCCACTCAGGAA-GCAGATGTAAACTGGGGAGCCCCAAACAAACAAACTAACACTGTAAGAAATACTTCCAAGAATGAGACCATGATGCTGCTGAGAGGAGGGCTTAACTTAG----GGAGAGCCCAGGGAAGCA--GCCAGTAACAAACCAAAAGGAACTGGGAGATTATTCTAGAGGGTGAGAGTAGCAGCTGCCAAGGTTCCTGTGGGACAC-GGCAGGATTCGTGGTTTGCTTGGACCTTCCCAG-AAGAGGTGTATATTGTGTGGCTGGGTAGAGATGGGACCAGGAGAGGCT---------AGACCAGTCCCCACCTTGGTCTCAT-----------CATGAGGAAGAGAGTTG---GGGCCCACT---------AAACAGAGGGTTGGGTTTCCAAGAGGTTCTGCCTCTGGGTTACTTGGTGCTTGGGGCCAGATGGCTCTGGGCTCTCCTAGC----CTCTGTTTAGGTGCTGAGCAGTCGGCATTACCCA----------CAACCCGCAC-CCACTCAG----------------------------------------------GTACACACACACTCCCTCCTCTGTGTATCATGTAAATGAATGGAACTTGCCCTGCTCAGAGACTTTTCCTGCAAATTCCACTCACCCAGAAAATTCTAGTTACTAGAAACAGGGTATAATCCCACATAAGAAGTTTTG------------TCTATCTCTCTTGCTGCTGCCACTCCCCCAGATCCTGCCAAGCCTGGCCTGCTCCACTTCGGCTGAGCTAAGAATCTGCTGATCCATTAAAGGGCTAGTACTCACGAAATTACAATCTGACACCTTCCCATCGCATTCTGTGACACTGGAGTACCATGGACCCCTGTGACTACAGTAAAGATCAG-GCACCTAC--TGGATTCCCAGCAACT-GGACAGTAGGTAG-------------------------CTAAAGGGAAG---TGAGTGGGCTCCACTCA------TGTCCTCAG-----------ACTCATCCCAGAATTCCAGATTCCACAGACTATGGAGAAGGCATTCGGAGGCCTTTCCTTGCCTTATCTGTCACCCCT-TAGGATGCCCTCTT-----AGGAAGAGGATGCAGGCTAAGCATAGCCTC-ATTTTCTAGCATAATAAA-----------------------------TAATCTGCTAGAACTGCTTTATAAAAACGAAGACACCAGGACCTGCATCAATCTGTCCTGGGGAGCTGG--ATCACCCCAGAAGCCCTGCCTGGGCTGAG---GTACCTGTATTT--------------------------------------TGGTCACCTGTGGACTCT-GGGACAGCT-----TCTTTCTGTAGCAGTCCATCCTATG----TGTTGG--TGTCACCACCACCTTCTAGTGG---TGAGGCTTAG-GAAGCCATA------------GAAGGTGACAAG------------------AGATGGTGATACATCAGGCTTCCGGAGTCAGCAAGCCAGAGAAACAGGAAACATGGCTATTACTAGACAAATGTCATTCTCTATGGGCAGCATTGCCAGGGGTGAGAGCTA--AAGCAT----CAATTGGTCCTATCCATTCTTGAGGAAGCATCT---TGTCCTTCTTCAGCAAGACCTTA-----TCCTTCCTAGCGGGGGC-------TCTCGGACAGCTCCCTACCTTCCCTAACCTTCCTTCATTGTATGTCCACTTTGGAGAGCTTGGGGGCAGTCTACCAGGG---------------TGGGATTAGAAATGCATAGGA-----------------TGCTGGTATTGCCAAGAA---GGGGGTTGGATATGAGGACATGCCAGGGTAGGGTCTGGCTCAGGAGGTG-GCTCAGACAAAGGGGCAAAGAGGAACACAGTTCCCAGGTGACTGAAGGGGTGAGGGCTGCTCAGACTGACAGGCCTAGCCTGCAGTGGCACTGTGCTCACAGAGGGTCGTCT-GGGGGAGGTAAGGAGTGGTCCCTAGCCACAAGTTCACTGACCACTTGGAAGCCAGAAGGGGCCCCATGCTAGCTGATTATTAACTGA----CCAGGGCAGCCATCATCAGGAAGTTCTAGAGACTGCCATGTGGACTTACCGTTTGTATTGTTGCCTCTTATTCCTTCCTTGT
s HiC_scaffold_1 110427109 2143 - 233722169 GTGGCCCAGTCAAGAAAGCAGACATGAAATAGATAACACAAAACAG------TAGC--TataagaaatacttcaaagaacaaGAACATGGTACTtaggaaagaaatatttcacCTAGACAGGGAGATCTGATGAAAACATAGGAGGTAATGAGCAAAATGGAGTGTAGAGATCACT-TAGAATGTGGAATCAACAACTGCAGAAAGTCCAGGGTGACATTGGCAAAGTTTGAGG-------GGAGAAACCAAGGAACATGAGTATGTC-TAGGGCTGAGGCAAGGAGTAACAATCAGATCCTGAAACAATAAGATCAGgtgaaactttggccttatttcTCTGAGAACAATGGGAAGAGAGTTGTGAGGGCTTTCCGCAGGTTAGAAACTCAGGCCTACATTTCTAAGAGGTTCAGCCTTTGGACAGCTTGGTGCTGAGAGCCAGCTGTCTCCAAGCTCTACTAGCATTTCCCTGTTCAGCTGCAGAAATGCTGGCACCATCCATTGGAGGCCCCAACTCACAAACTGCTCAGTGTCCTTCAGTTCTTCTGTCCAAACTTTGAGCCTAGAGGCCTTGTTGCATGCGCACAACCCATGGGCAGTCACTCA---GAGTGAATGGAATTTGCAGGGCTTGAAGTCTTTTCCAGTAAATTCCATTCACCCAGAAGATTTCAGTAACCGGAAACAGGGTTTAATCCCTGGCCAGAAAATTTACCAAGGTGGGTTCCTGTCTCTCTGGCTGCAGC-------------CCTCCCAGTCCTGGCTAACTT--CTTGGGCTGAGTTAGgaatttattgatttcttaaaGGACTAGTTCTCAGATTTTTACAATCTGACATCTTCCCACAG----------CACAAGAATGTC-CAGATCCTAGAGACCCTAGGAAACTTAGGTGGGCCTACAGTGGCCTCCTAGCTGCTCTGAAAACAGGTAGGCAGGTCCTCCCCTTGCCCCATGATTCAGAAGGAAGAATTGAAAGAGCAcagctcaggatcttgtgctcAGCAGATCACAGAGTTGATCCCAGAATCCCAGACTCAACTAGCCACAAGGATGGTGTTTGGATG----GCAGAGACTTTCCTATTACCACTGTAGGACACAGCCTTTCatcagaaaggagggagagactAAATGTAGCCCCAATTTCCCAGCAGAAAAAAGTAACACTCTCTCTGCTGTTCTGCATTAGCAATTTGACTGGATAGCTTTATAGGAACCTGGAAACCAGGACCAGCATCA----GAGATGGGGGTATGGGAGCTACCTCTGCAGCCCTGTGTGCATCAGAACTGTGCCTATACCTCATTGCTTTGAAGATGGGCCCTGAGTGCATGGATTGTATGATTGTATAAGAACTCCAGGGACagttttttattttcccatagTAATCCTTCTTCTGCCCTTATAGGCATGTCACCATTGCCTGCCAGGGAAGCTGTGACTTGGAGAAGCCATAAGCTGAAGCACTGAGGGCCACTGGGAACTGAAAAATGGGCTAAAATGGTGATATTTGGGACTTCCCAAGGTGTTAGGCCAGGGCAACAGGAAGCATGG-TGTTATCAGACAAATGTAGTTGTCTGCCACCAGAATTGCTATGGAAGAATGCAAGGGGGCATGTGGTAATCGGTCCAATCCACTCATGTTGGACTAGGTGTCTGCATTGCTTCATCAAGGGCCTGGAGATGCCCACCAAATCAAAGCCAAATCATTTTATCCATTTCACTGGCTCCAC---CCTCCTCTCGATGTCCATTTACCTTTGAAAG-TTGAAGGCTGACTGCCAAGATGTCTGCTAGGGCATTGGGATTGGAAATTCACTGgaaataataggagaaaattCACTGGAAATATCAGGAGAACAGGAGGTAGGTATGAGAAGACACTAATATAGGGCCTGACCCAGATAGTGTGCTAACAAATGGGGGCACAAAGGGCCAGATCTCCCACACAGCCTCAAG-----GGAATACTTTGATGGGCAGGTCTAACCTGAAGGCACACTGTGCCCATGGAGGGTGACCTAGGAGGACATAAGGCAGAGCTCCAGTCAGCA--TTCTCTGACCATTTGGGGATAAGGAG------------AGCTCTCTACTGAGTGAGGCTCTAGGGTTTC--TGGGCCGGTATATCTGCAAACTCCAGTCTAACCTTTGTCTCCACATTGCTCCCTCCTTTTTCATCCCTGT

a score=15623
s chr3           100521072 2412 + 160039680 TCCCCAGGGCCCTTGTTGGGTGTGTAGTACCCGTGAGCTGGGTCAGTAGCTGCCACAGAGTACACTGGAAGT-----------------------CTCCT-----TCTTT-----GGGGTTCCAGTGGCCCCACTTTGGGTCAAAGGATCAAGAGCTTTCCACGCATACCTGCATGGCTCTCAT---------GGGGCTTTTTCTTGAGAAGGGTTGTTGAGTCTACATCATGGCGAGTAACCTTTGTGTTCCTTTATTCAACAAATATTGATTGAACTCCTTTGCTGCCTTTCCTTTTGTGAGAGAATGGCTTCCTATGTACTTTCCAG------TCAGAAAA--CAAACCTTTCCCACAGTCATTGTCATCCTGGTCCCTGAGAC----------------------CTTCCTTGTTCATAGGTAT-GAGGAACGATGCAGATAAGGTGTCATGGCCACACACAGAGACACACACAAGGTAAAGTACAGGGTAGTGGAGAGTGGATGTGGAAGCTGGGGCTTCAGGGACACAAAAGCGAAAGACCTGTGTGGGAGGAAATAGACCTGCCCAAGGAAGGCCTCCACAGAGCTCCAGGGGCTGAGGGAGCTGAATGCCAAGGGAAGGGTTGGGGAGAGAGAGCAGAGTGGGGGACTCCCTCTGCTAGGCAGGCAGCTCCAGGGTATTTAGGTTCACCCCAAGAAGAAACTTAAAGAAGCAGAGGGGGTTAGGGAGGGACAGTGGAAGAAGCTGAGTCCCCTATGACAGAAGCCTCTGATACAGCAGAGGCAGATGGAAGGGCTGAGGGAACGgtatgcatatgaatgaaaagttccctctgaagccagaaggaggagtcaacctcctggagctggagctacagttgagtgtgaaccacaccttgtggatgctgggaacataaaccaaatcctccacaaaagcactattcactcttaactgttgagccctctctccagtcccCAGGCCTTGGCACTCT----GTTGTATGGAATTGGTCAAATGGCCAAG--ACCTGCATCTCTCACACAGGTGCTCTCAAAACACAGACTGTATAGAGCCAGTAAGAAATACAGGCTCCGGGGCCTCACCTCTGTATACACACAAGCTTGAGAACCAAAGATTCTAATGAGATCCCCAGCCCTCAGCATCCAAAGGGAAGGCCAGAATTAGGACCAACCGGGGAAAGGGGATGCAGAGAGAAACAGAGAGTCCTGGGCC-AGGGCACACAAGACACAAACAAGCAGGGCCCAACTGGGTATAATCGATTAATCACACCCTCTGCTTCAGGGGACCCCATCAATCCTATAACAGTCCAGCCAGCAGGATCATCACCTTCCTG--TCCTGATAGGTTTCACAGCCTTGTTTTCTAGGCTGGTTCTCAAGAGCAAGTGACATCAACTCAGAGCTGGCCTTGGTCAGGCACAGCTGCTGTGCAGGGAGTTTCCTGACCCTAAATTGTAGCATTAGCGTACTTAATCCTTCCCCCTGTGTTTTGTCCCTGCACACCCACATATCAAC--CCTGTAGCATCAGGTATTTTAGTGTTTGGACTTTACACATGCAGTTTTATAATTTCAGAGAGTTGGTGATTCGTCTGAGGTTCCTTGACATTGAATC------------TAGCATTGGATG-------TCATGT-------------ATATTTTGGGGGTCGTTGCCAGGTTCCCT-GTCACCCGTGTAAGGATGCTAGCCCCA-CTCTATAGCTGG---------TTCAGGCCTCCTAGAGGATTAGGAGCCGGGGCGGGCAT--GGTCAGATGTCTTGTGAGCCTGGCCTTTCTGG-----GCACTTGGCTTTGTTCTCTCATTCCAAACATGTGACTGTCGCCCTTCATTCCAGCGTTTCTCGGGAATTTGCTGATGCAGGAATCTTCATTTCTGAAACCTGCTTCCT-GCTTTCCCCAAGCCT-GACCCACAACTTGTATGGACAAAGGGACATACCCAGGCTGCCTGAGA------------------TGGCTTCA---------------------------------------------CCTACTTCAGGCTAGGCTTGGCATCTCATATCCCCAGTGTCCCTTCACACACGCCCCCATCTCTCCCATGAAAACAGACTGGATCAGCTGGCATGCAACACAAAATCC--------ACAACTGTCTCCTGTGCCTTCATCTTCTCCCCAGAAAGCAGCT---GGTGCTAACA-CGGGAACGTGAGTGCTAACATGCTCTGGAGCCT--TCCAACATCTGGGATGGAGAGTCAGGG----CCAGGACCATGCAGGGTGGTGAACTTGAAGCTGTCCTGCTAGCTCAAAGACT-GTTGGGACCACAGATTCAACT--ACCAGAAACTCTGAGAGAGAAGCCCAGAGGGCTATCCTAAAAGGG----AGATGACTATGATGACGTAGCCCACCATAAGAGCCTCTGGACAGGTCTCCGTCTCGT-------------------CAGGAGCTC---ACCCACTGT------TGCCCATTTTTACTACTAAG--CCGGAGCTTCCTCTAGCCCACGCTACCTCCTC-CTGTCTCTGCAGCAGGCAAACCCTGTCATCTCCAGGTTTCTCTTCATCACTCCCA
s HiC_scaffold_1 110430446 2157 - 233722169 tccCCAGAGCACTTTTGGCGTGTGTAGCCCATCTGAACTC------TAGCTGCCATGGAATTCACTGGAAATAACGGGTCAAAAAAAATTTCCTACCcctgaatatttttcttaaaaaattccaATTTCTCCACTTTGCATCAAAGGATCAAGAGCTTTCTATGAATACTTGCAGGGTTTTCACATAACCAGAGTGCCTTTTTTTCTAACAG------------TGCATCTTGGAAAGTAGATTTTGTGTTCCCTaatacaacaaatatttatagaattcCCTTGTTGCCTTTCCCTTTCTTAAATAGTTGCTTCAT---TACTTTTCAGCTGGATTCATAAAAGGTAAGACTTTCCCACTAGGACCAACAC----ATTCCTGAGGCGGTGAACCTGTCCCTTTACTTACTATCCTATTCGTGGGGCTGGAACAAAGTTCCAGAGAAGATGCCCTGGCCACACACAAAG-------CCAAGCAAGGTAAGGGACAGCGGAAGGCAA-----------GGGGCTTCAGG-----------ACAGGACCACAGTAAAAGCAAGT---------------------------TGCTGCAGAAGGGGTAGATGTTGAGTCCCA-------------------------------------------------------------------TTACATTCCCC---------------AGCCAGCAGAGGCCCCTCGGTGGTGGTATCAGA---------------TATGAT-GATGCC-ATGCCACAGCACTTTCAGAT---AGGGTTG----------------------GGAAAGTGCCT------GGCAGA--GATGAGCCTA------------------ACAGTGGCTTTCAAA-------TTGTTAATG-----------ACCCAA---------------------------CAACTAATGAG---------CAATGTAGATTCCTTGGCTCCATCTGAGACCTATTGAATCAG------GGCccagaaatctgcatttt------------------aaca-agaccACCTGGTG----------ATTCTGGTACCG-----------------------AAGTTTGGAGGCC-------CTAATATGCCCTTGTGTCC-CAGTATCCTAAGAAAAGGCTGTTATCAGGTC----------AAGGTGGAACAGAGAGGAACAGAGAGCTCCAGGCCTTTAACATACATGGCACAA------GAGGTCTGAGTGATTAGAATC--TGACTCATGCCCTCTGCTGAATGGAAACCTGTAGATCAAAAGGTGGTCCCGCCAG---------TGCTGCCCTGAATCCTGTTGGGTTTTACAACCTGGCTTCCTAAGTTGGCTGGCAGGAGCAA------------------TGGCTCAGCCCAGG--------------------------------AAATAGCACCCCTGGGACACCCAGGCC--CTCCTTATACATCATCCTTGAATATCCACATATCCACGGCCTGCAGGAGTGAAAATGTT-----------------CGTGCAGTTTCATAGCCTCTGAGACTTAGTGACTGGCCTGAGGTCACTTGGTTCCTAAGCTGTAGAGGGAGATGGGATTGAAGACACCCACTCTTGTTCTCGGCTTTCCCTCATTCTTGGTGTCAAT--CAGGTTTGCTCATCTTCCATGTGAGGGCACCTCCCCCAGCTCTACAACTGGAGAGGGTGCTTCAATATTCACAGAAGATAAGAGTTAAGGACAGACTCTGAGTGAGGTGTCTCAGGGGCCTGGACTTTCAGGGACAAGTAGTTGGCCTCATATTTTCATCCTGGGCATGAAAATGCC------------------TCTCAGGAATTTGCTGACAAAGGGAGTCTC-TTTCTAAAGCCTGTATCCTGGCTCTCCCTCAGCCCAGAGCCATTGCT-------GAAGAGGGCTGTA-CTGGGCACCCTGAGCTGCTGACAAAAGCCACCTTGGTTTCAATGACTCAGCTTCTTGGGCAGCACTTTCCTGGGCCTTTCTAGGGTCCTGCCTTGGGGTGCACTTGACAGTTGGTTTCTCCTGTGTGATCCCATAAGGATCTGCCACTTGTACAGGAAAACAGACTG----AACTGGTGTGTGGCATGAAATCCCAGAAGAGCCaactgcttcctg-gtcaccat----------gaaaGCAGCCTTGGGTGATGAGAGAGGAAACTCCTCTGCTTTGATATTGTGGAACTTGGTGCACAGCCTGAGCTAGTGGATGAAAGTATCCTAGGGCAGGGAGAAAGGCTGAACTCA----TGTTGTGTCTGTCATGGGACtggttaaaaatgcaaattctatTGAAGCAAATGCTCTGTGGCTAGAGCCCAGTGGTCTTTCTCAGTAAGACCACAGATGATTCTGATGTT----TCCATCATAGA----TCACAACAAGTCTCCCTcccatttccttcctcttctgtcAGCAGGAGTCTACAACCCACCCTGAAGAGCTCACATTTTCCCTCATATGTCCCTGCTCTCCCACCAGCATAAGGGGTCATCTCACCACCTCTGCAG-------ACTCTGAGCCCTCCAGGATTCTCTTTGTCATGCCTA

a score=27833
s chr3           100525952 2197 + 160039680 ACCAACCCTCCTCCACGGGCATCTCCGGTTTGGCCCACTGGGCATCACAGTCCCTcttttctgaaaagccacttggcaactcgtgtgtagaacagtacacaagttcttaccctttgacctagtaattctatttccaggaatctgccctcaaggaactgagcggagaggtgtgcagaattttacgAATCATTTCGACCATTGTAGCACTGTTGCTATTTTATAACAAAGTAAGAAGAAAATGAGAGGTGTTAACTTCTAGGGACACAGGGAGCCACACTTCCATGGTGA------TGTATGG-CTTCAATAATCTC---AAAGACTCCCAGGGAACGTAGTAACAAACAGAGAAGCAGCAGGCACCAAATCACTCAGCCCTGGAGCTCAGCTTCTTCCTCTGGGAGAGGGCATGGCCACCTTACTCTTAGGAAAGCTGTGGGCGTAAGGTGAGGAATGGTGGGGCCCAAGGCTGGC----AGAATCCAGGCCACCCACTCAGCACTGAGCAATGAGGCTGCTCTCTTTCTATTAGCTCCTAGGGGCTCCTCTGAAATA---AGGGTCAACCT-TACCATTGTAATGAGCAGGAATAGAAAGCTTA---AACGGGTTAAAGAGCTTCCCAGGGGCCTCACAAGGACTATGGGCAGGGGATTGATCATTTTGAATCACTCCTCCCCCTGCCTCTCCTGCCATGGCCCTTAGCTATGTGGTGTCTCATGCTGTGTTCCTTTGG---CTCCAAGCAGGCTCTCAGACAACACTGCT------------------------CATGTGTAAAACAGTA------CCAAGATC---------CAGAAACAAGTTCAAATCCACGTGGCGCCTCTC-----TCTCTGGCTCC--GCAAGTCACTTCGCTAGCACTTCAGGTGTCAGCTGTCACTTTAACATCTTCCAAGGA-ACAGACCACAACTGTCTTGGAGCTACAGACCCAGACTGCCCCATGTACAGTGTGCAGAGGCTTGGCAGGCAGTGtttttcagacgaggaaaccaaggctttgaagacagtatgagaaatgccttgttcaaggccctggggttaagcagaggtaaggttgggGAATATCTTCTCGTTTCAAAACAGCATTGTGCAAGCTAACCCACTGCCATGAAAATGTCCCCCCTGCACCTGTCCTCTCCTCCCAACCTTCttttctgaaataggatcagacctcagctggctgagaacttgtcatcctcctgcctcagactcctgcatactgagatcaaaggtgtgtaccactaggcccATCaaaggtcaaccttttctaag-gcaaggttcagtgaacttgg-tgtgtctgcaggattctacagtcctctccacagtctcattcgaaaacacctcatcactgcaccaagaaactctgcacccatcag---ttatgtctgcccctccccaactcc--ttctgccactagaaataattaatctttctctctatagctttgcttaatttggacaatagtcctacaagtagatctattattgtatgtgctcttttgagaccggattctttcacttag-acagttcttaaggtttgtttgtggttagcaggaatgaacacttcagtcctattacagctgagtaagaccc-caaa---------cgtggagttgtttctc--ctgttcatcactgtcattgatggacatgcgggctgtgtccacctcttgagcattatgaacagggtgcctctgaacagtcacatacaattctgtgtgtgtgcaggtgttCAGTTT----GAGGAGTGGCTTATACAGGATCGG--TTAAAGAGTAGCCTCCCTTTGCTATGCCATTTCTCAGAACCTTGGCACGCCAACATGCA-TCTTCCAAATGTATTTGGCCAGGAAACTATTTTCCCCATAAAGTATCCAGGAAGACATT-GGAAAGTCTGATTTAATGCACCCATTTTGC------------------------ACCCAGAG--GTTCAGCAACCC----ACATCATAGACGAGC--GTAAGGGGTGACCTATTGCAGTAGACCAAA---GCAACATGCGGCTGTCTGAATGGGAAGAAGCTTCGTAAACAAGGGATATTC---AAGAGTCACAAAG-------------GCATTGGA---AAAATGAATGT---GGCTCCATACATAAACAATGAAACGTCTGAACCTCAAGCTACAGATGAACGCAATTAGCGAGCAAATGGCCATGCTAAGATAGCCCACTGTATTTTACTCCTGGCACTAAGGGAGAAATCCCAAACAATACCAACAACTGTGACTCTCAGGCCCTA-CCATGGAGGTAGATTTCAGTTAAAAC
s HiC_scaffold_1 110433654 2106 - 233722169 ACTTATTCTCTTGCACTGGCATCTCCAAAGTTGCTCCTTGGATGTTGCAATCTTCCTTTTCTAGACAACTGCTTAGTAACAAATTCATAGAGCAGTG----AGTTCATACCCTTTCACCCAGTAATACCACTTCCAGAAATCTGTc-tcaaggaaacaagcagaaagGTACACATAATTTTATGAGTAAATTTGTTCACTGAAgtattgtttgtattttaaaacaaaatagtaacaa--------GTACCAGATAGTAGGGAAATAG-----CGTATTTGC-TGATGACCATACTATATGGACCTTAATAATGTCTTTAAAGGCTAGCAAAGGGTATAA-AATTGAAGCAAAAAAATCAGGCCCGAAGCCTGCCTGCTCCTGTGCGTCATTTGTTCTTGTGAGAGA---------------------AGGATCACAGAGAGCCTTCAGCAAGGCACTGTAGGACCTGAGCCTGGCTGCTGGCGTGCTGGTCACCTCAGGAGTACTCAGCAAAGGGGCTGTTGTC-----ATGAGCTTCCAGGGACTTCCTGGAAAGACAAACAGTCATCTTGTGCC-----------------CAGAGAGGTTAGGCAATGGGTTGAAA----------TGAAATTGCAGAGGATACATGTATG----TGACTCTCCCGGGCCACTCCTCTCTGATCATC-ACTGCTAGGGCCAC-AGCT-CGCAGTGGCACA------GCTCCTTACAGTTCTCCCAGCAGGTCCTTGGGCAGTATTGCTGCCCCTCTCTCCACTACCCAATGACCCTAGCAGGGCAGTCATCATTCAAAGAGTTGAGCCTGACAGAAATAGGTTCAAATCCACACATCATACTTCAGAGCTGTACGGATGAAGGCAAGCCACCCGCACAGGGCCTCAGATTTCATTCATGCTTTCAGCTCTTCCCAGGGGTGCAGCCTGGAGCAGATATGGAAATACC--------CTTTCGTCTGCACTGTGTAGTGGGGCGCTGTGGACCATGTTGTTTAGAGGAGGAGGTCAAGGTTGT-AAGATGTTA-AAGGTAGATCTTGCTCA-GGTGCTGGTGTCAGCCAGAGAGAAAGTTGGGAGGCACCCAACTCTTCCAAa------------------------------------gtctttgctttgctttgcttt--------gctttgctttctgagCTAG----------------------------------------------CTTTAGGATATTTAACTCA--------------CATGCCCTACAA---TTTACCCTTTTTAAGTGCCCACTTCAGTGGTTTCAGATATATCTGCAGAGCTGTGCAATTATCAATACAATCTAGTTTGAGACCACTTTATCCC--CACCAAGAGACCCTGTGCCCATCAGCAATCATCCTTGTTCCCCCACCACCACGTTTTCTCTACACCAGGCAGCCACCATTTC-----ATAGATTTGCTTAATCTGCACATT--TCACATAAATACAGTTTATAGTTTGTTTGATGTTTT-ATAGCAGCATCTTTTATTTAGCATTGTTTTTAAGGTGTGTGCATGTTTAGTATAAATCAATACTTC----TTTTTGTGGGTAAATACTatccacaaaaaataattttgtggatATTTTGctcatccattcatca-----gttgatgggcatttggg-tgtgTCTACCTGTAGACCATTATGAGCAATGCTGCTTTAAACATACATATAAAGTTCTGTATTTTCATAGGTTTTCAATTTTCTTGAGCA----CATACCCAGAATTGGAACTTCTGGGTAATCT-----TTCTATGCTATTTCTCAGAATTTTGACATGTTAATGTGCATTTTTTCCAGCTTATTTAGCCAAGAAA-TCTTTTTCCCAAAAAGCATCTTGGAAGACTTCAAGAAAGTCTGGTTTAGCCCTCTCATTCCTCCcacttttctggaaaaaaatggaagccCAGAAATGCTCAACTACCTGCCAACATCATAACTGAGCAAATCAGAGGAGACC-ATCAGAGGATGCCAGATGGACAACATGTGACTATTTGAAT----------CTCCTCAACATGAGGAATTCTGAAGAAATCATAAAGCAAAAGGGAGATAATactgaaaataagataaatattgaAGATAAATACAGACACATTTAAACTTCCGAAGCACAAGCTACATACAAGcaaaattaacaaggaaataaAGGCATCAACTTAGACCACAGCATCTCA---GTGTGGCTAGAAAAAGGGCCCCAAGAAGCATGAAAAATGTTGATGCTCAGACCGCATTCATCAagatggattttgtttttaac

a score=37974
s chr3           100529478 2554 + 160039680 GGTGAATGATTTTCTAGTGTGCCAAGTTGGCTACAGAAAGCTTAACAACTATTCTCTGAaaagtg------------------ttttctgtagctaatttgggcctaatcctttcaaaggtca-----acaggtatctcagcccaagttcacaagataagaaaaacagggaagtcaacagcttgtccaaggtcacatccaaggtgcacaaggttaaagg-tgaggaggc-caggcctgcc-----tcaagttctgtctgcactttatttcactgAATAGATTCTAATATCTCAACC------------------AAGGATAGTCAGCAaacatgacttctccttgctctg--ctagacttctgtatgaccaaagatcagccaccattatggaaccatgtcctaccaggtccttacatcatgctctgatggtcaagtataagactccagcatgctgagtatgtacag--gttca----aagccctgtctctg--------ctgttgtcct------------ataggtaggactggatttgtactcttacactttccctaattaaacatcatcttgataaaatcactt-----tctggccaggcaagagtttggggtcctggttCCATCATTAGCAGCTCTC----TTTTACATT-TGCTGTGACGGCACACTGAGGAAGGACTTTCAGAAAGGCGAAACACATGG---TATCAGGGCTTTGGAgggctagagtcagtgagctctggagctgaatcctagtttcgacagttaggacctcatgaccttgagtaatacagccaatctctcaaagtttctgtttcctgtctgtaaaagggatgaggaaaacactggctcacaaagCAGGCACCATCACGAGCCTGTGATGCTGTCCCTGGCATGAGAAGAGCAGGCAGTAGGTGGAGGCTGGGCAGCCCCTGTTTGGCCATGTGCTCTGCACTGTGCTGGGACAGAGGGACATTCTGGAATGCTTCTCTTCAA--TCCATCCAAGGATGGTCCCTC-GTAGTCATGGGTGCCATCCCCTGGGG-AGACGTGGCTTGTGACTGTCATGAGTAATGGGACAGGAAGCAT-----TGTCCTGCAGGGTCCGAAGGCATGAGCCAATTCTGGGACC------------------------------------------CACCCAAGAACAATGGCAGTTCT--------------------------CCATGGGTCATGTTCACT-GGAAGCTTG------------CTATGGACAGCATCTCTCATGCCGACTTCCTCTTTTTTATGCAGAC--CCGTGACCCCAGAGACCTCACTGAATTCCACCTTTTCCTTCCTCTCAGGCAAACTCAAC----CATCTACTCTCAGATCTAGTCAAGGAAAATGGC---AACCTTTACCGTAGACTAATTCCTAGGCAGCTTACATTTGCATATATGCTAAACAATCATGACAGTGTCCAGAGAAGTGTGTGTGTGACAC-AGGTAAGATCTCAATCTACATCATTTACATGGG----TGTGATGGAACTGGGTTGCCTAAAAC---TCTCTTCCTCTGATTCTagatgcccctcaacttgcaacgtagtgatgtccagatgaactcaccatgaaccgaagatgggaattaaaatgcatgaaatatttttaatccacttaatctaccTTCAGAAAGAAGAC--TGAGAGACAACTACTTCCTCAGGCCTCAGCAGCCTTATCTCGGAattctagaatcaggcagcagtctagacccaaaatggttcagaatgttcc---------atgtcaggcg----------caagaagcaagtcagaaagga--------ggaagtgagacacagaaacagcctgattggctccagctcacatctgcttgtttagTTTTTGTTTTTTTAAATAAAGGTTTTAGTTAGCCCCTTGGCGGAGACTCGGAAGATTGCTACAAAA--AGTATATAGCCTATTCATAAACAGAAGTTAGTTTACAGCTTACCATGCACAGAGAAACAAACCTTCAGGCAAAATTTAAAATACGTGTAGAGGCAGCTTTATTCCAAACCATTCAATTTAACACCAGCCAATACCACAGCTTCGCACTGCCTGAGGTTG----GACCCtttaccctggtgttgtggctcacttggtgctatggatggatgctgttgcccggggtcttgagaaactatctgattgcaagtca-attagtccaagtaaagatcaaaactc---actcaaaaaaaggtctcttccaaaagcatctaggctctaggctttcctacagtaacaaatttggcaaatctggc---gttaagtctcctaagccaagggcatc----tgCTCTCC-------------TTACAGctgttgtctctgaaaggggctctaagaaccatttc----agtaaaaagcctgaggaacaatgccctttgctttgtgctcctgataggcaatcctggtcctctggagagcaatggatggcccagactgaatccaga--------------gacatgcaagaaataaagcggacaggaaagcccacaaccacattcctaataca---cttccctacaCAGTAAGTGCCTGCTGT-------TTCTTATTGCTTACCCAAGCGTA-AAGTATTGTT--TACCCAAGAACCCATGGGAGATATCA-----------CCACCAGTTAAAAGGTCATCTCCAGACCCAGCATCCTGGAAGGCAGGGTGTCCAAAAGGCGAGCTTACAATACATGTAA-------ACCTTAACTAGTTTATATCAGTGGTTCCAGATTCAAGCAA----CACGTTtgtcttagttctggt
s HiC_scaffold_1 110437667 2742 - 233722169 GGTGAGTgatttccaaatatttcaaaTCAGCTATGAATATCTTGatcatctttctttaaataataccaTTTACAAGgaccatttcttctatgtttactTTAGCCCTAATCCTTACAACAGCCAGACAAACTGGAATCTTAACCC-----CATGAGA-ACCGGACTCAGGGAGATCAGTAATTTGCCAAAGGCCACACACAGG---TATGTGGCTGAGGGATGTGGGAACACAAACCTGCCCGGGGTCACCTTGTTCCTATGCTCTGATTTTCAGAATAAGCTcctgtttttctcccttctccaggTGGACCATTAAGGGCAG--AGCAAAAGTGACTTCTCTGCCCCTTGGTCTCAGCTTCAGTACAGCCAAGGATCA--CACC--TGTTGGTTCTTTGTGTCCCTGGAGCTCACAGC-TGCACAGACTGTCAAGGCAGAGGCTTCAG-GTGTTGACCACCTGCTGCTGCTCAGCTGAAGCTCTGGCActggctttggtttgttttctttctgtacttGGGATTTGTTGAGCCCGATTTATAATCTcacatttatttctattaaacATCACCTC-CTAGATTCGCTTATCACTTTGGCCAAACC----CTTTGAACCTTTGTTCCATCATCAGTAAATTTCAGCTCACTACATTATAGTTCACTGGCATGATGATGAGGAAATTCCTAAGAAACAGCATGAGTAGAGTCATCAGGGACTCAGGGTCCTAGAATCAG----ATTTGTGGCTGAATTCTGGCTTCAATACTTAGTACCTTCTGATCTTGGGTAAAGAAGCCAAGCACAAGgcatttaaattttccatttgtaaTAGGGATCATGGCAGTACATG----------GGTCACCACCCTGAGCTCATGAAAGTACACCTGACACAGGCAG----GGCCGTAAGTATAACCTGTACAGCTCCAGTCCAGTTGAATAGTCCATACTGTTCTCGCTGAGAGGAAAACTGTAGACAGCTACTCTTCCAATTGCACCCCGGGACGGTCCATCTGGCATTCCGGGACCCATTCTCTGGGGGAGGACTGGCTTATTCGTGTCCT---TATGTGTATACTAAGTATATAATTTCCACATAGAGTCAAAAGGCTTGAGCCAAGTGTGAGAACATTTGAGGCACCTATCTTCCCAGTGGTCAGGAGTTCAGTGGCCATCCAGCAACTGTGCCCATCCTTGGGATAGATGCTGTGGAGCCTCACGCTGTGGGAAGTGTCCACTAGGGAGTCTGGTGTTTAGGCAGCCCTGGGCAGTGTCCCTCACACTGACTTTCTCTTC-----GCAGACACCCCTTGTTCTGGAGGTTCCA-TAGCTTCCACCTCTGCCTTCCACACAGCCTGCCCCAACTTGACCTCCACTCCCAAAT--GACCAAGGCAAGTGATCTTGTTCTCTCCTGAAG-CTGA---CTAATCTACTTTCATCAGCATGGATAAACAACAGCCTTACGATTA-----AGAATAGTGTGTGTGACATGAAACAGGCTCTCAAGGAATACATTTCAAATGAGAGAGTGTGATCAATTTGGATTTGCAAaagagtattttttcttttgatgccaGGTATTCCTCAATTTATGCTGAAGTTATATTCCAGAAAACTCACTGTAAATTGAGAAT---ATTCTTAAT---TGAATTTGTATTGGACAtctcaattt---ttcaaaaagaaaatgtcacaacACACATAGTTTTTCcaattttaattaactttattcATAATTCTAGAATCAAGTAGAAGTCTAGaccaaaaatatttcagaatgttcCTCTCCACCCAGGCCAGGTGGTGCTGTTatccagaaaaaggaaggaaagtacaGAAAATAGAAGTGAGGTACAGACACAGCCCAATGG--TTAAGCTCCCGTTTGTCT--------------TTTTTGAATAAGATTTGAAG--AG----TTGGTGGAGATTGAGCAGCTTGTTACAAAAGTAGGTTACGGTCTGTTCACACATC-AAGTTAGGTTACAATTCACTATGTACAGAGAAAC----CTTTTGGCCAGATTTAAAATATGTGAGGAGGCAGCTTGAGACCAAACAATCCAGCATAACACTAATGACTAGGACAGCTTAGCAGGGCCGTGCACTGCAGCCACTCTTTGCTGTTCCGATGTGGTTGACTGGGTGCTGCACCTGGCTGCTGTTGCCCAGCATCTTGAAAGTGTATCCAACCACATACCGCGTTAGCCCAGGAAAAggtcaaaattcaaaattagaaGTGTTGTTTCTACTGAATGCATATTGGATTT-TGCACCATTACAAACTGAAAATTCCTAAATTGAACAAAGCTAAGT---CAAGACCAAGAATATTTCTATACCCCCCAAAACTAAGACTTTCACAACCAATGCTTCTAAAAGGGGGCTTAAGAACTTCTCTTGGAAGTCAAAAATAtgcataataattttcttttctttgt-------------aatgcTAATCCTCTCAAAAGCAGTGTGT------GACTGGACCTAGAGAAGGTTGGTGGCTGATATGAAAGCAGTGGGAGTCACAGGAGAGGCCACCAAGAAAGTTC-AACACATATTCTCCTTACATAATACAGGTAAACCATATGAGCATTCTTACTGCCTATCCAAGGATGTCAGTGGAGATGCCACCAACTCACCTCTAGCAACTCTCCGTCGCCACTATCCAGTAGCTTTGAGCTCACCTCCGAAAGCAAGGTCTTAGAGGTCAGGGTtcccacaaaacaaaatgaaaataaatttaaatgtaagatCTTAATTGGCTCTTATTTGTGATTCTAGAATCAGACAAGTTTctcattctattttgttctgat

a score=68107
s chr3           100532614 4704 + 160039680 [encoded data, 5462 characters]
s HiC_scaffold_1 110440398 5144 - 233722169 [encoded data, 5462 characters]

a score=159531
s chr3           100562022 5842 + 160039680 [encoded data, 6315 characters]
s HiC_scaffold_1 110498323 5966 - 233722169 [encoded data, 6315 characters]

a score=13006
s chr3           100568404 1111 + 160039680 GATATAAGTGACTGCAAA-CGAAGGTGGAACTGTATCCTCTGCACTC-GGTGTCGCGTACCAATGGG-CTGGGTTTGGAGGAGTACACAGTCAGAGCTTCCCTCAGCATGTGAGCATTACA----------GAGTGCTAATATGAACTAAGATGG--------TCAGCAGGTGGCAGAATATGTGGGACCCCTGAGGAATATGTGGTCCACCACTGGCCAAAACATCACTGCCCAGAACACCACGACGACGACGACATTAACCAGGGTAGTAATTATCCAGTCTAACAAATCTGACAAAACAGCAACGAAGCACTCACCTAATATACTGCAATAGAGACT---------------GACAAAAATAGGAAGTCAAAAAA-------TTTGTTGTTGCTGCTTAGTACAATTTGTGTCATAGCTCCCTCTACTGAAGCACAAGAGAATGGCAAGG-CATTTTAA-------------------------------------------------------------------AGTACATGGTTT------------TAAAAGTGAACAAATGATTATA-ATTGCTTAAAA---------TTAAAATT-CAGTGTGTGCCAGTAACTAACCCTTGGATTGCACTGTGACAGGTGCTAGAAGGGCTGAAGA--------CGGAAACTCATGGTTCCAGTACTCTGATAGAGGCTCA-----AGGAGACTAAGTGACATGGATAGAGCAGGTAGGCAGTGGTTGCTACCTGACATCATGGTGTGACAGCGG--CTGTCACAG---TTTCTTGAGTCTTAATCGCTTCCACAAAATGTTTTCCATA----GCAGGGGCATCAGTTCTC------------TAAGACAGGCAGTGACAAGATGCGCCTGTGAACTTGCTACCACTGTGTACTCTAGAACCCAT--------TAGTAAGAAGCCCTGTT-------Gaatcct----ttgagacagtgctgatgcatgctccagcttgagacccactgCTGTAAGTGTCCTG--CGTGTGTAACTTCTAAGCAGAGTTCTATTGTTTCAATGGTCCTT--CTTCA-GCTCATTTGAACCCTCAACTCCACTGAAAAC-AGCCCACAGCTCTGATCCCTCAAGTTTTCACAGCTGACCCTGGCTCTAGTTTTATCAGTTCCTCTCCCAACGAATAGTCACAGTTAGCACTAAATGACTTT--GAATCTAGCCCCAAGCCACAGCCAGGGAAAGATGTGGG----CTACAGTCTTCTTAACCTCACTTCTACTTTTAAA-GACCTTATAAAA
s HiC_scaffold_1 110508216 1273 - 233722169 GGTAGAAGTGACtgcaaaatgaggaagaaaatgtcCCATaagaagtcctatatcacttaacATTGGGGATGTGTTTAGAGGTGAGCACTGTTAATTTATTTCCTCACTGAAGAATATTACAATactacagagaatactgaca--AACCATGATGGCTTCAGTGTCACTAGCTGAAATAATTTAAGGAACCACTGATGAATATCTGGTctattactgacaaaaatatcatTATGCAACATA------------------TGACTTGATGGGCAGTTATCCAGGTTTAAACATTTATCAAAGTA-CAATGCATTATACACTTAaagtatttcaataaaatttttttaaaaagtaatagccCAAAATGGAAAAGGGAAATAACATTTGTATGTTATTTCTACACTGTATAATTTGGGTTATAGCTCCCTCTAGTGTAGTCAAAGAAACTGGCAAGGATAtttcaaaacagttttttttttttttaaattttatttaaagaaagacgaaacaaaacagaaaacggatacaaatagtacatactttcaatgGAAAAGATAAACAGCAATAAATCACTAGATGATGTTTAAAACAAGcagttttaaaactgaaaaatttgcTTATAATTAAATGACGCATCGAATTGCGACAGGTCCT--AAggagtaaacaaaacaaagtagaaactC-TCGTTCTGGTCCTCGCCTAGA--CTCAATTAGAAGAGACTGGATGACGTGAACAGAACAGTGAAACTGTGATTTACCACCAATTTTATGGTGTGCTGGCTGTTTTGTCATGGTTATTTCCTGAGACCTTGTGGCTTCCAC-AAATGTCTGATAAAGACTGAAAGGCCAGTAATTATCAGTGTCTGCTCTTTGGACCG-------CAAAACAGATCCAGAAATCTGTTGGAAATGCCAACTCTCACTCCTGTTCTAGGTCTACTGATAAGACATGTCAGAACAAGAAATCTGTAGTTTAAAAATCGTAGGTGTATGCTCAAGCTGGAGAGCCATTTCTGTAGCTCTTCCAGCTTTATATAATTCCTAACGAGAGTTAGCTTGTgccatttgttttttcctttatgggtACCTGAACCTTTGACTCTGCTGAAAACAAATCTATGGCCCCAACTCTTCCAGTTTTCACATCTTAACTCAGTCCTCTTTTTCC---TTGCTTTATAAACTTTTTGGC-CGGCAGGTATTAAATGAGTTCTAAAATCAAGTCCTAAACTCCCATTAGGAAATTAGGAAGGTCTAttattctcttctctttcccatcCCTACTTTTGCATGGCCTtctaaaa

a score=22248
s chr3           100574750 3935 + 160039680 [encoded data, 4594 characters]
s HiC_scaffold_1 110515214 4082 - 233722169 [encoded data, 4594 characters]

a score=21410
s chr3           100581677 617 + 160039680 GTTAAACATTAAAAAGACATTATAAAAAT---ACTGCTTATTTTATAATAATCCTGAGATTGCCTCTTAAATAGCTCCTTATAGTTATGTAGTAGAATACCAAGTGCATACTTTTATCAAAGTGCTAATAGA-----AAGTAAACAGGAGTGTAAGTCTAGCTCCTACTGTTCAAGAAAC---AAATGA-GAACAGTTTCTGCACCAGAGAAATCAAAG-TGCAC---AGTT-CTCAAAATCAAGTCATGGGGAGGAGGACAAACGGTAC-AGGGAACAGCTCTACCCAGTGAGC--ACAGACAAGAGGAGAATTTGGCGTATTTACCAGTGCTGCTTCCCAGCCCCACTGCCTGTATCTTGGGTCGTGGGTAAATCGCCATAGATACCAATAGGTTTCAATTACTTCTGGACGAAGGATGTAATACTTTTCAGCCTGCCGCACAGCCACGGCTTCCACTGCACCATCAAACTTGAATGACTCCGGACCTAGTTTCAATGCTGTAACATTAAAAAAAGAAAAAAAAAAAAGCCACATAAACAATGTGTGTGATTTAAGGAATACTTACTGTTCTTTCTAAAAGGA--AGGGGTATGAAGTAATCTTTATCTTTTGTGACTTTTCTTGCTTCCTGTTTTA
s HiC_scaffold_1 110521609 593 - 233722169 gtgaaacaaataaatgaatgtataaaaaataaactacttaTTTTATAACTA-CTAAAAACTGCCTTTTAAGAAACT----ATAGCTATTCAGTAAGA------GTAAATACTActag-aaattatttctaaatacagaacaaaacaagactcCAAGGTTCATTTCTACTGTTCAAGTAACTTAAACTGACTAATGgtttcttcatcagagaaatgaaaactgcCCTAGAGTCACTCAAAATGAAATAACGTGGATGAGAACATACGGCACCACAGGAGAGCCTGATTTAATATTCTTGCAGATAAAATGA-ATGTTGACTTATTTACCAGTGCTGCTTCCCAGCCCCACTGCCTGTATCTTGGATCATGAGTGAATCGCCACAGGTACCAGTAGGTTTCAATTACTTCTGGACGGAGGATGTAGTACTTTTCAGCCTGCCGGACAGCTACGGCTTCCACTGCACCATCAAACTTGAATGATTCAGGACCCAGTTTTAATGCTGcaacatgacaaaag--------------------aaatcatttgTATGC------AAAAGCTAACT----TCCCTAAAAGAATGGGGGGCATTAAAtaagttttgttgtt--ttatttttattg-tccttGTTCTA

a score=64875
s chr3           100586633 5650 + 160039680 [encoded data, 6816 characters]
s HiC_scaffold_1 110522921 5832 - 233722169 [encoded data, 6816 characters]

a score=32413
s chr3           100610138 1524 + 160039680 TGTTATAAATATAAGAAAGGATTAACAAGTGCATAGGTTaaaacaaaacaaagcaaaacaactcacaaacagaattaaaggaaatgaaacTGAAGGAGAAGATGCAAG--------------------TCCAGCTCTATGGGTCAGAAGAAAAATGTAGTTTTCTGTCTGAACTACTGTTAGGG-TTTACTGATTTA--ACAAGCTACTTAATTCGTGAGAATTCA--TCTCAGTCTT--CTTTCAGATCCATTCAAGTTC--CTGGGCAGCTGGCCTGGGAGAGAACTGTGTGGAAGCTAGAAACCTAA------------------------AGCCATCATGTGT----CTGCTTTTCTACTGACCACTGGCCTGGGACTGCTTATGTGTCAGATCTGATGAACCATG---CTGCGAGGCTCTTGTGATACTCAGAAACTGTGCATGCATTTTAAAGCACGCCTAACTCCCAGCCACTCACACATCCATCTCAGCAGTC------------------AGGCATCTGGGGGA--------------------------CATTTCTAACAGA------------------------------------------AGCTCACTCTAG----------AAGCAG------------------------------CTCCAAATAGAATCTAGAATACAACATGACCCACATGAGCGTCATACTAAAGCACTCACTAGGAGAAACTACAG-AGACACAGAAGTTCAACCTTTTATTTAAA-CTGTTAAGCAGAAAAACCAAGGTTTGCACTCTAACTACAAACATTATACCCATTCTAATCTC-TCAACAACTTTAAATTTAGTTTTATAAAACTTAATGAACTACTACTGACTGGTTTCTTATATTGCCTTAATTTTAAATCATTAAATGGCATAGGCTAATCAGTGTA---------CTTAAAATTGAGAGAACTAAAATAAAAAAGAAACAGAACCAATGGTTTGCCTTTAAATTTAGGTTCCTTGAGATACTCTTTTATATCTGTTGCCAAGTCCTTATCCTAAGAGAAATTACTAGCAATTACTCTCTG--ATTGCTATGTGCATGTCAGACATTATCATCACTCTAATTATAATACAGTTAGCCAAAGCTGAATGGTTAACTTTCAGTTCAATTAAATGTTTGTTTTGCAGCCTATTTATAGATATGACAGATGTATACTGCTCCAAGATAATGATGGAATTTGATACACGTTCCAGAG---CTGATATAAAACATACAAAAACACAAGAAAGAACAAATCAGACAATTTAGTAGG-ATTGCAGCTGCAAATGGGA-TATAAGGGCAACTTGCTAAGGTTTGAAAATCTGCCTGCCAAAACTCCCAATGAATAGCACTTTCTGTAGCATTCTCAAAATTAATAACTGCTGATGATGA--ATATATTGCAAAGTCATTTAAATTTACTTTGTGGA-GAAAAACAGTGACAAGAATTCTTTTTTTGATCGG-GCCTCTTCTTATGGTGA-----ACACAAATGGTGTCCTGGGCACCACTGTGAAGTGTGCTAGTGACTGATACTGG-TAGGTTCA-----ACAGGTGACCACAATCACTATTTGTTCCTAAAACTTTCTCATCACCATAAACTGAAACCTTGTGCAAACAACTCTTCATTCTCTTCTTTATTCTACTGTTCTGTTTTGTTCATTTGTGTTAGTCAGAGCTGAGCCATTTTATA
s HiC_scaffold_1 110543659 1663 - 233722169 TGCTGTACATCTAACAACAGATTAACAAAtg-----------------------agaatactttaaaaacagaattaaaggaactgaaataaaagggaaaaaatcaggaaaaacaaaaacaagaggtTTTTAGCATT-TAGGTAATGGaaaaaattcttttctgtgaCT---TTACAGTTAAATCTTTATGGACTTGCCATATGTGATCTGATTTAT-AGAATTTAAGTCTCAGTCCTACCTAGCAAATTCACTGCAGCTCTTCTAGGCAGTTTATGCAAAGAAAGACAGTGCAGAGGCCTGAGATCTAACATAACACCTGAATTTACCACAAAGGACAGCATACTTAAACCAACTTTCATACT------TAAACCATGACTGTCTACATGCTAAAAGAGATGAACCACGTGACTCCAACGTACCTTGGATATTCAGAATTTGATAATGTATCATACAGCACTCTTAAATATCAGTGATTCATACGATAATCTCAGCTTCCTATCATAAGCTTTTCTTGAGGTATTATAGGGAATTCTAGAATAAGatcaaatatgatacatttcAAATACACTATcttatgttttctctctttttttttggcaccagggatcgaactcacgactgcgtgcttgccaggcaggtgcttataccactaacCTAAATCCCGGGCCCTCAAATATACTATCTTATA-AATATAATCTACAGGATCATGCTATTAA--TTTCAACTAGAAGAATTAACAGCAGA---ATAAGTTAAAAAATTTACCTAAAATTATTAAGCAGGAAAAGCAGGATTAGTCTTGTAACTCCAAATAGTATACTGTTCTTATTATTGTCCACAATTTTAAACTTAATAGTATTAGCTTTTAAG------TAATGACTGATTTCCTATGTTTTCTCCACTGTAG-TCACTAAGTGGTATAAACCAGT-ATTGTAGAAAAGCAGCcgaaaattta---aactaaaa----aaataaaaagaattaatgacttgcctttaaatct-ggtttgttacTATA---TTTTATATCTGTTGCCAAGCACTTTTGCTTAAAGTAATTACCAGTAATTATTCTTTGGGATTGCTATGTGCATGTGAGACATTATCATTACTCTAATTATAATA------GGCAAAGCTAAACTGTTAAATTTCAGTTCACTTAAATGTTTGTTTTGCAGTTTATTTATAGAAATGACAGATGTATACTgcgcaaaaataaaaatggagtttGATATACTTTTTAGAAGcttttgtataaaatatacaaaaatattaaaaagaacaaattgaaTAGTTTAATAGGAACTGCACCCGCAGCAGCGATTGTCGGGGCAGTTCcctacattttaaagaatt--ctgTCAAAA---CCAAAGAACAGCTCTTTCTATACCATTCTCAAAATTAGTAACTGCTATATACTACTATATACTGTAAAgaactttgaatttattttatgaaggaaaaacaaagaacgTGTTACCTTTTTTGATCGGAATCTTTTACTGTGTTGAATTACATATAAAAGTCACCACTCTAATCATCTTTAAGAGTACTATTCAGTAGCTTTAATTACATTCACAATCATATACAACTATGAGCACAacttattttcaaaacttttttatcaTCACAAATACAAGCTCTGT---CGCAACCTCCCattccccttttccttc--cttttctcatctAAGC--TTCTGTTACTCA----TTAATCACTTTGTA

a score=40502
s chr3           100615682 3287 + 160039680 TTGTAAGACAAGTTTCTGAT-TACACATGCAACCACTACTTAGCTTTTGATGCTTTTCATCTTAGACATTTAAATA---AT----TATAACATATATACTG-CCATGAGATACTGCAGAAACTGAGCATAATTTTCCCACATTTGAAA----TTCCAAATATTAATGAATACTTAAGGGGGTAAAG-TTTACAATCTGATTCATCAAAATTACTAAGGTAGGCATCCAATCCAGTCAGTCGTCTATAACATAAGAAAATTACATTTTT---GTTTTACAAATACAGCTATC---ATCCTTTTGCTTTTT--------ATCTCCATTCAGTATGAGCATTAGCTTTA-----ATGTTTTCTTCAAAGTAAAGAGAAAAGTGAACTCCATGAGCTAATG------------------------------------GAGGGGTAAATCCAT---GAGAAAAATCAA-------GACAGCTCT-------------------AAGAGCAACTTCCTGAAAAGGA----------GCCTGCAGGACA-------------ATCCCTGGCAA------------------------------------------------------------------------------------------------ACCTCTCCAGCTC----------CCAGTAGGTATCCAGGCTGACAACATTCTGTATCTATCTT--AGTTTCTTTACTTTTAAAAAGAGAATAGCATTTATAAAA----AGCTACTAAAATTGT--AAGTTCAAC-TTTCCACATGAACAAT---------TACTGTTTGAAACCCAATACCTTTAAAGATGAATTCTAAGCTGATACTATTAACATT------------------------TTCCCACCAGGCTGAATAATTACTTCT---GCAGTTTCACATTAA---CTAGTACACTTCTCTATTACATTTATCACATTATACGCCAACCACTTCTAAGTGTTTCTACCTATCCTGCTAGCCTGGGAACTCCGTAAATCAGATCAAACGCTA-ACTCCTTCCCTATCTTTAGTCTCATCCAA----------CAGCTAGTGAAGATCAGGTG-CATGGTACCTTTGTCTTAGATGAATGACTAGACATAGTCCGTCCAATAGCAACTGTCCCCT---TTACCA--AAGTTTACATAGTTATGTTTATTCTGAACTCCTCATACAAAAATACTAATCTCAAGCAGTGCTCTTATTTACAGGAAGATATGAATAATTATTATGCATTATCCCTCAAACTGTTAACTCATCTTTTAGCAAAGTACATCCAGATACAA-AATGAAAATATCCTTGTGAGACACTTTAGCAATGCTTCCTTTTAACAAGCAGAAACTCAACTTAAGTAGCTAAAGGAGATCAGAGTCATGGGTGGCAGCAGCA-TTACCAGATAACTAGCAGGGTCAGGCCTAGGTTTG---GGGTTTTA--ATTCCATATGGCTCACCTTTCACTGTATCAAGCAAAGACTTTTTAATAATCA---TTTTAACAAGTCAGCAGTTGTACTAGAAATACTTACACTGACCCCAGCGCCCTGTTCTTGGGTTTAAATAATTTGGATAAAGACCATTTGGGCGTTCCATTTTCTGCAGTAGTTTCCGAATGTGCATGACCTAATCAAAATGAAGTTAAGAATGTAATTAATAAAAAGCAGGTGTCACCAAGCTTTCCATTAGCCTGCGGTCTGCGGTTTTCCCCTCACTTGGAACCTACACCC-ACCTTCTACCTTGCTGTGTGTGGTGGTTAGGAAGGGCTTCTGTTCCTTAAATGATCCATTAGTTTTATTAATGGATAT---GTTATTATTTAAAACTCAAACAGTA---------------ATAAAATAGCAAAA-TAAAAGAGATCATCACAAACATCACCCATATAATCCAGA---------TGTATCCCTGTATATATTAAAATATAAGAATA-----------AAAGTAACTCCAGA-------------------------------------GAAATGAAATCAG-----------------------------------AACTTTCTGGGAAAGGAT------------------------------------------------------------------TCATTTCGATTT-----------------------------------------AGTAAGTGATAAAGTAAA-TGACGTAAAC--------------ATCGAACTGTTGGGCTTAAATGCTCTCAAAATAAAGC--ATTCTCTAAGTTCTTAAAGACCTCCCTGAGGTTAATGGAAGGGGAAAAATCATGAATTACATTAAGAGGCTGATGACTTCCCCAGAGCCCTGACTTCT-----GTCTGTCTGCAGATTGGTCAGCTCTGTTAGCGGCTTTCAGATGGGAGAGCA------GTCAGTGCCACAGGAA-AGGTGCTCTATTTCTGAGAAGTTATTCTTACTAAAATCCGATCACTCAGCTTGAGTAGGTAACGTATCCATGCTGTCCTCACAGATGACTGACGACCTATGGAACCTCTAAGTGACTTAGAA---CACGCTCTTCCTCATGGGCATACATGTGTACTTCAGCCTTCTGGAGCTGAGC---ACACTAATAATTTTAAGCACAGTAATTCTCATCATCTTTTCTATGGCTGGGTTTGG----CATGGTGCTTTGGGAAGAAGCTTGAA-----------------------TCTCGCATATGTAAGACCACCATCATGTACCAC----TGCAATGGAATGATTCCACACGCCACGTATAGACGCTTCTAAATGACATTAGGAAAGATGAGAAACTTGGCTTTCTGACATCTGAAATTGTGTATAATACTG---TCTGTGTTCCTCAGCACATTATTTCCTTCCTCAGTGTGCTCTTAGAACAGCATTTTGCAGTTCTGTCTTCTTAAGTCATTCCTA-CTGCAAGCTCTGCTTTTCCCTGTGTTGCTTCCACTTTGGCCGTCTTTTTGGTGGTAATGTTTTCTTCCACTCTGGTACT--CAGCACATCTTACTGC-----AGGACCAGTTTATATTTTGATTCTACAAAAACTGGGCTATGGAGGATCAATGTT-TTTCTTATGGTGTTATTTGAACAGGATTTTCT----TTTTTTTTCTTTTTTCCTCCTGGTGTTCCATGGGGGCCCTTTCCCTCCTTTTGTTCTGATAAATCTC--TACAAATTCTGTAGTTACCCTTTTTG--GATGAATTTTTCATCACCACTTTCTCCCTTTTCAGGTCGGAGAAGACTCTTAAACTTATTATGGAGTCTATCCTGCCGTTAACAGATTTGTCTGCCTTAGTCTTAGGAATGTTGACACTACAGGTCTACACGACCACACTGACTCTAATCTGTTATCCTGACTCCAGTGCTCACAAGGAAGTTTTGACA-----TAAAAGACTGAGGTTGGACACAAATATAAGTGTGGTTCCCAGCCTCTGCTTCTCCCTGGTCAACCGAGACTGGAGAAACCTAGAGCTGCCTGCGACAGAGACATCTGTCACTCCTTCCCTTACTGAAGCTGGCAGG--CAAACGCAACTTCCTGCAGGACTGTTGCAAGCA-----TACTTTCCTAGCTTCTTGGCATACTTCTTCCTTCTAGTCCAAA-AAATACTGACCACCAGCTG--CCACCCT------------GGCCTC-------------------ACTGTGAACTTGCCTCCACAGATTTTAAGTGTGTG-GTAAACACAAAGATCTGTTCCTACCAC-------AGAAGTATCTTCTTATAAAATAA----TTCTTACTTTTTACAGTTGATATAGACAAACTGCTAAAGATTTTAA-GTCTACATGTATATTTTATAC
s HiC_scaffold_1 110548857 3624 - 233722169 ttctgagacaggttattaatgtatatatttcaata-tgtttagtgtttttattatttcatgttgTACACTTAAGTATgtatgttatataaaatatataatggctATAGGATAGGGCAAAAACTAAATATAATGTCCTCCAGTGTTAGAATATTTCCAAACCTTAAAACAACTCTAAGGagttaaaaatttataatagaatCTAC-------ACCAAC-TGGATATCAACTC---------ACACATGAAATAAGCAAACtgcattttttacattttagaaatatagCTTTCTGGATTTTTGTgcctttttagaaaatatttccatttagTCTAGACATTAactttttacttgtattttcttcaaattaa-gacaaaaatgacctacatgttttaaagaatttcaggaaaaaagaaaagtacatacAATGTACTGAAAGACAGATCTATCCTATGAAGATACAACTGTATGGACCACTCTGCTGGTCTTTCATGAAATGAAAGGTAATTTCCCAAAAATGATGTAAGCAACAATTTCATGACACCTGTTTCTCACCATTCTTGGTAGTCACACTGGCATGTCCCCACCCGCACTGGCAGGTTTAGCAGTGTTTtcaatacataaaatttaatactTGTTTCTTCTACTTACTATTTCACTATGACTTTCTTAGCCCAAAAATAACTCAAGTAGGTTTTACTGGGGGCAAGATTGCG-ACTTATCTTCTAGCTTCccacattttaaaca---aaaagtaCTGGTAAAGTCATAATTAATAAAATTCTCTAAGTTCCATATTTCCCAATGAACTatcattagtattattttttaaaaatcaattctcTCAAAGATAAATCTAAagctttaataataaaaattagtttttcCCCCAAACAAAATGCCTTCTTGTCAGGAAGAGGAATCACTTCTACTGCAGTTTCACATTAATGACTGGTGTGCTCCTCTCCAACATTTATCACCTTTTATTCTAACTACTGATAAGTATGCCTGCCTATCCTACT---CTGGGAGCTCTCTAATTCAGGTCAAGCCATATATATATTTCCTAAATCT-GTTTTATCCAAGTTTATATGGAGCCTGGTAAATAATGGCAGTCACAATGCCTTCTTC----ATGAATGACTAACCATAGGTTGGCCAAGAGCAGTTACCCACTACTTTCCTAGTAATTTAACACAACAATTTGTGTTTCAGACTCTTCCTATACATATCC--GTCCTACAGAGTGTTCTTATTTACTAGAAGATATGATGAATTAATAAGTATAACCTTTTAAACTGCCACAGTGTAtttcagcaaaataaatgaacatacattaaagaaaatattcttg--agACAGGTTATTAGTGTTTGCATTTTATGAGTAAAAT----ACTGAAGT---TACAAGAGATTAGAAACGCCAAAGGTAACAGCACTTAGTAGAT------CAGAGTTTGACATGAACTAATAAGGATTTTATAATTTCACA--GCTTACCTTTCAGTATAACACC-----GTTTTCCGGTAAACAACCTTTTAATAAAGCATCAAT-GTACTAGAAATACTTACATTGACCCCAGCGCCCAGTTCTTGGGTTCAAATAATTTGGATAAAGACCATTTGGACGATCCATTTTCTGAAGTAGTTTCCGAATATGCATGACCTCCACAAAATAAAGTTAAGAAC-caattaacaaaaag-aaatgtcaccaaagctt---ttagtttttgttttgtatttttc------ctgagAACCTATATCCAACCCCTTTCCCTTTGGTGTATGGTGGTTATGAAAGGCTTCTATTTCTCAAATGAGTcattatttaagtaaaataatatatggtcattatttaaaaattaaacaatataggtcttcaaaaccagacaataggaaaattgacaatggctaccataaa-gtctcttgttctcttcaaaatagctgtccataccttcatgtatgttgaaattaaacaatacaaaatagacCAAAActactctggacaaagaatagaagcattactggatttcatagcatgacgatatggaatcagcaatgaaTACTATAATGTCATTGTGTGTGacggacaactatttagaagaaaacaggagacatatggtagccactgttgataagttgtcttgctttgaaatctgtgtcacttacattgtattcttttgatctgctttgttctgttttgttatgtttacttttaccctctttaaaataagaaataaaaaaaattaatgtacacatacaaaaagtaaaatcaaactgTTAACTTTATATATTGTCCCCTTAAGACATATTCCTAAATTTATAAAAGATCTCCCTAAGGtttaaaaggggggaaaaa----aatacaaaagaagaggCTAGAGACTTTCCCAG------GAATTCTTTTGGATTTATCTCTAGACTGGCTGACTTTTTAAGT-GCTCTGGGATGTGAGCGTGTGGTGTTTAGGTAATATAGCAATAGGTGTCCTACTTtttg-----tatgctttttaaaattt---------gtttgaa-------------agTGTTATCTTTATATTTGGTGGGTAACT--TGGCAGGCATAAGGGACTTATAAAAGCACCTTCTTTCTTATAGGACCTTACACATTCTTCACTTTTCTGGACTTAAGCCCAACACAAATCCCTTTAC-CATAAGGTTGCCTATCATCTTTCATTTGCCTAGATTTTGCTATCACAGAATTTTATAAGTTGGTTCAGAAATGCTATCTATATTCCCTGTGTTCTATAGTATCTGAGATCTGTATTATGTACAACACGTTAAATTTGGGTAATTGCATGAATGAGTTTTAGAAAGttgtaaatgttatttaaaaaga-gagaactaTCACTTTTTGTCATCTAAAAGTATATATAATACTAAATTCTGTTTCTCT---TGTATCATTTCCTGTATCA------CATCTAACTAGCGTTTCTCAATTTGGTCTTCTAAGTCCTTTACTATCTGCAAACTAT--CGTTCTTTGTATTGTCCCTATTTGGGCcctt---------atattttttccttatgcTTTGTTTCTGACAGCACATTCTACTATCTTTGAACACTGGTCTCTCTGTTG----TACAAACAT---------GAGGGTTTATGTTGTCTCATACAGTGATGTTTGGTCAGGATTTTCTGATGGCTATTTTCAGTTTCCTTCC---------------------ACCcattttttttccagataaaTCTTCGTATAAACTATgtacttgttctttttttcaataaACTGCTCATTACTGTTTT------------------------------------------------------------------------------------------------------------------------------------TCTTGACCAAGCTATTCAGAAGAAAGTTTCCATATACTGTAAAAGACC--GGTACAATCCAGATGTAAATGTGTTTTTTAGCTTCTGCTTTTCTCCAGTCAGATGAGACTGGTTGGACTGAGA------------------ATCTACCAttcattccttttcttcattCTATAGGCACAAATACAACTTGACTCTGAGATTTTTCATTCAATTGTCATTTGTCTA-CTTCTCAGAA------CTACTTCTAGTCCAAAGAGATACAATCAGCCTGtggttttactctttatttatgaAGGTTCTCTTCAACATTACTTAATGAAATTCTGAACTT---TGCATGGGTCTCATTTCTTTGTGGGAACTTACACTTCTGTTTCTACCACACCAGGTAGAGttaaacttttataaaatgataCTTTCTTGCCTTTCACACCTGTTGGAGAGAAA-TGCTGA--TTTTTAACATCTATATTGATCTTTTGTGC

a score=18034
s chr3           100619461 851 + 160039680 ctgctctaaaataagcatttcttacttct--------tttgagctaagagctgtgttttg-cattcacaGTAGTTATTTGT----------------------ATTTAAATAGTCAAGTTCTAACACTCGAGTATAGTCTAGTAGTAGAGCCAACAGTC--AGCATTTGCAAGACCCTGGACTAAGATCCACTTCACCAAAAAGAAAATGAAAAAGCCAACCTTCCTTTAAAAATAAAACCCACAAAAACCTTTAag---actgtcttaaactatccagcagaataatcacatgctctgtaaacaaacagtacctcctctcttcctttgcaattattaacctttcta---aattttgttttcttgtcttagcacgctggctaCAGAGTTTAG---AAATATGATTAGAAACTGGAATAGAATTA--AATAAA---AATAGTAGTTACAAATTCTCAATAAATA-------CTTTAAATATGTCTAAGCAGAAAGAAATGTAAAAAGCAAAATAACCGAAAAAGGAAAATAAGCAATAAAAACCAAAGCC-----------CTGAAAACCTGTGAC----------GTCTTTTGGCAAACTTGTAAGTCCTTTATAC-------------------CAAACAGAAAGAGG-ACAGAGACGAACCTTATTATAGTAAGTCAAGTCACCGGTCAAGTAGCTGAGGTGCACAAACTCCATGTGCAGGGTGCCGAACTCAGCCAGGATGCTGCTGCCTGCAGACGCCCAGCCCCAGTTTCGACCTACTCCACTGAGTAATAAGGGATAGAAAGAGACAGGATTATTGAAAGGGA-------------------AACACATGCATCTTAAATAGATCTTAGaa---attatatctaatataatagtttatttt---aattttg-tttattaaaatttaaatCAGTAATAC-AATCAGGTTTTAAAAATTAAGACAACAT
s HiC_scaffold_1 110552398 894 - 233722169 cttttataaaatgataCTTTCTTGCCTTTCACACCTGTTGGAGAGAAATGCTGATTTTTAACATCTATATTGATCTTTTGTGCAAAAGTATTTTCTCAAGTAAATGTAGATAGTTAGg-------actgggatacagctcagtaacaGAGTACATGTTTTTAGCATATGCAAGGCCTAGG--TGCAATCCTCAGCAcgaaaagtaa-------------------------------------------tttttaagtaCACTGTCCTAATGTATT-AGTTAAaaaatcatatcatctgtgaataattggtatctcccttcttcctttttaattcttaaaccttttgttcatttttcttttcgtGTCTTACCAAGCTCATTAGGAATTTCAGCTCAATGctgaatagaaatgaaaacagaatttttaagaaatgtgatAGTGATTATAATCTCTCAAAGaataatagttattttaaatatgt---------------tgtaATTGAACagataatttaaaaggaaaaa-----aataagggccagaataatattttactattataaatattttactattaagCAAGTCTTTGGGAAAACTTTacaggcagacacacacacacacacacacacacacacacacacacacacacacggactgACCTTTTTGTAGTAAACCAAGTCCCCTGTCAGGTAGCTGAGGTGGACAAACTCCATATGCAGCGTACCAAATTCAGCCAGAATGCTGCTGCCTGCAGATGCCCAGGCCCAGGTTCGACCTACTCCACTg---aatgaaggaaaagaggaaacaggatt-tggaaaataatctttttaaatgtttaatgaatATGTAAACTTTAAAT--CTCTTAAAAAGTATTATATCCAACGTAACAGTTTATGGTTAAAATTTCGATTAATAAAAACATGAACAGGTAATACTTTTCACGCTTTAAAAGTaaagacaatat

a score=25767
s chr3           100631756 1090 + 160039680 TGCCACAGGTTCACACCT--ATAGACAAAGACCATTCTCAACTTGTTCTATGGTATCTGAGTATAAGGAGACCAACAGTCATATTTTCAGGTGATTT------TAAGATAAATAATAAGTACTACCTGGAAGAAACATGAACAGCAAAAATTTCAATCAGCATAAATGATTTAAATGA-AAATTAAAAT-TAGGGATTATTCAAATTTTTGACTTACAT---------------AAAGTAACACAAATAAAGTATTTCATCCATTTCTAAGT-----TTAAAAAA-----AAATCAGTGTTTTTGAATGAAATTGATAACAAAGAATAATTATTTTGAAGGCTTCCTGCTCAGCCTT---GAACCTAGACACTATAATGAGCATCCTACATCAGAACTGTGTGTTCCTTTATCCTTAGCATGGCATTCCAGAACAGACTGTCTTGATTCTAGGCACGTTGCTTTCTATCTTGCCTTA---GAACAGTAAGTAGTATGTAAGAAGAAAAGGGGGAGGGAAAATACTTTTAATACATTACAACACTAAACAGAATT---------------GGAGACAAGT-----------------------------------------------TACTAGCAACTGGAATGAAATTCAGGCAGAAGACCTGTCTCAAAGTAAAGGACAGAGCTT--AAAACTAAGGAAAGGCTTTGA-----TGTTCTTCTAAACGTACAAAGAAAAAAAAATAGT-AAGACTTGAAA-GCATAGTGGAATAGCTAATTGGAAATCTCCATGAACAAAAATGTC---AAAATTCAGTTAACAATTCTGGAACATAAATAATCAAATAAAATACTGTTTACCTTTTCAGGTTCACCATTGCCCAGGGAATCCCAGTAGGTGTGTTAAAGGCAGGAAGGAGTTTCTCAGCCAACTGCACTGCTTTAGTCTTGAATATCTGAGA---CGAAAGCACAAATAATCATCAATTATAG----TAAGTA---CTGCGCATTACTACCTCTTGCCGTATGCACACCACAATGTACACGTTATAAGAAGGCGTGTGGTAAGCAGTCACACATCATCC-TTACTA-CAGAGTACACAGGAACTAGAGTGGATA-----------CTGAGGAAGGTTTCCCAGCATGTGACAGCCTCAGTGGACACACAGTTACAAAGAAAGGGCATAGTTCTGGT-----CATCATCTGTATTTTTACCTG
s HiC_scaffold_1 110562569 1149 - 233722169 tgTCACTAATTAACACCTCCACAAATATAAGTGTTTCGAACTTTATTCTAGAGAGcctaaatacaaagaaaacaa--gtaTAATTTTCACATAATTTACAAACTGCAACACAAAGGAAACAATACTTGAAAAACACTGAAGTAGCAAAAATTCCAGTCAGCATAAATGattcaaatggcaaattaaaATGCTAATATCATGCAAATTTTCATTctatatctttaaattttttagaaaattaaacaaggaaaacaaatcaTCTACTATCAATTAGCTATCAAATCATCTATCaatcagtgtttt-------attttagaatgaaacATA----CTTTAAGAGTTCACT--TTGACTTTTAAGAGCATACATACTATAATGAAGACAATGC-----------------------------CATGA-----------AGTAAGTCTT--------------TGTTTTCCATCTTGACTTACAAGATCAGCAagtagtatataaaaataaaaggagaagg-aaagtaCTCTAAATCTATTATAGCACTAAATGgaaattaataagcaaataaaagaaacaaatatcgATCATACCAGTGCAGAAGAGAAATCTACACTTAAAGAAACAAGTAGTAAAAACCAGAGTAAAGTTAGAGGAGGTGACCTGTTTCAAagtaaagaatttatttttaaaaacttagaaaatattttaaagccatATTCTATTACATATATATGAAGAGAAACATAATTAAAGCTTGAAAAGCATGGTGGGGCAGATCATTTGAAATTTCTAAGAGTAAAAAGGTTTTTCAAAATCAGTTAATTCttccaaaacagaaataatctaaCA-------GTTTACCTTTTTAGATTCACCATTGCCCAGGGTATCCCTGTAGGTGTATTAAAGGCAGGAAGGAGTTTCTCAGCCAATTGCACTGCTTTAATCTTGAATATCtgagattttgaaaaaaagaatactaatgAATTTTAGCCATCAAATATCTTTGCTTACTACTATATCTCACAGTATGCACACCACAATATACTAGCTACAAGGAGGC-------AAGACAACAAGGATCTTTCATTGCTACCAAAGCATACAGCTGCTAGAAAAAATGCAAACTTGCTCCTGAGAAAAGAAATCCAATACGCAAAACCCAGAAAGTACAGttaactgaaatgaaaagacatgGCTTTGATGTTGGtgtcatttgtattttcacttg

a score=23946
s chr3           100644434 1029 + 160039680 AAATCTTTAG-----TTCAGTTGTAGTCAAATTACAAAAA-------------------------CATTTTCTTTTACACCATTCATATCTCTTCTAATCAAACAAACCAACAAAGTATTACTTGACTCTACTCACTTCCTCTCCTGACAGGTAATATGCAGCGAGGAGCCCTCCAATAAAGCGAATGTTAACTTCAAAGACAGACACTTCTGAATTCTGTGGAGACAAAGTGAAAATACACACATACATGTAGTACTTCACAGTTTTCAAAGTTTTTACTTTTTTAGAAGCTCACTGGTTTCTCATCTACAGTGTGT-----TTTGCTTTAATACTCTGCACTTCCATTTCTCATGTCACAAATCCTGACTTCCATTTGTTAGCTCACGCAAGTTCCTCTATTGTTAGCACCACAGCTTCCTAACTGCCAAAATCAATGGGCCATTT-GATGTACCCTACACAATCCTGTGAAATTATCCTAGGATTCACTACCACTGACTATTGTTGGTTCCTTGTGAAGGCCTCCACACTTCCTTAATAATGAATCTCAAATCCAAAAAATAAAAATAAAAAAACCTCCTCT---AATGATTCTATTGCATTTATTTTAATTATTATAGCATAAACTCTATTTCTATCTCTTCTCAAGAATTTTTAGTACTTTGCTAGTACCTA-------ATA-------------------------ACCTAATAATTATTAAAGGAGATGCCAAAGACCAGTAGAATTATT-GTTAATAAATTAACACTGTTG--AAAACCCACTCCTATGTCAGAAACCAGTGTTGACATTCACAGCACATATATATCAAAATGAAGAATGGatatataaaaattttaaaagaaaaataaataCAGAAGTAGAAGAAAATTTGACAACAAGCAAA----CTTAAGAAAGCACATAATGTGTAAGAATAAAGTAAA------AATTTTTGTAATATATCAATTATGAATTTGAAATTTCTCTAAAATGTAAATTATCTACAAGA--AAAGATCATAAACAAAACTAGAAGGCAAACAAACTGAAGCAAATTTATCACAAA------------AATTTACATATGTA-----ATACACAAACTATTTTGTACAATTT
s HiC_scaffold_1 110600292 1054 - 233722169 AAATGTTTAGATTACTTCAGTAATATTCAAGTTAGAAGAAGCAATATGTTGCTAgggaaattttccattttattaaattttcttcataattCCTCCTCTCAAA---GCAAACAATGTATGACTCATTTTCTCTCACCTCTTCTCCTGAAAGGTAATATGCTGCAAGTAGTCCTCCAATAAATCGAATGTTAACTTCAAACACAGACACCTCTGAATTctgtgaaaacaaagcaaaaacattcaCAAATATGT-----TTTACAGTTTTGTGAAATATTTCCAATACATAA---------TTTCTC----ACAATATGtaagaatattttttcagtttcggCA-----ACTTCAGGCAACTACAATCTCATCTCTCACTGTTAATATTACTGAAATTCCTCTATTACT--------AGTTTCCTGG-TGCCAAAACCAATGCACCATTTCCATATATCCTACACAGTACTgtgaaattaatat---atttaaaactgttgaCTATTGTCAGATCCTCAAGACAGCCT--ACACTTCTTCAGCACTGGATCCTGAGTTCTGG----------AATAATACTTTACCTATCAATATTTTTCTTAC--------TAATCACTACAGT----acgctttttatttttcttgtcataaattttaaatattttcataatacatatttttctatatatatatacggacacatatacatacacatgttaaatattaaatgagg-aataaaaaatggtggaattatgaATTACTGCATTAGTA-TGTTAATAAAACTGGCTTCTACGTAAGAAACTAGTGT--ACAT--ACAGCTCACATATAtcacaatgaaaaacaaatgattcagaaaagtaaaaaaaaaaaaaaaagaaaa----aagaaaatgtgacactATAAAAAATTCCTTAAGAAAACAGGTACTGTGGAAGCATAAACTAAATACTACAGTTTTAGTA----ACCAATGACAGACATGAAATTTCCCTGAATTGCAAGCTATCTATCAGAATAAAAATCATGAACCAAA-TATAAGGCAAACAAGCTGTAAGAAACTGGT-ACAAACATAGCACtattaatatatacatgtaaCTATATACAGAGTCTATATGTTCCCATTT

a score=13203
s chr3           100646409 750 + 160039680 CTAGTTCATTGCTTCTC----CCTCAGCTATTATGTCCTTAACTGGCTTTAAATAAT--------TGCAAGAAATAT-----GAAGACAGTGAGAAAAG----ATGATAAAAGTAACAAAACAAATGATAATTCCAAAAGAAGAATGAAGACTTAACACAG----TTCAACAAACTGCTGAGACCATGTTCACAGCACCACAACTGCTATCTTCA-CCCATGAGATctactttaacaggacagcattcaccatatgcagttgataactaatagaaatgttcttctcaccttcctggaatctggaaagtccaggatcaacagcaccagcagattccgtaactggtaagcgccactcaactgattcacaatggtactt----acatgacctcgcacgtatgaagcaaagtagttctctgagaactacattataaggaactacttatatccataatagctctgtcctgatgaactcatcactacccaaagaacctttccagttccaacacatgagtgattaatatgaatttaagaggatacaaatatcccagatcagagcaTTAAACTGTCCTTTTATAGTTAAGGGATTAGATAAATTGCCAAGGTATACACACCACACTGAAATCAAGGTTTTCTTCAATCCATCTTTGCCCATCCATGAATTCATCATGAAGCCCCATGATATAAAGGGTATCCAAAGCATCCACTATGGTGGCACCCATCTGTGAGCTTCCTATATTTAGGAGGAAGAAACAGCTGTTGTTAAAAACATCCCCTTCAgg
s HiC_scaffold_1 110605352 677 - 233722169 CTAACTCATTGTTCCCCATCACCACTACAATTATTACCCTAATGCACTTAACATAACGCTTCACATGCTAAGGATGTAAAAAGAAGACAGTGAGAACAGGCATATGTTTTATGCAAAAAAATAA----CAA--CTGACAGAAGAAACAGGACTTGGTATTGAGATTTCTTTACACTGCTAGTACCATGCTTAAAACTTTGT---TACTCTCTTAGGCCCACTAGACATGCTATCACAACATACCATAAAC--TGGGTAGCTGCCAA---ACAGAAACTTATTTCTGACAGTACTA-AGGATAGGAAGTCTAAGATAAG--GTCCCAGGAGGTG----ATCTTTTAAGCGCCGACTTTCTGGTTCACA--GATACCTTTTCACGGAGCCTCACAG---------------------TGGCAGCTGTGTTACAAGG--------------------GCACTAATTTCACGCACCAGGCTCTACC----------TTCCAATACTACCATAGTACCATTAGGCATCAACATAGGAA------------CCTGGT---AGTAACAAAATGTCTTTCCATAGTAAATCTATAAGAT---TTT------TATACTCACCACACTAAAATCAAGGTTGTCTTCAATCCACTTTTGCCCATCAAGGAATTCATCATGAAGTCCCATGATATAAAGGGTATCCAAAGCATCCACGATGGTAGCACCCATCTGTGAACTTCCTATATTTGGATGTGAAAG-----TATCATTACAATTATTCTCTCCAAG

a score=18286
s chr3           100652156 644 + 160039680 ATAATATATCTCATAGCAC-ACTGGAACCTCTACACTGCTTCCTTTTCCTTTA-----TGAGTATTAATAGTAGTACTTTACCGTCTTAAAGGGGAAAAATTGCA---AACAG--ATATCTACTTTTCATGACATTAAACAAAAGAAAATGCAGGGGGAAAAAGACCTTCAAAATACTTAGATAAAGATATGAAGTACCTATGTGTAAATAGAGTATCTAACACAAAGCTATGTATTTCAGTGCAACTAGAACTAAATCTTGACACA----CAAAAACA-------AAAAGTTCATATTATAACTGCACAGAATC--------------------AGAGACCTTGGAGAGTACTTTTAAAAGCCAGATTTTGTTTTAAAAGATAGGAGGTGGGGGTGGGAAGTAATTCAAAGAAGTTACCTTACCGAATATGTTAGTGGAATGGCCTTTCCTTGCAATAGGCCTTAGTTCATTATGTCCCCATCCGTATGTTCTGTAATTATCCCAGGCATGTTTCATCATCTGAGAAGAGAAAAATTGTAATACACCATTTGAAGCTATCCACAAACTGCTTTATTCCTCATATAATTTAGAGTTGGGATATTATATTTTTACCCATTCTGCAATGTTTCATACACTAGCATATTACTCAATTAA--CATGTTTCAGTATAAAAACACA--CATACCTA
s HiC_scaffold_1 110611695 608 - 233722169 ATAATGCAT---ATAGCACTGATGGAATTTCCTAGCTGTTCCCTCTGTCTCTACAATGTAAGTATCAGAAATAGTACTgtgctg----aaaggaaaaaaaaagaacgaaaCTGCAGTACCTACCTAC--TGACATTaaa------aacactcag-----aaaaaaaCTTCAGAACAGTT----------------TGCACATCAATAAATAA-----CTACCACGTAACTAT----TCCAAAGCAGCTAGAACTAAATCCTGATGTAActgcaaaaatacataaataaatgttcaaattACAGCTCCACAGAATTTAGATAGTGCTTTTAAATAAAGTGATTTTAGATAgtgctttaaaaaatcagattatgTTTTAA-------GACATGGAGGCAGAAAGTAGTTAGAAAAAACAGACTTACCAAATATGTTAGTAGAGTGTCCTTTCCTTGCAATAGGTCTGAGTTCATTATGCCCCCATCCATATGTTCTGTAATTATCCCAGGCATGTTTCATCATCTAAGAGGAG---AATTGTAATTCATCCATTTAAATTATT--CAGACtgttatatt--tcatataattatGGGTTCCAAAACTATA----------------------TCCTACATT-GCATATTATCCGATAAATGCTTGTATTTGTACAAAAACACATGCATGCTTA

a score=24759
s chr3           100655699 1052 + 160039680 TTTATGAAAGGCTCTGCACAGCATCTGGTATAATCCATTCAAACTGAATATTT--TAAATTGCTTAT------------------------TCAATAA--ACTTATACACAGATCTTACTCC----------TTTATA---------AAACCCTGGCTTCAAAAGATCTCTAGCATGGTGAAGCCATCTAACCATCTAAACAAACTT--------GAGCCAATTTCAAAAACTTATATTATGATCAATAAAGAAAAAGAGAGCCCTCCAATCCTTACAGTCACACTGAGGAATGAAC------------------GGATGTACACACAA-------CACCACAG-----------TGTCCAGTCAGCCACAAAACTGCATGTCT-------CTGGATCACCAACCTCAGCTTATTACCTCTTTAATTTTGTCTCTTTTCTTCTTGATCTCCATGTCTTCTGGATCCCCACCACTGACCCCTACACGTTGTGGGACAGGGACAGGCGGCAGTACCCTGGTCTCTTTTGTCTTCATTGCTTGGGCTACTTTGTTTTTCTCTGTCTGAATTTCTGCACGGATTTCCTCTCTTGACTTTCTTAATTTTTCTTTTGCTTCTTCCAGGGCTTTCTCATGGTCAGCTCTAATCTTATTTCTCAGACGCTCTTCTTCTTCCCTGGGaaataaaaataaattaaaaaaaaaaGGTCAGAGTAGTACTT----------AACACCTTAAAATTC------------TCCTACTAAACTCTAAGGCTTGTTTTCTAGTCCCCCACATTAAAAGGTAAAAATTATCGGTAGCAGAAAGTC--ATCTGCTCAAAGAACAGAATATATA-------------GAAGAAAAATGTATTCTAGATGCTGAGTTAATATTTT-----ACAATGAGAGAGGAAGCCT--ACAAAGAAGTTCTAATTC---CACAACAGAGACCTGAGGAACTACAACCAGTAACTTGAAG--GGATCCATGGAAAGAGGGCA-AGGATGAGGCAAGGAGAACAAGAGGGCAGCGAGAAGGCAGAGC---AAGTCAGTCAGTGGTGGTCAACAGCAGAGAGGAGACAA----CATGAACCCAGGACCAAGGAAAGAAAGAGACCAAGGGAAATTAGAGGTGGAAAC-TTTCATTTATT--TAGTACAGCATATACTGCTGAAAGT-----ACTCTACAAATGGC
s HiC_scaffold_1 110620829 1169 - 233722169 TTTTTGATAAGACTAGCATAGTACCCAGCAGAGTCCCTTGTAACTGAGTATCTAACAAATTGTTTATCAATGGTAAATTGATAAATGTTTATCAATgacaaattataaatgaaatctaCTCAATTTTACAAATTTATAGTACTTGTTAAATGTTGAATTTCAAGATTTTTGAACACATCTCAGtgatataaacattaaaacaaccTTTTATCAAAAATTCAATTGCATAA--TTGTATTACAATCAATA--TTAATAGACAGACCTATAATCCTTACTGCCAACATGAAAACTAAACTACAACTATAATCCAAGAAGAAATACAATCAAAGTGTGACACCACAGATgatacaatatatatatttgcatctaAAGATACATCTATAATTAGTCTATAGCACAAATTT-AGCTCATTACCTCTTTAATtttgtcccttttctttcttatctcaATATCTTCTGG-TCTCCACCATTGATTCCTACAAGGTTTGGAATAGGAACCGGTGGCAGTGgcttgttctcttttgtcttcatttcttggactattttatttttctctgtctggaTTTCTGCATGAATTTCTTCTCttgacttttttaatttttcttttgcttcttccagggcCTTTTCATGATCAGCACGAATTTTATTTCGTAGACGTTCTTCTTCTTCCCTG-----TAAGTATAG---AAAAAAAAGTGGTAAGTGTGAATCTTTGTAAGAATGTGTACcttaaaacacaaaactaaaaagtTCCACCAAACACTGATGAGAGTTCTCTAATCTTAC-CATTGAAAGTTTGCAATT-TTGGTGAGACAGACTCAGATCTACCCTAAGAATGGGCTAAATGTAACTTGGTATGCGAAGAAATACAAACTCTAGATACTGAA--AACACTTTGAacagtaaggaaaaagaaaacctagaCGCAAAAGTCCCACTTTAGGTCTAAGTGAGAACAAAAACATATCAACCCGTAACTTACAGACAGATACatgcaaaataaatacagaacTGTGCAA----Aactaaaaggaggagaaaaagtgaaatataaaattagt--------------aTCAGAGAAGGGACAAAAATTATAAACGTTGg-ccaa--aaggaaagagacaaag-------agagtgGGAAATGTTTCAGTTGTTACAAGAACAGCCCATGCTTCTAAATCTTATAAATTTTAGAAGTGGC

a score=33349
s chr3           100680715 3057 + 160039680 GAAATAAACACACATAACTCTCAAGTATTCAATTTGAACTAACATGATCCTAACTAAAGGATAA---------TTTACAAATATATGTTCAATGTTT-----------------TAAACA--AACACATGGGGA-GGTCA-------ACCTCATTTGTACAATGTCATTATATAAGC--AATGTCAGTTTCAAATGAAAGACTGAAAAATGAAAGGAAACTGTCTATACAC---AAGTTAAAAAGATACCCTTTATGTAAATCAACATATATTGTAATAACATAAATGAGCAGTATAACAAATTCCTATTTGTGGTGATTTAAAATCACAAATG-----TAATTTTAAACTATTAATACAATTTGTGCTATTATCACCTTGACAGTGGACTGGTACTTTAAAAATGCTTTATAAACATATAAAAAGTTTATTGAAAAACTGTGTAAGCTACTTAA--CAAAAGGGAACATGCTAAGCAAACATTAACCACATAAAATCATTATTAAATAAAGGCAAAAAATTGTAATAAAAATAAACAAAGGCATTAATAGAAAAA---AAAGTTTGTATTAATGCAAGACCATACAAAAAAGAAACTCAGAAGTTACTTTCCACTCTCTCC---TCCTACCTT--------AACTTCTATATTCAGCCAACCAC---------------------------------AGGTCCCTAAAATTAACTTCATTTCTCACTAATTTATCTTCTCTCACAGAATTACTAATATGGCCACAGTCAATTTGCTGTGTCCTAGACCCTCAACCTTGGTTG---TCCTGCACAAAAGTAATTGGTTTTGTTTTTTTAAA-TTCAAAATGAATTTTTTTTTCATTTTGCTTCTGTGACTTCCCAGCAGCTACTCAGAATGAAGACCAAAATACTTAGCAACAG----TCCAG-------CCTAGAGA-TGCAAACTTAACCACTGGCAGGCTGAGCATTGATTTATTGTGT-------TACTTGACACCTTAAGTGAgtggcataaaatggagagcgcacgcctgtca-agagggagcc------agattccgactgagtgttagccatcggaaaatagacacttgagtgttgc----------------tccagtcgcaaatt--------tttttaagaaaagccagaaatctagactgtcacatgaa-tctcccacgttgtgcatgccaggaactaattcaaGCTTCTGTAACTAGGGGATAGGC---AGGAAT-----TGTAAATCCACATCTGCCCTGTC---TACTCTCTGCACCTGGCCACACAACCACACTGTCTACCTCGTCAGTCACGGGAACATTTCCTGTACCCGTAAGAACGCCAGGTTTTTCCCACTAGGGCTCTCCTG--TGCAGC------CTGCTTGA----CCATGCCTCCTCCCATCACTGCTTCATCTAGCTTTCTTTTTCTCACCGTTTCAGAGCCCCTTCCCCCTCAATGAAACCTTCC-TATTCTCATTTCTCTCCCCCTCCACTCCAAATGCTGGACAGTCACTCC-CTACAAACTCTGGTTGCTCTGAGTACAACTTTCTAACAACCA----------AAACCAAAATCATTGAATCCCTGAATCATTAGCCCATCCACACAGGAGGCTCT--------------------ACATGAGCAGT---------------------CTGAACAGTAGATTATTTG--------------------TTGTTAACTAATAACA-----------GTTATAAAATA---------------------ATGTCATTATAAAATGTTCCTTTTGATAGAAACATTCTGGTGTACTCTTTAAAATATTTATCAAACTGTACCTAGATTTTCAGAAACATAAAACACTTAAAGCAAAGTCAGAATTCAAACATTCCA----ATTATAAGTGATAATAACCTAAGTCTCCCTGACAACTGGCTGAAG-TTGTGAACTATATCAAGGACTCGCACGTATTATCTCATTCAGTACAGCCCATAAAGTAGATGTCGCTGTCATACAGAGGAAACAATTTGAGCTGATTAAAAACTGGCTCAAAAAACAAAACAAAACA--AAAAACTCACAAATTTTAGTCAGTGTAAAATGACTAACAACTGAACTAAAACACCAAGGTACTACACTAACTATGCATTCAGAAAGAAACATTATCCCAACGA---------GTATCTCTTAAACACTAGTAACAAGAATTAA-----TGCCCTCCAT-----------------------------------------TTGCAAGG---------------------------------------------CTCCCCAACCCTGT--CCCTAGCATGCACACAACACACACACACATAACA-CAATTTTTACCTTCTAAGATA---------------CTACACACAAAATAAGTATGATCTTAGTTACAAATAATTCTATA------------AGACTATCTTTCTGAATTACTTTTAATCAAGATCATATTTGCACATTAGTTTC----TGTCATTTTAAACGTA-TTCCTTGCTCAAAGTAAAA-----TTATTCCAAGCA----------------GACTGT--TTTCAGGTGAGAGGAAGCAACAACAAAGTGTAAACAAAGAGCAGCACAAACTGTTCCTGCCACAG----CCAGCGTTAGCACTGCCTCCTTCACTGCTTCAACTCCCCACACAGGAGTTGATTCTCT---GAGCTGGTAGGCAAGCAAATCCAACAG-----CACAGTGTCCTTTCCGTCACCCTGACTCTTCCTATCCCAAGCTGAAAATGCAGCTCAATAACCACCCCTTGGCCATTACAACTCTGT-------TCCCACTGCCAAACTCAGGAACCAGGGGTTCTGAGTAACAATAAATACACACATATTCCTGGGCTCTAATATATGTATATTCCTGGGCTATA-AAGTTTAAGAACTGTTACTTATGAGACTTA-AACGATTCTTTTGAATTTGTGCAGTACAATGAACATAAACACACTTTCATTTGAATGT---ATTTTAACTTCAACTAGTTGAGAACTTTTCTTAACTCTCTTAATATCAAT---TTTAAAGTAAAAATTTGCAAACTTCTAC---------CCATATAAAATATAAAGGAAGCCACTTA-TCAGTACACGACAGCAGATCATAATAGCTAAATGACATTAATACATCACTGCTGTCAAAA----------AGCTCTG---AACATTTTTTTCCCAAATGTTCATTGCATCATATATACATACCATGGGAAATAAGG--TCCAGAAAAACAACGTTTCTTTTTCAGCAAATATTTCCCAGACCAAGTAAGGT--TTTTCACAGTTACA--AAGCAAGGGAAGTTTTAAAGAAAAACCTCTTAAAGTATGTAAGTTGAAAATATCAAATATCCCAAAGTATAGAAAAATGGTATGAAACTGTATTATTAGAAGTACTCCAATAAGGC----CAAAAGTCAATGAACTAGCAAGCAAGTAAT
s HiC_scaffold_1 110652932 3197 - 233722169 gaagaaACTATACCTGAGCCTCAAGCAGTCAATTCAAAGTAACAAAATCTTGACTGGAGAATGAAACATCAGCTATCCAAATAAATGTTTAA-GTTCATCTACAAGCACACACATAAACATAAACACATGCGCACGGGCACACACAGAGCCCATTTATACAATgccattaaataaaacaaatgtcagcttcaaa-------------aatgaaa--aaactatA-GTACATTTTAATTTCCAGGGTGACCCTTGTTGTATATCAGTGTATATT---ACAACATTCATGTATATTAAAACGAAT-----------GTACTTCAAAATCAGAAAGGAATAGTCATCCCAAACTATGCATG----TTGTGTAATCGTGG-------GGGGGAGGGGGACACTGGA-------------------------TTATTG----------TAAACTGCTTAATCCTCATGTAAATATACTAACT---------TCATgtaaaat--------------------aaatt-------acacaacTTAAGGCATTCATTAAATAATGTAAATGTCTTATTAATCCAAGGCCAGGCAATCCAGAAACTTAGAAGTTATTCTAGGCTCCCTCCCTCTTCTACCTTTCTATATCATCCCCCACAGTTAACCAACCATTAACCATCACTTTTGATAAAATCTACTAGTTTAACAACTCTTGAATTAACTT--TTCTGCATTAATCTTTCTCCTTCT------CTACCAAT-------CAAT--ATCCTCTGTGACACAGAGACTCCATCCTACTTAGCACCCCACACAA---tgattgtttaaaatgtttaaaaacttaaaatgatCATGTCATTC-CCTTGCATCAATGACTCCTCATAGTATacttagaataaa-accaaatcactTAACTACAAACGCTCCAGGATACTCCGTGGGGACTGCAAAGTCAACAACCACCAGGTTAAATACTGATTtgctatatatttattcatttgacaCCCCAATTCAGAGGCAAAAACTGGACAGCACACGCCCCTTATAGGAGCAGCTGCTACTAGACTCTAGCTGAGCGTT-TCCATCTGAAAACACAGATCCGGGTGTTGCCTTGAATAATTAAATCTCTAATAAAAAATTAGAGTAAGTTTTTAAGAGAAATCAGAAGTGCTAAACATGATATGAAATATCCAGACCTGTGAATGCTGACAACCAATTCAAATTTTGGTAATAATGAGG-AGGCTCAAAGAATCTGCATGCAAGACAACTCTGGACCTCTCACCTAATCTCATCATCTGGCCCCATACTGCTACTTTCTCCATCAGCCTTAATGG--ACATTTCTCAGATCCTCATGA-CACAAAGTTTTTAACCTTAGGCCTCTCACACCTGCAGCTGCGCTCTGCTTGGatcccttctcctctctccaaCACTAATTAAA--GACTTTCT---------------AGACCACTTTCCA----AATGAAGCCTTCCCTAGTCTCACTGCTGTCTAC-TCCACAGCATCCGCT----AGTCACTCCATTAAATGTTCTGACCAC---GAGTACAACCTTCTAACACTCATTTATACATAAAACCAAAATCACTTA-TCTAATATTCACTA-CCCGCTTATACAGGACCTTCTTAAAAATAGGATTCGACAAAAAATGGTCAGCAGGGCTGGGGCTACTGCTCAGCGGCACaggcgcctgtctggcaagcgtgaggtcatgagtttgatccctggtaccaaaacacaaAAGGATATGAAATACATATTTGCTGCTAACCAGTGGTCTGACTGTAAAATGTTTCTTTAGACAACAAAACTCTGGAatact-tttgaaatattaatCAAACTGTACCCAGTGTTTCAGAAACATACACTATTTAACACAAACTCAGAATTAAAATATTCCATCACAATACTAGTACTAAACACGT-----TTACGGATAATTGACTAAATCCTAGAAACTGTATTAAG--------TGTTACATCTCATTCAGTACAACCTGTAAAATAGGTATCAACGTCATACAGAGGaaacag-------aagttttaaatttgcTCAAAGCACACCTCTGATCAGCAGCAAACCAC-AGTTTAAATATATGTA-------------------------ACTGAGATCTTACAT--AC----CATTAATAAAGATCCATTATTAAAACCAATCTGATTTGTAGCTTTTAATTGAT-GTTATAAGAACTAACAAGTTATCTTCCATCCCTCATCCTGCTATACCAGTGATGGAGAATCTCttacagctttcaatgatacaaacagcctgctgtgacaCATGTGCCGTAGATGCACCACCACTACTCTACCCTATAATCCTTCCATATGTGTAGGAAATTCGGGTAAATTATCAGTATGTGTcttctaaattaagaaaaaaactttaTCCATGTACAAAACAGATATGGTCTTAGTAACTGTCaatattatatttatgtattatacATTAATTTGATGTTTTGCATTT--------CCACATTTTAATCTTAATTTAATGGTCTGATTTTAAATTgatttccttttccaaagtaaAAGAATTTTACTATAGGGACCATAATCACTATAGGGACCATAATTTCAAGT--AAGTAagccagaaaaaagtaaaaaattaaaccaatatAA----------CCACAGGAATACAGAG----------ATTCTTCACTAATTCAACT------ATTGGAATTCTCCCTTTCCAAAACTCAGAAGCCAGAGATTCCAGTGAATTTTCACA-TGCACTATTTACCAACCATACTTTTGCTATCTAAAACTCAGAATGTGGCTGACTAATCACCCTCT-GTTATCAGAACTTTATAATCATCTTCTTTCTTCAAAGTCTGACCTCAGGAGTCTGGAATAGcaagaaa-acacacacatt------------------tatgtTCATGGgccatataaatttaagaattctTCTTTACATTATTTATGTTGACTTCttttacactg---aaaaaaatgcaaagatctacattttcattcaaattttagattttaaatgc----atttgagaatttttct-----------atataaatgtCTTTAATCTAGAAAttggtcattttttatctttttagactATGGAAAATATAAAGGAACCCATCCATTTAGTATATGACCATTTCCtacaat-----aataatattaatgCATAGCTGCTGCCAGAGTTCTGATGCCAGTTTTGAATAACATAGTTTTCCCAAATACTTATCATAGCTTatataaatg----aggaaataaagtttcaagaaaaattactttGTTAATTTTAGTTACATTTCACAGATCATATCAGATTCTTTTGGAAGTCACATTAAGCAACAAAA---TTAA---------tctaaaagta-------------------------caaaatataaagaaa----------------cattaGAACTACTTC-ATAACGTTTAACAAAAGTCAAGGAAATGTCAATCAAGTAAT

a score=53657
s chr3           100684330 1385 + 160039680 GTCCACAGCAG--AAGAGTCTGACTGAACACTTCGTTCTGCCGGGAAAAACCAAGGA-----------------ACCCTAGGAGTCCTTCCAGTCTATGTATGGTTCTACCCAGGCAGCTCTGAACCAACAACGTTCAACAC-----CCTGATCATTCACAGGGGCAGGAGGGGGAGGGGGGAGAGACAAGAAAGCAGTGAACTGTACCTTGCTCTCCCAAAAGGAAGTACCATAATTTAAGTAACAAACGAACCTGTGTCTGTGTTCGTCGGGTCCATGGATCAGGAAGACGCCGGGGTTTTTAGCTCCTTTGCCGGCATCTACGTGAGGAATTAACACATCTTCTAAGCCCAGATCAAAGCGTTTGTGTTTTGAAGAGTCTGGAAGGAAGAAGAATGCCCCAAAACACAGGGTGATGAAGGCACTAAGGATGAGGAGAAGGATAAACTTCTCGGAGAGTCTCAAGGTAGCCCTGTGATGTGGGAAGGAGGGCGGCCCCAGGTTCAAAGGTGGTATCCTACGACCAGAGAGGGGCAGCAGCGCTGGGGTAGTCATCGTTTAGGCTCTTGGACGGAATACTTTATAAAGTTCTCATCTTATATCAAACGTACAACACATCGAACCGTTTCTCAAAACCTCGGCCAAAAAAAAAAAAAGAATAAACTCAATTTCCCTCCTCTCAAAGGATTGTTGTGCttttttattattattattatttaCGAGGCCACCTCTTTCACGCTC-TCCGATTACATCCAGAAGCCCGGGTGACCTCCCAAGCGATCGTTGGTTTCTGTCCCGTCAGATCTTCTCGCCATTTGGCTCTCGGTGCCTCACCGGATGATCGCGAGTCTCCTCTTCATTCCCGAGAGTGGATCGGGCGAGCCA-CACCGCAGAGAAGCTG-CAAGGTGGGTTCTGCCATGCCCGCGCCCCGG-CGCGATGCTCAGAGGCGGCTGCCCGCCCCGGGAGGCGCCCGGCGAAGACGACGAGTTGCAGTAGGTCGGTTCCACTCGGTCCCCTCCGGAGCCTCCTCCGCTCCACCGCTCCGCAGCCTCCGCGG--------------CT---------------------------------------------TCCAAGCAGCGGCGCCGGGCGTAGCAGCGACGA----CCCTCAGCCGAGGC----------------------------------------------------------------CGCG-AGGGCGACGGCGTCCCGAACACTACAGCGCCCGCGCCGCCG-----------CGCGCTCTGTCA-GGAGCGGAACTTCCTCCT-------CAGCCGA-----------------GCGGCCGCCCCCACCCGGctcctcctccttcttctcttcctcctcctcctcctcctcctcctcctcctcAGCTAGCCCCGCCGCCCGCTTCTCGGCCGAGCCCAGCCGCGGCGGCCGAGCCCCTGCGCCTCGGTGGCGGCGTGCGAGGTAGCCGGGCCGCGGCCCTCAGACCGACAGCCCGGGGCCGGCGCCGGCTCATTCCTCGCACCGCCTGGGAGAG
s HiC_scaffold_1 110656132 1499 - 233722169 GTCCACGTCAGCCATAACTCTGAACACACGTTTCTTTATG-----AAAAACGAAGCACCTGGATTTCAGGTGAGACTCCAGTAATCCTTTCATTCCATA----GTTCTACTCAGCCAGTTTTGAACTAAAACAACTCAGGATTATTACACGTTTAACtactagagaaaaaaagcagagacagagacagattagATCTAATAACCCTACCTTGCTCTGCTACATGTTAACACtagaatttctaaaataaacaaaCCTGTGTCTGTGTTCATCAGGTCCATGGATCAGGAAGACGCCAGGGTTCTTTGCCCCTTTGCCTGCATCTACATGAGGAATCAACACATCCTCTAAACCCAGATCAAAGCGTTTGTGTTTTGAAGAGTCTGGAAGGAAAAAGAATGCCCCAAAACACAGGGTGATGAAGGCACTAAGAATAAGGAGAAGGATGAACTTCTCAGACAGTCTCAAGGTAGCCCTGTGATGTGGGAAGGCAGGTGGCCCCAGGTTCAGAGGCGGTATCCTGCGTCCAGACAggggcagcagggctggggtAGTCATCGTTTAGGCTCTTGCTCAGAACACTTCATAAAGTTCTCATCTTGTATCAAATGTACAACACACTGAACGGTTT-TCAAAATCTTGGC--------AAAAGTGGCTAAACTCTGTATTTCTCCTCTCAAAGGACTGTTGTGCTTT----------------TTTCAGAGAGCACCTCTTTCGCTCTCGTCCAATTACACGCAAAAACCCGAGTGGCCTCCTTAACGATCGCTAATTTATGTCGTGTGGCATCTTCCTACCATTTGGCTTTCAGTACTTCGTCAGGTTATTGTAAGTCTCCTGCTCATTCCTAGGAGTACAGCCGGCAAGCCACCACTGCAGAAAAGCTACCAAGGGGGGGTCTTCCAT-TCTGCACCTCAGTTAAGATGCTCAAAA---------------CGGAGG---TTGGCG-AGATGG-GAGTTGTACAAAG-----CTCACTTCGTCTCCTTC--CGTCGCCTCTATTCCGCAGTATCTGAGCCTCTGTGGGAAAACATGAAGGTCTCCCTAGAAGTCTGAAGCAGGGACGGTCTCCCTCCTCGCCGGGAAGCCCAAGCAGCAGCGCCCGGGGAAGGAGCAAGAAGAAGCCGTCGGCCGCCGCGCTTCCCGACACCGCCCAGGGGGCTCCGGGCTCCACCAGGGATCCGGTGCTGCCGACCGGCAGACGCGAAAGGCGGCCGCGTCCCAAATACCTGAGCCTCGGAGCCGCCGGCCGCCACCACCAGGCTTAGTCAGGGAGCGGAACTTCCTCCTCCAGCGGCCGCCGAGTGCGGGGGAGGGAACGGCGGCCGCCCCCGcccggctcctcctcctcctcctcgtcctcgtcCT-------CGCCGCGGCGGGCTCAACAAGCCCGGGCGTCCGCTCCGCCAGCGAGGCC-GCCGCTGC--CCGCGCC---GCGCCTCCGCGGCGG---GGGAGGAAGTCGGGCCGCGGCTCTGGGTCCCGGAGCCCGGGGCAGGCGCTCACTCATTCCTCGCTCCGCCCCGGGAGG

a score=29566
s chr3           100687207 1395 + 160039680 AAATGTGACATTGGAAGTTCCAGACTTATAGCTGATGAAGA------------GTCTTCTGTATGCCTTGTCCTCTTTCTT--GTCCTTGCCTATTTT---------------TCTCTGAGAGATTAAAG-------TGTTAATTTTACAGATTTTTGTAGATACTCA------------------------AATACAGCCAACTATTTTGTCACACTCCTACACTAGCCTCCAAACCATTACCAATTCTTGctccctcccccttttgcctcctcccctctctacctctccaactctccctctgtcttcttcccctgactcccctttccattttctttcacttctAAAAAGAAG-----GTGTTAAAAGAAT-----GTTTTTTAAAAA--ACAAGCTGCAAATGTATTCATTATGGTTACAAGTATATAAGAATATGCATATAAATACAGTAAAGGGAAATATTTAGAAAAGATTATAACT-CTTAAGACATTGGTATTATATATAATTTTCCCCATGTGTTCTGTTTGCATTGCatttataattaattaaattaaaaatttataaaGAA--TGGTACTTGAGAAAGTGAAGGTCAAATTT-CAGGAGGTGGATCCAGTCAGACCAGGTTGAACACA--GACTGATCCCTCCATGTGAGGGCAATCCACAGAAAGCAGAGAAGGTGAACTGGGGTGGGGGTAGGGGGTAAGTATTCAACAAAGAGGAATTTCATTTCAGA---TGCCTAAAGAGAAT-ATTTCATTTTCAAAGCTTAGTTAGGCTTTGATCAAAGATGTAGACAAGGTTCCAAAGTGGCAGATAAAACAGTAATTTCCCTTTTACAAATCTATTTAAGTTAATTCATATTTTACGAGATCAGAATTATTAAATG-TTAACAAAATAAAATGTATCCTTCCAGGTTTCAAACTGATAGGACCATTCCCGGGATCCACTCAAGCACTGCAATATCAGAGCTCCTCGTGTGTATTAACTTCATATTGACTCTTCGTTGTTTACAGAACAAAACAA----AACAGTTTTGACCTTGATCCAGGC-TTCCTAGATGAAGTATCATCACCTAGCCCGATTTTAAGCAAAACTCAGGG---AT----GGGGAGAAGCAGGGGGTAATGCAAAAAGACAAGCTGGGTTCTTATTTACTTACAGAACCTGTTCCTTCAGCATTTCAACTGGTTTCCAAGGTTTCCAAGAAAGATGTCAGCTGAGAAGTTACCAGGTGTTCCGAGAGTGAATGCCTAGAGAAATAACTAGGCTCCCGCCTTGCTCCTTCCACTCCTATTTGCATCTAGAAAGCATTTTCCTCGAAGATCAGGGATAATTTGTAGTTCGAAGCTATGAAATTTTTAGGTTAGTTGCATGAAAGTTAGCAAGCCCAAATAAGCCTAGGTAGATACTCTGGGCCTAAGGATGTACAGCTTGCTTGCTTCCTTATAGAAGATGAATTTGTTGAACTACTACTG
s HiC_scaffold_1 110659842 1267 - 233722169 AAATGTGACATCTGCAGTTT-ACTCTCATAGCTGGTGGAGAAatctatattttgtcttttttttttttttttttttttttttagcctttgCCTGTTttacaaaattcatttttccttcagGAGAGTAAAAGCATCATCATTTAAATTAAAGATCATTGCAGATATGCAGTCTGAAGTTCTAAAGTCATTGATAATGTCACCACTTATTTTATTATACTCTTACACCAGCATCAAAAC-------ATTTCTTGCACAT----------------------------------------------------------------------------------ATTTGTAGACAAAAGTCTAAATTTTTTAAGAATTGGCAgtgttttaaaaacagcaagtTGCAAATTTAGTAATTATGATTACAAAAATA-----------------GCCTAGTAAAagga--tatttgaaaacaattataaCTGCTAAAGATGTtggtattttatagaattttctaaatgtgTTCTATTTGTATt------ataattaaatacatgaaaaatgtacaAAGGGGCTGGTACTTTCAAAAGTAAAGGTCAGATTTTCAATAGGTGGATTTAGTCATATCAAGGTGAGCTCAAAGACTGGTCCATC----TGATGACAATCCCcagcaaaaaaagagagagagagagtgtgtgtgta----------atATAATACAG-GAAAATTCATTCCACAGAGTCTATAATgagaattatttcattttcaaagtgTAATGAGGCTTTGATCAAAGGTACAGACAGGATCCCAAAGTGACAGATAAAGTGGTGATTTCCCTTTTACAAATCCATACAAATTA----ATATATTAGGAGATTTGAGTTATTAAatgattaatgaaataaaacttgCTCCTACAGATTTCAGATTTATAGGTCCACTCCAGAGATCCACTCATGTATTACAACATAAAAGTTGTGTGCTTGT-CTAATTATAT-TTGACTTTTCCTTCATT-------AATACAATGTCAACACCTATTACCC--ACccatacaaacacaaatgcacacacatta-CTAACACTGCTGTAGATGAAACTGAAGTTGCATACTAGGGGAGAAACATATGGTG-------------------------------TTACATAATCTATTTCATCATAGCTTTAGTTGATCCCCGAGGTATCCATGGAAGATGTTAGGGGAGAAATAACCACA------------GAATATACAGAGAAATGTCCAG------ACCCTACTCCTTCCACTCTT-----------------GTTTTCCTCCAAGTTCAGAGATAA-AAGCAGCTGAAAGCCATGAAATCAAAGAGTTAGCTGCATAAAAGTCAGCAAAGTCA---AAGCTTACATGGCCTCATAGAGGCCAAGTA-------CTTGTTCATTTGTTggtaaaaaatgtgtttattgaatGACTACTG

a score=27008
s chr3           100690692 2283 + 160039680 TGCACCAGGGACATAAGCAGGGTGGACCAAAGAGAACAGCTATCTCCTTAGGCAGCCAGGGAGAGAAGATGTAAG-TTGAATGGTCTGTACAGAACTGACAACAAAGATCTATTGAATTCAGCAACCTCTCCAGGCACCTTCAAAATGGGATGCTCATATCCATATTTATAAAGAGGAATCTGATGCCAAAAGAGGTCAAACAGTCTTTATAAATCCATATGTTAAAGTTACTTCAAGTCTACTCTGGGCAGCTAGCTTGAGAATATATTTTGTTGATTTATGTATT--CTGGT--GCTATTA------------------------------CTGTGTTGTAAGGAATCAAAGATGACTAAAATATGCGAGGTAGCCTACATATAACA-AACGAATGT-AGCTCTGGTGCTGGGAAAACTCAGGTTTAATGTGGTATTCACCATTTACCTGT-TATTTTTTGAATATGTTCCCTGCCCTTAATTTTTTTTCA--TCTGCAATATTAAAAATGAGAAGCCTCATTTAAAACTTGCAAACCTCATGGAGTTGTCCCGAAGATTAA-ATAGATAA-GTGTGGTGCTTCCTGTGTGGGTGGGA--TGCTGTACACTAAGGAGTATTGTATCCTGGGCATCGAGATGATTAGGAGTTGTCGGGACAAATGAAATGGGGAAAGCCTTGGAGGA----TGTCACGTGGAGAAAG-----AGGAGTTTCTATGAAGTACCACTTGAGGCTTTCACG----------CTGCTCTTTGCTCTCTGATTTCCTGGACAGGCAAGTACATGTACTGTACA-------------TCATCAGCCTGTGGTTCCTGAC----TGGCGCTAATCTAGCTGCACGGCCTCACTCAGTTACTAAGGATTCGTTCAC-ATTTCCCTGTCCTGGCCCCTGACCTACACAGGCAATCATCTCAGATAAGCATGTCTGCCTTGCAGATC----CTTTCTCTTTGGTGGCTT-CTCTGAGGCTAGAATTAGTAGAGGTCAAGGGCCGTCAGAGACCATTAACAAGTCCTTCTGGGTTATGGATCTAGAAACTAGTGGTTTCTTAGTTTATATGTATTAATGGTGAGGTTTTTTTTTGGTTTGGTTTGGttttttttttttttttttttttttttttttttttttGCTTGTTTGTTTTGTTTAAGTCTCCACTTGACCATCTTCTACAGCTTATGTCATGTCATCCTAACTTGGCGTTTCAGAG--GGGTGTGAAATTTGTTGACCATGTGGAAA--------GTTCTTATCTCGAGAGCTGAGCCTCTAATGGAAGAACAAGGGAAGAGAGCGAG----------GCtcaagttggtgcagcaaggtcatgttttaaccattccttttcctacacgaaaatagcaatgaaagTGGTGGGAGTTTTAggattccatttacatcacccacatgactgttccagggggatccagtgccctcctctggcttctgtgggcactacatgcccaaggtgcacatacatgcattcagccagaacacccatacacttaaaataaaaataaaGACAAACCCCTTCCCCACCCCACCCCACAAACTTAAAAAAAAAAAAAATgccgggcttggtggcacacacctttaatcccagcacttgggaggcagaggcaggcgaatttctgagttcaagactggtctacagagtgagttccaggacagccagggctacatagagaaaccctttcttgaaaagaaaagaAAAAAATTAATGATGGCTAAATATAGAAAGAGGAAACTAAAAGGACATAATCAGGCTTAGAGACAAAACAAACCGATTTGTGAACCAGAAATGGAACTGAAACCGAAAGCACTTGGCAGTCTACAGCCAGAAGCCCGCTGGACGTCTAGACCCCAACgccgcgatttctgtctcctgtagagtggcaggaaaaaaaaaaaaaaacagacttcaaacaaagtaaagaggacaggagccag-ccgggagtgtg------tgagccaatgagcggagtctgtaaatagc-gctgccatccctg----ccagggaagcaggaggacaaagcct-gccctgggaccaggaaccaagccacactgctggctctatgctgtccccagcatcacggtggatgaagtggaaacatcaaaacactaacattagacctgatcctagaaccgaaggctag-gaggcaagaggaggcaacattactaagtttggagaggtaagcatag--caggagagg-------------gaaaaagtatgctaacacaaaccagaaaaaagcaaatagaaataccctcttaaaagggagtgtaacagttaggttctaaatgcacgaaaatatctaacactgagaaaTAATATTAGgggtggactggaaggggaataaaatctggagct
s HiC_scaffold_1 110662278 1907 - 233722169 TGCCCAAGATGCATCAGCAGTGTGGACAATAGAGGATAGCTGTCTCCTTCGGTAGCCAgggaaagaaaatctaaaattgaaaacaatagaCAAAACT--------AGGTGTATTGAGCCTAGC------TACAGACCCCTTCAAGACTGGATATTCATACCCAGCTTT-TAAAGAGGAATATGATGCCAAAAGAGGCTAAACATTCTTTATAAATCCTGATATTAAAGTTGTTTTAAATCCACTCTGGGCAGCAAGCTTGAGAATATGTTtcattgatttatatatttacttgttAACTATTATTGAGCACCCACTCTCTGCCAAGTATTAATCTGTGTTCt-aggcatcagagatgaat-aaataTAAGAGGCAG--TGCATATGATATAAAGAGCACGGGCTATAGAGCTGAAGAAATTTGAGGCTAAATTTGCATCCACCATTTACTCATGTGTTCTTGGAA----------GCACTGAAACTCTTTCCAATCCTGC----TT------------CTTTATTGATAAAATTAATACCTCTTACTATTGT---GAGGATTAAGGGAGATAATGTATAGTGCTTCTCCCATGGTTGGGATTTACTAAATATTAACCATCATTTTACTACAGGCATC-AGATGAGCAGGCATTTCCAGGAGAAAAGAGGTGGGAAGAGACTTTGAGAAGACTTGGCAGAAGGAGAAAGTCCACAGCATTTGTTAGGGGAACCAGCCTTAGG-TTTCATGGGAATCTCAACTACTTCTGGGATTCTTATACCATCACTCAGCATACTCAGGGATTGTTTGACTATTGCTATGTTCATTAACCTGAAGTTCTTGACTATGTGTGGCTAATCTGGggagttaaaaaaacaaatttactgAGGATTCAATCTCAATTTCCATTTCC--ACCCTAAACTTGGATAGGC-CTGATCTTGGGGAAACATTTTTGCTCTGTAGATCAGTGTTCCCTTTTTGATGGCCTACTCTGCACCTAGATTCTGTGGGGACTGAGAGTTAATAGAGAGCATTTCTAACCACTT-TAGGTTATAGAGCAAGAGA-----GTTTTCTTAGTTTGCCCATAATAA-----------------AGTTCACTtaagtttgtatttt--------------------------------------------------catttgactGTCTTCTATGTCTT-----ATGCCACTCAAACTTGGTGACTGGGGGAAGAACATGCAGTTCACTGACCCTCTGGAAACTTAAAGTGCTCTTATAGCTAGAACATGAATTACAAAGGAAGGATGGGGAGGGATATACAGAAGGATTTCTGCTCAATGTTGTGCAGTAAGGTCATATTTTATCTACTCCCTTTCCTCCAACCAAGT-----TAACAGTGGTG-------------------------------------------GGGGGA---AGTG----------------GTGGG--------------------------------------------------------------GAGAATgacaaaaccc--------------------------aaaaaataagAAGGC-----------------------------------------------------------------TCAAAAGCGGT---------------------------------------AAATATTTTCTTAGA-------------------------------CCAGAAATGGGAC---------------------------------------------TGAAACAGAA-----------------AGCACTTAGTGGGCCA-AAACACAAGTTCACTGGAGTCTCAAGTTCAAGAACCAAGATTTTTGTTTCCCACAAGGT--------AATAGAGACTAAAGATATTTCAAATAAAG-GTAGAGGATAGATGCCAGACTTGGTGCTTGAAGCCAGGAGCTCATGAAAGGAGGCTGAAAATAactgcccccacccccactgccTAAGAAAGCACAAGAACAAAGACTCAGCCTTGGAACAGGAACCAAGCCAAGCATTTGG-------------CCACCATCCCTGTGG----GGTTGGCGCATCACAATGTCAACATTAGATCTGATTGTAGGAAGGAGGTTTGGAGAAGTGGATGGAGATAAAATCACTAACCATGGATAGGTGAACACAGACTAagtgaggaaagaaaataaatgaataaatgagctaaaggaaacagaaaaaaggcaaaTAGATACTTCCACTGAAAA-TGAGCTTGCCCACCAAGTtccaaacacataaaaatatctaATACTAACATGTCCAAGTAAATGAGGACTCAGAATAAAACTAACCATGAAACT

a score=22885
s chr3           100697625 620 + 160039680 GGGCTTAGGGTTAGTCCCCAACACCACAAGAAAGGAAAAGATAAAAGCAAATCAAACTTGCCCAGTTGAACCATGAATTCTCAGG---CACACATTTCATGGTGCATAAATCCCCTTCTTTTTACTGGTTGCTATTAATTACCTTAAACTAATGTTTGCATTTACAACTGGCAATTATTCTGCAGAGAACAATGGTTTTGTGGTGATTGGGATGGGAAGGGGGGTGGGGCTGAGCATGTGTTGTACATCCGAACTGAGGTATAAAATGCTGGACATTA-GGAGCTATTATTCCAGAGGCATTTAACTTGGCAGCTTCAAGCATGAAAGGGGCTTAAAGGATTTACAGATTTCCAATTATGAGTTGTAAGGTTTTGTATTTACGTTATAGTAATTCCCAAATGCAAATGAGGTGTAGATTTTTAACGGCCCAAACGTGCTGTGCAATTTCAGCCTAATGTAAGTAAAAAAATGTGAACAAAGTTTGAGCCTGTAAT---------GACTGCCCAAAGAGGCATGAGGCCTTCTGGAATCACTGAAGGAAATGTTCTTGGGAGTCTGAGACTGGAAAGTTTCTGGGTGGTAAAGGAGTCATAATGAA--GTTGTGACTCTAGGGCTATTATTTATTA
s HiC_scaffold_1 110668128 589 - 233722169 GGCCCTAAATTCAATTTTCAacacca---------aaaagacaaaa--------aaatcgc----TTTACTCATGAATTCTTAATATTCATAAATTTCACACTCTATatattcctttccctttccttgt--------aTTACTTCAAACTAACGTTTGACTTTGCAATGTATGGTTATCCTTCAGAGAACAATGATCTTGTAGTGACAGGGACTGGGAGTG---------TGGGTACATATTGTACAACCAAACTGAAGTATAAA-TGTGGGAAATTAAGGAGCTATTATTCCCAAGGCATTTTACTTAGTAGCTTCAAGCATGAAAAAGGCTTAAAGGATTCATAGATTTCCAAAtatgaattttcagtttttatatttactttgtgGCAGTTCCAAAATACAAAtgagatacaga-ttttaaagttTCAAGTTTTCTGTGCAGTGTCAGCCTAATACA--TTACAAAATCTGGATAAAGTTTGAGCTTCTAATCCAGGGCTAGACTGCTCAAACAGGCACAAAACCTT-TGGAACTGCTATATGTAATTTGCTTGGGAGTCTGCAAATTAGACATTTCCTGGTAGTAACAAAGCAATAGTGAGATGCTGTGATTCTTG---TATTGTCTCTTA

a score=130975
s chr3           100702537 6066 + 160039680 [encoded data, 6348 characters]
s HiC_scaffold_1 110670666 5456 - 233722169 [encoded data, 6348 characters]

a score=39723
s chr3           100708714 2135 + 160039680 TTTGTTTTGTGAGGTGTCTCTGATAGGGTTCAAGTGTAAGTTCACCCTCTTGGCTTCTTTTGTTTTGCCGTG----TGTGTCTTTTGCTCCTA-----------------TTTTTAAATGTGttttt--------------aataataataattttaaaa-------------------CTCTGACTTCCCATTTTATTTCTGTTTCATTTCAGAGGGTCACAAACTGTATTCCCCACACTTGCATATCCATGAATTTAAATCAGGATTTGGGC-TATATGACATAACAGACG-CTATCTATGATATCCAGACACtgacattaaat----------tacacaatgaaagtgatttcccttcctaaatctctcccagtcctgcctatcttttcaaggagaaactttccatttggt-cttgtgcacctatcacttgccaatcttccctttgaaaagagagcaggccccaggctgaaagcctttgacatgtgtaattgtatctagctaggattgtataacattgttttggtttttattacataagtgcttgtttttattgttacctcctacttacggcaagtgatattggttttctttttatagtcctaatataatgtttcttcttttaaaaggcacatgtaaatttaaaacatgcaccaatttaaaggaaaatattaaacaaaAGGGTAGAGAAAGATGTTCAAAGTATCATTGCTGGAGCGATGGAAGTTTGA--------AAACTGGAATCACTTTGTCAACTTTTGCtgtgtgtgtgtgtgtgtgtgtatgAGAGAGAATTATATGTTATTGTTAATGTAAATTTGTTAGTAACATCCATACCTAGAGAAAAGCCACTCCATTTATGATTCCTCCAATTGAAATTATACATAAACTCTTTCATGGTCACTTCTAATGCCTTCTAGCTATAGGGTTTTGACAGCCTTTTCTTCAAATATATACCGATAACTAtgtccttaattggctttctattgccataacaaacaacaagaccaacagtaatttggagagaaggtttactttctcttccaccttatagtccatagtggggggactgaagcctagagggtggaggatgcttactgccttgctcaacttgctttcttacacaacctaggacctcctgccagggatggaactgcccacagtgggctgggccctcccacctgcatctggattcatctcaagaaaacgcccccacagattgccctacgggctagtcctatataagtgttttctcaggcaagggtccttcttcccaaaagactcttacatggtatcaggttgacaaaaatcttcccaggacCAATGACTAATCTTGCAACAGCGATTCTGGGAGATGGTATTCTGTCTAGTAATCTGGCTTAATTCTACATCTATTTTTAACACACACACAGTTACCATTATCATTATTATGAAGACGTATATAGGCTAGGAGCTATCAAGACTTTGACCCTTATTTATTATGAATTATTCAGAATGATCTCATTAATCCCAAGTAATGAG----CTCTTTGCACACCTCTCCCTGCAGGGAAAGGGTGATATGCTGCAATGCTTTATGCTG--CTTCCCCCAGAAGCCTCT---TCCCATTCTCATCAAGGGGGCATTTATCTCAGAGAATCACATTCTCCTTGACCCCTTTTCACTGAGCAATACAACTCTCTACGACTTGAAAGTCTATTCTCCTGGATGCAGTTGGGATATCCTCCGAGGTAGTTAGTTGCATTGGCTCCTTCCCAGCCCTGTCTTCCATAGATGTCAGTCTGTGGCGTTATGGGAAGTTGATATCCAGATTTCTGTGGTTGATACCCAATGGTCCATAGCATAGAGATAAGTCGTAAGGTAGACC-GAGCAGGTTCTTATGCACGCAGCTTCTCTTTGTGCCCATATTCTCCTTGCAAACACAAC-CTGCTGCCATGCACAGCCACCTCTTCCATTCTCTCAGAAGCAGGAA------------------------AATGGTTAACCCCTTACACTA-------GAACAGCAAGATGCATCCAGTTCTTATGAAAAACTGT--GTCAGGAGGGAGAGATAGAAAGG----TAATACCTGCTTGCAATCCACTTTCCTGCACTGTTTGAACACCATAGC-CTCCTTGTTCCCTTTCC--CTGTCTCTGATATTTTCAACTCTCTGGATGCCTCAAGCCTACTATTCACAGGAGCAGGTTGCACCTTGGGCTCCATTGCTGTATTGGATTCT
s HiC_scaffold_1 110677006 1859 - 233722169 tttcttttgtgagcTGTTTTTACT----TCCAAGCACAAATTCAT----TTCgtttttaaagttttgctttgcACTTGTGTCTTTAGCTCCTACtttgtttcaatttctttttttaaatttttttttgtttcaatttcttaattcataatgtttttaaactttttaagctACCTTCTCTCTCTGATTTCCTGTGTTATTTCTCCTTAAGTCAAAAATATCAAGAATTGT--TTCTCACA-GTACACAGCTCTCAAT---------GATTTGGatataagtgacacaggagaTGATTATCAGTGGTACCAAGACACTGATATTAAATGGTATTGAATCATATAGTGAAagaatttttcctttccaattttctCACAGTCCTAACCATTACTCCAAG-------TTCCCATTTGATTCTTATAAATCTATTACTTGCCAATCTCTCTTTTAAACAGAAAGCAAGC-------TGAGAGCCCTTGGCATGTGTAATACTATCTAGCTAGGGTTTAATAATGTTGTCTTGGCTTTTATTACATAagtacttatttttattgttacacCTTATTTAGAACAAGTgatattggttttctttttacagtTACGATATAAAGttccttctttaaaaaagtagatgtaattttaaaatgcacatcaatttaaagaaaaatattaagcacATGATAATGAAAAGATTTTGGGAGCAGTAGCACTAGAATGATGAAAGTTTGAGACACATCAATCTAGAATCATTCCATcagctttttctacttttttttttcatagtgtgc--------------tgttatttttaaagtatatttgtgAATAGCATCTAGACATAGGGA----CAGTTTCACTTCCAATTTCTCCAACTGAAATTATGCACTGATTATTTCATGGTGTCTTTTTATTCTGGTCAGTCATAGAATTTTGACAACCCTCTCCTC--CTAGTCACTGACAACCAT---------------------------------AAATATTCCAGCAGGCGTTCTGAGACAAGG--------------------------------------------------------------------------------------------------------------------------ATTGTATGCAGTGGACT---------------------GATTTAACTCA----------------------TCTATG------------------------------------------------------------------CAGGGTG-CAAAATTCT---------------------------------------------------------------------------ATACCTATTTTTCAACCCCCTTCCCTTGCC-CCAGCtatatgacaaagaaacaaacaggctGTGGGGCATCAAAACTATCATATTTGTTAGTTAGGAATTATTCAAAATGATC-CATTAATCCTAAACAATGCAATCTCTCTCTGT-CAATTTTCCCTAAAGGAAAATGG-GTCATGCAGCTCTTCTTTATGCTGTATTTCTCCCAAAATCTACTCAGTCCGATTcacaaaaaggaaacatttattttaggaaattGCTTTCCTTCAACCTCTTTTCCACTCAACAATGGAATGCTCTAAAATATCTAAGTTTATTCTTTAAGAATCAGTTGGGACTTCCTTGAGAGTGGATACAT---TTGGTTCCCTCCCATTCTTGTTTTCTGTAGGCTTCAGTCTGGAGGAGTGGGTGAGGAGAACATTCAGATTTCTGTGTCAACCAACCTGCTCCCCACAGGATGGAGGAAGCACTTTGAATGAACCAGAGCAGGCTCTGATCTACGCAGTTTTCCCTTGATCCTACCTTCTCACGTCAAGGACATCGCCTCTGCCCACTACAAccatctcttcccttccttcagaAAACTGAAGCCTATTACAGTGCTAAAGTAGGCAAGAGCAAACTCTCTGGGCTAACATCACGAAAATCCTGATCTATCCAATTCTTGTGGAAGGAGGTAAGTCAAGCGTAGGTCATGGCAAGAGAACCAATACTTTTGTGAGATCCACTCTCTTGCCTTGCTTGAACACCAAATCTCTCCTTGCTCTTTCATCAGCTCCCTCCTACATCCTCAAGTCTCTACGTGCctaaaaaatgttact-ataagaCCAATTCAGATCTTGGGTCACGTCTTCATATCTGACTCT

a score=18286
s chr3           100711379 879 + 160039680 CTACCTCACTGTGACTCTGGATCACTCTGGGAACACTATGTGCAGGTTTTCTGCTTGTGCACAGGCCATATGCAGGTAGTGTCCCCCTCTCCGCTGCCCACTGGGAGACAGTCTTGCTCAGTAGTTTTATAAGTGCCTTTCCCCAGGTTGGTTTCTGGGCTCACTGACCCC-GAGGCTAGCAAGAGACCATCCCCAGCCCTTCTGAGGAGACCGGGGGCTGAAGTTAGGTCTCTGCCTTCTCTCAGTTTAATGGCTGTCCCAGTTTGTCCCGCTGGCTCCTCTGTGGTTTGGATAGGCATTTCCTGCAGCTTGCACCTAATCTTAGCAGCTGGATGCAATTAGGAGCCTGCTCTTGGGCTGGCAGCTGGAGCATTGATTGATGTGCTTTGCCCAGTAACTGCTCCTTCCCAGGAAGCTGGCTCCATGCTTTCTTCTCAAC------CCATGACAGGGTCCTCTCCAGCTTGAAACGTAAGC-CTTCTCTTCTC------------TGGCTTAACAATCCTATGTGTAGCCCTATAAATGATGCCACTCTGAA-----TGTGCAAACGTCCTCAAACACTTAGCCATTCTTACTGAAGGATATCACGTGCCTTGGA----ATACAACCTCAAATGTTAAATCTGTGTAAGTTCTCCACGCCCCTCCTTCAACTTCAT--AAGGAGATGAT-CCTGGAGCGTGCTGTCTGCGCCAATGTCTAGTACACAA--------CAGTGAGTGTGAGCTATTGTTGGGATTGGGTTTGAGCCTGTTGACATTTTGTTTCTGATAGCTGCCATTTTTTTTCCAGTGTCGG-AATCTTCCCTTGAC--ACTTTGGATGTCTTTGTACTAAGCCTGTGATGAAACCCTTGACGAATGTGCAAAGCTCTTGTCTGTGACCTCCAGGGTTTCCAC
s HiC_scaffold_1 110678857 862 - 233722169 CTGACTCTTTAGGATGCTGGATTACCTTGGCAATACTAATGAGGAGTTTTCTTCCTTATCACAG-TCATTTGGATACAGTTTTATCCCCTACACTGTCCTGAAGGGGATA-TTTTGATCAGCTACCTTATGGGCATCCTGCCCCACACTTTTTTCTTGGCGAGTTGATCCTTGAGACTGGTAAGAGGCCACTTATAGTACCT-TACGGAAAACTAAGGCTGAGGTCAGGCATTTGTCTT----------GGTGACTGTCCCAATTGGTCC-----------------------TAGGACTT--CTGCTTCCTGTATCTAGTCTCAGCAGTTGTAGGGGATCTGGAGCCTGTTCTTGGACTGCTGGTTGGAGCTTTGATTAATATGTTTTACCCAGTATTTTCTGATTGACAAAGAGCTTGATTCATGCGTTCTTCTCAGCCATCTTCCATCATAGA---TTCTGCAAGTCTATAAgtaagcttttcttttcttttttttcactcatTGCTTAACAATTGTACCTGTGTACCTACAACTGATAATACTCCCAAATGTTTGCTGGAGAGTTCTCAAACATGTAATTGTTCCCATTGAAG--TACCATCTGCCTTAGGATGTATATGACATCAAATGTCAAGCTTCTA-AATTGCTTGA----CCTCCTTTAATTtacttaaatgaaataatacttgTAAAGTGC--TCTATGCCAA-GCCTGACCCACAGTGAACAATCAGTAAATGCAAGCTATTATCAGGACTGTGTTGGGG-TTGTTTTTATCTCACTTCTGACAACTGCA----CTTTTGCGATGGCAGTGGTCTACCCTAGTCAGAGTGTAAATACCTCACTTCCAGAGCTGTGACAAGACACTGGAGGAACTTG----GCTCCTGCCTTTGGCCCATAATGTTTCCAC

a score=29974
s chr3           100717947 1669 + 160039680 gatagCTGGAAGGGAggggaaggagagggagaagtcgagggagagagaaagagaaagagagaCATGT--------TTTGGACACTAAGGCAGAAGCAGGCCCCTGATATTCAAGATATCAGAGCAGAAGAGGCAGAGATGTGTCAGCATTGCTACATCATTAAGCAT-----CAAGGTTGCTTTTCTAATATGTTTGCAGTCAGCATAATATATGGTAATGAAAGTGTCTCAGATCAATGGAAAGAGATGAATTATGCAATAAACAGTGTAGGGAAAATTGGCTGGCAAGTTGATAAAAAGAGGGGGCACCCCTTCTCATTCTACACACACCCAAGAAATCCCAGAAACAAGTGATGAATTCCAAAACCGTTGAAAATATAACAAAGTTAGAAAA--------------GTTGGTAAAACCTCTATGTTTACA------CATGCGTATGTCCAcatagatatacagaaa-----------tgtatttatttccttatctatatatgtttattgaaatctgtgagtttacaccgatagtcccaacatcaattcaataccacactgctctagcatttcttccttagtttatttctctcttctac---------aacttagcttccatcacgttcagtggatttatctactggctcaGCT-CCTTCCATATAGTCAGTCTCCTATCCCCACTTCTGCCCCCTTCCCTCAAGACATTCTTCATCTCGACTGGGTTCtgagagttaatccccatgggcaccttgctggggtttagaatccctgtggaaacaaagctctgagtgcacctgtgaggggttgtctagattaggtcaattcaggtgagaagactaccggagatgtgggcagtgccgctccaatagctggggtcctggaccacataagaaggagctaagtaagtaccagtgttcatctctctctgcttcctgactgcacagtgggactgcacgctgtaccccaggctgtaaacccaggtacacctctccttcattaaggtcccttttcatatattctgttacagcaGTGGCAAGGTTCCAATGTCTCATACCATGGCACCCGCCTGAATACATGTGCGTCTTGCTTTGCTTCACATAAAGGATTTAGTACTGACGTACAAAAGGTCGAGGAAAGAGCGTGGGGAGAAGAGGAATGGGAAGAGGCGAGGAGGGAAGGGAGGATTCTCCCACTCTTGGTTGAACACGAGCCAGTGGATTCAATCTTTGCCGTGTAGACTCGACTCTACGGTAGTTCACAGCCC--CATAGTGTAACTGGACACGATCGGGGCTTTTTGT---TGTATTTTAGAACACATACCTAAGTCATCTGTTTTGAATAAAATACACTCTTGAGATGATGGACTGAATTGTCGGTGTGCTGCTCTCCCTGGTCTAAAATAGACAGTAAATACCATTACACGTTTATCTGATTCCTTCTCATTCAATTCCCATTTATCAAACACTCTCTGTGTGT-ATGCAGCCTGGG-AAGAACGAG---CTATTTCCAAAAGCATCAGTGCTCTCCAAGAGTTTACAATCTCACTAGGCAGTTTAAAAGGAG-----ACGTAGACTAATAGCATAAATAAAAATTAAACAGGTCAGTGGCACAT--GTGTGAGGCCAGGTCTGGTTCTCATGGAGCCAAGTGGGTAAACACAGTTCCACCAGTCTGGCTTATCTGGGGCTGGGGGATGAC--TATGCTCCTAGCTTTACAGAGCAGCCTG
s HiC_scaffold_1 110695308 1371 - 233722169 GATGTCTGGAATTCAGGAAGACAAACAGGATCAGTTGAG---------ATCAGGAAGTGTGGCATTTAAGATGCTTTTGTATACTTGGTTGGAAATAGGCCCTTGATGCCAAACATGTCAGCGCAGAGGAGACAGAGATGTGTCAGCAGTGCTCTGTCACTAATGATGTGATCAAGGTTGCTTTTCTAAGATGTTTGCAGTCAGCGTAATATATGGTAATGGAAGTATTTCAGATCAATGAGGAGAGataaattattcaataaatagtGTTGGGGAAATTGAC-----GATTGGCGCAAAAAATGTGGACCTA-CCTTGTGctgcacac-----aaaaat-----aaataaatgtaga-----------gcTGAAAATATAACAAAGTCAGAAAACTATTTAGTTCAGGGATAttataatgtatatgtatataactaTGCACATGTGTGTCAGCATAGGTATACATAAAACTTTTATACCTAAATTTATCTACATGTCTATGTGTATTTACTGAATTCCATGAGTTCACATTGACACT-------------------CATTCtgat------tttttccctttgcttctttctgttttctacaaGAGTGAGAAACCTGCCCCCATTATttctaatgtatttatttacttgatcAGTTCCCTTATATGTAGCCAGTCTTTCATTATAATTGCTCCCCACTTTCCCTAATAAAGCCTTTATTCTATTTGATTTCT----ATTA-----------TACCACACCGGGACACAGA-------------------------------TGTGAATGGGTGTCTAACTT------------------------------------GCTCTGCCCCATTAATGGTT------------------------------------------------------------------------TTGGGACTAC-----------------------------------CTTGTTCAttaa-----------------------aaggaagtgaaaagg-------------------------------------------------------------------------------------aagaacaagaaagaaaaacaaaataaagcaaagccaGGCAAGGCATG--GTAAAGGGAAGATTCTTCTGTTGTTTATTCAATATACATTAGTGGATTCTACCTTTACTGTTTAGGTC---CTCAAAGGTAATTTATAGCACTGTATGACATAACCGGGCTCAA---GGACTTTTTGTTGCTGTGCTTTAGAACATATAAGCAAGTTGTATTTTTTGAATGAGACACTATCTTGAAGACATCAACTTAATTATCAATGTGCTGCTCTCActggcctaaaataaa-aataaatac---tccaCA-TCACCAAAACGTACCATATATAATTGCCACTTATCAAACACTTTCTGTGTTTAATGCATTCTGGGAAAAAACGAGGGAGTATTTCCCAGAACATGACTGCCATTCAGGAGTTTACAATCTCACTGGGGAAATTAAACAGCGTCTTAAAGTAGATTAACaacacaaatcaaaaataaacagtTCAATAGAATACCAGCATGAGCTGGCACCAGATTCTCATGGAGCCAAGTGGATGAATACATTTCTGCAAACCCAGATTATCTAGGACTCGATACTCACAGAGTGATTCTAGCCTAGTAGGGCAGATTG

a score=17563
s chr3           100719980 642 + 160039680 gattcaaaTACATTCAATTAAATAAGTATATGATGTAAATATTTTTCTGGTACCATGGCTTATGGCTTTGTAACTTTTAGGACACACTTCCAGAACTTGCTCTGTG-------------------TTCATGATTCACGtctgtgcatcagccctctcatctgtaaaataaagatggcaatggttttatcctcctcat-----------gggtaaagtgtgagttaaaATCCACAAAGCGTTGCTTCCAATCGGGCCTGCTGTGTCTATAAAAGTAACATAACCTGTATCT------TATCTATC--AAGACAGCTATGCACTTTCACAAAATAGGATGGATCCAACCATACTTCCCCGTGGCTTGCTGTTTTCATTTAATGATATGTCTTGAATGTCTTCCCTCATGGGACACTTTTTAAAGTGCGAAGAGACCATTAGATCCTCTGAGTGGTTTTTCAAAAGTGAAAAGTAGTTTGGGAGAATGGGTCCTGGCTCCTCAAGAGCATTCTTTCAAGGTGACACACTAGCTTCAGGAAAGGCCAGAG------------TGAATT--------------CCCGCCCCAGGC--TGTTGTGAGTTGAGTGCTGAGAAGAACCCTGGGGCTTCTC----------GAGCATAAGCTTTGCAGTTATTTAAGCAGTAAAACCATATTTCCCTCAACAACATCTAATGTTG-------------AAGTGAAGCAAT
s HiC_scaffold_1 110696681 694 - 233722169 GACTCAAGTAAACCAGATTACAtataggcaaaaagaaaaaatcttcc--------------aCAGTTTTACAACTTTTAGAAGATACTTCCAGAAATTTTTCTATGCATGTGACCTCAAAAGAGTTTTGTAATTCATTGCTGTGCatc-------ttatctgtaaaatgcagATA---------CTATCTCCCTCATTAAACGGTTGTAAACAAAGCATGAGTTAGTGTATATGAAG---TGCTTCAAATAATGCC-GCATACTCTTTAAGAGTAATATAACTTGTTTTTCGCATTTATCTGTCTGAATTTAGCTATAGACTTTTATGAAACAGGAAGGAAATATTCATATgtcattgaaattt--ttttttaatttaatgatataACTTGAATTTCTTGCCTTGTGGGACAGCTTTAAAAGTGTGAAGAAACCATTAGATGGTTtgagtgattttttaaaagtgaaaagaagtGT-GAAAAATGGGCTCTGGCCCTTCAAGGTTATTATTTCAAGGTGATAAGCTAGCTGAGGGCAAGGCTCGAAAATAATACCTTTAGAATTAGAAGCTTGGTTTACCTGGTGTATACAATATCAGAGATTGAGTGCTGAGTAAAATGTTAGAACTCTTTtatttcaatagtttttaaagtttgCTGTTGTTTAATTAGTAAAACCATATTTTCTCTAACAAACTCTGAAGTTAAGATTTACCCAACAAGTAAAGCAAT

a score=22133
s chr3           100723621 1301 + 160039680 AATACAGTTCTTTTACATTTAAATGATTGCCACATAGTTCCCTAATTAATAAAAATAGAAATGGCCAATTAACTTAGCTGCTGTTCATTACTGTTTTGCATTATCCCATAGCATACAAACCTTGGATTGTGCTGACTAGGTGATTTGTGTTTTATTCCATTAGTGGGTGTAAAGATTTAATGATTATCTCTAATAATTGAATTATGTATTTCAACTCTTGGGTCAGCATCTCATTCTCTACGTATCAGCTCTTCAAATCGACTAAATGTCAATCCTATCACATGTAATTTCAGCTGTTTTCTCACCCTGAGGTTTGCTGGTAAAACTT-GGGAACCACTATTGACAAACGATCTCCTTCCCTAATTAAATA----CTGTTGTGCCTTC-------------------CTGATTGCCAACTTCACCGAGGCTCCCTCCTCCTTCTGCTCTAGACTGCAAATGCACAGCTCCACAGTTCAGTTGCTGCCCCTGCATCTGACTGCATGGGAACTGTCACCCTTGACCTCTGGGTAAGTATAGTTTTAGAGAACTTTATGTGAGCATATGACTTTTCAAAGATAATTTTTTTAAAAGGGAA-AAAACAACAGTTCTTGCAACTG----AAAATTACA---------------CTGTGAAATATTCCACATGTGCCAAGAAATACTTAGCATACTTTTGA----TATGAGCTTTTAAGAAATTAGTGACATGAAATTACACTTGTTTgggctaggaagttatctactgggctcagtaggtgaagtgcttgctgcccaaaaattagggcttgactttgggcccccaaaacctatattcaaagcatgtggggcagaacatgcctataaccccagtcacagggcagaatcaggcag--atccctgaagctctctggccagtcagtgagagactctgcctcaaaaactgaggtggaagtgatggaggaagacttctgatattgacctttgccctctgcatgcatgaacacaAAAAAAAACAAACATATGCATGTACAGCACACACAGAAATTTATATTTGCTTATTATAAACCCTTTGGAAATACACTGACATTTGTATATTTTTAAGTATTTCCAAACAGTTTACACATTAAATATTTTAACTAACCCAGAATTTTCTGGGCATTTTA----TTTACTTTTTATTAAATACTAGGGGATTTTTTTC-------CCTCACGA--ATGAGTAAGAAGTAAGAAAGAATTCTAGACATAAATATTCATCTTCATCTTTGATTTTTCACCCTTGCGTTAAG-TCATGTCTTCTGATGTCAGATTTTGTGAATAGATTAATAACTTTCTTAGTAACACTCCTAAATCTCTGCCTATTA
s HiC_scaffold_1 110697751 1084 - 233722169 AATACAGTTCTTTT-TATGTAAATGATTACCACATAGTTTTC-AATTATTAAAATTGGAAATGGTCAATTAAATTAcct-ttgttctttattattttacaatGTCCT------TATAATCCCTGCATTGTGTTAACTATGTAATTTGTATTTTGCAGGATTAGTGGATGTAAAGATTTACTGATTATCTCTAATAATTAAATTATGCATT------------TCAGCATTCTATTTTCTATATATCAGCTCTTCTTATCTATTAAATGTCCATTTTATTGTCTGAAATTTCACTTGTTTTCTCATTCGGAGGTCTGCCTATAAAACTCAGAGAACCACTATTGACA----GTCTCCTTCACTAATTAAATAAGACCTG------CTTCAACAATGGAAATGTAAAAGATGATTCTAGACTT----GATGTTACTTCTTCCTTCTGCCAT-GACAAGTAAAGAACAACTTCTTAGTGGAGATATGGTTATATCACCTCTCATTGTAAGGACTGACCCACCTAATTTCTACCTTGGTACAGTTTGGCTGAAC----tgttagcattt---tttttaaaaaaaaaaattacaaaagcaagcaaaaaagtAGTTTTTGAAAATGacccaaaattatatttttaaaatttgccttgTGAACTGTAACACACATGCAAAGAACTATTTACAATAAAGTAAAGCTCTATATTCTTTTGAGAAGTTAAGGTTATGAAATCATCCTTATT----------------------------GTAG-------------------ACAattgagg-----------------aaa---tattttaaaagtat-------aaaagagTCTAATGACT--------------------GGCAATTACTCATGAAT-------------------GAGACT-----------------------GTGAT------------------TTG---TTTGGTttctacatatttaaat-----------------tttctgggtAC----------------TGTATTTTTTTA----------CTCAGCAATA---------TTGT---------AATATTTCC-------ccactcattaaatattttaaatgatcttgAATTGTAAGACTatcttatttctttcccttttattgaaCACT----GGTCTTTCTCAGAAGTGTTTCATTATCATGAGTAAGAAG--GCAAATAACTTTAGgcataaatatttgttttcctctttgacTTTTTTGCTTTACATTAAGATGATATCGTCTGACTTCAGCTCTTGGGACTGG-------AATTCGTTGGTAATATTCTTAAATCTGTGCTTGTTA

a score=97253
s chr3           100727491 3269 + 160039680 CCTGTCTCTCTCCAACCCGCTCCCTGTTTTCTAGCTATTACTACCTTCTCTCTGCTATATAATTGCCCTTGGTTCCACCCAGGGTTTT---------------------CCCTGGCCCCTAT--ATACTGTCATCCTGACTAATGTCAGTATAGCAAGGTTACTAGAAAGAGCAAAGGCTATTGGACTGGATTTAGATGGAGTCTTTTGTGACTCGGAGTAAATTGCTTCATTTCATCAAGCTGAAGCCTCCTGATCTATAATATGATTTAAAAGAATCATAAGAGATGTCATGAAGATTATAGAATG-AATGGATATGAGAAAGGCCTTAGTTAAG---CTTTTGTCTCTCCCACCTCCCATGGAAACT-ACATCCCACCTGTGAAATCAGAG-ACACTAATCGGGCACTCTTAGACCTTGTAACTTCCTTTTGAAGTTGTCTCTCCCTGCATCCAGAGAACTCTTTGGCTCCAGGACTTCTCTCTCTTATTTATCTGTATCCTCCATGTGCTAGCCCAATCTCTGGACCACGGCAGGAATCCAGTAAATATTAAGTGATAACCATCCTT--------TTCCCTATGTGATCACGAGGAAGGCTGGGGCAGAGGGAACTGGGCTGTAGAATAAAATT----GAAAAGGTTTGAGACTTGGGAGCCTGCCTGGTGCTGATGCTGT-TGCTGGCACAGCAATTGAACAGAGG-AAGAAGGAGCCAGTGGAGAGCTGTTTTGCATATGGACCAGAGCATCCTCCCACTGGCCCAGCTCATTAGTTTACTTA---CACAGAGCTGCACAGTGAT----------ATCACTCACTCAGTAACACCCATTCTCTGC---CTCTTGTT----------GCTGATGTGCTTGTCATATCGTT----TTCGTTCACGGAGTGTCTTTTTGGTTTAAATCTCTTAAATTTATTTATTTTTTTCCTCCTTACTGTCCTGGAGATAGATGAAGCACAGCCAATAAAAAGGGAGCCCTCTTTT---CCTTCACAGCTCTGAAAGCTTTACATAAgtgtttcctcacttctattttatggccaggaccagatgcagaagtgctaaaatattttgataagagctgtcctggcagtagtttttgcTTTTACAGCTATCCAGAGGGAGAGAATTAAGTAGGAAGTCAGCCCACAGAGAAGAGAGAGGAGAGAGAAAGCTATGAAATCTCTCTGCTGACTGAGATTCACAGTTCACTTCAAAATTTCAGTTGGACAAAGGCAGAAAGAGAATGTTTAGGCACCAGGACAGTTACCTAAGTGAGAATACAGGAGGAAC--ATTCGAAGGTCATAG---------------AATCCTGAATTT-----TGAAGTTTATAAAGTGCTTCCATGCATAAACTGATATGCTCAGAACCCTGAATATAAACATGTGTACC------ACAGTGACCTCTAAGGTATGAACTATTAACAT-CTCATGCAATGGCGGAGACTGGGCCTCAGGGCT----TGTC---CAAGG----TTAGCTGTTCAGTGGCTAGGTGGGTGTTTAGCTACTG-----------------------------------------TTGTCC---------AGGTCCTTAGG------------------------------------GTTTGattttcagg-gaggaatgagacacacagaaggattaaatgagctgcccaaggtc--acagaacacaaagcagaggagattGGTCCGT-----TCTATGCTCCGTATCTGGGTTACCACCTCCCTCCCAGCCATCCACAGGCCTTACCTTCTTTTCTGTCTTCTGATGGTCTCTTTATCTTGCCCCTTCCCCCTTTTCTTCATTTTACTTCATTCTATCTTATTCCTCCTCTGTGTTTCCTTTGAGGGTCGTTTCTGTCCCTCTTCTGTGCTCTAACTGAGTGACTATATTTCAACTTATGTGCCAGAATCcttgccacaagctagaca-cagtccgagcacactgcaagtgtttactggctttttattccccacaacaggcctaggaagcaagcc-tatgatttattcttattttacagatgagggaaccaagctaccttatttacccaaggacacacagctagcagggacaagagccagcatttgaggc-gagcagtgtggcttcacagcccatttgaggctgttttgcagcagcttcccttTATGCCTGTCTTGGG-------GTGGGGGCTGGAGGGTGCATAGGCATAGCTAGATGTGCCTAGATGTGGATTCTCTGGATGTCACTGCTGT-TACCCCTGCCTCTCTA------ACATAAGTTCAGACAACGCAATCCAGAATCC-TGGGAAGTGACTCT-GAGGCCGGAATTTCCAAGGGACACATCAAAGATGAAATCACAATACAGGTTTTTCTGTGTCTTATTTCAGAATTCTATTTTTTTCATTAATTGCTCATTTATTAGGCTGATATTGCCTGATATCTGTATGAAAAAAAGGCATAAAACAGCTAAATGAGTAAACCACTTAAACTGTGACTTCATAAATATGAAATAAACTAATAAACCA----------GTTGCATGTGTTTGCATCTATA-AAAATATGCCATCTTCCAAAGGGAGAGAGATACTCAGGCTGACAGAAGGGAGAAAAACCAGCGTGGGAATAGTAATGAAATAAAATGCTTGAATCCAATTTCCTTTGGTGAGATGTATTAGATTTTAATCATCAAAACCAAATGCCCGAAACTCATTTAAAGCCAGATCAGCTAAAATCTGCCTTCTATTTATTTACAGGGGTCTCATCTTTCATTTG-CACCA-ACTAAAAGTGCCATGCACACGAAACTGAATGTTACCCATCTCGGTCTCC-----TCTCCCTGTCGAATGCCTGGCACGTAG-AGGTGCCCAGTTCATGCTTATCTAATGGAATTCTTAGAATGTCTTCTAAGAGAAGACATTTCAGGACTTGTGCATTCCACACTCATCCCAGA-AGAGAAGGATGAATGTGAGGCTATGCTCTGTTGGGTACAAAAATGAAAACAGTTGCCATCTCAAGGTTGGTAGCTTAAGAATTCTGGGTCCCTGCAGTGGAGCCTCTCTGCAATGGAG-ATTGGCTACACAGCACTTGCTCTGTCAAGGTTTTCTCCAACATCGTTGCAATTATC-CAGAGCCTAA----------------------GAATAAAAGAAGAGAAATTTCAGGAAAAGGTAAATAGTTTCTCATCATAGTTGATCTCAAGTTGCAGTTCGTTTCCCAAACTACTTAGGTTTGAAGTCAAAGAACCTGGAAATTAGAGGCCAACTTCCTGATATCTTTAGGTATGTTCAGTAACCTGTGTGGGTTTGGGTGGGGGGTGTGGTCACAAGATAGACTTCCCATCCTTTCCTTACTGTTGACAGAATCAATTGTGTAATACACATAGGGGTTAGTCAGCTATAACTCACAAATTCAGTCTGTACTACTCAAGAAGAGTGTACTTAAAGAAGGGGGCT
s HiC_scaffold_1 110701030 3370 - 233722169 cttttctttatgtaaTCTCCTCACTGTACCCTA----TTCTTCCCTTC---CTGCCATGAAATTGCTCACAATTTCACCCAGcattttataacaattttttctcttttcctctgaaTCCCACCAGCATTGATATCATGACTGATGTTAACA---CAAGGTTACTGGAAAGAACAGAGGCTTTGGAGTCAGACTTCTATACAGTCTCTTGTGACCTGGAGTAAATTACTTAATTACATTGAGTCTCAGTTCCCTAAGATATAAAATGCT-------AATCCTTACAGATTTGAAGTGGATTATAGGACACAATTgatataagaaa--cccaaattaaggtttttttgtctttcccaCCTCCCCGAGTGGCTCACTCCTCTTCTGTGCATCCAGGGCATTCCACTCTGTTAGCACTGTGCATTGGA--------CTGCAGTTGTCTCTCTCATCTCTCAGAGTACTTCTTGAATTTAGGGCTTTTGTCT------TATTTACATACCCTAGATCCTAGCTTAGTGTCTGGAACATGGTAGGTGTCCAATAAACATTAAGTGAGTGTCATCATTGTTATCCATTTCCTGTGAGATCATAAGAAAGGCTGGCATAGAAGGAATTAGGttacagaagaaaatgagaaggagAGGTTTGGGACT-AGGAGACTCACTGATAGAGATGTGGGATGCCAGCCCAGCGACTGAACAAGGTTAGGAAGGATTGCATGGAGAGCTGATTTGCATATGGATCATTGAGTTCTCCCACTGGCCTAGCTCATTAGTTTACTTGGTGCATAGAGCTGAACAGTGCTCAGGGGAGAGATAATTCACTCAACAGCATtcactcttttttctctcttgtttatcTTAGTTGATGGTGCTCATGTCATATCTTTAAGTTTTTTTCACGGAATGCCTTTTTGGTTTAAATct------ttaagttatttttt----ccttgcTGTCCTGGAGATATATGAACCAGAGCCAATAAAATAAgagctctctttttttccttcacagcTCTGAAAGCTTTACATAAGTGTTTCTTCACTTCTATTTTATGGCCAGGACCAGATGCAGAAGtgctaaaatattttgataagagCTGTCCTGGCAGAAGTTCTTGCTTTTACAGCTATCCAGAGGGAAAGAATTAGCTAGGAAGTCAGCCCACAGAGAGGAGAGAT------AGAAGCTATGAAATCTCTCTACTGACTGAGATTCTCAATTAGTTTCAAAA-ATCAGTTGgatgaagacaaaaagaaaatgtttatgctTT--GTCAA-TAGCTAAATGAAAA-ACAGTCTAAATGAGTTGGGAGGTCAGAATAATCTCTTCTATTTAATGGTGAGTTTGGCTATGAAATTTGTGAAATGCTT-TATGTACAAAGTAATGTGTTGAGGCTTCTTGAATTAAACACATTCCCTGACCTGACAGT-ATCTATAATGTAGGACCTATTAGTATCCTCATGGAACAGTTAAAATCAAGGCCCAGAGGTTAAGTGTCCAGCAAGGCCACTTAGCTGGTCACTGGTAATGTTGGCATTTATCtgctaatctttctttctttcttggtaccgggatcgaactcatgaccttgtgcttactgggtaggcacttatgccactgagctatgtccccagtcccCCACagcctttcatttgtttttcaggaGAGGAATTGG----GGAGGGGGGTCCAGAGGGATGTATAACATCATACAAAACAGGAAACACAAAGGTATAGTTCATTTCTGTCCACACTCTGCAGTGAGGTCAGCACCTCACTCTGTGCTACATACTGGCC-TGTGGTCATTTCTGTCTT---ATATGTccattctgttatttctctgcacATCTCCTCATGTTGCCTCTTTGTGTCCTTTCACTCCTC-------------------------------CTTACATATTCTACAGTCATGACTATGCTTCAACTGATGTGTCTG-GTCCCTGCCACATGCCGGACATTGGTCTAAGCACATTGCAAATACTAACTCAC-TTTTATTTCCCATGACGAGCCTATGAGGCAGACAGTATGAttcatcctcattttacagatgaggaaaccaagtcACCTTAATTACCCAAAGATACACAGTTTGTACAGGGAGAAGCCAGAATTCAGGGCTGAGCAGTGTGACTGCATACTCTATTCTATATCACTTTGCTGCAGCTGCCTCTCA-GTGAGCCTTGAATGTATCTATGGCTGTCCTTGAGCATCTGATCAAACTTAGGTTTTCCTGGACACAGATTCTGTGGGTGTCATTATTTTCTACTCCTTTCAATCTACTTGATATGTCAATTCAGACACTGCGATCAAGACCCCTTGGGAAGTGACACGAGGGAAAAGAATTTTCAGGGGGCACATCTGAGATGAAATTAAACTCCAAGTGT------------TCTcag----tcattttttcatttatttgttcattctttaGCCTGGCATTGCCTGCTGCATGTCTGAAAAATAGTTgcaagataa-taaaaaatgaagtaactttaaaaattgctttaCGAAGATGAAATACACAAATAATCTAGCCTAATAATGTGGGATGCGGTTTTAGCCATagaaaatttatcattttccaaagagagaaaaggatTTAGTCTGACAGAAGGAAAGACAACTAGCATGAgaatcataatgaaataaaaattctgaattcaATTTCCTTTGGTGAGATGCATTAGATTTTAATCATCTATACCAAATGGTGGAAGCCCATTGAAAAGCAAATCAGT--AATTCTG-----TATTTACTTACAGAACTATCTTGCTTCATTTGCCACTAGACTGAAAGCTCCTTGCATATGAAGCTGAAGGTTACTTATCTTAGTCTCTAGGAGAATGctggcacagtgcctgacatatagcaggtgctcaataaatgtttattgaattgaATTA--------------AAGAGAAGATATTT-ACTACTTATCAATACCACACTTAACCCAGAGAGAAAAGCATGAATATAATGTTAGGCTCTATTAagtgcaaaaatgaaaacaaatgccaTCTCAGGgtcagtaatttaa-aatatagggATTCTAAAATGAAGCCTCTCCACAATGAAGCATTTCTTGCAAAAAAATTTTCTAGTCAAAGCTTATTACATCACCACAG--ACTATCTCAAAGCCTTATTTTTCAATTCCAATATTTCCTAGATCCCAGAATTAAAAACTCTGAAGAAGAGCAGTAATCACTCATTATATTTGATCtcaatttaaagttttttttaaaacctacttAGATGCAAGGT---AGAATTTGGGaattggaaa-cagttttgttatttttctaggtttgtcagat--------ttttttttggtgaagAGAGAG---ACAAAACATAATTCC--------CTTTATCAATGACAAAATCAATTACATACAACAAAT--GGATCAGCTAGGTGTAAACTGTAACCACAATCCTTACCACACAAGA------TGTTTAAAGAAGATGGTT

a score=21737
s chr3           100731275 602 + 160039680 AGAGTACAGGAGAATAGAACAATTGATCCCTA--CATCACACAGCCTGAGGAAACACTGAGATGGGCTGACAGG----CGTTCACCTTATTTGATCTTTCAGATGGAAAGTCACTTTTTTTTTTTCTAGGAAAAAATGAGAGAAGATG---AATAAGAGATGAGGAATAGTATCCCCATAGAAACCCCTCCATCCAAAAACTGAGGCATGAAAACCAATTGTCTCCTTCAACATATGACACATGTTGCAACAGATGCACCATACTGATGATAACTTGTGTGGAATCCCGTCTCTTAGCAATGatttattggattcttgttatgtgccagataccatgcc-aaagctttgcaaatatgttggcacagtgaatcctcaaaatatccctaggagAgacaacagtttggtgtttccctcaagaaattaaatagcgatttagcatatgaccctgtagtttcatttctgaatgtatg--ctgaaaagaattagaagcaggtgtctca--aaaaacccacacacggccatattcggagccacactattcatagcagcgaa-----------------------------gggtggacacCTAAACAAAACAAAGCTGATTGCAATAGAACATTACTCAGCCATAGAAACAAA
s HiC_scaffold_1 110704541 635 - 233722169 AGAGTGCAGGAAGTTAGAAAACATGCCCCCAAAGCAT-ACGCATAGTAAATGAAGAGTGAAATGGGCTGACAAGAGCATGTCCAGTTTGGTTGGTCTTCCCGATTGTAAGTCACAGCTCTTTTGCT--AGAAGGAGTGAGAAAAGATTTGCAATAAGTGACATAGACTGTTACTCTAATGGAG-CTTCTGCGTACAAAAACTGCAGAAC--AAAGTAATTATTCTCCCCAACATATGACACATGTTGCAACAGATGTACTCTATTGCTGATAAGTTGTGCAGAATTGTATCTTTCAGCAATGATTTATCGAATTCCTgctatgtgccagacactgtacTAAAAGCTTTACGAATGTGTTGGCGCATTGTATTCTCAAAAAAAGCCCAGGAGAGAAAACAGTTTTGTGTTT-TCTCAACAAGTTAAACATAGAATTagcatatgacccagcaattccttTCCTGGATATATACcctcaaaagaactgaaaacaggtGTCTGAACAAAAACTAGTAT---GCAACATTCATAGAAATACTATTCATAATGGCCAAAAAATGGAAATTGCTGAATGTACACCCACAGATGAACAGTTAAACAAAATGTGGTGTATTACAGTAGACTAttactaaaacataaaaagaaa

a score=36698
s chr3           100732933 2425 + 160039680 TCATGTTTATATGCAGAAGTTGTAGAACTCC---AGACATTCTCAGGAAGGCAAAGTCGGAGTTGCTAAACCACCTGGCTTCAAGATACACTGTCAACACTACACTGC--AGGGCAGAAGACACCAGGAGAAACAACGCATTGCA-CATTGCTATAGAACAACAT-TCTGGGAGCCCACCACTCATGTCTACAGCCAAATGATTTTCAGCAAAGACAATATAGTAACTCAACTGGGGCCGGGGCTTGACAAGTAACT----------TGGAACACTGGGAGAATTCTATGGAAAAGAAGGCAAAGCTGCAATCTGAACTCATACCTCTCTGTCTCAGTCTGTTTCTC----------------------CCTTGTTCTGTCATCACCCAACCGCCCCCCTTTCCCCACCCTGGCCACAGACAACAGAAAGGTGAGTCTGCAGTGATGAGCATGTATGTCTGTGTGCGCATGTGCGCCCTGCTGTAAAGCGGggtggtggtggtggtggtggtTGTTGTTGTTGTTTGTTTTTTGCCAGGAAGAATGAGAAATGAGCAAGTACGTGGATGCTTGTCTCTGACAGAACTGC-TCTGCTCTCTGT----------CTTGAGATGCCTGGGATCTTGCTGTTGCTTTTCAAAAGGGG---TAAGAAGTTTGTGAAAGCTAGAGTAGAAAGTCACATGTGT-------TTGCATCGTTCCTGGAAAGGTCAAAGTGCAGCAGAagccaggcacggtgtcgaacgcatttaatcccagcacttgagaggcagaggcaggagagtccctgagttcggggccagcctgg--tttgcagatggagttcgagaacagccagCGGCATAATGAGTTTGAGGTCTACGTAGGATGCATGAGGCCTGGTGGCAACAACAAACCACCACTGTGGGTTCGGACTCTTAGCTTCCTTTTCTGAAAATTCAATCATAAAGAACCCCCCCCCACACTCTCTCTCCCACCTGCCTTTTATTGAGTTCAAATGAAATACT--CTGCCAGCTCCTTCTGAAAACTACGCTGGAAATGTCACAAATTTGAGTGTCATAGC--TCCGTGTGTACTTTTTGTAATTTCTAGGTAGTAGTATTACTTTCTGTTTCAAATTTCAAATTTACATATCAAGTATAATCTATAATTACTTCTCTTGTTCCTTTTGTGTTTACAGAGA--------------TAATGATTCAGAATTTTCTTATTAGTGGCATTCTTACATCAAAGACAACTtttatttaatgttttatttattcattt--taattatatatgttttacttttctcacgcattcatttatctgttcattcattCattcatccattcaggacaagttcttactgactgcctactatgagcaagatagtttaagtgcaaaagataAATGAATG--------GAGACTTGGATTCCATTCACAAGAGGTTTAGCTCCTATGACAATACAAGCACA--------GACCATTTAAGACGCAATGTTA-TTACTGATAAGGTACTTGGGAGTACCATCCATGGTGGCAGGCAGGGCAGACTTC------------ACAGAGGAGGTGATGTTCAAAATCGAGACCTCAGAAAGAAAAAGAGATTTTGTGAAGGCGACCTCGATAAAGTGGAAAATACAAAACACACCCAGTGTGGAGGGAGGATGGTGTGATGGCTAGGCTAGAGTCAGGCTGGGAGGAGGGCAATAGACAGTAGTAGGATATAGAGGGAGAATAGTTAGGTCGTTACTGCAGTAGCTGTGACAAAATGAGGA-AGCCAGACCCAGGTTCACGGACATAAGGCTGGGCATGAGAAGAACGATTTGAAACTGA----AGGGGTAGAACCGAGATGACTTAGCAATTAGTTAATTGAACGAAATGGCTAAGAGCAAAAAGTGCTCCATTCCACTTCTCCctagcgatgtggccttgggcacagcgcctggcctctgagttcccagttttctcatttagaaaatgggaagtaataataactgattcatacagttgctgagagctttaaaagtgctcactgtgaaagcCCCCGTCACAGGGTCCTTGTACAAATAGATTAGAC-ACGGATATTAATTTACCACCCAC---CTCCTTCTCTGCTCGGCTCACACTGAAGGG-------CTCA----ATGCAGACTTTACCCTCTG--------------CATCTGGGTTTGTGGCTCTGCAGGGGCACACCTCCT---AAACCACATCTGTGGAGTTTTCATTAGAACGCTCTAGGCTAGATACACCATG-GTTGTGGTTGTGTGGCAGTTTCTGTGTTCCTTAACTATCTGAGAAATCGACCTGAGCTCCTAGCAGGAATCTGGAAGTTCACGGGTGAGGTCTGTCGGTGGAGATCCTGCTCTGCTGTCCTGCCCGACGGTGGAGACCCCACTCTGCTGTTCCGCAGACACTGTCCTATTCCATACCTCTGTGACACAG--CAGTGGGAG-TAGGACCCTCT-GTGCTCCTACGTGCCTGCGTGACTCT---GTCTCTCTTCTACTCCAAAAGAGGACAAATGAAGGATTT
s HiC_scaffold_1 110707009 2305 - 233722169 TTATATTGATATGTAAAGAATTCAGGATCCCCAAAGAAatgccaaagaaaacaaaattaaggtC-TTAAGCTACCTGACCTCAAGACTTATT-TTAATGCTACACTATCAAGACCACATAATatcaggaaaaacaaataaataaatcattggGACAGAGTAGAGTGCCTAAGAACAGGCCACTTATACATAAAAGCAAATGGTTTTTAACAAAGGCACTACAACAATTtg--tggaggaagga----aaatgtGTCTATCCCCATGGTGGAAGAATTAGAGATCCACATGGAAAAGGAAGGAGAGCTTCAGTCTGAACCTATGTCTGTCTGCTTCTTTCTACTTCTCTTCACTCATTCTCTATCCCCATCCTTGCCTCGTCCTTGCCCAGCCTCCCTCC----------ATGGACACAGTTGGCTGGGAGGTGAGTTCA-------GAGCTTGAG-----ACAGGAGCAGCTGCATCATAATGTCA----------------------------------------GCTGTTTGCCAGGAAGGCTAAGAAAAGTCAAAG-------AGTCCCAACTCTGAAAGAATTTtgtctgccttcagttttttggTCTCTTTAGATGCCTGG-ACCTGACTGCTTATTGTCAGAAAAGGATGTGAGAAAATTGTGAG-GTTAACCTAGAAACGCATGTCTGTGAGATGATCACAGTCTACTTTTCGAGGTCA---TTCTGCAGAAAC--GGAGAAATGCTGAGCTT-----------GCACTC----------------AGAATTCTTGGGTTCTGTTCTATCTTTGCCTTTGTG------------------------------TGACTTTG---------------GCACG----------------------------TGTGACTTtgatct-tcagttttcttttctgagaaatgGAG-ACAATAAACACCTCTCCTGATTTAC----CAATCGGGTGGCTGTTAAgttcaaatgaaaaacaaactacAAGATCATT-TGAAAACTATG----AAGTATTACATAAATATACTTTACAGTATTTTCTATGCACTTCTTGCACAGTGAAGTGAATGATAttactttctgttttaaattgaaaatttgcATATAGAGTATTCTCTATAATTCTGTTTCATGTCTCTTATGTGTTTAtagaaaaattagtattttagtAATGATTCAAGATTACCTTGTCAGTACAGTTCTTGGGTTAGTGATAACTAGTCCTTGAAGCTTCgtctattcatttctttattcaatatcttttgaaaatttcattcttttttaaa-------attcattcatttatgt-taCTTGACAAGCTCATACTGACTGCCTACTACAAGGAAAACATTCAAAGGGTGAGGGATAGATGAATGAACAGAGAGAGGCTTG--TTCTGTCCACAGAAAGCACATagaggatgtcaatgtagacacaCCCTTTTAGCTCAATCATGATACCCAGTTAATTGCAGTTAAGG-ATTTGTG-----CTTGTAGAGTTGCTCTGAGGGAAGAACTTTTTGCCTGTGATGTGAAGCATGTGACGTTTTAAATTGGGAACTGAAACGGGAAAA-CGATTTTACCAAGACCGTCTAGAGGGGGTCATAAGGGCAAAGTATGGTCAAAGTGGAGGACGTATGGTGGCCTGG--AGGGGAGTGTGGAGCAAAGGGAATGGACAGCGGAAATAGTGGGACACGTAGGAAGACCAATAAGATGGCC-CTGCAGTG--TAAGGTAAAATGATGAGAGCCCTAATTAGGCTCA------TAACGTTGGCAA--ACGAGACTGATTTGAAACTTATTTAAGAGGCAGAACCAAAAGGATTTAGCAGTTGGTTAATTGAATGCAATGGCTATGAGAAAAA---TCTTCTTTCCATCCTTATTAAATGATGTGGCTTTAGGCACAGTGCCCAGCCTTCTAATTCT--GTTTCCTCATTTAGAAAATGGGGAGTAGTAACAACTGACCCATCAGTTTGCCAAGCACCTTAAAGGTGCTCACTGTAAAAGTA-------------CCTTGTACAAATAGATTTTTCGACTAATATTAGTTTTATTTccacaatatttttttctcttcagcccATAATGCAAAGTCATTCTTTCAACTTATGCAGCCTGTGCTCTTAGAAAGATTCTAAAAACGTTTGGAGTT-TGAGTCTGTAGGGGTAGCCCGCTCGTGAGAACACATCTCTGGAGTGTTCGTGATA-------AAGCAAGTGAGTCCATGTTTTGAGCTCATGTGGTAATTCTTGTTCTCCTTTACTATCTGAGGGAGCAACTGGAGCTCATGATAGGGTTCCAGAAATTTCCAAGTGA-GTCTGAAAGCCTGGCATCTGTTCTTTGACCCTACCTTTCAAGGTGAGCTTTCCTC-----------------------ATTCCAAGCTTCTACGACAAAAGCTGATGAGAGCTGGGATTCTGTGGCTCACCTAGGTA-CTGCAGGACTCTTGGGTCTCTTTCCTCCCTCACTTTAGGGCAAATGAAGACTCT

a score=24708
s chr3           100736056 1036 + 160039680 TTCTCCTGGGTGTCCTGGCTTGATGACATGGTGGCATTAAAGGCAGCAACACTTGAGG---------AGAGTTGAGCAACCCCAA----AGAGAGAGGAACAGACCTTGGAAAAAGTGG-TTGACTAAAGAGT-GTCTGCCTGGAGAGATGTTGATTGAAAGCCCCTGCAGTCTACAGAGGCCAAGATAATTAAGGATGTTAGCTCTTTCGCAGACTAAATGTTCCCTTCATTTCTGGCTGGCATTTGTTGGGTGTAATTGCTGAGTAACTTAAGATACTC-TCATACACAAATAATAATCAGTGAGCCCCACTGCCTGTGGTCTCCATACCTGATGAGAATTTATGTGCCCTTTTTATTTTTCCAAAGTGGATTTGAAGGTCTGCCTCTGCTGCCCGG---CTCCTGCTGCTTGGCAGATGATCTCTGCAGATTGCTCAGGTCCTGAGTGCCTGGGAACCCTATTAAGTCACACTGAAGCAAAGTCGTTAAT------------GAAACCCCTGGCTCCACTTCTCATTTCTTGTACCCTCTTCTGTGATGGAGCTGTG---ATGGTGTGAAATGATGTGCTAGAACTTTAAGAGGAATTGAGTTCTCCCACAGAAACTCTCAGT--GGAGGGCCACGTGGGTCTCCTGAATGGTGTGTCTCTATGGTGGGGAACAGATGGGACATTTGCCTCTTCCTGGCAAGTTTCTGGGCTTCAGCATGGGGAAATCATAATGAATGGAGGGTGGGTGGTGGCAAGTGGTAGCAGGCT--TCACTCAGCACACAGTCCCCAGATGTCACCAACCTAAGTCCGTGATGCTGAAGGAGGACAAGTCATTAGGGTAGTAGTCGAAGCTAAGTGATAATCACTACCATGGCAATCCATGCACAATTAGCCCATAACTGTCTTCTAATAAGCGCCAAGAGGGCGGACCTTTAGTCTGTCATGCACAGGTAACCCCACTCTCACCTCAGATACATCTTTATTTCTACCCAATGTTCCTCTAAGGCCGTGAACTTATTCCTTTAATTTTTAAAAAattttgcatgtataggtattttatctgtatac
s HiC_scaffold_1 110709475 1026 - 233722169 TTCTACCCAGTGTGCTGGCTGAACCA---AGTGGCATTAGAGGAAGCAGCACTTTAGGGTGAGAAAAACAGTTACGCAGCGCATACTGCAGAGGTAGAAACAGACCTTCGGAGGAGTAGATTGGCTCTAAAGTCTTCTGGCTAAAGAGATGTTGATTGAAAGCCCCAG-AGTCTTTAAAGACTACAATAACTGAGAATTTAAGAATTTTC-----TTAaatgcttcttttatttctggcGGACATT-GCTTGGTGTTATGGCTGAAAAA-----GGAACTCGTAATACA-----AATAATTAACTAGCTCCTGTTCCTATGGTCAATGTACCTCATCAAGATTattgctgcttttttaaaaa-ctaaagcagaTCTGAAAATGTTCCTTTATTAACTCATTCCCCCTATTACTTGGCAGATTAGTACTACAGACTACTCAGATCCTGAGCTCCTGGGATCCCTATTAAGACATATCAGAAAGAAGTCCTTAATGATTTGTCCATAGAAGTCCTGAGCTCTACTTCCTGTCCCTGGCACCCTCATTTATAATAAACCCTGGCCAATGATAGGAAACAGTGTGCCAAAACTT--AGGGAAATTAAGTTTTCCCACA-AAACTCTGGATCAAGAAGGAAATTTCAGTCTCTGCAGTG--CTGTCTTTCTGGTGGGGAACAGCCGGAATA-TCACCTCTGCC---CACTCTACTGGGTTGCAAAGTGGAG-AACCATCGTGAAACTAGGATGTGTGGAAGACAGTAGCCTCCTCCTCACTACTCAGCACCTAATCCTTAGATGCTGTCAGTGTAAGTTTATGGCCTTACAGAAGTAACG-----TACAGCAGTACTAGAAGCCAagttttaattataataataaaaacatacatacaatGAATTCTTAATtatcacataataaaaatcaagagaA-GATCTCAGAAATTGCAATTCTCACATAATCCAATT------TCAGACACACGTTCTTTTGCATTCAATAGTCATTGAGGGCTGTGAATTTATTCTCTAA----TGAAAATAATTCACATTTATATGTGTCTT-TTTATATAC

a score=24003
s chr3           100737763 1435 + 160039680 AATGTTAGAGAACGACTCATGAAGGAGAAAGGAAGGCTGACAGATACACCACCCTCCAGACAGAATCTTCCACAGGTGCTAAATGAGTCATTTCTCATTCTAGGAGTGACATGCTAACTGTGGGTCTGATGAGTT----GGGTCAGAATGAGATCTGCTCTCAGCCT--CTGCTCACCTTCAGCGATCAGAATTTCAATTTCTTAATAATTTCTGTCACTGCCGG-CTGTGTCTAAATATTTAGGCAGATCTGTGC-GAGTCGTTTTGTCTGTTTGATGTGCCACATATATTTATGTATTCCGATTGTCAGTCAGTAAGCAAGCCACGCCATAGGAAGCAGATGTGATCTGACAGTTGCCAAATACAGCTCTCACTTTCTCCAGCATTCCCTGTTCCTTCCAAAAAAACAGGCCTGGATTCTGCCTTAGGAGTGTAGGTCCTGGAGGACGTCATTCCCTGAAGGTCACCCCACACACTCCTGTCCAGTGAAATAG--------CCACACCTTCAACTCTTTCCCTGAAGTC-----------TTGATTTCATATTCTCAGCCCATGTCCACGTTCAAG-TCAAGAACTTCATT---------TCATCAGGCA-------TATGATCAGAAGCAATGGAATCTACACATTCAGAGTTATGATAACTCCTGTCTAAAACAGTGCTTTCGGAATGTTCTCCTGTGGTGTCCGCTGCTATCTCTTAACTCCTA--AAGGGTGGAGGAAACCGGGTTTCCTTGAAT---TCTTCTCCTTTGCCTcctactttaacttcaccaaatcattcttgagagcttgtttggaggttctagcaggcgccacggctacttgtatgcccttaactgaagactaggcctcctctcttctgggagggatacggatggagtgatgaaagaggaaaaggaaaccgatcagatcatgcgaatcaaccctgatggtcagtggggcgaccgatgctgaaaccacgtcaccttcacctccGCCACTAAGTCCTTCTGGTTAAATGGTTTTGTTATCTTCTCTCT-GTCTTCCCCTTTGTGCTCCAATCCCTGCGGTCTTGGTTCATTCATTCCCTCCCTACTCTCTGTCAG-CAACTGTAGCAGAATTGGTGGGTGTTTCCTCCGTCAGACTAACTGA--AAACTTTCAACTT------------------------AACTTTCGTAAGGCTTAGTTCATACGAAGGCCCTGCTCAGTCTGTCCC--CAATCTATCTCAGCAGTCTCTCCTCATCCATACAGTGCT-CCATCTCCCCACCTCTCTATCCAC----TCAGAGATT-------ACTTTTTAATAAAATGCATCTCCTAGCCTCCCCTGCTCTGATCTTCCCATGGCTGTCATTCCAAGCCA-TGTTGAGTCTCATTGTTGCTCACCTGCTGTGCTGAGGTGACTGCAGATGACAGCAGTCATTTGAGGCTTCACCTGGCTTCATGGTCTCCAATTCATCTTCATGTGTTTTTCCTGCTGTAATAATATAT
s HiC_scaffold_1 110712562 1336 - 233722169 AACACCATAGGAATATTTACAAAGGAGAATAGAGGAATGACATAAAGTCACTCAATTAGA--GAATCTTCTACCA-TGTTGAACAGTCTTTTCCTCATTCTGGAAGTAACACGCCAATCACAAGCCTGCTGATGTATCCGGGATGGAATGAGAGCTGTTCTCTGCTTTACTGATCTCCTTTAGTgattagaattttaatttctcaATAATTTCTGCCACTGCTTGTCTGTGTCTAAATATTTAGGCAGATCTGAGCAGAGCAGATTTGTCTGCTTgatatgtttcatatatttatgtattctgATTGTCAGTCAGTAAGGAAACCACGTCACAGGAAGCAGATGTGATCTGATAGTTGCCAAATGTGGTTAT-ACATTTCCCAGCATCCCCTCTGCCTATC--AAAAATAGGACTAAATTCTGCTGTGG-------ATTCCTGGAGAACTCAATGAACTGACGTTTGTCTTTCACATTCA-GTTCTGTGAAATTGTGGATATATCATAGCTTTAATTACTTTCCTAAACTCTGGTCAAATTATTGATGTGATGTTGTTAA-TCATATCTTCTCTCATGTTCCAGAGCATCCTTCCCAATTACCCACTAGACATGGGTACTGTAATTGGAAGCAGCCAAA--CATATATCCAAAAT-----TCAATTCAGGCTAAAACATTGC-TCCTAAACTTTCTATCTTGGTGAAGGCTGCTACCACTTAGCTCCAAACAAAACTAGAAACTTCAGAGATTTCTTGAAGCCATCTACTCATTTACCATTCACTTCAA-TCTATCAATTCATTC-----------------------------------------------------------AgattcatctttttgtttttgagggggTAT-------------------------AGGAAATTGA-------ATACAGGGc--tcctgcttgcaggcaggtgccgTGCTGCTGA---------ACTATAACCCTGGCAA------------GATTTAGCATTATGGTTACCATCTTTTTCATCTTCCCCTTCCACCCCCAGTTCCCAC------AGTTAATTCAGTCCCTCAGCATTCCTTGCCTGAAAATTGTAATAG-TTTGG-----ATTTCTCCAGTTGTTCTAACTGGTCTACTCTTCAGATTCATGTACAACGATGCCCAACACAAAACCTTTTTATGATTAAGGTCAAACAAATGACCCACATGGTCTACACCTTCAACTCATTTTACCAACCTCACCTCAAAAACgaaatgttgtttttttcttaattctataTTCATTCAGTCAGAAATTTCTCCtgcctttttaataaaatg-----------------------gctCTTCTCACTGATATGCTCCCAGGACAGTGCTGAACCTCATCCATTTCTTCCTTGTATTTT--------TACAGAT----------ATCTGAGATTTCAGCTGTTCTCAATGTTGCCAGGCCATCATTATGTGTTTTGCCTCTTAGGATTATAAAT

a score=50082
s chr3           100745158 3833 + 160039680 CTTCATTTTGTTTCTTCCCGATGCCTCTGGAGACAG--------ACTCATGATTTGTTTACAAATTCAAATTTGCACCTATTCTGTAATTTCTCTTCTCAATTATGTTCTTTAAGTAAACTGTTA-----TTTTTACTTGGTCTTTTAAATTT-TTTATTGTATTTACTTAGCATTACCAATAGCCTAACATCTCTTTTATAGTGTATGTTATGCTTAATTTGATTTGTAAAA-TGTATCCTTTCTAATGTGGGCAATTAAGTTTATTATCTTT------------CTTTGTTTAACTGT-TGGTTTTGTTT-------TGTTTTGTTTCTTTATTT-CATTCTCCCTCCTAGATGTCAGCTATAGGGCAGGATGACAGGCTCAGAGGGGAGGAGCCTACGTTGA----CTTATCTGTGTCTTTTTCGATGACTT----AGAGGAGACTGTGCAAA-TACTCTAGGGCAGGAAGTAGATGGATCAGAGCATGTCTGACCATCCCAATGGCCGCCTCTTTTAGTACAACCCTACCTTCCTAAGCTAA-GTCCCACACCTCTAACTCAGTACTGGTGAGGGTTTAGAAAATATGTGTATGGAATTTTACGAGTCTCCAcaggtgtttgaacacctggcagctatagaacctgtaggaggtagggcctgttagaggaagtaggtcatttgggggcgggtctttggg-gtgtcattatccctggctccttccggtcacactcttttttcctcttggtctggctattttccaaggggctcctgcgtgcttccacccgctggcaccactctgctcacctttcctgccatgatgaactgcatctggctgaaacactgagccaaaaccaactggtcctgcctCTTGGTGCCTAATGGAGCAGGCAATGCATGATCCACAGGGGCACTTTTCTGTGGGCAAAATAATTCAA-----------TAATTTGAC-TCTCCTCTGAAGGGAAATTGGTACCGTGCCAGCCCTCA-CTGTCCTTTGGTGCCTTG---TCCCGGCTGGATCTGTTC----CGTTGGCTACCTTTGTGGACTTTTAAAGTTGGGGGTAAATTAGCTACGGCTGGCGTCTCTCACCCTCTGCACTGTACTCTTTCCCTCGGTTTCTATCCATTTGGTTGTTGTCAC---TAAGGCGATTTTTAGTAGAGGCTGGGCCATTCTTTGATCTGTTGACGTTTGTGGGGAATGCCTTGAT--CCCTGGTTGCCTTGACAATGTCATCTGTTG---ATTTTGT----------TTTTTGTTTTGTTTTTTTTTTTTCCACTAA--------CTTCCTGCCTGTGTCTCTGCTTGCTGGCGGGAG--AGGGGGTTAGAGAAAACAAgtaaatacaaatcactatacgcttgtttccaagcccatagactgcacagtaccca-gagtgaaccatcgtctgagggctt----tgcctggtgatgatggaacttaatagactcaagtatca--cactg---gaacaaatgtaccagtctggtgtgggtgttgata-cagaagaggct----gagcttggggttgggggtatatagTAGTCCCTGCTTGAATCTCCAGGGGCTCTTCCCTGTGTG--CCCTTCTTATCCAGCC-TGTGCGTCACTTTATGTACAGCCCTTTCTCCTAGAGAATAG---TAGAGA-----CTCCTTTTCACCTCTCCTTTTGCTTCAGACCTGACTTCCATCTAGCAGGGACAGTGTGGGTCTTTCCTTCCCTCAGCCT-------CCACGATTTTC--TCATCAA-----CTAGAAACGATTACATTTATGGATCACTTGTATCCCAGTGCCAGGCATTGCAGAGCATGCTG-ATTGGCTGCTGTGTccccccccccgcccccccgccccccccccAGCAGCCTAGTGCAGGGTTACTATCCCATCACATTTTCCAAATAAGAAAACAAAACCTTCCCCCCCCCCCCCCCTGCT---GCAGTGTTGTGATCAAGGCCAGGAC-------CTGT----TCAGCAAGCACTTTTTATTTCTAGCCCAAGGGGGGAA---------AAAGCTGGAGGCAAA----AATATAGTACCTGTAAAGCAACAGTGTGTGTCTCTGTCCCCTGAGAGCCTCTCCTCAGTTATTTGTAACGCGGCCTCTGGAGCTGGCTTCCCTAACTTTACTGATGCAGATTATTCCAGATATTTTCTCTTTCTTTTCTTTCTGGCTTTAAAGATGCTT-GCCCCTCAACATTTCAAAATTTAAAATAATAAAGAAAAAAGTTTTGCCTGTGTTTTAAGTAAAACTAGCATATA-TCACTCCTTTCATCCTTCTTTCTAcctagggctcaccgtgtagcccagcccggcctctgcctcacactcctgcctcagcctcctgagtgctgagattacagcctatgcaacctcaacctgactTGATTCTTAAAAAGTTATTAGCTGCAGAACCAGGAGCAGTCCTGAGTGGCTTTGTCTTCCAGCTACACTTGAAATTGCTTGGTGTCCTTTGC-CGTCTGGAAAC-CTCCTTTATTGCAATTAACTCGGAACCTTCTGCTCCAGCTCAGCGGG-AGCTTTAACGGCTCGCTCACCGGAATGACG-AACAGAAAA-GGCTCATTTACAGAT--GGCTTTTAATAG-CAGTCACAAAGGCCTGGGAGGCAGAGGAAAGATCTACTCTCTTTCTCTACTACCACTTAGTTCTAGGTGACTCTG----GGGATCCA-----TGGGGTTAAAAA-----TTAACCTCTTGTCTCT--AGCT-TCCAGGAAGGCCCGAGGTACTTGTCTACGTTTTCAGATTACCTCCTGAAGAGGAAGGTTTCAAGGAGAAAAGAGACAGTATTTATCAATTGCT-TAGTGGTTCCTATTGAAGTCAGAAacacacacacacacacacacacacacacacacacacgcacacacacgcacacacacaTTTGCTGGT------AGAAGGAGGGCAGGGACCTGAGAGCTGG--CCTGTGctcacccagcaggatgtggaaaaattcagctggcttctttttatagtttcaatcatccctggtaatgaagattctgcaattagaactcagctggcagttatgttggggatgtgtgcagcagactaggatccTGGGTCTGCAGG-GGGCAGGCCTGTCTGTCAGGACGACATGAAGGCGCCCCTAGAACAAGGAGTGCGAAGTGAGGAC-AGAGCTATTTTTGCAGGCCACTTCTTAGCTGTCATCACACCTCAGATAAAGGTCCCGCTTGGGTATGACAACTTTTACATTTTTATTAAGCCACATCCATTTGCAACTATCTGTCAAGATGGAGAGGAATATTATTA--------ACAGAAGGTTAATAAGTCTTTTATCGAGGCACCCCAAAACATGGAGTTTAGGATGATTTCACTGGGCATTGATTAAAATTTGCT------TAGTCTGTGAAGACAGAATTTGTTGAA-AGGTATTCTAAGAGGATTAGCCTAGTTAAGAAGGGAAAGTGTGGGTCAgtcaatgagacagctcactgagtaaaggcacttgctgccaagctaccacagggacccatgtggtggaaataaagaattgacttacccaagccatcctctgatctccacaAGTTCTCTGCAACCCACTCCCAAAGAAATAGAAATTTAAACTAAGTTTTAGAGACGGTAAACTTTTAAAGTACTTAAGCAGaatgaaagactaatttttattgaacacctgctatgtgctaggccctagc-taaatcatttgtatat-tccttatcCACATCCTACTTAG----CTTATTAGGT-GGCACTTTTAGATGCTCTGTTTTATAGGTAA-------------------ATGGTCACATTGCTAAGAAGTGGCAGGTCCCAACATTGAAGCCAG--CCAACTGATTCAACTGTTCCTTCGCTGAAGTATGAGGCAATAAGCTGGTT-TTAGCCAA------CTCATCTGCTTACAAAACAACT--------CTGGCATGGCGTCGCTGTTAGCAACCGGAGCTGTCAGCACTGATTTTTAAA
s HiC_scaffold_1 110719898 3430 - 233722169 cttcactttgtttcttCTTAATGCCTTGTGAAATAGTTCCTCAAACCTCTCTGTGGTTCACAAATTCAcatttgtactcattctgttatttctctcaGCAATTAAGTTCCTTTATTAAACTGCTACATTTTTcctatttggtatttttatttaacttatggTATTCACTCAATGTTAACAATATCTTATC-TCTCTGGAATAATTTATCTTATGATTATTTCAacctttaaaaatgtgttctatCTAGTATGGGCAACTAAGTTTATTAACTTCAATTAGTGGTTGCATTCATCAATTGTCTGatagtgtgtgtgcacatgtgtgtgtgctatACATACATTTCCTCTTCTTGCATACAGCTATTTTGCAA-ATATTGGGATTAAAGAAAGGAAGCCTAAATTCAGATTCCCATTTGTGTCAGTCCTGCTGATTTTAAGAGATGAGGATGGGCAGGGCACTCCAGGCTAGAAAACCAGTGGCT-------GGTTTGACCACcatgattgttttctcttccgAAGGCAACCTTCCCCCATACTGTAACGTCCC---CCTATACCTTGGTATTT-------TTTAG--------------GCATTTTACTTGC---------------------------------------TAGACAGTAAGGC-------AGAAAGAAGG-------------GATATCCAggtatttcattgcttttattactATCC------ACTCAGTCTCCCTCACAGT------AGTCTTCTAGAATC----ACATAATTTTAATAGGTGGCCCC-------------------------tgaactggccttg------------------aattcattttttctATCTCTCAGTAA-TGGTGGAATGGGCAATG----GTCCACGCAGGCAGTTTTCTATGGACAAAATCGTTCaaagtttttcttctatttttacgTTTCCTATGAAGAGAAGTTGGCCTCTCGTCAACTAAAAACCATCATTTGGAGGCTTGCAGTCTCAGCTGGATCTGTTCGATATGTTGGA-------ATGTTCTCCTAAGGCTGGGTATTTATGAGTAATCAATGAATTCCCTGGCCCCTGAAACTGT--------CCTCTGCTTCCATCTGGGTAGCTGCTGACAACAATAAGGTAAATTTACTTGGTTGCCC--CTATTCTTTGACATTTTGAAGTTCATGGG-AATGCCTTTGTAACCCGATTTTGGCTGAAGATGTCATCTGTAGGAGATTGAATGAGGACCTCATtcttgctaggcagacacttgtatcactgagctagaTGTTTGGTTGCTGTGTCTCT-TTTGTGGGGAGAAGCAAAAAGATTTTTTAGTATATCCAAGCACAAATCATTATACATTTGTCT---AAACCATATaatgctcaaaaatcaagaaTGAAT--TCTAATGCAGACTACACATGCTGGGTGATAAT---------------TCTGTATCAATCACTGACTGAACAAACCTACTACTCTGGTAGGGGTGTTGATAATGGGAGAGGCTTTCCATATGTGGGGCGGATGAGAAAT--------CAACTGGTTTCTTTAAGG-CTCCTTACTGTGTGTCCCCTTCTTAAGCAACCCTATTTCTCATTTCATGTACAACCTTTCCTCTTggagagaagaggcagagaaagcCTTCTTGTCTGACTCTCCCAATCTTTCA---------TTCACC---CAAGACTACTTTATGTCTCACCTCCTCCAaggtttcttttcccatgcttctcCTTTGTCaatatttcattaaagaattatgtttcttgaacatttttat--------------gtGCAACATATGTtacatttaatcct------------------------cacaatctCAACAAGCTACT--AAAATTGCCATCCTACC-----ttataaatgggaaaataaaagctCAGTCCAATATAACACGGACAAGGTAACATAGTGA-CAAAACCAGGATAGTTTCATTGTGCCTTCAGAGATCATTTTTTATATAGTATCTcaggtagacttttttttttgtagtgggacTCAAACTCAAACCTCTCGCTTattaggcaggcacttgtg-------ccactgagctacattcccaggctcCCTA---------CCCTA----TAGCTTTCTTTAATTTACTCATGTGCACTCTTACaaacatta-ctttttctttt-tttctagatatcCAAACACATAGCCCATGTacat-----aaactgaaata------------ttttttcataaattttatgtaaaatttgcaAAAAATCACTCCCTTGATTCTCT--------------------------------------------------------------------------------------------------------------------AAGTTATTTGCTACAGAACAAGATAGTGTCTTACCTAGTTTTGCCTTCCAACTAGATTTTTAATTCCTTGGTGTCCTTTTCGCTTCTGGATATTCTCCTTTACCACAATTAACTCAATACTAACCACAC------AGCAGGTAACTTAGGATGTTCACTGATAGAACAAATGTAACAGAAAAAGGCTGATTTGCAGCCTGGGGTTACAACAGGTTGTTGCAAAGGCCTACGGGGTCTGGGAGAAATGT----CTGATATCTATGGTCACTCACTTCTAGGTGACTTTGTAAGAGGAACTAAATAAGGAGGTTAAGAAATGATTGAATCTCCTGCTTCTGCAGCTGTAGAGGAAGGCCAGACATATTTGTCACGGTCACCATCCTACCTCCCAGGGAGGGAGTTTTGGAGGAGAAGGGAGATAACATCTATCAATTGCTCTGGAGCTTTCTGCAGAAGCCAGA-----------------------------------------CCACACATGTAGAAAGGATAACTGGTGAATGAAGGAGGAGGGCAGGAACAGGAGAGCCAGGCCTTGTGCTCACCCAGCAGGATGT-GAAAAATTCAGCTGGGTTCTTTTTATAGTTTCAATCATCCCTGGTAATGAAGGTTCTGCAATTAGAACTCAGCTGGCGGTTGTGTTGGGGATGTGTGAGGCAGAATAGAATCCTGGGTCTGCAGGAGGGCAGGCCTGTTTGTCAGGAAGACTTGAAGGCACCCTTGGGAACAGTGATGTGATGTGAGGACGAGAGCTATTTTTACAGACTATTTCCTAGCCGTAATCATGCCTTAAATAA--GTTCCACCTGGCCATTACAAGTTTTACCTTTTATTCCAACCCATTCAGTTCTCAATTATCTGTACAAATGAAGAGAAGTGTTAATACAGATAACACAAAACACGGACACCTCATTTATTTAGGCTATCACGAGTACGGAATTTAG---AATTTCATCTGGGCTTGTTTGAAGTTTACTTATATATATGCTATAAAGAGAACATTTGCTAAAGAAATATTCTAGGTGGATTAGCCAACTTCATAAAG----------------------------------------------TGC-----------------------------------------------------------------------------------------------------------------------------------------TTTCAGATCCTTAAGCAGAATGATAAGTAAATGTTCACTGATCGATTATTATGTATTAGGCACTGTCTTACATCTTTTACATATATGATTATCCACAATTTGCTTAGTAACTTTGTTGGATAAGCACCATTATGAGCCCCA-TTTATAGGTAAGGAAGTGGGCCTCGTGTCCAAGGTCACATCCTTAGGAAGTAGCAGATCCTGGCTCTCCACCCAGGCACACCTGACTCA----CTCCTGCCCTCAAGCATGAAGCACTAAACTGATTACTGGATAATGTAGCCTCCTCTAATCACAGAATACCTCCAGTTGCCTTGTATGGCATCACTGTCAACAGTTGAAGCTGtcattattgctttttaaa

a score=36646
s chr3           100755724 1399 + 160039680 GTGTGTTGGCTGAACAAGAAAAATGAA--TGAAATCACAGTACTGTGCCTACTTTGGGTTGCTCACTGCAAGCTAGAAGCCATGCAGGGTGGGATGGTTGACCTTGCTGGCCTCTT-GCCTCAACACACACACCTT--------------------------------------------------ACTGGGA------GCAGCTGA--------------TGTTGAATGGGGGTTGGGGGTAG--TGACATAGGCAGTGCATTGGGTAGTGTGTGTCTTGC-------------AGCACCCTCTCTGAAGAAAGCCCTAGAGTGGGGCATGACATCA----CCCTCCCATGCCCACCCACAGCCCTGGCTGTGGCCTGGGGAAAGGCTT----TATTCTACAACCTTGGAC-----------------------------TCAGACTC--AGAAACTCAAACTTTGATTGGCAGCTATGAATCCAAATTCACTTGGCAAACTTATTTCTAAGAGAAGCGGTCCTTTGAGAATTTCTCCG-GCTTGGTGGTTACCATCTATTTCAGTGCTTCTAAGC---------------TGTTGAAAATGGCTCACTGGACTGAGTTACACTGAATTATGTGTGGCTCTGCTTTCTGATTTCCTAAAGTGAGAAATTGAGGAAGAAGTTACATTAATGACCTTCTTTCTTCCTGAAGGTTCAATCAAATGATAGGAGAGCAATCTGCATAGTAATTAAAACCCCCTTCCAAGTGAGTCCCTGTGCCTCAACGGAGGAGAGCATAGAAGTTGTATCTGTAATGAAACTCAGACCCA-TCACCTCTAAATCATGGGGAGGTTAATTCAGCCTGTGCAGTCACAATCAGAAGGAACATGATATATAGC--AATGGTCATGGGGACAGGCTCACATTGTTCCCAACAGTGGAGGGTAATGGGAAATAAGCTGTCACTTGAGACAAGGCTTATGCTGGCAGCTGCCTCCATCTGGGACGGCGTGGTAGGT--CCCATG-----ATCACTCGAAGTTATGAatatatatatatacacacatatatatatacacatatatgtatatacacacacacactaatacacacacacatacacacacatatatatatatatCAGAGCAGAAAATATAATGTACAAAGTTTTTGCCTTAAATCCTCAAATCAAAAGATT--TTATGA------CTAATGGCACTGAC-----AAGTCATACTTTGGAGGAGTTGGAAGTGGTCAGAAGGAGATGTATATATCCCTAACCTTTTAGAAATGTCTGCCCATAGTCCCCAATAGGTG--TCTGTTAGCTATAGGTGATACTGGGCAGGTCAGTGTCAGGGGATGGGTGGGTGGGAGGGATAGTTTTATGACTAGA-GTGGCATTCCCCAAGTTCTTACTG------TCCAAAGGGATCATATGAAGTCTTTATTTTATGAGATAAAAAACCATTTACCCTTTAAAGATTAAATAAATCTTATTTACTCTTTGGGAAGCTGATGTTAGCCAAAGACCTATAACCTGAAATCTCCTACTGGCCAGTATC
s HiC_scaffold_1 110726969 1451 - 233722169 gtgttttggGTAAGGAGGGGTAAGGAGACTGGAATGGAATCACTGTATTCAGTTTGGGT----CACTGTGAGCTAAAGACCATG----GTGCCGGAGTTGGCCTGGAAAGTTTCTTTAATTCAACAAACTTACCTTGTGATGGTAAGATAATCCTTAAAGAATGAAATGTTAGTCGTAttcctgtcactgtgacaaaatgcaacttgaagaaaaatttatttgctGAGTGGGCACTGGGTTCAGAATGACGTGGACAGCACATTGGAAAGCACATCACTTGCTGATGCAAACTTCAGTTCACTTTGTGAAGAGAGCCACAGA-TGATACATAGATTTGGGGCTGCTTCAGTACCCACCTGCAACCCTAACCATGCGCTGCAGAAAGGCCTCCTCTGCTTCACGCCACTGGATAGATGACAAGAAATATGAATTTGCTGGAATAGAACTCTGAGGAACAGACACCTTGAATGGCAGCTGTGGACCcagcttcacttggagaactTATAACCA-GACCATGGATCTTCTGAGAATTTCTTTAAGCTCTGTGGTTGCAATCCATTTCAGAGCTTCTGTGCAGTATTTATACTTGCTGTGGAGAGTGGCTCAGTG----------TGCTGAATTACGTGTGACTCTGCTTCCAGGTTTCCTAAAATGAGAAATTGAGGAAGAAGTTACATTAATGACCTTCTTTCTTCCTGAAGGCTCAATCAAATGATAGGAAAGTAATCTGCATAGTAATTATAGTACCTCTCCAAGTGAATTCCTGTGCTTCAGTGGAGAAGAGTGTAGAACTCATATCTATAATGAAATTCAGATCCATTTGCTTCTAAATCATAGGGAGGTTAATTCAGGGTTTGTAGGCATAATCAGAA-GCACATAATATATAACATACTGGCCATTGGGACA-GCTCACACTGTTTTCAACAGTGGAGGGCAACAGGAAATAAGCTGTCACCTG-GACAAGGCTTGCACTGACAGGCAACTCACCCtgggcctgcttggcaagtactcTATGAGAGTACCACTGACAATTCTGAAT-----------------------------------TTTGAATGGAAGTcctgccttttccaga---------------------------atgtgaCTAGAAAATGTAATGATCAGGATTCTTGACTTAAATTCTCAaatcaaaaaattaattataagagTAGTAGATGACACTGATGCGAAGGGTCACACTTTGAGAAAGT--GAAGGGGACTTAGGGAGAAGGCCATATCCTCAAACTCTGGAGAATGCCTGCTCACAGAGCTCCACTGGTAGTTTTGTCATCAGAATGTGATCC-----------------------------GAGGGGAGATTTATCTCATGACTGCACATAGCATTCCTCATATTCTTATTGATTGGCTCCagttaaattaaattaagctTTTACTTT-tgagattaaataattttaaccttttaaagaaaacataaata--atttgatCATCAGGGTTCTACTCT----CAAAGACTTATCACGTGTGCTTTCCCAGTCACCAATACC

a score=16802
s chr3           100767662 753 + 160039680 AGGCCTTTGAAATCCTTTTCAACTCGAAACTATTTGATTAAGATTAAGTCTATTATCAACTGAAAAGG----------CATTCATTCCTCAGGCTGCCATAGTGG-----------------------TTTCTAATGCG-------ATCTTTCTTCTTGAGTTCACCCCTC-AGAGTCTACAGTCACATGGCTCCCTGGAGTGTTTTGCAGAGTGACATCTTAGCCCTTAGGATACTACTTCAAAAAAA------AAAAAATCATTGATCTAGAACTACAGAATCTATCTCCCTAGGAATTCACAGTGC----TA-----TTTAAAACTCTTAGTACTTTTTTTTTGGGGGGGGGGGGAGTACGTGTGTAACTTTTTTTACTTCATGGTTTTACAAG----------------------------------------TGATACATCTGGGACCAACTGTGTTAATAATTTCCCTACAGTCTGAATGGTAAATAGATGTCACGATGGTCCTGCTGTGAACGTA---------CAATGATGCCATGTTTACTTATCCC-CCTTCTTGGTGTCACTTACTGACC---GAAAAGTGATCGTTAGGGTGAGATAT----------------TAGT------ATTAATTCCCACCCCAGTGTTGTCAACAGCTATAAAAGATTCCTTCCAGTTGACCAGAAGAGGGAAGCAGAGGACCTAA---GATGGCACATGAAATCCCTA-AAGTGAGTTTGGAATAAACACA----GAAACACTGAGTCTGGAGGCTTCTCTTGGATTG---TCCTTTGACAGAGCGATCCATACACAGTTCAA--ATGTCATCTCGGGAAC---AAGCCCCTCGCTGTTGTCAAAAGCAGGCACTTC----AGACCGTTCATTA
s HiC_scaffold_1 110735541 883 - 233722169 AAACCTTTGGGATTTTTTCCAACTCCAAGTTTTGTgattaaaattaagtttaatattaacttaaaaagaattggAGCTCATTTGTTCCCTTGGTCATGATGTTGGGTTGGGTGAAGTGTTACCTTTCTTTTCCAATGTGCAAAGTGATCTTTCCATTTTAGTTCACTTCTCCAGTTTCTAGTGTCCTATTTCTCCC-AGAGTGTTCTGTAGGACGATATGCTAGTCCTTGGGGTACTtctaaaagaaaactcacaaaagagTCATTGATCAAAAACTATTGGCTGTTTCCCCAAAGGGGATTCTAGGGCACATTAGAAGTTTTAAAACACTAagtgattttttaataaaaa-------aaaatttgtgtaatttattttacctcaaaaatttccaaacatttttaGTCAAAAAACTTTCTGCAAAAACGTACATTGATAACACATTTGAGAACTGTTAGTTTAATACCTTCCCTTTAGTTTGTAC----AATCGATGTCATAATTGCATTTGTGTGAACTTAATTAAAATGTGACGATATTGTCTTCAGTTAACCCACTTTCTGGGTATAACTTTTTGAGCATTGAAAAGTGATTGTTAGG---AAATATAATTTGGCTCAATGACTAGTTAACcaattaacttcttttcctaaacTCTAAATGGCTGTAAA-GATTCCTTTCAGTTGACCAGAAGAGGGAAGCAGAGGACCTGAGATGATGGCATGTGAAACCCCTGTAAGTGACTTAGGCGCAAACCTAAGATAAGGCAACAGGTCTAAAAACTTGCCTTGGAGAGACCACCTTTCAAGCAGTGATCTGTTCACGTTTCAACCACATCACCTTCCAAATGTGAGGCCCC-----ATTGTTGGAAGCCATCACATCCAGAAGAACGATCAGTA

a score=8671
s chr3           100777461 370 + 160039680 CCTTTTCTATGTCTTTAAGATGGAGAGATGAGC-TAAAGATGTTGTTGGCCCCAAGAGTCTTTTTGATGCTATTGCTTGCAAGTCAGTTTTCAC----AAGAGTGG------------ATCTTCTAGATGTAGACAAGGGAATAAAATGATCAGATAAGCAAACAACCCATGCAGGCTCAGGTTCTCAGCAGCTGGATTCCATGGACTGAGCTCAGTACAGAGCAATCGCTAGGGTTCCCGCTGCCA---TTCTGAATGGCAGA-CTTCCCTTTTCATCAGTTCAGGGGTCAGGGCAGAGCCTGGCCCTTTGTTTGGAAGCCATAATAGGAACTACTGAAAACATTCATTACCAGAGCAAACCCCACAGTGCAGACACATCTCTGGGAACT
s HiC_scaffold_1 110752847 357 - 233722169 CTCTTTTCATAGCTATAGAAAGGAGACATTAGGGTGGTGTTATTGTCAGATCTAAGGTTCTT-------CTATTGCTTGTAAATCAATTTTCACCATGGAGAATGGTTTTGGGAACATATTTTCCACAGGTCAAT--GGGTACAAAA-------------GAACAACTCTGACAGGCTTAGGTTACTAGTAACTTGAGGCCATAGGTCCAGCCTAGTAAAGAGCAGTTGGCTTGACACACACTGCCACCATTTTGATTACCAGAACATTCCTTT----------AGGTGTCAGATCAAGGCTTGGCTCT--ATTTAGAAAACATAATAGATGCTACTGAAAAGATTCTTCACCAGAGTATACATTTCACTCCAACAATACCTTTGGGAAct

a score=37384
s chr3           100779984 1603 + 160039680 ACTCTGTATGTGACTCTGTCATCTCTATTTCATACCTGAGGAGATAGAA--ACAGAGTGGGCAAGCA-TCTGGCCACAGAAA-TAATTGAT-GTGTTAG--TCTAAGGCAGCTTGGTTGGCTCCAGCAAATATACACAGCCACTCTGCTGTGTCCTGTTGATTAATTGATAGAATGAACAAATAAATGGGCATGTG-TGCTAAAGAAGGAAAACAGAGTATTCTGACTAAGGCTCTAATAAGTGGAAGAATCAATGAACCAGTAAAACTCATTCCAGAGCATTCTGTTTAATCAAGGTTTTACAAGTTATCTTTCATTGCAAGGTAATGGGCTGTTTACACTCAGTGCCTTCCAAATGCTGAAGAGGCTCTGATGTTAACAGTTGTTGATAAGTGACTTGGAAAAGCTGAACATTTTAATTTAAAACAAGTGAAAGAATTCATTGCCAGCGAATTAAAAAGAGTCATCTGCTGTTTCTCTGCCTCTTCGCTCTCCTGCCGTTCACCCAGAACAATAACAGGGGTGTGGCAAACTCAGCCACAACTGTCTACCTGTGCCTTTCCAAGATGCCTGCTTTGGCAGTTTGTGGAATGA---TTTCTGGGCT-------------TCAGAAATATGGGAAAGATGCCTGTAGTTCACAGTCAGCTCTG--CCCTAATGACTGAAGGAACTCCTTGGTCAGTGGAAAGAG------------------TCCTAAAA-GGAAGAACTAGATGTCATTA--------------------TGTGTCCTCCACATAGGGCAGAGTG----TCACATAGTAGAAGCTTTACATGAGTCATATTTTTTTTTTGCCAGCTTAATAGATTTTTCCCTTTTCCCATCTCTACCTCACACCCTCCCCCTCTTCTCCCCTCACCTCTGGTACCGGGAATTGAGCTCAGGGTCCCATGTATGCT--ATTCATACTTT----CTGAATCAGAACCCCTAGATGGTCTAAAAT--AAGTTCTAAGAAGCATAAATACTCTTTGAT------------GATTAAAATAATAC-------------------------------------------------------------------------------------------AGAGTCTGAGAACTAAACATACCTATGTCAGCACTATGTCTTTAGAATAAGAAGAATTTTATAAATCTGAAGTGAAGAGAACATAGCACACTTCTCTTTTGTACTCTCTCTAACCTTAAAGTACAACTCAGGATTGGTTTTATGGGCATGTGAAATGTGTACACATGCTTAAATGACATTTTTGTGGATCAGGAGGAAATGAATAGAATCACGGCCATAGTGTGTCTGAATGTGGCTTCCTGG-AGGCTG-GGGATGGTTTCTCTATGCACAATTGAGTTCAGAGGTTATCTACACATAAACATCTCTTCATGGGAGCTAAGAAGAAAGTCCCTGCAGAAAAAGCATACACTAGCCTACTTGATGGAACAGACAACACACTTGGAGGCCTAGGAAAAGAGAAGCATGTTGAAATTAATAACAGTACCGGCTGTCTGAT-------GGTGTTAACAGAGAGAGCATAGACCA--AGCCACTGAGACCCACCACTGTGGTGGAATTAGAAACATACCTCGTTAAAATCTGGAGTGGAATCATACCAGCACTAAAGTTCACTAACTTCTCACAGAATGAAGACAACAGCACCATGCTCAGTTTGTATCCAGTCATAAGTGTTAACACATTTTAAAATATTTTTCATGAAACTTTG
s HiC_scaffold_1 110772562 1649 - 233722169 ATCCTCTAAGTGCTGTCactatctccattttacagatgaggaaacagaatcCCAGAAAGGGTAAACGGTCTACACGAGGAAAGTAAGTGAGAGAGCTGGAATTGAATCCAGACAATTTGGCTTCTGTAAGTACACTT-GCTACTCTGTTATCT-----TGACCAATTGatagaatgaagaaatgaatgggTATATTCtgccagaaaagaaaa---gaggcctcTAGCGAAATC-CAAGTAAGTAGAAGAATCAATAAACCAGTCAAGCTCATTCCCAGAGAGTCTGCTTAATCAAGGTTTTACAATTTATCCTTCATTGCAAAATAATGGGCTGTTTATACTCAGAGCCTTCCTACCGCTG--GAGACACTGACATTAACAGTTGTTGATAAGTGACTGGGAaaagctgaacattttaatttaaagaaagtgaaagaatt-aTTGCCAGTAAATTAAAAGATGTCATGTACCATTTCTCTGCCTCCTTGATCTTCTGCTTTCTGCCCAGAACAATAACAAGGCCCTGGTAAGCTCAACCATGActacttacttttccttttccaat-ttcCTGGTTCTGCTGCTTACAAAGTAATCTTCTCTATGCTTGTATTGGTAGACTTGGAAATGTAGGAGAGAATTTTGCAGTCCATAAACATCTCTGTTCCTTAAAACATTAATAGAATCCCTCTACTGAGAGAAGAGCTGAAGAATAGATCATGCTCCTGGAGTGGAAGATCTAAATTTTACTCTGTTTGTGTCTTTGTGTCTTTGTGTCTTCAGCAGCTGGCAGACTGGTTAGCACAGAGCAGAAGGTTTacaaaggcca---gcctggtctgccAGGTTAGTGGA-------------------------CAAAATAT------------------TCTTttgtgctggagactgaacccagggctttgtgtatGCTAAACAcatactttaccactgagcctcA--CCCTAGTCCTTAGAAATTTGAAGTTCTGTGGAAAACAAGTATTCTTTGGTTgacattttctaaataaaaatatcacttatTCAGCAAGTGAATCCTAAGTATTTACTATGTGCAAAGAACAATGGGCAAAGTACAGGTGAGAACAACACTCACGTTCCATGATACTTAGAGTCTGAGACATGTGCACTCATGGGTCAACACTGTGAGGTTAGA--GAAGAGAATTTTGTAAATTCAAAGTGAATGAAAAACAGTGGCTCTGTCCTTTGT------------CTTAAAGTACAGCTGAGGAATAATTTTGTGGGTATGCAAAATTCTCATGTGTGGTTAAACTGCATTTTTGTGGCACGTGTGG-------------TACTTCCTTAATGTAACTGAATGTGATTTCTCAGCACGCAGTGGGTTGGTTTCTCAGTGCACACTTGAGGCTAG-----ATCTGCAGATAAGCACCAGCTTAT--GAAGTAAGAAGAaaatttctagagaaaaaaaat--gttaaccaCTTAGACTGAACCAATGACAAATCTGGGGAGACGGGAGAAAATAGGAGTCTTTAAATTAACAGTGGTGATGGCTGCCTGATCCTTTACGATTTTAACTGAAAGGGTACACAGCACTAGGTACCGAGACACAGCACTTTGGTAG--TTAG----CTAACTCTTCAAAATTGGGAAT--------------------ATTCAC--ACTTCTGTCA------------------TATTCTCACTTTGT-TCTAACCAGAAATATTAATACTTCATTGGttcttttttatgaatttttg

a score=13337
s chr3           100789885 1003 + 160039680 TGCTCAGATGGTGGTGGAAGAAGCTAAGTTAAAGAACAGATTACAGGATTTTGATGCTAGCTGGCTTGCCTCTCTGGATTATACC-ATTTTCTTTCA--TTGGTTTCATGTCCAGGAGGGATTTGCTTTGCTGATGCCTCCTCTCT-CATCTTTTCTGCC---------CTCTTCT---CTTTTCCTAGTTCAAAGTACGTGCCACCTCCT------TCAAGCTAGTGCCCTGAAACATTACAGTGTGACCACATGCT--CTTGTTCTCAGCTTTCCTGTGTCATAAGAAATTCCTATTCATGCAAAAAAAGAACTTATGGGCAAAGGTCTCTAAGCATAGAGACCGACAGACATCAGAAAGATGATTCCATG----CAACATTTATTAAGCTGTTCTCCAAAAATGCTAGGTGCATGACTAAGCGGGTCTCCAAGGCACTGAGGG---AGCAGAGTGGCTG----TCTCAGCACCTCCCCTAGTGT--CGTCCCCACATGAAGAGTCATTTAACAGTTGGAACTCCGTCTATGATCTCTAGATC-------ACCAC-----------------GAGATAGTTTCCTTCCTTATGTTGTCCAAAACGGTGCC-TGAGTTAATTCCTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCG------------------------------TTTATAAACACCACTGGTTCAATATGGAGCTGGACAGGCAGCATTTAGGACCCACAGGGAACTTTCAGGACACCTGCGGCATACAGAATAAATGACAGACAGAAAGGAAGCAGAAGCAATTGCATTATGTTTTTAGGCAAAACG-GGGCATTGGACCAGAAAATCTTCAAAA-------------------TTTATGGTTTCTGGGCAGATGAGAACAATTTCAGGTGAATTGTGGAAGAAATAAGTTGAAGGGTCCCCCCCCCCCCTTACAAATAAGTAGAGCAACGTAGTAACAAAGCTTAAAAAGGAAATCTCAAAAGCTGTCCCTGAAGCTTTGGGAGTGGCATAGCCTCCTTTTT-------CTCGCTCACTAAGGAATGGCACTTGGGTGGGACCTCCAGTATCACTTAGCAAATGGTCTG-----------TCTCTTCCATCCCTTCAGGACAGAGGCCACAG
s HiC_scaffold_1 110788105 1244 - 233722169 TATTCAGATAAAGGTGGAAGTGATCTGGCTGAAGAGCAAATTAatgtgttcaatctccagctattttattattctagttctcacttgttttctttcagactgcatccatttatataagaaatttgCTATTCTGCTACTTCCTCCCTTCACCTTCACCACCTGGTGAGGACTCTCCTTACCTTTTCCTAGATAGAAGTATCTGTGTTCCCCTAGAACTGCAAGTCAACCCCTCCCCAAATAACTTTCCTGTTATGGGTTTGCTTGTTCGTAGTTTTGCC---TCATATGAAATTTCCATTCATG--GAAAGAGAATTTTTGGGCAGAGACT---------------------ATCTCATAAAGAGGCCTCTATGTGCTCAAC--TTACTGAGTTAGTTTCCAAAAGCATGAGATgcaaaaataagtatgttttcaagGTACCAGGAGTCTGGCAGTTCAGCTACAGTTTTTAGGTGCTtctcttgtttactttttctacATAAATAA---------AGTTG--------TCTGTGGCCTTTTAGTTTCACCCTACcactttataaaacttttttggACATTTTTTTCCATCTTACATTATCCAAAAAGATGCCAtatattaattcttcctttcttgtttttccccCTTTGTTTGGCggaagatttattttatgttgatgTGCACTGGCAGGGAATCAATTATCCCTTAAAATATCAGTCCTCAAAGGCTCAGGAAAGGAAACTTTTATGGGATTTGCTAGCAAGAGGTAAGAGTACTTGgctattttgattggttcttacaatatgcatcgcAGTGACCATATGTGAATTCTTGTTGCAGTTTTATAAACAAAGATGGTACAGTACAGAACTTAATAGGCTGTATTTAGAGCCCAAAGAAAGCTTTCAGAACAT-TGTGAcatacagaatttataaaaaagataaaa----ctgaaatGATTTGATTGCATTTGTAGGTAAGATGAGGGTACTGGACAAGATGATCTCCAAAGGTTCTCCCAGTCCTGAAAGTTTATGGTTTCTGGATGGACAAGAACAATTTCAGGTAAATTGTGAGACAGATGAATTA------------TTCTTTACACGAGTAAATAAAACAGTGTGGTAACAAAtctcacaaagaaaaattttaaaa-tggtcatCATGCTCTATTA--TGTTTAGTTACACTTTTGTAGGAGTTTGCTTACTAAGAAATGCCAC-AGTGTGAGGTTTCAAGTATAAATTGATAAATGTTATGTGCATTTATGATCTCTGCCTTCACTTTAGGACAAAGACCATAG

a score=35122
s chr3           100791634 1685 + 160039680 GGCTGGAATTAAAAGATGTCTTTGTTTAAATCATCAGGGATATGTGGTTAGGTTATCAGGCTAGAATCCCAGTGTCTGTTTAACCATAGCC-----ATACAAGAATCATTTAAATTTCTTTCGTCTTTACATACTTAGGTTAATTTATAATGTCTTGAAAGAA--ATCTATTCCCCATTCCC---TTTGTGGTTGAGGATCTGCCATCCCCAGCCCAGCAGTAGAAGCTGATCTATCTCCTGGGGTGAAGTTTGTGGTCAGAGATGACTAATCAGGCGGCTGCAGCCACTCATAGTTCACACAAAGTGTGTATCTACATAAA-AAGGCAAAGTTTAATAAAACTCCAAAACAAGGAATGATTGCTCTGAAAGATGGAGCTCTACAAGCCAGCTCTCTCTACTCCTGTTGCAAATGTGCTATAAATTGATTATCCATAAGACGTGGCTTGACTATGCATTGATTTAGAAT---GTCTTGCGATCCTGATTGAGCACCCAAAGGATTTGTTTTGTCCTTCATTGTGATTAGTAGATGGTTTTATGTTCCTCAATTATGATAAATTTGTTTTTGAAACTCATTATAATATTTAAATTGATCATTATCACAAATGGGTGTCAGTGCTTGGCTGTCAGTATTTTTCTTTGGGAAGAAATGAATAAACTAAAATTATGAAATTAATAACCTTTGAGTTTCTACTTTAACTACAGCAAGAGGAAAAAACAGAAAATGATTAAGTATATTTTGAACCAAATGTGAACTCAAtcatttattcaataaacatttgttgagtatcaaccattgggctaagtgctttgaagggcgtgatggagagtaaatcacatttcctgcattcatggaagttataaatgggaggaaataagacagatgaataaataactgtaataaaagtaaagtgaacacaagcctc---agatgacagaatgctttgggaatcaaggggg---atgggtacAAGTTCAGCC-AAGAAAGAAAAAATGCCAGAGAAGTCGGT------------------------------------GTGTGATCTATGGGGTG--GAGAGTCCAGCTCCAGAGGGGA------AGAGAGCCGTGGATGGCTTTAGGAAGGAGATGTGGCATGGGTTCGCTGTGTTATGGGTTGCTGTGTTGTGGAGAAAGCACAGGCTTTGCTTAGTGCAGTAGCAGCGGAGGTGGCTTAAATGATGTCTGAAAGTTGAGCCAGGTATAAGACTGCAAATGCAGGCAAAGCTC-CAGATTTGAAAGTTGTTCAGGAAGCAGAATCAGCCAACCTTGGGGATC-TGTAGAAAT--GAGGCGGAGGCACAGATGGGAGGA--------------------------AAAA------------AAAAAGCCCAAGAA-----------------------CTCAGGCTTACAGTGTGCAGAGTGCCAGTCACACTCAGTGCAGAGCATGGGATTCTGAACATATAGTGTCGCTGGAGGGTCTGGACACGGGCTTTCCCCCTGACTGTGG-ACATTTGCTATACCTGAGGA-GCGCTGCAGTGGAAACAGAGGTCACCAAGACAGTGTTAATAGAAC-AGAGGTGCCTGAAGTTGTCCCTTTGTGAATCTTCTGTAGCCAGGGGCCAGGAAAAAGAGGAGAATCCTGAGGCAAAGCTCC-TACTGTGAGCTATGAA-AGTCTCTATTCTCTCAACAAAGATTTTTGGAACTTACATTCTAGTGCAAAATTATGTACACATTTGACAAATGAACATATGAATAAATGTTATCAATTTTTATAAGCCAAAGT
s HiC_scaffold_1 110789448 1690 - 233722169 ggcagaaattaaaa-atgtgtttgcttAAACCATCAAGATTATACAGCTATTTCATATAAATACAA-------GTATATATAAATGTGTTCTAAATGTATAAGGAGcactaaattttgttttgtatct---tttataGCATGATCT------TCTAGAAAAAATAACTGAATCCTCATTCTCAGCTGTGAGTGTTTGGAACTATTTCCCCCAGTCCAGTGGCACCAACAGAGCTGCCATGATGGG-AAAGTTTGTGG-CAGGGATCAC--AGCAAGGGTTTGTAGCTATGTACAGAACATCCAAACTTCACATGTGCTGAACTGAAGCAAAATATTTCTCAACTGGAGAACAGAGAAAAAGTAC------AGATGAGT--------GACAattct---tatttctatttaaaatatactgcaaattAAATATGCACACAAAGCTGCTCATCTTCATGTTCATTTAAAATCCTGTTCTTTGACGGTGATTGAAGACTCAGAGG--TTTTTTTGTTCCTTGTTATGATTAGTAAGTGGTTTTATCACCCTGTAttataataaatttgttttgGAAGTCGATTATAATATCTAAATTGATCATTATCACAAATGGGTATCAGTGTTtggct----gtatttttcttttagcaGAAAAGATTGAACTAAATTT---GAACTAATattttgtgggtttcttttttaactacataaagag--aaaaacatggaaTTATACAGTATATTTTGAACCAAATATGAACTCAATCATTCATTTTACGAATGTTTATTGAGTATCGACTACTGGACTAAGTGCTTTGAAGTATACAATGCTGAATAAATCACAATTTCTGCGTTCATTTAActcataaatttaagaaaataagacatataaGTAAATAACTGtgcaacaaataaaattaatagatgtCTCACAAGATGATAGAGTTCTTTGTGCTTCAAAGGATGCCACGGTCACA--TTGAGCTGAATCAAGATAAGTTTCCAGAGAAAGTGATACATATTGTACTTGTAGATTGACCCATCCTGGAAAGGTAGGATCTAAAGACTGATGAAAGTGTA-CCCcagatggaagaaaatggaaaatcactgatGGTTTTAGAAAGAGAA----ACATGGGTTACTTGTGT----GGTTTCAGAAATCTGACAAA---------TATGCT-----CCATGGCTATTGCAATGATTCAAATGAAGTCTTAA----GAGCTGGGTGAGAGACTGCAAGTGTGAGCAGAGCACAAAGATGTGAACGATGCTAAGGAGACAAAATCAAAACACCTCGGGAATTGTTTAAAAACAAGAGGTGGAGACACAGATTTGAAAATCAGCCAAGATCATTACTGAAACCTGAAAATAATGGTTCTCTAAGCAGCCCAAAAATTACCAGCTTATTTAAATCAGACTTCAGACTCACTGTATGGAGAGAA------AGATTTAATGTTAAACCtaggaatctgtattttaaaaagcaccaGAAAGTATGTA---------------TGAAGGTGGTGCACTGGTCATATTTTGGGATACACTGCTACAGAAACGTAAGTCACCAAGAGAATTTGCAAAGAACAAGAAGTGCCTGAGGATGGC----TATGAATCCCTTACGTTCAGGAGTTGAG-----GAGTAAAATCTTTATCCTATGTTCCATAATATGGCCTTTGGACAAACACCTTTC-------------TTTTGGGGCCTATATTATAATGGAAAAATG---ATACATACAATAGACAAActtat---taaattct---tatttttttgagatagagt

a score=25166
s chr3           100805567 825 + 160039680 gtgtgggAATGGACATATCTAACAGCTCAGAATCTCATCACCGAGTAAGTCTGAGCTGCCAGGTTGCTGGCGACTACACTGATATCTGGAAATGCTGCATTTTATAACCCATGGATGGATCTGCCTAGAGAGACTAGAATTTTTGGCAATCTTGCAAAATCACAAGAGTTTTAATTAAATAGCTTTCAACATAGCTTGACTTAATGAGTCGTAGGACAAAATGTTGAATTAACACAAAGACTTTTCTAATGGGGTGAAAACAAAT-AGGGGTGGCTTCTC---TGGGCTTTCTATAATTGGAATCATCAACCAGAGGTGTCAGCTGAAGGCTCCCTGGTGAAATCC--TTTGTCTCTGAGTCAGCATACAAAAATCAAATGCTGAAAAAAAAAAAGAGTTGACTTTTCAAGTGCAAAATCGTTCAGGGTCAGACAGAGATGGATTGGACTTTCCTCGCTCACTGAGAACTCATAATCTAGGAGTAGAGGTGAGAAGCAGAAGCGTCTAAGATGCCTATAAAGTTCAGTTGAATGTAAGAGACCTGA-----ATATAAACACTTAAAGGCTTAAGTAG-GGTGGAGGGTTAGTGTGAAGGGTCCTCAGCGTGCTCACTGCAAGGCTTGGGGGGGGGGGGGGGACTGAAGGTGCTTCCAAAGCTGGTCCAGGAAGTAAGGGTAATTAGATTAGGATGGGCAGACAGGT-CAGGGTTCCAGGTGAAAAGTGTGGTTCTCGTCAAGCTGGCGCAGCACTGAAATTCCAACAAATACATAAGTCTCAGTGGAGCAGGACTATCCAGCAAGGAAATTATACGCATTCAGGAACAGCACAGGTga
s HiC_scaffold_1 110799743 762 - 233722169 GTGTGGGAAA----------AACTTTTCAGAATTTCATCTTTAAGCAAACCTAAATTTTTGGTCTTGTGACTACTACGCTGATATTTGAAAATGCTGCCTTTTATAAGTTCTGGTT----CTGCTTATGGAAACTAGAAATTTTGACAATCTTGCAAAATCataagagttttaattaaattgCTTTCAACATAATTTTACTTAA---GTTATGGGGCAAAATGTTGAATTAACGCAAAGAATttcttaatgag-tgaaaacaaatGATAGGTGGTTTTTTGTGTGACCCTCCTGTAACTGGAACCACCATTCAGAGGTGTCAGCTGAAGGCTCCTTGTTGGAATCCTTTTTGTCTCTGAGTCAGCATAC-AAAATCAAATGCTG------AATAGGAATTGACTTTCCAAATGCAAAATTG--------CAGATAGAGATACATAAGGCATTGCTTGCTTGCAAACAGTTTACAATCTAGTTGTGAAGATAAGAAATTGATACATATAAGATCATTATAAGTTTAGATAGAATG-ACAAGACATAATAATTAAATTAACAGTTTGAGGCATGAGAAATGGCAGAGATTT----TGGGGGGTT---------TTCACTAGAGGACTTGGTAGAGAGGAAT-------AGGTCCTT-GAAAGTTG---------ATAAGAATATTAAGA----------CAGAGAGGTGTGGAGTTATAGGTAAAGAGCATCATATTTGCCAAGCGTGTGCAAAGGTTAATGGCCATC-AATAAAGTAGCCTGGATGGAGTAAAATAttcacataaagaaa-tatatagacACAAGAATTGCATAGATAA

a score=46215
s chr3           100825102 2766 + 160039680 CAGCAGGGATCAGATGCATGAGAGAGAAACTCTATCACGGGTGACCCAGCCAAGGTCTGAG-GTCAAC-ACCAGCAGGGATCAGCATTT--------CTACCAACCCTGCAGCTTCCTGGAATTCCTCAGACAGTGAGTTTAGATCCTCCTTGTGGC---CTTGTGCAATTGAAAGATAGCGACCTGTA-TGAATTCAAGCCCCGAGGTAGAGACTGGGAAACTTCTCCTCACC-CTTTCACAGGTCAGGGCCTAGAAAGGCATCCCTGGGCCTTGGCTTCAC------------------------------------------GGAGCTATTTCCTCATACCTGAGCCGTCCACAGCTACATGCACCCCTCCCAGCCTGCACTATTTAAAGACAGCACAAAGGAACCCGATGTGAGTCACAACACCCAGGAGGGCAGCAGCAGGCAGGCAGCTCCACTCA--CCAAAATCTGGCCCCACACACAGCAGGACTGTGGGAAGGAACTCC----CTCTCCATGGCTTCCTTGGGGCAGATCATCTTTTGGAGGTAATCctctctctctctctctctctctctctctctctctctctctctctctctccctAAA-TTGAGAACAGGGGTGGGGTCTTTGGGAGGTGCTAAGAACCTGTGGGCTGTGCTACAGGGTCACACTTGCACTTTATCCGGTCCAGCACTGGGAGAGGAAGAGGTTAA-------------TAAGCAACTTTAGCA----------GCCCTG---AGCAACTGCCCAGACTCAGGGAAGGTTCTGGTAGGTGATTTCTTTCTTATGAAAGACTCATCCCTACTAAGGCAGCTGTGGACTGAAAACTGT---GTGTTCCACACTGAGGACTCAGCTGAGATGTTCAG------GCACAGTAAACCCAGTTCATGGAGCTGC----------AGAGGT-TGGATGGAGAGCAGGGCTGGTGGTGAGCAG---------------------GCAGGCAGACAGACAGACGTGTTTCAACACTTTCCTGTGGGCATACTGTCTCTGCAGTC---------TCACACTAACACCCAGCTCCAGCCCAATCTCGGCTGCAAGGTGGGGGTCCCTCATTTTCCCAGGAGAGCCCAGAAAGGACACCCTGATGGTTATTGCTACA---TAACCCACTAGACAAATTAAAATAAAATACAATAAAAAGACGCATGCCCACCTGCCGCCTACTGTTCCTCAGCTATACTCCAGGT-----TCCCCGTTAGGACATCATTTACCTTTCTGATTGAAAAGAGATGGAAAATGAAAGGATTTTGTTGTTGTAGTTGTTGTTGTtgatggtgatggtggtggtggtggtggtggcggCCTGGCCCATCCTCCAATCTCCTTCTCCCCCACTAGGAAATAGATGATGATTTCAGTGTCAGTCCTAACTCATTAACAGTTTTTAGGAAGACACACATGCTGGTTCTAGGGGTTGTTTGAAGACCCAGTCTTC-CAATTTCATGTGCCTCTTCCAGTTA--AGAAAAGAAAAGGAGGGTGAGGTGGCAGAAAGGAGAGTGATTAA-------------CAATGAAAAGTCTGTAAAGAACATCACTTCCCACACAGCCTAGAAAATTCCTCCCTTAAAAGAGAACTCCACCTCCCTCACTCATGTTCAGCAAGAGGC----GGGGCAGAGGCTCTGCAGGATCAGCAGAGAGGGGCTCTGGACAGCACCCCTCCCTCACTG-----------TGCTGGGC-----CAACGCCCTG-AGGAGCAACAGGTGTCAATCATCTTT-GTCCAGAAGCCTC-AGCCTGTCTGGATGGCAGTCGGAAGCACCCGTGTCAGGAGC--TAGCATTTTGAAAGCACCAGCATACTAGGTACTTTGTTG------GCGTCTTGAATCTCATTACC----CCTTGTAAAGGCTCTTCATAGCCCTGAA-------GCTATATACATAAGGGGTGGG-----------GCAGCTTTAAACCCACT-------------------------CTCTGAGAACCCTCTGAGGAGCTTGCTCCTGTTCCC---GCCATGGCTTTCCT--CCTCTACCACCCAAGCTTAGGTTCTCCAGGATGGGAAACA-------AGTGTCTCTGTTGTTCCAAGGTCAGGCACGTGGGCTTTCTAATAATACATTGCAACCAGCCAGACTGGTTTTGCTGGAGGATCAGCCAGAGGTGGGTGTTCAAAATGTGGGTCCCCCCACCCTCTAAGATTTAGTGACCCACTAGGATCAACAGAGGCTTCTCTTAGTGACCCTGGTTGCCTTGTTCACCATTTAAATGTTGCAGTTGCAAAATCAGGGACAAGCCACAAGGGTGACAG--------------------ACAGGGAAGAGGGACCCTGATCATC-TCAATGGATAGTGGGA------TCAGAAAGCTT-TTCTCTAGATACAAACAGAACCTAT-TTGGCGAACCCAGTGTCCTCTCTCAGTGCCAACTAATCTCCTTTCTTTGCCATAATCCCCTTTATTCATAATCGCTCCTCTCATTGATAGT-TCCAAGACATAGCTCATGG---------GAGGGCCTGCCATCCCATCTTCTGCAGACCCAGCAGATTGCTCCCTTACT---------AGAGTTTGATCCTTTCATCCTCTCTCTCAGAATATGTATGCTTCGGGGA---------AAGAATGCCC--------TGGCACA-TGAGGAGCTGTGTGATCCAGA---------TTCTCCTGCCATCATGGCTGTCCATGGCACCAGCAGTCACTAATGGACCATTTGTCAAGTGCTGCTTGGAGTCCAAGGGTG--GAGGTCAGGATCACTAATCTGAGAGCA-TATGTTCTGGTGAACAGTA-TAACCGGGTGTCTGTTCTCTGATGGGTGTTGCACTAGGCACTGGGACAAAGATGACCAAGATGCTGACAAGGGTCTGACACTAGAGAAGGAGTCTCCGTGATCTCATTCCTTTGTTATGGGATG--ATAGGCTCAGAATGCAATTGGAGCCCTTCCTTGCCCGATGCAtcagggaag
s HiC_scaffold_1 110815333 2791 - 233722169 CAGCATGAATCACCTCCATGAGAGA----CCCCATTAAGGGTGACTCAGCCTCTCCCCGAGTGTCGGCTACCAGAAGGAAGGGAAACTTGGGGACAATGAGCTGTTCTAGTTCTTCCTTGTTTT-----GAGAGTAAGTCT---CCTTCTCTGGAGCTCCCTTTCACTGTTAGGAGGGAAAGACCTATGCTGAACACAAGCCCTAAAGCA----------AGCTTCTCCTTTTCACTGTCACCAGTCAGGGCTTAGAAAGGCAGCTCTGG-CCTTAGCTTCACTGGCCAGCTGGGTGCAGGCAGCCCCAGGCTACGCTGCGCTGAAGGTCTGTTTCCTCATACCTGAGCC----------------AGCCTTGCCAGCCCGCACTATTTAAGGTGAGCACACTGGAGCTTTCTGTGAGTCACAGCACTCAAAAGG----CA--AAGCACTGAGTTCCACGCAGCCCAGCTCCTGAGTCC-----------TGCTGTGGGAAGGAATCCTTCTTCTCGCCATGGCTTCCCTGGGACAGATCATCTTCTGGAGGTAGGGTACTCT---------------------------------TCTCTCTGTCCTTAAAGTTAAGAAGAGAGGTGAAAGCTTTTAGGAATCTGGAGAATTGCTGGGCTGTTGCATGTGACCCCGCTTGTA--TCCTCTGATCCAGCATTAGGCCAGTGAGAGCCTCACCAGACTATAACCTAACTGAATTCAGCATCACACCCCAGCCTTGTGAGGCACCCAGTGAGGAACAGCGAGGTTTTT--TGGGTGATGGGGTGCT-ATGGAGGGCTGA-CACTAGTGAGGTAGCACTGAGCTGAGAGGAGCACAGGGCACCAGGCTGGGAGCTCCACAGAAATGTACGATGCTGAGCACTTTAGGGCCGCTGAGTAGGG-TGCTCTGGGAAAGAGAGGAATGAGTGGAGA------CTGGCGGGATGCAGTAGCATTTCTATGCGCTCTTAGGATGAAGGAGGAC-GATGTGTTTTGACTCTTCTTTGTGGATGTAATTTCTCGATACTCCTGAATAATTCACTCCaaca----gccccaccccacccccaact-cCAGGCGAGGGTCTCTAGTTTTCCTCGGAGTTCTTTGGGCAGAgaccctggctgctgctgctgctgcttaactttccaga--------aatgaaaga----agcaagtctctccccttcctttttgCTCCT----CTCAGTTATATTGTAGTTGCCTTTCCCCTTTAGGATATCATTTACCtttctggaaaggaagagatggaaAATAAACG----------------------------------------------------------------------------------------------------AGTCGGTGATTT-AATGTCAGGCAGAATTCATTA-CAGTGTT-AAGAAGACATATTTACTGGTTCCAAGCATTGTTTGAAGGACCAATCCTAATAATTTCTAGTGTCTATTtcaatgagaagaaaataaaagaaaacagagggaagaaataaggaaaagaccAAGAATCTAGATTTGCAGTGAAAAGTTCATAAAGAG----ATTGACAAAACA--CTGGGAAGTTCTTTCCTTGAAACAAAATGTCAGCTTCCTCACTCAGCTGAAACCACCTGTCCTGGAGTGACAGTCTTGGTGGGGTCAGCAG---GGCTTCCTGCACAGCGCTCCTCTCCCTGTGCCTGGCAAGAATGCTGGGCTCCATCAGCTCCCTGGAAGAGCAGCAAGTCGTGGTAGGCTTTCATCCAGCTTCTTCTACCCTGAAAGGATTCCCCTAAGAAGCACCTGCATCTGAAGTGTTAACATTTTGCAAGC----TTATGGTAGGTGCTTTATAGtagtatgtcttttaaatctCCCTTCCAAACCCTTGTGAATGTTCACGATCACCTCAAGTAAGTATATCATTTGCTTAAGGCCTTAGCTCATGTGTAAGGGGCTTTAAACCCAGTACACTTGACACTCAAGGCCCAAGTGCTCT----ACCCTGTGCTACCCTTGCCTCTGTTCCCACTGCCCCAGCTCCCTTTTCCCCAATCCCTCCAGCTTTG--TCCCATGGATGGGAAACAGGCAACAAGTGCCTCTGTTGTTCCAAGGACAGGCGTGTGGGCTTTCTAATAATACATGACAACCAGCCTGACTGGTTTTGCTGGAGGATTACCAAGAGGTGGTTGTTCAAAATGTGGAT-CCCCCACC--------TTTAGAGACCCACTGGAGTCAATAGAGGCTCTTCTTGTTGGCCCCTGTTGCCTGACTAGCTATTC--ATGCTTTGGTTGCAAAAGCAGGAATGAGCTGCAAGGGCAGCAGATCCTTTGTGCAAAGCAGTCACCAGGAAGTGGGAAAATGGTCAGCTTCAGTGGTAAGCAGTGTTGTCCTTAAGCAGCTTGTGTTAGGGATTGAGATGGAGCCCACAAGGGGGAATTCAGTGTCCCATCGTGGCCTTAACAAACTTTCTCCCTTTGCCATAATTTTATTAACTCATAATGGAACCTCTTTGGGGGAATGTTCAAGGCTGCAGTGATGGTGACAGTGTAAGAGTCTG-----CCATCTTTTGCAGAACCAGTGTATTATTCCTTTAACAATTACTAAAGAGTTTAATACCTTCA---TATATTATGGAATGT---TGCTTAGGAAATTCAATTTTTACCATGCCCACCCTCTTTGGCACACTCAGGAGCTGTGTAATCGAGGACTCTCCACTCCTCTCCCCATCATGGCTATCAGTAGCAGCAGCGTCCTTTCAAGGAACATTTGTTGAATGCTGCTTGGAGTCCAATAGTATCAAAGTTACATTTCCTGATCTGAGGGCATTGAATTCCAATCAACAATACTAATAGAGTATGTGTTTT----------TTGTGATAGATTCCCAAATAGATATTTCCAACATACATTTAAAAGTAAGATAATAGG------------------------------TACAAGATGCAATAGG--AAAGATGTGGTAGGAACACTTTCTTGCCCAGGGTTTGAGGGAAG

a score=10075
s chr3           100841241 655 + 160039680 AGTGACAACAGCTGGCCAGAACTAAATCAGTACTGCTAGAGACAGTCCCTTCCTTCCCACTCTTCCCTTCTCCTTCATTTCGCTACCCCACTGCCCAGAATTCTTTCCCCCGAGAGAGCCTTTAACGTCGATGTCTG----------GTTCTCAAT----TTGAGAACCAATGGTCATTAGTTTGAGACCCACTCTAC--AGTGACTAAGCATTTTGACAGTGTTTGTCAAAC---------------ACATTT-------------AGGAATAATAGTGATACTCTGGGGAAGTAGAAGATGAAAG------------GTGTTTCTC------CTATGAGAACACATAATTAATTTAATGATAGTAATTGACTATAGCTTGGTAAGATTAAATGATATGAAGTAAGGCCCTGGCAATTTTGTGTTCTTACAGCAGAAGGCACTACCCAGAGAGGGTATGCCTATGAT-----TTTAAAAATTCACAAAGAAATT------------------------------------AGCTCTTTTGATTTCTCCTGAGG---TGGAAATAAAGCCTTTGACTTAGGCTTCCTTCAAAAGCATGCGGTGGTAAATCTCGACCCTGCCACATCCTATTTCAGACCCTCGGGTCTCATTTGTCCTGTAAATATGGAATCGAGTCACCTTAAGCATGTGCATGCAGTGCTCTGAGAGGAAGGGGAGGAGGCCACGAGAGCCATGGGAGTCATGGACGCTGCTCCTTCTCT
s HiC_scaffold_1 110835422 695 - 233722169 agagagaaaaagcaggCAGGGCTAAGTCAGTGCTTTCAcgg------------tttctgtttttctccctgtTTTCACTCCACTAGCACACTGTCCACAGTTCTTTCTCT-GAGAGAGCTTTAAAAGG-GTTGTCTGTCAGTCACATGCTATCAGTGCTCTT-----CACACGGTCATCCATATAATCTATATTCTGCTAAGTGATGAGGTATTTTGACACTATTTGACAATCTAACCTAATCACCTGACATCTGTTCAGTATGAGTAACAATTATCATGGTATTTCAGGCTAATTGAAGATGGGAGTTAAAAGGATGGGTGTTACTTACTTCACTAGGAGAGGACAGAGCTAATTAAAGGA-----GTTAATTGTAGTT------------------------AGGGGCCTGACGGCTTTGTACCCCTACCATGGAAAGCATTGCCCAGAGTCAGCATGGACATAAAAAATATTCTCAGATTCTCAGGAGAACTGCCGTGAACACTCAGTTACCAATAAAGGTAAGAACAAatccttttgatttttcatgaggaAGTGGAAGAAAGGCTCTTGACTTAGGTTGACTGGCAGAGCAAACACTGGTAAACCCTGAGCAAATCAGGTTGTCATTCAGATCCTCACAGCTCACTTGTTCTCTAAA-----AGCCAAATAATCTTAATAATGTAAATAGAATACCTTGGCAGCAATGGGAAAAGG-----------GTGGGA--CATGGATACTGCTACTTCTCT

a score=87977
s chr3           100852105 7902 + 160039680 [encoded data, 8696 characters]
s HiC_scaffold_1 110852275 7308 - 233722169 [encoded data, 8696 characters]

a score=6172
s chr3           100864597 280 + 160039680 GAAATGTTTTTTTT----TTTT----AATTAACAAGCAACAGA---------TTTAGCTGGGCTGTGCTGACAGTTCCTGCTTCTCTTTCCAAGACTCTGGAGGCTGACCGATTTCCAAAGAGACTACAAGTTTAGAAAAAGAAAACAGAAACAAAATTGCAGGTG---ACTCCTCAGACAGAGCACTTGCTgacagacagacagacagacagacagacaAAAAGCAAGGTCCTGTGGTGATGTTCAGGGACAAATGTAGGTCTGGGGTGACAGGGATGGGGTCAGCTCCTTTAACTGAA
s HiC_scaffold_1 110861555 260 - 233722169 GGAATATTTTATTCatagttttgaaaaattaataagcACCAGACAGGAATGATTTAATTTGACTGCTCTGGTAGTTCCCGGGTCTCTTTCCAAGGCTCTGGGGGTTGAACAGTTTCCCAAGGGAACACAAGTTCAG--------------AACAAATCTCAAGGTGGTTACTGCTTAGACAGAA-ACTCACTGACCAAT-GGCAG--GGTTGGGTTGACACCAGGAAAA--CCTGTG-------TCAG-----------GGCCTGGAGTCA-GGGGATGGGCTCA-CCGCTTTGACTGAA

a score=12371
s chr3           100874610 677 + 160039680 TCTTTCTAAGATACCTATTTGTAGGAGGAG-CTCATGTGAGAGAAAAGCTTGAGAATGCCTTAGATGGCATATATTATATGGGGCACTTGTG------------AGGCACTGTGTCAGCTACAACAGAGAAGTGACTTGGTGTTTCTCCATTTCT--GTCCACAGTATTATTAACATCATCATCATCCTGGCTGGGGCCATCGCACTCATCATTGGCTTTGGCATTTCAGGTATGTGCCATCTAACCAAAGTCCACACTGCGTCCATCTCCCGTAAACCTCTTCTCACTCACTGGGACAT-------GTGAAGGAAAGGATTTCTCCCCAGAG----------------------GACTTCAAAGCAGA-CACTTGCTC-TCCGTACTG--GGTCCTCTTTGCGTTACACATTTAACTCCATAGGCATTA-----CTCCCTCCTAAAC---------------------------AGGAGCCTCAGGTAAAG----------------------------------------------------------------------------------------------GGAGAGCTGACCATGACTTCC------------------ACACCAAGT-------------------------AGGAAATACGTGCCACAATAACCGCTCT---------TCAAAGGCAGTTAGCTCATGTCAGCCACAGGAAGCCCGCACACCCCTCTTCTG-ATAGGCCATGTCTCTATAGAGC-ATCTATTATGGATGCTGTTAATTACGATGTAGTTAGGCCAGCAGCTGTCTTCTCTAAGGCTAGTTGTTTGCT--GTTTTTCATAAACTGCCTGACTAGGGCCAATGTACTTATTTTAACTTGGTCTGTGACCAA
s HiC_scaffold_1 110864357 877 - 233722169 TCTTTCCTGGGTTCATATTTCTAGGAAGAGGATTATGTAGAAGAAAAG-TTGAGAG-GCCTTGTGTAGCACATATTATgtatgacaggtgtgtaccaggTAACAGAATAGCGTGTCAGATGGAATTAAGAagtaattttctgtttctctgtctctcttttcacAGCATTATTAGCATCATCATTATTCTGGCTGGAGCAATTGCACTCATCATTGGCTttggtatttcaggtatgtgattTCTTGCTTTG--CCACAATCCATTCACCCCTCATAAACCTCTAATAAATCATTCAAGTGTTAGCCTAGGAGAACAGAGAATTTGGACCCAGAAATTCTCTGGGTCCAGTCTACTCGACTTCAGAGTAAAGCACTGGTTCTTCTGCATTACCTGTCCTCATCACCTTAGTCACTTAACTCcttgtacctcagtttcctcatttttaaactagaaaaataatgaCCACTCAACAGTTGAGAGAATCAAGTAAGAAAGTTACCAGTGATCTACTTACCAGCCAGTGCTGAAAATGTTATTCTGGGAACGTTGGAAAAGTATAGTGAGCCATTCTATCAGAGGTTGACCTGGACAGATGGTTATGACTTTTTAGCCAAAGTTTTAAagaatatcaattttttttacaCAAGCATCTTAGATAAAGAGAAAACTGGCCATGATCATCGCGCTATGTAGGAATCAGATGCCACTA--TGATGTCAGTCGTGGGagactt-ctctttcctcttctgcgCAAGACATTTTTCT---GACCTATCTCTCCTG--------------------AGTTAGGCCAGCAGCTGTTTCCTCGGAGGCGGAACATTTGCTCCACTTCCTGTAAACCACCTGACTTAGACCAACacatttattttaacttaatCTGTGACTAA

a score=10287
s chr3           100878906 566 + 160039680 atacccagaaagtgacagaactaggacc----------cagagtgatatagtcaccatgttcccagatgcccacactctGCCATATCCCTACATCTTCCCTTTCTTTCTCCTGACCTAGCATCTTTCCTAGTT-TCCTCGTATAAGCAACTGCTACACG----CCCATTTTCCTCTTTGGCTAGCATGGTACCTACCCATAGGTATCATCCCAGCCTGGAACAGGATGTGTGTTTCTGTCACTAAGTCATGAAGTATGGTGCAT-TCTGCACAGCTGCACTACAGTCATTGCTACAAGGACCCT----CAGATAACGGCTTCTAGTATGTTTT--ACACCACTGAAATGTATAAAAACCTATA---CTGCATTGTGTCAAAGGACAGTTCATTTCCTAACTTTTATCCAGTGCTCC----CCCATCACAATTTCTAT-GAAATGTTTACCTCATGTTTCTTATA--CCCACCCCC--AAATATCCCTGCTTCTACAGGGGAGAAGCAATTAAACATTTCTCACCTGTGT---GGCTATGTTG---AGACTACTACTTGCTTACCTATGATG--TCTCCCATCCCTTTCCTCATGTGCCCAGAGCTATG
s HiC_scaffold_1 110869147 571 - 233722169 ATGTTCAATATGTCACAGAGCTAGGATTTCGACCCAGTCAGCCTGATACCCAGGACATGTTCTCAAACACT---ACACTGCTGCTTCCTGAATTCTTCCC-----------------AGTGTCCTTCCTAATTCTTCTCACACAGGCAACCATAGCCCGGAGCCCCAC---CTTCTTTGGCAAAAGTG--ACC--CTCACAGGTGCCATTTCAGTTT----CCAGCCTTACGTTTCTGCCTTTAACCAGTGTTCTATCATGCCTGTCCAGACAGCCAAATTTCAGGAGATTCTG-AGTGACCATTTGTCTGTTGAAAGCTTCTAGCATGTTTTCTATGCTATTGGAAGGT-TCAGAATTTATCGTTCTGAGTTGTGTCAAAGGACAGTTCATTTCCCAGTTTTTATCCAGTGCTATAGGATGCCTCATAACTGCTATAAAAATACTTGCCTTGTGTTACCAATGCTCCCACTCTCCAAGATATCCCTGCTCCTACAATGCGGGACCAATTAAACAGCAATCACCCCTGTAAAAACCAAGATGAATAGATTTCAGCTTGCTC-CCTTTGATGCCCCTCCTTTCTCTTCACTCAGGT---CAGAACTGTG

a score=31025
s chr3           100880785 1426 + 160039680 ACGTAATGTTCCTTG-CACCAGGATGTGTTTGTACATTTGAGTACATT--AAGTTCTGTTCAGTCACTTAACTCCTTATTTATTCATGTAACAAGCATTTGTTGACTCTGGCTG-GATGCAAAGCAA-GCCTTCCTCTTCGTGA-TGGCTGAGGTTCTCACTGG-TTTTAT-TCTCCTCATATTTCCTATGG-ATGGGGATTCATTC---AGTGAATTCAT-------ACCACATCATGAGTGTGACCTCAAATGACCTGAAGCTGCAGCAGGTCCCCAAGG-CATGCCAGAACTGCCTATTTTTAATTACCAAGTTCTCTAGGAGATGTGTCAGTGGATTCCCTACCTGTGGGCTCAAGGCTGATGATACATTAAAATGAATTCCGTAACACAATTACCAACCG-AGGTATGTCATTATCATTTCATTTCCTCCGTAATTGTGCTAATAATGTGGGTTCTTTTCTGAAAAGTAATTTTCCAGATTAACTTCGATGACACTTTATAAAGTACGGTCACCTTCTCTCTAGCTCTGACTGAGTCCCATTTGTTCTGTGGTTTCATTGAGAAACCGTATATATTTTTATTGTCCTTTTTTTTAAAGGCTAATGTTTCTCCCAAATTTAACTGCAGTGACCTTGGCACGTGCTCTTCACCCTGGCAATGGATAGATTATTT-AAGCAGTGCTTTGATTTGTGCTTAGCCCCATTTATTCATAAACTCAT------------AAAATATTATTTCTCTGTAG-AACAGGACAGTAAACGTGATCAGGCCTGTAGTTACTACTGAAACAGTTTCCCCCTTGAACAAAGCTTGCAGATGAGTGCAAGGTCCAGACGTGAGTCAAGGAGGAGGAAGGCGGTTGCCATGGTAAAGGGAAAAGAAGAGCTATGGGGG-----CAGGTGTATCTGCCTATTCTTCCTTAGCAGGCTGGA-AAGGGCCTCCCAGAAGGACTGGCATCCCAGCTGGTTCCAATAAGAGTAGA----------TGGT------GGGAAAGCGGGGACATCGAGCCAGAACTCCTGACAGGAGAAAGGAGCAGGGTGGTGACAGTGCAGAGTGTGACCACACAGCCCATGCACGCGTGGGT-------------ATTTTAATAAACAAAGATAAATGGAAGGAAGCCTGAATTTTCAAAGCAG-AGTTCAAGAAAAAGCCTGGCAGGAGACGG---GCGCCGTGTTCTTATCAT--------AGTCTTCTTTTGCCATCTTTCCTAGTTAGTTTTCCAAAtctctgtcacaa------aaggccacacatggcagctgctccccaaatcccttttcttccacattgccaaacctccaaagcgtcttc-cagcccagcctaggcac----gcctgtttcctccatctcctttttccagctatacttcctcttcgatccctagccctctgttctttttttgtgcagatctgtttagcttgatgtctttgggtctattttccatgtactacactcatctcttttaca
s HiC_scaffold_1 110870744 1456 - 233722169 ACGTAAGATTCCTTTTCATGAGAATATTTGCATGCTGCTGTCTGCACTTGAAATATAATTCTACCACTT---TTTATAGTCATTCatttaacaagtatttattgactCACTCTGAGGTGCAAAGCAACAGCTAGGTCCTCATCACTTTTTTAAGTTTTCCCTGGCTTTTATGCCTCCTC----TTCACGTGATATAGAGATTTAATCGACATTGTACCCATTCCATCTGCCATATCATTAATGCAGCCTTAAATGAC-TAAAACCGTCCAGGATCCCTAAGGGCACATCACAGCTGCCTACTCTTAACAATTAAGTTCTCTAGGAGATTCTTCCGTGGATTCCTTACCAGTGGGCTCAAGGC---caacatattaaaattaattcagtaGCAGAATTACAAAATGAAGATATGTCATTATCATTTAACTTTCTCCCTAAACTGTAAGATCATGTA------tttttgaaaggtaatttttcAATTCAACTTCAATAGCACTTTATAGC-TGCAATCAAATTTACCCTTGCTCTAACGTAGTTACATTTGCTGCATGAAT---TTAAGAatcattgtgtatttttattgcttttttccccAGTGGCTCACATTTCccaaaaatttaaatgtagtGATTCTGCCAAACGTTCCCTATTCTTGCAATAGATAGATTATTTCAAACAGTGCTTTGATTTTTACATATtcccatttgttcattcatttattcatgctcTTAGCAACTACT-TTTCTCTGTAGAAACATAGCACGAGGCATTTTAGCGCCAATGGATATGATTGATACAGTTTATGCCCTTGAAAGAACTCACAAATCAGTGTAAGAGATAGACTGGAAACAAGGCAGATAAAGGC-----------------GAAAGAAAGTGTTACAAGCGAGTACAAAGAATATCTACAAATTTTGTGTTGTCAGACTGAATGAATGTGTGGTAGAAGG-CTGCCCTCTGAACAGATTTCAGTATAAGCAGAATGTGAGGGCTGGTTATAAAGGGAAAGAGAGGACTTAGG--------CTTTAGGTGGCAAGATGAGAAAGGCTTTGAAAGCACATAGCGTGAGCAGGTAACCCATGCAAGTCTAGGGTGCCTCGGATACAAGTCTGATAAGCACAAATAATTGAAAAGCAAACTTGATCATTATAGTTGTAGCTAAAGAAATGTCAAGGCAGGAGATGGGGTGTAAAATATTCATATTACACAGCAAAAATGTTATATTGTCCTCTTTCATAATTTATCTCTCATATCTCCCACATGAATGCTCAAGGTCA-----AGCAGCTGCTTCCAAAGTCTTTTTTCCCTCACACTCTCCAGCTACCTGCATATCCTCACAACCAAGCCTCTGTACCAGTTTTTGTTTCTACTGGCATGTTTTTCTAGTTAAAATTTTTC-CCTATCAGTaa-tctttgttc-tttcttatgCAACTCTAT----CTTAGATTCTCCAGTTCTATTT---GTTTATTACTCTCATCTACTCTTCA

a score=62168
s chr3           100882711 3176 + 160039680 AATCAGGTGTCTATGTGAAGAATATGCGGAGGTTGGGACAGCATCT----------CCTGCCACTGTCCTCAGCATGACTCAGGATGAGA----------------CTCTCCATAGTTCTCTTCCTCACCATTCCTTGTAACTGGTCGGTAATCCTCTTGGGATTGACAGACAT--TTTCTTAGCTTCACATCTGTGTCATGGGAGCCACTAAAGA-----------------------------------------------------------------------------------------------------------TATTTAATTAATTGAGTTAC--CTTAAGGTGCCATCAGTCAGAA-----CAACTGGCACAAAGAACCC--TTGACT----------GGGTGGGCTGTAGGCTGGACAACCAAAGGAGAGGCCGTAGAATGGAGATACTCCCATAGTCAATGTTTCTCCTGCTGATAGGATCAAACGGGTGAGGAGAGTAGTTTCTATCTTGGACCAAA-----ACATCACTAAGTACCACTCTTCATTATGATGTAGATAACACTATAACTTCAGCCACAGCACTTCCCTTCTCCATGCCTGAGTTCCTTCATCATTCCAAGAAAGA-CAAAGTCCCAGCATGTTAG-AATTGAACTTTCTTTGGAATTACTAGCCTTATT-AGTTAACATGAAGTATCGCTTTGTGTCACTTCTGATTAGCTAAGTATAATACCTTATC-TGTGTAACTGCCGTTCAGCAAGTCAAGTTTATACCtacttgatttgttcctcacaataacctctcaacgttgacaagatgg-tagtgttccctccattcccctgagagccagaatagtcacatgacttgtttaagattaaatggctgttcaggaacaaagccgggatgtgaatattcacactccagagttcCTCAACTCTGGTGTGTTTTCCTCTTGCTGCCTCTGAGGGTTTGGGTACATTGTTCTTACAAAAGCTATTGTGCA---CAGATCTGCTGTAGGTACCAACATTTCTTCCTGCTCTTTCTAGTCTTTCCAGTCATGTCTTTTTGTGTCCTTCTCTACTTCTAACTGATCTGGACATCTCTGTCCGGCATGTACTAATGAAG------AACATGGCTGCCCAAGTACCAGGGCCTCACT-GGCATGGGTCCTT----CCTGAACCGCAGGCAAGCACTTCATCACGGTCACGACCTTCACCTCAGCTGGAAACATTGGAGAGGACGGGACCCTGAGCTGCACTTTTGAACCTGACATCAAACTCAACGGCATCGTCATCCAGTGGCTGAAAGAAGGCATCAAAGGTTTGGTCCACGAGTTCAAAGAAGGCAAAGACGACCTCTCACAGCAGCATGAGATGTTCAGAGGCCGCACAGCAGTGTTTGCTGATCAGGTGGTAGTTGGCAATGCTTCCCTGAGACTGAAAAACGTGCAGCTCACGGATGCTGGCACCTACACATGTTACATCCGCACCTCAAAAGGCAAAGGGAATGCAAACCTTGAGTATAAGACCGGAGGTGAGTCACTTCTGAAAGTGGGGGGGGGGCACCCTCAAAGATGTCTGAGAATAGCTGAGGGCATTAGTTGTTGATAAAAATATCATGGTGTGCTCATAAATGACCAATACCAGACCAAAACTCTCTCAGTTCTGTTAGTGTGTATTCTCAAAGACACATTctccccctccccctccccctccccctccTGTTTCTTTCCCTCTCCCTCTCCTTTCTTCCCTCTATCACTTCCCACTCCAAGGTGTAGagggtctctctatgtagccccagctggcctgcaactcactatgtagaccaagttagctgtcaaacctgtccacctcag-cctcccaaccactaggatgaaaggtggacagc------------accacccctagctAATGAACGTGGTCTTTCTAAAGTAGACCCTGGCGTTGCTAATAGGAAAAGCCCACAATCTGTCCCAGAATATTTCTATGCTAATTAGACATGAGCCCACATCTGAAATGAGTCCCTCCAGAGACTCCTGACAATGAGAGCCAGTTTAGGAGAGATCCAAAAAGAACCAACCAAACTAATGCTGTTGATACAAACTCAGTAATGTGGCCCCAGTGAAACTCAACCCTCTGTGCCAACACTATCTACTAGATGTTTTCTGAATGTATATATGAGGGATTCGGATAG-------ATGCAACGAAGCATATGAAGATGGTTAATAAACAAAAGTGTTCACCCCTCCTTTCACGATGCTTCTAGTATAGTGCTTACAGAACTG------------GAGGTACCAATTACTAAAGCATAACAAAGAACACCTAAGGAAAATTGAAATCGAACAGTTGAGGGGTTCACAGGAAAAGAAAGACCACACCC-AATGCACATAAGAGAAGGGATAAGAAGCCC-TCATGGCAAAGG--------TGAAAGGGGCTTTGAAGG--AAGCAGAAACTAGCCTATACTCCCCTAGTCTAAACTAGTCTTTATAGGGTTTCCTTGAACACCTCCTGA----GTATATGTAATTCTACAAAGCATAGCCCTAGAGTCAGA-----ACA-------------------------ctctttgagcctcgacttctttattttaagatggggatTAGTGGAGCAATGT-------AAGATGGTCAGACCAAAGAAGCGAACT-TCAGTGA-AAAACTTCAAATAGTGGAAG----AAGAGAACACAGTACGAAAT-CATGGCTCAGGGTTTAAA------ACACGCACTCACATGCATACAAG-----GAGGGAGAAGAAATAGATTCTAATCAGACAGAAATCCCAAACAACTTACTTCTCTCTCCCCTTCTCCAGGAGGCAGAGGTGACACTTAGCACTCCCATTCTGCCCTG-TCAGGGTATGCTGGAGAAGTGAAGT-CACCGTTCAAAGACACCTAACAAATGTCCCCTCT-----------------CCTCATCAGCAAGTGG--GTGTGGAGAGCACTCATCTCTTAGCCTGCCATGTTGATGGGGGGACTTTTCCCTACCACTGTCTTCCTctccaac-------tctaactgtgagaagaacatcatgttagtcccagcagaaaggcgccctacatgatacctgaccaggttctcaaaactgcaagagccataaagagtatag----aaagagtatgtcacagtctataaggctctgaggcaacacaattactgaaaacaaaaagattacatgctgga-----acatcaacaggaaaaacaatgttaatgggtaaaatacagatcaagcctggagtctagttaac----aga----agtgctggtttctcacttttgagatacaatgaccatttaacatgctacattagaggaaacagactggaaagtctagaggaaattctctcttgcagaaaagtctttgggacttttatgcaaatctaaagttgtt
s HiC_scaffold_1 110872203 3206 - 233722169 AATGAAGTGTTTGCTTAAAGGATAGGCAGAGACTGGAACATAAGCTGGACCTAAACACTGCCAGGATCCGAGACAGCTCTCAGGATGGAggcctctctctgcttttctctccaTGGT-CTCTTTCCCATACTTGTTTATGTTTACTCCTGTCTCCTCTTGGACTCGAAGAACATCCTTTCTTGCCTTCATATCTA-ATTATAGGAGACTTTGAAGAAGGTTCAGTTAAGGTGCCTCACTGCTCtaagcacctgcactctgttcttgAGTGCGTACCATATCTATCTCTAACAAATCCTTCTCATGTCtcttaaaaaagaagaatatcCAGCTAATTAAAGCACTCCTGTATGTGTCTTCAGTCAACAGCCTTCAACACACACAGAACAGCTAGTTGACTCTTCTCTGATAGGTAGGATATAGCCTGAGCA-------GAGCGGT----AAATATCAGTGGGTCTATGATGAATCCTTGTACTGGTGGTGTATTCAGAGAGGAGAAGA---TGGCCTTTATCATGGGCCAAATATCAACTGAATTAAGTACTGTTCTTCTTTATGTCATAGCTAACTCTATAACTTTAATCA-AGTGcttatcttttttattccttagttTCTACATCATTCAGAGTTACAGTAAAGCATCAGTGCTTTAGGAATTGAGTGTTGATTCAAATTACAAACCAAATTCAGTTAACATGGTACTTTACTTTGAGCCAC--------AG--AACAATAATATCTTATAATGCGCAATTGCACTTT-GCAAATCAAGTTCACATCCATTTGATTTGATCCTCACAAGAACCCCATAAACTAGGTAAAACAGATAATGTTAACTCTTCTTTTCGGAGATGCAGAGTA-TGACATGACTTGCTCACAGTGACACAG-TATTAAGTAATAAAGACAAGACCTGAAT-TCTACTCCTCGTA----CCTAAGTGCAGTGTGTCAT--------TGCTTCTCATGGTCTGGACTGATTGTTTTTACAAAAGGTATTGTATATGGCAGATCTGATATA--TAC-------TTTTTCTGCTCTTTCTATTCTCAAC-----ttcctttttagatgtttttc---------cTGTATCACAGAAATCTGTTTGGCTGTTAGTAATACAGTTTAGTAATACAGA-----AAGCTCCAAGGCTTCCCTTGGCATTGATCCTTGCTTCCTGCATTGCAGGGAAACACTCCATCACAGTCACTACCTTTACCTCAGCTGGGAACATTGGAGAGGATGGAATCCTGAGCTGCACCTTTGAACCTGATATCAAACTTAATGATATCGTGATTCAGTGGCTGAAAGAAGGTGTCATGGGTTTGGTCCATGAGTTCAAAGAAGGCAAAGATGACCTGTCAGACCAAAATGAAATGTTCAGAGGCCGGACGGCAGTGTTTGCTGATCAAGTGATAGTTGGCAATGCTTCTCTGAAACTGAAAAGTGTGCAACTCACAGATGCTGGCACCTACCAGTGTTACATCATCACTTCTAAAGGGAAAGGAAATGCTAATCTTGAGTATAAAACTGGAGGTAAGTTACTtctggagggagagaaggaaagtaCCAAATGATATCTGAGGCTA---AAAATCATGACTTGCTGATAAAA-------TATGTGCTCACCATTGactaatgacaaagaaaaaccctCCTGATTCTGTTAG------------AAGCCA--------------------------TCATGCTGTTGCT------------------------------------------CAAGACCCACACAGACCTCCAAAGTAGCC-----------------TACTATG-----CTAGTAAGACtttgaatcttttcttctggGTTCTCAGAACGTCTACACTTCCAgatgtgtttcttaaaatattttaccaac--------ACAAACATAGTCTCCTGATGGTAGCCCTTGCTATTTCTGATAAGTGAAACCTA----TTGGCCTTGGTTGTTTCCATGCTGGCTAGGTTTGAGTTCACATCTGAAACAAGTACCCTGAAAACTCTGTAACAATAGAACCCACTTTAGGAAAAGCTTAAAGAAACTAAACCAAAC-AATATTGTC-CTGTAAACACAATAGTACCCTCCCCATGAAATCCACCCTTCCTTGCTAac------------ttattttctgaatttatgtGTAAGGAATATGTATAGAAGATTAATACACCAAGGGAtataaaa--gataagaaaacaaagttttattttgttttgtttgcagagTTCCTAG-GTAGATCATACAGATTTGAAAATTCTTTCAGGGATAATAATTGATGAAGTACATCAAATG--CtttaagagaaatataaatagaaGGACTCAGGGATTCAGAGGAAGAGAGATATTGCACCTAAACgcacaagaaataagaaaaagaaaaccctttGTGGGTCAGTTGACATTCTGAGAGGAGCCCTGAAAAACAGGCAGAAAGTATCCTGAACTTGCTTAGCCTGAACAGGCCTTT----------TGTGAACACCTCCTAACCGTGTACATGTGATGATTCAAAGCATAG-TCTAGAGCCAGACCTGGACAGACACAGTGGGGTGGGCAAAGCAACCTCTCTGAACCTCAATTTCTTCA-TGTAAGATGAAGATTACCTTTGTCATGTCAAAGGAAAGCTACTAAGGTCAACTTAAAGAGCTCCCAGTGGCAAAGctcaaaacaatttaagcaacaaaataataaaatattgaatatataaCTCAAGGTACAAAGTGAATACACGAGTTCATACCCATGTAAATAaatgaagggaaagaaata-atCCTTCCTTGcaagtaaatttaaataatttatacagCTTTCTCCCTCTCTAGGCAATTGAG------CTTAATA---CCTTTCCCCGCTACTCAGCATATTTTGAAATAGTGAAATGCAGCTTCCAAAGA-ATCTGGCAAACAACCTCACCCAGGTGATCCAAGtcaacatcaccagggatcagtCATGTCGATGGCGTGTACCTTCTAATATGATCTGATGA-GAAGGAAACTTTACCTCCTATAGTCTTCTTTTCCAAAAGTTCAGCCTAATCATGACAGAAGTATCA----AATTCCAATAGAAGAATATCCTACAAAACATCTGACCAGTATGCCAAAACTATCAAGACCATAaagcacagaaagataaaaaaaatatcaCAAACCAGAAGACTCTAAGGAGACCTACTGACT-AAAACCACAGGATCCCGAAACAGAAAAAGACTTCAGTggaaaaagta----------gtaaaatata-atCAGATCTG-----TAGTTAACACTAAGATATTAGTGACAGTCTCTCCATTTT----TACA----------AATGTACAATAGTTAAGGTTAT---------AATATACAGAAAGTTGCTCTTTGTACA--------------TTTTGTGTaaacctaaaattatt

a score=29641
s chr3           100887338 1290 + 160039680 TCCTGCCATAACAATAAGCCCAGAGCCCTAACA-----------------CTCTATCC-----TAAGAGAACGGATACCTTAATTTCCAAGTGTTACTTT-AATAAGTAGCATT-TCTTAGAATACAAAAAATACCTACCATTCTACTTGTAGATATCAGAGCTA-AAAATCTCTACCCAAGCAAACTCCAAATCCCCACAGTGCCAAGGCTTGTGAATAGGCCTTCTGTGG-TGAAAGATGAATGTTTGTTCTTTCTTCTT-ACCCTTCTCTCTTTACCTC---------------AAAAC-----------ATATGATTCAGTAGGCCCTTCCAAGGCCCTA--TTGTCCTAAGG----------------AAAGAGACAtcctcctcctcctcct------------------------cttcctcctcctccccttcctcctcctcttcctc----------------------------------------------cttc------------------------------------------tTCCATAATCACTG-AGTTCCTCTTACATGGAGAAGATTATCAA---AATGCTAAAATACATGAAACTCGGGTCCCTTGAGTTTGTGGTACTGGCCAAGGGTTATAATGCACAGTGATGCTCTGAACAAATAATTTATGCCCACGACATAATGGGCCTTACACAAACATTACTGTGGGGGTGTGCTGAGTCACTTCAGTGAGAGAAGTGATTGTCCCATGTTTTTAAGACCTAGCACTTTagctgggtggtagtggtgcatgtctttgatccagtactccagagtcagaggcaggcagaactctgtgtagtctacagagtgggttccaggacaaccagagctacacagagaaaccctgtctcaaaaaaccaaaCCAAACAAACAAAAAAGACCCAGTACTTATGGTGTTTTTGTCTAATCTGTCTCCCCGTGACATTTGTCCCTTTTGACCTTTGACCCTACAGCCTTCAGTATGCCAGAGATAAATGTGGACTATAATGCCAGTTCAGAGAGTTTACGCTGCGAGGCTCCTCGGTGGTTCCCCCAGCCCACAGTGGCCTGGGCATCTCAAGTCGACCAAGGAGCCAATTTCTCAGAAGTCTCCAACACCAGCTTTGAGTTGAACTCTGAGAATGTGACCATGAAGGTCGTATCTGTGCTCTACAATGTCACAATCAACAACACATACTCCTGTATGATTGAAAACGACATTGCCAAAGCCACCGGGGACATCAAAGTGACAGGTGGGTCTCCTGGGG------------------tttcccgtgctgctggagatgaaacccagggtctggggggta--caagtcaagctctctattcccaaac---atcTGCGCGCCTCTCCGTGTTCTCACATGTA---TCTCTAGAAAGAAAATAGTATGTCAATCAAAATTGAATT--------TATTTAATACATACCAGGGTACAAAAAATCTCTA
s HiC_scaffold_1 110875695 1320 - 233722169 TTCTGACATAACAA-AAGTCCTG-GCCTTAATATTTTTCTACAAGCGTCTCTCTGCCTCGATATAGGGGAAAACAAGACTTAATTTCAAAGTTTCCTTCTCAGTGAGAAGAATTATTTTAGAAGACAACACAGTCCTATTTCTGTTCTTGGA----------CTATACAGTCTTTACCCAAGCAAACTGCAGATCCCCAGGACAATCAGGTCTGTGTATGGAATTTCTGTGGGTGACAGGAGAATGTtgcttgtttcttctttattcctcttttttttttttttttttgtcttttttaagatggggtctcgctatgcagttcaggctggcctt----gacctcgctttgtacccaggctggtctcgaactcacaatgatccttccacctcaacctcccgagtgctgggattacaggcgtgagccaccacgcctggcctttATTCCTCTTCTTCATCACCTTAACTTTAGCCTCAAGGCAAAAATTATACAAACCCCATAAAACCTCACAAAATCCTAGGAAAATGCCAATTTTTCTAAGGAATAAGCTTTTTATAATCAATGGAGCACCTCTTACA----GAAAATTAGCTGTTGAACAGTACTATACCTAGAACATAGGACCCTGAGGTTTGTGATATTGGTCAAAGAGTTGGATGTATAACAATACTATTAGCAAAT----TGTGTTTACAAGGTAATGGACCATATATAGACAGTACCCTGGGAAAAC----AGTCACTTCAATGATAGAAATGCCTGTTT-GTGCTTTTAAGACCTAGTGCTT------------------------------------------------------------------------------------------------CAAGGTTACA-----------------------------------------------------------------TTGTCCTTCATGGCTGACTTTCACATTTGTCCTTTTTGATCTTTGATTCTGCAGCCTTCAGTGTGCCAGTGGTAAATGTTGACAATAATGCCAGTGCAGAGAGCTTGCGCTGTGAGGCTCCTCGATGGTTCCCCCAGCCCACAGTGGTCTGGACATCCCAAGCTGACCGGGCTGCCAACTTCTCACAAGCCTCCAATACCAGCTTTGAGCTGAACTCTGAGAATGTGACCATGAAGGTTGTGTCCATGCTCTACAACGTCACAGTCAACAACACTTACTCCTGTATGATTGAAAACAGCATTGCCAAAGCCACAGGAGATATTAAAGTGACAGGTGGGTTTCTCAGGGCTGTCCCTCCCCAGCGCCTCCCCAGGGATGCTGAgtatcaaacttaggaccttgtgcataTGCTAGACAAACAATCTACGACTCAGCTATACTCTCCTCCCTCTCTATGCTTTCCTATGtggatttactgaagagaaaATAATATCTAAACTAAATCTAAGTTACTTAACATATACATTGTATACCAAGGCAC-AAAAATCTCTA

a score=13238
s chr3           100892338 559 + 160039680 TTGGCTGTGTCCTCACTAAGATGATCATAGAATTATCTTTGCTCCACAGACCTCTGAGTCGATTGTATTCTAAAAGGGTGGAGGGAGCAGAGGAACAAATCTGCCCTTGTTGGGAACCAATCACTCCGTTTTTCTGATGCTTTACCTTCATCACTGAT-GCG---AACATCCAGCTTCTC---TCTGACTCTCAACTCTTTTCTGTTTTTTTTACAGATTCAGAGGTCAAAAGGCGAAGTCAGCTGCAGTTGCTGAACTCTGGGCCTTCCCCGTGTGTTTTTTCTTCTGCCTTTGTGGCTGGCTGGGCACTCCTATCTCTCTCCTGTTGCCTGATGCTAAGATGAGGGGCCCTGGCTACACAAAAGCATGCAACGTTGCTGGTCCAACAGGTGAGGTCAAGCACAAAGAGCGTGCTGGATGGGTCATAGCCCAGCAAGCGTACCTAGCCAGTTCTCCTGCCCTAGACTGTTATGAAACAGAATCACACAGCCTTCAGCACCAGCCACAGGGAGGAATATACACTGATCTCAGGTCAGGGAC-TTTGTCCTAGAGGTGTGAAAGGTAA
s HiC_scaffold_1 110881971 515 - 233722169 TTGGCTGAGTGCTCACTGGAATg------gagcttcctttgaagaaagg------GGAAGGTTTGCTTTTAAATCAGGTACAGAAAGTGGTG---CAAAATAGCTTGTTTAAGGAAC--AGCTTTCTGTTTTCCAGGTACTCTTCTTTGCTAACCGGTTGTGTAAGATAGCCAGCTTCTTCTATATGAccctaaacattttt---ttttctctacagatTCTGAAATCAAAAGGCGGAGTCACCTAGAGTTACTGGTTTCAAAGGCTTCCCTGTGCGTCCCTTCTTT---CCTGGTAATCAGCTGGGTACTCCTGCCTCTCTCCATTTACCTGATGCTAAAATAATGTGCTTCAACCACCCCAAAACATGTAAAGTTACTGGCATAACAGGTGAGATAAATCATAAATAGGATGGGAGATTGGTTA--------CATGTGTGCTT-----GTTTTCCT----------------AAAAAGAGTCAAGCAGCCTTCAGAATCAGCCACAGGAAAATATATTTAGTGATGCCTGGGAAATGACATTTTTAGTAGTGCTGTTTATGGTAA

a score=67728
s chr3           100892933 5314 + 160039680 [encoded data, 5962 characters]
s HiC_scaffold_1 110882931 5233 - 233722169 [encoded data, 5962 characters]

a score=19573
s chr3           100900516 891 + 160039680 ACTCTAACTTAAGTCTTGGTTTTGACTTTCAGCTAGTTTTTTCTCTTCCATTCAAATCTGATTGCCTAGTCTAAGCATTGCTCTTAGTATTTGCAGTTACAATGTCTGTTACATAGAACTCTACACATGACC----------ATTTCATGAAAACTTTGGTGCCCTATGATTTCCTCCAAATGAGACAAAAGTGCTTCTCGGTGAATGTAGTCTGTAGCTCTTCATGGCACGCCAAGACCTCGGCCTTTCTCCCTGGTCTACTTTAGAG-CGATCATCCAACTTCCTTTATAACCGTCCACATATCAGTGTAGGGAGAAAACTAGTTTATTATTGACAGAGACATTTCTAGAACTTTATGGTGCTTAATATGACC--AATGAGATAGTTCA-TATGGCCATATATGACTCCAGTGGGGG------------TACCCAAGGTAGATGAGGCTGACTGTGTATCAGGCTTGGAGCATAGAAACAGCAGTTTCTAGTGAGAGGCAACACGTGTTCCCAGGGA---TCTACTTACATCCTGCTGAAGGAGGCTCTCTGAGA---------AACAATTGTGTTCAGTGTCTCCCACATTCCCTTCCAAAGTTTTCCCAACCCTCTGTCCTCTGGGTCCTGCCTCTGAATTTCCAATGTTTTCTCCATCATCCCCTTACCCAGACCCCCAAAGGATACTTCCTGATACCCAGCTACACATGGCAAGTCAGGTGAACGCTGTTTTCAGTAGCTTAGTGCACTATACTCTGATAACGGTTTCTCTTCATTGAAATTGAGCAATGAAAATGAGGGATGAA-CATCACAAAGCTTTC-AACTCGTCAGAGATGCTCGGGACATTA-TG-----ATGATTCTCAGCAAGGAGGCATG-GCATGCTTCCACCATGC------------TTCTGTGCAACA----TGGAGTTAAGAATTACTGGGCA
s HiC_scaffold_1 110888876 889 - 233722169 ACTCTTGTAAAAACCGTAATTTTGACTTTCagct------ttgtctttatttcaaatctAATTGCCTGGCCTAAAAGATATGCTTAGCATTTTCAATTATAAGGTCCTTTAC-CAAAACCCTAAATATTACTTGAAATACCAAGTTTATGGATACTTTGGTCCTATAAGCTTCCCTCAGAACAAGG--AAAGTTATGCACATTTAATATCCTGTG-AGCTGTTCATGGCAGGTGAA-actatttcctttctctctgattttctgtattttcagttATCAAACTTTATTGGTAACCATTCCTGTGTCATT------AGATAACTATTAAGATTTTAACAGATAAAATTATTGGACCTTATGGTATTTGATATGACTTTAGTGAGATGGTTCAAGATAGCCATATATGATTCAAGTGGTGAGTCTGTATCTTCTGCCTAAGGTAGGTGAGGCTGGATGTATGACACGGCAAGAGAGTAAAGGTAGCAGTTTCTGGTGAAAAGCAGCAGGTATCCCTAGAGAAACCTGACTtacatcttttttaaataag-tctCTAAAAGGCAAAAATGACAATTATGTTCAGTTCTTCTCACTTTccctttaaatattttcc-----------------------------atttttctactattatttcCACCAATTCATTAGTC---CCCCCAAAAGATGCTGTTTGTGA--------------GAGAATGGTCTCAACTATCTTTTCATTAACATAATATGCTGTTCTACAGTAA-ATCTTTACTTCATTGGAGTAAAGCAATAAGAATAAAGGATAAAGAATcatgaaaatttcaaattagTCAGAAATACTCAGCATATCAGTGCAGACAAGATTCTCAGTGCAGAAGCAGGAATCTTTTTTAGCCATACAGAGATTAGCATATCTATTCACTAATGCTGGACTTAAGAATCACTATGTA

a score=16508
s chr3           100903384 727 + 160039680 ctgtttaaaggcctaagtcaacacaa------tcacatactgaagtatacatggagctgagaattcattacataaattttgggggaaAGTCTGTAACATACGTGTGTGTATTAATAAAATCAGAGATTATAAATTGTACATACTGAGCTAGACAAATGAGCATTGGGAATTATACCAGCAAGCATATGAACAGTCTTGCTATATTTCTTCTGTTTGACCAAGAATGGATGGTTAGTGTTTGAACAGTGGGGGAACAACAGAACACCTGGT--------CTACCT---------------GAG-ACACCTGAGGA-ACAGCACAGTGACTCAGCACATAGATGCTGCAGAGGGAGCTACACTGACTAATGGCCTCCCAAAACCACCATTTACTATTTTCAGTTTTACAAAAGACTGTGAAAAAGGTCTCGAAAGGTCATGAGAAGATG-AAAATACAACCTATGTGCCTTCAAT-TTCAAAGAAAAAGAGCTGTGT--CAGAGGGTCAGTTGGACTTCATGTAAGcaaaccaaattgc--agtactagggctgtctt----------tggatcacagtgtccct--tccttgggctctcagaaaGGAAACTAGATTTTGCTGTTGCTGATATTTGGTTTGTGGTTGTTGGTTGGTTTGCC---TTTATACCTTTCTTTTCTCACTAAGTCCTGGAAAAGGAAGAGC------ATACAAGGCAAAGTCATACAAATGGGCCACAAACACACTTACCTCTAGCTTGACATAATGAAATCATAAAAGAG
s HiC_scaffold_1 110891758 742 - 233722169 CTCTTTAAAGGCCCCAttccaaatatatttattcatatttggaGATGTACTAGGAGCGAGGAATTCAGCATATAAATTTATGTCACAACTCT--CACATGTATAAAGGAACTAATGAGCT-----ATTATTAAGTACATATGCTGGACAAGGCAAgaga--------aattagaacaaaaatgATATGAACAAATTTGGTATTTTTCCTCCATTTGACCAAGAATAGCTGCTTAATGTTTGAACATCTTGGATCCAACAGAAAGTCTCGTACAAATAGCTACCAATTCAAACCAGGTCAGAGTACAGTTAAGACTGGAGCACAGTAGCTCAGCAGGTAGAGGCTATTAAGCCAACTGAATCAGCTAATGGCCTCCACAAAGCACAGGTTACTATTTTAAATGTTACAAAAGATCATAgaa---------------catgaaaagatgaaaaataaaaccagtgtGGGTCCAGTCTTCAAAggagcagaactgaatcacagaaGGGTACTTGAGCTCTATGTGATTAAACTGAATCGCCAAGTACTA-GGCCGTCTTGGGCTAGAGGTAGGTTACAATCCTTTTTGTCCTGGGGCTCTC----AGGaaacaatctttttctttttctttaatttagttgtttgttatt--tttatttttcttattaaaaccCCTGACTTTTTAT--AGTCTTCAAAGACCAAAGGCGTCTGTGTGCTGGTCAGTGT----CAAGAGGAACACAGACACACTTATCTCTAGCATTacataatgaaaacagaaaagag

a score=19448
s chr3           100909897 2038 + 160039680 gaaattaccaagctgt---gaggtgacatgaaggacactcggat--------cggagggacagcagagacaatcagtgtagatg-ctgactttttgagtccatctgcataacactctgggaaaaggggcatgagtggaggtaggtaaagatgccagtggttgccaggagactggaaaga----ggaccagcggaggagatgctgcacaggggactttggagac-tgactctgtggtggctgaatcatgttgtgcatttgtcaaaacctatagaacataagccgccagtgtgaaccctgatgcaaaccgtgacattcaagtgactacaccatgacttcagttcacacactg------acacgtcactgtggtgcaggatgttgggggtgggagggTGTC--TTACATTGGGAGAAACATTAt------ccactcaattttgctgtgaagctaaaactgttct-------------tttaaatgtttat-------------------------ttaT-GCTACAACCAggagatagttcgggggcaaacggcaagctgtgtcaa---cgtgaggcccaga-----gtccagatccccagtgcccacatagaTGTTAGGTGGATATGGCTGCCTTCTTAGctggctcgattaggtgagctctgggttcaag----------------------tgagagacgttgcctctg--acggcaagatggagagagaGAGCAGGGGTGTACCTAA------------------CACTTGTCCAGACACGGAACCA----TGCAGACAAGTTTATACTT------------TAAAATCATGAAAATAGATGTAAAAGTGTGCCATCCCAATGAACAACC-----aatgacctatttcacatccttttccccactataaatctttgaaagtcagcacatactttata----cagcat-atctgaatttggactaaccatttttcaagtgagtaacagctgcacgaggcagctgattcccacatagcaaagcAGGGGACTGG-GAAGTGGC--TGTGTGGGATGCTCTGCCAGGA-------CCGTCCTCTACTCTTCCTAACTCCCCAACTCCGGAGGGCAGC--ATTGCTCCAAGCCTTGTACA-----AAATGAGGACAAACTGCTGTTTGTTCAATAAAAGCAGCTTCCAAGCCAGTCTCCAAGCCCAcggtggctctcagccttcctaatgcagttcctcgtgctgtggtgatcccagccatcaaattacttttgttgctgcttcataactataaacttgccactgttatggatcataatggaaatatctgttttcagatggtcttaggcgaccctcgtaaaagggccattcaacacccgcaagaaccgcTGTTCTAAGcctttccaccaagattgctgtctctcagcccctcatatacaaatatttggcagccTCAT-CCTGTACCC-CCACCTCAGTTCAGACCTACCACAGATCCACAGCAACCATTTTCTTAGCAGAGCAACACGGAACGTTGAGGGCAGAAGGGCTTGGCTACATCAGAAATTCTGGAAA-----ACGACATGTGTTGCTCATTAAATAAGAGAAGGAAATAGGAAATGTTGCCTCAGTGCAAAAGATAGAAAGTTCTTCCAGGTTCTACATACCGCGCAAATAAATGAACATTTTATTAAAATGAGTGCTGATTTAAATGCTTCTTAGGAAATAGGTACTTAAGGAAAAATAGCTGCTGTCAATCTAGAA-TGCATAGCTAGGCTCTGCCTGAGTAGGTGAGGGAGATTTATATTTTCTTGCAGCTGGGAACATTA----TTTATATTTCCTC-CCACATCTCTGGAACTAATGTATTAACGTCTCTATATACTATGATGTATTATAATCTACTCATGCTGGAAATGCTGTTACTAAGCTGTGGGCGACCTGTGCTCGGAAAAGTTGGCTGTCGTCATCTGAATTAGAAGAGATGCTGCATTCAACCACAGCCTGTCCTTTTATGG---TCATTCTCAAGGTCTACCACTCAGTGGAGTGAGGGGAGAGACCGTTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTAATAGCTCTGCCAAAGGAAGGGAAAG---AAAAGTCAGAAGGGGGTTCAAGTATAAAAACAAAAGCCATGCAGCCCCCAAAATCCTGCAGACAAAGCAGAATAGTGTGAACG-GCACATGT
s HiC_scaffold_1 110905071 1871 - 233722169 gaaatgacCTAGCAAGCCAGAAATTGCATAAAGAAAACCTGAATGTATATTATTAAGTGAAAG--GAGGCAATCTGAAAAGACAACATACTACATGATGCCAACTATATAAC--TTTGAGAAAAGGCAAATCTATAGAGACAGTTAAAAAGATCAGTAGTTGCCAGCAGTATGAAAGGacggagaaataaataaataaatgcagcacaataataaataaatgcataatactataatggttgatacatgtCATGCATGTgtcaaaa----------atatacattaagagTGAACCCTAAT----ACTATGAAATCTGAGTGATAATATGTCAATTTCAATTCAATAACTATAACAAATGTACTACTCTGGCACTGGATATTGGTGGTGGTAAGGCTATAACTACGTGGGGAGAAGAGATACGTGAGAATGCTCAAAATTGCTGTAAACCCAAAACttctctaaaacataaaaattattaaaacttataaaaataaaaataggttaaAATAGATTATCACTTCAATATGTAACCAGTATAGACACGAAtgagtgtcttagtcactttcttgtccctcagacataatacctgacacccagagcttaaat-gaggagaggtttattttggcccctGGTTACCGGCCATGGCCAGC--AGCCCAAGGCAGAAAAAGTATGACGGAGAGGCATGGTGGAGGGAAGCTACTTGAGTCAtggcacaggaagcagagagcacaggGAAGAGCCCGAGAGAGAGCTATGTCCTTCCAGTTATACTTACAGTGATCAGCTTCTTTTGATCAGGGCACACTTCCTAATGGTCAGTTATATCACTAcatgaggctctggagagag--ACTCCAGAGGTAAACCTTAACAAGGaggtattttacattcttttttccaTAATAAATCTTTGCAAACaagcatttattttacattgacAGTATTATCTTAATGTGGGCA-------TTTAAAGTATTCAAATGTCACAAGTGACTAATGGCTCCCATATGGGACAGCACAGGACTGGAGCGGTGGAAGTGTGCGAGGTGGCCTGGAAGGGACATTACCCATCCTCCACACTCCCTACCTCACAGTCTC--------AACCAACTGCTCCAAACCACACTCATTTATATATGACGAGAAAGTGCTTTTT-TCCTGCAAAAGCATTCTCCAAAAAAGTCTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAACCTCTCCGGCCAGGTTGCTGCCTCTTGGATCCTCAAATGCAGACAGCCAGGACCCTTGTTCCTGTACTCACCTCTTCAGT-------------AGACAGACAGTACCC--------------------TGGGATGCTGAGGAATAAAAAGGTTTATCACatcaaatttcttaaaaatatcaacatCATATATTGTATATTAA--------------TAGGAGA----------------------GAAAGAGCTTTCA-----------Ccatgcaaataaatgaaaaatatatgca-----gtACAGATTTAGGTATTTA--AGAAAACCAGTA-TTAAGAAAATAT---TGctgtcaatttaaaaatacagaactaGGCTTTGCCTCAGTGAGTGggaattatttatatttctttgccaCTAGGAACATtagttatttatatttgttaGCAATGTTCCTGGAACTAATGCATAGACTTCTGCACACACCATGATATATTATAATCTGTTCATGCTTTAAATGCTATTACTGAGATGAGGTGCACTTTTGCTCAGAGAAGTTAGC--TCG-CATTTACATTAGAAAAGGTATTATATTAAATCATAGCCTCCCCTTTTATAGTCATCATTTTCAGATTTTAT--CTCAGAGAAGTGAAACAGAAGAC-----------------ATTTATTTGCTTACCATTTTTAACAGC-cttccaaaagagagaaaaggcaaaaaaatagaAAGTGGTCTAAGTGTAAAATACAAAGATGTG-ATTTCACATTATCCTACAAAGAATATAGCATGACAAAAATGTGTACATGT

a score=101215
s chr3           100918557 5369 + 160039680 [encoded data, 6087 characters]
s HiC_scaffold_1 110914384 5489 - 233722169 [encoded data, 6087 characters]

a score=21327
s chr3           100928849 1271 + 160039680 tccggGTTACTTTTTTAGAAAACAGTGCTtgccagccctctgttactgtgataaaacgcctgagctatggacttgaaagcaagaaaggtttgtattggctcatccttctaaggag--cagtttcTGGGTCTTCCTTTCAAAAGAGGGAGCCTTAAACCCTGGGAAGTCTCCTCAG-TACCAGGCTTCCACCTTGGCTTTTCTCAGACCACGTGGTTCTTACGTAAGGACAGGAAAATGACAATACTTAATAAACATTTGTGTTTAACATAGGAGAGAAATTAGAATACATAAGTTACCCTTGAAGAAAAAGTGG--------AGAGTTACTAACTTGAGACTCATTAGCCACACATATTAAGGCTTTCTCTCTTCTGTGTATCTTCATGGTCTATCACTAAGAGGCTGG---CGAATGGATATGCGTCCAGGGGTAGAGGGAAAGGTGCTAGCTGTGTGTGGAGACACG------CGTGGCTGAGGAGCTGTAGAAAGTGCCACACGTGTCCTTTCTGGTGGTTGTGGCAGCCTAGTGACTACCC-CTGAG-CTCCTCAAGAATTGAGACTGAGGCTCCCAAAGGCTGCAGTCAGCCA----------GAGAT---GCCGGAG-------TCAGTGACTAA-------------------------CGTGGGTTCCACTCC------------------------------------------------------------------------CACTCCATGTAAGGCTGGAGGGAGGCAGAATCCATGAAGAGA--------------------------------------------------------GCCAGTTCACATGTCACTGAAAATGGGGCTGACCTCTGGAACTGTCTTCAGTGCCCAGAAGCTCAGTAGCCCCATGCATAGTCACCAACCTGGTGGAATGTGACTCTGGCACTTAGCAGGAGGGCTGCAC-ACATCC--AGGTCCAGTTTAACTGCACTGGTATTTGCCCCCATCTAACAGA-AGTCCCTACCCAGATATATTCCTGTCCTGAATCCTTGTCCGTCCTTGTGACTTTGAGCCTGCCTACCATGCACTGATG----GCTCAGCGTGCCCCATTGATGTCTGATTCTTTGCTCTTGGCCTGAACCCCTCAGGGCTCACCATTCAACGTGACCGTGAGGAGGAAGCATCGGCCACATCCGGGTGTGTTTCACTGCTGCACCTTCTGCTCCAGTGGAGGACAGAAAGCTGCCCGCTGTGCCTGCGGAGGCACCATGCCGGGTAAGCATGGTCGGTGGCCTCAAGTCAACTGAAGCTAGCATCTGGGTCGGAAACAGCAGTCTTATGATGTCATGTCCTCAAGCCCGCAGGCCCAAGCAGCAGCAAGCAAGGGTCCGTCC-CTTTGCTGCCTCACAGGTACTAGGTCAGGGTGTTTGGACTGAGGCTTTTCTCAAAGAA
s HiC_scaffold_1 110920859 1321 - 233722169 TCCAAGTTGGTTTTAATGAATTCTGTGGCAGTCAACTTTttattactgtgataaaatac-tgGGGTattaa---agaaggaagaaaggtttattttagataATGTTTTCAAAGGTTTCCATTTATAGTTATTCTTT--AAAAGGAGGGGAATTTAACACTGGAAAGGTACCTAAGATACCATGctgtctattttctgtttttcaggtgATGTAGCTCTTCCATAGGGATAGCCGTGCTACGTTCATGAATGAAAGTT------------AGgatgaaaatcagaaaataaaaattatccgTGAAGAAAAGGGGACATTTGGAAGAGTTACTAATCTGAGAATGATTAACTACACACACTTAA--------CCTTCCACGTTTCTTCACAGTCT--CA-GAAGTGATTGGTTTCAGATGTGTCAGGATGCAGGGACAGGAGAAAAGAGGCTAGCTCAGTCATGAGAAAAGGCAGTCTGTGGCTGAGAAATCGGGG--------------------CCTTGTGATTGTGACAGTCTACTAAGGCCCCTCTGAGATTCTTCAAGAATTGAAATTCAGAATTCTAAAGATCAAAGTCAGTCACATGAAAGTAGAAATTgagctggggctttagctcagtggctcaggcaTTTGCcggacaagtgtgaggtcatgagttcgatccctagtaccaaaaaaaaaaatgacagtttgAAAGTACAAATTGAGATAGCTAATGTATCAGTCTACATACTTTTCACTCCATGCAAGGC--AAAGGAGGCAGAATCCAGTAAGAAGCAGCTTGAGAAAAAACTTAAGGTGGTGGCATggcctttctgtctttctgaccTCTTGCTGGAACAAGGCTCGCTGAAAATGGACTTGGCCACGTGGGACATACTTAGTGTGCAGGGGGTCAGT-------TGCATTGT---------GGTGaaaag-----------catggcagaagggcagtgTTGCCTCCTTGGTTCCAGTGTCTTTGTGGTGGTGTCCGCTCCCACCCAGCTGAGAGTTCTTCCCCTGCTACCCTTGTGTC----ACCAAAGGCAGGCCCCGGGATTT--AGACTGTCTAGCCTGTATCCATGCTCTGCACAGCCCGCCGACTCAAGGTGTTGTTCCTTGCTTTAA-------------AGGGCTCCCCCTTCACGGTGACCGTGAGGAGGAAGCACCGCCCACACCCAGGAGTTTTTCATTGCTGCACTTTCTGCTCCAGCGGAGGCCGGAAAACTGCACGCTGTGCCTGTGGAGGCACCATGCCAGGTAAGGA-----------------------------------------GGAACC--------------TTCCTACTCTCGGCCCTCTCTGCC--AGCAGCAAGATCCGAGCGGCAGTCCTCTCCACTGCCACGCAGCCTCTAGTTTAAGCTGTCTGGACTGAGGCTTTGTTCTAGGAA

a score=5350
s chr3           100930589 241 + 160039680 TGTTCTGAATTGAAATGACAGGCTTCAAGGTTCTGAGTTCTTTTGATACAGTTTACCAGTCC-ATGGGCCTTTTGACCAGAATCTGAGATTTGTAGATTCAGTCTATACCTGTTCTAGCAGTCTGAGCACTGTGA--AATATAGATTCA---------CCCAAAAATCATGAGGAAATTC------AAATGGGGAGGATCAGGGGGTAGATGATTGAGCAACGTCTCACTCTTT-------ATTTAGACATCTGGGCAAGAGATCC
s HiC_scaffold_1 110922229 258 - 233722169 TATTCTGAACTGAAATGGCAAGCTGAAAAGTTCTGAGGACTTTTGATAGAGTTAAGCAATCCTGTGAGCCCCGCG-CTTCTCTGTGGGACTCTTAGTCTCGTTGGGTACCCTTTC-AGCAGGCTGAGCCGTGTGAAGAATGTAGACCCATTGTAtctctttaaaaactttaaagaaactCCAAATGAAGCAGGAATGATTG------AGCTGATTAAACCAGCTCTGGCTCtttgaggggaaggtggaaactCAGGCAAGGGatcc

a score=29967
s chr3           100931066 1772 + 160039680 TTTCATCATGTCTTTATTCTAATGGTGGCCCACAAAATAAGCTTTTGTACCCCTCCGTGTAACCAATTTAG-------CACGTCTCCTTTTCCATTAATCTACCCTTTTATTTTCGTGTCACTCACTGCATATAGTTAAGATCCAAACCAGT--ATTTAACAGTTGAAGGGCAAACTAGTTCATCTCCTGGTTGCATTTTGGACAGTT-----CTGAGAGCCTGG-------------CCTGGCCATGGCTA--CCAGATAGTTCTGATTACAG-TGGACTGAACTCGGTAGTTTCTTTGG----------GGAGATCTTGACTGCTTAGGTCTGAATGTTGCCAGGA-----TTAGCTTTGT-ACAGCTGGACTCTACTTT----ATGTTGTTCCCCCCTTTGTATTATGCAGGTGGATACCTTGGCTGTGGCCACGGACACAAAGGCCACCCGGGCCGTCCACACTGGTCTTGCTGTGGGAAGTTCATTGAGAAGTCCGAGTGCTCGTTCACGAGTGGGCAGGGCGCCCCGAGGAGTCTGCTTAGGACCGTGGCGCTCTGATGCT-TCCTGGGGACAAGTCGGGCCAGGTAACCCTGAAGCTAGCATAACTTCAGCTATGCAGAGAA-CCCAGAGCTTGAGTAGTTCCAAAGAGACTGACAGAATTAAAGACGAAGTGCTTTCTCTAACATCAGACTTCAAGTGCT-TTCTGTG----------TGGGCATCTCTCGTGTACCATGGCGGAGTGCAGGCCTCCCCTACACCGCTCCTCAAGGCAGGCTG---CTGATCTACTCCACGGAAAGCTC--TCCTGTTTTATACGGGCATTGAGGTGTCTGTGCCATGGGACCAT-GAGCTCCTGGAGCAGGGAGGACTTTA-TGCCTTCCTTTCCACTGTG---TTGCAGCCTCTCCGGTTTACC----CCGAG---------------CTAGAGTTTCAGGGCTTCTCCTGGAGGATGAAAC--------------------------------------------------------------------------------------------------------CCCTCTGGCCCA--------------TCATTTGTTTGTTGTATACTTTCAGTGG-TTTCCTAGTACACAGTTTATGA-----TGATTATCACGGTTTTGCCGTCTAGATGAGCGCCC-------------------GAGTGATGCTC--------------------ATGTG---TAGGCACACAAGTAGACAGT-------AAGGAGGTACGGTGTGGCAAGAGCGCAGCCATCTGCTGCAGTTCTTTACATCAGATGAC---GGCGGGTCCTCCATCCACACAGCTC--TGACTT----AATGGAGGGCTTTCGCTGCCCTCTCTACCCTGCAAC--AGCTGAAAGCACTGAC-TCTGCAGGGCACCCC-CTAGCGGCTACAGGATTCTGGGAGGAAGACTTA----GTACT--CCCTCAGCCCAGCCAAGGTCTTCCCAGTAGA-GATTTTGTGTT---TTCTGGGATTCTTGGTTTCTTACACAGCAGTAAACTCACAACATATGAAACTGAATTACTGAAGTTTGCATTATAGGATCTCATAGGGAGT-GGTGACTCATTGGAGGGGC-AATTGGGTAAAGGAAAGGAAGCGAGGCACTTAGATGACCACTGTCA---------GGTTTCACTTCCTTCTCTTAGCCTTTAAGA--TAAGATACATTAAGATAATTAAGACATTAAGATACTTtcttcattttcttc---------gaacattccccttgagcccctttctggaagc-aaaatctgatgttcccagaagacaacactgcccctctccccctc-agctggttgttgtttgctcctcactctgtctgttcccacccactcccagccacaccctgagccaggtcaggtgtctactgagcttgccatggctgctttgagatcactGGTTCTCAGCCAG---------GCAACCCCACCTCCCGGGGGC--------GTGTCTTACAGAATCTTGGGGATA----TGGGTTCTAGCAGCATTGAGTAGG
s HiC_scaffold_1 110922503 2004 - 233722169 ttctaccTTGTCCTCACCCTAATGGTAGGCTATAA--CAAGCTTTTGTACC--TTCCAAAAACCACTTCAGGATCTGCCTCTTTTTCGTTTCTGTTCATCTacccttc-attttcatttcaatcATTTTATA-------AATCCAAACCAGTTCATCTTACAGTGAAAGTAAAGACTAGCTCATCT----AATTCAGTTAGTACATTTTACCACTGAGAGTTTGGGTACGCTTAGCTGATTTGCTGTGATCAGTCTTGAGAGTCCTCCTGACGGATGAAGTCAGATAGCTTGTTCCTCTGGAGTTTTGCTTGGATATTTCATTCCCGTGAGTCCCAATGTTAAGAAGAGACAATTTCCATGGTGACGGCTAGAATCTACTCCtagaattgtttttctcttttcttactaTGCAGGTGGATACCTAGGCTGTGGCCATGGGCACAAAGGCCACCCAGGTCGTCCCCACTGGTCTTGCTGTGGGAAGTTTACTGAGAAGTCTGAATGCACATGCACAAGTGGGCAGAACACACCAAGGAGTCTGCTAAGAACTGTGGCACTGTGATGGTCTCCTG---------CGCCTGAGATCACCCTG------GTAAAGCTGCAGATTTCCAGAGGACCCCAGAGCCTCATTGATTCTGA--AgactgataaaattaaaaatgaagtgcCTTATCTTACACTAGAATTCAATTGCTGTTCTGTGAGTTACTAACTGGGTGTC-CTTGTG----ATAGTTGAGCACACATTTCTCCTAAA-------GGAAGGTAGGCAGTGTTCTTTCTATACCATAGGAGACCCATTTCTATTTTATACAGGTATGGAAGTGTCTACGCCATTGGAAATTAGAGGTCATAGTGGGTgtagtaatttattttcttactttctgatatatttttttaaccttttaaatttATCGCTGCTGAGCATGATagtacacccctgtaatcccagcact----caggaggctgaagcaggagacttgccatgagttgaggccagcttgggctacataagtgagttcaagaccagcctgcaccacACAGCAAGATccagcctcaaaaaaaaaaaaaaagtatccctGTGCTACATACTAATGAAAACCTCCCTTTTTTGCTACTGCATTTCAGTGGATTTACTGATGCAT-GTTTGTGACTGTTTTAATGTGACGG---TGATGTTTCAGTGGGTGGCCCCTCCTTCCTTATACATCATAGTCATCCTCTGCGTCATACCCTAGTCGCTATGTGGCAGAGGCACACAAGTAGAAAGCTAACAAAAGGGAGGGACAATGAGAT-GGATCTTATACATCTATCGCAGTTC-TCATACTGAATGATCTACATAATTTCACTCTCCTTACCTCTCTTTGGTTTTTAAAGTGTaatctttgtttttgtctatATATCCAGAAACTTAACTAGCACCTTTGATATTTACGCGGTGCCTTGTTAGCTGCTAGAGAATTCTGGGGAGAAGACTTACACTGCACTGGTACTCAGTCCTACCAAAGTCttctctttatattattttgcGTGTTATTCTGGGACTCCTAATTTCTTAAGTAGTAGTAAACTCAGCgtggattaaataaaattactgaaatttgTATTGTTAGATCCCTTAAGTAGTGGGTAACTCATTTGAGAGATGAGTTAGGTCAGGCAAAGGGAGTGAAGTAATGAGATTCTGACTGTCACATCATCATGGAATAGATTTCCTCTTTGAGGCTGACAGATGTGGGCTACACTGGAGCCAT---AACACTGAGATATTGTCTATATTCTCATCCTTTTTCTGGAGGCATCCCCTTCAGTCTCTTTCTGTAACCAAAAATCTCATCTTCCCAGACAACGTTGCTGCCCCCATTACCACCGAGCTA-------------------TTTCTCTGGGCCCTTACATCAC-----------------------GGGGCCCTTTTAGCTCATCATTGCTGCTTTAAGAATG-TGATTCTCAACCAGGAGTGATTTGCTCCACTGCCTCCCCAGGCTCCCAAATGACATCTAGCAAAGTCTTAGAGACAGTTTTGTTTGCTAGTAGTATCTAGTGGG

a score=23391
s chr3           100932882 1968 + 160039680 AATGGAGCATGCTTT--GCCTCCCTGCAGTGCCATTTTCAT--GTCTGATGAGGCGTACATCCTGCATTCTGCTCAATGGTTCCCTCCCAGGCTCCTAAGCTCGACCTTGCACTGTGTTGTTGTCAGTATGCTCAGTAGAGTCAAAGAGcagtccttccattt--ctcgcccctgtttcctc----ccgtgacctccttctgactt-aaataccacttagactc-ggtgactcccaagtcctcttc-aggtc-actctctagatgattatgaggtccagtgacttacgtcatcacatctcctcttatgtgtacagtaagcccctcattcaaatttaaatggct--------cccagtgtccagttctcacttgctcctgcctgtcatcaccaaacagcttctcctggagtcctctccacactttaaaagagaagcgtctgtcctt------aggtggggcagcct-ggaaac-tccttg-----tgtgtcacac---------------------------------------------------------------------------------------------------------------------------------------------catatccaaa-ccactggtaactcctgtcaacctcactttca-----------ctgactcctgctctctgcgtccattgctaccatcctggtctgacaag-----ccgagactcccaccagaa----------agctttgcctatcttctcgc----cagcctgcttcca------cATCAGGTCAT------TCTGCTCGGTGCCTCCAGTGACCGCTCGCTCATCTC-----AGAACAGAGGCAGCTCACCTGCTTCACATTACCATGTG---CCAGCGTGGTCTGATC-CAtggccttctc----ttcctacccagctccaccttctgtccaggcacagtggccctgccggccgctgctcaggctc-agcagcctcttcttggagcctttatagtaa---tgggccttctatctgacagtccttctcaaagatgcatcataccctttgacttcaagtttctgctctagtgtcaactattgtcctattagtgaggtttctaaccatcctgagtaaaacagaagaatcatacc----caggaggaggcatc-ccctgcccgg-cttcatcaccagctg-acgggtgatgtattgtcttacatctg-ctgtactggactctgagctccgcgagggcagggagctggcattcagtaactgt---attatccccatgcaggtcagactttggctcacagtagagacaaatagtatgttgaatgaataaaAATTCAAGTTGGTAGAGTTTT--GTTTGGCTTTACTTAGTAT--GTTTTCAT--GACTTCCATTTCCCTAAACCCAAGTATATCCCATTGAACCAAAGACCACTTGGGAAA-AGGTCTTAACCGCCTATCAGACTTGTTGGATACAAGTAA---GCACCCAAGGGACCAGCCTTGAATTTTCCAGTTACCTCAGACATCCAGGGAGTCTTGTGCCCTGAAG---TCTCTGGAATTACATCATCTTTCCCCAGGGGTCTTGAGTCAGTGCAGCAGA--GCCAAGCACAGCTCGAGAGTCTACCTT------------GGAGAGCTTGCGACAACCGGGCAGTTTTTTGTAGATGAAGCTGCATCTCTAGAGGAAAACTTTGATCTCAGTGGGGCATCCAGGGTCTAGCTACTACCATTAAACAGGGAGGAAGAACTCAAGGTCGGAAGCACATACTTTGGCTGGTAAC--AACTCTGTT---AATGTTTAAAGTCCCCGTGGGCGGTGGTAGGGGTGCCTGGGCTCTTACTTAGTTTGAACAATAATGGGGTCTTAGCCCAATTTAGTCCAGATGCTCTGGCAGCTGAAAAAAAACTATGAAAAGGTCAGAGTGATCTGAGAACCCCCAAACTCTACGGCAAGGAGAA-------GAGAAGTGGAGTTTTTAGGGAGGATACAAATGT------GTCC-------------------TCATGTGCACG-----CTGAAGATACAGCTTCATGATGTAAGCGATGTGGCTGGTATTACGGCTGAGAAAAAAAGCGACAAATTCGAGTCTTGGTCCTGTGGGAT-----------ATAAACACCTTGGCTGTCTTGGCCA----------GCCCACCCCTCCTGCTCC-----CTCTCTGCAAT--CATTGCTCACCCTTACTCCAGAGGATGCACAC-CTGTGGCAGGCATGG
s HiC_scaffold_1 110925738 2166 - 233722169 AACAGAgcctcccttcttcctccctgAACCATTGTCTTCATTTGTTTTATGTGGGAT--------CACTCTTCTTAATTCTCCTGTCGCA-----------------TTGTTCCTTCCTATTTTCTACATATCAGAGGGAGCCAAGGGTCaggttttgcatttgttttttccATGCTTTCTAGATGACCTGATCTTACCCTGACTTTAAATGCTATTTATACACTAATGACTCCCAAATTTACCTCTAGGTCTAGTCTCCATAGTATTCTG---TCCAATAGCCTA-------GCATCTTCCCTTGTATGTGTAACAGGCACCTGA---AATTGAAGATGTCCAGCACAGACTCAGTTTCCAGCTCTCACTTCTGTTTGCTCACAACCACCAAAT-GCTTCCCCTGCAGTCATCTTCTC--TTTAAAAGGAAAGCATAATTACTTTCTTAGAGATGGAGGAGTATAGGAAACATGCTTAAAACCTCTGTCACACATATGCAAATCCAGGGGcttgaggtttagctcagcggcataagcacctgccttgcaagcaggcagtcgtgagttcgatccccggtaccgataaaaaggaaaaagacaaaaaacaaaaacaaaacaaaacaaaaaaaaaacacatatgcAAATCCATGGGCAAATCCTATCAGTGCTGCTTTCAGACTCTATCTGCTGACCAGTGGTGTCCCC-TCCATTGCTATCATCCTGTTCTCATGTGAAGTTTTGCAACCCTCTTCTAACTCATCTCTATGTCCCTACCTTATTTCTCACACTACATTCTTCACCCAATAGTCCTTCAAAATATGTCAGATCTTATCAGC-CCTCTACTTAAAATCCTCCCGTCTCTCAATGAAACACAAGTCAATGACCAGCTCCACATCAGCATGTATGACCAGCATGATCTGGACGCCTGCTTTTCTCCCATTTCCTATCCACCTCCACTGCTGTTTCAGCCAAACTGGCC-TGCCTGGTCCTTCTCGGACTCCAGCTACTCCATCGTAGGGCCTTTATAATCACTTTGAAATGCACATCTCTCAGCTACTTTCATA-ATTCACTGCCTGCTTT--CTTCAGCTTTCTGTTC-AGTGCCAACTGTCATCCTATCAGAG-GGTTCCT----------------------GCAGCATACCACTCCAGAGCTCGGTATCACCCTGCCTGGTCTCCATCACCACTAGTATATGTAAT---CTGTTTAGTGTCAGTCCTTTCGAGACTGTAAGCTCTAGGAGGGCTGGAATTTGACATTTAATAACTACTACATTAACCCTGTGTAGGACATTTCTTGGCACATAGCAGACTT---TAATatgttgaatgaataaagatcTAA-TTGGAAGAATTTTTAGCTTGGATCTACCT-GTATTCATTTTCATAAGACTGACTTTCTCACAAACCCCAGTATTTTTCATTTAACCAGAAATCATTTGGGCAACAAATCCCAGCCATCT--CAAACACGTTG--CACAAATCACATGCACCCGAGGGACTAGTCTCGAATTTTCCAGTTACCTCAGACACCTAGGGAATTGCTTGCCAGGAAGAAACCTACTGTATTACATCATCTTTTCCCCTGTgtgtt---tttatgaataaaattgcCAAGC-CTTATAAAAAGCTTACTGTTTGTTTCAGTTAGAAAAGATTTTAGTAACTGGAAA--CTACTATAGATAAAG---------TAACGGAAAATATC--------TAAGACATTCTAATTCTGGCTAATGCCTT-------------GGAGTTTAAG------------CAGTATTAATGGTAACATAATGCTGTTGAAAGCATTTAAAGTCTGTGTGCATGTCAAGGGGAG-----AAGCTGTTCCTTGGCTGGCACAGTAATGGAGTCTTAATCCAGTTTAATCCAACTGTTCTGATGCCTGAAAGA----TCTGGTAAAGT-----TGACCTACAGAGTTCATGTCTTCAAGGTGAGAAAAAGGTGATGGGGAAGGGGAGGATTTAAGAATTCTCCCAGGGTAATGGAGTCCTTCAGAAATTGTCTTAAAGTTGTGAGCATGGATGCATCAAGATGTAGCACTATGATGTAACATGTGCTGCTGGTGTTATTGGCAAGTAAAGAACCA--CAGTGAGAACCTCCATCCTCAGGGATGGTGTAACAGGATAAACATCTTGGTTGTCTTAGATaataaacatacacatataccTCTTAGCCCacctgttctctaaaatgcagTTGTTCAACTGTACTTCAGAGCATGCATACTTTGTGTTAGGATTGG

a score=13479
s chr3           100939795 660 + 160039680 ctgaaataaccaatgggtttctatggcccacattacacaagctgactgactaactgGTTTGTTAACCTGGTAACCCATCCTCAATTCCTAGCATAGGAACAA-GCCTCACTTCGAGTAGGATG---------------AAATCTAAGAC-----------TCCAGGATCATGGAAAGAGCATCACTCC------------------AGCAG--------------------------ACGAAGCTAGATGCCAAAGAGGATCTTGAGGTCAGCCAGTGTGAGCTTGGTGACAGGTCCTTCGGATCCAGAAAGGACCTGTTTTGCCAAATCTTTCTTTTTTTCTTGGAGCTGTAAGATCTTCTCTTCCACTGTCCCCTCACAGACAAACCT-AAGAGCAAATAATAAC-----GAACATCAGAGCCCGCACGGCTCACGAAAGCGAGCCTTCCAACTCCACTCCACTTCGCTTTCACAGAAGACTGTCT-----GTTTCCCTGAGATAGTGGAGAG--TAGGGAATCCACACAACTTTCACTGAAT---ATGTCCATTTAAACT-----------------------------------------------------------------GCAGAAGGTATTTCTATCTAAAACAAATACAGAGGCCCAACCTTTA-CCCAGACACT-TATCCTGACAAGGTCAGAAGGC-------------CTTCTGACAGTGTCTGTGTG---TATTTTAAGTGGAGCATTTAACTTCTTAGCTAATCCATAGCACAGCCAGGCTTTTCAAATTGAAGAAGTCACCCTGCTGTCACTCA
s HiC_scaffold_1 110931915 807 - 233722169 CTGAAATAACTGATTGGCTTCTATGTTGCTCA--AAGCAAGCTGACTGATTAACCAAATGTTTA---CAATAACCCATCCTCACTTCT--ACAGATGAGTTATGCCTCATTTTGAGGAATATGTAAAGTTTTTACGTGAAATAGAAGGCAAGAACAGAGCTCAGGGATCATGGCAAAGGTGTTTTTCCCAGATGCTAACTCAAATCAGCAATGGCACTCTTCTGCGCCTTTAAAGACAGGAGATTAGATGCCAAAAAGGACTCTGAGGTCAGCCAAGGTTAGCTTGGTGAAGGATTCTCCAGATCCTGATAGAACTTGTTTGgctaagtctttctttttttcttgaagttgCAAGATCTTCTCTTCCACTGTCCCCTTACaaacaaatctgaaaaataaataaaacctatcaGAAACTCAAAG------CAGCTTATCTAGCAGCACATTCAAGC----ATCTACTGTATTGTATTAATGTGTTTTCTTTAAGTTTTCTCAGAATCAGTTGCAAACCTAGGAGATCCAAACTGCCTTGATTAAATATaatgttcatttaaaatatgtgactcggactgactttttttttcattcgGAAGCTAGTGTAATTAGGAAAGCctcaaaataagcaaaagataTTCCTATCTAGAAAAACTATAGAGACTTAGCTTTCCTCCCAAAAGCTCCGTCTTGATA--GTCAGAAAGTGTCAAAGATGAAGTTTCTGTCAG-GAATATGTGAGCTAGTTCAAAT--AGTCTCTTATTTCTTGTCCAGGTGACACTCAAAACAGCTTTTTCAAACT-AAGCATGCGCACTATTGTCATTCA

a score=52092
s chr3           100941494 4826 + 160039680 [encoded data, 5446 characters]
s HiC_scaffold_1 110934889 4901 - 233722169 [encoded data, 5446 characters]

a score=27667
s chr3           100947235 1159 + 160039680 aaTGAAGGCTTTGGGCTTCTCC-TGAC-CAAGTGAGGCTTTA-----AGACTAAGGGGGATCTAAGATCTGACCTTCTAACTCTCCTCTCATAAGCTCTTCCCACGTGCATAATGTTCAACACAGG---------GAGAAAGGTAATATCTGTCATCAA-GCACAGGTGACAAAAGTACCTTGGTGCTCCTTCGTGTGTCATCAAAAAGCTCCGCCTTGAAACATGTGCCATTAAGGCTAACCGTGGGTGATGGCTCTGAGACATCGACCTTGGACAAGGTCAGAGCACTGAGCTGTTCTTCCAGGGACAGGACAAGGCCTTCGCTCTCCAGTTCTGTGGGGTCCAGAGCCTTGGAAGAA---AGAGAGGAGATGGGAACA-CAGGACAATGGAGGTGGCAAGCCTTCGTACCTGCTGA-------------TTTCCAACAGTCGAGAGTAAAATGACTTAT-CTCAGGCACTACAGAAAAGACCCTGTGTAAAGCTTGA---CGCAAGTT------------------------------------------AAAAACCTGCTGACGGCCTACATGGTCATTCTGTTTTCAGAGTCTAAGCTTCTGAAGTGAGCACACAGTTAATTA-------GAATCCTAGACACAC--CTGCA---CCCAGTACAAAAGCACCTC--------------------CCAGTGTG-------------------------TGCTTGGGTTTTCATAC----------ACCCCAGAGTACTGAACACCAGTAACTCCCAAAGCTTTATGACATTCTGAGATAACAAAACACTCACAAATGTTTCCCT---TAACAAAATGTCAGTTGTGA-TCTAAAAT------------AAACAAACAAAAAAAAAGTGTATCT-----TGTCATGGAACTCATGAGCATTAATAAACATTAATATAAAGTAAAGCAGAAGAAATGCGTTTCCTCTCCATCCCATAAAAG---------------------AGAGCTGCAGACCAGCCTTTTCCCTGACGCA-------GGATCCCGGCTACAGCCGACTGTGGAGATG--ACTACAGACGGGGCGTCTCTCACCGACTTCAGCAGAGAAAGATGGCAGCAGCACTGGCGAAGCCGCAGAAGCTGGGACAGGACATGGACGGTGCTGGGTCTTTGGGAGTCT---GCCGCAGGGCAGCCCTGGGACACACTGGATCCAAACTCCTGAGCCACTGGAG-GAGAGAAGACAAGAGAGGAGACAGTACAAGATTTAA-AACAGGAGCTCTGGGGAAGAAGCGGACCTGAGTCCAGCTACTTAAACAGTTTGACCTGACACTCAATAACCTTG
s HiC_scaffold_1 110941540 1309 - 233722169 AATAAAGGCTTTTGTGTTCTTTGTGATACAATGGAGGCCTTATAAAAGGACTAGGGGG-----AGAATCTGACCAACCAAATG-------AAGGGCTc-------------------caacacaggaaaatgcatgagAAACCAAAGCTCTGTACTAAAAGCAGAGG-GACAAAGGTACCTTGGTGCTCCCACGTGTGTCTTCAAAAAGCTCCACCTTGAAGTATGTCCCATTAAGGGAAACAGTGGGAGATGGCTCTGTGTCCTGGAGCTCAGACAAAGTCATAGCACTGAGCTGCTCCTCCAGGGACAGGACAAGGCCTTCACTCTTCAGTTCAGCCGGGTCCAGGGCCTGGGGGGAACATAGCAAAGGGACAGGAGCAGTTGGACAGTCCTGGCAATAAGCCTTATTAGTTGCTGATGAGACTGATTGCTTTACATTTGAC-AGAGTAAAATGTCTTGTACTTTCTCTTTAGTAAAAAAATTATGCTTAATGTATGATCGTGCAAGTTTTTTCATTATCATAAAGACAAACTACATGACAGAATTTTAAAGAGAGCTTCCAAATGGATTACATGATCATTCTATTTT-----TCCCCCCTACTAGAACAATT---CAGTTAGTTAAGCTATGGATAGCCAAATACATTACTGCAGCTCCTAAAATAAACACTCCTCTTAATTTTGGATGACTCTATCCAATGTAAAGGCAACGTTTCAAATTATAAACCTACTTGAGTTCTCATATCTAGATCTAAAAACTGTAATACTAGACAACAATAACCAAATTAGTTTCATTATATTCTGAAATATCAAAACATTCACAAGTGGTTTCCTTTCTACCAAAATATCATTTCCCATTCTAAAACAAAGTTTacttaaaataaacaataaaagtacATTCCTCCCAATGCCATGGAAATCATCATGATTAAGGAG-ATTAACAGAGAGTACAGT--AAACAAGCCCCTTCTTATTtaccctacaaaaaaaaaaagaaagaaagaaaaataaaactcccCAAAACCATTTCTCTTGATCCAGCAGACTGGACCTCAATTGCAAGCAACTAAAATTATGGTGCTACACTAAGGCTTCTTCTCACCGACTTCAGTAACGAAAGATGACAGCAGCACTGGCGGAGCCTCAGCAGCTGGGACAGGATGTGGACAGTGCTAGATTTCTGCAGCTCTGTGGCCACAAGGCACCCATG---CTCACTGGACCCAAATTCCCGTGCCACTTCCGAGAAACGAGATAA---AGGAAATAGGACAGGatttaacaaaaagaaatctgGGGGAAATCAGGAACTAAGTGAAGCTATTTTA--AACTTG-TTTGAGATTCAGTAACTTTG

a score=90914
s chr3           100948847 4440 + 160039680 [encoded data, 5066 characters]
s HiC_scaffold_1 110942873 4575 - 233722169 [encoded data, 5066 characters]

a score=20085
s chr3           100953913 1495 + 160039680 CCCAGGGCTTACCAGGGAATGTGGCTGCCACCTTAGGC----AGCCCAGGCACTGCAAGCCCCTCCTACTGCAGCTTTCGCTAGGAAGAGTGACTGGCA-ATGGCAAAGTGAAACCACTAAACTCTGAGGTGTGTTTGAGCGCAAC---------CTGCCTGACACTTAAGACTGAAAACTGTCCTCAGTCTCCACCCATATGACTAGCCCCA-------AAGAATCGGGCAAGCAGAAAGACAAACGGGCTCCCTGTGTGAGTTGCAGACACGTCCAGGCACTTCC----------CACTT----ACTTACACTTTTGCGTGCCGACTCCGGTTTGGCCCATGGTAGAGATAGATTCTGAGTCTGTTGCTGGTTACACGTTTCTCTACTTCGTTCTTCCAGTGATGGATCAGGGAAGCGGGGCAGACGATCAGTGTTCCACTGGAAGTAAAGACAGAGGAGTCTAGAGG----------AAGAAATCAATACCTAGTTACAGTCGCTGAACAGCCTTGAACATGA----------------------------TGACTTTACCCCTTCAATCAGTACTTTTAACTACTGGT-TTAGTTCTACACAAAGC---AAACAGAATAGAAAACGGAAGAGACAGTCTTTTAAACCAAA-----CAATTATTTATT-------------TTAGAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACAGGGAGGGA--------AGTGGGCAGTGTGTGACC-CAGTCTAAAAAGG-AATGCTCTTTCA-CGTGGCTAGAGGTGGAAGCAGGCCCTTTCCTAAGGACTCCTGAGATGATTCGCTACCAGGAATTATTGTTTTGTGTTTTTCTATATAAAAATGTAACAAATTAC---ATTAAAATA-TAAATACAAATTGCTATGCATTAAAT-GAGTAGAAAGAACTTCTCCTAAGAGAAGCAAA---TGTGATTAt-------tttaaaagattttttttaattatgtatacaatgttctgcctgcatgtatgcctgtacaccagaagagggcaccagatctcattacagatggctgtgagccatcttgtagt----tcttgggaattgaactcaggacctctggatgagcagtccatgctcttaacctctgagctgtctctccagcccTGCAAATGTGATTTGTAACCATCTATTGGCACA---CAGTATTTACCAATGTTTCTCATCTTGTGTGTGTGTGTGTGTGTTACTCCATGCAGGGTGAGGGGCCCAGCTGCAACAGTGTGTACCACAGGCCCTGAGAG-AGAGCGCTACATGCT-TCTGGCCATATAAACAAAGCAGGACTGTGTTCATGTTCATGGTAATTTACA-----CGGTATTTACTGATAACATGTATCAACATAAAATATGCATAAAGCTATATTTTTAA--------------------------------------------------------AACAAGTTAAGAAACAAA----------------TAGAATATG--------------CACCTTTAAAAAG---GTACCTTAAGTTGGATATACCTGGGAGTTTATCCCCAGCACCAACAGAAAACACTAATTACTATGCTTGGACTATCTGTTCTAGGACCTCACCTATCTCCAAAAAACTTTTTTGAATCCCAGATCAAGCTAAATTTAAATAAAACGGAGAA----GTCATTTATAA-CTGCACACCCAGCATCAGAAATAA
s HiC_scaffold_1 110947484 1773 - 233722169 cccagcactca----ggagtgcTGCTGTCACCT--GGCTCATAACTCAGGTGCCTCTGGCTTTTCACA-TGTGGGTTTTGTAGTGGACCATGACAAGGACATAGCAAAAGAACAGCATttgatctcaagatgcatctcTTAGTAAAAGTAAAAGGCTGTTTGGTGATGAGAATGAAAATCTGCCTTTGGTCTTCACACATGTCACTAGCCCCATCAAATGAAGAATCAGGAAGTGGGAAATTCACCAGAGCTCC-----TGAGCC-TAGGCAC---TGGGCACCTCCAAGACCAGAGCACCTTCGCACTTACATTTTTGCATGCTGATTCCGGTTTGGCCCATGATAGAGATAGATTTTTAGTTTGCTGCTGTTCACACGTTTCTCTACCTCATTCTTCCAATGATGGATCAGGGAAGCAGGACAGACAATTAGTGTTCCATGGGAAGTATAGACAGAAGAGTcttgaagggaaaaaataaataaatcaatatctaGTTATATTCATTAAATAGCCTTTAACTTTGCTAGGGCATTACCTCTTTTTCTTcaatctgattttatttcttcaattaatatttttaacCATTGCTCTTACTTCTAAAGAGAGCTGACAATAGACtaggaaatggaagagaaagtCTTATAAACCAAAttacttaattacttttttcctttaatagtgttagaagtcaggcatggtggcaaccTGCTGGTTATCCCAGTACTAtacaaggctgaagcaggaggatcacaatatGGATCttagcctaggcaatttagcaatacagcaagatcctgtgtcaaaatcaaaaataaaaaggactggcaATATAGGTCAGTgctgaggccttgggttcaattcccagcatcaaTCAATCAAGCAATCAGCCAGCCAGTCAGACAGAAAGAGGCTAAAGACAGTAGGCAGCATGTGACCTTAGTCTGAAAAGGCAATGCTCTTTCAGAGTGGCCGGGTTAGAAACTAGATCATTTCCTAAAG-CTTCTGAATTGATTCCTAATAgggcaatattattattcttttctgaAAGTAATCACTTCACATATTTCTTAATTAAAGcattaaatacaaatttttatgtgtcaattaaaaCACATAAACCCTCTTATAAAGTAAGCAAAcactttgaatataacaatatgcaatatattagtgttaatttcctat----tattttgtttttaaat---tctgtat------------catc----cttttta-------ttttttgttattgtgttgttttatttttaaaattaaaaaaaaaa------aaaaaaca--ccacac------------------------------------------tGGAACTATCGAGTGACATAGTGCGGGAACGACCA--------CACCTCATCTGTATGTCCAGGTGCCGCTT------------AGGATCCA--TAGAACAATGGTCATTATAGGTTCTGAGAGCAGAGTGCCTTAAACTATCTATCC-----AACAGAGAAGGA-------AATGTACATGGCAACTTACATGTGGTGTTATCTACACAGAATACctataatttttaagaatgtataaa-ttatattttaaatatataggtTGAGAAAAGATTGAAATCATCCATTATCTATCAATACCTGGAATTTCAGAAACCTAGAAAACAAGTTTCCCATATGGATGCTAAAATGTGAATTTGTGACAGATCTCCCTTAAAAAGATTATATGTTAATTTGGATCTACTCTGGAGTTTATtctcaacagcaaca-aaaataataattactataCTTATTCCAT----------ACTT------------------TTTTTCTAATTACAGACAAAGCTACATTACATTAGAAGAGAAAAACTGATCACTTATACTCTACATACTCAGCATCAGAAATGA

a score=73261
s chr3           100956018 6062 + 160039680 [encoded data, 6657 characters]
s HiC_scaffold_1 110949394 5582 - 233722169 [encoded data, 6657 characters]

a score=43281
s chr3           100962545 1630 + 160039680 GACTCACCTTCTTTTGTTTCAGCTGTGTTGTTAGGTTTGCACGCTGGGCTGCTGGGTCAGAGGAATCTCCCTTCTTGGAAACACCTGAAGCAGCAGGCATCTGTCTCTGCACACTCTGGTCAGAATGCTGAAGGCTCCCCTTCTTCTGTGAGTCCACAGTCGAGTCAAAGAGAAGTGGGGACCCCGGCCTACTGGA---------AACACCATCATCTTCGCTGTCCTCACTGCTGGAGGTGGCATGGTGGGCCATTCCCGAGCAAAGCTCAGGTGCTGCTGGTGCTTCAGGAACAG--------GCCTCCAAGTCTTGGATGGTCCCTGGAGAGGCCCCTGAGCGAGCCCCCTCTGGGTGACCTGTGCACTAGGG------------------------GCCTCCCCGTTCTTGAGGGGCTCCCTGCTGACGTGTCCCTCTTTCTGGACCTTGCTTTCTGGGTTCTGACCAGGAACACTTGGCACCAAAAGCTGGGTTTCCTTTTCTCTCAGAGTCTCTGGCTTGTTCGGGACCCCTCGACTCTCACTCTCTGACAT---GTGAGGACCCTTGGGTATTCCTTGAAGCACCTCTCCATGGCCTTGCTTGGAAGCCATTCCTTCAGCTTTCTTAGTTTTGGGCTGGAACTTTGA---TTTCTCTTGTTCTTCCCTGTCACCTCCAGACTG---TCTAGTTGCCACCAGGTCAGATGAGGGGTCCTTCTCCATCCTGCTGTTAGATTTGGGCTTCTGTTCTTTCCTTTGATCCAAGAGCTGCTCATTGTTTTCTCTCAGCTTCTTATCAGCTGTCTTTCTCTCACCTTC---TTCGACAAACTGTTTTCGTTCGAGTGTTTTTTGATTCTTGTTAAGCACCCTAAATGGGTTTCTCGGCTGGCTGGGAGAGTGAAGCTGTGACTCAGATGGCTGCTGAGGCTTACTGGTTACAGAGAGTTCTTTAGGGTTAGGATCCTATAGATAATGAAAAT-AGACATTATAATATAAAATAGGGCTGCCTTGT-ATCTAAAATGTCC----TTTTGGAGGAAAGGGAAACACAGTAAGTACAGTC-------------CGTGCCTAGTATGGCTTCTGCATTTA-AAAAGGAAAAATGCCAAATTCACAAGGA----------------------------------------------------------------------------------------------------ATCC-ACAGCCACAATGTGGATTTCT--------CTATTTACGAGTGTTG--CCTGTTCCCCAGATCAA-----GTCCCCATGTACTAC---------------------------------------ACAAGAATAGGGCC---------TCTTT--------------TATAGTCtatatatatatatatatatatatatatatataGTCT-----TTTATAGTCTAGGAACCGAGGCATTACATTTAGCTTATATCAAAATCAAGTCAATACTGATCTAAAAAAAGATGAGGCTGTTAGTC--------------TTTCTTCCCTAAGTAGGAGGATACTGGCTGCTTTTATGACACTGGAAGACATT----TGTGTAAAACAGAAGGTAAGTAATCAAACTTTGACCACAGC-AGTGGCTCTTTGAATGAGCAGCCACA----------------------AAACCCTTCAGGGCGCTTAGCGGCAGTGTGACGGACAGCAGCAATCTTACA-GACTGGGGTG--CTTTCTGT------------GGGCGGAAGACACATGGGCAATGCCTACCTGCCGCCATGGGACGTTTCCACACCACTGCTTCCCCTCCGCCTTGGTTCTAGCACATCGGAAGAACAGCCTAATGGAGTATGAA--ACAGGTAATTAAGGTACAAATGTTAAAGAGCTTCA
s HiC_scaffold_1 110955012 1882 - 233722169 GAGTTACCTTCTTTTGTCTGAGCTGTGTGGTAAGGCACACATGCTGGGCTGCTGAGTTGGAAGGTTCCACCTTGCTGGAAATCCTTGTGGTTGCAGGTATTTTTCTTTGAGCACTTGGATTAAGAAGTTGAAGATTCTCCATCTTGTCTTTGTCCATTGTTGAGGCAAAAAGTAGCGGGCTCTCTGGTTTATCAGAAGCAAGAGCAACATCACCTTCCCCACTGTCATCCTTGCTAGGGGCAGC--------CTCTCCCCGAG-AAAGCACTGATGCCATTGGTCCTTTCTGATCAGACAAGACAGCCTCCA---CCTGGG-----CCTGGATATGCTCCTGAGGGAGGCTTTTCTGGAAGTTCTGTGTAGTTGGGCCATCCTTTGCCTCTGATTCCTTAGCCTTGCAGTTCTTGAGGTGAGCCTTACTGAGATGTCCCTCTTTCTGGGGCTGATTTACTGGGTTCTGACTAGGAACAATATGAGGCAAAAGCTGGATTTCATTTCCTCTCAAAAGGTCTGACTTGTTTTGGACACCTTGACTTTCACCATCTGACCTCTCCTGAGGAGACACCGATGCTCCTCTCAGCTCATTCCCATTGCTGTGTTTGGATGCAACTCCTTCAGCCTCCTCCCTTCCACAGGGAACCTCCGATCTTTTCTCTTGCTCATTCTCTTGAACTGTGGATTGCTTTTTCTTTATCACCAGGTTAGACGAGAGCCCTTTCTCCATCCAGTGGTTAGATTCAGGTTTCTGTAGCTTCTTTTCATCCAACAGCTGGTCTCCCTTTTCCCTTGGCTTCCCATCAGCTGGCTTTGTCTCATCTTCCTTTTTGATGGACTGTTTCCAAAGAGCTGATTCTTGATTCTTGTCAAGCACCTTGAATGGGTTTCTCGGCTGGCTCAAAGGATGAGGAAATGGCTCAGA-GGC--ATGAGACTTAATGGTGATAGGGTGTTCTTTAGAATTAGGATCCTAGGGATAATGAAAATGATTCACTGTAATGTAAAATAATGCAGCCTGTTAATCTAGAGTACCCTTATTTTCAGAGAAAGTGGAAACACAATACAAGCCGCTTACTATTTCTAAACACTTCTGGTGTCGTATCTCCATCTATAAAAGAACAGGTGTCAAACTCACAAAGATTGGGTTCCTTAACTTTCAATGTTTGGTTCCTTCTCTGTCCATGATAAAACTTTCTAAGCCTGGAGGGAAAGCAGAGACTAAACCAAGCTGCTTTCTATGATCCAATAGCCACAATGCATATTCTTTAGGAAAACCATTCTCTGAAGATGAACTTGTTTCCAAACCTAAACACTGTCTTAATATACTACCTTTGATTTTTGACTTTAAGAAGATTTCACTAGAGGAATACAGAACCAAAGTCTAAGCCATATCTTTGCCAATACGAGTACTATCACCTCCCCATGTAT---TGGATATCCATAGGGCTTGTCTTCATCTTAACATTCTAACTGCTTGTGAGTTACATCTAGCTT---CCAAAATCAAGTAGATATTGGTCTACAAAAAGATGAAGACATTAGTCAAgaatatgtactttttttttcctaactagG------------GCAtttaatatcctgaaaaatatCTGAATGAGTGAAATAGgacataa------aaatcctgaatataaCAAATGGTCCTTTGAATTAATAGTCCCATCAGGATCTATCTTGcttaaagaaaactttcagacC---------CAATTTGATAAAGATCA-TAAGTTTACATGATTGCAATGTCCTTTCAGTTTTAACACAGCAGATTAAATAATAGATGAATAATTCCTACCT---GCCATGGAACACTTCCACaccattttttcccttctgcCTTACTTCTGGTACATCGGAAGAACAACCTAATTAAGTACAAAGCACAAATAATCAAGGC-----TGCAAAAAGGCTTTA

a score=12461
s chr3           100966293 1598 + 160039680 ACCACCAAGCCAA--TTCTTGAAGTGGTCATGTTATGTCACGCCTTGGTATCCCAATGCAATGTGTTCCTTTAAAAGACTA---TCTAATGACTGGTAACTTTCTATTTACCCTTTAATA--TTCATGACGAATAACTTCTCCCATCTATATGGACTTCCCTGCTCTTCCCAA----------------GGAAAACTGCACTTTACTGAGTCTT------ACTTAGCA---TGTTAGACCTTTTCCCTTTTTCTATTACCAGAATAGAAAGTTGACAAGGTTGATGTTATTAGCAACTGAACAGCAGGGGGGGAACTGGCTGCTCAGGGTAGCTCAGTCAGTATTTGGGGcactggttgtcaaccttaacaccgtgaccctttaatacagttcctcatgttgagataacctcaatcataaaattatttttgttgatacttcataactgtaattgtgctactgttatgaatcataatgtaaatatctgatatgtgacccctgtgaaagggtcaagacccgagacccacaggtttggaattgcCAACAAGGTAGCTAGATGATGATCAGCATGT--ACAACAAAGGGTTTCAGTAATGACCTTTAAAGAACAAAATCC---CttatttttaaaaaattaaaaaCAAACAAACAAAAAAAACTATGACTGTAACTCTTTCAAGATTGGGGgtgtgtgtgtgtatgtgtggatatgtgtgtgtgtgtgGGGGGGGGTTCCTCTGGACACTCACCTCCATTCTTTCTTGTCCTGTGGTAGAAACAAACCCTGAAGCTCGACCACAAACTCCTCATGCAATAAACAGTGAGAAACAGGAATACTAGAAGAGAAGAATACAATAAAATAACTTTATT--AGAAGACAAGAAATAGAGAGAGGTCAACAGTCTGAAGTCAAATCCAAGCTTGAATTTTTATttttatttacatatttggagacagagtctcactgagtagccctggctggcctgggagtcactacctagaccagtgtggcctcagacttgcagcaatccttcttctgcctcttgagtcctaggatcacaggtgtgtgccaccacacccagcCCAGCCACAGATGTTACACCAAGGTGTCCTGGGTTTGTAAGTCCCACAGATGGTTGGTTACCTGTGTGGCTTCC---TGAGGAAAGGATCCATAGTCTTTCCCTCTTCTCACTTTCTAAACCAAAGCATGGCCATAATTATTATTATT-------------------GTTATTAttttggttgtttgagacagggtttctctgtgt-agccctggctgtcctggaactcactctgtatttttttcttcctga-------------------------------------------------ctgtcctatgat---gcccacattgcaaccctccCAGGGATGGCTTATAGTCTAAGGCAGGCTATAGGGCAGGCCTGCTGTGACTTCTCCTCAGGTTCTCCCATTACCC-TTTATCCATTAATACCCTATTAGGTGCCACGTGCTGTTACTCACGTGTCTCCCTCTTACAATAACTTACTCATGTGCTGCTTGCCTGGCATAAAATCTTAAATGTCCCTCCT------TATTACTTATAGAAG-----AAAAATATGTGAACAGGTTTGAGTGAAGGTCTAAAGCATTCTCCCGTGACTTGTAAAACT------GTCTGCAGTCTGCTCCTCAGACACACTGCAAG
s HiC_scaffold_1 110965486 1308 - 233722169 ACTTCCAAACAAAATTTCCTGAAGAGATGACATTCTTTTATGCCATGATACGCTAATGTAAAGTATTAAGTAATATGACTCCTTTCTAATACCTGGTAAATTCCTAGTTACCTTTCAGTAAGTCCAAGACAAATGTCATCTTCATCTGGTATACACTACCCTGCCCTTCCCAAatttcaaacaaaggaagggaaaCTATAATTTATGGTGTATTTCACATATTCTACAATTTGTTacatattatctccttttcc--taCCAGAATTAAAAGCTAACAAGTCAGAAGCTATTA----------------------------------------------------CTGGGGGAGCAGATGTTA---TTAGC-----------------------------------------------------------------TACTTCAGAGTTGTAGAGGAAC-AATGGTAGAACTGTTAATACAGAAATT----------------------AGCCAAGGGCCAGGCTTCTCAGATT------------------AACCAGTTGTTCAGCAGTTTGAGAATGACA----GTCCCAGAGATacccaataat--acagaatttgtaCCTAGCTGCAAGttttttatagaaaa--aacaaaaaa-------------------------------------------------ggaaatacattttgGTGT---------TCTCTTTGAATCCTTACCTGTATTCTTTCTTGCCTTTTGGTAGACACAAACCCTGAAGCTCTACCACGAAATCCTCATGAAATAAACAATGGGAAACAGGGATgctagaggaaaaa-----aaggaaaacatttcatttgAGGAGCCAAGGAGC----AGAGGTGAACATCCTAAAGTCTAATTCAA---------------------------------------------------------------------------------------TGTAGTTTCAAA-------------------------------TCAAGAATC-TATGTGTAT-CCTCCA------------------------------------CTGGATTTGTAAATCCCACACATTGTCA--TATCTAAGTGCTTTCCTCTTGGGGGAAGGGTCCATAGATTGTATCTTTCCTCATTTGCTCAAATAAAGCATGACAATAAATGTCTTTTTTGGTAACTCAAAAGTTTAAAGCTATactattgggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcagtcgtgagtttggtccccggtaccaataaaaaggaaaaagacaaaaaaaataaaaaaataaaaaaataaagctatacTATTGCTTGACCAACACAGTGACACTCAAAATGACA------AGTCTAAGGCTG----------------GCAGAGACCCTATGTCAATTTTTCTCATTACCCATTTATCATTTAATCGCCTGATAGCTGTCACTTAGTATTAGTCAAACATCTACTTCTAATAAAACCCTATTAATTTGCTACTTGGTTGGTATATGTTTTTAAACTACGCTCCTAGTGTGTAAAAATTATTTAAGCATCTGAGAGTAT----ACAGGCTTGAATTAAGGTATAAAGTACTCTCCTATGACTTATGAAACTTATTTGGCCTATATTCTCATCATCAGACATAGTTCAAG

a score=20197
s chr3           100969405 1467 + 160039680 TGTAACCGGGCCGGGCTGGAGACTCACTCGGTGGCCTGCACGAAGCCGCATGTGTTCGTCCGGCACACGTAGAAGCTCTTTCCCTTATTCGGGCCATCGCGGACGCCGGTCTTTAAGAAGCAGGCGTCCCCTGAGGAAACAAGAAGGTCAGCATCGGCCACTCCAAGCCAGTCCCACAGTCCCC-GGGAGGGAAATCCCGAGA--CTGAGGCCTTACCGTGCTCCGGACACTTAACCAGGTCCATACCGCAGCCAG-----------GAAGCCCTGGCCCGCCGGGTTTCCGTCTTTGACTCCGCCCCGTCCC--------GCCCACCACAACAC------------------------------------------TCCACCAATCAAGCGGGAGAGTCTCTCACTTTCAACCAATTACAGTCTCCCTCAGGCTTGGCGCGCTCTGAAATCAAACT--TGGAGTGAGGAGGCGTGGCTGAGCTCCAGTGAGGACGCCGGCATGCTCCCTGGCTTGGGGAAAGCAGGACTTGGAGAGAAGTGGACGAGGCTGAGCTTGGGAGACTCCAGAGGAACCACTAGACCCAGAGGGAGCCAGAGCCGCTTGCCTGCTCGGGAAGCAGCC--ACTGTGGGCGGGAACACTTCAACTTGAG----GCGGCCAAAAGGCGG---------GAGCATCCCTT--AAAAC--TTTGGGAATCTACTGCATAGTCTGTAATAAGCACAAAGACTCCCTTAGGACCCCG--------GGC--AACCTTTAAAT---GAGTGCAGGGCG-----TCCACGGGGTCACCAAAGATTGAA----CATCTGCACAGA----------------------TCTCAGTTCCAG--GTTCCGCGCTCTTTGAG-------TCTTAGGCTGCCTTCCCCTGGTGA----GGTTCTAAGGACCGCCTGGTGTGGACGCCCT----------GGGTCTGAGAGAAGAACCT---GAGGGCAATACAAG-----ACCTTGCGTGCTTACTAATTTTACAT----------TGTGTGTTTTGCATTGTCAAACCTTTT----------GAACTTATTTTGCATTTGTACTTTtaaaaaaccgagagtgacgcatggtggcgcacgcctttaatcccagcacttggaaggcagaggcaggcagatttctgagttcaatgccagtctggt-ctacaaagtgagttccaggacagccagggctacacagagaaaccctgt--ctcgaaaaaccaaaaagaaaaaaaaaaagaaagaAAAGGAAAGGAAAGAACTTGTAATGGATTCTTTCAGTGAGCAGAAGGTGAGGAATGACTATCGGAGCTTGGCTGCAATAGCCATGACTTCATATTTCAGCAGTTGAAGATCATGTGTCT--------TGGAGTGGCACACACAACTGCT------ATGAGGACAGAAAAGCTGCAATGTCTAAGAAGTCTGGGCTATATGGAGGCTGTAAATGTTTTAGGAGTTC--------AGAGTCCAGACAGTCCCGAGGTATCATTTATGAATTAAGCAGTTCTTACTAAATAGCTTTTTTGGTGTCCCAAGAGGAGTAGGTGTTTGAGAAAT-ATAAAGTTCATTTAATGCATACATTTA-------------AAGCAACT--GTTCTAACC-ACAAGGGGCTT
s HiC_scaffold_1 110968082 1571 - 233722169 TGTCACAGGGAGCCGCCAGAGACTTACTCTGTGGCCTGCACGAAGCCGCACGTGGCCTCCCGGCACACGTAGAAGCTCTTTCCTTTATTCGGGCCATCGCGAACGCCGGTCTTCAAAAAGCAGAAATTCTCTGAGGAAACAAGA---TCAATAAGAATTATGCTACGCTGGTTCGGCAGGCCCCAGGGAACTAACTCCTAAGATTTTGAGCCCTTACCATGCTCTGGACACTTAACTAGTTCCATAACTCCTCTGGGGTCTTCCAACGAAGCC----CCTCCTTTGCTTCCGCCTTTTAGATTGCCCCGCCTCACTAGAGAACCAATCACAACTCGTCTTCTGCCTAGGGCCTTGGCTCATAGCCGGTCTACTACTGTCAGCCAATCATATAGGAAATTCGCTCATCTCCAACCAATCACAGCCGTCTACAAGCCT-GCACGCGCCGAAATCAAAACTATAGAGTGAGGGGGCTTGGCGGA---CCAG-GGTGAAACCGGCAGG------GGCGTGGCTGAGGTGGTTTT----GAAATTTAGGAGAAGCAGAGCTGCGGAGATT---GAGAGGTCA--AGATTTAAAGGTCGGGGAAA--------------AGGAAAGAGCCTGACTGAGGCCAAGGGAACTTTTCCTTAAATACTGAGACCAAGAGGCGGCCCCAGAGAGAGCACGAGTTTGACAGCCGTCTCGGAACCGGGT-CCTAGCGCTCCAAGAGCAGAA-----CCCTGAAGAAGCTGCCGACAAAGGCGGAACCTCTGAATTCCGAGTGCTGGACGGGCCCTTAAAGCTGCCATCGTGCTTTGTAAAGTCGGCTGTACAGGCACGAAGACTGCGAAAAAATCCTTTCGATTTGAGTAGCGCTGTGCTTCCTGAACACATCCCACTAGG----CTCAGCCTGGTGAAACCGGCGGGCAGCACCGTATGCAATACACGCCGTCACCAGCTAGGGGAGTGAGTGAGGGCTCTGTAGACGGGAACGCAAGTCTCAATCCCACGATCTTTTGGACCACACAGCTGCTTTCCATGTGTACTGGACGTTCTCTAGGCTCTCTGCGCTTTGAGGACCCGAGTTACA-----AGTTTCAAAA-----TGAATATCGCAGGAAAGAAATAGACTATTAC-------CTTTGAAGG-----------AGAGTTTTGCTTTGAAT----ATTTGGTATTTTCAAACGTTTTCTACAATATGC-----------------TTTTGTAACTTTAAAGGTCGAGTATAAAATTAAAGGGACTGTAtttgaaa---------ttataataatttcttttttgttcaaaaaagggagaaatagatACTTGAGGTTTGTTGTAAGAGAGATGGATTCATATTACAGCAATTGAGGACCATATGTCTCAGACATATGGAGCGGCACATGCAACTGTTAGGGACAGGAGAACAGGAAATCTGTAATGTCTAGGAAATCTTGGCTGTATGATAAGTGTAAATGTTATTGGGGTCCAAAGGAGGAGAGGACAAAC---TCCAAGCTATCACGGACTACTTAATTAGTACTTAATGAATAGCTTTTGGTGTGTCC-----AGTGTAGGTATTTGGAAGGTGGGAAAATTCCTTTAATTTA-ACATTCGCCACCAGGGATATAAACAACTCCGGCCGAACCAACAAGGGGGTT

a score=20824
s chr3           100972897 1580 + 160039680 tGTAAGTGGTGCTGGAAGCTTCCGTGTGGAAAGTAAATGGTA--------------GGCATACCAACATGCTGAGTAAATAGCCTAGTGGCTGAAGAA-----CTTGGTAGTAGACACACTTTACTCACAATCGGTGGTGACCCTGAAGCAGATGGgtttcctaatctgtg------aatccaggacaataca----ctcatgttagttattgaggaattgaaag---caagtatactcagcaccatgctggctgacacacgtcagcctcaTTGGGCACTCCT---TAGAGGTGAGAGGGTGC-GCTCCGACACTAACCCCTTAACACCCCTGTCAGCATCATTTTTAAAAGTATCCAGCAATTTAAAATT-CAAGCCAGTTGTCAGATTCTAGTAGCTCTGCAAGTCTCATTTATTGTAT-------------------ATGAGGGTTTCTAGCCAGCTGTCAGTTCTAAGTATCCTATTCTGTGGGGTAGGGGTGAGGAGACAGTGCCAGGATGCCTTGAGCATGCTAAGTTAGTACTGAATCACTGAGTACCACCCCATC-CAGCACCCGATTTTCTGAAACTC-----TCGGGCATTTTGATTGTTGCAAACGGAGAGCCTCATTCTAACTGGCATGTGACAGATCTTTGCCCTGCAGC-ACATTCTGAGAAGGGAAGTTGTCAAATCTCAGCT--------------------------------------------TTCTCTGAGGTGTGTTGTAAGATGAGGGCTGT------------TATTTAGTGCTCACAACTACCCTAGCAACACGCGTTCTTTATTCCTAGGTTTAAAGATTTAACATagtcaggtctggtggctcacacctgtaaccccagcatgaaggaggattgccttgagttaaaggcaaactacatagagagaccaagctagcctgagttacacagctagatgtgtaggatatcgtctcaaaa---aaTAGTGTGCTAAAattattataattataattattattattaATtttggtttttttgaggcaggggttcattttgtagccctgattgccctagaactaaccctgtagaccaggctgtccttgaactcagatcaaccagcttctgcctcctaag-tgctaggatggaaaccatatgccaccactgccaggcaaaaattttaaattttaaaatatattCAGTGACTCA----GATAGTT----CACTTGCATTTCATCAAACATCTAGGTGTTTGCAGT-----GGCATG-CTTAACAAATTATAAGACTAAATAAAACAAATGTAAAAG---------CCATTTTACAAGAAACCACTAGGTGGCAGCCTATTAACATGAAAACCAAGCAGAAGGCCTGCCCACTTCTGTTTCATTCCTTTTGCTAACAAATCCTTACTGCTCACTCGATTTCATTTTGTTTGGTGCCTTCCAGATATATGAGAGTTTTAAACCTGTCCTTTGATTAAGGAACAATCAAGATGTTACTGTGGGCAAAAATCTGTTTATAG-CTGAACTGTCATTCAGTCTGACAAATGATTTTGTTGTACCAAAATTTTGCAGTGTTAGATTCCAAATTTCACTGTTCTTAAAATATGATGCCAAGAGTTGTTCAGAGCAGTTTTTCCTACTT-------GTATATAATTCATCGT-CGTGCATTTTTTTTA----ACGTGTAGAGTTGCATTGCCAACTGGATTTAGAACATTTT
s HiC_scaffold_1 110970855 1522 - 233722169 tgtaagcaGTACCAAAAG-GTCTGCGTGGAAAGTAAAAGCTAAAATTGATCATCTTGAAATGTTAACATTCCAGAGAAATATTCTAATGGTTGAAGAAGTAAACTACAAGATAGAAATCCTTTAATTTCAGATGCTGTTGATTCTTAAGCAGAATGATTTTCTAGCCTGTGGAATAAAATCCAGG-TGATGCGAGCTCTCATTTTAGTTCTtgggaaaatgaaagaattatgtTGGCTTAGCACTGTGCTAGCTAGCATGTATTAACTTGCCAGAGATCTGTAAGATAACAGTGAGA---TGCAGCTAGAACAGATATACTGTGACATCCCTGTCACTATCATTTTTAA--GTAATCACCAATTCCAATTTTCAAGTGACTTGAAAAGTTCTAACTGCTATgcaatttttattcattattttaaaaattgagttgttCAAATGTGCTTTTCCAATCAGGTGACAATTCCAAGAATCTTTTTCTCCAAGCTGGG-----------------------CCTTGCTC--------TTACCACTG---CACAAGCTACAGCTGCAGCGCAGTGTCTTATTTGCTGACCCTCGAAGTTTAGAGGTTTTCATTGATGGAGA-GGAGAAACTTGTTTTAACAAGCAGAAAAAGGATTTTTGCCTATAAGCCACATTCTGAGGGGGAAGACTCTCATCTCTTACCTATTTTACTGAGATATTTTCTGCAAAGGCTCTCATATCTTCACTTTTTTCTGAGGTATTTTCTGAGATAAGCCCTTCACTGCATTGCAACACTGGGTGCACACAACTACTTTAGCAGTAAATTGTCTTTCATCCccattttaaagatttatgaTA--------TGATG------------------------------------CTGAAGTTTAGAGCAC------------GACCATCATTATCCTGGTCAC-CACCT-----TACAGAGTTTCTCTTTGGAACTGGATAGAGC----------------CTGTAA--------ATTAATGTTGTCCT------GGCTGAGAATCAT--------------------AAAGCTGACAC-----ACAAATCAGAGCctgaa------------agctatttttttttagtctcccaGTATAG-------------TTTTTACCAGTagaacattttca----taaaat-tattcagAGATTCATTTGGATATTTAATACACTTTTGGATCATTAATCACCAAAAT---TGTAGTATACAGACATGGCTCAACAAATC-CAAGACTA-------CAAAGGTTGGGGGAAGCCCTGCCATTTCATAAATGATCACTAGGTAGCAGCATATTAACATAAAAGCAAACAAGGTGG--------------tttcgttgttttgttttaacgATATGTAATGGTAAC--AACTTCATCCCACTTTGTGCCTTTCAaatatattactattttaaacATGTCCTTTGACATAGACATAG-AAGAATGATACACTAAGGACTAATTTGCTTATAATCTGAAAAACCAAGAGTCTTAACAAATTCTTTTGTTCTACCAGTATTTTGCAGTATTAGATTCCAAATTTCACCATTCTTAAAATACTACACCAAGAGTAGCTCAAAGCATGTCCTTCTGCTTTTTGTAAGTGTTCAATTCATTGTATATGTATTTTCCTTAGTAGATGTGTAAAGCTGCACCACAAACTAGTCTTAGGATATTTT

a score=46129
s chr3           100978255 2300 + 160039680 CTGGTCACCACCG---GTTCTTTATTATTATCACATATCAGTGAATTCTCCTGCCTGCTGAGGAGAAACCGTGCTGTCGGCAGTGACTGCCTTCTTGTCATGTGAGGCTACCCAGGGCACAGCAAGTCTTTTCTAGCATCACTTTAAAATTTCTAATAAGCCAGTCCATCCTCTTCGCATATTGCACGCGTGTCCTTTCCTCCAGAGAAGCTGTCCCAGCTGCTGCGAT----TCTCTCCCCCGTGGTCCCCTTAGT-GATGGTTTTCAAGGGAGATTTGCTTCATCCCAGGCATC----------TTCAATGAGAG---CACAGTGGGATCGTTAGCTCCTTTTTCTTTTGGTTCTGACCAGCTTATTATGTGACTCCTCCTTCTCCTCTCTCTCTTTATAGCAAATATGTCATGCTAGTAATTTT-TATCGAGTATGCAATCAACCAACACCACAGCTTTCATTTTTCACACATGGACTCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCA-----ACCCAgtgcatgtaatttgcttgaacttaaccatggattccgaatttcatcttgtttgttt-gatccgtctacttatagccggtccagatctctttgaatcttatttctcagggctgccttattaatactgtctcc----------ccattgaacacttgacaagcctaccctccgtcccttcg---ggggtgctgcctacaaaactgctgagccaggcagagcACT----------------------CCTCCAGGTAAACATGATGCCACAGTCATT-------------------CAGTCAAGAATGGAGTCACAGTGTTGAATCTAGTGC---TGTCATTCATG------------GCTGCTGtccctttgttgatcagcattcaaaaccttacagtcaaagaaatgaggctagtctgtcttggctttttcttggtgactggctccGGAAACAGC--------CACAGAGGAAAATGGCTCTTCAGGACAAAG-CTCTTGCCATATACTAGGGCTGGTGGTTCATTCAACCACATCACCTCCTGTCTCATCAATTTGG-TCACAACGTCTATCCCTCCT-GCTCCTGGCTCTGTCTGCCTCCCCCTCCGGGCCCTTT--TTGGTATTCTCT-GAGGTTTGTATGCGTTTGGATGTGGGGTGGGAAGATTCTAAGT-------AAGGGATTTGCTGCATGCACTCAGTGAGAAGAGCTCGATATTTTGATGAGATCTGAGGCCACCTCCTTACGAACCTCAGTGC--------AGGAGCCCACCTGAACCACTCGGTCCAGCCCGCCTCTCG--TCGCTTCCTCTTTAATACTTCCTCACCCT--GTTTCCTGGGCTGACCTTACACCTCATTATAACTGGAAGCCTAACAGTTGTGCTTCCATGCACAGCAGACCCTGTCTACTGTGCCCGGGAGGCAGTCAGGCCA---CTAAGCTCTGTGACACTTGCTGCCTCTACAGTTCAGGATATCTAAAGGTCTTCTTCCTAAAAGCTTGCTGTCTTCTTAC----------CCCTGGGCCCATCCAGAGCTACCCATTCTAGTGGG------AATCAGAGAG------------CCGGGGGCAGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtagtgtgtctgtgtatatgtatgtatgtatgtgtgtgtgtgtaagtgtgtgtgtgtgtgGCCCCTCTGTGGGCTGTCTCCTGTTATTCCTCCTTTCTCACCCTATGAGCTCACTACCCCTGTGTCTTCTCTTCCATTCCTCT---TTGACTCCTGCTTGTTCACTCCCCG---CCCCTCACTCAGGACACTTCTTCAGAGCAGGGCAGATGAAAG--CAGTGTCCCTGGAT--GCCTGGGAGGTGGTGGTGGGCAGGGTCACAGCCTGGCTCTCTGTCCCTACCCAGAGCTCTGCACGCATCCTTAAGCAATGCCTCTGCATTCTTAAACTTTTTCATGATGACACTATGCCTGCCACTTCAGGCATTGCTTGTTTCTCATGGAAGAGCTGGAGCAGGGCTAAGTGACAGGTGGAGAAATTGAGCTCACTTCATTCAACTGATGCTGCTTTAAGATTACACAgtgtgtgtgtgtgtgtgttgtgcgcgtgtgtgCTTATACAATAAAACATACCAGGCCTATAGCACTTAAATAACTTTTCTTCATTGAAAAATGTTCTGAGTCTTGAAGAACATTCATGTATGGTAAATACGGGAAAAAC-------------GTTCGTTGAT-TATCTCAAGAATTCtgctatg----gcattatgttccccacagttcatgcactggtgccaaaac---------attaatatttag-gatggcgctttagg--gggtaattagatttagatgaggttctgaaggtgacaattattaatgctcttGAGATGATTATTAATGTCCTTACCAGAAGA
s HiC_scaffold_1 110975457 2248 - 233722169 CTGGTCATAGCAGCATGTTCTCTATTGT----------CCATTAATTCTAATGTATACTGAGTAGAAACCTTTTTCTCTGAAACATCCACTTTCTTACCATCTAGAGTTAGAAATAACACATCTAATGCTTTAAAGCAT-----TTGAATTT------GGCTACTTCATCCTCTCCACATTTCATATGCATTCTCCTTCC-CCAGAGAAACAGTTCCAACTGTTTCAATCACATCTTTCCCCTCCAGACCCCTTTGTCAATGTTCTTCAAT----ATTTGCTCAATCTGAGGCACTGCAAATAGAATTCAGTGTGAAAACCACTATGCAATAATTATTGCCTTT--ACTTTGGATATGA-----TTATTATGCA--TTATGAAGCTGCTCTTTCTTTTGTTAACAAATATG-----CTAGTAATTTTATATTGAGTGTGCAGTCAACAAAAACCACTGCCTTCATTtttcacacacagacacaag---------------------------ccTCCTCTACCTGGTGCAACTAATC-GTTAGAACTTAACTATGGATTCTATACTTCCTCTTGTTAGTTTTGATTC--CTCATTGTAGCCTGTCTAGATATCTTTGAATCTCCTTTCTGCCTGCTGACTTATTAGTGCTACTTCCTGACTCTTGTCAAATGAACACTTGACAAGCTTGCTCTCTTTGCCTTCATCTAAAGTGTTG---GTAAAAATGCTGAACCAGTCAAAGTGCTTTAACACCACTGAGAGAGACCTCCTCCATCCAAA--TTGTGCCTCCATCATTGTGTTTTGAGTGTGGTCTTCAGTCAGGCATGGGATCACA----------TAATGCCCATGCAGTTCATGCATATTAGCTCTATTACTGCCCTTCAATTTACTAGCCTGCAAA-CATAGCTGAAAAGGAAATGAGGCTGATCTGGCGTGACTTTTTCTTGAGGG-GAGCACAGGAAGCAGCTTGGAGACCACAGAGGGATGTGGCTCTTTAGGACAAAGACTCTTGTCTCCTACGAAGGCTGATGACTCATTCAGCCACATCATCTCTTATCTTGTGGATTTGCCTCATAGTATCTGCCACTTCTCATTTCTGATCCAATCTACTGCTTTCCTTTGCCCACTTGTTTGGGCTCCTATCGGGATCTACATGCATTTGGATGGAGACTAGGAAGGTGCTGAGTTACAAGCAAAAGATTTGTTACG--------GTGAGAAGTGGATGCTTTTTTGATAAGATCTGAGAGCGCCTCCTTAGGTAGTGTGGTGCTAAGGATCAGGACATCCCCTGTGAAA---GGTTCAGCACTCCTCACTGTTTAGTTCCTCTTCAGTACTTTCTCACCCTCCATTTCCTGAACTGAACTTCCACCT-ACAAGAAGCGGAAGCC-AACAGACCTCTTTCCATACACAATAGATTCTCTCTGTTATGCA-AGAAGACAGTGAGACCGGGCCTCAGTGTCGGGGAGCTTGCTGCCTTTC-------GGGCGTCTCAGTGGTTTCTTCCTGCAAGCTTACAGCCTTCTCACGTCTCACAATCTCTGGTGCCTCCAGGAACCTCCAACACTGTCGGGCTCAGAGATCAGAAAGACCAACTAGAGCCCAAGAGCAGA---------------------------------ATTTGAGTGGGTCAGGGAATGTGTAGTTCTTCTTT-------------------------------------------TGTGG----TTTGTTggct---ttttatttctgctttttttactCTTTACCTGTTAATTGCCCCCATTTCTTCTCTTCCAGTTCTCCACCCCGACCCCTTCTC-TTTACTTTTTATGCCCCCTCA------ATGTTTCTTTAGTTCAAGTCAGACAAAAGAACAGAATTGATCTATCAGCTGTGGAGGAGGAATTGCCCAGGTTC----CTTGTGTTTC-------ACTCAGAGccctgcatgtatgtttaagcagTCCTTTTTCACCCTTAAACTTTTTCGTGATGACACCATTCCTGTCACTTGAGTGATTGCCTGCTTCTGATGGAAGAGCTGGGATGTGGCTAAGTGGCAGGTGGGCAAATATTGCTCAGTTCATTTGACTGGTTTTGCTTTTAGAC---------------TGTGCATGCTACTCGAGTGTGTGCATGCACAATAAGAAACACCAAACGTAT--CACTCGGAGAACTTGCCCTGCCTCAACCATGTTAGCAGATGTAAAGATCAT---------ATAAGAACAGGCAAGGCCACAGTTCAGTTACTTCGTTGGTCTGTC-----GGTGTTGCTGTGGTCTGTATGGTGTTCCCCACAGTACATGTGTTGAAGCTCTAACTCTGAGTGTGTCAGTATTTAGAGGTGAGGTTTTTGAACAGATAATTGAATCT-GAGGAAATCATGAGGGTGAGA--TCTTCATGATGGTATGGTGGT----------CTTACAAGAAGA

a score=42207
s chr3           100981031 2777 + 160039680 AGAAAGGAtc--gctctccctgtcagaaag--cacactgaggaggaagatgtcttattcataggccaggaagcaccctcagct-gacaacggatcagc----actttgatccgggattc--agccttgagaactgtgagaaaataaatttctgtgatgtccatcacccgcctctggtgttttaccctcggccagagcataccaacacaAATTCCCAAGCTAATTGTTTACCAACTACCACAGCATATGTTTCCACATACAATGTTTTCTGAATGTGCCATTTGCACTAAAATCTACATATAAATTGAATTAGCTAATTAATACAAGT---------------ATAGAACTCTCCAGTGACTCCATTCCTCATTATTCTCCACATATTTATATATCTTTGCTTTGAACCCCTGGACTAAACCACACTGGCTTCTCATTTAACT---GAAAAGTGCCCAGACCACATTATCCAAAAGTTCCTTTATTCCCCTTGCCCTGGTAGCC----------------CTCCACA----------------------------GCTGAGAACAGGGCAGCACTCCTATTTTGT------GACTGCATCTGGGCTTGTGTTCAGATCCCACGCCTTGCTCT-------------CCAGGATATGTTAGGAGTTAGAACACAGGTAGCTGGTGTTTCCCTTCCAGGTGCAGAAAGCGTCACACAAGGAGCTGGTGGGGACGACTACTCCCTAAAGGAAG-----------GAACGCTAACTCCCTC--ACGTCTTTCTCATTGAAGCCTCACCTGAGCCCTGTCAGGTCAGAGACATTACCTATATTTTGTGGATCTAAAAAGGGCAAAAAGTCAAAGTGGTTGGTGAGTAGAAG-------------------------------------------------TACTTAGTAGCTT----------------------------------------------------------------CACTCTGTCTTATTGAAATGAGCTCCTTGGTGAGGGCTTCTGTGTTTACTATGCCTTTGGAGGGGAGGGACAAA-----CTGCTGAACAGGGCAGGTGACTACATGGGAGCAGGATAG-------------TGACTGGTGCTTCCTTATTTCATGCCTTG-TGAATGCCTTTCCTCACTC----AAGCACCA-CGGGTACACTTAGACGCGCCTGCGTGCTAGGAGCTGACGCTGGGCAG----AGTGGACAGCCCTTCCTCACATTGGAAGCTGAGCCCCACTGCTTC-----CCTTCAGATGCTGCAGCTCCTCTCAAGCTGTTCCCTCAGTCGACCTGTTCGCCAGGCACAGAACTGCTATTTGTCGGCTGTAGGGCTTGGCGGGCATCTGAACAATGCTTAAGGAAACGCAGGTCATTCTGCTATGAGCAGCCTTTTATTGAGCAGGTCGTATCTTGAGCAATGGCCACTAGAGAACCTTCCATTATTCGTGACCAGCAGGGTGGTACAAATAGTTGCTGCCAGACAGGCCAGGAAACAATGCAAAGGCTCCCTAAAGACAATGCAAAGACTCCCTAAAGACAGATTTGAGAATTTGTAGCGTCTGCCTTCAGTGACAGGAGACCATCAC-AAAATACATCTTCCTGTGTCTGTATAAACTCCCTCATAAGGTCACACTGAGTGACCACACTCTCGACAAGTGTTGGGCTGAAAGAGACTCTGTGGAAGTTAGTGC--TGAGTGCAAAGGGCTCCCCAGCTTCCCTG-----AGCCAATGTCACCTCTTAAGAGCGA----GAAGACCT-----CTCACTTAGGTCCTATCATTGCTGTTGCCCCAGTGGGGCTCCTGTTACTCTTGTGTTACTGATGTGTTTCTGTTCA---TGAGTGGGCAGAGTCTCT-------------GCACACTGCAGAAGAGGGAGCACTGCTTTGGGTGTCATGATCCTC----------AGTGATCATAAGACAGAACTG---TCTCCCTGTTTTACAGTtgtgatggataattctatgcagcaacttgattgggctaaagaatgcccaagataactaataaaatactgttcctggctatgtctggaaggatgctgcagggagaaaatgagcaagcaagccacataaagattatcagccctgtgagctagagagtttgctcagtggttagagcacccattgctcttgcaaaggacccaggttcaattcccagtactcccaaggtggctcacaaacatctataatttcagttccaggtgttctgacacccctttttggatctccatgatcaccatgcacacctgaggtacacataaatacatgcagggaaaacattcaatacacatgaaataaaataatctaaaaaaaaaaaaaccaattaaataaaaagatcagtctccaggttggtagttacaggttgtgttagcagcacaaatagacaaaagcccgagaaaaggcaaatcctctcttcttgag--gtgatgtccatcttctgc---ccttgaatacaagacttttgatgcctgaggctgcaaggcctttgtgcctttgcccttcagttctcaggccttacaccccagtgcaggaatcacctcactggctcccctagtttctcaggcccctgggtgctgattaaatcacaccatttgcttccagggtctctggtccacaaacattgttcta-gagatctcactgcctccgtaactgtgtgaaacaatttccaaaacaaaattcctctgacgtctcggttcagatcccg-tcacttctgtttctctggagaactctgactgatgcCATTTTCTCCACCATGTTGTCACAGAGATTCAATCCTTCTAAACCCATGGTATCTGCTCAACGAAGTAAGTGTACACTTCGCTTCCC--TCTTTGCTGAGAGAAGGGACTTTGTCAGCAACTTCCACACGCTTGGCTCTTAATATAAACCTCATCACACAGTCAGAACCATGGGACGCTCATTAAAAATATGTACCTCACCATTCCTCTTTAATATTAAAA----TTATGCAATGTCAGTCACCTATTTGATCCTCAA
s HiC_scaffold_1 110977699 2676 - 233722169 AGAAGAGATGTGGCCCTCTCGGCCATATAGGATACACTCAGAAGG----TGGCTTGTGTACAAGCCA-------TCACCAGATAGATACCTAATCAGCTGGCCCCTTAATCTGCAACTTCTAACTTCCACaactg--agaaaata--tttctattgtcTTGGCCTTCCAGCCTAGGTATTTTGCTATGG---------CACCAATATAAGTTCCCAAGCTAATTATTTGCTCTCTGCCATAACATTTGTTT---------------TCCAAATGTGCCATTTGCATTCAAATCTACTTGTAAATTGAATGAGCTAATTAATACAGGTCTAAAGTACCTCAGGATAGGAGTCTCTGGTGGCTCCATTTCTCATTAATTCccatacatttatatattctcACTTTGAACTTTTGGATTAAAATGCTCTGACTTCTCATTTAACTATAATAAAGCACTCACACTATTCTATCCAAATATTCTGCTGTCCACATTGCCTTGCTATCCTGACTTTTTCCTGAGACTTTACACTTAACTATCCCTAAATTAAGCTCTTGGGCTTAATAACAAGTAGTCATCACATTTTGTAGCAGAGCCCATGTTTATGTTTATGTTCAATTTCTACATCTTGTTCTTTCTACTAGCGTGCTAAGA---ATTAGGAAGTAAAATGCAAGTGTctagt-ttcctttttcagaagtATAAAGGATTA---AAAGGACTAACTGGGATGATAA-----TGATGGTAGCCAACGTTTATGAGTTCTAATTCCTTCATATgtgtatctcatttaatccttgt---aACTTTGTAAAATAAGGATTATCACTCCCATTTCATGGATTATAAA-----TCCAAGACAAAGAGATTAATTAATCGAAGGTATAGTCAGGATTTGAACTTAGGCGGCTAAATCTAAACCTCATACACCTATTTATTAACTTACCAGAGGTAGGCATTGCACACACCATCTAAATGAAGCAAATAGAGCGGAAAGATGTGAgtctcaattttatttcattgaagctTACTTTTTAGTGAGGACTCATATATTTACTAC-TTTTTGGTGTGGAAGGGCaagtatatttattaaaaatgacatTCAATCTGTTGCCAGTGGAGTAATTCTTTGGTTTATTGAATGGGTAACACATACCTAATACTACACTGACTGTATTTTCTCAATCCATGAAGTGTCAGTGAGAGTATTCCAACATA--TGTGTGTTAGGAGTTGGTGTTGGGCAGAATTAGTTGGTAACCCTTACTTGGTATTGAAGCATTATCCAGCTACTTCATATTCCTTT--ATGATGGG-------TTAATGTTTTCCTTCAGTAGTGTTGCTTTTTACACACAGCATTAC-------CAGTTTTAGGGC-TAGAAGGTATTTGGCCCACACTT-AGAGAATATAAGCCATTCTGATACCAGCACTCTTGTATGGGGCTGATTGCATCTTGggcattgaaaataaaagaacccTCAATTTCCTGCTGCCAGCAGGGTGGTACAAATAGCTACTGTCAGATAGACCattaa----------------------acaatacaaagattCCCTAAAGACAAACATAAGAACTTGTAGCATCTGCCTTCAGTTATGGGAAATCATAACAAAAACATGCTCTCATGTGTCTATTTAAACAGCCTCATAAGGCAGCACAGAGTAGCCATTTAATCATCATGGGTTAGGCTGAGTGGAAATCTGTAGAA-TCAGAGCAAAGAATACAAAGCAGACCTCTGGTCCCCTAGTCCCAATCCATCTCATCCTTTCAGAGCCAACTGGGAGACCCAGTGACAAAACAAGTCCCTATCATTGTTG----------------CCTATTCCTATGGTCT----------TCTTTGCTTAGAGTAAGATGGCCAGGTCTTTAAAACTAGAGAAAGCATTCTGCAACAAAAACAGCACTACTTTTGGAGTCATGATACTCAATGCTGCTTAATGGTCATAATATTTAACTGTTTTTTCCCTGATTTATAGTTGTGATGATTGATTTGATGTGTCAACTCAAGTGGGTTAGGAGATACCC-AGATaactagtaaaatattttttctaggtGTGTCTGTAAACATGTTTCAAAAGGAGAAT-AGCA---------------------------TTTGAATTAACAAATATG----------------------------GCAAAA-------------------------------------------------------------AGATCTTCTCCTACT--------GATGTGTGTGGGCATCATACAA-----------------------------------------------------------------------------------------------------------------------TGTGCTCAGAGTGCAAATAGA----------ACAAAAGGCATCT-TTCTTGTCTTCAGCTGGGACATCCATCTTCTGCTGGCCATGTGCGTTAGGTCTCTGATTCTTGAACTCATAGGTTTTTTCTCCC----CCTCTCCATTCTCAGGCTCTGC-CCTCAGACT--GAGTTACATCATCAGATTCCCTGG-TTCTCAGTTTGTTGGACTCAGACGGAATTACACCACCAGCTTTCCTGCTCTCCAGCTTACACATAGCATACTGTGGGACTTCTCAGCCTC---AACTGTGTGAGacaatttcaagaataaaattacttttttgtaTGTCTATCaatcatatttttttctgcttctctggaAAGCCCAAAGTAATCCCAGCTTCCTCCCAACT----------GAGTCAGTCCTTAT-AATACATGGCAATTGCTCAACAAAGTAAATCTTaagtcctttttcctttctttattgaaAGAAGGGACTTTGTCAATGACTTCTGCCCAGCTAGCTCC---TATAAGCCTTGGCTCCTAGTCAATACTGTAGGATGTGTATTGAATACATAAATCTTATAATCTCTCTCCTATATTACAACTCCTCATTCTGTGTTGGTC-CCTGTTTTGTTCtcaa

a score=44341
s chr3           100985566 4446 + 160039680 [encoded data, 4761 characters]
s HiC_scaffold_1 110988905 3743 - 233722169 [encoded data, 4761 characters]

a score=17763
s chr3           100991808 639 + 160039680 caaaataaaaatTTTTTAAAAATAGAAAGGCCTCTAAAAATGTGGGGTAGGGGCATCATATTTATGTCTGAAGGACTATCTAATTTCATTCTTCTTCTCA-------------TCATTACCTGGGAGAGAAGAAGTTAATGTGTTGGT-TGTTT------------------------GAGAAAACATTTGGAATGTTTCAAACGAGGCTTTAGAGGGAGTTGGATTAAGGAAGCAGCAGGTCTGTGGTGGCAGTTCTCACAGCCACGGATAATCTGCTTGCAAAGGAGCAAAGGAACTAATTATCTTTGGAGAGGACTGTGTGCCTGataaaataattaaaaataaatGGCTCTCCTTAGAAATGCAAATTACCAAGTACTGAAGAAACCCTGGTGGTCACATAGACAATAAATAGATGTGTTATCTGAGGTCCTTTAT------TTGATTGATTTTCAATTCTGGCTACAGCCAGGCCTGCTCAGTGGAAACAGCTCTTGAAAGCCTTAAACC---ATCACACCTCGCCCTT---GGGA--TTTCTAGGGTGAGATTAGGAAA---CTCAGGAGTCAGACTTGACCCTCTTCTTCCCTTGAACCCACACTCCAGTACCATGAGA----CAGGGGCATTACTGCAGAGCCGTCTCCCAAGTTCTACCGAGGCTCTTTCCTCCGACTCAGTGCTTTCA
s HiC_scaffold_1 110993398 653 - 233722169 CAAAAtcctaatt-----aaaattaaatgttctGTAAAA--TAGGGGTAAGGG-ATCATGCTC----TTTAAGAAGTCT-TCATTTCATCTTTGTAATCAGAAAAAATATGCTCCCCTACGTGAGAGAGAAGTA---AATGTGTTGACATGTTTAAGAaaacatttggaagaaaaaaagagaaaacatttggaGTACTTCAAATGAGGATATAAAGGGAGGTGAATTAAAGAATCGGCAGGTCTATGGAGGGAGTTCTCACAGTCACAAAAAATCTGCTT--------GCTAAGGAACTCATTTCATTGGGAGAAGACTGTTTCtctgataaaataattaaaaataaattgctcTCATTGGAAATGCAAATTACCAAATGTTAAAGCAAGCCTGTTGGTCACAAACATGATAAACAG-------ATTTCAAGTTTGTTAGGTGGTATTGATTGGTTTCAAATTCTGGCTACACCTGGGTCTG---------AAAAGCTTTTGAAA----TAAAGTTGAGGGGCCCCTCAGCCCTGCAGGGAATTTTCCAGGCTGTGAGTTGGAGAACTTTTAAGAGTTAGATTTTATATGTTATTTGTCTTGAACCCCAGCCTTGCTAGTATAGGAGGGCTAGAGGCCCTGtgacccctcc-tcctccaaatACTACCACAGTCTTTTCCTACTGCTCAGCGCTGTCA

a score=50539
s chr3           100993084 2403 + 160039680 TTACCCTTTTGTCAAAGCGCCGATATTGATTAGACAACGACTCTTACACTTTTCAGCGGGCATTTGTAAAGGGGGGTTGGAGAAAAAACATCGGATTTCTGCCTAGAAA-AAATTACATAATGATTG--GGGGAGTCCGATTTCAGGCAAGCCAGTCCATGCTCTCAATCCCTCCGGCTTTGCCGACACCCGGTTTTTCCTACATTTCTTATCTAGAGAAAAATGATTTCCCTTGTGACTGGGCCAAGCTGATGTTGCCAAGGGAATAGATGAGTGGGAGAGGAATGAGAGAGGAAGGAAGGCTCGACAGCTGGTGTTCCTCTCTTTCCAGATGAGGCTGGACCTCCA--------GGAGGTGAGGTCTGTGTGAGTG-------GGGACAATGACACTATCTGCTTCTGAAGGATGCAAAGAAAAAAAAATGGTTGCTACACAAAGAAACACTCGACAAGATATGGTTAACAA-TCTATGTCCATGGCACATCCCTTCTGGTCCCTTGGTAACTTGGCCAAGGTCTAAAACAGAAT-----------TCATTCATCCTCCACGCTCCAACCCAATCCCTCCACGCTCCTTTCTCCAGCCCAGGTGCTCCTCAGTAGTG-TCCACTC--TCCTCTCCAGCTTCCTTCTGAA--GTGAT----------GTCTTTCTCATGCCCACCCAGAGAGCCTTTTCTTTCTTTGCACTGAGACTCAGCTGTGACAACTTCCTGGCCTTCCGGTACAAGCAGAGGAAGGACGTGGCCAGAAGGAGCAGCATGACGAAGGGGCAGACGATGAGGAAGTGGAGCAAGGGCCCCGAGGAGCAGATCAGGGAGGAGACCGTGGGCTCTGCAACCA------GAGAAACACAGAAGACAATCAAT-CAGTGTCCCAACGATCGGGGCCGAGCAGGCGAGTACGTCTCCCTACACATCATTATCGGCAAGTCCGTGT--AGATGACAAGGTGGAATGGCACAGGCCTCTCGCCCTGCAAGTGCACTGGAAGAACAGGCCCAGGACATTCCC---AACACACACCTC-----TTCCCCCTGCCCGGCCATTGC--AGCTGTACAGCTGCCAATGACCTACTTACAACCACCAGCCaaaaaagaaaagcaaaacaaaaaaaaaaagaagagagagaaagaaaaCCTTTCCTTTAATCTTCTTCCCTCAGAAAAGATATGTATAATTCAGTTCTCGTTCTCAACTGTGTGGCTGGCTCTGAATTTTTAACTGAGATATTCCCACTGCTGTTTCTGAAACTCACAGTGCACTAAGCTGTCCTCAGTAACAGCTGTGCCTATGAAGGAGGGCACTTTTGCCCCTGACCCA---TGACATATAGGTTATCCCGGGTCCTGACTCCTTGCCCCACTATGCTCAATTCTCACT-TCCTGTATCTAAGCCACTGGGCACAGTCCCTGTCTGGTTGGATCTCACTTCTCCCAGACTTCTTG-----------CATGGTCCCGTGCTCACCCCT----CCTTGTCACACAG-CCCTTTGTTTCGGCTCCTT----------------TCTTCCCTGG-------------ACTGAGAATGGCTA--AGTGTCCTGGGTTCCTGCCTT-------------------------------TGGTGATC----TTAAACCAAACTGAATGCCGCCACAGA-GTCAAAGCCACCATACAGAGAGGCACGCCAAAGCATGCGATCCTCCGATCCTCCGCAGCTGCAGGCCGATGGGAGGCACCATCAACAGACTGACATGTGGGGCAT----TGGGGCTCCTGGTCATTTCCCAGAGAGGCAAAGCAGAGAGGACTGCGGCCACCACAGGTCCTCGGAAATGGTACCCTGGGCTAATGGCTAAAGGCCTGGGT-TACAGGCATT-CAGCAGAAAGCCACATGTGTAAAGTGGTACCAACCACTCACTGCACTCTTCCAACTAC--ATTTCTGA---ACTATTTGAAATCAGGGCTATTCTG-AACAATCCGATGCTAACAGCAGCTGTGCTTTGCTTGGGAAAC--TAACGACAGGAGACCTCTCTTCTTCAAAGGTTAAGCTATACAATTTCCGAGACTATGGATTCCCAGTGAT-AAAACAGTTTTGATAGGTCGTTCTGACCAACCTCCAAGTGCAAAAGAAAAGACCCCTTGG--GGCCTCTCTGAAGCACTTTACACGTCAAAGACTGCCTCTTCACTGGAAATCAAGAGAGAGCCCAGACATTTGCTCGTGATAGGTactgtgagctcctggaggcttgggcctgtgtcttacatgtctctgtaccTTGTAACGCACCTCCCCCGAAAGTCCTCC-AGGATCCTGGAGAAGGAACCAGCTAC-CGAGTGTATTCCCCATGCAAGAGCCAAGGTGGCCGCC----ATCATGCAGTGTCGGT-CCCTGGCATTAGGCTGTCAGTTCTGAATGGGTTTGGCACAGAGCTGC-AGAGTTGGTGGCCTAGATATTTTTTTTCTGTTCTCAATTGTAGTTTTCATCTTGCATCTGATTTTCCTTCTTGAAAATGTAATCAATGGCAGA
s HiC_scaffold_1 110994241 2461 - 233722169 TTATCGTTTTGTGAAAGAATTAATACTGATT---CTTCTATTCTTAAGCTGTCGAGTGGGCATTTGCAGATGAGA--TAAAGGAAGATAATTGGATTTCTCTCTGGAAGTAAGTTATATTTTGGTTGTAGAGGAA---AATTTGAAGTAAACAAGAGCGTGTTCCCAATTCCTTTTGCCTTGCTGACAC--------TTCTATGTTTCTTATGTAGAGCACAAAGATCACCT------------AGAACTGGTGTT-ccaggaaaatcagcaa-tgaaagACAGGAGTGAAGGGAGTGAAGGTCC--CCACcatggctcagcccttaggaacTCAT-TTGCTCCTCCATGCTGTGCGAGGGCCTGGGCTGTGCAAGGGCAGTGCTAGGATATTGATGCTACCTACTCCTAAAGGCTATACTAGTCCAA------TTAATACACAAAGAAACTCTGAACA-GTTCCAGGCAGCACCTAAATGCTCACTGAATGTTTGCTGTGAGCCTCGAAGGACATGCCCAAAGCCCCAGACACAGTAAGGGACAGAATCAGAATTCTTTCACACCCCAGCCAGTCCAGTTCAAATCCAGCTCTCAGGAT----------TCAGTGGtgctcctcttcttcttcttcatcttcttttctgCCTGTGATCCAGCCTTCAGCCCCTTTCATGCCTACCCAGAGggccttttctttctgtgtgctCCGGCTCTCCCTTGACAACTTCCTGGCCTTCTGGTACAAGCAGAGGAGGGAAATCAACAGAAGGCCAAACAGTACAATGGGGCAGGCGACTAGGAAATAGAGTAAAAGTGAAGAGGAACAGATCCTGGCAGGAAACGTAGGCTCTGCAACAAAAGAGCAAGAATCACAGAGAAT-GTCAGTATAGAGCTTCCAC-----GGACTAATCAATCATGTGCACATCTCCAATTATTGTCACAAGCAAATGTATGTAAAAATAATGGGGCCAAAT-GCATATACTCTTTAAATTGTATGTGTGAGTGCAGGGTGGGGTGAAGAGAGGCCCCCAGGCGCATGCTGCGTGATTCCCACTTGCCCAGCAATTGCCAACCAACAGAGCTTCCAGTGACCTACTTAAAACTACCagcc-aaaatgaaaaacaaaacaaaaaagggaagaaaa--------------ctctCCTTTAATCTTCTTCCTTCAGAAAAGATATCTATAATTCAGCCCTCATTCTCAACTGTGCTGCCTGTCctgaatttttaagtgaaatattcCCAAAGCTGCCTGTGAAGCACATA--CCACTGTACCGTCCTTTTACCCAGCTGCACCTGCCA--GCAAGCACTTTT-CTCCTCACCCACCGTGGCCCCCAAG-CATCCAGCATCCGGGGATCTT-CCTTATGTTCCTCAAAGGTCATTCTTCTGCACATAATCTTCCTGGTCC--TCTGGGTTCAGCTGGACCACACCTC-CTCAGCCGCTATGTCCTACCTCCacttggttacagttcttcttcTGGTCCCCTCTCACACAACCCCTTTGTTTAGGACTCTTCCATTCTCTTTCATTATCTTCTTTGGTTCATTAGAGTTACTTGAGTATATCTGATAGTGTCATTTGTTTTTGCATTCCCTACAGTGCCTAGGGCATGTACCAATAACTGCTGATCTGAATTAAGTCAGATTGGCTGCAAACACATAGGCCAAAGATAC--TACATAAAGGCCTGCTAAAGCCTATGATCCTCCG-------GCAGCTGCAGTTCCCTGGGAAGCACTATCAGCAGACAGACATGCAGAGCATGTACCAACCTCCCTGGT-------CAGGGAAGCTAAGCAG-GATGACTGCAAATATCACAGGTTCCAGGAAACGGTTCCCCGAGCCACTGGCCAAATAACTAGGTCTACAGACGCTGAAGCAGAAAGTCATATGCTTAAAGAGATACCAGCCGTGAAATGTGGTTTCCTAGTAACTTATGTATGACATCATATTTAAAATCAGGACTGTTTTGAAAAAATCTAATGCTAAGTATAGCTGTGcttttcttggaaaattgtaaTGACATAAGCAGTTTCTTCCTCAAAGGTAAAGCTGTAAGATTTATGAGATTTTAGATTCTCAGAGATGAAAACAGGGTTAGAAGG-CATTTTGACCAAACTCTTAGTACCAGA------ATTCCATGGCTGACATTGCCAATGTGTTTTACATGTTGAAGAGTAGCTCTTTTTAGGGAACCAAGACCGAATCTAAACATTTGCTCAAGTCCTGCATTGAACACTCCTGAAGGGTAGGGTCTGTGGCTCCTGTG-------ACCTTATACAGCACTTCACCCATAGAACCTCAGGGGAACCTAGTGAATGGGTCAATTACATGAGTGCTGACCACAGGAAACTGGGAACATGGCTGACCCATGTCATACAAAGTAAATATCCTCCCTGCAGGCTGATAGCTCACAGTGGGACTGG-AAAGACCTGCTAAAGTTTCTGGCTTAGA----GTTTGTCTAATCTCCTTTGCATTCTCCATCCTAAATTTGGCTTTTCTTGTTGAAAGGTAAAGCAGTGGCAGA

a score=57849
s chr3           100996515 6844 + 160039680 [encoded data, 7681 characters]
s HiC_scaffold_1 110996956 6287 - 233722169 [encoded data, 7681 characters]

a score=41932
s chr3           101003352 1685 + 160039680 TTATCTTTGAGGAATTTGAAATCTTATCATTAGCCAAAAGAAAGGAGGAAAGAAGGCTAGCAGGAGT---TGCAGAGGGGAAGAGATATGCCACGGCCCCTGAGCCAGTGGCTGAGTGACCCCCAAGTTACCTGAGCGCAGCACCCTGAGCACCATTCGTTGCGACTCGCCTGAGGCTTGGTTGATCCACTTGCCTGGGTGGCCATGTTGCTGCCACTCAGTCACCCTGCACCAATATATCCCAGCATCCTCCATTTCCACCCGATGCAGCTTCAGGACGAAGTCTGTGGGAGAGGATCGGTAGCAGTGCTGGAGCCTCCTGCTCCCCTCTCTGCCATACTGCAGCAAGCCGTCATACTGCAGGTGCACCAGCATTTGACTCCCTGCGGGGGCAGTGATGGTGGCAGTGGCATTGGCAACTGCGGCAGCAGTAGCCGTGGCAGTTCCTCTGCCCCGGTACCATGTCACAGAGTATAGGGAAGCTGTGCTGCCTGAGCCATCTAGGCTGCAGCTGAAGCCCGCCTCTCCATACTCGGTAGCGTTTCCTGTCCAATTCACTTTGGAGACATGGACCTGGCTTCCTAGGAGGCAAAGTGGTGGACAGTTAGAGAAGAGCAAGACTTTTGGCCCGGCCACC--TCTGAGCCCTATCATTTCCACT-GGGAGATCTCATCTGGGATTTTCCAGACATGAGAACCTTCATCATGAATGTTTTCCTTCAATGCTTCTCCTTTTTGTCACACTTGCCAGGACATTCTCTGCTGCAAACCAAGCTAACCACTTCCCTCCTTTAGCCTCTTGCCTGATGGAGCCTCCTGCTAAAA-----TAGACTTCAGCCAGGCTCAC------AGCTTTTGCCCGACTTTG---AACTTCCTCTTTGATTTGCCACAGG--TGCTGCTCAGCTCCCAACTTTCCATATTCCACCAAGCTAAGTATTACAGCAGTA---CCGGTCCTTATGAAATCACCTTCCCCCACCACGCCCAGATGTCATCTTCTTGTTCAGACACA-----------------CTGAGAGACAGAACA--CTGATACCAGTGTCAGAATACCGCCCAAGGGATCCGTCTCAGCAATCAATC---AGTATGCCTTAAGCAGCCTTCCTCCTCCCTCCCTGT-----------CCCCCACTAACCAGCAGACGAGAACTTGAAATAAAATCCCCAGAATTTATAACAAAGAATAACCGAAAGTCAAGGTGGAGCATTACAGTGTATAATACATTTACCATTCCACTGCAAATTAATTTATT------AATCTGTTTTGTTGTTTTTCAACTCCCTCCCCACTATGTTTAGTCTAATTAGTGTTTACATGCTCTTCATGGGGAATCATGTAGAATCTTCATTCACATAAACTTCT------CTGTGTCCTTGCCTCCAGTTACTCCCTATTTGGTTGCAAATTGGTTTCTAATTC-ATCCCAATACTCAACCAAGGACCACTTGCAAGCTCAAGAGATCTCTTCAGTCATGGTTTT-----------CTCAT--TGGCCTTAGTCACTAAGGTTTATTTTCTTCTTGACATTCTTTCTTCTTTTGACCT-GGGGAAAAAGCTCCC--GCCACGGTGATGCCCAAAGTATC-----------TCCTGGCAGCTTATTCCGTAATTCGTTTCCTAACCCA-GGTGTACAGCAGCCATCAACCCACAGTCACATGGCGATCA----------------CACGGAGTATTTTAAGAGACTTTGGTCAGTTACAAGCATTCTCGAGTTGAGAAATGTCACT
s HiC_scaffold_1 111003634 1663 - 233722169 ttttctttagaaaatttgGAA-ATCATCTTCACCTTTAAGAAAAGCA-AATCATAGCTGGAAGGAAAGcatacaaagagaaataaatgctCTCATGAGCATGAGCTTGTGAC----------CTTAGTTACCTGAAGACAGCACTCTGAGCACCACTGACTGTGACTCATCTGATGCTTGGTTGACCCACTTGCCTGGGTGGCCATGCAGCTGCCACTCGGCCACACTGCACCAGTACATCCCTgcatcctcctcctccacctcatgCAGCTCCAGGACAAAGTCTGTAGGAGATGAACGGTAGCAGTGCAGGTGTCTCCTGAGCCCTTCATCTCCGTACTCCAGCAAGCCGTCGTGCTGCAGGTGTGCCAGCATGTGACGCCTGGTGTG------------------------------------------------------TCCTCTGCTCCAGAACCATGTCACAGAGTACAGGGAGGTCAAGCTCCTCGAGCCCTCAAAGCTGCAGTGGATGTCCACATTTCCATGCTCAGTGGCATTTTCTGTCAGGTACATTTTGGAGATATGTACCTTGCTTCCtagaagacaaaacagcagtAAGTTGGACA----------TTCAGACTCGATTCCCTGTCTGAAAAC--TTGTTTCCACTGGGGAGATCCCACCTGGTGCTCTTTAGACCTCACATCTTTCATCTTTAACAGTTTCTTTGACCCCTGTCCTTTCGTTTCACATTTTCCTGAATGTTCTTTGTTATAAATCAAACCAGTCACTTTTCTTGCT---CCTTTTGCCCAATGGA-CCTGCCACTGCAAACCGTCCAGCTTCAGCTGGGTCCTCTGACTGTGCCTTGGCCTCCCCTTGGCcagctttctcttcattttcctgGAGGATTTATGCAAGGCTTCCAGC-------ACCCCTTTAAGTTGTGCACTGCACCACTAACCCCTGTTCTTTGCAAATTATCTTCCTCCAGCACACTGAGATAGTAT-GTGGAATACAGATGCAGAGGGAGAAGAGGTTATTGGAGAGACTGAACATTTTGATACAAGTGTTAAAATATCACCCACAGGAACTATTTAAATTATTAGACCagaatatgttttaaacagatttTGACATACAAACAGATtttgacacacacacatactaagTAGCAGGTGAACACTTGGAATGAAATCC----------------AGAGTAATcgaa---caaataaagaaattataaggTACATTAAATTTTCAACTCCATTAcaaatgtatttatcttttaaaaacaactttgataTTGGGCA-------------TTTTTTTAGT----Ttagtctttcctttat-ttcttggagaaacatgtaaaatattt-ttgaggcaAGAATATATGAAACTGTTTTCCCACCTCGAGTTACTTCCTATTTTATTGCAGCCTGGCTTCCAATTCTATCACTACACTCGGCCAGGTCCAGTTTTCTAGCCCAAGGAAcct-tccagtctttttttttcttttttgtcctcaTGGTGGTTTTTGTTACTATAGtctattttcttcttgaaa----ttcttCCTTTAACTTCAGAGAGAATTCTCCCCACCCACAGTTCTGACCAGTACATCTGGATATCTTTTCCTCGGA-CCTCTTCATTAGTTCATTCCCTTATTTACAGCGTACAAGTG---GCAACCCACGGTCACACCTCCCTCAGAGTTTTCGTTTGATGCCCTCTGTCTTTTAAGAGAATTTGCTTACTTACAAATCGTTTCAGATtgaaagatgtgatt

a score=69671
s chr3           101006526 1753 + 160039680 agactGTGAGAATTTCTTGATACACTAAAAGATCTAATC---CTGAAGCCAT----------AGAAACACTGGCTTGAGCCAAGAGATGTTGCTTCCT--TAAAACCGTGCAGGCACGCACAGTCAAGTGTTTGGTTAAGACTACTGGAAGGCAGGGATATCAGTCACACAGATCCAGAATATAGGAAGACA--AAGTAATCATGAGGGTCAGAAAAGATAATAAATG-----------------------GGATCTCTGGGGCCATCCAAGTAGAAGTGAACAGTAGA-------GTCTAAAAGTACAAGGCTCAGAATAT----CTAAATCCAAAGATTTGGGGTGATTAGCTTGTAGACAATAGTTAAAGCCAGGGCAGGGTTTTAGA-AGTTCTGAGAAAAGCAGGGACTAAGAAGAAGAGCCTAGGATCACTCCCTGGGGAGCACTCAAgctaaacagagaatgggagggacct----gaagagaaagg---------acagagggagaggttgctc--cctaagctgatttctcttatt-tgtctctt--gtagcctgtaagctcaccATGGGCAAGAGCCCTGTCTCACTTACCTTTGCAGTCCCGTT-TCTAGCATATGGGAATGTCCAGGTATAATCTTAGGGGCTTTATAAAAAAAAATGTCATCTTGAAAACAGTACTTTAAGCACCACATTAGATTGAGTTATTTACACCACACTGTTGGATCTTGCCCAGGTCC------TTAGCTGTGGTACCCATTTGACTTTAATCAACAG---AGGTGACCCAGCCAggaccgagagacccagtcaagcctgtctgcattcagacagcagcactcgcagactagctggaatggatggaagttccattacacttttaaagatctccagaggtggagaagactcccccagtaagccattccaACAGTTAACTACTCTTACTTGCCTTATGTTTAGGCAGCCAAATGTTGAAAAGCAATTTCTCCACATATCCCCATAGAGTTGTACAGTTTCTGTTCACAGTGGGAGAAATATGCTTCGTATTACTCTTTCTCTGCCAAATTACAGTAGGGCCCCCACTGGAGTGACACAGCTTGTTATTATAGAGATCTGGAGATACGATTCCCTGGGCAGCTGCATGGACCAGGCTGCCAAGCTGATAAGCAAACCAGGCAAAGGGATCTTGTTCCTGTTCGAG---CTTGAAACCTTATACTGATTCACCCTAAGCAACCTCCCCTCCTCTGGTAGGCTACCCTGTCCTGTAGTCATTTGTAGGTGCCTATTATTTCTATGGTCCAGATCATATTTTTTAATCTCTTCATAGTCAC------------ATCTTAAACATCACTGG--------AGAAAAATGTCTGACAATACTCTCCTAAGGTTTACCTGTGGGCCTGAGTTTCAATTCTGTGAGTCCTGAAGTCTTTCTTTCAAGCTTTTGCCAAGTGTCATTTGTAGATAAGAGCCATTCCTCTACAGCACAGTGGTAGTGGCCCTGGTCACTGTCCTCCACACTCAGAATGTTCAGCAGAAATAAGTCTTGAGAAACTTTCTCAGAATAAAATTTTTGCTTGCTCCGAGGGGTTTGAAATTCGTCCCCATATTTTACAACACTGCTTTGGTCCATTTCTAGGATTTTCAGATAGGATGCATTTGCAGAAACGGAAGAGAAGTACCAAATGATGGATAACGGAAGGTTTCCAGCAGATCGGGACAAGATGGCACATTCTATCTGAGTGCTGGAGCTGATGGATAGCTCTTGGACCTGACTGCTTGAGTTCACGCTCAGTTTGCTCTCTGAA-GGAAATAATGGAAAGAATTACTTT
s HiC_scaffold_1 111005307 1812 - 233722169 agactgccAGAATTTCCTGCTATAATAAAAGATCTGACCACACTGAGCCTCTGTTTCCCATGAGGAGTGCTGGCTTGAGCCAAGAA--GTCACTGCCTAGTAAAAACAAACGAGCACATGATGTCCAGGTTTTGGCTAAGACGCTGGTGAGATAGGAATGGCAGCCACACAGAAGCAGAGGCCAGAAATACTCTAAATGGCTCTGTGGGTTGGCAGGGATCATAAATGCAACTGGGGCAGGCTCAGGATGAGGGTATCTGGG--CATCCACATATGAATATGCAGCTGGCCATCAGGTAGAAGGGCTTGGAGCTCAAGAGGTGAGGCTACACATAAAGACCCAGAGCTGCCATCTCAAAGGTAGTACTTGAAACTGGAGAAATGTTCAAGATCGTTTTCAGGAAAGCACAGAATAAGAAGAAGGGCCAAGAATGTATCCCTGAGGAACACTCATGTTTAGCAAAGACAGCAAGCGGTCCCCAAGAAGGAAAAGGGGAGCCCGAACGGCAGGAGGAGATCCTCGTACTAAGCT-ATTGTTCTTACCCTGCTGCTTCCACAGGCTGTGAGCATCTTACAGGCAAGGGCTCTGCCTTATTTATCTTTACATTCCTATTGCCTCATGTACAGTAGTGTT----TGTAAACTTA----TTTTTTGACA-------TTACCTTGAAAATAGTAAT------GCCAAAATAGATCAACTTATTTGCACCGTGCTATTGGATCTCATCCAGTCCCCAAGCCTGGGCTGTGACATTCATTTAACTTTAATCAACAGTAGAGGTGACCTAACCAGTGCTGAGAGTGCTAACCAAGCC-ATCTACATGTACGCAGCAGCACGCTTAGAGCAATGTGGATGGATGGAACttccattacatttttaaagatctcCTGAGGAAGAGGAGATTCCCTCAGTAAGCCATTCCAGCAGTTAACTACTCTTATTTGCCTTATGTTTAGGCAGCCAA-TGTTGAAAAGCAATTTCTCCACACATCCCCATAGAGTTGTACAGTTTCTGTTCACAGTGGGAGAAATATGCTTCGTTTTACTTGTTGCATGCCAAATTATAGTAGAGTCCC-ACTGGAGTGACACAGCTTGTTATTATAGAGATCTGGAGATACAATACCCTGGGTAGTTGCATGGGCCAGGTGGCCAGGCTGATAAACAAATCTATGCAAAGGATCTTGTTTCTATTTGAGTTCCTCTAAACTCCAGATTAATG------GGGTGACCTCCAC-CCACTGGTGGG--------TCCTACGGTCATTTATAGGTGGACAGTATTCTTGTAACTCCAAAC-TGTCTTTTTACTTCCACATAAACACTCTACAGAAGCTGTCCAAGAGAAGGTGGGTATTTTACAGAAAGACGTGTGCTAATACACTTGCAAATTTTACCTGAGGGCTTGAGTCTCAATTCTGTCAGTCCTGACTTCGCTCCTCCAAGCTTCTGCCAAGTGCCATTTGTAAACAGCAGCCATTCTTCCACAGCACAGTAGTACACACCCTGATCGCTGTCTTCCACACTCATTATGTGCAGCTGGAACAAGTTTGGGGACATTTTCTCAgagtgaaatttttgttttctccgTGGGGTGTGAAATTCATCCCCATATTTTACAACATTGGTCTGGTCCAATTCCAAGATCTTCAGCCAAGTTGTACTAGtggaaatgggagaaaaatacCAAGCAATGGCTAACTTGAGGTTTTTAGTACGCCGGGACAAGATGCTACATTCTATGACTGTGTTGGAGTTGATGGAGATCTCTTGGTATTGACGGCTCGCATTCACTCTTAGCTCGCTCGCTgcatgaaaagaatgaaaacagttaCTTT

a score=192350
s chr3           101011253 8291 + 160039680 [encoded data, 9135 characters]
s HiC_scaffold_1 111018780 8294 - 233722169 [encoded data, 9135 characters]

a score=70343
s chr3           101019883 3067 + 160039680 AAATCTGTATCCTGGAGTTCATGTAGGAGTTTGCTAAGCTACAAAAGGAA-ACTAAATATT----CCAAGTGA----GCCACAGTTGCAAG-AATTTGATCCTCTCCCTCCAGATAAATGTGCTAGGAAATGGTGATTGGAAAAGAGTCATTCTGCATGCAGTTGATGGCATCACTCATGCTAC-TGGTGCTGGCTCTCTTACTGATG-----------CTGCAAGATGATATGGGG--------------------------GATGGG------GCTTTGCTATTACCAGCTTGTGTGG---TGGGGTGGGGGGCTTGGGAAGGCCCCCCACTGACTCCTCAAGCTGTGTGGCATATGTC---ACTGGGAACAC-----------------ATGAGACACCTACTTGTGACACATCTCCAGAATACTCGGAGTGGTAGGTAGG----CTCTTTACCCAGAGCAAACAGACTAGTGGAAAGTCTCTCCCTTGGCAAGGCACTGTGACAGTGGATACAGGCTTGCCAGGGTCTGGGTAACAGGAA-----------CTCACCAGTAAGATTTGTCTTTGCACTGTAACTTCCAAAGTACTTCCCATCCGTGTTGGGTGTGTGGCACTCGTACTCGCCAGCATCTTTCATCTGGAGTTTTGAGATATGCAGCAGGACCGAGTCACCCTGCAGCCTCTCTATGTAGATCTCCTTGCTTTGCACCCTCTGGGCATACACTGCGTAAGAGAAGCCGGCATCCTTGGTACTGATGATCTGGACTTCCTTGGTCGGGGCGCTTGGCAGGTAAATAGACCACCGGAAATCCTGCGTGGAAGGACCCTGATGACCACTTACGGTGCACCTGATGCTGACAGGGTAACCTTCGGCTCTGTACAGAGGGCCTTCTTGAATTTTTACTTCCCTCTGGCCGATGCTGAACTTAGCTTGTAAGTAGGAGGAAGAAAGGGG-ATAAAAATAGGTGAGTGCTCTAATTCCCAGGGTACCGCATCGTGTAG-TCTCTATATTACCATCCTGGTAAATGAGACCGAAGGTTATTCACTGTAACCACCTTGAATCTTCACTACCTTGCTCA-GGCTGGATGGCAATGGAATGAATGGCTCAGTGAGGTCATCGTT--------ACCTAAGCATACACAG----CCCTAGTTTCCTTTTGAAAATG------TTTAGCCTCAATCATGTATCAAGGCCACGTCTACAAAGCA--GCAGCT--------------TGTCTAAATGGACAAAAGGT-----------------AATATCATATCTGATATTTTTATCTTTTGCAGTATTTTATGGCAAAA--CAGCATAAACCTTCTCAAACCCCAAACTCCAAGACGCAGCCTCTCCCACAGAAGGGCATTCAAGAGAGGCTAAGTCCACCACTCTGCTCCTGCTACCTT-ACCCTTCTTGCTGGTTGGTTACAGATCTTTGCAGCTCCCAGCCATGTCTGGTGCAAGACTAGATAAAATTAGCACCAGAAATGGCAGTGACACTTCCTGCCTCTACTGTAAAGGTTTTTCTTTTCTCGTTGCTTTTGCTTCGTTTTGCTGTTTTTACTGTTCGAATTTCTTAGAGAGGCTCTTTCACTTTGCTTGAAACTCTCAAAC-GGATGTTTATGAAGTCCAG---GTTCTGGGCTCAGAGTTTAAT-------TTTTTTTTTTCTTACCCAGGGTTTTTAGCTAGG-----------ATGTTTTCTAATTGAAACTGCAGAAAATTA------GGTCTAAAGGAGAAACGTGATGAAAAGGTAACTTTTTTTATAGAGATGTTTTAGATTCAGCATTCCCTCCCCCCCCGAAACTATAAGA---GTGTTCATTACGATTAGTACTGAAAGTGGGCTCGCTTTGTGGTTCCAAAAGAGCAGAAGCCAGAGGTAATGATGTCACAGAGATGAACAAGATCTTCTCTGAGGGTCCAGGAACCCTGGA--AGGGCAAGACGGGGTTAAAGGACACCAGAAGATCCATTGAGAGCTGTGGGCAGCATGAAGCAGTTGACAG-ATAGAATCCTTCAGAAGA----GGCTCCAGAGAGCCAGAG------------------------CAAGGGCAACGGGTTCAGGAGACT-CCTGTGGGGAG----CAAGGGAAAAGACA--------TGCAGAGCTCATG-----------------------AGAGGAAATAGAA--------AGAGGCAGGAAGGAGGCTTCCCTCCCCCACAAGAGGGTA-----------AAGTGATTAATTGATAAAAACAACTAAAAACTTAAAAACCGCATCTGAATACACTCAA-CCAAAACTGGCCAAGAAACTAATCAATACCC------------AGCCACGCACATTTCCAGTAATAATTTAAAAATACATTTAAGTATTCATAAATCTCAA-TGTTATATATTTATATCACATTTTTTGTGCTGAATATCTATAAATAGAAATTAGACTACATTAGAAAAAATTAAATTATTACTTACCAGAAACTGATGACAGAGA---AGTTTTAAACATTTTCAGCAAGGTAACCTTGTGTAATGTGCaatgtgggcactgtgcatcaggtgacacatgaaggaacagcagtgccattcactgttgccccaaaacaagggacagcccgcatgtccatcaacagtggaatata-gcagcagaattgccatatacacaagatggaactttataaagaaattaaaa-------attataactatttgtagtaacatgtagaattatgcctgatcattcatggagtaactttgaatctctttggctatctgtagaaatagtccgtttaaaa------ctta--aaatatttaaagttaaaatatatggagctggagag-atggctcagc----agttaagagta------ctgattgctcttccagaggacctgggttcagttctcagtacccacagctcaaaactatccatacctctagtcctaggaatcccagtg-ccctcacacagatatatgtaaaggcaaaaaca---ccaatgcatataaaataaaaaatattaaa-ataggcaagagtacattgtatcatttagctgatgcataagggttaaaatcatctttaaaaataagtcagggagtggttatcatgggagtcaggagggtgatctgtggggagggattatgtcccga--tgatgctca------------ggcaggatgggtgggcacgtctagggacctgatcgtgt-tgtttcttgaacgttgtagtgatgacacaggttttagcttctgcttactcatcaaactgcatacttatgttttactagccttttcttacatactatatttcaccatGAGATTTT
s HiC_scaffold_1 111028026 3194 - 233722169 AAAACTGACTCCTGAAAGATATCTAGGAACTCACTAAGCTAGAAAGGGAGTGGCAGATATTTAGGCCAAGGGACAAAATGACAGTTGCAAGGAATATGATCTTCT---TATAAGAAAAAGTGCTAGAGAATggtactttgaaaataataatt-----tccagGTTA----ATAACT--TGTTACCTGATACCAGTTTTCTCACCAAGGTACTGTTCTGCCTCCAAGAAGATAGCAGGACTCCACGATTATGAGAACACTTCAAGATCGGTCTAAAGCTGTGCTCTTACCAACCTATGAAGATCTGtagatgaggctttgggaaggcC-------------TCATGCTATTTAA-ATATAGCTCGATTGGGAAAACTGAAGGTTTTAGAGAATGTGAAATACCTACTTGGAACAAATTTCCAAACTATCCAAAGGGTTAGTTAGGTGGACTCCTTtcccaaatcaaacaaaatagtgcaAAATCTAGCTCTAGCAAAGGCCTTGTGAGGGTGAAGACTGGCTACTCAGAAGTCGGGCAGCAGAAGGGGACAAGCATCTTACCAGTTAGATTAGTCTTCGCACTGTAACTTCCGTAGTATTTTTCATCCGTGTTCAGCGTGTGACACTCGTACTCGCCAGCATCCTTCTTCTGGAGCTTTGAGATGTGCAAAAAGACTGCATTTCCCTGTACCCTCTCTATGTAGATGTCTCTGCTTTGCACCCGCTGTGCATATACTGCGTAAGAGAAGGCAGCATCCTTGGTGCTAACGATCTGTATCTCCCTGGTTGGGGCTGTGGGCAGGTAAATAGACCACTGGAAGTGCTGCTCAGAAGGTCCCTGGTGGCCAGTTACATTGCAGCCAATGCTGACAGCATAACCTTCAGCTCTATACAACGGTCCTTTTTGAACTGTTACTTCTCTCTGGCCTGTGCTGAGCTTAGCTTGCAAACAGGAGAAAGAGAGGGGAATAAAAATAGATTAGTGCTCTGGTTCCCAGCGTACCACATTATGTAGTTCCCTATATTACAATTCTGGTAAATGAGACCGCAGGTTATTAGAAATAATCAACTCAAATGTTCACCACTTTCTTTATGGTTAAGCAGCAGTGGAGGGGA----TTTATGAGTTAATTGTTCTTTTATAACTTTAACTTCCATGGTAATCGCTag---cctcttaaaaaaaaaaaacttcagcttCATCTATGTAACATAGCTACATCCATAAAACATGGTGGCTACATCCATAAAACATAGCTACATCCATAAAACATGCATTAGTTTTAAAGCAAATATAATGtgtgata-atttattttttatactattttgtggGAAAATTCAGC----ACGTTCTCAAATCTCAGTTTCCAG-----CGCTATTCTTGGAGAGTGGC-TGCTGGGGAAGCAAAGTCTGTCACTCTGCCCACAGTGCCCTAATTTTTCTGGCTGGTTGGTTAGAAATATCTACAGCTCTCAGCCAGATCTGATGCAAGATTAGCCAAAATTAGCATCTGAAGTGGCAGTGGCACTTCCTTTCTATAATGtggagagtttt------------gttttgtttcgtttt-----------------aatTTC-TAGAGAGTCACTATAGCTTTACTGAAAAGCTTCATACTGGATGaccataaaatccagcaagttttgggatcaaaatttattttagttcttctctttttttaaacaaaagcttTCAGGTGGGATCATTATGGAATGTGTTCT-ATTGAAACAAatcttaattattaatttttttaaagaaaaaat-------aatagtaacatttctt-tagaaaaaaatttaatccaGCATT-------TTTCAGAAATCATAAAGTTTATGTTTAGTATGATTAATTATG--GGCAAGttcatttttttgtctctgaaaaaacaaaacggATGACAGAGACACTGCAAGGGTAGACTAGGTCTCTTTctagcagccaggatgcagtgAACAAGGGAAGAGAAGACTGAAAGACATCAGAAGCCTAAAAGGGAGTGATAGCTGCTGTTTTGGAGTTAACAGAATAGAGTTTCTAGAAAGAATAGAAGTCACAAGAAACAGAGTATATGCTAAACTGTGTCCCTTCACAAGGACAACCAGAAAAGGAGGCTACATAAGAAAAGaagtcaaggaaagaaaaaaataacagtacaGAGACCCTGAAAAGACCACAAATGGACATtctagatgaaataaaagcaattctAAAGAATGTAAGGGGGCttagagaaaacaaaagggaGGGACAGGAACAGTAAGTACTCACCTGACGCAGCCAGCCACAACCT--------GCATGTGTACGTGCTCAGTTTCACACTGGTAAACTAACTAACCAGTACCCAGTCAATCAACTAGCCATACACATTTCTAGTGATAAATT--AAATACACTGATTTATTAACACATCCTAGTTATTATATCTACATCTTA-ACCTTTTGTATTAACCATCCAGAAATATGAGTTAAATCACCTCAGGAAAATATAAACTA----TTACCAAAAAGTCATGCTACAGAAgcagtttaaaacattttcagcAACACTGCCTTA------AAGAAATGTGTGCACTGCACCCTTGGC------TGCATTGATTGCCTCACTGTTCACCGTAGCCCC-AAACAAGAGGCAACCTCTATGCCCATCAGCAGCACAAAAGACACTGGAGAATGG-CAGAGTCATAAAACAGAGTATTATACAGAATTGAAAATTAATGCATGACAACCATTTGTAATAACATGGACGATTACATTCACTCAATTATGCAa-------gactcttttt---tatttatttatttaggttttttgaaagaagatcttgctatgtatttcaggctagctttgaagtCACTTTTTAGTCCAGGCCAGCCCCAAACtaatagtgatcttcctgcctgaaccttcagagtgctgggatt---------------acaggcatgagcca-ccatgcct---ggctcaaga--cACTGTGACCCTTCTGTTGATGT--------GCAAAAATAATTCCATTGTTTGTAAAGT--------TTAAACACAGGCAAAATCACACTGTATTCTTTAGC-------AATGAATTAAA---------------AAGCTTGGAAGCTGTGGTC-TGAGCATCAGGAGAGTGACTGTGGGGGAGGCACTGTAATCTGAGGGGGTGCTCATATCTGACTCTGATCAGAATGCGTGCACACTTCTAAGGTCCTGGCAATCTCTGTTTCTTGACCTGAGTGGTGAT--TGCaggttttagttt---tttatttgatAAGCTGCACATTTGTGTCTTGTTAgcttttttcta-----tatatttcaccataacttttt

a score=64367
s chr3           101027480 4781 + 160039680 [encoded data, 5339 characters]
s HiC_scaffold_1 111031877 4786 - 233722169 [encoded data, 5339 characters]

a score=17254
s chr3           101032889 674 + 160039680 TGGGTAAATCCAAACGTAAGCGATGAGTTAACTAACAGGTGCTAACTCTTTGTTGAAGGGAGCAGCAAAATGACGCAGAAAAGGGGGAAGATTTAAAAT--TCAGAGTGTCAGTGCC-----TCTGTCAGGTGCAGTAAAGAGAGAACGGTCTTAGAAATAAG----AA--GCATGGACCAT-GCTGCCAATAGCACAGGGT-TTCTGCAGCCCTGCAATGTATCTGACCCAGTAAATGCTGCACAACTTCAAATTCCTGGCTCTTGCCAAAATATTTTTTTTTCTCTATCTATTTTAGTTGCCTCCATTTCTGCCAGAATTGAGCACTGATGGGGTGAAGTTGCTTCTTTTCTGGAGGGAGGGGGGGAAAAGCTTTCTGTTGTCAAAGAaaagaaaaaaaaagagagagagagagagaaggagacaaaaagacagCTATTCTGTTGCTTTGGGAATCATTG-----TATGGCAGCTGTTGAAA-GAATGT-AAGATGTAGTTTCTCCCAAAGCATGGAAGGGAGAG---------GACAGGGATGCTTAGAATGCACTAGAAGAAAGACCTGTCTCAGTTCCTGCAAGGCAGATAAAAGAGATCGATATTTCCTCAGGCTGACACACCTCACTATTAGTTCCACAGAGGCACAGAAA--GAGAGCATTATGGTCTCGGATCATACACAACTAGGGCCCAGAAACAA
s HiC_scaffold_1 111036789 673 - 233722169 TGGCCAAGTCTGAAGGTAAGAGGTGGATTACT----GGATTCTGCCTCTTTGATGAAGGAACTA----------------CATGggggagatttaaaaaaacaggGGCATCAATACAATAGATCTGCCAAACACCtcaaaaacagaattattttagAAGTAAGCCTTAACTACAGAGACAATCACTGCTCATAATACAGAGTATTCTGTattcacaaaatataaacaaCCCGGTTAATTCTGTGCAACTTCTTATTCCTGGCTGTTGCtacaatatttttt---ctctttctattttagtGGC-TCCATTTCTGCCAGAATTTAACATTGACAGGGTAATGTCACTTCTTTGCTGGAGAGAAAAAAG---AGGCTTTCTGTTGTCAAGGAAAAAAAGacgaaag-gggaaaaaaatagagTTGGCAGAAGAGACAGTTATTCTATTGGCTTGGGAATCACTACTTGCCATTGTACCACTTGAAAGGAATGTGAAAATGCAGCTCTGGATTCAGCAGGAGAGAGAGGGCCACTGTCTGCCAAAGCAACCAGGAATATACTACTGGAAAATTCTGTGCCCATTCCTGCGAGATTAATGAAAAGAAT-----TTCTTACTGGTTCACAGGCTCCAATATTAGTCCCA-AGATTCAGGGAAACTGTAGGTATTGTGGTCTCCTACTCTAAGTATTCAGGCTTCAGGAacaa

a score=9288
s chr3           101037939 621 + 160039680 GCACACCGTAGGTGTGTGAGAACATTCGTTTTGCTTTGACATCGAGAAAGGAATCATTTCAGTAACAG-TAGAGGATCT---------CCCAAGCCAGGCGCTGCCTGCATCAGTG-----TTTGGACTGAAGGGA------------AGGGAATGGCAGGCCATTTT-------------GACAGCCAAGCATT---------------------------------------AAACCATAGGG---TGTAAGTGGCTGGGATACACACTCCATC-TGGATAACTCACA---TGAGGCGGTT----GTAAAATGAGACACAGA--AATACAGGGAGAAAGCAAGGCTAGGAGGAGTGTCAGCCAGTCTTGGGGGGGTGGGTGGGCTACAGGAGTCTGCTGAGCTGGAACAATGTGGGAGGAGTTGTTGGCACTTGCTCCCACCCAGGTCTGC-------AGTGTG-------------------GTTTTTATGTCGCAGGGGCTGGTGGATTTCAG---AGTTGGACTTC-----------TGAACTGTCAGAAAAACCAC-CTGTTCCGGTCCCAGTCTGGTCACTGAGCTTCGGTGTGTGTTTCCTCCTCTACAGAAAGGGATGGTGTCTAACTTCTCTTTCCTGAAAGGAGACCTCTAAAGGTCATGGGAATTCAACAGGGGACCAAGAGG--ACCCTGAGCAACAGGATGCCAGCCCCTACCTTTCTGCTTGCTGGGAAACTCATCACGGA
s HiC_scaffold_1 111043354 700 - 233722169 GTGCATGGTAGGTGTGtaagtaaatt---tttgttttgcttttcaggaAGGAATGGGTTCTCTAATAGGTAGGGGATTTGCATATGACACCAATAAAAATACTTGCTGCATCAGTAAGTATTTTGACATGAGCAGATCCTCCTGGTTCACTGAGAACCATGTAATTTTCGGCAGCAGACAAGTTAGCTATGCATTTAGGATGTCCAAGTGCCTCCTATATGCCTGGAACAATGCCAATCACTGGGCATTGTGAGTGACGAGGACACA-ACTCAGCCCTGAATAACTCACAATGTGAGGTGGTCCCCGGACAGAGGAAACACAAATGAGCCCAACAGGATAGTGAGCTGAGGAGG--------CCAGCCAAGGGCAGATGGCTAGGCT--------------------------------------TTCGGCAGTCTCTCCCGCCCAGGTGTACTAAAGACAGTATTCTGGGGAAGAGGACTGTTTGTTCTCACACTGCAGAGGCCAGTACCTTCTGCTCCAGCTTGGCTCCACCCCACACCATGA---GTCAGAAAAACCATTCTGTCCCAGTCATAATACAGTCATGAAACACTGGTGTTCGTTTCCTCATCTGCAGAGAGGAATAATACTTAACTTCTCTTTCCTGAAA-AAGAGGCCTGAAGGTCACAGAAATTCAGCAAGAGATAAAGAGACCATTCACAGCCACAGGTTCCTAGCCCTCACCTTTCCACTGGT--GGGACCTCAACATGGA

a score=146107
s chr3           101040108 4130 + 160039680 [encoded data, 4486 characters]
s HiC_scaffold_1 111044097 4199 - 233722169 [encoded data, 4486 characters]

a score=39239
s chr3           101045123 1698 + 160039680 AGCAGGTAAGCAAGAACTGTCAGTCTTTAATCCACAGCCTCACCTGGAGACCT-----------------------CTCTGCCCCCACATCTCAGAAGCCATGTCCACCTTAGGATATGGGGAAGTGGGCTTCCACTGAATC-ACAGAGGAGCCAAGGCTCCTAAAAGTCCTTCCCCAG-----------------TGGTGTTACCAGGCCAGGACTGCAAAGGCAGCAACTTGCAAAA-----CCGCTTTGGCCTGAG------CCAGGCCC----TAGAGGAAACACAAG--------GTGGA----------CCAAACTCTAGAAGCCTGAATGTATGTGCTG---CAGTACAACTCGGGAAGATACTTAGATACCCAGAGCG-------GGAGAGCTCACCGTCCATCTTCACAGTTATAAAGATGGGCCTGGAGTGGATCTCGGCTTCCCTCTGCCAGGAACCTGTCGGTGACCTCACCCAGGGAGTCACAGAACAGTAGTAGTTGCCAAAGTCCTGGTCCTCAGAGCCATGCACTTGCAGCAAGAATTCCAGCACGCTCACTCGCTCCAGGCTGACAGTACTCTTCCAGTCCCTCTGGCCTGTCGTCACGACTCCCTTCCGGTCCAAGGAGGAGAGGAGGACGGGAGCCTTGTCCAAGCCAAAAGAGTGTACCGCAAACCAGGATACATCGAAGGCCATGTCATCTGTGGATTACGGAGCCAAATGCTGAGGTCAGAGT-GTGAGCAGAAACGATGTACACGCTCCTGTGTGTGCAACCCTTACACGCTCCTGGCCAGGTCTGTTCTGTACGAACCTCCA-AGCA-GCCTGTGATGA------TATCACAGCCTCCCCTGTG--------------CCAAGGTCACACA----GCTACAGATAG--------TAGTGTGTCTAGC------CTGACCACTCCCACCCTAAAGAACCACAGAAAGAAGATCTGGGG---------------CCACAGACAGCCCTGTGTGTGAA------GGCTGGGCATGGCGTGCAGGGTCCCC------GAGCA----CTTCAC--------GCAGAAGAACCAAAGAC-----------------------------CGCACATAAAATAAATTGTACCAGATTTGAAGTTGTAGACAGCTTGGATTTTATTGTTCACTGTGGTTTGTGCTGTTTTATTTTTTTCTTCCCCCTTGTAGAAGTATTTAAGTTCAAAATAAGAGGGGTAAAAAAAAAGAAAATCAAGCTGAGAAAACTGAACACAG-TTAATAGTCCCAGAGAGTAAAGCTAGTGGATCATGAAGTTCTCTGTGAAACTGAGGTTCTAACAGCCTCAAATAAACGACAACGGGCAGAAGAGAAAGAGGA---TGGTACAGGAT--TAATTTACACAATGTGGAAACTGAGGCCACATGCTAAACCCAGACCCTCATCCCCACCCTGACTGGACCAACCCAAGCCAGCTACTGAGCTTCAGGTTTCATCCAGAAGGCATGTGGGGACTGTGGACCAGAAACACAGTCACATCTTAAACCTGCTTGGCAAAAttcctttttcaaaaaaaacaccgaggactgaacccagtgccgtgctgggcaagtgttctattggagctacaaccctggcccGGGACCTTTTATATGT----CAGCTTTTGCTGGACAACAAAAAAACAATAGTTATTCATTCAGGCAAAGTACATTAATAACTTCAAAAACACATTCTAAGGCAAACAGATGTCATCCAGACCCATGTAAGACAGAAGG-GAGCTCAACTCAAAGTGGGCATTTC--CAAACAGGTCCCAATGATAACTCCACT-----------------ACTAAAGCAG-ATCCCCTCTCTCCTCCACCTGCCCCA--GGGGCCCCTCAGCATAA
s HiC_scaffold_1 111048655 1754 - 233722169 AACAGGGAAGCAATGGCAGCCAGTACTTAAT-----GTGGCTTCTGGAGACCTGAATGATCACTTTCAATGCTACTCTCTGCTGTCCCCTGGCAGAATACTTGCCAAACTTAGGACACTGTAAAGTAGGTTTCTACAGAATTTATTGAAAAGACAAAAC--CTTGAAATTCTTTCCCATAAGTCTTGAAAATCATTTTGCGCTCCCAGCATAGGACAATAGAGCTGGGAATGATCAAGGGCTGGCTGCTGTC-CCTGAGTCCACTCCAGGCCCAGCCTATAGAGAAAGCAAGTCAGATGTGTGGAACCACAAATCTCAAACCATGGAAGCCTTGATACGGCAGCTGACACAGCAC------GAAAGACAT---AATGCCAAGAGGATCTGTGCGTTGTGCTTACCATCCATCTTCACAGTTATAAAGATGGGCTTGGAGAGGATCTCTGTCTCCTTCTGCCAGGAGCCTGTTGGGGACTTCACCCACGGAGTCACGGCACAATAGTAGTTTCCAAAGTCCTGTTCCTCGGAGCCATGTACTTGCAACAGAAACTCCAGCCCACTCACACGTTCCAGGCTAAGGTCACTCTTCCAGTCCCTCCGGCTAGTGGTCACAATCCCCTTCCGATCCaaggaggacaggaggacaggatCCTTATCCAAACCAAAGGAGTGCACCGCAAACCAACTCACATCAAAGGCCATATTATCTGTGAATTACCAAACCGAGGCCTGAGGTCAATGCAATGAACCAGAGAGACACACA-GCTGCCGTGCATTTAACATGTGTA--CTGCCAGCCTGCTTTGCTCCACGTGCATTTGCATAGCAGGCCTATGATGAAGGGACTACTATATTTGCCTCTGTGACAATGCCACTTATTCAAGGTTATACAACTCACTCCAGAAAATCCAGCTTTAGGGTCTTAAACACCCTACTGTCACCACCCAGCCTGAGCAGTCACAGTGAGAAGGGTCAGGACTAACTAAAGTGCCTCCATGGACAGCAACGAATGTAAAGCTGATGGGTGGTGACACTGTACACTGTCTCCCAAAGAAAGCAGGTCCTTCAACATGGAAGGCAGAAGAACCCAAGACTAGAGAGATTGAAGTCATAAAAAACAACATGGACATAACATTAACTGCACAAAATTTAGAACTGTAAACAATCTAGATTTTATTgttcactg---------------cattttttttt----ccttgcagaagTGGTTAAGttcaaaacaagagag-------aaaaaaacatcaaGCTGAGAAAATTGAACATAGTTTAACAGTCCCAGTGAGTACTGCT-GTGGATCGTAAAGTAGTCTGCAAAATTAAGGTTCTAACAGCCTCAAATAAATTAATATGGgcataagagaaaaaagacactggCACAAAGTGGTAATTCTCAAA----GAAGATGGAAG--ACAAGC---ACTCGGA-CCTCATCTCTTCATTG---GTACCAACTAACATCAGCTG-TCTGCTTTGAGGTTTATCAGACAAGCAAGTG--------------------------------AAATCCACTTGACAGTAT----------------GTACGGATGTATGCA---------------------TGTCATAT----------------------GTACCTGTATATATAATGCAGCTTATAC---------AAGAAGTAACGTATCTTCATTTAATAAAAGTATACTAGTAACTTCAAAAA-GCATTATAATGTTCAGA-Atgttatata-------ttaaaaaagaattcaagcTTAACTAAAAGCAGAAATTTCTACAAAATTATCCCAATGACAATTCCTTTTCTGCTCACTCTGAAAATCTAACACAGCATCTCCTTTTTCTCCCTATCACCACACTGTGGAACCTGAGCATAA

a score=19563
s chr3           101047805 833 + 160039680 CCACATACCCTGGT-TAGGTACTAGACGCTGATGTGTTCCGACTGG-ACCATTTCCAGAACACGGAAGTCACCTCACCTGGGT---------GAAATGCCTCACAGAGGCTACGGAACA----CCCTTAACGCTCAGCCACTCCGCCTCTGAGCAATGGCTGA--GCAGCAAGGACAGGAAAGTCCAGCTCCTT------AGCTGCCCTCGGCACC--AAGTACTC-------------------CGAGCATAG---------------------------TGACTGGGCCCCATTCTCT----TGCACCCCCACAGCACACTCTGGAGACCCCCCTCCCCCCCATGACTCACACTGCCTCTGCTCTGCTTC---AGA-------CCATGGTGCCACCCACGCTTGGCCGCTCCCACCCTGCTGTGACACAACAGTGCCTTGGCTCTCAGCCCACTTATGCAACTTTCCCACTGAGAATTCCCTCTCAGAGCCATGGGATGAATGaaaagagaaaaaaaaaaaaagaaagaaaaaagaaaaagaaagaaaTTACGATTTGTGTTTAATTATTCAGAATCTTCCACCCACACAGAGCAAGAGTGCAAAGTTCTGGAAAATTGTGATTTGCAAGA-TACCAGCTACCTATAGCTTTTGCAATTACATCAGAGAAAAG-AGGTTTACATGAAAGGCACAACTGGCGACCTATTAATTTGCTGAGAAAGAGCATTTGGAGGGTTTAATATCTGTATATCACAAATGAGCTTTCA-AACAGCACTGCACTATGCAAACTTTTAAGGAGTTTTTGCTTG-CCTTTCCCTGGCAGTCTTTCCTGCCTTTTCCTTCATTTCTACGTTCA-AAGGTACCTTTGTGCCTCTGCGCCTCGCA-GCTTTGGTACAGCAGCAGTTGCTCTCTTCAGA
s HiC_scaffold_1 111050902 864 - 233722169 CCCCATTCCCTGCTGCAGGTGCTGGCTGCTAAGGCTCTCACACCGTTACCTTCTCCAGAGGACTGGGCTTACCTGACAGAAGCCACATCCTGGACATGCCTTGCAGAAGTTAGGAAACATACTCCCTGACCCCTCA-------TGCTCTTTGGTAATAACTGACTTCAG-GAGGAGAGAAGAGCTTGGTCCTCTCGCTCAAGCTGAGCCATGCTCTGGAAGCACTCATACCCTCATAGCCCCTTGCAGACAcagatttgttctgtgtttttaacCTCTGCCTGACTTCTTCCTCAGCTCTACTCTACTCCTTCATGGGGCTCTCCAGAGAGAACCT---CACCAGTGGGTCGCTATG----GGCTCTGCTTCTAGAGAAGCTGACTCACGGCATGACCTGTGCTCTGCCAC-------CTACCTTGGCACAGGGGCACCTTACCCCTCAGCCCACTTATGCAACTCTCCAAAAGAGAATTCCCTCACAG-TCTGCAGGATGTGTGAGAAAA---------------------------------ACTAAATTATAATGTGTATTTAATTATTCAAAATCTTCCACCCACGCAGTCCAAGAGTGCAAAGTTCTGGAAAATTACGATCTGCAAGATTATCAGCTACCTATAGCTTTAGCAATTACActggggaaaaatatttttacactaAGGGCAAAACTGGTGACCCATTAATTTACTGAGGAAGAACATTTAAATGATTTGTTTTGTATACATTACAAATGAGATATAAGGATGAAAATGGCATAT---AACTTTTCAGAAGGATTTCTCTGCCCTTTCTCTGGCAAtctcttctgcttttattttcatttccacttCTGTATGGCACCTTTGTATCT-TCCATCTTTCACGTCTCAGCGCAGTAGTGGCTACTCACCTAAGA

a score=10300
s chr3           101048825 364 + 160039680 GGCCATGCTTCCAGAGGTCTACACACAGAAACACATGAGAACTCACAGAATTTGGCT------------AGCTTTGTGT------ATGACTTTGCTAGGAATGGGGTGGGGTTGGGCAGTGTC-AGGGTCACAGTGGGTGGTGGAAGGGAGAAGGGCAGGCCTCAGCAAGCTAGGCTCTTCACAGAATCGTTGGGGAAAGGCAAAGGTGGGTAAAGTCCTGCTCAGCAACAGGGACAACACCCTAAGG-----------CCTTTAAGACCAGAGGAGCCAA---TAAGAGAGGGATGTCATCTTGC--TTAA--GGCACCAAGCAGAGAATGCATGAGGGATGGGCCCAGGATTCTGAGGCAT-CTGTTGGCAAGGCTAATCTTTTCGGTAAAGAGAAGATT
s HiC_scaffold_1 111052325 391 - 233722169 GGCCACACTTCCAGCAGTCTCCATACAGAAACA-AGGAGAACCTGCACAGTCGGTCCTTTTGAAGATGCAAATCTGAATGAGGCCATGACTTTGCTTGCATTGGTGTGGGCCAGCACAGTGCCCAGGGCTAAAATGAGCAG----AGGAGAAAAGGCAGCCTTTTGTGAGTCAGGTTCTTCATGGGCTCTTCAGGAAAAAACAGAGGTGGGTACAGTCCTGCTAACCAACAGAGG----ACCCTAAGAATAGTAAATGTTCTTTCACACCTTAAGGATCAAAGGCAAGAAAGAGGCACCATCTCATCATTGAATGGAGCCAAGCAGAAAAGGTGTGA--GATGGTCCTACAACTCTTAAGTATGCTGTTGGTAACATTaatattttctgtaaagaaatGATT

a score=45048
s chr3           101050019 2596 + 160039680 GACAGACGACAGGAGGAACGTTTACAGAAGGCAACGGGGGTGGGGAAGGAGGAAGGATGGAGGGAGGTACCTGGGTCCAGCACAGCTCCTTCCACAGTGACGATACAGAACAATTTGATGAGATCTCCCCGGGTGACGGATGGTGTGTCTGAATGCACAGAGGCGTTAAATGTGGGACCTGGAAGACAGTAATGTGTAAGATGCATAATCTTCTTTCACACAAGCTCAAAATTCATTCCTAAAGCTCCAAGAGCATCTAAATGTGGCTCTCTTTTCTGGGAATCGGTCTACAAAAAAACAAAAAACAAAAAACCATGAACTAGGCCTTCTAAGATCTCCTTTC-TCTATGCAGA--GACAGTCGGATCAGGAACATCTACCTGAATTCACTCT------TGACTAACTCTGAATGGAACTTTCTCT---GCTTGACAACCACAGCTTTGCTTGAAGAATATGCTTGCTTCACGCCCCCCGCCCCCGAGCTGGT--AAGCTTGGGCTGCTGTCACATTCAGTGTAGTTCAAACTAGCCAGGGTGGTGTAGAGATCAGAGGGTCAGGAGCT-GACCGCGTGTGCTTTGGGTCACAGTTGGGCGAGTGGCCTCTGTATGTTCTGCAATACTGATGGGGACAGAACCCTGAGACCCCAGTGTTAAAGGGCTGAAACCCAGTTAGGAGAAAGACCCACCAATACTGGACATGTTTAGATAAAGTATGGT-GGGGCACTGAGAAAATG-------CCAGGATTTCAGGGGAAGCTGAGGCAGCTTGGAGCATCCTT-TAAAAGACCACCCAGGTTGGGGAAGGCAGGGTGTGCATGGGAGTGCTCTATACTTCTGAGTCAATTTTGC--TAAAATTGAAACTAAAGCCTTGatattcagatatacatatacatatcatacacaccatgtacatgtatatgcgtgtgtgtgtatgtgtatgtatgtatgtgcacatctagtataaactagcatcaaACAAAACAGAACAACATCCTCCATTGAGACAGACTTTGCCTCGC--ATCCCCCTGAAAATATCAGTGACTTAACAATCACTTTAAACCCACCTCTGATGCCTCGTAGGAAAGGGCATTTCATAG-CTCAAGACAAACTGATCCCAACAGCTCAATGCTTAACCTTATCATCTCAGCTTCTAAAATCCAAGAACAGGAAAATGGAAAAGAGAGTTCTAGGACATCAGTGCTATGAGATTCTACTTGTATTTTCAGGAAAGCATAGATAGGTGTCCAGCTCTATAAAGAGAATGCCACCAGATTCATCGCCAGCGCTACTAATCTAGCTCATAGAAGCTGAG-CGAAAGCTTACT-----TGAGGAATAGGGACATCACTGCTTTCTTGTTCAGATTACCAGAAAGGGAAAGTACCCCAAAGTGTGTTT----AAAAGCATCCATAAAAAGCTACTCACTCCATCAGGAGTGTGTGTGAAAGGTCACACTGTC--ATAAGGCAATGGGCTGAAGTGACTTTGTCTCTGTTCTCACTTCAATCTGATGACTAATAATAAGTCATTAAATGGC--TTTCCTAGCACTAAGGATATGAATAACTTGAGC-------GGTGAAG---AAAGGCTGGTTATGGA-----------------------------GGTAGGGGC--------GTT------------ACAAAATCTGGGGACTTAACTCC--AGGGGCTGAGAACACGACAGGATGGCAGTCCCAGGAACAGGGG-------ATGAACGAGGCAGAAGACAAACACATCATTTCCTTCAGATGCCTCAGCTCTGGCCCT-AGCTCCCTTAGTATCTCATACTCTGGACCTGCTCTGCCCAAAACTGTGTGGAGAGTCAGGGCCAGCCTTACTGCTCTGAGCCAGTTCTGTGGAAATGGCTGCCAA------GGCTATTTCTGTCAGCTCAGGGTGGCAGTGGCCATGTTCAAC------AGTAGATTAAGATTTTCCCTTAGATTAGAGACTCTGTAATAAACACATCTGCTCGGGACTTTCTTTGA-----------------------------------AAGTTTGAAAGCA-------------------TTCAGGTCCCTTCTGA----------GAG-----------AACCCAAGTGACCAAACACTGACATGCA---------GTACTGACTTATA----TATTTTTCTT-ATTTAAAACAATGAAGAAAGACTTGCATAATTTGAACAAATATCACTTTTCTTTATATTTCCAAAGAAAACCCT-----TCTG-GGTCACAAGTCATAACTCCCAATTC-CCTACTGGTGGCTGCCGTGGGAACCAAGGCAGGGCTTGTGAGAGGGTCTGTGCTCTGTCTCACTATGCAGACAGGGCTGGAGAAGAAGGCCTTCATTGTAGCAAACAATTCACAGTAGTGGATTTCCTTCTAATGAAATCAATAGCTCGATGTTAATATG-GTCATTATCCCAGAAGAATGGGATATTTAGAAATATTTTCATTATGGTCTATTTCTGTGGCAATTCTGTTTTGTGAAGGAATTTGTCTGGTTAACTTTGCAGACCAGAGACTATGACTGGACTATTCAGAG--AGCAGTCAGAGTCACTAGGGATGCCTGGGTTCCTAGTCTGCAGAAAGCATAGGGACCACTTGACTTGTAAGCACAAACATTGACACA-ACCATATTCCAAACTCCATCCCCACCCTAGGAAAAGGCGTCTAAGAGCAGCGTTTTCCTGTAAGCAAACTCTGCATCCCATCTGCATCTCCAGTCAAAG-GTCACGGCTA
s HiC_scaffold_1 111053131 2461 - 233722169 GAGGAATGATAtgagaaacattttcaaaaat--------atgggGGAGGGAAAAGAGTGGAGGGAGCTACCTGGATCCAGT---GCTCCTTCGACAGTGATATTGCAGACCAATTTGATTAGATCTCCCCGGGTGACCGATGGTGTGTCTGAATGCACAGAGGCGTTAAATATGGGACCTGGAAAAAAGAAAC-------ACGGTTGTTATTCACTTGCTCAATGTCCAGCGCCATTTCTATCCTTATCATGG-ATGtaaatttggttttctttcctggGAACTTTTCT-----------------AGAAACTCATAGATT-GGCATTCTATGATTGGTTTTCATCTTTTCAGAGGGACACACGCTTCAGG---CTTTACCCAAATAAACTTCAGATTAAGattaaaccaaaacagaactctTCCTAAAGAGTTACCATCAT-GTCTCATTTGAAGGCGA-------------CCCCCTTATCCTGTCCCAGTTACAGCCTGGTTTGGTTTTG-GTCCTGTGTGGTTTCCTGTAGGCCAGGTAGATTGGAAACCAGAAGGACAGGGTCTAAATTACAGATGGTTCTGAGCTCAG-CGAGTTAGTGGCCTCATTGTATTATGCGG-------GGTGCTTGAGGCCAGGGGTTTCTCTGTTTAAAGGCTGAAATCTAGGACTGAGGGAAAAATGCTGACAATCACCAAGTTTCTATAAAGAGTGGCAGAAGCACTT----GATGTCTCCCTCCAGTTTgccaggggaaactgaggcagcctaGATATTCCTTCCAAAAGTCTGCACAAGTTGAAG-ATGCAGGGAATATATAGGAA----CTCTACTTTTTATTCAATTTTGCAGTAAAGTGAAAACTG----------------------------------------------------------------------------------CTCTATAAGTCTAGTATAA--------CAAACATAA---------AGCCTCTATCCAGAAGGGATATGTCTTGCCTACCTCCCTAAAAATACTGTAGGtgtatttattacttttaacCAATCTATG--------------AGAGCATTTCACAGCCTTAAGCCAAGTGAATACTAAGAGTTCAATGTTT-ATCTTATCATCCCAACTCCTAAAATCTAGGAACAGGTAAACCTTAAAGAAGGTTCCCGAACC------CTATGGGATTCCCAATG-AGTTCCAGAGAAGAAAATACAG----------------------------------------------------------CCATGGTTGCTGAATCAAAAACTCATTAGAAATTAAGGATACAGGTGTTACTATTTTCTtgttcaga-------aaggaaaaaatacttcaaagtactttttttaaaaaacaaccagAAGAAATGAC---------CATGAGACTAT---AATAGTCGAATTATCCAATGAAGCAATTAGTTAAAATGG------CTAAATTTTCACTTCACCTTGATGACTAGTAAGACACATTTACCTGATTGTTTTGTAACACTAAGCACAgaattaatttgtgtttttctgggCAAAAGGTAAAGGATGGGTATGGAATACGGAGCACCACGGGGCAGACAGCCGTGGTAGGGACTGCCAAGGGTTTTGACTGACTAGAGAGCAGCAGAGGATTTAACAGCAGAGGGACAGAGATGGTAACAAAATGGCCATCCCAGGAACCTGGGTCTCCTTCTGG------------------ACATCATCTCCTCCG------TCAG--TAGGCTCTCAGCTCCC----TAT----TGGCCTGGACCAGCTCTTCCTGTATTAGTGAGGAGGCACAAGATTAGGC-TAATGCTCTGAGCTGGCTCTGTGATGACAGCTGGGGACATAGTGGCCA--TCAGTAAAGTCAAAGCAGTGCCCACCAGGGTGAATGAACAAAGAGGATTACATTTTTTCCTCAGATTAGAAATTTTTTggtagccaagtgtggtggtgcatgcctgtaattccaagtGAATGGCTAAGGCAGAAGGGTTGTtccgagtttgagaccagcctggatgacaaagtgagctcaagaccagcctgaactgcacagcgaggctctgtctcaaaacgaaatgaaaaaaaaaaaaaaaaaaaaagttctcataATGATTTCTGCTTCTATTGTTTTGAatttgaaaatgcaaagaaagactTATCTAGCTTGaacaaatgtca--tttttttgtatttccaaAGAAAACCTCCGATGCCTGAGGTCAGAAGTTACAGTTCTCATTGCTCCTACTGGTCATGGCTGTGGGAATCAA------------GAGGCAGTTTGTGCTACGGCTCCCAAAGTGTACCAGGCTGGGGAAGAAGGCCTTCATTGTAGTGAGGCATTCACAGCACCGGA-TTCCTTCTAAAGAAATCAATAGCTCACTGTTAATACGTGTCATTATCCCAG-----------gcttagaaatattttcattatggTCGATTTCTGTGGTAATGCTGTTTTGTGAGGGGATTTGTCTGGTTAGCTTCACGGATGACAGACTAAGGCATACACATTTTAAGCTAACAACAAGAATCACTACGGGTCCCCTGATTCCTAGTC--CACATAGTATAG------------TTTTTAATACAAATACTGACACAGATTATGTTTTAGCCTCAGT------CCTAGAAAAAGATGT-TAATAACAGAATTtttttgaaagcaaaaattaCAAACCATTTGCATGCCCATCAAAAGAGTAATGGTTA

a score=63127
s chr3           101056161 4247 + 160039680 [encoded data, 4710 characters]
s HiC_scaffold_1 111065171 4063 - 233722169 [encoded data, 4710 characters]

a score=31755
s chr3           101060412 648 + 160039680 aaagaaagaaaaaggaacactgac-tggggttcaggaaatgcaaggctttgctaag-gacagtgagtggcaga----------ggC----------------------------CCATGTCCCCAAAGGGC-------CATGTGGTTCCAGT---TCCCTAGTGTATGAGCACAGATTTCCAGTGTGAACGGAGAGTGAGGGTGCCTACACAAACATG-GACAGA-TGACTTAAGAAATT----AAACC--AAACTGAGCAGTGA-CAGGATGATGTCCCCACCTTCTGAGGCCCAGAATATGTTGACAGGCTTGGAGAAGACATCTTTGCTCTTCACCCAGCTGTTGTTCCTCTGCCTGGTCCAGGCAGACACAACACAGTAATAATTGCCCCTGTCTTCCTCCGTAGTCCTTTGGATCCGGAAATTGAATGTGTCTGTGTGCTCCTTAGAAAAAATAAACTCTCCGTCCTGGGCCCGCTGCTTGCTCCTCTCTCCATATCTCAGAGTCCAGTCCCCATCCATGACTGCGAGAAGCTCACTGGCCACCACGTCGTCATTGCGACGGG-TCATTCTATAGTACCACGACACGGTAAGTCGGACACCGGCCTCCAGACGCTTCGTGTCTATCACCCGGCACTGCAGTTCCGT-GGGGTCGTCTGAAAACCCGGGGACCTTAGAAGCGTTCAGGTAGACCTGGTATTCTGG
s HiC_scaffold_1 111069671 693 - 233722169 aagaaaggaaagaaatattcaGACATAGGGTTCAGGAAACAGGATGTTTTGCTTAGCGACAGTGAGTTGTAGGATACCTTTCTGGCACTGGGAGTTTTGGACAGGTGGTAGTTACTAAGCCAAAAGAGGGCATACAGTCATGTGGTGATGACGCGCCCTTAGTGTATGGGCATGATTCTT--------------AGTGACTGTGCACCTGGAAATATACAACAGAATGACAAGCgaaattttaaaaaccccaaaatgGATAATGAGAAGAATAAAGCCCTTACCTTCTGATGCCCAAAATATACTGACAGGTTTGGAGACAACATCTTTGCTTTTCACCCAGCTATTGTTCCGCTGTTTGGTCCATGCAGATACCACACAGTAGTAATTGCCTCTGTCCTCCTCTGTAGTCCTTTGGATCCGAAAATTGAATGTGTCTGTGCGCTccttagaaaaaataaactctCCATCTTGGGCCCGTTGCTTGCTCCTCTCTCCGTATCTCAGTGTCCAGTCCCCGTCCATGACTGCGAGAAGCTCACTGATCACCACACCGTCATTGCGCCGGGTTCACTCTGTAGTACCACGACACGGTAAAACGGACACTTGCCTGCGTGTTCTTCATGTCCACTACCCGGCATTCCAGTTCAGTGGGGGTCGTCTG-AAACCCAGGGGTCTTAG-AGCATTCAGGTACACCTGATAGTCCGG

a score=80228
s chr3           101065443 4525 + 160039680 [encoded data, 4964 characters]
s HiC_scaffold_1 111074353 4453 - 233722169 [encoded data, 4964 characters]

a score=49802
s chr3           101070202 1560 + 160039680 gtCACATCTTCATTATCTTATACAGGCCCGAGTTG--------TATTTGATGGCATGCACAAATTACATTTCTAGAGAAAAC-ATGTAGGGTCAGT-CAGCTGCCTCAGTTTCTGGGCAGAGAATGCAGTCTGCAGACTGTGACTAAAGGCCTGTGGCTGTACTCAGGCCCGACTCGTCTCCTGACAAGCGTCCAAGCAGCTGCAAACCATGAGTCACAGAGACCGGGGTGAAGG------CTTAAGAGGAAGACAGA-GAAGAACACAGTTGTTTTTATAATGTTTACACTCCTGGTGAGCTCACAATTATGCAAGGGCCTCTGCATACTCTAAGCCACGGTCATGCCTGCATACAGTTCTGGG-TTTGGATGCATGGGTTTT-ACGCTATC-------------------------------TATATGTTGGGGCAGGCCTAGTCTGTGTAAAGCACACAGAAGCTCTGGG------GCTCCATGCATGCACTGGAGATGTGCACTCATGTCTT---TCACAATGGCACCGGCACTCTGCAGGAAAACGAGTGGCAGGACCCTTAGGATAATCAGGGAGTCTTTCCCACAGTTTAGCCTCTTTATTTCCCCTCAGTCTCTGGAGAACAC-GTCACCAACAAATCCCTT-CAGTTACAA-AGCCCGTTCCCTCCCAGAGCTTGCC-CCTGATGTCTGACAGTGCCTGTACTTCCCCCAGGGTATG-TGGGATCAATACACCAGGACTTCAAAGAAACCCTCAGAATTGGAGTGCAGGCAGAATTTTCACAA--AAAAAAAAAAAAATCCCAGAGCTAGGACTCAGAAGTTGGAGGGGGCGG--GGAGGGGAGGAAGCCAGAGTGGGGATTTGACAGCACCACACAATGCACC-AGGATCAGAGCTGTGAGACAGATTCAACTCCAGAGATGAAAACTCTTCTCTTGGTGCTGACAACATCTGTTTTATTTTGAAGGTTGCTAAGGAGAGTCCTGGCTGGGCCAACATTGTTCCAGCCCAGGACTTCACAGAGCGCCTCGGAGCGCAGGCTCCTGACTGCAGGAATGAAAG-----CAGATAAGCC-TGCTCCTTTCGCTCTTTAGATATCAAAGCCCCACTTTGCTCACAGGG-CTACC-ACCCCCCCCCCAGTCTCAGTCCCAACTAGCCTTTCCCTACCGCTT---------ACTCTC-TAAGGATGCTTTCCCTTG--CACCGTACTACCATTCA-CAAGTTCCCATCCA-------------TTTCTTAGGGACAGACAGACAGGGAGTGCACCCTTGAGCCAGCATAGGACCTCTATATAAG-ACAGAGAAGAATTCCATAGGAGCTGGAGACATGCACATG-TAGGAGGAGGGTTAGCATCAGACAGAGGATGAAGTCTTTTACTGCCCTTTAAAGATCAGTGTTGCCTCCT--TAATCAAAGACAAATCAAGTGTCTTTGTCAGGGCTCAAAGCCCT--------------------GTG---AGGGCAGTGAAGAGC-----TGACCATAGGCTGACCACTGTGGAAATGAAGCAGGTGGGGAGCCAGCCACACCCCAC-------CAGCCCCTCCCACC----TAAGCTGAATTGAATGATCAAGGCCATTACCACCCTTGAACAAAAGGAGCTACTACACATTCCTCCCCATGGTCAGATGCATAAGAAAAAAGA
s HiC_scaffold_1 111079912 1673 - 233722169 gtCACTTCT--GGTACCTCATGAAGACCTCAGTTGAGGCATTACATATGCTCACTGGTGCATGTTCCGCTTCTAGAGACAACTGTTTATGGTCAGGACAGGcacctcagcctctgagtagAGACCACAGTGTGGAGGTCCTGACTAAGTGTCCGCTGCTGAACTTATGCCTAATCTGTCTCCTGACAACTGTCCAAGCAGCTGTAGGGTGTGAGTCACTGGCACAGGGGAGAGGGAGCAGATTTGAAGGGCTGAAAGAGGAAGAATGCAGTTGTTTTCATAACACTTGC-CTGGTAGTTTGCTCA----TGCGCAAGTTTCTCTGAATATTCTACAACTTGAACATTAATGTTTGCAATCCTGGTCTTCCTATGCAAATATTTTGACAATATCATGGTCCTGGTATACTTACCCACTCAACCAATATTTATCGAG---TACCTAGTCTATGCAATGCTTTGGGAGGTTGTGTGTACATTGCTTTCTCCAGTCA-GGGAAAAGCACACTGATGACTTTGATGACAGTGGTGTTGGCACTCCACAAGAAAA-GAATGACAAGATCCTAACTATAATAACAGAGCCTTTTCCACAACTTAgtctctttatttcttctcattctcTGGAGAACACAGCCACCAACAAATCCCTTCCAGTTAAAAGAACCCACTCCCTCCCAGAGCTCCCCTCCTGATGTCTGACAGTCCCTGAACCTCCCCCGAGGCATGCCGGGATCAATACATGACTACTTCAAAGAAGTCTTCA-AATTGGAGTGCAAGCAGCactttcaaaactaaaaaataaaaaatcctcgAGCTGGGATTCAGAAgttagaggaggagggaggagcagggagagcCAGCGTTGGGATTTGACAGTGCCACACAATGCACTGAGGATCAGAGCTGTGAGACAAATTCAGCTCCAGAGATGAAAAATCTT---TCGGTGCTGAcaacatctgttttattttgaaggttgCTAAGGAGAGTTCTAGCTGGGCCAACATTGTTCCAGTTCAGTACTTCATAGTGAGTCTCTT-GCACAAGGTTCAGACAGCGGGAATAAAAGCTCACCAGACAAACCTTGCTGCTTTTACTTTGCAGATATCAAAAGATCACTTTGCTAACAGGGACGACCAACACCCCACCTAGTCTCAACCGCAATTGGACTGTCCCTTCTGCTTTTGTGGCTCACTCTCTTTATTACTCTTCTCCCTGTCCTCTCTGTCCCCACTTGCCAAATCCCCATCTACGCCAAATAAAGGTTTATTAGGGACAAACAGACAGTGACTATACCAGTAACCAGACAGAATGTTTTCATGCAGGAACAAGGAAGAGCTAAGCAGAAGCTG----CATGT-CATGACAGGAAGAAGCATAGcat----caaagaaagaaatcatttcctGGCCTTTACTGATCTGTTTTGCCACCTAATCATCAAAACAACACCAAACG-CTTTATGAGGGCCCTAAGCACTCATGGACTAGTAGGGAGTTGGTGCTCAAGACAAGGAAAAGCCTAAATAGCCAATTGC--ACCTTTATGGTAACATAGTAAGAAGTGAGGCTCTCATACCCCACTACACTACATCCCCCACTGCCTTCTTAGATTTACTTATGTTTACAAGCC----ACTAACCAAAAATTGGAAAACCTAGTGTACATTTTTCCTAGTAGgcaaacatatagaaaaaaaaa

a score=29087
s chr3           101072681 687 + 160039680 GAGCTCAAGGACACTTGTC-TGAGCCACACA---TCTACATGGGGCAGAATGCCCAGCACACCACACACTTCCTGAGTGC---AGGAAGGATTAAGCAGAGAAGCTAAATGGCATTCCTCAAGCTACTTACTCACCTAGCCAGGTCACGCTTACACCAGACGGGGCAGACATGGCCTCTGCCACCTTGTGCCAGCTCCTGTTGTGTCCAGGAGCCCAGAGGGCCACAAGGCAAAGATAGTAGCCCGAGTTTTCTTTGCTAACATCTCGCACCAGTAGATGGTAAGAGCGGGTATCCACGTGACTGAGAGCAACGTGTGGTGAGCTGTGGACCAGGGAATCACGGTCAAGCCGCGCCAGCATGTGGGAGGCAAGTAAAGAGGTATCGGGTGTCTTTTTGAAGTACCATGTCACCTCAGGCCGGACATCATCCACACGGTCTGTTGTGATGTTGCAAGAAAGATCCAGGTCCTTTCCTTCAGTCACAGACACTGTCCTGGGCACGGCCAGTTGCAGAGCTGGAAGAGGAAAAACAAGCCCATC-GAGTG-ATCGAGTGACGCGTGTCCCCTCTCCTCCCTTCTCCTTACCTCCCTC---------ATGGTCGCCCCTTTAGGT-TGATTTATGGTGTT-AAAATTAGAAGGCTTTGTACA--GTTGAAAGTGCTAGAGGAATAGTTAATGAATAAATTCATGACACACACT
s HiC_scaffold_1 111082726 700 - 233722169 GAGCTAAAGCACACTTGTCCTGATACAAAGAATGTCTAAACAATGCAGAACACAAAACAC-CCAGACTGCTGCAGATAGCTCCAGGAGGGATTAAGTGGGAAGGCTGACAGCCACTTTGCAAACCACT----CACCTAGCCACGTCACACCCACACTGGCTGGGGAAGACATGGCCTCAGCCACTTTGTGCCAGCTCCGGTTGTATCCTGGTGTCCAGAGTGCCACATGGCAGAAATAGTAGCCAGCATTTTCCTTGCTAACATCTCGAACCAGTAAGTGGTACGAGCGTGCATCCACATGACTCAGAGCAATGTGAGGTGAGCTGTGTACCAGGGAGTCACGGTCCAGTCGTGCCAATACATGGCGGGCAGGCAAGGTGCTGTCAGGCATCCTGCTGAAGTACCACGTCAGCTCGGGCCGGATGTCATCCACACGGTCTGTGGTGATGTTGCAGGACAGGTCGAGCTCCTTTCCTTCAGCCACAGACACGTTTGTAGTCACAGCTATTCGCAGaacttgaaaacagaaaacaaatacatcTAAGTACATTGGATCA-GTTTGTCCCTTCCACACCTCCATCTGCAACCCCGTCTCCCATTAGATCATCTCcttttaaattctcatttctggtattaaaaatgagaaaaccttGTATATCTTTGTAGGTGtctgagaaatatt---ttaatgaatttataaaacacatt

a score=12805
s chr3           101073568 776 + 160039680 TGAAAACTTCTATGCTGATG----AGCCAGGAAAGTGAAACCAGACAATTTTCCTAGTGATTCAGCCCTTCACAACGTGATGTATGTAGA------------------------CTACAGTTCCTTCAC----------------------------------------------------------------------------------------------------------------------------------------AGTACGACGTATGTAGACTATCATT-----TTCTTAGACACACCTGGCTAAACCTCAAGCAGGAGAC-ACACACTGAACCCCAAACCCAATGAGTTCTGGATTCTCCATG--CTACTGTTCTCTCATGACTGGGGACAATTAAAGTAAG------CTATATTTAGGTAAATACTTGAAGTATTGAGTGTCCCTGACTCAAGAGAGGTCTTGTTCAGCATTCCATTGCCAAAG-CTTTTAAATGGAAACATTTTACTCTATTCAGGGCTTTTTTTTTTTTTTAAAGATGTGAAACATCTGTAATCAGAGTGGAAAA--TTTCAAGTTACAATGATGCTCTGGGAACTGTCAC-TAAATGACAGACAGCTAGCTAACTTCTCCCTGTGGAGTCAAATGAGACACAGTCCCCGTCTTCCAGCAAAACCCATTCAGCAGCCACAGCTCTTCCCAGGAAGCTCAGGGATAAAGACTGGTGCCCAGTTCAGAAAACACCCATCCTAAGAGCCTATGGCCTCTGGAAGATATTGCTTCCATATGAATATTTACAAATCTTGACATATATTTCAAACAATTATTTTAAGCCAAGTCCAACATCCATCCCAACACATGACAGAAAATGAGGTGGGCATAGTATTAGGAAAAAGGGGTTGAAAGTTG---TTTATCCTTCTGTCTCTTTACAGATCAAATGCATTC
s HiC_scaffold_1 111084232 870 - 233722169 tgcACAATCCTAAGCTGACAGGAAAGCCAGGAAAGTGGAACCAGATAATTTTCCTTGTAAGTCAATTCTTCAAAATATAACCTACTTAgagaagccgggcatggtggtgcacacctatattcccagcactcgggagcctgaggtaggaggatcattgtgagttcgaggccagcgtgggttacaaagtgagctcaaggccagcctgaactgcatagtgagatcctgtctcaaaaaaaaaaaagacaaaaataataaaaaataaactattatgGTATACTTAGAGTATGATTTATTATCATTAGATATGCCTATGTAAA-CTCAATCATGAAACAATATCCTAAAACCAAAACGCAGTGACTTTTGGGTTATCTGTGTACTACT-CCCTCTCATTAGTGCAGATAAGTAAaaagaagatttttgttttttagacaaagCACTGAAGTGTTG-GTGTTACAGACTAAAGGCAAATCTAGTTTCACCATCATCTGTCAAAGTTTTTTATGTGGAAACATTTTACTCTACTTAAA----------------AGTGAAGCTGAACATCGGTAATCTGAGTACAAAAACATACAACTTGTGATAGTGCTCTGGGAACAATTACTTAGATAATAAATAGCCAG--AATCT-------TGGAGATTTAAGAGACACAGTCCCTGTCT---AGCAACAATCA-TCGGCATCAATTCCTATCTCCAGGAAGCTGAG------------------------------ATCCAACCCCAAAGCCTATGTCCTTTGCTGTATGTCATTTCCATATAAA------------CTGACA-ATATTTCAATCAAGTATTTTAAGCCAAGTTCAATATCTAACTTGACAGatgagaaaaactgaa-----------attagaaaaaggaatttaaaagtcaaatttcACCCTCTAGCCACCTT-----CCCAATGCTTTC

a score=150458
s chr3           101074360 9500 + 160039680 [encoded data, 10688 characters]
s HiC_scaffold_1 111085756 9228 - 233722169 [encoded data, 10688 characters]

a score=11490
s chr3           101084238 387 + 160039680 tgggctgtggtaaggctcagatgaaccggtgcacagtacttacaaca--------gtgcctggtgtgtggtgagggtctcaggtaatgttTGAGGTGGGAAACTCTAGAAGAAACTTGACCATAACCACTCACCTTG---------CAAGGCTCACAGGAGAATTTCCAAATGTGTAAAAATTTCGTATTTCTACCCCTTGGCGAAATGTCTCCCAGGGCCTCCAGGTCTGAGCCTACTTTCCTTCTGAGGTTTCTGCCTTTATTTCTGGCGACTGGAGTTTTGGAAATAAGTCCAGCTCATTATCTCAATTCTCCCAGCTTTTTCCCACATGGCTACCAGAATCCTCTCTTTTCTTTTAATTTTTTTTAAACACACAAATTC--TGTCATCCCATGGATCAGACT
s HiC_scaffold_1 111094990 377 - 233722169 TGAATTGTGGGAAGGGTTAAATCAGTCAATACAT-----TTGCAACATGGTGAAAGGACCCAGTGTGTGGTAAGAATTTATGATCATCTGCTAAGTGGCCACCTCTAGCATAAACTTTGCACTAATCTTTCACCTTGTTTCCCCGGCGAGGCTTATAGGGGAATTTCCAAATGTGTaacc-ttttgtatttttatcagtTAC--AGTTGGCTCGCAGGGCATTCAGGGATGAGCCTGTTTCTCTTGTGAGATTTCTATCGT-GTTCCTGGTGATTGGAACTCTGGAAACAAATTCAGCTCCTTGTCTCAATTCTCTACCCTT----CTACATGGTTGCCCAAATCATCTTTTTT----------------AACATAGCAATTCTATGTCACTCTGCTGTTCAAATT

a score=9081
s chr3           101088611 381 + 160039680 ATTCTCATTTAATT------------TTCTTCTTAAGTCCACAGG--------GAAGAAAAATATTTAGTACAACT---GCAGTTAACTTCATCTATCATTATTCTA----ACCTGTAAGTCCTCCCCTCCTCCCA-AAATATAAAATTCATATTTTTTGTACCCTGGCTTGAAGGAGCATCAGTATTAAATATGACATTCAACTATGAAAACCAT--GTAGCAGACATTGCAAGTGATTATCTTCTTC---------CTTCTCTACTTTCCATGCTGCCTTGTGAGTTTAGCCTTTTATCTTATTTTAAGGTTCTCTTTGCGCTTATATGTGTATTTCATGGTAAGTTCTCTCGAATATCTGGGGGAGGAGGTAAATAAGGCAGAGATCTAAACAGTGGGTAACTCAGATCCCCTTGTG
s HiC_scaffold_1 111101308 400 - 233722169 attCCCTTTTAATTCCCTGGAATTTTTTTTGCCTAAGCCTACAAAAACCAAATGAAAGCACGTGTCTAACATACTTCTCACTGCTAACTCCCTCTCTTTTTACTCCATTCCACCTTCCAAGCCTCTCTACTGTCAATAAATATAACATTCATGTTTCTCTTGCCTTGGCTTGAAGAAAAATCAATACTAAATATGATGTTCGATGATGAAAATCATTCAGAGCTTAAATTTCCAATAATTATCTTCCTCTCATACTTTCTTCTCC-CTTGCCTTGCTGCCCTTGTACTTTGGATTTT----TTACCTTAAGGTTTTCATTGC------ATGTGTATTTCACTGTATCTTGCCTCCA---------GAAGAGAGTAAGTagggataaattttaaaagatcagttACTGAGATTTCTTCTTG

a score=31511
s chr3           101090316 2956 + 160039680 aaatttaaattcctgaaataaacactcct----taactaatattaaggagtcactaagtggttgtgttagcagattagccgtagcataaaagcatccagta--agtggatcaaaaca-------------------------------cacaaagaaagaggagaaatatgaggggcacaataaaaaggttacaaatgtgtgtgatagagtcccagaaggtgtgagagagaaacgaaattcttaaagaga--------------------------------------------------taatggctgagatttttcttaaaccgaacgatactatgttgcaaaaacaagctacattatatatcacaaccaggataaatccgcgagtgcagctcagtaaaattgctgagaggcagagaagggagccatagcacaacagataactgacattcaacagaaa--caacgctcataaaaccatggaatggcaggcttaaagtgatttttcaaaaagtaactgccagcctagggaagggggatggggtacttttaagtggaaagcaaaataaatatgctttcaaccaattcaccacaaggaaaagataattaattggcatcaagaagaaacactaagtggagttcttcagacatagagc---tggttcatcttgaaagcatgaaaacacaagcaggtgaaaagataacagaaatgactatgtgggtagcactacagaaactgaccaaataatagcagggacatcttttgggttcaatatatatgcaTTCTATATACATAATGGAAACATATGAATAGCAGAAAGAGTGCActcagtgggcaaagacacttgccaccgatcccgatagcctgggtcagccggggaactgacttctgtaagatgtcctccgacTCTGTGTTCTCACATAATACACAACACCATGCAAAATAAATGAAAATGCAATCTTTTTTTAAAACTCAGTAGTAGACACTGAGACGTCAACAATGGACAGGGTCTGTTGTTTTCAGCAACtttaattaaacttaaataattaaataaaGGGTACATTTAATTAAATAGCTTATAAAAATTCAAGCAAAATTAAAAACTTAGGCAAATTTCAACTTTTCTCCATTAATTCAGCTAAAAGTAAATTTGGCTGAAACAGTTACTGGTTAAATGTGTAACGAGGTGTGTCTTAATCTCTAGGGTAACCACAAAGAAGAAAGGCAGGGGTGGGGGGGCTGGAGggggatgcacatctgaaatcacagcacttaagaggtaaaggcaggaagattagaagccagcctggtctgcatgagattctattgcaaacaacaaccaaaCAAAATAATGGAGCTGGGAGTGGAGAGGATAACAAGTTGGGGAAGCCATAGAAAGAC--ATCTTGCACCTAAAGTCACCAGAGCACCTCCCAGGGATTTAGTTTGTAATACATTCTATTCTGTCTGCTT------TATTCAGAGC---------------------------ATACTATGTGTCTCTGACA-GCCATGCTCTGAGCTGGGCACT----GTTCAGAGGACTAACACACCAGCAGGTAGGAGTCCCTAGCTTACCTCAAATTAAGAGG--AAGCCCAACAGACAGCC--TGAAGAGGGTCAGGCCAGCT--TAAGTGAAAGACTGAATCCCCAGCCTGG-TGCCTTATGTGCTGAGCTATCAGAGAACCC--------------CAAGCTAGATCCGTT---------------------CTGCCTCTGTGGATT--------CTGTCTGCTCTGAGA----GAAGGAGAAAAACAAATGGAAATTTCTTCTGAAATATTTCATATTCCCCAATGGCAATGCGAAGAAGGTAGGCAAGAAAGCAATAGAAAAAGGAGTCACGAAGAAACAGAGTTCTA-AT------------AAGTAGACAGGTAAGAGATGGTAAAAAGAGGCTTGTTAAAGTAATTTCATAggggtcagagactcggctcactggttacctactgctcattcaggataggagtttggtttccaatggcacggtgggtagctcacaagcacctgtaactctagctccagagcatctgactctcttctggattccaaaggcacccacataaacacacacacacacacacacacacacacacacacacgcacacgcacacgcacacgcacgcacacgcacacgcacacgcacgccagtgcacccacaagcacGAAAGGTAATGTCATGGGCAGATGGTTAACAATGGAGAG----CTGACTCCAGATTACCATCTCCCC-TCTTTAGAATATGCAAGAATGTAATCAGATGCCTTCAGGATCCCTGCCTCT---ATTTGGAGTAGCTGAGGAAAGGCAGGAAACGCCAGGCAGGCAAGGCTTTCAAGGTAAATGACTCCACAAGCAATGTGCTCCGCAGTAAGTTCTACCTGCAACTGCTGGAATCATTAAGAGAAACGAGACAATAAAGACCAAACTTTA---TTTATTGATCATTTTCCACCTCCCCCTGATAGCCACGGGAAATAATTTTATTTCTCAGGTTATCATGAACATTATTCTAAATCAAGACCTGCAGAGTGTGGCCTACCTACAAAGCATTCTTGCAATCTGTTCCTATTATTGCCCAAATTT--TTATC-------------------------ATCTGGCTTTCAGATTGGAGCCATTTGTAAGATATGTATCAGCTGCTATGTTGACAGCGGTATA--GGCAAAGCAGA-GCCCTGAAA-TAAAGACTTGGTGATGCTTCAGTTATCC-------AAGACACTGAA------CCGGCCAGGCCCGTACAGGAG----ATCAGGTGCCTTCGGAGTCCTAGAAAGATCCCCCTGTCCTCATGTGAGCTGGAGATGAACACACACACACAAGCAAACTTGCAAATCTTAGTAGTGAATTCCTCTACTGGAGTTCCTGCCTCAACAAATGAAAACCCTTTG--TCTGCCTAAGTCTGCCTCTGAGAGATCTGGCATCAGGGGAGCATGCCAATGTTCACCCAGACAGTC----CCTCGGTGATGGGAATGCTGTGTGTACACATTAAACAAGTTACAGCCAACAGAGAATATGAAATAAAGTCACACATGGCAGTACTTCAAAAATGCCATCCCAAAGCAAATATGATTCTACTAGAA------TTGGGCTTATTAAAAAAAA
s HiC_scaffold_1 111103957 2594 - 233722169 aaattgAAATTATAGAACAAAAAAATCCCACCACATATAATATTAAGAGTTCACTAAATGAACCTGATGGCAGATTAGATggggcaaaaaagaaaatagtataagtaatccaaaataaaatccagagtatgaaaaaaaagataaaaaacacaaaaaagtctatgaaataaatgagacacagtaaaaaggttaaaaatatgTGTAATAGTATCCTAGtaggaaatagagaaagaataGTATCCTAATGGGAAACAGcgagaagaaataaaatagaattaggTGGAATTAATTCTTGGTAAATAATAGCTAAGGTTTTTATTAGAA-----GATAGCACGCCATAGAAGCAAGATGTGTTATACGGCACAAGGAA-ACCCTTCCCTAGGTACATCATAGTAAAACTCCCAAAAAGCAGAGAA-----CAACAATACAACTGATAGCTGACTTTTGACACAAAGACAACGTTCATAAAATCATGCgttgtcatttttaaa-------taaaagaaataactgcCAGCCAGAGTtctatatatagaaaaatattctttgaaagg---AATATATACACATTAAACCAATTCTCAGTAAGGGAAAGAA-------TAACaccaaaaagaaatactaaatggAGTTcttcaaacagaaagaaaatggccCA-------AACTTGAAATCA--------TGAAAAGGTAAGA---------------------------AGGCTAAAGGAGTAACAGAAAGGATAACTATGTGGGTAACTCTA-ATGAATATTGTCTATATAATATAA---------------------------------------------------------------------------------TGTCTTTTGGGA---------------------TTCAAAATATacacat--------------aattaaaatata------------------------------------tcaacaGGGGAAGG----------------------TGAATAAATTGGAGC--TTAAATGTGGATAATCTTTCCTTA------CCCTGAAAGT--------GATAAAAAGGT---------------------CCATTAGT--AGACACCAGTAAGTC-----------------------------AGTGATATGTATTCTGGTCTCTATggcaaccacaaaaacaaaag--------------------------------------------------aacaggtAA--------------------------------------------------CAATGA---------------GAGATGGAAG--AACAGTATAAGTACTTGACTAA----TAAAAGAACCAAAATTTCAGctaaaatcatataaatatttttcaggtatttatttagTAGTGTATTC-AGTTTGATTAATTATCAAATCTTCAAATCTTTCGCTGGTACTGAGTAAAAGGAGGAATACAACGTGTCTCTTACATGCCATGCACCAAATCAGGCACCCTTAATTCAAAGAAC--ACAGTCCTTCAG-TATTA--CCATAGTATCATGCATATGAGGAAACAGAGACTGAAGGAAATTAAATGCAGAGAGCCCTAACAGCTACTAAGCAAAGAACTGAAACCCAGGTTTATCTGTCCTCTACACTATACCATCAAGCAACATGAGTTGCTTGCCATCAAGCAACATGAGTTGCTGAGTTGGTTTGCCATCAACTGTTTCTATCAATTAAAATTAACTGTCTTTTCTctgaacaggaagaaaaaaaacagctTGAAATTCCCTATAAAATATTTCACGTTCCCCAGCCGCAATGTGAACAAGGTAGGCAGCAAAGTAAC----CAATGAGTGACTAGGAAAAGAAATCCTACATATTCTCAATATGAAGTAGAAGGctgagaaaaatggagaaaggg---aTTAAAATAATTTC--------CAGGTGTTCAACTCTCTTCGGATGTACCTACCATCTTTATTAGAGGT---------------------GACATTTCACACAtgttcatactttaaa---aaaaaaaagtgaagcga-TATGTATCCCAAAG--CCCTgcagaaata-----------------------------atttttagaagCCCA------------------------------------ACTGCTCTAAC--------------TTCTCAGCAGAAGACAGTTAACAACCAAGAGTTCACTGGTTCTAGCTTACCACCTCTCTACCTTTAGAATATTCAAGAAAGGAGTTAAATGCCTTCA----CTTTTCTTCTGTCATGTAAAATGGATGAGGTTAGGCAAGAAA---AAATCAGGCAAGTTTTTCAAGGTAAACAATTACTCACACATCAACCTCACGAG---------------------GAAATCATTAAGAGAAACAAGCCAATAAAGactcaactttattttttatctgactCCTTCCACTTCTTCCTGA-ACccatgggaaataattttaattctcagGTTATCATCAACATTATTCTAAATCAAGACCTGCAGAGTA-----TATTTGCAAAGCAGTGTTGCAAT-TGTTTCTATTATGGCTCAAATTGTATCATCTCACTGGACTGCCAAGAAGCAAACAATCTGACTTCCCAGTCTGAACCATTTGTGAGATAAATATCAGTGATTA--TTGAATACAGTGTACCGGCAGGGCTGATATACTGAAACCAAAGAGTTTATGGTATTTCAGTTAGTTTTGTAAAAGGACATTTAAATCCCTCTTCCTGAGTCCTTACAAGGACTGTGTCTGGTGGTTATGGATTTCCACATGGAGTTCCCAGTTTCCACGTGA---GGAAATGA--ACACAGACAAAGTCAAATTTACAAACCT--GTTCTGGG-TCCTTTACCAGAGTACCTGACTCAACAAATGAAAAATCTTTGTCTCTGCAAAAATCCACC---AAGAGCTCTGGCAGGAAGGGATCATATTAAATTTCATCTAGGTAGTCCCTACCTAAGTGATGAAAATGAACAACGTATACCTTAAACAAGTCACAGCAAGCAGAGAATGC---------------------ATAATTC--AAATCCTATCCAAAAGCAAGTAAGGTTCTACTAGAGGggcctttgtatttatttttaaaaa

a score=35808
s chr3           101094830 1865 + 160039680 ACTCTCAGGTCACAACGAACACACACACTAGACCGTTAGCTAACTGAACTCA-------------ACCTGACAGTGTG--------CTTCCAGTTCTGGGGCCTCTGAGAGACTGTGGCAGGCTGAAGCCAT---AAATCTTTAATGCTGCATTGTGAAACTGTGGGGCTTAG-----------------------------------------------AGtgtgtcaacttagctaagcacagactactctcccgaa--tcatcctccccctgtaactctgggctagtgttggacaggacagaacttcacctaagatttgggaggtagggggaagccaagggccttctgctctggtggtcctcaagtttaaggc------atggggagacagagcagaagagcccttgagc-tcagcttgtctttgctctttgt-ctcctgtctcttgccagatgttgctcttatggattccatgacgccacccccacccgccaagaccactgggtacttggatgccagcacagaagTAAACAATAAGGTAGATATC---CTTCAGATCCCCAAAACAGtc-----tctggag----actccaactgcttgcc--------------------cacccacccaagca-caggagggccaatcagtgactggctcctgaccaactgattcccctttcaa---cctcacttcttc--ggctcttatggtagttgtgtgaaacctaactcctatcccataatattcatagtagctccacctccctactggaacttaacCTAACAGAGCAAACCAAGTGCTGAATC-TATGCCCTTAAGGACTTGGTA-----CCAACCAGAAGAGCCACTGGATGGTTACAGCACTGCTCTCT---------------------------------------------------------------------GCAGTCT--------------------------------------------------------GGAAACTATGCTCACACGATTCAGTACTCACCCAGGAGAGGATTAAATAAGGAAACTGAGGTCCAAAAATGACATATGACCAAATGATAATTTTCTTTTTTTAAGGAGATGcaaaaaaacaaacaaacaaacaaacaaacaaacaaaaaaacCCACCTTGAGGCAAGCTGTACCGTTGACTAGACAGAATAACCCAATAAACACAAGATGATTTAAAATGTCTCTCTGACCATGGACCACAGACA-----AGGCTGAGGCACCAGCTATTC-ATCCACAAGGATTACTTGAGCACATTCTATAAAATGAACAGCTGCTGGAGACC-AGGCACTGCCTAGCATCCCTCGCCACTCAGCCATGCTCAATCCTCTCCACCTACAAACTGGCCAGCACTGCCTGCCAAGTTCTGTGTGAACACCTGCTTCT-CTCTGAGCCACACATCTAAAGAGAAAAGAGG-CTAGCATCAGGCTTAAACTTGCAAAGGGAC---AAAGATGCCTGAGCCGAACCCAGGGTAACACTCCCTGACTCCCTACATGG-------TTAGATTCTGTATTA--------CTGTTTCTTA-AACCAGTCTTTCGTCTTCCTCTGACTCATGCATCCCTCC-TCCAGCAGGACCTAGAACCTGTTCTTGAAGTTCAAAGGTACTGG------GGGTGGAGTGGAGTCTGT-CCCAGCTTCCCGGATAAGGCTCAGTAAAGAGCAGAGTGTGAGCCTTTGTCATTCAAGGAATCAGAT--GGGAAGATTCTGAGTTTGTGTGGCTTTTAAAGAAAAGATGGCCATTAATAAGACAGGAATGAAACTGCCTTGCATTCAGAAACTCTTTG-TGTAGACTCACTGTGTGTAGA--------GTCATAGGAA-TTGTCAGGCCCCCTACTGGCCTATAAACAG----------------GCATTGGTA------CAGCACAGATGGGGGAGGGGGTGGTCCTGCTACCAGA------------AAAACATCAAGTAATTAA-------AGGAACCTAAAGCATTTCGGGGA---AAGTCTCAGCCTG--AAAAACAAACAAAAACAATTGT--------GTTCAACTCTATCA-CATGGCATGAGAGACTT---AATCAGATGACATTTTCCCAAGACTCAGCCTTTTCCATGTAAAGACTCTACATGTAGccaggcatgccccacctt
s HiC_scaffold_1 111110757 2100 - 233722169 acccccag--taccacacacacactgacTGGATCATTAACCAAATGACCTTCTCCCTAGTAAAGCACCAGATCATATAATACACCACTGCCGGTTCTGTAGTCGCTGAAAGATCCTGGGAGGCCAGTGTCTTGTTAAATCTGTAATTCTACATTATGAACTTGTAGGGTTTTGTACTAAGTCGTTTGGCTAAAGCTACTTCTACTACACTACAATTTTCTACTGTGTCAATTTGGCTGAA-----GCTACACTTCTAAAAGTCATTTTGTCTTTGCAAGTCCAAGTTAGAGTTGGATAAAATAGAGCTTCACATGAGATTTGGGAGGTGGAAGTAAAGCAG-------CAGCTTTGGTG-TCCTCCTACTGAGCGCGGcaacagacagaggcagagaggcagaggccGGTAGCACCAATTTGCCCTTGCTCTTTCTGCTCCTGTTTCTTGCTAGATGCTATTCTTGTGACT--CAAAATGCCTCCA---------AAGACCATCGAATGCCTCCTTGTAAATGCAGAAGTATGCAACAAGGCCATTACCTTTCTCCAGACCCCTACACCAGTCCTACCTTTGATGTCCCACTCTACTTGGTTCCCAGATTCTTCTATGAATTTGTCACTTACCCTCACTTCAGGAGGGCCACCCGGTGACTTTTCCCTGATCTATCAACTCTCCTTTCCAGGCCCTCActttttccagtttcttccaTCAAT--------ATGTAAGTCTAATTCCACAATATTTATAATGGCTCTGCTTCCTGA-TGGAACCCTAACTAATATAGTAAAGTAAGTATTAAGTAGTATGCCTTTAAGGATTCAgtaattgattaa--aaaaaaaacaccttacaTTTATAGCACTGCTTTACAGTTTGAAAATCCTgctcatgggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcagtcgtgagttcaatccccggtaccaataaaaaggaaaaagacaaaaaaaaaaaaaaaaaagaaaatcctgctCACATGATTTAATACTCAACCTTAACACGATTAAATAAGGAAAC--AGGTTCAAAGAAGTTATGTGACCAAATGATAAT----------------------AGAAAACTAATG------------------CAAAAA---CCATTTCGAGGCAAACGGTACTGATGAGTAACCAAAATAACTCAATAAACACGAAATGATTTAAACAAT-TCTTTGTCCA-AAACCACAGACACAAAAAAGATGAGCCA-----TACTCTATCCACAAGGATTATTTCAGAGCATTCTATAAAATCAACAGCTGCTGGAGGCCTAAGCACTGCCCAACATCCCTCACTACTTAGCCATTTTTAATCCTCGTGATGTTCAAATCAGCCAATGACGCCTGCCAAGATCCGTGTGAACACCTGGTCCTCCTTTGAGCCTCTGGTTTCACGAGAATAGGGGATTCACACTGAGGTTAAACATGCGTATGGACATGAAAGGCACCTGAGATACATGC-TGCTGAAATTCTCTCCCTCTCTACCTTGGGCTGCTTTGTACTCTCCACTATTTTGCTGCTGATTCCTATACCCACTTTCTACCCTTCCTTTTGCTTGTCTGTCCCTCTGTTCAATAATACCTGCAGCCTACCCTTGACAATGACAGACCCTGACAGATTGTGGGAGGCAGTGACTATGCCCAGCTTTCCCAGTGAGGCTCAGTAAACAACAGAGTGAG----TATGGCTTGCAGGGAATTGAACAAGAAAAGACCCTGGGTTCCTGTGTCCTTT-----AAGACTGAACATCAACCTGG-AGGGACAAAAATGGCTCCCCTCAGAGAATTCTTTACTGCAGGCCTATTGTATGCAGAAACTCATCATCACATGAAGTTGATGAGCCAACTCTCAGCCAAGTGTCAGTGTCAATGACCCCAGAGCAGTGGCAGCCTCCTAGCAGAGGTGGGAAA-------GTCACCCAACAAgatgaaaattctttaaaatatccaGTACATAAGAAAATGAGGAATTTGGAGCACTTTAGGGAAGGAAGGCATAACCAGGTAAAAACAAGTAATGTCAACTATAAAATCAGGTTCAATTTCTTCAGTAATACATGAGCCTCTTTACACTCATACAGAATATTCTCAAG-CTCAACCTTTTTCCCCTAAAGACCTGAC-------------TGCTTCACCTT

a score=32659
s chr3           101097103 1385 + 160039680 AATAAAACAAACAGCCAACAAGCTCTTATAAACCAGTGTATTTCTTTGCCTGCATTCTTCCATCTGCTTGGAA-----AACCCACCCCCTCTCAGCCAGACAAAA-CCTACTGAATTTCAGGACCTAATGAGCTTAAATGAGTCCACACTGCTGAAAC-----------------------AGCGCCCA-CCCAGACAGTGTTCCTCCGGTGCCTACATAGGGCCAGCCCACCCATGAGCATTCTGGGCTGTCAGTCTCCCTCACTGGATG-----TGAG-ACTAGAGGGACA--GATGGCTTCCTGCACACCAA---ATCCCCAGCCCAGCTTGATGACGTGGTACCTGTGGCCACTTCTCACTCCGTGAGGTCCTAGAATCTCAAAGGCATCATAAACCTTTGGCTCCTCACCCTGGTGGGTTAACGGG---TACTTAATCCCATTAATTTTAGAAACAGTCCCTCACTGAGACATTTTCAACCAAGCTCTTGGCCGAGCTCCTCACAGAAAGTGAAGGGCACCTGTCTGCAGCAAGTGTGGCACCTGGCAAAGTCAACGAGATGAGCTGCAAGCAGCACAGCAAGTGACACCTGGCCAGTCTCCATATTCTCAACCCAGCTCCCAAGATGTCA----CAGTACTCCACTTTGCGGTAGT-------AACAACCAGGTACCCAAGTGCTTCAGCGCCTTAATGAAAGGCTCTCTCT-TAGACATGCCACTAAAGCCTTTAGAAAGGCATGCACAGAGCCAGGGGTGACCCTGGCAGTGACACCAAAGAGCAAAGCAGCACACCTGCCTTCTTAGCCTTTCTGCCGAAGCTCCTCTGTCTGAAGTAGCAGAATGCTCTCCAACTTCCGTGAACTCTCCTAAACTTTCAGCCTTTAACAATCGCTGGGCATGGCTCCGATGCCAACtctctct----ccactgatgtcaaacctgtcagctatggaatcaagggaccgtgtctatgtccttatgtgccccaggttctagaataatgactggcacagggtagataataaataatggctt-gagtgaGGCAGACAGTGAGACGTGGCATGGGCTTCAGGCAGCAGCTTCACTGTCCTACCCTGAGACGTGGCTCAGAGCTGGCTGCCTGCTACAACAGTGATGACAAGCAGACGGTCTGTGGTTGGGACCAACCCAGCCACAAGGTGCTGGAAACAAGCACTGGTGTGAAGGAAGTCTG-TTCTCTTCACTGTGAACA-----------CTAGGAGGAGTCTTGGAAGTGGAGTGGGGGTAGCAGATGCTGTTGTACGATGGGAGAGGCTATGCCAACCCCACAAAGAGAGGAAGGGGTGGGGACAGTAAAGGGACAATACATACTGAGAATCTATGAGGGGTGTGTCTTACATGCAAGCTGCCAAGAGATGAACAGAGGCATTCCACAGGAAGGATGGAGACTTTCTTA
s HiC_scaffold_1 111112888 1322 - 233722169 aataaaac------ctaacatgagcTTATAATTCGGTATATCTCTTTTCCTGTGCTCTGCCCTCAGCTTAAAATAAATCACCTACCCCTTCTCTGCCAGACAAAAGCCTACTGATCTTCAGGAC------------AATGTGCTCACACTGATGAAGCCATTCTGGCCTTtgtccagcctcagcctccagcccagGTTGAGGTCAGAAGGTGTCTGCAGAGTGCT-GCTCACCCACGA----------CTGT--GTCTTCCTCCCTGGATGGACCCTGAGCACTTGGGAGACACGGACCTCTTCCTGCTCATCactacagccccagcccagctGCAA--------ATCTGATGACACTCCTATCTCAATCAGCTTCTCAAACCTTAAAAGCAGAATTGACCTTTGGGTTATCATCCAGGTGGGTTAACTGGAGATACTTA-TCTCATTAATTTCGGAAACAGTTTGCtattaatacattttcaaaaaagcTCTTTGCCAAGCTCATCACAGGAAGGGAAGTATGTATGTTCGGAGCATTTATGACACACATCACAATTAG-ACGACCAGTTCCTAGCACCTAAGGAAATGACAC------AATCTCAAAATTCCAAATTTAACCACACTAATTTTATTAACAGTTTT----TTTGGGGGACTTGTACAAGCCAACTATGTCCCCTAGATctt----------acaaaagcttttcaatatgGATATGGAACTAAGGCTTTTGAAAATGCATGCACACTTTAAGAGCAGACAAGGGTGG-GGCACAAACAGGTGCAAGGGAAACTCTCAATTTATGACCTTTCTGCAAAAGCACCTCATTT--AAGTA---------CCTCAGACT-------GCTCCCCTTAactcttggctttttttttttttttttttttttttttttgccacctcTCTTTTTGCCCACCATATCTGAGGCTGGCAGCTGTAGAACTGAGGGGCTACATCTAGGGCTTTATGTGTCCCA--TTCA--------GCCTGGTACAGGGCAAAGGATAAACACTGGTTAAGAACtagacagagagagggaagaggccCACGGTACAGGGAGCAGCACCATGGCCCTGCcctgggatgtggctcagagCTGGCTGCTT--CACAACAGTGATGACAAGCAGAAGGTCTGTGGTCTGGACCAACCCAGCCACAAGGCACTTGAAGCGAGCCCTGGGGCTAAAGAAGTCTGAGTCTCTACATGGGGAATATGAGTCTCATGTCAGGATAAAGCCCAGAA---------AGGCAGCAGATG-------------------------------CCACAAAGGGAGGAAGGGGTGGAGGGAGGAAAGAGACA----ATAATGAGAACCCCTGAGTCGCCTGACTTACACACAAGCTGccaaaggaaaaactgaaaaaaggcaCAACAAGACtgcaaaccttttta

a score=85560
s chr3           101098945 3754 + 160039680 [encoded data, 4321 characters]
s HiC_scaffold_1 111115104 3971 - 233722169 [encoded data, 4321 characters]

a score=146320
s chr3           101104430 5505 + 160039680 [encoded data, 6099 characters]
s HiC_scaffold_1 111120481 5715 - 233722169 [encoded data, 6099 characters]

a score=29724
s chr3           101110466 1055 + 160039680 GGCGCTTTGCCAGCAACAAACACAAACTTTCCCAAGCCCCTCCCCGCTCCAGGTAACGGAGGAGGCGCTGGGGCCACCCGCTTAAAGGGGAGGAGACGCCCGAGCCCACTCAGCCTTCCCCTCGGGCCCCCAGCCCTCGAAAAACTTTCCTCCGACCTTTAAAAGTTGGCCTGGAAGACTTGTCTGGAAACCTCATCTTTTGGGCCCTATCCCGGGACGCCCGGCATTCCTTCGCGGTGGAATCCCCA-CGAGTGTCT-------CGCAGCCAGCAACCCACACGTACACC--CTCTGGTCTCCAGCTAAGCATGCCACCAGCCACCTGCTTAGCCCTTGCTAAAAATAATTACACAGATAGGAATGAAAGAGCTTCAAAGGCAGTGAATTCC--------CACCCCCTCATGGTCCAGAGGCCTGATGTGCTTG---GGAGAGTTGGCAAGGGACTCTCAGCCAAGCATCAAATTCAACAAGGCTCTCTAACCCACCACCCTGTAGTTGGGTGGGCCTGCCTCCTTCCTGGCC---CACCTCCCTCCTCTCCAGGGTCCCTGTGGTACTAATTAGAACAACTTCCAACTAAGGTACCCATaaaagaaaagaaaaaaaagaaaagaaaagaaaagaaaaCCCACACCATCTATTATTAGCCGTAGTGCTTCAAATGGTATGTCTGCCGCCTGAGACTATATTCATTGCTTTAAGTGGACACAACTGGGTTTCCATTAAAGACTCTTTTTCCTCCCACAATAGAGTTTTGTGCTTTGGATTTGAATACAAAAGACTCCACAGCTCTGGGGGGAAAA--TCAGCGTTCCTTGTTTAAAACGTCCCAAGGATGAATCAGACATTCAGAAAGGCTCACTG-GTATCCAGTGACCCCCTCCGTCGCCCGGGCCTTTCAT-TAATATATGTAAAACAAATCACAGATGTTCCTGGGGAAACTGCCTTCTCTGGTGCAGAA----------CATTAAGCTTGTTCTGATTTCCA-CAAGCGTTTCTCGTTTCTGCCAACTGACATGCGACTGACTGGCCAGGTGT----GAACCCTTCCGAAAGAGACTCCT--AAAATTGTATTCC
s HiC_scaffold_1 111126784  983 - 233722169 GGCGCTTCGCCAACAACAAACACAAACTTTCCCAAGCCCCTCCCCG--CCAGGTAACGGAGGAGGTGCC-GCGCCACCCGCTTAAAGGGGAGGGGGCGCCCCAGCCCAC-CGCCCTTCCCCTCCGG-GCCGGGCCCGCTGGAAACTTTGCTCCGGCCTCCAGAGG-CGGCCTGGAGACCACGTCTGGAAATCGCACCGCTCTGGCCCTGTCCTGGGACGCCGCGCGTGCCTGCACTTTGCAGCCCCCCTCGCGTGCCTGCTGTGCCCCACCCAGGAACCCTCACGCACGTCTGCCCTGCTGCCGAGCTCAGCACCCCAACTGGCAGCCGTGGGGCCCTCGCTAGCAATTGTT---CAGAAAGGACTGAAAAAGCTGGGAAGGCTTGGAGGGCCGCGGGCCAAACCCGTCTATGG--CACAGGCCTGG-GTGTTTGCTCAAGGACTCGGAGAAGGGGAATCTGCCCGGCC--------------GCCCTTCG------CACCCTGTAGCTGG--------GCCCTCTTCCTACCCACACGCCGCCCTCCTCCCCAGGGTGCCTGTGGCAGCAATTAGAACAGCTTCCCACTGACACCCCTTCTGAACAATTCAAA-----------------------------------CTATTAATAGCTGTGGTGCTTCATATGGAATGTAGTC--TTTACGACTATATTTTTTGCTTTAAGTGGA------------------AAACCCACCTCTCC----------ATAGTTTTGTGCTTTTGATTTGAATACAAAAGTCTCCTCAGTATTGGGGTAAAAAATGTGGAGTTCCTCATTTGAAACTTCCCAAGGATGATTCAGACACAC---AAGGAACACTGCCCGCCCcgcgcccccccc-----cccgcgcCTTTAATACTGTATGTGCAAAACAAATCACAGATGTTCACGGGGAAACTGCCCAAACTGAGGGAAAATCCTGCTTTTTGTTCGGTGCATTTTTATTTCCACCAAGTGTTTCTTATTTCCATGAACCAATGTG----TTTTTAGCCAGGTATAAACAAaccctttagaaaaaaaaaacttaaaaaatttatttc

a score=52699
s chr3           101111782 3488 + 160039680 TTAATTTCTGTCTTGCCACCAAGCCTTTCCCAGAGTTTCCCCCACCCCTA-----TCCATGTTCCTGTTGTTC----TTTTTCCCAGAATTTCTGTAGGAAGGTCAATTTTCTTTTGTTTCTTTCCATTCTATCAAGCCTGAATATGAGCCTCATGTTAAGTTTTGAAATATGCTGGAACTACGGGAAAACGTAAGGCCTGGCTCTTCCAGCAGCTCAGCCTTCAGCTCATCAATCTTTCCGGGTTCTGACCACCCAGAATGCTTAACGTCTGGCCTGCACATTTTGGCACTTGATCACAGTCAGCTCAGCACACTATGTATACTGCTTCCACCTCTGCCTAATAACTGGAGGATCTAAGAGGCGGACACATTGTCAACTTGCATC-CCCTCCTCACTGGAGAGGAGTTCTGTG---------------------CCCTTTGTTTAACAGACAAAAA----------------TCTGGACCTTGGAAAGCCTTCCACATGCAGTCAGAGAAGAGACT----------CTGAGCTAGACCCTGGAACTGCAGCCCTGGTGAGTCA----GTTGCTGCCA-----GTGCCCATAGCCTAC--AGGGTAATTT------------AGTGGGTGTGGCAGCAAGTGCAAAGTCCAGTCACGACCCACCCAGGAAGCAGTCAGTACTGGAGACGTTTTTC---ACTGCCTTCCCCAAAG-CTTAACTGTATAGTAAGTCAGG------CAGTCCAGGAACTCACTAGATGGAACCTACATGGAGGGACTTACAGTAAGTG-----TACACATAACATGATGGAAGGGGGAGGGGAATCATTCTCTCCTCCCATCTCAGCACCCAAGTATTATTAAACTAATGGGACATTTTATAATCACGGTAATAACTGTGGTGAGCAACTGAACTGGTAGGAATAAATGAGACTATCCAGGCAAGGCAAGTGCAAAGAAGGCTTAAGTGGATCCAGGCTGTCAGCTGACTGATTGGCAACCAGTCAGCTGTTATCATGAGAATCCAC-AATGAGCCACTGATGTAGCAGAAAA-TAAGCACAAATTAATGACAGCAGGCACTTGGTCCTA-TTACCATCCCTTGCGCTT-------ACTACCAATAGAT--ACAATGTTTCCGACT-AGGAAGCACCGCACC----TGCCACAGAGGCCCACAGTAGCTCCATTCA----------------------TCTTCGTGGGACAGGCATTTATTTGCC-AGTGAGTAACTTTCTACACAAGTAACCCTCTTGCCCCAACCTGTGGTTCT--GTTTGGTTCCTGTACAGGTTTGCCAGAGGCAACAAGACTCACTTTCTAGTAATCCTAATTAACCCTCCCCCACCCTCAAGGTGG---ATGAA-CCCAACTTGGGTTTCACTCAGCGACCATCA-----------AGGGCACCAGTCCCAACCACCCTTTAACCACCTGATAATAAACATCTGTTTGCAGCCAT--GGCCTTTGAATAGCCTACAAAGGTCCTCACATTC---CCTCATCTGAAACAGGTTTTCCTACTGAAATTCAGcaaaacaaaacaaaacaaaaACACTGTGTGGTTTCACTTTGAGAATGAAAGTCTTAAAATGTTCCCAAATAAATGAGTTAACCAATTTTTCTTAAGACTCATCCAGATGTGGTAGGTTTACCCTGTTCCTGCCAACAGCCTAT--ACATGGCCTCCAAATGACTCTGACCTCCATGGTAGTAGGTATTT-GGGAAAATGGTGTATTCTATCAAAACATTTTATCCCAGTAATTGCTTTCATTCAAAA----CTTTCTTCTGCGCCTGGAGGTAACATTCCCATGGAAATTAA----GGGATTACTAACCTAAGAGAAATGTAAAGATTGGGGACATTGCTTAGAGGTAAGATATTTGCCTACGCTCATTCTTCAGCAACAGAAAGATGGTGGGAGGGAAGGAGGGAAAGAGAAGGGGGGAAGCATAAATGGTAGAAT---TAGAAAATGGAATTAGAGTTTTAAAAACAGAGCGAATGATGGAGAAGGAAAGCCCACGTCT--TGAAGAGTGAGAGTTGGTGATTCTGTAAGCTCTGGT-------------AAGCTGTGG-CTGC--------CCTTCTGACAGACAAAGGGG---GTGAAG--CAGTTGGCTCGAGGCCTGCTCATGCTTTGTGATACCCCTCTGTTCCCCCACACTACCAATTCTTATCCTTTCTGCTGCCCTAAAAGATCAAGGTGGGAAATGTTAAAGATGATGTTCCTAGG-GACTCA-AGCTGCCCCAAGGCCACCTCCGTGGAACCAAAAGTATCCCAAAAGTACTG---------------ACTGCCCACAAGGCGTCCACATCTACAGGG-------------------TGAAGTAAGAATGG--------AGGAGGAAG-TCCTGCCATAAAAGCAATCTAAAAATGTAAGCCCTGGTGTGAAGTCCCTGGGGCTCTGGCCCTGGAGGGGC---------TCCTCTTGCAGCA--------------------ATGGAG-------------AAGAGAGAAAagaaaggagggagggagagagggagggagaaaagagggagaaa---------agg----------------------agggtggaggag------aaaggaaggaaagacagtagaaagatggagggagaga--------------------ggaagggaTAGCT---------------------------AGTTTGTACCCAAGGCTATCCCC--------TTCTGGCCCTCC----------TCTTGCCCTCATATCTAG--ACAAAGCCAGGCAGAGAGCTATTTCATCTCTTAGGACAGCCTTTGTGCACATAAATGTAAGAGGCATGTGGAGGCACGGGAAGGG------TGGGGTGTGCT-----CTTTCTTCTCTTTCCTTCATCT--------GTTCCTACTAACTCTC------------TGGATCCGTCATCAAGAG-------------TGGATGTGGCACCTCAGTCCCAAGCAC---AAAGGCTTTCCA---GTGATACTTATAAACCAGACAACAAT---GACTGtagagtca-cagg-------------------------ctaaaagacagggtctccgctaaaatctgattttcaagcaatcaaaccaaacctttttaat----aatatgccctaaacattatatgaagtacacttatattgaaaagccattgttcattagtctgaaactcctattcagct--cagcagcccatggtttgatttgctTGAGCCTATGGGCCCTCTTCCAGAGAAACGATCCCTTATATGGAAACAGGCCCACGGA-AGGATTGGGGAAGACAACATGGAACTCAGAGAAAGCTATCTTTAGATGGTTTTTTGACGTTTTATGCTTTAAGGAAGGAATCATATTGGTTTGCAATGTTCCAAGGAGTCACTGGTTAAAA-----AAAAAAAAAAATGCCAAGAGACCCTGCCTACTTTGTAATGGCCAGCACTAGCTCAGAGCTCTACGGAACTACTCTGTATC--------CTCTCATCTCTAAAACACATTCATCCTAAAGTTTAGCGCCTTCCT------GAGATCTGTTAAGAAGTTTGCTGCATTTGGAGGAGCCACGGGGCAGCTAACTGGGAG----GATGCCCTTT----CCCTAAGATGGGCAGTTCTTCCAAATGCAGC------------------TTACTCTT-------GCAAAGCTTGGTCTAACTGTTCACTCTTCCACCCAACAAAAGCCAGGAAGGGCTGGGCTGCGCATCT--CCTGCAGC--------CCAGAGAAGCTCATC--TGCAGACGCCACTGTT-TACTGGGAAAATGTCAGCCTGCTTTCCTTGCCACCTACCTGCTGTCTACCAAAGAGAACCC----ATCACTTGC-GTTCTAAACCCAAAACACACTTCCAGTACACTTCTCC
s HiC_scaffold_1 111128598 3741 - 233722169 ttgattCCATTCCTGCTGTCAAGCCTTTCCCGGAGCTGTTCACCTACCCAGTGATTCCTTTTCCCTGCCTCTCCCAATCCTTCCTAGAATTTctgcag---------ttttcttttatttc-----attccgTCAACCTTGGATATAATCCTGATGTTAAAGGTTGAAAGATGCTGGAGTTATAGAGAAA-----GACCTATCTCCCCCTAAAGCTCAGATGTGGGCTCATCAGTCTTTCCCTGTCTTCACCACACAGAATGCTTACTGTCTGGACTGCACATTGTGGCACTTGATCATAGCTGGTTTAGCGCA----ACATACTGCTTCCATCTCTCCCTAATAATGCAAGGATTTGAGAGTCTGGCATA----AATCTCACATCTTCCATGTTACTGCAGAGTCgatttttgcttaaaataaaaatcccCAAACTTCTTGTTTAACAGACAAATACAAGCCTAGTAGTGCCCCTGGTACATAGTAGGTCCTCATCATACATTTATAGAGTGAATTATTGCCAACACTGGACTAGATCCTTGGACAACAG---GGGTGAGTCAGACTGTTCCTGTCATTGAGGTACTCACAGTCCACATATGGTGACTTAATAGTTGTAGCAGTAGGTGTGGCAATATGTTCAAGGTCCAGTCATGACACGATCAGGGAGTGGGTAGAGCTGGGGAATATTTACAGAATTAGCTTCACAGTAGCCCTGACTCTGCAAGGAGTCTTGAAAGATCAGT--AGGTGTTAGCTATGAGGTACAGATGGGAACGAActtataataaatatgtattatatgcAACA---------------GGGACACA---TATCCTCACATCCCACCA-CCAGGTGTTATT-AATTAATGGTGCATCTTATAGTAATGCAAATAATAGTGGTGAGCCATGgaaatggtaagaataaataaaactttccaggTAAGGCAAGTAGAATGGGGATTCCAGTAGTT---GCCTGTTGG---------TGGTGGGAAGTCATCTG-TGTCATGAGAATCAACTAAAGGGCCATTTTTGTAATAGAAAGTTAAGTGCAAATTAATG-CTCCATTCAGTTGGTCATAGCCACCACACCCTTTGCATGGCCTCGACTACCAACAGATAAACTATGTTTCTAACTAAAGAAACCCAGCACTGTGGGGCACCAG-----CACAATATGTTAGTTCATGACTCTGGAATCTGATGATGCTTTTCTCATGACAGGCACTTATTTGCCGAGTGAGTAACCTCCTATACAGGTAACCTTTTG--CTTAACTAATTGTTCTCGCTTTGAGTAGTGTATAGGCTTGCCTGGGGCAGGAAGACTTTCTCTCCAGTAATTCTAACTCACTCTCGTTCA-----AAGGAGGAGAATGAATCCTAGCTTAGGTTTCCTTTGCC--CCATCACAATGAGCTGCAGGGTGCTGCCTATACCAGCCTAATTATCTCTTGGTTACACATACGTAACAGCAGGCATTAGCTCTCTTAAATTACTATAGGGGACCTCACACTCTATCCCCACC--AAACAGGCTTTCCTGTTGAGATC---------------AGACGAAAACACAATATCATTTAACTTGGAGGGTGAAAATGTTAAAAGGTTCTC-AATGaatgaattttctgtttcttc-taagATTTGCCAAGAT-TGCTCTGTGAACCCTACCACAGCCACCAGCCTATCCACATGGTCTCCAAATGAC-CTGGCCTCAACTTCAGCAGGGTTTCAGAGGAAGAAGTGTGTTCCATGACAATACTTCATTTCCAAAATCATTTGCATTCAAAAGATTCCTTGTTCTGTGTCCAGGTGTACATTTCCCCAGTGAATTAAACATGGGATAtgtaatcaaaaataaattt----------------------------gatattc----------------------------------------------------------------------AATCATAGAACCTGTAGAGAATAGAATTAGAATTATAAAGG----------AGTGGGTAGAGAAAGCCTGCATTTTCTGATGAGTGA------GTCATTCCAT----TCTGGTGGAGCTACGGGGGAAACTGTGGAATGTGGGAGGAGCCTGATGTCA-ACAAGGGAGCGTGCTAAGTACAGTGTACCTAAGGGATGCTCCTGCACTGTGA----------CCTCCCCGCTTTAGTCCTCCTCATCCTTTCTTCAGCCCTAAAAGACTAAAGTGGGAGGTGATGGAGAAAATGTTCTTAGGTGACACAGAACCAC-------CCACCTTCGCCAAGTCAAAAATGTCTCCCAAACACCGCCCCCATGGCGAACACCCACCCACACAACAT-TACTCTTTCAGGGACATCAGGGTGGAAGAACATgaggagaaaatgaaatagaataggaGGAGGCTTTTGCAGCAGAGGTCCTCTATGAGAACAAGGCCGCATTAATAGTCC--GGGGTGCTGGCCGTAGAAAGGCCATCTTATTTCTTCTGTCAGAAGTCCTGGAACTCTGCAGAGGATGGGGGACGACTGATACCAGGAGAGCAAAGGAA--ATGGAACAAAAGTAATCAAGAGAAGAGAAGCATAAACCATTATGTAGAGTAGCACAAATATGGTACCTTCAGGGTGAAGGTATCTCCTAAAATGAATAGAGGCAGCAGAATCAAGGGTAAAAAGACAGTGCCAACATTTACAGAGGCTAGAAATAACTGATGAGGACTTCTCAGTGTTGGAACAGACTCTTTACCCAAGGCCATGGCTGCCAAATATTGTGGTGCTCAAAGGTGCTTGTCTTTCCCTGACACCCAACTAGAATGTGAGGAAAGGGTCTTTATCTCCTCTCAGAAAGGTCTTTATCAGCCTTTACACAAAAACCTTCCCACTCCACTTGAGTTGTTTTTCTGGGTTGTACTAAAAACTAAGTTTTAGACACTACATTTTGAGAACAGTATTTATCAGCTACAGTGCAACCAGAGTAGAGCTGCCAGCTAAAAACCTGAAgccagccgggtgtggtggtgtaatcac-agcacttgggaggctgaggaaggaggatccttgcaagtctgagaccagcctgggctacaaagtgagcagagcaagaccctgttttaaaaagaaaccaaagaaacagGAAGCCCGGTAAAATTTAACTTTCAGataaataagaaacacatttttagTATTAAGTATGTCCCAAACATTACATGGAGCACATTTATACTAAAAGAGTATTCTTTGTTTATCTGAAACTCAAATTCAACTGATActcatctttaattttatttgctt-aatCTGGTAGCTCTCATCC---------ATGCCTTATATGGAAACAGTTTCTTTTAGAAGACTGGAGAAG------------TCTGAGTAAGCTTACCTCAggttg--ttttgaagttttgtgttttaaaagagaAGCAACTTTGCTTTGGGATATTCCAATGAGTCGCTGGGTAAAATTTGCTGAGAAAGAATTG------------GCCTAGTTTGTAATAACCAGAGTTGGCTTAATGCTGATGAGAGCTGCATTACATAGGGATGTGCCCTCCTTCCTAACAAACA-CCAGCCAGAGGTTAAAAGCCTACCTATAAAAGGAGCCAGCCAAG--GGTCACTATGTGAGGTGGGGCCACAATCAAGCAGATAGAGAGTAAAGGTTATCTTTATAACCTCAAGAT-CATGATTCATCCAAGTACGGCAAACTGGACTCTTTCTAGTCACTCTCCCCCGGAACAGTGTTTGTCTCtactgtcttccttttcccctaacTTAAGC---------CTGGGCTGGATGTTTGCCCTGCAGTGTTAGAGGACAGTGAAGGTCCTCTATGTAGATGCCACTGTTACACTGTGAGCAATTAGGATTAC-TCCCTTGCTCCCTACCTGTTTCCTACTTGAAGGACCTTGCAGATCAATTGCTATTCTAAATCAAGCAT-CACTGTCAGTggatttcttc

a score=64069
s chr3           101115907 2378 + 160039680 TCCACATTTTTCCACTTCTTCCTGACTCAGTATCCCCTTTAGCTCAGCTAGCCAGTTACTTGCAGGGTACATTGT-GCTACGTTGTCTGTCTTGGGGTGACTG------------TTTTGC--TGTCAATGATTTCATGGGGACGT-AGGGACTGGCTTCTCATTCCAACAGTGGC-----TAGAGCCCCACCTTATGACACAGAGCTCGTG-AAGTCTGAGAC----------------------------AGGATGCACAATGACTTTCTAGGG-----------TACCCTGCCCGTTGGAATACTTGAGGTCTACTTCTGAGTCACAGGCGGCTGCCCT-----------------TCACCAGGTGCTGTCAAGTCTTCCCTGGCTGGCATGATTAATCTGCAGAACAAATGACTTTATGCTTAACCCCACCCCTGAGAACAGCCAACATCcagaaagtaatttcaaacgtactgtctcacaatatgtttttaaaactcagccggggggggggggcaaaaaacaatatttatggaagactacttgaagaaattgtagcttgtacgt---tctagaatccctaagatcttcccctgagttatgaatgaaagagcctgtcagccagtttaccgctcggatacatcacatcgacacccccataaagttgcttttactga-ttgctctttgtcatgatgccatcagcccttattgagggatgtcctacgaaagagccctgagcactttgtcattgtgctgtgcaca-ggaccggtttacagatgctctctgtcataactggcagcagcctctctgcctacgacgatgcagaaattgtattctggtctcagcttctcagat------gctctttgttagagtctgccttctgttcacctctcggtctctgtaaatactgtaactgttggtgttttccCTTCCACGGAACACAGTGGTTAGAACACTTACGGTGGTAGCTGTGTCTCCCCACTAGCTCACAGACAGGACCCCCA------------CAGGTCCTTCCTCCCAGCTCCTTCTCACCTCCCCGCCCTCGTTTCCCCTCCCCCTCGCTT---------------TACTCCTGTTTCCTTGAGTAGGC-------------------ATTGGCTGTTTTGCTTCGCTCCTTATTGTAAAATCC-AGTCGGCAGCTCCTGCCCTTCAAAAGACATTTTAAATCCCAACTCCTCATTTGCAGATGACACGCAATGAGGTAATCATCTCGCTGAGCTCTGCTTGCCTGGGAAGGGCTGCAGTGAGTCTGGGCCTGTGTGGTGAGGGGACG-ACGGGGACCCTCAGAAGGCCACCAAGCTCTAGACAAAGAGCCTTGTTTCCAGGAGCAGCCCTCAGCGCTTGTGCCTCTCCTCACA-TAGGA--GCGGACCAGTCATCCATTTGCAAGGGGTGAGTAaatattaggagtggtttgctttctctaagcacacagtgattgaGGAACTGGACTGGCTTGAGTGTCCAGCCCAATGGGTGCCAAGC--TAGTCCAATCCCACACTC-----CTAACTGCGCAGAATCCGGCCAGTCAGGCCAGTGTGGCGCTGCCAGAACTCCCTTCGATGCTCTCTTTGTCCTCTGCCTAGCTAGTGCCTCTCACGCTCTTCACATGGCCAC--------GTAAAGTTCCAGACCCGAATGT---GGTTGACTCCTATCCTTAGGAAATGATCTCAAGAATCAGCAGTGACGTAACATGGAAAGCAGGGCAGGGAACCCGAG--AGCCAGTGAGGTGTG---------------CCGCTGTGGCCCCACCATGTAAACGGCCCCAGAGGTGTTCTTTGCAGG---------------CTTTGACTCCCTGGTCCCCACTCTTTGCACCAGAGGTTGGCTCACAGTGACAAGAATTCTTCTCTCTCTCCACTCCCCATCCCCTGACCAC-GGCCCCCTCCACCCCCACCCCCACCCCTCCTCAGCATCCTCCTGAGCCCAGCATCCACAAGTTGTCTG----ACCTCCTCCACTATGATGGTAGAAGAGGTTGTGTCCT---------------AGGCCCCTGGCACCATGCCCAACATACACAACAGGGCAAT--AGCTGCTTCGGGTCCAGCTATGAGT---TCTGCTTTTATCATTTTTTTATAGAGTGTTGTTACAACGATGTTCATTTGGGAGAAAAAAAAAATCATCTGAA-CCACGAATGTTgctcaagcccctcgttttagagatgaggc----atatgaggcccagaaaaccgaagcaacttatccgagattacacaacACTTTACAGTAATTGTGGAATAGTTAAACAAGTCCACGAAGTAAGCCAAAGACGGACCAGGGAGCCGGCGGCAGCGGCAGTGAGAATTATTAACACTTCAGATGGAAAGTTTGACCAACTCCATGCTAGATTTTCAAGAGGAAACTGCTTGAAAT-AATGAACTTAGAAGGTTTCTGAGCTCTGATTAAGGAAGTGAGCAATATGAGAGAGGTTTTCCCTCCTATGGGAAGAGAGT--------------CACCTTTC-----ATAAAtatggtggtttgaatgaaaatggac
s HiC_scaffold_1 111132336 2480 - 233722169 ttcccatttttat-cCCCTTTGTAGCTCAAAATTCCCTT-----CAGCTAGTGACTTAGCTATAGAATACATTTTTGCAATTCTGTCTGTCTCGGAGGGTGTAGAAAGAGTGGCATTTTGCATCGTCA----CTTCATTGGTATTTTACTAAATGGATTTTCATCCCCACAGCAGAAGTGATGTTGCCGCACCA---GCCTCAGTATTCTTGTGAGTCTAAAATTACTATGCCACCCACTGACCTCCACCTTAGAGTGCAAGGTTACTTTCTGAGGAGAATCCTAGGTCCTCTGCCCCAGAAAACACAGGAGTTCTGCTG--GAGCGAGGGCTGGCTGTCCTGGAGGGCCCCAGTGTCTTCTCAAGGGCACGTCAAGTCCGCCCCAGCAAGGCTGACTGATGGGCAGAGCAGGTGGTTTTGTGCTTAACC--ACCCGCAAGAACAGCTATCATCTAGATAATGATTTCAAACTTACTgtctttcagtgt-ttttaaaagcttTGCTGAG-----------CAAAACAATATTTATGGAAGATTACTAGAA-AAACTGCAGCTTGTACATCTTTCCAGAAACCCTAAGATCTGACT-GGAGTTATGAATTAAGTGGAACATCAGTGAGCTTAATACCTGGATATATCTCATCAGCACCCC-ATAAAGTTGCTTTTACTGAATTGCACTTTGTCATGATGCCATCAGCCTGTACTGAGGG-TGTCCTAAGAAACAGCCCTGCGTGCTTTGTCATTGTGTTTCCCGTAAGGACAGGTTTATAGATGCTCTTCATTACATCAGGCAGTCGCCTCTCTGCTTAAAACGATGGAAAGATTTTATTCTGGTCTCAGTTTCACAAATAGTTGTGCTTTTCCTTAGTGACTGGTTTCCTTTCACCTTATGGACTCTGTAAATATTGTAACTGGAAATGTGTTCTTTTTCATGGTACACAGTGATTAGAAATCTTATAGCCGAAGCTGTGGCTTCCCTCCAGCACACGAATAGGGCTCACAGCATGAATTTTGCATAACCTCCCATTCACCCCCTCCTTATGTTGCAgccattatttttcctttcctttatttagtttttttttttctcatttccatttcctttaCTGTGTTCATGTGGTTTGACAACAGAGAGACTGGTTTCCTACTCTCCTTACTGTAAAATTCTAGTCCACACCTCCTGCCCTTCAAAAGACATTTTCAATTCTAACTCCTCATTTGCAGATTAAATACAATGAGGTAATAATCACAATGAGCTCTGCTC-CCGGTACAAGGTTGCAATG------------TGAAATGAGGGAGGGTGCTGCAATGCACAGAGG---CCCGAGGTCCTGACAAGGGACCTTGTTTCCAGGAGCAGCAGACAGTAGATGCTCCTCTCCTCACCCTAGGAATGTGCACTCTTCATCCATCTGCACTGGGTGAGCAAATATGAG-AGTGGTTTGCTCTTTCTGAGCGCACAGCAGTTGAGGGGCTGGAGTAGTCTAAGCAT---GTCCAGGGAGAGCTGAACAGTGCTCCATCCCCATGCTGTGCTGCTGTCTGCAGAGAGCAGAACTGGCCCAGCCAACCTTGAGCTGCTCA---TCCCTCCCATGTACTCTGTTGTCTCCCCCTTAGAAATACCTTTCATACT--TCTCGTGGCTACTCTGTTAGGTAAGGTTTC---CCAGAAAGCAAAGTTTGAGACACAGTTTTAAGAA--TGTCTCAGAGAGCAGCGATGAGGTAACA----GAGCAAGTCAGAGAGCAAGAAGAAATCAATAAAGTGTGTTATTGAGGTGATCACTGCTGTGTTCAAGCTGTGTATAATGAGCTTAGTGTTTTCTCTGCAGGGGACAGAAGCTCAGACATTTACTCCCTGATTCTCCTCCTGTACAGCAGAAGTTGGC---------------------------------------CCCGTGAGCATTAACCTCTTCCACCCTC-----------TGGTCTGCACCTGCCTGAGCCCAGGTGCCTAAAGCTGACAAGACCATCTTCTCCACTAGAATGAGAGAAGAGGCTATTTCTCTCAGCTTTGTACATCAGGCATCCAGAACACTGCTGAA--TCCACAGCAGGTCAGCTCAATTGTTTCAGTTCCAATCAAAGGTAATTCTGCTTTTGTCACTTCTGTAT--------GTCA----AAtatt-atttgggg-----aaaaaataatctaaaaccACTGATCTAGCCCCa-ctcctcattttacagataaggctCAGAGATGAGGCTCAGAGAACTTGAGGACGTAGTCCAAGATTACACAGCATATTTAAGTGATTATGGAATAGTAAAAGTATTCTACAAAGTACTTCAACTGCAAGCAAGGGAACTGACTGGAGTTATAATGTGAATTATTAACACTTCAAATGGAGGGTATGACCACCTTTGTGCTAGATTTCCAACAGGAAATTGCTTAAAATAAATTAACCTGGAAAATTTCTGATCTCCGATTAAAGAGGTTGATGTTTCTAGTGAAGCTGTCTCTTCCAGGGGAAAAAAATTCGTTCACTATGAACACATTTCAGTTAATACATGAAGGAGTTTCTATCAGAATGAAC

a score=23247
s chr3           101122021 2817 + 160039680 ATCAAGATAAAATGCTTACCACTTCTCCCTGCACACTAGC--ATTAAAAGCCCAGGGAAATAC---------------------ACAGTGATG-----------GAGTCCTGGGAACTAGTTGTTCCTGCCAAATGAGAGAGGTAGGATTTATTTGAACAGACACACTCATACTAAGTTTGTTTTATTTGCACAGACAAGGCTCAACATTACTCTAGACAAGGGTGACTGGTGCAG----TCTATAATAC-CATGATAC--------AAAAGCACTCA--GGGTGGGAGGCGGATGCCTG-GCTTCATCTGTGTGGCCCATCCCCCAGAGGTTCTCTTCTGGCATTGATCTGAATGGAACCATGATGCCAAGTGATGAGGAGAAACGATAAAGCTCTACCCCATGTCCATACCACACAAAagtggctaagagaacaaaatgttgagtc-tggggccttggagaccatcatctagctctgctagctgg-aaaagccatctaacctcggataccatgcttagctgctctgggcctccgg--caacacacatgtaaagtaggcacacagtaataTATGAGGCAAAGATTTA---GGGGGACAACTGAGGAAGGATAATGTGCA--TAATAGGAGTTTTTGCTTTCTGAGCACTTGGGACATTAAGCATGCACAGTTCCCCCTGGGG----------CCAGCTT--------TCCTGCCAGGAACATAGTTCCCACCCACTAGTAGTGGCTGGATGCAGTTCTTCTTGGCACAGAGTTCAGCAGAAGTTGTACTCTAAGATAGTCAAACTAAGAAACAGTTCTTTGGCTTTGTCACAC--CCTTTCCCCTTGTC-------TACTAGGTGG------AACCAGAGGCCCAAGATGACAACTCCTCAGAGTCGTCCCCCACCCCCACCCCCCGAGAGTCCACATAGAAAATAGATGGCCCTGGTCAATAATGCTGGGA--CTGTCACATGGGGGCTCAAAAGTCTT--------GATGGTGGtgtcttagtcaggatttcctg-tacaaacatcatggccaagaagcaagttggggaggaaagagtttattcagcttgca-cttccacatttctgttcatcac--------caaagga-----agtcaggacaggaactcagggtaggaagctggaggcaggagtggatacagaagccatggaggggtgctgcttactggcttgctcagcttgctttcttatagaacccaggactaccagccctgggatggcaccacccacaatgggccttccgccttggtcactaattgagaaaatgccttacagttggatctcatggaggcatttcctcaagggaggctcctttctctgtgacaactccagctta---tgtcatgttgacacacaaagcagccagcacaGGTGATAAGCAAGTAACTCACA-----GGCTCACTGGTCGCAACCACGACAGTCACCCTGAGTAACACGCCACCCTCGGTTTTCTGAACAGGTTTACTCGTCTCTA------------ttcaagggacattggctccattcccagccc---agggtatgagctccaacttttatatacctaagcactctcaatgtagattt-------taatcctcattttttttgccagtggttggcttaagcatgaacattggagagaatgctggg-----cactgagatctgagatgtctccatgg-aagaattcttaggaaggtcttttgctttCTGTTG--TGTGGCT-------CTTTGGTTTTCC-------------------------------------------TATGTCCGCTGG-----------------------------------------Agttttgtt-------ttgctttgttttgttttcatttg-----ttttgttgttgttttTAACGAGGGGAGGTTCTTCTTTttcattgtt------------aagtatgatacaaa-acaaaatatatctgtgtaaatgtacagtttgatgagttttgacaaatgtagtcttaccac-cactactaaaaggaagagttccccatctttccctgaagtctcctgtgcctgcttattagtcaatatcctctctccagtccctgagagcttgc-------------tttgtatcaccatggatttttgccttttataacatttcatataagttgacttatgtagatataCttatttttattcgagttagggtctcatgtagtctcccaggctaccttgaacttactacatagctcacactgacctagaacctggtgatcttccccatatcccTCTGgaggttcacaaactttgttctgtgtacag---caggctgttccttattagtgctgggcattattccagcctgca----gccataacacacaggttcatccattcactggctgatgtagatttagaacccttctact-ttcagct-tattatgaaccaggatattatgaacgcttatgagcatgtttgtgtgggaacacattctccacatattctctctctctctttctctctctctctctctctcaaaatcctttagaatggaattataggaccatatagtaggtttgcatttacatgtataagaca----------cttccccaagctagctgcttggaatacattgtttagtgttgtcagtggaactatatgaacatttt-agctcttctgcccttgtcaacacttggtattgtcaggtaggtttaaaggactctgtggcagaggg----tggtatctcactgtggctttgatttgcatcccccctgtgactaattatatgtagcaact------------------------tttgctatctagatattttccttggggaaatgtctgttaaaatatttcccac---ttttaattggtcta---ttattaataagttat--gagttcattatatattttgaatagaaaccgtttgtcagggagttggaggg-tagcccagtgatagagtgta--tacctagca---------cacgg--tcaatcctttgtactggaaaaaaaAAAG---------------AGCAGATAC--ATTGTGCAGGTGCTTTCTAGACTTGTGCTTGTGTGGATATCTTGTTTTCTTTACCTTTGCGTACCTGTTACTTTACATTTAAAGCG
s HiC_scaffold_1 111135113 2875 - 233722169 atgaaaaacaaaaacttaacacATCTCACTgcatgttaattaaaaaaaaagacagggaaacaCTTGATACTTAGGGGCTAGGCTACAGAGGTGTCCTGTCATAGGAGTCATGGGAACCAGTCATTCTTGCCAAATGAGA-ATATGGGGTTTATTTGAACAGGCGTACTCATACTAAACTTTTCTTATTTGCCCAGACGTAGGTCAACATTACTCTAGAAAAGA--GGCTGGTGTAGTGTTTCCACAATGCACACGATACTGGGACGAAGAAGCACTGGGCGAGCATGAAACCGACACCTGTTCCTCATCTGTGTGAGCCGTTCTCTAAAGTTTCCTTTTTGATGCTCACTTGAGCCTAATGATGAAGTCAAAC-ATGACAAGATACGATGATGTTTT---CCAT---CATGCGATGGACTAGAGGTTGAGAGAGTTACACATGGAATCATGCAGCATGGGGGG---------AACTCTGCTGCTTAACAAAGGCTATCTGACCCTGGGTAACTTACTTAGCTTTTCTGTACCTCAGGTCCCAGATCCATGAAATAAAGGCA-ATAATAACATATATAGCAAAGAACTATTTGGgagataaatagaaaaaattgCTACAAATCTGACGGGAGCTGTTGGT---TGGTCAGTCAGCACTTAATGTGCCCAGATTGACACCTGATGTAACAGACAATCAGCTTCTTAGTaacttttctaataaaatatctgacacaggcaatttaaaggaggagttggttatt-ttagctcacagttca-tagaggcttcagtccatagttggctggctgcaaggcaa------gg---tggcacatggcagttGTGCATGGCGGGAAAATGCCACGTGGCACGGCAGCcggggtggagagagagagacagatgaggGT------------------ACTGGGAG--------GAAAATGTATGCTTCCAGGCCACagtcccatgatccaatcac-------ctcccaagcCCCACCTACAAGTGCATGAGGATTTAGGGGGGACATCTagctataaaccataacaaccagCTGCCACCGAGGTGAGTATCCCTTTCCTCAATGTGCAGTTTCCA-----CTGGTGATCACTCTCCTGGCAGGGGCTAGCTAGTTTGAGCAGAAACTGCATGTAT--AACTTCCAGGAGGGTCAGGCTCAGGCGTCATTGTGAA--GCTGCTTGCTGCTCTTTTCCCCTG--TGTTATGTGGAAGCAGGGG--------CCTGAAATGACA-GATccataa----------------------aaaagagagaa--------agtaaggGTTCCTGA----TCTgcatggaggaaagctgcttcc-----AACCAGGCATGCCTGCACTGTTCTGCTGCCTTACTGATGTGTGAGTTTCCGTGGT-GTCGAGCAACCCAAATTTGGGTCTTACTTGTTATGACTGCTACAGTTCCCCTTTTTTCTAACTGAGCGTCAGTACT----GCGTTTCTACTCCCTTCTACTGACTGCAAGCTTCAAAGGAGTCTGGCTCCATCCCTAGTCCCTGCAGGTGT---CCCTGATGGCTCTATCTGTGAGCATGCCAATTCTAAACTCATTCGCACAAATTTCATTCCTCCT--CAGGGATTATCTTAAGGGAGTGTAAATAAGGAACTTCTAAGAAGACCAATGAGATTTGAGAAGTTTTTGGGGTAATGATTCTTACAAAGGTCTTCTGTGTCTTATAGGATATGCCTGTTTcagctttctttttccctttttcttttttcttttggtacagggatcaaactcacaaccttgtgtttgctaggcaggtgcttatgccgctgagctaaatccctggcctgtttcAGCTTTCTTAtgattactgttttgctttgtttttatttgaaggttactgtttttgctttc------------ttttgctttttcattttttaagttttattaaggtataatttacatataaaattcatCAATTTATGTGTATAATTTGAT--GTGTTGAAAAATCTAGACCCCTTTCACATTGTGTTAgagaatattt--ccattttctctgtaAGTCTCCTGTGCCTGTGTA-AACTCAGCCCCTTCCCTCCA-CACCTAAGCTCTGGCAATCACTGGTATGATTTTCTCTCCTTATCATCTTACCTTCTCAGCTACTTCACATAAGTTGGCTCATATGGATATAT--------------------------------------GGCTTCTTT--------TGCATA--------------------------------CTATAATGCTCTTGAGATTGGTGTATGTTG--CTGCATATGGGAACAAATCATTCTTTCTTAGTGTGAAGCAGTATTGCATtgttcatatttctattttttatttatttgtccattCACTAGTTGATGCATATTTGGAATTCTTCTAGTCTTAAGCTATATTATAAGTAAGTGTATTATGAATATTCAAAAACAAGTTTTTATGTGGACA--------------------------------TGTCTCCTTCCTTAAAGAATATCCTGAGAGTGAAATTGTTGGACCATGCAGTACATTTATGTCTACATCTATAAGATATTGCTTAACCCTTTTCCAAATTAAC-------aatatcatatata-------------aaatatatgaaagtttTGGGTTACCCTGCCCTTATCA------GACATTTTTA-----GTTTAAG-----CTTTTCTAGTGGGTATATGATacctcattgtgattttgatgtGCAATTTCCTATTAATAAATCATATGgagtatttttatatcattttttcatgcacttatttgtgatttctatatattcttcagtgaaatacctattacaatatttttttttcattttaattgggtTGCCCTCACTGATGAATTACAAAAGTTCATGTTATAGTTTGAATCCAAACAATTTATTAGGGGATAAGAGAGCTAGCTCAGGGGTAGAGAGCATCTGCTTAGCAgggtgaggccctggatttgattcttagttcaacaaacaaacaaataaacaaaaaactttatCAAATACATATTTTGCAGATATTTTT----CTTGCACTTTATTGGATATC----TTTTTTCATCTTTACATa----tgactttatatttaaaatg

a score=16592
s chr3           101130114 810 + 160039680 CCTTCTACCCTTCAATCCCAGAAAGCCAGAGATAGAGATCATTTAAACAAAACCACCTTCAGACCTAAGGGGAAGACA---GGAATACAG--CTTGTAGAAGACCTAGCACTGGACA-----------GGTGGA-CTCAAGTCCA---TCCTCACCTATGCTGTTTGAGGC---AGGGTACATGA--AACCTTGTCAAAAATAAAATAAGTaaaaagaaa---gaaaatgaaggagaa--agaaaggaaaaggagaaaaagaaaagaaaaaagaaACACACACACACACAAACCTATGGTTGAGAACACAAAATGAAGCAGTTATTTTCTGGGGACAGAAGTTGGTATCCTGGATGCTTTTTTTTTTTTTTTTTAACGTCTGTTATTTCGATAAACAGCTTTTAAAAGAATGACATCCTGTGTATCAAATTCTGAATTTTGTCAGGATATCCCTCAGTCTCCCCCCCCCCCCCCCCATTTGTTCCTGGAATCTCTCTCACTCCCTGCCCTACAGGCTGGTAGCATTTTAAACTTCTCCTGAGAACAAAGATGAGAGCCCTCGCCACATTTTAACGGTCTCCAGCTGTGGATCAGCCCTTCCGGCCAGCAGGAGCCTCAGCCACGCCCTCCCTCCCCGAACTTCTGGGCAGC---TGTGTGCCTGGATCTTGGCTGCCGGTTAGTACTACGCCTTGGTCC-CTGGAAAATGTTACCGCCCAGTGCGGCCACTTACAGAAACCATCCCGGGAACCTTTGGCACCAAGATCCAGGCTGGCTCTGTTGTCCAGGTGTTCTGT-GAGAGAAATGCAAC-CTGTACTTACCCCGGGGGTG--GGGAGCTCTGCA
s HiC_scaffold_1 111142966 738 - 233722169 CCTTCTTGCCTCCAGTTGCAGGAAccaaaaaatgatggaaattcaGGCAGAACCTCCTTCAGAAATAAGAAGGAGACACAAGAAATCTAGGCATGACTGAGGgactaaaaagagaaatagagaccATGGGTGTAGCTTAagggcagagtgcttgcctagcatgctcaaggccctggaGTGCATCACCAGCATTGCCAaaacaaggagaagaaaaaagaaaacagaaattaaaatggcATTAGCTAAGAACAAGagcccaggaaaataaaaa-----------------------------------------------cagcgAATTTGCTAGAGGGGAAGTTTGTAT-----ATGCCTTTGTAA---------AAAGTCTGTTAATTCaataaatagcttttaaaaaaa-gacatcctGTGTTTTAAAGTCTGTATTCTGTCTGGGTAATCCTGAATCTCC----------------GGGTTCTTGGAATCTC----ACTCCCTGCCCTCAGGCCTGGTAGCACTTTAAAATGATCCTGAGAACAAAGAAGGGGGCCTTTGCCACATTTTAATGACCTCCAGCTGTGGACCAGCCCTTC-------------CCTTAGCCTCACCCTCAGTGTGCTATGCTTTGGACAGCCTGTGCTTCCCCAGGT-TTGGCTTCCTCTGACTTAGA----TTGGTCTGCAAGAAAATGTTACTG-CCAGTGTCACCATTTGCAGAAAATGTCAC----ACCTTTGGCAGCAGGAGCCTTGCTGGC-----TGTACTGGTGTTGTATGGGGAGAAACATAGCACTGGTTAGGTTGCAGGGGTGCAGGGTCCTCTGCA

a score=15395
s chr3           101133699 1332 + 160039680 cctcccccttcccctccTATACTCAGCCCCTTTCATCTATTTATTGTGTCCCCTATGAACACATTGAGACGGTACCTTAT-----------TGTATATTTATCACATCTTATAAATGCTGGCCTCCCTGATTCCTCCTCTCGCTAGTCCTAGCATGGTAGACTCTGCTCCTACTTCTGATGAGTGACAGGCACACACAAAGCTTGGAGACCCCGTGTG--Ttcacatggaca-----------------ctcactagcagtgcagactctc-ggtctcactctagccctaG------------TTCATTGAGTAGCCAACCAATCAGCATCCACACACCAACAT--GTGAAGGCCTGGATT--CGGCTC-TTTAGGTGGCTGGTGGGTGTGTGGGTGCCAGTGTTTGCTCTCTCGTG----TTTGATAGAATCTGGCCACCCC-ATGAGGAGGCCTGAAGTAGCACCTTCGAAACATCCTCTGTTCCTTCTTCACTCTGGCTGTCGCCCCGGTTTTCCACCAGAAAGGTGGTTGAGCTGGGCTTATGTAA---GTAAAAAATCAGGAAAGCTGACTGGCATAAGGTGAGGATTTCAACCCGCCTGGGTGGGGCCATGGGGCAGTGGCTGCTTCTTTTGATCAGATCTTATT-ACCATAGCCACATTATCGTGG--AAAATCTCTCATGCAGGAGATTCCTGGATTCCAGCTGACAT----CTTCCTTCTGGAGGAAATTCGGGGGTTCCT-----GTGATTCTAAACATT-----AACAAACACCAGCTAAGCCTCTGTCTTAAGTCCTTTTGTCTTTTAATAGCAAGTGAT---GGGCTGGGTGAGTCTGGGGGCAGAGGCTCTGGGTCACCCCTTGTCCAAGGCTACATCAAACAAACAGGAAAGGTtttgtttgtttgtttgcttgtttTAAagacagtctcacctatgcagccttgcttggctggctagaacttgctatgtagaataggctagccttggactcacagatatgcacccacctctgcctcctgagtgctgggactcaaggtgtgtggcaccatgcccagcCTGAT-CTTATTTATT----TATTTATTTGAAATATTTGTTCATCATTTATCTTGTGACTCCAAGAATAAATTGCTTTCCTACTAATAAAACCTCTCTATAGGAGATTTTCCTATTGAATTATTCCCACCGGCCCAAACAGAGTCCGGGTACTGATGACACTCGGCAAGATTCAACCCTCTTTTTAAGTGTTGCTCTCAATGCAG----CTTCCATAATTTCCCAAGCAAGACACTTTCACAATGTGACTATAAAAGGGCTCAAATGCACAGAAGAAGACTGGGTTTATCTAGTTCCAGCGAGCGCTGCACCACCA-----CCCTGATTCTGGTTCCTAGTATACCTAGT
s HiC_scaffold_1 111147536 1166 - 233722169 ccttcccctcttcctcccctccacag----ttctatcaat--attGT-----TTATGAACAC-TTAAAGCATTGTAATATAATCACTGGCATATGAGTTTATATCCTCTTCTAGACTCTGACCTTTCTGATTCACCCAATC-CTTATCTGACTATGG-ATTCTGTGTTCCTGTATCGTATGGAGGACATG---GCATAAGGCTTTGCTGCTCAGTGTGATTTCAGGCCGGCAGAAATAGCCAGCATCGCTTTATTTGCAGTGCAGATTCTTAGGCCCCAACCCAGCCATATCTACTCAAAATCTTCATT----------TTAACTGGATCCCATCTATTGAGATAGGAGAAGCCCTGGGTTGAAGGCTAATTCATGAGGATTGTGAGTGTGTGTTTG--AGTGTGTGTGCTCGCATACACTTTTTAGAGGGTCTGACTGCCCCCAGGAGGAGGCCTTGAATGGTAGTT--------------------------------------------------ACCAGT--GGTAGCTGAACTGGGCTTAtggaaaaagtggaaaa-----aaaatgaactggAATGAAAAGAGAT-----GCCAGTCTTTGAAGGGTAATGAAATGCTTGCTTCTTCCTCGGATCAAATCTTCTTTACCATGGAAGCATCGTCATGGCAAAAATCCTTGCAGTAAAAGATTTCTAAATTCCAGCTGACTGACTACTTCTTTCAAGAAGAATTTCAGTGTTTCATATTCAGTGTTTAAAAGTACTCAGTCAACAAACATTTCTTACCCGTTCACCTTAATTCCTTT-GTTT--------CGAGTGAATAAAGGCTCAGTGAGT--------------TCTGGG--ATCCT-------------------------------GCTCTGATTTGTTT----------TCTAAGGCCAG---------------------------------------------GAATGGGCCAAAATTGTGAGCATA---------------CTGCATGTTAA--------------------------------CAGGTTGATACTTCTTCATTCtgatatattttagaaatgtttgtttAACATCTACTTAGTGACTCCAGgaataaattaattttctatGAGTAAAAATTCTATTTAGAAAGATATTGTATTTAGTT----CCTCTGGCTCAAACAGAGTCTGGGTACTGATAAAACTTGGCAAAATGCTTTCCTCTTTGCTGATATTGTTCTTAATtcaattttctttcatgattgtcTAAGTGGG--GCCATCATGATTTGAATATGAAAGGGAttagatacaaagaaaaagaattggatTACTTGATCTCAGTAGGTA-TGTAGCACTATGTTGCCCCTATTCAAGTTCGAAATGTCTCTAAT

a score=36780
s chr3           101136016 1384 + 160039680 CAGGGTAATGTTAGGGGCTCATTTTTTAGGAGACTGCTGGGGTGAATGTT-TATAAAATGTATGAAACATGTTGTTAGCTACAAGAGAAAGTCAGGCCCTGCTGTTTTAGC-AGCAGAAATGCCAGTTCCCAAGTTCTGATCCTTGAAGAAGCGAGTGTAGGCTAAGAT--GAGAGGCAGCCAGGAATCTAACATTGGAGACTTTACATTTGTGCCAGGAGAACTGAACAACAATGGGAAATACCCAAACCCAGGTCACTGGAGAGACAGCCGGTGTGAAGCCTGACCCTGTGCTGTAAAACAGCCGCTCTGGTCCTTTGGAACATCCGGTATCTCTCCCTATTGTACTGGAACTTGACTTTGGTGTTTGAATCATCTGTG--AGACTG--TGAGTCTGTCAGTGGAGGC-----ACACACTGTTAGAAAAGGAAGGAAGGAGGGCTTTAGAACTGATAGATGGCAT----TGTAAGTGGACACACCTGCCTCCACAGTACCCATGGGCAGAGGCAGACAAAACGTAACCTAAGCGTTCCCTGGCGG--GCATGTGCTGGCCTGTCTAGAAGAGGACTTTCCCAGTCTGTGAGGAAACCCGCTGTTCA------TGGTCATTGCCTCTATGTCAGCGTCTTGGGATTTT-GATAATTGAACAAGCAGCGGACTGGAATGCACAGGTCCTGACCTGCAGCGCTCCAGTGGATTCTGGCCACACAGATCCAGGCAGAG-----------------CCTTCTGTGGGG-------------------TGTCAGCAAGTGCTGTTTGCTTTGCCCTGGTGGATC-TCTCACGGTGGAGACTCCGGGTACTCTCACAGATGAAGTGCCACGTGCTTTCCTTGGAGAGAAATGTCACAGAATGCTGTGCTAAACACGTTTCAGCAAAAA-CACTACAGACAGTCCCCTTGTTCCACACAGAGAACCCTTAGCATC-AAACCAGAAAACACAGGCTTGGCAGAGCTGGCTGGGTTCCTGGAAAGCCACTCGGTGCAGACACCTGGGGTCAGATCACTGGCGTAGAAGGAAGTGTTCCTTGTTTATCTGGGTCAGGGTCAGCTTTG--GGGTCCACCCCCCAGGGTTTTAATGGTTCTGTTTTCAATCAATATTCAGAGCCAGCAGTCAAGGTTCGTTTCAGCTTCAAACCTTTAGGTATCAGACATCAAATATTCACAGGACAAGTAAGAGTTCCAGACATGAAGCTGGGTACCACCCAGCCAACATGG--TCTTCTCCCATCCCTGTGCTCCCTT--------ATCTGA-----TAGTGAGAAACCAAGAGAACAGTATTGTCCTTCACCTCCCTTTTTCTGCTGAAGCACTCCAGGTGAAGGACTTCTCCAAGACAGCCAAAGCTCATGCTACCATGTGCCAAGACTGTAGTTGCTTCTGTTTGGATGCAAATCGTTTAACAACATGTTAC
s HiC_scaffold_1 111151657 1420 - 233722169 CAAGGCAGTAGTAACTGTCTACCCCTCACAAGGTTACTGAGTTTTATTTGATACGAAGTGCTTGAAA-ATGCTTT--GCTATTAGTGAAggtaaagaaattttattttagccaAAAGAAGTGTCAGTTCCCAAGGCCACAGCCTAGAGAAGG--GCTGTAGACTAAAATTAGAAAGATGTTTGGGAACCTGACATTCGAGATTTTACATT-GTGCCAAGATAACTAAGAAACAACAAGAGACAGACAACTTGAGATCATTTGTACAATAACCATGAGAAAACAGTGCCCTAAGTTGTGAAAAACTCA-----GTCCTCCATGACCTC--GTATCTCTCTGTATTGTGCTAAACTTTGATTATA-TGCTTGAATCACCTGCACTAAATTGGATGAGACAGTCATTAGAAGTCCTGTATTTATTGTTGGGAAAA-AAGTTAGGAAGGCTT-AGAAAAGTTGG---GCATAGTCTGTGAGGGGCCACACCTAGTTCCATATTACC--TGGGT-GTGGCAGAGAACATTTAACCTAAGCTGTCTTCCAAAGCCACATGTCCTGTCCTGTCTGGAAGAGGGCTTTGCCAGGCAGGGAGAAAACCCACTCTTCGCTGTGCTGGTTATTGCTATTATGTCATACGCTTGGGATTTTCAATTATAGAACAAGtgacacacagagaaaaacaggTTATAACATGAGGTACTCCAACAGGTTCTGGACACACAAACCAAAGTAGAGGCTTAGGTATCAGAATCCATTCTAAGGGAAATTAAAGTGCCGTGGTTATGTTAGGAATTGCTGTTAGCCTCACTCTGGTGGATCCTATCACAGTGCAAATTTGGGATGTTTTTCCAAAAAATGTGTGATATACTTTCCTTGGAAAAGAATATTAGAGAATACTGTGCTACATACATTTGGACAAAAAGAATTGCAGATA-TTTTCTTGTTCCATACAGAAAACT-TTAGCATTTAAACCAGAAAATGCAGTCTTGGCAGAGACTTTTGGG-TCCTGGAAAGCC-TTCAGTATACACACCTGGGGCCAAATCCTTAGAGTAGCAAAAGGTATGCC-CGCTTCTGCTGGCTGGTGACAGCTGCGTTGTGTCCATTTCCCGGGGTCTGAATGGTTCAGTTGTAAGTCAATCTTC--AGTCAGTCATCACAGTTCCTTTCAGCTCTAAA--TTTATGAGTCTGTCATCAA-----------GCGGTTAAGAATTCAAGGCACAAACCTCAGCACTGTGGAAGAGACATGGTTTCTTCTTTCCATCCTTTGCCCTCCTAAAAGCAGATATGAGAGGCCAGTGAGAAACTTTGAGAAAAACATTCTCATTCATTTAACATCTCCTGCTAAAGCACTGCAAGAGAATTATTTTTCCAGGA-AGCTGAAGCTTACTCCATTAAGCGCCAAGACtatatttgaatctgttttgatggaaatcat---aaaatgtattac

a score=211974
s chr3           101139599 9212 + 160039680 [encoded data, 10303 characters]
s HiC_scaffold_1 111153429 9226 - 233722169 [encoded data, 10303 characters]

a score=38992
s chr3           101150079 1757 + 160039680 tttactttcctcaatctatattatgagaatctttcatgctttgcttggtacatgatactacaaagaccccacttcctgggctcctt-----cctgtcagtcaggtaaggtgatgtaatggaggcatggccactggggtgcttgtagcagtagtaa--------------------------------------------tgtCATCTTTCTGCTGAATGAAATGAGGGCATGAGAG----TTGGGGCTGACACAGTCCTGCTGGGCCATATGATGATT-AGAAAATGTAGGTAGTGCAGATAAGATTTTTAAAAAGTAAGGAAAAAAGT--CTGTGTCACGGACACTGGAGACAACACCACAATCTCTAAGCT-----CCAGGCTTGTCTGGAAGAGAAGAGTCTGCAACTTGCTTACTACACTGGTTCATTTATTTGCTTTTGTGGGGGGTGGGGGTGGGGGGTGGATTGGGTGATGGACCTATGGAGTTAGAGGCAGGAAGAATTCTACCTCATACCCAAAAGCCTAATGTTAA-TACAGG---GGGAAGTTGTTCCTTTTGGATTGCCCCAGTTTCCCCCAAATGAGCCTAT---TTGGGCCCTAAGAACAAA--------------------GACTGAAGTAAACATAATAGCACCGTATCC-TA-GGTGCATTGGATAGAGAAGGGCTCATACCC---------------------------------------CATCGCTGG------TGAGAACCTAGCCCATTCTGTATGAAGACTATGAGGCTTGAGACCTTCAGACCCACA-----------TTCTCTGAGTTTTAGCCA-GaagcctgtctgcaaagcctctcattagatctccgcgtgccagcgtggcttaggaagaatagtccagctggcagagACCCTCCAAAGCTCTGGAAAAATGACTGAATCCTTCCAAACAGTTTTAAAAGTTAGTCCATTTTAAACATTCCATCAA--GTTCAAAGTTTGTTCT-ACCTGGCTGCGTGTAAGTCTATTTTTGCTGTCTAGCTCCTTTCATCTCCCA--CCAATTTGgtgtgtgtgtgtgtgtgtgtgcatgtTGTTTAATTTTACCATCTTCTTTTCTCCAAATTATATTTTATTAATTTGGTGCAGTTGGTAGCCTGCCTCT---GACTCCACACAATTGCTTAATCACGTC---AGCATATTGAATCAAGCATTTTGCTATTCGTTACCTAAACATTACTAGCTCCTTTCCGTTTC-CTCCCTCGTACAATGAAAACACTTGTTTATAAAACCGATCTGAATTTATCAAGGGAAAAGAGCAACATCAAGATGAAGTGCTCTGTTGTTCTTCCCCTGGAGTTATGCCTTGGCTCCATTTTCAACGTGGGGCATAAATTGTAAGCGGTTCTGCCAAGAACACTCCAGTTCTGATCGGCCATATGAGATGAATTT---CTCCAAGCCAG---CTTGTGCAACTTGATGGAGATGAGAAA-TAGATCCAGGCAAGAAGGGAGTGTAT------GCAGGGCTACCATGCTACC----ACTGACTCACAAACCCCTCTCTGGTCCTGGT------CCTCCTCCCACT--CCTGCCCTTATTTCTCTGTCTTCAATTTCTCAGACTCCT---------CCCTTCTTTGC----ACGT-CCCTCCCTTCTTGCCTTCCACATATGCTCACTGAGTGTTTTG-----------------------------------------------------------------------TGCCAATTCTTAGGC--------------------------ATAGTTCCTCCAATGGACTTGGCCATGTTACATGCAGGTACTGCAGACAATGGCCCCATGAAGCCccattttggtcaacagctgacatcctgtgatagccatgtgtttcaggtgacttcagtcactgctgagatttgactccaattacatag-tatccttaaggtagaacttcccagttgatctttctcaacccaagggctcatgagattatggtaa
s HiC_scaffold_1 111163137 1931 - 233722169 tttgtttttacCATTCTATAGTATTAGAATTCTTAATGCTCATCAAGGCACACGTTGCTAGAAAGACA--ACTTTCTGGTCTTCCTGACTCTTTCTCAGTTAGATAAATTCATGCAA----GTTTTGGTCATTTTGCTATAAGTAGTGTAAGCAACTTCTAGCAAGTTTTCTTAAAGAGAGAAgctattttcttacttttttcttctttatttgtaaTAGAAGGGGACTGTAAGGGCTGATTGGAACTAAAGCACTCATTTTGGACCATGAGATGactgatgaaatgaaaattatgcaGATAAggcat---aaaaacaagaaaaaaagaaactgagtccTTGCCATTGTGGATTATTTTACAATCTGTGAACTGCTCATCAGGcttacatgaaaataaataaat-------------------------atttaatcgATTT--------------GTGGGGGG------------------------------GCTTGGCATAGTTTAACCTCACTCTGCCAAGTCTAATCTTAAATGAATGCTTGAGAAGTTGC-ACTTCTGCGTTAACTCAATTTCCCTAAAATGAACAAGTATCTTGGGGGCTGTGGACAAATAGTACTTAGAAAAGCCAGAAAATGAAGTAAAC-CAAGGTCACCTTATCCGTATGATATAGCAGTTAGAAAAGAACTGAAGCTCAAGGAATTTGTGTTCTGCTGTATTATATATCACCATCAGTATCACTAGGGGAAATGAGCGCCCATCCTTTTTTT-------GCTCTGAGGCACTGAAACATCAGAAACCTAAGTTTATTTACTTCTCTGAGCTTTGGCCAAGGTGCTTGCCTGCAAATTC-CTTATTAGATGACCATTTGCCAGGTTGGTTTAGGAAGAAGTGCCCAGCAGGCACCGAAGTCCTGAAGCTCTGGAAAA-TGACTCACCTCTTCCAagctattttaaaagttaatccatttttaatattcctacaactatttaaaattttttcttacctAGTTTGGTATAAATCTATTTTTACTTCCTAGCTCCTGCTATCCCAGAAGTGACTTCAGTGTTTTAATGTGGg----------------aactt----attttatttcttccaaattatatttt-ttaacttgATGCAGTTG-TAGCCTGCTTTTTTTGATTCCACATAATTACTTAATCACTTCCATATAATATCAACTCAAAGACTTCATTATTGGTTACCTGAATATTActagtttccttccatttttctctccTGTACAATGATGACAGTTGTTTACAAAACTGCTTTGAAATTACCAAGTGGAAAGTGCAGCATCCAGATAAAGTGCTGTGTTGTTCTT-CCCTGGAATCATGCCTTGGCTCAAATTTGAACTTGGGGTATAAATTGCAAAAGGCTCTGCCAAGAGTGTTCCTGTTCTGATATG-CACATTGGATGAATTTCTGCTCTAAGACAGGTCATTGTGCAATTTGA-GGAGATGGCAAAGGAGGGTCAGGCAGGAAAGGGATGAATTTTGTCTCAGGGCTATTATGGAACTCAAAAATGGATtccacttcttcctctcttcctcttttttccctcccttccacttccctttctttattttcttctttctaaattttctagttctttcttttctaccaTTCCCTGCCCCAACGTGTCCTGCCTTCCTTCTTCCCACAAACACTCATTAAGTACCATGGTATCTCATTTTTAAAGACAGTGCCACccggccagggatatagctcagtgacacagcacctgtttggcaaatgcaaggtcctgagtttaactCGTGgtaaccacaacaacaaaaagtgcCACCAATGAACTGGG----GTCATATCCAGACCCTGCAGACGATGGCCCAGTGGCGCTC----TTGGCCAAAAGCCGGCATACTGTGCCAGCCATGTCCCTCAGGTGACATCATTCCCAGCTGCCATTTGACTCCATGCACATGGAGATTCCGAAGGAAGCATTGCCCAGCTGATCTTAGTCAATTTACGGcattgtgaaattattttaa

a score=106831
s chr3           101160499 5346 + 160039680 [encoded data, 5763 characters]
s HiC_scaffold_1 111169470 5227 - 233722169 [encoded data, 5763 characters]

a score=17426
s chr3           101168426 1941 + 160039680 AAGTCAGACCCTTTAGGATTGTTATACTTA--AAGGAGACTCCCCTTGGGCGTATAGCTGGG-CTGGAGTACGGTGTGCAGAG----------------ACAGGGTGGGAAGCATGTGG-----------------CATAAG------TGCTAAAGCAGTGACAGAGGGAAGGGGAGGGTTG---------------TTTCTATAGG-ACATCATGACT-ATTAGCAGAGCCTGGGGGACCTCCCTGCAAGGGCAGGTTG---------GGGAGCATGCTACAG-GGATTTCAT---------GCAGATTC-CAGGTAGAGGTTTCTAGGGAGGAGTTGGATACTTGGG-TTGGAGAGTAAGGGAGGTCTTGAGTGACAGCAGCTCAGAGTCAG--------TCCCTGCAGGGAAA--GGGGACACGGTGAGGAGAGTAACA-GGAGAG----GACACTGGA------CAGTCACAGC--------------------TGCACAGGTGGGGGGCCAGCATGCAGGTTAGTCTGTAAGCCCCATGTCCTCATGTG-GAGACTGGAGCTGGTA-CACTGACCTCATAGGATCTCATACTACAGAAAGAACTCAGAATGCCTGGTACAAG--CTAGGACATA----GTAGTAGATGAAAGGTGCCTCTCATTCCAGGAGCTGAGGTCACTGCATAG---------CAGAGGAGAGGAA----AATGTAGCTGGAACACCGGGGAACTTGAGACAGTGACCTCTTGAGACAGATAAGCAAAAAG---CCAACACAGAGACCAAGA--------GGAGCCCGTGAGAATCACAAGACAGACGTGGCCTGGAAACAAAGGGAGGTGATCCCTCCAAGGAGGAGAGGC---CTCTCCTGGTGCACTTGGTGCCTATGTAAAGATTTGGCCaggaggaagaggaggaggaggaagaggaggatgaagaggagagaaagagg-agaaaaaagaggaagtggaggaggagcataggaggaag-gggaaaggaagagagggaggaggggaagaggagaggaagggagaagggacaaaggaggaggggagaaggagaaagaagaaggggaggaAGAGAAGGAGTAGAGAAAACG--TTCAGAGTAAGAGAATGCAACAGCTGAGCACAGTGGAGAGGCTGAACCAGCAGGAACTAAGGTTTGTGGTGGACAC---------------TGAGAGCT------------TGTATGGGGGCGGGGG------------GGGGGGAAGTA----------AAGAAGAAATGTGAGTGTTCTTGAGGGAGTGGAGCTC----------------------------------AGAGGAGGAGCTTGTCCCA----------TGCTTGTGA-GGCCTGGGTTCATTTCTCA----TACTGTAAGTGTGCCAGCCCCCAC-----ACTCCTacacacacacacacacacacacaca---cacacacacacacacagaagcacacacagacacacacacacTAAATGGCATACAAATAGATGGAAGTTGCTTTAACATTACTCATCACCACTACGGGAATCCATATCTTCCCCTTTACATCAATAAAGATGGCAGACACCATTTGGTAACAGTCAGTACTG--AACAAGGCACTGAGACCCGGGGCCACTGCCATGTCCTATGAGTTGGAACATTCATGCCACTTTTATTTTTCCTTGACATAACCAGTTATCACAATGTGTCCAAACTATGAATGCCTGTATCCTTGAGTCAAATTTTACACTTCTAAGAATCTGCCCCGTAGCAACCTCACAAGTGTACAGAGATGTCACTTCTGCCATTCTAATTACGATGAGGGCTAACAAACAAAAGAAAAACCAGA-----AGCAAG-------CTAAATGTTGGCCAGACAACAGTTGTTGAAGTAAAATGTAGTCTGCCCTTACAACTGGGGTGGCGGGGACTGGGAGGAGAAGGGTAGTGGTGGAAA-ATACAA-GTGCCTTGGAA---CAAGGGTGCATGTGTCAGCATTGGATAAGCAGAGGCCGGGGTGAGCAGTCCCTGGCTGTGGTGCAGGCTG---ACAACACGCAGAGACA-GTTCAACACAGCTTTGTTTTGGTTGGACAGGGAGAGAAGCTGATGCTGCGTAACATGACCCTGCTCCTTGGCCAA-TCAATCTTTAATAATTCTTTAACCATCAGGATATATTCGGTGTGATT
s HiC_scaffold_1 111177625 2091 - 233722169 AAGACAAAGCACTTAAGATTATTCTGCTTATTGGGGAAGCTACCTTTGACAGCAGGGTTGGGGATGAACTAGAGTATGCAGAGTCTGATGGCAGAGGAAATAGTGTAGGGAATGTATGATATTCTGGCCAGTAAATCATAAGGTTCTGTGCTGGAG--ATAACAGAGGAAAGGTGGGAGTTGAGATGTGTGAGTAGATGCCCATGGGGATGTAATGAATGATTGATTGAGGCTGAAAGAACTCTCTAGTAGGATAGAGAGAAGGCTCATGGGAGCAAGCTACCTTGAATTTCATAGATAACCTGCAGATAAGCAGGTAGAC-TTTTTATGGAGGAACTGAACACACAGGATTGTTGACTATAGGAGGATCCTAGAGA-AGCAATACAGATTTAGGGTTATCTCACTTGAAGGGCAAATGAGGGCATGACAAGGTGAGTAACACAAAGAGCTTAGACATTAGATGTGATCAACCATGACATTAAATTCTAGCTCTGCCATTTACTGGTGGTACAATCCTAGACGTGTAA---CGTAACCTCGGTGTCCTCATTTGTAAGATTGGGGATGATAATGATAACCTTACAGAGT----TATAATAATAAGCATTCAGAATTCCCAGAAGAATGTCTAGAACATAAGAAGTGATCAGTAAAATGTAGCTATTATT--GGGGGACGAGATCACAGTGGGAGAGTGTGTTCagaggaaaagaagcagaaagaggccACAACCCTGGAGAACA-GAGACATTAGA-----GAGGCAGATAAACAAAAAGAAGTCAATGAAGGGCCAAGGATGTTAAGTGAAATACGTCAGACACAAAagctaaatatcacatgg----------------tttctcttagtATGAgaagctctctctctttctctctctagagGAGTTGTAATG---CgattctgagagagagagagagagagagagagagagagagagcgagagagcgaAATAGAAGAGATAGGAattagggagatctttttcaagtGAGTGGGGAAGGAAGTTGGAAAGAAGGGttagaaagggagggaagggaatggaaaaagG--GAATTAAGAGGGGAAACAATGATGAAAATAAAGGTTTTGCATAGGGAAAGGGGATCAAGAGTTAGAGAAAGCAG--GCTGGG-Gtaatgaaaaa----------caagaattaagatATAGTGTGTACATATGCTAATCCTATCATGAAAAATATGCAATCATTCTGTATGGCCACAGGGACCaaaactcagaagacagaagcatcctggaaacaaaaagaagtg---atattttcaagaaaaagagacTCTGTGCTGCTACCAACACCTacataaagaactggaaaaagaaGATACTTTCAtagaggaagaaatgcaaatggtggCCTGAGGTTGTAATTCAGTAGTAGAGTACTTG-GCTAGGCTCTGGTTTTgactcccagcatcacacacacacaaatatgaatggcaaatatATTGATTAAAAGGTGCTTACTGGCATTTac-cattaaa-gaaatgtaaatcaaaataa--tattagGGCACTACCTTTCACCACTAG------------------------CTTGGTAGAGATGATAAA-----GTTAGTAATATCCAATGCTggcaaaaatgtaaagaaaatttatGCAGTTTCTATGCTCTGTGGGAATGTACATTCATGACA--------TTTCCT--ACAGAGCAACTTGTCATAACATATCCAAATTGTGAAGGCGTATGTGTTTGATCCAGACTTTACATTTCTAAGAATTTTCCC---AACAACCTGTCTAGTGTACAATG----------------TGTAATTATGACATGGTTTAACACagcaaaaaagagcaagagagagagaaagagaggactTTAATGTCCACCAAAAAAGGACTGATGAGATAAAATATAGACCATCCTTACAACT----TGTTGGAAA-----AGGATGGGAGTTGCAATGGAAATAtagaatatgcttttaaaaatcatgactGAAACTA-----AAGGGGTAAACAGAGGCCATGGAAAACATGCACAGTTTGTGATGT-GGCTGGCCACATCATAGAGGGACATAGTcaacaccattttgttttgtt------gggagAGATGCTGATGATATCCAATGTGAACCTTCTTTCTAGCCCCTTCGCTGTTTGCTGATAAGTTAAAAATCAGGAcacatttagttttgtt

a score=9501
s chr3           101170345 605 + 160039680 TCAGGATATATTCGGTGTGATT--GGATATCCTGTAAATGCTGGTCAAAGGGCCGAGTTCTGTGTCAAGTGTGGCATGGAGTTAAA---GAGTCAGCCAAACAGATGGGATGGATGACCAACATCTGGATCACAGATGCTTATGTATACAGAAACATTGCCTCGACGTGTACGAAAAACTCTGTTACTAGGGTAACCTTTAGAGAGTGAGAGAAGAGGGTATGGTCTAGAGGTAGGTTTGGGCTTTTCAGTTCATACTCTATTGGCATTTTTACTTCTTATTCTGTTtttatttatttatttatttatGGAGACCGGGGTGGGGGGGGGGaaggtcttgctgtgtagctcaggaagggcaatcctcctgcttctgccttcctcgtgccgggtgacaggcacgtgcccacacactcgCACATATATTTACTTCTAAAATTACTTTAAAAAATTTCACCATTCAGATGATACACTAGGA-AACTGTGAGGACTCCTCGCCAAGTTGAAAATAGCATCTCAGCTTTGCCCCAGATTTGATATTTGCATCACTGTGA-----GAACCCACCATGATTCTGAAAAACAGGTAT-GAAGACAAGACCCAGGCTACAAAAGGTT
s HiC_scaffold_1 111180417 444 - 233722169 tcaGGACACATTTAGTATGATATAAGGTTTCTTGTCAATGCTGGTTAAGGGGCTGACTATTGTGTCAAGCATGGTATGGGCCCAAAAGAGAGTTAGCCAAAATGATGAGATGGACAGTCAACATCTGGGTCACATATGTTGGTGTGtgcataaa-agaattttaaactaTATGCAAAAATCTGTTACCAGGATTGCCTCTGTGGAATGAG-----------TTATATA-AGATTGGCTTTGAGTTTTCAATTTATACCAT-------------------------------------------------------------------------------------------------------------------CCAACcccatg---------------------------------gtatttttattt-----------ttgaaaaactataACACTCAGATAATCCACTGGAAGAACAGCAATGACGCCTTACCA-GTTGAATGTAGTATTTCAGTTTTGCCCCAGATTTGATAATTGCATGACTGTGACTGTGACAAGTACAATGAATCTTGAAGAAAGGCACAGGGGAAGAGATTGTACTTGCAAAGGatt

a score=12148
s chr3           101178912 825 + 160039680 tgtaggtATTCACAGT-CTGGTAATAGATGCATAATGTATGTATATGGATTTTAAATCCAATGTGGTATTTAAGGTATATATGCTTTATCTGTAGTTCAGATATACGTATATGCTCTCCTTTGACTAAATTTTCAGGAGGGGATCCTTCAGCTAACTGAGACCTATCACCAGGCACAACAACCCACCCTGATTGGCATTAGTACCATGCTCTCTAACCCCTGGACATAAGCACTACTCT----CACCTACCCCATGTCTTGTGTGATCTAACAAACCAAAACATTAAAGCAGAGGGTGAGTCACTTCCATG-ATCCTCAGcagacagacagacagatagatatacatacatacagacagacagacacacacacaCATTTCAGGAAAGTTGAAACCAACATTTACAGTAATTCTGAATTTTTACTAGTCCATTCTACTAAGGAGGTGTGAGATGCCTTTCTCAAACTCCACAGGCTCCTGTTAGAATCCAGGGTC--AGATTTTCCCAGCTTAAGAGCAGAGCCACTGTCCCTCAAGTTGTTCCC-CAGGCAGTCTGGGAGACAGAGCTGGAAATAGGCAGGGCCT-CCTGCCACAGAGAAGCCATTACA----GGGTTATAGTGACACAAACTTCCAGCTCTCTAGAAGGAATGCTCCAG---------------CCTGCATCTTCCATATCAGAAAGGAGCTTCCTTC----------------------CTCTCACTTCTGTCTCCCCAGTGTCCCCTGAATGGGTTCATAGATCTGGTCTGCTGGCTTCAT------------------TATTTTGCTGATGCTGACCATGTCCAGAGATGCTTGACACAGTTACCAGATTCCTTAGACTATTTATTTGCT-TATTTTTTTA
s HiC_scaffold_1 111181051 806 - 233722169 tatatatactCACATTGCAGAAGATAGGTGTTTAATAGATGCCTATTGACTTCAA--------TAATACTAAATGCATACAT--TTTGTCTAGAGTTCAGATATATATGTGTAATCTCATTTGATTCAAAGTCAATAAAATTGCCGCTTAAATAATTGTAACCTGCCACTGTGCATAGCAA---ACCCCTACT----------CTATGCTA--------------ATAAATACTACTCTGTGCTTCCTAACTCAGGTCCTGCGTAATC-------------CATTAAAACAGAGCAATAGT---TCCTATGCATTCCACGCACAATGCTTGGTAGCT---------------------------CATATATGTTAAGTTTAGGACATTTGAGTCCCCCGTTTACTGTAA--CTGAAGTTTTACCGTTTCATTTGGCTCTTGAGGAGTGAGCTGAGTTTCACAAGCTCCAGAAGTTGCTACTGAAATCCAGGAACTGAAATTTTCCATGTTTGAGATT--AGTAATTGTTTGTGAGGCTGCTCCCTCAGGCAGGCTGGCAG-CAGAACTGGAAATGATCACTGCTTGCCTG--GAAGGGAAACTCCTACACTTGTGTTTCAAATGCTGCATACTTTCCTGGCCACAGGAGCGAGTCTCCTGAGCCGGGATTCCAGCCCCATGTCTACCACATCAGCAAAGAGCAACTTTCTGTGCTTCTGCAGTGCTCTCCACTCTCATTTCTGTCTCTCCAGTG-CCATTTAATGGATTTAC-GATCTGGTCAGTTGAGTTAGTATTGTAAGGATTTCTTTCTATTCTGCTTAGATCAACCATGACCATGACGGCTCAGAGGGGCCAccagattaattttaattttagattccTATATTTTATTA

a score=23409
s chr3           101181129 1541 + 160039680 gctaagaaaactagggcacagGTAAAG-----CCAAAAGCTGCTTATGACAAGGACTATTACCATAAGTAAAATAATTACAAATGAGCTC-CTTAATGTGCATATTTAAATCAAAACACATAGCTATA-TTTAGTGTCCCTGTTTGTATTTAAATATACACTGACA------GGTTGCCACCCGTGAATGTTCATTTCAGAGA------------------------------TGGTGTC---------------------------------------TGATGTGAGAGTCTGCATGCGCCCATACTGACGTGCCTGGTTAGCTAGCTGCGCCCAGTCCCCAGAGAG--TTTTTCTTTTGTTAGTAGTTGTGGTTTAGTATCAGCCCTTTCAGCTGTACCAACCAACCCTCCACCCCAGAGAACCAGAAGTCTCTCCTTTGTTTTCCAGTGTCACTCAATGAAAATTCATGATGCCTAGTGACTCAGTGTAA-TAATCTAATAGAGAATCCTAGACAACAGCAGAAAGTACCGCACAGTTTCAAACTCATTTCACCAGCCTAAAA---AGTCATAAAACTTCCCATTAATAACAGCTGTCACAGAGCCCTTGCTCCCATATGCTTCATAGCAGTGCTGTGCACCAGTGACACTGGCCGGCACTCAGATGCACAACAGGGAAAGCAACTTCAACATCATCAGTTAATCCTGATACAGGGGATGGGATGGG--GGATGTGAAGAAGTCCACAGAAGTGGATACAGAGGTT-CTAAGGGCATGCTTTACCCT------ATAGCAGCCTCTAGAAcggtggttctcaaccttcctaatgctgtgactctttaatacagttcctcatgtggtggtggctcccaaccata---gcatt--attttcattgttacttcataactgtaattttgctactgttacgaatcataatgtaaatatctgatatacaagatatttgatatgtgaccc---------------ctgtgacagggtcattcgacccgacccctaca-------------gggatcgcagcctacaggctgggaagcactgCTCAAGAGAGCTGAAATACTGCCCACCTTTGT-------GTAGCTGCCCCCACTGGCAAACTAGGCTAT-CTAGGCTGAGCTAAATTTAGAAGGCACTTCACAGCTTACAATGCCCTTTCTAGGAACGATCAGACCA-------GGTTTTCCCGGTCGCCAA-------------------------------------GACGAGATAAGT---ATCGTCAGTGTC------------------------------------------------------------------ACCCTTCTAAAGCTCAGAAGTTAAGTGAGAAGTCAGACT--TACCTGGATTGTTTTCTACCTCAGCAGCCCGAACGAAggatttagaaatca------aagac------------------------------ttggatttggg-----------------------------------------------------------------------------------------------------------------tctcatt------------------ttatatcccactagctcatggcctctgagccatgggcttactcgttctgaaattatctcctataaaatggagataataagatc--ccccacaggcctgaggtta-----ggattaaattatgtatgaaaagtgctctgtaaactgcactgtactatat-aaTTTGATCATTATCAATATGCAGTTAATACGCTGATGTGG-----CATGCATGGTTTCATTAGGCTTTTTATTCTGGTATTTTCAAGTATATGACAAAGTGCATATGAGTACAGAAAGTGTACACACAGTGAACTCACATGTACCTattgctcagcttcaccgt
s HiC_scaffold_1 111182633 1900 - 233722169 GCTAAGAAAATGGAGACG-AGGTAAAGGGGTTTCCAAATTTACTTATAGctaaaactatta---taaaataactaaTTATGAAAGAGATAACTTAACttgtatatttaaaacaaaatacagagttaTAGTCTAGTGCTCTTATTAATATTTAACCATACACTAACACAATTATATTGCTGTCCTTGCATGTGTGTTTCAGGGAAATGTATGTGACAtgacttttgtttagttttggtatcagcgttcaaactcagggccttgcgctTGTCAAGCAGTCATGACGTGACTTTTTGGATTCTGCCAC-TTGACACAAGTATGTAGATGTATATTTCCAGTCCCCAAAGAGGATTTTGCTTTTGT-AGAATTTATTGTTTAGTATTAGTCGCTTCAACTATATGACTCAAATTTTCCCCTTGGAGAATCAAaagtgtctcatttattttccaATGTTGCTTGATGAAAATTCATGA----------CTTACTGTAAGTAATCTAATAGAAAATTCTGGATAGCAACAGAAAATACCATACAGCTTCATACTCACTTTGCTAGCCTAAAAATGAGACATAAAACTCTCTGTTATAAACAGCTGCTGTGGAACTTTTACTTCCACAGGCTACATAACAG---AGTGCACCAGGGACACTGGCCAGCCTTCGGCGGTGCCACAGGAAGAAC--------CATCGCCATTCA------AGGCAGAGGACAGGAGGAGCCTGAAGTGAGAAGGGCTACAGAAAGGGGTCAAAAGACTGGCAAAAGCGAAGTCTGCCTTGCTTAAACACCAGCCTCCAGGGC-----TTttca--tttgcttctgtttt----------tgtagTACCCCTTGCGGATG-GACTAGTATATGTACATGCACTTAAATTTAGATGGTACTTCACAATTTATGATGTGCT-TTTCCAGAAATGATCAGAACTGCATTTcctaagtaaga-aaaaaatatattgctctcatttctcttttttcttttacagag--attaaaataaaacaaaacaatagaaatgatataggatttcaaa--acaaacggataagaaat--taacaatagtcaccatattgcatatttttgtcttcaaaatacttgctcagatt-acaagatagggaatgcaaaacagatcaaacaatatgagcaa--tcacagttt--------ctttccctgaacTACAAGATCAATAGTACAATTAtcagggttggagatttagctcagtgtcataagcacctgccttgcaagtgtgctgtcatgagtttgatccccagtatcaaaaaaatagTACAATTACCTTAGCTATTGTGTACGTGCATgcgtgtatgtatgcatatatatataatttttctaaggCTCAGATATTAAGTG---ACTTAAAATACCACCTAGCTTTTCTTCCACTTTACCAGGTAGAACATGGGATTTAGAAATCAcatttgaagacaaaaaaaaaaaattaaaaaaaaaaaagcaattgggctggggatttagctccgtggcataagtacctgccttgcaagcaggcggtcgtgagttcgatccccggtaccaataaaaatgaaaaagacaaaaaaaaaattaaaaaaaaaaaaaagaaatcacatttgAACTCAGATCCTACCCTTGTCTCTTCCTGGTTTCTAACCTCTGAGCCATTGATTTAACCTCTCTGAAATTATACCCTGtgaaatgaagataataaaatcTACCTTATAGGTCTGAAGTTAAAATTGTATTAAGTTATGTATGAAAAGTGTTCTG-AAACTGCAATATACTACACGAATCTGTTTATTATTAATATACCGATAAAGTACCACTATggtagaatatattttatttcattaaactttttattattacatgttccAACATATACCAAAATGTGAATGAGTATAGTGAGTACATTTATGCTTAATCCTCATGGATCCATTACTCAGCTTTGCTAT

a score=32586
s chr3           101185632 2173 + 160039680 aattttttttttaatgagttaccttggtcattgtgtctctttatagcaatttaaaa----------------------gtatcaaagaGTAACAACAGAGAGTAACATAAACAAAAGTAAAAACAGAAAACTAATTCAGTCATTGTGTCCAAATGGGA---------TACAAAAAATAATCAGAGCAAGAGAT-------------------------CAGTTATGGGGAACAGCCACTAACTTAGACCACTAAGTCAAAGTGCTCAAGGAAATGA--AACTAAAAGAGGACCTCTATACTCCCAAGGGTTGTGAGA---------TAGACCAGAAGCCATTGGGAAAGTTCACTGATGTACCTCTGACCAGGGATGATCAGTGGAAACCTACCTTCTGGGAGACTGACACAACCTCTCTTGAGGCTGCTCACAGCCATGCCATTGAAGATCACTGAGGGCATGCTATACACTGTTGTTCCTGGGTACCAcaagaactaagaggaaaatacatcacaata-ggaaaaagaaagtcctatcatggc--ccccagtaccttctatttacaaaagcttactgctatgcaatatga-----gagaaatgttcaccaagtccagcaccagagccaccaagatgagtggactgg---gggcctg--------aggcagaatattgatgactagca--caGTGA----CAGATCA--CTGTAAAGGGAAGATGGATGCTTTAT-------------TTTCTAG-----TGGGTAAGTCAGTGCCTAGACG--TTTCCAGAGTTGCTGTAGT---------TGTTATTGTTGTCTTGTAATCATTGTGCAGCCATAAACTAGAGTGTATCTAACG-GTTCAG-CCATTGCAGTTATTATTCAATT-GACTGGCACCACATACACATATATTAGACTGATAGAATACAAGAAGAATGTATGTTTTCT-----TTAATATTTCAGGAAGAGAAGATGGAAAACCACCTCAAAGCCTTTGTGCACAAAGTCCTTCCAGCAGGGGTATCTGTAGTGGGGGAAGGATAAGAGCTTGGCAGTTTCTTTTTCCTTGACTGAAGAGATGCTCTGATAAATGGGGGGAGATCTTGCTCTTGAACATGCCCTGGCTATGCTCTGAGCAGAGGAAGCAGTCTTTGTCATGGAGAGTTAACTGTCAGAGTTTTATAATTGGTGTGTCATGAGGCATACACACGTTAAGG-----AGCGTGTGCTCTAAGGTGACAGAGATTGGAAAGCCCTGATTAAATGAC--AAgcagatttgattttactcataaatagctcaagcagtatttttca-cccccacg-tgttctacaatgtgaccttgcctctctactattagcaggtttggtttgatt-tcttctcctggaat----gctgtctgctggctcaggtgtgtctctgacaatgcagcagaagggtgcaacatggttct--aaggcaggtcacagagggtcttgc---------ctggctcttttggggtgtctgtcccaagggaatctgggtctcgaagtacaaagttcaaacatcttgaactgtctatattaaagtggctgtgtgcgagctgttagcaaacagctcattcagccaacattagctgtcaaacaggtgaattgggcattctggcatagccaatacagttgagtcttcagttcaaggaagctccagctaacatctgactgtaatcacgagagactcaacatgaagacatctcagctatagccttaccaaaaaatttgacccacaagataaagattaaactgctaatatggttgcattaacgggttaactttggggttagtttgtA--TTAGAAATAAAAACTGCTTTA----------AAGACCAAGA--------AAGTTTTTCCTGCAGATGTGATA---AAGCAAGATTGGATGGATGCTGCAGAGATTTAATATTTTTCTAAGCTCTGATCTGGGGATTTCTCAAATCCACGG-----------TCATTCTAG-ATAAGCACCAGGTTCCCTGAAGCACC--TGTCTCATCCGGCATGGCCTGGTACTGTCTCAACGGTCACTCACCAGAGTCTGTAGCTCTGTCACTCATCTGGGTGCTAGCAGAAGGGAACTGGTGTCTTCACTCCTAATGCATGTTGTTGTTTTAATCATCAGAAGATTATATCACTCTTGAAGAGGAGATAGGAGAAACCTGGATTCCAGAGTCCAAAGGCCTGAGTTCAAGTCTCAACACACTCACACCCCAACTCTGTGATATCAATGAATTCAGCAACATAAGCCTCACTTTGCTCTATCTGGGAATGGGAAAAAAATAAATCCTGTCCCATGTAGATGGTAGGAG
s HiC_scaffold_1 111186499 2150 - 233722169 aacatttttctttatacattGTCCAAGTCCAAGTGTTTTACTATaggaatagaaaatgaaataattcagtaAACTTGTGAATCAGCTGGTCTAAgcagaagccaaaaaaaaaaaaaaaaaaaagaaaaaccctgattag------------aataggaaaattttaatacaagaAATTATTAA--CTAGAGGTTTGTAACTACATATTATATGAGTCACAGACATAGGGAACTGCCACTA-TTCCTATAGCTGAATCAGAGCACTCTAGGAAATGACAAACTAGAAAATAATCTCC-CAATCCCATCGATGGAGAGAGTGTGACTGCAGACCCTGGGT-AGTGGAGAAATTCACCGGAGTGTTTAGGCTAAAAGCTGCCAAGCAGGAAACTGTCCGTTAGGAGGCTGACCCAGCTGGATAGGAAGCTGCCCACAGCGCTGCCGCTCCA-ATCCCCCAGGCCGCTCT------------------GTGGTgaaggagcagggagggaagTAAACTGGAGCCCGGAAGAAGAACTCCCTGCTGTGGTGTCTCCAGTACGTCCTACTGACAAAAGCTTAATATTGTACTACTTGATCCTTGGGAAATGCTGATGAGGTCCAGTCCCAGAGACACAACGCAGAGCAAAGCGGTATGGATTTGCAGTGGAGAAGCAGCACATTGAGCATCATCAGACCTTGAAATGCAGTTCAGACAGGAAAGGCAGGACAAATCCTTTGTCCTTACCCTTTGTTTTTCAGCATTCTGCATGAATCAGTACCTTGGTAACCTCCAAAAATTACTATAATGATTTCTCTTGTCATTATTGTTTTGCAATCATTACAAAATCTCGAGTTTTAATGCATTTGAAGTGCTCAATCCATTACAGTTGCTATTCTTTTTGATTGG-------------------------ATCTGACGCATGAAGAACGCACGTTTTCTCTCCTTTAATGTTTAAGGCAGATAGGATGAAAAACTATCTCAAAGCTTTTTCACACAAAATCTTTATAACAGAGATACCTGTAGCACAG--AGGACCAGAGCAGGGGAGTTTCTTTTCCATTAACTCAAGAATTACCC------ATGAAAAAAAA--CTGCTCCTGAATGCATATGAACTCTGAAGTAaggaaaggaag--atttttttcatcTCCTGTAGCTTGTCAGAGTTTCCCAATTGGTGTGTCATGAGCCATAAATGCTGTCATGCTTTCAGTGTGTGTTATAAGATGACAAAGACTGGGAAACACGGGAATAAAGACTAAAGGGGACTTTTCATCTTCCAGAGGTGACCGTAACAATGTTTCTCATCCTCCATGCTCTTTTGCAAAGTGACACTGCCATTCTTCAACCAAGAGATCAAGTCTAATTCCCTTCTCTTGGGATCTAGTCTGTGTGACGATTCATTCTTAACCAACAGAATGCAGTGGAAGTGTGTTACATGCCTTCTGAAGTCAGGTCAGAACTTGTTTTGCAACTGCTGTCTTGTTCTTTTGAGATGCCTGTCCATAGGGAAGCTAGATCCTG------------------------------------------------------------------------TTCAGCTGGGGTCAGCTGCTAATCATGTGA------CATTCTGGCACAAACAATTCAGTTGGGCCTCCAGACCACTCCAAATCCAGCCAACTTCTGACCATAA-CAGGAGAGACCTCAAGTGAGAACAGCGTGGT-----CCTTGCCAAACTTTTGCAC-----AAATCATGAGTAAA---CCAATATGGGTGGTTTAAAGTATTACTTTTTTGGTTAATTTATAACTCAGCAGTAGTAACCAGAATAACACAGATGGAAAATCATGATTATGTATAGATCTTTACATTAGAGATACTATGTAggggagattttaaaaat------aggagcCCATACTTCTCT--GCTCGGATCTAAGGATTCCTTAAATCCATGGCCAAACACTGCTCATTCCGGAATAGGTATCTTATTTCCCAAGTGACCATGGTCCCATTC-------CCTTTTCTGGTCTTGGAGGTC------------TTGGAG-----------GTCTGggtgacagaag-agaaaaccagtGGCTTTTTCTTCAAGGTCTG-TGTTG-TTCAGCCATC---ACATTATATTGTTCCGTACAAG----TGGCGGAAACATAGAAT-CGGAGTCAAATTACCTGAGTTCAAGTTCAGATTAATTTCCTTCCCAGCTATGTAATCTCGAGGAGTTCAAGAACactagcctcagtttcctctatttgtagatgag--aaaaataattcatatctCTTGTATCCATTGGGAG

a score=42927
s chr3           101190244 2238 + 160039680 TCAACTGATGCTCTATGGTGGAGGGTCCCAGGTGTGGACCAGAGACCCATTAGCAGTTCCTCGG--ACCTTTCAGTGGCTCAT----------GCA---------------GCTATCTGCTCCTCAA-AAGAACCTCCGGATTGATTGACCAAGGGCCAAGAAATAG--TCTTTTCCTAGAACACAGATGTAGCCTGCATAGGGATGAAGGAGATGCCCCCCACTCTTCTCTGAAAGTCTGATTCTGCTGAACAAAGCAGGCACTTAGTTAGCAGGAGGAAAAGCATGAAAaataggcactctattaacaggaggctgtgcatgcaaattaccagcagccatatgcacataggaaccatgctggagtccgaaatgagtttc----------------------ctaaaaccccgaaggacaggtcgttaaaaagcttagatgttctctgtgtagaggagaggggagtag-----agctgtgtgca--------cttttagggagcagtgtggtggtttgaatgagaaaatgttcctaattgctc---acatattcaaactcttggtctctgactggtgg------------caccgttagaggaagt-------tatggaacctttaggagatggggccctgccggaagaagtgtcactaggggACAT-----TAATGTAAAATGTGGAGACCAGTCTAATCTTTGGTTCCGT-----TTtcttccctgaataaagagattt-aaggagaaaggccaagacaattgcatttcaagtggaagagcaccctccagtcacataagg-agctgcagagaaacaactccctacatctgaggggcaaacagcagtacatcagcaagatctgcgttctgagacaact-cgaaggccctccggtttattttaattcaaagtggctagcatagataagattcatactgtggagtatGCCTCAG--ATCGACAACAGctgcatttcctagcttctctgtggataggttggctttaggactaagtgacaggttctgggcaaagagtgatgtcattcatccttatacctggcc----------tcctgtaggctagcagccttgctctctccccttctactgtttaagtataataggacact-----tatcccagcccacatccctagggaaaatctgggaacttcctgttgaagatggcagggagagatgctgggtccctggaactctgctaag-----agacaggccttcttataggaacc-cacactgggtagtaaagagacacaaaataaacttgcattgtgtgaaatcactgagccttcagacttgatctgttactcacacaatgagcccacACACTGTGGAGCCCCTGCCCACTTATCTAGAGTTAACTGCTGCTGTCAAATCCAATGCATGGCGAATGTAATCTGACAAATCCTTCATTTGCTTGGCAGCCCTTCAGGTTCTGAGATCAGCTgttattgtgccgtatgacaaccaggcaccaataataaacacttcacaaagatgattgtaaGAGCTTTTGCTTTTCAAAAAAACAACTAATTTCCTCCTCTTTC--TCCCTCCAGTACCTACGCTTGGCATCAGTCAATAATCGCTTCTGACACCACACACATTATCACCCGTTAGCGCATGGTGCGAATAAATGTCTGATGTTCAGAAATGTGGACTTGATGATGCTGGGGCAGTCTA-GACTGGTCATGCTATGACTGtgaagggcagcaggtgtttttcccctcaaagaagttgtgctggcatacag-gtgatttctatccaatatcaaaggagaagaatcagtacaagaatagctctctgtcttcctcctatttgccttaaaaaaaa---tagatttgt----gtttaccgtctcccttctccgccaggaaaggcagaaatgaatggctagagagaacct-----cacccctggacggatccatagagcaaact--------gccac---------------------------------------------------------------------------------------------aactcaccatcatcttctattatggtccccatatatttgctttcccttaacttaatcagagctgcaagcta--agcccttttcc------------------tCCCTACAAAAGTCAC--TTCTTGCTGAGATGCTTGCTGCAACCCTTTGATTATTGGGGTTTGAGTGTGTCTCCCCGCCCCTCCCGGGTTCGTGGGTTGGAAGTTTCATCCCCC---------GTGTGA--GGAGGTGAGGGGGCATTCCTTT------TGGAGCCTAGTACACAGCAATTAGGCCATGTGGGTATGGCTTGC-CAGGGGAATCGTTGTGATTCTCCTGGCA-TCCTGGGGAGTTTTCATGAAAGCATCCTTATAAAAGAACAAGGTTGCCTGCCACTCTCtcttcatagaatggggaaaaaa----------atcctaaaattcacttggaacctcaaaagggcat
s HiC_scaffold_1 111194544 2409 - 233722169 TCGTCTGATATCCTAGGTCAATAGTCTCCAACTATGATCCACAGACCCCT--GGAGTTCCCTAACAGCCTTTCAG-GGCACACATTATTATTCGCAAAGTAATACTGAGATGTTATTTGGTCCCCACCAAGAATCTCCAAATAGGATTGTTAGGGATTAAGAATTAGATTCTTTTTCTCATGCACAGACATAGTCTATGTAGAAGTGAAGGTAGTTTCCCCTCCTC--AACTGAAGACTTGATTCTGCTGAAAAAAATA------CTGATGATAGCAGAAAAGGTACACAAA--------TCTATTAGTAGGA---------------------------ACATGTATATAAGAGGTATACTTGCCTGTGAAATGAACTTCAAATGGTAGTTTATATCAAAATCTGAAATGCAAAGGGCCAGATGGTTAAA--GCATAAATATTCTTTTCACAAAGGAGAGGGAAATGGGTGGCAGGAGTGGCCAGTAAAtgatttttagaaagaaataatggGCTCAAAAGAACAAAGT-------ATAGCCTGGGACAAGTTCG---CTTAAGGCTCTGGGAGGTGTTAGCAAGCTACCCACCACCAACAAAGGTGTTTGAGTATACATAGTCTCACAGACGGCAATATAC-AAAAGAATAGATGATATAGACCATGTATTCAGTATAAAAGGTGGAGACC-TTTTAGTCTTCTTTTCTATGAGTTTGCCTTCCCTGGCTAATGAGATTTTAGGGAGGAAGTCCCAgataattgtatttcttttagaagaaTTTCCTTCAGTCTGATAAGGGAGCTTCAGATATCACTGTCTTTCTACTTagtgagaagaaaagggaaaatcag--AGACTTTGCTTCTAAGGCACCGATGAAGACTTTCCACATTCATTTAACTTGAAATGTTCCGCATGTCAAAGCATCATACTTGGAAATATCTTTCTGTGAGCTCCAATAACAATGTTTCCTAGCTTTCCTGAGGTTAGTGTGATCTC---------TGATAGAGTCCTAGCTGAAA-TGAAGTCTTTCACATTCACATCTTGCCATAAAAATCTTCTCCTGGGTGATCAGCTATGCTCTTTCTTCCTCTGGCTATTAAATTTAATAGCCCCCTACCTCTGACCCAACCCTCATCCCCAGGGCAGCCTTGAGAACTGCTCACTGACAATGGCAGAGGATGGAGCCAGATCCTTGAAACT--GCTTAGGACACAGCCAGCCACCCATACAGGAGTCACACAATGAAtagtaaagaaagaagaaataaactttcattgTATTAAATCACTGAGCCTTCAGAGTTTATCTGTTATGAACACAATGAGCCCACACATGATGAAAACTGAGACCACTTATCTAGAGTTAACTGATGCTGTCAAATCCAAAGCATGGCAAATATAATCTGACAAATCCTTCATTTGCTTGGCAGCCCTTCAGGTTTTGACATCAGCTGTGATTGTGCTGTGTGACAACTAGACATCAATGACAAATATTTCACGAA-ACGGCTCtaatagctttttcttttt-aaaagacaactaATATCCTCTTCTTTTTGTCCCTCCATTATCTGTATTTGGCATCAGTGAACACTTTCT--TGATGTGATACACACTATCATCCTTAAAACTATGGCATTAG-AGGTGCataatttctaaaatgaagagaCTGATCATTATACTGCAGTCTGTAACTGTTTACATTATAGCT-TGAAGGGTAGCA-TTATATGTCACTCCAAAAA----TTGCcactttaaagaattattttgaacTGAAGGCTACTGAGAAGCAACAG--atagaaaaaatttcttttttccccctatttGCCTAAAAGCAGACCTTACATTTGTAAAGATCTCTCCTCTGTCTTCTCTACAAGGAAAGACAGACATTAATTGTTAGAGACAACTTGGAAATACACCCAGAGGAAATTATAGAATACACTTTGATAAAGCTATCCCTTAGACGAGagaataaaagaagcagaatgTATCAGGTATAGGTACAATGaatgttattttatatatataaatgtaccaataaaagaataaaactagcCCTTGTCTGCCATTAGTTTAGCCATAAATTTGCCCTCTCACAATCT-GCCACTCCTAGGACCTCGTAGttctttttcccctctgttttgtcattttccctacACAAGTTACTGTTCTTGCTAAGGCGC-TGCTGT----------------GGGTTGGATATGGTCTGCATGTTTCCTAAGGGTTTATGGATTAGAACCTTGTTTCCCCTGTGTTCCTGTGTGATGGGTGGTACAGGG-----TTTTTAAGAGGTGGAATCTAGTGCAAGGTAATTAGCTCAC-----TGGAActcataaaaaagaattaatgtagCCCTTGTGGGACCCCCAGTTAGTTCTTGTGACAGGATTATGTAAAAAGAGCAAAATTTTC-----CcaactcttcaaagaaataggaaaaaattttaaaaagagcctaCAATCTATGTTTAACCTCAAtagaccat

a score=37709
s chr3           101193788 1391 + 160039680 attcttgacctatccagc--tccaaaaaggtaggttaag---tttattctcttttta-catcatctcacctcagttattttgttatagcgaaggcgaactgactaagatgctatagagg-------tctggattctcctccacatttctcatcgcatgttgctcccacgcggatacgtgttacagatgttaataaacttcagtctgttttcctctagtgcg-tccgtcttttgtcagtttcatttac---agggccccagacaattaacctgagacaggtagagagaaaacagttttcctcccctgcaGCTGGAACATGACTTTAT-------------GCCTGAGTTCTCTCTACATCTACAGggatggcgaagagctcacaaattgtcatctgggacccggctgagagaccaaacaagaaggaaaaaaaaaaatccagcaactgtcttaagctatttggaagactgtcatgttgaagggggattatatt-gtgcttgccctcgaggggcataagcaacaccaactggctggaCGCTCCCTAGGAGAAATGCTCCAGGAGAGAACTGGGGCCAGAGAGGTAACTGC---CGAGAGGAAATAGG--------AAAGAG-----------------------------GGAGGAGAGGAAGAAGAAAGGGACAGACAGAGGTGTCTGTG---------ACGCACACTCAACTTCATTTAAAGGCTAGAAGCAATCCTCTGTCTTGGGTTAACTTGCAGGCAGACTGTTTCATTGTTCTGGAAAAATGATTTTAAAGGCACCCACAAAGAGCC-TTGGCTATGCAAACACAGAACAATGCATCTTTCCTAGAGTGACAGGTTTGATAGCCTGGCGCGCTCAGGAGCTAAACTATATTGCATAATGATGAAAAATGTGTTTCATTCTTTTTGTGGAAAAAGTCGCATCTCTGTGTGAATTGGATTTCTGCTAGGGAAAAAAATGTTTTTGTTTTTGGGTCTTTTTTTTTTTTTTATAA-TGCGTGTGAATTTAGCTGACATGTACTGTGTATATATTGTGACTTGTCTCTGTGGCAGT-TTGATGTGC-----------TCAAAAGAGATTCAGAGGATGGTGGGAGGGCCTGG---------------------CTTCAGAAACAGCTTAGACTATTTACATCCCATTCACTTTCCAGAAATGGGTGACCCAGACTTGGGAAGG--ACTGGTATGGAATTTTTAACTTTTGATGGATTCATTTGGAGGCTCTTGGGAAGTGTTCCCAGAGCCTCATCCAAAGATAGATATGTTTGCTTCAAAGAATAACTGCAGAAAAAAAAAAATACTGGCGTGACCAGTCTTTAACCAGACTGGGGCATGACGGCAATATCGAGCTCCATGGGCATCTTCCAGTCGC------CTGCATCCTTCTCACAGAGATGATCATGGAGGCAATGCATGGTCATCAGTCTCCTGCTTAGCTTAGTTATCTTAATGCCTGTATTCCCTTA
s HiC_scaffold_1 111214232 1438 - 233722169 ATTCTGGACTT---CAACCTTCCAAAACTGAAGGCCAaaaaacctcttttctttgtaaCATTACCCAATCTTGGGCATTTCGTTACAACAGAGGAAAACTAAGTCAAGTGCTCTATAACACCAATCTCTAACCACTCTTCTGAGCTACTCATCATTGAGTAATCCCGTGTAAACTTGTATTACACATGttattaaacttt-ttttatttttctgttgtacaATCTATCTTGCACGAGTTCAGTTTTTGTTAGGGCTTCAGACAACTAATCTGAGACAGATAgagtaaaaatagtttttcttct-tgttttcaggTCTGGACTTCCTTTTCCTGTTGGGAGCCTGAG------ATACATTCACCAAGTTGGAGAAGGGATTCGAAACCACCACGTGGCTGATGGCTGAAGGACTAAGACAGAAAACTCAGAAAAGATGTGGCAACTGCCTTAATCTGTGTGAAAGGCTGTCATGGTGAAGAGAGATCGGATTTATGCTCACCC-CAAGGGACAGAAACAGAACCA-CTCGCTGAAAGCTCCCTGGGAGAAATATTTCAGTA-AGAACAAACTTTAACAGGGCAAATATATTCGAGTGGAAATGCGTCTGTGGCAAAGAGAAGTTATTGTGGATTTAAAGgtgcagaggggaggaggagcagaagaaaGCAGTGAACAGACTTCTGTGTGGAAGTAACAACATA-ATCCAGTTTCAGCTGAAGGTTTTGA--AGTTTTCTGCTTTGGCTTAACATGGAGGC-------TTTATTgttctggaaaaaaga-----aaaacaccaagaagGAACCATTGCTTATACCAATATGGGACAATAACTCTTTTCTAGAATGATAAGCTTGAGAGAATGGCTT--TCAGGAACTAAACCATAA-ACCTAATGATGAAAAacgtgttttatt-tttttgtgggaaAAGCTGCATTTCTATT--AATTGTATTTCTGGTAGCAAACATA-----------------------CTTTTCTTTGGTAAGCACATGTGGATTTAGACCACACATA-------TGCATTATGACTTGTCTTTGTGGAGGGGCTGATGTGCCCTGCAGCTGCTCACAGAAGGCTCTGAGGGTGGTGGGAGGGCCAGGTCAGCTTGCTATTACCCTGAGCTCTAGGAGCAACTTTGACTATTTATGTCCCGTTCACTTTCCAGAAATGAGTGACCCAGACTTGGGGAGAGTACTGGTAtagaatttttaacttttgatggATTCATTCGGAGGTTCTAGGGCAGTGTTCCCAGAGTGTGGTCCAAAGATAGATATATCTACTTCAAAGAGTAACTATAG-----AACAAACATCTGTGCAATCAATTACT-ACCAGACTAGAACATGGATGGGCTTTTTAATACTCAGCATGCCTTCTAATCACATCTAACCACAGCCAATCCCTAGAGGTACCGAAGGGGGTAAC-----TTTGTTAATCTGGTGCTTGTCTTAATAATTTTAACATCTAGGTATCTTTA

a score=26000
s chr3           101200970 2425 + 160039680 ttctaagagtt--attagctgcctccccacaacccttgaatgtatagtctcttattattacttaattctaaatattt--ttctttttccatttttgacattgtcttttactcacagtgatttgggaaacaaattgcttaactctcaagcattgttggggt-------------------------------------------------------------------------------------ggattcttctagctatgtttttatttttgacttgttgctgaagtgtgttgtgcctagagaacagattctgcaagatttcagtccatggaagcttgttgagacttgtcttatggccaaacatatggtcaatctttctaaatatttcatgtggaattaaaagaattgtgtattctgtcgaggtt-ggtgcaatgttctccgtgcattaattggag----tttgcagatactgt-tttccaaacattacaagttctcactattttcttagtcttcctggttttgtttgtttatcagttattgaaatgggttttattaaa-tgttcaactgtctttatgacggtatctatttctattgtactggccagcttttttctttattcatttttgaagctatgtgtagctgcaggcgactttaatttttaatctttataaaggttgtattttgtaactagtattgtcttttcataagtttctttgtgtgtttttactatatcaacatgaactttcttctagtttaatttttgtatagcatatttttattccctttttatcttACTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATACACATATACAGGGCACCCATGCAtatgtatgtgagtgcatgtggaggccctaagttgatgtcagaagtcttggctctctctcttaccttgttcactgaggcagggtctctcagtagagctcagaggttacacacagctgatttcactaggtggcttgctctgggatgccctggctgccccctctgaggccccttacatgagttctggaatttcaaatctggtccccactcctccatagcaagtgtttgttaatcatggggctgtctcctcaaccTGGCCCACTTCTGTTTTTATCCTTTCCCCTTTCTTCAATTTTCTTTAGCCTTAACTTTCAGTGGTTTATTCAAAATAACTTGCTACATCTTTCTAATACTTCATGTTTATAATTGAAGACTGAATCCCTTTACTCT--CATGAAATAGACTGGTGTATTTTTTTTTCCTGTTACATTTTCAATATATTACTAGCTAGGCAATGTATCTGGA--------------------CACCACATGATTTGTTCTCTGTCCTAGAATTCCTAATCTTGGGTAATTTTATAGAAAAACTCATGGGCAAATCTACGGGGGAGGGACGCTGAGAGTGTATGCTACAGTTTTGTAGcaaaacaaaacaaaacaaaaAACTGGGAAGTAACTGAGAGAGCCAAATTGGTTGTTTGTCTTAATGC-TTATCAGAGTGTGGGCATCACA--CCACGATCTCGGGACTGGACGT-CTTCACACTGAGACAGGCAGCAGGAACAGCAGCTATGACAAATAACAGAGTAATCTAATTCTCATGCCCCTAGTAGGCGAAAGCTTTCAGCGAGCCCCAT-GCTATTGACAG----AAAAGGAGCAATTTTATCTCTGCCTGTTGCAATGGTGATGTCTGAACA-TGGTAATGACCTTCATGGACAGAATAACCACATGAAACGGTCAAATGCTCTTTTTCCACAATCAAACCACTAATGGATGCCTGCTAACCCTGGCAGCTCTGTGCCTTTT---------------------------------CCTTGA---CACTCTTC---------------------------------------------------------TGTGCCG---AGTC-----------------------------------------------------------------TTCTGAAGATAGACTCTTTTGCATCTCTTGGGACCAGATGTCTATATTTGATTCCCA-----------ATGTTTGTTCCTAAGTCTTCTCACCTCACCCAGGTCTCCATCACTGGGGAATAAGCAAGTCAAATAAGATAGGTGCAAGACATGGCACACAGCCAACTGTTATAGGAAAGGAGAGAGGGTACCACAACATTCATGGGTATTTTAAAATACAATGTCGCATACAAATGTAA------------------------------------CCTTTGTTGCACTTTTA---------------ACATTGTTACATTGAAATAG--------GACCTTCCAAATTCATTT--------------ATTTCACCCCTACA----------------------------------------------------GCAATTctagataagctttgtgagggtgagaaatttgtctgtatccctggagcgtggaagtatacccggcccacagagggctatcaagaaata--------------ttgaatgaatcctccttttacaaactggaatatagatactgtgcgttaaggaatttacttagaggtacccaatgagtaaaggacagaggtaggactccagtctaCATGCTGGCCATTAAGCATACTGTCCCCGAGGCTGGTATAGCACTGCATCATTTGTGTCTATTAGAAACGTATAAATGGGATAGAGCCCCGCTGTTTTTCTATAATAATGTGTGTCCTAGAACAAAGGTAATACACGTTTGACTGAGTGTTTATTCAGCAGAAGGGAGAG
s HiC_scaffold_1 111220867 2414 - 233722169 TTCTAAAAATTCTGTTAGTTGCACCCC---AAATTTGTgatatatagtatttt--tattatttaattctaaatgtttgataatttttccattat--aatttctcttttaaatataaGATATTTATACTCAAATTCCTTAATTTTCAACTA--GTTGAAGTTTTTTTTGTAccgtggatcaaactcacaacctcatacttgccaggcaggtgcttataccactgagctaaatccccagcccatgaagTATTTTTCTAACTATATTTTTACT---GAATT-TAACTAAATTGCATTGTAGCTAGAGAACACATTTTACAAGATTTCAGTGCTCTGAAACTTG---AGACTTGTCTTACGGCTAAATGTATGGTCaatttttctaagtatttcttACATTATTAAAAA-----TGCGTTCTGCAGATGTTAGGTGCAATGTTCTATGAACATTAATTAGAACAATTTTGCTGAAACTGTActtccatatattttaaaatctttctgtttt-ttagcctgcttgtttta-------tataaataaatgagacaaggtCTATTAAAATATTCAACTACCATTGgga---------------------------gtttttttcttgttttatatttg-------------------------cTAGTTATTG--CTTTATA-------CATTTTGAGGCTACAACTGT----GCATAAACCCC-----AAATTTTT----TATCATTATACATTTTGT---AGCTtattatatatata----cttttcCCTTCAGTTTTATATAACCTTAGTTAAGTG---------------------------------------------ATATATCCCAAAAACTTTAGTAAA------------------------CCAATccgata---------------attttttttaattt------------aaacttttttgaaaaa-----------aaacagtGCTGGt--catcaaa--------------------------------cccagggcctttgcatg------------------ctag----------------gcaaacattttt--gtcactgagctacattcccaccc-------cTTATCTTTTTAT-----------------------------------------TGG---------------------------------ACTACATGCTT------------------CATTTACTTTTACATAGTATGTTCTGATATGTTTGTG----CTGCTACTTTTTCAAATTAATACTAGACAGctaatatatttggaaaatatgtAAGTTATGTACTTACCATATCATTCATTCTGTGCTCCAGAATTCCTGTCCT--GACAGTTCTACTGAGAACCTCGCCA-CAGGTCGATGAGGAGGC----TTCAGAATGTGTATCACAGTATCACTGTACTGGGGCACAAATC----------GAGGCAACTGTGGAAGCCACAT-GGTTTTCTGTCCTGTTGCATTAT--GAATGGGTACATTACATCCCACAGTCTCAGGACAGGACATTCTGGATGCTGagacaaacagcaataaca------atGATGGATGGTGGTGCTATCTCATTCTGTTCCCTCAAATAAATGAAAGCTTTAGTTATACCCCTTAGGTGCCTGCAGGACTAAGAAATACAATTCTATCCCTGCCTTTTGCAGTGCTGATGTCTGAAGACTGGTAAGGATATTCATGGACAGGTTGATCACGTGAAAAGAACAAATCATCTTTTTGCACCATAAGCAGGCAGATGAAAGTTTCGTAACATCGAtgactttctgtctttttgagatggggtctcactatgcagttcaggctggccttgagctcactttgtagctcaggctggtcttgaacttgcaaccatcaGCCcctcagagctgggattacagagtgtGCCACAAAGCCCAGCTCATTGGtgactttctgtattttctttaaacatatgTTGTGTTTATTATTTAACATATCAATTCTAAAGACTGATTCCTTTGCATCTTTT---------TGCCTGTACTTTTTTCCCCTGCCTTTTATTATAAATACTCTTGTGTCTTTTCACACAACCCAGGTTTCTATCACTAGGAAATAAGCAGATGAAACATGGTGGATGCAAACTATGGAACATTACCAGCCACTAGTGGGAAGgggagg------------atatatatatatatgaaaatataatgtttaataaaaaagtaaaaattaatcgaaaacaaaatactaatagatttttctaatttatttcactcttACAGCaattttttcagacagggtctcatt-acatagttcaggctggcctt--gaactcactttgtagcctaggctggcctcaagcttgcagtgatcctcctggctcagcctctcgagggctgggattacagtatgtATCTCTGCAATTATAGATAAGCTTTGTGAGGGCAGAGTTTTTGTCTGTGTCACCAGTGCATGGAGCAGTGCCATGCACATAGAAAGCTCCTAACAAGTATTTGTGTATGTTTGTTGAATGAGTCCTTGTTTTACACA-TATAGAATGGAAACTGTCTCTCAAACACCATATTTAAAGTCA-AGAGTGGGTAATGCGCAAAGCTGGGGCTCCAATCTATACTCTGCTCACT--GCACACTGTCTCTGAGGCTGGTATAACATGCTACCATTTGTGTATGTTAGAAACACACAGatataata------cattattttccAACAATAATGCATAGTCAGGAATGTAGGCAAAATACGTTTGCATGGGTGTCTGTGTGGTAGGAAGGTAAG

a score=37447
s chr3           101211596 1811 + 160039680 CAGATGAAGAGCTGGGT-TATGGGGGTACCTGGGTGTGGGGGACCCAAGCATG-AAGGCATCTGAGCATATGAATAAAACCTAGAGTGCATTAGAACCTGGGTCTGTGAGGACCTGGATATGTAAGCACTTCACTATGGGAAGACCTGAGTGTAAGGG------CACGAGGTGGGCACCATAGTGCGTGAGCACCTGTGGCGGGGGAGGAGCAT-CATGGGAGCACCAGGCCATGTAATAGCA-GGATGTGTTGGGCCTCAGCTTTGAGGGGCTCCAGCCTGTGAGGACTTGGGCACATTAAAAGCTGAGCATGTCAAGACCTTGGTATTTGTAAGGACTTGGGCACTGAGTACTAGGTTATGGGAGGATGTCTGCGAGTGAGGACCCCCAGGATATAGGCTCTAAACCTGCTTGCTACCTGTGGCTTAGCACTCCTGCCCACCCATGG------GTGAAGGATCTGAACAGAATGGCTGACAGAAAGACTCTGTAATGAGAGGGCAGGCCCAGGGCCAAGAAGCTGTGTCTGCCTCCCACCATAAACCATCACACAGCACTTTGAACGAAGTTTATGGCTTTGGCAGAGCTCCAATCTCCTGAGGGCTCAGGCTGTAAATTCTTAAGAAGATCCTAGACCCTGCTGGCC-GGGCCTTGTCACCCATTGTGAAAGGTGCAGAAGAAAAGGATAGGTCACATTGTAGGAGCTTcccccaccccaccaccaccaccacccccacccccCGCCTTCCACCCCACACAGGTCTATCGAGAAGGAAGACAAACTGTGTAACATGGATGGAGAACTAGGCC-CCCCGGGGTGGC-TGGGGGACCTGTGACAAACTGCTAAGTGAGAACATACACAGGAAAGAGGCAGGA--AAGGCCCTAATCCACAGAGCA-CCAGGGGAGGCCAGGTCTGTGTTTAGCCTTGGCTGGTGGGGCCTCTCCTGCCTCCCCTCCTACTCTTGGCTGATTCACTCAGCAGCTGGGCTCCAGGCGCCCGGGGCAGGGCGGGTGGAGTGAAGGGTACCTTCCTGGCCCCTCCACCAGCTCCATCTGTGCACAGGCGC-CCCTGTGGTCCCCATACCCAGCTG-TCCACCACACTGCTAGTGGGTGTGAGGCCGTTTGGGAAAATATCCGCTAAAAGCAGAGTGGAGAGAAAGGGAAACA--GAATATTAACGTAGCAGGGAGAA----------------------GTCTGCATAAATCTGAATGGCTAATGAAGTCAGGGAAGAAGCCCAGAGAAGCCCAGGGGTCTCTAGACCTCAGACCACCAGAAACTGTGAACTTGAGGCCAGGGCTACATGGCCAGCTAGTGATGCTGTCATTTTGCAGTCAGGGGGACTGGGCCAGAGTGTGTGTGTGTGTGTGGGGGGGGGGGTAATGGGGGCAGCCCGGGCTCCAGTGAGAGGTAGTGAGGTCATTTCTGGCCAATCAGAGTGAAGGGCAGAATCCCAGCTGATGATGGGGATTTTAAAGGA-CTACGGGGACTTCCTAGTGCCACGTTTCTGTCTCTGGATTGAGAGAACCA--------------------TGGAGCTGGCCAGC-----CGGCTGGAGGCCAATGTCTCTTGATTTTTCTTT-------GTGCTGTGTTTGGAAGGGTGTCCCCAGG-GAGGCTGACAGCCGCCTCTGAGAAGCAGCTTTCTGTCCCTACAGGCCTCTTTCCATCCCATCCTCAAAAGCAAGGC--------CTCTTCCCTTAGCAGGTGTCCCTCTTTGCTCAACCCTGTTTTCTCCTCACAAAATGCTGACTCACAGGTGGACGGAAGTCGTC---ATCCCTTAAGAACGCTATC-------TCCTTGACAGGTGGCCGCCAGCCAGCTCCAGCATTAGTACTTCTG
s HiC_scaffold_1 111229138 1716 - 233722169 CAGATAAGAACCTAGATGTATGAGGAT--CTGGGTGTGCAGAATCTGACTATTCGAGGCCCCCAGACATATGAA--------------------AACCTGGGTGTGTGAGCACTTAGATGTGTGAGAATCC---------AGTACCTGAGTGTGTGAGGATCTCCAGGAGTTG--------AGTGTGCAAGGACCTG----GGTATGTGAGCATGTGAGTGAGTATCC--CTATGCAAAAGTGTGGATGTG---------------AAAAGACTTGTGAATGTGGAGA-TTGAGTATATAAAAGCTTAGGTGTGTAA---------TATCGATGATGACAAGGGTGTGTAAAACACTGATGCATGAGGATGCC---------GGGTCCC--------AGCATCCAGATCTGCTCACTGTTTGTC-CACCCCACTCACGCACCCACCTGACTGCCTGTGAGAGGGCCGACCAGAGCAGTGGATGGGGCAGCTCTGTATTGACTGGGCAGGCCCATGGCCAGGAAGTCGCGTCTGCCCTTCACTATAAACTATCA----GCACTTTGAACAAAGTTTATGGTCTTGGCTGAGTTCCAGCCTTCTGAGGTCTCAGCTTGTAAATTATTTCAAAGCTCGTAGATCCTGCCAGCCAGGGCTTGGCCACCCTCAGAGGTGGGTGAAG-AGGGGAGGACAGGTCATACTGTggg-----------------------ctccttcctcctcctcttctttatgTCTGTCAGAATCTCATTAAGATG---AACACCCTGTGCCACTTCAGTGGTGAAAGAACCCATCATGCAGTAGCGTGGCTCACTTGT--------------TAAGATGGTAGAAatg-gagagacaggaagagggcTCTAACCCAAAGGACAGTCACAGGAGGCCTGGTCTGTTTTTAGCTTGGGTTGGTGGAACTGCTTACTCTTCCCCTCCTACTCTAGCCAAATC--CTCAGCAGCTGGGCTCTGGGTTT------------------------GGGTGTTTTTCTGCCCCCTCCACCAGGTCCATCTGTCCGCTGGAGTGTCCTGTGGTCTCCACACCCAGCTGTTCCACCACACTGAGAGTGGGTCTGAGGCGGTTTGGATTAAGAGGTGGTAAAAGCAgggtggggagaaaggaaaacattgcATATTAACACAGCAGGGAAGATGATAAAGGACTAAAAGAACGCTGCTGCATAAATCTGCATGGCTAATGATGTCAGGAAAGAGGCAACAGAAAGCCCCAGGATGGC-AGGTCAAGGACGATGGGGAGCTATGAACTTGAGGGCAGGAAAACACAGCCAGGGAAAGA--CTGTCATTTTGGAGTCAGAGGAACTGGGAAAG-------GAGTAAAGCTGGTGCAGAGGGCAGATGGGAAGGTCTAAG--CAAGTGAGCGG--ATGAGGTCATTTTCAGCCAATCAAAGTGGAGGGTGGAATTTGAACCATGGAAAGAGAATATATACGACCCCCAGGGAATCAAGAGTGCCATATTCTTGTCCCTGGATTGAGATGActgcagaaaacagaaagactcTTTGGAGCTTCTCTGTGTTCACATTTGTATTTCAGACTTTTTTGTGTTGTCTCCAGCCTGGGGGCAGTGCTTGGCAGAATGACCCGTGGCCCAGCAGACAGTCCTCCCTGGACATGGCCTCTCTCTCCCTGAATGACACGCAC-------------AAGGAGAGGTTCCTGGCGCCCCTCCCTCAGCA-GTGT-CTTCTTCCCTC-ACCCTGTTTCCATTTCACAAAATGCTGACTCCCAGGC--ACAGCACACTTCCGAGATGCATAAAGATTCCATCTTTCACATCTCTGACAGATG---GCCATCCAGCTTCAACTTGAGCACTTCTG

a score=8897
s chr3           101219365 1230 + 160039680 CAGTGCAGCACCCCAAGTTTTTTCTGTGAAACTGCCCTGCTGTTCTCATCTGTCTCTCCACCGTCTCCCTGAA---ATCTGTGCCTGGAGACCCGAGTAACATTTACTTGAGAACaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-gcaaaaaGAGTGCTTTCAAAGTCAAGCCCCCAAGCGCTTCACGGCTAATCATGTGCCAAGTCAC------GTGGCTAGGACAATGACAGG------CAGGGTCGCTGTCCACAAGACCTTTCAATTAGGTAGA-CTTCTCTCATGTTTA------------CACCCTTAATGGAGCTATGAATTATCTTTGTTTACT-AGGATTAAGACATGATCTCATCTCAGTGATTTAGAATAGCAATTGTCAA-TATGGGTCTACTCCCACTGATGTCTTAGTATAAAACCCTAAG-ATAACCAAATTCAGGCCAAGGGCTG--------TAAGTGAAGCAAGATGCCCAG----CATGTGTGGAAATA-CTTTATTATTTCC----ACCCAGGCTTATGTTCTGTGGGTGCTCCCTAGAACTGACAGTGCCCTCACGCCCAAAGAAGTCTCTTAAAAACACCCCAGCCCTCAGGTTTTGTGTTTTCACTTTTGAAAGATATAAGG-CACAAGTCTTGATGAAATTGTGAGTTTAGACACAACTTTGTGATTTTTCTTAAAGAtttattttaattatgtgtatatatgtatgtgtttatgcacatcagtgcagtacccacaaaggccagaagagggcatcagatccccactggagccacaggttcaggtggttgtgacctgcctgactcaggtgttgggaactgaactcagatcctctgtaagagttgtgtctagtcataactgctgagccatctctccaactccATAGACACAAACCTGAATGAGCAGGGATCTGTACAATCATGTGACGTCCTCCTATCACGTGATAAACCAGAAACTTGCCAAGCTTTCTCTCTGCTGAACCAATTCTTAGACCGAGAAGTTGTCCTGGGTCTTCATCGGCCATTACCAGCTTTTGTTCTTGTCTGAGAGGGTAGGCAGAGCTCTTAGCCCCGTGACTCTTCAAAAGGACTTCCCAAGACATGGCTCAGTCAGTGGAGATAATAGC---------CACGGGAATGCATTGCACTTCCCAAGTCTGGACCCTGCAGCAGATATGCAGGAAGGCAGGGATGAATGTCTGCAGCCAATACTTGATTGCCAGG--------------CGTGGTCCTAAGGGAGGCATA------GCTGCAGTCAGTCCCT
s HiC_scaffold_1 111236436  981 - 233722169 CAGGGCAATGTCTCTCAGTCTTTCTGGAAGATTGTCTTGCTGCTGTCTTCTGTTCCTTTATGGTTTCCTCCACTGTCTATATGCCCGGAGATCTTAGTAGCA---GCTTATGAACCAGGTAACAGAGAGTAGGTCAAGGATGAAATGCA--------------------------CTGAGTGCTTGAGTTCTTATCATGTACCAGGCCACAGGCCAGCAGCCATGAGGATAGAAAAACATAATAATGTCACTGTCTACCTTGTCTTTTGATCAAAGAGTTCTGCTCTTCCATTTGAAAATGGCAAGCCATCTTAAATGTGACTGAGC-TTACATTTCTTTAGTCAGAGTTAAGAAGTGAGTTCCTAACAGTGGATTGGAATTATGATTGCAAAATATTGGTTAAATCCCATTCATTTCAGAGTCTAATA---GAAGCATAACTACCTGCAGGCCCATTGCCGCTCGGTTCTAAATGAAGCACGGTGCCCAGTGGGCACATGCTGGACTATCTTCATCATTCCCTCTAACTCAGCCTC---TGCCAGGTACACTCCCTCG--------------------CTGAGGAAGCCTCTTACAAACACTCCATCCCTCAAgatttgggttttcatttttaagagagaaaaagatacaaGACTTAATGAAATTGTAAGTTTAGACCCAACTT-------------------------------------------------------------------------------------GAAAAGCATCAG----------------------------------------------------------------------------------------------------------------------------------------------------GAT------------------TCCCTCTATTATTAGATAAAGCTGAAACTTATGAAGTCTTTTCTATGCTG------CTCATGGCCTGCAATGTGGAAGTACTCCTTGAGCACCTATT--TGGGGTTTATAGTTTTCTATGAGACCAGACAGAGGCGTCTGCCTTGGAAATTCTTCACAAGAATTCACAAAGCATGACTCAGTCAGTGGAGATGATAGCAACATTAGTAACAAGAATGTTCTGCCCCTCCTGGGGCCAGACATT-TGTCAGACCTG--GGAATGTGAGAAG----------AGCCAACGTGTGATCGCCAGGCACACTGCTTTATTCACAGTCTTAAACATGCCACACTGCTTCCTGCAGTCGGTCCTT

a score=28846
s chr3           101233487 612 + 160039680 ATGGTCATTAGAACAGAGGGTGCCATTGATGACTCA-CTCATTGATGGAAATGCTTCCGCCAAAGGCCCGGAGGGTGAAGGTACCCAAAGCACTGTTGTCACCAGTGTTGACATTGTCATGAGCCATCATCACTTATAAGAAACCAGCTTCACAAAAGAGGCCCATAAAAAGTACATCAAAGACTACATGAAATCACTCAAAGGCAAACTTCAAGAACAGGAACCGGAAAGAGTCGAGCTTTTTATGACTGGAGCTGTGGAGCAAATTAAGCACATTCAGGCTAATTTCAGTAGCTATCAGTTTTTTATTAGTGAAAGCATGAATCCATATGGTATGGTTGTTCTCCTGGACTACCGTGGAGATGGTGTGACTCCATTCATGATTTTCTTTAAAGATGGCTTAGAGATGGAAAAATGTTAACAA------------ATTGGATCTATCGCTGTCACCGTAATTGGCTGCTGCTTACCATCCATACAACACCAGGACTTAGGACAAATGGGACTGATGTCATCTTGA--GCT---TTTATTTTGACCATGATTTATTTGGAGCGGAGGCATTGTTTTTTAAGGGAAAAAAA---ATGTCATGTGGGTTGTCTAAAAAAAAAATGCATTCAAATT
s HiC_scaffold_1 123040017 618 - 233722169 ATGGTCAGT-GAACAGAGAGTAACACTCATGACTCAGCTCATTGGTGGAAATGCCTCTGCTGAAGGCCCTGAGAGCAAAGGCACTGAAAGCCCAGTAGTCACTGGTGTTGATTTTGTCATGAACTGTCA---CTTGCAGGAAACCAGCTTCACAAAAGAGGCCTATAAATAGTACATCAAAGATTATATGAAGTCAATCAAAGGCAAACTTGAAGAACGAAGACCAGAAATAGTAAAACCATTTATAACACAGACTGCAGAGCAAATCAAGCACATCTTTGCTCATTTCAG--ACTATAACTTCTTTATTGGTTTAAACATGAATCCAAACAGCATAGCTGATGTGCTGACCTACTGTGAGGATGGTGTGACCTCATTTATGA----CTTTAAGAATGCTTTAGAAATGGAATAATATCCGTGATTCGGTGGTTACCTTGAATCTACCAC--TTGTCATAATTGGCTGCTGCTTCTCACCCAAGCAAGGCCAGGATTTTAGGC-AGTTGAACT-ATTTCATCTTGAAGGCTTTGTTTATTTCGAAAGTTATTTGTTTGGAGTGGAggcattatttttttaaggaaaaaaatgcatGTCATGTAGGTTGCCt-agaataaaatgcatttaaatt

a score=53507
s chr3           101236673 1149 + 160039680 TCAGCCATTGGAAGTGTCCTCTTCTGTTACAAAATCAGTCTTTCCCACTTGTATCTGCCCAGTCCCAGTATGCAGGGACAGGCGAAAG-GTGAGGCTGGTGACTGTATTGCATGCAGTCACCCTCTGCACTTAGAACTCGAAAGGAAACAGGACAGTATTTAAATATCGCAGTCCA-AATGTCC---AGCGTCCCAGGCTTGTAATAATGGAGACACTGTCA-TCACACAAACGTCCAAAAGAAATGCTGAGTGGAGAGATTGGTTAGAGTGTTCTCAGAAATCTTGGGGTTTACTTCCTCCTAGAAGTCAGGAACAGGATGCTGTGGACTGTCAATGGGTCATTAACTTGACATTCATTGGCCCTTTTGTTGACAGAATTGAGGGGG---GTGGGCTTATTCTCCTGCCTACCACTAAGATTCATTCTAGGGAAGGCGTAAAATGCAGGGCAGCTGCTTAGAAACCATGGGCAGCGCAGTCCCGAGCCCTGCATTTACCAGCATGGAACAGGGAAGGTGATCCACAACTGTGGGCCCAATAGGCCCTCAAGAGGTTTGAATTGACCCTCAGTCCTGGCGTCTGGAAATCCATCATTCCACATAGACACAGACACCCGAGCTGAATGAGTAATTAGTATGGTTTAGAAAATTCAATTCAACAAGCAGTTATTGAGTGCACTGTGAGCACACAGTGTTCAGGACCAGGTGCTGGCGGAGGGAGGAAACAAGGGTGGGAGAGACTATGCAGTCATCTACGAAATGCTGCTCATTCCCAGAAGTGCTCAGGCCTGGCAGCGAGACAAAGCCTACGTAGGAAATAATGAGAAAATACGAGAGACAGTGTCTGATATTTAAAACCATAGGCTGAATGTAAATCAGACCTGTGGCCTCAGCACGGGCGATGGATCAGATGGGG--TGGCAAGG----AGCCTGTCGGTGAATGATTAACGGGTCCAGGGGGAGCTGAGGAGCCTGCATT---GGAACACGATGAGG---AAGCACAGACTGGAGGTCCTGATGGGGGTCCCAGGGGAGGGGGAGCCAGGCATGGTAAAAGTGTACTCT-----TATTTTGACAAGGAAGATTTTAGTAGATCTTCCTA-GAACtgtgtgt---------------------------------------------gaggatgtatgtgtgcataggtgtaagtctgtgcgtatgtgtAATTTTAAGG
s HiC_scaffold_1 111249568 1195 - 233722169 TCAGCAGCTTGACATGCCTTCTTCTGTTATGTAACAACTTTTTCTTGTTTGTACCTGCACAGCCATATCATG--AGAACAGGCAAAAATGTGAAGCCCATGGCATGGTTCTCTCCACTCATTCTCTGCACTAAGAGCTAGAAATAAACTACGACAGTATTTAAATATCACACTTGAGAATATCTTTGCATATCTCAG---TGTAATAATGGAGACATTGTCACTCTTACAGACATCGGAGAGAAATGTTCA-TGGAGAAATTGCCTCAAGTGTTCCCGGAAATCTTAGGGTCCACTTCCTCCTAAAAGTCAGAAGCAGGATGCTG-GGACTTTCAATGAGTCATTAATTTGACATTCATTGGCCCTTTTGTTGGCAGAATTTAGGAAAAAAGTGGACTTATTTTCATGGCTTCTATTAAGGCTAATTCTAGGGATGGCATAAAATGCAGGGCAGCTGCTTGGAAATCCTTGGCGGCAGAATCCTGTGCCCTCTATTTACCAGTGTGGAAAAGGGAAGGTGGTCCGCAACTGTAAATCCAATAGACCCTCAAGAGCTTTGAATTGACCCTCAGTCTTGGTGTCTGGAAATCTATCATTCTACATAGACGCAGCGACTTGAGCTGAATGGATAATTAGTATGGTTTAGAAAATTCAACTCAACAAGTATTTGTTGAGTGTTCTGTGAACACACAGTGTTCAGGGCCAGGTGCTGGAGGAGGGAGGAAACAAGTCTGGGAGAAAATAGGCAACAATCTATGAAATGGTTGTCATCCCCAGAAGCTTTCCGTCTCAGTAGAGAGACAAAACACGCTTtggaaataatgagaaaataccCGAGACGGTATCTAATATTTAAAACCTT----TGAATATAAATCAGACCTGTGGCCCCAGCATGGGATACGGGTCAGATGTGAACTGGGAAGGCATAGGGATGGTGGGAGGTGACGAAC-TGTCCAGGGAGAGCAGGCGAGGGTCTATGGTAGGAATAGGATGAGGGGAAAGGACAGAATGATGAGCATTATG------CCAAAGTGGGAGGA------CATGG--AAATCGCACTGTTACAGTACTTTGACAGTGAAGATTTCTGCAGATCATCttaggaagtgtgtgtgtgtggagagagagagagagagagagagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgcctgcgtgTGTAATTCTAAGG

a score=45335
s chr3           101242935 895 + 160039680 TGGGAAGGAGCAGTGTGCAAGACAGGAACA-----------------CAGAACAGCTGCACGAATGCTCTTCTCGG-GCCAGTGGCAGAGATCTTAAGGCAGAATGACTGACACTGGTAGTGGGCACTGCTGTGCTGCCCTGTGTGGTCCTTGCAGAT-----------ATGAGtga----------ctgcatagcttccaatcctgacc-tctgaccttcccagagagtctatgtgatacccaacatcccataatgaattttctttctgcttaaactagctaagcaggtgattgtgttttcaattatagaccctgactgatacCCTGTGGATATAGCAATGTGCCGAGGTTTAATTATGAAGACAAAGTCTGCAAGCTACATGCAGAAATCAATATCATTATGTCTAGTCCCGCCTCATTGAACTCTGTGAGCTAATGAAGAGGTTTGCAAACTCAGATTA-CCAAATAAATTTGATATTATATTTAGAA-GGGGAAATAATTAAGAAAATTAAAATATACCTTGC-CGTCAGCAATTGT---------GCTTTTTATTACAGGGAGGAAGCTATTGTCTGT-TGCAAACTTAGAGCTGTATGGAGTTGgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtTTAAAGTTGCATCTGATCTGCG-----GCTTAGTTAAAAATAAGAAATGAATATTTGGTTCCAGTTGGGGTTGTTCGTGAACCCCTGCCAAGGTTATTATCACGCAGATACAAAGAGGTCAGCGTCATGGACATAAATAATCACACTGATTTTCCACACGATAGCCCACGGCGCCACGGATAAAGAAAAACTACTCATCTCCATTTCCATTCCATTTCACCTCTGCTCCCTCGGCCGGGAGTTTCCTCCT-GTCTGCCTCTGCGGACCTCGGTTGTCACTGTCCTTTAAAGCTCTTTTCAGATGCtgc
s HiC_scaffold_1 111256009 936 - 233722169 TGGAAAGCAGCAATG-GCAGAACGGGCACGAGGGCCCTATTGTCAAGCACAACAGTTGAATGTCTCCCTCTCTGGGAGGAAGTTGCAGAGATTCTTGTGCATAGTTTCCGGCTTCTCT---GGGTCCTGCTCTGCTGCCTTGTGTGGTCCTTGTAAATGCAGTCCTGTGATGAGTGATACTGTTTCCCTGAGGGGTTTCCAATCTTGACCCTCTGGCCTTCCCAGAGAGTGTATGTAATACCTAACATCTTCTAATACACTTTCCTTCTGTTTAAACGAGCTAAGCGGGTGATTGTGTTTTCAATTATGGACCCTGGCTGATACCCTGTGGATATAGCAGTGTGCAGGGGTTTAATTATGAAGACTAATTCCAAAAGCTACATGCAGAAATCAATATCATTACGAATAGTCCCGCCTCATTGAGTTCCGTGAGCTAATGAAGAGG-TTACAAACTAAGATTGcccaaaaaaattttatattatatttagaagggggaaataattac-aaatttaaagTATACCTTTCTTATCAGCAATTTTGCttcaatagctttttaaaatatgctggagtctattgtgtgtgtgtgtgctt-----------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcaagtTTGGTTTGATCTGTGGTTTAGtttagttaaaaataagaaatgaatatttGGTTCCCGTTGGGATTTTATGTAAGTTCCTGCCAAGGTTATTATTGCAAAGATACAAAGAGGTCAGCATCTCGGAGATAAATAATCACACTGATTTTCCACATGATATCCCACGACACCACTGATAAATAAAGACTACACgtct-catttccattttatttcacctCTGCCGCCTCTGCTTAGAATTTCTCCCTCATCTGTCTTCACATTCCTAGATCACAGCTGTCCTTTAAAGCTCCTTTTCAATGCCAC

a score=19708
s chr3           101260817 1138 + 160039680 CAGCTATTTGCAGCAGTACACTGAGCTCCATAGACACAGCACGGGAGCGGGCAAGAGCAGGACTTGCTCTGGGCAGCTCTGGGCCTCATGGAGGGAA--------ACCTGAGCAAAGGAGAGCCTAAGTA---AAGAGACAAATGTCTTCATATGCATCTT-TGTGCAGACTTGCCAGGAGAAGCACAGAAGAAGCACCGGGTGCCCTGTCAGCACCTCAGAGAGTTCTCTAAGAA---GTCTGAGAGGCTGGGACCCGTGTCTGCTGAAGAAAAGCAGAAACACGAAGACATTG-GAAGGCTGATGAGACACGTTACAAAAGAGAAATGAAAACCTATATTCCACCCCCCAAAAGGGGGAGACCAAGAAAAGTTTGAGGACCACAATGTACCCAAGAGGTCCCCTTCAGAATTCTTCTTGCTATGTTCTGAATAATACCCTCCCCCACAAATAAAAAAAGACCATCCTGGCTTATCCACGGGTGATGCTGCAAAGAAACCAGGAGAGCTGTGGGGGAGC-GCTGCGGAGGACAGGCAGCCCTGTGAGAAGGCTGCGGAGCTGAAGGAAAACTGCAGGAAGAGGGGGGC-------------ACTCAAGGCTGACACGGGCaggaggatgaagaggaagacaaggaggaagatgaagaggaaaagcaggacgaagatgatgaataagaTGGTTC--TAGCACAGTTCCT-------------CTTCTCTGTAAAGCATTTAAATCCCCACCCCATACACAACCCACTCCTATTTAAAAAGGAA-AAAATTAAAATGTAAGGCTGTGGAAGCA------------------------------------------------------------------------------------------------------------------------------------------------TTG------------------GCTTTAAACTGTAGTGTCTTCTTTTTTC----TTTTTTCTTTTGTACAGTTAACACACTACCAACTGTGTCTGTAGATGGCCCTGTCCCAGTGGTATTTTCAACAGCCGCTAACCGTGCCTGGTATAGCCTGGGGTTGTAAATTGGCATGCAAATTTAAACCAGGTTCTTGTTGGTGTACAGCACAAATGAG--ATATATGGGGACAGCAGGGTGGGGGTTGTTTTGGTTTGGTTTTTTCTCCCTATCTTCAGTTGTCTCTGATACTGCAT-TATAAAATACTTGTTGTTCAGTTAGCTGGATACCA-TCTGTAATTACAAAAGTAAAAATCTCAGCTGCTTTGTTGACATTCTC----TTTCTAAGTAAGTTC--ATTTTTA
s HiC_scaffold_1 220339613 1257 - 233722169 CAGCTGTT----GCAGTACATTGAGCTCCACAGAGACGGCACCAGGGCAAGTGAGAGCCTGATGGGCACTGGGAGAATCTGTGCATCCCAGAAAAAAACAAGTAGACTTGGGCAAAGGAGATGCTAAGAGGGCAAGGGGCAAATGTCCTCATAGGCCTCTTCTGTGTGAACTTGCAGAGGGGAGCACAAGAAGAACCCAGATGTTTCCACTGACTTCTCAGAGTTTCTTCTTAAGATGTGCCAGAGAGGTGGAAGGTCACGTCTGCTGAAGGA------CAATTTGAAGACATAGCAAAGGTGGACAAGGCTTGCtgtgaaagagaaatgaaaatgtgtgtT-----CCCCTAGAGGAGAAGTGCAAAAGAAGCTCAAGGATCCCAACACACCTAAGAGG--CCTCTCAGA-----CCTTATTCTCTTCCGAGTG------CCACCCAAAACTCAAAGGAGAACATCCTGGCCTCTCCAGGGGTGATGTCGCTGTGAAACTGGAAGACAAGTGGGCACACTGCAGCAGGTGACACACAGCCTGGGGAGAAGG-TGCCAAGCTGCAGGGAAAACACAGGAAGCACGTCGCTGCCTCCTACCGAGCTAAAGAAAGCCTGGTGCGGCAAAAC-AGGGAGATGTCAaggcagagagcagagaggaaCAGGAGAGCGAGGTGGAC-------acggctcagcagcacagcgcctgcctggcaagtagccTCTCTGT---TCACTTGATTcttgtaccaaaataaaaaata-----acaaaagaagaaagagaaggaagatgaagagacggaggaggagcaggaggaagatgaAGGTGATGATGATGAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAATGTCAGCTAGAAGATTGTTTTAACCTGTACTGTcgttattttacttatttatttatttcgtACATTT-ATACACTCCCAAGTG-GTCTGGAGACAGCCCAGG-CTGGTGGTGTTTTCAGTAG-CACTCAC--TGGCTGGCACAGGTGGGGGCTGTAAGTCAGCACGGGAACTCGGAGCAGGTTC---TTGGTGCACAGCACACATTAGTTATCTACAGGGAC-------------------------------------------TCAGTCTTCTCCACTGCAGCTTATACAAAATAACTGTTGT---GCTAACTGAATACCACTCTGTAATTGCAAAAG--GAAACTGCACCTG-TTTGTTGACATTCTCAGTGCTTCTAAGTAAATACCAATTTTTA

a score=31181
s chr3           101274781 1530 + 160039680 ctgtcttgaaaaTAAAAGGGAATGGGGCATAGGACTTAGTTTGTCTTTGACCTAGTCATTTA---CTGGGGTCT-AAACAAAAGGTACC-AGATTGAAAGTAAAGCATAGCTGAG----------CCCTCACAGGAAGTCCTTAGTATATTCAGTCTTTGTGGTTTAC-CCTCAGAGCTTCCTGCCAGCTCTTACCCAGGCTTACCA-GCCTAAGAAGACAAGAAGTGGGCAG-------AGCGGGCCACAAGTGTG--CCCTGTGTTGTAAAGCAGGTGCCT-CTGGTAGATGAGT-TTCCAATTTTAACCGAACAC---CTCCCCCAAC-------CTCAGCCTCTCCAGGGTGGGTCTGCCAT-ACTGCTAGTGAGACTGCTCTGCCCTGTTCATGAGTGTCAC-------CTACAGAACTCAGGA----ATGGAGCCAGAGGCGT-------------ATTAGCCTGCCCT-CTGGATGTTACCTGATGGGTTCTTGGTATCTCCAGTATCTATAGAGGCTCCCTCTTTACACTAATAATGCTACAGACCATTGTGAGCCCATTTGAGTGGTCAAGAAACTGAGT-----------------------------------------GTCCATGGGGCACCTGTTGTTAAAGTATGTGTA-----------------CAAAGGTGTCTACACAAGATGCTGGGACCC--CTTTGCAGCTGATACACAGGTGTCGGTTCTGGTCATTCAGGTGATGGCTCCTAAGATCAATCCAGTGGCCCGAGTGGACCAGATTTGATATTGT---CACCCCAACCAGCCTCTTTCCCAGTTTGCAGCTTCCTATCTCAGACCCTGGTCTCCTTTCT-------AAAACAAG----CAGGGTTAAATT------TTTATTTTACCCCTGCTCAAGGGAAG-TGGCCAGTGTCCATTGGGGCACCTGGGGGACTCGAACCTCTGCTCAGGTAGCTC---TGTAGGA--CATGAGCCAGC-GGTCATGTGGTAGCTCACATGGGTAGAGGACCTGAGAGGAAGG------------TGAAACCTTTATGCTGCTTGTCCAACATCCTTATGTGCACATGTTTGTGGTTTCTGTGTTTCTGCCGCGACAGA--TCTAAGAAGAGGCCTCAGATTCCAGAGGCCAGACCAAGTGACTGTGTAGCTGAATCAAAAGACACCACTTTGTCCTGCAAGT-------CTCGGGAGGCACTTGGGTCCTACTTCCATTAAACACTAGACGGAAGAGTGGGCATGCTCACCTGAAGAAGATAAATCCACACAGCTTTTTATTGGAAATGACGAACTCTGCC-TTCTTAATTAGGGGGCGGCAGTGAAACACCATCTCCACTCCCACAGGGAGGTTTTGGCTGAACTCGGGGTCTGGGTAAAGGAGGGCCTTTCTGCTGGTGAATCTGTGTGCCTGATGGAGGAGGTCTCTTCT------TCTGCTGGTGCTCACGGGTACGGTGGCCTGGAGGCAAGGGACGATGGCCAGGTGTCTGGAGGTGATGGCCAGGTGGAGGAGGAGCTTGGAGCGCCACTGAATTCTGCGCTGCTGCGGCTGGGGTTGAGTGCGGCTTGGGGCCCCTT---TCCACAGTGCTTGTTCTGGAAGCTTTTATTTCCAGCTCTTCATCTATAATGGCAAGACGTTTTAAGAACTCATTCTGACAA
s HiC_scaffold_1 111294628 1668 - 233722169 CTGTGTTGGAAAGTCAGGAGGCTG-----TGGGGTCTAATTTCTCAGTGCCCTTAATGATCAGACCTGGGTTCTGAAACAACACATGCCCAGATCCTAAGGAACAAGAAGTTGAGGCCGGGTAAACTCTCACAGGAAGTCCTGAGC-----------TTGTGGTTTATACCTCAGAGCTTCCTGCCAGGGCTTTACAAGGGTTAACAAGCCTAAGAAGTCAAGAGGAAGGCAGGTAGGCAATGGGACCACAAACTTGGTACCAGCTCTTCAAAGCAGGCACCTTCTTACAGCCTATTGTTAGAACTTCATCTGGAAACTGTCTCCCCcgccacacatacacacatcttCCAAAGTACAGCTGGTGTGACTGCTAGCTGGGGTGGTCTG----GTTTTTAAGTACTGCTTAGTTACTGTGACACTTAAGATTTGATTGAGTCA-AGTTGTTTTGTTGTCATCTCTTAGTCTGCCCTTCTGTGTGCTGTCTGATGGGCCCTCAGTGCCCAAAGTATTTATGTACTCTCC-TCTTTTCAGTGATGACTGCACAGATCATAATGACCACATCCAAAAAGCCAAGGAAGTGGGTCATAAatgattgcttttctttctttttttgttttaatgattgCTTTTCTGGTGCCTCTTGTTAAAGGGTATGCATATGAGTTTCAATGCACCACAGAAATCTACA-AATAGGTTGCTGCCCGGCGTGGCAACTGAGACATGGGGACATGTTCTGGTCAT---GGTAATCAGGCTTTAGGTGGCTCAGATGAGTTAAGGTGACTAAATCCAATGTTGTGGTCACACCTAGGAGCCTCTTTTTCAGTCTTCAGCTTCCTCTCTTAGACACTGAgctgctttttttcttcagttaCCAGACTCCAGGGTCAAATTagagtttttatttcattcctaCTCAAGGGTGGATGACCAGAGCCCACCAGGGAACACAAGAACCCTAGTCCCTCGAGCAAATAGACCACCTATAGGATGCTCGGGCCCTCTAACCAGCTGGTGTATCACATTTGCGTAGCATCTGAGAGGGAGACAAGAAGATTGCTAAGACTTTTATGTTCTGTCACCCATCCCCCTAAATCCACACATTGTGGCTCTCCATGAT------GTGACAGAGATCCACAAGGAAGCCAAAGATTCCAGGCATTAGATCACATG--------GCTGAGTTGGAAGGTGCTGATGTGACTTGGACACAGCCTTGCTTGGGAGGACCTCCTGTCCTGTGT--AGAAATCACTCGAGGAAAGAGTGGACCTGCATGTA-GGAGTGGAGGAATCCACAGagccttttattaaaaaggataGTTCCAGTCACTTTTAATTAGAGGCAGGGGATGAGGAGTTTTCCGCAGGCCCACGGGGAGGTTTTGGCTGAACTCGAGGTTTGGGGAGGGGAGGGCCTTTCTGTTGCCGAACTTGTGTGCCTGTTGCAGGAGGCCTCTTCTGAtaccgctgctgctgctgctgggtgtggtgggcagGAGTCAAGGGACGATGACAAGGTGCCTGCGAACGATGGCTAGGTGGCGGGGGCGGGTGAGAGGCTAATGGATTTTGAGTTGATGGAGGTTGGATGGGGGAGGGCCTTGGGCGCCCTTCCTCCTCCATGGTTTTTCTGTGGGTGCTCATATCCAGCCCTTCACCTGCAACAAGAAGACCTGTCAA-AGCTTAACCTAGCAA

a score=66496
s chr3           101276694 6604 + 160039680 [encoded data, 7518 characters]
s HiC_scaffold_1 111296307 6928 - 233722169 [encoded data, 7518 characters]

a score=32870
s chr3           101285749 2575 + 160039680 TCCAAAAGCCCCAATCCT-AAACACTTCTAATCTCAAACTCATTAAGTAAGTGATACACAACCTGCACTGGGTAATCAGGCTTGGGGTGGGTCAGAGGACAATTTTCCAATGCTGCGTAATATATAGTCGTATATAGTGGGGACAGGTCCTCAAGTTGAGTCAGCGTATTGTGTGACCTTGGCATTTGCATACAGTAGTGAAGCCACCG-CTGTTAGTCGGAgggtatgggtttcctttgaggggggtagggaaaatgttgc---ctatggtggtaaccgcgtaactctgtgactatgcagaaagctgttgaactgcgcacggcaaacgggcaaactgtgtggtatgtgaattgtataccaatgaGCTTGTTTGGG---------ATATCACCATCCTTGTCAAGGGA------------AGGCCTGACCTTGTTCCTGTCTAACAGTGAGAACACGGCC-----ACTTCTGGCCAGGCCCGTTTCCTTATAGGTG-GATAGAAGCTTGTAATTTAAAGTTCTCAGGATTGCCAAAGAAAAC-CAGGCTACC----TAACAAGCACCTGACTTCTCTCCAGTAGCCATGGTCACCGCA-----------GTGACA-------GAGTACA---------------------------------------------TGAATAGGCTATACAGGGTTCGATACGATGAGTG--------GTCGTTCTCATTCCCACCCCGTTTCTGGGACATTCTCTCTAG--ATAAAGTTACAGGATTTGGGTCTGGGAAGAGTTGTGCACAGAGGAGCTAACAGGG----GGCCCTG-GAGAGAGGTT--GGTGTTAGGCCCAGGTGCTGAGTATTGGACAGGAAGGACACCCACGGGGGGATGAGGGGA---GCCCTTTCTATAGTGACATTTCCTGTGTGAAGCTCAGAA--TGTTTGTGTGCTCCCTGAATGGCTGATCTAT-TCTGCACAAGGCATTCTCAGCTTTCTCCGCAAGCCAAGGGCAGGCTTTCTCCTCTCACCCATTGGTGTGAGCTGCCAGTTTGTCCCTGGACTTTCAGCTTCGACAGCATCCCAG-------GCTTCGTTTTCTTCTTTCTCACCCACCCAAGCTTCTTCACTTCCTCCTCACCCCCACACC-CGGCATGTTTGCACCCTTCCTCATCTCCCTGGCACCCTTTACTCCAGGCCAATGACTATCAATGACAACTCTTCTCACTAGAAGCTCTTGGAACGCTATAGATCC---------------------CACTGGCAC----ACATACT----CCATGCTGCCAGGAGCCTGGGCATGAGTCACTTCTTACAGCTCACTTGCTGGTTCTCA--------CCAAGACTAAGACCACCTGCT---------TGGCTTCGCTTGGATGACAGGAGAGGACTCCTGGTTGGTCT-------------------------------TCTC---------------------------------------------------------------------------------------CTGTTGCTCTTCAGTATCAT--------GCCCTCTC-----ATCATACCCTGGCTTAAACATAGCTCTCCAGACAAGAGGCTCACTGCTC-CTAGGCACCCTCTG-----------ACATCCTGTCTAGCTACAGCTTCATCGGCCACCAAGGATGTCCATGTCTTTTCTCTGCTAACCTGTCTTCTTTCTGATTAATGCCTGTCTGTCACCTGGGAGTCTTTGT-------ACAACCCCACAGCCACCCAAAGAGAGAATGAAAGGCAGACAGGCTTTAG------------------------------------AGCCACCCTCACCC------------ACTGGAGTCTTCATTGTGGGCCACACAGGTAACATTGGAT-------------------------------------GGGGATGCTACAGAAAGGCTGCTCCCCAACTTTCTACATAGCAGCCGTCCTAAAATGAAAACCTTTAGGGAATGGAGACTTACCCAGAATCCTCACGTCCAGGTCCTTCTCCAGCCTAGTCATCCCATTTGTGCCATACACCATTACATTATAGGTGCCACTGTCGTTTCTCATCATCGGCTTCTTTATCTTCAGGGATCCGTTTGCTAAGACCTCATACGTTTCTGATATCAAAAAAGGTGGCTTCTTCCTTTTAAACTCTGCGACCAGGGTGCCCCTCCTTACCCATCGCACCTCATCAATATCATCAGTCATTTGAAAGTTGGGGATGTTCAGGGTGATGCCATGACCCAAGACACCCCAGATGGTCTCATTGTCTCTGCAGTCCGCCCCTGTAAAAAAGTAAGATGGTTTCTGAGGTCTCGGGACT---ACGGAGGATCTC----------CCTCTTCGCCTCTAATGTCCACTCCAAGGTCTCCGGAAGAGC---------------------TCCACGCGAATGCTTACCTTTGCCGGAAAGGCTGAAGAGCAGAAAGAAGCTACCCAGGAATTTACAT------TTCATCTTTAGAGTTCTTTTCCCAGGGGTGACTCTGAGTTCTTTCTGTCA---GGACTGTGGTGAGGCTGGCAGAAGCCACACCCAGCAACCTGAACCACGTGTCTTTCATGCCTGCTGTTCACAGTAGgggagggggagggggagagggagaggtagagatggggaaggagagagagagagaCAGAGACCCTATCAAAACGACTCATGCATTTGCTGCCCTCCTTAACCGAAATAGGTG-----TCTGTGTCACATTTTAATCTTTACAAAAACAGCTTA----GGGTGTTGGGTTTTAGCACCCCACCAGAGGAAGAAGAGGAACTGGGAGGTCAGT-----TGCCATAGCTACCCTTTTGTAAACAAGGGCTTAAACATAG---------CTGGCCACTCAGCTGTGCTGCCTTCAACAGGACCAAGTAGACTCACCGGCAAAAGGTCATAGG-----AATAGAATTCAGATATGTAT
s HiC_scaffold_1 111305507 2878 - 233722169 TCCAAAAATCCAATTTCTGAAATATATCTAGTCCCAAACATGTTAGATAGGGGATACTTAACCTGCATTGGGAAAATAGATTTATAGCAGGCAGGAG-----TTGGCCACGTCCATGTGACAAGTAATGGT---------GACCAGGTTAT------AACTAAAAGTGCTGTGTGATGTTG--ATGTGCACACAACAGCAA---CACTGACTTTTGACTAATGGGTACAAGGTTTCTGCT---GGAGTCCTGAAAATATCCAACACTATGATGATAAAGGCTCAACTCTG--AACACACAGATA-----cacattttatactttaaatgtaTGCATTGTGTGGTGTGTGAGTCATATCACAGAGAAGCTGCTTGGAGAGTGATGAATGCTACTGTTTTTGTGAAAGAAgtcctgggtttgaatcctgatTTTGCTGCTGTCAAGCGGTGAGAAGCGGGGTGAGGAACCTCTGAGTAGGACTATTTCCTTACACGTATGAGAGAA--CGATAAATACCAGCGCTCAGCATCGTTGGGGGATTTACATACTATCATAGTAACAAGCCCTTGCCACCTCACTGGTAATTATTATCACCCCACAGCACTACATGTGACACAAATGTGAGCCCAACAGGATGGCGCCCTGCGTGATGCTCACTTTTGAAATGGGACTCCTGAAATGTGCATGTAGGAGTTGCACTGGCAGCTGCCGGCAGAGCCATTTTGGCTCCCACACCACTTCTGGAGAACACTCTCCAGTTCTAATGTTGTGGTTCTAAGGTAGGAAAGGGGCCACTTGC-GATGAGCTGACAGTGTCTGGACTGTGTGAAAGGGGCTCAGGTGTCACCTGTGGCTTCTGGG----GACCAGGCAGGAGACCCTGGGTAGGAGGAGGGCCCCTGCCCAGCCTCTAGTGACATTTCCTGTGTGAAGCACAGAAGGTGCTCATTTGCTCTGTAAATCGCTGGCCTGTGCCCGTGCTGAG-ATGCCTGGCTGCCTCACCATGCCAAGGGCAG-CTTTCTCTCCTCCCC-----GTCCAGGCT----------CCCTAGGCTTCAAACTCCAGTGGCATTGCCGCTGTCCCGCTTTGTCTCCTT--TGCACCTTCACACAAGACACCTTGTCCTTCCCTTGCCTGCACACAACCCCAGGTAGACATCCCTCCTCATGTCAC----------------AGTGCACTGGCTG---------------CTCACTGGAACCACTGGGAACCTTTAAGAACCATTCATGTGTGGGCTTCCACGCCCTGACATTTCAATATAATTGGTCTATGATG----GGGCCTGGGCACTGGTGACTTCTAACAGCATCCCTGTTA-TTCACATCTGAAACCCAAGTTTAGAACCACCTGCTGGCTCTTCCTGGCTTTGCCTGGGGTACAATGGCAG-CTTGGAGCTGGTCTCCCACCTCCATCTCAACATCCACCCTTAGCCTCTCAGACTATGTGAAGACAGTCAAAGCCACACCAATAAAAATCACTTTCTACCTCAATTGCTATGCTGTCGAGCAGATCAGAAACAAAGACTGTTCATTCTTACTGTCATTGTTGCCAGCCCTTTCCTGCCACAGAACCCTGGTTTGAAATTGGCTCTCTAGACAA-AGACTACCTGCACTCCAGGCCGCCTCTCCCTCCTCGTTCACATCTTGTTCA----CACCTTCATCACACACTTGGGACA-CCATCT-TTTCCTCTCCCCACCCATTCCCTCCTGGATTAATGCC-ATCT-TAATCCAGGACCCCCATTCAGCCCCACCACCCTGCAGCCACCTAAAGAGACAGCTGTAAGCAGATAGGCTTGAGGCTTTACTAGCTGGGCATTTCCTCCGATATGAACCCATCCACCCACCCCACAGACACGCAAGACTTGTGTCTCCAT---GGGTTTGAAAGGATACATTGAATTTGCTTTAAAGCTACTCcagaggcagaggccagggcTGGGAACATTTCAAAAATGCTATTTCTCAACTTGCCAAATAGCACTCACATGGAGATGAAGAAATGTTGGGAA----GGCTTACCTTGAATCCTCAAATGAAATTCTTTAGCCAACACACATGTTCCATTTGTATTATATATGATTACTTTGTAGGTATTGTTAAAACTTCTCTCCA---GATGTTTAATTTGCAGAGTTCCAGTTGGTAATATTTTGTACGTTTTGTTTATCGCATACAGTTGCTTG---CCTTTGAATTGTGCTACTCTGCTCCCTGCTGTTTCCCATCGTATCTCGTCGATAACATCACTCATTTTAAAGTTGGGAATATCCAGGTTTACATCCTGACCCAAGGCACCCCAGGCGACATTAACGTCTTCAACGGTTGAACCTGTGAAAAA-CGAACCAGTTATTGGGGTCTTGAGACTCTGCCAGAAAATTCTGGGCTGTGAACACTTTTAAATCCTGTGCTCATTTCAGGATGTCCAAAAAAGCGTCTTATCGTGACGGTGAAGACCCACACACCAACTTACCCTTAGCAGAAAAgctgaaaagcagaaagaaactgGCTAAGCTTTTATATGGCAGGTTCATCTTTGGGATTCGTTTCCTTGTGATGATTCTGAGCTCTTCTTGCAAAAGGAACTGACAAGAGGCTGGTGGAACCCAC-CCCTGAGGAAAGAACCACGTGTCTCTT-TGCTCCCT-----------------------------------------------TAACGGGCAGAACACTCGCACACACTC-AACAAAGAGACAC-TGCTCAGGCTGC------TTGCCAAAGCAGGTGTGCTTTCCTTATCACTGTTTAAGTCTCACCAAAACAAAGAATGAGGAGAGGTGGGTTTTATGACCtcactgaag--agaaaaggaaCTGAAAGGTAAGTAAGTCTAACAGGGCCATCTTTTAGTAAATGAAGAGCCAAATTTAATGTCACAACCCAGCCACTCGGTTATTTCACCTGTAACAGGACCACATAGAAAGATGGACAAATGCACACAAGCAAACAGCAGAATACAAATATTTGT

a score=8515
s chr3           101291200 787 + 160039680 GGTGGGGTAGACCTTGGCTTCATCTGCCTTAGTGTCAGCAAAGGGGAGGGAGGTTAAAGCTCTCAGATGCGGACAGCTGGTCCCAAGGTGACCAAGGCAGGTACTGTCCTTGAGTGGCGGAGCGGGAGCAGAGTTTGCACACTAAGGTCGGTCTGCAGGAGTTCAGCGCTCTGGGACCTCCTcttccggccttcctcctagaggaaaaggaaacaccttttacaaatagatacttcctctatacatgctaatatccctt-tcaaaggaaaccttgcatcctatttgtggttctttctttgtctctgagagttctcaacagcatttggcataaaataatctgcgttccaaagaggcacaatt-------tgggatgcatattttgataccctttaTGACAAaaaacaaaacaaaacaaaacaCATAAGCTCATCTTATTTCATAAAAAGACATG-----GGGTGCCC------TAGAGAAG----------AGTCTCTG-----TTAGGGGACAGTGGCTGCTATTC---------TGCTTGTAGCTGCTAT-TTAATACTCTTACCTTGGACACGCATTGCTTTTG-ATCGATCGAGTCTTCATCCTAAGGGTGGCCCGTCCCTT----------CTTACAGCTCCAAGGTTG----CAGCCTCCACCTT-GGCTGTGTGGGTTTCCAGGACACAGCTGGTGGGTTCTCCCTCCGGCTTCTCCATGTGCAACATGCCCTACAGTCCAATGCTGATCTCCTGAGCTCTCTCCACTCCTT----TTTCTTGCTCAAACTAAGGCTCCTGGGAGGTAAATTAACAGGACGAGAAGATGAAACGGAGGAGGAGAG
s HiC_scaffold_1 111311297 769 - 233722169 GATGGGTCAAATTTGGGCTTGTTCT----TAGGCTCAGCAAAAATGAAGAGGGGTAGGGATTTGGGGTGGGGAAGACAAGTCATGGGATGCCAGGGAAGAGAGGTGTGCAAGGGTGTTTTAGTCGGAG----------ACA-TGAAGTCAGGTGATGGAAGCTGAGAG----------TCCTCTTCCTGGC--------ACAGGAAAGGGTGGCACTTTTTACAAGTAActatttcctttataaatgtaaGTTCTTCTTGTGAAAGAAAactttgtgcctgattttagagttTGACTTC-TTTCTGCTGGTTCAAGCCGCCAT--AGCTTAAGGTAGTGCCCATTGCATAGAAGCACGTTTGCCTCTGTACTCCGTACACTCTGGTTGCCTTTT---CAGAAAAT--------------CATATAAAATCACTATATTTCTCAAAAGAGTGCGTGTGGGGGTGTGTGTTTTGTTGGGAAGGCGGAGGGGCAGTCCCTGCATGGTAGAGGGGTGATAGCTGTTTTTCCATTGTCCTTGGTTATTGCTGCTACGCTGACATTTCTGCTTTG-ATACATGTGGTTTTTCCATTAAATTCGTTTTCATTCTAAGTGCCTCCCACCCTGTTTAGTAGCAGCTGCCAGTACGGAGGGTGGAGACAGCACCCACCTTTGGGTGCGTGCATTTCAGTGA---ATCTGGT--------------------CCATGGGC--CATTCCAGTCTCTCCCGTTACTATCTC---ACCTCTCTCCATCTGTTGACTCTTCTTCCTGTAACTGAAGTTCCTGAGAGATGGAATAACAGGAAGAGAATAAGAAGCAGAAGAGGAGGG

a score=7185
s chr3           101295500 321 + 160039680 aaaaaAAAAAAAAATAGGAGAGAAACTCGCTGAAGAGGGAAGCGTCTAGGTTTGGCTTGGCTCAGAAGAGGCCTGATTCCCCGGCAGGAGAGAAGGCAG------------------AGCTGAGC------------GCAAATCTCCAGCAACCACATTCCTTCTAGCTCGCTCCAGCGGCTTTCAGGACCGCTTTGTTGCAAAAGACCTTCAGGCTAAGCCCCTGTCTCCTGCTGCCACCCTCTGGCAACAACCTGAATTGCACCCTTGCTAATTTCCTTGCCCGGAGTTAAAACACTCAAACTTGTATTTGAATT-----GCGGTTTTTCAGTCTACTTTCCTCTCCCTTTAAA
s HiC_scaffold_1 111314529 329 - 233722169 AGGAGAGAATAAAATCTGGAAAAATCTCTCCAG---GGGAGGCTTCTAAG----GTGCAGCTCAGCCTCGACCAGATCCCACACCAGGAGAGAAGGGAGTCTCTTCACCATCAGGTGAGCTGGGCAGAAAACAGACCGCGGAGCTCCGGCAGCC-CAGTCCCTCCA-------CCATCCTCTTCC--GCCCCCTTTACTTCAAAAGAC-TTGAGAGAAAGTCCCTGCCTGCTACTGCCACCCACTGGCCACAACCTGAAATGCA-----ACTGATTTCAAGGTCAGAAATTAGAACATTTG----TGTATCTATATTTGCAGAAGGTTTTTTGGTTTATACTTCCCTTCCTTTAGA

a score=38149
s chr3           101299846 1281 + 160039680 ACCTTTTTCCCCATTACAAAGA-TGCATTCTGTGGGGTGGCTA-AAAGTCCACAAAACCG-----------TTTCATCGTTTATGGTTACGAAGCAGCA-TAAGCTACTCCTTAATAGATTATCCTGATTTCCCAAACAAACACCAGAAAAATGGGACT------------------------TAGGTCTATTGTAG------------ATCCTA--GTTTGGAATCAGTAGG-GAGCCCCAATAGTATTTGACATTGTGACCTCATGTAGAAGC--CACTTGTGCATCTCTGAGCCTCATCAAAAAGAACTAGCAATACAGAAAGTCCCCGGATAAGGGGTCCAATCCTAAAACTACCACCACCGAGAGCT--------------------GTCATCTGTCCCTCTCCATGGTCATGGGGCAGTATCCTGTGCCAG-CTCCTGCCAAGTGTGTATTAGTAAGTTCTGAACTGTGTTAGCAGCTTCGTGGTTTTCTGTAGCCTTTTGCAGCCTAGAAAACAGTTTCCAGCAAGAAGCCCCTGCTGTTCGATCCATTACGTGTGAAAACAGATAAGCCTGCGCATGTCCGCTGGGGGCTGGC-----------------------AAGGGGAGGGAACTTAAACAAGAGCTAATTTGGCCTGTGGGGACTAGCTGAGGAAGG-GCAAGCTGCTCTGGCTGGGAGCGAGGGGCTGGCAGAGGAGTCTGCCGCA---TACCGTGGCCACTTAAGGCTGGAGCACATGAAGGTCTGTTGTCCGCGGTT------TGAAGAACGTT-CTGCAAAG--------------GGCTGGTTTACAGAAGGGGAAATTTTGATCTCACAGCACAGATCCGGTTTCCTGAGAACCATCTGCTTGTTTTTCTCCTTCCCAAAGAGCCCACAATCTCTTGTGGGAAAAATTCAGAATGTTATTGGCTTTCCGAGGAGAGGGGATTGGAAATGCCAGATAAATAGAGACTGCAAGCGACAGGGTTTCATTGTGTTCCCCTCGGGCTGTTGGGGAGAGCCACATGGTGAAGCCGTGAGACTGTGGATAGAAATGCAGA-----------AACAGAACTGTGGGCTGGGGACAAAGCAACAGGGGC------------TCTGCTGTTTAGCCAGACCACACT-----CACGTTCCCTGTCACGTGAGGGGCAGGCAGCATGGACCGCGTGTGTCTTGCAAAACTACATGAGGATCCAAGGAGAACAGGGATATATAAGAATCTTGGGACTCAGCCGGGCAGGTGCACTCGCG-------------TCTGCTATGGAGATGTCACTTA-AACCCAGCCAAAGCTAAGCTGTTCATCTGCCCACGTTTAAAGCAAATCTTAACTGAATTCTGTACTGGAATGCTTTTGTCTGCCTGTGGCAGGAACCCAGTTTAAAATGCCTCAC
s HiC_scaffold_1 111317983 1411 - 233722169 atttgttttcctattcCAAAAACTACATACCATGGGGTGGTTAGAAAGTTTGGGAATGCAGATACGAGGATTCTTGTTGTTCATTGTAATGTAATATCAACAAGCCATCTGTTGAAAGATTTTCttgctttccaaaaaaaaaaagaaaaaaaagaaaacaataaacaaaccaGACCATTGCAGTGTGCCTGTTGGAGCAGAGTCGCTACACCCTGAGGTTTAGGATTAGCAAGAGAACCTCCGCACCCTTTGATACTGTCCCCTTTTCCAAAGTCTCCACCTGCTTGTCTCCTGACCTCA---GGAAGGGC-----------GAAGTTCCTGGAAAGGGCATTGTATTT---GGCCACTGCTGCTGTGGGCTATGTCTATATCCATATTCAAGtcccttctccttttccctgggGACAGGGACGTGTCATATGCCAAACTTGTGCCAAGTGTTTATTAATAAACTCTGAACCATATTGGCAGCTTTGTGGTTTTCTGCTGGCTTTTGTAGCCAGGAAAACGTTTTCCGATTAGAAGCCCCTGCTGTTTTATCTATTACACATGAAACCAAATAAGTCTGTGCATGTCCACTGGGGGTTGGAGAGTAGCATCAGAGTGTGCAGTGAAGGGAAAGGAATTTAAAAGGGAGCTAATGTCATCCATGGGGAATAGCTGGGGAAAGAGAAAGCATCTCTGG----AGGAGAGGGGCT--CAGGAG-GTCTTTCACAGTGTATTAGGGCCACACAAGGA-GGAGCACATGTATGTCTGTCATCTGTGGCCCCGAGATGGAAAAGGCAACTGCAAAGACAGCCATGCCTTGGGCTGGTTAACAGAAGGA-AAATTTTTATCTCATCAAGCAGAGTCGATTTCCTGAAAGCCATATGCTTGCCTTTCTTTTTCCCAAAGAGCCCACAGTCTCATGTGGGAAAAATTCAGAATTTTGTTGACTTTCACAGAAGAGGGAATTGAAAATGTTAGATAAATAGAGACCACATGGAACACAATTTTATAGCATTCCCCCAGGGCTG-TAGTGAGTGCCACCCTGTGAAGTTGCAGGATTAGGGATAGAAA-GCAAATCTGAGATGTGCAAAGAGCTGTGGACTAGGGATAGGAAACCACGGGCTCTAGTCCCAGTTCTGTTGCTAATCTCTCCCACACTACAAGAGCTTTTCCTGTCATATGGGAGG-GGGCATATTTGGCC-TGGATATCTAGAAAAATGCCAGTAGGATCTAATGGGGCTTTATGTGTGGAAGTATCTTGTGATTCA-----ACAGGAGCAGTCAGGTGTTAGGTACTGTTCTTCTATGAAGATGCTACTTACGACCCAACCAAAGCTAAAGTATTCACTTGTCTACTtctaaagcaaaaattaattGAATACTGCATCAGAACAC-TCTGGCTGCAAGTGGCAGAAACTCAATTAAAAATACTTCAC

a score=45935
s chr3           101307192 1226 + 160039680 GGGACGAGGctttcttatatggagtcaaaatgtgtctctgagcgacttccacccatttgtcttggctctgctctctgaagGTGGAACAGgccaatggcccttt-gaaatgtgctgcccagagagaaacaca-gactccaaatgtggtctgaTTTAGTTAGAGCCCCCGTGGGGAATTG-GGAGGGGATGGGAAATAATGAAGCCACCAAGTTAACCAGCTTT-AAAAATGACAGACATAGAAAGTGCCCATAAGTGGAATCTTAGGATCACAGGCTAATGGGAGACCCTGAAAATACCCAGCTGGGCTCTCTCCC-ACAGAGGAAACTCACACCTTAACCTGTCCAATCCATCGGGGCTGACCTGACCTATTTTTAAGTTCTCCTAAAGAGAGAATTCCATGCATGTCGACCATGGAGAGGTTTCTCACAAATCACACAAATCAGGCATTACGAAATATTTTCAAATTGGTGTTTTCCCGTAGACTAATTTATTTTTGCATTTCCC-GTCTTGCGTGCTATTATCTCTTCTGCCACATAAACTGTCTCCCTAATGAAGCCGCTTATTGTATCATATTCCAGGAGTGTGCGTTCATCTGTTCCTGCAGTGTTTCGGCTCCTGCTGCATTAATT-ACCACACTTCCTCTATTACTTGCCTCCCCCCCCCCCCCCACAACATTGGATGCATGCTGTTCATCTTTATACTGTTGCATGGCTTTTGGTAAGATGGTTGCATTCTCAGAAGTGGGGGCAAATCCAATCTCGGTCAGATGAGTCTCTCTTCAATTAGAAGTGCCTTCCAAATGCA-TTTGAGTGTTTGTTATTGGGAGTCGCTGTCTGGGGGG------GGGGCAGCTTAGGAGAAGAGAACACAGAGCTCTTGGAGCCAGAGAGGATAACACCCCAACTTGGGT--------GGGAAGGCACAAGACCTC--------------------------------------------------CTCAACA---TGGTCAGAAGTA-------ACTGCACTCTGTTCCTGCAGCCCCAAACCCAGCCCTGTCTCCCTGTCTTCAGAGTGAAGAATCCTTTTTAAAAGTGAATGCTCTTC-TCAGTGATTAAAACAAAAAAAGAACAAGTCCTCGAGTCCCTGCATGA-GCATTCTTAAAAGGGA-CACAGCATCTACCAACTCCCTTCTCTGCCTCCTCAGCAAACCTCC------CCAGTG---------TCCTCTGCAGCCC-----------------CTTCCCATCTGGTGCACAATAGAGGTTAGCTTCATCAGGGCCATGATGGTTTCACCAGGTTGCTGCTCTAAT
s HiC_scaffold_1 111328391 1277 - 233722169 GAGAAAGGGTTTTCTTATATTGAGTCAAAATTTCTCTCTGAGCAACCTCCACCCATTTGTCTTGGTTCCATTCT-TGGCAGCAAAGCAGGTCAATGTCCCTTTTAAAATGTGGTGCCCAGAAAGCAACACACAACTCCAAATGTGGTCTGATTCAGTTAAAGCCTT-GTGGGAaattgaggaaggaaaaaaaaataataaagccacCAAGTTAACCAGCTTTGAAAAATGACAATCATAGAAAGTTCCTTTAAGTGGAACCTTCAAATCATAAACTAAAGGGAATCTTTGAAAATATCCAGCTGGTCCCTTTCCCCACAGAGGAAAATCACACCTAAACCTGCCCAACCCAGAGAGACTGGCCTAT----TTTTTCAGATATCTTAAAGGTAGAGCTCCATGTTTATTGATCACAGACAGATCGCTGACAAAT-----AAatca----ttgtaaaatattttcaaatcagtgTTTTCCAGTAGGCtaatttgtttttacattttcctgtCTCCCTTGCTATTATCTCTCCTTCCACATAAATTACCTTCCTAATGAAGCCGTTTATTGTATCGCATTGTGGGAGTGCCTGTTCATCTGCTCCTGTAGTGTTTCAGTTCCTGCCGCATTAATTAACCACACTTCCtctattattttcctctttttt----------gcatGAGATCCACACAATTTATCCTTATATTGTTGCATAATGCTTTGTGCGATGGATGTGTTCTCAAAATTTTGTGCAAATCTAATCTTTGTAAATTGAG--TCTCTTCAATTAGAAGTGCCTTCCAAATGCATTTTGAGTGTTCATTATTTAAAGTTGCTCTGTGGGAGGTATCATGGTACAGT--------GGGAAACATAGGGTCTTTGGAGCTAGAGAGAATAACCCCCAAATCTGGGTCTACCTCCTGCCAGCTGTATGAACTCAACCGGTGATGTAACTATGAACCCTAGGTTTTAATCTGTGAAATGGAGATCCCAACATgctggtgaagaatataaacatgcTAAACACAATTATTGCAGCCTAGAAGACAGCTATGTCTTCCTGTCTTTAAAGTGCATACTCTTTTCACCAATTTATTTTGCTACTTCAGAGA-----------------------------CCCCTGTATCACACATTTGCAAAGGAGAGCACAACATCTATTGGCTTCA--CTCTGTCACTCTGGCAACTTTCCATTCAAACAGTTCTTGGGTTCCCCTCTAGAACTCCGCCCTGTCTGGGCGATCTTCTCTTCTGGCCCACTACAGAGGTTAACACTAACAGTACTAACAACAACTCCCCAAGTCCCTGTTCTTAT

a score=16328
s chr3           101310824 673 + 160039680 TATAATTTAAAAAAGAAATAGCTTTGCAGATGCTGCTGTCCCC---------TGTCACCTCTTTCTGCAGCCACGGTCAACCCCTGCA-GACTTCGACAT-------------------TGGGCCATGTCCCCTTCAAGTTGTTTGCAGACAAAATTCCAAATACAGCAGAAAAC-TTTCATGCTCTGAGCACAGGGGAGAAAGGATTTGGTTATAAGGATTTCTCCTTGCACAGACTTCTTCCAGGATTTGTGTGCCAGGGTGGTGACTTCACACGCCATAAAAGCACTGGTGGCAG--GTCCATCGA-------CGGTGAGAAATT--------------------------------------------------CAAGAATGGGGAACTTCA-------ACCTGCACTGTCAAGGCTGAGTAGCCTGCTGAGAAGCACGTGATCTCAGGCATGGTGAAAGAAGGCATAAGGACTGTGGAAGCCACGGAATGCGCTGAGTCCAGGAATGGCAAGACC---AGCAAGATCACCATTTCCGACTGCAGACGACTCTAATGCTTTGGACTTGAATGCATCTTACCCGCCAGACCTTTCCTTCTGTAGCTCAGGAGAATGCCCT-TGCCCCCTCTGCTTGCAGTGCTCTGCAATCTCTGCTCTCACCGAAGTTCTTGGGGTTCCATATTTTTCTCATTCCCCTCCAAGTTTAGCTGGATTGCAGAGTAAAGTTTATGACTATGAATAAAATCTAAATAAATGTTAAAAGTGATA
s HiC_scaffold_1 161260755 739 - 233722169 TatgaattaaatcagaaatgGCTTTGTGGATGCTGCTACCTTCCTATTTAGTTGTTGCCTGC-----CAACTGTGGTCAACTCCAGTGTGTCCTTGATATCACGCCCATGGCAAGCCCTTGGGCTGCATCTCATTTGAGCTATTTTCAGACAAACTTccaaagacaacagaaaacattttttgctgtgaacactggagagaaaacatTAGGTTATAAGTGTTCCTGCTCTCTCAGAATTATTCTGGGATTTATGCTTTAGGGTGGTGACGTCACAGGCCACAGTGCCACTGGTGGCAAGTGTCTATAGGAGAAATTCAGTGAGAAATTCATCCTGAAGCACACGGGTCCTGGCATCTTCTATGTGGCAAGTACTGAACCAAAAATAAAGGGTTTCAGTTTTTCATCTGCATTACCAAAAGCAAGAGGTTGGAAAGCAAGCTCATGTTCTTCAGGAAAGTGAAAGAGGATATGAACTCCA-GGGTGCTATGAAGCGCTTCGGGTCAGGAAACTGCAGGACCAGGAGAAAGATCAACATCGCCGATCGTGAACAACACACATGT----GACTCCTTTATATCACGATCACCAAAACCAT--TTCTCTCACTCAGAAGGGCACCCTGCGACCCACCTGCTCAAAACACCTCATCATCTCTGCTGAAACTGCAGTGTTCTGGgttccatattttcctt----------------------tttgcagAGTTTAACTTATGGTTATGAATAAaacctaaataattaaaaaaaaagaca

a score=32330
s chr3           101311733 2100 + 160039680 TAGAAGAACTTGGAGTTGTGGATTCACTATC-ACTTGGCAATCCCCTGTTCACAGCTgctgtgtgagacagaaaagaacgagtg---------tcatgtcttaaccgtggcacggagatttgttttctgtata---aatctggaggtgagcagtcccgggctggtctgttggttttgtggcatccacaggccaggcttctgtcttgtttctctttgtcatcattagtagcagtatatggctcctaacctcaaggacact---tcaaagctgctggaactccagccaccatgtccgcattccagacaggaagtggtcagaaagcaaaaggaCAAATGG---CAAACAAACAGCGACAACAGGCAGATCTGGGCCCTCTTGAT----------------GATCCTAAGCCATTTAA-----------CAATGTC-----------------TTTATGAGCA--CTCAAGCTATAAGCCAGCCTGGAAAAGGTT--------------CATTGCTACCTAACATGGAATCGCAATTAGCAG------------CCCAGGCAGTGTTGGAGGGAGATGGAAGTCTAGTGGGTGGCCTTTGTCT--CCTTTTGTTTCTACTTTGTCCCTTTCTCGAGTCC-CTTTAGGTAGTGTCCCTTAGAAGCAAGGAAACCCTCGTGGGAGACAGAAGAGTGGACAACTCTGTGGCCTGTTTCTGT--TTCTGCATCATGGGGCAGGGC------------ACTCTGAGAAG--CAAAGCCAGAAATTTGTCTGAGCAGAGC--------------ATTGTGCAAC---CACTTCATCTCCAGTGGCTCCCCTCTTTCTCATAGCTACTCTATGAGATGGGCACAGTGGCACCTGCACTGAGGAGCCAAGGACCG-----GTGCCAATCAGGAG---CTAGCTTGCTCATGGGGAGTGGGAAAGCAGGTTAGAGACCAGTGTTAGGCTTACTCATAAGCTCAAGTTCTCAGCCAACATGCTGCAGGCACATCACTGCCCCACCTTTAATCCCAGCACGGTGTGTGTGTGTGTGTGTGGGGGGTGCATGGGGGGTGTGGGGCGgggaagatacagaggtaggtggatctctgagttcaatgccagtttagtctatattggaagttcttgggatctagggttgcataatgagaccttgtcttgaggaggaagaggaggaggtagaagaggaagggggaagaggaggaagaaaaaggaagagaaagggaagaggaggaggaagagaaagaggaaTCATTTCATTCTTTGGTCACTCTAGGTGCACGCCAGTGACCACACTTGGGTATTTTCAATATAAAAGAAACTTCTAGACGATGACGTTGGCGGACTCCCATTCCTTGTC---AGAAAGGAAAGGCAAGAACCAACCCTTTCATCTACCATCTCTTCCTCTTATTTCCATTGCTTTGCCTAGTTAAACCATCAGCTCCACCCTGCAAAGGGATGGAAGGAATTCCAGAAAAGAAAGAGCCAGTGGTAGT--------TGGAGATGGTGGCCTGTATCGTTT-------GATC---CTCTTTACTT-----GGGGACAGA------------------------------------GGATTGCT------------------------------GGGTGAGCACCAGCTGAACTGAGTGCCTGGACCCCGCCCTGCCGGCCTCTCGCCCTTTTGCTTCTTCCTTTTAGCTTCCATTTCTCCTCCCTACCTCCCCCTCCTGCCTTCCCCTTCCACACATGTGAAGTGTGCTTCTGTGCAAACCTCCTCTTTGAAAAGGTCACAACACTCCCAGCTGTGGCAAGG-AAGATGTACG-GAACACATTTGCATCTTTTCTCGGTTGTTGTCCTAATTACACATAATAAAGGTATTTAGTTCTAGAAGAATAGCTGGTGAGCCTGAACTATCATAAAA----------AGGCCCTGCCAAGAGCCATTTCCTTTATCAAGAGACAACTTGCTTACAGACAGTGGGAAGCTGTGATTCATCCTCAAACCAC-AGTGTTGCTAC----AAGAAATTTCGATTCATGGGAAGTGGCTGTTGCACAAACTTTTAAGAAATGACAATGTCCCAAGCTCTTGCCTGGTTTCTGTGACTACCACCAATGCCTTAACTA-AATGTATGGTGACAGAAAACCACCACAGCACACACCGGGACTCATTTATCAAGGAGCAGCAACCTTTGATTGCA-CAGgctgcccgtttttctaaataaaattttatctgaacacggcag---tcactgacatagctattatggctgtctttgcactccagcaat
s HiC_scaffold_1 111331403 2109 - 233722169 taacaGAATTTGAATTTGCAGAATTAATCCCTGCTTGAGAATAATTAGCTCACAGCTACTTCatataacaaagcagaacaaGCAAAAAACCAATAATGCCTTAACTGTGATATGGAGGCTTCTTTTACATAAATGGAAATTGTAGGTAGATAGTCCCAGGCTGGTCTGCTGTTT-----------ATAAACTCAGGTTTTGCTTTGGCC-------TCATCGTACATAGTTGTACAGAGCTCCCGCCTTCAAGGACACCATCTCAAGGTTGCCAGCTGCCCAGCCATCATGTCTGTATTTCAGATAG-----------AAGGCAAAGGGACAGAAGGGCACATACAAACAG--------------TCTGACCCTTCTTAACTCTTTCTGAAGGTCCAGATCCTCA--CATTTAGACTGAACAGATCTAAGTCGTAAGATCTGCTTACACTTTATGGACTGTCCCTAACTGTAAACCAGGCCAGGAAGTGTGTTCTTCTGGCAGGACAGTGCCATCAAGCACAGAGAGGGAAGCAGGAAACCTGTGCCTTTCCCAGGAAG-GCTGGGAGATGGCAGAGCTTTGGTTTGTGGCCTTTGTTTTGCCTCCTGCTCTCACGTTGTTCCTCTTTTAAGTCTACTTTCTGTAGTGTCATACAGAACCAGAGAGGCT----TGCAAGACGCCAGTTCAGATGCCTTTGGGTCCCTTTCTTGTCATGCCACCCAGTGGAACAGGCCCTTTAAAGAGTAACCCCAAGAAGAACAAAACCTGGGACAATTATCAGCGGTGCCCTCCCGCGGCCACATCGTGCAAGGCGCACTTCACCTGCACTTGCTGACTCGTTCTGCAT--CTACTTCATGCTGCAGGCACAGTGCAGCCCGGCTTGCAAA--TGAGGGCTGCGGGAGTGTCCGGCATAAGTGACTCACACGGACACCATGAGTGGGAAGCGAGGATGGAGATCTGGGTCCTTTTGTCTCCTGACCCCAAGCTCTTAACCAACATACTTTGACTAC-TCAATACAGTGTCATCACCCACA-CACAGC-----TGTAAACATTTAGA---TTCA-------------------AAGTAATTAAAGTAAAAGTAATCAAGAATTCACTTTC----CCGGTTATACTGGCCACATTTTATAGC--------CATATATGGATATCGCATTGGATAGCTAAGGCCGGA------------------------------------------------------------------------------------CATTGGACAC--------CACACAAGGTACCGCTGACAGTGCTGTTCAAGAAGAATGGGTCATTT---------------TGGGCTTCCAGTCCTCGTCCTTAATGAGGTGAGGGGACAGCCACCTTCTTTCTCTAGCCTCTTTCCCTATT-CTTCAGTTGCCTTGTCTTGTCACAC-GTCAATGATGCCAGGCAGAAGGATGGATAAAATTCTGACAAAGAAGGTACCAATAAAAGTGGTACCAATGAAAGTGGCAGCTTGTGgtatttcttctgtgatcatGCTTTTAGCTTTGGAGGGGGGTGGATAATAGGGTGGGTAAATCATGTGTTTGATAAGACCCGGGATGCTCCCCAGTATTCCTGGTGGGCTCAGCCCACAGGGTGAGCACAAGACTAGCTAAATTCCTAAATACAAATCTTCAGGCCCTTTatc-ttttaattcatttctttagCTTTGatt-ctcttctat----------------ttccattttgGCATATGCCTAATGTGTTTCAGTTTAAACCTGCTCTTTTAAAAGGTTGTAA-ACTCCCTGCTGCTTCAAAGTCAGATTTCTAAGAACACATTTGCATCTTTTCTCAGTTGCTGCCTTAATTACACATAATAAAGGTATTTCATTAAAGAAGAATAGCTGATGAGCCTGGACTATAATAAAAAACGAGAGAGAGACCTGGCAAAGAACCATTTCCTTTGTCAAGAGAGAACTTGCTCACAGACAGTGGGAAGCTGT--TTCATTCTTAGGCCACAAGAGTTCCTACGAAAAGAAAAGTTCAGTTCATTGGGAGTGGCTGCTGCGCAAAC--------ACTGACAACATCCAGAGTTCTTGGCTGTCTTCTGTAACTGCCATCAGTACCTTGATTAGAATGCAAGATAAGAGAAGATCAGCACCAGTTGCTTCCGG-----TTTAACAGAGGTCAGCAACC-TTGATAGCAGCTGACTGCCCATTTTTGTAAGTAAAATTCTATTGGAACACAGCTGTGCTCATT-ACATTTCATCTATGGTTGTTTTTATGCTTGAATGAT

a score=34529
s chr3           101318450 4702 + 160039680 [encoded data, 5543 characters]
s HiC_scaffold_1 111334154 4840 - 233722169 [encoded data, 5543 characters]

a score=80356
s chr3           101342817 3119 + 160039680 AGCGTTTGCAATTTTGAGAAGATTCTCAGTGCAGAAAAGATGATGATCCAGAGCAATCAAGTACACAGAAGAGGAGCTGGGGTTGGGGGCTGGGGAAAGACATGGGAGGAAGAAAGAGAGAAGAGAGGGGGAGAGAATGTACTGTCATTAAG---TTCTAAGGAATACTAAGCTTCAATGAT-AGCTCATTGTAGTC--TTTGCAACTCATGGGTCCTAAGGTCTC----------------TTACTTTGTCTGTTCTCCTTACCTGGCTTCTTTTAGGCCAGAGGACATAGTTTCTAGGCCTGTTCAGAGCTTcatcaccccttctgctagaaagccctctcatatcattaccatagggccaccttaaga---gctgagtgtgtatatggcccagagtcctctccccgtggttgattggtccaggtgtagacacctgatcctagttcagccaaatatatttcgtccctgggattagtcaactaggaATCTGTCAGTGT-CAAAAGTTATCGGGTACAAAATCTGCT-AGTTGTTGGCAGTTTTCTTAGAAACCTGCACCAAGAACAAT-TAAAGACAGGTGATGCAAGAGAGCCCTGGCTGAAGTCCCGTCCTCACC-CAGCTATTCCTGAGCCCTGCTACATCCCTTCCCTCCCCATGAATTGGTTATTCAACAGTCCCTTCCATGACCCAGAGATTTCTCATTATTGCCTAGATGATCTTGAGTCACTTACA-CAGAATCCTGAGTAAGGCCTGCCAACCCTTTCCGTGCATGGCCCCAGCCCCATGCCACCTACCCTCCGGCCTCCACCCTTTGTACCGCAGCCTTCTCCAGGTATGCCCACAGGACACCACCAGGCCCAGACCAGCTGGTGGCAAGGACCATCAACTCTAGTGTTAGTCTTGGTGGATGTTAATGTGTCACTGAGCACCAATGTACCAAATGGCTGTGT-CATGGCAACAGCAGAAGGGAGCCCACAGAAGCCTCATCGTTGGCACGCTGGGGCCTCCACTGGCAGATTGCTGAGACCCTGGGGGCAGAAGTTAATTTGCATAACTATTTGCAATGCACAGTTTCTTTTTTATTCACTCAAGCTAAATTAAATTCATTTTGGAATTCTCACAGT---TGCTTGTTGATGTTTCC-CATTGGGGTGAGGCCCTGGGTACATTTTCCCAAATCTAAAGCTGCTTTTGTCTCGAGTCCCCCAACACCTCAAGTCCTCAAGAGTCTCAGATATCAGGTAATACTTTCTCTCTGCACAGTTTTTGAAGATTCACGGGGTGCAGGGCAGGTGGGGGGAGATTAACTCTTTAACTGCTGGGA--------AATTTTTTATTGTTAATCTGCTGTTCTGCAAAAATAAAAATATCACTAGAACCTTGTGTCGTCCCCCCCCAGTggacaaatttacaaacatgcacatacatgtgcgcacatacaaatgaacacatgtgaatatagacacacacacatatataaagacagcatacacatgtacatacataccacacacacacacacaattacacaaatactctggcctaactgctcatGAGAGGCC-ACCTCCCACCACTTCTTCTGTAGGCAGAAATGCCGGTGTTCATA-GCTGTCACTCTGAGGAAGACAGCAGCTGTGTTATTCTATGATTTATAGAACAGATTTGCATTTTCTTGCCTTTGAAGCTTGCCCATAATCTGCCACATAAATATTTGAAAGACAGGGTGGTGGAAACAGACTTACGCAGCTTAATCGAACACTTGGCAGGTAGAATCCTAGGGCTAGGGCTCATTTCAAACACCCACATTGCCTGAGGGCCCTTAGGGTTGTATGTACAAAATTGAAATTCAATGTTTTAACCCTATCCTACAGTCAAAAGACCACTTAAAGAGAAAGCCAGAAGAGCGCCTGTTGGAAGACAACTCTTGGTCTGTGCCTGGTCTCCTAGGCCAAAACCCTGCCTTATTCCCT--GCCCTGTTCCAGGAATTGGGA----------------------GCCACTCTAGATGCCTCGTTGTGTGGTTGAGTAGGGACCTGA------CTGAGCTCTGTAGCAGACTGTCCCTGTGATGAATCAGATCTCTAGGTG-CACAGGAGACCAGGGCCCCTTCTCAGG-----AGGCAACCCCCTGGGTTTCCATACATCTGCCCTGAGCCCTTTCATAGCACAGGACACAGAGAGCACCTTTCG--CTGCCTTCA-------ATTAGGTGACCACAACCAGACTGTCATTCAGCCGATGGTAAGATCTAAGTCCTACAGTG-AAACACCCATTGAAGCTGCTTTTACCTAATTATGCGAGCCAAACATATGCACTTTTATTTTTACAGAAGTCCTATTTATATGCAATGGGGTAAGTACCAAGTGGGAAATGACACTC---ATTGATTCAATAATCATTTGTTG-GCCCTCCATCTGTACTTAAAGAGGATGCAACA------TTTGCTTTAAGACAAATCAAGACTGTCAATCACAGCCTAGGCCCCTTATCAGACGT-----GGGGAGGAGGC----------AGGAAGAAGTGTCCTGGTGTAGAAGACAATGTTAAGATTCAGAA---GTGAGGGAGGCAATGCCACCctgagacc-----caggtgacttagt-----ccatcccactttgaattctgag--tccaggacctcatgtaactaggtcacctttct-ggcctctattttctcatttgcaaaa---taaggttggcttaacgaccaccacgcccctcttgtgttgatttcctCAGCGACTTGGGTAGAGAGGCAGGATTCAGACGTAGCTGGGTGGTGCAGCAATGCC---TTCCAGC-CCATCCCCCACCTCTACCTG--TGTTCAGAATT------GGGACGAGCCC----------------------------------AGAGAGGAGAGAAGTAGGGAGACTGGTGACAGAAGCCAAACTGGGACCCTCT-TGAGAAAGCTCAA-----------------CTTTATGACCCC------------------------------------------------------TACTATCACCAGCCACCCTGGAAGTAACCCGTCCAAACTCCTCA--CCCTGAGTGACAAACAATCCTGCCCTCGGGTTCCAGACAT----TCTGTCATGTTGAGGGCTGGAGCTCTTCAGTTCTGTAGACTTTCACACA-----CCAAGAGCCAAAGGCCAGGAAGGCC-AGCTGTGTGCAGTTGTGAGAAGGATATCTTC--AGGGCTCACAGAAAAGAGGACACAGAGGACTGG-------GCCACACTAGCATGTTGGTGACCT--------GAAGCACAGGAGAGGGTCTTAGACTGAT
s HiC_scaffold_1 111348090 3162 - 233722169 AGAGCTTGCAATCTTGAGTAGATTCTCAGTGTAGAGAAGAGAAGGACCTAGAACAACCAAGGAGA-AAAAGAGACgtc----------------------------------aaaaaaagaagagagccAGA-AGAATTCAGTGTCACTAAGGAATCCTGTGGAATCCTGGCTTTCAAGAGCGAGCCCAGTGAATTCAATATGTAACTCATTTGCCACAACATCTCCCCCAGCCCATCTTCATTGCTATATTTGCACtctttttctaattctatttATATTGTCATAGATGGACACTAAAT-TATCTAAAACATTCCCAGATCTTTTGTTAGAAATCCCTCT--TATCACCA--ATAAGACTACCTTAAGAAATGCCATGTTTTTATATgaccctttctcttctctctaccGTTCATTGATTGAGGCATAGACACCTGATCCAAACTGAACAAAATATAGCACTTCCCAGGGATTATTCAG--AATAATGCCCCATAGCACAAAAATTGTCAGGTGCAAAATCTATGGAGTTGTTGGCAACTATGTTAGAAACCAACACAGAGAAAAATCTAAAGACAGGTGACAAAAGAGAGCACTGGC-ATATTCCAGTCCTGGTCTCAGCTGTTCCCAAGCCCAGCCATATCCCTTTCCTTTCCATGACTTGGCTATTCAACCCTTCTCTCCGTGACCCGGAAAATTTCCCCTATTGCCTAAGT----TTGAGTCACTTACAGCAGAATCCTGACTAATACCTGGCGAATCTTTCCTAGCACAGTTCCTCATTTGTACTCTCTTCCCCTGAACACCCTTGTCTTGTTGAGT-------CCCAGGTATTTCCACAAGATGATGCCAGGCCAAAAGCAGCTGGTGGCAAGGACCA-CAAATCCAGCGCTGGTCTTGGTGGATGCTAATGTGTCACCAAACACCGGTATACCAAACCCAAGTGTTCATGGCAATAGCC-AAGGGAGCTGGCA-AAGTCTCATCTTTGGCAT-CTGAGGCCTCTATTGGCACGTCATTGAAGACCCTGGGGCAGAACTTAATTTGCATAATTATTTGCaatgcaaaatttattttttattcatgtatgctaaattaaattcattttgaagttctggaagtctttgCTTGTTGACATTTCTGCCCTTACTTCACATTTCAGGTACATTTTTGGCAAAATGA---------------GAGTCATAAGAAACT---AGTTCCAAAATGCCTCAGACCTCAGGTGAGGTTTAATCTCTCCACAGTTCTTTAAAATTAGCAAGA-----------------AAAATGAACTCTTAAACTTCTGggacaataaaaaatacataaaataaaatactctgtTCTGCAAAAGTGTAAATACTGTTAGAACTTCCCATACCCTCCCCC--------------------------------------acctccaa---------------------cacacacacacacaca----------------------------cacacacacacacacca---------------gccctAACCACACACAAGAAACCCACCTTCCACCAACCCTTCTGCAGACAGAAATGCTGGCATTCGTAAGCTGTCACTCCAAGGAAGACAGCAGCTGTGTTATTCTATGATTTATAGAGCAGATTTGCATTTTCTTGCCTTTGAAGCTTGCCTATAATCTGCcacataaatatttgaaagacaGGATGGTGGAAACCGACCTAAGCAGCTTAATCGAACACTTGGCAGGTAAAGGACTTGGACTGGTGTTCATTTCAAACACCCCTATTGCCCCCAGGCCTCTCAGG--GTatgtacaaaattaaaattcagtgttTAAACCCAGTCTTGCAGTCAAAATTCCACTGGAAGGAAAAGCCAGCAGAATGCCTGGTGGAAGACAGGTTTTGTTTCATGTCTGGTCCCTTGGGCTGAGAGCCTGGCTGGTTTCTTTCACTCTGCTGTAGGAGGTGGGGCACAGATAGCACAAGCATCTCCTCTACTCCAGATACC-CTTGATGTGCTCCCAGGGTGACTTGAGCATCGCCCTGCTCCATAGCAGCCTGTTTCTGAGACTAAACAGAGCTTGGTCTGTCCCAGGGAACCGGGAGGCCCTGCCAGGCCAGCAGAGAAGCCTTGAGTTTTCTGTGCATC--CCAAATACTGCTTCCTTACTTGTGGTGCAGAGAGCACTTTCTGGACTCCTCTTAGGTTCATAGTGGGTGACCATAATCACAGGGCTCTTTGGCTGAAGATAAGCTCTAAGTGCTACAGTGAAAATGCCCATCTAACCTGGTTGAATATAATTATCGGGGGAGaaaatatacacttttatttttacagtggtCTTATTGATACACTGTAGAATAAAT----AGTGAGAAACTATGCTCTAATCTGATTCAATACATATGTGTCACTCTCCCTATGTGTGCTCAAGGAGGGAGCAACAAAGTCGTCCTTACCAAGGTAAACCAAGAATACCAAGCTC-TTTTTGACTCCTTATCAGACTTCATTCAGGAAGGAGGTAGacaaaaagaggagaaggagccCTAATCCACGAGACCTTTCAAACACTTGGAAAAGGCAAGAGCAGAAGGTACAAACCCAGACCCCAGTCAAGGGACATGGTTAGCCCCGCCCTGCCATGGATTCTGAGGACCTTGTCCTTGGTACAGCTAGTTCATCTCCCTGGGCCTCTGGTTTCTCCTCCACAGAAGGGCACAGCTGAC-TGATGACTCCCAGACTCT-----CGGTGAATTGTACAGCAGGCTGGGTC-AGAGCCTAGACTCAGATTTGTTTG------------ATGCCCTTTTCCAACTCCTTCCCACAGGACTACCTGAATTTCCAGAGCCACACAGGCAAAGAGCCCCACGGGAACTTCTGGTGCCTGTAGAACTTAGGAGAGAGATGAAGGAGGCAGGGAGGCTGGTGACAAAGTCCAAATGCAGAGCCTCTAGGAGACAGCCTTAAAAAGGGGGGGAGGGGGCTTTGTAGACACAGaggcacagctgcagagcagaagAAGCAGTGGCTCAGACCTAAAGTGTGGCTGTGCTGCAACCTGTGATCCTGGCGGC--CCCGCACCAACCTCCCAGGCCCTGGATGCCAAATAACCCTGCCA-CTGGTCCCTGAAATATTGTCTGTCACCTGGGGATTGGGAGTTGCTCTCTTTCCTAGACTCCCAAACAGATTGCCAAGAGCAAAGGTACAGGAAGACAGAGCAATCTGCTGGTGTGAG-----TGCTCTCCAAGGACCTCCAGGGAAACAGAATTAGGGGATGAGACACCCTGCAACATAAGTAGATTGGTGTCTTAGGGAAGAGACGCA-AGGAGAGGG-----GActgat

a score=68375
s chr3           101349160 2766 + 160039680 AGTAAGCAGGACCTCTTT--------------tgagcaaggatctgcgagaggtgacttcatatacgtttcccccg-gtaattcttactatgtgcatagaagatgaataagctcac-tcctgtttacaatatgaaagccaaggctgtaagtaccaagggactgactgcatcacacactgaaagtggcagagctgggctttgaatacccactgtcttctggctggggagcccata-tcgttccCTCACCTCAGTAGGAGTATATCA-------ATGTGTAGGAAACACAAAT----AGATTGACCCAGTGACTGACAGGTGAGAGAGAACACACCTCGTTGGGAA-------------------CAG-CAGGCAGGA----------------GGGGAACATGTTCAGGTGAGTGGGTGC---AGGGCAGGGGCAGAGAAGAGAGAACGCAGGC--CATACTGAAA-----CATCAGTGTC------------TTCTAA-TTGAATGGCCAGGCTTAGGGGTCCCCATCTCCCAAGCTTTCTCGTTTAAATCACCCTTGAAGCTAAATATTATCCTAACAATTTGCCAGCCCACAAATTTTTGTTAAACCTACTTGCCACAAATATTATCCAGATGGCAAAATAGATAAAAACCCATCAGCAGTTACAACTAGCCTCCTTGAAAAGATAGCAGGCC--AGGTGCCCGCAGGGACTCT-CTTTGAGAAACCTGCCTTAAATTACAAAGTAGCAGATGAAACAAATGTTGGTTTGGGGCACCATGTGCCCCACCCCCAAAGCAGGTGCCCCAGATCTTCACATAC-----CCTTGGCTTGCAAGCTCCCCTTTCTGTGAA--CGGGGAGGAGGCATGCAAGACACCC-TCATCATAATAAAATAAGGGGCCCAGCTAATTTCCTGAGGCTTCTGTCCCAGCAGGGAAGGATATGATATTGCAAGCCAGCAGAAGCCAG--GAGTGGCGATGCTGTGGTTCTGTTTTACATTACATTAAATGTTACTATTTCTGCAGGGAATATCTGTGGAGCACTGGCGTAACCCATGGCAACCAGCTAATAAATTGTAACTTACACTGGCTCAGCTTATTGTAGGGGTGGAGAGCAGCACGTGGGAGGAGGACCTCCAAAAAAGG-CAAATGCTAGCAACAACAACAA------CAAAA--GACATAGTTTTC---TCTCTCTCTCCTacacacacacacacacacacacacacacacacatacacacacacacacaAATATAGGTTG--TTAGCATTCTGTAGCAGAATTAACTTAAGGTGAAGGGGGACAATTAGCAGACATGGTTTTAGAAATCCTGACCTCTTTGTTGCCCCTTATATAGGATGTCTCTTTTAAAAACCCAGTAGGTATACTTTAAGTGTTTCTGACTTTGGGCCC-----------AGAGTGCCCCCTCAGCATCATTTCAGAACCTCTATTGATGGTGACAGGGCTCAGCATCCAG-CTGCACGAGACACTGAGCAGTTTGGCTCACCTTTTCC-CTCTGTCTGCAAATAGCTCACACCTAATTGCCCCTGTATTTCAAATTCACAGCAGGCTCCAAGTCTCGCTCTTGGCTACACTGAGCCTACACTTTGGCCTCAACCCCAATAGATTCCTCCCTTCCATTAGCTCCCCGTGCCCTGAACT-----GTCTTTCACAAGGGCAGTCAGCACCTCTGAAACCTGGACATTGGATTTTTGCTTATGGGGAAATTATTCATGGGGCACCCCGTGGCC-TCAGACAGACCACTCATCTGTTTGGGCTGATTAACTGGAGGCACCCGCTCCTTGTCCAGGTGAGCCATACAGAACTTAATGAAGTGGCCCTCCATCTCT---------CCCTCCGAGCCCTGG-----CTGCCCAGT--------------GATGTCACTAGGCACCTTCCTTTTGTCCTGCCATCTCTGCTCTGTGTATGGACGTGGACTGCCGGGAAAGGAGCTCAGCTCCCA----CAGGGAC-----------TTCACATGCACATCCCCCTGAGACACCATAGTGTGCAAACAACAAAG------------AGAGTTGGAGCCAACTGCCACGCT-GACACATATAAGCTAAGTGTCATGGGGGGGGGGGGTCATTTTACTTCAGGGACCTTGATTCCCATGCCTGCCATGTTAGGATGCC-----CACCAGGTAGGAG--AATTAGCTGCAGGTACCAG---ACCCCAGTGT------ACAGGGCTTTAGAAAGGAGAGAGTTGCTTTTACTGTTCCCGTGGCTCTGCATTGCCTGCATGCGTGGGAGCGTGGATGCGTGTGTGTCCTCTTTATTCATttttggtttttgagacaaggtttccctctgtagagcccttgctgtcccagagaactcatcatgtagagcaggctgacctcaaagattctcttgcttctgctttcccagtgctgggattaaaggcgtgcgctaccacacacagcGTATGATTATCCTCTAGATTAGTTCTCT---TCCCCAGGATCTCCACACCAAGACCTTCTCCACTGGCATACC--TGCTGAGGTTTGGGAAGGGACCTGGACCGGTGTCTTCACCAG-------TGACCCATCCCAGGTC--AGGACCCCTGCAGCTAACCCAGTGCCTCCTAGGTGCTCAGGATTGAACCGGTGACAGAGTGAATGAATGAATGCTCTGAATGGGCTCAC-TCCTAGGCAAGGAAGAGAAAATTAGAGggagatcaa-agctgcagtatgtgtgaagatgctgtataaactgtaaaatggtatg-aaaactttaggaaatgttatGAGTTTTAATTATTACCTTTGCAAATCTTCACGCCAGGAGGAGCAGCCCCTTGGATGCTGGG-CAAGCTCTGCCAATTTCATTCC----ATTGGGGTGTTGAA-GGGATAAGGGAAGAAAGGGGCTTTCCCTAAAAAGGTGGCTGATGTTT
s HiC_scaffold_1 111355053 2673 - 233722169 AGCAAAAAGGACCACTTCCAAAATCCCAACTGTGAACAAGACATTGTACTAAGTGTCT-CACGTTCATTTCTCCTTTGTAACCCTTGCAAGATGCATGCCAGAGAAATA--CTCACCTCCCACTTGTAATATGGAAGCTGAGGCTCCAAA-------------------------------------------GGGCTTTGAGCCCATACAGCCT---GGTCCAAGAGCCCATACTTCATCCGTAACCGCAGGACTCCTACACAGCTGGATTGTGTTTGAGAGGCACATACTTGCAGACTGACCCGGTGACCCACCTGTAAAAGTCAGTGCACTTCCATGGGCAGGAGGGAGAAGATAGTGGGCAGACAGGCAGGACAAGGTACATTCTGGGAGGGGTCATGGTAAGGTTAGTGGGTGATGAAGATGGTgggcagaaaagaaagaacaccGGAGACAAGCTGAAAACAGCCATCTCCGCCCCACTATGCTGATTCTAAATTGAATGTCTACCCTCAGGG-TCCCCATCCCCTaacctttgctttttaaatcacCTTTGCAGTTAACTAGCATCCTAAAAATATATCAGCCC-CAAAATTGTGTTAA-CCTACCTGCCACTAATATTATTTAgatggtaaaataaataaaaacc-atagGCAGCGAAGACTAGCCTCCCAGAAAGGGTAACTGGTCTCAGGC-CCCACAGAGCCTTGACTTTGAGAAGACTGCCTTAAATAATGAACTGACAGATGAAACAA-------------GCAGCCAGTGTCC-------------AGGACCCCAGA-----ACATGCAGGCACCCTGGTTTGCAAGCTCTTTTTCTCATGAAACTGGGGGGATGGCA-----GACACCCATCATCATAATAAAATAACGGAACCAGCTAATTTCCCGAGGCTTCAATCTCAGCAGGGAAGGATATAATATTGCAAGCCAGCAGAAGCCAACCAAGTGGTGGTACAGTAGTTCTGTTTTACATTACATTAAATGTTACTATTTCTGAAGGGAATATCTGTGGAGTGCTGGTGTAACCCATAGCAACCAGCTAATAAATTGTAACTTACACTGGCTCAGCTTATTGTAGGGGTGGAGAATAGCAAGGAAAGGGGGGA-----AGAAAAGAccgaaggaaaaaaaaaaaggcaaacctgGCAAAAGTGTCACATTTTGCCCATCTCAttaccttacacacacacacacacacacacacacacacacacac-------cctgcaaaTATAAGCTGTATCAGCATTCTCTAGCAAAATT-ACTTACGCTGAACTAGAACAATTAGCAGTCAAGGTTTTAGAATTGTTGACATTTGTGTTGATCTATATACATGACGTGTCCTTTAGAACCCTGAT-GGTGTACTTTAAATGTCCCCATCTCCGGGCACCCCCTCTTCTGAGGGTG-CACCTCGATATCACTTCCCAGCCTCTATTGAGAGTGATGGTACTCAACCTCCAGCCCGCACATCGCATTCAGCCTTGCAGCTCACCTTTTTCGTTCTGTCTGCAAACAGCTCATGCTTAACTGCCCCCATATTTCAAATTCACAGCAGGCTGGCCAGCTCACTCTTTGTTACACTGAGCCTACTGTTTGGCCTCGACCCCGAAAGATTCCTCGCATCCATTAACT-CCTATTTCCTGAGCCACTCAGTCTCTGACACAGTCAGCCAGTCCCTCTGAAACCTGGACTTTGGATGGGCGTTAAATGG--AATTATTCATGGGGCACTTGGTGGCCTTCAGACAGA-GGCTTATCTGTTTGGGCTGACTTTCTGTGCACA-TCACCATCTGTCCATGTGAGTGGTACTGAACTTAATGAAATTGCTTTGTGTCCTGAAATGCCTATACTCAGCCCCCTGGGGGAAGTGACCAGTATTTGAGGCATCTAAATGCCACTGGGCATCTTTCTTCTG---------CCTAGCTCTGTGTATAGAAGAGGAGAACCCAGGAGTGCTCCCAGGCTCTGATGTTGGGGGCACTCCTGTCTTTTCACATAGA----------AAGTAGCAGGTCATGCAGAGAACAATGGACTTGTAATCAAGACCTAAGATCAACAGCCACCTTGGACACTGACTAGGTAAGCATCAT---ATGGCAAAATCATTTTGCCTCTGGAGTCTCAATTCCCTTACCTATAATGTGAAGACATTGAAGGTACCAGTTAGGATGCATTTGGCTGCAGGTAATGGAAAACTCTTGTTTTAAAactcaatgttttaaaaaggaagaaagagcttTT----TTCTCATGGC-------------------------------------------------------------------AGA-----------------------------------------------GTAGGGCAGGCTG------GAGGCTCAATTTCTTCT-------------------------------CTAC-------------------TCTTCCCAGTTAACTTTCTTCATCCCCACATTCTCTGCACCAGAACTTTGCCCCGCAGTATCACGGTGCACAGCTCT-GGAGGAGTTTCGTGTTGGGCTTCTCACCTGTCTCTGATGCCCCTACACAACTCTGAAGGCCTCTGCTTCTTGCCCAGGGCTGGCATGTTG-TCAGA--CACATGGATGGCTGAGTGAGTGAAGGATTGC---AAACAGGGTCACTTCTTACACAATGCAGTGAAGATT-GAGGAAAATCAAGAGCTGCAGTCTGTGTGAACATGCTCCATGACGTGTGAAGTGGTACACAAGGCATTGGGAACTGTTATGATTATAAATTACCAC---GGCCAGTCTTCATCTCA-CAGAAGCAGCCTGTTGGAAGATGGGATGAGCCCTAAAGCGTCCCTCCCCATTAGTGGAATTTTCAGTGGGACAGTGGAAGAAAAG---TTTTCCAGGAAAAGTAGGtaactttt

a score=15201
s chr3           101354225 697 + 160039680 TTCTCACTTTTCATCACCACATGACTATCTTTAGACTTTGCTGTTAGGTCAAGTAGAAACCCAGGGCTATATAT-----CACATGAATTTTTGAGGCTGCATCATCTTCC-----AGGTT---------CCTGCTGTGTATTTCTA-GGTGtctccttgcttctgcctccccttctgcttcctcctc---------------------------------cactcca---------------cctccttacct-tctattctcctttct-tcttttctgtccccAATGTCTTTCCACCACTGATCTCCAATGCT-------TTTAAACGACCTTGGTTCCTGCCCTTCAGCTGCATTTATCCTAGATAAGACTTGCTTTGAGCAGAAGCTGATCTCATAGGCAACCTATTC-ACCA-CACACAG-----------ACCCCTGAAGCATAAGCAC---AGGTCAGATAGACTAACTGAAAT----CCTTAGT-TATCCAGTCCCAGGCCACAGAGGGAACTGGCCTGTAAG----------AAAGGAGGGGCTCTGGGTTGT---------GGCCTGGCTCTGGCTGATAAAATGTAGATCAGGCCCAGTCCAGAATGCCAGGCCATCTGGC--AGTTTCTAGACAGCAGGTCCTTGCTGCTTCCAGTCCCCAGGGCCAGAAGTGGGCAGCCTGTCCCAGCAGCCATTGGCAAGGAGCCCTTTGCCCTGTGGACAACCAGTCTTGGCCAAGCTTGAG-TCTCAGCCATGTGTATCTGTGGGTACCGCTGTGG--------CATCTTGTTGATTTGATCCTCAGCCT
s HiC_scaffold_1 111358824 785 - 233722169 TTCTCAATGTTGATGGATGGGCAACTGACTTTAAACTTTA--GCTAGTCTGGG---GGACCCAGGGAAATACATAAGAACAAGCATATTTGTGAGGATGTATCTTTCTTTCAAAAAGGTGAACAGTCAACCTGCCATGTATGCCTGCTgtgtctccttcctttcccatcctattctccctcctcctcttccctttctttttccttccatctCTCTGTTCTCACCCCAaaccctctcccttctcctccatACTTCTCTACcctcctttccattttttctgcattttttgt--tCCCACTGGTAAACTCAAATGCCCTGAGCATTTAAATGACCCTGATTT-TGCTCTCCAGCCCTGCATATCCTAGATAAGACTTCCTCTGAGCAGAAAGC-------CAGGCCTTCTCTTCTACCATCACACAGGTAACATAGGCACACTGGAGGcatgaataagaaaggaaagacagataA---GAAATTAACCCTTAGTGTATAAAATTC------ACACTGGGAGCAGTATTTCAGGCAGTTTTGACAGGGGAGGGGCTCTGGGTTATAAGAGGCTTGGTCTGGCCCTGTCTGATAAAACGCAGATCAGGCCAAGTCCAGAATGTTAGACCATCTGGCAGAGTTTCTAGATGGCAGGTCC-TGCTGCTTCCCGTCCCTGGGGCCAGGCAGGAGCAGCCCAT-CGACCAGTCACTGGCAAAG-GCCCTCAGCTCCGTG-------AGTGCTGGTTCAGACTGTGCTCACCTCCAGATGCAT------GGACCTCTGTGGGATTTGGTCATGTTGTGAATTCTTTCCTCAACTT

a score=60100
s chr3           101355670 3006 + 160039680 TGTGGTGGGTTTTGCACAAAGCTGCATTTTAAAGGACAATTAAAGGACAGCTCTTTTTC-CCTAAGTAATGTCCTTTAATATTTTGTTTCTCTTTTTGGCAGTGCTGAGCTATAAGTGATGGGAGAGCTGTTTTGGTGTAACCTCTTGCAGAAGGTCCCAACAGACCAGGCTAAAAATAAAAACC-AGTCGTTTAAAATGAAGTTCCGCGTCACCAAAGTGAGACTAAGCTGTTTATCTGACCTTGTCAGGAATCAGGGCGACAGAGATGATAGCT---TGC----AAACAGCCAGGTTCAGGCAGCAGAATAATGAAGGCTACTGTGCCCTAATCCGAAAAACCCCCTTACCTCCAAAGTA-CCTGAAGTTAAGGAGTCCCTTATTTTTCTGTTGCTTTGTCTCTCATCCCTGCCTTACATGGCCAG-GGCTTTGGAACAGCCCATCTGCCTTCTGTGCTTTGTTTCTGCTTTCTCCTGCCTTTTCTTTCTAGGAAACCGAGCTC----ATCCGCCCAGTCC--CTTGGAACACAG--TCTACTCTGTGCAGCAAAG--GTGCCTGAAACTAGAATCACAAA----GCAAAGAGAAGGCTTTCGATTTGCTTCG-ATTTTGTCCTCTGACAAAGTAAGAATGCCCTTTCTCCTCTAAAATTGTGACCCTAGCAGATGGCCATTTGAGGAAATGGTCCACAAAATGGCAAAAATTGATAACCCTGAGTTGGCCCTGACCACCCTTCC-CCCAACTCCACGGACAATGGGCTGGTCTGTGTAATC--AGTGA--GAGAAACACTGGCTTACATAGACAAGTCTTCTGACTCGTCCTCTCATCTAATTCCAGCCCCTTGACTCCTCAGGTCCCAGTATTTCTCCCTCTAGAGTACAGCACTCCCTTTCTGGGATTCCACAGTCACTGTTGGGGACAGAACCCATGTGAGTAAGCGCTCTCTTACTGAGCCATGGTGCTCTTTTCAGAGtttgtttgttttgaagcaaagactcaccaaattgcccaggctagctttgaaccccagttagcccaggcagtcactcaagcttacactctgccctcaatgcggatcataggcctatgccaccagactgggctCTTCCCAC---CATCTTCTGGAAGTCAGGACTGGTTCCAGACTGCTTT-------CTgtgtttggctcggttcctggcacacggtaactgctcaatcaatCAATCTCCAAGTGAATATATAAATATATTaattcccagaaaaattaagttaatggatagaatttcttctgcttttagtgttctttcttactacatttttattaaatcttt-ggcacctgctattacttgtccactggccag---------atgacaaggagaattagcaagtagcaaatgaatattaatgggaccagacccaacccacagtgctcagattgacagattgtttttttgttttttttgtttttacaaacaggtgtttgggcttatggttgtggttttatattgcCTGCTAGTGTCTGtaaatttaattaaatttaacatttttaaGCAACTTAAGCATGAAGGtgctaaatatataattttgtgctaattcataggctgcaactt--gacttgaatctatcagtatttcacagtgctctgtaa-gggcagtgtaactgattggac-aggcttgtggtatgaaaacacttgagc-------------------------------aagttGGGATGGGAGATGCATTCTGGTT-GGATGGGGA------ACCACAG--GGC----TATGTGGAGCTGGAGCCGGTAAGATACAGAGAAAAAGGGCAGGAGGGGTTTATCCGAGTTGAATTCTCAACTCCCCGCCCCACCCCACCCAAACCCCTTGCTCCTCCCACTGCTTGGGTCTAAA-ATGTAATTCTATTGTGTTTACCCTTATTGAGGCTTTAGGTGTGTCTATCGTCCACATCTGTGGATTCTGAGGGTGTGGTTAATGTCTAAAACAATTATTTATTATTGGATGACAAAGAAGCAACTCCCCTTCCCCTTCTA-------------CCATGCTCAGCTTCTATTCCTTCTCCAAAAAAAAAAAAAAAAAATccagccagagctacatagtaagatcctgtctcaaaaatcaaaacaacaaaaGTCTTTTGCAGCCACCGTTTCCAATCTAAACCACGCTTTGACTTCTTGGTGTAGT---TTTGAAGGCCTCTCCAATCCTGGGCCTCGGCAGCTCTGGGCCATTATCTCCATGGCTTCTTCATACCG-----AGGCTGTCAGTCGGCCAAGCTGGGCTGAGCACTTGATTTTCCAGAGCACCCAGAAATTGTT--CCTTCAT-TTGTTGTTACCATGTCTTAGTTTCTAGGGATCCCCCGTTCCCTTGATGAACACTAC------CCCACAG----------------CTTCTTTGACATCTCAAATCTCTTTCAAGGTCCCTAACATTTTCTGCTTTTT-------CAGTTTCTACATTTTGTTATCCCAACTCT---------GTGC---TACACACTTCTG-TATAGAATAATCATGGTAAGG-AGGTTTACTCATCTGGGTCTAG-ACTGTGTCTGGCATGTTGCTCCGATTTTGTTCAT-----ACCAAATTCAATTTCTGTCCTCAATGATGCTAGACTGGATTCTGCATTTGTCTTACCAACGTCC----TGTATCTTGATTCTTCCCGTTGCAAATCACACATCAGTCAATACAAAAGGGCATTGTCAGTGAGAAAAATATGTAACCGTATCATATAAAAAATGTAACATATAAAGAGATCTGGAGGGAGGGAGGCTCCAGAATTGCCCCTGATGTTCAACAGCATCATTAAAGCCTG------CCAGGCTATTGGCCAGCC-------TTGGTCACACTATAGTTGCTGCAAGCCCTATTTCTGTTTGTAC--ACAGCAGTGAAAAACAAAG--AAGCCAGTACTTCTAGGACAATCTTTTT------------atctttaccaagaatgagccaggagacttct---gtgttattgatcagaattgcaatgcatgc------------------ctggctcaggaactagaattcttttgattgactcacattagtcaagatcaacagctttggtcaggaaaaaaaaaagattagatttgcctaagcccatgtccatcacgagtctgaaaaagatgaggct
s HiC_scaffold_1 111360843 2800 - 233722169 TGCAATATGTTCATCACAAATCTACATTTGTAC---CAATTAAAGAGAAATTCTTTTTTATCTAAATT-TATCTATCTAGGTTTT--TCCTTTTCTAGAGAAGGCCA--------------------TTGTTTTGAACTAGGTTCCTACATCAG-CCCAAACACACCAGGCTAGAAATAAACATGGAGGCACTTGGACTAAACTTTCAGGgcagcaaaacaaaactaagctGTTTATCTAACCTTCTCAGAAATTAGGA-GAAAGAGATAATAACCAAATGTCCTAAAATGGCCAGTTTCAGTCAACATGATAATAAAG-CTTCTCTGCTTTAATCCTTAA----CCCATAA----AAAGTGGCCTGAAGTTAGCCAATca---gtttttctcttgttttgtctct--gtcatgccctacaagaaaagTAACTCTGAAACAGCCAATCTACATTTTGTTCTTTGCATCTGTTTCCCTCCAGCCTTCCTTTCTATAAAACCAAATTCTTTTCTCTGCTCAGCCCACTTTGAAACACTACTTCTATTTTATGGAAGGAAGCGTTGCCTGATCCTAGAATTACAAATAATGCCAATTAAGATCTTTAAATGTA--TCGTAGTTTGTCTTTGGACAATTCTAAAACGCCCTTTCTTCTGTAACATTATAG---TGGCGAATGATCATTTGAATGAAT-----------------------CTTATTTCATGTCGGTCCTGACCACCTTCCCACCCCAGTCCACAGACAGAGCCTTGGTCTGGGGAGTCCCACTCGCTGAGGAGTGCTGGCTTAGAGA-------------ACCTGTGCT------TAGTTTCA--------------------------------------------AGCTCTGCCTCCCAGGGACTC------------------------------------ACGCTCTCT------------------------GAGACTCTCTGTCCCTGGGC-----------------TCCAGGCTG-----------CAGT--GCTTCCGCAGTAACACA------------GCCCTCACTTCCCGTGACCTACCTACCTTATCTCCTCTGTCTCCCCTCCTGGATGTCTTCTGGAAGTGAGGGGTG--------CAGCTTTTCATCGTCTCTGCTtggcacaatgcctggcacaaGA-AACTGCTCAATCAATCTCTGttgta-tgaaaa-agaaatatattaattcccagaaaaattaagtTAATGGGCAGAATTTcctcagctttta---ttttttttctctgtgattttattagATCTTTTGGCACCTGTTATAGCTCGTCCACTGGCCAGTGCTAGCAGATGACAGGAAGAATTAGCAAGTAGCAAATGCATATTAATGGAATCAGACAGAGCTGACAGTGCTTAGTTTGACAGATTGTTTTTTC--------------TATGGACAGGTGTTTGGGCTTATGGTTGTGGTTCTATATTGTGTGCCAGTGtctataaatttaattaaatttaacattttaaagcaaCTTAAGCATAGAAGcactaaatatataattttgtgctaATTCATAAGC-ACTATTTCAGATTTAAAtctattgatttttcatggtattCTGCAAAGGGTACCATCACTGACTGAAAGAGTCCCATGATGTGAA--TGTTTGAACCTAGAAAATATAGAACCACTATCCTGGCACAAATTTGGGTTGGGGGGCAGGATTTAATTAGGATGGAGGCTCTCTGCCATAGCAGGCATCTTACAAGAAGCCTg----gataatatattta---aaagggctggagaatTTTGTATGA------------------------ACCCCAGGCAGATTTCTCACCCTT---GTTGATTGGGTCTGAGGATGTAATTTTCTCTTGTTTGTA-TTACTGAGG-TCTAGGTGTATCTGTATGAGACACCTGTGTATACTTTGGGTGTGGTAAATGTCTAAAACAATTAGTTATTGTTGGATGAAAAAGAATTGCCTGCCATTCCCCTGTCAAATCTGAATGTTCTCACACTCAGCTTTGAT-----------------------------------------CATATTA----CTTGCCT-----ATTAGAAC----AAAGTCTCCAGGGGTCACCATTTCCGACTTAA---------------CCTAGCCTAGTCTGTCTGTAAACCTCTCAAACTCTTGCCTCTAA-----------CATTATTTCTACCACTCCT--ATGCTGCATGCAGTCTGTAAGCCTGCCAAACTGAATTTACCACCTGAATTTCCAAACCAGTC--CATTTGCTAACCTCTATGTTATTATGACTATTGTCTCCTTCCTAGA----TCCTGCTTCTTTGATTAACACTACCCGTTTCCCACGGTAGATGTCATAactatcttctttgatttcttgtatCTCTTTCTAGGCACTTAACATATTCTGCTTTGCAGAATAGTAATTTCTATATTTGATTCTCCACAGTCCACAATagagatgcatatatatatatttgctataaACTATTCATGGTAAGGCAGTTTTATTGATCTGCATCTAATACTGTGCCAGACACAaagttctcattttttctatatgACACTGAATTGAATTTGTGTCCTCAAGAATGCTAAGctgaattttgcatttattttgctgattttttgtgtgtatcaCAATTATTCCAGTTGCAAGTCACAAATGAATCAACACAAAAGGGCATAGTTGATGAGAAAAATACATAACAATACTCCAT------------ATATGGAGAAGCCTGGAGGTTGGGTGGCTGTGGCATCACATCCCAGCTCTGGAGGCATTGCTGAGGACTGTCTTCTTCAGTCTGTGGGTCAGGCTTTAATGTTTGGCACACTGTGACTGA-GCAGATCTAGAtcctacacacacatacagaaccAGGGAACAAAGAAAAACTGGTCTTAACATGATTCtctttttatcataaaataaatcttcactaAGAGATTACCATCCGATCTCTCACGTGCTGTTGGGCAGAGCTGGGA-ACATGCCTGTGGCTAAAACAATCACTGGTAAAGAAAGTAGAATCCTCTTGATGGGCTCACACGAATCAAAAC-----------------------------TCAAATTTCCCTAAGTTCATAATTACCTTTTATCTGAACAAAACTGGGCT

a score=5599
s chr3           101355825 155 + 160039680 CCCAACAGACCAGGCTAAAAATAAAAACCAGTCGTTTAAAATGAAGTTCCGCGTCACCAAAGTGAGACTAAGCTGTTTATCTGACCTTGTCAGGAATCAGGGCGACAGAGATGAT--AGCTTGCAAACAGCCAGGTTCAGGCAGCAGAATAATGAAG
s HiC_scaffold_1  73608902 149 - 233722169 CCAAACAGACCAAACCAAAA--------CAGTCATTTATGCTAAAGTTCCCTATCACCAAGATAAGACTGAGTTGTTTATCTGACCTTCTTAAAAAATCATGAGACAAGAATGACCAAATATCTAAACAAACCAGTTTGGCCAGCATAACAAGGAAG

a score=43687
s chr3           101365753 2239 + 160039680 CTGTTACTATAAGTCAGCAGCTATGAAAGAAAAGGAAGAAGAAAAAAGGGAGGGGGTGGGCACAACATACATTCATACAGAACTCAGAAGAGGAAAAGATGGAGAAGCTGTTTGAAGGGATGATGTCTTAGGGTCATACGGGTCCTAGTGTACAGTTGAGAAAAAAAAAAGCCACTTGGCAAACAGGGAAGGAACCCTGGTCCCTGCTCTCGTCCTCGTCCTCTGCTTACGGGGCTGCACACATGTCCTGGCATTGTGTTCTTCCTCATTTTCTCCTGGTGACAATGGCCAGCCTCCCAGACAGAGCAAGCG-----------------------------------TTCATCAAGCAGCAGCTGTTGAACCTTTGGCACAAATCTCCCCTTGTCCACTCCTCGCCCCAGTGACTCCACTCTCTGTCCTCCATGGCAGGCCTCGGGCAAGATGGGGCTTCATTCAAAATAGCAGGCCTCATTTGTGGTGGAAACCACAAGTGTTTGTGAACCCCTCCACCACG-AAGCTAAAATGGCTCTGAGGTAGGTGAGGATGAAAGGAAGGC-CGGCTCGCCTGAC---TGGTGGTCAGGGG-AGGCTAGGGGAGTTACTGAGGAATTTCACAAGGCAGCCATGGCTGTAGTAAAGGGTATTTTGGCCCTGCTGTTGATcacacacacacacacacacacacacacacacacacacacacacacacacCAAGTGTGTGTGGGgagagagagagagagagagagagagagagagagagaCTCACTCACATGTGAAGGAAAAAAATGCATTTGAACAGCTCAGGACCAAGACAGATGGCTGTAGTTGATAGAGTCTGGAGAAAAATAGCATTTCCTGCATTTGGGTTATCATATGAGCGATCGCTAA-AAAAATGGCTTTGTTTTGTG-CTGGATTCTCTGGGCAATTAATTGTGGAAGATCTGCTGTGAGGTCCCTGC----TGAGTTTGAAATACTTGAGACATATTTCACAGATCCGTG----GTTACTTCAA----------GcctccctccctccctccctccctcccaccctccctccctccttccctccctctctccTTTGCTCTTCCTCCTCTTCTCTTCTTTTCCGTCCCTC-----CTGATCCTCTCTGCATTGGCCCCTTCCAATTCTCCTCTGCTTTGC-------CCTTTCTTTTCCCAGC---AATCTTCTTCCTT------TTCTGTGGCTCCCCAGCC-----------------CCCATCCATAAATAGCAAATCACAAGTAAGTAAAGAGAAGGGGATGCTGAGGGGATCGCTGGGTATTGTGAAAATTACAAGTGACTTTGGGGAAAGCTTGTTGGCATCCACATGGTATCATTTGCACTGTGAACTTAAGG--------------TCCATGTATGGGCTCCTAAGCACCAGGCAGCACTGGAGCCTGGCggagggggagggggagggggaggggaggggagggggagggggagggTTCCGCTGCCCCTGCTGCCAGTTA-TTTCCCAAGCCCTCCTGAGACTAGGCTGGGTATGAGATTTGAAGATCCCCAGCACATGGTCCTTCCCAGCTTTGATAGAT-GAACTAAAGAGAGCGATCAGTAATTAAAGTTCTTTGTACAAGTCAAAACAAAAAGTCTGATCACGAGT--GTCTGTGTGAATCACCTCCCACAGCTGCTAAGA-AGGAGGGAGTCAGATACTGTGGTCA-AGTCATCCAACTTGAAAACTTACAAGATTTCCTTACCCC---------------------AGCTATCTAAGCATCATAGAGCCCGGGGGCTAGCGGCCCACTCTATGG---TGAAAGTAAGTTCAAGGGCACTCGTTCATGGGATCAGTTAATCATCCCGAATCCATTCTGTAATGCTTCCGTTGAGTGCCTGCATGCTT------ACACAGCTACCGTGGGCAGTCTCCGACCTCGA------GAAACTTATCAGGAAAAACCAC---------ATGTTAAACAAAGAGCCTAAGTCAATGGCAAGGCACGGCCCTGGACATCTCTGCCGAGCACAGAGCTGGTGAAGACA--TGAACTCACTCCGGAAGAAGGGGAGGAGAGGTGGTTTTTTGTTTTTGGTTTTTTTTCCCACCCATAAAAAGGGTGAGAGTTTGCCAAGCTAGTGCCAGCAGCCTCAGAAGGCAACACTCACCTCACAGAATACCTGGCGCGTGCACAGGCATGGCTCAGAAACCACAGCTGACTGGCAACTCCAGTTCATGAC----AGGCAGAACCAAGAGCATAGGGAAGTTGGGGAGCAACCAAGGAGTCTGGGGAGATGCTCAGAGCCCACTGGAGGAAGCCTGAGTCTTTCCTAAGCATGTGGCAGCCTCAGAGGGT
s HiC_scaffold_1 111367562 2100 - 233722169 CTGGTGATACAAATTGGCAGCTATGAAAGAAAGGGAGgtagagaaggaagaggaggag------aaagataaGAGGAACGAacgaggaaaaacaaaa-atggaggAGGTGGTAAAAGCAAGGGGATCC-AGAACTATCCAGGTCC-AGTCTGCAGTCCACAGGAA-------CACACAGCCAGCACTCAGGGAACTGGGGCTCTTGTGTGTTTCCCCGT----TAATTACCCAGGTTCACACCT---------TGGTGTTACtc-----tgtcttctgttaaagatg----------tAAACAGAGTAAAAGAAAGGATTCCCGAGATGAAAACAACCTTAAAACCCTTAAATAAGCAGCAGTGGCTGAACTTTTGGAACCATTCCCAACTGGCCTATCTCTTGCCC------------------TCCCCCACAGT-TGCCTCAGGCAGGACTAGGCctc--------tggctgggctc---tggggtggGGCCTAGGAAGGGTTGTGAGCCTTAGCATTACTCAGGCTGAAATGGCTCTGTGGTAGATGAAGATGAAAGGGACCCACTGCCTGCCTGACATCTGGCAACCAGAAGTGGGTTGGGggagtcactgctgaattccacaagttGGTTACTGTTGCAACAAGGACTACTTTAGTCTTGTcactgat-----------acacacacacacacacacacacacacacacacaaaca-----------------------------------------------------------------aaggaaaaagatatttttaagcaATTTCTGACCAAGACAGATGGCTGTGGTTGATACCGTCTGGAGAAAAATAGCAACTCCTGCATCTGGGTT---ATATGAAAGGTCGCAAAGAAAAGGGGCTTTGTTTCATGACTGGATTCTCTAGCAAGTTACATGTTTAGAATCTGCCATCAGTTTCTTACCATTTAAGTAGAAAATAC---AGATATATTTCCCAGACGTGTGTGTAGTTAATTGAGGTAATGATTTGCctgcctcccttctttctctcccgctcccctttcttcctctcttcctttccctttcatcttctctttc-ccttttcttctcttatcCCTCACTCTATTActgtcctccccttccct--ccccttccttctctcccccccccttcttttcctccattctttcccCCTCTCAAGTTTCCTTTTCTGgttcattctgtctttttctagttttatttctgtGGTATAACTCTTCTACAAATAGCAAATCATAAGT----------AAAGGGAAATTGAGGG--TCAC--AGTATTGTAGAAATTACAAGTGACTTTGGT--AAACTTGTTGGTGTCCATATATGGTAATCTGTACAGCGAATTTAGAGACATGTCCTCTGCTTCCACAGCTTCTATTCTGCATACTATTAATCTCTGAAGCCTGGAGGAGGAG--------------------------------------------------CTGCTGCTGATTAGGTTCTCAGGGTCCTCCAAG----GACTGGGTATGA---------ATCCCAGACAGATGTTCCTTGCCAGCTCTTGTGGATAGAACTAAAAAGAGCGATCAGTAATTAAAATACTTGGTATAAGTAAGAACAGAAACTCGTATCGCCGGCTGGTCTGTGGGAAT--CCTCCCACCCACGCCAACATAGGAGAGAGGTAGCTTTTGTGGACAGAGTCACCCAGGC--AGAATTTACAACGTT---TTACCCCGATTCACACACAGACACTTGAGGCAACCGCAGTTGCCTAGGGCCAGTGAGCTGGAGGTTCAATCTGTGGGCATGACAGCACATTC-TGGGAAGGCATTCATCTAATAA-------ACCCTGCATCTATTTTGTCAAGCTTTAGTTAGATTTTAGATTGTTCAGGTGAAGACAGTTATTCCAGGTGATCACtgatctcaaaaaaacaaaacaaaacaaaataaaccctcAGTAGGTAACATTAAACaagtaagctaaataaatga------aTTCCCTTAGAGATCTGTAAGAAGTGCAGAGCTCTCATAGATGATTGATTCAATTCCAGAAAAAGGGGAGGAAAGTTGCTTCTTGGTAT----------------CCCTCCAAAAAGGTTAGTGTTTGTCAGGTTAGTG--GGTAGCT------------------------GAAACGTTGGCTCATCCA-------GGCCAAGAAACTACTGATAACTGGAAACACCAGATCATAGCAGGAAGGAAGAGTCAAAAGCACAGGGAAGTTGAAGAACAATAAAGGGGAAGTGAAAGGTTCCTTGTA-CCACTGTAGGAAACTTGAACCTTATATAAGCAAATGGCATCTCCAGAAGGT

a score=230939
s chr3           101377398 11402 + 160039680 [encoded data, 12450 characters]
s HiC_scaffold_1 111378487 11084 - 233722169 [encoded data, 12450 characters]

a score=182737
s chr3           101389289 8325 + 160039680 [encoded data, 9094 characters]
s HiC_scaffold_1 111389532 8438 - 233722169 [encoded data, 9094 characters]

a score=36166
s chr3           101397620 2613 + 160039680 cagcgggacatttgtgttgcttccagtttgtggctattaagagggaagctgttgtgacacttgggtatttgagtggacttaggtttttgtttctcttgggtaaatgcctgggggtgtgattgctg--ccatccagtaactttatgcttaatttgatagggaatatccagg---------------------------------ctgttttccaaagtggccataccaacccgcacgttcaccagTCCTATAAGGAAAGAACCTGAAATCTGACTTAGAACCCAGAGCCTTGCCTGTTAACATTACAGTGTCCCTGGCTGATGA-GTGTCCCTGTGCTGTGAGCCTCCCTTTTACCATAGGGTATCAGGGAGAGTGTTAAGTCCCAGGGAGCCAGTCAATGGTGGAGATGTTTCCTTAAGGAAACCCTTAACCA---------------------------------------------------------------GTACAGGGC-TGCTTTCCCCAAA-----------------------------------GGCCGCCCCCTCCCG-------------------------------------------------CTGGTTGCT-----------------------------TTCATCTCTGTTATGGCCTTGGCTGTCACT-AAGATTCACTGGTGGAGTT-----GCTCAGATGGGTACCCACTTGTACTCTGTGGACACTGGAACAATCTG-TGCTGTGTGGCTCACTTCCCATGTTTTTGTGGGCACCTAAGATGCTGGCTCCTGGCCAGAGATGAAGTTACAGACATC------TGAGCGAA---------GAAGCTATGA-GATGTGAGGACACTGCCTTAGCACCTCTGTAGCtgtgtgcgtgtgtgcatgcgtgtgcgcgtgcgtgtgcccgtgcTGATTGCTGGTGTGCAGG-CTGTGAAGGGCTGTCCCTGCTTTATGGCCCATTTCAGGCCTGGCTTTCCCTGTCCAGGGCTCCTCTTGACTGGCAACCAGACTGTA---GTTTCCTGCATTGCTTTCCTGCTAGGTCCCTTGTGTTTTGAAAGAGCCAAAACCAGACAGGGGCGCTATCAGGTTACAGCTCCGCTTGGTGTGGAGTCTGAAA---AGGAGAGGGAATGTAGGAACATGTGGTTGGATTTACTTTCTTTTTTTTTTTTTCCTTTTCTTATTTGAGGCAGCACTTCCTGAGGGGGGCCACTGATAATTAGGCTCTCTCTGATTCCCGAGGCCCCAGTGAAGTAAAGCACAAATGTTGTTTTCTAAAGGACTGTTGTTGCGGCCAGGCCAGTGTGCCTGCTGTGGAGCTCC-TCCTGCAGCCTGTGCGTCTGGAAGCTGC---CTCACCAAGCTAATGCATG--TTTGAGAAAGACAGAGGCAGGCAA-GTGAGTGTGCCTGCCTGCTGGGATGAAGATC-------TGAGATTGAAAGTT-CTTCCTGGCCCCTATTCCTGCCAGTACCAGCAACTG--------TGGGTTGACC---TGGCCTTTCCAGACTTTGCCTTCCTTACCATGGATA--GAAGTCCCATTTAGTCTCACAAGGGGAGAGAGAGGATGTGTCACAGCAGAAGCATTTTAACCTATGTGACAGTGTGACATCTAGAGGTGGCCCTGTCTCTGAGCATGTGCTTATTAACT--GGAGGCAAAGGCAGCACTCAGAAAGCCACCTACTGTCTCTTCCTGCGACCCATTGGTCCCTGTGCCTGTCCATCCAAGAGGACC-GTGTGCCCAGGATTGATTTTGGCAGGCTGGCTTCC-------------------TTCT-----TGCCTTTGA-----------------GCATAGGAA-------------------GGTGTGGA------AATGCC------------------------------------------AGTGGCC--------TGGAAGTATTTGG-------------------GAGAAATAGATGTGATGTCACATGGAGGAGAGGTTTC--TAGATGGGTCTTGAGAG----------------CAGGG---------------------ACAGGAAACCTAGGT--TCCTGGGTCCTCTCGGGAGTTAGGAGGGGCAAGGGGACCTTGCAGAGGTtgggctcacagttccttttctgtaagatgagagaacaggatcaaatgatct------------------------cATTGCACCAGGGAGTAAAGCTACAGAGAGGTGCTGCCTC---CTCTAGCA--------------------------------------GCCTCTTGG-----GTGGGAAGTCCCTGTGATTAGTAGATAATTGCTTCAGGGGCAGAAGTGGGGGTGGGAGGACTGC---------CCACTTTGGGACAGAGAGGGTCCAGGTAGGGAGATGCTGTCAGACCACACTGGACAGAGGCACCCAAGAAAGATGTTGCTCAGCAGTTTTGCCCATAGGGTCTTGGTGAACGGCCCTGACGATGGCCCTGCTGACATCTGTTCCCAGGGCGCCCAGGCTCTAGCACAGGGAAGTGATGGACACCACTGCCGCAGAAGCCCTTCTGCAGAGCATCCCTGAGCCATGCCCACTGCATGCCA--GGGCCCTGGCTTCTGGACACCAGCTGATGGTTTCCGTGTTCCCTGTTCCAGTCCATGGGCTTAGATTCCGTTAGGGCTTTTTCCTTGTGTACCTTCTTGCCTCGTTGAGCCAGTATGCTACTTACTGATGCAAGAACTTTTGTTT-------CCTTCCAGGGCAAATGTCTTGAATCCCACTCTGGttgttttttagataggatctcactttgtggc-ccaggatggcctg---gaattcagtcttcctgcctcagcctctcttcccagtcctggggcactaatgtgactcaccttgctctgctGTTCTGTTTGATGTCTCCCAGCTCCTGCTGGGAGTCCTGACCAACTCCAGCTCCT---GGACCCCTTTCATTAGGCTTCAGAATTCTGGTGTTCTTGACCATCATTGCAGTTCCATTTGGAAGATGATCGCTAGACCTCTTATCCTTGCCAAGTGACCCCAGGCTTACCCTCCTCC
s HiC_scaffold_1 111398647 2804 - 233722169 caaGGGAACATTGGGCTTACTTTCAGTTTGGGGCTACTGTGAATAAAGTTGCTATgacatgtatgtgtttgtgtggaCTTAGCTTTCTGT------------AACACCTGTGACTGGAATTGCTGAGTCATCTGGTAACTTCATGTTTAactttgtaagaaactgccagaaaaaaacagtaaaaaaagaaagaaacttgtaCCTTATTTTCCGAAGCGGCTACAC-ATTCTGCTGTCTCACCTGTTGTGTGCGAAGGGGACCAGGAACCTGACTTGGAATCCATTACCTTCCCA--TAGTGTT-TAGtgtcacttgctgctgaagtGTTTGTGTGCCCCAAGGCTGCCTTT----------------------------GTTCTTGACAGCCAGTGGATAGTGGAGAGGTTTCCTTGGAGAGACCATTAGCCACACAAGctgccttcttcttcttcttattttttaatttttaaaaattaaaaaaattttctcactgtgtagtgcgtGCTGACCTTGAACTGTCTTGTGTAGCCtacactgggcttgaactcacagcctcagcctctcaagtattgggattacaggtgtgtgccaccatgcccagaagaCTATTTTTCCTGGTTGCTGCTGGCCACCCACATCTTTGCCTGTTTGCTTTGTGTGTGCCATCACCTTGGCTTACAATGAAGACTCAGCTGTGGAGTTCGAGTGCTCTAGCTGGGATGCG-TTGCAGCCTGTGGACGCTGGAACGGTCCACTTCTATGTGGCTCGCTTCCCA-GCTTTCACAGGCTTCTCTTACACTGGCTCCTTGTCAGAGCTGA-GTTAGAGACACCCTCTCCTAAGTGAGCCTGACACGGAAGCCAAGGTGGGGTAGGGACACTGCCACTTCATCATTATGGTTGCTGGTGAGGG-----------------------------GTGGCTTGCTGGTGAGCAGGGCTGTGTGGGGTGTCCATTGCTTTATGACACATTTTAGGTCCAGAGCTCGCTGTTCAGGACTCTCCTTGGCAGGCAGCCAGATTCCACCAGTTTCCTGTATTGCTTTCCTGTTAGGTCCCTGGTGTTTTGACAGAGCCAAAATCAGACAGGAGTGCTATCAGGTTACAGTTCTGCTTTGTTTGGTCTCTGTGACTGGAGAAAAGCATTTCAggaacatatggttggatttacttttttctttacttatttct----------------gtattttgtgaGTGGGATCACTGCTAATCAGG----------TATTTGGGGGTGAGAAGAAGGTAAGTGCAGGTCTCCTTTTTGAAAGGATTGTGGTCACAGCCAGA-----GTGCTAAGCACAGAATTTTGTTGTGTAGTAGACATGCTGGGGAGCAGCAGGCTCCCCAAACCTGTGCATGCATTTGAGA-------AGGCAGACAAGGCTGGAAAACTTGGCTGCTGGGCTGAATATCCTGGCCTTGGAATTGGAAGCTGTTTCCTGG--CCTTTTCCTGACCCCGGCTACCACTGTGACCTTTTGGATTAATCATTTGATCTTTCTGGACTTGAGTTTCTTCACTACAGAAAAGAAAGTTCC--TAGATCCC------------------TGCAT----GCCAAAGCCTCTTTACATGCTTAGGGATGTGCCACCTCGCCTTGCCCACCTCCCTGAGCATGTGTT--TTGACCAGGGAAGCAAAGCTAGCACCCAAGAAGCCACCTGCCA-CTCTTTCATTATCCCATTAGCCACTGTTCCTGGATCACTAGGAAGACCTGTGTGACTAGGAGCAACTTGGACAGACTGGCTCCTGAGCGCTGGTGTGGAAACGTTCCGCAGGCGCCTTTAACTGACAGTGATAAATGCACAGAGGAGGACATAGCTGCTGAGGAGCGGTCTGGAGACCAGGATACCTCGGAGTAGTAAGGAGTAAGTCAGAGCTACAGAGGGTCATGGAGTGGCCATCCTAAGTGGGATTACTCAGTGAACTTCAGGTGTGAGTAGAAAAGGAGCTGTGATGTCA-GTGCTAAAGAGGTCCCTGTGGGTGGATCTTTAGAGAAGCAAGGTGGCATGACAGGGACAAGAGTGTAGATTTGAGAAACAGGAGACCTGGGTTCTCCAAGCTCTTGTCAGGATCCA------GCCATATGACCTTGAAAAAGTTGATCT-----TGCTTTATCTGTAAGATGAGAGGACAGGACCAGGGGATTGACTCCAGATCTGTTGGTGGCTTTACAGTACACCAGAGAAGGATACTCAGCAGAGGAGCCTCCTCACACTCTCACACTGCTCTTGGAGAAGGGCAGGCACAGATATGCCTGGAGGCCTCTCTGTTCTAATGCTGAATCCCTGTGGTTTGTGAATAATTGCTTTAGGGGCAGAGG-GGGAGAGTGAGGACTGTAAATGAGGAAAACGATGGGTCCCAGGGGTTCCAGGTTGGAAGGTGTTACCagcc---------------------------------ctcagc--------------------------------------------------------ttcccaaggc---------cCAGTGTGGAGTGCTGACGGATAACACGGTGGCAGAACTGCTATCTCAGCAGAATTCTG-----TGCCTGCTACCCTCCACCACACCTTTGGTTCAGGGCACCAGCGGAGAGCTTCCA-GTTTCCTATTCCTAACTGTGGATATAAATTCTTGTTGAACTTTTC-----TACGTTTTCTTACCCTTTTGAGCCAGTGTGCATCTTTCTACTGGCATGATTGTAGTTTGTAGCTCCCTGCCAGGTCAaat--------------tttgctatttcttt-----gtAACACATTTTTTACCTTCTGGGAGCCCTGACTGACTCCAGTC------CCTGGGTCCCCTTTCCTCAAGCAAGGGCTCCCTT-----TCACCTATGCTTACTG-------------------------------------------CTCCAGCTACTTACAGACATCT-------------AGAGTTCTAAAATTATTAACCACAACCACAGTGTCACTTAAAAGCATATAGTTTGACC---TACCTTTACTAAGTTGCTCCAGACTTAAACTTCCCC

a score=26387
s chr3           101405346 1466 + 160039680 TGTGCACCCTAGAAACCCATCCTTCTTC--GCACTTAGGCTTTTTGGTCAGGGGACATAAAGGAGATTGAGGGAACTCTTTGGTCAGTGAGGG-------------------------------CAGCTGGCAAACTTACAAGCGTAA-----TCCTACCCCCAAACAATGCTTTTTATAAAATTTCTAGATAAAATGCCCTAATTTGAAAGAGTATTAGCTAGGATTTGAGCTAGCG-TGTGAATTGCGTGGTTCCATCTGCTCTGTACCATGGCCCAGTAGATCTGCAGCGCCATTTGTCACACTTTGTTTTAAAGCCTGG--AAGATAAATAGTCCTGGATGCTGTCCAGACCCTCCCATGGA-ATCCTGCATTTGGATCATGGAAGGGG-TGGGCGGTGA-GAAATCAGGGCTGATCAGGGAAGGGTGCTGTGTTGCCAGCAACACGTACGTGCT----GTCCCCTCGTGGGCTTGCTGGTGATTGCCGTG-------GTGCCTGGTGCCAAGGGGCAGGGCAGACCCCATCCTCTCTAAAGCAGGATGACTACtcgttcgtttgttcattcattcattcattcaACCAACTGATTTTTTTTTTTTTTTGAGGTCTTATTATATGGGACATTACACCCTAGGGACCGGGGATCTAG---TGCCAGTATT---TCTAGCCTTTAGATCCAACATGCCACTATATATCACCCTT-ATTTTATTAGTGACTTA-AGCGCCTTTCTTCACACATAGCA--------------------CTTGAGCTCA-GAAGTCTCTAGCCTTTGCTCTTGAT-TGTTTGAAGCCTTAATGGGAAAGAAGCGATCATGACATGTGGA------------TAGCAGGGTAGA---CTTGCGACACAGAGAAAGGT----AGAGCTAGCTGGGGGAGGGCTCCTTCCCAGGGACTGGG-----CTCTGGGGAC---------TGGACAGGGTGTGG------TTTGATAGGTTGCCTGCAGG------GAGG-ACCTGAGACAAGGAGTGCTGTTGTTTGTACTGCTGG-----TGTACTGGGCTTGGGG---CTGCAGAAGAAAGGCTGG-TGATTCATCCCAAAAGCATTTCTATTGGGCACTGACCTCCTGGGGCACAGAGGGG---ACATGGGATGAGGTAAGATAAGGCTCTGTGTGTTGGTGGCCTTCTTCAACACAGTGAG-TAGGTGTGGGGAGAAATTTCAGTGTAGTGTGGACTCACAGCCCTGGAGGA----------CTTCCTAGGGGAGGAAGTGCAGGCCGTTTCCTAGCAGAGTAAACAGAAGG-------GCTTTAAATTGTTAACTACCCAAAGCATGGAGAACAGGCC------------TTGTCCCAGGTGAAGGACTTCA-AGTGCTT--TGAGTTCCCCATCCTGTTGTGGATGCAGGCCAAAGACTCCATGGGCAGGTATTCATTTAATTCTTGCAATGATGGGTCTATGGTTCAATGCGTCCAAAGGATGGGCATTATAGTGTTTGAAGA-------------------------------------------------GGAGCATTCTTGATGTGTGAGCCGTTGCCTTAAGTCGTTTCTGGAACACTGTGGGTGGGAAATAAAAAAGTCTTTTTTTCT-CTGTGTGTGTGGGGAGTTG
s HiC_scaffold_1 111405753 1582 - 233722169 TATGGGCCCCGAGAATCCATTGTTTTCCATGTGATCAGGTCTTTTTGGTGGGGAACAGTGGGCAAA------AAAATCTGCAATCAGCGAGAGTGGCCAAGAGCAAGTAGATTTGTAAATGAAACTGCTGGCCAATTTACAAGTGCAAATTTGTACTACCCGCAAACaatgctttttataa--tttctagatAAAATGCCCTAATTTGAAGCAGCATTGGATAGAATTTAAGTTGATGGTGTGAATTGCA--GTCCCATCTGCTCAGTTCCATGGCCCAGTAGCTCTGTAGAGCCATTTGTCACAATTTGTTTTAAAgcctgggaaaaaaaaatatgcctGGATACTGTCCAGAACCTCTTAGGGAGAGGCTGTGTGTGGAATGTGGAAGGGGATGGGTGGCGAGGAAGCCGGGGCTGGACAGAAGAGGGACCTG-ACTGTGAGGCAGAGGAAGGGGTTTCAGACTCCCTTGTGAGTCCCCTTGTGGTCATTGGGTGAGCTCAGGTTTGGAGGCACAGTGTAAGGGGG-------TCTCTCCAAGGTAGG------GCTGGGCCAGTTA-TCAAGCACTCTTCCATTCGTTCTACTGA--------TTTTGTTGAGCTTCTGTTATGTCTCATACTCCATCCCAGGAACTGGGAATCTAGCTATactaatattttctctag-tttaagACCCAGAGGGCTAAGA---ATCATTGTTCATTTCATTAATATCAGAGAGAGCATTTCTCCAGGCACAAAGACAATGTATGTGGAAACCGTCCTGAGCTCATGAAGAGTCCAACA-TTGCTTTTGATGTACTTGAAGTCTCAGAGGGGAAGAGGCCAACGCTAAGTGCAGAACACCAAGCCGGCAGCTGAGTAGATGCTTTGAAGGACTAGCAAAGGGGACAGGGGCCATCTTCGCCAGGGAGTGTGTTTATGGAGTGGGGCTTTCTTGGGGGACAAAGAACTTTGACTGAGGTGAAGAGAGACCCTCACAGAGGGCTTGGAAGTAATTTGAGGCCCCTGTGAAGAGGAATGCTGTT-------CTGTTGGGGAGTTACCCTGGGAAAGAGGGCTTTCTGGAAAGATAACTAATTGATTCATCCCACAAGCATT--TATTGGGCACTTACTGTCTGAAGCAGAAAGGGAAATACAAACACTGATTTAAGGT---GTGCTAAGTTtagagag-----------gcagaaagatttaTATGAAAATGAATTTCAGTGTGGCAAGGGCACACAGCGCAAGGAGAGAATGCCTACTTGCCTAAGGCGGGAAG---AAG--GTTTCCTAACAGAGGTAACAAATGGCAAACGAGTCTTAAAGTATGA------CTAGGCATTGGG--CGGGCTGGGTGGAGGAGGTTTTTGTTGGTGCAGGGCTTTGTAATGCTTCATAAGTTTGCCTTCCTATATTGGATGCAGGTCAGAAA-------GCCAGGTG--------------------------CTGTATTTCAGTACCCCCAAAAGAAGATCGTCATTAGGTTTGAGGAAGAGAATTCCTTGTTCACTCaagaaaatgtatagaaaaaaaaaaaagatagagaatTCCTTGTGTTTGAGC---TGCCTTAAGTCTTTTCTGGAATATTGTGGGTGTGAAACAAAAAAGTAGTCCTTTCTGCTTTGTGTGTGGGGAGCTG

a score=36958
s chr3           101408434 2492 + 160039680 GCCCTCCACCAGTGTTAACTCTTT--CGTCAACTGCCCACAGCTGAGCTGAGCCCATCTTGAGCCTTTGGCTTCAGCCCCCCTAGCATGGAAGCCTTGCCAGGGCCATAGGCATCCCCTCCAGACCAGGCTACCCATCTTCAGAGAAGGCAGAGGC-TGCAGGCTCAGGGAT-ATCTCAGCTCTGGATTCTGCCCAG-CCGTTCCCAAACCTGCAGTTCTAAGTGTTGCGGCTTCTAACTCCAGTCAGAGCCTTCCACGCTGTTCTTCATCTGGCTCTCTGTGGTTTCTCAGAG--------TTGTTTTGA--TCCCGAGACCATGAGTCTGCACGTCCCCCT-------CCCATCACGTAAGGGAGAGTCTTTTTTCTGGCAGAGAGGAGTGTGTAAGTTAGGAAACACAGGTGCTTTGAATTGCACAGTTCTTGGAATTA-ACAGTCTTGGAGCTCAGATGAGATTTTTAAGGATTATCTATGTTCCttttttttttttttttttaaaaaaaaaataGGT--------ATACAGAGAATTCATCCCT-------AGAAAGTAACGTATAATGTCACATCTCCACCCC-TGCAACACACAATGTCCTCACACTCAAAGGAACCCCGGTGGAATAGTATGTGGTAGATTGTGACATTCTGTGAGGCTCCTC-----CCCCAACCAATATCCT---GGAAGAGGAGGGAAACGCTCGATTCAGCTATGAGAGGAATGCTTGCGCCTTGGGCATCCACAGTAGCTGGATTGTGGGACTGTGTGCCCTGCCTAGGCCCGGGGCTGACTTCTTAGCTGGCCTTCAAAGGACAGATCGCCATTGAACTCTGGGCAATACCCAAAAGTAGCTCGAGGAAGCCGAGAGCTGTGTTTCTGCAGTGCGCACCATCGATCCATAGCATTTGAAGCTATTTTTCTCTGCAAGCGTCCACAAAATTCATTACTTTACAATGAGCCTGGCAGGGACTGCGGCAGCAGGGAAA--CTCTACACGGGTCCCAGGCGCTCTCTCTCTCTCTCTCCTGGAATTTCGCCTTGGCAGGTAAATCAAATACCCAGTAAACACACTTGT---------------------------GAACTTCTCCAAAGCCGCTT--------CTGTCCGT-----------------------------------------GGCCTTGGCTGTCC----------------------------------CTCGCGG-------------------------------------------------------------GTGGCCTTTCATTTTCCTGGGCTTGGC--CTGCT------TCCCCCATGCACTGGGGTTGAGCCCTGTGGCTGTACAGGTATGGCCAGCTAATCCTGCCAGACAAGGTCAGAAACAA-TTAATGGGCATAATCTCTCtttttttttttttttttttttttACCTGCTAGAGC-CAGACTTTCTTTGGTGTCTCTCCTAAGTCTG---------------------GAGAAAGGACTGAGAGGAGAATTGAACTTACCCTTCGGATGCACATACCCATTCACTGCTCTGTG---CTGCCCCCCACCCCGCCCCCGGGCTGC-TCGTTATGAACGCTGAAGCCTTA----GGTGGC-----GGTTATGTTGGAGATGCTGCTTAAATGCTATCTCTCGCG-CACTGCCCGATAGCAGTCTGCCTTGTTGCCGCCTCGGGGTGCTGGCCC----------CCTCCTCAGATCCCTATCTTACCTTGCTGTACACAAAAGAGCTCC---------------------------------TCTCTGGG---------GGTTCTGAGTTTTGGTTCTCaaaaaaaaaaaaaagaaaaaaagaaaaaaaaaGCATTTCAGACGTGCAGCCCCGTCAGAGTGTCAGTCTTTACAGCTGTCAGTCATTCGTGGGATTGTTTTCTCTCCCTCGCCCCGTTTGGCATGGTGTGTATATGCT--GCTGGAGATGGAATCCAG-TCCTCTCCCCTAGAGTAAGCGC----ATGGCCTGCCACTGAGGCCACCCCCTCCCTCCTGCCAGGGTTATTTTCCAATATGAATGCCTCCTCTCTGTGAGCACTTTCTTGGTTGAATGTGTAAATTTGGAGTGCACTGCTTTCCAGGAACAGGCCCTGCCTTGGTGACTGACTCTTCCTCTGTCTTGACCTTTGTGGCCAGCCAAGCTC-TGTGGGAGCTTCAGGGTATGCAGCTGGTAGGGACCGTGAG--GGGATGGATGGCAGGTATTTTAAAGTGGCCTTGAATTGGCTGTCTTCTGGCATCCTCCTGCAGTCGATGGGCAGGTTATTGTGGCCTGTGAAGGCACCTGCTGTCAGAGTGCTTGCCCTCCTGTCAGCTCTGTGACT---TGTCTCTTCTCCTTCTGCCTTGCTG----------------------------AGTGCTGACTGCAGATGATGGTTTTTAGAGCTGCAAGGCCCGGTGGA--------TCTCTTCCCTG-------CAGCAGTCACT-----CAAAACCTGGGAGGAGTTCCTGAAGGCTCTCAAGACATCCCTATGACTCCTGCCTCCTGACCACACTTCTGTCACATCTCCCCTGCAAACTGCCCCCTCCCCCTCCC----CCCATTCCAGC--------------CCTG-ACTGCT-CTGAGACC--CCAGCAACTCTAGACTTGATCATTCCTTTGAAG---TGCCCCCCAA------------CCCCCACCCCCTGAGTTCCTCCTCAGTGGTCCTCTCCTGTGCACAG-----GCTGCAGCTCACCAGCCAGCGTCCTGGGCC---CCTAGATCTGGCTGCTATGCCCTGCTGCTTCATGGTTTTCCT
s HiC_scaffold_1 111407410 2697 - 233722169 GTTCTCCACCAGT-TTGCCTCTTTGATGTGGGCTGTCCACAGC--AGCAGGGC------TGAGC--TGCATTTCAGCCTCTGTAGCATGGAGGCCCCTCT-GGCCCATCA-TATCCTCTCCATGTCCATGTCCCCACCCTCACAAGAAGAAGGGGCCTGCAGACTATGGACTGAGCTCAGTCCTGGCTTCTGCTCAGGCCCTTTCTGAACCTGTAATTATAAGTGCTGC---TTTCAGTTCTAGACACATTCATTC-----------TATGTTGATTTCTGTGGTTTctaagtgggtttttttttttttaaactcttaaggtcatgattctattttttttttttttttgtctaatcaTTTACATA----TATCTTTTCTTG-----AGTTAGATACAGTTAAGGGACTTTGGGTGCTTTGAAT-ACTGGTATcataaaattatacaattttgGAGAT-GGaagggtattttaaaaattgtctgt----------ttctcttcattttaagaaaataaaatgttttttgacATGTAGAGAATTTATAGCtttagagaaaaagttaaaagattATCTAAAGTACCCACTTTGTCCACCATAAAGCACCAACAAATTCACATCAA-------------GTATGCTGAACTTTCTGAGACTGAGAGAGACCCTGTAAGATCCCCAACC----TCCTAAAGCAGAAGGTGGGAAGTACTT-ATCTGGCTGTGATAGGGAAGGGTGAACCC-AGATGTCCTCTGAGGTTGCACTGTGAGAGATTAAGCCATGCCCAAGCTTGAGGCAGACTTCTTAGCTGGCTTTCAAAGGACAGATTGTTGCTGGACTCTGCAGAATACCCAGAGGCA--------------------GTGTCTCCGCAGTGCGCAGCATCGATCCTCAGcattcaaagctatttttctctGTGAGTGTCCACAAAATTCATTACTTAACAATGAGCCTGGCAGCAGTAGCTGCAGTGGAGAAGCTCTCTGCTCAGGTCCCA--CAGTctctttat-----ttctggaattttgccTTTGCAAGTAAATCAAATGCTTAGTAAATACACTAGTGTCACTGTCCCAAACACCAGGGATTTAGAACTTTTTCAGAGCTACTTTCtatttgttgtctgtttgtctccCCCCcacccactttttttctttttttgaaacaaggttccggctgaccttgaactcactttgtagctcagactggccttgaactcacagggatcctcctgcctcagtctgccctgggattataggtgtggttTGCCTGTTTGTTCATATTgcagccttttatttatttgggtttagcagctgtctgtctgtcctccaTATACCAGGGCTGGGC----------TACAAGTACATCAAGTTAAGCCTGCCCAACAAGGTCAGCTCCAAGTTAATgagtaaaatttctctttttcttcc------------------ctagaGCACGGATTTCTTGTAATATCCTTCCTGAGTTTGGGCAGACAGAAATATATGCCTGAAAAACGATtgttggaaaaaattaa---atcttcaGCATG-------CCATTTACGGCCTTACAGATTTGCGTTCTTAGCTTCTCCAAAGCTGCTTCATTCTGTATGCTGTGCCCTTACTCTGGTTATCTCAAAGTGGTGTCTGAGATGCTGCTGAAATCCTGGAGTAGGTGTCACCACTTCATGACAGAC--------TGCTGCTGAGGGCTGCTGGCACATGCCTTCGTCCCACACAGATCTGTATCT--CCTGGCTGTCCACAAAAGGCCACTGATGCTGTGTGTCAGCATGGATCAGGTGGGGGATCTCTGGAATAGCCAGCATTTTTGGGTTCTGATTACC--------------------------ATGTAGGTATTTTAAATATGCAGCTCCAACAAAGGGTCAG-CTTTTCAG--AGCCCTCATTAAtggcatcattttcttttcttctttcttttttcttttgtgtatgggGGATTGGCCGAACttggagccttgagattattttcTAGTGTGAATATTCTATTTGCCCGCCATT-----------CTTCTTCTTAGTAAG---------CGGTCAGAG-------CCTCTCTGAGC-CTTTCTTGGTTGACTGTATAGATTTGTCCTCCATTGCTTTCCAGGAATAGGCCTTGCCC---TCAGTGACTTTTGCTGTGTCTTAGTCTTTGCAGCAAGCCAAGCTCATTTGGGAGTTAGCAGGTCTGTAGCTGATTGAGACTTTGAGAAAGACTGAATTCTAAGTATTTTAAAGCATCCTTCAATTAACTGAGAACTG--ATCATTCTCAGATCAATCCAAGGGTTATCATGGCCCATGGAGGCAACTCCTGTCTGAATGCTTGCCATCC-ATCAGTTACGTGGCTGTGGGTCTTTGCCCTATCTTTCCTGCtgcaagaattattttttaaattatttttaaagagtagaTGACAA--GATATCCTGGAGAGTTGGATGGTCCTGGGAAGTAGGTTCTCTGTCCCCTGGTGATCTCATCAGTTGCTCTCACCAAGACCTGGGAGTTATTCTGGATGACCCCATAGTCACCATTGTG-CTCTTGACTCTATTGTACTTTTTTATTGTA-CTCTCCTGCTAGATTACCCACTCTACTCCTGTGATCTATTCTAGTTGGGGCAACTGTCACCTGCACTACTGCAGAAACCTACCAAGAATCCTTTCCT--GCCATTCCTACCAGAACCTGTTTCTCAAGAGATTCAGAATCTGTTTTCCCTTCAGT---TCATTGGTGGTTCTCTACTGCCCAGAGATGAAGCCCAAGCTCTTCAGCCTA-GCACTGAGCCCTGCCCTGAGTGGGCCCCTTT---CTGCTGCTtcatctctctcct

a score=24362
s chr3           101416212 2561 + 160039680 CCTAGTTTTCTAACTCCACTACCTATGTACTGGGGGACAGAGTGAAGACAACGTGTTGATGGATACAGCAGACTGAGT---TTCTCAG-----------AGCAGTGGTAACTCCTTCATAGCCAGGCCTTGTTTTGCAGGCCTTGGGAGAAGCCCTTC-TTGT--TCTGCTGCCT---------CTCCC---CTACCTCGGGAAGCACC-CCAGCTTGTGTTCAGCCTGGGCCAAGCCTGGCAGCCTCCTTTAGAGGCCACGTTGAGCATCATGCTCCAAGGGCATGCAGGTGACAGCCTGCATCTTTTGGGAGGACA-----ACGGGAAGGACTA---AAAGCCACAATGCCAGAAGATGAAGTGGAGTTAGGTTTTCGGAGCCTCCTCGTGTGGGTGGGGTGTTAGGGTTTGTGAAGATGCAGA---GACATGCAGCTAC------TTTGCCAGGGATGGAGAATCTGGGGAGA-----------CTGATGGGGGGTTGGTGTCCAGGGCCCTAAATAGTGGCAGCAGGCGTTATGGATGCATTATAATGGGGAGCCTGACCTGCACTGGTTTTCTGCAGTAGTCCTTTACAGGAACTCTCACTAAGCCTGTGGT--------CCACTTAT---GCCCAGATTG-----TGGTGCCAGGAGGCTGCCCTTTGCAGCAAGCAGCCTAAACCCTGCCTGTTTCTGTCATTTCTGAGACCAGACAGAG--AAAGAGTGGGTAAGGTAATTATAAGTTGAGCATTTACAGGCAAGGAATCTGATCCTGTCCTTTAATTTCCTCCCGTCTAGAAAATAGAAAGCATTCAGATACTTAC------ATCCAGACACAAACGCTGTGATTGACAGCTGCTTTGACTCCGAGTGGGGCGGAGAGAAGTATCTGCCGTGTGGCCATGGGCATTAGGTTTTAAGAC-AGGCTGCCAGTTGCCC-----ACTGCTGCCCATCCTTCTAGAAGCTTCTTTTATGCCATCTTTAGCATGGGT-ATAATGGGGAAGAAGGAGAGGGATGAGGGGGAAGTAGGACTCTG-------TTCCCCTACCTCTTC-----AGGAGCCAAGAG-GACAGGCAGAGTGGTCTTTGGGCTATATGA------TGCTGAGCCCA----------------------TCACGGGAGGAAAAAGCGAGGACCTCC------------------GGAAGCAAGCTTGAGCAGC---CAAGT-------CCTTTTA----------------CTGGAACACATG-----------------------------CTAAATGGTCACTGAGACAAAAGTGAAGGAATCGTATCAGTTCAGATGAGGAAAAGACAAGGAACATAAAAAGGAGCTTGTCAGTACTAAGA---AAAAAATACATGCATACATATATATGATCCAGATATCCATCAAGTGGAGATGACCCTATGATGGTATG-----GTATATAGCTATGTAAAGAAATATACATCAATATAAAGtatatttatttaaatgctttaagatttattttattcatgtgtatttgtgcaccacatgaatgtctagtgcctttggcagtcggaagacggtgctggatccccttgacctgtagtcatggccgattgtgagctaccacatggatgatagcaatt---catctggggtcctctgcaagaacaacgtgtgctcttaactgctgagccatctcttcagactcTAAAGGATAAAAGCTGTGTAAAAGTTTTGAACAAGACTGTATGTTTTTTGCTGGTTATGTGCACACAACCCTTTATCAAAAGTCCGAGAGAGTTGC--CCCTGAGGTTCATTTGTGACA-GTCTGAGGAGATGAAGAGGGAC----GTTAGTA----TAATAATCAGAAGAGTTCGTGGGACCCTGATTAAAAACAAAAACTCCAAGCGGAGCTGGTGT-TCAGCACTGAGTAAGGAGCTCGGCGTCTCCAGTGGTTCC-AGGCTGTGGTTTAGCAGC-----------------TTCAGCACTG-----GGAGCAGAGACCCAGCCAGCCCATAAACAGGAGCTGA--GCATCCGTGTGGAGTGGCCGTGTGCT-GGGTCACTCGGCAGTGCAGGTGTCAGGGACAT-AAAGTCATCTGGGGCAAAGTGAATCATTGATGGTTACACCTTCTTAGAGGTGGCATTAATAATTTAACATTTATTAAT---CATCTCTAGGCCATTTCTATTTTGGGTACCTACTGGAGGAGATTCGCTTTTTTTTTTTTAAAGACTGAAAAGATGAATGGATGATACCCTTGCCCTTGAGTCTCTCAGTAGGT-GGGCCTTCTGTTGGTTCTTTCTACCCTTA-------ATTTGGTATCCTTGCTTCTAAAGCCTTGCCCTCTGCTCTCTCTTCCAGCTGCCCCTAGAGCAATGATTTAGAAATATGAATCCAATCCATCTCCCTGTTTACCTCAGCGCCTCCCTCAACTC-CCTGGTCCTGGAGGAAGA--------TTATTAATATGTCCCTCAGTGCCCTCTCCTAACTGAAATGGAAGTGCCCTGAAGTTACAGGATAGATCTAGGCTGGCTTCCTGCTCAGCCTGGAACAGCAGTGATGCTGTCCTGTGTCAAGTTC-------CACCCCACATCCTTTGAGACATAGTCCAGATACACCCTTATCCCCCAGCTTCTATGAAG-CTTTTTGGAC-------CAGGCTGGAGGGGTTTCACCT-------GGCACCCCACTGCCAATCATATAGTATAGTATAGTAGTCGCTGTCATTTCTATTGGGAA--TACCAACTTAGGTGAAAGTTAC-------TTATCCTTCCCTCACATTT
s HiC_scaffold_1 111414724 2576 - 233722169 CCTAGTTTTGTGCGTCCACGGCCCAGGTTCTGGAG-ACAGACTGAGGG-ACTCTGTTGAGGGATGCAGGGGGCAGAGTGACTTCTCAGGAACATCCTGTATCCTTGGCCACCCCTCCATAGTCAGGTTTTGCTCTGGAAGCTCCTAGCAAAGCCCTTCACTGTCCTCTACTGCCTGGTGGGTTCCACCCTGACTGCCTGAAGAAGCCCCTCCTGCTTGCTTTCAGGGCGTGT-GGGTTTCACAGCCTCTTCCTGTGGCCCTGC-GAGCATCTGGCCT------------------AGCCAGC---TTTTAGGAGGACAGAGTGACAGGAGGAGCTATTCATGGCCACAG-GCAAGAGG--GCAGCAGAG-------------------------------------GGAACTAGAAAAGAGACCGATCTGAAATCCAGTAACCACCTTTCTGCCAG--ATTGAAAATCTGGAGAAAGCAGTCTCTCTTTGAACCAGGAACGGAGGCTA-------AAGTAGCAGCAATAGCCATTGTT------CTGTGACAAGGACCAACGCCTGGGGTGGTGCCCAGCAATGGCCCTTTACTGGAACTCTTGCTGATTTTGTGGTTCCCAGAGCCACTGGGCTGGGCCAGCTTGGGGGGTGGTGCATGC--TCTGCCCCCCTCACAAGTCAGCC-AGCTTCCACCCATCTCCGTTATCTGTGAAACCGGATGGAAGCAAAGAGCAGTTAGGGTAATTACAGGGAGAGCATTTACAGGCAAGTAATCTGATCCC-------------------TCCAGAAAATAGAAGG----CAGATGCTTGCTCTCAGATTCAACCAGAAGCCTTTTCAGTGGATGCTGACTTGCATCCTGTTGGAGCTGAGAAAGGGGTCTGTCCTGTGGCTGTGACCCT---------GGACAAGGCTGCCCGAGGCTAGGCTGAGGGCTTCCTGTC---CTAGACGCTCTCCTGAGGTATCCCCGAGTGAGGGCAAGAACTGTAGAAAAGGAATG---TGAGAGGGAGATGGGGCTCTGGGGGCATTCTCCCTGCCTTTTCTAGAGAGGAGTAGAGGGTGATGGGAAGAG------GTGAGTGAGGTGAGAGGAGGGCAGAGTTCAAAGAGCAGGAGGTGTGTCTTTGTCATGAGATGAAAGAGCCAGGGGCACTTTAGCAGTGATAGTGAGAAGAAATAAGGCCTTGCTGCTTGTAAGTGATGGGGCCTTTTAGTGGACTTACTGTAGCCTGGAGCACAGAACTTTTGTAAACCACGCTTTCCTCTTGGTTTAAATGATGACACAGAGAGGAGCTGAGGAATTGTGTAGATTCAAGTGAGGAAAGGACAAGAGGT---AGGAGGCACGTGAAAGGAGAAGGACTCGATAATTAta-gcaaac-caaacaaaacctgTATAGCCATGGACGTGGGTTAATCCTGCGATGGAACGCAGTCCCATTCAGCTATGTGTAACAAAAG-----AATTAgaattttatttgattaaaaacATTGAG-------------------------GCAAAAAATCAAGGGGTA-----TAAGGCAG------GATAAggtttgataatatt---------ttattaaaaatactgaacaatacagtatatttcagtagttttacattatgtg-----tataaaaataac-----ttttcaaatg-------------TCTGAAGCTatggaagtagctcagtggtacagcacttgcctagcctgTCTGAAGTCTgaag----tttgatcccagcacctTAAAGAAGGTCTG-GAGAATTACATCCCTAGGTTATCATAGTGCCACCTCtgagaaaatgaagaggaaacaAGATCAGTACTAGTGGTAATCAGgggatatttt--------------------aacttttaaaagtatttgaagTGTGAATTCTAAGTCAATATTACCATGTTTGGAATATTTCTGAAGCCATAGTTTAGCAGCCCTTGGAGAAGAGCCTGTTAAGCAATGGCTCAGACGCAGGGAACTAGC---CCTGGACTCAGCAGCTGAATGCCTTGATGTGGGAGAGTCTGGCGTTCAGGCGAGTCAGCAGTGTAGACGTCTGGGAGATCGAAGTCGGCTGGCGTGAAGTGAATCATTGGTAGTCACAC---CTTAGACA-GGCATCAATAATTTAGCATTTATTAATCACCATCTTCAGACCAGATCTATTTTAGATACAC-----AGGAGAttga---------tttaaaagaat-aaaagatgaatGAATGATATTTTTGCCCTTGGCCTGAAAACCAGGTCAGGCCCTC-----ATCTTTTCTGCCTTGACTGTTACATCTGGACTCCCTGCCTCTAGA--CTTGGTGTCTGCTCT-TCCTCTGGCT-CCAACAGAGGGGTGGTGCAG-AGCACAAAGCCAGTCTTTGTCTATATCTAC-------TCTTTCTCAACTCTCCCTGTCCCAGAGGAGGCATTTGACTTTACTGAAGTGCCTCTCA-TCCTCTTTTCTGCCTGGCTTTGTTGTGCGCTCTGATCCTGTGACC-ACCTTGGGCAACTTTTTGCTCAACGTGGAACGTACGTGAAGTTTTCATGTGACACATCCTGTCCTTCCCCTTGTGTTCTTTGGAACTCAGTTCAGATTCACT-----------GTTTCTGGGAAGCCTCTTTGGACCTTCTGTCCTTCTGAGAAGGCTTAACCTTGCAGTGGGCACCTCATTGCC-TTTGTACTGTGTTGTACAGTG------ATCATTAGTTGTGGGGATGTATCAGCTTAGATCGAAATTATACCTTAATCATCTGTCTTTCACAGTT

a score=18703
s chr3           101421108 2462 + 160039680 TGCTCAGTCATACATCTTGAACATAAAAAAAAAAAAAAAAAGGATTCTGTAGGAAGAGGTGTATGTCTCTGAATCCTAAGGCATGTTTCAAGAAATGAATGTGAGGTGTGTTGGCTGCTCCCTGGTCATGAACTGCTGAATCATGTCACCCTGAGCCAGGCTCA-CTAGGACTTTAACATA------------------------------------GCGAAGCTAATTAGGTGAC---------------TGATAGCAGCTGAGATAGATAACTT-----------CACTTGCCCAGAGACCATGGCTCTCTGG---------GGCCTTGAATAATTCTTTTGAGGGTCTTTTGAAATAGACAGGCTTTCCTCCTAGAATATATAACTATGCATATGATGCAATTATACATTTAATATTAGCCTTGGAAGGAGGAtatgtatgtatgtatgtatgtatAGCCTCAGGATGAGTTAGCTcttaactaataacaacaaatgttgacatttcagagcagtggtggggtatgggtggggtgcctctgtgactcgtgaatttagtagtagttca-------------ggcttggaggccctcaggaagcaacagcccagatcttctcaaggccagctggcatgggaaagattgactagggtt--ggaagatccactcttggtggctctgtccactgctaacaggttagtgtcggctggtggcaccaagcctcaggtgg---tccccatctggctgctttgatgtcctcac-ACAGACTATGTGGTCTGGGAAAGCAGGCAGATTCACCCTCAGAAGCTAAGTGCATGGTTTCTCCATTTCCTGTTTCCCAAAAGTCAGCTGAACTCAGCATGTCAggcaaagtatggagcccttagtgcagggccttggtgcttgccttgggcaccaccctcctggcacattgtgtttatgaacctggaaggcatccttatctaccactgaggggttctttttctcctcttcttagtttttgtttaagctggtctcactgtatagccctgacttgcccggaaccagctgtgtaggccaggctgggcctcaaactcggagggtctcctatttctgcctctgcctctgcttctgggagtgctgggattaaaggtgtgtaacaccatgcttggccatcactgaaggtttctgagtacggttttgttacatgggcatgcattattgaatcagtggctattggtgaccagacgtagtgtccag-cccctttgctgttcctgtaggtctgcgttggagctgaaattcccaacctgcaattcatggccaactttggcaacgc-------taaagagctaccttgagtcatctcattagcacaaaT-TCTGATGT-------CGAGGTTCACAGGATGCA---GAAGCGTCTTGTCATTCAT---AGTGCGAGGGAGTTAGGAGCTCAGGTCTTAGGGCATGGACTAAGTGTCTATGTAAGTGAAGCACATGCATATGTATATTGCATATATATGCATACATGGATTGCATGCAAATGCCTTTTATACTATACTAGTAGCTATAAAAGAAGTTTTATTCAGCAGTCAGGCATCATTTGTATTTTGGAGTAAAGCTTT----------------GGTTCACACGCCTT-GCAGAGGAGTG-----------CAGTATAAA-AAGGGAAATAAAA-TTACTTG---TCCTGTGGCCCAGGGTTTACCTTCTAGTCCTTTCTACAGA--------TGAGACTGGGTCTTTTCT-----CACTGCAGAAGTGGCATTCTGT------------ACCCAAAGGGTACAGAATGTCTGAAGTTATAATTGTTATTTTTTAAAGAAACAGTCCTCACGGGGAGGAGCCTACT---GTTGTAGACTAAG--------GGAGGTGGT------CCAGCAACTGCTGTGGGCAAAGTTGGGGACCTGGTCTGTTTGAAGGCAGCAGAAATTAGCATCGCAGAGACTTCCTGGGACATTGAAGAGTTTGATGTGAAAGGAGAATTGGTCTGTTGAAAATAAATTCACTTTATTTCTGTATCAAGCTGCACTCCCTGTTGCATAtggtggtgcatgcctggagtctcagcatttgagagcctgagccagaaggattgccaaaggttcaaaaccaacacttgtgtataacaagaccctgtctggaaaagaaaacaaaCGAAGACACACTTTCTAAGAACAGCCCTGTTTTTCAGGGACGAAGAGCTGTTTGTAAGGTGGGAGGGAAATGACAGAGATAGTTAACCAACCAACAGGTAGGGCTGG--CTGTAGCTAAGAACGGATA----GTTTGTTTATTTATCAGGATTGGTTGTCATCTGCTTTTGCTCTGCATGAGTTGCTCTGACCCAGCTGCCCTGGCTCATCTAGGCCACTCAACACTGT----TTTTCCTTGGTGTGTGTGTGTGTGTAGTATAGGATCCA----TGCTTGTTTAAGGTCGGTGAGCTGAATGCACTGTGGTTAAGCTCATTAT----------CAGATTGCATCAGACGGGGTCCAGCTGTTTTCTTTGGA----------CAAAAGGAGAATGGCA---------------CTTTGTGAAATCCTCAAAACTG-GGAGCTTAAAACTGTTGAGAGCTTTCAGTTAGAT-GTGTCCATTCATTTGGGAACCTGAGTGG
s HiC_scaffold_1 111420978 2219 - 233722169 TATTCAGTCATGTATCTTGAACCTATGAATT----------GGATCCTAAACCTAGAGGTAAAGGCCT--GAACC--AAAGCATACTCCAGTAACTAAATGAAAAGCTCAGcatcc-tttcctgctcactaTTTGCTGAGTCATAATATTCCTAGCCAGGCTCATCTGGGACTCCAGCACAAAACATTTGGGAGCATCCTTAGACACACAATATCTTGAAAAACTGGTTAAGTGGTATCATGTGTTTGTGTGGCCAGAAACTGTCAAACTCAATCTGAAAGGACATGAACTTATTTATTAATCTTgactttttaatcttcttttgtATTTGAAT----TCTTTAAggatattttgaaatacacagaTCCTTTTCCAGGagaatacacacatatatgtgacATTATTTTACATTCAAT------CTTGGAA-------------------------------CCTGAGGGTATCTT---TATTAATTTATGACAATGAACTTTTA-------------TTATTGCACATGGG--------CTCCGTGGCTTTGGAATTCAGTAACACTTCACCTGGATGCTTGTGGCATAGAAGCTCCCAGGAGATGGCAGCCCAGACATCCTCAGGGACTGCTGTCACTTGAAGACCTGACTGGAGCCCAGGGGGACTCA------GTAGC-ATACAGGGTACTGGCAGCTTAGTATTAGCTGG-AACAAGAGGCTGTTTGTGAAATTCCCTGTTAGACTGTTTTGGTGTCCCTGCTGCAGCATGTGGCATTTGG---------------CAATCTTAGGAGT----------------------------------ATGTGATCTGAA---------------AGAGCAAGGAG-----------AAACCCCAGTGTCT--------------CCCCATGGCCCACCAT-----TGAA----------GTCCCT---CACCACTG----------TTGCTGCATTTCCT-------------GTTGGCCACACAAGTCAGCTCTGA--TGAGTTGATACGGCAATGTATAT--GGTTGGGGCT--AGTGCAGAGG--------------CCTCTG--TATGTTCACTAACACAATAAGACTAC------------CCACCCGTGGTCA------AGGGTTTCTACCTGGAGTTTCATTCCATGGGT-TGATTGGTTAAATCATTGGCCTTTGATGGTTAAACTCAGTTTCCAGACCCCTGCCCTGTCCCTGGAGGTCTGGGGTAGGGCTGAACTTTTTAGCT---AAGTC-TAGCCAGGTCTTTCCATGAAACCATGTAAGGGCTCACTTTGAATTATGGTATTAATGTAAGTCTCTGGTATGGCCCAAAGAGGTtcattatatatatgaaaaggCTCCAGTCATTCAGGAAATTCCAAGAGATGTGAGAGCTCAGAGC------CAGGAAATAGG---------------GGCAAA---ATATGTATAGT------------------------------------TATTATAGTATAGTAGTGAATGCAGAAGAAATTTTATACAGCTAtcactgattatttttatttttggttaaatttttttctagttgtaaAACTAGGCCATATTCTTTTGCAGAGGattgggaaaggaagaaaatataaagaagaaaaatagaagttaTTTGGTACCCTATCacctagtattttatttttattcctttttacatAACTATATATaatactttgatttttctttttacattacaGAAGTAGTAGTTGCTTATTGCATAGTAATACAGAGAGGGCAGAATGTCTAAAGTTA-----GTTATTTTTTGAAAACGTGGCCCTGCCCAGGAAGAGCCTTCCTTGGTCACACACTAGGAAGAAGATGGAAGGGGCACAGAGCCAGGGGATGCCTTGGGCAGGGCCGGG-ACCTGGTCACTCTAAGGGCGACA--AGTCAGTACAGCGGGGCCGAACCAGCAGAGGGACGCG------GCCAGGGCAGAGT------GTGGAGAGGAAATG-----------------AAGCT-------------------------------------CTCAG---------------GACAGAAGAGTT-----------AATTTTTACTGTTATGT---------------------------------TAAGATCTACTTTCTAAGGATAGCACTATTTT-CAGAGATCAAAGGCTGT----AGAATGGGAGGCAAATAA-GGAAATACTTAATAAAC----AGGTACAGGTGAGTATGTGGTTAAAGCACAATTCTGTATTTGTGTACTTGTCAGGG-----------CTGCTTCTG-GCTGAACAAGTTGTCTTGACCCAGCTGCCCTGGCTCCTTCAGGCCACTTAACACTGTTTACTTCTCCCAGGGGTG-GGATACATGTGATCT---GCCCACAAGTGCTTTTATAAGGTCTGCAAATAGAATGCACTCAAGTTAGACACATTATTGTATAATAATGGGTTCTAACTGCTGGGTCTCAGGTACTTTCTTTGGATCAAGAAAGGCAAGAGGAGAGTAAAATTTCTCGAGCCTAATCTTTGCAGAATCTCTAGAGTGGAGGAGCCTAAAGCCATTCAGAGCCTCAAGTTAGGGAATGTTCTTGCGTTTGATCACCTGGCTGG

a score=69754
s chr3           101424308 2438 + 160039680 tctgttttctattgctgtaacaaagtacctaaagtggagtgttttattttaaaaggagggattttgttttttagcccacaggt---------aaaggccaaagactgttggttggcccttgtgttctgcttctggtgagggcctccttgactgtgtcactacaaggcagatggtatcctggcaggaaaaggtgccg-tcttatggtgaggcaggaagccagggaTGGAGGATTTGAA--------------------------TATGTAGGT-------------------GTATGTGTGTATGAACCCTTGTGAGG----------------------------------------------------------------------------------------------------CACA-----CTTAGACCTTGCCCAAAGAAGCGTTGCAAATGACATGGGATGAGAAACTTGGATCTCCGTATTTAATTTTTGCCCTTGCAAGAGGATGCAGCGTGAGGAA---CGTGGGGAGGGTAAGCAGGAGGAGTCGTGACCTTGGAAAGC-TGTGTCACACCAGAAGGCAGGGGCTTGGTGGGCCAGTCAGAGCCA--GGAGCCCAAGGGCAC------CGACCTTGTTTCAGATCTTCCTGCACACTGTCCCTCTCTGC-TTTGTCAGCTGGTGGGACTCTGCGCG-----------------CCTTCCCACTCCTG-GTC-----ACTC-------CTTGGAAACTGACAGCCGTGGTAGGATCTG---TTTGCCTCTCTTTCTACAGGGAAAAAGGA----GGTGCTCCTTAGGATAGGAT--GGAAAT-----------AAAATGGAGTGCCCCTCCCAAGTCGTGCCCCAGTAAAAAGACTCAATGGCTTTCTTGGGCCAACCCCACTAATCATGGGAGAAATGTTTAATTTCAGCCAGATTACAAGGCGGCTGCTTTTATTTGTTTTTTTCCTGGATTTGTGCCAAGGACTCAACTTTTCCTGTTCATTTTATTAAAAAGTTTATAAACAGCGTTAATAAATAGATATAAAGCTGCCGTATAAATGACAGCGAGCCCAAATGAAATTCACAAGGGTCAG-TGTTGAATAAGTAACAGAGCCATGTCCTTGCGCGATCAAATTCCCATATATGCAAATTAGACGCAGAGCTTTACCACGCTGttttaattaatatttataaatCACAAAGTGCCTTGGAAAGGGCCAGTAACCTACTTATACTGCCATCATGTCACACAAATAACAAATCCTCTGGGGACTGCTGTCTGTTTTGCATTCAG-TCAGAAAAGTAAGCACGTTGCTGTGTCTGTCTCCCCT-TAGGTGTGGTGTCAGCGCAGCGACAGGTCACCGTCCAGGAAGGGCCCTTGTACCGCACAGAGAGCTCCCACATCACCATCTGGTGCAACGTGAGTGGCTACCAGGGTCCCTCTGAGCAGAACTTCCAGTGGTCCATTTACCTGCCCTCTGCTCCTGAGCGTGAAGTACAGATCGTTAGCACGGTGGACTCTTCCTTCCCGTACGCCATCTACACCCAGCGAGTCCGCGGTGGGAAGATCTACGTGGAGAGGATCCAGGGCAACTCAGCCTTACTTCACATCACAGACCTGCAAGCCCGGGATGCCGGCGAGTATGAATGTCACACCCCCAACACCGATGAGCGCTACTTTGGGAGTTACAGTGCCAAGATGAACCTAGTGGGTAAGTGACT-CTGCCTCCACATGGCCAGTGTCAGGCCCCAGTCCCTCCCTC----ATGTGCTTTTGTTGCCTAT------------------------CGATATGATTCCCCAGACACCTTAGAAAACCGCATGAGGGAGCATGAGTGACCATGAATCCTAAGTACACTTGTGAACCCTGGATGGCTAAGGCTGACACAT--GGAAAGTTCTTGTGCAAGCATCAATCACCACAGTGGTTAAGCAGACCTTTGCTGGTGAAAGGCAAAATGAATTTATCAAGGCCAGATccaggtgtggtggcttcatgcctataatcccagcatccagaaggctgaggcaggggactaccctgtgacaaggacatttgtgggtgataatTTGAAGATGTGACTTGGAAGGGAAAGTGGGTGAGACCAGCAGGAAGAGCGGCAACACCCCAGATTTAAGCAAGGGCAAA-----------ACTCCCAGCG--TGAGGCGACAGTAG---ACACACAGGGACAGGAGGATCATTACAGGAGTGCAGtaatgtgtgtgaggggaatctcaggggagtggctgctcagataacacacagagagttccaga--------------tgctcagaggggagagacaacaagcagggggtgggaccattttgaggtgtcacaggtgattttagtgaaccacccaggcggtttgtcagacagcggt-aatggttctttttgggaa----------cagagacagacaatagcttgtgactgaagctgcccatgtacagtgtgttctttaatttccttgtcggtagataggagtttaatGAGTGAAAGCT-------------------------TTTTCAGCAGGCCTGTTCTGTTTTTTGGGTAGACAGG---CACTGGAATATTTCTTCTTACAGCATCCACCACCATGCAAAGACTTACTTTAATGTGACGTAATCAGCAAACAAGCGTCCCTGTTTTGGGATGTAATTCCCTGGACTCC--ACTCCTCAGGAG
s HiC_scaffold_1 111425121 2576 - 233722169 tccattttctatttctataacaATGTACCTGAGCCTGGGTACTTTAGTTTTAAAAG---------GttgtttagctcatagtttgaGAGAACAGAAGTCTGAGACTGTTGA----CCCATGTGTTTTGCTTCTGCTGAGGGGCCCCCGG--CACATCATAGCAACGTGGATGGTATCATGGCAGGAATGTGTGCAGGTCACGTGGTAGGACAGGAAGCCCGCTGCAGAGGGCctggtctttctgtttttgtaacaACTACTTTTGTGTAAGTTAAAGAGGACCTGAGACCAGTAT-TATTTATTATCCCTTTTGTGGGCAGCATCCCAGTGTCCAGTGACCTCAGTATGGTACACAAGGCCCCATCTCTTGAAGATCCCACCACCTCTCACTTCATCACATGAGGGCCAGCTTCTAGCACATGAGCCTCTGACTATACTCAGATAGG---GGCAGGTGGGGTAGAATGAGAACCTGGACTCAGCATATTGTGTCTTTGCCCCAGCAAG-GGATACCATGTGAAAAAGCACggggggaaggcaggcaggag------tgACCTTCATGACCACATCTCAGCCGGAAAGGTTGGGA--TGATGG---AGTCATAGTGAATGAGAACTGAGGACGTAGGGTGTGAGCCTGTTACAGGT-TTGCTCTGCATTGTCCATTTCCCCCTTTGGCAGTTGGTGGGAGTCTGGGCAGCAGGATCTGCTTCGGCCCTTCACATTCCTGTGTCCGTGTGCTCGGCTTAATTTGGTAGCAAGCAGC--TTGCAGGAGCTCCACTCTGCCTCCATTTATGGAAGGAAGAGGAACAAGGATGCCCCTT-GGATGGGGTTGGGGAGTGGCTACACTGGAAAATGAAG----------AGGGCA-GCCCCCATATAAGGGCTTTAAGACTCTCCCCAGCGGGGCTC-CTTATCAAGGAGGCAATGTTTAATT-CAGCTACATTGCGAGAtggttgcttttgttt-----tcatctgAATCTGTGCCAAGGATTCAacttgttctgtttattttattaaaaactttataAACAGCATTAATAAATAGATGGAAAGCTGCTGCATAAATGACAGAGGGACTAAATGAAACTCACAAGGGTCAGCTGTTGAATAAATAACAAATCCATGTCCTTGTACCATCAAATTCCTATATATGCAAATTAGAGACAGTGGTTTACCAGAgtgttttaattaatatttataaatcacaGAGCACCTCTGAGAGGGCCAGTAAGCTCTTTATATTATTATCATGTCACACA--TAACAAATCCTCAGGAGATTGCTGCCTGTTTTGCATTTAGGTCTGA---GCAAGCATGTTG-----TATGTCTCCCCTGTAGGTATGGTAGCAGCACAACGCCAGGTCACCGTCCAGGAAGGACCCTTGTATCGCACAGAGGGCTCCCACATCACCATCTGGTGCAATGTGAGTGGCTACCAGGGACCATCAGAGCAGCAATTCCAGTGGTCCATTTATCTGCCCTCTGCCCCTGAGCGCGAGGTGCAGATTGTCAGCACCATGGACTCTTCCTTCCCGTATGCAATCTACACCCAGCGTGTCCGCAGTGGGAAGATCTACGTGGAGAGGATCCAAGGCAATTCAGCTTTATTGCACATCACAGATCTCCAAGCCCGGGACGCAGGGGAGTATGAATGCCACACGCCCAACACTGACGAGCGGTACTTTGGGAGTTACAGTGCAAAGATGAACCTAGCGGGTAAGGAAATGCTGTTTCCATGTGGCTAGTGCCA-GCCAAAGTCTCTTCTTTCATAGCGTACCTCTGTTTTGTACCATGCGTTTGACTTAAAAATAAGACAGCAAGACTCCTCAGATATTTTAAAGGTCAAC---AGGTAGCACAAGTAAACAAAATTTCTGTTCTCACCTGTTAGTAATAAAAGCTTGAAGCTGAAACTGTAAAAAAGATCTAATGAACATGTTAAAAGATTCAGAGGTTATTAATGGTGGCGCTGGTGAATGGGAATATGAAAATAT--------------------------------------------------------------AGGGG-------------AAAGACATTT----GTGATAATCTGAAAAAATAACGTGGAAGATAAAAC-TATAAAGTCAGCTGAAAGAGAGGCAAAA--CCATATACAGGCCAAGAAAAACTGCCATGCTCATCCCCAAAGGCTGAAATGAATGAAGGGTAGATAAATTAATTGGAAAATAGTTGCACAAACATGTTAATGTGCATTGGGAGAAGTGTAGGGGAGTGACTTCCCAG-TAAC---CAGTGATGTCCAGGCTTATAGACCCTTCTTCATAGTGTGGAGGG-----AGGCAAGGAATGAGACAGGTTTGAG--------GGTG-----AATGAACTGACAATGC------TCAGCTAATAGCAAATGGTGCTTTTTGGAAATTGAACGGACTAGAGATGTACAAT---TCGTGACAGAATCTGTCCAGGTG-GTTACATCCTTTAATCTTCCTCCCTGCAGACATGAGTTCAGTTAATGAAAACtcaggaaaaggaacaaaggtAATTACTTTCTCCTTTGTCAGGTCTGGTCTTTAGGTAGATAGGGGATATCAGACAAAATTTTCCG--AGCATCTACTGCTCCTCATGGGCCCTGTTTA-----AAATACTCAGCATGCCA-CGTCACTA-TTTGGGGTGAAATTCCATGGAGTCCTTACCTCTCAGAAG

a score=60776
s chr3           101426738 2999 + 160039680 CTCAGGAGCCATTCCTG----------GGTCAGAAGTGAGGTTGAGCTATCTCAAAGTGATACC-----CAACAAGGAATCTTACTAGATGTCAGC---AGTTGTTCTTACACAGTATTCTCGGAGAGCTCTTCTCATACATTTTCTAAGAAAATCCACCTTTGCTCTGAGCGTCATTAAGATCCCAA----GCAAGTGTCAGTGCCAAAAA----------------------------------ATACTGCC--------CCTGTTGTGGC----------------------GTTAACAGTGGTTTCTGT-------------GTGGAGTGAG--------------------TCTCAGATTCTATAGCACTGTGACCTCCCTCCATGGGAACATTCTATTTTACAGTGATCCCAGATTCTCTGCAGACCACGGCTGTCCCCCAGACACTGCACAAAGTGGAACAGGATCCCCTGGAGCTCAGCTGCGAAGTGGCCACCGAGACCGTCCAGCACACCCACCTCTCGGTATCCTGGCTGCGGCAGAAGGGTGGCGAGAACCCTGTGGAGGTCATTTCCCTGAGCCGAGACTTCATCCTGCACTCCAGCAGCGAATATGCCCAGAGGCAGAGCCTGGGCGAGGTGCGGCTGGACAAGCTGGGGAGAAGCACCTTTCGTCTCACCATCTTCCACCTGCAGCCTTCCGACCAGGGCGAGTTCTACTGCGAGGCTGCGGAGTGGATCCAGGATCCAGATGGCTCTTGGTACGCCATGACCAGGAAGCGCTCCGAGGGTGCCGTGGTCAACGTCCAGCCCACTGGTCAGTGTCCCTCAGCT------TCTTGTCCTTCACCTGGTGGGGA----GTCAGATGCTAGGAGGTTGTGGGGACGCCTTGTTTGATGACC-ATAGCAATATGGTAGGGTTTTGAGTGAGGTTAGAGATAGTTGTAGCCTAGGCTGAGGGAAACAG-----------GTACATAGTCCC----------AGCTTCCAGCGAGCTGCATACA---GCTGCCCATACTGGCCTCTGCTCATTGTCATGTTTGCTCTACTAGATGGTGTCGTAAATATTTTATCTTGAATAAAACTTTTTTTAATGAGAGTTTTTTTCAAAAAAACAAAAAAAAAAgggactgcagagatagtttagtggtcaaaaacatttgttgctcttgcagaggacccaggttcaagtcctagctcctacatggtggtccacacaattattcctaacttcattaccagggtctcctttgctctcttttgatctccgagcacacatgtgatacacacatgcaggcaaaacacacataAAAAGAGTACATCGTTGTTTAAAAAAATATAAAAGTGAGTGATTTTACAGAAAATCTT--TGTCTTATGACTCTGGGTTCTTATTCCTGTTAGCCATGGATGCCACTCCGTGTGATGATGTTG-------------------------CAGTTACAGAGGGCATTTGAGATGATGAGCCTTTTCTGTTGGATGCCTGAGACAGCGAGCTAAGGAGATGTTAGTGTACCGTTATTTTTATAGTAATATTTCTGCCATTTTAAACAAGACTTCTGAAATGCTTTAACGTACATTGTCA-TGTCTGTAAGGCAAGTC-------------ACAATGGCATCCACACATTGTGGGTGAGCATGCTGGATGCAGAGTACCCTGTGGTGTGACCCCAGAGTGTGTGCC-----------ATGTGGCCAGTGTGGAGTATTAGGTCCTGCTGTGGACACTCTGTCAAGGGAAGACCTGGGTAGGTTTCCCAAGGGGGAAAGAATAGTATGTTTAGAGCTGAGGTAATGGTGGTGGTTGTAGAAATTTTTttttttttttttgagacagggtttctctgtgtagccctggctgtcctggagctcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctggttgtagaaatttttaatcccagtccggggtttttaccccacgttgattatttagttTGGTGGCCTGGCACACTATATCCCCACAGCTTCTTTGGATGTCTCCTGTGACT-----CTGTGTTCGTCCCTAGTTCTTGTGCCTACAGGGTTCCAGTTTTGAGCTGACGGCAGCTGTTGATGACATTGGCTGAGCTTG--GGCAGGTTCTCCGGCTAAGCTGTGGGTCTGACTTGGT-TGGAGGGCAATCATAATACAGTTACTGAGGT----------GGCTGTGGAGGGCTTTTTCTCT-----------TCTCTGATGAGGAGAATGAC-GCCTTCATGTTATAAGCG------------------GTAGTACTCCTGTCAGAACCTGCCTGTCTCTTGTCCTCCTTGTCC----TGGTGGTCAGTTGCCTTGGTCTGTGCATGGTA-CTCTGACATTTGAGAC-AATGCTTCAGAGTCACCAAATAGTAAACTTT--GGGACACACCCCTGAAGTCCCTGTTCGGAGACTCCTGGCGAGGCTGGGAAGCTGTGCCTTAAGTA---TTCCCTGGT-CTTTCTTCACCTGTCTACATTTTATCTTGACACAGCTCTGAAGGGGGCAGGGCTTATAGGATCCTCTGGACACCTAATGGATGTGAGA---GCAAAAGAAGATTGTATCCTGGTGAGAGGGCACACTTGATCCACACT-TAGGACTCAGAGCTCTTACTGTCTTCTGAATCTTCTAATATTAAGAAATTTACCCAAGAGGCTTTAGTTCCTGTTTATCGGTTTCCTTACTGGTTGGTTTTAAGATCAGTGTCAAAAAAGTCTGGGCCTAATTTCCAGTCTTAATG-CTTTTAAATTAGGTTGCATCAGCTAATCTTCTTTATTTTAATCTTACCAATTTGGAATTAGGAC-ATTTGAATTTGCCCTGTAAATGTATCCAGACTGAGCTAAGAA-AGGAAAACTCTAATGGAAGTGAAAAAATGTTGATAGCTCCACTGTGTGTTCCAGT-TCAAACTGAGGAGTTGCAACTCCGCCTTGGAGTCTGTTTCTTCATGTTTATTTTAATAGA----CATTAGTCTTTACAGCACTGAAGGTGTCGTGCGAGGCATTCAGGGATGCCAAGATGCACGACATCGGTCTGTGTACTTAAGGTGCT-------------------------------------AAGTGCTGT---------------------------------GTGAATACTGAAGGCTGTTTTTGCTCTATGTTTTCTCTGGATAAGATGGCTATTACAACAGATCTAGGAATTCTAGTTCCTCAGTAGGCTTGAGCTGTGTCAAGGTTG
s HiC_scaffold_1 111428420 2833 - 233722169 CTAAGGAGCCCTTTCTCTTTGAAGATCAGCCAGAGGGAAAGTGCAAGTATTTCAGAGCAATACTAAAGTCAACAACAAATCTTAATAAgcctaaaagaaaattattctgaCACAGTATTTTTCAGGAAGCCTGTTTATCAGTT--------AAACTTTCAATATGTTTGAgcattattaaaatatcaaaaaggtAATTTTAAGTGccaaaaagatacattaaaacTGCGttatacattaaaacaaaatcttGCCGTTGTGTGCCTTTCGGGGCTATCTGTCACCCTGAACTGCCTGTCAGAGGTGGTCTCTGTTGGGGTCACCTGCATGGAGTGGGAGTCTTGCCCCTTGTGGATCTCTCAGATGCTTTGTCTTTCTGACCACATGCTCTCGGGACATTTTGTGTTTCAGTGATCCCAGACTCCCTGCAGACCACTGCAGTGCCCCAGACTCTGCACAAAGTGGAGCAGGACCCGCTGGAGCTCAGCTGCGAGGTGGTCACAGAAACGTTCCAGCACAGTCACCTGTCTGTGGCCTGGCTCCGGCAGAAAGGTGGCGAGAAGCCTGTGGAAGTCATTTCCCTGAGCCGGGACTTCGTGCTGCAGTCCAGCAGCGAATATGCCCTGAGACAGAGCCTGGGAGAAGTGCGGCTGGACAAGCTGGGGAGGACCACCTTCCGTCTCACCATCTTTCACCTACAGCCTTCTGACCAGGGCGAGTTCTATTGTGAGGCCGCGGAGTGGATCCAGGATCCTGATGGGTCGTGGTATGCCATGACCCGGAAGCGCTCTGAGGGTGCTGTGGTCAACATACAGCCCACTGGTCAGTCTCCTCGAACTTGTTTCTCTTGTACTTTTGCAGATGGGCGGACTGTCAGACACTTGGAGGGTGTGCAGACACTGCCTTTGGTGACCTATAGTAGTAct---ggtttccagatgaatttggaGATGGTCCTGACTTTAGCCAGAAGACACTGTGGGATGTACTGAATGCAGTCTCCTAAGACTTAGTCTTCCAGGAAATCACAGATAGGTGCTGCTCACACTGAATCCtgcctattgtcttgttttcctta-----------------------------------------TCTGAAGAGCGTTT--------------------------------------------------------------------------------------------------------------CACA---------------------------------------TCTTTTA-------------------------------AAGCAAGAAACAT------------------------------TGAAAAGTTGAAAGATTTCACAGGAGCTGCTCATATCTCGTGTCTCTGGGTTTCCGTTCCTATTAGACATAGGCACTGCCCAGTTTGGTACCCTTGCCACCTTCAGGTACCAAcctattttcatttgtaaaaggCAGTTGAGATTATGAACCTGCCATTATAGCTA--TAAAATTATGAACCCTGGAAATGT--Gggttacattatttttat--taatatttcca----tAGAGGTATAATCTCCAAAATGCTTTATCACATTTTGTCACTGTTGCTTAGGATGGCCTGGAGATATGTAGGTAGTGGCATTCCTGTTTCATAGGTGCTGATGCTGAATGCAGAGGATTTCAGGG-----CCCCAGGCAGAGTCACTCTGTTGATGAACCTGTCCAG---AGAGTACCAGGTCCTACCATAGATGTCTTCTCCAGAGAATACCT-GATGGGAATCCCTGAGGAGGCTGAGTGATGTGTTTAGAGCTGG---------------------------------------------------------------------------------CACCTTAGAGA----GCTG--------------------------------------------------CAGTC-----------------------------------------------------CTCCCTGGCTTCCTTTGATGTCTCCCATGACTCCAGACTCCATTCCATGCTCACTCCTGAGCTTTCGGAGCTCGGAGTCAGAGCTGACAGATGTTGCTCTTG-CCTTTGCTGGATTGGGAGGTAGGTTCTCC-CTTGTACCATCAGTCT--CTAGCTCTGGAAGGTAGTCATTGTGCTCCTAGTAAGGTATACCAGGTGGACTGT---GAGTCTTTCCTTTGTTGGTGCTTCTTTTTGGTGAGGGCGATGGCAGTCTTGGTAAGAGAATAGAGAATTGTGGGTTACCGTGGAGTCCTCGCGATAGAAAATGTCAGTTCAT----CTCCTTGTCCCCTTTGCTAGTCAGTTTTGAGGGTCTTTGCATGGTGTCTCTGATATTCAAGCCTAGTGCTTCACACGCTCTTAATAGAGTACTTCCAGGGCCTCATCCCAGAAGTTC------------------TGAGTCCAGGCAGCTGGATGTTCAGTGCACTTACCAGGTGATTGCTTCTGTTGCCTACATTTTATCTGGA-ATAGCTCTAGAGGGAATAAGGCAGAGGAGATTCTGAGGGAAGCTAATGGATGTCATGCTTTCACCAGAGGATTGGATTCC--TGGATAGGAACACTTCATCAGCTCTATAGGACCGAGAACTTTTAGCAACTTCTGGATCTTCTGGTATTAAGAAGCCTACTGAAGAAgctttatttcctatttatcaTTTTCCTTGCTGGATGGTTTAAAGATCAGCTTC--AAAAGTCTGAACCAAATTTTAAgtcttaatgttttttaaattaggttgCATCAGTTAAtcttctttattttaatcttACCCATTCGGAATTAGGGCTTTTTGAATTTACCCTCCAAATGTATCCAAGCTAAGCCAGCAAGGGGGAAGatttaatgaaag---gaaaagggTAGTGACTTGACTCTGCA--CTGGTCTCAAGCTCAGTGGTCTCATATCCAACTT----TACCCTTCTTTTACTTCACTTCAGTAAACTGTCATCAGTCTCAATAGCACTAAAAGTGTGGTGTGAGGCACTAGGGGAGGCAGAGATGAGTAACCTAGCTCCCTGCACTTGAGGTGCTTGTAGACCCGAGGATCAGTGGCCAAGTAGGAAGTACAAAGTGCTGTAATGACATCTGACCACAGTGCTTTGGGAACACAGTAAATA-TGAAGGTTCTTgctcttttaagtttttcttggGTGGAATAGTTGTTA-GGCAAATCCAGTAACTCTTGGAAGTGTAATGACTTGAGTGGTCTCAACATTG

a score=174298
s chr3           101430948 4804 + 160039680 [encoded data, 5281 characters]
s HiC_scaffold_1 111433549 5022 - 233722169 [encoded data, 5281 characters]

a score=62179
s chr3           101436468 4944 + 160039680 [encoded data, 5753 characters]
s HiC_scaffold_1 111439229 5085 - 233722169 [encoded data, 5753 characters]

a score=6186
s chr3           101441529 141 + 160039680 ACTGCAGAGTTAGGACTGTCTTCCTGTGTCATGCTCAGGGAATGGAGGGGTCTAG-GGAGGGGCAGGTCC--CACTTTGCAAACTTGGACTGCCATTGAGAAGGCTGAATCCAGCAACGGCATCTGCCTGAGCATCCCCCTGAC
s HiC_scaffold_1 111442161 140 - 233722169 ACTGTTGAGTT----CCATGATCTGGTGACCTTCACACGGGATGGAGGGGTCCAGTGGGGAGACAGGTCCTCCACCTTCCGAACCCGAACTGCCATCGAGAAGGCTGAGTCCAGCAACAATGTCCGCCTGAGCATCAGCCGGGC

a score=46662
s chr3           101442800 2267 + 160039680 TGTGTGGCTGTCTGCAGTGTAAATGCCTTACTTCTGATAACTTAACTTGATTTTTCCTTAAT----CCATGCAGGGTCAATGGGTGTGTGGTGCCTGACGCAGCttacagatggggactctgccacccagggtgaataagttgcccaatgattcatgatgagtggcagagccaggattcaagtccaaacaggcggtctggctccagagctaaaatt-ttaattttattatat-----actCTGTAGACAGTGAGCCAAAGTTTTACTGACTTACGCTTTCTTCTCTCCCTAGTAGCCTATGGTACAgtgtgtatatgcatgcgtgttagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagagagggagagggagggagagagagaTGGAATGAAGGGCTTGGTGTATGC-AAGCAAGCATTCTCCTCCTGGGGTGC----------------CAGGCACCAGGCATTTTCCTTGAGTGGACACTCTGGTTTGTGGTCTGGGTTCCCTGAGTCTTGG-TTTTGTAGCATTAAGGCCACAAAGCATTTGGAGCTTCGTTGAGGCATAAGTTGTTAAAGA---TGAAACCAAATATCTACCTCTTTTGGGTTCCTTTATTTCTTCTAACTTCTGCCACAAGGTGGCTCTAGGACCAGGGAA------------AAGCAGGGCAAGCCTCCTCAGTCCCACCCTCCCTGTGGAGCCTGCCTCTCCAAGCCTGGTTT----------AGCATCTTCCCC---TAATGAATATCTTAGTGAATGTTCTTATCTGAGGAGAATCACCAGGGAGCCCAGGCTCCGGTGACTAGCTCAGAGCCCAGGCACCAGTGACTAGCTCAGACCATTTACCATCGGCTTCCACTGCTGCAAAGAAGGCCTTTGTCCCT------GTTCCATTCCATTCTGTGCGGCCTGTACCCAGACTGCTTTCTGCCAGAGCCACTGGTGGGGACTG----CAGCGTGGCTGTTCTCTCCATTAAGCTCTCTGGTTAGCTGGCGTGGGCGCCTTGCCATCAGAAGTGACTTGCCGCGGATTTATCATTGGCTACTTCCAATCCATAAGCATGCCATGGATCCTAGG-----ATCCCCAAGGCGATC-------GATCCATAGTTAGCCTCCCTTTCTTCCCTTGATTTAGTCTGGTCCTACCCC---------ATACTATGACCCCATGGAGCACTGAGGCAAGACTT--GGTCAGTTTGAGGTGTTCCATTCTCGTTCAGTTTTTTC---TTTTAGTTGTGAAGCATCATCTTGCTTCCTTCTGAGTTTCTTCAGTTCCAAAAAACACCCTCCAATTTCACATGGCTAAATACAGAAGCAGTAAGGGAAATGTCAGCACTCACTTTGCAAATGTTTACGACTATCCCTCGGTCTAGCTATTAAATATTGTGCATTAAAATTGACAAAGCAATAAACAAGCCTCCAGGCAGGCAGCGTCCGGTGGTAGAAGGCTG-CTTGTCAGTGGGTGTATTCTGCTGGGATCAGACTGATGGGCAGTCGGAATGAATATTTAATGCCCTCTGCATGTTGCCAAATCTGTTTGCTTCATGTTCT-----CTGCTGACCTGGCAGATTGGGCTAGCCGA----------------------GAGTCTTGGGTATGTGAGCATGGGCTGTCCTGACCAGAG------AAGTGGCC--CTGCATTCTCCCT--GGGCAG-----CCTGGGTTCTCC------TTCCAACCCACGCAACTTCTGCCTGCCTGGTGTCTATGCAG-GGCTGGGCAAGCCTGAGTGAACAAGCCCTTAGAGAAGGTCTCAGCCCTCCATTCGTGCTTCAGCCTTGTTGCCATGGTGGCAGCAGGTGTCTGCCCGATGTCAGTTACTGGCGGCAGTCAGTCAGGGTCACTGCTCTGTCAGCATAAAGGTTGGGCAGGGTAGGGTGTGCCTGGGCTTCTCTCAGTTTGCTCTTT-TACTTCCCAACCCTTGCCGATTTCCCTctgccacctgcccctgcccctg-----ccacctgcccctgcGGGCATGTTTAAGCACCTGCT-GGCAT--GGTAGGTG-TGGGTG-TGTCACTGCAGGCGTGGGTGTGGCACACAGG--------------------ACTTCACCGTGGACTGT---------------GGATGGGAAAAG--------GGTTAGACCTTCCAGA-ATGGAGGTTGAACCAACACCGGGAATGGATGTGTGTGAGCCAGGAGGGCCCCGGTTCATTTTTGTTAAAGGTGAGGGTGAGCCACATGGCCT-GGTGGGAGTCCAAGTCTACCAGATCACTGGCTCTGTGACTGAGAAAGAAtcattctgaaattgggagtaata-tttacttgataggagtagtgaggagcatatagttaatatgtgtgaagcgcttaTGGTAG
s HiC_scaffold_1 111445907 2261 - 233722169 TGTGTGACCATCACAACCCTGAATGTTCTGATTTT-ATAACTTAA-TTGATTCTTTCTTACTAATTCTGTGCAGTGTC--TGAGAGGGTACCACCCCACCTAAGGTATAGATCAGAACACTGCC-CTGAGATTAAATAAATTGTGCAGTGATCTGTAACAACTGGCAAACCCAGGTTTCAA--------------TTTGACTCCAGAGAACaagttcttaattttattttaataggaaCTTTCTAAACAT---ACTACCGTATTCTTGATTAA-----TTTTTTCCCTCAGGAATCTTTTGGTAC--------CATGCATgcgtgc--------atgtatatgtgtgtgtgtgtgtgtgtacatgcgtgTGCGTGCACTG-----------------------GAGATTGAATGCAGGACATGTTACATGCTAGGcacatgctgtaccactgagctacaccttagcATGATGTATATATATAAGGCCTCCTCC-----------ATTTGGCTTAGCCCCCTGATTTCCTGGTCCTTAAATTTTATAGAAGTTGGGTTACAAAG----------TTCCTCAACACACAGGTTGCCAAGAGCATTAAAGTTTAACTTGTGACTCGTT-GAACTTCTTTATTTCCCTTAACTCCTGCCATAAGGTGGCTGTGAGACTTGGGGCTACCAGAACCTCAAACAGTGCCTGTCTCTTCA------CTGTTTCTGCATACCCTTCTCCTCAAAACATGGATTGTTAGAAATGACCCTGTCACCCATTTCAAGATTTATTTGTCAAATGTTCTTctctaaaaa-aatcaatgagaaacCTAGGACCCGT---------------------------------------CTGTGTTCCATCAGCTTCCACTGCAGTAATGTA-----TTGTCTCTCACCAAGGTGCTGTGTGGTCTGTGTGGTCACTGCCCAGGCTGCGCCCTGCCAGAGCCACCTGCTGAGCCTGACCACATCTTAAGAATTTAATTCTGTAGAATCCCAG-------------------------TTAGACTTGACTTGCCATAGATCTGTTGTTGAC-------ATTCTGTATGCATGCTTCCTCTTCTGTGTGCACATCCCCAAGGAAATCTTGAAGAAACGAATGCCCTCCCTCCTTTATTGTCATTGATTTAGCCTAGTCTTACTCCCATTGATGCACAGTGTGACCCCCAGGAGACATTTGGGAAGACTTTCAGGCAGTCCAACATGCTCTATACTTAatcaattttttcctcttttaattgtGAAGTATCACTTTGTTTCCTTATGCTTTTCTTTAGTTCCAAAGA-CACCCTCTAATTACACATTACTAAATACAGACACAATAAGGGAAATGTCAGCACTCATTTGCCAAATGTTTATGACCATATCTTGGTCTGGCTATTAAATATTGCACATTAAAATTGACAAAGCAATAAACAAGCTTCCAGGAGGACGGCCTCCGGTGGTGGAGAGCCACCTTGTCAGTGGGTGTATTCTGTTGGGATTGTACTGATGGGTAGTCAGGATGAATATTTAATACCCTCTCGATGTTGCCAAATtcgttttcttctctttcctattGCTGCTGACCTTGCAGATTGGTTTAGCTGAGGGCTTTTTCTTTGACTTACATGAGTCCAGTGCATGTGAACACTGGCCCTCCTTGTCACAGTGCACAAGGTAGCTGGCTGCCCCATCCCTCAGAGTAGTGGGCCCTGCTTTCTTCCGGGATTTCCATCCCA-GTGGCTTCTGCCTGT----TGTCTGTGTAGAGACAGAGTAAACAAGAGCACAGAAACCCTAAGAGGAAGTCCCAGCCCTCTTCCCGGCCAAAATCCTTGTTGTCACAATGACA------------------CTTGTTATTGGTGTCAATCAG-AAAGGTCACTACTCGGTCTGCACACAGAGAAGGCAGGGTCAGGTGTGTC-AGGTGTCCCCAAGTTAGGTGTTTCCACATTCAAGTCTGTGCTTCTTTCACCTTGT--CCAGTCCTttggtctgtctgtctatct--ctctgcaTTGATGTTTGAGCATCTGCTCTGCATCAGGTACTTGCTGGGTGCTGAGGCTTCAGAGATGGTTGTGTTATAGAAGCCAGCAGCTTGCCCCTTTCTGCTGCTTTGTGGACTGCCTAAAAGAGGTGGCAGGCTGTGCACAGAGGAGTGCAGTAAGGTTTCATAGATGTGGTGGCAAAGCCAGCAAAAGGAATGAGCACACACAAGCACAGGGCATTGCCAGGCATCGTGACTAAACACAAGGGCAGAGCAGGTGGGCTGGGTGGGAATTCTAG----CTGTACCACAGATGCAACCTCAGGCAGGCAACTCTGTTAAGGTGGGgggtaatattttatttcatagaaCACATGAGGACcaaatagttaatatttataaagtgCTTAGAATAG

a score=21238
s chr3           101446100 1481 + 160039680 TGGGGAAGAGCTTATTAGGGACTGGGTAGGTAGGTCCTGGCCATGTAGAGGGAGAAGAACAGG------------------AACATGGGCA-CTTCAAGTGCAGTGACTTCATGAGTGATGGGTACATTTTTCTGCTTGCTTCCCAGAGTGTACATGCATGTATATGTGTGCATTTTGAGTGAGGGGTGTCCCCAGAGCTCCCCATTGTCCCCTAATCTTCTGGTTGACCTGATTCCTTGAACTTGAAAGATCTTATCTGCCCCAGCCACTGGCTTCCTCCATCCCTGACATTCCCGTTAGATGTTTGAAAAAGAG-------------TCTCCCTTCCTTCTCTTCATTCTTTCCTGATCTC-TCCTTGACTCTCTTCTGCTCTTCCCTTGCTCTCTTGCATTGAATCCACCACACACAAGAGCCTG----------------------------------------------------CAGGCTCTC-------------AAACCCACAGGTCACTGGGAGTCATCTCTTACCCCC----ATTTCTCACCCAGTATAATTCTAACTTGCCAGGTAGCTGTGCCATCCACCAA---ATATT-CCCTAAGAGCCACAG-TGGGCAGAGTCAAGAACTGGTCCCG----CCCCCAGTCTTGGCCA--CTTCCCTTTCTGACATCATCCACCACACCTGAGAATCTGGCCTTG----------------------------TTGCCTGCTCTGGGTGATCTCTTC---CTTTTGTTCTTCATCTGTTGGACCCCAGCTCATTCATTTTTCAGAGCCCAGCTCAGGGATCACAGCTTTTTGCAAGGTTCTCTCTCTTTTATCACAGT--CGGAATTAATGACCCCTCTTTTA-AAAGATTAATTGGGTTTTTAATTCAATCACCTATTAGTTAATGTGATTAGCAATGATTGGTTCATAGTTCTTTT--------GCCCAGGCATTTGCAAAACGAGGAGTCCTTTTAAAAGTGGCCTTTGATGTAAGGCAGTTATGGCTGAGTTTAAGGAGATTCATTTACTGAAAGAGTAAGTGCCTTCTGCATGAGCAGTGCACACAT-GAACCCATCCAGAGGGTGGGTAGGTGGGCTAGGGAAGCAGCTGCTGCTCTCTGCCGCTGAGCCCCTCATTCCACTGTCTT-TCCTCCATGTAGCCCACTTCTGCCTCATAGCAGAGCAGCCTTTACCAGACTGACTGACTGT--CTTAGCTTTGATCCAAAGCCTGGGCAGAGAACTAACTGTCCAGCTGCAGCAAGAAAGGG-CATCCCCTCAAATGATGGGAGC-TTCTGAGAAGGCAGATGCTGCAGTGTCCATGGACTGTACGGGCCAGCATTGCCGTCTAGCCTGCCTGGCCCTCCTCC-TGCCTCCTGCTGTA-----------------CGA------GGGAGGGATTCACCAAGCCT-ACCTTTGTGTATCTTTGCTTACTTTCTCCTCTGCATTCATTGACTCTCCAAGTTTGTGTGCTGA-GCAGCCACACCCAGGGCTTCCCTGGCGGAAGG-CAAGTCTGGATCTCC-ATTgaccttgttctattg-agattgtgatgcagtaggtctgagagtctgtctctaagaaattcacccagtgggtctcatgctgctgatccaT
s HiC_scaffold_1 111449512 1531 - 233722169 TGGAGAAGGAATTATTAAGGGTT---CAGATAACTCATAGCTGTACAGAGAGAGAAGAGCAAGGAGCCCTGTAGAGTTAAGAACATAGAAGTCCTAAGGCATAGTAATTGCAGGAAAGGGAGATGC-TTTTGCTGTCTGCATTCCTGAAACTA----------------------------AGGGAGTATTCCCAG---------CTGGTCTCCAGTCTCTTGGTTGACTTgcttcc---------------cttccctgcc-------------tcctccatCCCTGAAATTGCTGTCAGCTGTCTGGTACTAAGCACAgtgtcttcctctcctcttctacTCCTCA--CTGTCCAGCTCTCCTCCCTGGCTACCCACTGCCTTCTGCTCCCACCACTGTACAGAAACTGGCACCTGCAGGTTCCTGGTGACTACCTGTGGCTTCATCTCCACACCTGTGGCTTCTCGGACTTCAAGAACAGACTTCCTTGGAGGGCTGGAGAACCTGTGGGCAGCTGGG--------CTTCTCCCCTGGAGCTTTTTCCTCAGTA-GATCCCAA------AGGAACCTGTGCTACAGAGCCATGGATATCACCCTGAGAGCCACAGATGGACCAGATCAAGCATAAACTCAGGGTCCCTCCAGTCT-GGCTAAGCTTGGCTTTTTAACTTCATCTAGCAGATCTGACAGCTTGCTCTTTCCTGAGTGTAGTGCACAGAAAGGTCAGCTTGGCTCTTCCGTGTGATTCCTTCTCACTTTTGCTTCTC--------TACCTC--CTCATTTGTGTCTTAGTACCTAGCTCAGAGGTCATGGCTTTTTGGAATGTCCTCTCCCTTCTATCATAGTAAAAAAATTGATTGTACTTCTTTTAGAAGGATTAATTT--------ATTTGGCGACTCATTTATTAACTTGTTTAACTATTATTGG-GCAGAATCCTTGCCCTTGAGAGCCCTAGAATTTTT---GCAGGAagacctttaaaaatta--ttttagtagaTGGCAACAAGTACTGGAGTTTAGTAGAATCCTTTATTGATGGAATAAATGTGTTTTGCATGAGAAGAGCACACACAGAGTGGGACCGGGAGGGTGGTAGGTTGGCTGCTAAAGCATCTGCTCGTCTTGGTTGCTGGGTTCCTGCATC--CTGTCTTCCCCTTCATATCACCGTGTCCTGGCTTCTAACGCAA-AGCATGTCCTGTACTG-CCAACCACAGCTAAGCAGTAATTGAAAGCCTGGGAAGGA----AACTGCCCTGCTGCAGAAAGAAAGGGCCGTTTTTACAAATCATGGGAGTGGCCCGGGCAGGCAG-CACTG--GTATCCA------GTTAAG----GCATCGCCTGCCAGCTTCTCTGACCTTTCTTTGTGCCTCTTGCTggattcttttttcctcctgctGACTCACTGTCAGGGATTAACTAAGCTTCAATTCTGAACATCT----TTACTTTCACCTCTGCATTTATTGCCT----AAGTCCATGCATTGATGCAGCAAAGTCCAGGGTTTCTCAAGCTTTTGGACACATCTGAGTCCCCTGGGGGACTTGTTAAAGTGCAGATTCTGACTTAATGGACCTAACAGCCTACATTTCTCACATACTCACAGCTGATTCCCTGTTGCTGATCTAT

a score=89122
s chr3           101448248 5783 + 160039680 [encoded data, 6667 characters]
s HiC_scaffold_1 111451055 6137 - 233722169 [encoded data, 6667 characters]

a score=7371
s chr3           101450902 397 + 160039680 CAAGTCGAAGAGAACGCTCACCCTGGTGGAAAACCGGGCAATTCAGCTGAACTGCTCAGTCAAGTCCCAGACCAGCCCGAACTCGCACTTCGCCGTGCTGTGGTATGTTCACAAACCCTCGGACGCGGACGGCAAG------------CTCATCCTCAAAACCACGCACAGCTCGGCCTTCGAGTACGGGACCTACGCCGAGGAGGAGGGCCTGCGAGGCCGGCTGCAGTTCGAGAG-----------GCATGTGTCGGGGGGCCTGTTCAGCC------TCACTGTGCAGCGAGCCGAGGTCAGCGACAGCGGTAGCTACTACTGCCACGTGGAGGAGTGGCTGCTGAGTCCCAACTATGCCTGGTACAAGCTGGCCGAGGAGGTTTCAGGGCGCACAGAGGTCACTGTGAAGCAGCCAGGTAAG
s HiC_scaffold_1 111457650 393 - 233722169 CAAGCCCAAGGGAAC-CTGTCAGTTCTGGAGACCCAGCAGGTGCAGCTAGAGTGTGTGGTCCTGAACCGCACCAGTGCGGCCTCTCAGCTCACAGTGGAATGGTTCGTGTGGAAGCCCAACCACCCGGAGCGCGAGACAGTGGCCCACCTGAGCCGTGAGGCCAC------------CTTCCACTATGGAGAGCAGGCAGCCAAGAACCACCTGCAGGGCCGGCTGCACCTGGAGAGCCCCTCTCCCGGTGTGTACCGG-----CTTTTCATCCAGAATATGGCTGTGCAG---------------GACAGCGGCACCTACAGCTGCCGTGTGGAGGAGTGGCTGCCCAGCCCCAGTGGCGTGTGGTATAAACGGGCGGAGGACACTGCTGGACAGACCACAGTGACAGTCATGCGGCCAGGTGAG

a score=5011
s chr3           101451087 212 + 160039680 CCGAGGAGGAGGGCCTGCGAGG-CCGGCTGCAGTTCGAGAGGCATGTGTCGGGGGGCCTGTTCAGCC---TCACTGTGCAGCGAGCCGAGGTCAGCGACAGCGGTAGCTACTACTGCCACGTGGAGGAGTGGCTGCTGAGTCCCAACTATGCCTGGTACAAGCTGGCCGAGGAGGTTTCAGGGCGCACAGAGGTCACTGTGAAGCAGCCAGGTAAG
s HiC_scaffold_1 111461797 210 - 233722169 CCAGAGGGCAGTCCCTGGGAGGGCAGGCTCCGCTTCCAGAGACTCTCGCC------TCTGCTCTACCGGCTCACAGTGCTGCAGGCAAGCCCCCACGACACGGGCAACTACTCCTGTCACGTGGAGGAGTGGCTGCCAAGCCCTCAAAAGGAGTGGTACCGGCTAACAGAGGAGGAGTCAGCCCCCATTGGCATCCGTGTCCTGGACACAAGTAAG

a score=44433
s chr3           101454741 2241 + 160039680 tcatcctcagctttATCCCTGCTGGGAGAGAAGCTGGCACTCTGCCCTTGCCCACCCCTTCTCTTAATAGGGACCTCATCTATCAGACACATGCTGCAAAGGCTAT----------GTGGTTAGTCTTTCATTGCTTATGTCCCCCCACCCCCAACATCTGAACCCCCAAGGGTTCTGAACCAGAGACAGCTGTTAC-----------------CGAACACTAGGCTCC----CACATGGCCCGGGA---TTCAACACACGCAGGGAAACATCTGAAACATTGAGA--AACATCTGAGACGCTGG----CCTGTGCTCCAGGGGCACCTGTTCAGCCGCCCTCTCCAGGGTGC-TGCCCACTGCTTGCTGTCTTGCCACAGTGTCTTTTTTCCTCCCTGTTCAGACAGCCGCCTGAAGCTCAGCCAAGTCCAGGGGAGCCTGTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTGTGTGGTCCTGAACCGCACCAGCGTGGCCTCGCAGCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTGGCCCACCTGAGCCGAGATGCTACCTTCCACTATGGCGAACAGGCTGCCAAAAACAACCTGAAGGGGCGGCTGCACGCGGAGAGCCCGTCCTCCGGCGTGTACAGGCTCTTCATCCAGAATGTGGCGGTACAGGACAGCGGGACCTACAGCTGCCGAGTAGAGGAGTGGCTGCCCAGCCCCAGTGGTGTGTGGTATAAAAGGGCTGAGGACACGGCCGGACAGACAGCCGTCACAGTCATGCGACCCGGTAAGGCCCTAGCCTTCGGTGTTTCCATGCTAAGAGTATTTTGGATGCTtgtattgggcacttatctcactacagtgaccaaagacccgacacagcttaagggaggcagggttgatttgacagcctgaggcagcaggttgtgctgcatccagtaagaagcagaggaacatggatgctggcgcttactggctttctccttctctgccttttgttcagtctggggtcccagcccgtagggtggtgctgcccacatcccaggtaagtgggtcttctctggatccttctgtggaaatccctcacagacatgctcaaccgtctgcctccttggtgattccgagtgtagtcaataagggttaattatcacaGACCTGAATACAGTGAGTTTACTTAAGAAATTATTTGCAGTTCAGCATATG-----------AACATTTGCATTCTAAATTCTCTCA------CCATG-------TTTGCCCTATGAATGGAAAATTGTACATCTGGCTTTGACCTCAGGTGATTAGGCTTCTTAATTAGAATAAAAGCCAGCAATTAGTTATTCTAGGTCCCAAGAACATTTTCTTTTTAAAGCATACATTCTGGTCGGACGTGTGGCTGGTGTG----ACAGAAGTCTTGAAGCAGTAGCCGTGTGCT--GGGAAGTTGGGCCGCTGGGTTTTCAGTGGGAGAGAGTGGATTGTTTAAGTAGAAGGTGGCCC--TACCTCTGTCCCCCACTCT----GCTCCGGGTAATTCCATTGGCACTAATGACTTTTCCATGTGGCCTTTTGTTCCTCTTGTCTCTGTTGCTGTTCCTAAAGTGTGCAAAATGCAGATAATTACTGGGTGCAGTTATTGTTACA---TTTAACATATAATTAGGGCGAAGCTGAGCAGAGTCCCCGTGTCTCCTGCAGCATCACAGCGCCACTGATCCTTATCCAGCAGAAAGGACGTGGAGCGGAATTGAACTTGTGACCT--GTCAGTGTGAATGCTTTGCCCCGTGTCCTCTGGGTGTTCCGTCTCTCGGTCCTTATACTGTTGCAAGTTCTTCTCCTCGGGCCACCG--AGTCTGAGCTGCTCTTGTCCTTGATGACACGTTGTG--GTCACGGCTGTGCTGTGTCCCATTCATCC---ACCTCTGTCGTGGGAAAAGGGCAT-----------CAGTCACCTTCACCTGTACTTGCCCAGGCTGGAGGAGAACCCCTCCCCCCATTATCATTTTCTGTGTGTATACTTGGCTGTCTtgctgctgctgctgctgcatgctgctgTAAAGCTTGCCCAGAGGCTGCTCTTTGCCTTCCTGTGGAAGTGCA----GAGAATGGCA------------------CAACTCCCACTTGTTTGATAGATCACCAGG-GTAGCCCCCTAAAACCTGGAATGGGAGGACACAGACATTTATGGAGAATCAGCTAGGTCCCTACCACT-----TAGACTGATGTTTAGTCTTCCTAA--------------------------------AATGAATCCTAAAGAGAATTCCTTCACAGCTGA---TAAGGAAACCGGGTGGACACAAGCGTCTGC
s HiC_scaffold_1 111457240 1962 - 233722169 TCAGTTTCCAGTTTACTCTTGCCGAGAGAGAGCTTCTCACCCTGCCCTTGCCTGCT-----TCTCACCAGTCGCCCCATCACCCAGTTCTGTGCTTCCTGATCTGTCCTCACTGGGAAGCGCAGCCTTCTGTAGCTGGTGTTCGTCCTCCCTCAAT-------CCCCGGAGAGTGATGGACTGGAGACGGCTACTGCAATCATACTGGACTCTCTGAAACCTAGGCACTTGCACACATGACCCAGGAGTGTTGTGTGTTTGGGGGGCCACATCTGAG-CAGTGTGCCTGTTAACTGAGTCTTTATTTCCCCTATACTTAGAAGGTACCCATTCACCTCCCCTCAGAAAGGTGTATGCAGACCTCC-GTGGTCACATCATGATGTCTCTTTCCTTGCTTTTCCAGACAGCCGCCTGAAGCTCAGCCAAGCCCAAGGGAACCTGTCAGTTCTGGAGACCCAGCAGGTGCAGCTAGAGTGTGTGGTCCTGAACCGCACCAGTGCGGCCTCTCAGCTCACAGTGGAATGGTTCGTGTGGAAGCCCAACCACCCGGAGCGCGAGACAGTGGCCCACCTGAGCCGTGAGGCCACCTTCCACTATGGAGAGCAGGCAGCCAAGAACCACCTGCAGGGCCGGCTGCACCTGGAGAGCCCCTCTCCCGGTGTGTACCGGCTTTTCATCCAGAATATGGCTGTGCAGGACAGCGGCACCTACAGCTGCCGTGTGGAGGAGTGGCTGCCCAGCCCCAGTGGCGTGTGGTATAAACGGGCGGAGGACACTGCTGGACAGACCACAGTGACAGTCATGCGGCCAGGTGAGGCTCAAATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTCCTCTCCTTTTGGT------------------------------------------------------GTTTTC----------------------------------------------------------ACTTTAAGTATAA---------------TATTTCATGTGTGAATAAAATTAGTTTACCT---------TTTGCAGTTGAATATTTGTGTtaacattttgcatttatattcagaATGATCTCAGGTTTTTCGTGGGGTTTTTTTGGCCTGAGAATGAAAGGTTGCCCATCTGGCCTTGGCCTAAAGTGATTTGATCTCTTAATTAGAAT----------AATTAATTATTCTAGAGgac-agaatgttttctttttgaag-----actAGGTTCAGACTAACAattgatatgaaaaataaaagtcttaCAGCAATAGCTATGTGGTTCAAAAAGTCAAGCTGGTGAATTTTCAGAGgaaaagagttgattctttaaatagaaagtaattaagtATCTATAGCCTCTACTCTCTCACTTCCTAATAATTTTATTGGTACTAATGAGCATTCTGTGTGGCCTTTTGCTTTCCTTGTCTCTGGTGCTGCTTCTAAGGTAC-CTAAATGGGTATAATTACT-GGTAAAATTGTTGTCACACATTTAAACACAT-----GAGCTAAGATATGCAGATTC-----------------------AAGCTGATAGTCCCCAT--------AAAGGCATGGAGCG----TGCATTTGTGACCTCCACCAGTGTGAACACTGTGTCTTGTTTT------GAGCTTCACACTGTGGT--TGGCGCTGGTGGAAGTT-TTCAGTATGTGTCACCTCCAGGTTGAGCTACTCTTTTTATTGGTAGCACAGTGGACCATCAAGATTGAACTAGGCCTCGTACGTCACAGACCGTGTTTCCAGAAACTGAATACACACTTTGTTACAGGAGTGTTCTCTTGCATGTGTCTC-ACTAGAAGGGAA--------------ATCACCTTCACTTTGAATTCCTAG-TATTTTTCTATGG-----GCTTTATTTATGAGTAGAGTTT------------CTGTTTGTCTCCTTCTGAAAGTAAAACTGGAGAATGACAGCTGAGTGCTCTTCTTTCTGATTCCCACCCATTTTGCAGATCCTCAGGCGCAGGCCCCT------TGG--TGGGAGGAGACAGGTGGCTGTGGAGTACCAGCTACATCCCTGTGACTGTTAAGAAATTAACGTTTAGTCCTCCTGACAATCCTGACTGTGAATTGTACTGACAAGGGTAATAAAGCGTAAAAGGAAGTTC-TCACAGCCAAGAGCAGGGAAA----GTGGTCACCGGAGTGTGC

a score=6593
s chr3           101455124 412 + 160039680 CAAGTCCAGGGGAGC-CTGTCTGTTCTGGAGACCCGGCAGATACAGCTGGAGTGTGTGGTCCTGAACCGCACCAGCGTGGCCTCGCAGCTCCTGGTGGAGTGGTTTGTATGGAAGCCCAACCACCCAGAGCGAGAAGTGGTGGCCCACCTGAGCCGAGATGCTACCTTCCACTATGGCGAACAGGCTGCCAAAAACAACCTGAAGGGGCGGCTGCACGCGGAGAGCC---CGTCCTCCGGCGTGTACAGGCTCTTCATCCAGAATGTGGCGGTACAGGACAGCGGGACCTACAGCTGCCGAGTAGAGGAGTGGCTGCCCAGCCCCAGTGGTGTGTGGTATAAAAGGGCTGAGGACACGGCCGGACAGACAGCCGTCACAGTCATGCGACCCGGTAAGGCCCTAGCCTTCGGTGTTT
s HiC_scaffold_1 111454188 416 - 233722169 CAAGTCAAAGAGAACACTCACCCTGGTGGAAAACAGGCCCATTCAGCTGAACTGCTCCGTCAAGTCTCAGACCAGCCAGAACTCGCACTTTGCCGTGCTCTGGTACGTGCACAAGCCTTCTGACGCTGATGGCAAACTCATCCTCAAAACCACACACAGCTCCACCTTCGAGTACGGCACCTACGCTGAGGAGGAGGGCCTGCGACCCCGGCTGCAGTTTGAGCGGCATGTGGCTGGCGGCCTATTTAGCCTCACGGTCCAGAGAGCCGAGGTCAGTGACAGTGGCAGCTACTACTGCCATGTGGAGGAATGGCTGCTCAGCCCCAACTATGCCTGGTATAAGTTGGCAGAGGAGGTCTCGGGCCGCACAGAAGTCACCGTGAAACAGCCAGGTAAGAACAGAGAGTTCAGCCTTT

a score=192879
s chr3           101457590 7613 + 160039680 [encoded data, 8351 characters]
s HiC_scaffold_1 111461487 7759 - 233722169 [encoded data, 8351 characters]

a score=4843
s chr3           101457922 148 + 160039680 AGGGCAGGCTGCGCTTCCAGAGGCTCTCACCTCTGCTGTACCGGCTCACTGTGCTCGAGGCGAGCCCCCAGGACACAGGCAACTACTCCTGCCATGTGGAGGAGTGGCTACCAAGCCCTCAGAAGGAATGGTACCGACTGACAGAGGA
s HiC_scaffold_1 111457852 148 - 233722169 AGGGCCGGCTGCACCTGGAGAGCCCCTCTCCCGGTGTGTACCGGCTTTTCATCCAGAATATGGCTGTGCAGGACAGCGGCACCTACAGCTGCCGTGTGGAGGAGTGGCTGCCCAGCCCCAGTGGCGTGTGGTATAAACGGGCGGAGGA

a score=4050
s chr3           101457993 91 + 160039680 GACACAGGCAACTACTCCTGCCATGTGGAGGAGTGGCTACCAAGCCCTCAGAAGGAATGGTACCGACTGACAGAGGAGGAGTCTGCCCCCA
s HiC_scaffold_1 111454465 91 - 233722169 GACAGTGGCAGCTACTACTGCCATGTGGAGGAATGGCTGCTCAGCCCCAACTATGCCTGGTATAAGTTGGCAGAGGAGGTCTCGGGCCGCA

a score=14284
s chr3           101473449 537 + 160039680 CATAGTGTTCTCCAATATGGCTGTGGATTCTCCAAAACATGCCCGAGTTTCCTCTGAGCTGGCTGATCTGTAGGTCTGTGCACATTTTCCTGTGTAACAATTAAAATTGAGAAGCAAGCAAG-ATGTTCAGCAGATAAAATCAGAGAATAATAAAGCATTCAGATTAATAAGGAGGTAGCGATGCTGTGCC-TCCTGGATGTGTTGCAGTAGAGTTTCCCAACTAGGCACTGGGTATCTAGAAAATAGCAGGGATTTTATAGGATT-TTAATAGAATGATCAATAATGTATTGAAAAATCATGTACTTGACTTTGGAGAATAGAGTTTAAAAGCCTTGT-GGAGTTTTAAATAGCTCTGTAAGAGTCATT--TCCCCCAAACGTACTTTAGCTCTCTGCTCCCTCCCACCCAACACAACACAGGAAGAGTCCGAAGTG-----ACCCTCAAGCATGATGGGATTGAACATCTTGAAAG--GCCAGGCAATCAAATACAGATGTAATATGGAGCAGGTAAAATTAATTTTAATGATGCCTTTATTTAACCT
s HiC_scaffold_1 111477690 533 - 233722169 CGTAATGTTCTCCAAAATATCCATTGAGATT--AGACCCTGC---ATTTCTACTTGGGCTCTCTGGTCTTTAGTGTCTTGAACATTTCCCCATGTAACAGTTAAGaacttgaagaaaaaaaggaagtagaTTATGTacattcagaaaataataaagaatttagaCTAATAAGAAACTAATGAGGCTGTACCATCATAAATTGGGTGCAATAGCGTTTCCCAGACAGGAACGGAATATCTACAAAATAGCAGAGATTTGAAAGAATTGTTAATGAAAAGATCAATAGAGTGTTGAAATGTC-TGAAATCAGActtagaaaatagattttaaaagactCACAAGAATTTTAAATAGCTGTAGTAAGGACTTTACTCCCCAAGGCATGCTGTAGATGGCTG-TGTATCCTA--------AGGACAGAAAGAGTCAAAGGTAAATGTATCTTTGAGTGTAATGAGGGAG-GTATTTTGACAGGAGTAACGCTGCCAAATGGAAATATAATATGGGACAAAT-AAGTTAATGTTAATAATGTAGTTTTTTAACTT

a score=6687
s chr3           101493666 1633 + 160039680 CACCCCAAACTGACAACAC---AAAATAC---TTCCGGAAACAGAGCTTAGCTGGAGGCAACTGAGACA--GCTTCCCATATGTCAAGTTGTTGTGGAAGGTCAAATCTGTCTGCAGACTGAAC-TCCAGAGCCTATGAAAGGCCACGGAGTCAGAACTGAAGGGAAAA----CCTGCAAACAGGCAATGCCCAATGGTAGTGTAGTTAGGCTTTGCA--TAACAGCCTC-TTCAGGG--AGCTCTGAAGAGAGCAACACCTTTTAAGTCTACTGTACTAGATGAGTTCCTTAAAGTCAAAAG--ACCTAGAAAAACAGTGTCCCTGT-------------------TGTCTACAGAGCCCATGGCAAGGGAGGCAATACCAGAAATGGACACTAGAGGGCTCTCTCACACAAGTGATGTGACAGCCGTTCAGGTTCTTGAGCAGCT-----CCTTGGCAAGCTGAGAA----AGGTCTGTCCAAGCCTGGGTGGGAAGACTGCCGCGGCTTGAG--------CAGTCATGTGATTAACTGTTAGAGATTTACAGAAGCCACACATGGCTTGTGGTGGGCAGACTTCTGTGAGCTAGCCGCCTTTCCTATGCACAGAAAGCTCCTGGTGACATTGTCTGCTCTTTGAGATTACTCCTGAGTATC-TACAT---CATGTACAGTTGCTTCCCGGC-CCCTGT-CTTCTCACAGTC---AACACCGCCAGCTGCTGCCAC-TCTGCGGCTGGGCAGATGAGAAGCACATTCAGGCTCCAG-CAACAGCTGCAGTTGTTCAGTTGTTCAGCCCTctt----cggagcgctgg-------------tggctgggtttggtttccggttttgcctcttgctgtctgtgtcaccttgggcgagccatctcctttct-------------------gggcctc-----------------------------agtttcttcatctgtagaacagttggtactaatct--caaaatgacttccagTAAAAATGGAGTTGATTGGtgtcttagtcagggttactattgctatgatgaaactccataaccaaaagcaagctggggaggaaagggtttatttggctt-----acacctccacatcaccattcatcactgaagaattcagtatagcacctcagacagg-gcaggagcctgg------------aggccgg------------agctgatacagag-gcagtgctgctcactggcttg--ctccccatg------gcttgctcagcctgcttt-----cttgtggaacccaggaccaccaggccaggaatgacaccacc----cacaatgggctgagccttc-tcccattgatcaatagctaagacaacgccct---------acatgcttggctacagcccaatcttataa---agacgttgtctcaat-----tgcggctcc--atgccctctgataactagttcgtgtca-----------agttggcataaaacta---------------cccagcacGAATGGGAAAC------------ACCTCTAAACA--GTAATAC-TTTGAGTTAGTCACATTATTACTCGG-AGcagggcttggcaaacattttctataaagggccagagagtgaa---------------tGACCTgaca-------------------atatagaaacagactagtgtggctgtgtttcaataaaactttattttagtacaatggacaacttcatGGGCAGTGAGTTGTGAGATGTGTTTGGCTTAGGGGTTTTGTTTCACCAACTCTCACT----GCCTGCTTTAGAAAGGTCTGTGAGCCTTCGGTGGATTCTTTG--TCTAAAAGGCAATAAGAAAAA--CAA--------CAGCTGTGCCTGGTGTGTGTGG
s HiC_scaffold_1 111511203 1803 - 233722169 CAACTCAAACCGACTACACTGTGGAACACAAGTGCCTGGAGCAAAGCTGAACTGAAGGCAACCAAAATAAAGACTGACAAAGGCCAAGCTGTCGCG--AGGTAGGATGTGCCC-CAGGCAGCGCAGTAAAAGTACTCGAAGGTCCAAAAAG------CTGAGTGCAAAAGAGCCATCCACGTGGGTCCTGTGGCAAGGCAGCACTGTTAGAACGCGCAGGCAGCGGTGTCACTCAGGGCGAGTTTTGATACGGAGGACACTCCTGTAG----CTTTATTAGGGCAGTTATGCAAAGACAACAGTAGTTTTAAAAGTCCCAGGCTCTGTGCTCCGCGGAGCTTGAGGGTGTTTACAGAGCTGCTCTTGGGGGTGGCAATACCACTAACATCCACTGGGGGTCTCTCTCACACAAATCATGGCACGGCCTCCTGCGCTGCAGAGTAAACGGCAGTCCTGGGACTCTGCTAGACCCAGGCCGGTCCAGAACTCATGGGGAAGCCTGCTGCAGCAGGTGGCTCTTCACAGAGACGTGACCCTCTGTTAAATGTTCATAAGAGCCA-----GCCTTGTG-----------CCAACCAGCCAGTTTTTTCTCTGGTGTAGCAAAAGC-CCTGGTGATGTTCCCTGTGCCCCAGGATT--TCTGGAGAATCTTGCATCTCCCTGCAGTATTAATCCAGTGCGCTCTGTGCTTCCCTCAGACCTGCACCCAGGCCCCTGCTGCCGCATCTCCTGCTGGA-----GTCAAACAAATACA--TTCCAGACATCAGGGGCTGCCTCTCAGGAGCAGGGTCTTCTGGTCACAGAGTCCTGGGTTACAGGTCAGAGATCTAGGTTTGGGCTCTGACTCTGCTATTCTCTAGCGATGcaacttt--------ccccttctttcttctactgggaattgaatgaGGGCCTTTGTACTAGGCTATACCcactatctttttaaatttttttgtttagagAAAGATTCAAACTAAGTTGCTAAGGTGCCT-------GGGCTGGACTCGA------ACTTAG--------AATCTTCCTAC-------Ctcactctcccagagt--gctggga----------ttacgtaTGTTCCAGCACACCT-TACA-CATGTTTCCTCACATGTAAAATAAGGCTAATACTt--gtcgggcgcaggcgctcaacacaccccgcccaGGACGATAAGACCATGTCAGCTTCCACAATGCGTTACGTCCCTCTCTAAACTAGCCaccccgtgcgcacctcgtgctcactcggTATTTGCCCCGTGcggactctgtggcaac----ccctgattggccacagctgggtatagtagccagagcctgcgtcccatt---------ccagccctgcttcctcgtggcagcctgtgattggtcacggccgaata-tataaaccagagcccgcgtcaataaagcagcagttcctgttaccacctgaagcgtcccctgtctcattggggggctgcgccggtcaaatACTAACCTCAGAAATGGTTTCCAGTATTAAATGGAAATGAGTGCGTGTGAAACGCTAAACACTGGAATACATGTGAGTTGTTTGCATTATTACTTTGCAGCAGGGCTTGACAAATGTTTTCTATAAAGAGCCAGATGGGGaatacttttggctttattggccttacagactctgtctcaattCTTTGTACATAAGCAGATTAGTGTATCTATGTTTCCATCAAATGTTACTTTACAAAAACAGGC-----CATGGGC--TGAAT-----------TTGAGCTAAGGGGCTGTGCTCCGTTGACTCTAACTAACCGTCTGCTTT-GTAAGGCCTTTGAGCTAGGAGtggtttttatatttctaaagagttgtaagaaaaaggcaaagaatggGTGACAGTGACCAGTCTGTGTGG

a score=32928
s chr3           101496400 2078 + 160039680 TGCCTAGGAATACAGTTCAAAACCGAATGAGCTGGAGTGTCTCTAAGGACTCACTCAGCCTCAGGTACCCTGGGTTTTGTAATCGTGGTTGGATTGCTTTGGGCTGGT---TCAGTTGGAGGAGCAAGCATGGTCTCCATTAGCCAGGTCTCTGAAAC--------------CTGGAC---TGGTTTCAGGG----------------TCTGAGGAGAGAATCGATTTTGAAAATTAACTCTGCTCCCACAAACTGCATGTGGC--GCCCCATGTGGGGCTTACATTATGAAGCGAGA------------CCAGGGAAGCTCACTTGCTGC-ATGAGAACTAGGAAGTCACGTA-AGTGGTCATGCCCAGTATCTGAGGCTTCCCTGACCCTCCTGGCCTTGCATTTCTTCCCTGTGGC-CCTGAGCAagtggtttccaaaccaggctggccatggtgtcatccagagagcttcagggtatgcaaacttccacgctgctcccggctagattctgactcagttggcct-----aggAATCTACAT--GTGTAAAAAAATCTCACAGGGAAAATGAAAG-AGCTGCTAGGTTTGGGGTCTATGGGA---ATTCTTTATCTTTCTCTGTCTCCCTGGCTGCCCAAGCTGCTTCCCTGTGT--------------TGTGTTAACTCTC-----------AAGTCTCTTCTGGGCTGAGCTATTGACGTGAGAAACTATTAGTTGTCTTGATCTATATCCCAAGAACATATCCACCATGAAGATGCAGGACATCACAAATCACACTGAGGAGGAAGCCTTCCAGGAGGAT-GAGATATGAGTAGGATCCCGTG------------------TCTAAAACCCAAGGAAACCAGACATTTCCTAGCAGGAGAGAAAGGGCAG----------------GGAGGGAACATGAATTGTAT--------ATGAATAAGTGATTTTTTTCCCCCTTAGTTACCAGAAAGAGAAACGTATCAACAAGAGCAGACCCGGAGCCATCAACTAAAATAATTTCT--GAGTCAGA--CTTCTATCCCGGAAGCTGTGAACTTTATCCTC--ACCGCGACTAATCTAATATTAAGCCCCTTAACCTTCCTAATTGTTCGCTTTGGGTATCAGCTGGCTTCGTATTAACCTTTCAGTGTTTCCTGTAATGCAGTTACCTCCGCGTCCATCCGGCTGGACCTGATTTAGAAGCTGCGGCAGATCTAGAAC-CTGCCTCTTGCT---GCTCCCCCTTCCTTCTCACAGTATTGTTTTCCGCAGCACACTGTGAAGAGACCGCTTGGCTATAGT----AGCACC--------------------TCAGGA--GCGTACCACA------TCCTCTGGGGTCCC---------CAGCTGTCCTACTTGGCTTAGAGGCTTTCAGTGGGAGACAGGTGCGGCCTGTCAAAGCTGAT--------GGCTGA-----------------TGAGC---------------------------------------CTCGGGTAAG--GAAACATTTGGCC-------------------TCTGCCTGTCTTGGGCTCTTATTGGGCATGGAAAGGCTCTTC--CTTTATTTCAAACACCAGCCTGTGGCT--GTCTCTAAGCTGGT----------GACCCATCTTGTGGTGAGCTACATATCCTGAACTGAA--------------CACGGGACTTGGCAGTTTTGCAGAGGAAGCCTATGGCTTCTTATGAAATTGCTAAC-----CAGGCA----------------------------TAAGACCTG--------GAAGATCTTTTGCTCCCTGTGGCAGGCTATGGCATGCTTCCTTTCTCTTGTACACTCAGGGTAGAAAGCTAATAAGAACTTAAGAGTCATCACTGT---AACATCTGCCTCATGACT--GGAGCTATAGAGTCCAGT------TAGGAGAGAGGAAGCATGCGAG-GGCTTCCTCGGCTGCCCCTGCTCTTCCTGAGCAG-GCAGGGGACCCACTTTCCATCCAGGCTCTGGGTAACAGGGCAGAGGAAACAGGTGGGAGAAACTTTATTCTGACCTGTCCTAAACAGAG-----TCCTCCCAGCCACCACAGGCCACAGTAGACCC---------GTGTGCTTCACGGTTGCTAGCCCA----------------------GGCTTGAGCTTT------GTGAGGCCTTTGCATGGCGAGGGTACCTTCAGGTTTCAGAAAGACTTCCAACCGCCTCCCTCACTGAAAGAACACTTTGGGTGGGGAAAAAGCTACCTGTTATATGCCGCTGTCTTAACCAGGACTC------ATGGACACACTAAGCCCACACCTTATCCCCATGCCCTGTCCTATGCTCTGTCCCCACAGGTCTCGGGCTTGCTGGGTTGAGTGATCATCTTC
s HiC_scaffold_1 111514412 2346 - 233722169 TGTCAAGGAGCACAgtttggaaactgaggcactagGG-GCTTCTAAGGGCTCTTCCAGCTCCAGGC-TTCTGTGTCTTATGGTCCTG-TTAACTTG---TAGGCCTGTGCCTCTTTCTGTGGGACAAGCTGGGCCTCCACCAGCCTGGCCTCTGAAAATGCCAATTTGAAAACTGGACACATGTATGAaggagagagatttttttttttttaaggagaga---gATTTTGAGAACTAATTTAGCTCCCACATATTACATGTGTCTAGCACTGTGTGGGAATTATAATAAGGAATGAGATAAAAATTCTGCCCCAAGAGGATCACTGGCTGGGatgggagccaggaagccatgcgCAGCCAGAATGCATGGT--TTGAGGGTCCCCGGCCCGCCCTTGTCTTCCATTTCTTACCTGTGCCTCCCGAGCCCGTGGTTCCCAAGCTGTTCC--------TGTCATCTGAGGGGCTTTAGAATGAGTAGACTCCCACGCTACTCTTC-CAAGGTTCTAACGCAGCTGGGCCTGGGCAGGGCCCAGAATTGGTGTGTTATAACCTTGCAGGGAGAAGGGGAGCAGTCGCTGAGTTTGGAGCC-ATGGGAGGAATTCCTGGTCTTTCCCTGTCTCCTTAGCCACGTAAGCC---TACCCGTGTGGATTCCTCACATGTGTGTTAACTCCCGTTGTCTCAGAAACTCTC------ACTGAGCTTGTGA------AACCAATTGGGGGTCTGAAC---TATCCCTAAAATATGAGCAACGTTGA-----------CTAAAATGTTCACTGAGGGAGAACTGTTCTGGATGGAAAGCCATCTGGGAAAGGCCTCCTGACAAGTGGGTCTTTAAACTCTGGGTCCTGAGGAAA---AGCATTTTCCTACAGGACAGGAAGGAGGGAAACAGAAgacatggagaaaagaaaacGCATTTtatgtgagtgaatgaatgaataatttttttctc----agtcacCAAGAACAAAATAGTGTCAACAA-ATCAGACCCAGAGCCATCAACTAAAACGATTTCTCTGAGTTAGAGACTTCTTTCCTGGAAGCTGTGAACTTTATCCCCCAGCAGCCATTAATCTAATATTGAGCCCCTTAACCTCCCTAATTGTTCCCTTTCAGTATCAGCTGGTTTCATATTAACCTTTCAATCTTTCCCCTAAAGCAGTTACCTCCACCTCCACCC----AGACCTGATTTAGAAGCTGCAGCCAGCCCAGAACTTTTCTTCTTGTTAAAGCCCCCACCTCTTCCCCCAAATCCTGTCTTCCTCTGAGTGCCGTGGAGGAGGCGCCTGGACACGGTTTGCAGCACCAGGACATGGGCCGGATGGAGCCAGGGACACGTTCTGCAGCCGGCGCCTTTGGGCTCTCACAGGGACGCTGCTGT--TACTGGGGACCAATGCTGTCGGT-GGAAACAGCAATGGCCT-TCAGGGCTCCTGGGCCTCAGGCTGGTAATGTATTCCACTATTtgagcttttttccttttctcacagCAAGAGCTCATGAAATAGTGTTTGGACAAGGCGAAGCATCTCACCAGATGACCAGACCATTGTACTTGCCTATCTTGAGTTCCCACTGTGCCTGT-GAGGCCCATCAGCTCTAT-------AATAGCCTGTATTTCAGTCTCCAAAACAGCCAAATTGCAAGTACCATCTCATAGTCCACCCTACAGCCTGAATTCAAATTCTGCTCTTTCCTACAGAGAGCGACAGTTTTGGAGAGAGCATCTTTGGCTCGTTG-GCAACTGCTAACATGGATAGccagtatatatgtatatatgaaattatatgcTAAAAAATGTAAGCAGTGAGGGTGTTTTGTTCCGTGGGACA--------CACACTTGCTGACAC--ACACAGCCAAGTCAGAAAGTTAGAAAGAACC--ATATACTTCACTATCCAAACCTTGGTTTTAGGAATACAGGGCCTTGGGATTGAGTGAGAGCCAGAAGGGTGAAGGCGTGTGAATGGGCTCCTCCGCCG-CACTGGTCTCTGTTGGCAGAATAGGAAACCCA--GGGCGGCAGGACTCC-GGCAGCACAGTGGAGGGAAGGGGAGTG-GTAGCTCCTTCCTGGCCTGGCACAGGCAGAGGCCTTCCCTCCCAGCCGAT-TGGATCAAAGCTGGCTCTTGCAAGGTGTTTGCTTGTGGGCTGC-AGCCCACCTGGTCTATCATTGCTGGTTTGGCCTGTGCTTTTGTCTAGTGAGGACAGTCCAC--CCAGCATCACCTAAGGCTTCAGAAG-------AATCCCCTCCCT-------AGAATGCCCGAgagttgggaaaagaaagctgT-------CTCTATCT---CCAGGAGTCTCCCATCTTGGCA---TGTGCCCGAAGCCTGTCCCCATGCCAGGACCACTTCTCTGGCT-------TGTCACACATGCCAGAAGCAGTGCTCATTTTC

a score=38642
s chr3           101499486 1843 + 160039680 CCCTAAAACTGGCAAGGGGCAAGGGACA--GTTCTGG-GCAGGGCAGTATCAACATCCCTTACTACCCAGGAAGGACTGGGGAGAGGACTGTGGTCTATGGCTAAAGGTGAG--------------ATAGCCAGCCGTCCCTGTGCCTTCTGGGTCTTG----TTAACAAAATCGTGTGGCCGTCTTATGGTCTC--------TCGAGTAATCTCTCAGAATACATTTGCCAACCACTGGTATTTTGGTAATTTGGTATTTTCCATTATGGGAAGAATTCTACGGCTCAAAAAAAAAAGCATTTTCCATTCCTTT-GGGTGTTTCAGCGTATGGCTAGTAGTTGCATTTGTTCATGAACGTTTATAGGG-----ATTGTGTACTATCTAAG-------------------------------------------GCTGT------------------------------------------------------------------------------------AAGTCAGAAGTGTAAGCAGAGAGAGTTATAGAGGTG------------------------------------------------------------------------------------GAGGTGGGGAAACAGGAAT------------TCTCTTGAGACTGGCTGGTCA---AGTCTTCGTTTAAGAAAAGTGGGCTTCAAGCAGAGCCTGAAGGGCAGATAAACA-AAAGAGGGCAAAGAGAAGATGTGTGTGGGAGAGACAGATTCAAAAGGGCAAGCATTCAGCAATGGCTAGGGCC----AGCACT---CTAGGAGGAAGCC-AGTCACCAGCAGGAAAGGGCAGAGCTTTCCTGACACTGGGCGTGTGTTTGCCTGTCAACATGGACGCAGGATGGCATCTT----CAGTGGCCAG---ACGTTCAGTGGCC--AGACGAGCGCTTTCACTTCTGGGTATTTATATTTCCCCAGCTACAAAATAAGATGTGGTGATAAATGCTTATCTCAAGGGCTGTG-GGGAGGATAGACTCACAAGTGACATCAGGCAAAACACCTCCAAAGGTAACGGTC-CCTCCTACCTGTCTTAGTGCGTTGGAAATGTCACACTTGAGACCTAAGGGGATAAGGATCC------------ATGTGCCCTTTACAAGTAAATACACAGACTGGTCAATGGACGGGGAATCTGTTCTCTCCCAGACTGTGGGA-GAGTTGACGGTGCATACT-GTCTCCGGATGTTTGATTTCCTGAGCCTCTCCTGAACAATGCCACCACTGTCCTGGCACCCTTGGCAAGCGGTCCCATGACAGCCAGGTTCTTGTCACATGTCATTTTCCTGGAGTGAGTCACTGGAGAACCGAGCTGTAGTCATGACCTTCAGCAG---AGGGAGGTGAAAGTGGCCCGGAATGAACACA---GAGTCGGACTTG--GCTTCCTATTCCCTTCCATGGACATTTCGCCCCAGGCCTTGACCTTGCAACTCAAGAGAGTAGGACCCTACTATGAGTGGTATAAACT-AATATCCTGCCTCTGACCTCCACACAAAGGGCCTTTGAACC-CCTAAGATCTTATCTCTTCCCTTCCAATCTAGCCC-TTGCAAGTCTGAGGGAGACT-GGAGCTGTTAGAG----TCTTTGGTCCCAAAGGGTAACCAGGAACACTCTTGGGTTCCCTCCCGAG----------AGCAAGCAGG--------AGTGACCAGACGGG------GCAAAAGCTCAACTCTGTGGTCTGACTGCATGTCTTCCTTCTTCTAGTGTGGAAACATGCCATTTATTACCACAGACACAAAGCAGAGCTCTGCAGCATGTACGTCTGTGTGTGACTGTTATGATCTAGCTCCCAGGACGAGATGTGATCTCTGTGGGGGTGATGCCTT---CCTggatagctg-tgtagcaggg-ggagaagaggtcagctggtaaccaggactcgtgagtccatgctcctctatctgtgaccttgggatatgaccttgtccaatcttccttctccgagactgagggtccacatctgaaaa-gtgaTTTGTCTCCATCACTGAATTGGAATATTTCCACCATTCC----GAGCTCTAATTTTCTTGGCTGCTCAAACACAAAGCCTTAGAGAGAAAT
s HiC_scaffold_1 111523556 2109 - 233722169 CCTTGGAGCTGCTGGGGGGCCTGGGACATGGTTTTGGCACAGAGCAATGTCTGTGTCCTC----ACCTGGAAAGACCTGGGGTGAGGATCCTACACTGTGGCCATAGGTGAGTCTTGACCAAGGACACAACCACCTGTCGCTG--CCCTCTGGGCTTTGCTACTTAACAGAATCCCA-GACACTCCCAGGGACTAAGAATTAACTTATTAATCATTCAACACCTGTTTACCAGGAAC------------AACTTGGTATTTTCCATTATGCTATGAAATGTCAGGTTCAACAGAG---GCACTGTCCATTCCCTCCAGGTGGTT-AGAGCAGGG-TGGGAGTTACACACACACTTGGTAGTTTATAGGAGATAAATTATATTCTATTTAAGAACTAAGTCACAGGTGGTATGGTGGCAAATGATTGTAATCCCAGCTGTTCAGGTGGCTCAGGGGTGGATTGttagttcaaagccaatctgtgCAACAcggtaaggccctgtctcaaaaaaattaaaaggcccaAATCAGAGGTGTAAGCAGAAAGAATCACAGCagtgacagggagagagacagagacacagagacacagagaggggcaagggcaaagagagaaaagggacagagagagatagagacaaagagagaaaaggagacagagatggagagaatcAACCCCTCAGGACTGGCTGATCAGAAAGTCTTCAT--GGGAAAAGTAGAATTTGTGTGGAAC-TGAAAAATAGATGGAGGGAAAGATGTCAAAAGAAAGATGTGTTTGGATGAGAAACACTTGCACAAGCACACATTCAGCAACT-CTACCACCGCATAACACTGGCCTCAGAGAAAGCCTGGGCCCTGGCAGCAAAGGG---ACCTGCTCTGTCACCAGGAGACACTT--CATGTCAGCCTAGACCCAGCTTTGACTCTTGCCTCTGCTGCTTGGTAACGCT--ACGGCCTGAGCTGGGCTCCTCCGTTTCTGGATGCTCACATGGCCTTGTCTGTAAAATGA-ACATGGGGATAA-TGTTTATCTCAAGAACTATGTGGAAAGGTAGAA--------AACATCAAGAA-----CCTCCAGGAAGAGTAGTCGCCTCTCACCT-TCCTGGCCCATCAGTAATGCCACAATTGACACCCGAGGGAAGAAACGTTCCAGAAGTCCTCTGAGTGCCCTTTAGAAGTAAATATACAGACTGACCAGTGGGGGGAAAATATGTTCTCTTTCAGCCTGTGGGGTGAGTTGACCATGCACTCTTGTCTCCGGATGTTTGACTTCCTGAATCTTCTCTGAACAATGCCATCTCTGTCCTGGCACCCCTGGCAAGCAGTCCCATGAGAGCCAGGTTCTTGTCACATGTCCTTTTCCTGGAGTGAGTCACTGGAGAAAGGAGCCGTAGTCATAACCTTCACCGGGGAAGGGAGGTGAAAGTGGAGAGGAATAAACACAACTGCGTACAACTGGGTGCTTAATGTTCCCTTCCACCAGTATTTTGCCCCTGGCCTTAACCTTGCAACTCAAAAGTACAGTGGAATA--ATGAATGGGATAAACTGAATGACCTGCTTGTAGTCCACAAACAAAGGACCTTTCAACAGCACATGGTCTTATCTATTCCAGTCAAGACTAGCCTGTTACAAACCAGAGGCAGAATGGGAGATCTTAGAGAAACTTCTTAATTCTAACAGAGAATTAGACAAGTCATTTTGTTATCTCAGGAAAAGCgataacagaaaacagagaaaatctaATAACTGAAGGGAACTCACACAGAAGTTGAATGTTGAGAACTGCCAGCATGTCTTTCCTCCTCTGGTGGTTAGGCAGT---TTTAGGATGATAAACATAAAGTACAAATCAGTAGCCCACATATCTCTGTGCAACCTTCAAGATCTATTTCTCAAGACTAGGTA----------GTGGATGGTGTCTTCACCCTAGACATCTGCTGTGACAGGACAGAAAAACAGTGGAGAAGAAAGCGGGATTT----GTCTAGGTCCCAC--TCTG-AACTCTGCTGTGTGGCTGTGG-TGACCTCACTTCTCTGAGACTGGGGTgctttatttgaaaatgaaatttgtccagataatttaac---attttcttttacattccCCCTAAGCCTCAATGTTTATGGCTGCActgatttaaaaa--gagagagaaat

a score=4963
s chr3           101503079 137 + 160039680 GAAGTAATCAGATCTTTCGGGT-ACAATCTTATCAATTAGTTAATTAATCTCTTGATGAG-TCATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTAT
s HiC_scaffold_1 175650322 135 - 233722169 GAGGTGGTTGGATCACGAGGGTGATaatctcatca----gtggattaatccatttatGAGCTCATAGGTGAATGGGTTGTTACGATGCAGGGCCCATTTGGAGGAAGTAGGTTGCTGAAGGAGTGGCTTTAAAAGGTGT

a score=3909
s chr3           101503080 139 + 160039680 AAGTAATCAGATCTTTCGGGTACAATCTTATCAATTAGTTAATTAATCTCTTGATGAGT-CATAGCTAAATAGACTGTTGGGAGGTGGGACCCATTTGGAGGGAGTGGGTCTCTGGGGGTGAGCCTTTGTAAAGTATAGC
s HiC_scaffold_1 149490156 137 - 233722169 AAGTGAACATGTTATGTGGGCACTAC---ATTTATCAATGGAGTCCTCCATTGTCGAGTTCATACCTAAATGTCCTGATAGGAGGTGAGGCCTGCTGGGAAGAGTTATGTCAGTGGGGGTGTGCTTTTGCAGAGTACAGC

a score=11895
s chr3           101503511 1700 + 160039680 GGAAGGGGCAGCAGAGTGGTCAGCCCAAGGCAGGGAAGATGCTGCAG-TTGGGACCTAGAAGCCTTCCCACATTAGGCTTGGTGAATGGTTTATCCTG----CTTTGGGGTGGGACACTGTTG-TGCAGAGGTTCCTGAGGGAGTTGTGAGCTGGCTTAGAGGAACTGACCTCCTCCTGTC-TGCTTTACTCTCT-------AAGAGAACCCTTAAATCTTAGCCAGGCATATGCATCCTACTTGTATTTC-----------------------TTATACCTA---------CATGAAGACACATAGCTACATATGGCCATGACCTGATGT---------CTAGAAACGAGTAtttccata--gactagaaggcagactccgatggctggagctcca-tagctatcttgaaccatgaggtaaaa-cttcgtgcctggaatgagggagccatagaatgctggttcac-agtgaaggaagct-------------------ttcctacgtctggtccaccctgttgagctcctgactttattgacatgggcgagaaataactgtcgatgctgttcatgcTTCAGTCT----------TCTCTCTCTGGCACCAAATTCATCCAGTCTTAAGTCTCTGTAACAAAGCACAGAGAAATGGGGACAGACA-CTCATCCA-AACTGTCTCAGAAGAGAAACGTTTGTGT---CCACAAGACATCATCTTCCACAGGTCTCAGCTCCCTAAAGTTCCAGTCACTCATCCAAACACTGAGGTGTGAGTGCAGAGTCTTGGAGGCGGGAGATTTACAGACTCGAGGCCACTGTGGCCTATAGACAGTTCTCCAG--TTCTTCAGTGCACAACAAAGTCGTCCTCTCTT------GTAGGAGAGCTCA-------TGACCTTTATGTCCCCTTGGCTCATCCTCCTGGATGGACACTCCT---CTCTGTTTCC-----CTGGATCCTAGGCAATCTGGTCCTACCTG---ATGTAATTGCTCTTCCAACTGGGggcaatagaatctaaggcaaagctgggtattgtacacacctgtaatcaaggtaggaacactgtgagttcaaggtcagcttggacttcacagtgaggctccccatctctaatcaaaaGTAGGGACACTGGTTCTTGAAGTTGAAATTGGATGTGTGCACTGCCTTTTGTGAGC--------TGGACCTTGTAAGTGACTAATGGCC--TCTATACAGAAAATCTTTCGGGTTGCCTCTGAGGTTTGTACTGTTTAGCTCCTTAATGGT----TTTTCAATTCACGATGCGGCATAGCGTG-TGATCCCTGTGCCCTGAAGGATGCCTTGTTCCAAGTCCCGACTGAGGGAATGGAGGATGATGGCTACAGAAAGAACAGCCAAGTGTGGGGCCAGGGCAAACATTTACAGGTGGCAACTGGCTTGATCTTTATttttgtcattgtttagagacagggtctcgcagcatagtcttgtctgttctggaacttgctatgtagaccagtctgacctcaaactctgagttctttctgcctctgcagtgctgggattaaaggcatgtgccactacaccaggcATGACACTGGTTTTTGGAGGGAGTTGGCAGGCTCTGTTTACAGAGCTTC------TGAGGCTCCAGTCAATGAGTGAGAACATCTAACAGGTTCTAAGTGCTTGCTTCGGGCCTGGTAATGATGTCTTAGCCCTTCAATGCATCACTTGGCTGCGAGCACACAAGG----------------------TGGG------GGACCTGGGAGCTGGAAGGGTGAGGCCATCTGCCCAGTGGCA----GTTAGTATGCGGGAGAATTGTCACTCCAGTT
s HiC_scaffold_1 111526544 1570 - 233722169 GGAAGGCGCAAGAGAGCAA------CAGGGCA-------CGTTGCAGAGTGGAACCCAGTCACCTTGACATGCTGAGCTCCCAAGACAACTTATCCTGGGGGTTGTGGGTCAGAAGCCTGCTGGTGGAGAAGACACCAGGGAAAATG---GCCAACTATGGTAAATTGTGCATTACCTGCCATTATGTACCCTTTTATTAAAAACAGAACCCTTAGCTTTTATCTGGACACATACCTTGTACCTTTATTTtgcttaaagattttttaaaaacttttatatctAGGAAGGTTGTGCGATTACTC-TAGCTA---ATGATTATAATTAGAAGTGTCAGGCTTCTGGAAAACAGCGTTCTCCTGCTGGCCAGGAGCTAA----TGATGGCTGGAGTGTGAGTGGCCATGTTGAACCACAAGACAAAAGCTGCACAAGGAGAATGATGCAGCC------CATTGACCCACCACTAGAGGGACCTAGAGGTGATGACTGTGGAACTGCCACACCTGTTCCAGTCTGCTAGCATCCCATTTTCATTGatatagaagagaaataaatgtatACTTTGTATGTGCTGCTGTTTAAAAATGCTTTGTGTCTTTTGTA----ACCTAACTGAATTTTAGTCTATTTAACAATATGCAAA--AGTGTGCAATGCCAACTCACTCATAACTACCTAAGAATGAAAATATCTATCTACTCTGCAGGACATCATCTTCCACATATTTTAGCACCCCAGATTCCAAGTTATTAATCCAAAGACAAGGAAGAGAGTACAGACTC-----------AGA---ACACAGTC-AGGCTATCCCG---------CAACTTTTCAGGCTTCTTTACCGTACAGC----CCGCCCTCTTCTTTCAAGGTAGTAAAGCTCACATCTTCTGAGCTTGGTGTTTCCTT--------CCACTAGGGAAGCACTGCTACCTTCTGTTTTCCCTTTCTAGACGCTAAGTAACT---TCCCTCCTGTAAACACGATCCTTCTCCAAATCAAatgcaataaaatgaaagataa------------------------------------------------------------------------------------ttcCAA--------------------TCTTGCAGATGGAATCAGATTTGAGCCCTG-CTTTTCTGAACTTACATGATGGATATATTAACTGAGCAGTGACTTGTTTATACA-AAAATCTTTT---TTGCTCC--AAGTGTGCATTATTTAGCTtcttaatgcttttgtttttaatataagaTGCTTCCTTATCTGATTATTTCTATGTTCTAAAGAATATTTTGTCATA-----TTACTGCATAACTGCAGGG-GACAAGTACAAATGAAATAGCCAAGTTTGGGGCTAA-----------------------------------------TGTCAAAGTTCAG----------------------CTTG-----------------TGGGGAGGACAGAGGGA---CAAATTCCTA--TCCTTC-ACTTCTGCA-----------AAAGACAT-----------CCAGAGGTAAAACTGGTTTTAGCAGGGTCATGGTGAAGTC-ATTTGCAGAGCTGCTGAAGTTGAGGTTCTAATCAACAACTGATAATATCTAACATGTGTGGAGCACTGGCCAGTTGCCTGGTGGTG--TTCTAAGCATTTAAATAAGTCACCTCACAACTACGGAATGAGGCAGTATTACTATTACGTCTGCCTGGGTCCTGTGAACCCAGGAGCTAACGAGCCAGTGTGATCTGCCCAGTGGCATACTATTAGCAAATACAAGCACTTTTACTCCAATT

a score=32933
s chr3           101505884 2137 + 160039680 AGGGCCTTGTGCATGCAGGCCC----TTCTACCACCCAGCCTCCCAGGCTTCAGCCTGTTGGAAGGTTGACAGGGCTTCTTGCAGTGTTT------GACGAATGAGCTGGAGTGGTTTGGGAGTTGGGGaaagctctgacttggggcatttgccagtttccatcatgtaaatactgctgctgagacccatttcaagctgacaccgcaacCTGTAAAAATCCTTTATACGTAATAATTGGCAGTGGTGTAGCAGGCTCTGGTGGATCC--------------------GGGCCCAGAGACTTCACAGTCGAGAAGAGGGCCAGTCTGGGTCCGAATTCTGGGACCCCAAGGCCTTGACAAGCTGTGTTCTGGCCCCAGATTGTCAGCCTTCCAGGGCTCTTCCTTGTAC-CTCTCAAG--GGTCCCATTGTAATGGGATGGGGGGGAGGGGCAAGGCAGACTGTGCAGGACTCCAGGAAG----GAGCACAACCATGCGGACAGCAGGTGGCAGCACTCTCGTGGTCAAAGATGTGCATCTCCGCCT------AATGAGGGGCCTTTGTTCTGAGCCAGAGGCTGTGTCACCAAGAGAAAGGCCCCACAGGGCAAGCTAATCAGCCTGTCCTTAGCTGACCTTCACCTCCCAGAGCCTGAAAGACAGGTCCCAGAACCCTGACAGAATGAGAGTCACTGAAGCAAATAGCGGacaca-cacacacaca---cacacCATCACAGGCACCCAGTG-------TGGTCA--------------AGAAGAGAGC-----------------------------TGAATGC-AGCACGGGTCTCCAGGCTTCTGGA-AGGCAGTTCTCTTTCTCACCTGCTGTCATCGACACATCTCATT----------------------------CATCCTCTGGGGTTCATTTTCTGCTGGGGTACC----CAGTTGTTTTGTTTGCCCTGGACCGTCTGGACTAAATAAGCAAAATTCTT-TCTCCTGCTCAACCCTA--CTGGGCAAATGG---ACTCtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtTTCAGCCCTTGAATAGCATCTGCCTGACAGGGACATTGTAGCTTTTGCTGTAGGCATGGCCATGGAAGAGAAATGTCTAGGCGAGGT--CAGGACTGGCCCAAGTCTACAGACAGGATTGGATGTCATTCCATTTTCAAAACTTGCCCCCTCCCCCCCCCCCTTTTGTCCCCAGAGGTCAGGGTCCAAACGCAGGA--GAGGGAACCTGGAACAGT-----ATGATTCCCCCTTCCCTATCTTGACCTCCCTCTCCATCCCA-------CATATGCAGCC-TGGATCTTGTACAAAGTCCATTGGCCATTTAG--CTCACCA--CAGAGGACTCTCTGTTCCAGGGGAGAGTGCAGCCACTCACAGAGGCAAGGTA----------TTGGGAGGTGGGGA----------------CGGCAAGGCAGGTTG-------------------------GAACCTCCTCAGC------CACTGAGGAATGGA------------GGAGGGGACTCAGTCCTGGTGTGGTG---TGACATGTCAGCTTCTGTCACTCTGGTACCCTCTCCCCCTGTCCA-------CCACTTCCTTTTCCTCTCAGTGCCCACCTTGTCCTG---GAGACGAACTA----CAGCTGTGACGTTGCACGAAGGCAGGCAGCTTTTCTGAAACCAAGACCCAA-GCACAGG-------------------ATTCTTTGCTCTGCGTG--------TCAGGAGGAAGGGCAGCGG--TGCGCCAGGGCTCACGTTCTGTACAGACTGTCCTTATCTAGTCTCCGGCCTTATCTCAGTTAGCTTTTCCTGGCACTCACACTGGTGGCCATCCTGGGCTTGTGCCAGTCCCTAGGAGC-TCAGGCTCCCTCCCGTCACAAGTGTTTGTTCAGTCCCACTGGTCCCTTCCCTAGCTGGAGAGTAGCGGGCGGTTGGAGAAGCCACT--------GCCAAATGGTGCCCCTGAAACTTTGAAAGATGAGAAGAGGGTCACGTCCTGCCGAGTCAGGGACAGTCGTGACACATTCCAAGTGGGTTG--TCAGATCT---GTCACCC-ACCAGGAAAGAGTTGATAAGTATTTAGAAATAGACT----TTCCATGGGCT-TCTGGCTTCAACCTTCTGGACAGCCAACCTCTTCACATCAAAGTATGCAG--TGCTCGTATT-TCATTCCACTGGAGA-CGAGTTAATACAGGCAAAGCCCTGTTCTGGATAAAAATTGACTCTGCAGGTAACATCCTGCTGATTCTGGTTTTCTGACCAGCA-CTGGGTTTGCTGGAACCTG-----------------CCTTGGAGACTAAGAGCTCTGTGATTTTTTTTAAAA
s HiC_scaffold_1 111528541 2318 - 233722169 agGACCTCAGGCATGCTCACCCAgagctctacccctgagctgcaC-----CTAGCCTCTTGTAAGTTTGATAGGGCCT-TTGCAGTGTATTGTGCAGACATGTGGGCTGGAAGTGACTGGGAGTTGCGGAAAGCTCTTGTTTGcagcatttttcagtttttatggcTTGGATACTCCCACAACTATTGATTTTTAGCTGAGAGTGCAGCTTGTAAAATTCCTGAATATTTTGTAACTGACTGCAGTACAACCAGCTCCAGTGCgtccctccacacacacacaccttgggtCCCAAGGATAGTGTGGTGGCCAAGAATAGCCATACTGGCTGGAGTTCTAGGTATTTACTGCCC-----AACAGAGTTCTAGCTCTGGAG----ACCCTTCCTGTTCCGTTTAGTGAATACTGTCTAGCAGGTCCCC--------AGCTTGGTTTGTGGCCCAGGGTG------------TTCTAGGAAGCTCATTGCCCGATC--TCAGCCAGCAGGTGGCAGCAAGCTTACAATC------GCCCATCACTGCCTCTGGAAAATGAGGGGCCTTTGTTCTGAGCCAGAGGCTGTGTCACAGAGAGAAAGGCCCTGAGGGGCAAGCTAATCAG-CTGTCCTTAGCTGACCTCCGCCTACGGGAACCCAGTGGACAGGCTGCACAA-CTTGAGAGAATAACA---ACCTTAGCAAACAGCAGAGACAGCACAGTCCCAGCTCCTCCCCTTGTCTGTGCTCAGGGCTGAGGCTGGGCAGGGCTGACAAGGTGGGAAGAGATCCCCCCACCCCAGACCCAGTTAGAAAGGCGTGAGAGCAAGAGTGGGGCCCCAGTGCTATGGAGAGATGGTCTTCATCCCAACCTGCACCTCCTGAGCCACCTCACTGTGCTGGGCTGCAGATTACCCTCTTTACCACTCTCAGGTGGTTA-TTCCTACCAGGGTAACCAGTCAGTTGTCCAGCTTGTCCAGGACTATCCTGATTTTAGCACTGAAAGCCTCATGTTCTGGGAACCTCTGTCCCTTGCAAATAAGCCACTCAGCCACTGAATCTTCTTG-------------TCCAGGCCTcgtacagcacctgccttgca-------------------tgtaGGCGTGGACCTGTGGAACAGGGGCAAAGGTAAGATTACAGGGCTGGCCAAGCTCCA-GGACAAGATTGGAATGATCCCCACATTCAAAACCTGCTCCCT------TTGCTTTTTG---CCTGAGATGAGAACCCAAATGTGTGATGGAGAGTTCCCTGGACAGTCCCTCATTTGCCCCCCATCCCATCTTTGACCTCCCCCTCTTCCTCAGTGACCTCACTGGCATCAGTACATCCTGTACA---TTCTCTGCCCTCCCAGACTCCAGCAGGCAGAGAACTCCGTgttccagggcagggtggggccTCTTACAGAGGCAAGGTGGCAGTGGCGTTGGAGAGGAGGGCAGGCTAAAGGAGGGATGCAGCAGGCCAGGAGGCTTCCCAGGAAACCCACAATTCCCCGAAGCCCTGCAGCTCCTAGCACCGATGAACATACTCCTTACTCCTGGAGCAGCTCAAACCCTGTGGTGGTGATATGATTTATCTGCTTACGTCACACTGA-------CCCCTCTGTCTAGTTCCTTCTACATCTGCTTTGGTGCATGGCATAAATAATCAGGCATGATAAAACCTAGACTGAGCTTTGGC-TTGACTGAGGGCAGAAAGTTTTGCTTAAACCAAGgtacaatgcaaaaaaaaaaaaaaaaaaatctacaatctACAGTCTGCCTGTCTAGATTTCTAGAGACAGAGCAGAATCCTTTCCAGGGACCTAGGTTCTGCACAAACTGTCATTACCCACTCTCC--------------TATCTTTTCCTGGCACTTCTGGTGGTGGTCAGCTTGGCCTTCAGCCCATCCCTGGGAATACCAGGCTCCCTCTGCACTGGAATGGTTGCTCAG----ACTGGCCCCTCTGCCTGGTTAGGAATAGTGAGGGGTT-AAGAAACCACTATGAAAGGGCAGAATGGAAGCTTTGA---TTTGAAGGATGAGAAG-GGGTCCCATCAT-CCAACTGTGGAGCAGGCATGG-GCGATCCACATGGCCTGCCTCAGTTCTTGGGTTACCCTGTTAGGAAGGAATTAACAGGGGGCTGGAAATGAGCTCTTGTTCCACATTTTCTGTGTCACTACCCTTCCCTGCCTCCAAGCTCT----ATCA---TCCTCAGTTTGTTCATATTCTCATTCCACTGGAGAGAAAGTTAATGCAGGCGAAATCTT-TTTTAGATAAAAATTGACTATGCAGGTTAAATCCTGCTGACTCCAGTCTTCTGGCCAAAATTTGGATTTGCTGGAGCTTGAATTAACTCCAGGGTCTCAGTAGATTCTAAGAACCTGATGATTTTTACTAAGA

a score=37441
s chr3           101512079 2594 + 160039680 cctcacagctgtggaacaaaaccaaccttctcttcttatga------ttgtcttgggcattttgttacagtaaagggaagccaacTGACATGGGTGGGTGGCAA--TAATATCTCCAGATTATTTTAAAATAAAGACTATGATGAACCATCTCCAGAACCTTTTAATCCCTCCATATTGAAAGTTCATAATCATTAAA------TCCTGTTTCTCTGTCTAA--CTCCTAACAGT-----------TTTCTCTCTTTTTGATCTGGCCTCTTCTAGGAACCt-------------------------cgtggctgac--gtttttttgcttatgttaatgtctttatgttgtggcatgtgtcagaacatgtcagcacactgaaacctgagccatatcccattgtgaatctgccatgttctctattcatcatctcattcatctattgatgttcattttatttttactctttagatattgtgaTTCTTGTAAATCTTTTGCAATCTTTTGTGTACTTGAAATTGTTTCAAAATGAAATGTTAAAAAATTATAATCAGAAATAAATTTCAGggggctggaaagatggctcagaggttaagagcactggctgctcttccagaggtcctgagttcga-----ttcccagcaaccacatggtggctcacaaccatctgtgatgggatctatcaccctcttctgtgtgtttgaagacagctccagtgtatttatgtatattaaataaataattaaaaattatttaaaaaaaaaaagaaATTTCAGGAATTGGC---------CAATCCTTTCCTCTGCACATCACACAAACTAGGGCATGTTAATAATCTTTGTGCAATTTCCCATGACAGGTCATTTAAGGGCATGTGGAACTTGAATTTTTCATTCTGATTAGAGAAGCATATGTCCACAAGTGAGCTCGTGGAGTTCTGGCCCATGACTAGAGGCTTAGAGTAAGG---AGAAGATGAAATCTAGGACCC-TTGAA------------TTTCAGTAGATGGTGGGAGTCACACAGACCCATTTGTTGGTTGCAC-AGAACATG--------TATCATAGCTGGAGAGTAATATTTAGCAGGAAAG-GCTTGGTTTGGTTTCAAAGATTTGTTTCCATCACTAGTGTCTTTCCTAATGGCAGTTTGTCACCAGTCTCTCAGTAC-ACCCATGT------CTTGTGGCTCTATTGTACCTTCACATACTGCATG-CAGAGTGCCTTGTATGG-CACATGAAT-ATCCTGGAGTGGCTGAGGGGACCTCCTCCT-----CTAC---------AGCCTA-------------------AGGACTGGGTCCCACAGG----------GCTCAGCAGAGGA------TGCCATTGC-----CACCTTCCCAACTTCG---CTAGAAAGTGTTAAA-----GAGGGGTTACTGACAGGGGTGACATGGCCTAAGAATCACCAGCTG--GGAGCAGCTTT--GTCTTTGGTTTTGGAGAGCTA--------GGGGCTCTGCACCTCAACACTTAAAGCAAAACTATTGTGCGATTTCTGCCCCCTTGGGAGAGGGGAAAACTCAATCCCCGTGG-------GGTCCACA-----TCTTTCACACCCGAGTATGTGGAAGATTAAGCG-----CTGTTCC--AGAATCTTCTCTACAGCAGCAGAA----------------------GACCTCGGTCCCTTTTCTCAGCTTGGGGCTCAGCCTGGTG----------------ACATGGTACCCCCACCCCGCCCCCACTGCTGCT-------GCTTCTCCCTTTGTTCTTTCCTTGGCTCTGCTGGTCCTCCTCCTCAGTTCAAATTT--CACTTTCCTG---------------------------------------------------------------------CTTGCG-----------------------TCTCCCGTGAAACCGAGTTGACATATTAATCATTACAAA-GCCGCTGAATGCTCCACTGTGCTTCATTAATCCAGAAGAAAATACC--GTCAGCTGCTACTGCCGGGAGGATACTCATGTGCCTCCCCAGAGCCCAGGATCCTGGAACTGTCTCCGTTTCCATGAGTAACAAAACAGAAGGCCTTTATGGAAGGCCACGGTGACCCTGGTACTGGATGGGCATGGGAG---GCTGAGAATGTGGGTGGGCTGCCATCCCTGAAGGCAGAGGTCATCCGTCATGGACCCTGCCAGACCTTGGGCTGGTCAAGGACTCTAGT---AGAGGCCAACCTGTAAAATCCCGTTAGGGTTGCCAAGACCAGAGCAATGTGACTTTAATAAGGTCAAAGTTTGGTGATTTTACAACTTTAAGGATGATAAGGTTTTTAGTCACATG--GGAGAAAGCGCTAGAGAGGGTCTGTCTAAATTCTCCTGGTGAGATGCTGGGGTGTGGTTAGGCCTGGCCTGGGGCcagactctggaggctgactgctgagctggggtca----agcttcccagctctaccttctgccctgcacgtggacaaagcctgtcttcacatctctggcctcTGGAACTGATAGAGAAA-TTAATCTGGGCAGTTATTTTCAAACACAGGGAATCCTTGGGACAAACTGACTTAGGTGGAAGCAAATGG------CCTGGTCAAAGGTGTCACCCTGATCTGGGACTTCCACCATGCCACCCACTACAGTAACGGCACGAGGA-AGGGTTGTTTCATTATC------------AAGTGAATCTTTCCATTA-CTACCTTCCAGCCTGGGCTACTTTATTGCCTCCCTGGGTCTGTCCATCCTTCTACTGTCTTCTCTGGAAAAGCACTCCTAACCATGCCCTTCTTTCCTACCT-GAGAGAGATTTCAGCTGCTCCAGTTTCAGTCCTAGAGCAGTGTGCGTCTC
s HiC_scaffold_1 111533786 2739 - 233722169 CCTTGAaaccatgagacaaaataaactttct-tcctGGTAAGTTGATTTCTCTCAGGAATTTTTTCACTGTCATGGAAAACAAAT--------GTCAGTGGCAAATGGGTACCTTCACATTTTTGTGCTTTTACCACTGCCAT---CTGCCTCCAG--------------CCTGTAATGAAACACCACACCCTTTACACGACTGTCCATTCTCCCTTCTCAAAGCACCTGAAAACCACCGTCCTACTTTCCATCTCTTTGAATTTGGTCATTCTAGGTATTTTCTCCAAATGGTGTCATACTGCATTCGTCTATGACCAGTTTATTCACTTAGATTGATGTCTCCAAGGTTCACCTGGTGTCAGAATGTCCTTCCTTTTTAAGAC------------------TGAACACAGCAAATTCTCT--TCATCCTTTCAGATCTCAGTGGATATT---TGCGTTTTCACCTCTGAGCTATTATGACCTTTGCACTGTTTTTACAACCTTTTGtgcatttataattatttcaaaataaaacaccaaaaa--caggatcagaaataaaattt-gtgaatcgGCTGATTCTTTCCACTGTTGAGGATGTAAACTAGTATT----GATTGTTGACTTTGCCCATTTTCCTATCACAGAAGTAATG--------TAACCTTTGAAAGGGCACATACCCCTGactgatgt-tttgaaa-----ttttgtg-atttttttctctttgaaa------taaaacatacttgagaaaagaaagaaa-----gaaaaaggcacacAGAACcgattttttcctttctgcttc--------tagaGAA-----GCAACATGTATGTCAG--CCCATTGCATAGTAGTTAGTATTTGGTAAAACCTGACTATTACAGCCAGA---------------------------------------------GTCATTAGAGGCttagacaaagagaaagaaaaggaaacttgGAGCCTGTTGAAGCTGACAGGTTATTTCAGTAGACAATGGCATTTACATGGAGCCAATTCCTGATTATGCCAGAGTATGAAACCTCCTAATACAACCTGTGAAAAATAATTAGCAGGAAAGCAAATGCTTTGG----AGAG---CATTTCCATTGTAAATGTCTTTCCCATTGGTGGTTTGGCTGTGCATGCCCTGTGCCATCTGTGTAATAGGCTCATGACTCTTGAGTGGGTTCACGCTCAGTGCGACATTATTTCCTGTGGGGGCACCTGGACCACCCAGCAACAGACAGGGGGACTTTCCACTGGAAGCCACCCTGGCATGGGCCTGCAGGTAGGAAGGGCAGAGGAGGGTTTGGCTTCAAGGGCAAGGTGGAGGCTCAGCAGAGAAGCTGCATGCTGTGGCTAATGCACCTTTCCAAACTTGATTCTGAGAGGTGTCACATTGCAGAAGGGGTACTGACAGAGGTGACAT---------ACTACCAGCTGCCAAAACAGCAtcaagtatgtgtgtgtggggggttgTTTAGTATGGCGATCTTAACAcca-catttaaa----------------atttct----ttttggtgCGGGACTCCATACATTTCCTGAAACATTCCAGGTCCACAAGCATCCTGTCCCTCC--ATTATGTAGAACTTTATGCAAACAACTGCTCCTAGGAGGCCTCTCCTAGGTAGCTGACTTGGCCACCTGCCCATGAACATGACCTTGAGCAGCCCCCAGTGCTTGGGGCT--GCCTGATGTACCCTTCAGGAATAAGTGTGGctgccctcctcctctctctctgcttttctcttgttctttttctttcccttttttcttttcccttctcatcC-CCTCCTCTGCTCACCCTCAGCACTCTcctgtggtgttttgttttgttttctttttgtactcaggatcaaactcacaaccttgcatttgtcaggcaggtgcttgtgctgctgagctaaacaacAGGCCCTCTCTTATGATATTAATTTGACATATTAATCATTACAACCACAGTTAAAAGTTGTGCTGTGCCTCCTTAATCCAGAGGAAAACACCATGTCAGCCAGTGAGTACTGTAGGGTACATACATTTTTCCGGAG-GTCTAGGAGACTGGAAATTTCTCCATTTCCCTGAGTAACACAACG----------CTGGAAGGTCACAGTGAGCCAGGTACTagatgtgtgtgggggtggggtgggaacgTGGGTGGGCTCTGATCCCTGGAGGTCTAGGTCACCGGGCACAGACTCTGGCAGACCTTGGGCTGTTCAGGGATTCCAGTCAGAACGGCTGAGCTGTAAAATCTCATTAGGATTGCCAAGACCTGAACAATGTGACTTTAATAAGGTTAAAGCTTGGCATTTTTACAGCTTTTATTATGATAAGGTTTTTAGTCACATGAAGTGGAAAGAACCAGAGAGGATCCATCCAAACTCAGCTGGTTAGAC-TTGAGGTGTGGCCAGGCCTGGCGTCCTGCCAGCCTCTCGACACCATCT-CTGG--TGGGGTCAGTGCAGCTTTCCAGCTACAATTTCTGCCCTGCACATGGATAGAGCCTGTTCGCCCATCTCTGGCCACTGGAACTGATAGGGAAAGTGAATCCAGAAAGCTATTTTTGGACAGA-AGAGCTCTTGCGACAAGCTGGCTTACAGAGAACCGAATGTCTATTCCCTGACCAGAGGCTTCACCCTCACCTTAGTCTGCCTCAGTCTAACCTTAGTCACCCACAGTAAGAGTAGAGAGTCACTTGATTCCCAAAGCGCGGCTGAAGCTGATGTTTTTGTTAGGTACCCTCCCACTGAGAACACGCTATTGTTCCTCTG---------------------------CTGGGAAATCTCTCCTCCCTTTGTCTTCACTTCCTGCCCGGAGAAAGATTTCTGAAG-TCAGACCACATTTCCAGAGTAGAGTCTATCTC

a score=45785
s chr3           101515409 2480 + 160039680 GAAGAGAACTTCAGTGTCGTGGCCTCGACTCAATGGATCATCTTTTACTGGTGA--------AAAAAAGTATCATTTCTAAATGGGTCAGTTGTTTCCTGTGGGTGAAATTGTTGTCAGCTCCTATAT-CGCAGCATATGTCATAGCGTGTCCGTTTATGTCAATTTCAGATACAGCAGATGGCCACATCTATGTCCATGACACCGTCAGATTGACTTGTTTAGAAAGTTTACTC----------AAAACTCAGCTCAGTAGCCTTGGTGACATGCTTAGTCTGT-TGTCAGAGGTAGCACGAGGCCATTCAGAAATGCAGAGAT---TCAAGGTCTCTGGCCCTGGAGAATCTCGCTAGCCGCC--AGACACATGTTTAAGGGCAGAGAACACATGGAATCCTTGCTCTCGTGCTGGCTGTGTGTTAACACGTGGGACTGTGAAAATACAGGCATGGAATACTTCCATCAGAGACT------ACATCTGGGTGTA---TCCTTGATGAAACACAGACAAACCGCAGCTG----------AGGGGTACAGGGATGGATGAGACTGTGGCTC--TAGCATCATGGTACACAAGTCACTC--TGGGCTCACAGGTTGGTGACGGTTAGTGA--AGCAGGCAGTTCAGGGAAAGAGTGGCCTTCAGGAGATCAACCTTGGCTATGCTGGTGCGCGCAGGTCTTGGGGACTCCTGAGATCACATTCTTTTGGGTTAAGAGCTGGAGTTCTTTTTCTGGGCCCAAGATGGACCTGAACCATCAGGATTCTATGG---AGTGGAGCTGGGTCTCTGGTGAGGCACTGGGGCCACTCTCTCCAAGGATCCTTGTTTGATAGGCTTAAATTCCCTAGCCcaactgttttcaactggtgggttgtgaccccttcagaggtcaaatgacactttcacaggggtcacatttcaaataacccgtatttacattacaattcataacagtagcaaaattacagttacaaagtagtaatgaaaataattttctgactggggtcagcacagcatgaggacgtgtattaaaggggctcagcactgggaaggtggagaaccactgCCCTGGCCACTTTGGACTATGATGGGCCCAGATTCTCACCTGCCCTCAGCTCAGGACCACACTAGGACCTCTGTG-------------------------------ACTCTCCAGGTAGCAGGACTGTGGGTGGAGGGCTGATCAT----------GAACGGTCGAGTGCAACCTCAGCCCCTCAGTGT---TCAGCAACTGAGCTCAGCAATCT---------------GTATTGGAAAACAGGAAATGA------------TGGGGTAGT--------------------------------------AGAGTG---GAAGGCCAGCCCATGCTGCTAGTGGG-GAGAGTTGTGGATCCTCCCCTATGCTTG-CCAAAAACCTGGACGAGGAGTAACATTCAGAAGGGCTCAGGGAGGCACCTGAACGAGGGCCAG-CTGCTTTTACTCTCCGATGAAT-CTCTGGATCAAGGCTCTCCTTGCCAGGGGGAAGGAGACATTCTTGTGCAAGGCCTTCCCGACCCCCACGTTTCCCTCAGCACGCCCAGATAAGCATTCTCCTTTGCCCCCCAGCTCCTAGCCACTCCCCACTTGTGAAAGAGGAGCGTGACTCACATCTATGGGGAAGGCAG------TTAGGTGAGCCTAActcaaatgccaggcaaatgctaatagcaggcttttctatgaatagc------agccccGTTGTTCCCTGGAGGCTGAGCCAGTGCCTTCTCATCCAGAGTACATTTGCGCTTTTCCAATTTACGAGCT-------GAACCCTGGGCTGCCTACCTTTGGTCCCCTCAAGGCCAGCTCGGTGTTCTTTGTTCCCTAAAGTCTCCCCAGAGTGAAACATTAACAGGCGGTGGGGCTAAAGGACCTGGGAGCCTCGGAAGGCAGGGCTGGAGCGGAAAGGATACCTGGAGGGTGTGTTGTTCGCTGACCTGGAATTTTCCATTCCTCTTAAGCTCACATGACCAGGGCAGTGTTTCCTTGAAGTCACAAAACTAAGATGGCTG-CAGGGTGGCATGTGCTAAATAGCTGGCCGCTGACCA----------CAGCCTTGTGGTTACCAAGGAGACAGAAGCTCTGTGGTGCGGCATAGTGGAAATGATTAGGACTTTGCCCAGAAGGCCAGGGACTGG-CTGTGGATGGGCTCCCACAATAGCTTGAGAAATCCTGGAGATGCCACAAGATGTC------CTGTGTTTCCTTGGCT-----------GATGACAGCACAG-GATCCTGTTTTGCTCTGA----------CAGCAATGGCTGAG--------------TTTAT--TGGG--GCAGGGGCTATATTTCTTTGTCACCTCCAGGAGGTGACTACGGTCAGCCTCCTCTGCTTGGTCTCCTTGCCTTCCCTACTC-----CTGACTCTCTGTCCCT--GTTTCCTGTCCTTACTAAATTCCTCTATTTTAAGGCAAAGGACTAAGCCAAGCTACACGTTGGTCACGTGTCTTTGAAGGTCGACGACTCACCTTTGACACTCTCAAGGGctgcctctttttagtca----tgtgacccaggtctaattatttggtttctttggagatcgatgtcctcatatgtcacaagggaactatattaggac
s HiC_scaffold_1 111536698 2404 - 233722169 GGAGACGGCTTAAATGCCATGCCCTCTGCACA---GATCATCTTT-GCCCATGACCCATAGTAGAAAAGTGTGACTTCTAAATAGATTACTAGTTTTTTGAAGTTGAAATTTGCATCATTTCTTGCACACACAACATGTGTTATCATGTGTCCATTAGTGCAAATTTCAAATGCATCAGCTCATCTTATTTATGTCCATTATGTCATAAGGCTGGCTCATTTAGGATGTTCTCTCCTCAAATTGGACAGGTccacttcacaatatctgttaaaTACTTA---TGTGTGTCAAGGGCGGCACTAGGTCTTtcagaaatgcagagagagataAGGCTTCCCCATCCACAAGGAAC-AGCTGGCAGCCCAAGAACTGTGGTCAGATGTCAGGTGCACACAGAGGCTGTGGGTGCATGCTGGCCATGGGCT-----------CTGTGGGG-TACAG-CGCAGCACACTTCCTCTGAAGGCTTGTGATCCAGCCAATTGTCATCTTCTTGATGACA-ATTCCCAAGCCACTGCTTCATGCCCACTAGGTGTACAGAGTCCCCTTTGCCCACAGCCCACCGCTATTATGACATGCGAGTCCCTCACCAAGCCCACAGACTTGTGAAGGCTGGTGACAAGAATACAGAGCAGAGAGA----------CAAGAGA-CAGCAATGGAGAAACT--------CAGGTCTGATGTGTTCCCAAGGCCATtatgtttttgaaacagagttgaAGTGTTTCTCCTGGGCCCAAGACTGATCTGAACCATCAGG----CATGGCTGAGTACAATTGACTTTCTAGTTAGGCCCTG---------------------------------------ATCCCTTGGCCT------------------------------TTCAGGGCTCG--------------------------TTGGATGAGCGGTGTTCAGATTA----------------------------------------------------------------------------------------------GGCCCAACATT---------------------TCAGGCCACTTAGGACCATAGTGGGTCCTGCTTCCGACATGGCCTCAGCTCAGCACCAGGCTAGACCCACACTGGACACTGGAGGCAGGATCACAGGAGCACGCCATTTCACAGGGGACAGGGCCAAGTGTCGAGTGAGGGTCACACCCTACAAAGCAACCTCACACACAACCTTGACCCTCAAGTCTGTCTTAGCACACGCGCTCTGCAACACAGTGGAGAACAGATAGTTCTGAAAGCCAGGGAAGAGGGGCCAGGTGTTTGGGGAAGTTACCCTCTCCACACGCCCGATTGGCTTTCCAAGTCCTCAGGATGTGAAGAAGACAGCCTAAGTTGCCTGTGGGTAAGGATTGTGCATTGTACCCTGTGCTTGATCAAGAGCCTGG-------GAAAAATTAAGAAGGGTCCGAGGAGGCACCTGGTAGGCAATCAGGCTGCTATCTCCTCCAGGTGAGTGTTCTTAAGCCAGG-----------GAAGGCAAGGAAACATGGTTGGAAGTGGGGTTCCTGGC---------TTCCTCAATTAGTTCAGGGAAGCACTGTCCTTGGCCC---------TGGCCACTCCTTTCTCATGAATGAGCAGTGTGACTCACATCTGTGGAGAAGGCAGCTGCAGTTAGGTGAGCCTCATTCAAATGCCACGCAGATGCCAACAGCAAGCTTTCCTATGAATAGCTTCTTTAGCC----TTTCTCCAGGAGGCTG---CACTGTGTCCTTATCCAAAGTACATTTGCACTGGGCTCATTTGTGAGCCACATCAGGAACCATGGGAGGGCTACCTTTGG-CCCCTCAAGGCCAGCTGCATATTCTTTGTTCCCAAAAGCCTCCCTGAAGTGAAATATTAACTGGTGGTGGGACAAAAGGGCTTGGAAGCCTTTCAAGGCAGGGCTGATGAAG-AAGGATACCTAGAGGGTGTGTTGCTCACTGACCTGGAATTTTCCATTCCTCTTACGCTCACATGATC-----------------AAGTCACAAAACTAAGATGGCTACCAACCTGCCATGTGCTACATAAGCAGGCAGTGACCACCACAGGTACCAGGGCTATCATTGCTGAGG-GTCATAAACTCTGTGATACAGTGTGGTAGAAGAAATTAAGGCTGTGCTCAGCAGACCAGGAGCTGGACTGTGGCTCTGCCTCTATAGTAGCTGGAGGAACATCGCAGAGGCCACTAAGAGTCTCATGTTTCTGTTTCCTTAGCTATAAAATACAGGGCTAGAACCCAGAGATCCTTTCCGGCTCTTAACTGTCTCTGCTTCAGATGCTGAGACCAATAAACTCCATTTACAATGGGTTGCGGGAGCCGTGGCTGTTTATCACCTATGAGAAGTTATTAGGTCTGCCCTTCACTACCTTCacttctttcttcctgtcctctCCATCTGCCCTGCTGCTTCTTGGCTTCCTCTCCTTCAT------CTCATTCCTTATGTAGACTTCTAAGCTAGATTGCAGGAT-------TGTATTTTGAATCGAGAGACTCACCTGTGCTACTTTCTCAACCTGCCACTTTCTGGCTATGTTTGTAACCCAGGTCAAATTATTGGGTTTC--TGGGGATCAACgtcctcatctataaaaaggGAATTAGGttagagc

a score=21071
s chr3           101518589 650 + 160039680 TCTTAGTAGATGCTCAATcttaccttccttctgtctcactctggatgtctgtaacacaggggggtaagaaaccctactccattagtgt-gtggtgatgattcactgtgatgatgtgtgt-aggcacctgtctcagtgtttaatagcaagatgtatagtaaatATGGC---CTCCCGGGCACCGCTGAGGTTGGATGTC-CCCAGAACCTCCCAGGCAACAGTAATCAGGCCTGTCCAGGCATTCTCAACAGAGACCTT-GAGATGGATTGAG-TGGCTTGTGGCTGCAGCGGTTTGTTTGCTCCTGGCTCCCATCCACAGACATTTACTGGGGCCTCAAAACCCATTAGGCACTCAAGCGTTCAGTCCTCTATGCATTTCCCAGAAAAGGCAGGCCTTCTGCTGCTTACATTACAGAGTCCTCCTACAGTTTACTGCTTCCCGATACCTAGTGCTTTCTTGCCCCTGTTGCTTGGCCTTGGAGACCTGCCA-TGTCCTATAGCTGATCTCATGCTATCAGCAAAAGGCGAG--GGAAACAATGGCCTCTTCCTGGGACTTTGCCCT-CCGTAAGCTCCAGGACCACACGTGCTACA-GCTGGGCTGGAAAAGCAATGCCTGCAGCTTCTGAGAGTGCTCAGCTGAGAAACGTAGGA----CATACAC
s HiC_scaffold_1 111540355 651 - 233722169 TCTTAATAGATGCCTCATCTTAACTTCTTTCTGTCTCGCTTTCTCCATGTTTAACAGAGGAGTTTAATTAACC-TATGGCATTAGCGTTGTGGTGAAGATGTACTAATGTGACATGGGTTAAACACTCATGGCAGTGTTTAACTGAAGTTTAGCTTGTAAGTAATGAATGCTTCTGGTGAGCACTGAAGATCCAAGTTTCCCAGGGCCTC--AAATCTGAATTTCAAAGTCTTTCCAGTCATTGTCAGTGGAGAACTCAGATATGGATTGAGGTGTCTTGTGGTAGTAATAGCGTCTTCTCTCTGGGCATCCATCCATACACACTTCTTGGGGCCTCAAAACCCATTAAGCACTCAAGAATTCAATACTTCATGCATGTCCCA-AAAAGGCTTGACTTTTGCTGGTTAGATTATAAATATCTCTTGTAG--TACGGCTTCGCATTACCTAG--------CTACTCTGTTGCTTGGTCTTGGAGACTTGCCATTGTCACTTAGCTGAGCTCATGCTATCAGC-AAAGACAAGCAAGAAGCAATGGCCTCTCCACAGGACATTGCCCTCCCACGGGCTAAAGGATCACACATCCTATGTGTAGGAGTGGAAAAATGATATCCCCAGCTTCTGAGGATGTCCAGCTG-GAAATGTAACACTAGCATACAC

a score=16310
s chr3           101528091 782 + 160039680 GGAGACCTCAGGCTTGAGACTCCAATGATAGACAAGGGCCCTGAAG--CTTGGTAGTAAGCCGGAAGAACTGTTTTTGGAAAGTATAAAACTACTTAAGCAACAACTGT---CCTCAG-TCCCTAATTACACCCTTGCTGAGGAGGTCTGGAAGGGCTCTAG-GGGCCTCTGGGCTTGGAACCAGCTCCACTTAGGTAAGTGCCCTGTGCAAACAAGTCTCTAGGGGCCACAGACATGTAAACAGCTCTCCAGCTGACACTCAGACCCAAGCTAGGGAATAAAACAAGTGCCTGCAGATCCCAGAGTC-----AGAAGC-CAGCCCGGCCTTGTGCCAGGGGAAGGGATCCCAGGAAGTTTGCTGATTCACAGGG---------GAACAAACCTCGAGAAAGGAGAGAGGCCAGTGGGGAGAATGGGTGTGGGAGCAGCCAGTGGGGACTTCCTGGGGTAAGGGCTGGGATGGCCTCCCTGAAGAAGAGTGTTGCTTACAGAGC---AGAGAGTGAAATGGAA--GAATAAAGAGGCAGACACCCCCCCCCCCCCCCGTGCAGTGTGCTCGGGGAGGGGGGGTGGGGGGGTAGGGGGAGCC-AAGGCAGCAGCTCAGTCTC-CCTAAGGAGAGGGCATTGGGCATTGTAAGAGGCAGGGGATGAACACACGCATGCCCCTTTGTGCTCCTCTAC-AATTAC--------------AGCTGGCTGAGGCTGGCGAGGATCAC---TGAGTATCCGTGatttaagacctttgccccgtaccataaaaatggctaag-tggcaaatgttatgttctatgtatttttaccacaa
s HiC_scaffold_1 111547628 766 - 233722169 GGAAATGCCAGGATTAAGAACCAGCTGAGAAGCAAAGA----GAAGGGCCAGGTAGCCAGTCAGAAGACTT--TTTTGGAAGCTCAACAGTGACTTCAGCAACAGCTCTTCTCCTCAGCTCCCTAATTATGCCTTTGCTGGGAAGGTCTAGGAAGGCCCTGGAGGGCCTCTGGGCTGGCAACCATCTCTGCTTAGGTAACTACAATGTGCAAATAAGCTCCCAGGGGCTACAGACCTGTAAACAGCTCTGTAGCTGCCACTCAGACACAAACTGGGGATCAGTGGAATTGCCTTCAGATCTCTGAGACCAGGGAGGGGCTTGGCAGGGCCTTGTTCCAGGTGAAGAAA-ATGAGGAGGCTTCCTCACATGCTGGGGGGGCCCAAGGACAAGTAGTGTAGAAGAGGTGAACCCAAAGAGCAG-ATCAGTGTGGAAGC-------GGATGCATCATCAATATGAAGCCTGGATGGCTTCATTAAATACACAT-TTGCTGACAAAGTGAAAGAGAGTGAATTGGGAGGGACtaaagaagagggga----------------------------aggagagaaggctGAGGTTGCACAATGAGCCAAAGGAATCAGTCCAGTATCTTCCAAGGAG------TTTATTGTTGTAAGGGGAAAGGGGCCAACA--------TTCTTGTCTGCCCCGTCACAAATTACAATTCAAAATGAGTAGCTGACTATGACTGTACAACATGATGTGTTAATAT-----ATTCAATACCACCAAACTGTACATGCAAAGTGGCTCAGATGGCAAATTTAATGTTGGACATA-TTTTACCACAA

a score=32952
s chr3           101529413 2329 + 160039680 GAATTTCAGGATTAGGTTTTTAACACATGGGCTTTGGGGGCACATAGCCAGCCCGGAGCACTTTCTAAGTGCAGCCTCCTTG-----CTTCTTGCATGGGCTTGGCAGCCCTCATGGCTCAC-TTTTATCTTCTGTCCTCACAGTTTATGCCCTTATGGGGAAACAACAACCAACAGGGCTCTCCTGGGTCAGCTGAGAAAACCCGCTGTCAATGCTGCCATGACTGGGACGATGA-GACCCGTCTAAAGAGTCCACGGGTTCCACCCACCTCCTTGTCTTGTTTTCTAAAGGGAGTATTTATTAGTTTTCTTTAAAAATTTTTTTTCCAGTGATCTGTTGTTTTATGCAAAACTGG-ATATCCTGGGGTTGACCATAAAGGGAGTTTCTAAACTACAAAACCCATTTTCT-ACTGACTTCATCATGA--CCGCAGCTATGTTCCTGCAAGAAAAGAAAAATCTCCAGTAATCACAGATGAGGCTCTGTACCACAAGAGGAGGCTAAGCAG------------AGGCAAATGGGATCACCTGCAGTTCTGGCAAGATTCTACCTGCCTAGAATCAAATGACAGgcag--------------------ggagagagcaaaaaattgcaaagggcacagggttaggacccagctctgtggcatgcaagccttagtataatgctgggtaaactagttgacctctgacctttagtttccctgcccacaaggagatactaatcatgcctgtttggaagggatactgttgaggcttctgtgtgactttgttgtaaagtgtttggcgcaTAGTAGGTCCTTCTGATGGTGACGACTACTATGACCTACTGGCTCTCTTCTGTTTGCAGAGAAGAATTGA--AGAGCCTGCT----GTGTGGCCTTTGTTCC------CTGTGGGCCCTCTCCATTACCTGTAACGGCTCTCGGGCCTGCAGAACACAGCCAGAGACTGACAATTCTGTGCTTTGTGACTTTGCCAGTAACCCTCCCAATCAGCTCTGCCCCACCCTGTGCCATTAAAAAAAAAACCCAAAAATCCCAAAGGCTTGAATTTCCATCTAACCCACCTTCATACCAGAGACACCGCAGGAGAGCATTCTGGtcttggagacctggactcacttatcccaggcttgccaccaagtctccacatatgatctggaactcctgatctttctggtctcaccttgctgggtactgattctaggtgtgtgcccatatacagtgccggggatcaaacctacagtcttgggcacactgggccagcactccccccaactgaaccccatacccagcccTGAGGATTCTCTTCTGCTAATCACTTCTCCACTCCTGGGTTATGGGGGTTCCTTATCCATCTTGAATTCAAAGTCAC--TGtttagcaacaaagaccacaacatgcccagttatacttgaatttcagataaaaa--gacaacattttg--atacgtattccctatgtaatatttggagtgtaATACATTCAACAGAAGCTCA----TCTGTGGTACTTGTC-GGCATTCTTCCTGGA-----ACCCACAGGCATTCTC--TGTTCCATCGGAGATGTG----GCTGGGCATACCAGGTGCAGCTTGCTTTTTCCTCTCACAAA-GCTTTCTTCTC----CGCATTTGGTACCCAAGCACTGTCCAGCTCAGAAGCAGCGAGTATTCAC-TGGGTGGGTTTCAAACAGCCGCGTGTGCGTTTTCTTTAAAAACTGAAAATCTGTGCATTTATTTCTGCTGAGGTCTGTAAAGATTTCATTCGCCGAGCCTGTTCAATCAGACCT---CCCAGTTCCATCCTGTTGCAGCTGGCGAGTGTTTGAAGCGTTCTGCTTTTAAAGCACA-----------------TATTTATTTAACTTAATTGGCTGCTAGCCTATCACTTGGAGATAC---TTTGTCACTCGATGAGAGTGACAAAGGAACATTCATACAGAACTAGCCCACTGGTCACCTCTGGCATTTAGAGGCTCCTTGGC--CTATTG-TCCTTCTTAATATTACCAATGTCGATTTTT------TTAAATGACACCCCCTCCCCAGCACCAAAAGATGCTAATCTGATGAGTCGCCAATTTTAGTGGGGGAGAAAAACAGCAGAAACACTGGAGATGGAAAGAAGGGGTACTAG-AGGGCAGGGGATTAAGGCAGTCTTCAGTCAAGTTGA---------ACTTGAACACACTGACAGTGGAGCAGCTGTACAAGTTGCCCTGGGGAGGAAGGAGGCTGGGGAGAAAAGCTGGGCTGACTCCTTGCTTGTGCAGGGGGAGGTGGGGAGGAGGCCGTCCCAGGAAGGATTAGAACAGTTCTTTCCATCAGGAGACCTTTGCAGTGTCTGGAGCACCCATTCGCTTGCTTGCTCCCCAGGAAAAACAAAGATGGAACCACACCAGT
s HiC_scaffold_1 111549522 2069 - 233722169 GAATTTGGGGATCAAGTTTTCAACACATAAACCTTTGGAGGACACTTTCAAATCTTAACAACTTCTAAATGTTGCCCTCCAAAAGATCTTTTTTCCCGG-TTTGGCAGCCTTCCTgcttagcattttattttctgttattagcAGTTAAGCCTGTAGAGGGAAAGAATAGC----AGGTCTTT------TTGACTCAGGAAAAATGAGGCTGATGCTA--GTGA--GGGACAAAAAAGAAGCTTACAGAGAATCCATAATTATCATTTACCTTCTTATCA-GTTTTCCAGAACGACTTCTTTTTA-----CTTTAACAATTT-----ACAGTgatctgttatcttgttttaaatgGGCACATCATAAGGTTGACAATAAA-------------CCACAAAACTCATCTTTTCACTGACTTCATCACAATGCCACAGATGTGTTCCCACAGGAAAAGAAACCCCTTCGCTAATCAGAGATGAGAATTCATTCCG--GGAAGAGGTTAAGCAGTGGCCAGTTCTGCGGCAAATATGATAACCTGTTATTCCAGCAAGATTCTATCTGCCTAGAATCAAATGATGGTGGGATAGTGGTGAATGACATAATGGAAAGAGCAGAGGATTTGGAGTGAATCATGTTTGGATTCCAGCTCTACTTC-TCAAAGC--TATTATAATGTTCAGTAAACTAGTTAAACACTGAACTTCAGCTGCCATCCCTATGGAGAGACAATAGTCATGCTCATC------GGGTTATAATGCAGCTTGCATGAGGCAATGTTGTAAAGTCCTTGGTATATCATAGGTCCTTGTGA--GTAGTGGCTACTTTA--CTGCCAGCTCTCTTTCCCTTAACGATAAGAACCAACTAAAATCTACTAATGGTCTATTGTATGCTCCTCCCAGCTATAAGCTCTCTACA-TACCAATAACGAATCCTATGTACCAAGTACATGAAATGTGACTGACAG-----------------GTGCCTATAGCTTCACTGATTA---TTGCTTTGCACAGTATCACT---------GTCCAGA-------------TGAACGATGATATCTCCAATTTTCATAC---------------------------------------------------------------------------------------AACTCCT-----------------------------------------------------------------------------TTTTGAAGAGCTTGAG----------------------------CCCAACCC--AAGGTTCTCTGCTGCTGAT-----------TCCTAGGTCAT-GGGGTCATTTGCATTCTTTGTATTTAGGATCACCACATTTAACAAATAAAGCTACAAGAAGcttagttaaatttgaatttcagataaaaagtgagaaaatttTAGTATAAGTATGTACCATGCAATCTT----------TACATTAAAAAGATAATCAGTGTCCTGTAGT--TAGTCTGACAAGCCTACTTGAACTTCACTTACA-GCATTCTCCTTGTCCAATTTGGAATGAGCACATCTGGAAACCTCAGAT---GATCCCTTCCACTTCTGATAAATGCCACCTTCCCTAAGTGTGTCTGG-----GAACATTCTTTAATTCAAAGGCTTTAAGTATTCATGCAGCTGGATTTGGAATAGCCATACATGCATTTTTCTTAAACA-TGAAAATCTATGCATGTATTTCTGCTgagatctgaaaatattttacttagtgTTGCTATTCAGTAAGCCCTTTATCCAGTTTTAACTTGTTCTGATTGGCAAGGGtttgaagtatttaatttttaa--cacaGTTCCTTTTCTTTCGATTAGCTTTTTAATGTAATTGTCTATGAGTCAATAGTTTCAgaatatttgttttcaatttgaTGAGAATGGTATAGGACTAT-------AAAATAGTCTACTGATTTTCTTTGTC-CTCAGTGATGCctttgcttttattgttctttcttAATACTACAAACTTTGGCTTCCTGCACGTTAAATATAA----------GGCCCGAATGGGTGCTAATCTGATGGG----CACTCTTCCT----GAAAATGGTTACAGAAACACTGATGATGGAGAGGAGGGATTAAAGAAGGGAAGAGCATCTAGGAAATATGAGGCCAAGTGAGAGCAGTCATACTTGAACCTGATGACCAC--AGCAACTCTG--------CTTGGGGAG---GGAGGCTACAG---AAGGTTAGGCTGGCTCCTCAGCTGTGCTTGAGAGGGC-------------TCGTGGAGAGGGTTAGAACAGCTTGCTCCACCACGAGCATCTCATGGTCTCCAGATGATCC---CATTTGCTTCTTTTCTGGAAGAAACAAGAAGAGAAGAATACCTGT

a score=7332
s chr3           101537933 380 + 160039680 ctctctctctctctctctctctctctctctctctctctcCACACACACACACATGCCTAACTAACCTCTCTCCCATACATTGGGTACCTATACGGGGAGTGTCTGTACATGAACTCCCCAGTCTTGACTTAAGCCTCTTGCTTTGCCTGTGATCTAGAGCTTTGGGCCAAGCCTGCTAGTTCCATTGCTGGCTCTATTAAAGTCTTACTTTCTGGAATTTTCTCTAGTTTTTATGCCTAAACTACTTTTATTTATTCTCATGTCCATCTTGAGATACAGAGATACAAGACCAGAACCTATACTGTGCCCTGTCTATACAGAGACACTAACCGTCCACACACGGCTATGCTACCTGTGTGCTTGTTGTCTCGCCCTCTCTC
s HiC_scaffold_1 111559134 339 - 233722169 CCCTGCTTCTCACCCACCCCCCTTACCTCTCCCTGCTACTGCAC-----------CCCAGCCCATCCCTTCCCTGTTC-CTGCTCACCAATAC--------TCTGGATTTGAA--------TCTTAACTT--TCATCCTGCCCTGTCTG-GACCTGGGGCTTTGGTTCAGGCCTACTATGTCCATTTCTGACCAGATTAAAGACTTACCCTCTGGAATTGCCTC--AGTGTCACCCCAAAGGCAGAGCTGTTTATTATCCTCTCCAGTTTGAGACCCAGAGATAGAAGGAAGGGGCGTAGACTCCAGCCCTTCTGGGTAGAAACACAAACCATC------TGGGTGTG--ACTTCTGTGATTGCCAcctacccccccccc

a score=51666
s chr3           101550665 3615 + 160039680 CATCTTATGGTGAGAACATGAAGGGTTAGAGAGGATAATCTCTCTCTCAAGATCTTACAGTGTGAAGTTGTCTTCCTTGGAAGGAGAAGCAAGTTTTCCAGCCGCGAGCAGCGGATGAGCCTAGGAGGCCAGGGGAAGTGGCCATTGTGCTAGTCAAAGGATGTTTTTGTTACATTTAGAGAAAGATGCCCTTCCCAAAGTAGCTGAGCCATCAGTGGTCCTGCGGTGTGACTAAGCAGGGTAGCAGGCAACAACACCCTGGGTGCTTC--ATCTGTTGCCTTTGGCTTTGGTACATAAAACCATTTGCTTCGGAAACTA-TCGGTTGGGGTTAGGAGACAGACTAGTGACA---AGTCTTTCTTCCATGGAGCCAGCCGCCTGTCTCCCTCTGGCTCCTCTGGGATGTGGTCTAAGGCCCCTGGTGGG-------AGGCTGGGAATCATGGGAACGGTGGTCTTACCTTAGCTCTTCTCCTGTTCTACACACACACTGGCAGCTTGGGACAGTGTCAGAGTAtccctgtgcctagaagctctgtcccccagaaatccaactggcaccatccccaccccccttcagatcctgtcacctcagtaaggcTAACTAGCAGAAAGTTCACTGAGGTTGGGCAGGATATGCTTTTGATGGTCCCTGTCTCTGATTTTGTCACTTCACTGAGGTGTGGACTGGCTCTCAGGGCCCCTCAAGCACCTGAGTTCTGAAATTCTGACCTCTGAGAG-GCAGAGACT-GTAGCTATC-AGAGACCCCTGTGAGCCTTACTGGCAGGGCTGGGGCCAGCTACCTACCCACTCTGTGCTCGGTGACAAGGGTCGCCACAGCCCAAGCAGAGTGGGTACTAGAGGGACTGCCGTATCATCTGATCCATAGCCGCTTAATCTCTTGACCATGTGCACTGGGGACATGTCCACCAAGGACGTCACTGAGGTGGGGGAAGAATGCAGCC-GTTGTCCGGGCCCAGAACACAAAGGCGGGTCTGTGCACACGTGGGCACTCCCGGCCCCGGCTGGATCAGCTGCTCTCGTTTCCTCCTTCGCCATCACAATACAACTACAGAGATACAGCCTGCCCTTCAACCCCCGCCCCAGGAGAACCAGGCAATGGGATTTCTGCCCACTGGGTGCCCGCTGAGCATAGCCAGCAACTCCAGCCTCCCAGCCCCCCCCCCCCCTTGGCTCCCGGTGAGTCTAGAATTTCCATTGCCTGCCTCTCCCTGACCTCATTTGCTGTGCCCTCTCGGCTTCCTTTTCTCTTGTCCTCCCAGGCACGCGTGTGAGGGGCAGATCCAGGGCGATCTGGACTCTGCTGATTACCAGGGAGCCAAGGCTGGAAGCTGAATTCTTATCTGCTGGGCGGTGGCCAGCTGTGGTGCAG---GGTTACACCAA-------------TGCTGGGGAGCAACAGCTGTCCCGGCCTACCATCGTCATCCTAGGACACTAGACAAGGGACATTCT---AGTCACCGTCCCTGCCATTGCCCAGCATGGGGACAAAGTGAGGCTG-----------CCTGAGATGTGGCGACAGGCACTCAGCATTCCATGCAGCAGCCGCAGTCCAGGCCAGGTCTTTTGGCCCTGTGTGTCTCAGTTTCCCGTTGATAGACATTCAGGAGAATGTTCTTATATAG------------AGGGCTGTTGAGAGCTGTCTGTGGACCTTGATGCCATCTTTAGCATGGC-TAATCCAGGGGTAAGCCCTGAAACAGTA------------------------------------ATACATGTACCAAGCATCAGC-ACCCAATGCTCTTCATTTGTTCATCAAGGACTGAGTACCTTTACTTGTCAGACATGTATGACTATGTCAGACTTCAGTATGCTTGATAAGTCAGTGAAGGAAAGGGACAAAAATCCCTCCAGCAGGAAGGTAGTctccctcctcccctccctcctcccctccctcctcccctccctcctcccctccctcctcccctccctcctcccctccctcctccctccttccctcctcccctccctcccccctccttccctcctcccctccctccttcctttcttcctccttcctcacttcctcctcctcttcctcttcctGTTTCTCCTTCTTTTCACAAGTTCTCACTTCTaaatggagag---aagtgaaaactgtgagtcctagtaaatgaaagtacagagaaggtattggggctcag--agctgggaaagagggctctggcatcaagagtcagggtaggc-----------cagggtc----taagccccagacagtctttggtgatgatgtaaaggtctaaaggaaatga-------aggagggcaccaagtgggtttctgggggaagaatcttctaggcagaagggatagctccttcc---tccctggggagcagcttacct-gtgtatctgtggagtcggggggggggggtcatttcactgcatagaatgcaggagaaagaactgaaagatcagga-------taagggcataaagggataacac--------gagacACTTGAAATACTATGTCATGTCTGCACTGAGCACCC---------------GACAGAGTGGCTTACATAACAGTG--CGTTGGGTGCCAGCAGCTAGGCTTCCTTCCCAAGTGTCAAGGTCCTTGGCTTCCCTATCAGGTTCTT---CTAATTATTCTtgtgtgtgtgtg-----------------------------tgtgtgt---gtgtgtgtgtgtgtgtatgtgtgtgtgtgGTATGGGTACCCTCCCTCTTCCCACCCTTCCTATCACCA--------TTAGATCTCAGCAATCTCTTATCATTTGCTTGCTGGCTTACCTGCAGCGTTCCTGGTGGGCCACTGTGAA-CTGGCAGCCCTGCCCCTTCCCGCACCAACAGAGAACCTGCTGACTTCCTTATCTCTATCCTCATACTTGACCCCAGAGGCCCTTTCCTGACT-GGGGCTTGTTCCTCCTCTCTCACTTGGCTCTGCCCTGAATTCAGCAAAAACCCAACCCACTC---CTCTTGATGGGTA--TGTAGAAGGTTCGTCCCTAAAAAC----CCAATTCTTGCAAAAAGCCAATAGCA----ACTCCCAGGGCTAGTGATGGTTCTCCTGTTTCCCGTCCTGCTATGTATCGTAATTATTTGGAAAAGTAACTTGACAGGGTGGGTAGTACACAAAGAGCTATAAGGTTACAGATATCCGTTGGTTTGGGAATTTCATGTTTCATGTTTCAGCTAAAGAAAATAAATCTGATTAGAGAAATACCCCACATAGGATTGCAGATGCTCAGTTGGTAGAGTGCTCCCAGCAAAGGAAGCCCCGAGGGGTCACCCGCCTCATTCAGGGATc--actcaggaggaagaggcaggatgatcaggaattcacaattattcttggctgcttatggagttagaggccagcctaagctacacgaaacTTagaaagagagagagagagagagacagacagacagagagacagagaagagaaagacaagagagTGGATATTTAGGAAAGAAAAAAAGTAAAAAGAAAGTGTGAATTTGTTCATGTAAATAAAAATGTGCATCTTAGAAACGTTTATAATATGGAACACAAATGGTAGCAATGACTG--TTTAAGTATTTGCTAAGAACCAGAAGAACTAGGCGTCATTACGTTTTTACAGTATTATTATTTTATCCAAACCCTCTCCCTGTCTCTTTAAGAAAGGAACAATGATTATCTAACA-GAGCTACAACTGCCATG-TATTCATGTGAGGATTCCCCA
s HiC_scaffold_1 111609959 3183 - 233722169 CATCCTATGGTGAGACCTTGAAGAGTTACTGGGGATCGATTGCCTTTCAAGATCTTGTGACCGACAGTTCTTGTGTGTGG---GAGAAGCAGGTCTTCCCACTCTGAG-AGC--ACAAACCTGGGAAGCC--------TGTCATTTTAAGTGTTCACGGGATGCTGTTTCCACATCTGAGGAAGGATGCACTT----AAGTAATAGATCCCCTAGTCCTCC--CAGTGTGGCTTAGTGTGACATCAAGTGACC---TCTTGGGAGCATCCTGTCCACTACATTCAGCTTGGGCAAGTAAAACCATTTGCTTTGGTAACTAGCCAGATGAAACTGGGA-ATGCACCAGTGAGAGTTAGTTGTACCTCCATGCAGA-----ATCCATCTCCC-CAGGTTTCTCTCAAGGGTGATCTAGATACTGTGTTGGGGCTGCTGAAACAGCCAGGCTTAGGGGCAG---------CTTAGCTCTCCCAC-------CAGAAAGGATACTGCCTTGGGA-----------------------TGGGATTGCTGGGCCCCCGGGAT------------AATTCTATCGCTATTCA-------TCACCTC---------------CAGAAAA-------------------ATGTG-------------------------------------TGAACTGT--ACTAACTCCCAGGGCCTGTCCTCCTCTTGTGATCTGAAATTCTCATATTTGAGATTGCGAAGGCTCACATCTGCCCAGGGATCCCTATACACCCCAGGAGCAGGGCTAGGGTCAGCCACC------CGCTTTGCTCAAAGATGAGAGGAGGCAAAAGCCAGGCAGAGTGGGTACCAGAGGGAATGCCATGTCATCTGATCCATAGCTGTTTCATCCTTTGACAATGTGCTCCGGGGACATGTCTGTGAAGGACATCACCGAGGTGGGGGAAGAATGTGGCCTGTTGTCTGGGCCCAGGACACAAAGGCTGATCTGTGCGCACGTGGGCACTCCCGACCCAGGCTGGATCAGCTGCTCTTGTTTCCTCCTTAGACATCACAATACAACTACAGAGTTACAGTCTGCCCTTCAACCCCCGCCCCAGAAGAACCGGGCAGTGGGATTGCTGCCCACTGGGTGCTCGCTGAGCACAGCCAGTAACAACGGCCTCTCGG--------CCCAGTTGGCTCCTGATAAGTCTAGAATTTCAATAGCCTGTCTGTCCCTGCCCTCATTTACTGCCCTCTCCcgtcttctctttctc-tgccctTTGAGGCACACGTGTAAGTGGCAAGCCCAGGGTGATCTGGTTCCTGCTGATCACCATGGAGCCAAGGCTGGA----------------------CAGTGGCCAGCCATGGATCAGTTTGCTCACTCCGAAAGCATTTTCCTCAGCAGTGGAACAAAAGCTGCCTTGGCCCACCACTTTTTTCCTAGGCAATTGTGCAAAAGACCCTCTACCAGATAGAGTCCCTGCCAATGCCCAGTA-GGTAGCCATGTGACACTGGGATGAGAGAATCTAGGATGTGACTATGGGCTCT-AACATTCCTGGTGACAGAGATAAGGTAAGCAAAGTCCTTAATTTCTACAT-TGTAGTTTGCTCACTGAT---TAT-----AAAATATGGCTATGTAGTTACTATCCCATAGGGCTAGTGAGGGCTTTCCATCAGCTTTCAAGTAGTGCATAGCATGAAGTGGACGTGTAGTAATCACCAACAGagcacaatacacacacacacacacacacacacacacacacacacacacaccatgcatcAGCAATACAGTATCAATCATTTGTGTGTCAATTACTGAGTGCCTTC----------CATGTGTCA-------------CACTGTACTAGGTAGGT--GACACTGACACTGACACAAATCAGT-GAGCAGAAACG--------------------------------------------------------------------------ACCCCACGTCTCTCACATT-----------------------------------------------------------------------------------------------------------ATGGGAGGTAACTTCTAATGGGGAAGACAAAGAAGAGACAGCATATCC-----AATGACGATAC----------TTCTGGATGAGCCAGCTGGTCAAGAAGAATCGGAAAGTTAGAGTGAGGGAAGGTTCTGTGTTCGACAAAGTCAGCAAAAGCCTTCTCAAGACTGTGATG-TCATGTGAAGACTTGGAGGAGGTGAGTGGGACAGGAGGGAGTCAGA------TCTAGGGGAAGAAGTTCCCAAGCAG-AGGGACAG--CCTGCCAAGTCCCAGGGTAGGGTTTTATCTGGTCAATCTGTGAGACAGGAGGAAGCCAGCTGT---GCTGAGACGAGTGAATAAGGAAGA---GAGTCATCAGGGATGCACTCAAGGACATGAAGGGG----ACGGGTTGTGGAGAGCTTTGTAATAGTTTGCCAggactgcccccccccccccaccctatACCCACAAACTGAGTGCCCTGTACAACAGAAATAATTTAGTTCTAGCTGGCAGAGGTCTTTATCAGGTATTGA-ATCCACGTCT--CCCAACAATTTCTTCTCCTGATTACTTTAAGGGAGGTGTGACCTAGGCACTCTCACATTTTCCCCCTCCTGTGCACAAAGTGCCAGGCCACTTGCCTGGGCTTCTG-----CGAGCTTTTTCTGCCTGCCTATCCTTCATTTCAGCACAGGCTATTCAGGCCACAGAGATTTTTTTGTCTTATC---CTGGCTTATATGCAG-ATTCCTAGTGAGTGAATGTGCATTTTACACCTCCCCCACTTCCTACCCTGA-----GACATGGGATTTTCTTTGTCCTT---------CCCAGCCTTACTGACGCTTTCCTGTCTCAGGGTTTGTTCTAACTGAGTTACTTGACCCTTCCTTGCACTTGGC-TATACCCACCCCACTCCTTCTCTGAATACGTATTTATAGAAAGATCACCTCTAAGAACCAGTCCAGTCATTGTAAAAA-CCAACAGGAAATTATTCTCAGAGTTCGTAattg---tcatgatttatgt---------tgTTATAATTACTTAGGAAAGTAACTTGGCAATTTGG-----------AAAAATCTAAGTGCATTTATACCTTTTAATTTGAGAATTTCATGTTTGAGAATATAGCTGAAGAAAATAAA-CTGAACAGAAAAATACCTCATATAA----ATGGAAACTTACATCATGGAA-ATTCATAATAAAGGA--CATGAAAATGATAGccatcagggccagggatttagctca-gaggcataagc-----------------------------gcctacctgggaagtgtgaggtca---tgagtt---tgatccctag---------------------------taccaaaaaataaaataaaataaaataaaa-----------taaaataaaataaaaataaaaacaaa-------------------------------------------------------gaaaagaaatgatagcaatgactaatatttattatttgttgtgTACCAGA---------CACCAATATGTTTCTCC---TTTATTGTTTTGTCT-AATCCTCATCACGTCTTTATGGAGTAGGAACA---ATTATCTGGTAGGAGCTACAATCAGCGTATTACTCATGT-AGTGTCCTCCA

a score=29339
s chr3           101557161 2186 + 160039680 caggatgattacaATGTAACCATCTGCATCATCTCCAGGGTTCCATGGAACACCTGCACATAGAGAACCTCTGAAG-TGCCTGCCAGTGATAGCCTG-GGCATTTTCCTTATTCATTGGGCATTGCTTCCCAGAACTCCACATGGCAAATTTGG---------------AACTCCA--GATGTGCTTGTACAGATAGTGTGCCTCTTTGCAGAACCCCCTCCCCCTTTAAAGCCTTTTCAGCCCATTCGTTTTTGTGGGGCT---GCTGTGTTTTCTGATCACATCTGCATTT--GAGTCTCCCTGTATCTTTCCTCAGGTCAGCTCCAACACTATTAAAGGGCAGCAGAACTGCCCACCA----CCCTGAGAGTAAGCTGACTCTCCCTC----AGTGCCG-AAGGACTGTGGAGGGAGTAAGGGAAGCCCAGAGAATCCTCATCTC-CTATGTTCTGTTCAGCTGAGCGCCCCCCACCCCCCGTGAGCTTTCTTCTTTAGATCTTCTTGCTTTTCTGCTCAACATAAAAACCTTCCAGTCCTTAAAAGCTATGTTGGTACGTTGCAGAGAGTAAA--GATGGATCTTTGAGCAGAGAACTGCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgACTTTCAAAGGTCGGCTGTCCTTTTGCCCAGAGTTCTGT-ATGGGC-AGTGGCCTTTTGTTTTCCAGAGGGACACATCTCCACCTTTGTAATGACAGGCATATGGAGTGGGAC--TCCAGGACCTTGGCTGGACACCAGGTGATAGCTAATTTTT-GTAGAAGGGAAGATGAAATAAGAAGTCCTTAGACTGCACTGTCTGTTTGTCTGCCAGTTCTCAAATAAAATTG----AATGAAGAATTCCTGCCTTATTTATGGGTTAGTGAAATCTTTCCTGTATTATAAAGAAATAGCTTCATCTATTAGATCTTCAGTGTCATCCCAGGATTGTTAACTATCTTCTGAGTGTTTATCTTCCGTTggggctgataggatgctgttcagtgggtaaaggtgcttgctgccaagccttttgacctgagttcaatctccaggccctacatgg--tagaaggagagactcgactcctgcT--CTGTTCGTTTCTTGTTACTTTATGTCTCTCCTTAGCTGCCATCTGATCCTTAGCTGGCATGCAGAGATGATAAGTGTATCCATTCTGTAAACTGAAGCTCT---GTTTATACTTGAAACTATGTATTCTATTTATGTTTACCTGATTAATGACTTACTCTGCAATGAAGACGGCCATTGCAGGACATAT---TCTGTGAAGTTTCTTGGATTCTTGTTTGCTTAAGAAAACAAATGAAGATCTTAATTCAAT-----TTTTATGCCAGAATGTAGACTTTGTAAGGCCCTATTACAATCCTCCCGTGTCCTGACCTTCTCTCAGGCTTGCTATTGGctgtctttccctctcactgtcactgtcccctccctcttgtttcctccattcctctctcttcctcctaccttctctcccttattctctcttgtctcttctcctatctgcaaacctctcttgctctctcccctctttcactttttAAAAAGAATTGGATGATGATTTAtttatttttagttt-----atgtgtatggtattttgcctgcctatatgtcttacaccatgtgtagcatgcagtgccccagaggccagaagaggatgtcatatcttctggaacagaaattacagacagttgtgagttaccatgtgggtgctaagaactgagtcagggtcttctacaagagcagccaatgctcttaacctctagggcatctgtccTTTCCCCACTATCGCCTCTTTGAACTAAGTTCTCCTTTGAAGTGTTCTATCCCATGTGGTATCTGAGCTCTGCTGCAGTCTCCAAGGTTGCTGATGAGTTAACTTACTTCTGATCCTTTCAAGTCACATTCCATATGTCTTCAAGTGTAAGACGTACATAATTGCAGGAGTCTACATGCCTTAGAGAGGACCGAGTGAAGATGCAGGATTGCAAGAGTGCAGAGGGTTTGTTAGGGCTTGATGTTAAGGACGTTTTCAGCATGACACACTGTGCATCTCAGAATC-ATGAACTGTATTTGAGTTTTGAAGGGAGTCTTCTTCAGGCAATGCTGCAGTGGCTCCCTTGGTAAAATGATACACATTTTGGTGGGGAGAAAGGATT-GAATGACAGGGGACTTTGGCTG
s HiC_scaffold_1 111618995 1835 - 233722169 CAGGAATGCTACACGATGCCAATCTGTATCCTCCCTAGTGTTCCATGT-------------------CCTCAGGAGATGTCTGC---TGAAATTATGCAGTATTTTCCTAATCGGGTCTGCTGTGTTCTCCAGAACTCAGCATGCAGGACTTCGCCATTAACTAGTCTTAACCTAATTAATCTGATTTCATAGCCAGTG--CCTGTTTGTAAGATTTCAACTCTCTTTA------------TCCATTCGAT-------AGCTCAGGTTGTATTGG-TGGTCACTCTTGTATCTCTGTTTCTTCCTGTGCTTTCCCTCAGATCAGACTGCCTATTGCTAAGAGGCAGCAG---TTTCCATCAAATGCCCTGGAAGCAGGTTTGTTTGGCCATTGGAAGTTCTGTAAGGCCTGGAGAAGGAGTTGTCAAAGCCGAGAGA-TCTTCAGTTCATTTTGCTCTGTTCAGCTAAGC---------CATTGGTGAGATTTCTTCTTTAGACCTTTACATTTGTCtgccaaatacaaaaatattccaaCCCTCTGCATCCCAGTTGGTGAACTTGAGAGAGTAACATGATGAATATTTTAGCAGAAAATTGTTTTTTCC-------------------------------------TCCGTGGGATTTGTAAGGATCTGTTGTCTTTTTGC--AGAATTTTATTATGCACTAGTGCTAATTTGTTTTCCAGAGAAGCACGTCTCCAAATTTATAATGAAAGGCAACCAAAGTGGGACATTTCATGGCCTTGGCTGGACACCAAGTGATAGCTGATTTTTTGTAGCAGGGAAGACAAAATAACAAGTCCTTGGACTgcagttttattttctccttctgttCCTGAACAAAATTGTTTGAGTAATAAACTTCTGTCTTAATGATTAGTTAATGAAAGCATGTCTGTATTTCataagcatatttttattttttaggcttTAAATGTCAACTCAGGATTGACAAATGTGTCTGGACTGTTGGCCTTTGATTGAAACTA----------------TGGATAAAT-TAATTAATAC--------TTCACTTAA----------------CCAAATGGACTGTAAGCACAGACAGAAATCCAGTTGACCAGCTGTTACTCATTAGT--------CACCTTAGCTGTCATTTCCTCTTTAATCAGCACCCAGAAATGGTAAGTACACCCATTTTGTAGAATGAAGGAGTAACATTAATggttgaaat-----------tttatatttacctAGTTAACTGATGACTCTGAAATAAGGaatatcactgtaatatataCTTATCTATGAAA----------TCTCATTTGCTTCCAAAAACAAATGAGGATcctaatttattatatattttatgctaG-ATATAG-CTTAGCATAGCCCTTGAAAACTTCTCCCATATCCT-CTTTTCTCTTGTGCTTGTTCCTGACTA--------------------------------CTTATATCCTTCAT------------------------------------------------------GTTGAAGG----------------------TACAATCTTCAACATGAA--GGCTGAGGGCTGA---------AGTTTGAAGGATGTGTGGAGACTCTACCTTGCACACA--------------------------------------------AAGATG-CACATCTAATG----------TACACAC---------------------------------------------CTATA----CACCCACTCCTGTCTACACACAAAG--------CCTTTCCTATTTTCCTTGCTCTTAACTAAATTCTATTctatgattttcctttctttgtggaCTCTGATTTCTACTTCAGCCTCTAATGATGCCAAAG-TTTCATTTATAGTTCATCCTCCCAAATCACATACCATATTTC--------TAAGATTTCAGTGATTGTA-----TTACATTCATT-TATGTCTCCAAAAAAGCAATTATAATTGCAAGAATCCAGAGATGTTGGTGGGGCCTAGttttaaagatg-tttaaataTAATACAATGTGAGCCTAAGaattaatgaaat-tatttgaattttgcaGGTAG-CTTCTGGAGGCATGGTTTTAGTGACTGCAGTGGGGGAGGGCCAGGTTTCTTGGTGGGTAGAGAAGCTTAGAGTCAGACGAGGTTTCTGTTG

a score=42465
s chr3           101562070 1236 + 160039680 ccctccccAACCCTTC-ATTCATTATATGTATGAAACAGATGCCGTTGTGTGCACAGAACTATGTTTGAGTTGTGTGCACAGAACTATGTTTGACTGGCTTTGGTAAGCGAATTCAAGGACAAGTCGCACACTACCCAAACCCTCCAAGCCAAAGCTGGGAGCACAAGAAGGCCTGGCCCTGCAGAGATATAGTACCCACGCCTGTGTCCTG-CCCCACAAGCGGCCCAGCCTAAAGAACACAC------------TGATTCTTG-----------TCTATGTTTTCCCCTTTCTGTGGCTCCAGATGTTGTATTTAACTTTA-AGAGG--TGAAACACTGCAGAATAAATGTGGCCATATGCCCAGGTGTGTGCATTTGTGCGAGTGCTtgtgcatgtgttcgagtgtgtatgtgtgtgtgtgcacatgtgaacatacacatgtgcacccatgtatttatgtgtaGAAGCC-GTCTCTCAATGCCAGCTAAAAATATCTATCAAGCACTTCCTCAGTGCTGGAAATTGAGGGCACCATATGTTTGCATTTCTAGGTCTTCCTAAGAATTATATAACGGCCCCCAA------AGCCAAGATCAGGGCCAGCCGTGGGACACATCTCTAATGAGAAATGCTGAGGAAGGCCTGACCTTGAAGAGAACTAAGCTTGCCAGCCCATGGAATGTTCCCAGCCTCGGGCTTTAAACAAGAACGGTATTCAGAGGTTGAACGCTCTGTTGAAAGCA------ATCTGTCCCCTTGCTTTGTCTTGGGGACTTATCAAGGTGAGCCCTGGCCCTCTGAGGCACTGGGTATCGAGTTTAGAGCTGGGCACTGCTGTCA------------GTAATCTTCCCAGCCATCTCTAATTAGCAGTCTCTGGGCCCcccagggtcacacagtccaggcagaagcgagataagcaagagttctagtctcctc-actcccagAATGGCACCCCAGAAAGGCATCCTGGGAGAAGAGAAGCAGAAAGGTTTTCTGGGAGGAGAGCCATGGGAGGCAACAAAGCCAGCACACAAAAGCTTATCACGGGCTCCCTCCCTCCGTGCAGGCCCTCCACAGAGGGAAGTATCTGATTGCTGCAGGCCCATTGTGGGCCTCTGCAGCTTTCTTCCCTAGAAAACACCCCTTGTCAGC-CTCCACTTCTGCT-CTCTCTTACTTGACTA-----------------AGGCCCCAGTACAGAGGTCTGGAACTTAAAGT-TTAAttttcaaacaatagctcatgaaccgctagtagcatatgtatttggtttag
s HiC_scaffold_1 111625575 1199 - 233722169 CCTTCCCTAACCTTTTTATTCATTACAAACGCATAGTAGATACAG------------------GCTGAAATTGTGTGCTCAGGA-TATGCTTGATAGGCTTTGGCTAGAGAATCCATCTGCAAGCCACTTACTGCCCAAACCCCTAGAGCCAAAGCCAGGGACACAGGGAACCCGG---TGGCAGTGGCACTGTGTCC-----CGGGTCCTGGCCTCTCCATCTGCCTGTTCTAATGAATGCACAACCCTTCCCCACAGTTACTGAGATAAAATGTTCTCTGCTTTCACCTTTGTGTGGCTTTAgatgttgtatttaattttttagaagCCTGAAGCACTTCTGCAGAGATGTGGTTATGAGTc--------------------agggctt---------------tgtgtgtgtgtgtctgtgtgtgtgtgagcatgcgcatg--catgtgtgtgtctgtgtgtgaaagCCAGTCTCTCAGCAATAGCTAAAAATGTG----AAGCAGCCAGTCTGTGTGGGGAATTGAGGGCACCATATGCTTACATTTCTAGGTCTTCCTAAGGGTTATATAACTGCCCCCAAGCTAGGGGGCAGGAGCGGGGCCAGCCGTGGGAGCCATTTCCAAAGAG-GATGCTGAGGAAGGACTGACCTTGAGGAG-ACAGAGTTTGCCAGGACATGGAATGTTCCCAGCTTGGGGC-TTAAACAAAAACCGCATTCAGAGGGCGAGAGCTGTGTGGAGAACAAACCCTATCTGTCTCCTTGCTTTGTCTTGGGGCCTTCTCAAGGTGAGCCCTTACCCAGTGAGAC-CTGGATATTGAATTTGGAGCTGGGCACAGCTGCCAGAGCAGGGCCTGGTAATCCTCCCAGCCATCTCTAATTAGCAAGCTTGGGG---CACAGTGTCCTGAGGGCCAAGCAGAGATGAGAT----AAGAGCTCTGGTCTCCACTCCTCACAGAATAGTGCTGCAGAAAGGCA---------------------------TGCTGGGAGGAGCGCCATGGAAGGGGACACTGCCAATCCACAGGCGTTTATCAGGAG----CTCACTCTGTGGTCACCCTTGGGGGATGGAGGTATCTGATTGGCCCAGGCTCACTGAGGAGCTCTGTAGCATTCTTGCCTAGAAAAC-CACCTCCCCACCACTCCACCCCTGCCGCTTTCTTACTTGACTAAAACCTGTTATTCCTTCAGGCCCCAGTCCAGAGGTCTGAGACACAAAGCAGTGTTCTTTAAACTGTGGGTTATGACCTATTCATGGTTTGTATACCTAATTTAG

a score=25805
s chr3           101571845 1765 + 160039680 TGCCGTAGGTTTTTAATGGAGCCATTATTCATACTATAAAAGGATTCCTCGCAT-ACTGAGCAGGCTCTTTAGACATTTCTGCTTTCCTACACACAGATTAACTGCACTGAGTCAGAGCCCCAG---TGTAGAAAGAGAAGGGAAGGGAGAGCAGAGGGGACAGGCCAGAGGGAGGA---------GGAAGGGACCTCTGTCTTTCAGAAAAGCTGGTCTGAAATCCACAGTGTTTAAAAAAACAACAAAACAAAACAAAAACCCACCATCACAAGCCTCGGCAAGGACAGAACAAAAATTGACTTCTAGGGACCAGTTTGCAATGCTGAAGCCCAGAAGCTATCCTCTGCAACCTGTAGGAGGAACCAGATCTGCCACCTTCTCTGGGAAAGCCTGTCCCA------------------GACTGACTGCCCTGGGGTCCAATGGGAGAGGCAGGCCGAGCTGCTCCG-ATCATAACTGCCTGCCTTCACGCTTCCCGGTTACACAAGTTGCAGCCTGGTTACT---CAGGCCCTGGGGGCAAATTCATGTGAATAACTGTTCAACAGGCTGTGCTCAGTTTCCAAGAAACTTGCTGTG--CTCCGGTCTTAATGCCAGCTCCAACCTCCCCTGTTCTT--TGTCCCTCATAAAAGCACTGCCCTTCTCTGGTCCTTGGCTTCAGCCCTGGCTCTCTACCA-CATGGTCAAAACTTTCCAAGC-ATCTCATATGCTAGAGACAAAGCATTAGCATCCCACGTGCCATGCCCGAGTGTCCTGGGTATGGGTTGGGAGGTGGATGTGTCACCTtctgtcacttgtcagtggcaaggcactgggcacgtcacctcacagctctgaacttcaCGTTGTTGTTTGTTTTGCTTA--GACCATTGCCCGGCTTGTGATAAATG-TGATTGGTAGGTATTGAGTTCCACTAAGTAGAAACAGCAAACTTTCCCTAGTTTTATATTCAGTGAAACGGGGCT--GGGGGAACTtttat--------------ctaactcttaggaaggcccaggcact-tgccaagccctctctgcaggtt-------atttgatctttgcagcaaccttgtgaggAG-----TGTGTAATGGCCTGTCAGGGAGAGAGGCTTGTAGAGCC----------CGTGAATTGCCTAGACGGAAAGCTGAGGAGCCAATACCTCGATGCCTACCCAGAGATGCCCCCACCTCCAGATGCA--------------CAGG-GGAGGGAACCTTT-------------------CCCATAGGGTGTGTGTGTCCAACAGGAGGCCCTGCCCCTG------TGAACATCACAGCATGCTGTGTGTACCCCTCAGGGGACTCAGAGTGGTTTGGGGGAAAGTGTGAGCCCTCTCCCGGATTTGCCCTTTGTTTTCCCTTCTGAGCTACATGGCACTCTGAGTAAGGT-CTCTGCCCTTCTCTTTGAGTGG--AGTTCTGGCCGCTGTATGACTCG-------TCCTTTGTGAGGCACTGAGCTGAGCA---GGGTTCACAGTGGAAGG---------------TGACTACATAACACATTGGGAACTGTGTATGAGGCACAAGT-----------------CAGCGATCTGACAGGCCATCCCATCCTCACTGGGGAGAGAG-------------------GGACTCTTATAAGATCCTGAGATACCCAGATCAACGAC---AATGCTTCGGAACCCAGGTCAGCCCGGGGTCCAGTGCCCTTACTGATGCCTCTGTACTTCTTAG--AGGAGCTTGACTTCTTCATGACTTTGACATGGTCCCCCACTCTAACTCTGTATCTAGTTCTAGACACCTGCTTGTTCTTCAACTCTCTGATTTCAAACTTCAGTGTTGAGATAGAGGGACCCTAAGTCACAGGCTGGTGGCAA-CCTGGGCACAGAT
s HiC_scaffold_1 111629822 1788 - 233722169 tgcCACCCGTTTTTAGTGGAGTAATTATTCATACTACAAAATTAATCCTCACATTACTGAACA----------ACAGTTCTGCTTCCCTAAGCACAAATGAACTATATGGAGTCAGAGCCTGAAACAcccaaaaagaagaggaaatggaaaggggagggaag----caaagggaagaaaagagtaaGGAAGGG------------CAGGGGAG---GGCAGGCATCGGC--TCTTTAAAGAAG----------------------------GCGTGTTT------GGGAAGGACAATGTTCAAACTCTCTGAGTCACTC----ATGCAGAAG-------ACTCCTTTCTGCAGCCCACAAGACTGA--GGACCTGGCATGTTCTGCGGGAAACCCTGTCCCAAGGCAGCCACAGCCTGGAGGCAGCCTGCCCATTAGCCcagtggcagaggcaggagagcctGCCCTGGATGAGAGCCACC-ACCTTCATGCTTCCCAGTTGCGCAAGTTGCGGCTTGATCACTGGGCAGCTCCTGGGGGCAAATTCATTTGAGTAACTGTTCAACAGCGTGTGTTTATTTTCCAAGAAAGTTTCCATGATCTTAAGTTTGAACACCAACTCTAA-CTTCCctgctctttctgtttctcataaAAACACTGCCTTTCTCTTGTTCTCGGGCTCCGTACCAGCTCTCTACTGCCACATCCAACACCTCTTCAGCAATGAGATGCGCCAGGTTCAGAGCTTTAGGATCCCAGACTCCAAATCCA---GCTCTG-----TGGCTACGAGGAAGACGTGCCTACCTCTGGCActtattagctgtgtgacttCAAGCAAGTTACTTCACTTCTCTGAGC------CTGTCCTCTCTCTTGTAAAGGGGTTATTACCCGGCCCATAATAATCACTGTACAGTAGGT----AGTTCCTTTATATG-----AGCAACTTTTCCCTCCATT------------AACGGGACTCCTGGAGCACTGTCACAGTGAAGATGTGTGCCAACCTTTTTGAAGAACTAGGCGCTATGCCAAG---TCTTTCCATATTTGgcttcatttaatcttcacagagGCCTCATAAAGTTGCCTCCATTTTatggac------agaaagaggtttggaGACTCAGGCAACTTGCTCCAACTGCCTGCCCAAGAAGAC-AGGAGTCAGGTC--CAGAGCCACAGCTGAGATGCTATTCTTCACATATGCAGTGAGAAACAAGGCCAGGAGGAGACAGCGCTTACAACCCCATCCGGGTCCCTCCAGTGAGTCTGGGAGTCCAGC---AGACACCACACCTAAGGGTCTGAACACCTGAA---GCTCAGGCTTCCATTGGGAGGATGCTGGTGAAGTCATGTGGGAATGCAAGACCTTGTGGAGAGCT-CACTTTGCTT------------TGCATGGTATTGAAGACAAGGTCCTTTGCCCTTTCCTTAGGGTAGGCAATGCTGACCACCGCATCAAGTGCAATGTTTTCTTTGTGAGGCGCTGACCTGAGTGCTTGggataaaacagaaaaggacagaaaggcttcctgacctcacagaactt-----acAGGTTGTCAGGGTAAAGTTGATGCTAAAAATTACACAACCAGTTGAAAA---ATATAGTCAGAACTGGGTACAGAGAGTACTCGATGCTGAGGAAGGTTTCTGGGGAGATCACTTGAGGTCTGGGGAAGGGACTGAAAAGCTCTGGAAGCCACGTAGGTCCGAAGATCACTGTCCTCCTTGGTGTCCCTGTA-----TAGACAGCATCTTCTTTACCCGGTAACTTTGATTTA---CCTTACTCTA---CTGCATCTAGGTCTATGTACA-ACTCATGCTTAAA--CTCTGATCTCAAACTTCAGTCTT--AATAGGAGAGCCCTAACTCACAGACTGGTGGCAAGTCTGGGCACAGAT

a score=139120
s chr3           101573925 10217 + 160039680 [encoded data, 11515 characters]
s HiC_scaffold_1 111632484  9886 - 233722169 [encoded data, 11515 characters]

a score=61085
s chr3           101584703 4436 + 160039680 [encoded data, 4887 characters]
s HiC_scaffold_1 111642393 4102 - 233722169 [encoded data, 4887 characters]

a score=299691
s chr3           101589722 16928 + 160039680 [encoded data, 19003 characters]
s HiC_scaffold_1 111646682 17083 - 233722169 [encoded data, 19003 characters]

a score=65923
s chr3           101610236 2833 + 160039680 TATCAACGGCCCTCTAGCCCTGTCAAATT--CAGAATCTGAAGACATCTGTCCCTCCC-TATAGCTTCCCGATGGCCTACTCATTTTATTT----------------AAA---AAGCACATACAAGATTTCTTAATTTCCAGCATGATCCTCATTCTCCACCACTTCCTCCCAACTGC-GTCTTCCAAATTGTTGAGGATGGGAGAGAAACGGACTGGGGTTGAAGCTTACGCTTCAC-AATCAGTTAACATACAACCCCCTAACCCAAAGATGGCTCAATTTTCTGGGAAGAC-AGGGCATTGTCTTTCTTCTGGTTTCCTGATCCGTGTTGTTAAATGAAACTCCCGGGTAGACCAGAGGCTTCTGTTGTTGTTGGCATTG---TCAGAAACCAGTGCTTAATGCAATTGCAGTGACTAAAGAAAATTTAAGCCACCTGGCAACCAATCTCACA-ATAAAGATTGGCATTATAGGGGATA--GAAAAAGGAAGAAGAGTCCAAATTAATGAATAATTTAGCTTCAATTGCCCAAAGAGCTCCAGTTGTATTTGTTCCTTGTGGCAATGAATCTTAGTGTTCTGCCTTCTTGAAAGGTTCCTGCCAACTTGACATTTGATATTTGCTTGCAGACATAGCAGTAGAGGTAGAggtggt-------ggagacagtgatggtggtgaga--taat--gatggtggtg----------atgact------ggtgaaagtgatggAggtgctggtggaggtggcagagatgcgg------------atgatggtggtcc-agatgtggctgatg--gtggtgatgctcacag------tggtagtggtgatTGAAACAGTAACTGTTTCAGAAGTGTAAGGAATTATCTCGATTCCAAACACCTACTCAGCCTGGGAGATGTAAGTGCCCAAGAAGGATGAAGA--TCCACAGATATTGATGTAAAAGAGGAGGGAGTACGAGCAGAATCCACTTCTACTCTCTCTCC-CTCCCTCTCTCCTGCTCTCATCCAACCAGCAACTTGGCTGCTGACACACAACCTGCCGGTCCCACCAAGTCAGGTGGCATGGGTCACCCCAGGCCCTGCCTGTCTGAATAA--TTGGTTATTACAGAACCT---GTTAAGAACCGGGGGGGGGGGGGGGAATAAGGCCACCAAAATGTCACAGCTGCCATCCAGACAAGACACCTTCAGAGTAAGAAGCCTGGAAACCCAGGGTCCTCACTGTAGGGGCTGATGCCGAACAGCCTTAGGGAGAAAAATATTGTCGAATTGTCTCCAAATGCAATTTATTTTCCTTTCT-CCTTTTCTTTCTCTCCCAGCTCCCCCCCCCCCCAAATCAGATGCCATCTGCTAATAAAATTGCTAATTAGCTGGGGAAAGCTATTCTATCCTCCTAAGAACAGACCCAAGAGGGAGCTGTGTTACAGGCAGGTCACTTCAGTTCCAGGAACCAGCAGCCACATCATGCCAGGCAGGCATCTTGCTTGGGGCTGGAGCTTCAGGGAGCCAGCACAGGCCAGGGACACACTTCCCTCCTATGGCTCTAATCTCATAAACCAGAAGTGCTCAAACTCAATATATTCTCTTCGCCCTCTCATTTTTCATAATGGAAAAAAAAAGGCGCAGTGAAAGTTTTGAATTAAGAAGCAGTTGCCATCTGGGTAATTGAATTCTGCTTGAAGCAGGCCACCTGGTTCACATCAGCTTCTCTTGGCAGGTATGGAGGGATCAGCACAAACTCTGC-TTGACTTCTAAACACAGGCTCGCTCACATTCCACGGGCAGTGGAGAGACCTTAATTTCTAAGCAGTGACAGCCGCCTTATATCATGTTACCTCGATGCACGGGAGAGTTCCCTGGATGCAGACAGATGAGAATTATAGCACAAATAGTTGGACTTGTTGGTTCCTGGTCACACGCTCCCTTTATAAACCCAAAACTGAACCGCCAGTTCCCTTTGGCTTCCTGTTTGGACATCCATGTCAAAGACACACAAGTGGCTTAAATCACCTTGCTCTCCTTGAAGAGTCAAGGAGTTGAG----------------ACTAGTGGAGGAAGAGTGGGTAGCCCTGGAGGAGGGTC--AGCCTCCCCTACCCTGCTGCCTCCTACGGAGCTGCCCAACCCT----------------GTTATGCTTCTGTAGCCTGCACAGCATGAGGGAGTTGCAGGCCAGACTCTCCCTCCCACCTCAGAACCACAGACTCAGAGAACACAGGAATCAGAGCGCTAACTGTGTGGCTTCCCAGCCAGGGCTGTCCAGGCCAAGAATGTCTTGTATTTACGTGGAGTGACCTTGCTGATGTCAAGAGGAAGGGTTAGCAAGGACAAGA-AGAGCAAGGAGCAGAGCTGCTGGGAACTCGGATGGCCACGAGCAAGACCTTGTGTTTC--------------------------------------------------------------------------------------------------------------------------------------------AGCCTGTTTCTTCTGTTCCTGCAGTGTTTGTAGCAGAGCAGGGGACAGCCCGGTGGCTTGTGCACACAACCTGTGGTTTTT-AGTTGGGA---GAGCCTCTGCACTGGACGAAGCTCTTCCCACAGGGAGTGAGAAGTTTTACAAAGGA------GTTTATGGAGTAAGAGTCTTACAGCAGGAACAACC-AGCCCTGCCTCCTCCTACCGGATGGGAT-----AAGGCTGAGGGGCTACAAGGGTTTCCCTGCTGTCTTCACAGAGCTGATGCAAAG---------ATTCCCAACCCGTTCTCTTTCCAGCCACCATGTGGCTTCCTCCTCAGTAGGGCAACTAGAAAAGAATCAGCTTTGGGGACAGAAATGTTTTGc----aaaacaaaacaaaacaaaacaaCTCCAGAAGGTTATCTAAAACATGCAATTAAAAAAAAAAAAACAAAACAAAAACAAAACCCAGAT-CTTTAAAATGGAATTTTCCATGATGACCTGGTATTCATACA-GTGCATCTTGAAAGCCTC---------ATTTCTCTAGAGAGA
s HiC_scaffold_1 111664135 2947 - 233722169 TATTTACAAACCTCAAGACTGATCATATTATTGAATTCCTAAGAAATCTTTTTTCCTCACATGTCTTTGTGATagctttctcattttattttctttttatgtgtgtgACATTTATGCACATGTAGCATA---------CCATTGTCATCCCCATTACCCACCACTTTGCCCTAAACACAGGCTTCCAAATAGCTAGATATAAT-GAAAAATGg----gaattaaaacatcattttaacTCGTAAGTCAACATACAATTCCCTAACCCCAAAAGAGTTCAAATTGCTGGGAAGACTCAGGCATT----TGTATCTGATTTTCGAGTACAT-TTCTTAAACAAAACTCCAAAA-AGACCAAGGACCACT----TTGCCTCCACTTACTTCAGAGACTAGCACTAAATACAATTCCACAGACTAAAGAAATTTTAAGCTACCTGGCAACCAATCTCACATATAAAGATTGCAATTTTAGAGGAtaatgagaaaggagaaaagggccAAATTAAGGAGTAGTGTAGTGTCAGTTGTCTA----GCTCAAGTTGAAAGTGTCCCCTGTGCCACCAGATCTCAG-ATTTTGGCTTTTTGACAAGTCCCTTCCAATTTATCACGCGAT--------GTGGACATTCTCATAGAAGTTGTGATGGTAGCAGGAGGTGATGGTTCTGGTGGCGAAAGTTCATCAAATAGCAGTATCCCAACTAAATGCTTTCTTCAAACAAAAGCATTATCTTTACAGTTATGTATAAAAACTATATAGTTTAGTACCTACATCATGATACTCTGAGGATCAATTGATGcagtacatatatacacaaaacatAGAACATTACCTATTGTG-TAGTAACTGCTCAAAAAATGTAGGACATTGTCTCAATTTTAAATTCCTACTCAACCTTGGGGACACAGAGGCCAAAGAAGGATGAAGGCGTCCACAAAAATTGATCTATGGAAAGAGAAGTTGAAAACAAGAGTCTGTTTTGCTGGCCATCCTCTTCCCCCATCAATCTTATATCCATTGCAGAACCTGTCCCCTGAAACCCAACCACATGGGGGCACTGAGCTGGGTGGTCGAGGCCAGTGATCATTCCACCTGTCCAAACTAGTCTGGTTGTTACCAAACCCCAGGTTAAAACC-----------AGAGAAATAAGCCCACTAAAACATTATAGCTGTAGCCCCACTGAGAGGTTTTCAT---------CTTCAGAATTCAGCATCTGCACTGCAGGGGCTGATGCTAA----CCTCAGGAAAAAGCA------AGCATTGTCTCCAAGTGCaattaaaaacctttaaaaccttttctcattttccctttttacttaaaaggaaaaaaaattaccatcTGTTAATGCAATTGTTAATTAGTAAAGGAGAGTTAGTTTAGCTTCCTAAGAACAGACCCAAGAAGAGGCTGGGTTTCAGGCCCATCACTTCTGTTCCAGGAGTAAGCAGCCA-----TGCCAGGCGGGCATTGTGGTGTGGGCTGGAGCTGCAGTAAGCTGGCAGAGGTCAGAGACACACTTCCCTCCCATGGCTCTAATCTCATAAACCAGAAGTGTTCAAACTCAGTGTGTTCTCTTGCCCTTCTCATTTTtcataatggaaaaaaaaa-gcactggTAAAGTTTTGAATTAAGAAACAGTTGCCATCTGGGTAATTGAATTCAGCTTGAAGCAGGCCACCTGGTTCACATCAGAGGCTCTCGGCAAGTATGGAAGTGTCAGCTCAGGCCCTGCATTGACTGCTAAATATAGGCTAG----CATTCCACGAGCAGCAGAGAAACTTTAACTTCAGAATAGTGAAAACCATTTTGTATCAGGTTACCTCAATGTATGCTAGATTTCTTAGGCGGCAGAT-TTTGAGAATTACAGCAGGAACAGTTGTTCTTGTCCATTCCCAGCCACATACTGCcttgaaaaaacaaaatctaaaaagcCAGTTCCCTTTGGCTTCCTGTTTGGACATTCATGTCACAGAAATATGCATGACTTAAATCACCTTGCTCTCCTAAAGGGTTTAGGAGGCTGAGTATTTCCAGCCTCTACAATATTGAAG--AGGGGGAGAAGTTTGGAAGCCAAGTCTAACCCTAGCCTTCTCTGCTACTTTTGAC---GCTGCCAGTCACTTTGTCCCCCAAAAGGAGGCACACTCATACAGCATAAACCGAGTACAGGGGTTGCAGTCTTG------TCCCCCACTTCAGACTCCAGTATATCAAGAGATTAGGAGTCAG-GAGCTTTACATGCAACTCACCAGCCAAGGCTGTTGGGGCCAAG---------------TGCAGAG---------TGATGTCAAGAAG------CATTGAGGACAAGACATAGTAAGAG--ATAGCAGCTCTGAACTTAAGTGGTTTTGAGCAAGTCCTCATGCTTCTCTGAATcaatcagattttctttttctttctttctttctttctttctttctttctttctttctctctctctctctctttctttctttctttctttctttctttctttctttctttctgtgcctcTGAAGTGAGCATTCTGAGCACATTTCTTACATACCTGAAATGTCTACAACAGAACC----ACTGAGTGTAGATGTGAGCCTTCA---TTTGATTTCTGAATTGGGAAGGGGAGCTATGGATTGGGTAGAACTCTTGCTCCAAAGCAATTTGGGTTTTA-AGAGAACACTAGGCTTGTGGACTGAATATTCTACACCAGAAATAACCTGGCCCAACCTCCTGTTACAGGATGGAATTGATGGAGGGTGAAGTAC--------TTTCCCCAAGG---TAGCTGAGCTGCTGCTTAGGGGACTGCAATACCCAGTCCCTTCCTTTCCGATGCAGC-TGTATCTTGTGCTT---TAGGACCACTGAAAAAG--TCAGCTTTGAAATCAGAAATGTTTTACTTCTAACACACGCCA----AAAAC-------GAGGGTTATCAAAAACAGGTCATTTAGAGGA-----------------------Ctagttcctttaaaataaaattttcca--------ggGTATGCATAGATGTCCACTTTAAATatctcatttcatttatttctcaagaGAGA

a score=47932
s chr3           101613806 3598 + 160039680 TCAGGAAGAGTCCTCCCTGCTTCCTTCCTTGGAAGATGCTCCTCACTGCAAGCACAGAACCCTGGGCCCTACCTCACACCTTCAGGGCGCTGCCCCACACTGCTGGGTGCCTTTG-----CTCCCTTCTGTTTCAGAGGCTTCTTTT-------CTCTTGA----AGAAGGCGCCAACAGGAGCCTCTGAGGAGGGTGTGGTGGACAGTGGCTGGGGTGAGA--GGGATGGGGGATATGCTTGACACATACATACTGGAGCTTGGAACAGAGAAGTTAGAGTTAGCTGAGGAGCCTTGTCTGGTCAGTACTGACTCCCAGCTGGCCACTCTCTGATGCCCTGGAAGTGTTG-GATCTCCCTTCTTAATCTAACAAAGTGTGTGTGTGTGTGGGGGGGCAGGCGGGGAGAACTTGCTTAAATTTAGAAAGCTGTCTTAATATTCTTTCATCCATAGTATCTTGCCCTCAAGCGTTGAAGTCCTCAAATTTACTTTGCAGAATGAGTTTTGTCCAACCAGGTTTTTTTGCATGCGTCAAAAGcggtggttctcaaccttcctaacagtttctcatgtggtggggacccccaaccgtagaatatttcattgctacttcataactgtaatttttgctactcttatgaattgtagtgtaaatatctgatatgcagtatgtctgttatgggatccccagaggggtcacggcccacgagttgagaactgctgATCTAGTCACTCACATTTTAAGCCTGGGAGAGATTGCTGTCTCTGTATGCTCCTTTCTCTTGCCAAGTGGACAGT--CTCAAATCTCCTTGTTCCTGCGCTGCAGCTTCCATTATCCTTGCCTCTCTCTCTGTT----------------------TATGCAGAATGACCTCGTCTCTGGTCTGGAACCAGCTAGAATTTCTTCTTTCCCACACTGGGATCCATGCATGGTGCCCAGGAAATCAAATCCTT-TACTTTGGAATATAGGAGTTCTGGGGGAGATACTGAGTTTAGATCCAATTACAGGATGCGGTT-CAAGGATGCTGGAGGGACCTGTTGATCCCAGGATCCCAAACAGAAGAACTGCTTTCTTAGCAACGTAACTGTTCTATTTCAACATCAGTATCAG------CTTTGGTGTTCTTATTTGCTATTTAAAGGCTGTTTTTCTCACAGCATCCCACCAATAATAAAAAATTGGGTTATTGTATGAGACTCACACTATGACTGTGTCAGAGGGCTAT--CCCAGAGCCTCTGTGAACATCAAGAAAACAAATTTCTCTCAGGAACTTCTTTTGGGGGTCATTGAGACATTGGGGAAATATAAAATACCCAACAATACTTGCTTCTCACCGCAATACATTTCTGGAAGCCACATGGAAAATCCTAAAACTGATCTTCCCTGTGGGATCTGTGTTATAATTGGATGCTGCATTCTTGACCAAAGACTTGGCATCAGATAAATCACTGATACTAAATATGTCACAGAGGCAAAGATTCACAGTTTAAATcggtagttctcaaactcaactgagcatcaaaattgtcaaaggagattgagtaaaaaatgctgatgcctagg-ttccatctggaaccagctgaagctagatttccatgggtggggccaggtaaccattttttttCCTTTGTCTCTTTAAGGATTGCATCTTTATTTATCAAGGACCAAGAACAAATAAAGGGAAAGATGTCA---AGATGTCACTGGCACTTA--AAGTATTAGAAGAGCTACATGGAAAAAGTGACAAGAGAGGAGGGAACTGATGTCATCATATTTACTGTTTAAAAACTGCAACAAATAAAAACCATTTAGATGAGAAAATAAAGAAAGGGACAATTTTGATTCTCTAAGGAGAAAGTCAGACCCCACCCCATTTGATGAACAGTGAATTATTGCTTTCTGTATCCAT--------------GGATCTAGGCTAAACTCGTTAGGGTACCTATTCCCAAAGTCA-----TTGTGTGTCCATGAGAAGTCCCGGG-------TAGATAAGTCTAGGGTTTGTCTAGGAGTCTTTGGAAAAGAATAGGCACAGACCCTGTTCTCAAGGAGTCTCAAGAAGAAAGGAGC---------------TTACACATCTAGTAATCTGGAAGCGTGGGAATTCTACT-TGTGCCACAATAGCAATTGGATCTGAAATTGTCCCAGCCAGACAAACC------GTTGAAAGC--TGGCAAC---------CATCTCAGGGCTCTTCCCTTCCCCTGGCTAAAGCTTAGAAGGTGTCACAAGCAAGTCCAGTCTCTGCCTCCCTGGAG-GTACAGTCAGGGCAGAGAGGAAGTCCT--------TCTAGAGGTTGAGTGTCCACCCAGGCCTTTCCTGCC-----------------AGTGCACGG--------------GCACA----------------GTTTCCCTTTCAGATTCCAGCTCTTGAA--ATGAACTCTGC--CCACAGGCAGAGCGTTCTTACAATGCCCCCAACGCCTCAGTATTTCCCTCTTTAAACAGAAGGAAAAAACCGATCCCCCATCTACCTCAAAAGATATGTTAAACACATTTTCCCC----CCACAAAACCATCTCAGCATTTTTATTAACATTTTTGAACTTTAAGGGTGATGTTTAGTGACCAGAATTCAGAAATGGTGGAGGAGCTGTTACAAAAGAGAAGAAGAAAT-------ATTCACCCGTAATT-----ATACCCAGAAGCCCATAATC---ATTTTAAATATAATGAAATAC-AATGAAAACCATTCCCTATCTTTAGTTTCCAG----GCTTTTAAAAATAGAAGACCTTAATAGTGAACATTTCTGAATGTCATAATAAAATTTGGCTTAAGACATAAATACAGACTTGTGGGCCCAGACTATTCAATTTTTTGACAACATCATAGTTTATATATTTGTAACAAGAGATATGATATGAATTTTTAAAAATGCGGGTGAGGAAATAATATACTTTTTAAAAAAAAAAACTTACTttttattttattttactttatttttttatttttttggttttttgagccagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggatggcctcaaactcagaaatcctcctgcctctgcctcctgagtgttgggattaaaggcgtgtgccaccatgcccagctAAAACTTACTTTTATTTATGATAATATCATTGGAGTttttgtctctttgggaaggggttgagaaaagatctctttatagcccacactggcctcaggacttgtgggaaatctacctcagcttgctgaatcctgggattgttgggtgagccaccaaatttagctGCAGGTTGTTGTTGTTTTGTTTTGTTTTTATGCAAACAACAGTTGGAAACAAAGTCAGAAACACAGAAAATGAAATTAAAAAAGAAA--AAGACTGAGGCAGTTT--CTTTTTAAAGGTCAGTTTGTTCCCTTCCAGTGAAACAGAGAACATGCAGTAATTGCTGTAACTACATTCCCATTGACTTCTTAGTGGAGAGTTTTAACTTTAACACCCCCTACTGGTTTGCCTGATGATTTTAGGGTTATTGGTTTTTGTTTGTTTTTTTTCTTTCTTTCTTAAAATTCTTTTCAAAAAAATTTTCTTAGTTGTCTGCCACCTTTGTACTTC--TTGGCTTCTTAGTTCTCCCTGaaaaaaaaaaacaaacaagcaaacaaacaaaAACCAAAAAAAAaccccttagaacctaatttaa
s HiC_scaffold_1 111667175 2965 - 233722169 TCAGGGTGAGTTC-CCCGGATTCTTTCATATGAAGACTCTTCTCCCTCCACGAATAG--CCCTGGGTGCCATATCACACCTGCATGGAGACTCGTCAGATTATTGGGTAACACTATTGGACTCCACTCCGTGACCATAGTGTCCGCAGCAGGAACTCTGGAGAACAGGAGGAGCCAGCAGGAGACTCC----------TGAAGGGCAGTACCTTGAACAAGACCTGGATGTAGGGTTAGC---------AGATTCTAGAGA--GAGAGTGTGGAATCAGAGGTAGCTAAAGAACCTCGCGTTACCAATATCTACTCCCAGCAGGC---TCTGTTATGCTTCTTCATCCTCACGATCTCTTTTCTTAATTCAATAAAGGGCAT-----------------------------TTGCTCCAATTTGAAAAGATGGCACAGTATTATTTCATCCACAATATCCTGTCCTCAAGCATTTAGGTTCATGAATTTCCTTCTCAAAACTAATTTCAGTCTAATAGGACTTTTT------------------------------------CAATTT------TGGTG--------------TAGAAT---------------------------------------------------------------------------------------------------------------------------------------CACACATTCTAATCCTCTGAATG-TTATCCTCTCtttactctcttctttcttcttaaatGGGTAGTGTCTTAACTGTCCCTGTTCCT-----------TCTCCCACTCTTGTTTCTCTGTCTGCCACCACAGCCTTGTCATGGCCCCCATTCAGAATAGTCTATTCTCAGATCAGAG--------GGGACTCTGTCTTCCCACATTGGGATTCATGCTTAGTATGCAGAAAATCAGGTCCTCATGCTTTGGAATAGGG------TGGGGGGAGTTCTGAGTCTAGGCCCAGATGCTGGAGAGGAATATGGAGAAGCTGGACAGAACTGTAAGTCCCAAGA--CCAGAGACAAGGGTTATTGTCTCAGCAGTACAACTTCTCTCTTTCAGTATGAGTATCAGAGATTCCTTTAGTAACTtcattcaacttttaaaaaatgttcttctTACCATAGTCCGCTGATGACAAAAGAttga---attttgtgatttttttccta---------------gctGTTGCCCACAGCCTATATGAGTATCATAAAA-----------TCAGG---TTCCTTTTGGAGGGACTAGGGCATTAGAAAAACATAAAGTACCCAACAATGCTTGAGTCTCACTGTAGTACATTTATGGAAACCACATGGAAAATCCTAAAATTGATCTTACCCGTGGGATCTGTGTTATAATTGGATATTGCATTCTTGACCAAAGACTTGGCATCAGATAAATCACAGATACTAAATATGTCATAGAGGCAAAGATTCACAGTTTAAATCAGTAGTTCTCAAGTTTCACTGAACGTTAGAATTGTCAAAAGAGATTT-TTGAAAAGTACTG-TGTCTGGGACTCCACTTGGCGCCAGTTAAAGCCAAAACTCTACTAGTGGG---------CCAGTTT---------------------------TCTTTGTTTATCAAGGGC------------AAGAAATAGTTGTCATTTAGTTGTTGTCAATAGTTATCAAAAACTAAGGGGCCCACTTG---AAAGT--------------------ACATTGCAACATTTTTTGATT-----CTTC--CAAATGGAA---ATTTAGA---------------------------GACCCTCCACTTAATAAGTCA---TCCACCT---------GGCACTAAGATACTGCTTTTTGCATACGCTGTCTACCAAGTCAGAATTTGACCTAGTGTCCTTAGGGTACAATGTCCAAAGGTAAATGATTTGTGAGTTAATCAGTATTTATGAGGCTTCCACAAATACAATAAATTCTTGTTGAGGTGTCTTTGGAAAAGAACAGATACAGTTTTTGTTCTCAAAAAGTATTGAGGAGAGAAGGGCATGGTGATTCTGACGTTAGGTTTCTCCCAATTTAGAGACACAGAAATGTTGCCATTTGCAATAATAGCACATGTGCCTGAAATGATCTCAACTATGTAGATccaattatttgaaaattgtggTAACTCTTAGACATATGTCAGCAGTCTTCCCTTTCTTTGACAAAAGGTTTGAAAATTGGCCTGGGAAGAGGAA-CTCAGGCTCCTTGGGGTAAAtggtaaaaagagaaaagcaggcaTCAGTGGACCCAAGAAG----GGATCAGCTTCGTGCATTTCTGCCTAGATACTGTACAAGTAAGTGGATGGGATAACGAGGTTAAGCATACAAAGCCAACAGAGTGgtttttctttcagattccagTTCTTTGACCATGAACTATGTGACTATAGACAGGGCATTTT----ATG------ATACTTCggtaattcctttttaaaatggaaagctaATGTGAATTTCCTACCTATTGCAAAAGACATCTTAAAGATAAATTACTTTATACTGAAAAGATATTTGAGCATTTTGTAAATTCTTTCTGA--TTTAAGAGTGACA--TATTGATTA-AATCACAAATTTACAGAGAAATTGTTACAACacctaagaaaaaataaaactcatgaatgtgtgattgtgaaacaCTCTTAATACTGTGgtcattattttaaacataatgaaacacaaaagaaGAATATGCTCTATATGTagtttttaatcttgtttttctaTGTATA-------TATAATGAGCCTTCCTGCATATCTTAA-AACATC---CTTAA-----AAACACAT-TTTGCAACTGTataatattcaa-tttttaaaagtattgtgatttgtttattcatcatgtggtatacaatataaatatttaa------------------aatata-----tggaaaaaa------------------------------------------------------------------------------------------------ttcaTAACCCA----------------ACAAATTTTCCTTCTATTAC----------------------------------------------------------TTTCTAACAGTAtatttggagatttt------------------------------------taaaatatacagacaTCA------GTAGGAAA-------------------------------------------------------------------------------------------------------CAATTTCAGAAGCAcataaaatgagatttaaaaaacaatcaaga-----gcaattttatttttaaaaggtcaattcggt---tacaaaggaaagaaagaacatgcAACAATTGCCATAACTTCATTTCCATTGACTTTTGAGTGG-TAATTTTATCTTTAACACCCCCTACTGGTTTGCCTTATGGTTTTAGtgttatca--------------ttttcttcttttttttaaaatgt----------gatttcatTAGAAGTCTTTTACCTCTCCAATTCTATTGTCTTTTT--TCTGTcctggaaaaataaagcaaa-aggatcaggaacaaagaaaaaaaaaacaatacttaTTACTTCatataa

a score=44098
s chr3           101618495 1829 + 160039680 aggacgcctgcaccgtggtcagggagggcagcttttgaggaggtattcaa-cattgtccctgagg---------------------cctgTGCTTTGAATCTTCTTGGCCCATTTC----------TCTCCTGACTTGATCTTAGTGCCGTTCCTCTGCCATTTCAGCTGTGAGACCCCAGGAAGGCTTCTCAGAGACTCCCACAGCAAGCCATATG------------CTCTCTGACTACTT--------ATAAAC--------------------CCAC-ACTCTCTAACG------------GTCCT-----------------TCATTCTGGCACCTTCATTACAGACAG--TAGGATAAAGTTGGCACTGAGAGTGATTCCTACTTTCCTGAGCCAcagtaatc--tcctc---------ttcattttctaagatttcagttatgtg----tggtcaatcatcagggggaaatacccaacggaaaattctagaaatgagcaatttattaat-ttaaataactttatcataatatattgctttatggttctattttgttatcagttgtt---ggtaatcttttactatgtgtgctttat----aaattactgttcttcattaatacttgtttgtaggaggaaagagtgtatataggatttgatgctgtctgggtttcaagcatccacttggagtgggggtccttagaaaggattctc--ttggata---agaggggCATGTAT-CTTTTAATATGCATAAGGTTTACATTTCAGTACAGCTAACTTCATTTTACTATTTGGGATTCTGCTGAAATTATCTCTTTGCAGAGGAAGAG-TATCTCACCACCCACATCAGCTTCCTCCTTCACCC---AGAACAGAGTCCCCGAAAATAAAGTTCCTTAGACTGTTCTACCAAGTTCAGAGACAGAGATGAG--------------AACTTTGCTCTTTAGTCGTGATTCATGAATGCAGGTGTTATCTGTAGACACCATTATCAATTGTCTTTGCGATCCATGGCTAGAGTAAGCGTAGTCACAATTTCTAATCATTAGAGATAGTTTG----GAAGTTTTCAATTCATCTTTTTACTGTAGCTAATTTGGGTATCCGTTACCTTCAGATCCAAATAGCCATGACTGGTTCTCCTTGCCAAGACCTATGTCAGACATAT-------CTCCTTAGGATTTTGTGATGGCtta-ttactctatgttagggataaagacagtgaggttcaggtggattaggggcaagctcaaagtcaaaggaagagggagaaacccatgcaagtcttctgactctaGT---AGACGGCCTTGCAGGCTGGAGCTCTCTGCCTTTC----TTTTTACACATGGCTTTGACTCACATCTTGAGGAAACTGAGGTGGAATGTAACGTGCAGGTATTCATCTTTGTAAAGC--TTTGTTTCATTGGGAGCACTGGTCATAGATGAAGCTT----------ACAGTGGATATGTTCGTG--GCATACGTTAAATATGATTACAGACAAGGGGGTGTATCGCTCACAGCTTCAGTTTTCTTACCTCTAATCCAACTCTGAAGAGGACACAGGAGCTCAAATAGAGCATATGGCATTCATAAAGTTACATATGTGCAATCATACATGGTAGTTTTATTGTatataaaagacattatttataatggcaacaagtgtc--aaatttttagcattatactaataaa----acacaggac----------------tgtagctccatt-atttattaaaggaaagaaaagatgatctacacaagtgattgggggaagtacagtattactctggtggcatttgtccctagattgctttatagatttcatattacaattcagatcaaaatcatggcaggaatttgtgggattgtgataaactcattttaagttttctatgaaagcaataaagacttttgagtaatcaactctgaaagagaacatt--aggaatgggaggaGTTAACTAGTGAATGAGTCATTTGAGAAGGAG
s HiC_scaffold_1 111670851 1864 - 233722169 AGGACGACTG-----------GGGAAGACTGCTTT-GAGGAGATGTCCAGTCACTGATCTTCCGGTTTCAACATGAGTGCTACATACTTGTTCTTGGGATCTTCTCTGGCCTTTTCCTTCTCTGGATCTCACAGCTTAGCCCCACAGTCTTCCCTCTGTC-TTTCAGTTGTGAAACCCAGAGAAGGGTTTGCAGGGACTCCTATAGCAGGCGTTAGGGCAGTGATGTGAACCTttgagagctttcagtgatacaaacaaccAGCTGAGCCATGTGTGCCACTGCTCGCCACCGCCACCTTAGGGCATCCCACCTCATAAATTCATACTCACTCTGTCATCCTCTTGCATGCCAGCATAAGATGAAGTTGGAAATAAGGGACATTTCTATTTGTTTCAACTGCAGTAGTTCATCCTTATCTGAGATTTCACTTTCTAAGACTTCAGTTATGTGGCTCTGATCAATTgcaatgtgaaaatattaaatggaaaattccagaaattaaaaagtcataaaTGTTAAATAACTTT-TCTTACTATATAtcataattgttttatttcattgttagttatttttattaatcttatactatggctactgtatttttaaattgaatgttatcacagatatttacatagagg-gaaaaaagtatatataagaCTTGGTACTATTGAGGTTCAAAGCATACACTAAGGGT-------CTTAGAAACATATctcctttggatatatatatatatatatatacttttaatatgcatgaaatttgcattttaatatagCTAACTGGATTGTACTATTTGAGATTCTGCTGAAATTATCTCTTTGCAGAGGAAGAGTTATCTCACCACCCACAGAAGCTTCCTCCTTTACTCAAAAGAACAGATTCTGGGAGAA-GATGTTTCTGGGACTGCTCTGGGAAGTCCAGGGCCAGTGATGGTCTTCACAGTCCGGCAGCCTGTCCTCTCAGCCATGACTAATGAAGGTACGTGTTATTTA-AGACACAGTTGTCAATTGTCTTTGACATCCTTTGCTGGGATAGGTTCAGTCATAATTTTTAATCACTGGGAGTAGTTGGTTGTAGAATTTATGATTC-----TTTTCTATCATTATTCT------------TCTTTAGATTCAAATAGCAGGTATTGGTTCCACATGCCAAATTCTGTGAAAGACAAATCTATTTCCTCATTGAATTTTTGTGACAACCTCTTTAGTCTGTGTTACAAATGA--------------------------------TTCAAAGTCAGAGGTAGAGGAAGGCATACACTCAAGTCCCCTGATTCCAGTTCAACAGGGGCCCTCTGATTGTAGCTCTCT--CTTTCTGTATGTGTGCACACAGCGTTGAACAATATCATGTGAAAAGTAATGTAAAATGTAATGTGCAGGTAGCA--CTCAGCAAAGCAAGTAGTCTCCCTGGGGCCACTGGTCACAAATGAACCATAAGAATAAAGACATTGAATGCGTGCATGATGTAGATATTAAATATGTGTTCGGACAAGAGGGTGAATCTCTCAGATTTTTGG-CTTCTTCTCTTTA---------TGAAAAGGCCATGGGACCACAAA---------------TCAAAAAAATATac--------tcat---------tttctttatatat------ctttatatataatttacatgAACGACCTAAGTGTCTGTTGTGATGCTAATAAAGAAGACACAGGACATTAATTGCAAAAGAGTTTAGCTTTATTGATCTGTTACAGGAAAAAA--------------------------------------------GATGGCATTTG-CCATagattattttacatatttc--attacattttcaatcaaAATCACAGTAGGAATTTCTGGAATTATAATAAACTGATCTTAAATTTT-TATGGAAG-GATAAAAGTTATCAAGTAAGTAGCTCTAAAACGGAAAAACAAAGGGATGGGAGTATTCTACCAGAAAATGAGACATTTGAAAAAGAG

a score=8978
s chr3           101621822 730 + 160039680 AGGACAGTGGGCAAGCATAGACAATTTGCATATCC-TATAAAGAAATGATGTTCACCAGGACCAGCAATCACAGGGGAATGCCACAGGGCTCTACAGAGAGGCCA----CTTCACCT-CATGACCCGGGCAAAATCTGTGCAGCTAGCCAGGAGTAAGTGTTGTAGTGTAGAAGATGAAACAAGGCCTCTG-------AGTA--ATACTGAA----TACTGCTCTTCTATATGGGGAGCGGCACAGCAGATTTTACA--GAAACTACATGTCCATGAGCCTATAATTCAGCAATCACCTTCTTGTGGACATACCCCAGAGGAGCTGGTCGCT--AGCAGAAATTGCCCATTCCTCTTTGTGGGAAATGTCTCTGAC----ATCTAGAGCGGTGTAGATACAGTATATTTACAGAGATGTTCAG-GAAGTGATATTTTAAGCAAGGCAAGCATGCATTCTGAagtatatagataacagcttctggtgtgtgatggaatagaattcagcatgcagaaatataaattagatttacatgtagcacatggatagttttcataa---acaatgtttgagtaagaaatcaaacaggacttatagccccatttgatttacatattttaaaacataga--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------catacacacaTTCCCTTATGAATGCACATTTGCCTAAACAAACACAGGCAAGCTGGGCCGGGAGACTGAAATACACTAGATTTGGAGCTGTAGCAGAGAGCATCCTAGGGAGTAAGGATGGCGGGTGCCATG
s HiC_scaffold_1 111673677 936 - 233722169 agtaaaatgggCATACATAAGCAATTCATACACACATTTGAACAGATA--GATCAACCTTGCTGgcaatcacaa---aacaaaacagaggactATTAAGAGGTCAGGTACTTCGCCTGCATCAGATGGCAAAGATC-ATGGAGTCAGACAATACCGGATGCTGTGAATTGCAAGTTGCATCAGTGCCTTCGTACCACTAGTATGATAGCAAACTGCTACAGCTCTTCTG---AGGAAGT----CTACCAATTTTATATGGAAGTTCTGTATATGTGA--------------AACCTTCTTTTTGGCTACATATGTCAGAGAAATTGGCCATTTAAGTGGAAATTGGAAATTTCTCTTTGTGAACATTTTTTCTGACCCATATAGAGAACAGTGTAAATATGGTAAATTCACAAGTGTGTTCAGAGAAGTGTTTTTCTG-----GATGAGTATAGAGCTGGAAATATATGTTAGATTGATTTGTGCATTTATTAGAATAATGTGCATCTGGCAGAAATATTAATTAGATTTACATGCAGTATACAACTATCCTTCATATGATAGAGGATTAAAGTAAGAA-TCAGGTAAGACTTGTAGcacaat---atttatatattttaaaacatagaatataaatactttcttttaaaatttattttaattggcaTATGCTTGTGCTTTGTAATAATTAGATTCATCTTAAGGAACTGATAGATCATATCTTAATCTTAGCCtgccttctcttccctccttgcTCACCCTTTCCCAAATCTTCTTCTCATCTCCACAAAGTTTACCTCCTTGTTTcctatcatgttttattttgctctttaaagtaTTACTTACACACACTTTCTTGTGCATATACAATTAC-TAAACAAACATAGGCAAGTTGCACTGGAAGGCTTAAATATATTAAACTTGGTGCTGAGGAAGTTAGGAAAATATGGACTGAGTATCGCAggtaaaatg

a score=94789
s chr3           101632710 6889 + 160039680 [encoded data, 7957 characters]
s HiC_scaffold_1 111683263 7226 - 233722169 [encoded data, 7957 characters]

a score=33157
s chr3           101640212 4082 + 160039680 [encoded data, 4895 characters]
s HiC_scaffold_1 111690628 4457 - 233722169 [encoded data, 4895 characters]

a score=19044
s chr3           101645587 2166 + 160039680 AGGACTGTCAGAAGTAGGCTACTACTTTTCTGCATAGTTCTGACCAAAGCCTAAATGAACAGTCTGGTG-TATGAAA---GATCCTTGCTGCCTAGTTTCTTACAGGAAAATCAGGGAGTAAAGATGGGCTTTTAGTCAGGGTTAGGGACTTTTTAAA--AGTTCTACCTGAGATGGAAACTACTTGTCTTCTGGTAGTTTTTAACCCTCTTTGCAAGTGAAAAATTCTA--GAAAATTTCCCTAGAAAATGCCCCTGCT--GGCAACCCCAGCCCACCCCATACTCATGAGAACCACTCCAAGTACAGGTGGCATTGGACTTCTGAGTCTCTGAGTAATTT-----CTTACAGAGCTGAAATCCAGCAAGTTCCCCATACTGTTTTTTTTCCCCACCCAGGACAAGCCCTACACTCTGGTCTTCTGCTTGCTGTCTTTGGCTTTGCAGAAATAAGCTAACCCT-CCCTGATTGTCACAGATGACCAACA--AATGAGAGAGACCCTTGAGAGAGTGGGAGGACTTGTGTTCG--GCAAATGCATGCAGGACACAGGCCAGGCAGGCTTTCAATGTTGGCTGCATCTACAGGATTCTGATGATACCGTTTAAAACGCAGCATAAGCAA-TCAGCAGGCCTGGGAGATGTTAAGTAGTTGCTTTGTAGTTGGTCTCTGA-----GGTTGTAGTCAAGGC------CTTAGAGCTATGAAGTTGGGACT------CACTGCAGATTGACT-GCTTTAGGATGGGAAGAAAATCTCTGTTCTCATCTGATCTACCTTTTCCTTGTTTGCGTGCACGAGTGCACGGGAGAAAAAGAGAGGGGGGTGGTAGGTGGGTATGCACTTGAATGGGAAGTGCACTTCATT-AGCTACTC--TGGGCTGTGACATTGCTACTGTCTCCAAACC----------ACTTTGAAGATGGCTATACTATTTAATCAGGTTTTATTTTTTACCTTATTTTATTTTTAATTTAAttttgtgttttgaaacagggtttctccatgtagtcctagttagttatcttggaacttgctctgtagaccaggctggcctcagatgggagatctgcctgcctctgtctgttaagttttgggactaaaggtgtgtaccaccactgaccagctCAGGGtttattttaaatatataaattCATCTCTTTATAACAGAAAAAAAAAGTCAAGAAACCAGTAAAGTTTATGTTTCCTAAATCTCTTCCAATTAAAAAAAAACCTC-----CCTCTCCTCTCC------CCCATTT------TAAGCCGAGC--GAGGCAATCTAGAGAGTCTAATGCTGTGCTTGCATGTTAATTATAGGTTCCTCAGTGACATGTGTGACCTTGACTTTGAGTAGTTCTGGAGCGTTGAGGATGGAACTGTAAGTGGGTTGTTGATACAATGTGCTTAGAAGCAGGACAGCCCTCTCCCTTTCCCACAGCAGAGCACATTAATTTGTTTTTGGTGTGAGTACTAAGGGTGCATTCATTCTGCAGAAGATTAATTTAGACTGGCTGTATAATTGGACATCACTGGCATTATTCATGGTGGCTGACAGTGAATGAGAGAGAGCACCCATGAGCACAGCTCAAC-CAAGCTCTTGTTGGTTCGAGGTTTGTATAACGAAG-GTTGGAGAGGCCAGCCAGCAGC--CTATTTCTGGATCAGAGTTCCTGGTTTACCTAAAGGATCACTTCAGCCTgggggggcggggggggggacggatgggagggacgggggacagggggacagggggacaggggTCTCCCAAGGCAATCAGGATAAATACTG------GCCAAGTTACCAGCCATCCTG--------GTCTCCTCCGACAAGGGACCTGGGGGCAGG-GCAGACTCCTAGTGATGCTGATCAAATCAGTTTGTTC-AACTGAGCTTGGAGGAGTGAAGGGGCCTGGGGGCTGTCCTAGAGGAGACCT-------GGGAAATGGGAGGTGCTGAGCTCAGAAGTGCATGAGGCCTACCCACTGGTCATGTTGTTAC--CTGGGAGGCTGGATTTTTCTACCTCAAGTCCCCATGTACGTTTTCTGTGAGAAAATGTCATATAGCTACAAATCAATTAAAGAA-GTCTCCAATCCCAGTGATGTTGCTTCTTGCCTCATTCAAACTGAAAAACTTAACAGGCAGCACCTCTCTGTTCTTGAGATGTG----TTCTTTCCCACTTCTAGAGCGGGTGGTAGAGAACTGTGGGAAAGGGACCTC
s HiC_scaffold_1 111695206 1865 - 233722169 AAGGCTGCCAAATATGGGATCTTGTTTATTTGTGGTGGTTTGCACAAGCCCAGAATGACAGATTTGGCGGTATGAAATGAGGTCTGTGATG----GTGTCTTATTTGTC--TCTGTGAGGGAA--------TcttacaagggctggggattttcaAGCGCAGCtcaatttcataacaaaat--attgtCCTGCAGTAATTCTTAACTATTTCTATACTTGCATATCACCAAAGAAAACTTTGGTGGAAAATGCCAGGGCCTCGTCTACCCCAGACCAAGCTGGTC-------AGTCTCTGGAGGTACAGGTACCCT-------------CTTTGAGCAATTCTAATGCATCCAGAGTTCAAAACTTCCAGGCTTCC-AGGCTGCCTCTTT-CCTGTTATAGTATCAGCCCTG-------------TGATTGCTATCA--GCCCACCCAGAAATGCCCCAGTCCTTCCCTCCTCTATATAGAT-----ACAGTAATGAAAAAGATGTTTGAAGGTCTAAG-GATCTTCTATTTATAGCCAATGTGTGCAGAAAA--ACCCAGGTAGGCTT-CTGTGTTAGCT------AAAGACTTTGAAGGACAGTATTTAAATTGCACTGTGAGCAAAGCAACAGGGTGGAGAGATGTTTTCTAATTGCTTTGCAGTTGTTGTAAGACATACAATAGTAGGAAAAGTACTGTACCTggagctataaacatgggttttcATGTCTCTGCCAACTAACTAGCTTTGTGATATGAGGAAAATTTC-------ACTTGGTTTGCTCT---CTTGT----------------------------AAAATGTGGGTG-TAGG-----ATTTGATTGTATATGAATTTCTTCCCATTTACCTACCACATGGATTATGACACTGCTCCAAGCTCAAATTCTGGCAATATAACCCAGAAAATGGCTGTGTCATTTAATCAGAATTTACCTT-------------------------------------AAACATGCTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------GTCtccttataa----aagaaaaagtgttgAAACCACAGAAGgcatttttctctgaat-----------aaaaGCAAGGCTAAAGTGCCTCCCCCCTCTGTATTACTCATTCCTCGTATAAGAATAGTCTGAGGTAATTTGGAGAGTCCATTGCAGGGCTTGGATGTTAATTATAGGTTCT---GTGACATGTGTGACCttgatttttaattattcagGAGTGGCAAGTAGAGAATCTAAAGTGGATTGTTGACACAAGATACTTGGAAA---------TCTCTCTTTTTTCCAAATCAGAATGCATCAATTTGTTTTTAGTgtg----ttaaaaatacatttgcccC---AGAGATTAACTTAGTGTAATGGTATAGTTGTGTAATTTAGGCATTATTCTTACTTGCTGATGACAGCTATTAGAGGGAATCTAAGAATGTAGTTCAATACAGGCTGTAACTGGTTTGGGGCTTATACATGGCAGAGACAAAGAGATCTACCAACAACTGCTGTCCCAGGACAGAATCTGCTAGCGTGCTAAAGGAATCATCTCAGCCTCT---------------------TGTTCGGGGCTAGGTACAGGGA---CCAGAAATTGGACTCT-----GACAGCCAGTTGATGTGCTGAACTCTACTGAGGGGTGAGCCACACTGTTTGTTGAGCCTAGTCATGCATGGAAAGTGAAGCCAGGAGTACACACTTAATGACAC-GGGCTATTCAGTGTCTCCAAACTGAGCTCAGAGGTGTCAAGGGTCTTGAAGA-TGTCCTGGAAGAGGCCTCACTCAGAAGGGCCAGGAGATCCTGAGCCAGCACAGGCACTAGAACTGCCC------TATGCTGCTGCAGCTGGGAGGCTGCGTTTCTGTCTCTTG---TTCAGCGTAGGTTTTCTTTGTGAAAGTGGCCCATGGCAAACAATAAACAAAGCAAGGGTTCCAACTCTAGTTCTGTGAATTCTTCCCTAACCCAG-----------TAACTAGCA-------TCTGCTCCTGAAAAGAACAGCTTCTTGTTGACCTTCAGAAC-------------CTATTGTAAAGGGACTTC

a score=33019
s chr3           101648280 3059 + 160039680 CCTCCCCCCTCTTCAGAGCACTGGGGCCAGAGGTGGCCTTTGTCCCACTTCTCTCTTTTTCATGGAACACTGCCTCGAGAAGTCGTTTCTTTAGGTTTAAAGTTAAAGCCTTAACATGTCAATTGATAATTAAAATAGGAACAAATTCATCTAGAAAGTTCATGGACTCAGCCAGCGAGAATAGTATGTTCCAGCCTCAGGTACTTAGGACCCTGAATTCCCTGGCTCCAGGCATGCCCAGGTGTTTACCGCTGGCTGCTCAAGCCATTTCCAACC---GGAGGACT-TTCGCACTGTTACTGCTCTGTGTCAGCAGTCCGGCTGCCTTACATTTGTTCCCTGCTTCTTGGCCGCCCCCTCCAGTGGTAATAAAGATCTGCCATGAGATGAGATTTCCATCCGTACACTA---------------------TGTTTCCATTCCATCTGATTGAACATTTCCTGGGCTTGCCAAGCCCGT---GAGTCTGTCAGCGCCCCAGTCTGTAGTCACCTTTCTGAACCTCTAGCC-------CCGAGCTC--TGAAATCAGGATGGAGCTATTTCTCCCAAG--------------TTTTTCTTCCCGAGAAAAC-CCTCTGAAGATGAGCAAGGTACCTTGTCTTTTACAAAACTTGGCTTGTGGATGGAGACGAGAAGAAATAGTCTCAGTATGAACTCGTGCTAAAAATTCATCTTTTAGGTTGGGTGGCGGTGAgtggtggctcctgcctttcat--cccagtactcagaggcaagtggatctctgtgagtttgaggccagcttggcctatggagccagttccaggacagccagggctacacagagaaatcctgtctcagagggaaaaaaAATCTTTTCATGGGTGAGAGGAAGAATATAGAAATTACCTTCTAATTAACCTCCA-GTTTGGATCTTTGCAAATGCTGAATTCCT--------AGACCTTTTTCCAATGGGGAGACCCTTGGATGGTCTCCGGTGTGATTTTCCTCCA--------------------TCCCTGTAGA----CTAACTGCTCTTTTGTTGTCCTGTTTCACATACAAATGGTGCAGGATTCCATTTTTTCTGTAATTCTTTATATCCCAGTCTCCTCTGGGCCATCCATGCCTTGGAGCTTTGAGCTGTTCCCCAGTGGGTCAGACTATTCAGAGGCCTGTAGAAAGAAAGGTGAGAGTTCAGAGCTGCCTGGTGCAGGTTCCTGCTTGTCTGTGGAGATTTGGCAGAGCCCCAGATGATAGGTCTGGCAGTACG--------------TTGGTGTTTTTTAAATCTGAAGTAAGAGAACTGTGGACTGCATTCATTTTGATGATGACTCGTGGTTCA--GCACCTTCCTCCCTAAGGATGATCTCTGAGCTAGGGCAAATTCAATAAACTTACTCATGAAAAGAACTGCTCAGAGAACTCTTCCTT-GAGTGTAAGTAGTTGTCCCTCCACTTCCATCTCCAGAGACAGTGACAGTTGAGGGATGGGTAGGACAGTGCTGTGGTAGCATTCACCCTGTA-TCATTATCAGCCAGGACATGTGCTTGCAACACCCTGTG---------GCCTGTTGGCACTATTTGCTCCCATGGCTTAAAGCAGCCGAGTGCTATGCTGGATAGGTCTCTGTTGCTGCTGTTGGCT-AGGCTGACCCTGACAATCACTTACTCTACAACAGGCTTGTATGTAGATGTTATGAGAAGAGGCAGCAAAGACCATGCCCACTTCAGC--------TTGTGGGTTGCTCAGCAACTGGAGATTGCTCTTGAACATTCTTCTG--AAGAATtctatcctcaaggcttctctga-gctagctcattta------gtcct-----------------------------------------------------gtgagtataacttgtgttatatatatatatatatatatatata----------------------------tatatatatatatatatacacacatatatacataatatacatatatgttagg---------------------------------ggctgcta--------cattata---ttttcagatttctctagtccattagattcataagattcatatatttaactaccctttgatgtccctttgtggatgtgtcatagagacctcaaGTATAGcatatatatatatatatatacacacacacacatatatatgcacacacacatatatatgcacacacatatatacatatacatatacatatacatatacatatacatatacatatacatatacatatacatatacatatacTTTCCCAACAGGTCATGTTTCTGAGATACTTCT-GTGGGTTGCAT-ATTGGCACATCCATATCAACTTAGGCATCAGCCTTGAGCCCTTTTTCTCCCCATGTCTTTTCCACCTCTTACTCACTTGCTTCAAGATCTCCAGTGGTTTCCTGTCTCTTTCAAAACAGCACTGAAACCACTGGGTGTCACGTAAAGGGCTCTTATTATCCAGACCCTGCCTATGTACCTACCATCCACATCTG-----------CTTCAGTTTCTAGTGGCTTTCTGAATCAGTCATATGTTTTTGTACACTCAGCCTTAACACACtccagcagacccgagctcaattcccagtgtccacacagcagctcaaaacgatctttagcttcagttccagagaatctgatgtcttcttctgacctctgtgggcaccaggcatgcacagggcacacagacacacaggcaggtggaaacatctgtacaaacaaaataaCATTTAAAACAACAATAATAAACTAGTGTGTCATGCCCACCTCCTCCCCCTCCCCCCTCACTTGTCTATTGAGTCAAGACTGTTCTGATGCTGTCCCTTCCTGTC-CATAGCAATCCACCCTGAGGCTTGGCAGCTATTAAATTTTTGTTAGGGGCTTAACACTTTGACTCTTATCTTCTTTGTTTTCTAATCTGCTCAAACATCCTGAAAAG-------------CCCGGT-----------------------------------AAacatagcagcttgttaaaatggtgatgccattcctctggcc-------------tactgaaccagaacccctgtgggtgcatccagcagtctgtggtttgatggtttccacaagtgattctgggatacaggaa-gtctaaggaaccCTCTACTACAGA--------CTGCACAGGTGGTGACAAAGGGCAGGGCTGG-GGCCTCAGTCAAGAGAAAGCC--CTTCCTCTCAAGTACTTGGAAACCATCTCACTGTCTCCCAGGAATGGTAAAAACTGTCGTAAGGTGGACAGCAGCTGGA
s HiC_scaffold_1 111697218 2859 - 233722169 CCCCCCAGCTTTTCAGACCTCACAGGATGGAGATGGCTGttctctttcatctctcttt---ACAGGACACTGCCTTGAGAGG--GCCTCTCTAGGCCCAGAGCTAAAGCCTCCACATTCCAAAGAGTAATCAAAATGGGGATACATTCCTGTAGATAGCTCATGGGTGGAGTATATGAGAATAGTATGTTCCAGCCCCAGGTACTTAAGAATCTGGATACCACGGCTTCAAGCCTGCCCCGGTGGTTTCTGAAAGCTGAACAAACCATTGCGGTCTTGAGGAAGACTATTTGACCCATTACAGTTTGGTTTCAACAGTTGAGTGATTTTAGATCTGCTTCCCCTT--------ACCCCCTCCAGCTATAATAAAGATAGGGTACGAGATCAGATTTCTCCCTGTACACTGTGTTTTTTCCCATCTATGCACTGTTTTTATTACCCCTGACTGAACATTTCCTGCTCTTTCCTAGCCTGTGACGACCCTATCAAAGCCTC-------TGTCACCTTCCTAAACCTCCAGCCATCATTGTAGATCTTCATGAAATCAGACTGAGGCTGTTTCTTGAAAGAGTTAagcccttgttttattttcctgagaaCACTTCATTGAAGGTAATTAAGG--------CTTATGTATGATTTGG-------------------------AGACCC--TATTCCCTGGTGC--------------------------------AGATGTGCCTCATCTTTTGCATAATCTATTCTGTAAATGAGAGAGGATTTTCATG-------------------------------------------CAGGAACACCTagttaaattcattctttggggga----------------gggggaagagaaatacatttaaaattgccTCTAATTTATCTGTAGGTCTGGACATTTGCAAGTCCTGGATTTCCTTATGGTGACACGGTTTTCCAA-GGGGAGACTCTTGAGCCATGTTTAACACGATTTTATTACACGAGATAGAGTGTCTCCTTCTCCCTGTGAACCCCCTGCTTGCTCCTCCGTTACTCTGTCCCACCTAGAAA--------GATCCCagcctctttttagtttttt---tctcacCTCATCTTGGGTTCTCAGGGCATTG--------------TCTCAGGTAGGCCTGAGTATTTAGAAGCCTGCAGCAAGAAAGACAGGTGTTCATAGCCACCAGATGCAAGGTCCTTCTTGTTTGTGGTGACTTGACCAAGCCTTTAGTAATAGGTCTGCCAGGATGAAATAAGAGTCAAATTGGTGCCGTGTTTGtctggaggaagagga--agggacagcatttgtttttgtaatGACTCACGATTCACTATATCTTTCTCTCTTCAGGTGATCTCTGAGC-ATGACAAATTCAAGGAACTCAGTCATGCAAAAATGCTTTGAGAAGAGACTTCTTTAGAGGATGGTCATTTGG---GGTACTTGCTTCTCTAGTGACTTGGGCAATT----TACAAGGAAGGCAGTGATGGGATCCTATTTACTTTCCACTTGTTATCAGC--AGACTTTTCCTTCCAACAGCCTTTGCTTCCATCATCGTGTAAGGGTTTTTTTCTGGCATATCTTCTACCAGAGAAGTTCTGTGTTATTTGGGTGTC-ATGGGTACCACTGCCCAAGGTTGACCTTGATACCCACTTGAACCATAATTCACTCAGATATAGA---TATGAGCATAGAAAACAGGGACCCTTCCCACTGTCACGAACTTTGTCTTAAGCTTC------ATTGGTGATTGCTCTTAGATATTGTGTTGTTCAGATCTTTTTCCTCTGGTCTTATCTCATGTTGGCCTATTTATATATCTtccttggccagggatttagctcagtggtgtaagtgcttgcttggtaagcatgaggtcatgagtttgatccctggtatatgtgtatatatatatatatatatcttctttggactaatttatttattttttatttacttctgtGGTTACA-ACTTCTATCTATTTTAAGTAGATGTGCTAAGACAGTGGTGGCGAATCTATGGCACATGCGTTGCAGTGGCTATTTGTTATCATTAAAAGCTCttaaaggtttgcca--tcactagaGCATCTACAGTCACATGTTAAACTACTCTATGTTATCTCTAGGTGGGTGTCTCATGGGTGCCTTGAATTTTACATGTCTG-ATATTTA-----------------------------------------------------------------------------------------------------------------ACTCATCTTCTTCCCCAAGAGCTTGTTCGTCT---ATGTCCCTGGTAGGTTGTATCACAATCACTTACACATCAACTCAAG-------------------------------------------------ACAAAATTCAAGCACattgataatttttcattttcttcaaaacagcacAATAGCTCCTCAGCATAACACAAAAGGCCCTTATTCTCAAGGCACTGAATACGTGCAGATGATCCATGACTGGCGTCAGCCAAGTGCAGCTCCTGGGACCTCTTGGGCGTAGGTGCACAATTTT-TGTGCCCATTGTTTCTTTACTCCAG----------------------------------------GAATGACTTTCACTTCCTTCTCCA------CTACTGTCTCCT------------------------TGTAGATGTCTCGCTG----------------------CTTTCCA-------------TTGCATCATCAGTATTTCTCTGGTGT--------CATCTCC---------------------------AG--AAAGCTTTCTTGACACCAGCTCTT--TGTCACATGACAGCCC---------CAATGCAGGAATTAG----TTGTGAAT------ATATTCCATATCTTATCT------TTTTCTAATCTGCTCAACAGTCTGGCAAAGTAAGTGTCATTGCCCTGGTTTAGTAATAAAGAAACAGGAATCATAAAGGTAAAGAAACCTAGGGTCTTATTAGAA-----ATGCCAATTTTCAGGCTCCTTGCTTGACTATATCAAACCTGAATCTCTACAGCTGGGTCCAGCCGTCTGTGTTTGCATGGTCTTCCCAGGTGATTCTGAGGAACACCAAGGTCTGAGAAA--CTGTACTCCAGAGCTTGGAGTTATATAGTCCATGAAGAAGAGCCACACTGGAGGGGTTACTTCAGAGGAAAACAACTTTCTCTCAAGTGCTTAAAAACCAACTGAATGTCACTTGGTAAAGAT----ACTGTTCTAGGATGAAAAGTTACTGGA

a score=21956
s chr3           101652845 916 + 160039680 aaatgttcagagaaattttgacattgtctcaactgtattttgataaaatttgttccttctgtaatcttatctatattat-ttatgcattaaaaactttagattaagatattgtccataggctctgccagttgctacagagattcatgacGTTaaacaaacaaacaaacaaacaaacaGCCC-------------------------TGAGAACAGCCAGGCTAGGTAGAATTCAGACCCATGAGGT-TGGCAGGGCTGGAG--AGAGTTCATACCCAGCTGCCCTGG-TGCTAATACCCATTTTATT-CATGCCACCTGCCAACTTGGTCTATTTTGGCCCAAGGCTAGCAGTAAATTGATGGTCAT-TCTGTCAGTTCTCAGAACTGTAGCCAACCAGAGCTC--AGGCCATCAG-------------GCGAGTGGGAACAAGGGGCTATGCTGGTTTTAATTTAAACTCTGGCTTAGTCCTTCAGCTGAATCCAAACTGCCTTAGCCATTTGA-AATAAACCTCTAAGTTCTTTATCCCATTACCTCTGATAGGGAAGATTTCAAAATCATTATCTGTGTTTTTAATATTTATTTCA-----------------TGCCAGTCA--TCTTGGTTTCTATCCAAGCACCTGAAGAG-AGCTCAATAAATATTTATGGGGCAGTTGCCCTGTCCA----GTGAGTCAGGCAGTGGGGATAATGG-AAGGAAGAGACTAAGGTTCTGATTTAGGCGGACACAATGTAACAGGAGAAGAATGTAGGCAGAGCCTATATTTGGGCATTGTGCTTAGTTAGCATAAACCAGCAAGCAGATGGGAATCAGTGGTGGGATGGATTCGCTCTGACAGCATGGGCCGGGGAAGCCTGGGGAAGGGAAGAAATCGCTGGGAGCAGGAGAGGAATGTAGGGCGTGTGGATCTGAGGGGATGGGAGGGAGCCGTGGCT--------GAAAGACAGA--GGGTCTGGAAGAA
s HiC_scaffold_1 111701418 961 - 233722169 AACTAATCTGAGAAACTTTTGTACT----------TATTtctataaagttt--tcattctataatgctttgtattttacattatgtttaaaaaaattaatactagGCTATT-------------------TGCTAGTGAGATTAATGAtaataagaaaagagagaaagagagagaaggggaaggaagggggaggggaaggaaagggggaGAACGGTGAAGGTGAAGAGAAAGCAAAAGTCCGAGTCCTAGCGGGGATAGGGCTAGATTTCAAATGCAGATCCGCTGAATCCCAGTGCCCATTTCCTTTCCTGCCACCTGCCAACTTGGTATGTTTTGGCTCAGGGCTAGCAGTGAATTGATGACACTATATGTCAATAGTCAGAGCTGTGGGTAGCAAGAACTCTTAGGCCGTTAGGCACCAAGAGAGAGCAACTGGGAATGAGTGACTATATTAGCTTTCTATCGAACTCTGGCTTGGCGCTTCACTCAAATCTGAAGCGCTGCAATGGTTGGAGAATCAATTTGCGAATCCCTTTGTCTATAACCTCTGACAGAGGAAGTTTTAAAACCACCATCAACATTTGCAATACTTACTGAAGCAACATTTGCAATATTTACTAATTATGTGTTGGTTTCGATCCAGGCATTGTAAGAGAAgattagtaaatatttatggagAAGTTGTAATGTGCACACCTTGACACAGGCAGtgggaataaaggaaaaaaaaagatcgAGTTCCTTATTTAGGCAAACGTAGTCCAATAGG-GTAAAATGTAGACAAACCCTGTATCCAGGCAAGGTGC----TTACAATAAACCAAAGTGCACATGGAAACTCCAGGTGGCACAGACTCTATCTGACAGCATGAGATGAGAAAGCCTAAAAAGACAATGAATTGGCCAGAACCATGAAGGGAAGGCAGGGAG-GCAGATTTG-TGAGCTGGAGAAGGGCTCTAACTATTCAGGAAAAAGGCAGAATGGTTTTGGAAGAA

a score=40767
s chr3           101654487 2357 + 160039680 Cacaaggcttgtagtactcagcatggtgcctgcag-cactcagcacaagacctagggtgcccagtg--cggtccaggaactgttATTT-----ATTCACGA-----TATTTTATATCATGTTTGTATTTCTCAAACCCTCAGGTCTTTCTCAAATCCCCAAGTCAAGATTCCTTAGGTACTATTTCTTTGAGCTTTACTGtatatatatatatatatatatatatatatatatatataGCTTCACTGTGCCTCCAgtattttattgagtccattttacagagaaggcaagcaagacacagtaaaattgaatggcagatc-aagatcacattctagccacagagaaaagccaaggctGTAGGTGAAATTTGCAGGCTGATTCTTCATTCCACTTCCTG----GGGAC--------ATTAGCATCAAGGAACAATCAGGTAAGTAAGGAACAGTCTGTTCTCTGGGTCCT---TAACAGATTAACCTTTGTCAGCAGTCCTACCACATAAAATATTTTATGAGTTTGCCTTGCAGTGGTGAAATGTCAGGCTTTG-AGTATCGAGGTGACTTGTGAATGCAAACCAATTCTACTTGCTGA----------------AGTCTTTCTTGACTTGTC----TTTCATAAGCAGCTCTTCCAGCTTTGAGCGTTGGAGACGACGCTTCAGCACTGAGCCGACCAGTGTGAACTCT-----GAATGCTTTG---------------------------------TTCTGTGGACTGCTTAAATTTTGGGGGCCTCTGTAATATGGGGTGCTAATCCTAAGGCAGAGGTCATAA--TAGAGAAGACAGATGTTTGAAGACTGACTACTCAGTCCACATC-----CCA------TTCACCAAGCACGAGTCCTCTTTTCTTGTTTCAT----TCTTCTCTGATA-------CCGAAGAATAGCATGGCA-CAGCATAGGCACAGAGGGAACACTGGAAGTATTTATTTTGTTGGAGGTACTAAATGCAAGGAGA----------------------AGATGT----------TCTGACTGCTGGGTGTGAGtgg--tcatggatgacacatgtctgtgatcccatcacacaggaggctgaggcaCTGCACGGTGGGTGACATAGAGTGACT-------------GTGTCTTGA------CAAAAGAAAA-----------------------------TGAGTTCTGACAACAGCCTCCTGTGAGTGATGTATAAGTGGGCC-CAATCTGAGCTGCTGTCACCTACACATCTAAAATGTGCCCAGGGTATGTTTGTTGTAGTGAGGTTTC---TCTCTGACtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctctctCTGTGTAAGGGAATACCTGACAA-----------TAGCTAACTTCTAGACTTCATACCCAAGGAGCAGGGTACTGTAAACACG------------------------------------------------------------------TATGAGCCTGAATTTCAGAGGGGCTCCCATTTCACTGGGAGGC-GAAGCAGAGAGGCCCTGACTGGGTGGCTATGGTGACAGGGCTACTGTTGATCAATATTTAAACAGAGGCTCCTGAGCAGGTACACGCACATGGAGGAGCACAGGTGCTGGGCGTACCTGCATCTCCTTCCTGGGGCTCAATTGCAAACATCCGTCAGAGAATAGGTTTGTGCAAATGAGGTACTGGTAGCCAACTGACCTAAACCCAAATGTCTTCCCTGTGTTCCATGGACTTGGAGCTGGGTGACAGCACTTGTGCTCAGATGGAGTGTTTAGCTGTGTACAGGGACTGGCTGGAGGGGCCAGGACACTGTTCATTTTATTTTCAAGGACTGGCTAACCCCAATTGTTCTTCTTTTAGTATTTAGAGTGAATTCCAAAGCTCTCTCTTACGTTTTGTGAGTGAG---CTTACTTTGTGTGA-------------------GTTCTTGTCATCATGGACCATTAGGGCTTTCGGCTAACATGTGTGAGTAACCGATACTAACCAGACTGCCCACCTTCCCACGGCAGACATTCGTTTCTAA---GTAACGACCTGTGTGGT-GACTAGTGCATCCT--------------AACCATATTTCCCCCTCTAGGTCAAGTAAAACTAACAGAAGACCAATGGAGCC-TTCCcttctgcttctacacttgttatccggaaattattatccttgctccatttaccccctaagatttggtaaagataaaataagagagcataagtgaaTTAGTCAAGAAACCGAGAAGGGATACAGAATATCGGGTAGTAGATTCGTGCAAcagcaaagctcagttgctttggactcctcttgtgcagaattcatgggcacccagagggggcattcagaagttcacctctgctctgttacagaaagggatttattaaataattgaacaccatgaaataatagatgagggatatgtttaacctacttatgagaatgatccggcttcacacacttaagagtggtcatttgcaaattaaaaattcatgagt--cactcctgtgttctctccagcaagtcctggaataccttggtttagctacactCAGCTGTGCAAATCAGAA
s HiC_scaffold_1 111704824 2442 - 233722169 CACAGTGTTGTAAGAATTCAGTGCAATGACTGTAGGCCCTTAGCACAGAGCCT---GTGTATAGTGAACAGTCAATGG-CTGTTGCCTTTATGGTATACGAGTGTCTATTTCACACTGTGCTTGTATTTCTTAGA-----GGG----------------AAGTCAAGATGCCT-AAATAACATTTTCAAGACCTTT--------------------------------CATGTATGTAGCCTCATTGTATCTTCAGTATATTATTCTACTTACTTTATAAATAAGGACAGCAGAATACAGCAAAGT-AAATAACAAAACTGAGATCTC--TGTAATCA---AGAAGAGCTAAGTTTTTGGTTTAAATTCCCAG----ATTCTT-ATGCCACTACCAGAACAGTGACCAAAGTCAATTAGTGTAAAGGAACAGttacaaaaataatgaacaatCTGTTCTTTGGGTCCTATCTAGTAGATTAACCTTTATCAGCAGTTCTactccataaaatattttatgactttGCTTTTCTGTGGAGGAATGTCAGATTTGGGAATATT-AGGCAATTCACTAATGCAGAACGATTTTATTTACTGAGCTTCAAAAAGCCCCTAGAATTTGAAAATTTGTCATCCTTTCATAACCA--TCTCACAGAATTGGACATTGGACATAGATCTTAGTTGCTGAGCAGATCACAATTAACTCCTTACAAATTACTTGGCATTAGGAGCCTAATTTTGCCCTTACTTGACATTTCAGGGAGCTACTTGGCCTTTAGGAGCCTC---AATATGCA---------------CGGACCTCTTAAGTTGTGCAAGAGGGATGTGAAAAACCTACACACTGCGTAGATATTAGGGTCCAACAGTGTTCATTAAACATGAGTTGCCTTTTCCTACTCCATCCCTTCCTTTCTGATGGTTGTAGCTGATATTTAACAAAGAAACAGCATAGATAT--------CTTTGTAA----TTCTAATATCAGAAGTCTGAGATGCTAGGAGATTTTATAAAGGCACGTGTGGATAaatgtgtttttctccttttaaaactttgagaAACTAGACTCACAAATTAGACACTGCTATTCTCACTTTA---AGAATATTTGAATACTTCTTTGTTTG------AAAGTGACTTCAGCTATTTTAAGTGGCCTGAGATAGTCATAAAAAAGGCAGTGTTGGACAGCTAGGCTGGACACACTGCATTCTGAAATCAGC------TAATTTATATATGCTTGGGCCTCAAACTTAGCCTACATCACTTATATACATGAAATGTGTTCAGGATAT--TTGTCTCAGTGaagtttcaaattttcaaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtat-------------------tacaggAACAACTGAAAAATACTATAAGATAACCGGGTACCAAACT-CATACTGAAGAGCAAGGGCCTTGTGCACACACTCATGAGCTGGCCTGCGTTTTATTGCCAGTGACATTTCTTCAAAACCCAGCTTGTTCTGCAGCTCTATGCGCATGCACTCTAAGGAAGCTCCCATGTCAATGGAAGGTTGGAGCAGAGAGGCACTGGCAGCACAGCTATTGTGACAAATCTGCTGCTGATTATTATTTAAACAGAGATT--TAAGCAGCCACAT------------CCACAGGTGCAGGAGGGACTCTGTTCTCCTT-GTGTGGTTCCTCTG--ACTCTACTCTGAAGAAACTGTCAGTGTCAATG--------------ACCCAACCTGTGTCCAAGTGTGTTATCTGTGCTCTGCAGACTTGGAGCTAGACAGTGTTACATGT--TCAGGCAGTGCATTTAGCTATGTACTGGAAGTGGCAGGAGGAGATAGGATAT--TTTATTTACCTCCAGGGGGGTGGTTACTCTTAACTGCT-GTCCTTTAATGTTCAAAATGAATTCTACATTTGtctccatcaatagatgaatatgATTCTTACAGTGTGTAGATGTCATACTATCATGCATGTTCCCATTATCCTGAAGCTCTAAGACTTTTGACTAATATATGCTAGTAACTGGTAATTGCCAGGGTGTCCACCGCTCTAT-ACATACATTTATTCCTGATATTTACTGACTTTCAGAATAGAATTGGGTATCCTAAGACttatatctgaattatttttgcCCCT---AGTTAACtaaaagtaatagaaaactaAGTTAGCCTTTCCCAAATGTTTACAGATCTATTAAATGGaaattattgttactgttt---------------------------taaaaaaag------------------------aaccg-gGAGAGATTCAGAAATGTAGGCAGAACAAT--TTTAACAGGATAGCTTAATTGCTTTAGATGCCACTTAGGCAGAATTCATGGTGATTTAGGATTGG--TGCAAAAGTTTACTTTGGTCTTATTACAGAAAAGGATTTTCTAAATAATTAAACAATGTGAAATAATAGATGAAGGATATGTTTAACCTTCTTATGAGAATGATCAGGCTTCCCAAACTTAATAGCAgtcttttataaattaaaaattcatgagttacaCTTTTGTGATGTCCACAGTAAATCACGAACGAGCTCAGTGCAGCTACACTCAGatgtgaaaacaagaa

a score=37315
s chr3           101666723 1241 + 160039680 TGGCACTGCGGTGCCACAACCTCTTCAGCTA---------------CACTTGCACAAGGAAACCTATGTCTGATCTGGCTGGAGAGTGCGACATGTGACTCTG--TTCCAAAGC---ATCAGAGA-------------GTGCCTGAGTCTTGCTAACTGCGTGTTAGACGCC--------------------CTTTCTGGAAGTTTCTCTTCCTGGGCACTAACACCAGATAGACACTACCAGTGAAAGGATATCTGTGCCTGGTAACCAGTGAACGGACACCCAGTGCTCAGCAAGAGTCCAGGCTGTGGTTATCTGAACTAAACATAAGT-TATTGTGAGACATTGGACTGGTCACCTCCTTTCTGTGGCCTTTCTCTCTATGAAAGCTGGAAGATGACAAAGTGACAAGAGGTAA------TTGCTATGCACTGTCCTGGTCTCCAAACCCCAGAATACACAG----GAACCTGATCACGCGGCACCCTCAATCTTCCCAA-CGGCCTCCTTGCTGAAGCTGAAAGAAAACTGGTTTCAGATATTACAAACTCACCGTCTCCCTTACTC-------TGTTGCTGGTTCTTTAAGAAACACAATATTGGCAACAAGAGTTATGCTTAGAACAACTCCTGGGAACTGGTTGATCCAGTCTAGTGAGAAGCTGGGGGCACCTTCAGCAAGGGCCAGCCTCT--------------------CCCTACCTGGTTGTTGTTTCCCTTCTTGGCAGCTGCTCCTAC-------CAACCAAGAGTCAGGTGGGGT-ACATAGGGAGAAGTCTGAACCAGCTGAAGCTGCCTGGGACAGCTCT-GTGGATCCTCGCCTTG-CCAGGCTCACCGGGGCTTTAATAATGCAATAAAACCCAGCTTCTAAGGCACACAAAGGCTTTTGGAAAGCAAGAGATAAAAGGGACTTTGTTCTGCTCCCGCTGGGAACAGTATAGATCTACAGGTGTTCCCACAGACACCGGTCCCTTGGTGGAGGCTGTTGCTGGTCTCTGCTCCCCACATCTTGCTGCTGCCTGGGAGCCATGGAAGGCTTAGAATGGAAACAGCCC---GCAGAAGGCATGCTTTAAGAAGCA---CACAATGACAAGAGCAGGCTCGAGAGCCAGGTGTGTTTTCTGCTGCTCTGCCCGCTTCCCTCCCTCTGATTGTGGGACTGTTGGCCC-TGCAGGGAGTCGTGTCCACTTTATC-AGAAGTCATTGTGGGCTCAGTGGGACCCTTAATGCAGTCAGAGCGTGGGTGGCCGCAGAGACAAAGCCATCTTTCCTCTTTCTTGTTCTGCACTG-------------AAGCCTGTTGGAGAGGCAGCCAGGGC
s HiC_scaffold_1 111715936 1308 - 233722169 TGGTTCTGGAATGCTGCAGCCCCTCCAGCTAGAGAATGTTGTTCAGTATTTACATGAAAATAAGTGCACTGGAGCTTGTTGG-GAATGTGGCATTGGAAACAAATTTCTAGAGTTTACTCAGAATTATGTTAATAAATGTGTCTGAGACTTGCTGGGTGCCTCATAAGGTCCAGTGAGAAGTATAGACTATACCTTCTGGAGCCTTATCTATGCAGACCCTAATGTCAAACTGGCATCACCTTAGAAAGGACACTTCTGC-------------------------ATGCTCAGCATGTGTCCCCAAAGTGGTAATCTGAGCAGGACACCAATGCACAGTGTGACCTTTGACAAGTCACCTACCT-CTTTGGGCTTGCTCTGCTTGGCTCAAGGGAGGACTCATATTTACCATCAGCAAAACATGTTGCCCCAGGCCATCCCAGCCCTCAGACTCTAAGGATGACAGCCACACACCTACATACTTGGTTCATCTACTCTTCTCGAGCACCCAGCATGCTGAAGCCCCAGGGAATGTGGTTTCATCTGTGACTTACGCAACATCTCTTCTTCCCCGCTTTATGCTACTGGTACTTTAAGAAACACAACATTGGCAAAATGGATTATACTTAGAATAATTCCTGGGAACTGGATAGACCAGTTTGGTGAGAAGCTAGGG-CACCTTCAATAAGGGCTGGCCCCTTATTCAATAAGGGCTGGCCTCCCCACCTG-TCCCTGTCTCCCAGGTTGCAA--TGCTAGGACAGCAAAGCAGCCAGGAGTCAGGCTGGGTCACAGGATGAGAGGTTTGAACCAGCTGAAGCTGCCTGGAACAGTGCTAGTGTATCCTTGCCTTGGCCTGACTCACTAGGGCTTTAATAATGCAATAATACCCAGCTTCTGCAGCACACAAAGGCTTTTGGAAAGCGGCGGATAAAAGCCACTTTGTTCTGCTCTTGCCCAGAGCAGTATACATCCATAGGTGTTCCCACAGACACTGGCCCCTTGGCGGTGGCTGTTGCTA--CCCCGC-CCTTACCCCTTATTGATG--GAGAAGCCATAGATGGCTTAGAATGAAAACAGCATCAAAAAAAAGGCTTGCTTTGCAAAGCAAGCCAGCATGAGAAGAGCAGATTGGAAAGCTGGGTGTGCTTTGTGCTGA---GCTCTCTTCCC------------AAAGCCTGTTAGCCCTTGCAGGATGCTGCA-CCACTTCATCAAAAAGTCATCGTGGGCCCAGTGTGACCCTTAATGCAGT-GTTGCGTGGGTGGCTGTGGAGACAaagc---ccttcctcctccctgctcTGCTCTGGGCGGGCTGCATCAAACCTGCTAGAGGGGCAGCCAGAGC

a score=33477
s chr3           101669227 2061 + 160039680 ctgtactcttcctccctgccccctgtcctccctctaaccattcaactctctggccatcaccattccactccacccatgaatcaa------ctctttatgttgcatatataagtgagttcaggacaggtttattttgttgcatctgtcttatttcacttaaaataatgtctt----------ctgtgttatcacaaat--ccaggtt-tggggttttacagctcagtggtattc---tgtagcttgcatataccgaatttttgctattggttaatctgct------aatggacacttagttgccccgaaatcttgtctacagtgaacaaggctggggta-------agtgcaggtgtctctttca--cactcactctcctctccatggt-agctacacagtaacatggtaatag-gcaacacagttgct---tttcctgtattttggaggagttcctgtgtggaagtttccataatggctgtattcatttgcagacctgcctgcagtatgaatgagttctctttttctccTTAGGACTCCACCTCACCTTCTTTAATCACTTGATGTGTGATGGGAAGTGCAAACTCCCTCTTGTATCCTCC--TGGAAGTGCCCAGAGCTCCTCTGTTTCCCATGATGGCTCTGCCACTAGACTCAGGGCCCAGGGGTCACTGAAATAATG---------TTTTTTCATGCCGACAAGGTATAAAAGTGACAGCAGCTACAGAAGTCTGTGGGGCAGAATGAG----------TCATAGGTCTACATGTGGCATCT---------------------AAGAGGCTGCCAGTCTTCGTCCTGTCCAACCCACTGAAAACCAATGGTGC--TCATTC---CAAGATAGTAGAACCACTTCCAGGCCGTGGAGGAGTTCCATTAGTTCTCAGAGCAGCCTGTTGGGTTGATGCCTTTGGCTTCTTC------------------CTAGCTT------------------------------------------------CTGGGCAT--------------------------------------------------------------------TCTGGGTG------------------------------------GAATCT-----------------------------------------------------------------------------------------------TCCCTCAGTCAGGCTGGCATGTAGTTCTGCTTCCCACCATGGGCTGCTCTCACACAC--------------------TTAGCCATACGCGTTCAGCCCCTCACCATTGGCTATGGTCAAGCATGTTCTACTGATG-AAATGAAATATCCTCCACACCTTCAAGGATTTCATACACCAGACAGATGGTATCCCCTTTCTGTTCCAAACACCTGAGGTTTCCTATCGCCTATGGTATCAAGCTTAAAGTCTTGGTGCTGTTACTCAAAGTTTTATTTTTTTTGGCCTT-GTCCTATATCCATTCATTTATCTAT----CAAATGCTAGTTTGACCTAACATTAATAAAGACCTGACATGTGACAGTCCTTTTTATCTCCTACTTTAAGAAGTCCTCTTTGTGCC------------CTCTCATTCCTCCTGGCACCATCCTGGTTGACCTGGCCTCCTGGAAGGC---TTTTCTCTTCTCTTTCAAACTGAACCTGCTTCAGTTTAGCCCTTAACTGTCAA----------TCAGTTACCAGGAAACTTGGAGTG---AGGTGTGGCCATCAGACCGCACGCAGGCTTAGACTGCAGCTGGCAAGACATCAAGTTCC----CAGCAGTCCCAGAACAGGCTG--------------cctcgt----------ggctctcattcttttcctt-----atgc-atggcccctcgctgagcgtctgctcctcttctcccgagctgatcctgcccaccccacagtttctgtttcctaacaatgttgacttttgtgtagcttcagctagccttagactctttagtcttcgcggttacctcagg--aagcacctgttcccagtctttgggtatctgcctgtggtgttatttctgtcattgtggcttcccaaagaaaagagttcaggttcccagagagaatctgatctacatagttcctctttgcatgctggtccaagtcatggttctcaggctatccaagagtgacccatgcctatgacttag-------------TCATTTAACCACGGCTGCCTGAAGATA--GCCAAGGTTTGTCTGTGGGGTCTAGAGCTGCAAGAGAAGTTCTTGTCTCCATGTAAGCAGCTTTGTGT--------GTGTGGCTCTGTTAGAAAAGCTTTTAAAGCCTGACAGAGAGCACACCCTGTCTCCATTTCGCTTCTCCCTCTTTTC-TCACTGGTTTGCTGCCCACAACATTGTATTCTTAATTCTTCATGTTTGGATTTGTCTTTTTAAACTTAGATA
s HiC_scaffold_1 111718038 2440 - 233722169 CTTTGCTCAACATCTCTCCATCTGCTCCACCCTCCAACCACCCTACCCTCTGGTAACTGCTATTCTATTCTCTACTTtggttaaataaacttttttaggTTTCACATATGAGAGAGATCATGTAGTACTTGtctt--tgtgactggtttatttcacttcatgtAACATCCTATAGCTTCATCTATGTTATCACAAATGACAAAATTCTAgctttttatggttgaataatatttcattgtgtgtttTATAGGCCAtattttcttcatgcatttatccACTGGCTAAATCAGGCACTTAACTGACTCCAAATCTGGT--GCGTTGAGTAGTACTTTTGTACCATAGCAGCATAGATGTCTCTTTGAAGTACTGATTTTATTTCCAGTAGTTATATACTCAGTAGTGGGGTCATTGTGTCACATGGTAgctctattttttatgttttgagtaACTTCC---ATGTAGTCTTGCATAATGCctacactaatttacattcctatcTGTCATGTGAAAAGGCTCCCTTTTCTCCaagggtattttttttc----tctttaattgtttCCTGTGGATTAAGCAATG-ACAGGCCCTGTTCCACCCTTTGATGACACTATCAGGAGATTTTGTACATCTCAGGAGGGA-----CACATGAGT--GGATCTGGGGAGCACTCAAAGAATTCCTGAGATCTGTGCTTATGCTGACGTGgcaaa-----gacagctactacaaatgCCTGATTGAGAGGATGAGGAGAAAGCCACTGTGGGTCCACATGTGACATCTGGGTGTTATATCAAAGTCTGGAGGAGGCCCACAGCCTTTATCCTATCAGGTCCTCTTAGAACTGATGGTGCATTTATTTGTATGGGAATTTAGAGTTGCTTCCAAG----GAGAGAGATGAAGTATTTATCCATGACTCATACCTAGCTAGTGACTTTGGCATCTCCACGGTGTGACCACCTTAGCTGGCTTGTCCTTTTGTTTTTAgggttataataaaaaatataaaaaaaaaataagccaggcatgatggtgcatgtttgtaatctcagcattgagCGAAGCTGAAAtgagaggatcacaagtttgaactcagtctgggcaacttagcaagaccctttctcaaaattaaaaactaaagagtctgagaatgtagctcagtgtaaatctatctatctatctatctatctatctacctatttatCACAAAACAATTGCTTTCCACTCAGTGGCTGTTAATCTCCCTCAGCCATGCTAACATATAGTTCTGCTTCTCATCATGGGCTGCTTTCCTGTTCTTCTCTGTTCTGAGTATGTATTAAGCATACATACTCAGCCTATTATTGCGGGGCAAGGACAGGCATGTTCCACTGTTGCAAATGGAATCTCTCCCAAAATCTTGGTGGTTTTTCAAAT---ACCGATggtatttcctttctgtttcaaaC-----TGGTCTCCTATTG-TTATGGTATTGAGTCC--AGTCT---TGTTCTTACTAAAAGTTGttcattctcttgcctcagtcctatattcattcattcattcattcgccAAATACCAATTTAACC------TACTTAAAATTTAAGATGtgctaatcatttttat-ttctactttagaAAGTGCTCTTTCTTCCTGTCCCTGATAACTATCATCTCTACTTG-ACCACTCAGGATGACCTAGGCCCCTggaattctctttctttctactcTGCCTGACTGAATCTGTTTTGGTTTAGTTGCTAGCTTGCAAGGAGCAGCATTCAAACACTCGTAGGCGAAGAGTGGCAAGAAGTGGTGGCAGGACTACACGTAGATTAAGCCTGGAGCTGGCAAGACATCAAGTTCCAGGGCAGC--TCTCAGGCCTAGCTGCTCCAGCTGACTGCCCTTGTTTTGGTCAaagactcttctttttttttttttttaatgctatggCTATTA---AGGTATATGCTCTTCTGCTGACCAGCTTGTTCTAGCTACTCCACAGTTCATATTTCTTCGTA--GCTGGCTCCCACATGGCTTTGGTTTGCCGTGGACTTTGCCGTC-TCATCTTTACCCCAAGGTAAATTCCTGAAGCAACTCTTTTAGCAGCTGCCTGTGCTGCCAGTTCTCTCTTTTCAGTTTCCCAAA--------TTCAGATTCCAGGAAAGAATCAGATTGACACAGCTCACCTTTTTGTGCTGGTCCAAGTCAGGGATCTCGAGCTGTGCAATGACGAACCATGCTCCTGGGTCAGATGCTTTCTCTGATCATTTAACCTTGGCTG---GAAGAAAGGGGCAGGGTCCACTGGTGGAAAC-AGAGTTGGAAG----------GTTGCCACAT-GGCAGCTTTGGGTATGAGCTGGTGCATCTTTGTTACAATGGCCTTT-AAGCATGAATCAGACCGTATCTCCTCTGTATTTCTCTGCTCTATTACTTCATCACTTATTTGTTATT-----CATTATGTTTTTAGTTATTCATGTC--GATTTGTCCTTTGTAATGAAGATA

a score=34820
s chr3           101685528 2777 + 160039680 ACCAGGCTCTGTGCT----GAATAGTGCGTAATCTGGTTCCTTGTC-ATGGAGAACTGATCAGAAGTGGGCAGCCCTATTGC--------AAATGAAGCTATGGAAGCAC----AGACT-CAATATTTGCCTAGGGTTAGAGTCTTAAAGACAGTGCAGC---AACTTACGTCCAGATCTTCAGCTCTTGGATTTTAT--------TTCCTTGTCCCTCCAG-CTCTCCCCTGGGCCAAGATCCTGTACCTCTGTGTCACCAGCAGAGAAAGAAGTCCATCCATTCGTCAAGTATTCATTCTGCATTTGCCCACCATGAAGGTAGCG------TGGAGcaggggtcgccaatcttttctgtataaaggaccaggcagtaaatattttgagtttttcaaccatgtagaccattataatgacatctctctgcgattgtagttaaaaaagagaacagagtgattgggtgaggttgtgttccaataaact--ctatttacaacctcaggctgtggtctgggtctggcccataaactgtaCCCctgctctaagtactggggttatgattaagaattaaaaacaaaataagagcaaacctttctctttgtggagctgacactccagAAAAGGCAAAGAACTTGTATCCCTGGCtgtcctggctagttaatgtcaacttgacccaagtta----gagtcatcagagaggagggaatgtcaaccgagagaaaaacacctccagaagatcaagctacaagggattttttaaattagtga------ttgatgg--gggag---gcccagcccgttgtgggtggtgccatcctcggccagtgg----tccagggttctataagaaagttggctgaggaa---gccatgaggagcaagcaagcaaTAAAGCAGAGAGTAATAGGAGCAGGACACATGGTGGCCTC---CTCATGTGCAGG---TAGGGGTGTGGTTTTGCATTTTTGTAGAGCTCCCCCCCCCCCACACTGAATCTTTTAGAAAATAAGCCCTAG-----CTAGCACTGAAGGGGCAGGAAAGGGGGCCAAGAGcagagcctctcagcctccctaacgct--------------------------------gtgacccttccatacagttcctca-acttgtgatgaccccacaaccataaaattatttttgtggctattttataactgtaattttgctgttttgaatttttttgctgctgttatgaactgtaatgtaa--------------------atacctgtggtat--tca-------atggtcttagatgacccctgtgaaagagtcaatcaaccccaaa----------------ggggtctctaaccacaggttaaga----------actgctgA---------------Ccaagagactctgggaggctgaattctcattcccttcctgcttgtgaccttgggcaagtcatctctgctttctgagcctgggttttgtcgtccataacaggaaagt-gtCTTCCCTCCTGACAGCAGTAAGACATCTGGT---CTGGTGTTCTCTAGCCGACAGAACCATTTCCATTCACATCCCTACCTCCTTTGCATCTCTACCTCCTCAGCCCTGGACCACCCTCTTCGGGACACCCTGGCCACATC-----CCTTTCCAGCAGCCTTCAAGATCTGCCCCTCACACCCACTGTGCATGAAGTCCGACTTTTCCC-TGAAGGCTCCCTTGCCTTCTTGAGTGTGAACAGGTAAGATGCCTTACCTATGACTCCCTTGGCTTATATCAACTAAATTATTTTCCTTTCCCATAGACCTTTGAGCAGAATGGTGGTTGGGGGCCTCACAGGAGCTGTTTGCAAACCTATAGAGATAAGTCAAATTGCTTTTCTGTTTTG----------GGCTCTCAGAGGCAATTCTTGTGGCTT-TGAGACTTCTGTAGGAACCGAGAGTTAGTTGATCAGGCCCAGGACCATCTAACGTGCCTTGAGATTCTCCTACTAGTCTGGGGTCCAGACCTCATGTGC--------AAGAGATCTTTGGTTCCTGGCACTTACTCTTGGAAAAGTTAAACTTCCATCTACCCTCTTTGTCTG--AAGCAGTCTCGGCAGCTCTTCAGTTTAAACAACAACCACACAACAATTCTCCGTGATGGCTCCTACCAAGGGCGCTTCAGCCCGC------GGAACACCTAGAATCAATGTAGGTAATAGTGTGAGGTGGG----TTCTGTAGAGAGAAGCTGGTGATCATTTGCACAAAGGAGATTAGCTTGATGTAAGGAGTTTGGG----TGGTTGAGAGGTGGGATAGACCTCCACCCCCCACCCCTCTACACAAACCAAGAGGCTGAGTGTTGGGAACTA-AAGCATCCAGATTAGGGT-AGGCATAGGAAGTTCCAGGTTCATTGGAAAATTAACCCAGTGGAGGAG---AAAGTACTGCTTAGATCA-CAGCTGACTTGGTTTTCTCAGTTTGTGTGACGGTCACTTGTCCTTTCTGAGCC-CCCATAATTATTTCcagaagaggcagtgcatcgtagggaagta-tcaaggtgtggagtctgttggatcagcatggatttttaatcttggctctgatgttctttccttgtgtgccctttgctcctatttcttagtctcttggtcttttaaaacttggacttttaaataag---gagaataccttcccacccagaaatgaggattaga-----------acatgacagcattcaaaatactGA-TGTTAATATTATATACACTAATTTGCTCCAATATATTAATCCAATTGCTTAACATGGATAACAAGCCTTTAGTAAATGTCATGCGATTAATTAGATGCTACAGGCTCCATGTTCCAATTATTGCTTACAGAGAACCCGGCAAGGCATGAAATATGATGAATTTCTCTTTCT-----GCTCTCTGCTGTCTGTGTTACCTATTGTGCTTCCAGAAGTTCA--------CATGTGTGAAATCTAGAATTCTA
s HiC_scaffold_1 111746002 2751 - 233722169 ACTAGGCTCTGTGCTTTCTGTGAAGTATGCAGTTTGATCCTTCACCGAAAGTGGTCTGACCATGAATGGCTAGTATTATTGCTGTTCTACAAATGAGGCATGTGAAACACCAAAAGACTACATCATTTGCCTAAGGTCACATCCTTGTAGGTAGTATAGCCAGAATTTAAGTCCAAGGCTGGATGTCTCGGAATTCTTGGTCTATATCCCCTGTCCCTTTGGATTCTCCTCTacacaaagagaaag-aagttTGTCCCACTAACAGAGAAAGAAGTTTGTCCATTCATCATGTGTTTACTGAGCATCTGCT----GTGAAACAGGCAATATTCTAGATCAGTGATTGTCAA-ATTTCTTCTACAAAAGAccaaatggtaaatatttt-acttttaccaCCATATGGTCCAGTCACATGACTCAACTTGGCTGTTGCAGTTTGAAAGAATCATGGATTGAATGAGGGTGATTGTGTTCCAATAAAATGTCGTTTTGCAAAAGAAGGCTCTGAGTCAAATGTGGTCCATAATCTGTACCTCTGTTCTAGGCACTGAGGTTGTAATGGTGAAATAGACTCCCAA-------AGGCTTGCCTC---GTGGAGCCTGCATTCTAGAAAGGGGTAGCAATTTCT-------GCTGGCCTG--CTGATCATGTGAAAA-GACTGGAGTTGTTTCGGGTCTCTGCAG---------TGTTCTGTTCCACAGGAGCTCCTCC-----------TCACA---GCTCCTCTCACTCTGTGAGCACATCTGGTGTCTGGGAGCTCACCACTCCTGCTCTCGG--GACCCATCCT--GTCACAGgcctttcctgtcttcttt-------ttatttgacCCACTTGTCAT------------AGCTCT----------GCACTTGGAGCACAG--------GGCCTCAAGCTAGTGCACCAGAATTGAGTGTGGAACTTAACAGTTTTCT-GAGCCCTGATCCCAAGATTCTGGCTGAATCCAGAGTGAGGCCCCAGAATTCCTATCCCTG-------------------------TGAAGCTCCCAAATCTTGCTGATGTTTCACACACCACACTTTGGGAACAAGGAATCTGGTAATTCCTCTTCCCAGTTCCTCATATATGTGAT-----CATTGGTACCACATTATCCCCAAGGCTTCTTTA-GGCAAAATCCAGGCTGTGT--AACCACTCTGCT-----TATGAAATGTAATTTACTGATGACAGGCTCTGCCTCCATCACTGAGGCAGAGTCACTAGGAGATGGTGTTGG-TGGCC---ATGAAGACAGCAACTAAAGTCAAACAGGATGAGAAGCGGTGGAACCACT--CCTCAGGGCAAAAGAGCGAGACTATTGCTGAGGCTTGAAAAGAGCATTGAGTGAGTCAAAGAGGCaagatttctctctgttttccagGCGTGACCTTAGGCgagccatttt--cttt-----------tcttcccatgcATAACAGGGAGGTCAGCTAGGATCCTTCTAGCAGTGAGAATTCTGATACTTTTGAAACCTC-AGTGGACATGCCCATTGCC-------------TCACTCCTGGGACTCCATCGCCTCA--------------------------------CACATCAGTCGTCTCTCCCATGCTCTGCAAGATCTGTCCCTTATGTCCACTATACATTCAGTTCAAGGGTTGCTGTGCA---TCCTCTGACTT--TGTGTTTAAGCTGATCTG-----TTACTTATGACCTCACTGACT---------------------CTTTCTTTTGGGGCTATGAGCAG--TGTTGTCCTAGGGCCTCAGATAAGTGCTTTGTAAACCAACAATGCTAAGCCAAACTCATCTCTTCTTATGTTTGCCACTTGGTTCTGGGAG-TAATTCTTCTGGCTTCTAGGACTTTTGTAGGTATCCAA---CAGTTGAGTGGCCACAGAACCACCTAAAATAGCTTAAGACTTTCTTACC---CTAAGGACCAGGCCTC---TGCCACAAATCAAGAGATACTTGGCTACCGGCATCTGGATTCTGGAAAGTTAAATTCTCATCTATTC-CTTTGTCTGTTAAACAG-CTCAGCAGCCCTTGAGCTTAAATaacaactacaaaacaaaaatcatggaTG-CTCCTAGCaaggtttctttagctcattAGAATGTAGCATCCAAAGTC----TAAATAACATCATAAAAAAATCCCTTCCTATTAAAAGCTACTCTCACTAACTTGCATACGGAGAATTAATCTGGCATAGGGAGCTTGTGCACATGGCTATGATGTGCAGCAGCCATCCATCCACCTTC--------------AAGAAGTTTA-CGCAGTAATCTGTGATCAGCTGCATTAGGGTCAGTGGTGGCAGATTCCAAGTTCAGTGGAACATTAATTTAATGGAGGAGGAGAAGGCCCTGCTTAGATCAATAGCAGATTA---TTTTTCAG-----GTAACAGCTATT----CTTTCTAAACCACCTGTAAGTATT-CCAGAAGAATCAATAAATCTTAGTAAAGCAGTCAAGGTCTGGAATC----GGACCCCCATGAGATTTTC-TCTTGGCCCTactgttttttccctttgttccCTTGG-TCAGTTTTCTTAATCTCTCAGTGCTCAGTATTTTTCCTAtgtaaatgagaatgaaaatatcCACCTGTTTAGAACAGAAGGTTAAGGGAGATAGTATACAGGACTGTACTCAAAATTTAGAATGTTAATATTATCTGCACAGATT-GCTCCACAATATTAG-CCAATTGCTGAATGTGTATAAAAAGCCTTTAATATATGTCAAGTCATTAGTTAGACACTGTGGGAGTGATGTTCCAATTCCTGCTTACAAAATGCCTGATGAGAAGTGAAAGATGCTGCCATCCTTAGTCCAGTGAACTGTTTTCTCCCTGGGTAACCTACAGTGCTTCCAGAAGTTCAGGTCCAAGAACACGTGAGATTTGGACTTCTA

a score=4647
s chr3           101694632 107 + 160039680 CTGGGGAGGAACAGAGCTCTCTGGACACA---------CATTTTATCCTGGCATATTGAGTGTGTGGCCACAGCTGGTGGTCCATGGTAGGCAGTTGTCAGCATCCCCACCTGGGA
s HiC_scaffold_1 111752730 116 - 233722169 CTGGGAAGGTATAGATCTCTCTGGATTCATGCCATTATCTTTTGGTCTTGGCATTTTCAATATGTGATTGTGGTTGATCATCCATGTCAGGCAATTTTCAGCAACTTCACCTGGGA

a score=47849
s chr3           101699932 2540 + 160039680 CTCTGTGACGGTTTTCTAAATACTAAGGCACAGCTTTAATTTTCTTTCCCTAGAGAGGCCCGTGAGTGTAACCATA-CCCAAACCTAAGTTTCGCAGCTTCTTCGGGTCAAGGTACCCACCCACCTTCTCATGAGAAACATCACACCGCCCCTGCTGCAGAGCTCCTCC--AAGATATGCCTGCCTCTGCTTGCAGCCCTGACACCCTTGAGTGAGCACAGATTTTTGGCCTCGGTGCAATTGGTAGAATGTGGGGTTGGGGTGGCAAGTGGCTGTGTGCCTACTTCCCTTTGATCAGCTCCTGCCAGGTGCCCGccaccccaccccaccccacccTGCCACCGTATCCTCAGTGCACCTTCCTGCATGCCAGGTCTCAGGGGCTGCTTAGAAGAAGGCTATGAATCAGCAGCTTTTCCTAAGGCAACGTTGGTTGGATGCCAGCAC-CAGCCCTGCCTGGCTTCAACTGGCCCACTTCAGTGGTACCTGGGAAGAGGGGGTCAGAGCCTCCTCCTGGG-TCTGGAAATGAG-TCATCTCCTTTGGCTGCCCTGGGGAGGCAGATGGTCCTGCCAAGGGAG--AGGATTTGGGGACTCTGAATTGAGGGC-------CTGGCACCAG------------------TGAGTGAAATCTGAGGAGTCCTGACTCTCCTATCTTACCCTCCC----------------------------CGTCTGCCACCCTACTGAGGACCACTTCCTCCTCTGTA-TTCCTCACGAGTCCCTTCCTCCGTTGCAGTGCCTCTGCTTCTTCTTGACTGGGGACTACAACTTCCAGAAGCCCAAAGAAGGAAAG-AGTGAGCCAGTTCCTCCAGTAATCGGTGCAGATTTCCTCA---------------------CCACCTTCAGCATCGCTTC-CACAGGGCAGGGTGGACTCAGGGACTCTCGCCTCTCCGACCAGGCAC--------------------------------------------------------AGCTGCCAGTGAATTAGACCTA--ACCAGGCTC-GGAAACATCGTTCTT--------CTTCAGGAGCTCCCACTGGATGGA--------------AAGCAGTGCTCACTTATCTCAGTTGTCATGGTTTGGCCACCAAAGCAGCCAGTAGGG----CAGGAGGAGTGCTGCTCATGGGACAGTTTTATGCTCCCAGATTTCAA-----------TTGGATGCAGAGACCCAACCGTATTGTCCTTTGAGGCAAAATCT------CTTACAGAAAGCAGTG--AGAAACACCAAAATATCGTAACACAATATATACAGTTCCC---CACCAGCTGCTCCTGTCTGGGCACTTTCTTCTGTAGAAAAGAGGTATCCCAGCCCC-CCAACACCACGGGGTAAGGACTACAGGTGCTGGGGTAGCCAGGCATGAAAGGAAGAAGACAG--TTAGTTGTCTGGGCTGTCTTGAACTGTGTGGTGCTGGAAGCTGGAACTAACAGAGTGGAGGACATTCTtccctgttttcata-gaggctggaactgaaggtcagagggatttcaggattttccaaggtcaa---acagcCTGTCGCCC----TTG----ATGCCTCCCCCG-------------------GGGCAGATGAGGGGACCTCACA--GTCAGTTAGTGAAGGAG-----GACAG--------------CGAGGGCTAAGATAGATTGAACTT-CCTGCCTCTTGATGCAGG--GGGTGTGACCCAGCCTCACTGCGGCTCACAATGCGGGCTCTGTGCCAACA---AGATAGAAGTGGCAAGTCTCTACCCGAGGCCGGGCAATTACAATCCCTGCCCTGATCTTAATTCCCATGAAATCCTATAGCATCACATTGAGAGAAAAACCAAAGGAGGTTGCCCAACCCT--------TCCAAATTTCAGGGCCTGAAAGTTGGGGGCCCTGCTCACTTGCCGTTGTGTCGTACTCCCCCACCCCCACCCCACCACCGCCATTATGGGAAGATGTAACTGTGGAAAGCACAGTCCTTTCAAGCCTTCAT--ACCCTGGTCTCCAGGCCTTTCTTTCTCTGAGATAAGGTATCTGGCTGAAGGGTTGTGTGGGGGCTCCCAACCCACTGAGCCACCTTCTTCCTGGTAAGGACAATGGCTGCTCTGTTTACAGAAGCACCTTCCTAGGTCTGGCTTTGGGCCCTGTGGTTACCATGACAAAGCTAGAAAGGAGCCCCCTCTGGGCCTCAGCTCTGGGCAAACTGTGATAAAACATCAATTTTCCAACAGAGGCCACTCTCAATTATTCATGGACTAATGGCTCAATTTGAGGAGCCTTTTCTGGTCCTTTCCTTTAT--CCCTCTTTCTGTGCCAGCTGCGTTTGGCTCTCCTCCTTAATCCACCAACCAGAAGAGGAATGGGGAGGGGACAG--------ATGTTAGGGCCTGTTAGTGATTACAGTACAGTGTTTGTTTTAAAAGCAGGTTGGGCAGAGGGTAAATGGTTTTGCATATTCTTGCTAACCTCATTCCC--------------TTAGACAACTTCCTTGAGTGTTTTG-GTCCCCCTGGCTTCCTATGTCTTCTTTGGAG-------AAATATAGCCTAAAATTCAAACAGCCAGAGCCACTGGGAGGCCAGGCTAGGGCTAGACCAGTTGAGAAAAGAACTGCATCC-ATCCCATGCTATCCTGAAGACCCAAGgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtACTTGGCTTCTTTAAAGGACTGTCTCT
s HiC_scaffold_1 111758793 2616 - 233722169 ccctgcacttatttttcaaatgctaatgtgtgtgtgtgtgtgttgttttc-----aaGCCACTAACCTTCACCATAGACTATACAAAAGCTTTGAAGATAATTCAAGTCAAG----CTACCCACTTTCTCAT----------------CTCGTGTTGTGATATTTCGTCTTATGATGTGCTTGTTTCTGCTCATGGCCCTGAAGTACTTGGGTAAGCACTTTTTTTGGTCCCCAGTGCAGCTAGTGAAATGTGGGATGGAGATGGCAGGTGGCTGT-----TGCTGCCACCT------CCCCTGCCAGGTGGC--CCAGGCCATCAAAC-----------------TCCTCAGTGCTGCTTCCTGCACTCCAGCTCGCAGGGCGCATTT-GAAGAGGGAGATGAGTCAGCAGATTTGCCTGATGTGAAGTTGGCCTGACACCAGAGTGCTGCCCTGCCTGGCTCCAGGTGCTCAACTTCAGCAGAAACTGGGAAGATGGGGTCAGTGCCACCTCTTGGGTTCTGGAAATGAGCTCATCTCTTTTGGCTGCCCT-GGGAGACAGATGGCCTGGCCAGGAAAGGAGGGACTTGGAAA--CTGAGCCAAGCGCTTCCGTGCCAGCACCATGGGTAGTGGTGAGGGCACTGGGGGAAGTTGGAGGAGCCCTGACTCTCCCATCTGACCCCACCTTgcgagcagcagcagcaggtctGTGTTCCTCTGCAACCTTCTTGACTGTAACTTCTTCCTCCATATTTTTTCAAGAATCC---CCTCTGTTCCATTTCCTTTGCTGTTTCTTGGCTAT------CAAATGCCAAAAGACTAAAAGAACACAGTAGCAATCTGGGTAAATTGGTGA--AGTGGGGATTTCTTCAGTGTCCTCCAAGAGTCACTGTCTCCCTTCTGCTTTTCCTCATACTTGGGGGTTAACACTAAAGGACTCCTTAAGCTCAGGCCTAGCACCATGCTCCTGCATTCCTGTCCCTGGCTTGTCTTCTGACAAGTACATTCTCCATTCAGGCTTCCCGTGAA-GAGTCCAAAGAACTGACTCAGGGGACATGCTTCATTCGGGGCGTCCTAGGAGCTCTGTCTGCCTGGGCGCTCCTGCTGACTGAGTCGTGCCATCTGATTTCAATTTTCATGGTTTGGCTTTCAAAGTAGTCC-CAGGGTCTCCATGATATATTTGTCGCTTTCCACTGTTTCACTTGCTTTGAACTTGAGCTGCTCTTTTTCAGAGCCAGAGAAGTACCCTCACTG---TTTGAAGCAAAAGCTACAAAGACTTCAGACTCCAGTGGAAGAACAATGAAGAGTGCATGATTCA--ACAGAAAGTTCTCAGTCAACAGCAGCTCCTGTCTGGGGCC--TCTGCTGAGGAAGAGAACAGTTCCCGCCCCACTACCAACACTGGAAAGAGATCCCAGGTGATCATGCCACAGGCTAATGAGAGAGGGAGTCAGTTTTATTGATCAACATTTTGATCACCAGTATTCTTCC-----CAACAATT--CAGAGTGGTGAACATTCT---CTTTCTTTATAGGAAGGGGAAACTAAAGCTCAGAGGAATTCTGTGCATTTCCAGGGTTACTGTGTATTCTGTCTCCCACTGTTGTATTCTGTCTCCCGCAAATCTCCGATAGCCTCTGTGCGTAACTGAGTGGATCCCACAGTGTAAAGTAGTAAATGAGTTCTTGATAGGTGAGTTAGCAGATTGAGTGTTCAGATATGCCCAACTTGCCTCCCTGTGGATGCCAGGCGGGTACGACCAGGCCTGGCCATTGTTCACAATGGGAGCACTGTGCCAACATGGAGATA-AGATGGCAAGTCTCTACCTG-----TGGCACATATGAGGCTTG-CCTGAGCTTAATTCCCATGAAACTTTATCCTGTAGGATtcaaagaaaaaccaaaggaaatTACAAAACCTTTCCAACGCTCCAAACTTGAGAGCCTTTAGGTCAAAGGCCCAGTTCATT--------------------------CCTTCCTCCTACCTAGTTTATAGAAGGC---------------CACTGTCCTCTT--GGCTTCATGGACTCT-GTCTTCAGGCCTTTCCTCACCAGTGATA----ACATGACTGAAGGGTTATCT-GTGGCTACCAACCCCCTGAGATATCTTCCTTTGGATAAGAATAGGAGCTGTTCCACTT---------------CAAGCTTGGATTTGGGCCC-ATGGTTACCATGACGTGGCTGGAATGGAGCCTC--CTGGATaccaaagctggcaaaaccaatATGGAAAGTCAATTTTCAAGTAAAGGCAACTCTCAATTATTCATAGACTAATGGTTCGCTTTATAGACTATCCTCCTCTTTGTCCCTTTGCCACCCTTTTTCTCTGCCAGCTGCTTTTGGCTCCCCTCCCTAATGCACTGGACAAAGGGTAGAT-GGAAGAAGACAGATCAATCAATGTTGGAGCCTTTTAGGGTTCACAG--------TTGGTTTAACAACAAGTTGGGTG----------GGTTTTACATATTCTTGCTAATCTTATTCCCACTTATCAAGTGCAATAGACAACTACGTTAAGTTCTTTGAGCCCCTCTGATTTGCTAAGCCtttgcaggaaaagaaataaaaatag--taaagtcCATACACCTACAGCCA---GCAGCGCAGGCT-GAGTTGG----GTTAAGAAAGCAGTGACACCTGACCTCATCCTGTCCTATGGACCTGCAGTgcccatttgtatttatttg----------------------------ctcaGCATCTTTAAAAgaccatctct

a score=16671
s chr3           101709032 1147 + 160039680 CAAGGTGCGAGCACT-CCTTCATGATTCTCTGGAA-CTGATCGCACCCTGAGGCTCTGCCCAGCAGCCTTGCCCTCGCCCCAGCTGCCCAGTAGCTAGA-GGCTGTCTGGATAGGAAACAAAGCAGCTTGCATTTATTATTTAACTAAGG-CCCAGGTGCATCTGTTGTAGCATTGGGCACTGTTTATGGTTACAATAAAA--CACAGTTCCAGCAACAGAAGGTT----------CCCCTCAACTCCTAAACTCTG---TGTGAGAGGGGTAGCTACCATTGGCCAATGTCTTTAAGTCTAGCCTGCTCTCAAAGAAAGCTATCaaaaataaataaattaattaaaaaaatCATGCACTGGGTTGGATTTTTGCCTGATCTCTGACTAACAGCAGCAGTTTGAAGACTTTCTCCTGGCAGCAGCTGGGCAGGGATACTCTCAGACACTCTGGCTTTTGTACTACG----------GGAGATAAGGCAGGGCCAGCCTGGCAGGATCCCAGCCGGACAGGACCGGTCCCATCT------------ACCCCGCTTG-------CAGAATCAGCCACA-TATTTTACTGGAAAGCCTTTGTCCCAGGTCTGGTAATCTTAATTGCACCTTGGGGCACCACTGATCAGTAATCTCGAAGTCATTATGTAAGTCTTGGGAACCTATCAGGGGTGCCCACACACTGACTCCAGTGTGTGCCCTATGGTCACAGGGGTGGCTTGACTTATCTGTCACGTGCTCGCTCTGCTTCTCCCTTACTCCGAAAGCAACATCACATTGTGACTCAGTCTTATAAGGTCCAGTGGGAACTGTAAGCT-------CAGCAATCGGCAGGGAAAAGGGCAAGCAT-GGGCCTTAGCTCTCAGCAGCAACCCAGGGCAAGCAGCA----GACGAGGCTTTGGCTGG-AGGCAACCTCTGCTGGGTCTTGGCGCTGAAGAGAACTTTACAAAGTGAGGTCCAGAGCTGATACGTCTTAGGAGAGAGTTGTGTAGACATGACCAT--------------ATGAAATGGGATAAAACACAGAGCTGTGCAGGCAGCTGGTGACACAGAAGGACCTATCATCAGCACCAGTGAGGAAAAAGGACACAGAGAGGAAAAAGCATGAGAACTGTGG----------TCAGAATTTTGACTCATCAATAAAGTAT--------ACTAATTCTTTTTCATGCCTCGTGGAAACTTTAAAAGTGAGG
s HiC_scaffold_1 111769995 1097 - 233722169 CAAGGTAAGAACACTTCCTTTGCAGGCCTCTGGAGTCTGGACACACT---GGGCTCTGCTCAGCTGCTCTACCTTTGCCCCAGCTGTCCAGGGGCCTGCTGGCTG-ATGAACAGGAAACAAAGCAGATTACCTTCATTAGTTAACCAGGTCCCCAGATGCATTTGTTGT-GCCCAGGGTGCTGTATATGGTTACAGTAAAATGCGTAGCCCTGGTATTCGAGAGTTTGCAAGAGTCTCCATCAACTCCCAAACGCAGAATTGAGAGAGGGATAGTTG--------TGTTCCTCTCAAGTGTGACCTGC-CTGAGAG----------------ACTCCATTAACT-------TACTGCACTGAATT-GAGTCTTGCCTGATCTTTGTCCAGCAG------------AACTCTCCACCTCCAGCAGCTGGGCAGGGTCA--TATAGACACTCC-TTGTTGGTACTCTGGAGTAAATGAGGTGATAACACAGGGACAGACTGTCAGGATCTCAACTGGAGAGGACCGGTTCCATCCAGGGTTAGCtggactcttctggttccatcCAGGGTTAGCTGGACTCTTCTACTTGAA----TTTGTCCTA-----AATGATCCTAACAACACTCTGCAGCATTAATGGTCAATC----------------------------AGCCTTTCAAAAGCGAACACAAATTTACTGTCAGCTGTGCTTCA-GGCCACAGG--------------TCAGT---------GCTCAGAAGCACCATTGCTGCA--------GTCACAGCAGGGACCAGCCCAGT------CAGCAGAAGCAATGAGCTGGAGCCAGAGTACTCCA-AGGGAACAGAGAATGCAGAGAGGTCCAGCAGTCAACAGTGA---AAAGCAGGCACCACCGGGAAGTGGCTTTGATGGGAAAGAAGTATGAGAGAGATCTCGGTGCCAAAGGAACCTGTGCAAAAGGA-GTCCTGCGCTGATTTGGCAT-GAACAAAATCAGGCAGCTATCAGCATCCACGAGCTTGCAAATGAGATGGG--GGAATGCAGGGCTGTGTGGGCAGTGAGGGATGAGGGAAG----ATCACAGGCTT---TAAGCAAAATGCATAGTTAGTCACCAAAGCATTAGGA-TGTGAGGAACACAGCTCATAGTTTTGATTCATTGATAACATATTTATTAAGACATACTTTTTTGTATGCTTCACGGGAATTTTAAAAGTGAGG

a score=26654
s chr3           101711403 2180 + 160039680 TTTCAAGATGGTCT-----GAAGCTGAGCC-GTGTTTTTCAGGTCTAGCTTCTGTTTCAGACTCACAAATTCTACAGCACCTTGGTACTGGAAAGAATTAATGGGCCAGTTGACCCAGACACACCATTTCCAgctcagtgaaggtaaatctcttgcctagtgtctcagaatcagctagtcacagcccagatccaaaccttgatttcctccctcc----GTGGAGCTGCCTGGACGCCTCAAAAGGGCCTCTGAATTACTCTTTGCCCAGATCCCTGCAGTAAGCCTTTATGGCTGGCCTCACGGTTT------TTTGGATCCAAGCCAGTGTTGGGGAGGGGTGTCGGGGACGAGAAGAAAACACCTGGGGAGTGACAGGATGGTCC------TCCAGTTAATT-TATCCACATCTGCGGGGACCAATTGGAATCAAAGCCTTATCATGGAGGAGCGTG-ACCCCCGACCTGTCTAAAGCAGCCCTGAATACTAACCAGGGTGCTTAGATGGAGCTAAAAATAACTGGCTAATCACCAGCAGGAAGAACTAACAAGGCCTCAGAAGAAAGGGAAATGTCTCAATCCTCC-TCTCTCCTGCAGCTGGCCTCCAGCTGGGTGGGGATGCAGGCTCCTCCTGGCT-----------GGTAATTAGGCCG--CAGAGGCTCTGGGGCCTGAAGGAACAGGGCGGCCCAGGCCCTGC-----CTTCAGGGGGATCAGTGG--CAGGGTCATTTGGGGTGAGGTGAGTTGGAAAAT---GGTGAACCCAGAGGAAATGAGCGGCCCAGGAAGA---GGTCTGAGGAACCGAGCAGCCAATCCTCTTCGTGGTTAACAGCCTTTCTCTGAGAAGGTAAAATCCTTCGTTTAAAGGAAAGGGTTTTTATTCTACTCTGATCGGCCGCCCCGCCCCTTTGAAAGTCTTCCTTTCTCCTAACGTAGCGGTCCCCTCCAGAAAGCATGACTGGGGTCCACACCTGGGTACCTGCTTGGAAATGACTTCTCCTGAACAA---TCGTCTT-TGGAGAAGACCAGAGTGTAACTCTAGG-----GAGCAGTG---TAGGGCAGAAGGTGTAATTGACACTTAGGAAGAGTGACTAGAG-----AAGCCGTGGGGGCAGGGaggggtgctgtgtatcagatatcatgaatatcagatatttacgttgcgatttgtaacagtagcaaaattacagttataaaaaaaaaatcaatgaaaatgattttatggttgggggtcactgcaacacgagcaactgtaaggttgcagcagtaggaaggtttagagcccctgGACTAGAGCTGAGAGTTCTTCTATCTGAAAGAGTAGAGCCAAAGGGTTGTGATTCCAAGCTGAAGGAGGCAGTTGATGAGGCGTGGCAATCGTTTTCCTGAGACAGAAATCTACATGCTTACTTCTTCCAAAAGCTAAGATC---------ATCTTCAACAGACAACTATAACCCAA----------TTCACAAAGGAAGTGCTT-GGAGTCCATCCCTAAGCATCCACATGTACATgtgcctgcgtgcgtgtgtgcg-------tgcgtgcgtccgtgcctgcgtgcgtgggtgGGCTGGGCAGCAGGCAAGGGGTTTCTCCCTCTGGGCTGTGCGCTTGGGTAGGGTCAAGCAGATGGGGAGGCAAAAGAAAAGAGCCAA-GCGAAGGGAGAA--------TTCAGAGACAGCGGAGCCTAGAGTCGCATGGCCACTCTTCTAGCTGTGGGTATATTGGAGTTTATCTTTCCCCTACAACACCCCAATCTGACTTAGGCCACTAGGACCGGAGTGTTCAGCAACCACGTCCACTTCCGGTTCTTTCCTTTGCTGAGAG--AGTGTCCCTATCCTGTGTTCTCAGCTCTGTACTCAGGCCTGGGGCTCTCCA-GTCTGCATCCCCACATGGCCACGGCCCTGGGACAAGGAGCGGCTGGGGAGCCCCCCTGGGGGCTGAGTTCTGGAAGCCTCTGAGCCCAGGTTTGCATTCTTTTCCGGCAGCAAGACTGG-CCCCTCCTGCAGTTTGAGTCACGTCCTGGTCTCCAGGGAGGA-GATGGGCTGCTT------------------------------TTCTGCCGGAGGCACTGAAGAAAGCCAGACT------GAG---------------------------------------------------------TGTTTTCTTGTTTGTCTTTATCC--ACAAGATTTAAAATTCCCAGACAGCATAATGACACTGAAAAGAGAAAGGAGC----AGAAA------TCACAGTT---GCTCTGTCACCGCCTGCTCCGTGATGCTGGCAAGTTGTTTAACTCCCCGGAGCTGCTTCTG
s HiC_scaffold_1 111771706 2151 - 233722169 TTTCAAGATATCCTTACGTGGACCAGACCCAGACTTCTTCCTATTCAGCTTGTGTTTCATACTTGGGAATTCTACAGCGTCTGAGTCTGGGGAATCATT------------------------TTACTGATGGCTTAGAAAAGGAAGATAATTTGCATC---------AGCTAGCTGGTGATGGTTTAGATTAAAACCTTGAGTTTGTCACACCCATGGCAGTGGTATTTCCATCTCCTCAGACTGCCTCCAAATTACTCATTCTCCAGATCTATCCTGTAAAACTTTGCCCCTGGCCTAGTGATGTGGGGCCTTTGGACAGAAGCCAGTGCTTCA-AGGAGCAGCGGG----AGAAGGCA-CACCTGGGGAGGTGGGGGAGGGACCAGCACCGCCACTTAATTGTATTCATTTCAATGGG-ACCAAATGGAATCA--GCCACATTAACATAGTTAGTGCACCTCTGAGTCGTCTAAACCAGCCCTGAATACTAACCAGGGAGCCTAGATGGAGCTAAAAATAACTGGCTAATCACCACCAGGAAGCATTAACAAGGActccaaagaaaggaaaatgtcttAATATTCCATCTCTCCAGCAGCTGCACTCCAGC----TGGGACTGAAGTCTCCTCCCAGCTTCCATCGGGCAGCTAATTAGGCAGGACAGAAGCTC-AGCACTTAGAGGAACTG--------AGGACCTGCCTAAGCTTCCAGGGAGTAAATGGAACAGGGTTACATGGGGTGAGGTGAGTTGGAAATTATCGATGAAGCCAAAAGAAATGAACCGCAGCAGAAGACAGGctttaaagaataaagaagtCA-------TCACAGTTCACAGTTCTCCTTGTAGAAAGTAAAATCCTTA---TAGAGAAAcatcatttgatttttctctg--cAACTCCCCC-------TGAAAGGTTTCTCT------------GGTGTCTCCAGCTGAAAGTATCCCTGGGGGCCACACCCTGGGGCCATATT-GAAACAAGTTCTCCCTGGCAGCCTCCATCTTATTACAAGGACCAGGGCAGACCCACAGAAACCTGAGCACTGAGACAGAGTATAGCATGTGGTCACAGCATGAAAAGTGTGACAGGTGTTATTCATTCATAGGACCTGGAAGAG------------------CAGGAATAAGAGATGACTA--TTTCCAATTGAAATAG-------------GTTAgtgcaaagaaataaagaaatattctttCGTAGAGCAAGGT---------ATGATCAGTTTAAA-----------TATGAATATGAACAGCTGCTAGTGAAGAA------------CTATTTAGGAGCATATCCCTAACCATTTG---GTTCAACCT---------ATTTGGCTA--TGTGCTCATGATTCTTC-----CTGTAATCTGTGTGCTT------------GGTGAGGGTCTGTGGCAGAATGATCAATAAAGCGGTATAAGGGAAAGATGGAGCGTTAGAAGAGTATGGACTTCGGGGTTCAGTGCTGTGCA---ACAT-------TCCCTAACAGGATGTGTTCGGCAAAATTACCTAGATCTCTAGATTCGTGCACGCACGAAT---------GCCGGGGCATGTCTTTCTTTGGGTTCTAAGACTGAA-ACAACCCAGCAGCTAGGAGGACACTTCACTTGTGCTAATGTGCAGTTCGAACATCACTCTCCTGCTACATTGAGAC--AGATGTGCACTGACA-------AGGTGTGGGCA-----------GTCTTTC-----TAGCACACAGATGTGACTAAAG-----AAGCCTTTAATGCTCAGCACTTACACCCACTTCCCATCCAGCCCTTC-CTGAGAAGCAGGGTCTCC-tcctttttcct------tgtgttccagCCCCGGGATATTGGTGGCTGGATCCAC-CACTGCCATGGCCCATGGGAAGGGTGCTGTTGGAGAGCAGC---GGGGGCTGATTTCTGAAAGTCTTACTGTCTCCGTTTGTGTTGTTTTCCCACAGCCAGAAAGGCCCCCTCCTGATGCATGAGTCACACTGTAGTCCCCAGGGATGAGGGCCGGCTGCATTCTGAGAAGAAAGGCTGTGAGCCCAGAGGATTCTGCCTGAGGCATGAAAGACAGCCAGATTCACTCAGAGGTACAAACAGTCCATTGGCACTGGACTTGTGTcgatcccaccccaccccatcaaTACTGGTTTGCTGTTTGGGTTTTGCCTGGCGTTATTCAAAAGCCCCAGACAACATTGTGACGCTG-AAAGAGAAAAGAGTAATGAGAAAATCCCGTTACATTTGCAGCTGTGTCACTTAGCAGCGTATGATGCCAGCAAACAATTTAACCACTCAGAGCTTTATCTG

a score=6811
s chr3           101714765 1029 + 160039680 GTGCAAAGTTATTTACCCTCTTCCTTGCTTGCTTTTTCTCGCAAACACGCTGGTGGTTTTATCTTCTAGGTGGGGCAG-GTCAGAACATTCTGTCTCAGCAGGATGCCTCTTTTTGGAGAGAGTTCAAAA--AGTGCTGCCCGAGTTACCTAGAGGACAGAGCATCTGGGGTGGGAGCAGTAGAAACCCAGGTTCTAGCCCTAGCCGGCTGTTGCGTTCTTGGAGGGAGGCTGG---------AGCTGAGTAGCACTGGGCAGGTGGCAGTCCCTG--------GTGCAGAGTCCTGCTTTTGGACTTGATGAAA----CCAGATCCAGTAGACTTGCCATTTACCAAGCccaggtatcgaggatgcaaacctgggaatcccagcactcaggaagtcagggaaagagttcaaggtcactgtcagctaagaattccaggcagcctgaactattgggaagctgtctgcaactatctaaataataaaaGACAACAGCAGCAAAGGGTTTTTGTTTGTTTCTTTGTTttccttccttccttccttccttccttccttccttcctttcttACTAACATGAGTGTTTTTACATCAGTCTTTTCATTGGGGCGTTTAAAAGCGCAGATGAggggttggagagatggttaagggcaccagctgttgctctcccagaggtggtgagttcaattcccagcactcacataggggctcacaagggtctataatgggatctgatactctcttctggtgtgCAGATGTACAGGTAGACAGCAGAGG---GTCTATGT----TCCCATCCTTGTGGCTTAAATGGAGCAAAGCAAGAGAAATAGCTTTCTTTAAATGGCCTTCCCTCACAGTGGCACTTCCTCTGATGCCCTGAACAGATGGCTCT--CTCCTATGCACCTGCTGGCTGCTCCCA---CAACTACTGAAGATGAACCTCCTGCTGGCTGGACCTCCAAACCCAGGCAGAAATGAATTCTCATCATCATCCCTAATCATGTGttccttcctcctttccctcccttcctc---ctttccctcccttcctcctctccttacttccA
s HiC_scaffold_1 111780027  917 - 233722169 GTGCAAACTTACCTTCCCACG--CTTGATTGCTGCTTCTCTCAAATATATTGGCTGTCTTACCTT-TGGGTGTGGCAGCGTTGGAACATTCTGTCTTGGCAGGCTACCTCCTTTTGGAGTGAGTTCAGAAGGAGTGCCCTTCAATGGTCACAGCAAACTGAAC--CTGAGTTTGGCGCTGTCAAAGGCTAGG---------------------GAAGTTTTGGAAGGAGCCTGGGTTCACATAAGTTGTCCAGGAATCCACA-GTCACAGGGCCTGAAGGGGGTGTACCAAATCCTG--TTTGGGCTTGCTGAAAAGGGCCATTTAAGGTAGAGTTGGCATTTG-TAGGTTCTTGT--------TGTAAACC----AGTTTCCACACACCG------------------------TTCTGTT---------TATCAGGTAGTTAAAAGCAGAGACAAGCTGCTT-----TAT---GGTAATGAAGGA-AATTGCCCCATA-GACTGTTGCTTG--TCTTCATTTGTCTTCCCTTTGGCAATTC----------------------ACT-GTAGGAGTTTCCAGGCTCCAG----------AGAAGGTTTTAGATCCCAGAGAGTGAGTCTCACAACTGGACAGTGG--------------TTTCCTcagctttcaaaataaattttaacccCTCCCCTTTCTGCCTGC--TGGTACTGCATGTAGCTTGTT--TTTTTTTCGGT-TTCAATGGGAAAGACTGTTACCTAAAACTTGCCAATGCCATATCTCATCTTTGCAGCTCAAATTAAACAAATCATGAGGTGTGACTTGCTGAAAGTGACCTGCCCTCACACCTGTGCTTTTGCTCATGCCCTGAGCAGTTGACTCTGGCTGCTGCTTGCATGTCTGCAGGCTCCAGTCCCACTATGGGGGATGCAGC-----CTGCCTAG---TCCACAGC---ACATAGAAGAGTCCCTATTTGGCTTCCT-attgcttgctctctctctctctctctctctctctctctctctctctctctctctctgtctctgtctccca

a score=27000
s chr3           101722390 1625 + 160039680 tcttataaaacttggcaagctagaggggtggggggaacccagttccttaatcttttaaagcatatctgtcaaaactcaacgacgaatatctaacagcactgagggatttaaaatcattctttca--tttatgatcaagcccatggctattttt---tttaacttgctgagtactagaaagcttatgtagtgcattaacacaaga----------aaagattaagataaaaagaaataaagctattattattcataggaaatattattacctacacaa---aaatgcagaggggatgcatataaagattgtgagcactaat-aaAAATACTCTTCCTTGTTGCTAGATCAATGTGCA----CATATTGCATTCCAGAATGTTTGCAATGATTAGAAAGATAATAAAACACCACCTTTAGCAGCAACAAAATCTGTAAGGTTCCTGGAATAAAATCCACAAAAGAGACAT---GTATTAGACTATTATGAAAGAATAAAACCCAGAATTTATTGAAAAACATAAAAGA---CAAAACTAAATGAAGAACTAAAGAAGACGATGAATTGACTTAGATTCTTATAAAAGTTCCAACATTTCTCAGATGAAGCTGTGAATTCTATATGAGAAGCAA--GAGAAGGCTCAACACAGAGTACCTTAGTACTCCACATAATGCTATATTAATGAAGACTTCAAAAGCATTGGGTAAACGA-Ggcttctcgaact-tcacattcctctgaatcccatgggaatcttgttaatcacggattctggttaagaaagtctgga---tcaaagcttgagtttgctaatgacctgatgctggcacagctggtccatgcgacacactcagagATGATTACTAGGTAGTAAATA---AAAAGAACAG-ACTAGCGAGCCCAGAAATGAGTTTATATACTTATAAAAGCTTCCGGAGTAAGAATGCATGGCAGGT---TAGTATGGAAAGTGAAGTATGTGAGAAATTGTGTTGAACTAATGT---------aaagaggcagacagagacacacagagacacagacaggagagggagaatagggagggaggaaagagagaagagaaaggagagaggagatggaggagacagagatagagagactgagacagagacagagagactgagacacacacatgaaaaacagagagagagtgagagagagagagagagagagagagggagagggagagaggggg-----ggggagggagaaagggagggagagaacgaacatggttccactcactccctgg----tgctgc---------ccactg-------aatcatcttgggcccctgactgctaagactataggagaatgaatttactgttttaagttcctgagcttgtggctatt--tattggtttagagccttaggaaacaagtacCCCACATGAGAAAGGACGCCACAAGACTAAATGAAAAGATTAAACTACAGATTGGAAG---AATTTTTCCAAGTATATAGCTGCTAAAAGATTCAA--AGTCAAATTACAAGATGAAATGCAGGTATCCAACAATGAAACAAGTGACTTCTAGACCAGCAAAAGGATAT---GACAGTTCGCAGGAGAGAATGCCTTACTGTCAAGAGCCAGCAGAAAAGAC-CACAAGCTCACTAACCATTTCGGAA--GCCCACTAGAAC---AGCGAGGTACCAATTTTTATCCATCACAACTGAGA
s HiC_scaffold_1 111782710 1517 - 233722169 ttttataaaacttagTAAACT-------TTCAGAAAATAGAGTTCTTAAATCTTATAAGGTACACCCATCAAACATCTATTGCAAATTtctaata---tttagaaatttacaACTCTTCTTTTAAGCTTAGGATCAAGATCATCATTGTTTTACTATTTATCATT----ATACTAGAAATTCTAGCTAGTGGattaatataaagtataaaagttaagaaacaagaaaagaagaactAAAGCTATTATCATTCACAGGCAATATTATTGCCTACAAAAGAGAAATGGCCAAGGGAATC-TAGGAGGACAATTAGTACTAATTAAAAATGTTCTACAAGGTTACCAGATAAATATGCAAATTCATATTGTATCCCAGTGTATCTGCAGCAATTAGAAAGATAGCAGAACATACCATTTAACAGCAAGAAAATCTGAACGTTCTATAG----ACACCCACAAGAAAGATATACAGTACAAGATCTCCATGGAAAAGTTA---CCAGAGCTTAtcgaaaaacacaaaaaaaatctaaacaagaGAAGAAACATAACAAGCTGATAAAttgatttaaattattataaagtTTCTAATTCTTGACAAGTTAAA---------CTACATGAagagaaaccaagaaga--aaataCGACTTACAAGAATATGTAATATAAAGCTGGAGTCACTGAGATTTCAAGGGTACTGGTTAAACTAGGGCTTCTCAAAGTGTCACACCTATATGAATCTGATGGGAAATTTGCCCACTATAGATTGTGATTCAGAAGAGCAGGAGTGTCAATAGTCCTAATAGGTACAGA--TGATGCTGGTACAGCT-TTCCATGGACCTTGTTCAAGAA-----ACAAGAgagtaaataagtaaaagaatagaaatagagAGCCCAGAAGAAAATTTGCACATTTACAAAAGCTT--------GGTATATAATGAAGATACCTAGTA--GAAAGCAAGGTGTGTAATAAATTGGGCTGATCCAATGTCCTTACTAAAAGGAGGCAG-CAGTGTCCGA-----------------------------------------------------------------------GTGACAAATATGAAGATTCT------------------CTGTGGCTGACTTTT--------------AAGTTGGAG---------------GAGAGGCCACAAGTCAGTGCAGATTCTTGGGGCTAGAAAAGGCCAGG--------AAACTGATTTCCAAACCCACCTCAGAGTCTGCTGCAGGAACACACCTCTGAGAGTAAAGTCATTTTGAGTTTCTGAGCTCCAGAACTGACAGATGATATGTTTGCTGCTTTAAGTCACTATGTTTATAGTAATTGGTAATAGT----AGCATCAGGGAACTAACAGTTCAGGTAACAATAGGCACcagaaaacaagatgaaaaga-TAAGCCAAACATTAGAAGAAAAATTTAGCAAAGCATG-AACTGACAAAggattcaaataaaaaaaatataaagagaaacacagat---cagaaataagacaagtgATTT-------ACTAGAAGGATATCTACAGAATCCACAGAGGCAAAAGCTCTATGGTCAGAAGT------AAAAGATGCACAGTCTCA-TAATAATCTTGAAAATGTGAACTAGGGCCATAGTGAGATGCCATTTTAAACtcatcaaaatttaaa

a score=29544
s chr3           101727719 1877 + 160039680 CATGTTTTGGACAATTCCCGAGAAGATGGGAAGCTGCAGAAAGAGAAAAGGCACAGTTCCTGACAGCCACTACCACCCTCCCT-TCTGCTCTCCAGACCCATGTGTGGTTGACTCCCACCCACCTGACTGTAGA-------------------CTTATTGCCTGTGCCCTTCCTGTGCCCATTTTCCAATCTCTGCTT----CTCTCATCTGTCCCCTGCTCCCTCTCCTGCACCCTGTCCTCTCAGC-----------CTGTGTCTGCAGGCTCTTAACCACATTCCCAAAGCATGTGATCCCT--GTAAAGTTTGGGAA-------GTTGAGGCTGTGGGAGCAATAGTGAACTTCAGGTTGGTTCATGTTAGTGACTCCATTTCCTTGG--ACGGACCATAAGATCCCTGGGAAGGAAAAGAAGTAGA-----AGAAAATCAAACTCTgccagtcagtggtggcacgtctttagtccttgcctcccct------caagag------gtagaggcaggtagatctctaagttcaaggccagcctggtctacatatgagtttcaggatatccaaggctacacaaagaaaccttg--tcttgaaaacaaaacaaaacaaaacaagacaaaaATCAAACCTTTAATACCCAGCAGACCCATCATATTCTTAAGAAAATCTTCTGGAATGTTTGGAGCACTGAGTTCTCGGCTGCAAACTCTATGCACCGTGGCACTGGGAAAGAGAGTGTACAGTCCCTTCCTGCAGATTTCCTAGCTCAGTGCCTCCAAGATAGTGCTTGCTCCATTAATGTTT-CATAATGATAAAAGTAGCTTGTCTTTTGGCCAGCACGTTCATTAAATAGAATTTGTATGCATTTTCCATTAAAGCTTCAATTCCTCCAAGTTTAAAATAGAATTGGAAATTTGCTGTGTTTGAAATATTTTGGTTCCATTAGCATAATCTATCAAGTTA-GGAAATTAGGAGCAATGAGAGCAAAGAAGGTCCCGCCCACACAGTCTCAGGCATGGAGTCAGGCAAAGGCGTCA--AAGGGTGTGAGGTCCCA----CAGTTGA--GGACTTAGAATGACTTAGAGGTCATGGCAGGAAGGAGCAAAGGCAAGCACCATCTCTTTCTGTTGTTGTTTCTTTATGGTAGGGGTCACACCCATGCCCTAGATTTTAGGCAAGCATTCTCCCCACAAGCTTCACCTATAGCCCTTTATAGCCTGGTGAGAAGAGCTCAGACTTCCTTGGGGCAACCTAGACTTGCTCTCCATGGACTGGAGACTGCTGCCTATGGACTGGGAATCTGGATCAAACC-------------AGCCTCAGTTTCCT---------------------CCTCACTGAGGTAGCAGCATTAGTTCTGAGGAGTTAGCACACATGAATGCAGTTTATGTAGAACTAAGCCAGCAAGGCATTTGCAATGATCTGAATGGCCGAGCTACTGGTAGGGTTTTGATTCTGT-------------CCTCAGTCTGAAAGACAGGATTGTATGAAAGCACCTGAAAATACTTTAGAGGCAGGCGTCATCCCTGCATTTCCCTTCCTCACACCTGCTACAATGGCATCTTACATGCAGCAGCTGCTGAGCTGACGCAATGAATGAATGACAAATGAAGGAATCTGACCCATAACTGCTTCAGCCATGATCTTTGAATAGTCATAATGATTACATCAGGTTCCTGACTCTCTTCTTGGGATATCCTTGGGTTGGACCCATCCCAAAACAGCCAT----AGGCTGAAGGAGAGGGGGTCCTAGGAGAGGCTAGGAGAGGGGCAAGCATGTGGGACAGAGAACAGGGTAGCTATC----------AAGAAGAACCCCCCCGCCCCCAAGTCATGATTTTTCTGGTCACCAAAGGCCTGGGCTAGAGCAGAAAGATC-------------AGGTCAAACAGGGAGAACAGGGAAGGATGTGAT-ATCTGATGGTGATAACAGAAGTGATCTT--GACGACTAAA
s HiC_scaffold_1 111788454 1748 - 233722169 catgtttttaaagaatGCAAGGAAGACAGGAAGCCACTCAAAGAGGGGAGGCACATTCCCTGACACCTCCCGCTACCCTCCTTGTCTGCCCTCTAAAACCCTAATCGCTTGGC-CCTACCCATGTGGCTGTGCATCTGCACCACACCCTCTCACGTGTACCCTGTCCTTTTCCTGTACTTGCTCTCTCACCTATGCCCTGGCCTCTTACCTGTTCCTCATTCTGTTGCCCATTCCCCACCCTCTGAATTGTGTCCCTCACTGTGTCTGTATCATCTTA-CCACCCTCCCAGAG-GTGTTATTCTTTTGCAAAGTTCAGGAAAAATGAGGCTGATGCAGTGGTACTTGTAGTTAATCTCCAGTCAATTTATGTTAGTGTCTTTACCTCTCCAGCTGTGAAATGTAAGCTCCCGGGGAAGGAGAGAAGCTAATTTATTCAAAACTCAGACTCTA------------AACACATGTTTACTTATCTAATCCATTATGTCACAAGAACTTTGAGAACAGTTCTGttcatgttcatttttaaaatcag-------------taagtGCCAGGA--------GCTTTGCA-------CTTGGTTTCTGACAGCAAGG----------------------------------ATTCAACAGAGC-------TCTTTAA---------------------------TTGACTCTTAACTCCAAACTTT---TAGTTAGACACTGGGGCAGCAACCGTACCATCGCCTCCTGTGCATTTCCCAGTT-AGTTCCTCCAAGATCCTAAGTGCTGAGTAAGGGTTTGTACAGTGATGAA----GTTTATTCTTCTGCCAGTATGTTCATTAAGTAGTCTGtgtatttattt-ccattaaaGCTTCATCTCCCCAAAGCTTAAAATAGAATTGAAAATCTGCCATGTTTGACCTATTTTCATCTTAAT-GCATAATTTATCAAATTACAGAACTGAGAAACATCAAGGGTGAAGAAGTGCCAGCTGGAGCCATCTCAGG-GTGGGACTGGCCAGAGATACTATGAAAAATGCAGGGTCCCAGGAGCAGTGGAAGAGACTGAAAATGGCTTCAAATTCAaggcagaaaagagcaaaaccaaaTAACATCTCT---------------------------------------------------------------------------------------TTTGTGGCCATCTGGAAAGAACTCAGACTCCATGGAGGCAACCTGAACTTGGCCTCT---GGCT-----CTGCTTCGTACTGCCTGGAAATCTAGGTCAAACCAACTTACaacctgagcctcagtttctctgaaaACAGTGCTGCTGCTAACCTCACTCGAGTGTCAGAACCAGTATTAAGGAGATAATGGATATGGACAGGGctt-tatagaaataaaacagcAAGGCAATGACAGTGGTTCGGTTGGTTGCTCTATTGACATGACCTTGTCTTTACTTTGCATTAAATATCTCAGTCTGAAAGAC------GTTTTGAAATGGTTTTAAACACTTTTGAGGCCAGGATCAACTCTACATTTCCCTACCTCCTAAGACCTAAAAGATCA-CTCATACATGGCAGGTGCTTGAC--ATCTGATGAATGAAGGGCAAATCAATGACTTTGGTTTATAGTT-------------TCCAAGAACAGGAGCAATGATTATATCAGCTTCCTGATTCAC-TCTCAAGGGATCCTTGGGTGCCACCCATTCAACAGAAATCATGTTGAGACTGACAATGGGTGG-----AGGAGTTCCTAGGAATGGGACAAGTATGGGG----------AGGGTACTTGTCAGCCCCAGGAAAAAAGAG-------ACCTCGAATTCATGTCTTT----------GAAGACCTAAG-------AGAAACAGCCATGGTGTTATTAAGTGAAAACAGTGAgagtagggaaaaataaaataatctgatCATAAGTG-AAAGGTGGTCTCCAAACtactaaa

a score=4225
s chr3           101730301 132 + 160039680 TTTCAGCCGTAGCGCTCAGTTGCTTTTGATGGCAAAAAGCATTGCTTAGAATCAGGATGAGAAGATTTGGTGGTTACAGAAGAAAGCTGGAATGGATTCTTATAGTGTGTTGAATCACAATCCTgagagaga
s HiC_scaffold_1 111790345 131 - 233722169 TTTCAATTGCAAGTCTTGATTGCTCTTGGCATCTAAA-GCACTGTTAAAAGTCAGGATGAGATGATTTGGTACAAGCAGGATAACACTGAGGTCAGTTCTTGTAGTGACTTGAATGATGGTACTCaaaaaaa

a score=6936
s chr3           101733156 199 + 160039680 atcccaaagtA------TTTATGAAAAACACTAGTTTATTCCTCTCACACATGTATATATTTAGGATTAGTAGTG-GGTGGCAGGGAGCTTTGCTATGATCCCAGGTTCTTTCCATCTTGTTGCTCTTCTACCCCTTGGGTATGGTATTTGTCTACCACATCTGCTTTCTAGGCCATAGGAAGGA-AAAGAGTAAACAGGAAAACTT
s HiC_scaffold_1 111792432 199 - 233722169 atctcaaaatagaatcatttaagaaaaatagtagtTTATTTGTCTCACACAAATAAGTGTGTGGGATGAGCCTTCCAGGGGCGGGGATCTTTACTG--------AGTCCCTTCTGTCTTGTTGCTCTGCTATTCTTAGAGTACGGTACGTATCTGTTGTATCCTCTTTCCAGAACATGGGAAGCAGAAAGAGCAAAGGGGACAAATT

a score=17327
s chr3           101743974 721 + 160039680 cgcatcttctgggtgactctaactcatccacttcacttagcagtgaagattgaccatcaTTATCCCTGATCATCTCTGGGGCTGGTGGCCCTTGGGCTGTGCAGTGTCTAGCTCCATGTGGTCCTCTCCAGGGCAGTCCTCAGGAAAGCTTCCTTCTCTCC---------CAGTCGGAAAACAACCCCAAAGACAGCCAATGTGAGCCAATGTGATAAGAGATGCTCTGCTTTCCCTGGCAAATCCCTTTGAAAATGCCTCTCCGTGCAGTGTTTTTGGCACAAGCATCCAGAAAAGGGTTATAATAATCATCAGCCTGAAGCCTTAAATACAGTCTTAGGTTCTGCAAATACCATAATGACAGACTTGAGTTCTCAGTATGAGGCATGATTGTGGGCACCGACGCTTAGCAATGTCCTGGGCATGGAAGCAAGTGTGAGTCTTATTTATGTCTGGGATCCAGAAAGAAAATGAGGATATTAAAGGCCAAATGATACAGTGCTCTCACAGAGCAGAAAAGCATCTCCATGAGGCAT-TTCTG---------GGAGGAGAATACATCCATGTGGGTCCCTCAGTGCACAAGGCTGCAGGGCCTGTGTGTCAATGTGA----CAGCAAGA-TGCATCTGAG----TTAGTTGCCTAAAGTGGAGTCAGAGATGAGGCTAGAGCA---AATGGGTGGAGCCTCCTTGGGTCCATGATGGACTATAGTTAAAAAACGTTTGTGGCTGTTGATGAAA
s HiC_scaffold_1 111801299 702 - 233722169 CACTTCCCCTGGGTGACATCAGGCCTGCCACAGGACTCGGCCCCAAGG---TACCATTCCCATC----ACCACCTCTGAGGCAGGCAGCTCCTGTGCTGCAGATTGCAGCCCTGCACGAATTC-------------GCCTTGGGGAAACTCGCTTCTCCCCACAATGCTACAGCTTGAAACCAACCCAAAACACTGCC---------TTATGTGATCAGATACATTCTGCCTTTTCTGGCAAATTTCCTTGCAAGAGACTATTCATGTAGT--TGTTGGCATTAGAGTCCAGGAAAAGGTTATAATAAGCATTATTCTGAAGCCTTAATTACAGTCTTTGGCTCTGCAGATGCCACAATGACAGTTTTGTATTCTCAGTGCTGGGAAATTTTGTGGGCACTGGAGCTTAGAAATGTCCT-AGCTTGCAAGCAAGGTTCATTCTTATTTGTGTCTGggacttaaaaagaaaatgggaagttTGAGAGCTAGTTTACTTCCCAGTCTCA-GGAGCAAAACG-----TCCACAAAGCATGTTGTGCTCAGAAGAGAAGTGGAATACA-CCTCAGGAGTTCCTTGGTGCA-----CTCCAAGCCATGGGATTCATAACGAACAGCACCAGGACTGCGTTTTAGTAAATGAGTGACCTAAAGCAAAAGCAAAGTCAAGGCCTAAGCAGTGAAATGAAGGGGCCTCT-----CCCACAATGAACAGT-GTTTAGACGTGCTCATGGTTACTGCTGAAA

a score=16395
s chr3           101747966 678 + 160039680 GTGTGCTCATCGCAGTGTCTTCTCTCGTCTACA-GGTCATGCCATGAAGTAGGGAGACCCTGAGGGAGAAGCAAGATGAACCAGGC--TGACACATGTC-TTTGTGGAAGTCAGAGTCCACTG-GGGACAAAGAGCCCACCCTGGAGAGAATGCAACTGATTCACAAAGCTGTGTGCTTGGCTTC----CTCATGCACATCACAGGTTATCCATTTA-GGATCTGGGTGGGTGG-CTCAGGATG------CAGTGATGGAGAAA-TGTTTGTCACATGTAAAGGCCTGGATCACCTGGTGGGCAAATAGAGA---GCAAAAAGCACAGGGTTTGGTCAACATTGCCAACAG----GCCAAGGATAACCACAGACAAGCCTCTAATCCCCTTTGTTCCTTGATCTAACCGAGAGAGTGCCAAGGTCTCCACCCTTGCTCTCCTTCCTGCCCCACCCACC-TACTGTGCC-GCAGCCTTTTTCTAACAGCAGTGGGTAGCAACGCCCTTCAAAAACTCAGGGGACATTCTTCCTTTGTCAGAGTGTCACGCTCATACCAGCTTAGGTTGTCCCCATTTAAGACTTTATTCTTCTAGTTGTGAGTCACTGCTGCCATCCTGTC---TGTCTTATTCCTGCTGGGAAAGAAGAGTAGG---------GGAGCGGTGGAA--------CACCGAGGCTGAGAGGAATGCCAGAGGCTGAGGTGGTTCCTT
s HiC_scaffold_1 111804591 707 - 233722169 GTCTGATTGTTCCTGTACTTTCTCTTGGCCATTTAGACATGCCCTGAAATGGAGCAGACcttagggaagagccagaggaagcagagagtgacACACACCATCTGT-----------TCCATGGCAGGAGTGAGAAGCTGCCCTGGACAGAACCCAGCTGCCTCACAAAGCC-TGTGCTTGGCCAGGCAGCCCACACGCTGCACAGGTGAAACGGTTAAGGAGCTTGGTGGGGAGTCTTTAGATGTCTAGCCCGTGATGCAGAAAACGTCTCTCCTACATGAAGGCCAGGTTCGTCtgccaaataaaaatagaagtgaaCAAAAATTGAGATTTGCCTAATATTGCAGAAAGCTTCTTCAGTTATAGCTACAGACAAATCTCTGATCCCCTTTGTTCCCCTTTTCACCTTGGAAAATGCCC-TGTCTCCTGGGTAACTCTCCTTCCAGCCCTCTGCACCCTGCTGTGCCTGCCACCTTTGTCTTATAGCAGTGAGTGGCCACGCCCTCTAAAAGTTCTGGGGACATTCTTCCATTGTC--AGTGTCCTGC-CACTGCAG-TCAGGCAGCCCCCactcaagattttatttttctcttgatgaGTCACTGTGGCCATCTTGCTGGGCGGCTGCTTCCTGCAGAGAGACAAGGGAAGGAACCGGAAAGGAGGGGCAGGAATCATACCCACAAGGGCCTGGGAGGGTCACACAGGCTGC-ATGGTCCCCT

a score=26479
s chr3           101749263 1141 + 160039680 TTCTCCTAAAAGGAGAATGAGTGTCTCTAAACAAGCAAGTATCCTCAAACAGGCTGGGCAAAGTGccaccatgccaccaccatgtcaccaccatgcACACAAACACCATGCACCCAGAGGGGA--------------ACAGGGACAAGTGGGAGAGAACTTGGGCGAC--------------CCCTGTATGAAGGGTGGGGAAGGGGAGGGAACATACTCATCTATTCCACTCAACACTGTGCTTACAATGATTTATT---------CCACATCTCAGACTCAAGACAAGAATTTAAATCCCACTTAAAGGCAACTTTTCTCATGATTCAGCTCCATAATCATCAT-CAATATTTAT--CGGCTCAGGCCTGCTTCCAGACATCATAGATCTCCGTCAGTCTGGAAAGCCGAAGGATTAGAGGGGCCACTgagagagagggggggggagggagggagggagggagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaCTCCAGGCTCCCAAGGGACAGCTACAGCAAAGGGAGCAGCAAGCCCTGTGCACTAGGTCTAGCAAGGGCCCGGCGACATTCAGAACATGAGGACATTTAGATTCAATGAAGGGAGATGATGTTTTGTTCTCAGTGAGAATGAGATACGCAAGAGGGAGTTGAGTGTGACCATAAAATGAATGCAGGAAAAGTTTCAGGCAAGTTCATGGTTGCCTGAGCTCTGGGAGAGG--CACTATGACCCTCTGAGATTGCCTCGAGGAGGGTCACCTGACATGTTGCAGAAATCAAAAGAAGGAGAACCCTGTATCCTCAGGCCTTGGGTTCTGGCCCCATGACTGGCTAGTCATGTGACAATGG-TTTGCCCTTGGTTCCTGCTCACGTTTGTGATTTTCCAGTGCTGTTA---ATCTGAGCT-GGAGGAGGCATTCCCAGAGAAAAGGGCTTTT-----CAGCAGGAAAATGGGCTCTCAGGCAGCTGGGCTTTACTTGCCCCAAACCCCAAATATCTATACCTCCTCCA----GCAGCAAATGCA------CAGGGAACATTTTCAATGAA---GAGT----------------TAATTGTGGTTTCCACCCTGAACAGCTTTGTGCATTTGTAATGGGACTTGGAAAAAGAAGCAGTAACAGTGTTAGAAATTCAATGGCTGAGCCCtgt
s HiC_scaffold_1 111805444 1068 - 233722169 tcttcttaataGGAGTGCAATCATCCCTGTACAAATAG---TCCTCAACC----TCAGCAGAGTGC---------ACAACCATCCCACAA--------AGGCAGGCTGTGTGCACAGAGGAGAGTTCAGGCTCACAAACAGGAACAAATGGAGAAGCATCTAGG-GACAAATGGTTACACAGCCCTCCCTGAGGGGGACCCAAGTG---------CACTCATTTGTTTCACTCACCGCTCTGCCTGTAGTGATTTATTGGCTCATTCTCACATCTCAGACTCATGGCAAGAATTTAAGTCCCATTTAA-GGCAGCTCTTCTCATGATTCAGCTCAATAATCACTGTTCAATATTTATGACATTCAAGGCGTCTTTCCAGACACCATATATTTACTTCAGTCTGGAAAGCTGAAGGCTGAGAGGTGCTGCTT-------------------------------------------------------------------------GAGATGTCACAAAAGTAACAAAGGGAGCAAGTTCTTGTTCTCA--------TTAT-------------------CCTGTTCG--AGGTTGAGGAAAGACTCGGTGACCTCC-GAGCCAAAGGACTTTCAGGTTTAATGAAAGCAAATACTATTTGCTTCT-AGTCAGGACTCATTAGCTAAGAGAAGGTTGAGTGTGACCGAAGAAAGAATGCATACAAAGTTTCAGGCAAATTCATGGTTGACTGGCCTCTGTGTGGGGTCCCCCATGACTCTCTGAGAGTGCCACCAGGAAGGTTGGTTGGCA-ATTTCTGAGGCTTACAGAAAGAGAA-----TGGCCTCTGGCTTTGGGTTCTGG-CCCATG--TAGCAATTCACATGAGCATGGATTTTTCCTTGCAGAGTTCTTAGATTTGTGATTTTCCAGTGCTGTTAATCATCTGAATTGGGGGGAGACAATTCTGAATAAAGGGGCTTTTAGCAGAGGTAGGAAAAC---TTCCcaggtggat--tttttttctgcttaaaacCCCAAAGGTGTGTACCCTTTCAAGAGTGCCGCAGTTTCACCAGAGCAGGAAGCATTTGCATTGGAAGTAAGTTGCTGGACCATCCCAATACCTGCAGTTTCCAGCCTGAACAG-TTTGTGCTTTAGCAATTAGATTCAGAAATAGCAACAGTGACAGTGTTAGAAATGTAGTTGCTGAGCTATGT

a score=8521
s chr3           101753837 426 + 160039680 AGGGTAGAGGGAAGCTCCTGG-TGACTATGGACCAGGCTTGCCTGAACATCATGTCCATGGGCTGAAGACATGACTTAGTGACTCTGGGCATCTCTGAGATGAAGATCTCCAGTGCATCTCTCTCCTGAGTGGTGC--ACCTGTCTGGGTTGTTGTCCTCCCACAGCAGGTATACAGAATCTTTCCTGTCTGCATTGTTGTCCCTGACAGCTGATGTACAGAAACTTTCCTATGTGGGTTGTTTTCCTCCACAGCTGTTGCACAGAATCTTTCTGCAATATTTTGTCATTGTCCTTCTAGAAACAT--TCTGGCTTCTTTTTTATACCGAATTTCCTGTTCCTGATATTTTTTCCCCGTTTCTTGGGAAAGATGGTGTGGGAAATGCATTTTGGAGAC------tttttaaaaatatttttattacatattttcctc
s HiC_scaffold_1 111811438 347 - 233722169 AGGGTAAAGAGAAGCATGGGGATGAATATGGACCACGTTTACCTGGGTATTCTGTCTGTGAGTTGGAAAGACAATACAGTGATTCCAGGCGTCTCAGAAATGGAAGGTTCCAGTATGTCTAGCTCCTGACTGGTATTGTCCAGTCTGGGTTGTTGTCCTC------------------------------------------------------------------------TGTGGTTAGTTT-----------------ACAATAtcattctgggattttttttcacTACCCTGCTGGAAACACCATTTATTTCTTCTCCTCTGTTGAAATTTCTGTGCTTGTTGTATGGCTCTC-TTTCTTGAGAAAAGTTGCCTAGGGAATACATTTTTGAGGCTATGTATGTCTAAAAGTGTCTTTAGTCGATCTTATACTC

a score=18501
s chr3           101757958 520 + 160039680 taaccagcaTGGTGTTCTTTTCTTT-TTCTCTCAGCACTCAGCCCCTAGCTACCTGTAAGACTCTCT---GAACACAGGTGAGCAGCTGCCCCAGAGCCTGGTTGCTCTCCAGACTGG-AGTCTTCTCCCAAGAGCTGATGTAGCCTTTGGCGGAGAGTCAGCCCTGCAGGTCATCGATTTCAATGGTTCAGCATCTT-------GGTCTTCTTATGGATCTGCCTCTTTCAGTTTAATTCTAACAACTTTCTTGGCACAAAGA-CTGGAGAGAGCATTGCCAAAGCCAATAACCAAGTTCCTGCCACCAAGGATGATTT-------TGGTTTCAGTGTTTCTGCAGGGAGCACG-------CTTTGGGCTGTGTTGTGTTCTGCCTTTAGTCTGTTTTCAGATAGGATAGTTCATATTAGGAAGTGTGAGCTGGATTCCCTTCCCCTGTTATGTA--TTTCATTGCCTTCTGATGCTTCGTGTTATTCCTTTTTTCCTCCCATGAACTTTTTACACCATTGTTTCAAGGATAAA-AATTGGGTAAGCAA
s HiC_scaffold_1 111813744 545 - 233722169 TAATGGGAAGGAcgttcttttccttcttcccacaGCACTCAGCCTGCAACCACCTAAAAG-CTCCCTCCAGAAACCAGATGAGCAGCTTCTGCAATGCCTGGTTGCTAGCCAGAGTGGTGGATTCCTCCCAGGAGCTGTTGTAGCCTTTGGCAGAAGATCAGTTCTGCGGGTCATTGATTTCAACTGCTCAGCATCTTTTTCTCAGCTCTCTTTGTGTATCTGCCTCTCTCGACTCAATTCTAATAACTTTATTGGCACAAAGAGTTGGAGAAACCATTGCCAAAGTCAATAATCAAGTTTCTGCAACCAAGTATGATTTATTTATCTAGTTTTTCAGTTGTTTCAGGGTGGATGAGAACTACATGGGGTTATATTGTGTTTTGTGTCTTGGTTATACTGTAGTAAGATAGTTCATTCTGGGAGATCTGAATCGTG-TCATTTCTCCATTTATGCAGCCTTAATATTATTCCACTTCTTCCTG--GTTTATAATTTGTTTCTAT-ATCTTTTTAGAATGTTTCCATAACGATGAACAATCAGGTAAGCAA

a score=7955
s chr3           101761725 297 + 160039680 TGGGTGGGTGGTAACACTGGAGAGGTCCTTCAACACCAGATCTTCTTGCTTTTGTTGGAG----AATTAGGCTGAGTCTTGCGAGCTTGAGGCACAGGAAGGATGTTGAATTAGAGGAGGGTACTTCGCAGAATCCTATTTTGACATGGTTTGGGTAGAGGACT-ATGGCTATAAAGGGGACAAGGACTATGTCCCTCTCCCACATTAC-----TGTAGCCAGTATGGTCCAGTCACAGTGTAGCATGGCATACTCCAGAACATGGAGAATGTTGAACAGCTGGCTTTTCTGGAACTGCTGAACCCC
s HiC_scaffold_1 111816558 306 - 233722169 TGGATGAGTTGGAA-ACTGATAAGGTCACTTAGCATCGGTTTCTCCAGCATCTGCTGGAGGAGGAATGAAGATAGAACCTGGGAGTTTCAGGGGTAAATAGAGCACGGAATCTGGGTGTTGCTTCTTGCAGGATCTTGTTTTAACACACATAAGATTGATCGTTGATGGCTCTGGGTGAGAGAAGGAACAGGACCCTCCATCACACTGCATCCCTGCAGCCTGCACAGTCCAATCACAGGACAGTGTGCCAAGCTCAGGAACACAGTGAATGCTGAGAAGCTGGCCTTCCTGGCAGTGCTGAGCTCC

a score=19672
s chr3           101766293 1228 + 160039680 ATGCTCACCTTCCAAAGTCTCAGACAGAAACTGCAGCCTGAACAAACCC----AGCTGCAGCCCTTCCTATGTGAGA--CAGAGTATTTTCTCAGTTCTGTGCAACAAAA-CCAACTCACCAAGTACAGTGGCCTGTGAGGTGGC-AGGAGCCCGTAGCAAGCACTGGCCTTCTGTATTATTAAATGCT-TGTATTCATTGAA-------------TTGCAGATAGGCTTAGTGACAAGAAAGCGTTACCAAACTAAACTTAGAAA-----TATTCC-CCACTGGTGTCCACAGTTGCTGTATTTGATGGACATAGACTTGTCTTTCTTGATCCGGGCAATGACCTCAGAAAACTCCTGCAGTTAGAATAAAACAAACATTAGAAAGGCAATTAAGAGC-AGTCAGAGGCATTCAGT-GCCCAAACAAAGAGGAGTCTGTCTGTCTGGCAATCACCAGAAGGCAGGAGGCGGATGGTGCTGGCGATGTCTGGCAACTCAGCAGGATTGAG---------GGCCAACAGCTCCTAGCCTTTAA------------------GAAAAGGTCAACAACACTGGTACAGCCAACATTGACCCCCTCCTGGCAAGAAAAGGAGGAAAGCAGGGAAGACAGGGACCCT---TCTGACCTGCCACAGAAACTC--------CTAGAGGCTTCTGTGCTCCTCATATTGGTCAGGCTAGCCAATAGTCAAGTG-----AAAGGGAAGCTGGGAAGGCTCTCAGATTCCC--AGTTTCACATAGAGGTGAATGTAAACAA-----GTCAGGAGAGGATGCCGAACCAGCA-----CA----AAGATGATAAAAGTTTTCCTTGC--------------TGCTCCTCATGTCC-AGGGTTAGAGCAG-TGCTTAAGTGCTCACTG-------TGTGCACCCAGCGC-TGTGCTATGA------------TTGGCTGT--AGGTTTTCCTGCCCT-------GAAGAATTTGCTAGATGAATTCCATAACCAATTTTTTT--CAGGGTTAAAATATCATGGGGGAATTCTTAGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtCCACACAAGAATTGAGTCTCTAAAGACACTTCAAACTCTAT--AGCTCTCTGGGTCCATATAAATAGTTATGAATAAAAGTCTTCC----------------------------------------------------------CAACCCCC-----------------------------------ACCTCCAGTGCCACGGTCAGCGATACATGGCGATCCAGATT------GCAGCATAAATGATTTCTGTATTGATTTGATATGGTGGAGGCAATGGGGATTGGCCTGTCAGCCCTTATTTTAAAGGGTGTCAGTGCCACAAGCTTAAGAAACAAGGGCGAGGTAt
s HiC_scaffold_1 111820604 1405 - 233722169 ATACTCCTCACACAAACTTTCTGACCTCAACTGTAGGGCAAAAGAACtcttatatttgtaatctttcatttgtgagaattaaaatttattttcaattctgtGCCACAAAAGCAAAATCAAGCAGCACACTGAATGATGACGTGATTAATAGATTGCAGCAG----TGGACTCCCTTGCTGTTAACTGCTACCTGTTCACTGAAACAACTCTTTCCCTTGGAGACCGACTTGATGACCCGAAAACGTTTTACACCTAAACTTATAAAGTAGATATTACACTAACGGTTCCCTCATTT-CTCCATTTGATGGACAGAGACTTGTCTGACCTGATTTGAACAATAAACTTAGTAAAGTTCAGCAGCTAGAATAAAGCGAATATTGGAAAAGCACTTAGGTGCAAGTAACAGAAATTCAGTGGCTCAAACAAAGAGGTATTTGTTTCTCCTG-----ACGAGAAGTCAGGAGGTAGATGGTGCAGTGGTGGCTTGGCAGCTCAACAATGTCAGGGCTTTGACAGGGCAATGTCTCTGAGTCTTTGGCCTTTCTGTAATGAGTGCAAAAAGCT----GATATAGGTACAGCCAGCACTGTCACCCTCCAGGCAATAAAAGAAGCAA---GGGAAACACCTGCTTCCTTTGTCTTTTCTATCAGGAAAGCCCGAGCTTCTATGGAGGCTTCC-TGCTGCCTTCATTGGCCAAGCTACCACATAGTCACTTACATGCAGGGAGAGTCTGGAAAATTATTTAGTTTCCCTGAGATTATAATGAAGGTGGGCAAGAGAAAATGGGGTTAGGAGGGGGTGCTGAGTCACCAATATTCAGTGTATGAAAACTAAGATTTTCCTGGTTATATTGAGAGAAATGCTACTCATGGCCTCTTCTTGAAACATCTCCTTACACACTCATTGCGTATCTTGTATATCTTGTGTAGGTGCTAGGAAGTTTCAGAGGTTTGGTTGTAAAGAATTTTGTGGCTTAAAGAAGGAAGAACTTTATAGCTGAGTTTACTGATCCATTTGTTTTACAATGCAAAAGAACCATGGGAAATTCCCAATCTCTA---------------------------------------ATTTTGTATAAACAAAAGGATTGAATTTCTAAGGACACGTCAAACTCTATGAAGTTCTTTGGTTGGgtatgaataattttt--taagagattttctgttcttgttttaatGTTGTTCTCAGAaggatgaaattataaagatcagagcagaaattaacacactggagactaagaaaacgATACAAAGGATTAATGTTGCTCTCAGTATTTCTGTCAGCAGCATTTAATGCCCCATACTTTCCCAGGAACTTTAATGGTCTTTGCATTAACTTGATATGATGG-GACAATAAGCATGCTGCACAGAAATCATATTTTGAATGGTAGCAGTGCCACAAGCTTAGGAAACAAAGACAGGAGAT

a score=14494
s chr3           101769339 1507 + 160039680 CAATAAGAAAGCTAAACTGAAGAGTCTCAGTCATCCATATTTACAGTCAATATAACTATCTGCATATGGAAACTAGG-----TTTATAGTTAAGCACTATAAATG-GCAGAATGTTCAGCAGGTTGCTGGATACAAGACTAATCCACTGAGAAAAGCCAATGAGCAAGCC-----CTGAATAtggaccatccctgattctgctctctcatctcccacatctaat-acttactgaatccacttgagtacaca-tattcaatatatacaaagtgcactgacatctcaccaccatctccctaagccaggccactgtcattt----ctagtctatgccagaaactttctaactggactttctgAATGCAGTTCTACCTCA-TGTGTCC-CTCAAGTGTAGCTGGCATTGTCTTTCAAAGTCATTCACGTACCTCAAAAGCTTGACAATGCTCTTGAGAAGGATTCACAGCTCTTTAGGTTCATGAAGTTCTTCACTACCCGCCCCTGCTGGTTTTCTTTCTTGCTATCCCACACTTCCTACTTGAGAACTCCAGCCATTCTGGATCCATTCACGTTCCAATGTACCATTCAAAGCAATGTTTCTACCTGGAGCATCCTCCTATTCTTTACTACCCCTCCCTCTTCAGctccttctctctctctctctctctctctctctctctctctctctctAATGAtttaattttactttatatgtatgcgtgtatgtgtttggtgctggaggagaacagaagaagatataagatcccctggaactagagctacaggaactcatacagatgttgtgaactgctgttgactgtgggaattgaacctgggtcctctggaagagcagtcagtgctcttaaccaacagagccatctctccagtcccTGCCTCTTTAGCGTCTCATCCATTCTCAAGCTTTAGGTTGGCCTTTGTTTCCTCTGACTTCCCAAGCTAGGTGAGAAGCCCTGCTGGCTGCACTCTGAGCTTCCTGCCTCCCTTATCTCTTCATGGCACTGAAAATGCCTTTAA------------CCCTCACTCAGCATCAGCCAGC-GTAAGCTCCACAAAGGTTGCAA--GTGTGCCTCATTGTATTTTTCATGCTGAGACCTGGTAGGTGCTTATTAAATAAGTATGAATAATGATTCCC--TTCTGTGCTCTTCTCAGGCAGTGGGTTAAAAAAT--GGGGACTGG--GAAGAATCCCTAGGCCAGGGTGAAGACAGCTAAGGCTCCAGCC-ATGGGTCACTGTCCTGCAAGAGCCACCACAGAGCATCCCAGCTAAA-----CCATATCTCCAACAGCAACAAACGTGCTCTGTCTAATTTTAGAACAGAGAACACTCAGGATACCA--GGGCTTATAGGGAAGGAGTAGGGAGCCCCAGAATAACGACACAGGTCTGCCTCAGTGTGTCATGAAC--ACTGGATGATTCAGATGTCCCTGAG---AGGTGACAGAGCTTCCCTTT--ATTTCCCAGCAACCTCCATGAGTGGGATAGCTCATTATCCTTAGTTGTTGATGAGGCATATGATTTTT
s HiC_scaffold_1 111823182 1224 - 233722169 catcaataaaacaaaagggTAAAACCCAAACCATTCTTATTAGTAGTCAATACAATTA-----------AAACCAAGCCATATGTACACTTAAGgtttagaaatacaaagaaagtctTATACTTTGCTGGATACAAAACTAATATAT--AAGAAAACCAATGAACAAATCACAACCTGGATACTGACCATG---------------TTACCTCCCACATCTAATCAGTCATCTAATCCTGCTGATTACACCCTACTCAATATTTGTAAA----------ATCTCCCTGCCACCACCTTAATCCAGGCTGCAAACATCTTTGTCTAAATTATCACAGCAGCCTCCTAACTGGTCTTCTTGAATGCAAATCTATCTTACTGCATTCTCTGCAGCATAGCTAGAGTAGTCTTTCCAAAATGCTGGCCTCC------AGCT-GCTAACATGCTTTGCAAAGACTCACCCAATCTTA-----------CTCTTGTCCACC-------------TTTATTTCTTGCTACATTACACTTGCTACTTG-GAATTCCAGCCA--------------------------------CAGTACAATTCTTCCac----------------------------------------------------------------------------------------attattaaatgaaaattttcatgaaCACTTGTTT--------------------------------------CCCTCTGAAAC-------------------------------------------------------ATTCTATATCttct------------------ctt------------tgtatctt---tttttgcCCCTTGAG-GTCCTAACCAACTTCAAGTGGTAGACTGAACCTTACTTCCTCTGACTTTCTGAACTAGGTGAGAAGGCCT----GGTGCTCTTGTAACGCCTGGTGCCCACTGCCCTACCATAGTGCTTAATATGTCTTTTAGTTCCTGCCTGTTTGTCATTTTCCATCAGCCAGCTGTAAGCTCTGAGGAGGCTGAGAGTGTGTGCATAATTGTATTTTTAGTGCTGATACACGATATGTgcttatgaaaaatatattaaaagtaaatcTCTATTCAAGAACCTTCTCAGATATTAGGTTGAAGGATGGGGGGATTGGATGAAGGA----AAGGCCTGggcaaagaaaaatcaaatcactGCTGGTGAGTTATTGTACT--AAGCAATAATTCAAAAGACCGCAGTGAAGGTCATTTGTATCTCAGAAAACTCTAAATGTAGTATCTCTTACTTCTCACTCGAACATCCTTAGGGCGCCCATGTGTTTACAAGAAAATA-CAGGGGGACCAAAA----------AAGTAAGCTCCATTGTGTTAGGGACATATCAGATGGTGCAGGTGTCCCCAAGCAAAGAGCACTTAGCTTCCTTCTGGATTTCTTCATCTCCTCATGAAATAGGATGTGCAATTTCCCTTGGGTACTGATGAGGGACATGAATCTT

a score=31002
s chr3           101779872 1614 + 160039680 CATACTCACCAATGAGAGTATCTTAAGTAGCGGGAAGGGTCAGAATTGCAGTAAGTAAACA-----GAGTGATAGCAGTTACAGAACATTCGATTGTGTATAAAAGAGAAA--TATCACAATG---------CCTTTTAAAAAAGAGAGAGATTTCCACATTGTATACTGGGGTACATGGCAGGAAGCT-----------------------------------AACACACCTCCAGAGATGCACCTCCTTCTCTTT----CTTTTCCATCC-----ATAGTGTGTTGGCTTTTCTCTCTATGTTATAAAAGGGCTACTGGGCATCCAGTTATTGTGCCCATATTCATAGCAGGAAAAGTGGGGAGGGCAAGAAGCA---------AGCTAGCCAGGTCTGGCCATTTCCCACAGAAATGCCTACGCTTCTG--AGAGTCTGCTTTTGGTTTC-TTCCTTTAACAAGACTTGGATCCTGTG------GTTATCTCTGGATCAATTCCCTTGCAA-AGTCTCTAGAGTTCATGGTTGTTTCAACCAGGCAGTTTAAC-CACCCTCTGTGC------------CTCCCCTTGTCATTAGAGG-TCCCCAAGGGTAACTGAAGAGACTGGGATTCTGTTGAGGACA------AGGGACAGACAT----CATCGGGTGGTGTCTGTTAACAAAAACTGTGTGTCAAAAAGACTCTAATAGCATTGACCACATT--------GTTG----gcaaactgagaactcagaatgctgtgttcaaaa---actaagagtctc--agactac--cagtggttaa-----gtaattgtgggacccttctgagTTCA------TGGAGGAGGCA---------------------------------------------------------------------------------------------------------------------------TGAGGA----ATGTGAGG-GGGGCAGAGAGAGGACCCCAGTGCTTCTTAGAGAAAAGAGTTAGAGGA--AAGCTGACAAAATGGGG--ACATAGAAGACAGTGAGTGGGTGCCAAATGCAT-------ACTGT--------ACTTTCTGTCTCTCTGCCCTGAGC-AGTTTGGGTTGGAGCTTGGGGGGGTGTTGTGCACATAGGACAGATAGGAGAGGGAATGC-AGATGGGTGCTGCATTCA-CCCAGGACCCCCACCCCACCCCGGGTGGACATAGTTTTTCAGAGGGAGGAGCCAGTTGGTTGCAGCCTCACTCTGCCAGACACTCACTGGACCCAGCCTCAAGGTGCCTTAAGCAGGTCACCTGCAATGCAAGCTCAGGACACATGTCCCAGGGGTCATCTGAGGAGCACTCACTCCAGAGGAAAGACCTCATTGTTCCCTTCAGCATGAATGCCACCCACCCCTGCCTAGCGTCTTCCCACCACCACTGTCCCCAGGCCTGCAATACTAATTTGGAG-GGTGTCAGTTTTCAGAGATT----GAGTCTG-AATGGTGGGGTT-CAGAAAGAGGAGGGAAGGAAGAGGCCCTTGGAGCAGGATTTGTTTATGCAAACC-----CATCCTGCCCCTTCCACCTTAGCCATCATCCCAGC----AGCTGTGCCCTACAGTGATGAGCACAGGGCTTTGGTGACGTCACCCCCTCT-GCTGCCAGGAGACATAAATTCCATTTCCCAGAAGATGCGGCAGACTGTAGCTTCTGGGCAAACAGTAACACTAGCGGTAAA-CATTGGCGG-----AGAGACCTTCAAATGGAAGAGCTGTGTAGACCTGGAGCAGCCAGGCTGCAAATCCCCTAA--TGGAGAAGGATCTCATGCTTCAGACAAGAAGACAGGACTCGCAGTGGCCAAAACAGTAAT
s HiC_scaffold_1 111827848 1798 - 233722169 catgcccagcaggaaGAGTGTTTTAAGTGAAGGAGATGAACAACATTGCACTAAGCTGCTGCTGAGAAGTCACAACAGCTATAAAACTTTTAACtgtagacaaaaaagaaaactgtcataATAATGATCTGTTTTCTTAAAAGAGGTATCG-----------GTGTTCTTTGGTGCCGGGTAGGAAGTTTAGAGAGGGGTGGTGTAAGACCCGGGCAGCACTCAAGGATGTCAGCAGGGACctgcctccttctctctgtctctttttcattCGAAGTACAGTACGTTAGATTTCTTCCATGTGTCACAAAAGAGCTGCTGCACCTGCAAACATCAAGCCCACTTCCACAGCTGAAAaagtagagaaggaaaaaagcataAAGAGCCAGGCAGCTGGGTCTGGCAAtgttatgcaaaagaaaaaagacttctcCCAGAATATgcttttactttcctttctttgataacacataagtcatatatatatagCCACTTCTGGATTACTTCCTAACCAAGATTCTTAAGCTTCCGTCCCTGTTTAAGTCAG-CAGTGTGGCTCATCCTCTGTGCTTGAGGAAGGGCCTCTCCCTGAAACCAAAGGGTCCCCAAGGGCGACTGAAAAGACTGGGATCCTGTtagaggcagggaggagggatGGATGTTGGACAGTGGATGATGCCTGCTTAcaaaagttacattttaaaa-gattcaaataGAACCTGCTCCATAAATTTCAAGTTGCAGCGCAAAACAAGAATTCAAA--TCTTTGTTCAAGACTTGTTAAGAGTTTCTGAGACAGCAACAGTGGAGCATCACGGCAATCA--GAGCCCTTCTGAGTTCAATGTCCGGGAGGGAGCAGAGAGGCCACACCCATGAAGTCCAGCCTGGGTGCGAAGCTGTCCGTCGAGCTGAGCAGACAGAAGACCCTTGGTCAGTCTGGGAGAACTGGGgaggacaaaaaagagaaagaacgcAGGGGACTGAGGAGTGAATGCGAGGTGAGGAAGTGGAGAGGCACCAACACTCCTGAGAGAAAATAGACAGAGGAGGAAGCTGAGAAAATAGGGGAAAATAGAAGAAAGTGGGTGGAGGCCAAATGTATCCAGCAAACTGCTGCTTggcattttctgtctctttgtccTGGGCCAGCTTGTGCTGGAGGTTGGGGGTGACTTTCCTA--------GGGTGGGTGAGGAGGTGCTGGATGGGAGCTGCACTCAGCCCTGGGGCCCTGC------------------------------AGGGGGGTCAG--GATTCAAACCCACTTCTGCTGTGGATGAGCACGCCCCACTCTT---GTACCTTAGCTAACTCCCTAGT-------------------TAACACAGGGCTCACTGGAAAATGACTTGCTGC--------------------CCTTTGAGCA-----GACACTTCCTCCTGGTCAAA---CTTCCACTGCTATTGGCCCCAGCCCCTCCATGCTAATTTTGAGAGGTGGTAATTTTCAGAGATTCCATAAATATATAATGATGATACtgcaggaagaagagaggaagcag--------GGAACAGTATCAGTTTATATAACCCTCCTTCatccctcccccacctcctctGCCATCTTCAGAGCTCTGGGCTGTGCCACTGGGTGATGTAAACAGCGCTTCAGTGATGTCACCCCCCATCAGTGCCAGGAGACATAAATTTCATTTCCCAGAAGATGCAGCAGAGAGTAGCTTCTGGGCAAACAGTGACTCTAGCAATAAATTAttggcagaagacagaaactt---ACTGGGAAAGCTTTGTGAACCTAGAGTGGCCAGGCTATAAAT---CTAAGCTGAGGAGGGGCTTCTTCCTTTAGATCTGAAGGCAGA---TTCATTGGCAGCAACAGGAAT

a score=23846
s chr3           101783736 1698 + 160039680 TGTAAATGTTTAAGAGGAGTGAGGCTGAGTTTGGACGTGTTTGGCTTG---CTGTTTGTCTGACCATAGACATGCCCTGCTAGTTTTCGGTTTTCCACCCTGGTCTAATAAGCATTGAAGAGA----AGGCAAATGAAGGCTGGGAAGAGAAT------------------CCAGAATCAATCTCCTTTCT--CTTACTTAGGATCAGCCGTGTCCCTAAAAGAGCATCTGCAGTTACCATGGCAACCTAGACCCTTCCCACTTCACATCCTTGTGTCCAGAACAATAACCCATCTT----AGCCCTCTGTGTTTGTGCCTATGAGTGGG----------------------CCTTGTGGGAGTGAGAGTGATCTAATATTAGGACACTGTGCACT-CAGTGCTCATTAAGAGACCAGGAAGTGCTCACAAAGAAGACTTTTATTTACCTCCTCTAATAGGACACAGGAAATGGGCCATCTTTGATACTTTAGACCAGGGTGAAGTACACTGCTGCCTCTAGACTCCTGTGTGGTTTTGCCCAGCTTATGAGCTGAGAATGGCTTTCATATTTTTTAAGTGTTTGAAAACTCAGAGCAGTGGTTTCTCACA-GTGAAGACAATGTGTGGCCAATCGTCTCTGTGCATAGCAGTGTTCTCTCAACCCACAGTCCCCCCTTTCTTTATGAGTTATCCAAGGCTTCTTTCATAATTAGGACAGAGCTGTGAGTGAGGCTATCTGGCCCACCAAGCCCCACATATATCTATTTGGG-------------------------------TCTCAGTGTTCAACTCAAGAAGCTTTCACTGAGAATGGACTCATGGAAGGCTCTGCCCAGCCTAGGGT-CACTGAAG--ACCAAGG------TTGCCTCCAAAAGGCCATGGCCAGGATCTGAATGGTAATACACTATGCTTCTAGGGAATCCAGAT-----------CTTTGCAAAGAGCCCTGCATGATGGCTTATACAAAGGAATTCTAGAAGGAGGTGATATGGACCTTGC-----CAAGGTCTAGACCATTCTGCTTCCAGGAGATCTCAGTTCTTTAGCAGAGCCCTCTGATCTACTGCCACGAGCCTAATTGGTAGCAGTCTCTACGGCTGCTTGTATATAGG-TGGTTCTCACATTCAGGCACGTCCCTGTGCCAACC-TGTTCCAACTGGCATTTTGCAAATAGGTGCGGGTATACCCAGCCTTGATATGCTGAAGGCCTTTGGGCCACAACTCCAATAGTCCATTGGTCACCTGCCCTGTGTGGATAGCTGCGG-CCCTGTTCCTCTGGTGGATTGCTTTA-TGGCTTCTCTGTCGCCCTTTTATTACACTTACTGCCTGCAATCAGCTCTCTCCCTCCTATCCTCA----GCCTGCCTCCCACAGACTT---ATGTCTCCTTCCCTGGTGTCCTCACTGAGCCTTTCCTGGTGTCACCTTTAGGAAAGCTTGTCGTGGGA-------------GGCACAGGTCGGATTCAAGCAC-ATTCAACACCAATAAACTATTAAAGTAGCAAACTAATGGTCATAGCTGGC----------------------------------------------CAAGTGT----------------CGTTCAAGGTCTCCCAGGCCCAGGGACACTGGGCTCCAGGCCTGGAGAACGT---GCAGTGTTTACACAGTGGCGTTTGTGAGCT--GCTCTACAACAGTGGGGAGTCTAAATGGGCTTTGGAAATTACTAACTGTAAGTTGGGTTGA------------CTGTTGACTAGGTAAGGACTTGACCTGATCCAGGGGAAGGTG-CAAAAGACAGCAATATATGTGGTGCACGAGGACTGGATAGGATAAAGGATGTACCCAGGCCC
s HiC_scaffold_1 111832019 1763 - 233722169 TGAAAATGTAAAAGGTCAGCATTACTAAGGTTAGAAATGCTTTTCTTGTCACTTTTTATCTG-----------TCCTTGCCAACTTCACACTT--CATGTTGGTCTAATGTACACTGGAGAGATGGTAggtagataaaa--taaaaagataaatcagCCATAGGTTGCTGACCAGCTCCAATCCCCGCTCTGTCTCACA-AGAAGCAGCTATATTCTTAAAAGTGCATCTGCAATTACCATGGCAACCTGGGGATGGCCCTCCTCACATC-TGGTGTCCTGAACATTGGTCTTACGTGGAGAGCtctatgagtgtgtgtgtgtgtgtgtgtgtgtgtacacatgtgtgtgtccCCAGGGAGAAGTAGAGTGGTACACCTATTAGACACTGCATACCACATTGGTTATTCAGAGAACAGGAAGTGTCTACAAACAAGACAGATGTTTATCCCC---AAT-GCAAACAGGAAATGGGTCTTCTTTGATGCTTTAGTCCAGGG----------------------ATTCATGTG-------ACCC------CAAACTAAGAGTAATTTTTACGTAACT-AAATGgttgaaaaagcaaaagaatatttcATGGCCTGTAGAAATTACGTTAAATCAAATGTCAATGCCCATTAAAG-ACTATTTCATCAGAAATCAACCCATGCCTTTTCACACCACTTGTAGCTGCTTCCACAGTTGAAATCAAACTGTAAAAGAGGCTACTAGGCTCACCCAGCTTGAAATATTCACTCTTGGGACCTTTACAAAAAAGGATTACACATCCCTCATCCAGATCTTAAATTCAAGTGACCTTCATTGAGAAGAGATGTGTGTG-GGCTCCACTTGTCCTGGGGGGCACATAAGGAACCAAGTACTAGCCTTTCTTCACAGGGTCAGTGC-------TGAA--GAAGCGCACTGAGCCAC-ATGTAGTTCAGGTGCGCTCCTACCATATGTATAAAGCACTG-----TGGCCCCCACACAGGA-TCCTG------------ATGGCTCCTGATTCCACAGGGTCTG----ATTCTGCCACAGGGGACTGACACACCTTCAACAGA-----------------------------TGGT-------TCCAGAGGTGTCCGAACATGGGGTTACTCTCACACCCAGG----------TGCCAACCAGGTTCCAACTGGCACTTGGCAAATAGGTGTGGGTAGGCCCATA------AAGCTGAAGTCCCTTGGGCCACATCTGCAGCGATCCAAGGGTAACCTACCCTCTATGGATAGCTGTGTCCCCTGTTCCTTTAGTggattgttttattgttttccctGTTA-TCTTTTATTGCAAGTACTGCATGCAATCTGGTCTCTCCCTT---TCTTCACATTCCCTGTTCCACACACATTTATAATGCCTTCTTTCTGGACAGCCTCATCAGGCCTTTCCTGATGCCACTTTTAGTCAGGCTTCTCAGGGGGCAGAAACCAAGCCAGCAACTGTCAGCACCAGGCACGAAGCAGCACCAACAAAGTACTGAAGTGCCAAAATAATGTTCAGTGCCAGCAGCCCTCATCTCGGCTCATTTAGTGCAGAAGCAAAAGGCCCTGAGGCAAGTGTGACCTGGCCAGGTTAACCTGAAAGGCTTTACAGGTCAAGTAGTACAGCTTCCAAGGCCCAGTGCATGCTAGGCACTGCTGTCA---TGGCACCTCTAAGTGAAGCTCAAAGAAAGTGGCAAGGCCATCTGGGCTTTGGAGAGTGAATCTTAAAAATATGGGCAATAACTCCCTATGTTGTTGAATGGGACAAGATGTAAGGGGGTCCAGGGAAAGGTATCAATTGACAAGGGGAGGGGTGGT-CACAGGAAGTCAACTTGTGAGGAAATAAACTCTGGCCC

a score=23282
s chr3           101793883 1040 + 160039680 TCCTGCGGCCA-GTTAAATGTC-CCATGGATACACCTCTGCAGCAAACTATGCAACTGCTGCAAACAAGGCCT-CCTTGTGAATTGTGCAGAGGCTCATGAGTTAGCATTAAGTTCAAAGTTGGGACTCATCAGGAGGATGTAGGAAGAGGT-GGCCACTTGTGAGGAAGGCCGGACAGCGTGGAGCCCAGACACAAGGAGGGCTCTGTCTGCCCCCGAGCACAACGTGCCTGTTTCTCAAGGTGGAGTTTGGAGTTTGGGAGCAATTCTCTTTCTGAAGAAGGAGGTTTTTATTTCCTCCTCTCTCCACCTCCCTTCTGCCTCCCTCAGCCCAGGGGGAATTTTTAGAACTATATAATAAGGACACTTGCAGAATCACAGCCTCTTTTTCTGAACGTGTTTCTTATGTAAATGC-ATAGCAGAAAACCCTTCCTCTGCTTTACACTTCAATCCTGCTTTGAAAACCTGCAACACTGAAAC----AGAAAAAGACACCTTGGGAATGCATTGGCTTTCATCTGCTTTCCATTTTTACCTAAGGCCCCTACCCGTCCTGTGCCCCCCACCCCCCAGCCTTTATTCTTCAAGTTAAGATTAATTTTAAATCATCTCGTGTTGAATAAG----------------GACGGTTCCTGTGCATTTGTTCCGTCCAAATATATTGAGG----TGAAGCCCTTCACAGCAATCTACCAATCCTTGGAAAACGGAA---AGGGCATAGGATGCCCAGCAGCAGGGCACAGAGACTCTCTATCAG------------------ATGACTGGGTCTCTCCTG-----------TGGAGGGAGGGGAGCAGCCTGGATCCACAGTTGGCCTTCCAGGTTTCCTTCTTATCCTCCTT--------------------------------TCTCTCTTC-------------------------CCACCT--------------CTTGGTACAGTGGTTTGTTTACCAGTCTGT-TAGCCTTGCCTTGGGAACCCAGCAGTGAGGGGGGCAAAGGATTCCTCTTCATCCCGGCTCAGAAGCACACCGCCAAACAGTATTTAAATAAAGAATAAATGCATGTGTTTAACCGAGCggtgcttgaatgaatgggtttgaagcccaactcagacacttaactggctgcat
s HiC_scaffold_1 111840935 1083 - 233722169 TCCTGTGGCCACAATCAGTGTCACCTTGGA---------GCAGGAGAATACACAACCACTAAAGACAAGGACTGCCTGGTGAATTATGCTGGCGTCTACAATACAGCACTAAGTTCAGTGTCCAGACTTGtcagatggagggaggaggactCAGGTCAGCTGTAATGAAGACTCGAGAAGATGGAGCCCTTGCACAGGGTGG-----------CCCTG-----------------TCCTAAGGTAGAATTTTTGCTTTGGGAGAGTTTTACATGGGGTAGGAGTGGGGTGTTGTTTCCTCT---------CTAATTTAAACTTTCCCCATTTCAAGGGAAATTTTTAGTACAGCATAATAAGGACACTTTCAGAATCACAGCCTCTTTTTCTGAATGTGTTTCTTATGTAAATGCTGCATCAGAGAAATTTCCCTCTGCTTTATACTTTAATTCTGCCTTTAAAACCTGCAAAatagaaacacagagaaaaagacacCTTGAAAAT-CTTTGGGTTTCATCTATTTTCCATTTATACCTTAggtttccacattt-----------taaaaaaaattcttgattcTTCAAGtcaagcatatttttaaatcatctgcTGTTgaaccaggaaaggaaagaaaaatgatgattCCTATACATTTAGGCTGCCTAAATATACCAAGAAATTCAAGGCACTTTGTAATTATCAAAGAATCTTCAGAATGCCGCAGTGAAGTCAGGTGGTTCCCAGCAGGGAGGTGAGAGGATATTTTAAGAGGCCCAATCTGAAGCTACTGTGGCCCCGTCTCCCATGTCACTGGCTCCTAGAAAGGGTAGAGAGGACCAAATTCACCTTTGCCTTTCCaagttttctt-ttgtcctctttgGCTCCTGCCTTTGACTGGAGCCAGCAACATGTCTGTCGTCTGTGATCTGCCCAGGACACACCACACCACATCCATCACACAGCACCTTGCTGTGGTGATTCATTTCTCTGTCTATGCAGCC---CCTTGGGAACACAG---------------AGGATTATATTTCATTTCTATGTTGAAACACACAGCAAAATAATACTAACAC----ATTAACGACACTTAATGAA--------TGATCAGATAAGTGGGTTTAAATCCAAACTCAAGCA-TTCACTAGCAGCAT

a score=16137
s chr3           101799104 780 + 160039680 GATGCTCATCAGTAGTACTTCTTGACTCTGTAGCACCCGGTGCTCAGGATGCTAAGCACCGTGATGACTACAATTTGTTCTGCACCTAGACC---CACACAGAA---GCCCCAGACTGTGGGGCTGCGAAGCATGGGGTCCAA-TCATCTGTTTACCGAGCCCCGTTAcctggatttccatcccctggtgtgtcact----ggccaagtggcttt-------------aaccactccaggcctggtttttccttgtgtgtaaaatgaaagcaaactttgcctaaccccaggttctgtcacagcaactgaacaaggaaatttgagccaagtgtttgcacagttgctgtccacccagAACTCTCGGGAGTGGAGGGAAGATAGGT----------------GGGAAGGCACCTGACCTGAGCCTCCGAGGCCAGAGGAGGTTGAAGGAGGACCAGATAGGTGACCTGGAAATGACCACAGGCCTGAGTCCGGGCTGTCAACTTTGATATCCTGGAGGGGCGATACATGAGAGGGTAATTCCGGTAACTATATTTCCTTGCAGAGTACACTGTGCTCTGCCA-----------------CAGGAACATTTTCTCATTACTATATAATAACATCAGCGCTAATGTCCTCTTTCTCAAAGGAGTCCAGAGCACTTAGAGATTGCATGCTCAGTGCCCAA--AGTGCAGGCCTGGGGTTGGTGGCAGAGGCTGCCAGATATCAGGCTTCTACTGCAGTAAAGCGAGCAGAAGCCAAGG---GTGTGTCACACAGAGTCACCGCACTCAGCA-----------TCTCTAGTGCTCTGGGGACCCACTCAGAAAGGTCACT
s HiC_scaffold_1 111850174 798 - 233722169 GGTGCTGGTCAACAGTACCTCCTGCATCTATGGAGGGCCCAGATTTGGATGCCAAGCATG-----------AGTTTGTTTTGTGCCTAgaacaaacacatagaaaaagcACCAAACTTGGAACCTGCAAAGCATAGGGTTAAAAGCATAAAGTTATTGAGCCAGTCTGCCTGGGTT-CCAGTATCTACTGTGCCACTTactagctatgtgaccttgggtAGGTTACTTAACCTCTTTAGGCCT----------CATGCCTAAATAAGAAG-------------ACTCTTATGTCTATTATAAGAGTTCAGTGAAGAAATGCAAGTAATGT-CTTAAATGGTTGCTGTACGTCAAGAGCACACCAAGGTGGAAGGAAGACAAGTCAGGTTCATGAGGCTAGGGAAGG-----AGACAGAGTAGCTGGTAACAGAGGAGTCCGG-GCAAGAGAAGGTAGGCGATCTAGAAATGACCACCGGTCTGTGTCTGG-CTGTCAGCTTTGGTGCTCTGGAGTGAAGTTAGGCAAGAGCCTAAGTCCTGTAACCACACTGCCTCACAGAGTACAGCGTGCCCCTCCAAAAGCTGTAGCCAgaatctgaaagattttctcatTAACCTATAGTAATATCAA-GATAATGTCCTCCTTCAC-AGGGAGGCCAGAACACTTAAAGACCACGCACACAGTGTCCAGCTCACACAAGCCCTAGGTTG--GGCAG-------CTAATGCCAAGCTGCTACCACAGTGTGGAAGGCAGAATCCCAGGCAAGAGCATCA-GGGGGGCAGCTAGACTCTGCAGAAGTGCTTCCCCCTCAGTGCTCCTGTGACCCAGGCAGAGAGGCCATT

a score=28125
s chr3           101805273 2120 + 160039680 GGTGCACGATGCTGGTAGATTGGATTTTATTGTTGCCATCCTTGGGATATTCT-----TGTTTGCTAGGGTCTCC---------------ACGAGACACAAAGCTATAGATCAATCCCCTGCCCTGTACTCCCAGTCTTAATGTTATACACTGTTATTGAGGAACTATGGC-------TTCAGAGGTGAAGGGCTGGAAGAAAACCAAGTCTTT--CTGGACCCTCAAATTCCTTTCTTCCTGGCCTAAGGGGCATTGTTCGGATCATAAATTGCAGGCCTTTTAAGAAAAGCAAACAAAGGCT-AACTGCATTGCAAAGGTCACCGGGCCCGTGGAGAGAGCGCGTGATTAGCTTCTGAAACAGAAGGCTTTGAGGACTT-----TACAGGGTTCAAAGGTGCGACCAGAAATTTTCAGTCCAGGGCAAATCCTAAGAAGTCTTCCTCCCCCATCTGTCACCTCAAGAGCTCCGCCCATCTACCTTCTGGGAGGAC-----CCGCTGCTGCGGACAGGGCTGACAGGGCGGGTCAAGC-AAGGGCAGGAA-------------------CATGCCCCACCCCCTCCCCTCAG-----ACCAAGC---------------------CAGGAACAGGGGAGGTTTCCACTTGGAAAGCCATCCTGGTCGGCTTC---TCCACGTGCCTCT-CTGTCACCTGCACTGTGA------ATGACTAGTGATGA--------CTTATACGCAT---GCCCAGGCGGTGACCTTGGAttttttttttttttttttttttttGGTCTGTGATTCTC-AAATGTTTATGAATAAATtg----ataatgcctaccctggttcaaaggatggttggagggatgaaatgagataaAGCACAAAGAACAGG--------AAATGTACAGAACACATA-------TCCGTGGATTTTAGGGGCCTGAACTGTTCTTTTCTGGAACATTCTCACCCTCCACCCATCTGTTGTCTTTGTGCCGAGCTGGGTGGGGGACGCTTGCACTGGGTGGGGGACACACGCTGTGTGTCCAGGGTGGACTGTACTGTGACTGTCCCCATGGAGTCAACAC---TCCCCTTTGCC-----AGCCTCA-TCCAGAGCATGGAGAGCCTG-----TGGGTCAGGATAGCCTGTCTGCGGTGGGAGAGGGCCACAGTGTGGC----GAACTGCTCTCCTCCGCTGC--------------CATTGG----CCACGGTCA--GCAGCCAGCCAG-----AGAGAAGCCGCGAGCGCCCCCTGACGTCTTCACCGCACA--GCACAGGCGGGGCTGCCACAGCCAAGCA--------------------------GCAGATCTCAGTCAGC--CAGCAGAGATCGCCAAGTGTGCCCTGCGCATCTCCTGCTGGTCTGCTGTAGGTCTTTAC---TCCGTTTGGAACACCTGTCCTGGTCAT----------------AAAGGACAGGTTTCACATATG-TGAATCCTACATAGAGAGACCCAAGGGCAGAGGACATTTTTGATGACCATTACCACGGAGACAAAAGG---AGAATATTCTAGAAGGAGGCAAAAGAGG--AAAGGGCAAAATAAGAGAAGACTA----TGGGGCTTGGGGTGAAGAAGAAAAGGAGTCC-------AGACCCTTTGGGCCCATGGCTCACTAAGTG-------------------AGTTCTCCATCCATGGTTGCCT-----CTTGGGCCTGAAACCACAGGTTAGGTTTTGTTTCGAGCCGCCCTAATGTTGACTGCCCCA-----CAGAATATTCCCATCCCCCTCCAGGTGGGGAGGAGAG---------TCTAC----------AACTCTGACCAAGTTTGGGCTGTCTTTGGGAGATGTGATTTGCTCAATTACGGCACAGTTCCCTGACACTCGGCACTGATCTCTCATTCCTTTGTATCCAAGCACCCCGGGTTGGGTCCTGACAGGAGAGTCATGAGCTACGAGGACTTAAAAGCTAA------AGCTGGCAAAGGAAAGTGACTCCCTCTCAGAGCAAAGCT-GTTGAATGAGAGGAAATGAATGGTCTAGACTCAGAAACAAAGCAATGGGGAGGGAGGGCTTCTGCCAAGACCACTGCTATTTGTTCCCAGGCTTGGCAGGAAGGGAGAAAGCCTGAA---------AGCTTTGCTGACAAGCATTGTTTACAAGCAGAGAGAGTGTGTGTTGTCCACACAGCCCTC-GAAGTGCACCTTGGATCCCAGTCAGGATAG---------CAGACACCAGCT------GTAGGGAGCTGCGATGCAGGCCCATCAGTGTGCC--TTCTCAGGTCTGCTCTATCAGGCTGCACAGA------GAGAGGAGGCAGGCACTTCTCAGAGACAGGCTTCTGGAGCCAG
s HiC_scaffold_1 111858942 2305 - 233722169 GGTGCAGGGCCAtgatgg-ttggattttatt-------ccttCGGGGTGGAGTGGGGGTGTCTACTCAGGTCTCCCATACTTAGCACTCCATGAGGCCCACAGCCAGAGA-AAATCAACTGTTTT---TTCTGGGTCTCAGT-TCATAAACTTGCACCAAGGAAATGGTGCCCGACTTTCCAGATGCAGAGGACAGGAAGCAAAACAAGTCTTTTACTGGACCCccaaattcctttctttttcacctAAAGGGTGATGGTCCAATTACAGACTCCAAAACTtttaagcaaagcaaacaaaacctcAACCACATCGCAAAGGTCACCCGGCCTGTGGGGAAAGTTAACGATTAACTTGTGAAAGTGA--TTTTTGAGGATCTACTTCCACAGCATTCAAAGACATAAGTAGACAATTTTAGGCCAGAGAAAATTCTAAGT-GTCTTCCTCTCTTATCCCTCACCTCATGAGCTCTGCCCATCTTGCCTTCCCTAGGACATTGACCCCTG-TCCAGGTGGGG-----AGTGTTCATCACGCCAAGGGCAGGGAATGTATATGTGGgtccctccctgccctgcccctgtcCCTTGGCTCCTGCCAAGTTCACTTGGCTGCAGAGCCCAGCAGGAAAGGCTGAGGCTTCCACCCGGGCTCAGGTCTTGGTCTGCTTTGTTTCCACGTGTCTCTTCTGTCACCTGTACTATAAGCCATCATGACCAAACACAAAGATCGGCTCTGTCTGCATTGCATCTAGATGGTGACCTTGGGTCACTTCTCCATTCC------------CTGTGAGTCTCCAAACGTTTATGAGCAAATGGGTTTATGATGCCTACC-TACTTCAAAGAGTCACTGT-GGAATTCAAAGAGATACCGCATACAGCGCCCTCCTCCCCCAACTGTGCCAGGCACCTAGGAAAGATC--TGGAATCTTGGCATC----CCGTCTTCTCCTGGAGCATTCTTGCCC------CATCTA-----------CCACGCCGCCTGTGGGA-GCTTGatttt-----------ctccctctgcttccaggAAAAGGCGT-------------CCATAAGCACACCACAGCTTCCTTCCGCCCCTGCAGCCCAGCTCCTGCACAGAAGGAGGCTGCCACCTGGAGCAGGGC------TCTTAGGTGGGCATGAGCCACTGTGTGGCATCAGTAATGTTCCCCTCTGAGACGAGGGATCCAGGAACATGGGAACCCCGGGGTCACGACAGCGCTCTGGGCGCCAGCAAGGCTGCA---GCCACCGCAAATCCGCACAGCGCGTTGCAGAGCCCGGCCCGCAGTGTCCCCGCACGCTCTCCTTCCCCGCTTCCGCAGGCGCAGTTTCCCTGCGGCTGCCGCAGGGCGAGCAGAGCG-GCCGCGGGCGCCCCCTGCTG--CCGCTGCACCGCAGTGCGGACCTGGAGGGAACCCACGCACCGATCGCGCCGGGTGGGGCTCCCAGAGGGCAGCAGTCACACACGGTGACTC----GTGGACAGAATGGAGGATAGTAGGCTTTTTTGATGCCCCTCACATCTCTCATGAGCGGGATAAGGCATCATGGCAGGAGGCAGCGGAGgccagagggaaggagaggagaggcctCCCGCTAAGGTTATGACCACAGAAGGAAAAGATCCCCAGCGCCAGCAACCTTGCACCCC--GCCCCCTGCACGCCCCAAACTACCCTCCTGCAGGCTGCCTGTCATGCTCACCTGCTCTCTCTCGCCTGAAAATTCAGGCTGAGGTCTTTTGGGGG-------GGTGTTG----CCTCAGTTGGTGGGGTGCTCTGATATCCTTCCATGCAGGGAAGAGAAAGATTACGTTTTACTCTAGATACAAGCTTTTGCCG---TTGGGCTGt-----gaagatat--ttttattcatttcggTGGTGTTCTTTCCCACG-GGCACTTGTTTACTGGTCTTTTGTACCCCGGCACTCATGGTTGGGTCCTGG-GGGAGGTCCATAAGTTTCAAAGTGTGAGAACCGAAGACAGCAGCTCACAAAAGAACCCGCCCGGGGCCAAAAGTAAAGCTAGTTGAATGAAAGGAAATGAGTGGTCTAGACTCAGAGACAAAGAGAACTGGACAGAGAACATCCGCCAAGACCACTACTCTTTGTCCCTGTGCgaggcaggaaggcagg----ctgAACTCCCCTCCAGCCTTGCTTAAAAGTGT------CAGGCTGTAAG-GTGTGTGCTGCAGACCCAGCCGGCAGAAGCGCTAGCTGGAGCCGAGCAGCGCTAGCCGGCTCGCCAGACACCTGCTAGGATGGCAGGCTGGTCCTCTGCAG---CATGACTTTGCCTTTTCTCAGCCATGCCTCCGCAGGCTGCACTGGCCATGCCGGAAGAGCCTGGCCTTCCCAGAAAACGGACTTCAGGAGCGAG

a score=26532
s chr3           101813865 3088 + 160039680 GTTTGTGCTTTTAAGGATATTACTTTGTTAAGCAAATTTGGGAAGAATGTTCAAAATTCATAAAGGATTCCCTGGAGTTGAGAAGCACTAAAAACATGCCAAAGGAAGCCAT--TCGCTCTTAGA--GCACAATCCCCAG--------ACTGTACAGATGTGCGATGCTGTGGGGCTCCGAAGTCTCT---GCATGGTGAAGAGCAGGGACCTC---AGGATCCCTCCTAACATG-------ACCACCAGA-GCCATCATCTGAAATGTGCTTCAGACCACAAAGTCTTTCTTCTT-GTTGGAGGTA-AATGTTGCACCTTTGATCCCAGGACACAATAGTACCGACTCCACCCCAGCTTCTCACAGCCAGAGCTGCCCACCCAT-CCCTCCCAGCCTGCCTGAGGTGACCATTCTGGTCTCTCTT-AGCTGTCCACACGTT---CCCTCAGGATCGTCCTTCTGTGTGTGGTGACAGAATTTACCAATTT-----------------------------ACTGTCTGCTTTCTGTCTTCTCCAGTgagtctgtctt---------gtgcgtccc--tgtattctcagtgcctagTGA------GTGTTTATGTGTCAGCGAGGGAGTGAAATGATGGAGCT-------CACATCCAGATGTGAAGGACATGCCAGGC-------------CACAGCACAGAGCTCGCTCCTGAAATGGAAGCAAGTTATAGGCTTGACCGTGGCAGAGGGGGTTGTGACG---AGTCAGGCGACAGGTAGAGTTCC-AGCTGCGTCCTTCTCTG-GAACTTTCCCTGAGACTTATGATGACTCCCCACAC-TTGAGAGAGGAACGG--------------GACCCACTG-GCCTCTGCTTGG---AGCTGGGGTGCAG-AGAG------------------------------------TTAAAAAGG-------------------------ACACCAGCCA---------CTGGTGGGCTGTCTGTCATG-------------------------------GTATGGG---------TTCTGGTCT----------------------------------------AGCCAGCTGGAGAA--TTCACCATCTGCAGACTAATGCCTGGCCT-------GCACTGAGCCCATCTCCTGAGCA----------------TGGAGAA------------TCAGTCACTGGGGAAACTGGATGAGAGCCGTCCCCAGGAGAGGTAGGGAAGATGAAATGCT-----------TGTATGACCTGG-------GGCAGGAGCAGTTTTGTC--TCTGGTGAGCTAGCTGACGGCCTGGTTCATTCTCTCTGTCATTGGCAGGCTGTCTCTAGCACAGGATCCTGG-CAGCTGACAGAGGAACCACCCCGAGAA--CAAAGTCAAG-CAGGAAGGAATG------AAACAAGGGTTCCTTGGGCCAGC-TCAGGGCAGCTCAACCTGCGGGTTCTTTAGGAAAAAGGCCACTTTCTGGGCCACCGCATCCAGCTCGCTTGGGTTAGCTGACTGAAGGAGGTTGCTCTTTGGAACAAAATAGTGCTTCAGGAAGTGCTGGCTCACACACCTGTGCAGCTTCCGGACGAGGCGCAGGAGGGCTTGATGGAAGACCTGCCAATCCTTGAGGTGGGGGTATTTCTCACAAGTCCAGAAGAGCACGGTCTGGGGG---AAGAGAGATGTTGGGACA-------------------------------------AGTTGAGTTTACATG-----GGAGGAGGAACAAGGCAT--CTTGGGAAAACTGGATTCACCAGGAACTACTGGTCCATTGCTTCACCTGGGC-CTGGGGCTTCCCTAGCTGGCTCACACCTCCAAGTTATT------CTCTCTTCCTTTCCTCTGACACT--CAACCATCAACACTCTCCTGGTGAGTC-ATAGGGCCATCC---AAGCAGAGGCTTTCTGCCTCCTAGCATGCAGGGGTACATGGAAGCCCTCATCT-CTCGGACCAGAGAGTTCTGCCAACGTGGTAGTCTCTTCCTTCTGTATCTATCACTTGCTCACAGGCCTCTGCCTCTCAGAAACCCTATAGGAGCGACTCCCCTCTTAGAAGATGGCCTCTTGGCCTGGTCAGAGCCTCCTGCTCTCCCCTGCATGTCCAGGCACtctcctaatttctctcctcccactcactccgtcccttcatcta---ctccagtgggggacctcctgccattaatcctgaatgcagctctcttagc-ccaagatctccagccatcactatgcaggccctttcagcctcacccctgcttgcctgtcagtggattggacagttggcccacaccctccctctctaaccaactcttcctttggcctccaagacaatggtcttccaggcttctcctctcatcctagctactcctctgcactgcctatgcaccctagccgtctgtgcctgctctgctttgggcatccctgagggtccctccgtggccccttcagct------cttgtccctcccctgcctagctcagtgcagagccgcc-ttctcagtaagatggaggactcacatggtaccttctccagcccagacgctgcctctgacctgcttagt-------cttgagtattggcaacttatctcagtttcaacatgcccagactgaactcatggcctt-cgccacaaac-----ctgcCTTTAGACCTGCTTATCCAGCTAGCTGTGCCAGACACA-ACCT-GGGGCAGCATACTCCCT-GTCACTCACAGCCCAA--CCTGCTCACCTTCCTCCTCATTGGTCTCTCAGACC-TGCCACTCAGCCTCACTTCCCTCCCACTG----TCCTCC------CCACCACA----------CTTTGGTAGCA---TCTAAC-----CTGTCTGTGCCTTTTCTAATTACCAGCTGATCTGAAGTC--------CTTTGTAAAGTACAAATCTTCATCGTTTATTTGTTAA--AATAACAGTTCCACTCACTGTT----------GTCTAAGAATACAagacagggtctcgctgtgtagccctggctggcctggagctgtgtag----accaggctggcccattc-----ctattcacagacatcctcctgctc--ttgcct--------------cctgcgcgctggtcacatgggcatc------tgGCTAAGGATACACTCCTTAGCACGC-----TCTGTGAGGTTTGGTCCCTGCTTTGCTTGCCAGCCTTCC--------CACCAACACTGGTGTCTGTACaatcaggccaagtg-ccaccaacagcg--acagacagggaaaacagggcactaagacacaatggaggactgttcatccagaaagaaatgaagccctgtcctct------------acaggaatacagaagaacatgtgttaagtagaatgagccagactcagaaagatgggcaccgtggtttcctttccacaggtggaaactaaaagataaagtc---tgaatgtggtgggatgagggctgggaattcaagagagt-cagggtgaaaggggtaaaggggttgaagaggggtagggt
s HiC_scaffold_1 111872942 3390 - 233722169 GTTTATCCTTctgaaaattttactttgttcCAAAAGTATGTg-----tgcttaaaaataataaagaacccCATT-AGTTGAGAATCACTAAG-------TGAAGAAACCAGTGATCTCCCCAAGAATGCCTAATTGCTGGTCAGTTGTGCTATACA-AGATGTGTTGCTATGTGGCCCTCAGCGCCCTTGAACATGGGTGGGTGCATGGGTTTTTTTGTGCTCCTTTCTTGTGAGCCCCTACACCTCCTGATGCAGCCATATACAAG-----TCAGCTCACTATGTCCCTCAGCTTTAGAAGAGATACAATGTCACATCTGTAATCTTAGACCACAAT---------TCCTCACTAGCTTTGCCAGGTCAAGTGATCTGGCTCATGACCCCCAAACCTGATCTTGGTCACCTTTCT--TCCCACTTCAGCTGTTTACATTCTTATCTTTCAAGGTCTTTCCT-TGactctattttaatattctatttatttccttcAATGCACTTGCTTCATCTGTAATGATTGTGTGTATCTTATCTTCACCGGTAGGTATTACCCCATTTGCCAGTCCATCCTGATGTATTCCCAGGGCCTAATGCCTAGACATATTTATTTATCAATGAATGAGGGAAAGAGT--AACTGCAGAAATGTATCGAGAGGTGAATGACACCAAAGGCAATCCATGCAGTTCACAATATGAATCCCTTTCCATAGACAGAAGGAAGTCTTAT---------------------TTGCGACTCACAGCTTGGAAACAAAGAGAGGCCAGAGCTGCA-CTTTCACTGTGGACTTACACAGCCA-TCAAGATAACTCCCTCCATACTGAAAGAGCAGTGGAGGAGCACAACACTGAACCACAAAGCCTCTGCTCAGGAGAGTCGGAGGGCAGCAGAGGCGGCACCAGCATGCAGATCATCAGCTGCTACCACCTCATATATGCATAACCCTTGTCCAGTAGCTGTAAGCACCAGCCAGTAGGCCAGCTAGTAGGCTTCCTGTTGTATGATGTCTTTCTTTACAGAGGCCCCTGTACAGTGTAGGAAGCTCCCATCCTGCTCTGCACATTAACACCTCCACTTTACAAAAAGAACCTGTGCACAGCCAGTCAGAGAACATTCCTGGAAAGCACACCACTTTCTGGCCTCCCAGGGACTCTGTGTCCATTTTCTCAACAGATGTCAGAGCCTGTGTAGGGCAGCTAAACTGCTGTCAGTGGTGTGGGAAGCTTGATGAGCACTGTGCACAGGGTTGGTAGTGAGGACGGAATGCTAGCTTGGCTTTTGTGCAAGCTGGTTCCGATGCTTGGGACAGCTTTCCCATTGTGCAGTGCCAGCAGACTGT---GGTGAtcccttctgccatgtgctgTTCCTCTCATGGATAGGTCACTGGGCACCTGGTAGAgggcccatcccaagaaaacaaGGCCAAGTCAGAATGAAATGGTCAGGACACGCAGGCA----GGGTCAGCCTCAGGGCAGGCTGACCTGGGGGTTCTTGAGGAAGAAGGCCAGTTTTTGGGCAAGGGAGTCCAGTTCGCTGGAGTTGGTGGACTGAAGCAAGTTGCTCTTGGGTACGAAGTAGTGCTTGAGGAAATGCTGGCTCACACACTTGTGCAGCTTTCGCACCAGGCGCGGGAAGGCATTCTCAAAATCTTGCCAGTCTTTCAGCTGGGGGTACTTCTCACAAGTCCAGAAGAGCACCATCTGAGGAGGCAAGAGAGGCTGTCAGACAGGGCTCGGGTGATGAGGAGAAGACCTTCAGAAACAAGGGCTGAGTTTGCCTGGCCTTGAAGGAGGGAGAAGGAGTCACCTGGGGAAAGCAGACCCGCCATGAATTCATGATCC-CAGCCTCAGCTGCATGCTCATTCTTATTCAGTGGGTCTCCTACACTTGTTTATTGCTTTATTCTCTTACTTTCCTCTGACATTTCCAGTGATCACTACTCTCTT--TAAATCTATAATACCCCACTGTAGGCAGGTAC-CTCCGCCTCCTCCTCTACAGGGA-ACTCAGAAACCCTCGTTTCCCCAAACCAGACAG------------GGCACCCTCCTCTCTCC-------CCACCAGGACTCTGGGCCCTGCTTCGCAGGATCTGTGTCTGACTGGCTGCCCTATTCCTCCATGGTCTTTCAGTCTG----------------TCTCCCTGCTTTCCCAAACCCTCACCTCCCCGCTGCCTTCCCCCTGCCTCTGCA----AATCTAGGCCTCCAGAG--------TCAGTGGTAAAGCCCTAATG-------TTTGGCATCATTTCCTCTCCTCGTCTTTATGCTGTCTGCATTTGCCACATCACAGTTT-CCTACCATTAGCGCTAAAAGCTG--------------------------CTTTCTTTAAGCC-------CAATGG-CCGCCATGTTTCT----TAGACCAAGAGGCTTTTC---------------------CAGCCTTTGCTTTACCTGATTT------------------------------CTCAGCTGATCAGCTTCTCCCATCCATACCCTCCCTCTTGAAAGGCTTTCATTCCTAGTAGCGTGGGTAATTTGCAAATCATGTTCTCCAGCTCAGA--CTTCCTCTGACCTCTTTAGCTGCAATGCTCGCTTACATGAAAGTTAT----GTCTGAACGTGTCCAAACTGAACTGACGGCCTTGTGCCACAAACCTGCTCTGCCTCCAGAGTTGCTTATCCAGCCAGATATGCAACATACAGACCTAGAAACATCCTTTTCCCTCACCACCCACA-CTCAAGCCCTGCCAATCCTCCTGCCCA-AGGATTCTCAGACCTTTCTACTC-------CTTTCTTGCCAGTGATATTCTTCCATGTTGCCACCACAGCTCACCAGCCCTTGGCAGCAGTGTCCACTGGTCACTGAGTATCGCTCAACCTGTCACCATCCATGCTGCAGTCTGCAAGGACTTTTTGGAATATCAAACTTTGGTCCTTCTTGTCTAAGGACTTGCAATTCT-CCCACTGTTTGACttcccaatttcttttttcaggccTGAGTCCTGGGGTTTGAACCCACC--ACCTTGatctgagctgcatcctcaggcctttgtatttgttcattattttgagatagggttttgcaaagttgcccaggctgggctcaaacttgtgattctctcgcctcagcttctcagagtgctgaaaAATACAATTGTTAATATGACTAGGTCTATGAGGCTtggtctctctcttcctttccaacTTCGCAAAAAGGGCACCAAGAAAGA----CATGGAATCATTTTAGTTGTCCATCAGTagaggaatgaataaataaaatgtgatacagATACATTGTGGAATATAATTCAtccataaaagaataaaa-gttgcCATTTGGTGCAAAATGGACGGAACTAAAG--GAactcatgttaagtgaaataaaccagac-cagCAATACTAATACCATTTGTTCTCTCCTA---GTGGAAGCTAAGGAAAATGTTCACTCAAATGACAAATAATGATCACTGGG-ATTGGGGAAAGCATGGGATGCAGGTGGGGAGGGGGATACAGAAAAGATGGAT

a score=22452
s chr3           101818393 1552 + 160039680 AAGAAGGGAGGAGAGAGAGAGGGGCT-------GAGAAGAGAGGTCAGGAAGGCGAGAAA----------------GAAAACCCAACTGCT-----------------GTGATGCA----------CAGCTGGGGTTTA--TGTCTCCAGGAGCTGAGCTGCACGCAGTGTGGAAATCCTGGA-ATTGAAAACCATTCCCATG---ACCCCATCCTGATCCCATCACACAGTGGGACCC----ACCTAGAGA---CAGTTGCCCCGTCTACCCCCACCACACCCGTG------CTCACCTGCAGGTGGTGGGTGGTGATGACTGGCCTCCTCCCTGGACACCACACATCCTCCTTCAGCTGCCTCAGGACCTGAAAGCATTGCCTGCGGCAGCCTCCATCCTCGTCCAGCTGCTCAAACAGCACCTGCTCTGCCTGGGAGAAACTCAGCTGCCAGTGATAGGCGGACTGGGCCACCAAGTTAAACCCAAAGGACTGAAAACGAAA-------CAGGATTGGAAAGATGAGAAGCACGAAGCTGGATACTGTGGAGAGCAGCTCAGACAGCTGGAGGGACCCGCAGCCCacagcctgtggtatgcctacgcaatggaatattattcagccaataaaaaggaatt-------gaatccagtcattcacagggatatggatgggattggagtataatatgcaaagtgcaataagctagaaaaagacaaactcatactgactattctcactcacatgtgcatgtcaaaaCATGGAGACCTAATGGGATCATGGGAGAACAGGAAGCATCTTGGTATACTCAGGGAGCAAGGATGGCTCAGACCCCTATGGCAGTTGTTTCTACCCAAATCAGAGTCCTTGAGGACATACCAGCCTTTGCCTAAGGGTTTCAGATAAGAAACCTGCATTTCTGATGGCAGTGATGCTGTGGTGGTG--GGAGGGGGTGCGTGCATCAGAACAGCAGCCCCAAGCAAGCCCCTAATGTGATCAGCAAAGCTGACCG---CTCTATACTGAATGAACCCCCACCTGGTCACCCATACCTTGATGCACTCCACTCTCTCTGGGGAAGGCCATCGCTTCAGACACCGAGGCCACTGGGCTTTCTCAGGCCAGGTGGTGGGGATCTCCACGGTGGGGGCCAGCTCCAGCTCCACCTGGCCTGTGGACGTTTCCATGGCAACCCAAACCGTAGTGCGTTTTTCTAGCACAGTGACTTTGCCTGATGGGAAGGAACAGGAGGGACCCTTGAGAAGAAAGCCTTGCTCTACACAAGCAGCAGTGAGCAAACACTCTGGGAACTGTCCCTGCGACTGTCAGAGTCAGTTCTGTAGACACCAGTCAGCTATGG-----------TCACAGGGT--------CACAAGGAAGG----------------CTCA----TGGCTGGTGGGTCTTTGCT-----TTTACT-------CCCCACTCCTccaaagctttgaagcatatgttattttagggtgtgtgtgtacatgtgtacatgtacatgtgtgtgtgtgttttgctagagaTCATGCATGCGTGCATATATGAGTACtgcgggagactgaacccagggcctcacacatgctgatca----caatacctctgagttataatccagcGGGTTTCCATTCAAATTGATGGGTTCTCTTCTAAAAGCTCAG
s HiC_scaffold_1 111876998 1485 - 233722169 aggagaggaggaggaagagggaggctAGAATAAGAAGGAGGAGAGCAGGGAAGCAAAGAACTGAAAAGGGGAATGGGAGGAGCCAGAGGCTACTTTCCTCTAGTCAGGGTGCTGCAGATGCACTCACTGCTCGGGGCCACATATTTCCACATGAGTAGTAGCTAGTGGAATGGCAGTTGTGGGTATTATGGCCCCTTTCTATGTTCATCACATCCT-CTCCCATTTCTGAGTAGGTCCACTGAGCCCAGAGAGGCCATGGGTACCACCTATCCACAGCTTCCTGGGGTTGCAGCTCACCTGCAGATGGTGGGAGGTGATAACCGGCCTCTTCCCGGGACACCAGACATCCTCCAACAGCTGCCTCACTGCCTGAAAGCACTGTCTACGGCAGCCGCCATCCTCATCCAACTGCTCCAGCAGCACCTGCTCGGCCTGGGAGAAGCTCAGCTGCCAGTGATAGTTTGAACGGGCCAACAGGCTGAACCCAAAGgactggaagaagagaaaaatccagAATTTAGAAAATGAGAAGTACAATGCTTGCTGAAGCAGAAAGCTGTTTTCTGACCT-GAGGAACCTATGG----AGGGTGGCAGTACGCC--CTCCATGG----------GGCCA--AAACAGGAGTCTGGGGAAGGCACAAGCCATCTTGGGGTGGACAGCTGGCAGGGG------------AAAGCTC---CAGCCAGCAACAGA----------------GCCCTCACCCACCTCCAGAGCTCCTAACACACAGACT--GCAGGACC--TGCCCACCAAGTCTCATTCTG-------CAGGTCCACAGTGGGGCCTAGGGCTC-----------TTCCTTTCCAA---CAAGTCTGCGGGGGC-------CCCATGCTTTATG--TCCAG-------AACTGCAGATC------CAGTGAACCTTCGGTGCTGCTTCAGAAGCTGAGTG-------GCAGCAG---------------TACTGAGAT-GGATAAGCTGTTTGAGTCTCTGCGCTGGGGAGCCAGGGTCCCAGTGGTGAATACCTTGATGCACTCCACTTTCCCTGGGGAAGGCCAGCACTTTGTGCATCGTGGCCACCGGGCTTTCTCAGGCCAGAGAGTAGGAATCTCCACTGTGGGGGCCAGCTCAATTTCCACTTTACAGACTGATGTTTCCACAGCAACCCAGACTGCAGGGCTGTTTGTCAGCATGCACACTTTACCTGAAGGGAGATGACCAGACAG-----TGAGAAGACAGCCATGGGCTA------TGGCGAT--GCAAGCATTCAGAGAA-------GGAATCTGTCAGCAGTGCCTGTGAGGACCCCTGACTGCTGCAGGGGAAGCTTTCCCACAGTGTCTACAGCACTCAAAGCAGGGCATCTGCAGCCAGATCTCACTGTTAGCCAGTCGGCCTTTGTTAGGGCATTGCTAGAAAACCCCCATTCCCTTAAAATTTT------TATGCTactt-------------------------------------agtttattttatt-----tca----------catatttg-gtact---ggagattgaaccctaACCTTCACATACATCAAGCATGTGCTATACCCCCAAACCAGaacc-------tttttatttaaattaataccTAATTTTCAGAAGGTTCAG

a score=31665
s chr3           101822928 1494 + 160039680 TGCAGTCAGATGCTTAGTATTGCACAGAAATGTGCTGATACCCAAGGTCTGGGTGTGTGTGTGTGTGAGTAATTTGCTGCTTTAAATAAGTATG-ATGAGTTTGGGGCTGAGCACCAAACCCACAGCCTGAGGTGTGTTTGTCAGGGTGGTAATTT--CTAAGTCACGGAG---GCTCC-TGAGAATGAATCCCTGCCCT----------------------GGGCATTTCATTAC------CA-------GACTAGTGCCCCTTCCCCCTCCCAT-CACCCTCCCATCA----CCACAATGTAAATGGTGACTGGTTATCACTCCCCTCTCACCTTCCCTTGACCTCACCGGCTCACCTGAGAGGTGACAGGTTCTCACTGCATTTTCCACCAGCGTCCGGAACACCTGCAGGACTTTGGCTGGCACAATGTCCCCCTCAATGTTCACATCTGCCTTGTGCCACTGCCACAGGGTCTTCATGAACATCTCAGTCTCCAGCCACTGTTGCAGGCCTTCGGGGTCCCGCAGAGGGCAGGTGAGCTTGGCGCCCTGCACATTGTAGTACCGCCAGCGCTGCCTCTGGACCCCCTTGTACCCTGCAAGGCCTTTCAGTGGGACGGTGACATGGAAGAGGCTGGGGGCCAAAACCTGAGGTCAGAAAAAGAGAAGAGGAGTTGAGCTCACACGCTGGGGAGGTGATCGGCAGAG-------GGGTGCCGACCTGTCCAGTCAGGCAGCTCAAGCAACCTTGCAGCCCTCAGCAATGTGATGATGTGCACAGAAACC---GCCTGGGGAGTGCTGAGATGTACGttttttttgtttgtttgttttttgttttttttgggttttttttttgGCACTAACCCACC-TGGGGCTGTGGCAAACAGAGTGACTTGACTCAAGGAGTTTTGGGGTTTGTGAAGCCACAAGT-TAA------GCATAAAACCCAGAACTCTGGAGGGAACCTGAAGTCCAGGAGAGAAGAAAGGAAAGCAG--AAATCAATC--CACTGAGCCTCACAC------ACAACCCAAATCTCTGGC-TGTGCCCATCCCTTCTCTGAAG----TCACAGCAATAGGTAACCTAGATACCACGCCCCCTGGCAAGCCACCTAAGGCTCCGAGGGGCTACCAACTACCTGGGGAGACTGACAGCACATGGAAGAGC-----TTTGAGT-----GCTTGAAGCAGTCTGTCCAATGG-----TTCTAGTCTTGGGATAGC-------------TGAGCATTCTGGCATT---------------AAGGAGAATGGGATAGGAC--------------------------TTTAAAGTGTCACTCTTTCTTTTCTCCTGTCACGATGACCTAGGGTCAGTATGCATGACTAACCCTTACAGAATTCAAGGTGAGATGAAAGTCTGTCTGTCCGGACAATGTGAGCCATTGAGATGATTCTGAGTTCAGTGGGAAAATGGATGTGAATCCACCCACTCCCACTCTCCAGAAACCAGTTAAGCTGTCG--AGGAAGAGAGCAGGCAGCATACCA-CGCAAAGGACACTGTAAACTGGTTGCTGGTGCAGCTATTCCGGAGGGACCCTGAACTCTGGCTGTGC--CCAGGCAGCTCACT
s HiC_scaffold_1 111879549 1555 - 233722169 TGTAGTCAGATGGAGACTGTTGCAGAAGAAATTGCTAATA----ATATCTAGG-------GTTTGTGAATAACTTGCTCTTTTAAGCAAGTACATGTAGATCCTGAAAAAGGTGCATAATTCACAGCGTGTTGTGTCTGTGCCAGGACAGTAATCTGCTGAAATCCTTGGGCGTGTTCAATGAGTACAAATTCCCATCTTCTCTTTGTCACTACAGAAGAAAGAGCAACTCCCTACATTGTTCACTGATGTAACAAGTACGTGATCCCTGTCTCAGGAAACATCCCATCAAGGTTTTTAGAGCCAAAGAGGAACAGC-ACAATGTCCCTTGCACCTTTCCTTGATC-----AACCCACCTGAGAGGCGGCAGGTTGCAATCGCTTTTTCCACCAGTTGCCGGAATACCTGAAGGACTTTGGCTGGCACAATGTCCCCCTCAATGTTCACATCAGCCTCGTGCCACTGCCAGATGTTCTTCATGAACTGCTCcacctgcagccactgctgcaggCCCTCGGGGGCCCGCAGGGGGTAAGAGAGCCGGGAGCCCTTCAGGTTGTAGTACCGCCAGTGCTGCTCCTTGGCTTCTCTAAAGCCAGCCAGGCCTCTCACTGGCACTGTGACGAGGAACTGAGTAGGGCTCAAAACCTGGGGTC-GGGAAAGAGAATGTGTG-TGAGCTCATTGACTGGTAGGG-----AACAGAAGCCCTCTGGGTGCTGA-CTGGTGAGCCAGGCAGCTCAGGCAACCACTCAACCCTCAGTAATGTGCCCAGGTGGACAGAAAGCTAGGCCTGGGTGTTGC-AAGATG---------------------------------ATTACATCTTTGCTCTGCCACTAATCCATCGTAATGCTGTGGCAGGCACA-----TTAACTCTCTGAGATTTTGGTTTCCCGGATCCACAAGTGTAAAGGAGTGAAGGAAACCTGAAACTCCAGAGGGGACCTAAGTTCGGGGAAgtagaaaagggaagaaggagaacTGGTCTTCAGCGAGTTTTATGTGTGTGAAGATGGTAATTCTCCTCCATTTGCCCACCTGGCCTTCAGAGCTGCTCACTGAGGTGGACA--------------------GATGGAGGACCTGA----CTAAAGGGATCTGGACATCTCAGGGACAGAGTCAGTAAGCAGAAGAACCAGAATTTGAGCTCACATCTTTCCATAGTTTGTTCAGTGATTATTTTCCTATCCTGGGCTAGTTCTCAATTCAGAATGAATGATCTGGAATGTGTGAAAGTCCTGGAAAAAATAAAGGGTGAGAACAGGTAGGAGAAGAGGTGAATGAAGTTTGCAGAatgccttcctttcttttcatctgCACTAATGACCCATTGCCAGAATTAATGACTG----TTGTAAAATCAAAGGTGAAATGAAAGCCTGTTTGCTTAGACAATGT-AGCTACTGAGAAGACTATAAATataatggagaaaagaaacagagtctACCCACTCTTTTTTCCAAGGAACCAGGTAGGCAGTGGTCAGGGAGAAAAGGGTCAAGTCAtcagtacaaaggctagaacaAGTTAGTCAACACTGCTGAATTGCCAAAGGGAACTTGAACTTTGACTGTGATGCACGGCAACCCACT

a score=12652
s chr3           101826671 467 + 160039680 TCCTGTCCCAGGTCTTGGGTACTTCCTAGAGCTCCTCCCACAGGGAGAGCCCCACTTACCTTAATGCTCTCGTTGTGTGTGTCAGAGACAGGCACGGCTTCGAAACGACTGTCCTGGCGGCTGATTTCTGTGGTTAGCAGGTGGATGATTTTCTGCACCTCCTCCATGGTCTGAGAAATCTGCTGCCGCCTCAGGTCCACCTAGGCATGAGGAGATCAGGGAAACATTTAC--------AGAGCCCGAGGAGATACCGGCACACAGGTGACAAAGCATAGGCGCAGTGATGCCTGACC---CAAGGTCAGGGCAAAAATCTTGCCT-CCCAGGACTCCAAAGGAGTCGCCTGCTTAGGCCTGACAGCGACCAACATGACACTTGCT--TGCTTCTG-------------AAACAGGTGCTGTTGCTCAATATTTATCCGGGATTTTTT---------TTTCCTGTGCAAAGACTGGGATATAACAGCAACCAAAGCGAAGGCA
s HiC_scaffold_1 111883863 480 - 233722169 TCCTGACCCTCTTGGTGGGCACTT--TAGA--------CACAAGT-GAGACTTGCTTACCTTTATGTTCCCATTGTATGTGTCAGAATAAGGCACAGCCTGAAATCGTAAGTCTTGATGGCTGATTTCTGTGGTCAGCTGGTGGATAATTTCTTGTACCTCATCCACAGTCTGGGAAATCCACTGGCGCCTCAAATCCACCTGAATATGATAGGATCAGAAAGGTGGTTATTTCCTGTGGTAGCCC--TGAGGCACAGG--CATAAGTGACGTGACAAGGACACAGTGGTGAATGACCAGACAAGTTCTGAATGATAGTCTCGCCTACATAAGACCCCAGGGGAGATG--------AATTTGATGCCAACTGAGACAACACTTGTCAGTGCCTCGGGTGTTCTTTCAACAAATGGGTGCATTCTTTCAATATTTGCCAAGTATCAATTATGTAGTAGTCACCAGCCCAGGTGCCGGGACACAACAGTGATCAAGACAATAGCA

a score=37458
s chr3           101834911 2503 + 160039680 AGAAGCAG-GGGATTCCTTCTGA-------TCAATGGCCATGGGATGGAGAGTTAGAGGGTGTGCCCAGGAGAGGCCAGCCCTGG--CTCACCTTGCTCAGCAGGCAATGGTCTAAGTCTCCCTCTGGAAGAGACTTCATGGCTTCTTGGTCAACCCCCAGTATAGCAGCAACCTTCTGCTTTCTTTCCCGATGGAGGACAAATCTGGTGGGTAGCTTTCCCAGCAACGTTACTCTCTGGATAAAACTTCTCTGGAATTGTGAACGTGGACCAGAGACTTGACTTCTTCTTGCCTGCTCACTGCAGTTTTCCTTTCCAGCATGGAA----GAATTCATCTGCCATCTTTCAGGGAA----CTGTAGAAAGACTAAAAAGGAGACGTGATGAAAACGAGTTGGAAC--------------------------------------------------------------------------------------------------------------------------------------------------TTATCCTGTTTTTTTTTTTTTTTTCTTTATCCTGTTGTCCT--------------GGCACCAGG------------------TGCACCTTGGTGCCCAGTACCT---TACATCTCCCCGTCCTTACCTTGTTGACAGTAAATATCCCTTGGCCCTCCACTCCTGAAAATTCTGCA-ATTGATTTA-CTTCCTTACCATAAACAAATAAGAAATTG-CAAACAAGCCGCCTGG--TTTTTCATCATGCCC---------GGCACAAGGCTTGCCAATCAGATGAGGGC-CAGGAG-TGACATTTAGAAAAGCCTGAGCTCACAGGGACACTTGTGTATAGAGAGGCAAGCTTACATGCTCGCATAGTcacacacagacacaggcacacacacacacacCACATGCATTCACAGAGACACTTGTGTATATAGAGGTAAGCTCACACGCTCACACACTAATACAGACACATACATGAACTCACAGAGACACTTGTGTATACAGAGGCAAGCTTGCCCCCCCCCCTCTCTCTCTCTCTcacacacacacacacacacacacacacacacagagagagagagagagagagagagagagagagagagagagagagaTACAAACAGGTAGATACACGCAGAGAAAAGTAGGGCAGAGAGTCCTGCCTCTCACCTGCTG----ACCTTAGAATGTGATTTCCC-------ACTTGGACGTTGGCATTCAAAATATACTCAGTATAAACAGGCCCCTTAAGAGTCTAGGACAC------ATCTAGTTTTACCAGTAAAACTCATCCTAGAAAA----CCGACAATAAGTTCCCAGTCTGACTGGTTGGGCCTAGTTTTACTCCAGGAGGGAAAATATCCCAGCAGCCTTATCTCCCTAAAGCTCGTGAGTATCACCGTCTT--------TGATCCGAAAGACTGACAGACAACAGAGCTGGCAGTCCAGTTCATGTCTGAGCAAGGCTTTC--AAACAGGCAGC---------------TCTCCAAGCCAGCCTCCTCAATGCTCAACCGCAGCCAATCCAGCCCTTCCACTCTCTC-CCGCGGCCCCAAATTTGCATATCCTCCCAGACAGC-TCCAAGGAGAGCCACATCAGA-------------------CCCCACCCACCTCCCTCCTCCAGGCGCTGGGGCGGCCTTCTCCAGGCTTCATCTGCCAATCCCAGGTCTTATACCAGTCCTGAAAAACTGAGGATCCACAA--AGGTCCCCAGAATCCCCCTCCACGCTGACTGCCTTGACTTTCCACCTGCTTTTCCGTGTCCTGGAAATCCCCTTCTCTTTACGG---CACATGCTCTGAAATGGTAAGGGAATCTCTGTCCCTTGACTGCTGTTACTA-TAGTCATCATTCCGAATCTACCACATCAGCTTTTCACTAGTGAAACAAGAAGCTCTACCCCCTAATCTGCCTTTGGGA-------ATTCTCTTTCCATGTTGCTTTCAACTCTGCTGAAGTCTCCCCACCCCCACACTCACTCCCTTCCCCACACACAT-ACTTTTATTTTCACCCTAACTTCTGCTTTTGCTGGAATCA-CTACTGCATAGTCCCTGTCCTACGGCA------GGGTCTTTCCCAATAACAATAAAGTTGCCCCGGGT----TTCTGGAATTAAATGCCCACACCTTCACTATTCTTGC-TCTAACACCGTCCCGTCTCAGTCA-CTCAGTACTACAG---ATTCAAGT-GTTGTATCTGGAAACTTCTCTTGCTCCAAGA--TGGAAAGATACTTGCCAGGTATGGAGAGGGAATTCTGAATAATTGAACTATAGGAGGAACCCAGAGAAGGAA--AGGCACTGTGAACTCAGGGCAGCTGCCTGTAGATGTATTCCCAGGAGAGCCACAT-CTGAAGATTGGTGTGTTGTGTGAACACAGCTTAGAGTAGCATGGCCTGGTTCCTAGTGCACTGGTAAGGTTCCACAGCACAGGGCTATGGCACAGATGAAGGCTCT----GGCAGCTCCTATCAGACAGGCTGAGGAAAACAGGCTTTACCGGCAGACACAGATCTCTAGTTAATGGGACAACAGGTCAGCGAATGTCTGTTGGGTAAGGGTGTGCCTGAAGCACTGTGCCAGGCCACCAAGAGGGACCT--AGTTAACTCAGGCTTTCCTCCGTCCTCAGGAAATAGAAATCCTCATTTTTT--------TTATAACATGCCAGTTTGAAAAATGGAAACCAGCTTTAGCCCAATTCAATCTGTAAGGACCA
s HiC_scaffold_1 111891605 2437 - 233722169 AGAGGCAGTGAAATCCTTTCTGGATCACAGTTACGGGGCAgaggatggagggagaggagCGCTGTGTGGAAAAGGCCAGCATTTGTCCTTACCTTGCTTAGCAGGAAATCATCTgtgtcctcctctgtgagggATTTCATGGCCTCTCGGTCAAGCCTGAGAAATGCAACAGCTGCACGGGGCTTTTTGCAGTGAAGGAC---CCTCGTGGGCAGCTTTCGTAGCAGCGTCACTGTCTGGATGAAATTTCTCTGGAACTGTGTAAGTGGGCCGGGAACTCG---TCTTTTTACTTCTTCACTCAAGTTCTCATTTCCCAGCTGGAGTGATGAATCCATCTCCTATCtattgagaaattttttttaaaaaagctaaaaatgagAGTTGATGAAACTGAATTTGAACACAAcccatttttttcagttttatttatttattttgttctactTACTTTTATGGCCAAAAGACAATTTTCTGAATTCTATTTTCCATCTAAATACTTAAGTTCTGTACGAGGCCGAAAGCCCTGTAATtggtgtttcctttcctttttaccctcttttttttttttttttttttttttttctcttcttcttcttcttccaagACACCATGATATTTTTACCCTCTTTTTATTTCTGGGAACTCAGTATCTTTCTATATCT-TTTGTCCTTAGTGTTTTGACAGCAAATACCCCTT-GCCCTCCAATCCAGGAAATCCCACAGACGGATTTACCTTTTCtacaataaacaaataagaaattACCCAACAACCCGTTTGGCACTCATCATGATATCTACAAACAAGGGATCAGGACTTGTCAGTCAGATCAGGGCATAACAGCTGGCATTTGGAAAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------gacgcacacactcacacacttgCACGTAC----------------------------------------------ATACAAACAGGCACAT---CACAGACAATAGCAGGGCAGAGA-TCCTGTAGCTCACCTGCTGCCTTACTGTTGAGAACAATTTCCCTCTTTCTACTTGAAGCT--gtgttgaaaataaaatcagtgtaAACACGCTCCTTGAAAGTTGAAGAAACACTCAGATCTGGTTCTGCCAGTAAAACTCATGTTGCACAAAGTTCAGGTGGTAGATTCCTAGTCTGACTTGCTAGGGCTTGTTTtactacagaa--aaagaaatctcgATGGCTTGATTTCTCTGAAGCTGTTAAACATCACAGCCTGGTATCAGATGATCTAAAGAAGTGACAGTCC----AGCCGG-AGTCCAGCTCACTTCTGAGCAATGCTTGCCTAACCAGCCAGTGTCTTCTCAAACTTACCTCTAAGCCTGCCTCC-AAGGACTCAGCGAACTCCAGT---GCCTCCCCACTGACTTGCTGTGGCTGCACATTTGCATA-CTTCCTAGACTCTGCCCTATGAAAGCCTAGGCAGAGCTCCCTGGCAGCCGGACGCTCCACCCACCTCTTTAGTTCTGGTTTATAATCCTGTTTCTACAGATCCGTTCTCCTAATCTACAGTCTGATAAGAACCTTGGAAAC---AGCTTCTTCAATGAGCTTCCAAGTATTCCAA--------GGCTGCCTTGATTTTCCACCTGCTCCTGTGTgttcta----------tttttataaagttcCAAATGCTCCCAACTATTTCAGT--TCTTATTCCGTTGACTTCTCTCATCACTGATCATCTTGCCAAA-CTATCATACCAGCTTTTCACAGACGAAACAAGAGCCTCCCTCTCTGAGCCTATCATTGAAAGCCTATCATTCTCCTTCCATCTCAATTCCAACTTT----CAGCTTCTCAGTGCCC-----CACTCCACCCTCCTCTCCCTTGGCTTTTGTTTTCATCCTCACCTCTGATCTCACTGGAACCATCAATTTGGGAGCTCCTTTCCTCAGGGACAGGGGGAGTCTTTCCCAAGAA-ACCAAGGTTACTTCAGGCAAGGTACCATCATTACAAGTGAAAATCTTTGCCATTTTTGCAGCCGTGACTCCCCTCTCTTGGTCACCTCTGTGCCACAGCCAACCAAAATGGTTGCATTTGAAATTGTCTCTTGCTCTAAGAATCAGAGACATTTTTGTCACATGTGAGCTGGGCCACCT------------------AGGAACCTGCAGGAAGAATGAAGTATTGTG--TTCAGGGCAGCT-----------------------ATCCACATCCTGGAAATAGGGGTATTGTATGAACACTCTGTAGGCT-------CTTACTTCTTA---------TGAG------CAATTTAGGACAGTCTCATGAATACAGTCTCTCAACTACAGTTCCAATCTAGTAGGCTAATGAAGACAAGCTTTCTTGATAGATCTAGATCTTTCATGGCT-GAAGAACAAGTCAGCAACAATTTACTGAGTAACAATGTGCCTAAGGCACTGTGCCAGGCCCCTGAGGGGGGTTCAAAATTAACTTAGGTTGTTGTTCTTCCTGGGGAAATAAGGACCCTCACCTGTCATGAACTAATACTAAAAGTAAGTAT-AAAACTGCAAACCAG-TTTGGATCAATCTCTACCATTAGGACTA

a score=7858
s chr3           101839065 311 + 160039680 aGCTGACTTCAACCCAGAAGGAGCAAAGCAACA--GGATATGTGTCTGCACCTGAGGGAAGCCACCTTTCACAGGCTAATGCTGACAGGAATGCTGAAAAACAGCCCAAT---GAAAACGCGCTA----------GGAGCCCAGAGTCCTGTTTCTATGAAAGCCACCGCTTCGTCTGGCCGTCTGAAGAACA--GTATACTGTTTCCTAGCT---ACTGCGATCATCCCAGCTCCAGAAAGAGCAGCACCCTCAC------------AAAAAAGAAATCGGATGCTTACTTAACAGTAATGGCTCTGTCCCATACACAGCTGGAGGTCAGCGAGAGTGGGAA
s HiC_scaffold_1 111896393 333 - 233722169 AGTTTGCTTTGactcagaaaaagcaaaatatcaaAGCAGAAGTGTTTGCTTCTGAAAGAAGCCACTATTCACACCCTAACTATGTTAAGAATGCTGAAAAATTACCCAATAAGGAGAACGGGCCATGTACATTCTAGAAGCCAAAATCCCACTT-TGTAAAAGTCATGGCTCCATCTGGCCATTTCAATAAAAACGTACATTATTTTCTAGTTGCAACTCTTATCTTCGTACATTCAGAAAGAGGAACAGTCTCTCAACGTCAGcctgaaggaagaaaacaaacgATT------CACCAGTGGATCTACTATTTATACAGCTCATGG---GAAAGAATGAGAA

a score=3979
s chr3           101841149 389 + 160039680 ctcacgcattagcagcatggtccccagtatcctgatgctgagagcaagtatagagccctgaagagatggacactactagtaggtcattgTCTTAGGGAACTCTGACTGTCCTTGGCTGGATTTATGTCGTTCTCATAGCATCTTGGGTTGGTTTTCATGAGTGAGTTTTTACAGAAGAGCAAGCCTGGCTCCTCTTCATACTCTGGCTTTGTGTCCCACCTTGCAATTATTATGATGCTATCTGAGGAGTCTGAGAGTCCTCAATCAAAGGATAAGGCCAAAAATAAGGGACTAATATGTTC--TGGAACCTCCAGCACCAGAATTTAACAACTTCCTTT--AAAAATTATCCAGAGTCCAGTATTTTGATACAGTGGCTTGAAATCAGACTA
s HiC_scaffold_1  96043508 372 - 233722169 CTTACGC--TGGGAATATAGTCCTCGATGTGGTAATGGTAAGGggtaatg-aaaattttaaagtg-tgGGGTCTAGTGGGAGAGGAATATATCATTGAG-GCTGCTGGCCTTGGGAAAGATTAAGGTAGTT-TCACAAAACCCTGGTTAGTTTTTAAAGAGTGAGTTATTATACAAAAGCAAGCCTGGCCCCTAACCCT-CTCTAGCTCCCTGCCTTTCTCTGAAATCTCTTCCACATTTGCTGTTGACGCAGAAA-----TGACATATATGTAAGGTCTTAA--AAGAGCCAAATCTATCTAATGCAAGTTGT-------GAATTAAATAAGCACCTTTACAAAAATGATCCACTCacaggcattttgttatagcagtgcAAACATAGACTA

a score=4461
s chr3           101841268 108 + 160039680 ATTTATGTCGTTCTCATAGCATCTTGGGTTGGTTTTCATGAGTGAGTTTTTACAGAAGAGCAAGCCTGGCTCCTCTTCATACTCTGGCTTTGTGTCCCACCTTGCAAT
s HiC_scaffold_1 162088304 106 - 233722169 ACTGAGGTAGTTCTTGTGATAGCTTGGATTAGTTTTCATGAGAAGGCTGTTATAAAAGAGCAAGACTGACCCCTCTCCAT--TGTGTTTTTTTGTCTCATTATGTGAT

a score=33382
s chr3           101842381 1232 + 160039680 actctcacgttaggaagggcaacatgacacttcatgccccagtcaatgacaggctatcaacaaagtcctactaacaaatgatgtgtgggctg--ttctcatcttctctaatgcagcatccatcatagtcacttcccagtgcatt-tcccctatcactatggcaacc-ccatccatcataagcaactagaacaacagtatccatcagaagggaaaaggagGCCCCTTAGCTCCAGCTCACGTGGTTTCATTTCCGACAATGACCTTGTCTGCTGGTGAATTCGGATCATATTATTACCCTGGATAGCCAGCTGCTGACACTGGAAGGCTCCAAGGACTTCTGGGCTTTTGGCACAAAGGACTGATCAGATTTCAGTTTCCTTTTTAATGTCCAATTAAGAGCAGGATTATATAAAGCC-------------------TCGACTTCTGTAGTCATTCTCTGCCA-------TAAATGAGACTACAACAGTCAAAGAC-AAAGACCACGCTGACTGACACAGGGCCG------------CCAAAGGCCCC-TCCAAATGGATAGCATGGGGACAGTATACAGCTCAGTCACTCCTGCAGCTCT----------------GTGCCCAGGCCAGCTCATATAACTCCTACTGATTAACTACTTCTAGAAGCTTCCACAACCAAAGTATCTATTATGACCTCTTCAGGTTAATAGAGATGACCCAGTTAGAGATACACCCACTGAGGCATGGCTGAAATTGCTATAGAGTTATAATAGCTTTTCACCATGTGCTGGGGACATATATATATAT----ATATATTCTTCA----TATAGTTTATAACTCCAAGTTAGGGAAGAGTGCAGATCTCCCAGAAACG-CTATAGCTAAGGCAGA-AGAATACATAAGTAACACTGCTGTCTGCCCTCATG-GGTCTACGGA-----TAACTTGCTTTTATTGTCCTGGTAAGTGGGTTTCACATTTGCCCCTTCAGAGCCTTAAGTCAAGTCTCTCAG--GACAGCAGAAGGCATCTGTATTCAGCCGTGGGACGGCACTGTCACTCCACACTGAACTTGGTCCTTCACAGCAGAGTTGTCAAT---ATAGGAGGCAGAAAGTGTCTAGTCAAGGCGGAGTCACTCAACTGCAAGGCAGGGTGGCAGCGAAATGTAAGTCAAATACACACGCGCTGGGCTACTGCTGGCTAGGAAGTCACGGAAGAAGG---ATTTACATCAAACCGTGAATGGCTGGAAGACTGATGAGATCGTTTAGAAGGAAAGGATGTTCC---AGAGAAAAGCAGGCGGAAAAACA
s HiC_scaffold_1 111907362 1284 - 233722169 actcTAGCACCAAAAAGGACTACATAAT--TTCAAGCCT-ATTTAAAGTGAGGCCATTAACAGAGTCTTATCAACAAATGATGTGTAGGTTGAATTCTCTTCTTCCATAATGTGCTACCTACCACAGCCACC-CCAAATCCATTCTCCTCTATCATTATAACAACCTCCATTAATCGTAAGCAGCTAGAACAC---TATCAATCaggtataaaaagaaaatct-ttatccCTAGCTCATGTGGCTTCATTTGAAATAATGATCTTGTGTCTAGGTGAATTCTTGCCATATTATAACACTTGATAGCCAGTCATTAACACTGGAGGGATC-AAGGTTGCCAGGCCTCTTGGCACCAAGGACTGATTAGTGTCCAGTTTCCTCTTTAATATCCAATTAAGAACAAGATTGTATAAAtccaaaaaaattacataaatcctcagcttcccagatcaGTTTCTGACTCAATCATTAAATGAGATTAAGATGACCTCAGATGAAAGGCAAAGTTAAATGACAGTGGGCAGGAAATTAATCATACAAAGACTCTATAAAGAAGGAGATGAGAGGAATGGCATACAGGTCAACTACATCTGCAATTCTCTGTGCCTTAGCTTGGATGCTCAGTACAATTCACATAAGTCCTTTTGAATAACCACTTGCAGAAGATCCCACAGCCCAACTATCTTTTGTAACTACTATGGGTTAATAGAGATGACCCAGTTAATGGTATACC----AAGGCATGGCTAAAATTACTACAGAAATTTAATAGCTTTTCTCACCAAGCTGGGGACACAGCAATTTTTCATCATATATGATGAAAAACTATAGTTAATAATGTGGAGTTGGGTAAGAGTCAAATACTCCCAGAAAGATCGGTAGGTAAGGTAGACAGAATACATAACTGACATATCTCTCTGCCCTTTGGAGGTTTAACAATACAGTAAcatggctttattctctttataagTGGATTTTACATTT-TCCCTTTGAAGCCGTAAGTCAAGTCTCTCAGCAGATAGCTGTGTGCAGTTAAATTAAGCTGT--GATAACACT-------TAAGTTCAGTTTGG--CATTACACTGAAATTGTAAACTCATTAAAAAGGGACAAATG-ATAAGAAAGACACAGATACTTAATTGCAATATACAATGatagt-aattataa-taaaatatcaa----cTAGGATA---TGAACTAAAACTTCACCCAAGAAGGGACATTTCAGCTTAGCaatgaaacataaaagaattaGCGAGGGAATTTAAGAGGGAATAATAATCTAGGAGAGAATATTAGGTTCAAAAGTA

a score=32321
s chr3           101859651 1966 + 160039680 GTGCTGTGCATGTCCCTTGTTGCACA---CTGACGACA-----------------CTGTGAGAG--ACTCTCCCCTCTTAAG----------TCATTTA----CAAAGTGCTTAGCGTGTCACTTGCTCGCCACCCTCAGTCT--GTAAAGTTTCCTCGTTGGCTGGGCATGATTTTGAAGTTATTGCTGATGCTAGAATCTCACAAAGAAAAACAGTCCCC---AAATGCATCCAAGTGGGGG--AAAAAAATCGCATGACGCAAGCGTCAAAGGGAGCTTCCCTGCCACAGCCAGCCCTCTGATGAGAAATGCTCCGCTAA----TTCTGCCCTTTATTAGTGAATGA--------------GCACAGACTAAAG---GCACAAGCTGCACCAGC----AACCAA-------------TGAGC-------TGGGAACCAGCCAATG--------------AGCTGATGGGAAGCTGGGAG-------------------------------------CTCTGTACA--------------CATCAACCTGCACCAGAAGATT-CCTGGTGGGGGAGAAGCAAGTGACAGGG----------ATGCTTGCTAGGAAGATGACATCTCGGGGAAGGTCTGGCTAACCCTAGTTAAAGTGCGAGCAGTTTCACACACCTGCTCTTAGGTCCCGAGGAAGG-GTAGCAGC----------------------ATGAGGCACCAGTCCTACAAGGTGGATCTGAGCTGTGCAGCCAGAGG-CGTGGTGCTGAGCTCAGCCCCAGTCCCGAACAAGTCAGCAATGACTCCCTCAACGCAGCAAGTTCTCCCTTTTGGAATCTCTCCTCCA-CCGCCTCTCCCATCTGGAAAGCGTCAGTGTGGGCTGAATAC-ATCTCTG-GTGCTGAAGC-----------------------TGAGGCACTAAGGA--------------------------TGATGGGGCTCTGCTTCTGGGCAGGAA-TGCGGGCTCTTCACTTGATCATCTGGGTCTCCTCATCTGCATCATAGAACTCTTCCTCCTCCTCACTCTCACTGC-TGA--------CCTTGTCCAGGGGCTGCAATGGCAAAGGAGATCTTGTAGAAGTGATCATGACAGGCCTT----AATGAGAA-TTACCACCCAGGCACTCACAGTGCAATTTTGCTGttgttttgagacagggac--ccatgcagaccaagttagcttccaatt-ttctaagtagctga---------gatcaccttctgatcttcctgtctctacctctctag-tgctaggtttacaggggtgtaccaccacactcaggtttagatggttctggggatcaaacccaaggGCACCT------------------------------------AGATGGTTACAGCATGTGTCTCTATACCTGTGGAGGATCCAAGGTCTGTAGAGATAGCGCTTCCTCTCCTAACCTCCTATATGAGTACATTTGAAGATCAGAAAATGTCTCCAGCAAAGGGCTGTTCAGAGTCTCTGGCAATAGCAGGCTCAGGAGGCCTGAGGTCAGGCCTGTGGCTCCAAACACGATGAAGGGCAGAGACCACTGTACTTCCTTCTGTGGAGACAGGAAGTGGAACAAAACCAAACAAACCATTCAG-----------CTTCTCAGCAGGTGACATCAACAGTTGGGTGATCAAGAACTGCCATGTTTACTGTCTAGTCAGCACCTTCCCACAAGAACACCACACACCATGTTTTCTTTGCTCTA-AGATAGTTATCCAGGGAAGTCACATAATGTTTCTTCAGGCATTTAGTGATAGGTCTAAGTGAGCCAAAGGGCTAGACAAGAATATGGACGAGAAGCCTTGGGCCAACCATGTCAGACA------------AAGCATGGCCATGGCTCTCTGTTAGCATGGCAGGCTCACACTGGCAGAGTTCACAGGAACTCTCAAGTCCAGCTTCCA-CCTGAGGGAAAAGTCTGCCCCACACTGATCTCCACATTCTCTTCATATGAAGACGGCCCTGGACTATCTGCTGATAATAAACTTT---------GCAGT---------------------------GGTCAAA----------------TGTGT--------------TATAATG--TTCATCATTGAGAGACCCA-AGATTTAAAAAGTAGAACCCCTCCCCCCAAAAA---GCCCCATGGCACACAGAGTTCATAAACTATTTGAGTTGAATATGGT------------GCAACTGCTTCAGAGATACAAAGAGCATCCTCAGAGAAAGTCGATGATGCCTTTCAATAC--ACAGGCTCCCAACCA
s HiC_scaffold_1 111932295 2224 - 233722169 GTGTTGTGCAAGCCCCTTCTTGTAcaatactgaaaacaaacaaacaaacataaaattgcCAAAGGTAATTCCCCTTATTAAAAACCTTATCTTTTTTTAACATCCAAGTGTTCAACATGTTGCTT-TTAACCATTCTCTACCTTTATAAAGCTTTATTGTTTACTGTGCAGGATTTTGAAGTTATTGCTG-TATTAGACTTTCAGAAGGAAA----TTTTCCTGGAGGTACTTATAATTGAAAACTAAAGGAATCACATAATTTAAGTATCAAAGGGAGCTACCGGGCCACAGCCCTACTTCTGC---------CTCTAGTAAACTGTTCTGGTTCTTAGTAGTAACTCAATAATGTAATCAATGCACATATGAACATGTACACATTCTCTACCATCCTGGaaccaaagggaaaagaaactaaGCAACAGAATGGAAACCAATCTGAGGACTTGATATTAGCAGCTGAGAAAAAGCCAGAGGGCCTTGTGACACCCACACAGTCTCTGAGGACACTTTCTTCTATGCAAAATTAAATGCTGACATCCACCTACATCTGAAGATTTCCTGGTGAGCAAGA-GCAAGTGGTAGTGGACAGAGGTCACACATGATATGAAGTTACAATTTTAAGAACAGTTTATTTAATCCCACTAAAATAGTGAGAAGTTTTACTTATCTGCTTCTAGATCACAAGGAAAGCAAAGCAGTGTCATCAAACTTGTGAACACAAATCAGGCTCCTGCCCTGGAATGTGGACCAGAACTATATCGCTGGAGGTCATGATTCTGCACTGAACTTCAG-----------------ATG------------------TTTTTTCCTGATGAAATATCTTCTCCAACTTCCTTTGTACTTTAACAAAAATCATTCCGTGCTGAGTACCACCTGTGTACGCTGGAGCCAAACTTGTCTTTCTCAGCTCTCTGAGGCTCATGGGAGAACCTGCCTTGGTCAGAGGCATAAACGACGGTCCTTTGGTTTTGATCAGGGAGCTAGGGCTCCTCACTTTATCATCTGAGTCTCTTCATCTGCATCATAaaactcttcctcctcctcactctcACTCCCTGAAGTCCCCTCCTTGTCAGCAACCTGAAATGGGAAAGGAGG------AGAGG---------CaggatttctaaaatgaaaaattatcacCTACATGTTCAACTGACAA-----ATGAATTTTTGTGACATCTACTTCCCTAAGGAGCA-----GCccctaagtattttaaaaatctaatggaTTTTcagtcatctttttatttttttga----acatCACTTGCTGTTAGATTTC--------TACCGCtgctttccattctatttaatcT--------AACCCCAAAGACATTTTTTCCCAACAACTGTCACCATCCAAGCAGAAGCTGCCAATGGATAGGAGGAGCATCAACATACTTGCGGTGTATCCAAGGTCTGCAAAGACAGGGCTTCCTCTCCTAGCCTCCGATAGGAGTACACCTGAAGGTCAGCAAGTGTCTCCAGCAATGGGCTATTCAGAGTTTCTGGCAATAACAAACTCAGGAAGCCTGAGGTCAGGCCGGTGGCCCCAAACACAATGAAGGGTAAAGACCACTGCACATATTTCTGTAAGGGGATG--Gtgcaaatgaaacaaacaaa--actcaggGTCAGTGAGTGTCCTCATCAGATGACGTCAGCAGTCCTATGACTGAGAACTGCCACAGCT----TCTAATTTATGCTTTCCCACTAG---ACTATAC------TTTTTCTTTCACTACAGAGAGCTACCATGGGAAATTAC--------------GGCATGTAGAGACAGAACCGGGTAAACCCAAAAGC-ACACGGGAGGGCAGAC-AGGAGCATTGGGCTGTCTACTGCAGAGAGTGGGCACATGGGAGCTGAGGCCCGGCTGTTTCTGAGCGGGACATGTCCACA--------------AGGAAACCTTGTGTCCAGCTTCCATTCCAAGGGAGTAGCTTAT----CAGTGACCTCCATACCCTCTTCACACAAGAGACACCCCAAAATTTTTGCTAGCAATAAGCTTTAATCCTTTGGCAGTTGCAGCTGATAGGAGAGACTTCTTTGAGGTTGAAGTTCTCAATCCTGGAGTCTGTCCAAACCTCCCACATACCATGGCTCCATAACAGAGAGGcccagaaatgaaaggaataaaa-------actgaaaaagtcgtCCTACTACATATATAGTCTGTAAGCTACTTGAATTGGA-ATGGTAAAGGTGAAATGGCAATTGTTTCACAG--TCAAAGGATAATCTTAGGACAAATTCATATTCTCTTTCAACACCAACAGGTTCGAAAACA

a score=15947
s chr3           101862299 934 + 160039680 ACAAAATCCAGGAGAGACCTGCAAGGGCCCCTA-GGGCTTTCACAGGACCTGGGCATTTAAGACCTGGAGGGTTTTAAAGG-GGTCATTTGTTTCCCCTGATCCCCACCCTTGTTTTGGGTTATAGAATTTTTAAAAATGCCCAAGAGGACGGGGCATGTGTGCTGCTAGGTGTGCTTTTCTTCCTGTTTCCCCCCCCCCAGTTGtgagc---------acatactcaacctacttctaaaacacgtctcatctttagagctgatgacaacgcctatctcttacagcgatggtgagggttatatgcagtgcaaacactg-cacagcatagaagattgatcg-tacacactaattgacttctgaatgttgatGGAAAGGGGAATGCTGGTATCACCAGCCCCTCCAGTGGGTCCATGTGAGCAAACAGTCAGACGCACCAGGGGTAAAAGC--CCCAGTCCATCCACCCTGATGGAGGGCAAGGCTCTGCGTCAGACAGGCACAAGCTCGGCATCTGCGCAGCCGCTCTTGGCT----GAGCT---TACTCATTGCCTCTCTCTACAC-AAAGCACAAACG-------AGTGGGGAAGCAGAGGGCCACAGGCAGAGACAGGAGGTACAAACCAACCAGGGAGGGGACGAAGGGGGCAATGATCCCACCGACTCGGGAGAACATGGAGCACGCTCCCAGGCCAACGTTTCTGGAAAGCAGGAGAGAAACAGAATTAGTTAAATGAATACAATCACTCAGTCTCAGGGGGACAATGTAAAGATCC------GGGGTAGGAA------GAACACAATGAGCCAGACACAGTAAGTGCCTAAGGACAAGGACCc---cattagacctttctacgaggcgaggcgttccgtaatgacatcaccctgtgcaacagcactagacacacgaggcgtctcagcacttg-aatgtgactcatgagaataaggaaaggaacttttatttta
s HiC_scaffold_1 111935249 898 - 233722169 ACTAGAGCAAGGAGAGACTTGCTGGGGCGCTGGCGTTCTTTCATAGAATGTAAGCATTTTAAGACTGGAAGACTTTCAGGGCTGTCATTTA---------ATATCTCACCTTTAATTGGActacaaaattt--agaaaataccaATGAATCTGAGCAGACACACATCCAGGCAATATttcct--ctagttttctttttcaggtgGTATGCTTTGGGGAAAGATGCTTAATCTATTTATGTAGCATTTCTCATTT--------GATTACCATGTGCATTATATACAACAATA-TGTATAAAGCATTTAATACAAAGTCTAACATGAAGCAGACACTTAACAAATACTTAATAGCTAACTTCTGAA-------------GAGAA-------ATCAGCTGACTCTCCAGTGAAAACAGAT----AAAGAATCAGACCCATCAGGG-CAGAAGCATCCCAGTCTATCTGTCCTGATAGAGTAGTAG--TCTTCATCTAAGATGTGCACGGTCCACATCTCTG-----ACTTTTGACTTTAAAAGCTATATACTCATTACCTCTCTCTACGCTAAAACACAGGCATTTCCAAAGTGCAgaatcatg-----aaaaacaaaacaaggaggtACAAACCAACCAGTGAGGGGACGAAGGGAGCAATAATCCCACCAACTCGGGAGAACATGGAACAAGTTCCAAGCCCAACGTTCCTGAAAGGCATAAGGAAA--------AGTGGAATAAA---AATCAGTGAGTTGCAGGAGGA-AATGTAAAGACCCCGTAGAGAGGTGTAAAGGACCTGGACAGAAAGAACATGATGCAGGG------CAAGCACAGGAACCCATACAGCAGAGCCATCTATGA---GAACTCTCTCGGGCTGGAAATGTTCTAGG--ATTGCACTGAACATGGAGAGTCACTGAATAAGTGAAATGTGGCAAATGAGCATGAGGAACTAAATTTCTACCTTA

a score=11640
s chr3           101864479 173 + 160039680 AGACCCTTACCTGATGACAGTGGGGTACAGCTCAGAGGTGTAGATGTAAACAATGTTAAAGGCAGCACTGATGGTCAGCTTCCCCAGCAGGGACAAGGAATGGCTGTTGACCACTGCAAACACGCCTGTGTCTGAGGAGGGCAGA-CAATATTAGTGAAGTCCACAGTAAGAAC
s HiC_scaffold_1 111937381 173 - 233722169 AGACACGTACCTGATGATGGTAGGGTAGAGTTCAGAGGTGTAGATGTAAACGATGTTAAAGGCAGCACTGATGGTCAGCTTCCCCAGCAAGGACAGGGTACGGCTGTTCACTACTGCAAACACCCCAGTGTCTGAGGAGGACATAGCAATCTCAGTG-AGACCACAATGGGAAC

a score=11368
s chr3           101866932 555 + 160039680 ACATCTCTACTAACAGGACAGAAGATTGCCATCTGGAAATTTAAATTCACGTGGAGC-ACACAGAGACA--ATCATCTAACTTCCAACAGAGTCCAAAGCTGCAGGAGGATTCCCACGT-GAGGTGGAAGACACCTCCATCAGTAGCTCATTTGGGGAGGCTGGCTCTGGCCACAGGCCAAA-------------------GCCAGTCCATCTGCTGCTTGAACCCTCTCTCCTCTGCTCCTGCCAACGCACCTGCAGTCACTTCTTCAGGGGGAACCCACCTCTCCCCTAAGATGGCTTATGTCAATAGCAGACAGCTTTCTTTGTTAAGGTTCCTGCGTGTGCAGCTGCTGGGCTGCTGGCTGTGTTCCGGAAGGCTCTGCAGCCACTGAGTGGTCCCCTGCCTTCCTGACCTACATTCCTAGTCATTCCCAATGAATGGGCAAAG-TGTTGTTTGGGGAAAAAGGCAAAGTGATTTAGAGGGGAAGTTAAAATGAAATTACAGTTTTTAAGAAGTGGATTTGCATAGCGCTTGTTTC-TTTCCACATACCAAACTCCATGAGGTCATAATTTAGCTC
s HiC_scaffold_1 111939789 522 - 233722169 ACATCTTTAACAATAGGATAGA-GACTGCCATCTTGAAATTTACGTTCAGATGATGTGATACAGAAACTTTATCATCTAAATGTC--CATAATGCAAATC---AGGAAGAGTCCCATGTTAAGGCTCAGGACACTCCTGCCCTGAAC--ATTTGGGGAGCCTGTCTCCGGCCACACACCCAGTAAATACCCCCAATAGTCCAACAGCCCATCTGCTGCTTGAAACTTCTCTCCTATGTTCCTGCCACCAGAGTTACAATCACCAC----------GCCCACC--------ATGGGAGCTTATGTCATGAG--ACCAGCTCTGTTCATGA--GACCTTGCCTGTGCAGCTGTTGGGCTGTTGGT----CTCCTG--GGTTCTTCACC------AGGGTACTTTACCTAAAAATCAGGTATTACCAGCTATTCCCAATGAATGCTCAAAGCtactgttcaaaaaaaaaaaaaaa--gatttaaaagagaagaaaaaa-------------tctaaaaaat-gacTCTCAAAACACAGGTTACACTTCAAAGTTCTGAACTCAATGACCTTATAAATTTATTC

a score=4017
s chr3           101872689 81 + 160039680 TATCAGTGCTGAAAGTTTTTGGATTTTGGAATATTTTAGATTTCAGTTTTTTGGATTAGGGATATTCAACTTATA--ATTATA
s HiC_scaffold_1 107443103 82 - 233722169 TGTCAAAGCTCAGA-CTTTTGGATTTTGCAGCATTTCAGATTTCTGATTTTTAGATTAGGGATGTTCATCTTGTATCATTATA

a score=40974
s chr3           101875101 1274 + 160039680 tgagtcacctcagtagccATTAGTCATGCTTTAAAGTG-ACCAAGAGCATAACCACTGTGCTCAACAGTGGATGTTATTCTTATGGTGTTGCTGTTGTTATTATTACTAA----CCTTGGGGTACCACATGGAGACATTTAGGGGTTCCTAAGCT----ACCTCTGAGAACCAGAGTCC---AACTGCCAGTCTCAAGACTGGCCAGAGCTCGCAGTTTCATTTGCAG-CTTGGAAGGAGTGTCTTTTGGGTGCAGAGTGGGTCTTAGCCTTCCCTGTTACCAAGTAAACAACTCTAATGTCGCCAGtgctgcatcccagataccccagatggtagcttaatagcctgaaagaattaatagcacacctctgagcacattattcacccagagaatagttcaggcaatgcaaaggatctggcccattatAG--CCCGCACAATTGCTAAGTAATATGCAATCACAGGAATGAAGCGCGGCATATGGTAATCCCTTTACTATATTGAGATTCATTGTAATAAAAGTGCTGTTCAAAACCCTCATGGAAATGTGAAAGGCATACCTTTCTTTTCCGGAAGAAACATCACAATAAGACAGGCCAGTCCTCCAAGGCACAGAAACGCTGCTAGTGTCCGCTTCCGACCAAACCTAAACAATAGGAGGAAGTCACATGTCTCTCCAAAGAATCTTATAAAGCCATCTTCCCTCTCCT-GCAGCTTTCCTACTTAAATGTTCTCAATTTAATTTTTTTTTTGAGTGGGTGGCAAATGTAGCTGGTCAGGCGACAGTTCAGGATATAAATAAGCATGAAAAGGGGGACTCACTGGATAGCAGGATCATATCATGTACACAGGAaacaaac---cattg----tatttccaagagcatgcac--tgtggcaggaactgttttaaatgcacgccacctattacctcactgaatcctaataacaaATGTGTAGGCTTGTGTGGTGACACTCTCCGTCTTTTAGAGACTCAATCCAATAAAGAGAACAGAGTCCACTAGTTTGTCTTATTCTCTGGGTATCCAATTCTTATGGTGTTAAAATTTTTAAATGCC---AAGGTTTGTTGGTCTTTGTCTCAAATCTTTAGAAAAATAAACAGGAAAAAACTTCTTGCTCGTGGTTTCAATTTAAGTAAAAGGTACTGTATACT-----TCAACTTCCAAAAAAGAGGACCAGGCTTAGAACAAATGATGTAACAATAATCTCCACTCTCAAGCCAGCAACAGGCCAGCTCCTCGGCTAGGA-----------ACTTGTAATTCTGATAACTAATTTGTCAGGG
s HiC_scaffold_1 111945750 1198 - 233722169 TAAGTTTCCTAAAGATGCTTTGTTCACATTTTATATAATACTAAGAGCACATCTATC--------CAGTGAATATTACTCTT-----------GGTGCCGTCATCACTGGGGTGCCTTGAGAGTAAAGATGGAAACACTGAGGGCTGCC--AGCTTTCCACCCTTGAGACCCAATGTCTCTGAACT-CCAGTTTGGTGATGGGCTGGAATGAGCAGTGTACTCTGCAGACTTGGATGAAGTTTTTCCTGAGC-CAAA------CTAACCAGTCCTCATCATCAAACAAACAACCGTAGCATCATCA-TACTGCACCCCGGCTACCCCAGATGGTAGCTTAATAGCCTGCAAAAATTAATAGCACACCTCTAAACACATTATTCACCCAGAGAATACTTTCAGCAATGGAAAGAATCTGGCCTATTATACACCCCACACGATTGCTAAATAATATACAATCACAGAAATGAAGCATGGCATATG-TAATCTCTCTACT-TATTGAGATTCATTGTCATAAAAGTGCTGTTCAAAACTCTTGCAGGAATTTGAAAGGCATACCTTTCTTTTCTGGAAGAAACATTACGATAAGACAAGCCAGGCCTCCTAGACACAGAAATGCTGCTAAAGTCCGCTTCCGACCAGACCTAAGTAACACAAACAAATTATACATTTCTCTTAAGAATCTTATAAATTAATCTCCTCTTTCTTCccaatcttcctttttaaatgatCTCAGTTTCATT-------------------AAAT------------------------------------------AGGGGAAACTTGCTGGATGAAAGGAT--TGTGATGTATACAAGAAAAGAATACACAATGCTTCCATTTCCGTGAGTGTTCACTATGTGCTAGTCACTGTTTTAAATGCTTTCCACCTGTTATCTTATTTAATCCTAAGAATAAACCCATAGGCATGTACCATTGCACTCCCTATGTTCCAGATAACGAAGCTTAAAAAGAGAATAGGGTCTTCTAGctcatttcattttctagttACCTCAAATGTATTGAGTTAGAActtttaaacactttaaaaactc-----cctttttc--------ttaaaaatataagtgGGAAAATATTTCATGTTGGTGGgctaaaatgaagagaaatacaaTGAACactgaaaagtaattttaaaatcagagcaCTAGACTTGAAAAAGACAC--TAACATTGTGTCCCTTTCT----------AGAGGCCAGGTACTCTGCTAGGATCTTCAACATTACATGTAATTTTGGTAACGATACTGGCAGGG

a score=31561
s chr3           101877675 1041 + 160039680 ATACACAAAACTCCAGGACTACTACCATAAAAAGTGAGCT-TAGCCGCATTTAGCCTGAGAAAAACTCTGCTGGGCAGTGCTGGGCAAACACTGTCTAAAGCCATGGAGCAGAGCCGT---TGGGTACGCGCATGTGGAAGGATGT---GTATGCTACAA-CGCACAC-CTCTGTGGGGTGCCTCTTTGTCATCCATACTCACCATCTTTGGTTAATCAGGTAGATGCAGAGAGGGTAGGATGGAATCTCTATGAGGCCAGATAGAGCCAGGTTGGCATAAATGCTGCCCCCTAGGTCACCTGCACTCAGGGTGAGGCCGTAGTACACCAAGCTGCACACAAACCTGTA-TGGGAGATCAAAGGACTGAGAGGTGAGGGGAAAGTCTATAGGACAGGAACAACACT-----------TTTCCATGAGAGATTAA------ATGGA--CCACGCAGCACTA------CTAACCCATTTGATGAGTTTTACTCTCCCACCGAACTTTCTGTCTTAATCTAAATTTCTATCCTATTAAGAAACAAAAGCATAATGGGGCTTTGGTAGTGATTTATGTCTACACGTTCTACAAAGCAAATGGATGTATAGTTCCTGCTTGAGAAAAGACATTGTTCCTGCCTCCTCAAGCGTTTCTGCACCGCAGTGAAAACAATGACCCTATTCTTACTTCACTGGGTCCAGCAATCTAGGGAACAC-----AGCCTGTGGCCTTGTGCTGTTATCAGAAGGGCAGGACAG--AGCCTCCTATGGGGAAATCCAACAGAGGATGGCCAG-------------AGAATGGCCTGGATCCTCAGGTGGGTCATCTGCGGGCCACAGA-GCCTGGCTCTCCATCCCCCTAGAACCCTAGTCACTTCCAATCA-AGGTCTTCAGCAGGCACACATACTAGAGACCAGACTAGAGAAGAAAAGGCCAGGGTCACAGCAGAGCAGGACCTGCGGGGAAGATCAAC-AGGGAGGGAGGCTCTTGAGAGACATTAACTCATTTCTGCACACCAGCATTGAAATCCACACTTAGG----AAGCACTTCCCAG----------------CTGTGGTATTGTGCCAGACACATGCCTGTCTCC
s HiC_scaffold_1 111947703 1079 - 233722169 ACACATGATAATCAAGAAATATTACACTAAAAAATGAATTGTAACTGAATTTGGTCTGAAAGAAACTAATCTCCATGGTGATTAGCGGATACTGACCATGAACA---AACAGAACGATGTGCAGGTATTGGTGTATGTGAGTATGTTGAGTGGGTTACAAGTGTGTATTCTCTACGGGGCACTTTATT-TCATCCAAACTCACCATTTCTGGTTAATCAAGTAGATGCAGAGAGGGTAGGATGGAATCTCTATGAGGCCAGACAGGGCCAGATTGGCATAAATATTTCCACCTAGGTCACCTGCACTCAGAGTGAGACCATAATACACCAAGCTGCACACAAACCTGCAGTTGGGGGCCAAGGGACCGGGATGTGAAAGACAAGAagaca--acaagaacaaaaagtacATAAGAAATTTCCAGAGAAGATTAAAGCAGCATGGGTTCAATACAGTACAATACAATCTACTACAAACAATAAGCTTGATAGTTCTGCTAAGCTTTTTGTCTTAATCATAGTATCTGttctaagaaaaaacaaaaacataataggGCTTTGGAAATGACTGGTACCTGTCTGTTTTATAAAGGAAACGGATGGCCAGCCTCTGCAAAAGGAAAGACATTG----TGTTTTCTCAAGCATTTCTGCACTGAATAGAAAACAAAGACCTAACTCTTACTTTATTTAACTCAACAATTTACAGAACACTTGCTTACATAGGTTGTCATGGTGCTATTAGAATGACTCTGCAATCAGTCTCCTATGGAGCAAGCCAACAAAAGGTGACTGGAGCACACGGGCCAAGAAAACTCTGGACCTTCAGG-GAGCCACCTGCAGACCTGAAATGACCAGCACTCCAACCACCCGGGATTC-AGACACTTCTTAGCACAGGTCTT------------------------AGaacagggaagaaaagaggcgGGTCACGGAGAGGCAGGCTCCTCTAGAAGGATCCACTGGGGATGGGCCCTCTGAAAAGCTCTTGATGTATTTGTGCACACCATTTCAGGAA--CACACTGAGGAATCAAGCACCTCCAGGGTGCAGGGAACACCTCCTATATGACTGTG--AGTTGCTTGCCTGTCTCC

a score=26004
s chr3           101879879 2214 + 160039680 AAAGCAACCTCTTACTGACACTGGAGTAAGCCGTCTACAGCCCTGTGGCTGCAGGTAACCCTGATAAACAGGTAATCAAGAGACCTTTAGCATTCAAAT---AGAAGATTCCATGACATCTCTCAGAATTACCAGATGAACATCAGGATCAGGGTATGTCCTAGGAGGATCCGGTAACGGAAAAGATCCAGGAAGCTTCCAGTTGCCCTGTAGCTCCTGTTGGCCGGGTGTGTTAGTGAGAATGTACACTTGAGCTTGCGGTTCCTCTTGGCAATGAAGTACAGAGCCTCTTCCGCCTCACTCAGCCGACCCTGGGAGTATAACCAACGAGGTGATTCAGGAATGAATCTGAAAGACACGTCATTAAAGGCTGGATATTCATACAGGTGCGCGTGCAGAGGAAGGAGACAAA-CATCCCCTTGGTAGGTGGCTTCCCTCACCATGGGTCACTTCCTTCGCAAGGATAA---CATGACTTCCCCAGTGACACA------GGAGAGAGAACA----------------------------AGGGGGCTCATTTTTATCCGTAGGA----ACTGAGCTTTTCAAATACTGGTTTCAATAAAGGTAAATAGCTTCCATTTCCTTTTAAATAAGTTTCAGTAAGTGGATGGCAAATCTCCAACACTGGAGGATGCATGGTCCTCACAAAGCCTAGGCCAGGCTCAACTCTGAATCCCCACTAGATGTTGTTGATGGACAATACGGCAGTGGGTATAGCCTAGCTttgtat----ttttctgatctcact----gtgtagaaca---------------ggctggcct----------------caaacttgctacaaagcccag---aaaacctctgaactcaagaccttccag----------------agtgctgcgattataggctcgttccgctatgccTAAACAACTAGGTTCTTAAGCTCTGGAAGTCTAACACTGAGATAGAAATGTTTATCAAGGAAACGTTTCAAAGGCGCTTGTAACATAATGGCATGTTACTCA-GGAGGACACAGTATTGTAAGATTA--CACAGAAGCACGAAACAGTGTGACAGATCTCTTCACCTGTGACTGCTCATTGCTTCAAATACTCAAACCATCCAACATACCAGCTTTAGAGGGTTGGGAGGAGCTTTCCTGTTTTACAAGAACTTCAAAGAGCAAGAGTTGCTGGCAGTTAACTTCTAGTTACAGAACAACGGGCATTTCCTAATACAGCCACAAGGTGTCGAGCCACTCTGCGCTAGGCCACTAGGGTCCGTACAGTTTTAAAACTTAGGCACTGCATGGACTTTGCTTCATCATTCTGTTTTAGGAGGGCTTCCCAAAGGTGTGGCAGAATGGAAGCCTTTAAAAAAATTATAgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgGGGGGGGTtatatgttgtgttcttagaggccagaggaggatgtcaggtcctctaatctatctgctctttgccttattcctttgaggcatggtctctcactgaacctggaactagtctggtggccagcaattttccctgggtcacgggtgcatgtggccacatccagttgtttacatgggtactagaattcgacctcaagtcttcaagcttgcaaagcaagcacccttacccactgaaccgttgtctttccagACTGGACACCTTCCTTACTAAACACAACATCAAAATACTTTATTTTTTAAAAGTCCAATCTGACATTTTCTGCCTTAAGTCAAATTTTGATGGATAA-AATAGATATT--------TTTTTTCAAAATTCTGCTACTTCTCTGTAAGGATGGTGAG--AGCAA-----------------------TAGTAGACAG--CCGCTCTATCAGTAACCACTGCGTGAGCA---CCACTCTATGCAGAGTAGGATAACGGGTGCTGAGAGG-AAAGATGTCGGGACAAAA---AGAAGTTCTTACAGAACATATCCAATGGGGACAAGAACACTCACATACAACTCTGGACTGTCAATCAGA------------GCCATTTATAATGTCTTGT--AAACTTCTTTAGCCACTTCCTTGTTGCCATTTA-----AATACTGATGTTGACTAATACATAAACAACCGAGTCAACACGGCCCTGTTTGAAAGCTGCATCTGCCAACAATCAAGCTTGACCCACTGACCCAGATTCGTGCAGAGCTA----CTGTGTCCGCGATCTGATTGAGTCTTCGTGTAAACAAAAAGAACTGTTAGGAGACAGCTAAGCTACCTACGCAGAGGAAACCT---ATGACGAGAATTTAAACTGGGCAGAGTTGGAAGGAAAGAGAGAGAACCAGCAGGAAGTGTATCAAAA
s HiC_scaffold_1 111950998 1946 - 233722169 AAAACAACCTCGTGCTGACAAGAGATAAAAC--TCTGTAAGTCTGAAGATGGAATGGACT---ATCAACAGGC--TAGAGCAACCTT--GTGTTGAAGATCAACAAGGCTCCAC----CCACATATACCCACCAGATGAACATCAGGATCAAAGTGTGTCCTAAGAGGATCCGGTAACGGAACAGATCCAAGACACTCCCGGTCTCCCTGCAGCTCCTGTTGGCCGGATGTGTGAGTGAGAATGTGCACTTAAGCCTGCGGTTCCTCTTGGCAATGAGGTAGAGTGCCTCTTCTGCCTCACTCAGTCGACCCTGGGAGTACAACCAACGGGGTGATTCAGGAATGAATCTGAAAGAGATGTCATTAAAGGCTGTGTATTCATATAGGTGCACgtgcagaggaaggagagaaatcaCCCTCTAAATGCATGCAGTCTTTCACCACAGCTGGTTTGGATCTTATGTTTAAAAGCATGATTCTCCCAATGAAATATaaaccagaaagagaaaaatagctaCTTCCACAGCGTCCCAATGTTAAGGTACCCTTATTTATTATTGACACAATACAATGCTTCTAAAACAC------CATTAAAA--Aactagtttgaattttttttttgtcttgttcatttttatcggtaccagggatcgaactcacgactgcaca-----cttgcaaggc--aggc---gctt-------------------atgctgctgatctaaagTCC--CAGcccctttaatttatttttatataaaattatcttatattaattaaattaaagaaaatttaaattacccCTTGGCAAGTCTGTAGTActaaataatgtaaatttttcATAAAGTACAGATCAGGAACACAGATCTAAATCCTAGCCAGTTGTGGTTAGAAAAATACAGCAGAGGTAATAGATTTTTTATATT----CTGAGGATATAAATTTTTTAActc---------atca--gaaaaacaaatgtttaacaAG--------TCAGA---GTTTTTAACATAGTGACATGTTATTTATGGAGTAGA---TTTTTTAAGACTATgcgtagaaataaataaaagtttgttaCATCT------CAGCTATTTCTTACTGCTTCAAATA-TCTGATCACCCAGCACACCAGCTTTATTATGCCCTAGTGACCTTTCATGATCCACCAAGaccttaaagaataaaattattttcaggttaATTTCTAGACACTAAACA---GTTATTTGCTAATACAACCATAAAATACT--GTCACT---------GCTATC----TTCACTCAATTCTAAGGCTTAGACATTA------------tctatttttctgtct------------------gtttACCATGGTGGAGGAC-------------------------------------------------------------------------TTCTCAAAGAC---AAAACGATGACAG------------------------------------------------------GAACATGGAA-----------------------------------------------------------------------------------------------------------------------------------------------------ACCTTGTTTATT-AATATAACATCAAG------TGTTCTTTGA---TCTAATTTGACATTTttggcctaaaataaaacctgGAGGAATAATATTAGCTGTTTAAGGgtattttttagaatttcctgTGCCTTTTAAAAAGGACAGTGAATTAGCAACACACACTATAGGCTTGGATGCTTAATGGACAGCTCTAGTCTGTCAATAACCATTTACTGAGTGCTTCTATTTTGTACAAAGCAATGTAACAGATACTGAGAGGCAAATATCACAAACCAAAATCCAGAATTTTCCTAAGAGTTTTGTTGCTGGGGATGAGAGTACTTATGCATAACATTTGACTGTGAACCAAACTATGGACAAAGCCTACCTACACAATCTTGGAAAAATCCCTTTATTTACTTCCTCACTGCCGTTTGATCACATTACTTACAT--GCAAatgaaataacaa--ggaaaaacacTATTCTG-TTGAAAGATGC--CTGGTAATCAACCGGCCCTACCTGTGTACACAGCCACACAT-GAGCTACTACCTGATTATATCACctgattaagtttt---------aaaaaaacaagatataaaagtgTTGTGATGGCTACATagtgaaaatatataataataaaaagtaaatctAGGTAGAActgcaaggaga-aaaaagaaccacTAAGAACTATACCAAAA

a score=42076
s chr3           101882243 3085 + 160039680 CATCTAGCACTAAGTAGTAACTAACCCAGACTATAGACTCAGGGGAAACAAAGACACAGTGGCTCAGAGCCGCCACTGACTTTGCACTGCTTTTGAAGGAGAGAGAAGAGCCAGGCTAGGCGCAGAGCTATGAGCTTTGTTAAGTATTTGAAAAGAAAACTCATTTTATTCACCAATACGTGCATGGATGCTTATTAGCTCAATGTAGCATATGAAGTACAGCTTTACTACCTTTAAAAATGCACAATGTGCAAAGTATAAAGT----GCTATTATTTCC-CTTTATAATAAAATTACCTCCCCACAGTTCACAGAACTCAATCCTTTAATGATTTCTTTCTTTACTACAGGTTAACCATTCTGCTGCATTCATTTCTGCATTCACTATTCTCTTGTTTACAAAGACA-CATAGAAGCCAATTTCCGTTCAGATCTCACCAAATCTCAACTTATAAAC--AATAAATAGCTACTA----AATGACAGAGCCGCTGGAGTTATGGTACTGCCACAGGTCTGTCTCACTGCATGCCACAGAAGAAACCCCAGATACCATTGGATGAACTCTTGGTTTACATAAAGGATTTTAGT----------------CTGATACCTTAGAGAAGATACAGCTTTTATTTGGCACATTAAAGCTTG--GTGAAGTGGGCTGAACTTGGTGGCTTGACACCATAATGTGACACTTGGATGATTGTTTGTGGAGCCCACTCTGGTCTGGGAGGGAATTATTCTTGTATTGCTTTGAGC--------------ACTCCTGTGGACAAGCTGT-CTCCTGTAGACTCTGTACTTAGAGACCCTGAAATGAGACTCCTGTGCACAATGGACAGATGTCACTACATG----GTCAGCCTTTACACTTGGCTCCACAATATCAGACCTCAGTCTCACACCCAGCCCATGGTGAACCCAGCTTGAAGATCTTTAAGCTTAAGG--------------------------------------------------CACTGGGTTAAA------------AGGAAGAAGA-------------------AAAAGAAAAAGGAAAGGAATTT--CCAATAGCCCGAAGGCCAAA-TGCAGCTAACTAAGAAA-----TTAAACAGGAGATACCTACATTCTAAACTAATTAACTAGCATCTCTCTCTTCAAGGAGCTGGCAAGAATTGCA----TGTGTGCA--GTTTAGCTCTTCCCAGAATTCACTGCAGGCAAGCTCCTGGCAGATGGAATGCTGCTTGCTTGCTTTCTTGCCTGCTCACACCCTTCCAAGACATTC---CTGTTTATGGAACACGAATTCCAAGGAGACAAGACTACTTACAAAGATAAGAGAAAGACCAATGTTCCCTGAAGGTTGACCAGAACAGCTAGGGTCCTCCAGGAGCGGATGAAGTACCCTAATAGGGCATACTGCGCGATGCCAACAGCGAAGAAGAGACCACCAATCGATCCTAAAGCAGGGAAAAGAGAATTGTCACTGGAGAAG--ATCACCCATGGCACCATTCCCAACCTGATCAGTGAGCGTGA---CCTCCTTGTGAGACATCAATCAGTCTTGCCCTACTAAGTGTGAGAGGCAGAGGAGGGGCAAAGACCACATAGCACCCAGCTTCTAACGATATAGCACCAAGAAGGGCCAGAAATCTGTGGAAATGGTAGGAGGGCAGCTGAAAACATGTACCCTGTGTGGACGAGAAAGAAGT-------TCAAGGTTTTAGTCAAGCGCTTTCTATC-------CTGGGTGTTGCAATGACTTCTGTCTGCATCTGGGGCTGAGGCTGAAGATATATTTTTCAGTGGGGGTGATGTGGCTTTTGGGT-CATGCAGTTCCTGCAATGCTGGTCTTAATCTTTTAAAGGGGTTG----CATTCTGTT---GTTTTATTT-------ATTGTTATG-----TGTGTCTCtatgtgtgtgggcttgcatgt-gccacagtg---cacttgaggaagtcggaaggt--gacttgtggtagctggttccttccttcc--------------------accacgtgggt----------------tccacagatcaaactct--gataggcctgtcagagagggtctgaacgcaccaagcca------gcttccagctccTGGCTCTTAATCTTTATTACAGAGGCTATTCATGAAA---ATATCTTGAGCCAc--------ccccactccccct---cttttctctacttaatttatcaccatcagatatatgactctttacattttcttgtttctcacctgcctctcccaagtaggaacacaatctgtttgaagcacgtatttttgtcGAAACACTAATGGAAAAATATCAACCACAGAACCGTAAAGAAGCCTATGTTTTTT----------------------------------------------------------------------------------------------------------------AAAATAAGTGTTGAGATAAAGATTAAATGTGCCAGTTCGCCTGATGTTCTTGCAAATT-------CTGTACCTCTGGCACTTTCTGTACCTGCTTTTATCACTGTGGGCAGGTTATTGAGT-----TTTGTTGAGAATAAT--CTATTGTGTGTGATGTTTTATGAAACAAGTA----CCATTATTAACCGCACACTGAAGCAAGAAAATAGCTTGCGGGTTAGGGGAAGATGTCTCCAATACAGCATGTGAGATTAT----GGCAAAGCCAGGCCCTGTA--CAGGCTCCACTGCACTCTGA-----GCTGTTCCCATCTCCTTTCTCATCTCTATGGAAATGCAGGGTGttttattgttttctgagacagggtttctctgggtagccctggatgtgctggaactcactctgtagaccaggctggccttgaactcacagagatctgacatcctctgtctcccagaagttgggattcaaggtgtgtgccatcattgcctggcAGGAAAGGCAGTTTTTAGATGGGCTTTGCTGGTTTTAGTTTTATTTTTTCTATGATAATAAGTATTTTCTTTGATCTTTTTTCATAACTTATCACTTTATGAAAAAAACATGGTGACTTGCATATTTTTTTTACCCTAATTAGGAAAAGAAAGAGCCAAAAGGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCAGCATTCTGAAAGCAGAATTCAGCAAGTGAGGGAATAGAGACAATATGGAGGCCTCTGGAAATTTGAGACAATCAATAGCTAGCTGTTTGCGGACTCATTATAGTATGTCAAATAGCACCTGGCTGGCTTCCAAGGATACGGCTTCTTTCTCTGTCGCTCAGTATTTACCCATGACCACAcagtcaggggatag---tataggc---------------------------tggtttcagagggatcaaatttaaaccccaattct
s HiC_scaffold_1 111954073 3034 - 233722169 CATCGAGTACTAAGTAGTAACTAACTCAGgtcacacac---agaaaaagaaaagcagaatgactCAGGACTAC--------------------TGAAGGAGAGAAGAGAGCCAGGCTGATTGGAGAAGTATGAGCTTCATTAAGTACTTGAAA-GAAAactcattt-gttcacaagtaCTT--ATGAACGCTTATTAACTCAAGATACTATGTTATATATCCACTTATCACTTTCAAAAATGCACAATATATAAGCTAACAAATTACTGCTATTATTTCTACTGTGTACTAAA--------------------------------------------------------------------------------------------CAATGTTCTTGCTTTCAAAGATAGTATGAAAGCAAATTTCAGTTCAATCTCTACCAAATCTCgattaaaaagctaaataaa-aaccACTACCTGAATTAAAATATCACCAGaagtactgttttat------tttgtgccaCTTTATGGCACAAAAGAATGTT--GGTACCATAAgctgaaaattttgtttatgccaaaaattttaatgattaaaagTAGAGACCTGAAACCTTAGGGAAGAAAATCTTTTCAAAGGCCACATAAGAACTTGTGGTAAAATGGGCTAAAGTAGGTG-----------TGATTTT---TTTTGGCAGTTATTTATGCAGCCCCTCTTTGACC---AGCGAATCATCCTCTTAATACCTTGAGTCTCTGTACCCTAAGAATTCTTCGAATATCTGGCACTCATCCAGAGTCTACCTGTAAGGTCCCTGAGCTGAGACTTGTCTGTAGGATGGAATGTTGTCACTATATATCCAGTCAGTATAAATATCTGACTCTACAATATCACAGCTTAGTCACATACCTAGCCCATGATCTGATCAGCATTATGATCTTT---TTTAAGGGTCCTggcaatcgaactcaggacctcacacttgccaagcaggtgccacACCACTGAgtcaaatccccagcccccagcaggaCAATCTTTTAGCTTTAGGTATTAGCTTTAAGAAGAAATTGATTTGGTTAAAATTCTGAAGGATAAAATGCAGTCTATTGATAGACTGCTTTAAACAAAGGGTACCTGCATTCTGAATTAATTAAGCAACACCTCTCTTCCCAAG-AGCTGTCAAGAGTTGAAACATTGCTTGCAAAGTTtatctcttccccaaagtcaggaGAAGTAAGCCCCTGAAAG--GGAATA----------ACCTCTATGCATTTACCAAAATTCTCTAGATATTTGTTCCACTTACTAAATTGAAACCCTAAGAAGA-AAAACTACTTACAAAGATAAGAGAAAGACCATTGTTCCCTGTAGATTGACCAGAACAGCCAAAGTCCTCCAGGAGCGAATGAAGTATCCTAACAGGGCATATTGGGCGATGCCAATTGCAAAGAAGAGGCCACCAATGGATCCtaattcaggaaaaagaaaactgtcacTGGAGAAGGCATCGTTTGCGGCACGATTTCCAATCTCGTCATAGAAC-TGATCCCCGCCTTGTGAGATTCCA---------------------GCGAGAGGCAGAGTATAAAGGAAAACTCTACACCACAAAG--GGTGATCATAAAATAtggtgaa---tttaaaattt----aaatggaattttaaaatttaaaaata------------gttcaggaaagacacattgccattaagtCTCTCTCAAAATACTCTCTCCCACccaaacacacttttcccatcattcttgccactttctgaagc--------agtttacCTTTTTtggt-----cattctgactttgagGTGGAACCAGAAGTtgcagatctgg--tgaa-----taaagtggatgaagACATGCTGTCACAGttttttttcacagaaattgctgtaaacattttgaatcaatgta---ggacatggaggcagccaggatGACACACCTAAGCACTCACAAAAATaggacttccagaa---------cttcttCCAAATGTGGCAAGAAAGGTGGATCAGGTGAGTTAGAAGTGAGGGGGAGTCCGTGGTTGAGGTTTGGAGATATTTTTGTCACATGGGTAATAAAGTTTTTAGGTCATGTAGTTATTTCAGTGCTTG--TCTTAATCTTTACAACAGAGCCTATCCTTGAAATCCTTATTTTAAGTCACAGTCCATTCTCTAATTCTCTTGCACCCTTCCTTACATAATTTATAACTATCAAATGTAAGAcagtttacatttatttatttcttgcctGACTCTTTCAAGTA-GAATATAATCTTTCTGAAGCATGGATTTTTGGCAGCACAATGGTGGAAAAATATCAACCATGGAACTGTAAGTAATCTTACATTTGTTTTAAACAAGCattgagggctgggggtttagctcagtggcacaagtgtctgcctggcaagcacaaggtcatcagtttgatccccaggtacaaaaaaacaaaaacaaaaacaaaaaaacaagtattGATACGGGCATTAAACACAGTGGCCTACCCTATATTCTTGCGTATTTCCCTACCTCTACCTCTGATATATTTCCTTTTTGCTATTAGCATTAT---TAGTCTACTGAGCAGTTATTTATTGAGTATAATGGCT-TTGCATACATTGGTCTAACAGGCAGGGATCATTCATTATTAATTGCATATTACAATGAAGAAATTACTCAGAGAGTAAGGAAAACTCCCT------AAGCAAATGGAGATATATGGGGCAAAGCCAGGACCTGTATGCAGG-TCTATTTCAATAGAGGGCCTGCTTTCTTTaccatttttctctcttgtatgGAAAGGCAG----------------------------TTCTGTGAGCA-----------------------------------------------------------------------TCCCATAGTAACTGGGCTTTGATGACCTTACTATAAAAATTTGCCATAACAA----------------------------------------TTCTGTAA-AGCAAATGTTTTCTCTGATTGCTGTCTATTCCTTATCACT-----------ACATAACAACTTGTGTA--CTGCTTGCCTTAGTAAGAAAAAGGAGGAATCAAAAAGGGG------------------------------------------------AACTGATT------AGTAAGGGAACAGGGACAGTGT-GATTTccctagaaatttaaaataatcaatagCTA-----TGACTCATTCATTATAGTACAGCAAACAGCACCTGGA-----CCCAAGAATAAAGCCACCT--GTCATTGCTCAGGATGGTTCCAAGAATGCAACATCCACTGATAGCAATGTAGGCAAAGAGAGAACACCCCAGAGGGAGAGATGGTCTC-GATGGACCAAGTTCGGACCCTAAATCT

a score=69724
s chr3           101896247 3190 + 160039680 aatcttaaaatt---gtaaaaatTTTAAACACTTCTTTTTTACTGTATGTGTGAC-CTTGGGAGGATGTTGGAATTATTAGAGATA---CAAAATATGGCCTCAATTTAGAAATTTGGCACCAGTAAGAAATGCCCCTACGATGCCCT----CTATCGACCAGAGAGAACAGTAAGAACGAGGAAAGCCACGAAATG-GAAGTCATTAGAATGAAGTAAG-GGGCCTCAGGAGAAAGAGTTCC-------CTGCCCTTGCCCTGTTTCCCAGTGTCGGGGAGAAATTGATGAATGCTGTTCTGAGCAAATGGGCCACTCGCCACTGTCATCTGGCCACCTGTC---------------------TGTGAGGCAGACCCAGGGAAGAAAGACTCTC-ACCAGGGAATATGAACATCATGATCTCTGACACCTTGGAGCGCACATGTGAGAGGA---CAAGTGTGATGCAGGCTGAGCACCCTCAAATCCGAAAACCC-----CCAATCCCAAATGTC--CTAAATTGGAAACGGTTGTAGAGGTGACACAATTCCTCAAGTGGAAAAAAAAAAATCCATTCTTTACCTGG----ACATGACGGTTTGAACCCAAAATAGAGA--CATTAAAAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAGGCATT-----------------ATGCAGAAGAATGTGGAATCCGGAACACTTCGGGTTCCCAGCACTAGGGTACGGAATACCCTACTACACAGAAAACCACAGGGGAATGGAAGGGAAGGCGTGGCCACCCTTCACTGCTCTCTTCACCTGTAGATCGCAAGTGCCTCAAGTCCAAGTGTGTTTTCTGACTCT---------------CACTGCAA----------------------------------------AAGTGAAGCAGTACCTGCAAGTGCCCAGTAGGCGGTGCCCACGCACTCATTTAGCAAGACAAAGGCCACCAGGGACATCCCTCCATTCATCATGCCCACCAAGAAGCGAGTTACTGCAAAGAATTCATATGAGGGGGAAAATCCATTTGCGACAGCAAATAAGATGTCAAGAGCAAAACCTGGGGAGAGAGGAACAATATTCAATGACCCAGAAGCAAAACAGCATTTGGAGAAAATAATAAATTATATTCATCAGTTTGTAAAATAAACCTTTGTA-AACTTAAATGCCCTGAGATATGGTTTTTTTTTCTACCAATTTGCCTTGAAAATGAGAAAGAAAAACCAAGGCCTGTTTTCTTTGTTTTACAATTTCTGTCAATCACACACCACTTTTCAGTTATATGTAATAATGCTAGGAATTGAAAATCCTCGTTCATATTCGGCCTGTCGAGACAGCTACGCCAGGTCCTATAGAGCTCATTTGAAATAAATCAACA---------GAGAAAAATACAGGCAATGGAAGGGAAGGCTGTGGCACTCCTTCGCTGCTCTCTTTAGGAGCAGGGCAGAGATTACAATTTGGGGGTTGCAGAAAGCACTGTCAA--AAAAAAATGTCTTTAACAACAATATCTGGTCTTAGCCAGGTGAGCTCATTCCAAAAAACTGCTTGGCCGGAGTCGTCAC-GAGTGGCGCGTGGCTTCGCGCCAATGTAATAAACAGAAGCTCTCTGTCCACCTGCGAACTCACAGAGGACTTTCAGAAAATAACCCCCCCTTAGTATTTCCATAACAGTCCTGGGAAAATAAAGCCTCTTATTCAGTGTATGCATATGGCGACAGATTACCTGTGAGATAGACTTTTCTCCTTCCAAATCGATCTGAAAGCTGACCAAAGGAGATAACACCAACAAACACACCACTGAAGAAAGAGGAGCTGGCCGCGCTGACTTTGTAAGATCGGTTGGCAATTAAAAACCACTACAAGAAAAAGAAAGGAAGAAACAGAAAGGGGACAATTTAGGCCACAGACAG-CAATATATGCAGTGAACT------AAAT-----------------TAGTCTTGTATAC---------------------------------------------------AGCCCAGACTGGGACACCTT-----------------ACTGCATCAA--------------------------------------------------------------CCGCTATTAGCCAGAATCTGGTATAATATTCATCTTAGACCATATCCA-AGCT-------TCAGAAATGCTGGAAGCCATTGCTG--GAGTGGTTTATTTCCAGATTATTCTTCATATACTTC-TAACAGAACGGAACACAGCATGTAAGTGCTAATTGCATATCTGATTGTTGACTGCGGCTTTATCCTGCATCCATGGCAGTCTTTGGAGAGGAGATGCATTG----CTCCATTTCTGTTTTCTTGATGCCTGCACATCCCAGGGCACATTTGAAGTGACCAGTGAGTAATTCTTTCTTTTAACAGACTAGTGTGTTTAAAATTCCTTGAATATGTTTCTCAAAAAAAAAATTAAAATGGGAAATggggctaaagagatggttcagaggttaaagatcacttggctg---gtcttccagaggacccaggtttgattctcagcacc-------cacatgacagctgacaactgttggtagcgccagtt-ggttccagggatccaatgccatcctttgggttctgagggcactgcacagacatccgtgcagtagaaacattcCGTGTGTGCTAGACTCatatacagtggaatattatccaacctttaaagctaacacag-tcggattcatgctacagcccagataaactctgaagacactatagtaagtgaaacaagccaggcatgaaggaataaatactgcataaagctagtcacatgaggtacctgtaagag--------acaaagataaggagt-----agtggttgcagggactagaggaggaggagcaaga-gagccactgtttaatggaatcagactttcctcta----------------gagatggacagtggcaatggctgcaggatagt--gtgaagatactcaagggcacagaattatacccttaacattattctttatgttaagtggataatgtcagctttgcgccatgcgtatttaccacaaCAGGAATTCCTAGAGT-ATGATTATCTATTGTAAGACAATC-------ATGACCTTAGATTATGATCAGCACCATCTTCTGACACCCTGTCTAGG-----------GATGCTTAGTAGTAGAGATCA----GTACAGTATGTCACAGAGATAGCAACCTCGGAGGGTA-CAAGAATCTTCATATTTCATCTTCCCAGTGCCCTT-------GCAGGGTCACCCAAGGGCCCTTCTTATTGAGAATTCTCAAGTGGCACTGTTCTGGGCCGCCTGACTCTGTTTTTATGTT----ACCCCTTCTCTAGGCTCTGACACTATTCATTAGGGCCCCCAAAGCACATCTtctctctctctctctctctctct
s HiC_scaffold_1 111961441 3343 - 233722169 AATGTTGAAAGTCACATGAACtttttataatcatttatttCACTATATAAGTAGCTCTTGAAGAGCTGATGGGTTTGTTGAAAAGAACTTAGAACATGGCTTCAATTAGGCTATCCAGCATCGTAAAGTAATGCTACAATCATGTCATGCTGATTTCAAT-----AGAAAAGTAAGAATGAGAAAGGTCACAGaccaagaattaaagaaaatggaataagCAGGTTTCAAGAAAGGTGTTTCCAGTACTCCTGTCCCTGTACTGTTTCCCACCCT-GGGTAAACAGCAGTTGATGGTGTTCT-AGGAAGTGG---ATGCTCCACAAAAATCTGGAGACCGGCCATGGGTGCACGACAAGCTCACTGTAAGGCAGTCACC----ACAGGAACTTTCTACTGCAGTATACGAGTAAAGTGAGTTCT-------TTGACCTCatacagaaaaggaaagcaaatctAATACAAATTGAGCATCC-CtaatatgaaaattcaaattctaaTTCTAAAAGGCTACAAAACCTGAAACCTTTTAAGTACTGACATGAG--ATCAAATAGAAAT-----------TTCTACACCTGATCTCATGCGATGGATCACAGTCAAAACAGAGGTGCgctaaaaatactgtataaaattactttcaaacTGTGTGTATGAGATATATACGAAatgtaaatgaattttgtgtttagactaGGGTCCCATCCCCAAGATATTTGGTGATGTATttgaaaatacttcaaaatctgaaatcttAAACACATCTTCTCCTTAGCATTTGAATAAGCAATTTC------------AATCTGTAGTTGGATGAGA-------------------------------------------------CACCTCAAGTTCAAATGTGTTTTCAGGCTCTAGGGTTAAACTGGCTCCCTGCAAGGTTTTTTCTGCAGCCACTCACCCCGCCCAGATCTGCATGAATTTAAGCAGTACCTGCAAGAGCCCAGTAGGCGGTGCCCACACATTCATTTAGCAGGACAAAGGCCACCAGCGACATCCCTCCATTCATCATGCCCACCAAGAAGCGGGTTATTGTAAAGAACTCATATGAGGGAGAAAATCCATTTGCAATAGCAAATAAGATGTCAAGAGCAAAAcctagaaagagagaaacaatatTCAGTCATCCAGAGGCAAAACAGCAGTTGATGAAAGTAATAAATTATATTCATTAGTTTGTAAAATAAAGCCTCATACAACAGAAATTTCCTGAGCTA---GTTTTTTTTCTA--AGTCTGCCTTGAAAAC--TAACAAAATGCCCaggtttgctttctttgtttcacAATTTCTGTCAATCACA---ATTTTTTCAACCATTCATAACAGCACtagaaactgaaaatcttagCCCACACTCAGCTTGACGATCGAACTATGCCAAGCTCTGCAGCG-TCATTTGAAACGAATCAGCACCCGGAGATGTGAAGAACACACCTTA-------GAAGACTGTCTCCATCTTTCGCTGCCTTCCTTGGAAACACAGCATCAACTGCAGCTTAGGGATTGCAGACAGCACCATCGCTTACAGAACAGTTGTTAACACAAGTCTCTGGCCTTCACCTGGTGGACTGGTCACTGAAAACCACCCGGTCAGAATCAGCTCTTACTATAGTGCACTTTCTCACCAGCAGAAGGGAAATCAACTCAGTCCCTACACACCAATTCTCCAAG-------AGGAAACAG--TCCCCTTACCATTTCCTTAAGAATCTTAGGAAAACAAGATCTCTTACTTAGTTCACGAACACT----CTGGATACCTGTGAGATAGACTTTTTTCCTTCCAAAGCGATCTGACAGTTGACCAAAAGAGATGACTCCGACAAACACACCACTGAAGAAAAAGGAGCTGGCGGCACTGACTTTGTAAGATCTACTGGCAATTAAAAACCactagaggaagaaaaaaata--------aaagagaacctTTTAGATCACAGGGGGAAAATGGATGGAGTTAGCTattaaaaaatcaacatacaGTCAGATGTagcagtgcacacttgtaatcccagcacttgggagactgagacaggaggatcactgtgagttcgaggccagcctgggctactgtcTGAACTCCATGGTAAAACTCTATCAAAAccccaaagacaaaacaaaacatatcacAAATGTATGGATGCTGTAACTTCAACATATGTCCCACTATTAACCAGAATGTGGTAGAGGATCCATCTTAAATAACATTCAGAGCCCGGATAATCAGAAACAACAGAAACTATTGTTATTGTGTAGTTCTACCCCACAGGACTCTACACAAGTCTCATTACAGAAGTACACACAGCATGTAGAAG-TAAT----TATGTAATTGTTGACCAT-CCCTCACCCCAAGTCCCTGT--GTTTTCCGAAAGTAAGTGCCCTGTATCTTTCACTTCCATTTCCCTGATGTCCTTGAATCCTATAGCATA-CAGAAGCAACGAATGAACCATCCTTTTGTTCAACAGATTAGTATATTTAAAATTCCTTGAGTATATgcctt--gaaaaaaattaaacatttaaat---------caaATTATCCAATAACTG-----CACTTGTGTATATATGTcccaaagaattgaaagcagggGCACAGAAATGTATTTGAACATGAGTATTCAGAAACATCACTCACAGCAGTCAAGGTGAAAGCATCCAGCATCTATctatcagt----ggatgaatggataaacc------------aaACAGGCTGT-----------TCCTACAGAGTGCAGCAATACTCAGTCTGGAACAGGAATGAAGTTCAGATTCATGCTACAACCTCaat-aactttgaaaaaattatgctaagtaaaataagccagatacAA---GATAAAAATTTCATGATTCCGTTTATATGAGGTACCTGCAAGAGTCAACtttacagagacagaaagtaaaacAATGGTCACCAGGGC-AAAGTAGAAGGGGGAATAGGAATCACTgtttaaaggaagagagtttGCATTTAGAATGGAGAAGTTGTGGAGACAGACAGTTGTGATGGCTGCAAAACAATGGGTGAATGCACTTAATGCCCTTGAATTGTACACTTAA-------ATGCAACTAAAATGGTAAACTTCAGAT------CATGAATATTTACTAcaatttaaa-----aaagtaactaTCTTCTACTTTTGGGCAACTTACAAAAACAATCACCCATTTCTTCAAGCACTAATACTGGAAACCTTGCCTAGTAATGAGTTAGCGGTGTTTGGTTCCAAGGATAAAAGTGTACC-TGTGTCACAGAG---GTGATCTCGGAGTGCACCAAGACCACTCACTTTTCCTCTATCCAGTACTCTTCCATATAGCAGCAACA-CCAGGTGTC---------------TGTAAGATGATACCGTCCTCAATTGCCT-------TCTCTACCCTCCAAACTTCTTTCCTAGACTTTGAGACCAGCCCTTATGG-CTCAAGCGCACATCTGATTTCTCTCCTTCCTTATGTTT

a score=6070
s chr3           101896568 412 + 160039680 TCTGTGAGGCAGACCCAGGGAAGAAAGACTCTCACCAGGGAA--------TATGAACATC-----ATGATCTCTGACACCTTGGAGCGCACATGTGAGAGGACAAGTGTGATGCAGGCTGAGCACCCTCAAATCCGAAAACCCCCAATCCCAAATGTCCTAAATTGGAAACGGTTGTAGAGGTGACACAATTCCTCAAGTGGAAAAAAAAAAATCCATTCTTTACCTGGACATGACGGTTTGAACCCAAAATAGAGACATTA---AAAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAGGCAT----------------------------------TATGCAGAAGAATGTGGAATCCGGAACACTTCGGGTTCCCAGCA-CTAGGGTACGGAATACCCTAC
s HiC_scaffold_1 216639746 428 - 233722169 TCCCTAAGGCAGACTTGAGGAA-ATAGAATCTAATCAGGGAACAGGTCTTTATAGCCATCCTCTTACTATGTATGCTAACTCAGA----ATATATGTTATG------GTTGTATGGGCTGAGTATATTTAA--CTGGAAAGTTCCAA-------------AAACCTGAAACTATTTGAGTACCAACGGGAATGCACAAGTAGAAAATGTGACACCTGAACCTT--CTTGACGTCACAGT-------CAAAACAAAGGCACCCCCCAAAATACTGGGTAAAATTACCTTTGGACTGTGTATATAAGGTATATATGAAACATAAGTTGATTTTGCGTTTAGACTTTGGTCTTATCTCTAAAATGTATCATTTCATGCAAATATTCCTtttcattatgtatatgtaaacaAATGAGAAATCCAAAAGACTTCTGGTCTCAAGAATTTTGGATAAGGGATATGCAAC

a score=7027
s chr3           101896666 295 + 160039680 TGCAGGCTGAGCACCCTCAAATCCGAAAACCCCCAAT---------CCCAAATGTCCTAAATTGGAAACGGTTGTAGAGGTGACACAATTCCTCAAGTGGAAAAAAAAAAATCCATTCTTTACCTGG----ACATGACGGTTTGAACCCAAAATAGAGACAT--TAAAAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAGGCA-----------TTATGCAGAAGAATGTGGAATCCGGAACACTTCGGGTTCCCAGCACT
s HiC_scaffold_1 126690133 308 - 233722169 TACAGATTGGACATCTCTAATTC--AAACCTCCCAATGTGAAAACCTTCAAAACTTCAAAGTCTAAAACTTTTTGAGTGCCAGCATAAAGCCACAAgtagaaaa-----------ttccacacctgactTTATGTGATGGGTTATAgtcaacacacagacacactaaAAATATGCCATTAAATTACCTCCAGGCTATGTGTGTAAAGTATATATGAAACATAATTGAATTTCAAATTTAGACCTAGGTCTCATCCCCAAGAGACCTAAACATGTCTTTTCAAAACAATCTAAAATCCATAACACTTTTGGTcctaagcatt

a score=4929
s chr3           101896706 235 + 160039680 AAATGTCCTAAATTGGAAACGGTTGTAGAGGTGACACAATTCCTCAAGTGGAAAAAAAAAAATCCATTCTTTACCTGGACATGACGGTTTGAACCCAAAAT--AGAGACATTAAAAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAGGCATTATGCAGAAGAATGTGGAATCCGGAA
s HiC_scaffold_1 102037048 230 - 233722169 AAATATCTGAAATTGAAA--TGTTCCAAAGTc--caaaattttttgaa-agatgACAGAAAATCCACACCTGATTCCTACA--ACAGGTCACAGTCAAAATGCAGGTGCTCTAAGAATGTTGTGGAAAGTTAACTTCAGGCTACGTGCATAATGCAAACATGAAACAGAGATGAATTTCATGCTTAGATATGGTTCCCATGCCCAAGATATCTCATGACTGTGTGtgtattccaaaa

a score=4010
s chr3           101896812 135 + 160039680 CATTAAAAATGCCGCATAGCATCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAG-----GCATTATGCA---------------------GAAGAATGTGGAATCCGGAACACTTC
s HiC_scaffold_1 229952096 156 - 233722169 CAGCACAAATACTGCATAAAGTCATATCCAGGCTACGTGCGCAATGTGTATATGAAACATAAAGGAATTTTGGGTTTAGACTTGAG-----TCTCCATGATGTCATATTATGTATATGCTAGTATTCCAACATTTGAAAAGTCCCAAATTCGAAACACTTC

a score=3813
s chr3           101896833 126 + 160039680 TCACCTTCAGGCTATGCGCATAAAGCAACTATGAAATGTAAATGCATTTTGTGTTTAGAATTGGGCCACATCTCCAAGGCATT---------------------------ATGCAGAA-GAATGTGGAATCCGGAACACTTCGGGTTCCCAGCA
s HiC_scaffold_1  11745908 154 - 233722169 TTGCTTTCAGGTTATGTGTATAAGGTGCATGTAAAACATAAATGGGTTTCCTGTTTAGATTAGGGCTCCATCCCCAAGATACTGAATTATATGTGTACAAATATTCCCACATCCAAAACAAATCAGACATTCAAAATACTTCTGGTCCCAAACA

a score=35432
s chr3           101899508 1459 + 160039680 TGAAGGTCTAGACAAGACA-GTCCTAAGGCTCATGACAGACAGGGTATAATATATGTCAGAATGTCATGTAAGAG----TCATGAAGAGAGCTCTGGCACTTGGAGAAGAG-TTTTGTTCTGTGAGAAGTTCATTTATTTTGGATACACCGGTAGGTCTGCAGAAGAATGTTCAGCTCAGGAGGAATGAGCGTGGCGACATATTCTGAAATGGACAAATGAGACAGTA---GATGCCATGCTGTCCTGCAG-AAGACAGCTCAGCATCCATCACAGGGTCAGCCCTGCCCCTGTGACAGACAG---ACAGGAGCAGATGGAATT---------ACCCTCCTAATTCAGATACTTGTTATAGTCATCATGTTCTTAATGTTCATGCTTACATGCTTTTAAAAACTGGCTTGCAGCTCTAGCCTTCCTTTCTCTGTTCTTTAGGGATTGCCAATCTGTTTGCACGATGAAGGCACTTAGGTGGACACTGAGCTG------GCTCTGTTAACCAGGGAGA-------------------AGTGAGTATTCCGTTGACTGTATTTACCAAATTTCTCATATCCACTAAAAAGGCTACAGTACTTACTATCCCTCAGCAACTGAATAGCTGTCAACTTGGACAATGATTTTAGGAAGAAATGGCCCAAGGGACAGTTAGCCAGCAAATTCCAAATCCTGATTCTCAGGCTGCCAGTTCCAAGTGTCAAAGTAATTTCTACTAATCTTTCTTCAAGTCAGTGTTGGT-TAGGCCGTCACTTCTCCTGGAATTCATTCAAGAATGACCAGAAAAGCTGAAAAGCAGATTTTTTCCCCCCAATGCTAACTAGAGAATGGCTGGCTAGAAGATGAAGTATCTCCCTAGCAGAGTCCCATGAAAT-GGAGTGGCAGAGGCAGG-----------------------CCATCGGCTGACAGACAGATTTCCA-------CAACCCTGACCT----GACTCTG-TTTTATGTGTTTTGTCTTCAGTT-------TTTCTAAAGTATCATTTAAATTCTTATTACTTAGCTACCATGTGATCTAAAAGGTTTTACTTTGTCCAAACTCAACTAAGATAAAGTAAGACAG-GATCCCTGTA-TCTTGAAGACGGTTCGCAGATTTAGC-TACCTGGAGAGGGTTGGA---------------AGACTAGA-TCAGTTGCTAGCTCATTCTCTTACCCA-ATGGTTGATA------TTTAGTGTCAGGATAAGAGCCAAACCAGGAAATCATCAGGACACAAGAAATTAAACTATAACAAATCAAAATATAATGATGACTCTGACATTTTCAAGAAACA---TTTTAATGAATCTTTAGATTTTAAAAATCA-AAATGTATAAATCATTCAAGTCCTTATTGGCTGGAGATTATTAAAGTGGTTCTTCCCTCATTTTTTGTTAATGGCAGGCCAAATTTTAAAGCAATTAGAATGAATATTCTCTGTACACTAATTCATTTCAAATTGAAGAATTGCTTGCAAATCCAAAATATGAAGATCCCACTTTCTCTCCATGTATATTAATAGGAAAGAA
s HiC_scaffold_1 111969053 1473 - 233722169 TAAATGTATTAATAAGCCATGACTTAAGGCTTATTAAA---AGggtatatttt------taagtttatataaaagagacttttaaaaagagttctggcatttgaaagagaaattttgttttgtaaaaaatGAATTTGCTTTGGATATATAGATAGTTCAGTGGAAGAATTTTCAACTTACGAGAAATATCTATGGTGATAGTTTTTCACTTCTAAAGATGGATCAGTATTAGTTATCAGATTGTCCTAAAACAAGAAAGGATTGTACCCATCACAGGGATAGCCCTTTTCCTAAAAGGGACAATGAATAAGGCctaattgtatttgtttttacaaCCTTGAAAGTCAGTTGACT-TTATGTGTTTCATGTTCTTAGTGTtca------catgattttaaaatctgatctGCAACTTTAGCCTTATTTT-----------------TGCTAGTCTGTTTATATGGCCAAGATATTTAAGTTCACACTGATCTGTTTTGTACTTAACTAACAAGAAATAGCTAATTTGGCCACTGCATAGCAACTATTCTGTTGACCATATTTGCAGAACTTCTCAAACCTATCAAAAAGGCCATACTCCTT--------CCAGCAACTGGACAACTGTCAAATTGGATGG----------------------------------------------CAAATTCTGATTCTCAGCCTGCCAGTTCCAACAGTTAAAGTAATTTATAGTACTTTTTCTTCAAGTAGGGTCTAATGCATCTCCCTGTTTCTCCTGGAATAAATGCAGGAACTGACAGTCAGTTTGAAAAATGAACT-----CtaaaaaagcaaattagaaaatatGAAGCTGGACCCCAGAAGATATCCCTAACAGATTTAGATGAATTGGGGGCGGCCGATGCAGGAATGCCAAATCAAGGATTTAGGACAAAATGTTGACCACTAGATTTCCAGAGTCTCCAACCCCAGTATATGAGATCCTGATTTAAAATGTTGggtttacaattttaaatatttttcaaatatcactTAAATATTTAGCACATACCCATTAGGTGaact-aaagattttattttatgaaacctCAGATAAGCTA---CCATACAGTGATCCCTATAGTATTGAACACAATGTATTGGTATAACTTATTTGTTGAGTTTTGGAAACACGTTATCCACCAGACTAGACTTaactg-tgtttcattttcttgcccCTTTAgtcaatacttttttttcttgccaGGGTAAAACCCAAACCAGGATATCACCAGGCcagtagaaattaaacaataataagcctaaat---atgatgactttaaaattttcaagataTGTGTTTTTTATGAAGTCTTAGATTTTATAAATCATACTTTTATAAGTCATTCAAGCCATTAGTGGCAAGAGATTATTAAAGCAATGACTCACT-ATTTTTTGTTAACCACAGGACAAATTCTAAAGCTA-CAGAATGAATGCTCTTTGTGCACTAATTCAATTCAAATTGGA-AGTCACTTGTGaatcaaaaaaacataaa----atttacctttCACATGCATTAACAAGAATGGa

a score=17045
s chr3           101901497 944 + 160039680 TATCAAGACAAACATGTTTATCCCGTCATGTTGACCTGACTCAAC----AATCTACACC--CATTTTTGTGCACGTGCTCTCTCTAATCACTAAATAGAATGC-----TTGAGTGTTTGTTGTATTTA--TTTCAAAATGGATTGGAAGGGCCTGGTGGAAAAACCA-GATAGCATAGTTCACTCAGCTACAGAAAAATAGGCAC-AGTGCAGGCCAGACCCAGG---------------AGCAGATGCCTCTACCATAAAAGATGAAAGGGATGTAAATATGTCTAACCCAGGTGCGAGCCCAGCACCAGGTGCTCAGCGGAGCCTTCCAGCTCGCAGAGAGGGGCGAGGC----GAGGAGAATGAAGGTGGAC-------TTACTCTTGGCTGAGTATCAGAGACATGCTTGGGAGAGGGTTTTGTTCAGTATTCAAG--CTTGCTTGTTTACAGGCTGAGGATAGAGGGCCACTGAA---GTCTGGGTACGTGGAGG--GCAAATC---------TACCCTGGTCGCAAAACA-AGTGTGGGACAGAGATGGCAAGCTGACAGCAGTGAGACCCGAGATGTAAAAATCCCACTCCCTCTTATTAATGAATAGGAAAGAAAGACCATGAGGACAAATATTTTCATCCCCAAATGCTTAGTGAGCCAGGCTGGTCTGGATAGAACGG-------GGAAGAGAGCAGATTCAAGTTAGTTGTGGAGACCTGGCGTTCACAGGGTTGGAGTCTGGGAACAG------------GAATTAC---------TACTGAATGGAACACACCAATCAAACACAGAGAAAAGCTTGCTGATGAGTTTTAAAGAACATCATAAAACGTGCCTTCAGCATGTCT----TGAATGCATCAAACCTCGTGCTTTATGGAGATGT--CAAGTCAAATCTATCATTTCTCTGACATGGCAGAAATATCATCATCTGAAAAAAAGAGAATGACCAACGTACTTCCCTAACATGGACTCCCTGCTCAGGCGTAATTCTAAAAGCAAAGTTA
s HiC_scaffold_1 111970530 933 - 233722169 tacaaagacaaataCCTTCAGTGTTTCTGGCTGACCTATCTAAATTTATAACTAACATCTGCATTTTTATTCACATACTCATCACAATCACTAAATTGAGTTCAGAAGTTGAACATTTATTCTACTCTATTTTCCAAAAGGATGTGAAGGGTCTAGAATTAAAAGCACTGTACCATCATTCATTTG--CATAAAATAACAGACCTGAGAGAAAACCAGACTCAACTGGAGGCAGAACAACAGCAGGTGCCTCTAACACAGAAGATGAAAGGGACATAAATATGGCAAATACAGGTGTGAACACAGCA-CAGGTGCTCTACAGAGCTTTCCAGCTCcaaaagaggagaaaagtagaaaagcagaaatgaagagaacaaacaaaatCCTCTTGGCTGGGTATTAGTGAAGCATTTGGAAGGGGTTTTTGCTTAATCTTTATGTTCTTTTCTGCTTAAAGGCCAA------------ACTAAATGTGTCCTGACAAGGAGCAGCAACAGATCAAAAGAAGGTGCTCTTGCTGCAATAGAGAGCACAGAGCAGTGGCAGCAAACTG-CAG----------------GGAAAGGCCTAGCT-------------------------AAGGCCA-----------------------------CCAGTGATCCAGGCCAG-CTGTGCAAAGTGGAGCTTCAAGAAGAGAGCAGATTCAATGTGGCCAGGGAGACA-GATATTCAGAGG--TGATACCTGAGTCCAGCCATGCATAATAGAATTTCTTGTAGCCATACAGGATGGGTTAGATTAATAACATGTTGAGGGATGTTGAAAGATAAGATTTAAAGGCAGTCACAAAGTATATGTTCAGTATCTCCCCCGTGAATGTGTCAAAACTTAAGCTTTATGGAAATGTCACAAGTCAACTCAATCACATTTCTGACATGACATAAATATGATCATCTAAAA-----------ACTCAAGTGTTGCTTTAATATTTACTCTATGCTTA--TGTAATCCTAGAGATAAAATTA

a score=59778
s chr3           101903906 3455 + 160039680 TGGACTCCTGTCCGTCCTCTGAAACATACGTCCACACCCCACTTGACCTTCCTCAGCAGAACAGGCCCTCTCTTCTCCTTGTCACATCTTCCCCCATTTCCTTCTGCA-TGATGCCGAGTGAGCCTCGTGCTCCCCTGTCTCTCAAATGATGCCCTGAGCTTCCTGAGGGCACACTGGAAGCCTGTGTGCTAATCTCACAGTGCCTGCCAGCACGAATCGAACACTCACTGAATTGTGTGTGTAA---GGGTGAATGCTGTAGTCTTACAGGCATCTTCACAAAAAGAGGACTTCTGTTTCTGTGTCTggctgaccttgaaccggaagtgctcctcctgctcccctctgactgctgggattctgaaacgtgctactgtgccTCTTGGCACCTTTACTGCCAGCCTTGCATCTTAAGTTTACTAGAGTGCAGAAAC-TAGCTAACTGGCCACCTTGCCTTCAGTGCCACTGAGGGGCATTTG---------GAGTTTGAGGGG------TTGTCTTCTTTCTATGGTCAACCTGGCA--TTTAAACAACTTTAAGTTT-ATCTCATGTTC-------------ATTAATGCATAAGTATTTCTACTAAGCACAATACCCATCATCATACA-----AAGAGCAGTGCCACGGGTGGGCACACAGTGGGTCAATGAATCTGTGAGACAGGCAGTGACTCCAGCAGG-----TCAAGGAGGCATGATACCCCTCACCTG-CTGCTGAGTGTCCTCTGAAAGGTGGACTGGTACTGGGGCCCTGTATATTTCACAAGTACCACCTCAGCTTTCCAAAAAACGGGGGCCAATC-CATGGCCGTTC------------------------------------------------------------------------------------------------AGTCCA-----------------------------------------CCTGGACAACATGC---------------------------------------------------------------------------------------------ACAGGAAGACAATGGC-AGCTCTCTGGTTGTCA--TGGCAGGCC-ACCTAAACACGGGCACACAAGACTGG-CCTATGCCCACTGATTCAGCACCCTGCATCTTGAAGACACACTCTGGGAAAGTCAAGTTATAACAACCACTTCCACGCCCAGACTCCTGGCTCATGGATATTCCAAGACTGCGGAGCCAGAACAGGCAGCA-CTTTCCCAACACCCCAAGGAACGACCTTGAGGGCCCCGCAGGACC-------------------------------TTGAGTGGGTACTGATAGCAGTTCCACACAAACATCATCACCAACCTCTTTGCCCTTGTCTTCTCCATAAAAATTACAAATGGCTTTGTGCAGGAAAACCTCACTCCAGGAGCAGATCAGGTAATGAGAG--CTCCCGAGAGTGGGGCGTACTTGGACCGGGCATCTCCAGAGCAGTTTCATGGTGATTAACTAACTTGCTTCATTTCCATGTTGTTGTCACTCTGAATCACCACGTAATGGGTGAAGTGTGCAGGCGAGGACAATCCATAGCACAGGCGTAAGGAAACAAGACATTAAAACAAAATTAGCCCCTACAGCAATTAATTGCAGTGAATTTTTCAAATACTTTTAATACTCTGCCTTCTGACCCCGGAGTCTGGCTTGGGGAAAAATATATTAATCTCAAGATAATAGTCAGTCAACTTCAGCTCTTCAATATCCACAATGATATTAAAGATTCCAACCTTGTGCTTTTTTTGGTTGCAAACATTAATTAAGCATGATAATTGTGTGTCTCCATGATATTTGGTATTTTCTGTAGGAGTCAGAGCTCAGGGAATAATTTGAATACAGCAGACAGCAATTTGCTACATAAATCCACCCCAATGGCTATTAGCTCATTTGAGAATAGTCAAGACTGCTAGATTAGAGG---ATTTTTTAAAAATTAAATACCGTGTTAATCACA------TAACCTTTTATTCACCCTT-TCCAAACCCTCCATAAAACAGTTCTTCAAGA------TTAAGTACAATAAGATGTTGGTGGAAGCAATAAACTGTGGA-------TTTTAACACAATACCCTAGATTGTG----GAGTTCCGTGAACACTATCTTGATATCTCTATAC--------------ACAGGTAAAGAAAATTTCATACTTTATTTTAT--------------TTGGATTTATTTAATAGGCTGTGGGAATGTGTGCCCACCTCCAGGCCTTTGTCAAGGtcctcc----------------------atctccgtggggca-ggtatcaag------ctcaggttcccacacttagcagcaagtgcccttcctctcagccaccatcatgctggtccAAATAATTCAGACTAAATAAT--TTCAACAAGAG----CCAGGTCTTGGGCT-----GTG-CATATACCACAGGCTGCTTCAGTATG---------AAGACTGAAGGGGGAGCT---------GAGATCGAATCAGTGCTGAGGGGGGTGGAGGTGGGCTTGGAGCTGTACTTCAGCTGCTAGTGAAATA--AACCCGGCTTGGTGCACAGCCCGGT----------------------GAGTGGCTG--GCATGA-TCGGCCTGTGCTCCCCACCATGGCTGGACCTTTTTCACCA--GCCATTAATCTACA--CTGCTTCCAGTCCTCGGCTGGATGGTGGTTTGGAGACAAGAGGGAGGGG------CTGGAAGCCACCATATGTACCAACCACATCAAGCCACCC-------CAGCAGACCTCTAAGGTACCAGGCAGGAGCA--GCCTGAGAGCTCCCATGTGGCTCACGTACTCTGGACGAGGAGACAATGTACATAAGGCAGATGCAAATGCTGTCCCTGACCCTTACAATAAAGTAA--GACTT-----GGAGAAAA------AGAAATGATTCTGTGTTTCAGTTATGTCTTCCCGAATCTCCACCAGAGGAGAGGAGTGTATGACGTGACGCTGCCAGGCTCCACCTGCTGAGGGGCAAGGGACTTGTCCCTTTCCTCTTCTCTCCCCTTTCCCCGCTATGACTTTCTTCTCTTTCTCTTCTAACCCTGTCCCCtttttgtgacaggatctcatcttcagtccaggatggcttcaaactcataattctctattccttgaattctggggttacaggcatgttccatcatgcccagttTTTTTATTAAACGTCTCTGTGGTGTTGTCTGTAGTACTGGGAAGCAGGTTTCTTCATGTG-GGTTAAC----AATAAAGCAGGGCAGAAGCCTGGCCTCTCCCACTGGCCAGTACAGGCTTGTGTGTGCA----AGACAGCTACCCAGGCCCCCCACGTGTCCAGAACAAATCCCCTAAGTCATATCTCCTTGGAAAAGGCAAGTGTCAAACACCGTTCATAGACAG--TGCTTCCTTGCCTGTCTGCTCTCTGCCTCAGAAG---GATCACAGGAGTCAGGGGACAGGCTCCTCCTTTTACAAGC-AGGGCACACTGAG--CAAGTTCCCTGGCCA---CTCCAAGA--------ATGCATTACTCTTGTTTCTCTATTGTTCCAAG---------------AGGCACCCTCCAGCAGGTGAGTGGCAGCTGGAAGGTATTCCTTTTATTCGGTCTTCTGTCTGATGTGTGTGTCCCACAGTCTCCCCATAGTCACCTTGCTTGAATGCACTATCACCAAACTGCCCTCAC-----------TTCATTCCTCACTTCTTGCCACTTCAGT------GAAGTTAATACAC-AGCTCAGGAGACTGAGTGGCTGGTCACAGTTTCCAAACAAGGGCTTCTGG-----------------AGAGGCAGA---GCTCAGCTTAGCC-----CTCTCTTCAAGGACAACAGCAAAGTCCCTG
s HiC_scaffold_1 111973788 3634 - 233722169 TGACTTCCTCTTCATCCTCCGTGACACACTT--GAAGTCAGTCTGATTTACCTCAGCAGAGCTGACCCTCTGTCCTATCTGCCAGATC----CGTTTTTGCTTCTAAAATGATGCATGGTGAATCTTGTGTTCACATCTCTTCCCTACAATGCTGTGTATTTCTTAAGGGCATATTTGTATCCCAAGTGCTAATGCTGCAGTGTCTGCCAG-ACTAATTAAACACTTACTGAATTATTTATGTAACAGGAGTGAAAG-TATAGTCTTACAGGCATCTTCACACA----------CTGTCTCCATGTCA------------------------------------------------------------------------------------CTAATTCCAGCACCAAGTTGTGAGTCTATAGGGATGCAGAGCCATAACTA-TGGGCTATATTTTCCT-GGAGTCACCAAATGGCGTTCTCATGAAAGCAAGTATGGGGAGGGGCACTTTCCTTCTTCCTGTAGGCAATCTGGCACCTTGgaatattttttggttttatctTTAGTTCCCAAAACACTGTAATTagtctataaatatctcaaccAGGAGAAACATATGTGATTATACAGGAAGAAGAAATGTGCTGTGGGTGATT-CATAATTT-TCATTGAATCCATAAaccaggcaggggctgtggcAGGAGTGGCCAGAGTGGTACCTCACTCCTCACCTGGCTGCAGAGCCTCTGCCTAAAAATGAACTCGTTCAGGAGCCCAGAGTAGTTCATTAATACCAGTTCAGCCTTTCTTGAAAGAGGGATTGACCATATGGCTGTTCCAGGCTGTTGTGGGGTGGATCTGGAAtgtcccctcaaaacctcatgaCTCAGGAAGGTGACTGTGTCACAAACAGTACTGAACACATCGGAGGATTAATCCATGAAGAAGCAGACTTCCGAGTGCTGTCAGGAGATGAGGGTGCCGGGGATACATGCTGCTTCTCATCCTCTAGATTATGGTTGttgggtactgtgtctcagtcatgagaaaatgagaaattcagGTCATAGCCCACCCCATTATGATAAAAATGAAGGCAACGGGGAGCTTCCT--CTGCCACCTGGCAGGCCCACCCAAAT--GGGCAAACAAGCCTGGGCATGTGCCTCTTGATCAAGCTCCTTGAGAGTCAAAGTCATACTCTG----------------ACAACTGCCACGGCGCC--AATCCCCAGCTTGT-------------------------AATAAACAGCAACATTCCCAACACCCCTGCGCATGACTTCGAGCATTCTATACAACCACACAGCCGGTCTGCTCTGCTGTGAAAAATTCTGAACAGCT-CTGATACTAGTTTCAACTAATCTTC-----CAACCTTCCATCTCCTGCAtttctcataaaaattatttat--ctacAGCTATGAAAATCTCACTTCAGGAGAAAACCAGGTAATCAGGGGCCTCCTGTGATTAGGGACGGTTTGGGTAGAGTATTCCGGGAACCGTTTCATGGTGATTAACTAACTTGCTTCATTTCAATGTAGTTGTCACTCTGAATTACCTCTTAATGGGTGAAGTGTGCAGGCTGTAACAATCAGTAGTACTAGCGTAAGGAagcaagacattaaaaaaaaattagccccCAAAGCAATTAATTGCAGTgaatttttcaaatagttttaatACTCTGCCTTTTGACCCCAGGGTATGGCTTGGGGGAAAATATATTAATCTCAAGACAATAGTCAGTCAATTTTAGCTCTTCAATATCCACAATGATATTAAAGATTCCAACCTTA--CATTTTTTGGCTGCAAACATTAATTAAGCATGATAATTGTGTGTCTCCGTGATATTTGGTTCTTTCTATGTGAGTCAGAGCTCAGGGAATAATTTGAATATTGCAGACAGCAATTTGCTACATAAATTTGCCCCAATGGCTATTAGCTCATTTTA-AATAGTCAAGACTCCTAGATTAGAGGGAAATTTTTT--GCATTAAATATCATGTTAATCACATCTACTTAACCTTTTATTCACCCTTCTCCAAATGCTCCATAAAA-AGTTCTGCAAGGCCTGACCCATTTCTAATAAGATGC------AAGGAATgagttttaaatatgtatttttaacattATATCCTATATAATATCATTAGTTCTGTAGATTCCATCTTGATATTTATATTCAGGAGTTTTATGTTATAGACAATGAggacttgctttttatttttatgctaaaaaaacaaatattatttatataccacaCAGTTTcaacattt--ccattt-----tcttttttattttctttcttttttttttttttttttttttgtctttttgagatagggtctcaggaCACAATTTAGGctgtcaggc-tggcctcgaactcactttgt---agcc-----caggctgttttag--aactca----aaataatcctcctgcctcagcctcccaggtgctgggattacaagtgccagccaccacacccagcttcaataTTCCCATTTTCAAGATTGGAAGAACAATTGCAAAACTAGACATGCAATAAAAACTAA------TACAAAGAAGGCTGAAATTGCACTTT-GCTA-TAATGAAGTATTAACTCAACTCAGTATAGAGACCAATGTTCCTAAGGACGCTGGCTAAGGAGTGACTGATgcaccaccctgcctctgctgAGGGCCTGAGTTGATCCGTGGCCACCACTGTCATTACTCTATACCCTGATGCTGTTTCTCTAATGACTTGTGGTTTTGGTAGCCCTGGAAGGAAATCAATCTGGAAGCCACTGAA---GCCAGCCACTGCAAGCCACCAGGACTTGAAACAGGACTCCAACAACCATGGCAGAAGCAAGGTGTGAGAACTCAC-------------ACTTTGAACACAGGGATG----GCAGCATGCAGATACACATA--GCACTTGTACctccaaataaaataaaggactttGCGGGGGGCAAACAGAGCAGAGAAGGTCCT-------AGTCAGGTTTCCCTGAATCTCCTCT---GAAGAGACAGATGGGACGCAGCATCAACA--------CTG----GGGTCAATG-----------------------------------------------------------------------------------------------------------GGCTCTAGATGCA------------CTATGAACTGCTGAAGAGCAGGTCTGtt-----------ag---ttttatttaatgttccTGAGTTATTTTCTGTTCTATCAAGAAGTACATATGTTTAGCTGAGGTTGACACTTACTAAAACTGAACTGGATCATTATTTCT----ATGGTCCTTGAGAGGGTCTGTGGGGACGGGGGACTGCTAGCCAGGGTCCCCCTAAGCCTAACAGAAATATCCTAGGTGACGTCCCCTTAAAGAAGGCAAGCACGCGACACCACAT-TAGATTGGCTACCTCCCTTCCTGCTTGTGCCATTTCCCAGGAGTCAGGCCACAGGAATCAGTGGCCAGGCTTCTTTATTTATTAACTGGGGGACACTGAGGCtatgttccttttttaaattttcaaggcACAACGTAAGTAGTATTCTTGTTTTTCCCTTTGCCCTAGAATTCTGCCTGTTACAGGTACTCTCAAG-AGGTGACCGGCA-TAAGAAGGTATTTGCCTTACTTGGTTTTCAGCCCAATGTACGTGCACCACAATTTCTCTGGA-TCATGGTGCAAGGAAACATTCTTGCAG----GTCCTCACCAATGCATAATTCTACCTGTCACTTCCTGTCACTTCACTGCCGAGGAAGATGTGACCCAAGCACAGTAAGCCCTGTGCCCTG-----GTCTCTAGGAAAGTGCTTCTGAGGCGCCACAAAGGCAGCAGTGGCAGAGGGGCTTGGCGTGGACCCTGGCTCTTTTCAGTGACTATCACAAAAAACCTG

a score=10190
s chr3           101908745 449 + 160039680 CCATTGTCTCTTCTACCCATGAAACCTTCTG------GAGGTTCACCTTTCTACCTACAAGCTTGGAGCAAAGAATGAACAGTCTCGCCACAGCTGAGTGGTCTGTAAGAGTAAATGGATTTCTGTCCCAGTAGTGGACAGTGTTGCCACCTGTACTACATTATAAACAAAGCAGACAGGCCATGGCCAGCCTTGCAAAGCATCATGGACCTACTCAGTCTGAGGCAACTGGTTAAAAGT-TGAGACATTCCATAGATAGTC---------------------------------ATGACTCCAGACATCCTGTAGAGGGTTA-CACATTGACATTACCCAACTGTGCAGCAGAGCATCCCTCTCCCACCTT--AGGTCTAGATACACC--AGAGGA-ATGCTGGAGGTGCAGGCTCACTCTATGCA-GGGTAA-----TTTGCTCCTTGCATTATAACTCTGAAGGTGGAATATTGATGCTCAGGTAAGA-AAGGAACATA
s HiC_scaffold_1 111979173 485 - 233722169 ccattctttcttctgtttacaAAACCTTGCATGGTATAAAACTCTTCTTGCTACTCACA---------CATGGAATG----GGCTCATCACAGCTGAGAAACTTGTGGGA----ACTGAATTCTGTTCCCATAGTGACCTGTAATGTTACTTATACTTCTTCATCAATACAATAAACAGGCCACTGCTACTCTTGCAGAGCATGATGAACTCACTAATGTTGAAGCAGATGGTTTACCCTGTGAAGTACTCCAAAGATAATTCATTATAAATCATGTCCACAAGGCTCCCCCAGAAAGTCCCCAGAGATTCCATGGAGGGACAGTGCACTGATATCACCCAGCTATGCAGAAGAGCAGCCGTAACCTCACTTGCAGTTCTTGATACATCTTGGAGCATCTGCTGGAGACTATGGCTCACTATCTGTACAGGTAAAATGTATTATACCTTAAAATACACCTCTGCAAGTGGGTAAGTGAGGCTCTGATAGGATGGGGAACATA

a score=17992
s chr3           101915293 259 + 160039680 GGCCT--GCTTACCTCAGAGGCAATAGAGGTGAAACTGTTGCTGAAATGCACGTGCTTATGGATCTCACTGCCATTGGCGGTCAGCAGCCAGTCCCCGAAGGCCTGGCCTTTGCCCAAAGTCTGGTTGCTGTGGCTCTGGTTGGGCAGGAGATCGGCCATGTCCCAGTGGTATGCTGGTGTAGCTCCAATCAGTGCAATGAGGATGGCTTCTGTGGCCACATAAAGCTGGAAGTAAACACACAGAATCAAACGCTGCAGAC
s HiC_scaffold_1 111987219 261 - 233722169 GGCCTCAGGTTACCTCAGAGGCGATGGAGGTGAAGCTACTGCTGAAATGCACGTGCTTGTGGATCTCGCTGCCATTGGCTGTCAGGAGCCAGTCCCCGAAGGCTTTGTCTTTGCCTGCTGACTGATTGCTGTAGCTCTGGTTGGGCAGGAGCTCGGCCAAGTCCCAGTGGTACGATGGTGTGGCTCCAATCAGTGCGATGAGGATGGCCTCTGTGGCCACGTAGAGCTGCAAGAGCAAACACAAAACTGGACACTGCAGGC

a score=75856
s chr3           101916148 3364 + 160039680 tttgttTGGGCTACAGAAATGGACCACATCAGAAGCCAGGAAGAAAAAAAAAATGAAAAAGCACCCATGTT---ATGAG-AGGGCCATCAGCAGTGCACTCACGGAGCACTCTACTTCCTTAGACAGTTTTCCTTCCATAGCTGCAATGTGTCTGATGCTGTGGGCTTT-------GTGTGATATTGTCCAGCACTGGCGTAAGGCCCACATTGCTGGCTCTGGTTT-AAAAGATTGATATTCCAGTTATTTTCTTCTCAGCACAGTGTTTTCAGCTcaaaaaaaaaa-----aaaaccaaaaaaac--------------------------aaacaaacaaaca--------------aaaaaaaaCATGTTACTGGGAGTCTGGAGGCTCTTGGCTTTGGATTCATGATATAAAGGCATTGTTTTAAAATGT----------------------GGCATACAACTTGTAAGACTTAAAAAGCTTCAAAATCTCAGGCATA----TTCAGGTTGCAATTTGTAGCTATGTTT----AATCTTTGTTTGCTCTAACCATAACTGTCCACTAACGAAGAAAAAATACAGCAGCAATTGATAT----GCCATCTGCTGA------CTGCTCTCCGTCT-----TGTGGCTTCT-----------CGAGGCTGGGTTTGTGGG-TGTTGATCCCTAT-CAGAC-TTGACTGATATGGACATCTGTTTGTGTTAGCTCTCATCGTTGAATGATTATTTCAGATTTAACATTCACTAAGAAAGCACGTAATTAGTCTGCATGTTAAGAAGATCTTATTTTAAGGAAATAAGATCCCTGTTAACTT------TGAACTTGGTCTTAAAATAAACAAGCTAAGTGTCTAAAAGATACAAAGCATGTGATTTCTATCAT--TGTGTGGCCGTGAG---------------GGCTGACT-AGGCACATGGAAACAGGGAGTGTGGCAGAAGATTCCTCTTCTGACCACCGAAAACTCTAGCTGGGGGCTCTTTTTtttttttttttttttaagatttatttatttcctatatgtgagtacactttagctgtcttcagacacaccagaagagggcatcagatctcattacagatggttgtggctaccatgtggttgctgggatttgaacttaggacctccggaagagcagtcagtgctcttaacggctgagccatctctccagcccTGGGGGCTCTTTCCACACCGTTCTGCAGGGGTATGTTCAGCTAAGCAGATAAATAGAAGAGCCAACAGCATAGCCACTCATCAGTGACAGGTGATGGAATTA--GTTATGGAAAGAG-AAAGAAGTCATGACATTTTGTGACTAGTATCAGAAA-CGAATGCAAAACTTGGGTTGTGATTTCTTCCCTCTTGGTAAGGCTGATGGGGCACAAGG----------CTATTTTGAGTTGATGGACTGTGGACCTTCTGGGAGAAGGGCAAAGGTACCGTGGGTCCATAAGCTGTCAGATTTCTGATAAGGTG-AAAGGAAAATCTGTTCCTAGGCTTGCATATTTCCTGGACCTTATTTGCATGCTATTAAGGACATTTTAGAAGAGGAGGCAATCAGCTTATAAAAATAAAAACCTTAATAATCACAAGAACAAATAGATTACATATCTAGCAGTAGCTATAATTACGAAGCCACTTTCATCCACTTAGTAACTGCCC-CTCTGATTACAATCTGCTGAAATTTAATTGATGGGTATAAAGAAATGAAAAACATGGGCCAAGGGAA----TGCAGGAGATGACTCAAAGC-----------------ACAGCCTTTCATCAGGCAAAACAAACCAGCCACGTTCCCTCTCTAACCATCCCCCCTTCTACCTCTGTGTGTTCTGCTCCTTCCCCTGG------AGGCACCATCTCCTGTCA-GCATCGTTAGAATGCTCTCATTCTCTGAAA----------------GTCTGCTT--CTTTTACCTGCTT------CCTTTCTGAC-TCAGCTTCC--TCTCCAATGGCCCA-GAAGTTCTGTTCA---TGTACATTT----GTTATGTCTGATTCATCTTTGGGCTTCCAAAGTAAATAAGCCAGGGTCCCCACACTCAACAAGGGGATGAATAAATGACCAAGGAGG-ACACTAGTAATAATAGCACATGGTTTTATAATGTTAGCTATGTGCCATTCCAAGTCTAGGTTTCTGTTGAATGCATGTTAGCGCATAATGTTTTTACCTGGATTGTTCTAGGACAAGCAATATTCC-AGATGAAAGAGGAAATGCCCTAAGGGGTCCTCTCATCTGAGTTTTGCCTCATCCTGACGGTCACACAGTCCTTGGTATGTATACAATTTTGGGAAAGCAGTTC--AAAATGAATGGGTGG-----------------------------TGGAATC-CAGT----------TAATCAG------CCTTGGGAAGCAGTGTGCGCTCACTTCATCCCTAGCCATCAGTAAGAATAAATAACACACACTCTTCATCCTCTCT-CCCTTCTCTCCCCTCTCACAACGTCTCCTTGGCCCCTTTATGGACAAGCATGAGTGTGCATG-------ATGCGACATACACACACACATTCAAGGTCCTTAATACATATGTGTTCATCATTTTTATGCTAACAGAGAGGCTAACATGTG-GAACTCTTCTATGCAGTGCCAGC--------------------CCATGATCATGCTTGGTTTTCTTACTCATCAGGGAGACACAGTAGGCAGGTAGCAGCCATGTTGTGTAATAAATGTTACACAA--GGCACCATGAGATTAGGTCAGAGAGGTAAGGTTCAAA------GCCCATGAAATGTCAGTCTTCCTTTCAAGAGGCACATCCTGGGGTTACATGGTCATATGAAGTCAAAGATGACACAACC-------ATCCAT-GGGATGTACCACC--CACCCAGAACATGCAGGTGCTTTTTCTTGGTTCGCCATTTTGACCGTG------ACACAGTTTACATCCCCT---TCTGTCCCCCAAAGAACCAAAGTGGCCTCTCATCGTT------TACTACCACTCTGCATATACCATGTATGCATGCACCCAC--ATTTTTGTCTAATGAAATCACACCTATCAGCAGATGGACTTTAAAGCCACAATGAGAAACCACTGTCTAGTCTCCTTCTGTGTGGAACTAACAGCATCTTAGATAAATCATTATCTCCTTTGGCTCCAGCTCCAGGGA---AGAACAAGTGCCCCAGATGGCTGGACTCCCCTTCCAGCCCCATCCCCACCCGCCCCAGTGTAATTAAAATTATAAAAATGACC--------CAAGGGTATTGAAAATTT----GTTTCTGAAAGTGAAGGTTTCTAAAGTAATTTTGTAGTAACACCATTATGGGCTTTCATAATGTGTCTGGGGAA----ACCATCACA--ACCCTGCACTGTGAAGTCATGGTTAAGTCTGATGTTTACTTTGTGAGTTGG----AACAAGATACAGAGCAATTAA--AAACCATTCAAGGTTTCCTGTAACAGCAACAGCAA-------GATGA-GAGTGGGGTCACCTAACTCTATGGACAGATCTTTTTCAAGGGAACATAAGGAACAAAAATCAAAGTTGATTTCATTGCCGGCATTGCTATTAGTCCTTTATGCACTTAGGACTCGATTGT
s HiC_scaffold_1 111987529 3414 - 233722169 TTTGTATATGCTACTGTGATGCGACTCACAAGAAACCAAGCAGAAACGTGCA--GAGAAGCTTCCCATTCTCCAGTGAGCAGGACCACCAGCAGTCCATTTGTGGAACCCTGTATGTTTCTG--CAGTTTTCGTTCCACATCTGGGATAGATCTGAGACTAAAGACTGTCTTTATGGTTTGACTTTG---------GGGGCGAGGGCCACATTATTGGCTCTGATTTTAGAAGACTAACATTACAGTTATTTCATCGTCCACACTGCATCTTCAGCTCACATCAGCAACCTCCAGGGCCAGGAGTTCCTTGGCCTAGGGCTGTGACCTAGGTAAGACTGTGACACAGTGTAGtgtctcagaaaatagaaactgTATTAAATGTGTTAAATATCCTAAAAACACATTAAAGCAATTAAGcc-------taatatgtacttgagtagacATTCTGAAAGGGCATATATCTCACTAGATTTAAAGAAGTTCAAAATTCCAGgtataaatgtttatttcataacaattagctataatttttaaaacgtGGTTTAGTTTAAATATTGCTGTCTTCCACCAAAGAACAAATATGCTACCCATCCATTTAAGAGgtatttattaaatacatttgtcatCCATCTGTCACTGATGCTTCCAGGCTCTGCAGCAAACCTGGGTCTACAGACTGCCAAACCCCATGCAGCCATTGTATGCTAGGGTTTTCCACTTGTATTAGTTCTCATTGT-GAAAGATTACTTCAAGTTTAACATTTATTAAGAAAATGCATAGTCTG-CTCCAGAGTGAAATGATCTTATTTTAAGAAACTA---TCCTTATTCGCTTGACGCTCAAacgtcatttttaaa------------atgtcaaaaaattacaaagcatGTGACTCCT-CCATGGCGTGTGACAATAAGCCCACTGGATGGATGGGCCAACTGAGGTACATCAAGGCAGAGAAGGTCCTCAATGTTTCCTCTCCAGGTTGCAGAGAATTCTAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGCACCTTCCACACTATCCTGCACGGGCATATTCAGCTAAGTAGATAAGCTAAAAAGCCAGAGGCGGAGTAATTTATCATCACTAGATGATGGAATTActgtcaaggaaagagaaaaggagtcATGGCATTGCATGCGTCATAACAGAAAGCTAATGTAAAACCCAGGATGTGAT---TTTCCTCTTTCTGAGGCTGAGAGGATCCAAGGCAGTCCCAATCTATTTTAAGAAGATTGACTATAGGCCTCT---GACACACGCAAAGCTGCCATAGGCCAGTATGCACAGTGATTTATTGTAACATGCAAAAGAAAACATGTTCCCCAGTTTACATGCTTCCTGGCCCCTATTTGCACACAACTGAGAATGTTTTAGAATAGGAGGCAAtaagcttataaaaataaaagccttaATAATTACAAG----AATAGATTACACATTGAGCAGTAGCTATAATTACAAAGTCATTGTCATCTGTTTAGTGACTGCCCTCCTTGATTACAATCTTTCAGGATTTAATTGATGGGtataaagaaacacaaagcatGAGGCAAGAGAATTTTTTCCTAAGATGATTCAAAACACATGTTCTTCGGAATGACAGCCTTCAATCAGGCAAAGAAAACTAACCATGTAGTCTCTCTAAATGCGGTCTTTTCTACT----TGTGCGCCCATCACTCACATGATGTGGCAGGCACCTTCTCCTGCCACGAATACTTGAACTCTTCCCATCTGCCAAGATGCAGGCACAGAAATGGCCTTCTTGCCATCCACCTTCCTCTATAGCCCTCCAGACATCTTTTTCCTGTTTGTGCTCACCCACAAAGTGCTATACAGACTGTCTACTTCATATTTATGTCT-ATTCACCTTT-GCCTCCCAAAACAAATAC-CCAGGACCTACACATTGGATAAAAGAATGAATAATTGGCAAAGATGGAACACTAATAATAACAGCACATATGTCTACAGTGCAAGCCACGTGCCAAATCTAGCCTGAGGTCTCGTTAAGTGTATATAAACATACTGTAGTTTTATCTTAATTGCTCTACAATATGCAATGttttaagttaaaaaaggaaatgttctAAAGGGTCCTCTTACCTGAGTCATGTTTCACTATGAAGG-CAATCATTCTCAACAACCACTACAATTTACAGAaagcagtttaaaaaatgaagaactgGGGCTGATATATCCCTTTAATCATAATTCACGGAATCACAGTGCAGGAGACCTAATCAGAATTATCTGTACTCATCAGTATTAACCAGTTTCATTTCTAGCAATCTGCAAG----CACAATAAACATTTCCCATCTTTTCTGTCCTCCTCCTGCCCTGCACTGTGTCTCTCTAATCCACTTA-----ATGCacgagtgcacacacacacacacacaccacacacgcatgcacacacgaTCCGAAACAGA------------ATACACAGGGCCACAGGAAGATCAGAAACTGAAAACTGTTCTATACAATGTCAGCCTCAATCAAACCTTAAAAGTCTATGGTTATGATCAGTTTTGCTGCCCATGAaggagacaaaataggtagaaagcAATTATACTGTGAGATAAACACTATGCAATGGGCACTGTGAGATTAGAGCAGAGAGGCGAGGCTTAAGTTCTGCACACAGGATAGTTAGGTCCTCCATACTCGAGCCACATAC-------ACA-GAACACATGTAGTCAAAGTCAGCTTAGCCCTGAACTAGTCATGGGGATGCACCACCTACACACAGAATATGGGGGTG-GTTTTCTAGGTTGCCACCCTTGGCTAAGCGTCTCACATAGCTCACACATCCTGTACCTTTTcatcaacaaataaaaacattctctcattctttttttctactgttACCCTACCATTTTCATGCACATATCCACCCACATATTTCTGTCTAATGAAATCGCACCCAACAGCAGATGGAccttaaaaccacaatgagaaaCCACTATCCATTCTCCTT-TGAGTGGGACTAACAACATCTCAAATAAATCATTATCCTCTCTGGCTCTACCtccagggaaggagaaaaagtgcCACAGATGGCtggagcttttttatttttcctttccc-----tttcaatGTAATTATAATTAGAAAAGTGACTAAAATGCACTAGAGGATTgaaattttggaagtttcagaaagtgaagaatta-aaagtaattttatattaaCATCATTATAAGCTTTCATAACGTGTCCCATAAATTATATCATCACAATATCTTACACTGTGAAGTCATGGTTAAGTATGATGCTTATTCTACAAAATAGGATTAATGAGATATGGAGCAGTTAAGTGAATCATTCAAGGTTTTGTATAACAATGATAGCAAAAACCAGGATGAGGAGGAGAGCCACCTAAACTTGGAACCAGAGCCTTTTT---------TCAGGGTCAACAAACA----TGATTTTACT-------CTGCTGTTAGTTTTTTATGCATCTAGTACTTAGTTAT

a score=15472
s chr3           101922751 1496 + 160039680 AGGAAAGTTAACAGGTCCTGACCCAGAATACTGGCCTTCTCAGTGCCACACTCAA---------GATTTGATTCTAAGTTGGCAACCACCTGGCTAGGCAAAT---AAGATGCTAACACAAGAA--------GTGGAGCAGAGAAGTGGCCAAAAGGATTGCCAGGAGAGGGGATATA--TACTTGGAACTCCTGGTTAGATGGAATATTGTCAAAGAAACCATTATACATGAAGACCAGACATTGCAGTTGCAGTTCTATT-TCTCTATACTAA-------------------------TTCTTACTCTGCTAAGAGAAAG------------------GCTTCCAAGTATC-------ACCACTT------------GAACCGATGTTCTG-----------CCTGGTGCT------------------GAAGTCAACTGAA--------GATTTTAATGGGGAAAGAGAATCAGTAGATTAAGTTTTACCTTACTGCCTC----------TCTTCCTGCTGCAGCATCA----ACACAACGTTGAAGCAACTTGTGGGCTCTGGTTATAACCGCGGCCAGCCAGTACTTCCCTTGCAATAATACCTTAACTTACTTAGCTCAGCTGTCAGC---------CTCACAGTGTCAGTGTCA---CAGACCACTTCATCCCAGGATTGCAAGCCTCCGGGACAGGGAGCTAGCTTCAttttctg----------gccctggtggtagggatcaaaccca----------------gagccttg------------cacatct-------agggctttaccactgaCTGACCTGCTTCCTAGGGACAATCTGAGCTgct-----caggctggctttgaatttgcctagaagaagagccatccttctcctgcctcagtttccatagtgctaggactacaagaatgaaccTCTTAAAGAGCCCAAGGACTCCTAAAATCAAGAGTTTTAGGTTGAGGTGTGCAGCTGGTT---TCTGAGAATTCAATACAA------------------TGAACCACACTGTGTGGATGGTATCATTTCCCTAGA------CCAAAGCTGGCCTCGGAGCTTAATAACCCAGTAGAACTTTAACTAGAGAGAAATAAATTCCCGTGGATGGAAAGCCCCTTTAATAGGAAGCCTCCCTCAATCTCAGAGAGGGCTG-----------AAGGAGGCCATACTAGCTAGACCTGATCTTTTGTGGGCAGGTTGTCCATGCTTTCTCTGTCTCACTCTGTAAGG-------------GGTTAGGGTGCCGAATCCTTTT-----------GATCCCGGGTAATGGGTTT---CATCTTTCA-------ACTAGCTCT------------------GGTGGCG-----------------------------AAGTGTCAGTGC--CAGGCTC-TGGGTGACAGCCTGGGA-----GAGCTCAGTGGCT---ggccc--gccaccgcgcggcgcc-cgcc-cgcccccTCCCTCCCTGCGCTCTCGCGCCACACCTGGGGCCAGCCTGAGCTGAGAgcgcc-ccgggggccgcggggagccggggACTCACCTGCAGCAGCACAGCCAGCAGGAAGCACAAGTACATCTGATAGAGGCCCATCTCGCCCACCGCCTGGAACGCCTCCTCCACCTCCATGGCGGGCTCGCGCCCGAGGACCCGGCCGCCACCGCGACGGAGGACCTGGCTGCGCGGTGGCTGAAGATCGGGCGACGGAGCGACCGAGGACTGAGCCgggcggggacggagggccgagcggcagggacc
s HiC_scaffold_1 111997280 1660 - 233722169 AGGAAATCTAACAGGTCCTGCCCCAGAATATCGGCCTTGTCAACACTCCACTCCACTGAAGACAGACTTATTCCT---TTAGTAGACATCTCGTTAGGCAAGTCAAAACATACGACAGCAAGGAAAAGGTAGGCAGAGTGAGGTGGTGGGCTAAA------TCAGGAGGCTCCTTCCAAGTTCCTGGAATTCTTGGTTTGA--GAACA-------AGAAACCATTATAAATGAAGATCAGACATCATAACTGCAATTCTGTTGTCTTTGTATTAAATATTCTTATGGTTTAGCATAAACCTTTTTCCTCCAC--AGAGAAAGTGCATTTAACCTAAAACAGCCTAAAAGAACCTCAGAATACTGCTTTCTTTATGAGCTGAAAAGTTGCTCTGTTAAGAGAAAACCTGTCTCCTCTATCAGTCCATCATAAGAAAccaattaaacttttaaatattttagtggAAAAAGGGAAATC-TATGTTAACCTTTCCCTCCCCACCCACACACCACAGTCTTCCTGTTGAGCCAATGCCTTATGCAAGGGTTAGACAATGTAAGAAC-----------CCAAAACTACCCTGTACTTCCC----------------ACTAAC------CAACCATCAGCACATGTTAACTAACTTTTTAAGTGTCAGCTCAGCCTGCCCCACTGCC--ACTAAAATACACTGAGGAAGGGAATTGGGATTGTTCACTATTGCAACTCTGCCCTAAGGATATGCCACACAACCATCCAAGGAATATATTAAAGAATTGGGGGGGGGAGCTCATATATTATGTAAAGGACTTTG-----AAAAGAATgcctttaaaataatgaaagaagccACTGATGTCAAATGGGCTCT---TTCGATCAGCAGAGGAGTAA-----CTCCTGCCCA------------GCAAAGTTAATATGTAGTGATCTTT-----AGTGCATGGAACCCATAAGT-------------TTAAACTGTGCTGCTGGTAGGATCTGGGAATTTTATCCAAATAAGAGATTCCACAAGGTTAACCACACACTGGGAATGGCATTACTAACTTACAGAAGTCTCAAAGCTGGCCTGACGGCTAAATGACCTACCACAACTC---------AGAAATAAAA-CCTTTGTACTGAAAGAC--TAGAACAGAAAGC-TCCCTCAAACTCAGGAAAAGTTAGCAGGAGCTCTAAGGAGG--ATGCTCTCTAAACGTTACCTTTTGTGTGCAGGTTTTCAGGGCTGT----GTCCTACATTCCAAGGTGACAATGCCACAGGTTAGGGTAACAGCTTCCTTTCGCTTTTCTGCAATCCCAGGTAATGCAATTGTGCATCCCTTATTAAATAACGAGCTCCTAGGTCCGCACACCCCCCAGCAGCACCACCCACGCACAACTTTTTCATCACTCCAGGTGCCAGGACAGCAGGCCCATTAGAAGCTGCTGGAGACGCTGGCGCTACGGGGCTCGGGGCTCAGGCCTGTGCGTGGCACCGCGCTGCGCCCTGCCCTTCCCGGCGCCC----GCCCCACCTCGGGGCA--CAGAGCCGAGGCCTCCGCCAGGCAGCGCAGGG------GAACTCACCTGCAGCAGCACGGCCAGCAGGAAGCACAAGTACATCTGGTAGATGCCCATCTCGCCCACCGCCTGGAAGGCCTCCTCCACCTCCATGGCCGGCGCGAGC-----AAGCCGG-------------------------GGCGCAGAGGCTCGGGACCG-----CGGCGGGGTCGGGGGGCGAGCT---CGGGGAGGAGGGGCCG-GCGGCCTGCACC

a score=52647
s chr3           101927818 3382 + 160039680 TATATTTGTGATGAATTATATAGTCAAAATTGTTTTCGCCATCCTGCTCTGTG---------------CTTCTTTTAACTGCCTTGGTCATCTGTTGGATTATTGCATTTAtttttaaagacaaggtctcactatgcccccctggctggcctggaactcactttgtagaccaggatggacattaattcagagacatatctcc---------cactgtctcccaagtgctgggatt----taaTCTATTTTTTAAGATCTATATTCCTTTTGCTACTCTG-GGAGCTCTGGGTCACATCTTTATTAGTGTT--TTGGAAGTTACACCTACAATTTTTAACACCTATAAAACTGTGCTTTCCCACGATGTTTTTATCTATACATTCTACATAGAATCTATGTGTGTATCCTCTTTGCAAAGTGATTAAAAACCTATACAATGTTTTAGGAATACTGTATCTCAGG----------GGGCACAAAGATGTCACATTCTGGAAATGTTTCTAAATGattgtcacgttggcaagttttaaattacctaggagacaaccttctggatacgcctgtgaaggtgtttctagggaggcttaatagaggtgagtcctcatgtttagagattgtgggctgccatctcaggatgaataaagagcagagcagagcacagtcaagcaacagccttctctcagcttcctgaGTCTCTAACCCGGGACTCAAGGTTCATGGAAAGA-GTTTTGATTAGAAAGATTCAGAACATGTTTTATTGCTGAGAATAATTATTTTTAATATAGAAACAA---GAAGGCAAAAAACA---AGTATGTTTTCATG--GCAGTGATAATGGATTATTTAATAG--------------CCCAGGCTCTTTTAATAGC-----------------------------------------AAACTGGGAGGCCATGGGTCAGCTTACCTATGTTATGTGTGTGGGGAAAGAGGCAAATGATTATTCTTAACAGAAAAGATAACTGTGATTATGTTGCTCTGTGGGGTATTAATTCACTCGGTGCCTGGTCTAGCAGTACCACCCTAACACTCATGTCCTGTATGCAGCCATTTATTCAAAGGCTGT-GGGGCCATCTTTGCCTTCCTTCAGGTCCCTCAACTGTGTTCCAGTTGCACAAAACCTTAGCAAGGCTTTGTCCCATTTTGGACCAAATAAACATGTATTTAACttttttttttcccacaggtttctctgtgtagtagttcctgtctatcctggaactcactttgtagaccaggctggcctcaaacacagtttctcttgcctctgtctcccagatgctgggattcaaggtatgcacccatacacccagcAATGTGCATTTAACTTTAAACCCCCTTTTTTGATGTCATGAAGAGTTTAAGTGAAAAAA-------ATTACAATTAACATTATATATGACATATAGTTAAATTAATATATTG------TTAAGTAGAAGGTGAACTCTTACATCCTATACTC-AAAAGAAGAAGTATTTTCAGTTGACCAAGGCTTGTTCTGTATAATCAGTCC-CTGATATATATTGCATCATCTAATCTGGCAGCAGT--------------------------------------------------------------------------------------------------------------------------------------------GAGTG----------------------------GAAAATACACGTAAGATACACCAGTGGAAA--------AATGA---AAGCAAGACCTAGAGAGAGAACTTAAACCCAAAGAACAACAG-----ATGGAGAAACAAAGTCACATCTAAAGTAAAATCAGCCAAAA-TTGATAGCAATTAAAGTTTGCAAATATAATCagggtgaaaccaagattcacctccaaattcagtcctgaaagccagattaaaagagtggaggtgctgttaactgag-gcgggaacccaaagtgtggaggttt-----gtggtagagggtG----------TATGTCAG-AGTGGTGGAGCCAA----CGTTGGTCTTTTAAATGTCTGCTGTCCCTTTAAGATCCTGCCCTCCCCCCTTAACCCAGCCAGGCCCCTGCTGGGTTTCCATGCCCTAATTTACAGTTAGAGACAGAGCTTCTGAGCATGCACTCTAGAAAGAGCCAGGCTAATTAAAGCTCTCCTGAGGTTCAAGGTATTGC-----GTCTGTGGCTCTCAGCAATGGCTTCCATT-TGAGCACATATTTCCCTCATCTGACCTCCCAGCCCCCACCTCATTTTGTTTTTTTCTTAAGttttttttttaatcataattttataatatCTGTATC-TTTATTTATAAATCAGGAACAGTACACAT-TGGGTTTTTTTAATAGTTAAAAAATTAGAATAATGGTTGGAATACAGTGTTTATCAAATGCCCTTTGAAAGCATACTTATAAAAGGAAGCAAAAG----------------ATCAACTTTG-AAGCCCATGTCA--GCCATC--ACTGTCTTCATCAGTGATGATCCTGTGTCCCTGAGCTCTG---CCCT------GCCTTTTGTTTCACTGGTAATTTGGTGTCCCACATGGCTAATGAAATTTG-GTGTGTGAGATA-----TCAGATTAGTGTACAGTAAGTGTTCTAC-ACCAGCTACATATACCCAGGGCTACAACTGTCTATCTGTCTGTCTTTCTTTCATCATCTGAAGAATATTTTCCTCTGCA-AATCCTTCATTCACACTGAGAGGACACTGTATTGTGTGTGGGGGGGGGGCACAGCAAATTACTTTGATAAAGACAGCTGTTGTACA--CATCTGTGTCAACAGTAAATGGACAAAAACCATACAGCATATATGGTCGGGATGCAGAGGTCACAAGGGAGTCAATAGTATCTCCA------------GGATGGGTGCCTAGGAAGGAAGACAAG---AACACAAAGGACGAAGAAAACAGCGTTTCCTGTGATATGGATGGATGCCTCTGTCTTCTAGGCT---CTTGAAACAACTTCCCTTCAAAAACCATTGTTAGGTTGGTGAAAAACA---TTAAACAGATCCCCTAATTT-ATGTGGAGAAATTGGCTATTTCCATACCTCTAGCCTTAGCAGTAAA--------GTGTAAACAGAGCTAGG--CGAGATTCAGGAGGTTAAAGGAGA-----GAAATAGGAACGAAATTAGCCATTAATTATGCTAGAATTTAGATAGT-AGAGTGTTTTGCTTGCTGAGAGTCTAATTTTACATGTTGTCCAAGAGGCACGAAGCTTAGATAATAGGACATTCATTTAATTCAACAGATTCATCCCTGAGTGCCTGTCTTTAATGAGAACGTCAGTGATGCTGCTGTTCCTGTTATTGCTGCGGCTGTTTCT---------TGCATCAAAGAGTTCTATAA-TAGGGGGAAGAGGCTGAAATGATGAATTTGGTATGTGC-ATGGGCTCAATCAATTGAGGTTATGATTCAATTGAATGGATCAAAATGTACCCTGTATAGAAACGAAGACCCCTCAGTTTCCCAGTGTTTATGTACGGAGA----CTGAAATGGCTCCAAACCAGTGCAGTTGGTAGAGTATTGCACAGGGGTAAAAATAACCtgtgggacattgggctatgaacagacaggctggtctccagtctagctgaggtctgaaccc--cgaaactggtgataattcaccttcatgacatggtaggc
s HiC_scaffold_1 112007858 3303 - 233722169 tatatttcttgtgattaatttaac--aaattatttctcttatctccttttgtttttgctgtttgccATCTTATTTTAACTTTCT-AGTCATCTGTTTGgttattaaaactatttttaaa---------ttacttt-------tttttgtactaaagATCAAATTTATAACc--------tcttgcttgcaaggcaagtgttcgtgctgctaagctatatccccagtcctaaaattactttaaactacttttt--------ttttctttttgctagttTGTGGACCTACagattgtattattattattattattttattgttcctcttgta-ttttaaacattcacatcTGTATGCTTGTGTACAATGCTTATAGTTTTG----------------TCTCTGTTTATC----TTGCAAAGTGAATAAAAATCTATATAAGATTCCAAGAATACTGTGTCTAAGATGACTTAGAAGGACATAAAGATAT---ATTCCGAAAACCTTGTTTGGTGACT----------CAAGTTGTAA----------------------------------------------------------------------------------------------CCATCTC--------TAAAGTACA------AGTGTGGTGTGG-------------------------------------------AAGTTTCATGTGAAGTTAttttgattagaaaaa--aaaaaggaattctattgtttaaaaatgttatccttaacttgaaaataataagaaagcaagaaagatatGATATATTTTTACAATGTAATACTAAGGCATTATCTAACAGGCCTACTCTAGAATCCCAGAGTCATTTACCTGCCTTGGACTTTGCTAtttagtagagaaaaaaaaaaagcatagatattgtgaagttaCAGGTCagtttg--tagggtttttatg---GTAGAGATATGAGTGATGCTATTCATTGGGAAAATAATCTATGACTTCTTTTCCTTATGGAATATAAACTCACTTTATATCTAATCCAACAATcctatttaaaca-tattttcctGTA-AAACCCATTTCCTCAAATGCTTTCAGAACCAGTTTCATCTACC---AGTTTCCTCA--------CTAATT------AAC------------------------GAACTgaataaa---atatctgacat-----------------------------------------------gagttcattctgtt-------------------------------------------------------ttgaagtcatgctt---------------------tttaacttttaatttc-tttcttgacaTTATGATGTACTCCAGTAAAAAAGCCCAATGATTAAAGTTAATATT-TATGTGACATagagttaaaataataaattgaaagtgTTGGGTAGAAGTTGGGCTTTTTCCTCTTGTTCCCTGAAAGTGTTTGTATTGTAAGAGGGCCAAA-CTTCTTTTTTATACTTAGTTCATTCAGTTATATTGGAACGTGTGCACAGGAAGCAGCATTCTTTTGAGAATTGAAACTTTACTCTAGGGAGTGTCTGACCTGAGGTCCCAAGGGTTGATTGTGACGGCCCACATAGTGCTAAGGAGCTGAACACTTTCCTTCAGGTGATGGGGAACCTGAGGTACTGTTCTAAGTTGGAGTGATGTGACTTAAATAATGATTTGGAAGAAGAAAATGCATGTAA----TACTGGTTGCAAGAGTGTTTAATGGCCCAGACAAGACCCAGTGACAG--CTTACCCCAGAAGAATGACAACAGGAATGGAGGAGTACAGCTgaactttaaataaaatctgcAAACACTTTATAGTAATTGCATGTTACAGATGCAAATAG----AATTCAGGAATAACTCTCATGTTTAGTCTTGACAGCCAA--TGTAGGGATGTAAGGTCTATTAACTGAGAGAGGGAGCACAGAGGGTGTTGGCTTAGGTTGTAGTAGAAGATTGATTGAGTCCTATGACAGGAATGGTGGGACCGATAGGCATTGCTCTTTTAAATGCTCGTCGCCCCTTTAAGATCCTGCCCTTCCCCCTTAACCTACCCAGGCCCCTGCTGGATTTCCACGTCCTAATTTACTGTCCGTGCCAGAGTTCCTGAGCATGCGCTAAACAAAGAGCCAGACTAATTAAAGGTCTCCTGAGGTCCAAGGTACTGCACTGTGTTTGTGGCTTTTAGAAAGGAGTTCTATTGTGAGAGCCTATTTTGttcatctgaatt-------tttttcttatttttcctctttttaagg--cTTTTTTAAACCATAATTTTGTAATACCTGCATCTTTTATTTATAACTCAGGAGCAATATActtatatttgtttttagttgtaaaaaagataaaatagtgtTTAGAATATAG----AATCAA----CCTTTG-------GTccataacaggaaaaaaaaataatttggtacATTACATAAAGTTTGCAAGTAAATATAATGgctatcttcttttttttacaattacaAAACCTATAGGTCTAATCACTGAACCCCTTTTGTAGTCTTTTGTTTCACTGGGAACTTGGCATGTGAAATAG----TAGAATCCATGTATGTTAAGTATTCTTTCAAATCCTTCAATA-TCGGTGTTCTGTGGCCACCTAAATATACCTAGAGAcactg----------------catttttttaaaatctgaagaaaTTTTTCCCCTGTGTAAACCTTCATTCATGCTGAGATAATGTTTTAGTGTTAAT------ATGTCACAGCAACATACCttaataaaaataaccaaagtACAATTACCTTTGTCAATATTAAATTGATCCAAAC---ACAACAAAT-TGGTGGGACTGAACAGATCACAAGCCAACCAAGAATATTTCCAATTAAATCTGGGAGAAAGGAGCAAAAAGACGaatgaaagagaagcaaaaggaaagagggaagtaGTG------GTGAGAAGGTTG--TTTCTCTGGCTTCTGGCCTTGCCAAGCAACAACTTTTCATCCAGAAATACTGCTAAGTGGGTGAAGAACATATTAAAATAGATACA--AATTTAATCTGAAGAAATTCTCCATTTCCAGGCCTCAAATCCtagcaataaaacaaaagcatataAATAGAGCCAAGTCCAAAATTTAGGAGTCTGAAGAAGAGAGATGAAATATGAGGAATATTAGC-----ATTGTGTTTGAATTTAGATAGTAAAAGTGTTTCGCTTGCTAAAAGTCCAATTTTACATGTTGTCCAGGAGGCACTAATCTTAGCGAATAGAGCATTCATTTAATTCAGCATATTCATTCCTGAGTGCCCATCTGTAATGGAAATGTCAGTGGTGTTATTGTTTCTGTTATTGCTGCGGCTGCTGCTAGTATTTTGTACATAGAAAAGTTCTGTGACTaggaaaaacaaattgaaatgaTGAATTTACCATGCTCAAAGGGCTCA---TGTTGAGACTATGATTCAGTAGGATAGGTGAAAATTTGCCTGAAACAGGGACTAATGCTCAT-AATTCCCCAGGATTAAGGCATAGATGCTTCCTGGGGCTGC-CTGAACCACGTTAGTAGTTAGAATGTTGTACAAGGGTGATGAAACCCT--------------------CAGATTGAC-AGTCTCAGCCCTAGCTGTGTTCTTAAATTAGCAAAACAGTTTATG--TCACTTTCAGAAAATAGGAAGC

a score=14890
s chr3           101932514 323 + 160039680 TCTCTCCCTACTGTGAAAGT--TGTGCTACAAAGTTA-TATTAATGCACAAATTCACAGAGAGAATGTACATGATTTTCAGAACCAAATTAATCCTTAATTTACTGTCATACAGCTACTTGAGCCAAAAGATCATATTGCATTTTAAACAATATAAACTCATGGTCTTTCTCAGTCTTCATTTACATAAGAAGGGTGACTTACTCTCAGCCAAATGGAGCAAATCAAATAAATCCTACTGTAATTTCTCTCTTCCAACCAAAGACTTTGAATATTCTCAACCTCATTTTCCAGTCTTACAGATAATCTGTCATGGTCAAGATTTGT
s HiC_scaffold_1 112012034 303 - 233722169 TCTCTCCCTATCGTGAATGTCATCTAGTGGGAAGTTAACGTTAATGCACAAATCCACAAAGAGAATTTGCGTGATTTTCAGAACCAAAGTAATCCCTAATTTACTGGCACACAGCAATTTGAGCCAGAAGATCATATTGCATTTTACAtactataaattcat----tttatcagTCTTCATCTGCATAAGAA-----------TCTCAG-CAAACAGAGCAAATC----TATTCCTCCTGAAACTTATCTGTTCCAGCTCAAGACTTTGAATACTCT--GTGTTGTTTTCC-TTGCTATAGATAATCTGCCCAGGCCAAGATTCAT

a score=45656
s chr3           101936079 2038 + 160039680 ATAGGCTGCTGTCTGTGGGCTACTTTCTCTTAG-TACAAAT---------TAGCTTGGTAGC---CTTGTCCTCTGGTTTCTCTGTCAGGAGAAACAATGT-TTTGTGTCTCCAGTTCCACAATGATTTTAGGGTTCAGACAAAGGCAA---AAGTAAGGACTTTGCCATGTCTCCTAAGCTAGAAGCCCTAGCTGGGCACACACACAATGTGCCCTAGCTAGACACACTGTTCAACAATGCAACCACAGACATAAGCACATGCAGA----GTGCTTGTCTATTGTGTTTGGAGCCGGAGAATGGAATTGTGTTTGTCAGCCCGTGGAAGTGAAAGGTTAGTCCTTATGTAACGGCTATTCTGCCTCTGACTAGAAA--------------GATGCTACACCTTAGGATATGCTTAT----------TATAAATTCAGGATATGTCTAGTTACAATTCCCACCTCTTTAAATGTTCTGCAATCCACTAAATGCTAATCAGACCCTTTGGCTTACTGTGTGTAGCACTTTTTTTGCAAGCAAAGTAGTCATTGTTTCCACTGGAGGCACTTGTAACCTTTCAGATGGTGATGAA---TGGTGAACTTGGAACTGGGATGTTAATGATACATTCTTAGCCT-CTCTGTTCAGTGTCC-TGCTCTTAACGATGTGGTCTTTGCCACTGTCTGTGTCCTGGTGACCATCTTTCTCTTTCTCTCTGCCACCCTTCCATGGTGGACACATTGGCTGTTGACGATGGAATGACAGCTAAGTCAGGAGGGAGGAGAATAAGG-AAGGTGAT--TTTTAGCAACAAAATGACTGTGGCATAAAACAAATGTGTAGCAGTGATAATTAGAGATGTTGAAGTCAGTCCTTCATTATTATATTTTCTTTTTCTCTTGGCTCTTTTCAGCTGTATTTCTGAGGCAAAAAAAAATGCTGTCTGTTGGAAGGAGATGGTTGTCTCTTAAAACAACATA-AATGGAAATATATTG-----GCTCTGTGTTAATTTTGTTTTTAATTTGTTAGATATTAAGATGCAAGCGGATAACTAAACATCACTTAAGCAGAGAGGTTTTTCACGTAATGAAGTGGTTTGCACAGGGGGAGGACGGTCTGAGAGAGACAGTCTGTTTGTTGTCAAGTGTAGAAGGGCAAGATGAATTCATCCCCAGAGCTCTTTC-CTGGCCCTGCCAACAGGTGCCCAGCTGGCACTGGATAGCAGCATAACAGCTTGACGCATTCAACTGAGACCCATGTTTCCATTTTCCTTCAACCAGGGAGTAGCTAAAAACATGACCTCTAATCCCCTTACTGCGTGGGGGACATATAGAGGTAAATGAGCTTCTGGCTAAAGGCTCTAAGTAGGAACATCTCCAGGAGTTTTCATTTTTAAAGTTTAGCTGCAGAATGGGTTGGGagtccctcgtctgaaatcattgggaccagaagtgtttcagaatttctgattgttcttctcaggttcaggaatatatgcatacacGATGAGATGT-TTTAGGAGGGGACCCGAAACTGAGCACGAAGTCTATTTGTATTTCCTGTATACCT--CACGCACAGCCTGGGGGTTATTGT--------CTTTTCA-------GCATCCTGCCT---------CATAAGGTCAAGTGTAGGCTTATCTACTGGTGATTTTATGCCCATGCTGAAAACGTTCTGGCTTTTGCAGCA--------------------ATTGGAGATGTTCAAGTTGCAGCAATACCTTGTGAA---------------------------------------------------------------------------------------------CTAAAGTAATTTGTGGA--------------TCTTG-AGCCCTTGACTGTGTGAACAAATTCAGAAAAGCTGATAGTCT----GGGGGATTTCAAAATTGGAAATTTAATTTCAAGATCAAGGTTAGACTTTATGTATTTTTAAATGAGACCCGTGTTCCAGGATCCAGTCCATACACAACAGAGAGAAGGATTGTCCCTTCTCTGTGAACTCAAATTAATTTAATTTGACCTAAACCCAACATTGCTGTC----------ATAGGCTCACAAGTAATTCAAATTAGCTTTTGAATGTGAATATTTTCTTTTTAATTGATAGTTTTGTTTTGTTTT---GTTTATTTTAAGCATCTCTTATAGCCCATTAAAGTTCCCAGAGGA--TCATGTAAAACTAGAAAga
s HiC_scaffold_1 112012653 2164 - 233722169 ataGCTTTCTAACTGTAAAACACTTTTTGTTATCTAAAAATATGTAACAATGTCTTTGTAACACATTTGTACTCATAATTCATTG------GTATTAATGTATTTGTGTT---AGGTTCACAATGGTTTTAGG----AGAGGGTTGTAATCTGAATGAggctttccttctgtcttccagTCAAGAAGCTCTATTTGGGTGTATGTAT----TGTACTAGTT----------TTTAGCACCCAGACTACAGTCACAAACATATGCAGACCAAGCTCTTGCCTGTTGTATTTGAAACCTGAGTTGGGGCTTGT--TTCCTAGC---TGTCCTTGAAGGGTTATTCTTTACTCAATGGCAGGTCTGCTTTTGACCTGAAACAATGAACTGCAAAAACACTGCACCTTCTTACCTGTTCCTAAGTGGAGTATAAAAGTCTAGCATATGGCTGATTGCACTGTACCCTTCCTTAAGTGCTCCGCAAGCCACTAACGGCTGTTTTGTCCCTTTGCTTTACTTTGTGGG-----CTATTTGCTGTCAAAGCAGTAAATGATTCCTTTGgagatactttttaaatttcagatgatGGTGGAAGATGATGATCTTTCACCTGGGTTGTTAATGCTCTATTTTCAGCCTGATCTGTGAAGTGACTGCGTTCCTAATGATGTGACATTTGCCACTTTGAGTGCACTGGTAAACAGCTCTCCTTTTC---CTGTCA---------GGGAGA------GTCCATTGAGGATGAAATGGAGG---ACTGAGGTAGatgaaaaacaaagtaagatGAGAGTTTCAAGAATGAAATATCT-TGGgataaaatgaatgaatagaaCTAGTAAT----AATACttgaatcattttgt----------ttttatttttatcatttctccaTTTAGCT----TTGCGAGGCAAAATA---TGTGTCTTGTTACAAGGAATTGAGTATCTCTGATAACAACAGGTAATGGAAAGATATTGCCTTATCTTGATGTTAATTTGGCTTTTAATTTGTTAGATATTAAAATGCAAACTGATAACTGAATGTCACCTAAGCAGAGAGGTGTT-CTCTTAAGGAAGTAGTTTGCACAGGGAGAAGATGTTCTGACAGAGATCGTCTGTTTGACATTGGATATGGAAGGGCAGGATGGAGTTGGTCCCTGGGCTCCTCCGCTGGCCCTCCCAACAGGTGACCAGCTGGCACCAAATGTGAGCATGACAGCTTGAGGCACTCATCTGAGACCCACGTTTCTATTTTCCTCCATCCAGGGAGTGGTTAAAAACA--ATCTCTAATTCCCATACTGC-CGTGGGGCAGCACCAAActagtaagtttttattttaaaattctaagtagaAAGACAGTCAGTAGTTTGGAATTTTGAAATGTAAGCTTAGTACAGATTGAATATCCCTTATTTGAAATTTTTGGACCCAGAAGTGTttca-aatttc--attgttttt---ggatTCTAGAATATTTGTA-ACATAATGGGATATCTTCAAGATGAGACCCAAGACTAAATACGAAATTCATTGATGTTTTATATACACCTTATATACACATTCTGAAGGTgattttatgcaatattttttatgtacTTATATTTTGCTTGTGAAGTCATATAAGATCAGTTGTGGAATTTTCCACATATGGTGTCATGTTGGCAGCTACAAAATTATGGATTTTGGATCATTTTGGatcttggaattttgattatgaaTGCTTACCCTGTAGTAACATTttaggaacacacacacacacacacatatatatgaattgaactcaggaccttgtgcttgtcaggcaggtgctatgtaggctgctgagctatatccctggccctgcagtCATTTATGGACTAAAGAAATATGGCCTTATAACTTCTTACCATGGGAACAAACTCA-AAAAGCTAATAATATAGGCAggacatttaaaatttgaaaatttaactttaaattcaACGTAATAGTATATATATCTTTAGTGGAAATC--TCTCTCAGGTGAGGATTCATAT---CTAGGTAAGAAGATTCAGGCTTCTCGGTTAACCCTAAGTTGCTTGGT---AATTAATGAAGATAttaatatctaaaagaaaaagattctcacaaatattttaagtgaattcCTAAACTCTCATGTTTTCCTCTTAGTTAACATTTCTCTTTTGATTGTGAGGCTATTTTAAAAAGTGCCT--------TTGAGGCTCCCAGGGCAAGTAATTTAAGAGAGGAAAAA

a score=12239
s chr3           101952893 708 + 160039680 CTTTCCTG-GGATGTTTCAGTGCTTGGATCCCAG--TTTCCATCCCTTCAGCTTGGTCTTTGGCTTCACCGAGAGCATCCCCAATGCC-----------CAGCTTCC-------ATAAGAGCTCTCTGTGAGGCACAGCT--CGGAGAGAGGCTGCTCAAGCCACGGGTCACTCCA--AGTCGGTGGCC--CAGGCACGTTGTTCATTGCATTTCCATTATAGGAATTAGTGTAAACCATGTATGCCCCAGGTACAAGGTCTAGATAGAGGTGGGT-GCTGCTCTTAGGGAGCCTGGAGATGGACAAGCCCAGTAAATGATCCCAGTGCAGGCCAGGGGCAGCTTGGTTAAAATGTGTCCATTGCCTGGAACCACTCTTTAAAGGTAACCCTCAGCTCTTGGACCTGTGACTTTACTCTACATTTTAAAAAAATGATGAATATCTTTACGGCTCTTCCAAAGCAGAGTCCTCTGGATGGACTCCAAGATCGATACCTTTGATACCGACTTCTACAGTGG-TGAACAGCAGTGTACAGACTTTATAGAATACAATCTACGGCCTTAATTTATGCTAGCAGAAGTAAGGGGGGAAGTTAAGCCTGTTTGTTGGAAAAACTCCAGGTCTTTGTAGGAGGCTGGTGAT--------------------------------CTCCACACGGACATGTTCATCTTTATAGCACAGGC----------------AGGTCATACCAAAGGCCTTGTC---CCAGTTCCTGGCTCACGTGAAGAAGTCAATAAGTgg
s HiC_scaffold_1 112047874 750 - 233722169 cttttttgtgaatttttaatcACTTTGACTTCAGAGTTTTC----------CTTGATCTTCTGCTTTACTGATA--ATTTCCACTGTctctcagttttccagttttctaTTTGGGTAATATCTGTCGGAATGACCCATCTTTCTAATGCAGGCCACATAAGCCACAATCCTGTGCATAAATTGATGGCCTTCAGGCAAGTTGTCCATTGCTTGTCAATTGTGGCAGTTAGGAAAGAGTGTGTCTGCCTCAGGTACAGGGCT--GATGGAGCTGGGGAGTTTTTCTTAGGCAGGATGTGGGTG------CACAGTAAG-GAACCCAGTTTAGGGCAGGTGCAGCTCAGTTAATATGAGTTCATTGGCTGGAGCTGCATCT--ACAGTAAC---------TTGTGTTTCTGATCCTATGCTACACTGTAAG----TGTGCAGTGTCTTTATGGTCCTTC-AGAATGGAATTCTCTGGCTGAATTCCAAGATAGATACCTTTGATATTAACTTCAACCAAGGCTTGGCAATATCAGGGAAACAATGAAG-GTACAATCTATTATCTTAATTTCCACTAATATAACTAAATGAAAATAGTAACCTGGTATGTACAAAGGATCCCAGGCCTTTATAATTAGGTAGTGCTGGGTCATTTGCTATTTGTGCCATGTGACCAAATTTCACATCAATTTCCTTATCTTTAAAGCATAGATAACACAGTGAGCATTAAATCCATGCCAAAATGATTATTCTACTACTACCTGGCTTGTTTTACATACTTAATAAGTGG

a score=30170
s chr3           101959395 641 + 160039680 CTAGAAAACAGTCCTTAAA------GCATGGTTTTAATTAGTTGAGTAAGGAGACTAATTAATATGCAAATGAGGAGCTTACCAATATTAATCATCTGTTTTACTAGGCTGCTTTTTACTAAAGAGTTTCTAACGAGTTTGCAAATTAAGTTTCTTTGACATTAAAAATCAGCTAAATGCTTGTCTGAGAATAATCTCTTCTAACTCAAGGGTGGGAAGGGGGAA-----TTTTTTTCTTTTTTTCTTTTGGATCAAAAACAGCAGTGTTGAAAAACCAATTCCCATGTTGGCAAGCATGGTGCGAGAGCTCCGCATCAACCCTTTCCAGGTTCTAATTGAAACCATTTCGACAAGAGAGACACCAGAAAGCATTTGGAAAGGGGACAACTGTGAGCTGAAGGGATTTAAAGACACACGAACTGGAGAGTTGCATCGCAAAATTCATATGGAAAGTCGGCGGCTACCA-TGTCACAACCCCAAAGAGGTTACAGGCAGG--------CTGTGAATTCCCCTTTATGGCCCTTAACAAGCCCCGAAGACTCTGCTTTCTCAAATGTATTGGAGAT--GGTTGGACCTTGGTCTGCCAGGAGTAACTTCAAGAGTAGG-ATGGATCATCAGGCTGCCAGGAGCCTC-CTGACCTTCAGGATTCATTT
s HiC_scaffold_1 112055629 650 - 233722169 CTAGAAGAAACTTCTCAAATAGATAGTGCAGTTTTAATTAGTTGAGTTTGGAGACTAATTAATATGCAAATGAGGATCTTACCAATATTAATCATCTGTTTTACGAGGCTGCTTTT-ACTAAAGGGTTTCTAACGAGTTTGCAAATTAAGTTTCTTTGACATTAAAAATCAGCTAAATGGCTGTCTGAGAATAATCTCTTCTAACTCAAGggcaggaaagggaaaaaaaattttttt-------------ggatgaaaaacagaaatgttgAAAA-CCAATTCCCATGCTGGCAAGCACTGTGCATGAATTCTGTATCAACGCTTTTCCAGCTCTAATTCAAACCGTTTCAGCAAGACAGACACCAGAAATCAGTTGGAACAGGAACAAATATGAGTCATGGTGATTTAAAGATACATGATCTAGAAAGTTCCATCATATAACTTGCATGTTGTGTTGGTGCCTGCCATTGTCAGAATCCCAAAAGGCTTACATATacgtatatatttttaaaatttctttttatgacaTTTAACATATCTCCACAGTTCTCTTTTCTTGGAAATATTGAAAATTGAGTTGGATCCTAATTTATCAGGGATTTTATGAAGTATGGGAATGGATTACAAACTTTCCTGTGGTCACTTTAAGTTTCAAGATGCTTTt

a score=133669
s chr3           101960961 7104 + 160039680 [encoded data, 7640 characters]
s HiC_scaffold_1 112057316 6405 - 233722169 [encoded data, 7640 characters]

a score=18444
s chr3           101974814 914 + 160039680 GAGTTGTGTATTTTCAAACTGGTAAAAGTGATAAGCTAAATT-GTATTCACTC-GCCATTG-------GAGAGGGTCTTGTTAACATCTTCTGGATGTGCTAGTAGTCCTTTCTAAGGGAAATTATGCAACCAAACAAACTATTAATCAGATCAAAAACGTCA---TGTGCAGGCCTACAATATGCAAATGTGCAGATCTGGAAGGACTTGAGGCAG-CAATGGCCTTTGGCTACAAAGGACACCAAGAGGTACTGCTCTTGTGTGCACCTC----------------------ACAGA-AAGGACAACAAGGCCATTGTGCCTGTTCA----------------GAGACCTCACCACCTCAGGGTAAGGGCCAGAGGAAATATTTTGGTACACTATTTGAACTT-TCTAGGACTACGGAGGGAGCGAGGGGCTCCGTGACTAATGCAGGACTCAGGAAAGCTGTGTAGAATTTTACAAAG-------AGAACTCTC---TGTCCTTAGTGTTCTTGGGTGATGTAGCTGGCAAGCGACTTTCTG-AGAACTGGAGCAGGTTCCCTGTATGAAGAGTATGGAGTGTGCTTCG--TCTGGACTTGTCTGGCTCGGTCTCGGTGTGTCTCCTTGGAGGACTACTTGGGGGCCTGTGAGAGGACGTGCAGAAGGCTGTCTTGCTCATTGGTGCTGATGGATGGTAACTCTG-------------CTG---------------TGAGGGACTGTGCTGCGGG----------CCCGTGGTCCCAGGTGTGCTCCAGTTTCATCGCTGGCTCAGCCTGGCCTTGGCTCTCTCTTGACGCTTTATTGCCCTGGCAATGTCTCTCCATCTCACTGGCTGCTTGCTCTCCCCACTGGGTGACTGTCAGTAGCACAGCTGCTGACAGA-GTGGTG-TGCGAGCTCCCCCTTCTCC--GGTTCTAGGAtttgtctgtctctcccaagagcaatccttgcttgtctattttatttttgttttgtttttgtttt
s HiC_scaffold_1 112072497 967 - 233722169 GAACAGTGTTTGTTAAAACTGACAGAAGTGATAAACTAGATTTGTATTTGTTCTATCATTATGGAGGAAGGAGGGTGCTTTTAAGGTCCTTTGGCTGTGTTGAGGGTCCTTGTGGAGAAAAATTATGCAA----ACAAACTACTGATTAAATCAAGAGTGGCCACCCCCACAGAACTACGCTACGCTCATTTGCTGTTCTGGGTGGACTTGAGCCAGGTCGTGGTCTTCAGTGGCAAGGGATCT-----ATTCCAGCTATTCTGTGCACAGCTGTCTACTTCCTGGTAAGGAAAGCAGGTAAGGACAAGAGGGGCCTTGTGTGCAGTCACCCATGGGGAATCACAGAGGCCTCCCTGCCTTGGGG-AAGGGCAAGGGTGGTGCTCTGAATACTTTGCTTCCACCCATCTGGGAT----GATCCATTGCAGGTCTGGAGAACTAA-ACAGGTCTCAGGAAGGCAGTGCAGAATTTTCCAAAGTTCTTATAGATGCCTCAAGTGCCATTAGAGGTCTTGCATGCTGTA---------TGACTTCCTACAGGGGTGAAAAAAATCTC----ATGAAGATTATGG-GTGTGTTGCAACCCTGGTTTTGGCTGGCTGAG----GGCACTTCACCGTAGA---CCACTTGTGGTCATGTGAGAA--------------TGGCGTGGCCATTGACGTTAATTGGTGCCAATTCTGGATCCACCTGAGCCTGATGTATGTACACAGACGAGGGGTGGTGTGGCGAGGGACCACTGTTCTTCTGTGCCACGTATACTCCAGGTTTGTCCACAGCTGGAATCAGGCCTGGCTCTC-ATTGATGCTTTATTACTCTGGCAGT----TTCCATCTCGCTGGCTGCCTGCTCTTCTTGTTGGGTGACTTTCAGCAGAACAGCTGTTGACAGACATGGTGCTTCACACTGTTTTTTCTCCTTAGCTCaaggattttcttctctttcccaagATTAATCCCTGCTTGTGTtggttgctttctttctttctttttttt

a score=48327
s chr3           101978248 2844 + 160039680 GAAAATTCTCAGCCTTATCAGTGGTTGGCCTATGGCTCTCAG--AAATAGCACGTGCTCCCAGAGAACCC-TAAGTCTGTGAGCTTAGTGTG------------------TGTATATATATATATGTATGCAGAGGGTGGACACACATGCACATGA-----------------------TGTGTTTTCTCTGGCTTTCCTTCCCAGCTCCTGGAGCCTTTCC-GTCCGTTTGGGCATAATTATGATTGCTCTGCTGGCTTGGTTCTGCAGCTCTCCAGAGTGGAGCAGATGTCGACAGCTCTGAAAGATCTTGTGCTATTACACAGCAGAACAAATGAGAATGTCAAAAAAAGGCTCTTCAGTCTAACAAGAAAACAGAGGAAGGAGACAAAAAGGATAAAGCCTTGGGAGACCCGCAGACGCGCTCTGATTAGATCTTATGCTAACTCGATGCCCACTCTGCGTACCAACAGCGACTTAATATGTTTAAATGAGATGGGAGGAAAATGTGTCTTGGGGGAAAAACAGAGAAAACAGAATTTCTTCTCTGGCAGGCATGATTAAGATAGTGTGAGGTTCCTTGCAAAATGTGCCAGCAGCCTCAGAATGTCATGTGCTGTCCCAAGAATACTTACTTACAATGCCTGGTGCTGTCTCAGTGTGCTGGGCAGAGCTGACTTTCCCCACCCCTGGGTGAGAGAGAAGGGAAAACTGTTCAGGTGGCTTCTGGGACTGGAC----------ATGTCCATCTTGCTGGTGGTCATTGTTTCTTTCCTTACTAGGAAAAACAAGGCTATAATTTGAAGATATTTTttatttgaagccatcagtctacaaatctcaagtatctacacaacaaagatagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagggaaaggaaagaaaaaagaaactctagaaggttttgggagggaaaggaggtcctaaccaatcaaaatggatgaaataatgtccatg---tatgtagatcatgtaa-----ttttctgatgcaatatgtcttcagccccCAGTGCTGGATGTAATTGTTTATCTTCAACTTCCAATTATAATTGCTCCTGTTGCAGTCAGCTCTATCAGT-----------------GGAAATGACTTAGCAG------CTCTGGGATGGGGACATGGATTGGAAGGCTGTCACATGCAAATGAATCCTGACAAGAGGTATCCAGTAAGGTGACAGGAAGTGAGATGAC----AGACCACAGGGAGGCGGAG---GATTT------CTTATTCATTCAGATATTGGTTCCTTTAGTCCTTCCATGCCCGAGGGCTGATCTATAGCAGCCACTT-----AGGGCTTTTGTGAGCAGAGCA------AGCGCATACTTCAGACATCCCTGAGAATAAAGGTTAAAAATCAAAGCcagacatgtaatccaggaatttgggagacaggggaaggtggatctctgtgaactcaactcccatatggtctacatagagctgcaggtcagctagaactcttactctgtctccaaacaagcaaacaaacaaacaaacaGAAAGTCTGagctgggcatagtagcacacacttttaattcaaggactcaggagttaggagcaggcagatctttgtgagttcaaggccagcctggtctacatagtgaattacaagacagcagagatacatagtgagattcttgtcttgaaaacaaacaagaAGTCTGAAGACAAATTAAAGACCAAAATAATAGAAATATAAAAGCAAACG--TTCCCAGAAGAAACAAGTTATCAAGGTCATTGTTGAAAAGGAAGACACTAGAGACCCCTGGG-------AATCCCCCTGTGTCTGAAAGTGTCTGTGATTTGACATAGAACCTCAAAGC--------CCAGCGTCTGGTCCTGAAAAGATTCCAGGATGGCTGTGCTGTAGGTctcctaatgctggggcctcagtctctggggacattctaatccattgttagaatgctctagt-tattggaaaacctgggttt----------aaagtcctttgtaacttccccctttatccctggctctgccc----AGTTCCCAGTGAGGTAGGAGCTAAGCTTGCTACAT---ACAGGACAGGGATCACAGTCGTCCGTGTGAGCATCACCTTCCTCATCTTTTTATTTACttatttactttgagaaaggtctcactatgaagccctggctggcatggagcttaccatgcagatcaggctggccttgaacagagatctacctctgactctccctttgctgggattacagtcttgcactgccgagctgggaggcttcctctggactct---cagcctcTTCATTACACTTGAAGCTCACAAGGTGctatcaattcattttgaacttagagtcaacggaaccatctctatcattctcatcaaggctctggtcaagcagcatctcgtaggccatctgccatgcatctcgtagaatttgcttgtttattttaacc-----------------------------acacgtaatcttgttggactggacccactgtttcagtctatcagagctcttattgcactatggctccgctatccagtgtactagccggcccttctagcttcctgtattagccggcccttccagcttcctgtcatccacaaa-tttatcaccgggccatcaatgtcttcatcaaagacattaataaaaatgcttaataaggcgagacggaggccagaagctggtggagtacaagatccctcctggagatagacaccaatctattaattaacactttgcatctgatcagttgctcatctacctgacttggctgccactagtccttgt--ctgaggtgt-tcacatctggagggaccaagattctaccaggc-actgcactgccagcatccaaaggcatcaggtc
s HiC_scaffold_1 112074789 2383 - 233722169 GAGAACCCTAAGTCTGATCAGTTTCCAGTCTACTACGCTTAGGAAAATGTTTTGTGTCCACAGTGCATATATAAGCTTACAGCCTCAGTGTACGCACACGCGCACATACATGTGTACCCACATGCATACACAGAGGctgcacacacttgcacacaaaTAAGAATGCTATTGCACGAgtctatttttttcctgtctt-ccttctca--TCTTGCATCCTTTTCAGTCCATTCAGGCATAATTATTATTGCTCTGTTGGCTTGGTTCGGCAGCTCTCTAGAGTGGAGCAGATGTCGACAGCACTGAAAGATCCCATGCTATTACACAGCAGAACAAATGAGGATGTC-AAAAAAGACTCTTCAGTCTAAcaagaaaacagaggaaagagacaaaaggaaTAAAGCCTTTGGAGACCTGCAGAGTCGTTCTGATTAGATCTTATGCTAACTTGATGCCCACTCTGCATCCTAACAGTGATTTAATATGTTTAAAT--GATGCAGGGAAAATATGTCTTGGGGAAAAAAGAGATGA---GGAATTCCTTCCCTGGCAGGCATTATTAAGATGATGTGGGCTTCCCTGGAAAATGGGACAGGAACTTGAGACCATCACGTG-TGGTATAGGCATGTTTATGTACAGTGCCTGGATCTG-CTTATTACTCTGGGCAGTATTG-CTTTTTCCA-CACTGGGTGGGTGACAGGCG----CTCCTCGAGGGCTTGCTGG--CTGGGTGCATAGCAGAATGTCAGCCTTCCTGGCTGCCATTGCTTCTTCGTCTAGTGCGGGAGAC----------TCTAAAAACACTTTACAATTGAGACC--------ACAACTAATAATTATTT------------------------------------------------------------------------------------------------------------------------------GAGACAAAGATAAAACAGCCCag-------------aattttagaaa-----gagaaagaaggatgtCCCTAAGCAATCAGAGTGGATGAACCCAAATCTGTGAATTATATAGATTACATAAAGCAGTTTACTGATGGAAGATGTCATCTGGCCCCTGTTCTGAACCTGTTTATTCATCTTCTCATTATAATTCTAACT--TCATATCACAGTTCCTTCTTTCACCAGAATATAAGTAAAACAGGAAACAATTTAGAAGGAAAAACTCTAGGTGGGGCAGATGGAATAAAATATGGTTACACTAATACCAATGATATAAAAA-------AGTGATATCACCAACAGTGAGAGGACATAAATATTGTAGTGAAGCAGAGAGCAATTTATATGGCTTGGTTGTTTTCTTAAGGGTTCCTTGGATTCTTTCA---CAGTGGGCAAA-----GACAGTTACTTGTTGGGGAGCTTTTGTTACATGAGTAACAAACAGCACATACTTTCAAGATCcctgaaa---------------taaaactaaaactgcAAACT--------------------------------------CTCAACTTC--------TCACAAAAaagt----------------------------tctaaaaaagaaaaagcaaaacaaaacaaaaaaac---------catatt-------------------------------------------------------------------CCTGGCTGACACAGGTTATCA-------------------------------------------------------------AAATTCATTACTGAAATGTAATAAATAGAAAACCAGTGGGTTTCCCGTATGTCTAAAGTTGCCCAGAC-----TTTATAATGCATATGTTAGAATCTGTTTAGAAGAATAAATCCTCTCATG---GAATG-----------------AGAACCCAAAAGCTACCTCATCTAGTATTTGTGGCTGACAAAAATTTAACA-GCCCATGCT-TGGGTGACTTAGTGACCAGGATTTCCTTCCAGGCAAGATGCCAATCCATTGTCAGAGTGTGCTAATAAATTAGGAAGTCCAGTCTTGTTGGCCCCAAATATACTTTGTAATTTACCCCATTGGCTACGGCGCTGCCCTCTGGGTCCCTTGGGAAGAATAACCTAAGAGTGTTAGATGTGAAAGGACAGGAATCACAAC------------------------------------------------------AATGTCT-------------------------------------------------------------------------TTCCCCTGTTGCC--------------------------------GCCTCCCTTGTATCCTACCCTACATGTCTATTACACTCCAAACTTACAGTGCACTAATGATTCACTCTGGGCTCATAATCAGCTGAAACATCTCTATCATTTTCACCCAGGCTATCATCAAACCACATCTCTC---CCATCTGCTGCTTATTCCAt-gtatttgcttgtttattttaacCAAGTGTAAGGCTTTACATTTATCCCCATTAAGCATAATCTTGTTAGATCTGGTCCATTGTTTCAGTCTGTCAGATCTTTT-TTGCATTGCAATTCTGCTGTCCAG--------------------------TGCATTAGCTATCCTTTCCAGCTTTGTGTCACCCACAAATTTTATCACT-GGCCATCAATGTCTTCATCTAAGACATTAACAAAAATGCTTAACAAGGCAAGACCAAGGCCAAAAACCTGTGGTGCAAATGATCCTTTCTTAAGATGGACATCAATCTGTTAATTAGCACTCCGGATCCAAGCAGTCGCTCATCTCCCTGATGCAAGTG-CGTCAGCCCTTTTCCCTTAGGTGCACCTCATCTCCAGGTACGGAGATGCTGTCTGCCAATTGCACTGCTCTAATGCAGATGCACTGTGTC

a score=16743
s chr3           101985431 896 + 160039680 ttcctggggtccagaggggattaaatttgcttggtacacactgtggaattgctttataaTGCAACCCCCAAGGAATGACTATGCATCTCCTATATGCC-GTCTGGTTATTAGATCAGAATTGAAATCTTGTGTGACCTTGTTTTTCATCTGCTGTGTAATTTGGGAGTGGGAGGCAGCAGAA-GCTCACAAATAAAAACATTTCCCTGCTAATCACGAAGCTGGCTGACTGGTGTGCACCACGCTTAACATACGATCAGTAAGGCCACATAAAAATAAACAAACCAGAACAACTGTCTCATTGAGGAGAAATCGAATCCTGGGAGTCACAGCCCTCTTCCTAACCCTTTTTAAATCATTGGATCTTAATCATCACAGAAACAGATGGCAGCGGGAGGAGGTTGCAGCCAGTAAGGAAAGCAGTGACTGGTCTGTGTCCAGCA---------------AGCGGGTGGTAGA-------GAACCTGTTATAGACGGTGGATCTAAGGCACATTAAGTAAGATACCACTGTATACAGAATCAATGAGACTGCAAACACAGAAAAACGGAAGTGTTCTTAGTGTTGGCTTGGCTACTACC-TCTCCTGTTAATGCTAAGGCAGGTGATGCAGGAGGTTCTAGAATTGCTACAATTG-ATGCAAtagagtcaggctgcctgggttcaagtctcatcactcacctgactagtcgtgCCCTAGCCCGTGTGTAACTCCTCCATGTAACCTTGGACTCTG-TTCAAACTCAAAGGGCAGCAAAGAGAACAAAGGAGT----tgtgtgtaagctcacagtgccgtggccaacaga--gagtgctcagcaaatggc-aAAGAAACCACCAAGTAGGTCATTGCTGCCCTCCCCACTGTTTCCACCAAACTTCTTTCCCTCACA-----GTCAGTTACATTTTCAA
s HiC_scaffold_1 112085265 904 - 233722169 TTCTGAAGGTTTGGGGAAGATTAAATTAT----ATATGCCCTGTGAAACTGCTCTTCAATGCGAACCTTAAGTATGGCTAATTTATCTCCTGTGCATAAGGCTTGTGATTTTGTGAGAATTTAAACCTTGTGTGAC--TATATCTCTGCTGCTGTGTGATTTGGGGGTTGTAAGGTGTATCACGTTCACAAATAACAGCATTTCCTTGTTAATCATGAAACTGGCTATGTGACGTGTGTGACATTTAACACGTGATCAGAAAAgccacataaaaataaagaaagcagaaCAACTCTCGAA---GGACAAAATCAGATCTTATGATTCATAGCCTCTCCTTTAACCCCTCTTAAATCACAGGATCTTGACTTTCACAGAGACAGACCCCAGTTTGCGGAAGTTGTGGCCAGT-AGGCACACAATGGCAGGTCTGTTAACAATACAGGGGGAACCATGCAGTAAGTGATCCACTGTTCTGCACCTGTAGTACATggtaaatcaaaaccacagtatG---ACTACACTTACATGTGGAAACCCT-agttagaaaagacagaaacgTGACATAGAGgttgatgtttattttcttattgctgtttccccttaa-------------aataaaagaga--ctaTGATAGCAAAAGGTATATGCTGGAGAGTTTAAATAGTTGAACTTGATCCTACTTTCTCAACTGTCTG--TATGTTTCAATCTTTCCACATCTTGGTTTTCTAATGTTAGACTTAGTTTCAAGCTTATAAATCTGCACTGAAAATAAAGGGGGGAAATCTATGTACGCACTTAACATCATAAACAATAGAGTGTGTGTTCAGTGAATTACtgtttaaaatattgaataaattgctcttatcatcattattatttccaTCTCAATATATTTTCTAACAAAAATATCCATTACATGGTTAA

a score=93276
s chr3           101989899 4925 + 160039680 [encoded data, 5323 characters]
s HiC_scaffold_1 112100724 4902 - 233722169 [encoded data, 5323 characters]

a score=17691
s chr3           102000607  993 + 160039680 TAAGAGAGGATGAGGAAAGGAAAGCA-------------GCTGCCTCTGTCCTTCCCACCACCTGAGGCTCAAGCTGAAAGCCACTGCCTGTAATTC-TCCCAGTCTTGGTTGTTGTCTTCTGAGATCCTGGTCTCTTGGGGACCCAGGATAATGGTGCC-TTGAATCAACATGGCTGTTT-TTCTCCCTCTCATTTGATTCCTG-TTATCTGCAGGTTATTGGTAACTGGCCACAAATGGCACTAGCAGTGATGCAAGTTGGAGACCTTTCCAGTAAACATGAAAAAGTGGCTGTCCTGCCCCACCCACAAAGACTTGTGATTG--GCAGAGCTC-CATCCACATTTCTTCAGCCTTAGCCTCTCCTCCAGTGCCCC-TTCACTGCTGGGCCTCTGTCATAAATCTTGAGAGTAGCAGGCTTATCTGGAGACTCTT-TTCTCAATGAAATAGTAAATT------AATCAGCATTTGTGTGTCTATATACATAGTGTATGTGCACACTTATTATGTAACACATATTTTTAAATCAAGAAAATCTAGTGCTTTAAAACAATGCTGGCAATAAGTATATTTGCCAGCAATCA-CTCATACATATATGTAAATACATATACAAAACAAAACTGATAGAAAGTGACTATAACTACC--TGATTTGCATGGCTTGTT--TTTCAAGGGTCTTTTCTAACATTTTCTAAGTGTTCCCAACAGTTTCTGGGATTTGTAAAGCAGGAGTTAGCTTTCACA--------------------TCACTGAC---------ATTCTTACCTTTGAGTTCAGCAC-------TGCACTGTCTGCCCACGTCAAATCAGTGATTGTAAA--CTGCCATCCAtatgaacaataatgtcctgatgtgataggcacactgtggctctgtccttgtt-tcagcaaatagacactgaagggtt--tgaaaataggagtaaaggccattgctcattcccaaatggtt---------AGTACACATTTTATCGTATTTATTTATTTAGCTTCCTTTGTGCTGGTCTCAAgtgtgtgtgtgtgtgtgtgtgtgtgtgt
s HiC_scaffold_1 112110403 1012 - 233722169 taagagagacagagagagacagaggatggTTTCCAGGAGGCTTCCTTTGATGCTCCTACC-CCTGAAGCTCAAGTTGAAAACAACTG--TGCAATTCCTCTCAATTTCTGCTATTGGCTTCTGAGTTCTTGGGCTCTTGGGGATTCAAGGTAACAGTGCCATTAAGTTGACGTGGCTGTTTCCTCCCTGTTTCATCTAATTCTGGATAATCTGCAAGTTATTGGTAATTAGCAGCAAACTGCAGCAGCAATGCATCAAGCT-CAGCCCCTGTGGGTAAATACAGCCAGGCAGCAATGCAGCTC-----------------GATGGCCGCATAACTCACCGTGGCAATCCTGGGGCCATATCTTTCACTCTCTTGCCTTATGGACTATTTGGCTCTTTGTATAATTGTAGATGATGTGATGCCTctgttaagatttttcttttcaatgcaaGAGTAAGTTTAACCCAGTGGAAACACATAAgcccacagaca-----cacatgcaca--------------------tttaGATTAAGGCAGCCTCACACTTTAAAAAACCACTTATAATAATAATACTTATGAATAATCACCTCACACATgcatacaaat----------aataaaattgatgaaAAGTGATTGAGACAATCTTTAATTTATATGACTTCTTTATTTTGCCACTCGCTTTCAACATTTTCTAAATGT-------ATATGCCATGTTTTGTATAA-AGGAGTTAACTTTCATAGTGTACATGTGACAACTCGGGTAGTGACATTTGATTTATTCTTGCCTTTGACTTCATcacttttacatttattatctGATCAGACTAAGTCAGCATCTTTAAATTCTGCTGTCAACATCAACATTAATTTCCTGATCTAACAACTGTTCAGTGTGTATAATCTGGTTCTTAGGAAATGTATATTGAAGGTTTGAGGAACAAAAGAGTACCATTTGCTACACACtgtgaaacactttttaaaaaaagaccatatgcttatgtatatatatatatatatatatatatatatatatatattgtgtgtgtgtgtgtgtgtgtgtgtgt

a score=287535
s chr3           102006801 10180 + 160039680 [encoded data, 10973 characters]
s HiC_scaffold_1 112134586 10112 - 233722169 [encoded data, 10973 characters]

a score=4051
s chr3           102012901 152 + 160039680 CACCCGCGAGCGCATCCGAGTGGAGGC-------TTTCAACCTGGCCTTCGCCGAGCTCCGCAAACTACTACCCACGCTGCCTCCGGACAAGAAGCTCTCCAAGATCGAGATTCTGCGCTTGGCCATCTGCTACATCTCCTATCTCAACCATGTCCTGG
s HiC_scaffold_1  66406244 152 - 233722169 CACGCGGGAGCGC-------TGGAGGCAGCAGAACGTGAACAGCGCCTTTGCCAAGCTGAGGAAGCTCATCCCCACCCACCCTCCAGACAAAAAGCTGAGCAAGAACGAAACGCTTCGCCTGGCGATGAGGTACATCAACTTTCTGGTCAAGATCTTGG

a score=77799
s chr3           102021013 4882 + 160039680 [encoded data, 5788 characters]
s HiC_scaffold_1 112144901 5323 - 233722169 [encoded data, 5788 characters]

a score=13555
s chr3           102025939 1463 + 160039680 AAACCAAAACCTGTCTCTG--ATGTACGTGTACATCCCAAACAA-ATAAAAAGGACCAGGG-CGCAGGTGATG-TTTTTGCTTGTAAAACAAAAGAAAGTCATGAAATTGGCAAAAAATGAGGGTCAATTCTAAAAGTGAATAGATGTTTCTAAA---------------------GTTGGTTTC---AACCCCCGCCCCCTCCTTCCATATTAGTTCTCTTGAGGTTGTGTCTCA--GTACAGAGATGCAG----------CGG----------------TGTGGTTTTCCTAAGCTAGGAGCCTCGTATATGCCCTCATAACCCCTCACACCAGCTTTTAGGGTAATACGGATACGGCCATAC-ACAGTGGTGTATTTATTGCTTTGACTTTTCTTCTATGTTATGAGCTTGATGGAGGCAGGAAATCTGACTTATTAGTGCCTGTGGTGGGCCTGGTAGATGACAAAGCCTCTGTCAATATTTAAATAACGAACTGGAAGAACACAGAGGCAAACTCTACAAACCGTTCAAGATG-TTGACCA------------GGaggaagaaaaacgttgatgatgtcattaagcctgctgttacagggaatgacagctgtgacctgtgaagaacaaccaccgtgggaaaggcacttg----gtaacactcgagagaaagtCTTTGTGAAGAGCCTCAAGAATGAAATGTGTTGACTCGCCCATGCACCAACTGA----ATTCAGTTGA-----GTTCAGCAGATACGTAGTGACCACCTGTGC-CAGTGTGCCTGTATCATAAGTCCCAGGAGTTGTGAAAAAAACGCACATTTTAAGGCATGGCAATACATATTTTATAGAAAGTACTTCAAACCTGTTTGTTTAGAAACCTGAAGAGGAAAATGTCGATAGTTCACATAGAAAACATTGTgccaggcgtggtggcgcatgcctttaatcccagcactcaggaggcagaggcaggtggatttctgagtttgaggccagcctggtctacaaagtgaattccaggacagccagggctattcagagaaaccctgtctcaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaagaaccaaaagaaccaaaagaaaaaaaacaaaaaaacaaaaaaCCATTGTACACCATGCTGAAGATTAAGGGATATCAATATTCACAATTTGaattatgtaatgttcacatttcagcaaagcaaaaccttggtggagtatagccatacccacctggtatgtgtctttatttgtgattgtccttgaactacagtggtggagttcagaagtggcagcaaagactttatgactctcaaaacttaaaaatcgttactccctggctccttgaagaaaGTACACCAAACCGTAATGCagagaatgaacctcagcatcagtgt-ctgctctcagact------ccaggaccacagcgacctgccagccctgagaccaaaaggaagtcactaaccatgcttacctcgat---gtcttctattcaaagggaggcagcaacagtgccttctttcggggacttgtggaagaaa
s HiC_scaffold_1 112150650 1252 - 233722169 aaactaaaatgttTCTCTGGCATCTATGTGGACTTCCTGCATAACATGAAAGGGATCAGGGGCACAAGTAATAATTTCCGCTTTTTACACTT--GcaagtcactaaattgcaaaGAAAGGATGATCCA----GACAGTAAATAAGTAACTCCAAATAGTTATAGTAACTCTGAATAAATAGTTTTGGAAATTCCCCACCTCTGCTT------------TTCTAAGGTTATGGCTTATAATACCAATATGCAAGACTCAAGGTCAGGATTATTTTAATAGACTGTTATTTCCCTGGACTAGGAAGTTTCTATGTGTTCCCATAACACT--ATACGAACTTCTATCACAGCACTAATAACACTGCATGATACTTTCCTGTTTATTTTGCTGACTTTTCT-CTAAGCCATCA-----------------------AATTATCAGCACCTTTGT------------ATAATGAATCTGCACTTAGTATTTAAACAATGAGCTGGAAGAACATCGTGCCAAACTTTGCAAACTGTTCAACGTGATTTAACATGGAAATCTGACGGGAAAAGACAAATGTGGATGAAGTCATTAAATCTATTATTATGGAAGACAATAGCTATGGCATATAAAGAACAATCACAgcagaaaaggtttttttttcgtTACG---AAGAGAAAAGAGTTGGCAAATGCTAAAGAAATAGAATGTATCATTTTGTCCAAATGTCAGTTCAAGTCATTTATTTGAATTCTATTCAACATCTATTTATCTAGAACCATTGTATATTGTG--TATAACATGAGT------AACTATAAAAGAAGCATGCAATGTTGTTTAAGTCAATAA-----CTACAGGAACCATTTAAAACTTTGGTGTTTGGAAACATG-AGTGGAAATTGTAAATAATTCATATAGAGAGCGGTACAGAA--------------------TAATTC-----------ATATAGAGAGCGGTGGGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGTTAAAGGTTGACAGTACTTATGATAAGAA-----AACTATACAAACTTCAATGCACATAAAGTTTATTTGAATATAGTCACGTGCACTtatcttttgt-gttgtttttcattgttcttgAGTTATAGTTGCAGAG----------------------TTGTGGTCCACAAAACTT-AAAATTGTTACTATCTAACCCCTTACAGGAAGTATCCCAAACC-TGACTCAGAGCAAGAGCTCTAAAACCAGAGTGCTGCAACTAGACTAAAATCCTAGGGTTATTACAACTTGCCTGCTGTAAGACTTTAAGTTATTTACCTATTTTG--TACCTTGAtttcatcatcta-taaaatgggtataGAAACAGTACCTTCTTCAAGGgatctttgaaagaaa

a score=6614
s chr3           102037260 172 + 160039680 CTGTAAAGTAACATTTTAAAACTATATTCTAAGAATTCATTTGATTACTCATGCATACTAAGAAAAAGAAAGTAAGCCATAAGCTCCCGACTTGAGTTTACAGAATTCAGTCTACAATC-----CAGTGTTATG-GGGAGTGAAAGACAATGCAAGAGGGCCAAGCTACTTGGGTCAG
s HiC_scaffold_1 112159843 178 - 233722169 CTGGAGAAGGACTTTTATTAATTAAGTTTCAGGAGTTAATTTGGTTACTCATGCATACTAAAGAAAAGCAGGGAGGCTATAAATTACTCAAATGAGTTTACTGAATTCAGTCTATAATTGCAGGCAGTAATTTGCGGAAATAGAAAATAGTGTAACAGGATCAAACTGCTTCAGTGAG

a score=13198
s chr3           102038239 608 + 160039680 CTCTCACTGGATTTAGGACTAGTAAGAGATGTGGAGCCTG--------------AGCTACAAGTGAGAACAGGAGGGAGGCACATGCTAAAAAGATTT-------TCACCTTCGTGTGGTGG-TGCCTAA---AGCCGCAGAACCAG-----------GGAATCTTGGCTCATCCGCCACTCTATGTAAAGTCTGAAGATCAG-CGCCTTTAGAAGTTTCTAAA--ATCAACTGTGATGAATCTCTGGACTTTAGAAGCCTGACTTGGTCTTGACTCTGGTAACTTTCCTTGCA------------------------------------------------GCTCCGTCTTACAGTCTTGGTCCAACCCCACCCACAGATGTCTTCCTTTGCTGCTGCCGCCACC-TCTCTCCATTTGGCAATCCACTCAGTGTTTGCACTGTGGGGTTGTTTTCTAGTTAGAAGGAGGTGAGATGTCTCTGACAATACCAGTCGCTAACACAAGCATAGGACAGAAGGAGGTAGAATGGATGAATACATTAAACCTCAGGGAAGTGCAAGAGAAA-GGTGAATAATTACTGCTAAATGACTCAGGAAATAGTTCATGGGAATTTTGTCTGTGCTGGGCCCCTGTGGACAGGTTTCAACAGGCAAAGGGAGAAAAAGTCACTCTCACTGAAAGGCATGATGTAAGA
s HiC_scaffold_1 112161204 663 - 233722169 CTTTTACTCAACGCAGAACAATGCAGGAATCTGGAGCCTGTGCTCAGGTCTACTAACTACA-GTGAGAG-GGCAGAGAGGCACAGGTAGAAACTGCTTCCACTACTCACCTCCTTGAGGCAGCTGCCTCATCAAGTGCTGAAAACAGTTCATGTGAAAATAGTCTGTACTCAAAGTCCACACCCTGT-----CTGAAGAACATTCACCTTC-------CCTGAACTATCGACTACTAGAAATCTCTACTTCTTAGCAGCTGGTC---ACCCTGACTCTGATAAACTTCTCTTCACCAGTGCCCTCACAAACCTATTTCTACTCTCAGGACCTTTCCTTTTCTGCTCTGTCTTGCAGG-TTGGTT-AGCCCCACCTACATATTT-----TGCACTGCTGACACCAACATCCCCAGACTCAGCTA---ACTT--TGTTTGCACTGAGGGATTATTTTCTAGTTGGAGGGAAGTAGGAAGTCA--GATAAGAGAATTAGCTAATACAAACA---AGCTAAAAGAAGTagaatggaaatataaattaaacctGATGGGAGCCCAAGAGAAAAGGTGATTAATTATGATTAAGTGAATCAGGAAATGCTTCATGGAAATTGTATTTGTGCTGGGCCTCAGTGGGCAGGTTTTAACAGGCAATGTGGGGAAAAGGTATTTCAAGGAAGAAGAGTGATAGAaga

a score=87289
s chr3           102047100 4273 + 160039680 [encoded data, 4724 characters]
s HiC_scaffold_1 112166413 4172 - 233722169 [encoded data, 4724 characters]

a score=5625
s chr3           102052432 142 + 160039680 TATACCCAATCACAGGTCCCCATGGTTGCCTATTTTTTATAGATCCTAAG-ATAAAAATAGAGTTTTCCTTGGTCTGTTAGTCTTCAGTTTGAAGTCTCCTCTGTCATGTAAAACTGTGAGCCAACACATTTGCTACACTTTT
s HiC_scaffold_1 218071077 143 - 233722169 TGTGTCTAACCATGTTTCTCTATGGATGCCTTTGTTTCATTGAATTCAAGTATAAAAACTAGGTTCACGTTGGGTTTTTGATCTTCAATATGAAGTCTCTTGTGTCACATAAAACTATGACCAAATAAATTTgttatgctttt

a score=55205
s chr3           102054992 2955 + 160039680 CCCAAAATGGGTTCT---TCCCTTTCTTAAATATGGAGAAACCCAAACATCTTAACTTCGTAACAGTCTACATTCGTGAGTCTCTCC------------------TCATAAGAGTGCAACCATCAGTGTTAACTC------TAGACAGAACAGAATCGGTTAG-ACACTTTCCAAGAAAGAGAAAAAGACAAGCCTGCAGGCATATGACTACGGCACAGCCGTGGGGACAACCAACTTGAAATGTAAGTTTTGT----CAGACAAAAAAAC-------------CACCAAGTTACTTTTCCATCTTGGTGAGAGGACCTAATGGCTGTTGCTTAAACGGGATAATCTCAAATCATCAAATCGTTTCCTCTCCTATTTTGATGGAGAGCAGTGTGTAGCAGAGCATTAGCCAGCTCTGTGCCATCATCCCACAAGGCTAGCCTTGGATAGGCTAGGAGCCA------GGGAACCTCAGTGAGCTGCTTCAGGAAGTCGGTCTGGCCACCCAGGGTTCCAGTGGCTCTTGTGTG------GCACTGA----------CTGGAAGAAGCC--CTTTCTTGTCCAC-----TGGACACTGCCGTTCTCCTGGACTCCTCTTGGGAAGTAAAGGGAAGTAAATATGCCTTCTCTCCTCCCTGTTGTGGCAGCATGAACCGGCTC--TATTTGAATTTTAGGCAAAGTAAGTGAGAACACTTGTCTTTTAGTAATTTCTTTTAATGAAAGTCTTGCACAGCAGCCCACACAGATGGGTAACTCTGTACATTTCACTAGAATCAAAATGCTTCTTTTTTTCATCCTATTTATATTTTCTATTTTCCAATTTAGACTTATAAATGTAGTCATTGGAGGAAAAAAAAAAAGATAACCTAAGCCTTTGGGCCTAATGTAGGTTTTTTTTTTTCTTAATTTGGTTTTTGAAAAAAAAAATAAAAAATGACATTGGTCTGACTTCTTTTGTCTGAATAAAAGCTTAAGCTCAGTGTAAAAGGGTTGCATGTGCTGAAATGTTGCCCAAGGATATATGTTATTATTCCTCCCCCCTTGACCAGCAGGGTCT-CCTTCTCTTTCCCTTTCAGCCTTTTGTTTGAACAGATGGGGTTGGGGAAGCTGGGGGAAGAAAGGCATTCTGTTCTCATTAACTCTCCCCATACACAAACACAACCTGGGCTTCAGGGACTCAGGACAGAGACAGCTCCCACTCCATTGCCATTGAGACCCCAAGTA-GGAGATACAAAGGAAGCCGCGCTGAGGACAGACATCACCATATCAATGCGACT-GACTGCTAACCAGAGAGATGGCGTTTATGGATGGTTTCAGAAATAGACTCAAGCCAAACTAAAACAAACAAGCAAACAAAAACCCACCCGTGTCTCTGCCTAACATAGGACACAGACAATCACTATTTGAAAAAATTACCCAAATCTGAAACATATACTTTATCTCAA-TGTATTCCTTTCAGACATTCTTTCATTGCATATAATGATATCTTAAGAGTATGATAATA-AATTGTGGAGACTGACAAAGTTATTCTATGAACTATTTGGTTATTTTACTTTATATGTGGTAGAGTTAAAAGCTCAAAGATGAAGACC-TAGAG-------TAGTGAGAGCTCTTTAATTTCAATGTAATGTAATAAAAATTATGATTAAGGTTCTCTGTGTGAGTGATTGTGCCTATTGG------AGTATTCCTGACCAAGAAAAGAGTTGCA-AAAATTAAAAATATGGTCTGAATGCTGAAATCACCCCCTTTACAATCCTTCTGAAAGTCTAAGAATCCATGG-TATTTT-GAAGAAAAGAGTAAGGTTTCAGAGAATGAAGT-GAGATTGTCTGTCCTGGTGAGTTAA---------------------TTCATGGGTAAGACTCTCTTCCCTCTGGGTTACAGAGCTGTTG-GTCCTCTT---------------ATTTTCTGTCTCTGCCTATCCTCACTGCTGGGATAAGGACACTGGGGCGGGCAtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagggagagggagagagagagagagagagagGAGTGTATATGTCTgtgtgcctgtgtgtctgtgtgtgtccgagcatgtgtgcatgtgcgtgtgcgtgtgtgtgtgagtgtgcctgtgtacatatgtgtgtgagtgtgtgtgtgtgaatttgcaccca----agctcacaggttgaca-----tcagagcccag-ctttctggaacagcgtctttctt----tcctctaggggttccagagac----agctctgcctgtcaggcttgtacagcagtcattttacccactgagacatctctctggccTTGCCTGGCCTCTTTATTGTTGGGTCTCCAAACAGGATTGGG------ATATTTGTCTCGAATGACAAAGCTTTTCCAGAGGATAATCAATCCTTCAGAGTTGCATCAAGCACATCTTGGCGTTTGTTGTTGGTATTTAGGTCGGGTTACTTTACTGACGT-------------------AAGTCCCCAGTTTGAGTCTGTGATC---AAAACGAGACAGAGGACAATTGTTATCCTTTATCAGCAATTGTGAA--------ACCATGAACTCA--AAGC-------TCCAAGTGACCTGTTAGAAATGAAACGGTCAGCTTCCCAGATAGCCTCAAGTGGTGTGGATGCTCAGTATGA-GCTGCTCA-------------GGCTTCCTGCTGAATGGAAAAACACATAGATTCAGACTTTTGCTAGGCAAGCTGGGAGTAGCTCACAACACT-----------------TTCCGATTAGCCAGCGGA---GGGCA---GACTATAAATTGGACAAACAACTGCACGGAAGAAAGGCTAGAGATGAAGAGGCAGCTCATCTCAAGGGGAGGCGTCAGGCAGAGTACAGCA-GGGTCAGAGTGGGACTTGGTCCTGTTGAATACTTTTGTCACATTTCTGAAGGGGGAAGGG---------AAGATGACTCTGCAGATGGCAACCCACCATAGACGAGCTGCAGATGAGGGGGTGATCAGAAAGGGAATTACAAGGTTCCACAGCTAGGAAGGGTGGTTAGAAAA-----------------ACGAGAAAGCCCAGGGGTGGAGACTCCCATGGAGATGGATTCCTTCA
s HiC_scaffold_1 112172207 2871 - 233722169 CCCAAAAGGTggtctctttccctttcccaaaTATATAGTGACC-----ATCATAACTCCTTAGCAATCTCCACCGATGAAGTTCTTCCCTTTCTTATCTTTCTTGTCACAGAAATGATAGCATCAGAGTTGATTCAAAGGGTGGGCACAAT----TCATTTAGCACATTTTCCAAAAAATGA---------------TATGTGTGTGATGGCAACACATCTATCATCATgactgatttaaaatataaattttacgatacagataaaagaaaattaattatttgatgataaattaatttttcctttt--ttggagtaTTTAATAGCTCCAACTTAAATTTAGTGCAATCATACCCAGGAATCATACCCA-------------GGAAACcattatgaaatataaaacaaacc--ctTGGGGGTAT------ACA--------CTGGGAT--TCTAGGAGTCATCTCTAGGAGAC---AGTGAACTGCCCCAGGGAGTTATTCTGAACTGACTGG---CCAGCAGCATTTCTGAGCACAAGTCACTGAGCCTGAAGGACAGAAAGCAACCGGTTTTCTTGTCCATCCCTGTGAATGACAGCATTTTCATGGGCTCTCGTtagaaaacaaga-----caaggatctTCTCTTGCTCCTTTGTACTGGTAGTGTTAAATTACCTGTTTCTTGAATTTCATGTAAAGGAAATTAG---------------------TCTTCT--------------------GCCTACACAGGTGAGTTACTCAGCATATTTCACTACAGTCAAATTgctt---ttttacttccctttcatattttccatttttcgaTCTAGACTTACAAGTGCAGTcgttgaaaaaacaaaacaaaa-----ctaagcctTTGAGCCTAATGTa----------ttctttaaataattattt------aaaaatggaaact-acATTGGCCCGACTTCCTTTGTCTGAATAAAAGCTTAAGCGCAGTATAAAAGGGTTACATGTGCTGAAATGCTGCCCAAGGATATGTGTTATTATTCCTCCCCCCTTGGCCAGCAGGgtctcccttctctttccctttcagtcTTTTGTTTGAACAGATGGGGTAGGGGAAGC-AGGGAAAGATAGCCATTCTGTTCTCATTAACTCTCCCTATACACAAACACAACCTGGGCT--GGGGACTTGAAGCAG-GACAGCTCCCACTCCACTTCCATTGAGACCTGATGTGCTGAGATACAAAGAAAGCAAAGCTCAGGGCCCGCATCACCATATCAATGAGGCCAGACCGCTAACTAGCAAAATTACATTtggatatagtttta-aaatacattc-------gcaaaaatatgtatgtaataAGTAACAC--------------------CAGAAAACAG-----TGCAGGTATAGGAAATAAATCAGCTCT-----ATGCACTGTATTCAAATTACAT---TTTTAGGAATTCCTTCATTATATATAGTAATATTTTAAGAGTACAAATGTATATTTGTGGTGAAACATGAAGGTATcctttctact-tttatttatctttttttctataaGACAG-TTTAGAAGAT----GTTGAGAACAGTGGAGTTCCTATTATTTCAAGCTCTTTTGTTTGGTTGTAAT---AGGAAAATTATGATTAGGTGTCTA-GTGTGAATGAT----CTTATTTGATATACAGCATTCTTGACCAagaaaa-agtcacagaaaattaaaaatatacatcatATATTGAAGTT-TTCTCTTTACAGTCCTTCTGAAAGTATAGGGTTTTTTGGATATTTTAGGAGAAAGGAAGATATATTC--AGAATGAGATGGGGGTTCTCCCCCTCGGTGAGTTTATCTGGAGGAAAAAACAGCCCTTTGACTGACAAGGCTCCCTTTCATGCAGGCTGTGGATTGGATGTGTCCTATTTGTTAGATTATATTGCTTTTCCATCTCTGTCCATCCTCATTAGTATGATGAGGGTACTGAGACAAATATAAACA-----------------gtgtaaaaaaaagtaaataaaag------------------------------------------------------gtcT-----------TGGCTAGGTGCACCTCAACTTTTG-GTAT---CATGAACTTCTGTAT-CAGGAgggcaagagagaaaaaacaatcaaTTCCGGAAGCA-GAAGGCGCTCCTATTTCACAGCACAACTCAACATTGATTCAGAATGTGGTCCGTAAGGAGCAAGGTGCTCCTTGTACTCCTCAAGGCTTTCAGAAGACTGGAAGATCC-----TCAG-------------------TAGCAACAAAGGGGTCAGTCTGGCCT--------CTCTTTGT-----GATCTCTaagtctgggggggggggcagtgctTATGTCAAAGAAGAAAGCATTTCTGAAGGATAAACAGTCCTCTGTATCTCTATGGGACATGTCTTGGAGTTCACTG-TAATACACACTTTAGGTTACTTTATTTATATGTGAACAACTGAGCCATAAAATGTCCAAGTTTGTCCCAGCAATCTAAAAAGAGAGACTGactaaaatatttactctttgtTAGTGATTATTAACTCTAGTGATTATTAACTCATGAAACACACTATTTCAAAGACCTTGTTGAAAACGAA--------CTATCCAGGTGACCTCAGATGAAACAGATAC---ATATGGTACTATTCACTTTTTATTCCACTGCTTTCTGATGAAGAGAAAAGgatataaatttgcattttcac-GGAAAAGCTTGG-GTAGatctcaacatttttattttcaggatgAGTTCAGATTGACTAGCAAGAACAGGCAGATGATTATAAATTGGACAAACAACTACAAGGAAAAAAAGCCTGTGAT-AAAAGGCAGCTTGTCCCGAGGGTGGCTGCCA-GCAGGGTGCAGCAGGGGTCAGAACTGGGCTTAGtcctgtttaatatttttattaccaaTCTGAAGGGGGAGGGGAACTGCATAAAAATGAATCTGCAGATGGCTATTCATTATGGAGGATTTGTGGACCCCAGGAAGAGCCCAGATGAAATCCTAAGGTTT----GCTTGGAAAGGTAGtctggaaagaacaaagaatttGCAGGCTAGAAAGCTCAGATGCAGTGAACCC-----AGGGTGACTCCTCCA

a score=27895
s chr3           102062322 1182 + 160039680 GTTCTAGCTAGATTTGTTAAACTCCTGAA--------------------------CAGAGGAGGAGACAGCCTGAGGAAATCCAAGGATCCCCTTAAGGAAAGGGTAGACCTGAGGTCTG----GAGACAGGATCGGGTCAGTGCACCCCGCC-CCCTGTTGGAGAGAGGAAGAACTGCAAGC--GGCTTTGGGCTGGAAT-CTGGAGGCCTAAGTGAATTAATTGAATGGCAGCTAG-----CCCA----GCCCTGGAGAGGTG-CTGGAAGGAGTGGAGTTCGCCCTGGACCTCTCCTCTGCCTCCCGCGCAGCAGTC-CACATCTGTCCTGGGACAGGCACACAGACTGTGTAATCAGGCTCAGCTGGTAATCAGGGAAGTGCCGAACAGACGCTAGACGAAATTATCTCCCTGTCCCAGACAAAGTGGCCTTGCAGATGAGGGTTAAAACCAGACATGGTAGAAAAAACAAAGGAAGGAGAGTGGCAGCTGCTAAGGAACACCTGGCCGGTGGCCGGCTCCCAACTGTCTGCATTCACCCACAGAGCCTCCGAAGCCAGGGTGGGTTACCAAGGGAAGGGGGACTTCAGACCAGTGGCGTTTGGTGCCAGAATCATTGTTACAGGAGGAATA-GCCTAGACCCACAGTTGCAAGAGAGGAGAGCAGAATCAGTTT-------------------CCGGCAAATGGCCAGCTGTGTAAATGAGCATGGAAACGTGCTCCCATTTC-----------ACTGAGGGGACTGTGCTCCCACTTTCAACGTGCAGAT----GGTAT--------TAGCTTTCCCCCACC--CTCTTCCCAGGATAAGAGTCCATTTCTATTCCTGTACTTGTGACATTGGGGTCTTCAGAAGGGACTTTGCAAGTGTTACTTGAAGCTTCCGAGTTCACAGGCTGTGGCA--GAGGGGGTTTAGGGGGAAATAATCTTAGGAACTATAGAGATTGTGTGGAAGACGGAGAGCTCTAATACTTCGAGGGAGAC--ATGCCTGGCCCATTCCGTAAGGGctctgtgtcaggcacagtgctgggcacatggtgttgagccaaagtgagct--gagcaagtttttgtcctcacaaagcttcctgtcattgggtactgggcgtggcgggagcaaatgctc-----acacaatgtaaaactgcacc----tgttcagtattaggaag---aagggatgggagtgtctc-tggagtagacttgatcctgctagggaaggccacagagaaggtggcaagtgtgctgaagg
s HiC_scaffold_1 112176669 1241 - 233722169 GTTTTAATTAAGCTTGTTAAATTCTTGAATTGAAGTTGATCTTTTCAGAGAtagtcaaaaacagaaaaaactctAATAAATCCAAGAATCACT---ATGAAAGAGCAAAGCTGAGATCTGAAGAGAGACAGCAT--GATTTATTCACTAGGCTTCCCTGCTGGAAAGTAGTA----TTCAAGCTGAGTTTGAGGCTGGGTTGCTGGTGGCTTGGTTGCTGTGG--GAACTGCAG-TAGAGATTTCCACAAGGAACTGAAAGGGAGTCTCTAAGAGGCAGAGGCACAGTTGGAGCAGCTC-----ctgcagcacagcagcagcacaTCTGTCCTGGGACAGGCACACAGACTGTGTAATCAGGCTCAGCTGGCAATCAGGGAGCTGCCAAACAGATGCGAGACTAAATTATCTCCCTGTCCCAGACAAGGTGGCCTCCTAGATGAGGGTTAAAACCAGTGCTGGttggaaaaacaaaggaagagaagCGGCATCTGCTACCAACCACCCGGTCAGTGGACGGCTCCCAAGATTCCCTATTCACTCACAGA-CCTCTACAGTCAGGGCTGCCTTACAAAGCAA--GAGATTTCAGACCAATGGCATTTGGTGCCAAAGTCATCCTTAGAAGAGGAAAACGATTTATGCCACA-TGACAACAAAAAGGAGCTGAACCAACTTCTTGTCAACAGCTCTAGTACCTGCCAACAGCCAGCTGAGTAAACAAGGGTGAGaatgtgcctcagtctccctctctGTTAATTGAGGGAGATCAGCCCTTACATCCAAAATGCAAATACGAGGTATTTTAGAGATAAGTTTCAAATATAAGATATTTTATAGGTCAGACTTCATTTCTATTTCTGCACTCATGACCTTGGAGTCTCCAGAAGAAACTTTGCCATTGTGGTCAGAA-CTTAAGACTTCATGAGCTGGGGAATGGAAAGGGCTAGAGAGGCAAGAAGCTCCAGGAC-------ATGAAATGATGGAAAGGGGTAACTGAGGCATGGAGAGAGACTGAAGCCTCGTCCATC---TGACAGATGTCTGTTA-----AGGACTAGCTGTATGTT------CCAGAATGAACTTGAAGCATATTATTGCTTTCATGGAGCGTGCAGTCTTCCAGAAAAACAC---ACTTGGACAAATATTCCTGTGACCAAATGTGAAACTGTACCTCTATGTGCTGCA--AAGAAGCCAAAGTTATGGGAGTGACTAGTGGAG--GACCTGATTTGGTTTGGGAACACTAGTGAGAATATAGCTACTGAGTTAAGAG

a score=8438
s chr3           102068041 168 + 160039680 CTGGGAGCTT--CTGCCTGGAACATGGCACCTAGCCTGGTGACAAGATGCCAAGTGCCAAAACCATCAGAGGAAGAGATGACTCTTTCGATACCTTTTTCAGTTAGATGAGTGCTGG-CTACATGTGCCCAGGGCAGTGTTCACAGGTCAGAAACTCACAGTCATTGGTGA
s HiC_scaffold_1 232945840 171 - 233722169 CTGGGAGCTCTACTGCCTGGAACATGGGATCCAACCTGATGGGCAGATGCCCAGTGACAAGACCATCGGTGGAGGAGATGACTCCTTCACAACCTTCTTCTGTGAAACTGGTGCTGGAAAACATGTGCCCCGGGCAGTTTTTGTGGATCTGGAACCCACTGTAATTGGTAA

a score=4300
s chr3           102068204 107 + 160039680 GGTGAAGTTCACACTGGTACCTGTTTCCAGCTCTCCCACCCTGAACACCTCAGCACAGGCAAGGAAGATGTTGCCAATAATTA--CCCGTTGGCTCCTACACCATTGGC
s HiC_scaffold_1 232946307 108 - 233722169 GATGAGATCCGAAATGGGCCATATCGACAGCTCTTCCACCCAGAGCAGCTCATCACTGGGAAAGAAGATGCTGCGAACAACTATGCCCG-GGGCCACTACACCATTGGC

a score=38821
s chr3           102068857 1940 + 160039680 TTTCTTTCCTATTTTAGACCTGCTTTTCATTGTTCCTTCTTGTGTTTT-----GCTGTTCTCCAGCAATGTC-AATCTGCCTTTATTTCCAGGTATTTTATTTGTTGTGTTTAGAAGTCCATTTTGCCTTGCTAGTGAGGACACATTACTCGCCACGTCGACACTTAATTTGAGCCACTCCAATAGCACCTCCGCCAACCCCCCTTCTTAGTTAAGACGATCATCAGTGTTTACAGACATTGCCGTGCGTAACAAGGTCAATGCATTTCTTGAAATGAATTCAGCCAAGACTGGGATATTTTCAATGTGTAGACACGGGTCACCCAGCTt---agttctgtcaccttaggaaaatcatttaacttc--tgagtttatagactcccatctagaaatggttgtgtaagaataagattagctagctgggtAGGAATTTGCTGAATTCACAAACAGGTGGAGGAGGTATGTGGGATCTACTGTCTCTTCTCCAATctctccaacctcaccgctgtggaagctggctttagttgtgagtcagagggaagaTTAGCAGTCCCTTTGCCCTCAGAAGGAG-GGCTGAGGAATGTTTCTGGATACCGTGAACACTGGCCACACATTGCAAGATACAGTGGCTATTCTTGGAACCTTGCTGAGATGATGAAGTGGGGATATTAAGAGCCCACAGGTGTCAGAGGCCATGTCCCATGTCCCAGAACACCAGAAAGGCTTGCCTCACGCCTCACTGGATTATGTGCCCACACGTCCCTATGTAGATGGAAACTAAATCT-CAGAACAACCTCTCCAAGAAGCTTGATCACCTTCGCTCCATCAGCCTGGTTGTCTTCCCTAACTCTGAGACAGTGTTGAGGGTTTGCTAGCACGGGAAAGCAGAAATAGGAGTCAAGGACCACGTTAGAATATAACTCAGGAAAGATGAATGGAGTAGGCATACCCCCAGATACTTCTCTGGGAACAACTAAGGACAG--TGTTCTCCCCAGTCTATACTTAACCCACAGTCTGTCAGACAAGAAGACAGAGCTATAAAGAGCAACTGACTACACAACTGGGG-TAGAGATGCAGGTTCTTGC-----ACAAGAGTGAAG-TGTGCCGCTTATCCAGGCAGTGTTGTGAGCAGCAGTGAGAGTCCTGCTACTCAAGT-------ATTTACCAGAACCCAGAGTAGTGTCCACAGAGAGCGAACCTCAGTGGGCAGGCCGTGAGCTGCTTCTGTCTTGCCTGGGA-----TGTCTCCAG------tgacactttcggactggatgatttcttcctg---------tgtcctat-------aaaacatttacggcaccccctagattgacccact------ccagtagcacctccaccaacttccctccagagttaagacaatcaaccctgtttacagacattgccaaaggcctccaagggaagcacgggcaaaattgttcttgaatgagaggcaccgATGGAGCCTTCTGGTTTTAAATCCAA-------AAGTGGTAACATTTGTAA---TGATTCCCAGGGCTGGAGCTTGGTGTGAAATGCAGAGATATCTCCAGTAAAATAACAAATTAATAATAGTAGTAGTAGTAATAACATGTATAGCTAACACGTACACTAATTTGTTTATGTCTGTGAAGCCACAAGGCATTATTTATATGTG----CCCACCCCACACACTTAGCAGAGGCATACGGT---GTGGCTCATcacacatgctt--gagtcagagtcccagctgctgaggtcccagctccatctgttactgtgcgtgatgtcggacaaagaaatcctgtctctgcacctcacagtcttggtccataa--tgtagatgatggcagtggccacctcaCTGTGCATCTGTCACGCAGGCATCCCATTCATACATGGATATAGAGGGCTCAGCACCACCCT-------GGATGACGTCTCCGAAATATCTCATTAGAGTTAAGAAATAGTACCATCA-TCA--TATGAAGTT--GGCTTTTGTGTTTTAGGAGT
s HiC_scaffold_1 112187584 1823 - 233722169 ttttttgtctattttagatCA---TTTAATTGCTGTTTCCGCTGGTTCACTGGGCTGTTCTTCTTCAATGTCTAATCTACTTTTAATtccaactattttatttttcatgttagaAGTTCCACTTTGGCTTGTTTGTTATGCAA-----------ACGT--ATAGATAATTTGA----------------CTTCCCCA-----------------------------------------------GTACTTAACATTGTCAAGGAATTTCTTGGAAATAAC-CGGCAAAGGATAGGGAATTTGAAATATATAGACACAGATCATCTAACTTGTTAGTTGTGTCAGCC-AGAAGAGTCACTTACCTTCCCTGAGTTTAAGTGTTCTCATCTATAAA-AGTGAAGTGACAGTCAGACTAACTGAATGTGTAGGAATGTCTTGGCACAGCAAACAGGTGGAGAAGGATTTAAGGCTAGGAGGCCCCTCTCCCGAGTCTTGAGACCTCATCACATTGGAAGCTGACTTTAGTTATGAGTCAGAGGAAGGATTAGCTGTCCCTTTGCCTCGGAAAGTAGCAGCGAAAGGGTGTTTCTGGATATTATAAACCCGGACTACACATTGTGAGATACAGTGGCCATTCCTGTATCATTGCAG---------------------------TCTGAGGTCTCAGAGGCCAC------TGCACCA--ACACCAAAAGGACCCACCTCATGCTTTCCTGTGTCACATGTCCGTAT-TCTCTGAGCATTTGAGAACACTGCCCACAGGAGAGCGTCTCACAGAAGCCTCAGGGAATTTTGACAGTGAA-----TGGTTTCTACTAACT-------------GAGATTCAGCAAATA-GGACAGCCAGAAATAGAAACCAGAGGTCTAG--AAAGGATAACtcaataaagataaaagaatcGGGCA-AGTTTTAAATACTTGTCTTAGAATAGCTAAGGATAGAGTGCTCCTCCCAGTCTAAACTTATCCCATAACTTGTGAAGCAAAGAGACAGAGCTATTAAGAGCAACAGACTCCATGACTGGGGATAGAGACACAAGCTCCTGTACCAAACAAGAAAGAAGACGTGTCATGTATTCTTCAGGTTTTGAGCTTAAGATTGGAATTGCCACGACTCAAGTCACAGGAGTTCACCAAAACCCTGGACGGTGTCT---GAGAG-GAGTCTCAGTGAGCACAACATGAGCTGTTTCAGGTTAGTCCAGAAGTTTTTACCCTCAGCATAACTGACATCTTCGTTTTGAATAATTCCTTCTTGTTTGGAAGCTGTCTTGTATATTGCAGAATGTTTAGTGAATTGCTGTTCCTGATCCCCTAGGCACCAAGTAAAACC-CAATCAAC--CCCTCCTGAGTGATGAGCAACAAAAATGTTACCAAGTTTAGCTA------------GGAA-----GGTAAGATTATCCCTGACTGAGATCCACTGATCTAGTCATCT--TCTTAAGCCTTAGCATTCTAAGTGATAGTATTTATAAGAGTCTTTCCCAAGACTAAATTTTGGTATGAAACATAGAG--ACCCATGGTAAAAT----------------------------------------CCAACACTTGGATTGGTTTATTTATAGCTTTGAAGCCAAGAGTCATTATTCACATAAGAACTTTCCCCCTGAGTACTTCACAGAGGCATGCAACACAGTGGTTAATTACACACACTCTGAAGCCAGCATCTCAGCTGCTCAAATCCCAGTTTTATCCCTTATTAAATGTGGCATGGGGGAAGGAAAGTCTGCCTCTGCTGCCCAGCTCCTTTATCTATAAACTGTGGATGACGACAGCGACTGCCTCACCGGGCATCTGTGAAG-ATGCA---CGCTCCTGGTTGCTTGTGGAGTGCTCAGCACAGCACTTGGCACGGGGTGAGTGCTGTGATCTATCCCAGCACCTCAAATTACTGATACCAGCACTCAGCTGTGCAGTTCAGTCGACTGTGTTCTGAGGGT

a score=60873
s chr3           102074533 1253 + 160039680 TGACACCCGGACAAAAAATTCTAAAAGTAAAGAAGCAGCAGAGTGGACATTCGAACATGTAGCTGGGGCATACCAGATGTTTGTCATCTGATGCTAGAAAGTGGGACATCTGTGACAAACACAGCAAAGAAGGATTAAATGGCAGTGGAGGAGGAGGAGGTGGAAGTCACTTTGACAGTCCGTCTGAGGTTGGCTTCACATTCCAGAGCCCAGATGATGTCTTCAGGGAAATTTTGGGTGGAAGGGACCCATTTTCATTTGAGTACTTTGAAGATCCACTCAC---TTTTTTTGGAAACCGCAGAGGTCCCCGAGGAAGTAGAAGCCGAGGTGCCG---------------------------CTCCCTCGTTTGGAGGTGAGTTTCCTGCTTTTGATACAGGCTTCACTCCATTCAGGTCTCTAGGTCTTGGGGCTCTCACTTCCTTCTCTTCAGCATCATTTGGCAACAGTGGAATGGGCAACTTCAAATCAATATCAACTTCAACTAAGATAGTTAGCA----AAAAATCACGATGAAGAGAATTGTGGAGAACCGTTAAGAAAGAGTAGAAGTTGAAGA---CAGACTGTTAAAGTCCTTGGCGATAAATGGTAAGGAGCACCTGCTACGCTTGGATAACAAGCAATTCAACGCACACATTTAACAGAAATGGTAAACCTTAGCAAGCACCATTTGAG----GAACAAGAACTTTTTTTCTTTTGAAGATTTCAAACGAACTCGACTTTCTGTA----TAACTGTACCAAATCCAAAGGATTTACAAAACAGCTCATGAGAGCCCCTATTTGTCATAGACGTTTGAGTTTGTTGTTGGGACCACAAAATAGGACT-TTTTTTTTCTTTAAAATCGTTGTAATGTCTGTATGCACCTTGC-TTTAAGCCACACATAA--CTGAGGTGAGCCCTGTGACTCTGGAGTAGTGCCAGGGCGACACTGT-CTTTAACCCCAGTGTGGATTTG-CTTCCATTGTG-GTGAAGTGTGGGTGAGTAGTGTCAGCCTGCGGTGACATTAATACTGCCA-GATGAATCTTCTTCAGAAAT-ATTTCAATTTTATTTTCAGCATTTAGTGATGAAAGCCATTA---CTCCATGAA--------------TGGTTTAGTGTATA-GTAAGCATGCTTTCTAGCTGTGCATGAATGATGGCAACTTCGTCAG--TCTGACTGTTGTTTAAA-ATGTAATGGTAAATTTGGATTTTAAAAAGCTGGTAATTTGGGCTTTTGTCATTTGCTTTTTAAAAAAAAAAAGAAAGAAAATACACTTAAGTGTGTTTGGCACaa
s HiC_scaffold_1 105727609 1289 - 233722169 TGGCACCCAGATAAAAA-TCCTGAGAATAAAGAAGAAGCAGAGCAAAAATTCAAACAAGTGGCTGAGGCATATGAGGTGTT----ATCAGATGCTAAAAAATGGGACATCTATGACAAATACAGCAAAGAAGGCTTAAATGGTGGTGGAGGAGG------TGGAAGTCATTTTGATAGTCCATTTGAGTTT-----------CCGGAACCCAGACGATGTCTTCAGGGAATTTTTTGGTGGAAGGGAGTCATTTTCATTCGACTTCTTTGAAGACCCATTTGAAGACATTTTTGGGAACCGAAGGGGTCCCCGAGAGAG---AAACCGTGGCACAGGCTCTTTTTTCTCCGCCTTCAGTGGGTTTCCATCCTTTGGAGGTGGATTTTCTGCATTTGATACAGGATTCACTTCGTTCGGGTCCCTGGGCCATGGGGGCCTCACTTCATTTTCGTCCACCTCATTTGGCGGCAGTGGCATGGGCAACTTCAAGTCTATATCAACTTCTACCAA-ATCGTGAACGGTAGAAAGATCACCACAAAGAGAATTGTCGAGAATGGTCAAGAAAGAGTAGAAGTTGAAGAAGATGGACAGTTAAAGTCCTTAACAATAAATGGTAAGGAGCAGCTGCTACGCTTGGATAACAAGTAATTCAATGCACAAATTTAACAGAAATGCTAAACTATAACAAGCACCATTTGAGaattaaacagaaacattt----ttttgaaCATTTCAGACGAACTCAACTTTCAGTATAACTAACTGTACCTAATCTAAAGTATTTATAAAG-AGCTCTTCGGAGCCCCTCTTTGTCATAGACTTTTGAGTTGATTGTTGGGAACACACAATAGGaccattttttgtctttaaaattgttgTAATCTCTGTAtgcactttgcttttttattaaacGTGATCCAAGGGTAAGCC---TGACTCTTGAGTAGCACTAGGAGGAGACTATACTCTAACACCAGCATGGATCTGTTTTCCATTGTGTGTGAAATGT--ATGCTTTGTGTCCGCCTGCTGTAAAGCTAACATGGCCAGGATGAGTCCTCCAcagaaataatttccattt--tcttcagtatttagTAATGACAGATATTAATGCAGCATTAATGGTAATACATTTCTGGTTCAATACGAATTTAAGGATGTTTTCTAGTTGTGCATGGATGCTGGCAACTTAGTAAAGTTTTGACAATTGTTTAAATGTGTAATGTTAAGCTTAGGTTTATAAAAACTGGTAAACTGGGTCTTTGtcatttgc-ttaaaaaaaaaaaaaaaaagaaaagaaatgtgaatgtgtttggtgcaa

a score=9633
s chr3           102079279 2815 + 160039680 aagaaaGAGAGCAACTTTTCTCTTCCATTCCTGAGGG-GAGACGTAGAGAG--TGTGTATTACTATACATAAGAAAAGTCTTAAAGTCAAG------------CTGATGAGGCAAT------------AAGGTGGGAAGTATCTAGCCCAGAGAAACATGTATCTTACCTCCATCAGGAATGGAGAAAAGGATGATCATGAATGAACAAGAGCCTGCTCAGCTACTCTGTGCTTGATTAAACTG-GCCTCTTGTGCTTGGAGCAGGCA-GTGGGGCTGGGTAAAGATCCCTT---TTTTCTTAC---AAACAGCTGAGCCTTGGATATGCCACCCCTCCTCACTGGAGGAGCAGGGCTTCACTGTCCTGCCCTCtgcat-ctgttccccatgacaactgcaacacatgcccacatacgtaatgattaagacagcacacatacataatcttacagttacattactaaaagtccaaaatggctcgccag-----gG------TGGCA--------TTCCTCCTGGAGACTGGAAGAGCCTTAGAGAGGTCTCAGTCCTGTGGTCCTTCACCATCCCAActctggccctgtccctcacatctctctgtcataaaaacccctcctggggacatggg--ccaccagggatctccaggctgggtttgatctccttatctcaa---cactaactggaccatacctgcaaagtctctttggccctggaagaaacagttctcgggtctgagtactgaaaccttggtgtctcgtgggaggGAGCCC---CACTGAACT----------CCCTAGATCTGGACATGTCCACATCACCTCTG----ACACCGT-----TTTGTCCTCTCTGCTGCCC-CTCTGACTCCATGACAAACTAACACTA-------ATCTTTCCACTCCTTGTCTACAGcttcttcttcttcttcttttttttttttttttt-----ttttttttttttgagatagggtttctctgtatagccctggctatcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctgcctctgcctcccgagtgctgggattaaaggcgtgagcc---accacgcccgg-----ctTGTCTACAGCTTCTTAAGAACTAAGTTTGTTCCTTCTGTTCTTCTGACCTCCCTCTCTCTGTCCCTCCTTCCGCTCTCCTTCCTCCTTTGCTTTGCTTCTTATTTTTCCTATTAAAGCCCCTGTTTTCTCTTTTTCTCCTGCCTTGTAAATTCTATGTTGTTTGAACTACTCCCTCTTT-----------AGGAGACCAGGCAGGCTGCTCTCCTTATGCAGACCATTCAGAAGCCATCACAAGCCAGATAGAGACAGTAGAGCCTGCtcctagtgtctgagcctcac-agctgcatggcaacaggtgattaactgaacttactcagcctcagtttcttcacctgtgaaatggaagacttgatactca-gttcaatgtatttgaaataaaacagtgtagaaatgtaatgagcccagtggctgccccacagcaagcactgaaAG-CATTATCCTCGTGgctggattggtttatatcaacttggcagaagctatactcatctgagaagagggaacctcagttgagaaaatgcctacagaatatcaggctgtaagcaaatatttagggcattttcttagttcc----------ttatgtgggatcccccatccgacctgcaacctattgtgggt--ggtgccatttctggcctgttagtccagggttctataagaagcctggctgagcaagccgtgaggagcaagcaagtaagcagcacccctccatggcctctgcatcagctccccctctcggttcctgtcctgtttgagtttctgccctgactgacatcagtgatgaactacactaaggaagaataactgatataaacacttt---cctctctaaactgcttttggtcttgatgtttcatcagagccataactctaaGTGTAACAGCGTCTTCCTCCTTCCTGAACTCTCAACGAAGAGagtttatttggttgagtataaaaagccagagtcatggatcaatctccatgtgggcagccagttgtagctttgTAGCAATTCTAGGCTTGTGTGAGGGACACAAGACCTCAGAGAAAGATGGTG--gaggacagggataagagttcctcagctgggttcaaa-tctgggctctgccagtactagctacacggcctcaaaaatatactaaatctctctgtccctcagcttgcccatctgttaactgggaggagtaaaatgaccagcttcatagagatgctaaaaggaatacatttgcagtgcttttgaacaggccaggcacaaagtaactccacaatgctacttaatatATTGTTACCGAGCTCTGCTCTGGAACCA-----TGCTCATGAATGCTGGTAACAGATGGTTCCCTGATCC-AGTAACCTCAGGCCTATCTAAGAGGCTAGGAACCCCGGTGGGAGGGATGTTTCCAAGGAGAAGTGCCGCGTATCAGGAAGCGAATGGGAGGCCCAGTCTAGACCAACACCCTCCCCAAGGAAGTAACATTTGTTAAAAGCTGCATTGGGATCATGCTAGTGGAGCCTTAGGGCTTGTTGTCAGACTAACGTGGCTCTCTCTGTATTTGATTCCATTCGGAAGTTTCCAGATGCTGGGGAGGTCGAAAGGCTGCTAAGGGGCACCTGACATTCAGCGCTCTGAGGAAACATAGCCTCCGGGCAGCTACCAC------------ACCTGTGCTGGGTAAGCCATGCT-----GTGTGGGGATCTG------------CAGCTCTCCCCTAGGACAGCAGCTACCACAGCAAAGCCAGGGCAGGACAGGGGGTTCAAAGGCTTACACAGAGAAAGATGCCATATTCGGCTT-GTCCACTGGGTGGAGTATTTTAGTCAAAGAAGAGTGCTGTGGAGGCAGTCA
s HiC_scaffold_1 112196046 2464 - 233722169 AAGAatga---taatttctttctttaagtctTAAGGGAGCAACCTTGAGAGACTGAGTATTaccatagaagaaaaaa-----aaagtccagagGGCCCGGCTGCTGACCAGCTGGTCTCCCACTTGGGGTGGCGGGAGGAGCCTGGCCTGGACATCCCC---TCTTGGCTCCCT---GAGAGGGGCCAAGG--GACCGCAAGTGTGAAAGGGCCTGGTCTCCTGCACTGTGCAGGGTTTACCTCCATGTCTCATCCACAGAGTGGGAACATGGGGCTGGAGGCAGACGCTGAGGATTTTCACAGGTGAAACAGCAGAGCCATGGAAAGGCAGGTTTTTTTCCTTGCAGGAGTCAG--TTCACTGTCTTAGCCCCTGCCTATTGTTT-----------TGTAACCAATTCCCACAT--TTAGCGATTAAAGCAACACACATATAGGACTGTACAGTTAAGACAATTAA-GTTGAAAATAGGTGGGCAGTCCTAGGCCATCCTTGCACTGCCCTTTTCTTCTTAGAGGCTGGGCTCATTTTTGG------CCATCCCTGATTCCATTCTCGCATCCTTCTTTCACGCTGCCCCTCCCAGAT----GTCTTAAGTACCCTG--TGATTACCTTGGGCCCACTAGGATAACCCACGCTA------ATCTCCCCGTCTCCAGATCCCTAATTTACTTCCACCTGTGAGGTCTCTCT--CCAT---ATAGAGATTTATAGATTTTGAGGATTCACAGCT--GCAGCTC-TGGGAGAGAGCCTGAGCATTGCTCTGCAGGCCAGGCCCTCCACTTGGACACTTTGTCCTTGCCTCTGCACTAAAGCGtctcagttttttttaattgcagCACGATCGCATTACATAATGAATACACATTATGGGGAGAT------GGCACATGTGTGCAACATATCGTAATTCTTTTTGCATCCTTTCCTCTCCCCCATCATTTTCCCTCCAACTCGGCTCTTTTTC-----------CTGTTCTGCAATCC---------------------------TCaagaa-------gtctttctttttttctttagttccagGAT-----GAGCTAACCTTAATCATTTCCATTTGTTCTGGTCTATCATTTGTTTGGAgctaaatttctaatttttg--catcttccttccctctctttttctccctt--------cttttttccctctcttcctctctaattttcc--atgaaaataactggtttcctttgttttcttgtcCTGTAACTTCCATGTAacctaagtttttcttttctttttttcttggaaggAGACAAGGCAGGCTGA---------------CATTTGGGC-TCATAACATGCCAGACACACCCAG----GTCTAAATTTGATCACTAATACTTGCCAACTGTATGACTTGGGTGAATTATTTGATCCTACAGAagctcagtttccttatctgtaaaatggaaagaataagaCCCCCATTTGATGAAATTGAGATGAAATGATGGAGACT--------GCATGGTGGTGGATTCAGAGTAAGtactaaaaatcattatt----------------tttctctccctttggGAGACAC-----------------AGAAAACCCCAG----------------AAGTTATCTAGTTCTGGCTGAAAAGCCAAGACCACTCCCCAGAAGCAACGGCAGTGCTAGGCAGCCTGCCCTGTTCTGCCTTATTCCCCAGGTTGCTCAAGTGACATCAACTCCCTATAGTCTTGGAGCT------GGAGCTTACTCGTG------GTGGGGAGCAGGCACAGATGC---------TCAT--CTGCTGGTTCAAATCCCAATTCTGCTGCTACTACCGTTGGGG-------CCTCACCGACCCCAGG--------------------------------CAACATTCTTAACCTCTCCAAGCCTCGGTTTGCCTGTCCGTTAAATGGGG------ATACTAAAAGTAGCAGCCTC-------------------------AAGGAGTttgttaga---aggaaaaaaaatta---------------------------------------------------tttaaatttg-atgatg------------------atgatgatgatgatgatgatgatgatgattgtacag--gggatcgaactcatgactttgcgcttaccag--acaagtgcttga-------------------gccactgagct--------------------------aaatccttggcatgatttaaattttaaaata-------------tgtttttgaa-atGCCTAGCACAAAGCAAAGttacaaattcatgtaataaatatttcctgAGTATAGCT-GGGGGCCGCAGACTGGTTATGAGGACCGTTCATAAATG--TCCCTCCTCTGAGGATGCGCAGGCTTCACTAAGGGACCAGAAGTCCCCA---GAGAGACGCACGCAGGGTGTAG-----------GGAGATAGGACAGCAGCGGCTGTCTACACTGAGGCCTCGCC--AGGCAGGGACATGTGT------CCCTGCTGGGTCC-------TGGAGGTCAGGGGCTTGCCGT---------GTAGC--------------------------AGCTTCCTGCTGCTGGGGAGGCAGGAAGGCTGC---GAGGCCCCCGAGA----GCGCTAAGAGGAAAAGAGGCT--CGGGC-GCCACCAACAACCCTGGACGACCTGAGCTCCGAAGCCCAAGGTCAGAAGCCCAGGGCTCTGGGCGCCCGCTTACAGGTCTCTTC-----CACCTGCCTGCAGGGCGCAGCACCGG-AGACCGGTgggaacaga-------acaaagaaagatGCCGTGTTCTGTTTTGCCCACTGGGTGGAGTATGTTAGCCAGGGAAGGGCGCGGGGGAGGCAGTCA

a score=10458
s chr3           102083073 673 + 160039680 TCTCCTCATCAAGATATAAATTCATGAATCCAGGTCTACAGTGTGTCTATTCCCTATACCCAAAAG-GAGGCCGATA----GAAGATGTTTCAGAAAAATCTGTGTAATTGACCAGTAAAGAAAACACCCTGGCTTTGAGTCCCAGTTTACCCGTGAGGTGGATTATAGGGAAGATCAACCAGAATCATGTTCCTGGAATCATCTAGCCACCTTTCAAGACAGAACAAGTGGGAAGGGATGAGGTTGG-----GGGACTCTAGGTG--TCCCATTCACAGAGGTAAGAAATAGAGGCTGTTAGAGAGCCACAGGCT---TGTATTACAGTGTGACGGCGAACATTCTCTCTGTATTTGCTTGTTTATTTATCTATTCTTTCTTGCTCAAAATCAAAGGCAACAAAACTGAAAGCGCCTGTCATTCCTTGCA-CACATAACCAACCTCACAGGCTTCAGCAGACTTACACAGACCTATAGTGTGCTACATACCAGTTTGGGCAGCGTTGATGGGGACTGAAAGCTGATGTGAGGCATG-AAGGTTGCTCTAGACGT---GGCTGCAACATCCATGTTTATAAACCCCGTAAGGCTGGTG-----AATGGAACAAGAAGA-GACACCAGGAAAACA----------CGGAGGGAAGGCCGCTACCGTGTAGTGTCAGCCAGAAAAATGTGCTGCTCCCTACAGGGTGGACA
s HiC_scaffold_1 112199142 658 - 233722169 TCTCCTC--TAGGATATAAATTCTTTGGTTTGGGTTTACAAGTTGCCTATCCTCTGTGTCCACAAGAGTGGCTGATACGTAGCAGATGCTTCATAAGAGTTTGTTTAACTGACAAGTAAATGAAAGATCATGGGTTTGGAATCCTATTTGCCTGCAAAATAGATAGTGGTGAAGATCAGATTAAACAATGTATGCCAAATCATCCTGCCACCTGTTAAGAATAAACACA-GGAAAGGGCCAAGGTTAGAGGAAAGGATTCTAGATAGTGCCTACTTATAG----CATGAATGGGAATTGTTAGAAAAATAGGGAGTCAATGTCATATATTGTGAT----AACAACTTCTC-Gtatcaatttattcattttatttaactattttgctaaaaa-aaaaacccacaaaa-------tgccTGTTTTGACTTGGAGCAcaaaaata----cacacttttcagcaGGGTCACATAAAC---TAGGTGGCAACTCACTAAAATGA------------------AACAGCTGATTTTCGGAATGTAGGGCTGACCCAAAGATGTAGGATGC--CTACcttgtttacaaa---aataaaattggtgaGCAAAAgggtaaaggaaaacaaaaacaggagaATAAAGGACAAGCAGAAAATAAGGCCAGTACAG-AAACTGTGAACTATGAAAACCTGCTTCTTCCTAGGAGACAGACA

a score=64549
s chr3           102084645 4131 + 160039680 [encoded data, 4681 characters]
s HiC_scaffold_1 112200269 4235 - 233722169 [encoded data, 4681 characters]

a score=10119
s chr3           102089729 752 + 160039680 TGTTGAGGGAGGACTGGAAGGTAAGAAGAAAC--AATAGACCAATCTACAACTCAGTTGCTA----GGTGATGGTCTCAGACATTTCATGGGCAAATTGATGCTTTAGACGATGAAAGTGAGCATTGTGGATCCCTGGTTAGATATATTCATCCATCCATCCTTAGTGCTCTCAGAAGACACAGTAATCTTAGTGTATCAAAGTGAACATGGGGGTGGAGG-ATGGGTGATGAAGGGCCAATGTTTTCCTTATCACGAACAGCTAGAACCGGTCCATTTGTTTGGGGTGAACAGGGCTCGTTGGGCTGACAAGCAACCTTGGGTTTTGGCACGGAGTT--------GCTTTGTAGCTTCTTAACAGGCTATAT-CTGGGTCCAGAGATT-----------------------TGGGACTGCTCTTCAGTGTC----CCTTCTGAGAGCACACCTGTACTTACTGCTTATGATGGTCACCCTGTA----------AGAAGCTGTG-------TTTG---CCATCAG-ATAGCATCTGC--ATAGCATCTCTCCTAACAGTAAATGGACATTAAATGGT----TTACAACCT-ATATTTTTGGGAAATGGCCTATTGTAGAGCACGAAAAACTATTCCGATGACCAATTTTCCAGCACTACAACAGGTAATGCCTGTCTACTATAGTTTTTATGTGGTGACTCTAGCACAACTT---CCCACAAGACCTCATGGGGAAGTGGGAGTCTGGTTCTATGATTCATGG-GTAAAACGGAATGGCTATGTTAAACGGTGCA--TCCCAGGGTTCTGCAGCTCTTAGATGAGTCTC
s HiC_scaffold_1 112206200 798 - 233722169 TGATTGGGAGGAAGTGGAAGGTAGGGACCTGTTAAATACATCAACCTATAATACATTTATTGTATTGAGGGAAGTCATAAAGATATTTCAGTAAAGTTCATATTTTagaacatgaaaataaatatcGTGAATTCATGAATGAAT-TAATCAAATATTCAAC-------------AGATACACAACAATCTTAGCACAGTTAAATGAACAAGTGAGCAAATATGTAGATGGCAAATGAGCAGCGTACTCCACATTGTGAATAGCTGAAACTGGTTCATTTGTTTAACATGAACCAGGTCCCCTGGACTGGGAGGCAACC-TGGGTCTTGGCACAGATATAGCCATGAACTTTGTGGTTGAATACCAGGTTGAATACCAGGTTGACCGGTTGTTCCTCTAGCTTTTCATCAGGGTGCAGCTAGAGTTCAAAGTCTAAACCCTCTGTGGG-ATACCAGTTTTTTCTGCTTTAGAAGGACTCATTGTAGCTCATACTGAGAAGGTATGGGGATATTTTGCTCCCATCAATGAAACACCTGCCTAGAGTATTTTCCCTAAGCTTTATTGGGTAGTAAATGGCAGGGCCACTTCTTAAGAATTACTGGAAATATTCTATCCT-TAGCAGGAAGAGTTACTGTTATGACTAACTCCTCAGTGCT------GGTTA---CTTTCTAATA----TTTTAGATAAAGATTCTAGAATGATTCTTGCTCATCAGGCACTGTGGAG-TGAAGGAGGGTGGTTCCAGCATCCATGGCAGAATCCAGAGTGAGAATCCTATGTAATGCAAGCCTCTGGCTTCTGCAGCTGTCAGGTTGGTCTC

a score=32457
s chr3           102094373 3803 + 160039680 [encoded data, 4616 characters]
s HiC_scaffold_1 112207422 4112 - 233722169 [encoded data, 4616 characters]

a score=50040
s chr3           102099089 4205 + 160039680 [encoded data, 5011 characters]
s HiC_scaffold_1 112211927 4534 - 233722169 [encoded data, 5011 characters]

a score=49331
s chr3           102109496 5158 + 160039680 [encoded data, 5900 characters]
s HiC_scaffold_1 112219643 4897 - 233722169 [encoded data, 5900 characters]

a score=17895
s chr3           102116779 476 + 160039680 TTCCCTCCAAAGTGCTCTATGTCCCCACTCTTGTTTAAACACCTTTGTCTCTCTGTGTGTGTCTCTCTCGGCATGTG--------ATTTCAGCTCATTGAAGACCCAGTGGAGATCGTGAATAACAAGCTGGAGGTCCAGGCCTTTGAGCGCATCGAGGACCAGACCAAGCTCCTTGGCTTCTTCAAGAATGAGGACTCAGAATGTAAGCTGTCTGTCAACACAGGCCTGTGGGTCTGAAGGCT-GGCTCTTAACAAGGTGTGCTAGGCTGTCCCGACAGAGGCTGAGGCTTTAAGATCTCTTTGGCTGGGGGCAGTAGAAGCTGGATTTCTTCCTGGTGCCTGTACAAAGGGACACATGTGCAGAAAT-CATGCAAAATAGGCAGGGGGAAGGAAAGACCATTACAGTTAGGCCGAGTTTTCTAGCCCCGAAACtgtgcgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgt
s HiC_scaffold_1 112225402 465 - 233722169 TTCCCTCCAGAGAGC-CTACTTCCCAACTAGGGAATATGAAAAGTTGTATTTCT-TGAACATATTTGTGAGCATGTGTGTATGGCATTTCAGTTAATTGAAGACCCAGTGGAGAtaatcaacagcaaactggaggtCCAGGCCTTTGAACGCATTGAGGACCAGATCAAACTCCTTGGCTATTTCAAGAGTGAGGACTCAGAACGTAAGTTGTCTGTTAATCCTGCCTGGCAG--TGGATGGCTGGGTTCCCAAGAAGCACTGTTGGATTATCCCAATAGAAGATGGATCTTCCATATTCCATTTTCTGGGGGGAACAGAGGCtggaattttt-------tctttacaaTGAGGCACATGT--AGAAACACATGCA----GGTCACTGGgctgaaaaa--tgttaaatttggGTCAGGTGCTCAGGCCTCAAAAcggt--gtggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtgt

a score=11581
s chr3           102119610 485 + 160039680 TTCCTACTTGGGGCTCATCTATGTGGAAACTGTGACTTCAGCAGGTACAATTTTAATTCTACGCACTTGGTTGAA-AGGAGGTTTTTTTTGGGGGGG--------GGGTCCAATTTTTTCTTCTTTTTCTTCAATTTCCTATATGTCCTGCTTTCTG--TCCACAAACCTGTGGTGGAAGGAGGCTCTTCTTGGGTCACTGAACACCAGTCAATTTAAACTTC--------AACTATTT-TTTAAATGGTATTAAA----TAGCTGTCTAA---------------------------CACCATT-------------CTCTCC------------------AAGTGAGCAGTTTGCCTCTTGCAAACATTTCTCTCTT--------TTCTCCTAGATTACAAAGCATTCCAAGAGGCAGCTGAACACTTCCAGCCTTACATCAAGTTCTTTGCCACCTTTGACAAGGCGGTAAGTACCCATGAAAACCCCATTTAAACACGTTCGGCAATGAGGACAATCAAGGTTTGAACTCTTCCACT-------------------------ATCCTTCTTAGCCTCTTTGTCAGGAAGTGTTAGA
s HiC_scaffold_1 112230737 593 - 233722169 TTTTTAACTTAGGCTTATTTATACAGCAAACTACACTCTAGAGGTTACATTTATAAG---AAGCAGTAAGTTGAGTAGAAAATCTTCTGTTGTGGAGTTTCACAtgcctttgttttcttccttgttcttttccacttctcttgttttctgctttccaACTTCATAAAAATGTGTTGAACATG----CCTCTTGGATGACTCAGTGCTAATTTATTCAAATTCCTTGGTGGAAACTATGGGTTTAAATAGTACTAAGCAGTTAGCTATCTAAATAATGCCTGTTAAATACTTATTCAATCAGGATTAATTGGCTTTCGACTCTTGCATatcatttaaaaagagaagtcTGTAGTGtacctcttaaaaatatttttttattgtttttcttcctgctaGATTATAAAGCTTTTGAAGAGGCAGCTGAACACTTCCAGCCTTACATCAAGTTTTTTGCCACCTTTGACAAAGGTGTAAGTACCTATGAAATCCCAGTGTAAATACTGTCATTGGCAGAAGGGATTAAAGTCTGAACTTTCTacctctgttcttttcttttaacagCAGTGACCCTCTTTTGCCTCTTTCTCTGGCAGTATTAGA

a score=14748
s chr3           102121836  990 + 160039680 GTTCATCTGAAGGGAAGAAAGGCAAGCGGGCTGGGCAGGTGGGCTTAGCTAATCGCCAGGGCCCTAGTCTTC---TGAGTGACATGCTGTTCCGGGTTCAGGGTAGTATTTGT----AGAACTAGCTTCCAATCTACCCAGAGTGTGATTCCGTGTCTGTGGC-TATGAAGAAGGGGAAGCCAGGGAAT----------TTCCAAAGCTGCTGTACTAAC-------AAGGAAACCAGCATCGTAAGCATGGCTGCGCATGTGGCCTTGTGTGGCT-CACACCTTTTAAAAACAGAAAGGCCATCTCTGCACCTCCCTATAGAACACAGAA---------TGGGGACCAGCCTAATGCCACCTGGGACTCACACCCATCCT-----GCAGAAGGTGGT--------GCCCAGTGGGAGGTGGTGGGATTCAGAAGGCACGGTCGCAGCCTCAACAATGTCCAGCAGGAGGCGAAAGAGCTGAAGACCAGAAAAAGTAATACAACTGGGGAAGTGGAAGACAGTCTTGTT-TGCAACA------AGGACATTT-------------------------------------------------------------GGCCAC-CAGTCAAGGAGAGAAAATCCCCAAATAATTGGAGACGGC----------AAATC---------CAAGCTGaaaaaaaaaaaaa---------------------aaaaaaa-----------------aaaGAC-GTGAA------GCAGACATTAAAAGGCCTGGGAAGAAACCACTGTT-AGGAACAC-------AGTT-TGGGTCCAGGTTTTC-ACACACTGAGAAAACTATTCAAC-ACAGTGGTCTTTCTTTCATGGATTCA---ACGAATTCATCTATTCATTTAGGAAGTATTTATTGAGTGA-------------------CTTCTTGGCTCCCAAAACACAA-CAGTTTCAAGCAAGACATGCAATTGGCCCTGTAAAATTTAGAATTTAATATGAGAGAGAAATTGAAGGAGCAGA------AAATTAGTAAAAA--CCCAAAAATAAATAACAAATCAAGAAGTGAATTATAAAGAGGGCGGGAGGACACGGCTACTGGTGTAGATGTGAAAATCAGTAGTTCCCAACTGAAGTCAGTTGATCTTGGTTCCTCTGATGAACtttt------gttttgttttgttttg
s HiC_scaffold_1 112233299 1186 - 233722169 GCTGGTTTGAAAGGAAGAGAGTGAAAC--------CAAA-GAGTTTGGCCAAGCAACAAAGCCTTAGTTTTCAGATGAGTGGTTTG--ACTCTGAGTTCAGGGTAGTATTTGTTCTCAGAAGTGCCTTAAAATTCAACTGGA---TGGTTTCATGTCTGCGGCCTGTGAAAAAGGTGAGGTCAGGCTATAATTAAAACCTTTGGAAGCTGCTTTACGAAACACTCTGAAAGACACT-GAGTCATAAGAACCACCGTTCATTTAGCCTTGTGGGAtttcatgacatttaaaaaaagcgCTGCACTCTCTCTAACTTCATATGGATCATGAAGGCTGCTGCTCTCGGAGCAGTCAGGTGCcagctgggacttgaactcacccTAGTGTGTGGGAAGGGGTTGTCCAATGCCCAGCAGGAGAAAGTGAGGTCCAGAAGGCGTTCCTGCAGCTTCAATATTATCCAGCAGATGGCGCTAGAGCAGAAAGACAGAGTAATGAAAATCATCAGGTGGCTGAAAG---GACCTGTTGTGCAACACACCCTAGGGAACCTCCAAGGGACCCAGAGGTGGCTGGTGGAGGttggaaagaggagaaggaaaggctAAGGAAGCAACCACACAGTGACAGAGATGAAAACACCAAATGGTAGAAGTTGGTGTCACAGGAGGAGTCGGTCATTGATAAGATGGAGAAAAATAAGACCCCCAAATAAGATTAAGATTGAAAAAATTCTGATTCAAGACAGCAAAGACTGAGAAGCTGCTGCAAACATTAAGAAATCTAGGAAGCGGAGACTATTGAAGAATACCAGAGGGAGTTATGAATACTTCTTTTctacaaattaagaaaac-attcAACTAAAGCTGTCTTCCATCCACCCATTTATTCACTCACTCACTTGTTCACTCAGCAGGTATTTGCTGAGTGCTTCTAATGTGCCAGGCACTCTTCCAGGTGTCAGGGACACAATCAACATTGAACAAAATGGATTCTTACCTTTGTAAAATTTAGAG-TTAGTTTAGGGGAGAA---GACAGTGCAGAGAAcgtaaagaagtaaaaaatccaataaatacaTTGGCATTGGAGAAGTG-----TAAAAAGGGT-CGATGGCAAAGCTGCGGAAGTAGATTGAAAAATTGGTAATTGCCAACCACTTCCA----ATATTGGTATCTTCAAGGAGCTTTTAAAAGCGTTTTCTGTGGGTTTG

a score=72247
s chr3           102123555 5296 + 160039680 [encoded data, 5802 characters]
s HiC_scaffold_1 112234513 5081 - 233722169 [encoded data, 5802 characters]

a score=42897
s chr3           102131376 2548 + 160039680 CTCGTTTTCCCTGTGTACACTGA-TACTCACCAAGCAACTGGATAACTCATGGGCTTGC-----GTGGATAACTGCATTGTGGGTTTATTGAGGAAAACTCCCAGCATGTAGCACAGGCCCTGCATCGCCACAGGTGCCCAATACCGGCTCATGCCCC-CATTGCTGAGATGCTTGCAGAGAGCGTCTCTGTAACTCTGTTAC-------------CTAGGGCCCATCTCAGCTGAGAGTAGTGACAGGCATACTTGGAATAGCCTGTCAGAAAATGAATATGGATTCTTAATTCTAAAACCAATTTCCAAGTGCACTCTGGAAGGGCAGGCAGAAATGAAGCCTGCTTCACAGAGTTATGGGTGCTCAATTCCAGCTGATGGCAGGCGACAGAGACATGGGACCGCCTAATGAGACCTGATCGGGATAGTCTGTGTGGCGGTAATAGCAAATGTACAGCCGTG-AACCTCAGCCTCTCTCTCTGGTCACTGCTGGGTTTTCCTAATAACCCGG--TGCACACACATATATGTCTGTAACATTCAACTCCCCAGGGGATCGGGCCAACGCAGAGCCCACTCTTGtttttaataataatattttctatttaatCTATCTTGGAATTTTGGGAGGTTTTGTTCATCCCAAACTCAAAGGGAGAAAATTAGCATTTAGATAGGATTGCAGGAGCATTAAAATCAATCGAAATGGAAATGG---TTGGAGG-GGGTTGGGTCCCCA-----------CCCCCATAGGAAGACTCTGTTATGACACT-AGGCTTCCCAGTGAATACCTCTCTCTTGGCAGCTGCCA---TCAGTATGCACTTGGCTTT--------GTTTCTCCCTCTCATAGCATG---------GAGTCTCCAGAGGGTCACATTTCCTATACAAGAGGCTGCTCCAAACTCTCACTCTTTCTTCCCTGGTCATAATCAACACACAGGCAGCCTTCCTGCCCTAGATGTAAATATGAAATTCTCTGTGCTATCTGACAAGCTCCCTAGTTTGCTTTCCTTTCTCTGGCAATCCCTCCTAGGGCACATCCTCAAACAACCATAGTCCCAAATTCCAACCCCTCCTTGGAGCTCCCCACATTCATAGAGATGTTCCCGTTGAgggctgaggagatggctcaggggctaagaacatactgttcttgtagaagacctggcttctgatcccaacactcataatccagccacacaca------gctgcctggggagctaa----cacccttttctggcctctttggatatcatgaactcacatggtgcacaaacatgtgcactcatacacatTTTAAAAAAATCTTAACAAAACATTTTTAAAGGATTCCTATTGATCTGGAATTGAAATTTGAAAGGGCTCCAGGGAAACGACCCAAATCTCAGTGTAGGCAAATCAGGAGGTGTTATTGATTTGTTCTGAGGG--------------------AGGGCTCTGCTTCTCCAGAGTCATTGGTTGCATCTTCAT--CTCTTGTGTGGATACCAGTGACCCAAATCCCGGGTGAGCTG-AGGA---CTTTTTACTGCCC-TCAGAGGG----TTTAGGATCTGCCAGCCACGCTTAGAAGTCCCTGTACCCTGGTCCACCCCTGATGATAACTCCTGGTGGGGAACCTCAAAATTCACATTTGCAGAAGTATCTTGAAACTGTCACATTCGATAGAGCTCTTTCCAGAGTTTTTGTTGCCCCTGGAGCCTCTGATAACCCAAACTCATGCTCTTACCAATTTTCCCTTTGCCGCTGC----TCTCGGGACTCACCAGACTACAGGAGTGAGACACATTCATTGTTAACTCTTGTGTCTATTGTCCTGTACCACTCATCAGCATCTATTTCCTTTATGTGTGCCTGACTCATCTGTGCCTGGGTGTCC-------ATCCCCTGCCAATTCCTGT------CTCCTGGGTGTCCATCCCCTGCCAATCCATGTCTCCTGGGTGTCTAT-CCCCTGT-CCATCCCCTGTCTCCTTTC-----TTCTGCCAGCTTCT-GTGTTGCTGCCCCTGACACATATTGTGTCTCTCTTCTCCTAAGAG--GAAACGCTCATTCTTTTCTCTTTCAGGAAGACGACTTGAATGGGATCCACATCGTGGCCTTTGCGGAGAAGAGTGACCCAGGTAGGATACCTCCCCCGCCCCCACCCCAGCCTGTTTCCACCCTGCACCAAATCTGCTTAACCATTGGCAGGA---ACTTCTCACCCTTCCAAGCCCT--CACCATTCCAGTT------CAATTGCAAGAGAGTGGTCAC---CTGGTAGGTA-------GGAGTGTGTCTTCAGTGGCAAACTCAGCTAAGGGAACTGTAGAACTTCAAGGAAAGTCACACAGCTGGG--TGTGCAGT-CCCAACTTTGGGGAGGGGACAGGAACATCAGCAGTTCAAGGCTATCGTGGGCAACTTGAGACCATTGTGTTCTGATACTCAACTTGGGAATGAGCATATTCAAGCACACA-GtcttacagagggtatgtgtgtgagtatgtgtgtgtgtatgtgtgtatgtatgtatgtgtatatgtattgtttctgtTCACATTAAATGTTTGTC-----AGTTTATTATCAAACCTATACAAACCAATCCTATTTTAACATAGTGATAAATGTTATGTGTTCCTCTGTAAAA
s HiC_scaffold_1 112242987 2280 - 233722169 cttctcctcctcattCGCACTGAGTTCTCACCAAGCAGCC---CCTCTTGCAGGCTTGCCACCCATGGACTCTTGCTCTCTGGGTTTATTACTGGCA---CCTAGCATGCA--------CCAGTTTCTTTCCAGGTGCTCAATACAGGTTCGTGCGCTGAATCTGTGAGATGCACGCAGAGAGCTGCTGGGTCCCTTGGTTACAGCTCTCCTCCATCCAGGGACTG-CACAGGCCTGGGGAATGATGGGCCTATTACGAGCAGTCTCTTAGCAAACGAATATGGATTCTTCATTCTAAAGCCAATTTCCAAGTGCGTTCTAGAAGGGCAGACAGAAATGAAGCCTGTTTCACAGAGTTAACAGCACTCACTGCCAACTGATGGCAGGTGACAGAGACACAGGGCTGCCTAATGAGAACTGATGGGTATATTCTGTCTGGTGATAATAGCAAATGTAAAACAGTGAAACCTCAGACTCCCCTTCTGGTTGCTGTCGGATTTGTGTAATAAACTGGCATGCGCGCAcgtatatatttgtaaaattctaTTCCCCAGAGAATCTGACCGAGGCAGCGTCCACTCTC-TTGCTcttaataatattttctatttagtcTCGCACagaatttttggaggttttatcCATtctaaaagcaaa-ggaaaaaattagcATTTAGATAGGATTGCACCAGCATTAAAATCAATTGAAATGGAAATGGAGATCAGAGGAGGGTTGAGACTCTGAGATTTTTGTTCTCCCATAGGATGATTC-----TGACACTCAAGGTGCCCAATAAACACCTCTC----AGTATCCACCATAGTCGGTACTCACTTGGCTCTGCCCCCTAGTGCCTCAATCTCACA-CATATTCCTGTTCAGATCTCCTGAGGATCATGTTTCTTGTCAGACAGGCCCCTCTGGACTCCTGCTCTTCCTTCTCTGAGAATAATGAAtgcaaaaacagc------aacaacaacaacaacaaaaaatccacc----------ACAGGC-----AGGTGGTTGT--------------TCCTTTCTAAAATGCAGACACA-------------CGACATGCTGGCCCTT-------------------------------------------------GCTGGCCCTAGAATTTGAAATACTCTCT-------------CCAGTTTCTTTTTCTCACCTTGACTGCACAGCTACATAGACTGTTCTCAGTCTGCAAGGCTGAATTCCAGACTCTGTTTCCCTAT-------TCAGGAAAT---------------------TACTGATACTGATTC--AGCAAACTTTA----------------------------------GGTTCAGAGCCGAAAGGACCACAAGGAATGCACCTGGAACTCA-------CAGTTATGGAGGTGTTCCTTACTTAGTTTGTGGGTCCCATTGACTCAATCAAGCAGTGTTGTG-GTGTCCAGA-----------CATATGCATGATTCTTGTGTGGACAGCAAT-AGCCACATCCTGATTGACTTGCAGGAGTCCTGTCTGCTGCCCATTTGAGGATAACTTTAGGATCTGTCAGC----------AGCTCCAG-AATCTGGTCCATCACTGATGATCTCTCTTGATGGGGAAGT---GAATTC----CTGCAAAC--------AGACTGCCGTCAGGGAGAGAAC----TCCAGAGTGCTATTTGCCCTTGGAA-TGCTGATAAACCAAAATCATatccttcttcattttgcttttgt--ctgcCATTTTTCTGGAAACACCAAACCACAAGAGTGAGACCCACTTAGTGCTATGGCTT-TGTGTAT------------------AGTTGCTATTTCT----TGTCTTGCAAACCCATATAT--CTGAATACCTAATCAAAATTCCATGC--ATTCCTGCAAGCTGCTTATGAGTGTTCCCTTCCTTAGCATGCACCTTGcctgtttctctctgcctctgtggcATTCCCTTCCTCCCCACAACATTTCCATCCCCTCCTCTTGACCATGCCTCTGGTAC----TTTCTATCTCTCCACCTGAGAGTATAACCTCTGATTCTTCTCTCCTACAGGAAGATGATTTGAATGGAATCCACATTGTGGCCTTTGCAGAAAGGAGTGACCCAGGTAGGA-------------ACCACC------------------------AACCTGTGTAGCCTTAGTGAGAATAGACTTCTGGTCTTCCTCAGCCATTCCTCCCCTCCACCCATAAAGCTACTATAAGATATTGGGCCCCCTCTGGTGGTCAACTACTCATAGTCTGTCTGCAGTTTTGCacaca---aagggaa------------aagaaggtGTGGACAGATGAGAACGTGAAACATCCTGCTTAGAGGCTCGAACTGGGA----AGCAGCGC----------TGGGCA------------------------------CTGAGAA-GGGCA-GCCAAAGCATACCTGCCTTACAGTATGCATGTGTATGAGTGTATGGGTATGCA---------------------------------TCTGCTcacattaaatgtttattttccatgtttgtgATCACCTCCCTA---------TCTATATTAGCCTGATAATAAATGTGATCTTTaacactataaaa

a score=59509
s chr3           102134816 4581 + 160039680 [encoded data, 5320 characters]
s HiC_scaffold_1 112252348 4884 - 233722169 [encoded data, 5320 characters]

a score=137641
s chr3           102139703 7462 + 160039680 [encoded data, 8581 characters]
s HiC_scaffold_1 112258221 7870 - 233722169 [encoded data, 8581 characters]

a score=64919
s chr3           102148849 5523 + 160039680 [encoded data, 6309 characters]
s HiC_scaffold_1 112271236 5531 - 233722169 [encoded data, 6309 characters]

a score=94332
s chr3           102155403 3505 + 160039680 AAAAGAATCTGTC-TTCTTGCAGATCTCAAAAGGGA--GTTAGAGGAAAGAAGGGAGATGATAAATGTTGG------------------------GTAAGCATTTACTTTATGAACTTTAGCCAAGAC-----AGTTTTGACCCCACGGGTTAC-CTAAGGATGTGTGAGCCTCATAACCTTAAAGTCCATTTTAATTCC------CACTTCCTGAGCATTCAATTCCAGGACTATTAAAGACTGCTTTTTCTTTTTTTTTTTTTTAAGCACACAATTCTGAACAAAAGTTGTCTTATCTACCTTTGTAGATAATGAAAATCACCCGGGAAAGACGGCAATCTCAGACCTACACTCTTCATTGAGTTCTTCCACAGTTAATGTTAGAATTTTAATAACTTAGGTTAGAAGTTATAGGGGGGGGGGAATCTATAAACGTTTAAGGTAA-TGGAATCCTGTGTCCTCTAATAGGATCATGTATCCTACTAGCCTTGGGGAGCAATTTACATCCTTTAAAAAGAGTAGGCTATGAGGGTCCAAGAAATGAAATAAAACTTTATTGTCTTCAGTTGTGTGATGCAGCTTTCTGCAACTTCACATTTCTTTTGCAAACTCTCCTCTACACCGTTC--GCTTCCACGTCAACTCGGCCTGGTAAAACGCTGGGAGCACAAAGACTTTA-AAGGATCCTGCTTGTGATTTTGGCTTTTCTTTCAGGAA----------TCGATGCAAACTTAAGCATTTTGAAGAAAAAAAAAATCGATATTCAATTTACAACCAAAACAATAATTTCAGGAAGTCTGA-AGTT--CTATGCAAAGGAGATGGAGAGGGGCCAGGAGGGAAAATAAATTAATTCCTTAATTTAAACCGTTCTTTGCCCTTCTGGGAATGCACATAC--CAACACAGGGCTCCAATTTAACCCCTTTAAGACCCATGGTTTAACCAGGAGCAGGAAGCATAGTACTGTAAGATGTT-------------ACCTTTAACGCTGCAGTACTTACATTTATGGCACTTAACAACTGAATGGTGTTGGTGGCGGAGCAGCTCTGCTGTGACATTACCCTCCACACACAGCTG--GTCTCTCACAGACTGCCCACCCCTTACCTCGTTCTCCTAAAATATTTCCTGAGTAAGACATCCTGAGGAACTTCCAGTA-GAAGGGACCTAAAGGTTTCAAAGTAAGACCAAAGCACC-TGGTTACACTATAtgtgtgtgtgtg------------------------------tgtgtgtgtgtCACA-----GGTTTC----TCTTCCTTCTCTAGCACATCTTTCTGAGCAAAAGTTATTGAACAAAAAAATAACATTGGCTTTTCTAAGCACAGGTGTATCACAAATATTCCATGCCAATTTGGATTTTTTTTTTTTTTTTAATGACAGACAAAATCGCTTG--GTTCGTGGAATGCACA-GACAGAAGGGT-------ACACATATATGGGCACGGAGATGATGGCGGCCTTCTCCTTTCCTGAAATGAGATCCCTG----AAACTGATAAAGGAAA--------GAGTACTTGGTGGAGCATTGCTTCGGAT----GTAGGCAAGCAGAGACTGGGACAGCCCACTACAAGGTGTCAGGAAATGACTCCTTGGGCACTCCCCTGCA-CAGGACTCTGCCAGGAAGCAGCTATGTCTACAAATGGGACATCAAGGGCATTGTCCTCTGAAACCAGCTACAACATGC------TGACAGAAGGAGCCTTCGGGACTGCACGGCTGACT--CAACTCTCCCTTTCCC----------AGCGACCCTTTTCCTT-------------------------------------------------------------------GTGATAAGTTGCACAGTGGTGGTGGTCACAAACCTCAGGGATGGGACAGCAGTAGTTGCCAGGGTGGTGGGCACTGTTTGGTTTCCCGTGGCAGGGAAGCTTGGCACATGAGCTTTGTTGAATACTTGTCTCCCTGGGAAATTAGATGGCTACATGGGGCACCTGCCAAC-TGGGAGTCACAGTGTTGGTCTCTCCTGGTTTGTGTGAAGCAGGGCTGAGGAGGACTGGGT-GGATGGGCTCCTGCTGCAGCCTAAGGGAGGTGCTGCGGCTGAATAGATCCCCAGAGTCATACCCTACTTCTCGGGAGAAAGACTGGGAGAGGCTGTGCAAAGAGCTGTGGGTATACTTGGAAAGCCAAATCCCTGACATCTCTGGAGGACCAAGCTAGCCTGGCCAGGCTGCCCACCATGTACAG-----CTGTGGTCCAGATGCTAAGGAGAGTGGGCGTTAGAGTGAAGCCCAGGTAGGCAATCCCAGGGCTAGGGAAGGGCCAACAGAGGAGCAGGGCCAAAAACAGGGCAGGTAGGCTCTCTCTCAGGGGAAAATGGAAAGCCAATCACTTAACAGCTGCAAAACGGCAGTGCACATTTCCTATCAGTTTCTTTCTCTTCGCAATGTAAGGCAACAAATGATTAAAAACTCAGGCGGTTGGACATTTCCTGTACTGCCCACCACTCCCCAGGGTGGTGTGGTGATGTGGATAACTACATGCACAAACACGCAAGTGGGTGTGTAGTGTTTGGCTTCCTGAAGCAGAATAAAGTGAGGCCCCTAGGATCTATGAGGTGGTAGACCAGAAGTCCAGGCGGG-TGTGGTACTGGGCCACAGGCAGGGACCAGTTGTAAGGCGAGGCTCCCAAGGACACACAGCAGCTACACTTTGGTTTACAGCTGTCACAGAAACTCCAGGGAACAGCTTCTTCAGAAGTCCCATCTATTAAAGTCAGATGCCAACAGTCACTTGTTG---GGGTGGGCATCTCCTGCTTCCTTCCAAATAAAGTGCAGATGGTCGAAGGATACTGGTCTATCCTCTGCCAGTTTGAGTCAGCATTGAAGAATTTTAAAAAATCTTTATAAAAGAACTTCCTCCTGGACatatatatatatatatatttatatatTCTTTTG-TTTTTCATAAAGCCACAAGTATAGAAATTTTAGACTGATGTCTCAGACTGTAAGCGAAGAACAAACTTGTGAGATTTAGGGTCTATGAACTCTTCTGAGAGTACAATGAATGGGATTTTCTTCACATTGACCACGAGGCTGAAGTCCAAGCATTTAAGGACGAAAACAATTCCATCCCGTAACCCGTTTGTCACAGCCTCCTCACTAATAAGTCTCCACTGTGTCGAGAGCCATCGATCCTTGTCATACTGCAAGGTGGGGCCCGCACTGAGGTATCGTTCAAGGAAAGCCTGAAAGCCAAGGAAGAACATTGGTGAAGTTACA---AGGGTTGCTGTGCGTTATAGCTAGGCTCCATCTTGTTTTCCCT-----AGAAAATGTTACCCAACTACCCC--ATACCTTAGACTAGAGTTCAGCCTCTCATGCTGAAGGCCC-----ACGAGACCCTCTCTGTAG----------AAGGAAGACTCCTTGGGCTTCGGAATTTTCTTTTGGCAATTTACAATCAGAGGGTGAGTT------------GAGGGAAGTGGAT---------TGGCTACCACTGTTGATGTAACATGCCAC------------CTGAAGACACGGGCACCTCTC------CCTCCCTGCTAAAGCCAAGAATCCCCGAGGGCAGGCTGAGTGCCTGGAACAGAGACGTAGTCAGTGAATCCTGGGCAGACAGACAAGG-----ACAACCGCACAGACAAAACTGCAtggctctaccacctgctgg
s HiC_scaffold_1 112276974 3533 - 233722169 aaaAGAATTTGTCCTTTTTGTAGATTTCAAAGGggaaagacagaggaagaaatagaagTAATAATAATTGGACAAAAACTGGTGGTCAGATATTTGCAAGGGCTTACTTTCTGAACCTTAACACAGGCTTATGAATTTTGACTTAATGGATAATGCAAAAGATGGAGGAACTACATAACCTTAAAATCCCTTCCTACTCCAGAATGTACTTTTTAAACATTCAGCTCATAGTCTATTAAAAATTGCCACAT-----------TTTTACAAACACACTTATGAACAAACATTATCT-------ATTGGT------TAAAACACCACCAGGGAGGACAGCAATCTCAGACCTACACTCCTCATTAAGTTCTTTCACAGTTCATGTCAGAATTTTAATAACTTAAGTTGAAAGCTATAGAAA------AATCTATAAACATTTAAGgtaaatgaaatcctgtctcctCTAATAGGAACACATATTCTACTTGCCTTAGGGTACAGTTTACCCTGTTCAGAAAGAATAGCCTACT-GGTTCCAAGAACTGAAATCTAAATTTACTGTGTTCAATTGTGTGATTCAGCTTTCCAGAaccttac-----tttttaaaactatcatTCACCTAGTTCCCACTGCATTAGTAACTCAAACTATTTAGAGGTTGAAAGTGCAAAGGCTTTAGAAGGATTTTGCATTTGATTttg---ttacttaaaaaaaaaaaaaaaactcaatacaaagttaat---------gtaaaaaaaaatcgatattcaatttaaaaa-gaaacagtaatttcaGAAAGCCTGACAGTTTCCTATGTAAAAA------------gtcagagaagagagaaaataagttCCTT----TAAACCTGTCTTCAATCTGCTGGGAATGTACAAGCAATAATGAATGACTCTAACTTAATCCTTTCTGGACTGGCAATTTAAGACAGGGTTGGAAGCACAGGGCTTTTCAATGCTGATGAATAGCGTCATTATTAATTCTGT----CTTACATTT--GGCATTTC-CAACTGCACCGCATTCG-AGCACAGCAGCTGGTCTGGGCCATCAGCCACT-TACACAGTCAAAGTCTCACTCACATTCACCATCCCTTACCCTATCCCCCCAAA-TATTtcctgagaaacacagcatgaGGAACTTCCAGCCTGAGAGGAGCTAGAGGCAGAAACTAAGAACAAAAGCACCATGGTTACATGGTATGTGTTTTCACAAACAGAACCATGTCATAAGATAGTACACCCTGGCTCCATGCCACACCTTGggtttccccttcctccttctccagcGCATCTCTTTCAGCTGAAGGCTGTTGATTCCAGGACAATGTTTACTTTTTCAGGTACAGGTGTACTA-AAACATTCAAAGCCGATCGcgatttttaa---------aatgacacacaAGATACTATACCACTTGTGGAATTCATAAGACAATAAGGTTCGGTGCACACCTACAAGGA---GCATTTCATAGCA--------TTATCCTGAAGCAAGGTGGCTGTCAtaaagagatagagaaagaggaGGGTGAGCACTTTTTAAAGGTATATTGAAGATACAGGAAGGCAAACAGAGGCAAAGGTTACCCACTGCTGCATG-CAGGATGTGGCTCCTGAGGGGTGTCTCTGCAGCCAGGCTCC-CCAGAGGGCTGTTCT--CCACAG-CAGAACAGCTGGGAGAG---CCTCTGAGACCAGCTCCAAAAGGAAACACACGGCAGAAGAACAACTCCAGCTGAGAATACTGGCTTCCTACTCTCCCCTTCCCCCAACTCCCCAGCGTCCACTCCCCTCCACTTGACAAGGACTAAAAGCATGGCACAAGCCACGCAAGGCCCTTTCCTGATAATAAGTGGCTGAGGTGATAAGGTGCACAGTGATG-TGGTCAGATGACACAGGGCTGG-ATAGCAGCAGCTGCCAGT-TGGTCGGCACGGTTTGGTCTTCCTCAGCAGGGCAGCATGGTA-------------AAAAATTCACCTCCCTGGGACATCAGATGGCCCCAACAGGGACTTGCCAACCTCAGTGTCACAGTGTTAGTCTCCCCTAGTTGGTGTGGAGCAGGG--GAAGAGGACTGGGCAGGGTCAGCTTTGGCTATAGCTTAAGAGAGGCATT----------------CCAGTGGCTGACTCTCCTCTCT---------------------------------------TCTACCTGGTAGGCCA--TGCCATAC-TTTCCCATGGAACAATCTGGGATGAATAG--TGCTTAGACTGTGCAAAGGGCCTGTGGCATGTCTGCTAGGGTGAGTGAGA--CAGAGTGGAGCCAGGGTGAGAAAACCCAAGGCTAAG-----------AGCAGAATGGGATCAGAAACATAGCAGGGAGgtttttctttgggaaaaaata-aaagtgaatcacTTAAGAGCTGTAACCTGATAGTGTACATTTTTTGTTGGACTCTT-CTCTGAGAAAACTAAGGCAACAAAG----AACAACGAAGAAGGCAGG-CATCTCCTAAACAGCTC-CAGCTCCAC---------TGGTGATGCAGACAGCGATTCACATATAGA------------------------------GGTGCAGCAGAGAGATGGTCCCCTCGGATCTTCAAGGTGGTCAACCAGAAGCGATGGGGGGCTCCGGGACTGGCTGGGAGTCAGGGACGAGTTGTAAGGCGAGGCTCCCAAAGACTCA--GCAGCTCCACTTTGGTTTATAGC-------------------ACTGGCTTCTCCCGAAGTCCCATCCGAGACAGTCACATGCCACCGGTCACTTTTTGTCAAGGTGGATTTCCCCTGCTTCCTTCCAAATAAAGTGCAGATGGTCAAAGGGTACTGGTCTATCACCTGCCAGCTTCAGTCggcaatgaagaat---aaaaaatttt---aaaaagacacctCTCTGGACATATATATCTCTATatatattcttcttctttttcttttttataaagcctcaaatatagaatttttaaactgATGTCTCAGACTGTAAGCGAAGGACAAACTTGTGAGACTTGGGATCTATAAACTCTTCAGAGAGCATGATGAATGGGATTTTCTTCACATTGATGATGAGGCTGAAGTCCAAGCATTTAAGGACGAAAACAATTCCATCCCGCAGCCCATTAGTCACGGCCTCGTCACTAATAAGTCTCCACTGCATAGAGAGCCAGCGATCCTTGTCATACTGCAAGGTGGGGCCGGCGCTGAGGTATCGTTCTAGGAAGGCCTGAAAGTGAAGGAAGAGCATTAGTGGAGAAATACGCAAGCGGGGAGCGAAGTCCTGCCAGGGGCTGTC---CTTCCCCTATGTAAGAAAAGGTTTCCCACAGGCGCCGAGGGTCTTCAGCTGGAGCCCA-CTTATCACACTGACTTCCCTCCTTTCACACCTCCCACTGGAGTCACTGCGGCAGGGAAGTCCTCTTGGCCTTCCTTATTCCTTTTTGTCAATACCCAACCAGAGGAGAGGTGGGGCTACCCACAGAGGCAAATAAATGGCGGGGGATGGATGCCATTAGTGATGCACCAGTCCTTGAAGGGCTCAGGCCGAATGTACAtgcttttctcactttttctcaCTCTTTCAACCAAATG-----GAAAGCTTCCTGGGGAGCAGGCACAAAGGGGTACCCAGTACATGCTTGCTGAATCAATAGAGAGCCTATATTTGCATTGAAAAAAGTACCTGG-TCTACCACTTACTGG

a score=26669
s chr3           102163243 580 + 160039680 TGTGACCGGCCAAACCCAGGGACATTTCTGCCCCAGCCCCGACCTAGCAGCGCACCTTGGGGGTCATGCTGTTGGTGATGCAGAAGGCCAGGTGCTGCAGGATACTCTCCATGCTGTGGTAGTGCTGCTGCCGTGTGGTGCGCAGGTACTTCTGCAGTGCCCTGGCCATGGAGGGGAAGATGGCCTGGGCTGCCTCTCTGGGGTCCATCACCTCTCCGGGAGACTTCTGCTGCTCCTCAGCCTGGAGACGCTGGATATGGATGAAGGCTTCCTCCACAGCCACTACCAGTCTGGAAGGAGATTCGGGACAGTCAGCAAGGCAGCGCCCACTGCAGGGTCTGGGGACAGTCCCATAAGATGCAGAGGGCCTTTATTGACTGAAGCACCCTGG-CCTACCACCAACTTCCCCAAGGCTCTGTCATACTGTATCCCTCTAGGAGATGGAAAGAGCCTGGGAGAAGAGAAGCAACAGCAGAAATGAGATGGGAGTGGGTGGGTGGTATCGCTGGG-----------------CCTCCCAGTTCTGCCAATAATGAGCTCAGAAAGCTCACTTTAACCTGTGCTTTGATTTCTTCAATAAAag
s HiC_scaffold_1 112284285 567 - 233722169 TGTGATTGGCCAAAGTTGGTGACCCCTCGGGCTGACAGCTGGCCACATATCACACCTTGGGGGTCATGCTGTTGGTGATGCAGAAGGCCAGATGTTGGAGGATGCTCTCCATGCTGTGGTAGTGCTGCTGCCGAGTGGTTCGCAGGTACTTCTGTAGTGCCCTGGCCATTGAGGGGAAGATGGCCTGTGCCGCCTCCCTGGGATCCATCACTTCCCCTGGGGCTTTCTGCTGCTCCTCAGCCTGGAGACGCTGGATGTGGATGAATGCCTCTTCCACTGCCACCACCAGCCTGGGAAGTGACATGACGTAGTCATCAGAGTAGAACCCATCACAGTGCTTGAGAACAGTCCCATGGGGCTTGGAGGGCC-------ACCTGCCCAACCTGATCCTGTCATTAACTTGCCCAAGCCTTGATCACATTATCCTCC------------AAAGGGCTGggggaaagagaaacaaaagcaaaaataagatgTG-------GGGTGGGGGCGCTTGGAATGGGAGATGAACTCTTTTTGCAATTCTGCTACTAACAAGCTTGGGAATCTCCAATcaa-----gttttcatttctacaaaGAGAG

a score=55332
s chr3           102165010 3128 + 160039680 ACATGGGAAAT-------GGT---GTGGGTGGGTCTTGCCCCCTCCAAGGgcag-ccacagat----------gccccctggaaatctgctctgaatgcagattcccaggcccaggcttaggcccac--agaccacgtggtaagccttgtaagtgggcccaggacctgtgatgggtgtttagaggtatgtctggtggtgattacacacaaagtctgagaaACGTGAGAGTAACGTGGTCTGAAAACAGTCATCCAGGGCATGCGTACAAACAGAAAATTAATTCTGGAAGttaaaaaaaatttttttttttaaGTAAGAATAAAATGTTCAGCGGGAGGAGGGCCCAGGCGTGCAAGGGTCACAGACCTTGCTCTCCGCTTCTTCACCCTGCGTTCGTGTTCGGCCTCTTCATAATACAACTCGTTGTGGCTGGAGTCTCTGCGCCGAGCTGCTGCAGCAATCATGGCTCGGGACTGACCAGTGGCGTTATTACTAGGCCCTTTGATGAAAGGAGAAAGGTAGA----TAGCTTTAACGGTAAACGCCAGGAAATGGGACCGAGAAGCAGCACCAGGGTCTGTGGTCTGCTAGTTAGCGCCCACCCACGCCCCTACGGAGCAC---------CCCTGGCTGGGCCTGCGCAG------TACTCCACGCTCA--------------------------TGGCAGCCAGGAGATCTAACCCCAGTGTGATGGG--GAAATGGAAAAAGAACTCTGAAGGGGCTGCCAACTGCTCACCCCTGAAAACGCCGGCCAAGAACAACACCCGCCGGAGCGTGCCGAAGAGGTCACTTACCATCTGCTACACAAAGTTTCAGTTTGGCCATAAGGGCAGCTGGGACATCGCATACAGCGGACAATGAGAGAGAGTGGGCAGGATGGGAGAACAAGGACAGACAGAGAAAAGAGAAGTCAAGGGACACTGACAGTGACCACACACAGGAACACAAGCTAAGCC-GAGTGCTATCTCCCCCAACACCAAAGCCCAGCAACCGCAATACGCCCCGCCCCATCTGTGAATCGACCTACAAGTCCCGTATCACCCTGAGCATGACCCAACTTAGCTTATCACAAAGACACAGCCAGGACCTAA---------TGCTTTCTTC-----------TGGGTGCCTTAGAGAA------CTAAGTTTCCCAATCAAGGGTGAGGCTTACCAGTCATACCCC--------TCACATAGCCaaatttaaaaaaa--------aaaaaaatatttGA-----ACACTAATACCAAAAACTGATACC-TATGTAAACCAGATGTCTTACTGACAACATGAATCTCTCTGGGAGTCTGCAAAGCTCTTGTCTTAGCCCA-GGTGCCCAGCAAGACGTAAGAGGGAGTCCTGTTTCTCACACTTAAGCATCTGACACCCTGAATGAAACTGGCCTCTGACTTGGTGAGTCTGCCTCCAGCTTCTGGTTGCCATTC----------CTGGCCAGGACTGAGAGACTAGAGAGGAGCTCCCAGATAGCTGACTCTCTAGGCTGAATACGTTTCTAGGCCAGGGTGGAGTATTCTAGGCCGAAAGCCCTGAGAGCATCGCAGTCTTTTGGTAAACAGCTCAGACTTTGAAAAACATTCCTTTCCGAGGA-CTTTCAATCTAAAGTGTTCCCAGCAGGAGGCAGGAAACACAGCTACAGTTTCCAATACCAAAATCTCCAAGTGGATGAACTTGATATATATATACACATATATAGACTGTAACT-GACATTCCCCCGGAAAAAAATGTTTGTCTACATTTAAACTAAAAATATAAATTGTTCTAAAGTGAGAAAAGACCGTAAGGCAAGCACAGAATACAGGGTTGAAGCAAACGTACTATGAGGTTTAAGCCACAGAGCCACCTAACTGTGCGCCCCCCCCCCCAAACGGTTTCAAG-CACATACCATCTACATTGTAGACTTTCAGGCCAGCCATGTGCTTGGCTGCTCGGAATTTGGATGCTGTTAGGAGGTTCGGGTTATAGATGGTGAAGTCCTTGTAGTAATTTTCCAGAACCACCAAGGCTGCTCGCTGGATGCTGTAAAATGAGGGCAAAAATGAATGCGGGGTTTTCACCGGAATTCAGTGGGGCTGAAATGAGAAGTCTTTCTGAGTCAGGTCAATTGTAAGTCAAGGTAGCCCTCCCAGGAAAGTCTGCTGGCTCC-TACAC------TCCCCATGGCT-------------CCCACTATGGCGGCTTCC-------TCTCCTTTCCCAGGCTCTGGCATTCCCCATATCCCATTCAGCCAGAAGCTGAAAGAGGAGAGAATTACAAGCTGTAACTGAGATTTAGGTTTGGGGTACATAAAGCTTTTCCTGTTTATCCTTAATTTACCAAAAAAAA-----GGGA----AGGAAGTTGAGAAGCTCGCCCCCCCC--------CAAAAAAAAGGTAGGAACTTTGATGATGCTCTGAGACCCTCATTCAGTAATTGGTTacacacacacacacatacacacacacacacacacacacacacacacacacacatacacacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagGCGGAGATT-TGCCCCAGG----TCTAAGGAACT----------GGTCTCCCATG--TTACAGCAATGTCCTCCCTATGGGGCAGAGTCCTTTAAATGAGGCTTCAGTTAAACGCTAAGATATTCTGGGTCTTAAGATCCTCAGAAGCTCCTGCCCTTCAAG----TGTCCTGGACACTCAGCAGA----------TAATAGCTCCAAGCTACCATTTTGGAGCTCAGGT--------------------------------------------------------------GATAACACACATATCCCAGAAGCATGC--TGGGAGCTGAACAGAACACT-------------GCAGGATCCCTGCTGTTTCAGAGATCCACCAGC--TGTAACAGGGAGGGGCTTTCACTCATCTCCTCCCTTTTGACCTTCACGATCACTCCAGGGAAGAAAACAAAGGTACAGAAACCCACAAGCCACACAATGGCATGGCATGCCTTAGAGTCTGGCTAGAATTCTGGGGTGGATTAACAACCT--AGATGCTGGCCCTTCACCCTGCG---CTGTGTGTCCTGACATCTGCAGCTCCCGAAGCTGTTCGCCAAACACGCTGC-ACTAAATACCACA-GCTCTGTTTTATCTTGCCCTTCTGTGTCTCTTTCCCAGCGCTCTGCTAAGATAATGGGCTTATAAGGATTATTTACAATGGCCTGAATGCCAGGACAGGGACTGCCTTGGATTCCTGGAGGGCTATGCGGCATCCCAGGGCTCTC
s HiC_scaffold_1 112287349 2994 - 233722169 ACATGGAAAATTAGCAAAGGTTGAATGGGCAGGACAGGCCTACTCCAAATGTGGGCCACAGACTAGCAGCAGCATCCTCTGGGAATCTATCAGAAATGCGAAGTCCCAGGTCTCATCCCAGAACTACTGAAATGGCATTGTGA-CCTTGTGGATGGGTCCTGAGCCCAAGATCTAGGTCAGCAAGCCCTTTCTGTGAAGGGACCA-------TCTGAGGCA---------AGCGCACTCCAAGGGC--TCACAGAAGTCATGTCTGtaaacaaaagctttgttttgccagtgaaaaaaag---------------aaaagaaaggggttC--TTGGAGGAGGGTT------------GGCCACACACCTTGCTCTCCGCTTCCTCACCCGACGCTCGTGCTCAGCTTCTTCATAATACAACTCATTGTGGCTCgagtccctgcgcctggcggctGCAGCGATCATGGCCCGGGACTGACCGGTGGCGTTGTTACTGGGGCCTTGGA-GAACGGATGAAGGGAGAAGCACAGCTTTAATACCAAGGGGCtgggaatggagcagaaaataagCACCAGGGTCTATCAG-TGCT-------GTCCATCCAC-CCACTACAAAGCAAACACACAGATCCTAATAGTATCGTCCCAGGAGAGATACTCCACATTCCCTAGTCCTATtccctttttctatttcttccagTCAGGAAATCTGACAC-AATATGActggaagaaatagaaaaagaactcaGAAGGGGATA----------------AAGAATGTCAGTCAGTCAAAAAAACATATGGAGTGTGCtgaagatgtcctttatcatctgTTACACAGAGTTTCAGTTTGGCCACAAGGGCAGTTGGGATATC-----------ACAATGAGAGAGAATCGGTGGGATAGGAGAAcaa----aagcagaggaaaagaaaaccaaggGACACTGAT------CACATATAGAAAAACAAGCTAAGCTAGAATGTCATGGGCAGTAATGACAT-TTTTGGAAAATACAA-----------ACACTTGAG----GACTTAGAACTCCTATTTCATCC---------CCTGACT--GCTGAccacaaagaca-aggcagaacCCAAGCTTATCAATGAGTTATTTGGCTGGAGACTTGGGTTCCCCAGTGGGTACATCCTAAATTTCCAGATCAGAGGTGAAATTTCCAGAACAGGATTCATAGGAAGTCATACATTCATATGCaaagaaaccaaattaaaaaaaaaatctaagggaGATACTGTCACTAAAAACTGACACTACACATAAATCACTTTACTTGTTGAAAACATGA-TCTCCTCTGGAATCCGCAAAGCTCTTGCCCTGACCCAAGGTGCCTGGCAAGAAATGACACCGTGTCCTGTTTCTTACACTTGGACATCTGATACCTTCAGCCCAGTTCAC-----ACTTCCTTAGTCAGCCTCCAGCCTTTTGCTACCACTCAACTCCGGTCCTAGCCAACACGGAGAAACCAG------GCACCTGAACTACTGAG----------------ATTTCTA-----------------------------CTCTGAAAGGAC--------TTTGACTACCAAC----ATTCTGAAAATTAGTCCTTTCCTAATAGCTTTCAAGATGAGGGAGTCCCAACAGGAGGCAGAACATATTACTATTGTTTTCAAccataaaaattctaaa-gaatgAAAGT----------CCCAGATATTTAGACTATAAATCAACAATCTTCTG----AAAATGTCTGcctacttttttgaaaaaaaagtaa-ttggTCTGAAACGAGAATGTAC-ATAAGGCAAGCACA--------------------------------------------------------------------TCACAGACAGTTTTAAGGCACATACCATCTACATTGTACACTTTCAGCCCGGCCATGTGCTTGGCTGCTCGGAATTTGGAAGCCGTTAGGAGGTTTGGGTTATAGATGGTGAAATCTTTGTAGTAATTTTCCAGAACCACCAAAGCTGCTCTTTGGATACTGcaaaaagaagat-gaaattaaTACAAAGT--------AAATTAAGCAGGTCTGAAGTAAAACATCCTTTT------------CTCTGAGTCAACG-AAACATCACACTGAAGTTTGTAGTTTCCATATACCTTGTATCTCcaggattaaaatttaaagacccagctAAGTCTGGTCACCAAGTGGTTTCCTTGCCAAGGCTCCGGCAGTAGCCATATCCCATCTAGCCAACAGCAGAATGAGGA---AGTTACAACTCATAACTGACATTTAGGGTTAGGTTACACAGAACTTTTCCTATTT-TCTCCAGTTCACGAAAAAAGGACACTGAGACCTTGGAGAGGCAAGAGACTTACTGGTGTCACAGAGTGAAAGAACAAAGCACATACTCAGGT----TTCTTAGGACCCAGTTCAGTGCTTTGTCTCACA-GCTCAC-----------------------------------CACTCCT-----------------------------------------------------GTGTGTGAGGAATTCTGGGTTTAGGTCTCATGTGAATCAGAAGAATTCTGGGTTTTAGGTCTCATGTGGATCAGAACAGTGGCACTCACAAAGGGT---GCACTTTAAAGAAGACTCCA-------TCAAAGATCATTTGAGGATTAGGGTCCTCAATGCCTCTTGACTCTTGGACTTCTATCTCTGGCTCTCAGTAGAGGGGTCAGTCTGAGTTCATCAAATTCTAATTT----GCTCAGATCTATAGAAAGCAGCAGGGAAGAAGAGGACAGGGAATCTCTACAGTAGGACTGTGTATGTGGGGAGAGTGCCCATA-CTCAGAAATGGGCAGTGGTGACACAAGAACATATTCTTGGTCACACAAACAGGATATCTTCTACCTCGCAGAGAAACTTGCAATGGTGCAGTGA-AGGTTTTTGCATAGCCTATCTTATGTGAACCTTATGATCATTCAAGATAAGAAACTGACGCT-CTAAAGTCTATGATCAACACCAT--CATCTAATACACAAGAG---AGCTAGAACCCTGATGCAGACCAACAAACTTCCAACTCAAGCTCTTTCCCCTGTAAGCCTGTGTCTCC------CTGCAGCTCTCTAAGATGTTCACCAACCACCAGGAGGCTAAATATCATGCGTACATCCTTATTGTACCCCTTACATTCACATTCCTAGTATTCTGCTGAATAGATGGGCTCATGAGG-TTA-CTAGAATGGCCAGAGGACCAGGGCATAG-CTCTCTTTGATTCCTGGATGACCACAGTGCACTCCAATGCTCTC

a score=28734
s chr3           102168895 1585 + 160039680 AAAAGTCCAGAGTTTAAAGGTAGTTTCGGAAGTTAGCCTCAGGCCCACCTCCAAAGCAAGCCT-TGTGGTGACTGCTGGGTTTTG-----TTTTTCATCCAGGTCACAAGGAGGAGCCCAGAGAATTCCATCGGCTCAGTCCAGTGCCTT----CATCCCACATGTGCCATCTCTATAAGTGCCTTCTGTCCTTGTCTCCCTCTTCAGAGCTCCA-----------ACCCTGCCACCTTAGCATGGCCTAAGACACGGTTGA-----GGTAAGGCCCGCAGCTGC--CAATGT----TGGAGCAAAACTCTATGCATCCCCTAAGAACTTCCCACAGATAGGGCTGATGCCCAAGGACAGAGCCCCGGGGCTTCATGCAGGGCCTCAACCTTGCCAAGGCCAGAGAAG---CCCATCTCCCAAGAAGC--ACAGAAGAGAAGAGCAGGCATCCTGCGCCTTCTCCAACCCCATCATCGCACAGAGCTCCAGCGTGACTCAGAGCCAGGCACGGTCCTGGCCGGATGCCCAGGCTGACAAGCTAATGCAGGAGCTGAAGTACTC---GCGCCAAGTTTATAAATGCCTCCAAGAGCTGTGCACACTCTCGCCTACAGAGAACCATTTGTCTGGCACTCAGCACATCTAACAATACGAGGGAAGGAGACTTTCCACAGAACT-AAGACAACACACAACCAATGTGCCCAACTTTAAAA---GGTTGCAGTCGTTTGAGCTAAAATCCAACATCACAGTG-CTTCATCTTTTTTACAGAGCAAACTATGTACTGCATGCCTGAAGT--CTTGCCAAGATACAGGATGGTGATTCCTTGTGTTCATGGCTGAGCTGTGCTTTGTACATAACAGCCATAAGTCACGGGTGCAAACAGCAGGCAGACGTTCCCAGTGCCCATGTTC--TGCTCCAGGCTACAGGAACAATCTAAGCACTCAGAACTCCCTGGTTGATGTCATTTTCCACATTCTCCCTTGCTCTTAGCAAGCAAAGTCATTTCAGGGG------TTTAGGTGCAGGCTAAGTCATAGACCC-ACAAGCCCAGGACTTACAGTGCATCCCTTCCTCCAGCCAGTGTCCGTGCTCAGACACCTTCCTTGCCTTGGATCCTCTGTATCCTCCAACTGTGGTACCACACAGG----------------CCTCTATCAGTAAGCCT-TTCACACTCCCTAGACCCTAAAGTCTGTCCCTACACTCAGAGCACCCAGCATAACACAGACCAGTAGTGTCTCCTACAAGGAGTTAGATATGCAACCCCTGCCTCTTTAACTTCTTACACA-AGTCCCTCTCACACAAGCAAGGCCTCCTGTATTTCCTCCATATG--TAACACTTGTTGGCTCAAATTGTCTGTTTATAAAACCTTAGGATTCCCATAGGTTTAACATTAAGATCTTAAGGTTTAAGACTAAGAAGAATTTCATGAAGCCA-----TTAGAGGCAAAGGCGGGGGGGGGGGGGGGGCTGAGAGATGGTTGAAAGCAAATCTTTAAACTCATCCTGATTCCTAGACAAGATCATCTCTGAGGAAAGACAG-GGGCAAGGAAAGTCAAACTGGCGGGGAGCTTGGCA--TCATACCAGCACTGGAGCCAGAGAGGAGAGGCAGTGAGCAGGCCAGCCACCTTCA
s HiC_scaffold_1 112291286 1516 - 233722169 aaaatttaaaagttaaaaggcaATTTTGGAAGTTTTTCATAGGCCTGTTTTCAAAGCAAAACTCTCTTGTGGCTGTTGAGTTTTACATTTTTGCTCATCCAGGCCACCAGGAAGAATCCAGC-ACCTCAGTTGGGTCAGTAAAGGAAACTGTCACATTGCTCACCACACATCACAATCACAGGCCACTGCCTTGTTCTATCTCGGAACTGCTCCAGCAGGAATCACACTGTGCCACCTTCCTCTGGC---AAATGCTGTCCATACTGGGCAAGGCC-ACAGCTACAGCAAAGTACCTCGGAGCAAAGTGCGAGGCCTCCTCTAGAAA-------------------------GAGTCCAGACACCTGGGTGT-------GAACCTCAGCCTTCCCAGGACTGAAGAAGAATCCTCTGCtccaaaaaccccacaaaacagaAGATCAGA-GTCCTGCTCATCTTGCAGC---ATGGCTTCTCAGCACT-----GTGACTCAGTGCT-GGTGTGGACCTGGCTGGCCTCCCAGGCCAGCACAGTAA-ACTGGAGGCGAAGGACTCTCAGTGCCAAGTTTACAAACGCCTGCAAGAGCTGAGCACACTCTTACCTACAGAGCATAGTTTGCTTGACATTCAACAAATATAGCAACTCTAGGGACTGAGAATTACTACACAACTAAAGATAACACATAATCAGTGTAGACAGCTTTAAAAAATGGGTATAGCCTTTTGGATTAAAATCCCCCAT----GTATCCTCCACCTTGTTACAAAGTAAACTATAGCACACAT---TGGTGCCACTTGCGAAGATG------------TTTACGCCTTCATCACTGAACTGCAGTGTGT-CTGAACAGT--GAAGACACAGGTACAAACAGCAACCAAA-GCTGTCTGCCCCTGTGCTCCATGCGCCAGGACACAGT-GCAGTCTGAATACTTGAAGCTCTTTGGTGTTTATCCCTTACTCTGTTCT--GTTACTACTGGCTATCAAAGTCAGTTTAGTTGCTATACTCTGGCACTAGTCTCTGTCACAGTCCCTACAAAGCCAAGATGTA-GGAGGACGTATCCCCCTAGCCAGAAGAAGGGCTCAGA-ACTCTACCTGCCTTTA---------CTCCTGCAAATATGGTACCACATGGGGCCGAAGTAGGATTGAACTCTTTCAGGAAGCTTCTCCACACT--------------GTCTCTCCTTAAACCCACAGCATCC---------CAAA-----------TCTTCCAAGGAGTCAA----GTTATTCTTGCCTGTTTGACAGCTTGTGTGTGGTTTCTCATGCCCAAGGGACATCTCCTTTGATTTCTCCACAGGCATAATGTTTATTGGCTCCACTTCTGTATTCATGAAACCCTATAATT-CTATAGATCTA-----AAGATC----AATTTGACAGTATAA-----TTCACAAAACTGTAATTTCAGAGGCAAA-------------AAGGGTCAGAGAGATGAATGAAAGCAAACCCTTTAACTAATCCCAATCTCTAGACCAGGTAG--TCTGGGGGAAGAAAGCAGACAAGAAAAATCAAGGCAGTGTGGATTATGCCACCTCTCGTCACTACTTTATTCAGAGGCAAAAGGTAGTAACCCGGTCAGCAAGCCTCA

a score=67543
s chr3           102170730 6477 + 160039680 [encoded data, 7773 characters]
s HiC_scaffold_1 112293627 7135 - 233722169 [encoded data, 7773 characters]

a score=42570
s chr3           102178458 3135 + 160039680 actcttcaaatctgggcttgctt-tagtcaa-------gaatgaacacagcagaagtgttgctgggctggctct----cagcctgagctctgcggggcctgagaacttcttcttgagcatccttcgaagcctcaagctgcc-cctgaca----tctagatactgatgcaggagc-----aacgagtccatgtgggagatggagagtatctcaggagatgcaaagaaggaccaaagctgagtcaggctggctcaccatgtgtgcataattacacaaggac-tcaagtaggcttag-agaagacccacccagtagagcctaacccatgctgcagaaccattcgatataaaatgatggttgttttaagctactgtgttttaggctagatattacacagcactagGT--------------TTGAAGGAGGGAAAGTAGAGAACGTAGGAACGGTTTGGTCAGAGAGTCTCAAAGCCACTGCTGCAGACCCAAGGACCAGCCTTGGGAAACTGGTCAGTT--AAGAACTGGTGGGTCTAAGGG----ACCAGAGAGAATAAGCCAGCCATTGCTGCCACCTGCCACCTGCCTCCTGTCCAC---------CCAGCTGTAAAGAAAGAGCCGGATGAATATAACAT-----------CATGACATCAGCTGGTACCTGGTAAACGTG------------------------------------------------GACATAAACCCTCTGTTAGGGGCCGGTACAATGTGAggttaagatcactctgagaccagaccatcagggctcaagccatgtctctcacagttacaaatgc--------cttatagaacttcctgaattctctgtgcctctgtttcctcatcaaccagcgaagaagacagtgcccaccccacatgactctcctgaagactgagttctgtgttcaaagc-aagacagcacctgacCCCTGCTGGGAGCCAGCTACTGTGTAGCTGTTCACTGTCA--------------------------------------------GCTACAGGAGTGTCTGT--TCCAATAGTTACTGAGTTTTGCTTCTAAGATTTCAAATCACAGAAAATACT----GCAGTTATTAAAAGTCATTCTGAGATCTGTTTTCCATATTCATCTGGGTTTCTCCCCTCACACAGGAAGTTAAAAAATAAATTATATTTCTAGTAAAGTTAAAGAAAATTTAGCAAATCACTGAGAAAACC-------------TGACAAGTGGGATGTGCATGGG--CTGAGACCCCACCCCCACCCGGAGAACCATGG--------------AGAACAGAGGTGGGCAATGAACTGCACCGTGCTA----CCTGCGAACCTGCACCTGCTACTGCGAACAGGTCCCTTAACCTGTCC-TCAACTGGAAGAGATGT------TAGCTGTTGTCCCACCTGCCCTGACCCCCAGAGGTGGGGTAAATTAAGTCCAAATATAAAAAGCCCACGTAACACCTAAGGCATCAGTTAAGAGCTAGGTCATATCTTACATCTATTTATGGAATTTCACAGTCTGCAACAATACTCTCTTCCATTTCTGAAGGTTTTCAAATAAACCCCTAATGATCCCTGCTC------ACGAGGAAAGCCACAGCAAGGGCCTTTTACAAGTGCTAACAAGAAGCCCATTTTCTTTATGAACCTAAA-GAGTAGGCATTCTTTTGAAAACTCTCAAAAATAGCTCAGACCATTCAGGAAAACCTCCTTTGAAAATGAGAAGAAAGACCTCTCCAGCACTCCACACCTAAGCGCAATAGGTCACTCTGCAGCGAAGGCTTTGCATAAAGGGGAGGCAGAAGGGCCTGGGGTTCTGGTTGGGTCTGCTGACGACCTGCTATTCTGATGTCTGGGGCTTGCTTTGTCCTTCCTGCTCCCCCCTTCCTCCTGTTTTAACAATTT-ATAAAAGGGCTTAGAAGTCATATTTCTGCCCCACTGGTTCTTCCCACCATGGCTGGGCTTGGGCCAGATTTAGCCCATGGAGCAGCAGGTG------------------------------------------------ATGCAAACTGGTTGTCACAGGTCACCTAGTGCTGTCCAGGG-------AGAGACAGGACACCTTTCCTTCC------ACCTCAGAATTCAGAATCACCTAAGGGTCAAACCAGATCACATAAAAGGAGGGAGAGTGAGGACCCAGGGAAGAAATTTC-------------TCTCAAATACTCCCCTCCAAGCCCGTTAGACATGTCACTTGCAGTTTTCCTA-GGACCTGAGGTG---AGCCT----------------TACAGAACTTCCTGAG---CAGCAGCGGGCCAGCAGTCCGGGAG---------------------------------CAGTCTGGCTTCTCCCACCCAGTTCTGCCCCTGACCCACATA---------------GCAAAGCT-----GCTGACAGGGATTCTTT------------------------TCCTACTTTGCAGG------------------------------------------------GGCCGTTGGGTCGGCCC---------CTTCCATTTGCACCCAGGTCTCA-----TGTAGGGGTG---AGGT-------CAACCTGTTTTTGAGAAGAGTGGGAGCCCAGAAGGGATTGTTCCTCCCATCAACCTGGAC----TGACCTAAGG-------------------------------TGAGGAAGACATTACCCTTCTCTGTGCAACTGGGACGGAC--ACTACTCAGAAGGAAGACCGGGACATAAGGCTACAGC-TATCTGTCCT----TCACAGTCT--GTGGCT--------GCCACAGTCCCAAATGCTATTCACCTGCTAGGAGACCACAG----GTCTGGCTGCACAGCATAGATCACAACAAAACCGGCCTCGGAGCTGGGCTGTTTGCCAATAGGCTTCATAGCTGCCGCTCACTGGCTGACTGAAACTCCCTATCTTCTTGTGCCCTGGTCTCCATC-TCAGGCTTGGCAGAGCAACT--GTCCACTTCAAAGCCATATGCCAGCGACT-CTCCAAGTGCCTGGGATCCCCAGA----------AAACCCTG---GGAGATATCACTGGG--GAGGGGGTCGGGTGGGGAGGGGTCC----------------------TTCTCTAGTATAAAGACTGGGGAGAGAGTTCTCT---------------AAGGTTCCAGTGCCCCAGTAGCTTCCTGGCTTCCACA-ATTTTACTAGCATCTCTG-GGGGATTAGAAACCAACTTATCCTTCATGGCACACCAATTCAAAGAGAAACTCCCCTGGGAATCAATCATGGTGACAGCAGCCTTGAACACTAA-AGCAGCCTGT-CTCAGGCAGGACGAGCTGAGCCAGAGGACACAGATGAGAGTGTACGTCAGCAGGACACTGGATGAGCAGTGGGATCT-ACTCCAAGC-GGGGCTGGGCCACTTCTCTGGACAGTAGCTAGCACAATGACAAAGCCAGTTATTCTAGTGACCACAGCGGTGTTCTCACCAGCCCTGGCTGCTTTGCCATGTGACACATCAGCTTTTACTGCTCAGGACA----------------------------------GTGAAACTTTGAAGCCAGGCATTCAAGGTGACttatt
s HiC_scaffold_1 112301111 3575 - 233722169 ACTCCTTGAGTCTGGGCTGGTTTATGATCCATTTAACAGAGACAATGTAGCAGGAATAATACTGGGCCAGTTCCACCCTTGCTTGTGAGCTCCCGAAGCTGA-AGCTTCTGCTCTTGTGCTTTTGGAAGCCTTGAGCTGCCATTTAAcaaatctcaaaatacaaatgcaGAAACCAGGAAACGAGGCCCTGTGGG-GAGGCAGAGCACTCCAGAA--TACATGGAAGAGAAAAGCCCAGCCCTAGCTGGCTCAC---ATGAATGTAATCACACAGGCACCTCCAGCAGGACCAGCAAAAGAACTCTGTTGCTGAGCCCACCCAACGTTGTAGAACTG------ATAATAAGGTGGTTGatttaa---actgtatttt-------------cacAGCAAGGGGTAAAAGACATCTTCCTTAAAACATGTGAAgaacagaaagtaaaaa-ggaCTAACCAAAGGCTTCCA--TCTACCACTATGGTCTTAAGGACCAAGTTCTGCCCACTGAGTGAATGAAAGAACCAGGGAAGCTAAGGACCGAACCACAGTGCATGAGTTAGC-AT------------CCATGTGTATCCTCTTCATGCCGCCACACCAACCTTGAAGCCAGAA---GTTGAATGAAACACGAATGGGTAGCCAACACATGGCCTGACATGTAGTAAGCATGTGACACTGCTCAGGAGTTTGCTTACCGGCTCACAAAGCAGTAAATGCCAATGTGAACTCTCCGCTCAGAGGTAGTAGGGTGAGTAGCTGAGATACTTTTGGAACTTGATCGCCAGGGCTAAAATCCTGGCTGAGACAATTATAAAAGTGGTAAGGGCTTGGACAACTTACTTATCTctcaaagcctcagtttcctcaactaaAAACAAGGTTGACAATTCCTAACCTGGAGGAACGTCATAAGCAATCAGTTGTATGTGAAGAGCTGAGAAGTTACCTGA-------TAGGTCCTAAGAATTGTGCAATTGTTCACTGTCATGGTTTGCTTTGTCTCTGTTCTACAGTTTTGCATCTCAGAATCAGCTACATTAATGTCTGTGTTCCAACATGCACAGGGTTTTCTTTTAAggatttcaaaactgaaaaattattcaTTAGGATAATTAAATGTCATTTTAGG------TCTCTTTATTCTTATGAATTTCTTCTCAAATACAATTAGATCAAAAATCACTAGT--TTCTAGCAAAACTATAGAAAAGTTAGCAAGTCACTGTAAGAACCAGGCCAAGAAAAGTGACAAATGGGGTATGTATGGAGAATTAGAAACCAACCACA---AAGAGACCATGGTGCtaaggagagagagaacaagggTATG--ACACACAGCA--GGGCTGGAGTCCTCAGAAGTTACATT------------CTGGCCCAGTGACTCTTCCAGTCACTGCTGGGTTTGTACACCCTGGACTCTACCCGATCTGCTCTCATCTCCAGAGGAAGGGTATATTAAGACCAGACCTATGAA----------------CGGTGCTGGATGAAGGTGAGGCAGTCTCTT-CATCTATTTATGGCATTTCACATCTTACAACAATAACCTTTTACATCTCTAAAAATTTTCAACCAAACTTC----GATCTCTGCTCCTGCCAGCAAGCAAAGCCACAGCAAGTGCCTTTTATGAGAGCTAGCCAGAGGCCTCTTTTCTCTAAGAAGCTAAAAGAGCAGTCACTCTTTTGACAATTCTCAAAAATAGCTCAGGCCATTCAATATCACCATCTTTGAAGCCATGAAAAAAGAACTCCCTGTTGCTCTGGCCCTCACCGAAGTAGATCTCTCTAGTGGCCAGGTTTTGCATGAAGGGAAGGC-GAAGGGTCTGAGCCTCCAACTGGGTCTGACGAAGACCTGGTATTATGAGGCCTAGGAATTGCTTTG------CTCATCCCCCTTCCCTCTTGTGCTTACACTTCAAAAAAAGGGCTCAAAAGTTACA-TTCTGGTCCAGTGACTCTTCCAGTCACTGCTGGGTTTGTACCAGATTTAGCTCA-GGGTCAGCAGGTGACTGGGACCTCAACAGTGTCAAGGGAGGTGTCCACACTGTTCCAGCTCATGCAGACTGGCTCT-GTAAGGCATACATCCCTGCCTGGGGGCTCTGTACAGATGTCTCCCATTTCCCAGCCATATGACCTCAAAATCCA-ATTGTCCCAAGGAGGAGCAGAGAGGGCtttataaaagggaaggaaaggagtcAAAAGAAAGATCCTGAATTAGAGCGCATTCAAAATGCTCTCCTCCAAGGCAACTGGACAT----CTGTGGGTCTCCCTAGGGAGCTGGAGTGGCTAGCTTGCATTTAGAGAATGAAGACAGTATTGTCTGTGATAAAACAATGAG--AACTGCCTAAGAGATCTGCACAACCCTGTGAGCTCTGTGGCATCATCAGTCTGGTGTCTCCCACCCAGTTCAAACCCAGACCAGCACAGCTCTGTGGCTCCACGCAAGTCTCCATGTCTCCCTGGGACTGTCTGCTCCCCTCTGGCCTCTACCAAGATTTTACTGTGCAGACCACATTGACCATCTTAGAGGGagaagcaatgtgggaaagtcaGTCCTGCCTGCTGGATTGACCCAGTATGACACAGCCGTGTCCACATGGAGTTCAGAGTTTGCagaagaaaacaggtagaaaaataAGCTGCTCAATCAAAGGGAGAGATGCCACAACGGGGCGTTAATTAACTCAGTCCTGACCTCATGACATGTGAGTGAATCCTGAACAAGATTAGACATAGTATTTAAGGAAGATACTACTCTTGCCTTTCCAGGTGGGATTCACCAACTA--CAAATGAAAGCCAGAAGGAAAAAGTCACTGCACATCTCACTTCTGGCCAGAGTTCTGGTATCTCACAACTAGCCACAGTTCCAAATCCTATGCATTTCCACTGTGACCACAGCTGAATTCCTCTCCATTGCTTTAACTTCAGCAAAACCTTTCCTGAAAC-AAACTACTACTGGCTGAGATTTAATGCTGCC--------ACTGTCTTAAATTTGCTG-CCTCTTACACCCAGTCGTCTGTCTTTAGGTCTATTCCAGCAACTAGGTACACTCAACAGTC---TCCTGGCTTCTGCCCCAAGTGACTGAG-CCACCAGAGTTTGGAAACAAACTCTGACTATAGCCACCCCCAGGTCGCTGAAGTCCCAAGGCTTGGGTTCTAGACACATAAGTCTGCTGACCATTCTCCAGTGT--AGTATGGTGAAAGAAAGCTCCCAGAAATGAATATGGGAGGTATATGGGCAGCTGAAAATCCCTCACAACAATAGATTTTATTGCAAAGACTATGTGAATTAG----------------------ACACCAATTC-----------CCTCTGCAGATCAATCAGGGTGGTGGCAAGCTTCAATACTAACATCATCTAGTCCTCTGGTGCTTTGAGCTGAGCCAGAGGA-ATGAAAGAGGATGCATGCCAACATGATGATGGTTTGGCAATGTGACCCGACTCCAAGCTGGGGCTGGGCTACCTCCCTGGGCTCCAGCCAAAGCTACGAGAGAGCCAATTGTTCTGGTGCCCATTAAAG-GCCTTTGCCAATCTTGGTTGCTTTACCATCGCACATGGCAGTTTATACCCTTCAGTACACACTGCCCAGGAGGCAGAAGAGCCCAGGGGAAAGGTGAAGCTTTGAAGTCAGGCATCC----TGAGTTATT

a score=62517
s chr3           102183540 1953 + 160039680 gcaTCATTTTGGACAGAATGGAAGTACTAGTCACCTTATCCATTATCCCCAAGCCAAGTTCACAGTCAAGGTAGGTAGCCATCATTGTGTCTATCTTTGGGAATTGCCATTGAGGTAGAGTGTGAGTCCAGTAAAACCCTGAACTTATCTGAGAGTCCCATGGA----AAGGCACGGACACCCCACAGCTCACCCAGCCCCTACTAACACCAAG--GGTCAAGCCCCAGTCTTAGCATCGCGGGAAAGGCACAGACACCCCACAGCTCACACTGCCCTTAGTAACACCAGAGAAGGGTGGGGCTCCAGTCTTAGCATCTGCCTCTAGGGCTTCATCTCACCCCTGCC--GACTAATAACATCTGTCTTCTAGGGTTATTAGTCATCCTTTCTGCTTACTCCGTGTGCATGCCCCTTACCTCAAGTGTCCCAAGCTGTAGAAGCGGGACTCTCCGTCGGTGGAGCGGACCACCTGCAGGGTGAACATGGGTTGCAGCTGCCTCAGCTCCAGCAGGACGATGGCAAGGTAGTGGATGAAAAGCAGCGCGTCCACAAGAGAGACTGCGTATTGCACGATGTCCTTGTAATTTTGGTCCCGAGAGTCCAAAATGCGGACCCCATAAAAAAGCCAGTAAGAAACCACAAAAAGAAAGATAAGGACCAGTAACAGCGCTCGGAACACAAACACCCGCGGCACATCCGCTCTTTGCTTGCGGAAGAAAAGTGCCCAGGTTCCGATGAGCAGAATAAGCAGTTTGAATGATACAGAAATGAGAAGTCCCTCACAAATGGCGCCACAGGGTTTCAGCTCCTCCCTCCACAGGATTTGGGGTAGCAGGATGAAGGC-AATGGGGGTGAGGAAGACAAGTAGTC-CAAGGAACGAGGCAACGGTGAGGCCCAGATAGCGCTTGCAATCCAGCCCCACACTGTCCTCCATGTCCTTGCTAATCCTGGCAATGTCCTCTTGGGATATACTGTGCTCTGAGGTGCCTGTGATTGCGGTGGTGGTCTCTCCCCAGTTGTCATCCTGATGACAGAGAAGATAACGA-----------GGATGATTTATAAAAGCCACAACAAAATAAAA---------TACTTCAAT-TAGCCAACTTT-TTTGGAAGT-GTTCATA------------GAATCAGCTTTTAATACAGGGACATTTTTAA-----CTATAGCTATTTTCATTGAAATTTTCGCCATATATTTTATGTTTGCCCTTTG-AACCCAGAAAACACAATCTAACCTTTCAATTTGTTTGGGAGATTTCATTACTATGACACC--TTGTCATCCCTCGAATTGAAAAGTTCTGGGAAGCCCTGGGTCTAG-GCCTTTCTGCTCTGACATTAATAG--CAGCTGTTAGACTGAGCT-----GAGCTGACTCCACTACAGGAGAACAGCCACCCTTACCGCAGTAAACTCCGCC-----CATGCTAAGTTCT--AGGCTTACAAAGCCCACATCCAG----------ACACCCCCGCCCC-CCA-GTAGCTCCACAGAGCAGAGAGCATAAAACAGGAATTCCCAGCAC-ACAGAGGT-CAAACTCACCCACAGCTGAAAACACACTACCTAAACTTCTGTATGACATTTATAGGACTCA-----CTTCGGTACAGAACAGCATTGAGGATTCTTTGACATCATTTCTCACTGACTAAATAAAGAAAATTCAAAACTC----TATGGCCAGAAGAGCTCAAAAATTCTCTCTAAAACATGTTTTCATAATAAACTGAG---TGAGGGTATAGGACTATC-AGGGTTATTATA----TCTTTCACTTCATTATTTTCTC----CTTTAATGCTTCTAGGCAGTTGCTGCTGTGGGCTCCTGGTGTGATCATTCAACAAGAGTCTGGTGCTAG--ACTGTCAGATGCTTTTGCTGTT---CTGGAAACTAGGACTCCATTTCAGGGCACAACAGAGC-------------TGGGGTGCACCAGAAACCATGT----GAGCTCCGTGCATATGACTTAACCAGGAAAAATATCCCATATAGAACAAAGTGTTGGAATGAGGACA
s HiC_scaffold_1 112305279 1945 - 233722169 GTATCATTTGgggcaaaataaaattaacagtcACTGCATTCATTGTCCACAAGTCAATTTCAGGGTCAAGATAGGCAGCCATAACTATACCTGT------------------------------------GCATCACACCAAAC-------AGTGTCCCACTAGCTTGAAGGCA-GGCTAAACCAAA----ACCTGAACCTGGCTCACAGCCAGTGAGTCAGTTCATGGACACTGCACCACATG--------------TCCCCAGTTCACACAGCCTAACACAAAACCAGAAAAGAG----GCTTACATTCTGTCATCTGCATCTG-----TCATC--ACTACTGCCACGCTGAATACCAGTGACCTTCTAGA--TATCACTTGCCCTTTCTGCCTCCAGAACGCCC---CCCCTTACCTCAGGTGTCCCAAGCTGTAGAAATGGGACTCCCCATCAGTGGAGCGTACAACCTGCAGCGTGAACATGGGCTGAAGTTGTCTGAGTTCCAGCAGGACGATGGCCAGGTAGTGTATGAAGAGGAGGGCATCCACGAGGGAGACTGCATATTGCACGATGCCCTGGTAGTTTCGGTCCCGAGAGTCCAAAATGCGGACTCCATAAAATAGCCAATAGGAAACCACGAAGAGAAAGATGAGGACCAATAAAACGGCACGGAACACAAACACTCGTGGCATGTCTGCTCTCTGCTTCCGGAAGAAAAGCGCCCATGTCCCAATGAGCAGAATAAGGAGTTTGaatgacacagaaataaaaagtccCTCACAAATTGTGCCACAAGGCTCAAGCTCATCCCTCCACA-AATTGGGGGCAATAAGATGAAGGCGGATGGGGGTGAGAAAAACCAGAAGTCTCAAGGAATGAGGCGAT-GTGAGGGCCAG-TAGCG-TTGCAGTCAG---CCACGCTAT-CTCCATGTCCTTGCTGATCCGGGCAATGTCCTCCTGGGATATGCTGTGCTCTGAGGTGCCTGTGATGGCCGTGGTGGTCTCACCCCAGTTGTCATCCTGATG--AGAGAGGACAATGGCCATAAGAAACTGGTCATTTGCAAAAGACACAATGAACTTGGAGGACCTGCTGATTTCATTCTATCCAACTCTGTGTATTAGTCTTTCATAAGAATGGGAGCTGAATCAACTTTtaatctaga---atttttaaaaaccttctaACAATTTTCATTGAAACTtccaaaatgtattatatatgtacCTTTTGCAACACAGAAAATATAATTGAACCTTTGGATCTGCTTGGGTGA-CTCACTGACACAACACTAATTATAATCCTGTG--TTGAAAAGCCCTGAGAAGCTCAAAGGCTTGTGCCTGTTTGCCTTATCAGAAAACATCCAGTTGTTAGATTAATCTTTTGGGAGCTCAC----CTATTGAAGAA-----ACCCCT----CTGTGTTCTCCTCCAAATTCATGCAGAGTCCTAAAGGCTTACAAAGTCCAAGTTCTGTAAGCAGGGAACAATACTACCCCACCATATACCTCTATGAAGCAAAGAGCACAGAAAGAGAACTTATATCACTGCAGGAATCCAAGGTCACCTGCAGCTgg--------cacataaattatttttaaaca--tataatgCTCGAAAGTCTTCCTTAATAAGCAACACTG---------TGACAACATTTCTCACCAACCAAACTGA-ACAATTCAAGAATCTAATTATGGTCAGACAAGCtcaaaaattcttttcaaaacatGTTTTCATGACAAACTAAACATCAGGGGCACACAAATAACTACAATTATTATAATGTACATTTACTGTCTTATATTCGCTCAGTTTTTAAACTTATAGGTAGTTATTA----GAGCAATTTATCTATTCATGCAAAAAGACTCAGTTGCTAGGAATTGT-AAACACATTCGCTGTTTCATTGGCAACTGTGATTCCAttccagggcacaacagagcaAGAAAAGCAATGGGGGATGCA-CAGAGGTTTTGCCTTAGAGATTCAGGGAAATGATTTAACTCTGAAAAAACAGACATAGCAGCAATATTGGTGAAATGGGGATA

a score=95796
s chr3           102186720 5556 + 160039680 [encoded data, 5996 characters]
s HiC_scaffold_1 112307383 5082 - 233722169 [encoded data, 5996 characters]

a score=87355
s chr3           102193121 5006 + 160039680 [encoded data, 5579 characters]
s HiC_scaffold_1 112312775 5115 - 233722169 [encoded data, 5579 characters]

a score=15275
s chr3           102198594 955 + 160039680 CCTTTGGCCAT---CAAGAGCCCAAGCCTAGCCAC-AGGAAGCCTGGAGTCCAGCCA-AGCTGAGCCAC-------------CTGTGATCAGCCCCTTCCTCGCCTTGCCTTCTTGAATCTCAGTCTGCTCACTTGTCAATCAGGAATCCAAGCGCCGGCCACCATCTCCCAGGGTG------AAGCTATAAACAGACA--------------------------CAGACTTGACTCGCTTCCTAGCTCCAGGACCTCAGTCAAGCGATGCGATCTCTTTGAAGTCCCATCTACAAAATGTGAGCATCAGGAGTGCTTTGATGACTCTATGAGCTGGCAGTGGTGACAGTACCCAGCGTGGGCACCACATGCACTGGGTAAGTAAAACTGGGTGGCCCTTCAGTGGTTTCTAAACTCCACCATCTCCGTGCCTTTCTCAGTCAAAGGAAAGCTTAGAGAGCCACAGGGTGGAGGGCCAGCACCTC-CCTCCAGGCCATCC--------------CACCCAAGTCTCACCTGCTGTGGGCAGAATGGGGCTGCCCCTTAggctgcctgctcacccaccagctgtgtactggaacacggcagtttaatctctcagagctgtg------gattttccacccagtaaaagaaaggcaagcagcctgcttgggaggaagggggcgattctaaaaactaaacatgaaac---taagcaggcatctctcagaacatt--agcttggcTTCAGAGCCGAG---TCTATCAGTCTTTCTCCTCCTCCCGTTTCCCAGGGCTTTCAACTGCCACT-CAATGAGCTTCCAGCACACAGTGCTCTCCCTTCCTTTCTGCTCTGGCTTGTGCTCCTTTCCCACTGGCCTTCTGGCTGGCAGACAACCAACCTTAGGAGGTACAGTCAGGATATGGGGGCA--AAGAACGAAAGAATCTTCTCTCCTTGATAGCCAATAGCTGGACTCTTGGTTGACCTGCAGATTCCAAGGCTTGGCACCTTCTCCAGAACACTGACTGTTCTTCTCTAG
s HiC_scaffold_1 112317911 939 - 233722169 CCTTAGCCCACACCCAGGTGTCCAAAGTCAGCCATGAGGAAGCCTGGGTTCCAGCCCTAGTTAAGCCACTGCTTCTCACAACCTGAGATAAGCCACTG---------GTCTTCTTGGGCCT--GTTTGCTCATTTGTTAA-----------AGCAGTTACCA--ACCTCACTGGGTGGATGTGAAGATACAAGCAGACATGGTATCGAGAGTGGGGTTTCAATCACAGACTCCATTTGCTCCTGAGCTATGGGACCTCTGTCAAATGATTAAACCTCACCGAACCTGCACCTGCAGGCTGGGACTGTCAGGACTACTACAATGACCACATGAGC--------------------------------ACATGCACCCGGTAA-TGACAGTGGGTGGCCAGTC--TTACTCCAAAGCTCCAAGTTCTCC----TTCTCCTATTGATGGAAAACCTCGGAAAGCATCAGGGCAGTAAGCAGGAGGCTCACCTGTAGGCCCACCATAAGCTGGGAGGTCACTCTAATTCCACACCCTAC---CAGGCTGGTCCTGCATCCCA------CCACTT-CCTACCAGGTTGCTACTG-AGTAAGGCAGTCAGACCTT-----GGTGTGACCTCAGGTTTCCTACCccatgaaaaggaaataaga----tatTCTATACTGAGGGAGTGACTCTAAAGATTAAATGTCAAACATACAGGCAAGCGTTTTTTAACGCTTTCCAGAAAGACTTGAGAGCCGGGGGATCT-----TTTTTCACACTTCTCTGTCTCCCACCATTTTCACCAGCAATTTCAATGAGCTTTCAGAGCCTTCCAGTCTCACTTCCTCTCTGCTCTGGGCTTTGCTGCATTTTCACCGGCTTCATACCTGACAGAC-ATCAACTTTAGGAAGCACAGCCAAGATGTGCAGCCAGTATAAACCAAGA------CTCTCCCTGGGAGCCCGTGGCCTTGCTCT--GCTGA-CTGCCAGTTCCAATGTTTGCTCTTTCCCCCCCAAAATGGACCTGCCTTTTCTAG

a score=104525
s chr3           102201743 4983 + 160039680 [encoded data, 5467 characters]
s HiC_scaffold_1 112322507 5004 - 233722169 [encoded data, 5467 characters]

a score=22178
s chr3           102213078 819 + 160039680 gtgtagtctgtgga------caagtatatacttcatcaGGGCCGT---------GGCTGCCTTAA----CAGTCACGATCTGTGGACCAAACAGACTAACCTCGACAGAGGGGCCAGCCCTTTGGATGCCTGGATGATTCTCTGCAAGTCTAGGCAGGCAGGCCAATAGGCTCTCAGTCGCAGGGAGGGAACCTGATGCCAGGTGTGTAGATATGCAATCTCAGA-GGCAGAGCCTTCCAGGTCGACAGGCAACCCCTGAGCTTGGCCAGCTTTGTTATCACTGAAGAG--TAGGAGTCAGGCCCACGA-CAGAGGGCCCAACAAAGACACCAACCGGTGAACGTGTTCTGAGGA-TGCTAGGTATTTCCCAAACGATTCCAGTTGTCTGGACAGTGAAGGAGGTTATGTTCATGAGCCAATCACAGGCAGCACTGAGCTAGGCTCTGGATACTTTGTGGGGCACgggggtgggggtggggtgggggtgggggCTTTCTTCTTTAATGTTGATTTTCAATCAGTGAAAGCATCCATG----TCTGCTAAGTATTTATGAGGAAAAACTTGAATAACTCACCACATGTAGTGTTAAGCTAATTATTTGGATTAACAGCCAGTGGCCTTATTTTCCAAGGGTGAGACTAACCTCTGGAACTATTAGCCCAGCTCAGACTCCTGCTGT----GTAGGAGACTCTGACATGGAAAGAAGGCCTCGACTTCCAGCCCCCCCCCCCCCACCCACCCAGCAGGTCCA---TCCTTCCCCTG--ACAGATAATGT--------GTGGGAGGTGAGGTAGGCCAAATCTGAACACAGTAGGATA--GCACAGCCATCTGAGCAAACAAGGTTGGT
s HiC_scaffold_1 112332073 812 - 233722169 GTGTAGTCTGTGGATGGGATCGAGTGTATTTCTGGTAAAGTCCCTCAGCCTATGGGGGGCCTAAAAAGGCAGACACGATCTGTGGACTAAGTGCACTAACTCCCCAGGGGTATCCATCCTTGTGTCCGCC---ATAATTCTCTGCAAGCCTGGGCAGGCAAGCCA----GCTCCCAGGCCCAGG-AGGGAGTGCTATGTCAGATAG--AGATCTCAGATGTCAGAAGGAAGATCCTGCCAAGCCTACAGTCAACCATTACACTTGGGCAGCCTTGTTATCAGTGAAAAGGATATGAGCCAAGCCAAGAAGAAGAGGGCCTATTGAAGGCACCAGTCAGTGCACATGGCCTGAGGGCTACTACGTGTTCCAGAAATGATTCCACTTGCCTGGGCAGTACACACGATGATACTCA-GGCCCAGTCAT-GGCAGAACCAGGCTAAGCTACCAATATCTTCTGGGATCCAGAAGT------------------------TTCTTCTTTACTGTTATTTCTTAATCTATAGCATCATCATCAgtaattcattaattatttatgAG-AAACACTTGAATAACACAACACACGTAGTGTTAAGCTAATTATTTGGACAAACACCAGGTGGCATCATTTTCCAAGGGTGAG-CCAGCCACTGGAGCTG-CGGCCCAGCTCAGACTCATCCAGCCTCAGGAGGAGAGGCCAGCGTGGAAGTCAGGTCAGGGCTTCTGGCCT---------------GCTAACAGATCTACTGTCTTTCCTGGGTCACAGATGGTCTCTATGGAAGCTGCAGGAGGGAGAGAGTAAGTCTGGACATAGGACGATATTGTTAGTCCATTTTAGCAATCATGGGTGAT

a score=26778
s chr3           102227991 675 + 160039680 TGAAAAAGGCCTCATTTGTGTGTGTGAACACCCCATATAAACCCATCACCTCTGTCTATGTCAACAGATGACTTTAGAAAAAGGGAATAATGGGAC-----AATGTGTACCATGCAGAGAGGACAAACACACAGCTTAGACCAGACAGTGAGAGTTGGCATATGTCCAGCCTGTGTCTTGGATAAGCGCATTCTGCTGAGATGATAA---TTTCCTCCCTTGATTGGTAGAGTAATTTATCACTGTGGATAGGTATCCAAATAAGTGTAGAAACCATGACAAAAAGATGCACGATTCTTTGCTTTAGGCAGTGTTATGTAGGCTCTGTTACAAGTCTTGAAATCATTAAGCCATCATGCTGTCTGGCATAGGCATTATTTATTTTCCTGTTTTCATGAtgttggaaatgagtaagatactttgctttaccatatttacaagattggtttattaatttacaaaagtacataattgctgaggataattttacttgctaaatctgacacaatgggagtttcaattgcctgggagaatctgacatgctaaatttgtgattgtagtttcatatgtctcaagaaatgtagttaaTTAAAAAGCAAGT-AGATGAACATTGA-AAGGGATTTCATCTGTTAAACTTAAGTTAGCTGAACACTGATCAAAGAACCAATAGAAAGATTTCTTAA
s HiC_scaffold_1 112355974 656 - 233722169 TGAAGGAGAGCTCATTAGCATGTGTGACCACCCCATGTAGGAACATCACCTCCAGCTGTGTCAACACTGTACTGTAGACAAAGTGGGTGGGGAGACAGGTAAGGAAGTCTTGTGAGAACAGTGTATAGACACATCTCAGACCAGTCAGTGAAAGTCAACAC-TTCCCAACTTGTGCCTTGAATAGGTTCATTCTGCTAAGATTGTGACTTTTCCCCcctttaattaagaggaaaatttatagcccTGGATAGGTTTATAGGTAAGTATAGGAAC----AAAAGAaggtg-----------------ggttgtcctatgtgagATATGAAACATGTCTTGAAATCATTAAATCATTACACTgt-----atttgatttgtttgtttttctgttttcaggaTGTTCAAATTGAGAAACAGAATTTGATTTACTACATTTATAAGgttgatttattaatttacaaaaatgaataattgctgagaa-aaatttgcttattaagtctgCCACGACAGGAGTTTCAATTGCCTGGGAGAGTCTGA-GTATTAAATATGTGATTGCAGTTTCAAATGTCTCAGAAAATACAATTCATTCAAAAATAAGTGAAGTAATCATTTACGAAGAACTTAATCTGTTAAATTTAAGTTGGTGGAACCTTTATCCAAGAGCtagtaaaaagaatttttaa

a score=10471
s chr3           102249064 930 + 160039680 gtagtacaAGG----CTTATGTAGACATTAGGGCTGAGATACTAAGATTAA-AATTCAGAAGTGGCTATGTTAACTTGTACATGTATTTC--------CAGATCAAATTCAGGAGATTTTCCCCCCTAAAGATAAAGGTGTAGAAAGAGTCACCATGTGTCTCAAAATCAGGTGAATTTTGTGCTGTGTCTCAGAACGGCTCACTTAGGAGAGTCAGTCCTTCAT--TTGTGGTCCTCACCATATGCTCCTGAGA---------------CCTGAAATGTTTTCTAGAAAAACACAttggagctttg--tgtagcttagtggaacagcacttgattagtgcgcacaaggccctaggcttgatctttagcactTGTATGTTTGAAGAACCACACACTTAGATTCCATACCAGGCAGTTAAATGCCCCATCCGAAGCTCAGCTCATTTCTAGCAAGCATTTCAAGCAATCTTCACACACAGACGGTTCTGTGACAG------CCATCAGGCCAAGCAGTG----------------GCACGTCTTCTACACCAGATGGCACCACAAACCCAGTCTAGAATTAGCTGTCCACT----CAGCTTTT--------------------TTTCTGCTTGCTTCT-CTTATTAGGGAAGAGAAAGTCGCAGCTAA--GCCCAAGGCACAGTCATTC-TGCTAACAGTCTGCTAGTGAAAGGCCTCCCCGGAAGAGGCTAAGGTTATTGGCACAGACAGGTGAGGACTATTCTCTTCTGAGTGAC--CACCTGGGACCACACTTTAGTCCAGCCCGCAGTTCGGGTGAGGAGTCCTATGAAACACTGAAGAC-----------TCAGTCAGAGGCAGACTTGTGCAGAGCACAGAGAGAC-TGCACCCTTCCAAACCACTGTCCCTCCTGGTCA--GTGTTCACTTCTCCCCATCAGAGCCAGGTACAAGTATGTTGACGCTCCATCCCCGCA---GAGCCAGGTATCCCTGTATCCTCTTCCCCAGAAGCAACCCCTCT
s HiC_scaffold_1 112375751 928 - 233722169 GTAACACAAGATACACATATTTAGGTGTAAGTTAAGAGGTGTTGAGATTAAGAACACAGAGGCAGTCATACTAATCTATTTCTGGAATCCAAACACACCAGataaaatttaggaaattttGCC---------TGAAGATGCAGA-----TCAGCATGGCTCTCAAAACCAAG-------------------CACAATAGAACACTTAGGAGACTGAATCTTACATGACAGTGATTCTCAAAGTATGATCCAGAGATTTGTCTCATAAGCACCTGAAATGCTGGTAAGAAAAACACATT----CTTGGATTCCACCccaa---------actaaatta--------aaatctctGGTCTCGAGACTAGAAAAACTCATTTTTGA-----CAAGTGTTTCAGGTGTACACCAAAGTCTGAGA----------AAAGATAAATTCATTGTTATCAAGTATTCCAGG-----TGCacaccaaaa----tctgagaaaaaatatacagtaaggcTAAGGGCTGTCTGAATGGGGTGCAGGTGGGCCTTTGTCACTAGATGTCGCCACA--CACATTCTAG------TTCTCCACTTTGGCAAATTTTCGGCATAATAGGAAAAAAACTTTCAGCCAGCctccacacaggaaaggaaagacaataGTAGCAGGCTGACTAAAATGTGGCCACTGGCACTATCAGTCACCCTGAGGAAGGTCATTCCGGAAGAGGCTAAGGTTACTGCAGAGAGCAGGTGAGGATAATCCTCTGCTGAATGCCTTCACTTG------CACTTTGATCCAACAAGCAATAGTGGGAAGCAATGGTGTGGATTTCCCAAGACCTAGAGGCAGTTCTGCAAGAGGCAGAGCTGTGGGGAACCCAgggattctttttcctttccaggtGGCCCACCCTTCTGGTTAGGGTATTCACCTGTCCCCTTAAGGGTTAGGCAC----------CCGTCACTTCCCCTAATATGAAGCAGAT-TCCCCATCCCCTTTTCTTCAAAAGCAATTTCTCT

a score=12506
s chr3           102250869  934 + 160039680 tcAGCCCTTAGGTCTTAATGCACTGCTATCCAA--GTCTTACCTTTTAGCCCAGCATTAATAACTCTCAC-------TTCTATGGCTTAATGTCTGTACTGCTGACATTATTCCTGGAAGA-------------AAAGATGTCTGGAACTCCTCAGGTTGATGGAAAGGACAGGGAGTGAAGAAGACAGGGTGTCACAAGCTG------------------GGGAGCGCAGGGAGCATGAACCC-ATGGGA--GACAAGGGTCACCTAAGCATGTTGACTGTG--GAGTTGCATCGGA------GGATAGGAGAGTGGACAAGATCAGGGAAACCAATGGGTAATGATTCCTGGTGATGTTAGTAACAGAGAAGA----GACAATTACTGTCAGTCTTGGGACgctttctgttgtcataacaaaataccagggggtgggtactttgttttaaaaagaggcttctctatctcacagttttggagattcaagatgttagtgccagcatct-ctggcttctggt----------------------------tccatcagtgccttatagcagaagtgtttgaaaggg-----------------------------------------ttgatcacACAGTGTGGGGAGGGGAT--------GCTCTGA--------ACTTGCTTTATAACATCC-----TGATGAGACTGAAT----CTACTCCTTCATTCTAGCGTTAATTCCCG-----------------GGGGTACCTCA----TAAAGATTCCCCCGTCTCTCACTATTACCACACC-CGGACCAAGCCTCTAGTTCATAGACATTTAGAGGACGTTCTCCAGCCACAGTCACATTAGAGCTGACTCTCCAGGACAAAGGTGAAGTGAGGTGAAGTGCCTAGCAGGTGTGCGTGTTGGGAAGGCCACAGCTGTAAGAGAGCACAGGGCCTGGCCGGAAGCAGGCAGGAAGACCTTCCATGGCTTCTTCTTTC-CTCTGCTTCTGACCATGACTGCTTTCTGCT-GTCTCGCCTAGAGCCTCTGGAAAACCAGAGA---------CCCCCGATG-------AGCTTCAGGCAGAGAGCTGGGCAGAAATAA
s HiC_scaffold_1 112376881 1084 - 233722169 TCAGTGGTTAAAGCTGAAAGCACAGCTGTTCAAAAGTATCACCCCTTAACCTGGCATTAAGGATGATCACATTCCAATCCTTTGGTATAAAAGACTGACAGGTTCCTCTACTGGTGGAAGAGCACAGACATGAAAAGGAGACCTGGGTTCCACTGAGTCtctagagaaggaaggaaggaaggaa-------tatcACAAACTGAGGAAAGTGAGTGAACTGGGGAGTGTATCAGGCAGGACCCCcatggaaaagaaaagggatGCCCAAATGGGGTGACTAAAAAGAGTTTCATGAAAAAACAGGGATAAGAGAATAAGCAAGATCAGAAAAACCAAGAAGTAATGATTTACAGTTCTGTTAACAATAGGGGAGAAGAGAATAATCACCCTCTCTCTTG----ACTTTCTGTTGCTATATCAAAA-ATTGGGGGCTGGGTACTTTGCACAGAAAAGAGTCTTCTTTAGCTTGCAGTTTTGGAGGACTaagagcatggtactggcacCTACTTAGCTCTGATGAGGGTCTCCAAGCCATATCACAACACATCAGATAGTGTCTTGGGAgagaagtgagagagagagagagagagagagagagagagagagagagagagagagagatatcgaTCTCATAGAGAGATGATAGCATGAAAGTAAGAGCTGAGACAGCTGGCTTGCACTATAGCAACCCATTTTCATAAGAATGAAGACTAACATTAATCCCTTTCAGTGTGGAGTCCCGTTACCTAATTGCCTATCGGTAGGCCTCAACTCTTAAAAGTTCCACATCTTTCAACATTGCCACACTGGGGACTAAGCTTCTAGGACATGGATCTTTGGGGCATACACTCAAACAATACCTTCAGTGTAGCATAGTCCTATGGATGAAGGCCGAGAGGAATAAGAAGTC-------ATTGGGTTCTGAGGAGGGAAC-----CAAGAAAGTAAATGATCCCATC--------------ATGCCTTCCCTGACCTCTGCTTTCTCTCAACAttcttctctga--gtttgctgTTGGGGTCTCCCAAACCCAGTGAAAACCCAGAGGACAGGTGACCCATTGATGCCAGCATAAATTTAGGCAGAAAGCTGGGCAGAAAAAA

a score=28519
s chr3           102261436 1666 + 160039680 ACAGTGCTGCAGATGATCACACCAGGG--CTGCCAACACTCACATTTCCTGGTT-AGTTTCTTGTCATTAGCTTTGGGCTCCAGCTTGTAACCTGTGGTGGCTGCAGGAATATCAGTAAATTCCACACAGGCAGGCATCAGCTCGGTAAGACTGGGCTATGGAGGTTTGCCTTAGATCATCTGTGGTCACAGAAGGAAGATAGTCCT--CTTTCTTATAAACGAAGGCTGTGTGGttaaag----gttcagctgcaggctgagctattggtgcagcctc------------------agcgggctgcagccatgtcagtggtccagtgccaggacagcagagctgcccagtcaggccacagacacaggaaagtaatgaatcattatgttgggtgattaagctttggagcagattgttgcatagcaaagataaTAAATTGTATTGCACAAATGGAAATATAGAGATGTATAAAAAAGTGAAGCA----------CATCTATTTGTTCATTAATAAACAAAT---TTTCAAGGACTGGTAAATGCATATTATCTAGTCTACTCTCAGAGATGCCTCTGCAGAAGAATGCATTGACCCTTTGTG-------------------------GCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGAGAGTCTAGAGCCTGTAATGAG-GAAGGAAGTCTCCAATTAGGACAATGGTCTACAAAGAATGATTTCAAAGTTAGGAAAAACTAGAGCTG-CCTTCACTTCT--CAGTCAAGGTCTGTAATGCAAGTCGACCCTTTACCTC--GGAAAAGAATAACCCTGTGCGTGTTGGGGTTCCAGAGAGAATCATCTCCCCTTTGCTGGACTTCACGGCAACTTTCTGTCCAGTGAAGTCAGTTTTCTGTACAGTGGCTTCTGCCCAAATGGTCTGTATTTATCAGA---TGATGTATTCATGTATCGCTTTCCAGCCTACAAAGCGC-----TCTTTGTTTTGCAAA--TCTCTCTTGTGCATTATCTCATCCAGGCTTGTCACAAGGTAGAACGGTTATTTGTCCCAAATTTACTGGT-CAGATATACTCACGGAGGGCTGCTGTCACCTGTCATCACTGCTGGACAGATGATTTCAA-CACAGACATTACAAGTGGTCCAGCCTCTTCATAAGCCTGCACTAAAGACACTG-------AAGCTTGTGATCACCCGTGTCAGGACAAGGAATGGCATCTCCCTAACAGGACTCAAGAGCCTTTGCCATTAT--CTGTGGTATTAAGCAGGTTTCAATTAGGATTTTAGGTGGATTTTTTTCTTTGTTCCGCAGAAGTTTTAATCAAGGCAGAAAAACTCTGACGCCT--CATTCTCCTCACAACAGTCAGTCACCAAAGCGTTGCATTTTTCT--TCCTGAAGCTTCCCCTCCCTCGGGCACATTTTTAGCAAAAAAGATGAGATCCCAAGCTCTCCAGATGTTGCCTCTCAGATGTGCCTCAGCACGCATCTCAGAGCCATCTGGCCGCAGCAACAGCTGGACTGCTTCCAAGTGGAAGTGCTCA--CAGGTAAGGGGGTGTGAGGGGAAGAATGTGGGCTCCTTAGTACGTTGTCAGCTAAGCCGGTGATGCTGTTTGACCAGCTGTTGACATGAGCTCTCAGTG---AAGGC-GGCTTTCAGAATCCTGCAGTCAGGTTTCCTGTCTGGGTGCCT--GAGGGTTATTGTCCA-----GGGGCATGCTCTGCAG----------------ACTTGGACCCTGTGTGGTAATTCTGAGGTGTTGGAAACCTTAAGAGGTG
s HiC_scaffold_1 112411399 1883 - 233722169 ACAATGTTGTGGATTGTTGTACCTGTGATCTGCAAAGAA-CAAACCTCCTGGTTTAGTTTCCTGTCATTGACTCTGGAGGTGACTGTATAACCTGTA-CAGCCAAGGGGATAC-----AATTTGACATGAGCAG-------CACGGTA------------GGCATTTTGTTGGCACCCAGCTGCcagcaaggaaggaaaa-aatccTAGTCTTCTCAGAATGGAAGACCATATGGGGAAAGAGAGGCCCAGCTGTCAACAGAGCGATCAGTGAAGTTACCAGCTGATCTGAGAATTGAACAGAATG-AGCCTGGTAAGTGATCTCAAGCAAAACCAGTAGAAACACTAATCCTGTGCACAGAATCATGAGAGTAATAAATCAGTATTCTATGCCAgtaagttttggggttttttgttatGCAGGAATGGCATT---------TATATAGTTTGAAACATTGCAGTATATAAATAAGTGTAATGGGCcattcatcattcattcattcactgataagtatatatttttctaagacctataaatttatattatttattctactctcagaactcactttgtataagaattcatgaattttttgtgtgtggtactggaaattaaatccagggcttttgcacttaGCTACATCCCATTCTCCcacccccttttaaaaaaaaaaaggttttgagactgtgtctcactaagtcactaattgCCTGGGTTGGTCCCAAACTTGTGACCCTAATACTTTAGACtccaagaatgctgggattataagtatgcatACCACTCCCAGCTAAAAATTCATTAATCTTTTTTAATAACTCTGGCCCCAGAAAGTCTGAATCCAAAAGGTAGTGAAGGAAGTCTCAAATTAGACTAATATTCTC-----GATAATTTCAAAGTTGGAAAACAATAGAGTGATCCTTCATCTCCAACACTCA-GATCTATATTGCAAACTTACCTCTTATCTCTAGTGATTTGACAACTA-GTGTGAGTTGTATTTTGTG---------------CTTTCCTGACCT----AGTCACTTT-------GCCATGACTATTGTTTGTATAGTGAATTGTGGCCAACCAGTCTGTCTTTTACAGGAACTAATGCATTAATGTGGCCCTCTACAGTTTATacaatacagtttttttttttttgcaaaattctttcaagttcAT-----CACTCAAACATGCAACCATCCAGAGAGGTTATTTGCTTCAGGTTCCTTAGAACAAACATGCCTGTACAGGGTCAGTG----CTGTCACCACTTCAGGTTAGATGATTTTGAGCTCAGACCTTATAAATGGTGGggcattttcatacatttttattaaagaagATGCCTTCATAATCTT-----CAACCTCACAAAGATGAAGAATAATGTCTTCATAACACACTTTGAAAGGTGCTCCCTCTATAGCTGCAGAATTAGTATGTATTCAATTAGAATTCCTGTT----TTGTTCCTTTG-------GAAGTTTTAATTAAGACAGAAAAGCTTCAACATCTACCATCCTCC--ACAATAACCATT----AAAGGtttgggtttttctctttttgaggccCCTCTTCCCCCAGGGATATTTT-AGCAAAAGGAATGCGACTCCAAGATTTCCAGATGTTACTTCTCAGATGTGTCTCGACATGCATCTATAAACCATCTGGTAGCAGCAACA-CTGGATTGGGTCCAAACACAAATGTTCATGCAGGTAAAGCAGTCCTAATATAAGAATTTTAACTGATCAGTGCTTTGTCAACTAAGTTTGTGACACTGTTTGATCAGCTGCTGAAATAAGCTCTCAGTAACCAAGACAagcttttagaattctgcagtccATTT-----TCTGCATGCTTAAGAGAGCTATGGTTTAGATATGGGGTGTTCTTTGGAGGTCCATATGCTGGATTATTGATACCCAGTATGGTAGTATTCAGGCGATAGAACCTTTCAGAGGTG

a score=35630
s chr3           102266070 2469 + 160039680 tcaaagACCTTTCCAGTGCCCTTTCCT-GCCAATCGGGCTCAAAGCCCTCAGGCCAGAGCTATAAATTTAAGGAGGGAGC------------------------ATGAAGTCATGGGGACCCGGCCTGGGCCTGTTGGAGTTTATTTGGGGTGTGATATCTTGTGAAAATTGCCCCTCAGGCCTAACTAGAGGACCGTGTTGTTCCCTGGCTCCTTCACAGCATCCCTGAGCTCACAGGCTTGCTAAGG----------------CGGAAGACTCCCTGCCTATCCACCGAGCCAGCATGCACCCACTGGGACCTCTCCGGTTGCACCAAGGGAGTCCTGTTTTGTGATTTGCAGAAGCAGTTTGGAAATCCATCTGCAGTCAGGAATCAGGTTCTCCTGGAAGAGGGATTTCTGAATCAGAGCAGA-AGCAGACACCCGACCACATCAAGGGAGAA--------CCGGGCAGACGCTGAGTTGCTGCGTTTGAGAATGGCTACTGATTAGCCAACCGCAGGGTGGGACAGGCCGCTGGGCTTCTTGGTTAGGGCAGAGGAACGTGAGGATGAAGGTTGAGGGCTGAAAGGAGCAGGG------------AAGGATCTGTGAACATCTGGGGATGCTTAATCAGGAGGAAATGGGGATCCCACACACAGTAGCACTTTTATGAGCTCTGATTACACTCTGGAGAAGACGGAAAAATAACAGAAGGTAACGCCCTGGTAACTAATAACCTTCT---GATGGTGAACCGTGCCACTTTCTCGAATCTTCCCCTTCC------------------ACAGATCATGACGCTAGGCATATG--------------GAAGCGGCTAGAAGGGAGCCGAGCA----------------GGTGTCTCTGTATCGATGGCT---TCTTAGTCACAGAAGATGAAGG---TCTGGGA--ACATGGGAGA--------AATATGACTCCAACCAGAACTTGAATTGTGAGGATAGGGTAGGGGAGGAGGTGAGATTTGAGGAGGAAGGGAGCAAGTCTCGTCTCCCTTCCTTATTCTTCCATTCACTcagtgttaaaaactagtgctctggactgaggtgcctctgggctcaaatc-aagctttgtcacttgagagccctgtgaatcctgagaattgtttgttgtctattggcttctgtttcttcatgtgATCACGTGATGAAAGAGATGC----ATGGTATAGAAAT-TTGTGTGTGTACACACACATG---------CGCAGCTCT-GTGTTATATGCATGTTTGTGTGCAtgcatgtgtg------tgtgtgtatacatgccagaagttacgccttcaggtatttttttctccacccttgtgaagacaggatctctcaccaagcctagagttcattgttttggctagactggctgccagcaagccctgggaaagcactcacccctgctccacccctcgaaacccctaggctccggggttacagacattcaccatcacccttgtcttttgcgtggttacaaagatttgaactcaggtct-ttagccttgtgcagcagatactctgctcactgaatcaatcccccagGTCCACCATAAATATTCTGAGAAATAAGTGCCCAGTCCAGTAATATAACAGTTCACTGGGCCTGACGAGTGATGGTTGATCACTCAACACCACCTATCGTTGAGTCTTTCAATAAACGTGTCCTGGGCACTTGCT-TGAGGGTCCAGAGGTGGTGGGTTTAGAAAAACATAATTTCACTCCATACTTGTGAAATGAGGCACTTTCCCAACTACATCTCCCTTTTTATTTCCTTCCTTCTCAGTTTCCCATTGACAGAGTGTGGAACACATGCGAAACAGAGAGGGAGGCCGTTGGGC--GGAGAGGAGATAATGCAGTCTGTGTACTCGAGAATTCTCTCTGCCTGGTTCACAATAGACACTTGATAGTGGAATCAATAATTACTTCCAGGGGCCAAACACTCAGGAAAATGGAACCTTTATTTTTATTTTTCTGGTGTTTTGATTAAAAGAGAGTCACTCATTTGAAATTCCACggctgcgagctggtggtccaaggataaggtctgccccagccacgtgttttatttggcctgcacagtatgttaaaaattagaaaatt--------aactccatgttgtttctggcttcctttgaa-----aacagatctagctgtcctgggctgcctttctccacggtagcaggcagagggagccaagcagAGATGGGAGCTCTAGGAGATTTTCCCACTGATGCCCCTAGG---CACCCCAGTCCT--------GGGCAGCCTCTTCTCAGAC---TGCCAAGGAGCCACCATTGCAACTGATGGCCTC----GTCCTGTGAGGT--------GAGTGGAGGTGAGGCCACTGGGGCCAGAAGGACC--AGCGTTGCT--CCTAGAGCAT---CCTCTTCACTGTTGTCT---------AGGGCAACTGACCGACACTTCACTTTCTGCCCAGATACAATGGCCTGGTGTCGGTGCCACCAAGATCAGCCTTTCTTTCT-GCCACCAACCCTTCCA---------AGGAGAGTGACTGGGTG--------TGT--------AAAAGAGGGCAGCTTCCCTCTGGTTAGGAAACCACAAGATGGAACCTAAGTGTGAATTCTTCACATACTTCT
s HiC_scaffold_1 112419016 2370 - 233722169 TCTAAAACTCTTAAAATGTTCTTTCCTAGGTAATAAGTGCCAAAGCCCTCAAACCAGAGCCATAAGCCTGCAAAAGGAACTGGTAACTTGGGTGGATTTGGGGAGGGATGCAAAGAGGTTTCTGTCTAGGTCTTCTGAGCCTTCCTTTGGGTTTCATGTTTTGCAAAACTGGAACTTTGAACCTGTCTGGAGGATCACAGTGTTTCCTCGTACT-----AGCTTC--TGAAATTGTGGGTTtgctgaatgattttttttttttttttaatgaatccCTGTCTAGCTATGAGATCAGCATGTGCCACATAGGGCTTCTATGATTGCACCCAGGGAGT----------GATTTTTCAGAGCAGGAAGGAAATCCATCTACATGTGGGCATCAGTTTCTCATGAAGGAGGAATCTC--AATCAGAGCAGACAGCAGACACCCGACCACATCAAGGCGGAGACAGACTTTCAGGCAGATGTCAGGTTGCAGCTTTGGGGAGTG---ACTGATTAGCCAACCACAGGGTGGGACATGCCT---GGCTCCTCAGCTGAGGCAGAGAACAGTGAGGCTGAAAGGTGAA---TGAAGCCGGCAGGAGGCCTGAAGTGTAAGTATCTAGGAACATCTGGGGACACTTAATTCAGAGGAAATGTAGACCTCCCACACGGTAGCACTTTTATGAGCTCTGATTATACACTAGGgtacagagaaaaataacagaaatgatcACACTGGTAAATAAAAACCCTTCCTGGCCCATAAAACATGCTGCTTTCTTGAATCTTTCCCCTTTCTACAACGTGTTTGAAAGGCAAATGATGAGG--AGGCAAATGATGAGGTCCTTGTCAGTGTGGCAAGGACCGAGCGAAGCACAAGCTGGCCCACTGGGAGGCCCCAGGACAGATGGCGGCACCTGAGCCACAAGAGGAACAGTGGCTCTAAGACTGCATGGGAAATGTACAACAATGTACCTCTGGTCTGTCCTGGAACATGAAAGATG-----------------------AAGGAGAGCGGGAACAAGCCTTGGCtc----gctcattcattcattc---tggtGTTAAAGAC--GTGC-----ACTATGGCACATTTGACTTCACGTCTCAGTCCCGCTGCTTGAGAGCTTCATGGACTTGAGCAGATACTTAGTCTTTTTAGGCC-----------------TCATGTGTTAAAAGGGAAGCCTCTGTGTTATAGAAATATTATGAGGAACAAAATGCATGGACCAGAAATACAATTCTAATATCACAGAAActctt---tcaataaatatgtagTAAGTTCTGTGCTTGCGGTTCAGAGATGGTGCATTCAG-------------------------GGCAGAAT---------------GTGATCGTTGCTTG---TAGAATG---------AGACACTTGCACAACTTTTATTCCAGtcctgttttctttcccctctat------------------ttctctctca-------ttttcccATGG--ACAGA-----GTACTCAAGTGTGTCTAACTTGTG--GCCAATGGGCAGTtcac------------------cctcttttttttttttaaagaaaaa-------------taatataaaaatacatt--------caagGGAAAATTT---------TGCTACTTAT------ATACCTCAACTA---TGTCAT--ATATTTCTTATGAGGATC----------------AAAGCAATTTCTCTTCACTCAATGCACCTCAAGTGA------TTCAAAA---------------------------GGTTAGATACTCATGGATAGA-------------ACAAGAGAGAAAGGGAGTCCTGTGGGCAAGAAGAGAGGATAA---------AATACACTAGAA-TCTCTGTCCCTGGCTTACAGTAGGCCCTGGAGAAGGGAACTGATAATTGTCTCCAGGAACCAAACACtgaggaaaatggaaattttatttcaattttcttattgttttttatcAAATAGAATCATTCA---GGAAT--------TGCAAAGTGGTGATCAATGGATTA-GTCTGATCTAGCAA--TGTTTTGTTTGGTctacatagtattttaaaaattgaaaaatttcttATTAAAACCTG---TGTTTTTGGCTTCTGGTGAAAGATGAGAAAATCTGGCAATCCTAAACCCAAATTCCTCATGATAACAGCCAGAAGGAGCTGGCCCTATACGA------TAGGATTTTCTCTC-CTTGTGCTCCCAGGTGCCACCCCCCTCCCCAAATATAGTATAGTCTTTTCTCACACTTGTTCCAAGGAAGCTCTGATTTCACTGATTGTCTCACCTGCCCTGTGAGGCAGTCATAGGAGAGGAAAGTAGACTCCTGATGC-----GGCCCAAAACCTTGCTCACTCCAAGCCTTGGCTCCTTCCCTG-TGTCTTTTGCCAGGGGGGCAACTGGCAGATACTTCACTCTCCATCTAGAT-CTTTGGCCCTGTGTCAGTGCCAAAACCTCCAGCCTTCTATTATAATTACTCTCCTTCCCATCCGGCAACAAAAAAGTGATTGAATGACAATTATTGTGGCATCTGATATAAGGGCAGTTTCCCTCTGGTTAGGCAACCACAGGACAGGACAGTACTGCAGATTATTTACATACCTCT

a score=15662
s chr3           102275202 345 + 160039680 AAGAAAATAGGACGCCTGCTTGCTGCCCAGATTAAAAACTCTTATTCAGCTTTCTGACGACACATGTTGAAATCTCCACTCTCTCCTAAGGTTTGACATTGCTTCAGCGCAACATGGGGCCAGGT-TTGCTCCCTCTGGAGACTTGGATAAACCCTCAAGTTCCTTAGGTGAACAAATGGCCGCATTTGCTTCCCACTAGATGACTCCCAGCTGCTTGCGTGCCCTGCTTCTCACCTCCTGGCCTGCAGCTGGAGTGTCCAC-------------------------TCTGTAAGCCTCACCCTTGGCAGCTCTCCCAAGAAGACTAACAC-TGACACTGGAATTTAAGTGGAAAAAAAATCACAGGAGATG
s HiC_scaffold_1 112428405 365 - 233722169 aaaacagaaggagGCCTTCTTGCCAACCTAAC--AAAgatctttttcagttttctgatcACACATGTTGAAATCTTCGTTCTCTCATAATAGTTGAAATTGTTTCAGCACATTATGGGGCTAAGCATCATTCCCTCTGGAGacttagataaacagtgaagttCCTTCGGTGAACAAATCGTCAGATTTGCTTCCTACCAGATGGTTTCCAA-TGCCCAGATGTCATTCCTCCCACCTTCTGGCCTGCAGCTGGAGTGTCCACTTTTACAGCCAATTTTGTCTCGTCTTTTATGAACCACACCCTTGGCAATTCTCCCAAGAAAAGTGAAACTTGCTAatggaatttaaatt----aaaaatcatgagAAGTG

a score=26821
s chr3           102278205 1770 + 160039680 AAATAGCTTCTTCTGATAAACCCAAGAG----GACCTAActttatctcttcatg----------------actggcaaataagaagcactcattaagtgttt-ttaagtgaatcaatAAAGTCATGATAAAAAGAATAGGGTGGAGAGAAGTTGAGTCCAGCCAGAGTGACACCAGTCTGTATAATGACCTAATGCCTTAAAGTCCATCAGAGGCTTTGTGGATGGCTGCCATGAAGCAATAGCTCTCAGAGTTAAGGGTTCATGAGCAGCAA-GAATCCTTCTTACAT-CTTGCAGGTCCTTAATCACAATATGGTAGCTCTTGCTTTTGCGCCTCGCATACACGGAATGGCCATTTGGAGAAGGTAGCG--TTTCGCTCCGTATAAAAGCAAGTTGGCATTTTTTTTAAAGAATAAAATACAGTCCAGACTATTAGTTTCCTCTGCATGATGA-TAGCTATTGCTT-AGAACACTGAAGAGAGAAACTTCTTAaa--ctgggcatggtgaagcgtccccttaatcccagcacaaaggcaggggcagaggcaggggcaggggcgggggcaggggcagaggcaggggcaggggcgggggcaggggcagaatgacctccataagttcaaggctacttggtctacacaatgaattacaggttagtgaaggctacactttgagacctcatatttaaaaaTAATGTACTTTCTTGCTTCCCACAAAATTCTTCTCTCCAGAACA-ACCATGCGTCAGGCACTGGCTATACGGACTGAGAAGCTGAAAACTGATCAGAGTCAAGCTGAGCCTATTGACCGCTTTCCATGTCCACAGAGATAAACACGAACAAACCTAAGATAAAACCC----CACTGAGTGCACTTCCCTGGGACCATTTCGAGAGCTTCCGACCTCTGGGAACACATATG-TGAGCCAGCAGGATGGCCACATCACCCACAGGGCAGTGTAGAGGTGGATGCCAA-ACGCAGAGAAACTGAGTCATAAATG--------------CCTGTAACTCTTCCTGTGGGTGT--GAGGATCCTATCTCTCAACCCAGCTTGAATGGGATTTGTT--TCTGCAACTGGAATAATCTTAAATTATCCATTCTGACACCAGAGACTCAGCACTTTCAGGTAAGGTCAATGCTATTCTTGGTATAAAA-GAGGATTTTATTGCATTTGCATGCGTTGTCATTGTTTCCATGCAGTCGCTAGCATCCAGCTGCCCAGGCAAACTGCTTCCTATGCAATTAAACTGCTTTTGATACCAAACACAAGCAGCTTGTTTTAGAAATGCAGGTTTATTTGTTTGTTGTGAAAGATGGGGCTTTATTGCTTATG-GGCCGCAGTCTTTTACTTTTGATGGTTCGGAAATTTGCTTTAAAGCTTTCAGATGACCCTATGCTGTCTGCTTTACTGTACTTTTAGAA--GTGTCAATCAAAGCAGTCTGGTTTTGGTTTT-------TATTTTGTT----------------GTTGTTGATTTTCTTTTTACTTCTTCA-----------TTTTTTTCAAT-------------GTTTTGTCCTTCCT--CGACTTCTGCAG--CTGG-------TTCTGTCTCATATCAGCCAAAGGACAAAGAAAAACCCAAAGTGGTAAAATAAATTATGCCCAGGTGAACGACATGAAGCTTTTTTACCAAACTTTGCAAAGCTGATCTGAGCAGTTGACTACTGAAGCTACCTGCAAAGCTATTCAGTTCTAACCTGGATAATGAACGCATTCTTTTCACCCCAAGGATGGTGGACAATAGTTCTCTGCTTTTTATTTCACAGCCCAGTGCTGAACACTAGTGCAACTAATTCAGGAGACGGTGCTACATtca
s HiC_scaffold_1 112429157 1603 - 233722169 AGATGTTCCCTTTTGATATTCCCATGAGACAGGAACCATGTTTATGTCTACATATCTTTTATATCTACAAACTACCACATAGGAGGTATTCATTAGGTATTTGCTGAGTGAATcaagaaagcaatgctcaaagggATGGAGTGGAGA-----TGACTCCAACCAGAGCACAACTAAAGTATGTAACAGACTAAT----CAGTATGAACTGAAGGCTTAGTGGATGGTTTCCAGGAAATAAAGGC------AGGCATGTATTCATAATCAGCAGTGAGTTCTCTTTCTGTATTTGTATGTCCTTAGATACAGTTTGGTAGCTCTTAATTTTGTCCAtagaatacatagaaaaataacttgaaa----tagTGACTTTGTTTTAACATAAAAGCAGTTTGGTGTGTTTtatgaataa-aaaggaaattccAAATTATTAGTTGTCCCTGTATGGTGAATATCTATTTTTTCAAAATGCCTACAAGAACACCTTCATACCTTCTggacat---------tttccttctcttcagaA--AAAGCA-----------------------------------------------AGTAGTTTGGGTAGGG----------------------------------------------------------------------------------------------------Tttgctgttttcc--------------tttagaacacACCATGTGGC---CACAG--TACTTGGTTTCTGAAGTATCCACCTGAGCTGAATCAATCACATCACACT--TCTTCTCTGGTGTTGAT-----------TGTTCAGACATAAGATTAAACATGGGTCAATGAG--CCCTTCTCTGGGAGT-TCTGGTGAGCT-CAGATCTCTACATACACACATGGCAAGCCTGTGAGATAATCACACCACCCACAGTGCAG---GGAGAGGGATGCCCATGTGCAGAG----TCAATCAGAGGTGGCTAGAGGAGCATCCATGGAGCCCTTCCTGGGGGTGTATGAAGGTTACTTCTGCCAAGGAAGTTTGCATAGGTTTTTGTCATCTGCAA-----------GTAGTTCATTCAGCTTGATGCTCCAGACTCAGCACTTTCAGGTGAGGTCAGTGCTATT-TTGGTATAAAATgatggttttatttcatttatatgtatTATCATTGTCATTATGCAGTCAGTAGAAACCAGCTGCTGAAATAAGTATTGCCGCATGTAATTAAACTCCTTTTGAAAGCAACCACAAGTGACTTATTTTTG-AATtcaggtttgtttatttgttttgaaaaatacagCTTTATTTCCTATGCCATTGCAATATCTTA-TTTTGATGGTTCAgaatttcactttgaaa-tttaaaatgac-----acTGTCTACCATAATATACTTCCTAGATTATATCAATCAAATC---CTGATCTTTGTTTTTTATCCATCTTTTGTTCTTAGGAACCTCTGCAGCTGGTTGCTTCAGCTTAGCTCGTTTATAAAGaatatcttcttttaaattaaaataaactgaGCTGCTTCCATCCTCACAGATTCTTTAGGACTGAGCCacatttctgtttaatttcatcCAAAAGCCTAGGGAAAACCACAGACAGTGAAATAAACAATATCTATGTAAACAATGTGAAATTTTTGTTTGCA----TGCAAGATTGGT-------------------------ATGTAAGCTCATTCAGTCTTAGGCTGAATAATGAAAATCTACTTTGTA--GCAAGGAAGGTGATGAATAGTCTGCTACTTTTAATTGTATAGCCCACTGCAAAGGATT-GTGCA--CAATTTAAGA-----TGCCACATCCA

a score=18885
s chr3           102293022 1155 + 160039680 aaaataaaatgtttttaaaagaaaaaGCAGGTTTTACTTCCAAAGAATGTATTCACAACAAAGAGCTGTATATTAATTAATGAGGAAGGAGCAGAATGTAACTTTTTTTTTCAAAGAATCTAGCATGTGCATAGATATTTATAGCTACAGAAAATAGTAATACTGAACTAAG-TAACAAAATTAA----TTAGTGACCC----AG---------TATAACCTTTGAGAAGAATCTTTCCT-TGTG---AAATATTGTTTCTTTATATGAAACAAAA-ATATTTGCATTGTAGTCCAATAAGAATAAG--------------------------AATTTATAAAATCTAATCAGTAGGAAACAGTGATTCTAACACTTATATATGCCTCCAGAAGATGAGCTCATTCTTGGGTGGACCTTAGGGTTACTGTTCCAAGCTGACACCCACAAGGCATGTGATCATTCTGATTTCGACTTCCAAGTTGTTGGTCTTTTTCCCCTAATGCTATAAC----AAACAAATGGTTTCAAGCACCAGTGCACAGAAATCAA-TGTCATTTC--ACTGTTCAGAGGACTCTTAGATTCTTTCTGTCTTCACCCTGATAACCAGGTTATGTTGGTTAACTTCATGTTACCCACCTGTccaatt------------tcaggcaaatatgaatctaggtgcttctggaaaggtcctccgtgtac-tgcttaatctctccagccaatagacatcaacagtctaaacaacgggaaagtct------------------------------------------------------cgaggtcc-------------------------cgagagcagaactgaaattcgtcggaggaagaggtaaatctaccttaaggcaccacagcagctccagctgcagt-------gctgcactctgctggcctgcccagaagacttcagacttcccggctccct----------------caggcacatatgc-------------------caattcccagaaagaaatctccaaagaccctcac-------------------------------------------------tctcttaactagctctattgctctctagagagccgtgactaatGTACTGTCCTTG-GGAATACTCTACCCCTCCT--TCCCGCCAGC-------CCGCTGCTTCCCGTGGTACAGTCTTCATGCTG---------------------GGCACCCCATCACTTCAGTAACCCAAAGTTAAGAGTGTCTCCAACTTTAATATGTGCTCTGGGGA-AAGAGAG-----------GCTCATAGAGCAGGGCAGGCCAGGGGTTCC--TAGATATCAGT------------------TCTCAATGATTG--------TTGCTCTCAA----CACAATCCT-------------TTCTTCCATTCTTTTTTTTTT
s HiC_scaffold_1 112434174 1449 - 233722169 AAAATACGAT-TTTTGAATGCCAGAAGCAGGCCTCTTATATGTAGAATGTG--CATGCCAAAGACCTGTGTACTCATTAGAGAG-AAGCAGCAAAACATAAAATCCTTTGC---AGAGTCTAGTAGAGACA--AATATTTATAGTCACAGAAAGTAGCAATGCTAACATAAGATTGCTAAATTAAGTGATCAGTAATCCTCAGAGCAAAAAACCTATAGCCTTTGAGAATTATCTGTTCTATGggcagaaataatttttatttccaatgGACAATGTACGTTTGCTTTGCAGTCAGATGAGAATCATTTTCAATAAATTAGCATTCACCCTTCAATTAGAAAAATCTAatctgtagtaaagagtgagtcAGGCCTTCTCATGTGTCTCCAGCAGATGAGCTAATTCTCGGGTGGATCTCCTAGGTGGTGTTCCATGATGA----CACAGGACATGCAGTCATCCCGCTGCCTATTTCCAAGTTGTGGATCTTTTTTCCTTAACACTCTAACTGATAAACAAATGGTCTCAAGCTCCAAAGTGCAAAAGTCAAGTTTTATTCCCAATTTTTCAGAAG--TCTTAGTTTCTTCCGGTCATCATTTTGATTTCCTGCCTGTGCTGATTAGCTTTA-GGTGTCAACCTGGCTAGACTATAACACCCAGTAAGTTAAACAGAAATCTAAGTGCTGTTGTGAAGTTATTGTATGGATGTGGCTAACATCTACCACCAATTCACTTAAA----GTAAACAATGGAAAAGAGTGAAAGGACTTAGACCAgagatggcaaaccttttaggaTTTTCAATTATGAAATCCGAAGTCCACTGTGGCACTACTGCCTTAGGCATTGAGAACAAAACTCAGATTGCTTGGAAGGAGAAGTAAA-CTACCCTAA-----CATGGAAGCACACACTGCTGTCAGAGGCTTTACAATCTGCTGGTTTGCACGATAGA-TTTGGACTTGCCAGTTCCTTGGAATAAATTTCCTAACTagcacatgtgtttgtgtgtgcacgcacacacaacacacacacacacacacacacacacacacacacacacattatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcttactggttctgcttttttctgaataACTCTGACCAATGAACTGTCTTTGCCAAATACTTGCCATGTCCTGCTCACCCCAGCCTCATCTCTACCACACTTCTTGGTGCTGTCTTTGCCTTGCCCCAGCTTTCCCCTTCCACAGGCACCCA--TACTT-AGGAACCCAAGGCTGGATGTGACGCTAACTTTAACAGATGTGATGGAGACAATAGAGAATAAGTAACAGATCAGAAAACGGGATA---TAGTTGTTCTTATAGACATCTGTGAACAGCGTAACAAGGTGTCTCGATGATCATCATTTCCTTGATTCCAAATGTCACCATCTTCTGCTCACCTGTcttcctcagttttttttttttt

a score=103173
s chr3           102308299 4738 + 160039680 [encoded data, 5047 characters]
s HiC_scaffold_1 112446365 4298 - 233722169 [encoded data, 5047 characters]

a score=31715
s chr3           102314216 2087 + 160039680 ATATTAGAAGACCATGAACAGGAGAATGAATATGGATGCTTAGCAAGATGTGGAGAAAAGAATGCT-GGAATTGGAAGAGGTTTGTGTGGTAAGTATCAATATTGTGAT-----------GCTACCGTGAGAAC------------TTTCTAGAAAGAAAGGCTCATATTTTGT-----------------CAGCACCACAGCAAATACACTC--TGAGATCATGGCTTCCCT---ATGGTCTGTGACAAATGCTACTTTTAAAAAC-------------ACAGCAgtaaaacacacataacaaaatccac-----acttggaacaatttgagcgtatggttttgagatattaaatgtattcacatt-----acagcccatctctgccaa------ctcaagatcccctcaccttctcaagggaaaactctatacctaccttgctatggcttcctatactcctcct--cttggcctctggcaattactactccaatttcagtttctgtgagatcaagtgctttagatgtctcttaaaaggagaattgtgtaatatttcttcctttgtaactgtcttatttcatgttgggtaattccttcacagtccatccatgaagtaacccaggccagcatattctt--ttttaaggtgaagggtaccctcccacaagggaattccatcccattctgcttaaccaccatgtgcagtttatc-atccatgtgcggttatctgagttagctctgccttgttggtcattgtaactggtgttgctatgaa-atggatgtacaaacaactgttcacatcctcactttcatttactttaggttatagccag------TGCTG--CAATCGAGTTGT-TTGGGATGACTTGGAGAAAATGTGGGTACCGAGTTCTGACTTTCTAAGGACTGCACATCCTGTTCTCCATTACACTTGATATGTTTGAAATTCCTGTCTCTGCCGTTTGGGGTTT-GCTTTTGCTAGAGGTAAGGctgacatgggttactgtatgatgaaccttgctggcatgacccaaatgaaataacaca-gtcactacggga---caaGGATTACACTAtttttattagatattttcttc------------atttacatttcaaatgctatccccaaagccca----------ctataccc--atcccctccgccctactccccaacct--------acccactcccacttc----------ctggccc-tggcat-AAGAATTAGACTTTTA------AGGTGTCATGTGAGTCTCTTTGTGGTGAGATAGGCACTATTGTTAGTCTGAATTTTTTTAACTAAGAGGCATCTTAAGTTTAGATACATGGCAAGATTGTCAGGCCTGTAGGTGACAGAGGCAGAATTCCA--ACCTCTTCGTGTTCTTAAGCACGATGCC------AGGTTGCCTGACAGAGGCCCTGGGAAAGCAA----AGGGCTAGGGAAGACCATGAGTAGGGACGAGCTTGTGGAATCATGTGAGATTGAATTATAAGGAGCTCTGTGATTTAATCCTGGAAACAATTCAGTTCTTATAAATAACCCTAAAGTATAAAATGTACATGGTCAT---------CATGTTAGTCCAGGGATAAAGGGAAT-GAAATGGGAGATGAGCCCATAAAATGT----AAAAAAGCTTACAGTGCTTCTCAGAAATGGAATAAGAATAGCTATAGGTTAAAGCCCGATGTAAGGAATGACTTAGTTTTCCATTAAAGCACAACTGAAAATAACCAAGAATAATAAGATGTTGGCCTCACATTTTTCCATTTGTATCAAGAAAAGATATTTTGAGGCGTCTTATGGAAAATATAACCTCAAGGGTCAAGAGAGCATTTATCAGACTTCTCGGC-AGATGTGAGCCAAACTACGAGGGGTCCGAATGTGTGCAGAGCAAAGTC-----TCCACGCCCGT---------TCCCTGATGGAGAAAGGGCCATACAGTGTACTCCTGGGATTCAAGATGTCTGGGC--ACCAGTGCACCATTCAGCACAGACAATAATGGTAGAGAGGGGT--CCGCTGGAAGGGGTAGAATAAGTCTTGGAGGAAATAGCCCAGGGA---AAGGTGTTATAGCCCCACAGCCTGTGGATAAGGAGCC----ACAGACACAGAGGTCACTTCTAAGGGCATCGAGGATGTGTTTTAGTCCAGTAGCCAGCCT-----TTCCTTGGGCTCTTTCCTTTTCTCAAGGACATGATGAGATCATGAGGAAATGGCCACAAGGAAAC
s HiC_scaffold_1 112451340 2181 - 233722169 ATATTACAAGCATGCGATTGGGAGGAcggaggcaggcaggaaggatgAAATGGTGAAGGGGATAAAAGGAATTGGAACAGGCCT---TAAAAGTTATGAAAGCTGTAGTTGTAAGTGACAGCTACCCTAATAACAGCAAAAAGGGCTTTCTAGAGAAAAGAGTTAACATTTTGTGAATATCTGCTGTATACCAGCATTGTGCCAAATATATCCCATTCATTTATGTCTTCACTCCAACCTTCTGAGATAGGCACTATTGTCTAAAATTTTTTGATTGTAAATGATTGTATAATGTAAATTACACATTTCATGTATAATTTTCACCATTTTAAGTGTTCATTTTGTTGACATTAAGGATATTCCCATTTTTGTATAACCTATCCCAACCattcatttctagaattttcttcatCCTCCTAAACTGAAATTATTAA--------ACAATAACTcccatttctcctccctgctcAGGCCCTGGAAACCACCCTTTTACCTTAGGCCTCTGTGAAGTTGATTGCTCTAGGTAACTCACGGAAGTAGCGTCACCTAA-ACTTGTCCTTTTGTAGCTGGCTCATT-CACTTTGC-CAACGTCTTCATGGCTCATC-ATGTAATAAT--GTGTCAGAATATCATTCCTTTTAAGGCAAATAATAC--TTCTGTGTGTACA---CATaccatatttttaatcta----------tttatctATCCAAAGATGGTCGTTtgaattgcttttgcttt-ttgagtattgtgaataatgttgcCATGAATGTAGAGATGCAAATATCTAGTCAAGTctttgctttcagttcttttggtttATACCCAGCAGACTTGCTAGATAATACAGTAATGCTGAGATTACCTGGA-AGAACCTGGATgcagatttctaattttctgaggAGCagtcatattatttttcataacaGCCGAACCATCTCACGTTCCTATCAGCAATGCGAAGAATTTCAATTTCTCCTCACAAATTgctgttat---tttcttgcttttgg----tGCTGGCTT--TCCTAATGTAGTGTTGTGTGTCATTGTGGTAAACCAAG-------------TCATTATCTATCCTTTTTCAAAAGAAGGCAACATAAATTT-AAGTGCAGCCAATAAATGGCAGAACCAGAATTTAAACCTGGAGCCCATCTACTCTGATTCTTGGTTCTTAGGGAGACTTAATTCAATTTTTCCAATACATCTGGCCAATAGTATCAATAATTAAAATCCTACCAACAACGTAGCAACCACTGCTACATGCAGCAAGATGG---------------TAGATGTAACTGAAAAATAGGAACTACAAATGTGGATGTATTACTAGagtctcattcattcat-taataaaGAATGAAGTTCATCACCATTTTATAT----GGCCAGAATGTCTACATGGGATTGCCTGGTGGGAGCCTGTGGAAGGCAACTAGAGGGATGGGGTGGG---TGGGGTGTGATGA-CCTATAAAAGTATGTGGG-CCAAATAATAAagacttttgt-attttttcctggaaaaatttctgttctcataaacaatttttaagccatatatatatatatatatatatatattcatattaatccaaggataaagaaaaaagaaatatgagatgagtctataaaattttttaaagaaaacacactaTGTTTCTCAGAAATGCAATTAGAATAGATATAGGTTAAGGCCGAATGTAAGGAATAACTTAATTTCCCATATAAGTACAACTGAAAATAACCAAGAATAATAAGATGTTGGCTTCACATTTTCCCATTTGtattaagcaaatatattttg-GGAATCTTATGGAAAATAAAACCTCAAGGGTTAAAAGGGCACTCATTAGACATCTCAGCAAGTTGTGAGCCAAATGACAAGGAACCTGTGTGTATTGAGCCGGAAGTCGCTGGTTCACTGTCCTGGAGAAGAGTCCCAGAGAAAGAAAGGGCCATGTGCTGTATGCCTGGG-TTCAGGATATCCAGGCTGTCCAG----ACAGTGAGCATAGATGCCTGAGGTGCAGGAGAATCACCATTTCAAAGGAC---CTGAATTTCAGAGGGAGGAGGCCAAGGAAAGAAGATGCTGTGGTCCAGGAGCCCAAGGACAAGCAGCCTACATCAGA-ATGGGGGCCTCTGAGAAGAGCA---------------AGTCTGACCTCCAGCTTGcacatttcctctcctttcccagtGTCCTAGGGACTTGGTCAGAGCCTAGAGAAGTGACCAGGAAGAAAC

a score=9151
s chr3           102320176 691 + 160039680 GGCTTTGTGCCACTGGAAAGGACCAAGAGACATTGGACTATGGGGAGAGTGCTGGACACCCCAAAAACTCACATATACTATAGGCTACAGAA----CAGTTTTTGGAAACCAG-GGAGAAAGGAGGTCATGGTTACTGACTTTAAAACCTCCTGAGAAACACATACATTGGAGAAGCCAATGGTATGCTTTATGGGAAAGGAGGTAAGTAATATGTGAGAATTCTTTGGTCTCTGAGAAGAAAAAAGACTT------------------------------------------------------------------------------------------------AGGGAGGATTA-------CAATAGGGTCATTGACA----------------------------------------------------------GAACAAGATGGAAAATGTGTGTCTGACTCAGAAGGCAA-------------TGGAGGAACTGCACCTCTGCGGTGTTGGGTCACTCATACATACA---CACATGTG-------GGAG----GCAGTCCAGACATGGAGGCTGGGTGTGGATAACAATCTCAGAGAGCCCCATCTCTC---TAATAAGACTGGCAACTGCCATGGCCAT-TCTGTATCCTGGGCATGTCTTGTGCTGTGTCA--CTAtgagcacctactgtgctctgggagatatgctagacaccgtggctacaaggatgagtaaagcag----gcGTTTTCAAAGTGTTCTGGGTGGGTGGGGTGGGTTCTCAGGCTCCTGGGTGACTCAGAAATAAATTAAGCATGTAAATGGATCATTACGGTGTGCG----AATGTGCAAATGCCGTGAGAATGCACAGCAGGCACATCTGAGAG
s HiC_scaffold_1 112454356 855 - 233722169 GGCTTGCAGCCTCTAAGAAGGATCAAGGGCCACACAA--GGGGGGAGGGAAGTGGGGAGCACAATAATTCACAC---CTGTGGGCCAAAAAGACCTTGGCTTCTGGGCACCTGAGGAGAGGAGAGGTTGTGGCTAATGACCTTACAACTTCCTAAGAAA-ACATA---TGGATA-------TGTATGCTTCATAACAAAGAGATCAA--AGTACTTAAGAGTT-TTTAGTCTCTG-GAAGAAGAGAGACTTGGAACTGCTagagtgtgtgtgcacatgtgtgcgcatgcacatgtgtatgtgtgtgcataaacttttatttgttgtattttaaaatttttattttaaagagaaaaataaaagcaacaataagggcttcaaaacaggctagtaggagagtaataattgtgtattgttatcttcatataaagttttcaagttaaaaaatgtGGAAAGTGTTTATCGGTCTCA--AggcaaaaatacaattaaatggaTTAGTTTTAC--------TGCTGGATCACGCACAGAAAGAGTGCAGATGCAATGAAGAGGAGTTGAGGAGACTAAGGGGGGAGTCCAGGTGTGGGAAATCCACTCAGAGGGCAGCAGCTCCCCGGTGATGACAATGACAGCAGCTCTTACCGCATGTGCATCC---AAATGT--------GTGTCATGCTATGAACACCTACTATGCTCCAGAAACT--GCTAGATGCTGGGGCTGCAGTGAGAAACAAACTGGtactatatttatattataccCTTAGAGGATGGAGTGGGTTCTCAGGGTTATGGATGAGTCTGAAGTATATTAAACACATAAATGCACCACCACAACATTCAGGATAGTGAACAAATATCATGAGAATGTAAAACAGGAGCATCTGATAG

a score=7345
s chr3           102335027 602 + 160039680 atttatttatttatttatttatttatttatttatttatttatttatttCATGTGCTTGTATGTATAACATGTGAATGGAGCTGgccactgtttacctgtggaggtcagaagacaattagcggcatttggttcttgctttccacccggtgagcccaggaatcaaacccaggtggtcagccttagtggcaggtgtctttacacactggaatgcttcaccagcctcTATCACTGTCTTTAATGATCTCAAGCAGTCAGTAGACAGACCAGAAATGCACAATGGGTGTTTCCTCTGAGCAGATAAACACAGTGTAGGACAGGAG-AGGCAGTGCCATATGGAGCCTGTAGGTGGCAGTAGATGCCCACAGCAGTCTGTGGGGGTTTCAGGACACCTGGGGTCACTCAC--------------------CACTCTGGCTTGGACTGGACAGAAAGA-GGGCCCATATCTTCAGAGTGGCTCAGTGTTCTGTATTCTTGGAAAAACGTATGTTGGGCCCCA-TCTTGGACCCTGGACATCTTTCCTAGATATTTTCTCATCACCTT----AGGTAGAGGGATGAAAAGAAACCTAGGGAATTCACAACATATTAAGCACTAGCAG--TTATATACCA
s HiC_scaffold_1 112481321 497 - 233722169 ATTTgttggttcattcattcatttattcattcattcactccttTGTTC--TCTAATCACATATTGGACACCTGCTCTGTGCTGGAAACTG----------GAGACATAAAGACCATTA--------------CTGCTGTTAAGGCTCTGAGCCTATGGGGGAAACTCA-------------------------------------------------AGCCACTATCCCTA-----------CTGGGGCGATAAGTAAG--GGCCGGGAATGCCC-----------CCTCAAAGCTG---------------GACAAGAGGAGGCAGTGCTATGTGGAACCTGTAGGTGGCAGCAGAAGCCCTCAACACTCTGT--GGGCTCCAGGACACCTGAGGGTAGGCCCTGAGCCAGGGCTGTGATGAACCCATTGAACCGGGCTGGGAAGAAAGACAGGCCAGCATTTTCCAAGTG---CAGC------TGTCCCTGGAAAG--GCATGTCAAGCCTGAGTTTCAGTCCCTCAGC----TATTGGGACACTTTCCTGTTACCTTTAAGAGGCAGAG---CTAAAAGAGATGTAGGAAAATCATAGCACATTGAGTGTTGCCAGAAGTGTATACCA

a score=16772
s chr3           102337949 854 + 160039680 AAGGCTTTTGATCACCAGCCACAGCTAGATTTCAACTGCAATAA-CCCTTGGCATGAGTAAGCTAGAGCCTCTCACCCAAATCTAAGCCACTTTCATTTCTGTTCTCTGATCTCATCTGTCTCGGGTGCCTGGTGTG--TCATTAACACGTGCAGCATGAGCTGT-CACGGCACTCACCTC-CGTAAGTGTGAGAACTTGGAGAAACGTGAATGAGAGGTATAGAGTAATAAAGGCCCGTTCTGGGCCAAGTGCTGGGGCTAGGCCCTGAGTGTGTGCCAATGAGTCACCCCCTCCCTGCCCTGCATGCTTAACTGTCCAACTCGGGAGCAGGAGCTGCCGATGACGAATGGTGACTTGG---AGGAGAAGGT--------------------------------AGAATTCCTCCAGGTGCAGCAGGAAAAGCAGGCCCCTGGAGGCCCCGGGAGAGCATGGGGTGGGCGGGCGTGATAAAAGGTGCTGAGTTTCTTGGTGGGTGGCAGGGAACTGACAGCCAC----------------------------CTGTCCACCTACAGTGCTGTTCACTTTGGCTAAGAAATCCATCACACCAGAATCACTTAGAGAAATGTTAGAAAATCAGACTCTAGA------------GAGGTTGAGACCACAGCCGAAGGCTTCCCTCAGCCTCCCTCAGACAGTGTCTGAAGTG----AGGCAACAGAATTC--------ACTGTAGGGCTGAGAAATGCCTG-GACTATACAAAATGGGCTCACAGGCATCATGTTGTTCCCTAACTATGTTAGCAAGAGCCAGATGGGATGTGTGCTC-ACCCATAGGTGCTGGAGCTATGGCTTCGAGACTCCTGTCTCAGCA----AGGATAGGCACAGCGAGAATTAGA-------------AGAGGCCTTGTTCTCCATAAGCCTGTGAGGAGGAGGGCACCA
s HiC_scaffold_1 112490941 914 - 233722169 AGGGCTTTTACTTATGATCTGCATTTGACTCTCAACTGGAACAAACCTTTAGCATGAGAGCTCTAAAGCCTTTCACCCATGTCTaagcccattttatttctctcatctgATTTTTTCAGTCGC-----CTTTGTGCGACTCATTCATGTCTGAAAGATGAGTTGTTCTGGGCACTCATCCCTCTTAAACTGGAGAGCTTGGGGGAACTGGAACAAAAAGTCATGGATAAGAAATGCCTGTGCTGGGCCAAGCACTGGGGCTGGGTAACAGGTATA-GAGGATGAGTAAGGCCCCTCCTGCCCTACATGCCTCACCATCCAACTTAC-ACCTGAATCCAC--ATGATGAAAGGGGACGTGGGTGAGGAAGAGGTTTTATGAAAGGGCAGAGTGCTGAAGGTGGTGGAGGAGTCTTCCAGATA-AACAGTAAAAGAAAGCCC-TGTAGA-----GAGGCATGTGCAGGGGATTGGTGTGATACA------TGTGGTTTTCCAGGGACAGTGGCCTACTGACAATCACTTTTTATTCAGAAGCACTGTTTAGGGGCCCATTCTCTGGCAGTGCTGTTTGGTGTGACTCGAGAACCAGTCATACCAGAATCACCTAGGAAAATGCGAGAAAAATAGATTCTTGACCACTCTAGACTGAGCTGGAGGTCACTGCTCCAGGCTGCCTCCTAATTCTCT--GCCAGAGTCCTGACTGGCCAAGG--ACAAagtttcacactgagctatggaCTTGAGAAATGTCAGTGGCTACA-GATTTGGGCTTATTGTCATCATGT------------------------ATCAGAGATCATGTTTGCCCGGGTCATAGATGCTGGGAACATAATTCTGGGATTCCTGCCTTAGCCTATTAGGCTAGACACAATGAGAAATGGAAACTCTCTTAATCAGAGTCCTGATTATCTGAAAGACTTTGATTAACAAGACACCA

a score=54648
s chr3           102340231 1621 + 160039680 AAAAGAACAGCCCTTTTGTTCCAGGAATGC-CCACAGAGTAATGATTGGAATAAAACACAAACTATTCTTAGAGGCACTCCTCAGAAAGTTGACACGGAGTCTTCTGTATATGCTAGGAAAGATGGGACAGATGCCAGCCCT-AGTGACAAAGCTTGGGGTTTGGGTCAGATACCTGGACAGTCAGGCCCTCTGATTAGTCACTTTGGTGGGGTAGAGAAAGGAAACTGACTAGAAAAT----TGTGTGCCCACGGTGACACTGCTGGCTCATGGAAAGACTCCC--TTACCGCTTCtcagtcattttgcaaacatgtgtggggtacctgttatgtcttagcaccacgtctagacactgg--ctaccacagtgacaaagcagaaaagtGT-GTACAGCTGGGGGCCTTCTCACTCCATGGGGTCAAATTAGAGCATCA--ACAAACATCATTCACCATTTGCAGAATGCCTTCAGATTTCTACCCCCAAATCTAGTCAAACCAACAGCCTGT---TTCCAATGAAAACCTATAGCACA---------ATCCTAAAGTCTGCAGTTCACAGGGGGCAATGTACAACTGTACCCCTAAATGTTCCGGGCTTTCTCAACAGGGCTCTGAAACCACGAGGGCAAGCTGGAGCCATCTGGACACACTTAAAACAATGGAGGTGAGAGAGGTGGTCCAGGGGCAGCCTGGGAGGCCCTGGGGAATTGCCTGG-----GCAGCCCTGTAAACAAATGCGAGTGGCTGCTGAGATGGTTTGGCTGGAGAAAC------ATTGAGGTTCAAAGCTTTGAAGAGAGTCTGCGGGGCAATC-TAACAAATGACTTTGATTTAATTATGTACCGCAGATTTTCTAACTGGCTTTGGAAGGAGACAGCACTTCTGAGATCCAAGTCTGGCAGGAATTTGCCATAGGTGATTTTTCAGGGTA-TTTTACAGAATGACATATTTGAGAGGCTCAGGAAATAAACAAACCCTTTGAAAT------------Ctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg------------------------------------tgCAACTTAATTTTCTAATTTCAAAATAGCAATGCTTATGCCCAATCAAA-ATATGTCTCAGATTTGAACTGATAGCCTTTTTGAGTGCCGTTTTTT------AGGAAAATATACACCCAGGCGTGATGTGAAGTGTTTTATGGAAACCACAGGGGCTTCTGGGGAACGGAT--TTAGTTTG-ATTCTAGGCATCTGTCTAAAGGACAGGGCTGTGTGGAATACAGTTTCATGTCTTGAGAATA-GTCCTACTGTTATCCAAGTCTTCAATACAAGTTTGTCTTCAGGAAGATTTCTTGGGGACTTACTGTGTGTGCAACAATGATCTGAGTGCAGGGTAAATAATAGAAGGGATTTAGAGCGTTGGCTTCAGCCCCGTAGCATGTAGATTCCCAAGGAAAACATTTTTAG-TGATGCTCAGGGGATAAGAAGAGCTTCCAAGACACAGAGAGCTTCAAGAAGGCTTCTGGAAGAGAGTCCTGGGAACTGGACCTAGAATGTCCAGTTATCAGTA--------------GGACAGGAGTTCT-CAATTACACTAGCTTGTTCAGGTTTCTGAGCTTTACCACACACATTGGAGGCTGCTCCTAACTTGCCATGGGGAACAACTACTGCAACTCTTATTGGAC
s HiC_scaffold_1 112491958 1711 - 233722169 AATAGAGCATTTCTTCTGTCACAGAAAAGTTCCACTGACCAGTAttcaagagaaaacaaattctaTTCTTAAATGCACTC---AGAAAATTGGCACTGGGTCTCTTGT----GCTGGGAAAGATGAGTCAAGTGTCAGCCCTGAATGACAAAGCTCACAGTTGCTGTCAGATACCTGGACAGCCAGATCATCTAATTAGTCAGTTGGTGGGTGAGAAGAAATTAAACCAGCTGGTAAACATTGTCTGTACCAGTGGTGACAGTGAAAGTTTAATAAAAGATTTCCCTTTGCAGCTACTCAGTCACTTTGCAAACATTTGTGGGGTACCTGGGATGTCTCAGCATCATGTCTAGACACCAGGAACACAGCAAAGACAAGACAGATGAGACTCTTACTGCCGTGGAACTTTGAGCCCCAGGGGGTCAAATAATTGCATCACAACAAAAACTA---AGCATTTCCAGAATAGCTTCACATTTATCTCCAAGAATCCATCCCAACTGACCCCTCATAATTGTCAATAAAGAGATACAGCACATTTTGACAAATCCTAAATTGTGC--TTTGCAGAGAGCTATGAATAATTGTACCCCTACAAGT-CCAGGCCTTCTCTGTGGGACTTTCAAGCACAGCCAGCAAGC-AGAGCCATCTGGACACACTTAGCACGCTGGAGGTGAGACAGG-GGCCTAAAGGAAGCTCAGGAGGCCCCTGCAAGAGCACTGGAAacagcagga--gtaaacaca-acgAGTGGCTGGTGAAATGGTTTGCCTGGAGAGGTTGGTGTGTGGAGGGTCAAAGCTTTGAAGAGAGTCTGCAGGGCAATCATAACAAATGACTTTGATTTAATTAAGTACCACAGATTTTCTAACTGGCTTTGGAGGAAGACAGCATTTCTGAGATCCAAGTCTGGAAAGAACTTGCCATAGGTGATTTTTCAGGTTATTTTTACAGAATGACATCTTTGTGAGactcagaaaataaacaaggtCTTTGAAATGAAGAGTGaacgtggtgtgtgtgtgtgtgaaagagagagagagagagagagagagagagagagagaaagagagagagagagagagagaccgcaatttaattttctaatttcaaaatagCAATGCTTGTCTTTAGTAAAATGTGTGTCTCAAATGATAACTAAAGATCTTTTTGAATGCCCCTCTtctgttaaaagaaaaactatacagAGATATGTTGTGAAGCATTTTATGAAAACCACCAGGGTTTCTTGGGAGGGGGTGGTTAATTCATACTTTAGGCAACTGTTTAAAGGACAGAACACTAAGATATACAATTT--TTTATTGAGAATGTAGCCTATCATTTCCAAAAGCTTTAGCACAAAATACTCCTAAGGGGGATTTCTTGTAGACTTCCTACGTTCATGGTACTAATCTGGCTATAGTGACAgtgacaagacagaaagaaaa-attggcATGATCTCTAGACCTTGCCAACTTCCAGGACAGGCGACACAAGATGAGGCTCTGTGAATGCCGAGAATCACCTGCATGGATGGGGCT--GGGAAGAACATGAACGGAAGGACCTGGGAGCAGGACCTGGCATGTACCATTCTCACTAGCTCACCACACCAGGAATAGAAGTTCTCCAACTCCACTAGCTTGTTCAGGCATGTAGGCTCCACCCTGCCCATTAGAAATCGCCCCTAACTTACTGTCAATAAGAATCATGAGAATCTTTATGAAAC

a score=75765
s chr3           102342493 4406 + 160039680 [encoded data, 5003 characters]
s HiC_scaffold_1 112493719 4711 - 233722169 [encoded data, 5003 characters]

a score=29342
s chr3           102352643 1378 + 160039680 TGACTGTCGACTCGTATTAACCAAATCAGCTTCGACATGAGGTACTCATACG--GTGTTCCCAGATCTCTCCTGACCGCTGCTTTATCCCTTATAACTGTTTTCTTTTGTGTACAAGTTTCCGagtcag--aattttctttctcatgaagtgacagcagttcaagcagacttagcaaaagtgggcgcacaccatgatggcttatgtgactgtaagcttggggaaaagaggagagggaacctggctttaatcgaagctggatcaatcaatgccat--ctgatattcctcccttctgtgtcccagttcagtatttctctgcattgacttcattct-atgat-----ctccctcatgatgataaaaA--------------------AGAAA-----TTCCTTCTAGAATATGTTCATTGTTCTGAACTCTGACTAGTCCTGTA-GGATGACATACCTACTCCCAACCAGTCAGTGTAT---TTAAGGA-TCTACATt--tataatatataagttacatatataattatatatttataatat----------------attttatatataatca----------catacaattataatatatttattat-----------tttaatcatatattta-----tacagaaaactatataatttatatta---taatgttatattatgatcataatatatttatatataatacataaacatattttatataaatatatttat---aatatattaacataatatata--ttatataAAACATATATGTGTTCAAGTGTCTACCACATACTGAGCTCTTTGGTCATGTTATCCatatcatcacaatatcatcacaatatcGTCATCAGGGTCAGCAAACCTTATCCAAGAACTTAAACTCTA--------AAAGA---AGAAGGAAAAAAAGCCCAGCTTATTCCATGCAACTGTACAAGCCCATGAATATGTCTTTTTCAGTGTACTGTTTCCCTGGAGACCGATTTTACTAGTGGATTTGAAAAGAATTTACCACTGTTGCATGGTTAAGGATCATTAGACGGAATTTCTTCTGGTCACAAAGTTGGATTGGGGGATATCAAAAAGGACCTCTTCTTATTTAGTGAAGATGAATGGCATTCTCTGCATTCAC-ACAGTCATAGGTCAGCCCTTTGAAAGACCTTGCATGCAGCCAGCCCTCATCCTGATTAGTCACAGCAGTTAAGGCACAGAGGGAGACAAGCATCCTTTGTGAACTTCCACATTGTCGCTCTTCCTCTCAGAGCTTGGTACAACTGTATCAGCTTTGAAATGTATAAATCTAATTAAAGTGTGTCTGG--CTTTCGAGAGAGTGGAGGGCGATCAGGCTTCTGAGCATGGTGTTCTCAGTGGATGCTCTTTACCCAAACGCATGTCTTCTTAATCACCTTAAGTCTAGAGCTCAAGTCCTGGGTCGTAGGGGTGGCTGACCTA-CACGGTGGCTTAAAACT
s HiC_scaffold_1 112516587 1393 - 233722169 TGATTGTTGACTTGAATCAA-----------------------ACTTATACATAGTGATTTTGGCTCTGCCCTGCCCAGTACT--ATCtcttttaagggttttttttttttt-taaatccatgatTCAATCAAATTTCTTC-------AGTG----CAGTTCAAACTGACTTAGCAAAAGTGAGTATACACAACAGTGGCTTGTGTAAT-----------GGAAAGAGCAAGATGGTTATCAGATTCA------TCTGGGTCATATAATGTCATTACTTCTACCCTTCTCAGCCATCTCTCAGTTTAGGTTTTCTCCATATTGAATTCATTCCCATGAAGGAGATCCTTTCCTGATGATTAAAATAGCTCTTGGCAGCTCAAGGAGAGAGGTCTTTCCTCCAAGAATCTGTGAATGTTTCTGAAATCTGATTGGTCTTGTTTGAATCACATTGCCACACTTGACCAATCAGGGTATCAGTAAAGTACTCTGCTTTATTCTCCTGTATCATATGCTTACGTAATGGTAATGGTGTGAAACTGACAGCCCTTCTGGGGTTTTATAAACACTCTGGCCTCTGTTCATAC--CCAAAACACACTAATTTTCAGTGATTGTGTTTGACCTTAAATTTCAGCTCTACCGCCTCCTAGATAGATGACATTGAGCCAAT----TACTCTGGTTCCTCAATTGTTTCATCTGAAGAATTAGGATA------GTAATAATATTTACTTCACAATGTTGCTGTGAAAAATAACTGACTTCATACACATATCTGCTTC--TATTTGGCACATACTAAGTGCTTTATAGgtgttgttactattat-----tattatcaca-------CCTTAAAGGCAGAAAAACTTGGCAAAGAACTTAAATTTTATGCTTTTGAaagattcaaaaggaaaaag----ctgCATGGTTCATGCTGGTATATAAGCTCTGGAATGTATCTTtctcagggagaaggcact---gAAGCCACTGTTACCAAAAGATCCACAAAGAATGAGACACTGCTGCATGGTTAAGGAACATTAGCTGAACTTTATTCTGGTCAGAAAGTTGAGATTTTAAACATCAAAACAGTCC-CTTCTAATTAAGCAAAGATGAATGGCATTTTCTGCATTCATGACAGT-GTAGATCAG-ATTCTAAAAGATCTTGCATGCACCCAGCCCTCATCCTGATTAGTCATGGctattaaaaatcagagaaagacaagTATCCTTTGTTGACCTTCACATTATAGCcctttctttcagggtttggtaCAACTGTATCagctttgaaatatataaatccAATTAAAGTGTGTCTGGATCATTTGAAAAGGGAGAGGA-GATTAGG-TCTTGGGAGCAGCtttcttattttatgttcttttcccAGATACTTGATTTTT--GCCTCCTCATTTATGGACACCACTGTGAGTGTCACAGTGGTGGCTGACCCACCATGAGGTTTCAAAACT

a score=47242
s chr3           102354962 2591 + 160039680 gtcacagtggtccatg-ccca--gtgaag---cagagctggcttctcttcccaggccaggggacggatttgtgaacataatgaattctttcatcaatttatccctttggctttg-gggtggtttgtt-cacagcaatggc--atataaacagaaGAGGGGAATGTATGCTTCCCAGCTAGTAGCTTATGGAGCAGTGAGAGATTGT-TGTGCAAATACCTTCAGATGAAAATCTCAAGGCATTGGACAAATCCAGTTA-------------------------ACAG----------------AGACCTCAGAGATGCAGACTGTGTATGTATCATTATTTTCCCAACCCGGTGCCATATAGGCCCTTG-CAGCTATGTCTACTTTCCTTGACCATGGTTTCTCACAAGCTCTTGGCATGGTTTCAAAAGTTGAGGACAGGCCATATTCATTTCATTTTAAAAATAT-----GATATACTTTAA----TTTCTGTAATAAAAAAGGAATCTCTTCATTTTGAA----ATTGGGTGACTCATG-CATAATGCAAGGATTTATAGGAACTAGATTGGTGGGGATGCCCTGATGACACAATCCAAGGATGGGATGCACGCTTAAGGACATG--AGTAACTTCCAACTCCAGTAGCTCCTCTGTGACTCTAGTCATTCATCCTGAGATGACATCAAGGGTGCAAG-----GGCTGCTGCTGCACAT-------------------------------------TTGGATTCTT-GGCTGGTGAGGCCATCTG-------------ACTGGGTGG--------------AAGTCAACTTCCTTGGAACATCTCCCATTACCTTTGGGATTCTG--------TGTTTCTTCATCTTTCCTACCAAGAGGTCTTTTTCCTCTGCTATCT-GTGTCGATGGAGTTAAGAAGCATTTTTTTCCTGATCTTTGTCCCTTCCCAGTCCTCTTCTTACCAGGTCTCCAGTGTTTTCT---------------CTGGTCAGTGCCTTTTGGGGCTCTCTTACTGTAAACACCACCAGAACAACCAGGa------ttagtacagtaaattgcagttggcagaggacttccacagatctgttcttatccaagcttcacgtgcaatataacattattattctaatagggtcatcattaccatttcagatttacataagaggaaccaggctcttagggtgaagtcacatgtccgagatcaatgaactcg-gagtggaggagcctggGAGCACAGGCAGGTATTCTGAGGCAGACCCTGTCCTCTTCCGGTTCTGTCAGGCCCTGTCCTTGTGGGTAGACAGAGTGGCTCCTCTCCTTCATGCACAAGTAATTATCATAATGATTGTTGTCATTGTTCACCAGCACGGGTTCACTCAATG-GCCTTCATTTTCTTTTCCCTGACAATAATTTGCTATTCATAGAATAGGGTGATGTAATGGGAACCTGCTGAGAATAATTGTGTTATTTTAAGCCTCAGTTTACCTATTAGTCCTCGGCTTTATGTATAAAA---------------ATATAGCTGCTGTAAT--TATAATGATATAATAA----------------------------------------------------ATACTTG-----------------------------------------------ATTGTTTTAATAAACAACAATG------------------AAGCTTCACAGAgtctggtatttagcagcttaataagtac-ttcaatacaaac--tacttcatttga--atctcacaattgcccaataacacttagcaggtcatacgcctatttcgtggattatggagctgaccttcaaagatgtcaggtatctagtcc-caaCTCCTCACAAAAGGAAAGGTACTCTGAGATTGGTCCTCAAGGTTTCAGAATTGTTCTGTTCATTTCCCAGTACCTCT-GCATGG-----------TGGGAGGTGGAGGGCTG---------------------------------------------------CCCAGAAA-----------GCCAGATGCACTGAG------------TCAAGGTGGTTGGGCTCA---------------------------------AGGCATTTACAGTTCTAATGAGCCCCTCGCTTGTGCATGCTCTTTCTAGCTTGTGAGTAACATTTTGAGTAGGTTTGGGGGATGGTGGGACATTCCCATGATGCTCTAGTCTCATCATCTCAGAAAGGGTTGGTGGCGC-ACCTACCTCACAGGCTAAGAGCAGTGAAGGTAATATGC---AGAAGTCAT-TAAAATTCATCTCAGGCTACTGATGTTACTGCCCAGTGTTCATCATGCACAATGTAAAACATGCTTGTAAGCTGAGAGAGTCAAGTCAGGGAGTTTCTGGCCCAGCCTCAAGGGCAGCCATTCACATAACATCTCATGACTTTGGTTCTCATAGATTTGTGTGACATGGCAGATTA--GGCTAAATGAGAACCCGCACCACTGCACTGTCTGTGATGAGCTACTAGGATAGGCGTCCATTC-------------AGCCAAGTGTCTCACCTCCTCAACTATGAGG----------ACTGCCATTCTTAAAGATG----AGCTCTGTCTGTGAATGGGTGTGGCTGCTCCTCCCCACTGGCAAAGGTTACCAAAGGCTGAGGAGAGAGGGAAGAAAGGTGCCTCTTGTCCCGTCCTCACCCCACGGCCCTGTTGGGCTTGCCTGTCTCCACGTGCCTCGGATACAAAGCCAAACTGGAGTATGGGAGTTGCTACTCTTGCTTACTGTAATTCAGAGCTGGCTGGGAAACTTGACAGTGCCAGCAATTG-GCAGTGAAGGGTGAAGGAGGTTCAATTGAGGGATTATGAAAACCACATGCTTGCTAGTTGGCCTCTGAGGGAGGAGAAATGTACCCCATAGGGATTCATTTATTCTTGAGCCCTGGGTCAGAGAGTGTTGGATTTAAGTCCAGGC
s HiC_scaffold_1 112517941 2906 - 233722169 GTCACAGTGGTGGCTGACCCACCATGAGGTTTCAAAACT---TTTTCTTCCAAGGACAGATGGTGGAGTCACAAACAGGATGGACTTT---GTAGGTTTTGCCCTCTGACTTTGTGGATGCCTTGTTTCatagcaaaaaataataagagcagAGGATGAAAATATCTGTT--CTATGTAATAGGTTGTGAAGTGGTAAAAGAATGTATGTGAAAATACT-----ATGTAAATCTTAAATCATTGTTCAGGTACAGGTAGTTTTTCCAGGAGGACTTGAGTAACACAGTATCAGATCTGCTGACATATCCCAGAGTTCCAGCTT---TGTCTCACATAGAGTTTCTGGCTTTGTCTCATATAGGCACTTGATTACTATATCTGCTGACTTTGACTGAGGCTTCTCAGAAAATCTTGATAGGCT---AAAACAAGAAGACAGGCCAGAAC------------AAAATACAGTTGGGTGCGCtttaaacatttcataaattaaaaagctaacatttgtattttaaagcacAGTGGACAAATCACAATATAATACA-GGATTTATAAGAAGTGCATTCCTGGTGTGTCCCAGATGACA-AGCCTAATAATGGG---TGTGCTTAAAGATGTGTGAATAACTACTT-CTTCATCAGTGTCTTTGTGACTA-AGTC---CACCTTCAGATGACATCAAAGGTCTAAATTTCAGGCTGTT-CTGCATGTGAGTGCTAGCCAGGGACAGGCCTGTGAGAGTGCTGAGTTGGATGCCCAGGCTGGTGTG--CATCTGCCGATCTCTTGGTGCTGGGTGGCTGTGTGGTCCCCGAAGTCAGCTCCTCTGGAGCAGTGCCTGCTGCCTTCCAGGCTCCAGCCGACCTTACCTGCTCACTTTCCCAG-----------TTTCCCTTGGCTAACTAGTATCTAGGGAGCCGGAAAAC--CTTTTCCCTAGGCTTTATTCCTCTCTGACCCTCCTCTTACCAGATCCTCAGAGTCCTCTAGGAGCCAGTTTCTTCTCATCAGTGCCATTTGGT-CTGTCTTATTGTAAACAGCATCAG--CAACCATGACAACATTTGTGGGGGTAAATTGCTGTTTACAAGACACTTTTATAGGCTTCCACTTATCTGAGTCTCTCACCAAATATATAATTCTTATTCTAATGCAGGTGTCATTCTGATGTCAAATTTGCATA-GAAGAAGGAGGTTATTTGGGTAAAGTC-------TGGGATTAAGCAACCTGTAAGTGGAGGAGCCTGAACATCAAGGCAGGTATTTTGAGGT----TCCAATTTCCTTCAGCTCTG-CTCTCCATGTTCCTGTGGGTAGACAGAGAGGCACTTCTTTCTTACACACAAGTAATTATCATGATGATTGCTGTGATTGCTTAGAAGTTTGGGTTCACTCAgtgtgtctttattttcttttccctgaaaaGAATTTTGTCTTCACAGAATAGATTTATGTAATGAAAACCTACtagaaataattatatatacttaAACCTCAGTTTATCCATTAGTTcctatttttaagtttaaaatataataataatcatataaAACTACTATAATTGTATAATAGTGTAATTACAATACTTTGCATATTTGGTAGTGGAggaccgggaattgaactcaggactgtatacttgctaggcaggtgctgtgccactaattTATATCCCTGGCCACAATATTTACAgtattaataaacaaaaataatagtaaatgataaaaacaaagtttttagTGTTTGGTATTTAATAGTTTATTAAATTTACTAAGTACACACCttaattcatttgatttttttacaaCTGCTC-ACAAAGTTAAATAAATAGTGCGCCTATTGTATAGAAT----AGCTAAACCTCAGAGAGGTTAAACGCTTACTCTACATTTTCCCAACAAACAAAAGTTGCCCTATCCTTTATACTCAAAGTTTCAGCCTTGCTCTGCACCCTTTCCAGCACTGCCAGCATTGTGTAACTGAGCTGGGACAAGGAAAGCTGGGAATGAATTCTGCTTATTGTCAATTACTCTGTGCCCTAGGGCAGTAAGTACTCTGAAACTTTAGTGTGCACCACAACCTCTGAGGAgttatgaaaattcaaatttctgGGCCCAACCACCCAGATTCAGGGATTCTGGGTGAGAAATAAACATATGCCTTTCTAGTAAGTCTCTGATTCATAT-TGCTATTTCCTGAACATGACGAACGTTTTGAGTAG------------------------CATGCTGATGT-GTGTCATCATCTCTGAAGGAGTTAATGATACAACCCTCCTTACAGGATGAGAAT----GAAGTAACATGTGTAAAAAGCCCTGTTAAACTC-TCACAGGCTAGTAATGTGAATACCT-GCTCTGATAACATAGAAGGCAAAGCACACTTGCAAAATAGAAGATT-----------ATTTCTCGGGCAGCTCTCAGGGGTGCTATTCAAATAAAATTCCATGTCCATGGTGCCCAT-GATTTGTGCAACATGGCA-ATTACTGTGTGAATGAGAACCCAAAACTCCCAGCTTACACCTATGGATT-CCACAACAGGGTTCCACTTTAAATTCTATTGAAACTATAGGTCTCGACTCCCTGGTAACGAAGGTGCACCAGCACAGCTAGTTTCCTTTCTGCCACAGTTTTACCTTTCCAGGAGTGTGACCATACCTCCCATGTGG----GATCACTA----CTGAGGACAGAAAGAGGTAAGTCACC----ATCC--TCATCGCTCCACCG------TGGGCTTCCCTCTC-ACACG-GACTTAGCTAACTAGTCAGGCTGCAGTGT-GGATTTTTCCCTCTTGCTTACTCT-ATTCAGGGCTCCCTGGGAAGCTTGACAGTGCCAGCAAACATTCAGTGGAGGGAGCAGGAGCCAGAGAAGAGGGCCTCT-CAAACCACATGTTGGCTAGTCAGCCTCTGAATGA-GAGAAATTGGTCCCACAGGAATTCATTTATAACTGACTCTAATGTCAGACAGTGTTGAGTTTAAGTCCAGGC

a score=78475
s chr3           102358191 3062 + 160039680 AGCCCAGTGTGGGGGAA-------CTCCATTAAGCCCAGAGCAGGTTCCAGGTGCCATCTCAATGCATGGACAAGAGATGGTGTAACTGGGGGAAATTGGCAGGATGGGAAAAG----TGTATTCTTACAGTCCACAGCCTCCTGAT-TCCCCTCCCTGTCCTTTCAGGACCCTTCTTAGTCCTCAGGAGC-CAATTCAGAAGTCCCCAGATCAGGT------------------CAATATTCCCTGAGCA-CCCTAGTCTGTTGATCGGCTGAGACTGGCTGAGACTGCTGGCTAATTTAAACAGCCAGTGGTGGTGGCTC--CACTCTCCCATCAGCACCCTTCGTCCACCCGAG-----GCTTCACTCAAATTT-GGAAAGTTACAGGCTGACAGGGTTCTGGAGTTTTGCTtctctctctctctctctctctctctcgctctctctctctctctctAATGTTTCATTTCTTTCCTTTTAGGATCTGTGCCCTAGTTGTTCTGGGAAACTTGTGACCTCTCTGTGTTTTTAATTAGAAGATGTCA-TTTTTCCATGGCAACCTATCTTGATGTCCTAAATAGAGAAACTGTAAAATCAGTTTCCCTACGAAGGGCGAAGTGGTTGGAATAGCA-----CTACCCGAGGAGTGTTGGTGCCCCAGTTGGATGTCGCCAGCTCTAGTGACGATTCTCCAAGTTCAGGAAGACGATGGGGTCTCCTGGAAAATCAGATCTGCACTGGGGACAG-----------------------TGGGCTCATAGAATCCAGTCCTTCATGATTATGTAGAAGTATCTGCA-TTTCTGACTGGCATGGGAACCAAATTATGTCAGCTATGGACTCTGGTGTCTCCAGGGCCATTGGCCAATAGGTGATAACATACAGAAGCCACAAAAAACATTGATGGGAAACAGTTGAAACCAGCCCAGACTCCATGGTGACAGGATTTGTACTGACCCTTTCACCCTAAGGCCCTCCCTCCTGAAG-GAATAAATGTCTTCAGGGAATGATGGCGGAAACAGAGAAA-GATGCCCCACCCT--------------------------TAGTTAAATGATTTGGCAGAAAGTGATTGACTTAAGAAAGAATGCCCTGAGTTTTGTAATTCTGGTTTTTCTTCCTTTTTTTTTTTCAGCATCATTTCCATTCAGTAAGGCAGGCGTGCTGATAAAGGAAAGTCATTCTGACCACAGGGACCATGTTGATACATTTT-AAATTATATGGTAACATGACATGCTGGGTCCTTCCTCTGCTCCTG----------------AACATGAGAAACTGT------GGGGCTCCTGCAGGGGACACA----TTGTTGCAAACCCATGAGACCTTAGGTACCCTTTCGAAATGACAGTTAACAATTGTTCACTGCTTGTCATTTC---AGATGCTTAGCGTGTTCTG-GTTAAAAGCTCA--ATGTAGTACCAGCCAGAGCTTGCTCCCCCGCCTTCTGTGGGCCAAGGACCATGCTTCCATGCCTTCTTTTCTTATTCACTTGTGTC-GCCCTGACTTGCAGATTCAGGGACTGGAGCTTAG-------------AAAGGTGAGGTTAATTCCCAGGCAGAGTGTGGGCTTCAGAGTCCATCTGCTCGTGCAAGCTT---------CCTCCTCCCTCTCCGC---------CTTGGATTCAGGA--------CACTGGATTTCCTACACTGTGTGTATTCCCTTCT-----TGGGTCCTTCAAG-ACTGTGTATTTCACCTAAAGAACACTTCCGTAGGACACTGCTTGCCTGTTTTTTCCTCACCATGCAGGTCTCTGGT----TTTGGTGCTCCTGGGAACGCTCCCTCTGCCCTCTGCATTCCATCCCATGCCGCTCTTCCATTCCTTCAAATTGCTTTTCACTCCCAGAAGTTTCCCtgtttctttactctttgcctgactaggatatcaactccatgctatgcaggacttcatctccttcac---------------------------------------------tccatgcccctactacaaagaataatgcctgactcagagt-aagcacttagctaatccttgctgaatgagtTGAA--GTATAAAC--GCACTGAGTTTTGTTGTGAGCATCCGTGGTACTGATA--ATGCTGCAACAGCCACCTTAGTACCACTGGTAACAGCTGGTGCTTCATTATAAG-TCTACATTGACTT-AATGCTTCTTAGCAGAC----AAA------CATTATTTCTTTTGCCCCGTGCTTTA-----------------TAGAGAAGGTATGTGGTATTGGTGTCATCAAGAGGCTGAGAATCATATAAGAATGCATTTATATTATCTCAAAATGCCAAGTGT-GACATTTTGTTATTGAAAGAAAAGGTAGA---CAGTTGATACTCCA----AAGTCCCTAAGTCT----CCTGATGCCTCTGTTCCCTTCTCACTTAA--AAAGAATGTTGAAGCATCAC---AAGAAGTGCCAATGTAAGAGGACTAGACTCTTGAAATCAGTTTTACCTAGTATAGATGCTACTAGGGTCAGAGGCCA-GTCCCTGCTTTACAAATCCCTGTGTTTGAATTCTAACTTTGTCCTCACCACTTTCATGAGTATGGCCAATCTCCTGGCCCACTAGAGCTCTGGCATCCATACCTATGAAGTGGGAGGCACCACTTTCGCTTGCCTTCTTTCTCTGCAGAAGGTGCTCTGGGAAGC-AGTGAGGTGGGGCTTGGAAAAGCAGCTGACCTGCCTGGCTAACTTGTACTTAGTGCACAGCACAAGGAAGAGGTTTTTTCCTTCTCCATTGCTCAGCTGAAAACCATCCAGCACTTGTCTTCTCGAAGGAT-GTGTGATGCCTGAGTGTTTAAACTCCATGTCTTCAAACCGAGCCGAAAGTTTCACAGGTCACCCGTGGCCAGATGGCTCAGTCTTTGACCTCATTAGAGAAAGGATATCTGGAAGGCAGGGAAAGCAAAACAAAACACAAAGCAGACAGACCAGAAAAAAGGTCTCAAGGAAGAAAATAGAAAGTTCTTTGACAAGGGGAAAAAATAGTGTGTGGGAAGAGAGGATCTTGCCAGAAGCACAAGGCAGGAAGAGCCTTGGC---GGAGGCTGTACTGGGTGCCAGTAAAGAAGCCACGGGGAGCACGGCGTTTCCTTCGAGTCTTCTGAAAGATGTTATGTCTGGGAGGCAAGTTCCTTCCCTACATCCCAGTAACACAAACCTACAGGGAACTTGTCCTCAGGTGGACACATAGGGTCAGTGGGGCAG
s HiC_scaffold_1 112521086 3145 - 233722169 AATCCAGTGTGGGAGACAGAAATTCACCGTAACACATAACACAGGTTTCAGGCACTAC-----------------GAATGCTACAAAGAAGAGAAATTGGCAGAGAGCAGTAAGATCGTGTACACTCAGAACAAGCAGCTTTTTGACATCTCATCTCTACCCTTCCATGCACCTTCTTAGAGCTCAGGAGGGAAACCCAGAGGCTCACAGGACGAGCATGAATCATTGTCTTAGGCAATATTCTCTAAGCATCCCTAACATGTTGTCCAGCTGAGCCT--------TTGCCAGCTAACAGCAACATGCAGTGTTGGTGGATTTACACTCTCCATTCAGCATCCCCTCTCCAACCCAGCAGGCATTTCATTCAGGTTTTGGAAAGTTACAGACTGACACATCTCTGGAagtttga----------------------------------cttttattttctaatgtttcGTTTCTTTCCTTTTAGGATCTGTGCCCTAGTTGTTCTGGGAAACTTGTGACCTCTCTGTGTTTTTAATTAGAAGATGTCATTTTTTCCATGGCAACCTATCTTGATGTCCTAAATAGAGAAACTATAAAGTCAGTTTCCCTATGAAGGGCCAAGAAGTTGGAATAATAGGAGGCTTCCCAGTGAGTGCCAGTG-CCCAGTGTGGTGGCTTCACTTCTGG-GAAGGACCTCCAGGCAGAGAAACAGCAGTAGGTCTCTTGCAAAA-CGGACCTGTGCTCAAG-CAGTCTCAGCCAGGACCCTCTTCGTTTGAGTCCATAAA----AATCCTTGATGGTTCTGTGAGAGAATGTGGACTTTGTAAGTGACACAGGAACAAAAACATG-CAACCATGAACTCTAGTGTCTCTGGGGCCAGTGGTCCATAGGTAATAACTTAAAACAGcca-gagaaacattggtgggaAACAGTTGAAATCAGCCCAGACTTCATGGTGACCGGATTTGAACTGACCCTTTCACCCCAGCACTTTGCCTCCTGAAGAGAAGGAGCATTTTCAGGAAATGAtgaaggaaacagagaaattaTGTACCACTCTGTTACAAGTCAGTGCTGAGGAAATAGTAGTTAAATCATTTGGGA-ATAGGGTCTGGTTTCAAAAAGAATGTCCTAAATTTTGTAACAttgagttttcttttacttttttataca--aTAAATTCTATTCAGTAAGGCAGACATGCTAAGAAGCAAAAGTCATCCTGATCACAGGGATGATACTAatatatcttaaaagaaaatgggTAAATGATGTGACAGTTCCTCTTGCTACACTTGTGTAAGGTAGCAGGGCACCATGAGAGACCCTAACATGGCTGCCCCTTCAGAGAGCACATTCCTTCCTGCAGACCCACAAGGGGTTAGGCACC----CACAATAACAGCTAACACTTTCTGACTGTTTATTATTTCCAGAAATTATGTTTGTGCTTTGCATTATTAACTAAGCACTTATTAACAGCAGTGGCT---TTCCATGATTATAATGTGCCAAGA---ATGCTTTCATG-TTTCAGTTCATATT-ACTATTGTCTGCTAGAATTTTCAGATT-AGGAAAGAGAGGTTGGGTAACTTTTTCAAAGAGGTGA-------TAGCAGGC--AGTACTGGCTCTACCGTCTGCCTGA-CTTACAATCTCTGTCCAGTACTTCTTCCCACCATGCAGGAGAGCATCTGGAGTCAGGAAAGCACATCAGAGGAGAGCCCAC-----------TCCTGTCTCAGGACAGGCCTTTCACTCCCTTTGCCTGCCGCCT---------TTTCCCAAGATTTGGCTTGGCTCTTT----CACATGATTTAGGTCTCTGCTCCAATCTGCT--TCCTGAGAACACATCCCTTGCCCCACTTCCTGTATCCCATTTCTCATCTCAGTTCCTTCAGGATGCTTTTCACTGCCAGAAATCACCTCATTTATATTC-CTTCCTTTGAGTAGGATGGAGACTCCACACTAGGAAAGACTTCATCTCAatcactgatatatatatatatatatatatatatatatatatatatatatatatatatatctgc-----agaATAGAACCCACCACAGAGTGAGGCTCACAACAAAAGCGTGGTGAAT-AATCAAATTGCATAAACTAGCAATGAATTTTGTCCTGAGTACCAATTATAATGATGATATGCAGCAGCAATCATCCTGATA--AATGATAGCTGTTAAGTGTTTATTGTGAGCTACATATTGTGTTGAACACTTCTCATCTGACTCCTAGAGAGGTTCAGTAAAATTTTTG-CCCGTGTCTTAAAGAAGGAAGTGAAACTTAGGGGGTGCATGCGATGATGGTGTCACCAGGAGGCTGAGAACCCTTCCAAAGCACATTCATGC--GCCTGAAGTGAAAAGTGTGGATGTATGATTATTAGAGGAAAGCATGTAACCCAGCAGACATACCATGGGGAATACCTAAGGCTGTAATCTTGGGACTATATTTTCTTCTCCCTcaaagagagaaaggggaagcATCACAATAAGAGGTGCCAGGGT---------------CTAAAATGG--------TAGCACA----CTACAGTGGACAGAATCCACGCTCCAATTTTAGGAGTATCTTGGTTTGAATTCTGACTTTATCCTTAACACTTGTGTGAACCTGGCCAGTCTTTTGATTT-CTTGGACTTCAGCTTCTATATCTGTGAAATGGGACA----------------GTGCCTGCTCTGCAG-AGATGCTCTGGGAAGCAAGGGAGCCGCTGTATGTAAAAGCAACTGGCACCTGTGATTAGAGTACATTTAGCATTCACCA-----AACACGCTTTTCCCTCCTGGATCCGTTTGTTACAGATCATCCAGTGTTTATCTCCACAAAAGGTCTTGTGACTTCTGAATGTTTGAACTTCATGTCCTCAAATTAAGCCAAAAACTGTACAAGTCACCTGTGGCCAGATGGCTCAATC-CTGACCTCATTAGAAGAAGGAtgtctgga----aagaaaaacaaaacaaaacacaaaacagacgGACCAGAGAAAAGACttcaaggaagaaaacagaaactttttTGACAAGG---AAAAATAGTGTGTGGGAGGAGAGTCTATTGCAGGAAACACATGGCAGGA--AGTCTGAGCTCAGGAAAATAT----GGTGCCAGCCACTGTGTTACCAAAGATATGGAGCTTCCTTTGCTCCTTTTGTGGAAGAGTATACTTGGGGAAACAGTCCCTTTGCTAGATGCCAACATTGCCAACCCATAGGGCTGCTGTGCTCA----GAGACATA-GGTCAGAGGACCGG

a score=37499
s chr3           102363944 1703 + 160039680 TTTCAATGCAT-AGTTCCCAGATCGCTCTGGGTCTGGAATCAAA--TCCAGAATGGTTAAAAAAAAAAAGGAAATATTCTTTGGGGAGGTTTTGTGGGCCAT---TAGCACTTCCACATCCAGCCCACTGGAGT--------GAACTGGTCAGCTCCAAGCTCAGGGCAATCTAGAAGATGCAGAGAAG--AGGAGCCCCCACTC-ATCTTCTAAGGA----------------------TGCCAGTCTCTGCCCC-------CTGTGGTAAGTAAACTGCTCTATTGCTTTTGTTAGTTGGAACTAAAAGGATTGTTCATTGATCCAATGG-CCTAGAGGTCCAGGGACACAGTTTTATGGATTACAGTGAGATTTTCCTTTGACTATAACAT-GGGAACTTTCCAAATCTACCGCATTTGATAGAGAGTGAGTGGGTCAATGGAAAGGAAGGCCTGGTTTGGATGATGCAGAGTG----AGGGGGGCTCAGGGGTGAAGTTTCATGTTGCTCACTGATCTGGCTAACTGAGAAAGCTTCTCCTTACTGTTTGTATAAAGAACAACTCAGACATCTAAATGGCCTGGA--------------GGGACTTCTTCAAGCATGAGTGGGCTCATGACTCAC---AAAGCTCAAGTCTATAGATGGTAGTCACCCAAATGTTGGTTTTGAGGGAAGGGCCTCCCGGGTGTCAAATGCAAGGAG--CAGTCTTTGCCTCTGGTTTCTTTCTATCCACCACTAGCTTTGACAAACAGCTGAAAAAAGTCTTGAGCAAAAATGTGTTCAACTCCCTTTCCTGGTGAAGATATTTTATGTGGACACCTAGCAACCCAGATCCCAAAATAACTTCATGTGGGAAACACTCCAAACACGGTCCTTTCTCTCCCTTCCTCCTTATCCCCACTCCCAAGCCTTCGGATTTGGAAGCTCTGACTTTGGGGATTTTAACTGTTATAAAGCCACTCCGGAAGACAACAATGAAAGGAATCGACTGGAAATTTCCTCACTAGTAATTTAGC-TGGGACTTGAGTTCTCTTGAAAGGATATTTTCCTTAGGCTACCATACTTTCTGATCACTTCAGCTCTTCTGTGCACTCTATGGAGTATGTGCCAAAGATACCCCATAGAGTATGTGAGGTGACACAG-ATGTGGGTCTCATAG----GTGGTATACACAGCCATGAGTACACTGTCAGGTTTCTGCCATCTGACTGGCTAACAGTGTCCTCCAGCATTCTCCCCTTAGAA-TCCTAATCATAAGGATTAAGCAAAAAGTGAGACCTCAAGGGTAGTTTGGTCAGGAAGCATGGAATACACGTACTGTTCATGTAGATAGAGACCTATATGTGGTTAAAATTTCA--TCTGTAAAGACAGGGGCGCTAT--TGCAGATGTTCCACTCCCTAAT-------------------------ATAAAGCATAGC--CAGATCCTGT-----CCTCTTAgccaggcttcatgctaagcacattgctaggagtgtctcattgaagtgtctcatccaagctttatcgagtaggtaaactaggtattacccctagtttacaggcaataaaaGCCAAAGTTAAGTAGTCACCTACATCATCGAGTTGAAAAAATGATCAAGATAGGATCAAAGGCCATAAATATGA-CCCTGAACTAATACTATAGCCACATATAGGTTCCCTTATTAATTAAATTAAATAGATTTTAGATGTATGTTCAG-CACCAAAACCAAGCACTTGGCTAAGATCCATTAGTGGTCAGTAAATGGCTCGATGGCAGCATGTTATCAT
s HiC_scaffold_1 112526147 1700 - 233722169 TTTAAATACATGACTTCTGAGGTTGCCCTGCATGTGGAATCACGGTTCCAGAAGGG---AGAAGAGGATAGAGATGCTCTTTTGGAAGATTT-ATGGACCAAACATATCATTTCTGC-TCACAtttattagagaaaatcaaagaaatgacCA-CTGCAAAGCCAGG------TAGGACATGGAGGAAAACCAGGAAGCCACATTCCAGCTCCTACAGAAGGATGAGCCTTGGTAGGCAGCTGGAAATCTCTGCCACACACTGTCTGTGGAAG---------TTTATTGCTGTAGTTACTTTTACCTCAAAAGATTCCTCACTGATCCAGTGGATCTAGAGTTCAAAGGACAAATTTTCATG--TTTGTGCAAGATTTTTCTTTGACTAAAGCATCTAGATCTTTTCAAAAC-ATGATATGTGATAGGAAATGGATGAGCCAAGAGCGTAGATGGCATCACCTAGTTGATAtagagagtgaaaaaaaaatactggggtGAGAC--CCAGCTGTCTATTAACCCAGATAACCCAGAAGGTTGCTTCTCACTAT----GAAAAGAACAGTTCAGACATCTTGATGACCTAGACTCTAGGTCCTAGAAGCACATTCTCATG-ATAAGAAGGCTCATGATGCAGTTGGAAGAACAAGTTTATAAACCACGCTAGCCCAAAAATT---TTTATGGGGAG---CTTCTGGATATAAAATGCAGACAGGActgtctttgcctttgttttctttctgtaaggCACTAACCTCGACACACAGCTGAAAAAAGTCCTGAGTAAAA-TGTGTTTCGCT-----TCCTGGTGAAGATATTTTATGTGGACACCTAGCAACCCAGATCCTGAAATAACTTAATGTGGGAAATACTCCAAATGGTGTCTGTTCTTTCCCCTCTTTCTTATTCTCACTCCTGAGGCTTCAGATTT--AAATTCTAACTTTTCTGTCTTCAATT-TTGTAAAGTCA--CCGTAAAGCTAATAACATAGGAACTCACTGGACCTTTC----CTAGGAATTTACCTTGGGAtatgaatttttttgaaaaagtatcCCCATTAGTC-ATGGTCTTTCCTCATAACTTTATC---------CATTGTGTGACATATGTACTGATGGC------TGAAGT-TGTG-GTTGACACAGTGCATGAGTCTCATAGATATATGACATATTGAATCATAGGCAGACTTTCAGGTGTCCTCCATCTGACTGACTAACAGTGTCCTCTAACACTTTCCTTTCAAAGTTCCCAGTCACAATGGCTGAGCAAATAGAAAACATGCAATGGCGATTTGTTCTGAAAACTTGGGATATGCACACTAAT----TACCTAGAGCCCTGCTTTT--TTTATAATTCAGTTCCACAAGGGTCACAGCCATATTGTGTACATATTACACTCTTTTACCCCTGTCATAATCTGTACTATGATAATAAAACATAGAAGTAGTTCTTGTTGCAATCTAGTTACCAGGCT-----------GTTTTGCTAGGggtatctcatttaa--tcctcaacaAAACtgtatcaggcaggca---cttgtagtgccattattttatatatgat-gAAGCTCAAGTTATATAGTCACCTGACTAAAGGAGTC-CAAAAATGATCCATCCAGGACCCAAGTCCAACAGTCTGATCCCTGAGCTGACA----------------------TTAATCATT--GTTGTAAGAACTTTGGATCTGTGTAGAGAAACCAAAGCCCAGCATATGGTTATTACttgtaagtgctcaataaatgg-ttATTATCACTATATCATCAT

a score=38656
s chr3           102365693 1004 + 160039680 AAAATGGTTCACTTAGTAAGA--TGCAGGGATTTCATAACAGAATAATTCCCAACCTCTCGGTGAATGATAGATAATTTTAGGAGGTTGTAGCCAGGATAAATGAAAGATCCAGGA--CCAAGTCCTTCACATGCTAAGCTGTAGGGCTTCACTAGCAGTCCTTTTTGGAGTCCCTTGGATAGCAACattaaattaaattaattaatt---actattatacatttttctttaataaaGATTACTCTTCCAGTATATAAATAATACAAAAATTTGGAAACTGCAGTAAAGTAGTAAGAAAAGAAATCAAGACAATTTTACTGTTTGACAGGCAATTTATTAACTTTTTTTTGTAATAAAATTGAGATTTTTTTAAATTT-------GATTTCCTGATAGCATGAGTGACCTTCAAATTCCCATGTACCTGAGTCACCAGA-TTTCTAAATCTGGTCCCTTTGACCAGGGGCACAGAGAGGGCCTATGATTGGCTGATGCTTAACCCT-GAGTCTCAGGGGTACAGTAAGATAGATACTGGCAGGGCAGTGGCCAGCCAGGCTTCTCTGGACAGGATGACAGAGGCCTTGCTATCTCAGGGAAAAAATGCTCAGCACTGAGCCAGTATTCTGCACAAGGGTCGACCCAGTCCAGAAGGAAGTTTTCCTGGGCCCCGTTCCCACTCTCGTGGTCACATCACGGTGACACAGCAGGAAGCTGCGCCTCCCCAGAGCCCAGGTCTCTCACAGGAAAGTGCTGTCAGGGGTTTCCACAT-GGCCATCAGTCCAGGCACGTGGGGTTAGCAGCAGCATTCCAGCCTGCACTGTTTATCCACAGGCTGGACTGGGGCCTCAGGACTGGGCTAGGGCACTTC-CTCCATGCC--ATTCTGATGCACTGCTGAAGCCTACTGTGGGG----ACAAATACCAGATCTGTGCTGAGCCTTACCAGACAGATTTCTTTGTGTTGATGTGAAAACCCACCTTTCAAGATGTTGCTAAAAATGACAGACATGAAGAAGTGtgt
s HiC_scaffold_1 112528717  996 - 233722169 AAGACAGTTCCATTATTAAGAAATGTAGGGGTTTTATGACACAGTAACAACTAAAAT---GCTGATATTCAGGCAATGTCTGGGGAACCTGactcagagaaataaaaggtccCATAAGTCAATCTTGTAGTATGCTAAGCTGTCAGGTTTCACTAGTAATATTTATACAAGTTCCTTGGATAGTGACATTAAATTGAATCTATTAATTGGCACTCTGATA-ATATTTCCTATATAAAGCCTACTTTTTCAATCTCAAAGTAATATGAGA-TTTGAATAatgcagcaaaataaaaagaagagaaatcaacATAGTTTTACTGTCTAA------AGATATGA---CATTTTTGTATTCTAATTgaggttttattcatttttttgttcgCCTTTTTGATAGCATGAGAGACCTTCAAATTCCCATGTACCTGACTCATCAAAATTTCTAAATCTGATCTGTTTGTCTTGGGACTCAG----GGTCTGCTATTGGTCAGTGCTCGCCCTTTGAGCCCCAAGGGTGCAATAAGACAGATCCTGGCAGTGCAGCAACCAGAGAGGCG-CTCTGGACAGGGTGACAGAGGCCT-GATATCTCAGAGAAAAG-CATTCAGCACTGAGCCAGTATTCTGGACAAGGGTCGATCCAGTCAAGAAGGAAGTTTTCCTGGGCCCAGTTCCCATCCTTGCTGTCACATTATAGTGACACAGCAGGAAGCAGACTCTCCCTAGAGCCCAGGTCTCTCACAGGAAAGTGTTGTCGGACGCTTCCACATGGGCCAGCGGTCCAGGCAATCGGGGTTAGCA-CAGCATTACCATTTGCGGTGTTGGTTCACAGGCTGGAATGCAGCTCCGAGACTGGGCCAAGGTCCTTCTCTTCAGACTTGATTTT----CCCTG-TGATGCTTGTGGTGGGACTGCAAGAAACCCAGCTTGAT-----GCCTTCCTAAAGAGATTTCCCAGTGGAAATCATGAGATGCCTCCTTTAAAATGTTACTAAAAATGATGGatcaggaaaaatatat

a score=23763
s chr3           102374083 1248 + 160039680 TGTGCTGACACTGACATATGCTTATAAGGGAAAGATTTTTCTGTTGTAGACACTATTAGG-CAATTTCTT--AGGTACTGCTGAACCATTCCACAATTTTCCATC-TTTTTTGTGGCTTCTTTCTTATGTCATACGTGAAGATATAAATTTTGTCTGACAGATACAAGTTTCCATTACATTTTCCTCAGGAATACATTTT---CTTCTAAATTTTAGCCAAGTTAATTTTTTTTTTTACTTCAAACATAGTAAGGGTTTAATAAACATGAACCATTATTAGTCAATCTTTGAAACAGTAGCATTTACAAATTTGTTTTGAACTATAACAacataccataaaattttaaggtgtgcaatttagtgacttcttaaaaaccttcacaaggttttgtaaccatcagtactgtctag--ttccagaa-----------cctcaaa---acaaattccatatgcatgagcca------ggcatccttctctccagggctcctggcaacacatacttcctgtctctgtgaatttgccc--------------------atgaaatcttacaatatttagcccctggt-tccggcttt---ttccacataatttaatgttatcaaggcccatctacatcatattatatatcagcacttcattacttttaatggatgaataatatcccattatacaatcataatactttgcatacccactgcatgaatatgccctgtt--aatctttttatcaaatgatac-atgcttgatttatttctgctctcaactattgtgaaaaatgatgcttcaagc-tctgcgtccaagtttttgtgttgacatgtctttggttttcatggacgtctgcctagatgttgacttgctgaagtggacgc-catgagcaattaatgaaagttctacttgccacacacacacatgttggtacgagctatggctgtctcttttgagtgtagctatcctagcaggtgagaagtgttgtcacacc-------------------ccttagtgactaataatgcttagtttattttca-------------cagatgc--attttctttggagaaatttctgttcaaatttgacttctcaattggattacttagttttgttgttgag--------------tagaaagagtctacata-----------------------------tttcagaatcagctctcttaccacatacataattatcaagaaattctttt--tgtagattgccttttacttttctggttggattctttagaccacaaaaaggttgagtattgagtgggatgca--------tttgttcttgtgc-----attgagtatcaaggac-atcatacaatacaagatcacaaagatttgtgcctat
s HiC_scaffold_1 112542934 1310 - 233722169 TATACCAATATGGACAAATTTTTATAAGG-AAAGTGTTTTCCACTGTAAATTGTTTCAAGACAATTTCCTGTAAGTA-----AAGTCATTCcaaaaatttccatcatttttggTAGCTTCTTCCTTATGTCAGATTTGCAGATGCAAGTTTTATCTGATGGATACTATTTTTTGTTAGGTTTTCCCCAGTAGGACATGTTATAATTTGGAGTTTTAAACAAAATCAGTTTTAGT-----TTCAGACATAGTCA--ACTTAATAAATGTTAACTAGTATTATGTACTCTCTGAAGC-----------CAATTTGTTTTTGAGATGTAATTACATACCATAGCATTTTCACATATGTAATTCAATA-----------------ACAAGATTT--GAACTATCACTACTATCTGGAATTCTGGAAAAACCAATAACTTTCAAAAGTAAAACTTCTATGCACATTAGCAACCATTCTGTTTCCTCTTCTTCAGGCCT--TGGCAATCActactttcctttcctctgaacTTTCCCATTGCGaacatttcaaatatataaaattatacaatataTGGCCTTTAgtgtctgaatttttattttagataatgtaGTGTTTTTCAGGTCCATCTATGCAATGGT---------------ATTATTTGTTATTACTGATTAATATTGATGTATATA-----------TTACATATCCTTTATATGAGTCTACCTTTCTACAGTTCCTTCATCAAATGATAagacatttgagttatttccacTTTGAACTATTACAAATGATTCTACTATAAACATTTGTGCACAAATGGTTGTGATG--CTGTTTTGAGTTTTCTTGAACATTTACCTAGATATGGAATTGTAGGAGTAAATTCTCAAGAGAAATATATGAGTTCCATTTTTGCCATTTAC-----TGTT----CAATCTCAATACTTGTATTTTGATTGCAGTCATCCTAGCAGATACGAAGTGATATCACACCATAGTTTTGCTTTGCATTACCTTAATGATGAATGATGTTGgatatcttttcatgtgcttcttGACTATTTGCAAATCTTTTACAGAggaatttctattaaaatttgaTTACTT-ATTGAAAGAGTTCTCATTATCATTgaatggttttttatttttagacaaggttTCCCTAAATTTATGACTTTCCTAAGTCTTATATAGTCTCTATATAAGCCCTC-TActggaaatataattttaaaatatcttctctcatgtttattatcttttactttcttggt---gTCCTTTGAAC--AAAAAAGTTTGTAATTTCAATTAAATTcaacatatattttatgtttgtgttataGATGTGATATCTAAAATGATTGTATGATCCAAGATCACAAAGATTTTTACCTAT

a score=72304
s chr3           102380059 4837 + 160039680 [encoded data, 5449 characters]
s HiC_scaffold_1 112550438 4710 - 233722169 [encoded data, 5449 characters]

a score=51562
s chr3           102385493 2389 + 160039680 AAGGAGTTCTGAGTGAGCAGAAGGCAGCACCCTTCCCAGCCCTGATGTTAAGCTCTG-TCTTTTCATGA-ATCCTTCTTATCCTC--TTCCT---------------------------ACTAAACCGAGGCCTGGAGCTTCATGCTCTGGGCCTGAACCCATCCCCACGCTAAC-TTGTCCAGGGATCACTTG-TTCATGCTCAGCTGCCCCGAAGAACTGAAAGAACAAAACTTTGAGGGATCAATCCTCTGGGACACAGCATT-AGAG------AGTGGGGACAGCTTGGTGTGTTGCATCACGTGACATCACCTCCTGTTATTTGAATGACTTAGGAATCTCTTTCTCAAATGGAGGGAGTCTAGTTTACCTTATAAAG---------AGGA----------------GTAGAGTTTCTGTTGCAGAACAGAGCTCTGCCAATGGCTGTTCTCATCATATATCAAAGCTCCATCAAATCCTCTCCAGAATGAAATTTCTCTCTCCATTCCCA----GTTCCCTGCTGCTTCCAATTACGAGGAGAAAATAATGACCCTTATTGCCTCTCTTAGAATAACTAAAGGCCATCCAACTTCAAACTATGTTTGAGGCTGATA---GAGAATAATTTATACAAGGGCACTGGATATGGAACTCTTTAGATAACTCTAGAGGAGTCAGCTATGGTGAGATCAAAGGTTACATGGTGAGAGAGGAAACAGCTTCCAGGAGAAATGAAATCAGCTCCAGCAACAAAGAGTCAAGCCCTGTGTCTCAAGGGGT--AGGTATCCCACCTTTTCCAATAAGAAGCTGAAACCTTTT------TTCTACCACTTAGCTGATATGCAGAGTGCTGGAGCTGTCCCAAACTTTCCATGCTACACA--ATGTACATTGTAGTCCATCTGTCCGTCTGCCCACTCATGTTTGTTTCCGGTATC--AGCTGACGGAATCTGAACTCAAGCTACATGTTGTGTTTGGCCAGTAGAAGTGTTTTAATATCCTCGCTTGACTGGGGCTATCTCAATGTTGGTGAGTTCTGTTATTTTGAATAGGATAAAGTGCTGCCCCAGGTTTCTGCATAGTCATAG--CAGAACATTTCAACTTTAAACTCGTGTTATCTACTGTAGGAAATTCTTGCTAAAATAACCACATCTGG-ACCTTCCTCTGAAGATTCCTGGAACTCTGACCAACTCTTGGACAAACTACACATATCAAAACACTTTTGGTTATGTTTCTCATCTATTATGGGAAAATCTGAAATCAGAGCATCTTCATTTTACCCTTCTTCCTGCATCTGGAATCCAGTACATCACCTGGGCAAGGATAGTGAAGATGTGATAGTTATTTTTCTCCAGATTTCTGTGATTTATATTTAAACCACAAAGGGTATGTTGCCGGACCCAAACAATGCAGTGTGGAACGGGTTCACTCCTCTGCAATCATTGTATTGCACTGTTTTGTATCCCATATCTGCCTGGTAATGTGGAAGCCCTA-GGATCCAAGGGTCTGCTACCCAATGCATGCTTAAAGGACTGATCATCTCGTAG-AGCAGCAGTGTGAAGGATGCAAACGAGGGGAGT---CAGTT---AATTGGAAAGCC-------------------GAGTAAACCTCCAGTCGAACTTCCTTATCTCCATTGTCACAGAACTGACCATGTCCCTCATAAACTTGGGCTTACCCTCGAAGCCAACAAGAACAATTCACACTG------TTCTGGCTTGAATTATCCATGTCAACTATTAT-ATGACCCCACATTTCCTGGACAAGTGAACAGTCACTTGGCTTGCGATACATGTTT---ATCTCTTAGGTTAG----GGGAACTCTG-GTTGAAACTTGACAACTTCAG---------------------------------------------------------------------GAAGAAGGGTCTGAAACATTGCTCCTCATCTATAATCCTGCTCTTCTTGATAGTCAGAGTAAAATGCTTGACTCTTTGAAG--TGTGGAAGAGAAAGTGAGGCT-CCTGGTGTCAGTAGTGAGAAGGAAT------AAGGGAAGTTTTAGAG-----CAGTGACAATTCGTGGTGCTTGCATCCAAATATTTGCTTCT-GTACCTTTACTTCCAGATGTTGACACCCAGATGTTCACTGGCATTTTACCACTTCTTT--ACCATAAAGTGTAATTGATTTAAAATACTGCTGACCCTACAGATTCGTATATACTTCAGAAGGAGTAAGTTTGCCAGACTCATTGTGAGATTTCTAGCACCAGGGATGATAAAGGTGGGGGGCCACAACAGTAAGAAAG--GGAAGAGGAAGTGAGATTAAAGCTGAGGTAGCACATGGTCTTCACTTGTGATTTCCTATTGGCTAACTCTGGCCCATA---TAGAAAGCATGAGGTTTCAGATATGAGAAGTGATGCCCCAGACCTAAGA-TCTAAAAGCTCCTTAATACAGGCAAGTTTGATGTATTTAACAAGTAA------GACACCTTACATTTGCCCCCT---CTCTGTTTATTGGCACATGGGAGTTTCTGATCTACAGCCAGTCAGACT
s HiC_scaffold_1 112555220 2482 - 233722169 AAGGAGTTCTGAATGATTGGAAGACAGTTTCCACCAGTGCTGTGCCCCTGAGGGCTGATCCCTGTTTGAGATCATTCTTATCACTGATTCCTTTacacaaaaagaggaaaagatgtgTAATGAAATCCTGCTCAAGAGCTTGAAGCTTTGGATGTGAGTCTCTTCAAGTGCCAACAGTGACCCTGGCTCATTTGGCCCATTCTCAAAGGTCCTGGAGGACTGGAAAGACCAAGACTTGAAGAAAATTTGCTTTAGAATACAATATTCAGAGGATATAAATGGGAA----TTGGTGTCTTG-ATCATG---------------------------------------------AAATAGAGGTAGTAGTATTTGCCttataaaactgttcaaaagaacaaatgaaacagCAATGTAAAGTGCCCAAT--AAAGTAGAACCGTGTCAGTTGTGGGTCTCTTCATATCTCAAAGATACATCAAATCTTTTCCAAAATGCAGT----CTCCACACACCCAACATGTCCCCTTATAC--ACGCTCAGGAGGAGAAAGC---GTCCATTATTGCCTTCCCTGACATACCCACAGATAATTCA-CCACATACTAAATTTGAGGCTGATGTTGGGAAATCATTCGTATGTGGGAGCTGGCCAGGACAAT-TTTGGATAGCTCAACAAGAAATGCTTTTTCTAAGGCCAAAAGTCACATGGTGGGGCAGGAAGAGCTTTTCAATGGACATGGGTTCAGCTC-AGTACAGAAAAACTCAGTCCCATGTTCCAAGAAGACAGGGAGTTCCACCTCTTCTAATAAGAAACTAAAACATCCTGTAACATTCTGCCACTTGGCTGCAGTACAGAGCACTTGAGTTGTCCAAAACTATCTATCCTACACATAGTATATATTG----CTGTCTGTCGTTCTGCCCACCCAtgtttgttttcagtgttttagCAGATTACATCTGAGTTCATGCTGTGTGTTATGTTTGGCACGAGGCAATATTTTAATATCCTTGTTTGACTGGAACTATCTCAATGTTGGTGAGTTTTGGTATTTTGAATAGGCTAAAGTATTGCCCCAGGTTTCTGCATAATTATAGCCCAGAACTGCTCAACTTTAAACTCGGATTTTTTACTCTACAAAACACTCCCTAAGGTAACCACATCTGGCATGTTCCCCTACAGGTTTCTAGGGCTCTGACCAACTCTTAGACAAAACACGCACATCAAAACACACTTGATCATCTATTTGACCTCTAATGTGGGTAGCTGAAACTAACAAG---------TACCCATGTCCCTAC--------------------CCT---------TAATAATGATGCAATAGTTGTTTTAATCAAAGTTTCAGAGATTTATATTCAATCCACAAAGGATGTGCTCACTCACTCAAACAATTTGAAgctaaat-ttttaattctttcacacATATTTTATTGTAC----------ACCATCTGTGCC-AGTGCTTCATGAGTGCTAGGGATACAAATGTGCAAGACTCTATTCTTGACTGAAGGTCTCACGAGCTAATAGAAGAGGCAACATTGAGGGGCTAAATGAAGGAAGTGACCAATCTGAAATAGGAAAGACTTCATGGGAAAAGGgtcaggatttcaaaacaagaagagtttCCCAATTTTCAGC-TCACAGAATTCACTACTCCCTTCATGAACTCTGGATTATCTTAGCCTCCAATGAGAATAAATCACACTGTGACATTTCTGGTTTCCATTATCAGGGTAAACTATTAGAATGACCCTAAACTTACTAGATAATTGAATAGTCGCTGATTTTATGATATATCTCTTAAATCTCTTAAATCAGCAAAAGGAACTCTATGTTGAAATTTGACAACCTCAGCACTTTAATGTCAGCCAATTCTATTAAACACCCATGTGTTCAAACTCTATAAACAGAagcattttggaaaaagaaatatcTGAAATCTTGCCTTTTATATATAACCTATCgcttttcaaaagtgaaaatggAGAGGTTGACtgtttaaaagttttgagtttaAATATGGAGCTGCCTGCTATCAAGGGTGGGGAGGGATTGAGACAATGGAAAATTAGCAGACTTTCAGATGTACTTTATG----TTTCCCCCAAA----TGCTTCTAATACCCATACCTCCACATGATGATACCTCAACTTTCATTGATAGGTTCTCATTTATTGCAATCTTAAGACTTAATCTATTTAAAACCTAGCTATTCCCATAGAAGCCTTTTTAcgttaggaaaaataaatgtgccATTCTTTC-------TTACTAGCA-CATGTGTGAAAGGGGT-TGTTGCTAAggtgggaagaagggaggaagagtgAGTAAGAAAATTGCTGAGAGAGTTCGGTTTTTTTACATGCAATCTGCTGCAGGCTAGGCCT-GCTCACAttttagaagacacaaaaaatcaCAAGGAAGAAATGAATTTCAAGACCTGGGACTTTGAAAAAGGCTGACAACTGGCAAATTCAATAGTTTCAAATACTAAGACCAGGACATCTTGCCCTTCTTCCTTTGCCTCAGTTTGTAATCACAGGAGAATTTGGAGTCTAGAACCAACCAGACT

a score=34061
s chr3           102412559 1380 + 160039680 ATCACTTCCACCTAAGGCTTCTCAAAACAGGTCCT----TCCTTCATGAAGGAAGATGG--TTTTAGGTCA-ATCAGCAACAGCAAAGTGGTGAT-CAGATGACAAGTTGCTGTGAGC----CATCCAGTAGAAGAGCCCTGACCTATAGAATAGACACAGACTGCCCAGACCTCAAACACATCCTCTTCTCCTGACCCGGGCCTTGGGCACATCCTCCCAACCCAATTTATAGTGAGAGGAAGTCACAGGACTTTCTGCTCCTTTGAGTCCTGGTTTCCCCTTGCAACTTT---CCACTCCCCTGAAACAGTGACTTTTAACAAGACTAGAAGCAAATATTTAATTTCAACATAATCCCCTAGGAATCAAGAAGAAATCTAACAGGTCTTCTTAATTCAATAATCAATTATCAGAAAATGTGCCTCTGACTAACACAGCTGATTTGCATATGGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTAAGAAGGAGTTAGCAAATATTTTCTGGATTTGTAAAATGGTTCTTAAGACACCCTGCTGAGTTGGTGTTTAATCCCTTCTCCCATAAATAGGATAAAAGGTCTTTGCAGTGTTTTCTCTTAAGTAAATAGGTTTTAGAACTGTGCC--TCCAGTGTCCCCAGGGTTCTTTTCATCTGT--CTGTGAATGACCCCAGCAGCTGGAATGAAGGCTAGCCCATCACACCTCAATGTCATACTTCCTGCCTTTTGTTTTCTCCAATCATGGACTTGATATTGTTTAAATAGTGCTCTGTATGTTTAATTTCCTTCTTTTCTCCACAAAGACCCAACAGGTTTTTGTTTTGTTTTGTTTTTTTAATCACTTTATCTGTCACAGTGGGCGCATAAAAGTGCCCTGGAGCTGAAATTGAACTCATGTCTTTATTTATACGGGTAAATATATAGTTAGACATTTTAATGCATGGCAATTTATTTCAATAGTTGACTACTTGGGCAGAAACGTATTTGTGTACA-TTTCATCCACACCATG-GCTTTGCCCT---------GCTG----ATAGGGGT---TGCTCATTGTGTGCAGAGTATGCACAGATGGCTCAGTAGAGAGCATGCACCTTTCAAGGTACGTG-GAGT-GAGTCTGTTCCTTTCATTTTGCAAGCTGCTCTGTTGGTGATGCTTTCTCTTCATCCCAGATCCCTGTCCAGGAGTCAAAGTCA-GAGTCAGAGGGGCATTTAGACACTACTTGACTTGACTATCCAGAGTTAGGAA----GCTCCCagtgttctccagcctcagatggcaacttccaatgataagatattgacctcttaaaagggcagaaagggcatttcattgtcattcatttctactagaaaattcccttatattgaatcaaggatgtctgttatgtaacttctacccactcgccctgccctttgggcccacaTGAGAGA
s HiC_scaffold_1 112583800 1498 - 233722169 ATCACTTCTACCTACAGCTTCTAAAAACAAATCCTCCTGTCCTTTGTTGAGAAAGACAGGATTTTTGTTTACATGAGTAATTGTAAAACCTTGAAATACACAACTGGCCACTGCCAACATTTCATCCATCAGA------------CAGTGGACAGAC-----TTGTCCAGGCCT-GGCCACGTCCTCCTCTCTTGACCAAGGC-------------------------------TGAGAGGAAG-----GGACTTGC--CATCCTCGTATTTTGTGTTCCCTCTGCTCTTCTTTCCTGCTCCACCTATGTGATCATTTTCAACAGGACAAGACACAAATACTTTAGGTCAACGTGATCCCTTAGACGTCAAAAACAAGTATAATAGATCCACTGAAGT--------GCTTTCCAGAAAATCTACCTCTGAATAGAACCGCTGATTTATATATGGCAAGAATAGTAGTACCTTGGATCATATATTTAATTTGCTGTGTGATTCTGGCCAAAATAACTGCGTTTATGCTCACGAGGGGAAGACAGCCACAGTTGTTTTGGTCACCTTCTGTgaagtttgcaaacagaagtgaaACTTTGCCAAATGCAAATTGTTCATAAATAAGAGCATATATGAATCAAAGTATTTCTGTAAAGAAGGAATTAGTGAATATTTCCTGAATGTTTAAAATG-TTCTTAAGGCAGTCAGATGAGTCAGTGTTTAATCTCTTTTCCCACAAATAGGAAGAAAGATCTTTATGGTGTTCTCTCTTAAGTAAATAGATTTGAAAACAGTGCCTATTTGGTGT-TCCAGCCTTCTTTTCAGCTGTCACTGTGAATGCACAGGGCAGCTGGGATGAAGGATAACACATCTCACCTCAACTTTGAATTTcctgccttttgttttcttgaatcaTAACCTTGGTGTTATTTAAATAGTGCtctgtgtatttaattttttttctctcgtCACAAAgaccaaataatttttta----------------aaatcacctcaTCTTTCACAACGG--CTATAAAAATGTTCTCAAGCTGAAATTCAACTGGTCTC-CTATTTAAAC-ACTGAACATCTATTTAAAGA-TTTAATATGCTATCATTTATATTATTGGCTTACTACTTGGGCAGAAACATACTTGTGTACATTTTTATCTACCTAATGTGCTTTGTGTTTAAAGATAAGCTACTACATAGTAGTAAGTGCTAATTGTG---------TGCACAGATGATTGGGCA-AAAACATGCATTTTCCAAGGTACATGTGAGTAAAGTtggctgttttctgttttcaggcTGTCCTGTGTGTGA----CTCTCCTCATCTCAGACCCATG----GAAGTCAAAGATATGTACAATTAGGACATCTCAGTATCATCTGTCCTGATTACCCCAGGTTAGGAAGCAGGCTACCAAAGTTTTCCAACCTCTATTTTGAGCTTTCAGTGCTAGGACACCGAGTTCTAAA------AGATAAGACAC----TTACCATCTCTAATTACTAGAAAAAT--CTTCCTTTGAGTCAAATATTTTCACCATCTAGTTCCCATCTACTTGTAGTGCCATTTGAacttacaaggaaaa

a score=26000
s chr3           102424214 2209 + 160039680 AGAAAAGAATGCAGGAGTCTGTTGCACTTCTTTGTCCACACACTCAATATCTTTGCAA-TTCTAACCACCAAGTAATTGCCCCCAGACCCTCTTCCCATCCTCAGTA-AATGAGATCCTCACAGGTTCTGCTTATTTATTTGCTCATTCAGCAAATAAGCATCAAATTGATGTGCTCATCTAGGTCCTGAGCCAGAAAACGACCA-------CCACCC---------TGCCTCTGACTTACTGA----------ACCTTTTATGTGTACTTGTGAGGATGCTCTTGGTTACATGTGT-CACGTGTTTATGACATCATGTCATAAACAGGATTTGGATCCAGAGGTGAAGTACCCACAGTGCATGGTCAACAGCTTATGTAAAAAAAGTCAAGAGAAGATTCTGTGAGAAACAGAGACTGTTTGGTGGGATGGAGTAGTGGGACTCTTAATATTGTCTCCTCCACAGTGCAGTGCTGGGAACAAGGTACATTTTATATTGGAGCCAATGACACAAAGGTGTGTCGTTAAAATCTGTATTGATTATTTTCTGGTTTATGCAcaaat---tc---------taattctgctattcagtacttag--aagttaattagcttttcagtgccttgttttccttagctgtaaagtggatataaagacatcgtctacatcataatgcacttggaaaaataagatgGTGCCTGGTATG-AACAGGCTGC-ATTCTTAATCATGCATTATGATGGTAAAATATTCAGAAAAATATTAGGATTTATGAGGGAGTAATTACATGCACTTATGACTACATAGCTAGAGGTAATGACTGCCAACATTTGGATAAATACTCTCTTTCCACATCTTGCAAAAAATCACATTGTGAACTCAAGGTGCTCTAGTAGCTGTTGTAAAGGATGGGCCTTTTATTGGAACTAATGAGTGGAGCTCCTTATATCATGCCCTTTCCTTTCCTTTCATGCAATGTGTTATAGAGTTGGATTAC-TACATGCTAATAATATAGCTATAATATTGCGGGTAATAAAAACCATGTTTGTTGGGTGTTTTGTTATTCATTCTAGGAATTCCATTCTGTAGACACTGTCACACTGAATCCTGGTGGTAGATGTTCTTTCCATCTT------TTTCTTAGGA-----AAAATGAGGATCAGAAAA-GTGGTATTATCACTGTATAGTAGCAGACCCCGCCTCTCCCTCCCCCCCCCCTCTTTTTATCTGTCTCGCTCTGTCTTTGTCTCTCTTGTTCTATAGAGATATTTATTCTCTGCCATATTGATATTAGC-CAATCATACAAATTAAGGGCAAGGAAACACGAGTGGAAGAAACACAAGCCACTTC-----AGAAATTGGCACCATTGGTCCTGTTGCTTAACTCTTAACT------------------AATGACCCTGGAAAGCAAGGCGGATATCA---------TTGTCCTGACAGATTCCACCCCCCTTACCCCCATGA-GCAGAACTTCTGAGCTGACAAGTCTCCAGACTGGTATCAGACAATGCTTGAATGGG-----------------TTGAAGTCACTGAAATGCTAGGATTACCTGTTGCTACAGCATTACCTGGCCTATACAGACTGAAGCAACACACTTGAAAAGATCCCCCAAAGGCACAGGATCA-TGACTGTCATAAATAGGATTTGGATCCAGTGGTGGATGACCCACAGTGCATGGTCAACAGCTTATGTAAGAAAGGTCAGGTAAAGATTCCATGGGAAATAGAGA---------CTATATTGACCA-TGGCCTCTGCTATCATATCATCCATCTTAAATGTGGTCCCAATCACATTATCTTTGAGGTTGTATGGCATTTGTCCAGATCTGCACATGTTGGTGGAA--AGACAATCAAAA-GAGGATCATCTTATGCACGGATGTGTGTGCTGCACATA----AGAGAATTTAAAAAGAGATCATAATAAACAGGAGGCAAGAGAAGCATGGGAAGGGAGGCTTGGGGAAAAAAGGAAGCATTAAATACAATGAGTTCAAACA--------------------------------------------------------------------------------------------------------------------TCTTTTCCTAGAAA------------------------------------AGGCGTTTAGTAATGAATATTTTAGAGTAAGTTGTGGGAGGCAAATCCTTGAATTGTTGGGACAT-AAGGTGATAAAATATGTAAGCCAGGTGGCTGAATGAAAGGCTTTAAGCACAGGCAT-GCTGAGCAGTT--------------------AAGGATGGCAACAAACAGAACACAGAGAACGTGACCTGCAGATTACAATGGACAAATCTGCATAGAGCCCCAAACTTCAGGAAGAGGCACATGAAGAACCCAAT-ACTGTAGGAAAGTCTGGGC-CACCTGCATCT
s HiC_scaffold_1 112587962 2258 - 233722169 aaaaaaaagagcagaagctAATAGT--CACTGAGTCCACCCACTAAATAGCTGTGCAAATTCTACCTACCAAGTAA------------CCTGtttggattttcattttaattagaaGTTCTgaagttctatttatttatttg----tttagccAATAGGTAGCAAGACGCTAAGCTATGCTAGGTCCTGAGTAAGGAAAAGACCATACTTATCTGCCTGTAAATAATTGTCTTTCATTTGCTGACTTGCAtcataatttgtgtgtgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaccctCTTGTAAGATGG--TAGGGCTTCTGGATGAACTATTTTCCATTC-----TGGCATCTGACATAA-----------------------------------------GGTG-------------------------------------TAGTACAATGCTTGGCATGAACTGTGTGAAAAACTGGGGTCATGAATATCATGCTATATCATCAagtaatgtatt--ttgttttctgactcATGCAAAAATGAGTCAGAAAACAATGACTCTGTCATTCATCATTTAGGCAAGTTACTTAAACTTTCTGTGCCCAGCTT-CTTTAACTGCAAGATGGGCAGAAGAATATC---TATATCATAATATATTGTGAGAATTAAGATGCGTACTGACATGTAATAAACTATTATTGCTAATAATATGCATTCATGGTAGAAAATCCAGGAGAGT--CAGAATCcatgaagaaataaat-----tactCATGACTTTACAGTTAGAGATAATCATCACCAATATGT----------------------TTATGTAATGTAAATCCTTCTGAA------GTGACTTAAAAGAC----TAAAAAGTG---CCTTTATTGAAAATACTGTGCAGAGATTTTCACAATGtgccctttatttttcctttatgcaaaatgctTTATAGTTAAATCACATACACTCTAGTATGTTTGATACTATATC-----TAATGAAGAC--------------ATTTTAACCTTAA-----------CCACTTTATACACACT----TAATGA---CTTGCCGCAA---CTCTTTGCAACTTACCAATTATCTTATGATAAGGAAAATAAGGTTCAGTGAATGTAATGCTACTGTTGTTCACTGGTattctctcttgctctcttcctctc-----------tctctcttgctctatCTTCCTTTCTCCAGGCATATAAA-------AGTCTCTGCCATATTGATATCATTGTGATTATATTAATTTTGGCCAATGAAATGTGATCAGA-GTAATACGTGTTACCTCtgaacagaaatttttaat-----ttcttgtgatTCACTTTCCACTTGATCTCTCCTCTGTTGTAGAGATTCTGGAAACCAGTGTAGATGTGGGAGGAGGATTGGTATTGA-----------------GCCATCATAATGGAAATCAGCTGTGCTATAGAGTTTCCAAATGCATATCAGGATTTCCTTGGATAAGAACTAAACATCTCTTATTTTAAGTCATTGAAATTTTAAGAGAATTTGTTATTGCAGCAAAATGTGGTCTAAATAGACTACTGAAGAGCACTC-AAAAGATTCCTTGAGAATATGGAGTTAATAATTTATGCAGCCAGGATTTAGATCTAGATCTGAATGACCCAT-GCTCACGTTCAATAGTACACCTAAG---GGTCAGGTGAAGATATTGTGAGAAATAAAGAATAGGGCAACTATAATAGCTGCTGGCTTAAGCTTTCCTAT--TCTACTTTGAATGTGGTAATGATAACATTGTCTTTGAAGTTATGTGGCGTTTCTCCAAATCTGCACATGATGGGGGCAGgggataaacaaaataataatcttATTATTTAAGGTAAATTATGTTTtagatatttcataaaaataaggaaaaagtcacattaaacatgtga-aagaaaagatTAGATAGCcaagatt---gaaaagaaaaagcattaaatagcatcaattttaaaaatgcctatatcttataatctaagcaactactttgaagataacaatatgcaatgtactaaccattgttaatcttttattattttattttgaaattctgtatcattgtttttattcttttttcttttaaaaaattaagtatttcaTATCAAAAATGCTTGTACAATGGAAGTTTTCAATAATAAATCCTTTGGAGTAATCTCTGAGAAGCAGATGCAAGGAATAATGGGAAACAAAGGTGAAAAGATTGGTAAATTGGG--------TGAAAGGAATTAAGCCCAGAAATGGTTGAACATCTAGCCAGGCCTACTGCTTAAAAAGGGTGG-GATAGACATGGTACAGA-AACAAAGTTTTCAAACTACAACTGCTAAAACAGTATAGAG-TCCATATTGCGGGAAGAAGTAGGGAAAGGTCTCCATAACTGTGGGAGGGTCCAGCCTCTCCTGCACCT

a score=37209
s chr3           102427006 2419 + 160039680 TTTTTTAAAACTGTAATAGAAGCTTATGGTTAT-TTCTACAGACTTCTTTCTCCAAGACACTGGATCTATTGATATTGACTATGACTCCCAAATTACT----------GAGAGAAGTCAAAGACAGCATCTCCTAAACCATTGCTAACCCATTACTACAATTTCATCGGCTTAGGTATTTCTTAAAGCCAA----------AACTTGAGTAA-------GGAAAATCCTCT---CTTAGGTCAA-----CAAAG--AGAAATGGCTGCAATGGCCTACTTCCTCCATCCCAGG----------------------CACTCTCCCCTTAGGGACAGATGTGATAGATGACAAATGAGGTGTTAATGGGTCCCACTAGACCAGAGTTCATAGGCATGTAGGACTCAGCCAAGGCTCTTGTCCAGAGAGAAATGTAGAGAATGGCCCTGGCCTTAGAGCATCATCTAAACAGAGTTG-TAGAGTGGCAATCATGTGCCCTCCAACCATGGCTTTGGCCAGG-TTCCAGTATCTTCTAGGGATGTCTCTAGGCTCTGTTCCTGAGAATTGGGTTCA-------TCCTCCCAAGGTCACCTTCACCATGGCT----------------------------------------ATTTCAAACCTGC---TTAATTCTTTATA------------TAAAATATTTGTA---------------------------------------------------------------ATT-----------------------------------------------------------------------------------------------------AACAAACTATTCACATGGTCAAGTTGTACAGATCAGTTTAAGAATTTCTCTTATTTCCTGATATCTCAAATT----AATTCTCAAGCGCTAAAGCTTAGCACACCCAAAAA---GTTC-CACTGTACCTTTTCTT--TGGGAAAATAATTATATTAGACAGGGCTTTCTTTACAATGTGTTTTGTTATTTTGGTAGTGCTGCTTACAAAACTATTTTTCT--TTTATCACCCTCACGTAGCTATA-----ATAAAGAAAGACCTGTGCATACAGAAGTCTAGTTATTATT--CTATCTTGGTG---------ACAGCCTTAGTTTCCAGGGACAAGATGTAGGCCTCCAATCAGAAGCTTAATGACATCAGGTATTCCCAGTTAAGAGTCAAGATTTGTCTTAAGTCAAAGTTCTTGT-CCTTCCCGTTCAGATCTCAGTACTTGTCTGGCTTTCTTACAAAAGGAAAGC-ATCTACTTCTGTACAGGAAGGAAGTACATCGAGTCCATGGTCATCCATCCAGTCAACACTTGTCAATGCTGCATGTTGGCCTGGTGTTAAACAGAAAA--GACTCAAATTCAAGTCATGCTTCCTGTT---GAGGGGGACCATGAACTTGGACTTGGACAGAATATGCTTAGAAT-TTTGGCTCAGAAGCTATTAT----------AAacttaacctccctaaattcatgttctctcatttctaaaatgtggacaag---agcacccatctagtggggtgcacatgaatatttaatgagtcgacata------------------------------------------------------------------aggagttaaagt-----------ggtgattggcactcactaagatc-----------tcTAAAACAAGTCTATCTGAAATGCCACTATATTC-----TTTTTCCTGAGAGGCATCAGCCTCTCTGCAAG-CTACCTAGTTTTGTCTGTTCATTTCATCATTCACAGTGACTGTTTCTTC-----CATGGCTACATCATGGTGGCAGGATGGCTGCTGTGGAAGTCAGGGCCTCATGTTTCTTGGGTCTTGTCTACTTGGAGAAATAGATCAACC---------CATTTTT---TTAAAAA----AAGAAATGTTCTCAGGAAACCTGCTTT----CTTTTTGATCAAAGCTGGGTTTCACACTTATTGAACTAGTTAGTCATCTGTAA-GGATATGGAAATATTTTTGGAGTTGGGGG----------CCAATGAAAATTCTCAGCTGCCCCTCTTCTCTATATcctttcacactccctctcctctctccctaattccctgtctccttccctttctcccactcccttcttccTGTTCATTAGAACCCACAAGATTGAAGAGAATCAAATCTATTTAACACATTATGGTTCCAATAGATTTGTTGTTATATGAGACAATGATGGTA--AGCATGAATGTCAAAA-------------GTTCTCTCA-----------GGAAGGAGCTGGG----AGGCAGAG---------CTCAGGCAAGAAAGCTGGCCTCATGAAAAGGACACAGAAGAAGAAA----------------------GTGGGC--CCCAGTCTCTTTCAGAAGCCAGAG-CAATGCCTGTCACTGCCCATTGTTATCCACCTGGGTATCCAAAGAGAGAGTTTTCTGCCTTCTAGGAGTCTGCCTGGCTCTGCCAGAAGAAACAATTGAAGAAAGCGCCCTTACATACAGAACCTAACCTTCGAGCTGG-------CTGATTTTAGACAACAGCTAAGGGTTGACATTGTAGAATGTG---TGAGAATCATAGTTTCCTCTTAAGCAATACCTTCTCCC----------TGTCCCTTCAGGACAAGCTCCCGCTATGCTTTGCTAAAGTGACCCAGAGATTTAACCACAGGCT--TGGTGAAGAAAACATTCCATAATTATAAACATCC----AAGGAAAGCAGCTTCCCCTCCCATGAATT-----GTTACAAAGGGGGAAATAATATCTCTCTAACAGGAAGGGGAAATGGCCTAGCAAACACCAACtgtgatggctagtgttgac
s HiC_scaffold_1 112590236 2842 - 233722169 tttttaaaaactacagtagAAGCCA--GGTTATCTTTTGTCAGTTTTATCCTTCATGATGAAAGATATATTAAGATTGAAAATGGCCTCTgagttatatattaaaaaaaaaaaaaactaaagctagtCTCTTCTTA-TTGTGACTAATGCATCAGCACAATCTGATAAAATAAGTTCTTTCTTGAAGGCaatcataaataaaacataaataaaaaggaagagggaTCTGCTGAACTAAGGTTCAGTACATAAAGTTGGAAATGTTTCCAGCTGTCTATTTTCTTGACTTCAGGACAGGGTATTTTAGTGTCAAGGCCCTCTCCCCTTAGGGATAGATGTGCTAGATGACAAATGAGGTGTTAACGGCTCCCCCTAGA-CAAAGTTCAAATGCATGCGGGTCTCTGCCAAGGCTCTTGTCCAGGGAGAACTACAAGAACAAGACTGGGTCTTGGTGCACCATTCAAACAGAAAGGACATAGTGCCAACTG-----CTGAGATCCTGGGCCAGGACCAGGCCTCCAGCCTCTTCCA----------CAAACTTCCTTCATGAGAATTCCTTTCATGACCATTCCTCTCATGGTCATTTCCACAATTGTTTCACTAGCACTGATTTGATCACTTTATCTAAGTATCACACACTTCAAATTAACAAGTAAATTATATAAACATGCAAAGGATTAAAACATTGGTATGAGCTAGGCATGGTGTCATGGAccggtaatcctagcacttgggaagctgaagtaggagaatcattgcaagttctaggtcagcctggactgtatcctgagttcaagtccagcctgaactatatagtgaaaccctgtctcaaaaaagctacacacacacacacacaagaaaaaatcACTGATATAATCAAGCTGTGCTAAGAATTGCAAGGTTGTTTACAATATCCTGAAATTCTAAACTAATAAATTCCCAGATGCCAAATTTAAACCTACTCAGAACAATGTTcatgcagtttcttttctcaatggaagataaaagaaatttaac-------taataaaaatgtgttttgacATTATGTTGGTAACTCATGTAAAAATAACTTGCTTCTTCATCAGCCT------GCTATATGAGCATAAAGACAGTCTCAAATATTCAAAGATTTGGTTAGAATTCCCTAACTTGGTGGTCAAAAGCACAGCTTTGGTTTGCAGGAACTGAGAGCAAGGCACCAACTGGTGTCATACTGGCATTA-GTCTCCTCAGTTAAAAGTCAAAATTTGTTTCCAGTCAAATGTCTTGTGCTTTCCCAAACAAATCTCATTACTTCACTG-----ctcacaaaaagaaaactaccaaatttTGTGCTGATTGCACATATAAAGAttctacattcattcaacaaatatgtatTACACATCATTCTCTGCTGACCTTGTGCTAAAAATAATAGGGACCCAAAGCCAAATCA--CATATTGTTTCAGATAGGTAGTATGAATCTAGAGTTGCACAGAATCTGGTTAGAGTATCTGGTTTAATTTTTGTTACCTTTGTTCTAAAACTTAACTTTCCTAAACAtttgttctcttctgtttaaaATATGGGCAATCACAGTATTCATCTAATAGAAc-cacataaatatttaatgagtggacataacaaaacagcatctGCGCATTACaagttctcaataaatatttgctcttttatttttattttatgggaaaactTAAAATGAGAAAGCGGAGGTAATTTAC---TAATAAGAACCAGAGTTAGAACCTAAATTAAGTCTACCTAAAACTATACTATGTTCTGGTTTTCTTCCTGAGAAAAATCAACATCTTGGAAGGCCCAcgtgtttttgtcttttcatttcaccATTTAC-GTGGCTGTTTCATCCTATACCTGCTCATGTTGTGGTTGTAAAGGTGCTATTATAGAA-CCAGGCCTGTATTCTTCTTGA-----------TTGGAAAAATGGATTGATCCTATCCATGCATCTTTCActtaaaaagaagaggaaatttttCCAGTAAATTTGTCCTGCACTTCTTTGGTCAGAACTAGGCCTGATGCCTAGTA----AGTCGGTCATTTGCAAGGGGGATGGAAGTGTCCTTGGAGTTTTGGGACCATTTGGACCATTGGAGTGTTTAAGAAagacttctttcct---tcctttc--------------------------------ttccttcc----------ttcctttcttcatatTCATTATCACCTTTAAGAGTGAAGC-AATGAAAT-TGCTTAACAATTTATGGTTCGA--------GCTGTGATGGGCAAC--TGATTATAACAGAATGGATGATAAAACTGAAACTGTGCTGTTCCCACAAGTGAAGATGTGGAAGGAGCCAAAGTACAGGTGGAGGGGACCAGCCTCGAGTGAGGAAGTGGCCCTC-----AGAGACAAGGAGGGACAAATGTCCTGACTACGCATGTAACTATAGCCATCTCGGTTCCATTCAGAAGCCCCAGCCAAGGCCATCCACTATACCATTTGAGCTACATTTTCTTCTGAAGGACAAGTTTTTTG------------CTGCCTCTCCCTGCCACAAGAAACTACTGAAAAATGTGTCTCTAACCTCATTGTTAGCACTTCCAGCTGGGtcggatttgtttttgtttttgaatcaaGATTTGACATTGTAGAACGTATTCTAAGA--CACACTTCCTCTTTGGATAATGCCTTCTTTCCTACAATCAGTGGCTCTTCATAACAAGCCCTGGCACTGTTTTGGAAAGATGGCTCAGAGATTTAACCACTGGCTTGTGTTGCAAGAGAAATTACACAGTTATCAAAGTTCCATTAAGGAAAGCAAATTTCTCCCCAAGAAATTTATTGATTGCAAAGGAAACAGCAGTATCTTTACAGCTGAAAAAAAACCTGACCTAT--AACAGTTACCCTACTGATTACAGTTAAC

a score=83062
s chr3           102445021 2773 + 160039680 AGCCTAGACGGATGAGCAGACATGACTCAAAATATCTTT-AAAGCATTGTTTGAAATCTTGTTAATATAATTCTTCTCACATCATGCATACAAAATAAATTTCTTTGCACACATGGGGTAGATGTCACTCTTAGGTCCAGGAAGCTCAGAAGTGCCAATGGACTCCCACCTGGCAGAGGCATCTCTGCAGACATAGTCTTGGGCTCTGTTTCTGCCATGTTCATAGGCCAAGTCTGTCTGAAGAAGCCAGAGTTTCCTATGTAGACTTTCCCCCCT--CCTTTAAATAAGTATTTTTCCAAGCGTGGAATTCAGAGGAGAGGTCACTTTTCTGCCTGGGAATCTATCTGCTTTCTTTTTATGGTCATTTCTATATTGAGAAGGTCCCAGGTCCAGTCAGTCATGAAGGATCCTGGTAACGTTTCCCCGAGCAATTACCCCCATAGTCACTTGCTA-GTTATCACCTCGACTGTCCTTCAGAGACTACATTCTTCCAGCTCTCTTCAACCACTGGTAATTCTTCAACCCCTGATAATTCTGCTGGAGTGGGAAAAAATATCAAATGATAAACTATTTGTTTCTTCTTCGTATTCTTATCTATGCAACTCTGGTCCAAGGCTGGACTGATCTGTTTTTCATCCATCTATCTGGAGAGGTTACAGCAGGATGGACAGAAGTTTGGACATAACGGTCTGGGAAAACTTCTCTCGTAAACCTGACTTGACACATCTGTCCTGCTGGCAGCTGGAGGCC-ACCAGGGTTCCAGCTGGCTCCTTGC--CTTCTAAGAGACTCAGTCAGACAAAGAGCTCCCTAAAGCCCTTCACTCAGACTGAAGAAGGCATTGTGCCCAAGACAGCCACAGGAAAGCTGGCATACA------------GTAAGCCCAAA-----TGCAATATTTCAGGTGCACAAGGAAGACCCATGCATCCAACATTGAGGACAACATTGGAG-------ATTACCCCAGCCTTAGC-TCTTCTGAACAACATTCTCTTACAACCACAAGCCACAGAGCCTTCactttcatc-ttggtctggttctgctagctgagctgatacaacataaatct-aaGTTGCCAATGTCCAGATTCCAGAGTAAGTACGTTCTTTTTTTTTTTTTTCTTTTTTCATGGAAGATTGAGCCTAGAACACCCTGTACTTCACTGTGGAGCTGAAGCACTCTATCATTACGAACTTTAAAAGGAACTCCACCATTGTCTAGAATGATTCTCTTGTCCT--GTTCTCACCCCCTG------------------------TATTTGTGGTTCAGGCTG-------------ATGGCCACGTGGAAGA---------GGTTCAAGCCA------CCACTGGGTAAGATTTCAGGCTTCT-TCAAGGGTCTTTGTCATGTGTGTGATGCTGCAGTACTGAAGGAGTTTCCAGGATTGACAGGTGCAGCGCATTCTCTTGATGTATTTGGGTCCTCAGTGG-GGTGGTATAATAGCTATTGCATGGATGTTACTTCAGCTCCTTGGTCCTGCAGCTAGCAGCACATACCACCCACTGGTGGAGGAACAAAACATCCCCAGAAAGAGCTGAGAGTCTTAACTTGCCTTT---CTCTATACTTTTTCTGGAAGGTTCCAGAAG-ATGCTAGAAGGAGGGAGGGCTGCAGGCCTCTGACTGCCGTAGGACTGGCCTCCACTTGATGAGGGTAATAATCCATGGAACTCAGTGATA-TTTATTTCTATTTATTCTTTATATTTTAATGGAATTCTGTGGTCCAGACTTGGTTTCAGGCTCCATGCTCCCAGAGTCAGCTAAAGTAC-AAGGGGGAAAAGAAAGTAGTGGGGGAAATTAGATTCTTGATTTGTGTCCAGATGGTCCTAGCCGAAAATAGACTCAGAGATTCTCACTGCAGACTTGCCTCTGGTATGACACTCCCCTCCCCCTTCATCTGAGGTCTTCTTGGTAAGAGA------GGGAATGGGAAAAGCACTGGGAACATTCTTTTCTCTTTTTCCCAGCCGTGTA--TTAAAAGGCCCGTGCAGGTTCCAGTCCAGGGCTTCTGTGGAACACCAAGAGCTGCAGTGTCCACAATGGCCTAGGGTGATGTGATTTTAAC-------------CAACTTG----GCCTGAAGGCC---------------------ATCCCAGG-------CGTGTGTGGCAGCAGGGGAGCACAGCAGTAGCTGGCCCTGCAGTG-AGGGTTC--ATTCAGGCCTGCCACCAGCACAGTGGCCCACTCACATTCCCCT-GGGCATCCTATTCCAGAAGCTTAAAAGCAAGGAGACAAG-----------------ATCTGTCCCAGCCAGCACTTTCCAGGTAGAGCAACATCT-CACAGAGCTACTCACT---------CAGGAGAAGGGTAC-----GGCTTTTCTTGTCCCTGCCAGAATATCAGTTTAGAAGCAAAAGGATCAGGGCCATCTGTGAGGACAGCACAGGGAGTCTTGAGGGCATTTGCCCACTAGA-----AAAACTGGA---AGTTCATGGCTCACCTCAAATTCTACAAGATATGAACTCGTTAACAAAAAAATCAATCTGACACCTAGAGTCTAGCATCAGTCACTTGAAGGCCACACACCCTTTTGGACAATCACTATCACAGAATTCCCTTTTGGACAAAGACTATCACAGAATTCCTGTCATTTCTTGATGCTTCTTTGTTGGAAACTACATCCATGCTAGATATCACACAGGGTAGATGTCTGCCCTAAAGTCTAAGATACCCTCCTCTGACGGACAATGTAACTTTTGGTCTTGGATGCCAGTAAAATAAAGAGTGGTCAGGTGAAAAGTACTTTAAAAAAAAGAAAGAAAGAAATTCCCCTAAGTCTTTTACAGTTGGATTTCCTTTCTAATGTGTGATCAGCCTTGGAGGAt
s HiC_scaffold_1 112594485 2790 - 233722169 AATCTAGATGAGTGAGCCAGAATCATTCAATGTGTTTTTCAAATGATTTGTTACAACCTTGCTAATATGAC------AATATTATAAATGTGCAATAGATTTCTCCACA-------------TGCCACACTCAGGTCAGTGGAGCTTAGAAGAGGCTATAGCCTCACACCCAGCTA--GCA-CTGTACAACCACATTCATGGGCTCTATTTTCATCATGTTCCTAGGGCAAGTCT-TCTAAACAAGCCAAATTTTGTtgtgtagatttttttctctttcctttaaataaGTGTTTTTCCAAGCATGGAATTCAGAAAAGAGGTCACTTTTCTGCATGGGAATATGTCTGCTTTCTTTTTATGGTCATTTCTATATCAAGAAGGTCTCAGGTCCAGTAAACCATGAGGTATTTTGGTAAAGCTCCCCTGAGCTTGAGTCCTTATGTTCACTTGCTGTGTTGTCACCTCTAGTCTCATTCAGAGGCCACACCTTT-------------------------TGTTCAGTCCCTGATTTTTCTGCTCAAGTAG--AAAAATATCTAATGATACaccatttgtttcttctttg-agtCTTATCTGTGAAGCTCTGGTCCAAGACTTGACTGGTCTGGTTTTCATCCATCTAACTATAGAGGTTACAGCAGGATGGACAGAAGTTTGGACAAAGCAGTCTGGGAAAACTTTTCCCATAAACCTGACTTGATACATCTGTCCTGCTGGCAGCCAGAGGCCAACTAGACTTTCAGCTGGCTCTCTGCCTCTTCTGAGAGGCTTACTCAGATTAGGAGTTCCCTAGTGTCCAACACTCTGGCAG-AGCAAGTATCCTTCCCAAGACTATCTC-TGAAGGCTGAC-CACATCCTTGGCCCTGGTGATCACAAACAGTTTGCACCCTAGCAAGGTCACAAGGAAGTTCTAGATAGTccacaataagaaaacaaatggagAAGTCAAATTGTTCCAGCCCTTGCTTCCTGAGAGCATCATTCTCCCAAAAACATAAGCCTTC---CCTTCACTTTCGTCACTGTTCTGGTTCTGTTAGCTGAATCAAGAGAACATATATCTGAAGTTCTCAATGTCCAGACTCCTGAATAAATATGTTCACT------------TTTTTAAGCAGAAGGTCTAGCCTAGaactttttgtatttcattttcaagCCAAAGTCCTTTAGTATCAATGAC--TGAAGGAAATCTCTCTGTGCTCCTCAGT--TTCACTGGTTTGAAGTCCCCACCCACAAAAAAAATGTCAAAGGAATCCACACTATTAATATTTCAGGGTGCCAAACCAAAGAACTGgccaggaagaagaagagaaaatagtGCAGGCAAGGCAAGGAACTGGGTGATAATTTAGGTCTGTATCAAGGTACTCTGTCACTTGGGTAATGCTTCTTGGCCAAGAGAGTTTCCAGCACTCACAAGACCAG---------TTAAT-CACATTGGTACTTACTGGAAGTTGGACAACAACCATCCTGTGA--TTCGATTTAGACTCTTGGTCTTGGGGTTCACAGCATATAGCTCCACCT----AAGGTTCAAGCCAGCACCAAAAAGG---GGGGCTCTCATTCTGTCCTTTCCCTCCTTACATTTT----GGTGCACCAGAAATATCCTCAAA----GAAGGTCTCTGGGGCCTTGGCTGCCATAAGA-------GCTATAGGTGAAGGAAATAATCTATGGAATTcagtgacattttctttttgtttattctttgtattttaatagaATTCTGTGGCTCAGACTTGGTTT-AGGTTCTGTGCTCTCAGAGTCAGCTAAAGTACAAAAGGGGCGGGGGGAGTAATGGGAAAAATTAGATTCTTGATTTGTGTCCAGATGGTACTGGACAAAAATAGATTCAGAGATTCTCACTGCAAATTTGCCTCTGGTATGAAGCTCCCCACCCCCTTCACTTAAGGTCTTTGTGGTAGAAGAGGGAATGGGAATGGGAAAAATACTGGGaacattaatatttctttttcccagccatatattttaaaaggcttGCACAGGTTCCAGTTGAAGGCTTTTGTGGAACAAGAGGATTTGCCACACACAGAGAGGCCTGGGATGATGTGATTTTAACTTGAAAGAGGTCTTTGCTTGGCCAGCCTGAAGTCCAGAGGGAGCCTGTGTGTCACAATAGCAGGGTGAACCAGTGTGTAACAGTAGGGAAGCTCAA-AGCAGATGGTCCAAGGATGAAGGGTTCCACCTTAGCCCTGCCACCAGCAGAGCACTTGGCCTACACTCCCCTCTAGTGCCATGCTCAAGAAACTCAAATTAAAGACAACAGGTCTTTATGGGCCTGGGTTTCTGGTTCTGTCAGCACT---------AAGCGGCACCCATTCACACCTGCGCACTTTTCTTCTGCTAGGGGAGGATCCCACAGAGCTCCCTTAGCACCTGCTGGGAGGCCAG-TTAGAAATCAAAGGTCTGAGGTCCTATATGAAAATTCTCCAGGGAGACTTGAGGCCATGCATCTGCCAGAAATGCAAAACTTGAGAGATTTAATGGTTCATTTCAGATTCCACATGGCACAATC---TTcataacaaaaccaaagcaacCCAGGGATTCAACCA--AGCCAGCTAAAGCTC---TACCTTCT-----AATCCTTGT------ATCC---------CAAAAATTGT-GCAGAATATCCATCATTCCTTGATG----TTCACTGTAAGTCTTATCCATG--AGTCACCATG-AAAATATAGGCCT--CCTAAAGTTCAGGACCCTTTCCACAGAAAAACAGGTCAGTGGGTTCACTCAGATGCT-GTGAAGTCAGTAGTGGCCAGGTAGAaggtacttttaaaataatg----------------caatacTTTTACAATTGAGTTTCCTTCCTATTGTGTAA--AGCCTCAATGAAT

a score=15526
s chr3           102451378 1224 + 160039680 AGATACATTTCCCAGTTCTACTGCTAATGATATTTTTTGTCCAAGTTTCTGAACTTTACTCTTCTCAGCTACAAAACAAGGTAATTA-------------CGTTGCTTCTATTT-----------------CCATGTTGGAAAAAAAAACAACCA-----AAAAAAGACAAAAATCAAATTTGTTCAACATCATAGATGTCAGAGAAGGAGC-----CATGGTTCGAATT---------TGCAC-------TGCCGATTTCTAGGCCATGGATGATCCTGATGTGTGATGGAAGAAGGAAAAAGCCAAGTATTTCCAAGTGTTT------CTGTCAGATGCTGCTT-AGAAAGGATGAGCACATAGGGCATTTGCTGCAGa---agtattgttattctctcatgacagatgcataaaagaaaactctgagaagcaaagctgcttgc----ctaagcatcctcgggtgagttagaacctgaactcgGGGTTGACC---------------------ACCACCTGTTACATCATCATTTGGCTCACATCAAGTCCACGGTCAAAAGCCTCCCATGTTCTCCATCTACCCTGGAAACAAAACTACCAGTATCTGCCAAAGGGACTGG--TCTTG------------CACTGAAATGACTGATACAATTTGATATCTTGACTGATAACACACAAACCACCCTGCAAAGTTGTACTATCTGGATGAAAAGCATGGCTTCCCAGAACCACATTCTAGACATCAAAATTTTAGACATCAAACTGCTTAACTCAATTTTTCTtctccct------------------------------------ctccctctccctctccc-----tctccctctccctctccccctccccctccccctccccctccccctccccctcccccctctctct---ttctctctttcttcctG--------TCTAATTCTAGACATTCTG-AAGACAGCAAGTAATGCCA--ACCTTAGCAAGACAAGCCCATGGAACCA-TTATGA--CCCAGAATAAACAAAGTATATGGAGACCTGTTATGAAAGACAC--TATAGGAAGATCT---GGGAAATGAAAACAAATTACGAATCTAAGCCTTCTTCCAGCTTTCTCATAGGA-CAATTGGTGGAGTTACCATCTAGCAAAGAAGCAAGTGTACAAAGCAACGTAAGAC-------TCTGATTCAGCATGTTCCAATGTGGGGCACACCTGCACTTGGGAGGGAGGGATGGACAGGGGCTGGAGGAAAAAGCAACGGCTTTAATGCTGGAACAAATGGAAACTCTTCATGGGTGGGGCTCAAACACACTAGTCTCCAAGATAGATATCTCtgttagttaagactcagctacaagcaaacaaaggacccag
s HiC_scaffold_1 112602287 1321 - 233722169 AGATAGATT-CCCAATCCACTTACTAATCAGTGATATTGTCCAAGATTTTAAACCTTATTTTTGTTATCTATAAAAAATGGATATTAGGATGAATGTGATAGttacatatatctaaaatgtaccagaaAAATCTGattgggaaaaaaagcaaaaataaatgaaaaagtggaTAATTATATTATTTCGACCACATTGG-------GAAAAAGCATATACATGCTCAGAGTTACAGTGAGTGGCACCAGGTTGTACTGATTTCTAGGACA--ATTTGTCCTAACACATTATagtagagaaaggaaaggagctcTTTAC---TGTTTGCTTATTTATCAGGCACTGTTTCAGGAACTTTGAATACTTACGATATTTACTGTGGAGTAAATATTATTATTCCCAGTTTGCatataaagaaactaaaattcaGAGAAGTAAAACAACTAACTAGTCCAAGTTTCCGCCATTGAGTTGGGATTGAAACTCAGGTCTAACTGACTTAAAAACCCAACTTTTTACCACCTGTCGCATTTTCATGTTGTTCACACTAACTCCAAGGTTAGAAGCCATTCAGGCTTCCCATCCACTCTGAAAACAAGATCAACAATGTCCGCCAAA--AACTGAATTCCTACAGCAAAGCGCCCACCTGAGTAATTGCCACAGTTTTAGCTATTG---------------ACAACCCAGCAAGGTTAGACTATTTTggccaggggc-tggaggtttagctcggcggcataagcacctgccttgcaagcaggcagtcg-tgagttcgatccctggtaccgctaaaaaggaaaaagacaaaaaacaaaacaaacaaaaaaacacactaTTTTGGCCAAAGGTGTGACTATGCAGCACTGAGT----------------------------------------TCTAGATTATCAAATTCAGACTGCACAAAGTTTTCATTCCACACAGTCCGAAAAACAGCAGATAATATAATTATCTTTATGAGACAC-TGTATGGAACCATTTGCGACTCCCAAAATACTCAAAGTATATGAAGATTTATCATGAAAGTCATAGTATAGGGAAACctggaggaaaatgaaaacagctt---AGTCTAAACCTTTTCACAATCTTTCTATATGAGTAATTATTTGAGCTACTTCCTAGC-TAGAAGTGTGTACCCGAAGCAATTTAAGACTCAAAATTCTGAATCGTAATGTTCCAGCATTAAGCATACCTGTGCtttaggggaaagaaagaaagtagaataGAGAACAACAAAACAGCTTTAGTCCTCGAACAAATGGAAACTTGCATCAAATAAGGCTGAAAGATACTGCTCTCTGAGAATGTCCTTTGCCTTAGTCACTGTCCTGTCACAGG--GACATGATACCCAG

a score=155427
s chr3           102457299 8869 + 160039680 [encoded data, 10309 characters]
s HiC_scaffold_1 112612109 9510 - 233722169 [encoded data, 10309 characters]

a score=4604
s chr3           102467172 156 + 160039680 AAAAACTAGCAAGAACTGTGCATAAAATAGACA---------CTGGTGACTGGGGGAGTGTGTCTGAGCAGTCAGGGATGAAGATATGACTGGTATCTAGAAATTAGGCCAGAACACCTGGAGGAAGGAGCGTGGAGGGG---------------AGGCAGAGGCAGGCCAGGAGGTCGG
s HiC_scaffold_1 112622084 180 - 233722169 AAGGACTAAGGAACATCTTGCACATAATGGACATTCGAAATTCTGATGACTGAGGGCATGAGCATGAGAGGTCAGAGTCGAAGATCTGGCTAGAATCAGCAAAATAGAATGGAATACCTGACAGACTGAGTGTGGAAGAGTTGTGGAAAGGCCCAGGCCTGAGGCAGGCAGGGGAATCAG

a score=154765
s chr3           102467289 9040 + 160039680 [encoded data, 10157 characters]
s HiC_scaffold_1 112623359 9109 - 233722169 [encoded data, 10157 characters]

a score=158568
s chr3           102477295 8911 + 160039680 [encoded data, 9855 characters]
s HiC_scaffold_1 112632458 9027 - 233722169 [encoded data, 9855 characters]

a score=86901
s chr3           102487819 5029 + 160039680 [encoded data, 5780 characters]
s HiC_scaffold_1 112642264 5283 - 233722169 [encoded data, 5780 characters]

a score=43890
s chr3           102493394 1631 + 160039680 ACCATCCACAAGAAGCATTGTACCCAGAGGTT------AATTTTTAAGGACAGACCCAGTGTTCAATTAGAACCTGGGACACAGCTCTTGAGAAAAGGAACAGCACAAATGGCTCATCGTGTGATTGACAAGGGGGGCGGCAGCTGAATTGCGTCAGTAGTCAGGGCTGTCTGCGGCGACCTTTC-TTGGGCTTGAACATGCACAGCCAAG--CTCTGGGGAAAGAGTCAGAAGTAGATGTAATGGGAGAGTTGATTGGATGTGAGCAGCCAAGGTCAAAGGGTCTGCTCACAAAGGGGGACGGTCGTGTTATTTGCCTGTCACAGAACCGTGTAGACAAACCACAGTGAGTCAGCCACGCGAGGAGTTCTCTACCCCCTGACCAATTCTGCTCCATTCCACAAGAGTTAGACAGCCCAGTCCCTCTATTTTTGAATCACTCCTGTCTGCTTGTGTGATGGT---GGGGGTTCCCGCTGGGCCATCATTGGGGCT--TACATCCAGTGTTGGGGGCG------CAGTGCTAT--CAGGACTTCCCAGTTAAATGGATCCTTCGGAAGGAGGA------------GATTTATACAAAACTCAGGGTTGT--GAGGAGCTAG------------TGTACCGGGAATCATTTTACAAACGCATCTTAAACTCAAAGCTTCTTGTAAAGAAAACAATAGAACTTAGTTCTGCATTCAACCCTTTCCTCGGGCTCAAATACTCACATAGAAATAATTCACACGCTGTGTCCTTGTCTCTTTACATTTTCTCCTGATA-CAATAGAACGCTTTTCTAGCCCCCAGGTCACCATCGTATATTTGGGGACAGATTTATCGTTTAATAAAACCCTTGGGCATCTGGAAGACTTGTTTCAAAACTGGATAAGAAAAAGAAAAAAAAGAAAAAAATATATACATTGGAAAGGTAAATGAagag------agagagagagacagagagagaATGTTAAATTAGGTAAAAAGCTTGATATGATGGGTACTTTGGCTTAG-----CTGAGTGGACCGCTGCCCAC---------------------------CCCAGAAGCTCACCAGAATCGAAGCCACTGCAGAT--ACAGAACAACAACCAGCAATTGGCT------------GGGGTCTGAGGCCAGCTGTCTGCTGAGAACACATCAAGCCCAATTGAGTGGTTTAGGACAAATGACATTTAAAAAATAAAAATACAAGCCCAGTGGGACTATTAAGAAAAAAACTTGTCTAGAATTTTTAAAAATATACCTCAAGGACCCAAATAGTCACAACGGGCTAAAGGAGAACCCTTTAAAAC-------CAGAGAAGTCACTTACTAAAGCTGC----ATGAGACAAGAAAAGCACGTGGGTCTGCTCTGCATACTGA-CTGGCTTAGAGGGGCAGACTCTCTCCCTC--TCCAGAAGATCCCAAGGCCGCAATTGTGCACGTACATCTATATTT-TCCCCCAAGCTCTGATCAGTGCAAGAAGCCA-TTTACTTGGATGATT-TAGATTAGTGTCTAAGTGAATGTTTTGATGTATTGATTCAAGTATGCATTGCCAATTTTTCATTACAGTAAAAGA---GACCCCATAGTGAAGTACGTTTGATTCCAAGCAAATGAAGTCTTACAGAGGCCC--CAGTGCCGGCTGGTGCATGGGGAGCTCTGAGCAATGAGTGCTGTCTCTAACACAGCAGTTCCTACATTTGTTTGACTA
s HiC_scaffold_1 112649112 1651 - 233722169 ATCAGCAGCAAGAAGCATTGTGTCTCAAGGCTCTGTGGATTTGTCTGAGCTACTCCCAGTGTTTCATTAGAATCTAG---ATGACTCCTGGGAAAAGAAAGAGCACAAACAGAGCTTTGTGTGATAGAGAAAATGGG----------------------------GATGTTTGTACTGACCTTTTGCCAGGCCCAAGTGTGCAGAGATGAGAGCTCTGGCGAAAGCAGCAGAAGCAAACGTGACCAAAGGGTTGCTCAGATCTGACCTACTAAGGTCACAGGTTCTGTCTTGGAACGGAGAT--TAATGCTACATCACTGCCACAGAACCATGTGGATGAATCACAGTGAGTCAGACACAACAAGATTTTTG---CTCCTATCTGATTCTGCTACACTTC--------TAGAGAACC--GTTTCTTGCCTATGGAATCACATCTATTTCTTTGTATGATGGCCTAGAGCCTCTCCACAATGCCAGC-TCAGGACTCGTGCCTCAGGCGCTGGTGAAGGGAAGACTATGCTGTACTGCGAGCCTCTTGATAACTGGCTTCTTTGGAAGGAATCCAGGTGCAGCTTGAGTTGTGAAAAATGCGAAGTTATATGTGGAGCTAGAACATGAAACAATGTAGTAGGAATCACTttacaaatttatctcaaaatCAAAGCTACTTGCACAAAGAG-------ATTGAGCTCTGCCTTCAACTTTTTCCTCAGgctgaaatatttaaatagaaataattcaCAAAATATGTCATTGTCTGCTTATATTTTCTCCTGAGAGCGACAGAACTGTACTCAACTCCCCAGGTCACCATCAGTTATTTTTAAACTACTGTCTCTTTTAATAAAACTCTTTGTCATTTGGAAGGTTTATTTCAAAAGTTgatcagtaaaagaaaaaataatgg--------taTATTTGACACATATATGAAAAATCTCTTAGTAAGGTAGACATACA----------------------------ATATGACAg-tatttttgcttttacctttttcGTGGGTCTGTGCCCAAGAATGATCCACGTCATTGGAAACTATGCCAGGAAACCCACCAAAATCAAAGCAAgtacagatttatagaaaaacaaacagcagcTGTCTCAGATCACACAGAGGGGCTGGGGCCAGAAGTCTGCTGAGAACTCATCAAACCCAATTGAGCAGTTCAGGGCAAAacacattcaaaaaataaaagtacaagcCCATTGGGAATATTAAG-AAAAGCCTtgtccagatttttaaaaaatatacacccAAAGCGCAAGCCAATATAACAAGCCAAAAA------CTGTAAACCAGAGCTGCAAAGAAGCCACTTAAGAAAGCTACTTAAATGAGGCATGAAGAATATCTGGACTATTCCTTCATACAGGCCTGGGTTAGAAGGATGGAACTTTTCCTTCTGTCTAGAAAATCTCCAAATTATAATTTTACAGGCTTTCTTACACTTGTTTTTAAAGCTGTGGTCAATTCAAGAAGGCATTTTCCTTGCATGATTACAGACTATTCCCAAAGTGAATGCCTTAGTATATTGATTAAAGTAT---TTCCAAATCttcagttaaagaaaaaaatctgtttccatGGTGAAATAAGTTGGATCTCAAATAAGTGAAATCTTCTTGGGGACTTGCAATACATACTGACACATGGAAAA--CTGGGTAATGAAAGCTCTTTGTGACTCAGCAGTTCCCAAATGTTTTTGACCA

a score=79107
s chr3           102496025 3354 + 160039680 CCACTTTCTGTTGTTCATTCACTGACTTCTTACATGAACATTTCT----TAGCTTCTACAAGCCAGATCCTGCCTAGACACCAAAACAAATAAAAAGAAGGAAATGTCAAAGTCCTGGCTTGATGGTAGCTGTTAGTGGGATGGGAGGGATGAACATGTATACAG-TATCTGCAGTATCATGTGATGCAGGCTTATCTGACTCCTT--CGTTTATAATCGAAGTGGTTTGCTGACTCTCCCAGTGCCTTTTATCC---CCTCCCCCATGTTGTCTATTCCTAAAGGCAAGACTTAGACTTTGTACTTGTCTAGTGTTCCCTCAGGTTCCTAACATGGAAT-GGCTAGATAATAAGACATCAAATGGGTACTCGTTGGTTGATTCAAGTCTAAACTACTGAACTGGATTAT-------------CTATTATTTTTTAAGTTTTGTAATGGTATGAGTCTTTCTCAAACATTGGTATAGTCCTGTGCCTGCAAGACAAAATT--ACCACCAAATTATTGAGTAATTCATTGGCTCTACTTTTCTAGGAGCCATCTTAATGCCACAAAAGTAACAAAATCAAAGCACGGTCCCTCCAGAGAGCAAGCCATGGCAAACGGAAGCAATTGCTCTCCTCCATGGA----CACAGCTACAGGGTTAAAAG--AGCACATAGTCAGCTTGACCTTGTAACCAGAGAACTGCCAAGTTTCTGACTTTACATATGGGCATCTTGGGAGTCAAGTGAACATTTAGCTATTCATTGTAGAATTTAGTACAGATTAGGGTTAGCCACAATTGGTAACACTTGGGGAGTTGTTAATTTCGTACTGGCAATTTCACTGTAAACTCCTTACATAAATTTCAGATTTGTGCTTGGCATTGTCATCCAGATTTTATGCACATTTATTTGATTTATATATGCTGGATGGTTTCTAATTGTAAGGCCATTA-------AGCACCTCTGATGCTTTAATAACTTGAGAATTCTTCAAAGCCACAAAAACTTAATTTCAGAAGTG-AAGGAGAGAGTGAATTTAGAGGGGACAATTTCCATTGGGTTCCCTCATGAGATGGC----ATTTATATTGtctgtgctactaacatctggggtcagatgattctacatagtaaagtgtctgctgggcattagtgg--ttctgtaatacccttagcacctacccactagacgccagcagcactcctgctacctgcttactgatatgaaagaaagtctccagacactgtacaatgtcccctggggtgggaagag-gttgggggaaatctcttttggttgactatcac-------AAAAGAAATCTTGGTCAATAAAGTTAGCTCTAGATGAGGAGT--GTGAAGTTTCATCCCATGGACAAGCCATTCGTTTGTGCTGAGGGAACAGAAAGCATTGTTTCAAATGCTTTAGAGCTGGACAAATC-----Tctttctagtctgtgtgactcagaacgagtatctatcttcctaactcag------tttcccaatctagatgaaagatgcaatgcctgcttc---acagCCTTCAAGCTGTAGTGCATTGTGCCCTGCAAGAACCCCCTAGAATGATGCCAGGGAAGTAGAGGGATTCGTTAGGTACTCAGGTAATGATGCCAGGGAAGTAGCAGGGATTCGTTAGGTACTCAGGTAATGATGCCAGGGAAGTAGCAGGAGTTCATTAGGTACTCAGGTTCCCTTTATTCTCCTGCTGCTCCCCCTCCCCATCTCTCCCTCCAGTCCTTTCCCTGATGTCTGGAATGAACACAGCCAAATTCTATGCCCTACAAATGTCTTGGTGGTTTATTTCCAATTTTCCCTCCTATAGAACAGATCTGCAGGAGCTAATATTATATCCAAACCTTATGTGAGCTTTGGAGAACAGAACAGCCTAAGTCAGCAATGGGTAAATGAAAGCCTGAGCCCACAGCTCTTTTCACTCACATACAAGAACTTTCTAATATAAGCAATACATCCACACACATTGTGACCCTTCTTCAATGGCTCATCCTGTACTCAACGCTATAAGGTTG-TAGCTTGCCTAAACAGAGG-------CACA--------------------AGTACTGT-----CCTCCACCCAAACCCATCTTTATGGGTCAAATGGACCTGGTTACTTACTCAGCAACATTGTCTGAGCCTTTGCAGAATGAAGCA------GCTAGGCGCCATGGGGAGAAGGCAAAAGGTGGAAACATATTTGGTGTAGCGCTGAGCCTGGGGAACCCAGAGAGAAGACATATGGAAAGGCTTATGAACCTTATTTTCATTATGAAGGCATTATAACAACGTTACCAGCCACTTGGAGAACGGGGGAGGGAGAGAGGGCGGGGTTCACCCAGAGATCTCACACTCAGTACAACTGTTTCCATTTATATATCGACTTCCAGGCCCGACTCCTATGTACATGTGATTT-CCTTGGCTGCCATGATCTCACACACCCTCTCCTAGGCTCT-----------TGACTCTGGACTAGATTACAAG---TGCCCCTTCCTGCTAGTTGTCCTCATAGTTCACATATTTAATGACTGCACAGATGCTCACAAAAAAAGATTTTCCACAAAGTAACTAACTATCCTTTGACTGAAGAATTCTTAGTGTCTGGTTATGCAATTCAGGATTTCTAGTTGTAGGAAAAAGAAAACAGAGTTACA---CTTCTCCCCTCTGAAGACAAAAAAATCTTCAAGATGAGGTTAGCAGGTTAAAAAAAATACAGACA--GACTATTGTTT-AAATATGAAATTAAAAAATTATCTTAGAATACATTGTTTGGATTATAAAAGCTAATCATGGAATATT--ATAATA------AAATACG--CATGTATGAAAATAAGAA----AGTCATAA------AATTCAACTATTAACT--TAGTTCTAGACTTTTCTTCAAGT------TTATCTCTTCTACATGTACCTATCTAAATTAAGTTTTATTATAACATTTCTAAAACTAGGGTCACTAAGTGTTAAGCTACGGAGCATATTAGTCT---ACAAGGCAGTTA-GTGGGCCGATCCATTCAG---------CAAAACAGTCTTGTTAGAGTGCAAAGAATGGGTGGTTGTGGGCTATCTCTTCCTCGAACTCTCGGCAGTCTTAG----CATTCTGTTGCAAGTC-GTCTGCTCACCCTCCCTGCCAACAGGACATCGCTAGCAACGCCA--TTCCATGGAATCTGGCAGGGCTGCCAGAATCTAAGG-------------AGTCTGTAAAACTCagccaaggtcaccttggacactccttggg----agggtccaggctgggttacagcattgtaagtccaacctgttcactttatctccagattgggaa-agggccatgttcttcaactgagcaccagatgaagtagttggcttgcagagagaccatgctg--cctaaaacatacaaattttttaattacaatatccgacagaatgaaggtttaatgggaactaactctaaaggaagaatgcat
s HiC_scaffold_1 112650902 3203 - 233722169 CTACTCTATTGAgattattcattcacttattaaGTAGACATTTGTGTGTTGGTTTCTCCAAGCCAGAGT-GACTTAGACACCAAGGCAAACACCAAGCAGAAAGGGTCTAGATTCCTACATAGTGGTAGTTGTTAAGGCAATGGCAGAGATAAACATGTACATAAATATC---AGCATTGCATGATAGAGTTTTC----ATTTCTTGCAACTTATACCCTAAATTCTTCACTAAATATTTTCTGAACATTCGTCTGAATTCCCCTCGTATTGT-TATGATTAAAACCAAATTTTGTACCTTATATTATTCTAGTATTCTCTGTGGTAGCTAGCTTGGGATTGGATACATCTTCCTTAATCTAATAGATactggttgattgatt-gattatagACAA---AACTGGATAATAATTGTTGactccttgatttctttttagcTTTGCAATTCTACAAGTCTTCCTCAAATACTGATACAATACCTTCGTTACCATCTTATAGTGAATCACAAAAGCAATGACTA-TTCGTTGACTAAAGTTTTCTAGGGGTTAACTCAATGCCAAAGAAGTAACAAAATTAACACATTTCCCCTCCAAATGAGAAgtcacaaaaaactaaaatattttattttttacttatagGCTCTCTGCTTAAGTGTTAGAATTTAAAATCTAGTGA-TTTGACCTTGAAATTGAAGAAGAGCCAAGTTTCTAATTTTACAA--GGGTATCCTGGGAATCAAGTGAATATTTAGCCATTCACTGTAGAATTCAATACAGATTAGGGTTAGCCACAATTGGTAACACTTGGGGAGTTGTTAATTTCTTGCTGGCAATCTCACTGTAAACTCTCTTCATAAATTTCAGATTTGAATTTGGCATTGTAGTCCAGATTTTATGCACATTTATTCGATTTACATATGCTTAGTGGTTCCTAATTGTACAATCAGTAAGCAAACAGCACCTCTGATGCTTTAAGTAGTTGAGAATTcttcagagcaaaaaaaaaaaaa------aattgtaagaagaAAGTGAATATACTAGAAATAAGTTACATTGAGTTCTGTTATGCTATGACTGGGTTTCTCAACCTCTGCGCTATTGAGATTT-TGGCCGGATCATTCTGTGTGGTGGGAGGTGCTCT-ACCATCTGAGGAAGTTTGT-ATATACTTTGCCTCTATATACTAGGTACTAATAGAACCCTTCTTATCTGCTTACAACACCAAAAGTA--TATCCAGATATCGCAAAATGTCCCCtggggcaaggagagagatggggGAACTATTCTCTCATTGAGAATGACTAATGATAAAAGACTTACTGGTGACTAAAGTCAGTTGTACACTAATGGTAAGTGAATTTTCATTCTGTGAATGATCCACTGGCATATGCACAGTGAATAGGAAGCTGTGTTTCCTGTCCTTTGGAACTAGATAACCCTGTGTTCTTTCTAACCTATGCGACTTGAGACAAGT---TATCCAACCACCTCAGAGTCTATTTCCTTACCAGTGCAGAAAG---AGTGCCTACCCCTATGTAGTCAT-AAGCAGAAATGAGCCATATGTTG--AAAATCTCCTGGTCTAATGCC--------------------------------------TACC----AAGTAGCAAGCATGTATTAAACATTC------------------------------------------CTGGTTCCCTTCCTCCTTctattcttcctcctcctcatctaccactttgcccctttccctaatatctgagatgaacacaacTGAATTAAATGTACTACAAATGGTTTGATGGTTTCTGTCCACTTTTTCCTACTATAGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTACCATTTTCCAAT-TCTTATTCTGTGTTCAACGTGGTAAGACTGTTCACTTGATTAAACAAAGGGACCATTCACAGGAGGTTGACCTTCTCAGTCAGGATTATGAATGCCTCCATCAGCACCCATTCTAGTCCATCAAATAGGCCTGATCACTT---------CAT---------CTCTGAAGAATAAAGTAACCTAGGTTAGGCACTGTGGTAGAACACTAACA--TAAAATCCCATTTGGTGTAGTACTAAATGTCAAGGATTTACAGAGAGTACATATGGAAAAGCTTATGAAccttattttcattataaaggcCTTATAAGAACATTACAAGCCATTTGGAGtatgagggagagaga------agagatcaCCCAAAGTTCTGACACTCAATACAactgttttcatttatatatttacttcCAGGCCTGATTCCTACATATATGTGATTTCCCTTGGCTACATTGATTTCACACATATTCTTCTCTAATCTATCCCCTCTACCCATTTTGTGTTAGATCACAAATATTGCCCCTTTTT-CTTATTGCCTTCACAGTTTTCATGTCTGATGATTGCATAGAAGTTC-CTGAAAAAGGCTTTCCATAAAGTAACTAACTGTCCTGTCACTGAAATGTTCTTGGCTTCTGATTTTGCAATTATGAA----TAATT-TAGTGAGGAAAATTCATACATACAGCTTTATTCCCTTCTTAAGATCA-------TCAAAAATAGGATTAGTAGGT---AAAAACTATGGATATTTGCTATAGTTTCAAATATATTattgtaaagtt-tttaaaaatacattattttgatcATAAAAGCTATTTGAGGATCATTGCACAATGTTTGATAAATACAGTaaagtataagaaataaaacatcacTCATAATTCTTTAATTTGACTACTAGCTAATATTCACTAAATTTCCTTCAGATGTTCCCCTCTCCTTTATAAGTGCATCTATCTACAATTAGGTTAATTAT----TTGTCAAAACTTGGCTTCCCAAATGAGCAGTTACACAGGGTATTGGCCTTACCTAAGGCAATCAGGTGAGCACGCCTGTCTAGTAATCATCACAAAGGAATCTTGTGAGAGTGCAAAGGATGTGTGGTTCCAGACTA------CCTGACACCTTCTGTAGACCTAGGACCCATTCACTTCCAAGCCAGTAGGCCTCTTTTGTCTACTAATC--------CTATCAAATGCAGCTTGGCTGATTTCAGGCAGGAC--CTGCATTCTAAGGCTAATCTGCAGAAGGCCTGTAAAGTGCAGCCAAAGCTACCTGGAAAACCCCTTAGGGAGAAGAGCACAG-------TGCCTCTCAGTGCACCCAACCAGCTCAGCTTTCTTACGTTGTGGGAACAGTTACTCCTCCTTCAGCTGTATACCAGATGAAGAAGCTGGTTTGCAAAGGAgccatgttgtttttaaaaatcaagaatttaCCAGCT---GTATCGTGCAGAATGAATGATTAGTGGGAACCAACTCTActtgaagaatgtat

a score=115448
s chr3           102499391 4709 + 160039680 [encoded data, 5140 characters]
s HiC_scaffold_1 112654617 4633 - 233722169 [encoded data, 5140 characters]

a score=40274
s chr3           102504513 1990 + 160039680 TCAAGGCTCgtgacggtgatg-ctggtatgatggtgatagtgatgctggtg-tggtcatggtggcaattctaagatgatggtggtgatgctgggatgactgtggtactgatgctggga--tgatcatggtggtgctgatgctgggatga-------tcatggtggtgctg--atgctgggatgatcatggtggtgctgatgctgAGATGATTTTGGTGCCAATGCTGGGGTGATCGTG--GATGGTGATAGTGGTGGTCACAACAGTAGGGCCACTAGAAATAATGCTCCCATGCTCTCTGAATCAGAAAAAGGGACTTTATTTACATAAATGCTGTGATAGGTTTAGAAAGTGGATGGAGAAAAGGGAATCACTTGGCTCATAGAACCTGATGGGCAAAAAGAACACAGAGAAAGTTTAGCACAGTTCTTTGTGTAGAGCCACCTCATGTGCCTGTT-GAGGTAACTCCTCTCCTGGGGACAGAGTGGGACAAAATAAAC--------------------ACA------CTCAGGCATACACTCTTCTCCTGGTTGGAAGATTCTGGAATCTTGTTGATATTTTGTTTGACTTTTTCTTTTATTCTTCATTTTTATTTGTttgttgttgttgttgttgttTAAGTCCTTAATCTATGTTTTGAGGGTGCAGAAATAAGGTCTG------------------------TGAGAAGAAGGGAAACTAGAAAC-------------------------------AGTTCAAAAATCATTCAAGCA----------CCCACCT-------------TCCTGAGACCTGA-----------------------------------------------------------------------------GTAACACTCCATAGCCCAGGCATGG-GGCATGTGT----GGAAGGCCTTCGAGGTGCAGTTCTCTTAGCAGACA--GGCCTGGTTCCAGGAATCTGGCTAAT-CACACAGAAAGGAGAGAGAG-GCCAACAAATGGTTTCCATTATCGTTGTACAGTCCCTACCAGGGTTC---ACATATGTGTTCTGGGCTTTCTCTTTTTTTTCCTCCTTTCCTGGGTTATAACTAAACAATGAAGCGATTGCCCATCTCGCTGGATTGCATAACAAAACTAGTGACCAGACTAGAGTACAGCCTTCTCCAGAGAAATACTGGACAAGTAAAATAAGCGGTCAGGAAAGAAGAAAGGGGGTTGTTTCGTACAGTACCTGTGTACACT--------------GTGAGGGCCAAACAAGGGCCTGTGTCCTAGTT-CCCAGCAGCATCCGTCGGCTCACAAACATGGTGTGCTCCTGAGTCGGCTCACAGACATGGTGTGCTCCTGTGTCGGCTCACAGACATGGTGTGCTCCTGTGTCAGCTCACATCATCAGAGTGCA-------------CAAGATTCAGAAGTTGTGGGTGGGGCCACATTTTATCTTCCAATATAATGTAAAAGAATGATTCCCT-------------CCAGAGCAG-TGTGTGAAGAGTTTTCTATTCTGTTCAATAAACATTCCTTAAATGCCTACCCCAGGACATCCCTGGGAATAAAAATACACCTCAGCTCTTAAGAAGTAGGTAATTCAACAGATGCCAAAATTTATCCCAAGCCTCT-AATGACTGAG-----------------AGAGCACGATTCTCTCTGGAACTTTCTCCTGTGGCTCACTTTCCCTCTAAGGCAGCAATTACCCCAGGCGAAGATGTTCCTGACCT----CACAGGCAAGTTCTGGCCATCACTCCAGGTCACCTTGTTCGGGGA-----GCTGCAGCCACGA-TGAAGCAGCTTCCTCCCACGGACTGGGACGAAGCTAGAGAAAAGGAATCATTTCAAAACCCAGTGTTTCTGTTTTCCACTCAGTGTCTCGACGGCAGGTGACTGACTGCGGCTCACTGCCACGCAGCTGCGAATACAGTTCTGCAATCTCTCAGTCCCTCTGAGTATGCAGGTGGCCAGCCTCTCCAGTCACAGCTGCGACAATAAGCCACAGTCCCCTACCCCTGCGAGAGGGCCAGCTAGAGACC-------TAGAATGGACACTGCATCATTTCTTTTATACACCCAGTTCTGCCCGTATTTCTCTGCTCTGCTTTGGCCAAGTGTCAATAATAATACTATAAAAAGACTGC-----ATAAAATT--CATTGGATTAACTAGATGTCGTACAGTGGGCTAAGTGTT
s HiC_scaffold_1 112659148 2162 - 233722169 TTAGAGCTAGTGATGGTGACGACGGGGATGGTAGTTGTGGTAATGATCATAACAGTGATGGTGGTACT-----GATGGTGGAAGTGGT-------TAACAGTGATGGTAATATGGGGAAATGTTAATGCTGCTGGTGGTAATGGGTGGAGACTGACTGGTGGTGGTGAGGGAATGTCAGGAGGA----GGTGGCTGTGGTGCtgagatgacaatgg---ccatg--gTGATGACTGCAATGTTGGTGGCAGTGGTGGCCACTGTGGTTTAACA--CAGTGATAATATTCCTATGCTCCATGGCTCTGACTCAGAGACTTGACTTCTATAAATACTGTGATCAATTAAAAAAGTAGACAGACAGAGGGAAAACACTTCGATCCCAGGACTTTATGGGCACGC-GTACACAGAAAATGTTTGGTACTGTTCTCTGTCAATAACTACCCCACCTgcattttagaagt--tttatattttagagaCAATACAGG-CAAAACAAACTTTACAACCAATACAACGGTACATGTTTGCCTAAGAATATACTGTTCTAAAGGTTGTAAAATTTGAGGATTTGCTTGAGATTTTGTTTG--TTCTactttga-----agtttttatttatgtatgctTTTTATCCTCAA--AAAGTtagaatttgtattttgagaataTAGAAAACAGGTCTGGACATGAGTGTGTGGACACAGTGCTGAGAAACAGCAAGGGGAGAACCCTTCTTACACAAACAAACAGGTTTaggttagaatttaaaaataactgaggCCAAAACACAGTCCCACAGGATGGGTGAGCAGTCCTGGGATCAAACATAACAGCAGGAGCCATGACTAGTGGCTGGGACCCAGAGAGATCTGGGCCAGTCAGTCAAATCCTGGTGACAGAAGGTGACACTCTTTAGACAGGACACAGCAGAATGAGTCCCTGGAAGGCCTTTGAGTTGTAGCTCCCTTCACAGACAAAGGCCTAGTTCCAGAAACTCGGCTGATTCACAAAGAAAGGAGCATTAGTGCTAACAAATGGTTTTCATTATCATCGTGCAGTCTCCACCCTCATTCTGTATGTGtgcattctgttttttct-ttctttttcatcttctcatGCCTTGTAACTAAACAATGAGGTGATTGCC-ATCCCAGTGGATTGCACAACATGCCCAAAGGCTGAGCTGGAGCATAGCCTCCTCCTAGGGAATTCAGGACAAGAAAAATAAGCACCCTGAAATTAAGGA-GGGGCTTGTTATGCACAACACCGGTGTATGCTTTTTAAGGCTTGTAATAAAGGTGGAAGGAGGGTCTGGATCTTGGTTGCTCAGCAGCACACCTGTCCCCACCACTGTGATAT--------------------------tgtcctcct-----------taaata----------------aaacccATATCACCAAAGCACAGGGAGCCTTTTTCCGTTATCTAGACATGTGGATTGGGACCACTTATTATTTCCCAGCACTACATAAAATAATGATCTACTTTGGTTGAATAAACTAGCACAGCTGTGGGAAGAGTTTTCAATTCTGCTCAATAAACATTCATTAAATGCCAACTCTAGGATAACCCCATGGATAAAAATATATCCAAAACCTCAGAAAGTTAATAATTCAGTGGGAGCCTAAAATTATCCTAATCCCCTGGATGACTGAGCATACGTTTGACCATGAGGAATGCCATCCATGTTGTA--TTCTCCTTGTGACTCACTTTCCCTCTGAAAAAG-AACTACCTCAAGCAAAGTTTCTATTGATTTATAGCGCTGATAAGTT-TAACCAGAGCTAGAGTTCACTGCCCTCAGCAAACATGGCTATAGCTGGAACTGGAGCAGCTTCCTCCTTCTGCCTG---------------AAATGGATCATTTCAAAAGCAAGTGTTTCAGTTTGTTACTCAGCATCT---TTGTTGGCAAATGATTGCAGATAATCGTTCCACAGCTGCAGAACATGAACTGAAGTTGCTCAGTCCCACTGAGCATGTGCAAAAGCAGTCATTCCAGTCACGACTGGGACACTGTG--ATGACTCCTTCCTGCTG-GAGAGAGCCTGATGGGGACCTGGGAGATAGACGGGAAACAGCA----CTGTTTTCTGCACCCAACTGTGACAGTAACTCCCTACCTGATTTTGGCCaaatatctttaataaaaatCAGTAAGGACAGCTACTAGTAACATTTATATAGTACCATCTACTTTCAGGACACTGAGCAAAATGCT

a score=93052
s chr3           102506954 3036 + 160039680 ATTACCCACAGCCTTCTGGGTCTCTGGAGACAGATGCACTCTGTGGCTCTTTTGTTAGTTCTGGAGTGAATTTCCTCAGTGGAGAGCCTTCCTTTTGTGCATATTGCTGTGGTCAAATAAGCCCTAAAAAGAGAAACCCAAGAAGATGGGAAATATTCTAGAACGTAAGTACATTAGAGTCAAGTGACCTCAACAG--ACAGCAGCTTTTCATCGCCTCTGATCTTTGCCCCTGAGATATTGT----GTTAGATGAGTCGGCTTAACAT-AGCTCATGGATGCACATCCAAGGGCCCTTCTCTAGTGTAAACC------ATTCACAACTTGGGACTGGAGTGTTGAGGCCAGACACAGGAAGTGACTGAAACGGCAGCCCACACCCCACCCCCAACACCAACAAACAAACCCAGGGAATCAATTCTTCATTTCCATCGCT-GTCTTAGCCTGGGGTAACTGGGGATCTTCATGTGTGACATGCCCGGGCAAAGCTGGC--GGTTATCTACTTCATGCCTTGAGTTGGATTCTCTGGGTGTGAAGCCAGCAGACAAGCCAGGGAATGTCAGTGCAGAGGAGTGAGGGGGTTCAAAAT-CAGAGGCGGCTGTCGCTCCGGAGTTGTGAGGAGGTGGGCACTGTGATGTGCTTGGTCCCAGGCACTTGTGAGTCCTGTTTTCTTGAA-ATGGGATGACT-AGGTGAGGTGATCCTTAGAGTGAACCCACAGT---GCAACTTAAACAGAAATGTCCCCAGC--ATGGACACTT--ACCCACTAAGGCAGCCTTTTGCTAGAATCCATACATCCAAGTCTCT-GGCTCCCTGC-TATCCTTCTCTGATTGAAGAAAAGGCTGTCTGGCCTTCAGAAACATCAGACAGCCCCGCCCCCTGTATCTCTTAAGCTGGGAT--CTTTCCAGGTCTTTC-TAGAGCTATGGATATTTAG-----CTTAATTCCTGGAGTTACATCTGACTTGCATTAGAGAGTCATGTGTTGTAACATTTCTTGCCCTACTGCTTGGAAAACATGCCACACACTGAGAGGAACAGGCTAGCTCGAGGAGAACTGAGGACGTGGGCCCCCATAAAGCAAATTGAATAAAGGGCCCCAGTCTAAGTTAACATTCGCTGGTACTGTTT-GTTCTCATTCACATCTTC---CAGGTTGTCATCTGCGATCTCCCGTGACCTGGAGAC------------TGTTACTATTCAATGTGAACTTCGACTCCAAGCGACC--AGAGTCCCCTTTATTCCAAGTAC-TGCTGTCTGTATATAGTTAGAAGCATGGGA----CAGACCAGGCAAAGACCAAAAGCATAGTTGAAATAGATCTTTTTCTTGTGGTTTAAGGATCAGCCAGTTGGAACCAAAGAGATGTTTTCTTAAGGTTGCAGAGAAGTTTGCAAAACTATTGGATTGTTTTTGGCACTCAAACACAGATTATAGATATATCATTAGCATTACCAAGCCAATGAGCTGGTCTATATGGATTCCTATTTAGCAATACATTCTTGTAAAGCTGTTCTTCCCTCAACTCTGTGTCATGGAAGGCTGCTTTGCCTTTAGATAGCTTA---TCTACAGCTCTAATGTCCTTGTAATTAGCCGTACTTTGAAAGCCTCTCTGTGGCATTGCACATTAGAGAGCTCATGAATTACTGCAGTCAGGTAAACACCATGCTGGCTGTGGGCAGCTGCACACCATAGAAGGCCACCGACAGTTACAGCAAATGCTCTTTCATTCCGAAGCTGAAGGGCAGCCAACCAC-AATGGCTTCTCCTTTGATCTGCTTGGCTCT--GGGAAAATGCCGCTGAGAGAGCATGTGTAATTTACGTCAACATCTCCCAACGAGCCATAGGACCGATTCTCTTTAAGAAATGTGACAAAACCCTTTAGAATTGTCAGCATCGGGCCGTTTGGTGGAAAAAGAATA--AGTTTTACTGAACCTTTATGTCTTCCTAAATCCTTGATGCCAGATGCACTATTTTCCAACTGGATCTGCCAAAAACACTAAATAGTTAAAAGACATCAAATCGTCTCCAAGTGGCCCAAACTGAAATTTGTTT---------AAAAGAAAAAGA-----------------ACAACAAAAGAACTCTTAGTCAGCAAACCTTACAGTCATATTTCTTTCTAGAAAATGACTGATTAGGCTAAGAATTAGAAAAACAGATTGACAGCATAAAAGACCTCCAGCTC-TTCTCCCTTTGTACACAGGCACAGCGTACGGAATGACAGACAGGGGGT----------AAAATTAA---------------------GAATGGCTATAGCAATGGAAATCACAATAGA------GCAGTACCAAAATTCA----------CTATACCCCAAG----GACA---TGATCTCAATGC--TAGACCTGAAATGAGATTTCCTCACCCAGAACTCCACCAGGT----------AGGAAGAGGGACATAGCT-TCCTGGAATCTTTGG-ACAATGTAAGTTGCTTTAGGGACTGGCTCGTGCTTCATTGGAGCACGTGACATG-------TAAGAGGTTCTTTAAGTCAACCGTCCCCAAATCTTTGAAGAAAAATAAAGTCAGCAA-ATATTCCTGAACTGTTTAGTATCAAGCCACC-----ATCACTCTAACATTGAAGAATTTTTTTAAAGTGGCCTGACA-AAGTCAAAAAGAAAATCTCCTATTCACAGATGT-GGCTTGTATCTAGACAGTGAGGG------------------------CTTGCAAATACAATTCCCCCCACCCCCATATCTCCTTGTTTTTTCATACGATGATTGCACCTGTATTTTATATTTTTCTAAGATATATTGATTTCTTGACAATGAATG-TCTCTTAGT---TGGCTCATCAAATGCACTGTCAAACTTCCTCCTCCTCCTGTGCAG-AGTGACT-TTGGAGCtggccttatatttggatctcccgggcagctttttggaaactcctagtgaacatgctgtgcctcaagccagtgaaattaggctccctggaggtgggacacgggcagcatggtgggtatgtaaagctggctt-ggtgagttggctatgtggccagggttgagagtcaTGGCTACAAAGGACCAGGGAGGGGGGAGGGGCAGTGGAAAGCAGAGACCAGCTGGCTAGAT---AGTCTGCAT---ATTCACGCATGAAGGACTTACAGGGATGTCTA
s HiC_scaffold_1 112661728 3130 - 233722169 ATTACCCAGAATGTTTGGGATCTCTGGAGACAGATGTACTCTGTGGGTCTCTTGTTAGCTCCGGAGTGAATTTCCTCAGTACAG---TTTTCTGTGGTTCAAGTTATCACGGTCAAACAAACCCTAACAGGAGAAACGCTAGAAGGTTGtaaatattctgaaatataattatatgaaaatcAAATGACTTTAGAAGGGACATCAGGTTTTAGTCTCCCCTGACCTTTCCTCCTAAGATAATGAAAGAGGAAGACGAAATTCCTGAATCTGAGTTCAAGAATGCCTGCCCCAGAGCCCTTCATTACAATTAACCTCTGAAATTCCCCATTTGGGACCAGGATGTTAAAGCCATACACAGGAGTTG-CCAAAATAGCA--------CAAAGCCCCCTGACTAACACACAT-----GGAAATAAACTCTTCAT--CCAGCTCTTATCTTAGCTGCTGATTACCTGGGATTTGTATATGCTGCATGCCTGGGCAAAGCTAGCTGAGTTATCTCTTTCATGCCTTGAGTCAAATTTTCTGGGTGTTAAGTCAGCAGACAAGC-AGGAAATGTCAGCACAGAGG-GTGAGGGAGATGACAATTCAGTGACAGCTGAATTTCCAGGTGTCTGCTG---TGTCCACTGTGATGTGTTTGGTGCCAGCTCCTTGTGA-TCGTGTTTTCTTGGATGCAGGGTGATTGAACTGCAGCGATTTTTGCAGTGAAACTGAAGTCCAGCTGCTCAAACAGAAATGGCCTCATCTCATGGACACTTTAACGAGTAAGGGTAGCATTTTACTGGATTTCCTTCATTTGGGTCCCTTGGCTCACTCCCTATCACTCCTTAATAGAAGGATAAG-----TGGCCTTTGA--------------------CTCTGTA-------AACCAGGATgttttttctggtcttttgcAGGGTTATGGATCTTTAGTTTGCCTTAATTTTTGAAGTTGCATCTGAATTGCATTATGGACTTAGGCATTGTAACATTTCTTGACCT--TGCTTGGAAAACATACCACACACTGAGAGGAAAAGGCTCACTCAAGAAGAGCTGAGGACATTTAATCCTATAAAGCAAATGGAATCAAGGGCTTGAATCTGAGTTAACATTCACTGgcactgttttattttcattcatgtcTTCAGCCCAGGTGCCATCCTAGATCTGCAAAGAC-TGGAGACCTCAATAGATGTTGTTATTGTCAAATGCAAAAGTTGACTCCAATCATCCTGCgagtcccatttgttcccaatcCCTGCTGTCTGCTCTGATCTTCAAGTATGGGAACAACAGGCCAGA-AAAGAGCAAATGCATAGCTGAAACAGATCTTTTTCTTGTGGTTTAAGGATCAGCCAGCTGGAACCAAGGAGATGTTTTCTTAGGATTGCAGAAAAGTTTGAAAACCTATTGGATTGTTTCTGGCACTGAAATGTAGATTATAGATATATCATTAGTATTAGTATGCTGACAGGTTATACTAGCAGAACTGTTATTTAGCAGTACATTCTTGCAAAAATATACTACCCACAACAC--TGCTGTGGAAGGTTGATTTGTGTTTGGGTATCTTCTCTTCTACCACATTAATGTCCTTATAATTATccatactttgaaaatttctccTTGGTGTTAGCTATTAAAGAGCTCATGAATTACTCCATTCAGATAAATATTACACAGATTACGGCCAGCCATATGCAAGAAAAGTCCACTCACTTTTGGAGCAAATG--CTTTCATACTGAAACTCA--GTCAGCCAACCACAAATAGATTCTTCTTGGA-CCGCCTATCTCTCAGGGGAAAT---GCTGAG-----TTTTGTAATTTAC-TCTGAATCTTCCAAAGAACCGTATCACCATTTCTCTTTAAGGAATGTAACAAAGCACTTTAGAATCATCAGCGTAGAAAAATTCAGT-CAAAAATAATACCAGTTTTGCT--AGTTTAATGCCTTTCTAAGTCCTTGGTACCAGATGTACCATTTTCCTACTGAATAAGCCAAAACCACTAAATAGTTAAAGCTCATCAAATCATctcaaagtgttcaaaactgaattttttttccaaagacagagagagagagagagagagagagagagagagagagagagagctcctaGTTAGCAAACTTCATGGTCATATTCCATATTAGAAAACTATtgattagaataaaaattaagaaaacagacTCACAACATAAcagatttcaaattctttttccctttatatATAGGCTCAAAGTAAGAGCTGACATATATATTATTCTACCTtcaacaatttatttatttatttatttttattttactggtaccagggatcgaactcacaaccgcatgcttgcaaggcaggcacttatgctgctgagctaaatccccagccctgacaatttatttttgatgctttACATTTCTAGTAAGCTTTCCCAACTC--AACTCTATCAGGTGAGAAGTAAAAAGAAGGAGGCTGCAGATGTCCTGACATCTTTGATGTAGTATAAGCTGCTCTTGGGAACAGTCATTGCTTTGTAGAACAACCAGGGATGAATAGGCCAAAAAGCTTTATGGGT----------CAAGTCTTT-AGTATTCAAAATGTCAGCAAGAGGTCCTTAGGCTTGTTAATACTTAGCCAACCAAATACTAGGCCAGCACCAAAGAA--CACTTATAGtatcatgaaagaagt--gaaaccaAATGTTGAATTCACAAGTGTCTATTTATATCTAGATGATTTGGGTAACAGCAACAGGGACAACATATCCTAGCAGGTATAA---ACCACAACCTCATACCTTTTTTGTTGTTCACAATGTGACCATATCTGCATTTTATGTTTGTATGAAAGGTATTAGCTTCTTGA-----AATGTTCTCTCAATTACTAGTTCATCAGAGCCAATGCTAAGTTTCCTATTGATCCTCCACAACAGCAGCTATCACCTTTGTCTTTATATTGGGGTCACTGAGGGAGCTGTAC-AAAATCCTGATTCCCCAGGCAGCACTCCAAACCAACAAAATCATGCTCCCTGGAAACAGGACACAGGCAGAA---GGAGTATGTAAATCTCCCCCAAAAGGGCCCAGAATGCAGCCAAAGTTAAAAGCCATTACTATAGAAGATTAG----------GAGACAGCAGAAATTGGGGACCAGTGAAGTAGATGAAATCCTCCATAAAATTCAAACATAAAGGACATGT-GGAATATTTA

a score=63320
s chr3           102512603 3950 + 160039680 [encoded data, 4512 characters]
s HiC_scaffold_1 112667320 4328 - 233722169 [encoded data, 4512 characters]

a score=275925
s chr3           102517044 13980 + 160039680 [encoded data, 15798 characters]
s HiC_scaffold_1 112674402 14398 - 233722169 [encoded data, 15798 characters]

a score=19878
s chr3           102543310 918 + 160039680 TTTTCTACCTTGAACATAGAAG--GAATCTTGTTCATTTTC-----TCCAAAGTTTAGAAAGTAAAGCTAAATAGGTGTTTGAGAGAT-----ATATTGATTCATAGAACTTTTTATTCCTTT-----TATTATCTTGATGAAAACTCAGTCTCTTGTCCTTATAGAATCACAGGCCTTTCTGGGAATCGTTCCACTGTCCACCAAGACATTCACAA--CTTAAGGTCAAGTCTCCTCCATGCCTCCTAAA--------------AGAATGGAGAAAGAAGTGAGCAAG--------------CCCCTGGGACTGCCTA---CTCTAAGGCTGTGCTTC----CTGTTGAAGAGGTTTTGTTTTTT-CTTAAGGAAATACAACCATTTCCAAAGAAAGCCTGTCTTGTTCTGGTTGTGAGTGATTCGTTGTGGTATATTATCCCTTCTGTCAAGCATTTAGCTCCCTAA---CCTCTAG-----------CTCTGAGTCTCCACGTGCTCCAGCACATGTCACACAAGCT--CCTCCACAGGGCCACCAGTGGCTTCAGAGCCTTGA-GTAA--TGGTGCACAGAAATAAACGCCATCCCCATGGGCTTTGTCCAGATCAACGTCAGCAGTGTCCTTTCTAGTCAACCCTCCCAAGGCTTTTGAGCCTGACTGAGCCTTTCCCTAGGGATGAGGCAGGGTCAGTGACAAAGCCAA-------ACTCTGGTGACTAGTGAGGCGAGTAGCTCCATATGACTTTGTGGCTGCTTGTTGGGGTAACTTTATCCCATCTGAGGGGATAGACTGTGGTGTCCCTGTCCCACATTGTGGGGCTTTGCCCTCACAGCTTGCAATCAC------------------------------AGAGCTTTGGCCAACAGAAAGTGTTCCTTCCCCTGATGAGTGTTCTTTTGTTTTAAGACTGTTTCAGCATGATCTGGGACCTTTC--ACCTGTCCCTGAACAGTGGGGGACTCATGGTGGGAGAGAGTGAAGAAAATGGCC
s HiC_scaffold_1 112699306 999 - 233722169 TCTCCAGCCATGAGCCCAGAAACTGAGTCTTGTTCCTCCTCACATCTCGCAGGTCTAGTAGATGG-GCTAAATAA----TTGGGAAATGAGCCAAATAGATTTACtaaattttctattcttttaataCTGTTGTTCCCAAGAAAATTCAGTCT----------TAAAAAGACAGGACTCCTCTGGCATTGTCCAGTTATC------ATTGTTCATAAATCTTGCATCTGACTCTCCTCCATGCCTTCTGGATCCATCCAACAGTGAGAAAGGGGAAAGG-GTAggcaaggaagaaggaagaaactcCCCAAATTGCCTAAGTCTCTAAGATGGTGTTTTTCTGCAGTCTGAGAGGTCTTGTTTTTGATTTAAGGAAACAAAGCAGTTTCcaaggaaaattaattttgttatggTTCAAAACCATTTAATTTGTGATATTGTTTCTTCTGCTGAGCTTTCAACTTTCTCAGCTCCTCTAAGGCTGGAGTCACTCCAAGGCTGTGTGTACTCTTTCGTGTGTAACACGGAATGACTCTAACGGAGTCGCCTCTGGCTGCAGAGCCTTGGCGTCACAtggttcacagaaataattcattgTCCCATGAGCTTTATCCAGATCGACGTCAACAGTGTCCTTGCAGATGGACTCTCTGATGCCTTTTAATC----GTGAGCCTTTCCCAGAGGAAAATGTAGGATCTGCGGCAAACACAACACAGCTATGCCCAAGGCTGCTGAGGTGAATATCTCTGCGTGACTCTGTGGCCAACAGTTGGGATTGCTTTATCAGATCTGAGGGAAAACCCAGTGGAATCCCCCTCA------GTGGTTCTCTATCCCCATGAGTTACAATCACTAAAACCTTTCTTCAAACTCCTACCAAGCTTGAGGTTAGCTAAAGGGAAAAATTTCTTTCACCTGATGGCCCTGCCCCTGCTTTAAAATGATTGTAAAAGTACCTGGGATCTTCTGGGGCTGCCCTAGAATGGTGGGGGATTCCCACTTGTGTAATGTGAGGGAAGTTGCC

a score=14389
s chr3           102547523 904 + 160039680 TTGTCACATTTCATACCTGCCTGTGTATTTGTATGGTTATTTCACTATTCCCTCTATGTTGATCCGTGAGGATAAATACCT-------TGTTTTGCCCTACATACATTTGTTCATTCCACACCTAGAC-CAGG---CACTAAGCAACGA----ATGAGTAAGTTAATGAAACTTGTTTTTACTCTGACACTTCAATACCAAGTGCAAGGG-------------TCAGAGTGCAGTATGTGGCTTGGCTAAAGGCAACTAACCAAATGCCTTAGGCTCAGTACAAGTCACACAGCTGACTCTCTTCACTTATGCTGCTGACACCAGGCAGACCAGTTTTGTAGTTTGCCAC---AATGGCAAGTAGCATTGGCTCGCAGAA----AAGAGggaaatgtaggaaacgtaggaaatgtaggaaatgtaggaaatgtaggCACGGAAAGCCAGCATCAAGGGCTGAGCTGAACCCTCAAGATGGAGGGAAAAGCTGCTCCATTTTGTTCACAGAATTGAATGGATGAAAGAGT--GGGGTGGGCTTGACAAGGAGAGGGAGGGAGCCACCTGAATCTAGGGCTACATGATTCAGAAATTGTAGGGCAAAGCAGTAGT-GCTTCCAACCCTGTCATCAATGTTGAGGCTGTGACCAAAGATGTATCACAA-AGAACAGAGGTACAATTTTTAAAATTCA-GAACTCTAGAGAAAGGCAGGTCACACCATTAGCTGTGTGGTCCTGAGATATTCGCTAGAAGGCTATGACTCTTCAGCACCCTTCCTACTGGTTAGTGGACAGACGAGCTAAGAG----------TTTTGTTATTTGGCAAAC------TTTCCCCAAACCCACGCATGTGCTGAAGTCTC--TGCCCTACAGAATGGTT--------------------------tccttaaaga-gaagttgagacgatgtcaatt-----attaggatcagtcctaatccaagacgatcagtgtcct
s HiC_scaffold_1 112709208 932 - 233722169 TTACTACATTTCATAATTATGCATGTGTTTCTGTGattatttccttctgtcttctatAATGATTTGTAAGTGCAAACACCTCATCTAATGTTTTACTCCAC---CACCCACCC---CCGTGCCTATACACAGGAGCCACTCAGTAATGATTGGATGAATAACTTAAT-AGGCTCGTTTTTACTGTAAGATTT-GACACCAAGTGCAATGAGAACCTTAGGGCATCAATTTAGACCACGTGCTTCTATTAAAAGCAACTAG--AAA---CTTGGGTACAAAGCTAGTCACAGAGCTAACTCTCCTCACTT--TCTACTG---CCAGCCAGACCAGCTCTGTATTTTCCTATTTTGGTGACACTTAGGACTGGCCCAAGGTATATTAATAGGCAAA---AAGAAGCATGCCCAAGGCA--------AGTGAATATGGTAACAGGGAGTGAGCAC---AGGATACAGTGAAAGTTCAAG------------GCTGTATCATCTCACCAGTACAGCAGAGCAGCCATAGGGACTGGGAGTAGG---GACCAAGAGACAAAGAGAATCCCAT--CTCTAGG-----------CATAAATTTTAAGCAGAGCCAGAAGTCAGTTCTAGTTCTTTCACCACTTTCtaggcagaaaacaaaaatgtaacacTATGGAATGAGGGTGGAATTACTAAAATTTATGATCTCAAGAAAAAGGCAGGTCGCACCATTAGTTCCATGATCCACTCAAATTTCATAGAATTTAATAAATCTTCAATATCCCTCTTTCTTCTTAAGGTATGGAAGAGccaaaggttttttttgtttttttttttttatgaattgaATATTTCCCCAAG--AATTTCTATGCTAAAGTCCCAATCCCCTGCCAAGTAACTCAGAATGTGACTACATTTAGATATGataattaaagaggaaattaaattaaaattagtttGTACATTAAGGTAAGCCCTAATCCAATATGACTAGTGtctt

a score=77692
s chr3           102576241 6899 + 160039680 [encoded data, 7815 characters]
s HiC_scaffold_1 112732608 7030 - 233722169 [encoded data, 7815 characters]

a score=7838
s chr3           102583552 453 + 160039680 AACTGATCTCCTTTCTCTTTCTTCCTTTCTTTTCAACTCATAAGCATATAGTTTAACTAGATAAGACAAAGACCCACATTCTTTTGCTCTAAGATAACATACACTAAATAGAATTCAAGTGGACAATGCTAAATTTAATAGCTTTTCCAATAGTAATAGTAAATCAAGTAAA-TAAAAGTTACATGCTT-AATATTCATGTCTTCAAAGCCCAAGGAAGCATCAAACCTTCAAATTTTCTGGGGTTAAGAAGG-TACAATCTGGTTTTTGGCCCGGTGAGACT-TGTGTCTTT-TCATCCACC----------AAACCCTATTTTCTCAGCCATATGAATACACAGGGTACCCTGGGCTAATTTCTA-AACCACTTCCTCCAGAACATACTCACCCTGATGACCACAGAGATGATGACTATAACCTTGAGTTTCCTTCATGAATCTAAAAAAATTCAAATCCTGGGATC
s HiC_scaffold_1 112739676 440 - 233722169 AGCTGTGTTTCTCtcctctgtgttttttctttctcataccTAGGTTCATAGTTCTACCATTTGGAATGAATGCTCACATCCCTCTGCTGTGTGATA-----CACT---TTCAACCACAGAGGACAATGTTAA-TTTAATAGTGTCTCTA-TGCTAACAATAAGTCACATCAACTGCTATTTATTTCCTTTGAGATTTCAGTATTAACAGT-----------TCAAATCCTTGAATGTTCTGGGGCTAAGAAAACTATGTCTTTCTGTTTGGCCTAAAGATACCGTAAGCCTTTCTCCCCCACCTCTTCTGCTCCAACCCCTACTGCTTAGCCCTATAAAGAGAC------TCATGGGAAGACTGCTGGAAAGACTTCT--CAGACTGCACCTACCCTGGTGCCCTTTGAGGTGTAAACTATAGCCTCTAGCTTTCTCCATGAATCTAAACTACTTCAAAACCTGGGGTC

a score=64183
s chr3           102595307 2644 + 160039680 AGTGGCCTGAGGTATATCATGAAATCTCCAGAAG---TGTTAGTCTGTGGGATTTCCTAAACAGACCTGAGCACAAAACTAA--------CCATCACTGACCCAGGATG---TGAATGACAGACACACTGGGACAAACTGGTTTAGAGCAAAGGAATTCTATCCTG-GGGCTGATCAGAGCCTATCTAACATGTATTGTACACTCTGGACACTTCTGAGGACAGGGAAAGAGATCACTTGGGCAGGATTAGAAAGGGCCGTCTGGCTAGCAGA-----ATTTAGAACT--------ATATCTAAGAAATTAACATGTTTTGTCTGAAAAAAGACTGGGCTTGGCAG---AAGAGCTGGGTGGTCCACAGAATGCCGGGG-CTTGATCATTGTAAtgtatatgttgttctccctgtcagtgcgataaaaattatctgagaaatcaattaagaagaaaagatttattttggctcccagtgtctaggttccagtccacagcaggtccaattactctggggtttacagtgaggcagaga--------atcatgggg------aatggaca--catggggagcaggctgctact----tcctcaccaccaggatgcaaacaaagagaaagggatgcaggaa---aagggtcaggtatataccaa-------aggcacacaccaaagacctgcttcct-----ttaaataaggtactggagcccgatcttagagcttAGGCAGTTTCATTGGAAGTTAGCCTCAAATTAGGCCTCAACCAATACCTCCAGGA-AAGATAAGAATCAATCCAGGAAGGAGAAAAAGCAGACC-------AAAGGGAAGGAGAGAGAAAACGGGAATGCAGGCTAAGGGTCAGGCCAGGCTAAGTGGCACCTGACTG---AGTACAGGCCATTCATCCCCCATCCAGGTAATCACTGTGAAC---AGCGAGTTAGAACAGGAGATGCCTACTTCTGTTAAAG--ATTCTGAGCAGCGAGTAGTCACAAACCAGgcagcagcagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagTCCTTCTTAGCCTGTCCCTG--------TCTGCCATAGACAATACGCATTCATGT--CATCCTTGAAAAAGAAAACCCAGGATTTCCCCAAGTCCCCTTCAATTCCCTTCTTTAGACTAATTGTTTAAGAATTTTCCCTGGCTTTGAATTTCTTCAGCCTTTGAATTCA----TCCAAGCTCTTCATTCT-----TAAGTGAGAAGTCCCGGGAACAGGGAATGGTACATCACAGTGGCAGAAGTCGACAGATTGTGTGTGGAAGGGCAGAACCCTGAACAAGATGCTCTAAGCTGCTCTTCCCACTTGTGTTCCTTTGTGTCC-CCATGACACCTACTAGAATGATCATGGCACCTACTCCAGGGATCAATCCCAGCCTGTG-TCTGTGAGTATTGGCCAAGGTGAATTGAGTCAATACCAATGTGTGAAGACCCGGTGCTGAATATTCTATTTAAATAGCAAAACTGGAAGGTAGGAGATGAATGTAGTTTCT-GCTCTGGTTAGAGGATGCAA---------------GGGCACAAAGAGGGGCTCCTAACTCGGGCATCTTCTTCAGGAGTGTGCTGACA-------TGAGCCCTGAGGT-----TGACCCCAGACACACCACCTCATAT-CTGAAGGGATGCAGAGGAAGGACTCTGGGACAGTTTGGTCCCTGGATGCCTATAAATAAAGCATAATTTTCAGTTGAAATATGGGCTATAGGTTTCTCCTTTCCTGGCATTTGGGAACTCTCTGAGGCCCCTAGAGTTGTGCCGCCAGAAAAGGCCATTAACTCCCACAAACCCAGGGGTAAGTGCTCCTTCC-CAGCCAAGGCTCATAAAATTTCAAACAGAAACCC-TCTGAACCCAGGAAGAGCAGCCCAGTTGACAAGAAACACATGGGCAGGGCCAACACATGGAATGCATTTTGCTCTGAACAGCTTCTTTTGATGATGTTTCCAAGGGCTGTGACCACAGCTCTCTGCACCTTCATGGCAA-------------GGCTTTGTAGGCCTTGGCATCTGGTTGGA--TCTGAGTCCTGGTG-CTCCTCACTCTCAATGCCCTCATTGTACCACAATAGCA-TCCTCAGCCCTGTGGGCATGAACACGTCTCACACTGTCACTATCTCCACCGGACCATCTCCACCTCCACCACAGGCCTCCAGCTACAAGTGTGGG-TCTTGGCATTTAGGCAGGCAGCCTGTCACGGAATGTTCATCCTAGAAGCAATGGAAGGC-AATTCCCTGTTCTTCCCATCTCCTTGGAGAAGCCTCCAGGCCTAAAAAACATAACTTCTTCACTGGATTGCAG----AGCCCA------CTCACTACCT--------TTTTCTAACACTCTCTTGGTAGCTATAACTACCATCATCACTGAGGACCCCACCATGGATGGCCACAACTAGACTCCTGAACACGTTTCACTATCCCATCCTCCTCCCCATCATCAGGCCCTCC-CAGATCTTCCTCTCAACCTGGAA-----GGCTATCCTGCTATCCATTTTCTTCCATGTCAAGGAACTCTTTATGAAGCCTTCCTCAATGGTCCTGGCCCTTCCCTTTTCCCTCCCTCCCCCACCCCTG-------------TTGTTTCATTTAAAGCTGAATTTAAAAGAATG------------GGCACACACTTATTCT-TAGAGAATCCCTGCAGGTGCTCTAATGGGGCTTTCTCTGGAGT-GGGAAAGTCCCCACTCTGCTTCTCAAAGC
s HiC_scaffold_1 112758089 2631 - 233722169 AGTACTCTAACACACATTCAGAAATCTCCAAGAGAGATATTGGTCTGCAGGA----CTAAATATATTTGATTGTGAAACTCATTAAGCATCTACCATTGATCCCTGTTGGGATGAATGAAGTACACTTTGGAATACACTAATT-----CAAAGGAATTCTGCTGTGTGGGATATTCACAGTTCATCTAGAGTATAGTATGCACACCAGGAACCTCAAAGGAGAGGCACAGAGACCAGTAGGGTAGAATTAGTCAAG-----TTGGCAAACAGATGCAAACCCATAACATCTGAGGAATGTTGGAGAAATTCACATCCTTTTTCTGGAGAATAACTGA-CTTGTCAGGGAAGGAGATGGA-----CACAGAAAGCTGGGGACTTGAgcattata-tttaaatat-------------------gtgaagATTATC--------ACATAAAGAAGGGA--------TTAGGCT----GTGTGAATACAAAGGATAACACTAGGACCAATAGTT---GGGT---CAGTGAGTCATACATTAGTTCCATTATGAGTTTCTTTCATAGATATTCCTTTTGATTAAGCTTCTGATACAGTCCTTACTGTTTGATT-------AGGAGTAATATATTCTAGAATTTCTGATTCCCttgtttacctttctttttaGCCCATCATCAGAAATTAAGTTACAAGGGATCAAACAGGATACTTGAATTTCATATAGAA-------TAGTTTGAGAAaagatgagttcatagctgagtCTCAGCCAGCACCTTCAGGGCAAGTTGAGAGTCAAGTCAGGAAGAACAAACAGCAACCCCAAGTCTGAAGGGTAGGAGATAGTAAATTAGAGC-TGGGCCAAGAGTTAGGTC--------------CAGACTGTAAAGCACAGGTCATCAA--CCTGATCCAGATCATTGCC-TGATCTGTAGGGGGTTAGGACACTAGGTG-----TTAGGCTGACACAATTCAGAATGCCAAGAGGTCTCAGAAGGGCCA--------AGCTA----------------------------------------GGCTGCAGGCGCAGTCCTTCTTAGCCTATTCTGGGGAGATAATCTGCCACAGACAATCAGCAGTTATATGGCATCCAT-----ATAAACATCAATATTTTCCAAAA-CTTTGCAAATCTCCTTCTCAAGACTAGT---------ATCTtcctttgttttgaatttcttcaaCATTTGTACTCACTAGTCCAAcctcctcattttacagatgaggaggaAGCAcctagaaaaggaaaaggagctcCACAGTGACACAACTTGACAGGTTAGG----AAAAGGTGCAGGTTGAAACATGAACCTCTG-GATGACccacttatttttgtttctttgttttcactgAGACACCCAGTATAATGATGA--------------------GTTCTCAACTGGTGCTCCATGAGTACTGGTTGAAGTAAATGAAGT---TGTCAGTGTGTCATGGACTAGTGTTGACTTCTCTGTTTAAATAGCAACAGTGAAAGACTAGAAATCCAGGAAATTTCTTGCTCCAAGCATAGGCTGACATCTGTATACGCTACTGGG---AGTGAAAGGCCCCTAGTGTGGCTATCTTCC-CATGACAGTGTTAGCAGAGGTGTTGAACCGAGAAGAGCCTATGAGCCCAGACAGACCACATCAAATTCTGAGGTGATGCTCAAGAAGTGCTCTGGAAGTCTTTGGTCCCCAGATGCCTATAAATAAAGCATAATTTTCAGCTGAAATATGGGCCATGAGTTTCTCCTTTCCTGGCATTTGGGAACTCCCCGAGGCCCCCAGAGTTGTGCCATCAGAAAAGACCATTAACTCCCACAAACTCAGGGATAAGTGCTGCTTCCTCAGCCAAAGCTCATAAAATTTCAAACAGAAACCCTTCTGAACCCAGGAAGATCAGCCTCGTTGACAAGAAACACATGGGCAGGGCCAACACATGGAATGCATTTTGCTCTGAACAGCTTCTTTTGATGATGTTTCCAAGAATTGAGACCACAGCTCTCTGCACCTTCATGGCAAATGATCAGCACTTGTTTCTCTAGTATTTGGCATCCAGCTGGAGCTCTAAGTCTCAATGCCTTCTAAGTCCCAATGCCTTCATTGT-CCGCAGGAGCAGTCCCTGACCCTGTGGGCACAAGCACATTACACACTGTCACTATCTCCACCAGAGCGTTTCCACCTCCATCACAGACTGAGAGCTCCAAGCATGGGCCCTCAGCCTTAGGGCAAGCATTCTGACATGAAATGCTCATCCTGGCTTGAGTGGAACactattttcctgtttgtttc--ctCTTTAATGGTGATTCCAGGCCTGTGATGCATGACTTCTTCTTGGACATTCAACAGCACCCCAAAAAATCCCACCACCTTCATCTAGTTTTCTGGAGCTCCCTCGGGTGTCTTTACTGCTCTATTT--------CCCACCCAGTTATGGCCCAGTCCAAGCCCCAGAACATGTTTATCTATCCCTTCATCC------CCAAGAGGCCCTCTGCAGGTCTTTCTCCAAAGCTAAAATGACCTGCTTCCTTTCTATCCTTCCTCTTCTGCTGCAAGCTCTTCTCTAGCAAAACTTCTTCAATGGACCT--CTCTTCTGTATTGCCTTTATTTCATACAttcacttgtttgtttgtttgttttatttaatgccAGATTTCAAAAGAGGAATACTAGGTCTGTCATGTTCTTATTCCATTGAAAACCCTTGCAGACAC-CTACTAGGGCTTTCTCAGGAGTAAAAAAAATTCCCATTCTGCTTCCCAAAGC

a score=27390
s chr3           102599012  932 + 160039680 AAGGATAGGAGACTCAGAAGGTTGCACAGTTTTGCTGAAGGTAAAAGTGAAACCTC-TCTGCTGACTCTTCAA--------------------------ACTTGTTGGAAATAACTCCAGGG----AGGGAC--TCTAATCTATGAGATGGTGACAGCTTTCAGCTCCTTCCAAGCT-CCCAGGCGGAACGAGGGATGGGAGACCGAAGAACAAGTCCAGAGTGAGTGGTCTCC--------------------------AGCCTCCTGAGACCAAGCTGGTCCTGAGACGCAAGTCCTCAGTTCCTGAACTGTG-----------------------CTGAGGCCACTTGCCTGCATCTGTCACTGAGAATGGGAGAG-TTTGGGACAAGCCCGGATGTGTGCAGTGAAAGCCGTCTTTCTGGAATTGCAAGGAGATTAATGAGGTTGAGTTTTACAGAAAACATATTTCCAAACACATTCGCCACAGGCCAAAC-CCTCCACAGGGGAGAGTTACTTTTAGAAGCACTTTGAACTTGCTTTCTCTACAGTATCTGAGAGATAACTCACT-CCTGTGGTTACCTG--TTCTGCTTACTGTGAACCTTCTGGGATGAGATGACCATCCTT--GGCAGATGCTCACCTCAGTCCTGT-----GCCCTGGGAGCACAAGAGAAAGCGCATACAAAAACCCAGGAGTGAAGAAGAAGGGAAGCTGCCTCCCATGACACTTGTCCCTCACATGCTTCCAAAGCTCCCTGACTAAAACTGCCAGATC-------TCAGTTCCTCTTTGGCATTGACACAACCTTGGGCATGTCCCAACTTATCCAAGGCCCAATCTTCCTATTTATATAAGAAAGCGAAGCAAAAGCCCATTTTCCTCCCTAACCTAGAAATTGCCTTTAGAAGTAGAAAGCCATACCTGGGAGTGTTCTGCCTCCCCAAAAGGGACATATGCCCACTGACACAGAGGTGAGTGTTCTACCATAGCCGGAGTCTTTCCATACAAAAAGGGAAACATTTT
s HiC_scaffold_1 112762943 1004 - 233722169 aagaggaagagattcaCAAGGTTGGA-ATTTTTGATGAAGGCAAA-TTGAAACATCAGAGGCTGACTCttcaggagacacagaaagaggTAGGACCCAGAGTTGGCAAAGACCATTCTTAGAGATCAGGAACCCTCTAATTTATGAGAAGGTGATTACTTG-GGCTCTGCCCAAACTGCCCA--TGGTTTGGGGTATGGGCAGTGGCAAGACAAGGGAAAAGATGGTGGTCTCCCTAGATATGCCCAGTGCCAGGTTGTCAATATCCAGAGACTGGGCTTGGCCCTGGAC---------CAGT----GAACTGTAGGGAGGAAGTAAAACAGAGGCACCCGTGGTGCTTTCCCTGCATCTCCTGCTGTGAATGGGGAACCTTTGGGACAAGCCCTGATGTGTGTAGTGAAAGCTGTCTTTCTGGAATTACAAGTAGATTAATGGGGTTGAGTTTTATAGAAAACATGTTTCCAAACACATTAGCCACTGGCCAAACATCTCCTCAGAGgagctttatttttagaaaagctttaaaggaattttctTTATACTACCTGAGACTAAAATCAATCCCTGTGATTCTTTGAACTCCACTTACCATAAACCTGCAGGGAC----TGCACAGCCCTGAGACAGATTCTCACCAGAGCGGTATTACACACTCAGTGAGCATGAGAGGAAACTCACGTGAAAA-CAGGGAGTGGAGAGGGTGGGAAGCCTCCTTCAGT-CTACTCATCCGGCCCCTGCTCATCACGATGTCTGACTGAAACTGCCAGATCAGAGAATCAAGTTCCTATTTGGCTTCATCACAATCTTGGGCATGTCACAACACTTCTAAGTTTCAACTTTTCTATTCATATAAGAAAGGATTGC-AAAGCCCTATTTCCTTCCTAACCCAGAAATTG-CTTCAGATCTGCGACGACATACCTGTGACTCCTCCAGCTTTCCTAAAGGAAC--CTTCCTACCAGAACAAATATGA--GTCGAGTCATATCAGGAGTTTTTACACATtaggaggaaaatatttt

a score=46170
s chr3           102600830 3480 + 160039680 GACTTGGAGATAGGG--TTTCCAAGAGCATGTGTGGCAGTTCCAGAGCTGAGGAGGGACAAAATGGCAGAAGTCACTTGTCCCTAGTG------------------CTTCCTTATTGATCTCTGTGGC-AGCTGCTAAGAGCTCT--CTCATGGCTTGCAGTTAAACTATATTGTCAATACCTGTCGCCATCTGAGAGTCTACTAAGAACCAGTGGCCTTTGGAATCAAGT---CTAACGCCTACCTCAATGCTATAGATAGGTGGCTCTAGCCTCTTCTTACATA--AGTGAG---------CATTAGGAAGGAATATG-GTTAGAAGTGAGGAAATT----GGTGTACACTGAGCCCCCTGCTTCTATATCA-AAAGAGAAAGAGTTCTGCTTGAAAACCTTTGAAAAATCTTAAGATCT-------CAAATATCGGTGAGATCTCAGGGAAGTCATCCTAGGGTGATGTTATCA-----------CAAAGCTTACCCACATCTCCATGCTGCCAATTATGGGGTATTGGAAAATGGTGGGCACCTCAAACCTCCATGAAGAAATGTTCcatgtgtcttagtgcacatgtggaggttaaaggacaacttttggggac---------ccattctctccttctatggtgggttgaaccccgatggtcaggtttgcacggccgctccttcaccctctgagccttctcatcctccgTTGGCTGTATACCTAAGGCAATTAGTGGTATATCTACTAATCATATTACCTTAATGAGATT-TAATCTTTTGGAGAGCTGAGTCCGTTAAGTCCTACCTCATTGCCTTCTCTACCATACCaaaaaaaaaaaaaaaaaaaaaTGAAGCAGCTGCTCCTGTCTGCATGTGGGCAGGGAGTGAGCTGCTTGCTGACGGGGCTGGAGGGTGTTCAGGGGTGAAGAGAGCTCTCTTGTCCAGAAGTTCCCAAGGGTT----TGTATAAAGGTGACCA---------------CATTCTCAAAGTGCCTGTTTAAAA-GAAGCAAGGTGAGGACTATCTCACGAGGAGGAAGGATTCAATCCCACATGCAACATAAAAGGATTA-TACCGGAAACAGTGTGAAAATAACAGGATTTTTTTCTCCTTTAAGAAG-GGCAAAATGGCACCAACCCAGAGTGTTTCTCATCCTAGGCAACAAGTGGCAAACAAGAAACGCCAGAGTGGGGGTGGAGTGGGGCAGGGCGCATAAACCAAGTGCCCCCCAAGAGAAAGTGGAGTGAAGCAC--GCTGCTCTGAAGAACACTAGGCACAGTTCTCAGAAGTCTGCCAGTGTACCCATAAGTCAACAGTGTACCCATAAGTCAACAGTGTACCCATAAGTCAACAGTGTACCCATAAGTCAACAGTGTACCCATAAGTCAACAGTGTACCCATAAGTCAACAGTGTACCCAAAAGTCAACCGTCTACCCATAAGTCAACAGTGTACCCATAAGTCAACGGGACCCAGGTGCACATAGTCGCTAGCCCCCCTCAGCGCGTGCTTCCTGGAGAGATTAGAGTCTACTTTGTGTCTGGAAGAAAGCTTCCCTTACTTCCAGACCACTGAGAAAAGGAATGAAAAGAAAGAGAAGGGTAAGCAAGAGTTT-CGTCAAGTTCAGCTTTAGAAAG-----CAGTGCAGCAGGCACTTCATTACCCATGCATGGCTTCAAC--ACTTAAGACGTCCACTCAATCTCCCCTGGCAGAGTAATAACCCCCATCCTCCCGTGCCCACGGATGCCCAGGGATGTCCCAGCACCGGTCATTAGTGAGGCCTCA---------------------------CCAAAGCAAGCTAACAATAGATGAA------------------------CCTGCTACTCGGCC-------------------------------------------------CGCCCCCAC-------------------------------------------------------------------------CCCATTCCCAAGCTAATCCTTCATGATTTGGGGCTTTTTCCGAGAACTAAGGAACTAAGGATTATCCACATTCCTCTTCCTCTAGAGCCTGAACTCTGGCCCGTTCTATTTTGCTGCTTAAAGAAGCATTCCTGAACTGTGAGCCCCATGA--CTGTTAGAAAAGGAAAACAGTGGGAATTTCACAAGATTGGACC-AACGCTCAGCTGCACAAATCTGGGATGCGTTAGGGACTTGAAAACAGCTCTGCATTTGCATGGCGCCATCCTTTCCCCAAGCTCAGAGGCGGGCACGAAAGACTCTTGAGTGGGGACTTCACCAGCAAAGCAGACTCCTGCCTAGCTCCTC---------------GCCTGACTCCCCCTGACCACAGAAGGCCTCCCTGGTCTTCTGCTGGCAGATTGGGCCCCATTCTTTCAGCATTCCAGACTCCACGATTCCAGGCCACAAACTGAGCTGATGAGCCAAACTCTACTCAAGTCCTTTCTCTACAAAGTTGTACAATGTGCCTGTGTGGGCgtgtgttgatgtacgcgcatgtggaggccagaggacaatgccaggcaccatccgtcgattccacgatcttcttttggtatgtggaaacagtgtctctcattgatctggaactcaccaaggagcctaggctagctggatatcaagtcccatggtattccatgtctctgcctccccagcactcagcttacaagcaaagagcgctatgctcatctctttatgtgggttctgagaatcttactccggtcctcgtgctttcaagaggggtgctctctcagctaaggcagctcc------ccagcccTAAATGAGAGCTG-TGTTCATCTTTTTGAATCTGCATCATTAACTTTGAAAGCTTGTCTTTCCCTGCCTTATAGGTAGACAACTTGGGTGAACTGTGATGTCATGCCAAGCAGTTATAGGAACTCCTGGTGCTGTGTGAGCTGATATCACTGTTGGGAGTTTCAGGGCATGTGGGGTCCAAGGGACTCTATCCAGTGGGATGGAAGAGTAAACCCACAGGCTGGCTCCTGCTGACCTCTCGGGGTGGGGGCTTCCCACAATACCAACTACACCCCCCATACTGTCCTTAGCCAGAAGATATTCCAAACTCTGGTGTCCTGCACTAAAGAGGGGACAGACATAACCCCTATTCCCAAGCTGCCTAATCACAAACACTACAAGAGATGGGGGTACTGCCCTCCAGCCTTTGGGAGATAAATGTACATCTCCCCACTCCCCATCTCCATCTGTGGAAAGCAGAATGTCTTTTTGTTTTGATATCTTAAAGGAAATGACTATTTTAAACTGATCTGGGGGATGAGAAGGTAGCTGGCCATTCTTGTTGCCC--AAAAGACTGTGACAGTTTCCAGAAGGCGAGAGGCCATCTGTGACTGGTTTAAATGTATATTTTAAGTTCTGTGTTGAAGTTCATTCTCTTTCCATATGATTCCCATA---GTATCTTTTGTTTTTTTTTTTTTTAATGGAGAGTTATTCCCTTATACTCTACTATTGGTGCATCTCAACACTTATTAAGATATCTCAAGTGTAAAAATACACAGAACTCATCCTAAGCACATGATTCACAGCTAATAGCCTGAAAGCAGAAGCAAGCTGTGGGGTTAAGATCTTCTCCTCCAACATTTACCACTGACATGAATGCTCAGCTCGCCTCTCTTGGCCTCTCAGTAGCCACTGGAGCCTTCTTGGCAGCCTTGAG
s HiC_scaffold_1 112763997 3090 - 233722169 GACTAGGAGGCTGGGACTTAGTGAGATTGTATTTCTCAGTCCTGGAGCTACTAAGTGATAAAATGTCACAATTCAATTTCTTCTACTGAGGTGATTCCCCAACACCTTTTCCTGTTGAATTCTGTGACCAGTTGCAGAAAAGTCTGTCTCAAGAG----GATTGAATAATAATGGCAACAGCTGTTACCAACTGAGATGCTGCTAAGAATTACACATGCTGGGAGCTATGTATATTAAATCCTGAT--AGCCCTGTAAGCAGGTAGTATTGTCTTCCTTTTATAGATCAGTAAGGCTGTTGTCCATT------GCATATGAGTAAGAATAAAGGAAACTTTTGGATTTATACTGTGCCACCTTCTTCCCCAGGATCAGGAAAGAGAATTCCAGCAGAAAACCTTGGTAAAATCTCATGGCCCTCCAAAACAAACATCCTTGGGGTCTCAAGGACTTAAACTCAGTGTGGCTTTGTCAGGATCAGGTCTTTAAACTCATCTACACCTCTGTGCTGTTGACTGTGAGATATTAGAAGAT-------ACAGCGAGCTTCCATGAAGATTCCTCACATG----------CACAT----------------AACCTTCAGAAATGAGATATTGCTGATCTCCCATTTTAGAATG--------------------------------------------------------CAACCCAAGATGGCCGTATTTGTAAAACAATTGTTCATAT------------CATCTTCTTAATGATATCATAATGTTAGGGGGAGCATAGCCCAT--GGTTACACATCTATCTCTCCTCTTCTT------------------GAGATCATGA------------TATTTGCAGCTGGGT---TAGTGGATTA-TGGTGGATGGAGGTGCAGGGTGTTAAAGAGAGGCTCTGGCTTCCCTGTCCAGAAATTCCCAAAGGACCAGATGTGGACAAATGACAAGGGAACATGaaactgcattttttaaaagcccatttaaaaagaagcaaggtATAGATCATCCTGACAAGCCAGAGAATTCAACTGCACACTCAGTTCAAAAGTATCAACACCAGAAGCAATGCAAAAACAAGAGGATTTCAT-CTCTTAGGATAAGTAGCAAAACCACAGCAACACTAAACATCTCTCATTTTGAGTTACAAGTGGAAGGCAAGCATCTCT------------------GGCAGG---TGTAAAAGAATTTCCCC---AAGTAAAGTGCCATGAAGCACATGCTTCTCAGGGGCACTCTGGCCGAATTTCTCATAAACCCAGCTGTATATCCCCAGGACAGTCCTCTGCCCAGGACT-----------------------AGT---CCCCTAAATCAATCAGATTCCCAGA-----------TACACTTGTGACACCAGTTCCCTCAAAAGACAA---------------------------------------------------------------AGCTCT-------------TTCTCAGGGAGCTTAAAACCTACTTTACGTATAGAAG----CCTCTCCCACTCCTGTACTGGTAggagaataaatgaaa-gaaatggaagtaTAACCAAGAGCTTGCAACAGATTTGATTTGAAAGAATCATCCAGTGTAGTCAGAACTTTATT---------------CAACCAACTT------TCTACTCAATTTGTCATTGCAGAGTGACATCCTCATTCCCTCCATGCCAATGAAT-CCCAGAG-TAGCCTAGCACCTGTCACTAGTGAGGATTAAGCGAACGCTTATACACTTGATTATTAGTCAAAGCAAGT--ATAATATAAGAATgttattcatttctcttttctcttcttctttctctgcctctctctctgtgtctctttgtctctcctctctctgcacACAGATACAGACACCCACACATGTgtgggtgcacacacacacaaacacacacacacacacacatacacacacacacacacacacacacacacacacactgcaaagCTAATTCTCTGTGATTTGGGGGTTTTCC----------AGAACTAGGGATTATCCACATTCCTGTTTCTCTCAAATCCGTACTGTGGCCCACTCTGTTCTCTAGTTTAAAGGAGAGGGCCTGACATCTCA-CCCTGTGAttctgtta-aaaagaaaaccaatgggAATTTCACAGGATTGAACCCAACTCTCAGCAGCACAAATCTGGGATGCGTTAGAGATGTGTAAACAGCTCCACATTTGCATGGCGTCTTCCCTTCTCCAACCTCAGGCT---GCATGAGAGATTTTGCACTGGGGATTTCATCAGCACAGCAGAGTCCTATCCAGCCCATCAGCCCAGGCCTCCATGCCTAATTCCCTTTGACCACAAAAGGCCGCCTTCGCCTTCTGTAGGCAGGTTGGAGCACATCCCTTTAGCTTTCTGGATTCCTCTGCTTCAGGCCAAATTCCAAGCTGATAAACCAAACTCCACTAGTTTCTCTTctccacaaaattttaaataaaagatgtgTGGCTCTTT--------------------------------ACCTCCTGGCACCTCCTCTAGGTTGCTCTGT------------------AATAGTTTGCGTTTCTGACCTGGAGC-----------------------AGAT-----GCCCTGCAGTGGCCCAGG----TGCCTTGCCA-----------ACGGCTGTACAGTCCTGTGCTGGACCTGCAGGGAGGAATCTTAGGATGGGTCTCTGACTC--------------AGGGTGGTCTCTCCAGTAAGGGA-CTCCTTTTTACCTCTCCAAACTGTGGGCTGCTCTTCATTCCTTTAACTTTTTCTGCTTCCCTAAAGAATCTCATCTTC-----------------AAAACT--GGTGTTCTGTGCTG-----------------AGGAA---------------------ATAACA----------------GGCATG------------------------------------------------------------------------------------------------------------ACTGCCC-------------------------------------------------------------TGTCCCTAGACTTACCAACCACAAACAACAGAAGTGGGGGAGATACTCCCTCCATGTTTATGGGAGATGAATGTACTCACATATAGCTCCATTCTCTGTCCTTGGAAGGCAgggttcttttttggttggaacTCCCAAAGGAAGTGGCTATTTTAAACTAGCCTGGGGGAAAGGAAGATAACTGACCATTCTTGTTGTCCAAAAAAGAGAGTGAGAATATCCAGAAGGTGAGAGGCC-TCTGTAGCTGATTTGAATACATACTTTAACTTTTACATTGAAGCAGATTCTTTTCCCAGACGATTTCCATAAatgttccttttctttatttatttttgaatgaacCACTATCCTCTTAGACTCTGTGattcctgtgg--------tttttaaaatgtcctaAAGCTAAAAATACACAGAAGTCACCCCAAGAGTTTTATTAGTGCCCAGTAATCTGAAATTTAAACAAAGTTGTGAAGCTAA-----TTCTCTCCAGCACTGACCACTACTGCATTCACCTTGTTTgcctcccttcccatttgagtcCCCACTGGAGACTTGCATGCAGTCCTGGG

a score=39547
s chr3           102606003 1289 + 160039680 CTTCCTCTCCTCCGTCCCCGTGTTCTGGTTTGCTTGATGTTGCTAAAT--ATACTCAAAAAAG-GAAAAGAAAGTGTAAAAAAAAAAGATATTAACGAAACACCTTCAAAAGCATGTCTCCTCTGAGGAGCACTTCCCTCCC-----ACCCTTTTTTGCAAGAATAATACATTATCATC-----------------CATGTAAAATC-AACGACACCTGGATCGTTGGCTGGTTTTATTCTCTTTCTGTTTGAATGTGAGGCATTGTGTACAACCAG--------TTCCCTCCTGGGACATGCCTGGGATGCAGTTCCATCCCTCAGCTCTTTAATTAAAGTCACAAAAACATCAAGAGGGTCTCACCCTTATAAACACGAAAAAAAACTTTCCAGGAAATGGCTCTGTGTCTTGTGTTAACAGATGTCACGGGGTAGTCGGCATGGAGGGTGTTGTTTTAAAATTCTCAATCTGTCTCGCTGGAGTTTTTCCTTAGATGGTTCCTGGATAGCATCACGCAGTTGCCTTTTTTAACGTTCACATCCCTTTATTTAGCTTTTCTGCCCTGATTCACCTTGAACACT-----TGTGGATTACAAACAACCCCCAGATCTGTGCCTTAGATCTGTG-CCGCCATCATC-ACTGCCAGTTAATTTCTCTGGGTTGGGCCTTGTTCTCA---TTTGCCTCTGGATGCTGAGAGGGGGAATAGCTTGCTACTTAAGCAGACGTGGGTGAGTCTTTCTGACCTTAAACATCTGGGTGATAAGTGGGAAAATCTTTT------AATCAA-ATACATAGCATGATAGTGACACACGTCCAGACGCTCAGGGGAATTTTTTTAATAGAGGTTATCTTTGAGTTAC--------ATGGCTTC---AGTGCCCCTTAGTATTTGTT---------------AATAGCAGGCTGCTTTGGGAGTATGCATCCTTCTCTCCCCAACTGGGGCTAAGTCCC--AAGGGAGAGCTATGGGTGCCTTCACCTGGGTAAGGG-GTGGCCATTATAA--------------AGGAGACTTCCTGGAATCAGGAGAGTGAGAAGACTCATTTTTACAGAAGGAATCTTC-TAGAATCTTGAAGACGTGTAATTCTGAGTTGGTCCATGATCTATCGA--GTTACC--TATTTGGCCACTGATAGCTAAAGGTGGAGAGAAACA--TCAGAGGCGCTGGCTCC-TTTGGGGACTGTGCTGTGGTGGGAGGGATGCCTCCTCTCCGATGCTAAAGTCCTGA-GATGGTTCTGTCACCTTAGCATGCATTCAAGTCACAGAATGGCCACAGAC----TGTCTACATGTGTC---ATAACAAAAGCAACATGGCAGTAAAT-GCATGGTGTCACAGGCTTGGCC
s HiC_scaffold_1 112767819 1369 - 233722169 CTTTCTGTCCTCAGTCTCcatgttctgtttagtttgaaaatgttaagtgaaaactcaaaaaaaagagaagaaaatattaaaa-----gatattaagCAAacatcctc-------ttcttcctttcagtAACATTCCCCTCACCACTAACACCATTTTGCAAGAATAATATGTTATTATCATGGCTGTAGCTGTATTCATGTAAGATCCAAAAACATCTGGGTAATTGAtggatgttcttttttttcc-tttgaatgtgAAGCATTGTGTACAACCAGCCTGTGCATTCTCCCATGGGAAATGCTGGAGATGTAAACTCCATGCTCAGCTCTTcagttaaagttacaaaaacatcAGGAGGGTCTCACCCTTGTAAACAC--AAAGGGACTTTCCAGGAAATAGCTCTGCCTCTTGTGTTAACAGATGTCATGGGGCAGTTGAGGCTGAGagtgttgttttaaaattctcaatCTGCCTTAAAGAGTTTTTTCCTTACATGATTTCTGGATAGCATCACATACTTTCCTCTCTCAACTGTTACATCACCTCATTTAGCTTTTCTGCTCAGATTCACCTTGAGTACTTGTTATGTAGATGAGAAATAACCCAAAGGCCAACTTCTTAGATCTCTGACAGCCATCATCTTCTATCAGCTAATTTCCCCAGATTTGGTGATG-TCTCATTCTTTATCTCTTGATATTGAGATAGTGTGCAGCCTGATGATTATACAAAGTCGGGTGAATCTTCTTGAGTTTAAACGTATGAGTGA--------AAagtctttttgagaaaatgaaCATGCTTGGCATCTGGGTGACAAATTTCCAAATGCCT----GAATTCTTTTACACAAATTTGTC-TGGTGTTACTGCTCTTTATGTCTTCttgcatgttctttttttttttttttttttttttctatcaacgTTGAGCAGCCTCTTGAGTATGCATTTTCCTAACTCAATGAGAGTGCAAGTTCCTGGAATGAAGGCCCTGGATGTCTCCGTCTGGGGAGGGACCCAACTATTAGAAAACCTGAGAAGCAGAGAAGGCTTTGTAGAAGCAGGAGAGTGAGAATGGTGGTGGTACTGGAGGAAGTCAGAGTGGAATCTTGAAAATAAGCAACTCTGAGTTTGGCTGTTGTCTGACAACCAGTACCAATATTCAGCTAATGACagctgaaaagaaacagatacaaGTCATTGGAGCTGACTCCATCAAGGAACTGAGCTGAAACATCTGGAATACCTCCACATGGATACCAAAGACCTGAGGACCATCGCAGCATCTTATGATGGGCTCAAATCACCAA--GGCCGCTGACTGATTGTCCACCAGAAGCCAAATGAAGGAAGCAACAAGACAGTAAATAGAATGGCATGACAAGATTGCCC

a score=5916
s chr3           102610202 522 + 160039680 CTAGAACATTGCAGGTGATTCAAGATGAGCGTGGGAGGAGGCACTCAGAAGGAATCCCTGTGGGCCTCTGAATTTATGCACTGACACTCAAGGCCATTGAGGAGCTCTGAACCTGCATTATTTGTATACAGGAAGCAAAAGGGCAGGAAAGGGCAGGAGCGGAGACCAGTGAGGAGGCTGACGCAGGAACCTTGGCCAGAGACT-GATCATTAGAATG----TGATGGAAGAGTGAAAAGGAGCAATGG--------GGTTTTGTGACAGAC-------------AGCTTTTGGCTTGGGCTAGTGGGGAATTGATAATGGAACGATTTACAGAA--ATGGAGATCACGG---TGCTGGATTT-GAAGTAAA------------GTTATGTCCTTATCAAGCTAGAGAAGTCTCCGGGGTATTCAGGAGAAATGAAATGTTGAGTGACAGCTGGAAGTTAAGCCAGCCACCAGGTGCACAAGGCACAAGTGAGGGATGGTGAGATATGAACGCGGTTCTGGGGACTCTTAGTAACTCTCCCAGTCGACATT-GAGATGAAAACCAGA
s HiC_scaffold_1 112773816 514 - 233722169 CTGGACCAAGGCGAGTGATAAGGGATAGGGGTAGGGTGAGGGTCAGGTAAGGAAGGCTTGCAGGACTTTAGATTTCT---------CTTAAAAATGGAGAAGGGAGTTGAA--TGCAAGACTT----------------AAGTTAGAAAAAG--------------CAATGACCAGCCTACTGCAGGAATCTCAGTAAGAGACAAGAGAATTAGAGTGGAAATagtagagaagaaagaaattgcagtgattttgttagatttttaaacAGGATTTCTGCTGGGTGAGGTTTTGGCTTGGGCTAAGAGG----TGAGGATGAGGAGATTTCTGAAAGGAAGAAGATTATGGGAATAACAGATTTAGAGGTAAATCTCATAAATCTGTTTGAGCCTTGTCAAAGTGAAGATGTCTCCTGCATAGACGGTGGAAATGTTGAGTAGACCATTCATTGGAAAGTAGTCCAGAGATCAAGTCTGGAAGGCACAAGACCATGATAGCAGGATTTGGATGTGATTCTGTGGATTTTT--------TTCCTGGCAATGTTAGGGATCAAACCCAAA

a score=34796
s chr3           102610883 1816 + 160039680 AACAGCCACAGAAGGACCAAGGTACCTGGCACGAGGCGAGACTC-TGTGGGTAACAG--------GCTTTCTAGAACCAGAAAGGGTTCCTAGAAAAAGCAAGGTCAGAACAGGGACT-CCCTCAGAGGGAGTCTTGCCGGGGCCACCCGAGCCTGAGTCCTTCTATTGACAGC---CTTAGGGAAGGTAAAATCAACAGTGCACAGTGGTCATTT-GGATCTGAAATAAGTTTCTTGGGCGTGAAAATGGTGGTGAAATTCTTGACAGCTCTGCCGCTTGTCAGCTGGTAACATCATTTTCACAGATAATTAAACCTGAGCTAAGCGAGCAACAGTAGAAAT-CACTCT-GCAAAT--TAGTGCCTCTGGGAAGATtctctctctctctctctctctctctctctctctctctctctctctctctctctctccctctctctctgtctcacacacacacacacacacacacacacacacacacacacacacacacacacacacTTTTATTCCTTTTCACACTCTTTC-----TTTCTGTAAGGAAGCCTATTTTGGGGGCCAGCCTGAGCCACTTTCTGGGCTCTGCTCCAGG-AGCTTCATAGCAGGGGTCGCTCGAGCAAGGGTAGCGGTTTTGTGAGCTATTTGTTGCTGGTTTCCAATGTCCAGAAGACCTCGCTTTCCCACGTATTTCTGGTTTGGAAAGGAGGTGCGCCCGACAATGAGCGCACAGCCTCTGAA-ACCAAAGGCTTAGAGAGGGGAGGACAGACGATT----CATTCTGTGGTCATCTGTTCCCTTCTCATGATAGGGGCAATTCCAAACTGGCCCTGCTCCAGGATCTTGGTGGGAAAATCTGTAGACCCACTACCCCTGCAAACAGCACCCTTGGGGCGTGTTTCTGTGGTGTGTCTGTCCTTTGCACTCAAGAGGTTTCCACAAAGGACACTGTTCCAACTTGGT----TGGGAAGAAGGACGGGAACTGCGGTGTGGCTTCTGGCCCCCCACAGGGGAGGTAGAGGTAAGCG-GCTTAGCAAAGCCTGGGGCCCAGCAGGCCTAGAGCAACTGTAAACAAGAC--AGAATTGATCAGCTC-AGCAGGCTCTTGATTCTGGGTGAGTGAATTAAGCCTTCA-------------GCTCTGCCTGGAAGTGT-CTCTCGGTAGCTGCTGGGAAG-----------GCCATAACCTCTCTGAAGTTTCCACCTGAGCAGAGAGATTCTTCTACCCCAGCTCTTCCAAATAAGATAGTTAGACAGGAGGGTGGGCA--CTACAACAGCAGCAAGTGGGGC-ACACCAACTAGGCAGGGTTCCAAGAACTAGCAAAAGCCAAGAGTCATCTGACCTTCG---TAATGAGGACGCTCA------TCCCTGTCTAGGCCTCTGCCTTCACCACTGTCCTGTCAAA------GCTCATAGC-AGGGCAGACCCATGGGTCACAGAGGTCCTGACCCAATTGCACACAGGAAGGAAGACGCTCCGTACCCCAAATTCTTCCTCTTTACACATTTGCAGTGTGCATTGTCCTGGACTAGCCCCTCTGTCCTCAG----GGACTTTTAGACATTTGAGAAACG-AAAGGGAAAT---GAATCTAGAACTGGATATAATGA-TGGGGATCTTGAGGCAAACCTCAATTATTCAACAAGTATGGACTGAGCTTCACGAAAATGCCA---GTTTATCTGAGAGGCCAGGGTCCAGGCGCCTACGCCTTCTGGGCTCATAGGTTCTGACAAAGCACACAAGTAAGAACAC--------CTCAGCATCCT-GCTAATGGCATGGGGCTGAGAGAAGAACATGGAAA---GATGGATGGCCAGTGGC---------CAGAAACCTTCACTG-GGTTAGCAACAGAATTCTAGACAACAGTGAGGAAAG
s HiC_scaffold_1 112775158 1671 - 233722169 AACATTTACAAAATGCCTAAGTTATATAGCACAAAATATGCCTCCTCTAAGAAATGGCAATTTATGTTTTTTTGACCT--------------GAAAATGAAGGACTAATATGGAAACCACCCTCAGAGGGAGAACTCTCCAGCCCTCACAGGTCTATCTTCTCATGCTAACAACTTCCTTGGTAAAGGCAAAATCAACACCACAGAGCTCTCATTTTGAATCTGAAATCAGT------GGAGAAAAAATAGTGATGAGTTTCCTCATGGTCATTCAATTTGTCAGCTGAGTATATAATTTTCACAAATAATTAAATCTGAATGATGTGAGTAATAGTTGAAATGCATTCTTACAAAtatcattgaatttt--aaaattcactctcttttt-----------------------------------------------------------------------------------------------------------------------------------tctttcagaaagttCTGTAAG--AGCCTATTTTGGGGGTTGGCTTCAGCTGTCTCCCTGGCTGTGCTCCAGGGAGATTAATAACAAGGGCTGCTCGAGC--TGATAGTGGTTTTGTAGGCTACTTGTTGCTCCTTTTAAGCATCCAGAAGACCTCTCATTCCCACATATTCCTGGTTCAGAAAGGAGAT----------ATGAG------ACTCCTGAGCACTAACAGT---GAGAAGGGGGGAAGGGTTATTATTTCATTCCATGGTTGCTTGCTCCCTTCTCATGACAGGAGTAATTCCAAACTGGACCAGCTCCAGGATCCTGGTGGGAAAATCTGTAGACAAACCACTACAACAAACAGCACCCTTGGGAAATGTTCTTACTGTGTTTCTGTCATTTGCACTCAAAAGGTTTCCACAAAGGACAGCATCTGAGGCTGGTGTTGCGTGAAAAA------GCCCTACAGTG----CCAGGGTTCTCCATAGGGGAGGGGGAACCAGGGGTGCCCAGGAAAGATGGGGGCCCAGGAGGGCTGGAGCAACTATAAACAATACTGTGAATTGGTTATCTCAAGCAGGCACTTAATTCTGGGTGAGTGGTTTAACTTTACATGTCCCAATATTGATTCTGCCCAGAAACATGGTACCAGTCCCTGTCATGAAGTTACTTCCAGCACTATAACCTCCCT---------ACATGGACAG-------CTTCTCCTACAGACTCTACAGTTAGGTCAACCAGGTCAGAAATTGAGCATCCTATGG-GGCAGCAAGCAAGGTAATGGGGAATAAGCAAGAATCCAGAGCCAAATCAAAGC--AGAGTCATCTGGGCTTCAGATGACTGATAACACAGAACTAACTCCCCATTCA---CTTTG-CTTCATCGATATCCTGTCAAAATATAGATTTATGGAGGGGGCAATCTTATGAAGGACAAAAGCCCAAACTCAGTCATACATTTGAAAGAAG---------------AATTCTTCACCTG---ACAACTG------GTGCTTTCCTGGAACAGCCTCTTTGGCCTCAGAGCAGGACTC----ATATTTGAGTAACATGAAAGCAGATCTGTAGTATGGGACTGGATCTGACAATTTGAGATCTTT-GAAAAACTTCAGTCATTCAGAAAACACACCCTGAACTTCATGCAAGCACCAGAGGTTTATTGGAGACAGCAATGCGGAGGCATCTGCTCTTAATGG------------------AGCACAGAGGTGAGTACGTCTCTGAGACTCAGCTTCCCAGGTTAAGAAGTGTGG--GTAACAAAGACATGGAAACATCATAAACAGCCAGCAGCCCCTGAGTGCATAAA--TACACTGTGGTTAATCCTAACATTTTATACAGCATTGAAGATAG

a score=89074
s chr3           102635573 2253 + 160039680 ATCTACATTTATCATTTCAAACAATATCTTTCTATTGCATGCCTCAAAATCTTTTCCCCAAAAATGTAATTTTATTTATTATTTTACTTATTGTTTTTCTACTCTGTACCACTCTAGGAAATATATTT-CTGTGAAAATTAAGCCCAATTTTATTTTGTTACTTAAGTCGAAGAGTCATCTTTCTCAA-----------------------TTTATTCTTCAAACCCAATTTACCTGAGTGCACAGTTGCCTTGAATTTTCATTTTCTTTCTGTCAGCATTCTGTGTAACCAAGATATTTCTTGTATTTTGAGTCAACTGGCCCTGAACACAACTTAATCCCTGTTAACACTCAGAATTACAATGCTCATATTATGTTGATGCTGAAGGAAGTTTGGCTCTTAGGACTTGGTTTTAGAAAGAGATTATTATTATAATAGATGAGATAAGAATTGATTCACAAGACCCTGAACTACTT--CTTCTTGTTCTGTAAGGTCATTGTCCTCGTACCTGGGGAGCAATGGAAACCTTCTCCCACACTATTGGACTGTTTCCCTCTGCAAACACACAACCAATTCCAGCAGCTTCTACCCCCAGGCA----------CCCTCTAGCATGTGTGCTTACAAAATACTGTGTT-CTTGGTCCTGAACTTTCCCCATCCCACATTCCTCATTTTAATCACACCAAAGTGCACTTATTAAAGTCCTGGCAGAGCATGGTACTGCAGCTAGCAAGTTACGCACATGTAGTCTCTGCTGTCAAGGCACACAACATCACAATGAAGAAATACAGACGGCCCAATGTAAACAGTGAACGATGATTCCTTTAAGTCTGTGGTCTACTGTGCCTATAGGATGCCAAACATCTGGATGAAAGATGTAACTTTCAGCCGGGAAGCTGGCTGCTCTTCCAGATAATTGAATAGACTTTTATGTGAATTGCCTAAACCTAGCAATTATAATAGTTATAGTAACTTATATTTGGATAATGATTTACAACTGCAGtgtgtgtatataagcatgtgtgtgtgtagtaaatgtgtgtatgcctgcatgtatgcatAAAGCTTCACATAATTACTATATCTTTATGGAACAGGCTTATTTATATCAGTTTAAAGAGAG----GAACTTGAGGGCCTTTATCAAGCATGCATGGGCCTCATACTCTACAT-TCAAATATGAA------GAAAAAGAGAAATGGCAATCCCTACCGTAGAGGTGCCTATAGGCCAGAGAAAGAGCTTGAAACTGAATGAACCtgacttacccaaggtcacacaactagttactgtcagatctgggactcaatccaacttctctggcaccgagaccagcactctgttcacagcTGCCTTCAATAAAGGCCAGATGCACTTACAGAGCAGAGAGCAGAAAGGGGAAGGGACAGCCTGCCCTGGGAATCGGAAGAGTCCCATTAACAACACTGAGATCAGGATG-AAGCACACATCATTAAAACTACAGCCATGACGGCTGTGATCAGGCACTAAATAATGCTTTTGATGCAATGTCC--------------------AGAAGACAGGGTGGGGTTCCAATAGCATGT-TCTCATGTCTTCTAGGTACAGTTATGGACAGACGAGGCAGATGGGGCAAGCTCAAGCAGCAGC----TTACTTCTCGGGTGTTAGAGTTACAGTTAAACTTTCCTCTTTTTTCCATCCTTTCTTTACTTCTTTCTCTAAAACATGAGCTATTACCTTTCATTTTTATTGATGTTGTTTGGATATAAATT--------------------ACAgaaaaaataaggttgctgaaatcaaacagacctggatccaaatctcagggtcacaatgggtc-tctatgatctagg-agaactctgcaggtctctgtgccttggtttcctTGGTGGAGAGTAACACTAGCC-TGCACAGCTGAGTTGAGTATTAGAGATTCTGTATTAGAC---ACCAAGACATGTAGCCACCATGCAACCTGCAATTATCTTTATCACCATCATTATCTTGTGTAAGCCATGAC-TGCTCTGGAAGTGGGCAGGTGTTGCTAGACCTGCTGTGAAGTGCAGGTTTGGCCAAGTGTCTGCA-CAGCATCTTTAACGCAGAGACCATCAACCTGGGATCATGCTCATCAGCTG-AGAACAGGAACTGGGACAAGACGTACAGTTATGAACATGTAGAAAACCCTCCTTTGTCCTAAAGAGATTTATCATCAACCTC--TACATCCTCAACAAGCATGTACTCTGTATATGCTGCAAGTCAGAGACAAAAGAAA-CACCAGAGCTGTGAAGATAAATAGGAGgggactaaggatatagct
s HiC_scaffold_1 112786097 2284 - 233722169 ATCTACATTAATCAaattaaacagtattttaaagTT--ATGCACCCAAAACTTCTCACAAAGAGTatgatattataaataatttca-------tttttctaat-------gctCTAGAATATACTTTTACTGTACAGTTCAAATCCAATTG-GTTTTGCCACTTAAGCAGAATATGtacctttaaaaacaaagatttaatcCCCTTCAGTCTTTGatctttaaattcaatttttctgGGCACCTGATTATTTTGAATGTTCATTTTCTCTCTG--AATATTATGTGTAACCAGTATGTCTTTGATGTTTTGAGTCAACTAGCCCTTAAAACAACTTAATCTTTATTAAGACTGAGAATTACAATACTGTTATTATGTAGATGATGAAGAAAACTTGGCTCTTAGGACTTTGCAGTAAAAAACA--TATTATCATAA--GAATAGATAAGAATTGTTTCACAAGTTTCtggactgtttttcttttgtttctataaGGTCATTGTCCTTATACCTGGAGGCAAATGGAAAACT---CCCACACTGTTGGACTGTTTCCTTCTAGATAAACCAAACCAATTCCAGCAACTTCTGTCCCCAGGCAAATGACGGCACCCACTGGAAGGAGTTTTTGCCAACTACAATGTTTCTTGGACCTGAACTTTTAACATCCCACATTCCTCATCTTAATCACACCAAAGTGCACTTATTAAGGTCTTAGATGAGCATGATATTGTGCCCAGAAAGTTAAGCACATATAGCCTCTGTTGTCAT---------CATCACAATAAAGAAACACAGATAgctcaacataaacaatgaacGATGATTCCTTTAAATCTGTGATCTACTGTGCCTGCAGGATGCCAAACATCTGGATGAAAGATGTGACATCCAATCAGGAAGCTTGCTGTTCTTCCAGATAATTGAATAGACTTTTAT-TGAATTGTATAAACTCGGTAATTATAATAGTTATACtaac--atatttatataatgaTTTACAACTGTAATGTGTATGTGT-----------TTTGTGGTAAATATGTGTATGTCTCCATGTATGTATAAAGCTTCACTGAGTAAC--------CATGGAATATGTTTAtttatcccattttacagagaggAAAGAATTTGAGACCCTTTATCAAGCAGGCATTGGTCTCATACTCTGTGTCCCAGACACAAAGCCCACGGAGAAGAAACACAGCAATCCCTACCCTGAAGGTGCTCATAGACCAGAGAC--AGCTTGCTAGTGAATGAActtgacttgcccaaggtcacacagctagttaCTGTCAGATCTGAGACTCAGTCCAACTTTTTTGACACCAAGTCTAGCGCTGTCTTCACAGCTGCCTTCAGTAGAGCCCAGATTCACTTACAGAGCAGTGAGTGGAAAGGGAAAGGTACAGACAACCGCTGGAGTTAGAAGAGTCTTATTATTCACACTAAGACCAGAAAGAAAGTGCAAATCATTAACATTACAATAATGGAGACAATGACAAGCCACTATAAAATGCCTTTGATGCAATGATTGGGGTtggaggggaaaaagaagaaga-aaaacaagaaaccaatGGCGGGTCTATCATACCCAC-----ACAGGCACAGGAGGAGGACACACA-----CAAGGTACAACAACAGCTGGATTTTTTGTCAGGTGGCAGAGTTGTagttgaacttt----ttctttccttttttctctctgtcctttttCCAAGTTATAAATGGTTACCTTATAGTTTTATTTCTAttgctaaaatataaattataagcAGGAAAAAGGAATAACAGAAATATTAGGACGTTCAAAGTTAAACAAACCTGGATTCAAATCCCCTGTTCCTAACCACTAGTGTGTGAACACGGTAAAACCACTTAAGTA-CTTTACCTCACTGTCTTTAATGGAGAATTATGTCAGTCATGCAAGATTGTTTTGAGAATTAGAGATTATGTGTTTCACATAACTAACACACACAGAAACTGCTCAGCATGAAATTATTTGTACTATCATTATTCTATCACATGAACCATGAAGTGTGTTGGAGGCAGACAGCCGTTGCTGGGCCTGTTATGAGGCACAAATTTGGCCATGAGTTCACAGTGacatctttaaaagaaagaacaatatcCTGAAATCATCCTCATCAGCAGCAAAACAAGAACTCAGCCAAGTGCTAGGGACACAAACATGTGTAAATCACAATCTTACTTTGCAGGGATTTATCATCAATCTCTTTGTATCCCCAGTAAACATTTATTAAGGACTTCCAAAaagtcagagacaaaaaaaagaaccagTGACACAAAGATAAATTGTATTGAATTCTTAGTGTAGCT

a score=21221
s chr3           102638486 1747 + 160039680 GGAAGAAGGAAACTTGGAGAGGATTTCTGAAAGGGTAGCTTCTGGGTTAAGCCCT------GATCATAGGCAGGATCTATAGCTGCTTAGGGAAAGGGGGC---------CAGACAGAGAGCATAGAACACACAACTATGGTTTCCTTAATTACAAGTGGCTGTGTTTTGCCATAGCAAAGTGGAATCTAGAGCTGAGCA--------------------------------AAATTTTGTGTACCTTATCCAGAAAGCAAGGAGGAATTTGAAGCTGGGAAGGTAGGAGTTAAAGAAGCTGGGCTGGCATTTTCAGCAT----ACCGTCTGGAACCCAGTAGAGGATGGATTTGAGC-AGAAGAGCCCAGCAGCAGTTAGAGGCTACCTCTGAATGGTCAGGAGA----------AACTTAGCCATGAGAGGGTAGTGATCACAGGGCAATGATCGTGGAGCAGATATAAGGGGGATGGAAACCAGAGATCAGGGCTAGTGCTAAGGATCCCAAGAGCCTGGTGAGAAGCAGAGAAGAA----TCAAACTCTTAGAGAGAATTTGCTACACATCCAGCCTGGACAAGCTTCATGGGGTAGAGAAGACATAAAATGCCTTTAAAGATGGATACACAGATGGGGGGAGAGGGGCACATCT-AGGCC--AAGGAAACTGAGCTCAGAAGGTCA-AAGATGCAGGAATCATTAAACTATGGG--TGAGCTGATGCACA-AGTACACCATCACTGAGATGCCAACTTGAATTCTGT-----------CCCATCCTGGGAGCAAGCTTTTGTGGCAGGAGAGAGTATGCACTCTCCCAAAAGCTC----TTTCCTAAAACTACACACCAAGAGACCACAATAAGCTCAAGGAGAAAAACTGATTCTGCA--TTTCATTCACTACGATCTACGGGGACA-AGGACTGAGTCGCTCCTGGTGGCATGGAA---------GCCTCGTGATGACCCTACGCTGTGA----------------GACTTCTCCCCTGCTCCTCTCTCATGCTTCCTCCA---CCCCTACTCCCTTCCAGGCAGTAACAGGCAGCCATCATGGGATGAGAAGCCATGCCAA--AAAAGAAAAGGAGAAGGAAGATGGAGGAAGAGGTGAGAACAGTGCTGATAGAAATGAACTGAGGTCAAAGTGAAGAACAAAGACTG---ATTCCACAAAGGAGAGGTTTTCCTACCAACCTGGGCATCACA-GCTCAGAAC-GCAGTCAGCAAACTTCCTCACTGAGGACCAGACGGTAGACAGTTTCTGTCTCACCTTTTTCTCCACAGAGGACCAGATGGTAGACAATCTCTGTCTCACCTCCCCCTCCACAAAGGGCCTGATTGTAGacagtctctgcctcacaccctcaactatgctgttgacagacaaaagcagctatggatggtgcttcaacaagcacagctatgtttcagtagaactttatttatgggcagtgagatttgtatttcataaagtgttccccaccccatgagatgtt---attttttcagatcattaaaaaatatggaagtcattcttggctGAAATGTGAGCCTAGGCGGTGGCCACACCTCTTGTGTAGAACACCGACTGCCACCCCTGGTCCAGAAGAAGAAGCACATGGCAGCTGAGGAGCTGGAAGGGACTGACTATTGTGGAAGGGGGATGTCCCAAACAGACAGTCCTATGGG------ATGGGAAAGAATAATGGGCTGAATTTCTGGGAATAACTCTTCTCTG---------AGTTTTTATTGGTGCATTCCTGGGCAGCAATAAACTGTCTAGCAAGGGGGGCCATACCACTCCTTCATAATTAAAGATGGAGTGGTAAGCTTTTACATTTTGAA
s HiC_scaffold_1 112788490 1726 - 233722169 ggaagagggaagccTGAAAAGAATTTCTGGAGGTGTGATGCCTAAGCTCAGGCTTCACTGAAATAGAAGCTAGTTTCAAAAGGGACTAACTGGAAGACAATAAAGCAtcacagacacagacaaaaacatATTCAACAGTACAGTGGAAAGCTGCACTCAGTTCTGTTTTGTCCGGACA---CGGAATCTAAAGCAGAGCATGAAGTTGGAGAACTCAGTGGGAACAACCCATGAGATTTGTACACTTTATCTAGAGAGCAACAA--------------------CAGTGGATAAGGTAGTAAGACTTACACCTCACACATTTGCATC-TCTGGTGTCCTGTCAAAGAAATATTTGAGTGAGACAAATCTGGCCAAAGCTAAGGGTCACTTTTAAGCATTCAGTAAAGCCAAGTATGAACTCAG-------------ATGGTCACAGGG--------ATGGAGATTGCGTGGGGGGAGGAGGGACCAGATAGCAGGGCCATCATTAATGATTCCAAGAACTCAATGAGATGTAGAAAGGAAATCATTAAACTGTAGGAGAGAATTTGTTATGCACCCAGGCTGGGAAAATATCATAGAGGAAGCAGGACATGAGAGTACTTTATAGAAGATGACACAGGT--GATAAGAGGGGCAGATTTCAAGCCATAAAAAAAAAGGACTCACAAAACCACCATGTTTCGGTTGCATTCACAGAAGGAATTGAGT---TTCACAGAGTGTGTGATTTTTGA----CAgccttaaattttataaattcccATCTCCATCACGGGAA-AGGTATTTGTAGCAGGATAGGGTATTTTCTTCCCC--AAGCTCCTCATTTCTTAAACCTAGGCAT--AGGGTCTACACTGCGCTCAAAGTAAATAA-TGATTCAGAGGTTTTTCTAAATTATAatccaggaaaaaataaagcatagtTGCTGCTGATGGAATGGAAGGCCTGATGGCCTCATAGTGACCCCATGCTATGACTGGATGAAGAAAGAGACCCTTTCCCCCACTTTTGCCTTATTCCTCTCCAAAAGCACCCACTCTGCAGCACCCACTGTCAGGCACGTGTGATTGAATGACAAGCTGTGCCAAGGAGAAGCAAAGGTAAAGCAAGACCACAAAAAGTGGATGGAAAGCACTAAAGTGACTGGCAATAGTTCaatgggaagaggaaaaaaagagcattCAATAAATGA-CCATTTGCTTACCAACCAGAGTGGTGTAGGGTTAGAGTAGAGGTTGACAAACTT--TTACTG------------------------------------------CGAAGGACAggataataaata--------------------tttacaaggGAATTT--------CAGTTTCCATTTCAACTACTCAACTGTACCACTGTGGAACAAAA-CAATCATAGATACTATATGAATAA----AGGTACAT-------AAATAAGATTTATGGGCAAGGAGATTtgaatttcataaaatgtt-tacgtgtcataaaatactttatttttttcagatcatttaaaaatataaaacacattcTAAACTCACACAAAAA--TAGATGGCAGCTGGATTTAGTCTGTGGAGTGTGGTTTGCCAACCCTGGTCT-----------CTTGTGACAGACAGACATCTGGGAATGGTCTTCTAGTACAGAAGTGT--CTTCCTAAATCTACACTCCTGTAGGGTCACTATGGAGTGAGATATTGAACGGAAACCGATAGAAAAACTATTTTCAGTACCTTTCTGGATTTCATTAATGCTTTCCTGGCTAACAATAAGTTGTTTAGTAA--TGCACCATACCACCCCTTTTCCCTTAA--TTGTAGTGAAGACATTTTATATTGTGGA

a score=9633
s chr3           102640219 396 + 160039680 TTTTACATT---------TTGAAGGGCTGCTTTCTATATCTCTAT--ACTACACTATAATAAAATATTCAAAACTACAATAATAAAACAAAAC--AATATATATTATAGCTATTAAATGCTCTGCTGGCTCCTAAAAAGAC--AACCTTGATGACAGCTGAGCCTGGTCACTTGAGCATCAGGGCCTC-CTGTGGCCTCA----CCTGGCATGA-------CTGTCATGGAAGTACAAGACTTCATTTTGCTAGCTGGCCTTGCCAGTCTGTGAGGTCCTCACACC-TACAGAGACACGTGATGCTCTATTCCCCCCTCACAAAACTCCATCTCTTTCTTCACTGGTTACTAACA-GTATTTTCT-------------------AAGTTCCAAAGACTTGTGTGGTCATGTCTGGAAAATGTCTGAGAGTTTGTGAGCTCTGTC
s HiC_scaffold_1 112790688 440 - 233722169 ttttatattaaataaacgTTGAAATACTGCTTCCTATATTTCTATTAACTATATCATAATTAAGGTCgttgaaatacaaatataaaacaaaatcaaaaatatatcctaattattatatattctttta-ctactaaaaaaaataaaaccagatgaCATCTGAGCCAGGCCACCCAAGGGGCTGAAACTCTCTGTGGCCTTAGCTGCCTATCAAGAACTGGGCCTCTGAAGCAGAGATGAGACTCA--CTTGCACACTCAGTTGCCAAATTTATGAGGTCTTCATACCGTCCACAGAAATATCACATTCCATTTACAGC-CACAGAGTTCAAGCTTCACCCTCACTGGATACTAAAAAGTCCTTTCTGGTTTTCTAGATCTAATCTAGTTTCCAAAAATTAGTGTAGTCCTGTTTGGAAAATATCTGAAGGTCTCTGAGCTTTGTC

a score=21282
s chr3           102644233 1036 + 160039680 CCAGCCACTGGACCTGCTGGGGGCATGAAGAGTGTCATCCAAAGACCTCAAACTTGACAGAACTCCACCAAAGGAG-CTTCACAGACACCCAAG--AGCAGGCTTGATGGTGCACATTCCCAATCAGCCAGCACTCACAGGATCTGCCCAGCTCTGGGAAGGAGCCCACCCCTCACA-------GAGGGGAAGACAGACATTTCTCTCCCATCTGCCAGCTCCAGGCAGAAATGCTGTTGCTGTCATGAGGCACA-GGCTGGTTCAGCTGCTTTCCCACAA-TCTGGTTCTGAAGGAAACACACGGGCCCACTCAAAACACATCCATCCTCGTTCCCCATTTGATCTTCCTCCCACATGCTGTTCAGATTAATGCCGGAGTTTTGTTTCCATCTGTTTTCAGTCCGTGGCTAGAAACACACGAGTCCGGTTCTGGCCCTCTGTGGGTCTAGGCATTCTGTCACAGGGCGCCGAGTTGGAGCAGGGGTTGGCCATGGGAGATCCGCGACAGACCAACT-CATGTCTTATTTCAAGTCA-ACAGACACTGGATGTGGGCCTTCTCTCTGCCAGGAATCCT-CACCCAGTAGATGCCAAGACATGCAGCTATTCAAATTCAAG--CAGGCTTCCATAACTTCCCGTGTTTTCCCTGTGA----------CCTGCAAGAACTAAAAAATGACCCATGGCCTGCCTCTGTGACCTCATCTCCCACCAAG----TCTTCTCTTCTTACTCTCCCATGGCTTCCCCCACAGT-ACCTTTGCATTCCCATAGCATGTCCTTTTGATCCACTAATAAGGCCCTCTCTCTCTCAGAAA--------------CTCAAGTTTTTGTGCAAATAT--CTTACTCAGTTGAGAGCCAAGAGGCC-----------AGCCACTGCCCCT---------------------GGCCCA-TCCTGC---TCTTTCTGTTTTGCATCACATCTGTCATATGATGCTTTGGTCCATGTCCTTAGAAAATGTAACTGGGAAAG--ATGGTTCCAGAGAGGCAGACATGAAGGAGAGAAGAAACAAGGAAAAGATGGAGGCAGAGAAAACCTAAGGGAGTGTTCTCTGTGTGGCGGTAGTTTT
s HiC_scaffold_1 112791316 1058 - 233722169 CCTGTGACTACACTCACTAAGGACCTAAAAAATATAATCAGCAGAATCCAAACC--AAAAGTCTCCAGTCAAGGAGATTTCACAGA-ACCCAAACTGGCAAATT--GTTGTATATATTTCCAACAAATCCAAGCTCACAG-ACTTGCCTGGTTGCGAGGAG-AGTTCATCCCTTGAGTCTGTATGTAGGGAAGATGAATGTGCTTTTCCCATCTGTGGGCTCCAGGT-GAAACCCATTTTCTGCCTTGAGTCACAAGGCTGGTTCAGCTGGCTTCCCACAAATCTGGTTCTGAAGGAAGTGCACTCTCTTGCTGAAAACACATTCATCCTCTTCTCTCATTTGATCTTCCTCCCACTTGCCTTTTAGATTAATGCTGGCATTTTGTTTCCATCTGTTTTCAACTCTTGGCTACAAAAATTTAAGTCCATCTCTGGTCCTCCACAGGGCAAGGGGCTTTGCTACAGTTTGCTGCTGTCAAACAGGGGGCAGCCA--GGAGACTCAAAGAAGATGGGCTGTATGTCTTATTCCATATCAGACAGACATTGCATGAGGATCCGCTATGTGCTGGGCATCATGCCCTCACTAGAAGCTAAGTCATGATGCTGCCTGAAACACAGCACAAGCTTCCATA------------TAACTAGAGAGAAAAATGGGACTGCAAGACCTACAACAT--CCCCTCCCCTACCTCTCTGA-CTCAGCT-CTACAAAGCCACTCTGTAATCCTTGCTCTTCCGCGATCGATCATGCATTGGCCTTTGCACTGCCCCGAGAC-TCTCTCCACCCCACCCAGAAGGCTTGCTCCCC-----AAACTGGCTAGTTCCTTCTTAGGTCTTTGTTCAAATGCCACCTTCTCAGAAAGGCTCCAACTGACCATGCTGCTGAAAATCACAACCCCTCCATATCACTTTCCTCCTTCCAACCCAgttctgcctttcctttttctttgcttcacCT-TACTACCTGCTACATGAGCCCAGTTCCCTAGAAAATGTAGCAGGGATGGGCACAATTCCAGA-------------------------------AAAGGATGAAAGGAGACCAAATATAAAAGACTTATTTCCAAATGACCACAGCTTT

a score=70365
s chr3           102645385 6654 + 160039680 [encoded data, 7154 characters]
s HiC_scaffold_1 112793504 5695 - 233722169 [encoded data, 7154 characters]

a score=95642
s chr3           102653978 4892 + 160039680 [encoded data, 5298 characters]
s HiC_scaffold_1 112800965 4817 - 233722169 [encoded data, 5298 characters]

a score=13544
s chr3           102659094 1016 + 160039680 AGGCAGAGGG--CTGAAGAG---TCTCCAACTGAAACAAATTCTACATAAAGCAAGTTCCGGACAG--------------------CCCTCAGAGG-------CACTTCAAATCTGTATCACTCCTCAGGCAGGCACCCCAGCAC----CCCACATGCATGTATGAGAATAGAAAAGTTGTGGATGAACA---ATTAGAATAAAGAAGCTGACGA--CGGGTATCTCAG--AGAAAACCGACTAACAGGCTAAGATCCTAATATGGCTGGCCTAATCTCTAGCACAGATGTCCCAAAAGGCTGAACTGACCTGGAGAATTAAAGATAAGACATGGAGAAAGTGGCCCTCGGAGGTGATCACTCTGAAAATCACCTGTCCTCCAACCACA------------GGAAGGAACTGCAGAATTTGAACTTGTGAGTCATCCCGTTTATCTGTACCACCTCTGTTGAGTCATTG--TTAACCAGTGAGCCTGCCCT--TGTGTAAGGTG------------TGTGTTTGCATCTGGGCCCACACATTCAGCAGACAGCACCAGCCAGGGTGACTCATGAGTCCTCAC-------------ATTTTGTCACCATTAAGTCTTGTCAGAGATTCTCTATGCTTGTCTG----ACTCCAGAGAGAATGTTTTTCCACAAACGGGAAGC-------------------CAGGGCGCAGGACGGGA--AACCCCTC-------------------CACCAGCTATGTCTGAGTGTGTTCA---TCTCTCCTCAGAGTTCATCCACCAACTGCCCCCT------------CTTCCTTCTGCTGTCTT-CAGCT-----TCTGTCAGTTCCTAGAAGAT--TGGCAGGAAACATAGTTTCACTGCGGGCCATCACTGTCTATTTCAA---AACTCTTCAGGGTCTCAAAAGATCCCTGGTTCCTCTCATACACTCTTCTGAA-AGTCTATTCATA----GTCTTTGCCAATGATGTCATTCCTCACAGGAAAACCAAATGCACATCTTCACATGTTACTCACTGCCCAAAACCCTCCCATCTTCTACCATACACAGA-------CCTGTAAATGTTGGTTTC--CTCCACACACACACCAAATGTTATGTCTCTAATAATGTCCACTGTGTTTCCAGTCACACACAAGTCAAGCGG
s HiC_scaffold_1 112807491 1147 - 233722169 AGGCAGGGGAGTCTGAAGAGGTGCCTGTAACTGACTCAACTTCCACTTAAAGCAAGTGGAAAATAGTAACTGTGAGGCAACTAGAGCTCCCAGAGGGCAGGGTCTGTTCTCATC-----cactgctgtgtccccagccccagcatggaGCCAGCATGTGAAGACATCAATAAAAATACACTGAGTGGAGAGTGATTGTGACAGGGAGGCTGATGGGGCAGAAATTCCGGGGAGAAAACTAAGTGGGAGGCTGAG--TCTAACATGACCAGATTCACCTCCAGAAGAGGGAAACCCAGAGGTTGGGATAACCTGGAGGACTAAAGACAACACTTGTAACACCCAGACCTTCGAGGGGGTCATTCTG--AGTCACCTGCCCTCCAAACCCAAAGTATGTCTATGAATGGAACTG-AGGAGCCAAATCTGTGAGTCAG-CGGGTTACCTGTGCCACCAATTCTGAGTCACTGGCTAATCCTCCGAGCCTGCCTCGGTGTGTGAGGGGCAAGTGTTCTCCTGTGTTTATATCTGTGCCCACAC--TTGGTGGACACCACCTGCGGAGATGACTCAT--CCTCTCACATGTTACTCAGCGATTCTGTCACTGCACTGCCT--GTGGGGACTCAC--TGCTCACCTGCAGTCACCCAGGGGAAATGCCTTCCCACAGAGAGAAAGCAACCTGCTTCCTGGGGTGGCAGGGC-CAGGACACTACTGACTCCTCACCTCCTATAAGGTATCAGCACCAGCTAACTAAGAAGTAGGACATGGTGCACCATCACAGCCCTACCAGGAATTGTCTCCTGCCTGCAAAAGCCTCCCCTCATCTTTCCTATGGCTGGTACCCTGGCAGTTCTTAGGAGGTAACTGCAGAAAAGGGAGTGCCCTCTTTGGCTACTGCCATCCATTATTAGGTAACTCCTAAAGGCCTAATGACTTTCCTAATTCCCCTCCTCTACCATTCTAAAGAAATTGCTAATAAGTCATCTTCCTCTCTGAAACCATTCCTTGTATTATTACCAGGTTAACCTCTTCAAATGATGTTTCTTCCTCAA---------ATGTTCCATCCCAGAGAAATCCAGTCTCTGTAAA---TGACTTCAGTTCCACA-----ATAAAGTGTCTTGTCATTGGCAATGTCCAGATTGCTGCCAGCCACACATAGCCCCAGGGG

a score=30936
s chr3           102662815 1444 + 160039680 GCATGGCCTGACTGTGTAAGGGTTTTAAGCTGAGCTCGAATTCAACTGGAACTCCAGGCCAGCCCCTGGTGGGGTAGGGGGAGTCGCTGAAAGTTGAGACAAGGAGAAAGCATGCCACTATACCACATTTAAAAGCCTGTGGCTCAGAC-CTAGCCACATCTCTGACATCCTTTGGTCAGGTTCCCTGTGGTCAGGCACAGGGCCTGACAGCCTCCACTAACCAGAAATCTGGAAATCTGGAGCTATGAGGGAGAGCTGGAGGGGAAGGAGGTTGCCAGTCAGGCAACTGTTCCACAAACCCTGGCCCAGGTACAAAAGGGTTAAGTTGTTCTCCAAACA-CAAGAGCCAGAAAGACCAAGTCCCTAAACTCTGCCACTCCTGGGGCTCCAAGGA-------GGGGAGCAGAAGGAGGCCCTCACCATGATGCATCTTGTTGTGTTTGATCCCTCAGAAATTATCCCCTGCCCTGGTCTAGACCCTGTGGAGACTAAAAGAAGCATTTTTACCCCAGTGGGCGGAACTCAGAGTCCTGTGCAGAG---CTGC--AGTGCACTGGAGGGTATGACAGTCAAGAATGCTTTCATAGATGGGCTCTGCTGCCTGATTCCGTCTGGAATGCACAGCCCTTGTCCCTTTGATCTTTAATATGGCTGCTTGCAGGGGCCTGGTC-CCATATTC-TAGCTCCTTCTGCCATGTTCCACATAGGATCTCCACCCCAAGTTCCTGGACACAATTCTGAAACCCTGGTTCCTAACTCCCTCTCCCTCCCTTTCTCCCCAACCATTCCTGAAG--GTGCCTTCA--CTCAGACCACCAACAGCCTGTGCACAGGcacacagacacacaccagcaggcacacacacacacaccagcaggcacacacacacacaccagcaggcacacacacacCAGCAGGCACACACCAGCAGGCACCTGACCACCCATGGGCATCCTCTGCT-CATCATGATGAAGGGACACTTGCCCCTCCTCTTCTTGGGTCTTCCAGC-CAGTGTTTCCAACACCCCCAAAACAAAGATCCAGTTGCTTCGAAACCAGCATCTGGTATCTTGGCTGGGGCTTCTCCTTTTTGTTTAGTTTTTGCTTTGCATCCAGATGTTGGTGTCATGTAGGCCTTGCCTGGAAGTCCTGCAATCCCAGCTAGACGTCGTGTTTTCCATTACCACTCGG-GTAAGTCATCCCAACTGGGAGATGGGAGCTGCAGCTTGTCCTTTCTGAGCAAGA-------GGCTCTGCCACTCAGCAT----CTGAGGC-TCAACTTGCTCAGAGACACTTAGTTGTGAACACGCTGCTCACTGTCTTTTTTTTTACAG---GTTTCTACAGAAAACTGCTGAGAGCAAA-----ACGCTGGAGTCTGATCTT-TGGGCTGAGTGGAGAACCCGGAGATATCAGGTCGCTTTCCCCGGAATCTAGGAATGTTACCTCATTTTGGGAAATGAATCT
s HiC_scaffold_1 112810943 1282 - 233722169 GCATGGCCTGCATGTGTTAG---------------------CCCATCAAATCTTCAAGTTAGCTGCTAG--GTATGTGGTAAATCACTACGATTTGAGA---GGAGAGA---------------CCAATCATCAACCTA-GGCTCAGGCTCTGGCCCCTTTCTTGGC-CCCTTTCATCAGGCACACC-TGGTCAGGCACAGC-TCTAGCTGCCCTCTCTAATTAGGAACTAG--CATCTTCAGCTCTCAGGAACAT-----------GAGACCTCTCCACCAGGTGATTGTTCCAAAAGCCCTGCCCCATACCCAAATGGGTTAAGTTGCTCTCGAAGGGTCAGAAATTCAAGAGACCAGCTCTTCATGTTCTCCTATTCCTAGAGGTCCCCAGATGTCCCAGACAAGCAGAAAAGAGCCACCACACTGAAGCATCTCCTT----TTGATTGCACTGAAAATGTCCCTCATTATAGCCCAGACCCTGTAAAGACTAAAACCAGCACTCTTGACTCAGTGGGCAGAAGGCTGAGTGGCGTGCAGAGAGCCTGCTCACTGTACTCAAGGGTCTGACAGCCAAGAATGCTTTCATAGCTGTGCGCTGCTCCTTGATTCTGTCTGGAATGCACAGTCTTTGTCCCTTTGATCTTTAATATGGCTGCTTGAAGGAGCCAGGACACTGCATTTGCAGCTagttctg------tcctcat----tctcctctcCAAGTTTCTGGACACAAATCCTACA------TTCAaaactctttctcttttc---tcaactCACCTACTCCTGAAGAAGTGCTCTCAACTCCAGACCACCAATGGTTC-----------------------------------CATCTTCCTGATGGCAGGCTGAC---------CTTGCTG----------------------------------------CCACCTATGACCTTCCAGAGTTGCATGCGGGTAAGGGGACACCTGCCCCTCCTTTTCTCACAGCCACCTCCACAGAGTTGCT-GTACCCCAAGCACAA---------------GAAAACAGCATGTGGTAAATTGGCTGgggtttcttctgtttgtttaa--tttgcttttcatCCAGATGTTAGTGTTA---------TGCCTGGAAGTCCCTCGATCACAGCTAGAAGTTATGTTTTCTATTATAGTTTGGAATAAGTCACAATTACTGGGAAAAGTGAGATGCTGCCTGGCCTTTC-AAGCAAGACCCTTTCAGGTCTGTGCCTGAGAACAAGACTGAGGCATCAACCTGCTCAAAGAAATGTAGCTGCAGGCATATCACTC---------TTTTTAAAAGAGTGCTTCTTCTGAAAA--GGTGAAAGCAAGATTTTACCTTCAAGTCTGCTTTCATGGTCTCAGCAGTGGCCACAAAAATATCAGATC-CTATTCTCTGAAACCACAAATACTAGCTta-ttaggaaaaagaattt

a score=32412
s chr3           102665143 1153 + 160039680 AAGAACCATGAC--AAGGGTTTGA---AAAAACAGATAAAGTTCTTGATGGCAAAAATAAATAAATACCACAAAAAAACACAAAACTTTTTAAATGTAGTTAAAACCAATTTGATCT---------------------------------------------GAAGATTTAGAAATTGTATTGCTAAGGCTCAAACCTG--------------------GTGGTCCTTTAACTGTCTGTACTTAAACCCTGAGCAACTGTGTAAGACTAATAGAAACCAGCAGATGCCT--------------------------GCCCCAGCTTCCTTTGCCAA---TAGCACATTCTCTTTCTTGTGTGTTTC---------TTACTTGTTTATCCACTTGCCCCATGAGGAAAGAAACAGAAAGAAGACACT----------CAAGAAAACCCAAGTCTATAAGTAAA-AAGTCATATCTCTA-----------------CATATGAATGAGAAAGGGGAAGAAAGACTTGTGCCCAGTCACCCCAATGTTTCTAAATATGCAAGAGTTTGGCATTATGTGGGGATGGGCTCTGTGACTGGTGCTTAGAGGATAGAGTCCCCT-TTAATTTGACAGCCATATCCTACGGGAAACACTAAATCTACAGCTAAATAAGAATCAAAACAACTATTCCAAAGTGATGAAATTTGGGGATTGAATCGAACCGTTTGATGCTACTGAAAACACATCAATTTTGGCGAATTCCATGGGAAGTGGTGCAGAGCCTTCCTGTCCGGCCGGCCACTGGTCACTGTGGTTACCTGGGTGGCACACTTTCAGAGCCACGC-TCTCTGCTTTCCTCCTCCTTCAGACTCAGCTCATCGCTAACACTCAAGGGGCTTCCGCTGGACCACGGGTGCCACATGATAGGAAGGGCAGCCATTGTTCAGAACA---------GGAAAGTGCATGGCAGCGAGAAACAACAGGGAAGGAGAGAAGAAAGACGAGGGAGTGGTGGAGATAAAAGCCAAGCAGGAACATGTAATTTGAAGAGGAAAGGGCGACCAGAGCACTTGAGAGGTTTAGCCGAACTGAGTGAACTGAAGA-----CAAGGCCAGCAAAATGTCCCCGTTACCCTCGGCTGTGTCCAGGTTATTTATGTCCTTAAGAATCCCAAGA----------------TCCAAGAATTTGCACAT-------TTTTTAAGCATCTACTC--ATTCATCCAGAAATGACTTGTAGACTTTACAGGGCTCTGGGCTTCGTTCTAAGGCATTTTCAAGGTTATAGCACCAACCTGGTGTTAGA
s HiC_scaffold_1 112818448 1257 - 233722169 aagaaacatgccTTAATGGTTTAAGCAAGAATCACATATAGTTC------AGAAAGAgcataaaatacaatgaaaacacaaggtactttaaaaat----tttaaaccaatTAGATGTTTTAACCAATGCTATGAACCAAAACACAAATCATTTTCATGTTTAGAGGATGAGAAAATTGTGCTGCTAAGGTCAAAACCTATGGCCTCACTGACCATGTTTGTTGTCATATCACAGCCTGAACTTAAACCCTCAGCAGCTGACAGAAAGCAATAGAAACCAGCTGACACCATCTGTCCTTTGGAGGACCAGTCAGTAGCCCTAGCTTCTTTCACAGAGGATAGcatgttttgttt-----gtgtttccctgtctctttgtttgcttgtttatttgacaaatgaggaaagaaacagaaacagaatacttAGTAAGGTCCAAGAAAACCTAAGTCCACAAATAAGCAAGCCATATATCTAATGTAGGAGGAAAAGGATAAAGaggtgaaggaggagaagaaagacatGT--CCAATCACTCAAATACTTCCAAACATGCAAAATTTTGGCAGCAAGTAGCAACA--TTCCATGATATATCTTTAAAGGAGAGGCTTTACTCTTTATTTGACAACTGACTCTAAGAACAAAC------------gctaaaaagaaatcaaaacaattatTCCAAAATGATGAAATTTAGGGATTAAGTCTAATAGTTTTATGctagtaaaaataaatcaattttgaCTGATTTCACTGAAAGTGGCCCAGAGCCTTCCTG-----------ACTGGGGTCTGTACTTACCTGC-TGGCACAGCCT-AGAGCCACAAGTCATTGTGAGCCTTTTGCTTCAATCCCAggtcattgct--------------ttccactgggcCACAG------CATGTTAACAAGGACAACTGTTGCTCAGATCAAAATGAGAGGGAAAGTGCACTAAAATGAGAG------GGAAAAGAACCAATAATAGCGAGAAAGGGACAGAGATAAAAACAGATCAGAAACATgtaattttaagaagaaagtaGAAATAGGTCACATCAGAGGTTCGGCTGAACTGAATGAACTGAAGAAAGACCAAGGCCAGTAAAATGTTCACATCACCATTGGCTTCAACCAGGCTATTTATGTCCTTAAACTGTCCGAGAATTCACTTTAGTATTTTACTATAATTTACTAATTCCTGCATTCTTAGACATTCACTCTTAACTATTCAACAATTATTTATGGGTTATTCCGGGTTCTGGGCATAGTTCTAAAGAGTTACAAAGTTTACAG---CAACCTGGAGTTAGA

a score=44581
s chr3           102669901 1388 + 160039680 ACTTCTACATTTATTCTTTAAAATTTTTCCATCAA----GCAC-----TTTACCACAtggctaa-ttagcatagagggaagaaacttggaccaatcttcagggagc-tgggtcttgcttccagctccatcc-tgacaagctatgtgaccttaaactaacttccctcactccatatgccaagcaaggg-gctaaaccagat--tccctcatgtccctgcagcaccaacattGCAAGTTCCTGCAAACAGAGAACACGAAGCCAGCTCTG-AAGACCAAGCGGGTTAGTTTTCAGTTATTTCACTCTTCAAATAAAGGAAACATTCCAGTCCTTATCTGTAACCTTCTGGAGACTTCCTATCCATTGATAGGATTCCCTGTGGGAAGTGTTTTGAAATAGTGGTCATTACTGTGAAATGAAATGCTGGAGATTTATCTGCAAGCAAGGCTAAAAGTTTTTAGTGATTTTTTTTTTCCCAAACGTATGAGAAATCTTTATCCAACTGGACGTGAGGCAGATTCTTTTCTGAAGTATCTTGTTTGTATTCTTAACACTAGGTTTAGCAGGAGTAAGGAGTTGAAGCCGGAGAGCTTGTCACTTACTCAGAAAGCTGTTGGGGAAGATAGACTGACAGCCGCTGGTGAATCACGTCTAAGCCATCTCATGTCTAAGTTCCAAATTATCTACAAGTATTACTCCACACACATCCATGCA-ACTTCACCA---------TGAGACAGC----AAAGAACTTCAGCGATAGCCACGAGGTGAAAGAGGGGCTTTCTCCTGGCCTCCAGCATTCCCAGAGGCTCATTTCCTCTCTCCTCCTCCTCCATCTCTCCCCAGTATTCCAACTTCCCGCATGAACCCCAGGCCATTTAGTCCTATCTTATACGATGTCAACAACTCCAGA--TAACCTACAACAGTGTCTCAACCCAGACCCACAAACTTTACATGAAAGAAAGAAGATGAAAAACAGACAAGGAAGCGGCCTTTGATTCCAAATGCTGGAATTTTGATTATCCTGGCCAGGCACTTGGGGACTCTGCAAA---GTTTT------------TCTTTTTCATAGCACTGTTACCAGTAAAAAGTACAACAACACACTTTACAATAGCGCACAGCATAGTTCAAAGATTTTACACTTTATTTTTTAGTCATTCGACAAGGACGTTATTGTGG----TATTCTGGATGCTGCATTCCCTTTCATGGCATCTAAGCTATGAATTAGCTATG--GCACTGAAGTCAACTTCTTAATAGTACTATGTTGAAAG--GAATGCAGTTCATTCTGCCCCGGGGTGGGAGAGTTAAGGCTGGTGAGTCTTGGGTGATGAGTAACAGTGGAAAGATAAG----------CCAGATGATGAGTGAAGTCCAGTGGACAGTCAAAGCAAGATGAACCAGGA-GGGGCATGGAAGAATGGAT
s HiC_scaffold_1 112822824 1375 - 233722169 ATTCCTACATTT-CCCATTAAAAGTTTTCCATTCATTTTGCACAAAAATTTGCCTTGTATCTAAATTGGCACAGAGG--AGATCTCTGCACTAAGTT--AGGAAGCCTGGATCCTGGTCCTAACTACACCCCTGAGACCATATGTAACCTCAAGCCAACCTCTCTGGCACCGTTTGTAAATCAAGGGAGCTGACCCAGATGTTCCCTTGAGTCTCTCTGGCACCAACATTCCAACAgcctgaaaatataaaacaccaaaccagcactgTAAGATCATAGAATTTAGTTCTT-GAGAATGCAGTTTTTAAA-GAGGAAAGCATTTCAGTCCTTACCTATAACCTTCTGGAAACTCTCTACCCATTGATATAATTCCCTAtgggaaatgttttgaaataacGGACATTACCATGAAGTGAAATTCTGGAAATCAATCTGCAGTAAAGActgaaaatttt----gaatattttttccccaaatgtaTGAGAAATCTTTATTCAGTTGGACATGGCATA-------TTCTGAAGCATCCTGTTTGCATTCCCAAAGCATGGCTTGgtaggaa-aaaaagcagagaccaGACATCATGCCACTTACTCATAAAGTTGTTAAGGAAGATGCACTGACAACAACTA-TGAGTCACGTCTAGGTCATTTCGTGTCTAAGTTTTAAATTATCTCCAAGTGTTGC--CACACACATCCACGTGTACCTCACCACCGATGCCATGAGATGACTTGTGAAAGATGCCAGTCACGTCCGTGAAGTAAAAGTGGGGCTTTCTCCTAACCTCCAGCGTCCCTGAAGAATA-----CCCTCTCACACCCCTTCTTACCACTCTGATGGT---AATTCCTG----------AAGTCATTTGGTCACATCTTAGG----GTTTGTAAATGCAGGATTACCCAACAAAAATGTC-------AGTCc------------atgaaagaaagga-atgaaaaacagaCGTGGAAACTTCCTTTGATCCCAAATGCAAGAATTTTGAATACCCTGGCCAGGCACTTGGGGACTTTGAatattggttttttgttgttgttgttgtttttaccaTACTGTTACTAGTAAAA---ATAAGAATGTTCTTTAGAATGGTACACTGTACAgttcaaatattttac------tttttcaatcaTTCAACAAAGA---TATGTTGGACACTGTGCAAGGTGCTGAGAGGGAATTCA--GTATCTAAAGTATAAATGAACTATAATGCAATGAAATAGATTCTATAATAGTGGGATGTTAAAAGAAGGATGTAATTAATTCTG-CCTGAGGTAGGAAAGTTGAGAAAGGCAAATGCTAAGTGGTGTGTAAGAGTTTGGAGATAAATAAGAGTTATCCAGATGTTGAAAGAAATTTATAAGTCATTTCAGCCCAAAGGAATCAGGGTGGGGAGTTGTAGGATGGGT

a score=35748
s chr3           102674883 3041 + 160039680 ATTAATAAATTGTC-TGATGTGAAGTATTTCTGTTCAAAAAGCAAGTTCTGGGCAGGGCAC---GGATAATTACCtaaatggctaataggtaggaaaaattgttcgatctcattagtg--taaggaaatg-aaaatagcaaacccctcataagatggctaataccacctttcc----------caaaaaat--aatggcatttgctatgacaggcactc---------------------tcacgtgctgctgatacaaaccgatgaagcttctttggaaaatagtttggcattgagt------------------tttatcctataaccctgggatttatgcggcagaagcccatgcatatgatcaccaaaagacctac---agagcgttcacagtggcttt-tttcta-cagccaaaactgcagagaacccaaatgcccatgaactggaaaatctacac-taagttgtgggctccaagtgcaatggaacattatgccaacatggaaatatgtaaactatacttgacaa----catgaaAAAGGAAACTGATAGTAAAGGGAAATACCATATGGCT-GAGTTCAAGGTCAAAATGAGGATAGGAAAATCAATTGCAGCATTAGAAGTTTGTTGTTGTCtttaataaaaaaaattttttttaaaGCTTGACTTTAAGGAAGCTTACCTTTTGGAGATGGAGGAGTGGTCATGAGAAAAGATTCT-GGAAACTGGTCTCTTTCCTCATCCAAGTGAACGGACGTTACACAGGTACTTCTTGGATATAACTAATTGACGGTATTTGTTTATGATAAGCCTTTCTCTGTGTGTGTATAACA-----------ACAGTAAGAACTGAACATAAATGTATG---------CATGACAGGTCTCGCAGGTGTGAATTCTCACAAGGGCGTGGCCACACTCAGCACCCTCTC-----------------ACCCACAGTGCTCCAACAAGGA------CAAGAAACATTCCAGGTTGTCGT-GGCAGATGCTGCCTTGC--ATATCCTCCCT----GGATGGAGGTGATAGACAATGGAATGGA--CCAGAAGCAAAGCCCTTCAGCACATCGACAGCC-----TGCGAAAGGACTCTCACCACTGCCCTCATTTCCTCAGAGCTGGAGAAGA-ATCTAGGCCACTGAAG-AACAGAGGCCCCACCATAGACTAACTGGGTAACTGAGAAATGGTTAAAACT--GCCCAGCTGTTGGATGTAACCTCTATAAAATGAGAATAAGCAGGCCACCCCAAATGGTTCCAAGAGGAAACTA--GAAATGTGTCTATCAATGTGCTCAGCCGAGC----TTCTCCAGAA--AGCCGCTTCTTCTGTTCCTCTTCAATGTTTTCTGAAGAGACTCAACCTCCCCACAGCGACCTCCCGAC-TCAGAATCCGGTGCTCCTGGAAAGCTGGCGTTT-CAAGTATTCTGTTACCGTGTTAGACTATGTCCCCGACTTT-GATTCTGAAAGCAAGGGCCCCTCT--------------CTGATTGGAAGGCAAGTTCGACCCATGGAACTGCCCATCTGGAAGATGGCTCTGTC----------CTTTGAAGTAGGTTTCCA-GAAGGCCCTTTTCCTCCCCCCCTTATTTACTGCAACTCATAGGGACAGTTTGTTGACAACCCCCTACCCCCAG----TTCCCGAGGGTGAGGGAGGAC------CTTGATCCTTTAACACTTTATTCTCTAAGTGCCTGACGTCTTCTATGCAGACACACTGATGT--------TTAAGAGGTACA----TGGT---TTGTTTCAGTCACTCGTCAGTTAAACTCATCCCTGT--GTAAAGCAGGGGAGAGAGCACGGGGTTATGCACGTACCCGTCCTTCCTAACCCGCAGTACACCTCTGCCCCATCCATCACTGACCAGCAG-CAGCTAGTAATTA--------GTTCTAACTAGGGGCTGAGCATCTAGTGGAGTCTATGGGA------------CCATCTCCAAAAC-------CACCTCCCCAACACCGTTCCTAGTTCTTCTCATC-TTTACACCACTGGCTGC-CAAGCTTCTCACTACCCT-GTTTCCCTCCTTTGTGCACGTACACAAACACCCTCCAACACACATCCTCTCA--------TTGGTTTTGGGCATCTCTAGTACCCAGCTTCTATCTCCACTCT--------CACTCTTCTACAACACTGAATTCATAGTGCCCAGCCATTGAGGAGACACTGACAGTGCCCTCCCAGACACCCTGAGCCTCTTGTCCCTCCCTCA--GAGTCACCAAAGCAGAGACAGTTTACCAAGACcctagtttagaattcataattttgtgctctgtctcttaaaaa-----------------------------------acaaacactccccca---aactgtaACACAAACTGAAGTGTTTGTTCACACAGAGTTGCAATCTGGAGAATGACGTCAC---AGGTGACCAGCC-CCCCTGATCAACTCCTGACTCCGAAGCTCACACGCCACACCCTAGCCTCTCTTGCTGTGTTTGCTGTTGGCCGGAAGCTTCGCCATCTTCACTGCTTTCTGCAAAGACTATATTTATAGAGTAAAAGAGCTCTGAAGATGTTCAGTTCTGTGATCAGTCACTGCTGCCTCCTGTCCCAGGAACC-AGCTGAATTGCTCACTGCCAAGCTGCTTGGCACACAGCACCAGCTGGCTTGTCAGCCTCAGCCCTG-----CAGGGAGCTGGGACAGGCAAGTCTCCTCTCCTCTTTGCATAGCAGCCCTGGGTGGATTCAGCATGAATACAGTGATAT---------------------------ACCACCA--------GGG------------GAAAGGTGAATTGGAA----------------------CATTT------------------------CTGCCTGA---------------------------ACAAAAAATCGGTGCTCTCTGTC--GTTGAAGTCT-------CAGTAACAGTAAACAG---GGATCTTTCACTACAGCCTCCCTGGACCCCT--GAATCAGTGCCTTTGAGGTTCGACTCCCTTTGGAGCAGACACAAAAAGGCTTTCGATATCCCTGGCTTATG----CAGACTTtgtaaattggtacaacccgtctaggggatgaagtagcattcttagtagagttgaagatgggcgttc------------------cTCTTCCAGGTGTGAATCTCAGAAGCGATGTAATCCGATCTGAGGATGC----------CTAACATAGA---ATCTGTAACAATAATGATGGAATTTAGAATGGAAGAGGAAAGGAAGGGGGGGTCAAGAGAGAAAAATGAAGAGACCTGGAACAACCAAAACATCCACCAACACAGGCGTG---CACTAAAGCGTAGTGTGGTCTTATGAGGAGCTGTTGGTg
s HiC_scaffold_1 112831890 3296 - 233722169 ATTTACAAACTACCACAATCTAAGATGTTTTTGTTAAAGTAGCACCATCAGATTAAGACACAAAGGATAATTTGCCAA-TAGTCAATAAGGAGAAAAAGTTGTTCAGCCTCATTAGTGATcaaggaaatacaaaataaaa------tcacaagacAGCTAACCCCACACTCCCACCAGCgtgactaaaatttaaaatgaattagcaCTGGTGAACATTTGGAGCAATGAAATTTTTTGTATATTGTGATGATTGCATGAAATGGTATAATCACTTTAGAAAATAGCTTGACATTAAATATCAAAAGTGGAAACACTTGTATCCTACAACCTAGGGATGTGCACAATAGAAATGGGTGCATGTAA--ACCAAGAGACATAATGGAGAATGTTTACAGTGACTGTATTTGTAGTatctaaaagtgaaaataatc-aaatatccatcaacaataaaatacataagtaaattATAGTTTACACATAC---TGGATACTATACAGCAACAAAAATGCATAAACTATGCTTAACATGAATCATTAAAAAAcaagc--ata--aaagaaaattagtatATGATTCTAGTTAAAGTTCAAAACCAGGC---AAAACTAAGTGGTAGCATTTTACTTCAACTGTAGTC-----------AAAT-------AATGGTTGGCTTTGAGGAACTTTCTATTTTGGAGATAGAGAAGTGAGCCTGAGCATGTTTTCTAGGGCTCCATTCTCTCTCCTCCCCTAAATG----GAAGTTTCTAAGatgttttctctttataatttactGAACACATTT--TTGTGATAA---TTTCTTGCCGTGTGCATAACActtcttaataaaaattaaaaactgtaaatTGATAAATGGGAGCCTGGCATGACATAACACTCAGAACAAAGTTCCCAC-----TGTTGCC-CTCTTGGTACCCTTCTCATATTGAGCACATGGAACAGACATTATTTTCTCAATGGGCCTTCCAAGAAAATATGCAGGCTGTCACCAGCAAATGCTGACCTACTTCTATCTTTCCTTTGGGGGCCAAGGTCatagggaagggaaagggaccCCAAAGCAGAGTCCTTCATTGTATCATCAGACCCAGATACAGAAGGAATC------CTGTGCCACCTTCTTAAGAGTTGGACACTATGTATGTGTCATTGAAGTGGTTTGGGCTGTAAAACATactaa-----------agaaactttaaaaacacaGCACACCT-----------CACCTACAAA----GAGTAATTGTACTACCTCACAGGAGTCAGTAAAGAAACCAAGGAATTGGTTTTATGAATGAATCCAGCCCAGTATAGTTTTCTGATACCATTAgcatcttctgtctctcttcagtgTTCTCCAAGAAAGCTCAGTC-ACCTAAAATGACTCCCTGACACCAGAATTC-----TCTTGGAAAGTGGGGGTTTTCAAGCCGTCTGTTTCTTTGTTGAACTAAGTTCCTGACTTTTGGTTTAGAAAGAATGGTTCCCTCTAACATGGTTCTCATCTAACTCAAAGATGTGTATTTCTAGAGGACCTGCCCCTCTGTACT-TGCCTCAGCCACATCGTCCTCTGTGCTGAGGATTTCCACAAAGGCCCACCCTCCCTCCTTCACCTTTCCTGGGGCCCACAAGGATAGTACGCTG---------TGCTCCAAGAggttgcatgtgtgtgcacatggacTCACGTCTTGA-CCGCGAATACATAATTTGCCAAGAGT--------GTCTATAAAACCAGAGAAATGTGTGAACTACTAATGGAAACAAAAATGGTGCATTGCTTCCATACTGTGTTG-----------CCCTATACGCGAAGGGTATGAAGGAGCA-GTTCTTATGCTCCTGTGCGTCTCCCTTGACCTTTACTACATCATTGGCCTGTCCTTC-CACACTAACAGGCAAATAGTAATTACTGGTTCAGTCTTAAATCAGTGC----CAATGAGTGGATTCCACAGGATGTCTGCAGCTACCAACttcattccttcttttcctctctcacaGAATGTTGTGTTTTTTCCTCATCATTTACAACACTCTTCGTGCACACAGCCCATGACGCTCATCTCTGTCTCTTAAGCACATACAGACAC-CCACCCAACATGTA-CCTCCCAGACCTCAGCAGGCCTGGTGCATCTCTAACAAACAGCTTCT-CCTCCACTTTGCCTTCGTCCCTCCTCCCCACC--TGGACTC----TATGCAGCTCTTGACCAGGCACTAGCAATTCCTTC---GGTGCCCT---TTCCCTGTCCACATTTCACTGCAGCTCCAAAACAGAGCAATTTCACCACGTCTCTGATTTGTTATTAtcaattttgtacttttttctttaaaaatgctccccaaactCTATTAGCATCAGGTTCTTAACACTATCTTTCCCCGATTTAACACttaaacaaactgaagaggtTGTGCACACTAAA----------AAAATTCACATCATGTAACGTGATCAGCTGCTACTAAGCTTTGCCTTTTTTCAAAGCTCATAAACTATATACTGGTCTTTCTTACTTTGTTTACTGCTAGCAAGAAGCGACACAATCCTCACTGCTTTCTGCAAGGACTACTTCTGT---GTAAAGGAGCTCTAAAGATGCTCAGGCACATGACCCATCACCTCTGCCTCTTGTCACAGAAACTGACCTGAGCTTCTCTCTGCCCAGCCGCTTAGCACATAGCA-----------GTCAGGCCATGCCTTGGCCCACAGAGATCCTGGGGAGGCTGATCTCATCACCTCTCTGAAAGGTACCAC----CAAATTTAGCAGAAACGTAGTGACAGGAGGAGAGAGTGAAATGGGATGCTCTAACCACTAAACAAAATGGGGTTTCTATGCATGGAAAGAAACTTAGAAAGCCATTATTCATAGATGGCTCCATTTTCTTAAAGTCAAAGACCCATCTGCCTGCCTGGTCTGCCCAAACCCCTTGCCCACCTGCTATGCATAGTTAATGCTCTCTGACAAGCTGGATACCAATGGAACAATAATCCTCAGCAGCCTGGTGCCATCACCATGGCTGTCCCAAACCCTCAAAAATTAACTCTTTTGGAAGAATTCTGCCTTTGGGACAGCTAAAAGAGGTCTCCATGTGCCCGTGCCTTCTAACCTACGGCACTGTTGATTTATGTCACCTATTTGATGGATGATTCATCATGACTGGTGAAGTTGAAGATGGACATTCTATGTGAGCCACCAACCTCATTTCCAAATGTACCCCTCAGTGGTACTCT---------TGAGAGTGCACAAATGAATTTAACGCAGCATTATCTGTAATAGTGA-AAAGGAACTAAGAattgaagaggagg--------------------------aaagaaatctagaataacctAGATATCTACCACTATAGGTGCAGATAACTGAATTATA--ACAGTCATACAATGAGCAATTGTTG

a score=103875
s chr3           102678681 5112 + 160039680 [encoded data, 5478 characters]
s HiC_scaffold_1 112844360 4734 - 233722169 [encoded data, 5478 characters]

a score=23872
s chr3           102687428 948 + 160039680 GACAGTGTGTGAGTCTGTGACTGTTCTAGAACTTTCTAGGAAAAGGACAATCTTCTAGGAAATCC------------------ACTTGAGGCATTACCTCCCCAACCAGTTCTAAAATTCTAGAAAGATAGTGTCTGCCTACCTATACC-CTGCCCTGGCACTCTCAGGCCAAAGTCATAAGCCGATCGGTGTACTTGAACATTGCAGCTCATTTTGACGATAACCTGAGCAGAAAGGACATAGAAGATTGATTGGCT----ATGAGACGGTATGCAACTTCACCCAGGGCTCA-GAAGCAAGATCCACACTTTGGGACAAGCCCTCCTTTGCACACACCTGCTTCCCCTATTCATGCCCAGTGTGGCTCCAAGTTGAAGATTCT-TAGAGGCTGTTGCTGAGGAAGTATGCCTTGGGGGGTGGGGGTGCACTGTTTAAAATAAATAGCACCATCCTTCCCAGTAAACTAAAAATATGTGAACATACAGACTTTTCTCAGCTGGAGActctcgtacatttttgctccaccttggtgcctgttagcacttgtctgttagccagaactagcctaacccaaaat------aaatgaatgggtagaaacgattaatgggaaaaccccagacggagcctgtgtcttccagcagc--tgcttttcatgacccaggatgcttgtgtttgtggtttcatgttgcatgaatagactgcagtcgtatgtttgctggaagaggactgttccttgttcgtttgaggaaattcagtagattgcatttgacggtgggctggaaaatcgttgtgactttcaagCCATTACCTCCACTCTACCCATGTAAATGGTTATGGAATAGCACGAGGTTTTAAACTTAGCCGGCTATCACTCCAGGAACCAAAGCCATTTCTTTAACTAA--GGAGACTGCTCAAGCCTCAGTTTCAACCTCCTGAGGATGGGCGTAAT-GTAGCCAGT--GAAAGGAAGGTACTGA
s HiC_scaffold_1 112849282 913 - 233722169 GATGGCCTATGAGTCTGTACCTGTGGGAGAACTTTCCAAGAA---GATAATTCACTAAATAATTCCTGAGAACAAAGTGGCCTATTTGGGCCATTATCTTT--AATAATGTCTAAGACTGTAGGAAAATAACACCTTTCCACCTCCATCTCTACTCTAGAAATCTCTGCCCAAGTTCATTGGCCCATCAGTGTACTTGAACATTTCAAGTAATTTTGATAATAACCTAAATAGA----ATATGGAAGATTAATTATCTGCCCATAAAATAGAATGCAACATCTTTCAGAGCTCGCAAAGAAAAATCCATACTTTGGGACCCG--CTCCCTGATGCACACCTGTTTTCAGCATTGATTCTCCATATGGCTCAGAATCAATGATTCTACAGAGAC-----------AAAACTGCCT-------GGGGAGTACACTGCTTAAATCAAATGTTAGCAACTTTTCCAGTGAACTAAAAACCTCTAaacttacagatttttttcagCTGTAGACT-TCATAAGT------------TTAGTTCCTGTTACCATTTATCTGT--ATTAGAATAAGACCAATTTAgaataagaccaaaaaaattagTACAAACTATTAATAAGAAAACTC-------AGAAACTGTCTTTCAACAGCTTTGGTTTTCATGGCCCAGGATGTTAGCATTTGCTGCTTCATAATGCA-ATGTATAATACAAGCATTTATTTGCCCAGTGA-AATTGCTCCTTGCTTATTTGAAGAAATTCAATAGATCATATTTTATGGCATTCTGGAAAACTCTCATGACTTGTAAGCC----------CCCTGCCTGAATAGAT-GTAATAAAAGTGAACAAGATCTTGAGTCAATCTGGTTCCCACCTCTTG-------GCAAGTTCTTTGACAAACCCTGAATTCTCCAAACCTC--TTTTGACATCtgcaaaaaggaaataatagtaTTTAATCCAAAAGGAATATTCTGA

a score=19470
s chr3           102688490 778 + 160039680 CAGCCCTCAGGCTCCACCAGGCTCCAGGAAACTGCCT-----------TACCAGCCCTTGGTATCAGTGGTGTGTGGAAGCTCCTGCCCCCA-CCACCCAGCCATCAGGAGTCACAGACCAACTCCAAGAAGCTGAGGCCCCAGCAGACGTGAAGCAGGGGAG-GAAGAAGGTGTCTGCATGCCTTAAACCAAAGGG------TCTCTGCCCAGGCTAGACCCAGCTGCGCCCTGGAGGAAACAGGATGGAACAGAGACTCTCTCAGCTGTCATCTGCCCAGGCCTCACATTGCCTCTCTCACAGTCTTGCCTAAATCAGGCCCAAGAGTTTTAATTAAATGTGTGAAGAAAGAAAAAAAAAAAGACAACAACAAAACAAAAACACTCCTCTTCTCGCACATGGGAAGGGCAAGCCTTTGCCACCCAGCATCCAGAAGGAGCTGGCCCTTGGAGAGG---AGCTGTGTCACCTGGTGCCTTCTCACG-TGTGATAATCAGCTGGCAGAAGAGCAAAGTGTGGGAAAGGCC---CTAGAAGAAGCGAGAACAGTTCGATGTCAG---CCCCAGCCCCCTCCCCAAAGTG-CTCCAACTGTGGCTTCCTCAAAGTGACTCTAATTGTTTAAACAAGATTAAACAAGCATGGAATCTGAGAGGGAGAAGGGAGAAATTTGAAAAACAAATAGCAAGGGAATTTTTCTATCCAAAGACCCGAAACA---AATCTAAACCGTAAGAACAGCTTTAACCTAGTAACCTTTTAAAATCCCAAATTGAATGTGTCCAACAGAATGTGTCCAGAGGAAGA
s HiC_scaffold_1 112851214 723 - 233722169 CAGTCCTCATGCTTCCCTGAGCTCCAGATAGCTGCCCCTGTACTTACCTAACACCACATGGCTTCAGGATTCTGTGTAAGCtcctgccatgagccaccctatC-TCAAGAGCCACCAACAGCTCCTAGAAAGCTAAGGTTCCAGAGAAAGTGAAGTTGGAATGCAAAGAAGGAATCTGCACATCTTCAAGTAAAGGGgatctccccccaccccaaccAAAGCCTGCTGCTCCCCAAAGAGGCCCTA--GAAACTGAAACTCTCCCTTAGGTCTTCCATCCAGGGCCAGGGTCACC-CTCTCACAGTTTTGTCTGAATCAGGCCCAAGAGTTTcg-tcaaatg--------------------aaga-------aaaatataattagtcCTCTT-TAACACA----AAGAACAAGCAATCTCCACGCAG-------AAAGACTCAGCCCTAGGAAAGGCAGAGCTG--------GGTGCTTCATCACAATGTGTTAAT-AGCCGGCAGTCAAGCA--GGGTGGGAAAGGCTGttctggaagagaaaagagaagctgGCTCTTATGGTTCCCGGCCCCCTCCCCAAACTGGCTCTGATTTTGACTTCCTTAGGGTGAACCTGATTTTTTAAACAAGATTAAATAAGCATGGGGTttgacagaaagaag------------------------aaaatattttttcttcccaaagatcctaaacaaataatataaactaTAGGAACTGCTTTAACTtagtaac----taaa-----aaataaaatctttcaagcTAAAAATGTCCAGTGGGAAA

a score=28127
s chr3           102690106 3067 + 160039680 AGCATCCCCTTGCCTGTTATCACTGCCTTCCGGTGCATATTTCCAGCCATTCACAGACATCTTGACAGC---CATTTGCTTCCACAGCTCTGCCTCTCACAGA-GTTGAA---CTTAAGTCACTGTGCTTCAGAAACACTGGCAGCACCGACTCTG--TTG--CAAAACATAGGATGTTTTCAGCAGATGTTTGTGAAGCTAA--------------AACGGTTCTGATTCTACGCA-GGTGATGCAGGATGACCCCTTAGTGGTCAGGAGGAAGGGTGA--CAGGATC--CTGGAGTTAACTTAGCTACTAGAAAGGATTCCCCATCAGGCAGACCAGAAGCCCACCATCTCCTTGTGCACCCCTCCTTGGCACACACTAACGTTGGTCTCCGGAT--------GCAGCAGGTAAAACAC-CCCGCTGGCCTGGTAACCTGCCGTTTTAAGGAAGCCACAGACTTC-AGGATCGAAAGGGATTGTAGAAGCCACAGGATCTCCTCCAGA---------------GATGCTCAGTCAAACTCAGTGGCTTTCACGTCATAAAGGAGGCATCCTGCCCTTGTGAAATGGGCTTCACTGTTATTTTTTAAAGAATACTATGTGAACATTTAGCCTCATTCATAACAGCTACCCTTCACAGTGCTCCATGGGGCTTCCTGCTGGGAAACTACACTTAAATTCTCATGTTTCATTCTGAATATCTTTTTGGAGACAGTGGGGATTGTTCAAGGGTGACCAGGCACCCTTGAACAACTGGATAGTTGTTACACCATGTTCCTCACTTAACCCATACAATCC---CAGAGTTCCCTGTGCTCCTGACTCAATAAAGTCTCACTTAAACAAGACTCTAACAACCAAGAATGGGAGACAATC-------AAAATGTTCTGGGATTTTTTTAAGATTATTAAAAAGCAATCAAATAATAAACCATAGGTATTTTTATAATCTTCTTTTCCCATGTTTCCCTTT-GACCAAGGTAGAGCCTCCTCCTAAAACTCTCTCTTTGGCTGTTTCCAGCCTAGC----AGGCTGGAC-----CCCTCTCCACAATAC-CCACCCCACC----------------------------------------------AGCCTCCTG------------------ATTTAAAACAAAAAGGAA---------------AAAC-------------------------------------AAACAACAAAAACACTA---------ATCTTACTTAGTTCATGGCTTTTAA--ACTTCCTTTAGTCTCCCACTTCCCTGTCTCTGCCCTACAAAC-AAGTTCTAGGAATGCCCTTGGAATT--AAAT-CATAAACTTTAACCCCGCGTCATGAGGTGAAGAGAGACAAAGCCCCCAA------------CACAGCATCTTTCCTCTGCAGCCCCTTTGCTGACACTGATGTCCCAGTTGCCCACTCCCACCACCTG----GATCATTCTGAGAATGGC-----------CCTTTGC------------ATAATCCCcaatgtctct--aaagagaagcacacagtactgaacgcaagaatgtaagtgtagtttcccagcT--GGGCCCATGGA----CCATGAAGAGGGGCCGTTACGAATGAGGCTGAAGACTACA----------AGTGACA-----------------------CTTATTTCACATCTAGGCG--------------------------TGTGCCGCGAGATGTGCACTGATGGATATGTGCCC---------TGGTCAAGGCTAAGCATT--------GCCTGGCAACCCTGGGAACATGTTCAATTTGAGGGTCTCTCA-GGCAACCCCAACCCTCCTACCAAAAGCATATGTCCACTAACATAGCAAAGTAATGCCTCATGTTGCTCAGAAACATTA-AAGCAGCAGGAAGGCTGGAACCCT------------CAAAGCTTGTCAATAATTAATATTCA--CTGATGAT-TTAAACCATTTCTGGTCAGAACTAA--GAAGTGAGAAAGGGTCTGTATTTGCTGTAGCCAAACATTATGTGTGTCAAG-----CATGGCGTGAGAGAAGAGTACATAGAGAAA-AAAGGATGCATCTGAAGAGACTGACAGGAGACCAGCAAGAAGCCAGGCTGCCAGATCCTGAGTGCCTCTG----------CCAGCCTCTCTCACAGCT---------GGTTGAGGAGCCTAG-----------------GAAGAGCACGGCGAGAGTGCCCTCTAGTGGAAGGACCCAGAGTTTGGCTCCCCTCTGCTCTGGGT---TTAGCCTGGGTTTACATTTTCTGTAA-CTTCTTCACTCACTTATTCAGTAGGCACGGGTTGAATTCTCTTTGTGTGCTAAACGCCACGATGAACGCC-AGGGAAACATATCACTAAGACTTGACCATCACTCCCAAGAGAGTTTCAACCAGGTGAGGAGATTGGACAACTCCTGGGAGGGGTGCatgcatgtgtgtgtgtccctgtatgtgtatgtatgagtgcatgcatgcatgtgtgcacatatgtgaatgtaagtaagcgtgtgtgtgcacttgcgcatgcatgtgtgtatgtgtgtgtttgtgtgtgagtgtaagtgtgcatgtgtaaatgtgaatgtgtgcgtgtacgtgtgcatgtgtgtgcatgtatgcctgtatgtgtgtctattgtgaGGCTGTGCAGAGGTGGTGAATCAGGAGGATCTGCCCGACAGATGTGACCCTCAAGCTGAGAAGACGTTTAGTTGACAGGCAAGTGGACTATAGGTGTGTCAGTCAAGACAGCTGGGGCTAAAGATGCTCTGACCCATCTGGGGAGAGAGAAGGTGA-----AAAGCCAGAAAAG--GCTG---------AGAGGATAAGCCTATG----GTTTCTCATTCCTTTA-AACATGACAGGAAGCTAGACAAGCAGCGAGCTATTTTACAGATTCACGAATGCATTACTCTGAT------------------GGAAAGGGAACAGAAGTTGATCCTCAGGGAAACAAGACTGAAGGCCAACAGAAAATGAGGG-TCTAAATTAGAACCAGGAC-AAGAAGCCGAATGGAGGAAGAGATGTGGTAGAGAGCAGGTCAGCAGGACTTGCTTACAGAGTGGGTGTGGCGAGGA------GGCAGGAATGGGAAATTCTCAATCAAGTCCCAGCTCCAGCTTGTGGGGAGGGGGCGAGCTTGATGGTGTGTTACTCATTAAACCAGGGATGGGG----AGAACGTATATGAGGAAGAC-----GGTAAGTTCTATTTTGAATATGGGGAATTGGATGTGGCTAAGAG----------GAAAATTCTGGGAGGTAATTGGTAATTGACTGTTTAGTCTGCAGCCTGGGGAATTGATCTAAGGGTTGGCAGCAGTGTATGGCATGGGAAGGGAAATGGCCTTCCAAGGGAGCAGCCACCATAGAAAGAGAACAG
s HiC_scaffold_1 112853716 2953 - 233722169 AGTTTTCCCTCAATGGCTGTCACTCTCTCCTGCTATATACTTCTGTCCTTCTGGGGGC-TCTACACTGCAATTATTGGCTTTCTTGGTCCTATTTGCTACTGATGATGAATTCCTCAAATCACTGTGC--CCATAGTACTGTGTCCCCCATTCCTAGATTGGCCTGTACATAAAACGCCCTCAGCAGGTGTTTGTTGAACTGCGTTCATTTTTACTTAATTATCCTGATTGCATGCACAAAAATACAGGATGAATTCTCAATGATTGGGGAGGGGGGGGAACTAGGGTTTACTGGGGGTAATTTA--TGCAGCAAAGAACTGTCTAGCA--TAGATTAAAAACCcatcaactcttttgtattttcaactttttacAACTCCACATCAGTTTGTAGAATGGGCAGAGAAGAAGGTAGATCAGGCAAACTTGTCcaataatttgtaattttaattaagTCACAGAATTCCAGGATTGGGAGGGACCCTAGAAGTCCCTGAA-ATCTTCCAGATCTGCATCCCTGACAGAAGTTCATCCAAGCTCAGTGGATCCT-----------GACGCATCCTATTCTTG------------------------------------------------------------------------------------------------ACTGGAAGATAATGCTT-----------------------------------------------------------------------------------------------------CCTCATTTAATCCATATGGTTCATCCAGAATTGTTTAT-CTACTGTCTCAATAAAGCCTCATTCAAACTACAATCTG----TCAAGAATAGGTAAAAGTTCTATTCAAAATTGTCCTAGAACTTTTC--AGATTATTAAGAGGCAA--AAATAATAAACCATAGACAACTT-ATAATCTTTTTCCCCTATCTTTTTCTCTCAATCAGTGTAGAGGCTGC----AAAGCTCTTCTTTTGACCATTTCCAACCAAGCCAGAAAGCAGGCCAAAGGCCTCCTCCACAGTACGACACCCCACCCTGCCCTCTTACTGCAGATactctgtaactttttttttcttgagacaacctcttgctatgcaattcaggctggacttgaagtcattatgtagcccaagttggcctcaaactcccaggaatcctcctgcctcagccttctgatttctgagattacaggtgcactACCATGACCAGCCTCtctaggtttttaattttttgtcatttcctcttttaccctATTTTTCCAACTCTTTTTTATAAAAGAAGTCCCAGAAGCTTCTTTGGTATTGGAAATGCATAATTT------CTGTAACTTGTGGTGGAAACAGA---AGTACCCACATGAGAGGAAGCCATCGGATTTTACCTGT------TTTTTCCT--CTCCAATCTAAAGAACACCCACCCCATCCACCAGCTTCAATCGATCCTCCAATGGCACTGGTTACCTCCTTTGATTCGGTTCATGGATAATTTCTACTGTCTTTTTAAAGAGAGATGCACAAAGCTGAACACAAGAATTAAACTGTGGTTTCCCAACACAAAGCAAGTGGAAATGCAATAAGAAAGACGCGTT-TGAATAAAATTGATGAATGCATAACTGTtacagtgttaaaaaaaaaaacccaataatacAGCCCAATTCAAAACTGGACACTAGTTTTCAGAGAGGTCACCGTCATTGTGTTGTGATTGGCATGCTGATGGAGATGGGCCCCCATCAAGATAGTCAAGGCTGAGCACTCAAAAGTAGACAGGCCACCATGT---CACGT--GGTTTAAGGGACTCTCACGATAATTCCACtcctcccaccaaaaaaaaatgcCCATTACCAGTATGTATAACTGTCTTGTGTCACTAAAAGATACCCCAAGCAATTGCTGAATTGTAACATTGtcaacaggaaacagaaagtgTTAATAATTAGTGTCTAAGCTCAAGTTATCAAGATTTTATCAGCTACCACTAAAGGAAGTAAGGAAAGGTCTGAATTTATCATAGTTGAAATTTGTTTACTCCTTGGGGCCCATAAAATGAGGGAAGAATACTCAGGGAAATAGAGGTTATATCTGA-GAGAATAATAGGAACCCAGGATGGCTCTGG----CCAGAGCCTTGGTGTCTCTGGGGTTCACTCTCTGGCTCTGTAACATCCCAGGAATGAGGCTCAGATGTCTGGACTAGCTGCTTCCCTGTGAAGCACACAGCCAGAGTGCCCTCTAGTGGGGGGAACAAG---------CCCTTCAAGT--GGGTAGGTCAGCATggatttaaatttctcttaatcTTCCTCAGTCATTCATTCAACAGACAATGGCTGAAGTCCCACCATGAGCTAAACACACTGATGAGCTCTGAGGGGGAGACACGAATAAGACATGATcattgt---------------------------------------------------------------------------------------------------------------------------------agtgtgtgtgtg--------------tgtgtgtgtgtgtgtgtttgtctacAAAGGTAA-----------------------------------------------------------------------------------------AGGTGGTGG-TCTGGAAAGTCT---------------TCCTCACACTGAGGGCACTTCTGCCAGACAGAGAAAGGGACC---GGCGCACCAGGCAGAACAGCACAAAC--AAGACATTCTGTTCCATGAGGCATGAGAGGAGGTGACGGTCATGGACAGAAAGGCAGCTGGAGAGAAGAAGAAGGTAGAATCATAAAGAGTTTGGGCTGCCTTTCTAAAataacaggaagccagagaggcattagcccattttacagatttctaaaaagatttttttaattaaacaaaaatcacCGTGGCAAAGGGAAGAGAAGTTCAACTGCACA-AAACAAAACTGACTACGCACAGAAAATGAGGGCTTTCAGTTAGGGTCAGGATGAAGGAAAAGTAAGGAAAAAGAGACGTGAAGGAAAGCGAGTCAACAGGACTTGGTCACAG---------GTCGGGGAACTCCAGGCCGCAATGG------------------CCGGCTCCATACTG------------------------ATGTCATTCATCAGACCAGGAATATCGCCTAGGAAC--AGATGAGGAAAACAACGTGGGGAGCTGAATTGCCAGCATATAGAATTGAATGTGCCTGTGAGACAACCAAGAGGAAATTCTGAAAGCTAATTGGTAATTGACTGTTTAGTCTAAAGCTCTTGGAGCTGATTTGGGGGCTGGCAGTAATCTGTAGCCTTCGAAGGGAAAAGATCTCTCAAGGTAGCAGTCCACATGATGAGAGAAAAG

a score=29076
s chr3           102699488 1456 + 160039680 AATCACCCACATTCCTAATCAGTGGTTCTGACCCCTTCAAAGATCCTAGAGACAATCCCTAAA--GAAGTCAGCCATCCTGCAGTCAGAATTCAC-CCTAGCGATGAGGAAAC-CACAG--AGGAGTC-GGGCAGATGCTGGGAGAGCCA-AGAAATGAGTTTCCAAATGGCATT----------CTGGAGGCACCTCA----GGGCCAAGGGACTCTAATCTAGATGTGGCCTATT--------TCCTCCAAGTCCCTGGTAATCAACAAGTCCTTTCTAGTAGAGATGGGTTGCTTT-GCTCTGTGGACCA---TCCCGTG----------AGGTGAGAGATTATGACGATGTCTCGAATCACAGGAGTGG-TCTTTCCCACACA--CTTCCACTGAAGAGCAGAGGTCTGGAACCCAGGAAAAAGGG----TCATAGAAGCATCAACTTAGTGCCAGTGAAGACCAAGCTGCAAGATGGCCCATCTCCTCAAGGGA-----------------AGCCCCCAGT-TCCTCCCCTTGGGTGACCCAGGCAAAGGAAGTTTCCATCGAGACAGGGCCTGACTCAACCTCTCCCAAGCAAACCAGACACCAGCCACCAAACAGCCAGCACAAGAGTTTCCATAATGAGATGCTTCCAGGAAAGCCCCATAAAACCTTTACTGTAAATTCAATAAACTGGGTTTTGCACATGGTGG--GGGTGGGAGAGCCTGGAGCCACACCTCCACCTCTA-ACATCCCCTCTCTTGTCACACACAGAA-----------------GACAAAGATACAAGCCCACCCTTCTCCCACTGCCAAGATCTTTCTGTCTCCCAAGTCACCTCAACAGACTCTTCCCCACGCAAC----CAGCACCACCAGACCAAGTCTAGCCAGGCACATAGACAATTCTGCTGAC-------ACTCTGCCTTCGCCAGCCGGGAGGGAAGAAGCCAAGCCCTCACATCCTTGCAGGCCACCAGTGCTCAGGGATAGAGTTGTTACAATGTTACAATGCTCACAGTTCACAGAACAGGAGCCACCT-GGTTCAGAAAAAAAGAAATGCATCCCCAAACCATTCATTTCCAATCAAGATGTTTGGCCTAAGGGAGAATCGCTACAGTGT-TCCCTCTGTCC-----------ACCCTTCACTAGGTCTTCCTGGGCCA------TTCACTATGATCCACACTCCAAATACCTCACCCTTGACACTAACACTGAGACCCTGAATTTTACTcacagacac-------acagacaca---cagacacacacacacacaaacacacacacacacTGGCACCCCAGGGCTGAGCTTGCAATGTGTTCAATGTGAGCACCTCAG---CCTGGACTGTGTAAAGA-----------CGCAGGGAAGAGCAGGCCTTGGCCTTGACTGTTTGGAAAGGTCTTGGCAGACCTTGCGCTGGAAAGTGAGGTGGATGGACTGTGTGGAAGGGAG--CGGTTTTACCAGCACAGGCTAGAAAATTAGGACTTGGTGGACACGCAGAGCCCTCCAAAGCATTCAAAGCCGAGGGCACCGAGATGTCAGGGCTCATACA
s HiC_scaffold_1 112863239 1502 - 233722169 AATTACCCACGTCATAAACTAGGCTTGCTGGCCTTTTCAAAGATCCTAAAGCCAAAGCCCTACTTGAAGTCAGGCATCCTGGA-CCGCAAGGCATGCCTAGAAGTGAGGAGGTACAAAGTTAGGAATCCAAGAGGTTGCTGGAAAAAACAGAGTAAGGAACTTGTAAGGAGCAGCAGAGGAAAAGTTGCTAGCATCTCACACCAGGCTGAGA-ACTCTAATCCAAATATGGCCCAGTGAGTTGTGTGTTCCCAATATTCATAAATCTAAAAATTCATGTTTGTAGAGTTGATTTGTTTTTGCTCAGTAGACCAGCATCTcatgtttttcatatatgtaaaaattaatgaaaatggttCTAATAATAGAGGTGACTTTTTCTCACCCAACCTTCCCCTGAGGAGCAGATGTCTAAAACATGCTACAGAGTGACTTTCTGAGAAACA--AGCTGGAGCTCACTGAGGACCCCAAGGGCAGAAAAACCCTCCCCTCCAAGAACCTAACAGGCCCAGTTGGGCTCCCAACCTCCTCCCCTCAAATGACCCAGGCAGAGGAAGTTTCCATCAAGAC-GggcctgactcagcctctcccTAGCAAACCAGACACCAGCCACCAAACTGCCAGCACAAGAGTTTCCATAATGAGGCACTTCCAAGAAAGCCCTATAAAACATTTACCGTAAATTCAATAAACTGGTTTTCAAACATGGTGGCTGAGCTAGGAAACCTGGAGCCATACCATCCCCTCCACCCATCTCTCCTATCCTCATGCACAGAAGTGGGCTGTCCAGCCTGGACAGAAAAACAACCCCACTCTTC-ACCAGTGTCAGGCCCCCCCTGCTCCCCAAGGCAACTCTCCATACTCT------CACAACACCACAGTACCGCCAGAACA--TCT-GTCAGTCATACTGATAGCAATGTGGATAGAACCAAACCCCACTCAGCCATTCTTGTGGG-GGAAGCCAAGTCCTTGGACCTCTCAAGCCCATTGGTG------------------------------TGCCAAGACCTCA-AGAACACCAGCCTCCtaagatcagaaaaagaaaaatgcaccc-------------TTTAAATCACTAGGTCCAGGCCAAGGG-GCAGAGTTACAGTATCTCTCCATGTCCTGGTCAAACAAACACTCCTTTATAGCCCACCACGCCAAGGTTCCCCACCCTAATTCATACCCCAAATGCCTCACCCGTGACCCCATCACTAATACCCTGAGTTC--CTCATACATGCTATTTCTTCCCCCACATTTCAGCCTCTTACCCA---AATGACAACCTCATCTTGTCCTTTCAGGCATGGGCCTACAG-------AAACCAAAGGCCTTGGGCTTCTAGACTCTGTAGTCAGCTCTCTCTCCACCAGGGGAAAG-------------TGGTTATCGGGAAAGATCACAGCAGATGGTatgctgaaaaacaaaat------------tgaaagaaaggTTGATATCCCTGGAAAAACCCAGGAAATTTGGAATTGATCAAAATGTACAAATCCTCAAAAC-TTTGGATAAGAGAGGGTTTAGATGTCAGAAGTCATCCA

a score=34902
s chr3           102701179 1659 + 160039680 GCTTGAGAAGCAGCCTCCAGGAGACC-CAGTTCCCAGCAGGCTCTACA-----TTCACAACCCTATCAAAAACTGGGGGGGGGTGGGGGGGAACAACCCTTCTCTCTTTGGGGGGTAGGGTTTCACATTCCTTCCCTGCCTCTTTGCTGGAGGACCACAGAGTCCTCAGCTGCAATGCAAGCCAGTCGAGAAGACATCCCACCCC--------------ACTTAGATTGTGGACATTTTCCAGATTTTTTTTAAACTGCTTATTTGGGGAAACTATTTAACTCTAGGCCTGGCCCAAGGACAAGCTAGTCAGCCTCCACAGTTGGAGAG--TCCAGAGGGCAGCCAGGCATCTGCCTGCAGGCTTGGAGGGCCCCCGATCTGCCTGTACTTTTCCGTGAATAGGAGGGAGGGGTCATCATGAGATTGGCTTTCCCAAGAAGGCTGCCTGGTGGCCTGGCATTCTGAAGGTTTTTCCAGCCAGATCTGGGGAAGTTCCTGAAACCAGACCGAGCTGTGCCCAGGGTTCCTGATAGGTGTGTGAG----TACAGGCAACCTTGATCTC------CTGAGGGTCCTACTCC---CAAACTCCACTTCCTCTCCTGGAGGAACCTGCAATGG------------TAGATCTTTACC------TGCCCATCATTTGCAGATCATAAGCACACTGGGCACTGGGCCCCACCAGCCTCTTCTCTAGCCTATGGTTGTTCTTTGAGGGTGGGTCCAGTCAGGTAAGGGAGCTATCTCAAGAAAGTACACTTCTGCCCCAAACAGAACAGGGTGTTAAGATATCATAGAGGTGGCCTCGGCTGTATGAAGACCCAGCTAACCTCTGGAATTTGGCTCTGACATTCTTGCAA-----TAGGTGGCGCTAACACCTAC--TAGTTTCTGAGCCTCAGCAAGCTATTCTACTTGCCCCAGAGGATGGTGGGTAGGATTCGTCTGTATGAGGAA------------GGTGGACACAAAGCTG----TTTATCATAATTATGAACACCAGGGG----------GCGCCAGGCCTCGTCTCCATCCTGACTT--GACTTGTGAAGGAAAAAGGATGAAG----ATTCAAGAGGCACCCAGAACAGCACCAAAGGACCAATCCCCAGCTGTGGGCCACACGGGACAGCCACCTTTAGGTGGTCAGGTGTACAGGGGAAGAAGAGGTTCTAGCATAGGCCTACTCCTGGAGAACTCAGAGAAACT-GGAAGCTCTAGGGAGGCCACTTGGGACTCAGAAGCAGAC-TCCAAATG--------------TGCCCTGGACAGGACCCAACTTCCTGTTGAGCTGATTGGCTGGGGCAGCCAGCCACTTTCCACCCTCCTTCCCACCAGTGCCTGCCTCTTCCTGCAAAACCTTGGAATAAAACCGTCATACAACACAATG-TTTCCTTAAGTGCTGGTGTATTGGACAGTGTGTGCAGTATAGTCATTCCAAGTATGCTATTAAATACGAATATTGGTCAATGAGTGGGAGGCCATATTCC-AGATTATTAGTGA--------TGCTTTTGAGCACCCCAACTTGAG---ATTTTAAAAAATAATAAATTCTACATGGTGCTTTTCTGCATTTTCCAAGTGAGCAGATTTATATTTTATAATCATAAAATCTGATCATTTTTAAGTTCACCAATGACCTTTTAGCACATATATT-------GGGTGCTTCTGATTACATACCTTCGATTACTCCTTGTGACACATAGAACAAAATTGTGACTCCTT
s HiC_scaffold_1 112865558 1671 - 233722169 GCTCATGGAGGACTCTCTCGGAGACTGCAATGCCCAGCTCACTCTGCACGCCCTTCCCAGATGGAGCAGACAGTAAAAGGTACAGTGTGTG--------TTGCTCCTGCAGGTGACAGAGTTGCACATTCCTTCCCA----CATCGTTGCAGAACTGCTGAATCTTCAGCTGCAC-----GCCTGTCTGGGAGACTTCCCACATCTACTCACTGCAAACATTTGGGTGGTAgatattttccacatttttt--aaactgattttttgG--AAACTATTTTGCTACAGCCTTGCACCAAGAATAAATCAGCCAATGTTTGCAGTTAGAGAGAGTCCAGAGGACAGCCAGGCATTTGCTTGAAGGCTTAAGGGGCACCAG-CCCGCCTGTACTTTTCCATGAATAGGAGGGAGGAGT-AGCGGCAGATCAGCTTCCCTGGGAACACTGCCTGGTGGCCTGGCATCCTGGAGATTTTCCCAACCAGTCCTGGGGAACTTATTCCAACCTGATCCAGCTGTGAAAGAGG--CCTGCTGGGTACGTAAGGATTTAGACTCAGTCCTGATCTTAAAGCACTTGTGGTCCTGCACCCTGCTAAGCCAGTTTTCTCCCTCAAATGGATCTGTACTTTAGTTCCTCAGCCTGGATTTCTGCCATGTGGCACCCATTATTTGTgcattctaaataccctgtgctTTGGGGTTGGCCAG-----TCTCACAATATTGGTCATCCTTC-------AGCCCAGTGAAACCTGGGGACAG----ACAGAGGCAAATTTCAGCTTCA-------------------ATATAAGAGATATAGAC-------TGTGAAGAAGCAGTGGAACAGGAACACTCAGGTCCAACAACTTTGTCACTTTCTAGTTGTTACCTCCCTCTGCTTTAGTTTCCTGACCAGTAAAAGGGATTATACTTACCTCAGAAGACGGGAAGGAGGTTTCTTTTAAAGGATGCATCTAAAAACACTGCCTGATACAAAGTTGCTGATTTGCCGTGATTATAAATGAGACAGGCTGAAGCTTAGGACCTGTCCATTTCCTCACCCTGGGTTAGGACCTGTGAAGGCTAACGGGGTAAGGGGAACACGGGCAGCTTGTGAAGCAGCACCCAAGGACCATTCCTCCTCTG--------------------CCTCTTATGGGAAAGAAGtgcaggggaaggagaggggCT-GCACCAGCCTGCTCCTT--AAACTCAAAAAAAGTCAGAATCTTCAGAAGGCTGACACATGGCCGAAAGGCGGCCTTCCAAGTGACAGTTTAAACCCATGCCCCAGACACAAGGCAAA-CCCTGCTGGGCTAATTCCACTGGAACCTAAGCTTCTTTCCATCTCTCCACCCGCCAACATCGGTCTCTTCCTGCAAAACCTTGGAACAAAACTGCCACTTGATACTGTATTTTTCTTAAGTGCTGGTTGATAGAATGATGTGTACGGTGTGATCATTCC------------AAATACCAACATTTATAAATGATTGTTAAGAC-TATTCCAAGGTTAACAGTGATTATCTGTTGCCTGAGGGGCATCAAATTAGaggcaatttttaaagtt------ttctgctTGGTGCCTTTGTGTGTTTTCCAAATGAACACATGCAAGCTTTATGATCATAAAATATAATCACTTC--AGTTCATCACTGGCTTTTTAACATCTACATTAAATCACGTATTCTTCTGAT----TATCTTTTATTGCCTCTTGTGACACATGGAATAAAATTCAAACTTCTT

a score=14069
s chr3           102714010 2755 + 160039680 CATTGGAAAGCCGGAGTCTCTGAGCCATCTCTGTG--CGCTCCTGGCTGAATCCCTCCCTGGCACACACAGTTTGAAGTATTGAGGGGACGGCCCAGGGACTGGCAGCCAGCTATTTATATTCTAGCTGGAGCAGAAGCAATGCACCCTGGGAGAGAGT----CCCGAGTAGTACCTATGGGGGTAAGAAAGGCTTGAGTCACACAAATG--AGGAGGAACCCAAGAGACAGTGCGTGCTTACAATATAGAGTAGTGGGCGGTGGCCTTTATTCTTTGGAAAGAAGCTTTGGGGAACCTATGACCTCTAGGACTTTAAGAACATGGGAACCTGAAAGGCAAGGAAAACAAGAAGCCCAGACAAGAGACGGAGCATGAGCTGAAGATGTAGAC---------------GCCTCCTAAGGcggtggctctcagccttcctgatgctgtgaccctttaatacagttcctcgtggtgt--ggtgacccccagccataaaattatttt------------attgc------tactttatg-actttaattttgctatctttatgaattgtaatgtaaatttcta--cgtcttcccatg----gtcttctgcgaccctgcgaaaggggtt--------gagtctctattcaaagg----ctgagagcccctgCCCTAAGGGCTGAGACA-AGCCTCTGAAGCTGGTAACAGGAGCCCAGGACCACTGCTCTAGGACAG-TTCAGCAATGTAAATAAGAAGGAAACTTAGCCTCTCCAACCCTG----AGGACCTCAAGTGGCCGGTA-------GCTCTCAGTAGACTGATGAAACCCTTCCACTTCCTCAGCCCTG----AAGGGACTCCAGTCTCTGGTGACCTGCTGTAAAAAGCCTGAGAGTGTCAAGGCACCTAAGGTGGATTCAGCTCCCACCGCGATC-AGAAGTA-TCCATGCTGCCT-GCTCAGAGGAGGCCAGGAAGGCTGGGAGTGGCCT-TAACAAAAGGCCCAA--GTTCTCAGAAATTAGAAAGC----ATTGCGTGCTAAACCACGTTGATTGCTCCATAAACCGACTCCCTTAATGCATAAACAGCAGTGTGAACTGAGCACTGATGGCT-------ACCGATCTTGGACCCACTCGCGTGGA-CAGTCAATGTCTTG----TTGAGGAGACGTGAGACAAGCACTCCCA----GACAA--TGA-----GTTCTTGAG--TTCATGAGATACACGCAACTTG-------------TCAAGTCCTTGCAATGCTTCTTTCTGACAGCAGGGGGGAGCCAACACCT--GGTAAACGCCCGGGCACACTAAACCTTGCCGGTGCAGAAGAAACTGCCAAA------GAAACAACCAG--GAAAT-----GATACCTTGGAAAGAACTGAAACCCAAG----CAGGCTGGAAATGGA----------GGCAGCTCAGGCCCAGGTTTTGTAGGTGTTGCGGCCAAGATTATCG--ATCCCCCGAGTAAAGCAAATG-TCAGCTGGGGAAGTCCAGGCTGGCCTTTAGGGTGACT---GTTGCTCCGTATCTTACTCTAGCACCACAGACAAAC-ACAATCTATTTCCTCTTTCTTTCTGTCGTGTCTGAGCTCACTCCGGTCAGGGCTA-AGCCAAGCTCAGAAGAGGCAAAGACCTCAGGAAGGAAGTGGAAGGGGATTGGCTGGCTTCTTCCAGTTCAGCCTTACTGCTTGTCACTAACGTGTCTCCTCATATTCAAATTCCAACCATCCGGCTTTCTCCTCTTACTGCAGTATGTGGAAGTGTTCTACCTGGAAGAGAAAAGCTCAGGCGATCT----CTCTATGCTCCCATTTTCTCCTTTGTGAAAGGAATATAAATATAAATATATTCGATGACAAAAAAGAAACCTGGACCGTGAGAGGCACGCCTCCAAGAGGTGAGAACAGAAGAAGCTACGAGAGCCTCCTTCTATCTCAGGTGTCCACCTCTGCCAGAAAGGGAGCCGGAGCTGAGCACTGGACCGACAGCCGACAGGCCTCGCGCTGGTCCCAGCTCTGCCTTTAATACCTTCATAGAGCTGGCTGAATCCTTTACCTCTTAGCATGACCAGAAGCTGTCCCTGTTCTGGGACCAGAGGAAGGCAAATGTGGGAACCCCGTGAGAG----------CACAGGCTCTtagctgtgtgaccttgaatgtgttgcttaacctttcctagcctcaggttcctcttca-tcaaacgagaagtggggggatgg--aatgagatgagatt----------tagtg---ggtccttAGTGGTGACA-AGTGATAGC--ATATCCCCTCACCACATTAAATA---ATAGATGGAGGCGCACCAGTTGGCTGGTGCCTGCAAAGTGTCAGGCAT-------TATAATGAATTTCAAAAGTCATAAaatgataa-----atttttttggattttatgctcatttagcag-ttttctgcttgctttgacagtcatt-tctttgcacatttaccagaaacaggtaatattcagcaagacacacttcactatcatttaaaggatgaaaatactaagattcaaggagattaaatgaattagctaaagtc----cagccactcaggaaaagaaccaggaaa-aaacgactcttcataactctaaTTACTACCTTCAAGGATATAATAATAATACTATCATGAGATGGGACTTAAGAGGAGACCCTAATCAAGTTGTATAGAATGAA-GTCAAACAAGGGCACAACCGGGAA------------------GGGGGAAGCATGTTTGCTAGAACCATGG-TACGTGTTTGATCAAGCCAGCAGCCTTCACTGTCCACTACAGGCAAAAGCCCCAAAGAGAACAGACGGCACTTGGCTCTCTTCATGAGAGAAGAAAGCTGGTACCACAGGCTCATACCTCAGATGAATTATGAACCTTATAAACACATTTACCCCAGCAAAATG
s HiC_scaffold_1 112884259 2529 - 233722169 CACAGGAAGTTCGGA--CTTTGACCCATCACCATGGCTGCTGTTGGCTGCCTCCCTGTGTGGTGC-------TTGGAG-----------CAGCCCAAGGGTTTGCAGACAGGTACAGCCACTGGAGCCTAAGCAGAGGGAGGGCAGATGGGGAGAGAGTGGATCCCTAGCAGCACCCACAGGAGACACAGGGCCAAGAATCACACAAATACAAAGAGGTGCCCAAGACACAGTG--TGCTTTCAAAATAGAGTGGCAGGCAGTCTTC-CTAGACCCTAGAATGAACC--------------AGCTTCTGGGGTGCTGGAAACCCAGGAACCT-AAGGGTTAGGGAAgccagaaaacaggaaaagatagCCATCCAGAGCTGAACCCACGGGCTCTGAAAGGCTGAGTACCCTGTGGAGCTGGGGCTCAGAACC------AAGCTGCCATCTTTACAAGGAG-----CATGGCACCAGGAGGCCCTCAGGCAGCTCTTTATCCTGCACACCCACAGATTCCCCAACACACACTAGGAACATTTATCCTAC-------ATAGGACAAAAAGAAGCTGGCCAATCGTTTTCCACTGTCTATTCTCCTTTAATC----------AGTTCATTCTGAGTGCCTCCATCGAAAGGAGACTAGAGATTCATCTTCTTAGAGGCCAAGGTACAGCCTTC--AGTTAGG----------------CATTTTCCAGAGACAGTTTCAGCAACAT--------------CTTGATCTCCACAAGCCAGTGCTAGCTTGTTAACAGACCAGGACTGAAGTCCTCTCCCTAGCTC-----AGGCCTTTCTCTGCCTCAGCTTTGTGCAGTAGGCCTCC--TTCCTGGTGTCCTGCTGCAGGGAACACTGGGCTATCTGCACACCTGGGG--------ACACCTAGAGCAAGAGAGAAGCACTCCGTGCTGGGTCGCTTTGAGGAACTTGGGCAGG-TCAGAGTGCCCTACAACAAAAGCCACTGCCATTATCACTACTTATAGAGCACTAACTATATGACAGGCAATATTAAGCACTTCCTACACTAA-TTTAGCAATGTAC-AACAGCCCTGTAAAGTGACCGCTGAGTGCTTTGCAGGGAAGACcttgcagctgcaggcatctacCAATCTAGACACTGAACACTGAGGAGAAG------AAGGAATCCCACCGCGCCAATTTGATTGCTGTCATTAAGGATTCTTGAGAGGAGAGCACTGTGGTGGGGACAGAATTCAAATTCTCACAAAGCTGATCTCTGACAGCA-GAGGGCGCCAATGTTTGAGGAAAAACCTCTGGAAATCCAGGCAGCATTGGtgcaaaaaaaaatatgaaaactgaTGGGAGCACCAGCTGGGATTCTTGGGTCCCTC------AACTGCAGACAGGGATCACAGAATGTAACTGGACCGCGAGGAGGAAAGCTCAACCCAAGACTGAGTGAGCCT---------ACTTATCAGCATGCCCAGAGCTCAGCAAAGGTTCCTATGGGGAAA---AGGCCTGTCTTTGGGACTCCTGAGGTTTCTCCTT-TGTCAGTGCAGCCTGCAAGGCAGACGATGAcctgtttcctctttccttcaGTGGAGCATATGCTCGGTCAGGTCACACCCACACCCAAACTCAGAGGAGACAAATATCCCAGAGAAAAAACTGAGGAGA---------------CCAGTTCAGCTCT-----------------------------TTCAGGTTC-------------------------------ATGC----GTGTT-----------------GCTCAGGCTATCTTcaacattttgttgttgttttgctttct--------------------------ttcgattattgcaaataaa-------------------------aatagacatgACCCAGTGTAACT------GTCTCTTTCC----------TCCATCT-------------------------------------------------------------------------------------------------AAacctttgcttctt--catttctgaAAA--GTCACTGTACT--CATTAAATGAGGGAAA----GGAAGCCCCTTCCAggtgcccccacccccaccccataaACAATGTGACCTTGACAAGGCTACCTGAACTCTCCCAACCTGGGTTTCCTCCTCAGTCTCATGAAGAgtgtaaagacagaaaaaaagataacattACGCTTTACCTGGAGTATGGCTCTTGGGAGGAACATGGTGATAACCAGTATTTCATTTCCATATGAAATAAGGACAGACAGAG-----TAAGGTTCATGGTATTTGGACAATGACATAAATAAGCAAATATGATGAATACTGAATctcataaaataatgataaatacttattatgttttcacatcCACTTACCAACTTTCCCAATCTCTGTGACAGTCATTATCTCTGAATTCTCACCACTACCAAGCAGTACTTAG---AACATGCATTATCCTCATTTCAAAGATGAGGAAATTCGGGTTTAAAGAGATGAAGGGAATTAGCCAATGTCCCCTCAGAAATTCAGAGAGAAAGCCAGGAAACAAATGACTCTTTGTTGCACT-ATTCTGGCCTGTGAAGCTATAATAATCA---TATCATGAAATAGGCCTCAGCAGGAGAATATAATGAACTGATATAAAATGGACATTAGGCAAGGGGACTACAGAGGACCAGAGAAAGAAGAGCTGTAGAAAAGCACATGAGCAAAAATGATGATTATACGTTTGACATAACCATCAGCCATT--------------------------AGGGGAACATACAT--CTCAGGTAGCTTCATGAGAG--GAAGACTGGGAATCGaggttcatatttt---tttattttaaagataataa--------aacccaacaaaacg

a score=24489
s chr3           102723877 1427 + 160039680 TATTCTGTAATTTTTAAAGGAGCCTTTTCTAATTCACAGGATTCCTGTGGGAGTCACCTATGAGGCAGGATAAACATTTAGATTTAGTGCTCCCACCTGGACCTGGGCCAGTTCTGGTCCTCTGC---CATCTGACCCCTGCAAAAGTGAAACTAAAGCAGGCCAGTTGTTTCAAAACCCTCTGTCTAAGCCACAGGATCGGTTTGTTTTCCTGTGAACT--CTCTTCTCTGGGTCTTTGCCCCATCTTTTGAACCACC--TGTCCCCA-AAGCATACAAACAACCCTTTCTTCTCAGAAGCAAATACCAGAAGCT--Taaaa-----aaaaaaagaaagaaagggaaaaaaagaaaaGGAAGCTATTGCTGTCTG-GTGCCACTGGAAAAAGATCGCAAGAGAAGAGCCCTGCCACTGGTGACCATGGCGACAGTGTATAATCAGCAAACCCAAGCCCTTGCTTTCCTTCCTTCTCTGGGCATCCATAAAATGGTTGGTTTAGAAACCCTGAGCCCACAGACTGTTTTCCAGCAGC---TACATAGCAACCAGATCCAT---ACACGGCAAACCCAACAGCCAAAAATCACTCGTGCTGTATTTATCAAAACCAGAGTTATGACAGCAGGCACATCAGGCTTCCTCTCCTGACAGGAGGGCACACTTGACAT-CTGAGCTACCTTCTCCATTAAATCCAAAATGCTGTGTGAAatacatcagcacttcacacacatacacatatttatatg----ggtacatacatgccatgcatgcacat-gtacacacacgcacaaa------cacatatatg----taaattggtacacataaacacacacatatgggtacatacatgccatgcatgcacatgcacacacatgcacaaatacatgaatgcaaatagTtatacataaatgtgggtacatacatgtacaaacacaaatacaagtaggtgtacacatacatacatgccatgcatgcacatgtacaaacacataAATGCAATAGGTGTacacacacacacacacacacacacacacacTGCTGAGCTACCACAAAAAGAAAA--------GAAGGTCAAAACGAAGTGAAAACA-----TGAACCTTGGAAAGTCAGCAGATGGCCAAGCCACCCCTCTGCCCAGAGTTTCTGTT--AACAGTTTCCATGGCTTGGGGTTTGTGACGTTAAGCCTGAAACCCTAGACTAAAATAGTCTGTTAGGATGCCCCACCCAAACCTGCCCCATCCCAGGAGCTATAGTCTCAAGATTCGAAATAAACTCACTGTGCAAAAGAGGGCAAGGAAACACCTGTGTTTAATTTGGTGT--GGGTGTGAAGGGAATCTTCC-CAGGAAC--ACGATCACAGGCTA-------GTGGCTATGCTGTCTGAATCAGCGAGGTGCCAGTGTCTAGAGATGATCTGCAGAAGGCCAGGGACATCCCCAC-GGGGGAACAAAACTCCAGCTGAGAACT
s HiC_scaffold_1 112926107 1256 - 233722169 TATTCTATAATTTGAACAG----CTTTCTAAATTCAAATAATTCAAGTGAGAATCATCTGTGAGGCAGAATTAATATTCCAATTTAAAAGTCACACCCGA--TTG----AGTTTTGTTCTTCTCCTTACACTAATCCCctatcaaagtaaaaataaa-------aatagggtc-----------------CTATAGAAACAACCTATTTTGCTTTgagtttgctgtcttctgcttcttAGTTCCTTTTCTTGTGTCACACATGTCTCTACAAGCAGGTATACAGTC-TACCTTCTTACTAGCAAATACCAGAAGCTGCTACAtgacttaaaaaaacaaataaattctaaatagGA--------TTATTGCTGCCTGCATGTTGCTGGGAAAACATTGCAAGAGGCAAACTCAGCAAGCTGTGACCATGGAGATGGTTTGTAATCAGCAAA-CCAAGgccttgctttccttccttctctgggCATTCA-AAAATGGTTGATTGAGAAACCC-AAGCCCACAAAGTATTTTCCAGCAACAATTGCATAGCAACAGGATTCATATAATATTACAAACCCAGCAGTCTGA----ACTCAGGTCCTGCTTATCAAAGCCCAAGCTAAGGTTTCAGGCACACAAGGTTTCCT-TTCTAACAAGAGTGCAGATTTGATGTCCTCAACCACCTTCTCAAATGAAACT-------------AAATACATAAACATTTGAAATATAC-CACACAACCAAGTGtgatgtcacacacctgtaatcctagcacccagaaaactgaggcaggaagactgccacaagtttgagaccagcctgggctacata-----------atgagtttaaggctggcctg-----------------------aactacataatctcaaaaaacaaca-ataaa---------atatat---------------cAGGGAGGAGG---------------------------------------GGAGTTGCCcgagagggacagaaagagaaacagagaaac----------ctGAGCTagcacaaaaagaagaaaatatgcaaaGGTCAAAATGAAGTGAAAGCAAGAATTGAACCATAGATAATGAG----TGACAAAGCCA-CATTTTACC-----TTCCTGTTTCAACAGCTAAAGTGGCTTGGAGTTTGCAAAG-CAAGCCTGAGA------------------TGTCACGGT-------------------------AAGAGT----------AGATAAGAAATAAACCCACTGTGCAAAAGAGGACAAAGAAATTTCATGTTTTGATCTGCTGCTGGAGTGTGTGGGAACTCTCCCTCAAGATCTGGAGACCACAGTCAACTCTTACTTGGTTTTGTTGTGTGAGTTAATGCTGTGGCCATGCCTTGAGATGATGGGCAGAAGGCAAAGTATATCCTTTCTGGAGGAACAAAACTTTAACTGAGAGCT

a score=150068
s chr3           102730954 9433 + 160039680 [encoded data, 10591 characters]
s HiC_scaffold_1 112929670 9258 - 233722169 [encoded data, 10591 characters]

a score=25201
s chr3           102742597 1829 + 160039680 TTCCAATGTCATCCTCTCAACCTCCTTGAATATGAACACATAAGAATCAGTTAATATAATTTAATGTCTCCCCTCAGCCTATATAAAGCTCAATATAGTCGAGAT--ATGACATCCGTCACCAGGGTTCCTAAGATCAGTTTGTGCATGCAGAGGGCAAGACAAGAGGTGCAGGCCCAGCT-------CCAGGGAGGAAATCCAGAGACT-TAGAAAAGACAGCTTA-----------------CCCCTGGGTGAGAAAAGGCAGCCAGTGGGTGGTGGGTTTAACTCAAGGCTGCAGCTGGCTAGAGTTAGGCTTTCCTTCTGGGGCTCTGTGATCTTCACT-GATAAAGCCTTCTGTTCCCTG---GCATTAGCTGGAGGCCTGTGACTTTGTTTTGCTGGATAGGGAAAGCTGGGAAGCCATCTTCTTTCTCCAAATTCTTGCTCCTCCCTAATCTCCTCTTCCCCTGTACTTTCTACC-------------AGA---AGGCATTGTGTCCGTGCACTGAATAAACACG-CGCAGCCCACACTGTCCACAG---ATTTACTATGTTCTCAGCGCCCTCTTTTCCA--------CCCAGCTTCTTTCCCCACGTTCTTCTCTTGCCCTGAAACTCCAGCCCCCCCCCCCCCCGCTCCCCCAGCCCCAGCACTTGTAATCCACCTCCCAACAAGCTCAGCTGGCTCGCAGGACTTCACTTCAGAACAACTTCAACA-----------CACAGAAA--AAGGCGTGCTTGTCACAAATACACAGTCAAGTGTTCTTTCCAGA-GAACAAAACACTTCTCATCCTATCAAAGTTTGAATTGCAGCACGGAGAATAAACACTGAGTCACCATGAAGCAAgctcacagggtggctcagtgggcaaagaggcttgctactaagctccatcccagactcccacatgggggaagatgagagccagctctccccaccatatgcagtgcacacatgtgcccatacgtacacacatgcacacCAAGTAAATGAATGGGGGGGGGGGAGGATAAAAATATGCTCTCACCTGAAGGA-------AGCACAAACATCCTTATGAAG-------GAATAGAAGGCAAATCACA---CTGGCGAAGCAGAAG-----CCACAGCCACTTCCAAACAGCCTTATCAGCATCTGTTGTCACAGCAGTCCTTCCTCCTAGTCTC----CACCTGGTCCTAATACCAAGGACAGGGTAACTGGGTCCCTGTGAGGCCGTTTGGTATGAATGCCATATGCTATTCAGCCCTTGTAGTTTTTTCTGGTTAAAAAAACAATCCTTGCTCTTGACAAAGTTACCATCTGAATCCTGGCCTTGCTTTCTCTATGTAATGCAATGAAAGTCTTGGGAGCCGGTTTTCCACTTTGAGCAAATTAGTGTCATCTTCCAAAGCAAATGAGCTTGTGACATCTGCCTGCCACAAAGCTGAGGC-----------------ATAATGGGGCCTCAATCAGATCAGGAATCATGAGGGCTCATTATGAGTCCATCTAGGACGTGCGTTGCCACCGTGAGCAAGTATTAGCTCGAATGCATTTAACAGAGGCTCCAGAATAGAAGCCTCATTTTCAACTTTGTGTGGCTTCATCCCAAAATGGAGA--CTTGAAATGAGCTGGGTTTGTG-TGTGCACAGCCTTCGCTGTGGTGACGCAAGGACATAGGGCTGGTTTTGTTTG-TCTTTCACTGAAGGGCA------------------GCATGTCTATCTGAGTTGTTGTAGCCAT-CCGAAGTGTGACAACCTTGCCCAGGTAAAGGTGCA-GCAGATTTACTCTTTGTGACCATGGGTGGTTCTCGACACACATCCCTG-AGGCTTAGGAAAC-------CTGATAGCCCATGCAGGTGTGGTGCTTTCTTTTTCTGTGGGGTAGTG-TTTGCTGAGCACCTCCAACCTAGTTTCC
s HiC_scaffold_1 112942800 1657 - 233722169 TTCTAAAGTAGTACTCTCAGTCTCCTTGAAGAATATCATATAAAGCTGAGATAA-ACAGTTTAATA-----CCTTTGCTTATATGAGGCTCGGTATAGATGAGATGGATGTCA-CAGTAGCCACTGTA------------TTGTGTGTTCAACGGTGAGCCTCAGATA---AGGCCCAGCTTGATGCTCTAAGGAGGAAGTTCAGAGACAATAGGGAAGACCATTTTTGATGCCTAGGGCTTCTCCCCTAAATGGCAGAAAGCAGACA-----------------------------------TATAGTTTAACGTACTTCTTGTA--TATTTGACCTTCACTTGATAAAGCCATCTGCTCACTGCAGTCATTAGCCAGTGGCTCATGG---TATTTTGCTGTGTAGAGAAAACCACAAAACCATCAGCTTTCTCCtaattctt---------ctgtctccacctctcctgttccttttatttacatttctcgTAAGATAGAAGCATTATGTACAACCACTAAATAAACACAACGTACTTTCCACTGTCCACAGgtaatttaaaaagcttttaat----taatttaaagagagCATCCCAGTTTATTTCCCTTCCCCCTCATCTTGCT---------------------------------------------------------TCTCAGCAAGATCAATTGATCTAGGCAAGTTAACTGTCTA-CAACCTCAACAAcagtattattcactgtagttgAGGTGTACTGTTATTGAGGTTGTTATACAGTGTCCTGG--AGATGAATAAAACTCTCTTGATTCCGTCAAGGCTCTGATAGTAGCA----------------------------------------------------------------TCCTTCCA----TCATCACAGA-------------------------------------------GCATTGCAC---TGT------------------------------------------------------AAAATATACTCTTACCAAAAAAGTCTTTATAGCACGAGCTTAACTTTGAAAATTCTATGAAGAAAACGGAAATACTATACCTTGAGGAGCTGCAGGGTGTTCCCAGATGAACATAGACATCCTACTCAAATTCACATGTGGCCGTGTCCCTGCCTCCCAGTTCCAGCTCACCTGGTTCTTATGTCCAAGCCAGGGCA---GGGCCCCTGGGGGGCCATTTG-TATGAATGTCATATGGCGTTCAGTTCGTGTG--TTTTTCTG-------ACAAAATTCTTGATTTTGAGAAAAT-GCCATCTGAGTCTTGGCCTTGCTTTCACTGCATAATAGGATAGTAGTCTTGGGAGCGAGTTTGCCACTCTGAGAAAGTGAGTGTCACCTTCAAAAGCAAATATACTTCTGATGTCT--TTGCTAAAAGACTGAGACTGCATTACCCTCCTTGTATAATGGG-TTTCAATCAGATCCAGCTTTGTGAGTGCTTGTTATGGTTACAACTAGGATGAGAATTGCTACCAGGAACAGGTATTAGCTTGAAAGCACTTAATGAAAGCTGTAGGGTTGAAGCACCATTTCCAACTTTGTGTGACTCCAACCCAAAGAAGAGGGCCTAACAAAGGAATTGACTTGTGTTACACGTGACATTCACCCTGGAGA-AAAAGAACATAGGATTGATTTTACCTATTCTTTCATCCAAGTatgaaatatatgtgtgtgtgtgtgtgtgtgtgtgtgttgctataATCATATAAAAGATTCATATGCCTGGCTAGTAAAATGTATGCACATATTTATGCTTTGTGTCTGTACACTACATTCCACACACATCCCTGCAGACTTAACAAAATGCAGAGCTGATACTATatgctctatttttgttttcatttactgtGGGCAGATGCTTTGCTGAGTATATTCAACATTGTGTTC

a score=101618
s chr3           102744506 5947 + 160039680 [encoded data, 6424 characters]
s HiC_scaffold_1 112944940 5710 - 233722169 [encoded data, 6424 characters]

a score=34435
s chr3           102751720 1346 + 160039680 tgttctgtgTATTTTTCTTTAGAATGTGTTTCTGAGTCATCAGCTCAT--ACCCATTGCC----CTTCGGTTAAAGATGTCCTAAACAGGCTTAGCATGCTCAAGTGGTTCTTCAAGACACCAAGCCACAGCCAAGTGCAATGGTACCTGCCCGTGGCCCCAGCTTCTTGGGAATCA-----AGGAGGATCGCAGGC-----------------------------------------------------------------------------AAGGGAAGAAGAGAGGGGGAGCCATCCACTCAGCCTAGAGCGAGGAAGCCTC----CAGAAAGACACA-----GAGCATAGCTCTGGGGAGGCAGCAGGCAGGCTTT--TGGGG--ATTGACCCATGTTTGCAAAGATGCTCTCCCTTTTCGAATTCTT----CTTTTCCCTCCATGATAATGGAGTTTCTCTCTGTCTCAATGCTCTGTACCAAGTGTCCAAGGCAGAC-------------AGAGTGGTAGGCATTAG-CCAAAGCAGGGAGACACGAATGCGGGGAAATGAGGACATGGA-AGGAGGTAGTCAGACCAACTGCTGCCTGCTGCCTCCATTTGTGTCCCTCTGGGTCAAGGCCAAGGCCTAGCAGCTGACCCAGGGTCTCTGTGTCCCTTGGTTGCCTAGGTGAGGAAGGAAGAGGCTGGCAAGAGCGGGGCTGGCAGGGAGAAAACCTGGGTTACTTGGAGTTTCCTAGACCTTCTCCGTTCCAGTTTCTCTCAGGGAACTC-----AAGCCCCTGCTCCTTCCTAATTCCAACAACCTGCCCCTCTGATTACCTGTCCTGGCCCCTCCCCATG-----TTTTGGAAGGGTGAATGCCTCGGGGTC----TTCCAGGATCATAGAGTGGGGAATGGTCCTCTCTGCCTCAGGAA-------------GCTGGAGCACATGAGCTCATGTCTGTGAGCCGAGGATGTGAGCAGGTTTCTCCACTGGGGG--TGCCCACACAAACAGGAGCCACTTGGCTCTGCA--GTCCCAGCCTGGCTACATCTGCCTTTCCCTCTTCGATTCAGAGTCCCGGAGTCTGACTTTGATTGTGGCTGA-GGTTGTGTGGAAGGAAAGTGTTCCGTTGCTAACCATTCAGGGGCTGGCTTGCCTTTATAAACACTCTGACTCACTCTGGTAATATTTTTTTAACTTC-------------ATATCTGAT-ACCATGCTAGCTGGATAACAGAGA-----------CTACCATGTCTGGACAGTTTCTCCAAAGCCATTCTACAAGAATCAGAATAGGTAATTATGCCAGAATTGCAGATCACAACCCTGAAGGAGAGAGGGGACTTAACCATACCCAGTCTCAGCAGCCCAGAGCTCTGGACCCTAGCCTGTTCTTTTATGGGAAACACCCAGGAAGC----------------AGCAATTTT------AGAAATCTCAGGAACTCTTCTACCATTTATACAT-GGCAGATTTCTAGGTAAGAAA--CTCACT
s HiC_scaffold_1 112954299 1496 - 233722169 TGATCTGTGTGCCCTT-TCCAGAACATGTTCCAGAGCCATCAACTCATTAACCTCGTGTCATCTCTTTGTTAAAGAATCTCCTCAACAGGTTTGGCACATTCAAGTGATACTGAAATCAGTAAGACTTCAGCTTGGTACTGTAGCATCTG----TAGTTTCAGCTATTTAGGAGGCAGACACAGGAAGATCACTAGCTCAAggccacctgggcaacttagcaagaccgccatctcaaactaaaatcaaaaaagaaagggagggggtgtaagagaaagagaaaaggaaaaagggaagaaaaaagcaaagagaaagcaaagaggCCTCTCTGCCAAGAGTCCTATTTCTGAGAGATACTCTGGGTAGATGACCACCAAACTTTGTTGAAGTAATTGTACCATCTTTAAGAGAATACTTTCCTTTCTGACATGCTTGGTTCTCTCTTCTCTGTGATAA---AGCTTCACTTC-----------CTATGGTAAAGGACCAGGGACGACTTCTAAGCTTGTAGAAGCAGTAAATCCTAGGCCAGGGCAGGAGGACCCAGCTTTGGG-AAATGAAGACAACCATAGAAGTCAGTCAGACTGACCGTT-CCTACTGCATACTCCCTTGGGCCTCTGGGTTCAGGCCAAAGCCTAGAGGCTGATCCGAGGACTCTGTGTCCCCGAGTTGCTGAGGTGGGGAAGGGAAAATCTGACAAGAGTGGAgctggcagaaagaaggcctagGTTAC-TGGGGTTTCCTAGAC---CTCCACTTTAGTCTCTTGGAGAAAGCTTGAGAGAAGCCCGCACATCATCTAAATTCCGATGACCTGTCCATTCGACTTCCTGTGAAAGTCTGTCTCTGGGCTGGCTTTTGGA-----TCCTGCCT--GGGTCTTCTTTCTAGGCACGCAGAGTGGGGAGCCATCCCCTCAGCCTTCGCGAGGCTGGAGACTGTGCTGGAGAGCATGAGGTCATGTCTGCGAGCAGAGGATGTGAGCAGGTTTCTCCGTGGAGGGGTTGCCCACACAAACAGGAGCCACTTGGCTCTCCAGGGTCCCAGCCTGGCTGCAGCTGGCTCTCCCCATGAAATTCAGAGACCCAGAGCCTGGCCTGGGTTGTGGCTGGCGGCTAGGTATAAGAAAAGTATTCCAGTGTTGAACATTAAGAAGCtggcttgttttttaaaaaa--ctgattca-TCTGGTAATA-TTCTTTAACTTCTTGGTTTTCAGTTGTACCTGACAACCATGGTAGCTGGATTACAGAGAGGTACTTTGTCTTGCAGTGTTAAGACAATCTCTCCAAAGCT-TTGTATAAGA------------AATTGGTTCCATATTGCAGATAGCAAcactgaagaatgaaaaaaatttcatatagCTGAGGTTGGCAAGCCTTGATTTCTGGCTCCTATCCCTGCATTTTGAGGAAGA---CCGGGAATCAACTGTAGGTACCTCAAgcacttttctcaaaaaaaagctgaagaactttCCTTCCATTCAAAAATAAGCAGATTTTCAGCTAAGAGAGTCTCACT

a score=61900
s chr3           102755181 2891 + 160039680 TGCCTGGAGTGTAGTATATAATAGATGAGAATTTAGGGAGCTGGTCCATAGGCTGTGACCCCAACTCTTTCTTCACACTGGATCCAACAGCAGTTGTAGTAGTAGTGACCGGAGGCAATGACAT-TGTAATCAAGAAGTCAGTGTGTTAACATGGCTCTCCCTTGAGACGTTATGGAAAAGTGCTGATAGGATGTTGTTATTGCTGCTGCCTCTATTGCTACTACCACCCCTTATTCAACTACCTCTGTAAGGAGTATAGGGTGGGAATCAGGACTCTTG------------------CCTCTGACCTCG---TGTAAAATCGCAGGGAtgtcctctttacccaaccaggctgctttgaggaaccaaggagatgatagaaacgaaagagctttgaaaactgACAACATTGGA--CAAGATGGTGTTCAGGCAGTGGAGCCAACAACACTGTTGTAGTTAA-ATGGTATCAGTTCTCTTGTAACCACATCCATTCCCCATGAAATGATCCTCTTAGAGAAAGGGATTGATGGAGCTGAAATGGCAGGAAATGTGGGG-TCCCTCCAGACTGCACAGCCAACCCTTCCCCACTTAGGAACCCACAGGTAGCTTGAGGCCCTTTTGGTCTGGGCTGACTGGACTGAATGGTGCAGGAAGCAGTGTTGA-TAGCTTGCAGCCCCATCTAGGTCTGTTCACAGATAGACCTGCCCACAAACCAGCTGTGAGCAACCCAGAGGAGCCCCCAGGAAGTGCCTGAATGCCAGAGTCAGGGGTTCCCCACAGGGGTGGGACCCAAGTGCCCCACCACCACCACTTCCGGGTGAATAAAAATGGTTTCTGGGTGACTCATCTGACTAAAATGCAAAAGGAAAAAAAAAAAAAAAACAGAGACCATTAGCCTTACTCCCAGTGAGTCAAGTGCCAGGCCCAACCCTAGCATTGTGCTAACCTCTTATCTCAGGATGGGAGAAGGAAATCAGG--AGGCCTGGCCCAGGCCTC-------CCAGAT------TGCCATCATTCCTCTGTGAGGAAAATCCTCCTGGGGCTTGACTTAGG----AAGTGAGAGCTCCAAAACCTAAAGTAAGGCTCTTGCTGTTGCTTAGGGGGCAGAACAGCTTCTTGGGGGGAGCAGCAACTt--------------------gtggccttgggacaataacttgattctctggggc-ccagtgcctctgtctacaaaa-gaaggtaacagtg-tggttcagtacttcacag--CTATCTTGAGAGCTGCTCCAATAAACCTGCCCTTGGTGACTGTAACAGCGCCTGACAGGACCAGCCTGTCCCACACGTAGCAATTGTAT-----TAAAATTCT------CACAA-GGATAGCTAACTCCTGGTTCA-------------AACATGTTACTGCTGATGATATTGTGGGTGTCTA-TTACCTTATT--GTTCTCCCCCGTGG--------GTTGTTGAT----------------TTTGATTTTTGTTTTGTAACATGCCCTCCTGTGTGTCCAATATCTGTGGCACTGCCCTCAAAAGGAGGAAAAAATTCACAC-CAAACTGATGATAGTGTGTCCTATGCTCCTGTCCTTACCCACA---TCCTGGCTCTGTCCCCTCCCCTCCACTCCCTCCCCTGTTACCCAGCAGCCACTCTTGCCTCCCACACCCTTGGGTTCAAGTCCTTCAGTGGTGGGGATAACCCTTAGGTCCAGAGGACAACGGGTTCTGGGGCTCAAGA-AAAGGCTTGGGCTTGTGTCCCAGCTGTGAGGCCAGCTTCTGATTATC-CTGGATGCAGTATCATTGGCTATGTGGGGATGGTAGTGCTTCCTCTGCACAAAGGTGCACAGCCCAGGATGAAGTGTTTGGACTTGAGGAGGCAGGTGGCAGCCATTCATTGCAACAGCTCTGAGCAGCAGGTAGAGGCGGCctcttccc--ctcactgac--tgtgttctcagacaggttgcctggcttccttcaggttcagtttcctgatatgtCTACTGTTATGAAAGTAGA-----------TAGGATTACTTTGCTGGGT----GAGCGGGTATGTATGAAGTGT---------AGACAATAAGTGTCACCAGTATGGG--TGGCAGCAGAGTGTTCTACAGAGATGAA-AGCCAGAGCCTAGCTG-GTGTGGGCTGCTGC-----------------ACGGGGCTTGGTTGCCCTGTCTTCAGTCAGGCTCTGAATGCTCTCCCTGGCCTCTCATCCACAGGGCTGTATGTGCTGGTTGGTGCTGGGGCCCTGATGATGACTGTGGGTTTCTTCGGGTGCTGTGGAGCCATGCGTGAGTCACAGTGTGTGCTCGGATCAGTAAGTAGGGTTTACAGGGTGGGCACGGGGT-------GGATTGGCAGACTTCCCTGGAAGGAGCCAGGAGACCCAGCT-------------CCTCTAGGACATA----AAGccttggcactggatcct----ctctggtgtctgttttctccatctcctgcatgagaataatattatctttgttcctgcctcgtatggaaaatgt-gaaaacaatgaggtcatcagaggaaagacatttg---gggaagagtgcttCAGAAT------------TGATTGTTCCTTAAGAAATAATATTTCACTGTGGATGGGGCAGCTTAAAGATCCTCACAGCCAGGAAAGAACTGTTATCTACAAGGAAAGCATTTCTGGTTAAGATCAATGACTTAGCCAAACATCCCTCTGGTGCCTTATTTTAACCCCC--AGCTTCTGTTTGAAAATGCAACAACAAAAGCAGTCTCTGCTACCTGCTGCTCGGATGATGC--------TCT-----AAACACTCAAGGAGGTGAGGGGC-ATCAGAGA-GATGGCTCTGGACTTCTCACAGGGGGC-CTGAAGCAGGGTGTTCTG------ACCCTCTCATTTCCCATT-CCCA--GCAGTCTTTGGGTTCTCCGTGTCTGTCTGATGCTTCTCATCTATGGCTGTGTGAAATGT-----CTGTTTC-----CTCTCCCAGATGTTCTTTCTTTCT--CTAAATAAAGCTGAAAAAGCTGTCTTGTGTACCACAGAGCTGAGTTTG
s HiC_scaffold_1 112957892 2962 - 233722169 TGGCTGGAGTGTGG-----GATGGATGAGGACTCAGAGGACTGGTTCTTAAGCTGT-------------------CATTGTATCACACAGCAGTTG--------------GGAGGCAGTGAACTACATAGACAGGAAATCAGTATACAATGATGGTCCACCCCTGGGACATGCTTGAAAAGAACTGAATACATGCTG-----------------GTTGCTGTTGCTGCCCTTCATTCAG--ACCATTACTATGAGTACAGAGTGAGAATCCGGACTCCAGGCTGCCAGCCATCTTACCTCTCTGACCCCTATTTGGTAAAC-----AAATGCCTGCT------AACTGGGTTGTTTGGAGCAACCCATGAAATAATAGAAGTACAAGAGTTCTGAAAACC-ATATTATTAAAAACAGTAAGGTACTCAGGCAGGGAAGCCaacattactattatttttaatatgacaCTGTTTTTCTTGTTGCCACATCCATTCCCCATGAGCT--TCCGCTTTGGAGAAGAGGT------------AGTGGGAGGAAGTGTGCACCTCCCTTGGAACTGCAGAGCTGCCACCTCCTC-----TGGGCTGAGCAGAGCCTTGAGGC-----TGGC--GGGC--GCTGGGTGGGGCAGCAGAGGAAACAGAGCAGCCTTACCTCCAGCTCCATCTATGTCTGTGAGCTGAGAGGCGTGCCCGCAAACCA-CTGTGGGCCA-----AAGAGTCT--AGGAAGCCCCTGAACGCCTGGCTCAGGAGTTCCCCGAAGAGGCAGAACACCAGCCCTCCACCTCC----------TGCGAGCAGGAGTAGTTTCCAGGTGACTCATCtgagtaaaatgtaaaa-----------aaaaagaaagagactatTAGCTTTTC-ACAAGTAAGCCAAGTGCCAGGTCTCAT------ATTGTGTTC-CACCTTATCTCGGGATCAGAGGAGGAAATCAGGGAAGGCCTGGCT--GGACTCTAGAAAGCCAGATcatttctgccctttttattcTCAGTGAGAAATGTTCCGGGG--TTGATTTAGGTAGGAAGTGAAGTCACCAG---CTGAATTAAGACT---GCTGTTGCTAGAGAGGCAGGGTG--CTGTGATGGCAAGGAGCCACTTCTATCAAATACaccagctctgtgaccttggacaaaCTGCTTAACTTTTGGGAGCACTCCTTCCTCTGTGAAAAGAATGGAGGTAATAATAATAGTACA-TACTCCATAGGGCTTCCATGAAAGTTACATTAATAAACCTACTCTATATGGACAGAACAGTGCCTGAAAATA--ATGCAGCTTCATACATGTCCCTTCTCTGCTCCTGAGATTAGGTGAAACACAATGGAGACCTGGCACTTGGCTTACTTGTGATAAGCTAATATTTCATTCTTAACAACATTGCTCATCACTGGTTAGCTTAGTTGGTTAGAGCCCGGAGCTGATAATATTGTTGATGAGTATTACTACCCTCCTTAGCTGTTTTCTTACAACACAGCTTCCGATGGATACAGTGTCTATGCTGTTACCCTCTGAAGG-GGAAAGGACACACAAGCAATGTCTTACTGCCATGTCCTCTGGTCCTGTCTTTCACCAAAAGCCCCAAGTCTCACCTTCTCCCAGAAGCTTCCTGTTCTGTGCCTGGGAAGCTTCTC---CCTCCCAGACACTTGGCCTCAGGCCTGTCATAGATGGAGATGGATC--AAGTCCAGAGCACAAGAGGCCTTGAGGCTCAGaagaaagccctgggtttgagtcTCACCTCTAGCATCAGCTCTTGACCACCTCTGTACTCTGTGTCATCATTCATG--AAGATGATAGTACTTCCCC-ATGCAAAGGtgtagaaactgaggcacagtgcctggcccaTAGGAGGTAG-TGGTGACAGTTCAGTGTACTAGCTCTGGACGACCAGCAGACGTA---TCTTCCCTGCTTGCTGGCCATGTGTCTTCAAGCAATATACTTCTTCTCCTTAAGTTTCTGATCCCTT-TCTGTATACATTG--GGGATTAGAAGCCCCTCCCTTGAAATCATTACATAGGTTTCAAGAACTACTCTTCGTGAAGTGTTCAGCAAACATTCAGTAAGTGTTTCCCTCACAAGACTGACAGCCAGATGTTCTGCAGTGTCCAGGATCTAGAGCCCAGTCATGTGTGGGAGACAGTGCTCTGACCCTGGGGAGACAGAAAGTAGCTGCTTTGC--TCAGTGAGACCCTGAATG-TCTTCCCAACTTCTTGCCCACAGGACTCTATGTGCTGGTTGGAGCTGGAGCCCTAATGATGGCCGTGGGGTTCTTTGGGTGCTGCGGAGCCATGCGGGAGTCACAGTGTGTGCTCGGATCAGTAAGTAGGG--CACTGGGAGTGCAGTGGGTTGGGGAGAGGGTGAAGAACTAGCTTGAAGGGACTTGGGATGCCTAGCTTGCAGCACCAAACCCTCCAGGATTCACTAGAACCCAGGACACCCCCTCCTTCACCCCAAGTCTCAGGTTTCTCCATCTCTTGCATAAGAATAATATTATCTTAGTCCCTGCCTCATGTGGAAAGTGTGGGGGAAAATGAGGTCATTAGGGTAAAGATGTTTGGAAGGGAAAAGTGCCTAGCAATTGTAAGAGATTAtgattattctttcaaaaatgataTTTCCCTATGGGTGAGGTAGCTAAATGACTCCTACTGCCAGAGAGGAGCCATTGTCTACAAGAAAAACA-TTCAGGTTAAGATCAGTAACTTGACCAAATATACCTCTGGTGGCTTATTTTTACCTCTAAagcatctgtttaaaaa------aaatcaaatgatttcGGTTTACTGCCATCCAGCCAATGTCAATGGAGCCTaggagaaacaaacagaaagaacagGGATGGGAAGAGATAATGTTTCTGTATTTCTCCTTGAGTACTTTGAAATAGCAT-TTCTATGAGACAGCCTCTCATTTCTCATTACTCATTGCAGTCTTTGGACTTTTTGACTCTG--TGCTGCTTCTATTCACTTGCTATGTATGACACAGAAGTTGTTTCAGTATCTATTC---ATTGTCTTTCTcccctgctaagcatctct-------ctATCTTGTTTATGACCAAACTTAGTTTG

a score=40266
s chr3           102758090 1607 + 160039680 GGTGCAAATGGGCTAAATAAATTGAAAGGGTACTAAATTAATGACAGTAGTGTTTTCTCTCCA---CAGTTTTTTACCTGTCTGTTGGTGATATTTGCTGCTGAAGTAACCACTGGAGTATTTGCATTTATAGGCAAGGATGTAGTAAGTAAAACCTAGAAGTTTTTGTGGTTATTAAGGCAGCTTTCTTATGGCAAATGATAT-AGAATACCCATCCCAAAATGTTA---AGAAACAAAATAACCCCC-CAAGTTATG---TAAGTGGAACCTTGAACCT---GGTAGTGTACAGAGCTCATA-------------------------ACGTATAT-----------------------------------TAGCAGTTTCT--------------------------------AGTTCATG-------------------------TATAAACTAGTCTATGTTTGTTTGTTT------AGGATTTCCAGTTTAAGATTGTTCCTAGTTCAAAATGAGGCAGGCACTAGGTTACAGACAAAAGAATGGGGCAAAGAAGAAGGAAAAAGAACCCACCTTCTCATCCTTGGCCTAGGC--------------AGGGCCTGCCCTGTTATGAGAAGCTAAATCCTGGACTGCTGCATGCACGTAG--------------------CAGTCCTCAGAACCCAGAAGAGGTCATGAGGAGAGTCCACAGGGCGTTGAGACCTTTTGGAAGGATAAG----------------------AAGGTTGGGGGGCAGAGCCTTGAGAGGGTCATATTTCCAGTGAACTCATGTGCTGTCTATACTGGGTGTGTGAGCTTAAGTGTAAAACTGATAAGCATGAAAACTGAGTGA---CTGCACTCTATGGGACATTCTTAACACAGCTCCTTGTACCCAGAGGTTACAAGTCTCAGGTTAGCTCCACATAGAGCTCAAGC------------------------CTGTGGATTTAGGGGTCATATGTCTTTGCA---CTGGAAAAAGCATCCACTAAGCCGTGTGGGACATCTAAATGCAGAACATCTTCCTTGACAGTAGACA----------CATGCCT----GCGAGTTGG-----------CAGGGAACCGTGTGGTCATGGAG---TCCACCTCATGTGGCTCACCAGGATCTCCTA----------------CATGGGCCTAGTTGACAGTGAAGCCCT------CCTACAAATAACCACTCCAAAAGGTGGCTCTAATGT---TATAAAACATTCTTGGTCAGTTTATCCTTCCATTTTCAGAAGCATCTCAGGACCTCTTGAATTTGTGTTTTGCTCTATATGTGCAGAGGCCTTTTAAAATACAGAGGAGTGTGCGGGGAATCAGCGTTGCCAAAGGACACAGAGGAGGGGAGTTTCTTTGT--AAGATGAAAATGTCTGCAACTTCCCACTCACCGTGCCCT----------GGTGTTTTTCCAGGCTATACGACATGTACAGAGCATGTATGAGGAGGCCTACAGCGACTACCTTAAAGACAGGGCAAGAGGAAATGGAACTCTCATTACCTTCCACTCAGCAGTGAGTAACTT--CTTCT--CTGGCATCACATTTTCTATTGGCTATGCATGAGCCAGGCTCTCTAATCACCTACattaaaataaaaataaataaaataaatGGAAACAGTAGCCTTTGATTTTAACTCTGATGAGAGCCATAGTTTGTGCTTTGTGTAGACCTTTGGCTAGAAAGAGGCCTTCTACAGATT---------------------------CACAAGAGACCAAAAAGCATGAGC-AGGACACTGAGAAAGCCACCCAAATGTGTGTCCATTCTTCTCAGAGGTgacattgtgg-tgagacagaagcaagcatgg
s HiC_scaffold_1 112961236 1832 - 233722169 GGTTCAAAACAGGTAACTGAATTGAAAAGgtattaaattaatgaaattagtattttctgtctttttcagttttttacctGCCTACTGGTGATATTTGCTGCTGAAGTAACCACTGGAGTATTTGCTTTTATAGGCAAGAGTGTGGTAAGTAAAA----------------ATTACTG------------TATCACAAAAGATACGAGAATATTGA-CTCATAATGttattaagaaattaaatagCCTCTTCAAATTATAGTATAAGCAGAATTTTTAACCTAAAGGTAGTATACAGAATGCACATTTGTACGCATTTgagtgtgtgtaaatatatatgtagatattttCCTAGGAAAATATCTACATATTCCTAGGAATTTCCTACAAATTCCTAGGATATTTTCCTAGGAAACAAGTTCACAAAGTTGACTTTATAAGTCATAGACTTATAAAGAGgtctatggttttttttttttttaaagtatctctAATTTAAGATTATCCACAGTTCAAAGTGAGGTAAGAA------TACAGACATAAAAAGGGGG--------GATGGGAAAGAACATACATTATCATTTCTT-CTCAGGCTGTCATTTGTCCATAAGGCTTAGCCTC-----AGAGACAAAGCCCTGGCCTGCTGTGTCCTAGTGAAGACAGTTTAGCTTGCTGTCCAATCCTTGGCATTCAAAATAGGTCATCAGG-GAACCCACAGAA-GAAGTGATCTTTTAGGAGAACAATCACACAAAGGAATGGAAAGGACAAGGAAAAAGAATGGAACCTTAAGTGTTCTATATTTCAGATTAATTTGTGTATCATCAGTGTTATGTGTTTGAACTTG---------TTAAAATATGTGTAAAATAAGTAAATGCTGcttcctttgaaatttttctaaagTGGCTGGTTATAGTCATAGGTTA---GTTTAAATTCAGCTCCATATAAAAGTGAAACTAGATTTTAGGACCATCTGAATTTCTGTGGATTT-GGATTCATACACCTTTGTAATACTAGAGAAAGCATCCTCTAAGCTTCCTGTGGTATTTAAATTCAGAAAGTCATCCTTGGTAATGAACAACTTTTGAACCATGTCATGAAGAGACTTGAATTCTTTTAACTAGTGAA-----TGGCTATGAAAGGTTCCAACCCTGGCTATGCATCAGAATCCCCTGGCTGAAGCCCAGAAATCTGGGGTCCAGTTGATGCTGAAATAGTATTGGGTTTGGAAACCTCCATTGTCTAAGAGGTCTATCTTGTCCATGAAAAGTATTCTTGGTTAGTCTATCCTTTCATCATCAAAAGCATCTTGGAAACTCTAGGATCTATATTCTGCTTCATACATTCAGAATCATCTTAAAATACAGATGGTTACATGGAAAGGCA----TATGAAAGG-TATGGAAGAAAGGACTTTCTGTGTTTGAAAAGAGAACATTTAAAACTCCCCACTCGCCGTGCTCTCACTTTCCTTGGTATATTTTCAGGCTATACGACATGTACAGACCATGTATGAAGAGGCTTATAATGATTACTTTAAGGACCGGGAAAGGGGAAATGGCACTCTCATTACCTTCCACTCAGCAGTGAGTAACTTTACTTCTTGCTGAAATTTCATCTTCTAAAGCTTATGCATGa---aggat---------------tcaaaataaaaataagttcagTAAAGGCAAGCAGCAGCCTCTTATTTTAGCCATTGTGAGAGCCACAGTTTTTG-TCAATATAAAACCCTAGACA-AAAAAGGGCTACCACAGAGTTGATAAGAGGAAGTCAGGGGGTGTGCCCACAAAAGACAAAAGAGCATGTACAAGAACATAAAGAAAGCAGCCCAGATA-GTGTCAGGTTCCCTCTG-GGTGCCACTGTGGATCTGATAGAAACAAGCAAGG

a score=31797
s chr3           102760247 1330 + 160039680 GCTTATAGAGGAAATGAGCCAGACCAAGGTCG-------TTCTGTTTTCTTAAGCACTGCATTTTGGAGAAGTCACTTTGAACTTCTGGGCCACATGTTTCCCGGTACCTGG---CTCTATATGACAAGAGTGTCTTAGAAGGTTCCCCAGAGAGGGCAAGCAGCACAAAGATCCCTTTGTCCTAAGCAGCCAGCCCTGAGGCAGGGTGCCTATTTGTCAGCCAGCAGTCATGCCTGCTCTTCTGGCCTTGGCTTTCCCATGGCTCCCATCCTCTCATCTCAGATAGTCC--CTGGCTAATGAGCCCTTCCCAAAACTCATAAAGCTTTTGCTCGTCAGCAGGTT-TCTGGACTTC-AGTGTGATAGAGCTGGCATGGGAGGTCCTGCTCCTACCTCCCAGCTCTTCATGGTGGGCACCATCAGTTAGCTCCTTGCCCTACCC----TGCCCCAAGTCACTTCATAGCATAAAACTGTTGCAGCTTTGGAGAAGTCGTGTTTCTGGGTTGCTAGCACAATCCTGTGATTCTTCCTTTGCTCTCCAGAAATAGCAGTTTGGG--------------CCTCAGAGCTGCTCTGCGGCTTTGGCACTGCCAGC---CAGCAATGACACAGAGCCCTGGGGCTAGCACTCCTGCCTCCTGTGTCCTAAAACCTCTTCTT---GCTCTCTAGTTTCAGTGCTGTGGAAAAGAAAGCTCTGAGCAAGTCCAGCCCACGTGTCCAAAGGAGCTCCCAGGCCACAAGGTAAGCTGTTTGTTCCAGGGTCCCTTCCCCAGCCCCTACCTGACGGA--GGTTTTTGAATGTTAGTAGAGGCAGGGAGGCTCAGGCCTTCTTCCCAGGGATTCTAGGAGGTCCCACCGCTTCCCAGTGGACCCTGAGCCTTAC-CCATGCCATACGAAATAAACA--GCAACTCTGG--CAGGTTCCTCATACTCTGGG----AATGATGGG-TCACCTGCCAGTGACTATGCCATGTGCTGAAGGTATATGAA-GTGAGTTCACCAGGACAAGAGTTCTGTGTT---------------CTTCACATCTTTCTGGGACAG-CACAGCACTGATAAA--TTTAACTC-----------TGTC--GGGGATTCTATA---------AGTGAAAGAGACAAGAGAGTCCCTCCC---------------------TCAGTGGCTTCATAGCTGGTAATATGCAAAAAGTCTGTCCAGGGAAACACGGAGATACAGCAGAATTAGGAAAGCTT--GTGTGGAAG--------GATATGAGTCCTTGACAAAGGGAGGTCA----------AGAAGGCAGCCGGGAGAAGGTCAT--------------------GCTGTGGGAGAACAG-GAACCCAGAGGAACTAACGT------TTCTGGGAAAGACAAG-------------------CTGGAGGTTTGAGAAAGCCATCACTCTCAGCAGACTGAGAAGCAATATGGCGTTTGCCTTG
s HiC_scaffold_1 112963094 1457 - 233722169 GTTTACCAAACAGATGGGCCAGGCCAGAGttgctctgttttctgttttcttaaatattatgATATGGAGAAGTAGCTGTGAGCTCCTGGGCCAAGTATTTTCAGGTAACCAGTTTCTCTGTGTCATAAAAATATCTTGGAAAGTGTCCCAGAAACAAAAAGCAGCACACAGATTCCTTTGTCTCAAAGGGCCAACAATGGAGCAAGACACCTGTTTGCTAGTCAG-------------TCCTCCAGCATGGACATTTACTGTGATCATTTCTCTCTTTCCCAGACAGTACTACCGG-TAATAAGGCCTTTCCAAAGGTCATAAAACTTTAGCTCCTCAGTAAGTTGTATGGTCTCCCAGTCTAAAAGAA-GGACTCTAAAGGCCCAACTCTTTTCTAAAAATCAGTTTGAACAGACACTGTCAATTAGTTTCTTGTCTTGTTTAGGTTGAATTGAGTCACTTCCTGTCATAAA-CTCAGACAGCTTTAGGAAAGT----TTCTTGGTTTGCTAgcatgattatgtgattctttaCT--CTTTCCTGAAATAGCAGTTTGGGTTGCTTAGATCAGGCCTTGTATCTTCTTAGCTATCTTGGCACTGCCAGTGCTTAGCAGCAATGCCCAGACTTGTAGCCACTGCTTCCCTCTCCTGTGTCCTAAAGTCTCTTTTTCTGACTTTCTAGTTTCAGTGCTGTGGAAAAGAAAGTTCTGACCAGGTCCAACCTACGTGCCCAAAGGATCTTCTAGTTCACAAGGTAAGC---TTCTGCCAGGGTTCC-CACCCACTCCCTGTATTGTGAGATAGTCTTCGCCTTCAGGTGAAGGCAGAGAGCCTCAGAGACACCTTTGAGAGATTCTAGGAGACAC-------TCTCTATGGACTCTAAGCCTCACTTTATTCTGTGTCAAATAAGCAAGGCAATGCTGAGTCAATCTCTTGGTGCCCTGGGGAAAAATGGTATGCTAACTTGCTAGT-ATGATGCCACATGCT-------TATGCATTTAAATTCACCATGCTCAGAGATGTGTCCTCCAGGAACAAAGCCCCTACACATGTCTCTGAGgaagtcacagaaataataaatgtttcacTTACTAAATGTTGTGTCAAGTGGGCACTATGCCACCCCATGGCAAAAAAGACATG---GCCCCTTCCCACAGCAACCTTGAAGATTAATCAAGGGCTATAGAGCTG------TATGAGGCATCTGCACATGGTACCTGAGACACATAGAAGAATTAAGAAAGCTTCATAACGGAAGAGATCCTTGAGCTGAGT-TTTGACAAAGGGGGGTCACTCTGGGCTCATAAAGCAACAGGAACAGAGGCATGGGCTTTAAGAAACTCCAGGGCTACAGGAGAACAGAGAATCCATAGAGAGTAGAGTGCAACATTTTGGGAGAGGCGAGTAAAGGCATAATTTTAAACCTAGGGGCTTGAGGAAGCCATTGTTTTCAGCAGAAAATGAAACCTAATTAATTTTGCATTG

a score=29395
s chr3           102764471 1503 + 160039680 CACTGGGAAGCTAGTAATGGTTACAGACAGTCCCCTCTGCCTCCTGCCCAGCTTACCTCACCTTCCTACCCTTCCCCGCCTCCCCAATCCCTGAATGTTCTTCCAACCCCTGATTCACAGATTTCCTAAGGGT-CAAAGGTTGGAAC------CACAGCCCAGCTGACACTGGAGGAAATGCTCTTCTGACTCCCAAGACCTGGTTTTCCTA--AGGATTGGTTTTCCCTAATTTAATTTGACCCCATGCA-GACTTTTAGTCTCTTAATAAGTTATGCATACCTTACATAGTCAAATACATCAAGTGTATAAAATTCCTTTTAAATTGTAAATGACAAAGAGGAGGT-------TATAATTTAGAGAATATCGCATTTTATCTTTCTTTACTGAAAGTA-AGAAAAGGCTTAAGTTTTGGAATGCCGAGGGGGTCGGGGTGGGGGGGGGGAGTTGACTAGAAAGTTTTGTAGCACCATACTTCAGAGCTCTGAAGCAGACCTTTGGCCTAAATAGATAATCTTACCCAAAAAGAGAGACTTGTGTTTGCC-CGACACTGTGTTTCTGCTTCACAGCTGTCAGGCTGACGTTACCCATGAGGGATGGTTTGCACGTGAGCAGAAGCTTACACTCATTAACTT--ACAGACCCAGATAGCAAAGGGAAGGATTGGGTCATGGGA------TGTGTCACA----CAATCAGTTTTTATGGATGGCTTTTTTTTTTTTTCTAAACAGAATTGCATCGACAAAATTGAAACCGTAATCAGTGCTAAACTGCAGCTCATTGGAATTGTTGGTATTGGGATTGCGGGTCTCACGGTAAGAAAGTTCTAGAATGTCTTCTTTTTTTTTACCTTCTAAGAAGCAGTAAACCCTTACATAGTATTTCTCTTCCAATTGGAGATGGCTGTA--------------TCTCATAATGGGTAAAGACTTTTGTTCACAGTACATCTCCTAAGAACAAAGTTAATGACATACATCAGTAGTAACTATATAAAATATGA-CACAAATTCCAGTATCCACCCAATTATGACCTTGAATTTGTCACTGAAACAACTTCCCA-TGTAAGCCTGCCGCCATAACCTTGGTAAGTAATCTCAATTCACAGTAACAGAACAGCAAGTCTCTTCATCTG-AGCACTGgcaggctgcatagggcaagcactggtatcacacaaactggattcacctcctggctccactact-----------------------------------------ttcttataagccctggggttgaa----------------------------------------------------ggagagcgtctt------------aatttccc---ctaagct---------------------------tctatagttgtagaatat--------------------------aaattttaaacataccagccttacaggattatgaaggtcaagtgggatactgcctataaCCTATTGTTACAAATTAATTGGCATAAAATCTGAATGTGTTGCATTTAATAAGTACCATCTTTCTCTATACTTTTATTCTGGGCAAACCTGGAATTCAAGCAAAGGGAGTTATCACCTGTAAAGGAGAGAAGCATGCTCTAGCA-TCAGCCGTTGGTGGCTCAGTCCTTTAACAGCACAAAAG-AAGAGAGTATGGGA
s HiC_scaffold_1 112971178 1604 - 233722169 CACGGGTGAAGCATTAAGGGTTACAAGTGACCTAATCTGCTCCCTATCCAGTTT--------------------------TTCCATATCTGTGAAGATCCTTTGAATAC-TGCTTTATGGTTCCCCTAGGGGAATAAGGACAGGGACTTACCACACAACACAGCCACTACAAGAGAGAATGATTCTTTAACTCCCAAGACCTGGGTTTATTATAAGGCATGGTTTTCCTTTGTTTAA-----ACCTGTACAAGGTTTTTAGTTACTTG-TAGGTAATATCTACTTTGCATAATAAATTTGAGTAAGTATACAGAAAGTCTTTTAAACTCTAAATAAAAAcgtgaaaacaaaaatgtgttatCCAAGGGCTATtgt-ccttatttttctttgctaaaaGTATAAAGaagtctcaaattttaaaatatc-------tcagaTCCTAGAGAAATAATTTCCT-----------TAGC--TAGATTTCAGGGTTTTTAAACCG-CAACTGGCCTAAATAGAAAATTCCCACCAAAAGGAAAGGATTACATTTTTCTCCAAACTACATT----------AGTTATCAGAATGATGTTACCTAAAAGTAA--------GCATGAACAGAGGCTGACATGGATTAACTTTCACAGGATTACATGTACCAAAGAAAGAACTGATCGGGagagaaaattgttttatatatacaatctgtttttat-------tcttttctttttccaaaacagaattgcattgatgaaattgaaaccaTAATCAGTGTTAAGCTTCAGCTTATTGGAATTGTTGGAATTGGAGTTGCAGGTCTCACGGTGAGAAAATCCCAGAA----CTTACCTTTTTTGCCTTCTAA-AAGCCTTGAACCTTTGCAC-TTGATTCTCTTGAAGT--GAGATAATAGTATTTTAAGAGATAATTTTCATAAAAGATAAGGACATTTGTTCATAGGATATCTTCTAagaacaaaattaattaaatacatCAATCTTAGTCCTCTAAAATAGGGTTACATATTTCAATGCTGACATAATTATGAACCTGAGTTTATCCTTGtaataacttttcattttaagGCACCAATCTTAATCTAGGTGAT---TTTCAATTCAAAATAACGTATCAGCCAATCTATG-ATCTGAAGAGGCAGCAAAGTATAGTGATTAAGCTGTGGCATCACATGATCTATATTCATTTTCAAACTCTGTTACTCAATTtgtctgtacctcagtttcctcattgtaAAATGGAGATTTTTGTGGCACCTGGTATTGAACCCAGGTCTCTTGTACCAAGCTACATATCCCTTTTTCTTacgttttattttgagacaaggtcttgctaagtcactaagttgcccaggctaaactgaaatttgcaatcctcttgctccAGTGCCCAGAGTAGTGGGATTTCAGGGATTCATCAATACACCTGGgtgaagtttttaaaatgccaaattaAGACTTATGTAAACATTAAATGGGCTACTGCATGTGTGTTATCA-TACAAGGTAATT--CAT------TGAAAATGTCAGGAGCAATAAATACCAGCTTGCTCTATACTTTGAGTGTTCCTAAACCT-AAATCCAGGTAATGAGAA-TAGCATAT-------AGGGAAGCATAGAGTACCAGGCACCTGTAGGTGGCTCAGTACTTCTaaagtacaaaagaaagagtGTATAGGA

a score=194466
s chr3           102766695 14007 + 160039680 [encoded data, 16208 characters]
s HiC_scaffold_1 112972945 14593 - 233722169 [encoded data, 16208 characters]

a score=49302
s chr3           102781551 2213 + 160039680 TTCCTTTTTTACTTCATTAT---AAATAATAGAATTTTGCCcacataaccttcctagccctcaatttcctcatctataaaaggaaagTTTAACATCAAAAGATTAGGAAAGTGTTCA--TAGCACAAATAACCTGAGTTCCGTG---------ACCATCAGACCCCTGCCCTAAGAATTAGCAATCTATAACTCTGATCTCAGATTCAATTGTGATTGTATCTAATTGATCAGGTCCATATCTTTGGGTCTTTAATTTGTGTATACTCTTTCCTAAAATCCTAAAAACAG---------TAAAGTAATCCTGTGAGTACTCCATAGGA------------------------------------------------------------------TTTCCTTGGCTATAATCCAGTGTTGAT------------GCAGCCCCTT---------------------------------------------------------------------------------------------------TCCCCACATT-------TTTCCTGG-----------GTTCTTTCCTTTACTTTTTTTCCCATAGTTTCTTTCT-------GCTCTTAATATTTTCGTTGTTAAACACATTTCTCTCTGCTCTGCTAATATCTATTACCTCTTTTTTTCTACTTGAATTAATTACTATACAATGAAAA-GAATAATTTTCTCCACCTTTGAACAACCCCAGCTCTTCACTGAAGCAGAATATTTTTCTAGAAAGAAAAAAATGCATTATATTAATAAGT-------------------------TATAGGTATTGGATACTATCCAAGAGAGTTTCACTATTAAATAATTAAAAATATCTTGTAACATGGAATGTCCCTGAAAGTACTTACAATGCTGGTACCCGTGCACATACTCAAAACTGAATTTACTCTAAAACACCCCTAAAATATATTTTCCTCAAAGATGCTCATTAGTAATCACATGGGTTAAGCACACAGGTTATTCAGGTGATAAGA-CATTTAAGTTGGAATGTAGGTAGGAGAAAGTCACGTA-ACTGTTCATCCCTCATCAGGAAATGGACGGGCTGCTTCTATCCTTTAAGTCAACGGAATCTCACCTCTCCACTCGTATGC-----GCTCACTCTTCTCCACCCACTACTGCAGGATCTGGAGCAATAATTAAAAACTTTAGAGCCCATCAGAGAAAATTCTATCTCTG-CATTTGCAATTTTTAAATAAATGCTACAATTGTTCAAACACAGTGAAATGGTAATAAAGGCACTTCATCTTACAGGTTCTGCACAGGGTAGACACCTACCTTACTTTGCATGAGTGAGTTACTGCTGTGATGACCCA--CTCTCCGTTCATTTTATACCCTTCAGGATAATTCCCCTCTGATCTTCTTGTTTATATAATTGCATTCGAATTGCTGCTTTCTTATCTGAAAAGCATCTATTGAAAATTCATACTGAACCCCAAATAAAACTTGTTTAGACAAACAGGTTCACTATATCCTCTCCCTGGAAACTCTGACATTATTATAGCATGCATCTTCCTCTCTTCTATT------TGAAACATATCTTTTATTAATATC---TGTAATGTTAATAACAGACATTAATATTTGCTCATATTTATAAAGGATAGGCCATTAAATTGGAAGAAGAA----------------GTGGAAAAAGTCCTGAGATGTCAAATTTATTTGGGG-CCTGAGTGTTCCA------GTCTGCCTGCTCATGTAGAGATTCGTACATATTCATC-TAT--AAAGCAAAGGAAACCTCTTTC-TGGAAATCTAGGCCAACTGAACCATGTATGACAATAAAAACATTTTAGTTCAAAATTTTTATTTGTTT-------TTTTTTCTTGAATTTTAGAGTATGTTAA-CATAACTTA---GTGTGAAATGTTTCTTTGAATGACATGGCTAAATCTGTCAggatgtcaaactgacctgagatcaaattctgtcttggcccttcactagtaacgtcagcactcgtgagtt-----ctgcttattttagttccctcacctatcaaaAggcatgctggtgggtgtctttattcctagaactcaggaagcagaggagtggagagtttgaggcctgaatgggctatatctgtctcagatatagcccaggtcctgtctcagagaaaAATGAAGATCACTGTTTATCTACAGTACCTGACACATAACAAGGACTCCATAAGAAACAATT---------GACAATAACACAAAAATATTTGATCAACATTT----------------------------AGCCAATATATTCATTAAATGAATAAATGGCTGGGGAAGTG--TAGATAATTACTCAAAATTTGGAACTAATATACACTTTTTCTTAGTCTTTATACCAAT------GTTTTACTCATTTAACCCACTTTTTACCACACTGTAACTAAA----CATGCCCAAAACTT-----GCTTTTCTAAATTGCTCTCAGAAAAAAAGTTCAAAccaa--gatacaatttgcaaa
s HiC_scaffold_1 112987776 2349 - 233722169 tttttcttttacctctttATTGGATATAGTAAAAGTTCACCCAC--------TCTGGGCCTCAaattcctcatctataaaaggaAGACTCAGAATTACAAGGTAATTATGTAGTTCACATAGCACAAATAG--TAGATTCTATGTGCTAAATTAGTGTTAGACCCCTGGTATGAAAATTAGCTATCTAGAATT--GTTTCCATATTTAAATACAATTATATGTCAATGAagaattcaatattttttgccttcatttttccatatactccttcctaaaattataaaaagaaaaccatacaTGAAGCATTCA---GGGTActacataagaaaaaatatagaactaTATAACACTATATGACTCATTAATTAGTACCTTCCCATATATCTGTCACAATTTCTT---CTGTCACCCTGTTTTCATCTCTGCAATTTAACTGCCCCTTCTAAAATCATAATTTGCTGATCACTTAAAGACAAGTCACAACTTCCGACAGAACTCAAATAATGATAGCCTTCCTTCTTCAGCACCATGACTAAATATGTCcccactttcaatttttttccttattccaaAATACGTTCTTTCCTTTATCCCTTTCTCTaccctttttctcttgtttttgct-ttaattttattcttaatgAACACATTTCTTTCTACTCTGTTAATTTCCTTTATCAATCTATTCTCAC--AAATTCATTACCATGctacaaaaaagaatgaatttcctACCCTATGAACAGTCTC------TTATTAAAGCAATATATTTTTCCAGACAAAAAA--------TATACtattaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattggatACTATTCAAGGTGGTTACACTATTAAATAAccaaaaaaattttgaaacacagaGTGT------------------------TATCCCTGAAGGCACTAAAAgctgaattt----tagattttct----AGTATATTTTCACCAAAAATTACCATTAATAATGGAGACTATTTAATACACAGATTATTAAAttgataaaaacatttaaatcaaaATGATAACGTGAGAAATCCATACACATTAAACACCATTCATTAGGAAACTGACAATTGTGTCTTCTCCTTTAAggtgattaaatttttttttcttatccttatGTATGTAGTTCACTCACCTTGACCTACCACTGTATAATTTGGAACAGTAGTTAAAAAATCTACAGCCTAATGAAGCACATT--ATCTCTGgcatttgcaattttaaaatatgttctataactgtaaaaataagagaaattcagGATAAAAGTGTTTCATTTCACAGAGGCTTCTCAATATAGGCACTTACCTTACTTTGCATTGGTGAGCTGATGCTGTGATGACCCAGACTCTTGGTTCGTTTTATACTCTTCAAGATAATTCCCCTCTGATCTT---GTTTATATAACTGTATTTGAATTACTGCTTTCTTATCTGAAAAACATCTACTGAAAATTCATATCAAACCccaaataaaatgtgtttaaacTAACAAGTTC-CGATATCTTA-CTCTGGAAATTCTGACATTATTTTAGTATGCATTTTCCTCtctcctatttcaaaataaaatttctcttttaaacataccctttttaatattaataaag----------------tatagccacaaaatgggggaaaataaataggaaagaaacCACTTTAACACCATATGTGG---AAGTCTTGGGAATGAAAATTGGTTTGAGGTTTTAAGTGCTCCAAATGTCACCTAACTGCCCCAGTAGAGGCATAAAATTATTCTTCATATTGAAAGCAATAACAACTATTTTCATGTAAATCTAGGGCAACTGACC------------TACAAATTGttgatttaaaaatgtgta-tagtTTGAATTAATTTTTCCTAATACTTGAAAAGATATGAAGGATAATTTAGATGTGTGAA-------TTTAAATAACAAGATCAAATCTAGTAGGATGTTAAACTGACCTGAGATCAAATTCAGGCCCTGTCATTTACTAGCTATGT---CATTCATGTGTTTGCccctctttacttcagttgtctcacctattaaaaataatagcagTG----------TTTCTGGAAGTCAA---------------------------------------------------------------------------------------------------CACAATGCCTGGCAC---AAAAGGGCTCAGTAAAACATACTTAATTTGTTAGAGTACAACATGTAATTGTTTGACAAATATTTTAGTCACAGGGCCCAGGATCTAGGAGGCAGTCAATAAATTTGTTGAAGGCACAAATGACTGAGAGAGTACCTATATCATTACTGAATTTTTGGAACAAATGTACAC-TTTTCTCCATCTCCATAGCTGTTACTCAGTTTtactcttttaaattattttt--cctcactGTAACTAAGGTATTATGCCAAACATGCATGGGGCATTTCCAAACTATCCTC--AAGAAAAGTCCAAATGAGTTGGTATCATTTGCAAA

a score=31466
s chr3           102789313 1150 + 160039680 TAACCACTCAGATATTCTACAGACAGCTGCAGGCAAAGCCAAGCTTAAAAACAAGCTTT--TGACAT-CTGTTATATTACATTAAAAGTTTAATTCGTTTTCAAAGAAAAGGGGAAAAGCCCACCTAACCATCCTAAGAAGCTCAATGGAGGAGTATCATCATAATATGAAACAGATT-GTTAACATTCTCCCCTCC--CCAGAGAGCAGGTGCTTTTCTAGTATCTAATAGTCTCTCTTTCCAT--------AAGAGTCTAATTTGGGGGCA------------GCAGCTTTTCTTTGAAACCAGTAGTTTCCTGTGAGAGTCACAATATAATGACCTGCCATTTAAAACAAAGCCATTTGTTACCTAACTTCTTGTAATATTTGCTCCAG-AACCGATGCATATAACTCA-----GGTGGAGGTGGCTCTAATGCGATGATC----GTGTTAGCCTCT-AAAGCTTCTAAGT-GGATGACAAACTTGATTTAA---ATATGGAACAA-GTCAATTTGCTTCTCTCTGTTGGTAACAGATGTAAGCC-CCAGTACTCCAAATTTATATGAATTTACACAAGCTCTCTAAAGTCTATTCAAAGAACACTTTTTAGAAATTAAGGTCATATATGAATATTAATTG---CTAGCATCTCCTGTAATAGAATTCATGGTGTAATAAAGT----CAGCACCAGTGCTTCCTGTGATCCACACAATC-CCTCTGTCCCTCTATATAACACTTTGCATTGCTACTTATATTACTTTACATAACCTCTTTGTAATTAGATA---TTTCTCTGGATGAATAATATGAGCAGAATAAGTTG-ATTCATAATAACAGGTATAACTACTTCTCAGCAGCTAGCCAGCAATATGCTATCGATCTTACTAAAAAAAATG--AACTTTTTCTTATCTTTGTTCTGCATACTTTTACTTTTAAAAAACGGTAACAGCATTGTTATTTTCAAAACTCACTAAAAGATTCAGCTAGGAAAGTTTGTAATCGGTGGTAACCAAGGAATAATCAACTCATAATGCAATCAATTTTCCTCACTATATAT-----------------GTGGGTTTAAAATTACCTTTAATTGAGGATGATGGACGTTCAGGAATCCATTAACTCATTTGTTCAGTAGGTTCA---TCGAGGCAGAAGCTGCCCTCAAAGGGTTCATTCTTAGCAGTCATCCAC--CAGACCCACtatgct
s HiC_scaffold_1 112995311 1176 - 233722169 taaatactatgaTGTTCCATAGATAATCGTAGGCAAAACCA-TCTTCAAATCTActtttattgacatatttttatattgcattaaa-ttttaactcatttttaaagaaaa-------agccaTCCTTACTCTTC-AATTAACTATAAAAAGGACTGAAATTGGAATATGAATCAGATTTATTATCATTGCCTCCTCCTTCCCCAGAGTGGGTActtttctagcttctaatatgctatatttccatttcattttaaaattctgagcaGGAGGTACCTATAAAAATATCAGTttatccatatgaattttaattaC--ATGAGAATCACATTAGAAAAGTCTGCCATTTGAAATGAACC-------TGCCTAATTCCTT-TAACactttttttaataaacaaaacagataattcACAGCAAGTAGAGTTGACCCTAATGTGCATATCTGACATTTAATTATCTTAAAGTTCCCAAATAGGGAGATAAAACTGatttaatatgtataaaattatgtCAACTTGCT---ATCTTTTGATAACAGATGAAAGCCACTAACATAGCAGATTTATATGAATATACACAAGCTCTTTTATGTCTACTGcaa-aatacttttt-gaaattaAGGTCATATATAAATGTTAATAGGAATTGTCAACATCTGCAACA-AATTAATAGTGTTATAAAGTTGATCAGTATCAACTTTTCTGTATATTAAAACTAGCACTTCTATTCCTTAGTATAATATCTTTCAG-gctacttat-----tttatataacctCCTGGTAAATAGATACTATTTCTCTGGCTAAATAATATGAGAAGTATTAATTATACTCAAAATAACAAGTGAAACCCCTTCACAGCA-----TCAAAAATATGCGGTTAAtctaagtaaaatttattttaaacttttttcatctttgtcctgcacac----atttttaaaata--gttataataTTGTTATATGTAAAAATCA-TAAAAGTTT--GTTAGCAAATT----AATCAGTA-TAGACAAGAAATAATCAACTCATAATGTAGTTAACTTCCTTTATAAAGTATTACGTGAATTTTTCCCAGCAAGCTTAGAATTATCTTCCATTGAGGACGATGGCTGTTCAGGAATTCATTAACTCATTTGTTCA--AGTTTCCACTTCATGCCAGACAATACTGTCAAGTGATTCATCCTTAACAGTCATCTACTTCTGCCCCACTATTCT

a score=4500
s chr3           102793751 134 + 160039680 TGATGACCACTGGTGACTGGTCACAGCTGCCTGATTTTAGCCTTCATGTGTTCATCTATAAAAATGTCATTCTCCAAGTTACTTTGGTTTAAAGAATCTGAGTGAGCCACATGGGTATTAATTATGGTTACTGG
s HiC_scaffold_1 112998376 134 - 233722169 TAATAGCTACCTATCACTGGCCAGAGCTGTCCTCTGGTAGCCCTCAGCTATCCCCTTGAAGGAACTCTAACCTCCACGTTATTTTGGTCCAAAGAATCTGGGAGTAGCAGGTGGATGATAATAATGGCTACTAg

a score=41579
s chr3           102800607 1900 + 160039680 TGTTTAATCTCCTCTAGTTATCATACTATCAC------------------------TCCAATAAATTTATTTGGAATTGAAAGGCAGAGTTAGGG------------GCAGCTAAACAAATCCCATACTATTAACACATTCATGTCACCTGTACACTGAACTGAATAGTT--------CCT--CTAAGTATAAT--CCAACAAAGTTGATTTT--TTTTTTAGTGAGTAAATGATATATCAAAATCTCAGGTACTATTACAAGGGCAGAGAACATCTTAATGAAATAGATATTAATTTAGCAAATA------GTAGGAGAATTCAGCAATGTAAGCAACATTTTTGGTGACAAG---AAATTCTACTTAGGGAGACTGCATGCCATTTAATA-TTATTGATTTTATGAAAGTCATTGGGGGAAAGTGATTTTATTTTCTTTTTCCAAGTCATAGCTCAAACAGAGGTTTCTTTGAACAATATAAAAATCTGTGTGAAACA--AATAACATTTTAAAATTGAA--AAATTGAAAATTAATAGAATAGGT----GACTTGCTCTATGGATTTTAATAATTTGTTAGA---TTTATGAAACATGATGTCTATAAAATACATTTTACCAAAGAATATATTTTCAATGTCTATTTATAGAATGATTAATTATATGGTAATATTTCTATATTTATACAAGTTATGGATATGCCTGAA-----TAAGTTAAAGGTAATGTTTTACAACTATTAGCTAACTTTAAGTGCTTTTATAATACTGATCTGTTGAAATTAATTGACGTTTTTTATTTCTTTCAGGAACTCTGATTTCATAACTGAAATGCTGTTAATGCATATTTTTCTTCTTTGCCATTTTCTGTTTGTAATCCACAGCTGATCTGTCACTAAT----GTTCTTAATGTACTACTAC---------------AGTTTGAATTCAGGTT-CCTGAACTATGAATAAAATATCTCTAACCTTTGTATCAACCAAAGCAATTTGCCTTTTGACATCATTAAATTATATTTATATGAAGTAGAAGATGTTTATTATCAGCTAAAGTAATAAAGTTATGTATATTTGTAATAGGACATGCATTAGACCTAATCCAAAA-----GAATCT----------------AAAATGTTTTCAACTTTTATTGAACCATTTTGATG---ACAATAGCCTTATCCTG--CCTGTTATTCTTAGTGATCTTCCTAAAACAAGTTTTTTACTCAGCTGAAAAGATGGATCAGGATTAGAAGCCTGTATACTTCATAATCTTT--AAAAATTTAAATTTCAAAAGATGGTATCTTAAACAATAAGGTCTGTTTTCCTTGCTTAAACACTACTCCATTTTTCGAACCCAAA-----------CTGCAATACAGCAGCTGATACAGTCCTACATAAATAAATGAA--GCTCGATTCTCCTAACTATTCTTCATCTCATTCTATTTTTTATACTGCTATTTCTTATACATTTGCTTTC-----TTGGTCTTGTCCAACTCTAGTCCTCCTATTTATGTCCAAAAGTCAATCTCCTA--AATGGTCTGAATGAATTATGTAAAATTATCATCCACCCTTCTGTAGCCTGTAGACATGACTACTATCaaat----taattataagtaatttgtttatttttatataaaatGTT-TCTACTTGGCTAT--GTCCTTGAGATCAGAGATTATATTGTTTTAAACAAGTctcaatccaatggcttctttcagtcttgaggtatgagcacttgcactccagagggtttgataagaggg------------aatactcccttcttgaatcacttcg-ttcctaggtttccataatttcctattctccttaggctt-cacctcctctactagcctctctttcttag--gcaatct------cccttgttttttcAGAT----ATTTTTGCTTCAAACTCCTGTGTTAACTCCTTTTGATTCTATAATTACATGTTATCTAAAAAGTGTATTTCCAGTCCAAGACTTGATTTTTAGGATTTTTGTTTGCTCTGTCTGCTGTCTGTCTCTCTCTCT
s HiC_scaffold_1 112998916 1923 - 233722169 TGTTTCATTTCCTCTAGTTATCACAACAtcacattttagagatgagaaaggtGAGCTACAGCGAGATTATTGAAAACTTAAAGGCAGAGCTAGGATTATGCACTCAAACAGCCAAACAAACCCCACACTGCTAACTAACACATATCACCTGTACTCTGGACTGAAAAATTAGTTTTGACCTAATTAAATATAGTAACCAAAAAAAACTATATTGGTTTTTAAACtggtaaataacattttaaaatcgaGGGCATTACTGTAAGTGCTAGGAAACCATTAATGTAAT---CAttcattgagaaaataaaaattgagagagAATTTAGCACTATGAGCAATATTtttggtgaaaaaaataaattcctcaCATTGAAACTGTAGTTCATTTAAAAGTTACCAATTTTATGAAAAGCTATTGGAAAAGGAGA----------------CAAATCATAGCTCAGGC--AATCTTATTTTAAC--TATAAACACCCATATCACACAACAGCAAAagttttagttaaaaataaacagacatttattgaaataatttaaaaatctgcacTA-----GTTATCATTTTGttagaagtttttttaaa----aggtttttagaatatattttgttGTAGAATAAATTTTCAACTTTTAC-------ATAATTTTCTATATGCTCGTATTTATGGATTGGTATAAATTATGTACATGCACACAAATATTAAGCTAATTGTGA----TTACAACtaattg-tagttttatatg-tcccAAATTACCAATCTTTTGAAATTAA---ATCTTTTCAGTTCCCTTTA--------GCTTTTATAACTTAAATAATGTTAAGT----TTTatctttcttgtcattttctatttctaagccACAGTTACTCTGTCACTGATTAAAGTTCTTAATGTGTTACTACCACCTGTGAACTATTAATTATAATTCAGGTTACATGATTTATG-----AATATTTCTAA-CTTCATGTTAACCAAAACAACTTGTTCTTTGATATAATTAATTTACACTTATACGAAGTag-aggtattt-----------------------------tatttttcttaggatACTTATTAGAAATAATCCAAAAATCTGGAATTTAAGTTTTAGACCTAAGAAAATTTTCTATATCTTACCTGTACTATTTCAACAGCTACAATAGATTTACCATGCTCCAGTTATCCCTAGTGATCTtcctaa---aaatctttttcttaacTGG----------TAGAATGAAAAGACCGTATGCCTTGTAATTTTTTgtaatatctaaaatttaaagtGTCATATTTTAAACCATAAAACCTTTT----TTGTTTAAACTTTATTCCCTTTTCTGTATCAAAAAAGTCCATGTTTTATAACATACTACTACACAAAATCCTCTGTGAAAAAGAGGATGGCTTAATT-TTTTAACTCCTCTTCACC----TCCATCCTTATTATTGCTAGTTCTTGTGTCTTGgttttctcttgttcttcttGTATAACTT--GTAATACTACTTATGTCC-AAAGTCCCTCTCTCAGCAGAAGCCTGAGTAAATGGCATGATATTATCATTCTCTTCTCTGTATCTCTTACATATGAATACTGGTGAATTACCTAATTATAAGTGATTCATTTGTTTGTATAAAACATATTGGCCCCTTGGCTGTGAGTCATTGAGAGCAGAGATTGTATTA-TTCAGGTAACCTcaaatccaattttttttttctgcctccaGTTAT------TGCCACTCAACAGGATTTGATCCAACTGCCTTCTTAATCAAATACTGCCTTctt-aatcattttgttttctaggcTTCAGTAATCCTTTGTACCCCTAAGGTTTATTCCTCTTCTATCAATCCTTCTTTCTCAATTTCAATTTAtactccttttgttttttaaaattaagactattagtacaa-----------------tttagatatgatgatcacat-tcatc---atagggaattt---gtacatgatTTGTACATGATggattttgattcctct-tttgtcctcttcccctcccctt

a score=9006
s chr3           102831749 277 + 160039680 AAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTGAATAAATTGTGGATGTTGGTCAGCATGCAGACACTGGAGGGTCAAAGCAGCAAAAAACAAGACTGGAGTTGCTCCCATCATTGATGTTGTACGATCAGG-------------CTGGGCAAGGGAAACCCCACTAAGCAACCTGTCATCGTGAAAGCCAAATTCTTCAGCAGAAGAGCTGAAGAGAAGATTAAGGGT-------GTTGGAGGTACCTATGTTCTGGTGGCTTAAAAGCCACA---GAGGAGGTTAATTAAATGCT
s HiC_scaffold_1 215599758 292 - 233722169 AAAGGGAGGCTGAACTTCTGCCCAGCTGTTGATCGTGATGAATTGCATCGTTTGAGTAGTGAGCAGACACTGGCA----AATGCTGCCAGAAAGAAGACCAGAGCTGCTCCCACCATTGATGTGGCACAATCCAGATGCTGCAAAGTTCTAGGAGAGGCAAAGTCCCCAAAGCAGCCTGTCACAGTGAAGCCCAAATTCTTCAGGAAGAGAGAT---CAGAAGATTaagggggaaaagagagagaaatagacatGTCCTGGTGACTT-GTAGCCAAATGGAGGGAagttatataaatgtt

a score=20538
s chr3           102840468 602 + 160039680 taaaaaaacatgtggaaggcaAATAAAATTGAACCATCTTGCTAATGGCAATTACTGCAAGATGACTGCTAAATAAAAGGCAAAAAAAAATGATGTAGAACAAATAGCAATGGTGTGGTGATTATAACAGAGCTATAAAGCTTCAAATCAGAATCAGACTTCTCATATTCAACACT-ATGCATTGGTAAATGACCAGCAAGTTATAGAATCTACCCAAGATGCTATTAAGTTTGGGCATAATGAAGAAAAAATGATTTAAAAAACAAAACCATTTCATGCTGAAAGGTCTTTGCAAAATAAAAATAGT----------------TTTATATGTATAT--------GAATCTATGGTATACAAAACCAAACCtttttt---attaaaaaaa---ttattatCATCTTAGAAATTTATTAACAAACCTTTGTAACTGTTGTAGGTAAAATGCTTTTGGCAGATGCCCGCAGATTATCTCTGTTATCTTTGGATTTGCCACTATCCATTGATGAGGAAAGCCGAGATATATTTTGTGAAGGAGTTGTTTTAGAATCAAACTTCCAACTAGTGGCTTCAGGTGATTCCAGTAAAGATGCCTGTATTTTCTACATTTAACAAAAGTGAATAAAACCAT
s HiC_scaffold_1 113024976 600 - 233722169 TAAGTAAACATGTAGAAGATAGTTAAAAC--------CTTGCTAGTGGCACCTGTTTCAGGATGACCAATAAAGAACTCTGGAAGCCAGATGACACAAgctaaagaacaaaagaa-agtaaCTGCAGTGATATTGTAAAATATCAAGTCAGACCCAGATTGCTCACATCAGAGATTTAAGCATTGGAAAATGACTAACAAGTTACATAATTTGTCTAGTATGCCATTA----TAAACTTAATGGAATAGTAAAAATGTAA----------CATTTCATGATGA--------TAcaacataaaactgaaaatttcaagGAACTAATTTATATGTGTGTTTAATACCAGATATATAATATGAGGAACTAAAATTCTTTTCTAATTAATAAAAGTCTTATTACTATTTTGGAAAT--GTTAACCAACCTTTGGTAGTGGTGTAGATAAATTGCTTTTGGCAGAAGTCCACATATAGTCTCTTTTATCTTTGGATTTACCATAATCAGTTGATAAGAAGTTTCGAGATACATTTTGTAAAGGAGTTGCTTTAGAATCAAATTTCCTGTAACTAGTTTCAGGTGCTTCCCATGAAGATGTCTGTATTTTCTGCATTaaacaaaaatgagtaaaaacat

a score=6768
s chr3           102848151 177 + 160039680 ATAACATTTGTCTTTCTTATTATGCAT-----CATCTATAAGTGGTTAGTCTTTGGTTATACTGATAACTGGAATTTACTCTAAAGAGCTAGAATACTGTACTCTAGGACAAAGTATATTTGTTAAACTAGCAATATTGCATCTATTCTAGGGACACCTTGGCTCCTAGAG----TAAAGAGAAAG
s HiC_scaffold_1 113029788 185 - 233722169 attatatttattgtttttattttgcactcCGCCATCCACCAATAGTTGAAATTCAGCTATAATGAAAACTGGGGGCTACTCTAAGGGGCTAAAATGTGGTCTTGTTAAACAAAGTATATTGGCTAAACTAGCAATATTACACTGACTTTAAGAA-AGCTTTACTTCTagagaacaaaaagagaaag

a score=61753
s chr3           102851436 3021 + 160039680 GAAAAGCTGTATTTTCTTACTATTAATTACCAAACTTTGTCAAAATATTCT----GTAACAT--TTATAAGACATCAAGTTGAACCATACCAAAATCATACAGTTATCTTATATGTAATGCCACAAAACTTACTTTTTCTTCTTTTTCTATTTCAAGTTGCTTCTTAAGGGATACAAGTTCATTTCTGATATTAGATAGTTCAGTCTCCTAAAGAAAAATAAAGG-TGAAGTGCATAAGCGCTTCTACAT-TTTCTCAAATCAATGAAACTGTAATCCAGTACTCCAAATAAATTCAGCTCTAGAACTCAG--AAAATATGAACGTTGATAACAGAACATAACCTCACTCAATGTAAGTAAATTTTAAGTTTCTCAT--AATTTTATCTAA----GGACTAAAATGGTCTATGTATACATATAA----ACATACACTTACTCATATTCTCTAATTCTACCTCACTCTCCTCTCCTAAACATCAAGGCTTTAAATTCA--TTTTAACTGACTTTT-TAACACCTCTGTTGAAAGGTCACACT-TTAGGCGACAATGTAAAATAAATTGGAAAAGCATTCAACTAGAAAATAAGTAA---TCCTTTCAGAT-----------TCTATAGATCAAATATAATGGCTCTACTTAATGTTATTCTTTTTTCTCAATCCTGT---CATTTTAAGAGTTGGCCTTTATTGATATTTCCTCTGTATCTTACCAAAGCAATCTTCGCTGATGACTGTTCTTGCTCTCTGTTTTTATAAAGTCCTAATTCTGAGTCTCTTTCTTCAACAATCTTATCATATTGGTGCTGTATTAAACAGA--AAAGGAAAAAGATTATGTTTTGTAAGATTGGTACGC---TACAAACAG-------AAGAACAGTATCACTATAAATTTACATGAATAT-GTACCTTCATATATATTTT--------AACAACCTAAAC--------------AGTGAAACATAAACAAACTTAGAATATAGTCTAACACAA---CAAGAAATAGTTATTTTAATTGGAAACACTAAAATTTCATCATTTAATAAGTATAGCTAagttgggtaagttcaccatgtccatagacctacaacttgggaggctgggaattgattatcacaaggttaatgccaacctgggctacaaagtcagtcttattccaTATGAATATAACaccaagatgtcttagaaaagttattgactccaaatctaggagcagaaatgcaatacaaggcttaaaattctttgtcatgacaagaaaaaa---atcaaagactactcaaatcaggccaaaaggacttgcttatcaattggaagaggctcttctgggacaaaggcaaaacaactcttcattatggac-----tataaacggcactggactgaaacTTAATCTATTAGCTTATAATATTACTAAGAGTCTGCATT----------CAAATTCCTATTAATACATTACCTCATAATAATGTTAGATTCCGGTACCA-----ATTTTTAAAAATTAATAGGTAAGGGTAGCCTACTTCCTTTCCAAATTTAAAGGAAAA---GGAATCTTTCCTAAAAGAAGAATTACCCAAACAATT--CAAAAATA--AAATGTACTCACTACAAATATTAAGTCTTTT--CCCAGTTTGGAGAGATGGGTCAGCCATTAAAAAGC---TAGGCTCACAACCGTAAGTTTTTCATT--------TATTTATTCCCTTGATAAAATT--TGTTCAGTTTGTAAATGTTACATACATTTAGCTAACAGAAATATTAATGAGAAATATCCTGGGTATGTAGTTGAA-AAAAGATGGTAAGTGCTATGAGACGACTAGAAGAATTCAGAAAACATGACTTCTTCTCTTTACTAGAGAAAGTAGCACCTCAGTTCAACTTTGAATGGTTAAGATCTGAACTTAAAGAAACAGGGGATCAATAATATTCAAGCTATAATTAGTTACTGTTATCTAGAAAATACTTTTTT--GATAAATTAGAAGACT-------------------------------GCCTTCAGTTCGTTTT---------------------------------------------AATACAAATATGCTCTAAG----------------TACTAATTTTATTATATTG-----TTACCTTATGTTTTTCCATAAGTGCTACCATTTCAGCTATTTTATGTTGGCATCGTAAATCAATTTCTTTCTGTAACTTTACAGCTTCATCAACTGTTGCTTTGGCTTTCTCAACCTATCAAATATTTAAAAAAAGTATTTCTTTTTATTTATTGGTGCTAAACCTTATATAACATTTTAAAAATTCAACTTTTCCATTTAA---AAAACATATGTTGAACTTACAT-AAAATATAAAACTAAAACAGCAGAAAATTAG-AAATGAAACAAAAAGGGAG-CACt-tttttatttattttaggattt---ttcaaaaagtaaaatgtattataaat----actttcataaatattt---ttaaaaat-tttaaattatattaCTCAACATTTAAATACTTAGAATAATGCTTTCTAT-----ATCTGATAACTTTTCT---TACTATAAATCTACTAAAA--CTTGTTAAATAACA---ATTTA----AAAGTTAACAGTACTTCtttttat----------ttttgg--------------agacagggtttctctgtttagccctgg---------ctgtcctggaactcact--ctgtagaccaggctagcctcaaa-------ctcacagagatc-cacctgcctttg--------------------cctcctcagtgatgaagttaaaggcatgcaccatcac----------catcacc------------------------------------------------atcaccatcaccaccaccaccaccaCTCCCCAGCAAAAGTACTAATT--------------------TTTAAA-GCTAATCAACA-------------AACATTTTTAGCACAGTAAGTTCTTGACATATTTAGCCTTTTCTACCTCTCCCAAAAGCTTTCCTTCTGATATCTTTTTGTTCTCAATTTCCTTCTGGTAATTGTTAGTCATTTCTTCAAATCTTTGCTTGGTACTTTCTAATTCCAACTCTAATTTACTGACCTATAAGTAAAGAAAGTAACA---ATTTTAGTGACTTCCACACTACTTGAAAATATTCCATATTCACCT----GTGTTGTAAACCCT--AAGATTCTT--------GAAAATTATGACTGAAACATTCTCTTACATTTTTCACATAGATATGTGTTTCAATTTTTAATGTCTAACTTGACACTTAAAATATATAGTCTTGCCAAGCAGTATAATATAAACAACCACATTTTTTATTTCAAAGCATTT
s HiC_scaffold_1 113043008 3185 - 233722169 GAAAAGATGCACTTTTTTATCTCTAGTTAACCAAATTTATCaagttatttctaaaataacatgCTTATAAAAATGCAA----AGTTATACATAAACCCTATAGTCATTTTACCTATTATGACATAAAacctactttttcttctctttctatttcaAGTTGCTTCTTAATAGACAAAAGTTCATTTTTGAGATTAGATAGTTCAAtctcctaaagaaaaaaaaaaaacaaagtttgaaaGTACTCCCATATATTTTTCATGACTATGAAAATGTGAACCAGTGTTTCAAGTAGTTTCA-----AGTAGTCAGCCATATAAAGAAACTCACTAATAAAATAT---CCCTCAAAATGTCAGCAGATACAAAGATTGTAAGTAGACTTTACTTAAACAAGGATTAGTTTTCTCCAAAGAAAGATTTAACACTAAGTATATTTGTCCTTATCCTCT--CCTAATCTCACTCTCCTTTCCCAC---TCAgagcttgaaatttactttttaactGAAGCTTATAATATTTCACTTGAAAAGAGAATTTATTATgctattacaaaaaataaattagaaaactaCCTAC---GAAGATCTGTAAAAATCCTTTCAGATAAGACCATGCTTCCATAgttcaaaaattattattttatacgATACTATT--TTTACCACAAGCATGGTAACATTataaaaattg-------ttaatatttgGTTTGTATCTCACCAAAGATGCTCTCACAGATGACTGCTCTTGTTCTTTGCTCTTACAAAGTCCTAATTCTGAGTCTCTTTCTTCAACAATCTTATCATATTGATGCTGTGTTAAAGATATTAAAGCttaataattatgtttttaaatattggtATTCAAATACATGTAATATCCCCAATAAAAGGATGTTTATTACAGTACAGATATATAGCTTTTTCAAGTATATTTTTTCATTGAAGTAACCTAAAAGTTATTCAACAGCAAGTAAAACTTATACAG--TGTGGAAACAATCTAACCTAAGAGTAAGAAGTAACTCCTTTTATTGGAAACACTAAA-TTTCACCATTTAAAAAGTA---------------------------------------------------------------ATCAGAA--------------------------------------------------ACATGAGGACTTCTTAGAAAGGGGGCCAACTCCAAATCTgagacagaaaacacaaaaggagCCTTAAAAT-----GTCATGACAAAAAGTAAGCTACCAGAGActattaaaatcaaatcaaaaggaattATTAGCCAACTTTAAAAGGTTTCTACTGGTCAAAGGTGAGACAATT--TAAGTATTAACAGCGATAAAAGTTTCACTAGATTGAAATGTAATAAATTTGTTTA----ACT-CTATGAGTTCAcgttacttattttttaaattttcattagt-------tACATAATAATGTTAGATTCCAGCAccctactcatttttaaaaatgaataggtAGATATAGCCTACTTCCTCTCCAAATCATAAGGAGAATAAGGGATATT-CCTAATAGAATAATTGCTCTAACcattaacaaaaatagaaaacaaaagcacCACAAACAGTAAGCCTTTCAacctattt----------attcttttattaaaaattatttagcctGTGGGCC--AGGGATATCACTCAGCAGCATAGCCGCCTACTTGGCAAGCTCAATGTTTAGT----AAGCATTAGATACACATAGAAGATACAAATATTACTGTAGGATATGCtgaatatgtatttaaataaaatatagaaagtgcTATAGAACTACCAGAACAGTCTAGTAGAG-------------TTTACTCTAGGATATGACACCCAAGTCCATCTTTGTATGGTTATGAGATGAGCTTAGAGAAACAAAGGATCAAGAGTATACCATCTCTAATTAGTCATTGTTGTATAGACAATAATTTTTTCTGACAAATAAGAATATTATAAGGAATTCAATACTTTTTGCACAGAAATGACTTCAATTAATTTTTGATAATCCCCTTACACCTTCCCTCTTTGCTCTCTTGTAGTGTGAACTGCAAACATGtcctaataaaagaaaacaaaaattagtaattttattatatgaaaaaattacCTTATGTTTTTCCATAAGTGCTACCATTTCAGCTATTTTATGTTGACATCGTATATCAATTTCCTTCTGCAATTTTACTGCTTCATCAGCTCTTACTGTTGCCTTCTCAACCTATCAAAT----------AGTATTTCTTAATATTAATgcacaaaaaac-----------------aaatttaacttAAATGTATAAAGCaaagtatatatt----ttacataaaaatagaaaactcaaACACCAGTAAATTATCAAATCATGCAGAAAACGTGTCAccattatggcttgtatctagatgtacccccaaagtCTTCAAtcactcataggtggggattttcagTGGTGGCTGGATCAAGGATATGtgaactaaattagtc--cactgattggtttagcatagctATGGGTATGAACAATGTGAAGGATCACCTGGGTGTGGTGCATTACCCAAAAGGCTTATAGACTAAAAGGGATATAAGAGAAAGAGAAGCTTGCTGCTGTTTGTTGTCTGCTGCTCTTGGCCTTCTGCCCACCAAGCCAGGGACTGTTTGTGCCCCTCTGTCATGTCACCCTGCGTTGGAGCCAATCaactattgactgaaacctctacaaattgtgagctaaaataaatctcttctatttttaatttgtggatgtcaagaattttttcccagtgagaaaagtaactgta---aCAATCACAGTTTTAGCTTATTTCccaatgtttatatttataacaGGGATACTTTTTGTTTCTATAGAAGTTGATAATTGATTCtaatataaacattaaatttttctaaaaatcataatttaagaatcgttacttttttctttaaatgctaGTGAATATAGAATTTGATTCTATATTCTAAACATATTTAGTTCTAAACATATTTAGTTTTTCTCACCTGTCCCAAAAGATTTTCTTCTGATAACtttttgtcttcaatttctttttgataGTTGTGAgtcatttcttcaaatttttgtcTGGCACTTTCTAGTTCTAATTCTAATTTACTGACCTTTAAGTAAAGAAAATAGCATGCATATCAGTAGTATGCTGGATTAAGCAAAATA-TCCATATTCATTTGGTGGTTTTGCTAATGttacaatattatttattcaCGGAAAATTATGGTCGGATCATTTCCTTAGATTTTTGACA----------------------------ATTTTATCCCCTAAAATACATACTCTTGACAAATA-------ATAAACAATCACA-AATTTATCTCAATGCATTT

a score=12780
s chr3           102864617 870 + 160039680 TTAAAACACACATATATACATAGAAGCATGAAAACATGTATTTTTAAGTTGCTCACATGGTTCTGGCACAGCTAAATCAGAATAAACATTCTGTCACATCTATAA--GATGTGGTATCTCCAATATCAAAATATAATAGTATTGAAATGTAAACATCAAATTATAAATAAGTAGTATAGTATTTCTAAAGTCTTATGTATAGACTAGCATTTAATAAAAGAAAAATAAAAATGTCAAATACCTTTATCTCATATGCATTCAGTTGTTTGATTTCTGCTGAACTCTTTTTTTTCAAGGTTTTATTCTATGGAAAGTTAATTATAGTTAAT---------------------AATCACAAAGCTGATTAAGACTTACAATGCCAAT-------------------------------------------------------------------------------GGCTTACACTTAAATCACT---------------------------------------------------ACAAATG-----------------------------------AATGTATTGTTCTCTATAACTATAATGAAAATACTGGGATGATTTTGAAAGCA--TATTTAGAAAACTTACCTCCTGGTGAAGCTCTTCAATATTCTTGCTTTTATTTTCAACTTGTTTCTTTAAATTATTACACTGtaaaattattttaaaaattataCAATTTGACTCAATATTCTAATCAAAACAAACAGTTTCAAAT-----AAAATACTATATAAAGTAACATAAGGCTCACTTGTGATTTCAAGAATTTCTGTTGGTGTAAAAATATAGATTTTTATAAACATAAGGTATAAGTATAAACtaaatataaatatataaaaattttactaaatga--taaatatattattta-atatataatgaatataa----atataaattaaaCTTACAGGCAAAATATGCCTCTTGGTCAAGCTTATACAGAAGACTGGATATAATTAGAGGGACTAAGAAAAGCATC-AGTAATGGTAAGAATTAAAATACTGTCTTCT
s HiC_scaffold_1 113066351 943 - 233722169 ttaaaataaa---atttaaata-aagaatgcacacataaatttttaaagcGGTTACA-----------------------GATGACCACTGTATCACAGCTACAACTGATCT--------CAacccaaaaaaataataatctttgaAAGTAACTGTTATGATataaaaatgtgatataaaatttctaaattctcgtgtat------gtttttta------aaaattaaaatagttaaataCCTTTATCTCATAAACATTTATTTGCTTGCTGTCTGCTGTCCCCTTTTTTTTCAAGGCCTTATTCTGTAACAAGTCAAAAATAGAGAATATTCAGTACttagtaatttaaaattacataactGTCACAGATTTAAATTAGTAACAGAaagtattattcttttatttttttattttttttattttttttgtcttttttgagacgtggcctcgctatgcagttcaggctggccttgagctcactttgtagcccaggctggtcttcaactcataaggatcctcccacctcagcctcccaagtgctaggattataagcgtgagccaccatgcccggctaaaagtattattttctgaaactaaggcaaaaatattattttgatgttGAGAACAGTTATAAATAGTACCTACCTCCTGCTGAAGCTCTTCAatatgcttgcttttattttcaacttgtttccttaaattgttacactacaaaa-----tgagaaattagTTA-------TCAAAATTCTAGACAAAATGA----TTTTAGACTAATAAAGATGTTATATAAAGT-------------CTTGTGTT-------------------------------AACTCCATTAACATAAAAcgta-----aagttaaatat---tttaacgAAGTTTCACAATACAAATTTGAGATGTTATTCATCTATTTAAATAACATGAGAACATCTATTTTAagt---------aaatatgttctgtggtcaACCATATACAGAAGGCT--AAATTATTAAATAGCTTGTGAAAAGCAGCTACCAGAGCTAAGaat---aat-ttgtcttct

a score=11222
s chr3           102876287 312 + 160039680 ataaTTTGATAATACCTTGCTTTCTAATATCTTCATCTGCTTTTCTTTCTTTAAAACTTCACATTCAATGCTTCGAGCCTAAAAAAAATTGTTTTAAATCATATTTAAAAGACTAATTAGAATTAATTTTCTTACGTATTTT---AGAATGAAATTATATAGTTT---TACATATTTACAAAA-ATATTTATTTGCATAT-CCAGTTTGTTTCATTGTCCTTTTAAAAAGGAAAATACCTTTATGTGAC-----TGTTAACTACCTTAA------TATTTCACAATATATATGCCT-AAACTATATATACACAAGTTATATATATTGTTTTG
s HiC_scaffold_1 113069984 328 - 233722169 ACAATTAGGAAATACCTTGTTTTCTAGTATCTTCATTTGCTTATCTTTTCTTAAAACTTCACATTCAATGCTTCGAGCCTAAAAGG---TATTTGACATCAGATTAAAAACGTTAACAGAATCCAATTTTCTTCTGTatcttttagaaatgaaattataaaacttaGACATATTTCTACAAAACATAGTTATTCAGGTCTCCCAATTTATTTTagtgtccttttttaaaaacaaat-catctAAGTGATGAATATGTTGACCAGCTTGATTTAATTGTATCacaatatacatatatcaaaatattagtGTATATGCCATAAATATAATTATG

a score=13235
s chr3           102878635 416 + 160039680 TTTAACCCACAATTTAAATATTAATGGCTTA-----GTACCTAGATCACTAGTTATTTATATAGTAGTACATGTCACTTTATTGTCTGTATTGCTTTTATAACTTAAAATTTTGAGTCTAATCTATTGTTAAGTATAACATACATTTTCTTCACTCTTGTCCAATTTACACTTAACTTCATCTCCTTGCTGTATGAACTCTTTTCTTACTGATTCCAGTTCATCCCTAAAAGGAAATACAAGAGAATAGCATCATAATCCAAACCATATTTTCATTTTATCTCCTAAGACTTTTTTTTAATGATTGTTTATAATTTTTTAGGTTTGAGTTCTTATTTTGATTAGTAACTTTTTATGCCTGTCTATTAATAGGCATATTTCTATTCCTACATTTAAGTTACTATACA-GATTTATCTTTAAAT
s HiC_scaffold_1 113072766 403 - 233722169 ttttatctttatttttaagcatAATGACCTATAACAATCCCTACATCATTAGTTATTTGTACAACAGTGTATATTTTTTAGACATATGAAGTCATTTTATGAACTGAAACTCTGCACAAAAACTATT---AAATAAGACATACATTTTCTTCACTCCTGTCCAATTTACATTTAACTTCATCCCCTTTCTGTTTTAGTTCTCTTTTCACAGATTCCAATTCATtcctgaaaagaaatgaaacag--tgaTATTATAatccaaaatacattttattttt---tcccaata----tttttaatgatcaACTA----atgttagttttacttttttcatttttttgataatTTGTCATGCATTACTATCACTAGATACACTTTTGTTACCA---TTAAATTaacttacattatttattttaaaat

a score=33076
s chr3           102880774  957 + 160039680 CCACAATGCCCAAGTGGAAAGTTAGCATGGATA---GAGCAATGAAGGCTGAGCCCAAGCACCCCTCCCTGAGGCTGTTGACCAAGCCTGCCCCAGCAAAGGTTGACAGGAAGCCAGAAAAAGGCCATGGGAAAGGATAAAGATTCAGGCAAAAAAGTGCAGATAAAAGGGAAGAGGGGAGCAAAGGCA-AACAGGCTAAAGTGGCTGACCAGCAAACTACAGA-------TCTGCCTGCAGAAAATG-GAGACAGAACACCAGAGTCCAGCCTCTGA------AGAAGAGAAAGAAGCTAAGTCTGACTAAACATCCATCAAATCTGTCTGT-----GGTCCCTGCTTCCCTTCTTATACAATCCAGAGGAATATTTTTATCAACTATATTGTAAATGTGAGTTTTTTAGGAGCTCTAGGAACATTTGTAAACAGTAGA---TCCCACCTCATCCCATTGTTTAACTGT-AATGGTTTTTTTTAAAGAGGTTAAATCATTTGCTGGTTGTTTATTTTTTGATACAACCAGAAAATAGCAGGATACTAAATCAGGAGAGGCTGTAACTGTCTCCGGGGTCACCATAACATTCTGTAGA-GGGGGCTAGTTTTATATCCTACAATACAAAGCGTACTAAATGGCAATTTGGCATCTCAGTCGTGCATT---TGTGTCTGGAATATTTTCAGTTATATCTGGTCCCGTGTTTCTAGTAGAACCATTTTGTAAGAAAGGCAGTCCTTGATCCTTGCCCTGTCAGAACTGTG-----------ATGTCTGTGGTCATGGCAGTCCA-TATTCCTAACAGTTGTGGTAATGTGCTGTGAAAGATGGAAATTTTGAGTCTGTTCTGTGTGTGACATACAATTGTAAGTTGGTGGA--TTGAGGA-----TTATGAGCATTT---GGTTGTTATAAGAGCTCTTAG----GGAAACTTG---CCAAGTTTGAAG---CTAGAACATCATTGGAATAAGTTCAAAGAAAAACAATACATAGCTCATCA
s HiC_scaffold_1  23882081 1001 - 233722169 CCAACATGTCCATGCAGAAGGTCAGCTTGGCCAAAGGggcagcacaggaggagcccaggaggAGATGGGCGAGGCTG---GCTAAATCTGCTTCTGCAAAAGCGGA-ATGAAGCCA-AAAAAGGTAGCGGGAAACGATAAATCTTCAGACAAAAAAATGCAAGCCAAAGCGAAAGGGAGAGCAAAGGGAGAACAAGCCGAAGTGGCTCATCAAGACACCTAGGAAGATTTATATACCTGCGGAAACGGAGAAATGAGAAGGGAGAGTGCAGCCTCTGCCGGAGCGGAAGAGAACAAAGCAGAGTCTGACTGACCA-----CATAGGTGTCTGTTCAGTGGCCCCTGGCTCCCTTCCTGTACAGCCCAGAGGAATATTTTTATCAACTATTTTGTAAATGCAATTTTTTTAGTGGCTCtagcaacatttttaaaaagaagggacTCCCACCTCAtcagattttcaaaatataaatgatttttttt--agagGTAAACTCATTCgctggttgtttattttttggcacAATCAGAAAGTAGTGGGATCCTGAGTTACGGCAGGCTTGGACTGTCCTGGGTGTCAGCTCAGCACCTCACAGGTGGGGGTTAGTTTTATATCCCAAGATAC-AAGCACACTAAATGGCAATCTGGAATCACAGTCATGCATTTAATGTGTCTTGGGTATTTTAAAT--GACTTGTTCCCATGTTTTTACtagaattgcttctttaaaaaactattttctgaTTGTTGCCCTCTCAGAATCGTGTGCACTTCGTAACATCTTTGGTCGTGGTAGTCCAGTTTGCCTAA---TTTTGTTAATGTGCTGTGAAAGACTGGAAATTTGAGCATGCAGTGTAGATGACATGAAATTGTGAATCAGTGAGACATAAGTAACACTTTATCAACGTTTGAAGATACTCGTACTTAATCTTGGTACTGAAAATCTGCCCCCAAATTTGAAGTCACTGGAAAGTCACTGGAATAA-CGGAAAAAGAAACAATACGTGGCTTGTTA

a score=8875
s chr3           102881414 310 + 160039680 GTGTCTGGAATATTTTCAGTTATATCTGGTCCCG--TGTTTCTAGTAGAACCATTTTGTAAGAAAGGC-AGTCCTTGATCCTTGCCCTGTCAGAACTGTG-----------ATGTCTGTGGTCATGG----CAGTCCATATT-CCTAACAGTTGTGGTAATGTGCTGTGAAAGATGGAAATTTTGAGTCTGTTCTGTGTGTGACATACAATTGTAAGTTGGTGGATTGAGGA-------TTATGAGCATTTG-----GTTGTTATAAGAGCTCTTAG--GGAAACTTG---CCAAGTTTGAAGCTAGAACATCATTGGAATAAGTTCAAAGAAAAACAATACATAG
s HiC_scaffold_1 185222970 342 - 233722169 GTGTCTTGGATATTTTAAATGGCTTCTATTCCCTGCTGTTTTTAGTAGAACAGTTTCCTAAGGAAAACTACTTCCTGATGGTTGCCCTGTCAGAGCTGTGTGCACTTCGGAACATCTTTGGGCATGGTAGTCAGTCCAGGTTGCCTAA---TTTTGTTAATGTGCTGTGGAAGATTGAGAATTTGAGTGTGTGGTGTATGTGGCACGAAACTGTGAGTCAGCGGGACGTAAGTGACACTTTACCAGCATTGGAAGACACTGGTATTGAATCTTTGTGCTGAAAAGCTGCATCCCAAGCTGAAGCTGGAAAGTCACTGAAAC-AGCTGAAAAAGAAACAACACCTAG

a score=18411
s chr3           102895811 759 + 160039680 TTTTGAAGTTAAGAAAAAAA-GTCACTGATAACTGCCAACTCACAATGATATCTTCTTGATGTTTCTTGAGTTCTAGGGCCATATCACTTGCTTCTTGTACAAATTTTTTGTTCTCAAGCAAAAGCATGTCACAACTTGCAGTTAATTCAGTATTCTTAAGTCTGTTTTAAAAAA--CATGCCATTTAGAAAGAATTAAatatg-atctataaaatttaatt------caaaataatcttaatagaaggaataggcagga--tataaataa---------tattggccattaattcttgaagcaaagttatattttcatgctgcttcattacattatCTGTTCAAATATATAAATTATTTCTA---TATTAACATTTCATATCACACATTTCTATGTATATTCTCAACACTCTCATTACTTCAAAA----------AATATAAAGCACATA---TTTTCCACATAATTGCTCTATATCTAATAATCTATTTCAAACTTCTAAAACTTTAATTA------GAATAAAGCTTGAAGCATGAAATATTTGTAATTAAATG---------------------------CAACCATTCTTACAAAGTCGTAATTGTTCCATAGTGAAAGAGAAATTATTGTTGCTACTAGCTAAAGCCAGTATCCATTT-------------GTAGGGTGTGGCAATACCAAATGATCTCAGAAGTATCTCCTGCTTCCTCTTACTTAATGATATTGAAAACTCAGCAGAGAAAATAGAGGCTTTTTCCCCCTAAGTAATGAGAGATT-AAAAAGCAAATATAGCAAGaataatatttttgaaattaataataaataa
s HiC_scaffold_1 113077004 795 - 233722169 TTTTACAGGTAAGAAAAATGTGTCACT-----TTTTCAACTTACACTAATATCGTCTTGCTGTTtcttgagttccaaggccatatCACTTGTTTCTTGTGCCAGTTCTTTGTTCTCAAGTGACAGCTTGGTGCAATTTATAGTTAATTCAGTATTCTTAAGCctattattaaaaattcataCCA-----AGGTatttatatatgaagttataaaaTGACATTACATGATATTATAATcttaggagaaagga-agaaaggagttATAAATAAAAGATTGGCTACTAGCTAATAATTTCTGAAGAAGTATGATGGATTCATCC--CTTC--TGTTttgtatgtttgaaaat--------tttcaacactgtcaaaatatcagaaaatagattTCCTTGCATATTTCC--CACCCTCATTCTTGAAAAATTTCGTACAGATTGTGAAGGGTATGCTTTTCTTCATGTaattttt---tgtctcaaaaattgtTACAAACTTCTGATAATTTGATCACAGTAGGAATGaggcataaatattaaaatattttcataaaaataaaactaactcTAGTTTTGCACAACACTAAACTACTCCTATAAGGTTTCCAATGTTCTACATTGCAAG------------------TAGGTTAAGACATAatcaattttaatgaagaaaaggtAGTGTGTTGTTTTACTGAATGATTCCAGAAATACCTATTATCTCTTCCTATTTAGTAATACTCTTAAttcatcaaagaagaaataaagttctTTACC--ACGCAATGACAGATTGAAAAAGCAAATATAACAGGAATAACACATCTACACTACAGTATGAATAA

a score=25047
s chr3           102898200 2027 + 160039680 CATATAATTATCTTTATGGGAAACTAAATGTCTCCCCAAAATTAAT---GTTAGACCATCTTTATGTTAAAAttccacattcatgggcttatccatctagagattgaaactgttcaggaaaa----tatgtctggactgaacatataaacttcttgccattatttcctgaatacagtagaacaaacagaatttacataat--tttcagtactgtaagtagtttggaagcaagctaaaactta---cttgaaagaggatatttatactttatatgcaagcactgtgctgtttgtatataagacttgagtatctacagatttttctatgtttagggtttcttgaaccaatGTTCATAAAAGACAAGAGAAAACTATATACTGATAT--GAAATGatttaaatttt-ttatttattattttaCATAAATGATACAAACTTTCCTAACATAAAGCTTTTGACTACAAAGCACGGTccttaaatttgtaatcctcttgcttcagcttccagagtactgagattacatttgtgcaccatcatgcctggctTTCATTTTGATCTTTAAGTATGAATAAAACACAATTTCAAATCCATTGATGTAAATACTAAACACTATTTA---------CTTTTACCATAAAGCTTAGTA---------ATTAACTGTATGTAGTTAGGTGAAAAACATACTTCTCTTTTTCAAGCTCAGTTTTCATTTCTTCAACCTGTTTTAAATAATGCTGTTCACTTGTTTTAGTGACAGTTACTTGTTCTTGCAAATCATGGACTTCTTTCTGTAAAATAAATGTATATATTTATTAACAGATGCTCTATCAGTTTTTTTCATATAAAAGACATAGTTAGgctgggcatggtggcacaatcctggaaactcaggaggcaaaggc------aagtagatctctgtaagttcaaagctatcctggtctacatagtgagttccggaaagcaggagttccatagacagtctcaaaaaCAAAGAAAGACTAAAAAT---AGATATGGTTTCTGTAAAAGTAATCAAGCAATACATTGGAGAAAATTTGGCAGGatattaaaaaatattttttaaaa---------tatttGggggctggagaaatggctcagtggttaagagcactgattgctgttccagaggacataaatttcagtaaccacatggtgactcata---------accatctgtaatgtaatccaatgccctcttctagtgtgtctgaagacagctacagtttacttaaatgaat--aaaataaatcttaaaaaaaaaGTTTAAAAAACaagatttatttattttatgtctgtgagtacactgtcttcagacaccaaaagagggcatcgaatcccattatagattgttgtgaaacacc--atgtggttgctgggaattaaactcagaacctctagaagaataatcagtgctcttaaccactgagacatctctccagccccCCAAAAAAATAttcttaagacagggtctcattcagcccaggctgagtttaagaacagtggtcttgaggttgactt-tgaactcttgattttcctgcctttccctccaaagtactaggattatatatagatataaatatcatgttcagctAAATACTTTAAATTTAAGTAAACAATGTG--------ATAATCACCTTAATTTTTAAAATTAT-----------------CAATGACACagcctagcgtggtggcgcac---------gcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaaatgagttccaggacagccaggg-----ctacacagagaaaccctgtctcaaaaaaaccaaaaagaaaaaagaaaagaaaaaaaaagaaaaagaaagaaaaagaaaaCATATCTTTAACAAACCTCTCTGGTTTCCAAAAGGAAAGTTAGTTCTTGTTCTTTCTCTTGTAATTCTTCAGCAAGCTTCTCAACTTGTTTCTTTTCATCTAAAAGTTTTTGATCTTCTGCCTAAAC-ACAATAGAAAAAAAGTGTGACAGTCAAACTACGTACATATTGAAAATAATTGAACTGCCCAA--AGAATAATATAAAGAACTACAGG
s HiC_scaffold_1 113078185 1821 - 233722169 caaataattatttttatgagaaaatgaaTACCTCCATAAAAACAATACTGTTAGTCC-TTTGTATCCATATGTTCTACATTCATAGAGCCAACCAACTACAGATtggaaatattcaggaaaaaaattggATCTGTACTGAACATACAGATTT-TTGTCACTATTTCCTGAACA----ATAAATAACCG--TTTATGTAATACTTTCACTGTATTAGTT--TTTATAAGCAAGAGATAATTCAAAGCATATGAGAGTATATGCACaagttatatgcaaataataTCCCATTT-TATATAAAGAACCGGAACAGACAGATTTTGGAATACTCAGGGGTCCTAGATCCCATCCCCATGAATAGCAAGGGAAAACAATATAGCTATCTTCAAAGTGAATTAACCTTTGTTATAGGTACTTTCATGCcaatgatacata----------------------------------------tatatttg-----------ctttaGC---AAAAAAACTGG---TAAATT------------------------ATTCTGATTTCCAATTAGGAATAAATTGCAATTTCAAATTCATACctgtaaatattgaaaataattcaataatttatttattaccaGATAACTTAGTATGTGGGTACATAAACTAGATATAGGTATATGGAAAACATACTTCTCTTTTTCAAGCTCAGCTTTCATATCTTTAATCTGTTTAGAATAATGCTGTTCACTTGCAGTAATGGCAGTTAACTGTATTTGTAAATCAtgtatttctttctgaaaaaaatatataaata-----cggCAAACACTTTCCcaattgttttcatttaaaagataTGATTACTCTAAGGA-ATTAAAGGAATTAAAGTAATGTACTGGGCAAAAATTTggcaaaatatatc---aaatatttaaaattgaagtAGACTTCATAggataatc-----------attttaat--------ttaaaaacaatgagcaatgaaaaatacaagacaaGTAAATTCTACTTGATATTCTGAAATTCAAACAGAAAAATTGtattatatattacaaaatacTTTTTATGAATTTCACTCTACCTGG---------------------------------TAATTTCAATT----AAAACATCATTatcattaaaaaaatgttaattaatgAAACCaggtactatttttaa---aaactaagatatTCTTACTAT-TATAAAAAGAGAGCTGCAATT--CTGTCATGGACTagaaatacactttaaaataGA-----CAAATTCCAAAGTTATACA----------ATGagtac----tataaaaatataaactaagaaCAT--AAACTCAACAAAGGCT------AAATTTCTAATGTGCATGCTAGAAAT---ACTAAAAACATC---AAGACTA--CAGTTTTCATAA-----------------------ACCAAAGAATTATGCATA------------------------------------------------AGGTCAATTTCTTAAgtgttgatttttctctctcac----------------aCTATAACAAGA---AGGTATCATACTCGAATCAATCATTAGCATTTGAAAGAAGAATacgtttttggtttttttgttttgttttttgttgttgttgtttggttttttgagacagctatgtagcccaagctggccttgcacAACCCTCCTGTctttgcctcccaagtgctgggattataggcatg-------------tcaAAAACACATTCTTTTATAAAAGAGGTTTCacaaaaatttgtgaaatctttTACAAAGCAA--TTATCTATATATATCCTGTAAATTTATATTCTATTAACATACATATGAACAAAAAAA----------TCCTTAAACGAACCTCTCTGATTTGTAAAAGCCCAGTTAGTTCTTGTTCCTTTCCTTTCAGTTCTTCAATAATCTTCtcaatttgtctcttttcatcTAAAAGCTTTTGGTTTTCtgcctatttaaaaatattaacaaatcatGAGCACCAAGCTACATACATACTCAAAATAACTAAACTGTCCAAACAGAGCTGTGGAAAGAACTATGAG

a score=10172
s chr3           102913368 336 + 160039680 ttttataattagttattaaaGTTATCAAAGTATACTTC--TCTCTAAATCTTACCTAGTTCATTTGATTTCTTCTGGAGTTCCACAGTAATCAGTTTCAGTTGGTCTTCATTTTTTT-CCAACCTTATGAGaaa----attttaaaattcaaattattattttaGGTACCATTCATC-----TAATAACTAAAACTGGCACAATGTAACAGCTGATGTATCTAAAATAGATTCATT----------CAGTAATTAA-ACATTAAGTA-TTAATCTATATAAGG-----CAGtttaaaataa--------------aaattataagt-----ataattaCATCTACCTAAAATCTTAAGTCTT-------ATAATTTGTATCTTAATTGCTA
s HiC_scaffold_1 113096109 385 - 233722169 TTTTATAATTAGCCAATAG---TATCAAAGTATACAGCATTGTCTAAATCTTACCCAGCTCACTTGATTTCTTCTGAAGCTCCATGGTTAGTGTTTTCAACtgatcttcatttttttcccaatcttgtaaaatatgttattttacaATGTAAAACATTCTTTTGGTCAGAATTTATctaccataaaaactaaaactCGTACAATTCATCAATTGTTATATC-ATAGCAAAAACATTTGCTCAACTACAGTATTAAATATATTGAGTActtactttgtatatagtataatatTTTGGAATAAGATAACACTATTACaaatcataattttatattaactATATCTAAATAAAACCTTAAGGCTTACTGGTAATAATT--TATCTTTACTGATA

a score=34517
s chr3           102914315 1729 + 160039680 ATTGGAACACATTATTCTACAGtaatttataatttta----ttatttaCAAATTG---CCTTGACAAG----------------TTAATCAGAAATA--TATAATAGAAG-ACCTTAAAAGGTTACATTTTTCTCCTCACT-ATGTACAG----TAGAAAAGAAAAATTAAGTATATCCAGGATATAAGTTTGGAGAGAAATTTGTTCCTCTCATTTATTCTGCCAAATTTAAATTGATCATGCTAACAGGACAAAAATAATTTCCTAGGCCTCAACATACTTTTATAT---------TAAAATCACATAAAGCAAGGAAAAATAGAGCTAGTTGTTGAT---CTAATTTTAAATAAATACTATTTAGGTTAAAAGCAAATGAGTATCACATA-----------------------------TAGAGTGGTATTTACTTTATTCCAAGATAGTTGCTAAATTAATACATTGTAAGTAAGGTTACAGACCTCAGTGAAATACATTTTTTAACCTGGACATTATTCCTATGACACTAATAATCCATACAcagtggttctcaacctgtgggtcacaacccctctggcaaacctgtctccaaaaacatttat-ataaaatatcataagtcacaaaattacagttttgaagagaaatttaaattattttatggttggggtcaccacaacatg---aggaactatatcaaagggtcacaacattagatggttgagaagcactgGTCCACACTATTAATAAAC----ATGTCCTACCACTGAACCAACATTTAAGGACTTGTCTATATAACTTAACAGCAAAGCATGCTTGGGAACTTT-----TCCAAAGAATGCCTGATTTTTAATGGTACTGAATATCAAAAGTAAATCATTTTTATGTATTTACTTGTATGTTTAAAAACTGTTTCACCTTTGCTGTTCTGTTCTCAGTAATTCCTCCAAGGTACATGTAGTAGCTTTAAGTTCAGTCACCACAAATGAGTGAGTAGTTTTAGCTTTGTTGAGTTCTTCCATTTGAGCTTCTTTTACTTCAGTGAGCTGAGAAATCGTTTTTGTTGCTATCTGCAAATCTTCCTCTAAAGCTTTCTGAGTGCTCTAAGTGAAACAAAACACAAAACAAAAAGAATGTTGCAAAGGCCTAAAATGTTTAAAGGCTTAAGTCATCTATTTC-TACATT--TGTTTGCCTTTGCACTCCATACTTCCTCCTACCCATTGCCCTTTCTTGGCATACTGAAATAACCCAACCCCCCCCCAACTATCAAATTTCAAGTAACCATTCTC-----------TATAGTTCTGATCCCTCC--AGAGATTTCCCATGCAGTT-AGCCCACACAGTTCTCTCCACTCTTAGAACTGTTAATGACTCTTTATTAGATTGAGTTATTCTATTAGTACTTA---------------------------------GATATG-TTTAATCCAATGCTCTTATTAGAAGCATTTT-CAAGGTAGAATTAAGTTTTCTAT--TTGAATCTCTGAGTTATAATACATTTTACTTGTATCCAATAGTATTTGTTAACTGATTATGTGATACACACCATACAATAGTCACTAGTCATTTTTTAAATCATACCATACTTCTTTGCATAGACATTTTAATATCTTCAAGTTCTGATGTTAAATGATCCTTCTTTTCACTTAATTCTTTTAAGTTTTCATCTTGTAATTCTAAAAGATAAAATTATAGATAGGCATTGTTTGGTAG-AAATGGTTATC-AGGGAAACTGATCTCTATAGCAATTACTCCTTTTCCTGTACTAGAAAACAATCCAAAA----AAAGAACAATACACATAT--ACACACTAAATTT-------CATAAGACT
s HiC_scaffold_1 113096632 1660 - 233722169 ACTGGATCAGATGAATCTa-----actcataattttaaaatttgtctgcATATTTATTCTTCAATAAAGAACTCAGTTTATTCTTCAATAAAGAATACGTATGATTAATGCAGCTACAAAAGCTGgcttttcctccttcttcatGCACAAAAAATGGATAAGAAATACTG-GTAGAACTAGACCCTGATTT-----GAAAAACTACTTTTCTCTTTTACCCTACTAAAATTAACC-----------------CCAAAGTAAGTACCTCAGCTTCACAACAGTTTAATATATATCTCCTTAAAAT-------AGTCATTAATAACAAAATCAGCTTCTAATGCTCAACTTCTAGACAG---CTATTTCAATGAAATGCATATATGTTATACATAATCAACCATGGCCATTAATTTAATAAGCATAGAGTAATATCTACTGTTTTCCAGAATAGTTGCTAAATTTATAAATCAGAAAACAGGTTGCATATCCTAGTAAAATAAATTCCC-ATCCTAGAAATTACGCCTATAAAGGTAATA----------------------------------------------------GTTTCAATAAACATATATCATATCACTACATCAGTCA---AGCTACAG--------------------------------------ATCATAGCATGTATGGGAACTGTTCTAGAGAATACC--------------------TGCTTCTTTATGCTGTTATTTTCCTATAATATCTGCCTACCCAATACAAAGTTCTGAA-------ATGTATTTCAGAAGTA-----------GAAACTATATACATAAAAAAgagcaatgaataaaaatagtaatgaatattagaa-------attttt---tattttcttaaat----aaaaaatattttacctttgtTGTTCTGTTCTTAATAATTCTTCCAAGTTGCAGATAGTAGTTTTAAATtcagtaaccacaaatgaatgaGCAATTTTAGCTTTATTCAGTTCTTCCACTTgagcttctttttcttcagtaaGTTGACATGCTGCTTTTGTTGCTTTCTGAAAATCTTCTTCTAAAACCCTCTGAGTACTCTAAATGaaataaga------acaaaagcaatGACCCAAAGGCCT--------TAAGAAAACAGATCATTCGCTCCATAAACTAGTGCTCCCACCTGCCCTCCA--CTTTGCCCCATCCACCATCCCGCTTAGTCACCCAGGAATA--CCAACGC-------ACTACCTTATCTCAATTTACCTTTATCAAAATCTCATGTATAGTTTCAATTCCTCCTTGAAATTTTCCCATACAACCCAGCCCAAAGAGTTCTTTTAATTCTTAGAACTGTTTTTAGTAATTAACTAGCCTGAATCACTCTGCTGGTACCTAAGTTgttcttgtgttttaaaaaattatacttttgaTGTGCTTTTATCAAATATCTCTAATATAAGCATTTTGTACACTGAGACTGTATCTTCTGTAGTTGAATCTATGGGTCTTG-CACATGGTCGTAGTATTCACTAA-ATTTGTTGACTGATTTCGTGACTTAT----TACA-----CACTAGTCAATTTTTAAATCATACCACACTTATTTGCAAGGACATTTTAATATCTTCTAGTTCAGATGCCAAAAGATTCTTCTTCTCATTTGATTCTTTTAAGTTTTCATCCTGTAATTCTAAAACAGAAAGTTCAATATATGTGGTACTTAATAGAAAATACATACCAAAAGAAATTGCTATTTGTAACAACTACTCTTTTTCC---ATTGTACAACAGTCCAAAACAAGAGAGAATTATGCAAATATTAACACATTAAATATTGGTGACCATAAAACT

a score=24542
s chr3           102920371 664 + 160039680 TCTCCAAGTGATTCAATTATGCCCTCCTTCAACTGATCCAAACAAAGTGTAAGAGAAAAGCAATAGAAAGCATCATTAAAAA-TTGTGACAAAACTCAAAAATT----TAGAAGAAAAAGAAAACATAA-GTCACACTCTCATATTTTTATATGTATTCTTACTTGTTTTTTCCTCTAATTGATTAGCTTTATCTCTGGATTCCTCTAACAGAAATGTTAAATCTTTCATTTTATTTTCTTTCTCAGCACTTTGGATCAACAGTTCTGATACCtaaaataaa-----tttaaaaaaaaaaCATTGTAGATGGAAAAAGTTAAAATTAGCACCTTAGCATTTATTATCACCtataattatatatacttattttatatgttttaaataG-TGTGTATATCATTTAATGCATGCTTATAAAATAAATATTT-------------------------ATTGAATGAATGAGTAAACCTGGATACTATATTCAATATTGAACTACTCATTTCAAACTTTTAAAGAGAA-AGTACATAATAAAAATTAATTCACTCAATAAATATTA-TGAGCACCAGAAATTGTTAACGTTGAATATACAGAAATGAGAAAACTCACCTTTAAGAAACTTAGCATTCACA--------CAAACAACTACACCTGAGCCTTATCATCAGTAATAGAACAAAAATGTTATCAAAATCAGGAAAGAAGC
s HiC_scaffold_1 113100237 675 - 233722169 TCCCCTAGTGATTTGATTATGTCCTC-TTCAACCAATCCAATCTAGGCT-----GAGGATTACTAGCAAGTATTACAACAAACTTACAATGAAAGCCAAAATTTAGAGCATAACAAGAAAAAGACATGACAttacattttc------ttatataaattcTTACTTGTCTTTTCCTCTAAGTGATTAACTTTATCTCTGGATTCTTCTAGCAGAAATATTAactccttcattttattttctttctcagtactTTGGATCAACAGTAGTGATacctaaaataaagtttttttaaagca---------cagatataaaaagttaaatatggcACCTTAGCACTTATCAACTACTATTAGTTTACATGCT-----------TTTCAGATAGCTATTCTTGGCATTTAACACATGATTATATAATAATCATGTATTATGTGTTACATAATAATCAGGcattaaatgaatgaacaagCTAGTATTATATATCCAATATTACACTAGGTCTTTCAAGTTATTGCTGAGAAGATTACATAAT-GAggtttattcattcaataaaagtTGCTGAGCACCAAAAACCATAAGTTTTGGGTATACAAAGATGAGGGAATTTACCTTCAAGAAACTCTGCACTTAGACTGGAAGGCACACAACTACACCAGAAA---AGTATTAGTAGCAGGACAAAAATGtcacaggaaacagaaaaggaac

a score=45034
s chr3           102921747 2321 + 160039680 CTAAAATTGATATTCTTGCAAACATCAGAGAATATAGACTTACCATTTACAAGTCTTCTACTATGTGATATT--AATAGAAAGAAGCAACAGAATTTTTTAGTTTCATTAGTGTTAAAGAGAGTTAATTTCAAAATAAACTGCTAAATGTGAAATGAGTTGTTAATGATTATCTT-TATTAGGTTT-TTTAAATAAAATTTCTCATA-----------TTTTTTCAGCAATGTAAAATGATATAAACATTGTAAATTCATTAATTCAATACTCAGGGCTAACCTTCCAATGAGTGTCTAATGGAATCA-TGAAAATAAATTTGACTAAGCAAAAAGCTAAAGATATATATATAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATCTTTAGCTTTATATATAAGCTTTTTATATAAATTACTCATATGTCTGCAAAAACAA--TGCTTTTGATATAGTAGGTATTTTATGAGTTAACAAATGTAAAGAATATAGCATTA-------------------ATCTCAgtg--------------------atggatat--------gatatactaactaacctaataggaacactactcaatatagacataaaccaaaacatcacattgtacctcataaatatatataaac------------attatTAA-------------TTTTAAAAGAATAGAAATAGTGAGTTATTTTTTAAAA--CCTGATTTTCCTTGTTGTTTACTTCCTTCTGATATTCTTCTTCAAGATGTTGGATTTTTTCATGATCTTCCTTTACTTTAAAAAAGAATAAATAAACCTTGTCTTAACAT---AATTGCATAGCTTTTTCATTGCCAACTAAATT---TAAATATTTCATTTTTCTCAAAGTTATACCTCACAAGTTTCTAGTACACTAAAACTTGTATTTTCTTG---TTGCCAATTCTTTTTAATAAAAT--AGTGACTGTATACACTATCAAACTTATAACTTAAAATCCTACA------GCTCTTATAACAGTACTTACTT------------ATGTAAAATAACAAACCTTAGATATTTATA----CCTTAA------TAATTTACCAAGAAATACAAAAGGTAAAACTATGCCTCTAAAAATT--AATATAAGCCATAATAAATTTTGTTTTATAGATAAAGTAGTTTCAAAACCAAAAGAAAATGT-AACAAGTATTAATTCCCTACCAC---CAATAAGATTTTGAGGGGCTTTCAGAAGCAAAGATAATATGAAATATACAATAGTTGAGTGTATCAGATTAAAGAGACACAAATATTAACAAAAATC--TAAAAATAAAAGTAGCAGAGAAGCAACATGAAAATATAAATAGGAATCCTACACTTAAAATGCATTTCCAGTCTGGCATTCTCAGCTTGCACACGAAGTTCCTCAAAAGCTAGTATCATTTTCTAGAATACAAAATTTAACTTTTAAAATGAGACTTTTTAAATACTTTTTAAACT-TTGAAAATATTAGTAAATTTTACCTCATAATCTTTAGA-TATAAATTAATACACCTTTGAAAAATGAA---ACCACTGTAA--CAATAATTTACTAAAAAAATATAAGGTGTGCCTATAATGAGGCCAATATGA-------TACCTTTCAGCCAGAGTTTGATCCTCGGAATCTATATAGTACAAATAAAAAACCATCTCCAATCTCTATATGCACACTGTGGCAGACACAACCACACACATACATACAAACtat---atttttaatattttatatatttaaatatatatGCATGTAATTATGACAGAATGCCTAACATCACATAATACTGCACAACAGCAAAGTGAATACTGTCACTCCATTATCTTAATAACACATTTTAACATACAATAATCCCCTGCCACAATCCATAAGATTCTAAAGGGGTAACAAAAACAAATTAATAGCATCAAAACTATCATTTTAGACTCTTTTGTGCTTATTAAATTTCTTTCTTCACCACTAATGAGGCAGT-------CCCATAAAACTTCAAATTTGTATTTGTA-TTACCTGATAAAATGCATTTACTCAGCATTCGATAAATCTTGCTTTGTAAAATCAAATTATttcattcattcattc---attcatccaCTAAATATTACTGAGTACCTATTACTGTGTCGGAACTTATTTTAG--------GATATAACACAAAG--CCCACTGTACTAGAAATGTGACATTGAATAT-AAGAAAATA-------ATGTGCATATAT--------ATATAAAATAAGCTTATATATCACATAACTGTAATATAGTTTTAAATGTTCTTCATAAAAGTTAAATGAAATAGAG------AATAACTGAATAAAGATGTTTAGATTAATAGTATAGTTAAGAG----------GGGAAAATGTTCATAAGCATACATAAGAGTGTGAACACAAAAATTCTGGGGGGAAAAAGTATTAAAATCAGAA------AGTATTTCATAAAGCAAGAAACAGAAAAGG
s HiC_scaffold_1 113103986 2288 - 233722169 CTGAAATTGCCATTCCTACAAATGTCAAAGGATACAAA-TAGTCACTTTCAAGATTTCcattatgtgatatttaaaaataaagaaatatttcaattttct---ttctttggtatgtCATAGTAT--ATTTCAACACAAACTACAAAATATAGGTTGA-CGGTCATTGATTACATTGTATTAGATTTGTCTAAACaaaatttctcataaaatataatcatttttacaGCAATGAAAACAGACATAAATACTGTG---TCATTGATTAAAAACCAAGCATTCATT---------GTATATATCTGAGTCACTGAAAATTAATTTGGACATG-AAACTGCTGAATATTTGGAtgca-----------------------------------------atattaaaattatttcagaaacatGTCATGCA------------GTCAACAAATACAAGCTTCTTTTGAAATTATAAGTACTT-aggaattagaaaa---aaagaatacaatatcACATAACTCATAATAGGAGAATTTCAATGTATACACTATAAAAACCTTTATAAGTTTAGGTAGTAGATAGACTAACTATCCTCCACTGATCACTGCCCAATGTGTACATGAATCAAAATATCATGCTGTAcctcataaatacatacaaatttgtgatcaaaaacttttaaaagttaactaatatttaaagaaaatataaatagc----tgtttttaaaaaaacctgattTTCCTTGTCATTTACTTCTTTCTTGTATTCTTCTTCAAGGTGCTGTATTTTTTCACAATCTTCctttacttcaaaaataaa-aaatatatcatgTCTTAACATGTTAATTGTATAGTTTTTTaat-acaaacaaaattatttcattaccTCATTTATCTCAA-------------------------CACTATAActgttattttcctaattttcctAATTCTGTTTAGTGAAATTTAGTAATT----------TCAAAGTTATTACTTAAAATTCTACATTCAGCACACacataaaatttcattctttgcaGCACATTAATCTACAATAAAATGTTAGAGAtatatataattatcttaacACATATATTTtacaaggaaatataaaaa-ccaagttatacatttaaaaaattaagtatgaACCATAA---GTTTCACGGCATGAAAAATGTAGATCTAAAgccaaaagttatttttaatatatattaattcccAGCTATATTTCACAAGATTTAGAaaga-tttaagaaacaaacagaattggAAATA-------ATTGAG-GCATCTAACTGAAGGGATAAAAACATTAACAgaatctaataaaaattaaaatcccaaaagagtaatataaaaat-taaatgagattccTACACTTAAAATGCATTTCCAGTCTGGAATTCTCAGCTTGCACACGAAGTTCCTCAAAAGCTACTATCATTTTCTGGAATACAAAGTTTA------AGAATCA---TTCTTAGGTTTCTTGTAATTTGTTAAAAATTGTTGAACATTTAATTT----GTCTTCAAAGCATAACACAAAGTATGTTACAAAAGAGAACATACGATTTTCactcaaatattta-tgaaattttacaATCTATATCTAAGAAAATGGCATTACTAGATTAAGTACCTTTC-ttcaaaacttga-------------------------aaatattaacATGTAATCACTAGATACACA-TGAAAATCATACAACCATGAATA---ATGAAAACTCTATAATTTCAAACAAGTGATTTAGTAAAAC---------TGT-ATTA----AGAATGCCT---ATAACATTAGTTTCCTAGATATGAAAGGTACtataatcattttat-------ataaagCATT----AGTAAAATAAT----TGCTGGTATTTTGTGTATTC-----ACTTAaca---------caataaaatacaatatgtaatttttcatttatttgcactgacttaaattttctctttcttactaCTAAAGTAATGTTTCCCTCTATAAGAATCCAAAAGTctgctttcatttatttgatgGCATGTGttcactcaaaattcaataaatCCTGCTTTGTAAAATCAGATTCATTCACGTATTCACTCTTTATACATTTACTGAGTATTGCCTA-----------TGTATCAGCAACTATTTTAGGCacttaagatataaaacaaagtCTCTAACCTGTTGAAACTTTTATATTACAGATCAAGAACACACAAGTTTGTGTCCACACATAATCATGCACAAACAAGACgtatatgtattaaataaatgTCATGTAGTTTTAAATGCTCTTCAAAAAAGTTAAATGAGATGAAGATAAACAATAATTgaataaagacatttaaattaATAGTA-AGATAGGAAACTAAAAAACATGATAAAGTTTATAAGTTTAtaagaga-----aatatgaaaa---------ggaaaagtgaCTACAGCAGAAGAGCAGAGGGGTGAATAATACATGAGATAACAAAGG

a score=12826
s chr3           102925020 384 + 160039680 AAAACATAAGTATTCAAAGTTTAGAAACTTAATTTTACTGGTGATTCAACCATGCATCaataaataattttatttattataatttataGCAATTGCAGTTGACAAAAACCTTTGTAGCTATCACTCTTTCTGCTTAGAAATTCTTTTCCTTAAAATAATCATATTTTCACTAACACTTACCTCAATGTTGCTATTTAGATCCACATAAACTTGTCTGGTTTCTTCCCGCTCATATTCATCTGTAATTATTTAAAAACTTCAAAAGTAAATTTT-----AAAATATAACATCAACAAGACAATACTTATAATATCCCCAAAAAACATAAAGACATTTAAAATTCTGT--------AGG------TATATAATTCAGTTCTGAGTTTCTAAAAATAACATCAGAA
s HiC_scaffold_1 113106429 369 - 233722169 AAAATATTAATACTCATAATGTA-AAACTGAATTTTATTGAT-------TCATATATCAACAAAAAGTAATAATC-------TTTTTAGGAAGAACAGTTGTCTACA-TCTTTGTATTCATCAGCCTACTT---TACGAATTCcttgatttaaaatattcagatattCACTAATACTTACCTCTACGCTATTATTTAGATCCATGTGAACTTGTCTGGTTTCTTCCCGTTCATATTCATcta---------------ttcaaaatgaattttttaaaaaaattatgagtcCAACAAAACAATACTCAAAAtatgtcagaaaaaaaaacaaggattttAAATTCTATGTTAATGAAGGCACCTATATATAATTCAGTTCTAAGTCTTTTGAAATAGTATCAAAA

a score=10306
s chr3           102927711 443 + 160039680 TACTATTTCAATTTCCTGCTTAAAAATGA----AGACATACACAATTTATCTGAAGCACGCACGGTATCAAGATAATAAACATCACTGTATTCTACTTCCACATCTTGCTCCATTGGAAAGTTTTCAGGTGCAGGAACATAC----AGCTATCATAACCTATGGTAACAATGCCTTCTTCTAGAATACCT-CTGAAGGACTTGCTTCAGGCTCTTTTAAAGCTAACTTTATTTAATATGAAG-GCA----CATTTTTAAATAGAAACCTAATAGTCTAGAAATTTTAAAAAGCAGTAATGCTTGCTTATTAT-----TCAAATATTATATAACTAATA------TATGTGATATACTTTTATACAA-CTAGCAAT-CAGACTTGTTTATAGCAACATTACTACAAATTACTG---------TCTACAGTGTTA-CAAACAATTCATTGCTAGATGAAAA----TTTTCAACTCT-TTATATTTTT
s HiC_scaffold_1 113119681 469 - 233722169 TACACCTTAACTTTTTTGTTCAAAACTAAGATGAAACATGCATATGTGAT---AAGCCTACACAGGATCAAGATTATGAATATCACTGTCTTACACTTCCACATCTTG-TCCTCCTAAAGGTCTTCAGAAGCAATAACACACATAGAACTGTCAT---CTATAATAACAATGCCTT-TTCTAGGTTGCCTCCTGAAAAACTTGCCTGAGGCTGTTTTACAATTCATTCT-TTAAGTAGAAAGTGCATATTCATTATTGATtaga-----agtaaagaaaataatacataaagcAGGAA--CATAGTTGTTATCATCATCAGGTATTGTGTACTGAACATAATTTTATGTGCCATACTTTCACTCAACCCGGCAGTGCAGGTTAATTTACACCAAAATTACCACAAATACATGAGTAAAGCATCTGCTGTATTATCAAACATTATATCATTAGGTGAGAAAAATCTTTCAGCTCCATTATAATCTT

a score=37210
s chr3           102931558 3366 + 160039680 TATAACACAAAAAAGTACCCAACAAATAA--AAGTTATTTTAATAAATTTGGAAGTAAAATT------ACTACTTACTCCTTTATTAAATCTTTATTTTCTTGAATTTCTTCTTCTAATTTCAAGCTTACTTTTTCATTTTCAAACTAATTTATAAAATAGAAAA-AGTTAATTACATTTCATTTAAAAATTAGTGAGCATAGAATGTAATCATTAAGCCAGTTTTCTTTACTAGCATGTTATTACATAAATTCTATAAAATTATTTTCTTTCTGCATAAAAGGAAAATTTTTGTTA---------------------------------------------------------------------------------------------------GAGTTTATGAATTGTCCATAAAAATATGACACTCcttgggaggtggaggcatg---aacatcaggagtctggggccagcctgagctacacaagactaaatcccatgtcaagaaaGGGAAAGGGAGTAcaagatggctcagccagttaagacatatgctatcatccctggcaatctgagttcagtactcagaacctacatgatagaggcataagattgaatcctagaagttgtcttctgacctaaacacacacacacacactcatacaTTAAATAATATAAAAAGGGAGGGACGAACCTTTCACTTTCACCAGCTTAAAATGTGCTGAATGACCAGTAAAATCATTCAATACTATTTAGAGAATATTATTTCTAATAATATTGAAGTGTATTAGCTGCTTGTACTTTGACTTTTTC-------TCATTCTATGCTATAA-------CTAAACAGTTTCA----------TAAATACATTCTGATATATATCAT----ATCAAATTAAACATCAATAATAGGACTTAATAAAATTTTAAACTCTTTTTTTAATGAATGTGACTAAATTTGCCATTATCTAATTA-TTTCCTTAATC-ATCTTAG----TGGAA-CTTGTC--CTGTATTCATTCCTAAATCTGACCTGTAACTTTTATTAGTGAAATTTCAAAAAGCCTTGTTC-TCAAAAATATCTGCCACATGAATGCAATTTAATTTGAATTCTATTTCCAACAGTATTGTGCTAATATTTATTGCCATATTTTTATCTTTTTTCTTTTATTTTTTATTCAAATAGTATT-TATTTGCCATATTTATAATCCAAAACACCATTATACCTGAAGTTCCTGAATGGCTTTTCGCTGGGCTTCAATTATCTTTCTGTTTTCTTGCAACTTATTTTCTTTCTGCTTCAGTTCAGATTCTATGCTCACTTTCCACTTTTTTATCTTTTCAGCCTCTTTATACAGCTTTGAATACAGTCTGCTCATTGGCTCTGAATTCTACTTAAATGGATTTCCAAAAGTTAA-TTGTCTAAATTTTAA----TATAA-CCAACAATAGTTACCTACCACATATGCATATATACTAATGGTGACAAACTGTCTATTCAATTTATATT---GTAGCAAAATTAA--------------------------------------------------CTTTCATAGT------------------ATCAAGACATCATAT-----------------------------------------------------------------------------------------------------GCTATTTCACCAAAATCACTGAC---------------------------TAAAATCAA--GACTGAAAAATGCTGAA---GTTA-----ATTTAATTCAGTAAGAGAATATGACTCAATAACAGTTAAAATACATCACTCCACAGGAAA--TACATAAAAGTTAACTATTGTATTAAAGCATTTTGTTTAGAGAAATCATTTGAGGATTAAGAGTAT---ATTAAGAATATGACAAGAA-AGTAGTAAATAAAATACGTAATTTTCAATGAGCCTGAGGT----TTTAGAGTTCTTGACTTTTTTTTATTCATTATCATATTATAAATGCCAGAGGAACTTGGGTTTGCtt-tttatattggagctggggag-----------------ctaactcatggcatctcacatactaaacaaataacataactctaata-tgaagctatactccaaatcATATTTT-----------AAAAATAAACTGATATTTGCTTGCATTTAACCTGTTATCAAAATAC-AGACTGGTTCCAAATTTTTTTATTCTGTGACACTATTAACCCTTGCAATAGGCATATAGCAC-TTATCAGGCCCCGAAATTTCCCTTGATTTATAAGATGTG-----CTGTA------AGAACGACTCTTATAATTCA----AAAAATATGCCATAATCTACAAATAAATTTCTTGTACAATAAAGCAGCCAAATGgctgcatatgtagcagaggatggcctaatcagtcatcaatgggaggagacacccttggtcctgtgaaggctctgatgccccagtatagggaaatgccagggccaggaagggggagtgggtaggttggggagcaggaggagggggaaggggataggggatttttggaggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatctaataaaaaaaCCACAACCAAATGACAATTTTACCTGTCAAAAGATTATTTTTGTAAAATGCTGACCTTTCCACATA-TCTCTCTACTCTTCTAGttttaattttttttatttaaaatttaa----tttCCCCAAAAGATTTGTTTTCTTTT---ACCTAGGAAAATACAACTGTTTAGCATTTCAAATACTTTAAGAGGAAAAAAATATCTGGAATACAGATACAACTTTGTTGTAGAACAGTTGCCACTTAAAGTGCATGAGGCTCTGATTTAGTCCCCAGAGCCACTAAAAGAAAAGTCTTC-AAAGAAAATATTTTAAAACATTAACTGAATATGAATACTTTGAGAACTTAAAAATGTATA---TTCAAATAATAAATGAA-------ATTCCAGAAATAAGAAGGAAATATCTGACCTCAAAATCAGAGTCATTTACTCCTTCCTGATAGTGACAACTGCCAGAATTAGCAACCTAAAAAAAAA-------------AAAAAAAAACTGTAAGATTATATATTTCAAGCTAATGACAGTTAAATACACCAGACTA------TGATTAGCAAAATGGCTCC-------ATGAGTAACAA-----TGATGGCCACAATGAGAACCTGATTTGAGCCCAG-------ATTTA--caagtt-----gtagtatgacctccacacatatatcatggtatgtgtgac----------------------------------------actcacatacatacaAATATACATAAGCACACATATACACAAATGTAATA-AGAATTAAATTACATAAAACTACTAATCCTACAACTACCAATTTTT---------TCTTCAAATAATTCAATCTC----TAATTACAATCTCTAAT------------------------------------AATTTAATTC---------------------------------TTAT-----------------------TACACTCTT----ACTAACCTGTTCGAGCATGGGCAAAATACTAAGTTTTTGAAAAGCAGGATCTGTGAAATAAGA----------------AAATGTCATTAAATATGAGAAC--ATCACTTTATATTATTTTACCTA-ACTGAATGTCAAGAGTATTAATGTAATACTTGTGTTGT--ATAACTGGCAATGTATATAACAAAATGTTTCTATGAAAATTTACA---TATTTGTCCAAACC-TACCTTTATCAATGTTTTCCCGA---CTGGA---------CATTGTAAATGGAACACCAAAATCACCTTCTGTACATTTGTTGGCAGTCTAGAAATACAAAGAGGTTCTTTAAATATTCTGCTCAATACCT
s HiC_scaffold_1 113122450 3345 - 233722169 TATAACACAAAAA-Gtagttaataattttttaaactgttttaataa-tttggaa--aaaattttctatattacttactcttttattaattctttattttcttgaatttctgcATCTAATTTCAAACttactctttcattttcaaactaatttataaaacaaaagacaGTTCATCACTTTTTGCTtagtaaataa-----acaaaagtatATCATTAAAC--ATCTTCTTTAATAACATACCAT--AGTAGCTtatagattcttttttctttcttgtacaaaagaaattttttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagcacacctgtaatccac----------cactct---ggagattgaggcagggggatcgttgtgaattcgagaccagcctggattaca-----------------------------aagtgagc-------------------------------------------caacctgaactgcttagtgagaccttgc----------------------ttcaagaaa---------gaccaaaaaata------------------------------------------------------------------aaaaagcactcaA----CAATATACTAAtgcaatattattt------tctttttt---------ttgaagcaAATCTG----------TCTGATTttctcaacatttttattttgtgctatAAATCAAAGCTAAAAAGCTTCAAAGTTTTACATATAAACATTCTAATAAAGGCAATTTAGATCAAATAAAATG---GTAATAAGAATTAGTAAAAATTTACA-TCATCAATAAATCAGCATCATTAAATCAGGCCTTATCTaaataatttccctaatttatatTATGCTTTGTAATCTTGTTTTCTGTGCTCATTACTCAAGTTAAACTGCAATTAGTAtcaatgaaactttaaaaaccaCTATCCCTCAAAAGTTCCCATTATAAAAA--CAAGTTAAC-----------------------------ACTATTTAT---------------------------------GTTGAAATAATATTCTATTTAC------TATTATTCAAAATTTCATTATACCTGCAGCTCCTTAATAGCTTTGCGTAGTGCTTCAatgatctttctattttcttgcaacttattttccttctgcttcagttCAGATTCTACAGTCACTTTCCACTTTTTAATCTTCTCAGCTTCCTTATATAGCTTTGAGTACATTCTGCTCATGGGCTCTGAATTCTGTTAAAACATCCTTGCAAATATCAGTTTATCAAAATATCCAAAATTATAACCCAACTACAGCTTCC-------CATGTACACATACTAATGGCAACCAACTGTCTCTTCAATTTACACTCTAATACCAAAATAAAAGCTACCTTAACTCTTTCAAAttgctaaggcagaaagatctcaaTGCCCTCTTTCACAACAGTTCAGTCACCActcaaattaagaaattaaatcaaAGACAAATTTTCATTAGTCAGAAGAGAAAAAACGTAATTCAACCTTGGATAAATTAGAATTCTAAGCAAAGTAAAGTTAAATTACTAAAGCAATACCAGTTATTTCACTAAAATTACTGACCACTTTATTAAATTATACTTTGgtgaataaaattaaatgactGAAATGTACTTAATACGTTAGAAACATCTTAGACAAT--GAGACTCTGGCTGggtaaaatctaaaataaatcacTCTCCAAAAAAACtttataaatcttaaaaatagtcttgaaatgttttaattaaaattctaagGTTAACCTCAagaacatgaaattttaaaaatgacaaaaataacagTGAATATAAGAAACAACCTTCATTGAGCTTGAAGTTTTGTTTAGATTTCTAG---TCATTTTACTTA-CATCATACTGTAAAGGCCAGAGgaggttttgtgtgtgtatgtgtgtgtgcgtttgGGAGAGTTCAGTGTTAAatatcaaacccaggaccttttgcatgctaggcaagt------gctctactactaaaGCTCCGCCCT---TcaggcctttaaaaaaaaaaaaaaaaaaactgatttctgCTTGCTAAGAGCTGTTTTTCAAAATACTTAActggttccttatttttaaattctgatacaatAATCACA---GCAATAAACATATAGTACTTTATAAGGCTACTGaattttccttcatttaaaaGATATTAATACCTGTACCTACTATGAATATTTTTGTAACAAACATCAAAGGTACAGTATATCCTACAAATG----CCTTACACAATAAATCTGCCAAATG--------------------------ATTCATCTATTAATTCAAAGA-------TTGGCCT-----------------------------------------------------------------------------------------------GATTCTCAG---------------------------------------------------------------------------------------------------------------------CCTTTTTACATACTGTATCCACTGCCTTATTCTTAATttatatgatttaaaattaaactgttttttttaaaaa---tgactactTTTATAACTCCGGAAAATACATAAGCCTAGTATTTCAgtgacattaaaagaaaaa----------------------------------------------------------------------------caaagc-----aaaaataagcctttaaaagaatgtatttgaaaAC--------AATATTAATCCTTTTGTAACTTCAAAACCCataaataataaatcataaataaatgatCGTACTCCAGTTATACAA-------ATCTGACCTCAAAATCCGAGTCTCTTAGTCCTTCCTGATAGTGGCAACTGCCAGAATTATCAACctaaaaaatgagtatttttctattaaaaaataagtttgaga------GTTCACAAATAATTGCAATTAAATACACAAGACTAGTAATTCAATAACCagagtttttcttcttcaaataagAGATCAATACCTGCTAATGAAACAGAAATCCTGACTTAACTGCAGCCACTTTGTTCAATAAAGCTGGCAGGCATTCTGTTCTCCACCACTGAATTCAGCTAAATATGATTTATTATCGAATTCAAACTTCTGTGAATGTGCTAAAAACAACTTGGTTACATGTAACTACGC-TCAGCA-ACATACAC-CTATTGTATCATAGCCTTAAATC---TAAGGCTTATCGCTCT----CTTCTAACTTTTGTTTGCCACCCTATAAAAAAGACAAGCTCTCTGTAATCAACACCTCAGATTTAGGAGATTACTCCTCTGGGGCCTGCTAGTgtcaaaatttcctttcttcttttgagcTCCTGGCTACTACTGACGCAATTATCTTGAAACACTAGAACTGTATCGTACACTCTGCTTAACTGACCTGCTCAAGCATAGGCAAACAGTTAACATTTCGTAAAGCAGGATCTGCAAGATAAAAGCagtattaaaaagagaaacagtatTAAATATGCCAACATATTAGTTTTGTTAATTATGCATAGGTTTAATATCAAGACTAT-----CAATACATAGATTGCTAATAACTGgcaatatttataataaaatgattcTGTGTAAACCAATATGTTATTTTTCAGGACCTTACCTGAATCAAGGTTTTCCCCATTTCTGGAGAGATGAGTTACTGCAAATGGAAAACCAAACTCATCTTCAATACATTTGTTGaacctctagaaaaagaaaagacgtTCTTAAATATACT--TTAACATCT

a score=5217
s chr3           102935500 181 + 160039680 CCCGGGCCCGGGCACTGTC--TCCGAAGCGCCCACGCAAGCTGACCTTGAAGTAGTTGGAGTCTCCTCCCGCCGTCTGCGGTTTCACGGCG---GACACTTGACTGCTGCTCAGCCTCGGCGGGACGAACAGTGTGAAGGGCTTTTGCTTCTCCA--TGCTGCCTCCTGGGC--------------CTCGGGGGAAGGGAAG
s HiC_scaffold_1 113126654 193 - 233722169 CCCGAAGCCAAGCGTGGTCACGCCCCGGCCCTCCCGCGAGTCTACCTGGAGGAAGTCGG---------CCGCGCTCTGTGGCTTCCCCGCCTGCGACCCCTGGCTGCTGCTTAGCCGCGGCGGCAGGAACAGCGCCAAGGGCTTCTGCTTCTCCATCTTCTCCTTCCCGGATGGAACTCTCTATTGCCCGGGGAGGGAGAAG

a score=31310
s chr3           102940723 979 + 160039680 GTTCCACAAACCCTGATGAGCCTTTTGGATCTCCATTTTAAGGTGGTGTGTGATAACTCAATGATTTTGAGTTATCACATTTTTTTCAAATCATTCATCCAATTTTGATTTTGAAATTTTAAGGCAAGTCTCACCACTGTAAATTTTCAGGAAAATGAGTGCAGATCCCATTTCTCAGAGAATAACATCACCAACCTGGGGTCCTTTGTTTTCCACATGCGAAGGATTTCAGAGTGGCTGTGACTCAGAGTTCTCAGTTCAGTAAGCCTCCCTATGAGGTGGGCGAAATGCTGTGGGTCTTCTGGATGGTACATTTTTGAAAACTTAAACAAAAGTTGCAGGACTGGTTCTTGTAGGTTTTCTATATGCTGCTTATTTTTAAGGCATGGACGATCTGAAAAACATCA---TATTTATCTTAATAATGATTCAAAGTGGTGGGAATAATGAATGCACTTAAAACAATG-AGTTATT----AACAGAGTTATAAAATCAT------------------AAGTACTTG-CAGAACCCTAATACACATTAGGTTTTCTAActaaattctctttgttcatgactttacttaatcttcactatattctattgagctacattctatttttatcacatttttttcagattagctccctgaaatgtagggagttaagtaatttccataaagtcacatgggaagaaagGGATCGGTGAGTAAGGTTGGGGATATAACAGC-CATAAACGCTTGCCTGAAACTTTAAATAGTAGTAAGTAACCTCTCTACAGTCAACAG-AGGTAAAGCGTGAGACTTCTTGGGTTCCTACGTAAGAAAT----GAGCTAACCAGGAAGTTCCGAAGGCTTAGGCAGCCTTCATTCATCCAGTCGTCTTGCTAACTATACCACAATGAAACTCACAGGCAAGATTGTGTCCCTTTATTGTCCTTATATTCTTAATGTGGAAGAAGTGGAGAGGG--AGAGACTTACACACATCTTCAGAAGTAAAAACAGTctgg
s HiC_scaffold_1 113139137 968 - 233722169 GTTCCACAAAACTTGATGCACACAGATGTTGTCCATTTT-----GGAGTGTTATAACATGCAAGTCTTG------TTCATATTCTTCAAACCAGTCATCCAATTTAGATTTAGAAAATGTAATACAAACCACAACATTCTAAAATTTTAGCAATGTGGATACCCATTCCATTTCCCAGAGAATAAAGCAGTCAATTGGGGATCCTTTGCTTTCCATGTGCTAAGTACATCTGAGTGgttgtga---------ctcagttctgttaacATCCCTATGGGACAGACAAAATGCTGTGGGTCTT-TGCATAATAGATCTTTgaaaatttatacaaaatttgTAAAATGAGTTCTTGTAAGTTCTCCACATGTTGCTTATTTTTAAGGCATGGACAACCTGAAAAACATCATTGTATTTCTCTTAGTAAACATTAGAA--------AATGGTGAATTCATTTAAAACAATGtagtttttaaacaataaaataataaactaatattttttaaaaacataaaaaaaatttgaTGGAACATTAATATATCTCA-GTATACTAAATAATTTGCTTCtgtgcattattttatttaatcatcaTGATATTCTA-TGAAAGAAGCTCTATGTTTACCA----TTCCTCAGATGAGCTTCTTGAAGCTTAAA----TAATTAATTTCTACAAAATTACACAGAATGGAAAGG-TCAGTAAGTACTTGTCAGAATATAAGAGCATCTAGAGacttaattgaaattttaa--aatagtaagtaATTTCTCTGAGGTCAACAGTAAATAAAAGGCCAAG---CTTAAGTCCTTAGATACAACATTTAAGTGTCAACCAAGAACTTTTCAATGGTT-GGAAGCTTTAATTCATCCAGCACTTGTGCTGGAGATACAGCAATGAACAATAGAGACAGAATTTCCTGCCCTCATTAAGTTTTTATTCTGGATCAGAAAGGAgtggagaaggaaagagacatatatacatttttaaagataaaaatgttctgg

a score=5821
s chr3           102944093 271 + 160039680 TCCTTGTTTTAAAAGACC-CACCAAGAAGGATAAAGGATGATGGCCACAGGCGTTATCAGTCCCACTCCTGAGAGATGGGGAAAGCCTCACACAGCCAGAACACCAGGGCTCTAAGGT-ACTGCACCATCCAGAATTTGTAGCTTAATTCCCTACACTGAACTGAAAGAAAGAAGAGTTTTATGGTCCAACCAGAGTGACCTGTCCCTAGGTAACAGTCTGAGCTGATTTTCCAAATATTCAGATTCAGATGATAGCCAACACTGCTGTCCCT
s HiC_scaffold_1  70476541 263 - 233722169 ttttcattttaaaaggtcaTACTGAAAATGGTCAAAGAGGATCCCTGTGGACATTT---GTCCACCATCTAGGAAGTCGTGAAATCTTCAAGCAGCCAGG---TTTGGG----AAGATCACTTCATGGTCCAGAATTTATAGTCTAAATGCCTCCGTGTAAGAGGAAGTAGTCGAACTTCTATGGCCCAACAAGGGACAGCTGTCCTGTGAAGACAGTTCTAGATGGGTTCCTGATTATTCAATTTCCCTTGATAGTGACCACTTCTGTTCCT

a score=6001
s chr3           102944435 355 + 160039680 AAAGTGGACAATATAATGGAGCTGCTCTGGAGCCTATGTGATTCAACTTCAGATGCACATACCTAGTGAACATTCACGAACCCTGATATCACAGCAAGTTAGAATATAAAAGAACACAAACATGGCCGAATCGGTGAAGGACACAGGACAATGGT--CCCCTAGGAAG---ACGTCGCTGGCTTGAGCAATGGGTTACCCATGCTAAGTAACTGTC---TCACTTCAACCTGGGTCCGGTTTGTAACGCATAGT----CAAGAAGACTGTGAAC-----TGACATAAAGAAGCATGAGAAATTCTCCTAACACATCAGACATCTTCACCG-TGCTTCAAAATTCCACTGAAGGGCTCACAGGAAACAACATAT
s HiC_scaffold_1  70477608 365 - 233722169 AAGGTAAAGAGTAAAATCTAAATGCACTGAATTATATGCGATTCAAGTTTCAATGAAAGTGCCTGATTATTGTTCAGAAACCCTGATGCCACAGAAAGTTAGAAGACAAACAAAGTCACAGAAGTCAGGCTGCAGGACGGGTACAGGGCAGCCGTGACCCCTAGCAAACTTATGGGGCTGGTT----CTGCAGGTTAACAGC----AGAGACAGTCAATTCATTCTAGGCTGAAGCCACATAGTGCTGCAGGGTTCTGCTAGATAGGTACGAACCTGAGTCAGCTCGAAAAGTGTTAGGAGCCCTCCTAACGCGCCTAAAACCTTTATCATTGCGTCAACACTCAGTCCAAGGGGTCACCAGAAGCAAGAAAT

a score=18221
s chr3           102949039  850 + 160039680 TACCTGGGAGTCCCTTGGTAAACTTCATTAGCCCTTGTATGTGGAGGACTGATACCTCTGAGAGTCTCAGAAAACTTAGTTCGGGGTTGGAACCCTCCTGCAGCTGGTCCataaaaaaataaataaataaaaatGATTCATAGTATGTCTTTCTGATAATTACTAAGGTGTT----TCTTTTTTACTGTTCTTGCTATCATTTCCTAATATCATTCATTACAAGTTATTTCTTGCCAGCAATGGATACATACAAGTTTGCTTGTTTCTCCCAAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------GAATCATGGATTTTTGGTGAACAGTCACTATGGTATTCAGAAGCCGATGTTCCTCTTGAGTTAGAGTCATGTTGTCCTGAACCTAT-AAGGAAACAGAGGGCGCCTGTAATGTGTGCTTGTTACAC-----ACTGTTCATAAAGACACAAGAGACTGTATGGAAGAAGCGTCTTGCCCCTTTCCCAGATCTGGTGCTGGATGACACGTGTTTGGTGTCTGCTCCTTCATCTTCCACTTGGATGGCAGGGTACAGGGCAGGCCCGTGCTTGAAGTTCTTGCGAAGTCTCTTCGACTTACACTGGATCTCTGTGAGCAAACCTGTGACATTACAGAATTCACATTAAGTACTTTTGGCTCGGAAAACAACACTGTAGGGTTTGA---TTAAAATGGTCTTCAGTGAGTA------------AATAGTCCTAGATATCTC-------------------TCGTGCATGTCTGCATCTATTAAATTTCCTA--------TTCTGCTTTTCCCTTCATAGACACCTTGTC----------------------------------------TGCTTAA-------------------------------------------AAATAGTTAT----AACAAAGATTAAGAATTAATTTTTCATTTCCAAAT-TATGTTTAGATTTTTACATAAGAGATTTACACATTAGT--TGCATCTTGGAA
s HiC_scaffold_1 113154096 1097 - 233722169 TAGCTAGGATTCCCTTGATAAAATCTATCAGCCCCTTCATGTGTAGGACTGTTGTCTCTGAAAGTTACAAAAAGCTCAGTTTAGGATTGGCATTTTCCTACATTTAgtgcataaaaaga-aataaaataaagattattt--------tcttttaaataactattgaaattttaaagttattttta-------tgcttttattgtataatataaataactacaaattattttttgtcAGAAATAAATACTTACAAATGCTTTTGTTGCCTTTAAaggaataatatatatatatatatatatatatatatttttttttttttttttttttttttttttgtctttttcatttttattggtaccggggatcgaactcacgaccgcctgcttgcaaggcaggtgcttatgccgctgagctaaacccccagcccctgaataatatatttttgaagaGCTGCTACAATGTTACTAGTATGCTGatgttcttcttgacttaattCCATGCTCTCCTGAAAgcataaaaaaaatacagggaaaCTATAATGCATACTAATTGAACAGGATATTGTTAATG-------AAGAAATTGCAC--AAGtaaagtctttccatttttc---------tggtgGATGACACAAATTTGTTAtatgttcctttttcttccacTTTGATGTTAGAATAAAAACTATTCTTAtgcttaaaattcttttaaattctctttgaattgCATTGGATTTCTGTGAGCAAACCTGTGATATGTGA-----------AAATGTTTTTGGCATGGCAAATAACA---taggatttgatttttaaaattgtcat-attgcatatatatgtatgattatAGCCTTGGCTTTTTACAAAGAATCCTTCTATTGGTCATGTATATATGGAGCTGTTAAATTTACAAGcagttctttctccttttccttccacAACTATCTTATCtaccttttggattttttttttttttttgtaactagGCAgttgcttgagccactgagctaaatcaccagcctaTCTTATCTACTGTAAAGCATATAGTTGtccaagacaaaaattaaaaatttattctccATCTCCAAATATAAGTTCAGA-TTTTATATGGGAATTTTGCACATTAATTATATATCTTGGAA

a score=11100
s chr3           102952213 377 + 160039680 CTCTTGGCATTTTCTGCGCATGTACATGTCCATTTCACAGTGACCACCGTTCTTGCAAGAATACACTGCATTCTTGGTAATGCTACGCCGGAAAAAGCCTAACAACAAAGATGGTCAAAGTTTGACATGGATATGTTTAGTTACTTCTCATTTTTATTAACATTTTACCT-----TTATAGAAAGTAATCAAGCTAA-CTAGAGTATTTCAATTAAATAGGGTTTTTTTTATTCCCGACATTTTTTTAAATATACATTTATCTGGAAAGTTAGCTAATTCTATAATTCTTTATAGTTA-GTATAGTTCA-GTTGACATCCTGAGGCTGGGTCTTTCTTTATAACGTCTGGAGATTAAATGGAGTATCATTATCACATTAAGACAA
s HiC_scaffold_1 113165329 360 - 233722169 cttttgACATTTTCTGCACACATAGATGTCCATTTCACAAAGGCCACCATTCTTGCAATTATATACTACATTTTTGACAATGCTACATT-GAAAAAACCTAATAACAAATCTTCT-AGATTTTAACATATGTAT-TTTAGTTg----tcatttttaataatatatgaCTCCATAGTGAAGGTAAGTAAGCAAGTTGACCTAAATTATGtcagtaaaata---ttttcccttaataAGAAAGTTTGGTTAGTAAGTATTTATCTGGGGATTTAATTAATCCT----TTCCTAATTGTTATGTTTATTTGATGTTTATCTCTTGAAAA-----------TTATCACATCTGGAAATTAAATTGAATAGCTATTCCACACTAAGACAA

a score=34045
s chr3           102952849 2362 + 160039680 CTTTTCCTCCTTCGAACCTTATTACACAGTAATACCTGCCATTTCC-----TGCTCTCCCTTCTATGAGTTGTCCCAAAGCCCCACCACTTACTCTCTTGCAGTGGACACTTGAAAGATGGAGTTTCGCCATTTCAGTTCAACGAA-GGAAGAAAAAGCTCAGCTCAGGTTTTCAAAACTGTGCTGGGTTC--TTCAGCTCAGTTTTAACAGTAA-CCCGTCACCGTCAAGAGCAGGCCACCCCTGCCTAACTACTCGCCACAGGACTCTGTCACCTCATATCCTTTGGCTATTCTTTGCCAGTGTTGAGGTTTAAGATT-TACAGGTAAAATTTTACCCTAAAC-------AAACACGTTTATTTGTGTTACATTGACTAAACTGTTTTCTGTT---GTTTGGGTTGTTTTGTTTTGTTTCAGAGggtgctagaatcaaatccaaaagtaggtgctaagtgctctaccactggcctgcattcccatcccGATGTTTATCCATTTCTGGAGTGGTAGACTGTTTCAGAACTGTTATTTATCAGAGAGGCTTCCGCTCTTTACAAATATCATTGCAAACACTGGCCCTTGCTTCCCGACTTTCAGCTTGTTCTCTTTCTATACGAAACACTTTTTAAAATTTATTGACTTAGAATCATAGAAGTCATTTATTTCAAATTTTCTCCAAGTGTATAAATTTTATCAACCACATAAAAAGGTGTCATGGTTTACAGATCTTTACATTGTCATGTTTTGTTCCAGCATCAAATTCTTCTAGAAATAGGGAAAACGTTTGCTTATATGTATCGAGTTTAAAGTAAAGTGTGAAAGTCTTCATCAAAAATGAAGagacagacctggtagtgaatgctcttaatgccagcagtaaggata-caaaggtaggtggatctctgagagttcaaggacagcctggtctaaacagtgagttccaggacagccagggatgcatagagagacc---ttttctcaaaaaaagaagaaagatgaggaggagaagatgaggacgaaggggaagacaagggaggagaaaaaaaaaataaagaaagaaaTGGTccaggcatggtggcccacacctttaatcccagcacctagaaagcagagacaggcaggtatctgtgagttcaaagccaacctgatctccatagtgaggtctaggccagccagggctatacaatgatactctacttcaaaaGAgagagggggggggagggagagagagagagagagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaggaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaaggaaaggaaaagaaaggaaaggaaaggaaagaaaCCAACCTTAAACTTAACATTTTATTCTCCTATCTTTGATCACACAGATTGATCCCTTTAGACATAC-----TTTTTCCTGGTTTTGTTTCTCA---------TGTTTTATAACGATTGCACACGCACGTGCACACACACATACACACGTGTGCGCGTGCGCAGCACTGTCTGTTTGGTTGCGCCTT-ACCCTTACCTTTGCACCCCTCACAAGTAAGTGCATTGTAGTGATATCCTGATGCCTTATCACCGCAGACCATGCAGAGCATGTCATCTTGACCCTTCCAGCGTAAAGAACAAGTTGCTCTGCACCTTTGTGCCCCAGGG-AATTCATCTTCATCATCGTGAACAACCACATAAGTGGACTGACCAGATTCTCGAGCGTCGAGTCCACACCAACTGCCTC--CACTGTACTGTGGATCCAAGCCATGTGTGTTGAAATGACTTTGTAAAGATGGGGACTGTAACGCTGGAGGAAACTGAGCGGTAGAATATTGACAATAGGGTGGTTCTTGGAAATCTGTATCACACAGCTGATAATGGAATTGTTCTGGCAAAATATCTGGTTTTATTAACATAAAAAAGAACAAATCATAAAAGGTCAAAAAAGTTCATAATTG-TTTTAAACCTCAAAATGTTTTATACTCAACAGAAA--GTTAGTTCAACACATCTATTCCATCTCAGGA-CTTGCCGTCCAGCACAATAGGAACACAGTAAATGGAACTAACAATACCTAATAAATGCTATGACCCCAAAGGTGTGCCGAGGTGGGTCAGGAGCCAGAAGAAAGGGCATTAGTTGCTAGCAGTGCATGCACCAACCTAGTCTCTCTCCTTAAGGG--AAACTGACTAACTCCCAGATTTTTAATTG--AGTTTTTCCCTACCTT
s HiC_scaffold_1 113166535 1807 - 233722169 CTTATTCTTCTTC----CATTTCAAACAGTAAAGTTTATCACCTTGGTCGGTGCTCCTCCTT--------------AAAGCCCTATCAT---ATCTGTTTCAGTAGACACTTAAGAGCAGGAGCTTCGTATTTTAGATTCAACAAATGGAATAGAAAGCTTAGTTTGGAATTTTAGAACAATACT----TCAGTTCAACCTAGTTTTAATAGCAAGATCCTGAActtcaagaataaa-----------taaatatttgcctagctattttatttacaaa---------gctaTTCTTTACAAGGGC-GAGTTGTGAGATTCTGACAGTAAAATTTCACTCTGAACCTCTAATAAACCTGTTTATTCATGCTAGGTAGGTGTAATCATTTCCAGGTCCAGTTCCAAAAATTGTGAATGGAGTGGGAGAG-ACAACACTGGAGATCAAAATCAGGC--------CTTTATGGAGGGTTCTTATTTCAAGCCT-ACATCTATAAATTTCT--------AGACTTTTCAAGA-----------TCAAAGATTATTTGAttct--gcaaatcccattgttagTACTG-----------------TTCTACCCATTCACTTTCAATATG------Tcttcaaaa-------aaatagaatcttagaagttatttaatttaaattccttATAATTGCATGAATTATAGCAACCACATAAAAAGGT-------------------------------TAATGTTCAAGC-----------------------------------------------------------------------------------------tggacatggtagtgcacacctgtaatctcagcactgtggaaatctgAGGCAGGGGGGTCG--AAAAGTTCAAGCCCAATTTGGGTGACTTAGTAACT--CAGAAAGACTTGGGGTGGGTGAGGTAACTCAGTGccctacagaaaaaaagaa----------------------------------------gagcaggaaaaagaagaaacaggagcattg-------catggtagtgcatgcctgtaatcccagcactcaggaggctaaggcagat-gttcactgtgagtctgaggccagtctgccctacatagtaaactcaaggctagtctgaaccacataatgagaccctgccttgaaaga---------------------------------------------------------------------------------------------------------------agaaagaagaagaagaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaaagaattata-----------------------------------------------------------------------------------------------------------------------------------cCTAAACC--ACATTTCATTTTCATGTCTATCATCCCACAAATTGATCCCTTTAAACATGTCACGATCCTCTCTGGTTTTGTATCTCACACACCTAATGTTTCCTGACGGTT---------------------------CA-------GTGGGCcctaaaatttcagttttgtgCTAACTTGATCCTTACAGTTACAACCTTCACAAATAAGTGTATTATAATG-------------CTATCACTGCAAACCACACAGA---CTTCTCCCTGTCCTttaattcacaaagaaaaatttGGTATGGACCTTTCCATTCTAGGATAATCCATCTTCCATATCATGTGTGATTACAAAATTGGATTTATTTAATTCATGTGAATCAAATGCACAC----TGCATTATCGCTGTACTGATGATTCAAGTGATAGGAGTTGAAATTACTTTGTAAAGATTGGGACTGCAAAACTGGAGAAAATTGAGCGGTACAATAATGACAATAAGGTGATGCTTGAAAATCAGTGTTGTGCGGCTGGTAATTGGCTTGTTCTGGCAAAATGTCTAGTTTtattaaca-aaaaaagaacaaattataa---gTCAAAATA--TCATAACTGCTTTCaaacttcaaaatgttttatgCTCAACAAACAGGGTTTGTTCAGTATAACCATTATATCTCAGGAGCTTGCTGT-CAGCATGCTGGACATACAGTAAATGAAattattactacc--------------atcccagtgaCATGCA-----GGACTTGAAGGTGGATAAAAGGGAA-TAGCTGTTAATGGCG-ATGTCCCATTTCAGTTTCCAATCTTAAGTGTAGAAATGAGTATTTCCTGGATTTTGGAATGgaaaattttccttatttt

a score=6371
s chr3           102958289 158 + 160039680 caAAGAAAATATTTTATT---TTTATTACATACCATAATACTGTGTGGGTTCAGCGAGGTAGTACCCATCAGACGTAGCAACATAGGTATTTGCCATTCTCTGGTCCAGCTTCTAGTTGTTTCCTTCA-GCAATGCTAAACACTTTCAGAACAAAACCTAAG
s HiC_scaffold_1 113170437 159 - 233722169 CAAAATggctattttattgtatttgttacATACCATAGTGCTGCATGGGTTCAGCAAGGCAATACCCATCAGTTGTA-TGACATATGTATATGCCATTCTTTGGTCCAATTAGCA-CTGCTTCTTTCATTTCACGCTGCACA-TTGCAGAATaaacctgaag

a score=31438
s chr3           102962240 3038 + 160039680 TGGATCTGGAAGGACTCTGTCTTGTTATCTTTCCTAGTGTAAATATTTATTTAAAACAAAATAGCTTAGCTAAAACAGGACCTTTT--ATCAAGATGAGCAACTTGATATGGACAAAATCTGTTTTTCCTTTAATATCTATAACTTACTAAAAAGTGTACTTTTCAAAAATTGTCACTGGTAGGTATTCTGCTAAAAATATGCTTAATTCTACAAATGCTTTTGCATTTCCTTCTCCTTAACCAAAAAATTGGTCTCAAAGATTTTTGTCTGTGTAGAGTTTTAACAGGAAGAAGAAACCCTGACTCTGGAAAACTAGGTGACATAGTGGAGGTTCACACTGTTGAGATCTACTCTTATAGCGTGTATCACCTGAATTCTGAATAAATGGAGTCGATTGCTTCAGAAGAAAAATGTTTTCATTTCCATAGTACCTCTTA--AAAAAAACCATA--TCATTACAAAAAATGGCTTACATGGCAAAGTTATTCTCTGATGCAAAAATTGTaaaaaaaaaaaaataaaataaaataaaaataaaaaaaTAAGACTTTTCATGCTGATGCACCTTTGAGCCAAGGTTCCC-AGTCAAAATTTACCCTAGTCAGAGAAAATCAGGAGAATGTCTTTGAACA---ACAGAAAATAAGGTTTATTAACTCCTCTATGAGAGTTTACTTTAGAATATAGAAGACTCTTGCCAACGTGGACTATTAACCTATAGTTTT-GATAGTAATTTATTGACATATAAAtttttaagatttatttattatatatataagtacactgtcgctgacttcagacacaccagaaaagggtgtcagatctcattatgggtggttgtgagctaccatgtggtttctgggatttgaactcaggacctttggaagaggagtcagtgctcttaaccgctgagcaatctcgctagcccttattgacatataattaactcatgaaactcaaccttaactatagaattcaaaatattcacttctaatacaactgt-catcaccacacaactccagagc-ccctgatgccttcagccctcaaatccagcaggggtcacacctcacc---tcctttccca-aacac-ctgtcatcgtgtctcctcccttttca--acagattcatctagtctagatatttcatgcaaaaagggccataAGGTTGTGCATGTAGTTTTGAAAAATAAAGGGATTTGATTCGTTTTCTCTCAAATAAATTTTATGGATGAATAATGATAGCAAAAGAGGA-AACATGCTAATATTAAAAATACTGAAACTATAAAATTAATACATTCTATATTTCAGG--------AACACAATTTGTATGTATTTCTCTAGT--CTAGTCTTTATATCATCATAA--------CAGTTTCAACAGACGTGTCAGATACAGCATAAGTTTCATGGTGTGTTGGATCTACTTATACTCTTGCCTCTCAGGACAAAGCACATTATCAGTGAGCTCATGATTTAAAAACAGGTTTCACTCAGCAAGTGAGACAGTGAGCATCATCCCTGGATGGATCACATTAACAGGTCAATTGTCAACTGAG-TTCAACTAACACTCCAAAATCCCTCTGAGCTTCTATCGGCAAGAATGAAATTACTTTATAATCTTCTGCAGTCCACACAATTTCTTAT-TTTTAA--GGAAAGTGGTTTT-------CAGGGTTTACCT-CTA------------------AATAACAATCAGCTCACTCATTTTTGCAAAATAAGAACTTGTGGTGGTAGAGGTTAAAGCCCTCAAAAATGTCTTTTTAAC-AACACTGTACAGTTTAGTATACACCCAAAGCAA-----CAATGAAATTAACACTCGTATTTAATTCAGACAGCAGAAGATTTTTAAATTGTCTTATTTTAGAGAAAACAAA-TACTCACAATTGGGTAGTGTTCCTGCAGTCTGCCCTCCTCCTCATGGAATGA---GAAGAGAAATGTAGCAAGTCCGTTGACTTCCCAGCTG-GGCAGAGCAGGCACTTCCCTGCTTATCAGAGGCTGGACAGGGG----ACGTTGCATCCACTTAGGCT------CCAGACACTCTGCAGAGCAGTGCCTCAGCTCTATCTCACAGACAAACTTCCCACACAGTCCTCTCTTGGGTTAAAACA-GGGCAATTACAGGCTGACATAAATCAAAATATAACCGGTCCATCAGGGACTGAGGCCTTTGGGACCTGCAGGTCCCACTCT-CCAGAGCTTCTTACTGTTTAC-TTAACAAATGCTTTGTGTTCTGAATTTTATATTCTTCCACTTTAGCTATAAAACATTGGGTCTCTGCAAACCAGTAAGTAATGTATGCAGAAGTAGGGAGAGCTGTACAGAAAGAACAGGGGTCCACATTGATTGAAAAACCCATTAACATAGGTGCTGGGACAGTTCAATTTG--TTTGTACTG-----------------------TATCTTCTTTTTTCCTACAGAAAAAGAAGTTGCCTCACCAATTAAATGTATGGATAATGGTTTATAAATTAGTACACT----GATCAGTGTATATATT--------ACCCTGTGTTTCCTTCCTCTTCCataaaaaaa--aaatgtaatataaataaataaaCACCAGACTCTAGTGCTTGCTTAGGCTCTCATAGCTAATTAGTA--AGAGATGAGATTCCA--------------------------------------TGAAAGTCCAAGCAAATAGCTTTACTATTGTTTTGTAAGATGCCACTTATATAAACCAAGTGTGTTGGACACTAATCTCATGACTCAtccccatat---------------ggttgtggtgacccccaaccataacataattt------ctgttgctactttataactgtaattttgctactgttatgaaccataacataaatatccctgttttctgatggtcttaggcaactaagaaagggtc-attggacccctgaaggatgtcgaatcgctgagaatcaggttgagaattgctgCTTTAAGGCACTGTTG-GGAGGCATGGTTACACA--GTTTCACTGTTAAACTCTGATTTTGTTGGTCACATCTTCTCTGAC-------------------GGAAGGCCTCATCTGCTTTGTCTG-------------AGTTTGCAGTTGT--------TACACTCATGATGAATTCT---AGTTCCTTGTTTCCACAAGGAAGAATTCCTGATGAAATCTCCAAGTCATGGCACATTAAACTGTGTT
s HiC_scaffold_1 113183457 2664 - 233722169 tgaatctaaaatgaatct---------ttttttccagt------aagtatttaaaacaaaaaa--tttatgaaaagagGAGCTTTTTTATAAGGATGATAAACTTGACATGAACA------GTTTTTTCTTTACaa---gtaattttcattaaaaactatttttaatagaTTGTAA----TGGTTATTCCTCTGAAAAGATGTTTGATTCAATAAATGGATTTGAACTTCCTCTGCCTTAAGCAAAAA-----------------TTGT----------TTTTAGTA-----------------------------AATTGATATAA---------------------------------------------------CTGAA------AAGTAGACT--TtcacaagaaaaacattttagcTTA-ATAGTAATTCCTACTAAAAGAATGatacataattataaaaatta---tacat-------tttttctc----------ATTGTAG--------------------------------------GGCTTGT----------------TGAACCAAAGTTCTCTAGTCAAAATTTATAGTAACcaagggaaatgaaaataatatatttcaacAGCAACacaaattagtttttatttattcctttaaaatagtatattttaaacTATAGAGTGCATTTTATACTGTGAAATCTTTATGTGTAGCTTTCTGTATCACCCAATTGAAATAcaa----------cttatttattata-----aaatacat-----------------------------------------------------------gcTAACA------------------------------------------------------------------------------------------------------------------AAATGTACAATTCAGAATGTTCACTAATGTTCATATTGTTCACCATCATCTAATTACAGAGCATTCTAATACCCCAAAATC-CACATCCTTTAGCAGTCACTCTCAACCCATTCCTTCCCCTTAATACATTGCAATCA---CTAATCTACTTTAAGTATAGATTTGCATCTTTTGAACATCTCATATAAATGGATCCATA----------TATAgatttaaatgagaaaagcaagTAATA-----TTTATCAAGTGGTTTTCATAGCTTAAGGAAGATAACAGAAAAAGACAATAgactaaatttagaaaataaatggctatgaaattaatattttatacatttctgagatatataaatatatttcatatttatttctatagCTGCAATTATTTTCATAGTTATAATGTGGCGGCAGTTTTAATTGAGTTGT-------------AATTCC--------TTGAATATACatttatc-------------acattttgttttattgatatgtccttggttttttaaaaagtt-catttagCAAACATAATAGTAAACATTATTATTAAGCAGTTTACATTA-----TTCAAAGTCAACTAAAACTCAACTATAATGCAAAAGTGCCT-TAACATTCTTTAGAGAAGAAACTAGTTCTTATATGAGCTATTTATGTAAtcaca-tttcttatattttaacaggaaa----ttttaaaagggcaGGGAATACCTTCTATAATTTGactcccagaacaacaacaatcAA----------TTTGCAAAA-GTTAATTTCTGATACTGGCAATTCAGGAACTCAAAAACACCTTTTaaattaatagattacaatttAGTAGTAGTTTGAAGTAAATTGCCAGCAAACGTAACAATTACATTTCATTTAAAGAacataaagttataaaattttcCCATTTGGGGGAAGACAAAATACTCACAATTAGGTGACATTACTGTAGGCTGTCCTTTTCCTCATAGAATGATTTACAGATAAATTTAACAGctgcttcaactatccaactGCAGCGCATGAGACATTTCACTACTGATCCA--GTTGTATAAGAGGAGAATGCTGAAGACACTCAGGCTTCAGATCCGGATGCTCTGCAAAACAACGCTTCAGCTCAACCTCAGAGAAAAACTTCCC-CATGATCATCTCTTGAGTCAAAACAAGGGTAAATACAAACTGACATAAATCAAAATCTAACCAGACCATACAGGATACACGCTCTTGGGGCCTGTAGGG---ACTCTCCCAGGGTCCCTTATTATTTCCTTTAACAAAT------------------------------CTGTCATTACAAAATATTGGATCTCTATAAACTAAAGTGTAACATATACATCA------------------AAGGAGGTGAAATGCTTATTAAGTG-AAATTCCTTACATGCAGACACTGAGATAATTCAAGCTGAAGCTGAACTGAATTACCTATAGAAATCTTTGCTTACCTTTGCTTTACCTACAGAAAAAGATGTTA---AACCAATTGTAAGCATGAATAATGATTCATAAATTTATACAATGTTAGATAGGTACAAATCTTAGTCCAgcagtctgtttttgttttgttgactaaggaaaaatgaaatgaaacacaaatagATA-----------CTACTTCTTGTTATATTTCTCATAGCTAATTAGTAGCAGAGATGAGACTCAATTAGTAGTAAGATGAGACTCATTAAAACTGCAGACAGCTGAATAATCAATCAAATAACTCCCTTATAGCCTT-----------TTCTTCTTAACAAAGTCTGTTAGAGCTGGGAATGGTGGCTCATCCCAGTgttcccaacactcaggaggctgaggtag----gaataATGCtgtaagttgaaggccagcctcaACTCTTTGAATTCAAAGTTAAC-CTGAAATatatagtgaca-------ccctgtctt------------aaaaacaaaaaaaatgtctgTTGGATACCTGGGTGATG--------------------------GTTATCCTTTTAAAACATCCCTGAGGAGGTAAGATTACAAAGGGTTCTACCACTGAATTCTAATTCTCCTGATCAAAACCTGTCTGACCCAGTGACTAAGAATCCCAGGAATCACCTATCTGATTCCTGGGTTAGCCTCAGTCCAGTTTCTGGTTGTAAAACTTCTATATCTTTGTAGAATTCTTCAAGGTTTTGTGTACTACTGGAAAGAATTCATAGTGAAATCTGTAAATCATGTCACATGAAACTGTGTT

a score=44023
s chr3           102995508 2250 + 160039680 AATAACAAACTACATCAATCAAAACCAGAAGAAAAGTTGAACTAAGACCGGAACAGA---AATAACTT---CGTGAAAAACCAGGATGTGG---CACCAATCCGA--CCTCTGCTGCTC--------CACCCTAGAAAGGCTAAGGCTGTGGCGAAGCCTGAGGGTAACCAAGAGTCCACCTCTGCGCAGGCGCCGACCGAGATGCCACCACGCCTTTAAAGTGCACCCGGAAGTGACGCGATTCGCGCTGAGCCAGGGCC-GGGTAAGGTCTGAGCGAAGCGCCTAGGCTAGCGGGCCCGGCGC---GCCTCCTCGGCCACTATGAGCTGCACGATCGAGAAGATCTTGACGGACGCCAAGACGCTGCTGGAGCGGCTGCGCGAGCACGATGCGGCGGCCGAGTCGCTGGTGGACCAGTCGGCTGCGCTGCACCGGCGGGTGGCGGCGATGCGGGAGGCGGGCGCCGTGTTACCCGAGCAGGTCGGCCGGGGGCCGAGCCGCGCCCAGGGGTGGACGCTGCGGGCGGGTGGGTGGGGTCGCGCGG--------CCTGA--TTTAT---CTTGGTCTGGAGGGCAGGGC---------------GGATGTG--TGAGCTTCCTGTGTCGTGGGTGGGACTGCTGCCTCCTCCGCAGCACCTGCCCATGTTTACAGTGC-CTTAGTCTGTCTTT--CTGTCCAGTATCAAGAGGATGCATCCGACGTGAAGGACATGTCTAAATATAAACCTCACATTCTGCTGTCTCAAGAGAATACCCAGATTAGAGACTTACAGCAGGAAAACAGAGGTTAGTCAGGCgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTAGGATTTTTTTTTT--CTGGTAATACTACTTTGGACATTCTTACACAAGTGCCTGAACAGTTCACAAGCGTGCACATCGCATACATATATTTAGATCAGTGCTTCAAGGGTCAACTGGTAACAGTAAAATCTGTTAGATTGCTCTTTTAAAAGTCTTCCTGGTTGATGACCTTGAAAGATGTATTCA------------GTAGTTTAGCAGAGTTGAATTGTTAGATGGCT----------------------------------------------GGGGAGTGACCAC-----------ATACCAAA---TGGAGGCTTCTATAACTAAAG-----------------------------------------------------------------TTCATAGTCTCCAAATGTAACATTTCGATATTAGAGTGAACACTAAAGTTAAGATCGACGTTTCTTTAATGTTCCTGTGCAAGATGGAAGGCTAGAACTTCGTCCCCCAAATACATAGTCTTAGGGTTGTTGATGACAGCAGGATGGTAGTTGTCTGATGGAGCCC-------TTTTACATCTGCCATTCCACTCTATGCCC---------------------CTGACCAAGTATTTACACAATGCAGCTAAGAAACAGGTTCACAGAC-ACCAGTTGGAACCAGCCAGaaggcctgaactgccaagctggaggatctgaggccattccaagggcctacgtggtttaaggagagaactgactcctgggggttct----tctctgacccgacatgtgccgtggttcacacAAATCAACAAAATGTAGttttttttttttaattttaatGAGCTCATTTTTGCTTCTGAGAAG----TCAATTAGAAAACTGAATTCAAATCCGTGCCTCGTGATTACA-----CGTCCCATTTTATTTGCACAAGACTCTACTGCCTAGAGAGTTGGTTTTCAGGT----------ACACT---GTTCACGTCTGTGGGCTTGAATACTGATTTCCAACTTTGGATTCCCAGTGTCCCGTGGAGTGTCTGAGAGCTCCAGCTGTT-AGGAGGTTTGCCTTGAGACCAGTCTTAGACGTCATTGTCCAGATGTTTGCTTTTGTTGTTAGAACTGTGGGTTTCCTTGGAGGAGCACCAGGATGCGTTGGAACTGATCATGAGCAAGTACCGGAAACAGATGTTACAGTTAATGGTCGCTAAGAAAGCCGTGGATGCCGAACCAGTTCTGAAAGCTCACCAGTCTCACTCTGCAGTAAGAAACACTGATAAATAAATTGTAAATAAACTGAACTGAAATCGTGGGGTCGTTCCTTTGTTTGCAGAAAACAGTGTTCCTCTTTCTGCATATTTTCATAATCACTCTGAATTTGGCTGTGGCTTTGTGAAGACATGAATAAAGGAAGGGGATAAGGGCCTCTTCCATCCTTTAGTGGTCAAGT------TACCTCCCTCACCAGGGATTTCTTTTC---------------------------agcttgacacagaaaga------ttgagagtaggccatcctgggc-----------------------------------------tacatagc-------------aagtgtgataccagctagtgttGAAGGCATTCAGTGACTGCTTAGCTGATTGTTG--TACATTCTATCGAGCCATAAGTTTTATAGTTCCAAGG-GCATGAGTCGG-ATTTTATCC
s HiC_scaffold_1 113205244 2428 - 233722169 AACAAAAAGTCACACCACCCAAAACCGCAAGGAAAAGAGAATTTAGGGTGGACCAGACGTAATAGTTTAACCCAGAGAAAAGGAATTGAGGGCCTGCCAAAACGAGTCGTAGGCTACGCGAAAGGAACACC----AAAGGTTAAAACAG--GTCAATCCCGGGG-------CGAGGCTACCACCGCGCAGGCGCAGATCCAAGCGGCCAGGCGCCTTTTGATTTTGCC-GGAAGTGACGCA-----TACATAGCTAAGACCAGGGGAACGTTTGACCTAATCGCCTAGGTGACTAGATCAGAGGCTGTGATCCTCCAACTGCTATGACCTGCACGATCGAGAAGATCTTGACAGACGCCAAGAccctgctggagaggctgcgggaaCACGATGCGGCCGCTGAGTCGCTGGTGGATCAGTCTGCGGCGCTGCACCGACGGGTAGCAGCCATGCGGGAGACCGGGACTGCGCTTCCGGACCAGGTCAGGTAGAGGGTAGGGGTTGTTAAGAGTTTGA------AGACAGCAGAACGGGGTCAAGTAGAATCTCAACCTGGGGTTTATTTCCTATATTGGGGGAGCAGTGCCAAGAACTTTTTGCAGGATCGGGCTGAGAATCCTGCCCTGGAGTTCTGACTCCTACCTCTTCAG--GTCGCTGTTC-TGTTTACAGCATGTTTAGTCTGTCTCTATTTGTCCAGCATCAAGAAGATGCATCCGACGTGAAGGAGATGACCAAACATAAACCTCACATTCTGCTGTCCCAAGAGAACACACAAATTAGAGACTTGCAACAGGAAAACAGAGGTTAGTCAGATCTTT-----------------TGTGtgtttatgactttttttttagtcGCTTAGCCTACG------ACTCTTATAAAACTATCTTAATACGTCTTAAG--TGCACATC-TATACCTATTTCCAGGTCAGTGCTTT-------------TGATAAGAGGGTTTGTCCGATTACCTTTTTTACAGTCATCC--------GATTCTGAGATATATATGCAACTAATCAAACAGGGGCTTAGTAGGGTTAAATTATCAGATGGCTTATTTAGGCATGCCAGACTCAGATGTGTACTAAAAAGAATTCAGGCGAGGCATGGTaacccacgcctgtaatcccaggatttggaag--TCTGAAGCTAGAGGATTGCTATGAGATAAGGCCaccgtgggctacatagtgagaccctgtatcaaaaaagcaaaaacattcaTAATCCCAAAGTCTTAAagtttaatgtttaaatattaattaaaataaaaactgaagattGAAAATTGT--ATGTGCAGGGTAGAAGAACACA--TTAGGCTCATCAAGGCTTGATGAGCACAGTATTAATGATAGAAACATAATAATTGTATATCAGTTTCCAGAGGGGTTTCACAT-TATTCTTTcactatattttcatattttcattttgaggtaAACCAATCAAGTACTTACATAGT----CTCAGAGA--GGTTTAATGATTATGAATATTAATCAAGTCACAGAACTGAACT-CAAATTCATATCTTTTGA------TCATACATCCTATATAATTT--------------CTACTGGACTATATGCTACCTCTGTCTAGAAA---GTTGTTTTTTGTGTAGGCCT-tacagtttggtttggtttggtttggcttggt-------tttttggttttagaTAGCATTTCACTTTGTaggctaggct--------ggcctcagacttacagtaatcctccc------------------tcagtctcctgggtaCTGGGTTTACAGTTGTGTGCTACCACACTAGGGTTGA--TTTGAACACTTTAACCCTGATTTACAACTTTAGATTTGTAGGATCTTGTGGAATATCATAGAATTCTAACTGTTCAAGAGTTTGGCTTTGAGATCTATGTTTCAGATCAc-accaaagtatttcatttttttattagagCTGTGGGTTTCCTTGGAGGAACACCAGGATGCTTTGGAACTCATCATGAGCAAATACCGGAAACAGATGTTACAGTTAATGGTTGCTAAAAAAACAGTGGATGCTGAACCAGTCCTGAAAGCTCATCAGTCTCACTCTGCAGTAAGAAACTCTGAtatataaattctaaataaatagaa-tgaaatttt--gattgttttcgtttttggagaaaaataagcTTGTTTTCC-------------ACTCACTGTTTACTTTGCTATAGCTTTGTAAAgatatgaataaaaagaaaaggtgaagGACTCAGGCCCTTTCAAATGGCTCTATGGTTTCTCCTTCCCTCATCA-AGATCTCTTTTCAAGATGTtgatgaggggctggagatttagctcaaggcataagcacctaccttgcaagcaggcagtcatgagttcgatctctggtaccgataaaaaaaaaaagatgttaatgaATATTTAGCTCTTCTCCTATTTAAATATAATGCCAGTTAATGTT----GTGTGCAGTAAGCACTTGGTTGTTTATTACTTATATATTATTGAACTatatatttgttgattcttaggaGCATGAATTAACATTTTATCC

a score=10940
s chr3           102998420 717 + 160039680 AAAATTCTCCTGTACAT---GCGTTCCATGGTCTTCATCACTAGGAACCTTTTCTTCATCTTATTTT----CACAGGAGATTGAAAGTCAGATCGATAGAATCTGTGAAATGGGAGCAGTGATGCGGAGAGCTGTTCAGGTGGACGATAACCAATTCTGTAAGGTTCAGGAGAGACTAGCTCAGCTGGAGGTAAGGCTCTCACTGCCAGAAGGTCACCTCTTTTTCTTTTATTTATTTTGTTAAGTTCACTGGTTGTGAGTTTTAGAGGCTCTTGGGATGTATCACCACTGTCCT--CACTGCAGTATAATAATG-------------------------------TTCCCCCTTTTTACAAAAATGTCTCAAAGA----------AGAAGAGAGGAAGGAAGGAAGGGGTTC-------ATCTCAGAATGGGGCCTGGACTGGCTAA-GAGCTCAAAACTGCCCTGCCTCAGCCTCGGCCTCCTGGGTTGCCTTGGTTGGCAGTGTTAATGTTCTTTGTGTCCTAGTGACTTAAAATTTCAATTTCTCCTTTATTTATTTCCTTTTCAGGAAAATAAATGAATGTAGTCAGCAGCAATCAGGGGAAATGTCAACTGTG---GGGCTGGGGACAGAGCTCGGTTGCTATATCTATTAAGTATATGAATATACTTGAAAAGCAGAGGG---GAGGAGGAACAGGTCATGTGTGAGCTGACTTCTC------GCAGTAATAGAAAGTCAAATACATaaaatctaaacttgatcaagaaatagcagtaca
s HiC_scaffold_1 113209158 667 - 233722169 AGAATTATACTGTGTATTATACATTTCATA-TCTGCA--GCTAAGATTATTTtctcactctttttcttttccaaaggaAATTGAAAGTCAAATTGACAGAATCTGTGAAATGGGAGAAGTGATGAGAAAAGCAGTTCAGGTGGATGATGACCAATTTTGTAAGATTCAGGAAAAACTAGCCCAATTAGAGGTAAGAATGTTGCTA---------------------------------TTTTAGGTTCACAGTT------TCTCAAAAAATCAGAAGGCATGCTATCACCATCCTACCACTGCAATATATCAATGATTTTTATATACTCctgatttcaaattaaaattcctCCTTCAGCCAGGCATGTTAGCCAGACATGTGCACCActagagagg-ctgaagcaagaggatcactgtgaattccaggacagg--ctgggctacataacaagctcaaggctagcctgaacta--------------------catagcaaggact--------------tgtctcaaacaaaaaaaaaaaaaagtcgtcC----TTTATAACCTtttcatgaaagga----aaagtaGTGAATAGCAGTCAGTGAAAAGATCAATTATGTATTAGCTGGAAGTTGAG-----------------------ATATTATCATA-TTGAAGGATAGAGAGTGTAGAAAGGAGGAGGTTATATGTAGGCTGATGTCTCTTTTCTGCCATAGTAGA-----TAATGCCTAAAACGGA----TGACCAGGAAATAGCAatata

a score=27190
s chr3           103001612 1004 + 160039680 CCAAAAAAAAATTTTTTTTTCCTCTTTCTGGGCCAAAATAGTATGTTCTGACATAGTTTAACAATTAAAACACAGGAA------ATATC----------------TTTTCTCCCCAGCTTGAAAATAAGGAACTTCGAGAGTTACTGTCCATCAGCAGTGAATCTCTGCAGGTTGGAAAAGAAAGCTCTGTGGCTCCTGCCTCTCAGACCATCAAGTAACTGGACTTCCGAAGGCTGGCTACAGCTTGCCCGTCAGAGCGAGAAGCCGTGCCCTCCTCTCCTGCCGTGTCCAAGAGTCCTGCCGCAGACTTGACTTAGTGTTGGGTAGAGGTATGGGGTGGCAGTTTAGAATTGCCACTTGGTATTCATTGTCCACTAACTAG--TTTGGGGTGTACTAGTGAAACTAGACAAGTCCCCCATTGCTGGGAC--AGAGATGACATTTGTCACTCT--------AGTCCGGAATCTCTATAAACTGTTACCTGCAGTTCAATGTTGTTTTTCACAGCTTGGAAACACTGAACACTTTTATTATAAGCCAG--GATTTTATTTTATATAGGATTATAAAAATTCCTTCTAAGAGTTTTTCAA---AGATTTAACTTTTTAAAAATACATATTTGGTGTAAACCTAGATTTTTTTTTTCTTCCACTTG-TAAAAGTAGCATGACTTCAAAGAAGCAGATTGGCAGAGTCTCTGAGTGACGTCGCTCATCCATG-GGGTTTGATCCTCTCCGGTGCTAGGAGTTGGCACTTTGTGGTCAGGTGTCTTT-GCTCTTAATTTGAGAGAATCTATTAGT-------CCCCAGGAAATACGCTTGAAAACAAGTAAGCCGGGTTCGCGTTGCTCCTCCTCCTCCTCAAGGATCCACAGTCAT---TCAG--AGAGTGCTGAGGAACTTGGGCCTGCCCCATCATGCACAGGGAGCTATTAGATGTACATGACTGTACATGTACATTGGACTTAAATGCCAAAAATAGCTTTTATTTATTTGACCAAGTAGTTTTCCATTCTGTCTGCCTAAGGAGTCTTCGGCTTAG
s HiC_scaffold_1 113212858  945 - 233722169 ctaaataaataaatctattttctgtTCCTGGCCCAAAACAGTGTGGTCTGACA--GTTTGACAGT-AAAAAACAGGAATAAAGTATATTCAGATTTgggggttgttttctttttcagcttgAAAATAAAGAACTCCGAGAATTATTATCCATCAGCAGTGAGTCTCTTCACACCAGAAAGGAAAACTCAGTGGATACTGCTTCCCAACCCATCAAGTAATTGAACTTATGAGTGATGCCTGGAGACTGCCTATTAAGGAAGGAAGTTACTGTCTTTTCATTTGTCCTTTC--AGTGTCTTGCCTGAGAGT----TTAGTGTTGATTAAAGGTATCAAATGGCAGTTTAGAATTCCTAGTCAGTATCTACTGTCCACAAAACAAGTTTTTGGGTGTATTAGAATATACATGGAGTTTCACCATTCCTTTCTCTAAGAGACTaccctttccatttttatttgtgaaGCCTTGATTTATATAAACta-tattttcagttcatttttctttttcacatctttgaaactttaaata-ttttactataagccaattatttttattttatataagattGTAAAATGTACttctaacaattttttaaaagagaattaagTTTTTAA----ATCTATTTGGCATAAGCTGAA--------TTTTTTCCATTTGACAAAAATAGTATGATTCCCTAGAACTAAATTGGCAGACTCTGATTGTAATGTCATTCATCTGGGCAGTTTTGAGTCTTTCTGGTGCTCAGAGTTGGCACTGTATAGTCAGGTGTCTTTCACTCTGAATTTGAGAGACCCTACTGCTACCGTAGTCCCACGGAttgaatttgaaaacaaat----------------------------------ggtAGTATAATCATATATCAGTCAAAATACTGAGGAActtg--------------------------tcctgtgtgtgtgtgcc---acacGTGCATGTAATTCACATGCCAGAA--------TATTTATTTGACTAAATA-------------------TAAGTAGTCTTTGGCtgag

a score=8316
s chr3           103016791 185 + 160039680 TGCTGATAGAAC--ACAGTGACACTATTATATTTTACATGTCCCTTTGCTGTGATATTCT-GAACATGTGCTCCTAGACCTAATTCTACTTTTAGTCCAGTTCCACATGATCTTGCTTCTAGTACAAGAGCCCAAGGCAGTTATTTTGTAACAATGGATAAGAATTCTTTAACTCAGTGTGTGGCCAG
s HiC_scaffold_1 113243214 187 - 233722169 taTTGATAGAATTGGTAGTGATGCAATtatgttttacacttttctttgcTGTGATATTTGAGAATGTGTGTTTCCAGACCTAGTGCAACTTTTAG-CCACTTTCACATGACCTTGTATCTATTGCAAGAACCCAAGACAGTTTTTCTGTACTAATAGATTTGAATATCCTGACTAGATCTATTgccag

a score=66835
s chr3           103019968 2899 + 160039680 CTTATTCAGACT----GACACACTACAAAAATCTTCTGGTAACTGAAACGGACAGTTAAAGTGGTTTGGGGAATTTTAGATTTT------------ATTGATAATACAGCC-----TCGCTTATTTTTGTCTGTCGCAAGCAATGTAGTTTCTGGAAGACAAAAGCTTTAC----------AAATTACTTTGTTAAAAACTTTTCTCTAAAGCAATGAAATCCCTTCTAATGTAGGAGACAGGAGAAAG----CCTGTCCCGTGACTAAAGAGAAACTGCGATTTGGACTCCTGGATTATGGCTGAGGAAAGTGAAATCTTTTTATTCACGACACTCCCGGATCTGCCCTCAGAACTGTTCCTACTTCATAAGGCCTTCCTACTCAAGCCTCGTCGCTGAAAGCTTTCGGGCTCGCG----AACACCGGGTGAACGCCTAAATTCACCCTTCGCCCCGCCCCCAGCGTCGCAGCAGAGTCACTAAACGCAGAGATTGCTT-CTGGCACTACCCAGGGGCGAACGTAGAGAAGAAGAGTCACCGGCTTGCGTGTGGCTAAACGCAGGTCAGCGGCTGGCGTCACTCAGCCCTCGCGCGCAAGCGTACTAAGAGCACGCTCCCC--------CCACCTTCCCGTGCACGCGCTCGGAGCCTGCAACTCTCGCGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCTGGAGAGGGGGCGCTGAGCTGTTGGGGTGAGTACGACCTCAGTGTTAAA-GTGGGGGTAGCAACGAGCCAGGTTAAAGACAGCTGAGGAGACTCAGGTTAACGGGAGGGACCTCTGAGTGTCAGAGTGGGCACTCCTAGAATTCCGGAT-GGAGGAGAGTTCAGTGTGAGTTCCTACTCCAGGCGTCCCTTTTTCACCCTGGCTTCAACCGTCTCGGCCTCAGGGCCGGCCGCGAAGCCTTAGTGAGGAGGTGAGGCCAGGGGGTGCGGGTAGCGGCGGTGTCGGTGTCGGTGTCGGTGACTGAAGTGGGGGGAGGGAGCGAAAATGGAAACTCCGACCGCAGCCAAGATGGAGGCAGAGGGTGCGGGGCTCGGGCGCGAAGGCTGCCGGGAGCTGTAGTCCGTCCTCTTCCCCCTCTGCGGCTTGGCGGGGGAAA-GGGAACTACAAGTCCCGGCGGGAGGGGTGAGGGGGTGGTGGCGCGGTCCTTTGTGTGCAGCTGGAAGAGGCCGGGGAGAAGGGCCTGTTCTTTTTTTCGGGACCTTGTC-TGTCTTGGCCGTCACTGGCTTTGGGGATACTACTACGACTACCAGAGCGCAGTGCGGCAGTGGCGCCTTCTTTGTGTGTGGGTTGAGACCCTGTTCCATCTAGGGAAAGTGCTGCGGGACACCTCTGTTCCCTCAGCCACATCTGACCCTAGC--GCGGCGGAATTGACACCTTTACTCACATTCTCTTGTGGCTGGGTCTCCACACCTAA-----------------CTGTCCTTTGGCATTTGAAAAAGGAGTCGGGCCCCGTTCTAGGCACGTGTCTCCCACCTTTCTGTCTGGGGTAAATGGCATGCGTTAGGAGAGTTCCGTGATGCCCTCCCT---CCGTGGTGCAAGCGCTGGCCTACATTGTGCAATGAATGGCTTGGCTTTGTCATGT-------ATCTATCTAGTGTGAGAGCCCCAGTCGGAGA-----GCAA--------------------------------------------ATTAAATTGGAA---GATTTGACCG---------------TCGAAC----------------------GTTTCA---------------------------ACCATACCCAATC-------------TTAGTGC-----CCCGGTTCTTTTGCTTTAAAGAGTTAACCTTAGAAACACCTTTGTGGCTGGTCTCCAACCTGACTCACAGGTGA-GCAGGGAGTACTCCTTAACACTTTCCACTGCAGAAAACATTCTGAACATTATTAAACCACTTAGTTTCCTT---GTTCTGCAACTAAAATGAGCAAAAAGATAGTGCTGTTTAAGCAGTTGAGGAGGACGGGCAGAAAGGAACTAAGGATGTTTAAAGATTGTAGTTGAGTTTGGACATTATGTTAGGCTGATGTGAACTTCTAGTTCACAAAACTGCCAAGTTTGTTTTTCTTTTGTTTATTGGTTATAGCCTTAAACTGTGCAACCTAGGTTAGCCTTGAAATGGCTGGCTGTCTAGACTGCTTGCTTGCTCTAACCTACTTTTTAAAAAAATAAGTTCCAAATTATAGGGCATTAATTCAAGCTACCAAAATGCTCAGTCTGCCCTCCCCACCCCCTTTCTTTTCCTTTCCttttctttttttgagatagggtcttactgtgtagccttgtctggcctcgaactccgtggaccaggctgtccttgaagttacagagatctgcttgtccctgcctcccaagtgcaggattaaaggcatgtactactgccatgcctgTCGATCATCTTGATTTTTAGGTACTAGAAGGCAAACTCATTACTAAATTGACAGGCGATATAAT-TATTAATGTGGATAAGAAGCAGATTGTGTACATAAACAGCCACGAATATGTAAGTTATAAAATCTAGGCAGTAGTTACCTGTCCCTTCTTTAGTcccatcactacagacctagcacttctgaggcagaggcaggcagatctctgagtttaaggccaacttaatctgcagagcaagttctaggacaaccagggccacattgagaaaccttgtatcaaaatattaaaaACCAAAAAGAACCTTGGATCTAATACTTGTCCTTGTTTCTTTTCC-TCTTAGAACTGGAATGTAAAGAGCTGGTAGTAGTT----TGGTTTTGCAGCTGCTCT-GATGTTTACCATCACCATGAGTATTTATAGCAGCTGAGTGGAAAAGCAGAGTATTTGAAGCACAGACGATAGGTTTTCTTTTTTCATAAAAATAAGTTCTGACTT---AAGTGTGACCTTTATAGGA-ATGATTGGAAGTTGTGGTAAGTTTCCAGCTAATGAAAACTA---TGAA-------CTGCTTTCTTTTTCTTTCACACCCTCCCTTC
s HiC_scaffold_1 113246405 2554 - 233722169 CTGATTTAGGCTCTTTTATACACTACAAATATATTTTGGTAACTAGAAAGGTCTGTTGAAGGAATTTgagg--tttttggttttgctttattttgaagtGATTGTACAGTCCTTGCTCACTCATGTCTATCTGTTGCAAACTGTTCA-TTTCTGGAAGACAGAGGTCTTGCTTAGGCATCCAAATTACTCGGCTGAAAACCTCTCTATACta-agtaaatttcattttaatgtgaAAGATAAGAGAAAGAATGTTTGCCCTGTGAGCAGAGAGAAACTGAG-----GAATTTTGGATCACTTTTGGGAAAAAGAGAAACTTTTTAT----GAAATTCCTGTATATTTGCTCAAGGTT-----------------------TACCCTTGTCTCGCTGGGTAAAACAT----ATTCACGTTGTAAAGCCGAGAGA-CGCCCCAAATCACGTTCCACCTCACTCCTAGAGTCCTAGAGGAGTTAGTAAACACTTAAATTGCTTTCTTCCAGACACCGGGAAGAAACTTAGAAGACA---GCTACCATCTTCGTTGTGGTTAAACACAGACCACTGGTTAGCGTCACTCAGCCCTTTTGCGCAAGCGTATGCGGAGcactccccccgcccccccccgcCTTCCCGTGCACGCAGTCGGAGTCTGTAACTCTCGCGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCTGGAGAGGGGGCGCTGAGCTGTTGGGGTGAGTACGACCTCCGGGTCCAATTTGAGGGTCGCAAGAAGCTCGGCTAAGGGTGGATG-GAAGACCAAGACTAATAGGAGAGACTTCTGA--GTCAAGGTGGGCACTTCTGGAGCTCCGAGTAGGGAGAGCACCCGCCCTGAGTTCCTACCCTGGGCTTTTCCGTTCGTTCTCTTGTTCAACCGTCTGGGCTTCATGTTAGGCTACAGAGCCGTAGTGGGGAGTTGAAGCCAAGGGG-GCGCGTGGTGATAG---------CTGTAGTGGTGACTAAAGTGGGGGGAGGGAGCGAAAATGGAGGCTTCGACCGCAGCCAAGATGGAGGCCAAGGGTGCGGGGCTCGGGCGCGAAGGCTGCTGGGAGCTGTAGTCTGGccactt-tctctctgtgtcttggCTGGGGAAACGGGAACTACAAGTCCCGGCGGGCGGGGCGAGGGGGTGGTGGCGCGGTCCTTTGTGTGTAGCTGAAAgaggcagaggagaggggccTACTCTTGCTTC--ATACCCTGTTGTTTCCTGGCGGTCCCCTG-TTTGGGGATGCGACTACGAGTACCAGAGCGCAGTGCGGCAGTGGCGCCTTCTTTGTGTGTGGACTGAGACCCCGCTCCGTCTAGAGGAAGTACTCAGGAAGAC-------TCCTCAATCAAAACTGACACTGTCATACAGTAGAATAGACACTCTCACCGCCAGTCACCTACAGCTGGGTTTCAACATCCAGTCTTCCCCCATTGGTCTCTTTTCTTCGTCTTTCTTAA--------------TCTTGTAGGCACGTGGCTCCCAC-------------------AGCGTGTTCTGGGATAGTTCAGCTGTAGCCTCCGTCTCCTGCGGTGCAAGCATAGCCTCACGTTGTGCAATGAAGAGCTTGACTTCGGCATTTTTTGTAAAGTTGGTTAGTTTG-----CCCAGTTGGAGACACTTGCGAGGTTTTTACCATTCGATGTTTTTTTGAGGTTTGTTTGAGGTTCTGTTTtgttgaaacagggtttcactgtagTTCAAGGTtgcctcgaacttgcagcgatcccCTTGTCAcggcctcacaagtgctgggattgcaggcatgcgccaccatgcccagccatccCGTGTTCTGTCGGTGCGAAATCCAGGTTCTTTTGCTTTGAA-AGTTTCTCTGAGAAACACTCAAATGGCTGCTGTCATGCTTGACTCACAGGTGAGGCGGGGAACACTCCTTCaaa-----cactgcaaaaataaaaaagaacctg-------tACCTACTATAATTGGAGTTTAGCCCCTAAAATGAGTGGAAAA--AATGCTCTT--GGCAGTC-AGGAGGAAGGCACTGTAGTAGTTAAATATACTT-----------CTGAGGCTTAAACTTTTATTATGCTGGTATGAAC-------------------------------------------------------TGAACAGTTCA--------TAGCC-----AGAGCTA-----------------------CcaacctcctttttaaaaatgtaaattccaAATTATACCCCACTAATACAAGCTACCGAAA------------------CACCAGTTTTCATTT----------------------------------------------------------------------AGCGCTCCTGGAA------------TACTTAAC------------------------------------------------------------ATTTTCAG-----------------TCTTACTTCTCTGA---GCAATATAATATTTTGATGTGGATAAG---------------------------GAAGACGTTTGTTAGATACT----------------------------------------------------------------GGGCAGGAATATGTCTG-------------------------------------------------------------------ATCCAAAACttaga---------------taaataaaatagtcagtcttgtttctttttagtcCTAGGACAG--ACTAAAAGCACCAATAATAGTCTGAGTGGTTTTGCAGCTGCTCTGGATGTTTACCATCAAGATGAGTATTTATAGCAGCTGAGTtgaaaagtaaagtatttaaggCACAGaagataggttttctttttttgt--acataAGTTCTGACCTAACAAGTATGGCCTTTAGAGAATGTGCTTGAAAATTCTAGTAAGTTTCTAG--AAAGGAAAATAGAGTGAATCCGTGCCTTCCTGCTGTATCTTTCCCGTTTTCTCCCC

a score=12293
s chr3           103024402 451 + 160039680 CTTGTTTTTAAATCCCTTTTACCCAAGCAGGATTTAGAAATCCCCTTTATCTTGCATTAGA-TGTTTTCCACTTGAATGTGGTAATAATAATTAAAAACAAACCAATACAAAACTTTAGAAATATTTAGTGTCTTTTAATGCTAAGGTACAGCATTAATACAAAGTTGACAATAAATgtctctgctctttcccaacattgtacaggtaaaatac-cattggtttaaagctacagaaaata-----------aattgcatttctgtttgtccaactt-ggtaattacAAACTCCAGTAAGCAAGCAAGTCTTTGGTGGATATTGCCTCCTTTTATTAGTTGAAATCTTTGCCTAGTAAACTTACTGTTGCTTTAAA-------AGACATGTTTTTCCTTC------TCAGTTGATGGCTTATTCTGCAG--TGCTTTAGCCACTAAGCTAGGTGTGGCTATTAAACATTGAAAATGTAACT
s HiC_scaffold_1 113249641 464 - 233722169 cttgctttaaaatcccTTTTGTACAATCAGGATTTTAAAAGTGACTGTTTCt-atattagaatatttttcaCTTGCCTTTTGGGTAcctaattaaaaacaaagcaatacaaaactTTAATA--------TGTCCTTTA-TGCTGAAGTTAAATATTAATATGCAGTTGAAAA-AAATTGATGGGCATTTTCCTCA-ATTGCACATGTAAATCGTGTGTTGGTTTGCAGCTGTGGTCAGTACCTAGCTAGTGATTTGCATTTCTGGTTCTCTAGTTTTAATAACTGTAAGCCCCCATACATAGTCAAGTCTGTGCTGGGTACTGCCCCCTTTCATTGGTGAAAATCTTTGCCTAGTagtcttaattttgcttttagcTTTCGCAGGCATGTTTT--CTTCCTGTGATCAGCTT-TCACCTACTTTGTGGACTGTGGTAGTAACTATTC-ACATGTGGCTATTGTGCATTTAAAGTATGACT

a score=37821
s chr3           103028215 1014 + 160039680 AATCACATAATGC------TACAGTGTTCCTATTTTCAAAGAACTTAATATTTTGTAGT-TGTTCAGGCTTGTCTTA-GTGATCTTT-ATGCGCAGGATACTTAGTTGTTTATTTACTCTTAGTTTTCCAGGTTCTGTTCAGATTCCCTCTTAG----------TTGTGTGTGTTCGCTGCATTACTTTGCTGCTAGTATACTGGTGAAAGGAGTGTGCCTACTGATGTAGTGTGTTAGCTAGGTGGTTAGCCTACCTAGCAACTGA----ATTTTGTGTTCTGTATTCTACTTTTCTCC----AGTGTAGCTTTTCTGATCTAGATCTAGATTGCATACTTCAATGGGGAGTTT----GTTTTCAATAAAGCCTAACACA----CAGATGTCTGTAAGA-TGCTTGTG-CTAGCTGGATATCATAACTTTGCAGGTGATGAAG------AGATTAGCAG-GACTTTGGGATAATTTGGGGTCTTTGCAGAGGATGTAGGCCATCCTCACTTGAGCACTCAAGAGTGAACAGTTTCAAGTACT----------------TGCATCACTGGATCCTTC---------------------------------------CACTCTCTGACCCTGGTTCTCTA---------ATAGCTAA--CTTTTGTCTTTGTCTCTATCTCCAGTATGAAGTGTAACAGAACAGACTTTACCACCTGAAACTGCTGCTTCAAGTTCAGATCAGGCAAGGAACAGACC-CGCAACAACCAACAACACCAAAGAAGAGTACAC--AAGTTGAAGACACAACACTTGATCTGAAACAAGAAGTTTGTGCCTACTCAACAGCTTTGAAAGAGCACTTCCCAACGCTGCTAGTAGTCTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGCCCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTGGTAGATCATTTCCTCTCGCTCTCcttttttttttctttttttctttttcttttttttttctttttttAAATACTAGCAACTTTCATCCTTTGGAACTTGTGCTGAAAAAAGAAGAGTCAGCAAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGGTAGGTTTGAATTTTCA
s HiC_scaffold_1 113255866 1051 - 233722169 aaacacataataaaaatcatatatggTCCCAACTCTCAAGGAACTTAGTATGTAGTGGCATATTCAGGCTTGGTTTATGTGATATTTCATGCCTAGAATActtgact-tttatttctt-----ttcttagaattctgtctatttttcatttcaaattctaCATCTTCTCTGTGCCCACCATGTTGTTTTGATGCTCATACTATAGTGAGTAAACAATAGTTTTAGGTGTAATTTAATATT-----------CTCAAATAGTAGCTGAGCACATTTTTGgcattttgttctgctttttttctctaagtttAACTCTT---------AGCAAGATGATAAACT--GATGaaacttttttatgttttccacAAAACTTAATGCAGTGCcagatgcttttaaaaatgcttatatcAAATTGAATAT--TAACTTC-CAGTTTATTAGGGGTAGGAGGTCAGTAAAGATTGTGAAATAGTTGGAGGTTTT------GGGTGTGTAACATTAAAA---AAGCAATCAGTTGAGCAATATTTCAAATACTACCAAAGAAAGAGTACTGTATTGCTTGCTTCTCTAGTGAGTCTGAGTTAATGTGATGAGTTTGTCTCATTTCTCACGCGATGTTCCTGATTGTTTGGTGTATGTTATACTTAATACTTTCACTTTT-----TGCCTCTAGTATGAAGTGTAACAGAACAGACTTTACCACCTGAAACTGCTGCTTCAAGTTCAGATCAGGCAAGGAACAAACCTCGTAACAACCAGCAAGACCAAAGAAGAGTACACTTAAGTTGAAGACACAACACTTGATCTGAAACAAGAAGTTTGTGCCTACTCAACAGCTTTGAAAGAGCACTTCCCAACGCTGCTAGTagtctttgttttcttcagtgctgTACTGTGAGATTGCCCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTGGTAGACCATTTTctctcg------------------------------ctttttttttttttttttttaatactagcaACTTTCACCCTTTGAAACTTGTGCTG-AAAAAGAAGAATCAGCTAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGGTAGGTTTGTAGTTTTA

a score=23046
s chr3           103035742 1655 + 160039680 TTAATGTTTCTAATATAAGTCCGGCTTATACAttagatct-tattaaat-agtcatgtctttc--------ataatgaggttgaatagttagttctgggaataaacgtgttgatgtccatgtgctttgcttgtgctttgcttgccttccatata--------tatacatttctttctgctgacagtgcctctgctatgg------agtcgagcctagataactaaatgtgtagggccattcattcgagtatatttcaactatagtatactgagaacaaatgaataagaaagagacttcactgtcaacTTAGTGAGTTTGCAGTTT-------AATTTTCAGTAATATTAAGTTATATAAGAAGTAT------ATTTGATATA-TCAGTTTAGTGAG---------------------------ATATAAGCTACATTT-----------------ATATAGCTCATATTC-----------------------ATATCATATAGTAATATTC-------ATAGAAACTAATTTTT-ATCTTGGGCAGAACCATAAATGCAGTATTCT----------------------ATTTTCCATT------GGGCTATAATTGATAATAGATTCTGTTTACTGTTT-------------GGAAATT-------GAAAAGAAATTTGGAACAGTGGTCTCCTT--ATTAGCCACTAAAG-TTCTTTTTTTGttttgttttttgagacagggtttctctgtatagccctggctgtcctggaacttgctctgtagaccgggctg---gcctcttaacacagagatctgcctgcctctgcctccaccaatgagggatgaaaagcatgtgctagcaTTGTGCCACTAGTGTTCTTAagacgtttgtaaagttccttataacacaggactgtttaatgtatctgagagaacCTTTCAGTTGGACGT----------TTATTTACTCTTGTACTTGTTAAACATTATGCTATGTTGTCACAGCTGCTTGACATGGAGAACATGCTTACCGTGTCATCAGATCCTCAGCCCACTCCTGCAGCCCCTCCTTCACTTTCTTTACCTTTATCTTCATCATCTACCTCATCCTGGACAAAAAAACAAAAGAGGACCCCCACATATCAGAGATCTGTAAGTCAGGAAAGGAGTGAT-TCAGTTTGTCTTGCATTGTG-----TTACACGCATGGCTTATGGGGGCCACGT-CGTCTGGTTGAAGT-GCCAGTAGGCTCAATTTATAGCTTCCTAATCATTTCTTT-GACTTTGACTTTTGAAAGATTAACTTTCGGACCCTGCTGTTGTAAAAATGTCTTAAAGAGTGAAGAAGCATTGCTTGCCTTAGATCTTGTTGGAAGAGGAGAGTTTATACCCTTATCTTCACTGAATCTGACTCTGCTGTTTTAATTAAATTGTCAAGTGGCTTTAGTTGGAGAATTTAAAGCCAGTTGTGTGGAGGTGGACCTC-GTTTGAGTTGTCTATCAGTGAATTTCGGCCAGTGGT---------------TGTTTTCTACATGGTAAAATGGGCATAGTGTATT---------------GTTTTTGTGAAAATTAGGTTAATACATTTCAGAACAGTGGCTAATACAAAGGAAATAGAACCCAATTACTAACGGGTGTG----CATTGATTTGCATATTTTGGACATCCCATGTATTAGTGT-ATTATTTA----ACGGTTTATCTTtttttt------------ccctttaatatagggtttctctcagtagctctgcctcttatggaatttactctgtagagtagggtggcttggacctctctcagatccacctgcccctgtctcctcaatgctgggattaaaggcttgttccacca
s HiC_scaffold_1 113261536 1697 - 233722169 TCATTGCCACTAATTCAAGTTGGTATCATACTTTTAATTTGTGTTACATTCTTCAGATCTCTACCCTGAAAATGAAGAGATTGAATAATTAGTACCAGGAATAGAAGTGGTAGCTTCTATGTTCTTTACCTGTGTTTAACTTGTTTTCTGTATAAggttttgcaaaaatatttttcaaccaTTTGTATATTTGTGAGGGTAGTTCAGTTGAGA-TAGATAATTAAATATGTATATCGAACTAGTTGAGTGTA----AACTATAGTATGTTGAAATCAGTTTAGTTAATGAGGG-CTTCACTGTTAC----GGAGGTCTCCAGTTTTTCCTGAAGATTCCTGAAATA---------ATATGAAGCATGTGTTCATCTGACACAACCAACTTAGTGATGCCTGTACTGTAAATACAAGTACaaatataaaagctttttttttttttttgtaccagggatggaactcacaacctcacgtttgccaggcaggcactgatgccactgagctaaatccccagcccataaaagctaattttttatttctggcAAAAAACCAGTTCTAATATTTTTACACACTTGAATTATCTGTGTATTCTCCACTTATGGAGACCAGTAATTGAGAAC----TCTACTTAAAGTTCCTAAACATTAGGAAGAAATccgggggaaaaaagaaatttgactGAATAGTCTCACTCCAGCAAACACTAGGGATTCCTTATTTGT----------------AGGTAACATGGAATAGAGATTAAGGGCTTTGAACATGTT------AATGTGATGTATGTCCCATGAAATAGAAATTTG--------------------------ATTAAATGAAT--------------------------------------TACATTTTTCTGTAA-ACAAGCCTG--------AgtttagaaaacataaaagttgAATGTCATATGTATGTTATTTA---TCATAGTTAT-AAACATCATGCTATATTACCACAGCTATTTGAGATGGAGAATGCATTTACTCTGACTTCAGAGCCTCATCCCCCTCCTGCAGCCCCTCCTTCactttctttatctttatcttCAACTTCTACCTCATCTGggactaaaaaacaaaagaagacccCCACGTATCAGAGATCTGTAAGTCAGGAAAACACTGATCTTAGCTTGTCTGACTTTGTGTTACATTACACGCATGACTTAGTAAGGTCACTTAAGGTTTGTTGAAATAATCTGCAGACTGACTTCTAACTTTTCTAAACATTTCTTTCAACTTTGA----------AATAACTTT----------TGTAGTTAGGATATTCTG-----------------------TTCAACATGTGTCAGAAGA--------Catctcattgtcttcactgaatcaaatttta-tatattaaccAGAGAGCCAGGAGATTTAATTTTAAG------CAGCCCTGGTTGTGGAGATAGACCTCAGTTTGTATTGCAGTTTGG----TTTTAGCAAGTCATTTAACCTCTGTATTCTGTTTCTCCTTTGGTAAAGTAGTGATGACATGCTACTACTTTTTCATGGGCTTTTGTAAAAATTGATTTAATATA---------ACTGACTAGCATGAAGGTATTAAGA-CTAACCACTTTTAGGTGCAGTGTCCTTGGTTTGCGT-TTTTAACCATCCCACCAACTATTTTAACTATTCATACTTtgggttatcttttttttttttcccccctgtctTTTGAGACCAgg-ttcactgtacagttcaggctggccttgaacttactttgtaacctaagtttgccttgaactcagtgcaatccttctgcctcagattcCAGAGtggtggggttacaggcatgtgccacca

a score=117372
s chr3           103038650 2947 + 160039680 ATACATAGATC--TATATATATTGA----CTTTTTTTTTTTAAACAGATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACACAATGGGTACCCCAATGGTACTTCAGCAGCACTTCGTGAAACTGGGGTTATTGAAAAACTCTTGACCTCTTACGGATTCATTCAGTGTTCAGAACGGCAAGCTAGACTTTTCTTCCACTGTTCACAATATAATGGCAACCTCCAAGACTTAAAAGTAGGAGGTAATCTGTCAGCTCACTTTTGAACTTTCTACTGTGTGTCTGCTTGTTCCTGATAGGACTTTTCAGT-----CTGTTATAAGCCAGAAAAGA---TGAACATATTAG--------TTTTGCTTACTACTGAAATAT---GTGCCCTAATTTTTACTATGGCAATGTCATTTTGAGATCTGAA---AAACTTAACTGGTAAAAAGATATATTTGAGGTTTGTTTTTTTTTTTTCTTTAGATACTTAGAAGATTTAAAGGAATGAAATTATAAGATTTCTTAAACTAAAACAACAAAAAAAAATCCCAAgaggctagaaagatgccacagtagtttgaatacttgatactcttgtataggacctacgttcagttcctagcaccaacctcagcgcat-acatactcagttgcaaggcatctgatggcctcttctggcctttgtgggcaccagtcaccaaatg--------ttgtctgcatacatacatacgaacaaacaggcaaaactctgattcacataaaa-----ATATTCTTGAGAATGAACTTAGAGCTGTGGCTAACAtgagtatttggtgtgtaccagatgctgggggtgcatgctgtttagcattattttgtttaatcctctcagcaatattgtatgttagaaattattc-cattttatagataaggaagctaaagT---AAGATGTT----------------------------------------------------------------------------------------------------TCCAAATC-----------------------TGTATTATCTTATTTGTAATGTATATAAATGCCATGAAAACTAGGTCATGATCTATAGCTGCCTCAGTCTAAAATAGTCTAAGACTAACTCAGTCTAAGtctgaaatgctcgtgtgtgtgtcagttggttggaaggctcaataaaatacacattgctgtacttgattccccagagtttgtctttacctaggtctgaagtgaggctcaagaatttgc--atggtctcctaagtttccaggta--acgttgatgcttcgggcctaggaaccatactttgagaaccactgGTTTAAGGCAACTCAGATATTAC---------ACACCTTAGAGGT------------CAGATG------------------------------CAAGATGCTG-----------------------------------------------------------------------------------TTTTTCAAGCA-------------------------------TTAGTCCAACAAACATGACACATT---CTTTATTTTAGATGATGTTGAATTTGAAGTATCATCTGACCGGAGGACTGGGAAACCTATTGCTATTAAATTGGTGAAGATAAAACCAGAAATACATCCTGAAGAACGAATGAACGGACAAGTTAGTGACTTTGATACTTTGTATTTCCTTAGGGCCCCATATTTGCATATTTTTCACATTAGAAAAGGAAGATTGTCCCTTGCCTCCTCAGTTTGCACG-AAGAGAGCTCTAGTATATAAAGATAACT--TTTAAGATTAGATCAGAAGCACTGGCATTTCTTGACCTGAACTAAAAACATGGTCAAGACTCAGTTTGGGTTTTACATATAACCCTGAGTCTTTACTTACAGTCAATTTGCATACTGTAAGTTTGAAACTTGGCAGCATGACATCCTCTTGTGGATCATATTAAAATGCATCCCTGTATATAGTATAGAGGATATTAGAACTCAGTTTATATTGCACAGTGCTGCTCCTGAAATGATTAGCAATGGAAATTTTTTTTTTTTTGACTGGTAGGTTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCCAGCTGCC-CCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGTAAACTTGTGTATTTTTCTTAAA-CCTTTGCCTGATCCATCATGTGATCTATAAGCGTACTTTAAAATTCAAAGTAGAAAACGTAAGCTAGTTGCTAAAATCACTTTTAAATTTGGTTT-TATGAGGCTTCAAGTGCAGCataataaaattatttttaaagaaaaaaatCCATAGGACTTCCAAGTGTGTTAGCTTGCCCAAGTGTGACCTTAGTTAGAACA-TTAAGGTAAAATGCTCCTTTAAATCACTTTTTGGTGGGTTGTGGGGAAGGGGATTTATTTCTGGTTCCTTTTAAGCACTAACTCCAGTTTTTTTATTTGGAATGCCTTTTGT-AAAGATTGTCTTTTTGAAATGTAACTACAGTCTCTGGGCAAATGCTTCCACGTGTGTAAGCTTTTTGAACTTGGATTGCTGCTCAGCTGTGGACTCAAAGAAGTCATCAGCACCATGGAGGGG-AAGTGTGATTA--TGAATAAGACAACTTACTTGTTATACTGCATATAA--CTAAGAACTGTGGCTTTAAAATGCCAGTATAAGAAGTATTTGAGTAAGTG----ACATTGTACAGTGAATGTGCATCCTGTTGAGATAATAATAATAGCTGGTTAATTCACAGGAAGTATTTTATCTGACTTACACCTCTGAAGATGTGGAAGGGAATGTTCAGCTGGAAACTGGAGATAAAATTAACTTTGTAATTGATAACAATAAACAGTAAGTTCTCTTCAGTATTTTCCTAACCTAAATGATTCTTTTTTG-----GTTACATTAAAAAAATTTGAAGTGAGagccaggtgtggtgttctgtcctgatagtcctaatacttgagaggtagagacagtatcatcaggagttatagac----caggttgtgtacactgggtcctgtttcaaataccaaaAAGAAGGAA----------AGTTGGGGTGGGAGGA-----AAAATCTGAAATT-----ATTTAAACACC----------TAACTGACAAATCTGGATACTTTTTATGACCCTTGAAGATTTTGTCCAG---CAGCTTGAGACCTTAAAGGTCTGTGACTATTCT---ATAGGC-------AGGTATCAGAGTCTAAAGGTGACTAAAACATTGTCA
s HiC_scaffold_1 113264577 3109 - 233722169 ATGTATAAATCACTATATATAttgagttcattttctttttaaaacagatgAGCTTTGATCCAAACCTTCTCCACAACAATGGACATAATGGGTACCCCAATGGTACTTCAGCAGCACTTCGTGAAACTGGGGTTATTGAAAAACTGTTAACCTCTTACGGATTTATTCAGTGTTCAGAACGTCAAGCTAGACTTTTCTTCCACTGTTCACAATATAATGGCAACCTGCAGGACTTAAAAGTAGGAGGTAATCTGACAGtt---gtttcaaatttcttttgCATGTCAACTTGTTCATGAGAATACTTTTCAGGAGAAACT----TAAgtccaaaaaaaaattgaaagttttggCATTTAGCTGTTATCAGTTACTGAAGTATGTAGTATCATAATTTTTGTCATGGTAGTTCTTTTTTAAGAGATGAAAGCAAAGTTGA---GTAAAAG---ATACCAGAA---------TATTTTTACAGTAGATGATGA-AAGAGTTAAAGGATTGAAACT-------------------------------------------GCTAGG--------------------------GATAGTGTTGCAT---ACCTA-----------------TAAcctgagcacttgggaggctgaggcaggaagc------tggcctt-----gagtttgaggccagcttgtaccatatagtaaaaccctgtct---------cagaaaactaaagtaaaaagatTATGaactatatttgatttttaaacttctgAAAA-GGTCTCAGAAC---GACTAATAGAAATAC----------------------------TGTTGTTGAGTGTTATTTTGGTTAATCCTCATAAC--TGTTGTTTGTTAGGCttcatcctcattttacagaaaaggaa-cTGAAGCACAAAGATGTTAAAAGAATgattatgatctttttttttttggtcttttttgtcggtatgggggatcgaactcacgactgcctgcttgcaaggcaggcgcttatgccgctgagctaaatccccagccccctgattaTGATCTTTTTATAGCCTCATTTGCACTATGTGTAAATGTCATGAAAACTAA-----GATTTAATGCTATGCCAG---AAAATGGT---------------------TGTGGAAAGGCAGTGTGTGT-CAAGAGAACCTAAATGTTTTGTGGAAGCCTAAGTGGTGTACTTT-TTCACCAGCG-CTGTCTT--CCTGGGTCTTCAGGGAGTGGCAGAATGTGGCCTGTGGTCT-----GCTTCCTGGTACTACACTTTTGCT---GGCCCAGGGACTACAC--TGAGAACTGCTGGTTTGAGGCTGTTTCAGTGTTTCTTATTAAGTAGAGCTCAGAAGTGAGGTTCTGAGCCAGATGTgattggtgcatgcctgtaatcccagcactcaggaggctgaggcaggagaatctttatGAATTTGAgagcagtctgggctacagaatgagctcaaggccggcctgagctgcataatgagatcctgtctcaaacacacacacacacacacacacacacacaaaaggttaGTCTAACAAAAATAACGCTTTTCCCCCCACCCCAGATGATGTTGAATTCGAAGTATCATCTGACCGGCGGACTGGGAAACCAATTGCTATTAAACTAGTGAAGATAAAACCAGAAATCCACCCTGAAGAACGAATAAATGGACAAGTTAGTAACTTCaatgctttgtattttcttaggGCCCTGCATTTGCGTATCTTTCACGTTAGAAAAGGAAGATTCTTTCCCATCTCCTCAGTTTGCACGCAAGAGAGTTATAGTATATAAAGAAtactactttaaaattatatcagAAGCACTGGCATTTCTTgacctgaaataaaataatggtCAAGGCTGAA-TTGGGTTTTCTATATAACCCTACATCTGTACTTACAGTCAGTTTATGTACTGTAAGTTTGAAAGTTGGCAGCATGACATCCTCTTGTGGATCATATTAAAATGCATCCCTGTGTCTAGTATAGAGGATATTA-AATTCAGTTTATATTGCACAGTGCTGCTCCTGAAATGATTAgcaatggaaatttttttttttttgactggtAGGTTGTGTGCGCTGTCCCTCACAACTTAGAGAGTAAATCTCCAGCTGCCTCCCGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGTAAActtgtgtatttttcttaaaCCCTTTGCCTGATCCACCATGTGATCTATAAGCgtacttaaaaattcaaaatggaaaaCGTAAGCTAGTTGCTAAAATCAGTTGTAAATTTGGTTTCTAAGAGGCTTCAAGTGCAGCataatcaaataatttaaaaag-gaaaaatccatAGGAGTTCCAAGTGTCTTAGCTTGCCCAAGTGTGACCTTAGTTAGAACATTTAAGGTAAAATGCTCCTTTTAATCACTTTTTGGGGGGTTGTCGGG--TGGGACTTTTTTCTGGTTCA-AATAAGCACTGACTGCAGCTTTTTTGTTTGGAATGCCTTACataaaaaattgtctttttgaAATGTAACTATAGTCTCTGGGCAAATGCTTC--CGTGTGTAAGCTTTTTGAAGTTGGATTGCTGCTCAGCTGTGGACTCCCAAAAGTCATGAGCACTATGGAGGGGAAAGTATGTTTATTTGAGTAAAACAACTTACTTGTCATAAAgcatataattttaagaaatttggcTTTAAATTGCCAGTGTAAGAGGTATTTAAGTAAGTAAATCACAGTGTACAGTGAATATGCCTCTTGCCAAGATAGTAATAATAACTTATTAATTCACAGGAAGTGTTTTACCTGACTTACACCCCTGAAGATGTTGAAGGGAATGTTCAGCTGGAAACAGGAGATAAAATAAACTTTGTAATTGATAACAATAAACAGTAAGTTCTTTTCAAAATCTTTC-AATCTAAGtaatgcttttttgttgttttcacgTTAAG------TGAAGTAAG---CTGG-GCTgtaatctg------taatcccagcactcaggagactgagatggGAGTGATAAGAACTAAAGCCAGcataggttacatagtgagaaccctattaaaaa----aataagatggaaTTGGGTGTTTAGCTCTGGTAGAGGGCTTGCTGGCATTTgcaagccctgggtttgatcaccaGTGCTGCAAAAATTTGTAAACCTGCAca-gtttcatgattttttaaagtattttttagtCATAAGCTGAG-TCTTAGAGGCT--TGAATATTCTGTGACAGGCCCTATTTAAGTGTCAGA----AAGAGTGATTAAAACATGATCA

a score=56042
s chr3           103043431 2075 + 160039680 TTGTACTCTTTGGCCTATAGTATAATTTTAAGATAAAGCTTACTGATTTTTTTTTAAGTTGTAATCATACATTTGTATATTGATTGGTAAT---TAATGATTTTGTATTTGGGGGCTTT-----TTGCTTTAGGAGGCGTTTGGCTTTATCGAAA-GAGGTGATGTTGTAAAAGAGATATTCTTTCACTATAGTGAATTTAAAGGTGACCTAGAAACCCTACAGCCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGTAAGATGGGTCATTCACTAACTCTAAATTATTGCCCTTTTTAAAGATTAGTAGTGGATTATATATTTAAGAAACGCTTAAAATTATGTGACCCCTGCCCACTTCAACCTCTTGATTTAGGGTAAAGAAGTTGCAACAGATGTCAGACTATTGCCTCAAGGAACAGTCATTTTTGAAGATATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGGTAAATTGTCTTTATCAGCAATGTCTTCTTCTGACCAATCAGTA------CAATAT----TATGATGATACACTAAAGGTGGAGTCTGTTTGATTGATGTAGTTGTGTG-TAGTGGGGTGTATCTTTTAATAGGTATTTTAATTaaaaaaaaaaaaaaaacaaaaaacaaaaTAGATgctgatggtgtggttcagtggcagagggctgacctagcatgcaaaaggcccccagtactgcagaaaGAAAAGAGACACTAATGAACGGTAGGTTGATGGGTATGTTTTTGCTTATTTGATTTTCACTGAGTGATTAAGATTAAAAGAAACTGTTACCTGAACTGGGGAAGGTCCTACTGAATTGGACTGCATGTGCTACTTCTCTGTTCCCCCGTCTTACCATTTGTTAACTGGTGGGA-----AGTAAGGTGAAAGGCATCATTGCTGGATAAATGTGAG--ATCCAAAGGGCTGAAATGTTTTTCCTTAGCAGTTCTTGATATCACAGTGCAGTGTT---AACAACAGTGCTTGA---TTTATGGTTG--TCATGGGACCTTAGATGATGAAGCTTTTATATTGGGCTTA-TATTGTCAGCACTTTT-TTCCCCTTCAGGCTACTACTATATTATAAATAAGCTA--TTTACT--GTGTGTTCTTCTTGTTTGACTTAGAGCTAA-AAGGATGAGAAATCTCCAGCTAAAATCGTTTTTCCTTCTCATCAGAATGACCCATTGCCAGGACGAATCAAAGTTGACTTTGTGATTCCTAAAGAACTTCCCTTTGGAGACAAAGACACAAAATCCAAAGTGACCCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGACGTGACAAATTGGAACGAGCAACCAACATAGAGGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAGATGGTAAGTGTTTAAGCATTGCTGGAATTTTATCTGACATTTAGGGTTCAGTGATGGACTCTGATTTACACTGTTGGCTGGGAACTTCTTAGGCTGATGACTAGTGAATAAAGGTGTCTGTTCCCAAGCCTGGTAGCCTGTGTCCTAGTCTGCACTGATGGAGAGGCCAAGAAGAACACACAGAGGCAAGTTGTTAGAGGATATTTCTTGTAAGCTAATG--CCTGTTGGGAAGTCACTTTATTAA-GTAGCTAAGAATCCTACATATTTGAATTAGTTTGGGCTTAGTTCT--CTTAGC----TATCTTGGAAAGACatataaattaattt-taaattaGAAAACCAGATAAGGGGATTGCTAATGAAATGTGAATAAGACATCAGGAAATATATTTTCTTAAGATTTCCTCTGTGATGTTTAGTAAACAGTAAGTTAAACAGCACTAAATTGATTTCACCGCTTTTATGGTAATAGTTTGCTTTTTTTAAAGTG--------------AGTATATGTCT--GAATAGTATGTACCTGATTTGCTACTCAGGTATGTCTTATAAACATTTTGTAGAC-----TGACTTTTCTCAGGTATAGTTTGTATTTAGTGTTGTTTGGAATCATACTATCTGTAGCATGTCTCAGTGTTGGCAATAAAAACAGGTACCTTTTATT---TTtttggtttttttgagac
s HiC_scaffold_1 113270177 1728 - 233722169 TTAAATTCTTACTCTAATAGCAGTATAATATGAAAAGGCTTATTG-----TGTTTAAGTTGCAATCATAAATTCTTACCAAGTGTAATAATGTTTctggattttctgtttggtttttgtctGGTTTGCTTTAGGAGGCATTTGGCTTTATTGAAAAGAGGTGATGTTGTAAAAGAGATATTCTTCCACTACAGTGAGTTTAAAGGTGACCTGGAAACCTTGCAGCCTGGAGATGATGTGGAATTCACAATCAAGGACAGAAATGTAAGATAGCTC----------TCTTCTTCTCTGGCCTTTtga--------tagtggattacatttttgtGAAATAGTTGAAAGTTTTTGTGCCCCACCC-------CTTTTTGATTTAGGGTAAAGAAGTTGCAACAGATGTCAGATTATTGCCTCAAGGAACAGTCATTTTTGAAGATATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGGTACGTTATCTTTTCCAGAAGCATTCTTTTTTGCCTCATTAGTAATAGAACAGTGTGGTATATGTTG-CACACTGGAATTTTATTCCATACTATTAGTGTAGTTGTATAAGAGTGGAACATATCTT--------------------------------------AAGCACA-------CTGCAGTTGCAGTT---------------------------------------------------------------------------------TGGATGTATATTTGTTT---------------------------------------------------------------------------------TCTCCTCTTCAGTCCCTCC---CTGACTTCTGTT--TTGGTGGAAGAGGTAAGAAGATGGATGGCATTGTTGCTGAAGAAATGTGAACTATTAAAAGACTAGAAATATTGTTAAGTAAAATCTCTTCATACTAGAGTGTGGGATCTTAAACTGCAGTGTTAAGATTTTTATGGTTGCATCATGTGACAACCAGACATGAAACTTTGAAATTGAACTTAATGTTGTCAACacctttattttccttcaggaaacta---tattataaataatttgagtttgctctttgtatttttcttgtttaactTAGAACTAGGAAGGATGAGAAATCTCCACCTAAAAATATGTTCTCTTCTCATCAGAATGACCCACTGCCAGGACGAATCAAAGTTGATTTTGTGATTCCTAAAGAACTTCCATTTGGAGATAAAGATACAAAATCCAAGGTGACCCTGCTTGAAGGTGACCACGTTAGGTTTAATATTTCAACAGACAGACGGGACAAGTTAGAACGAGCAACCAATATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCTAGAGAAATGGTAAGTATT----CATTATTA------------------------------------TTGATT--------------GGACCTGTGTAAAATG------------TGAAGGGATTTGT---------------CTTACGTTC-AATTTGTACCACTAAA-------------------------------TTAAAG-----TTCTTATAAGTTAATTACCCTATTGGGAAGTTACCTTGTTAAGGTACTTAGGAACCACAGACATTCAAGCGAGTTTGGGGTGACATCTGCCTCGGCTatttatcttgaaaatatttGTGGAAAAGTTTGTAAGTTGAAAACCTGGACAAGATGACTGCTAA---------------------------GCTGTTTTGTGAGTCTGGTTCTCTGATCCTT---------CAACATGAAAAG---TGAATAGA-TTCAGGCCTGTTACTGTAACAATTAGATTTTCCAAAATTGTTTTCCTAAGATAATGGATATGTCCTAGAATGATGTGTGCCAGAATTGTT-------------------ATATTTTACAGACTCAGGTGAACTTTCTCAggcataatttatatttaattccaTGTGTGTTCATTCCATCTGCAGTACATCTTAATATTGTCATTGAAACCAGGTacattcaatgaaatttttaaatttcttaacac

a score=28967
s chr3           103046779 415 + 160039680 TTCAGGGTGTGATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGTTCTTCCACTTCAGTGAGATTCTAGATGGGAACCAGCTCCACATTGCAGATGAAGTAGAGTTTACTGTGGTTCCTGTGAGTAGCTGTT--GGGGAAAGTGTTAAGGGTTGGTATTCTGCTGTCTCCTTTGTAATTTTAATTTTGTTGATTTTGTTTAAT---TTGTAGGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAACTTCCCAAGGGCACGGTTTCATTCCATTCCCATTCAGATCATCGTTTTCTGGGCACCGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACTACAAGCCCAAATAAAGGCAAAGACAAGGCAAGTGTTAGGTGAT
s HiC_scaffold_1 113272597 415 - 233722169 TTCAGGGTGTAATCGCTGCCATGAGAGATGGGTTTGGTTTCATCAAGTGTGTGGATCGGGATGCTCGTATGTTCTTCCACTTCAGTGAAATTCTGGATGGGAACCAACTTCATATTGCAGATGAAGTAGAATTTACTGTGGTTCCTGTGAGTAGCATTTCAGAAGAGAATTTCAAAAGT-AGTTTTCTGATGTTTCATGT-CAGTTCTAAA---GTTAATTTTGTTTAATCACTTGTAGGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAACTTCCCAAGGGCACGGTGTCATTCCATTCTCATTCAGAGCATCGTTTTCTGGGCACTGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACCACTAGCCCCAATAAAGCCAAGGAGAAGGTATGGTTtatgtgat

a score=39539
s chr3           103049482 1775 + 160039680 AATAAATTTCTGTGGCTCTGCCAATTCTTTGTGTTAA--GGATTCCTAAGTTACTGTAATTATATATCTTCCTTCCCTTTTTCTGTTATCATTTGTTAGTGTTCTTGAGGATATTTAATTGTGTTTTATATTTTCTTTAGGAGGCAGAAGATGGCATTATAGCTTATGACGACTGTGGGGTGAAACTGACGATTGCTTTTCAAGCCAAGGATGTGGAAGGATCTACTTCTCCTCAAATAGGAGATAAGGCAAGATGGTTTTACTTACTTGAAGAAAGGTTAAAG---GTTGTCTTGATTATATTTGCTAGAGGATGGTTT----AAATTTTGCTA----AGTTTGGCTGCAGCATTTTTTCACTGGAAAGATGAAATACATAATAAAACAGGGTCTTGTAGCTTATGA--------AACATACTGAA-------TGATAGGTTTTTAGGTTTGAGTTCTT-----------TTTAGAGATGAGTGTGTGGCATACTTGTAATTCTAGCAGTTAGTAGGTAAG--TGCCACAACCACTAGATACAGTCAGACAAGTAAGCTAAA-------------AGTACTCACTAAAAT---AAAACCAGTATAAAATTAC--ACCAAAAATTTACATTGCCTACTTTTTAGACAGCCTC------TCTATAGAAATTAA---AACTACAAAGTGTACATTGACA--------------------GGCAAAACTTAAATCA---------TTTATGAATTGAGACAGCAAGTGC-------------TTTCTGTAAATTT-TTCTGTCAGAGTAATTACAAAATAGATCTGGAG-TGAAAAGCTTGGTCTGGGGGATGTTTTGGGTCAGCTTCTTAAAGGTACAGAGCTTGTGGAAATGACAATGATACTAACTATCATCCTCATCGTTTTGTAGGTTGAATTTAGTATTAGTGACAAACAGAGGCCTGGACAGCAGATTGCAACTTGCGTGAGACTTTTAGGTCGTAATTCTAACTCCAAACGTCTCTTGGGTTATGTGGCAACTCTGAAAGATAATTTTGGATTTATAGAAACAGCTAATCATGATAAGGAAATATTTTTCCACTATAGGTAAGGAATGCCTTTTGGGCAGCAAACTATTCCTATTATATTCTTTTATATT---------AACGTTTCAAAGA--------------------------------------------------------------ATTTAATATAGGTTGAT-----ACTTTTTGGTAATTACAATTTTTGAGACCCAGCTTTTCTATTTGT--AATTATGGCAAGTTACATACAGGAGTTAGGCATCTGCC-----------------------ATAAACATAGAAATGCATTTACCTGCCTTTACATATT------------------TTTATTA----------------TACATATTGGTACTGGTGTGATAATacagt--------------------------------------tatagcatatagtaaaaaatacgggttcattgaaccaaaacta-agtattttaattttg-atctaggttctcccacttaatatgtt---------actttcatcaga---------ttgtaactttttgatttctttaccttcaagctagaaatagtggt-------------------------agctcagtt-----------------------------------------------------------------------------------------------tataggttcttgattgggg--gggggtt--------------------------gttttaagga----tttaatgaatccgtac--------cttaaaacagtatcttaatatatgcagacctcccatggatgttg----gAAGGAGAAAAGGCTCCATGCTACTATTGATATTAGTGATAGTGGCTTATTTTAATGTCACTTTATTATCTTTTCCCTTTAGTGAGTTCTCTGGTGATGTTGATAGCCTGGAACTGGGAGACATGGTTGAATACAGCTTGTCCAAAGGCAAAGGCAATAAAGTCAGTGCTGAGAAAGTAAACAAAGCCCACTCAGGTAATGAGTCATGACTCCTATTCATCCTATGCTTTGACGGCAGGATACAGGGTC-------GGGAGAAGGATAAGGCCATACATGTTCTGTAACATTTGCTCTCAGGTACCC
s HiC_scaffold_1 113275105 2155 - 233722169 AAGAAATTTCTATAGCTCTGCtagttttttactttaaaagaat-----aGTTGCTTGTATTGTTTCACTCCTAAGCTTGTTTTTattgt-----------------------attccatt--------tcttttttttaggaggctgaggatggCATTATTGTTTATGATGATTGTGGAGTGAAACTAACAATTGCTTTTCAAGCTAAGGATGTGGAAGGATCTACTTCTCCTCAGATAGGAGATAAGGTAAGATAAATTTGCTT---TAATTGGAGGTTAAAGATAGTCATCTTAATCAAAAA-GTTATAGgatgatttctttaaattttattgttttaattaagattttgttgttttgcatttgGTAGGTTGAATACATGATCAA-------CTTTCTACTTAAAAGCAGCTCCAAAATTTAGAACAGGGTCTAACAAGCTTTTTGTTAGAACTTCTTGAGGAATCAGATTTAAGCATTAG-ATAGGACATACTT--AAATCCACTAGCT--TAGATAAGACTGATAATATTGGTAAAGAAGTTTTAATGAGTTA-TTAAATATTATACTATATAGGACTCCATAGGGTTTTGGAAACACTATGAACATATTTACCAATGTATGAGATT-CTAATTTGGTGTACAGTCTAGCACAGTTCATAGTGCTTAAGTAAACgataatatttacataaatattttactgtCAATCTTTTTCGGAAAATCCTATTTTAAGAAAGAATTCCTTAAAATGGGAC--TAAGCGTAGGAATGTTAGTTTTGGTGGAAATTTGTTCTATGAAAATAATTACTAAGGATTTCTAGAAATGCAAAGCATGGTATGGAGGA-GTTTCAGCTC-TCATTTTCAGATTAAAGAACCCATAGAAGTAATAAAG-TATTGATGATCCTATT-----TTTCACAGGTTGAATTTAGTATTAGTGACAAACAGAGGCCTGGGCAGCAGATTGCAACTTGTGTACGACTTTTGGGTCGTAATTCCAACTCCAAGAGACTCTTGGGTTATGTGGCAACTCTGAAAGttaattttggatttattgaaaCAGCCAATCATGATAAAGAGATCTTTTTCCATTACAGGTGAGGAATGTCTTTTGGGAACTTAAAGCTTTTCATTGT----TGTAACATTAGAGCCAGAAATGTTTCAATGGAAAGTGGGGTGCAGCTCATTGGTAAAGCATGAGCAGGGGCCCACGTTTGACTCCTGTAGCACACTAAAAAAAAGTTGTTTATGCATTTttggttcattat-ttttttaaattccagattTCATATTGGTAAAATTACGTAAAGATACATTCTAAAGTTAATCATCTacctctgtataggaaatatgtGACCAAAAGATAGAAAAAGGCCTGTG-CTGTTTTTGAATATTGGAAAAGAGCCTTTCTGCTTCATTGAAGAAATACGTTGTCTTATATGTTGATACCAG-ATAGTTAtacattgggttttttttttttttaagatagtttTACATTTGATATATAGCATAGTGGTTAAGATGTAAGCTCTCAGAACCAGAACCATATTGTTTCAGTTTTGAATATGGGTGCTATCATTCATGATGTTGGTATCATAATTTTTGTCAAAGAATTCACTTCTTAGTATTTTAGTTCCATTATCTTGAAGCTGAGAATAGTGGCATAGTAAATCTCCAACTTACAAATGAGTTCTGTTCCGAGAGAGCATGTTAAGTAAGATTTGCTTGTAATCCAACAGTTATACCTGTGAAAGTGTGCAACTCAAATGGCAGGGACTGCTATACTCTTTTATAGAGGATGGTGGCTGGGAATGGAAATTCTCTGGCTCCACCACAGACCTCTtgagttttaaaagtaatttaaatgaaTCAGTATATAAAGTACTCAAAACAATATC-CATCATAAGTAACCATTCCatgaatattgtaaaaaaaaaaaaaaggctgcttGCCACTGTTGATGTTTGTGATAATGTcttatttaaatgtcatttt------ctctTCCCTTAGTGAATTCTCTGGTGATGTTGATAGCCTGGAACTGGGGGACATGGTTGAATACAGTTTGTCCAAAGGCAAAGGCAACAAAGTCAGTgctgaaaaagtaaacaaaactcaCTCAGGTAAGAA------------ATTCAGCTTATGCTTAG--TGGAAGATACAGGGTATGTTAGGGGGAGGAAGACAAGACCCAGCA----CTACATCTGCTGTTCCTTGGTATCC

a score=13747
s chr3           103052769 690 + 160039680 TGAAATTGCTGAGTGGTAATTATGTGTGCTTTTGTTTTGTAGTGAATGGCATTACTGAGGAAGCTAATCCCACCATCTACTCTGGTAAAGTCATTCGCCCTCTGAGAGGTGTTGATCCAACACAGATTGAGTACCAAGGAATGATTGAGATTGTGGAGGAGGGTAAGCACAGCCCTGAC--CCTGGAGTCTGCTCTGCC------------CTCGCACGGTTTTAATGTGTGATGGGCTCGTTTCAGTG--------------------------------CTTCAGGTG----------------------------------------TCTTAGGAGC------------------------------------------------AGAGGGACCCTGCTC---CTCCTGTGCTTAGGCTTTAGTTCTATAGACTCCTTGAAAATGAGGTCACCC------------GGGATGAAACTGAGC------AGCAAATGATT------------ACTATG-----CTGACG---------------------------------ATGTTTAATGTT-GAGTGATGATAATCATACTTTTTGTTAAATCCAAGTGGTCATTTATGTTAGTCACTATTCAGTTTTATGAATACTT----CCTTTCCTGAAGTATG-CTTG--CTGTTCCTTAGTACCTTGGGGTCCTCCAGATCTT---------GGCTCTCTCCATTTATTTACTTGAATAATATTCTCCCCATCTTCAAACAACCAATAGTTTTGGTGCTTATCTTTTTTCCAATAGTTGCCACCCAGAA-ACTTTATTTGATAAGTATGCATCATATAAATGTGATAGAAATAGTAGGGAATGCTAGATAA-TTAAGATAACAGT-TTAAATAATGGTAGAATAG
s HiC_scaffold_1 113278257 882 - 233722169 taaggtggttgaatgtgatGTATACATGCCTTTGTTTTATAGTGAATGGTATTACTGAGGAAGCTGATCCCACCATCTACTCTGGTAAAGTTATTCGCCCTCTGAGAAGTGTTGATCCAACACAGACTGAGTATCAAGGAATGATTGAGATTGTGGAAGAGGGTAAGCACTTCCCTGATGGCTTGTAATTTTGTGTGcctgttgatgagcattttgaaGGTTTTAAACTCTG--GAGTTCATTACAGTGTGCgggttttttaaaagttagattaAGGAGGACTTTGGATGTCACAGTGCTttcctggcatgtgtgaggcttTGTGTTCAATCTTAGTAacaccctccccctccccccacaaaagaaaacacagacagaAACTGAGTTAAGAggagtctttctctctcctctatgcctggtttttatttttata-----tttagaaatgagGTCAGTCTGGATTTAAATTGTGATAAACCAGTGCTCTGCGAGCATATGATTGAAACATAAGCAACTATGTTTCACTGACACAGTCTCAGAACACAATCTCAcactaaaaatatacatttaatatcAGAATGGTAATAAACACTTTCATTCTTA----------TTCACTGGTTATATTAACCAttgagttttataaatatttttagtttgtgCAAAAGTTTGACTTGTTTTGTAATGTAAGATTCTGTGGAGATCCAACTTTTCATCTACAGGGATCTCTCTGTTT-TCAACTTAATACTTTTTCTGCCCATCTTCAGG-----AATGTCTTACGC-----CCTTTCCTCCAATAGTCATAATGAAAAAGACTTTATATAATC--TGTGTACTAAGTAAGTGAAGTAGAAA---TAGGGAACTCTGGATGATTTGAGATTACCATATCACATAATAATGGAGCAG

a score=18183
s chr3           103054626 395 + 160039680 TTTAGATTTTGTACT-GTTTTGCTTACAGGGGATATGAAAGGTGAAGTGTATCCTTTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGAGAGTGTCAAGTTCCAGTTGTGTGTACTTGGCCAAAATGCACAAACTATGGCCTACAACATCACACCCCTTCGTAGGGCTACTGTGGAGTGTGTGAAAGATCAGGTAATTAAGTGCTATGTCTCTGGATGTGCAGT------------------CTGTCCTGAACTTGGTC-------------AGGGAAAGTCATCAGC---CAATA-----Tttactt--------------gcttgcttg-cttgct--tacttgttt-----Atttttaagacatg-gtttctctatgctgttttggctgatctggaattcaccctcttgagta------ctggcatttaaactttcatggatGTC
s HiC_scaffold_1 113281542 454 - 233722169 TTTAGACTTTGTACTTGTTTTCGTTACAGGGGATATGAAAGGTGAGGTGTATCCATTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGAGAGTGTTAAGTTCCAGTTGTGTGTCCTGGGCCAAAATGCACAGACTATGGCCTACAATATCACACCCCTGCGTAGGGCCACAGTGGAGTGTGTGAAAGATCAGG----TAAGTACAGCACTTCTACATCTGAAGTTGATCTTTTTGAGAATTGCTAACCAAAGCCTTGCCTGTTTTTTAGCCTTGGGAGCATCAGCAGCATTCATTAGGGTTTTTACTTCATTCCATAAAGtggtttgcttgttttgcttctatttgttttgttgttttttgagacaggcatctcactatgtagttcaggctggctttgaa------ctcttgtGTAGCcccgctggccttgaactcatcatggtagtc

a score=175230
s chr3           103055120 5378 + 160039680 [encoded data, 6282 characters]
s HiC_scaffold_1 113283404 5840 - 233722169 [encoded data, 6282 characters]

a score=6103
s chr3           103055423 88 + 160039680 GAGCTACAGGCAGGAGATGAGGTGGAATTCTCAGTGATCCTTAATCAGCGCACTGGGAAGTGCAGTGCCTGTAATGTCTGGCGAGTCT
s HiC_scaffold_1   2081287 87 - 233722169 GAGCTGCACGCAGGAGACAAGGTGGAGTTCTCAGTGATTCTTCACCAGCGCACT-GCAAGTGCAATGCCTGTAATGTCTGGTGGGTCT

a score=7735
s chr3           103056345 136 + 160039680 GAAGGCCCCAAAGCTGTTGCAGCTCCTCGACCTGACCGGTTGGTCAATCGCCTAAAGAACATCACCCTGGATGATGCCAGTGCTCCACGTCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGTAT
s HiC_scaffold_1   2081376 135 - 233722169 GAGGGCTTGAAGGCTGCTGCAGCCCCTCGAGTTGATCGATTGGTCAGTCACTTGAAGAACATGACCCTGGATGACGCCCATGCTCCTCACATCGTGGTTCTTAGTCAGCCAA-GGGACCCAATTACTCAATGGGAT

a score=12465
s chr3           103056875 234 + 160039680 TTCTTCATAGGGATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGTCATTGACTAACCACGTCCACAAAGCACATCATTAATTCACTATGGTCGAGTTGGGGGGATTCTGGTGAAGGGTTCTGAATATCTTTCTCTTCATCCCTCCCAAAATCTGGAATACTTATTCTATTGAGCTATTACACCAGTTTTAACACCTTCCTCGTGTTATGTTTAAAGAAAAAAATAAATAAA
s HiC_scaffold_1   2081497 216 - 233722169 TTACTCAATGGGATTTGGAGCAGGAAGAAAGATACGTCAGGGTGGTGTTACTGACTAACTGTACCCACAAAGCACATCCTTAATCCTGTATGATCAAGCCGGGGAGATTCTGGTGAAGAGTTCTGAG-GTCTCCCTCTTCATCACTTCAAAAATCTGGAGAACTTACTCTATTGAACTATTTCACCAGTTTtaacacc-----------------aaaaaaaagaagaaagaaa

a score=18687
s chr3           103062015 557 + 160039680 AAGTTATTTAGAATCCATAAGCTCTACTTTCTGTACTTTTAAGCTTAATCTAAAGAACCTTTTGTAGTTTCCAATTAAACCCAGAGCCAAGCTCCTTGGAAAATATAGGAGCCTAACAAGGACATGCATCAGTATATTGGAGCT--------------GGAAGTGAACTGGTATTCACAGCCT-CATACAGCTTCTACACCAAGTCTAAATTG---------------ACATTCTTGACTTAGCAGGTCTAGAGTTGTATGAGTGTGTAAGCTGAGTAATAGTAGCTGGAAGGATTTTGTA-AATTTACCACTTCCTTTTGTG---TGCCAGCGTACTCCTC-CAGAAAGCTTGCTTTGCTTATTATGATCAGCTGCCTGCTCTTTGTTCTAGGGAGCAAATTAAGCGTGTGAAAGATTCTGATGATGTCCCCATGGTGCTGGTAGGCAACAAGTGTGACTTGCCAACAAGGACAGTTGACACAAAGCAAGCCCACGAACTGGCCAAGAGTTACGGAATTCCATTCATTGAGACCTCAGCCAAGACCCGACAGGTATGCTAGAGATTCAAGCAAGTGTGAGTAAGTGTTTAA
s HiC_scaffold_1 113292165 546 - 233722169 aaaatgtttaaaggcagaaaactttattttttatacttcagACATTAC----AGTGATTTCTGGTTGTTT----TTGAATCCAGAAGCAAGCT--TTGGA--------GAGTCTAACAAAAACATGTGTCAAGATAAGTTAGCCACTCATTTTCATTAGGAAGTGAACTG----TTACAGTCTTCCTAAGGCTACTGCATCACCTCTCAACCAGTCTGTTTGTATACAAGATTCTT---TTAAGTGGtcaaaaaa---atgag-----aaactcaa-aatagaagCTAACAGGGCTTAGTACAACCTGCCAGCTTCTCTTTTGCCCTACCAATCTATTCCTTtccaaaagtttatttttcttataa----------catATTCCCTATTTTAGGGAGCAGATTAAACGAGTAAAAGACTCAGATGATGTACCTATGGTGCTGGTAGGGAACAAGTGTGATTTGCCAACAAGGACTGTTGACACAAAACAAGCCCATGAACTGGCCAAGAGTTACGGGATTCCATTCATTGAAACCTCAGCCAAGACCAGACAGGTATGATAGGGCTTCAAGC--GTCTGTGCAAGGGtttaa

a score=3900
s chr3           103062371 113 + 160039680 AGGGAGCAAATTAAGCGTGTGAAAGATTCTGATGATGTCCCCATGGTGCTGGTAGGCAACAAGTGTGACTTGCCAACAAGGACAGTTGACACAAAG---CAAGCCCACGAACTGGC
s HiC_scaffold_1 154273120 116 - 233722169 AGAGAACAGATTCTTGGAGTTAAAGACACTGATGATGTTCCCATGATTCTGGTTGGTAATAAATGTGACTTGGAAGATAAAAGAGTTGTAGGAAAGGAACAAGGTCAGAATCTAGC

a score=15185
s chr3           103063195 373 + 160039680 CTAAGTCACCCCAATTTATCAGCTATTGATT----------AGAATCAAATCCACACAGAGAGGTGGAAATGAGAGGTTACAACTTGAACTGTGCCTGTTGTTCGTTAGTTTTTTTGTATGTGTTTTTTTTTTTCTTTTACTAGGGTGTGGAGGATGCCTTTTACACACTGGTAAGGGAGATACGCCAGTACCGAATGAAAAAGCTCAACAGCAGTGACGATGGCACTCAAGGTTGTATGGGGCTGCCCTGTGTGCTGATGTAGTAAGGTGAGTGTGTGCTCTTACATTGGAACCATAGCTTCTACTTAGCATTAGGCAGTTCAGAATAGTGCCAGCACTACTGA-CTTTTGCAACTT---AAATGAGAGTTTTCATATATTTGCAA
s HiC_scaffold_1 113294015 379 - 233722169 CTCAGTCACCCTATTTTATCAGCTATTATTTTAGTAATTGAAGCTTTAAATCcgtataaagaaatagaaatgaaaacttacaATGTGGATTGTGTCAGTTG--AGCTGGCCTTTCAGAGGAAAggattctttcttctttcataggGTGTTGAAGATGCATTTTACACACTCGTAAGAGAAATACGCCAGTACAGAATGAAAAAACTCAACAGCAATGATGATGGGACTCAAGGTTGTATGGGGTTGCCATGTGTGGTGATGTAACAAGGTAAGCGTGTAATCTC---TTGA---CATAATTATTATGTAGTGTGAGGCAGTTGGGAGGAGTGTTAATGTTACTTCTCTGTTGCTATTTAACAAGTGTGACTttgtatttaattataa

a score=57684
s chr3           103064101 3829 + 160039680 [encoded data, 4693 characters]
s HiC_scaffold_1 113294450 4025 - 233722169 [encoded data, 4693 characters]

a score=4133
s chr3           103069916 69 + 160039680 AGATCTTGTAAATTTATGCTTATTTTGCCTGTAAAATTTGAGAAGGTTGACATTTAAGTTTAAAGTTCA
s HiC_scaffold_1 113302187 69 - 233722169 AGATTTTGCAAATTTATGCATGTTTTGCCTGTAAAGCTTAAGGAGTTTGACATTTAATATTTAGGCCCA

a score=74556
s chr3           103073794 6037 + 160039680 [encoded data, 7362 characters]
s HiC_scaffold_1 113304006 6650 - 233722169 [encoded data, 7362 characters]

a score=29805
s chr3           103080572 1873 + 160039680 GGGAATAGAAGTTCAGAGAATGTAAGGAGCGTGAATACAATGTCACAGGATACAGCTGCCACCACCTGAGTTCACTGTAA-CAGCTGGATTGCTGACTCTGTTCACACCAGACCACTTTGGAAGGAGTGTGTTATGTTGAAGGCCTTCTAATATATTCCCAGCCTTGAGTCCCCTGTACTAAAAGCGG----------CCTTCGAATTTGCTGGGTACTTTCTTCTTTCACTATGGTAGTATCTTGTTTCTGACAACCAGTCCATATTTTAATTTTTTACTTTTTTTGTCCTCAAAATAAACCAGCATAGTGAAAAATCCATCTATTCCAATGGAACTCCTGAGGAGGACCAAGCTAATTATTATTATTATTTGTTAATTTCAAACCCAGAAAAAGGCGTTTCCAAGGACGGAAGACTGTTAATTTGTCCATTCCACAAAGTGAAACATCTTCTACCAAACTGTCCCACATCGAAGAATTTATTTCTTCATCCCCAACCTACGAGAGTGTGCCTGACTTCCAGAGGGTGCAGATCACTGGAGACTATGCCTCGGGGGTGAGTCGTGCTTTGCCGTGCAGATGT-------------CCCCAAAGACAGACACGTGCAGCTCCATGCTGTCTTGCCTTCCTGTGAAAGCGGGTATCGCTTGCGTCACTTGCCCTGCTTCCT--CTGCATCTCAGTCCTAATGAATGTCACATTCCTGTGTTGCTCC-GTCATCCCACACAATGTCTTCTTTATCTGAA---------TTGCTAATACACTGACACCACGAAGAAGGAAAGGATTCACTGTAGATAACCCAGACAGCAGTGGACAGACTG-GGCAAATGGACTAAAGCGAGCAGCAGGGAAGAACACTTGGTTGTAGCTGACTGCACCATAAAGTAAAAACAGAGGTGAGGGGATGAGGGCGGAGGGCACTGCAGGTTAGCTGAgcttgccaaggaggctggaggcctgagttcaagccccagcttccacatggtggtggagagaaccaactcctgcagttgtcctctgacctgcatatatgcaccatggcacgtgcCCcaaacaaacaaacaaacaa----acaaaTCAAGGGAAATCTAGCGGAGGGggtgctggaggaatggttcagcagttaagagcactgactgctctggcagagaacctgggttcaattcccagcacacatgtggtggctcacaactgtctggaattccaatcccaagggatgcaatacctttgaccggcccgccccaccatgggtatgattgtggtctcacacacacaagcatgcaaaacattcacacacataataaaaaaaaaAAAAAAGAT-AAAGACGAAAAAGAAAATTCCACCGAAGC--CATTGTCTTTAGACCATATAAAGCCCCCGGGGTTTGTTGCAGTAGCTTACACAGCAGGTATCCCTTGGAGTGGATTCTAGTATGTCACGGGGATAC-TGAACTCAGGTTACTAACAGTGTGCCCTGCTTGTCTTAT-CCTAACAGTTGGCCAGTTAATAAATCTCTGCTACAGGGACTTGCAGTATCAGCACCATATTGGTGAAACTGTTATCGAGCGCTCAGTCTCTGCTCCAAATACGGATTCCGTGCCTATGCTGAGCCCCTGCCTCATGTAACTGACCCAG-CAGGGTAAGGCCTGAGACATTCCCAAGGCTCAGTGTGCTGAAACACAAGCCATTCTTGTCTGTTTATTTTCT----------TCAGTATGGTAACCAGGGCGCCGAGCAGTCGGCAGGA-----------------ACAGACGGTAAAGAGCTGACATGAATTTCTTGATGAAATGTTAAAGACGTGATAAACACAATTTGGGAAACTCCA-GATTTCAAAGCTTA---AAGCTCAGGAGACACACTTGGCACCCGTGCGCTCAGGAGTCACGAGAACAGAAAGAGGAGAGAAAT
s HiC_scaffold_1 113310943 1563 - 233722169 GGAGATGAAAGCTCAAA-ATTTTAAGGACCATGA-CAAAATAACACAGATAGTAATTGGCACCACTGGTGTTCTTTATGGTCCCCTAGACTGCCTGTTTTGC-AGGAGTGAATTGCCTAGAAAGAATGGTGGCATGCTAAACACCTTCTAGTATGTTCCC----TAAGGTCCACttttataaacacaaaaaagTGAACCCTGTCAGTGTTTTCAGTGACATCTTCTCCCTCACTGCTTATATCCTGTTTCTGACACCCAACCCACATTTTAGTTTTTCACATTTT--GTCCTCTAAAGGA-----TATGGTGAAACAGCCCTCTATTGTAATAAAAGCCCCGACTTAGACAAAGCTAAATgctcttcct---ttttaatttcaaaac-agaaaaaggcgTTTCAGAGGGCGGAAGACTGTGAATCTGTCAATTCCACTAAGTGAAACGTCTTCTACCAAACTGTCCCATATTGATgaatgtatttcttcatctgcaacCTATGAGACTGTGCCTGATTTTCAGAGAGTGCAGATCACTGGGGACTATGCTTCTGGGGTAAGTTGT-CCTTGTCACTCAGACATAGGTGCTGAGAAGCCACTCAGCTTGACATGTCTAGCT----GCTGCTTCTC-------------------TCACTTGTGT---TTGTTATATTTCATTGCTGCGTTACAGTACAATATAGTGTGtc-tgtctgtattgcttttaACATCCCATgcaatttcttctctttccctagtttttttttttttaatg----gagaatATGTAGTAGAA-----TGCAATGTATGTTCCCCAGGATACATTGTACAGATTTTGGCAACAGGACCAAAGAG-----------------------TCTCATTGATGACATCATAAAACAGGAAAGGGAGCCATGGCACGGG-------------------------AGCTCTTGGGGAAAGATGGA--------CTCAAG---------------------GGAGA-----------------------------------------------------CCTCGAATAAAGAGAAAGGCAATAGCACAAACCAAAGAAA--------------------------------------TAAGATCA------------GTAGAAAG---------------------AAAggtag------------------------------aagagaagaaaaa------------------------------------------------------------------------------aagagaacaaaataagatGAAAGACAGGTTAGAAAATTCTCATGGAGTATCATTGTTTC---ACCA-ACTGGCCTCTCCAATTTTATTGCAGATGCTTACCCAGTATATTATTGTTGGAACAGGCTCTAGTATATCACAGTAATTTATAAACTCATGTTACTAACAAT---------TTGTCCTATGCAGAACAGTTGTTCAGTTAATAAATCT--GTCACATACACTTGCAGTATCAGCATGATATTAGTGAAACTGTTCTTTAGTCATCAGTCTCTACTCCAAATATAGATTTAATGACTAGACCTAAACCCTGTCTCATGTAACTGACCTAGTCAGAGTAAGTCCTAGGATATTTATAAGTGCCAGAGCAATGAAATGCAAACcgttcttatttatttgtttgtttatttatttatttatataataacaCAGGTGCTCTGCAAATGGCAGGGTTTTTTAAATGGCAGTTTTAGAtactaaataatttaaa-gaaaattttaat--agtgCTAAAAACATGGGAA--ATAGTTTGTAGAACTCCAGGGTtccaaagaatatataaattt--gGGACAATCTTGATACCTATgtacttagaaataaaaata--aggaaaaggaaggaaat

a score=15171
s chr3           103085051 441 + 160039680 CAGAAACAAATGCAAAACTCATAGGG--AAGATTTCTACTGCAGGTAAGGTATGGTACAGAATTAAAAGAGGTAGGAAAAACGGCGTCTTTCCTGCAGAGAgtcccagggtcccagggtcccagggCAGGAGGAATCAGCAGGGCAGGCTGGACAGGCTCAACGAGGCCACAGCACACAGGAAAGCCACAACTATGA------GAGGTCAGCCTGTC-----CACTTTCTTGGGTCTCACAGGCTCA-------GCTCTGACACTTTCTTGGCAGGTAACCGTTGAAGACTTTGAGGTGGTTTGTAAAGGTCTCTATCGGGCATTGTGTATACGAGAGAAATACATGCAGAAGTCATTCCAGAGGTTCCCCAAGACCCCCTCCAAGTACTTGAGGAACATTGATGGCGAAGCCTTGGTAGGAAACGAGAGCTTCTACCCAGGTAACCGAGTCTCTCATGAA
s HiC_scaffold_1 113317276 421 - 233722169 cagaaagaaatgcagG-CGTATAAGGGAAAGATTCACAGGGCAGGTGAATTATGGTACAGA---------GGAAAGAACACTGG-------------AAAAGTGCCATGA--CCTGCTTTCCGGAGCAG----AGTCAG--AGGCCGTCTACAAGGACGCAGAGAGGC-GCAGC------GAGAACCTTAACACCGAAGCGCTGAGGT--GCCTGAAGGAAGCGACCTCCAGATTTTCCCAGGCTGACTTTGGCATTCTGACGTTTTCTCGGCAGGTAACAGTTGAGGATTTTGAAGTGGTTTGTACAGGTCTGTACCGGGCATTATGTATCCGGGAGAAATACATGCAGAAGTCATTTCAAAGGTTCCCTAAGACCCCCTCCAAGTACTTGCGGAATATTGATGGCCAAGCTTGGGTCGCAAATGAGAACTTTTATCCAGGTAACTTGTTCCCTtataaa

a score=25460
s chr3           103088176 466 + 160039680 AGTTAAATAATGTTGGAC---TATAACTGATGAAGTATGAGATGACAAACGAATGTAATTT-GCAATATTTCTTATTTGGGTTATTTTTTACATGGTCATTCCTCCTATGTGCTGATCTATTACTCTGTGTTTTATTGAAAAAGTATTTACCCCTCCTCCGAAGAAGGGTGAAGACCCCTTTCGCACAGAGGACCTTCCTGCAAACCTGGGCTATCACCTCAAGATGAAAGCTGGTGTGATTTACATCTACCCTGATGAAGCGGCAGCCAACAGAGATGAGCCCAAGCCCTACCCTTACCCAAATCTGGATGACTTCCTGGATGACATGAATTTTTTGCTTGCTCTAATTGCACAAGGGCCTGTGTAAGTGTTTACCGAGATCTGAACATTAGCAGCCAGTGTTACTGATGGTCATAAGAATGCTTTTCACATGCTTATCATTGTCAAATACTGCCTTCAACTCCTTCAT
s HiC_scaffold_1 113323420 459 - 233722169 agataaataaagttGAATAATTACAACTTATGAAGT-TTAAATGCCAGGCGAATGAGATTTTACAGTATTtcatattttgcta--tttttacatGATCATTTATCTTCTGTGCTGATCTAATACTCTGTGTTTTGTTGAAAAAGTCTTTACGCCTCCTCCAAAGAAGGGAGAAGACCCCTTCAGAGCAGATAACCTTCCTGAAAACCTGGGCTATCACCTCCAAATGAAAGATGGTGTAGTGTACATCTATCCTAATGAAGCAGCTGCCAGCAAAGATGAGCCCAAGCCGTATCCTTACCCAAATCTGGATGCCTTCTTAGATGATATGAATTTTTTGCTTGCTTTAATTGCCCAAGGACCTGTGTAAGTGTTTTACAAGAGCTAAAC---AACCATCAGTGTTACTACTGATAGTAAGAATA----TTAAGTGCTTATGATGTTCACATGCTATACT-AAATCCTTCAT

a score=17566
s chr3           103089332 1020 + 160039680 ttgttttgttttgagacagggtttttctgtgtaaccctggttgtcttggaactcactctgtaga--ccaggctggccttgaacttagagaac--ctcctgcctctgcctcctatgt-ccaggatcacaggtgtgtaccaccat-cactgcccggctTCttttcttt-------------tttttaattatgtttatgtgcaagtgtctgcatgtgagtgcagatcctatagagaccagaggtatcagatcacctggcccagtggttacatgtggagtggtgagatgctacatataggtgctaggaaccaaactcaggtcttctTAACTACAGATTCCTCTCCCCAGGGTTCCACCCTACCCTGAAATACCTTAATTACAGTTTAAGGagttgaagcatctgaaagtggagggagccagtaattagctcaatgtcacacagtgctgg----accaggatg-gtgcccaagtctacggactccacagccagggcccttacccttgacctacacAGGCCTCATAGATTTTTAAATGCCATCTCTAGTGCTCCCTCATCACCATGTCCAGCTCT--------------------------GATGGAAA------GCTGGGTACTTTTTCAGTGGGATTAACTGGAAGAAAGC----AGTATCTGTTCCTGCAACCACTCCCTCTTATGGGTGAGAAGAGTCCTGGAGGCTTTGAAATACCATTTTCCTTACATGTCGAGAAAGA--TGCTTAGGATCCTGTGTGTTCACTTTCCACAGTAAGACTTATGCTCACCGCCGCCTGAAGTTCCTCTCCTCCAAGTTCCAGGTCCATCAGATGCTCAACGAGATGGATGAGCTGAAGGAGCTGAAGAACAACCCCCACCGGGACTTTTATAACTGCAGGAAGGTAAGTGTGTCAG---CTCAG----AGCTGCTCAGAGGGGACACCTGTGTGGAGACTTCT--GAGGGACCAG----ATGCCGCTTGCTGAGGAACCTACAACTTCTGCAGGTTACGTGGATTGTAGTGAAGGCAGGTAAATTATATCTAGCAGATTTGAAAGGCCATG-CTGTTGCTTGTCGaagagagaaa
s HiC_scaffold_1 113324029  930 - 233722169 ttaattttttttaaggtagctttttgctatgtagtgcaggctggtctcaaactcact-tgTAGCTCCCAGGATGGCCTCAGAATCAtagtactcctcctgcctcagcctcctaagtgctaggattacaggcatgtatcccCATGCTCAGCCAGGACCCTTAACTTTGAAGGATGCTGCCTCTCcagtgatttttgtgtgt--ttgtatgtatgtttgtttgtgttttat----------------------------------------tttgaa-----------------acaggttctcactatgtagctcaggctggcttt------gaattcactatgtag---tctaggctggcctcaaat-------ttgcagtc----------attctcctgc-----------------------ctcaacctcatg-agcgctgggattacaagaatgtgTCATCATACCT---GGCtccac------------------------------------tgattttttaaatgccatCCCAAGC-CCCTCTTACTATTGtatccaactttatttttttcctttttaagacaattttgatgaaaaattagAGCTCAATACTTTT-CAGTGAGGTTAACTGCAGAGGTACCTGAAATATCATTTGTTATAAAAATTGTTTCCTGTGGGTGATAAGGGTCCTGATGGTTTTacaattacatttattttctgtaaggATGTGGAGTTTTTtagaattatataattttatttttcacagaaagACTTATACCCATCGGCGCCTGAAGTTCCTTTCTTCCAAGTTTCAGGTCCATCAGATGCTCAACGAGATGGATGAGCTAAAGGAGCTGAAAAACAACCCCCACCGAGATTTTTATAACTGCAGAAAGGTAAATAGTTTTGCTTCTCAGAAGTAATTTCTCATAGAAAACATTAATCCAGCAATtttcaagaaggaaaagaagaatgacACTTTCTGATTAATCTAAAATTTTTGAAGGTTTAGTGG-TTTTAGTTAAAgcagaaagatta--------------aaaatgtcATATCTATTGTTTGCTCTAGAAAAAGA

a score=36701
s chr3           103090904 948 + 160039680 AGACGCAAACATCTTCCCTACATCCTGCTCACATCCTGGCTCACATTCTTGCACAG----GTGCACAGAGTACACAAGTGGGTCTTTACCACTGGGCCACCTCTACCGACCATCAGTGTGATCAGTTCTCACCACTAT---CTGTCTCTCCCTCCTTCCTCAGTGGGGTCTGCAGGCCTTGTGATCACTGACGGGG--GTATACAGAAGGCTGATCGCTGCATTTTCTTTCTCTGAATGTGTGCCTAGGTGGATACTCACATCCATGCAGCTGCCTGCATGAACCAGAAGCACCTGCTGCGCTTCATTAAGAAATCTTACCATATTGACGCCGACAGGGTGGTCTACAGCACTAAAGAGAAGAGCCTGACTCTGAAGGAACTTTTCGCTAAGTTGAATATGCATCCCTATGACCTGACTGTTGACTCTCTGGATGTTCATGCTGTAGGTTGGGAA--GATGTTCGTTTTACTCGCTCTAATGGCAGAGAACCCCAAATGTCCCAAGCC----GTCCCTCCCTTAGCACATCCCTCGTAACCCCTTGGCTACTGTGATGACTGAAAGCACACCTGATGAGTTTTGAGGTATCACTCAC----------CCTGGACTTCATTCTTAGAGCCCAGCCTCTTTCCCTGAGATTGGTCTCCTGTTCTGCTTGGTTGTCCCTGGGGACTCTGCTTCCAGGAAGCTCTGATAATCAAAATTTCTGCTCTTGTTTCTTCGTTCAGGGACGCCAGACGTTCCAACGTTTTGATAAGTTCAATGACAAATACAATCCCGTGGGTGCAAGTGAGCTTCGGGACCTCTACCTAAAAACAGACAACTACATTAATGGGGAGTATTTTGCCACTATCATCAAGGTGAG---------ACAAAA---AAAATACTTGGTAAGGTTCATGAATAGg-------ggaggagagaaagacaggaaagaaggaaggg--agggagagaagg-----gggagggggaggggccacaggg
s HiC_scaffold_1 113327862 933 - 233722169 AGAAACAAGCATTATCATTGCATC-TACCCAAATT---GTTCTCTTTCTTGCACAGACAAGTGCCTAAAGT----------GTCCTTGTCAC-------------------ATCAGCT--GTTAGCTCACGCCCCTGTTGTCTACCCCTTTTCCCACCCACAGAGGGATTTATAGGTACTGTGGCCtctaacaaaatagtataactaGAGCTAAtttctgggttttatttctctgaatatgCATACAGGTGGACACTCACATCCACGCAGCTGCTTGCATGAACCAGAAACATCTGCTGCGATTTATTAAGAAATCATACCACATGGATGCTGACAGAGTGGTCTATAGCACCAAAGACAAGAATCTGACCTTAAAGGAGCTTTTTGATAAATTGAAGATGCACCCATATGACCTGACTGTTGATTCCCTGGATGTTCACGCTGTAGGTTGAAAATTAATGTTAGTTTCACTC---TTAAATACTTAGAAGCCACCATGTCTTTCTCCTGAAAGCCCTTCCTTCTCATATACCTCTTAACTC-----------TGCTGCCTGGAGATAGCTCAGAC-AATTTGGAGGT-TCACTCACTGCCAATTGTCCCAGATTTCATCCTTAGAGCCCAACTCCTTCCCTTG---CTACACCCTTTGTGTGCTTGACTAGC-------ACTCTATGTCCAGGCACCTCTGTTAATCACA-----TCCTTCTATTTCCTGATTCAGGGCCGCCAGACATTCCAGCGTTTTGATAAATTCAATGATAAATACAATCCTGTGGGAGCAAGTGAGCTTCGGGATCTCTACCTGAAGACAGACAATTATATTAATGGAGAATATTTTGCCACTATCATCAAGGTGAGGAGCAATCAACCAAATCTACAGTGCCTTGCACAGTTCTTGaagaggagaggcaggaggaaagaaaggaagaaaagaatggagagaaagggagagaaggaagcagggagagagagaaggtacAGAG

a score=17066
s chr3           103092269 316 + 160039680 CTGGCCTTCGACCCCTCTCTTGGTTTTGCAGGAGGTGGGTGCAGACCTGGTGGAGGCCAAGTATCAGCATGCAGAGCCTCGCTTATCCATCTACGGTCGCAGTCCAGATGAGTGGAACAAACTCTCCTCTTGGTTTGTCTGCAATCGCATCTATTGCCCCAACATGACGTGGATGATCCAGGTCCCCAGGATCTAGTATGTATTTGTCCCTTCCCCTGGGGAGGCGTTCTGAAGCCCAT-TTCCTCTTACCTGCCTCTTCTCCCCACT-TGAACCAGAAAGTTATAGCTCATTTAGATAAAAGTCAGCTTTGCTGAAG
s HiC_scaffold_1 113338328 308 - 233722169 CTGATTTTGGATTGCTCTCTTGGCTTTGCAGGAGGTAGGAGCAGACCTGGTGGATGCCAAGTACCAGCACGCAGAGCCCCGACTGTCCATTTATGGTCGCAGTCCCGATGAGTGGAGCAAACTTTCCTCCTGGTTTGTCAGTAACCGTGTCTACTGCCCCAACATGACGTGGATGATCCAGGTCCCCAGGATCTAGTATGTA------CCTGCCCATGGGAA---ACTTTGAACCCTACGCTTGTTCTACCTACCTCCCTACTCCAGTGTGAACAAGGATG-TGCAGCCCATCCCGACGGCAACCAGCTTTGTTGAAG

a score=38872
s chr3           103094048 1786 + 160039680 AGAGGTACTCGGGATAGCCACTCC-CGTTTGCTGTCTTGTG-ACCACACATGTATTTGA-TCGCTGATA----TCTCTATGACGCAATTACTATAGT-----CCCCATAGCTGGACTCAGTTGTAAAGGTTGAGTTTTCTTGCCACAGAG---TTTGTAAAAGAGCAGGAATATGTTGTACAG--------TGGCCAATCCTAAGCCCAGTTCAACCCAAACTCCTCTTCATGTGTATGCACAGAGAATATCTGGGAGTGGGTGTAGGAGGA------ACACAGCAGGTCTT-----------TTTCT---------------------------GGCCT-------------------------------------------------------------------------GTAACATTTGGTCCTCTGGCTCATGCAC-----AGTTGTC---CTACTATGCTCTCTCTCCTAA--TTCCCTTCCCTTTTGCCTTTAGTGATGTGTTCCGATCCAAGAATTTCCTGCCACACTTCGGAAAGATGCTGGAGAATATTTTCCTTCCAGTGTTTGAGGCCACCATCAACCCCCAAGCTCACCCAGACCTCAGTGTCTTCCTCAAGCACGTAAGCATGAGCCTCCGGGCTCCTA----ACTTCTCCTCA-CAAGCCATTTAGCCTTGCTGGCCATCACTGACTCTC-CTGCTTAGTTATCTCTTTACATCC-GCCTCCCCTTTGGAGCTGTCTGAGGAGTTTCAC-TGAGTGCAGAGCCCCTGCCCTCAGACTGAACCCACAGTGTGGCTCACTTTTCTGACAGATCACTGGCTTTGACAGTGTGGATGATGAATCCAAACACAGTGGTCACATGTTTTCCTCCAAGAGTCCCAAACCCGAGGAGTGGACAATGGAAAACAACCCGTCTTATACTTACTATGCCTACTACATGTATGCAAACATCACGGTGCTCAACAGCCTGAGAAAGTAAGTATGGGAGAAATGGGGCTGAAGCACTGTCCTTTGCAACATCTGCTGTGAGTGTGTTTCTTTATTAGCGTGTGTAGTGTGTATTGCTGCTGCTGTGCCATGGAGGGCACGAGGAGGTCAGACAATGAAGGCTTGGTTCTTTTCTTGCAGGTTATTGA------------GGCAGGGCCCCTCTTG----TTTCTACCA--TGCTAGG-----TACTAGATGATTTGAGAGTTTCCTGGCAGTTCTTGCCCCAGCCCCCATCTCACCACGGGAGTGCTGGCA--TCACAGATGCATACGACCGCATCTTGTT-GTTGTTTTTATTATTAAAGATTTAtttgtttttattttac-----------------atgtatgagtgttttgcctgtatgtatgtctgtgtctgtgcactgtgtat--------gtgcctgatactcaaagaggcACA--------TACTGAG----------------------------GCTGAAGATGTCCCTGCATGGGGTA----------------------GGTAC-----TCTATTTTC----CATTCTCTCTTG----------TCTCACCATATCCTCTGCTGCC---TCTTAAAAAATT--------------ATATATAT-ATGTGTGTGTGTGTGtatatatatatatatatatatatatatatacatatatatacatgtatatatatgtatatatatatatatatatatacacatacacatatacacataAT---------GTACATGTACTTAGGAAAAAGTACAATGAAGAGTTACAATTATGTTTTGCTTGACCTATGGTTGCTGTTCCCTTCCCAAGTGTTAACTCTGCCAATGGATTTTCTTGTAAATTTCTCTGC------TGTGAGACCCCACT-----TTCCTTTTCACAGGGAACGAGGCATGAATACATTTCTGTTTCGTCCCCACTGTGGGGAGGCTGGGGCTCTCACTCACCTCATGACAGCCTTCATGATAGCAGACAATATTTCTCATGGACTGAATTTAAAGAAGGTGAGTTTAGCTCGCTCTTTG-CTCATtcctctcttctcttctcttctcttctcttctcttctcttctcttct
s HiC_scaffold_1 113339258 1962 - 233722169 AGAAGTGTTCTTAATAACCATTTCGTATTCACTGTTTCGTAtaccacacacatatataaatcacTGAACGAACTTTTTATGACATGACTGCTCTAGTATTTATTCTCTAACTGGACTCAACTATGAAGATTTAGTTTACTTACCACAGAGGGTTTTTTAAGAGAGGTGAAGCATGTAGTCCAGAAAGAAACTGATGCTTCCTA--CCCAGCCCAACTCAAACCTTTCATTGTGGATAAGCAAGAATAATATATGAAAGAGAACATAGGAGAACATACAATATACCAGGTcctagttcttttattttcttatttaggtgttgagaattgaacccagggcctcctgatGGCTAGCCAAGTGCTCTACACCTGAGCTGTCTCCCCAGCCCCCCATACCAGACCATTATTCCCATATATGATATTTGACCCTTTGGTTTCCTCATTCTGGAGCTATCAGTCTAAAAATCTTCTCTTCCTAAATTTCTCTTCATTCTTGCCTCTAGTGATGTATTCCGATCCAAGAATTTTCTTCCACACTTTGGAAAAATGCTGGAGAATATTTTCATGCCAGTGTTTGAGGCCACCATCAACCCCCAGGCTCACCCAGACCTCAGTATCTTCCTCAAGCATGTAAGCA-GGGCCTTGAGGCCTTGATAGTGCTGTTCCTGAGCAGACC------CCTACTTGGTCATGACTAATTCTTGGTGC----TTATCTCTTTACTTTTGGTCCTTGCTTGAGAGATG-----GAAGTTTTTCTTGAGGGCAAGAACCCTGCAGTTGGACTGGAATCATTACATGGATTGTTTTCCTCACAGATCACTGGCTTTGACAGTGTGGATGATGAGTCAAAACACAGTGGTcacatgttttcttctaagagtccCAAGCCCCAGGAGTGGACAATGGAAAAGAATCCATCCTATACTTACTATGCTTACTACATGTATGCAAACATCATGGTGCTCAATTGCCTAAGAAAGTAAGTATGAGAG-ACTGGGGCTGAAGGAAagtcatttgacccagct------------cttccctcATACCCTG----------------------GCTCTATAGATAGTCAGAGGC----------------CTTGGTATACTCCTGGCATGTTCCTAACTGGCCCAAATCAGAAATTTCTCTCTTAAACTTTTCTTCAGACTCTTAGGGGGAACAATAGGCATTTCAAGTGCCTTCCATAA----TTTTCACAGTTCCT-TTTCA-----------TTGGCAGTTTAGGAATTTATA---------CTTATCAgttgcatt--ttattataaaactatatatatatattttactcttcTTGAGgcacagaatagagaaaaattaaacgtgtgtgtgtgtgtctgtgtg-gtgctggagatcaaatccagggcctcacactt-gctaagcacaggctctaccactgagctatagtctTCAACCTCCAATAGAGTTCTCTGAACCATTTCTTCCATAAAGTGCAAATAGGGAAAATCCTGAAATGCTACAGATGTTTCTGTTCAGGTCATTAGCTCTTGATAGCTTCCTTAACCCCACATCCTCTGCTGTCTTTTCTTAAAAAGTTGGTCTTTAGGAAGAATTAAGATGATAATTTAGGGGATGGATGCTCCCAGAGCATTAACTTTTTCTa---agaaatttacttttcttttta---aaattaatatatgtttctagtcata-atgattatattcattgtgaggaattggtacatgtatatggga------------------caccttcattctttttttatcc-----------ctttctcccca----------cccccac--aatTCTCTTATAAATCACTCTGCCTAGAATCTGTGATTCCTATAGTGATTTCATTTCATAGGGAACGAGGCATGAATACGTTTCTGTTTCGACCTCACTGTGGGGAAGCTGGAGCTCTCACTCACCTCATGATAGCATTCATGATAGCAGATAATATCTCTCATGGCCTGAATTTGAAAAAGGTGAGTTAAA---GTTCTTTgccttttccctttattttctatttcattctttctttctttttttttttttttt

a score=7691
s chr3           103097626 368 + 160039680 ATGACAGCCAAAGGGGTTCTTTTGAGGTTACCTTGTTAATTGCCCTCAGAGAGGAATTACCACATATCTCCCAAC-TTCCATCTTGGAGCTCT--CACAGGCAGAGTCAGAGTCAG-TTGGCTTCCCTCAGGCTACTTTTGCCTGGTTTCTTGTTGTAGCATGCTTTTAAATGTCTCTTGTGATAGTCATAACTTTCATGAAGCaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaagaagaagaagaagaaGCAAGTTTCGGGGTGAG---TTCCGAGGTGTAATTACTTAGATCAGACCATTTAACTTTGACAACTTAGTACTCAGATTTTTAAAAAGCTGATTTAGCCTAATTCTTCTGAAA
s HiC_scaffold_1 113341354 314 - 233722169 ATGAAAGCAAAGGGATTTGCTCAAAATTTCCCCGACTAGTTGTTCTCAGAAATGAGTTAATGCAGATCTCCTGACATCCCCTTTTAGAACTCTGACAAAGGAGAATTCAGAGGAGGCTTGGCTGCCCTGAAATTAGACTTGCCAGATTTCTTGTTATAGCATGCCTTAGAATGCTTCTTGTG--AGTCAAGATTTTCATGTAGAAAAAA-------------------------------------------------------AGGTTTCAGGGTGAAGCCTTTTCAACTTTAATTGCCTAAGTTAGGTCATCAAACCTACACAATTGAA-GTTCAGA---TAAACAACTTGGCTTGACTCAATGCTTGTGAAA

a score=39863
s chr3           103098596 1781 + 160039680 ACCGTGGGATTTTTGAGGTTTTGTTGTCTGTCCCTGTCCACGCTCCTTATTGTTGTTCTCGCTGTCTTTTCAGAGTCCTGTGCTACAGTACTTGTTTTTCCTAGCCCAGATTCCCATCGCCATGTCACCGCTGAGTAACAACAGTCTGTTCCTCGAATATGCAAAGAATCCTTTCTTAGATTTCCTCCAGAAAGGCCTGATGATCTCACTGTCGACCGATGACCCGATGCAGTTCCACTTCACCAAGGTGCGCcgcacgtacgcacgcacgcgcgcacgcgcgcacgGAAGCTTGAGCATGGTTTGCTGAGCTCTCCCTCACCACGCAGAAATGGAAAGTCAAATCAGGGCGCTTCTTTCTCCGCTTTCTGTAGGATGTGTACTGTTTCTTTTACTAATGCAC---------------TTCCTCCCTTACGTAAATAACTACAGGAGCCCCTGATGGAAGAATACGCCATCGCTGCGCAAGTCTTCAAGCTGAGCACGTGTGACATGTGTGAGGTGGCAAGGAACAGTGTCCTGCAGTGTGGGATTTCTCATGAGGTAGACTTGACCGTGGCTCCCTACCCTTCTGAGAGTTGGGTCTAACAATCTAACCACTGAATCATTAA------TGAGGAAA-ACAGGCAGGAAAGCTTTTGCACAGACCACATACAGCTGCTATGGCTAGGGACTAGAA--GACTGTCCTGGG----CTGGGAATACAGCTTAGTGGTAGCGCAAGCCTTCGAGGAACTAATTTGAGTCCCTACAGCTCCTCCGTCAAGCCCTATTCTCTGCCATGGCTCCACCTTTGATTTCTCAGGAAA-TGTGCCCATGGAGGG-------AGGCACTACAG----------AAATGACCCCTGGTCTCCTCTTGTTTATGAGTAACAT--------GAAGA-TTACGGTGGAGGA-GCAATCGCTGCCTATCCCGGTATAAAAAGAGAC-TCAGAGACCTCTTTTCCCATTGTCTTACAGGAAAAAGCAAAGTTTCTGGGCAACAATTACCTTGAGGAAGGCCCTGTTGGAAATGACATCCGGAGGACAAATGTCGCTCAGATTCGCATGGCCTATCGTTATGAAACTTGGTGTTATGAACTCAATTTAATTGCTGAGGGTCTTAAAGCAACAGAATGAATAAAGTAAATAGACTAAATAACACCGCGAGTGGGTTTTTCATTGAAAATTTGAATCCTATACTACTTGTTATTGAGGCCCTATTCTTATTTATTTAtttattttcttaaaacttattttatgtatgagtgctctacctgcatgcacacctgctcaccagaagagggcatcagatcatattataggtggttgtgatggctcacaccattgctgagaattgaattcagtacccgggaagagcacacagtactcttaacctctgagccatctctccggcccGAGACCCTACTCTTAAAATAAGCCAAGTACTGTATTAAGCCTTCCATTGATACTCTTTTACTCGGTTCCTGTCACACCTTTGTACAGTAGATATAATTTCTATTTTGGGGATAATGAGCCAATGTAAGGTAGATGA------TGCCCTC---AGGACACTCTTCATGTAGGGCAGCTGCG-GGAACAAAGTTTGTGTGACTCCAGAGTCTGCACAACCTTCAGGCAGGACAGTTATCAGAAGAAGCCAAGGACATAAGCCACTGGCTTAATGCT-AAGAAGATGGGCTTTGGGACTCAGAGACTAGAAGAGAGTTAAAGCACCTGGAACCATTTAAAAGTTTTTTGACAAAGCATAAGTCAACCATGGCTTTCTTAGGTAAGGCCAGACCAGTTATATGAAAGCTTAGAAA
s HiC_scaffold_1 113341788 1484 - 233722169 ACCATGGAATTTTAaggtttctagtttcttttccttttgccatctctaatt--tctttttact-ttttttcagagTCCTGTGTTACAGTACTTGTATTTCTTAGCCCAGATTCCCATCGCCATGTCACCATTGAGTAACAACAGCCTATTTCTCGAGTATGCAAAAAATCCATTTTTAGACTTCCTCCAGAAAGGGCTAATGATCTCATTGTCCACCGATGATCCCATGCAGTTCCACTTTACCAAGGT---------------------------ACACATGTATATAAGTTTGC------TTTGTTCAACCATTGTTTCCCACCCAGAATTG--CAGTCAAATCAAGGAACTTCATTTTT--CTCTATGTAAGATGCATATCACTT-TTTAACTAATAGATGCATTTATGTCTATGTTGCTTCATTAAATAAACAATGTTAGGAGCCCCTGATGGAGGAGTATGCCATTGCTGCACAAGTCTTTAAGCTGAGCACCTGTGACATGTGTGAAGTGGCCAGGAACAGCGTTTTACAGTGTGGAATGGCTCATGAGGTAAGGCTGTCTTTGG----CTGCCCTTCTGAGCACAGGGT-----AACTCGAATACTGAAGAATTACAGTGGTTGAGGAAATCCATGTGGAAAAATTATCCTGTGAATTAGATGCTG-TGTTATCGACAGAGACTAGAAACAATTATTCTATAATCTCTTTGGCCACTTCTT-----TAggggaag-------ggaaataaaataa--------------------------------------------------tgatttctcAGCAAACCATGCACACTGAGGAACATGGTAAGTACTTCAGAGTGCATTAAAATTGTCTTC----CCCCTTTTGCCTACGGCAAAAATTTGCAAAGGAAGACTTTTTGTGGAAGATGCAATGATTATCTATACCAGCTTGAAAAGAAACAACAgtcattctgctttcttttctctcacaggtAAAAGCAAAGTTTCTGGGTGACAATTATCTTGAGGAAGGCCCTATTGGAAATGATATCCGCAAGACAAATGTAGCCCAAATCCGCATGGCCTATCGTTATGAAACCTGGTGTTATGAACTCAATTTAATTGCTGAGGGTCTTAAATcaaca----gaataaagtaaatcaaat-aataata-------tgagtttttcattaaaaa---gaa-------------------------------------------------------------------gtaTGAG-------------TAAAAACCTGCT----------------------------------------------------------------------------------------------------------------------------------------------ATATGTCAAGGATTATATTAGATGCTCCCAGGctattatttcat----ttactat-GTAACTTTTTAAAGT-GGTATTATCTATATTTTGGGAAATGTGAGTAAACTGAAGTTAGCTAAGTTAATTACCTGCACAAGGATACAACTGTTGAGGGGTAGCAGTGCGGTCCTAGGTTTGTCTGACCACAAACTTTCCATGATTTTTAGGCAAAAC---TATTAAGTCTAGATAAAAGCATAAGCAAAGGTCTTCAAATTGGAGAATATTAGTTTTAG--CTTATATAGTTAAACTTGGTTAAGGTACTTTGAGTCATTAAAAATTCGTTTGACAATTTACAAGTGGATAGTGGTTTTCTCAGTCAGAACCAAAGCAGGTATACCCAAATATAGAAA

a score=4448
s chr3           103100903 114 + 160039680 TCCAGATTATATTTGCTCACACACAACTGTGTTGCCATCTAGTGGTTGGGTTGATAATTCACT--GTTTATTAAAAAGGGGGTTATGGACTAAACATAAAGATTTTTTTTTTTTTT
s HiC_scaffold_1 113343378  98 - 233722169 TCCAGATTATACTTCTACACATACAATTGTGTTGCCACCTAGTGGCTGGGCTGatatttctttcagtttatt------------------taattgtaattatttcttttctttct

a score=11394
s chr3           103121304 1248 + 160039680 ctttctttctttttt-------tttttttttttttTGAGGTAGACATTTTTTCCTAGAGA-----CTTTTTTTTTTTTAATCTCTTATCTTTTTCCTGAAATGCCATCTTCAGGATGCCAACAACAATTCTTTTTCCATTTGGCTATGTTCCTTCTAGTAGCTAAGTAGC-----------TGGCAGCTATTTTCTTCAGATAAACAATTACTTTGGCTCTAAACATAAAACAAGTGTTATTAAAATAGCCATCTACACCTAATTCCCCACTTTTCCCACGAACCAAGAAGAACTGAGAGCTTAGG------TAACTGTGG--TAGATAGTGTAT--------TGAATGTGTGT--------------------------------------GTTCTGGCTGGAATTGGAGCCCTGTTCTAGAACTTTCGCCT---------GAGGCCATGGGTTCAACTCCAGCTGTGCAGAGGAAGAATC---------------ATCCGTGTCTCTGTTCC-TTGGAGATATTAAGGTTCTGCAGAATTTTGAGAACAAAGAGTACCTGTTGTTTAGAATAGTTAATACACACTGTCTAGAACACTCACTTCT--TCCTGAGGGTCTGAATTCTTACAAATGTGA-----AGCCATCTTAAATCCACATTTTTCTTTGCTCTCAAAGTAGTGAGGTTGTATGAAAATTGAGGTTCTGGAA----------GTCTTACCAAAAGT-------------CATC-----------AGGTGGTCTACAAGGTAATCAGGGGGTCTCCAAGGC-----AGTC----------------AGGTGGTCTCC-------AGGGCAGTCAG---GTGTTCTCCAGGGCAGTCAGGTGGTC-----TCCAGGGCAG-TCAGGTGGTCTCCAGGGCAGTCAGGTGGT--CTCCAAGGCAGTCAGGTGGTCTCCT--------GGGCAGTCAAGTCTCTAGGATAGTGAGGT----GATTACCTTGGAAAGTAATCAAATGGGCTCTAGAGTGCCATTCAC-----------TGATTACAGCAACACGTCTATTAGC-----TCTGTTGAATAATTTTTGCTTTATTTTTATGGGTTAAAAAGAATAGTGGCTGCTATTCTGGGGGCTG--AACTTTTAACAGAGGGGAAACCATTTCCTTTAAATTTGATACTGGGAGTGTTTTCCCTTAAGCATTCAGATGCAGGAAGTGCAGTCCTCTTGTTCAGTAGCTTTGGCTGTGTCAGAGGGAAAAATGGAGAAATTGCT--TTTGTTTTGGTTTGGTTttttggttttttgagacagggtttct------------------ctgaatcgccctggctgtcctggaactcactttgtagaccaagctggcctcgaact--cagaaatccgcctggcctctgcctcctgagtgctgggattaaaggcatgcgccaccacacatggctTGCTTT
s HiC_scaffold_1 113393093 1360 - 233722169 CTTTCCCTCTTTTGTACTaggctgccttttttttttaaatcaatgaagattttttaaagagGGGTCATTTTTTTGCCAGAGATTTTATCTCTTTACTAAAATGTCATCTTTATGGCACCCATAATGATTCTGTTTCCATTTGGCTGTGTTCTTTCCAGTAGCTAAGTAGCCGAAATCCTTTTGGCaactgttttctttaaataa--ggtTGTTTTGGAATCAAACCTAAaaccaatatttttaaaacagacatCTGCACCTAGTTCT---CTTTTCTTAGGACAAAAGAAGAGCTAAGATCTTAAGATTGAATAGCAATGAATCAAATAGTATTTCTTGGGGCTGAATGCATTGCTAAAGAAGAACttctgataattttatttaagaatataGTTGTAGCTGGGGATGTAACTTGGAGGTAAAGCTTAAGCTTAGCATAAGCAAAGCCTTGGGTGTGATT--AGCAATACcgaataaaacacagaaatgcaGTATGAAGTTGAGGATCAGCTCAGTTGGAG------TGCTTTtgtagcatgcatgaagcccaaGCTCAGTGCCatctaaaataaacacaaaaaa--atatGGAACAACTGATTTTAGATTTTGTGATCAAAATTTGTTTAGAGATAGATAATAGCGGTTCTa---cagaatcttttatttttgtaatggtAGCAGAGTTTTTTAGGAAAAGAGACTCTGTAAagtgagtttgggccaagtaaaagtaggaaaagaagtacatCTCATAGCATGAGGGTGGCCATCCATGTGAACACAGTGAATACAGTGCCCCAAAATCTTAACTTGaatataaaaattgattttcaaaatttagaaTAATTAATATATCTTATTCAG------CATATATTCACTTTTCCAAAAAAGATCTGAAATTCTTTACAAATATAAATCATTAACTCCAAATC-----------TTCCTTTGTCTGAAAGCAGT-----------GAAAATGGAATATAAGATTGCTTTGCTAAGT--TAGAATTGTCTCCAAAGTGAAATTCACTGTCTGTATTTTGCTTACTGCA----GTGAATTAACATTATTTAATTAAATGATCCTCACTTCATTGTTAAGGATAGAGAAGACCAGTGGCACACACTTTGAGGGTCAGTAGCTGCTGAAGGAGGATAAACC-------TGAAAGTC--Ttctagggaaatttttttttaag-----aga------------agttcttttg------------------------------------ggggttgtttgtttgttttgttttggt-------ctttttgagacaaggtctccttatGTAGTTTATGctagctgtgcagttcaggctggcctaggagacagtatgtagtccagactggcctcaaacttgtggcaatcctcct-gcctcagcctcctgagtgctgagattacaggcttgcaccaccacacctggcttaattt

a score=66427
s chr3           103130246 2265 + 160039680 tgtctgtctgtctgTGTATGACTGGT---CCAGTTTTGATCAGCTGTACTGACAGAGCTAGGCTAAGATAGTGTCCTGCTTGTTAATCAGGGCTAGGCAGAAGCAGCAGGAGGAAGGATGACCC--TGCCTCAGGAAGTTTTGAATGGCTTGTTATTTATAACCAGTATGCGGTAGAGCGGGAGAGCAGGTCTCTGCTTA-CTGACAGGAAGAGTTTCAGCCGGCCAGTGTTCACATTTGAGGAAGCGGTTTATGGAGCTGACTGATTGAAGCTCT---GCGGAAGGAAGGATGAGAAAAGTGACTG-----------CAGATCTGAGTCA-----GAGGTAGCAGAGATGTGGGAAACCCAGCCAGGACAGGGTAAAGGGTGCCTATGCCTTTGGA----------------------CTGAGTCC-CTGTAGCAGCTTGTGTGAAAGTCTGTG-TGCTAATAGGTCAGCTGAAATAAA--TATATGACAGACTGATGTTACCTAGCAACAGAAGACAGGAGGCGGGAACTAGCTTCCAGTGTGTTTGTG------AATTGGTTCCTG-TCTAGACTTGTAAATGCACTTTTTAATAATGGGGTGCTGTTCTGATTCTGtgtttgtttgtttgtttgtttttgagacagggtttctctgtgtagctctggctgtcttgga----acttaccaggccttgaactcacagagatcctctgcttc---------tgcctctgcctcctgagtgctgggattaaaggtgtgcaccactatgcccagcCTTATGTGTG-ATTTTTGTAATATTGCATTGTTGCATGTTTTATTAAGA-AACGCTTCATAAAGAATAGATTTATGGGCAG-----------GAGGTATATC----------GAGCTCAGAGA----------TAGAGT---------------GCTTGTCTAGCACACATACGG-------------------CCACATA--------------------CACACAAA------AAAGAATTGATTCATTACAGAATAATGTATAC--------------------------ATTTTGC--------AGGGCATTAAATACAGCAGAGTATTAAAGCTG----------ACAG------------------------------------------------------------------------------------------------------------------------CTTAAGAAATAGCACCAGGG-ATATTTTCTTA----------CTAGGCTTGACTTTATGGAGCTGAATTACAGGCACAGTTTTTACAAATGCGATGTAATTTA----TTCAGTGCTGGGTAGACAGTGTTC-AGTGGGGTTTAAAGTAAGAAATCATAAAACTAAGTTAATATTCTTGTCTCGTTTTGATAGGATCATTCATGATACAGTTGTAGCTGTTTTCAACAAAGCTCGGTGATGAAAACTG-TTATTTTTAACAAGATACCTCCAAGTTAAACATGAAACGAAAACACTTGGATCGTTTCCGTTCTGGCAAGGCAAAGAATACAGCGTTTTCCAGCTAACTGGTCATGGCACCTCTCTAAGA---GTGACTCGTCATGCACCCCACCGGGAACATGGATGTTGGCTTTACACGGTCTGCTGTTCAGACCTTGTCCAGGAGCCACTGCAAAAACATCAAACAGAAGATTTCCCAGTGGGAAGGAAGAGCTAACGGTGTAACCAAGACAGCTAAGTTTCACCCAAAGGACTTTGGAGTGAGGTATAACTGCCACCAAGAGAGTCCCCCTCATAAGCGTCCCACTGGTGAGG----------AAA--------------------GGAATGGGGCTTTACCCAGAAACACGGATGTCAAAAGCCGAGATCAAAGTGAGGATGAAGGCGAGGGTGGAGAGTGTAGAGGCTCCCACCCCTCGGAAGCTGGACTGGACTCCAGCCTGGTGTGTGCTCGGGTCAAACAAATCGAAGGCTGCCAAGCTGTTGCTGTGGGTCCAGAGGCTTCCTTACCGCCAGGAAACTTCTACACCTCCCAGATACCGTGGAGAAGCATAGACGGGCTCTCCCCAGATAAACCCTTAAATTTGGCCTTAGCACCTTGTAACTCTACAGGGAGAGAACCGGATCTCAGTGTTCTGGATAGTTCTTACGGAATAACCAAGAGCTTGGAAAATATTTATTATGAACCTGAGGGGCAGGAATGTGGCCCCTCTATAAATCCTTTACCCAAACCCCGTAGGACATTCAGGTATTTATCTGAATCTGATGGTATACCATATAAAGAAAGGAACTGTGATCAAAAGTACTGTGAAAGTATTTCCTGTGTGGACCCTTCTTTGGCCTCTTCTCAGGATCCCGAACCAAAGAAATATGGCGGGAAGATCAGAGGGCGGTCCAAAAGGTATGTATGTGTTCGTCTTACAGCCCGTGGTTTGTAGT-------------GTATGAGTCCTTGCGCTGCTTTGACCTTCAGTCCAAGTTTCCTTTCCCACCTTGGAATACGGGCTTCAGCTGAGCATAGAGATGTTGA-TAGCATAGAATCAAAGTAGGAGGAGAAAGCAAAAGTGAAGAAGTATAGGTAATA
s HiC_scaffold_1 113417434 2564 - 233722169 tgtgtgtatgtgtgtgtgttgcatatATATCAGTTTTGGTCAGCTGTACTGAAAGAGCTGCAATAAGATATTTTCCTGTGTGTTAATCAAGTCCACACAGACAAAGCTCAAGGAAGGATGACCCCCTACCTCAGGAAGTTGTGAATCAGTTGCTATTTATAACCAGTATACAATAGAATTTGAGAGCAAGTCTGTGCTCAGATGGCAGGAAAAACTTTATT--GCTAAATTTCGTATTTGAGAAAACAGTTTATGGGCCTGACTGAGTGAAGCCTCTAAGTGAAAGGAAGTAATGTGACAGCCACTGTAAGTATTTTGCATATTTGGGTCAAGAATGTGGTAGCAGAGATGTAGGAATTTCAGTCCCTGAAAAgcaagtgtt--ttat---tttgaagagacaaTATTTAACGGGCAACTTGGGTTCACTTTAGCAGGTTGTTTATGCAGTTGAGCTGCTAATAG---AGTTGAAATAAGGGTATATGATAGACTAATACTGCCTATCAACTTAAGATAGGGAATA--------CCTATTGTGTATATTTGCAAACTAACTGACTCTTGCTGTGGATGTGTACATTAAATTTTTGGTCAGTCAatg----------tctgcctttctttctttctttctttct----------ttctttctttctttctttctttcgaggGGGGcaggtactaggaattgaactca---agaccttgagcttaccatgcaggtgcttatgcc--------gctgagct---------------atatccctggcccggTCAATGTATTTCTATATATGTGTGCTGGCCCTTTTTTGATGAAGACAAAGTTTCATAAAGAATTGGTTTActgtaagctgggtgtggtggtgtacatctgtaattccagcactcaggagactgaggcagtagaaTCATgaaaagttcaaggctagcctgagccacatagaaaattcaaaattagcgtgaactacatagtgagaccctatctcaaaaacaaacaaatgaacaataaaattgttttattaaaaaataatgtatactGCTATAGGTAATGCTTAAAACCCTCATTATACTTAATCTAAGGAAATTAAATGTGGCAGAATATTAAATCTGTTTTGAAATGacaggggttttttgtttttgtccttttcctttttatcggtaccagggatcgaactcacgactgcctgcttgcaaggcaggagcttatgtcactgagctaaatccccagcccctgaaatgacCGCTTTAAAAAATGTCACAATGTTGTATTTTCTCAGTATCTTACTTTAGGATTACCTTTATGGAGTTGAATTACACATGCA-TTTTTACTCCTGTGATGTAAATTAATTGCTTAAGGTTAAGTGGGTGATGTTTTAGTAGAGTTTAAATTAAGGAGTTATATA-TTGTGTTAACATTCTTGTCTCATTTTAATAGGATTATTCAAGACAAAGTTAAAGCCATTTCCCATGAGGATCAGTGATCaaaattaattgtttttaaaaagacatttacaagttaaacatgaaagaaaagtacTGGAGCCATTTCACTTCCAACAGCATAAACTGTATAGCATTTCACTG-TCACTTTTAATGGAACCTTTGTAAGATTCATCACTTGTCATGCACACAACAGGGAACATGGATGTTGGTTTTTCTCGTTCTGCTGTTCAGACATTGTCAAGAAGCCACTGCaaaaacatcaaacaaaaaaTTTCCCAGTGGGAAGGAAGGACTAATGGTACGTCTAATCTATCCAAGTGGCATCCAAAGGACTTTGGAGTGAGATACAACTGTCACCAAGAGATTCTCA---AGAAAAATCCTATTGCTAGGGTTCAGAACAAAAACTTGGGTATAACCAACTCTCAAAATGTGGGTTTAGATATGAGTGAAGGTGCTAAAAGCCATGATCTGAGTGAGGATGAAGGTGGAAATCATGACTATGATGATACAcacatctttaaaaatgaatcagaATCCAGTTGGGTATGTTCCAGAGTCAAACAAATTGAAAGCTGGAAAGAAGTTGTGATAGGTTCTGAGACTTCATTATCTCCAGGAAACTTGTATACCTCACAAATATTGTGGAAGAAAATAGAAGCACTTCCTCCAGATAAAGTCTTAAATTTGGCTTTAGAGCCTTGTGgcctttcagaaaaaaaactgaattgTAGCATTCTAAATAATTCATATGGAATGACTAAGAGCTTAGAAAATATTTACTCTGAACCTGAGGGGCAAGAATGTGGATCTTCTATAAACCCTTTGCCAAAACCACGCAGGACATTCAGGTACTTATCCGAGTCTGGTGTTAGACCATATGAAGAAAGGAACTGTGACAGAAAACACTGTGAAAATAGTTCTTGTGCAGAATCTACATTGGCCTCTTCTCGGGACCTTGAACCAAAGAAATATGGAGGAAAAATTAGAGGGAGATCAAAGAG----GTATGTTTTTATCTTAGGCAAAATGATTTGCAAGCATTTTCTTTTTAGGATTAGTTCT--------CTTTCCTTTcaaatcaattttaatttcttagcCTAGCTTACAGCCTTAATTTGATCATATTGATATTGACTAACATaca-----------gggaaaatgaaaagaagaaaaagtagaagtaaTA

a score=24669
s chr3           103133137 773 + 160039680 CTTTTCAATTTCTGTCTTATCATTCTGAGATCAAAGTTTTTGAAGGTGTAACTTTAAAATACATCTTCTTTCGTAAGGAAATCCTTTGAATTTGAAGATATCCAGCACTTTCG------GAACTCACGAAAGATCCATGAAGAACTTGGAAGAAATGCTGGCTCAGCACTTTACTACACACAGTCCGAGGATAATATCTATGAGGATATTATATGTAGGTATTCA------TGCT-TTGGAGTTAATGTAATGCATGTTTGGGGGTG-CTCATCATTGTACGGGGT---CTCTTACAATCAAACGTA-TCTGGTTTTAACTTTGTTTTTCTAATTTGGAAACACGTGGCGTATGCATTTTCTCATCATGAGTGAGATTGACAGCTGGATGTCATTACAGATGACTCAGTTGGAAAGTGAATGCTGCAGTGTAGTGTTTTCAGAGTTCTTTAGCTTGGATGAACACTGGAGTGATAGATCAGTTTAAAATGACATTGGTCTTACAACCTTACATCCCCATGAGAATGAAGAAGAAGAA----GAAAAGCATTGTTTTCT------TTAGCTGCAGTCACA------GGTCCCACTTAATTATGTTCCTCTAATCAGCATTGCTATGATTTCTAAAGATCCAGCCAAGGAAAATCCATACGAAGATATCCCAGTGCAGTCGTTCCCTGTTTGGAGATCCCCTTCAGCGTGGAGGCTGCCACCTGCTAAGAGCGCCTTCCGAACACCCAAGGTATAAGCGGAGGCTTCCCC-AAAGAGCACATAGATGCTTGTGTGTGGTCGTATAGAAGA
s HiC_scaffold_1 113420908 740 - 233722169 CTTAGCAGTTTCTATTTAAAGA-----AGATTagagttttgaaaaatatagCATTAAAATGTATCTTCTTTCCTAAGGAAATCCTTTGAATTTGAGGATATTCAGCACTTTCGAAATCGGAATTCACAGCAGATTCATAAAGAACTTGGGAGAAATTCTGGTTCAGCACTTTATTACACACAGTCTGAGGATAATATCTATGAAGATATCATGTGTAGGTGTATACAACTTTGCTCTTAAATTTAATG-AGTATGTATTTGATACTGTCTAATTATAGgatagtattttcttttataatcaaaCATAATCTTGGTCTACATTTGTCTTTGTAGTATGGGTACGtttggtata---attttttttactcTAGTGAATTTTACAACTAG----TGCAATGGATTAttcaatttaaaagtaaatg----------------------ttttttaCCTTGGTT-----------------------------TGATGTTGCTCTCAAAAACC-ACATTTCTACAGCAGTGAAGAATAAGAACCCTaaatataatcaatttttaaaaattttgctgtgTTCACttcctttatttctatttaattatgTTGCTGTAAGca--atttttgttacttttcaaGATCCCACCAAAGAAAATCCATATGAAGATATTCCAGTGCAGCCTCTGCCTTTGTGGAGATCCCCTTCAGCATGGAAGCTACCACCCACTAAAAGTGCTTTCAAAACACCCAAGGTACAGCTACAAGATTAATTGAAAGAACAT-TAGAGTCTTGTTTTATGTTCtatacaaaa

a score=26582
s chr3           103136938 1313 + 160039680 TCCCTTGAGAATTTGATCATAGCACAGGGTAGAATTTTGGATTAGAAAAC-----AACTACATTACT-GGGATGAGAAGGAG-TTGCAGAATCCCCATTTGGGATGAATTTAAAGGAAAAAGATAAGCATTTATTTTCTGGGGGAGCGTTGACTTTGTTTGGAAGCATAGACATTTCCTAGAG------ATCTTGACCAGTGT---GTCTCCTGTTTTAGCTTCCTCCCAAACCCCAGTTCTTTCAGCGGAAGACTATGGAACTGAAGAATTCTCAAGCATATTTTCGATCAAAAATCACAAAGGATACTACTTTGCCTGTCACCCTAACGGAATGGAAACTGTTCCGAGCTGGAGAGGTGGCTAACAAGAAGAAGAGAAATCTCCCACCGGTGAGGAGACCAGCACACTCAGTCTTCAGATTCTAATA-------AAGT-----CGAATAAGCATTAGGATGAGCTGAATAATAGGTTAGAACTTTCCTGTTGGACTC---AGACTTGGGAAG--GCCTCTA-------------------------------------TTGTCTTGGCAATGGTT-----------------------------------------------------------GGAATCAGCTACCGATCTCACATAAACTCCAGACTCTCTAACAACAGGAGAGTGTTTATATGCCAGTTCC------------------TTTATGTACCAGAGCAAGGGCAGCCTTGTGCCGGGCTTTACAGG-TTTCAGTAATGATGAAGTATGTGTCTTTTA----------TTAGGATTACAATGTCTACTCAGAGGTGGAAAAAAAGAAACCAGACTGTTGTTTGGTTCTCGAGAC-TATCAAAAACCATATGAAGTAAATGACCTTGCCTTCAAGGGAGGGGAAAGGCAGTAAGTGCCCCTCTGCCGTCTTGACTGGAACTGTTACAAGGCAGAATATTTTAATGAGATCACTCGT----AGCTATATCTTCTTTTAGGAGAGACTTTTTGGGG--------------------------------------TTACATGAAGATATTTTCAGGATTGGCACAATACAATAGCAGATA-----TATACATAATGCAATCAGATGATTGAAGTGAT-TTTCCTTCCATAATGCCAGGTGAATTAG-GTCATTTTTTCATTTAGCACACACATTTTGTACCTGACTTTAACATAAACAAAAGTCGAACCTGTTTCTTGGGTTAGTGACTATGAACAGATCGGTTCCTTGGTAACTG---TGTTTCATAGTCATTTAGTCTGTCTGTTTTCTGCTCTTGCTCTT-----------------------GGGCAGGCATCCTGCAGGAGCCTTCTCCTCAGGAAGGTGGGTCTGGCACACACAGA------CTCCATGGGACTC-----TAGCGGATCATGTGTTCGTAAAA--CAAGATGCAGACTCTTAAGAGATTCTGC-TTAAGATTTCT--GACCTTGAAATGGCATTAGCAACTGTT--TCAGAGGATTGT-GGGTTAAAGGAGAC
s HiC_scaffold_1 113421934 1525 - 233722169 TTCTCTAGGAATTTGATTACAGTGTAGG--AAGACTTTGAATTCTAAAACTGAGAAACCTCTTTACTCGTGgtgaaaaagaaattatggtattctcatttgaaattattttaaaggaaa--gatgAATATTT---TCCTGGGCTAGCTTTGACTTTCCATGAAAACACGGGTGTTAACTGGATGACTTTACCTTTACCTGCATATCGTCTCCTTTTCTAGCTTCCTCCCAAACCGCAGTTCCTTCACCGAAAGACTATGGAACTGAAGAACTCCCAAGCTTATTTCCGGTCAAAGTTTACCAAGGATACCACTTTGCCTGTCACTTTAACTGAATGGAAACTTTTCGGAGCTGGAGattttgcaaacagaaacagGAGAAATCTTCCAAGGGTAAGGACTTCAGTACTTTCATTCGTCTTATTTCAATATTTCCATAAGTGagaataaataaacattaaaccGAAATGAATAATAGGTTATAAAAAATCTATTGGAATTAAAAGATGTGGAAAGCAGCCTTAAGTTTTAAACTTTTGGTTATGCAATAAAATTGCACGATTTGCTTTTGCCAGGGTTTCTTTTTGAGTTGGGAAGTTGATATTACATGGGTGGCTTCACTTCAATTACTGTAGCTCAAAATTAGCTGTCTGTTTTAAGGAAGCACCAGAATCTC--ATAAAAGGAACATTCTTTCAAGCTAGTTTCAGTGTTGTTCCTACTTGTATTAAGTTCCTATTTGACTTAAGTTTTATGCCTTAATTTACAGATTTTCAGTAGTGACTAGGTAAATACAGTATATACAGTATATTTCAGGCAAAAATTTCCAgtcagaggaggaaaaagagaggtTGAACTGTTACTTGGAACTAAAAACTTACCAGCAATCATAC----TGAATAACTTAATTCTCCAGGGA--AAAAAGGCAGTACAT----------CATCCCATTTTCAACAACTGCaacccaaaaaaagaaatcaagattaACTGTGGACAGATATATTGTCTTTTAGGAAAGACACCTAAGAAAATatgtgtaaataattttaaaccattactttgttcttttaattCAGAGTGTTTTTAAGATTGACAAAATACTAT-GCAGAtagtattcagccataaagaagtcAAGTCATTTaagtgttatttcttttcttactccTATTTGAATTAGCAATGTGTATTCATCTAGCACATAATTTGTATACCTGATTTTAACAT----TAAAGTCACAGTTTTTTATTGTCTCAGTTTCTGTTC----TTTGGTTTCTTGGGAAATATTCTGCTTCACAATTA--AATTCTTCCTGtttcctgccttctctttttaaaattcacagatTTGAAAAACTGCCAGCCATCCAGCAGCAG-ATTCTCCTTTGGTAAATCATGCTAGTATA-ACAAAGCAGCTTCCCACATGGCCCTGAAATAACAGATTATGTGTTCTTTAGAGGAAGAATACAGACACCTACAGCA--CTGCATTAAGGTTCTTAAAATCTTAGAACGGCAGTAGCAAATACTAATCAT-GCATTGTAGAGTTAAATGAGGC

a score=9449
s chr3           103140210 215 + 160039680 GTGAGATTATCTCTTCTTGGGAGAAACTCGTGAGAGCAGAAATAGCCAAGCCCCACCCTGC----AGTGGGTGACGGTTCCCCTTCCTGTTCTCAGCAAGTGAAAACTTGAGC-------CGTCTTAATCATGGTAGGGAGTGCGGTAGCCGCATTCCCTGCAGGTTGTGGCACGGAGTGACACACAATCGCTCCCCAAGAAGCTGCACTGGGTTCATCTAGAAGG
s HiC_scaffold_1 113425520 224 - 233722169 GCGTGATTATCTTCTTTTTGGAAGAATTCTTGGGAGCAGAAATAACTGAgcttcattttcttccaaatgagTGAGTGTTTCTCTTCCTACTCTGGGCAAGCAAAAGCTTGCATATAATAATGACTTGGTCATTGTAGAGAATGTGGTAGTCACCTTGCCTGCATGTTGTGACATGGAATGACAAGGAAT--CTCCCTAAGAGGCTGTACTGGTTTCATCTGGAAAG

a score=8815
s chr3           103141014 149 + 160039680 GTGGTGACTTTAACTTGTACTTTTCTTGCCTTTTTTTTTAACAGCTTGTTTTGAAAATAAATGATACATTTGAATCTAAGAGAGGGAAGAAGAGGGTAAAGTTACAGCCTTACACTGGAAAGGAAGCCCCCTCCTCAAAAGGTAAGCAT
s HiC_scaffold_1 113425958 144 - 233722169 GTGTTGGTTTTAACTAGTATTTTCCTGAACTTCTTT-----CAGTTTGTATTGAAAATAGATGATATATTTCAAtccaagagaggaaagaagaaggtAAAGTTACACCCTTACACTGGAAAGGAGGTATCTCCTTCAAAAGGTAAGAAT

a score=24232
s chr3           103145935 1526 + 160039680 TCTGCCCTCTCCTTCCCAGGCTGTGAACCAGGTCTCTGTGTAGCTCTCCTGTGTGGCGCC-----------CACCTGTCAGTAGCCAGGCAGG----CAGCTTCCCTGGGTCACAGTGCTTCTGTTCAGGCCTCCCTTTGGTCgcagcttactgcatca-tacagagcctgc-tccattccctcacttcatgtcaagacatacctgttggtcccaaatcaccccagtacactgtcaaagtatgggaagagagag-tcgcggtcacagaactctcatttgggttgtgttataactgctg-tattttgacctaagttactaatatcttactatggttaatttataaatAATCTCACACACTCACACTTAGAGCAAAAATGGAAACTTCATCTTGAATGTAGGATTCAGT----GCTGTGTTTCAGATCCC----------------------------------GCAGAGCTGTTCTTTTT-----CAACTGCTC--------------------------TGCTAATTTGACCTTTGCTAACTCCACCTCCATCCCTCTTGGGGGTTGGGGGGGCTGACTGTGGCAGTTTCCCATTGTTCTCATCCTCC--TGCTTCCCACTAGGAGACAATACCAACGGAAGCTCTCCTCTCTTCCCTTTTTCCAGGTGAAACCAGTGGGAACGAGAGCGATGCCGAGTACCTGCCAAAGAGTGAGTGAGTCAGC-AAGCTGCTCCCTTC------GTGATCCTGG--GCGGGTGGAGCAGCGCCTGCCTTTGTGATTTAAGAGTGGTTTTCCCCAT---GGGAGTTCACGGTGTAGGCCATTGCTTCATTCTCAGACCCTGTTGAGATTTGCGGAGCTAAACAGTACATTCAGCTGTTTGACAACATGACAAATCTCCCCTAGTAGAGTGAGGTAAACCAGGATGGTTCTGAGGACGA---GTTCTGGAGGGCGCAGGCCGGCACCACATGTCC---GGGCGTGTGCACATGCCAGAAGAGTGTGTGAATGATCCGCATTGGCAAGCACTTAGCCTGACATGGCTGATTTCTCTCTAGTAACTCAGGCGCAATTATTAAGTGCATTTTCCATCTGTCGTT------------------------------------AAGAAATGAGATAGAT---------------------------------------------------ATTTACATAGCGCT--------------------------------------------------------------------ACTTCTGTTCCAGGCTATAGGGCT-CCTGTTAGGTA-CAGAATCTTCGCATTTCTGGCTCTTGTTTGTACAAGCCCTTAAT-GTGCTCTGCATCTTCA--TGAGACAAATTGTCATAGCAGGTTTCGTTTTGTTTCTTGTTTAATTGGCTGACGCACAGCACCACA-AAGAGCAGT---CACAAGGTATCAAAGCCGGGCCAGCTCTGACACCCTG--ATCTCATGAGTAACAGCCTTGTGCT--CCCCGATGGCCTAATCTGCTCCAGGTGTTAGATTTTGTAGCCTGACTAAAGATGAAACTAGGAGCATCGTCATGGGCTTCAGCATTGATGTGGAAGGATGACTAATTTATTGCAGTTGCTAA-TGAGAAGCAGAAACCGATG-TGTCTTGACTTGAACTCAGCCCTTTGGAGGGTCAGCACACTTTTTCCTAGAACATCCAGTAAACTGGGTGGTTTCTAGGGAACCATTCCTGGTTGTATGTTTAAAGAGTTCTTAATATTT
s HiC_scaffold_1 113429989 1669 - 233722169 TCTATTCCTTCTTGCTCAGGACGTGAATCTTCTCTTTGTTCAATTCTCTACCACAGAGCTAAGATGCTACACACATATTAGTAGCCATCCAGGTTATCAGATATACTGT----CAGTG-----ACTCAAGTGATCCTTACATAGTGGCCTAATGTTACAGTACAGTGCTTATGTCTTTTCTCTCACTT-----------------------------TCACATAAGCATCATGTCATCATACATTAAAAGAGAGACCAtattcacataacttttatt------atgttataattatagatatt---------gtttttaatttcttactatacctaatttataaattagct-aTACATAGGtatgtat-gtaaaagaaaaaaatgtat-----atatatagttGAGTAGTAGCCACATTTCAGGCATCTATTGGGGATCTTAGCATATACCCTCTTGAAtaagaacaattgttttctcttttgacaACTGCTTGACATAAAGAAATGACTTCTAAGCAGTTCTAGCAGAACTGTTGTTCCTTGTACTTAC-TCCCT----GGGCCTGGGAGGG--------------TTTCCTTTATACTCATCCTCAGGTATTTCCTACTGTTGAACAATACAGATGGAAGCTCTTC------CTCTCTTTGCAGGTGAAACCAGTGGGAATGAAAGTGATGGCGAATATCTGCCAAAGAGTGAGTGAGTCAGTGGGGCTGCTCCCTTTCTCATGATGTTACTGGTTATGGGTGGGGTGGCTCTTGTCTTTGTGA-TTAAGCTTGTTTTTCCCCCTCAAGAAGTTTCACTTTGTAGATCATTTCTTGATTTTTGGAATCTGATGTGATTTGGGAAACT----AGTATA-TCAG-TGATTTACAGAATGTTAAATCT-CTCTAATGGATAGAGGCCAACCAGTATGGTTCTAAGGATGGGGTGTTCTTTCAAGAGCAGG------ACATATATGCAGTGGTTTTGTG-GCAGCCCAACAGAGTGTATGAATTACCCTCTGCAACAAATACTTTCCATTTAATAGCTGATTTTTC-ATAGTAACTCAAGTATAGTTATATAGTCATTTTGGTATCTTTGGGtttgaaaaaggaaacatttagtaaaaaaaaaaaaaaaaagaagaaagaaagatttaggaactgagtatgtagctcagtggttagtGGTAGAGAGATTGCCTaccatgtgcaaagccctgagttcaattgccagcactgggggaaaaaaaaggagaaaggaaatattACCTGTTTTTATTCATAGGCAGTTATATTCCAATGTATTGTGCTGTCTGCTTTGTGTTAGAAAGT--GTATTTCTGGCTC-TACTCATCCAAGCACTTCATGGTGCTCTGTATCTTTATCTTTAATGAATTGTCACAGCAAGTT---ATTTACTTCCTG-TTAAATACCTGACATACTGATGGATAGAAGAGTAGGGAACATGAACTATCTGG--------AAATCTGATACTTTGTAATCTTCTGACTAATAGTCTTGTGCTTATTTCACTGGCCTGAGTTGCCTCAGAGGTTTAATTCAGTAGCCTGACTAAAG----------------CATCATGAGGTTCAGCCTTGATGTGTGAGGATGACTATTTTAGTGTTATTGCTAAGGGAGAAACAAGACCTAAAATTGTCTTGACTTGAGCTTAGCCTGTTG--GGGTAACTAAAGGTTTGCCTGGAGCACTAAATGTCATAAATAATTTC-AGGGAGCCAttcctctttgtatttttaaagtatttttagtgttt

a score=20144
s chr3           103148624 708 + 160039680 actgagccatctctccagcccAACCCTGTTCTTCCATTGGATCCTTCCCTCCTTCGTGCTTTCACAACATCACCAGAAAGGGCCTCTATGGTCAGTCTAGTATTTTTTCCTAGATGTTTTACACATGTCCTGGTGAG------GGATATATATAATACATACATAGAGAGTGCACTACAGATGTCCGATACACCAGTTAGGACATGGATGTG-AGTCCCAGT----GCTTCCTAGAGGTGGACTAGGACTAGGACTGTTGCTCATGTCTTC-----TCCCATG------TCATAGCCCAAACAGAGATATCTGTGGAGAAGACACTTATCTGC------TCATCTGACAAATGACCACA-AATGATTCTCCCTTTGAGAGCCATGGCTTTTGGGGCTAGATAGGATCAGGGT-ACAAGGGAA--CCTGACGCTGTGGCCTCGTTACAGATCGCCACAAGCGCTTGGCACAGCTGCAGCCGTCCTCCAAGAGGAACCCCCACTACCAGACCTTGGAGCGCGACCTCATTGAGCTACAGGAGCAGCAGCTCTTTGAACTCTTCGTGGTGGTTTCTCTGCAGAAGAAGCCGGCAGGG------TACACTCCCCAGGTCATACAGCAGTTCCCTAGCAAGGTAGGTGCAAGGTGGCCAAGCGGCAGCCA--CAGGCTCCTGTGTACTCCTTG-------TTCATTTCCTCTTAGTTACTGATGTCTCTGCCAGCTTGTACCAACACtgagacaggatct
s HiC_scaffold_1 113432085 740 - 233722169 aCTCATCTCTTTCTCCA--CAGACTCagtttgtttttcaaattctgaCCTCTCCCATGAGTTTATGACATTCCCACCAGTGGTATCTATTGTTAATCCATTGCATCTTGC-AAACCTTTTA-ATGTGTCCTGTTGTGCTGCCAGGAAAGGTTGGATA---GCATGGAATGTGTGTTAGGCTTACATAATGTACCATTTGGGACATAGAAGCCCAGTCCCACTCACTGCTGGTTGGAGGTAGATT-GAACCTGGGCT-TTGTGAGGGTCTGCCTTTGTCCCATGAGTGTTTCATTGCCTAAACAGGTAAGTGTGTGAAGCAGATACTGGTTAGTCAGCATTCATTTAGCAA-TGACTGTGTGAAGATTACTCATATAGG--TCTTAACCTCTAGGGCTAAAGGAAGACAGTACCACAGGGGAAATCATTACTCTGTGACTTCATTACAGATCGCCATAAGCGCTTAGCACAACTGCTGCAACCTTCCAAGAGGAATCCTCACTACCAGACCTTGGAGCGGGATCTTATTGAACTGCAAGAGCAGCAGTTGTTTGAACTTTTTGTGGTGGTATCTTTACAGAAAAAGTCATCAGGAATAAGCTACATTCCCCAGATTATACAGCAGTTCCCTAGCAAGGTAGGCTCATGGAAGCCAACAGGCATTCAAGAAGGTTCCTATGTGCTGtttatgtttatttcctttctttttatttattgttatctCAACAAAGTTTGCCCTCTACTG---TAGGATCT

a score=30083
s chr3           103151771 1067 + 160039680 ATACCACACTTTTGTAAGAGTCTTCTGTGCTGAAAATTTACAGGAAGTCACAACCCTATAATTAGGTAGCAAAG--------CTAAGGGAA-TGATTATATACAGGGCAACATTTAAAAATAGTACCT---CTAAATAACATTTATCTGCCTTTTCTAAACATCTCTGATTATTAATCAGATAATGATTTCAGCTGGCTAGGTTTTTGCTGT--ATAATAGAAGGGATTTTTATTTATCTTAAATTCCATGATTCATAAAACACCGGCCTCCCACCAGGCTGAGAACTGAGTCCAGCTGCTCTTCTGGATGAGAAACT---TCAGCACTCTCTGCCTTACCCTGGGTTATGGGGTCTTCGCTGGCTCAGTCTGCTCGTGG-----GGTTCTTTATTCTTAG--GGTGCTGTCAGTCC-----------------------------TCTGTATTGTAAAGCAGCGCAAG-TGTCCCTGAGAGAAACTCTCTCGGGCTG--------------CGCCAGGACCAGGCTGAGGCTTGTTAGCTTCTGCTCTCCGTTTTCATAGGTTGATGTT--CTGTGCTGCT--CTCTCTCAGGGTGACCATGGCTACAAGCAGTCCAAAGACACTGAGGAAAGGCTCAAAGTCATCCCCAGGTTTTGTTTTCCTGATTCAGAGGACAGCGCACCAACCTTAGAACTCAAGAGGTAAGTCAGCT------CCTGATGGCCGTTTGCTGGAACTGTGTACAGAGTCCATCTCTGACAAACGGGTAGAGTCAGGAGCAGGGAGCCACATGAGTGACCACTGCAGAGCAAGCTTCATTGG--GGCTGGGGAGGAAT---------------------TAGAGCTCAGGAAAGAAAAGCAT----TGATTTCAGTGTAAGGAGAAGCAAATTTGCGAATACCCTTAGTTTACCAATCCTTC-----AAAATGGGTCCACATCACCTTCAGTTAGATAATGGCCCAAAATAACTGGG------------------------TTAAACCTAGAAACAG-TGAAGCAGAACAATTGTAGTTGTCGTATTTCTCCTTTAAGTTGTCAGAAAAAGCCACAGCCCAGATTCTGTGTTCCTGTGTAGGGTGTTTCTTTGTGGGTCTTGTACAGAGGGAGAC--CTCAGCCTAATAGATGTGGGTA-ACTG-------AAGCATTAAAGGATTT
s HiC_scaffold_1 113436261 1182 - 233722169 ATACCACACTTAAACAAGTGTCTTCCATGCTAAAATTTAACAGGATGTTGCAAAACAGTAATTAGACAGTAAAGATTGTATGCTAAGGGAAATGATTATATATGGGAGGAATTCTAAAAATAGTATCTTTTCTAAATAACAttcatctcctttttcaaaaCATCCTTGATTACTGATCAGAGAATATCTTGAACTGGCTTAGTTTTTACTGTCAGTAATATTAGACATTTT-ACCTATCTTCTATCCCATAATTCATGAAATAC-GGATTCCTATTTG--TGCATCCTGAATTAGATTGTACCTCTAGATGAGAAATTATTTTCACCCACCTTTCTTAACACTAGATTATAGTGTCTCCACAGGTACCATTTGtgtttaaaaatagtttccttatttttagtAGCTGTTCTTAGTAcattcttcttgaatttttaatcTTGGCTTTCCTGTTTTGCTAAGCAGtacaaaacaacactgagataatCTGCTTTGGGTTGGTTTATACCTTTTTTCCTAAGACCAggctcag---tttttatttttattctccacCTTCGTGGAATATTGTCAGCTGTGGTATTATCTTTCTCAGGGTGATCATGGCTATAAGCAATCAAAAGACACTGAAGAAAGGCTCAAAGTTATcccaaaattttgttttcctgattcaGAAGAGTGGATACCAACATTACAACTCAAGAGGTAAATGGGCCACTTTGTCTTACTTCTCTTTGTTGCAACTGCAAAAAGAG-AGAGCATTGAGAAATGAGTAGAGCCAGAAGT--GAAGCTGTATAAAT----ACTG----GAAGGATGcagtggaaggaaaggaagaaatagaattaGGACATTTCCTATGTgggactcaaaaaataaaaatacaaaataattttagtgTCAAAGAAAACAAGTTTGAAAGTCTGTACAGTTTTCCAGTTCTGTAGAAAAAAATAGTTCCACTTTACATAAAATAAGACATGGGACaaagaggacaggaaaagaagactTGAACTTTGGGACTCCAGACCTAGAAAAAGCTAAAACAGAACCATGTTCctcatcttatttctccttcaagTTGATAGAAAAAGTCACAGTTGAGACTCTATGTTTCCCTGTGGAGCTTTTCT------------TATAGAGGGAGAATGTTCAGTTTGGGAGATGTGAGTATATtgagaagaaaagaattaaagaattt

a score=22930
s chr3           103153282 1451 + 160039680 TCTTTTCTATCACTGTTCCATATGGCCT--CAGAACCAAACCGAAGAATTTGCAAGGGAGAAAATGACATTATCAAGACCCTTTACAGCTTGCTTACCTGTATGTTTGGCTAAATTACATGTTCAACAAAAGGGAAACAGGATTGATTAGTAGCTAATGAGCGTAAATAAGAAAAGGGGGAGAGCAATACCAACAGCTTGTGCCATACTCACTCACTTAC-CAGGACA--------AGGCCGGGCCCTCTGCAGG--TGAATATGACTTGAGATCAATG----GCTATTT--------------CTGTTGCCTCC---TAGATCACAAA-----TG---------TCTCCTTTTACTTGTTCAGT-------GAATGCCTTAAGC----AGCTGTGTTTCA-------------TTTTGTTTTCAGTGAAACCTTCTCCTTCGTGCTGACTGGAGAAGATGGAAGCCGGTGGTTTGGCTACTGTAAGAAGCTTTTGGTGAGTTCCAGATTGGTGCCACAA----AGTTGGTTAAGGAACAAGAAAGACCAGCTAGCAACTTGAGAAGAACTGTCCCTACATGACTTTAAGGGTTCCTTAATTATTT---------GCACAACCAAGAAGCTCCATTAggg-----ctagacatggcttggtggt----------tggtcttccagagggcccagcttcc-----------actcccagcag------ccatgggaagggt------ggctcagttatgaatatagaactccagtc----------ccaggggatctggtgccctcttctggcatgtcacaggcactgcaca--------cacaggaacat-------acatgcagacaa--------aacacctgtacacatcaaa-------caaaagtaaaGTTTTTAAAAAAGAAATTATGGTAGCTTTACATAGTAAGAGCAAGGTGAAGGTCAGCCATAGAATGATCCAGAATAGAAAGGCTGAGGGTTTCACTGGCTTGTTCCTTTGCAGTAGAGAAAGTAACCTAGAGATTGAATGTT--------------TGAAGAATACTGTCCAGAGAGGTGGCGGGAGAA-GCCAGGTTCCTCGTCCTCTATCTTAGGTCTTGTCTTTTGCTTGGTCACTAAGCCTG-------GGGGAGTCATGCTTTCCTCCTGAGTACTC--CCCACCCTTTACTGT-CACTCAGGACGACAGGTTCAGCTCCTGCACTGACAATAGGAAAAGAAGCCTATGCACA---------CTCATAGTCT-GTCGACTTCAGTGT-CTGGGGCAAGTG--------------------------TCAGCCACCA--------------------------------GAGGAGGGGTCTATTAAATAAATATTAACAG-TTAAAATTAGTGAACCCTTGCTCTGCTTG--TTTTGTGTGTTTGCAGCCAGAAGGCAGGGGAAAGCGGCTCCCTGAGGTGTACTGCATGGTTAGTCGCTTGGGCTGCTTCAATCTTTTCTCAAAGGTGAGTGAAG----CGAGT----------ATCTGTGGGAGAGTGATGGCCCTCTAGGTCTGAGGCCGTTTTA-TTGCTGCCGGCTTCACTGGAGAGTACTGAGTGGCACAGACTTTAATGTACTACTT--GAAAAGTACCCT-CTGATGGGTGAAGAGCCACAGGCTCAGACTCTCACgatggctc
s HiC_scaffold_1 113438386 1658 - 233722169 TTTTGTATACCACTGTTGTGTATGGTCTTTCAGAATTAAATAGAAGAATCTGCAAAGGAGCAG-TGTCAC-ATCAAAGTTCTTTATAACTTACCTAC----ATGTTTGACTAAATCAGATatgcaacaaaaggaaaatagaatt----agCAGCTA----GAGTAGCTAAGTAACAGAGTAAAAAAAGGC-AACAGTTTATCCTGTACCAGTTTGCTCACTCAGCACAGAATCTTGAGGCCAG----TCTTGAGGCCTGGACATTCCTTAGAAGAAATGTgacattatttaataaaatgtcataTTATTGCCTCCCCTTTGATCACAAAATGACTGATATTAGGCCctatttttagttgtttattCTATGAGGAATGCCATACATGGTTAGTTGGATTTTAGAATAACAGTTGATTATTTTTTCAGTGAaactttctcctttgttttgactggtgaAGATGGAAGCCGGTGGTTTGGTTACTGTAAGAAGCTCTTGGTAAGTACCAGACTTGTACTATAGTCTGAGTTGGTCAAGAGACAGTGAAGTCAAACTGGGAAGTTCAGAATCACTATC--TAGatgagttt---gattttttatttgtgtctttttgagacaggatctcaaagtgcagttcaggatgaccttgagctcactttatggtcttgaacttgtggcaatcctcctgcctcagcctcccaagtgctgggattctgtGTTGTTTATTCTATGAGGAATGCCATACATGATTAGTTG-GATTTCAGAATAACAGTTGATTATTTTTTCAGTGAaactttctcctttgttttgacttTCAGAATAACAGTTGATATTTTTTCAGTGAAACTTTCTCCTCccatgtgcaccaccatgcccagcttctggaGGAGTTTGAGGACTCCCAATGATTAGTATTTTAAAGAAG---CTGTGTTAGCTTTATACAGCAAAACAAAGGTGAAGTTCAGTCACAGCATACTCTAGAATAGAAAG--taaggattt----attttatttgtttacaaTAAAGA------CATAGTGGTTGAATATCAGTCTGGCCACATGTGAAGAATGAACTGCAGTGACCCAACCAAGGAGTGCTGAGATAC----CAACCATGTTAGGGCTTTCTTCTTGTTTAGATGCCACCCCTTCACCTGTAATAAATCATGCGATCGTGGTTAGTACTTTGCTCGTCTTGCACTGTTCATTGAGGATGGAGGCCTTAGGTCTTGCTCC------ATGCTAAGGGAGTCAGGTACAGTGGATGTtcttgtagtcccagctactcagggatactgaggcaggagcattgccagAGCTCAGAAGTTCCAGATCAGCAAGAATGACATAGTGAGATCTTATTTCAGAGAGAGACGAGGGAGGgaatattaaaagaatattaatGGGTCTTAACTACTAAAAACTTGTGCTGTGTGATTGTTGTTTTCTTACAGCCAGGAGGCAAAGGAAAACGACTCCCTGAGGTATACTGCATGGTTAGTCGCCTAGGCTGCTTCAATCTATTTTCAAAGGTGAGTGAAGAATCTGAGTGAAAAATGGGGTCTGTGAAAG-GTGATG-------AGCACTGAGAAAACTTTGCTTGCTTATGACGTCACTGGACA------------ATAGACTTTACCATACTGCTTTAGAAAAGTTCTCTATTGATGAATT-AGAACCACAAGCTTGAAGACTAAATGTAGCTC

a score=4310
s chr3           103153541 167 + 160039680 ATCAATGGCTATTTCTGTTGCCTCCTAGATCACAAATGTCTCCTTTTACTTGTTCAGTGAATGCCTTAAGCAGCTGTGTTTCATTTTGT----------TTTCAGTGAAACCTTCTCCTTCGTGCTGACTGGAGAAGATGGAAGCCGGTGGTTTGGCTACTGTAAGAAGCTTTTGGT
s HiC_scaffold_1 116799740 172 - 233722169 ATCAGTTGCTCTTTTTATCCTCCTCT---CCACACCTGACACCATCTTCCTGTTT--TAGAATCAGTAAGCAAATGCAAACCATGTTGTGTCTGGTATTTTTTAGGGAGACCTTCTCTTTCGTCCTGACCAATGTGGATGGGAGCAGGAAGATTGGATACTGCAGGCGCCTTTTGGT

a score=35477
s chr3           103155962 1864 + 160039680 GATTTCTTTGTTTCTGGTCTGAGGCCTTAATAAACTGTGGGGTGTGTTTGTTGGTCTGTGTGCATGCACATATGCAGATCCTGGATGAAGTAGAGAAGAGGAGAGAGATGTCTCCAGCCCTTGTGTACCCATTCATGCGAAGTGTCATGGAAGCCCCTTTCCCAGCTCCTGGCCGCACCATCACAGTTAAGAGCTACCTCCCTGGGGCTGGAGATGAGGTAAGTAAATTCATCCCCTGAAG------TAGCCACTTCAAAGCCAGCCTTGCAGCGACTGGTACAGTTGCCAGGAGCTTGTTCATGGAGGAATTGTTTTTACCTTGCAAGGGAATGGGTGTTACTTCCTAGAAACACTGAGTGAATATGTGAGGTAGTTAGTTGATCCTCGGCCCCAGG--------TTTCCTACCT-TACATAGATTGGGTCC-CTCTCTAGTGGCAGTCTCAACATGATAAATCTcacacacacacacacacacacacacacacacacacacacacacacacGTATATATATATGTATTTATCAAATGAAATTAT---TTTTACCAGAACTTAACAGCAGCTTCATAAACCCTTTGTGCCACACCTCCCCCTGATCA----------CCacacggtatcacttgttgccctagctgtcctagaactctctgtagtccaggctggactcgatctcagagatccacctgcctgtgcctcttgagtactaggatttaatgaattagaagtgcgccaccctacccTACCTGGCCCAAAGTAACAGACGTTTTCAGACTAGAGAAAGAGCAAGATGGTCGGTTAATGCTGCCGTTTGAGGGTAAGGTCCAGCATCAGCTC-------TTGGATTTCCCTTGTCTTTCAGTCAATTGAACTCTGCCGACCACTCGATTCACGCCTGGAACATGTGGACTTTGAATGCCTTTTCAAATGCTTGAGTGTGCGTCATCTCATCCGGGTCTGTGCCTCTCTCCTTCTCGAGCGGAGGGTAATCTTTGTTGCTAACAGCTTAAGGTAAGAAATAAGT----------------GGAATGTTTTTCA-TGCTGGTGT---------------------------------------------------------------------TTGGCTTGCttttattttattttttatacaatgcaaatatattta-aaatatCTAGACCTAgggctagagacctgactcactaattgcagtacttgttcttgcaaagaacccagattcggtttccaagacccaAAAGG--------AGAAGAAAGAAATTGAAAGGCTTCTGTACA--------------AAATCAC----AAAGAT----------agctgggtatggtggt-------aacacctttaacaccttgaacacttaggtagcaggagtagtcagatcttg----agtttgagaccagccaaacctacacagtgaagctctatatcaaaacaa------------------acaaaaAAACCAACCAACAAAACAGAAAACCA-AAGGCATTTCTAGCTTTTGTTTCATActgtgttatc---atctacccaggaggcctgaggcacaagaatcattgagcctaggagttcaaggaca-gcctgggGTTGCCCCCCAAATCTTTTAAAAGTACCAGTATTGTTTTTCATGCACACATCTTTTTTT--TAGCATAATAAATTA--TAGTGAACCAGACTGAGATGACTGTTAAAATGACTACGTATTCACAGAATTGCTGATCTGTGA----AGGCCAGTGCGGTCACTGTGTAGTTCTTTGATGTAATATCTGAAACTCATTCTGTGTGTTGCTTTACCTGTGACATCATGTGCTTTCTC--CTGTCTAGCACCCTTTCAAAATGCGGCCATGCTGTGGTAGCTACACTGTATCCGTTCACCTGGCAGCACACCTACATCCCAGTGCTGCCAGTGTCCATGATTGACATAGTGTGCTCACCTACTCCGTTCTTTATCGGGATCTTGTCTTGTTCCTTACCCCACCTCCAGGACCTTCCGATTGAGGAGGTAAG
s HiC_scaffold_1 113440934 1803 - 233722169 gacTGTTATGTCTTTGAACTgagttaataataaaata----acatattttttg-----------------tGTGTAGATTCTGGATGAagtagagaaaagaagagaaatgtctCCAGCCCTTGTTTACCCATTCATGCGAAGTGTCATGGAAGCTCCTTTTCCAGCTCCTGGACGCACCATCACAGTCAAGAGCTacctccctggggctggggatggggTAACTTACCTCATTTCATAAAGATTTGATAGCCATCAAAAAGCAGGTCTTGTACCA--TAGGCCAATTTCCAGAAGCA-------AAGAGCATAGTTTCTTTCTATAAATGAGAAGTATTTT-TTCCCGAAAAGCACTGAAGAAACATTTGTAATG--CAGTTGAACCATGACCCAAGACCTAAGAATTATTTACCCATACATGGACTAGGTCCACTCTGTACTAAAAATTTCAGTGTGATAAGTAACA-----------------------------------------------AT-TATACATATTATTGTCAGATTGAATGAAGGATATTGCTAGAAatttacagaa----cagaaa-----taagatACAGGATCTTGGGATTAGAATAAGCAGCTTCACAGTCTT-CCTGTGGCCCCA-------TAGA-CTTTTTGTAGT---------------------AGACCC---------TTTTTCTTGAATATAAG-----------------------------------------------------------------TAGTAAAGGCATAAGAGAATCTGCTAGTGTTGTCATTCAAGGTTGTTTTCCAACATCCACTCCCCTGAATCAAATTT---TTACATTTCAGTCAATTGAACTCTGCCGACCACTAGATTCACGATTGGAACATGTGGATTTTGAATGCCTTTTTAAGTGCTTGAGTGTGTGCCATCTCATCCGGGTCTGTGCCTCTCTCCTGTTGGAGCGGAGGGTGATCTTTGTTGCCAACAGCCTAAGGTAAGAAAGAAATAAgttaaacagggctggggatgtagctcagtggtagagtacccaGCATGCCCAAGGCCCTCGCACCATAAATAATAATATACgaaaacaaatatttaagtgAAATATGTTACTTTATACttattcttgctattttaaaatttagatatatttataaaaatctagAATTAG-------TCTCTGATTACCTAA----------TGCTATAGCAAGG-----TGACTATAATTCCAGAAGCTAATGGGTCATTTACATTAGAGTGTAACGATGacttttctttatacattattTTTGCTTAAACTGCTGTTAAAAATTGGTACTCCCAGCCAAGTGCAGTGGTTGGCACCAGTATtcccagcttttgggaggctgatgcaagatgATTGTTTGAACGCAggagaagttcaagaccagctggggCAACATAG-GAAGAACTATCTCTTTAGAAAATTGTTACTGCTTTTCTACATGCACACTAATTTCTAGTTTGATAAATTATAAAGAA--TCTGGGTTAAGGTTAAACCTTTTTCAGTTAAATGAAGCTGAAATTTTTaaggggtggggat-at--agctcagtggcacaagcacctgcctggg---------------------aagtacaag-----------gtgctgagttcaTTTCCtaatacctaaataaataaataaataaataaaattaaaa----cattaaaactaaTGCATACTCGTGGGGTTGTGAATCTGTGAACATAAAACAGC---ATCAGTATGGCATTCTTTACTGACATAGCTAAAACACCCTGCATGTGTTGCTCTGTATCTGACACTATTCACTTTCTCCTCTGGCCAGCACACTGTCAAAATGTGGCCATGCTGTGGTAGCTACCTTGTATCCATTCACATGGCAGCATACCTACATCCCAGTCCTTCCGGCATCTATGATTGACATTGTGTGCTCACCTACCCCTTTTCTCATTGGAATCCTATCGTGCTCCTTACCACAGCTCCAAGACCTACCTATTGAAGAGGTAAG

a score=5803
s chr3           103156034 152 + 160039680 TGCAGATCCTGGATGAAGTAGAGAAGAGGAGAGAGATGTCTCCAGCCCTTGTGTACCCATTCATGCGAAGTGTCATGGAAGCCCCTTTCCCAGCTCCTGGCCGCACCATCACAGTTAAGAGCTACCTCCCTGGGGCTGGAGATGAGGTAAGT
s HiC_scaffold_1 116801841 152 - 233722169 TATAGATCCTGGATGAAGTGGAGAAGAGGCATCAGATTTCCATGGCTGTCATCTACCCGTTCATGCAAGGCCTCCGAGAGGCAGCCTTCCCTGCTCCTGGGAAGACTGTCACCCTCAAGAGCTTCATCCCTGACTCAGGCACAGAGGTGGGT

a score=3940
s chr3           103156816 166 + 160039680 CGACCACTCGATTCACGCCTGGAACATGTGGACTTTGAATGCCTTTTCAAATGCTTGAGTGTGCGTCATCTCATCCGGGTCTGTGCCTCTCTCCTTCTCGAGCGGAGGGTAATCTTTGTTGCTAACAGCTTAAGGTAAG----------AAATAAGTGGAATGTTTTTCATGCTGG
s HiC_scaffold_1 116803185 176 - 233722169 CGGCCCCTGGACTCTCACCTCGAACATGTGGATTTTAATTCTCTGTTACAATGTCTCAGCTTTGAACAGATTATTCAGATCTTTGCCTCTGCAGTACTGGAAAGAAAAATCATCTTCCTGGCAGAAGGTCTCAGGTGAGCCCAGACACTGAATGGCTAGATTGGCCTTCATCCTGG

a score=4687
s chr3           103157622 213 + 160039680 CATGTGCTT--TCTCCTGTCTAGCACCCTTTCAAAATGCGGCCATGCTGTGGTAGCTACACTGTATCCGTTCACCTGGCAGCACACCTACATCCCAGTGCTGCCAGTGTCCATGATTGACATAGTGTGCTCACCTACTCCGTTCTTTATCGGGATCTTGTCTTGTTCCTTACCCCACCTCCAGGACCTTCCGATTGAGGAGGTAAGATGGAGTAA
s HiC_scaffold_1 116805461 215 - 233722169 CATGTCCTTGTTCTCTGCTCCAGCACCCTGTCTCAGTGCATCCATGCTGCTGCTGCACTGCTGTATCCCTTCAGCTGGGCTCACACCTACATTCCTGTTGTCCCCAAGAAGCTTCTTGACACTGTCTGCTGCCCCACCCCCTTCATGGTTGGAGTACAAATGCGCTTTCTGCAGGAGGTTATGGACAGCCCAATGGAAGAGGTATGCTGCAGCGA

a score=27855
s chr3           103161072 832 + 160039680 TCTTTTCATTTATGACTGATGTTTTCATGAGCAGCTTAAA---TTTCACATTAACTTAGTGAAGAGGAAGATTCCCTCCTCTGTTATCTCCCT-ATTAGTTTGCTTGTGAGATTTTGTCTCTAACTCCACCTTGTGCTTCAT-TCGTTTGTAAATAGTGTGGTGTAGCGATGACTTGGGGATTTCCCATCTCTGGAGCGACCCACCTCT-TCAGTATCGCTAGCTGAAAAGGCCGTTCTTCC----CCATTTCACCACACCGACTCCGTAA-ATCCCTGTAATATGTAT-TGTGCA---CATCTTTTTCTTTTT---------AAAATTC-------------ATTAGTTGTTTTGATGGATTAACTTTTAAATTGGCTGCAATGTTAAGTTAATTTTGTTTGAAACTATTCCCATGGCCTGAAAGAATCAAAAGGC------CCATCCTGATCTGGCAGCGCCTGGT----CTATCTGTGAGCGTCTCTGGTTTAACCTGCCTGCCTCCTTTATTTCATAGGTGCTGATAGTTGATCTCTGTGCAGACAGGTTCCTACAGGAGGTGAGTGACAAAGGAGATGGTTACATAATGTTTGGGGACACAGGTGTCTCTGTAGGCAATCACAATTAGACAGAAAATACGTGAAAGTACTTAGAGAGTATGACTCAGAAAGAACTTGCAGGTCATACTCATCTCTGAGTTGACA--CTGCAGCT-------AACCATACAAGATTGTCCTGAAACTTTTGGCTTGAGTGTATAGGTGTCCATCCCAAAGGAGGAAGGAGGAAACAGCATAAATGCCATGCCATTCTCAAAAGAAGTAACCATCCCTTCACCTCCAGAGGGGTTGG-ATTTAAGCCTCTAAGTTAGTAAAATATA
s HiC_scaffold_1 113445290 836 - 233722169 TCTTCTCATTTGTTACTAGTGTTAT----------TTAAGGTTTTTAATATTAACTTAATGAAGA------TATCTTCCTACAatatcttctttattattttgcct-----CTTTTAGCTCTGAATCCACctagtattttatgttttttgtaaa--ATGCATATTAGAGGTCATTTG----TTATCAAT----------AACTACCTATGCCAGTACCACCTATTGAAGAGACTATTCTTCTACCACTATTGTGTTGCAGTAACCTTTTAGGAGTCTTTTACTCTATAAATGCACataccattattttctttttgctcgTACCATTATTTGTTTTCGTTTGCAATTTGTTGTATTGGTAGGTTAACTTTTAAATGAGCTACAACTTTGAGTTAATTTTGTTTGAAACTATTCCTGTTGCATGAGagtctcaaaacttaaaacacCCTTTTGATCTGGCAGTGCTTGATGTATTTATCTGTGAATGTCTCTAGTTGAACCCGCCTGGTTCCTTTATTCCATAGGTGCTGATAGTTGATCTCTGTGCTGACAAGTTCTTACAGGAGGTGAGTGACAAAGGGAATAATTACATG----TTTGGGATATATATTTCTGTGTAG------ATACTTACACAGAAAATATGTGAAAGTACTTAGAGAAGATGACTCAGGCAAGAATTTTAACTTCTACCCATACTTGAAATGATAGTTTCTACCTATCCTTGAATCATACAAGATTGACCTGAAAAATTTGGCTTAGGTTTATAGCTGTCtgttccaaa-aaagaaagaggaaacagaGTAAGTGCCATG-----CTCAAAGTAAGTAATCATCCCTTCAACTCTAGATGGATTAACATAAAAGCCTCTAGTTGAGTTAAATTTA

a score=13439
s chr3           103162953 374 + 160039680 CTCTCATAAGGCTCATGCAGAG--------TTGCTTCTCTCTCAGGTGTCTGATGAGGATGAAATTCTGCCACCTAAACTTCAAGCAGCCTTGGTGCAGATTTTAGAAGATCGAGATGAAGTCTTGGCTCAGGAACAGCAGTTTTCACAAGGTATGGG---------CTGAGGACTAAAGATTAAAGCAGTGAACACTCACTGAAGACCCAGCATTCAGTTAAAGAATGTGCCAAAGTAG------------TGCACCTTGAAAA-TTCACACC----------CTTTCTTACCAGTCCCCAAAGTATTAGCCCCGCTTCTATCGCATGACCTTTGAAAATTACATTTATAGAATG--------------------------------CTTTCTTCCTATAGGTCTGT-CTCATATGTCATTTTTTCTTCGAATTAGTCCTGTCCTG
s HiC_scaffold_1 113447421 442 - 233722169 CTCCCTCAGAGTTCACAcaaaaatctcattttctttttctttaaggtGTCTGATGAGAATGAAATTCTACCACCTAAACTTCAAGCTGCCTTGATGCAGATTTTAGAAGAACGAAATGAAATCTTATCTCAGGAGCAAAATTTTTCACAAGGTATGAGACAAGTAATCCAATGATTTAAGTTtaagacagtaaatatttttttaatacacAGCATTCTGCATAAGGATGT--CAAAGTAGTATTATTTTTCCTGTATCTTGAAAACCTTACACAAGTAATCCAGTTTCCATGCTGATCTTTAATATGTCAGGGTCACTTTTatttcagggcctttg--cactacgTTTATAGAATGCTATTTCTCCAGATAGTCACCTGACTGCCATCCTTTCTTGTTATAGGCTCATGCtcgtatgtgattttttttttccctgagttcT-TCCTG

a score=21475
s chr3           103164771 480 + 160039680 GGGAGGAAAATGAAGGTCAGGAC-AGAAGCCATTTGCTTCTTGCATGCCATGGGCTGTGTAGCAAG-CTAGGAATGCGCATTCCTA-ATCCGTCCTCCAGTTTTTCATGACTCTTTAGACATGGCTTCCACATGGCTTCCACGTGTCAGGATTCCTCCATATATGTGGCTTCCACGTGTCAGTGTTCCTCCATACACAAAACT--AAGATTTTCCCTCTT------ATTTCTTTCCTTTTGAAACAGAGGTGACACTCAGTTCTCTGGTGTCGGAAGCGTTCGTCAGGTTTTTTGTGGAGCTCGTGGGGCATTATTCTCTGAACATGACTGTCACAGAGCGTGGGGAGCGTGTGTTCCAAAGGGAGCCATTCCGGAAGTCCCACACTTCCCGAAGTGTCCGCCACTTCCTAGATCTCTTCATGGAGACACAGATGTTTGCAGGATTTGTCCAGGACCGGGAGCTTCGGCAAAGCGGAGTTAAAGGTGGGCT
s HiC_scaffold_1 113458231 459 - 233722169 gggaaaaaaatgaagaccaGGATTCTAAGCTGTTTTCCTTTTGCAGGTCA-GATTCatgtagaaaaactgaaaatgagcatttttggatttatttttcagtcttttataATCTGTT------------------GTCTTCGTGGGTCTGACTTC---------TGTAACC----AGAGCCAGCATTTCCAGATAAGCAAAACCTAAaggatttttctcttctatttatttctttcattttgcaacAGATGTTACCCTCAATTCCCTGGTGTCTGAAGCATTTGTGAGGTTTTTTGTGGAGCTGGTGGGACATTATTCTTTGAACATGACTGTCACTGAACGTGGGGAGCGTGTATTCCAAAGGGAGCCATTTCGTAAATCCCACACTTCCCGACGTGTACGCCACTTCCTGGATCTCTTTATGGAGACTCAAATGTTTGCAGGATTCATCCAAGACCGAGAGCTTCGCAAAAGTGGGGTTAAAGGTCAGTT

a score=10640
s chr3           103166351 633 + 160039680 TTTAATTTAACTGTTTTCCAGGCTGGCATGTTGAACAGTCTCACTGAT----GTCTTCTTCGTAGGTTTGTTTGAAGTCCGGGCTCTTCAATATTTGGAAACAATTCCTGAGTCGGAACCCAGCGGGGTGAATAGAATTTTACGTAGTCTTGGTGAGTCGCTTTG---CCCTATTGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGATTAA------------------------------CCTTGTGGTATAAGTCCCCGAGTCATGACCATGAAGC-CTCTCTAGGTTGTACTCTTTGGGGATACATTTTAAAAAGTAGTTCTATTTAccagaaaataatgtatttatatatacagataaattttgcatataattctagggtgtcc----------atggacttcAGACTTAAAAT------CCTTGGGGGCTGGGAAGCAGAAGAGGATTGCCTCGGCCTTATTCTGCATTTCATAAACATGGGTCCTTCTGATTTTTAAATTCT-------GGACTGATGT--------------GAGGACAGTGGTGTGCC-TGTCACAAGACAATTGCCTTAAACTCTG--------GGCTTTGGAATGTATGCTCCTGATTAGACCCTGTCCTTAACTAGCTGAGAGACCGTGGGC-ATTTATGCCGCAGGCTGTGATTTCATCC---ACACCTTGGGT-TAGATTAGATCAG---------------ATGATAATCTTTAGGGACTTTAGAGAGGTCTCTTTTGA
s HiC_scaffold_1 113458861 854 - 233722169 ttttatttaattaagttCCAGTGTA-CATGTGTAA--GTTTCACCAACATGAGTTTTCTTCCTAGGTTTGTTTGAAGTTCGGGCTCTCCAGTATTTGGAAACAATTCCTGAGTCTGAGCCTAGTGGGATGAACAGAATTTTGCGGAGTCTTGGTGAGTTGCTTTATTCTCCTATTAGTTAAATGTGACTGAAAAAAGCTTCTCAGTAAACAAGCTTCATCTCAAAAGGTTTTTTAATCAGATAGTACTGTAACTTCAAGTAGGCTGACCAGCAATTAAGGCCCTAGTTCCATCATGTTTTAGAAGAAAAAGTCTCTCAGAAATTAGGATTCCCCATCAGCATGTTTAGAGCACTTCTCTCAGGATCTCTGAACTATCCCTCTATGGTATA--TTTCCATGTCATGATTATTAATCGTTTTTTAAGTTATAGCTCTTGAAGA-GCCTCATAAAAA-----CCCTCTTCCCAGAAA--AATATGCTTATG---ACACACGAATTTTATATGATGTTTGTAGATATCCCCCCAAGCCTATGAACTCTAGATTAAAAAGAGCTGATTTTAGGGCCTTTGAGACAAAAGAAGA------------TATCTTGCAagtc---------------tttaatttttcagttctctTTTAGTTACGGTTGTTCAGTATGATAGAGGAGAACAGTGGTACAAAGTATCAAAGAACATGTA---TATATTCTGTTATAGTAGGCTTTAAAATATATGCCTCTAATTAAGCCCTGTCTTTAATTAACTGAGAAGCCATGGGCAAATTATGCTTTTGGCTGTTACTTCATCCTTTATACCATAGGTCTAGATTAGATCAGTGGTTCTTAGCTCTAATAATAATCTACTGGGAgcttaaaaaatttttccatga

a score=20071
s chr3           103169111 678 + 160039680 AGGAGTAGCACCTGGGAAAGGGAGTTTGTCAGTGAGGGTACAGTTTTCATTGATAAGTGAGAAATGTTGTGGTAAATGTCAGTTGTTTTCTGTAACCTTTGCCCACTGCTTTACCTGGCATGGAAAATACTCATTCAGACTTGGAAAGTGTTGTTTGTTGTACTGGGATACAACTCACTGACTTGTATAGTATTGTCATTGTCACTCATACTAGGGTGTCTGAATGAATC------------CATTTAAGACTGGTGCTGTGCAATATAGTTCCCACACATG--GGTCCAGGGAAGAGAACTGAGTCTGT--CCTTTCAAATGTTAGT---GCAGCTCACCC--AGGGGAGCTCCTCCCAGACAGCTCTCTCCTTTCCTTCTTCCTACACTCCAATCCCGATGGAACAATTCATGACTGGTTGTTTATAAGATGGGGA-AGGAGGGTTTACTGTGGTCAATCATGACTGTCCCTCTGCAGGGAGAC--TGCTTTTGGG-----AGAGTCTTAACCTTCTTAAGATCTAAAGCTGCTTCCTTTCCTTGAGTTTGTTGTAATTTG-TTTTTGTAAA-TGTTGTGAATTCTAAATACGTTTGTAAAAAGAATTGTTCAATATTTCTATCAAATGTTTACAGATAAAGGCATTTTAAAAAAATTCCCACAGAT-----CTCTTGGAGAATTTAAAACAAATGCACATAAGATGtgtag
s HiC_scaffold_1 113464482 669 - 233722169 AGCAGAAGTGACTGGAAA---GAGTTTGTCAGTGA---TGCAATATTCGTCAGTAA-------ATGTTATACCAAATGTCAGCTGTTT-----AATGTTTGTTTATGGTTTTAACTGGCATAGAATATAGTCATTCAAATTTACAAAACCTTATAAATTGTATG-----ATAGTTTATTGACTTGTATAGTGTTGTCAGTATGAACCAGTGAGGTATGCTTAAATGACTCTGAAGCAGACACCATGTAAAACTGGTGCTGTGTAATATAGTTCCTGCAGATGTGGGTCCAGGGATTAGA-CTGGGCCTGTGTCTTTTTAAACGTTGATTAAACAGCTTACCCCCATGGGGGCATCTATCAAACA--TTTCCCCATTTGGTCT-CTGATACCCCAAccttaaaggaaaaattagagATTGAGGATTCATAACATGGGGATAGGAGGGTTTACTGTAGGGAGTCTTGTCTGTGCCTCTGCAGGGAGACTTTGCTTCAGGGATGACAGCGTTATGTTCATCATGCAGTCTGAAGCTGC-----TTCTTTATGTCGGTTGAGTTTTGATTTTTGTAAAGTATTGTGAATTCTGGATATGTTTGT-AAAAGAACTGCTCGAGAATTGTATAAAATGTTTAcagat------attttaatgaa-----taaagataTTAAATCTCGgggaatttgaaataaa-atatttaaaatgtaaag

a score=21367
s chr3           103171633 1718 + 160039680 AATTACCAACTGCGCGTGCGCCCGAATCGAAGCCCCAAAGGCAGCGGCGTGTGTGACGTCATTCCAGGCGCAGGCGCAGTGGAATTAGA---ACCGAGGCTGCGCAGA----CTCAGAAGGCGCTCTTGAAGCCTAGTGCCGCGCGATGGCGGGCACGGGCTTGGTAGCCGGAGAGGTGGTGGTAGATGCGCTACCATATTTTGACCAAGGCTATGAGGCACCCGGCGTGCGGGAAGCGGTGAGTGCGGGTCATGTGCG----------------GCGGGTCCG----CCGAAGGCACGCCG------CCCTTTCCCGCCGCGACCCTGGCC--TGTTCTCGTTCTTAGGCGGCGGCCCTGGTGGAGGAGGAGACGCGCAGATACCGACCTACCAAGAACTACCTGAGCTACCTGACGGCCCCGGATTATTCTGCCTTTGAAGTAAGTGTGCCTTTGAA--------GTAAGCCAGGAGGCTTGCGGACTTTGATACGGGAGTGAGGGCTTTAGCTGTGTA-AAGTGAACTCCACCT-----------TCCAAGTTAGCTGGTGCCTGC--AGCTCGTACTGAGTGCCATG----TAGGTGTGAGTCGGTTTGAAACCGCCAGATGCGCATGTCACGGGCTTCGTACTACAAGAACCTGCGAAATGCTCCAT-TAGTTTCTGCAGATT-----TGTTTAATAGTGTGCACCTCCgtgtgtgtgtgtgtgtgtgtgtAGAAGAGTCATGGTACATTTCACAAAAGGGCCCTTTATTCTCTAAGGTCCACT---CAAGAACAGGTATCACTCACGAGATTTTAATATTTATAATCTTAAGTACCTGTACTCTTTGCCACCCCTGGAGGGAGATTCTTTTGTACCAAGTCTCAGATAGTTAACAGGTG--TATGAATGCCTGAACAAGCATGTCTAACTGCATGCTGTTTTTAAGTG-GTTATTCTACAAGTGCAACCAAAAAACACCACTTAGATGTT-GTTAGAAGCACTTTCAGGCTGAAAGGAGACTGCTCCATGCGCAGGGATGTGTGATACTTCGGATCTAGATGCcaggtttttaaactg------ggttgtgactc--ctcagtgggggtttcataactgatgtgggagctgcaagaaatttggcaagagtaaaa------agtactaacccag---aaattaattgaaaactcaagtcc-cagatctaagctctggtccatgttacatcatgtgacttcaccatttacactgtacccaaacag------------------tttacactg--------tgtcagtt--------cgtcatgcagcagcgg-----------------------------------------------------------agacttcctgaaatgattcaagactgttgtgtgttgtgaattacaacgtGACGTGGGGCTGGGATTAAAGCTGTTTTCAGAGTTCCACAGCTGGCTG------ACTACAGGGCATTGAAAACTGCTGGTTTAGGGTTAATCCTTGAGAGGTGGACTCTTCTATGTCCACCTCCTTTCATGCCTGGGCAGAATATGGAATTAAAGAATATGCCTATTTCTTCAGATTCTAGATAGAATTAACCTC----AACTGGGGGATGTG--------------TCAGTG---------------------------GCCCTGGGTTCAAATATTAGCA----------------------------TCCttttttttttttt-----------------------------------------------------------------ttttttt-------------ttGAGT----------------------------------------------------------------AGTGATT---GAGAAGGGAAAAGATTCGCTATAATGTGTAGTACAAAGTATAAA--ATCTCAGTAAACTGCATTCATTATTTTC--------AGCATGATTCTGTTACTAATTCTTTGTGGTGTTTGTGCATCAGACAGACATAATGAGAAATGAATTTGAAAGACTCGCTGCTCGACAACCGATTGAATTACTCAGCATGAAACGGTAAGA
s HiC_scaffold_1 113466241 1969 - 233722169 AATTAGCATCTGAGCATGCGCCAAAGT---AGCCGCGCAGGC---GACGTG-ATTACGTCACTGGGGTTACGGGCGTAGTTAAACTGGACAGATCGAGTGCACACAGAAAATCTAGCAGAGTGTTCTTT----------CTCTGCGATGGCGGGCACGGGCTTGGTGGCCGGAGAGGTAGTAGTGGATGCACTACCATATTTTGATCAAGGGTATGAAGCGCCAGGCGTGCGGGAAGCGGTGAGTGCGGGGTGTCTGTGTTGGCTGACAGTGCTCGCTGGCCCAGTGCCTGAGGTGGCACCGTGCATATCTTCTGCTGCCTCTACCGTGGCCCGCGTTCTCGTTTCTAGGCTGCGGCGCTGGTAGAGGAAGAGACTCGCCGATACCGACCTACCAAGAATTACCTGAGTTACTTATCATCCCCGGATTATTCTGCTTTTGAAGTAAGTGATAGTTCGAGCCCAGTGTGTGAACGAGGATTCTTGTGAATCCTGATTTTGGATGGAGGGCTTTAGCTACACAGAAGTCACgtgttgcttttaaaatatctCCAGTTTAATTATTACTTGCTTAGCTTCT----AGTTACATGTCTTTAGGTATCCATGTATTGACAACAGCCAGATAAGCCTTCCTCAGAATTC------TGAGATCCAGAAAAGGACTCATTACAGGGTCCGCAAACTCTAAATGCAAaattttgtgtactt-----------------tttttgaataaaaattcttgtgtaaattctgaaagaaa---ttcTCTTCTAAGGTCCACGTTACAGAAagatgtttgaatt------ttttaatatatgtagGCGTAATTGTTGATCGTCCTTAGAACCGCTAGAGGGAGG--CTTTTAATTAAAGACT-AGATATTTACCAGATGGATGTGAATGACTGAACAAA---------------GCAGTATCTGAGTATGTACCTGTAAAATTTTGACCTAGAAATACAGCCAAGATACTAGTTAGGATCA-----------AAA-----------------CAggcaaatgaaata--------taaaatatca--tttctgAATTATTCAGTGGTAGAGACCCTGCCCATgttccttttctcctccattg----------------TTTGCCAAGAGCTAAATGTCAGAATAGCAGCCAGGACCAAAAAAAGTATAGATTTAGGCACGTAGACTGAAAC---AAATTATTCTATGCCTTAAgaattttctcttcctcctgttaTCAAAAAGTATTTAGGTCCGTGGTCCTTTACACTGGCTTCCTTTGACAATCGATTTGCAAGTAAGGCAGGAGTAGCCCTaggttcaattaaaaaaaaaaacaaaacaaaacaaaaaacagttacAAGCCTGCCCAGACTTCC-------ATTCAAATCAGTTA---ACTGGGAGTGAGAAGAGTAGATAGGGCTAGGATTAGAACTAAATTTAGAGCTCCCCAACTGACTGCAGTGTGCCACTGAG-ACTGAAAA----GGATTTAGGATTGATCCTT----------TCCTTTTACACCAGATTTCTT--GTTCCAGAGTA-AGTGTGGAATTG------GTGTATGTTTCTTCAGACTCTAAAGAGCATTTAACTCTGAGAATTGCTGAgtatagtaatagtaataattcagtggtagagcatgctCTTAGCATGTGCAGTGCTTTGGGCCCAGTCCTGagcagagaaaagtaaaaagctgggtgtggtggcacttgctgttttcccagaactctgggatgctgaggcaggaggattgaaggTTCAAGCGCAGCCTGGGAAAGTTAGCAAaaccttctcaaaataaaaagggttgagtGTATAGTTaaatgcaaagaccctgggttcaatctgcaatacttaaggaagaaaggaaggaagaaaatgaattggGGGAAGAGAAATGATCCCTTACAATGCGTAGTATAAAGTATAGCTTGTGTTTTTTGGCTG--GTTATTAATTTCAATGTGCTAATATGTTCTTGGAAGTAATTCTCTA----ATTTATACATCAGACTGACATAATGCGAAATGAGTTTGAAAGATTGGCTGCTCGACAACCAATTGAATTGCTCAGTATGAAACGGTaaga

a score=15928
s chr3           103174260 307 + 160039680 ATATGTCCATGAGA-ATTCTGTTGGAAGGAGTGATGAAGGCTTTGAAAGATACATTGGTTTG-------TTTGTTATGTAATTTCAGATATGAACTTCCAGCCCCTTCCTCAGGTCAAAAAAATGACATTACTGCATGGCAAGAATGTGTAAACAATTCTATGGCTCAGTTGGAGCACCAGGCGGTCCGGATCGAGAATCTGGAGCTGATGTCACAGCATGGATGCAATGCCTGGAAGGTGTACAATGAGTAAGAGGCG-----CTGGGCCTTCTCTTTCTTATCCTGTCCCACCCAGAGTTGCTAGTGTCTTTTAAAGT
s HiC_scaffold_1 113468718 315 - 233722169 acaggcccaCGAGTTACTGTGTTAGTAGGGAGGATGACAGTGTGGCAGGAtatgt-gatttaattttattttattgtataatttcagATACGAGCTTCCAGCCCCTTCCTCAGGTCAGAAAAATGACATTACTGCATGGCAAGAATGTGTAAACAATTCTATGGCTCAATTAGAGCATCAAGCAGTTCGAATTGAGAATCTAGAACTGATGTCCCAGCATGGATGTAATGCCTGGAAAGTATATAACGAGTAAGAAACTTCATCCcatttctcctcccctccctcccatgCCACCcagaggt----ttattttttaaaat

a score=7351
s chr3           103175514 272 + 160039680 AGATTTTAGATTTTTAGCAGAAAAACATGGCTTAGTATATAAA-TAGGCAATTC----TTCCTCAGCGTTACCAGATTTCAAGGT------GCCTGTGCGTT-CTTCCTTCTTTAGAAATCTTGTTCATATGATTGAACATGCACAGAAAGAGCTTCAGAAGTTAAGGTAAGTTGGTT-----TTTTATT------CTGTTT--GAATAAAATTTAGATTAGCCTCTGATAGAGAGGAAGAAAAACTACTAATACTATGTAGTCCTATGAAAGTAA-AAATTCAACTTTTATTAAGTA
s HiC_scaffold_1 113472362 289 - 233722169 aaatttactatttttagcaggaaaaatttgatttttgtatGCGCTAGGTAGTTCACATTTAGTTGGCATTACTAGATTTTAATGTATATTAgtctgattttcatttctttctacggaaatctagttcatatgattGAACATGCACAGAAAGAGCTTCAGAAGTTAAGGTAAattgttttggggttttatttctttcctgttttagaATATAATAAGGTGAATCCTTATGTGTGGGGGAACAA-------TAAGACTA--tagtcaaaaaataataatagatttattttttctccagca

a score=16347
s chr3           103176379 1048 + 160039680 TCATTTTGCATTTTTGTTTCTAAAGTGGTTTTGATTTTAGACATTAGGTAGACC---ATATAACGAATAGCTATTAAAATAC---TAAGTAATGTTAATAGAATTTACTGTGATATTTTTGATCTGTGTTTAGCATCTGGCACTGAGTTTGCTGTACCAAAGTGGAGGTAAAAATACGCTTGAAACCTGAAAACATTC----------TCTACAACTCCCAAGTCTGCAAACCTGGAAAGAACACCTT----GGGAGTTAGACAGGG---CATCAGGATA----------------------------------------CCACACTGC--AGACGTACACACATATGGGAA-AGAACCTGAAAGGACACCCACTGTCTTAGTTCATGTTCTCTTGCTA-----ATGATAGCACAGGCTTGGTAAGGTGGAAGGAAAAGACCTTTATTTTGACTTACAGTTTCGGAAATTCAAGGTTGAAGAACTGGGTCTGTTGATAACCCCCTTAGGGACAGA-TCCCAACATGGTACTTGGAATCACATGACAAGAGACAAGAGGGCTGCATGT--------GTGAGATTTAGTCTCTAACTATGAAGCCACTCATATTCAGTTTTTGGAGTTTTGCTCTGATAACCTTATCTTATCC-GGCCACCACCTTAAGTCTGCCTCTAACCACCGTAATTGGATCAGTTCCT-GCTCT--TAGTATCTCTCAATGGCTCTTAGGCTCCAGTGGGGATGTGGGTAG--AATAA--GCATTGAAAGTGTAGTGTAGTACTCACGGAACACCCCACAGCTGTAGCCAGGAAGA------GTCCAGGAAGGAGGAGGCT------GCAATCTATGTATATGTTGG-------------------------TTGGTTGGTGGT--------------------------------------TTGTT------------TGTTTCCTCCCTCC-----------------------------------------------------------------------------------------------------------------------------------------------CACAATGAATAAATTTTATGAAATTTGTAATTAAAAA--CAATTAAGATAAAGTTAATTCCTAGAATTAG-CTGTAGTTGTGTTTGTGAGCA--CTAAAGAGTATAAAGATACTCTATTGTACTA------TTGTTCTGTTGATTTTTGT--------------------TGTAAATAACTTTTTACAGGAAACATATTCAAGATTTGAACTGGCAGCGAAAGAACATGCAGCTTACAGCTGGATCTAAGCTGAGAGAAATGGAGTCAAAGTGAGTGT
s HiC_scaffold_1 113472534 1322 - 233722169 ttgttttggggttttatttctttcctgttttagaATATA---ATAAGGTGAATCCTTATGTGTGGGGGAACAATAAGACTAtagtcaaaaaataataatagattt---------attttt------tctccagcacctggctttgaatttgccctgtctgaataaaag-agaaatagg-TTGAGGTCTGAAAACATCTCTACTGGACATTTACCACTTTCAAGTCCACAGACATAGAAAAGTCACTTTTTATGGGAGGGAAGTAGGGACATTTCAGAATAATGTGTACATATAAcctgatttatatattttttaaaaaaccaacaatgTCTGCATGCATACGCATATGGGAACAGATGCTG------------CTTTTTTACATCATTTCATTTTGCTAGTAAGATAATACCACAGacc------------aaagaaagatttat-ttttgactTACAGTTCTGGAGCTCCCAAGTTGAGGGGCTGTGTCTGGTGACAACTTCCTTGCTGGCAGAATTCCATTGTGGTGCAGGGCATCACATGGCAAGAGTCAGGGAGGCTGCACATCTGCACATGtgtgttttggtct---------------------ttctgaCATTAGAAATCACCT----TGACCTTCTCTAATCCTAATCACTTCTAAAAGCCCACCCATATCCAGTATAGTTGGAATAATTTTTCGCTCTCATAATTCCTCACAGTGGGGATTAAACTCTAGCATGAGTTTTAGAAGGGAATAACCACATTTAAAGAATAGTGc----cttccagaa-attcagtatcaGTTAGCAGGAAAGAGAAATGTATGAGAAGAGAGAGTTTTGATTTGTGATCAGTGTGTTTGTTTGGGTGTGGgttctttaaaaatctattttgtttggttgtactggggaatgaacccagggcctcattcaTGTTAGGCattgttctaccactgaactatgtcctccctttttgaaaattttctcttgagacaggatcttactaaatcgcccagactgtccttgaatttgtgatcttcctgcctcagccacttgattaacagggattacagatgtacagcACTGTGCCCAGTTTGAAtgtgttttttgatttttcataatgagcacattttctgaaatttataaTTGAAAAGATAAATAGAAGAAAGTTAATTCCTAGAATTAGTCTATAATTGTGTATGTATCTCTTCTAAAGGGATTAAAGGTACCATCTGATACtggttatttttttatgtttagttttatgttAAACTGTAGTTGAGTTGCATAAATGCCTTTTTACAGGAAACACATTCAAGATTTAAACTGGCAGCGAAAGAATATGCAGCTCACCGCTGGATCAAAACTGAGAGAAATGGAGTCAAAGTGAGTAT

a score=12891
s chr3           103178223 484 + 160039680 TTTTTTAATGGAAAGTTAAAAATGTTAGTGCCCATAGTGAAACTACATATG--TTTAAAATAAA---CTGTGCAAGAAATTTTACATCCGCTCATTTTTCCCTCTTCTCTCTTTTTCCTTTGACTCTCTTTCCTAGCTGGGTGTCGCTGGTGAGTAAGAACTATGAGATTGAGCGGACGATTGTCCAGCTGGAGAACGAGATCTATCAGATCAAGCAGCAGCACGGGGAGGCCAACAAGGAAAACATCCGCCAAGACTTCT--AATGACT-------------CAGGCGACG------TGGGCT-CCGCAGAC-TCAGC------------------------GGGGAC-----TTTCTCGGAGCGACTG-TGGTGGTTACATGGTTAGAGACCATGGACTATGTAAACTGTTGTATTGCTTCTGTGTGAGTGTCTTAGCAAAATAAAG-TTGTCAACATGTTGCTGTTTTTAT-GCTATAAAAACCTGGTTTTCAGAATGAGTATGACTTTAGAATAATTTTGACATATTTTGTAGCAGAATT
s HiC_scaffold_1 113476274 511 - 233722169 ttttaaaatagaaagttaaaacTGTTATGACATTGAATAAAACcatatgtacatttaaaataaaatcttgtaaGAGAAATTTTa-gttgattaatttttttcttttttcttttc-------------cttttctagttGGGTATCCCTGGTCAGTAAGAATTATGAGATTGAACGGACTATTGTACAACTAGAAAATGAAATCTATCAAATTAAGCAGCAACAGGGAGaggcaaacaaagaaaatatccGGCAAGACTTCTGAAAAGACCAACTTGCTGGGTACAGAGGAAGAAAAGTTGGGCTGTTATAAACATCAGCCATCTAAATTTTTCCTAAACCATGAAGGACAATAGCCTCTCATAAAAACCATTAGTGGGTAAATGTTTAAAAACCAT--AATGTATGGATCCTTACATTAAT------TGTGTATCTttgtgaaataaagattatcaacttagtggtatttttataggtGTAAAAAACC----------ATCAGGCTGTCTTGATTATGATTTGGA-ATATTATGTTATAGAATT

a score=13663
s chr3           103246904 359 + 160039680 ttttttttttttttttttttGCGCCAAGATACACATTAGAAGGCTTTATTTGCGAGGGCAGAGGCAGGAGTTTAATCAAACAAGC-AAATCCCACATCATCATCTCATTCCTCAGACTCCTCC-------------TCTGCTGCAG---TGGACCAGAAGCAGCTGCAGGAACTGCAGAGCCTGGAGCAGCACGGAGAGCCCCAGCCCCGCCTGC-GGCACACTGGCGAGCTCGCCAACACGCTGGGCAATGATATCCTCACTGGTTTCTCTACTCGGCTAACTAATGGCCTTGTTGAGGTGGTTATTATCTGCCCTGATGCCCATGCTGTCTACAATCGTCGTGATATCTTTGGTGCCAGGAGAAGAGTTACCCCC
s HiC_scaffold_1 168723579 368 - 233722169 ttccttcctctttctttttaaagatatgaTGCATGC--AAAGGCTTTATTTGCAG----AAAGAAAGGATTTTAATCAAACAGGCCAAATCCCATGTCATCATCAGACTACTTGGActcctccctctctgctttcttctgCCGCAGCCATGG--CAGAACCAGCAGCAGGAGCTGCATAAC-TAGGGCAGCAGAGAAGGCCACAGCCCGACCTGCTGGCACAGTGACAAGCTTGCCAGTGCCCTGGGAGATTGCATCTTGAGTGTTTTCCCCATCTAGCTCACTGATGACCTTATCAAGCCCGTCATCTTCTGTCTGGATGCCCACGCTGACCAGGATCTTCTTGATGTCGTTGATGCTGAGGGAGGAGTTGCCTCC

a score=86042
s chr3           103278957 3595 + 160039680 TGAGATTCTCGGGATATAATATTGGTTAGAAACATGGTCTCCCAAACTGGCACATCAGCCGCAGGGACTTTTCAACATTCATCTGGTTTTCAACTTCCTGATTCTGTTTTGGGGTGTGGCCCTGGCATCTCTGTTTAGAAAAAAGCTCATTTGATTGGCTTTCAGGTATGTAGCAACGTTGGAGAATCACCTTAAGAAGCTAAAAATAGCTATTAGAAGACTTCTGTCTCACCGCAGGA--------GCCTATATCTGG-AGACTTTTGGGGTGTGTGTGTACGTGGTGGGGGGAA----CTCTGCGCAGCCGCTCTCGGGTGTCACAGC-CCTCTAGAGAACGCGGTCCAGCAACACCCAGCGAAGACCCAGGTGGTCCGCACCTCCTCGG----TAGGAGGCCTCCGCGACCAAGCGCGCGACAGGTGAAGCTTCCGCGGTGGCGCGCCCGTCGCTGGGGATGGCGTCGCCGTGGAGACGCTCGCTCGGGGGCGAACGCAAGCCGGCCTCCTACTCCTGCATGTTTTCCCTCCCTTCTTCCCGCACCACCGCGGCTTCGGCGCTAGCAGCCA-----CATCATAGA-GACCCAG-----------------TTCCACCAGCTCCTACCGAGCTACACAACTCCAGCCGGGTGGCAACAGACCACACCGAGGCGCGGAGCTGCATCGCGGTCTGTCCCGCGAGCGCGCGCGGCCGGAGTTCCCGCCTCCCTCCGGAGGACGTCG-----------GTGCGTACGTGCGCGTGCC-------CACCCCTcccgccccgcgacgcgagggcgggggcgccgcgtgcgcgcgcgcTCTCGTGcgttcgctcgctcgctcgctcgctacttcgctcgctcTcggcggccgctcttgctgtggctgcggctgaggctgggggcggcggcggcggcgcgagcggcgggcggcgcggggcggtccggcggGTTCAAAGAGGAAAACATGGCGGAAAACAAAGGCGGCGGTGAGGCAGAGAGTGGCGGCGGGGGCAGCGGTAGCGCGCCGGTAACCGCCGGGGCCGCCGGGCCCACGGCGCAGGAGGCGGAGCCGCCTCTCGCCGCGGTGCTGGTGGAGGAGGAGGAGGAGGA---AGGCGGCAGGGCTGGCGCGGAGGGCGGTGCGGCTGGGCCCGACGACGGGGGGGTGGCCGCGGCCTCCTCAAGCTCGGCCCCGGCCGCCTCGGTCCCCGCGGCCTCAGTGGGCTCCGCGGTCCCCGGAGGCGCGGCATCGACGccggctccagctgctgccccagccccggccccggccccggccccggccccggcccccgctcccgccccggctccTGGTTCCTCGTCGGGGCCACCTCTCGGACCACCAGCCTCGCTTCTGGACACCTGCGCGGTGTGTCAGCAGAGCTTGCAGAGCCGGCGCGAGGCGGAGCCCAAGCTGCTCCCCTGCCTGCACTCCTTCTGCCTGCGCTGTCTGCCGGAGCCGGAGCGCCAGCTCAGCGTGCCCATCCCTGGGGGCAGCAACGGTGACGTCCAGCAAGGTGAGCAGCAGGCCGCACCCGGGAGAATCTGG-----TGTGGCGGCTTG-----------------GGGTGCCGAGGGTGCTCGGA-----------------CGGTGCAGTGCAGAGAG----GTCTCCGAGACGAAAGCTACGGCCCC-GGGGACGGTTACCAGAGAAGCTGCACCGCCGGAGATATGGGGAGAGAGAAGGGAGGGGTGCCGGCTGCGAGGGGCTGGGGGAGGGGATGCTGA----GAGGGAGGTTTGAGGCGC-------------------TTCTGCAGAGGG-----TGGACTAAAGAGACAG-AAAAGGGGTGTACCGAACCCTCCGTGAGAAGTGAGTTGGGG------------TGGGAAGGCCTGGT-CCGACAGTGTTGATAGCTAGGGGTTGGAATGGATTGCTTATTGGCCTG--TTCGGTTAAGAGAAAGAGCTACCGATTAAATGG----TAATAAAAGACATTGGAGTCCTTGG-GTTAGAAGAAGGCACT-----------------AGGGTGACATTGCG--ATGAGGAGCTTGGTAAGTGATATTAGTTGTGAGGGGCCTGCGTGGTTAAGGGGAAATCCTGGGATTTGAGGATGAAGAGAG---GAACTTGGAAGGGAA--GAGTGTCAGGGAGAGTTGGGCTTATG-TTATTTCATTTGTTATGCATTAA--TAGCTCAAGTATTCAGGGCACTGTGCTA--GAACTGAATAAAATGCTCAGTGAGGACTCCTTCAGTCCAGTAGTGGAACCCTGTGTCACCTGAAGCAGTAGAGGTGTG-----GGTATCATGGTTGTGG--CATTAGAAGGAAGGCCTGG-----------------------CTGGAA-AGCTT------GAGTGACCACTTCGCGGGGGCGGACAGTATTCCCAGCACAGGACACTTTCTACAACTCT--AACTAAAGGATGGTATGTAA--GATGACTGGAAGTTAGATTGGATTAATTGGCTACATAGTTAAGGAAGTCCATCCTTCCAGTTTCTGGAAACTGTG-------------TTTGGATTTGAGATGCCATA-----TTGGATTTTTCTGTTTCCTAGAAAGATCTCTTGTGTAGTACTCTAGCAGGGTACTACATGCCCATTATGAAAGTGTTTCTATATAGAAATTAAATAAATATACTATGGGTAGATAACATCCTACAACTAATAGGCGTTCTGATGAGCTTGCTAAAAGGTTTATATTTCAAAGCttttttattttttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacactccagaagagggggtcagatcttgttacagatggttgtgagccaccatgtggttgctgggatttgaactctggaccttcagaagagcagtcgggtgctcttacccactgagccatctcaccagcccTATTTCAAAGCTTTTGAATTAATTTTGGAACTTCAGGGAAGGGATTGTGGA-CTGTCCTAAAGGGTTGTTTGGTATTTATCCTGTAGACCAGAGGACCTTCCTGAAGGGTCTCTTTTATCCTAGGCTATagggtgaccttgaacttttaattctattgcttttgtctaacttcagggagtacagccattcattcaccacaacttctggatttatgcagtgctgctgatggaaTGGGGAGTGGGGACTTCATGGTCAGTTGAACTAGCCCAACTCTGGAAGAGTTTTTATATCAAGAGGAAAAATAATCATGTCT-TGATCCAGAAAATATGGCTTAGCGCATTTGGAGGAATGAGGAGAGGCATGACTGCAGGTGGGAAGACCGGTTAGGAGAACTTTTGCCA-ATTCTAGGGAAGAAAAT---GTGTGGACTGGGC---AGTAAA-GACCTGTAGTAGCTGTTACACAGGGCA-CATTTGATAGTAGGGTGGGTGTTA-GCTTTTTGAGAAATGGCTGATTTTGGGCTTTCCCCTAGGTCCATTTCCTACTTAGGTTTTGGACAGATGAATTATT----TCATAATTTATTTtttcctcatttgtaaaatagggacagaagtagtacactatagggttgagaatatgaagtgaaagaaaatataaagtgactggtacatggtagttgctaacaaaataaatgGCAGGCAGTTTATTACCAGTAACTGAGTGTAAGTGGCCATAGAAATGGAGATG-----------------------GAGGAGAGCACCATTGCTAGATGATTTCCAGGTTTCTTGTTTGGTGGGTTGTACCTCTGTTTAAATGAGGAATCTCAGGCACATAGTCAGGTAT
s HiC_scaffold_1 113580226 3293 - 233722169 TAGGACTCTTAGGACATAACATAGCTTAGATAGGTGACTCCTCAATGAGACACA-CATCGGAATGTACATATATAAGCTCTT----TCCCCAACTTCCTGACTCACGTTTGGGGTGTGGTCCTGGCATCTCTGCTTTGAAAAA-GCTCCTCCGTTGATAACACTGATCTGTAGCTACAGC----CATCACCT-AAGAAGCTAAAAATAGCTGT-AAAGGAGTTTCTCCTCTTCGCTAAATCTTTTCAGCCTATTTCTGGTAGGCCTTAGA-----------------TGAAAGAAAAACGCCCTGCTTTAACGCGCCTCAAAGCCACCGCGCCTCCGGGGAACGC--------------------------AGGGAGTCC-CCTCTCCGCAGGCATCAGGAGGCCCCGGCGACCGACAGCGAGGCAGGTGAGGCCCCAGCGGAGCAGCGTCCCGTGCAGAGGACAGCGCCTCTCTGAAGACG-TCTCCCGGCACC--ACCCGGGCGAGCGTCCCAT--------------CCTTTCTCCTCCTTGCCCCACCGCTGCATCTGGACTCGAAACCATTGCCCGCCAAAGACTATCCAGCGTCCACGGCTTGTGACTTTTAACAGTGCCTTCGGAATTAACGAACTGCTACCC--TGACGCCAGACAACTCCACCAGACGCAGTCACAG-GCCATTCGGACCGCCCGGCCCCGCGTCCCAAATTCCCGCCTCCC-CCAGAGGACGTCTTGCGTGCttgcgtgcgtgcgtgcgcgcGCCGTAACCTCCCTCCTTCACCCGCGCGACGCGAGGGCGGGGGCGCCGCGTGCGCGCGCGCTCTCGTGGGTTCGCTTGCTTGCTCGCTC----------------TCGGCGGCCGCTCTCGCTGCGGCTGCGGCTGAGGCTGGGGGCGGCGGCGGCGACGCGGGCGGCTGGCGGCGCGGGGCGGTCCGGCGGGTTCAAAGAGGAAAACATGGCGGAAAACAAAGGCGGCGGCGAGGCTGAGAGCGGCGGCGGGGGCAGCGGCAGCGCGCCGGTAACTGCCGGGGCCGCGGGGCCCGCGGCGCAGGAGGCGGAGCCGCCTCTCGCGGCGGtgctggtggaggaggaggaggaggaggaaggcagcaGGGCCGGCGCGGAGGGCGGCGCGGCCGGGCCCGACGACGGGGGGGTGGCCGCGGCCTCCTCAGGCTCGGCGCCGGCTGCCTCAGCTCCTGCGGCTTCAGTGGGGCCCGGAGTTCCCGGTGGGGCCGTCTCGAC------------------------------TCCGGCCCCAGCCCCAGCGTCGGCTCCCGCTCC------------GGGTCCCTCGTCGGGGCCGCCCCTGGGGCCGCCAGCCTCGCTCCTGGACACCTGCGCTGTGTGTCAGCAGAGCTTGCAGAGCCGGCGCGAGGCGGAGCCCAAACTGCTGCCCTGCCTTCACTCCTTCTGCCTGCGCTGCCTGCCGGAGCCCGAGCGCCAGCTCAGCTTGCCCATCCCGGGGAGCAGCAACGGCGACGTCCATCAAGGTGAGCCGCGGGCC-TACCCGAG---GTCTGGGCCGCGGTGG-GGCTTGCCAAACCCAGGAAGATCCGGAGACGAAGGTGCTATGATCTGGGGCTGCTTGCACCGGCGCGGTCCCCAGGGGTGTGTATGCGAGGCGCAAGACACGGCCCCTGGGGGCAGTT-TGGGAGAAACTGGACAGGGGGTGAGAC-GGCAGGGTGGAGGGAGGGGTGCTGGCTGCGA-GGACTGGGGGAGGGGACGCAGGCTTTGAGGGAGCTTGTGGGTGCGGGTACGTCCTAGCGCTGGTTTTGGAGCAGGGCATTCGGACTAGGGGAGGAGTAGTTGAGGTCTGAGACATCGATTCTGAGGAGTATGGTGTGGAGGACCCAGACCAGGAAAGGGCTGTTGTTGAGAGAG-TAAGAGATACGGGCTCTGGAGGCAGGGAAATTGGCCTGCTCTCGACTGTGCGAGAGA-CTACGGATTAAATGGAGGTAAATGAAAGATATTGGAgaatttggaaccaaaagaagACGCTTGTTACAGAATAATTTCAGGATGACGTTTGGGCAGGAGGAATTCGG-AAGTGATAATAGCTTTGAAGGGCCTAACTGCTT-GGGGAAAATTGTAAGATTTGAGAATGAAGGAGGAATGAACTTTGAAGGGGAATGGAAGTTAGGGAGACCTGGGTGCGTATTTGTTAGGTTTGTTGGACGTTAATGTGGCCATAGTGTTCGGGGCAATACAGTACTGTACTCAATAA---------TGAGGCTCTCATTGGCGGTCTAATAGATACCTG----ACGTATAGTAGTTGAGGTGGGTACTCAGTGCCATGATTGTGGTACAATGGAGGGAAGGTCAAGAAAACTTCACAGTAAGGGAAATCCTGGAGCAGTTTGTTGAAGGATGAGTACTTTACTGATTTGGAGGGCATTCAGGTTACAGGGTATGTTCTACATCTCTGCAACTAGAGGA---CATGTAAATGATTGATGGAAATTATGTTGGATTGGTGGGCTGAATAAATAAGGGATCACAGTCTTC---TCTCTGAAACCTTTGGGTCTAGTTGTATTTTGGATTTTAGAATGTACAGTGTCTTGaacttttgtttttcctgataATGTCCCTTATGTAGTACTGTAGTTGGGT-----------------------------------------------------------------------------------------------TTG------GGTTTACATCTCA----------------------------------------TCAAACATACTAGTTCTGCCCTGAAACAC------------------------------ATGAATGT----CACAATGGGATAACAGA----TGAATAATAG-CCTCCTGCAGCTCAGGTAGGTTTTGTTGCAGACTTaacta-----------aaatttcaaagcatccG-----ATTTTGAAACTGTAGGGACAGGATTGTGGATCTGTACTAAAGGATTG--------------------------------------GGGTTTCATTTG--------TAGAGTGTAACCCT------------------------------------------------------------------------------------------------------------------------------------TCTGGAAGGGCTTTTGTATAAGGAGGCTAAAGGATCAGATTTGTGATCCAGAAAG-ATCATTTGAAGCACTT-GAGGAATGAAGGAAGCC-----------CAGGGAAATCAGTCAGGAGAATGTTGAATGTAATCAGGGGGAGAAATTATCATTTGAAATGGGTCTAGGTAAAGGATTCATAACAAGTGTTACAGAAGGAAGTATTT--CAGTATGGGGAATGACAGGAGCTTTGAAAAACATTCCATTT--GGTTTGTCTCTA---CTACTTCCCACTTACAACTTGGACAAATTAATTCTTAGCGTCA---------ACTTGCATATTTGTGAAGTATGGACAAAAGTACTTCGTAGAGTTATTGGGAGAATGAAGTGACAGAAAATGTGTAGTGACTAGTA-ATGTCAGTTACTAATGAAAT--------GGCAGTTTATTAGTAGTATCTGAGGGTAAGTTGCTGTAGGAACAGAGGTGGAGAGTGATACTGAAGTTGCTGTGAGGGAGACACATATGTTGAGTATATTCCAGGTTTCTTGCTGGGTGAAAGTTA-----ATGCACATAAAGAAT-TCTGGCACaagactagggat

a score=56847
s chr3           103309685 2507 + 160039680 cctctgcctcccaagtgctgggattaaaggcgtgcgccaccacgcccagcC---CCTAACACCtttttttttttttttt-----------taaatCTCC-----------------------TTTGGGTACCTGAATACATACACACACCTGCCTCATTCTTACA-------------GGTTCACTCTGAATAATTCAGA----AATCATTCTATATT--AAGCACCTTGATGAGATCTTCCTCCTCCCCCACCCtttttgagacagggccttaatta--tgtaaccccagttgtcctggaactatgcagatt--aggctggccttgaactcagagattcgcctacctctgtctcccaagtactaggatta-aaggcatgtgtcaccactgcccagctGCAGTTTCTTTTATC-----CATTTATAGGCTTTGAAAGATTAGCATTTCTTTTAGGACTGTCAGCTAATTCT--------GTATTTTAATAAA-----AATTTCTAGTGGGAGCATTTTAATACATGTTTTCCTTTCCCAGATGGGTATCATTTTTCTCCAGGGAAATAACTCAAACTGCTTTGTTCATGTCTTTGGTCTTTTTTTGTAGTACACAAGTGGTTTCCAAATGGGCTTTATGCAGA--------CTTTCCTGCTTTTCCTTTTGAAGAACATTAACCCCTGCTTCCTCTTCTTTTTTTTAAAGTTGGTGTAATACGGTGTCCAGTATGTCGTCAAGAATGTAGACAGATAGATCTTGTGGATAATTATTTTGTGAAAGACACATCTGAAGCTCCTAGCAGCTCTGATGAGAAATCAGAACAGGTATGCACCTCAGGTTCTCTCTATACTCATATATATTTTTCTTGTGGTTAAATGTAAATTATAAGAAACAATA-----TTTAAGTAATTTAGGTACTTCTGCTATAGCTCTATCTTTCAAATTAGAAATAAAGATTACTCTTCCACACCCTAAGACTTGGTAGAATAAAAT---AGTTATTATTTAAAAAGTTAAGTTTTATATAGATT-TATGTTCTGAATATTAGATTTTTACCTATCTAAATGTT--ATTGCTAAAGAAATGTTTT---TGAAGATTAAATGAATAACAGTGATTTTATGCTTTTGTATAATTAAT-------GGTTTTTAAGAGCAAGTTACAAAGTTTT--CAGTT-ATTTTGTTAATCTACATTTGGCAAATGTAATATAGATTAGTGTTTATTTCTT-TTTTAGGTATGTACTAGTTGTGAAGATAATGCAAGTGCAGTTGGTTTTTGTGTAGAATGTGGAGAGTGGCTGTGTAAGACATGCATTGAAGCACATCAAAGAGTAAAATTCACTAAAGACCACCTGATCAGGAAAAAAGAAGATGTCTCAGGTACGATACATATAGTTGCTGTCTTGCTGTTTTCTTAAAAAAAAAAAAAAAAACTtgtgcatatgtgtatgtgtacacatatgtacacacctgtgtatgtgtatGCCAtatgtatgcatatgtacactcctgtgtgccgcagtgcctatttgtggatgtcagaggacaactcaacaggaactggctctctctgcatttgagtcccagggattgaaccaggcttggcagcctgtgcctttatcactgagatgtcttgtttgtcccTGTACACATAGTTTCAATGACACATCTAACCGTTTGAACTTAGAAATAGCATGTTTACTTATTTATGATCTTTGAATACTAGCACTTAAAAAAATAGAAAAAATTAGTCAAAAATCTTATT-------GTTTAAAAA------TGTTTTATTTTGTTACAGAGTCTGTTGGAACATCTGGTCAGCGCCCAGTGTTTTGTCCTGTACATAAACAAGAGCAGTTGAAACTATTCTGTGAAACGTGTGATAGATTGACGTGTAGAGACTGTCAACTTTTGGAGCACAAAGAACATAGGTATAGAAGTCATAATTCTTTACTGAAAAGTATTAGAAATAGTACTGATAAATTTATTCTTAAATATTCTCATATTTTGTCTTGTGTATTTAAACCCAGATTTTATTTCTTGAAGCAATATATGTTTGATAAGA--CAGTATTTTTCATGTTCATATCTAATT-------------------ACATATGTTATTAGTGTGGATTTGTGTTAGTAAGATGGTA----GTTATTTCCTTGTTCACTAGTTTTATGGTTGAAATAAGGTTTTTCCAAATGCAATATATTTAGGCTAGTGGCTATGTATGATATGAAAAGGTAGTACTTGTATGGAGGTGACTGTTAAACGTTCTCATGCATAC--------CATGTTTTAATAGCTAAGCATAAATACACTGGTTTCACATTTGATGTATAA-TTGCAGGAAAGCCA------TATAAA----TAAGC-ACTAGTTAGTATAGTTACTGTTAATGCATAATTTTTTATTAACCATA----------------------TTTTACCT---GAATCAGCAGTATTTATTCATATCTTTGCTTCATCAGAATTGTATTAGATTTGTAATAGATTTTTTAATTAGGCACACAACAGAATTTTTA------CAAGCTTTCTCACTTTCCATGGCATCTGTTTATTACAAAT-AATAGGTGTAATAGTTTTATCTACAAAAGCTAGAACTATCCAGAGT-TTTTTTAAGAGTAGGTTGTCTAAATGGATGAAAGTA
s HiC_scaffold_1 113629556 2269 - 233722169 cctcagtctccca-gtgctgagattacaggtatgctccAACATGCCCAGCTTTgcctacctctttttttttttttttttgtactggggattgaactttcAACCTTAtgttgccaagcaggcacttaggctgctgagc---taaactc-ccagccccttgCCTACCTAAATGTATTTATGACCTGCTGGACATATTTCAGGTGGGAAACACTTTTCACTCAAAGAACCTTAATT-TAGCTTCC-------------------AGGCATGGcggtgaatgcctgtaattctagtactcagaggatg--gcaagttccaggctagcctgggctacaggga-------gaccctgtttgCCCCGGACCCACATCACAAAGCCTTAATCATCTTTGCAAAG-TCCATTTTGCTGTGTAAAGAACACTTAAAGGTTTTGAAGA--TAAGGTTGCTTTTGAGGGCATTA-TTAATTATCCTCCCACATACTACAGTAAAGAAGCAATGTTTAG--GGAGCTATCACACCCACCTTTGAATTACTCAG-------TCATTTT--------------ACTCAGCTCTTGATGCTCAT-TTTTTGGTCATGCCTGG----ACATAAATGGTTTCCAAATGGGCATCATGCACAAACACCACCTCGCCTGACTGTTATTT-----AATGTTG-------------CCATTTTGTGTTGTAGTTGGTGTAATACGCTGCCCAGTATGCCGCCAAGAATGCAGACAGATAGACCTTGTGGATAATTATTTTGTGAAAGACACATCTGAAGCCCCTAGCAGTTCTGATGAAAAATCAGAACAGGTATGCCtctcaatttttctttatattcctgT--------CTTGATatcaaatgttaattttaagaaaatatacatgTTTCGGGTAGTTACGTGATTTAGGCTTTAGTTTTATCTTTCAAATTGAAAATAAGCTTT---CTTCTACACCATCAAAGTTGGTTAAATGAAACTAGAACTattacttaaaaagtaaaatcttgCGAGGACTGTGTGTTCTGAGC-CTAGATTTTTACCTATATAAAAGTTGAATGTATAAGGAAAGAATTTAGTTGGAGAT-AAATGACTAACAAAAATTTTA--CTATTG-ATAGTGAATCTGTTAGTATATTTGACAGCAAGTTAGAATGTTTCaccattttattttgaggatcTCTATTTGGTAAATTTAATGTAGATtagcatttatttcttcttttaggtATGTACTAGTTGTGAAGACAATGCTAGTGCAGTTGGCTTTTGTGTAGAATGTGGAGAGTGGCTATGTAAGACATGTATCGAAGCACATCAAAGAGTAAAATTCACTAAAGATCACTTGATCAGGAAGAAAGAAGATGTCTCAGGTAAGATACATGTAGTT-----------------TTAA--------------------------------------------------------------------------------------------------------TGATTAT-----------------------------AATTACCTTTTTC----TTTTGGTCCCA------------------------------------------------------------------------------------TAA-CGTTT------------------TCTACTTATTTATAA------------AGCatcaattaaaatttagaaaactaaTAAAACGTTTTATTATATGTAGTtgaaaaaagtatttgttttattttgctacagAGTCTGTTGGAGCATCTGGTCAGCGCCCTGTTTTCTGccctgtacacaaacaagaaCAATTGAAACTTTTCTGTGAAACATGTGATAGACTAACATGTAGAGACTGTCAGCTATTGGAACACAAAGAACATAGGTACAGAAGTCATAATTGCTTACTGAGAAGCATTATAAAAATTgcttataaattt-tgtttcagtatttaaattttatgt-------------------attttatttcttgaggCATTATGTGTTTTGACAGATTTAATGGTTTTCCTATTCATCGCTAATTGtcttataaatatttgttgaaatgtATCATTA-TGTTGATTTGCTTTTTATGGATAGAATtacattatttctttgtta-------ttttggttCAGATAAGCTTTTAC------TAACATATTTAGGCT-GTAGAT---TGTAATCTGTAAAGGCAATATGGGTATG---------GCTAA--TTTCTCAGGGATGTGGGTGATAGGCATTTTAACATCGAAATATGGATATATTGGTATCAagttaaatgtataattttcagGAAAACTATGAATTTATAAACAGCTAAGTGACTCCatagtata--taattttaaagcataatTACTCCTTGAACATGTAACTTTAtcttttaactgtatttttacCTTGAGAATCAGTAGTATTTACTTGTGGGGCTATTTCACCAGA--------------GTACTGAAGTTTTTAGTCAGGTATATAACAAAAGTCTTAACTGATTAAATTTCTCTAGCTTCCAGAGCATCTGTTtattataagtaaataaacatgGT-------CTGACATAGTATAAAGTTTTCTAATGTGTTTCCTAAGAGAAATTTTTCTGGATGGTTAGAAATA

a score=26125
s chr3           103320249 1897 + 160039680 CCTCACACATCACTAAAAC--ATGATGCCTCCCAA--ATGTCAATTATTTTAGCATCTTTGACTATACTAACTAGTAAAAGTGCCCCGATCTCCTGCCTA--TGCTTCCATCTTAAAGAGTTTTAATTG----TTTTTTTTATACTGTTTCATTTAGGTTTGATATTTTTAGTCTTCTATTTCTGTTGTATGATCTTCCTTGAGT-----TCTGAATTTTCGCATTCTGCTTAGAATTACTCAAAGGCTTCATGTTACTTCAAGAACAAAACAAAGAAATGGCATGCTATACCTGGCCCTTAATGTTTAGTTTGTTTTAAATTAGATTTTGTCCATATTTTGACAT-------TTGAATATT---CTTTGATCCTGTTGAAATTTCGGTAAGTAATGCACTAAACAG---TCAACT--------GTTAGGATT-----TCTCTGTGAAGCTTTCCTAGGTCTGAAAGCAATTTTTTTAGACATTACATGTTTGGTACAGATTATATCTCATCACAGTGTGGTAT--------ATTTGTGCAGAACTATTACTATAATTTGAGCCATGGGGTCTTTTTACTTACATAGAAAGTACACTGAACAACAACAAAGAGACAAGTATGCAGAAGAAACTAGGAATTTGTTGATTTAATGAATAATTTATAAAA-------TGAAGT---------CTATTATTCTAGTATCT-GGTAGCCAAGGG-CTGTGGACGTTAGTATTAAATCTAAATCTAAATTTCTAGTGTTATAATTAGAAAGTTTGAGCACATATCAACTA--TTGACATTGGTAGAGTAAAGCTA----CATTGGTATCTTTATTTGATAGAATTCCTTTGGAAAGCCTCATGAAACATAGCA--------------------------------------GGT-AATA-AAACCAGATGCAACAT-GCATGTGCATTGTGACTATAGATCTATTTTAAAATGCTTAACTAGGTTTGTGGGAGTCCATAAGTTTTAGAGT--ATTTGCTTAGAACATGAACTTGATTTACAGAACTCAG--TCATTGAGTTTATA-----------TACATTAGACTCGTAGCAGTGTTTGGGACTTTAGTAATTTTGTAATT---------------------TTGATGGCATTTTATTTAGTAT-GTTGTATTTTGTGACTTAAATTGTATGTATCTTATACA---GGCTTAAAAAAAAATAGAATCCTCAGTTAAAACTTCTGATGTAAGTTTACACTTACAGTTTTCTGAGGAAATTTTTCTCTCATAATGGCTGTTTCAGGCAGATGGCATTAAATGGCTGTTGTAGTACTAGACAGGTGACCAGCAGAT----------TATTTCAAGGTTGTC------------------------------------------------------TCATGTAACTCAC------TTCCTAAGTCTTAATTATAAAGTTTCGGTTTCACATATAGTTTTTTGTTTGTTTGTTTTAAGGTATCAGTTTTTAGAAGAGGCTTTTCAAAATCAGAAAGGTGCAATTGAAAATCTGTTGGCTAAGCTTCTTGAAAAGAAGAATTATGTTCATTTTGCAGCTACACAAGTGCAGAATAGGTAAGCCTGTTGCATAAAAAATATAATTTTGT-TTTAAAGTTTGTTAAGAAAGAATGCATCCAAATTAAACTTATTTTCTTACTACATTAGACATATGTAGAAGACACAATTTTTAATAGATGAAATGATACAATTTGAAGTTGGTGTATTTATTAACTAAACAAGTTTACA-----AAAATATTTTAAAATTTTAGGATATGTCTTTGA-----------------------------TCTTCTGCCtttttttttttttttttttttttttggagacagagttcttctgtgtagcctcttgactgtcttagaagtcattttgtaaactaagctggtctcaaactcaagagatgtacctacctctggagtgctgggattaaagtcattcaccaccatggctgggcATCTTTGACCTTTTATAATTAATAAGACTTCAATGTATATATTCTTTGAACTT-GGAAAATGAGTTAATATGGAGGGGACTGAATTACAAAATTAAAAGCAGAGATTGTATAGAA
s HiC_scaffold_1 113647302 1918 - 233722169 CCTCCCAGATCACCAAAGCTTCTGATCTCTCTTGATGAATTCAGTTGTCC-ATCATGTTTGGTTATACGAACCAGTA---------TTGTGTTTTATCTGAGTGCTT---------AAAGTTCTAACTGGTCTTTCCTTTTCTGCCCTCATCCTtaggtct------------tttacatttctgTCTGGTGA-CTTTCATGAATGTAAATCTGC-TTTTCACATTCTGTTAAGAATTCCTCAGGTACATTCCATTATATAGAGAATAAAATGCAGAAGTAGCATGGTATCCCAAGCCCTTCAG----AGTGCCTCTAGATTTAAAATGT-----TACTGTGACATCTTATCTTTGCACATTTCTCTTTGGCCATATTGAAGTCTTTGTAG----TATAATAAACATGTCTCAACTTAGCAGAAGATACCATTCTGACTATCCACAAAGTTCCCTTGGTATTGATACCAGTTT----AGGCACTA-ATACTACCTCCATTATACCTTTTGTCTCAGTTTGATATCAATTCATGCTTTTGCCTTTATATTACTGGACTGTGTGCC---------TTTTGCTCATGTGGAAAGTA---------------------------TGTAAAAGAAACTA---ATCTGTTGGTTTCATGAATAATGTGCAAAAAAGtaagtgaaacaaaaaaaaattattattctaGCTTCTTGATAACCAAAGAACTCTAGACTTCACTGTTG--tctaaatata-----------ttagaa----aaaatttGA--ATGTATCACTTAGGTTGATAGACTTATAGTAAAACTGGTGTTGATGGTATCCTTAATTCCTATAACACTTTTGGAAAGTTTTGTTATATATGGCATCTGAGTGTGAAAATTTTCATGTATGATTTAAAGACACGGTGAATACAAATCATATATGATATTGCATGTATATTGTTATTATGCTTGTATTTACAAATGTATAATTAGCGCAG-GGATGTAAGTAGATGGTAGTGTTTGTTAGCTTGTGTGAGGCATTGGGTTTA--ATCCTTAGCATCGCCAAATTAATACACACTTATATTACATGAAAATCATAGCAGTG------ATTTTTGTAATATTAAAACTAcgagtgatttttttcctcctttgataCTGTTTTGTATAgtattgttgtattttattatttgaaatgtatttaacttcagtatttggatttttaaaaaatgcaatcttGAATCACAACTTCTTG-----------GCTTTCAGGATT--GGGGAAA----------ATAATTGCCAGCTAAA--AGTTACTGTTAA------GGTGTAGTAATATGGAGGTAGCCAGTATATAGATATTTAATGTTTCAGTATTGACGAATACTgttacattatgtactacaaacatgtactcataatttaaaaaatggaatcatataacTCTCCTTGGTTTTCCAAATGTTAAttgtaaatgt---gttttaaatgtagtttttgtttta---attttaaggtaCCAGTTTTTGGAAGAAGCTTTTCAAAATCAGAAAGGTGCAATTGAGAATTTGTTGGCTAAGCTTCTTGAAAAGAAGAATTATGTTCATTTTGCAGCTACTCAGGTGCAGAATAGGTAAGTGTGTTGCTTTAAAACCATAATTTCACATTAAAAGGATATTAAG-AGGTGTG-ATTCCATTTGAAATTGTCTTC-TGCTAT-CTAAGCATATATAGAAaacatggt-----ggacaggaagccagGGAGGGGGGAGTTCAGGGCTATGTTAATTAAGCAAAATTTAATTGGTCAAACTTTACATACCTTTTGAATATATCCTTGAGTGTGTTTTGGGGGGcttttttggttggtttgtttgtgtgttttttgtttctgtttttttgtgaGACACAGGGTCTAATAGTTGA-------GACTGGGTTTGG----ACtatgtaa-------tgatc-----ctc-----ctgcctcagcctcctgagtactgggactg-----------------------------------TTTT----------AGACT--AATTCATATAAGCCTTAAACTTAGGGGGGAAAATTAGTATGAAGAGAgttgaattataaaatttaaagtagagATTGTGTGGAA

a score=32837
s chr3           103323597 1800 + 160039680 AGAATTAAATAAAATTTGCAAATAAGTCTAAACAAGCCATGATATACAGGCAAAGGAGGAAAAATTATTATATTGCTG-----AGTGTATTAAGATTGTCTA----TGTATTTGGGTAATGAAAGGCAGTTTGTACAAAATTAGAAAAGATGAAGACTACATATTATGGATAGTT-TTGACATTTTAC---------TTAATTAGATTGCCTGCTTCTCATTTTATAAATATGAAAGTAATCCAGTACTTTATAGTTATAACTGAAACTATAAAACATATAATTGTAATAGGTGGAGATATTTATTTCTAAAACATTTAGCAACTGTT---AAAAATGAATTGAGAGTTTCAGAATCT---TTGGGAATAGAACACATTCTTATCAAGAAAAGAAGCCCTGGGTCACTGCT-AGCAGGC-ATTCCCTCAACCCCCAGTTATTTAAAATGTGTTTTTACTATCAGCAATGTAAAGCCAGTTTGAGAGGAAATTATGAAACAAACTTAATTAGAACCCACATTTGAAGAGATAACATTTGAAGTAAAATAGATGCGTTTTAA----ATTCTTGTTCTTTCAAAGGTTACCTATTGATTCCGATATTATTCTTTTGTTGGCAGAA-GTATTTTTAAATGGAATTTAAAAAGGATTAAACAGACTAAATGggggttggggatttagctcagtggtagacctcttgcctagcaagcgcaaggccctgggttcggtcctcagctctggaaaaaaaaaagataaacagactaaatGTAGTAAGTTTAACACTGAAGTCAGTAGTGCTAGATATTTGTACATCATATTCAT-GCTATAGGAGTTTGAAATTGTTCTACAGATGAATAAACTGGGCTTCATGAGCttaatttaaa-ttattaaatattGAAT-TCAGTCTTTATGA----CTTCTTTAGATCTGATAAAGTAGTTAGGTCTATTAAAACCTAAGTCATGCACTTTGACAAA-TTTTAACT-AGGCACTTTATACAAAT---TACTTTG-TGAATTTCTGTAA--CTGTTGATTCATAGACATAGGTTGAGTTGATGACCTAATGGTACATTTCTCTTATTCAGGATTAAAGAAGTAAATGAGACTAACAAACGTGTAGAACAGGAAATTAAAGTGGCCATCTTCACCCTTATCAATGAAATTAATAAGAAAGGAAAATCTCTCTTGCAACAGCTAGAGGTATGGTTTAAAGCAAAGAT----TAAAAAATGCTTCTCCTGCTCTTCAGCTGTTCTCAGTGGTTACTGAAAGTGCTCTTAAATGGTTTGCAAAAGGCAAATAGAAAATGTCTTTT------TTGTTTGTTTGTT-AATTTTCTATTCAGAATGAGAA-----TTTTATTtagttactttgtagttcattttaatagcactggttggcttggaaatcatcatactagtcttgaacctatagaacctgtctcccaagtgctggaattaaaggtgtgtaccaccatgtctgacATAAAACACTGGTTTTTTGTTTGTTTGTTTGTTTTAAAGCCATATAACTTGGTAATAGTGATAACCATTTTAGG------AAAGAGTTATTACTAAAACATGATGTAAATGAAGACAAAGCAAGCACTTTGAATTTATTTCCTTCCTAGCAAGAGGCCTGTTTAACTTCCTTATATAAATGCATCTGAGCTTATGATTGAA-CCATTTATG--------------------TATTTCTGTAATTG-GCCAGAAATGTTCCACATTTTGAATTATATAAACCCTAA--------ATAATTCTATATTATTTA-TTATGTTTCATATTTTGAAATTGGTATGTGAATAGTTTCTGAGGATCTTGTGTAGTTTTGAAATCTAAAAGAAGGCTTTAGGCTTTTT
s HiC_scaffold_1 113651772 1518 - 233722169 aaaataaaataaaat-----aatga-tccAAACAG----TGATACACA----AAGGAGGAAAATCTGTATTACTGTTGCTTGGAGTAAATTAAAATTGCCCAAATCtgaattttgcaaatgaaaagcagtttatacaaaa--------aataaaggtTAACTTTTATGATTGATTGTTggcattttatgtatttctgttaGTAGGATTCCCTATGTCCCCTTTTATAAGAGTCAAGGTG-TCAGCCACTTCATATGTGCAACCAAAACTTTCAC-----TAACCACAATGGATGCttatatttatatctaaaatatataacagctattttaaaaactgggtagagactt--gggatgtagctcagtggtagagcatgtgcttaACAC-ATGAGAACCGTGGGCTTACGCCTCAGTAAACTACACCTTC--CCCCTAATGTCTTAACAC---CGTTTAGCATATACAGTAGGAA-TCATTTTGAGAAG---TTATGGAAGTAT----ATCACAAACCATATTTCAAGTGGT------TAAGTGAAAATGAATGCTTCTAAATTTAGTTTCTGCCTTCTGAAAAGGTAATTATTGGTTGGGACATT--------GTTGGTGGAAAGCATT------------------AAGATTAAACAGA--------------------------ACTGGTATACC---------------------------------------------------------------AGAAT--------TGATTCTAAC-CAGCAATCATTGATGTTAGATGTTTGTAAGTTACATTCATTGTTATAATGACTTGAGATTGTTCACCAACCTAAGCGACTGGCCTTTATGAGCTTAATTTAAAACTACTAAATATTCGTTGTTTGTCTCTATAAATAACTTACTGGGACCAAATTAAGTGGTTTGGTCTGCCAACACACAAGTTGTACACTTTGACAAAGTTTTAACTTAAATACTTGGT-TAAATGCCCACTTGGATGAATTTCTATAAAATTGATGACTCAGAGACAAAGGATAAGTTGataacctaatgatgcatttCTCTTATTCAGGATAAAAGAAGTAAATGAGACTAACAAACGAGTAGAACAGGAAATTAAAGTGGCCATTTTCACCCTTATCAATGAAattaataagaaaggaaaatctcTCTTACAGCAGCTAGAGGTATGGttcaaagccaaaataaaacaaaaactgcttcTCTTGCTCTTCagctgtt-ttaatgtttattgaaAGCTCTTTTAAATGGGTTGGGGAATATGgaagtaaagtaaaatttaaaaaatagattgttttttccatttcctatTGGAAAAGAGACCTTTTTTCTAGTTAGTTACTTTGAACTGTATTC--------------------------------------------------------------------------------------------------------------------------------------------------ATTAGGAAATAATGATGAC--ttttaggaataaaaaaaaattattactaaaATGTGGTGCAA------ACAAAGGAGGCCCACCACATTTCTTACCATGATA--AAG-------------------ATATAAA-------GGGCTTCTGCTTTAAGCCATTTGTGTCttcaccttattttaaaaatagtttcataaTTATGCAAAAAATGCTgctcattttgaaatttataaatgttaaaCTTATTGATGATTTTATGTTAGATATTTGTGTTGCATATTTTGGGATTAATA------------------------CATAGTTGTAAATTTTTAGGTAAGGATTTAGCCTGTTT

a score=28815
s chr3           103325918 1080 + 160039680 AAGTCTTGAACATTTTCTTAGTTGCT--TTCTCTCTGATTGTTTATAGACTCATTAAATAATTACAGGTTTCTCTTACATAATTTTTGCAGTAGATAGTAGTAGTAGTAGTAGATAGTAAATTTTGTGAAAAAATTTTTTTTA-ATTCTTCAGTGAAGCTATTCC---ATTTCAGAATGTTACAAAAGAAAGACAGATGAAGTTACTACAGCAGCAGAATGATATCACAGGCCTCTCCCGGCAGGTGAAGCATGTTATGAACTTTACAAACTGGGCCATTGCAAGTGGCAGCAGCACGGCCCTACTTTATAGCAAGCGTCTGGTGAGACTTTTTTTTTTTATTACCTAATTTATTTTTTACCTAATGGACGAATTATTTACAAGTGTAGAATGTGTATTATTGTAAATACAAAAACCTGTTCAAAGGATAATTATTTATTTTGGCAAATGTAACCATTTTTATATATAGATTCAAGGAagctgatcatgatggtatataactataattctagcctgcatttggaattggattgactcaagagttcaaagttaacctgaatttcatatcaattctctgactcagaGCTGGAAAATTTTTTATCTTTCTGTTGTCCCCATTTACTTTTGATTAATTGTATTTCTGTCATTTTCCTGGACTCTA-----------------ATGCCATATGTAGTCTTTTGAGGATACTTAGTATCTTAGTGCAGTTTATTATCAAGTGTGGCAAAGATTGAAGTATGTGCTTCTCATGTGCTTGCTAATTTAGATGTTGACACTGTCTTCTGTGATATCT--------GGGGCTTTATGAACTT----AAAAAATGTCTCTAGTATGCTTCTTCAATTAACATTTAATTTTAATACTAATGTGAATTTTTT-----CCCTTGAAGATTACTTTTCAGTTACGTCATATTTTGAAAGCCCGATGTGATCCTGTTCCTGCTGCCAATGGAGCAATTCGTTTCCATTGTGATCCCACCTTCTGGGCCAAAAATGTAGTGAATTTAGGTGAGAAGTCATTTCATGGATATGATTTGGACTATAAAGTTAAAAGGAGAAACCATTTTAGCAGATTCTTGATACAGTTTTTAAACTGT
s HiC_scaffold_1 113654570  896 - 233722169 AAGTCTTAGTTGTTACTTTGATTAGTAATTTTTCCTGATTGGTCATAGGCTCGTTAAATAATTAT---------------------------------------------TAActagtatatattat-------tttttcatacagTATTGAGTGAAGCTCTTCTTCTATTTCAGAATGTTACAAAAGAAAGACAGATGAAGCTACTACAGCAGCAGAATGACATCACAGGGCTCTCCCGGCAGGTGAAACATGTTATGAACTTTACAAACTGGGCCATTGCAAGTGGCAGCAGCACCGCACTACTGTACAGCAAACGGCTGGTGAGACATGTACCTTT--------------ATGTTTCTCTAATCAAC----------------------------------------------------------------TTTATTAAGGTATAT-----------------------------------------TGACATTTGACAATTATTACTGCCcccttttaaaat---------acaagaaatttgTGTCAGCCTCAAAGT--------TTCCCTA------------------TTTCATTATACCCTTGACCCTAGACAACC---ATTAATCTAATCTC--TCATTTTCTAGAACTTTATGTGAAGGGAATCATGTAAGTAATGTGTGCTTTTTTGAAGGCGCCTAGGATCTTAATGCAGTTTACTATCGGAAATAACA---ATTTCAACA-ATGCATTTTATTTGATTGCTGATTTATACTTTGGTACTGTTTCTTCTGATACTTGACACTGAGGGagtattttagctttttaaaatactgtattttgtaTGCTTTCCCAATTGGTGTTTAGCTTTAAGactaatgtgaatttttttttcctcctttaagatTACCTTTCAATTGCGTCATATTTTGAAAGCTCGGTGTGATCCTGTCCCTGCTGCTAATGGAGCAATACGTTTCCATTGTGATCCCACATTCTGGGCAAAGAATGTAGTCAATTTAGGTGAGAAATTGTATTACAA--------TAGAACATTGacctgagaaaagaaaatatgtaaatcaaattttaa-atagttttaaaattgt

a score=54573
s chr3           103328876 1853 + 160039680 GGCTTCTAATTAGCATCATC---AAACCTAGCTCTCATTTGTGATGTACTGTTGGATGCTCTGAGGTGCTAAT---TGTCAGAAGGAGGAAAAGATAGTGATTCATCTTTGAAGTGGGCAATTTAGTTGATTATTTGTAAATCCTTCTTATTTTTTTAAACCCTCAGGTAATCTAGTAATAGAGAGTAAGCCAGCTCCTGGTTATACTCCTAATGTTGTAGTTGGGCAAGTTCCTCCAGGGACAAACCACATTAGTAAAACCCCTGGACAGATTAATTTAGCACAGCTTCGACTCCAGCACATGCAGCAACAAGTGTATGCACAGAAACATCAGCAGTTACAACAGATGAGACTGCAGCAACCACCAGCTCCTATACCAACAACAACAGCAACAACCCAGCAGCATCCTAGGCAAGCAGCCCCACAGATGTTACAACAACAGGTAAGCATTGTGC---TCTTCCATTAATGATAGAAATTGAGATGACCACAAATCTACACTTACTTCTTTGCACATGAATTACACAATATGAGTTACTAG-----GTGAAGTTCAAAGGTCAG-----------------------AAATTTGGGGGAAGTTTAAAGAATAAAGGTGT---TAAG------ATCATGGGAAGCAGTGACATTT--TGCCTCT----------TGATATGTTATATACCCCCCCCCCCCATTTGTGTGACCCAGA------------TTGTTTCTAAGCTTTGATGCG----TTAGGCATTGGCTGAAATTACTCTTTTCTTTGATGTTGTT----TATATGCTGCTTCACAATCAATATTGTTAGCTCCGCACGAGATGAGTTAATGTCGACCTCCATTTCCTTCCCGCACTCCCACCTAGAAAAGGTAGATAGGAAAAATTTGGAGT--TACTTTTTATAGTAATTATCAGTTCTGTAAGTATTGGGTTTGGAAAGAGAATATGACCTAATAGTGTACCCTTAATACTACTTAATATTTATACCCTTCTGTTCTAACTGAATTACTGTTACCTTAACATTTTATGATTTGAACAATAAATTTGTAGAAATATCagctgggcatggtggagtttgcctttaatcccagcacttgggaggcataggcaagtggatctctgaggttgagaatagcctggtcttcatagtgagttccaggacagccatggctacaaagagaaaccctgtctcaaaaagccaaaaGAAAAAAGAAAAAAAAAAAAAAGGAACTACTATATGAATTAAAATGTCTGCTTTTTTACAGCCTCCAAGATTGATCAGTGTGCAAACAATGCAAAGAGGCAACATGAACTGTGGAGCATTTCAAGCCCATCAAATGAGACTGGCTCAGAATGCTGCCAGAATACCAGGGATCCCCAGGCACAGTGCCCCTCAGTATTCCATGATGCAGCCACATCTCCAAAGACAAGTATGCCTAGAGTTACATTTGTAAGAATCATACAATTTTAAAACTAAAAG--ATCATTTTTTATAATTAGAGTTGTTGATGAG----GGTCTTTGATATTTATGATAGTTTGATATTCTACATATATCTGTTTG-CCCAAAAAAATGTACA-------TTCACATGAAAATTTG-------------------------TCTCTTTAAACTT-----ACAATATGGATTAAG-ATACTCTGTTTATCTAAGCTCATTGCCT----AGAGTGAAAAACAAGTCAAGGAACATTTGATTTACCTTTAGTCACAAATGATAATTCTGAAAATCAAAGTTAGAGT-----TTTCCTGATACAGTTAGTATGCTTTTTAACATGACATTTTGATCTTGATA-ACAAAGAATTCTTTAATAAGGTTATCTGTGTGTGTATGTCTGTGTTTTTATATATTTTCTTTTCTATACTCAGGTGTTA-TTTGTTT------TAGATATGCCTAATCTTATAAATTACTGTGGGT-TAGGGTGTAGGTCTGTTGTAAAAT
s HiC_scaffold_1 113657283 1706 - 233722169 GGTTTCTAATCCTCATCATCTTTAAATTTAGCTTCTACCCCTGCTGTACTATGGAAAACTTTGATGTGCTGATAGTTGTTGGAAG---------------ATTAATTTGTGGGATAA-CAGTGTAGTTGATTTTATGCaaatctttctcatttt---aaatctcCAGGTAATCTAGTAATAGAGAGTAAACCAGCTCCTGGTTATACTCCTAATGTTGTAGTTGGACAAGTTCCTCCAGGGACAAACCACATTAGTAAAACTCCTGGACAGATTAATTTAGCACAGCTTCGACTTCAGCATATGCAACAGCAAGTATATGCACAGAAACATCAGCAGTTGCAACAGATGAGAATGCAGCAACCACCAGCTCCtgcaccaccaccaacaacaacaacacagcaGCACCCTAGACAAACAGCCCCTCAGATGTTACAGCAACAGGTCAGTATTGTGTCAGTATTATATTATTGATTTAAGTTATGCAGATTTCAAGACTTCTCTTTCTCCCGTATAGATGAGTTACACATTCAGGTTTGCTAGCAGGAATAGAGTTCAAAGGTGAGTTCTTTTGCACAGATTGTCATAAGAATGTGATTAAAGTGTAAAAAGAAAAGGTATAAGTAAGTAACTTACCTTGGGAAACAAATTAATTCAGTACTTCTGTGAAATTACTGATGTGTTCT-CATCACTCCACAAGATCATTGTGGGCCAGAGAAACGGGTCATTTCTGCCTAAGatctgatctgttctttagacaTTTGTTCAGGTCATTCTCACCCATGTGGCTCTTCTGCTCTCTGCCCCTTC-TGGTCAAAACCATTACTCCAAGTTGAGGTAAATTAATGTTGACATGCAT------------------ACCAAGAGAGGAAAATGGG--AAATTCAGAGTGATACACAATCTAATAATTACCAGTCCTTTGAGGATTGGCTAGAGATGAAGACAATGACTTA------Taccttt-----tactttata--------------ttctgacTGGATTATTTTTACTGTAACA-TGTAT-ATTTGAGAGATAAGTTTGTAAAggt--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tattaatt------tttac-tttttgtagcCTCCAAGATTGATCAGTGTGCAAACAATGCAAAGAGGCAATATGAACTGTGGAGCTTTTCAAGCCCATCAAATGAGACTGGCACAGAATGCTGCCAGAATCCCAGGGATACCCCGGCACAGCGGGCCTCAGTATTCCATGATGCAGCCACATCTCCAAAGACAAGTATGCCTAGAGTTACATTTGTAAGAATCatacaattttaaaactaaaagacattgtttttcttattca-----gTTGATGGGGGCAGGTCATTGATATGTTTATAAATTTGATTACTGTTATGTATCCTCTTGTCCCaggaaaatacatatatacactgtACATTAAATTTTGTATTCAATTTTACGAATTTTTTGCATCCTTTTAAATCTGTCACATACCATGGGTTAAGAATCCTTGATGTAATCCAACTCATTCACTTATAGAAgtgagaaacaatataaaaaactttTGAAGTACCTATACTCATAAGAGATGAT----ACAATCAAGATTAGAACTTTAATTTCCTGAT--AGTCTGTGCTC-TTTTAATGTGAC--TTTGATCctaacataaaaagaattttgaaagtaGGAGAGCTtgctg----------------tatataatttttttttt---ctcaagtgtTACTCTGTTTAGAGTATAGATATGattagtttcaaaaataaatgtaggTCTGGAGTGTGACTCAGTGGTCGAAT

a score=29023
s chr3           103331028  998 + 160039680 tatttCCAAAAGACCTTAAATATGTATGACCTTAATC---CTTGTAATAGTTCTCTTAATGAAATCAGAATGGAATCATTTATCCATAATTCAGGGTTACTATGTAAGATTATGTCACTGTTTAGGACTGTATAATAGTAGAGCTAGAAATCAATGTCATAATTCCTTTCTG-AAACTCATGAATTT---CTACCATATCAAGTTACATT-------------TTGTAG---TTCTTTTTTAATTGGCTAAAAGACTAAAGAATCAGAGAGGAATATGTTCAGAACTGTGCTTTCTGTGTCCTGCTATTTGCAAACTTGGTGGCTTTCACATCTTCATACATCCTTATTCTGAA----GATCATATCAGTAGGCTGACAGATTAACAATTATTTGCAAATCTGTTTTTCTTTAGATAGTACATAAAAACGAGT-GAAAAATGAA-GACTC-GTTTAAACTGTTCTCTTGCATA----TGAGAGGCCCCCACTTTGTCAGTTGCAGGTACTTTTAGTTTGGAAAGTACACA---------CTAAAAATAGTTACAATTGTTGCTAAGGTATGGTT--CAGAGATACTGACAGAGCACATAATAAATAGTACCTTCTTTTTAAAACAGCATTCAAATCCAGGACATGCTGGACCGTTTCCTGTTGTATCAGCACACAA---CCCAATCAACCCAACAAGTCCCACCACAGCAACTATGGCAAATGCAAATCGAGGTCCCACCAGCCCGTCTGTTACAGCAATAGAATTAATACCCTCAGTCACCAATCCAGAAAACCTTCCATCGTTGCCAGATATCCCACCTATACAGGTCTGTATTTAAGCTAAGCAAGTCAGTTAAAATCTCATTTTAATTGAAG----AAGATGTGTGTTTCAGATTTTG------TTTAGTTTCAGGACCCATATTTCCTTGATCCTACTGAAGAGTAAAGGATACACATGTAAAATTT---AGAGTTACTGTGCCTGAAACAAT--------AATATTCATGTTA--------------------------AGAGTATCTAAAC--ACGTACAATAATAGACCAGTATTAGCTTTGTTGAT
s HiC_scaffold_1 113661699 1054 - 233722169 tatttcccaaaga---tacttatatatgacctTAATAATGCGCATTACAACTCTCACATTGAAACAGGTGAGAGACCACTCGTCAGCATTTGtaaattac---ataaatttgtgAT-TTGCCTGAGgtaacacaatattaaaagtgaGAATTGATGTTGTATTTGCTTTCtataaattcattgttttttccTACCATATCAAGCTACATTACATTCTTGtcctttttaacttttctgttttcattagaaaaacaacTAAAGGTTCA-AGAGGTATGTAGACAGAACAGTAGCTTTCTTATTCTGATTTTCGAAAACTTTAAGGCCTCTAGATCAATA---ACCTTGATTCTAAAATAAGGTTATATGACCAGAGTGATAGGTTGAAAATTATTGACAAGCCTGTTTTTCCATAGATACTATACAAAAGTGAATAGAAAAATGAATGGCTAAGTTTTAGTTATTCTGTTGTACACAGTTGAGAGAGccc-acttttt-------------tttccctctcacaGGCTCACATACAACCTTCGTAAAATAAT----ATTGTTGTACAGGTACAACTGTCAGGTACCCTGGCAGATCAACTAACAA-TAATGTATTCTTTCTTAA-CAGCACTCAAACCCAGGGCATGCTGGACCTTTTCCTGTTGTATCAGTACACAATACCACAATCAACCCAACAAGCCCTACTACAGCAACTATGGCAAATGCAAACCGAGGCCCCACCAGCCCATCTGTTACAGCAATAGAACTCATCCCTTCAGTTACTAACCCGGAAAACCTTCCATCCTTGCCAGATATTCCTCCCATACAGGTTTGTCTTTAAGTTAAATGAGTTATTTAAAGCCATGTGTTAATTACAAAGTTAGAGCATACATTtcagattttatgatttttaaaattcagg-ccAACATTTCTCTGAAATTTATGAAGAGTATA-GATAT-----TAGAATTTCAAAAGGTTCTTGGGCTAgaactaagatttttaaaattttaaagttataagAAATAGAGTGTTCAATATTATGAGACTGTCTAAATAGAGGTACAATGAtggtt---tgtcagttttgttgat

a score=23756
s chr3           103337045 959 + 160039680 GGATGATAAAATAGGAAGGGAGGGAGACTGAGGACAAAGG---TCTCCAACAATTTTGAGAAAAGGAATTAAAGTGTGCTGTTAGTGTATGAGAGCTGTTTTTGTAGTTGGACAGACAGGGCTTGGTGGATTACTAAATTTGTCTTAG--TAGCT--AGATGGGTTATATAATATAAATGATAAGATCAGTCACATAAACTTAGACTGTGTGAGTTCTCAGAATAACCTAAG--GAAGTTACAGTTAGGTTGAACTTGATACTGAATAATCTGTTAGTTTAT-AGTAAAGTG--------AGTACAGACAGTGACA---TTAATTCATTTGTCATCAGTTTAATCAAAGCAAATTTATTTTTATCTT-----TCTCTAGTTGGAAGATGCTGGCTCAAGTAGTTTAGATAATCTACTGAGTAGATATATCTCAGGCAGTCATCTACCCCCTCAGCCTACAAGTACCATGAATCCTTCCCCAGGACCCTCTGCGTTATCACCTGGATCTTCAGGTAAAA-CAAGCAGGGATATTGCTTCATTGCTTTTAACCCTTTAACACAGGGGTGGGGGAATGAGGGCTGTTTCCTCACATCTATAATCATGTA-----------AAAAACAAAAACAAACAACAGCAAGAGACGGTGTGTAGAGATACATGCCATTTTACACACAAAATGTAGTGGGGAGGAAGGACGAGGACAAGGAAttaagaagttggctctgatgactatgtgatattgggtattggcaag-tctaagtctgcagggcatttagcaagc-ggagactccggaaagcaagaggtactttacagtctagtgtccagaa---gtaaaattcacttagg-gacaaaaaggcataggcctagctt---------ttcaggggtttagctgactaaataaggcccacttggattctgaaggcgcgtttgctttgctca--cagtctattgacttT-TCAAAATTTGCA-TGCATATGTTTAAATGATTTGACAATCTTTATCTCA
s HiC_scaffold_1 113669943 942 - 233722169 GGACACTGAAGTA--AAGAAAAGGTATTTAGGGACCAAAGATACCTGCAGCAATTTTGA-----------------CTCTATCAGT--ATcagaattattttcataatagaaTA--CAGGATTTAGTAGGTCATTAGATTTTTCTTTGATTAGTTGTATATTTGTTGTACAATATA-----TAGATTTAGTCACATAAACT-ATACTGTGTGAGTTCTCAGAGGAGTTTAAAAAGAGGCAATAATTAGATAAAACTTGATATTGGATGAGCTATTAGTTTATTAGTAAATTGCAAATAGAAGCACAGACactaataaacttaataaatTCTGC-----CTTATTCAAAGCAAATTTATCTTTACCTTCTTTCTCTTCAGCTGGAAGATGCTGGCTCAAGCAGTTTAGATAATCTACTAAGTAGATACATCTCAGGCAGTCACCTACCCCCACAGCCTACAAGCACCATGAATCCTTCCCCAGGACCCTCCGCCCTATCTCCAGGATCATCAGGTAAAAGCAAACCAGGATATTGCCTCATT--TGTTTACCC---------------AgaaactttattttgtttcttaatatctTTTGTTATTCAGGGTTttccagaaaaacagaagcaaaag-----ggGGGACGG-GTATCAAGAGGGGTgttaatgt---------gtgtgtgcatgcgtagAGACATTGATTTTAGCTCAAAGTATTAGCTCACGTTATTATATTGTTGTGGGTACT--CAAGTTCCAAGTTTACAGGCAAATTGATAGACTGGAGACTTAGGG----GAGAATTACATTACAGTCTTGAGTCCAGAGATTGTAAAATTCCTGCAGGAGAGGAGTAGGAATAGCTCCAGCTTTTTAAGGTCTTCAGGTTTTCAACTGGTTGAATGAGG-CCACTGACACTGTGGAGGATAATCGATTTACCTTAGTCAATCTAAAAACTTTAACATGCTTTGAATTACATAACTTTTGA-GATTTAATAAGAATTATTCCA

a score=4753
s chr3           103341128 246 + 160039680 ATGCTACAGGTTGAGCATCCCTAATCCGA------CATTTGAAATGCTCTAAAATGTAT---GCACTTGTAGGATGCTCCACATGGAAAATCCATAGTTGATCTCATGTAGTATGTTG-CGATCAAATTGCTGGGTGGATTTAAAATATTATTTGAAATTAC---CGGCTATATAT-------ATATACAAACTAAATGGATTTCATGTTTATACTTGAGTCTTATCCCCAAGACATCTCACCCTGTATA-GTAAATCTATCAAAGT
s HiC_scaffold_1  60380722 244 - 233722169 ATACTACAGATTGGACATTCCTGACTCAAAAACAACATTGAAAA--ATCTGAAACTTCTTGAGTACTGATATCATGTTACAAGTGGAAGAAC--------ACCT----TAAAATTTTGAtgctcaaaatt--------atttaaaatattgtat-aaattacTTTCATCTTTGTGTCTAAAGTGTACATAAAACATATGAATTTAGTGTTTAAACTTTGGTCCTATCTCCAAGATATCTCATCATGTATATGCAAACATTCCAAAAT

a score=15458
s chr3           103341434 419 + 160039680 ATTTTAAGG---TCTGAACTTACGTCTGT--------------------CACATTTGTTTT---TGAGGTAATTATCTACTATCTT-----TAATAAATAGTACTTTTCATG--------------------------------TTATGCTATACAATCAAAC--GTGGCTTT-----TATTGTTTCTTAATTAGCTGCGGATCATCAGGAAGAACTGCTGAGAAAAGTGCTCATAGTTTCAAGTCTGATCAGGTGAAGGTCAAGCAGGAACCTGGGACTGAAGAAGAGATATGCAGCTTTTCAGGAGCTGTGAAACAAGAGAAGACAGAGGATGGCAGGAGGAGTGCCTGTATGGTAAGCTCC----CGCCAGGATTTGATGGGAGGTCAGCCG------ATCGTCTCAGT--------------TAGGCATATTTATTTGTCTTTAAATTCTTGTGTCTGACACAAGCTAAGTATTTCTTTTTCTATTTCTGCTCTT------AAGAGTCAGCTATA
s HiC_scaffold_1 113681816 514 - 233722169 attttaaggaaattTGAAATTAGGCTTGTACCACCTAGGCATTTTGAGGTATGTTTGCCTTCTATAAAGTAATTGTCTgttatcttctctttgacagacACGACTCTTAATTggttggggttttttggtttgtttttttgttttttgtaccctACAATCAAACCTGTGACCTTGTACTTGTTGTTT-TTCATCAGCTGTGGGTCATCAGGAAGAACTACTGAGAAGACTGGCCTTAGTTTCAAATCTGATCAAGTGAAAGTCAAGCAAGAACCTGGGACTGAGGATGAGGTCTGTAGTTTTTCAGGAGCTGTCAAACAGGAAAAGACTGAGGATGGGAGGAGAAGTGCCTGCATGGTAAGTTCTTAGACACAGTCATTTCACTGAC--TCTTCCATCTCATATTGTGTTAGTATGAACAGAAGTTCTAggaatatatatttatctttgaatttttatgCTTGATACAAGCCAAGTA--TCTTTTCCTGATTTAGTTTTTTGGTCAGAGAGGCAGATATA

a score=32060
s chr3           103344143 562 + 160039680 AAGTTATTTGTATTCTTTTATTTCACTGGTGTGATTTACAGAAT---TTTAGTATTAAGTGTATTCA----------------TGTAGCTTTGTATATATA------TTCATGTTTGTATA---CTGTATACATG------------------------------------TAAGAATTAAATGATTTTTTTAA---------TTGTCTTTGTTTTC-TTGTAGTTGAGCAGTCCTGAGAGTAGTTTGACACCACCTCTTTCAACTAACCTTCACCTAGAGAGTGAGCTGGATACATTAACAGGCCTGGAGAACCACGTGAAGACTGAACCTACAGATATCAGTGAAAGCTGCAAACAGTCAGGACTCAGTAACCTAGTCAATGGAAAGTCTCCAATTCGAAACCTCATGCACAGGTCGGCAAGGATTGGAGGGGATGGCAATAGCAAAGATGATGACCCAAATGAAGACTGGTGTGCCGTCTGCCAGAACGGAGGGGATCTTTTGTGTTGTGAGAAATGTCCGAAGGTCTTTCATCTTACCTGTCATGTTCCAACACTTCTCAGCTTTCCAAGGTACCAGCAAAATAGTTCATTTACGTTCTTGTTATTCCCAAATCTAAACATATAACAAAGTT
s HiC_scaffold_1 113683494 629 - 233722169 aagttattttcattcCTTCATGTCACTAACAGGATttacaaaatagtttttaaacacAGTGTATACAATAAGGATTAGTAGTGTATAAATCCTTATTTGTAatagtttttatatttgtatatatctgTATGGATaaattactataaatttttaaacacacagTGATTACAATAAGGATTAAATGATTTTTCAAGaattcgtttttgtttttgtttttgttttagttgagCAGTCCTGAGAGTAGCTTGACACCACCTCTGTCAACCAACCTGCATTTAGAGAGTGAGTTGGATGCGTTAGCAAGCCTGGAAAACCATGTGAAATCTGAACCTGCAGATATGAATGAAAGCTGCAAGCAGTCAGGGCTCAGCAATCTAGTTAATGGAAAGTCTCCAATTCGAAGCCTCATTCACAGGTCAGCAAGGATTGGAGGAGATGGCAACAACAAAGATGATGACCCGAATGAAGACTGGTGTGCTGTCTGCCAAAATGGAGGGGATCTCTTGTGCTGTGAAAAATGTCCAAAGGTCTTTCATCTAACTTGCCATGTTCCAACACTTCTTAGCTTTCCAAGGTACCAGTGAAGTAACT-------GATCTTATATTTTCATAAGCCAAAAATATAGCAGAACT

a score=21305
s chr3           103346609 2035 + 160039680 AGTTACATGGACTAATGGCCTTTTTCCCTGTACAGTGGAGACTGGATATGCACATTTTGCAGAGATATTGGGAAGCCAGAAGTTGAATATGATTGTGATAATATGCAGCATAGTAAGAAGGGGAAAACTGCACAAGGCTTAAGCCCTGTGGACCAAAGGGTAAGTTTGA---AAGCTGACTTGTTAACAGAGACTTGATGGTTGTGATCCCTCCTCCACCAATATAACCCCACCCCTATGTAATGGTCACATGACCTGGTA-GGTTTTGTGTCATCTAATGAATCATCTT----------------ATGACTTCTAAAGCCTTAA----TTTTTAGTTCAAGACTTTTAAA-------------------------------AAAGATATTAGACCCTTGTTAT--------------------------------------AACAGCCCTAG---CTGC---------------GCTTGAATTTGTAGCAATTTCC-------------------------------------------------------TTCTGTATGCTGAGATTACAGG-----CATGTTTCC------------------------TCGGGCCAGACTTCACACTTAA--TATGTTTCAA---------------------------------------------------TTCAAATCTT--------------------------GATTTCT---------------------------------GATCCTCTCCC----TCGAAAAATAGCAAATACCAG------------ACAAATACATCTTTCCTTAGTATTCCCTATT--------GCTCTGTTCACCTCTATCGTG-GCCAGAAATCTCTTAAGATTAAAAGTCACATGTGATTATAATGCCATTTTCTTTCACCTCCCCATAT--TTACCACCCTAAAACATTCACAATTCCTTATGCAGACTATTAGGATAATTTGGTGATGATTTCCTGGTTTCTCCTCTTGTT-----CCTTTAGTCTGTTTTTCTATATTTAAAATTTTCTTTTTCTTAAGA---AAAAAACTTTGCCACTT-----TTTAAT-ATTTTTAATAGCTTCTCATGTTAAAAATGAAACACAAATTATTTTTATTTCAC-TCACATTTTCACGGATCCCATCC-TTCCCTGATTTCTACTGGCAAGTATACCTTCACATAGTTCTGTGGTAATTAGAATTAAGTTTGGCTCTAATCTAATATGTATGCTTG--ACAATTCT-----------GTGAAGAGAAGGAATTTGCTTAGGATATACAA----ACATTAAAGTTTAAGTAAGCAGAAACTAAATGTTAGTCTAATAGCTCTTTTtggcgcacacctttaatcccagcactggggaggcagaggcaggcggatttctgagtttgaggccagcctggtctacagagtgagttccaggacagccaga-gatacacagagaaaccctgtGTGTgggg--ggggggggggcgggggggg---AGATcttgtgagccagaggcag---cacagtggcggctagtatggtctatataggagttgtaaacaagtcagacctgcatagtgaaaccctttctcaaaaaagataaaaGGAAAAATGAAAGGGAAGGTGTTCTTTGTGGGGTGGGGTGGGGGGGA-TGACGGGGTTAGCAA-------TTTGATCAAAGAGAGG----GGAATCTTGTTCATTTTGAACCTGAGTGTAGTCTGTGAAA-----AGCAGAGGATTAATACTTGGTTTTACCTGCCTTGGGGAATTGTATTAACTACTAATGGTGAAATTTTCTTTACCCCTTTA------------CTGTAAGTTGTGTT---------------------TGTGACTCATTTCTAATTTTGTA---------GCT---------ATGAATTAATTATTTTAGTTTTATTAGAATAAAAACTCAGTAGAATAGATCATAGTTTCAAAATTTAAAT-CAAAGCAA-ATTATTTTCTTT-------------------GATACCAATTATATAGAAAG-TAATGTTCAGTTTATTATAATAACACCTTGTAG-------------CTG-----TATTCTCCAAAACATCAGAAAAAAATCGTTGTCTTCTTTTTCTTT-TGGGGCCAGAAATGTGAACGTCTTCTGCTTTACCTCTATTGTCACGAATTAAGTATTGAATTCCAGGAGCCTGTTCCTGTTTCGGTGAG-----------------TATTGCCCTGGTAAGGAAAT-------------CTGTGGGCTGTGGCTTAGGCACAGGTAGTTACTCACAAGTACTCACAAGTAATGAGTTCCTCCACTACCCACGACTCCCATTTTCTGATACTTCCTCGCCGGTCATT--GTTTTAGAA-----CTTAATTTTAACTGATTGTTATATATACTTGTATGGTACAGTATGATGTT----TTTACGTACATA----AAATTTAATTAGACT----AACATGCCCATTAC--CATCAATTTAAATTTTT
s HiC_scaffold_1 113686576 2418 - 233722169 AATTACACAGTCTGATCACGTTTTTCCCTCTTTAGTGGGGACTGGATATGCACATTTTGCAGAGATATTGGGAAGCCAGAAGTTGAATATGACTGTGATAATTTGCAACACAGCAAGAAGGGGAAGACTGTACAGGGATTAAGCCCGGTGGACCAAAGGGTAAGTGTCAAATAAGTTGATTTGTTATTAGGCTTTCTGTAGtt--------------aactatat-attttttctctgtgtaataTACACATAAACTGATGCAGTTTTACTTC-TCAGATGGTACTTTTTTTCAGGTGGTAtatagatgattttttaaatttttatcggtCTTGAGCTCTAGGCTTTTAGATTCAGCTCCTTCAATCTTAACATGTCCCAACAAAAATCTTGATTTTTAGTCATCCTCAGAAAGCAAGCATTTGGGGCCACGGatgtagctcaacagcacaagtacctgcctggcaagcacaaggtcctgaatt-----caattcccaataccaaaaaaagaaaaaagccaggcgcattggtgcacacttgtaatcccagcatttgggaggctgaggcaggaggatcgttgtgattTCAAgagcttcaaagtgagctcaagaccagcctaaactgcatagaaagaccatgtctcaaaaagcaaaaggaaagaaaaataagcaattagccaggtgtggtgacacatgcttataatcctagaaCTTTGGCggactgaggcagtaggatcactgtgAGATCGAGGAGAGCCAGAACTACATCATGAGACCTTGtgtccaaataaataaataagaaacacaagcagttaacatttaaaaatgtgttgctCCC-----TTCATTATTAAATGGCAGTGCCATTCACCTTTTGAGTATGCTGGAAACCT------ATTAGAAAAGAAGCATGACTATGACACCATTCTCTT---ACTGCCCATATCATTACTACCCTAGACACTAAGCATAGTCTTACCTGGACTTTTACAATA--------ATAATTTCGTGACTCTCCTCCCTATTTCTTCTCTTTAGTTTGTCTTTCTATActgaatcttctttttttttaaagaagtagaTAAATCAATCACTTCCTTGCTTAATAATCTGTAGTAGCCTTccatattaaaactgaaattcagg--ATCCTTTTCTCACTTCAGAGTTCTATTGATTTGTTCTGTGGTCTGATTTTTAGAGACAA----AATGTCACATAATTCAGTAGTCATTATAGTTTAGTTTAGC-----TTTAATGTGTATACTTGCAAAAATCCTTCCAGTATCTATTAAAGAGTAGATGTGTTTTTAGGATGTGCAAACTGACCTTAA-----AAGGGGGTTGAAGCTGAGAATGGG----------------GGCAAATGCCTATAGTTCCAAGACTCGGGAGCCTGACGTAGG-AGAT------------GACCACC------------------TCAAGACCACCTATACtatgcatagcaaaaccctaactgagaggctggagatttagctcagtggatttAGATTtagcggtcatgagttcgatccccggtaccgataaaaagag---aaaaagaa-----aaagaaaaaaaatttggaaaaaaaaaccctatctaaaaaaaacgTTAAGTAAGTAGACATTAACAGTTAACAGTTGTAAACTGCATTTCAAGTTACTGATTgtgtaagaaaaattatttttaattgtatagaAAAATCagagctttcatttttttgagctGGA----AATGTGTGAAGTCATTTGAAGGGGA-TAACATTT-GTCTCACATGCATCAGAAAATTACAGTGAGATTCAACAGtgatgatttatttacttatttattaccAGGTAATCTGTAAGTTTTTTTCACAAAAGTGCTATGTATTGCTTTGACTCCCTTCCACTTAGGTAAAAACCAAGGCTAAATAATAGATAAACTGATAGAGGCACACTTATTTGA----------AGTAGAACAGAACATAGTCTCAA---TTAAATGGGAAGCAAGATGGTTTTCTTTGAGTTCTTGTATTTAGATAGATAATTAGTATATAGGAGGCTGATGTTCAGTTTGTTGtggtaatattttataatacCATTCTTACTCTGAAGAATATTTTCTTAGGGATC--AAAATACTTTatgttttcctgttctttcttggACCAGAAATGTGAACGTCTTCTGCTTTATCTCTATTGCCATGAATTAAGTATTGAATTCCAGGAGCCGGTTCCTGCTTCGGTGAGTTGGACTCAGTACTACCTATCTCACTGGTAAAGTTGTGTATAATACTTGACTGTGAACTCTGGCCTTGGACTGGGCTTGAATTAAAACAGACTTTCTG--AATAAGCTCCTTGAC---------------CTCTCTGAGACTTAATACCcacttctttgattttaaaatagtgtttgtAGTTGACaaataattgtgtatattt-taagGTATAATTTAATGTTTTGATTTGTGTACACATTATGAATATAGTCAAGTCAGTAAACACATCTGCTACCTCATCagtgtagcttttt

a score=238158
s chr3           103351941 6864 + 160039680 [encoded data, 7622 characters]
s HiC_scaffold_1 113690721 6961 - 233722169 [encoded data, 7622 characters]

a score=12224
s chr3           103384930 1190 + 160039680 GTGATCTCCACTCCCTGTCACTCTTTCTCCTTACAGCGCTCAGGGCATGTGTGAAAGGCACTGACCTACTTTGTGCCTTATTCACAAACAGAATAACTCCAGTTTCAGATAGTGAGCTTTGAACTGCGTTTCTTGGTATTCAAGTCTCTTCACTTCCTGTGTCTTCCATTGGCTGTTCCTCCCCCTGC--------------CCCCACCAAGG---CACACCCCCAGC--------TCCCACTAC------------------------------------------------------------------------TCCCCTTTATAGA--------TTCCCCCACCCCAGTCTCCTCCTTCCCAGGGGTTCTCTCTGCAGCTTACTT-CATATCCACACAGGCACAACTTCAAACCGCAT-----------------CTGTGCTGACTGCCCCAGTGGCGCTTCTTATCT--AAGCAGCGGCAGCAGCAGGctgggtgaccaaggcagcaaa-aagaatttaatggaatgatattaggtctgtccagaattggcaggcaagctg--gagaccaggctaggagaatgcacagGAGTGTGGGGGAAGCACAATGGTTAGACACTTCTCCAGGGACATACCACAAGGGCCAGCTGGTCAGGACCTGCTGGTCCCTCAATGAACACACTGCCTCCCATCTTGGGCCACACTAGAGTGGCTGGGTGGAACCTGAGCTGTCCCTATGTCTCTGTGTCACATCCTGAAA-----------------------TGCTA---TGGGTACAGAGTCGGGGGGAGAACGGGCCTTG-----GCGGAAGGAGGGGCTCTTCCTCT---TGCCCTCCATCCTGTGGCAAATTCTTCATACACAGGAAGAAGGTTCAGGGGC-TGACACCTACCACATCTAAGATGTTTACCAGTTGACCTACCCCACAGAGGCTGTCTCAACTCCA--TTTTAGGCAAAGAGACTGCCTGGTTCATAGTCCCAAGATTTGTCAGGCCAGGCTAGTATTGTCTTAGA-------CTTAGGTCTTTTTGGTTCTGCTTGGTCCCAGCT----------------------------------------------------------------GCCAC------------------------CCATTGA---------------------------GTCTGAACATAGATTTCTAAGCCTGAGGACTCTGGCCCTGGCTTAAAGACCTTTGTGCATCATGATCTGCTCCTCCTCCTACCCACCCACAATTTAATGGTGCTTATCTTGAGGGGTAGGTGGTGGGGAGGGAGTGGTGGGCAGAAGTCAGCA--CCTTAGCTCATTTTGGCCAG--GGTGGGGTGGTGGCGATGGTGGTGGCTGTTGTTTTGCA----------CAGAGACTTTGAAGAGGTTT-GAGTCAGTCTATAGACATAGGACAACTCCCTGCT
s HiC_scaffold_1 113729679 1408 - 233722169 gtgaccttcactGGCTCATACCCCT-------------CTGGTGACATCTGTGAATATCACTGACCCACTTTGTGCCATATTTACATGTAGAACACTTCCAGGTCCA-ACAATGAAGTTGGGACTCAGTCTCTTTGCATTTGa-tcttttaatattccatttgttctatcctctttcttttctcctttttgttataCGTTTGCAGCACCGAAGGATCACATTCTCTGCCACTCTTTCCCCTCCACCCTACACCTGTGTCTGGTGCCGAGAACTGAGCCTGTGCTCTGCTACTGAGCGTTACCCTCAGGCTGTCTGTGTCCCTTTCATAGATCACTGTCTTTCCCTCTCTGAACGTTTCTGTCCCCAAAGGTTCCAGCTCCCACTTGCTTCCGTCTCTACATGTGAGCCGCTTCAAATCACCTTGTAGGTTTAACTTCCACTTTTGTGATCACAGTGGTCTTGCATCTTAGCTTCAAACAGCAGCAGAAGCA---------------ACAGCAGACAGGCATTTATTAGAACAGTAT--GGTTTCTCAAGGGTTGAAAAGAAATTTGAAGAGGCAAAGCTTAGGAAATGGACTGGAGCCAGGGCGAAG--CAATGGCCAGA-ACCCTGCCAGGGTCACAGCA-AGGGGCCACCTGGTCTGG-CCCACTCTTCCTTCAGTG-----ATGGCAGCTGGGCCTGGGCCACTCTGCAGTCACCTGAGGGAACTCTAACTA-CTCAGCTTCTTCGACTCATCTGCCCAAAAGGAGGGCCACACCAAGGCCACCTGCCAGTCTGGCTGTCAGGGTGAGAAGAGAGCGAGGTCTGGTCTCGTGGAAGGGTGGGCCCTTCCTCTCACCACCATCTAGCCAATGGCACATTCTACAAGCAAAGGAAGTGAGTGCAGTTGCATGCGGCCCACTGAGCCTAAAATGTTTTCCAGCGGGCCTTTTCCATTAAAGCTGTTCAGACTCTATCTTTTAAGTAAAGAAGATGAATGGTAAGAGACTTGAAGATT----AACCTGTAACAGGACTTTTCTAAAGGCCTGTctgtgttctttttgtttctggttgCTTCCAACTACAAATAACTAACTgtcttgttcattttgttttttttaaatcagtactggggatcaaactcaggaccacacgcTTTCAAGGcaaacacttatgccactgagctaaatccccagcccctaattgtCTTGTTTAAACATAGATTTTTAAGCCTGAAGACTGTGGATTCTAGCTGCTGCCTTGTGTG--------TCCAATTCTCCTCAT-CCCACCACCAATTTCATGGTGC-TATCTTGAGATTTTTCTGG-AAAGACGAGCTTATGGAT---GGTCAGCATCCCTCAGCCCTTCACAGCCAGCAGGTGGGTT------------------TTTAGTTTGGCAGAGACAAAAGGAGAGGCTTGAGAAAGGTTTAGAAT-----TACAGTCACAGGCTTATTTCCTGCT

a score=21993
s chr3           103386618 906 + 160039680 TCTTTTGATGGGCCTTTAACTTTTCTTGTAATAACAAGCTCAGAGTTCTGCTTCCCGGCCACATTGGTGTCTGACTGTCTTTAGAAACCTGTAAAGCAGT-----GAGTGACA-------GAGCAGAGACTGCGCTCTTTCACAAGGACGCATGCGCAGGGAGTGACCGAGAAGAGACTGAGTGCTC-CCACAAGGACGCATGCGCAGGAAGTGACAGAACTTTAGTCAGAAGCGAACGCAGAGGACAC----AGGTGTTTCAACGTTCAGGAAGTT-TGAGTCCTTCAGATCTTGTTAAGTGTCCTTACAGTAGACTCTGGAGT--CACAGTCTTCCCTGAACCACGTGACCCA----CTATCACCGCAGCTGGAAGGCGGGGTGGGTATCAATTCAACAGGTGTTGAAGCCTGG--------CTGTGCTTG-----------------------------------AAGAGGTTGGTTTTGCTCATTATTGGAAAATCTCCGGGTGGGAAAAG-AGAGGCTTAAACTTCTCGTTT---TTTCAT---CTATCCAGTCTTCGTAGGAGAAGTCACACTCACAACAGCTCCTGTGACTCCTGCTTTTCATTTTGCTCTGTGTGAGTAGCAATATGGCCTTCAACGTTTTGCCTGAATGAGGTTTTTTTATTCCAGGTGACTCTAAGTGATAATTTAATTTTAGCAATTTACCACCCAGGGCCAGCAGCTGCCAGATTCCTTGAATCTTAGCTGGATTTTACTGCCTTGTTCTCTAAAATCCAATCTTCCAGCCAGCCCTCCAATTCCC------TGTAGCCCTTGTTGATTCTTTACTA-TTTGGGTCCTTGAGTACACACATCAGAGACCAGCCGTGGATGACTTAATTAGGGAAGGAGCTGTCTTAGG-GAAGCCTTGGACAGTACATGGCGTCTACA-GACCTAGCCAGCCAGGCTTCGAAAACGAACAGGagctgg-gagtggtgg
s HiC_scaffold_1 113733438 958 - 233722169 TCTTTTGGTGGGGATTTAGCCTTTTAAGTAATCTCAA--TCAGCTTCCTGCTTCCAGATTGTGCTAGGCTCTG----CCTTTATGGATCCAGATAGCAGTAGCGTGAGAGAAAAAGGCATGAGTAGATGTGGCTTCCTTTTGTGAGGAGGTGCGTGCAGGG---GACCAGGCATCTTCAAGCTACTCACCAGCAGCTTGACTTCAGACGA-GCAAGGGGCCTTGAGTGTTGGATG---GCAGGAGACACCCAGGGAGGGTTTAATGTTCAGGGTGTTGTGAGTCCTAGAGATCTTTTCAAATGCCCTTATTATAATTTTGGGAGTGTCACTGAATTTC-TGAACAA--TGCCCTAAGGGCCATATACATATCT---AGGCAATTTG----TTAATTCAGCTGATGTTGAAATCTGGTGATGAAGCTGTACTTGGTTTCCAGCTACCTTAGCCTTAAAAGACTGTAAATAAGGTACTGTTTTAGCACATTACTGGAAAATCTTCGGGTTGGAAATGTGGAGATTTAAgtttgtcatttcctttttataaacTGCCCTGTCCTCTTAGGAGAAGCCACACTTACAACGATCTATATGATTCatgttcttcattttgttctatg-------CACTGTGGTCTTCAAAGCTGTGCTTCAATGAG--TTCTTCCTTCCAGGTGACTATctgtgataatttaattttagcaGTTTATCTGTAAGACCCAAGGGCGTCTAGATTCCCTGAACATTAACTGGATTTTACTGTCCTGTACTCTGCTAACCAACCCTCCAGTCAACCTTCCAATTTTCTTGCATTGCTGTCCTGTTGGTTTCATTACTACTCTGGGTCCTCAAGTGCAAACAACAAAAGTCAACTCTATTTGActtaattagaaaagaaattgatGCAGGAGGagcactggacaatgtacagagCCCATAGGGGCTGGAGAACCAGACTGAGCACATGGGCAGGAGCCAGCGTGAGGTGG

a score=57370
s chr3           103400797 1911 + 160039680 GGGACTCTGGCGTCCTGTGTGTCCTGA-ACCCACTCCATGTCTCTGTCTTAGTGCCT---CTGGGCCTGCCGAAGGCCTATTCACTTTCTGGGTTCCCACCTGGACATCAGCCGATCTATGGCACCCCTGAGACT---TGATATGTCTACTCTTCTGTGTGCCTCCCCCT----------CTCCCTA---TTTCCCTTACACACCTGCTCCCTGATCTTGCTGACTAGACGGA-AACACAGAGGAGCCTGTGAACATAATTCACCAATGc-----atgcctttctcacaactgtatccccagcacacagaccgtagttgatgcttaataaacgttggtggaataaatgtatG--AGTTAGCATTTGGACAGCTCAAAGCTAAGTATTGATGCCTCTCATAGAAGACTTATCTGCA-TGGTGGGAGGGACCACAGAAGCTTGCTGTTGGAAGATGAAGTTCTGCTCAGGCTTGGGAAGGCAGACAGATC-AGGCTGGCAGGGGCCAGAGATACCAGACTAGATGGCTGACACCTCTTGAGTATGAAAGAGGAAGGATTTGTGTCACTGGAGG-ACCTGGCTATTTTGGGTAGTATAGGAAC------TTTCTATGTGTTTTAGATACTGCTGAGGAAGCACACTTCCTCCTGTACCCATCCCAGGATGTGCTGTGGTAAGGATGGCGGCTGAATAAGCCCTTCCTTCTGGACCCTTTTCTACCGCCATGCCCATGTCACTGCTGCCACCCCACA-----ATGGCTGGAGTGGGGTGCAGGCGCTTTGCACGAGGAGCCAGCCTGTTGGCTGGAGGGTTCTGTGATGTGCGGTATGCAGCCAGCCCT-GGCTGAACGTCAGGAGCACCATCTGCACCCGCAGGCAATGCGATGCTGCAGCTGTCTCAGGCTAGTCAGGCAGAGTTGATGTAAGCTTAGCAAATAGCTTTTCCAGGAGCTTTGTAAATTTCCAGTCTGCTGGGCCACGGTTCCCC---GAAACTGCCACCAGTCAAATG-TAAATTGCATCCAAGACCTGAAGGGTGATCAGCAAATATAGGGACTCATCACAGAATTGGAAAGGAGTCTGGGCCTCAGGTGTCTcccccgccccccccccccccgccccccAGCAGACTCTTCCTAGGAACGAGACTGATGCTCCAGCGA-------GAATCCGTGAAGAGGATTCGTTGTCAAATCTTCCCAAGTGTGGCTGTCTTCACACATAGACATGTCCTCCAGATGCTGCATGTAAAGTGAATCTTTGTTACTTT--TAAAAAATT-----ACTTCTTGTTTTGGAGTCACATGTAATAATTATATAT-ATACACGC---ACAACATGATACTTTTATTTAACACAGCCTTTAATGTATTTTTAAGGAATTCTCTAGTAAACATTCCTTTTGTTAGGGTAAAAAAAAAAAAAACCAAAACCCATGGCCTTGTCTTTCATGTAAATTGAGTATAAATGTGGATGTATTTCTGCATATGTG--TATCTGCTGTGTGCCTACGTTGACCGTCATTCATCTCTTTTGGGAAATGCAGAAGAGGTAAGCCCCTGACT---TCTAACATTTCCT---CCTCATTTAAAAGGGAGAGGGAGGGGTTGACTGACAGGTTCGCAGTAGCAGGAATTAAGATTTCACGGTCGCTGTCCTACAC---ACATCATCTGCACAACAAAGGCTAG---GCGATATCACACTGCATTGTGGGACGAGTGCATC------CGTAGCTGTGTCTCAGATATGGCTTCCTGAGATTTTAGTGCCCATGGAGGTTGAACGTGCTCACTAATTGAAGGACCAGGGGACTTCGTTGTTATTCTTTAACAA-------------AAGATGCATTTATAAATATACAATATAAATCATCTGTG-TGGCTGCAATGTCCCCAGTTCCTAATCTAATTGGCTGAAACTACCAGCCCTCCCT--TCATTTCCATATTAGCTAACAAGCAGCTTTGGTAGAAATTAGCTTTCCAG
s HiC_scaffold_1 113744207 1939 - 233722169 GAGACCCTGGC-CCCTGTGTGAGCTGCTGCCCACTCC----TCCTGCTCCACAGGCTATGCTGGACCTGCACAGTGTTCGTTTACCTCTCAGGATTC-ATTTTGATCTCAGTTCTTC-ACAAAGCCTTTCCAACTCAGTGATCTGCTCAGACCTTCTAGTGCGTCCCTGTAATATCTTGATTTTCTAGCTTTCCCCATATAGGTCTCTTTATTGGTCTTACTGACTAGACAGACAATGCTAATGCAGCAGCTTATTGTATCTACCAGTACTGTATAGAACTTTCTTACAATTACATCCCTACCAc--------cagtagatgctcaataaaaattTATGGGAGGAATATAAGTCAATAACTAATTGAATAGCTCAAGG----ATTTTAAAACA---CAGTGCAGAATAATCAGAACTGGGTGGAGAGGTCAGAAGGGCTTGCTG---GAAGACAAA-TTCTGTGCAGGCTTAGGAAGGCAGACAGACCCAGCCTGGCGGGGGCCAGAGATACTAAATTAGACTGTTGATACCGCT-GAGTGTGATGGAGAAAG-ATTTGCATTGCTGGAGGGAAGTGAATATTT------GTTTACTAACCAGGAGTTTTTAGGTATTCTAGACGCTGCTGGGAGACCATGCT-CCACCCAAGCCTACTCCTG--CGTACAGCAGTAAACGTAGGGGCAGA-TGAATTCTGCCTTCTGTGCCGCTCTTTGCCATCATGTCTGTGTCAGTGTCACAGCCCTGGGTGTGGGGGGCTGGAGTGGG-TGCAGGTGTTCCACAACAAGGGCCAGCTCATTGGCTGGAGGGCTCTGTGATACA-GGGATCCAGCCAGCCCTTGGCCACAGGACAGGAACACCATCTGCAGCC-CAGGTGCCACCGTTTTGCAGCTGCCACAGCCCACTCAGGCAGATTTGACACAAGCTTAGCAAATAGCTTTTCCAGTAGGCTTACAAATTTCCAATCTGCTGTGCCACGTTTTCCCCTTACAACTGCCACAAACCAAATGTTAGATTGGATCCAAGACATGAAGGGTAATCGGCAAACGTATGGACTCATCGCAGAA-TGGAAAGAAGGCTAGGGCTCAGCTGGC----------------------CCTCCGAGCAGACTCTTGCTAGAAATTATAGGGTTGTTACAACAAACATTATGACCTCATGTACAGGAGTAACTGGCAAATTTGTAGTAGTGTATCCGTCCTTATGCATAGATGGATCTTTCAGAAACTGCATGGAAACTGAATTTTTATCACTTTAATGCAAAATtctgcaattttaaatttttaaaaagcttttcagcTTTATCTTTGATACATACCTAATAAAGTAATGTTTTGACTTATTGCAGCCTTTAATGTTATTTTAGGGAGTTCTC-AGTAATCATTCCTTttgtcaaagtaaaaaaaaaaagactctcaa--------TTTGTGTTTTACATAAATTGAATagaaatgtatgtatatttatgagtctgtgtttacatattgtttacCTGGGTTGAGGATCATTAATTTCTTTTGGGAAATGCAGAAAAGGTTGGCTTCAGACTAGCTTTAACACTTCTCATGCTGAATTTAAAGCGGTTGGGGGAAGACAGAGTTCTATGCACAAAGAAGTTGGCACTGAGAGTTCATCCTCATTGTTATCCATACAACATCATCTgcacaaaagacataaaaatgcaaaCTTGCACAGCCTTCTGGGATGAATACATCATGGCTCAGAGCTGCATTTCAAATATAGCTATTTGGTATTTTAATACACATGGAGGTTAAAAGTACTTACTAATTGAAGAAATAGGGGACTTCATGGTTATTCCTGAATAAAATCTAATTATATAAGACAAGTttataaatatacaatataaatgatctgaGATGATTAGAATGTCTCCAATTTCTATTCTATTTGGCTGAAATGACCACCCATCCATTCTCATTTCCATATTAGCTAATGAGCAACTTTTGTAGGAATTAGTTtcccag

a score=18834
s chr3           103412190 1059 + 160039680 GTGTGTGTGGGGACAAGTTCCA-AGGAAACTGTGGGATAATGAGTAGTTTTCTCCTTTTT-ATTGTAAAGA-------------ATTTCAGTGCAGACTATATATTTTTTTTCAACCAAAGGAGGGGAAAAAAAAGCAACCCAGCCACAACCCCCAATCTCAAAGCTTTAAAGAAAACTAGCTTCCTTCAGCAAGACTTGTTATTACATGCTCAGAAAACCAAATAGTTTCATTACTCACCAGCAGAGA---GACCGCATGATTCAAGGATATAGAGTATATCTATTAATACTGAGCCACTGGCTGGCTTTCCAACCGGGAAGATGTTGGCTCAGCCAACTTTATAAATCATATCTTCTTCTTCCAGAGAACCTATATTTCCTTCAGTTGTCAAAAATAGCACTGGGTGGAGAGCTTCTGGACTCTCCTCTACCAGATGATGTGTGCCATGTTCTAACTTGTCCTCCCCACCAGTTCCTGATGGCTGTGTGTGTGTAGCAATGCTCACCTCTGAGAAGGCACTTTGTGAGTTGTTTTCCCATACAAACACAGTGATGTCTAAAATTTGTAAAGGCTGTACTGGGGGTAGAAGAGCCACATGTAAATAA-------CTGTCCCCAGC----AACTTCTGTTGCCAACATAAAACTCCCAGTAGCACATTTTAGTAAGCCTATGTTGGGAGACTGAGAGACAGAGTTTGATGAATATTTTATTCTGTTACTCAAAAAAAAAAAGGTATTTTTTAAAACACCAATTCTTTCTGTGTGAAAAA----TTCTGTTTTTCTAAAGAGAGACTATTTCAGAGAGAATAATTTAGGGAGCCCAGAGACCTCAGAAACCATCAAAAGAGGCCAAACCAGA---------------GCTGCTTTGGAGAGAAAACAGCAAATGTGTTTTCTAAAAAAATTAATTTTGTGATGTCAAGTTTTACCTCAGTGAATTTTGCTTGGTTTTCTGTGTTTAGTGCTCATTTTGTACGAGGCTCATTTTG-AAGGCAGCTTTTCTTAAGTGTGTAATATCTCCACAGACTTTAAGGACCTAGATTGGCTCATTTACAGCTCATGAGTATAGGGTCAGCATTCTAT
s HiC_scaffold_1 113757242  839 - 233722169 GTGTACATGCATCCCAGTTCCACAGAGGACTCTCAGA--GTGAgtagttttctccttttttatagtGAAGATATAAAAGTAAATCTTTTGATGCTAACTATAT----Ttttccaaccaaaaaaaaaaaaaaagaaaaaaaaaag-----------aatttcaaatctttaaataaaactattttccttGAACAAGA--TGTTATTTCTTGGATAGAAACTAACGGGCTTTCATTACTCACCAGTAGAGACAAAACCACATGCTTGAAGGGTATAACATATGCCTATTGATAGTGAGCCACCAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CCCA---------------------------------------------------------GAGTCATTTTCT-ATACAAATATAGTGATTTGTGGAATGTTTAAAAGCTAAACTGGAAATATGATAGCTATATGTAAATCAGTTatttttgttatcatttcagaactTTTGTTGTCATTGTAAGACTCTCGATGGTAGGTTTTTATAAATAGATGTTGGGAGATTGGGAGGCAGGGTTTTAT--------TCTGCAGTCCCCCAAAA-------GGTATTTTC----AAACCAATTCTttgtatgagaaaaaaaaatactgctgtGCCAAAGTGAGCTTATTTCagacagaataatttaagaagcCCAGGGACCTCAGAAACtttcaaaagaagcaaaacagaattgTAAAGTGGTCTCACTGCTTTGGAGGTAAAGCAGTACATATGTTTTATAGGGAAAATAACTTTTATATGTTGAGCTTTACCTCAGTGCAGCTTGCTTG---TTTAACGTTTAATG------TTTTAGGGTACTCATCCAACAAAAAAGCCTTTCTTGTGGACACAGTATTGCCAAAGCTGTTAAGGAGAGAG-TTAGGTAATATCTGACCTGTGACTCT--GTCCAGCATTCTGT

a score=27041
s chr3           103415441 1279 + 160039680 TCTCCTTCTGGCTTTGA--------CTCAACCATAGTCATGCCCAGGATCACACCTAGCTTCTCATTAGACCTGCTCTTTGGCTTTTTGTCCTAACAGTCTTTCCACTTGAGCT-AACTTGAACCTACCAGACTGTAGTTGACAGGAGCCAGCCAAGGTGAAGAGACTGTAGT-GGGCTAGGACTTTCTCTGTCCTTTCTCTTGAACCTCCCACCTCCACCCACTCCACCACCCCAACCAATCTTCCCACCATTTACATCTGCACATGCAAATAGAC--CCACAGGTCAGAAGCCTGCCAGTGTGACAATGGCATTGTGAATTCAGCCTAGTCAGGA-TAATGGTTA-----TCTGTTTGCTTTCTCAGTATCCTTCTCAGAGAATCCCACAGTGTGAGGTCAAACAGGACAAAC--TGCTACATAGAACAGCTAAATGAAGCAGAAGACATTGAGGAGTCAGAAGGTGGCTGTGTGTCTGGTACGTCTACCCAGTGACATGGGCTTC------------TTGTAGGAACTTTAGGGCTCTTAGAAGTCAATAATGCTTCCATTACGACTGTGTTAAGTAGACATGATAAATGAGATGCTCGCCATCCTTAATTGAAGATGTAGATTTCTAAAACAAACCATCACCACCACcagcagcagcagcaggagcagcagcaggagcagcagcagcagcagcaggagaaggagcagcagcagcagcagcagcaggagaaggagcagcagaagcagcagcagcagcagcagcagcagcaggagaaggagcagcagcaggagcagtagcaacagcagTTCTTGGGAAATGAAAGCCTA--GGCCCCACCTGCCCACTCACTCACCTGTCCCACCCTGCTACTCTGAGTCCTGCTACTCTGAGTGTATACTTAGCTCAGTCACCTAATTAGGTTAACAAGCATTTTAAATGGACTCAGCTTCTACTGCTTGAGATAAGATCAGATTTGAGATTTATAGAACTCAAACAGAAGCTCTGGGCTCAGGCTTGGCAGCCCTTCAAATATT-----------TGTCTATCTTGTCGCTTGGAGGAAAGGATGAATTCAATCC-ATGTGCCCCTGCTCTCGTCCTGCCTACTTTCTTCTGACCCTTGGTGTTGGCTGTCCTTGCATTTTAATTTAATTGGCTCCTAGCCAGG-CATGGTTAGAACAAACAAGATAGCAGTTCAGAATCCTTCCATGGCTGC------------CTGGATGCCTAAGAACAAGAATG--ATTTTTTTTT----TTTAAAGTTCAACAAGGATTAGCTGGATATGGTGGTGTACCgaggcagaggcagaggcagaggcag
s HiC_scaffold_1 113759827 1124 - 233722169 TCTTTTCATGACTTTGCAAGGTTTCCTCCGTCACAGTCATACCCAGAGTCCCAACTGGATTTCCATTACAGCTGCTCCTTTGccttctcttttaatttcctttccatAGGAGCTGAAATCTAACCTATT-GCCTGCAGTTGGAAGGAGCCAGCCAAGATGAGGAGATTGTAACAGGGACAGAAATTTCCCTTTCTCATCTTTTGGTCTGCTCACTATGACCTGTG-----GCTTCCAAAATTCTTTCTGCCA------------CATGTAAACAGACACCCGCTGGCCTTCCGC-TGTCAGTTCTGCAGTAGCAGTGTGGGTTGACCTCAGTCGGCACTGATGTGTACATACTCTATTAGCTTTAGCAGT-TTCTTGCCTGAGGATCTTGGGGTGCCCTATCACACAGGACAGGCCCTGCCgtgaaaagcaaatgaatgaggcaG--------------TCAGAAGGCACC-----ACCCACCGCGTCTGCACAGTGACACATGGTCCGTGCGGATTCCTTTGTAGGAACTCTGGGCCTCTTCAAGCACAGCGATCCTTTGGTTAC-AGTGCGTTAGGCATACGTGATAAATCAGATGCTCTTCAT---TAATTAAAGGAGCAGCTTTCCAAAACGAATCACCA------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTCACAGTTCTGTGGGACAGGAAGCCCCCTGGCCTCACCTGCTTGCTCACTCACCTGTTC--------------------TCCAGCTCAGAATGTGTCCTTAGCTCAGTTGCCTAATAAGGTTAACAAGTATTTTTAATGAACTTAGCTTCTACAACCTGAGATAAGATCGTAACTGAGATTTATGAAGCTCAAACAGAAAATTTGGGGTTAGGTTT-GTAATGATCCAAATGTTTTTTAGCAGACTGTACACTTAGTCACTTGGTGGAAAGGATGAATGCAATCAGATGCTCTCCTGTTCTTACGTAGGGTGGTTTCTTTTGGTCCTTGGAGTTGCCTGCCTTTGCATTCTAATTTAGTTGGTTACTTTCCAGGCCACTGttagaacaaataaaataacattgtAGCGTATTGTCATGGCTGCAGAGTACTGCTTCTTGCCACCTAAGAGCAGgagtgaaatttttctttccagtttagaGTGCATGCAGCAGGAACGGGAGGTCTGGTTGTTCGTGGGTGTAGGCATGTGCCTATGCAG

a score=35338
s chr3           103417648 2778 + 160039680 CTTTTCCTTTTCTGC----------tgttttagttacccagccctacataacaaactaggtaaaaacttagtgccctaaaa---------tcatctatatgatcataatttggcagtttgggccagactcagagcaggcatgtttgaccct-tgtacac------------------ttactggggtgg----------cccatgaagccgg----------tgcaggctgctgactgggcatttgggtggggctgctagccaggagtctctcctgtcctcctgcggaccta-ctgtgtggctgcgtgagcttcctcagagcatagtggctgggttctaaaagaaacatagtgggagctgccagttttcttaaaggcgaggcccaggatgggaataacatcatttctactgtattctagtggccaaagaaaccacaggcccagcccagactcatggatgtagagaaatagacc-cacccttcagctggagaaatgatcaaAAACTTATGAACATTCTGCTGCTACTTCTGTCCCTGCATAGTTCTTGTTGTAGaacaattcttagtttt----actttc--------------------atttctttttcaaactaaacttgagaatagcattacacttgattttttttcccccaagaccgggtttct----------------------------------------------------ctgtgaagct-----------------ctggctgtcatgaaactcactctgtagaccaggctggccttgaactcaggctgcctc------tgcttcccaggcactgagat-taaaggcgtgtaccaccactgcccagtttattatttaccaaaa-----------atagcacatagt---------------------------ctatatctgtaaaatgagt----------tccatccatctacctaccttttttgtcataacacatccatagaggtgtctaggatggtgtttaacaaatattaattgtatttctagat--ataatataggatgaattttaatttaattttttacattacagttttgaaaatacttacctatttgttttttt--ttaaatgggtaCCAAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt-gtgtgtgtgtgtgtgtgtaggtcagagggca---gtatttagaggccattatctcct------tccatcactgtgggtcatggagatgg---------------------gactcc----gggttat-ctggct--tggtgggggtgcctttactatttagttatgtctct----gactcAGGATGA-------------AATTTTTA-AAAGTTACTTTTAAT---------ACTTTTCGATTTTGCTTACATATCttgttttgttttg--ttttgttttgttttgttttgttttgttGAttttttgagacagggt----ttttctgcatagccctggctgtcctggaactcactctgtagaccaggcttgcctctgccttccaagtgctgg--gactaaaggcgtgcgct---accacacctggctT--------GCTTACATATCTTACATGTAGCATTTCT--AAGACCAATGAAGTCATTGATTTTTATTAAAAATTGGAAGGAAATTGTTGGAAAAAAATTGTCTCTGTAGAGAGCCAACACTCAGAA-GTCAGTGGGTTGGAAGTGACCTGGGGAACTACTGAGTGCCACTTTATGATGTG-AGGAAGAAGA-GGAGACCCAAGCAGTGACTTGCACAGACTCC----------CTATTCAGTCC--CTGGAAAAGG-AAAGCCATCAGTTATTAGTAGTCAATGACTGG--TCCATCATCTCTTCTCTGGAG---TGTGGTAGGAGGACTT---ACTGAGTTCT--------------------ATTGTC---------------CTGCTGTTC-------------------------------------------------------------------TCAAAATGTAAAAGACTGAATTGGCCCTACCTTCTCTAGC-------------------------ACCTGGGAGCCCTAAC----TGTGTTCAAGACAGGAAGGACAGAACAATGG---AATCATGAGCCTGGCTTCTGGGCACCTTAGCAAAG-TGAGAAAGGTTTCTTCTGACCCTTTACGTTTAAGTTCCTTGCCTGGATGTCTCCCTTCTTCCTGACCTAACCAGAGAAGCCGCGTGTCTGTAACACAAGAGCCCTTTGACAAACAGAAGGATGTTTCCAGAGGAAGGACCCAAGAGTCCTCTTGAAAATGG-AGTCTCTAAGGCGGCTG---CTGTGCTCTGGAGAGAGAG------CGATCAGCTCTG-------------GAG---GCTTTAAGTTGCCCTCCAGGTTGCAGATCGCCCCATCTCTTCCTAATCATAGAAAGAATTTCTTGTTGGATTTTTTTCAAGTGATTTTCTGGGAGTCATCAAAATGGCTGGGAGTCCTGCTGTAG--------------TTAGGGAGGTCTGTCACAGGAC-------------------TTTGTCAG-----TTGCTAGAACTCTGGAGGAGGAGGTCTCCTGGGTCTGGTCTGCCTGCCTTTGTGTGGTGACTTCTCCCTGACCT-CTCTGTGTGTG-------------------------------------ATCTCTGCCAGACCCGCT-----------AGCGCAG---AGCTCCTTTTCAGTAACTCTTCCCTGACATTGTGCTGAGCCCACTGTTTCCCAGCATTCAGTGGCTCTCTGGTGACCTTAATGGGAAGGGAGCCAGCCTCCGGCAAATCTCTTTTTTTGACAATAGAGAAACATGACTGGGAAGCAGGCAATAAATACAGATCC---------AGGGCAGCAAAGATGGAAACCTGCTGTTTTGTCCAGCTGCATCAAGGCATAGAATCATGCAGGAATCTGTCTTGTCTGATTTGACCTGC----TC-------------------------ATGTTCCTGCATGCATTCTTGCTTTCTCAGCTGCCAGCAGAGGGCTGGAGAGGTTTGTCTGTAATCCATCTAGCCCTTCCTGTCTCTTCAACATACCAC-AGATGACTTCAGGAGTTAACAAGCTGCCATT---AAAGTCATGTCTCACTCAGGATATGTTTGAG-GGTATGGCAAAGAAACACAACCAGGCAGGG-TTTGAACTGTTTAGGAAACAATGTATCCTTT-----ACTGACACTCCAGACTCTTTAATTGACTACATCCTATGTACCAGgtactgtatt---------cagttcagggcagcag
s HiC_scaffold_1 113764936 3239 - 233722169 CTTTTCCTTAACTGCAGAGGGATTTTGTTTCAATTATCTACTTTTGGGTAACAAATT-----------TAGTGGCATAAAACAATAACAGTTATGCATTTGATCACAATTTGGCAATCTGGGCAGGGGTCAGAAGAGGTCTGTTTGTCTCTACCTACATGGCATCAGTTGAAACACGTCATCTGGGCAGAGCGGTCACACCCATGAAGACTGACTCGTGGCTTGCTCCATGCTG--TGTGTGTTCAGCAGTTGCTGTTGGCTATAA----CTTCAGTTCTTCAGCTGGCTTCTCTATGTGGCTTCCTGGGCTTCCTTACAGCATGGTG-CTACATTCGGGGAGGAAGGAAGTGGAAGCTGCCAGCTCTTTTCCAGGTTAGGCCCTCAATTCGAACAATATCACTTCCATT---------------------CCTCAG-CTCAACCTAGAATCAAGGAGG-GGAGAAATGGACCTCACCTCTCAGTTGGAGGAATGACAGAGAATTTGTGACCAGTCGGTCACTACGTCCAAcacaaaatatttctt-ctaaaggacatttttcagtttttaatattttccatgaTACAGTTAAAATATTGTTTCATACTTTTACCAAAATGGCATAtagaat-atatttgaatttttt------aagattttattttaaagagaataaaaccaaacaaaataaaacagaataaaaccaataaaagcaaaacagtgaaagtgatacagaacttcaaaataggacaataggaaatcaacaatggctaccatgatgcctctta-------ctatcttcaaaattgctgtccataccatcagacataataaaatcaaataaaacagaacagaataaaactaatcaaaacagaacactgaataaaacaaaacaataaaacagaagaaaacaaaacagtactggattttgaaaacaagacagaaggaaatcccccttacttTCtacattgcttattgttatcc-tcttaatagatgctca-----------aaCTACCAGCCTTCAGCCttcaaagtcagtcaaacaatacaagcaccaAGTTGCTTTTGTACCTCtttgctgtcaa----ctcagcc---tgtcttcCTAATCAGCCAGGTgcttatgggtgtgtgtgtgtgtatgtgtgtgtgtgtgtattgtgtgtgtttgtgcatgctCGCACAAGTGCATGTGTgttt--------ttgtctcccagcccacacaaCAAT-TGGCTTATGGGAAGGGTGAATTTGCTTTCTCCTCCTGGACCCCACATGGCTTgcactggctcatgggaagggcaaactggctttTT-GTTACTCCtctcctgggccctgcatggcatcatatattccaatttttataaaattagttcCATCCATTTATTCACCTTTCGATTGAGTATATGCATAAGGAAATGTCTGAAATAGTGTTTAACTAATATTAATGGAGTTAAATACTTCAATTAATATGCTATCTTTTCAAAAGTCCTAATTCATTTGGGAC-AGTTTTGAGAAGCATG----------------AAGAGGTTATAGAATATAGaatggcttttaaaaaacaacttgcTTTGtgttctatttccttttcttg-atcTACCATTTCTGCAAAACTAGTGAAGTTACTA--TTTTATTAAAACTTAGAag--------tggaaaa-----ttttcttttagaactgAACACTCACAACATAAATGGATTGAAAGTGGCCCGGGGT-CCACAGAACATCACTTTGTTGTGTGGAGGAAGAAAACAGAGGTCCAGAATGTGGCTTGCTCAGGCCTCTGCGTCCCTCCCACTCTACCCTGCAGGAGGAGGCAGAGTAATCAATTACC--TGGTCAATTACTTGATCCTAGGGCAGCTTCCACAGAGCTGTGTGGTAGGAGGATTGTTAATTGAGTTGTGTGTCACAGGTTTTCCAAAGATTGTTAGTGGAGGGCTGAAGCTGCAGCTCAGTGCTACAATGCTCATCTATCATGGGTGAGGAGCTGGATTCAGTCCTCAGcatcccaaaacaaaaaccaaaatg-agaaGGGTGAACTGACCTGGATTTATCTAGCCTAGGTCTCTATGTATGGCTGTAATACGTGGGGCCAGAAACATGTTGTGTTTGAGATA--AAGAACAGAGGAAGAAGTCAATTACTGGCTTGACTTCTGGGTACCTTCACAGAGATTGGAAAGGTTTTCCTGGAGCCTTTAAATTTAAGGTCCTTTTCTGGATGGCTTGCTAGTGCC------ATCCAGAG-----GTCTCCCTGTAGCCAAAAACCTCTATGATATGCAGAAGAATGTTCCCAGAGGAAGGACT---GAGTCCATTTGCAAATAACAGGCTGTGAGGAGGAAGGTTTTGTCTTCCAAAGAGAAAGAGTAGTTGAGTGGCACTGCTTCACAGGGGGGGAGTCTGTTTTAGATTAGTCTCCATGATGTGAATTACTGCAGCGCCTCC--ATCCCTGAAAGAATCACTTTTCAGATTTTTA-CAAGCAATTTCTGGAGTGTAACCAGAATGGCGGGGA-TCCTGCTTTAGCTGTGGAATCAGTGTTAGAGATGATGATAAGTGGACGTGTGCTTCTGTGGCTTCTCTCACCAGAAGACTTGCTTGA---CCAGGGGACTTGGTCTTCTAGGACTGGCATGGCCTTCCTTCACTTGTGACATCAGTGTGGGCTgctgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcccagtcCCACTCCTTACTGAGGGACACAATGCAGTTCATTCCCACTAAATCTTCCCTTCCATTGTGCTGATGTTACTGTTTCCCAGCCTGCAGTGGCTCCCTGGTGACCTTAATGGGAAAGGAGCCAGCTTCTAGCAAATCT-TGTTTTTGAAGAGGGAGAAATGTGCCCATCAGGTAAGCAATAAATAAAGAGCCAGTGCAGTGAGGGCAGCAAGAAAGAAAACCTGATGTTTTGTCCAGTTGTATCAAGAAATAGACACATGCAGGAATCTGTCTTGTCTGATTTGGTTTGCGATTTCTTTTAGAGGACATTTCTCTGGAGAAATTTTCCTgcttttattcttgctttttcaGCTGCCACAAGAGGGCTGGAAAGatttgtct---------------ctttttgtctcttt------ccatGAGGTTACTTCAGGAGGCAGTACACTGTCTTCTGAAAAGTTGTTTCTCATTTGGAACAATTCTGAGAAGCATGACAAGGAAA-GCAGTTAGGTGGGACTTTAAACAGTCCAGGATAGAACTCATTCTTTTGACAGCCAACACTCCAGATTCTTTAATTGAGCACATTC--TGTAGCAGAAAATCTGCTCCCCTAGCACACTTCAGGTCACCAG

a score=17053
s chr3           103421022 686 + 160039680 GGAAACCGCTCCAAGCACTCAGATCTTAGCT----------------GACCCAAAGGAAAGTCTGCCCGCTATTTAAGGCAACACCCCATTT-----------------------------CCAGGACGCAGACCGCTCCCTGGAGAGATGCCCAC------TCACATCCGAGCTTACAGATCTCGCTGAAAAGCCCTTGCGTGGCTTTCACACAATCAAGATCTCTGTTT-------------------------ATAAAGAAGGAACCATCTTCAGGGCCCACAGACGGCTTCCCCATTTTCCA------CACCACCCTCTGGATTCAATTGCCCTTCTAACCTCATATTTTCCAAGA---------------AACGCAACCCCTGGGAACCCTGGTTCTTTGGAGACCCATCTTGATGCTGTTTGGTCTCTTCATTCAGCTTT--GAGTGGCAGAGACTCACATTGGGTCATTGGAAATGATTTGATTTGTGCCCAGCACGTGGGGGACAGGAAATCATAGAGCCCG----------CAGGGCAGGCAAGCAGCCAA-CCGTGGACCTCGGAAGAATGGAGGTGCTGACCTCCTCCCTGGACCGCAGCCGCCTCGCTGGAAGGAGTTTTAATTATACCCTCGACTTGTATTTGTCTTATAAAAGCACACCATGAATGAAATATTAAAAGGGCACATACTCTTTT-CCAAAAGAATGAGTTTTCCTGCCAGAGTATTTTATTGTAACAATAATCCTGACGAAATC-----AATGTGACACCGGAGCCCCCACCAGGGGAA
s HiC_scaffold_1 113769624 780 - 233722169 GGTAACAATTCCAGGCCCTGCCATCTCAGCTTACCCATTGTCTGCATAACCCAGAAGCGAAGCTGCCAGCCTATTAAGGCAATGCCACACTTTGAGAGTGCAGCATCTTCTGAAAAACTAACAAAGCCACAGACTGCTTCCCAGAGAACTGCATGCAAAGCTTGACGAC--AATTTTTAGACCCCC---AGAAGCCCACGCCTGG---TCACG-GGTTAAAATCACTGCTTTCTGTAGCAGTTGAGGATTTCAAAAGTGAACAAAGAATCCTCCCCAGGGAATGCAGCCAGTT----CTTTTGACAGCAAGGCACCATCCTGTGGTTGCAGTTGTCCTCCCAAACT-AGATTTTCCTGGACTCTTTCTCACTCAGGAAACAACTACAAAGAACACTGCCCTATAGCCCgctgctgctgttgcttcttGGCCTCTGCATTCAGTTTTCTGAGTGGCAGAGTTGCATGTTAGGTTATTTGAAAGGGTTTCATT-GTACACTTCAAGTGATGGACAGGAAATCACTTAGCCCATGGCAACAGCCAGTGTAGATGGCTGGCCAGTCCATG-----CTGAAGGATGCTAAAACTGTCCTC-TCTAAAGACTGAGATGCCTTGGCTATGAGGAGTTTTAATTATAGCACTGAAGTATATTTGTTTTATAGAGg-atatcagaaataaaatattaaaagggcACATACTCTTTTTCCCAGAGAATGAGTTTTCCTGCCAGTGTATTTTATTGGAACAATAATCCTGACAGCATCAATATAATGTAACACTGGAGTCCCTACCAGGGAGA

a score=49110
s chr3           103429321 1063 + 160039680 taaaaaTCCCTCGCC--AGTTCACAAAATGTCCACATGGTGGCGCTA-GATGGGAACCCGGTTGTCCGTCTACTGTGCTTTC--------------CTGCCTCTGGGCCCAGCTGTCTG-------CTGGGCTTTGACTGCTGGGTACCAGATGCATTAGGGTCCT-------------AGTTTCTCAGGCTGTGGCACCTGTGTGAGTCCCTGTTAGACCCTCACTTCCTGCCTCTCTTGAGGCTTTCTCCCTTTCTCCTCCCTTCAGACTCCCAA------AGCCTTCCTGCTTCTCACTCCCAGGCTGGGCTTCTGCCTCTGAGGCTGCCAGCCCACTGCTCCAG-CCAGGAGGAGCTAGAGGAGCATATGGGCTTCGTGGGTCTTTGGATTTCTGAAGTGATATGAATATTGATTTACTACCTTCTCTATATATTGAAAAATAGTCTTCTAAAAACTTTATGGGTGTGTTTCTATGGACCCTTTCCAACTTCAGAAAGCACTGTAATACAATGAAATTTTCTGCCCATATTGTTTCATTTCAAAGTGACATTGAATCAGGCCTGAGTAAATATTTATGATTTCTCTTGAAAGGTGGCAGACTCATGACATGGTAATTAATTTTACTGTAGGCTGAATTCAAAATGGCTTTGGTAATATACGAGTAGGTATGTAAAATGTTTATGGTGCTTTTGAAAGCAAGCCAGGGGCTTTAAATGAATCCTCAGTCAGACAACGAAGGAGGAGCAGGATTGCAATTCTAAGTTTGCTGATAGAATTTCTGTGGGAAACTAGGATTTTTAAAGATTGATATTCATTGC--ACAATC-GCACACATCATATATTTTATGTACTGTTGAAGTATTTGGAAACTTCAAATATACTTACTTTTTAAGAAATGCATGCTTCAAGCAAT-GTTAAAAAAGAAAGGCTAAATTTAGAAAATTGGTGTTGGTTTAGGGCAGAAGCTGAAAGGAACAGAATATTTCCTAGCTTGCAAAGGGC-----------TCTTATCTGAAGTCTCCAGTTGAGGGATATGTCTTTCTCCACCCCTC--CACTTGATTATCATCAGGATCTACACTTTCTGCTTTAAAA-ACGAATTCAgggactg
s HiC_scaffold_1 113781326 1092 - 233722169 TGAGATTTCCTTGCCCGAGGTTACACAATGTCCACCTGGTGGAGATAAGATTTGAACCCAGTGGTCCGG----TGTGTTTTCATGACACACTCTGCCTGTCTCTGGGTTT-GCTGCCTGGGTGAGTTTGGGCTTTAATTTCAGGGTACAGATTGCATTAAAGTCCTGGCTGTCAGCCCAAGATTGTCAGCTGGTGCTGCCTTC------CCCCTCTAGGACGTTACCTCCTGTCACCCTGTAG-------------CTCCTCCCAGTTGTCTCCGCAGTGTGCAGCATTTCTG----TCACCCCCTGGCTTGCCTTCTGTCT-TGCTGCCACCATCCTCGTGGTGCAGTCCAGAGGGAGTTAGAAAAGCATATGGGTTTCATGGGCCTATGAAATTTTGAAGTGATATGAgtattgatttgttttctttcctacaTGTTGAAAA-TGATCTTCTAAAAACTTTATGGGTATATTTACATGGAAATCTGCCAGCTAAAGAATGTGTTGTAACACAAAGAAATTTGCTGCCAATATCGTTCCATTTCAAAGTGACATTGAATCAGGTCTgagtaaatatttatgatttctcTTGAAATGTGACAGACTCATGACATGGTAATTAATTTTACTGTAGGCTGAATTCATAATGGTTTTGGTAATATATGAGTAGGTGTATAAAATGTTTACAGGGCTCTCAAAAATAAGCCCAAGGC-TTACATGAAACTCTAATCagacaagcaaaggaaaataaaattgcaattcTAATTTTGCTGATAGAATTTCTGTGGGAAGCAAGGAGTTTTAGAGACTCATATGCATTGCAGAGAATCAGCACACACCAGATATTTTATGTACTGTTAAACTATTTGGAAACTTCAAATATACTTACTTTTCAAGAAATGCATGCTTTGAGCGATGGTTGAAAAAGAAAGGCTAAATTTAGAAAATTGTCTTTGGTTTAGGGCAAAAGCTGAGAAAAACAGAATACTTTATAAC-TGCAAGAGGCTGCAGGGATAGTTTCATCTGAGGCCTCT-GTTTTTGGATGCTTCTTTCTCTCACCCTCTGTATTTAATCAATGGTAAATTCTACATTTTCTACACTAAAAGATGGACCCAGAATCTG

a score=14469
s chr3           103436150 1586 + 160039680 TAATCTATACTATACAGTTAGCATGATGCAGAGTAAGCTGCACTGTGCCCCTCAGCTCGTGGGAGCTCCTCTTAGTACTGCGTGATTCGCTCAGTTCCAGTCCCCAGCTGAGCAACGGGAGAGCACTCTATGGTGAAAGTAAGCTTGAACTTTGATCA-CACCTATTTAGAGGTGTGGCACCTATCCCCCAGAAAATGACAGAATCCCAGAC-------TCCA----------CCTAAATATGGCTCACACAGATGAGTTTTCAGAGCAAGCA--CT---gctctgtcac-----------tgtcgccctggtctcagacaagtcacttagaccccatagatgtctcttgagcaatgactacctacacagggatgc---------tgagctgtaaggacacaatgtgtgcat-gcatccaggatagtatctggcacttaagggctcacaatagactgtccctctTCTTTTTG--CTTAATAACCATTAAAAATAGTCTTCGATAAAAGGGTaaacattaattgaaccactcccgtgtgccatgtgttgggtagacaTTTTAAAATTTCATGTTG----------------TCTCCCAAATACT-----------------------------------------------------TTATTATGATGTCAAGTAATtgtgt------------------------------gtgtgtgtgtg----------------------------------------------tgtgtgtA----------------------------------ttgaaacagggtcttattatgtagtccagg-tggctcaggactcaatacatagcttaggc---cttcaactgcctccaaa-------cctgctgtagcctccagagtgcttggatgac--tatgtgtcaagattcctagtt-ttaAAAGATATATTAATACTA--ATTTGAGGAGACAAGAGATTTGAAGT----------------------AAGAGAATTTAG--------------------------ACTGCTCCTGGCCTCTGGACT---GACTGGTACACTCTGTCTCTAAAACACGATACCTGGTAT----------------------------------------------TTTCTACCCCTGC-------------------------------------TCCAAATTCCA--TATTGGTCATTAAACCTGACAGCATGAGGAAGTGGCTACTTAGTACT-GATACATAAGCTCGGAGGATAC--TGTGCCCCCAGCTCTGGCTT-GGTGAGGAGATTGTAAGCTTCCCTTCCCCCAGCCCCAG-----------CCAAGATGTCTCCATCACTGCTG---CTTCGGGCTTGCTCTCCTCATCCTGATGTAGTGATGTCCTGGTCGATGTGATTCTCTG--AGGGCAAGGTCAGGGCATGGAACCTT-------------------------------------------------------------------------------------------------------------------------------------GCTGT------------------------------------------TGGGGCTTGAGGCAG-------CAGTTCTCAG--------------------------------GGTTTCACTGACGGGAGGTCGCTTGGCAATCCTAG-CAGTTTTCAGCA-GAAGAGACACA------TAAACCTACATGATGAGTGCTGGCTGTTATGTTTGACCGCTATTTGAAATCGATACTCCTGCACTGGCTGGGTCAGTTACAGCCAGCTGTAATTTATGTCACAGAGGAGCCCCTGGGAGGTACA---------------GGGAAGGAGATAGCCTGGGACTACA------------CAGGTCATTGCTTA--CTTGACACTGTTGTAGGATAGATTCCCCAGA--------------------ATATGCCTTTTTCCT-TCTGACTTTAAAACAGTGCGTGCCAAGTATTATTATTATC-------------TATGAAAG-ATTTATAGGAGAAAATGAAAATCCTGCCCTTCATCCGAAAGCCTGCCTGATGGGTTTCTG--TAAACCCTTCCG-GCTTTGTG-TGTGCATGTGTGTCCTGACCCACATTCACAAATGTTTTGAAAATGAAGCTGTACTTTGTGGGtttattttt
s HiC_scaffold_1 113786046 2228 - 233722169 TAATTTGTGTGATATGTTGAGTCTGATGCATTATCAGCTGC-----------TGAATAGCATGAGCtacttttattat------atatattcagACTCAGAGTCCAGCTGAATAATTGGAGAGAACTTCACAACTGAAGTAAAACAGACCTTTGCTCGGTATCAGTTTAGAAT----GCTCTCCTCTCAGGGAAAATGATGGCATCTCATATGATTTCTTCCATTTTGTACAGCCTAAATATGATTTACAGGAATG-GCTTTGGGAGCAGGCAGACTCGGACTCAAACACCAGCGTTCACATGTTACTATGATCTCAGG-AAGTCGTTAGCCAGCCTTGTGGGCCTCATCTGCAATAGGTATTTACAAACTATTGCAGATAAACTTGAGCTGTGAGGATG--ATGTAAACACAGCATTGGCAGGAGTTTCTGGTACTTAGTGGATTTCAgtatattgtctctttttttttttttcttaatggccATTG----TAGGTCTTGATAGAACAATAAAGATTTATTAAACC-CTACTGTGTGTCATATAGTGGttagatatattttttttcagtactggggattgaacccaggttcttgcacatactaggcaagcatttaccactgatctacatccccagaTCACTGGTtaggaattttattattattatttttattattggtaTCAAGGATTGAACTGATAACCTCGCTGCTTAGTAGGCAAGTGCttaaggcactgagctaaatccctggcctagctagcattttaaaattgtatataatctcttatgttctttaaaatgatttttttttttttgagacagggtttcacaatgtagttcagactagctaCAAATTCACTAAGCAGCCCAAgcaagcctcaaa---ctcacaatgattctcctgcctcagcctcccaagtgctgggattacagggtgtgtTACCATGCCCAGTGATTCCTATGtttattaataatataattttaggGG-TAAGAAAGTTGAAGTTAAAACTTTGTTAAAAGTTAACAGTAAAATTTTGTCCTATTCCTATTTTCCACTTCTTACACTGCCTGGGGTCTCTGGATTAGTGAATAGTAGA---TACCAGGAAAATACcagactagggatatagctcagaggtagtGCTCTTGCCATGCCTAGGCCCCGAGTTCAATTTCCAGccctgcaaaagaaaaagaataaaaggaggaCATTCAGTTGCTCCTCTAGTTCCAAATGTCAGCAATTAAGCTGGA-ACCATCATGAAGTGACTGTTTTGAACTCTCCTTACAATCCTGGAGGACACATCATGATCCCAGCCTAGTCCCAGGCAAGGAGACTGCG-GTTTGTTGTTCCCAAGCCTCATTAGTGGGATTTCCAAGCTATACTTATCTCAGAAGAATCTTCCATCTTCCTCTCCTTCTACCAACCCAGAGGTGGCCTTGTTTATGTGATGCCTTAGTAGGACAGTGCTCGGGCacagaatctttattttttatttaaagagaaaaaaaaaaaaaaacaaagcaataaaagggtacaagtcatacagaatttcaagaaaaaaatatacagttaagaaatcactagttaatagattacatattgtcatcttagaaacagttgtccaaatcacaaaattaaagcatacaaagtgagcatttattaatgagattgcagacagttctgttcaatgatcagaCACAGAATCTTGCAAAATCGGCCTATCCTCAGCTTTCAATGACGGAAATTTTATTGGCGATCTTGGGCAATCTTCATCAAGAAGAGAGATGGAGATGTAAACTTTTGTAATGACTGCTGGCTGTTAAATGTGGCCACTATCTGAAACCAATAATCCTGGACCTGCTGGATGAGTGATGGTCAGCTGTAATTTATGT--CAGAGGGTCCCCTGGGGAGGATGCAGGAAAACAGGTGTGGGAAGGTGATGGCCGCGCACCCCATCACAACGCAGGCAGGTCACTGTCTCTTCCTGGCACTGCTGCAGGATGGGATGCCCAGATTggtatttttcaaacatttaaatacatttttattctctgattttaaaatagtacCTGCATATTATTACTACTTTCAAAAATCAgaagataagaaaatatttaaagaagaaaatgaaagtcatatCCTTCTTTTTACCACCTG-CTGGTAACATTCTGCATAAATTCTTTCatgctttttgaaatatttgtgtacCCCTAGTCCC---CATGGATGTTTTGAAAATGGGACTGTATTTTGTGATTTTATGTTT

a score=52955
s chr3           103447574 2652 + 160039680 ccccctctttctttctttcTGTAATTTTTTTGGGAGCATATCCCATTCATGCTTGGAGTATGAGTGATGTAACATATATAACACACCTGGCATGGTAGGCCTTGGGTAGCAGTAACTGCCCT-CTGCCTTCTGATGCCCCCCAAACATTGCTTTCACTAACTTGCTGGCCTATCTGGACCACACACCCCCCTCCAGAGATGCTGTAGGCATTCTACAGCTGCTGGACAAACTTGTC-TGTAACTAGGTTCTTGGCATTGTTTACCACCAGACTCTCTTAAACTAAAACTGATATGACTTGACCCGGAGGATCAATAATTTTATAGACTGAAGGCTTGGTG---------TGCCTCGGTGAACTGGGTGGTAGGCTTCATGTTA----TTCTCTTTGAAACCATACTGGAAGTGTGGGGACTATTCAATG--------ACACTTTACTTCAC-------TATTAACTCTTTATTCCGACTC--TCAGAGT-GCTGCTGTCCA-CACTCAAGAGTCAT-TCTTGTGCTGTGAACAGTTTCTTCTGACCTTGAAAAAG-GCTGGCCCATTTGCTCAAGGGCAAAAAGATGGCTCCTGGGATGAAAACATGGGAAGGAGGGGGAACCCTGTCTCCATTC--------CTCTTCCTCACAGAACTCCTGGAAGCAAAGAGAAGGTTATTTGAGGATGTAAAGTTATTCCTATGAATCTTTT---CTTTCCTATAAACACTAAAGCTGTCCATTTTCTCAGAAGGGAGCCTGGCTCTTCAGCATA-----GCATCTCTCAGCGTGTCAGCTGCTAATCCTGTTTGAT-GCCAGGTGGCTCTGCACAGGTTCCTATGGCAAGCTGGGGCTTATTTTGTAGACGTTCTAGGTGGTACTGACATCCTATAGCTTTTATAAGGTAATGTTCCTGAAAACCAAAACTTTAAAAAACATCTCCTTTTGACCTTAAGGAGGTTAAAATGGAGACACGTTTGGAGAAACTTCCAGAACTCTGAACTGAGAGGTAGATATGGAATACTACCAG-GCCACTG------------------AGTCTTGCTTCCTAAAGCATTCCAGAT-------CCTTCCTCATTATAGTTCCCCTCTCTGGGGTGCACCACAAA--TTTTAAATTCTTTTTGACAACCTATTATAATACCATGTTTCCTAAAGTAAATCTAACCAAACACAAAGGAGAAAATTCTTAGCTAAGTTTCCTTTAGCTACTTAAGAGAGTATTTGAAACATTGATTTCTAACTGTTTTTGATAGACCACAGCCACCTGATGACTCTCCAAGGTCAGATTTACTGTTAGACAT--------TTTTTTTTTCAATTCAAGGAAGCAAGGTTGAGCCCACACATATCCGTAATGGAAGGCAAGGCAGGGGGATTTATAAACCT-AATTAAAAGGTGCAAATTCTCAAATCCAGACCCATAAACTGGCTTTTAGAGCTCTGGTTGCTGGAGGAGTTGTAAATCAAAGCTGTTTCAGGTGAGAGTTCACCCTCCTGCCCCCGATCAGGTGAGTCCAGCCAGCACTTTAAAAATGGAAAGC----------------TTTCACATACAATAAGAAATACAAGTGTAATTGGAATTATATGACTACATATAAATCAAGATTTATGAAAAATCTGTCCAAGAAACTATAGACTTTAAGACCCAGTAGCAGAAatatatatatatatatatatatatatatatatatatatatgtataGAGAGAGAGAGAATAACCATGGGATGGTTTCGCTAATAAATCACAAAGTACTCAAGACAGTCTCTGTAATTTAAAATGTGTTGGGTTTTGGAATTATCAAAAAGGAAACTGGGGGAAAATGGATCATAAGGGTGGTCTGCCAGGATTGGGCGCAGTCTACACGAGGCTACAGTGAAGTTG-TTTCCCTGTGATTTTACTGAAGGACTGTTTTT----AATTGAGAGCCAGTTAGTATGCCCTGGTATTGGTCCGGTTTTATTTT-CCCTCATCCTGGGCTTTTCAGAGGACATAACA-TGGACGTTTAATCATATTAACAACATAAACCATAATGAGTCCCCCCCCACCACACACACACCAAGTGCCACAAGGTGTGGGCAGCTGGGTGTCCTGCAAGCCCCGTAAAGG--------GGGCAGCTCTAAAGACTGGGGCATGCAGCTCTTGGCTTGTAACACAGGAATCCCCACCGG----CAGTTAGATTGTCCTGCTATGTGGTTGCATCC--CACACTGGGCTGGGGGGATTtgtgtgtgtatgtgtgtgtgtgtgagagagagagagagagagagagagagagagagaga-------gagagagagagagagagagaggagagagagaggag----agagagagagagagaggagagagagaC--------------------TTGAAGAGGTGTAGGTAGGGGGTCAGAAGTAGGAAAACTAAGTAGGCAAA-----AGAAGACAGAAAAGCTTTCCAGAGGACCCTGGAATGGCTGGGACTGTCAGAAAGGCAATGAGATCGCCGGCACACCGCAAATGTCTTCAGCTGGTCTCCTTCAGGGTTGAGTGA--CTCTGCCAGAGGGAGGAAGGATGACCAAGGGAAGCTAATGGTCT-CCTGTTACCAGCTGCAAACTTAATGCTGTATGC-TTTCTCTAAATATTTGACATGTGCCTCGTGAGCAGGGAATAATGATCAGGTCAGAATTACTCACTTGCTACCGAGGAAGTGGAAGATTTTGATGCTGCGTGCGAGCTTGAACC-AGTCTGTGATGCAGTCTG
s HiC_scaffold_1 113798845 2545 - 233722169 cctctcATTTCTCCCATTTGCCCATTTTGTTTAGAGTGAGTCACACT-GTGCTGAGATTGGGGGTGTTATA----------TATGCCTGATATAGTAGGTCTTCAATGACAGCAgctaccccacccccaccccattccCTTGAAACACACTCTTCATTCATTCAATGGCTACGCTGAGCCGCATGACTCAC-CCTGGGATCCAGTGTGCACCGCATAGCTACTGTCCTGAGTTTTCATGAACCCAGCATCCTGGCATCAGTTACCAGCACTCTCTCT-AAGCTAAAACCAATATGACATGACTTGGAGGATCAATAATTT--------ATAGGCTTTGTGGTTCAATCCTGGCTTGTAGACCTGAGTGATAGGCATTATGTGGAACTTTCTCTTTGAAATCTTAATGGAAATTTGGGGGGGATTCAGTGTTCCCTTTGCATTTTGTAACACAAAACCTGACTAACTCTTTTGTACAACTAAACCTGAGTCATTGCTGCTCAGCTCCGAAGAATCACCTCTGGTTTTGTGAACGGT-------GACCGTGGAAGAGCTTTGGGCCATTCGA--GAGGGAGAAAATGTGGCTAGCAGAAGGGCAGTGTGG-----AGACGCAGCTCTGTCCTCAAGTTAGGCCAGCTCTTCTT--------TCTTGGAGACAAATACAAATTCTTTTTGGGAT-TAAAGTTCTTactgtgattttctttctcttctatatAAGCACTAAAACCACTCATTTTCTCAGAAGAAAGCTTGTCTGTTATGCACACTCCAGCAT------GTATGTTTGCTGCTAATCCATTTGTACAGCTGCGTGACTTTGCAGAGGTTCACATGACAGATCAAGGGAC-TTTCATGGAAGTTCTAGGCGGTCCTAGTGACCCATAACTTCTTGAAGGAATTGTTTtccaaaagtgaaattttaaataa--tcatctTCTGGCCTTTGCGAA---AAAATGGAGA------------AACTGGCCGAACTC--AGCTGAGTTATCGGTAAGGTATAGCATCAGCATCACTTTCATCTTCTATAATCCTCAGTTTCTTCTCTTAgtatttttaagttgtttttctatttcttagtattttttctctttctcttgggcATTGAAAAGGTTTAAAAACTCTTTTGACAGCCAGTTATA---TAATACTTTCTAAAGAAAATGTAGCctaatgt---gaaaaaaatcattaactgAGCTTCTTTTATTCATATTAGAGAGTATTTGGAACATTGATCTCTGACT----CTGATAGATCATGGCCACCTTATAACTCTCCAAGGATGGATTTACTGCTAGTCAAAGACGTGATATATTGTGCACTTCCATACAGGAAGGTTAGGTCCACACATAGCTGTAATGGAAAATGAGGTAGGGGGATTTATATACCTtaattaaaaggagaaaa--ctcAAATCCAAATCCATAAATTGACTTTTAGAATTCTGATTGCTAAAAGAGTTGCAAATCAAAGCAATCTGAGATGAGAGTTCATTTT----TCCTGAATCAGGTGAGGCCAGCCAACTCATTAACAATTGAAAGCTTCAACTCAATATTAATTTcacttacaataa-aaatataaaagtgacctGAATGATATGATT--ATATAAATC-AGATTTATG-AAAATCTGGTAAAGTAACTGTAGATGCTAAGAACCAGTGGCAG--------------------------------------ATATCGCTTGAAAAAGGAA-------TTTGGAAAAG--TAGATATTAGATCACAAACAAGTttaga----------aattcaaa------------ttcaaattacCTAA-------------------------------------------------TGTTATCCATGT-AGGCCATAGTAAGTTCGTTTTCCCTATGATTCTGTTGAAA---TGTTTCTACAGAATTAATAGCCAGTTAATATGTCCTTACATT------ACTTCATCTTACTATAATTCTAGGCATTTTGGAGgatataaaatttgatttttaatcacATCAGCAACCAAAATTGTAatgggatttttttcttcatttctctaaaATGTGTCTTGGACTGTGGATACCTTAATATCTTGGGAGCAGCCTGAGGGCCAGGCTTGTGCAGCT---GAGCCATGGGTATCCAACTCTAGCTTCCCAGAGCAGGCTCCTCGACCTGGGATCAACCGAACTGT-----------GCAGGACCCAGCACCTTTGGCCCTTAGCATTCCTG-----------------GCCGGAG-----------GAAAGCCACGGAGCGGGCTACCTCTCTGTAAGTGTTAGAAACTCTAAGCACAGTTTTGGGATTTTCATATTCAGATCTTCAGACCacagtctcatttttttttgttttttactttgtagAGATGTAGAAA----TTCAGTGGCACAAAAATTAAATAGGCAAAAATACAGAACACGGGAAAGATTTCTAGAGAGCCTCTAAATTTCTTTG-TTGCAAGAAAGA-AATACAGTCCTCACCATGCGGTAAA-GTCTTCAGCTGCTCTCCTTCAAGGATGAATGATTCTCTGCCAGAGGGAAGAAGGGTGACTATAGGGAGTTAATGGCCTCCCTATTATCAGCTGTAAACTTAACACTATGTttgtttctataaatatttgaCATGTGAGTAGTGAGCAGGGAATAATGATCAGGCCCCAGTTACTCATCTGTTACTTTGCAAGGAGGGG---CTGATAC----AGTCAGCTTGCATCAAGTCTGTGTTACAGCCTG

a score=59099
s chr3           103464498 2546 + 160039680 tcttcagtatctaaaactatgcctggcacataataggccctgac-aagaaaGAGGTTAATGAGAAAACGAGAAACCACAAAGGAAAAAAATACATAATTTACATACTACGCAGTTACATTAGCTAT--TGCTGTAAACTGATTGTCTCAGCCACAACGCTGTGGT--TGTTCCAAGTTTTCCCTCTCTTTATCCTTTCTTTAACTCTGCTATGCAAATAACAAAGTTGATGGGTACCTGCCTAACCTTATCCTTTGCCATTTTCTGTTATTCTATTATTATTACAGCAAGTCCCAGACCAAG---TCCTGTCCTTTTcttgctcccctcccccattatttaaacattgctaccaggg--ttttgaaatcactaatctgattgtgtcaaccccctgtttaaaattcttcactggctccaggactctgtcaggataaagtttacagcctcacTC--AGTACACACCTCCCTTCCTGAGACTGCCTTCTGACCCCTTCCCGCCTCTTCTGCCGAGAGTCATCTTTATACCCGTAGTTCCCACCAGACAGGGTCGCTGGAGATCTGAGGAGGAGTGAGCT--ATTTAACTGCcctcactttttcatatgcagtccctgcc-------ttgaccttttctctctttctgctc---aagactctagtaatcacactc-ctttgcacatctcatctccagcatgtcaggctctaggagttcctcctgacccctcagtctcaggtagataatgctttctgtctatgg-cccgtctccgcccttgatagtctggca---gggttgatagtttgctcatctgcttccctgaccagtggacacaaacctgaaagtagagctgctgctgctgccacgccgccctttgacctctatgcctggcatcgaaatgagagcctggaaatgtttgctgagtaagtgaCAGTTGTGTGAACAAGCCATCCTCA--TCTTGAAGCTGTCTGGTCT--CAGAGGAGACGCAGGCTGGAAGCCAGGCAGTGAGACACCCAGACAAGGGGCTCTAAAGCTGGACTTACCCTGGGGTTAGCATGTGATCACTGCAGATGGCATGTGAAGGGGCTGACCGATGGACTGCCACAGTGCTGATTGGGGAAAGACCCTGCACTCTGCATGCCTGGCCTGGAAAA-ATATTATTTCTGACATTTTCCTTGTGTCTGT----------------------CCCTGTTGGC---CCTCAGTAGTTCACAAAATCTAATGAAAGAAACCAAAAACCCCAGACTGCCTTAGATGTTCT--------TTAGG--------TTTGGCTCTGTGACTGAGCCAG--TGTTAAAAGGTAGCACGTCCCTCCTGGTGATGGTAGCAAGGAGCTTTACCAGGGAGAGACAGAAACATCTCAGACATGCT---GCCTTGGGTGGCTGTGGACTCCCTCTGGTTTGCCCTCTTCACACTCCTATTAACAGAGTTTGTGTTGTCTAGAACAACAAGATTGC---CCTCCATGCCTTCACCAAACTGAAGGTAAAACTTACAGTGTGAAGTCCTCTC-TCTAACAAATTCTTTCTTCAGCTAAAGACTC-AAAGCTTTTTACACTTTCGGTTAC-AGAGAGATCTCCACTCCGCACAGGTGCTTGCTTCTGAAATGCTTGAAAGTG-GAGATTTTCTG-TTGGCTCTTCAGACATAGTGAGGCATTCTAATTGGTGGGCCAGGCTGGAGTG-GGTGAGGGGGGCAGGTAGAGAATGAAGGGGGATGGGAAATCTCTTCTCCTCAGGCTCAGCACAAAGACACAACCACAGTGA-TACATAAACACAGTGCTCATTTGTGAGGACTTCCTGCCTTTGAAATCAGCTGCTGTGTGGGAAAGGGACAAATATTTAAGCAACAGTTGGAGTGTTTGTAATTACAACTCCCACTGATGAATAGAAGATGCTAAAAAGACGGCAGAGGACCATTTGGCTCAGAGTGGAGTGTTAAGACTGTGGTAATAGAAAGCAATCTGTTCAAGGAGAGGTCTGGGAGGGCACGGAAAACAAAAACAAAA-CAAGCAAGCAAAATGGGTAAGTGATGGAGAGAGGCAAGAATAGCAACCTTATAATCA-CTGTGAAAACGTCAACATTGCTAAATCTTGAA--ATGTATGTGGGATGTTGAAGATGAAGGAGAGGGCTGTCAGGAT-----------AGGACGGGCAAAGGGAAGTTGCT--ATGAGAGGAACAAGCAGCAAAAAAATAACACATACTGGAAACGTTAACAGACACTCACCTGCCGTTTGCTTTA-GTGGGTATAGACTGCATCCATCTATATAGCTTCTTTCCTTCAAAAATGCCAGCC--TCTCATAAATATTCATCCCCACGTAGCTAGGAGAGAGTGattttaggcttataaaattttactgccagaccatcgaggtctgctcttccaactgctaccacttacaaaggtggatatagaggtcccagagatgtgacttg-tgaatgtcacaTTCCTAGAGAGAATAGCCTGAC-TCCCTTCCAGTG-ACAT----TGGCATCAG------------------GAAGACACACTTTCACATG---AAACATATTGAAAACTCTTCCTTGAT-GAAGCCACGCTTTCCATACCCACTGATGGAATCAATTATATTCAGTGATACCAAAAGG
s HiC_scaffold_1 113850347 2547 - 233722169 TCCCCAGTATTTAAAACTGTCCCTGGAA-ATATTAAGCTCTTTCTAAGAgatgattaaatgaaaaaatgaaagcaagcaaAGCAGCATAATG--TAGTGTAAGTACTG---AGTTAAGGTATCTGTGTTACCGTTAACTTATTGATTCAGCTACAAAATT-TGGTGATGTTCA------TGCTCCTACTTGTAGATAGTCACAGTATTCTATGGCATCACCTTAGTTTATAG------------TCTCATCATCTTCTACCTG------------GATTATTGTCACAAGTTCCAAAGtaaaatttccttttctcctcct--ttctgtttcttcttgtaaAAACATTGCTGGCAAGAGTTTTTGAAATCACAAA-CTGATCATGTCAATATC-TGCTTAAAATTCTTCACTGATTCCCCAGACCTGTCAGGATGAAGTTTACACTCTTTCTCTTAGGGCACACATCCTATCCTGGTCCTGTCCTCTGATCCCTTCTGGCCT-GACTCCTGAGATTCTTCCCCATAGCTTCTGCACCAAGCAGACAGGGCCACTTGAGGTTCTCCAATGAGTAACTCTGATTTATGCGTCCATGCTTTTGCATATGCAGTCTCTGCCACCtacagtgaccttctttttcctccctttctataAAATCTCCCCAATCGTATTCACCTTTCACATCTCGTCTCAAATGTGACAGACTCTAGAAGTTCTTCCTGACCTGTCACTCTGATTTAGATAATACTTTCTGTGCATGTTCCCATCATAGTACTT-ACAATCCTGCAATGGAACTGATAG----CTGCTCTGCTTCCCCCAGCAGTGAACGCACATAGAGAGGTATCTCTTTGGGTAGCATCACACTGTACTTTGACTCCCTGGGCTAGTGCACAAATGAGCGGTT-----TGCTTCCGGGCTGAATGA-GGTTGTA-GAGTGATACCTGCTAACTTTTTGAGGCTGCCTTACCTGGAAGAAGAGAGGCAGATTGGTAGCTGGGAAACAAGACAGCCATACAAGGAGCAAAAAGCTTGAGCTTCTCTTGGGGCCTGTGAATTACCACTTCCAGCAG--GGCGAAGGCCAGGCTCTATAAG-----GCAGCAATGATGGGAGAAACACACTGCGCTTTGTACTCTTGGCTTGTaaactattttgtgtgtgtgtctgtgtgtgtgtgtgtgtatgtgcacgtgCATGTGTATCCCTTTTTGTTATCCTTAGTGTTTAAGAAAGTCTAATGGAA---------AATCCCAGCCTGCCTTAGCCGTTctaaaataatttaggaaaaacaATTTGGACACACGGTTAAGCCAGAGTATTAGAGGATAACTCGTCCTTCCTGGGAATGGCAACCAGGCTCTTTTCCAAGTGGAGAGA-----ATTTCAAGTGTTCTCTCACTTTGGAGGGCTTTAAACTTCCCTTGGAcagtctctttctcctctttattaata-attttgtgcc--taaaaataaaaaaattattttcttctatgctttTACCAAACAGAATGTGAAATTTCC-TTGTGCTATGCTCTCCTCCTACAGCTTCT--CCTTGACTAAAAACTccaaagccttttgtattttcttttatgaaagaaACTGTCCCTTCTCACAGATGCTTAGT----AGATACTTGGAAGGAAGAGGCTTTGTGATTGGTTGTCCAGACACAGAGCAGCATTCTGATTGGTGAAGAAG-----AGCGTGGTgaggggtggaggaggagaaggcgTTTTGACCAGAA---------CCCCAGGC----------------ATTGTGGTGAGCTCGAAAGTGCATCTTGCAACTGTGAGGAACTCATTCTTCTGAAAAAAGCTGTTGTA--GAAAAGGGGCAAATATTGAAGCAACAGTTGGGGCGTATGTAATTACAACTCCCACTACTAAATATAAGATGGTAAAAGGGCGACAGAGGACAGTTTGGCCCAGAAC--AGTATTAAGACTATTATAATA-AAAGCAATTTGTTCCAGGAGAGGTCCTGGAGGgcttggaaaacaaaaataaaaccaggcaAGTGGAATGGATAAATAATGGAGAGAGGCAATTACAGTCATTTTATAAAGAGCCAAGAGAATTATAACATTAATAAATCCTGAAAGATATACACAGGGTGTTGAA-ATGAAGGAGGGGTCT-TCAGAACAGTCAGTGACAAGAATGGTTGAAGTGAAGTTGTTAGAGGAGACGTTCAAGTGGC-AAAAAataagatattctagaaaaactaacaaatattGAC-------TTGTTTTATGTGAGGCTAGAGCACATT--TTTCTATAGtttctttcatataaaaataccatccaTTCTTATAAATATTCATCTTCACGTAGCTAAGACAGAGTGATTTTAGACTTATAAAATTTTAGTGATAGGGCTTAGAGGTCAG---TTCTGACTGCCATCATCAACAGACAAGGACGCTAAGTTCTAGGGAGCTTGAGCTGCTCAGCTTCATATTCCC--AGTGGATATCCTCACTTCCCTTCCAGTGTACTTTCTATGCCATCAGAAGTTTCCAACTTTCTAAGAAGAACCTCCCTTCTAAGGCCAAGTATGTTGAACAGGCTCATATGATCAAAGCTGTGCTTTAAGCAGccatttaaacaa-aaatgaaatttagtaATGATAAAAAG

a score=27758
s chr3           103471120 1627 + 160039680 ACTGCTTGCTTTAATCTAATATTTCCTAGTTCTTTATGTCTAGGGCTCAAGAGAGGTAATATTTTTTTGCCAGAAAATGACATC-----------ACTGTGGGAAAAAAATA--------GATATGGCCAGGATCTAGACAAACGTAACTTTAACAGTCAGAAAGCTAACTAAACATTAAACTCAGTTAATCCATTTACCAAGCCAGGCATGGCCCTTTGAGACAGTCATCGAACAATCCCGACTCGAAAAGTCATGAGACACTTTGAAAGTCATTTTATGGCTGCGTGTAAGAAAGAGGCCACAGTTTCATAGTCTGCGTTTTCAGAATTTATAAGTTTTCATTTTAGAGAATTAAAATTGTATATACGTAGCAAAATGGCAGTCCTTAAAATTTCAAGCAGAACCTT-ACAAATGTCACGCCTGGCTGAATTTATTTGTTCTCCAGGGAGAAACTTTCTTCCACGGAGGAAGGTTTAATCCGTGAAACTGGCTGCTGCAGCTCCTGTTAGAAGATGCCATTTTCTTCTTAATATGATGAAATGATTGAACACATTTTGTGGAATTTGGCAATTTCTCCTGTGGAAGATGATATTTTTT--------CTCTGTAGTTACTGAAAAATTATAGGtatgtgtgtgtatgtgtgtgtatatatgtgtgtgtgtatatatatatatatatatatatatatttatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtatatatatatatgtgtgtgtgtgtgtatatatATATATATGACAATATCCACAAAAGCAAGTGCATTATCTCCAATAATTGGTTAATTTGAGGAGGCTCAGCTGGCCTGCTTCCCTGGAAATTGCAGGAAAATT-AGACTGGACCATCCAGAAAAGCTGGCAAGGTGAGAAGCCTTGTTATTTCTGAAGGCCTCTGGTACATTGTATTCAAGGTCGATAGCGAGGTGAGGGGAAGTTTGTTGACAAATCACTGTT-------------AACGGTAACTGTCGGGA-GAAAGACAACGTCTGTAAGCAGAGGCTGGCAC---------------------AGAAATGTATCATAATAGAAACAAATGGGTGTTAATAA----GTGGTCTGGGACAGGTGATGTGCTATGAACAGGGCCATTAGACAACCTGGTCAGGATGTCAGAGTGATGACAACAGAAAATATTTCAAATCTCTCCCCATTGTCTCAAAGAAGGGA-------------TGTTGTGG--GAGAGTTTGCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------CGTttctgggagtgtct---gtga-------------------------------------------------------------------------------------------------------------------------ggttgt---------------tttaggtgaggttagcacttaaaccctcagactaggattaaacaacttgtgctccgtcgtcggggtggacctcctccaatcagt--------tgactagaaaacagtggt----ggccctcaaccaaattaaagagaatcctttctgtttgTAA--GGCTACTGACCATATTTTTACTtttccccttccagatcttatttgggaggggggtgttcttagcttcacagatctgggtcatatacagaatgacagctgcaaagaatctgggaaatgtag-tcttagttcttcagctgagaagttcaggaagactctgtagcaggCCACTGGGCAGGGCTTGCGTGC-----CCACATCACCACGTCGTGACTCTGTTGCCTCCTGCCT------ATGGTAGGAAACGTGTGTGAGCTTCCTGT
s HiC_scaffold_1 113854667 1823 - 233722169 ATTACATACTTGTATTTAATATTTCCCATTTCTCTGGGTCTACAGTGTGAGGGGGACA-------CCTGCTAGAAAAGGACATATATGTCCTGGGACAGTGATGAACATATATGTCCTGGGATGTGGCTGGGATCCACAGAAGTTGAACTTTGGTGGT-AGAGAGTGTA-TACATGCTAACTGTAGTTA-----TTTACTAAACCAGGAGTGGTCCTTTGAAACAGTTATTCAAAA--CCTGTGTTTAAAAAGCAAGAAGCACTGCAAAAGTAGCTGTGCCCTTGTATGTGAGAAACAGGCCATGGGTTTGTAGCTTGAAATCTCAAAGTCTGTAAGTTT-CATTTTAGAGAATTAAAACTGTGTATGTGTAGCAAAA-----GTGACTAACATTTCAAGCAGGGCTTTGAAAAATCTCATACCTATGTGAGTTTATTAACTCTCCAGGGAGAAGAGATCT-----GTGAAAAGTGTTAATCTGTGAAAATGGCTG-TACAG-TAATGGTAAAAGATAG-ATTTTCTACTTAATTTGACCAAATGATTGAACA-AGCTTATGGAAC--GGCAAATTTTCCTgtggaaattgtttttttttttttttttctttttattcaccgAAAA----CAGGGAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------ACATATGGTAACATCCAAAAAACCAAATGTATTTTTTGCAAGAATTGGTTAATTTCAGGAGTCTCAGACAGTA-ATTTGCCtggaaattacttaaaaattgaGGATGATCCATACCAAAAAGACCTGAGAGACAAAAGCCTCATCATTTCTGAAAGCCTCTGATGAACCATATCTCAGGTTTATAGTGAGA-GGGAGGAAATATGTTAACACATTGATATTTTCAGATGACACCAACACTAACTGTCTGGATGAATGGCAAGATTCATAAGGAAAGATTAGTGCTCTAATGACAGACTCCCAAGCAGAAATGTATCATAACAGGGACAAATTGGCATTAATAGCATTAGAGTCTAGGGTGGGTGCTGCACGATAAATAGGGCTATTACAAAGTCTGCTCAGGATGTCAGACTGGTGAGGAGAGAAAGTATTTCTAGTCTTTCCATGTTGTACTAAAGAAGGGAACAGGTCTGAGGGTACTCTGGAAAAGAATTTGCATATTTCTCTCATAACCTGAGTTCTCAAACTTTGTGAGTCTGACATGCACTCTGCAGAACAATAGACTTTGCCACCATCTTGCCTGTCCTCAGCATGAGGGCTGCTAGCCATATGAAGGCTTTGGTGTTACCTGCAAAGAGGTGCCCCATACAATGAGGTCCATTCCTGTCAGTAGCTACAGTGAGACCCTCCTTTCTATTCTCTTTAAGAACCATACAAGTCATTGAGGGTCATTGAGGGTCACTTTCTAGGACAGTTAATTTTACAACTTCACTGCAAGACTCTCACAATACCACACATAGTCTGGTTGTTTCTCTAAGGCTGAGTTTAGATGAGAGTAACATTTAAGTCCTTAGACTGAG-----GCAATTTGTCCTTCCTAATAAAGATGGGCCTTATTCAGTCAGTCAAAGATCTGGgcagaaaaaaaagatttactgtCTTACTCTAAATAAGAGAGAAT-CTTCCTATTTGCACATGGCCACAGGCTGCATTGTTTACCTTGGCCTTCCAAGCTTCATGTGGTG---------TCTTGGATTGGAAGACCAGGATAATATGTAGAATACCAACTATATAAGATTTGGGAAATGTAACTTTTAGTTCCTTAGTTCTTTAGTTCAGGAAGGCACTTTAAGAG-----TGGACAATGAATGCCTGAGTCAGTAGCATCATTGTGTCACAACACTATTGCCTTCCACACCCATGGATGGCAGATGATGTGTGTGAGATTCCTAT

a score=7880
s chr3           103475749 497 + 160039680 TACTTACAAGTTTGTTTTTTTGCCAA------GCTTTATCAAGGTGCT---------------ATGCAACAGCTAAATCTTTTAAGCCACTTTTCATTCTTCATGACTGGTATAACCT-----------GATTTTCAACAACC-ATATTTGGAGGTCAAATCGGTGAAGTTAAA--GGCCTAAGAGAAGAGCCAATATTTTGGTCCTACCCT---AAGAACAGCACAGTTCTAAAGGATGAAGAGA----TTTCTCCAAAGAGGGAGTCGGAGTTCACAACTCTGACAAGTCACTTGTCCTCAAGATCAGCGAGGCTATGGGGACCCAGTGGTTGGACACTGACCAGTATACAATTTTCAAAGAAGGAGCACCACCACAGAGGGAAATGTCCCCAATGCTTACACAGAAAGCCACATA--TGAACAAGACCCCAACTCATCCCAGCAGATGATACAACTGGCAGAGAAAAATTAAAGAAGCCAAGGGACTCTTCTGAAGTCCCTAAAAATAACCTTTAAGGACCCTCACTTGACCTTAGTA
s HiC_scaffold_1 219186569 499 - 233722169 tacataaaaataagtttttttgcTCATACTATGTATTTCCAAGGTGCTTGATATCCAGGGAAAGTGTGATAGTTAAACCT--------AATGCTCCTACTACAACACTGGTGTGACTGACTATCTCttagatgttcaacaactgaggctTAGAGATCAAAGCTAAAAAAGACAACTGAGCTAAGACGAGAGTCAATAGTT-GGTCCTGGCCTTCCAAGGTCAACAAGGATCCAGGACAC-AAGAGAATCTTTTCTGCAA-----------GATTGTACAACTGTTGTGAGTCACCCAATCTCCTGAGCAGGGAGATTGTTGGACCCCAGAGGACAGGCATAAACCAGTGTACAATGTGCTAAAAGAAAAGGTCCCCAGAGAGAGAAATGTCAACCATAGTTCCATGGAAATTCACATGGTCAATCAAGACCATGACCTTTACCAGCAGCCAACATTAATGG---------------------ACTGAGTTCTCTACATGGTTCCAAAAGTAATCCTTAAAGAGTCTTAACTGAACTTGATA

a score=52685
s chr3           103479660 1727 + 160039680 GGAGGTCCTCACCAGATGTAGCCCCTC--CTTAAACAAAAACCAAGTGCCAAGATAAATCACTTTTCTTTGTCACATACCCTCTCTATTGTACTGAGTTATTAGCGACAGGAAATGGGTCATAGCATGCATTTAAACCAGTGA----TAATACCAATTCACCTCCCAAAGTAATAAAATCATTCAATTTATTTGCATTAATAGAGTGTGAAATATCTACTTCTGTTCACCATCATCAGttccaaaattattttaatggctatattatg-----------------tcataggttatttaatgaggtctcattattgaacgtgtaggttattttctttctccctgc-tatcataaataagaccacagtgaacaccctggcagagacagcttttcacacattcctgtttatttcctaagggcaaattcctggaagtagaatttctcagtcacatgctttggccattttgaaggctttgaaatatacaatactgaattattcctcagaataagttgtTTAATATTATGATTAAATGCCAAATGAAAAACTttatggaaa-tttgaaatatggataagacaacagagactatg--tcacccaccccccaaatataactgtcacttagattcaattatgatcaatttatagccaaagtgtttctcctacacctcccccatttGGCTGAGTTGTGTTGAACGGGATCCAAGGTGTCATAGATATTTTCAATATTTCTCTTGAACAGCAGAATATTCTGAACA---ACAAAAGCTCCCATTTCAGAGAGGCCT----GGTGA-AATCACTTGAACTGAGTAATTT---GAGATTACATCCCAGGTTACCTG---AGTCAGGGGAG-----AGCCACACCCTGGTGTAAACAGACCAGTGGGAAGCCATGGTATAGTGGTTTCTTCCCTGTCCCATGGAAGCCAATGGCCCTACAGGAAAAGAACATTGAAACTTCACT---CCTGAGGGTTCGCAGGGCTTTTTCTGAGCCTCTGTATTCCCCAGATGCACGCCATCCTTCGTCTATATTAAGCAGAAGTAGATAATGCAGCCCGTTTGCGGCTCCTGTGTGTGTAAATATTGTGATTCCGGTGTACAGTGATGGCTGCCGAGCAACAGGCTTCTCTTTGACTTCTGCTTACAATCTCCTGGCTGACTGAATTTTGTGACAGTAGCTGATGTGGCGTAGCATCAACAAGCCAGCGCAGTCTTGGGATGGGAATGCAAGTGATTTCCTTTCTCAATCAAGTATTGTTGGTAAGTACAATGCTGGCTCTCTGCCTTCCTGGCTCTCCAGGAGTTTTGCAAAGGACTGTACCAAGGAGCAAACTGCA-TGATGGCAGAGGTATGGTCCTGAGGGGAAGTGGGAGTTAATTTTGAGGCCCAAATCAGCCAATTAGCAGATAACGAGCAGGAGGAGATCTGTCTTGTAGACCAGAATGGTAAGTGGACAGCTGGTGAATACTTGAAGTTGATTTCCAAATGTCAAATTCAAAAT-----------TTCACTGTAGTCACTCCCAAGGCACTGCAGGAGTTCCGGGGGTCACGCAGCATTGCTTTAAATAACACACAGGACAATGTCTGTATCATCCGGGTGCCGAAGGG-------------CTGAGGCAAACAGGGCTGGGTT----------------ACAATCT----------CAACTCTGGTCAAGTTACTTGTCCATTCATTCACTGATTC-------CATGAAAACGCTGAGGATACATAGCTGCTGCACCAGACACCTTGTCTGGCGCT---GACTCCATGACAAGCAAGGCATTGTTTCTGTCGTTAAGG
s HiC_scaffold_1 113861355 1735 - 233722169 GAAGACCATCATTAGATGCAGCCCGCCAGCTTCAATGCAAAG-AAGAACCCAAATGAAGTCTCTTTTTTTGTAAATCATCCATTTTGTGATCTTATGTTATTAACAACAGAAATTGCATCATGACTTCTGTTTCAAACAGTGACGGATATTACTGATTCATCTTCCAAAG-----AAATCA--------GTTTCCACCAGTAGTGCATACAATGACCATCAGTCCTCACTAACACCAGTCCTAAAATTACTGTAATGACTACATAATAGTCCATTCTAATAAATTTCATATCTTATTTATTCAATCCTCAtt---gaacatttaggttgtttccttttt---tgcatATTATAAATAAGGATGGGATGAACATCCTGGTAGATAAATCTTTTCACACATTCATGATTATTTCCtatggataaattcctagaagtaGAATTTCTGAGTCATAGGTTTTGCACATTTTAAAGACTTTTGGATATATAATACCAAATTATCTctcagaa-aaattatttcatatttggcTCAAATACAAcatttaa---tttatgaaaaacttcaaaaatatataaaggaacaaagtttaaaaattatccCCCC-----ATGTAGCCATCAATCAGATTCAGTAACGGTCAACTTATGGTCAAACTGTTGCATCTAAAACTTCTCCATTTGgctaaaatgttttgaatcagatCCAAAGAGAC-----CATTTTCA---TTT-------------GAGTATTCAGAAGACATGTGAAAGGTTCCTATTCAGGAGGGTCTTCAAAGTGAGAATGACTTGAA-------ATTTCATGTGTTCACACCCTAAGTCCTCTGCCCAGTGGGGGGGGGATGGAGTTGCACAGAGGTGCACAGGGCTGTGAGGGAATCCTCAGTGT----GTTCATTCTGCACCTTGTGGGAGCCAGGGATCCTGTGGGAA-------TTATTAGTCCACTGATTTTGAGGGCTTTCAGAGCTTTTTGTGAGTCTCTGTATTCCCCAACTCCTTGCCATTCTTTGTCTAAATAAAGCAGAGGTAGATCCTGTAATCCATCTGTGACTCGTGTAAATGTAAATATTGTGATTTGTGTTTATAGTGATTGCTGCAGAATGAGAGG-TTTGCCGTGGTTTCTGCTTAAAATTTCCAGGCTGATTGACTTTTGTAATACTTGTTG--GTAGCACTGCATCAACAACTCAGCACAATCTTAAGACAGAAATGCAAGCAATTTTCTTTCACAA-------------GACAGTACAGTAATAG-TCAGTTTCTTTCTAGCTCTTTAGACATGTTATATAGGACTGTG-CAGGAAGCAAACTGCACTTAGAGCTGAGGTATTGCTCTGAAGAGAA---GGAAGTAACTAGAAGACCTAAGTCAGTC----ATCAGATAAAGATTAGGAAAAGATCCATCTTCTGGACCAGAATAGTAAGTGGCTGAATGATGAATACTCAAAGTTGATTTCAAAATGTCAGATTCAGAATATTTTTGAGAGTTCACTGCAGTTATTTCCACAATACTGTATTAACTCTGGAGGTCATCCAGCCTGGCTTTAAATAATTCACATGATGATGT-TGTGTCATTATGATG-TGAAGGAAACGTCACGGGCTTTGAGGCAAACAGGACTGGTTTGAATCTCAAGTCTATCATAATCTGCTTGTAGAGCAACTTTGAGTGAGTTacttgttcatttgttcattcattcactcactcaacAAAATGATCAATTTCTGTAG-------GCCAGATGTTGTGCCTAGCACTAAGGACTAAATGGTGAGCAGGACATGGTTTCTGTCCGTAAGG

a score=33905
s chr3           103483283 1138 + 160039680 TTATCTGTGCCCCCCAAAATGGAAATAGGCTGT--------------------------CCGTAGTGTTTAGGCTTTTCCCAACCAAGCAAGATT-----------------------------TCAGGGATGATTCTTAAAGCCACATCTTGCTTCATGAAACATCAGAGAGAAATCTGGTCAGGAAACTCCAGAAAATAATTTCTCAGCCATCTGTCTTCCCCTGAATGGCAGCCAGAGATCGCTCACCAAGTCATGTGTGGCAGCTCAGTTGGAAAGAGACCCAAGCCAAGGTGCCAGGGTAGC---TGTGCTCTGTTTGGTGATGGCAGCT-GCTGGCAGGCTGCT-CCTGGGTCAGGGGGAACAGATGACTTAAGGACAAGAAAATGGGCTCCCCAAACCTTCCCAGTTATTCAATGATTGAACTTCAC-TTCCATCTGACAAGG----------CTGATTCACTGGCCAAGCCCTGACTGGGGTGTGTGTGTGAGGGGTGGATGGTGGTGGTGCGGGGAGATGGGTAGAGACTGGGCGGGGCAGGGCGGGGGGTGGCAGACTCTACTTATGCCAATTT--AGTATGGTCATAGTTAGAAAG-AAATGGGAGCTGGTTACCTAGAATAGTATCTTCCCCAGTTCTCT------------GAGATTCTTTTATGCCCAGGTGCCCCTAGGCTTGGAAGCAGG-----ACAAGATCCTCAAAGGATCTGTTGAAAGCTGGCTGGCCTTCGA--------TCAATGATCTGTGTGAGCTTTCAAGGGGGAAGCAGGGAGAGGAAAGCAGGACAGACAGGCACTGCTCTCCAGGAGAGGCAAGGTGTTTGCACTTG--AGGGAGAGCCCTCTGACCTCCTTCCCACCTTCCAGGTGCGGCACCCCTG-----------------------ACTGGAGCT-------------GAGCAGGCAGGCAGCCTCCTCCTCTTCCCTGGAGTCCTTTCTCACCAGGAGGTATCATGGAACAATTGTGACTGAGTTAGAGCCTAGCTGTTGCCAGAGTCCTCATGTCCTCTAACCACTCCCATTTAACTGCACAGAACAAGGATTTTTGTCACCAGGaaaagggaacaaacagacaaaaaaaaaaaaacgaagccaacaaacaagaagaaaaaaaaataataagaaaaGCTCATAGGTCTCTTCTCTACCTGCCACCTTCCCCTCATCAGCTTGTAGCTCTAGAGGGTGGAGGG-CTGAAGCAGATAGGATTGTATTCATG
s HiC_scaffold_1 113864041 1147 - 233722169 TTACCTAGGccccagaaaatgaaaacaggctGCTTAAAATGCAAGTTCTGACCCAAATCCCATAGTGTTTGGACTCTTCTACACCAAGCAGGATTGAAGTCAGTGGCTGTGGCTGCCTGCCACTCCAAGGATGAATCTTAAAGCCATGGTTTGTTTCATGATGCATTGGAGAGAAATCTGGTCAGGAAACTCCAGAAAATCATTTCTCAGCCATCTGTCTTCCCCTGAATGGCAGCCAGAGATCGCTCACCAAGTCGTGTATGGCAGCTCAGTTGGAAAGGAACTGGAACTGAAGTGCCAGGG-GGCTTGTGTGCTGTGTTTGGTGATGGCAGCTGGCTGGCAGGCTGCTCCCTGGGTCAGCAGGACCAGATTATCCAAGGACAGGAAAATTAGCT-CCCGAAGCTTTCCAGATATTT-GTGATCAGAATTAACTTTCTATCTGACAAAATGTGCCTGTTCTGAACCCACAGCCAAGCCCTGACT------------------------------------------------------------------CCAGGTAATGGCAGATTCTACtaatgtattttttcagtttagtACTAGTCTGAGAGAAAATGAGAACAGGTTACCTAGAATAAACTCATTCCCAGTGCTGCAGGAGCCTTGAGGAGATTCTATTATGCCCGGCTGCCCTGGGGCCTCAAAACAGGAGCTAACTGGCTCTTACTTAGTTCTGCTGAAAACAGGCTGGCCCTAAAAGACTGATTCAGTAAGCTGT----GCTTGCAAGtgagtaa-aaggaaagaaa---agaacaaacaggTGGTGCCCTGCAGGAGAGGCAGaatgtttgtttttgtaaggAAAACCTTTCTGAGTTCCTCCCCACCACCCAGGTGGAGCATTGCTGATTACCCTCTCAGCATAGCACACATTGGGGATTTAGAATGTCATGGAGCAGGCTGGCAGCCTCCATTTATCACACAGGATCATTTTTCACTGATTTGCACCAAAAGGTAATTTTGACTGAATTAGAACCTGGTTATTGCCAGTTTTCCCATAACTTCCATCTGTCTCCATTTAGATTTATGGAA-GTGGTATTTTGTcact-------------------------------------------------ggaagagaaagaaatcaggggTTTCATAGATAGATCTCTTCTCTATCAATC-CCTTCTAGACAT-GGGTTGCATTTCTAGATGGAAGAGGACCTGAAATCCAtggatttatttttatg

a score=16286
s chr3           103489307 741 + 160039680 CTAAAGCTCTGGATAAACGCAGGAAATGGATTTGCTTTCTGGGCTGGAGAAAAGCGCCTCCTTACCAGAAAGTTCTATGACATGAAATCCATCTGTCTACCTGATCCTGAATCGAAGTGGAAATGGTTTTCGCAGACTCCAGGATGTGTTTGATTATTGTGCATCTGACTCTGGTGGAAGGGGAAATGTGGTTCCCAGGGAACAG--AGAGGAGCTCAGACACA---------GAGACACTCCCAGCTCTTCCATGCCTCGCT-GGGCTAGGTTGGGTTCTGAAAGGCAAAGCCAGCGCACCATGGCCCAGTTCGATGCCCCCTGTGCAGCATCTTCTCACAGTTCTAGTTCATGAAGTAGGA---------------AAACGGTTCGTCCA--ATCACGGGGAGCCTCGGTGCTAGGGGCCACGCCAACCAAAGCTGGGATTGGGAGGCAGGGGAGAG-----------------GGTCACTTCCAGGATGT-GGAGACCAGAAAAGGAAGTGTGGTCAGACCTAT------TGCAGATTGTGTAGTGAGGAA------------TTTTGT-----CTTGTCTTCTCATG---GCCACTCTTTTTCGTTA---------TCATCTCTGCTTAGTCATCTTTCATA------AAAAATAGTC-----------------------------------------------------------------TGTATGTCTCAATTCAAACTCT--------------TGGTTGGCCCAGGGTGTTTTATGGATGGCTC--CAGGAAGATCCAGTCA--CCCTCGCTCCCTCAGTCACAGTCACGGGACAGATGGGACACTGGGC-TGTCGGGCTGCCAGCTATGGGTGGAGCTTCTGTGGTCCCATAGAGTATGTTT
s HiC_scaffold_1 113869391 879 - 233722169 CTGCAGCATTAGATAAATATAGGAAACAGATTTGTGTTCTAAGCTACAGAAA-GCTCTTTGTCACCAATAAATCCTATGAAATGAAATCCATCGATCT----GATCCTAAATCCCATTTCAAGTGATTTTCAGGGAATTGATTGTATGTTTGATTACTGTGCATCTTACTTTAAGTGAAGGGAAAATGTAGTTaccaaggaaaaggaggaaaaggctGGACTCAAATGTGAAGGAGACATTCCCAGCT-TCCCAAGCTGTGCTGGGGGTGGCTCTGGTTCTGAAAGGC----CCAA----------------TCAAAACCCTTGGTGGGTCTCCCTCTCACTGCTCTAACTCACAAAGAAACACAAACCACAGGGCACAAATGGTCCACCTAGGGTTGAAGGGAAC-------CCAGAGGAAGCATTACTCAAAGACGGTTGTGGGGTGAAGGGGCGTGAGTGTTGGAGAATCACTGGCCACCTCAAGGGTGCAGGAGAACAGAAAAGGGGACACAGCCAAACCCTTGGGGTCTGCAG-CAGTAAAGTCAAGAGCCCCCTCTGTATCTTTGTAGTTACTTCTCTTctcctgcttttctctctctctcttcaaatCCCCAGTTTTCTCTGCTTAGTCAACTTTCATGTGACCCCAAAATAGTCACTTCTACCATTTTGTCAGCCTGAGTTTTTGGTTCCTAGATTCTCATCACTCTGCCAACATCCTTTGTGTCTCTCAATTTTGATTCTTGAAAAACAGGAGCTGATTGGCCCAGAATATTCTATGGATGGCCCTGCTTCTAGATCAAGTGATCTCCTTGCTCCCTCAGTCCCAAGCAAGAGACAGATGGGTCACAAGGTATATAGGGCTACAGGCTGTGAATAAGGCTCCTATGGTCAATTACAGAATGCTT

a score=41373
s chr3           103495866 1531 + 160039680 ttctgatcacatgg------ttttcaggcatgaactttgcaagtgacaaggttgtatgggaatatccaaaggttctaca-tgtctgCTAGCAGACTGTTTg-caaagctgtggtgttcaataacttagcagtatt--------ttcacctttggactcttctaacctat-gatgggtttattgga-actcaagtctactgtaaaccttgaaacatctgTCCTTTTTAAAATCCTGCTGTTTTGTCTAGATAA--------TTTGAAAGGCATGCTACGTGTAT--------------AGACTGAGCTTCCC-GGTTAGTATGTGTAGAGAGCCAGAGCAGTGTCTTCTTGTTAGCTCTGGAGCTGCT----------GCTGTGGAACCTGTTTAAGAACCACAGATGCTGCGTATGCATAGCTGAAAAGAAGAAACACAGAGTCCTTGAATGCTTTTGTAGAGATGAGTGTGCCAGGCAGCTGGTTCTGCTGAGGAG---CCCAGTGTGCTGAATGAAAAATAAGACAGGTTTGAAACATCTGCGGATTCATAGCTCTGCAGCACCAGTGGAGGACCTAGGGTTAGCACTCCATCCGTGTCTGAGTGGGTACTGTTAAAGGCCACGTGGCTCTACTGTGTGCATAGTTCTTATTCAGTTGGGGCTGGAGGAATCATCTTGACCAGCTCCCCTAAGAGTGCCTCATGTCCAGGTTAGG--GTTTGTAAGCAAGACCGTGATCATTGTTTTTGGGAGTCCACGGTGTGTCACTGGCCACTTGCCTATGA-GTGGGCTGGACCTGGGTCAGAGCACAGACCCGACATGA-GCCACCAAGATGAAGCAGCTTAGGGAACCCAGAGATGAGAGGGAGAATTCCAACTTAGCATCATGGTTCTTTTTCTCT-----TTTATA-AAAAGATCAATCTCATGTCTAATTCATTTGAAAATTCTCCACTTCTCTGTGTGTGTTTTTGGTAAAAATAGAAGTCTCTGAGGATTGCAGGTTCCTGCTGAATTTTATGAGCAACTTCTCAAAGCCTGGTAACCAGGTTCTTCTAATCTTGCCTTGAGTGAATTAAGCACCAGTGGGAGGCTTGCTTTCCGGATGACTGGTTTGAATAAAAGACTTTCAGC-TCTGGTGTAGGAGGCTTTTAAGGTCACCCAATCAACCTGCAGGCCAGAGAAAAGCACAACAAAGACAGCGGACAAGTTGG---------GCTCTGGTCCCCGT-------------TCCTATCCTT---GTCTCTTCTATCCCATCCCTG-CAATTCTCTGCTCCCAGCCATCACCATCTCTGCAACAAATTCCCAGTGTGCCTCCTTG--------CCCTCTGGAAG--------AGCTTGTTAGAAGACAAATAGGATTG-AGTTCCCCCTGGTTATGAGCTTTGGTGCTTCTCTGGTTCCAGACA-TCCCATAGTGCTTGAAgttatatttaaagggtttggtgacagaga---aggtcaagagaagacctttcagggggctgaggatgttccccagcataccttaggtggtagctacatgtgtattcactttgtgagaacttctgtagctagctgtacctctggggtgcgcacgtttctg--agtgcatgttgtactgctat
s HiC_scaffold_1 113876281 1528 - 233722169 TTCTGATCACTGGGAACCAGTTCCCAGGCA------------ATCACAGGTCTGCAGGGGAA------ACCACTCTACAGTGTC----------CTGTGTGACACAGCTGTGATGCTCAGTGACTTAGCTGTATTATGAGCATTTTGACTTTGCATGCTTTCAGTTTATAGACAtatttattggggaaaaaaatccatcaTAAGTTAAGAGGCATCTGAAATTCCTAAA---CCACACTATGACCAAGAAAAAGATGTTTCCTGCAAGGAGTGCCATGTGAATCACATCTGGGGCAAAAGCTGAGTTCCCCTAGCTGAAATGAATAAGGGTTCAGTGTATAGTCTGCTCAGTGGCTTGTGGGCTACTCCATGGCATTGCTCAGAGCACTGTTGAACAACCACAGAGCTTGCTTATGTGAAGCT-CTAAGAGGAAACA--GAGTCCAGGTGTG---------AGAAGCATGTGGCCAAC--CAGGGCCTGCTGAGGAAGATCATAGGTTGATGACTGCAGAACCAGATGGGGTT-----AGCTGGGGGTGCA--------------CTGTGGAT-------------CACCCCAGCCCTCTCTGAATGCGTCCCATTG--------------TTACAGTGTACATTGTTCTTA---GGCTGGG--TTGGGGTGTCATTTTTGCTTCCTCCTATAGAATGGAAGCAAGGCTCAGTTGGGCTGGTTGTGAACGGAACTATGTTCATTATCTT-GAGAGACTTCAACACGTCTCCCAGCACCAGCCTCTGCTGTGGGCCGTGCAGGGTTTAGAGCAGAGCTCAGGCCTGAAGCCACCAAGATGAGGCAGTTTGGGGACATTGGGGATGGGAGGGGGAGCTCGAACTCAGCatcac--ttccttttctctctctttttgtataAAAGATCAATCTCATGTCTAATTCATTTGAAAATTCTCcacttctctgtgtgtgtttttggtAAAAATAGAAGTCTCTGAGGATTGCAGGCTCCTGCTAAATTTTATGAGCAACTTTTCAAAGCTTAGTAACCAGGTTCCTCTAATCTTTCCTTGAGTGAATTAAGTAACAGTGGGAGGCTTGCTTTCTGGATGACTGGTTCGAATAAAAGACTTTCAGAGTTGGGGGTAGGAGGCTTTTAAGGTCATTTAATCAATCTTCAGGCCtcagaaaa-catgattaaaagagTGGAGAAGTAGGTCTTGTCCTGCTCTTGTCCCTGTCCCCCCACCTCCACCCTGTCCCTCCcatttttcctgtcctttctctgtttcttttctgatcCCAGCCATTTCCATCTCTACGAGAAACTTCCAGTTTACCTCCCTGCCTCTTCTCCTCTTAGAAGCCATCAATAGCTTTTCAAAAGGCAAATGAGATtgtatttcctctctgtttaaaaCTGTGTTGCTTTTCTG--TTAAAACACTTCCATGGTGTTAGATAT--TACCTATGGGGCGTGGGGATGGGGACATGGGTGAGGAGGAG---TTCTAGGGGCCTGA-AATGTTTCATTTGTTA-CTTGTTTGATGATAATGTGTGTAGTCATATTGTGATAATT--------AAGCTGTGCCACTGCAAtgtgtattgttttgtttatacaTGTTGTACTTTTAT

a score=32905
s chr3           103497549 1771 + 160039680 CTGTCTGATCAATGGTGTCATGGAACTTCAGAGCGCTGGGATACCGGCAGTTGCAAGAGACCTTTAGAATCCATTACAAAAAGTTATGGTTTAGGGCTAAAGATGGAGAATTAATCCTGGCCCAATCCCTGTCCTAGAAGGGATTTGTTTCGGATGAAGGTTGATTATGTGTAAGCAGGCTGTGGCTCTTAGCAGGAGTGTGGGCAGGCTGTGGCTCTTAGCAGGAGTGTGGGCATGCTTGCAAAGCTTGCCTGAAATCTGCAATCAGGGCAACTAGGTAGGCAGGAGGCCACAGGACATTGGACTAAAGCCAGCCCTTCCTTCAGAGATAAGCTGGGACAATGTCCTTGAGAAATGACCTTCATGGCTGAGCCAATACAGGGACTCTGGAGGA----------------------------------GCTGAGACACAAGGTTGAAGAAAGGATTTGTGTTCAGGAAGTTGCCG-GGAATAGGCAGAGAGAAAATGGCTCTCAGCGCCAACTGAGTCACCAACTTG-CCTAGTTTTTGCAATCACCAGAC---CTATTTATCTGGCTTTTAGCAGGGGAAGTGCTCTTCGCAGcaggtatggtgacacaagcttagaatacccgcagttggggggctgaaacagcaggactgtcacaagttcgaggtcaAGATTCTGTCTTAAGAACAGACAAACCTACTCAACAGCCACACTCTCCATTTAATACTTTGTAAATTGAATTTTGTAAATGGACATTTACAGACTGTTGAGTTGA---CCTTGCTGGGGGTCTTTCTCACTTTGATGTCCG---TCCCCGCTTGCAACACTGTATTCCA----------CCAGTACAATCCTGGGACCTTGCCAATATATGTAGGACAACCAGAGGTGTCCAG---------------GCCCTGACGCTCCATAACCACTtggc-----ttagtccactttctgctactataacctggtatcaaagactggataatttacaaagaaaagaaaatgtacttctcacagagtcaaaggctggggaggccaagagga-agtgcccgtgctggacaagggttttggaactgcctccagcttactgt----agggaaaacatacctgctagagacagtcttctacgctccctcgccagcaacccactccttctg-----aaactggcccagtgcctatggtggcatgaacccagccatgaagaaaatcccttgtgagcct-ttcacctcttaaaggccctgacgcccaatactgctatactgataattaggtctcatcttgagtaatgaaggggacatgcacaCCCTAGGACTCCCTGGGGATTGGGTCTCCTCCTCCACAAGGCT-aggcttagagggg--ttagcccaagcacatagctcatcagcagtaggacag-ggttaaaacctttgaagtatctgtctctactgtccctgctctg-actcct-cgcagt-ctgAGT----TCAGCACTTTGTCCTTAGGGCTTCCTGC--TGAGCATTCCCAGGGGTTGCTATC--TTTTATTCAG----------------------AGGAACTTAATTGTCCCAACAATGTAGT------------GTGCAAGCGACCCTGGGGTCTGGCCTCTAACAGTG--GTTGGTCATATCCCTAGCCATGTGGCATCCTCACGGCATGCATTAATTGCATGGAAATGTCTGTAGCTGTTTGCACATAGCAGCTTCT-TGGTGGCCTTCTCTTTTTAGGATTTAGAACTTCCTCATTGCTGTTGATGTGGGTGACTATAAATACAAATACACAGATAGGATGATGCTCTTGATTGGAAACTGCAGAAAA-----ACCCTATCCCCGGGATCTAAAAAGCAAGAGGGAATGTTATACCCTCAATAAGAAATCCTGAG
s HiC_scaffold_1 113878857 1721 - 233722169 ctgtTTGATAAGTGGTGCCATGAAACTACAGAGTGCTAGGATAATGATGACTTAAAGAAGCCTCTAGAATCCATTACAGGATGTTATAGTTTGGGACTGAGTATGGAGAATCAATCTTGGCCTGGTTCCCATCCAAGAAAGACTGTGTTTCAGATGAAAGTTGATTACGCACAAGCTTAGTGCAGATCCT------AGTGTG--------GTTGCTCTCAG---------------------GGAGCTGGCCTGAAATCTGTGATCAAGACTACCACAGGGACAGAAGGTCTCTGCTCCTGGGGAAAATGCCAGGCCTTCCTT-GTAGACAGGCTGAGAAACTTTCCTAGAGAAG-GAC--------CTGGACTGGTAAAGGACCCTTGGAGGAAGATGGAAGGCTCTGGTTCTCCCCAGCTGGAGGTGTTGAGACATTAGGGTAAAGAAACAATTGGTGTGCAGTGAGTTGTGGAGGAACAGGAAGGGAGGAAATAGCTCCCCTTGACAACTGAGTCACCAGCTTGATAAAGCTACTGCAGTCATTGGACTTTCTGCTTGT-TGCGTTTTAG-GGGAGAAACACTCTTTGC----TGTATGGATATA---------------------------------------------------------------------------------------------------------TCTCTATTTAGTACTTTGCACATTACCTT---------GACATTTACTGTTTCATAAGTTGGTCTTCTTACAGGGCGTCTTGCTTGACTTGATTATAGAAATCTCCCTTTATAACATTATGTTCAATTCTCAGTGCCTAGTACTTTGTAGGGACTTGGTGAGTATTGGCAGAACAAGCATAGGTGCCAATCGTAAGAAGAATGACTCACTGACACTTCTCAAACATCTTGTCCTCACTTgtctgttttctgctgctatTATGGAATAGCACCAACTAGGTGATTTATGAaggaaa-caaatttattttccacagttctggaggctgggaagtccaagagcaCAATGCCGGCATCTGGCAAGGGCCTCCGTACTG---CCAGTGTA-TGTGGCGAGGGCAAGTGAGCCTGCCAGAGAAGGAAGCGGAGTTAGCCAAGTCAGGAACCCAGTCCTGTGATAAGCAATCCTCTCCAGTG---ATAACAGGATTAATCCCTTCATGAGGGGAGACTCTTCAAGACCTAACCAACTCTTCACAGCTCCATCTCCCAATATTGTGATATTGGTAATTAAATTTCAACCTGAGTTTTGGAAGAGATGTTCAAACTATCGCTTATCTTGAGAAGCAGCACTTGTGTCCCAGAAAACTGAGGATCAGAGAGGCTTTACTCAAAGCACACAGCTCATCAGTGGTACAACTGTAGTTTAAACC-TCAAAATGACTGCCACGAAAGCCCTTTCCTTGCATTTCTGTACAGTGCTGAGCCTCATCTACACTTTCCTGTTAGCTATTCCTCCATTGAACTCTTCTAGAGGTTACTACCCTTTTTATTCAGAATAAAATCATCCTTGTACCAAAGGATCCCAAATATCCTAAAGACTAGATTTCTCAGCAAAAGAACAAGTGTCTCTGAGACTTGGATTTTGCCTATACTTTTAGTCCCATCTCTAGCTACCTGGCACCCTAACTTGATGCTTTAATCATGCTGAAATACCTGTGGCTGATTGTTTATATAAGCTTCCACCATGAGTTCCTCTTTCTAGAA-TTATAACTGTCCCATTGCTATTGGGatagataattataaatat--ataaataaacattatCATGGTTTGGGTT-ACAGCAGCAGAAAATCTACTCCCACTCCCAGTGGTGTAAGCAAC---------------ATCTTACATAAGAAATCCTGag

a score=24156
s chr3           103499789 2068 + 160039680 agagagagaggaagagagagaagagagagaaatcctgagggaagagag-----GCTG----CCAGAGCAGGGCCTTGCTTGGCTCT--------GTGGTCTCA--GCTCAGCGTCTGTCTGCTGGCTCCATTTCCTCAGGCAGTAA-CAGAAAAGTGGTGCTTGTTGCAGACCTCACATCCAGACACAGCAAC---CTGCA---------------AGGTTCCTTCCCTGTGCCTC--TTCCCAGAACCTGCCAGCCTTTCCCC---TGGTGCAGTGT----GGGCTAATCACAGACCCACCCTGAATCAGGGGGAAT--------GCATTAGTCCCTGGGTTAGCTAAG-------CCAAGGGTGGAAGGTTGGGCCTTGCCAGGGAAGAT--GAGCACCCAAAAGTGGGTTTCTGTCTATAAGGAAGGGCTCAGGATTGGAGTGGATCTTCTTTCATTTTTGtaattaattaattaattaattaattGGTTGATCCCttttgagacagggtttcttgtgccaaggctgcctttctttgacctcctgatcctcttgccttcattatgtgagtgctaggattTCCTGTCTCATCCAGTTCTGGAGTGGATCTTAACTGACATCCAGTCCCCCCTGGCTAAGGAAGGTTTCTCCAGCTCTCATCTTTAACCTCTTCACACCTCCAATTCTCACCTCTGCAACCTCTCTCCCCCATCGCCTTTCTGCACAGTAGCCCTTTGTGTTTGCAAGGCATACTGGTCCCTCTTGCACATAGTGTCCA---CACAGGGTTCGCCAACCCATTTATCCTGGGGTGCTGCTTA-CCCAGAAGGCTTGTGTTTCCTTTCTAACC-----------------------------------------CACCCTGCTGCAACCACTTCCCTTTTCCTCTAGCCATCTAGCCTCACAGCAGGCAGTTATTTGTTGGTGCTCTGCTTGCAA--ACTTTCCAAACTCCTAAGTCATCCCTCCTGCATTTTATAGACGTGTTTCCCGAGCAGTATAGCAGTGTCTCCttt------tttttttttttttttttttGACAACTCCAGGAAGGAGATCCCCACACACATACCCCCATGTCTTCTGAGTTCCCCAACTACACTTGGATGGTAGATAGCCAGG-TGTCCTCAGCCGTGCCTCTCAC------------AGCTCTGCTTG----GAGAGATGGCAGCTGCTTCTGTGTGTG--------------TGAAGCATTTGCAGGGCCAGAAAACCCTGGGCATAACTGGTCTTTGGAGTCAGTGTGTCATACTTCTGGACTAATTTAAATGCTATCATGGACAAACCAGGCCTGCCTGCCACACTGCTAGGATACAACAGAAGGAAA---GAACTCAGCGCACAGC---------------------------------------------------GAGACTGCTTCCTCCATTGATCCAGCACCTGCTGC--------------CGTGGAAGGGAGTCCACACATCCACAAGACTCAGCTGCAGCCGCA-CCTGCAATTCTCTCTCCCAAATTTTCTTC-----TCTCTCCCCTCCTGTTTCCACTGAGCTTGTGCAAACCCTTTGTTACTGCCTTAGCCCAACATAAAAGATTTCCTTActggttggcctgcctgactctactaaggtatgcgttccttcagggacacagtgtgtctttc-----tggatcactgagtcatgtgaggacagttccatgcctgttgggcagtaggagcttaataagtctctgttgacttaaATTGCATTAATTATTGCTTAGGATAGCAGAAAGCATGATTCTGAAAACATGAAGATGTAACTTAATAAAAACGATGATTTTTACACAG---GATCTGTCC------------------TGAGCAGAGAACGGG----------AAGAGACAGAGTGGCTGTTGACAAGGACCGCCCGTATGAAAATGAACtgttttggttttgagagaaggtcctgttctgtagcccagaccggtcttgaacttgttgtataggctaaactgactttggattggtggtggtcttcttgccatcctccaactgctgacattccaagcaagtgttcccaTCATCTGCCATGCCAGATAAAATCCCCTGTGCAGTGCTGGGATCACTCCAGGACGAGAAGAAGATGGAGCAGGTTGTGCCTGGGGCTGGATTCTAAGCACTGACT--AGGGAAGATTGTAA-----GGAACCTAAAGTGGATAAGGGAGGACTGCAGTAAGGGACTTGTCACCTGTGTATATTTAATCATTTTGCCCTGG
s HiC_scaffold_1 113880579 1991 - 233722169 aaagagagaggaagggaaggaaagtag--------TGGGGGGGGGGTGCCAGTGCTGAGCTCCAGTAAAGGGCCT--CCTGGTTCTTCTCTTCTATGACCTCTttgctctccctccctctcttgctTTCAT--CCTCAGGCTGGAGGCAACAGGGTTGTGGTAGTTGCAGGTCTCATGTTCAACCATATCAACTTCCTGTACAGGAAGAAGATGATATGTTTTGtcactgtttttcctttcccagaacTTTCCAGCATACACCCATGTAGTTCATTGGCCAAGACCTGGTTACAGATTCACCCTAATCCAAGGGAAATTGTTTCCCAGATTAGTT--TAAGTTAGTCAGGTTATGTCCCAGGAGTTGGGGGTTAGATCATACTGGGGAGAGTTGGGGTACCTAAAAGAGGGAGACTGTTGACAAGCAAGATTTCAAGATTGGAGTGTAT---------------------------------------------------------------------------------------TTTGA-----------------------------------ATGGTTTCCTGTCCAAT---------------ATTT------------------------CTAAGGAAAATCTCTCCTGCTCCTAT-GTTAACCTTCTCACAAGCCCATTTCTCACCCCTCCAGTCGCTTTTCCT-ACTGCTTTTCGGCACAGGGGCCCT----GTTCACA--------TAGTTGCATTTATTCA--GTGCCCCTCCCACCTGCTTTGCTGATTCGCTTACCTTGCTGTGCTGCTTAGCACAGCA---TTGTGCCTTCCCTCCAACCAGTCTGCATGCAGCTTCTCTTGGAGGTGCATCCAAATGAACCTTCCTACCTCAGTCACTCCCCTCATTCTGCAACCCTCTAGCCTGG-------------------AGTGCATTCCATGGGATGACCTTAC------TGAGGTCACTTCTC--ACGTTTGAGAGGTatgtttttctctcaaaaatGTGG-GTTTCTTATCAATAGTGATATCTTCTAACTCTTTAGtagcaacaggaaaaaaa-------aaaaccacttctaTGTCTTCTGTCCTCCACAGTcaccagggcagggcaggcaacCAGGGTGTCATTAGCTTTGCTTCTTGCTCTCGTCCTCGAACCTCTGCTTGTAGAGAGAGAtgacagccacaactacaaataaaAGATTGCTGAAAGAAAGAGCTCCCAGGGCTAGAAAATCCAAGGGACAGCTATTATTTGGAGCTAGAATGTTATGGCTGTAGGAATATTTACGTTCTACCCTGGACAAACCAG----GTACATCACACTGCTAAGATacatcagaaggaaacaggaaCCCAAAGAGCACCTATTACTATATGTCAAATTCTAGTTCTCTGTGTTAGTTGGTCATCCCTATAAATTGTGCATTTTCCAGGGCTGTGTTATCTGCTGTCCTCCTCTCCTGTGCCTGGGAGGGTTTTAAATGCCCTACCTGACTCTGCTCTGCCAGCACCCTGGTGAACTTTCACCTGAATCCCCAACAAAAAGCTCATTTCTCCCtcttctgttgttattttgcaaTCCCTTTGCTGCTGCTTTATCCCAATATAAGAGAATTCCTTACCCAT----CTGCCTACCTTTGCTGCTGTATGAACTCCTTAAGAGACGCAATCCCCCTCTCCACCTTGGATTCTTGGGTGCCGTGAGGACGGATCTATGCCTTTCAGGTAATAGGAACTTAATAAATCTTtgatgaattaaattaaattaattattgctTAGGATAGCAGAAAATAAGA-TCTGAAAAACTGAATACAGATCATAATAAATACAGTGACTTCTCAACAGGTAGTTCTTTCCTTTATTATGACTTGTAgataaagaaagaatgagaaaaagagaaaagaaatagattgat-----aCAGCTTCTCTCCCTCTAGAAATGAACC-------TCTTAAAAGGAGGAACAGTTGTATAGTC------------------------------------ACTCC---------GTGGCCT------------------------ACCCCAGGAA-------CCAGGGTATGGGAGGTGATCTATAAACACTtgttgaa---------------agaatga-aagaagatgagtcattttgtattttgagttgaATTCTGAGCCCTTTCTTCAGGTGGGCATGAAAATCCTGAAATCTAAGGTGGGTTAGGATGGCCTCCAGTGAAGGAATCTTCTCCTTTGCCCGTTCATCCATTTTGCCCAGG

a score=32026
s chr3           103503910 1323 + 160039680 AGTTCTAGTGTATAATAAATACCCCTATGGTTTCTAATGTAA--GAACAGTAT--CTCTCATGCACACCGTTTCTAGATAagtggctcccaactggggaaggcattgttgctctccatgagaatgtattaatgtttgagtgatgaacgcaacttgcttttgatatgtagcagatagagacccaggaatgctgggaaa-gtcataggtcaacatggatcagctccataacaaagaactaactggtccagaatgtcaatagtgctgaggctggaaa---cTGGTCTcacacacacacacacac-------------------------acacacacaGAGCCTAAACTCCTTCATACTGCAAAATGT-------------------------TTCAGAATCATAGTTg----------gagcaagaaaatagatctgc--catccattatgttatgtgagactctgttgcatgcatg------------gtaggagccaatatgttaattagtt-----gtctttttcctaagtgttcctgccag-tcagtcacctcctgctccccaactaacacatattctgaaataagatctgcctccagtattggcagcgcacaac-cataactctcgacatttagatgcaggcactttttgtttcaag------gacacaagacgctgagaaacaccattctgggacctgaatgatgtcatttcctagaaagcatgttcaaggtgacat--catgctgcatcaggcttgagtagcaggtcctgagggatggggctacccatgctctccctcctaaactagagtttatgacttgtaaatgggac-tgtaggtg--------caactccccagacagga------tcttctctccgggcaaaggt--gatacCAAGAGATGTGTCCCAGTATCCATCTTGGATCCCAAGCAGAA-CTCCAGAGAGCAGGAAAGCTGTTAACACCAGATCGAGAGCACTTTCCCCAGACTCCTGCGGAACAGCATGCTGTTTGGCTGCCAAAATATTAGGACTAAAAGCGGCTGGCAAAGC-TGCTCATTGGGGAGGTGAAGCTGCACAGAGGAGCCTGAGGAAAAACTTCATCTTTGAATACGGCTTTGACTATGACTATGGACGGAACCTCAC-CATGGGTCTTCTTCTGGATAGCCTCACTCTCAGATAAAAGGGATCCTGACCCCAGCTATCCCAAGGATGCTTCTGAGGCAAGTGTGCACTGACTGCAGGTCCTTGAAGGCATGGTGAACCTAAGGTAACTCTGTCTCTGTCCTAAAGACATCCATACCCTAATAGTAAGCTAATTATCAACATAGGGTTAATACAGTATATGATAAAGAGGAAAAATAAG--GAGTAGTCAGAAAGATT----GCTATAGTATAACCCCAGCTAAGTTTTCTAAAAAGAtgagtcgagcac
s HiC_scaffold_1 113883325 1380 - 233722169 AATTCCAGAGTA----AAATACTCAAGTATCTGTCAGTGCAAAAGAATTGTATTGCTCTCATGCACATTGTGTCTAGATAGATGGTCCTCAAATGGGT--GGTATT-TTGCTCCCCATAAGTATTTGTTAATGTCAGAAT--------TCATCTGCTACTGGTATCTAAGAAGTAAAGGCC-AGGAATGCTGCTAAACATCCTTGGTCAGCACAGGttagctcaaaaataaa-aatgaacacatctAAAATATCTATAGTGCTAAGGTTGGCAGACCCtggttatatgtgtgtgtgcgtgtgtgtatgtgtgtgtatgtgtgtgcaataTGAATTGTTCCTTAACTTCTGTGTAC----AATTGTGAATACTACACTAATCATGGGTAAATTCAGCATCACAAGTGAAAATATGAAGAGCAAGAAAATGAATATGCAACACATATTGCATTATGCAAAAATTAACTGCATTCTTGCCTGTGCAATAGGAAGAATATGACATATTAATTGGTTCATCTTTCTTTTACTTGAGCATTTCTGTCAAATCAATTGCTTCCCTC-CACCAGCTAACATACATTCTGAAATAACATCTGTCTCTAACA-------CACACAAGGTGCAACTCTTATCATTCAGATGCAGTCACCTTTTGTTTCAGGATGTAAGGCAAGACATGAGGAAAAGCATTGTCCTGAGACGCAAGTAGTGCCATTTCCAAGAGAAGATGTGCAGGGTGATGTGTCATGCTATACCACACTTGAGCAGCAGATCCT-AGCAACAGTGGTGCCCATGGTTTCTTTCATACA-TGGAGTTTCTG---TGTATTTGAGGTATGGAGGTGGGGACACATGAAGCTCTGGACAGTAGGCTTTTCTTGTCCTGGGTAGAAGGCAGGATGCCAGGATACTTGTCCCACAATCAACCTTGGATCCTAAGTGGGATCACTAGAGAGCTGAGAGGCTGTTAATATCAGGTCATTAGTAGTTTCCCAGCTCTTTTGCAGAACAGAATGTTGTTTTGCTTCC-AAATATTAGGATTGAAAGCAGCTGGCAAAAAGTGTTCAGAGCGGAAGTGAGCCCACTTGgaaaagccaaaggaaaaattAC-------------TCTCAGACTGTGACCTGAGAAGGAACCTCACTCTCAACTCCTCTTTTAGATGGCCTTGCTTTCAGGTGA---GGACTCCCTCCAACCCCACTCCTGGAATGCCTTTGAAGCAAGTGTACTGTGATTGCAAGTTCTTTCTGGGGCAATGGAACTGAGAGA---CTATCATGGCCCTGGAGACAGTCAAAGCTGAATAGTTAATTTACTCTCAGAATATgcttaatgaaat------------tggaaaataaGGTGaatagacagaaaaaataaacacaatgacATAATCTTAGCTAATTTTTCTATGGAGACAAGCCAAGCGC

a score=122749
s chr3           103514846 5096 + 160039680 [encoded data, 5583 characters]
s HiC_scaffold_1 113889015 5196 - 233722169 [encoded data, 5583 characters]

a score=21626
s chr3           103531932 565 + 160039680 atagtagatgctcaaAGACACCAGTTCCCACATTTCCTGCTGAGCCTGAACAAGGGAGGTGGGAACAAAGGGAGAGAGCCGAGTAAGCTGAAGACTGTGTTATTCTGTTCAGCAATACTACGCTTACACAAAGAACAGAGAACACCCATCAAAGCAAACCGCCGTAACTGGGAGGCACTGAGAATTTCAGAACATAGAGCCCCAGCAGAAAGAGAGTATTCATAGAATGAGAGAAAGAAACAGAGACCGGCAGAAGC-----------------------------------CGCGCCCTGTGGCATATGTTGGTCTGACACGATGGTTCCT-GCTATCTTTCCTGTGACTGGTTTCAATCAGCCCTAAGTGCTATTCCGCTGGCTGAGTGGGTGTGTACCAGA-GTGATGGCACCTCATGCATCTTTGACTTGGCTTCTGTGCCCTGTGATGTTTGTTGCATTAGCTCAGGCTCTTCCTCCAGGTCCCACACAGAACAAGCAGCTCTTATATCTTAGAAATGAAGTGACAGGAAGGGAGAAAGGAACGAGGCTCGAAATGTGGAGTATT---TCCCAGTGGAGAATCAG-GAGGAAGCAGAGATT
s HiC_scaffold_1 113903589 587 - 233722169 ATAGTAGAGGTTCAGAGACA------------TTTCCTGCTGAGCCTGAACCAGGAAGGTAAGAATAAAAGGAGTGA-TAGAGTTGGCTGAAGACTATGTTATTCTGTTCAGCAGTACTCCACTTACACAAAGAACAAAGAGCATCAATCAAAGCAAACCACAGTGTCTGGGAGGCAGCAAGAATTTCAGAACATAGAA-CAGAGCAGCAAGAGAGAATGTGCAAAAGATGAGAATgaaagagaagctgaaagaaGCAATATTTGGGGGCAGGCACCGCCACACTGACAAAACAGCCCTTGTGATGCATGTTGGCTCAGTGCAGCGGTCCCCAGACATCTTCACTGTGGCTGGCTGTGATCCGTCCTGAGAGTTACTTCCCTGGACAAATGGGCATGTATGTGACCTTAAAGCATCTACTGCATCTCTGAAGTAGCTACTGTGCTCTGCAGTATTTGTTGCATTATCT-AAACTCTT--TACCAATTTCACATAGAAAAACCAGCAgttacattttagaaatgaa--aataagaaaaaagaaaaaagctagaaTGGGAATATGAAGCATCATATCCCAGTAGAGAGTTGGAAAAGGAGCTGAGCTT

a score=30586
s chr3           103532956 1072 + 160039680 ATCTTTGGGTTTTGACAGAACATCATTGACTTCCATCTTGGGGAAAAGTCGTGTTGCCTTAATTCCTACATAGCTAATCCTGTGAACTTTTCTTTAGGCTCTTTCAAAACCCAGTTTTCCCCTCCCAACAGCATCTGTTTCAGAACTGTGCCTGGCAGCCTAT--AGTGTGTAGAGTTGCAAAAGAGACCCTTTCTGGCGGACAGAGCTTTCCCGGCACATGGTGTGGGAGAAGGCGTGTTGCCCGTGGGCCAGGACGAAGCCTCTA-ATCCCTGACACTGGAGCTCAGCCCCGCTTGCCTCCTTAGCTGGCATTTGTGAGCAGTGTAGAAACCT--ATACGTTCAACACGGCACAG-------TGTCTTTCTTGCCCTCGTCCACATGCATGAAGCATCTGGGCATGAAAGTCCAAAGGCTGG-----GCCAGAGAGGGATGCTAAGTGGAGTTGTTCGG-----GAAATGGCTCCCACCTGAACTTCCTTCCAAA-----GCAGTTGGTTTTCAGTGTGAAAGTAAATTCTTGCCACAGGAAGGAGTGGGTTCCCAGCCCAGCCCACCGAAGAGCTGACCGAGTAGAGGGAAGTGGAT-CTAAGGATGGAACAGACTTCATGTTGCAAATAGAAAAAGGAGCCATTTGGGCAT-ATAAATAACTGGCAATAGAAATT--GCAGAACACATCGGAGGGGCTGACCTCCCTAGATAGCAGTTGGTATGGCCTTTCTTATTCAAAATCTGAACTTTGAGAAATTACAGATGTAGAGACAGAGCATTGTGAACAATTAACCACAAGAACTTCGATGAAATAAGAAATT-ATCTGAATCCACATCAGGATGAGCAGAGAATGAGGTGGGA--GATGCAGCAAGCCAGCC--ATGGGGATG--------TCAGCCCAGCCATCAGTTCCTTAGAATGAAGGGTGTGGAAGGCAACACGAGAATCCAGCAGCAGCTGCCCAGAGCCTACAGTAC----------ATTTTAGGCAGTTCTCATTACAAAATCTAAGACCCAGCCATTCTCAATTAACCTTTGTCTTATCTTCCAAAATGTAAATTAAAGAACACTTCCCAGCACTTTCATAGCAGG-ATCTGAGCAGGGAGAG
s HiC_scaffold_1 113904186 1091 - 233722169 attttagtttttggacaGATCATTGTTAGCTTCTA-CTTAAGGGATAGttgtactaatttt-tttttacatgaataaTTCTGTGAATTTTTCTCTGGGTTCTTTAAAAGCCCAGTGTCACCATCCTA-CAACATCTATTCAAGGAAGAGTGCTGCCAGCATAACAAGggtataaattataaaaagatgCCCCTTTGAGC------------------ACGTGGCTTGAT-GAAAATTTGTT-CCCTTGTACAAAGGCAAGACCTCCCTATCTGCAGGACTGGAGTTCAGCCTTGCCTGCCTCATG----GGCACTTCTGTACAACATGGAAACTTGCATCCATACATAGTAGCCCAGCCACAGATTTCTTTCTTGCCCTCATTGATAAACACCAATCACTTAAAGAGTACAGACCTAAAACCAGCTGATTCCAAAGGGGGATGCTAAATAGGGCTTTTCAGCATTCAAAGTGTCCTAGAATTTATATTCCTTTCCAACTAGGGAAGATCAGATTCAGGGTGGAAGTAA-TTCTTTCTATC--AAACAGTCAGTTCCCACTCCAGCCCACAACAGAAGCAACTGAGCAGAAGCAGACAGATGTTAATGATGGAGTAGAAC-AGCATTACAAGTAGAGAAAGGAGCCATTTCTGAGTTATAAATAACTGGCAGTAGGCATTTTGCAGAACATACTAAAAGGGGCAACCTCTCTAGATAGCAATTGATGTGGCCTTTGTTATTTAAAATCTGAACTTTGAGAAATTACAGATGTAGAGATTGAGAATTCTCTGCAATTAGTAGTAACAAGCgccttgaaaagaaaaattcatctgAACTGTGATCAGTATGAGCCAAGAATTAGGTGGGATGGAAGAAGCAGATCAGCTAGACTTGGATGGCATAAAATCAACAGACTCATCAATTTTTTAGTTAGAGAGACATGGAAGTCCACATAAGAATCCAGCtacaatttttt--aatttacagtGCTATACAAGGAATTTTAGGTAGTTTTCATTACCTAATGTAAGACTCAACCATTCTCAATTAACCTTTG---TGTCTACTGAAGTCTAAATTAAAGAACACTTTCTAATATTGCAACAAAAGGAATCTTACTGGGGAAAG

a score=23999
s chr3           103535220 807 + 160039680 TCTTCCTCCAGTG-GACATTTGGGTCTTCCC--CCCTCGGCTGTCATGA--------GTAATGAACTCTGGC------TCCCATTCTCTCTTGTACTCTATCATATTAAACACATCCAGCAGGCAAAGAGTGCTGAGAGAATAAAGCTCCACTCTGCCACAATAGGAAAAACCCA-----CAGCTGCCTCCATTGCAGCTCATTT-GGAAGCAGCTTGCTGGTGTGAAAGTTATTTTGCATACAATTAGCTGTTAGCTCTGAGCTCTCAACGCTATTTAAAGCTTCACTTTAAAGTTTGACTTTTTTTTTAGACCTTTAGAAGTTTTTATTATC--AAAATTCAGAAATGTCTCCATTCATCTGAGCGTTCTCCAGAATGTTCTATTCTTGGACAAGGGTATCCTAAAAAGTCACACTAATATGAATATGTGAGTGATTGCTGAATACTCTCCTTAAGTAGCTTAGGATGTGAGACCTAATGTACCTTCACCTGGTGGGATGGGAAGTAGGTATGAGGG------------------------------------------------------CAGGTGGGTATGCAGG--------------ATGGCCCTCCTCAAGCCAGagactgactctctctctctctctctctctctctctctctctctctctctctctctctctcctgtctcctctgtctttccctctgtctcaaaacttgaataaacca-gtaagcaaacacagtggatgttgctattgaggtaaccttggattttctctgccttatagtttgaaaaacagaaaatgtttgtgaatactcacattttagctattaataaaacaaattacttatagcacacctcacaaatggtggcccacagtggcatgggcact--ctgttgaga
s HiC_scaffold_1 113907068 838 - 233722169 tctccCACTGGTGCAATGTTTggttccttccatctcttggatAGTGTGAATAACATTGCAATGAACACAAGTATGCAACCTTGCTCTTTCTTATACTATACTACATTTTATATATCCACAAGGCAAAAAGAACTAAGAGAATAAAGCTCTACTGTACCacgatggcaaaaaaaaaaaaatcagctgcctACTTTGTCACTCATTTTAGAAGCTGCTTGCTAGTGTGAAA----TTTTGCATAACAGTGTCTATTAACTCAAAGCTTTCAACTCTATTTAAAGCTCCACTTTAAAGTTTGAC--TTTTTTTAGTCCTTCAGAAGtttttaatatctgaaaattCAAAAATGTCTCCATTCATGTGAG-----------ATCTT-TATTCTTGAACAAGAGTATCCT-GTAATTCACACT------AACATGTGAGTGATTGTGGAATACTCTCTCTAACcagctttggtttttaaaactaaTGTATCGGCACTTGGTGGAATTGAAAGTAGGTATTGAGGATGTGTTTGTGGGTAGAAGTCTTCTCTCAAATGAATAATTTCTAATCCCTTTACCAGTTATGAATGCAAGCAAGAAAATCACCAATGACTGCACTCATGGCAGTGACAAATTCATGATTCCATGCATTACCTTTGCGTCTCTCTCTTCCACt---------------------------------------aaagaaagcataaaatataCAAGCAAGCACAATGAGTGCTGTTGTAGCGATAACCTTGAATTCTTGCTCCTTTATTTCTTGATAAG-ATAAATGATTTGTAAACTCTCATGTTTTAACTACTAATACAAGGAATTCCTTGTAAAGCACTTCACAAATGATTCACCACACCAGTATAAGCAATTGTGGTTGAGA

a score=18093
s chr3           103539109 611 + 160039680 AGACCTGGAAGGTGGTGACAGATACGAGCTGAACCGGAACATGAACAGTTAGTACAACACAGTTGCCGCTGTCCCCACCACCCTCCAA---------GCGGGCTAAGGAGCCTGCAAAGTGCCA--------AGGGGCAAAGA---------------GTCTCGGTGCCCTCTGTTTCTTTGTGGCTTAGACTAACAACGGCAAGAAGAGGATCC--GTTCCAACAGAAAGCCCTTTCCTTGAGCACAGCTGGCACTGTGCCTCGTCCCCC---ATGTTGCTTCA-GGAGCAGAGTGAGTTTGGCTGTGGTATTAGAAACAGGCTGGGAAGCAGTAATGGCTCATCAACTTTAAGCAGTGCAGAGAGGTACAAGTGGCAATTTGGAGCTAAGAAGCCTCGTATG----GAATTGAGGCCACAATGGCTT-CTCCATTCCTTAGTCTTCATTCACCTCTGATAGGTGGTA-ACCTGAGGCTGCCTCTAACAACAGCCTTAGTGACAAAGACAGGCTCTGGTGGTCAAAAGGTACTGCAGGGCAGGAGTGGGGTCTCAGAACCATCCCATCTTAGGCCTAGGG----------------------CCCAGAGCCT--GTTAAGGAATAGTCCTGCAACCCGAAGGTGGAGAGGAACTCAATAGAGAAT------TTAGCATTGGAGC
s HiC_scaffold_1 113912003 669 - 233722169 AGAGCTGGCAGATGGTCATGGCTT--------ACACAGACATAGGCACTTAATGCAACACAGCTGCCAACGTCCCTACCACCCCTCCACCCTCCACCGCTGGCTGAGGAGCCTAGAAGAGGTGAGGACATGGAGAAGCAAAGCCCCGCTGTCCCCCATGCCTCTGT-CCCTTGGTTTCTTGGCAGCTCGGATTCATGGCAGCATGACGAAGATCTCGGTCCCTGAACAAAGCCATTTCCACAGACACAGCTGGTTCTGTGC-TCACCCCTCCCAGTGTTGCTTCAAGGACCAAAGTGATTTCAGCTGTGATATTAGAAACAGGCTGTCAAGTAGTAATGCCACATTAATTTTGAGCA-TGTGCAGAGGTACAAGTGGCAATTTGGAACCGAGACATTTTGTTTGTGTAGAATAGAAACTGTGACAGCTTCCTCCCTCCATCAGTCTTTGTTCACCTTTCATGTGCAGAGCATGTGTGGCTGTCTTCAACAGCGT-----GTGACTGTGACAGGCTCTATATAACATTAGGTGCTGCAGGACGGAGATGATGTCTCAGAATTATTAAATCACGGCCCTGGAGGAGCCTTGGATAGAAGTCAAATGCCAGAATCTTGTTTATGGTGTGGCTCTGCAACCTAAAGCTGGCCAGGAACTCAGGAAAGGACTCAGGGTCAGCATCAGAGC

a score=10321
s chr3           103540810 292 + 160039680 ggaaccTGTGATCTACAGGCTTTAGCATCCCCTGGAAGACAGCTTAGAATTCAGGTGTGGAGCCCCAGATGGTCTGTGTCAGAACGGGAGTGGAGGGCACCCCTGAAACAACTTCTTACACACCACTGCCTTTGGTAACCCCTGGGGCCCAtgtcaccatcagttgtatgtgagtgttgcacataatttgttactaataat----acagtgcccgattgaaaggattatttacttcttgaatagaGCAACTACAATAGCCTAGCTC--ACACATTTGCATAACAATCAGCTCCCTGAT
s HiC_scaffold_1 113913220 287 - 233722169 GGGACCTATGGACCACAGGCTTCAGAACCCC--AAGAAACTGCTAAGATTTAGGCTTCTGGG-----GATGGGCTGGATCAGAATGAATGGGGAGGATACCTAGAAAACTGCTTCTTAGACACCACTGCCTTTGGTAACTTCCAGGGCTCATGGTACTATTAGTTGTGAGTGAAAGTTGCAAATAATTTAACACTAATAATACTCACAATACACAATATGAAG----ATTTATCTTTTGAATTCAGCAGATACAGTAGCAGGGCTCTTGCGTATCTGCCTCATGATGAGCTTCTTAGT

a score=30450
s chr3           103542330 1270 + 160039680 TTCCCTTATTCTATTACAGAAGTCTCT-ACCTAGCTCTGGGTTGACTTCAGTGAAAGCCCTGCCCGGG-------------GAGAGAGG-ACCTGGGATGAATGAAGAGAAGCCACAGCCTTAGTCCATGAGCCCCTTCTGAGGTTAAGGAGAGGAGAGATGCTGAGCTCAGTCATTCAGGAGTCACTACTTCTCCTCAGTCCTCTCTCCCTCTCTACTGCATTGCTTTCTTTTCT--GGGACAGAGAGCAAGAATCTAGCAACA-----------TGTTGGGAATCC-AGTGGGTTCACAAATTTGATCCTCAC-GCAAGTTTTCCCATCCCCTTCCCTGTCCTTCTATCCTCCTCCACCTGCCCATCTAAGCTACTCAATGGGCAG---TGCTGCCATGTCAGTGTACCCATAGGCAAATGCTCACACTC-TTGAGAAACTAATTTTCTTATTTGCTGCACACTGGCTTCATTAATTCATGAAGTACAGGTGACATCTCAGGAGTGAAAA--------------------CCCCAGAACGTCAATTCCTCATAAATAATGGTGGTGGCCCAGGGGGAG--TACTGTCCTTGTTAATCCACTCTCTTACATCACT----GCACAATAAAGGACCAGATTCTAAACAAGCCAAGAAACAGAAATAATGAGAGTTCTCAATATCAGATCGATATCCCTCAGAACGCTGGGGCAGAGAGTTGACAATGACCCTGTGG-TGGAGCAGGAAGCTGAAGAACAGCTTGGTC-TGTGTGAGTCCCCAGCTTTGGTTTCTGATTGCGAATTACAGAGAGA--------CATCTCTTACATAGCATTTGCTCCCCAGTGCTCGTtctct-----ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctttctctctctGGAATGCTGTGGCTCTCACCCACCGGAGCTCATTAGCACATTGGAGGCTCACTTCAAGGGCAGCTCTTGTTGTCATTTGTCGGAATCAGGTTGTCTTTAATGATCCA-GTCCTCCTGAGGGTGAGGCCCTTTGGACACAGAC-ATTTTTAAAGTGGCAGTTTATCTGGAAATGAGTGGATGACTGTAGAATGCCTGTGGGATAATTAGAACTATTTTGGTAGTAGAAGTAGCATGGGGT-AGATTTACTGAGTGTCGGGTTGTTCTTCAGTCTTGACACATCTGTTGTTT--AATATCTTGGATAGTCACAGACACATGATGAGGGGTAACTCAGATATA-----CACAGAGGAATGTATGC-------CAGCCTTGCAGCTGACTTGGG------GTAGGTCACAGAGGACAACCTTCCTTTA-GTAGTAAAAA
s HiC_scaffold_1 113914002 1277 - 233722169 TCCCCCTTTGCCATCACAGAAGTGTCCCACCCAGCCCTGAGTCTACTTCAGTGGGAACGCTGGCAGGACAGGGCCTCACATGGGAGAGGTACCTCGGC---ATAAGCAGAAGCCCTAGCCCTAGTCCTTGAAAGCTGCCACA---CAAAGGATGGAGGCGTGGTAAGCTCAAGCATTCATGTGTCATCACTTCAATGTGATTGCACTCTGCTAGTTGGTACATGGCCTGCTTCTCTCTGGGAGGGATGGTGAGGAGAGGGGGACACCAGTGGCTTCTCTGGGGAATCCCAGTGGGAG-GCACATTTGATTCCCATAGAAACTCCTCCCCAcccactctccctccctccaGAGTGTGTTACCTGCTCAGCTAAGCCACTTAACAGGCCACTTTTCTGCAGTTTCAGTGCATCAATAGGCCAGCGTTCACACACAGCAAGAAACTAATTTTCTTATTCACTGCACATTGATCTCATTAGGGACTATAATGTATGTGGCATTTCAAGAGGAAAGAATTCCTGAGTTGGGGGCCTTTCTCAGTGTTTCAACTCCTCATAAATAATGGGTATAGGCCTGGGAGAGGGCACTGTCCTGGTTAATCTACTCCCCAATATCACTTAATGcacaataaagaaacaaattccaaaCGAGCCAAGAAGTGGAAATAATGTGATATCTTAATATCAGGTTAATATTCCTAAGAGCACTTGGGGGGAAAGGAAACAATGGCCCTGTGACTGGAGCAAGAGATTGAGGAGTGATGCAGTCATATGTGAGTCCCCAGAGTTTGTTTCTGATTGC-AGCCCCAGGGAGAAGCCTTGCCACTTCCTACCCCCCATTTGGCAGACAGCACTTGCAGTGTGGTAGCTGTCTCTC-----------------------------------------CTCTTCCCGTCAGTC-------------------------CAGAAGCTCATTAGTACTTTTGAGGCTCACATCAAATGTGGCCCTAATTGCCATTTGTAGGAATCAGGTTGCCTTTTATGTTCCACATCCTC--GAGTATGCAGCCCTTAGAATttggacaatttttaaaattgcagtgTATCTAGAAATGACTGAATGACTGTAGAAGGCCTATGAGA---------------TGGAAGTGGGAACAGATCAGGATAAGGTTAAAGAAGCCTTGGGTTTCGAACGAATCttagtttgttcattttttaaaatctcttgaaTGTACACTGGCTCATAGGTAGTGGTGCCATGGACATAATGGTTATAGCAGGAGGTGGACCTGGATTCAATCTTGCAATTGACTCATGCATATCATAAG-CAAAAGGCCCATCCTACTTTTAGGCAGTAAGAA

a score=66211
s chr3           103550285 2429 + 160039680 AGAAACGCCTTCCCAGTGACTCCATGGGAGCGTGTGAGAGCTG-------CAGGAAGAGAACTTGCTTCACATTTAATCCTGACTACAAAAGTGGAAAACAAAAGCTGATGTTTAATTAGGATGTAATTATTCATCCATGGTGGGCTC--CCAGCATTCCGTCCTGTTTTCATTAGAGAAACATTATCTCCTCATTAGCGACCCAAGTTGTGTCCCAATTTTGCCTGCCTGGGG--------GCTGGTGATTCCCCCCCCCCCCCCCAAGGAGCAACAGCTGCAAGAAACCACTACTGTGTGGCCAGGGAGGACA--GACTGATGGGTGAAGAGATGCGGGTTCT-TGACTGTTTCCTGGGAGGGAAGCTATGGGGTGGCAGC--CCGGAGCACCAAGAACAAGGGAATCTGCAATATTA-------CATTGCACCAGGAATGTGCCCAGTTT-GCTTATTAAATTAGTGTCAAAGTTGGGATTAAAAAACAACTTTTTTCTCTAATCTAATACAAAACTTTTTCATCACTCAGCAGCTTCTACAGTGAAGACTTCTCAGAGGTCCCCAGGGCTGGGTGA---GTACCACAGGCCTGTGTGGGCTGTGTCCTCTCTCCTGCGGCAATGGTGTT-GTATGATAGTGTAATTATGTGAGTATAATTGCTTACCTGATCCCTCCCCACTCCACCATGCCCTCGCTGAGAAGGAGAGCATAGCTTGTTGAGAGCCGTGGCCCAGGCCTGTGAAACAGATGGCACACACTCAGC----TTGGTTAAAAGTCTGGGTGGATGAATGGACTGCAGCGGTCCAGTCTTCTATTGGAAA-----CGGAAATGTCCGGTGAGTCTCAGTGTCGGCCTAGAAAGCTTTCCTTGTAGTCGGGATTTTAAACC--GAAGCTAGCGTACCCT---TGGGGAGGGTG-----------CAGGCTTAGTGTAGGATTCCTAATTAGACTTATGAATCTGA---TGGGATCTATAACTTTGGTCACCTTTAGAGACTGACTCAcag------------ggctggcaagatggctcaggggatt--aaagttgcttgctggcaatgatggcccaagcttgatcct-----------------tgggacctatt--gatggaaga-----------gaggaccaactctcagg----------ttgtcctctgg---caca-----cgcatgcACACACAAGTCAATAAATAAATGTAATTGAAGTATATATTTAAATCACACACACACATTACACACACACTCCCCTACATTCATGTAATGTCTGGTCTTAGTTCTTATGAAGAAGAAGGGATGGGGACAGCTCCGGCTTTGAGTGTCTACCAGAGCCA----------------AGT--GGTAGACAGAGAGCACTTTCTATCCCTCTGTCTCTGT----TGTGCCAACCCCTGTTCAGTTTT-CTCAAGAATAATGTGATCAAAAGTATATCTGAATCTGAGTGCCATTGTGGGAGGCTAACTGGCAGTTTTGGATTTGGAAGG-CAGTGGCCTGCAGAAGGGAACCCTTC----AGGCAGCCATTCCACGGAgaagcaactggagatgttgaacccaaggcagacagaaacaaggccttgtgatgccaaaagagttgttgtgagtgggaggctgtgggtggaggggtgagcctggatcaataggtgaatgttaccaggagtcaatttctgctcttgccaagga-agtacctttcgaattatgccgct-------gaaatgatctg--ttagaggaggctgaatgccctgtcaccgA-------CAGACCTAGATTGAGAGAGCAAGCCACCAGCAagcagcgagggtggggattttaagaacctgggttttcttctcagagtctgagtctcaagtagctcggttccctttgaaaggcatttcatttccctcaatttGGCTC---------------------AGTCTCGCCCACCCTTTCTGAGCTTTTGCCCTCAAGTTGAAGTCAAGAGCTTGTGCGAGCGAGTT----CTAAACAAACTGATGAGGTTCTGAGCAAAATCTCCTTGGATAATGCAGTGGAATATATTCTTCTAAAATATGAAACAGATAAGCAAAGTAGCTTTTCTTCCCTTCCTTGAACATCCCAGAAGCA-CCACTCTTGAAGATTGCGCTGTCAGAGTCAAAGGCTCTGAAATTAATGCAGCTCAATTTTCTGCCATTTGTGATAGATTTCTGGCCCTTTTCATGCATATGAAAGTCCCAGGCATGAGCAGAGGCGAAAC--TCAAGAGGGGAGGGAGGTTATTGCCGCAGACTTCCTCCAGCCATTCC-CTATTGTCTTCATCTGATCACAGCTTTTTGTTTTGCAGCGAATAACAATAAAATAAAAAAATGAGGACGACTGAGAAGGAAAACCAATGATGCAGTTTTAATGTTCCTCCAACAACACAAACAGAATTAAAATGTTCTTCGATTTCAGACAAAGGAAGAAGGATTGGGTTAAGGGCAAAAGAAAAATTTGTACTGT----TTTATAGAAAGCACGAGTTAGAAGCGCTGTAACTTTTCTGGGC-ACACAGAAAGACCCG-CTAGAACATTCCTTCCAGTGCT
s HiC_scaffold_1 113921430 2537 - 233722169 AGGAATATCTTCTTGGTGACTCCATAGGAATGTGTGAGAGCTGAGTCTTACATCAAGCAAATTTCATGCACATTTAATACTGAATAAATGAGTGGGAAACAAAAGGCAGTATTTA-TTAAGCTGTAATTATTCATCCTTGGTGTTCCCTACCCCCACCACGTCCTGTTTTCATTAGAAGAACATCATCTCCTCATTAGTGACTGGAGTTACATACCAGCGTTGCCTGCCTGGAGCCAAAGATGTTGGGAA------------------GGGGGGAGCAGCTGTGGGAAATCACTCCCATG-AGCCTTGGAGGGCGATGGCTGATGGGCAA---GAAGTGGGTTCTCTGGGTGTTTGCCATGAGA----CTGTGAGGTGGCAGCTTCAAGGGGAGAAAGTGCA-GGGAGTCTTTGGTATTAGGCACTGTGTTATGCTGAGAATGTGTCCACTTTAGCCTGCTAAAGTAGCATCAAAACTGGGATTGTTTTTGAAGTGTTTTGTTTAATTGAATGTGACACTTTTGCAGGACTCAACAGCCTTCTCTGAAAAGTCCTCCTGGAAACCCCCAAGGCTGAAGGAAAGGTTTCACC--TCTACGTATCCCATCTCCTTAGACCTGTTCTGGAGCTGTCAGTAGGATACTGTAATTACCTGAGCATAATTGCTCCCCAGGTC--TGCCCACAAGACCCTGACCTCTCTGAAAAGGAGACTGTGTCTTATCAAGAGCTAGACTCCTGGTGTCTGAGACCCATGGCACAGGCTTGGTATATCTGGTTGAAAGGATGAGTGGATAGGATGACT----TGTTTCAAACCCTCAATGGAAAACCCTTTGAAATATCACAGAGGACTGAGTGCTGGACTGTGCAGCCTTGTTTACAGTAGAAATTCTTAACCTGGAATCCTACCTTCCCCCCATTACAGGGGTGAAACTCACACACAGGATTAGGGTAGAGCATAgaaat---ttaatgaaactgaatGCAGAATTTCTGTATCTGTCTTTCTGGAGAGGAT-ActcctagttttttgtttttgttttgtgtggtaGTGAGGAGTCTTTGCAGGGTCTTTGCATTGAACTATactcccagctcttttttatttattgttttgagattGGGCCTTATTAGGTTGCAAAATTGTCCAGATTgagcttgaactttcaatccctcctgcctcagcctctagggtTACAGGTGTTGCACCCCCACATTGGCTCACCAATAGTTTTTATCagcttttcaaaataattcatggcctcccaaaggaaaagaaattcattg------TGTAATGTTTGGCCTTGATCCTTGTGCAGGAGCAAAGAGGGAGTCAGCTCCGGTTTTTCAGGGCAGCACTAGTCATCTATAGGGAAACTGCAGTTGAGTAGGCAG---TCACTTTCAGTCCCTCTGGGTTTGCAGGCTGTGAGACACTCTACTCAATGTCACCTAagcacaatgaaataaaaagtatgtCTGAATTTGAGTACAACACTGGAGTCCTATT-----GTTTTGGATTTTACAGGTCAATGATTTGCTGGAGAAATATCTACCTGAAAGCAGCAATCCTGCA---AAGCAATCAGGGTTGTTGAGTCCAAGGCAAACAAGAAAGTGGCCTTGTGATACAGGAAAAATGG--------AGGAGGCTCTGG----AGGGTAGAGCTGAGATCAATAGCTGAATGTTATAGGGAATCAATTTCTGCTCTTAGAGAGGACAACCTTTTTCCAGTTAAACTGCTTATAAATGGAATGATCTTCCTGAGAGTATAGTGAGCTCCTAGCTACTAGAGAAATGCAAGCAAaagctgaatgaataaat----atcaaG--GCTATAGAGATGATTCTAagattctgagttttcttttcagc-CCTGCTTTTCAAGTAATTCATCTCGTTTTGAAAGGCATCTC-----CCCTAATTTTGTTCCAAAAGAGATCACCTTTCACTAACCTCACCCATGATGTCTAAGCTTTTGTCA-CAAGTTGAAGTCAAGGGTTTATGCAGACAAGCTGACTCTAAACAAGCTGATGAGATTCAGAACAAAATCTCTCTAGGTAATGCAGcgaaatatattcttttaaaatatgaaatggatAAGCAAAAtagcttttattctcttttttgaaTATCCTAGAAATAACCATTCTTGAAGATTGATCTTCCAGAGTCAAAGGCTCTGAAATTAATGGAACATAATTTTCTGCCATTTGTGATACATTTTTGG-CCTTTTTATGCATATGAAAGTCTTAGGCAGGAGTAGAAGCAAAACCACCAAACTG-------GGTTACGTTGACAAGCTTCCTTTGGCCATTCCTCTATTGTCTTTTCCTAACCACAGCTTTTTGTTTTGCActgaataacaataaaataaaaaaa-gagaacaagagaaagaaaaacccaatgatGTAATTTTAATGTTCAGCCAACAATGCAAACAGAATTGAAATGTTCTTCGATTTTAGACAAAGGAAAAAGGATTTGGTTaagggcaaaagaaaaa----taatgtagcaCTTATAGAAATTAGGTATTGGAAATACT-TAACTTTTCTGCACTGCACAAAAGGATTCATCCAGAATTTTACTTTTAGTGCT

a score=52486
s chr3           103564413 2270 + 160039680 CTATGGATCAAAATATGTCAACTCTTACAAGACACATTTTAGACAACTGAATAACTTGATGATATATTGCatattag------agaattactttgtcagttttgttggggattatgtttgcatatgcacatatgcacatatgtatgcatatatcagaagcatatgca---gaattgacaggtaagctaatgtaatatctggaatttttctta--agacttttaaaaataaagagacgagggtacggagtgaacaagactagaatatcaatatttttggaagtaggtgacaggcgttggggggttcatcttattattcttgccttttgcttttgcacgtctgaaaacatttatcaaacaaaaCTCAATTACTTGTTCTCTCCCCTCATGAAGCTGT---------------------------GAGGGTCACC-CTCCGTCCAGTGCCCTGTGCTCTGTGTACCAGCTCAGTAGGAACCCATAGATCTATTAGTGAGACAGCTTCATTAAGAACTATCAGATTCAACCT-TAAAAAAATGAGCTGATGCCAATGTCAGTATGCTTAAAC--------AGATGATTCTGTAAAGGTCAAAGAGATTAGGAGAGTCGAGATGGGGTCTGTTCCTAGACTAGGGCATGACCTTCATCACAGTGAGAGAATTTCCCTACCCCAGAAATAGCCACGTGAACCACGGTAGATAAAAGCAAGAGCTTGAGGCTCCGGGTTTTGCTGGCTGTGAGCGGAATTTACCCCCCTCCGGGGCTTCACACCAGAGCCCAGGCCACACAGCAGTGGGAGTAATTAAGCCAGGAAAGGTCATAGATCCATAATTCATGTCTAAAGGGCTCAATTTAATCATCAGGGCCTTTCTACCTCC---CCACTGATGTCCACCTCAGTGTGGAGGGAAAAGGGCCACCACCTGAAGG-------------------CTGGATCCTCCCCTTGGAACAGAT---------------GGGGCAGTGTCTGCTGT-CAGTCTTTGCTATTCAAATGCAGGCAAGGTGTTC---------CCCACAACAGAAGACTTTATCAAGGGCACACTCTTAAGTTTGGGGTCATTCCGTAGACCATAATCAAATCCAAGTGATAATCACGCTgctaccatttactgagctcttaatgtatgccagaccctgcccagaaattagcccagttctagtaagtgcccatataatcttcat-----tttacagttcagaaagtggaggttcagatgggttaTAGACATTGAATAAAT----CAGACAGAATTTAGATCTGCCTCTGAACAGCTCCCAGGCCCACAGGCTTAACCCCTTAGTGCTTCGGCAACTAGAATTGTCTTG--------------------------------------------------------------TTGGAGAAGTCAAGAGTGGCTTGTTCAACTCTTCTGGAAATT---GGCGGAAATT---GGAAGTGAGGATTTCTGCCTTGACTGGAACCCTCTGCTGTCACTCAAGCTTCAACCATACAACACAGCACC-GCACCAGCACCCCTGAAAGCAAGTTTTGCATCCTCACAGGTGTCTGTGGCAATTGTCTCCTGGGACCTGGCTTGCTTTATGTTGACCCCAAC-CTGTATGTGCCTCACTTTCTGGGTCTATACCTGGAG--CACTGGGTGCTGTTTCTGGTCCCCAAGAGCTGTTAGCATTTGTCCTCCTGGTATAGCATGGGGCACCACTTGGCGGTTGCTGGAGAGCTTGTAGCAAACTCCAGGAGCCATCTTCCTGTGGTCCAGTTGGTACTTTGAGGACTCAGCTCCAGTGCCAACCTAGTGGCTCATCACTCACTGGGGGCTGGAACCAGGAAAGGTCTGAAGTCACAGAACCTGATCTTTCTGGTCAGAA-------------ATATATCCAGAAATTATGGC--------------------TATGGTAGTACCTGAAAACTCTTTACCTATGCC--AACTTCTATGGCATGCCGAGAAAAATCAAGGCAGAAGATGTTGGTCTTCACTTGGGTAGGGGAACTAAAAAATAAAACAGACGCTCTGGGA--AGAACATGGAGGGGGCTGCAGGGTCCCAAAGTGGCTC-----------AGGTGGAAGCAACTGAGGCCACTGGTTCAGGGAAGGTGCTTTCCA-GGCATGGAGCCCACAGAGCAGCCACACCACGGAATTGCTGTGGAGGACCCTAGGGCCAGTGTCA-GGACACCATAGAAAGGAGA-----------TGGAGATGGGAGGCATCTGCCAGTCTGGGGAAACTGAGCTCTGTAGGAAGAGCTCCAAGATAGGCCCAGGG--TCTTCAAAACATCTGTTTCCAACATATGACCAG-CTTTAGGAATCCCAGATAGAAGAGGAAGATAACCCTCCCCGCCCCCACCCCTGCTTCCTGCACTGCTGAACAGTAAGGCCTGTGCTCAACTTTAGATACTTGGTGG
s HiC_scaffold_1 113930362 2326 - 233722169 CTCTGGGTCAAAGTATGCCAACTAT--AAAGAGGCATTGTGCATAACTGGGTAA-TTGAATATATACTGGATAGTAATCCAAAAATATTACTTTGTTAGTTATGTTAAGAATGAGAAGTACTCAT--ATATAAGGAAAGTCATATGTATCTATCAGAAGTTCATGCATAAGAATTGACAGATAAAATGGTATAATGTCCAGAATTTGCCTTAGAATATTCTAGGAAATTAAGGGGGGAAGAGATGAA----ACCAAATCAGaatattgataaatttttaagttAGGCATTAgtatatagaattttattttgttattct--------acttttgca--------aaca----------aaaaagtaatcttTTGGTCTTTCCCCTCTTGGGATTATAAACTAGCAATACCCCTTCAGACTCTGGAAGGTTACTTCTCTATACTATGCTTT---TCCTATGTATCGGTTAAATAAGAACCTGCAGATCTGT--------CAGCTTTATTAATAGCACTCAGATTCAACTTCTTCAAAATTGAGGCAGCAATGATGTCATTACACTTAAAAGAAAGATAAGGTGATTCTGCAAAGGTCAAAAAGATTAGGAGAGCCCAAAGGGGGCCTGCCCCTGGACTAGGGCATGACCTTCATCACAGTAAGAGAATTTTCCTTCTGCAGAAATAACCACATGCATCAGAGCAGATGAAAGCAGATGCTCCAGGTCTTGGGCTTTGCTAGCTGTGAACAGAATTTACACCC--CCAGGGCCTAGCACAAGAGTCCAGACCACCCAGCAGTGGGAGCAATTAAGCTAGGAAAGGTCATAGATTCATAATTTATATCTAAAGGGCTCAATGTAATCATCA-------TCTGCCTCTTTGCCACTAGTGCCCACCTCAGCATGCAAGGAAAGGGG----CACCCGAAGGTCTCTAGACTAGCAGACCCCTGTTTCCCTCTCTGCAGGCAGATCACTCTTTGGAGTGGAGGGTGATTTCTATTGTGTGGCCATTACTGTTTGCACGTGGTTAACATATTCAGTTGGTGGCCTACCAT-GAGAGCTTTATCAAGGTCATACTCTTGAATTGGAAGTCACTCAGTAAACCATAATAtaatacac---ataaacacacagtTATCACTTactaagtatttattttatgtgtgGCCTTTTAAAGGACTTATAACATT-----TAATTCTATACACAATTCCAATAGGTAGTCACAGTTGAAGAAATAGAGGTTTGGGAGGGTTATATACATTAAATAAACCACACAGCCAGGATTTAGATCCATCTCCGGCCAACTCCAAAGTCCATTGTTTGAACCAATCTGCGTCTTgagaaatgaagttattttggGTTGAACATGAGGGTCACACAACTCTCTGGGTGACAGTTTTACTGTGGTTTTAAGTTTTTATCAGAAAAGTT-AGCCTGGTTTTCCCAGTTCCTCTAAATACTAAAGACAGAGGCTAAAGAAAGGTAATTTTTCTGCCCTGCCTCAAATCCCTTACCCTTGATGAAGCCAAAACCATACAACACAACACCAGCACCA-----CATGAAAAAAGGCCCTTGACATCCATGAGTATTTGTAGCCATTGCCT--TGGGACCTGACCTGTTTTCTGTTGATCTCATCTCAATCTGCACCtgatattctgggtctttaaCCAGAATCCAACacctgct-----tagttcatggtggccttcAGTTTTTATCTGTCAGGTG-----------GCTACTCAACTACTGCTACA-AGCTTAT-GCTATGTCAAAGA-TTATCATCCC-TAGCACAG-------TCTGAGCACTC----------------------------------------CTGGCCCAAGGAAGGCACCTGTGGCCTGGCACCTGATCTTGCTGGCTAGAGTGTGACTACTCTCAGATATCCAAAAATATTGATATAATCTCTAATTCCTCCCATATTAtagt-tcttaaatttattttcctatttctggTCTGCTCTGGCATGCTGAGAAAAAGCAACAAAGAGGATTTTTGTCTTCACTTGAAC------ACTAAGAGCTGGAGCACTTGCCCTTGGAGCAGAACATGGAGGTggcagcaggaaccagcaaaggcTCCGGAAAAACAAAGGGGACAATAAC-AAGGCCATCGATTCAAGGAAGAGGATTTCCAGGGTAGGGAGCCAATTGGGCAG---------------GATCTGGAGGCCCACAATGCCAGTGCCACAGAGATCAGAGAAAGGAGATCAAGACTCCCTGGAGATGGGGAGACTCTCCCCAGTCCAGGTGACTGAGCCATATAAAAAGAGACACAAGTTTCACCTGAGGAACCCTTAAAGCAACCATTCTC-ACATGTGGCCAGACACCTACAATCCCAGGCTGAGGAGGAAGA----------------CATTTCTATCTTCcagtctg-tgttcattaggctttctctttgcttttagaAACTTGGtgg

a score=68978
s chr3           103566670 4986 + 160039680 [encoded data, 5887 characters]
s HiC_scaffold_1 113933054 5254 - 233722169 [encoded data, 5887 characters]

a score=132008
s chr3           103571645 4077 + 160039680 [encoded data, 4502 characters]
s HiC_scaffold_1 113938913 4264 - 233722169 [encoded data, 4502 characters]

a score=113578
s chr3           103576264 5512 + 160039680 [encoded data, 6116 characters]
s HiC_scaffold_1 113943863 5351 - 233722169 [encoded data, 6116 characters]

a score=42284
s chr3           103581786 1461 + 160039680 CAGGtgctggagttcggatctgtcgtgtctgcccaaaggcccacacgttgcaagcttggttcctaag-tgggcctaaagtgggaggggtagagctttccagaaatgaggcctaagggcaagtctt-----------gtatcttgtctttacagggatatcaggaccacaattccttcctccttctgtccctctctcttgcttcctggtcatgatgtaaaaggtttggcttccccacatgtacccactatgatgtgcggccttgagccaaacagagggactgagagagcataggaggaaacatctgaa-actgggagccaaagtcaacattt-ctctttgtgagccagagacctcaggcattC---AAAACCATAGCGAGCTGACCGACACACTAGGTGGTGAAGGCTGCCTG-AGGTCAAGACCTCCCTGAGTTATTTTTCGTT------ATTCCTCTATGATTACCACCTCCTCTTTGCTGATTCCTCTCTTGCTTTCCCCCTCACCACCTTACACCTCCTGTACAGATAAA-CTCTTGGTTTCCAGAGTCTAATTCTCCTTGCATTGTCTGCCTGTGAGATGCCAAAATTCAGGTTCTCCT-AGTCCTGGGAGAAGATTCT-CCAGGCATGGGGTGGCCCTACTGTCCTTTCATAACCAGTACTGAGTGAGTGCTAGGCACTGATTCCCAGTAATCCATCCCCTTTGCCTTCTCTAAGCATAAGTGTCAAGGGAACGGCAGCTGGAGG-------TCACATGGAGAAGCAATTGAA-TAGCAACTACATGGAGAAAAAAAAGAA---------------------TCCCCTGGTCC---CTTCCCCTACCTTTATTTCATTTATGAATTCAT-TTTTTTTTTTGTCAAGCTGAACATTTAAATGCACTCTGTGCTCTCTGGATCCCCCTCACCTCCTCCCTTCTCATTAAAATTCTAATTATTACCAGAGCAAGTAAAATGTATGATCAAAGGAAAGCACGGCCCTAGAAATACCTTTTGTTTTAAAGTGACTC--AGTGCAGAAAATGGGCTCAGAGCAGCTGTAACAAAGAACAGATACGAAGGGTTCAGAGATGGGCAGGCACTTAGAATACGGACATTCATGTCTACAGTAGCTCTTCTGATGTGCCCAGAAGGTTAATGGCTTGGAGAAACAGCCTCCAAGACATTTAGATCGTAAATGTACAACAGAGAAAACAAAACAAAACAAATCTGAATTTAAGTACTTCCTGTGTGTGTTTATCTGTCTCTAAATTATATACA--TACATGTTCTACCAAAGTGATATTGTTGAGCTGTG-TGGATAAG-------------TCTCATCTTACTCACTTTGTGACCTGGGCAATC-----------TATTCATTCTCTAG-------GACAATAACCTATTTCATTAGAGAGGATTACATGATTAAATATATAAAAA-CACTTT-AATATTGAACATAATGATGTTGAATAAATTGACTAAATCCAATAATAAAACACTTATGACTATCAACCTGTATA-TGAATTCTTGACTATTT
s HiC_scaffold_1 113950261 1485 - 233722169 CAGGTGCTATAATCAGGATCTGGAGTGTC----CAAATGTCCATGTACTGAAAGTTTGCTTCCCAGGGTGATGCTG--TTGGCAGTGAAGAAACCTCTCAGAGGTGGGGCCTAGTTGGAGGTCTTCAAGTCATTGAGGGCATCACCTTGAAGGGGAAAGCAGGGC------TCCaccacctttctttttctttctttcacttcctgGCTATGAGGTAAGCACTTTTATTCTACTACGTGCCTCCACCATGAAGTGCTGTGCGACCCAAAACAACAGGGCCAATCAGtgatagactgaaacctctaaacactgtgaattaaaataaaccttttctttttacagGTTGATTATCTTGGGTATTTGTTATAATGACAGAAAACTGAC-AACACACTGGG-AATAAAGACTGGTTGTAGGCCACAAAT------AGTGATTTTTAATGGAGTTAAAACCTGTACAATAACCTCCTCCCCCAGCGTGATTGTGCTCATACTGACTTGGTTACCATCTTGTGCCTC-TGTATGGATGAATCACTCACTGTTTGGGATCTAATTGTCCTCTCCTTGCCTGCCTGGCAGAAATCAAAGCCCAGGCTCTCCTGAGTCCTGGGTGAAGATTTTTCCAGGCATAGGACAGACCTCCTGAG-----ATAACCAATATTGAGTG----CTGAGTGCTGAGTCCCAATAGTCCATACTC--------CCGTAATCACATCT-CCAAGGGAACAATGGCTGGGGGAGAGGGGTCAcatggagaagaaataaaaatagcaaccacactgggaaaaaaaataaaacaaataaacaaaaaaacattcCCCTGGTCCACCCTTCCCATCtctct-tttcatttataaattcagAGGGTTTTTTTGTCTGACTGAACATTTAAATGCACTCTATGCTCTCTAGATTCTCCTCAT-TCCCCCCTTCTcattaaaattctaattattaACAGAGCAAGTAAAATGGATGATCAAAGGAAAGCAAGG-CCTAGAAATACCTTTTGTTTT-AGGAGACTCATATTGCAAAGAATGCATGCGGAAGAGCTGTAACAGAAAACAGATGTGAAGGGTCTGGAGATGGCCAGATACTTCGAATAAGGATACATATATCTGTAGAATTTTTCCTGGGGAGCCCAGTAAGATAAGGGCTTGGAGAAATTGCCTGTAAGCCAATTAGATTAGGAATG-----CAGAAAAAA---------------TTGAATT--GTTGTCTccaatacatgtatatttatcccCAAGCTATATACAGGTACATGTCCTACAGAGGTGATATTGTAGAGCTGGGATAGCTGAGTTAAAGCCTATTTTCACtccttactagctgtgtgacctgagCAATCCTGTATCTGTTTCTACATTTGCAAATGAGGGTAATATTATTCCAGTTCAATGGAAAGGATTAAGCAAGGAAACATACAAAAAGCACTTTAAACCTTGGATGTAGTAAAGttcaataaattaattaa----aatgcta------TTATTACTATCAAACTATAtgttaaaattttgatttctt

a score=187757
s chr3           103583797 6929 + 160039680 [encoded data, 7390 characters]
s HiC_scaffold_1 113951908 6681 - 233722169 [encoded data, 7390 characters]

a score=114447
s chr3           103591837 7418 + 160039680 [encoded data, 8428 characters]
s HiC_scaffold_1 113958897 7473 - 233722169 [encoded data, 8428 characters]

a score=28222
s chr3           103600730 3791 + 160039680 [encoded data, 4129 characters]
s HiC_scaffold_1 113966978 3162 - 233722169 [encoded data, 4129 characters]

a score=29549
s chr3           103605403 1668 + 160039680 AATGAGATTATCATAAA------AACTGTGTC-TATGGAGTTGGCTGAGATTCCAGAAGCAATGGGCTTTGGATATCATGTGGAATGAACAGTAATTCTCAGTGTAA---ACCTTACAGAGAACCAGGCTGGTTT-----------------------GGCATTgggtcatg-ctgcctggattggaaccatgcctccctaaaatgagttaagcaggttagttaactc-atc----tatttgtctgctcttctaaaagatgtgggtaagcccagtctctgc---gtaaagttgtgttgggcattgtaggaaagaatccacaccaggttcct--tacagcgtgcacag--agcaagtgtcaggaagacactggctatGAGCAATA--------------CCTTCACTAACGTATGGGCCATCTTCCTTCTGTCTGAGGCAGGCAGTCCCTGTACTCTAAGTCACTCAACTTCCTCCCAACACGCATCAGGGTTACTTCTTTGAATGTCCTCTGAAGCCCTGAACTCTGACCTCACA-CTGACAAATAAGCAAAGAGTTTCCAGCACA-------------GGAAGCTCCA---------TCTAGCATCAGATC----AGCTGGA------CTGTCAGCCC-----CGCAAAGC----TTCCTTCTAACGTATAAACTGAGAAGGAA----CCTTTGTCAT--------CTCCAACACCAACC---------------ACCACAGACAAGTCTTTATTCTGAATCTACAAACTGTGAAGAAGCCAGGCTCTCCCACCACACAGTCTTTAGAGACGGTCAGTGAGACAGATCCAGTTGTCACCCTCTT-CTCAGGGACAAATGTGAGCTGGAGTAGA---------------GCAGAGTC-----------TGG--GGCA-TGGTCATAGATTATAGGAACCATCCCAGATTCCGGAACGTGGGATTTCCCCATTGCTGGGCTTTGAAGGAAGGGACTCAAATCTTCTTGGAACCAGTTAGCTCCACCCCT--TTGGGCCCTTGCCTCCTAGAGGAAGAGTTGCCTCAGCTGACACTAACAGGAGACTGGCTAGGTTGGTGTGAGAGGAGAGGCAGATGGGGGTGGAGGAGAGAAAGAGGTGAGAGAGGAAATCCTGGTGGCTGTGTGGGAGGCCA------GGAAAAGCTGGGCTTGATTTAGGAGAGGAGCTGTAGGGAAAGCCAGGCTGCCCCCCAACAATGAGAACTCTAGGACTAGCCAGCCTAAGGGCC-GGGGCGTGGCCTGCAG----AACATGCGCCTTGATGCTC---AGGCTATTCCTGAGCCAGTAGCTAGGTATTGCATGCCCCCTCAGGGC--AGAGGAACCTCTTCTGAGAGACAGAAGGAAAGATCTGAAATCTTCCAGGGAACTCAGGTAGC---CTTGCCCTGCCACAGCTCTGAGGCATCTCCCCTGTGACTCTGCTACTAGGAAAGCTAG---CTTGAAAATTCTCCATAG------CTGCTCCCTTCTCCCCTCC----------CTTCCTCCTAGCCTGAGCCTCATTCCTCCACTACTCTGCCACT--GCACTCAGTGCCTGGAAAGAAGGAAATAACCATTTGTGTCACCTGCTCACCAGTGGGTGCCATTAACTGGCTCTGGCAGAACATGCGGCCTATAATTTTTGGAGGCGTTACAATAATGGAGCTAATTTGGCATTTCATCA-TGTCCTCTCGGGCAGGCTCACAGGAGGGGGAAGGGAGGCCTGCGGCCTGCTTCAGAGCAAGTTCTCGGTGAAGAGCCCTATCCTGAT------AGCTTCAGGATTCTAAGCCCTT--TCCCTCTGTCTTTATCTTCCTCTGCTGTGCCC
s HiC_scaffold_1 113970760 1672 - 233722169 aaagagattttaaaaagcaagttaaCTGTGTCACATATGATT---TAGGGTTGCAGAAGCACTGGG---GAAACATGAT--------AAAAAtgatcctcagtgacagtgaccTTTTAGAAAGCCACGCCGGTCTCCTGCTGATTATAAGGGGTAGGAGGTGCTGGGGCCTGGCTGCCTGAATGGAGGTCCATCTCTCTTCTCTTTTGCTAAGTAGGTTGATTAACTTTATCGctatactttttt-ctcttctggaaAAGATGGGCAAGAATAACTCCTGCACAGTAAAGTTGTCTTGAGGATTGAAGGAGAGAACCCACACAGTGCTCTCACCCCAGTATCCACACCCAGCAGG-GCCTGGTGAGTGCTGGCTGTGAACAGCAAGCCTCTTTAGAGTTTTTCCTTATCGT------CATATTTATTGTGTTCGAAGTGAGCAGTCCTTGGACTCCAGGCCATTTGACTTTCCACTGCCACCCATCAGGCTTGTTTCTTTGTGG---CGCTGTCTCCCTGAACTCTGGCCTTGTATCTGGTAGGTACTTAATATAT-----GCACATGGGATAGAAGTGGGAAGTTACAGATGGAGATTCTACCAT--GGTCCAGGAGTTGGAAAACTCCTTTTAATTCACAGCTTCAAAgcctgatttttttaaacctatACACTAGGAAGGAAGGGATCTTCTTAACAGAGGAGCCTTGAGTGCTGACCTGATGCTGCCTGCTGGTCACAGAGAGGTGTTTACTTTGAACT-------------GCAGCAAGGA----CCCTCAGGGAGTTCATCAGGGAGCTGAGC-AGGTAGAATCAATTCCTGCACTCTCACCCAGGAAGGATTGTG----GGAACAGACCTGCTGGGTACTTGACAGAACCATTAGGTGCTGTGGATGGCAGTGGTCACCGTCTATAGGAGCTGCCTCAGGTCAGGGGCTCTGTGAGT-CCCTGTTGTTGGGCCTGGCAGGAAGGGGCCTGGCTCTGTTGGGAATGGGCTATTTCTACCCTTGTTTTGGGTCTTCCTTCCTTCAAGAAGAACCACCTCAGCTCATGCCTACAGGAAA------------------------------------------------------------------------TGGCTGTGCCCGATGTCACAAGCAGGAAAGGCAGA--------------AAGACCTTCATGGAGGGCCAGGC--------AACAAT------------------CAGCCTCTGGGCCTGAGGTGTGGCCTGCAGGTTCAACCTGC--CTTGTTGCCCTGCAGACTACTCCTGTGTCAGCAGCTT----CTCCAGGCTCCTTCAGTGCCCAGAGGCAGCTCCTCTATGC-AGAGAAAGAAGGATGTCAAAACTACCTAGGAGCTCAGGCACCATGCTGGCCATACC---------------------------TTTGCTACCAGGGCAAGTGGAGCCTCAAAAATTCCCCTTGgatccctctcctctcctctattCTCCACCCTCAGGGCTGCCTCCTGGCCTGAGCCTCATCCTCTCTCCACTCTGCCTCTCTGCATTTAATGCCTGGAAGCAAGGAAGCAACCATTAGTGTCACCTGCTTACCAGTGGGAGACATTAGCTGGCTCTGGAAGAACATGCAGCCTATAATTTTTGGAGAAGTTACAATAATGGAGCTAATTTGGTATTTCATCACCATCCTCCTGGGTGagc-----agagggggaagggaagcCTGGGGCCTGGTTCAGAACAACCTCCCAGCAAGGAGCTGTGTGTTTTTTCATGCATCTTTGGAGTTCTGGAGCCACAATCcttgcttccttttcctcttttctcatgCTC

a score=51968
s chr3           103611070 2524 + 160039680 cactctatggtcactatggggg--tcacttcacattcaaaccacagcaCGAggaaagccattggagggtt--aagaaggtgcagaggcaatcctcttcatattttgaa-gaatattctggcacccaggtg--------------agaacaaagggaaacaagggg---gccaggtgg-----------gtacaggtagacgtgtcttgg-cttcctgtggcataagagatggggagaggagagagacttgaggtgagatttggagacagaatttgctcagcttggtaaagaactcaatgtaaagaagagaagttg-ggttccagatagtttctcatttctgacttgagcactggggccgatggaagagctatttaccaaggaagagaaaacgcaggaaacatataaatgaaaggtagaaagctcagctttgagcatctgtgaattctgaggtttctgtgagatagccatgcagttaataccatgatagttctatcagcctagagcagtggttcttaaccttcttaaggctgtgaccccttaatacagttcctcacgttgtggtgaagccccaccataaactatttttgttgctacttcataactattatgaatcataatgtaaatatctgatatgtagatggtcctgggtgaccctgtgaaggggttgttcaaccctcaagagggtcttgatctacagaattgagaattgttggtccagaacctagaagtgatgtttg--gaggacccataaacccaggagccatggcagtagtgatggagattagcatcatggatgcctgaggggagaagacatcccaggcctgggtaat-gatgagaacccag--tgggaagaggcaaagtctctaggaagagcca-cagaggag-ctaggtaggaatagcccataaaataggaaggcgaccagagaag-gtCCAGCAAGACCAAGGGGTTCTGAAGTGAGAGAAACGGA--GACTGATAAAAACCGAAACCTTCATGGTTCCCAGCCCTAATTCTCCAAAGAGACCCTGGAGGGAGAGAAGCTGTCAAGCATGCACCTTCGTCTTAGACAAAATAGAGCTCTGTCTATTCGCCT-CCTCCAGGCAACTATTTGCAGAAACATCACCCAGCCACCCTAGGGGAACTATCTACTTGG-------ACATCTGTTCTCCTGCAGAGAGACCCTGTCATCACAGCCCAGTGAGGGacagaga----tcactcactgctgagatgccaccttcttccctgggaaaagtgatggctgtctgacagccacctggcaggacaacatgcaggcaagaaatgaagaCAGATTCTCATCATTAGAGTCACTAATTTTCTGTTTACTCCTCTCTACCACCCCCATATGTCATTAATGAAAGACCGGTAGTGGGAACAGATCTGAGGGGAAGCCTCCTGCCCTGGCCTCTCTTGGACAAAGCATCTTGTGCTGAAGACC-----CTGGCTTTAGCAGGCATTGCCTCCACCCCTTCCAGAACTCCCCCAAACTGCTCTCTTCAAGCCCCCT-----TCCTCCCAGGCTCTATATTCCTCCTCCCAAA------------GAGCTGC-CTCCCCAGTGTGATTCTGACCCACA--TCTTC-TCCAAAAGTG--------TATGGAGCTCTGAACCTCTTGCCAATGGCAGGTTCA--AAGGAGAGGCAGAGGGAGTTTCCTAG------------GTGTCCCTCAGGATGTCCCGATACTCAAATATTTGCCCCCCACTGATGTGTTTTCGTCTCTCTATGGGTCCCCTGAGATCAAGCACAGCCTGGGTGACCTCACTCTTGCTTCTTGCAGCTCTGCTTCGCATGA-CTCATTAGCTCCTCCACAGCCAT-CCCAAGCTCTTGGCATCCACA-CTGAGGCAGAAGC--GAGAGTATTGAGTTCCTTTAAGGCACCTCTGTTCTAATT-ATCATTTATTCATAACACTGCAAAGGTTTGGGGGCAGAAATGCACTTGTGAG-AAAAGCAAGCAGGGAATTCTGAACAAATAGAACCTGCCCCAACATCAAGCAAATAGAGCCAGCATCACAACAGATAACAGCCCATCT----TTCCACCTCTGCCACCCTCCACTTTGCTGTCGGAGCCTTGGAAACCCAGGCTTGAGTGACACAGAGAATCAAACTCCCTCCCACCCCCAGGGCCTGGTGCTCACAGCAGGCATCCCCAGTTGGCACCCTGGGAAAGAGTTCCCACCTCCTTGGCTCTCTCTCTGCAGGAAGCCAAGCCAGCCATGCGGGTGTGGGGCGTTCTCGGTGTCGTTCACTTTCCCCAACACTAGCCCAGTCATCCAGTAGG-CATTATATCCTACTG-CTTTATCTTACATATATCCTGCCTCTT-CATTATGGCAACTGCCACATTTGT-------CCCTAAC-----------ATGAGAAAACACTCTCAAAACAGGCCAAGAGGTTAGAGAAGGGA----------------------AGATGACCC---AAGGCCAAGTGCTATCATCAAAAGCAATGAGGCTTCATTTCAAGCAGTGGGAAGAA---GGTGATAGCATTGAGATACAGAAGATCTGGGGAAAATTTGAAGATGGGAG---ATGAGGTCGTTTGGTACAGTA-CTGAAAGTGTGGGCTTTTGCGCTTCACATCCTAGCTCT
s HiC_scaffold_1 113975318 2353 - 233722169 CACTGTA-GGTTGCTGTAAGGGCCTCAGGTTTTATTCCTACTGCAA----AGGGAAGTCATTGGAGAGTTTCAGGGAGGGAGTGATACAATCCTTTTTACCTCTTGGATGGAGCCTCTGGTGACTGTGTGGTGATTGGAGCAGGAGAACAAAGGAGAGTAAGAGGTCGGTTAGGAGGCAGCTTCCAGCAAACAGGGAGATAGGACTTGGGTTTCCTGTGGCTTGGGTTATGAAGAGAGGC---AGGGTTGAGATGGACTGTGGAGATAGAATTGGCAGAGCTTGGTGATGAACTCAACACAAAGGAGCGAGGCAGAGGTCTCCAATGATGTCTTATTTCTGGCCTGAGCAACTTGATGGATGGAAGGACAATTTCCTGAGCTGGTGAAATTGAAAACAGTATGTAAATGGAAGAT-GAAAGGTCACCACTCAGCTTCTGAGAAGAATTTGGTTTCTGTGAG------------------------TGGCTGCAT--------------------------------GGCGATGACACATTGA----------------------------------------------------------------------------------------ATATG-----------------------------------------------------------------------------AGTCTGAAGCCTAGAATAGAAGTCTGTGGAgggcctttaaatttgggagcCAT-------------------------CTGGATGAGCAAGGAGAGAAGAGGGCCCAGGCCTGAGACCTAGCTGACAAACTGTGTTGGGTGCTGGCAGGGACTCAAGGAGGAGCTGGCAGAGGAGACTGAGCAGGAGCAGCCAGAGAGGTGAGGTGAGGACCCAAAAGGAGTTTGACAAGACCAGGAGGTTCTGTAGTGTGGGGGACAGAAAGATGAGTAAAAACTTAAATCTTCAGGATTCT---------GTCCCCCAAGAGATGATGAAGCCAGAGCTATTGCCAAGTGTGTGCCTCTGGCTGAGATCAAA----ACCCTGCCTACTTGACAACCCCCAGGCACCTTTTTGCAGAAACATCCTGCTGCAGCTCCAAAG-AACTACCCAACTGGGGCCAGGACAGCT-CCCTCCTGTAGAGTGGCCCTGCTG-CACAGCCCAGTGAAGGGCAGAGAGCATCCACTCACTGCTGAGATGCCTGCCGTCTTCCAGGGGAAACTGACAGCCATCTGACAAGCTCACTGCAGGACAACTTTCAG-CAAGAAATGAAGACAGATTCTCAACATTAATGTCATTAATGTGCCGCTTACTCCTCCACACCACTGC-GCCTGTCATTAGTGAAAAGCCAGTGGCAGAAGCAGATCCGAGGTGAGGTCTTCAGTCCTGCCTTCTCATTGACAAGCCACCC------AAAGAGCACCTTCTTGCTTGGCCAGTCATTACCTTCATCTCCTCTAGAACATTCTCCTGCAGCTCCTTTCCACCTCCTTGTAGCCCCTCTTCCTCTCCACCCACCTCCTTAAAAATCATTTAGAAGAGAGCTTCACCTCCCAATGTGGCTCTGACTCACAGATATTCACCCAAAAGTAATGGagcatataaaatacaaaacctCTTTTCAAGGGCAGGTTCATGAAGGAGAGGCTGCGGGAATATCCTAAATAAAGCCATCTGTGTCCCTGAAGCTGCTCAGATACAGAAGCATTTGCCTCCTGCTGATGTGCTTGAGTGTCTCAGAGGGTCCCTCAGGATCAAACCCAGCCTAGAGAATCTCCC-----CTGTTCACACCTCTGCACCCCATGAGCAAGACATGTCCTCCACAGCTGGACCCCAACTCTTAATGTCCATACCCCAGGCTGAAGCTGAAGCGTATTGAG----TTTAAGGCTCCTCAGTTCTTGTTGATCATTTATTCATAATGCTGCAGGGCCTTTGGGGAAGAAAAGCACTTGAGAGAAAAAGCATGCATGGAACTCAAAACAAATGAA------CCCAGCAGGAAGC--CCAGAACAAGCTTCATAA-AGACA------CATTTACACTTCCAGCTCAGCCACCCACAGCATTCCTGCCTGAGCCCTGGAATTTATGCCCGAGGAGGCAC-------------CCATGTCACCC---AGGCTTGGTGCTCACAGTAGGGGTCCCCTCTTTGCACTCCAGGGAAGGATTGCCAACTC--TACCTCTC-CCCAGCGGGGA--------AGCACAGGGTGGGCAGGGCG---TCAGTCTC---CGCTGCCTTCTACCACAGCTCCCTCATccagtaggacacagaatcccaCTGATTTTGTCTCATATGTGTCCTGCTTTTTGCTTCAGGGAATTTGTAACACTTATAACTTAGCCTTTACAACCTGGGTCAATGGGAGCACACTCCTAAATCAGACCAGGGAGCCAGGGAAGTGAACCCAAGAGGAGGCAACAGGACAGGTGACCTGGAGAGGCC-AGTGATGT--TCAGGA-TAGCCAGAGATAATTTCAGGTAGCAGGAAGAATGGAGTGATGGCACAGAGATTGGAAAGACCTTGGGGAGTTTGGGGAAAGGGAGTTAATGAAGCAGAATGGTGTAGTAGCTAAAAGTGTGGGCTCCCAAACCCCAGTTCACAGCTCT

a score=277403
s chr3           103614061 13276 + 160039680 [encoded data, 14670 characters]
s HiC_scaffold_1 113977746 13368 - 233722169 [encoded data, 14670 characters]

a score=277277
s chr3           103627693 8512 + 160039680 [encoded data, 9345 characters]
s HiC_scaffold_1 113991107 8900 - 233722169 [encoded data, 9345 characters]

a score=26461
s chr3           103636373 1231 + 160039680 TGTGTGTCCTATACACCTGAGATTCAAGTGATCTGTGTCTTCCACTCTAGCCAGG---AACAGCAGAACGAGGAAAAAGA--GAGTCCAGTTGAG-CCAAAC--AATCGGAGATGCTGGAG---TGGAGTCTAGCAGACAGCTGCAGTTCCAGATATGCAGCCTGGCAGAGAGGTCAGGAATGAGATGTTAATT-ACTGGAAACTTGCATACCCAGAATCAGATGCGAAGACCGAAGGCTGCC-TTGCTAAGTGGGTACCAGCAGGCAAGGAGGGCCTCAAGGAGAGCTCCTTCAGGAACCATCAGCATGCAGAGATCAAGGGAAAAGAAAAACAATGTGACCAGTGAGGAGGAGGTAGCCAGGAGGCACAGATC-AATGGCTATGCTGGTGAACAAAAACAGATCAATCAAGGGCCCAGCAAGATGGCTCTTCACAGCA---AGCTTGGTTGAGGTGCTCACACAACCCTGTTCACAGAAGTCC--ATTTCATTCATGCTTGTATGTCCTTTATTTCTTCCCCCCTCTG-TCTACCCTTGCtttttcaaaactggtaaaaatatgcataacaaaa------------------acctaccctgccactttgatagttttca-ggtagagtctagctgcactgtg------cacactggactataactgttctcactactgcctatccacagaacttatttaatcttgcaaaaccaag--------------------gtctagtcccttccactcaccatccccagtgtctagcaagcaccgctcttatttctgtctttataaacttgacaagc-ctgggtccccttcacataagtggactcctagagtttgccattttact--gctggcttatttcacttagc---atgtcttcaagattcatt-atgttacagtatgtgttagaacttgcttcctttttaaggc----taatatttcattatgtgtagatatgacattttgcttaggcatttatctgtcagcgggaatgtg-gtttcttctgcctcaaggctattgtgaataacacttctctcaacac----------aaaagtatttcatttcctactttcaattcttatttatatatgcctaaaagtagaattaattgcagtattataaaaacctatgtctatttttttgaa---ccaccatccttatctccatagcaac--agctccatttaacatcctcattcagggtacat-aagatgtcttatttgtcctcaacttggccagggttgttctgttgttgtttatggtggttgtgctgttaggtgtaaagtagtatcttattatggt
s HiC_scaffold_1 114001427 1248 - 233722169 TATATGTTTT-TAAACTTGGGAACTGAGTGTTCTATGTCTTCCACAGAAGCCAGGGGAATAAGGGGAACAAGGACAAATGATGAGCTCAGTTGGGGCTGAACCAAGTTTGAGAGACTAGAAAGATGGATGTGTGCAGACAGGTGCAGTTTAAGATA--CAGCTGGGCAGAGAGGTCAGGTGTGAGATGTTAATTTACAGAAAGCTCACATAT--------------GAAGACAGGAGGCTAACACTGCTAAGTGGAT-TAAGTAGGCAAGGAGAGCCTCAAAAAGAGGTTCTCCAGGAACCATCAACATTTAGAGGTT-AGggaaaaaggaagtgaggtgaATACTAATGGAGAAGTATCCAAGCAAAGCTGATCAAATGAAAATGC---TGAACAAAAACAGATCAATCAAGTGCTGCATAAAACGATTCTCCATAACATCCAGGTTGTTTAA-------ATATAACCCTGTTCAC-TAAGTCTTGTTTTCACCTGCATTTGCAATGCTCTGATT--TTCTCCTCTCAGCTCTGCCCTTGCCTTGTAAAAATT-GTGTTCCTCTACATACCAGAATTgactattttaatcattttttccttttttattttaatcatttttacagTATAATGTAGTTGCAGTATGTACAGTCACATTGGTGTGTAACCATT---ACCATTCTCTATTC-CAggact--tttcattttataaagctaAGCCAAAAAGCCAAAAAGTAACTCCTCGTCCCTtt------ccatccccagcccctgtcaacCACCCTTTTACTCTCTCTCCCTGTGAGCTTGATGATTACTGGATGCC--TTACCTGAGTAGAATCACAGCGTTAACCCCTTTGTCTAGCCGGCTTATTTCACTCAGTGCAATATCTTAAAGATTCATTCGTGTTAGAGC-----TCATCATTTCCTTCCTCCTTAATGCAGAATGATATCACATTATATGAATCC---ACGTTTTAAAAATCGATTCATCTGTTAGTGAACACTTGTATTACTTCCAGCTCTTGTCTACTGTCAATATTGTTAATCTGAACACTGGTATACAAAAAGGCACTTGAATTCCTGCTCTCAATCCTTCTCAATA----CCTACAAGTGG----AATTTCTGTATCATATAATTCTATGCTTCATGTTTCGAGGACCCATCCTACTGTTTTCTATAGCAGCTACACACTACTTTACATTCCTTTCAGTAGTGCACAAAGAATTCTGCTATCTCTATGTCTCCACCAACATT------------TTTATGGTAG-TATGCTGGTGAATGTAAAATGGTATCTTATTGTGAT

a score=35253
s chr3           103639522 1237 + 160039680 aGTCTGCCCAATCCAGACATCTATGCATCTGTCCTTTAGA----GATCTAAAACTAAAACTCTGAAACCTCAGTCTCATCTTTTCCATGACAGTGCCCTCCCATGGCCTCTTGG-----------------------------TCCCCAACATCAATTCATGCCTTCAGGAGCTGCTAAAATGTCACGAGGTCACCCTCATCACACGCCACCCTAGGCGACCACCCCATGTACATGCTCTCTGATAAATGATTCTGGGAAGGGA-AAGGCCTGACTCACCCTGGCAGCTGTACTAGAAAGTAGCATG-GAGCTCAGCAAAAGCAGGCATGCTCGCTCCTGTACAATATGTGGCTCCAAACAAGACATG-------------GAGAAGAGACAGCTGGATGGTTG-----------GAAAGACGGGGTTTGGAGGATCTGGGGGAACCCTTCGTGCTGAGGCACTTTCCCAGGTCCACTCAAGCCCCTGACATCGTGCATCTCCTTTCCCACAATAGCAGAA-TATAATTTTCCTGCTTGTAGAGCTCTTAGCTGCAGATAGTCAGCTCAGGAAAAGAGAGCTGTGGAGAAGCACTGGAAGCATAACGTGGCTTTGCTCCCTGGAGTGACTCTTTTTTTACTCCTATAGATTGGGAAAGTTTGGTGACACATCACAGACTATCCAGACACATCAGGAGCTTCCACGTAGGCAGGTGCCTCAGGCTTTCCTGAGACACGTAACATTTCTTTGCTCCGTGGCTTCTTCCTGCAGTCTGTGCCAGAGCCAGGTTTGTTACGACCCCTTCAGACTGGGGCAATGAAGAATGAAAACTTGTGGCTAGAAATTCTAAGAGTTTCTGGAAATGTGAGTCACTGAGATGACAGGGGACTTGTTAAATCATCGTTGAAAGGGACAGAGTCATTTTGTACGCTGGCCTTTCATCTCCCTGGAGAAATTACTAACAATGACACACAGCAGTTAAAATAGATTGTGAAACCAAAGAGCCACACAAGCTTCAAATACTGCCTTCCTTAAATTATCAATAACGTTCCCTTTCACACAATCCAAGCACGCCCAGCTCTCTCTGCAGAGAA---------GCCCATATG--------TCCACAGCTGCCCTCGTGACCTTTGCTCGCCCACTCTCTGACCAATGAAGC--AAGGGCATAATTGAATTCTCCAGCTTATTGAATCCCAGTGGCCACCTGCTGTGCGATGTTGCTTCCTTCCAGATCTTCCTGATAGGGGTGGGTTCTTCTCTTTGATACCAATGTTTTTGGGAGCT--AAGGGTCAGAAGATGTGG
s HiC_scaffold_1 114005537 1231 - 233722169 AGATTACCTAACCCAGATAGCCACACAGATACTCTTCACATTATATCTTTAAATGAACCCTCTGAAACCCCAGCCTCATCCTTTCCCAGATAG-GCCCTGCCATGGCTTTTTGGAGAACCATCTACCATCCATATTAATTAGATCTTCCACATCAATT-ATTCCTCTAGGGACCACTAAAGAGTCACAAGACCCACCT-ATCACACTTAATCCCAGCCAGTCACCCCACAAATGTGTTCTATGATGGACAATCCAAGGAAGGGAGAAGTCTTGATGGAACCTAGCCAAACTACTGGAAAGC--CATGTGAGCACTGTAAAGACAGGAGGGCTCATCACTG--CAACATGCAGCTCCAAACCAAACCTGAATTATCAGACCTGAGGGTAGTCTGATGGTGAGTTGCCATGAGAGAGAACAGATCAAATTCTGAGGTTCCTGAGGACACCC--------AGACACTCCCCCAGACTGGCTGGTTCCCCCACCTTGTTGCATCTCTGTACCTACAGTAGCAGAGCTGTGACCCTTCTG----TAGGGCTTTCAGCTGAGAACAACTAACTCAGTAAATTACTGCTGGGGG-------TGGAT-----ATGTGACTGTATTCTCTGAGGTGGCTCTTTCTCTGC------AGATTGGGAAAGTTTGGTGACACATCTGGGATTATCTAGAGAGACACAGAGCACAGATGTGGGCTGGTGCCTTAGGCTTTTCTGAGACatgtaacatttcttttttcagtagcTTCATCCTACAGTCTGTGCCTGAGTCA-GTTTGTGAGGA-CTTTTCAGGCTGGgtcaataaggaataaaaaccTGTAGCTAGAAATTCTAGGAGTTTT---AGACGTATGTGACTGAGA-GATAGAGG------TGGGCCATGGCT----------------CTTTGTACCCAGGTCTTTCATCTCCCTGGAAAAATTACTGACAATG--ACACAGCAGTTAAAATAGATTGTGAAATCAAAGAACCAGACAAGCTTCAGATATGAGCTTCCTTTAAtt-ccaataa-atttattttcaaagaatacaaataaCTTCA-CTTACTATGCAGAGAAATGCTCTGGGGCCTCCTGGACTCTGACCTGTAGCCATTCTCCTGCTTCTAGCTCTCTGTCTCCCTG-CCAATGAAGCTGGAAGGTGGAACTATATTCTCCAGC-TAATGGATCCCAACAGTTACCTGTCATGTAGTGCTATTTGCTGCCAGA----ATTGCTAGGTGAGGATT-----------TACCAATGTGTCTGGTAAATTCAAGAGCCTTAAACTATGG

a score=28326
s chr3           103640915 1115 + 160039680 CTCCTGTTGGAATTTAGCTGCCCTCTTAATAGTATTAAAAGCTGAGACCT--GGAAGTAATTATTAGATCCATGCATGTTGTATCCGGAAGAGCAGATCTGTGCTGTCATCATGGGCTCCAGTTGGTTATCTTGAGAATGAATTCCTAAT-------AAAAATGGGCCTGCTAGATTTTCTGTTCCATCATCAGTGG------TCATCTGCTCTTCCATCACAAtatgatccagtacaa-ggtccttagcaaatgccactaccatattcttctgctccctggct-tccaggaccatgaacctaatacatttcttttctttacaagttctctagtctgtgatattctgttatagcatcagaaaacagactgagaTGGCAATCTTCCCCAGTGGATCCCTTAGCCTCACTGAGCCTCATCTGTTTCCCCTGTAAAGAGAGTTTCTGACAGCAGTGCT-GCACTGCTCAGCTGAGCTTCTGGGCTAGGAGGGTGATGGGTGAGGAACGGACATACTGAGAACGCACAGCTGTTAGCACCTGCACAGCCTCC-AGGTCTTTGAAGGCCTCTCCCCACACAACCCCCTTTCACAACTGGGTACCTTGAGAACAAAGGGAAGAAGGCACAGTGCT---CAGAAGCGGAGGCAGGGTGGGAGGGACAGG-----AAGAGGGATGCATGCGAGGAATAAATCAAGTGGCTGCGTAATTAATTTAGAATAACTTAAGTGCTGCGCATTAAAGAGAAACAGAAGTGGTGACATTTAATGAAT-TGTCAGTCGATATCTCACTCATTCCAGCTGTCTTTTCAAATGTCAGCCACCTCACAGTCCCTTTTCCTTGCACCTGAAGGTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtACAAAACAACCACCAGGCCTGGTTTCTGCACAGTGAGATTACCTTAGACT-CAGTCTCAGAAGCAGG-GCTCCTGCCAGCTGCAGGA--AAGAGACCATGCCCAGCACACCCAGAGAACTCAGTGGGCAGTGTTCATTGCCCTCAACCAATTCATTCTCTTAGCCCTTCACCCACCTTCCTGGCATCAACTAT-AAAAATGCACATGGTGTTTTTATATGTCCATCAAAAAAG
s HiC_scaffold_1 114007695 1012 - 233722169 CTCATACTGAAATTCAACTGTCATTGTAATGACAACAAAGAAAGAATCCATAAGAAATAATTATG----CCATGAAAACTCTGTCCTCACATGAGGATTAATACTGCTACTAACGGTATATATAAGTTACTGGGGAAGTgggattctgattttaaaaaaggatgacTTCACccaattttctcttt-gtcttgagTGTGCATACTCACGTGCCCTACCACCGTGCTGAAACACAGCACAAAGGCCCTCGTCAGAAGCTGCTACCATGCTCTTGAAGTTCCTGACCCTCCAGCATTGTGAaccaaacaaa---cctttctttataaagtaccca----------TTTCCCtatagcagcagaaaacagacC-AGACAGAAGCTTACCTGGACGGATCACTTAACCTCTACAAGCCTCATTTCCCACAACTATGAAGCAAGGACCAGCC-GCAGTGATAGCAATGGCCAGCTCAGCTTCTGACCTG------------------------CATCCTGGGGAAACACTGC---------CTGGGAAGCCACCTACTTCTCTGAAGGCCTCTGCTCATGCA----CCTTTCCTAATGGGGTAactggaaaacaaaaggaagaagccACTGTGCTGCTCCTAGGCTGAGAAAGGGTGGGAGGAACAGAGCAGCAAGGGGGATGTA----AGGAATAAATCAAGTGGCTGTGTAATTAATTTAGAATAACTTAAGTACTGAGCACTAAAAGGAAACAAAGGGGGTGACATTTAATGAATGTGTCCGTTGATATCTCACTCATTGCAGCTGTCTGTTTAAATGTCAAATATCTCACAGTTCTTTTTCCTTGCAGCTAGAAGACATGTGCT---------------------------------------------------------AACAACAACCAGCCTTGGCTTCTCTTCAGTG-GGCTGCCGTGGGCTATGATTTCCAAAGCAGGAGGTCCTACCAGTTGCAGGAACAAGGGACAATGCCCAGCAC-TCCAGGGAGCTTGG------ATGCTCCATCCCC---ACC-ATTTATTCTCTTGGCCCTTCACTTACCTTCTTGCCATCAACTATAAAAAACACACAAGCTGTC------TGCCCAAAAAGAAAG

a score=32056
s chr3           103642399 1344 + 160039680 tctct-ctaacttcccagagctttgccttttttccagagaaaaccttagctgaactcttGTGAGAG-----AAAGCCAGGCAATGGTTGCTCCAGAGAACTCTGGGCTCAGGAATTCCTATTACCAGCTGACTGGCCCTTGGTTTGGTCC-CTATAAATACCAGACTGTGTTTCAGAGACCGAGTGGAG-AACACATCAGCTGGATTTTCACTTTAGGG--AGATGTGAAGATACATGGTACCCAAGTGTTCTCATCCCAGACACCCCATCCCTATCCCTGAAAGTGAGCTTC-TCACTTTGGGCCCCAGCTGAG----AGCCGGTCTCTCTGACCTCATAGACTTCTA-GAGGTAAGTGGGAAGAAACCTCTGAGGCTAAACAGAAAGCTGGCTGGTGTTGGGCCAGCCTGCCAATTGGAGTAGCCTGGACAGATGCAG------GAGCTC-AGCAGCCCCAGTGCATGTACCAGAAGGCAGCTTCTCTAGCTTGAGATGCA---AAGGGCTGTGGTGTTCCAGGCCACTTAGCAGCTCAGTCTTAGGCAAGCATAGATGCTCAGGGAGTACACAATGACATGTAGGGGACCAGCCACACCCTTCCATGGATGGGCTTATAGCCAGGTGTGCAGGGAGTCTGTACAAAT--------AAAGCCAAATGTAGAGAAGCTCTGCTTCCTAAACACACC-------GAAGAGGGAGCTGGGCCAAACTGCATGAGTACACACCTTACTGCCTTCTCTCCAGCCTGCCAAACAGTGGCTTATCCCTAAAGGAAGCAGCCCCAACCTGTTCCCCTTAAGG-------------GACTCTGGTCTCC-TTCATGGGATCCATCTTTGCTATGACCCCAGCCCACATACA---CTCCT-GCATCATTGAGAACCCATGGTCCAGCCCTCAGCCTC-----TCACTGGA-------CCCTTTCACATCACCAGCTACCCTGTGGGGGACTGAGCCACATCCTGGTTGAGTACC-------CAAGTCCCCTTACACCAGGCCCTAAGATGTCCTGGTACAGCCTGATCCCAGCCTAGCCAGACAGGCCTCCCCTCTGTGGCCTCCTAGG----------GCAATGTCCCCATGGTTTAAGTCTCCCCTCCCCTCCCTCAGTTTCCATGTGCCATCATTATTTAGTCTTTCTTGCCCCCTTCATCCT-----TCCCTCACCACACTAATCT-----------------------------------GTCTCATGAAATCCC----------------TTCTGGGTTATTCTTGCAATATCCCCTTCTTGCAATCTCCAATGCTTCCCATCCTCTGTGCCACTCCAGGAGAAGAGAACTCTAGAACCTTCTGGGGCTAAACAGATGAAATGGATGTGTAAGGCCATAAAACCAAGAGAGGGTGACAGGCAGTGGGAACTAGAGAGTAAAGGCTCTACTTCaagacagccca---aaaattt
s HiC_scaffold_1 114008739 1412 - 233722169 TCTCTACCAACTTCTT-GAGATTTGAGAATTTCCAAGAGAAAACCTTAGCTGAACTCC---AAGAGGATGCAAGGCCAAGCCATTGTTGCTCCAGA--ACTCCAGTCTGAGGAATTTCCATTCCCAGCTGACTGGCCCTTGGTTTGGCCCTCTATAAATACCACATACTGCTGCAGAGACAAACCAGAGCAACAAACCAGCTGGATTTTCACTTTTGGGGAAAATATGAAGCCACGTAGTATGAAACATTTTTCATCCCAAAC-TCCAATCCCTATGGCCTAAAGTGAGCCTCACCATTCTCAGACACAGTCAGGTAGTGGCCAGGTTCCCCAACTTTACAAACTACTGTGCcttaagaaggaaaaatagctAAATCCCAGACAGAAAAGCGGCTGGTAGTCAGCCAGCCTGAGAGTTAAAG----------AGATGCAGCCTTAAAATTTCTAGTAACTCGGGTTCATTTTCCTGAACACAGCTTCT--GGTTCAAAGAGCACAGAAGGGCCACGGTGCTCCAGGCCA-TTGACAGCTCAGTCCCGGTCAAGCACAGCTGCTCAGGGAGTACATACTGCCATGTAGAGAAGAGGCCACA----------AGTGTACTTTGAGTCAGGTGTGCAAGGATCCCATGCCAGCCCCTCAGAAAAGTCAGGTACCCAGGAGCTCTGCTGCTTTAGCATACCTCGCTCCAGAAGTGGAGCTAAGCCACA-------GATGCAC------------------------------CAATTGTTTAT---TAAAGGAAACATTCTCAATCCATTTTTCCAAAGTTCGCTCCTTCTCTGACTCTGCTGTCCCTTGACGGGGTCCAGTTTTGCTCTTACTTCAACTCTTATACAACATTCCTAGAAGTGGCAAGCACCCATGGCCTTTCCCTAGTTCTCCCCTGTCCCAGGATATGACCCACCTTTACATCATCTACCACTTCCATGGGGGCTGATGCCCTTCCCTTCTGTGCACCAGACTACCAGCTCCTCTTGAACAAGGCCTTTAGATATCCTGCTGTGACTTAGATCTAATGGACCCCCAAAAGCCCTTCATTCAGGGC----TGGGAATGACAGCAGCATTGTCCTATTGGTTTAACGTTTGACTCCTCTCTCTCATCTGtcatgtattatgtttatttgtTCTCTAT--CTCCCTTCACTCTCTGTGTCTATCACTCTGtttctctatctgtctctctctgtctgtctgactctctctctcgTCTCTTGCTGTCCTGCTATGCCTCTAGACTTTCTGGGTGGCTTCTGCaatttttcttc---agaatttcCACTGCTCACCTTCCTCTGTTTCAATACAGGGATTGAGGACTCTAGAATCTTCCGGGTTTAAACAGGTAGCACAGATGTGTGAGGCCACAGAACAAAGGTACAGTGGCATGCTGTGGTCCCTAGAGGGTGAAAACTCCAGCATGAGACatccaaattaaaattt

a score=34672
s chr3           103647486 2141 + 160039680 AAAGAAGACTTTGATAGCCAAGACACCCACTCTAGAAGCTCTGGCCCGCTCCCTGAAGGTCACTTCCTGCTCTCATCTGCCGCT-CTGCACCTAGGCCTCCATGATGGCAGGGTGAGCCATCTGCTTCCCACGACCACATCCCTACTTCTGTCTCCAGATT-----------CAGACAGTTGGCCATGATAGAGAACATCTGTTTATAACCCTGGCTGG--AGACAAACAGGAACACGAGGAA--GTTAGGGCGAGCTGCCCTGGCCTAGCAGCTCTT-TGGATGTTCTCCAAATTTTCCCATCTCCTCCAATCAATCCTCACCTTCCCACAGCCAATAAGCAGTGCACAGGCTCCAAGGGACAGATCCTCGCGGATTTTATGAAGCAGATGCTAGACAACGAGGGTCTGACAGGTACAGAAGGTTAAAGCCAAAGCAAGGGCCTGGGTAGCAAGGGCCCGGGCAGACACTGGTTTTAGCCATGGAGTCTGGAAATGGGAG-TTTAGCTGAGCCTCCACCTCTCAGCATATGAGAAGATATTTTGAGTTGCCCCAAAGCAGCAACCTCTTTCTTGAG-TTCCCAGCTTTCTCCTAGAGAATGTCGCGCAGAT---TCTGCCGAAAGCTTACACAGAGTACCCACCCTAATGGACT----------------ACCAATCTCTTTGTGTCTCCTCTCTTGGTGTGGCACCATTACTATTCTCCACTCCAGGCCGGGCACCTCTGACT-------------------CCTCCCCTCAGCCCAGTTACTCATCAAATTCTAACCATCCCGA--TGGAGAATGTTCCAGACTTGTCCTCATCATCTGGATACCTCAACATGCCTTAGTTTAGGCCTCTT---CATTTTGGCCTTGGGCAGTTTGGGGATTTATTAAGGGATCTGCAGATCTCTGCTGGTCTGCTG-CCTACTCTCAATATTCCCAGCTTAGCCCtctcagccttcctaatgctgagacccttcaatacagctcctccttgtgttgtgttgtggtgacctccaaaccataaaaattattctcactgttacttcatgacCCATGGGTTGAGAACTGCTGTGTTAAATGTTTGAAATTAACCTGTCAGATCTATGGGAAAAAGT---TGAGAGGGTTTTCCTGT----------CAGGACTCTGTCC--ATCTGTGTTCACACAGTCCTAATTGGTGAGCTCTCAGGGAGAAACGCCCAGTGCTATCTTTC--------------TTAGGCTTTGC-CTGTGGCCTGAACACACAGTTCCCTTGAGCCTCATGTACTTGCTTCCTCTATCCGTTCAGACTGCATTTGCCAAACACCCACGCACTTCCAGCTCTCCAGG--------------AGTTTCCTC--ATTCTAGAATGCTCTTCCATCTTGCCTTTGCCCATCAGAACCCATCTTTCTTATTtgctatggttgaacatggtctgtcctctctgatagtcctgcttagtgaagtttcacgtccattgtggccatgtggttaagtgggtcctttgag---agattgagtcatgaggAGGGACTG---TCTTTCTCAC-AGGGTGAACTCATTCTCAAAGCTGTGGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGACCCCCCCAAAagctc-----------------ctcaccagcc----------------------------------------------acagcttcccagtcttaagacattcag-ccccagaatcatgagctgaataaacttactatcataataaattattaagttttaaata-tttggtatagcaatgggaaaatgagcaaagaGAATGTTCTTGCTCAAACATCCCTCCCATGCCTTCCCAGAAGTCTGTATTTTTCAGATCAAAATTAATAGCTCCTTTGTGTTCCT-----CTCTGAGTTTCATGTTTATGTCTTCTTTATAGAGTATTATCTAATTAGGGCCTCTCCCATCAGAG----AGCTGTGGAAGGGCTGAAgtctccatgctgccgagcataagtgcctgccatggaatgggtgcttaacaaatgtttgttcactaaaGAGAACTAGGGAAGCCTGAGCAGATAACTTCTCCTGCAGGTCATATTAGCAGCATCATAAGCCCAAAGTGTCCTGCCCTACACGCAGGGCGCAGAGCTCAGAGCAAGATGTACAAAAAGCAGAGCGAGGGGGTCACTttcaattctctgagtgttggagctgctcttccggtctccagaagtcacttaGAGCTAGGGTGGCTACT-------ATCTACTAATAACACCaatcataccagctgccatctgctgagtgactatgatgtgcc
s HiC_scaffold_1 114024365 2320 - 233722169 aaaaaatgTCTTAACAGA-AAGGCACC-ACTCTGGAAGCTCTGTCCAGGGCCCTGAAGGCCCCCACCCCCTGCCAT-TGCTACTAATGCAGCACAGCCCTGACTACAGCAGGGCGAGCCATCTGCTTTCTGtgaccacagccctgcttctgtCTCCAGAACAAAAGCAGAGGCAGACAACTGATCATGACTGAGAACATCTG-TTATAACA--GGTTGACCGCACAGGCAGGGAtaggaggcaggggcaggggggGTTGCCCTGGCCTGGCAGCTCTTCCAGATTCCCTCCA---CTTGACCTCTCCTTACATCAGTCTTTCCTTTCCCATAGGCAAT-----------AGGCTCCCAGGGACAGATACAGATGCACTTTAAGAAGCAGACTCTAGATGATAGAGGACTGATCAGGACAAAGAGTAAAAAGAAGCTTAAGG-----------------CTAGGAGGACACAAGTTTTAACCACTGAGCCTGAGAATGAGAGACATAACTGAGCCT--ATTTTTCTACccatcagaaaatattttgagctGCCCCAAAGCAATGACCTCTCCCCCAAACTTCCCTCCTCTTTCACAAGCCATCTACTCCAGGTAAATGCATCAAGAACTCACTCAGTGCATCCACCTTCTGAGACTCTTCTCACTCCTGGCCACCGGTTTC--TGTGTCCTCTCTCTTGGTGTGGTACCGTTCACATTTTCACTCCCATGCCCAG--ACTCTGAatcttcctcttcccattcttCCCTCTCCTCAGTGCCAGCCTTCACCATATCCCGTCCAT-TCGACCTACACAATGTTTTCTACCTGTCCCCAC--TTTTGAGACTGTACTGAGCTTTAGCTCAGGCCTTCTACCCATCT--GCTCCAGGTGATGCAGGCATTTACTGAGGAGACTTCAGATCTCTGCTCGTCTCCTTCCCTACACCTTTGGTTCCCAGCCTGACACTCTGGTAC---------CTAAGGgtctttaata-------------tttaatatctaaGTTACATCAAAGAAATACAG--------CAATGTT------tga--aattagcaaagaaatactA---GCAATGTTTGAAATTAAATTGTTAGCTCTATGGAGTTAAATTAATGAAACTGTGTCCAAGTAGTGAAAGAGTGGGATCCAGAGCTGATCTGGGTTTGCATAGTTCTGATTGGTGAGCTCTCTGAAACAGAGATCTGGGGTCCTCTCTCAAGGCCCCATTCCTTCAGACTCCTCACTACGGCATTTGCATGCCGGACCACTGGCCCCTCCATATTCACTTCACCC-TCAACTCAGGCTGTATTTGCCAAACACTTgtacatttttacttttccatGTCCGTGATAAAATTGTTCCCCTCAAATCTTAgaatgtttttccaaatctccTTTGCCCCTGAAAACC-----TTCTCAT--------GCTTCACA---TTTGTCTCCTGCAAAACTCAGGT----TGAAATTGGATTGGTATTATGGTGGC-TAGGTAAATAGGACTTTTGAGAAAAGATTAAGTCATTAAAAGGGACTAATCCCTTTTTCATAAGAGTTAGTtcattcttggggctggggatttagctcagcggcataagcgcctgccttgcaagcaggcagtcgtgagttcgatccctggtaccgataaaaacgaaaaaaagacaaaaaaataaaaaataaataaaaaataaaaaataaaaagagttagtTCATTCTCACAGAGGGGATTAAttctttcaagttgttttttGCAAAGCAAGGCCCACCCCTATGTTTTGTCTCTTCTGTAAGTACTCACTTACCTTTCTGTTTTTCCCCCATGTTATACAATACAAGGCTCTACGTAGAGACAGCTACCCAATCTT-TGACCTTCAGCCCCCATAATCATGGGCTACATAAACTTCTTTTCCTTATAATTGACCCAGTCTTGGTTACTTTGGTACAGTGACAAAAAAGAGA-CTAAGACAACATTCTTACTCACATGTCTCTCTTCTATTTTCCCTGAGTTCTACACCTCCTACGTCAAAATTCATAGCTCTTT----TTCCTATGTCCTGCAAGTCTAGCAGTTTTATCTTCTTC-TAGTACACGTTCCAGGTAGGGTCTCTTCCATCAGAGCAGAGGCTGTTTGAGAGCTGATTGTCTCATGGTACTATGAATAAAT-CCTGGTATACAGTAGGTGCTTATTGAATGCTTGTTGGATAAATAGAAATGTGAATGAATGAGCAGATGAGTTCTA--------CAAGCTAAAATCAACATAATAACAA-------TGACCCAAAATCATTGTGTACCACCCA-----------------------------------------------------------CTGGCCCTGTGGTCTCAAGTGGCCACTCAGGACCAAAATGACCACTAAGTTCCAGTTAATACTAGCATTAATCATAGCAGCCACCATCTGTTAAATAATTATGATGTGTC

a score=50175
s chr3           103649646 1244 + 160039680 ttccatacattactacagtcacttctgctatca--ccggtgagatgttttct-tcagtatcatcctatcacataaatgaggaaacg-----agggaaggaagg-aactttctaagccatggaagaagctaagattccaacttagaagagttgaatcctaaccactccatactgcctccacaagccg-gggctccttctc-------tccacaccCATCAGTCCTGAGCCAGTTGCACAGATGGCAGGTTCATCTCTCGCCAGGGATACCAGAAATCTCACAAAAGAGATGGGGCCCCTGCAGAAAGGACAGATCACTAACCATGTTT-CCCTGCTCTGGTCAGACTACAGGTTCCCTCGCAGACT---AACCCT---------------------TCCCAGAAAGCCTGGCTCTGGCCACTGAGCGTCACTATACGG---TTACAGCTTCTGGTTCATAC--AGCCTCCCTCCTCCCTCAGGGTGGTACCTGGGATATGGTGTCTCTGATG---AAGGATGCGTTCACTATTCTGGCCAGTCCTACCAAGAGGACTTGACTATAAACTGGGCCAGTAGAAAAGGGTAATTAGACAGGATTCTCCTGATGAGGTGGAGGGATCAGCAGGTGTTAGCTCAGAGACCTGGGTCCTGGTGTGCATTTAATTAAGTATCACCATTCAGTTCACACATTGGCTGCCAAGGCTTGGGATGGGGGGAAGAGCCCAGCCAACCTCTTTTCTTATAAACCCCGGTGGGAACAGAGAGAAGAAGACTGCCTGCAACCCCCTACC-CCCAAATCAACAAGACAAAAACAG--AGCAGCCAGAAGCTGAGCT------TGTTC--AGCCCTTGATTACTAAAAAGAACAACTAAAAGAGAACAGAGAGAACCCTGGGGAGACAG-GCTCCAGACT-TCCAGGCAAACAAAAGGCTCAGAGGAATGGAAAGGCATGCCTGAAAATCAGTTAGGCAGTAGCTTCCAGTCATCCCATCTAAGTCCTAACAAGACGCCTGTTCTGAGATAACAAAGGCCACTGTGTTTAATGAAGGGTATAAATGGTAGAAATATGAGACAGGAGCTTTTGCAAGCTGTTAATGAGGTGGATGGGGAACCTCTAAAAATAGGCCAGGGAAAGTTGAAAGGGTAATTAGGGGTGCAAAAATAAACAGAGGGTGTCAAGTTGAAAAAAGTTCAAGGCAAAGTCCCCTCTAACATGTCTGCAGTAGGTAGTGCAGGAAAGG--GGTAAGGCGGAGAACATAGAACACACATCCTCCCAACTGACACTAGACTAAGAATG
s HiC_scaffold_1 114027149 1235 - 233722169 ttacatatattatctcattgagTTCTGCCACCAACCCTACAAGGTAAGTGCTGTGGGTATCATTTTATTAGATGAATGAAGAAACACACTAAGAGAGGTAGGGTAACTTGCCCA----------AGGCCAAG-----------GAAGACTCTGACCCCAACTATTC--TACTGTGCCTGGGGGCTGTGGGCACCACCTCAGCCTTTGCCCCACTGGTCTTTACTGGGCCAACAGCACAGATGAGAAGTTCATCTCTTGCCAGGGACACTATGAGCCCCACAAGGCAGAGGGGGCCTACACACAAAGGACAGACCACCAACCGGGCTGACCCTGCCCTGACCAAAGCACAGATTCCTCCATAGGCCTGCAACCCTGACCTGAAATTCTCCTTTCTGCCCCAGAAACATGGGCCCAGGCCTCTGAACATCAACAGACTGAAAGTGCATCTTCTGCCCCCTACCAAGCATCCTTTC-ACTGCAGAGTGGTCCCTGGGATCAGGTATATCTGATGTTCATGAATGCTTTCAATATGTTGGTTGGTCCCACTAGGGTGGTTTGAATATAAACTGGGCCAGCAGGAAAGAGTAATTAGGCAGTACTCTCCTGATGAGGTGGGAGGATGAACAGGTGTAAGCTCAGGGATCTTGTTCCTGGTGTGCGCTTAATTAAGTATCACTGTTCTGTTCACACACTCGATGCCAAAACTTGGGA-------AAAATCCCAGCCAAACTCTTTCCTTATTACTCCTGATAGGAG----GCCAAGAA-------TGCAGTGCTCTCCCACCCACATCAAGGAAACAAGACAAATCAGCAGCCAGAAGTCTAACCCTTCTGTGTTCCGAGCCCTTGATTG-TGAAAAGAACAACCAAAGGGGAACAGAGAGAATCCTGGGGAGACAGAGCTCTAGACAACCCAGGCAGACAAAAGGGT----------------------TGGAAATCAGTTAGGCAACAGCTTCCAGTCATCCCATTTAAATTCTAACAAGGCCCGTATTCTGAGATAACAAAGGCCACTGTGTTTAATTAAGGGTATAAATGGTAGAAATATGAGACAGGAGCTTTTACGAGCTGTTAATGAGGTGGATGAGAAACCTCTAAAAATAAACCAGGGCAAGTTAAAAGGGTAATTAGGGGTGCAAAAATAAACA----GTGTCAAGTTGAAAGAAGTTCTCTGCAAAGGCTCCTCCAACATGTCCTCAG-AGGTAGGGCAACTAGAGACAGTCCCCCAAGAAACCAGATACACACATCCTGTTAACTTGCCTTA----AAGAATG

a score=7815
s chr3           103653252 339 + 160039680 AGGCCTCCAGCCCAGGTCCCACAGCTGTGGCACTACAGAGGGAGATGTTTATGCGATACATAGAGTTGGCCTTCCAGCATCCCTGGACAAGACAAAGAATACAAGCCTGTCATTTTGTTTCTGCTACTCACTTGCCTGACACACAGCACCTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCTTTTCTC----------TTTCAGGGATGCTTTTGTCTAACTTGATCACGTTTATAACTTCAAGCCACACCTCTTCTCCCCACAGTCGGCAACTTGAAGGTATAGTCTGCCTTTCGGTTCAGAGGCAGTGGGTGTCAGGAAGTCATCACAA---------------------------TATTCAAATTAGGTCCATTCCTCTTTT-ATTCTGTGAGATTCT
s HiC_scaffold_1 114029966 563 - 233722169 AGCTCTCCATCCCAGGTCCTATAGCTGTGGCACTATAGAGGGAAAGGACAATGTGATATATAAAGTTATCCCTCCAACATCACTGAACTGGAC-AATAATGGAAGCCTGTCAGTTTCATTCTACTGCTTGCCTGTCTCAC-CATGGTACCTCGgtttacaaacttaattcattttatgattctggggaagaaggccacatttgtgtttgtgtggggaggATGGGCATAGTTGTGTTTGCCATCCAATGTGAGTAtctgcaaacaaaagaaaaattttgccaagtgtttttgtttgtgaaccaaattgtttgcaaacaggaGCCTTTGTGAATCAGGGCATTACTGTGTAACCTTTTTCCTATTCAGAATTTTCAAAGACACTTCCATTTAACTTGATCACATTTGCAACTACAAATCACACA---TCTCCTCACA---GGAAACCTGAACTCATATTTCACATCTC-TTTCAAAGACAGCAGGTGTCATGAGGTCACCTCAAATGTTGCTTGCCTGCCCTAGAAACCAGTGTTCAAATTACGTCTATTCCTCTTTTAATTCTATGAGATCCT

a score=33712
s chr3           103653598  971 + 160039680 TCTGTCTTCAGTTTGTGAAGCAAACGATACATTTAACCTTGGCCATACCCC-AGCATCCAGCACAGC-GCAAGAGCAAGGAGGCAGAATTTAAAACAGTTGTCTGCATAGGAAAAAAACA-AAGAAAGAA-GAGCTCTTTAGTAACAAATAACAACACCACAGTGTTTCCAATCAAGTACACATTAAATACGACCTCTGCAAAGAGCCTTGGCTGGCTCTGTAAGGACCGTGTCCTTGGGATACTGT------------CTGCTCTTAATAGTCGAAATAAATTTTGAGTACCATACCCATAAATTTCCTGCTGTTTAAAATGTAGGATTAGCTTCTTCAACCTGACTTTTCTTCTCTCAAACAGTGATGCCATATTATATATGAG--ATGTAGCTGACAGGCACGGGGT---------CCGATCTGCCTCTCAT---CCATAGTCTAACCTTAGCT-----ACTTCAT--------GGAAAGGAGCCTTATTGTTCTATGGGAAAAGCAGAATAGGAAGTATCTCGGAGAAGCCT-TTGAGGTACTGTATCCC----GGCATCTTCTCCTCCCCAACAGTCCTTTCCCAATGGCCC-AATATCTATCTTTGTCAATCAGGGATTTAGCATTGGCACTAGAAACTCAATGAGACAGAAAATTAGGACTAGACCACAGTTTAGCAAGGACCATTAGTTTCTGAACTTGACTCTCCGTAATCAGATGGCTCCAGCTCCAGACAGTATGAGCTCTTTGCACCAAAATTATATAATCACCATG--CCCTTCTTATCTGCTGATAGACGGGCCTTCCAGAGAG-AACCTGCCTCTCTTCTG-TAGCCTTTAGCTAAAGTCATACACAGCAAATAGTCTGCATCCTCTGTTAATTCAGCCGCCAGGCCTCCCGTGGATTTAC------CTACGCGTTTGATCTGAGTTTCCAGGGCTTATATATGTCTATTATTTGTTTTGTCACCAAAAATCACAGGCTGCAAACCTCCTGTCCTGTAGT-ATGCTTTTGTTATAT
s HiC_scaffold_1 114031436 1021 - 233722169 TCTACATATAATCTATGCACTGCATGCTAAATTTAACCTTGGCCACACCTCTACCATCTAACAGTGTAGCAAACACTAGGAGACAAAAGAGAATAGGAtcatttgcttaaaaaaaaaatagaagacagaaagagatcTCTAGGATAAAAT--CTATAGTATAGTCTCCCCAA----GTATATATCAAACGCTGAAGGTACAAAGGACTCTGG-TATCACTATGAGGTCATTGTCCTTGGGATGCTGTTCTTAATGTTGCCTGTTCTTAAT-GTTGAAATGAGTTATGGAAACCAGGCTCATAAATTTTCTGTTGTTTACAATCTAGGATAGGCTTCTTCAATATGACTTTCCTGCTGTTAATGACTGATACCACATTATATAAAAGGAATATAGACAATAAACTCTGGGTATCCCTTTTTTAATCTGTCTTTCATTACCCATGTCTCAGCCCTAGCTCTGAGGCCTCCTTCTCAGTGGGAAAGGATCACT--TGTTTTATGTGGAAAGTGGAGTGAAAAACACACTGGAGGAGCTTACGGGGGTGTCATGTCCCCAGAAACTCCTCCTTTTCCCTAACAGTCCTTTCTCAATTGCATGAATATCCGTCTTTGTCAATAAAAGATTAAATGTGGGCACTAGAAACTCAATGAGACAGAAAATTAGGACTAGACCACTGTTTGTCAAAGACCATTAGTTTCTGAACTTAGTGCTAAGTAATCAGTGAGCTTCAGCTGTAAGCAAAATGGGCTTCCTGCACCAAAATTACATAAtcaccctgatttttttttatttgctgatAAACAGACATTCTGGGTAGAAAACTATCTCTTTCTTGCTGACCTTTAGCTACAACCATAAGCCATAAATAATCTTCTTCCTCTTTGCATTTAACCATCAATTCTCCTAAAGTTTCACCCTTTGCTATGCATGTGATTTGGGTCCCAAGGGATTGCAGGTGACAGTTATTTGTTATTCCCCTAAAAATCACAGATTGTAAATTTCCCAtcctgttataattttttttttatat

a score=38474
s chr3           103657307 996 + 160039680 actggacctgctggatgggtcaCCCCGTAGTTGGTAAGCAAGTCCCCATCTTTGGTAGCAGAGAAAGGATAAGAAGTGCTGTGCTCCAGAGAAAGGT-TGCTGTGTGGGGTGGAATCTGAGACCCTAACTCAGAAGATATTGACGGTGTTAGGAAGACAGTGGAGAGCCTGTTGCAAGAGCTTGTAACTGCCACTTGCACAAAAGCAAAGGGGGTAACT--GTGTTCATACCATTA-ACTAGCCATGATGGTCCTTAAGTGGTGATTTATGATGTTCCTAATGGCAGTGCACATGGCCAGGGTTGAGTGGGGATTAGGAACAACACAGCGGGCTCAGTGAGTAGCTAAAAAATCATTGGCCAGCGAAAAGTTAGGTACAGGGTGACCTGATTTTCTAGAGAACAGCATGACAAGGTAGGCCAAGCAGAGGGAGGAAATCGAGGGTCAGGGTGGCTGACAGAATAAATACAGAACGGATTAA-ACAGCAGCTGCCTGTGAGGGGTGAGGATCCGTTGGTCTCACGGTGCTATTCCAGCTATCTGTATTCCATCAGTGCCACTCAGAGCCTCCCCACC---TAATCAATAAGACCACCGCTG---CTGTTGTTCTTTTTATTATTATTCTAGTGCTAGGAAATCAGAGTGTGTTAG------TAACAAAAGTGCTTCCCATGCAGGGGTGGAGAGCCTCAGGGGGAAAAGACATTA----ATTAAATAAGGTTATGTCCAGGAAACCTAA-GCACTGGCAGGTGCGTGGTGACAGATGCAAACCTCCATTTGTATCAGCAGTTGTCCAGATAGGAGAAGAAAGACAACACCAAAAACAAACGGCTTACCAATAGACAGGCTTGCCCATAAGTAGATCTCCAGCAGGCTGAAGTTCCTCTGCTGGGTCCAATACTTAAGGCTGAATTAAAGCTTCCTAAATGCTGACATAGTCATTCTACAGATAAACATGTGTTTGCATAATTGATCTAACCACGAGTTAAATTTAAGACCCGTGTTTCT
s HiC_scaffold_1 114034538 981 - 233722169 ATTGGATC--CTGATGGGGAAATTCCATGGCTAGAGAGCAGGTAACAATATATGCGAGCAgtaaaaacacaagaatgagaatGTTCTAAACAAAAATATGCTGTGAATAGTGAGATTTGAGATCCTAACTCAGGAGATTCTAAAGATACTAGGAAGACAATCAGGAACCTGTTCCAGGAGCTTGTAGATGCTATTTGGACACAAG-GGAGCAGATGACTTTGTGTTTAAATCATCAGAGTGGATATTATAATCCTTAAGTG----------ATGTCTCTAATAGGAATGCACCTC-CCTGGGCTGAGCAAGGGTTAGACACAACACAGTAAGCTCAGTGAGTGACTAAAAA-TCATTGACTGGGGAAAAGTTAAGTACAGGGTGACCTGATTTTCTAAAGAACAGCATGACAAGGTAGGCCaagcaaaaggaagaaatcaagggTCAGGAAGGATGatagaataaacaca-aatgaatcaaTACAGCTGCCACCTGTGGGGGGT-AAGATCTGCTCATCCCAC---ACAGTACCTCTCAGCTCTACCCCA--AGTACTACTCAGAGCTTTCTCTCCTGGTGATCAGTAAGAGCACCgttgtcattgttgttgcttttattattattatagagTCCAGAGATCATAATAtgcaagcaacaacaacaaaaaggtttcacacacaga---aagaaaacttAGGCAAAAAAGAGTTGACTCTATTCAATAAGATTATCCCTGGGAAACCCAAGGCATTGACAGATCCATAGTGACAGATGTACATCTTCAATTTGTTCACAAGttgtactgaaagaaaaagaatg---------aaaacaaatagc-tACCAACAAATAGCTTTGCCTGTGGGCACATCTCAGACAGGCAGGAATTCCTTTGCTGGGTCTAGTACTTGTAGCTGAA-TGAAGCTCCTTAAGTGCTGACATAGTGTTTCAACAACTAAATATGTGTTAGCATAATTGATTGAACCAAGAG-TAAATTTAAAGTCTGTATTTCT

a score=34648
s chr3           103667056 1525 + 160039680 CCACCCAGCCAGAGACACTGAAGTCTGCCAGGGGATAATGTGGGGACCTGGCTAAGCTGAGAGAGACCAGATCACAAGTTCCTCTAGCTGCCAGCTTCAGAAATGCATGCAATGACCAGGACTAGTGACCCAAGATGGAGCCCAGAGACTCCAGATACCCTGGG----------CTCTGGCACATGATT---------CAGAAGGAGTGGACAAGTCAGTATGAGTGAGGGGTAAGCTCAGAAGGAGGGGGGGAGCAAGCATTTCCATGCAGCAAGACTGGATGCATCCCACAGGTGTTGCTTAGCTTGTTGTCTTGTTGTGAACTGAATCGTGATTTTTGCCGCCAGCTACCCCAAGGCTAGAGAAAAACCAGAGATCCCAATTCTCTGTGGATTTCCAA---------------------------------------------GGCATGAGTG---------------------------------------------------------------------------------TTATGACCTTGATACAAC---TTGTGCTGCTGTTTTAGTGGATACAAT-------------CCTCGGTTTCCAGGAATTGCTCTCCCCACCCACAGAGCCATCCGA----------------------CAGAGGCC---------------------CCTTCAGCCCCACGGATGA-TGTCTCAGAGTGGACACATGGC-----TCAAAGCCATCCGAAC------------ATCTGAAAACTAGAGGGCAAGAAAGATGAGCTATCTGATTCTAACACACATTCATGAGCCTTTTCCAGAGCAGAGTCCCACAGTGGG-GATCACAGCTCCCTG--CAGTCTCCCACC-TCCCTaaatgcaagtgtgtgtgtgagcattctgtatgcaatgaatgaccttctacatttgtgccatgcacttt---agatgcgagaaaaactatttttatgtaactggctaaatcatcactagggttactaaaagttagaatacggaaaggaaaatgattattgtcagagtcccctaagaactctaatt-----tggta----------ttctgctaagtgccacagctggcgatgaggggtactctccctgcgtgcaggctcacagatagctgggactcctacagtctggggtaatggcatattattgtcagtgcttccaacagtgcagttcggaatcaactgtgagctttggtaggttaatggcattggccttcaattaaaatctgcattcactgtaaatcactctgaatttggttttatgtttatttacctttataattttcagtttaatttg-ttatg-gttgttttgtatcgtgatccttggggcctataatttgttaatgactagactttgaaac----cgttatgtttcaaataaggatcagcctgccccacgaatgcatatgtgtatatctccctctttacaactggattaatgtggtgataattcaagtagcatgggactttttttttcacctct-gaaatttggggtgattgaaaggtttcaaggttcttgttgttcttcagtgggtcacagtgaaaaaTCCAAGGCCTCTAGCCTCGAAGGAGGACTCACAAATACCTGAACATGAAGATCTGCCCTAACTCTCCTTCTTGCAGACACCTCATTAGTCAGCTAATGACGAGGCTGTAGTCAGAGAGGAATATATATATGATGATGGGCCCATTAGGTTATAATGGAGCTGACAAATTCTCATCACATA
s HiC_scaffold_1 114047572 1693 - 233722169 CTGCCTAGCCAGGAACTCCATGGTTTGCCAAGGAATAATACAAGGCCTTGAC-AGGTTGAGAAAAACCAGATCACAAATCCCTTTGGCTGCCTGCTTTGGAGGCTCATGCAGTAGTTGCCACTAGGGA--CAAGA--GAGCC--------CTAGAGACACTGGGAAGATGGAACCCCCATCATGTGACTGCAGGTAGCCACAGGGGTTGG--------GGGTGAGTGAACAGAAGGCTCTGAAATTCAGAG---ATGAGTATTTTTACATAGAAAGATTGAATATTTCCTAGAAATATTA-TTATATCGTTGTCCTGGGTTGAACTGAATCTAGATTTT--CTTCCACCTACCCCAAAGCTCGGGATAAAATGGAGGTTCTGATTCTTTTTGGATTTCCCAGTTAGGATAAAAGCTTtactactggggctggggatttagctcagtggcataagcgcctgccttgcaaacaggtagttgtgagttcgatccctggtactgataaaaacgaaaaagacaaaaaaaaaaaaaaaaagctttactaCTTGGATACAATACATTCTATTGCTATTTTAGCAAACACTATTATCTATGGAGTCCCTTTGTTTCCAGAAATTGTCCTCCCCGACCACAGATCAATGCCAGTAAATACCACATATTTCTATTTGGAGGCCCTGCCTCCTCTCTTCCCCACACCCTCAAACCTGTGAATGATTGGTGTAGAGTGGACATGCAGCTCCAATCAGAACTATCAGAATTTCTGCCTTGGaatttggagatttcagtccaaggAAGATGAACTGTTAGTTGCTGAGACATGTTTATG-GAAATTTCCAGAGCAGTGACTCCCAAAGGACTAGGACAACTCCTTGGTGAGTCTCAAACCATCCCAAAAGGCATGTGTTTACATGAACATTAT-TATGT-GTGAATTATCTT-TATACTTAATCTGTACATTTTTACAAAT-CATGAAGGAGTGTTTTC---TAA-TGATCAGGTGGTCATTAGGTTTGCTAAAAGTTAGAATATCTTAACTAAAGTGATTGTCATAAGAATATCCCAAGATCTCTAATTGGCTGTGGTACTGAGGAGGCTTCTGC--AGGGTCATGACCAGCGGTGAGCTGGCCTCTCACAGTGCACAGGCTCCCAGGCAGCTGGAATCCCTGAAGCTTGAGGTTG--------CACTGTCAGTgct----acaaaacatttt--------ttttttattttgaaagcttaATTATATTGATCATCAATTATAAATTACATTACTTGTAAATTTCTGTAAAATTGCCTTCCTCATTATTTGGTTTTATAATCATCAATTTAGTTTGTTTGTGAGTTATTGTGTATAGTGATCCTTTGGGCCTACAATTT---------TGGACTTTGAAACTATGCACTACAGTTCACATAAATATCATCCTGCCCCAT--AGGCATACATGCATTTTCCC----TTGCAATTGTATGAGTAAGGAGATAAATCATGTAATATAGA--TATTTTTTTGGCCTCTGGAAATTGAGAATATTTAAAAGGTTTCAAAGTTTTTGTGATTCTTCA--TGGTCACAGTGAAAAGTCTACAACCTCTACTCCAGAGAAAAGATCCATGAATA-TTGAGCCTCAAGAGTTTCCCTGGTTTTCACCTTTAGTGACACCTCATGAGTCAATGAACAGCAACATTTAAGTCCACAAAAGGC-----TATGATGGTAGTCCCCTATGATTATAATGGAACTAAAAAATTCTAATTGCACA

a score=57136
s chr3           103671653 1816 + 160039680 AACACTGGTGTAGTATGGATTGCTCTTTCTAAAATACTTTAGCGTCTAAACTGAGACAAAAGTCAAGTAGATAAGCC---------------ACATCCTAGTCTCACTGCTCAGATCACCAACCACAGCCAGGGCTGTTTACCCAGTGGTA----CCTCTCATAAGGATACTCAAGACAA-TGGAAGAAAAATTTCCCTCTGCTCCAC------------Aggaatcaagggtgaaaggaggaagagagaccatt--gggaggagacagctgtagcccagacaagagtttgtagtagcttcttcattggtgaggtggccatgattg----------tgggttgggagcagatttga--gacacaaggtcttggacttggtaaagggatggaaactggtggtgagagagaaaggcagcaaggacagctttcaagtttatgtagcttgaacagcttggtgtggtgtggtgtgccactcaccaagacagaaaacactgggtaa-aaatgtttgaaatgggggtagcggtggtggaaatcaa-gagtttccctctgaatttgtga--------tgtccaagagacattctgtagacgagatgtcaatta-caggctgaatatgccagtcaggagttcagcagagaagttggctttggaaatggaaatgtgtgagtcaCT----------------------GCCAAGGAAAGGGTTAGAACCACCTACAGAGAGAAGGTGGATTCTGGCCCTTCCAGGCT-TCCTCCACACAGCCCTCCACCAGTCTGGTCATCTAAGATGCACATTTAATCCTGGCAGTCTGCTTCAAATTACCCAGTCGCACTCAAAGATTTTATTTTTCCTTTCCTCCTGGTGAGATGAAATTTTACTAAAATTTTGTTTAAACTGCAAAAGAAAAGCTGTGTTAACACGTTGTACATTGACCTAGTTTCTCAGAAGAAATTATATAGCACTGATTAAAAGCCAGTACAATATTTGGAAAGTTAAGGAGAAACAGAGAACGCAAAGAAAAAAAAATAATGAAGGCAAGCGGATAATTCAATTATTGCAAATGTGTTGCTTTTAACATTACTTTCTCAAAGTAGCTAAGATAATTCATATACTTGGCTTAACATTTTAATTGCTTGGAAGgccactggctaactgtgtgaccttgtaaaccgtgttgaccgccgc-tgtctcctcttgcttttcctgtaagatgaggataatgatgtttgcactggttctctgcaaaggttgctgagagggccagaggagataacagaaa-tacaaacacCAGGACCGCTTACCAGCGG-GGGGAGGCTGTAAGCTCCTTAAGTTGGAGGATTGTGACCTGCTATGCTTCTGTCCTCTCTGCCCGGAGGAGTGCATGGAGCTTATCGTGGGA----TACTATCAGAGAAAGGGAACACACTGCAAGTGCTCCTTATTGCCTCCAGGATCAACCTCAGTTGGCTTTCCCTACAA--AGAGTCTAAGATTGGGACCCTAATGCAACACTGTTTATGAGGTTATCTGGAATGAAGGGGCAGGGG-AC----AGGAAGAGACCAAGAGAAAA-------------TGCAGTGGAGAC------------GATGGAgg-gaccgagtccgtgagaagcttg-tgagtcatttctcaaactgcccacctaaaaggcaggttgcc-gaacattcacctaccagcttcagtctcttccctgaatgagcttgcccTGGAATATGTTGATCAACC-TCCTCTCCCCAAAATGAGCATTTCCTGTGGCTTTGCTGATACTAAGAGGCAGCAGACGGGATGTGCTTGGCATGGAACCTCTT---GGGTACTA------AGGTACCCAA-------CAACACGGCAGCAGCTGGCATCAGAGGTAGACAAGATGT-----GATGTGGTCACCCAAAGCTGCTTGCTACAAAAACC
s HiC_scaffold_1 114051318 1904 - 233722169 AACACTGCCACAGtgtg-attattcttta-aaaacatatatgCATCCCATC-GTGAAAGAAGACAAGTAGATGAGCCGTGCATGTTTATTCCATGTCCTAAACTCACCACTCAAGTCACTGAGAAAAGCCAGAGCT--TCAACCAGTGGAGGGGTTTCCACATGGGAGCA-TGAagacaaagggaaggaaaatCTCCCTTCACCCCACCTCTGCCTCTACAGGAAGCAGCAGCCAAAGGAGGGTGAGAGGTCTTTTTAAGAGAGCACAACCATAGTCTGGATAGA----TATGACAGTGGCCTGACTGGTAGGGTGGCCAAGATGGGAGGAATAAATGGATCTGAGATAAGTTCAAAAGATACAAGTTGCCAGATTTGCTAATTGAACAGATACAGAGTATGagacagaaaag-ataaagaacaaTATCCAGATTTCT--CATATGAAT-GCTAGGTGTGGTGGG---TGTCACTTACCAATAGCCAAAACACTGGGAAAGAAACAGTT----TGGGAAAAGCA----TGGAAATAAAAGAGTTTTGTTCTGGTCATGGGAAGACTGAATGCCTCTAAGACAACCAG--GTAAAGATGTCAATTAGAAGGCTGGAGCTGCCAACTGCGAGCTCAGAAGAAAAGCTGGGGCTGGAGAAGTAA---TGTGAGTCAGCAAGCATAAAGCTGTTATTTAAAGCCATGGAAAGGGCAAGAACCACCTAGGAAAGGAATGTAAAATCCTGCTCTCCCAAGCTCTCCTCCATATTGCCCTCCACCACACTAGTCTTAGAAAATGCAAAGCCGATCATGGTGTTCAGCTTAAAATTATGCAAAGGCAttcaaagagatt-tttttcccttcttctt---------aaATTCtactaaaattttgtttaaactgCAAAAGGAAAGCTGTGTTAACACATTGTATGTTGACCTAgtttcacagaagaaattatatAGCACCGATTAAGAGCCAGTACAATATTTGGAAAGTTAAGGAGAAACagagaatgcaaagaaaaaa---taatgaaggcaAGTGAATAATTAAATTATTGCTAATGCATTGCTTTTAACATTACTTTCTCAGAGTTATCAAGATAATTCATATATGCAGCCAGAGATTTTAATTGCTTAAAAGGCCACTCACTAGCTGGGTGACCTTGTGAGCTGCTTTGACTTTTTTATGTCTCATTTTGCATTTCCTTTAAGGTGGGGATAATGAGGTTAGCACTACTTTCCTAGAAAGGTTGCTGAGAGGACCAAATGAGCTAATGGGAACTACAAATACTTGAAAAGTttacaggaggaggaggagttatAGACCCCTTAAATTCAGGAACTGTGATATAATATGCTTATGTCCTCTCTACTC--AGCAGTGCCT-GAGTTCAttatagtattattattattagaaagagaaaaaattattccaGGGCTCCCTACTGCCT-CAGAATAAATATCAGTTGGGTTCCCCTGAGAGCATAGTCTAAGATTAAGACTTGAACA-GACAGAATGTGTGAGGTTATCTAGAAAGCAAGGGTAAGAGCACAGTGAGAAGGAGACACAGAGAAGAAGACACTGCATGGTATAATAGGGACACCACTACTGAAGATGGGGGTGATCAATTCTGGGAGATGATCACTGAGCCA-CTCTGACACTGTGCACCTGAGAGACAGGAGGCTAGAACATTCGTTCATCAGCTCCAGCCCCTCCACT-CATGAGGTTGTCCTTCGACA-----GTCAACCGTTCTCCCCGCCAAGTGGGGCATCTCTGTCACCTCAGAGATGCCCAGAAGCAGAAGATGGAGGAGGCTTGGTGTGGAACCTGTCAGGGGGGATCACCTTGCGAGTGCTCAACACTCTCCACCACCACAGCAGCAAAAGCCAGAGGGAGCCAAAGAGTCTTAAAATG-AGTTGGCAAAAGCTGTCCCCTGCAAGACCC

a score=71231
s chr3           103682097 2915 + 160039680 GGTCTTCTT------AGCACTCAGTTC-TCAGCTGAGAACAACTCCTGTGTGTTGAGGGAGG---------AGGCACAGGAATTGTTTCCACTGTATTTCTGGGTTTCCCTACAACAAATGCTACAGTCTGCTTTTCCCTGGATGACCTGAAAGTAAACACTGTTGGCTACAAAAACAACCAAATTCCTTCCAGAG-------CCTAGGATAGATAAGGAATGCACAGCATTCCCGTTAACACAGCCTTGATCCTACT--TTGGGAAAT---TATCC---CCATCTTATGCTACAGGGACATT---TGCATCGTGATCAG---------------------------------------------CTTAGTTTTTAGTGCCACGTATCACCCTGTTAGCCCAAAAAGGCTTCCACCTGAAGCAGAAGGCTAATGATGCCGCTCCCTTGGCACAGTCTCCCTCTCCACAAGTTCTCCTTCACTAATAGTTGTTTTTCTTGCTGCACATCCCAACATGCGCGTCCATCTTCCTACTGTGAAGCT-CAGCCCCTTGTGGGAACTCCCACTCAGCCTTGTTTTCCAGCCTGTGAGGCACTGTTTGGTCTCAACTCACTGCACAAATGACTAACACTTCCTAAACTCAGAGATGAATCAGCCAGGTTACCAGCTCCTGCCATCCTTCACACAGGCCCGCTGACCTCCTCCAGTGTCAAATGCAGTGCAGCGCAGCCCAGCTCAGCCTGGCCCTGGTTTCCTGGAAATGCAAAT--GCATCTTGTCCCTGTCTGCCCACCCAGAATGTACTCAAGCCCACATTTCCAG-ACCAGGGCATCCCAGGTTTGGGTTTTTCCCTTCTTATTTTGCTTTTACTCTTTTGCTGTACAGCACTAATGAAGCCATCTTCTGCAATGTTCAATCCCCATGTCTGACTATAAC--AAGATCTGCCCACAACTGAGCAATACAACACACCCCCACATCCCATAGAGAACCTTTGCAATCTATTATATTGTGACACCACAGTTCTCTAAAAAAAATTTTTTTAAACACACAATAACAACAAATAAAATTCCTTCCAGGGAAAGAGAAAGCTCACTCCCACTTCACAGACACCCCCTTCTCCCCCCCCCCCCCCCGTGAGAATTAAT-CTACCTAAATCTCAAAGCCTCAAAGTTC-TGGGCCTAGCCAATAGCCAAGCGCCTGTAATGGGCTCCCCAGCTCACCCCACCTCACCATCCGCCCCAATTTCTTCAATCTGCTCAGCAACCAGAGCCATTAAATCTAGAAAACTAATTTGCAAGGAAAACAA-TGAAAAGGGCAATAGTTTCTCGGTCGGATTCTAATGTAAAGTCCCACCAGGACTGGAGCGTTGTAAAGCCCGGGGAGGGGTGCCTGGAGAGAACCAACGATTAACACTCAAAGCCCCAGCGCTTCGGAAGCTGACCCGATGCAAAATGGAAATCTGCCCTATCCCACGGGGGCCAGCACTCAGGTTCACATTATTTATCCTGCAAACCGAGTTGCTAATAGCAAGCAATCACCGGCTTGCTCCCCCGCAGATCAGGGGGAGCCTGCAGAGTTTGCAGAGCCATCCCAGGACACCTGTCTGGGTTACTTAGGAGCGGTGCTGTTCGGGAAAGGGAAAGGCAGGGAATAAAGCTGGAGAGTGGGAG-GAGAGGACGAGCCAGAAAGGCC--AGGAGGGGCTGAGCCGCAGGGAACGCAGCTGGTGGTCTTTGCCCAGCCCCTATAG--ACAGCTGACCTTGGTGTGTGTCGGGGTGGGGGTGGGGGTCGACTCTG---CCATGGTCTGTTCCCCAGGGATGGGGGT--GGCACTCGGAGATTGGT--AGATTCACCTTGAGTCATCCAATGAGTCACTAGCAGAGGGCAGAAATAGATCTTATGAGCCACTGTTC-TTGTCACAG----CATCTTGTTTCTGCAACCAAGACTCCTAGGAGGGGAGGGATCAGAGTGCTGC-ACACAGCCAGGCTGGTTCATTTGATGAGAGGACTTCTTCCCAAGTCTGCTCCCATTCCCAAGG----GAAGTGA----TTAAGAGCCAAGAAC--CAAATCAAATTCTCTGGCCAAGTCAGGCACTCTCTTCACATCAAGTACAC--CTGTTAGCCATCCCTACCGAGCAACGTCAAGTCCAGCTGGGATCCTCAGCTCTCGTGGGAAGCACACGCATCCGGGAAAGTTTTCTCTTTCCTCTTAACTTGTAGTCTTTTAGGGCTTAGGACAGAAATACAGCTGTCTACCTGACATCCCATACCTTCAGCCCAATGTCTTCAGAAAGCAGATGTAATCTTGTTAGGTACCCATTCATGGCTTTGTACtgtttggaaacttagcctttattattattcaagtacagttggctttggaaaaaatagtttgttctcagtt-------ttcaagaaaaaagcaatctgccacactatccagagccacatggggacacctatgggcattcaggaataggtaggaacagaggggagtccccctaaagtcctctgcagtat------ggacccattgagtaaccaggtgtagaattaacta--------catttcagcttaagctggagcctagacactgttcccagttgcc---------tcctggctgaccgtgaggagattagagcaggtggagggaggtccaaggtgtgaaagcctgatttttaaaaaagtattttggaacatggactctgcattggctgatt-tgtgcacaaacaga--------cctgagcaagcagtttacggtgtctgataactgagtggtcatagaaggaaaggtttccaagagacagcaaagccccctggggacaaggcatTTGTCAAAAGAACATCACAGG-------TGCTGCAATTACCTTTGTAGATGCTGCAACCATTTTATGACCCTAAGAGA-AACCAGTTCTGGAGAAACTAACACCAGCAC------------AGTCCCTAGGCCCAGC--CTCTGA------TGTTCTCACACCATGAGCTAGCAATTGCCTTCCTGCTTCAGCTGCTTCTAGTCCATCAGTATTCTAT-----ACTAAAAATACCCTAAG
s HiC_scaffold_1 114056301 2809 - 233722169 GGTCTTCCTCTAATCAGGACTCTGCTAATCAGCTGAGACCCACACGTATGTGTC-AGGTAGGCATGATGACAGACAAAGGG--TGTTTCAACCTCATTTCGG-------------CAAATGCTGCAGTCTGTTTTTCCCTGAGTGACCTGAAAGGAAACACCCTTCAGTACAGCAATAATTAATTTTCATCCAAAGAAGGCAATCATGAATATGTAAAGAGTGCATATTCTTCCCATTAACACAGCTTTGACCCTGctgtttaagaaataattattcttGCCTTATTATGCTGAAGGACCACTACCTTCTTTCTGgccaatatttttttctctctttctttctttctttctttctttctttctttctttctttctttctttaagcaTCTCCCTGTTAACCTAAAAAGTCTTCAGCCTGAATCCAGAGACTAATTGTACCATCTCCCTGGCATACTTCC-------------TCTGATCCTCAAATAGTTGTTTTTCTTGCTATTTATCCCACC------GTCCA-CTTCCCACTTCGAAGCTTCAGTCCTTTGTGGGAACTCCCACTCAGTAGCAGTTTCCAGCTTG-AAGGCACTGCTTAGTCTCAGCCCCCTGTAGAGATGACTAACGCATCCTAAAGCCAAAGATGAATCACTCAGGTTACCAGCTCGCACCAATTATCTCACAGATTCTATGACCTCCTCCAGTG--------------------CCCACCTCATCTTA-CCCCATCCTCCTGGAACTGTGGTTTGGACTTTTGTCCCTAGCCACCCACCTGGGATTCACTGCTGCCCACATCCCTAGCACTGGTGTATCCCTGGATA---------------TATGTTCCTTTTA------TACTCTATGGCATTAATAAAACAGTGCT----AATATTCAATTCCCTGTTCTGACTATAACTAAAAATCTTCTCACAACTGAGCAACATCATACACCCCCACATCCCATTGAGAACCTTCAAAATGTATTGTATTGTAGTCCTACAATT-TCTGTAA-----TTCCTCGAACATGCAATAACAA-AAACACAATTCCttacagaggaagagaaggagcacCCTCATGCCCCAG-------------TCCCCAAGAAACTGATAAGAGTTAATACCACATAAATCCCAAG--CTCAATGCTCCTGGAAGCAGCCAATAACCAAGCACTCATAATGGGCTTTCCAGCTCACCCCACC-CACCCCCTGTCCCAGTTTTCTAATTCTGCTCAGCAACCACAACCATTAAATTCAGAAA-CTAATTTGTAAGGAAAACAAATGAGAAGAGTAATAGTCTCTCTATAGGCTTCCAATGAAAGGTTCCACCAGAACTAGTGTGCTGTAAAGAACAGAGAAAGGCACCTGGAGAGAAATGCCTATTAACATTCAACACCCCAGTGGAATGGAAGCTGACCCATTGCAAAATGGAAATCTGGCCCAGCACCCAGGGGCCAGCAGTCATGTTCACATTATTTATCCTGCAAAT--AGTCACTAATAGCAAGCAATCTCAGACCTTGCTCCCTGAAACTCAGGGAAAACCTGTAGAGCAT---------CCCCTGGGTA--GGTTTGGGTTACTCTGGAGC-ATGCTATTTGGAAACAGGAA--------AATCAAGATGAGAagtgggagagggagaaagagtcAGAGAGACTGGAGAAGCAGTGAGGTTGCAGAGG--------GATAGTCCTTGCACAGTCCCTGCAGAAATAGCCAACCTTGCTG-----------------GGAAGGAAACACTGATTCGATCTTCTGTTCCTCatggatgggggctggggactcaGAGATGGGTACAGATTCACCTTGAGTCATCCAGTGAGTCATAGACAGGAGGCAGAAATAGATCTTATGACCCATCGTTCTTTGCCACAGATGTCTTCTTGTATCTGGAACCAGGACTCCTGAGTGGGGATGGATTCCAGTGTTCCTTTGGAGCCACATTGGTTCATTTGATGA---TATTTCT------GTGCTCTTCCATTCCAAGGGCATATAAGTGAAAAGTCTAGGGCCAGGATCTTCAAACAAACTTTCCTACCTAAGGCTACCTCTCCAGTGAGATAAAGTACACAACTGTTTCCTGTCCTTGGCAAACA--------------TTTGCTTTCCATTTCTCG--------------------------TTTGCCTCTCCT-----------GACTTCTGGA-----------------AGGTGTGCCTTTCATAATCCATTC----------ATGTTTTGGGACTACTCATGTGA-------AGATA---------------GTAGTATTTTCAagaatcaattttattattattcaggT----TTGTCTCTCCAACAGGTGCCTTTCTATCAGGTCACTCAGTTCCAAGAGAATGGGACATGTCACACCATGCTGTGCCTCACTAGTGGA-----GTGTGTTAGTGGAGAGAGAGGAAGCAAGGAGAAAGAAGCATGGCCTCTCTGCAGGACAGAACAGGACAAGCAAGGTAAGCAAATTTAGGATTGGCTACTTTAAATCATTTTGGTGAACTCAGAAGTGTAGAACTTGGCTCTAGTGACTGATACACAGTTCTAGGTGAT--TAGGGTGATTAGGGCAGGTGAATAGTAGCTCAAAATGTGAGAGCCAA-----TGAGAGAGGCAGCTGGGGTGTAAGTTCTGAGTGGGTTGGTTGTTTGCTCCAGGAGAGAAATGCTCCTG-GCAAGTATCTTAAGT---------ATTGACTAGACCTGAGAGGAAACGTTTCTCAAGGGTTGTCAAGGCTTCCAGAaatcagaaat------acagaaaatcaaaaggcAGGATTAATGCAAGGATCTTTGGAGCTGCTGCAGCTGTCTTGTCACCATAGGGAACAACCAATTTCTGAGATGCCACCTCAGGCTCCTCAGCTTGTTAAATCACTGAGCGAAACAGCTCTgactcttttgatttcattatatgAGGTAGCAAAT-CCCTCCTGCTTTAGCCATCTTTATTTAgttactattttatttgcagTTGAAAACATACTAAG

a score=28204
s chr3           103689441 1169 + 160039680 TTTTCTATAGAGAACATTCCCACTCAGCAAACAGGGTCATCCTTTGTGTGTGTGAAGCCATGCCCTGCCTCAAACATGGGACCTGCCTGGCTAACTGAGCTCAGATATGTAAATACATCCTGGTTTTTTAATTACTTCCAACACAGAGAACACATTTGGAGCCCCTTGCCAGCCATTCGACATTTCTTACCATTCCAAACTGCAGGGGAAAATGAGCTTTTCTGCCACAGGAGACAAAGAAGAAAAAAAAAAACCAAGACC---ATTTTTAAAAATTAAGTCTATATTTGGTGTTATTCACAGACACATTACATCT-TTTGTAATAAATGGAAGTTAGTTTGAATCTC-TTGAAATTGATTTCTCCATTCTCCCCAGCACCCTACTTTGCAGGACCACTGATTTTTAAACTTGTGTATTACATTTATTTGTTTGTTTATTGGCAaggacacacgtgtgaaggtcctctcccttcaccccctgggttccaggaatccacctcacatcattaagcttgcctttatcttctgagccatttgccagccctgGTCCACTGCCTCTGAAACTCCTGTCCCTAACTCAAAAGCCACTGGGCAGGCAGTCCAGGCCCAGCCACCAAGGTCCATGAAAGTGGGTTTCTAGAGACCCTTCAAAAGTCCACAGGAAGCAGTGTGCTTGGA--GAAGCCAAGCCTTAGGTGATGGGTCCTGGACATGGGCACTGCTATT--------------CTGAAACTATAAAGCCTCTTGGGGGTTATAT---CCCTACCCCACTCCATTCATCCATTCCCTTTTGGGCCTAATTCCTCCAAG--GAAGTGGAGGGAAATAATTTATAGAAGATTAACTCAACTTAGCATTCACCTCTTAAAAGCAA-CAACAGTCTTAGTTTGGGGCAGAAGCACCTCTCGGCAAAACCCTCCAAATTCCTCTTTGTTTTGTAAAAATCAGTGGGGAACACTCTGCT--TTGCTGTGCAttttggtctgtgttctctgtgttcttcagcaaataacagaactcacttggcttacacaagacaggaaaatgaactgtatgaaaacaagaggaacccatcgatccaaggatgagggaggagatg-aggtctcggggaagttccagatccaGAGTCCACCAAAAGCCCAG----TCAAT---CCATCTCTTCTCTGCCTACCACTCTAGGACCACA
s HiC_scaffold_1 114062971  990 - 233722169 TTTTCCACAGAGGACTTCTCTGTTTAGCCAG-ATCATCATCCTCTTTGTGCGTAAAGCCATGACCTACCTCAAACTTGGGTTCTGAATGGCCAACTAAGCTCAGATATGTAAATACTTCCTGGATTTTTAATTACTTCCAGCACAGAGAACACATCTGGAGCCCCTTGCGAGTCATTCTACATCTTTTACCACTCCAAACTGCTTAGGAAAATGAGTTTTTCTGCCACtagagacaaag--------agaaaactaagaacttttttttttaaaatcgggtCTGTATTTGGCGTTATTCTCAGAAGCATTGCTTCTATTTGTAATAAATGGTAGTTGGTTTGTATTTCATGGAAATTGATTTCTCCACTCTCCACAGTACCCCATTTT-------------------------TTCATTAC-------------------------------------------------------------------------------------------------------------------------------TCTATTGACTCTAAAGCTC----------CTCAAAATCCACGTGGCATATCACCCAGGTCTAGCAAC----------------AGGTTCCTGGAG-CCCTTGAACAGTTCAGAAGGCATAGACCACTGAGAATAAAGTGAAACTTTA-ATAATGAGTCCTGGACGTAATAACTGCTATGAGAATATAATATCACAGAGGATATAAACTCTCCATATAGCTATTTGTATCTGGTCCCACCTTATTCGCCCATTCATATT-----CTAATTACTCCAAACCAAGAAGGAGAAAACTGATTTAAAGAAAGTTAAGTTAGCTTGGCATTAGGGCCTAAGAAGGAAGCAACAGAATCTCATTTGGACAGTATTACTTCCCAGCAAAACCACCCAAATTCTTC---ATTTCATAAAGGTGTTGGGAAAGCAATCTGATTATCATTGTG-ATTTTGGTTAAGGCTCTCT-TGTTT----GCAAATAACAAAAAACCat----ataaacaaaacaggaaaattaaTTATAC--------GAGCATCTCACAGATCCTAATATCAAGGAGAGACTGTAGATACTAGGAAAGATTTAAA-CCAGAAGCTAGAAAATCCACAGGAATTCAATCAgccatttcttatttatttttctctctaggaTCCCA

a score=19448
s chr3           103695338 748 + 160039680 CCTACCACAGAGGGTCTGTGTATGGCTGAACAGGATCAGACACA---AATACCATATAGCACAACGTAATAACCAGCACAAGAACATTAGA-----CAAAGTTCT----GTTTTCCTTGA----GGTTCTGTCTCTCTCCTCCCCCTCCAAGtccctccttccttcttctcctccctttcttcctttccacttccctgtctcttttcctttctctttttcttcttcctctcttcctctcttcctctcttccccccc--ctctctctcccctcctttctttctcccttTTTATACTTTATCATCTCCATACCGTTCCCAGCCACTGCTTGGTTTGAGGAAGGATGAACTAATGAGCTCAAGAGAGCCTGCATTTCAGTCA----TCAATGAATCACTGGGCGATGACTGCATCCCCCTGGAAAT---AGGAGGCCTGGAAGCTTCTTGCTTACACAGAGCTGGCTGCACACCCAGCAGGGGCTCAGGGCACAGTTGCTAAATGATAGATGACACTGTTGCTCCAGGTAGTGTGCTCACTGGGTGGATATGAGCTATTTTTCTTTATAGAATCATTCTCCTGCTGTGACTGGAACACCAGACTGGGATTCTCCTACAGAGAAATAGGACACCTGCCCTCGATGGggtttgacacagaaggcat-----ctgcagtcagaacgcctagatctgattcataatgctggtgctggttttactctgcaaccttgagaaagcgacttgccctctctgagcctcaa------ttttctcatctgtaagagga
s HiC_scaffold_1 114066386 717 - 233722169 cttaaaacacAAAGTCTTTACGTGGCTTAATAGGGacatataaatgaaataacatataCTGTAAAATGCCAGCAAATATAAATTTACTACagactttaaaaatttacaagtttCCCTTGAAAAAGGTGAATTTTATTTCcactccctc--------tccttcctccttctcctcctt------------------------cttctcctttttctggcttatgtttctttcctcctttttccccttcCACTTCTTTGACCTTTTCTCCTGTTCACTTCTGCTTTCTTTCCATCCTACAACAACTCTCAGCCTCAGCCTATCCTTGCCCAATTTGAG------------------CCCCAGACAGTGTGTATTTTAATTAATCTTCTATGAATCACTGGGAAATGGCTTTGTTATTCTGAAAACGAAAGGAGTCCTAGAAGTTTCTCACTAACGCAGAGCTGGCTGCACACCCAGCAGAGGCTCTGGG-ATAGTTGTTAAAT----CAGGGTACCATTGCTCCACATA--GGGATCACAGGATAAACAGgggaaatttctttttatagattCATCTTCAAGCTGCATCTGGGGCACCAACCTGGGATTCTCCTACAGAGAAACAGGACA-CTGCCCTTGGTCAGGTGTGGCACATAAGGCATGGCAACTGTGATCAGAAGATCTAGACCTGAGTCACAA---TTGTGACATTTTTGCTCT--AATCTTAGGAAAGTTATTTA----CTCCaaacttcaaatttattttttttattttaaagaaga

a score=62398
s chr3           103714953 4828 + 160039680 [encoded data, 5383 characters]
s HiC_scaffold_1 114086320 4575 - 233722169 [encoded data, 5383 characters]

a score=10143
s chr3           103726135 723 + 160039680 CCCTCTTCATGAGCTGTAAGCCTTGAAAGGCAAAGAACCATCCTGAGTCTTCCTCGGCCCCCAGCACAAAGCCTGGCTCTTGTCAAATGCTTGCAGGTGGCATCAGCTGCGTTA------GAGGACAAGGTCTGCCCCACTGCAGTCTGTCCGGTGGCTCAGAGGAGC-----AAGCAGTGCTACTGTTCATTGTTTCTCTGAGTGGCTGGGGCCAGAGGTGAGTGTCCAGCAGAAGCTGTGGCTCAAGGCAAAGATGAGTTCACAGGTGAGTTCAGAATGTCAGGGATGTAAACACGGAGAAAAAGACCGGAAACAAAAAAAAACAAACAAAATAAGAAACACCAAGCAACAGCAACTGGGTTCTACT-CCTGCT-GGTTTCTGGCTCCCTGGCTGCTGCCCGCTGGCAGGGTTCTACATTCTGGGGAGAATCAACTGTTTCTGGAAGAATATAAACCTG-GAGAAAACATGGTGCCAGGCACTCACCTCTCACACTCATGGAGCATCCTCGGAAGGAAAAGG-------CAGCTCCAAGAGGCCGAAGACCCCTCCCCCTTCCTCTGTGCCTCCCAGGCTTT--TTCTGTCCTATTTCATATAGAGTCACTAGTGAGCCAGACCACGGGGCACTGAATCTGGAAATAAT----------------------------GAAAGGGACAAAGCCAC-GTCTAGCCTGGAGAGTTGCATCTACAGACATCAATATTGATGCATGAGGAGGCAAGAAGAGATGT------GTCAGGAGAGGCT
s HiC_scaffold_1 114096477 716 - 233722169 ccaccctagTAAGTGGTAAGCTCCTGAGGGCACAGACGCTGTCTACATCC-CCTCCACCTCCAGC-CAGAGCCCG---------CAGTG-TTATTAGTAGGACTTGTTGCTTTAAGGATTGAGAACA----CTGTACAA--GCACCATGTTTAGCAGGTAAAAAGGGCCCTAAAAACAGAGCTGCTGCTTATTATTTCTATG---------GACCAGGGGCAAGTGCCCTGCAAAAGCTGCTTCCCACAGTAAGGGCAAATTCA-----GTGTGCCCATTCTCAAGGAGACACAAAGTTGGCAAAGGCGCTGTCCCCAGAAATCTTACAC-------TAAAAACTGTGCAGTAGCCACTGGGCCCTGGTGTCTGCTCAGGTTCTGGTGCCCTGGTTGGTGATCCTTGGCATCTTTCCACATGCAGGGGAGGAGCAGCTATGCCAGGGAGAACAGAAAACTGTGAAAAGACATGGCATTGGATAGGTGGCC----------TGGAT--TCCTCGCTGGGAACAGTGGCGGACCATCCCTAAATAGTCAAAGatccctctttcttcctttgtgcCTTTGGGCCTTTGCTTCT-CCCTATTTTGC------TCACTA---AGCCAGACTAGCAGGCACCAAAGCTGAAGAGAGGAAGTTACTATCTCAGCCCTCAAGGGCTAGAAAGGGACAGTTCTATAATCCAGTCAGGAGAGATG-GCCCATAAACA--AATAAGGACACAC-AGGAGGCAAGAAAACGTGTGCTAAAGTCAGGAAAGACT

a score=55209
s chr3           103727060 3203 + 160039680 gtcctc-cAGAGAGGAAAACTCGGCTTGATCTTCTCCAGACTGTAAATTGGTAAGAGTGTTTTTCTGCCTCGCTTGCCCTCATTAAAAACCCTGAGAACATAAATCACAACTTATGACCAATAATTTGCCTGTAATTTACAGGCTTTCAAGTGAGTAGTGAAGTTGGGTTTAAATGAGATTATTCCTATCTCAATTTAAAATCCACTGACACAATTAGTATTTCCCCCATGTCTCTACTTAC-TACTTAATTATC-CCAAGTGTTTCCAGTTTACATCTCTTAAGCTTGCCGTAGATGTCTAACAAACATGCGACAGTGAAAACATTTTACTTCAATTAAGACTAAAGAGGGCTAGAAAGGACAGAGCGGGAAGGAGAAGCAGAATTGCTATGTCATAATTAGAAAGTAGTAGGG-GATTCACGTGTGTGTGCATTTACTTTCCCTGTGCTGGGAGGGAATGCTGCTCACAAATCCAGGTCAGTGGGTAGCAAT-TCCAGGGGCTGGAAACTAGTGCAGCCTCAGCCACTACTATCATAATACACACAGCTTGACTCATAAGAGTAAATGAATACTGCACATAGAAGGGACCAGGCA-GAGTGTGTGAATTAGGATACATGTCCATGACCTGAAGGAACAGAGTAATCCAGGTGACTCTGAGGCTTCTTCCAGCTTAAAACAGGTGCTGCTT-TTGTCTCTGGAAAAGTCTGCCATCCTTCTTGTGGT-CAATAA-AGGTACCTGGCATGCATGCCAACTTTAAATCTTTCAAATCCTTCTCACTCCAGTTTTGCCCCAGAGTAGAGTGGACAGCTGGTGTATAACAGTgagagagaggagagagggagagagggagagagggagagagggagagagggagagagagagagagagagagagagagagagtctaaatctggCTC--------CTGATTACAGGGAGGGCTGACAGGTGACAGGGGGAGAGGCAAG----GAAACACTAAGAAG-----AGCAGAAGCACATGCAGCTACGTTGTGCATGGTGTAATTAGTTCTGATGGGGTTTCAGCATGGTGGCATGGTAACTATAATGGACCTTGGCAATAGCTGAGTCATGGAGGGAAGTGAAACTGTGGCTATGTCACTGGGATCTGGCCA-TCAACTCATTTACAAAACATCATTCACACA-TGGAATGCACCCGATTCTGTCTGA-----------GGaaagatggat--------------------------------------------------------------------------------------------gaagcttggcccctgccctcaaagggctctgtggaactcagtttcaacaacaaaagatagagggagtcaaagtagatgatccctaaagccctt--ctaAGACTTCAGGATGTTTCATGCGTTGGGACTTGAAGCATAAAAtacttttatatcactgtgaccaaaatacttgacagaaacacctt----aagggaggaag--gacttatgtgggctca-------gctcatgtccatacggctacagAATAGTAAGCAGAGAGTGGTCCAATCTAGGGGGCAGGCTAGTAACCTTCCATGGCCCAGCTCTGGTGATGGGCTTCCAGCACGTAGGCCCCACCCCCTAATTCCCACCATATGCTCATTCTCCAATTCCCTCTCTCCAAAGGCAGTCAGGAGAGATGGAGAAAAGAT----CATTTGATAACTGC----------AGGCCTGAAACACAAAAATTCAACAGCCG-CAAACAAAACCCATGTGCAACTGGTCCATAGTAAGCATCTGTAAGATGAAATGCAGTTATAACAGCATTAAAAGATCTGTCAAAACCAACAGCAGGATTAAGTAAAAAAAATCAATAGTGATGACCACAGGGAC-ACACGCTGAACAACCGAAATATCTTAGAAAATGATGTGGATGAAAAAAGCCAG-GTTTGGAAAACTATGAAATTACACCATGCTCACTTGTGTACATGAtctctctctctctctctctctctctctctctctctctctctcctctctAGTAGATTTGCTGCAGTCACAGAGAAGGCACACTATGACCCACCTTGCTCTCTTCCCTGACAGCTGGTGCAGAA-GCCA-TCACTTCTACTCTTGCAGAGATCTACGATGGAAACTGGCTACCTTCCCCACCTTTGAACAGAACAATGTGTAATGGAGACGGAAGGACAGAAGGCAGTTTGGAAGCCACTGGTTCAAAGCAGATGGTTtctctctctctctctctctctctctctTTTTTTttttttttttttgagacagggtttctctgtatagccctagctgtcctggaactcactttgtagaccaggctagcctcgaactcagaaatctgcctgactctgcctcccaagtgctgggattaaaggcatgcaccactacgccTCACAGCAGATGCTTTCTAATGCTTCACAGAAATGGCTACCAACACATGGCTCAACAGCAAGACAGCAAGTGGCACGGGCCTGGGGacgaacatttattaagcaccca-----ctggatgctctgctgga-------tatctaattagcaccagctcatctactcctcatacctgacctatgaaataggaactacccagggatgcacacagaagtgacttgtacaggagcacacagccagctcatggcggagcaagcgcaggagttcaacccaagctcgtgtctc-agctgtttacactccagcacaccgccTTCAAGACAGATTCCAGCTCCCATGGTTATCATCCATATCACCTTAC-----ATGACTTTAATTCCTCTGCTCCCTAGCTTCTGAGGACCTGCCTGTCTCCTGAGATTGCAGTGAGGATGAAAGGAGAACACCATGAA--CACTTGCTGTTTTTAAAGGCCCTGTGC----------ATGACAAACTATAATGTGTGTACAGGATCCTTT--------GACCTCCTGCTCCAc----attccttcacttaattctcatcacagtctgtcaggttgg-aatggcgtctcc-ccgtgtcgaggaagaagtgagagactcag-----gtgaa----ctaacttgctccaaagtcacactccagcgagtggaaggacagtcatgtgaagtcaggcttaagtactccagagccccatca----------------------cttcccactgtcttctgctgAGTCATTGTTTTC-----TGGAGCCATGGGACATAGACAGGCT----------AGCGTCACCTCAGGT-------------GTCACCACCATGGGCAGACAGGCATGCCCTGCAGTGGAGCTGGGATCGCTT----TGTGTACCCATTGATCGTCT-------TTG------TCCATCGAGAACATTTACTGCTTGTCCACAGTGGGCCACTCCCGAGTCAGGTTCTCAATTCCAGGGACAGT-GTGCTCTTCTG--GGCTCTGCTCAGAGG
s HiC_scaffold_1 114098270 3027 - 233722169 GCCCTCACAGACAATGCAAACCAGCTTACTCCTTTCCAGGTtgtaaatttgt------gtttttctgcctCACTTGCCCTCATTAAAAACCCACCAACCATAAATCACAATTTATGGCCAATAATTTGTCTGCAATTTACAAGCTTTTAAATGAATGCTGAAGTTTGGTTAAAATTAGATTGTTTCTATCTCAATTTTAAATCcaataatataattaaaatttcccCTATATCTTCCCTTACTTACTTAATTATCTTTAAGTGTTtccagtttacatttttaaagctt-CCCTAGCCAGCTAAGCAACATaggacaataaaaatatttcccctcAAGTAGGAGTAAAGAGGGCTGGAAAAG--AGAGAGGGGAGCAGAAGGGAATTTGCTAGGTTATAGTCAGAAATCAGGAGGGAAATTCAGATCTATTTAGATTGACCTCTCCTATGCTGGAAGGGAAGAACCCTTACAAATCCAAATCCCTCGATAGAGATATACATGCTTCAAAAAGTCATGTGTAGACAGACGC--------CTGCACACACAATGTG----------------------------TAGAAGTAACTAGACAGGGGTTTGTGAGTTAGTGTACACATGCATGACCAGAGGAACTAGA-----CCAGATGACTTTCAGACATCTTCTAACTGAAAATAGACAGTATTTCTTGTCTACAGAATACTCTGCCATAGGCTTTGTAATACAAAAATAGGTACATGATAAGCAGGCCAATTTTAAGTCTTTCAACACTCTTTCAGTCTTGTTCTGCCCCAGACCAGAGTGGACAGCTAATTAGAAGCAGTGATAGAGATTCTACAAAG----------------------------------------------------------------TGAATCTGGCTTCAAGGAGACTGACTATAGAGAAAACTGACAGGTAATAGTGAGAGGAAAGAGAATAGAAAcactaaggagaaaaaaacaaaagcataaatagCCACATTTTACATGGTATAATTGATTCTGATGGAATCATGACATCATAGGTTAGT-ATAGTAATTGAGGTTGATAATAACTGAGTCATCATGAGAAATTAAGTTAAAGATGTGTCACTAGGAGCTGATCACTCAGTTCATTTACAAAATGTTTATTGGACACCATTACGCACCTGACTCTGTCTAGACCCTGGGGATAAAAAGATGGattagggctgggaatatagctcaatggcataagcacctgcctggcaagcacatgatcatgagttcaatccccagtacaaaaaaaagaaaaagaaaaagcatggtCTTTGCCTTCAAAAAGCTCTCTGGACTTGAGTTTTGCTAATGAAAAGATGAGAGAGTCAAAGGGGCTGATTCCTAAGGGTATTTCCTAGAAGTTTTGAATGTTTTATGTATTAGAGCTTGAAG--TTCAATGATcctaaaagat----aacaatataGGTGATGTAATCCTATTTTGCAAGTGAGCAAACTGAAGTGTAGGGGGTTGGTgtcttgctcaaggtcacacagttaaTGAGCAGCAGAACTAGAA-----CACTCAGGCATATAGACCAGTCAC----------------ATAGAAATGGA--------ACGT--TCCTCTTACTCTTGCGCCCATGCTCCTCCCACTCTGCACCTCTC-CTCCTAAAAGGCAGTAAGAGTAAATGGAGAACAGCTCATGCATCTGACAACTGCATAGATTTAAAGGTCtggaacac-aaaattcagtaGCTACCAAACAAAACTCATGTGCAACTGTATGATAATAAATATCTGTAAGACAAAGTACAACCTAAATGGCATTGAAGGATCTGttgaaatcaaaaacaaaattaagcttaaaaaaaaagtagtggtaGC--TAGGGACAATATGCTGAACAA-TGAAATGTCTCTGAGAA-ACTGTCGAAAGGAAAAGCCATCGTAGGCCCAACTGCAAAA-----------ACACCTGCACTGACAAT-----------------------------------------CCCGATGGCAGAGTCAGTCCAAGCACAGAT-GGGAACACTACAGTGCCCCCTGCTCTCTTCCCCAGTGGCCAGCATAGGATGTCAGTCAGTCCTGCTCATACTGACAT----GGTGGGAAACAGATGCCATATCTTCCT----GCAGAACTGTGTACA----------AATGAAGGAAGGCAG-CTGGAGGCTCCTGGTTCAAAGCTGCTGATTT-----------------------------------------------ACAG-------------------------------------------------------------------------------------TAACAAGT--------------------------------AGAGAGGAT----------------------------------CACAGTTCAATATtatgaaagcaa-------------aagaatgaacatttattgagcacctgttTTTCTGACTTCTCTGAGAGATAGATATTATTTAATAAGCATTAGCTCATCCATTCCTTACTGTAAGTCTCTGAGGCAGGTAATAATTATGGAAGGTCAGAGAAGTGATTTGGATAAGAGCCCATGGCTAACCCAGGGCAGAGTGAAGATCTGAACTCTGTCGATGTTCAGATCTCTAGCTTTTCCCA-----------CATTCCCAGGACAGGGTCTGACATCTGTACTTCTTAGTTTTAT-AGCTTACACAAAATCATTTTAACCTCTAAATTCTCAGGTTCCTGAGATTTTAACTATCTCATAGGATTTTTGTGACAAAGGAGATAAAGTG-CATGAAAGTACTTTGTAATTTAATATGATTCATGCAgtaatattaatga-aaatagtaatatttatagAACATTTACTAAGTGCCAGGCTTACTGCTTTATATAGATTACTTCATGCAATTCTCATAACAATCTGGGAAATTGGTAatactatttccattttatagatgaagaaact-gaggctcagagctaATGAAGTGTCTTACTTGTTCCCAGG-CACACTCTAGCCAATGTCAGGGCTGACAGGAGAA-CCTGGTCAAACAACTCCAGAACTCTATGAGCCAGATGCTATACACATAGTTCTTTCCATTCCTCTCTATAGCTTCACTGTTTCCTCCCTTGTAGCCACAGGGAATGGTGGGAATCTTCCCAGGGAGCTTCCCCTTAGACTTGGGAGCTTGAAGTCATCACTGTGAA-AGGCTAGTGCACTCTGCAGt-----tgaaattgttttcaatttgcaCCTGTAGTTTGTTCAACTGAATTGAAAAGTGCCACCAAGGTCATATACTGCTTGCTGGCAATAGGCCACTCCTGAACTTGGTCCTGAGTTAGAAAGAAAATCATGCTCCTTTGAAGACTCTTACCAAGGG

a score=216180
s chr3           103731104 7818 + 160039680 [encoded data, 8555 characters]
s HiC_scaffold_1 114113790 7553 - 233722169 [encoded data, 8555 characters]

a score=307671
s chr3           103739721 7579 + 160039680 [encoded data, 8825 characters]
s HiC_scaffold_1 114122731 8369 - 233722169 [encoded data, 8825 characters]

a score=175045
s chr3           103748849 5102 + 160039680 [encoded data, 5426 characters]
s HiC_scaffold_1 114131150 4816 - 233722169 [encoded data, 5426 characters]

a score=22093
s chr3           103753983 673 + 160039680 CATTTCTCAATGTACAGAGCGCCATCTCTACAAGTCTAAAGA-GACAATGGGAGAGTTGTAAAGGACAGGAATAA--ATATTCTGCTTTCTTAGAGATATTTCATTTTAAGACGTCTGAATCATGAGCAAGAAAGATCTTATAGTCAAAGCAAATACCACTTTTTTTTTTTTTTTCAGGACAAAATATTTGTTTCTCAATAGTGCT------------------------GCTCCGGCTTTTACCTGTGTGAGTACTCCTGACTGGATCTGCAGCGGCTGAGCAGCAGGCGCCTGGGGTACAATTGGCACAGCATTATCCATCCTCACAGGGAATCCAGAATGCTTTGTTGTTGCTTGTAGTCCAGCTGGTGAAGAAAACATGACAGTGAAACGTCTCTGCTGGGTCTGAACAGATGCTG------------GGTCATTACTGTGTGTTTTCTTCACTGC----TCAGG-TTTAATTCTAGACAGTTAAGACAAAGCCTTTCCACTCACAAAAGATACCACAGTTAAGAAAA-GGAGGCT--ATTCCCTTCAAGTTAAATTAGTGGAAGGCATTTAATGCAGGGAAGGCTGGCTTAAGGGAATATAAACTCTT-------------ACTGTTAA---AATACTTAT--TTCATCCCCATTATCAGTACAAGCAA---------------------AAGCCAGACAACCTCCACTCTTAAGTCACATTTACCTTGCAGTTCAC----TAGGGGAATGGGTGAGG
s HiC_scaffold_1 114136442 726 - 233722169 CATTTCTCAGTGTCTAAACATTTATC-CTTTAAGTTTGAGGAAGACACTGGCAGAGTTGT----TATAATACTAAGAATATCCAA-----ttatagatatttcattttaagaTCACTGAATCATGACCAAGAAAGATCTTATATTCAAAGCAAACAGCATTTTCT-----------AGAAGAAAGTATCT--TTCTCAACAGTGCTTCAGCACCACCGTGCATCCGCATGGCCCCAGGTTTTACCTGTGTGAGGACTCCTGACTGTATCTGCAGTGGCTGAGCAGCCGGTGCCTGGGGTACAATCGGTACAGCATTATCCATCCTCACAGGGAATCCAGAGTGCTTTGTTGTTGCTTGCAGACCAGCTGATGAAAACAGCATCATGGTTAAATGGTTTTCCTGAGTCTGA--GAGTACTGTTTGTTTGGGGAGGCTCCTATGGTTTATTTTTAGCTTTGCCATATCAAGTTTTAGTCCTAAACACTTAAGCCAAAGGAGTTTCATTCACAGAAGACTTGAGACAAAAGAAAAGGGAGACTTGGTTCCATTTAGTATAGATTAATGCAAAAGACATATGACAGAGAA--TTGACTGAAgggaattctaatttttttaatgtgataaaatttttaaaacaatactcaTCATACATCTCAATTAACAGTACAAAAAACTTCACTTAagaagttacattaaaataaacaa----------gaagTTACATTCATCTTTTAACTGACAGTATGGGAGAGTGATTGAAG

a score=33311
s chr3           103755716 1173 + 160039680 TTGTCCTGGAATCCTGACCTAAGAGAACAGGAG-----TTATTTTTGTT----TTATTTTTCTGAATTTAGTACTTTAAA-TATAGAGAACTACAGAAATGTGAAAAGAAGGTAAACACTGCCTGATA----------------CTCTTAAGTGAAGCCATTTTGTAAAAGAATATAGAA--GAGCGAATACTCTGAAGTCACGGACTGTTGGACA-AAATCAGC---TCATGGC-TGAGG-------------------------------TTGGTGGGTA-----------------------------ACCAG-------------------------------------------CAACTTTATACAACTAATC-----------CTAAAAGGCAGTATGGAGTA---TTTCAATACATACGTGACGAT-AACCCCATTGCCTAGGTTCTAA---TGGTTCAACCATAAATTACTATATTACTTTTGGCCTTTTGGCATAAGCAGgttttgtcatttataaaatggg---ttgacatgacccacctcctagagccatacataaggataaactgatacc------tgtaaaggactgtctggcacataTGATAATGGACTTCAGGTATCATCATTACCACTTTA---TTATAAACCCCTTCTCATCCAAACACTTTAAATCTGTTCTATAGGCGCT-CAGGTTATCTAGACTTCTTAAACTGGAAGATCCACGCCCCCCCCCTCAACTCCCAAGCTTACATTTATCAAATTATACCAAAGTGAGTTCTCCCACATTTCCCGTACTGTCTC---AGTTTACATTTTGTTCTGT--AAAGAACTCAAAAGTTCTTTTATTATTTTATCTCA---GTATCATCTGAGAATCGGCAGAGAATCTCGGACTCTTACATTTGAAAATTGTTCCCACAGAACTTACTTTAGAAAGGGTGAGAAGAGGGATAGCTAATTTGCTACAGTCTATAGATGATCAGTTTGTGACAACCCAAAATATAGAATCTACTCCTATGAGGTATATATAGAAAA-TAATTTGGTAAATTAGGCTAAATTTGCATTTACGGATTGTGAATCTGCTCCTGCGCTCCCCCTGTGGTCTCTCCCTGGCTTACACCGCTACCGCTCTCCTGGCCTCCCGGGGAGCTCTCAGTTTCCCCCAGACCCTCATTTCCTTCCGCTTGCTCCGACTCTGTCAGAAACCAAACAAACAAAAG--TCACAATCAATAAGTAACTTAAGTAAAAAGATAAAAAGGCTACCTGCTTCTATATAAAATGCTCTGAGAAGCCTGGATCCTGGTTTATTCCCACATTGACACCAAGCTTCTCTT
s HiC_scaffold_1 114137403 1259 - 233722169 TTTTTCTCAAATCGTGATCTAAAAGAGGAGTAGAgctttggtttttgttatttttattctactgAATATAGGTCATTAAACTATAAAGAATCTCAGAAGTATGGAGAGAAGAGTAAAACTGCCTAATGATGAGAGTTTGGCCCTCTACTAAGTATAGATATGTTGTGAAGGAATGGAAGATGAAGTGGGCAACATGGAACATAAAACTGCTGGATAGAAATCAGCATATCAGGATATGTGGCAAGTcaaccaattctttttttttttttttttttgtgggtgccaggaattgaacccaggacctcacacttaccagggaggcactgtgctgctgagctaaatccctggccccagtcaACCAATTCTTCACAGATATTCGAGATTAAACACTCAAAGGCAGTATGGAATAATACTTCAAAACA--AGTACTGATGAATCCTACTGAATGGGTTCAAAACATTGTTCTGTCGTAAATGATTACAGGGTTT-----------GGACAAATGTGCatgtccatttttaaattggggtATTGACATTATCTACCCCCTGAGGTTGTTTGTGAgagtaaatacataaaaagcaacttaaaacattttctagCA--TACGGAAATA-ATATCAGGTACCATCATTACTACCTTAATTTCAAAATTcccttttatttgaaatttttagaatttGCTCTACTAGCTCTTCAGGTTATTTACATTTCTAAATAGGAAAAAACTG----------------TCTAAAACTTAAATTTACCTAATTATACCAAAAGGGATT-----ACCTTTTCCTCTCTACCTCTTcagttaacattttgttttgttaaaggGATTCAAAAGTTATTCTGCT---TCATCTCATAAATATCGTCTGAGAAGCAGCAGAAAACTTTAGCATCCCACATCTGAAAACCATTTCAAT--------------------------GAAGAAT-------------CAGTCCATG-----------TCCGACAACCCAGAGTACAGAATTTACTGTTACAAAGCATATGTAAAAAAGTAATCTGGTAAATTAGGCTAAATTTGCATTTACGGATTTTGAATCTGCTCCTCCGCTCTCCCCGTGGGCTCTCCCTGGTTTAGACTGCTATTGCTCTCCTGTCCTCCCGGTAATCTCTCAGTctcccccagcccctcatttcctTCTGTTTGCTCCAACTCTGTcggaaaccaaacaaacaaaagaatcatAGTCAATAAGTAactaaagtaaaaagataaaaatgctacCTGCTTCTATGT-AAGTGTTATAAGAAGCCTAAATCCAAGTTTATCCCCACAAGGA-ACTGACTTTCACTT

a score=23595
s chr3           103758198 615 + 160039680 TTTTAGTTTCTATATTCTTAACTATATCCTATAATAAAGTCACACTAAA-----GTCAACACATAACAATTCTGATTATAACAA--TTTAAAGATGTATATATTCTATAAACTGACATGTATATGCTTATAC--AAATATTTTCCTTCAATGGAAACAAACACATTATACAGCAACTCGGTCAAGAAAAT----------------CAATG-------------------------------------AAAAGGGAAAAAA--ATCTATATGGCAGCTCCCAATTTCAGTCAT--CTA-CATCAGAG----TTTAAACTTGTCAAAGATCAGAACTGAACAACTAGATCTTCTAGAGCAGGTAAGTCCAATGTCTAATTCCACAGAGGGAAGAGTTTCTGTACTTACTCTGAAAAGCAGGTGGGCATACTATAAATGTTTGCTGGAATGGATCTGTCTGAGTGCAGATCTGGGTGGTTCCAGGTTGTAAGGAAACACCCTGCTGGGCAACTCCAGGAACTGGCGCTGCCGACGATGGGTACAAAGCCGATTGGTAGTTTAGCAGCGAGACATCTGAATTAGCCAGAGAAAGGGTAGCTGCTGCTGCAGTAGAGCTGGAAGCTAGAACACTGGCCTGAAACAGCAAGATCACACAGAGACGGTATTAGAAGATGGACGTACACAATA
s HiC_scaffold_1 114139232 644 - 233722169 ttttatttgcattattttt--------ttcataatggaATGATATAAAAAGTTAGACAATATATAGCAATGCTGTTTATgacaaatttttcaaatatataccTTCTGCCTATTGCATAatacatgtttatatttaaatacaaGGTGTCTAGGGGCAAAAAACTAGTATTAAGCAATTCAGTTAAGGAAATATAAATTGAACTCCTACAATGTATCAGATAGTAAAATAACCAGAGAAATAaccaatttaaaaaggaaaaggctaTCTTT-TAATATCACTCAATTTCAGTTATGCCTATCATCAGAGACAGTTTAAAATTATCAAAGATCAGAACCAA---------------------------TACAATTTCGTATGACACAG------GAGTTTCTCCACTTACTTTGGAAAGCAGGTGGACACACTATAAATGTTTGTTGGAATGGATCTGTTTGAGTGCAAATCTGGGTAGTTCCAGGCTGCAAGGAAACACCCTGCTGGGCAACTCCAGGCACTGGTGCTGCAGATGATGGGTACAAAGCTGACTGGTAGTTTAACAGTGAGACATCTGAATTAGCCAGAGAAAGAGTAGCAGCTGCTGCAGTAGAACTGGATGCTAGAACACTGGCCtaggaaaaaagaattacattTGTATATTGGTGAAAAGTGAAGATAGACAATA

a score=24325
s chr3           103760320 639 + 160039680 gatcaaactgaggcccccaggcttgcacggcaaggacttttacctgatgagccatcttgcccaggcccTCACACAGAAAATGCTAAAGAAGCAACAGAAATAGCAGCATAG-GACTGGTCT----------------CTCTTACT-GCCTCTGCCCCACCTAGGCTCGAGTTCCCACAGTCCCTCACT--GTACCTGATTGTGCACTGTGTTGAGCTGGTTGCTGAAGCTCATGGTTAGATTTGTGCTTGTATTTGGAGCGACATGTGTAGTGAAGGGACTCTTGATCTGACTCACTGTGTCATACATGTGAACCCTCCGCTTGCAGATCTCCATGTTCTGGAAACAGGACTTAACGCTGAAAAAGATTAGAAATACACTAAATGAATGCTGGAGTTAAAACAAAAAATTCAAAACAGACATGGAACAAAGTATTTGTTTCCAAATATTTTCAGAAAGAAGAACCAAGGGTTGTTCTAACAAGAAGAAAAATCGACACCTCTCTCTAAGCCCACAGCTTTTAGA-AAGAAAAGCACCAGTGAGTCA-ATTTACCAGCAACAAAATGACTGCTGACCTGGCAGCGCCCTGGAAATAAGATGGCAACTCCACCGAGGCACAGCGGCACAGCCCGACCCCCATACTCACTGGCTGCTGTGTGGA
s HiC_scaffold_1 114140531 640 - 233722169 gatcgaactcacgaccgcctgcttgcaaggcaggtgcttatgcc-gctgagctaaat--ccccagccccaacatagAAAATTCT---TAAGCCATAAGACCATCAAAACAAAGACTAGTTTTTTACTTGGCCCTGTACTCTCACTAGTTTCTATCTTACTTAGGCTCAAGTTTCCAAAGTCATTAACTTAATACCTGATTGTGCACTGTATTGAGCTGGTTGCTGAAGCTCATGGTTAGATTTGTGCTTGTATTTGGCGCAACATGTGTAGTGAAGGGACTCTTGATCTGACTCACTGTATCATACATGTGAACCCTCCGCTTGCAGATCTCCATGTTCTGAAAGCAAGACTTAACACTGAAAGAGAGTAAAGATTCACTAAATGAATGCTGAAACTTAAACAGAAAACAACTTAAAGACAAAGATCAAGA-----GGTTTTAAGCACTTAAAGAAA-AAGATTCAA-----GTCTTTATCATAAAAAATACACATCCTCATTTTTAATCTCATGATTTTTCAATGAGAAAAGCATCAGCGAGCCACATACATAAGCACCAAAACTGGTACTAACTTGATAGATCTGCAGCACAAGAATCAAGAACCAATCAGGGAAAAGC--CCTAGACCA--TATCATACTTACTGATTGCTATGTGGA

a score=23113
s chr3           103761477 764 + 160039680 CATACTCACTGGCTGCTGTGAGGAAAGTCCAGGAGGTGACTCATCGTCACAAATTGGTGGTTAAGAGTCTTCAGAGGCGTGATTCTCTTATCTGCATCAATCGTCAGCATTTTCTTTAGAAGATCAATATACTCTCTCCGATCTGCTTTCTCTGCTAACATATCTGTCCCCTCTAAGTCTGTAGACATATTTACCTTTGCAAGCAAAGAAAA--TTAGAAATGTTGTATTTCCTGACTTAAATAGTACATTAAGAGCTTACTGTGTCTGCTTTTTCTCTCCAAACAAGAGAAAGCAGATATTTAATAGAAGCATTTTAGAAAAGAGAAAACTGGGGAAATTAAGTTTAATTACAGAATAATAATTCCACAGAAGGAAACTCT------CTGCCTATGTGGTATAATAGAGCTAAATTGACTCTTGGCATTAACATTTTG----AAAGTTGTTCAGCAAAAAGATGTTTTTCATTATTGAAATAAACAAGTTTCTATCATTGAAAAAATGAAATGGCATAGTACAAAGCAGTTAAATTTGGAATGCAGTAAGCATTCTTatgtggactgtgggagtcacactcaggatgtggggcgtggtagcaagcccccttcctcatgatg--gagccatcttgtcagcccAGAACAAAACTTTCAAGTGTAATGCTAGCTCTCTTCATTAGCTAACACAATAGGCAGTAAATGTGAGCTCTTAGACAATTACTTATGAGGTAGAGACAGACAAGAGAGAAACCTTTACAAATATTCCTCCAAAATA
s HiC_scaffold_1 114141147 709 - 233722169 CATACTTACTGATTGCTATGTGGAAAATCCAGAAGGTGACTCATTGTCACAAACTGATGGTTAAGAGTTTTCAGGGGAGTAATTCTCTTGTCTGCATCAATTGTTAGCATTTTCTTTAACAGATCAATGTATTCCCTTCGATCTGCCTTCTCTGCCAACATGTCTGTTCCCTCTAAGTCCGTAGACATATTCACctt------caaaggaaaatttagaaGCATTACATTTCCTCACTTAAACAGTATATTAAGCAATTAATAAG-CTGGTTTTTCTCTCTCAAGCAGAATAATTAGATATTTAGTGTCAgcatttgagaaaagaaaaaccaaggaaaatt-atttttattatat----ataaatttataagagAAAATTTTGTTATACTGTCTAAG-----GAACAAAGCTGAGTAAATTCTCATTATTAAAATTTTGGGACAAATAAGTTAAACAAAAG-----TGATTATTACTTAAATATAAAAGTTTCT---ATTGAAAAGGTTAAAGACCTAagtataaaatgttta----ttaagagttgt-----tttttttttcgaaactggggattgaactcacgaccatgcatttgtcaggcaggc-----acttatgttgctgagctaaatccctggccttca--aACAGTTTAGAACATAAT--Tagc---------------actcaata---aataaatgttagttCGCACTTAATAGTGAATATGG--------GACAAGAGAGAAACCTTCATAAACAGTAATGTAAAGTA

a score=34329
s chr3           103763631 1219 + 160039680 AAACAGTTAAAAATGTCT------CTAAAGAAGCATGTCACACTCACCTGAGCCATGTCATCTAAACAGTTAAAAATGTACTTCCGAGCTTCTTTTGACTTTATTCCAGTTTCCAATTCATGTTCTTCAGGTGTCTATAAAACATGAATTTTTT-----TACAACTTTACATTATTTTTACATTTTTAATTTAATCTGAAGCCAGAATACTGAGATTGTATTGTACAGTGTCAACTACAGAAGGCAAAGATAGCACCCTGAAAATTTTGCAGTGGAGAAGTGTGGCCATCCTTTC-AGCAATTCTAAAGGGGGGTGGT----------GCGGTCATGCCGCAGAG------CACTGACGGTCAGGTGAATAGGATGTTAT----TGTCTCTTGACGCTTCTTGGACATGGACACCATATGCCAA-TACTGTTTACTAGACTCAGAGGCAGAGGATCGT-GAGGTAACTTGATTTCTCA----CACTGAAG---AAGTAGGCTCAGAATTAAAAACT------------------------------CTTATTTCAGGAAACCTCG-AAGGCCTGAGTGTGAAGAGTTAGAAG--------------------------TGAGATCTCCGTGGCAG--CTATCACTCCACTTCCCTAGCTCCCACACTTACTGAGCACTGC---TCTCCAGTC-CCCTCAGCTACTGACCCTGCTTATTCAGCACAGCCTCAGGCAGCTGCATTGGC--TTCA----------TTATCTCAGT----------------------------------------------------------------------------------------TTTTATCCCAGCATAAGGCTAAACAGA--CTATAATAAGTTTTCAAGGGGTTCTCTCTCCTGCAAACATACCCCTCCCCCACTTCCCCTCCTCTAAGTCAAGACATTATTCACTAAAATCTAAATCCAAAGTTGGGGTAGGGG--TACAGAAATGGGCTGTACAGTAGG-AAGACATACCTTAAGCCTCCACAGTGGGTACCCCAAATTAGGATCTCTGTTAAAAAACCTGGTTGTTTTTGTTCCGGCACTGAGAAGATACTCAGCTGGCAGGCCTTGTGTTTGTGAAATATAGCGAATCTGAAACATCAAAACCATCAAACATCAATTTCAAGTGGAAA--AAAATTATCAAAAGCTTTT--ACACTGAAATAGTAACTCTGGCCAG----AAAAGGGGTGTGTCATG-AAGAAATTAACTCTCTGACCAACACAACTGAAATGCACCTGTAAACAATC--TATACACAGAATGCA-CAGCCAT---AGGGAATACCCAACTATTTACTTAGTAACTACTGTG-------AAGTACTATTTTAAACAAAACTCAGTTCTGAAATATTTTTAGTGCAATCTTTTTTCTCA
s HiC_scaffold_1 114142248 1414 - 233722169 AAACA--TACAAATGTCTGGCTTTCTTTGAAAGC-TGCCATACTTACCTGAGCCATGTCAtctaaacaattaaaaatgtacttccgagcttcttttgattttattccaGTTTCCAACTCATGTTCTTCGGGCgtctataaaatatgaattttttaaaattccatctttACATTAGTtcca---gtttaa---aaattaaagccaGAATATAGACATGTTGTC--ACTTTGCCAACCATTGATGGCAGAGATTACAATCAGAAATTCT-------GATAAATGTGACCTTATTCTCTAACCACCCTATCGATAG-TGATAAACATGCAAGCAATAATGCAGTACAGTTTATTCAAAGATGGCAGATAGGAAAGGgtattatcatttttctcttgaagATACCCTGAAATGAAC-TGATATTTCAAATGCTATTTGATAGGCTCTGGAGCAGAGTGTTACAGAGTTCATTAAATTACTCAAAATTACTCAAATTAATGGAGGTTCAAAAgtaaaatgtagatttttgttaaaaaaaaagagctgataACTTGTTTCAAGAAAACACATAAGATCTGAATGTCAGCagttagaaaattattttgttttatcatttatacTTGGAATTCTCCACAAAAGAACAATTACTAAATTTCTCTAGTTCTTCATATTACTCAATAATACCATTCTCTATACATTCTCAATTGCTaattcaaaatacacaaaataaccTCAGCTAACTAAACTGGCACTtaaggctggaggtttagctcagtgggataagtgcctgcctggcaagtgtgaggtcatcagttttgATACCccctagcaaaaaaaaaaaaaaaaacctagcacTTAATTGTCTTTTAACTAAAGAAAAGGCCAAATGGATACAATGAAATAATTCTGGAAAGTCTTTCCTCCTACAAATATACTTG-----CTCTTTTCCTCCTCTACCTCAAAAATGTATCATTTAGAGCCTGAATTCAAAGTTGTGGATGGGGAGTCCAGCAATGGGCAGTACAGAAGGGAAGACAGACCTTAAGCCTCCACAGTGGGTACCCCAAATTAGGATCTCTGTTGAAAAACCTGGTAGTTTTTGTTCCGGCACTGAGGAGATATTCAGCTGGCAGGCCTTGTGTTTGTGAAATGTATCGAATCTGAAATACCAAAACCATCAAACATC-ATTTGGGGTGAAAAGGGAAATTAGTAAAGACTTTTTAaccttaaaatattaatttaagcCAAGAATAAAAGAAGAGTGTACTGCAAAAAATTAACTCTTTAATCAATATTATTGAAATTTAGCTGTAAATAATTAGGAAGTACATAATATATTAACCTTTCCAGGGGTAACCCAAATAATTATTTAGTAATTATCATGTTACTATATCTGCTATTTAAAAGgaaatccagtttttaaa-attttt---------ttttttccca

a score=21792
s chr3           103769194 609 + 160039680 tttgtagataataatataatagaca---------------atttgtcaacatctattttatgcacttaggaca----------cccttaattttttcaatattcctgggctgtgtggtc--tgtttttcaaattgtt----------------------gtgaaAGCACTC-----TCTGTATGCTCTCTCTCTGTGTGGACCTGTGCA-GTCTGA------------AGGGGTGG--------TGCCTTCCACGTCCATACAAATAAGCACTCTTACCTGATCGTATTCTGAAGCACCAGGATAAAGAGGCCATCCCAGGAACAGCTCAGCTATTACACAGCCCAGTGACCACATGTCAATAGCTTCACAGAATGGTAATCCAAGGATAATTTCAGGAGCTCTACAGCAAAACACAAAGATATTGGATAAAATAACAAACATTACTTGGGGAAATTAACTATGGTAACTAAATTCTGCTGCAGTGTCAGCAACAGGCATACTTGTTCAAGGGACTGGAAACCAACCATCAGTACACAACTATAGAGTcaaaactctacggcctgatgtgtttcagaattcacaggttttgaac-tgcagaaagataatatagaacataatctacatatcccataa---ttccactggagttcatgacagtgccacataattgaacacattaatatct
s HiC_scaffold_1 114150604 653 - 233722169 TTTGTATATACTT-TATAATAGAAATTACCTAttatctatatatatacatatatatcctaTGCATTTATAACAAAtctaatatttcttaattttttcaataCTTCTAGGTTACATggtaagtatttttttaattatcacaagtgtccaaaaagaaaaaggaaaaaaaagtcaaaaatctgTGTG---------TAAGTGGATCCACACATGTCAAACCTCTGTTGTTCAGGGGTCAATCGTACTTGCTTTCCGTTTCCATG-----AAACACTCTTACCTGATCATATTCTGAAGCACCAGGATAAAGAGGCCATCCTAGGAACAGCTCAGCTATTACACAGCCCAGTGACCACATATCAATAGCTTCACAAAATGGCAATCCAAGAATAATTTCTGGGGctct--agcaaaaacaaaaaatataaaataaa-----------catattggGAAATATACTATGTTGACTAAAT--TGTTTCAGTATCAGCAAAAGGTATATTAatataatgaaactgaaaacaatcTTTAGTAATCAATCAT----CCAAAACTCTG-GGCAAGACGCATTTTAGAATTCAGAAATTTTTTACGTTCAAAGAGGTAACAAAGAACATAAACTATACATTACATAAAACTACTAATGAAGTTCAAGGCATTGTCCCATAATCAAACACATTAATATTT

a score=17297
s chr3           103771401 592 + 160039680 aaagaaagaA-------AAGTGTTGTGCGATGTTGCAAGCAACTGCAGCCATTTATGATGGATGCAACTTCACAGTTCAATGAAATCCCAACCACTATAGTATGCCTTTATGATCACACAAACCTGATAGGAGCATTAATAAAGCTGAGAATGAGAGTACCCAGGAAAAAATATAAAAGCTTTTCTAAAAGTGAAAAGGAAAAAAAATGTCTGACTTTCAGTGTGCAGCAACATTAATTTCCAAGTTCATGACAACACCAGAAATAGCTGGCAGGGCAAGTGGACAGGGCTTGGTGCCAAAATAAAAACTGGGTTGAGAACATTCCAAAGCGTCAACT---GAGCAGCGGG-CGGTTTTAACGGTTCCATCTTATGA-GAAGACAGTTT-----TGAAAGGGTAGGTCGGGAGGAATGGCCA-----------------------AAAAA----------------------------CACAGCTTA--------------------ACAGTAATCCCAGC------TTTTCCAACAACAAAACAAA----GGAAGATCAGGTGGAATCTGGAATCATCCAGTCTCCTGGTTCCGGCT------GGTTCTGGAATGACAAAAGCAGCTAAGGA-CTCTAGGGAGAGCTCACCCTGGACAACCACGCTCCCTTCCTCAGAGGCAAGGACTACAGAAAA
s HiC_scaffold_1 114152996 672 - 233722169 AAAGAAACAATCCTTACAAGTGATATTCT-TGTTGCAGTTGAATAGAGCCACATATTACTGATGGAACCTCAGAGTTCAATTAAATTCACAATG-TATAGCATGTTTTTAAGACTGCACAA----GATAGGAACATTAATAAAGCAGACAGTAAGAGTACTC-TGAAACAATATAAAGGCTTTTCTAGAactgaaag---aacaaaattttctATTCACAGTGAGCAGAATCATTAATTTTCAAGTTCATGACAGTGCCAAAAATAGCTGGCAGGGGGAGTACAAATGGCTTGGTGCCAAGGTAAAAACTGGGCTCGGAACATTCCAAAGCATCAACTAAAGAGCAGCAGATTGATTTTGCCATTCCCACCACACCAGGAAGACATTTTAAAGCTCAGAAGGTAGGCAATGGGGAATGGTCAGGTCACTCACTCAATAACCTTTGAGAAAGTTGTAATGATATATAATTGTTAGTCTTCAAGGCTTAAAGTTTCAAGGAAGTTACAGAAAACAATTCCAGCCCTCAATcctcattttataaaacaaatgacTGAAGATTGGCTGG-----------ATTCAGTTTTTTCATTTGGTCTCACCCAGCTTCTGGAGTGACAAAAACAGCTAAGGATTTCCAGCAAAAACTCACTCAAAACAGCAACTCT---TTCCTTACAAA-AAGGAATgcatcaaa

a score=106942
s chr3           103776661 1921 + 160039680 CAACATTTAAGTACTGTTACAAGAATATCA----TAAAAGGATCTTGTATTAGAAGTACTAATCTAGAAATAAAAATCACTAAGCTAT------------------------------------------------CTTGTTGAGAATGTTCAAACAGAAGAC----CACAGCAATCATCTAATTCAATTTTTGCTATCAGGAGGGaaaaaaaaaaaaaaaaaaaaCAGAATAAACTGCTTCTAAGGTGAAACCTAAAGATATTCCCAAAACATTTTACATACAAAGGTATGAGCTGAGGAAAA---ACAACATCTGTAAAGATTGATCATCTCTGTACAGTCCTTCAAGTGGGAAAAGTT------AGTTAGATGTAATGGTAGTCAAGAATGAACCAGATACTAGCACAATTCAGCCAG---CAATCTTCAGAATTAAATGTGAGTTATT-TGCTAGTACTAAGTAGGATTGAAGCAAGAATTGTGTGTTACTTATAGGAACTTCACATATACACGTAA------GCTGAGACAAATCCTGCTGCCATCTTGGAATCTAGAAATAAGTAGGCTCCTGGGTAGA-----------------------ACAGTTACAGTTCTATCCTATGCGTGTTAAGC---ACAGTATTTTGTACTTGCCTGTAGTAGCGTGATTGCAGGTAGGTTGAACACACGGCTTTGGAAACATGACTAGCAGAACCAAAGTCAATGACCTTCACTCGGTAGGGTTGGCGAACTGGATCGACTAGCATTATGTTTTCAGGTTTAAGGTCAGCATGAATCAGACCAAGACTCTTCAGCTTCATCAGGGCTGTGGCCACCTGCTGCAAGATTGGTCTTATGTACTTGAGTGGCAGTGGGCTAAACTTGTTCTGCTTTAGAAAATCGTACAAGTTCTGCTCCAACATCTCAAACACAAGGCAGGTATGATTCTTGTGCTGAAAACACTCATAAGAACGGACAAAGTTATACTCATCAGCATTTTCACTGCTTAGGCGGGAAAGGATGCTCACTTCAATCTGTCCTTGTCTGGCATAGGAGGGGTGGTTCTTCAAGATCTTAATGGCCACAATTTCCTTGGTGCTCCGCTTCCAGCACTTTGCCACCTGTCCAAATGTCCCCCGGCCTAGGAACTCCAGGACTTCATAGCTGTTGGTCATAGAGCAAAGGATCTCATGCTGGACCAGCTGGTAATCCCCTTCTCCGCTGGAACTGCTACTCTTGGTGGTCACAGTGGTGGTCGTGGCAGCAGCACCCACCACGGTTCTGTTCTGCAGCATGAGAGGGGGGTGTTCTTCTATGATCTGCACGCTACCGTTGCTCTCCACTTCCTCACTCTTTCTCTTCAATCCACATTTTTGATATGGCTCAAGCAAAGAAACGTTGCTCCTGTGAGTCAGGGTCTGGCTGCTTTGGAAGGTTGCTGTAGCGGCGCTGCCTGAGCTATCAGCAGCTGTTACCACAATATGCTCCACGGCAGGAGCTGGGAGAAGGAGGCCCTGGTCGTAAGCAGGAAGATTGAAATTTGCTACCTGGTGAGAGGAGCTGGCTTGCCCTTGTGTAGCTGGGAGGGTTTTGCTGTGGGTATAGTATTTGTCGTTGCTGCTCTGTCCTGAAACATCCCAGCCAGAGGGCTCTATTTTCAGTTTCTTTGCACTGCAGAAGGCACTCGACGACACTGATGGGGGCGAAAACACCTGCAGCTGTGAGGCCATACCTACACGGAGAGAAGGAAGAATGAGACCACAGGGCTCACG-ATGCGAAGCTCACCAACAGCTCATGTGAGAACAGGTGTAGCTGATAAG------ACCACACTGTACTGTCTCCCTCCTCTCAAAGGCAAGTCACACATATAGTGTCCATACTGTGCCAAAGCAAAGGCTAACTACTCTGTACAAGTCAAACATAAAATAGTGTTCTATTCT--CTAACAC---TGGAAATGATT----GCCACTGACCAAAAGAAATCAACCAG-CTGATGACCAGGGTAGAGTATCTTCTGAAGAAGT
s HiC_scaffold_1 114160868 2005 - 233722169 cagtATCTAAGTACTAATCCAGTAACTGTACATTTAAAAGACAGTTTCATTAAAAGTATCAATATGGATCTATAAAGCACTGAAGTATGAATACTGCAGTCAAGGTTATAGTCGGACAACCAAGTTAATGCAAACTATTACAaagattattaaaatagaaaaaaaaacagagaaatcatctattctaatttttgctgttat-------aaaaaaaataaaatgtaaaagaataaaatgctgcTAGAGTCACCCCTGGAGTTATTCTCAAGGCATTTTACCTGCCAAGACATGAGCTTGGAAAAATCAGCAGCATATGTCCAAgctaattacaaataaaatatctttttatatttaaagattcCTTAAAATTAGATATAAGGGTAGTAAAGAAT----CAGATGCCAGTAGAACTCAGCTAGTAACAACCTTCAAAATCAGAATGAATTCATTCTTCTAGTgctaaataaaatttcagaaagaagaaaaggttacCTATAAAAGTATCAGACACACGTGTAACAATGAGCTAAAATATGTCCTATTTCCATCTTGGcatctgtaaataaataaattcattactTGAGTCTCATGAAATATGTGCTATATACAAGGCCAGATCTTCAATACACAT---AAGCTTGACAGTATTTTGCACTTGCCTGTAGTAGCGTGACTGTAGGTATGTTGAACACACAGCTTTGGAAACATGACTGGCAGAACCGAAGTCGATGACCTTCACACGGTAGGGCTGGCGCACTGGATCCACCAGCATAATGTTTTCAGGCTTGAGGTCAGCATGGATCAGACCCAGGCTCTTGAGTTTCATCAGGGCTGTGGCTACCTGCTGTAAGATAGGCCTGATATACTTGAGTGGCAGTGGACTAAACTTATTCTGCTTCAAGAAGTCGTATAAGTTCTGCTCCAACATCTCAAACACAAGGCAGGTGTGATTCTTATGCTGAAAGCACTCATAAGAACGGACAAAATTGTACTCATCAGCATTTTCACTGCTCAGGCGGGACAGGATGCTCACTTCAATCTGGCCTTGTCTGGCGTAGGATGGGTGGTTCTTCAAGATTTTAATAGCCACAATTTCCTTGGTGCTCCGCTTCCAGCACTTAGCCACCTGCCCAAATGTCCCTCGGCCTAGGAACTCCAAGACTTCATAACTGTTGGTCATAGAACAAAGGATCTCATGCTGGACCAGCTGGTAATCCCCTTCTCCACTAGAACTGCTACTCTTTGTGGTCACAGTGGTGGTTGTGGCAGCAGCACCCACCACAGTCCTGTTTTGCAGCATGAGAGGTGGATGTTCTTCTATGATCTGCACACTACCGTTGCTGTCAACttcctcactttttcttttcaatccACATTTTTGATATGGCTCAAGCAAAGAAACGTTGCTTCTGTGAGTCAGGGTCTGGCTGCTCTGGAAGGTTGACGTAGCAGCACTGCCTGAGCTATCTGCAGCTGTTACAACAATGTGCTCTACCGCAGGAGCTGGGAGAAGGAGACCCTGGTCGTAAGCAGGAATACTGAAATTTGCTACCTGGTGAGAGGAGTTGGCTTGTCCTTGTGTGGCTGGGAGGGTTTTGCTGTGAGTATAATATTTGTCGTTGCTGTTCTGTCCCGAAACATCCCAGCCAGAGGGctctattttcagtttctttgcactGCAGAAGGCACTCGACGACACTGATGGGGGGGAAAACACCTGCAGCTGTGATGCCATACCtataagaacaaaaagaa-aatgaggccACACTACTAAGACATGC-AAGCTTAGCAACAGCGTGTATGAAAACACTTATAAGTGATAAAAGAAACATGATGCAATAATATTCCCCTTGTTTCAAAAGTTA-------ATTCAGTCTTAACCTTAT----AATCATAG---AAATACTATCCAGAAGT---AAATACAGTAGTGTTCAGCTTTGCCTACTACATTTGAAAAGGATCACAGACAACTGATCAAGAAAAAT-AAccagtttgaaaataaatgtagaGTATCTTCTGAAGAAAT

a score=19011
s chr3           103780646 882 + 160039680 CTGTTTTCTTCTT-CACTTCTATCACCCAGGTCCTTCCACA--TTCTATTAGTGTAACATAAACGCAGTATTTGCTGGAAAAAAGACGGGACTCCTGCCTACCAACTTCATTATCTACAACTCACTATCATTCGTATATAAACTGCTGTATTCTCAAAtgttttgctttgttttttgttttgttttgttttTTTACACATCCTTCTGTTTTATCTGCATGGTTCTTATGATATGGGTGAAGTCACCACTCAAACCCACATAGCACAATTTTACAAGTCATAAGTAAATAAACATACAATTAGAAAGGAAGGAAACATGACAACGGATGTTACAGAGCATCAAAAGCACTGTGTAGGGCTGAAGCTGAGGTCTGAAATAGTGTTTGCCCAGAATGCACGGGACTGGGATTTGATCCCTGGCACTGTGTATAAAGAGCGAGCGGGGAGGGGGGACACGTGTGCACTTCTTTGTGCTTGATTACAACTTAAAGCTATCTGCAATGG---AGTCAGCTGCAAAGAAAAAATGTATCTCCAACCTTCAATTTCTAAAATGGTGCTTGAATTTACTCTAAGCAAGAGTTTCCATAATTTATATGAACCTCAAAGAGAAAAAAAGCACAAGTTGAAAGCTAAGGCCAGTGCACTTCAACTTACAAAGTCATGAATATGCAAAGCATCTTGGCCTACTTTCATCACCTATGTAAAAAACCAAATAT---AAAAAAAAAACCTGAAACCAAGTAGTTCCTTTACTAAATTTACCTATTAAAATACATGC-AAAGCATTACTTGCCATCATAAAATTGAGCCAAACTAAAAAACAGTAGGTAAATCATC--GATTTGTTTTCCCTACTGAAATAGAAATTTAAAAATTCAACCAAAAACAAGGA
s HiC_scaffold_1 114164325 724 - 233722169 ctgttttgttctttcccATGTATCATTACAG-CCTACCACAAACTCTATTAATACCGT-------TATTATTTGTTGAGTGAAAGAACTGATACCTATTTTCCAACCTCATA--CTACAACTGCCGGCCACTCACAC-TAAACTGcagtattttcaaattattt--ttttcttctttatttattttatttctcc----------------tatcTGTACAACTCTTACAATACGGGAGACTTCTCCACTCCAATACATATATCATAATTTTACTAGTAATAAGAGAATAAAC--ACAACTAGAAGGTAAGGAA--ATAAC----GATGTCACAGAACATCAA-------------------------------------------------------------------------CTAACAATGTGTA--------------------------------CATTTTTTTGTGCTTGACTACAATTAAAAACCATCTGTACTGAACTAGTCAGTTGAAAAGAGGAACAG-ATCTTTAACCTTCAATTTCTACATTGTGCCCTggatttacttt---------tttccataatttctatGAACTCTGAAGAGTAAA-----------TTAAAACTTAGGTTACTGCAATTTAA-GTGCGATGCTCTAAATATACAA--TATCTTGTTCTATCTATGCTGCTGACAT--AATaccaaatataacaaaagaaaaatctcaaactaTATATATCCTTTATGAAATTTTCCTATTAATATACAGGTAAAAGTATTTGTTATCATCCTAAAACTCAGCCAAATTAAACA--AGGAAGCAAATCTTCTAAATTTGTTTTCCACATAAAAACAAAGCTTTGCAAATCGGGAGAAGAACAGAGA

a score=20743
s chr3           103781918 1292 + 160039680 TCATAACTAGGTAGCCTTTAAAAATATTGCATCT-TTAGAATGATGTTATCACCAACTTTTGACCCTATAGCAAAATTGCAAAAACTTCGAGTTTTTAATTCAACATCACCTTagagaagagagagaaagagagggggagaaagagggagagaACATGAGAACATGTTCTAGGACATTTT------------GAATATAACT-TAACTCAGAAAAACACACCTAGTCCACACCAGGCAAACAAACAAACAGAACCAAAAACAAAAGAAAAAACCCCAGAATTTCATGA----GCCCTTCT-------CCCAGGTACATATTGCAGCACCGAGACTCTT--CATGTGGCTGACACTCACTCGACCTCAG-TAACA-AGGTGAGAAGTAAACACAGACTCAAAATGGCCT---AGAAAACCCAATACTGTTATTTATACTCCACTCTTTCAGGTGAGGATTTAAAAAGTCATTTCTAGGCAC---AGATACTGTCCCACAAAT--CTGCCTTTGCAAATGAGGAT-CAATTCTCTTGCTAGGTAAGATTTCCCAAAAAATATGGGGTAGAATTAACAACTGTGGGTATTTTTCTATATAGAACGCTCTGTTAAACAAACCACAAAC-TTTTCAGTGCACAAGAAGATAGCTCCCAATAAATCAAATGCTATTTCTGACTTCCTGAAA-TGTTTCACCTCTTGGATCTAGCAATAG----------TTTCATTTCAAAAATCACTTTCCAGTGACAACTAACGTGATATAATAACAAATTTGCTCCCTGCAATAATCCCAAACTAGAATTAATAGGCAAAGGCTGTTTAGTACTTGTGTTTACTACTCAAAAGCGAGCTGGCCCTTGCTGAAA--AAAGGCTTTCAAACACGGTTATTTCAGAGCTTCTCTACTCT-------------------------ACAGACTCCAGACTGCAATTACTATAGGCAGGTGG----TCCTGCCACAAGGAGTTAAAAAATTGTAACACTGCATGGAGTGGTTTGGTGTCACAGCAAAGATAATCATTTTCTCAAAGCTTCTGTCCCCttttatcaaaacagggtttctctgtgcagccctggttgtcctaaggctcactttgtagaccaggctggcctcaaactcaaagatgccccggcctctgcctcccaagtgctgggactaaaggcgtgtgtaacTTCCTCATCCCCTCCCCCATGTACCTATACTAAATTCATGCTGCTTTTGTTCAATGTCATC-TTTCCTCTCTGGCACAATTTAACAACCGATGACCTAAATAACCTAAAACCAATATTTTATATTGAGTTCTTCC--AGTCATCAGTCCTGACTTAGATGGTCAAGGAAGTATACAT
s HiC_scaffold_1 114166672 1154 - 233722169 tcACAACCAGATATCT----GAAATACTGTATTTATGAGAGTAAAGTTATTGCTAACTTTTTACCAAGATgcaaaataacaga------gaatgatGATTTCAA----ATCTCAGAGACTA--------------------AAAAAGCACAAATTCTAAG--------CTAAGATACTTTTctatataaaaagaatataattctTATTCAGAAAGGCAAATTTAACCCac-----------------------ccaaagggaaaaggaacCACCC-AGAATTTCACAACAAGGGTATGCTGTGTGAAACTCAGTGCACATTTCACCAGCAGGACTGTTACCATGTGGCTAACACAT-CCCAACCTCAGCTAACACAAGTAGGAAG--AAGGCAGAATCAAAATGGCCTTTAAAAAACTCCACAACCTTTATTTGTATTATACTCTG--AAATTAAGCTAAAAGCAGCACTTTCTACACAATAAAGATACTATATTTCAAATACTTGCCTTTGCAAATAAAGAGGCAATTCTCTGCCTTGACAACCCACACCCGCAGAAAAGGAACAGGATTAAgatctgtttaatttttactatgtaaGACA----GTTAAgcaaattacaaatattttcaactAATATGAGAAGCATTCCCAATAAACTAAAAGTTACTTCTGACTTCCTGAAAATGTTGTAGCTCTTTGTTCTAGCAATGAATGAAGTCTTTTTCACTTCAAACCCCACTTTCCAAGGAC--TTAAC------CAATGACAAATTTTCCCACTGCACTAATCCCAAACTAGAATTAAAAGGTAAATATTG----GTAGATGTACTTACTGCTAAAAAGAGAATTGAGTCACACTAGAATCCAAGGCTTTCAAAAACA---AAGGAACAGCTTTCCCACTCTCTGGGGCAAGGTCACAACTCTTTTAACATCATTTACAGTATTAGTACTATAAGCTGATTGATAATCTTATTATGAAGAATTCAAATATTATAACCCTGAATGGAATGATTTAGTGTGACAACCAAG-TTATCATT--------------------------------------------------CCTGAATG------------CTTTGT------------CCTCAA-------------------------TCCTCAGTG---------------------ACTTC--CATCTTTTCCCCAGCATACCTATAATAAATTTTTGCTAAT-------GGTGTCACCGTTGTATCTTTAACACAATTTAACAA-TGGTAGCCTAAATAACCT-AAATCAGTATCACATATTGATTTTTTCCCTAGTACTTGTTATTAGCTGACGTatacaaagatatatatat

a score=131437
s chr3           103787189 6430 + 160039680 [encoded data, 7076 characters]
s HiC_scaffold_1 114170677 6058 - 233722169 [encoded data, 7076 characters]

a score=5138
s chr3           103789296 120 + 160039680 AAAAAAACGACCTGCCAACCAGCGCCAACATTTTTG----TCAGCTGCTTTACCGGTTTGGCAGCCTCTAGCTTCAATCTCAAAAACTTTACCGAAATATTCTTCAAACCAAGAAGAGTATCTT
s HiC_scaffold_1 114172679 124 - 233722169 aaaaaaaagatttacaagCTCTCATTTACCATTTTGCTGTTAAGATGCGTTACTGGCTAGGCTGCATCCAGTTTCAACCACAAGTACTTTACCAAAATATCTTTCAAGCCAAGAACAGTATCTT

a score=4462
s chr3           103794779 101 + 160039680 AATAAACAAACAAATTGAAAGAATGATAAATGGACCTCATTAGAGAAACATAATGGGATTTGCCAGCAGTGTGGAAGGTCATTTTAATGTGTGAGATTATG
s HiC_scaffold_1 114191632 101 - 233722169 aaagaaaagagaaatggagactAGAAGAAATAGAGCTAACTAGAGTAACATAATGGGATTGATCAGCAATACAGAAGGACATTTCAATGAATGAAATCATG

a score=12337
s chr3           103797065 241 + 160039680 GCCATCCTTGGGATGAGGGTGGGAAACAAGACTTCTTTCTATATTTCAAGGATATTGCTTCAGAGTGTCAAGGCCTGGTACTCTTGATTT----------CTTCCTAAGGCTTCCTATGTTGCAACCGTTTGAGTCATAAAGATTTGGAATAACCACTGAGGTACACAGCAGAGGGATCAAGGACACATGGAATTGAAAAGCAGCTTTGATGGTACCATGGGCTAAAATTTGTGGTGATACTAGTTGTGTG
s HiC_scaffold_1 114193189 249 - 233722169 GCCATCCTGGGGATGAGATTGGGCAACCAGACCT-GTCCTGTGATCCAAGGAATTTGCCTTAGGATACCACAACTTGGTACTCTTGATGCTGAAAGATGCCTTCCCAAGGCTTCATATGTTTTAAAAGGTTTAGTCATAAATGTTTGGAATAACCACTGAGATACATGGGGGAGG-ATCAAGCATATAAGGAAATGAAGAGCAGCTTTGAAGATAGCAGAGGCTAAAATTTGTGGTGATACCAGTTGtgtg

a score=11273
s chr3           103797295 386 + 160039680 CTAGTTGTGTGTCCTCTTCCAGTGAGTGGTTCCACCATTCTCATGTAGGAGTTGAAAAAAGAAAACCAGAACTGATTCAAAACTAATGACTTACAAAGATAAGGACCCTATAATAAAAGTATAAAGACCCTAGAGCCAGATTAAGCAT--------------TCC----TATTCTAAAATGTTCATCCCAGCCTGTTTTGCTCTGTGTTATTTT--AGATTCG--GAGTCTCTGATCTACCACT-GTTCTGTTGGCTCCTGGCTTTGTCTGAGGATTTTCCAGTTAAACTTAGCATA-ATCAAACTGAAATTTACCATCATTTTGTTCCAATCCTTTTCCATTTGGACAAATGAGTCCTTGACTGCTTCAGGTAATAGCCCTACTGGTTATATGACTAACCTAGATCCAG
s HiC_scaffold_1 114196999 385 - 233722169 CTGGTTGTAT-CATTCTTTTCATCAGTGGTTCCACCTTTCTTGTGTAGgagttgaaaaaaataatttagaactgATTCAAGGTTGAAGGTTTACAGAGATGA------TAGAGTAGCAG----------ATAGAGCTACATCAAGCATCAGCCCTTTGTTTATCCACAATGCTCTGAAGTGCTCAGCCAAACCTACTCTACTTTGTACAACTTTTCAGACTCTCTGGGCCTCTTATCCACTacttgttctgttgcattttgGCCCTGTTTTGGGATTT-ACAGTTAAATCTGTTGTGTATAGCATTTGAGTTTTACGTGATTTCACTCTACTCTTTTTCCATCTGGACAAATGCTTCTTTAGATGGTTCAGGTAATGGCTCTTCTGACTG-------GACCTGACTCCAG

a score=96975
s chr3           103801445 2888 + 160039680 GAGAAGATCAAAGGCTTTTTTTTGGGGGGGGGGGGACACAActcaggatagaacccaagacttcagcttgctaaacacacat----cctacca--aagctacacctttagcTACGAAAAC-----------CAATCAtgtgccaggcaatgaactagggaattttaccaat-aatctgtatagcaatcatgagaggtaggcatcccagcccccacattacagctgagtaa--ggctcCTCTATTTAAACAATTTGCCATGTGC-CCTGGATTCCAGCC-AGCCAATGTCCAGGTTTCCTGTTGAACCACATGCCTCACCTGCTGCAGTTCCTATGAAGCCCTTAG-AGGTTTGTAA----GGTCACTGACAAAAACAGAACTGAGTACAGCGTGTCCAAGAGCAAAGTCTTATTTTGCTCACTAAA--CTTCACTTCTCCCTCCTAAAGTAGCAAAGCTCCTCCCTCCTCCCCAAGGGTAAGAGATGGCTTTCTTTACTGCTATGGCTCAAGGTTCCAGGCCCAGGCCGTT---CCTCGCCTG--CACCCTCCCAGACCGCATTTCCTCATGGCTGTGCTATCAGCTGTCTTGCTTATTGGTTTGGCATTTTGTCAGGTTATGAGCAGGACAGGGTAGAACTGCACACTCTGACCCGTTCCAGCCAGCTGGCTCCTTGGTCTCTCCCCTGGATACTAAAACAAACAAGCTCTGTGCTCTGGCTCCCTAATTCAAACTTGTGGGGGTGGGGG------GAAAATCCCAGCTATGTGAACAATTGGA-GAATATCTGGCAGCACATTTGATCC-CTGTAGCTTTA-----ACAAAGTAGTGTCTCCAAGCATCCAGTAGCTCTGACATACTCTAACCCTTAATGTTCAGCTTA-TTCCGTGTACCCCCTTGGTGCGTGGTGCCTAACCTCCAAA-TGGCTATGTTCCAGATGGATGTCTCATGACAGTTACGAAACCCCTTCATGAAGAAGGAAGGTGTTAT--TTTCCTAACACTGTTTCAGTGCCTCTTCA-TGGTTTCCTGTTCGCTCCGAgaggcaaagacaggaagttccttggttagggtcatgtcacagcaagtcagtgacagtcagggttagaacaggactcctACTTTATCCTCCAGCACCATGAATTACAATCTGAAAACAAA----------------------------------------------------------------------------------TAACCGACATC------------------------------------------------------------------------TTTTATCTGGGACTTGAGGATGGGGA------CAGGACAAATTTAATAACAATATA------CTGGTTCTTTTTGATTCAGACTCTATTTTTTCCACTCAAACAAAACAAAACAAAAAACaaaacgaactgcatgttgataaaggtttgagaaaaactgggttaaaccaagtggaacaaattaaattgctatggaacttcttagaacttttaatgtgcttatgaaca--ctgAATAGTTTATAATGAAA-TCTGTTTC--------ttaaatataataaaattaaaataaaCAA----TATAGTGTACTA--------TAAAGCTACGGGTCTCA--TAGGCACTA-----GGACTTCA--TGAAA----AGC--TTCAGAAGAGCTGCTGGGGTGAGCCCCAGG-----GTTCTTTT----------------------------------AAAGGA----AGACA--------GCAAGCCACCTCCTGTC---------------------------ACTAGCCAACATCCACCGGGCTCAGAACTGCAGGACTGCTACG---------------CTGTACTCTC-------------------------TGGTGTTTTTCCACTTGCTTGTCGAAGTTCCTGGAAGAGAAGCCTGCTTGGAGGAAATGCACTGGAGTGAGAAGGTATTTTAGCGCCAGGCCCCTGGACTCAGGAGTTA---GAGGAACAGCTCTGCTAATGTGAGCCGGGGGAGAACCACAGCCTACGCAGTCACTTTGGTTCCCTCT---CGCTGGTGAGCCACTGTCTCCCCTTGACAGCAATGGGGACTCTAAGCCAATTTTCTCCCTGGTTTCTGGAAAGAGAAACTCATCTATAGGTTGTAATTGCACTGAGAATTCCAGTGGGGCAGTCAACACAGTCGCCATCTTGTTGGAGTCACAAAAGAGGACTGGCTCATCACGTTCTTTCCTGCAGAAGTCTGGGAACAACTGCTTCCTGGCCTGCAGAGGATGGGGGCAAAGCC---TCTCAAGGTGCCCAGCCCAGGGAGAGAGGTTTTCCTTTTTGTGCTTCTTTGAGTCTCTGTCAACTTTAACCTGATTAGCTTTCTCCTCAGGGGATTCAAACACAACACCCTGAGTTCTTGGCCTCTTGAGCCTCCTTTCTAACTGCCAAAGCACATTTGTTTTCCTAGAGGAGGAACTCATGTACTGCTGCACAGAGTGTGGAATCAGAGGCATAGCGAGCCTAGGACTCAAGCTGTCCTGAAAGAACTCTCCACAAGGCTTTTGATGGACGATGGGCACCACCTGACAAGGCCTCAGCGCTGCCACAAAAGCACGGAGCTCGGAGTAAGATGAATGGTCAGAGTACGGGACGGTGTAGATGCTGGGGTGAGGGCTGCGCACTTTCCGGCTTGTGGGGAAAATAGCAATGGTAGGGTGACTCTGGTTCCACTGAAGCATGGCAGAGTGGCAGATCTCCGTATGGTCCACAGCATGGATGCGCCCGGCTTCTTCCTCAACTGTGAACACGTCTGCCAGGCCCAGCAACTGTACCAACTCCAGGCGTTGAGGACTTAATACCACCCAGGTCCGAAACTCAAGGGCTAGTTGCTCCAGCAGTGATTCTTTTCCTAGACTATAGAGTCCTAAATTATGTCCAAGGGGTTGGAGGAAATAAGAGAAAGAAGAGAATGAAGCTATT-AAGACTCTTGATCAA-----CCAATGTTTAGCAAAAATACATAAT--------ATCTATGTAGCAATCCAAGAAGTTTATCAAGG-------TGCATTTAAGATATACAGC-----AGATGCCTGTATGGTGCACACAAAATCCTTTTTTTTTTTTTCTTTTCAGTTCAACAAGAGACGGCATCTACCAAGCATCAAGCGCTGTGGAAACAGATG------AAGAAGGTTTCATCTCTCCAAG-GTACCATCCA
s HiC_scaffold_1 114201514 3167 - 233722169 GAAGAGTTAGAGAACCTTTTTTTGGGTAGAGA----------TTAatattgaactcaaggccttatGATGCTAGACTTACATgtcttctaccactgagctatgctccTAGTCCCAAGAACATTTGAAATACCCCTAAGGTGGCAGATTCCGAGCTAG---AATTTACCATTTAATCCCCACAGCAATTGTGAGG-------------------------TAGTTGAGGAACTGAGGCCCCTATTTAACCAACTTGCCCAGGGTGCCTGGATTCAAGCCCAGGAAACCAGCAGGCTTCCTGCTGCACCATGTGCCTTAGCTGCTGCAGCTCCTGCTGGGCTTTTGGGAGGCTTACAGTGCTGATCACCAATGAAA---GAGTTGTGTGCAGGCTGGCCAAGAGCAaggctttattttcctttctaaattctttattttcctctccaaAAGTAGCAAA-------CTTTTTGTACTAGGGTAAGAAACAGCCTTCTTCATGGCTAAGACTCAAGGTTCCATACTGATGCAGTTTTGCTCCACATGACTGCCCTCTCAGAGCCCATTTCCTCATGGCCACA-TATCAGCTGTCCAGCTTCTTGGTTTGGCATTTTGTCAGGTTTTGAGCAGGACAGGGCAGAACTGTACACCCCCACCCCTTCCAGCCAGCTGGCTCCCCAGTATCTTCCCTAGATACTAAAACAG----GCTGTATGCTCTGGCTCCCTA-CTCAAACCAATGGTGGGGGGGGTGGTAAAAATATGCCAGCTATGTGAACAATCAGAAGAGTATCTGGCATCACATTTGATCTGCACTAACTTTATTTCAGTCAAATAGTGCCTCTCAGCAGCCAGGAGCCTTGGCACACCCTAAGCTTTAATGTTCATCTGGGTTCCCAGTACTGCCTTGGTGAGGGTTGCCCAGTCCCCAAGCTGACTCTGTTCCAGAAGGGTCCCCAGTGATACTAACTGTATTCCT-CATGAAGGAGACAAGAGGTAGAATTTTTCACCACTA----AGT-CCTCTTCACTCAgttcctgtttcttctcagagacagagacaggaagttACTTGAATGGGATCA-----CAGTAAGTCAGTGATAA----GACTGGAACATGCCACC-AATTCAT--TCCACCACCacagtttataatttaaaaactaagctaggcatggtgatgtAGGCCTATAATCCTAAAcaattgggaaactgaggcaagagggtcaccgTGAGTCTGAGGCctgcctggcctacatagtgagttcaagtctagcttgTACTACATAgagatattttctcaaaaaaaagattaaagaagtaTTTAGTGAGTTTTATCTGGGAAGAGGAGACGGGGAATGGCACATGACACGCAAAGTAACAATGGAAATAAcctggttcttttttatttactctttatgT-------------------------------AAAAGGATTATAGGTTCACAAAAGTTTGAGAAATACCAGGTTAAATAAAGTCAAACAGGTTATGTTACTGAGGA-TTTCTAAGAACCTGTAGTGTGCTCATGCACATTCTGAAGAGTTtagaataaaagtatattttaaacacAGTTAACTGTACCAGGACTCCAGTGCACAAGCTTTGAGAAGCACTGCTCAAGGGTAAGCCCACTGGATCCAGTCAAGCGCCACAACAGGGCttcacttgtaatcctagcatttaaggagggtgaggcaggagggtcacaagttcaagtccttcTTGGGCAattttgtgagaccctgtctcaaaatataaaaggactAGAGATATAACTCTGGTAGACTGCCCCTGGTTCAATACCAGTACTAAAAAGAAAGTCTTAATAGTCATCAGCCACTATCTTCAAAACTACGGCGCTGTAACAAACAAGGTTGTCATTCTGTAGTCTCCTGCCTGTACTTCACTATGGGTTTATGGTATTTTTCCACTTGCTGGTCAAAGTTCCTGGAAGAAAACCCTGCCTGGAAGAAGTTCACTGGAGTCAGAAGGTACTTTAGTGCCAGGTTTCTGGACTTAGTAGTGATAAAAGCAGCAGCACTGCCTCTAGGAAACAGGGAAGAATCATGATCTGTCCAGGCACTTTGGTTCCCTGTGGGCACTGGGTCATTACTGTCTCCCCTAGTTACCAAGGGGTGCCCTAAGCCTAGTTCCTCCCTGGTTTCTGGAAA---AACCTCATCC------------------GAAAATCCCAATGGGGAAGTTAACACAGTCACCATCTTCTGGGACTCACAGAAAGGGACTTCCTCATCCCATTCTTTGTTGCACAGATCTGGGAACAATTGCTTCTTGACCCTCAAATGATGGGAGGACAGCTGCTTTTCAAGGTTTCTAGGACAAGGAGaaaggttttctttcttggtcTTCTTTGTGTCTCTGTCAGCTTGAGACTTACCAGCATTTTCCTGAGGAGATTCAAACACAACACCTTGGATTTTTGGCCTCCTTATCCTCTTTTCTAACAGCCAGAGAAATGCTGGTTTTTTAGGGGAGGTGCTCATGTACTGCTGTACTGAGTCTGGAATTAGGGGAATGGAGAGCATCGGGCTCAGGCTGTTTTGAAAGTAGTTCTGGCAAGGCTGTCGACTGACGATGGGTACCACCTGGCAAGGTTTCAGTGCAGCAACAAAGGCGCAGAGCTCAGTGTAGGAGGAATGGTCAGAGTAAGGGATGATGTGGATGTCAGGGTGCGATCTGTGCATTTGCCGGCTTGTGGGAAGGATGGCAATCGTAGGGTGGGTCTGGTTCCACCGCAGCATGGCAGAACGGCAAATCTCCATGTGTTCCACAGCATGGATACGACCAGCCTTCTCTTCCACTGTGAACACATCTGCCAGGCCCAGCAGCTGTACCAACTCCAGGCGCTGAGGACTCAATACTACCCAGGTCTGAAACTCCAGGGCCAGCTGTTCCAGCAATGACTCCTTTCCCAGGCTATAGAGCCCTGAATAATA-CAAAAGAATTGcagaaagt----gaaaaaagagaaTGAGGCTATTGGAGAATCctaacaaaacaagcaaatgttTAGCAAAACAACCAAATGTTTAGCAATTCATGGGTCAACCTGGGGAATATATTAGGGAAGAGATGGCACCTGAACTGAACTGCGTGAAAGACAAGGGGCAAGGATACACAGAATCCACTCAGT-------CTTTCAGTTCAACAGAAGAAAGTATCTGTCAAGTATCAAGCACTGTGaagatgaataaacaataaaaatgactcAGCCCTTCAGGAATGCCATTTA

a score=16715
s chr3           103804504 597 + 160039680 TTTAAGTATTTCTTTGGGGAGAAAAGAACAACACACTTCCATCTAATTAAAGAAACTCACCATACAATCTAGA----------------GGCTATCTATTT-------------------------CTCTATATCTTATCTATTAAGCCATGAAGTCATAG------------ACCAGCTCAGGCTCCTCTCCATCAGTTCCCACAAAGTGTGGCTCTCTGGACAGCACAGGCAGGCAG-----TTTACTGACCTCAGCTCCCTTCCTCTTCAGCTTT--TCTTTTGCTGATCCCTTTCCTTCACGTGT-TCTGTGTGTTCTCACGACACACAGAGC--TTCACATGCTCAATGTG--TATCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTGCT-GCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAGACTCTTC-AGTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGTATGCAGTCACTTGAT-TCAATAATATCTCCCTGCCTGAACATTCACACAGACGTG-CTGAAGGAAAAACTCCATGCTT-TCCAAAAGGCTTAGAGATTATACGTCAGGTATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAAATTAATGGAAGATG---GTTTTGGCTGAAAGG
s HiC_scaffold_1 215431867 662 - 233722169 tccaaatatttgtttctgaAGTAAAGG-CACCACACACCTgttaaattaaggaaaacatcctTACATCATAGGATGTTTTTTTAAGAAGGGCCACTTAGCTGCCAACTAGGTGCTGAATggcagagctatatccccagtttaT---GCTGTGAATTTATAGTGAATGGATTTCAACAACTCAATTTCCTTCCCATTGGTTCTCA-AAAGTGTGCTTCTCTGTGTGGGTGGGGCCAGCTGGTGCTTCCGTTGAACCCAGGTATCTTTCTCTttggctttcttctttttctgatcattttccttAACGTGTCTCGGGAAGTTATCTCAACTCTTTGAGTGTTTAATATGCTCAATATGCATATTAATTTTCTTGGCAAGCATCTTGCCCCTAACTTGCTTGTTTACAACAATGCCAGCAGCATGCTAGATAACACTGTAGACGCTTCCAGTTTTGCCGTGGTACCATTTGTGTGGCACTCCTTTTTGCACAGAAC-CAATCCCTTGATGTCTACGATATCACTCT--TTGTAGATTCGCATGTATGTGGCCAAAGGAACAGCCCCATTTTTGTCTAAAAGGCCTAAACAAAATGTATTGGGTTTCTGTCCCCTTTCTCTTTGTGTTTGTCATTTTGGAAAATTACTGGAAGATGACAGTTCTAGCCAAAAGG

a score=9522
s chr3           103804626 446 + 160039680 CAGCTCAGGCTCCTCTCCATCAGTTCCCACAAAGTGTGGCTCTCTGGACAGCACAGGCAGGCAGTTTACT--GACCTCAGCTCCCTTCCTCTTCAGCTTTTCTTTTGCTGATCCCTTTCCTTCACGTGTTCTGTGT-GTTCTCACGAC--ACACAGAGCTTCACATGCTCAATGTGTA--TCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTGCT-GCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAGACTCTTCA-GTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGT-----------------------------------------------------------------------------------------------------------------------------------------ATGCAGTCACTTGATTCAATAA----------TATCTCCCTGCCTGAACATTCACACAGACGTGCTGAAGGAAAAACTCCATGCTTTCCAAAAGGCTTAGAGATTATACGTCAGGTATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAA
s HiC_scaffold_1 181454026 586 - 233722169 CAACTCAGGCTCCCTCCTCTTGGCTCTCACGAAGTGTGCTTCTCTGGGCAGGGCGGGCTGGTGCTTTAGTTGAACCCAGGCTTCCTTCTTTTTCAG--------------ATCCTTTTCCTTGGCACGTTTCAGGCAGCTGTCGCGACTTGTCCAGTGTTTAATATGCCGAATACACACATCAGTCCTCTTGGCAAGTGTCTTACCCTTTACTTGCTTGTTTCCAGCTGTGCCAGCGGCATGCTGGGTAACACTGGACACTCTTCCTGTTTTGCCATGGTGACATTTGTGTGACATTCTTTTTTGCACAGTCCCTTGATGTCTACAAAATCACTCTTTttggtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtggtaccaggaatcgaactcacgacctcaagcttgccaggcaggcgcttgtgctgctgagctaaactgcTGTCACCCTGTTTGTAGAATTGCATGTCTGTGGCCAAGGGGACAACCCATGATTT--AAAAGGCCTAGAGAACACACGCCAGGTTCCCCTCCTCTTTGCCTTTGTGTTCATCATTTTGGCAA

a score=17317
s chr3           103804626 483 + 160039680 CAGCTCAGGCTCCTCTCCATCAGTTCCCACAAAGTGTGGCTCTCTGGACAGCACAGGCAGGCAGTTTA-CTGACCTCAGCTCCCTTCCTCTTCAGCTT--TTCTTTTGCTGATCCCTTTCCTTCACGTG-TTCTGTGTGTTCTCACGACACACAGAGCTTCACATGCTC--AATGTGTATCAGTTCTCCTAGCAGGAATCCTATCTGTACCTTGCTGCTTACAACAATGCCAACAGCATGCTGTGTGACACTAGAGACTCTTCA-GTTCTGCCACTGTAACGCTTACAGGCCACTCCTTTTTGAACAGTATGCAGTCACTTGAT-TCAATAATATCTCCCTGCC-TGAACATTCACACAGACGT---GCTGAAGGAAAAACTCCATGCTTTCCAAAAGGCTTAGAGATTATACGTCAGG-TATGTTTCCTCTTTCCCTTCATGCTTGTCATTTTTGCAAATTAATGGAAGATGGTTTTGGCTGAAAGGAAGCTGAG
s HiC_scaffold_1  59695657 490 - 233722169 CAACTCAGGCTCCTTCCCATTGGTCCTCACAAAGTGTGCTTCTCTGGGTGAAGCAGGCTAGCGCTTCAGTTGAATCCAGGTAcctttctctttggcttcctttttttcctgatCATTTTCCTTGACACATTTCAGGATGTTATCCCAACGCTGAGTGTTTAATATGCTCCACATGCACATTAATCCTCTGGGCAAGTGTCTTGCCTTTAACT---TGTTTACTGTAGTGCCAACACCATGCTAGGTGACACTGTAGGCTCTTCCTGTTTTGCCATGGTAACATTTGTGTGGCATTCCTTTTTGCACAGTATCCTTACCCTTGATGTCCACAATATCACCTTTTTGTGTAGATTAACATATATACATGGCCAAAGGTACAGCTTCATGCTTTCTAAAAAGCCTAGGGAACATATAACTGgattcctctcctctttccctttgtgtTTGTCATTTTGGCAAATTACTGGAAGACAG---TGGTTGCAGATAAGCTGAG

a score=17585
s chr3           103805405 723 + 160039680 ACAAAGAAAAAAATGCAGGCCTGAACTTTAAGCAATGGCTGTG-GTGACAGACATGGGAGTTGCTACTTAATAGTTGTTTTCAGA------CTTCACTGT-TTCACAACTAAATTGCTAACTCCTTACAAAAATGT---TTTGTTTTATATCCACTCCCTTTGACTATGATTGAAATTTCACTTTTGAGGCAAAATGTAGTTGTTTTTCTGCTTTCTGTACATCTTTTTCCTTCTCTGGGTCCTACCTTAAAACGACAAGA---AGCCCTCAAAGTCAGACACCATATTTTATTTAGATTTATATCCCCATTGCCTACTAGGTAAGTGCTACATTA-CAGGGCTAATTATATATTTGCAAAATTAATCAAGCCCTACTACAGGCCGTCTCCTAACCAGCTGTGCTGTTCTTGAGAAAATTCTGCATGTTAAACTTCAAGAATAGTCAGCCATAGTATTTCTTCATGAAGAGTTGAGTAATCCTGAGGGTAGGGAATATTTCTCAATCAGTTTGGTAGTTACCCTGGTAGGTG-----------------------------------------------------------------------------------------------------------------------TATAGTTTTTTCATTATTTTTATTTAAGGTCAAATTTGAAACTCCTTTCAGAGTTAGGACATATA-CTTTAAGATAGTCAT--TTTCCTCTTTTAAGGAC---CTTTAATTTTAGGAACAA-GCAAAGAAATTATTTAGAACAAAATCTGTTTTTTTTTTAATAAGAAAAGCTGATTTTCATAAACTATCTCTTAAAAAG-CAACTTCAAAAGA
s HiC_scaffold_1 114206208 826 - 233722169 acaaagaaataaatggagtTGTGCATCT--GGGTATGGTTATAAGTAACAAAGATAGGAGGTTTT-TTTAACATTTGTTCTCAAATGCTTTCTGAACTCTATCCTCAACTAGACTGTGAATT---TAAAAGAacatatatttgttttacatcttcttt-----------------attctgtctttGGGCACAAATTTACCTGAGCTTCTGCTATGtattcttgttttttgttgtctCTATACTA------AATTACTAGACTCAACCCTCAAAGTCAAAGatcatattttgttcatttttctatcCT-ACTGCCTATTGG--AAACTTTGTATTAGTAGGGacttacatacatttgcaaaattaaTCAAGCCCTACCATAACAC-CCTCCTAGCCAGCAATACTCCTCC-AAAAAAGTTCTgcatacaaaatttcaagaacGGTTAG---GGCTATTTTCCCATGAGCAGTTAAGCAATCCTGAGGGTAAGAAATATTTCTCAACCAATTTGATAATCATCCTGGAAAGTATATAATTTATTAAggtatgtttgcaatacataataattacatttatcttggggaaatggcacatacagatgtattttcatcttcttttttagtTCCTCTATCCCTTCCTGCCCttccattataatttttttagtgtttttgtttaaCCTC-ACTTTGAAACT-CTTTCAGAGCTAAGATATGCCTTTTTAAAGTATTCATAATGTTCCTTTCTGTGGACTTATTATAATTTTGAAAGCAACCCAAAAAAATCACCTAGAACTAAATCtgttacattttataaaacaaaaaatgattttcacaaactatctctcaaaacgacaactccaaaaaa

a score=145588
s chr3           103807324 6153 + 160039680 [encoded data, 6954 characters]
s HiC_scaffold_1 114208038 6056 - 233722169 [encoded data, 6954 characters]

a score=47501
s chr3           103814659 1604 + 160039680 TGGAATGTAAAGCCCTTTTCTTTTCCA-----------ATGTAAAAAGAAT---TTGATTGTGGCATAATC---TGTTTTTAAGAATTCCCTCCCTCTTTTGTTA------TGATTTGTTTCATGGCAGTTGTATGTAGA---------CTGTTCCATTTGGTATTAAAATAGTGCTTTTGTCTTGATTTTGG-ACAGAATGTCAAAACTGGACCAGTGGGGCCAGGCTGAAGTACTGAACTTTCTGCTC-CGCTACCAACCCCGCAGTGAGGAGGAACTGTTTGATATTCTCAATTTGTTGGACAGCTATCTCAAGAGCAGCAGTACTGGCGTGGTGATGGGAGCCACCAAACTCTTTCTGATTTTGGCAAAAAAGTTCCCCCACGTGCAGACTGATGTGCTTGTGCGAGTCAAGGGGCCCTTGCTGGCCGCCTGCTCTTCAGAGAGCCGTGAGCTCTGTTTTGCTGCTCTCTGCCATGTCCGCCAGGTCTTGCACAGTTTGCCAGGTCACTTTAGCAGTCACTACAAAAAGTTTTTTTGCTCTTACTCGGAACCCCACTACATCAAGCTCCAGAAGGTGGAGGTGCTGTGCGAGCTGGTGAATGACGAGAACGTGCAGCAGGTGCTGGAAGAGCTGCGTGGCTACTGCACTGACGTGGCTGCTGACTTTGCACAGGCTGCCATCTTCGCCATAGGTAAGCGCCTGATGCTTCTGTGTCTCAGGAGGTCAGGTCAGCCAGCTCCAGCGCTGTAGCCAGGGAATCCATAGAAGACAGTAGCAAGTGACTCTTGCTTCAGAGACAAAGTATCATGCTTTGGGCTGATTCATGCCTTCCTTGAGTCAGTGATTGCATGCATAGGAAAAGAGTGGTTTTGTTTTAATCGAGGCAGATGTTTCTCAAGGTAGACAGTACAGATAATTTGAACATGGAACAACAATACTTAAACTTTTTAAACACTTTACTGTGTTTATGTTACCTTCTATCCAGACCGTTTTCACATAT----ATCTTATCTTATGGTCTTGTAAGGCAGTAATAGTGGGTATTTTAAAGATGAAGAAACTTAGCTACCAAAAGATTACTAAGTGGTCAAAAGATCACAGTTTCCAAACTGAGTGAAACTCATCTGTCTTTtttttttttttttttaaga---tttatttatttattatatg-------taagtacactgt--------agctgtcttca-------gacactccagaagagggcgtcaga----tcttgttacagatggatgtgagccaccatgtgg-ttgctggga----------------tttgaactccgaacctttggaagagcagttgggtgct---cttacccactgagtcatctcaccagcctcGA-----------AACTCATCAGTC-TTAACTAAAAGTCCTTTGCTTCTACTACAGGTTTTGCATAGTGCTAAGTGTAGACCAACATAGAGCAATCCCTTAATTTTAGAGACTTTCTGACTGCTCAGTTTGAAACTTAAAAGGCTAGAAATATTCAAAATGTGAAAGCTGCCAGCAAACT---GAGACTGAGAGAG---------------CTAAGACAAAGTG--------ATGGCGTGAGGAGCCCTCCCTCTGAAGACAGGAGAATTCTT--AAACTTAAAGATTGCCATCAGGTATCTGCAGCAGGAGAGTCCTGTTCTGGTGTGTTGCCTCCAGAAGGGTGTTTCAG
s HiC_scaffold_1 114214319 1606 - 233722169 TGGAACTTAAAGACTATCTTTTGTTGACTTTAAATAGTATGTAAAGAGAATGATTTGGGTATGGTGTAgccctattttttaaagaattctcaCCCTGATATGATGAACAGCTGCCCTGGCTCATGGGAAA-GTACATGGGAGGGTGGTTCTAATTTTGTTGGTA--AAAATagtgcttttatttcttccctggCACAGAATGTCGAACCTGGACCAATGGG--CCAGCCGAAGTATTGACCTTTCTCCTCGCGCTACCAGCCTCGCAGTGAGGAGGAACTGTTTGACATTCTCAATCTGTTGGATAGCTTTCTCAAGAGTAGCAGCCCAGGTGTAGTCATAGGAGCCACCaaactttttctgattttggccAAAAAGTTCCCCCATGTACAAACTGATGTACTTGTAAGAGTCAAGGGACCTTTGCTAGCTGCCTGTTCTTCTGAGAGCAGGGAGCTCTGTTTTGTTGCCCTCTGTCATGTGCGCCAGATCTTGCATAGTTTGCCTGGTCACTTTAGCAGCCACTACAAAAAGTTTTTTTGCTCCTACTGGGAGCCCCACTATATCAAGCTACAGAAGGTGGAGGTGCTGTGTGAACTGGTGAATGATGAGAACGTGCAGCAGGTACTTGAGGAGCTTCGAGGATACTGCACTGATGTATCTGTTGACTTTGCACAGGCTTCCATCTTTGCCATTGGTAGGTAtctgctgcttttttttccttagttCCTAGACCAGCCAGCTGGAAAGCTATAATAAGAGGAACTATAGAGGGTAAAAGAGAAGGAATCTTGTTTCAGAGATAAAATACCAT--------TTAACAAAGAAC-----TGCATCAATGATTACA-Gcaaggaggaaagatttttttgttt------------atcttttccaAGATAGAAAATACAGGTAACTC-------AAACTATAGTACttaaaattt------------atgtcttt-tgttttcttctatcccaaatgctttcttttttttccacctTACC--ATAGTCATGTAAGGCAGTCAAG-----------AAAAGTGAACAGAT--------------GTTATTAA-------------------CTTCattttgg---------atttgtttgtttgtttgtttgttttgagaaagtttccctgtatagttcaagctggccttgaactcattatgtagcccaggctggcctcaaagtcttgacactcctaccttagcctcctgaatactatgattacagacatatgccag--gACACCTGGCTTACTGTGAAGgcacaaaaaaaattattaaatttccaa-------AAGATCATATAGTTTCTGAACTGGACTTAGAAACTAGCTGTCCTGCCTCAAAATGCTGTGTCAATTCACCAGCCATTAATTGA---------GCTTCTGTTACAATGTTTCTACAGCATTGATTATAGACCAATACAAAAGAATTCCTAGATTTCAGAGGCTATTATGCTACGCAGTCTGGAACTTAAAAGGCTGGCGTGACTCAAAG-GTGAAAGAAGCTAGGGAGTTGTGGGGCTTGAAGGAGGAAGAACCCTTGTATTTGAAATAAAGTATGGTTATTAGGGGTAGAGAAGAGAGAcgaaagaggagagaagaaatcCTTGTGGTTGAGAGACTGCTGTCAAGTTTCCCCAGAAGGATATCCCTGTACGGGCGTGACACAGCAGAAAAGGTGCCTCAG

a score=82102
s chr3           103817691 4148 + 160039680 [encoded data, 4373 characters]
s HiC_scaffold_1 114216099 3465 - 233722169 [encoded data, 4373 characters]

a score=7178
s chr3           103823345 953 + 160039680 AACAAAGCTGCTAG-GCATACTTCTAGCAGTTTTACTGCCGTGGTTTCTTATTGCTTGTGCTCAGTTCTTATTTTATTTATGCTTGGCTGTGTTTTATGCAGTGA--------TACCAC---------TAATGCTATAATGCAACAGAA-AGACAGCAAGCCAGGAGACCAAACGATCCAGAAAGGGGAAAATGAA-ACATCAGTTAATCCCACGTGGCTC-GGGATGGAGACATAGACAGATGTTCAGAGCATA---AGGCTGACACA----TTAGCTTCAGAATTGGCTTTATAAGTGATTTGTCAGGCAGAATGAAGGGAAGCATTGCTTTGTCATCACAGTTGTTTGTAATTTCTTACTACATTAGGGGTGTGCgtgtatgtgtatgtacatgcacatggaccatggcatggtactgtgtggaggtcagaggacaattttctgatgggttctgtgtgtcttgagcattggtagtaattgcctttaaccactcagccatc----tttccagccTTGCCATCAGAAAGGGCAGTGAAGGTATGAAGGTCTTCT------TTTCCTTATGTCTCTATAATATATTCA----CCATAATATTTCTTAGTAAATATTATTGAATGAATAGCTAT--AAGTAACTAGACTGAAT----TAGAATTAGTAGTAATTGGTACTAGTAATT------AATAA------TTA-AAAAGTAATTAGAAGA----ATTAGGTCTTCT--TAAAAATATTTATTTTGTGCAtatatgtatgggtgtgtatgagtgccagggtatgtgtttataaaatttaagacaacttatggaagtcaat-tcttgccttccactctgtgggtaacaagaattgaacatcaggcttggcagcaaacagctttactcactggaccatcttgctggtcccTAGACTAGTCATATTCTGTGTTTGATGTTTGAAGTATGTTTTATTATATTCTATTAACTATTCAGAAAGTAATGGAATTCCACCTAGGCCAGGAATTTCTT
s HiC_scaffold_1 114220241 927 - 233722169 AACAAAGCTACTAGTGCATATACCTTGTActaat-------tgttttcttgttatttaccctcactttttattttattcatgccCAACCACATTTTATTCATTGAGGGCCACTTAcaacaacaaataataataaaataatgctataataTAGATA----------AGATCTAActatccagaaagagaaaagtaaagatAACAGCTATGACCAATTGGGTCAGGGAtaggaaaatacacaaatgttCAGGCTATATATAGGTCAACACACAGTTAAGGTTCATTGTTGGCTCTATAAGTGACTTGGGAGTCAGAATGATGGAAATAGTTGTGTAATTGTCATTGGCGAGGAAGAAACACTCCAATATTAAGTTTCTTCAAAAAGGA--ACTTACAAGTA----------------GTTTCATGTAGGTGTCACAAAATGATATTTAGTAGGATTCTAAACAAATT------------CAATAGAGTTT---CACACAACTATTATCATGTTCATCAATGAAAGCAGAAAGCACAATTAAA-CATGGATGTTAATTAAGGCATTTCTTTAAGGGTTTA--ATGTAATCTAAATTTATTGTCTTCATTATCCAGCTAAGTTGAA-GAACTTCTATGTAGGTTTGTAGGCTGCATGTCTTTCAGTTAGT-----TTTTTACCGATCATTTCCCTCAATGAGGCTCCTCATAGAAGTAGATAACAGACAGTATTGAATTTTCTAGTAAGGACCTAGGTTTTGTGGGT-TATTAAAGGGTCTCTCCCACTGGAGAATCATCCCTCCTCCCCACTGGATA-ATCTCAGTGTAGTAAATACCCTACTTTCCTTTATCT----------------CCACAGTGCCTGCCA-----CAGTactactcagtaaata--tttattgaaatcta---TAATTAGATTCTGAGAATGATGTTTAAA------TGTATTATATTGTATCAACTGTACAGAAAATAATAGAATTCCATCTAGACCAGG-ATTTCTT

a score=6748
s chr3           103826309 248 + 160039680 GAAGGGATGGTTTGCATTAAAGGGCCAATGG--AGTAAATAAGGCATGTGGAATGCATATTCCACAATATCCCCGAGGCCCTATACTCTCTGTATTGTTTTACAATATCACTTATACAAGATAATCCAAAGAAGCTGAGATTATATTCCAAAGATAGCATTTACCCATAAGTATATCAGCAGTGAAGTGGAAAGGTACTTGGTTGGTTTACTATTGTGAGAAAAGCTTGTGTCTGAGGTAAGACAGACTT
s HiC_scaffold_1 114226788 227 - 233722169 GGAAGGATG--CTGCATGCAAGGCCTAGAGAGAAGTAGAAAAAGGATGGAAAG-----ATTACACATGA-----GAGCCCCTATTCTGTTTCTGTAGGTTTATAGCCTTGATTATACAAGATAATGCAAAGGAATGAAGATTAGTTTCCAAAAACAGCTTTAACCCATAAGCATTGCTGTAATGAAATGGTGAGGGA----AATAGTTTATTATTGTGGGGAA-------GCTTGAGCTAAGAcagacct

a score=12612
s chr3           103832490 478 + 160039680 ACCTCCCTTGAAATTACATCAGTTACAGAACCTAGCAGGAAGTATTTCTTAAATTACTCAAGAGAACCTTCTTCAATTCATTACAATTGCTCAACTTACCTCTTCAGTTTATTTCAGCTATAGATAGTTTATCTG----TAAGAGCTATCCATTACTCTTACATACTGGCAAGGGTGTGGTTCTGAGATAAGGAACTGCAAAGTCTT-------------------------TGTCATCCCCTTTGAGCAGTTTCATTT----------GGAAAGTTAAT--GGGAACTATTTTAGGAC---ATATCCAATTAGGAAG--CAATAAGAGGTAGGCAGCCA-CAACTGGTTTGCCAGGTTCTCTAACTTCCTGCTAAGCT-------------TTGTGGAG-----AATGTC------------TAAAATGAAAAACCCTCGGACTTTTGAGGAGCAAACAGAATGCATCGTGAATTCTCTACTCAAAGACTTCAGGACCCCACTATCCCACGCTGCTAACCGGAACCTATCGGGTGCAGATGAACCATGCTCAGG
s HiC_scaffold_1 114233816 522 - 233722169 accttcttTTAAATCACACCATACACAGAACCTAACAGGAAGTATTTCTCAA-------------------TCAAATTTATCCAGA-----------AACTCTTAACTTGATTTCAGTTCTAAATTggacatgtaaaaataaaagttattcatTAGCAATATGTACTGGCTATGGTGTGTTTCTGAGATAAGGAATTG-AAAGTCTTCAACAAGTCTCCCTAGTTCCAAGTGTGTAAGCTCTTGAGAAAAGTCCCACATTTCTGAGCAAAGAAAGCTGGTTAGAAAAAAATCCCAGGACTACATGTCCAATTAGGAAAGTCTGTAAGAGGTGGGC--CCATCTGTTAGTTTACCAGTGTTTCTAACTTCCTGGTTAGCTGAAACTACTTGTTTTGTGGAAGGACAAATCTCAGCATCAGGCCTTAAAATGAGGAGTTCCCAAACTTTTTAGGAGCAAACAGCATGCATCATCAGCACCTTACTGACAGACTTCTTGAGTCCAACATTACAAGTTGCTACTCAGAGGCCATGCAATATAGATGAACCAGACTCAGG

a score=25574
s chr3           103835594  987 + 160039680 TAACCTTCTGCTCTGACAGGACTGGGCCCCTTTATGCCTCAAAGA-TCCACCTTGACCCCATCTAACAGCTGTTGTACCAGTTTATTTGAGAGGGGAAAAAGAAGAAAAGACGTTTTATTGTTATTTAACATAAGACTTTGTTATGCATTTCCTAATCATG-GAGCAATCCCTTCATAAGCCTGACTTGCTCGCTGCCATGTGCTTAATAGCTTTCTTTCAAAA-------TAAGTAGTTCCCCCTAGCCAATAATACCTGAAAGTATGAACTCTGTAGGTGATTTAatgtttttctcatatc----aaaataacagaatattaagatgagatttgtccatctgccctctaatatcaccccatgctgccagtggtccatttgccacctct-gagCA-------CGTCTGAGACTT--------GCAGCCTCTGGTACTGTTTGAGT----CATAACTAACAGAGCCTGTCTCCCTCCTCAGGCAGGAAGTACTGTACTCAACGACACAGTACAGTCTCTCAGCAGAACCTGGTGCACTCAGGATCCTACTTTAGTTTTTGAACGAGCCTTTTTGGCAGTATCAGTAAAACTTCTTGAATATGTGGTCCGTAAGGCTCCAAACGTGGCAAGACAGGTGGCTAACTACGTGACGGGCATGATCAACGGGAACACAGCCATCCGCGAGTTTATCCAGGGCCAGGGAGGATGGGTAAGCATCTGTTAAGTCCCATGCTTTGCTAGGCATTTGTGCTCTTCTGGCTTTAATAAGTAGGACTCTTAATTATGAACGTTTT----AGTAAA------------------------------------------TTGCTATGGAAAAAGGAAAT----AGAAGCTCAGCCTGTGAGGATTAGAC----------TGCTGCCTGAAGTGTTGACTGCTGGCCATAAAATAATCTCTACCATATCTACATAATCAGCTAT-AAGTGTGTT-GTGGTACAGTTCTAATCTCAGCCTGACTTTA-TCTGCTTCCTGGTGAATTTCTGAATCTTTATTTCTTGACATCTTTAATATGTATT-GAGGACATTTAGAGT
s HiC_scaffold_1 114234712 1043 - 233722169 TGACACCCCACTCTGACCTTTCTTTGCCCCCT-ATACCCCAAAAAGTCTTGGTTGACCTCACCTAATAACTTTTGGACCAAGTTGTTTGCAAAcgaaaagaggaaaaaca------tagagctaatttttaaaagagtttccTAGACATTTCCTAGTTGTACAAATAACACTTTTATAATTTGACCCTTTATCTTTTCATATACTTAGTATTTTTCTCTCAgatcattttttatattattcatcatAAGCAATAATATCTGAAATCATAGATTTGATGAGT-------TACTTTTCTAATATTCGttaaaagaatataatattaaagtGAGAAAAGTTCATCCATC------TATTGCCTGATAATACCACAGGTCCATTTGCTACTCCTTGGGCAACACTTGTGTTTGTGGATTCCTGAGCTGCAGCCTCCTACACTTTTTGAATGGAACTTTACTGATGTATCCTTTCT---TTCTCAGGCAGGAGCTAC---ATTCCAGCATGCAGTGCAGTCTCTCAGTGAGGCCTGGTGTCCTCAGGATTCCAGCCTCCCTTATGAGACAGCTTTTCTGGCACTGTCAGTGAAACTTCTTAAGTGTGTGACCCATGTAGCTCCTGAAGTAGCGAGACAGGTGGCTGTCCCCATGGTGGGTATGATCAATGCCAA-AGAGCCATCCGTGACTTCACCCAGAGCCAGGGAGGATGGGTATG--TGTGTTGGGTCCCTGGCTTTGCCAGACATCTGGACTCT--TGATATTAATACCAGAAACTC-TAATTAGGACCCTTTTTGGAAGTAGAAGCCAAGCAGGAAAACAGGCATCCCTACTATGCAGGACTTTGTTGCCATGGAAGAGAGGAATAGACAGAAGCTTGCCCTGTGGGGGCTGGGCTCCAAAGTCATGCTACCTAAAAT----ACTATTGTCCCTAAAGGTGTATTTCCTACACCTAAAT----ATCTATAAAGTGTATTGGCAGTAGGGCTCTAGTCTCAGCCTTACTATACTTTGCTCCTTGGTAAATTGATGGGTCTTCATTCCTTAAAATCCTTAG-GTGTGTGAGAGGAAGTTCAGAAT

a score=4503
s chr3           103846955 107 + 160039680 AAAAGTCATCCTGACTGCCTGATTT--TAACAGTTTGGTTTCGCTCTAGGTTAATGATGTGATGTTGGACAAATGGCCTAATTCCTCAGTGCTCT-GTCCTCAGGGCTGT
s HiC_scaffold_1 114238528 110 - 233722169 AGAATACATTCAGATTCCCTGATTTCATAACAATTTAGTTTCACCATAAACTAATTATGTGACATTGGGAAAGTGACCTAATTCCTTTGTGCCTTAGTTTTCACAACTGT

a score=80928
s chr3           103858733 4328 + 160039680 [encoded data, 5087 characters]
s HiC_scaffold_1 114243103 4525 - 233722169 [encoded data, 5087 characters]

a score=14295
s chr3           103866309 363 + 160039680 gctCTGTATTGGTTTTATTAAAAATTCCAAACAATATGCA----AGACCTACTATACTCTGCACCAACAGGTCTGACTGACCCAAAAGGAGATGATGGAAACCATGGCCTGGGAGGTACAGACAATTACTTGAAAGGGATGGTTAATACAGTGATTTCAGACAGTA---------------AGAAGGCTTGCCA----ATATATCTTTTTCATGATGTTCTTGCTAGAAAGGTGAAATTGC--AGGAGCCTGAGTCT-------GAACACTCTTGGAGCTTTGTGGTTATGGTAGCAGTTC-AGAAAGGCTCCTGGGGACAAGACAGGTGCTACAAGCCAAGCAAGCTTATGGATCTGAACCACCAGTCCAAGAATCTGGTCAAAATTCAGATTTT
s HiC_scaffold_1 166628668 391 - 233722169 GTTCTGTGTTGGCTTTACTGAAAAGTGCAACAATCAGACACAGCAGACCTCTAATGCTCAGCACCAACAAGTCCGCCAAATCTGAAAAAGGATAATGGAAATCATAATCGGAGAGATGCGGACAA---ATTGAAGGAAGTGATCAATGAACTGATTtcagacagcactgggaaagacacagaaaaggctTGCCAGTCTATTTATCCCCTTCATGATGTCTtcgtcagaaaaataaaaatgtgaagaagCCCAAGTTTAAATTGGGAAAACTCATGGAGCTTCATGGTGCAGGTGGTAGCTCTGGAAAAGCTGCTGGGGCTGAGACTGGAGCT-TAAGTTGAGCGAGCTGATG-ATGTGAACCACCAGTCCAAGAGTCTGTTCAAAATCCAAATTTT

a score=19734
s chr3           103868162 2257 + 160039680 AAGAGAAGAAGACTTAAAAGGAGGATTTAAAGGTGGTCTGACCACAGGTAGACGTCAGGGGAAAAAAAATTAAAGTGTTTCGCACTTCATAAGTTAACAGTTCTGTAGGTA-TTTCCTGTGTCATATTGAGGCGGGTAGCCTCCTCTGTCATC-AGTCAGATGACTCC-----------AGGAGCAGCAAAAGAAAAA---------GCTATGCTGAAGGTCACAGTGAAGACCAAACAAGCCTCCATTACCCACATAC--ATAATCTTTATCTGTGCCATCTTGCCCAAAGAGTGCCTTTCAAAAAACAAAACCAATAAATCCCAAGGCGT-TGCCTCCAACATTCTCCTCCAGAAGCATCCCACAAGCAGAGAAAAGTGCAAGGAAGCAAATAAAGTTAGCATAACCGAGAGGAGGAC------------TCTGGAAACTTCTAGAAAGAATTGTTCAGAGAC------ACTTTTCAGCAGCCATAAAACTTACAGCAACATAAAAGCCAATTATTCTGAAGGAGGATAAGAGTGGAGAGAGATGAGACATGGGGGAAACTCCAGGGGAAGCGCTTCTGAAAGTTTTAAAATTATATTTATTGGGGCAGGAACTgacaggcatgtggaggtgagaagaaaactttttggggtcacttccccccttcagtcacatagatcccacagactaagttcagctaccagccttggccagaagtagctttatccactaatccatcttactagcccACCACAAGTATTTCACGGTGTTCCAGGTGTCTGTGTCATGTTCTTAGTTAAATTCCCAAGCTAGTCCATTAACATAGTCATGACCTTAGTGTAAAAACACACC------------GTTTAGCA----TCTCCTGCCAAGTCCAACTCTGAAA--TCATAGGAATTCAAACCGTTAT-----GCACAACCAGGATTCAAGAACTTCCCATGTTCCTGGTCTGGATCCAG----CAGGTGTCTTATCAAACCTAGAAAT---AAAAGTCTAGTTACTGGAGGGATGCATCCTGGTACTGGTGGAGCTGCAAAGAACCAAGCACAGACTGGCTGCTCTATTTCAAATGTAAACCCTTGACTAGAGAGAGAGTTTATATTCTGATATACTGGGTGGCTATAGTAACTTAATG------TTACTTTATTTGGAAAATATTAGTTTAATTAAATTCTATATACTTAATAGTGGTGTTCTGAAATTTTAGCT------ATGCTCTCCATTTTCTCCTCATCTCATTGAAGACTGACATGG----TCACCAAATT-CCCTGAGGCATTCTTTA--TTaaaaaaaaaaaaaaaaaaaa------aaaGGGAGGGAGTCctctctatgtagcc------------ctggctagtccagaactgagcatgtgcaccaagctggcctccaactcagggatacccacctgttctgcctccagagttcttcaattaaacat-------gtgag----tccctacacctgacCCTCTGAGCCAATTTTGAAGCCTCATGATGAATTTGGATAATTTGTTGGATCAAGACTTTCTAT-----TAGCAGCACATCTTTTCTGCCTTTCTCCTCTTTGTGCCATTGAttttgttgcttttgtggagtctctctgtgtagcagtggctgaccagaaactttctatg--tagaccagtctggccttg-aactcacagagatctcctgcttctgcct---cctgaggactgggat----------------ACTCCTTTGAGTTCTCCTTTCCTCATTCAT--------------------TTTAAAACCACTTAATAAG-----------------TCTCCACAAGCAAACTCCTATACAAAACTGCATGTCCTCATTACTGATGTATAA----GTATTGTATGGCGTATACAAGCTGTTAAGTAACAGTAATGACAGCCCTCTGTAGTTTTG--GTTGTTATTGCTC-TCACTTGAGATAAGTTCCTTCTT---------------ATTTATTCACTGTG---------TGGGTCAAAGTAGATCATACCCATGGCTGGGAAATGTGAAAGCAGAGCCAAGGGTGCATAACACTTGTGAATAGCCAGAGGAACACCCTAGTTCCAAAGATGTCATATTACACA----TGATAACACC----------------------------------------AGTTTGTGAGAACTTGAAAGAATCTAGAAGCCATCTTTAGAGACTTAATGGGAGAGAACACTGGGAAATTCGGGACAGTGAACTT-GATTCTAGCTCAGGAGACCCTTACCTGCAGAGTTTGGGACTTATTTTCCAAGTGGTAAAAATGATTTATTGAAGTCACTTTAAGCAGCATTGGAAAGTTTAACAAAGCCAACATTGAATTAAT-TGACATAATCATACCCAATAAATTTGAATGAAGGAAGAATGGTGTGAAGATG-----AGGAGAAATTATAGGAGTTAAAGCTTG---AAGGGAAAGAGTCTAAACTAAG
s HiC_scaffold_1 114254243 2180 - 233722169 aaaaaaaaaaaa---aaaaggaggacttCACAGTGATCTGACCCCCTGAAGACATCTTGGAGAAGGAGGATTAAATCTTCCATACTTTCTAAGTAAACTGTTCTGTAGGTATTTTCCTGTGTGATATTTTGCTGAGTGTTATCTTTTGTCATCTAGCCAGGTGACCCTTTGAAGAACAAAggactaggaaaagaaaaaagccattcTGCTCCATTGTTGATCACATTGAAAGCTAAACACACAGAGATTACACACATATGAATAACCTTTATCAGT---ATTTTTATCAAAA-------TCATATAAACATACCTTATAGA----AAAGCTTCTACCTATAGCATTCTATCTAGAAACCATTCTacaagcaaagcaaa----aacaaaacaaataaaa--accataacAAAGGAGAATGCACTGGAGTCATTTCTGGAGATCTCTGAAAAGAACCATTCTGGCACTTGAGATCTTTTCAGCAGGCCCG--------AGCACTGTGAAATC--ATTTTTCTGAAGGTGCCTAAGAGCAGAAGGAGTTGAAAAATAGGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAATACTTTATAGTCTTCTATATGCTTGTGCTATTTCCTTAATTCATTTCCCAAAGTAGTCCACTAGTATATCCATG---TTGGTATAAAAATATGCTGTACAAACATCAGTTTGGCATCTTTCTCCTTCCAAATTCaattatgaaaattcacaagaatTCAaaccaagattaaaaaaaaaactatgacttAAGAATTGACTGTGTACCTGCTTTGAAT--AGGTTTCCTGTGTCTGACCAAActctaaaatgtaaaaaaaaaaatcattagaacAATATACAC----------------ACAAATAAGCAAGC----ACTGGCTGTTC-ATTACATGTG-GAATCCTTTACTGGAAACAGG--TTACATTCTTATACGCTGgtttgttaaaataatttaatgaccTACTTATTGTATTTATAAGCTATCAATTTACTTAGACTCTGGATAGTTGGTAAT-GTGTTATGAACTCTCAGCTCAAAACaagttat-aatttctttttcttctcctttgggAGTCTCTTGGATATATATCAAGTTATCTTGAGCCAGTTTTGAAGTTGGCAAGTTAatgaatttgaattattttatggatCAAATTTTTATCTCTACatcctcttttttctgtttttcttttcttggtgtcatcatat-------------ttataatttaggGTTCCTTTCCACACCCTTTGTTAAAATCACTTAATAAAAGTTTCCTTGGGTAAAGTGTTACCTATAGATACACAACATAGTC-ATGTGAAAACACTGTAGGAAATATAAGCAACTAACTGGA--AAGACTTTTCAGAGTGATGAAAGAAAgactataaagtaaaaatagcctttattccaagga------------tgtaGAGAAAGTCCATG-ACCACGggcagcctgg---ctttctctggctGGAAATGTGGGGCATggttatatatataaaacctctgACTGGGGGTGgcgcttagggcgggcattgatgatgcacgaggagctgattggagt-----tttcttcacgcacaaacaggaaggggagttgcaattaaggctgaggaagaaggaggaagtggtaggcttcctgctttggccttccgccatgttagac-------caTCACCATAGCTGTACAgtaacttattctagggca---agaaACT-TTCACTAACAACAGTAAAAATcctctttaattttgttgttgttgttgctagtCACATgagaaaaattctttattttcctatttctcttaATTAATTCACCCTGGGGGGGGGCTGGGAAGGGAGAGACCATAATAATAGCTGAGAATTATAAAAGCTGTACAAAGGATGTAT-----TTATg------cgaaaaaa------agttttaaagaagtCATGTTTCATATATTTGTCAGTGCTATGAatttgtgcaatttttttttttttttttggtctttggaATTTGTGCAATCATGAAGGAACCTAGAAGTCATTTTTAGAAGCTTTTTAACTGGGGACAGTGAAAAATATGGGAAAGTTACCTTAGGATCCAACTAAGGAGCACCTTACCTG----------------GCTCCGTAGTGGCAAAATAGATTCACTGAAGTTGTTTTGAGCA----CAAAAGACACGAGAAAAGCA----TAAATTGATGTGGCATAATTACACTCAGTGAATTCAAgtggagaaaaaaatgtgtggAGATGAGTTAAGGAGCAATGATGGTAGTTCAAGAATGCCCAAAGGAAAGGGCCTAAATTCAG

a score=39157
s chr3           103873619 1794 + 160039680 AATTCTTCTTGAAATTGTATTACAGAAGCTGAAAAGGCAATCCACCAAGTACAAGGCCGACAAAATCTATCCTACAACTGTGGCTCAGAGGCCCAAGAATATCAAGAAAAACAGATACAAGGATATTTTGCCCTGTAAGTTCAGTTTCTTCCTGTAAACTTGTCTTTCCTTCCAATTTTAACTCTCTGCCTTCAGTTTTTAACCCAGCGCTTGT--TCTTAATCTTAGAATGCTTCACTGGCAAATTAATTATATTATTTATGACTGTAAAAGAACGTTCATTCATTCGATTAC-----TTGTTCACG----TAG------ACTTAGCCCTCTATGTAAGATTTTTCAGTTACACTGTCT------------------------------------------------------CTTTCTCTCGTGTTCCAGATGATCACAGCCTGGTAGAGCTGTCTCTGTTAACTTCCGATGAGGATTCCAGTTATATCAATGCCAGCTTTATTAAGGTAGATTGAG--GAAATAAAAGCATCCCATATTTTT----------------------------------------------------------------------CTGAG---------------------------CACC-------------------------------------------------TGAAAT-------------------------------------AGGGGATGGGGAGAAGACTAGG-----GGAAGAGGGTGCTGTCTGCACTCACCTCAGGTGAATTCTGTTCTCCTTTAGGGTGTCTATGGACCCAAGGCTTATATTGCTACCCAGGGTCCTTTATCTACAACTCTCCTGGACTTCTGGAGGATGATTTGGGAGTACCGCATCTTGGTGAGTGCATAATTGCTTCAGGTACTTCAGTAGAGAAGGCGGGATGCCAGGGAGAAACTGAGCAGGCTTCCCAGCTGTTA------------------AAAGCCGCTC--TTTTCTTTGGGGCTTGA----TGAAATTTCAGAGAGCAGGTATCTTTTATCAGTTTTACAATG-AGCTCTTGTTCACATGAACGCAAGCTGGCAGCTCGG-------TTGCAAGAATTGAGCT-----------GATAGAG-AAAGGGAAGCGGAAACA-AAAGGAGGAAGAGTAAGAGCGGTTCATAGTCCTTGGGGTTTCTTTATGGGTTAAAAGGCAAAGCCAACAG---AGAAACACTGCTTACTACTTTCTGGCTCTGGGACTCATGCAGGACTGTCCTCTCTAGCTTTGAACACGTTTACATTTT-----TGTTTCCTGCCTCTAGGTCATTGTCATGGCATGTATGGAGTTTGAAATGGGAAAGGTGAGTTGCTGTCTAGTACTGGTCGACCTAAAGATAAAG----------------------ACAGAACTTTGCTTATGTGTATCTG----AGAGAAACCATTCC------------------------ATACCACACGATCCACAAG------------------CGGTTTCCCCT-----------------------------CTGAGAAT---------CCCTTGTA--CCCATT------------------------TCCCCTCATATCT--------CCTGTGCTCTACAGT------------------------------------------------------TAAAGAAAGGAAG-GGAGAC-AAGAATACCGTT--------------------CCCTTTCCAATACTCAGATG-CTTTAAATGCCCCCCAGAGACTCT--CCTTGGGCTGCGCT---------------TCCACACGCAGTCATC-AAGTCCT---GCCATGGATTGCATGGTAGAAGGAGTCGATACTTTTA-----TTTTAATCCATTTAAAACTAAAAATGAACCTtcacttcagctattgaaa-------attttattttg--------gggcatatgaaagtttttcaaatataaacatggttt-actataaa-------aaaacatttccagtgaaaatttagtattctacttaaggtgtgtgctatgtataaaatatacataggattttaatttttatcaaaacaacagggcaagcaaatatgcactattattgtaccctggattacatgttaaatattttggtattttgggctaaa-----------------------------ttcatttaaaaatgt-gctgctagaaaatttAAACCTAAACATGTGACT--------------GCATTGCTGT------CTACTGCTGCTATTCTGAGTTGGGAATTCTAATCACAATT--GGGAATCTGACACTTAACCTG----GTGCAGATGTTTTAGTCAACA
s HiC_scaffold_1 114258270 2383 - 233722169 aatttttcttgaaattttattgcAGAAGCTGAAAAAGCAGTCCACCAAGTTCAAAGCAGACAAAACCTACCCTACAGCTGTGGCTCAGAAGCccatgaatataaaaaaaaacagatataagGACATTTTGCCGTGTAAGTTCCATTTCTCCCTGTAAGTACATCTCTCCTCTCAATGtcaagcatttttgttt--ttttttacctgCTGCTTGTGTTCATAATCTTAGAACA------TGGCAT----------TTATTCATGACTGTAGAAAA--GTCCAA-CATGTAACTATACCCAGTATTCACAGTGTTAGGCTATAACTTAGCCCGCT--GTCAGCCTTCTTAGTTAcatggtctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttttttattatagatGATCATAGCCGGGTAGAGCTGTCCCTGATAACTTCTGATGAGGATTCTAGCTACATCAATGCCAACTTCATTAAGGTatgctgaaaagaaataaaagtattccTAATTCTCTAGAAACTTTTGAAAAAGGGaatgaggctgggtgtggtggcgcatgcctgcaatcccacctcttgggtggctgagacaggagtatcactgtgagttccaggtcaccctggtctacatagtaagttttgagttcaaggatagcctgagctacatagtgagatcctttctcaaaaaataaagaacaagctAAACAAATAAAGGGAATGGGGAGAGGGTTAGGTGAGAAGAAGATTGTCTTTTCTGCAGTCACTTGATATAACTTCTTTTCCTCTGCAGGGAGTGTATGCACCCAAGGCTTATATTGCCACACAGGGACCTTTGCCTACAACTCTTCTGGACTTTTGGAGAATGATTTGGGAATACAGTGTTCTGGTAAACACAGACTTGCTTCTGTTACTTTATTCTGTA------GTTCTTAGGGTAAAAGTGGGTAGAGTGTCTAGACATGATGGATTTTCTTGTCTaccaaatctgttttgttttttttttaaattaatcattgGAATTTCAGGGTTCaggcattttttattaaaatgacaatGTCATTTTTGTTCAAGGAAATGAAAGTTCACACCTTGACAGGCCCTTTTAGTAACATGGCTTTACCGATTTGAATAGAGAAAAGGGAAGTGGggacagaaaaaaggaagaatata----------aGTTATCAGGATGTCTTTGTTGGTTAAGAAGCAAACCAAGCAATGCAGAAAAACGATGTGC-ACTTTCTGAGCCTGGAGCCCatgtattatctttttttctagctttaaagatgttttaaatttctatctatTTCATCCCCCCAGATCATTGTTATGGCATGTATGGAGTTTGAAATGGGAAAGGTGAGTCACTTTCTAGTGTCTGTTGAtctaaaagtaaagaagaaaatggaaaaaattgatAATAGAATTTATCTTAAGTGTGCCTAGTTTAAAAACATCATGCTAGCTTTCTAGTTTTCAGTTTGGGAATGCCACAGGACTCAGAAGTTTTGCACCCTCAAGATCTTGTTTCCCCTGGAGACTCTGTGTTTTAAGTATAAACAGGCTGAGTGTGaagctgcacacctgtaattccagcacttggtaggctgaggcaggaggatcaccacgagtttaaggccagcctctgctaaatagtgagtttaaggccagtctgaattacagagtgagaacttgtctcaaaaaaccaaaatgaataaataaagtagaaacaaagtatacttttaaaagtaacaattctctttctcatttccatTTATCAGCTATCTATAGCTGCTGCTCAGAGCATCTAGTTTTATGCTATCCCAAATGACATCCATTAGCCACACGTAGTTAACTAAGCACTTAAAATATGGCTAGTGTGACAGAGGAAgtcaatcattttattttgttttaattggtttaaattttaaaat--atggttaatTCAGTTACTGGGAAACTTTCAGTTTATTTGGGACCATTTGAGCAAGTGAAACTTTTTCAaatgtaacttttatttaaatataaatgaaaagaaaatatttccaatgaAGATTTAGCATAGTAAATAAAATGAGCTATAAGTAT-AAATACAGACAGGATTTGGAAGATAAATTCAAAAACAATTCAAGTATCTATGA---ATGATTGTATGTT-AATTACATGTAGAGATTTATAGACATATGGGCTaagatatattattaaaattaattttgtcttttttcatttttgaatttggcaattagaaaatttaaaattgcacATGTGACTGACATTTTTATTCAGTATCACTGTACTAAACTATTATTGCCATTCTGAGATGGAAATTCTGATTTAAACCAAGGAAATTTGGTGTTTCATTTGGATTGTACAGCTgctttaatataca

a score=3509
s chr3           103874194 74 + 160039680 AAGGCTTATATTGCTACCCAGGGTCCTTTATCTACAACTCTCCTGGACTTCTGGAGGATGATTTGGGAGTACCG
s HiC_scaffold_1 164278087 74 - 233722169 AACGCCTATATTGCAACACAGGGATCTCTTCCTGAGACTTTTGGGGACTTTTGGAGAATGATATGGGAGCAACG

a score=57919
s chr3           103875419 2440 + 160039680 GctttctttctttctctctttctctttctttctttctttctttcttAGATGCTGAAATTAGGTC-------------AACAATGGCTATGT-CTACTTTTTCAGGTTCTAGGAAGTCTGTAATTTAGACATCCTTTAATTTCTGTCTTT-TATCCTTTGGAGACTCCCTATCATGCTGCTGGAGCTGAAGTCCAAGGGGGTTAGGTGTGCTGTGCCTAACCTAAGATGAAGAACACAGAGCTG------CTTCTGAATGAGGGAGTGGGTTTCATTTTGTAGGAGGGATTAGACTATGTGGAGGGAAACCATTACCTTCTCTTTTATGTGACAGAAAAAATGTGAGCGTTATTGGGCCGAACCAGGAGAAACGCAGCTGCAATTTGGCCCCTTTTCTATATCCTGTGTGAGTATGATGT--GTTTCTATCATGGCTAAGTAAGGCCTCCAGAATCTACTTTTTAGAAAGCATGCCTTTGAAATTACTAATAATTTAATCTTCTTGTT---AGGAAGCTGAGAAAAAGAAATCTGATTATAAAATCAGGACTCTGAAGGCCAAGTTCAATAATGTAAGTATAAAGCAGAAAGAATAAAGTGAAG-AGATGAGACGAGATGAGACAGGTA-ACAtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCTgagagagagagagagagggagagagacagagagacagaCTCAGGTGCATGGAGCCATGGGTGGACTCAGGGCCTTTGATGTCTTGGGTAAGTCTTTATATTCATAAGAGA-------------CTCTGCCC-CTAATTTGTTTCACACTGTGGCACACATAAAAATTGATATTGGTAATA---TGAATAGAGGTTATATGAACAGTGGTTAGGCACTAGGGTCCAACTTG----------ATGCCTTAGACTCTACCCTGCCTTGCTAAAAGGCAAGGGGAGTCAATATATCAACATGTCTGTGACCTATTTGGGACACTCTAATTTGAGGAAGATTTGGTTTGGACTATTTTC---------TTTTTGTGTGGGTGGGGTTGTTAGGGATAAGACAATGGAAAACATCCTCATGT------TTCATAAGGCTT---------GAGAGCTATGTAGAAGAAAGGAG--------------------------------------------------------------------------------------------------------ATTTTTTTTTTTAAAAAAAGG-------------------------------------------------------CCAGAG-----------------GTAGTA----CTTAATCAGATTAATTTTTTGGGAGAATGAGG---TGGGATCCTCAAATTCTTCTCTTATTCTGTTTTTTTTTTAATAGGAAACTCGAATTATTTACCAGTTTCATTATAAGAATTGGCCAGACCATGATGTGCCTTCATCTATAGACCCTATTCTTCAGCTCATCTGGGATATGCGTTGTTACCAAGAAGATGACTGTGTTCCTATATGCATTCACTGCAGGTAAGATGCTGTGGCTGAACCTTCTACAGGGaacaagaacaacaacaacagccacaacaacagaaacaaATGAGGGTCTGGCTAGGATGTAATTCAGAG-AGAAAGTCGGTAGTTGGAACAATCTATTATAAATCCAACTGGTACATTAAACTAATATCTTTCATTATTATTGTGTGTTTATATGCACATATGTGCACCCAtgtgtatgagtcacaacttacatgtggagacacagacaaactttggggagatcgtttccttccaccgtgtgggctctggggtttgaacttggatctttaggtgaatacatcaagagttattactcactgagacatttgctggaccTAAACTTTCTCTTAAGTTACTTATGAGCAT--TGGTTCTGGGAATTC---TTGTGAAAAGCTGCCA-AGACGTGT-CTGAGGTCCACTGTGGCATGACAAAACATGTTCTGGGACATGGTGGGATTTGAAGG-----TTCATTTTCTCC--------CTCCTCAAATCTGCT-ATGGAATTTCCCAGCCATTGTCCGTTATCT-CTGCCAGCAAGTGCCCATGCTATGTGATCTTCCGTTTCAGTGCCGGCTGCGGAAGGACAGGTGTCATTTGTGCTGTTGATTATACATGGATGCTGCTGAAAGATGGGGTGAG--TTTCCCAGCAAACACTTCCTGTTTTCTTACTGCA-TGCATCTGGGCTGCAGA--AGTTCCACTTTTCAGAGCATCTTCACCACTCATCTTTTCGTATGAAGTGGGTCACTTGTAAATCTCCTCTGTCATATAATTGAATTAGGTCCTCAGTTGGTGC--TTCC---------TAAAGTGTGGTTCCAGGGGGGAGGCATATAGCTCAATATTAG----TGTACTTGCCTTGTGGCAGAAGGCCACATGTTTGATCCACA-CATGAcaaagtgtgattctc-------tagggccaaggttatctgagaatgtgttagaaatataaataaaaattctggcctaccgatgaatctagaaagtttaggggttgtgagccagcgagccctctgggtgactctgggaaatgctaacatttgagaactattgCCATGAATTGCGTGTTTCCCCTTCCTTTATCCAAATTGCTCTAGCAGATGGATTTAACTT-ACCAAAATCAAGT-TTGTGCTATT
s HiC_scaffold_1 114261179 2384 - 233722169 gcttatattctttttttttttgtcttt-ttcctttttatcagtaccagggatcgaactcatgactgcctgcttgcaaggcaggcgctatgtgccgctgagctaaatccccag----ccccagttcttatattctttaatatttgcttttgctttcttgggAGATTCCAGATTATGATGTTGGGGCTGAAGCCCAAGGGGGTTGAAAGTGT-----CTAACCTAAAGTGAAAGACATAGAGCTGAATCTACTTCTGTATAAGGGAATGGGTTCTATTTCCCAGAAGAGACTAGAATATATGAAGGGAAATCACTATATTCTGCTTTGTGCAACAGAAAAAGTGTGAGCGCTACTGGGCTGAGCCAGGACAGATGCAGCTGCAGTGTGGCCCTTTCTCTATATCCTGTGTAAGTAAGATGTCAGTTCCCATTGTGACAGAGCAAAGCCTCCAGGATCTACTTTACAGAGAATGTGCTTTTGAAATTGCTAAtgttttaatcttctttttcttaGGAAACTGAAAAGAGGAAATCTGATTATATAATCAGGACTCTAAAAGCCAAGTTCAACAGTGTAAGTATAGGATAGGAAAGATAACCTCAAACAGCTCTG--GAGACCCAGCAGGTAGATATATGTGTGTGACTCAGT---------------------------TCTGGACAAAAGAGTATGGGGAATAGTGG-----------------------------------GGAAT-----------ATGTCCTGAATAAGTCTTCATATTAA-AAGAGATCTCTGGTATAATCTCTGCTTTCTAATCTGTCCCACACCATGGAGCATATATAAAATGATGATACTCATGGGGTAAAAAGAGGCT---------GTGGTTAGAGACTGGGAAGCAACTTGTGAGTTCAGGCTTCCCTAAGCCCTATTTATCCTTTCTGAA--GCAAAGAG-TTTAGTGTATCAGCATGTCTGTGACCCATTTAAGACACATTA--TTTGGGAAGATCTggtttggaatattttcatatcTACCTCCTCTTGTGAATGGGATGGTTTGGGTTAG---------------CCTCAAATCACTTATTTGTAAGGCATCTGTTCAACTGGACCTATAGAGAAGAAAAGAGCATAAATTACCCAAAAGAACATATATACTTAgtcagatgatgatgatgatgttttagggactgaactcaggacctttgcaatgagctgttttctagccctttttattttttattttgagacagggtctcaccaagttgcccatgctgggctccagcttgtgatcatcctgcctcagcctcccagagtgctgggacaaAGGCATGTACCAATAGCCCAGGCTGACTATTTTTTTAGG----TTAGGCACTCCCAACCTTGAACTCTGCTCTCATTCAGGCTATTTTTCA-TAGGAAACTCGAACTATCTACCAGTTTCATTATAAGAACTGGCCAGACCATGATGTGCCTTCATCTGTAGACCCTATTCTTGAGCTCATCTGGGATATGCGTGGCTACCAGGAAGACGACAGTGTTCCCATATGCATTCACTGCAGGTAGGGTGCTGTGTGTGAACCTTCTGCTTAGAACA--AACCAAAGATCCAGTCACACT----------------------------CTGTAGTTGAAAGCAAAAGGTCAGTAGCAGAGACAAACTGCAAGAAGTTCAACCTCAATGTTAAATtcatg--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttttcctgatgttgCTTGTGAACATTATAGCTTTAGTGACTCTTGTTGTGAGATGTTGCTATGGACCTGTCCTGAGGTTCACTGTGGTGTGAT-AAACATGCTCTGGAAAATAGTAGGGTTTGAAAATCTTCTTCATAGGCTCCACTTGAGTTTCCTCAAATGTCATGGTGAAAATTTCCAGCTACTGTCAATGATCTACTCTCTCTAAGTATAAATCTACTgtgttctttcatttcagtgctgGCTGTGGAAGGACTGGTGTTATTTGTGCTATTGATTATACATGGATGTTGCTAAAAGACGGGGTGAGTCTCTCTCAGCAGGCACTTCCTATTTGTTTACTCCATTGCTTTCAGATTGAAGAATATGTTTGTGTTTCAAAACATCTTCAAAATTCATCTTTT-ATAGAACAT---TTACTCGTAGGCATACTCTATCAGATAACTAAATTAGTTCATAGGTTGGTGTAGTTCCTAGGTTGGTTAAAATGTGGTCCCAAaagctgggggtgcagctcagtgaaaGAGCATTCACCTACCTTGTG---TagggtcttgagtttgatctccagcactgaaaagtGTG---CCCAGACAAGTAGCATCAGCATTACCAG-GGATTTGTTGGGGCCCTATA-------------CCATGGACTCATCTAG-AAGTTCTGTAGATATAGCCCAACAAGCTCgccaggtgattctgatgtatGCTAAAATTTAAGAGCTACAGTCCTAAAGTACatacttatttttcctttgtccAAACTG-TTTAGCAGATAGTCTCAACTTAACCTGAATCATATGTTGTGTTCTT

a score=13112
s chr3           103879458 364 + 160039680 TTTTTTCTTGGTGTTATTCTATATGAGAAGAGTGGGTATCCTAGGAGCACAAGACTAGGAGAAAGCGGCA-TGATTTGTTAGCAAA----AAGATAAAAAAATTTTTTCTCTTTGGTTTGACAGATAATTCCTAAGAACTTCAGTGTTTTTAATTTGATTCAGGAGATGCGAACACAGAGGCCTTCGCTAGTTCAAACTCAGGTACGGACTGTGGTGAGTGGATGACAATGAGTGTCTGAGCCTTGCTGGGTGTCTGTGTTTATGGTGGGACCTTCGAAAGCCGCAGAGTACACGTGAGCAAGGCCACTCTACTGTG-------------------CATTTTTC----TCTGAGTATCCCAGTG--TTTCCTGTAGCCCTTGGCCTGGGTCAGA
s HiC_scaffold_1 114264046 380 - 233722169 ttttcttttgttattattcCCTGTTAGGAGAGCAGATGTCACAGAAGTACAAGATTATGAGAAAGTAACAATGCTTTGTtaacaaatgacaaaaagaaataaattttccccttttatttgaTAGATAATTCCTGAGAAGTTCAGCATTTTTAGTTTAATCCAGGAAATGCGAACACAGAGACCTTCATTAGTTCAAACTCAGGTAAGAACTATGGTGAACATTTCAGAATATGTGTTTGAGTCTTG--------CTCCatctatagatgca----caaaaataaCTGACTATTCAAATACAACAGCAAT-TACTGTGTAGTGTTTAAAGCTCAACACATTTCTCTAATTCTGACTATCCCGATAGTTTTCATGCA-CCCTTGTCCTGTGTCAAA

a score=31098
s chr3           103880286 1471 + 160039680 TATTTATACATCAGTAATTTCCCTCAAATGTATACATT-TATACATCTTTAAGATGGAACTTA--ATTTAGTCACTCGTTCACTCAG--TCTTTCATTGATATTTATTATGTGCAAGGC-ATTTTGTGTATTTTTTTCTAGGAGTTATACTAAGTAG------GGAGATC-CTGA---------AGTGCTTCAAGTCCCTTATAAAGGAATTTGCATATAACTTTAGAGATAAAGCAG-----TTCAC---------AGTGGCAGTTTAGATGTTTTAATGTTCAAGTTGTGAAT-GAAGGGGAAACTGAAGAGCTGTTAATACAAAAGC-ATCTGTTTGGCCCACACAGGTTTTCCATGAATAGGTTATGGAAAAAATAATTTTTC--ATATGCTGTCTGTAGGTGTTTTCTATATTCAACCTATGAGGGG-AAAGTTTATGTGAAGTGGAAGCCTTAGCTGG---------------CTTGGAAGGAAGGCAGAGTTTATAAATACACAGACACGGCAATAAGCACCCAGCCTTGTTATAGGACTT-CAACATTAAATTTACAGGCAATACTCCGTTTCAGAAAATCCCATCTCTCTCTGGCCTAGTTTTAGGAATTCAAAAGTAACTGGAGAAACTTTCATAT-CTAGCATTGTTAATGACTAGTTAAACGAA---CCTAATGGTTGTAGCTGATTATTCCAACA---------CTGCAAAATGGCAGTCTAGCCAGATG-GTGCTTCCTGTTTGAGTCCCATTCTCATTCATAGActttgtctctgtttctctctgtctctctctgtctccccctctctttctctctctgacgaggtctgactttcgtacccccatctggcttagaattcaccactgaggactaggctggccttgaagttgcagcaatcctcctgccttagcttcctgagtgctggaattctgggagcaaatgacagtggttggctACTTTTTCTGTCTTTAAAAAAATAATAATAGCATTCCAACACT-CCGCTGGGTGATATAGACGCTGCATTGTTCTCTTGCTAAAAATATCT--TTGAAA----TGTGCTTTATTTAAGTAGGGTT--GTAAAGTTTCTGAGGAAGTGCTTTAGGAAAAGGAAAGGCCAAAGTGACGTA--AAAAAGCCATAAGCCTTGTAGCACATGGTAAGAGTAGGCGTCCCACTTCTCTGCATTGAATCACTATA--GCCGCTCATTTCCAACCTTTATCCAGTGGTTTACCTTTCTTTTGTATCTTTGCTGCTACACAGTTTCAGAAACTTGATCTGAATACA----CTAAACT--AAGTCAGACAATTCTGTTTTTTAAGCCACATGCCAGGAAGTACTTCTGAATGGCCTTGGACAAACTAAATGTAAGCAGGTataatagccttcctacttcatcgagcaattgtgaaggccaagttagagaatacatattgaagcTATCAATTCATATACTAACCGCTACTTGATAATTTTTTCCTAAATAG----AGGTGACTTACAAAAAAATGCACCTAGGATAACATACACAATAAAAAATGC
s HiC_scaffold_1 114265304 1315 - 233722169 TATTTCTACATCAATATTTTTGCCCTTATTTCTATATGGTCTCCATCCTTAAGATGGAAGTTAGAATTTACTAACTGATTCATCAAAAACTGTTAATTGATATTTATGATATCTAAAGAGATTTTGCCTAGTTTTT-CTAGAGCTACTTTTAAATAACTTAATGAACATAACTGATCAGAATCTAGTGTTTCTGG-CACTTATAAATGAACTTGTTCTCAGGCTTACAGGTAAAACAAGTGGTTTTACCACTTGTTTAGTGGCAGGTTAGATATTTTAATCTAGAAGTTGTGAGTTGAAGGGGAAAATGAAGAGCTATTACAATATAACCGATCTGTTTGGCCCACACAGGTTTTCCACTAATAGCttgtggaaaaaaatatttttttaatgtgtcgACTGTAGGTGTTTTCTATATTCAGCCTATAAGGGGGAAAGTTTATTTGAAGTGAAAGCATTAGTTGGTTTAGTTCTATCAGACTTGAAAGGATAATGATCCATGTAAATGTACAAAGATTCTAGGAAGCATGTAATCTAGTTATATAAGTTATAACACTAAATAAAACTATAACACA----TTCAGAAAATTCCATTTCA----GGCTTACTTTTTAAGTTTAGAAGATGGCTCAAAAGGCCTTCACATATTGACATTGTCAATGACTAACTGAACAAATATCTTAAGAGTCATAGCTGCTTTATCTGACATTACTTTAACCACAAAATGGCACTATAATCAGACGAGTGCTTCCTGTCTga-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ttcctttttcaaaaaaaaaaattaaagcatgt-aacaTTGATGTTGGGTAATACAGAC--TACATGATGCTCCTGATAAAAATCACTATTTAAAAAAGTTGTTCTTTACTTGTATAAGATTATGTAAAGTGTCAGAGAAAATACTTGAGCTGGTACAGAGGCAAAAGCAGAGTAGTAAAAACCCATAA-----------TATTATAATAGTAAGTGTC--ATTTCTCTACAGCAAATCtttatataaccacaaatttCCAAAGCTTATTCAATGGTTTACTTTCCTACGGTCTCTTTACTAGGACAAAATTTTAGCAACTTGATCTAAGTGCACACCCTAAACTAAAAGTTAGAAGATT-TAGTTTCTATGCCAAGTCccagaaattatttctgaatgatactggaaaaattgTTTATAAATGAGTATAATAGCCTACCTATTTCATGGAGTAATTATGAGAGTGAAGTTAGATAATATATATTGGAGCTATTTATCTATATATCAACTATCAT---GTACTTTTTTCCAGGAAAGAAGAAGATAgtttac--aaaaatacatttagtgt---atacctaatgatataggc

a score=20024
s chr3           103881691 1063 + 160039680 TTTTTTCCTAAATAGAGGTGACTTACAAAAAAATGCACCTAGGATAACATACACAATAAAAAATGCTAGCAAAGAAAAC----------AGAGAGGTT--------AAAGATAAGTTAAAAAGTAGAGTTCGCATAGGAAAGAAGCATGCCATAAAATCCTTGTGTGTTAGCCACAGTTGATGTAGAATAAGTGTTCCTCATAGCCTAACAGTAT----GGACACATCCGCCATAGGCCACACACATAAGCCACCGTTCCTGGGTTTAGTGATAGATGG--ATGTTGTTAG-----TGATGGATGTTTCCACTTTGAAATAAGCTTCTGTAACTCACCTGATGTTCTGATTTTCTTCATTTGCCTGCTGGCTTGTGATACTCTCCAGGAACAGTACGAACTGGTCTACAGTGCTGTGTTAGAGCTGTTTAAGAGGCACATGGATGTTATCTCTGATAATCACCTTGGAAGAGAGGTAATGTTTAAATtatatgtatatgtgtgtgtatatatgtgtgtgtgtatatatatatatatatTTTTTTTTTTACCCATATGTTTTTGGTTAAAGGCTCTCAGATTATTTGCCAGATTTATGTATAGTCACAGCTGAATTGGAATGTC-----------AGACCCTGCC--------------------TCTAAGAACAAAAATCAA----------AACAAAGCCAATTTTAA----------------------------------TATtttgtgagttca--------atgccagcctg---gtctacagagtgagtgcc------aggacagtcagggcta----------ctcagaaagaccct---------------------gtctg--taaaaCC------------------Aatatatatagcacattatgatgttttaaggtatgtatac-atgtggactgactaaaccaagatgattaacctattcattattttatttacttataacttaagatctatattctatatagtttattaatacataatacatcattattatctgtggtcattgtattctatagtaaaactcctgaatttaatccttttatctagctgaaatttcgtgtctgttgatcaaca-ctgtctcaaaatttctgtcttactccctgatcactagcactctactctgcctttgtgtg------tttag---------------------------------------------cttatttaacgcagagcaatgtcctccaggttcatctaagttgtca
s HiC_scaffold_1 114267112 1176 - 233722169 tttttctttaaata------------aaaaaaatacatttagagtGAAACACACTATTAAAAACGtgtacaaagaaaaacagaattagaagggaagatggaggaagaaagataaataagaaagTTGGATTACAGCATAAAAGAAACGTgccataaaatatttgtacattagCTACagttaa-----acaaaatatttaacaatttctAGCAATTTCTTTGGA---ATCTTAAATGGGTAATATAAGCAAA-----------AAGTTTAATAACTGTTGATAATCTTTTCAAGTATTTGATGGG-GTTCATAATCTTGAATCTTATTTAGTAGCTCCCCAAGCTTTTTGGTTTTCCTCATTTGAT--CTGGTTTGTGATCCTCTTCAGGAACAGTATGAACTGGTCTACAGTGCAGTATTAGAACTTTTTAAGAGACATGTGGATGTTATTGAAGATAAACAGTCTGGAAGAGAGGTAAAGTTTAAATTAGTAGTACA-------------------------------------ACATTTTTTT---------CATGGTTTTGGTCCAAGGATCTCAGATTAATTGTAGGACTTATCTATTGTCACAGCTAAATTGTAGTGTCCGATATGCATGAGACTGTACCAGATAATTAATTTTAGATAATTTAACTTAGAAAATTAATCTTTTGGTTACCATATACAATTTTAAGCTAATTTTGGAAAAGTTATTTATACAGGGCAACTATGTTCTGATctcatattttatataactgtttGCAAGTTAGAAGTAAGagtaacaaatataaaatgatcagagctgagtgatttttttttgggaTACACTAGCTTTATTTTAATTGCTAAGGTCTGATTAAAAtctttaagtttaaatttttaaataaatatggtgTA-CATGATGTTTTGACATATGTATACAATGTGGAATGACTAAATTGAGCTAATTAACATATTCATTACCTCAT-----------TTAAAATCTAGgttctttaaaatttaagcatacaCTATAT----------TGTGTAGTCA--------TatattaaatttcttaaatttattcttattgTCTAAATGAAATTTTGTAACCTTTTACTGACATCTTCCCCAaaccctcccttcctcttcttggTAACCA-CACTCTACTCTGCATTGATGAgttctattttagttttaatttcacatataaatgagttcattcatttttctttctgttcttatttcATGTAGCATAATGTTTTCCAGGTCTATC-ATGTTGTCA

a score=71027
s chr3           103885342 4201 + 160039680 [encoded data, 4868 characters]
s HiC_scaffold_1 114270527 4484 - 233722169 [encoded data, 4868 characters]

a score=9576
s chr3           103900171 584 + 160039680 TAAAATATACCATTTAACATGCTTATATTCAAGTTGATCAAATAAAATTAATACCCACATGGCATCATTAATTGATCATCTATATGGCACTAACAATAATAGTAGGATTCTGGAAAAACAGGATGGTATCACTGGAGTTATTAGGAAAGCCTTTACTCTGCAGAAGATTGGTCTTAGAAAATT----AGAAAAAGA-------AGAAAGAAATTACAGAAG----AGATGAGAAGCCTAAGGAGACTC--------AGGGGAGCATCATGTGTGCAAAGAACCTATGAGCAGGTTTCCAGTTTAT--TTTATAGTATATAGAGATAAAATGCATGCATGTTAGGCAAGCGTTCAAACATATTGTGTTCATACATGCTAGGCAAGTGTTCAAACATGTGTTCATACATGCTAGGCTCTAGCACTGAGCTTT-TCTCCGGCTGGTGACAAGGTTATTGTCACTGCTATAGTGGTTCAACCTTGTAAAGTATAGAAGAT-AGTGTAGGTAGATAAAATGTAGCAAGGTTTTGAGGGTCTTAGGCTAGCCAGAAGGCAGCGAG---------CCAGAAGACAGTGAGCCA-GAAGGCAGTGAGCCTGGTCCAGGTTACCAGCTGG
s HiC_scaffold_1 114279690 544 - 233722169 TAAAAAGCACTACCTAA--TGCTTATATTCAAGTTGAATAGATAAAATGAATATCGACATGGAACCACGAAGTAATAATCTCTGTGGCACTGAGTATAATCACTGG--TCTGAAAACATGGAATGGTATTATTGGAATGGTTAGGAAGGGCTTCACT-GACaggagaataattttttaaaagtctggagagacagacagatatgAGAGGGAATTCCAGGAGCAGTGAATGATCAGTCTACTGTAACTCAAATGTAGAGATGAACATGATATGTGCAGAGA------GAGGGAGTGAGTCACTTATTATTTATGctgt-tggggactgaaccca-gcacCTCACACAaa----------------------------taggcaagt---------------------------gctgtgccactgaactgtatccacAGCTCATGAGTGCATTACTTTTATTGCAATAGAAGTTGCAGTTTgtgagacagagaaaataaattttggtaGATAAGACATGGCAAGATACTGAAGGACTT---------AAAAGGAAGCCAGATAAAAtatccagaataggcaaatccataAAGACAGCAAGCACATTAATGGTTGCCAGTGGG

a score=6818
s chr3           103902059 138 + 160039680 TTCATTGGTGGATTTCTTTGCTTTGTTGTATACTTTTTTTTTTCTATTTTACAGATCGACATCAGGATGGTTCTCCT---CCACCTCCTCTCCCAGAAAGAACTCTAGAGTCCTTCTTTCTTGCTGATGAGGACTGTAAGT
s HiC_scaffold_1 114282290 129 - 233722169 ttttttgatgGGTTTCTTTG-----TTGTATACTTTTCCCATG-------ATAGTTCCACGTCAGGATTcatctccttctccacctccacTCCCAGAAAGAACCTTAGAGTCCTTCTTTCTTGCTGATGAAGATTGTAAGT

a score=13568
s chr3           103907612 408 + 160039680 TTTTGTCTTACTTTATAAGCTTACTCATAGGCAGATTTTTTATCATGTGATTTTAGGTTTATGATGGAAAAAATTAGCCTTTTCCTGGTTGCTTAAGCAACAGTC-TAATGACTAGTGTAAATTGGCCGGATGT--TGGCCTGGTTCATTTGCCCCTGCCTGAATAAATTCTTAACAATATACTTAACATTCTGATTAGGCATGATACTGTGTC----TTATATTTAGCCACATAGTTAC-ATGTGGTCACTGATTAGCTAGTAATGACATCAGACTTACACATCTCTGATGTGGCCATGACAATG--------TTCTAACAATGGAATTCAGCCCAAGTTATTAGTCATTTCATTACCCTACAAGTAGAAATAGTTCCACTTGATGTGTGGAAACTGAAAATTGGGGAG-GATGGTAAAGGAAA
s HiC_scaffold_1 114288760 415 - 233722169 TTGTGTCATTCTGCATTAGCTTACTCATAGGCAAACTCTTC-CCACATGGTTTCAGTCTTATACTGGAAAAAAAGCACTGTTTTTTGGTTGATCAAACAATAGTCATGAGGAATAGTGATAACTGGT-GATTGTCTTGGCTTGACTCATTTGCCCAT-CCTGAACCAATTCTTAGCAATGTATTCAATGTTCTGATTAGGTAGAATA--GTGTCATAGCTAAATTTAACAA--TTGTTACCATGTGGAAAGTGACTTATCAGGAGTAAGATCATATCTACCTAGCTGGTATG---CCATACCAATGGACAAGTgttgaaacaatgaaaataatccaTAATTATTGGTCATTTCATTGATCTAACAGTAGAATTAGTTCCACCAGAAGTGTGGAAATTGAAAATTAAgaagagatagaaagtgaaa

a score=15825
s chr3           103908247 1228 + 160039680 TTGGGACAAATA--CTTTCAGTTCACATGTAG-----AGATTATTGATATC-CTTGTACATCCCTCCCTTCATCCAACT-GTGTTCGTGTCtatcttcagttcctagcccagttcttgacacacagtatttagtaagtgtgtatttaatTGGAAATGCCTGAAGTCTGCTAT-TATTCTAGAGATTCATACTCAAGTATTCTCCAGAAAGGAAATGTTCTAGATGCTTCTAGAAGCCTAATATTACATATATGTAAACACATATATGT---TCTCACATTATGTTT-----------------------TTAA------------------ATGTTA--------AGAACAAAAA---------------------------------------------AAGTAGGCAGT---------------------------------AATTTCTCT--------------------------------------------------------------------------------------------------------------TTACTTATAAGCTATTTTTGAGAAAGTTTACATGAACTTGAGAAATCTTTATTC-CTGTAAGACCATGCACATGTCAATTGTAGACCCAGTTTAACAAAATTCCTTGTAGAACTGGGCAAG----------------------AATTGATATATGTATATATTAAGGTGTTAGGAA--CATATGTATTTTTATATGTATGTATTTTTATATGCCTACACATA-GTAAATACAATAGCGAACCAA----------GAAA----TATAACAATGCCTTTGAGAGACTATGGCCCTAACTTAGAATCATCTA----TGAGGAAAA---CTGGCTGGAAAGTACAGGAGATTTAGGAGTCGAGGGAAATATAAGAAAAACCTCAGCTTGCCATAGATGAATTAATGTGAAACATCATAAGCACATTATGACTCATCAGAGGACAAAGAT--AAATTCCAAGGCCAAATGTGAGTCCTAACTTAGTGGTTTTGTGACACACCATTTCCTTGG---TTTTGGGTATTGCTA-----TATATTCTGTTTGCAAAGAAAATAACTCGTTTggtatggttgttcaggtctgtaataccagtagttgggatgccaaagtaggaagagtgccacaagttcaaggctgtcatgggatccatagtgagtttatgcctgcAGACTGAGGTCTTTCCCCCCCTCTCCATATCATAGTTATAATATACAAATATAATTTCAACAATTTAAACACTTTCAATATGATACTGATATATTTATTTTGGAGTA----TTGTTCTGGAGGAAATGTTTAATTTCAATGATCATGCAAGGAAATAAATTATAATCTAAACCTCTTGTCAGTCTTTACCCTATGTATTTTTCCTCTGATTACAGGTGTTTGTAATTCTTCCTCACCAAGCAAGCCTACAGAACGTGTTCAGCCAAAAAATTCCAGCTCCTTTCTGAATTTTGGTATGTGTATCATTTTA
s HiC_scaffold_1 114301445 1321 - 233722169 ttgtaaCAAACAAACTCTCAGCCCATATGTAGCATAGAGATTA---GTATCTCCTGAACTTCCTCACCTTCATCCTCTTTGTATTCACTTCTGTCCTCAGTGCCTAGACCAATGCTTGTCACATAGtattaataaa---catatttaattgGATCTGATTGAAATGTACTATGTATTCTAGTAATTCATACTCAAGTATCTCCCACAAGGGAAG-GTATTAGAATCTTC---AAATGTAAG--TATGTATGTGCAAACACATATATGTAGTTTTCATACTGcttctgaaatgaaaacaaaatgagaatattaACAACCTTTCCCTACCTGTATGTTatttcttagagaaaaaaaatttttttttggtaccagggattgaactcatgacctcacacttaccaggcaagcacttgagccaactgagctaaatcctcagcccaagaaaatttttttgagacagggtcttcctaatgtagttccagctggccttgaactcactatgtaccccaggctggccttgaacttgtggcagtcctcctgcctcagcctcctatgtgctgggattacaggccagctgtttcttaaaaaatttatttaaactgaagttatctttttttattgtaaGATAGTATATGTGAAAATT-TGGACC-AGTTTTCATGGATTGCTTTAAAAActagacaaggaaaaaaaaaaaactagggagAAACTAGTATCTGTGTATATTAAAGCACTGAGAAGACAGACATATTTTT-----------------TAAGCTTGCATGTAAGTAACTGAAATACCAAAACAAAGTAGCATAAGAAAGTGGTATACTAATGTTTTTGGGAAACTGTGGATCTAAATTAGAATTATCTACAACTGGGGAAAAAGGTAGGCTTGAAAGTGAAAAGGAT---------------AATGTAAGAAAAA--TCAGATT--CATAGATGAATAAAT---------------------------------AAGGTGAAGATTCAAAGTCCAAA---AAAGTTGATTCATGATATAAT---------ATATCTCATTCCTTTAGCAGTTTTCTTTACTGTTAGGATTTGTCATCTGATTGCAAAGAAAAAa---------------------------------ccattaaacaaaa---caaaata-------------aaacacaagattaTTGTGTCAACCAT-------TTGTAAGTGC------------------------CTATGTTTTTGTTA------------------------------ACATTT-------gatattgatatatttatttgggAGTACTAATTACTCTAGAG---ATGTTTAATCTCAACAATTATGCAATTTGATAAACATTAATATGAGTGTCT---CATTGTTACccttgtgtgtttttcttttgattatagGTATCTGTAATTCTTCCACATCAAGTAAGCTTGTAGAAGCTATCCCATCAAATAATTCCAGATCATTTCCAAATTTTGGTATGTGCattatttta

a score=169338
s chr3           103910149 8066 + 160039680 [encoded data, 8926 characters]
s HiC_scaffold_1 114303808 7818 - 233722169 [encoded data, 8926 characters]

a score=136055
s chr3           103927858 3522 + 160039680 TGTTTTATGGCTTATTTTGTCTTTGGCTCAACT------GTGTGTACTATAATAATTAATAGACTGACAGGAAAATGTGAAACAACGAACA---TCAATTTAGATTTTA--------------------------------------------TGT--AACTAAATACTTCATATGGTGTAGCACACAGTAATTTCCATGTTTTATCTTTATTACAA---GTCATATGAAA--------TATATCCtgtgtgtgtgtgtg-----tgtgtgtgtgtTG---------------TCCATGGTCTTGCACATATTAAGAAGTGTTACATACCATTTA-GCTATATTTCCACCAATAACTCACTACCAGGTTTTTTGTT-TTTGTTTTTTAGTATAATCTTTGACCCAGAATATTA----------CTGTATTTTAAGATTTTTGTCTCATTTTTTTTATTTCTAATGATAAAAAATGTAATAACA--TTCTCAGAAATTAAGGAGAGGTT-TTTAAATTTAGATCAAATACCTTAAGACACATGTATATTGACACTGGTCCTAGCAACTAACTTATTTTTAATTATTGTGGCCAGAAACAGCAGATGAAAATGGTAAAACCCAGAGAGCTGATGATTTTGTCTTGAAGAAAATAAAGAAGAAAAAGAAAAAGAAACATCGAGAAGACATGAGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGCAAAGAAATTCTCACCCAAGGACAGCTAAATAGCACTTCAGGAGTTAATAAGGAGTCCTTCAGGTATTTGAAGGATGAACAGCTGTGCAGATTAAATTTGGGCATGCAAGAATATCGGGTGCCCCAGGGAGTACAGACACCTTTTACAACGCACCAAGAACATTCTATTCGCAGAAATTTCTTAAAAACAGGTACTAAATTTAGCAACTTTATTCACGAAGAACACCAGTCCAATGGGGGTGCTCTTGTCCTTCATGCATACATGGACGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCTGAGGAGTTTCTTGCTTTGACATTCAGTGAAAATGAGAAAAACGCTGCGTACTATGCGTTAGCAATAGTGCATGGAGCGGCCGCTTATCTCCCAGACTTCTTGGACTACTTTGCTTTTAATTTTCCCAACACTCCAGTGAAAATGGAAATTTTGGGCAAGAAAGATATTGAAACAACCACCATTTCAAATTTTCATACTCAGGTAAGGTAAAAATTATTGTTCAATTGGATAGTAAATACAGTTTCTCAACAGAATTAATTTCATTGTATTGCACAACACACCTGCACACATTATAAAAATTCCTCATAATAAAAGTACTTCAAACTGTCTTTTCTTTAAATTGTAATTTC-TAACTGGTGAGATCTTTGGTGTGGAACTTTTACTTGCTTGAAGAAATGATTTATGCATCATATGTG-----------TTTATGGAAAA-AGCTTACAAATGAA-------TCCAGGCTATTGTAGAGTATATG--------ATTTAGACATTGT-AGCCTTAGGGTAACATTAGCGAAGACT-----CTGATACTAGAATAGAAAACAGAAGGTGTTGGCTTATTTATTTACCAGGT-TTTGCTTAAGTTCTTTCT--------GTAACTTGTTGGCAGTCTATCCCAGAAATGCATCCCATTGGTGTGATTTGTG------ACTGGAGAGACCGCCATTGCCTCTGCTCCTTCTGCCTGTGCACTGTTGTAGGTAAAGACATTTTCTGATTGAAGCCTTGCTTGGGCAGTTAGGCTTAAGTCAGCAGGGAAACGTT-CCTTTCT-AACCAGTTTTTAG---------------------------------------------------------------------------------------------------CCAAGTG-------TTCCTTTCAATGGAATTATTGTAGAGCATTAAAAAGAA--CAATAATGGATCTGAGGGTTTTTCAGCGTTTTTGTTTTTGTTTCTTCGGTTGCTTTTCTCA----GCTTGTAAGTATAAAGGGGAAGCACTA--------GGCTTATACTGAAGATACTGCGGGTCAAGTTCAGTGGAGACCGTTTCACTTTTTAAAGAT--TTA-TATAATCTGCTTTTTCAGGTTTTATAG------TGATTTACTGTCATTCTTTTCCCTTAAAAATTTTTTT---------TTGAGGTAAAT--AACGTTATGCAATCCGACTCTCAGCTGCTTCTGTTATAGTGGGTTCAAGCCGTGTGCGCTCACCTGAACCCTCCTCCAACTTGG--ATTTTTTAGTTCATCTTCCCATTCTTGCCTCCAATGAGGGGAGTGTCCAATTCAGATTTACGGGCTTCAGAATCTCTCTAATTGAAGTTCTCTCTGCAGTAGAGAGAGCAGGAGCAGCTAATCTGGAGAGGTCGCAAGATGAGTCTGCCCAAGATGTTGGAACTCCATGTGCAATAAAGGGCTTCGTCTTGGATTTTGGCCTTGTTACTGCAATCAGGTACCAAAGTACTGACTTTTGTAGTAGATTTTCCTTTCTTTTTCTTTTTTAAAGGAGTTTTTCCCTTTGAAAATTAAAGAATCCTACTTTGATAAATACTGAAAAAGAGACAAGAAAACAGCTTTAATCTAGTCTA-----------------TAGTTAAT----GAAGGTACTGCTGAGAGCGGGAT------------TTACTTTTTTAGATTAGAGAAATTAAATAAATTTTCTATTC----TGACAGATCAGCAAGTGTATCTAAGAAACGAGTCAGA-AATTTGGGGGAGATAA-------GGTTTTGTAAAGGTGACTTTTTAACCTTTCGCTTTAGTCTA---TAGATTGAGTTTGTATGTCAACAGACAATACTC-----------CTGCTAAATAAGACATCTCAAAATGGTATTCCCTGCTGATTTTTGTCTTCCAATTAATTTTTTTAAATGGAGCTGATATTTAAATGACTGTACCAACAACTTACCTTGAGATTTACTTTGTTGTTTATAAAGTAAGTACCCATAAAGAATATGTTAGATTATTATGGAATTAGATCTTGC---------------------------TGCTTTAGCCAT----GTAAGAGGACTGA---AGAC--GGGGCCTTGTGACTGCTCCAGGAGCTTAG--------------------------------GTTTTCATTAGCCCTTGAACCTTGA-----CATTTGCATTTGTAAAATCTTTGATGAATGTGGAGATGGAAGCTAACACATTAGTTCACATTTGTTTATGGCTT------------------------------------GTATTTGAAACAACCAGGAGGTAGGTAAGCAGTTTT-TCTCTGCTGTCCATTGAAGACACTGTTCATTTGTTATGc--agtcagtcagtcagtcagtc-agtaagtAGAAGGCTCAGGAGAGAATCGAGGAGGCCGTCTGACTACT--------CAATGTGACCGA-------------CCGACTGCTGGGAACGAGATTGCTGTGCTGTTTGTCTAACATTGTGGTTATGAAGCTAAGATTGTATATCAGTGTAAAGTAGGAGGAGCTAAGATTGTATTTCAGTGTAAAGTAGGAGGAGCTTTGTTTTTCATATTTTTAAAACAAATGTGCTTAGATGCTGGGAATTAAGTGAACACATTGGGCATTTTG---GAAGTCTGTGTTCTGTAGTCTTAGGAACTTCTTCTGCCAAGCTATAAAGTCAAGCTAAAAATTATAGGCTTTAAAATTTTTATTTCATA-------ATTTAAACATGTAGCCATAATAATTGTTCATGATTGTACTTCAAGATAGGTTTC------------AGCTAC-------TAGACACTCAGTTCTTAAAAGCACTAACT-GATGAATTTAGCCTAGC-AGAGAGGTGAGTA
s HiC_scaffold_1 114320315 3839 - 233722169 TATCTTATGGTTTAATTT-CCTTTGGTTTGATTTACTTTACTTATACCATAATAATTTATAGACTGACAACAAAATGTGAGTTATGGCACTGCTTCAGTTGAGATTTTACCATAATCATTTCAAACATTTGCACTCAGGTAAGGTAAAATTATTGTTAAATTATTTACTAAATATACTGTCTCA-ACAGCAAGGTTAGTGAATAATGTTCCATACAGTATGGCACATTTAAAGTTAATTTATATGCTACCTGT---TGTAATACCTGCTTTTTTGATGATACTAGAGATCAAATATGGGGTCTTGTTCATGCTAAG--------CATACAGTCTGCGCT-------------TGACCAAACCCCAAGCCTCTTGTTGCCTGCTTTTTAACATAATCTTCAACTCAGaatgttagctttttttttttttttttaagatctttgTCTCATTT-----ACTTACTAAAATGTAAATTGTAGTGGCAAATTCTGAGAAATTGAGAGGTGGCTACTTAATTTGAGATCAAGTACCTTAAGAATCTTGTATATTGGCACTAGTCCTAGCAACtaacttctttttaattattgTGGCCAGAAACACCAGATGAAAATGGTAAAACCCAGAGAGCTGATGATTTTgtcttgaagaaaataaagaagaaaaagaaaaagaaacaccgAGAGGACATGAGAGGAAGACGCCTTAAAATGTACAATAAGGAAGTACAAACCGTCTGTGCTGGCCTGACCCGCATCAGTAAGGAAATTGTCAACCAAGGACAAATAAATAGCACTTCAGGAGTTAATAAGGAGTCCTTCAGGTATCTGAAAGATGAACAGCTGTGCCGATTAAATTTGGGCATGCAAGAATATCGGGTACCCCAGGGAGTACAAACACCTTTTATGACTCATCAGGAACATTCTATTCGtagaaatttcttaaaaacaggTACTAAATTTAGCAACTTTATTCATGAGGAACACCAGTCCAATGGTGGTGCTCTTGTCCTTCATGCTTACATGGATGAACTCTCATTTTTGTCTCCAATGGAGATGGAGAGATTTTCTGAGGAGTTTCTTGCTTTGACATTcagtgaaaatgagaaaaatgctgCTTACTATGCTTTAGCAATAGTGCATGGAGCAGCTGCTTATCTCCCAGACTTTTTGGACTACTTTGCTTTTAATTTCCCCAACACTCCAGTGAAAATGGAAATTCTGGGCAAGAAAGATATTGAAACAACCACCATTTCAAATTTTCACACTCAGGTAAGGT-AAAATTATTGTTATATTATTTAGTAAATATACTATCTCAACAGCATTAACCGACTTCTGTTGCATGGCACAC--------------------CATGATGATAAAAGCACTGCAAATTGTCTCTTTGTCCAGCTGTAAAATCTTGATTGCCAAGAACTTTGGGGTGGGCCTT----TTTCTTGAAGAAATACTTTATGAGTGTCATGCATCATTAGGAATTTTTTGGAACATGGGTTGAAAATGAAGTGTCTTTCACAGATCGGGTAATGTTTATGTGGAAGATACTTAGATTTGGTAAACCTTCTAATAACTTCGGTTAAAACTTAACATTTATATCAAAATAGAACACA-AGGGTGTTGGCATAGTTACCTGACAGACGTTTGCTGGTTTTGTTTCTCCTCGTCAGTAACTTGTTGGCAGTCTACCCCAGAAATATGCCCCATTTATGCGACATGGGAGTGTCACTAGGAAGGCCACCATAGCCTCGGCTCC-TCTGTCTA-GCACTGTTGAAGGTAAAGACATTTTC----TGAAGCCTTGCTTGGGCAGTTAGGCTTAAGTCAGCAGGGAAATGTTGCCTTTCTAAACCAGTTGTTAgtataacatatttttttttttttttaccggtaccggggattgaactcacaactgcctgctcacaaggcaggtgcttatgcctctgagctaaatccccagcccaagtataacatttttttttcactgaagttACTTTAGGGCATTAGAAAGACATTAATAATGTGTCCTA-----------------------CTTTTTCTTGATTGCTTTTCTCATAAGGATTATGAATGTAAATGGTCAGCTCTGCTTTTCatgatttatattataaat--------ttgaGTTTAGTGGAGA---TTTCACTTTTTAGAGATGATTATTGtaacctgctttttt---ttttaaagattatctAATTTGCTGCCAttctttt------aaggtttttttttttttaaatttagataaaTGCGCTGCTGTTTATTAAGACTCTCAGCTGCTTATCTTACGGTGGTTTTAAGCCACACAGATATATTTGAA-TCTCTTCTAACTTGAGTATTTTTTAGCGAGTCTTACCATCCTTACCTCCAATGAGGGGAGTATCCACTTTAGATTTATGAGCTTCAGAATTTCTCTAATTAAAGTTCTCTCTGCAGTAGAGAGAGCAGGAGCAGCCAATCTGGAGAGTTCGCAAGATGGGGCTGCTCAAGACGTTGGAACACGATGTGCATTAAAGGGCTTCGTCTTGGATTTTGGCCTTGTTACTGCAATCAGGTACCGAAGTGCTGActtttgtag--------------attttcttttttaaaggagtTTTTCCCTTTGCAGCTTAGGGAAtcctatttttataaatagtgCAGAAGAGACTA-AAAACAGTTCTAATCTTGTCCATAATCCCCATAAATCCCTAGTTAACAGGAAAAGATATTGCTGAGAGCCACATTAAcatattttgtcactttttaaatttagagagaTGCAGCAAATTTTCTCTTCTGGTTGATAGGCCAGCAAGCATATCTAAGTCATTAGACAGacaatttgggggaaaaaaatgtcCTGGTTTTGTCAGGGTGACTTTTTAA-CTATCATATTAGTCTACAGTGGATCAAGTTTGTGTCTCAACAGACAGTACTCAACCAAAGTAGTTAATAAAGAAGATTACTAGAACTAATATTCCCTGCTGATTTTtgtcctcc----aatttttaaaaatggagctgAAATTTAAATGACTGTACCAACAACTTACCTTGAGATTTACTTTGGAATTTATGGA-TAGTTGCTTTTGAAGAACATGTGAAATTAATA---AATTAGCTCTTAAACACTcagaattaaattaaatgttaagCACTTCAACCATCTCAATGAGAATATTGAGGTAGACCTGGAACCTAATTTTTACTTACAAATTTTAGTCCTCAGAGAGAAATATGTGGTGACTAGAGGAGGTTGAATTAGCCCATGAaactttaatttccatttgttcctGTAAAATCTTTGGCAGATGTTGGGATAAAAGCCAGTATAATAGTTTGGATTTCTTTAGCACTTCATGGTTCATAGAAATATGTTCACATTTATGTAGGAATATTAGAAATAACCAGAGGATAGgtaaaaaatttcatttctgttgtCTGTTGAAAAACCTGAGGCTTGGTTATGTTAATTCA---AGGCTGTAAAACTAATAAATAGAAAAGTCAAGGTGGAAAC--CTATGTCATCTGAAGAGTGTTCACACCATTTTGCCctgttttttccttattttggcCATTGTGGAAGAGatcagtgttttttttgttttttgtttttgtttttgttctaacACCATGAATA---GTGAAATTAAAGGATCTCTG-------TTTAAAACAAAGTACAAAAggctttatttctaatattttc------------------------------agcAAATACA--GGGTATTTGGGGTGAATTCTGTCTTTTGTGAAGTGTAAAA----TTCTGTtaatctgtaaa--------------tatag---tcaagtAATTTATTTTAGAGACAGTTACTAGAAATTGTTTACAATATAGTTACTTATGAC--TATTTCAAGATAGTTTATTCAGAATTGGGAAGCTACTGTGTAATGGGCACTTGGTTGTTAAAAGAACCAATTAAATGAGTTCACTTCAGTGGGGGACATGAGTA

a score=8751
s chr3           103951934 930 + 160039680 TTTAGAAAAGGGAAGTTGAATGGTGAAGTGTTTTTTT--------CCTTAGGAGATCCTTCTGC--AAGATGGCTCTTGGGAAACCTTCTTGTCAGGAAACCTTCTTGTCAGGACTGTGATTCTGAGATATTTTGCATTTAGATAAGAAATGATTATTTCTTACATTAAGGCACTA---------CTTAGAGGGATAAAATTTGTTATTTAAGGGATGAGGAAAAGG--TTTATAAATTTCTAATAAGGGAATTGAGAAAATGATTAGCACTGCCTTGTGAAGCAAATACAAAAGTCCCACAACAATAAATAAGCTTAGGAGTAGAGAAGAAGCTGAGAAGAAACTGTGCTCGGTGTCATAGACCCTGTGCATGGTGTCATAGGCCCTGAGCTCGGTGTCATAGGCCCTGTGCATGGTGTCATAGGCCCTGAGCTTGGTGTCATAGGCCCTGAGCTTGGTGTCATAGGCCCTGAGCTTGGTGTCATAGGCCCTGTGCTCGGTGTCATAGGCCCTGTGCATGGTGTGATAGGCCCTGAGCTTGGTGTCGTAGGCCCTGAGCTTGGTGTCATAGGCCCTGAGCTTGGTGTCATAGGCTCTGTGCTCGGTGTCATAGGCCTGCATTTGCATGTCTACAGCTTGGCTGAGAGAAGTCGTACTTACAGACT---CTCTGAGGGACAATTTCCATATAGAGA-ATTAGATACAGAATGCAG-AGAGTATGTGTAA----TAAATTCACATTATAATTTGAAACACCCATAGATAATATGTTGAATGAGAAATAGGCCAACTCT-GCAACT---------AGAGGAAGGTGCCTGGAAGAAAACT-AAGACAACCGATGACTAGAAAACAT-TTCTCATTTATCTGTAGGCTGTCATTACTGATTTGTTTTGGGTTGCATTGAC----ATGAAAAGTCAATAAAAAGTG------AGGTGAATTGATAAACACAGGAATTAGAAACCGA
s HiC_scaffold_1 114342171 707 - 233722169 tttaaaacagaaaggttGAAAGGCAAAATGTCTTCCTAAACAAATCGTTTGTAGGTGGTAGTACCAAGGATGACTCTTGGG-----------TATGGGAACCCTGAAGCAAGGATTTTAGTt-----aagtttttgaaataagtgtcaAATGACTATTTCCTGAATTAAGACAGTAGTATGGtagatttaaaagataaattttgatACTTAAAGGATTAGAAAGAAGGACTTATAAATACCTAATTTGGGAACTGAGAAAATGATTATCATTAGCTAGTGAGGCAGATACAGAAGGGGTA-------AAGGTAGTTTCTGAGTAGAAAGgaatttcataagaaaatgaaTTCAGTTTTATAGGTATTGCATTTGGG------------------GGTGT-----------------------------------------------------------------------------------------------------------------CTGTGGGTTGTCCAACAAGC---------------------------------------------------------------------------------------------------------------------AGTTGTACGTAAAGGTCTGACTCTGAGGGACATTTTTAATTTAGAGAGAACAGATAAGCAGTGCAGCAGGGTACAGGTGGTAgttaaatctgtattttaattgaAACCACCCACAGATAATATGTTGAATGAAAAATAGGTCAACCCTAATAACcacattttgaagagaaaaacattaGGAGGGGAAGTCAAGAAAATGGATGATTGAGAAGTATGTTTGAATTTGGCTATAAG--GTCATTAGTGATTTGTTTCAGG--GGACTGGTCTGGATAGAAACCTGATTGCAAGTGAGGCAAAGGTGAGGAAGTAGAGATAGAAAGTAGAGACAGA

a score=46636
s chr3           103953252 1382 + 160039680 AGCTTGATATCTGTCTTAGAGTCAAGTTAAGCTGAGGAGTATATAGTGGGCATGA---AGGGTTACTGAGGCTATGGTAGTCTTTGCCCTGCCAGTTT---TACTGTTTATTCTGTCTTTTC---------------AAAATAAAAAGTGtttttaaaattaaataatta------ttaaaGAAATCT-----TTCTTAATGCTTT--------TCTTTGAGGTAGTGAACTAGTGGGCAGACTTACACATTGAAATATTTGTTTGTGGCTGATATCA-------------CAATGTTTGGGTGACTGGTTAACTTTGTCCAATGAACTGACCATTGAACCCTTAGTATGTAGATGGAATACTAATACTAGAAACAA------TTCTCAGTTCTCCTTTATAGTGCACTTCAAACCTTTCCCCT---CTCTTTCATTGCATCTCAGGTCAACAGGACATATTGCTGTGGTACCTACCGAGCAGGTCCTATGCGGCAGATAAGTCTTGTTGGAGCAGTAGATGAAGAAGTTGGTGATTATTTCCCAGAGTTCCTAGATATGCTAGAAGAATCACCATTTCTGAAAGTGAGTGTTTCTTTAGACTATTAACCTTTTTTCAGTAGACACTTCCAGTATTATTTCAGTATATCATTATTTCAGAG-ACACATACAATTAGAGTACTCAGTTAATCTTGCTTACTAAAATTAAATTTTATATGCTAGTTCGTATAGAAATGTTTAGAAAAGTATTGTTATTGACTATTTCAGTTATTTTTTTAA-CATGTTACTCTGCAATATGGCTTTTATTTCTTCATATACACATGTGAAATGGCTTTTAGTATTTTTATTTGGAT---GGGAGATAATATGTAAACAGTCTAAAATCTTT--TAAATGTAACTTAATTTCTTTGGTTTCTAGATGACTTTGCCCTGGGGTACACTTTCCAGCCTCCAGCTACAATGTAGGTCTCAGAGCGATGACGGGCCTATAATGTGGGTGAGGCCAGGAGAACAGATGATCCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGACGGTAAAAGTTAATTGTGCTCAAATCAGCAAAATCACTCTCTTTAGTAGATGGTTTATAAAAATGATTGATACCTGAGTTTGGTTTTGAAGCT--TGTCTAGATT-TTTGAAGCATTCCTTTAGGTAAAAATTTATGTTGTCAGTTGCCTAGTTTAGATAACCTATTATATGGTCAG-------TAGTATCCTGAAAAA-------------ATGATTTTTCTTAAAACTT-----------------------------------TTATCTT-------------------------------------------------------------------------------------------------------------------------------------CTAACTGTCTGTAGGATAAACTATCATTCTCCTTAGTGTGGTCTATACAAAACTTTTAT---------CCTATAGTACCTTTGAGTCAGCTTTCAGTCTTTCCTAGC--TACTAAATTCTATTTCCAAACTATTGTCTCCTATTGCTTTTTGCTCTTGCACTGT-Atttttttttaagatttattt
s HiC_scaffold_1 114345411 1562 - 233722169 AGTTTGCTATCTGTCCTAAA-----------CTGGGGAGTACACAATGAATATGGGTTAGGGTTTATCAGATTGTGGTCTTTATTTTCCCCCCTACCTAGCCACTATTTAGTCTACTTTTTCTCCCAGGTAAAGatcatattaaaaaatagtttcagaATTTAACAATCACCATTTTCAGAGAAGTTTATCGGTTTTCaatattttgggggaaatgtTTGAACTCTAGGCTTAATA-----ACCTACATATTGAAATGTCTATTTGTGGCACATATCAGGCTAATATGTGTCAGTGTGTGGGTGCCT---CTGTTTTATCCATGGTACTGACTATTGAGTTCTTAGTATGTAG---GAATGATAATATTGGAAACAACAGCCTTTCGCATTCTTTAATTATAGTGCACTTCAGTCCTTTTTCCCTGCCTCTTTCATTTTATCTTAGGTCAACAGGACATACTGTTGTGGTACCTACCGAGCTGGTCCAATGCGGCAAATAAGTCTTGTTGGAGCAGTAGATGAAGAAGTTGGTGATTATTTCCCAGAATTCCTTGATATGTTAGAAGAATCACCGTTTCTGAAAGTGAGTGTTAATGCAGATTATTCAAGTTTT-------------------------------GATCATTATTTAAATGAACACTCCATATTAAAATGTTAAGCTAACCTTGCCTG-TAAAATCC---------------TTTGAATagaaatgtttagaaaaatattGATATACATTA------CTATGTTACTAAGTATGTTACTATGCAGTGTGACATTTATT-----ATATACACGtgcaaaaaatgttttagaaCTTTTATTTGGATAGGGAGGGATAACTTGtaaaaaaactaaacattttaaaaaatgtaactc-aTTCATATAACTTCTAGATGACTCTGCCCTGGGGCACACTTTCCAGCCTTCGACTACAATGTAGGTCCCAGAGTGATGATGGGCCTATAATGTGGGTAAGACCAGGAGAACAGATGATTCCTACAGCAGATATGCCAAAGTCACCCTTCAAAAGACGAAGGTAAgctt---ttttcccctaa-----aatacaattttttttagttGATTGCTTATAAAAATGATTGCCATCTGGGCATAGTTTGAAAACTACTTTCTAGATTATTTGAAGGCTTTCCTTAAGTAAATCTTCTAGTTGTCCATTCCTCATTCAAGATTACTTCTTATGTCATCAGAGTAAAACATTGTTCTAAAAACCAATTTAACCTTTATATCTTTTCTTAAAACCTGACTCCCACCCTGTGTGGTTGGttgtacatacctataatcctagcactcagaaggctaaggcaggcagatgaccatgagttcaaagccagcctgggctctataagcaagttcaaggccaacctgcacttcaaaacaaacaagcaaaaaaacagaataaaacaaaatacctgagacctAATTGCCTATTGGATAAAAGTTCAAATTCTTTGGTGTGGTctataaaaatcttttataaCTTACCCTCAACAGTGCTTCTGTGTCTGCTTCTAGTCTTTTTTAGTCATATTAAAT--TGTTTCCAGACAAtactctttcatta-tttttgcttttccactatgatttttatttaaaattcaatt

a score=20955
s chr3           103959944 350 + 160039680 TACCTTACTGCTATTTATTT--------------------CCTTTTACTTCCCTTGTTTTACAACCAAA-CAACTATAGATCAATGAATGAAATTAAAAATCTCCAGTACCTACCTCGGACAAGTGAACCCCGAGAAGTCCTCTTTGAAGACAGGACCAGAGCTCATGCTGATCATGTAGGTCAGGGGTTTGACTGGCAAAGTACGGCTGCTGTTGGGGTTTTGAAGGCTGTACAATTCGGTGAATGGTAAGTTCAAGGAAC-CAAATATAGGGTTAAGTAA---TGTCTAAGAAAATGTGGATTCTGTTTAAAAGATCAGGAACCAAtttttaaattttggtgaaatacacataacatagtttaccatgtaaac
s HiC_scaffold_1 114355495 372 - 233722169 tacctTATTGCTATTAAATTGTAAAGATTTGTTACTTAACCTCATTGCTTTCTTCATTTTACTGCTAAATCAATTCCAGatcaatgaatgaaattaaaaatctccAGTACCTACCTCGGACCAGTGAACCTCGTGAAGTCCTCTTTGAAGATAGGACAAGAGCTCATGCTGATCATGTAGGTCAGGGGTTTGACTGGCAGAGTACTGCTGCTGTTGGGGTTTTGAAAGCTGTACAGTTTGGTGAATGGTAAGTAAATGGATCTCAAATGTAAGGTTTGTTAATGCTGTCTAGGGAAATGTGGACTTTACTTAAAAAGTTGGGGGTCAGTTTTTAAgttgtggtaaaatacacatgA---AGGTTACCATCTTAGC

a score=361142
s chr3           103961197 10215 + 160039680 [encoded data, 11620 characters]
s HiC_scaffold_1 114357544 10995 - 233722169 [encoded data, 11620 characters]

a score=9334
s chr3           103981798 201 + 160039680 ACATCAAAAGGAAGAAGTTTTATCTTTT-ACTTTTAAAAGTACTGTGTTTTCTTGGCTCACTTCTGTTTTTGTTTTATTTTATCATAGGGTTTCAAAAACAAACCAAAAAAAATGGGCCATATAAAACCAGACTTGATTGATGTTGACTTAATCAGAGGTGAGTGGGGAGGTTGATTT-----TTATGTACA-TATCACACGGTCTCA
s HiC_scaffold_1 114388635 202 - 233722169 acataaagaaaagaaatgtttatttttttgcatttaaaagaactcttttttatgtgttta------tttttattttgttttatcttagggcttcaaaaacaaaccaaaaaagatgGGTCACATCAAGCCAGACTTGATTGATGTTGACTTAATCAGAGGTGAGTTCTAAAACTGATTTGTTTATTGTGTGTATTGTTACATTATTTCA

a score=21682
s chr3           103982542 604 + 160039680 TTTTAGGTG-TCTTCTATATATTGTGGCATAGTTATTTTCAGAAGTAACATTTCTCCATCATCATTAAAGTTTGTGCACTTTCTTCCTTTGCTTTAACATGTTGTGGTCATGTAAATAGCATGGTCTTCGTAGAG-ATGAAAGGAAGATGAACTTGGACACTATTGACGTATAATTAAAAAGAATATATTGTTTGCCATTCAGGTGAGCCTGACTGGTTTTGAGCATCTGTCCTTGTGCCTGAAGTGAGA----------------CCATCTCAGA-AGTCTTGCCAGCATCTTAGCTGACTAGGTTATATGCTGATTTTTA-TCCCACTCG--------GTAAGGTGGCACATGGCCACCTGTACAGTGCATATACATGCTTTTTATGCATTTTAAATAAATGTCTACTTTTTTTATTGAATGCTTAAAGGCTCAACATTTGCCAAAGCCAAGCCTGAGATTCCATGGACCTCGCTCACTCGGAAGGGGCTTGTTCGAGTGGTGTTTTTCCCGTTGTTCAGCAGCTGGTGGATTCAGGTTACCTCTCTCAGAATCTTTGTTTGGTTGCTGCTACTTTACCTCATGCAAGGTAACTCAAGAA--TGGAATAAGCTATAATGATTGCTTTTTTCT
s HiC_scaffold_1 114388856 576 - 233722169 TTTTAGGTAATGTTCCCTATGTGATGATGTACTTA---------GTAAAATCCTTCCTTCGTTATTCAGGCTTtggggcttttttctttt-tattagtattgtGTGGTTATGTAAATTACATGGTTTTCATATAATGGGAAAGGGAAATGAACTTGGAGActttt-----ataatttagaaaaatatgttAT-------------GAGCCTGACTGATTTTGAGCTCCTGTCCCAG-GACTGAGACAAGAAGTTTTTGTTTAATGCCCATCTAAAAGAGTTTT-------TTGTAACTGCACAAGTCACATGCTCATCTTTGCTCTCACTTGTTTTTAAGGTAATACTGCAAGTGGCTATCAGTATAGCGTATGCACAGGtgccttat--------------------tttgttttcttg--tgtttaaaGGCTCAACATTTGCCAAAGCCAAACCTGAAATTCCCTGGACATCTCTGACTCGGAAGGGACTTGTTCGAGttgttttttttccattgttCAGCAATTGGTGGATTCAGGTTACCTCTTTAAGAATCTTTGTTTGGCTGCTACTGCTTTACCTCATGCAAGGTAATTTAAAGAGTTGGTGCAAAGTGTGACAGTTTCattttgct

a score=63162
s chr3           103985749 3455 + 160039680 CAGTCACAGCGGTTGTGTTGTATCTCCTGATGCCTATTGTGAGCGCCAGTGAAGTGCTTGGACCCTTGTGCCTTATGCTACTCATGGGAACTGTCCACTGTCAGATTGTGTCGACTCAGATAACAAGGCCGTCAGGAAACAATGGAAATCGGAGAAGAAGGTAAGGTGA---------------------GCTTGCCTGGAGTGGTGT----------------------------------GCTTTCTTTTTTGT------TGCATATTTGACGAAATGACAG-------TTGTTTGATGCTGAGAACTTATCAGTGTTTAGTTTCATGTGACCTTTT-TTACATAGCACGGTAGGTTTAAAAGGAAAATTACTAC-TTTTCCTTAGCATAT--TTTTCAGTAATGGTTTTGAGAA-GCATTCTCTGGCTGGAATGTATTGGTTGGT-GTAGGGTACTTGTCTCTTATGAGCATGTGCAAGACCCTAGATAGGGTCAGTGTGCACCATCCCTGAAAAGAGAGAGAAGAGAACAGGGCAAAGTGGAAGGAGAAGGGAGATAgtgtggtgatacgtgcgtgcctttaatcccaatccttgggagacagaggcaggtagatctctgtgtgttcaaggccaacctggtctccgcagcgTCTCATCGAAAACCAATCAACCAAAACAAGAAAAACCCCAAACCACCACCACCACTAACAACAAAGCTCTGTAATGTTTGTGAAAATTCACTATGGGTAAAGGATTTCTGTACACTGGGTTAGAGCTACCAACATTTTGACCTCTTTTTCAAAACTGTGTAGTTGAGAcctggcctcatagtacaagctgtatcccagcccgtggaaagctaggacaggaggattgcttcagctttaagaacagtgtggtctatgtaaggagttccaggccaacatgacttacaaagaaagatcctgtctcaaaaaCAG--CGGCCCCAAGCCAAACTTAAGTAACAAGCACATGGTTGATTTCTCTGACTTACGTAGGTATTAATTCTGCTGAGTTTCTCTTGATGTGTGGTGTGTGGGTATTTGGAGTATTGAAGTTTTCTTTTCTTAGTAGGCTCAGTGTTTTATTTTCCAAAAGTGGTTTTCTTTTTCCTCAGATTATTTCTAGATTTGTTTACCCAGGCAACTAATAAATAAGACACTGGCATTTGGGTCAGTGAAGTTCAATACA-----------TTTATTTTTTAATGTT------------------------------------------------------------------ATTTTCAAAACACTGCTTTTAAATTGAGATTCTTTATAC-------------GTTTAGTATTTTCTAGAGAAACTGGTCACTGTACTGTGTCTCACTGGGATTTGTAGGCAGTGTCTATGACATACTCAGGTGAGTCTTTTAGCCGAGTAGAATGTCAGTGAAAGATGATAGGTGCAGTTACCGGTTGTTTCCTAATCAAATGTGCTATAGAGGTGGACAGCCAGTGTACGT-GTAGAGAATGTGATCTGTGTC--TGGTGCGGAAGGTGCCTGGAGAGGCTCAAGGCCACAC--ATTGAAACTCTTTTCTAGTCCTGTTCTGGACAGCCATTTT---TTTTCAATGGCTGATCAAAATAACAACACAGGACTTTGATCTTGAATCTGTTTTGTACTTAAATCAGAAATATCTTATAGTTGTTTGTCCTTTGTGTGTAAAGCTAACTGT--TTGATT-CAGGGAATAGTCTGTTAGCATAATTTTCTGAAGAGATACTATGGG----------AATATTCTGAATAATCTATAATAATTGAAATATTTTTTGTAGAAAATTACGAAAAACTGTAAATGGTGATGGGAGCCGAGACAATGGA---AATAACTCCCCTGATAAAGTCAGAGCAGTAGAAACTCTGGAGTCTGCATCCAGTGTTGGTGGTTTTTGGGGGACTCTCTTTGGCAACAGGTGGGAGTCTTATATTGGACTTTTTACTTGATTTTG--TTCCTCTTAGGATTTGC-AGGGTCTGTAACATAATTGGGTCATAGATGTAAATGTTGTGAGCTTAGTATTATAGCTCTGTGATTCTTAAGGGTCCTGGGAAGATGCACATACTGAAAATATTATCTCCAATATCTTTCATGTCATCTATAAAACCTCCTAATCTACTCTCAGCATTTATTGC--ATTGATTTTAATGCCTTTTAAAGGCCATAACTGCAAAAA---GCCCTCTG-----AAAAGTTATAGGCCTT---AGCTAACATTTTGACAGAAAGGAGAGTTTAAAAA--------AGATGGGGCTCTTAGAGCTAACACC-------CATGAGGAATGAAATTTGG-AAAGGAGCCTGGTGTTGGTGGGCCATAGGATAGACAAACAGATGGATTAAAGACAAGCCGTTACTCCTTTGTAATTGTGCAGGTCGTGAGAGTATCAATGTGCTGACTCAGGCACTTTTTTCCCCCTATATTAAGGATGGTGAATGAAAAAAATCAAACTCT----TTTTTTTTTT------------------------------------------------------------------------------------TTTTGAAGGTGAAGT------ACATGTTGTTCTAAAGATGCATTTCCTGTCCTTGG-TGAAGTGTTTGAG----TTATGCTGGATATTGTGTGGTCCTTGTTCTGGGTGATTATCCTAGTCAGACAGGGAGTAGTAGGAACGTG---------AGTCACAGGAAAGAAAACTCATTCTGGATTGTTGCATTCTGGAATGTAGCTTAGCAGACG------TTTACATAGCTTAGCAGTTGGAGTGCATTCTGGGGTAAAGTCG---TCTGGGCTTTGAAGCATAGTTAGTTTTTAAGACAGTAAATAGATGAGAGCAGGCACTGAAGTGTG---TTGATGGAGAGTGTGAGACAGGAATGGGCACTGCACCAGAGA------------------------------------------------------------GGTAAGCAGAGATGGAGTCA---TCTTTAAG----AGTGAGTGGATATTCTATTCTTGAATATCTTT------------------------------CCTTTTGAATTTTCTAGACTTTCAGAGTAATAGACTGTACTCACTAGAAGAAAGTGATTTCATGAAAGATATTGCTCTAATAAAAGTAATTAGTAA-CTTTTTTTCTTTTTTAAAAAATAGGATTAAAAGGGTGAAATTAGTATCTAACAAAGGTACTGAAACTGACAATGACTCAGGCTGTTTCCATCCTATCCTTAAGAAGAGACAGGGTCGACCCGAGATCAGAATGTGGCAAGCAAGAGAGAAAGCGAAGGTTTCGGATGGAGAAAAGTGCCGTAGGGTAAGATCTAGATGGGCCTAACAGGATCTTTTTTTGTCCTAGGTAAAAGTTTTCTGTTCTGAGACTGTGTTAGAGACACAAACTAGATACCTGTA-GGTGTAAATTTGTCAACAAACCGTAAGTAAGTAAAGCCACTGGTTATGAACAAGGAAAGACTGCAGGCAGAGTTGAACTTGTGCT--------CTAAGATGAGAACATACTGACCCTGCTGCTCAGCGGCCTGCGTGCTGGGTGCCAGGTCGGAAGGACACAGCAGTAGAGGGACCTTGTGTTTTCTAGAGGCAGGGATCAGGTTAGTAGGAGTTTGAGAAA----CTTCTAGGTCCA-GTGGAGATGGTTTGTTCTAT-GCCTAAAACTACACATTTGTTTTTTGTTTGTAGTTTTGAAACATTTTCTTCTTGAGCTGGC-ATA---TTTAATCTAATACTTATTAAGGTTT
s HiC_scaffold_1 114393599 3418 - 233722169 caGTTATAGCGATTGTGTTATATCTTATGATGCCTCTTGTGAATGTAAGTGAAATACTTGGACCCTTGTGCCTTATGCTACTCATGGGAACCGTCCACTGTCAGATTGTATCTACTCAGATAACAAGGCCATCAGGAAGCAATGGCAATCGGAGAAGAAGGTAAGATAAAAAACTGTATCTTAGTTTTGTATTTTCTGGAAGTGGTATTAAAGAGATTTGTATAATCTTTGATTAATTTAAAATCTTCCTCTTTGTatattcttcacttttttttaacttaaaatgctTTTTTCCTTAATACTAAAAAGTGTTAAGCTTTTAATCGCAGGTGAGATTTTGTTATTCAGTGCAGT-TTCTTCAAAGGAAAATCCCtatattattctttaaattttattttaagtaatgctttttaaaatgcattgctGGGCTGGAGATTGTaggtcagtggtaaagcacttgtaC------AGCATGTGTAAGGTTCTGGTT-------------------------------------------------------------------------------------------TCCAATTTTAAGCACT----gccagaagaagaaaaatttttct---ttaaaattcaggcTTTT------------------------AATCA-----------------------------------------------------AACTTTTTTGACAATTCATTACCCA-AAAGGATCTTGGTACCTTGGATTAGTGCTACCAGAATTTTA--CCTTtttccaaaaatgtgtaattga-------------------------------------------------------------------------------------taTGTAAGTAGTCTAA----------ACTTTTAA--------------TCAAAGTCAGTTTGACTctaa--caaattaaa------------------atttgtgtga--------------aattttatta-------tttgatattt-------------------ctttgaaGTACTC------------------TGTATTATCTtccaaaag-----ttatattttttcaaa--atatctaatTTTGGTTCCT----TAACCAATAACTAAAATTTTTCCATTTGATGTAATGAATTTCAAtagattctctctcttttctttttgtggtgttGGAATTGAGTCCAGGGCTTCTGCATGCCAGACCAGTGCTCTACCACTTAGCTGTACCCCAGCcccagttttcaaaatatttttttgaaa---agattCCTTGTAACCCGGTTAGATTGATTTAGTATTTTTTGAGGAAATAAGT-GCTGTGCAG-GACTCATTGATATTTTTG---------------------AGATACAGCATTTAAGTGCATAGGACATCAAT-AAAAATGACagctgcttttattttgtgttgccTGAATAAATATGCCGAAGGGGTAGCATTCTAATGTCTGTAGTTAAGTAAATGGCTTGTGCTAGTGGTGTTGAGTGTGCCTAAAAAGACTGTTGGTCACACAGATGACATTTTTTTTCTAGTATGTTTCTGGttagaaattctgtatctttagtGACTGAGTAAAATGATGGCATAGGATTTCCATTTAGAATCT-CTGTGTCCCAAATTCAGAAATTTTCTTGTATAACTTATCCTCAGTATGCGAAGTTAACTGTTCTTGATTACAGGGAATA-TCTGTTGGTATAATTTTCTGTAGGAA---TATGGGCAAAACAGAAAAGGTCTTAAATAATCTGAAGTTTATGAA--CTTTTTTGTAGAAAATTACGAAAAACTGTAAATGGTGATGGGAGCCGAGAAAATGGAAGTAATAACACTTCTGATAAAGTCCGAGGAATAGAAAATTTGGAATCTGCACCCATTGTTGGTGGTTTTTGGGGGACTCTCTTTGGCAACAGGTGGGAATTTTATATTGGAATATTTACTTGATGTTGTATTCACATCAGCGTTTACAAGGGTTTATGATACGATTGAACCACAGGAATGAGTAGCATAGGCGTGTTCTCATTGTGTTGTGATTTTTAAGGGTTCTAAAAAGATTTGCTTACTCCAGAT----CCTCCA----CTTTCAAGTTACCTTGTAAATCTAGTAATTAACCATTAAAGTttcattctgtttgattttaatgGTTTTTAGA-TTCAAGATTGCAAAAACATGGTCTCAAAGGGTAAATATTTTAAGCCTTATCAGCTAACATCTTGATGGAAAG--AACTTTAGAAAGTTCAACCATATGG------TAACGTGAGTACCAGGGTATCGTTAGGAATGTGATGCAGCACAGGGGCCTGGTATTGATGGACTCCTAGATGGAAAGACAAATGGATCAAGGGAAAA----TTTTACTTTGTAATGTTACAGGTTTTGGCAGCACTAATA---TGACtcaaatg-tttgttttgtttatgttcatgatggcagctt--aaaaataaaattttgcggttccttttttatggtactgggactcgaactcatgacctcctgcttgccagcaaggcgctgtgcagctgagctatatccctggccctgcagtTACTTTTGAAGATGAAGTGTGTTCACTTATTTTTCCAAagataaatttatatcttttggTTGAAGTGTTGAAGTTCTTTGTGCTGGGAATGGTG-AGTTGCTGTCCTGAATGATTTTTCAGTTAGGACAGGAAGATGAGGGCAGCCGGTGTAGGACAGTCACAGcagtaaaaa--tattatgaatgatTACAT--GGCCATGTCATTTAGCAAATGAAGGATATCCTGTGGGAAAGTAGCTGGCAGGAATGATAGAG--GAGTCGAGAGTTGTGCTTTGCAGCATGGCCATCGTTCACAAGGATGGACAGAAGTGAG-ACGCGCTGTCACGCGGCTTTAAGGGGCACTGCAAAGTAGGCGTTGCCACTGAGTTTGGGAGGAGAAGCAGGTAGGACTGTTACTGTTTCCTTACAAAACTACAAAGCAGTGCTGCTTCTTGGTAGACATGAATAGATTCACATTCTCTGAGTCTCCCTGGTTGACTATTCTCTCC---AATTCCCTTAGCGACTTAGACTAGGcctaaaaaaatgtaatttctgatttttcttgatTTCCAGAATAATATATTGGGCTTCTTAGAAGAAAGTGATTTCACG-AAGATGTTATCCTCTGAAAAGTAGTTAgtaaccttttctttcttttttgaaaataggaataaaaaggtaaaattactaACTGACAAAGGAACTGAAACTGACAATGATTCAAATTGTCTCCATCCTATCATTAAGAAGAGGCAGTCTCGGCCAGATTTTAGAATGTGGCAAAcaagagagaaagcaaaatttTCGGATGGAGAAAAGTGCCGTAGGGTAAGATTTAGATGGGTATTACAAAATCTTTTGCT-TCATATGTAGAATTTGTCTATCCTTAGACTTTGCTAGAGATATAAAACCAATACTAATGTGATACAAATTTGTC---------TTAATAAGTAAAACCACAGGTTATGAAAAAGAAAGTATCATGTGGAAGCTGGAACTTATTCTTAAGACACCTATGACTAGAACTTGTTAA-TGTGCTGTTAATC----------CAGTCTCCCAAGCT--ATGAACAGATTAGTG--------TCTTATTCCAGAGAAGGTGTGGT-AGTATATTAAGGGGTTGGGAAAATGTTTTCTGAGTTTAGGTGGAGATGCTCTATTCTGTGGTCTCAAGCTa-------acttttattttacattcttgAACTGTTTTCTTGTTCATTAGACTATAGCTTTCAGTCTAGTA-TCATCGAGCTTT

a score=30718
s chr3           103990666 752 + 160039680 aggtaggtactttctgtgaccatgacttttcagatgaggaaactgagcctca-agagagttaataaattggcccaaggctgcatggcgtgtaagcaga-----tgtgactcaggcgcagggct--gaccgagcctgcactgtcactgtgctcacactgcctcCGTGTTTGCGCTGCTGAGTTTGAGTTTCAAGTGCACAGGTTTTTTAACTTTGAAGTTTTTAAAAAATGTTGAGAATCAAGTAATATGTAGACTTG-TTAGTTTGGGTTTCATTTCTTTTCATCTCTTGGTAACTTTTCTGTGAATTTT----ACTTTTAAATGGGTAACTTCCTGGAGTGTTTTATGCTGTCCGTTGCGAGCTACTGTTGTTTTCTTTGTAGGAGGCTTATAGGCGTTTGGGTAATGGAATTTCAGACGATCTGTCAAGTGAGGAGGATGGTGAAGCACGGACACAGATGATATTATTGCGTAGGAGTGTGGAAGGGGCGTCAAGTGACAATGGTTATGAAGTTAAGAATAGAAGGTCAATACTTTCAAGGCACCTAAATTCTCAGGTAATTTTCATTTTTGTCTACAAAAG------CATGGAAGG---TAACCCCA-------AAAATACTGAGTAGTAGCAAGATATTT-ACGTCCTTTCCTCTTGTTTGTTGGTTTGA-TTTTGGCAGGTAAAGAAAACC---ACAAGGTGGTGTCATATTGTTCGGGATTCAGATAGTCTGGCTGAATCAGAGTTTGAATCAGCAGTCTTCAGCCAGGTAAAGCACCCT
s HiC_scaffold_1 114397766 713 - 233722169 aGATAGGTGTTTT-TATTATCAGTACTTTTCAGATGA---AACTGAGCCCCACAGAGATTTAGTAAATTT-CTCAAAGTTATATAGCTAGAAAGTAGAGGAGTCGTAATTTTGGCATAGAGTTTGAATGGAGTCTG--------------------------------------------TTTTAGCTTCAGattcttattttccttaattttgaatttt-----gaatattgAGA-TCAAGTAACATGTAGGTTTGCTTAGTTTTAG------------------CTTGGTagcttttgtttgatttttttaagcttttacaTATGCAGTTTACTAGGGTATTTTGGGGTGTCCCTGTGAAGGTATTGCTATTCTCTTTGTAGGAGGCCTACAGGCGTGTAGGTAATGGGGTTTCAGATGATCTGTCGAGCGAGGAAGATGGCGAGGCCCGGACACAGATGATATTGTTGCGAAGGAGTGTGGAAGGGGCCTCAAGTGACAATAGCTGTGAAATGAAGAATAGAAAATCAATACTTTCAAGGCACCTCAACTCTCAGgtaatttttgtttcagtttataaAAGGTGAATCATACAGTGATTTgacttaaattatttaatttattcagtAGTAATAAGGTACTTAACATGTCTTCATATTGtttcttggtttgatttttggCAGGTAAAGAAAACCTCTACAAGGTGGTGTCATATAGTACGGGACTCAGATAGCGTGGCTGAATCGGAATTTGAATCAGCAGCCTTCAGCCAGGTAAAGAATCCT

a score=10233
s chr3           103992495 447 + 160039680 ACTTGGCATATGGAGTTT---TATCTTATGTGGGGTTGATA-CTCTGAAGATAGACTTTAGCAGAGGCACCTCTCTGGAAGACAGGAACAGTAGAGTCTGATTGTAAGGTTACAGGGCGTA---TTTGAACACATTTGAGTTAGGTGAGCA-------TGGTGGTGTGGTTTTCCTTTGTTTTACTCACA-GGCAACTGGGGTCGTGGAAAAAGTTTCATATTTCTGTTTGTACTGCTGGGGTATTGCACTGTCTCTGGTTTTCTGTGACTGGTTATCTTTGAGCATGTTTGGGCTGGGACCTGGACAAAACTAGCTCTTTTGTCAAGCT--------------------CACAGTGTCTCA---GGCTTAGCCAGGCCATCTGGG-CAGACCCTCAGGTGTG--TCCAGGAATCATTCAGCACGTAGCACACCTAACTTGAATAGTTGAAT-GTTTTGTAGTAGCTTCTTAGAGGGATTGGTTTTTTT
s HiC_scaffold_1 114398793 468 - 233722169 ACTTGGCGTATGGAGTTTAAATATCATAAGTGGGGTGGATATCACTGAGAGGGGACCTTTGAAAG----------TGGAAG-CAGTCACAGTA---TCTCATCTTAAAAGCTAAGGGGGTAAATCTGAAATGTAATTCAG--AGGTGAGCAGAGTAGATGGTGATGTGGTTTAATTTTGTTTGATTGACAAGGCAGTTGGAGTCATGGAAAAACTTTGACATTTATGTCTGTACTGCAGGGGAACTGCATTGTCTGTGCTTCTGTTTG-CTGATTATCCTTTAACATGAT---GCTGGGCCTTGCTCCTCACTAGATCTGGAGTCAGGATTATGCCGTTTAAGTAGGGGACACTGTGTTTCAAATGGCTCAGCCAAGCTAACTGAGTCAAAGCTCTGGATGTGCTTATAGGAATTGTTCCCATATCAGAACACAGAG-TAGAACAACCCCATGGCTTGGTGATAATGTCTTAGagggaattattttatt

a score=22610
s chr3           103993486 442 + 160039680 gcataTCAGGGTCACTGGAGCTTGATATTTAAACATTTCAACATTCATTATCATGTTTATTGTATGAAACCTTGGGACTTAACAATTACATGATGATTAACTTATGAAA-GCTTGCCAGCAAATACCATGACTA------TTTGGTTTTGTGTTTTATGTATAATTGT-TATGTGTTTTCTTCCTTTTA---TTTTATTTTAAAGGGTTCTAGATCTGGTATGAGTGGTGGCTCTCGGAGCCTTAACTTGTCAAGAAGAGACTCAGAAAGCACCCGACATGACTCCGAGACTGAGGATATGTTATGGGATGACCTTCTCCATGGTCCAGAGTGCCGGTCATCTGTCACCAGTGACAGTGAGGGGGCTCATGTAAATACCATTCATTCAGGGACCAAACGTGACCCCAAAGAAGATGTTTTTCAGCAGGTATATGAAGACAGTGATTAAAATAG
s HiC_scaffold_1 114399337 441 - 233722169 GCTTGCTAGGGTCATCAgagtttaacatttaaatatt--aaagtgtAGTATGAT---------ATGAAACCT-GTGAGTAAATGACAACATGGTGTTCAACTTGTGACCCTTTTGCTAGTCATTGCTATAGAtaacttgttttaattttatttcagatatataattaaagatgaatgaaaaacaatttaagattttcctttaaaGGGCTCTAGATCTGGCATGAGTGGTGGCTCTCGAAGCCTCAACATGTCAAGAAGAGACTCAGAAAGCACTCGCCATGACTCGGAGACTGAGGATATGTTATGGGATGACCTGCTCCATGGCCCAGAGTGCCGGTCGTCTGTCACCAGCGACAGTGAGGGGGCCCATGTGAATACCCTACATTCAGGGGCCAAACGTGACCCCAAAGAAGATGTTTTCCAGCAGGTCTGTGAAGGAAATGATCAAAACAG

a score=63226
s chr3           103996444 2941 + 160039680 TATAAGTGGTTCTGAGTGATGGATGGGCTTTGAGATAGAGAATGAACGTAGGATGAAACTGAACACTGG-------AGTCTGGGAGTGGGACAGAAGG---AGAGAAGAACTAGTTGAGGAAAGATGGAGTGGACGGG---AACAGTTTTATATTTTTCTTTCTCCCCAGAACCATTTATTCTGGCTTCAGAATTCAAGTCCTGCCTCTGAGCGAGTTAGTGCGATAATCTGGGAAGGAAACGAGTGCAAAAAGATGGACATGTCTGTGTTGGAGATAAGCGGCATCATCATGAGCAGGGTAAGAGCATGCCGCAGGCTTCAGAGCTGAGTGGGGTGAGAGCCTTGCTGCAGACCTATTCATCAGTGAAGACTTGTTTACCAGCAGCTTGaatgcctccatgaaatcag-gctgcagataa----gcctgtagggcattttcttaattagtgattaatgggggagagcccagctcattgtgagggagaccgtgtgctggtggtcctggattctgtaacaacacaggctgagtaagctatgaggaacaagccagtaaacagcactcctccatggcctctgcctccaggtgtttctgtcctgacttcccttagtgatgaactgttgttacctggaagtgttagctgcagttagctgccttctcctccccaagttgctttaggtcatggtgcttcatcacagcaaaagtgaccctgactaagacaGCTTTATACTTTGTACCATCAGAT---GCTCAGGTGTGCCCTGCAGCCATTCCTTAGACTGCAT---CCTAGTTTGTAGCAAGTCGGAGGTCTGTTCACATGCTTCCCTGCTTTGGTGCTGGACATTGAATCCAGGGC-------------------------TCCCACATGCTTAGCCACGCCTCGTCTTTTTGT---CTTCTTATTTGTATTTGTTTTAAGATTTATCTTTAATATTGTAAGTGGTATTTGATAAATACTTTTGGTAACTCCCTTTTTCTATG-TAGTACTGATGGAGATTTTCAATTGGGTTGCAGGTCAATGCATACGAGCAAGGTGTTGGCTATCAGATGCTGGGGAATGCAGTCACCGTTGGCTTAGCACTTTTCCCATTTTTATATCGACTTTTCCGAGAGAAGAGCTTTGACCAACTAAAGTCCATCTCAGCAGAGGAGGTTCTGACCCTCTTCTGTGGTGCGCCACCCGTCACACCTGTTGTTATTTTGTCTATAATTAATTTTATTGAAAGATTGTGTCTTACGTGGATGTTTTTTTTCATGATGTGTGTGGCAGAGAGAACATATAAGCAGGTGAGTGGACAGGCAGCCTTTGTCACCTCTGCATCTGTCTGCTGCTCTGTTGAATTG-TTTAGTTCCTTTCTCTGGGAGACTTGTGCATTTAATGCTCATGTGGGTGACTAATTG--AACAACACATTATAATCTGAAATCTTTAAAAATATTTAAATGTTCTTCCTGTTCTTAGGCAGTCTCATATGTGTATCATTCTGACCAGTGCACCCCTGTCACCCTCTCCTACCTGTCCTCCCGCTCCTGCAGAACCCTCTCTTCTCATCAGGTCTCCTTTCTGTTTTATGTTTTTTCTAAATGACCCGTGAGATGGCTTGCATGAGTTTGGGTATGGGGATATTTATTAGCTGCAGCAAGACAACCCTGTCCACCACAGAGGAAGAGCCACCCATCCCTGGGCTTCATCCTGTGCTGGTCTTATGCAGCCATGAGTGCAGCAGCTATGTCATCTGAAAGTTTTCTGCAGGAGCAAGTGTTTCTGTAGAAACAAGTGGTGTAGGTTGCCAACTGCT-CACCATCAGGACTTCGTATTTTATCCGTAGCATATATAGTGGCAAGGTAATAATGTTTTTGTAATAAAAAGGCCGAGTAG--AGGAGTGGCCTGAAGTCTGGTGAGTTATGGGCTGAGGATTTA------CTATCTTGGGGATGTGCTACAAGGAATGTACTTTTTGAATGGAAACTTAATTCTAGAGTCAGCCAGAA---TTACGTGTAAACATTAGAGGGTGTGATGCTGAGGACTCATTCAAAGTTCCCAAGGC-TACTCCTTGCGTGCATTGAGAATGTG--------CCATGT---TTGGAAGAAGTGTTCACTGTGGGTG----GACTTTGACA-----TGAACACTGCTGTTCTGAGGAACCACTGGATAAGATGTTGATTCTGTTTAACACTTTAAATATCCCAGGAATACTATCAATGGTTTTTGAACATGTACCTAGACACATGTACATTTTATT----TTGTGATGTTTTAATTTCCTTTAGAGATTTTTATTTGCAAAACTCTTCAGCCATATTACTTCTGCCAGGAAGGCCAGGAAATATGAAATACCTCATTTCAGACTTAAAAAGGTGGAGAACATTAAAATATGGTTATCCCTGCGCTCCTATCTAAAGGTGAGCTGTTT-TGATTAACTCTAGTATGTTTGTAGGGCTATGGAAAGCATGCGTGTTGATGATTCTGGCTAGAGTT--------------GCAGAGTGGCGGGACCTGTGGTCACTGGGAAATGATTCAGCGTCTGAGCAGACTTGTTGAATGCCATGCAGGACATGGTGTA-CAGAAAAGATAGTAGTGGCTCATGTGTAAAGGGAGGGGGGAAGCT---GTTGCCTAGGACAGAAACCTTTGGATTGAATGCTTTTCTGACT---GGGAAAGATCCTAGCTGAAAATATGTTAATGAATCAACCTCTTAATTTGAAAAT-TATGGCTCTTAGTTTTTCAGATTG---ATACCTAAAATATGTTAAAATGCTGCGTCAGAGATATCTCACACAAGTTTATTTTCACATGAATGTACTGCAACTCAGAGCT-AATAGTATAAAG----TTGCTATCT--GACCATATC-CTAAAACATTAACATATGTCTTCCTCCGCAGAGGCGGGGTCCACAGCGCTCAGTGGACGTGGTTGTGTCCTCCGTCTTCTTACTGACACTTTCAATTGCTTTCATTTGTTGTGCACAGGT-AAAGTTTCACATCTCTTTTAATGGAA
s HiC_scaffold_1 114403033 2608 - 233722169 TAGAAATGGTTCTGC---AATGATGAGCTTTGTATGAGAGAATAAATT---GATGAAACTGAACATTGGCTGATACAGCCTGGGAGCCGGacaaaagagaaaggggaaagctaatggagggaggaaggaaggagtgggTAAAGcagctttatatttttct----ctccaGAACCATTTATTCTGGCTTCAGAACTCAAGTCCTGCCTCTGATCGAGTTAGTGCAATAATCTGGGAAGGAAATGaatgcaaaaagatggacatGTCTGTATTGGAAATAAGTGGTATCATCATGAGCAGGGTAAGATC---TAATAAGTtccagatttaa---------------------aaacaaatacag----------ttaATGATCAGGAGTTACTATGTAACAATGTACTCGGTGATTAAAACAATATtgactgt---gctttttttt-------------ttgtgcagagcc--------------aggaatcaaattcagg--gccttg-------------cTCATGCTAAGTAATCATt------cctacccctgagctacattcct------------------agtctTACAATTCTGTTTT-------TGAAACACAgacatatgtttaaaatttt--------ttagccACAGTCTTT-----ATTTGgcagtaggttttttt---------------------------ttaaatttgctgcACATGGTCTGTTAGCAGATCTTGTTCAGGTAT-------AAATATTCTTTACCTTAGTTGGGCATGGTCTGTAATAAATCAGAAGTCTGTAGGTATTTTTTCCTCCCTTGAGGTTGGGGATTGAAGGTATGACCCTGTGCATACTGAGGATATACTTATCACAGACACATAGCCTCAGCTCAAACTTgcgtgtcatttttatttttactttatttaaaatgtgttcttaatattttaaatagcatTC------------TCATATCTCCATTGTGCAATAATTTTAattctggaaattttaaattaattcccAGGTCAATGCATACCAGCAAGGAGTAGGTTATCAGATGCTGGGAAATGTTGTCACCATTGGAttagcattttttccttttttacatcgACTTTTCCGAGAGAAGAGCTTTGACCAGCTAAAGTCCATTTCTGCTGAGGAGATCTTGACTCTGTTTTGTGGGGCCCCACCTGTTACacctattattattttgtctataattaatttttttgaaagattaTGTCTTACTTGGATGTTTTTTTTTATGATGTGTGTGGCAGAGAGAACGTATAAACAGGTCAGTGgacaaataa-----gtaaatttt---tttttatgctATCCCATTGAGTTGCTTTTGTTCTCTTGATTTTGGTATTTGTGGGCTTAACATTTGTGTTACATTCTATTTACAAGTAATATGTTGTAATCTGAAATTTT------------------------------------------------------------------------------------------------------GCTGAACCCC-------------------------GTGTATGG-------AAATAACCTGT----TTAGTTACCTAAGT--AGGTA-ACTAATGCTGAGTATCTGTA------------------CCTCAGTG-----------------TGGCCTTAGGTTTTTATTCGTATCATA----------TGTAGCAG-------GCCTCAAAAT-----------GATAATGTTTTTGTGAAAAAAAGAGCTAAgcctaggagactgaggcaaaagaaggatcacaaatttga-----ggccagcctagttACATA-----AATGACTTGG--------GGGGTGGGTCGtgagaaatttattaaaatttgatgAGTTCTAGATTGATGACTCAATATATTTATATTCGTGATATGC-ATAAGAAATGTGATTTT-GTATGGAAAAGTAATTCGAAACTAAGCTAGAAGAATCATGTGTAAACATTTGAGTTTGTGCAATTGAGGATTCACAAAAAGTATCCAAAGTGTATTCCGTACAACTGTCAAGAGTATGATATCATATCATGTGCTTTGGAAGCAGTG--------GGGTAATGAGATGTTAACAGATTGTTTTCACTGTCCATCTTAGTGATTACtg-ataagaatttcattttttttaacatttagaaaatCCTAGGGATACTGTTGATAAGTTGT----ATGAACACAAAGACTAACATATTTTTTTCTCGTTGTGATTTTTTAACCTTCTTTAGagatttttatttgcaaaactcTTCAGTCATATTACTTCTgccagaaaagcaaagaaatatgaaatacctCATTTCAGACTTAAAAAGGTAGAGAACATTAAAATATGGCTGTCACTGCGTTCCTACCTAAAGGTGAGTTTTATATGATTGACACTA---------------TGTAGAGAGTGTACTCATTAA-GATTGTAAC---AGTTTGATTACCCACTGGGCAGGGTGGT------TCTAGGTAGTGGAGATTACATCAGTGGCTGA-TAGACTTGTAGG-CACCATATTGGATGTGATATATCTGCAAAACTGGCAgggagt--tttaaaaatacttagaaaaaatttaaatttcataggGCAGAGCAataagtattacat---tttttgactTTTAGATAATAATGTAGCTGAAAATACAT-AATGAGTAAACTTCTCAGTTTGGAAGGGCATGAATTTCAGTGCTGCAGGTTGCTAATGCCGGAAATATGTCTAAATTCCGTGTCTGAAAC----TGTAAACATCTATTTTTACATTAATGTAGTAAAATTCAGAGTTTAATGATGTGAGGGCTGTTGCTATCTCTGACGGTATAACTAGAATGTTAACAtctgtgtctctctgcagagaCGAGGTCCACAGCGATCAGTTGACGTGGTTGTATCTTCAGTCTTCTTACTGACACTTTCAATTGCTTTCATTTGTTGTGCCCAGGTAAAAGTTGCATGTGTGTCTCAGTGGAA

a score=38902
s chr3           104002349 3614 + 160039680 [encoded data, 4760 characters]
s HiC_scaffold_1 114408040 4406 - 233722169 [encoded data, 4760 characters]

a score=23856
s chr3           104006824 1097 + 160039680 ATCCGCTAAGCTTTCTGTGTGATGGCTTTTATTCGCAA-GTTTTTTATAATCTTTAATAAAACAGTAAGTGGATTTTTAGTTTGTAGTCATATGAATATACATCCAAATCCCACCTATTTGTCTCCTAGCTAACTGGTGTTTTGGGGTGATTTTCTTTTCTTAGCTGTGGAAAATTAAGTCCTGAGCTGAGATGTGTGCCTGGACT-CTGCTGGCTGGTGTCACTGCTCCCCCACTGAGGACAAAGATGGCCCACAGAAACCAGTGGCCCCACCTGCA--GGCTCACATGCATCAGTCTCTCCACTCAGCCCCGTCTAACGAATGGAGCTTCGGCACCTCCTTTCCCCGGGGCCTG----TGTTAAAAACCTGCACTTTCATGGTTCTC-AAGCAACGTGAATAGTCAGCAAACTAAAGCCTGCCTCACAAAGACTCGGACTATTCCTGAGTCAGGACATTTATCCTGGAGCCTCCAGTACTGTGCTAGTTATACTTACTGTAAATAGTCTCT-TGGGTAACCATGGTAGGTGCCCGAAGCATGACGCAACTGTC-TCTTATTGGAAATATTTAAATGCATTACTTTTCTACTATAGTCTATG-GATTGGGGACTTCTCTATCAGAAGGAGAGAAACTATTTTAGGTTGAATCCAAATA----AAAGAACTTTACTAGAGAATTTCAGTTTCTAGGCTTTTTTTACAGTGAGGGTGGAGGAATGCAATAACTTCAAACAGAATTT--TGTTTATTTTTGGAGGG----------AATCTCCTTTAGAGTTAAGCCT-GTAAGTACATTGTTGGTGAGCCATGCATG-------CTCA-----------------------------TGAGTTGGCAGCATGCCCATCCGATGGCACGGCCTC--TGGTGGTTTGCCTGCTGTGCAGTGGCGGGTATCCAGCCTCTAGTGC-ACTTGAGGTCCTCAGTGTCTAACGATGGTTCATACTGTGCCGC------GGATGTAGCCTTACTTGTTAGTGACCCA------GCATGCACTCGTG-------GTTAATGGAGACATCGGCATTCCTGCTCACCAGGTTCCCTACCTTGAAGAATTTCTTGAGGAAGACTGGAAGCATGAACACCTTAATGGTAAGATTTTGTAAACTTGGTTATCTCATGTACGACAGTTAT
s HiC_scaffold_1 114412381 1112 - 233722169 ATCCTAGaagtttt-----taatgatttttcttcatgatattctttgtttttcttacgTAGAGAGT--------TTTTGGTTCATGGTAA-GTGAATGTACCTTTAACTGCTACCTTCTTGTCTTAAAAGTAACT----TTTTGGTGAA------TTTTCTTAGCTGTGGAAAATTAAGTCATAAACTGAGCCACGTGCCTGGATTCCTGCCCCGCTGCATCAGTGCT-GACCGCAAAGGAAGGAGCTGGCCT---GGACCGCGTGAGCCCACCTGCCATGACCC---TGCA-CAGGTGCTCC---CAGCCCT-TCCAGAGAGT----TCTCAGAA---ACTTTCTCAACGGGCTGTGCATGTGAAAAACC----------TGGTTATCAAAACAGTATGCATAG-CAGCAGACTAAAGACTGTTACAGGAATACAAGGACAATTTTC---TAAGGAAGCTTATTCTTGCCACGTTAGTATTGTGACAGTTACATGTTCTGGAAATAGTCTTTCTGGGTAAATACGGTAGATTTCCAAAGCATGACACAAATATCTTTTTACTGgaagtatggaaat-cagtacttTTCTATTACAGTCTATGAAATTGGAGATTTCTCTATC--AAAGAGTCAAACTA-TTTAGgttgactcaaaataaaacaaaaaactttacTGGAGAGTGTCACTTTCTaggctttttt---attttggctgaagggaaaatattttttaaactgtcaTTTTCTGTTCAGCTGTGGAAAAATCTTTAATTAGCCTGATTTTGAGTTAAGCCTAATAAGCACA--GTT-GTGAGTCATGCATATAATATCCTCAGTAATTACCCAGAGAAATTTAAGTGTATGTGTATTTACTTTATGTCTGTCATACAACATGGTTTCCATGTTGTTTTACTTGTCATGCAACTTAATGTATGCAATCCTTAGTACAATTTCAGGTCCTCAGTGTCT-ATAATTATCCGAGCCATAAGGCCTTTCATGATGTAGGTTCTCTTATCAGCATCTCATATTACGTACGCATACATGTACATATGCTAATGAAAACTCCAGCATTCTTGATCA----GTTACCTGCTTTGAACAACTTCTTGAGGcaaattaaaagcctgagcatTTTAATGATAAGATTTGTGAAGCCTGGTTATTACTTATAAAGCATGTAT

a score=207886
s chr3           104009202 10676 + 160039680 [encoded data, 12368 characters]
s HiC_scaffold_1 114414839 11430 - 233722169 [encoded data, 12368 characters]

a score=54307
s chr3           104019897 2461 + 160039680 GTCTTTCTAATAACTGTAACGGGTGGCAGGGCCAGAGGCTTCTGCCTCTG----------TAGGGATCTAAGTAG---------------AAAACCTCCCTGGGCTTATTATGTCTTAGAAGAAAATGTAAAATAAAAGTCGTTTTATCCTG-CTGTCTCAGGACCTGTACTAAGATGGAAG-AGATTTGATTTACCGACCCATCGGCCCT----------------------GCACTGACTGCTCTTCTGGACA-----CAGAGAAGC---------------CATCAGGCTCTGAACCCTGG------------CTAGCTGGGG------AAGCACAATGGTG-GCA----------------TGCGGCTGCAGAAACCCGTTTCCTGTG---TAAGGGGTTTCTGCATTCCCTCTAAAGCAGTTCCTTCTAGAACTTTCCAGCCTAGAGGCAGAAGCAGAGGTTGCAAACAAAGGTCAACTCACGTGAATCCTGCCGTCTTTGATGGCGGGCCCGTCCTCGGCCAGGCGCAGGATGAACAGCCCCATGTTGTACTCCTTCCCTCCGCGGAGGCTGAACCCAAAGCCTCGAGGGCCTCTCTCCAGCTCCACAGGGTAACAGCCAAGGCTCTG-GGGGAAGGAAGCATCATGACAGAGTGCTCTCACGCACTGCTTCTGATGTGTCCTGAAGAGAATCT-GCTTTATAGCTGAGGGAA--ATAGTGTATACTCTTGATACAGTTCTAAGTGGCAAGAAAGGAATGCTAGCTGGGGCTGC-TACTTAACTGTCATAAAT-TCAAATAGATTCATTTGAAGATTATGCCTTCTTATAGTCAGTCAATGTTCAGCAGAACAATTAAGAGAACAGAATTTTTGAAAGTACCCACTTT---ACGGAGATTT---TTTACAAATTTTCCTGAAAAGCAAGCAAAAGCTCCCCCCATTTAATTAGCTACAACTATGCACTTGTGCATAC------------TTAACCTCGATTCTGA----------CTTCTCTGTTTGTATGGTGTAGTGAATGACAACC--ACATT------ACCAGTCCTGTAAAAATTAGTAATTTTGGAAGCAAATGTATCC--GAACAGATTCGCAACAAAA--CACCAATGTTCAGTGATTCAGCAACC---CAAAAAATCAACAT--CAGG---GTGTCTGTGTTTACCTGATTGTGCCGACTGCCCACAACTGAAATCACTGCAGTGTCAGGCTGTGCAAGGTGCTTATGGTCAGACCAGGAATGTCTGTAAGAACTGCAGACATCTCTCCCAATTTCACCTTCTAGGGCAATTCTG--TGAGAGAAACCAAGTTATGTTCTGCACTGAGAAAATGAGAAACAGTCTG--AAAAGAAAAGCAGATCAACTCCTCT-----CAAGGCTGAGCCTTACCATCCTCTATCCTGACAAGCTGCTGTA---AACAGACTATCTCTAGA-------ACCCGAATTGCTAGGAAAAAAGACTGCTCCTTCTCTCCAGGGTCGGTTAAACACTGAACCCCATCCCCTTCCTTCAGTGGAATTTAATGGAGTTGCTCTCAAAGAAAGCTGCACTCAAAAATAACTGAACT-GGGGGCAGACACTGTGACCTTGTCACCATGAGAAATGGACCTTCCGAAGCCCCAAGGCCTGGGAAGATGCTGAATTTCTGGGAACCTAGTTTTCTTTTATGAATAATATTTTTAACAGAGGAAAAATATCTTCAAATTACTGCCCAAGTGTAAGGCAGTTTGAGAAGACTGACTCAGGTGGGGCTGGGCTCCCCTACTAAAGT----CTTACCAGAGAAGTAGGCTAGGTGCTGCCTCAGGGCTGCCTATCACCTTTGTGCCTAGCATGGAGGCTGGGAAGTGGGGTGAGGGTGTGAAAGGGCGGCAGGCACTGGGAAGGACCGCGAGGATGAGATACCCAACAGCTTTCTTCCAGACTTGGCTATCTGGCTTGTGCATTACTGCCTGGGAGTGGGATAGTGAAAAGCAGGAAGATGAGAA-AACCCAAAACC--TGAGAATAGCCACACCTGTCCCCAGGTATGTGGTTGGCTTGTGCTTGTCCCATGGGCCTGTGCTGTAGTGCTGGGCTCTGCCTGGCTGAGTTTGTTCCTGATGGTGGACCATGATGCTCTGTTTAAGTGAAAAAACAACAGAAATCAGAATCTGTACATGAAAACATGAAGACCAAGTGGATCT--TAAAGTAAACAACAGTGATGGTTACAGTTCCCATCTTTAGGGCTTCCACAGAACTGCACT--GTTATTTTTTGGAATTGGAACAGTGATACTCTCCTCCTCTGGCTTTAAGTAACATTTATGTTTTAAGAGAACA-GCAGCCATTTTTTATTTCACATTTTCACCCCTGTCTTTTCCATACCGTGGAAACC-AGAACCACACACGTCAGTCATATCTGTGTAGAGGACAGAGCTCGAG---------GCTACTCAGT-TCTAGGTCTCCAGAGCACAGAC-------------GGTTTTCCTTCCTGACAGTTCTAAGTCTCAGG-ATGTTGGAGCAC-GAGGCCACCCTGCAAACTGTACAC---ATCTGGAACTTGCATTTC--TACAGAGGAAGTTATTCTGCCTGGCACTTAGCATCAAAGATCACAAAGTCATCCAGAGAGTtg
s HiC_scaffold_1 114427831 2420 - 233722169 GTCCTTCAAACAGTAATGAAGGTGGGGAGACTCAGAA-CTTTTACCTCTGGGTACTTCTATGGGCAGctaagagggggaaaaaaaaaaaaagaaaaaaccagggcttattttttcttggaagaaactaaagatT-----CTGTATTATCCTGGCTTTTTCAAGACTt--aataagatgaaaatatattttatttattaatccaTTTACCCTCAGATGTTGGCTGTACAAGTAAGAAATGACTTTGCTTTTTGACTGAGATCAGAAAGGCAATGCAGTGCAGCTGCAGTGGGTCCAGTTCGCTGGTGGGAAGACGGCCTCCCTGGGGTTCAGGGAGCACAGAGATGAGCAGGTACCTCTTAGGCTTTGCAGTGGAAAGGTTCTGTTTCTTAGGATTTAGAAGCTTTCTGCATTTCTTCTAAATCAATTATCTGCACAAGTTCCTGGTCTAAAGCTGGAG--------CGCAGACAGAAGCCA-CTTACGTGAATCCTGCCGTCTTTGAGGGCAGGGCCGTCCTCGGCCAGGCGGAGGATGAACAGCCCCATGTTGTACTCCTTCCCACCCCGCAGGCTGAACCCGAAGCCCCGGGGGCCGCGCTCCAGCTCCACTGGGTAGCAGCCCAGGCTCTGCAAGGAGAGAAGAGTTACAGAAGTAAGTTCTCACAGGACGCT--GAGTACATCCTGAGGAAAGACTAGCTATACACTAGCAGGAAGGATTCTGTGCATTCAGTATGCACTTCT-----GTACCACAGGAATGCAAGTTTGGGTAGAGTGGTTAATTTTTACCAATACCCCCTAGG-----CTAAAGATTATATATT-TCCTAGTTGGTTAATGTACAGTAG-------ATGGaaacagaattttataaaatgctttctttaaaaaggagATCTGACTATGAAAACT--------GAACAAGCAGAAGTCCAC----TTTAATTAGCTAC-ATTATGTGCTTGTAAGTACTCCACGAAGGGGTCAATTTTGTTCCTGGtgtacttttccttccttctttgtatCCTCTCATGAAAGCTAACCAAACATTGAACACACAACAGGTGTGCATGTTACtaattttggaaataaattgACCTGAGAGCTTATTTGCAATAAAAACCACTCATG-TCAGTGATACAGCAACCCCTCGAAGTCTCAGTCTGCCAGGGAAGAGTGCTGGGTTACCTGATGGTGCCGACTGCCCACCACTGAACTCACAGCAGTGTCCGGCTGTGGGAGGTGCTTGTGGTCAGACCATGAATGTCTGTAAGAGCTGGAAGTGTCCTTTCCCATTTCACCTTCCAGGGCAGTTCTGCATGAGAAAAATCAAGTCATTCTCtcaactaagaaaatga-aaaccttttgaaaaaaaaaaagcagattaatttcttttcttataaaaccAATCCTTACTCTTCTCCCT-TTGAGAAACTGCTGGAAAGAATACACTAAC-CTAGAGACAGGGAGCTGCATAGCTTGAAA-------TTGTCAACATCCCC-GTGTCTTTAAAATAGTG---------------TCTCAGTGCAGTTTACAG---------CCAGAAAAACTGGCACTCAAAG--AACTGAGCCAGAGGGCAGATAAAGTGCTCTTGTCACAGTGAAAAATGACTCTCCTGGAACACCAAA----AGGAAGatgctgaatttct-agaatctagTTTTTGTCTCGCACTAATGTTTTCAGCAGAGGA---------------------------------------GAGAAATACGATTC-TGTGGTCTGGGGCTTCCCTACTGCGTTGCAACTGTCCGGTCAGGCAGCCGGA----------AGGACTGC--------------------------GCTGT---GTGGGGTGGGGG-------ACACGCCAGGCACAGGGA---GCTGAGAGCAGAAAGCACAGAAGTGCTCTTCT---GACATTAGTGGCTGTCTTCCGCATAACT-------AGT------GTCaagagcagagagaagaaaacaacccaaagccAATGAAAACAGTCCCACCTGTCCCCAGGTATATGGTTGGCCTGTGCCTGTCCCATGGGTCTGTGCTGCAATGCTGGACTCTGCCTGGCGGAGTTTGTTCCAGATGGTGGGCCATGGTGCTCTATTCAAATGaggaaacaacagaaatgagaatt--CACCCAGAACTGTGAAGGCCAAGCAGATCTAGGAAAGTGAAACATAATGG----------------------------CGCAGGACTGTGCTCAGCTGT---------CTGGGACAGTAA----------CTCTG-------------TTCgtgtttcaaaagaaaaggcaTCTACCCTTTCTTCCCCACTTTCCTCCTCGTTTTGGTCAC-CCATGCAATCTGAGAGCCAGAAATG-CAGTTATATTTATCTAGGAGACAGAGCTCAGGCACAATCTTGTAGCCCATTCTCTTGGTTTCCAGACCACATGCCTCTTAACTGGTAAGCTATTATAGGTGACAGTGACAGGCTTTGGGAATGCTGGAATATAAAGGCCAGTTTGCAGGTAACCCACACAACTTTGAACCTACTTTTTAAAACAGGGACAGCTATTTTGCCTGACACTGAG---CAAAGATTATAAAATCATCCTGAGTGCTG

a score=26093
s chr3           104023359 2652 + 160039680 TGGAAT--AAGGGCTCAGGAAGGAACCGT-GGTGTTTTA--GTGGAGGTAGAGATGGCTGCAGCAGTTATGGA-AACACTC--ACAGCATAGAGCCAAATGG--TATGTTAATACTCATTGATGGAGCAAGTAATTCTACTTCCAGAAGTTCCTATAAAATGCTGTTTTATAGGATACACAT---AGAAATGTGTATCACA--------GGCCTT-----------TTTTTGATATTCAG-AGCTGGGAGCAATGTGG-----------GAAGCAGACAGGTAAGACGAGGTGAACACCCA--TGGGAAACTACCTAGCTA---------------------------CAATGTGGATATACTGTAAATGTACAGAATGCTTTAAGAACaacgcacaaaacagcaaaaacaataataaatgggtcagtcttcactgacattcaaatgtttgtgcatcaaagggtgagtaataagaaagtgtgaagacaaatgtaggctgggacacaaacatatgaaagctgcacacctgaaaaagatct-agcgtc-agaataagtaaagag--------aacctataatacaa---cataaggcaagtgaaatatg--------atttgaatagccatttctccaaagcccaggaaaagatgctaaattaacattactagttgtcagtgacatatgaagccacagcatagtgaaataccacttcacatc-attagaaaggccagtatgagaaaacaatc----aaccagaaaataagtggtgtggaggatctgacaaaactggacgcctccctcatactcctggcgggtgagagtataagatggtgtagctg--gctaa-aggaatcatttggcaaccctttaaaaagccaaacatgagagtacacaacatgacctgacaattctaactttaggaaaaactcaa-gagaaatgaaatcatgcatt-gcaggaaaatatgtacagtaat--------cgatgaaattcacaa---taaaaagaaggaa------caaatgtctatcaaatgattaattggaaagtaaaaggatgtatatgcaatatggactttatattattatgtatacaaggaatgat----------------aaagattacagtgaacttgaaccttgaatg---tttgctaga-gaaagaagcacaatggacacggttgcatactacatgattccactaaagtaaaacgtc-taagaatgcaccgaggcaaacagcagatgtgtggctgctgagggacagcattagaagaaaatgggaagtaattgttaatgactatggggtttcttttgggagctgataaaatgtgaaattagcggtgatggtt-----------agacaaccttgtggataaacttaaaCAAAAGAAAAATGATACCTCCCCCAGTAGCC--CTCTAGAACAGCATGGACAGCTGTTGTGATGAGTTTTATAACATGTGAGTTTATCTTAGTTAAAAGAAAAAAGGAGAGAT------GACATGAGGAATCGTAGAATCTTTGATTGAATCCTGG-----------------AAAACAAAACAAATCCCATAGTTATGAGACTAGGCCCTAGAATAGCAATCTATAACATAGAACCATCCACCTATACAGCTGCAAGAGTAAGGACAATACACACTCCAGACAGTGCACTTTAAAAGATGCACAGATGAATACAGGAAGTGTACTAGAAGGG----------------------AAACCAGAGTGCAGTGTGTGCACAAGTAGGAAGAAACTGAGACCTAATGGGAAAAGAACACA-AACGATGCCATACATT-------TTGCTCCAGTGCACATTTTTGGTGGC-TGTGGTAACTTATGTCCACTGTTAAAAATAAAATGGACTTGACAAAACATTAGGAG----------------TCAATTTGAAAAAGC-------AATAAAAGTTTCTATATAGTGAGCACCAACTACCAGGTGCAGCCAACTCCTGCTCCAACCTTAAGACCAAATTACTATGGTAGAGGAAGAGGTGCTGGAGTCAGTGGATACAGATTCTAGTCATGACTGCAGTTTGAAAGTTTTTATATGACACATGGCACGTGC--CTTATCATGTCTGTGGTAAAGTAGTCCCAGATTTAAGTAGCACCATGCAAAGGGAAGATGAAGGGATGGAGGAGACA-------CTCTGTTTTTCAGGTGACAACCCTTTCCCT-CTCACAGTGAAGGCTTGGGTGGGCAGGAGACAGGTATCAG-TAAGAGGCCATGTAACCTGGACCAAAGGTGTGAAAAACAGTTTTTGAAAACAGCTTTCAAGATTCACTTAACTgggctggagagatggctcggtggttaagagcactgactgctcttccaaaggtcctgagttcaaatcccagcaaccatatagtggtttacaaccatctgtaatgagatctgacatcctcttctggtgtgtctaaaaacagctatagtgtacttatatataataaataaataaatcttaaaaaaaaaGATTCACTTAACTGCAGGGTAACTGCTAAGTTTTACATTGAATTCAGTGAGAGGCTTGGAAAACTTAGAAATTCTATGAAGGAAATTTTTA-GGACAAAAGGGAGACTTTCTATTATTCCCTGAATAAAATAAGGGATTCTAAATGTTTTCATAGTTT-ATA-----------------AAAATGATGGG----------------------------------------------TAATCACTGACTAAGATTTGTCTTTCA--------TTTCTTCCTAGTGGTGACTGACATGATCATGTACTTACATTAACATCTGTCCAGAAACATCTGGGCTGAAATGTCAAAGGTAGTTTTTACTCTAAGAAAAATGTG---------------------------------------CAATTCTGGATAACCTTTTAGAAAAATTTACCATCAATAATCAGTAGTATCTTT
s HiC_scaffold_1 114433574 2640 - 233722169 TGGAATGTAAAGGTACAGGAAGAAATCACCAGTGTTTTACTGGGGAAGTATGGATGGATGCAGCAATTATGGAGAATAATCCGACAGTGCTGAGTCAAATTAATCTTATGAATATGCTTTAAT----CTAGCAATTCTACCCCCAGAAATCCTCACAG-----TGATTCATAAGGAACACATGTGAGGAACATGTGATACTTTGTGTGTGACCTCAAAGTGTCACATGTGTGATGCTCTGCAGATGGAGAGAACATGGCTGTCCATGGGGAAGCGGGCAGGCAGCATGCAGTGAATACACACTTTGGAAAGTGTCAGGCAGTCTGAAGTGATCATTGTGTTCACCCAGCAACATGGGTAAATCTTAAAAGCACATGCTCCTATGACAGCAAAGCATggca-atcaaagaaaaaaa---atgaactggaTTTCATCAACATTGAAACTTTTGTGCATCAAAGGCCAA-TAACAACAAAGTG-----ACATCTGAAAAATGGGAGAGAAATACTTGTAAACCATTTATCTGACAAAGTTCTtagtatttagaaaatataaagaactcttacaaaccaataataaaatgacaaaaactgaGTTATAAATGGGCAAAATATTTAAGCAGACATTTCTCTAACGAAGATACACAGACGGTCAACAAGCAC----ATGCATCAtcgaaatg------caaatcaaagccacaaGACACTTGACACCTATTAGAACAGCTAGAATGAAAGCCAAATCCTCAAAGCATAAGACAAg-agtgggagagacagggagaaatTGGAAGCCTCACCTATCAC-------GGTGAGAATAAAAAGTGGTACAGCTGCTGCTGGGAAAAATGGtttggcagtttctcaaaaagttagtTA----------CCATATGACCCAACAATTAAGACTTCTGGATATacacaacaaaaaatgaaaacacgtATTAGCCCAAAAACATACATAtcaatgttcacagcagcatcgTTCACAAGAGTAAAAAggcagaaacaacccaaatgtctatgaAGTGATTAACAGGTAAGCAAAA---TGTGTATGTAAA--GGA----AGATTATTAGGATGAAAAGGAATGACGTTACAAGTGCTACACAGTGTTTATAACAAGGATGAACCTGAAAAACATTTTGTCAAATGAAAAAAGCCATACATAAAAGGTTACATA-------ATTCTGTTTACATGAAATGCCCTACACGTCCAGAGAGACAAA-------------ACAACTGGGGGCTTGCA-----GAAGAATGGGAAGTGATGTCTAATAGGCATCGGTTTCTTTTTGGGG--TGCTAAAGTGTGAAATTGCTAATGTTAGCTTGTAAATATACAGAAAACTTTgtaaatatac---agaaaacactgaaTTGTGCACATCAGAGTAGCCAATTTTA---CACTATGGAAGGATTATATCCCAAGTTTAAAGGAAGgcagggatac---agttcagtgataGACTGCGGTGCTTGCCCAGCATGAGCAA-----agacctgggtttgatctctggcactgcaaacagaaatgaaaacacaa-agggCATATGTTTCTGAGGAAGAGCCC------AGCA---TACAAAATA-------CCATTTatataactcaaaaataaatggtaa---------caaaaaatagcttttaaaagagACACAAAAATGCACATAAAACATACTAGAATGGCTGCCATTGAGCACAGGGAAAGAAATGAGAGTGGAATATGGTGACAAATGGAAATCAGCAGATCAATAAatggaaagcaaaacagaattatgCC-CACATTGCCAAACTCATTCCAA-ATGAGTCCTTGGTAGCCTTTCGTAATTACTGTTCACTCTCAAAAATAA----GGcctgacagagagagagagggagagaaagagagctaTCAATTTGAAAACACGATATGGAATAAAAGTTTCTTCCCACTAAGCAGAATCTAC-AGACGCAGCCGATTTCTA-TGCAGTCTTGAGAACAAGCCCTCGCGG--------GTGGAGCTGG----------------CCCATGTCA-GGCTGCAGTGTGAGTGTG---AGAGAGAAGGTGGGACATGCTCCGTGCCATTTCCCTGGCAAAACAGGATGGATGTTAAATACCAC--TGGTAAAGGATGAGAAAAGACCAGAGTGAACAATGCTAGTTCTCCTCTCATGCGGACGCCTTTCTCCATGTTCACAG-GAAGG---GGCAGTGCAGGGCGCAG--ATCAGGTGGGCAGCAGTGCAGCCCTGCCCAGGGACTGAACATGTGACTTCTGAAGACAGCCTTATAGCTACAC-------------------GTCTT------------CACTGAATG----------------------------------------------------------------------------------TGGTAT----------------------------------------------------AGAAAAG------------------------------TTTATGCTGAATTCAGCAAGGAAACTGGAAGACTTACCAACTCCATGAATGAGACTTTTACGGACAAAAGGGAGACTTTCTATTTTTCCCTGAGAAAAATGAGGGACCTTGAACGTTTCCATAGTTTAATAAAAACCTAGAGTACAATAAAATGATGTGACTGCATATGGAGAGGCTGTGCCTACAAATGAAACACAATGTGGCATAATCTCTG---AAGAGTTTCCACTCATCCTTCTGTTTCTCCTGAACAGTGATTAGTATCATACAGTAAAT-CTCAAGTGTGTGTCCAGAAGTATTTGGAACACAATGTCAAAGGTAACTTTTACTTTaagaagaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcggatGAATAATTCTGGATaaccttttagaaaaaaat-ccatcAACAATCAGTGggtttttt

a score=26291
s chr3           104026823 1301 + 160039680 gcattcctaAGGTCTGAGGAAATTTTAAGAGAGGAGATGGA-CCTTCATAACTCTGCCTTT---TCCCTCTCATTATCACTACAAAGTCAGGATAGATTAGATAAGTAAAT------------------------AATAAAGAACAAGG-CAAGTTCAAGA-AGCTCCTAGTTAAAAATTCTTAATGACTGAAAGGTGTGTTTAAAGCAAGGTGAGACAGGACCCC-----------TATGTGTTGTACACCTTGTTTAGGAGCCATTCCTACAAGCTCC----ATTCCTGCTCATGCAGCAGCTGGCCAGGACAAACCTCCACTCCCAAAGAAAGCCACACGTGGCACGGATGTGACATACCAGCTGTGCTGCCAACAGCAACGCCCTTTGAACTCTCTAGAGGATCTCCTCACACTCAAGCTGACACAGAAGACATTA-----AGAAAATAAGATCTGAAAGGTATTACCAAT-TTTTACTTCTGGATGTTTGCTTCT-TGATACATAAATAAATGACCACCATTCACCAGCTA---TTTTTTTTTTCAGCAGTTGACAACTTTAAAATAAATTGTCTTTTAAGCTATGAAGTGGAAAAGGTAAAGAATGAGACTACAGAGCATATAAACACCTCTCACATACTCTGGGCTTGTACTGtgtggtggcttgaatgagaatggccccttagattcatacaattgaatgcttggttcccagtgagtggaacgatttgtgaagaattaggaggtgaattcttgctggagtagggtggccttgtttgaggtttaaaagcccaaactaaagcccactctcattgtctctctgcctgcaacttaatcgtcatgtgtaagccttcagctatgctcccgtgcctgcctgcctgcctggcgctgcgctcccctccattatggtcatggactagcccttggaaacttttatacactgcttggtcatggtgtctgttcacagcaacagaacagtagcaaactgagacaTCAACTTGGGGAAGGGTGGCCT----TGTCCTCACCTTCTTCAGCAACCACTGTCAGCGTGACGGTGACTCCAGCATCTTTGATGAGCTGAACAATATTATCATGGGATAGGTCGACAATGGACTGCCCATTCACAGCAGAGATGTGATCTCCAACTTTCAGTCCTCCACAACGATCAGCTGGACTTCCGTCTATGACCCGGCCAATTTTATGAGGAATAACTGTGGCAAGAACCCCAAGTTTTCCAGTT----TAGATACCTGCTAGTGATGGATTTGTCCTCATCATTATTTGAAATTTT-ACATACTAACATCAAAGAAAAGGCTTCAAAAACAGAGGGGAAAA-----AAGTATAATTATCCTGTCCA
s HiC_scaffold_1 114438305 1020 - 233722169 GCATGAGTAAAGAGTAAGGAACTTTAACATGAAAAGATGGGGTCTTCATAATTcggtttttgttttctcctcattAGTTTTGCAAAATTGGGA--AATGAGATGAGCACTTCATAGCGGTTACTTGGGATTCATAAACAAAGAACATGGACTGGTTCAAAATGGTTCCTAATTAgaaatttttaatgattaaaaaggCAGCTATAATCAAGGCAACGCATTATTCCAGAACTGCCATTGTGAGTTTTATGCCCTATTTATGAGCT-TTCCTGCATGCTCTTCCAACCCTCTTTTAGAAAGCAGCTGCCCAGGACAAAGCCCTGCCTCAAGAAAA----------GGCATGGCTG-GACACAAAAGACTTGGTTGCAACAGTGACTTTCTTTGAACtctt--aaagattttctttaaCTCAAGCAGAGACTTGAgacattactgtaacaaaataagaTTGGAAAAGTGTTTCCAATCTTTTACTCCTAGGTGCTTGCTTCTCTAGCACATAAATAAATGGCCATCACTTACTAGCTAGATTCTTTGTCTTGAGCACCTGACAACTTTATAATAAACTGTCTT----------------------------------------------------------------------------------------------------------TTAAGTTCAT-----------------------TGAGTGGAA------------------AAGGCAAA----------------------------GAGACTCCAGAGTATA---TAAA--------TGAATGGTTCTATCACTGCAGTT--------------------------------------------------------CTGCGCCTCTC-------------------------------------------------------------------------------------------AGATCAGCTTGAGGAAGACAAGTCTACCACTTCCTTACCTTCTTCAGCAACTACTGTCAGTGTGACAGTGACCCCGGCGTCTTTGATCAGCTGAACGATGCTGTCATGGGATAGTTCAATAATGGACTGACCATTGACCGCTGAGATGTGGTCTCCAACTTTCAGTTTTCCACATCGATCAGCTGGACTTCCTTCTATGACTCGGCCAATTTTATGAGGAATAACTG-AAAAAGAACGCCAAGTTTTTCAGTTATCCAATGTATCTACTAGTGTTAggtttatcatcatcattatttaaaAGTTCAACATAATAACATTAAAGAAATGTCTCCACAAATATAGCAAAAAAGCTCCACACATCATCATCCTACCCA

a score=33969
s chr3           104030094 2092 + 160039680 GCATAAAAATTAATTTCT------GTCTTTAGATCTTTTTAAAATTCAAAAGCTACATGCCAATA-AAGGCTGAATATTTAGTGTTAAGAATATTTGG-------------TTCTCCTCTT--TGCATGCAGCTGTGACTACCTTGTAAGCATG-----------CAGGGCTTCAAGCAT---GCTATTATAGCTGTAACTTAGTGTATTTAGGGCC-TTGTAGACTGACT--TGGGGGTGGGTACTGTCACAGCTTAAGACAAGTCCCTAGACATTCAGGGCATCTTGTTAAACAAGGTATCATCCAATTTGCAGTCAATGGCATTTGTACTAGGAAACAAGT-------CTACATTCTCTATGAGTTTTCTAGCCAAGGTCAATA--CTCA---------TGGGTTCTTCATGACTAATGACTGATACGAATAGTGACAGT----ATTTTTG-ATGGTACTGTGAATTAGGTTTAATTTCCTGAGTAAAACATTCCTTACTAGTATTTCTAAATCATA-CTAGGAGTGTCCTATAGACATTA----------------AATAGAC------------------------------------TTTCAATT-------------GGATTGGA-------------------------------------------------------------AAAATTATTCTTGGTTATCATTTATGTCCTCA--------------ACTTTGCTAGAATTATACAGTGATAGTGATAGATTTT-ATTTTTAAATGGAAGACAATAATGTCAGAGACAAGTTCCCTTTAGCACAAAATGAAATCAAGCACTTATGAGTCCATTTTCCTTACAAATAGAATAATTAGAAAAATGCCAGTTTAGCATGGGTCATGTCCT-CCACCAAACATTTTGAATTGGTTCACTAATAGTATAACAGGTGGCATATTAGAAACATGTGACAAATCATATGGTAGCCCTATTGTGA-------------------------------CATCCTA-------------------------------------------------------------------------------------AATCGCCTGAGAAGAAATCATT------------CAGAAACTTGGCACACTGC---------------------------------------------------------------------------------------------------------AGGGTTTGTTCAGACTTGGTAAAGCACCAAGCAGAACTCATCTCTGAAATCTCAGTGGTTCCCTTTTTTACCATGTGGACAGAGCAGCAGCAAGGCACTGCACACTGGTGGTATTCCCACAGAGC---TTGTCTGGGTGAG-------GGAAGGGGTCAGATTCTTAATGTCTTGACACTTGGAGCAG-AGCCACCAAAGT----AGCTAGAACTAACAGAACCC--------------------TAAAAAAGGTCACATGTTGAGTGGACTGGGAAGCCTGTCCTGGTATTTCCTCAGAGT--TCACAG---------CGTGTCAGGTCTTGCCTTGCTTTTGTTAGTATATACCTTTC-----------CCACA----------TCTATCTACATTCATCTCCGGCCTCAGTTTACCTCACAGTCTGGCATATCCAGCTCCTTAGGTCAGGTTAGTACTCGTCAACACTTATTTTCAGTAAAAG-AAAAGACACTAACTGGAAATGCCCATCTTTGTCAAACAAACCCTTTGCAAGCAGACCTGAGAAGTGCATGAC-AAGAGTAGCAGTGACGCGACTGCAGCACTACAAAGAGGAGTGAGCTGTGTCTTGTCGCA--TACGCAGGGCTTCTGTAAGCATGTGCTCACTCAGCACTAAGGCTCACTGCGAGGATGCTGCC----------------TGCGACTGCCTGGTCTTGAAAACTACTTCCAGAGATGCTACTAGGAACTCTTTTTTGGGACACATGTCACTA-AAGACACATTTACCTGTGAGAAAAAAGTGATCTATGTTGAACAGAGTTCTGAGACAAGGTCCCTAAAAAGGA-----------ACAGGTTTTCTGCCTTTCCAACAGTGCACCCTCCCCTTTAAA---GCACAGCTCTGT---CACTAACTGCACTAACTGCTCTGCTTCTGGGAACGGAAGGCCATCATTTACACTTACCCAGAATTCTTCTCTCTC--------------------------------AATACTCCAGGACCCAGGA-CTTGTGACATTATTATCTAGCAGTTAAGTGAAATTACCAATTTTGATTTTGTACCTTGACTAAAAACTTTGGAT-ATTTATAGAGAACATGCCAACCATGTGAGTCTAATTTA-TGTTCCCACTGATAATTAATGAGCTTCAAACACCC-CCTTTCTGCTACATGTTAGTTTTTTGCCTCAGTCTTATATTTGTATTAGGTTTT---CATATCTTATTATTATGTACTGATAAAAATTTTGGAGGCTC-CCTAATAGAGAAGGTTgctgggtactt--gtgtgtcactgccaagtcccagctactctggggctgagccaggaagatcacttaagcctacaagttcaggaacagcct
s HiC_scaffold_1 114440990 2564 - 233722169 gcacagaaattaatttttatttgtgcctttagattttttcaaaattcgaAAGCTGAGTAGAACCAGAACATTCAGTATTTAATGTCAACATTTTTTGGCTCACATATAAAATTCTCCCCTGAATGCACAGAGCTGTG----CCTCACACACCTGAGGACACTTCTCAGTGCTCCTGACCTCTGGCTCTCACTGCTG---------------AGGGCTGCTCCAAACCAGCTGGTAAGGCTGGCTGTTACCACAACTGAA-ATGAGTTTTTGGACACTTGGGAAATTTTGCCAAACAAAGTACTTGGCACTGTG-GGATAAGGACATGTGTTTTAGGAAACAAATGTTCCTTCTGCATTCCCTGAGAATTTTCTAGCCTAGGTCAGTAAACTTACCAGGTACTTGAGTTCTTGCTGACGACTGATTGATATGAATAGgggtaattaatatttttatatggcACTATGAATTGCATTTAATTTCCTTAGTAAAACACTCCTTACTAGCATTTCTAAATCAGACCTAGGATTATGTTAGGCATATTATGACAGTCCTTTATTTAATAGACCAAgcaaagttattctttttttttttttcctgtctttttcgtttttatcattaccagggatcgaactcatgactgcctgcttgcaaggcaggtgcttgtgccgctgagctaaatccccagccccgcaaagtTATTCTTGGTCATGACTTATGGCCCTACAGACGGAACCTGGGCTCTTCTAGGCTCATACAGT-------AGAGATTTTAATCTTAAAATAGGGAAAATTAATGTTCAAAGCAAGTATCTTTCAGCTATGAATTATATCAAGTTCTT-TGACTCCATTTTCCTTGCAAATACAGTGA--ATAAACATCCCAGCGCAGCCTGGGCCACGTCCTGTTGCCAGGCATTATGAGCTGACTCACCAACAAT------TGGAGCATTTCAGAAACATGGGGAGGATCACACAGTGGCCCtgtggtgatttctttctttttattagtatgtacaTAATGCATCATAAtctttttttatcccttttctttccctgccttcatctcttggtccctgttcccttttgtgaaagatctatcttcctatcTTATTCATTTGCCTACAAATGACTCCTTTATCCTTCCTCACAGCAAAGTAGTACACTACTGTGGATGAATATCATACTTTCTAAATCATTACTGTCATTATTCTCCTTCTTATAAAAGATTTACACATACATAGGTCCCCTGAGCAGCAACCTGGCAGATGAAAAGAGTCTGTTTAGA--TGGGTGAGCATCAAGCCGAATTAACACCTTTAGTCTCTGCTGCCCCCTTTTTCACCATGGGAA------------AGTGGTCCGCACAAC-------TTCCTAAAGGGTCAGCTGTCTGGGTGGAGCATGGTGAAAGCAGTCACACTGTTACTGTCTGGTCACTCCATACAGCAGGCACCACAGTAAACAGCTCAGACTCACAGAGACCGGTTGCAGAGTAACTAATTTTGAACACAGTC---TGCCTAGTGAGCTGGCAGA--TTTCTAGGTATTCTCTCACAGTACTCACAGCTATGAAAACACCTAAGGCCCTGCCTTGTTTCTGTT-GTACATGCAGTCCAGGATCACTCACCATAAGCCACCTATTCTGTTTTCATTCATCTCTGTCCTCAAATGGC--CACAGCCAGGCTTCTTCCACAGCTGTGATCACCTTAATGCTCTCAAACATTTTTCCCCCATAAAATCCAAGGACAGCAACTGGAAATA--CACTCTTCTCAAAGAAA-TCTTTGCAACCAGAACTGAAAACTAAAAGCCTCAAAGTATcagcaaag--------------caaaaacaagtgTGC----CTTTTTCGCCTTTAGAGAGGCCTTCTAAAGTACTGCGCTCATTTGGTGCTTAGGCTCACAGTGAGGATGATGACAGGATGGGGCCCCAGTGGAGAATCTCAGAACTTTATAACTGGGACCAGAGA---CACCAGGAACTC--TTCTGAGACATGTGTCACCAGAAAACACG-TCacttaagaagaaaaagtaatcTATTTCAAGC--AGTTCTACAAAAAGG--CCCAGAAAGGAGGCTTCATGTGACAGGATTCCTGCCTTTCCACCTGTGCTGGTGCCCTTCCAAACTGGGCCATCTTTGTTGACAGAGATTGCAACTATGGCTCAG-TTCTGGGAGTGGAAGCTCCTT-------CTGTCCCTGACTGCTAGACTCTCCTAACAGAATGGACAAATAGCATTCTAAGAAGAATGCTTGAGTCTTCAGCATTTTGTGAGATTATTAAATAGCATTTCAGCAAAATTGTTAG-TCTACTTTTGCATCATGATAGAAAATCTCAAGTAATTTATATAAGGTTGATCAACAAGATAAGCCTAATTTACCATTCAGGCTGATAATTAATGAGCTGCAAACACTTGTTTTTCTGCCAC---TTTAGGTGTTGtttcaattttacattttaactgGGTTTTTTGCCCGTCTCATTATCAAGTAATT-CATAAAtgttaaagtttctttttaaaaagaaggttgccaggcatGTCGGTatatgcctgt--attcccagct-ctttgaggctgaggcaggaggatcatgtaaGCCcataaatttgaggtcagcct

a score=24671
s chr3           104032479 850 + 160039680 AAACCTAAAATCATTTAATTAGGTCAAATATTTATATACACAAAGCCATCAaaataaagt-atttaaatgaataaaaacaaa-----aaaattaatataaacaaataaataTGAAAATGTTCAAGAA----TGTTAGCAATGTATCTTCTTACTGAATTTACCTATATTGCTTTGTTCTATGGTGAACACTAGTTTCTCATTATTTTTTGTAGCAGTAGGAAGAGAGCATGTTTAATATAAAA--TTGTTCAGCATTTACCAAATAGTGTAAAAACCTTTTACTATATTTATTGATCTGAATGTTGGGGATTATATTATTATATGAAATTAAAATGGCCAATATGATT------------------TTCTTTGAAATGTCTGACTTCCAAAGATGCTACA---------CCAAAACTATTTCTTGTTTCATATT-CTGATATAGGCTACATAATTATCTTCACAGCATCAGTGACAGTTATAGTTCCAAATGTTACCATAGCAACTGCTCTGGGAAAATGG-AACTAGTATCAGTGAGCTGTGACCTGATACTACAGTAAT-----ACCCACATTATAGCATCTTCTCCTTT-TACATGCATGTATTAATTATAGCAAGATTTTTGCGG--------------------TTTCCTGAAAATGTTTCCTTTTACATTTTTTTCTTTTTTTTCCTAAGGTCTTAGTCACACCATTTAGCTTTAATCAGATCT-TCTACCCAAGAAATAATCAAATCCACTATCAAAGGCAAGAGCATATTAT-TATGTGGTCAAGGATTTTTATTGTTCTGACTTAGAAAAAATAGTTATTGATAAGCATAATATAGAAATATCAGTGTACTTTTTCTTACCTGATAATCAATTGCATTTCATAATCATAGTTAGGGTTCTTATTTTTTAG
s HiC_scaffold_1 114445530 854 - 233722169 AGACCTTAGGTTATTCAG--AGATTGAACATCTACACACAGAAAACTGTCAAAAAACAGTTatttaaatgaacaaaagaacattttcaaattttaaata--caaacaaCTATGAAAATATGCTTGAACATATTTAAGTAGTGCATCTTCTTACTGAATTCCTCAACATCACCTAGTTTTATGATGAATATTAGATTGCTCCTAATCTTTGCAGTGTTAGAGagggaatatttttaatataaaaagtgATTC----TCAACACAAGAGT-----aatctttcattatttctgttAATGTGAATGCCTGGGATTGT-----TGTGTGATGTCAGAATGAC-AATATGATTATTTATTCTAAATAATTGTTTTACGAAACA-CTGATTTCCTAAGACATAACATGAAACGACCTACaagcttccttcctttcatttttctgatataGGCCACATAATCATCCTCATAGCATCAGGGACAGTTTCAGTTCCAAGCGTTACCATAGCAACTgctttcagaaaatggaaactagTATCAGTGAGCAGTGAACTGATACTATAGCAATAACTCATCCAAGTgacaaaattttttcctttatactt---TGCATTAATTTCAGCAAGATTTCAGTAAATTGGTTTGGTTCACAATACTTTcctgaaaatgttttc------------------cttttactAAGGTTTTAGT--GACCATCTAA-TCTAAAAGGATCTAACTGCCCAAGATAAACTCAAATCCAATAACAAA-GCTAGAATATGGTTTACATATGGTCAAAGATTTTTATCATT-TGATatccaaaa-------ataaacaagtatGATACACAAATA----------CGTTTTCATCTTCTATTCAATTGAATTTtgtaattatatttaaag--aatatttttcag

a score=30847
s chr3           104033329 1840 + 160039680 AAACATAAAGATAAGGCAAACATTTAATGAGCTGAATCATAACAGCCTTGTGCTTGCTAGAT--------TACCTCTATTT--------------------TATATATACATCCATCCATCTCAGATGAGAACTCTGTTAATGCTGGCTCAGAATATTAATTTTTAAAGGGTCTATTAAAATCT-TGTCTTTCAATAAAATATATATGAGAGGCAGGAATGCCTCTTATCATTCAACAGGAATGTCTTACAGTTGGAATACA---ATTATTATTTACAAGATGAAATAACTAGGACATAATTG-------GGGCAAGGTTTTCTATTTCCCAGTTTTACTCCTTCTCAACTGCCCTCAGAATTTAATTCATTTCTACTTTAGAAAATGAGTACCCTCCAAACGTAAAAATTATTACTTAAAAATTTA-CATTGTATCTTTTTCTAAATTCATGAAATTAGATCTCTGGCATATTCCCTCAATAT-----TGGTGAGAACTAAGGTTGTTGGGtttttttttttgtttttttttgttttttttGGTAGCATTAGAGATGCCAGAGAAATCAGAG--CTGAAAGGT-----TTAGATTGTCTGATTTTGGAATTAAGG------ATTTACTGCT-TTAAAAAGATAAATCTCTAAGATCTTAATTTA-----GGTC----TTAATTCACTTA---------ATAAACCCAGAAAACCGGGTGTTCCGGG---AGAGAACAGGCTACAGCAGCCCTTACCTCCTGGGGGCGGCTTGCTTTTAGAGGTGAGGATGACAAAACCAAACCCTTCATTTTCTTTCCTCTGTAAGGTGACATCATAGGCCTCCTGTGGGGCAGACCTGGTTGGAAGCTCTGCCCGATTCAGGCGAGGAGATCCGTTCTGTG------AGAAGGCTTGATGGCTTTCGTCCTCGGGTTGTTTCTCTATAATAAACATCAT--GTTTTAATATTTATTGAAAACAGTATAGAAAATAGTTAAGTGCTAGATAAGTATTTTAGTGCTAGTC--TAAAAAGTAAATTTCACTTCTAATAACATAAAGAATAGAAATGTAGCATGCTGCCCCTCTTCCTTGAGAATACTGGGCCTAATCAAAGCACAGGTGCAGACAGCAGAGGGTCTATCTGCCTCCTAAAT-----ACTTAAAATATACAACAGATAAACTACACATGATCTAATGTCATTTCATTTTCGAGAGAGTTCTTCAAAACCTCTACAAGATTAGCTAGTTAAGAATTGTTGAGCCAGTGAGTTAGCTCACTTGGTGAAGGCATTTGTCATCAACATGCATACaataaataaata--agtaaataaataaaACtaaaaaaataaacaaaagttatttttaa---------taa--atgaattattaGAGTTGCTT-TATTTCTTTGACAGTTATAAAGTTCTAACAAAAGCAGATGATAGA---------AGTGACTCAGTACATTTTATTTAAATGAACTGT-------AATATAATTTAACTC------------------------------AGAGATTGATGGTCATAGAT----GTTTGTGGAGGTTAAAGACCACAGAATGCTGCCCCAAACCATCTGCTCTCTACACAGAGTGTTTCTTACATAGGTGATTTATAACTAAAGTTTCTTGGTTGGTAAGATCAGCTGAGTTCATCA-----------------TGATACTCCATGTGCA----------ACAAGCTGTTTGTGTGAATGGCAGAGTCTTCTGG----ATATAAAGTCACATGGAACCCCCTACAAA-GGGCAGTTAGCCTATACCCTTTTGTTGCTTTTCAATG-ATATATAAGAATTACAGAGTCAAATGGGAGCTTTAATTGACTTGGAAAACAAACAAAAACAGGGAAAGGCTTTTTTCTGGGACAACCTGGTCAGACATCACTAAGAATCCTAGTGTACTACATTACTTAAAGACACATTTATAAAGTTCCTTTAGCTCTATATTTGCTTGATGTTAAGAATATTTT
s HiC_scaffold_1 114453098 1847 - 233722169 aaacaaacaaataaaa-ggacaTCGAATCTGCTGAA-CATAATGGCCCTGAAATTAGTAGATACTATTTTCTCCTGTATTGATGAAGctgatgtatgtatgtatacacacattcaTCCTTCCCAGAAGAGAAAACTCTGGATATTTTC-------ATTAAGTTTTAAAGGTTGTGACAAAATTTctacttttcaataaaatatctataaaagtTAGGA-TGCCTC-----ATTCAACAAGGTTACTTTATAGTTGGTATACAGCAATTGTTATTTAATAATACAAAAGACTAAGATATACTTGCATTTTCTGATAATGTTTT--ACTTCTCAGTT--ACTTCT-ATTGTTTATTTCTATAACCACACTTTCTCCTAATTGAAAAAGTCTGtatcct---------aaaatt----ttaaaaaattcagtattatACTTTTTACTAAATCCATCAAGTTAGGTTCCTGATATGCTATCTCAGTATAATCTTAATGCAAACTGAG-CTACTGAGACATATTTT----------------------GTAGAATCTGAGATGACAGATAAACCTGAAGCCTGGATGGTACGATTCAGATTAcctaactttgaaaaaaaatgaaaacactcatTATTCTTAGAAAGGTAAGGACCTAAGGC---AATTTATACACAGTCCCTGTTAAGTTTCTTACGCTTCACTGGGAGGCTTAAACACAAGGCCTGACAGGGAGAGACAACAGGAAACAGTGGCCCTCACCTCCTGGAGGTGGCTTGCTTTTGGAGGTGAGGATGACAAAACCAAATCCTTCAGTTTCTTTTCGCTGCAGGACAACATCATAGGCCTCCTGGGATGCAGGCCTGGTGGGCACCTCTGCTCGGTTCAGGCAGGGAGATCCATTCTGTGTTGAAATGAAGGCTTGAGAGCTGTCATCTTCAGGTTGTTTTTCTATAATAAACGTGatcaattttgatattttttgaaaACTGTA--------ACTT--TTGGTAAATAACATGTTTTGTGTTAAGCCTCTCAAAGTAAGTTTCTTTTCTAATAAcacaaagaacagaaaagca-------GCCTCTGCTCCATGAGAGCTTTGG-----------GTACAGTTGTAGGCAGTAGC-AGCCCATCTGACTTCTCCATACAGGACCCCAAGAATATAACTGGAAAAATACATATGACCTAACGTTCTCTCACTT----GAAaatttgata------ttaaaatatt------------attcttgaaatagt--tttagttctttt---------atGCTTTATAACCTTGT---CAATAATTTAAGAAgagtaaataatgaaaaatgatcCAATAACC-----TTCCTTTTAAGATCAACTGTAAATATAATTTAGTTCAGTGACTGATATTTTATTGATGTCTAGGAAGTC---AGGGGAACAGGGGAGAGGCACTGCTTCATTGGAACAGTCTACCATCTGAACAGGATCTGTCCTCCACAgcgtgttttctttctttctttcttttttttttttttttggtattaggaatcga-actcatgactttgcgtttgcaagg---caggcacttatgccgctgagctaaatccctggccc----aacagaGTAT--------------ATTTTCAATTAAAGCTTCCTGACTGATGAGTTCAGAGTGGTTCGTCATTAGCAGTTCTCAGCCTTGCGTCTTCCCTTGCAGGGACACAGGACGAGCTGTGCACACAAACAACACGCTCTCCTGGGCACAGATAAGGTCAGATGGAATTCCTGGCAAATGAATAGTTAACCCATA-CCTCTTGCAGTTATTCAAGGAAGACATCACAATTTAAGAATGAGACAAGGAc-caaatcaactttttaaaaaggctaa---------------tTTTGTGTAATAATTTGGTCAGACATTATTAGCAATCCCAATACACAGCA--GCTGTGTAACACA------------CTCTGGGCTTAAATTTACATGATCATAAGAATATGTT

a score=25865
s chr3           104037601 1326 + 160039680 agggctacacaaaaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaagaaaagaaaCTATAAGATCTGCTCATATTCTATTGTCATGGTTTATTTAGATGGT--GGGCTCTGCAATTAAA----AGTTTTAAACCTAGATCCATGACTTCCTGCCTGTA------AACCTTTCTGTCAATGACTGCACA------TGGTAATAAT---TACACTATAGAGTCTGGTGGTGCAAAGGAAATAACTGATGCATATAATACATAATGAGCTC-CAAAAATATTATATTATATCAAAACTTGCTTTTTTTAGTACATATGCATGTGTATTGGCATGGGCACaaatggagactctgtatgtcagggtctctcactggcctggagctcaccaac-taggctagactggcttgccagcaagccctagggatttcccctctctgcctccccagcaataggatggcgccaatag------------------------ttatagca--------ccatgtttggctttttatggggttatggagatagaa--caaacacaggacctcatgcctataagggtaagaatttactggctaagttatctttcctggcccTGTACCAAAATTTTCTAAAGAAA---ACAT-----TCTACTATTTGTGAATATTTGGGATTTCA--------CCACGGTTAGGCCTTTTGATATATTCAGGTTGAGGCTATCttaatatgataaaa--------------taactttatttatattaaaaaatttaaaCTGATACTCCCATTTACAGTAATATATTAGTAAAATT-----GATTTATATGATAA------TGTAGCAGACCAAAATTTATATCTACTTT--------GGAAATCTATTTCTGGAT--CTTTTACACTACAAAGCTTTCTGCAATTG-GCTCAGAATTATCCCAAAAGTGTCAGCATATATACTGCTGAATATTGTAGAACACCCTATAAAACGAGA--GCAAGTGGATTCCTAGCTTTTAGTGCTGAAAAAGCTTTACAAACCTCCATAGAAGATCTTCCTCCTGACAGTTAGTAGCACGTGTCCATTTCGAGCAGCAGTAGTCATTAAGTCTAATACTTGCTTGTGTGATTTTCCTTTAACAGGAATCCCATCAATACACATCAATTCATCAGCAGCACGGAGCCTACCATCTTTTTCAGCTGCTCCCAGGGGAATGATGGCCCCAATATATATCTGTAAGATAGCACAATATAGATTGGTCTATAACATTCACTAAGATCAACTGAAGAGCTAA----------------------------------------AGAACTAATCTATGAAAA--GGCATACTTCAGAAAGGTGGTATTTCAGAAAGTACATATTCTTTAAAGTCGTACTTCAAATACCCACACTGTGTTGTGTAATTCTAGAGCCCCAGGGTTGAGTCC----AAGAAAATACAAAG
s HiC_scaffold_1 114455373 1307 - 233722169 aggtTCACATAAAAATCCTAGTTACTATAAACAAagctacagatgagaaaa-------------ctgtaaGAGATGATTATATCCAGGTGTCATGGTTTAC------AGTCAGGACTCTGCAattaaactataattttaatCCTGTTCCTACTACTTACTGGCTGTGTCTCTCAACCCTACTGTCAGTCACTGTAGAACTAGATGGAGACAATATGTACATCATTGTGTTTTGAGG-----AATAAACAATACATGCATCTAGGACATAATGAGTACACAACAA----ATACTATATTAAAACtttt-----------------------------caagggc-----tggggattt----------------------------agctcagcgacataagc--gtctgccttgcaagcaggcagtcgtgagttcga-tccctga-taccgataaaaaggaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaacttttcaagcAGAAAAAGTCCATTTTT---------TGGAATACTTGAGATTTCATCCAGATTCAAAATCTTTTGAT-------------ATTTAGTTAGTGGGATATCT----------------AAGAATGGCTAAAAAActacacatgtatgtatatttcttgtttgtttctagTGTTGCAGATAAAACCCAGGGCT---TCTTCACATGCATTC-----TAGGCaagcacactaccactgagctacattcccagcctagctttatttgt-ttaaaaaatttttttagattcATCCTCTCACAATACTATATTGGCAAAATTTTATCAATGTATAATATAACTTTAATATAG-AgcccaaaatatttatttattttttttgatagCAGTATTATTTCTGGATGCCCTTGGTCTTCTGTGGCCTTCCACAGTGGAGTTCTGGGTTATGCCAAATGAGTAATCTGAAAcaccaataaata--ataaaataacttgtAAAATCACACAGAAAGGGGG---CTATCTCT----------------------ACCTCCATAGAAGATCTTCCTTCTGACAGTTAATAACACATGGCCATTTCGAGCAGCAGTGGTCATCAGGTCCAAGACTTGTTTGTGTGATTTCCCTTTAACAGGAATTCCATCGATGCACATCAGTTCATCAGCTGCGCGCAGCCGACCATCCTTTTCAGCGGCCCCCAGGGGAATAATGGCCCCAATGTAGATCTGTAAGATAACAATGTGAAGATTGGTCTGTACAGTTTACTAAGATTAGCTGAAGATTTAAGAGCTTCCTGACTCATCACTCTGCAGATCAACAGATTTCTGAGATTCACCTCTGAAAACTGGCACATTTCAGAAAGATGATACCTTAGAAAGTGCCCATGCTCAAAAATGGTACTTCAGATAACCACACTGCATTATGTAATTCT-------CAGGGTTAAGTATCAAGAAGaaagtacaggg

a score=12442
s chr3           104043204 203 + 160039680 CACTTACAGACTGGTCAGGTCCATCTCCTCCTAGCACCCTGAAGCCAAACCCTGATTCTTGTTTCCGAAGAAAGACATCCAGATCTTTGGTGTTTGGTGCTAAGGAAAATAAGAATATGtaaa--------tataatttattttaaaaGTGTTAAAATAAAGCTCAATATTTGATAGAAAACTATTATAGAGC-ATTCAA-AAACTATAATCT
s HiC_scaffold_1 114458751 212 - 233722169 CACTTACAGATTGGTCAGGTCCATCTCCTCCTAGTACCCTGAAGCCAAATCCTGACTCTTGTTTCCGAAGAAATACATCCAAATCTTTGGTGTTTGGTGCTAAGGAAAACCAGAAAatgtaaagtaaatattttgattcattttaaaaagataaaaataaaattcca-acaCAGTAGGATAATATTAAAGAGCAATTCAAtaaattataatct

a score=67266
s chr3           104046570 2879 + 160039680 tggatgtacag--tgaataaaaaaaTTGTAGGTGCAGATAATTATTTTTCTCTATATTGCAATGGACCTAACATGGTATCTAGTGGACGGCTTGTACTTAATT----CATGGTTTTGAAGAAAAGGAATG----AATATTGAACATATTCAGTAAAGGCTCAGGATCACAT----TAACATGGGAGTGAAGGAATAATATCTCAATATGCTTGTAAAGGGTGAGAGGAGGGTTCCAATGTTA-------AAATAATGCAAATTGATCTTGTTACACACTCCCCTGAAATAGTTCACAACTACTTACGTTTATCTTCATATAAAGTCTTAGATTTCAGGTAGACCTCAGAAGGATCCAATTTTGGGGATCCTGATCTGATTATGCTGGGCGGAAAAGGCATAGGCTGGGGAATAGGCTCATTTATAGTCTCCAAACTTCCTGAATTTTCCTTTGTATCTGTTTTCTGAAATAGAAATAAAAGGGCCTTACTTAGTATTTT--AACAATAAGATGGTTGGTTATTTTACAGAACCATGGTGTAAACTGTGGGTGTTAACTAAGCAGAGTTGTATAGACGGCAAAGTTACAG--AAGACTGGTT-GTATGCCCACAG--ACTCACTTACACAGCTATTTCTATGTGGTTAAAACATAG--TTAACTTACATTATTTAAAGAGTTTATAATGAT-TCAACTGGAGGGCTCTGGTT--TTATGTTTAAGCGGTCTTACCCTTTCCTTCACCACCAAGACACAAAAAGATTTGGAGATGAAGATAATTA-------AATACAAGGTAGC-------------------------------------------------CACCCCCCACTCACTAACTTTAATTCCCAGTGATGATGTTTAAGATAAT--ATTCTTTTTAAGAAACT-GGGTTGGGAGTGTTACACCTCCTGATATA--TGACTAAACCTTTACTGGCCAATGCAAATCCATCTTGGAAAACACCCATTTTGGCCGGTCAGAA---AAGGAAAAACAAAATACAAATACAGCTTTAACAAAACAGTCAGGCAGTTATTTCTTTATTCTATTTTTCATCATCATCATTGCTCTCATCATGATTTATGgtgtgtgagtgtgggtgtgcagagcaaggtcagaggactcctttcaggaagtcagttctctccttcccctgtaggatttttcatccaactcaggttgtcaggtggcagagcaagaacctttaatcactgagctatctcactggctccAAAGTGAGTTCTTTAATAACGAATTCAAATAC-AAATTTCAAAACTAGCCTAAAATGAGAGTTTGAGATCAGCTCTGCCCTCCTGATTTTTTGTTGAGAGAAGAGTCACAGGCATATATAATAATGAGCACTGACAAGAATGCAGGAGCATCAGCTTATA-----CAGGAG-----------TACTGAAAGGTGAATCATTCCCA-AGTGTTGTGCCGCAAAGAA-CCCCTCACTGACCCAGACTCAGTGAGATAGCA-GCAAGGTGACAGAGCCACCTCCCCTTCTCCCACATGTTCTAGGATTCTGTCAGCACCCCTAAAGGTCACCAGAGCCTTCCATC----ATTGTCTTCAGTGTCACCATAGCTGCAAGGGAACTTAGCATGAA------------ACACAGAACTAA-AATGGTTGCTAGAGGAAGGTGAGGAATGCAGAAAAA-ACAGTGCAATCTTAACTGACTGGACAGAAAGAACTTCTATTCATGCCGAACCAAATGGTACAGAGCGCCCATAAAAAAGCCAACCCTAAATGATAACTGCCCTCCAAGTCCCACCCTGCATGCCCTGATCCATTCAACAGAAACTTTTG---CAGACTTAGTGTGTTGGAAGGAATTAACGTATTTAATACTATGTCATCTTTCCTTTAAAAACCTAAGATTT-TTTTCATAGAAA-CCATCTTTCTATTCCCAATAGGACAAAGCATT-------------AACTAAGCTGAGGCTTT-AAGCATAACTGTCATTATATCCATG----------TGTGTATCCACAAATGTATGTTAAGCCTGGTAGAGTTTCTTCTATAATAACTGTGCTATTTGTACACAACCATTTTAATGTCTATTTTCTCCATCTGGATCTAAAAGTAGGTTTTTCAGTTATTCAAAGGAATAACAAAGAAGACACAGTTTTAGATCCATTAGTCTTATCAC-TTGATACAAGGAGATTTAGCTCAGAAGACAACAATTATTTTAGAAAGTTTTGCTTAGTCTTAAATTTA---GGATCATCTAAGTCTGGGGATTTACAATCTCCATGAAATTATGATCAACTAGTGTATGGTTTCCTTGGACACCAGCAAGAAGATGTGTTAATGGCTTGCCACCTGTCTTGATAA---TCAGCTACTTCTTCCCTGGCTCCTCTGTA--ACTAACTAAAAGGATGATTACACAGGCTCTTCAAC-TGCCCACTTTATGACTTTGGAGAGTAGGTAGGACCACTGGTAGTCTG--GGCTTCTAAGTGCTGCTCCAGTAGCAGGCCAGCACCAGTCCTGCACAGACT--TCAAAGGGAGTTTCCTATCAATACCTGGGGTTCTGATCTAAGTCTAGGGCAATATGCCTCTCTGACTTCTCACAGC-----CATTTT------CATAGCAAGGAGCTGCTCTCCAGAAGAAAGGAGGCAGCTCTTTCAGGGTGTGAGAAAAACACTGGAGGACCACCATATTACTCACCGTTTTGGCAGTTTTAGTTGGTGAACAAGGACCTAAAATTAAAACAAAACCAAAATTTAAAAACAGAAAATATTCCTAGACCAAACATTAATAATATCTATGATGAAAGTTCAATTCTATCTAGTATCAACAACGTGTCAGGCATTAAACA--------------------TCTATTATC-------TCCAGAGGCATAAATGCTAAAACCATTTAATAA------TAGTTG--AGGTTCCTTAAATCACAGAAACAGTAAGCAGAGACAGAAAACTGATAT-CAACCATCTAATATCAAACCATGACCTCTGTATTATATTTGTTAAAA-------AACTCTCAAGCA
s HiC_scaffold_1 114468900 2815 - 233722169 tggatGCAGGGCCTGAATAAGCAATTTATAG--------------------CTGTATTCCAATT-ACCTAATATGGTATCTTGTAGGTATCTGGGACTTATTTACTCCACAGTTCTGAAAAGAATGAATGTGTGAACACTGCATATACATGATAGAAGCCCAGAGTCACATACATTAAAATGGGAATCAAAGAACAAATTCTCAGCATGGTTTTGAAAGATG---GGAAGATTCcagtttaaggaaaaaagaaaatctaaatttatCTAATTACATGCTTTCCTAAAACATTCTACAGCTACTTACGTTTATCTTCATATAAAGTCTTAGATTTCAGGTAGACCTCAGAAGGATCCAATTTTGGGGATCCTGATCTCATAATGCTGGGTGGAAAAGGCATAGGCTGAGGAATGGGCTCATTTATGGTCTCCAAACTTcctgaattttcctttttgtctgttttctgaaATAG----AAAAGGGTCT---TTAGTACTTCTAAACAATAAGATGGTTGATTAACTCATAACACTGTTGTCTCAACTAGATATGCCAACTGAGCATAGCTGTATAGGTGGCAGGGTCACAATCACAGCTGGTTAGTAGGCTGACAGGAGTTCACTTTTCTAGGTGCATATATCTGGCTAAATCACAGTATTAACTTACA-TAAGAACAAAGTTTACAGTGATGTCAACTGAAGGGCCTCCATTAGTCCTGTTTAAGTAATCCTGTTCTTTTCTCTACCACCACGATACAAACTGACTTTGAGac-aagataaagaggaacatGATACAAGACAGCATTTCTAAAACAAGAAGACTCAGAAAATACCTCCAtaaattctgatatttatttCCAACCTAATGACTTTAATTTCCAGTGAAGatgtataaaataatacattctttttaaggaaatagaaTAGGGAGTGTTA---ACTCTAATTTAGTTTATAAAAATGTCACT-----------------------AAAAACGCTGCTTGGTCATTCCAAATACAAGGAGGGAAAATATCCCA------------------TGCCAGGCAACCATTTt------------------------------------------------------------------------------gagaa--------aggaaacagatttt--------------GGATATTT--TCCTACTCAGAT-----------------AGAACTTT-----GCCAAAATAACACTCAAG---CAAAATGACttctttaataataaatttaaaaatgaaatctaataATTCACCTAAAATATGATTTTGAGATCAGcg-tattattttgcattttcgtTAGGATAAGG---------AGATTAAATAATTAACATTGATTAGAACACAAGGACATCAACTCCTGAGAGCCAGGAGGGCAGTCCCTATAAAGTAGGGTTTAGCGCCTTAAGAGTGTTGAGTCACACTGAACCCCCTCATTGATCCAGACTCAGGCAAATGGCAGGAAAAGTAAGGGCAGCCCCTTCACCTTCCCTACATGTCCTAGGATTCTGTCAGGATACTTAGAGGTCACCACAGCCTTCCATCAAATAAAAGCATCAG-GTCACTGTAGCTACAAAGGCATCTATTATCCACTAGATATGCTGGTATAGAGATAACAATGACTACCTGGAGAAgcagagaaaagtagaaaaatgcaGAGCAATTTGAACTAAATGGACGAAAGGAATTTCTGTTCACAGCTGACCTAATGGTACAAACAGTCTGTAAAAGGGCTGAAGTTGagt----------------gtttcttcct-----ttttgatccaaacaacaacaaatttggatttttatttggTGGGCTGGAAAGAATTATTGCATTTAATGCTGGGTGGTCTTCTCTTTAATAGTATATGGTTTGTGTTTATGGAAAGCTATCTTTCAATTT----TGAGATGAAAGACTTCAAGGGAAAGAGAACTAAATtaggattttaaaatgtaattgtcTTTATATCCATAGAATTATGGCTACTTAGCCAGAAATGTGCACC--------TATAGCTGCTTCTGTAAAA---GCACTATTCGC-TAAActcattttaaagttctttttctttacGAAAAACTTAAA-TAGGCTACTTAACTGTTCAGAAGAA-GCCAAAGAGGGCACTGTCAAAGATCTGACAGT-GTATCACTTTAATATAGGCAAATTTAGCTCAGAAAGTCACAATTATTTTAGAACattctgctttgttctgcatGTAAGGAGGTCATATAAATGTAGGCCTTTATAGTCTCCAGGAAGTTACATGCAGCTACCATGTCTTTACTGTGGGTACTAGCAAGGAGATG---TAATAGTTCA----CTATCTTGAAAACATTTAGCTACTTAGTATTGTGCTCCTCTGAAACACGAAATAAAAGAATT-CTAAGTAAATTCTTCAATgtgtaaaatttttcattt-----agagGATATGATTATTGGTAGTTCGGAGGTTTCT-AGTACTCTTCCAGTAGCAAGACTTAACTATGCAAGCACATCCCAAACAATGGGGCTTTTCTGCTGTCCCCTGAGTTTCTGATCCATATCTAGGACAGT-TGC--CTCCAATTTCTCCCAGCATCAGCATCACAAACAGCATAGCAGGGTGCT--CTTCCAAGGGAAATGCAGCACCTCTTTGTGTATCGGGAAGAAGCATCTGAGGACCACTGTAATACTCACCATTTTGCCAGTTTTTGTTGGTGAAGGAGGACCTTAA---AAAAATGagccaaattttaaaac---acagcatTTTCAGAT----CATAAATACTGCTAATGATAAAACT--AGCTTCAACTTTTAACTCCTATGTGCT--GCATTATACAGTACATATATTaagtcacattttgtttttacaacaATCCCCAGGCATAAATGCTATTACCACTTAATAGATAGGTTAACTGACAGCTTTTCTACACCATGTAA--------CGAAAGCAGGAAATTGACGTGGAACCATCAGATGACAAACCCTGGTCCCTTTTCTATACTGGTTGAAGCACTGGTAACTCTCCAGTA

a score=72457
s chr3           104050123 1424 + 160039680 AATATAAAAACTAAGAATCAGGGTGATAA--GGAAGAAAGCCTAAAC---------------ACTAGTCACTCGATGGCATGGACTTAAGAAAGTCTATTGAAATACAACTTTGTAGTTAGTCCTT-AGAATTAGATCATAATGTCTAGGAAAAATTCATGTCAGTTGATAATCTTGAAAAATGAGAAATTTCACATTTTTTCACATAAGCATTGTGAGGTTTAATTAACACATACAGGCAGATCATAGAACTTAAAATA-------------------------------------CTGGTCAGGTTAACACCTC-CCAGATGTTTTACTCATACATGAATATGTTAGCATTTCAAA-----CCTCTAGTGTAGTACAAAGTTCCCAATGAAACACCACAGGCTAAAAAAATCCATTTCTATTATTGTTATCAACAGAGAGAATGAAATTAAGAGGATGTATTT-ATTTGAAATAGCATAGTATCATGATTTTCTCTAATCattaaaattataaatcaaattttaaaaaGTCTATCATGGGGAAGAAATTATATTCATAATGGACATGAATGAAACCACCAATAACCAACACACAGAGCTAAAAAATACACTGCT-GCTGAAACATGCAGACAGAGCCACAAGGACAATGCACGCTAACTGCCAGGGAAATCTGC--------------CCAGCCTGTCG-GGAGGGCGAT--------------GCTTGGTGTGAGAGTCATCCTCGGGTGT-----TACTCACCTCCTCTTAAGATAAGCAATGGAACATCTGCACCTACTGGGAACTGCTTTAGGACTTCTACGACTTGGAGATGTGTTAAATTCTGCACATTCTGATGGTAAATTTCTTTGATGATATCCCCTTTTTGAAGGCCTTGACACCACTGGCTATCCAATATCATTTTCACCTTCTGTCCAGTTGGGCTGTCAGCAATTGCAAACCCAAAGCCTTTGGGGCCCTTAATCAGAGGGATAGTCACTAGTTCAGGCTGTGAGCTGCCTGATGATGCCAGAGATGCCCTCTGCTCACTTGACTCAGATGGACCATTGAGACGATCACTGGCCAAGATTTGTCCTGATTTTCCATTCTGATCCAAAACCATTGCTCCCAGTTTAAAATCCTGAGTATTCATGCATGTCTCTCCCTTTGTTAAAGATTGTCCATTGATGACAGGGGTAGCAGCAACAATGTCCACAACAGGATCTTCACTGTCATCAGGAAGTGGATAACCACGGCATAAAGTAAGGTTGACATACTGGTTGACAGGTACCAGTTGAAACATCTGGACAACATCTGCATGGGTGTGACCAAGGACACAGTTGCCATTGATGTCTACAATAACATCACCTGATAAAATATAATCATGTT-AAAATATTAAAACCACCAAACAAGTTAATCTTTCTGTTGGGGAAAAGGGAAAAAACAAGATCTGAAACTACATTTGAATTCTGAAA--CTCTAATTGTTCG-TAACTGTTGAAAAG---AGATTTACAGTACAT
s HiC_scaffold_1 114471953 1491 - 233722169 aaaatccaaaataaaagccactgtgataaaagaATGAACGActaaatttcattctttaaaatactaGTCATTCATCATTGTGT-TTTGAGAAAGGCTATTACTATGGAACCTG------AGTCCTTGAAAATGAATTTACAGTATGTGGGAGTGGTTCATGTCAGCTGatgtctttgaaaaataa-aaatttcat-ttctctcACATAAGCACTGTGGGACTTAATTAACACTTATGGGCAGACTCTAAAGCTTAGGATAAAATTTTTATGAGCATAAGCCATCATGAGTGCTTCTGTAGAACAGGCTAACACACCATCCAAAGCTTCATTTATCTACAGAGATGGTAGTTTTTTCAAAAGCTCTTTTGATGCATTACAGAGGTTTAGATGAAGCACCACTAG---------TCAATTTCTATTATTGTCAtcaacagagaaaatgaaattaagaggaTATATTTCATTTGAAGTAGCATAATACCATGACTCTCCCTAATCATTAAAGCtgtaaatcagattttaaaaagaatacagtgGAGAAAGAA----ATCCATAATGGACACAAATGAAACCACTAATAACTAAAATGTGG---TGAAACAGATACTGCTTGTGGACGCAatcagacagaa----aaggaaaatgcacACAAACTGCCTGTAAAGTCTGCTGGGAAAAAGCATTCTGATCTATAATAAAGGGCAATTAGCAAACATAAATGTCGAATGTGAAGATACTTCCTGGTTGTGCTTTTACTCACCTCCTCTTAAGATAAGCAATGGTACATCAGCACCTACTGGAAACTGCTTCAGCACTTCTACCACTTGGAGATGTGTTAAACTCTGCACGTTTTGATGGTAAACTTCCTTAATTATATCCCCTTTTTGAAGGCCTGGGCACCACTGGCTGTCCAatatcattttcaccttttgtcCAGTAGGGCTGTCAGCAATTGCAAAGCCAAAACCTTTAGGCCCCTTAATCAAAGGGATAGTCACTAATTCTGGCTGGGAGCTTCCTGATGATGCCATGGATGCTCTCTGCTCATTTGGATCAGATGGACCATTGAGGTGATCACTCATCAAGGTGTGTCCTGATTTTCCATTCTGCTCCAGAAGCAGTGCTCCTGGCTTACAATCCTGAGTAGTCATGCAAGTCTCCCCCTTAGTTAGGGACTGTCCATTGATGACAGGAGTAGCAGCAACAATGTCCACAACAGGATCTTCACTGTCATCAGGAAGTGGATAGCCACGACATAAAGTGAGGTTTACATACTGGTTTACAGGTACTAACTGAAACATCTGCACAACATCCGCATGGGTGTGACCAAGGACACAGTTGCCATTGATGTCTACAATAACATCACCTGATAAAACATAATCATGTTAAAAATACTCAAACCACCAAatcagttgatttttt-----gtgaGACAGGCAGAAACAAA---CAGCACTAAATTTCAATTCTAGAAATCTCTTATTGTTCATTAACTACTGGAAAGATAAGAGTTCCAACACAT

a score=72767
s chr3           104054010 4678 + 160039680 [encoded data, 5733 characters]
s HiC_scaffold_1 114476387 5288 - 233722169 [encoded data, 5733 characters]

a score=54854
s chr3           104058934 2925 + 160039680 TAGAACAATTTTCTTTTTAAAGATACCCCCCTC------------CACCCTCCTAAAAAAAGA---AGACCGAAAAACCGCCACTGCAGCTAGTGTTACTACTACAAGATTCCTGCCAAAAGCAATCATGGTGCCATCTGGTCTGACAATCTAAGAGAGCCAAAGAATAGCCATTCAAGTAACAGCTCTTTATCTCCACCAGTAAACTCACTGCAGATTACCACAGTTGAAATTCAAAACCCAGTTAATTTGGGATTGAAGCCACACTCTGTAGCACAGCGGACTCCACGCTAGTGTGCATCTTGAGTACAGTCTGTTCTT-CTAAAGCTAATGAATTATCCTCCTGTAAATGAGCTCGTTCTGAGATCAGCCGT-----------GCGCTGCCA-----CTTGTATCTTACTTAGCTGGTTTCACACACCTCCATGACAACGCAGAGT-GGGTCACTTCAGGGTGTGCCTTAAAGCTGCTTCAGTGCTGTATTCTTGCTTAATGGGAACCAGGTCATTCAGCTAGAGATTTTATAACAGGCAAATGACTTTCACCTCCTGACCATGTATTCAAATTCACTTGGAATGGGAAATAATGAGAGTCATTGTCTCAGAAATGTTCAGCAGTGTCCCTGGCAGATAATAGTTGATTGAAGCCCAGTTTAAACAGG-CTAAACTGCAAGGGGAAGAAAAGCCCCACACAGCCCTTTCAGTCAGCCTCCAAATCTGTCTCTGACTTGAAAAATCAACAACAAAACCAGTTTCTTCCTTCAGCTACACATGCCTCAGGGAAAATAAAAATACCAGAAGAGCTGCTG-----AGTACTT-TGCATATCATACTACA-----ATTAGCAGTGTATTAAATAACACAATAGAAACAAAATTAGTAGA--TTTTCAAAGGAAGCAAAACATTGGAA--GCAAAGTGGCACATTAAATACCCTCAGATAACTTTGAGTTCTTTAGGATACACACTGGCTTTTAAGAAGTTACTTCAAA--------CAACC-------TACATATTACAGACCACAGTGGGAGTCAAAGATATTTACTTTAGGGATAATTACCAGGAAATGGTATTGGTTTACAATTAATGGTATTGAC--------AATTAATCATAAAATTAGA--------------------TTTCCAGGTAATAGTATGATTTTGCTTCTGCAAATAAGGTTGTTAATATTAGTTCTTATTCTTGTATCCTAATTACCAACTGAGATACACTTGGCTAATGAAGTCATTGAAAGTTTAACTGTGTGTATTCTCTGAAAAATGTACCCCC--CGCTTTTTAAC--TCTCAAGCATTAGTTAAATAAGGTTGTTTTCTTTTCCCTaacaaaatc-------tcaattgtttgatttcactaataaagactcaggacccagatactagggtgaaggcctgctagctcagggaggcagagaaagcatctagctgatcttctttctgagcacaagtccca-gaatgaatcacttttctc-----------acatggtctcagaaaacccccttcaaatgga-atgtccctaccttccacttgctgtgcacctctccgtccattctcctaaatcccttgtactctctggtttttttttttttttcctcaataatactatgttcactggttgcttgctctgccttttgccttttgccctatggttgactttatttaatcctgtttacaatattcaagctgaaagttcttggaataaaagtgtgtactaaggctgagccacactacaactaaaaatatttttcc--ccccaggaaataacacaatttcggagttcacagtgtACAACATAAGGTAAATTCACTTTTATTTACAGAGCTTCCTTATGGTTGGGAGAAAAAAAAGAGAACCCTCATTCCTCCAAATTTCTAGGTAACACTGAAGTTTTTAATATAAAATTTCCTGCATC--------AACACTCAAGGTTAAAATTGTATCTGCAG--------------CATCCATAAAGTAGGCAATTCCGGTGGTCTGAAC-----AATGTAGCAATCAGATAAGGGGAAAGAAAGCTTAGAAGTAAAGATGACCACTGACAACTGAATGGTGTTCCTATCTGTTATATACAGTTCCTATCTGTTATATAC----AGTTCCTGTCTGTTATATACAGTTCCTGTCTGTTATATACAGTTCCTGTCTGTTTAAACAGCCACATTAGAAGCAATCTTCACTCCTTGAAAGAACACTACACTTTCTAGATCTCCTTAAAAGAGAGTATACCTTTAAGTATATACCTCTAAACTTTGAATTAGTGTATCACAATGACCTTAAGGTCTTTTAATTGCTTTTGGAAGTATACAAAGTAGTACCATGGGAG---TTCATTCACCCAGGGTCCATGCCTTCCTCTATGAAGAATGCAGTAGCGAGGATAGCTACTCCAGCCATTAGTCTTC--ACCAGTTTTTCTGTTCCTTTACTGCTCTCTCCATCCTACTCTTCCTTGTTCCTCCTCCCTTCTCTTCTTCCCtttgagatggg-tctttctacattcttaggctcatcttgaaaccctgactcaagtaatctccttcaccctctggagtactgggaggacaggcatgtgctaTGGTCTGGCCTTTCTCTTATATTCTGTATTGAGAAACCCAACGACAGCTTCTCGAAAGCTAAAAGTCAGCACAAAAAGTGT-------------------TCCTTCCTCTAGTTAAAATAACCAGCAAATCAGGTTGCAGAAACATAAAGTGCCATATTTAGAATTCCCTAGATCTGTATGGTA-AAGGAAAGCATTTGGGAGACTATTAACTCAAATAACCAACTTACTCAACGTAGTATGTTCCATACTGAGGGTCCTCTATTTTCTCCCAGCCATAGGGAAGCTCTGTAAATAAAGAAAA------------------------------------AAGTAATCAGTGAGTGAATGTACCTTATTAAACTAATATTTGAG----AGAAAGTTGAGGGCTCATTTTTCAGAGAAGAAAACACAG-----TATGGGTAGCTTCTTCATCAGTCAA-GTGTATCTCAGAATATAATTAGGA-TATAGAACAAAAGGTGACCTTa
s HiC_scaffold_1 114482840 2627 - 233722169 tggaatagttttattttcaaaattaaccaatCCATTTCAGAATCTCAGCCTCCAAAAGAaatattcacaaagaaaaac------tgcAGTTGGTGTTACTACTACAAGGCTCTTGCCAAAAGCAATCATTGTGCCATCTGGTCTGACAAACTAAGAGAGCCAAAGAGTAGCCATTCAAGTAATAGCTTTTTATCTCCATCAGTAAACTCACTGCAGATTACTACAGTTGAAATTCAAAACCTAGCTAATCTGAGAATCAAGCTACACTCCATAGCTCAGCTGACTTCATACTAATGTGCATGTTGAATACAGTCTGCTCTTCCTTAGTCTAATAAATTAT-CTTCTGTAAATGAGCTCATTCTGGGAATGGTCATACAAAATCACAGTGCTGCTGTTGTTCTTGTTTCTAATTCAGGTTGTTTCACACACCCCCATGATAACTGGGAGCAAGATCTCTATAGGATTTGTCCAAAAGTTGCTTCAACATTACATCTTTGCTTAATGGGAATCAGATCATTCAGCTCAAGATTGTATAACAGGCAAATGACTTTCACCTCTTGACCACGTATTCAAATTTACTTGGAATGGGTAATAATGAGAATCATTATCTCAGAAATGTTCAG-AGTGTCAATGGCAAATAATAGTTGATTGAAACCCAATTCAAAATGGCctaaaatacaagaagaa-aaaaattccagaaaatctTTTTAGTTGGTCTCCAACTGTTCCTTTGACTTGAAAAA-------------CAG--------------------TGCCTTAGGAAA---AAAGCTAACAAAAGAGCTGCTATTTACAGTACTTGTTTACATCACATTTCATCAGTAACAGCAACATATTAAAt-atacaatggaaataaaattaccAGAGCCTTTCAAATCAACCAAAACATGGAAACTACTAAGTTATATACCGAACGGTC-AATATAACTGCTGCTTCTTTAGGATATACATTGGATTTTGAGAAGCTATTCCAAAAATTTCTCTAACCATACTGATTCACATTAAAGACCGTAATAGGAGTTAGAGATGCTTACTTTAGGAATAATTACCACAAAACAGCATTGATCTATGAT--ACAGTACTGAAAAACTAGGAagcaattataaaaatacaagatTATTATGTTTGCTATTTTTCTAGACAAtaacat--ttttgtctttgctaCCTAAGTCTTAAATAGCAATGTTT-TTGATGCA--------ATCATTTGTGAGATACTAGCCATCTGAGGTCA---AAACCTTATCTACA-GCA-TCTGGAAAGAAGGTGACTCCAAAGGTTGTTAACAATGTTAGCAActggataaaggaa-----------------aaaaaaatcagatatgaCACTGGCCTAATTTTTCTGGCTAACAC----------GAAACAGGTGTTTGGGGCTCCTCTCTGA---------------CATACGTTTATACTTATATTTAACCATAAGAGCTGTGAAAGAAGCAACTTTCCCCTTTCCATTCTAGATTTTCCTTGATGAACCCCTTAAGAAGAATATACCTTtaacttttactttct-------------ttctttcttcc---tctctctctctctctcctttttttcttctttgttt------------------------------------------ttttgctatacag----------------------------ttcaggctga----tcttgaactcatgatgtac-cTCGGGCTG----GCACTG-AATtcgtggcaattctcctgcctcag----tctcgcatgtgctgagattatag-----------atgtgcacccac--------------------catgcttggcttcaaAGAA----------CATACCTTTAATctt----gtatttcaaaaatttatgctATTAAAGTTCTTTAGTTGTTTTTAGAACACTACAAACATTAATGGTATTCGAAGCAACTCCAAGAATTCACCTATAcaacagctggatgtggtggtgcaagcctataattccagcactt------------gggaggctgaggcaataagattaccac---aagttcaagggTATCCC------------AGGGTACATAGTTGGGTTAcacagagagctcaaggccagcgtgaacta-----------catatatagtgagaccctgtctcaaaa----------------------------gaaaaaaaa--------------------taaataagagtttACCTAT-----------------------------------CCAGGACC-----------------------------------------CCATGTCAGCTTTCCATTTAC----------TGCCTTTCTCCTAGAAAGCCATAGTAGCAAGGGTATCATATCTAGCCATTAGTCCCCTAGtcaccttttcttttcctttg---------------------------------------------------tttgagatgggatcttgctatgtT----------------AATCTGGGATCAAGAAA--TCCTTCC--------------------ATAGGTGGGTGCTaag--ttgttcttttttatttttattgtactgaGAAATTCAAGGCCATGGTTAGGAAAGTTGAAAAGCCATAAAGTAGGTGTAGCCACTGCCCATACCTTCCCATTTCCCTGTTTGAAA-ACTTCTCATCTTGAATGATAGAAGCACAAAGTGCCATCTCCAGTATCTTCCAAAGCGGTACGCTGCAAGAAAAACCTTCAGGAGAATA-CAACTGAGGCAAGAAACTTACTCAACATAGTATGTGCCATACTGAGGGTCCTCTATTTTTTCCCAGCCATAAGGAAGCTctgtaaataaagaaaatttagtgaACTTCTAGattcaaaatcaataaaaaagaatccaTCAATGAGGGAAATTGTTTTATTATACAAATACTTGGGAGTCAGAAAGTCGA-AGCtca-ttttcaaagaa-caaacacaGTTAAATCTGAGTAGCTTGTTCAACAGGCAAGGCTTATCTAAGTAGGTAATTAGAATTTTAGGACAGAAGCTGACATTA

a score=8481
s chr3           104068645 328 + 160039680 TAAGAGTGATTAAGTGGGACTGTGACATGATTAAATTTATATTTGTAAAAGATATGGACCATCAATAACAGAGGAAGAAACAGATAAAATAGTATGATACAAAAGTAGACAAATAAGAAAATCTTTAATAGAGTAGGCAATGAATTACAAAGGCTGGAACTAAGGCATTGGTAGTAGGAATGATGGG----------AATGGGCATGTAGCAGAGATAAGGAAGTGAAATCTGGTTACTATGGAGACTGAGGGAAGGAAAGAGTAGGACAGGAGGCCTACG-TGGTCCTCAGTTTCTAGTTCTTCTGGCATAAAAATGATAGATGAGCaattacttgtt
s HiC_scaffold_1 114487724 330 - 233722169 TAGAACTGAGTAAACTGAACTGCAATGTGattaaatttatatatgaaaaagaCTATGAGTGTCAGCAATAGAG-ATGAAATAGCTGCGGAGTTACAACAGAAGA-TATGGAGACAAGTAAAACACTAACAGACTAGACAAGAAATTACAGAGATTGTAAGTAGGGCAGTGGTAGTAGGAATGATGAGATGAAATGCCAATAAGTAAG--GCAAAAGTAAGATGGCTTAA--TAACAACTGTGGGAACTAAGgg-aggataaaacaga--agaagGCTGAGACCATTTCTAGGTATTTGGTGCTTCTAGAGTAAAAATGATAtacaatcaaatatttatt

a score=18304
s chr3           104070251 1089 + 160039680 TAAAATAGA-GGTAGATACCTTAACAAAAGATG----TCCTTTAAAAAAATTTGTGAAAAAAG----------GCTGTAGGG----TCATAGCCAAGA--AGTATCTTTACTTGGGGACAGGAGAGACTT----GAATAACCTAACTGTCCTCTTCTGTATGAGAAATGGATGCATCTTCCC------AATTGACTCAAAGAAGTAAATCTATTCTTGGCTTATCAAGCAGCTGGATGGCTCTAATGCCCATGAATTTATCCTTTTCCTTTTTATTTTC---AAAATGAGATTTTTCTTATTGAAATATATGAATTAAAACTACTTTCTCgctgggcagtggtggctcatgcctttaatcccagcacttggggggggcagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggcaacacagagaaaccctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaccaaaaaacaaaacccaaaaccaaaccaaaccaaaAAACTACTTTCTCATAGTGTAGGTGTATTCATTTGCTAATTTTCTATTATCATTCTTTAAGCTCCACAATGAATTCAACACTCAATAT--TTATAAGATGTCTTTGGCAATTTAATCTTAATCTTTCTTTCATCAGATAAGAAACG-GGGTGGGTTGAGAGTATAATGGAATTCTGATGTTGTAGTTTTAATATAATTATTTAAGCAAAAACACTAATTACTTTATTTGAATGGAAGACAAATGTGCT-CATCAGTTAAATCATCAGAT--AGTGTGGAGACATAGATT-----------TCAGAAGAGCAGTAAAGAAAGGACAAG-TTTAGAACTGGTGGAGTTTTCCT---AAATCTTAAATGATCAGTCAATGGCAAACAGCATCTTAAACTATAAA-------------------------------GTTTCAAATATTATTTTCTTTTCAACATGTATACT-----CCATGATAGAGAATACCAGTGGGAGTCAGATATCGTCTATTC---------------------------TTTCTCA---TGGAGGGAGACAGAAAGTGCAGAGAAAGTGGTCAGGGTTGA-CAAGCATAAAACAAAAGAAGCTCAAGGTTCTAAT-CATGACCTCCCACCAGATTACAGGCAGGCAATATTAG-AATCTACATCTAGTTGTA
s HiC_scaffold_1 114488449  965 - 233722169 TAAAACAGAAGGTTGAATCCTTAGGAAgagatgacttttttttaaacttagttgTGAAAAAAATTATGTGGGAATTATGGGGAAGATCAAGACCAAGAGAAATATGTTTACT------------ATATTTATAAGCATGACCCA-CCATCTTTTCCTGTGTTAGAAGCTGA-ACATTGTCCTTTAAAACATTGATTCAAA-AGGCAAAACTATTTTTGGCTTATCAAGCAGCTGGTTGGTTCTA-TGCC----AAtttgtccttctttctttttctctccccaaAATAGGATTTTTCTTACTTAAATGTATGAATTACAATTGCTTTCT---------------------------AATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGAGCTCTATTCAGTTGGTAATTTTC----ATCACTCTCTAAGCTCCAAAACGACATCAACATTCAATACAGTTGTAAGCTgcctttaataa---aaattaaatctttctttGATGGGAAGGAAAAAGTGGATGGATTGAGAATAGAATGGATTCTTGATGCTGTATTTTTAAGATAACTACTTAAACCAAAACAccaattat----tttgaa--gaagatAAATATGTTATATCAATTAAACCATCAGATACAGTATAAAGACATGGGTTGGTTCTGAACATCAGAAAACTGGGAAAGAAAGGACAAATTTTAGAACCTGAAAGGTCTCCCGAGAAGATCTT-AATGTTTAACACaagacaaataatattttaaaatataaaattgttataaataaataaaaataaaatgctcattTAGAATAGTATTGGCTTTTCAGCATCTACTCTGCAAAGCATGAGGGAGACTATTA-CCAAAGTCGTTTATAGTCTATCCTGAAAGTAGACTATTACAAGGCTGCTGTCTCCCAACTGAGGGGGAGGCAAATTGTACAGAGAATGGGGTAAAGCCTGGTTGAGCATAAAACAGAA-AGGCTCAAGGTTCCACTGGATGGTTCCCCAACAGATCAAGTACAGGCAGCCTAAGAAAGTTGTACCCAGTTGTA

a score=6014
s chr3           104073679 1104 + 160039680 AAAATAAATTCCAATGTTTCCTTCTAGTATACCATTAGACAGTATGAATACCAATATCTTGGAGACTGCTGGTGCTAAGGATATGTCAGGAAAGCGGAAGAGCAGAGAGGTAATTCTATACCGA----AGCCCCATCCCTTTA------------------ATCCTAGAGTACAAAGTATGG----------------------------------CAGGATGACATCAGGTG--TGAAGCCTGCCTAGGCTACACA---GCAGCAAGTT--------ATGTGTAAGACCC--------------------------------------------------------------------CAAGGGCACACATATATGTGTTCAAAGTAAAATTGTTTCAGGTTTTCTATATGCTGTGAATTTTTGACAACATTTAAAAAATAACATA---GTAAAATGAAAACAAAACTCACCAACCTACAGAACTGAGAGTTATCTGGGTAACAAGA-----AGAGGCTAAGAAGCAAGAATTGCTAGAGcag-tggttctcaa-----ccttcctaacactgtgaactttaatacagttcttcatgctgtggttaaccccagccataaaattctgtcattgctacttcataat-tgtaattttg----ttatggctatgaat----tataatgtaaatgtatgatatgcaggatatgtgctatgtgacccctgtgGTTGAGACTCTTTCTAGAGCCTTGACCTAATGCTCAGGAAAATGGTGTCTATGAGAGACTAAAGATGTCAAACTTACTTTTAATGTGCATTTGACAAGCCACTGAGACAATTAAAAACAGACTCAAAAGCAATAGGAAGCACAGAAATCTGGCTCAGAATGAAGGGCAACACTAGAGTTTTAGTGGGTGAGCCACTGGCAGTTGATAG--AGTAAGAGGAACAAATATCTCCCACCAAAGAAATC-AGAAAATGCAGAGAATTTAGTAGAAATTGAATTAGGGAGTAGGAAAGGCAACAAATTGACAAAAAAACAGAC-------AAGGACTAAGTTCATACATCCAATCTGAAAGGTCATTTTCTACAGTATTATATATCTTAGTTTGCTTTACAATGGCTAACTTCACCATCACAAAGAGCTTACTATGACAGACAGCATTATTGACAAGGAAGATACAATAAAAAATATTGTTTTTCCTTAATGAAAACACAGGGGCtg---------------agcaagggtgcctgcc-cacaagcctgcccacctgagtttcattct
s HiC_scaffold_1 114493540 1141 - 233722169 AAAATAAGTTCTAACATCTTCTTCTTGTATGCCAATAAACGATTTGAGTACCACCATTTTGGAGACTCTTGACATAAAGGAAACA-CATTAAAGAGTAGAAGCAATTATGGGAATAAAGACTGAGAATaattccagtgtataaaaatgtaaaggaagatATACTATAAAGCAAAAAGTGTGGAAAAAGCATGGGAAGAGAGGACAGATGGACAGCTCATGGTGTCAATAACTGAATGTAGACCGGGGAGGTAGCCCAGTGGTAGCATGTTTGCCCaccatgtgcaaggtcctggatgTGATTTTTAGTattggggagaaaaaaagaaataaatgccaCAAAATGTTAATTGTACTTTATCAGAGGTAGACGTACA--TGTTCACTGTAAAATGCTTTCagtatatttatacac-----acatatatacatatttgaatAATAGTGTATtggcaaaataagaaaaagaaaaagcaac---agggcttaaaaagtataaagagaagaagagaaatagaagcaAACACGCAAGGATT-TTGGCTCAGATGATTATGAAGATGGTATatataaaatggaaga----aataca---------GAAGTGG-------CATTAGGAAAAagatgtcacatttagttttaaatatgttaatttgGAGCCCGGGGATATAACTCCCATATAGAGCATTTGTCTGGCATG------------TATAAGGGACCTGGAGGTTAGCCCAT---tagcacccccccccaa--------------------aaaaaaccccaa-------aaaactgtGTTCAAAGTGC---TAGCAGACTTC--------------AAAGATTCAAAAgcaatagaaaatatgaaaatacaattcAGAATAGAGGATAATACTAGAAATT------------CACTTAAAAGTGCTTGTAAGTGATGATGATAAATACCtcctacaaaagaaaacaagaaaaggcaGAAAACT------GAACTAAAACAATTAGCAGGAAAAGGAATACAGT-CCATCAAAACAGACTGCCCTGTAAGACTAATAGCAT------------AGTAATCAAACTCTGCAATATTATATAATCCATTTGccttcacaatggctaatttcaC-------AAGAGCTTACTATT---GAAAGTCCtatagacaaagaaaatgtagcataaaa-atcatttt----------------aagggctggggatttagctcagcagcatgaactcctgccttgcaagtgtgtggtcgtgagtttgatcct

a score=15304
s chr3           104079838 425 + 160039680 AATGAAGTTGTACCTAATTTATTGAATATTTA----GAATTTTAAAAGTTTGACTTTAGGATATACATTT----------------AAAAGCAGCAGA--------------------------------GGTGTTTTTC----------TCTTTTTAG-----GGGCA---GTTTT-----AAAAAAACT-----CCT--------------ATAAAATTAT--ATATAATGACATAATTATTACTATCAGCTAATTATGATTACAATCCATAGCTGGTGTGCTTATGAATATTATTATTTGCTTAGGCTTTTGGAAAACTCATTATCTAAGCAAGAAGAGTGAGGAAGGATTAAGAGAAAAAGCCTAATATGAAAGGTTTCTGAATCTCTACCTCCATCTTCACAGTCTTCAGGGGCTTTGGCTTTCTTGCAGAGACGAGGATCCAACCAGGTGGTTGTCTTCGTATTATGACTGCAATAGGATaaagatctcaattagaaatagt--------------aagatattgcaaa
s HiC_scaffold_1 114499681 516 - 233722169 AATGAAAATATGCCTattatattgaatatttatttagaaCTTTAAAAGTTAGTTTTTAGGACAtatgtttttactcttttttgggggaaggtaccaggaattgaactcacaacctcacgcttgacAGTTGGGtactatgccactaagctatatccttagccctaGGACAtatgtttttaaagcaaaaaactatAACCCTCacagaagagataaataaaatttctcataaaattatataattactaCGGTGAGTTCTTTATGAGCGTTGTCCACTCTTCG-GTGCTTATGCACTTTAT-----------GGTTTTGGAAAAC--ATTATCTAAGCAAGAAAGGCAGGAATGGATTAAGAGAATAAGCATgata--aaaagtttctgaatttcTACCTCCATCTTCACAGTCTTCGGGGGCTTTGGCTCTCTTACAGAGACGAGGATCCAGCCAGGTGGTTGTCTTGGTATTGTGGCTG---TAGAATAAAGATCTCAATTAGAGACAGGATTCAAGAGGGAGAAAGATATTTCAAA

a score=15866
s chr3           104081459 287 + 160039680 AATAGGGAGAAAAGTATCTCAAAAGCAAAGATTCAAAATAACTGAAAAGCAT--GACATTAGATCATTTATCTCCTACAGGCTCCATCTGTATTCCACAGACTCAATAACCCTATTGTTCCCAATCCATTGCTTGGAAATTGCCATAAAGGAAAGGTAATTCTAGAGGCACAAGTTTGAGAATGAAGAGTTTAAAGAAGAGATCAAAAGCCAAGTACAGAATGATAAGCTTATTT-AAGCAGTC-AAAACATTTCAAAGGGTGGGCACATAGCCACATGCTGTGTATTGCT
s HiC_scaffold_1 114500174 286 - 233722169 AAGAGGGAGAAAGATATTTCAAAAGTAA-GCTTAAAAGTGACTGAAAAGCATAAGATGTTGGAACAT----CTCCTACAGCCTCTATTTGTATCCCTCAAATTCAGCAACTCTATTGTTCTCTGTCTGTTACTCTAAAACTGTCATAAAGGAAAGGTAACATTAGAGGCACTGATTtgaaaatgaagattttaaagaaaagatcaaATGCCAAGTACAGAATAATACACTTATTTAAAGCAGtcaaaaatgtttcaaagagTGGCCACACAGCCACATACTATGCATTATT

a score=26964
s chr3           104085146  921 + 160039680 AGATTTCAGTTTATTCTCCTAGTGACAGGGCATGCTGGAAGAAATACAGACATTTGCTTACTCAATGAAGTAGATCATTCCTGTGTCAGTGTAGGCCATTTCCCAGTTTTTGGGCAGCGGTTCCAGATTCTCATCTCTCATCATATAATTTCTAAAGTCCATGGAGCTATTTGTTTGGTTATAACTTGG-AACAGTCTTCATCCAGCAGTCAGATGTCTCAGAATGCATCTCTCTAGTTTCTGTCATTGTTGAAAACAGAATGGCAT-AAAGGGTAAAGTTT-----------------GCTTGTTT-TCTTGAACAAAATGCCAAG---TGCATATACATCA-ATGCCTATATAACA----------------TTGCAATTAAATATTGTAAATGTTCTTATCTATTATGTATGTTTTTATTAACTTTGAAATAATAAAAATACTCAGGTTTTCTCCATTTTCTAATTAAAATGAATTCT----------ACTCATCTGATGCTAGTCTGGGAAGGCAG--------------------------------------------------------------------------------------------------------------AAAaa-------------------------------------------------------------------------acaaacaaacaaacaaac--------aaacaaaccaaccaacCACTAGAATCAATTCAGGAAGTACTGTACTATGTACAGCAGCACAGTACTTACTTACACAGACCTTTtatgtgtcaagctctattttaaatgcttaacatatattaactcataatcctcatagcaacatcattattatcaccattct------atagatggaggaaaccaa-gcacagagaggttaagtt--ttcaggtcacacagccatcaaacagcaaacccaggacttgactctaagcagcctgcgcttttgactgctatactaAGCAGCTTTATACATTTTTAACACAGGtatttaaataatcatttatttttaaatg------------------------------taaatataattCTG--GTAATACTAG-------------------------------------GCAAATTAAAACCTGGTTATTGTCTAGGGAGTCTACAAGTAATGCAGTAATACAGTTAAAACGTTCCTAGAACTT
s HiC_scaffold_1 114502726 1206 - 233722169 AGATTAAAGCGTATCCTCACAATGACAGGGCATGATAGAAGAGACA---GTATTTGCTTACTCAATGAAGTAGATCATTCCTGTGTCAGTGTAGGCCATCTCCCAGTTTTTGGGCAATGGttccaaattttcatttctcatcaTATAATTCCTAAAGTCCATGGAGCTATTTGTTTGGTTATAACTTGGAAACAGTCTTCATC---CAGTCAGATGACTCAGAAtgcctctctctgttttctgccATTGTTCAAAACAGAACAAGGTGAAAAGTTGAagtttctgtcttctttcaacAGGTTTGTTCATTTCTAACACAGTGCTAAACATTATTTATacaatatatacacacatattatttataatttatatatttacaattatgCACTATAAATCTCCTTGTCTAAGATACCCATGCT--CTGCACTTAAAATAACAAACATACtcaa--ttctttcaatttttcattgATATTTGCCCTGCATAGCGTAACACTTTTGATGCTAATATGGGAAAGCAATAACAGGCCAggtgttgtggcacacacctataatctcatttattCAGGGGGATCCCAGTTTGAGGACAGtgtaggcaatttagcaagagcttgccttaaaataaacaattaaaaagggctaaggatgtatctcagtggtagaatgcttgcttagTATGAgtgaggacctgagttcaatccccagtaccacaaacaaacagacaagcataaaacaaaacaaaaaaaccaa-cactACAACTAATTCAGCATGAATTCT---------AACAACATAG----CATTTATATAGTTCTTCTATATGTTGAACTCTATTTTAAATGCTTAATGCTTATTCATTCACAATCATCATAGCAACCCTACATCTACTATAATTCTTGTTTAACAGATCAAGAAAAGTAAGGTACAGAAAGGTTGACTCAGTCAAAATTACAGAGCCATTAAATAGCAAAGCCAAGATTTGAATGTAAGTGGTTCACAGCCTTAACTACTATACCAAACTGCTTCATACATTTT---AACAGGCTTTTaaataataccttttaaaaaaatactcaacactcagaGTATTATTTCCTCTTGTTAAATAATATTCTGTAgtaatattaaattctttttagaGTCCCAAGTTCTATAAGGTAGGTATGTATATTAAAA-TTGGTTACTCTCAAAGGAGTCGACAATTCATGCAAT--TACaactta----tttctaaaattt

a score=43496
s chr3           104088478 1817 + 160039680 TGACTAAACCTTTTAAAAAACAATTTTTGTCTTGACACCTAAATACACTGGCTAACTCATTTAACACTAAACATAAGTACT-GAGAAGTTAAAACAATAGCCGGATCTCGCTATCTGTAGGGG-GAAATAAACAATG------------------ATCATATAAGGCAAT------------------------------AGG--------TATATA-----------------------------------------------------------------------------------CAAGGGAAATTTTAATAAGTGATGAGGGAAA--TTGAAAATGTTTTGGGA---TCATATAGAGATAGG--CTGCAAATCCAAAGACAGGataaacattt----acttccttctatatgccaggtactgttcttggtgtagtagatacagtgatgaa-aacttaacctccccaaaattccagtattcagagaattcacatactagtATTCCAAAGAAAATGGCTACAA-AAATAACACTAA--------TGTCCATCTTTTTAAGGTCTGGCTTCCCAGTC-CTCTCTCAATTA--AATGTAAGGACCTCCTGGACATTACAAATTTATTCAGGGACACTCA----GAGTAGATTCTTCACCCTCACATTTTTATTTTAATTCAGTGAGAAATATGAAAGTTAAGCAAAAGATACAAAAAATATCAATTTTATTTGCAAATTATCTTTGAGTAGATCCAGAATTTAAATTAAAAATATTGCTAATGAA-----CTTTTCAGATAATTTCTTCTGACATACCTCCAAAGTCTATG----TGCTTTGGGTTGAAGGCTGTATTAAAAAACC----AATTTTGTTTTAATCCTGGGAAGT-AGAACTATGCCAGAAAGATTCCCGTATCCCAGCATTACAAGTATTTCAG---ATAAGGTGATGCCACATCATT--------AATGACAGCTTACTATT-------------GCTAACTTATATTAGTTTACAAGATGACCCACAGAAATATACATTGTTCCACACA---GCTTTCATAGAGAATTAGAATCCTAGCACCTGCTCTGCATATAGTTCAAGAAAATCTTTAGGATTTCAATTCAAGATTA-----AAGCCAATCTAAG--ACCAATCAGAAGTTGTTAATATGTTTACAAACCCATGCTTCCGCTGCCATTAACAGCTTCTTTGTCCTCATCTTCTTCTTCTTCAGGGAGAGAGCTGTCCATCCTTTCCATCTTGCTGACAGATGTGGTTCTTTTTCTTTGGGATTCTGTGTCAAACTCATTGTCAAAGAGGACCTGATCAACTGGATCGGGCTGGAAAGGACTAGGCTCTGCTGGAGGCTTGGGTGTGCCATAGAAATTTCCTGTGGTGTACAAAATGATGGCA----------GCTGAAA-------------GTACGAA---------------------------------------------------------------------------TGCTGACCAAGC-------------------TTAAA---------------------------------------------GAATGCCTCTGTCACTGACTAAAAGGC---CAAACA-------------------AAGCATTCTG---TATGACTAATTTCTCATA---TCTTGTCATACGTTAGCT--ATCATACTAAAACTGCTCA---------------------TATTTTAAT--TTTGTTTTATAAAGTTTCTGAATTAGGGCTGAATTTGGAAATATAAAAGCATTGA--TTCTCTTATGAAATAATGAAAGACACAAAAGGt----atataaaatg-------------aaataattttattctaatgtataaaatgaattattttaCT---------AAAATGAGGATATATACAAAGGCTAAGAACTATTTCA----TATAGGAATATAAGCTGTTGTGTAATTTTAAAAAG-CTTTCTGCACACTTGAATTATATTACCTGACAATTTATTGA--AGAGCCATTATATATCAAGTTCTATACTAGTATACACTCAGAAAAGCAAGCGA-TAGTTTAATGTGTTTTTCTGAGGATCTTTGATTTTTCCAGTACCAGTACTTGGTCAAGGTAAGAATAAAAACAAATGAAATAACCTTC--AGTTTGTTATGCAGCTTGTACTGAGCAGGCAGGCACCATGGGAAAGTGTTC-AGGAGTCTAGCTGTCTCAACAAT
s HiC_scaffold_1 114507883 2212 - 233722169 TAATTAAATCTTTCTAaacctatttttattctttatactcAAACACATGGAGTAATTCATTTAACATTAAACACAAGTATTTGAGAAGTGAGgacaataaaatggaaacacaatCTGGAGGGAAGAAATAATTAATATATCGAAACAACAAATATACTACATGAagcaattttatgttatttttgttgttcttttgagGTAGGGGACTtactatatagcctaggctggctttgaattcatgatcctcctgcttcagtctcccaaatgctaagattacaagtgtgtgtcagtAAACCAGGCCATGGCACATTTTAGtaactaatgaaagaaaaattcaaagtgcTTTAGGAAAGTGATATGGAGATGGATTCTGAAAATCTGGagacatgataaatatttttgtagttcCTACTGTGTTCCAGGCACTGTTTTTGGTACGAGGAatacaaaaaggaacaaaacaagtgaaaaaaaatcccaacaatTAAGAAGTTTATGTTCTACTGTTCTGAATGGTGTTATCACAATAAACAGCAGTGAAATATGTCTGGCTGTCATTCTGAGGT-----TTTACAGTCATTCTCTTGGTTGTGAGCATCAGAGTTGCCTACGCAATCACTAATTAGTCAGGGATACTTAAATGGAGTAAATTCCTCTTCCTTGCTTCTGACTTTTCacttgatgaaaaatattaaagtcaaacaaaa-----caaaaatacaagtcaCATTTGGAACTTTTCTTTGAGTAGATTCagaatttgaattaaaaatattagtaaCAAATGACTCTTATTAGAAAATTTCT--------------AAAGTTTAAGCACTTTCTTTGGGCTGAAGGCTACATTATAAAacatctacattttatttttatcctgtaAAGTTAGGTTTAGGCCATCAGTAAT----TAATCTA-------AAATACTTGAAGCAACAAGGTTATggc-tattatttatttactaatgACTTCTGATTAATTAATTGAAATGGAAACAATTCATTTTAGTTTACAA-AGGGTCAATAGAGGTTTATATTGTTCCATAAACAATCTTTTCAAAACAA--AGGATCTTATCATTTGTTCTCCACATGTTCTATGAGCATTTTACTATTTTCAATTCAATGTCACTGGAAAGTCAGCCTAGAGTATCTGTTAGAAGTCATTCATCTGTTTACAAACCTGTGTTTCCACTGCCATTGATGGCTTCCTTGTCCTCATCTTCTTCTTCCTCAGGTAGAGAGCTGTCCATCCTTTCCATCTTGCTGACAGATGTAGTTCGTTTTCTTTGGGATTCTGTGTCAAACTCATTATCAAAGAGGACCTGATCAACTGGATCTGGCTGAAAAGGGCTGGGTTCTGCTGGGGGTTTAGGAGTTCCATAGAAGTTTCCTAAGGTGGACAAAATAACAGCACAACCCTAAGGCTGACATGACCCAGGATATGTCTGAACAACATGACCTAGCATATgtctctgctttgcttttttttttttttgcagtaccagggatcgaactcatgacctggtacttgccaggcaggtgcttatgcccatgagctaaacccctagttttgctttgctttttacaCCAAAAGGTTTGAGTATCTGAATG--TCTGCCACTGACCCAAAGGAGTGCAAACACTatcaggagaggaagaagaagcagTATGAGAAACAACTAATTTCTCATGTGCTCTTCATATAagtaaaattcatcattttaataCTATTTGCACCATGGCTAGGAAGTTGATTATTTACATGGTTTGTTGTACATGGTTTCTAAATTAGGGTCTAACTTGTGAATTTAAAAGGATTAATGTTTTCCTATGAGAT--TAACTGGCATAAAAAGTGGGAATAAAGGATGATGAAGCTAACTCAAATAATTTC-TTCTAATGTATATAATGAACTAATttgataaactttaaaaaatgtggcCA-ATGATAAAGCTAAAAACTAATACAGTTTTGTAGAAATGTAGGctg-tatgtaattttaaaaagtttttttggaCATTCTAATTACATTATCTGACAGTTTACTCAACAGACACATAATAAGCCTAATTCAGTATGAGCTTTCTCTCATGAAAGCAAGAAAGTAATC-------TTTTCTTGAGGATCAGTAATTTTTGCAGTAAAAACAAATGTTC-----CAGAATTAAAACAACTAATAT---CTTCTGAATTGGTCATACAGTC---------------AACACAATGTGAAAGCATTCGATGAGTGTAGCTACATTAACAGT

a score=18906
s chr3           104094974 471 + 160039680 AATAACTTTTTAAAAATTGAA--TTTACTGATGAAATTCCCTCTGAAATGATTCTGGTTATCTGGAGGTAGTTTTCA------------TATTTGGGGACATACCATCATACGTTCCACTTTCTAACAATGCTCCGCTTTCTTCCAGTGCCTTGAATTGTTCAACAGAAATGAAGTTATAATCCACCCCTGGGACTTCCCCATCCCTGGGAGCCCTTGTAGTGCCTAAGGAGAGAAGAAAAAAAAATACTTGTAAAATACTTTTTAAAATAC-AAGTACTCAGAATGCTATAAAGTTCAGTCTAAGAAGACTACAAGGAAG--ACAAGTTATTTAATA---------------------CATTGTATC--TGATGTATTAAAGTATCATAATAACTATAGGA----GAAATACACTTGAATAAA--------ATAGTAATAAAATCCATATCTATAAAAACTCTACAGTAAGTTTAGTACTACTAAGGACTTAATTTCCTGGCATACAGttt----ttttttttaaa
s HiC_scaffold_1 114514410 520 - 233722169 aagaattctttaaaaaatagtgttttcCTCATCAAATTCCATCTGCAATAATTTCAGTAATCTGAA--TAGTGTTCAGGATATGGTTAATATTTGGGGACATACCATCGTAAGTTCCACTTTCTAATAGTGCTCCACTCTCTTCCAGTGCTTTGAATtgttcaacagaaatgaaattataGTCCACCCCTGGAACTTCCCCTTCCCTGGGGGCCCTTGTAGTgcctgaggaaaaaagaaaaaaaatg--ttgtaaAGTGCTTTTGAACTTacaaaatattcagaata-tagaAAATCCAGTCTATACAGAATACACGGGAGATACAGACTATTGACTATTGCTAGAATGAAAATTTAGGCAATTTAACATTAGTATCTGAAAGTAGGGTAATAAATGTAGAACaagtaaatatatttgaataaaatctacaGATAGCCATgaattacaaaattacaaaaatccTGAAATAATTTTACTGATA--AAAAGCCCAATTTCCCAAGATTTAatacttaattctttttaaa

a score=51751
s chr3           104105664 4242 + 160039680 [encoded data, 4904 characters]
s HiC_scaffold_1 114542084 4095 - 233722169 [encoded data, 4904 characters]

a score=21439
s chr3           104114942 699 + 160039680 AAAATAAACTTAAAATCATTTTGGACAAAACA--------------AAATTTGCTTT-AAAAGCTGTATTTCAGGAAGATTGAAGTAAAATAAAGCCTTCCCACTAGACTAGAACAGAAAAAATAAGTACTGAATAAACTAAGCTGCATTCTCTCTTTTAAACTTTA-GATGGGAGTATGGAAA----TTTAATCCTTCTTTTTTTT--------------AATCC--GTATTTTTGAAGTGCTAACCTG-----------AGGCTATTTACAATTTTTTTCTT-TGACACTCACATTGGGAACCATTAACAAACCTGTCATAACACCACATAACTGATGCCTGGTTGGCACACCAGTAACTGAGTCACAGCATTAGTACTTCATCCTCGAGACAGGAGAGTACAAAGCCATCTATTGGGTCCTGTCA-TTTCCATGAAAATAGCATAACT-GGTTCAGCTATCTTTGCAAATCAAAGTTATCTGCTTCAACAAAATGCCAAAGACTTGAAATAAAAGATC--------------------------------------------TAGATAAAAAGGTAAAAT------CAGATGTGTTTGA----AGTCTTAACCC--AAAAAGATGAGAACTGAAAAAGTAA----ATGGTATAAAAGGCTCACTTATGTAAACAATGTCAACTTCTTATTTCAAGCAGTAGTAGAATGTTGTTAATTAACTGCAGGAAATTTTTCATAGGAA-AATTCAACAGGATCTTTTCCTCTGGTATCTTTTTAAAATAGCAACTTATGGAATTCCTTATAAA
s HiC_scaffold_1 114551847 779 - 233722169 aaagtaagatgAAACTCATTTTAGATaagacacaacaaaataatacaaatttccttttaaaagtctTATTTTAGTAAGATTAAAGCACAATGCAAACTTCCTAACAGAGTGGAA-ACAAGGAATAAATCAtcaaaag----------------ttttcaaaactttttgaCAGGACTATTggagatgttttattttgttttgtttttgtagatttAGCAAAAACCCTAGTATTTTAAAAGTGCTACCTAGTATTTTAAAAGAggctattttcaattttttctttgtgaCACCTACTTCAGGAATCATTAGCAAACCCATAATAGTGTCAGATAACCAATGCCTGGCTGGCATACTAATAACTGAGTCATAGTAATAATCCTTTATCCTTCAGACAGGAGGGTACAAAGCCATTTATTGTGCCCTGTCGTTTTCCTTGAAAATAGAATACCTGGGTTTAGTAGTCTTTGCAAATCAAAGTTACATGCTTCAATAGAATGTTCAGGACTTAAATTGGAAGATCCCTTACCAAATTTCACTAGAACAGCTGACACTTTCCTACAACAGTTGATAGATaggtaaaagaaaatacagatatatTTGATTACTGTGCTTACCCAGAAAAAAATGACCATTAAGAAAATTGTCCCGTATTTTAAGAGGATTCATTATGTAAACAATCTCAACCTCTGAGTTCAGTCAGTAGGCTGATA----TAATTATCCAC--------TATTACAGGAATAATTTAACAGTCTCtctatttctg--attttctttaaacAGAAATTTATGCTAATCCTCAGAAA

a score=25403
s chr3           104129350 979 + 160039680 ATAGTAAAATAGCCTTTCATCACTGCCAGGG---GGGTCCATTCAT-TAGCACTGTT-------------GTAACTTAAAACTCTCACATAATATCTGGAGCCCTTAATGCCCT-----TAATGAAAGAGGATGTCCTCAAATTTCTTATAGCAAAAACTCACTTAA-TGTCACCAACCTTGACTTCTAGATAGAATACTGCATCTACAAAAGGAAAAATGA--GTTTCTATGTTATAGAGCTGAAAAGGACCTGGGAAAAGCTGCTGCTAGTAGCTTGAGCCATTTTTGTCATTGGGAACCCTGTTCATCTCAGCAGCATCTCCTCCAGGAACACTGGCC-TCCAGCTATGCTTAAGCTTGCTGCTGCCACAGGAACCACTCCAAGTGTTTCACTGGCTACTTCGCTCCTGAGACCTTCACTAACCACATCCAAGCAGCTTTCAGGTAACCATATGTTCTGGTGGTGAGTGATCCCTTGAGCAAGCAGCAGCCCCTCACAGAGGCATTT--AGTCTACCTGCCAACCATCACTCTGTATAACAAGGATTCTCCTCTATGCTATGTGGACATTGAGTGAACTTTTATGCTCACTCAGTGTTGTTTCTGAGGTAGTGATTACTGGTCCAGGAATTCTGCATATGCATAGCACCATTCACATTGATCCACCTCTACAGAGATCCTGAAGAGACTGAGAAGAGCAGCCCACTGCTGACGAGACTGTGATGAGGTAGGAATTTCAGAGCAAATGAAGGACACTAGCTCC--TGAGTTCCCTGCTAGTGAGGAAGTGGCTAAATTGTCTGAGGATGTATAGATGCCTTCTGTGCCTGTCCAGCAGTTCTCTAATGAAGGCTCGAGTGTCCAGCC-ATCACTGAAGACGGGTTTACACTCCTA-CACTCAGGTCACGGAATGTGTCGG---CATCACCACTGAGTGATTGTAAGCCAATCTGCAGACACTACA-CAAAATGGAAAGGAGGAGGGTGGAAAGAAA-----CAGTttctaaaaacaaa
s HiC_scaffold_1  25792920 815 - 233722169 ATAACAGAACA--CTTCCCGTGCTGCCCAGGCAGGGGTCCATACATACGGCGTTGTTCTTGGTTTTCATTGTAACTTAACATTC----ACAATGTCCGGAGCCCTTGATGTCCTGCAAATGAAGGAGGAGGACGTCCTCAGATTCCTTGCTGCAGGAACCCACTTAGGTGGCACCAATCTGGATTTCCAGATGGAGCAGTATATCTACAAAAGGAAAAGTGATGGATTCTACATCATAAATCTGAAGCAAACCTGGGAGAAGCTTCTGCTGGCAGCTCCAGCCATAGTGGCCATTGAAAATCCTGCCCACATCAGCGCCATATCCTCTAGGAACACCGGCCAGCGGGCTGTGCTGAAGTTTGCCGCTGCCACTGTAGCGACTCCTATTGTT-----GGCCACTTCACTCCTGGGACCTTCACTAACCAGTTCCAAGCAGCTTTCCGAGAGCCACGTCTTCTGGTGGTTACTGATCCCAGGGCAGACCACCAGCTCTTCACTGATGCATCTTACGTCAACCTGCCTACAATTGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGATCAAGGAAGAATTTAAGGGCAAATGGACTGCACCAGCCCCATTAAAATTCTATTCAAT---------GCTGCTCAGCCTGAAGGCATGCAGGTGCCCTCTGTGCCCATCCAGCAGTTCACTACCAAAGACTGGAGTGCTCAGCCGGCCACAGAAGACTGGTCTGCATCCCCACCGCGCAGGCCACTGAGTGTGTAGGAACCACCACCACCGAATGGCCCTAAGCTGTTCTGGAAACACTTCAGCAAAGTGGGAATGAggttgataaaaaataaaataccagtttctaaaaataaa

a score=17568
s chr3           104129355 974 + 160039680 AAAATAGCCTTTCATCACTGCC---AGGGGGGTCCAT---------TCATTAGC-ACTGTTGTAACTTAAAACTCTCACATAATATCTGGAGCCCTTAATGCCCTTAATGAAAGAGGATGTCCTCAAATTTCTTATAGCAAAAACTCACTTAATGT-CACCAACCTTGACTTCTAGATAGAATACTGCATCTACAAAAGGAAAAATGAGTT--TCTATGTTATAGAGCTGAAAAGGACC--TGGGAAAAGCTGCTGCTAGTAGCTTGAGCCATTTTTGTCATTGGGAACCCTGTTCATCTCAGCAGCATCTCCTCCAGGAACACTGGCCTCCAGCTATGCTTAAGCTTGCTGCTGCCACAGGAACCACTCCAAGTGTTTCACTGGCTACTTCGCTCCTGAGACCTTCACTAACCACATCCAAGCAGCTTTCAGGTAACCATATGTTCTGGTGGTGAGTGATCCCTTGAGCAAGCAGCAGCCCCTCACAGAGGCATTTAGTCTACCTGCCAACCATCACTCTGTATAACAAGGATTCTCCTCTATGCT----ATGTGGACATTGA------GTGAACTTTTATGCTCACTCAGTGTTGTTTCTGAGGTAGTGATTACTGGTCCAGGAATTCTGCATATGCATAGCACCAT-TCACATTGA-------------------------TCCACCTCTACAGAGATCCTGAAGAGACTGAGAA-GAGCAGCCCACTGCTGACGAGACTGTGATGAGGTAGGAATTTCAGAGCAAATGAAGGACACTAGCTCCTGAGTTCCCTGCTAGTGAG---GAAGTGGCTAAATTGTCTGAGGATGTATAGATGCCTTCTGTGCCTGTCCAGCAGTTCTCTAATGAAGGCTCGAGTGTCCA-GCCATCACTGAAGACGGGTTTACACTCCTACACT-CAGGTCACGGAATGTGTCGGCATCACCACTGAGTGATTGTAAGCCAATCTGCAGACACTAC-ACAAAATGGAAAGGAGGAGGGTGGAAAGAAA-----CAGTttctaaaaacaaa
s HiC_scaffold_1 143059129 967 - 233722169 AACACAGCGTTTTGGTGCTGCTCAAGGAGGGGTCCACATGGCACTGTTTTTGGCTACTATCATAACTTAAAA-------GAAATTTCCTCAGTGCTTGGAGCTCTTGGTA---------GCCTGCAAACTCCTTGCTGCAGGAACCCATTTAGGCCGCACCAATCTGGATTTCCAGATGGAGC----------CAAAAGGCCAAGTAATTCGATCTACACCATAAA--TGAGAAGTAGCAGTGAGAGCAGCTTCTGCTGGCAGCCTGAGCCACAGTGGCCACAGAAAATCCTGCTGACCTAGGAGTCATTTCCCCTAGGAGCCCCAGCAGGGGCCTGTGCCAAAGTT---------CACTGGATCTACTCCTA---------TAGCTG------------AACATTCGCTAACCAGATCCAGGCAGCCCTCTGCTGTCA------TTTGGTCATTACTGATCCCA-GGGAGACCCACAGTCCCTCATA----TCTTACGTCAACCTGCCGACCACTGCTCAGGTTAACACAGATTATCCTTCATGTTGGTGAAGTGGACACCGCCATCCCGTGCAACAATAAAGGAGCTCACCAGTGAGTTTGGTGTGCTGGATGCCCTCATGGGAGTGCTGTGCATGAGTGGCAACATCTCACGCAAACACCTGTGGGAAGTCACGCCTGATCTCTGCCTCCACAGGTATCCTGAAGAGATTGAAAAAGAATGAGCTGCTGCTGAAAAGATGGTGACCAAGGAGGAATTTCAGGGAGAATGGACAGCACCAA-TCCCGAGTTTGCTGCTGCTCTGTCTGAGGCTGCAGACTGGTCTGAGGGCATGCAG-TGCCCTCTGTGCCCATCCAGTGGGTCTCTACTG-AGATCGAAGTGCTCAGGTGGCCACAGAAGACTGGCTTGCA-GGCTGCACTACAGGTAACTGAGTGGAGAGGAACCACTGCCGAGAGGTCTTGAGGTGTTCTGCAGACTCTTCAACAAAGCAGCAATAAGAGTGATGGAAAATAAAGcattaatttctaaaaaaaaa

a score=28442
s chr3           104130555 1264 + 160039680 tctcaatatgttgtataggctatctggaacttctgagttcaagcaatcctcctacgtcagtttcctgagaagt-----------atatccactaccacacccagTGTGGCCTA-ACATTAAA-TATTTTCCAGAAATACTAAAGACCGCTGCTATCatctgctaaatgtttcttaaactcactcaattttccccatttcaacaaccactaacctactcaa---------cttcttttgctagattaaacaaatggcat----agcaggacttcctgttatcagcctcactttctaatgcagtataggtgattttctcatagtataaa------------cctcttctcttgaacagaatctcccaatggcatccagatgaatttcaaa--gcattgagatcccttc------tttataaggctcccagctttcttcttcagcc-tcatctactgagccatttctctatactccatgtccactctaattcctagatccctcatatattagattcaatcctgctcctaggg----tcttgaactcatttttccctttctctggaacacttttcccccaacactta---ccctggttgcct--catacact-tttcaaccccacattcat--ttgtacataaat-tcctttctttgaggaagtctttc-tgacttccaagttctaaggtatct--tgctcttgttttcttccctagcatgccacactccccttaACATATATATCTACATGTCTTACCACATCTACCTCTT-CTGCTGAATTAT-----TTGTCTGCTCTAGTCCCTATACCAGTCTGTACACATCAAAG--CAGGATGT-------GTACTA----CATACTAAATAT--------TAATAAAGTGCAACAGAAGAATTATTTTAAAGCTTTTGTCAGATGTAATAGCCTTTTTGATCTAATCAATTTTTTCTCATTTTAAAGC----CTCATCTTCTGAAA------------------------------------------------------------------------------------------------------CCTATA-------------------------AAAACATTTATTTTTATTGATTTTTCTACATTATCCAAATTATCCCTATCATTCATTTATCTTCTCAAAACTTTACATTGTAATAGTTAAGTGAAAACTGCAGAAGAAAAGT--------------TTCTACCTTCTGATCTCTACATGTAGCTCTCAAAAGAACATTTTACAAAGCAATTGTCCTAGACATT----AAAAGTCAATGTCATAAAAAGACACTCCCCCAAAGAGGGAGTGGAGGTGT------GTGTGTGTGCAGGAAGACTAATTT-AATAGACTGAGACATTAAGACAACTAAAATAAAAGTAGATCTTCAATGGATCTTGGACTTTTAA------AGACAGGAAAAAGA----TTTTTAAAAAACTATAAAGGACATTTGTTTGAACAAGGGGA
s HiC_scaffold_1 114565006 1484 - 233722169 tctcactatgctgctcaggctggccttgaatcgtGGGCTCAAGGGATTCTTGTACTttagcctcctgagcagctgtgaTGACAGATGtttgccaccatgctcagctcaacTAACACATTAAAATCTTCCCCTCAATCATTGATTACCATTA-TATTATCTACTAAACATTTCTCAAACATATTCAGTTCTTTCCATTTTAAGGACCACGAATCTAATCCAGGTCACCATCTTCTTTTATACAATTAAACCAGGAGCCTCCTGACTGCCACTCCCTGCCAGCAACCTTA-TTTCTAATGCAGCTAGGGTGACCTTCCCTAGGTATAAATCTGATCACATACCTGTGCTTTTGTGTATAACCTCCCA-TGGCTTCCAAATAAACTTAGAATAGCATCCAGATCCTTTAATGTGGCTCATAACACCTCTGGTTTTCCTCTTCACTCATTATCTGCCACCCCGGTT-TCCATATTCTGTGCCCACTGTAGTTCCTA--TTTCTCCAGTGTTAGGTCCTCTCCTGCTTCTAGTGGTTTTCTTGATACCAGTTT-------CTCTGGAATACTCTCCCC---ACCCCTAGACCCTTGACTGCCTGTCTTACATTCTTTCATACCAACATTCATATCTTTACAtggatattatttctttgaagaagCCTCCCATGATCTCCTAATTCTATGTAATCTGCCCCTCTTGTTTG-TTCCCTAAGACTCCATAATCTCTTTATCACATATATC--CTGGTCTTATCATATGAAACTATAATTGCCTAATTACAGTGCTTACATGTCTCAGTCCCTAAACTA-----CAAATGTTAAAGAACAGGAAGAACTTACAGTAgtaaaattacaataaatatggaggaattaataaaatgtaatagaaaaaaa---tcaaagcttttGTTAAGTAAAACAATCTTTTTG--TTAAtcgtattttcttttttataaaactaGTCTTATCATCTGGAAAACTCTATTcagaccatttatttatttatttggggggggatctttttcctttttatcggtaccagggatcgaactcacaactgcctgcttgcaaggcaggcgcttatgcaactgaactaaatccccagcccctaaatcatttatttttaaggattttcc-acattatcttaattatctctaattttcatttatcttctcaaaattttaagttataaaagttaaatgaaaactACAGAAAGGAAATAGTTTAACAAACTCTGCTACCTT-TAATCTCCTCATGCAGTTTTCAAAAGAATACTTTACAAAGCAATTGCTCTAGACTCTTCAAAAATGTCAATGTcatgaagacacaaat-----aaaatcaaataaaatttttaaaaattttaagtacatGAAGACTAGTCTAAACAGAATGAAGAGTTAGGACAACTATTGCAAAAGTGATTTTTCTTTGGACTCTAGTTTTgtaaaaagggagaaaggaaagagaaaagttatAAAAAGATTTTTGGGGGGATGTTTTTGAgaaacagga

a score=38929
s chr3           104133025 2050 + 160039680 agccctggatggctatgctttgaaaaacc---ttacaagactggatattggcttgcctctgggaacttggattaaaagagagttttcagcattccctgat-------tttcattatacttgaattgtgaaaactgttatacctctgggagtctgaagt---tctgtgaggttgaggatatctatgtaaccagcctccataaaactcccagctattcagtttctaacgaacttccctggtttatatttcacatgtgctgcca-caattccatgctggaggagtcgagggtaccatgtgtgattcca------gagtgagcatatctggtgtcttcacacttcatgccatgtatctttcctttTTCTATAACAAATCA-AGCTCTGGGAGGGACT--AAGCAGAGTTGTCTGGGGAGTTGTCTCAAAAATTCACTACAC-TTCGAGTGGCCTGGGAGACCTCTGACAATAGTATGCTCTATATAACAATGGACTCAT---------AATCCCACaat--------------aattaaaataatttttaaattatcttttttcataaa---atataaaaaaGAACATTTAATAGGCATCATTAAGGTTTGCTTGCTTTTACTTTGGACTA--TTTTGCAAAAATTACAATCTAAAGAATGTCTAATGTCAACCTCCCTCATAGAACAAATAAGCAAAA-----------------GTATTGATTAATAACTTAAGCTATAAACCAAGTCTTGGCTTCAAAAAGAAAAAAATTATCTT-AATAAATCACATTTTTACAAACATGTATATAGACACACACCTGTACCTATTCATA-------AACCCTCCAAAAGACACTCCTCTAGGACAGAAACTCAAAGATTACACTGTAAAGC-CAAAATTCTTGAGGTT--TTTCCATCTGTTTGTACAGACAGGATGAGGGTAATTTCAAAAAGCACT-GTTACCCATTTCTTCACCCTTGGAAAAGACATACAGCTTGCAGTAACGG-GAAAACAACTGTGATATAGTACTCTAAAGAGATAAAGCTTGAAGAC--------TAAAAACTACTTAGCTGCTTCCTCAATTGTACATTCCTGTTTATGAGTATGCTTTTAGGTATTCGTTGTTTCATAATAAGCATGTTTTATCTAAAATATTAAATAACAT----------------TTAGCCTAACTGGTTTTTAAGTTAAAGTAGAGACATCATGCAATACCTATTTT-ATCCATCACAGGAAA-----ATGTAATTGATTCAAC----TTCATAGCAA------------ATAAATCTGTGAGCTCAAAAAAATCAGCATTTGCCTAAACCTTAAATCACAATATTAATGGAGGCAGCAATAAGATGAGAATGGAGACA-GAAATGTTTTTTTAACTTATATTAAAATGCTTATCTATCCAATCAGGCTGTCATGCTTATAACTGAAATGATCA---TCCCTGTATGTACATATTAAAAATAAAACAA-------TTATATCTTTGTGAT--------------------------------------------------------------------------ATAATTTTAATTACACTG------------------TCTCAA--------------------------------CTAGT---------------------------------------------------------------------------------------------------------AATGAGTATGAGGCTAATagcaattctgtaaggaaagcaattgcttttatgaa--tgcaaaacatctggttaacattactcaatttagaaagTCATATTCTAAGAAAAGTAAGAACAGGGGGTAAGAGTTAAGTTAAATACAATGAATAAAAACTGTAGCCACAAATAT---ATTTCACTCACT---TGTTTAGTTACCATGAATAGGTCATtgccaagaatacaaagatatggtctttgcattccaggagctcatggtagtacagaggacaACTCTGGTCAGTGATGTAAGTGG-----TATACTTTGGGTGTTATTGCTGAAGACTACCAGATAA-ATTTAGAAGCAAAGAGGCGGACATGGTCAGTTTTAGAGGTGGTGAAAGATGTGACATAA----AAAGTCTTTCCTACAGGGAATGAGAAAAATGGCTACTAACAGACTCGATAAGAAAAGACATTAAGATCAA--TTTTGGTTTTGATCCAACACTTGAAGCAAAATAGAAGATACAATGAGAGGAAACTATCAGGACAAGAGGCCAGACATTCTGGTAGAGCTACTTTAGAATGACTCCTACATATCAACCTAGCAGAAACTAAGCAACAAACAAAAAACTCAGGGAAGACCAGATTTTACAACTGAATTATTTAA
s HiC_scaffold_1 114567996 2308 - 233722169 AGCTCGTAACTGCTATTCTTACAAAATCCAGCTTACTAGGTTG--------------TCTGGGAAACTGGATTTTGGGAGAGTTTTCACCATTCCCTCAGAAGAACACCTCACTGTCCTTAAACTCTCAAA----------CTATGTG-GTCTGCCATCTATGTGCAAGGATATGGATATCTGTGTGTTCAGACT--ATAAAACCCT---------GCTCTCTAATGAGCTTCCTGGATGTACAATTTACAAGTGCTGTCAACAAGTCCATGATGGAGAGGTCAAGGACATCCGATGGGACTGCACTGGGAAAGTGAGC----TGGGTTTCCTCAGACTTTGTACCAAGGGCCTTTCCTTTTGCTGTCTCCAATCAGAGGTATGAGTGGGACTGTACGCTGAGTTCT---GTGAGTCCTTCCAGCAAATCATCACATGTTAAAGAGGTCTCAGAGGACTCTG-TAATAGTATGCTATATGAGACAGTAGTCCCATTATTTTAATAGTCCCATTATTCTAGGgtagtgaaaactaaaaaaaatttaaaaca-----ttttcataaagtcatatcaaaaagaa-atttaataggCACCAGTAAGATTC--------TGACCTTGGATTACATGTTACAATAATTACT-TCCACTCAACAGTAAATGTAGACTTCCCTTATAGGACAAGGAAgcaaaaagataattaattatGAGGAATTCAATAATACTTTAAGCTAAGAACTAGATCTCAGTCTCAAAActaatacaattatttttaagaaatctcattTCCACA--CATAAAGACAGTCCCATTCCACCTCAAGTTCATATAAAACTAAACCTCTAGAATGAATTTCT--------AGAGCtcaaagattaaattttaaaactcaaaattttccatggtcctttgtttctgtttgcacAAACAGGATTGAGGTGATATCAGAAAGCACCAGGTGCTCATCT-TCCCCTTCTGAAAATGATGCACAGCTCATATTACCGAAGGAAGTAACTGTTATTCATTCCTCAGAAGAGAGAAAACTTGGAGGCAGTACATATCCAAACTGTTTAGCTGCTTCC----------------ATTTATAAATAAACACCAAGATATT-GCTGCCTTACA-----TAtcttttttacaaaatattaaatattataaatattattttaaaattaaactggCTAGAGTTAAGATTCTTTTAGAGACAAAACACAACATACATTTTTGTTTATCACTGAAAATGTAACTGTATTTGACCTAACAAGTTTCAAAGTGATTTTACTTTGGAACAATTCTGTTGGCCACAGAATACC------TGCCCAAACTTCAAATCATTGTATGAATGGAGACAACTATCAAATGGGAATAGAAATAGGAGATTTGCTTTTCGATTGT-TAGAAATGCTTTTCTATCTCATCAAACTGCTATGTTTAGGATTTAAATAATTAGGTGTACTATACATAGCCAAGGAAAAGATCACAGTAAAGTTTCATTCCGTTATGATTTTAATACTCTGCCTTTCCAAACTTCTAAACTGGAATTATTTATAAGATCACATCAGGTATGGCTGGCACACACATAATTTCAGTTATTCTGAAGGCTGAGGCCtaaggatctcaaattcaaggccatcctagaaAACTCAGCAAGACCTAGCCCCAGagtaagaaatacagaagactgaGAATATAGCTCCAGTGGCAGTGCACATACCTAGCATCCACAAGGCCCTGGAATCGATCTCCAGTATCACTCTCTCCAGAAAGAGTACTAGGATAGTCACAACACTCAATGGAAAGTCACTgcttatatagattttttaaaaagtttgttacTACTACTGAATTTATAAAGCCATAGtctatgaaatattaaaacaaaggaaaCTATTTAGGTCAAacacaatgaataaaaattatggacataaatctaaaatttcattcactcactatTCAGTCAACATGAATGAATCATGGctgagaaagcaaaga-aaggtCTTTGTACTCCAGAAGCTTACAGTGGAACAGAAGACAAGCCAATTTAGCAATCTAAGAGGTAGTATATGTTATTTGTGCTACTACTGAAGCCAGTAAGATAAGACTTGGAGGAGCAAAAGAAAATGTCATCAATTTTA------CTGAGGGATAGGAGAGTAGAGGAAAATTTTCCCTGCAGGTAATGAGAAAG-----TATTTAAGGGTT--ATTAGAAAAGGCATTAGGATCAAATTTCTGTTTTACAACCATCACTGGCGGCAAAGCATAAAATGCCCTGGAAGCA-------TGTACAATAATCCAGGTTTCGCAGGAGAGGGA-TCTAGAATG-CACCCACATATTTAGCTGggaagaac-------aagacaaagaatgGAGGGAAGATCAGATTTTGT-GTTGAACTGTTTAA

a score=5914
s chr3           104135073 184 + 160039680 AATTTACTATGTTTGACATACTACAGAAAGATAAAGATGCCCACTTACATACAAGCCTCGTGTTTACTAACACCATCCTAAAGGCTCTGAATTGGTAGTGCCAATGTGTAAGTGATCAGAGAAGACACAGACATGGGCAAAGCAATCT-AAGGCAACTAC--TAGATAGATAAGAAGTACAGAACAC
s HiC_scaffold_1 114570725 173 - 233722169 AACTTACTGTG----ATATGCTATGCAAGTATAGA----------CAGATATAAGCCTCATCCTTACTAAGACAAATCTAATGGTTTTGAATTGGTAGTATCAATGTTTAGTTGGTAAGAGAAGTTATGGGCATGGATGAGGTAATCCAAAAGCAGCTACTATAGTTaggagaaaagttaaaaatac

a score=34626
s chr3           104141774 1109 + 160039680 AAGAAAATAAAAATAATAATGGCATTAGC-CATTTTAGGGTTACTAGTAAATATTCTTAAATAGTTTTAAATT-TGTATGTGATTTTGATGTTTAGGGGCTAGAAAAAAAT--CTAGATCTTAAAATAACAATTT---GACAATAAAAATCCTTTTGTCAGAGAATTTTGGTAAATATGCAAGCaattataataattaatagtaataataataaaaCT-TCACAAAGACTCTCTAGTGTAATCTTAGGATTGCTTAAGTGAAAATGGAATAGCTTCTAAATAATACTATAATTCATTCAT-TTGTGTAATTTCCTCCCATTCATTTTTAAGAGAAAAAATTTT------AAAAATGTTCTCCACATAACTTATGCATAATAGTTTTCCTGTTTCAAAATAGCAGTGACAGCATCCAACAAGGAATCTTGAAGGGTGTTTTCTCaaaaaattaaaattaaaaaatCAATCATTTTCTCAGTAGGAAGGATCAATGTAGGATAAGGACAGATCAATACAGCTTATTTATTTCCTTCTGCTCTGATCCTAGGTGTGGCTTCACTTTTGCACTACAGAATATACTTTCTGCATACAATAAAATGTGACACAGGTCTATTAAAAGGAAGAAGGAAAAGAATTTCATGTTTATTTGTCCATGATGAAAGGAACAAGGGTGCATCAGCACTCACTATGCTCCCATTGCCAACC---TTCTAAATGGTAGATGAGCAGCTGTGTTTCTCACACCTC---CAGTTATCAGAAATTAGTGCAGCTGACT-GGGAACTGTAACAG--TCCTCT---CCAGTTCAGTTAAACAGGGCGAGCCGTGGCAGCTTCACGGTGTATTTACTTATCACCTTGGAGGACTTTGGAGCCTGCGGAGAAAAA-----------CAGCCAGGCTGGCCAGATGCCCTGGATTGCAAATGTTTGACCAAAGGGGTTAAAACACTGACATGAAAACTTTAAAAGAAAAGTGGTTACCCTTAAGTTTTCTTCCCATCACCTCATTAAATCTATCTTTGTCTTTCTTTCCTTTTAACAAAATATTGCAATGGACACT--CCATGTTTGCATGCCATATTTCTTTTCTTTTTAACATAT-CTTTTCACAAATTCACAAGAGT----TGAGGAAGAACTGA
s HiC_scaffold_1 114578867 1058 - 233722169 aaaaaaaaaaaaataactatgcATTCATCTCATTTTATGGTTGATAGTgaattttt---aatagtttaaaaatatgtatat--ttttgttagCTTGGGG-TAGCAAAAAATGTCTAGACCTCAGAATAACAATATAAGGACAAAAAAAATCCTTGCATGACA-CACTTTGGTAAGTATGCAAACAAT-----------------ATAATAGCAAATTTCTCACAGAAACTCTCTTGCTTAATGTTAGGATTGCCTAAGTGAAAATAGAATCATTTCTAAATAACACCATCATTTTTTCACATTGTATAATTTCTTCCCACTcatttttagaaggaaaaaaacccaagaaaaacattttttgcaCCTAATTTATGca-aattgttttcctattttaaaacagCAAAGACAACATCAAACAAAGGATCTTGAggg-----tttttaa------------aacaaagcaatcatTTTCTCAGCAGGAAGAAATGATGTAGGATAAGCACAGATCAATAAAGCTTGAATGCTTCCTTTTGCTT------------TGGCCCCAATCTTCTACTAGAGAATAT--TTTTGATATACAGCAAAGTATGATATAGGTACAtttaaagaaacaaggaaaagcac----TAGTTGTTTATCATTAATGAAAGCAG-AGGAATGCA----CACCT------CTCCCATTTCCCACCCAGTTCTCAA------GCCAATTCCTTACTTTCTCACACCTCTCATAGTTATCAGAAACAAACTTGGCTGACTAGGAAACTATGATAAATGCCCCTAGGCAAGTTCAATTTAAGAAAGTGAGTTGT--TAGCTTcaaagtgcatttatttattgtgtcAATGGACTTTTGGGCCTGTGAAGAAAACAGTGAAGAAATTAGCCAGGCCTTCAAAACAATCTGGATTG------------CAGAGGGATTAAAATCCAGATGTGGAAGCTTGAAAAGAAAGATACTTACTTTTACGATTTCTATCTTTCAGGCCA--AAGtctatttttgcttctctttccctttgacAAAAATACTAAATGTGCACTGCCTGTATTTACAtaccatg---cttttctttttaacttgtaATTTTCATAATTTAGCAGGAGTACTataaaacagaactga

a score=34897
s chr3           104144319 2671 + 160039680 ATGTGTGTGGATATACAAATACA-TGGATATATAGAGAGAATTGTTGTATAGTTAAGATGCTACTCAAGAGCTATTTTAAGGAAATCTGGTATGTATGTTAGATGATAATAGCACCACTATAAAAATACAGAAGTTAAAAAAAATTTAAGACCAAAAAGCATATTTACagccaaacatagtggtacattcctttaatcccagcactcaagaggttgaggcagaaagatctctttgagttcaaggctagtctggtccataaagcaagttccaggtaaggctacgcaataagacccggtcaaaggaacaaaCAGACAGACAGACATATTTACAGTATTGAGAAAAATTAAAATTTATCACTGCTTTCCTAAAAATGGTTCAATCAATTAAGCTCTAATTATATGGTTTTATCTAGAAAATATACTATTCAGGCCAGAGAATATAATGCATTTTACAGGAGAGCTAAGAAGACTCAAACAACAGACCATGTACTTTGAAGAGTAATTTGGCATAAATAAAAATTACCTT-TTAAAAATGTTTTTATTCTGCAAATGTACTTGCTCATTAAAGACTAGATTTTCTATGGTATTCAGTGCTAGCCAAAAACTGAGCAAAAAATAAAAAAAT-----CATAAACATTACTAAACATTTTTATGTTTTAACAAATTGGAAATTGCCTCAATGT---GAGtaaaaaataaataataaaaataCTGAACATAAAATAGAATCATGATTATACTAAGTTATATATAATCATATATGTGTGTTAATAAGTAAATTCACAGGTAAATAGAACACTAAAACTAATTATCAATGTTTCTTTCATCAAAATAAAGGTTTACTTCCACAATGAAATTCTAAG--GCTTTGCA-ATCCTTACTT-GGTGTTGGTGAGATTGCTTACTAATCAACTCATACCTGGAAATCTTATTTAAGACTGGACATGTTGATCTTCACAGGTTGGTTGCTACTG-AAACGTTTATCAGCCTTTCTACCTGTTGGTATACTTGATTCTTGTTTTAAGATTGATCTCatttttagtcatatgtatgaatgtctgtctgtatgggtatatgccaca---------tgtgtaggtgccagagaaagctgaa---ggtgtaggatacactagagctagagtta----caggtgcttatgagctg---------cctgagaagatgggggaaatcaaattctgatcctctataaaa-------gcaatatgcattgttagctgctgaaccatttctacaactcATT--ATATTCAAATCTAAATTGAAACCTCAAACTCAAAAAAGTAAGGAGCCAAA--TGACTTTTCCGGGACAAAGA-CACAGATATAAATCTCATTTATATTGACTAGAAACTTATCCTTGGCAAAGACAGACATCAGCAAAATGGACATCTGAGTAGTTTCAATTAAAGTAGAATATCTACTTTTTAATATGTAAATTTTACTATGAGAATATTTGGAAATCATAAAATGCATTA---TCAAAAGTAACAAA-TTAAGGTCCAA---TCCTCTTTCACATTATTAGGTTAAAATATTTACAGAAAG------------ACATCAACCACTAAAAGCTTCAAAACCATGTTATATTTATATTATGTTAAAGAAAAACCTAAGAATTC--TATGCACAGAATAGGCAATTACCAAAAGCAAATACTTCCATGAATCAGA--AGGTCTAATGTC---AGAAATTTAAATCTATAGAGTTAGTATGTAGATCAATTTTAACATGAAGCCGCTATCCAAACTCCTTGTGTACTTCTACA----TGTCTGTAATGCTTTCTTATAGAGTTTGCtataaatatttgtttacatcgcctgctctcttattagtttgtaaactcctggggattaccaactttatatccctaataactaacacataCTTTAGTCATAAATGCATTATTCAGTTTATTTTCTAAATCAATAACATTGCATAAACAAGACAATTTTAATCAGATTTAGTTGCTATTTTTATAAGTTATTTTCA------------------GCTTTATAAACTGGTATTAAAAGTAAAGGTACGgccagatgcagtatattctacaaaggcctgtattcccggtacttgaaagacaaaggaaaagaatagtcatgagttctagaccagccttgagctataaagctaatgtgtctcacaaaactcaaaaATATTAGGGATAAGAGAGGGTAACTGATGAAGATGATCAAAATTCACTATATAACACATATGAAAATGTCATGttaattaatacataataatatataatgtataattaataCATGCTAATAAAATACTAAAAATACCACAAAGGATTTTAAAATACTAAAACAAAACACTACATAGTCTGCAAGCTAGATGTCATCTTGAATTCTAAAATGCATATATGCGTTTATCTACATATGGCGTTTAGATCTTGCCAAATTAAAACATATTTTAGGTCCACCTTGGTTTTCTCCGTCCACAGATTTTGCATTGTTTCTAATTACTCATTAGTTACATTGCCTCCAACTACTTTACATTTGGTAAAGTTAATGAAGACAGTATATTCTATGAGGTACCTTTCTAGCAATCATTTCTACAAAAA--CAGAACAATTAGAGTAATAGCAAAAATCTGAAGATTCTGTTCAATATACACATTTATTTTGTGCTGTTTGTTTTTTAATGTGCAGTCCTTTT----GGACTAATATTTAAGCTATTACAG--ATATGTGTAACCTGTGG-TTTTAAAAATAA
s HiC_scaffold_1 114586930 2163 - 233722169 ATGTATGGGAATATAAACATATAACaggtataaaaaga-aattattgtaTAGTTGAACTTCTACTCAGAATCTATTTTAAGGAATTATACTACATATATTAGGTGATAATTGGGGTAGTTTCAAATTACAGAATTT-AATGAAGCTGAGGATTGAAAA----------------------------------------------------------AGGCA---------------------------------------------------------------------------------------------------------TTAGGAtactgag-aaaattaaaatttagcacTGTTTTCttgaatctgattcattcaaTTAAGTTCTAactacactgttttattttg---atataatattCAGGTCAGGAAATACAATACATTTTATAAGAGATCCAAGAA-CCTCAACCAATACATCATATGTTTTGAAGGGTAATCTGAACtgcataaaaattactttaaaaaaaatgtgcctAATCTACTG------TTGTTAATTAACAGttggattttctttagtaatcAGTAGTATCC-TAAACTGAGTAAAACTTGGAAAACTATAAACACAAGCATT--TAAACATCTTGAAAATTTAACCAGTTGAAAATTGGCTCAATGTCAGGAGggaaaaaaggattttaaaaattatcaataaaaaatGCAATCATGATTCTACTAAG--------AAACTGGAATATCAATTAACagataaaaaactagaaaaataacaaact--aCTTAACTATCAATGTTT-TTACATCAAAACACAGACATACTCCTTAAATGAAATTCTAAGATACTTTATAGATCCTTATTTGGGTTGTGATGCAATTTCTTACAGATTTCCTCAGCACTGACAGTT---ATTAACAAAATGCATGTAGGACTTCACTAGCTGAGCGCTATTGTAAGCATTTATCCATCTCTCAACCAAATGGCATACTCAATTCCTAATTCAA-----ACCTCAAACTCAA-AAGACATGCAAA---CAATTTTTCTGGAACAATGACACAGAATAATTCTATTTATATTGTTGAGAAACTTTACCCTTGACAAAGACAAATTTCAGCAAATTTTATACCTAAGTAGTAATCAATTAATGTATAATcctgaaaatatg-------------tttttttctttttgaaacaggatttcaatACGCAGTTTgaactg---------gcctagaactcactcaGTATTCAAGGCTGGA-------CTCCAACT---AGCAGTGATCATcctacctcagctttccaagtgctgggattacaggcatgtatgtcaccatgcctggtcaaatatgtatattttgcaA----------CAGTGAAACTGA--------------------------------------------------------------AGTACTTGGGAGTCATTCAATGCATTaagcataaataaaacaaattttagaacCACAGTTTCTTTATCAGATCATAAGgctaaaagataaataaaaagttcACAAAAAATAGGTCAACTACTAAAAGATTCA-----ATGGCTCATCTATAGT------AAAGAAAACCTGGGAATTCATTATACACAGCATAGATGTTTGtcaaacacaaaaatctgtatgAATCAGAGCAGGTCTAATGACGTGAGCTGTTTTGATTTATGCAGTCACAATACAGCTTCATTTTAATATGGCAGAGTTAGCTAAGCTC--TATGCGCTTCTAAGACACTTTTTATAGTGCATTATTATAGAATTTACTATAAATAACTGCTTA---GGTCTTTCCTTTTATTAGCCTGTAAGATCCTAAAGATAACAAACTTTATAATCCTAATAACAAACATAAACTTTAGGGCTAA-------ACTCAgtttatttgttaaattaatgAC--TGTGTAAACAAGATTGTCCTAATCAGATTTAGTTCC------TATAATTTATCTTCATAGACGTAATGAAAATATGCATTATACACTGACACTGAAAATAAAGGTACAtc----------atcttc---------------------------aaaaacaa---aacagtatgttCA------CTGGAC--------ATTTA--------------CTCACTAAAT-----------------------------------------ATCTTCTTGGATTCTACAAAACATATGGGCTTATTCTATTAAGTGTTATAT-------------------TTAGGAC--------------------------------------AAGTACCTAACCa-------------------------atgtgttctt---tttaaaaatg-----------------------------tagatccTGTA---------------------------TGGCTTTCTTACTCTATGTACTCTGTATTGTTTCTAATCAGTta--------------------taattcacattttttaaagtaaacgCAGACAATATACTCTAATAAgtactttataaaaattaatttctgtgaAAATCTGGAAAAATTAGA-TACTAACAAAAATT--AAGATTCTTTCCAA-GTAAATATCTGTGTTG----GtggatttttaaatgtgtagTCTTTTTTTGAGGAT--ATATTTAAGCTACTAGAAGCAGATTCAGAatcactgacttttaaaaataa

a score=41163
s chr3           104160381 1768 + 160039680 cACATTAATAATGGCTTAATTGGTTCTTCATTTTCATTTTCTAACAAATTATATTGGCTCTGGGACCTAAAAAGTTTTAAGGTGTCTCATTAGGCATCTAAGTAAACCGTATGTTGCAGCT---AACATTTCTAAATAATCAGGG--GAAACTGCTGCACTAAG------CAAATCAACTGCAAAGAGCTAATGTAACATG---TAGAACCAATCTGTAGGTGGAAATTTTTACATTTTAGGTCCCAATTTTTAA---AAAATGTAACGGAAGATTGTTTCAAGTATTGAAATCTGAACTTTTAGCCTAGTTAGGACATTCC--ATGGATTCAACAAAGGAAGACCTTTATGATGAAAAGGCTCTGCTCCTTCTGAtagaaggaaacagccatgtttaaaagtgatgcctgatcgaggggcagagaaagatttgatagaatgagtcagagacaggata-tgctgaactctcatgagaacagacaggaaagagaggaaacttaaaataacagcacaggggcaggggttgttttacagagacgggctgcaggtgaagatggaacgggccaaagaatgaggagccaaaaaattagaacagattgccagagttagtacgaggccgtgcagagcaatccattctgaagctgagagaagcaggtccgttgaatcagtcagtttggagagtttgggccaaaacagctaagttgaatcagccagccacagttcagaaagagccagaaagggtgagcttattcagcagtaagcctccaagacaatcacatctagccaatgaaagatacattt-acaGGAAATAAATGATCAGTCATCTAATTCTACCAAATAATAGATTTGACCTGAAAGAATTTAAATAAGGCTTAAGCAAAACAA--------AGTTGCTTCAAACCCTACAAAAAAGTTCATAAAACT-TTTATATTACACAAGTAAAATTAATTTTACTGAAATAGTTTTATTAAGTCAAAGTTGTGGAGTCTATATTTAACACTAATATTTGAGAATGAAGAATATAAGGTTAGCTAATTTGTCTTTTTAACGTGACCTTGGAATGACTTACTCATGATAAAACCAAAT-TCCAATAGAACAGATGGTAGACTAGATATTGCCAATGTTTTCG-CTTAGaaaatatttttaatttttttatttCCCCATGCTGTGTTTACAGCTTTACATATGTCTCTGACTGCCAAAGAATTGTTAACTAACCGGCATGAGATTCATTTTGTTAGTTCACAGCTGGGCACTTTAGTCATACAACATCTGCTTCTCAACATACTGTCTGCTTTTTCTTCATCTATCTCAAAACA---TCTAAAAGTTGTGACAGTAAAA-----GCATATATACTACTTCTCAATATTTGGAAACTAAATGTGATAATAATCATTATGTTTATTAGTGTTGCAT-AACTTATCAGTGGCTTCTGAATGCCTAAAATCCATACAATGTATCTAAGGATCTAGAAAATCTAGTATTAACAGCAATTTGCAGAACCATTTGGTT--GTCAAAAAATAAAATACTCCAAGAGTCATGAAATAATTAGATGTTATTTTCTGCATATGTATCTTTAAGCCCTAAGC-AGACATAATGGGAAAATAACTAAAATTTCAAAATGTTAATGTTAAAAAATAGAATATCCACAGAAAAGAATACATGTCATTCTATAGTCGAGACTCTGATTTTTTTAGTGTCATTAACTTTTAATTATATAGGGATAAATTAATAAACAACAGATTATCAATGTCCTTAACTACCAGATTACCAAAGTCCTTACTGTTTCACTTT
s HiC_scaffold_1 114627664 1436 - 233722169 CACATTAACAAATGCTT---TAGTT-TTCATTTG-ATTCTAAAACAAATTATATTGGCCCTGATTTCTATAAAGTTTTAAGGTGTTTCATTCTAGTTCTAAGAATATCCTATGGTGTAGTCTGCAATGTTTCTGAACA-TCATGGaagaaattttcaaacaaaaaccCACCAAACCAATCACAAAGAGTTGATGTGGCATAATATACAAACAATCTATGgctatatatttttcaatttttggtcc-----TGTAAGGGAAACTGGCATGGAAGATTATTTTAAGTACTAAAGAATAAACTTTTAGTTTAAGTAGGCCATCCCTAAAGGATTCAGTATAG-----------TGGTAA----GCACAGCTGCCTCCTA---------------------AAACGCTTTTCCTGGTAATTGGTTAAAGGGAGA-------GACT---TTAGAGATAAGATAGCCCTGCCCTCTC----------------------------------TGACAGAACAC---------------------------CTGACGTTAAAGGTCAA------------------------------------------CAGTGTTATTAC-------------------------------------------------------------------AGCTTGTGGTAAAATG----------ATCATTCAACCA--ATTCTggtaaag----------------tatttaaaaagaaattttaagaataatta-----------------atAGATTTGACCTGAGAGAATTTAGCATATGT---GCTGTACC-------------TACCTGAAAGAATTCAAAGGAGGActgaacaaaacaacaaaaaaaatttgtttcatgacacaaaaaagcaaacataaaattatttatattacacAAAGTAGTTTATTTTTACTGACATA-------------AAACTTTTG--------ATATAATGCTAACATTTGAGAACAAAGACTCTAAtg--agttaatttattttttgaa-gtgaCCTTGGTATGActtacacacaataaaatcaactCTTCAGTAACACAGATGGTAGACTAGACATTGCCAATGTTTCAGGCctagaaaatgcttttaa-------atttccCCATGCTGTGTTTATTGCTTTACATATGTCTCTGACTGCCAAAGAATTGTTAACTAATCGGCATGAGATTCATTTTGTTAGTACACAGCTGGGTACTTTAGTCATACAACATCTGCTTCTCAACATATCTTTTGC-CTTTCTTCATCTATCTCAAAACAGTTTCTAAAAGTTGTCACAgtaaagtgtatatatatatgctccCTCTCAGTATTTGGAAGCTGAAGTTGGTAATGATCATTACATTTATTGTTACTGCATAAAATTATCAGTGACT------------AAAAAAACCCAATATATCTAAGAAT-TAGAAAATCTGGCTTTAATATCAATTTCTAAATCAATATAGTCGaggcaaaaaatgaaattcaCT--GAGTCATGCAATAGTCAGACACTAttctctacatatata--tttaag--ctgAGTGAGACATAATGGAACCATAACGGAAGTTTCAAAACGTTAATGTTAAAATGTTGAATACTCATAGACAAG---Atacttcattcttcaatttaatc----atattttta--------actttctcatTGTATAGG---AAATTAGAAAACGA---ATTATCTATGTCCTTAGC----------------TTcttgttttttcacttt

a score=14251
s chr3           104162187 397 + 160039680 CAAGACACAGAAAGGTAAAATCCAAAGATAGGTCATTCAAACAAAACACAATGTATTCTATTCTGAAC----GTTTTCAGTTCATTTCACT---------TTCCTTTTGGGAATAATTTATGAGAGTAGTTAGATCTTGGGATAATCTTCAAAGCTAAAATGTAGTTTAACTATAAGAGTAATAATAGCACACAACCCAAACATCTTTTATACCACTCTTTCTATGTAAAAATTCACTCCAGAATTTTTTAAAAAAGCATTTGAGTACCA--TCCTCCCAACCATTCAGTAAAGCAGCAAGAACTTCACAACTTA-ATTTACCAGAGTTCTCTCCAATTAGCCGAAAGTCAACAGGATGAGAAAGTAGAGGAGGTATAATAATTGTAAAAGAtactcagctattaaaaagaat
s HiC_scaffold_1 114629926 397 - 233722169 caacaaacagCAAGGTGAAACTCAAATATAGGTCATTCAGCT----CATGATATATTCTATACTAAATCCTTGTTTTAAATTGGTTAGAGTCATAAAGTATTTCTCAATGGAATAATATACAAGGGTAGTTACATCC-AAGCCATTCTTAAAAGCCAAAATGTAACTGAACTAAAAGAGTAATAACAGTACACAACCCAAATATCCTTTATATCTATCATTTTGTGACAAAATTCAATCCAGA---CTCCAAATGAACATTTGAGTAACAAGTCTTCCCAATCACT-AACGAAGTAACAAGAGTTCTACAATTcaggtttctcttttctttttccaatcaGCCAAAAATCAACAGCGTGAGAAAGCAGA--AGGTCTAACAATTGTGGAAAGT-----TCTAATAATAAGAAT

a score=48842
s chr3           104166218 2965 + 160039680 TCTTTTAGCTTCTGAACCACTAACAATGGTGTCTAACATACAAGTAG-GAAAAAGGAGTAATCCCATATTCTTATGGACTAAAAG--AATAATTACATGGTTAAAATTTTTAGTTATGTTATTCGACATATACATAGGTAGTTAGGGAAGTATTTGTGCCCGTGACAAGCACAAACAGAAAGTGAATGAA---------AAAAATTCAGAAGTCCTTTTTTAT---GTTCTA-----------TTTTGATTATCTA---GAAAAGAAAAGACTAAAAACCATACATTAATCACAAGCTAATGAGACAAGCAGGAAATAAAAAATGGGAAACAAGGATGTAGAA-AAGTAAGATATTTAACTAGCTAAGAATGACTGAAGTAATAATCAGCTTAAAAGTGACATATACTTGCCTCACTTCCAATTTTATTACTGTTAAGTATTA-ATAGGTAAGTTTAGTTCCGTAAGAGAAAGGTGAAAGGAAAAGGCTGCAAAGCAACGCTGAGCTTCCGACAGTAGTATGTAAAACTCAGGCTGAGCAGAGTGGAGACAAGAGAAAATAggagcctttcctggctcagtactttgtgaaccactcttctccatcatctcctggttggtcaataaagagctgattagccttttagctgggcaggaaaaatatgggacttccatgccttgagagagaaagagagtctcaggtgagctgaggagtccccatgatgacacagatgaagaaggaggtcagcgtgagaccaggatggcaggcaacaggacacacggctgggaagtcggttgagaagtaggccaggccagctcagaacctgcccagctttgtgagtgccagaagggtgtaatgaatgtaccaggtgtcagggagataaaaagtggtgatagaaaagcccCCTGAATCACATTTATAAACAACAGCTACTTCTAAGACTGTCATCTCTAATTATTTCATTTTAAAACACCCTTAAAATGTCTGCCAAAAATACTGACTGCATTCTAATATGACACCTTTTTTATTATATCATATTCAAACATAACTAACTATATAGATGAATATGCAAAT-----AAAGCTGT-CTGTTTTAGGGAAGAAAGAAAACAGGTACTGTGCACATTCAGGTCTTTACAACTATACTAAAAATGGATACACAGACACATGTATTAAGAGTAGGATAGCATAAAACACAGAATCTAATTAGTCTACTCAAAATAAACAAACAAGGCAATACATAATTATTGCCCTTCCAAAGAATCATTTTGAGTATAGGCACTCCTGTAGTGTAAA-TGGAAAAGAGCCTTTTAAATTTCTTTCTTTAAACTACTTTTAAA---AGACTTTCAGAAAGAATGCTTAAAGAATTTTCAAAATAACCTCATTATACGTTGAGCAGTTACAGTTCCATTTCCCAAAGCATTT------------------CGCCCATACTCACCCCCCAAAATCCTGTTTATTAAAGAAGCATAAAATAAGGGGAAAATCAGCATTTAGCATCTTCCATTAACCATAATTGTTATCT---------Gataaat-----ttatattttaagtaaattaaaaaattaGAACCCTCAAATGGCCTACCTTTTGATTTTTGAATACTTTCAAACTCCTTACTAATCTACAGGTTAA-TTTATTAGTCTTATTTAAATAAAAAC------TGAATAA-----------AATTCACTTAGGCTTATAATTATGCAAGCTGCTTCATCATCCTTACAGACCATTTTGCCATTAAAGAAAGCTTTTGTTTTCCTTCACTGGTGTATTCATATTTTAA-TTTGGCGTTCTGCACAT----TATATGAAGACA-ATAAAT-----------------TATGAAGGCAATTATATG--ATCCCACTTATATAACAGTACATTT--------TTTACATAACACACTGGAATATAGAGGTTATTAAAATTATTATCACTCAGCTATTTTCTGTTATTAC---------------------ACTGTAACATTCCTAAATCTTTAATCAAA-----------ATAATTTATTCT--ATAAGAAATCTATCATTAGATTTCAT------------------------ATAGTTCATTTGACATAATATTCACATTATGTTTATACATGTTTTTCAATAGCTATTATTTTTAAACAGCCAATTTAATTCA-----CACAAACTCACAGCTATGAATCAATCTTAAAGATTTAGAATAACTACATGCTATTAGTGTCTCAAAAATGTTCCATTCATGA-AAATCTAAATTCTCATGTTTTTAATCTCAAAGCCCTAT-TTTTTACTTGCTACATTTTACA-------GATATAAGAGACTAGAAAAGATCAAAAAAAGTGAAATTATTCTTTGTTTACTCTTTCTCTACTTGGACACATGTCAATAATCC----------------ATGCTCTAAAGTTTAG---GCAAACAT--CTGC-ACACTGGCTACGTTTAATTCCCTTTCGTAATACTAGCCCCTTTCACGTGCAGTAAACAATACAATAAGCACTC-AAAAATATTTGTCAAATAAATT--CCTGAGTCAAGAATTAGTGAAGAAATATATGTGATTATTAGT------------AAT-------ATTCATTAAAGTTAATAACTTACTCCTCTAAAAAACCTTCAGCTTCATTTATAAAACTTATAAATTGAGACATTTAATA-----AATTTCCAAATGA---------------AATTCTGAGACGGAGACTTCTAACCTTACATATTAACATTT-TAAGAGTAAGACAGAGAGGGAAGAGACAAAGATGGCATCATTGTGTTCATAATGAAAATAGATTATTATACTTAGTATGCTGTGGGCCAAGAACTCATTTAGTCATTAAAAAGTCAGTGAAGAA-------TTTTGGTGAAATTCAATGGAACAAAAAGCCAAAGGGGCTATTACTATTAACGCATGCATGCTTATTAAGTGCTCATTACATATCTAGTACTGTACTAAAC-------TCTAATTTCTCTTGAAGGGAAAG-ATTAAGAATTTCAACTTAAAATTTTAAAATATGTAAGACATTCTGTCTTTAAAGACAGAGTACCAAGGG---AGAGTG-ATAAGCAAG-----AATAAGCTACCAGGCAAAACAGGATATGAATTTTATCATGAAGACTTAGTATACAGACCTGGAAAAA--TGTGAATTGTATATCAACtaaa
s HiC_scaffold_1 114630870 2744 - 233722169 TCTCTTAGCTTCTGAACTG-TAAGAAAGTGTCCTAACATACCAGTAGAGGGAAAAGGTTAATTCTTTATGCTTTTTAACTGAAAGTTActgaaaatactatttaaaattttaat-atattattcaaTGTATACAAAGATAGCTAGAGAACTATTTTGGCTAGTGCCaaacataattaaataataaataggtaaatttttaaaaattatgtgatccttatttattaTGTTCTACCTTCTtgctttttctattatttaagaggaaaaaaaatcctcaaaatacaaatttaatcAGA--CTGATaagccagaaaagaaagaaaaa--gagaagcaaggcTTTAGAATAATCAAGATATT------------AGTCAC-GAAGTAATAGTT---TAAAAGGTAATGTGTACTTgcaataatttcaattttattcttattaaatattataaagatgAGTTTAGTTCCAT----Gcctgttttaaagaaaagacagggaa---------------------------------------------agactgaaaagaaattaaaat----------------------ttacatatacTACTAACATTGAACATC--------AGTATATAAAAA-----------------------------------------CTATGCTATGGGAATG----------------------------------------------------------------GAGACAATAATCCAAGAAAACAA----------------------------------------------------------------------------------------------------AGAGGGATAAAACGTCTT------------------------------------------TTCTAAGATTGCTGCTTTCAATTACCTCACTTTAAACCAGTCTGAAAAAA-CTGCTAAAA-TGCTGATTTCATTCTTATAT-----CTTTATTA--ATATCATGTTCAAACA------GCTCTTTAAAAGGATATGCATCTTTACAAAAGTTAAACTGCTTTAG------AAGACAAAAAGACCTGTGCAC--TCA--CCTTTaca--tata-taacaataaatatacAGACAAATACAGGGAGGAGAGAAT-GAACGAAACACAGAAACTAATT---TTAGTCAAAATAA-CAAACAGAATAACATATAAGTATTGCCTTTCTAAGGGATAGCTTTGAGTCTAGGAACTCCTGCAGTGCAAACTGGAAATtgaccttttaaa----tttctttagattGCTCTTtaaatgaaactttcaaaaataagTCTAAGAATGACTTCACTGTAA------TGTAAGATGGGAAGCTACAATTTCATTCCCCAAAGTAGTCCAacaacacacatgtacacacacacacacacacacaaaatgtttattcattaaagaa----aaaatgagaaaaaaaatagcagtaagtGTCCCCCAGTAACTATCAACATTACCTAGCTTAATGGTTAAATAATAATTTCCATTTAAGTAACTGAAAACATTAAATGCCTTAAATGGCCTACCTTTTCAT--------------AAA--TCTTACTGATATAtagattaattttattatttttgtttaaataaaaatatagaatgaatagtttttatatatttttcacataGGCCTATGA-TATGTAAG-----TCATCATGTTTATAAACcaattagtcattagagaaaccTGTTTTTAT------CTAATGCTTTCATGTCTTAATTTTGGTCttctatacataaaatatatatatatatatatatatatatatatatatatatatatatatatttatacaccaTCACACATATAT----GTACACCTATATGACAGTTACATAATACACATGTATAT-GACATTATTACATTTA-TATTAATGTATTACATGATGTAACTATAAAGAGTTTAGTGGGAGAATGATTGTGA----TTCAGCCCTTTAATCACAATATAACTTTCATAATTTGTTTTTGGTAAGAAATCTA--ATAAGCATTCATTttgaactttgtagatagtattaAATAGTACAACTAACATAACTTTCATAAGGTTCACATACATGTTTTTCG--Agtcattattt----acatttattttaattcaagCCCCATAAActcattaatataaa------tttaagacTCTTAACATCTCCAT------------------------CATTTATCAGAGATCTACAGCCTCATGCTTTTCAACTCAAAACATTAGAATTTTATTTGCTACATTTTTCACAATGGTCAAGTGGGATGCTAAAAAAGGTTAAAAccatttcagttgttctttgat--CTCCCTTCCCACTTGG-CAAGTGTTTATTTTCTAACCTGGATTTTTCAAATCCTGgaaatttcagaataaaagcaTAACTGCAACATCAGctgtgtttaatttctttt----acacCAGCATCCTGC--------------------TaatcattcaaaaaatatttattaaaggaaCTAAACTGAactaagaatgaatgaataactg-ATATGACTAATAATATGCTAAAAAAGAATCATAATAATTctttaaaggtaaaaa--tacttCTCTAAATTGgcctttcctttatttctacAGC-CAtcaatttataaaattcatatgcatattttcaaaatgcttcAAGTGGGTTAGTAATTATAAAATAGATACTTCCAAATTTGTACATTAGTATTTCTaagcataaaatggaaagaaaaaagacaacacaaGTATTAGTATATTCACAATTTTAA-GtcttattatatttataatgtcGAGGGTCAATAATTCATTTAGCTATTATAAC-TCAGTCAAGAAAACTCATCTTGGGTGAAATTCAAGGGAACAAATAGCCGAAGGGGCTATTACTAT----GAATAAATGCTTATTAAGTGCCCACTCTGTATTGGGCACTATACTAAATACTAAAATCTAAATTCCcttgaggaaaaagaatttaaaaattcaagattaGCTTCTAAAATATGTAAGACATATTGCCTTGGGAAATGCCATACTAAGGGAAAAAAGTGAATAgtcaagaaaacaatgaattacTAAGCAAAATAGTATGTGAATTTCATCATAAAGACATAGTATGCTTAGTTTGAAAAACTCACACATTGTATAACAACTAAA

a score=24887
s chr3           104170057 1399 + 160039680 TTTTTGACTCAATTTTGATGTGATCA--ATTGTCTATACCATTTCT-------AGCTTAAGCTAAAATTCATTTTAGACTTGAGACTAACTTTCAACTATGTACTCAAAGATAAAGAATAGCAA-AATAATATACTACAAATATTAATTTGCACTTTACTAAATAATTTATCGTCtaaatatttgtatttttcaaattttattatatatgaatgtattttacttttaaaattaGGTATATCTTTAGAAAAAAAAATTTTGACGTATACCTGGTTACTAAATATCTATGCATAGGATTAATGTTGTACAGCCTCTTATGTAACAGGATTGTGAATTTGTTTCAAATGGCATACATTAGAAGAAAATCATTTCTGCAAAGTAAATCCTGAAGTTTAAGATTATTTCCTGATAGCTGTGGATTTAGAGAGAATAAACC-AATGTTAATCCTTTCAAATGTTATGAACTGTAGCAGCAGATTCATAGTGTTCTATTTAATGATTCAGGAGTATAGCTCTAAATAAAGATAAAGAATTTTTTTTAATCTCCTAGAAAGAAAATACCAGCATGAAGAGCA---CTG------------GTCAC-------ATTTACAGGCCCAGGAGTATAGAACAGGTAGAACCATATCATACCTACTCACAGGGGCCTAGAGTGCCAACTGGT------------TAGCTCCTGCAGGTGTCCCACTGAAGAAAAATCCAAATGGAAATGGTGGTTTTCAACATTTAAAACATCCTAACAgggctgaagaattggctcataggttaagagtgctcataaccacttgtaactccagcttcaaaagatccaaggcctctggcctccacaggcaatcacactcacttgcacatacccacacacataTACATAATTTTAAACGATTTTTAAAATCTTTTTAAGTCATAAAGTATACCAAATAATGGTCATCAGGTTCAATTATATTTTGTTCTAATTTGTCCTCCTGCTCAA-CTGTCCTCTacacaaacacacaca---cacacacacatacacagagatacacacacatacacacatacacTCATTAAATTCCCTTCCTTGCCCATAGGCCACATTCGGGACAGGGGAATTTTAAAAGCCTAAAAATACCAATTAT----------GTGA-----------------------------AATAGAAACTTACCTTAC-TGCTTAATTCTTTttat-tttctagttataactatattttagaaat-ttctcctaac-tctgac-ttacc-ttttaaaaatgtttcctgttaaaataaatttcttaattttaagttagccaaatttattgatttcccattttctgattaatATAAAATCTTTCCTTGATTTTAATCAAATTTGAATAAAAATAAAACAGAAAACACTACTACTTTCCTATCCTAGAGTCATAAACACATTTCCTCATACTGGAAAATTGAGA-GTATTGTCCTAGCCATTCAAACAAAGAGG
s HiC_scaffold_1 114639730 1287 - 233722169 TCTGTGATTATATTTctacataattataattatttataagatttttttaaacaaatttaagcTC---TTCTTTTAAGG--TGAAAC--ATTTTCCAACATATacacaaagattaaaaagaaagatgacaaTATAGTA----TATGAATTTGCAATTTTCTAG----TTTATTGT-TATCTATGTATATTTTCTGCAAATTATCTTAtgtg--------ttagtttttaaattagtgaTATT--------AAGATTTTTTGAAGCATCACTGATCACTACATAAAAACACATGGGATTAATGCTGTATAGTCTCTTATGTAACCGGATTCTGAATTCCTTTGGAAAAGCATACATTAGAAGGAAATCATCTCTGCAAAGTAAATCCTGAAGTTTTAGGTTA-TTCCTAATAGCTGTGGATTTAGTAAGAATAGACCAAATGTTAATCCTTTCAAATGGTATGAACTGTACCAGCAAATTCACAAGGCTCCATATAATGATACAAGAGTACCGCCCTAAATGAAGATAAACA---------AAAcacccagaaacagaaga-cagCCAGAGCAGCAGGTCTGCTCAATGATGCTGTCACAGTAAAAATTCACAGACCCAGGATTACCTGG-AGGCAAAATCAAATC--ACCTACTTCTAAGGTCCCATCATGCTAAGTGGTCACTCCACATCCTACCTCATATAAGagcttcattgaaaagaaat-----tgaaaatagctattcataaagaaaacaatgttccattaaat----aaaattatatcttttttt-------cttatgg-CATTGacgatt-----------gaatccagggccttag-------cAATGAATTACACTC-----------CCAGCCC-----TCCctgacttaaaa--------aatattttttcagattttgagataga----------------------------gtcttgctaaaacttgttatcctcctgaCTCCATCTCTTAGACTGATGGAATTATGGCACagaccaccacacctggata---aaACATAC-------CATTTTAGAGGTTC-----------------------TAGggtcaaaagaattttaaaagtctaacGATTCCAATCATAGATGAGTAGGTGATACTCATCTGACTAATATAGTAGTGAAACAACAGATATTCGCCTTACATGATAGGAGGTCTTCATATGTCTTGTTAAAGC---ATTGCAAGTATCTTCTCCCACCTTCTGACATTACCTTTTTAATGATATGAcctattaaaat---tttcttaattttaagttAGCCAAGTTTAATGATTTTTC---CCCTGTATGATA-AAActctttta----------------------gaaaacaaaacaaaacaaaat---------ctatctTAAGGTCATAAACACATACCCATATGCTGAAATATTGAAAGGTACTGCCCTGCATGTTTATGTGAAAGGG

a score=12132
s chr3           104181863 595 + 160039680 AATAACTCATGAAAGAGATAATAAAAGTTTATGAATCCTCATCTCAGA-AAAGACACATTCACTAAACTTCTGTACGAAGCTTCAAAG----GTTTAAAT--CTAATGCCTAGATTTAAAGAAATATTGATTTGGATTCTACATTTTGAAAAACCTATTATACCAAATTAGACCATTTGCCTCTTTAAAGGTTGGAGGTAAATAAAAACTTCTTAGTGCCCTTTTAA---ATACTATTT----ACTT---CATGGTCAAGCAGGT-------------------------------------------TTTATAGCAGTCATGCTGATTTA----------------------------ATGTGGGAGAGGATCCAGGATGAAATAGAAGGAGGAAGCTAGAGGAACAATGGCAGTGTT-TGTGGACTGTTACCAAAGTTATATACTAGTAGAAAATATGACACATAATTGTTTTGAGTTTTTTCTGCTTTTTCTTTGTTTTTGTTTTGTTTTATTTCAGGTTG-----AGTAGTAAATGCCATGATGCTATACTATGCCAAGCTGGCTACAAAGAATGTTCAGCTTAGTTCTGTTTCATC-AAAAATACTTCTCTAAGCTAACAATTGGTCCTCTC--AAAAGTTTTCATCTATAGAGCTATAGACTCATTTAAAATGTGAAAAAGAAATA
s HiC_scaffold_1 114657470 633 - 233722169 AATaattcatgaatga---aataaaatttgaaagacccTCATCTCATAGAAAGGCATAGTTACAAAAAGTTTGCACACCACCTTAGAGAGTTGCTGAAGCTCCTTAAGCCCAGATTTTACAGAATCTTAATTTAGATTCTCTATTTTCAGGAGCATATTCTATTGAATAAGGTTATTTGCCTCTTTAGGGGTT-TAGATAAA-AACAACTTCTCAAAGTTCTCTCTAATGATACTATTTAATGACTTACACTTGGTCAAACAGATGGGTGGCACTACCTCGTTCACTGTCAAATGTaatgacacagaatttttaaCTGAACATTTGATTTATCTAACAGGACCCTTAAGCATAAGTACCATCTGTGACAGG--TCTGAAATATGTAAAAGAATGAAGCTACAGAAACCACAGAGATTTTCTGTGTATTGTAAGTAAAGtcatacatatgtataaaatagGAAGCATAGCAGC------------------------------------------cctcagggagaaaaaaaaagtaaatgcattAATGTTGTACTATGCAAGATTGGTTAGAAAGATTGCTCCATTTAGCTCTGTTTcatcaaaaaatatttctcagtGCAAACAG--AGccctctcaaaaaaattttaatctataaag--------tcattaaaaatgtataaaagaaaca

a score=9313
s chr3           104187167 818 + 160039680 cccTACACTCAATTATGAGACTTACAGAATTTATTGCAAAAAAAATTTAAATTAATCAAAGTACAACATTCATTAAGCTAAATGTTTTTACAAAATATTTTAACAGTCATATAATAGCTGTATCTGCCAACATTAATTTCCACCAACTAATC-ATGATGCAGCTGTGATGAATGCACTGTAATACATTGTTCCTAGTTCACCCTAACATCCTGGGAGTTTTCCTTAACAGTTCTGCTCATGTATATTAACATTTAATGTACTTGTCATTATTCTTCACATTTTCGTTGGCTTCTAAGTGATAAATTTATTCTCTGTGTGAGAGTGACCAGGTTTCTCTGAATATCAAGCACAAGCACTACACTAAGACAGTAGGAagctacacgtggtggttcatgccagtaattgtagcacttgggaggcataagcaagaacaccaagagttctaagcaacctgtgatgcacatgaaaccctgactgagttggggatagacagtgGTGGAAAATAATGAGAAATTCTAGTGTGTGCTGACCATAGTTCCTGAACTCAGCTTGCATGTATTTAATCTTCTACAAGAGACGTCAATACATGAAAATAAAAAGAAAACATTAGGCAATATAACAAATGATCATCCTGGGCAGTTAAAACATTCTAAGCAACGATAAAATGGAGCA---CTCT-----TGGTTTACATTAATGCAGCAGAGG------------------AAGAAATGAAAA---AGAAAAGTAGACCACACTAGTAAAATTTAAAGAGGGTGTATGTGTATGGCAGACAGGTAAAAGACCTTGTCCAAGAAGACTATGCAGCC-------ATAACGTGGAGATCTCT
s HiC_scaffold_1 114662143 700 - 233722169 CTCTACTTTTAATTATATGAC--ATAGAATT-ATTACAAAAA-----TCAGTTAAACAAAGTATGACATTAGTTAAGCCAAATGTTTTCACAAA-TATTTCAATTGTTATATAGTAACTTTATCTGCCAACATTAATTTCTCCCAGCAAAACAATGATACGGCAAAAAAAGTTTCAC--AAATAC---------AATTCATTTTGA-ATCTT-TAAGTTT---TTAATACCTCTGTTCCTAAATGTTAAGCTTTAGTGCATTGATCCAcacatttcagaattttattagat--------ataaaataaattactatgATACTCTCATTAAGTCT-------------GCACAAGTAC----------AAGCAGGCCTCTAAATATTCTAATTAA-------ATATATAGCTACTGGGGGG----------------------------------------------------TCACTGGGCT---------------TAAACACTAATGGGAAATTCAAGTGTGTGTAGCACATAA-TCCCAATCTAAACTTG-AT---TTCAACCACATATAAGAGATgtc-atatgtttaaataaaaagaaga-ataaagcaaCATAACAAGTGGAT-TCACAGACAGTAAAG----TCCAAATAAGGTAAAAAAGCAACAGTGCTCTATGAATGGAATG-ATCAAAGAGGCAGAAGGTGAGACTTGACTTAGATaagacagaaaaatacagaaaagaaaagcacac-aggATAAGTGAAACA----GCATGCGTAAG-------GGCAAAAAACAAGTTCAGATAAGGGTAGGCAACCAAATTAGACATTgtggagattttt

a score=16045
s chr3           104190769  832 + 160039680 AATATCCCTTTTCTTTTGCCATCCTCTATATTTCAAGGT----------TGATTTATA--ATCCTTCTTCCCCCAAGCTACCTTGTTCTACCTATCCCGAGAAATCACTCTTCTTTAAAGGTTC-CATGCTAATTGTTAACTCCTGTATAGACAATCCTACATATTAGTACCTGACTAATTATATCT-CTTTTATTGATCACAAACACT-TTGCTTAAAAATATTTGCCTAATTTTATTAGAAATAGAATAAAGTGTAAATTTCTATGACTAGTTTTCA-AATTTTCCATAATCAAATCTAATCTTGTAATC--------------------TAAATAAGTCAAGTGAGCTGATTTTAAAAAGATAAAGAGGGATCTAGATACTGGAAGTAAGGATAAGAAGTTAAAACACTAAAAGCTTTAACGCTTAAACAGAAGTATAAGGACTATTCTGAAGTAAAGGACAAACCAATT---------------------------------------------------------------------------------GGTACAGGAGAA-------------------------GAAT----------------TATTCTGAGCTTGAAGT---------------ATACATAAA-----------------GTGGTGGTGGG--------------------------------------TCAAAATTCTAGATAAAGGCACAGAAAGCCATAGCCATTAAAAATAATCTAGGAGTAGAATGATAGGAAACAAAGCAACTA-ATCCATCCCCAGTTACTACTGATGGATACAAGCATCTCGCAATGACCAATCAG-------TGCACATCTCCACTAAGAGAGGATGCTTAGTGAGTGAGCATAGATAGAAATGATCATGAACACAACCACAAAGTTTCGTTCATTTCAATCAATCTGTAGAACAATAACATAGAAAGCTTTTAAAAAATCTAAAATGTCTTTAAATTTTAATAA-----TATCAGGAAGA----CTGAATTATACTCATTTATTTTGGTTATTAGCA-TTACTAATATT
s HiC_scaffold_1 114667317 1022 - 233722169 aataatcttcCTTCTCTGTCATCCCCTGTATTTCAAGATGTTTTACTTTTGATATCCACTATCTCTCCCTCCCCATATGCACTTATTCTACCTAG-----------ATTTTTCTTCAAAGATTTTCATGCTAGTCTCCACCCCCT--CTAATCTGTCCTACACATCAGAGGCAGATGaattatatcttcttttactAACTATATGCACCGCCACTCAAAAATATGTGCTTATGCTGACTT----TAGGATAAAATACAAACATCCATAACTAGCTTTCAGAATCCTCCATAATCTGACCTAATCCTATATTCAGCTTTATCTAAaccaaaagtaaataagt-aagtaaactGATTTAAAAACCATGAAAGGGGAT--GGACACTGGAAGAGAGGGTAAATGGGTAATATACTAAAAACTTAAAAGCTTAAAAAGAAGTATGAAGTCTATAGTGGGGTGAAGAATAGACCAATTCTTTGACATAGCAGAGAACACCAGAAGAGAGGCTTGATCCACACCTGTAAGACATATGTACTAAACTGAGGATTTTGTTAGGCAACAGGAGAAACCATCACAGATCTCCTAATCCGAGGAATGATACAACACAGGGGATATTCAAGGCCTGCAGTCCTGGAAAGGATGTCATACAgaaatcaagtaaaaaaaaaagatagggctgggtatttagctcagctgcataaacaaacacttgcctggcatcaaaaataaaaataaaggacta-----TCACAGCCATTGTAAATAACACAGGTGCACAGTGataggaaacaaagagaaaatgtccCTCTTCAGCTACTGCTGGTGTACACAATCTTCCCAGTAAAAACAATCAGACAGTATTAGGTGTCCCACCAGGGAGAAGTTGGCTGGGGTGGGAG-----------AGgat----------------aatttttattaacttta--caATCTGAAAAGCAAcgacataaataa-ttttaaaacacccaaaagtcctttaaattttaatgaacatTTGTCAGAAAGACTGCCTGAACTATAATTGCTTA-CTTGGTTATCAACATTTACTAGCATT

a score=9482
s chr3           104192282 1317 + 160039680 TAAAAAAATCAAG---ATTCAAAGAAAATATCAATTTCCTTAACTTCAATGAGACAACTTTTGTTTAAATTCTAACAAAATTCAGCATTCACTCAATTTAGCAGTTTTTCAAAAAGTAGTTACTTAAAATGTGTCCCTTTAGAAACTTGATGGCTGAAATGGATTGCCTGGGAAGTAATCATTCACAGAGATTTCCAGTGTTAGCAGAATAAATATGAAAACATGTCTACGATTACAAGTCGGGCTTCTGAACAAAAGATAGAGCTATCTAACACCTAACTATATCTATAAAATATATCACAGATAggtcagtcaggtggctcagtaagtataggtactaccaccaagcctgatcagagttggatcctaaggacaggtctggtgaaaagagaaccacctcagctgtcctgacctctactcacacactgtagcatatacatgagtatacacatacgcataCATATAGGTATAAAATAAATAAAATGCAATTTAATGTTTTTAAAGTAGA----------GAAAACATAAAACTTAAAAACAATACTGTAAATGTAAGTCAATCTCTGAGTGCTGAGATGGGAAAATATGTGCCAATTTAAAACTATTATTCTTTTTTCCCCagacagggtctctctaacatagccttggctattctggaactctctatgtaggccaggctagattttcctggaactcagtatgtagacaactccaagagatctccatggttctgcctctagagtgctggaattaaaggtctattccaccaagaccagcCAAATTACTACTTTCAATTAAAGTGTGTGGCCAAGCATCTCTGCTGTCAGCCAGTAAGTTATGTACTGGTGTT---TACATGATCAGTTCTGTGTTTTTAAATACCTTGCTAATTTTTATTGGTAGCTTACTCAAGGTTTGAGAATGGATTTGGGTTTTTAATTTACTTGTTGATGCAAACTC-AAGGCTGATTCAGCTTATTGAATGAAATGGAA-ATAGTAATAGTCCTACTTTTGTGGGTAGGACCGCTTCTGCATTTACACCAGATTCACCTAGCTGTCATGAAGGAGGGCAAAAAGTAGGAG---AGGAGTTAAACTGGATACACACAATGGAGATGCTTATAGTTAGAATGAGAGGATCCTATTCTATGATGTTCATATCACTTA-----TCAATGGTAAATATTCTAGC-GTAGAAGACAAAGCACAGTC---------TGCAA--CAGGCACTCCTAC-------TCTCACTG---------GGCTAACGCCTGAATTGCCATCACCATCTGTCCATATGACAGCTCTTG-TATAAGGT-------GAAAGTTCTTTATATAGTTAACAAGTTAGCAAATAATCCGAAGTAACA
s HiC_scaffold_1 114668416 1044 - 233722169 taaaaatgttgagcCAATTCAAAGAGAAAATCAATTCCCCT-----CAA-GAATTGacttttgtttaattt------------------------gttcagCAGTTTTTCAAGAATCA-TGACTTAGGATGCATCATTCCACAGACTTGATGGATAAAATGAATTACCTAGGAAATAATCAGTGGCAGTAATTTCCAGTG-TACCAGAACCCACAAGAAAACCTGCCTATATTTACCAATTAGCCTTCTG-ACAAAAGACACAAAGA---GATGCCTAATTATA-ctatcagaagaataaaaaa--------------------------------------attaagctttttaaaa---------taagg----------------------caatttttttgttttgttttgt---------ctttttcctttttatcagtac-----------------cagggatcgaactcat-------gactgcctgcttgcaaggcaggcgcttatgccgctgagctaaatccccagcccca----------ataaggCAAT-TTGGTACACTAAAATGATTATGTATgtgccaatttaaaaaaa-------------------------------------------actact-----gcTTTCCAT------TAAGTTAAAAGTTC------------------ACATGTCCAA-ACATCTC---AGCTTTAACACTGAAATACTG-------------------------CCACTCAA-----------CAAGCAGATTAAGTTGCTGAG-----------------AATAAATTATACATTGAGGTTCTATTTTTAGTAAGTTC-ATGTCTTTAAACACTATGTTAA--CTTATTGGTAGCTTAACCACA--TTGGGTactggttttggtttttaatttgtt------CACAGACTCTAAGAATggttcaactttt----taaaatgtagtctATTAACAGTTCCAGTTATAAAGCTGAGATTACTATTGC------------------------------TGGAAGATGAAAAGTTAAAGTCCAGATATCCAACTGG----------TGAAGATTTCTCCACTTAAAATAAAGAGATCATATCCTGTGTTGATCAGAGCAGTTAGTTACTCATAGCAAAATATTTTGGCTGTAGAAAA-AAAGCACATCCAATCACCAGTGGAAACCAGGCATACTCACTGGGCCTTTTAACTGCTTAGGCAAGGTTACAACCTGAAATATCATACTCATTCATCAATATGACAATTCTTGCTAGGAGGTAAAGACCAAAGGTTTCCTATTTAGTTAACAATctagaaaataatccaaaataacA

a score=70038
s chr3           104204202 3352 + 160039680 TTTCTGACATTGACAGAGGGAGTATGTGGTAGGTCAGTCCTTCTCCTCAGCATTCTGCTATTAACAACAATCACCTCTATACACAAACACTCAGTCACAGGCATCA---AGTCACAGCAA-AACTAGATATTATATTCCACTCCAAGTAG-TGAAGATGGCAACAGTAATAGCTGT-GTGATTCCTTgg--------tat-------tttcttgccacagttttcataggcaacctcccattggccatatacctgactgtggcagaagtgggaactctcatagtgggctg---caaggggtcctagaagtcattctcagaggtccagcttaaaagtcaaccctctgtcctttcaaagact----atgtgactaattctctatattctatcttt----gctccctgcACTGATCCCTGACAGGCACTACAATGTAGTGTGTGACATATTTGCTGTAGGAAGATTATT-------------------TCCTTTCACATACAAACAGC-CAAGTAAACTCCCATCATTCCCATTGTTCATATCCACTGAACAGTCTTCCCAGAACTGCTACCT-----TCTTACCTTCAGGTTTGCCTCACACAAGTAAATTCTCTGTTCTTAG----AGTCAGCTCTCTGTGGTCTGAGCCAT---------GTGCCAGTACAGCACAATCTCCCCTTTCAGTTGTATCAACACCCATAATAGATAAGCAAG----------CTTACACCTAAAATACCCCTGATCATCC---CACCTCACAC---ACTCCCTAAAAATTCCCAGCCAGAAAACTTACTTTCTCTTACTATATGCCCTGTTTAC--GCAAAAGCAAAAAGTACAAGTG-----TGGCCAAAC---------------------AGGCCAGAGACAACATTAGGAGTCTACCTAACACACAGCAGCACCTG---GAAGGAATCTGACTCAAAGTGTTGTAGACAATCTCTTTAGTTAGAGAAATATTTTCTCAATGCTTAAACAACTAAGAAAAAAAAAAAAACCTTACTTGGATACTAAACTGTTATATCATCTAAAAACATT-ATGATTGTTTAAATTTTAACCATAAGATATAGCAATATGTCATGCTAAAAATGCCCTGAAAAGTTGTGGtatataataatttaaattatttCA-GTGCTTCAACTTCTGGGTTACCACTATGTCTAACTACATTCATGAATGAAGACAGTCTCAACAAAC-AGGTCTAGTACATAATACTTAATCCTAAAAGAATACAAACTCCTTGAAGAATC---------TCAAG-----TTTTCATCAAATTTCTAGGTGAATTCTTATACCAAAAACCAAAACAATGAAAggaatgagatgagctgggttctagtccacac----------------------tctgtcactGCTTAAGATTCAACTTCTTT--CTTTGAAGTCATGGTACTGACTGGATTGATGTAGTTCTCTCCAGTTGATGACAACCTGTAAACCCGAATAGAAAACCTAACAGCACAA-------AGAGCAAGAGGTAGCAACA--CCACAGGCTGCTTTGAACTGCCTCTTCAAAGGATTAATCTTAATGTAGAGCACTTGAAGACTGCGGAATAGAGGTCTGTTTGACTACAATGAGTTATTCTTCTATCTAGATTAGATACATTTTATT-AAGCAAACTATACGTTGAAAAGAG--TGCATGCTTATAAAAGGCCATTAATTTCAAAACATACCCAATTCTGTGTTCATTATAACAATTTCTCAGCTATTGGCCTCAGGATAAGTGTGCTAACACCTACCTACCGGGTTAGTAAATTTTACAAGAGGACAGGAAATATGGGA----------------AGGTACTAATATCAAGTCGTCCCAAGTAAGTTTATTATAAAAAGTATTCAGGCTTTTG-ATATAACTGCTTAAACCATTCACTTATAAATGTAACAATAACTTATTCTAATTTTCTATTTGATTAATAA-TCTT-----CAGTTTA----------TCTGGACTAATTAAACTGTACTACTACAAACTTTATTTAGAAATAGAATCAAACAATGAACCTTTT-AGTATTTGTCCAACATTTTACTACATTTAACACCCACT----CAATTCAAAACTG--------------TAGGGGAAGTTAGCTTTTTTTTCAGATATAATGAACTAATAATAGTCTACCCAGTGAATGAAAAATGAAGGCCTGATGATGCTCCTGTTCGCGGTTCTCACCATGAGAACTTTCATGTGTTCATCTCGCTGAGCCTTGGTTTCCTTGTGTATAAAGGGAAATT------CTTAAGGAAGACGT-----GAATGACAGCATTTATGTCCTTATAA----------------------------------------GCCATATCAGATAGGACAACTAGTATGTCAGGACAAGTTCTCAAAGCAGAAGAATCAGATCAGATTTGCAACACAGTGGTCAGGAACATGAGGTTGCCACCAAAAGGAAGTTGAATATAAT-TTTTACTTATCAGTACTATATCATAAGACAATTCTCATTAAC---TCTAAAGCTA----AAAGAAATTAAAAATTTTTATTAGTATTCCCATCCTGT-------CAAATATTTAAATTGGTGAATAGACCCACTAGCTAAAACAATAAAATTATGACAAAATATTCTGCCCCAAATTACTGAAATGTAATAAGATATAGTTTTGTGAACAGAGGTAAAAAATAATGGATTACTGAAATAAATTCTATAGCTCAGTCAATACATGGAATTAACATTGGAGAACTCTAATTATTTGAGGCTTCTAAAGTAGAAGTAGTAAATTTCCAAATATGGCCAAAAGACATCTCTAGAAAGTATAAACTAATCTAACAAGTATAAGTATGTCTCTGTTTTGATTCTTATCAGCAAATCATACCTAATCCAAATGTTTCGTTTTTTGTTGGAATTTTTGTTGGGGGGAGGGATGGTAGAGCTATTTGGGAAAttttctttttgagacaaggtctcagacatcccaggttggcctcaaatttgctacatatcaaaggctaacattaaattccgatccttctgcctacatctgaatgaagtacaggtacatgccgccacactcTGCTGAAGATGCTCATTTGTACATGCATATTCACCAATAACCTATGACCACTTAATACCTACTAAAGAT----CTACTAGATGACAGCAGGCAAAACCCCTGTGAATAAAGattaatatttaaattattgtttttagccaagtatggtggcacagacctgtaattttatcactcaggagacataattgcaagcaaaaagatcatgagttcaaggctgtctgggctacacagtgatgcctgtcttaaaaatatatatattttatattataaaaGCTGAAAACATTAATACTGTAATTAGAATATAAAACAGCataaaatttaaaatatttttttaaaaCAGTGCAAAATGAG--------CACTTCTCCCACTCCTAGGCTCTCCACTCTTTCTTGAAATATCTCCACTGCCCAGTAGAGGTAGAGGGAAAAACAAATTTAACAAAGAATTCAGATTTTATTCTGCAATGTCTCCCAAATTGCTTTTTGGTTATTAAACAG
s HiC_scaffold_1 114672138 3196 - 233722169 TTACTGGCAGTGGCAGAGGCAGCATTGGCCAGGTT-----------TCAGCATCCC------AGCAGC---------------TGGTCACTCGTTCAAAAGCATCAGAAATTGTTGGCAGTGGCCAGATGCTGCATTCCACTTTAAGTAGCTTAAAACAGCAACAGCAG-AGCTGTTGTGGGCCCCTTGATCACAGCTACACTGGCGTTTCTTGCCACCATTT-CACAGGTAACCTCCTATCTGCCACTTTCCTGACTGTGGCAGAGGTGGCAGCACCCATGGTGGGTTGTTCCAAGGTATCCTAGAAGTCATTCTCAGTCCTCTAGCT-------------------CTTTCAAAGATTCCCAACAGAGCTAATCCCCCATATCCTATCCTTTTCTGTTTCccata-gaaaccctgactgatactGCAAAGGAATATATAACGGAACAACTA-AAaaagatttttcatgtctatattcATGTTGTTCTTTCACATACAAAGAACATAAACAAGCCTCCATCATTCCTACTAC-CTTATCTGATAAACAGTCTCCTAAGAAGTGCCACCTGGGTCCCCTATCTTCAGCGTTGTCTCATCTTGGTGAGTGCTCTGTCTTCTGCAGTGACCAGCTCCCCATGG-CTGAGACATCATCTTGCAGTCCTCACCCAAGA-AGTACCTCCTTTCAGTTGTATCAGCCCTCTTTAC-GTCAAGCAAGTTTTGAGGACCCTGAACCCAAAATGCCCTTTACAGTTTATTCACCACATACCTGAGTCCAGAGGACCT---------GAAACTTACCTTCTCCCATTTTATCCCTTAGTCacatggagaaaataaaagtacagtTGACTCTTACTTAGACTTGTACTACCCCACAGAGGGGAGGCAAAAGATTATGTTAGAGGACTACC----ACAAAGCAGTAACTACACAAAAAGGTTTCACTGAAAGCATTATAAAGAATTTCctttattggaaaaatattttctcaaagttaaaacaaacacaaacaaa----------tacTTAAATATTCAGTTGTTACATGAGCTAATGGTTTTCATAACTGTTTAAATCTTAACCATAAACTATAACATTATGCAAAGCTAAAAATACCTTGAAATTTTATGGCTTATGATGATTAAAGTTCTTTCTTATATTCCAACTTCTGGGTTACCACTGCCTCTAACCACACCCACACATGCTGATGGCCT-AACAAACTAAGTCTAGCACACAACACTTAACTCCAAAAGAATGTAGAATTCATAAAGAAACAGGATATGTTTAAGAGTTTGTTTCTCCAACTTTCTACACAAATCCTCATGCCAGAAACCAAAACAATCAAAGGAACCATCCAACCTGGGTTCTACTGCATGCTCTTCCAATTCATGCTATGATTTCTGCCATTGC-TAAGCCATAATTTCTTTACCTATAGGGTAAGTGTCTTAAATGAATTGCTTTGGCTCCTTTTAGTAG-TGACTGACTTTAAGCTCAAACAGAAAACATAACAGCACAAACCTTTGAGAATAACAGACAGCAACACTCTACAACCTGCTTT-AACTGCCTCTTTAGTGGATCCATCTTAGTGTACAGTACTTGAAGCTGTAAGAAGAGAAGTCTACTTTAAGACAATGAGTTA---TTCTGTCTAGCACAGCCAATTTTTATTGAAGCAATATATACTTTGAAAAGAAGCTGCATACTTATAAAAGatcattaattttagaatttcttcGTTCCTACAATTACCAGAGCATTTTCTAGACCACCTGTCT-----TAAGTGTGCTAAcaaacacctacctggcaagtgaaCTAGACAA---GGTAGGAAATATCAGAATGAGATATTATTTCCAGGATCAAATATACAATTTTCCTAATTATATTTA-TGTTAAAAGTACCTAGGCTTTTATATGTAACTACTGAaactattttcctacaaatgtagCAAACATTTAGAGTAACTTTCCATCTCATTAGTAAGTCTTATAACTACTTTAACATGAAGTTACTGTACAGATTAAACTGCACCACCACAAACTTTGTTTAGGAACAGAACCAAGCAATGAAGTTTTTAAGTACTTGCCCAATAGTTTGCTGCTTTTAACATCCACTCAAACAATTCAGAACTGTAAGATTTTTCCactagagaaaaacaaagatttttccA-ACATGATGAAT---TAATATTCtacccagaaaggaaaaaagg---------------ttcAATTCACAGTTCTCCTTGTGTGAATTCTGACATGTTAACTTTTCTGAACCTCAATTTCTTCATGTATAAAGGGAAATGACAATACTTAACCAATTTCTTTACAGAATGCCAACATATACATccttataaagaaaataagagggAGGCAAAATGCTTTGATAATACGGCTGCTATTTAGTAAATGACAGCTAGCATATTGCAACAAATTCCCAAGTCAGAATAGTCCTACTTGACTTAGATCAAGGTGGCC-TGAACTTGTGGTTATAACT-AAAGGGAGTGTAACATgttatttcactcagcattac-ATTGTAAAAGACAGCTCTACTCAACAAATCTAACTCtgttccaaaaaaatt-aaatttttaattagcaTGTGCAttccattttaaagtaaatactgAAATTAGTGAATAGAATCATTaactaaaat--taatattttggcAAAATGTCCTG-CCAAAGCTACGAAGATGAGTTAAGATACAGTTACGTGAGCAGAGGTGAAGACTA------TATT--AACAGATTTCATGGCTTAATTAACCAATA----------TGAAGAAGTCTAGTCTTTACTGGTTTTTGTAGTAAAaccaataattttcaaaatataatcaaatga----tCTAAAAATTCTAA-----------------------GTCCCTACCATGAGTATTATTGGAAAATCATACACAATAC-----------------------------------------------------CCTGg---atgttcatttt-----------------------------------------tatatat-----------------------------------------aataa-----------------------------------------ttcTATACATATATTTACGAATAACCTACCAAAATTTAATATGCACTAATGATTCAACAATCAGATGATA-CTAACAAAACTACTA-----AAAGTGCATTGTATAA------------------------------------GTAAACT---------GAAGGC-TGATACTAAGC-ACaagctcctgagttcaa---tttctgtaccaaa----------------aaaaat-----tgttttatggtATCAAAGCTGCCTATATTAATTCAGtaatccaaa----------------------------tttttaaaatagtgttaaaTAATACTCATACCACCCACCTCAATCTTTAAACCTCCACCCTTATTCAGAATACTTCTGTT-CCCCCCagaggaagcaggaaaa--aaattaacagaagagGTCAGATTTTATCCTGCAATGTTTACCAAATAGTCTTTTGGTGATTAAACAG

a score=176943
s chr3           104215337 8262 + 160039680 [encoded data, 9163 characters]
s HiC_scaffold_1 114679406 8222 - 233722169 [encoded data, 9163 characters]

a score=3655
s chr3           104226997 99 + 160039680 GCCTTCCTGGGTTCCTGGTTTATGACTCCTTCCCCAAGGCAGGCAACAAAAAAGAAATTTCCCTTCCGGGAGGCAGGCCAGAAAAACTGACTTTCTCTT
s HiC_scaffold_1  60406778 99 - 233722169 GTTTTTCACAGTTCCTGGCTCATGATTCCCTTCTCAAGGCAGGCTATAGAAACAAGAATTTCTATCCCCAAGGTAGATCATATACTCTAATCTTCTTCT

a score=4391
s chr3           104227354 171 + 160039680 ACTCTGATTTTCCCCTGCCTTTCTTTCTTGGAGCTGGCTGTAAAGAAACTCTCTGACTCTCC----TTGTCTAGGAGATCATAAAATCCCCAGT------------CTTGTCCACACCCAGCAAG-AAGGAATGCTGCACAAAAGAGGCCAAGGAGAATCTGGACAGACA-ACTTTGATAGGCTCCCCA
s HiC_scaffold_1  78499850 187 - 233722169 ACTCTAAGTTTCCCCTACCTTTCTATATAAGAAATGGCCCTAAAGAATTTCTCTGACTTTCCTGTTTTGATTATAAG-TCACAAGATTCTTATTACAGAAGGGCTCCTGGCCCATACCTGATAGGTAAAGAAAGCTATAACTGAAGGGTTAA-AAGAATCTAAGCAGACAGGCCATGCTGGGTTGTCCA

a score=5405
s chr3           104227364 215 + 160039680 TCCCCTGCCTTTCTTTCTTGGAGCTGGCTGTAAAGAAACTCTCTGACTCTCCTTGTCT-AGGAGAT--CATAAAATCCCCAGT------------CTTGTCCACACCCAGCAAGAAGGAATGCTGCACAAAAGAGGCCAAGGAGAATCTGGACAGACAACTTTGATAGGCTCCCCAGTCCTCTGTGAGCCTCTCCTGCTT-TCTCTGTCCAATCACCTTCCTACCCCGGTG
s HiC_scaffold_1 179411479 219 - 233722169 TCCCCTGCCTCTCTATCTTGGATCTGATGGGAAAGAAATTCTTTGACCTATCTTGTCTGATGGTATCGCATCAGACTCTTATTTCAGAAGAGATCCTGCCCCATACCCGGGAGGAAGGAATGCTG--CAAGGGAAGCTA---AGAGCCTGAACAGCAGACCTTGCTGTCTTTCCCACTCATCCAGCAG-------TGTTTGTTTTTGTCCAGTCACTTATCTGTactgttg

a score=59750
s chr3           104233241 2222 + 160039680 AGAAACTTCTTCAGCGTGAACTTTTGGAGGAATTTGATATCCCGTGGGACTTTTAGGGTTGGTGGCATGGCTTGCACAGTAGGTTCTAGACTGTGTTTATTTTGATCC----------TCTGTACC-AAAGGAAATTGTTTTAAAGTGAACCTACATCAAGTTCTAC-AGAATCTCATAGATCAATACCCAAGATACA--GGCAGGGAGACTTGGGAAATTAG-AAGAATTCAGTTTTGCACG-ATGAGTGACTAACTGGCTTAGTTTTAGAAATCTAGGAAAAATAAATACCAGAGGGAAGTACTCATCAGCTGTGACTAAGCTGCTCTCCAACTGTAAGGCTATCTAACTACCAAGCTCATTGACTTACAGCGTTGCTGAAGTTTGGAAACAA---TGGAGGTACACCTTTTCTAACCCAGATCTCAGCTTTTCCCAGACACAGAAATA-AGCACCGTGAAG-----------------------------TAAGAGGCTGAACCCCCAATTCTGTCAGGGTGTGAAGCCCAAACCTTTGGGG--AGCTGGTGCTCC------TGAGCTGGCCCCAAGGTGAAACATGCACTGCTACTTCCATTGGCCACAGAC---------------------TCCC-------------------CCCACCATCTTAGTTC-----CCAAGTCATTCTGCCCAGGCTAAAATGTGctcccttcatttctcttctctgaccttggca-gatgcttatgtaactgcttggccttttcacaaaAA-TTAGGCCCTGTG----CTGGGACAGGTGGCTGACTGTATCAAGAATCCTAAACGTTGAAATCCTC-AAATATATTATTTTAAAGGTCATGG---TTCATTTGGATTATAAATTATGACATTACTATTGGAACCAGTCTGGACTGAATCTGAGGATACCCAGAGTGGCTGCAGCCGAAGAGTCTGTGGGGATAGACGGTAGTAGAAAG---TTATGAAAAGAATGTTGGAAGGAGCCCAGCCCCTGTTTGCTAATT-ACGAAAGCC-TAGGAGATTATAGAACACTGTGTCAGTATAGCTACAATGGGGTTTTCCACCAAGACAGATATGAGTTGAGAGAGAAGTTATTCTTTTAATATTTGtttattgttgttttatgtatgatgttttgtctgcatatgtctgtgcaccatgtgtgtgcagtgcccAAGCTGTTAACGGTAGCAGATTATCACTGTGATGTAAAATTGTTCATTATTTGTGTTTTACTTATACATTGTCTCATGTCATCAAGAACTTACGAATTTATAGT-CTTTACATTAAAGAATGCTTAAATCATGCACATTTTTTTATCTTGTAAGAAAACTTCAAAACAAATGCAAAAGAAAGTAGTAAGGATACAAGGAACTCTATGT--ATCTCTCTTGGACTAGAAGGTTGTCAAGATGCTGCTGTATGCTCTCCATCTTTTCTT-----CTGTCTTGCTTTTCCACTCTGTATCAGCGTCTTGCCTGTATTGTTTCCTATGCCTTTCTGACCTGATTTACTCATCCTAGAGACATTTCCCTGTTCTCCAGCATAGCAAGATGTAGCCAACT-CTCTTAATTTCCTGTGAGCAGCCT-AGATCAGCCCATCTCTCCAGGTACATAGTATCTCTTCAGTGTGCTTTAGCTTGTTCT-----TTAAAGGC-ATAAACACAAAGCAATGTTAAAACAGGAATGATATTCAGACACTTGTAGCCATTACCAACCTGAG------AAAATAATTTTTTTTaatggcagcaaataaataagactacataagtgtgttaaaatgaatctttttttaaattaaagcagatttgccagca-cataaacttgcctctagg--taactcttctcggagttgctttttttccatctaggaaatgttTGGCTTCTCTGGGATTCTTT-AACCAGAATTTCATG-TAGCTCTTACTGG-GGAGGTTAGCAGCTTGTATACTTGTATCTTCATTTTTCTTTCATCAGTGTTACAAAAGTGCTAAGTGACATCTAGCACCTTCTCTTTTCTTCTTAGAACAGTTTTCATCTTCTACTTGGTCCCTAACAAATAAAGTACCATTGCTCCGTTCCGCCCTTATAAGCTCAAAGACGTGCGTGCTGACCAATGAGGCCATATTGCTTCCCTTTCCCTCCTTATCA-AAGTGAAGAGTAC-TAAAAGCCCACAGTCACTGTGGTTTTCAACTGTAGCGACAAACAGAGTGCAGAGAGAAAAGGCTGTGCATCACA-TAAGAGAGTGCTCTCCACTGGGTTTTAATTTGAGGGTTGTGATGAGGAAGGCTAGGCTTCTCAGTGAGAACTGAGAATCATGGGTGC
s HiC_scaffold_1 114695811 2259 - 233722169 AGACATTTCATTATCATGGGCTTCGGGAGAGATTTGGGACTTAGCAA-ATTCCCAGACCTGAGT---TGACTGGTGGAAGAGGTTCTAACCCATGTTGATCTTTATATAGGGGCATGATCTGTAGCGAAAAGAAATTATCTTAAAGTGCATCAAAACAAAGTTTTGTTAAAAACTAACAAAGTAACAGCCGATGTACATGGACTGTGAGACTTGGGAAATTACCAGGAATTAAATTTTGAATGTAGTAGCATCTAGTTGGCTCATTTTTagaaatttgctaaaaataaacaCCA-AGGAAAATATTCATCTA-TATGAGTAAAATTCTTTCCAGTTGTAAAAC-ATCTAATTACCTAAATAATTGATGCAGAGGATTGCTAACATTTAGAAACAACAATGGAGTTAGACTTTTTATAACCAAAATTACAACCTTTCATAGTGGCAAAAGTAGAGCGCAGGGAAGGCAATAAAGTGAACAAGGGACAAGTTATTCAAGGATCCAAGCTACCAATTCTGGAAGAGTGTGGTACCCAAACATTTGGGGGAACTTCCTGCTCCCTATACTGAGCTAATA--AGTGAGAAGCCTGCCTTGGTGTTCCCATTGCCAGCAGAGCGGAAACCAGTATCATATAAGTCCTGTGATCTAAGGAGGCAGGTTccacctttttctctctctctccaaatcATTCCTTACAGGCTGAAATGCATGCTCTTCATT-CTTTTCACAGACCTCAGCATGATGCTTATGTAACAGCTTGGCCTTTTCACAAAAAATGAGGCTCTGTGTGCGCTAGGACAAGTTGCTAGCTGTATCAAGAATTCTAAACATTAAAATCCCccaaatatagtattttaaaggTCTTGAGCATTCATTCAGATTATAAATTATGGCATTTCTACAGAAATCAATCTGGACTGAATCTTAAGACATCCAGCATGGCTGGAGCAGAGAAGTCCATGGAGACAGAAGGTAGTAGAAAGAATTTGTGAAAAGAATGTTGGAAAGAGCCCAGATACTATTGGATAATTAATGAAAGCCATAGTGGATTATAGAACagtaca-aaatataatcaaaggaGTACTTTCAGCCATGGAAGCTAtgagaaattgaagaagtaattttt-----------------------------taatgCATACTCAGTAAACATCAGGAAAATAT------------TACAAGCTGCTAATAATAGCTAATTATCTCTGAGTGATTGAATTACCAGTGCTTTCTATTT------GATGCCATCTCATTCTAT-------TGATTCATTTGCGTTGCTTCACATT-TAGAAAGCTTAAgttatataaa--catttatattataatgaAACATTCAAACA----CAACAGAAAGCAGGAA------AATGAACCCTATATGAATGTcacttacataaaacaaatatcaagATTGTGCCATATCGTCTCCACCTCTCCTTTTttactttcttgctttttgttCCTTCACCAGTGTCTTACCCTTGCTGGTTTCTGTGTCCATCTGACCTGACTTATCCATCCTTGATA-ATTTCCTTTCTCTCCAGCATAGCAAGATGTACCAGGTTCCTCTTAATTTCCTGCCACAGATCTGGGATCAGCCCATCTCTCAAGGTGTTCTGTTTCCTTTCAGtggattttaaattgttttaagaaaCAAAGGTAATAAGCTAATAGCAAT-TTCATACAGAGGTGATCTCTAGA-AATTATGGCCGTTACCATTCTGAGAGTtgtaaaacactaataaaaaatatcattaaatgaATAAGAATATGTAAACCTACTaagaagaaac------------aacacaaatttgTCAGCATTAAAAACTTGCCCTTGTGAATAATTCTTTT--GAGTGGC-TTTTTTCCACCTAGGAAGTATTCAGCTTCTTTggaatcttttaaataaaaatttcaagccAGTTCTCTCTAGTAAAATTTAGCATCTTTTATACTAGCAcactcatttcattttcttaagtcTT--AACAGTGCTATGGAACATCTaatacattttcctttctgtttagaGCA-TTTTCATTCTCTACTTTAGTGCAGACAAATAAAATATCGTTGTTGCATTC--ACACAAAAGGACTAAAGA----TTTGTTAACCTTTTAGATAATGATGCTTAACTTTTCCCCCCCATCAGAAGTGAGGAATGTATGGAAAC---CAGTCACAGTGATTTTCAACTGCAGTAATTATCACAGTGTGAAGGGAAAAGTCAGTCTGTCCCATTAAGGACACACCCTTCAGGaattttaaatttgggaggtggGACAAGGAAGAGTAA---TCTCAATGAAAAACAAGAGTTTCAGGCAC

a score=51819
s chr3           104236426 2028 + 160039680 taagagctgctgtggtcacggtgtctttttacaatgacagaaccctgactaagacaGCTGACATAATACAATGTAAATACACATGTTTGTATaataataaccaaagcatttcgtgtttcctatgtgccagacatcatccctaaaatccttacatgtgtttaactct----cactcttagcaagaagc-cttatgaagcatcaattgcctttatttttataagcaggact-ctggggaataaaagatgaataag-caggagcccaagaccactcagccatgacaggagaagtcagcatttcaatcagggtaatctggcATTAAACTCACTAAGAGATTTTTCTTTTTTTTTTTAAGCAAAATAGAAAAATCTCTGAATCTAAAAACCACAGCTAGGGAGAAATCA--CTGTTTAGGGTTGAAA---TACCAGAGCCCTTCATTTTAAGAAAACAAGAACACGCTGGTGCTGGTATCCAGCATCATCATTATACTGTTCTGGCTAGCTCAGAGCAAACTAAAACACATCTGTAGTGTTAGAAAGCACGTTCTAAACTAGTATTATGTAAGCGACATGGGCGCAGGGACAACACAATATTTGCTAGGAGAtttgagacagggactcatgtcactcaaagttacttgggaccagggaatgacgatgaactagtgattctcctgcctccaccttccaagtgctgatattataagtatgcATTGAAACATGCAGTCTGTCCATCTTTTTCCCCCCAATAATTGTTTCTGGCACATGAGAAGTAAACAGTATGAAAATAAAATAAGTGGTTTTGTATAAATTGAAGTTGATAAAAGTGgtgtgtgtgtg-tgtgcatgcacacatgcttgtgtgtgtgct---------------tgtgtgtg----------------tTTTCAGGGGTGGCAGGGGCCAGATAAAGCTACTTTTG--------AAAAGTATT---CGTCCTAACTATA-----GGACAACAGACCCTTTGT-GTGTGAG---TTCTGTTACAGAAACCACAAGTGAACAAAGCAATCGAGTCTCAGAGCGAGGTAATTTACAGAGATGTTAG------------------------------------------------CAGAGCTGCGGGCCCTTGTCTTTGCCTATTATCCCAGCACATCAGAGAAAACTTTTCCTGCTCTCTTTTAACTTC---CACAATGCTGCTGTGCTACACCAAATAACATGTCTATAGCTTTCTGCCTCAACAATTAGTCTTTGTTCTTAGCTAAAGCTTTAAAGGAAAGTATCACGTACTATATAATATTTTTATAGTCAAGTTTTAGGAGTACTTTGTTACACAATTTTAAAGTTTTTTTTTTTTTAAGT-TTTGGATCATCTATATATTTTAGGGATGACAATGGTTTACAGGCAAGCCAGAGATGT---TATTCTCTCCAATTTAAAG-TGAATTCTAATCTTTCACTCTTTGCCCCTCTGAGCAAAAAGATCAGTATTTATGGTTTCTACGAACGCGTTTTGTGTTTTGGCATTTGGGATATAGCAGTGGCAGTAAAAATCTGGTTGTTTACATCCTTATAAATGATTTAGCTTTCCTGTTTTGTCAACTCA-GCCCTTTAAGTCTCCTGTGAGCTGGAGTAAGAATATCACACCACTCGCAGGGTTG------------------------------------------------------------------------------------------------------------------TCTGGGAACATAAAAGGAAATGGCTGTGTGCTGCTCACAGATGAAGCCTCTATTCCACTGTAGACGAGGAAGCAGGAAACATAAGCCTAGCCGTTATAGATTTAAATGGTTTGCCTGTCGTTTCATAAAGCACTTGTTTCATTTACTCCTCCACGTCTGTGCAATTCTGCTCAGTTACTGTGAAGCAGAAAAAATTATCAATTAGAGGCGCAGTGTGCCAGTCCTGAGTCCTAGGCTTCGGTACCCTGGTGTGTTATGATACCCAGAGCGTTACCCTGCTCCCCGCCCCAGCACACACATCACAGCGGGATGGGATGTGCTCAGAGGCTGGTTGTGTACTGAGAATTAATAGGAGAAAAACCTAAAAAGGCAATAGGTGAAGAAAGAAAACTCCATCT--------GCTCTGGAAAGTCACCACAGTAGGAGTACAGCATGGATCTCTGACCTACAACACTGTGCCTCTT
s HiC_scaffold_1 114698367 2085 - 233722169 TAAAACCTACCctgtttatggtattttgttataaagcCA-----------AAGATGGCTAAgataatgta---taaatatatatgtttaagtggTAATCCGTAAAATGTGAGGAAGATT-TACACGTCAGGCAACATTCTTAAATCCCTTCCATATATT-AACTCTTTTACTCCTTTAAAAACAACCACCAAACAGGTACTGATTACCTTCATTTTTGTGGATAAGAATACTAAGGAATGAAGGCTGAATAAGTCAGAAGCCCAAAACCACTCAGCTAT---ATGGGAAGCCAGAATTTCAATGAAGGCAATCTGGCATC-----CATCAGGG-----CTTTTCTGGTCcctaaacaaa-tagaaaaacc-cAGAATCTCAAAACCACAACTGGAGAGAAATTATTCTgtttaagacaaaaaaaacacCAGAGCCTTTCTTTTTA-GAAAGCAAGAATGAAA-------GGTGGCCACTATCACCATTATAGTGTGGTGGATAATGTG------ATAACAACATATCCA----GTTAataa-------------ttgtattgttt----------------------------tatttga-aagagaactGAAACGTGGT----TATTATTTATAG------------------------------GGGTATTTTTCTCATAGCATTATGTAAG----GTCAGTGTAGGTGAGGGTAA------------TATTCATCTTTTATC-----ACAATAATTCCTAGCATTTAGTAGGTAAATAATGT-ACTATATGAAAACT--TATTGAATGAATTGAACTTGATAAAAGCTCTGGATTTATGACACCTATGTACAGGTGATCACATGTTGACTGAATTCAGACACATCTGAAAGTGATGCCAGACCATTCCTTTTGTGGgggtaccaagaattgaattcTGGGCCTTGTGCTTActgggcaggtgctgtaccactgagctgcatctctggcCCCTAGACCCTTTTTTATTTGAGCAGTTTTGCTGCAGAAACCACAAGTGACCAAAACAATTGAGTCTGAGGGAAAGGTAATTTATAAAAGTGATAGTGGGCCATACTTTAGAtaaataaatgctattttatagtttaaatttGTCAGGCCTGCAGtttctc-tctttccttgtctTTATGACCCACTGTTAAAAacttttcctatcatcttttaaGTTCTGTCTTTATACTGCTCTTCTGTCTTACACATTA-------AGATATCTACCTCAacatttattctttgttcttaGTTGAAATTATAATCta------taaatacaatacaatatcTTCATAGCCAAACTTTA------------TACATAATTTCGGTTTTTAAGGCTTTCTAAATGTTTGGACCATTTACATATTTTAGGGATGATAAATCTTTATTGGCAAGTCAGAGAagtatttattctttgaagtaaaaaaatgTGTTCTC-TCTTTCAATGTTTGTCTCTATGA-CTTAAAGATCAGTATTTACAACTTCTATAAACT--TTTTGTATTCTGTCATTTGGGGGATAATGGTAGTGGTAAAAATCTGGTTACATACATCCTTGTAAATGATTTAGCTTTCCTGTTTTGCCAACTCAGGCTTTTTAAGTCTCCTATGAGCCAGAGCAAGGATACAATACCACTTACAgtgtttctctccctctttcttttttcttttcttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctctctttctctctttcttttcttctttctttccataaaaGGAAATGACTGTGTGTGGCTCAAAGATACCACTTACATTCCATGGTAGACAAGGAAGCAGGAAACGTAAGAATACTAGTTACAGATTTAAATGGTTTGCCAGT-GTTCCATAAAACACTTGTTTCATTTACTCCTCCAAATCTGTGCAATTCAGCTCAGTTTCT-TGAAGCAGAAATTATTATCAATTAGAGGCACAGTATGTTGGTCCTGAGTCACAGCCTTCAGTACCCTGTTGTGTTATGATACCCAAAGCTCTaccctgctccctgccccagcAAACACATCACAGCAGGACAGGATATGTTTAGAGGCTAAATGTGTgctgaaaattaatag----aaaaactaaaaaggcaaAAAGTTAAGAGATCAAATTTCTTATAAAGCAAAAATCTGGAAAGTCATTACAATAGGAATAAAAGGGTGATGCATGACCCACAAGTCTGC-CCTCTT

a score=11420
s chr3           104247693 299 + 160039680 ccccTCTAGTTTGCGGATATTTTTTGTTTTGTTCTTGAGCTGAAAAAAAACCAACCCAATTTTATTTATTTTCCATTTCTCT-TTTACTGCTTTCAGCTTAAATACAAATAAATAGCTCCTATTTCGTACAGTTATCCCCAGGAAGTGAAAAAAATTTTAAATTACCATACCAAATGTCTTGGTGGATAGGGAATTATGTTTCTACAGAAGTCTTAAGATTAAGGCCTCCAAGAATGCCAGTGGGC-TCATAAGTTTTCATTTTCTCTGCTGAAGTAAAGCCTAACTTGAGGCAAAGTGGA
s HiC_scaffold_1 114712269 274 - 233722169 CCTTTCTGACTTGTAGATACatttt------------aactgaaaaa---tcagCCCAGCTtcgtttatttttcctttctctctttactACTTTTGgcttatatacaaataaatatctcTTCTTCCCTATAGTTATCCACGGGAAGTGAGTAC--TTTTAAATTACCAAATCAAATGTATTTGTTCATAGGGAATTATGTTTTTGCAGACTCTTGATAATT---------AAGAATGCCAATGGGCAtcataacattttgtttttgatattaaaGT-AGGCTTTACTTTAGGCAAATTTGA

a score=19026
s chr3           104250521 453 + 160039680 GAGAGAGAGATTTATTTGTGCCTCTATGACTCTGAAGACAAGTAGTATTCTTGGTGATATGCCTTTAACTGATATAG-----AGGAGTATGATAT-ATGAAGATGAATCTTTAGCTTGTGTGTGATTTGCAGTATAGCATGTTTAGTCTCAGAAGAAAATTCACCCAGAGATTGCATCAGCTGTTACAAAGTGCTTTAAAGTAAACAATCATTTTAATAAGAACTCAAGTATGGCAGCAGTAACCATTTCTTAGTATGTGTAATCACTGCAAGGATTAAAGTTTGTGTCTTTGCATATGATAGTAATGCCCAGAGCTGTTTCCAGAGATTATAACTGTTGCCGTGTAAATCTCCAAACTATCTCTTGATGGTACCCTGAAAGCAGGTTGAATTAAATTTGAGTGAAAGATGAGAGCTTTATTATACATTAAAATGTCTGTGTGTAAGGCATCTTAAAGG
s HiC_scaffold_1 114713518 443 - 233722169 GAAAGAGTAATTCATTTATGCATTTATGATTTTACAGGCACACACTATTCTTAGCAATATGCATTTAAATGTTATATGATCTACAAATACAATTTCATGAAGATGCATTTTAAAC--ATATACAATTTGTATTAGAACATATTCAGTCTCAGAAGA---TTCATTCAGTGatttcattagatattataaagagCTTAGAA--AAATAACCATTTTAATAATATCTCAAGTATGATAA-AATACTCATCTCTTAGTATCTATAATCATTGCAAGGATCAAGGATTGTATCTTTCCATACAATGGTAATATCCATAGCTACTTTCAGGGATTATCATTGTGGCTGTGTAAATCACCAAAATATCTCT--------CTTTGTGGGCTTATTGAATTGAATTTGAATGAAAGACAGAACCCTTATCATACATTCAAATttctacatataattttttttaaggg

a score=40552
s chr3           104252690 1590 + 160039680 atataccgcagttacgtaaactgtgaacaaaagaagtaatggagcaagtgtatgagaactg--tgtagcatcttcacaacttttgtggaaatttaaacttctcacaaaTGTTTCCTTACAAAAACAGAAAACAAACAAACAAAAAACCTTG-TATTTGTTCTTCAGACACAGTACAAACGCAAGTCCACTGCATGTCACCACCATCTAAAGCTATATTGACATTCTAGTCACCCTCTGCTGACAATGTTATGGAACGAAACGGAGAAGAAAATGTATAGGAGAAAGTAATTTCAAGAAAGGA--------AGCTTAAAAA----AAACCCTTTGCAAACAGTGTACAATATTAAAATGTTTTTAAAGAATACATCTTCCATTTTACAGACACCCAAAAAAGAGCCAAGGTAATAAAAATTCACTTGCACTGCATTGTGATTCCATTAAAAGACAAGCAAGCGCCCTGTGTATGCTTTTCTCAGGCAAGGCTCTGTCCTCCGTTATTGCAGTATAGAGCTCTAAGCTGCTATTACCCTCTGGGGAGAGCTATGTTTTGTTGGATTGTGTGTAATGAGGTTGAAGTCTACATGAACCCTCAGAGAGAATAGCTGAGCATCCCAAGTTCttaaaaaataaaaaaataaaaaataaataGAAAGAATCTGCCTGCTGGCTT--TTAAGTGCAAGCAAAGAGA---ACTATTTTAGAATCTGATATATTGTCATCCCAAATGTGAAGATAAATATATACCAGACCATAGTGTCCTCCGC-CCGCCTTTGACCCTTACATGTCCGATTG-----------GATTCACGATGACCATACC-------------ATATCTTAAATATTTAGAATATTATTAGTGACTTGGGAAAGCTAATTCATATCTCTC----TAAAATTTATTCCTCATTAATCTTAATAAGCCTATAAGCAATTTTTGCTCATC---ACCAGTTTAACTTTAACCATGACACT---TAGATTTTAATCTTTCTGATGATTTTGCAAACCCTGAGGTCA--GATCACCTGTGTGTTTCTTCCAAAGGGGAAATTCTAAG----ACCGTGCTTTCT--CTGTAT----------ATGCATCGAGATGACATCTG-------AAGGCTCCTTCACCACCGAGCTGGGACGATCACAGGTATCTCCTGTCATTTGGAAACTGTA-ATTCTTCCAGAGTTCCACATCAA------------------AGTTTGTTTT-------GCTCTAGAAGCAAATGCCATGTGCCTGTCAG----------CTGCAAAGGGACA------------GGAAGAGCAGAAACAATGGGATCAGAAAACAGGATGTTGTGACTGTGACTTCAGGATTTGATGGTGCCT-GATCCCTGAATGGGCCAGGCATAAAGAAAGGCAGTGGC--TGTTTGTTGTCCCT---AATCTCTCCGGCAGCCTCA----------AGACTACATGGTGG----GAGAGGCCACCCTTGAAAAGCAGGATGCAGGGAAAGACATGTTGCTGT-CCTTCCTTCATGTTCTTCCCTCCC------TCCCCTGGTCCCTTG----------------------------------------------------------------------------------AGTGG------GTACTGGG------GATATTTGCATTGCTATAGCATACGAGGGCAGAACTGCCTATATTTTAAGGTTCCGGTTATAGAAATGCTGAATAGCTGCTATTGGCAATGAGAAAGGAATGAGTTTGTCAATGAGAAAGGAATGAGTTTGTACATTAAAGAA
s HiC_scaffold_1 114714899 1760 - 233722169 atgtgaCACGGTAATGTAGGATGTtaacaaaagcagaaatagaGTGAAGATACAGAACATAATTGTAGtatctttgtaatttttctgtaaatctgaagTTATTACAAAGCTTACTTTA----------------------AAAATGCCttactttttctgcttttaacaCAGAACAGCTACA----TTATGTATGTTATTCCTATCTAAAGCTATATTATCATTTTTGTAGGATTTGGTTGTCAAGGGTGTTAAGAGAAATGTATAAGAGAGTGTATAGGAGAAAGCAGCATAAAGAGAGAACATAGCAAaacttaaagataataaaatctttcaaaataatgtataatattaaaacattttaaaaggatgtATCTT----TTTACAGACAAACACAAAAGAGCCAAGGTAATAAAAATTCACTTTCATTGTACTGTGATCCCATTAAAATACAAGTAATCTCCTTGCTTCTGCTTTGCTCAGGAAAGGCTCTGTCCTT--------CAGCATAGAGTTCTAAACCACTAGTGCTCTGTGAAGAGACCTGTGTTTTATGGGATTGTGTGCAACAAGGTTGCGACCTACAGGCACCCTAGGAGAGAATATCTGACTACTCccagttattaa-------------aaaaaataaaaatatagaatttgcCTGCTGACTTCCTTAAATGTGAACAAAGAGAGATATCATTTCTAAACCTTGTAGACTGTAATCCTAAAATTGAAGACAA--GTGGACCATGCCTCAACATTCTCTACTCTACCTTTGTTCCCTTGGTAGCACATTGTTCCTGCTGAATATTTATAGTGACTGTACTTagctattattaaatattttaaata-atgtaattttacTACCATGTTTGGGAGGCTAGGTCATAT-TCTCAACATACAGTTACTTCTTGATTAATCTCAATAATCTTATAAGCAATCTTTGCTCCTCATGATCTATTTGACTTTCACCATTACTCTTACTAGATTTTAATGATTGTGATACTTTTGCAAACACTAATATCATTGTTCACCTATACGTTCCTTCCAAAGAGACACTTGTAGGAATTACTGCATTTTCTGCCTGTGTAGCTACATAAATGCCTTTGTATTAAATCTGTTAGTCATAGTCTCATTCATCACTGTTCTGGGAAGATTGTAAAT-----TTACAATTGGGAAACTCTGTGTTCCTGTAGAGTTTGCCATTAACTGAAATGCTGTATAGTCAACCTATTTTCTTGTGGATTTCAGAAACAAATGTTATACGATTTTCAGTACAGTATTACAGCAAAGGAACAAAGCCTACCTTTGAGACAGGAAGAACAGTGATGAAGGAGAACAGAATGT------TGTAACATCAGAATTCAGTGGAACATGGATTCCAGTGAGGGTATGGCACAAGAA-----GGTGGCTGTGTTTGCTGTCCCCATGATTGCTTCTTACATCCTCAACTAGAATGGAATCTAATTGGTGGGAGAGAGAGGCCACTTCTGAGGAGCAATATGAGGAGGAGG------TACAGCATCTTCCTGCATTTTCTCCCCTCCTTGCCTATCTCCTGATTTCTGGCAAAACTGGCTTAGAAGGTTGACTCTCAAGACTTGAACTCTGTTATCACTGGCTGTACTCTTTGGAACAGGCTCTAGGACATAGTAGCACTTAGTACAGGGAAGTGCAATATTTGCACTGTTAAAGCATTTGAAGAAAGAACCTTGTGCATTCTAATGTCCCAGCTATTGAAATGCCAAATAGCTGCTATCTCTAACAAGATGTACATGATCTTCTTTGCATTAAAAGAA--ATTGTGTCACTTAAAAAA

a score=27819
s chr3           104256520 1889 + 160039680 AACAGTTGCTAAGGAAGCCAACCCGAGTGACACTGTTGAGGATGG--AGCCCATCCTGCATAGACTTCTCTTCATTCCTGGTACT-------------------TAGAATGTCCT------CAGTCACTTTCTGTACCC---------TTTGTTTATCTCTACT-------GATGTGTGCCATTCTAATGTGCACAGAGTGCGAGGTTCACACTTTGCCTTGATCGCGTAGTGCCAAGGGCACTGCATCATTAATACACCTTGGCCAGTTGTTAGCCAGCTCACCAAGTTCCGTTTCTTTTGGCTAGACATGGGTTCT---AAATGACCTGATTCTACACCAAATATCAATTACCTCCTGGTGTCTGCTATCCACTGGCCTGCTTTTCCAGGGGATATGTTTTTTTCTAAAGTCTCATGTTGTCAAGGTGTTTAGTTGCCTCTATTTCTGACCTCATTT----------------------AGCCTGCAGC-GGTCTTAGAGGACTAAAATGTATTATAAGGATGGATACAGTCATAGTTCTAGTGAAGAGAGTCTACAAAGAT-----------------------------------------ATCACCCATAAGGCCATGT--ACCATTTATCTCTATGGAAGAATTTTGTAAACACAGAGAAGTCAGTAGGAATCTTGACACCAGCT-TTTACAACCTTCTTTAGAAACTGAATGCAACTATGGTAACCTTGCCTCTGTCCTGAGACAAACAGGTTTTCCAGTAGC--CGTCTCAGCTTTAATGTTTGTGCTTCACTGTGCAGACTTGTACAAGCCTCTTCTGGGAAAGTATCCCGTGCCCGGGTCTGTGATGTGTTTGTTCAGCTTCCAACAGCTTGCCACCTCCTC-------CCTCACCCTCAGCACCTCAGACTACCTTTGTCTCACTTTGTCTGGAGAACTCTCTGTAGTCTTAGGGGGCTAGGCCTCCTTTAAAAATTCTCTCAGGGGAGACATGCCTCTTCCTTTAACCCCTGCTGACTTGCAATCAGCCTACACAGCTCC-------ATCTCCTTTTCTAGAACATTCTT-------------CCTCCAAACTTCCGCTTGTTATCTCACCAAGCTCAGTATCCCCTG-GCTCAAGAATGAGCCCACCTCTGTCAGTCTGTGAGGTGGAGTTGTGCTTCTGCCTCTCTTGTGCACTACAACCACCAAAGTGCAAACCGTCTGACTACAACATGCCAACATGCCACCTTGGTGCCAGTCTGTCTTTTACCTTTA-TCTATTGTCTA--CCATTTTATGTTTATTTGACCTAAAAATTCAGCTTAAATCTACAGggaagaaagaaaaaagagaagaagagaagaaaaagaagaaaggaaagaaggaaggaagagagggagggaagaaaagaagaaggaaaagaggcaggaTTTTTTTTTTTAAATAATGTCTAAG-TCCTTAGTCTACCATCTATAGGTCCCTATAATATGGCCCAACACTTAACTC-AGGCTTCCCCTTCAA---AACCTTCTTCAGCCAGCTTATACCAGGTGTCCCTTCTG---TGTGGGGTTCTCTGCTTCTGGTAACT-------GTAGCTTCAATTT-------CTCGAACccatgcactgcattaaacccttcatattgtatcagcctaaaagcaatgtcaggtaggaactattatcctgttttcacagaggaaagaaaattgttccatgcattgcctaaatcacttaaataaaaaataacagacctagatgtgaat----ttcactcacctcccaagtccacactccttccTTT-----AAACGTCTTCTCCTCACCATCT----GCTATTTGCATCTCCGAAAAGATCTCAAATACCA---------CTCTCTCCATGCCACTATCTTTTCGCCCCTTTGA---------------------TTCAATCGTCACAATATTATGGATGTGTTGCTT-------------------------------TGTTCTTTCAGTCCCACTCAAGTTCA--TACTACGGGTTTCTTGTTGCCTGTCATATTCCCCTTTGAATATAGTAGGCATTTAGTATGTGAATATTTCA-----TTGGTATCTATACATCtat
s HiC_scaffold_1 114716834 1936 - 233722169 AGCGTTTGTCAAGGAAGTACACCAGAATGAAACCACTGACAATGGGAATGCCTTCTTACTCACTGATGTTTATAGTTCTGGAGCTCAACACAGAACTTAacacataaaatgtattttattcctATTGTTTTCAGtatccagaaaaaaatttttttatccctTCTTTCTTCAGACATGAGTCACTACAC------CAAACCACAGGGCTCCTACTTAGCAACAATTGTGTGGGGTTGCAAGTACTGTATCGCTAG---GTTCTGGGAAGTTGTCAGTAAACTTCCCAAGTGTCTTTTCAGTTGGCATGACATGAGTTCTCACAAATGACCTGATTCTATACCAGATATCTATTACCTCTTGGTATCTATTACCAACTGACCTGTTTTTCTGGGGGCCAC-TTCTTTTCTAACTTCTCACGTTGTTGCAGTGTTTAGTTGCTTCTGTTTCGGA-CTCATTTGCAGAAGTAGAACACCTTAGAAAACCTATGTCAGGTTTTAGAGAACTGAGAGAAATGGAAATGGTGGGTAAAACACTAACTCTTATAAAAGGATTCAACACAAATAGGACTTAGTTGCACTGAGAATCAGCCAACCACCATTGCAAATCAACCACTGACCCTTGTAAACTAATTA-CTTTGGGAAGAAACTGTGTAAGTACCAATAAGCTAGTTAGAATCTTATGACTGAATAGTTGCAGACTCTTCTGTTAACTAAATTCCTCTATGTTGATAGTGCCCCTGCT---------GCAGATCTAACATGAACATCTTCTTGGTGTTTATGTTTGTACTTCATGGTGTACACACGGTCCCCCCT-TTCTAATGAATTAT-CTGTTTACAGGTCTACATACTCTGTGTTCAGGGTC------CTTG-CATCCCCTCTgctgtgttttgctttgtgtacAACAAAC---------ATTACTTTGT---GAGAGAGTCCCTTGATCTGATGTTTCCAGACCAACCTC-GCAATTCTCTT---GGATGGATGGCTCCTTCCCCAAATCCTGTTGACTTGC--TGAGCTATCATATTTGctttccatattcttttttcTAGACCATTCTTTATCCAATTTGTGCTTCCAAATTTCCA-TTACAGCCACATCAAGCTCAGTATTTCAGATGCACAAAAGCAACCCTTTTTTTGTCACTC-------------catgtctctgcctcattt-----------------------------------tagATTTTTCCAACTGGTTACTTTGAAGGCATTCTCTCTTT--CCTTCACTCCACTGTGTACTCCATGTGCTGCTTATTTAATCTAAAAAGTCAATTctaatctattttt----------------------------------------------------------------------------------aaagaaatatttctttacttattgaATAAGGCCCAAACTTCTTAGTCT--CATATCCAGGCCTCT---ATATGGTTCAACTTTGAACTCTAGTGTTATCTTTCAGTGTGCTCCTCTTCAATCAGCTGACACTATGCACTCTTCCTGCCCCACAGGCTCTTCTGCTTTTGATAATTTGTAGTAATAGTTGCAATTTATTAGCACTATGCCCCAAGTGTTGCATTAAGCACTTCATACTGAATTAACTAAAAAATAGTGTAAGATAGAAACTATTATCCCATTTTAACATATGAAGAAA-----TGACAAGGATTTCCTAAATTACATAGTAAGAAAATGGCA-ATCTAGATTTGAACCCCATCCATTCATCTCCAATGCTTGtgttttttccttcatttgaaaTGTCCTCCTCTTTACGCATCAAAATTATTTCCATTCCC-------TCCCAAATAGTGTAGATTTACCTTCCCTCATGCAACTAT-TTTTCATCCCTCTGACGAACAGGAATCatctcttctctttattttcacaGTACTGCAGATATTTTGCTTAGCCTTTGCAAAAGCCAAACAAAGAGTAGGCTACGCTTGTAGTATTACTAGTGCTTATCTACCACATGTTCCTTATTGCTTATTGTGGT--TCTTCAAATATAGTAGGCATTTAGTACATGTATATTGCACTAACTTGGTACCTATTTATCTGT

a score=22181
s chr3           104259063 753 + 160039680 AAAACAAAGCCAAACAAAACAAAAGGCAAGTT-CATGCTCTATACTTGAGTTTTTTTTTTTTTGGGGGGGGGGGTCAACTAAAATAATGAACTGCTTATTTATCTCTGTATATAATCAAAGGATTCCTGTCATCAGTTGCTTTTTTTAA-GTCCCACTTCTTGTGGAATGTGATGTGAAGACAGCTTGTTTCTCACTTGGTAGCATCAGGGAAAAACCAAGCGTGAGGAATGAGAGGCGAAGGTGACagtaagtggcggagttcagatctaaatctaggtgtattggaaacaaacgtcaaggctctttaccagagagtcatactggccTGCAGAGC-------ATTGCCTACCTGTTTTGTTACCTACAATACAGTTGCACTGTTCTGACAATACAGTCTGGCCACTGGGATTAGAATTTGTGTTTTCCCACAACAATTGAGCTACTTACTGGTAATTTAAGATAAAGATTCTTTGTTCT-----ATTTGTTTTGGGCACAGACACAC-ATCCAGTCATTTGTCTAAGGAAACTCTTTTAATGGTACTTTAGGTCCTATTCATGTGAAGACTTAATACCAACAGTTAATGTTATTGTCTTTTTCCTTGTTTCACTTCAAGGGCAGCTTCAAGCTTAGGGGTTACAATACCAAGATCAAGAGCTACTGTGAGCACTC--------TCCTTATAGCTATGTGTAGAAAATTGACTTGTAACCTAAAGGATAACAAATAATACATAACCGCCTTAATCTTCTGCCTATGCCCTGGGTTT
s HiC_scaffold_1 114719074 710 - 233722169 aaaataaaataaaataaataaaaataaaaattgcatgttCTATACTCAAGACATTttctatt-------------caaataaaataatcaattgTTTATTACTCCCT--ATGTAATAAAAGGATCCATGTCAGCAGTTGCTTTTTTTAAAGCCTTGCTTCTTGTGGAATCTGAAATGAAGACAGCTTGTTTCTCACTCAACAACACTGGGGAAAAACCAGGTGTGAGAAATGAAAGGTGAAAGTGAT----AGCGTTAGAATCAGGATTTAAATCTAGGTGTATTTGAGATAAATGGCACATTTCTTTACCAA-----TATACTAAACTGTACACTCAAATCAATGGCGTAGCCATTTTGTTGTCTAAA--ACAGTCATGTTGTTTTGACAATACATTCTGGCCAGTCTGATTAGAATTTGTGTTTTCC--TAACAAATTAGTTGC-----------TTAAGATGGGGAtcctttgtccttttcattttgttttcagtgtagAAAAACTGTCCTACCATTTGTCCAAGGGAATCTCCT-----GTGCTTTAGGTTCTATCCCTCTtgagaataaatataaatagttGATagtattatttgtcttttt-------tcctagTATATATTACAGCCTGGGATTCCCAACCTCA-----AAGCATTGTTATTATCGCTCTTCTATCTTCCCTA-ATCTATTCATATGAAACCAAAGTACAAcctaaaag------cagaatatat---tgcATTCATGTTTTGCTTCTGCACAGCATTT

a score=39986
s chr3           104260213 932 + 160039680 ccttatcttacttgcctgatgcctgttggtcctttagggtaaactcatgctatacatccatctcgacgcctttaagtccctca-tgtcaagagcctcttttaatgtctaaccagaccatgtttca------------gttacattgctttgtaattgcctattaacttgcttgtctccccagctggcttggaaactccctcaggacagggattatagcttgtccgctgttga-----------------ttagaacatagtaggtgtccatcccatttttcgttgaatggatgaaAAAATACACAAAAGGTTTAACTTTTGTGTTATG-----GTCATTTTTAGACAGTGTGCTTTATATCTTTTTAGGACGGAATAAACTCCTTGTGACCTTATTATGTCCTGAGAGATTTGTAAAGCTGAATAATAGAATGTCAGTGGCACCCAGATTATTAAAACATTTGGGCAACAGCCAGGCCTCTCTCTACCACATGCATACTTGCCATCTGGATATTTTACTTGCATGGAGATTATTCTTCTGGGAAATAATATAGGCATCCCTGGTGAGCACACCATCAAAA-GAGATGGATCAGCCTAAATTAATCCAA--------------GAAACTAAATATAACTGAGTGGAGAGGCAATAATGCTTACTGTTATTAAGAGGAAAAGCACACACTGTGTTTTTTTTTCTGAAATCAATTGCAAATTTACATTTGATAACTCTGGTTGTTGTTTAATCAAAAAATGATTATCATCCTTGATTAGGAGTGTTTTGTGGGTTTTTTTTTTTTAAGGAAAAGGAATTGCTAATTAGTTTG---TAACTCTGTTGAAGGTGTTTGCAATTAAATCGAGGAGGTAAAGAAAGCTGCAAATGATCCGAATGCC-GAATGCAGTCACCCAATACGCGAGGTGTTCGTTTTACAAACAGTGTGATGTTCTAGACTTCTCTAAAGATTTCTTTAAAACTTTTC
s HiC_scaffold_1 114720038 945 - 233722169 CCTTACCTTACT-ACCT-ATCCTTATTACTCCTGAGAACTAACCTCATGTTGTACCTCCTTCTTGGCTCCT--AACTCCTCCAATGTCAAGA-CCCCGTTTTATGTCTATTCTGCTCATTTCCCATTAGTAGCACAGGTCATACAGCCTTGCAATTGGCTATTAACTCACCTGTCTCCCCAGTCACCTTGGAAATTCCCAGAGGACAGGAACTGTCTCTTGCCCATTGTTAGATTAGGAGGACTGCTATTTGGAACATAGTGGGTGCCTATTACACATTTT----AATGGATTAGTGAATAAACAGAA---CAAACTGTTCTAAGAAGAGAAAGTCACTCT-AGACAAGAAGCATTATA-CATTTTAGGTCTAAATA--TCCATCATGACCTTATTATTTCCTAACAGATTTGAAAGAGGGAATTACAGA---TTAGTAGCAcccaaattattaaaatatttgagcaACTGCCaga--tttttttatcatttgcATTCTTTGCATGTGAGTATtttacttgtacaggaaatattcTTCTGGGAAATAATATAGACATTTCTAGAGAGCACACCATCAAAAAGTAATGGATCAGCCTAAATTAGTAAAATAGACCTTACAGGAGAAACTAAATATATCTGAATGGCAAAGAAATAATGCTCACTGTTATTAAGAGGAAAAGCACacaccat---tttttttctgtaatcaaTTGCAAATTTGCATTTGATAACTCTGCTTGTTGTTTAATCAAAAA-TGATTATCTTCCTTGATTAGGaacatttt---------------ttaaggaaaaggaaTTGCTAATTAGTTTGCTATCACTCCATTGAAGGTGTTTGCAATTAAACTGAGCAAGTAAAGAAAGCTGCAAATGATCCAAATGCTAAAATGTGGTAACTGAATATTGAAGGAGCTCTCTTT-CCAGCTATGTAAAGTTCTAAACTTCCTTAAAGACTTCTGGAagatttttc

a score=31328
s chr3           104261691 2361 + 160039680 AAAATTCATTATAGGAAAAATCCTGTGAAATCCTGGTTGAGGCTAAAGA--GACTAGTTTTCAACATTTT-ATTATGAATATATTTTTAAA---AAGCACATTGTTATTGTGGATATAGATAAAAATAGATGAAGTCATGATATTGAACCAT--TTTAAAGTTGTTTATTCTCTACTTTAATAAGGTGCTAACTCTGTACAATAGATACTTCTGATTACATCACTTCAGATTTG-TACCTTGGTCTTCTCAAGCTTTGAAGACTT-TATTTCTTTTATT--------CTAGAGACAATACAAAGCAAATAATCAAAGTCAGC-----------------------GTTTGAAGATGTTTGCTTCTTGGGAAAGATCAAATTGCCTACAATtaagatttt-tattttaattattcttcagtgcacagttcagtagggtcgactatgtgcccattgttatacagccatttctagaactttcttgactagcaaaaaaatagaactctatatcaactgaacaagcctctatgccccacccaccctctgctcctggcaaccacctctctgttttcc--atttctgagtttaaccatttgcattctacatgtaaatggaatcat-------gtggtgcctatcattttgtgactgg----------tttcacttagtaggatgtcctcgtgtttcatccatattgtagcatgtaacaggatgctcttcctgtgtgtgactaaacgttttcactctctctcgaggctgagtaagcgtctgctattatcctgcgccacatctctactgtgcattcactcaccattgattgctccggatgcttccatctctaaactgccatggaaaatgctgtcataaacatgagtgtgccaacatctctt---ggtcctgcct------------------cactcaaatatgtgattgaaggatcatatggatatggcaattctccttttaatttgttaagaaatat---gatactgtttacataatggctacatcattttgcattcccaccagcagtccaccaaggttctgattcctccacatgt-tcattgacacttctcttggtatcctatggtgatatcctatggtgatggttcactatgactttgatttgcactccgtccatgtgcagacatgttgagcacttgtccctatgcctgtgactacacacatacatataggcataatttctttggagaaa--tgtctagtcataaagtcctctgtccattcttagttgggtcactttgtctcttgttgttgggttgtccattctttgcacgtcctggattcacctgaatgcatgacttgcaaagatttttctcacattctgtgacttgccttgggttccactgattatccccatgcatgtaccaaagtttccaaatttgctttggtttgtcatctttcatttcattgtccatgcctttgaggtcacatcccaaaacaaaaccagacaaacaaaacacagcatcatgaagctgtcactgtgtg---tcctctgtacttttgtagcctcaagtcttgcagctcaggttgtaagtccattttgagggatgtttggaggtgttttgttttgttttatatggtgtgaggtatgagtccaacttcatttttttttaaacatggatatccaattcccctgctacca----ttgaaaagatta-ctatctcccatagcatagcct---tgaggtc-cttgtcaagatcatatgtaaggttcacttccag------------------------taagttgttt----gaatgcaagtacaatactgttctaattattat-------------------------------------ggcttcctaccatgCCCTACAATCTGAA-ATAGGCATTTTGCTATAACA-TACTTTTAAAAAATATTCAGCACTAGACAACACAAAGGGTTGTGCGACACTCAAATACTGTGA------AATTACTGACTTTTGTATTCCTCACACCACGAATATCACAGC----CACTGAATAGAATTTTGTCTCTATATTTTGTCTAAAACACGCTGTCTATGGGAAGTAACCAGAATAAAGAAAGTCTCTAGAAGAC--TTGAGAGAATGTAAAATATTTAAGCTATAAAAATAATTTTAAGGAAACCACAATAGCAGTCTCTGATTATTCATTTGTTC-AAAATATCCATTACAATGTAATTATAGTATAATCTCAAAAATAAAAGAAAAATAGGACCACCGCCTTCTACTGTGCACCAGATTTTCTGCCTTCCTCCTTCCATGCCTTCTTTTCTTATCTGTTGCAGCCTACCCTCACATTATGTAGAGCACCAATCCTCCTGGGGTAAGAGAGGAAACTAACTCAGACTTCACTATATGTGCAATGCTTATGGAGGAGTCTTGTTGCC------------------------------------------------AAAGAAAGAACTAATGTAATTGCTCTGAAGATTCAACACCCTTCATAT-AAAATAGCTGGTAGGCTTT---------------GATAAT-----GAAAAGACAAGTGATAGATTA--AACAAAGTATTTAAAGAACTC
s HiC_scaffold_1 114720973 2298 - 233722169 AagatttttctcataaaaaatcC-ATAAATTCTTTGTTGAGACTACAGATTGATTA---TCCAACATTTTTATTATGCCTGTacgtaaaaataaaagcaaattgctATTGTGTATGTAGATACAATTAGATTAAG--ATGGTCTAATATTATGACTTTAAGTTGTTTATTCTCTACCTTAATAAGGCACTAACTATGCATAATAGCTACCTCTGATTAGACCACATCAGACCTGATACATTGATC-TCCCAAGTTTTTAGGACTTGTATTTCTGTTATTCATTTTACCTGGAAACAATTCCAAGGGCACAGTCAGTATTGACATATTAGTTTCTTCAATAATAATATTTGAAGATGTTCACTTCCTGG--AAAATCCAATCTCCTAAGATTAATTTTTtccatcttaactattttttagtACATAGTTTGGTA--ACTAACTATGTGCACATAGTACAAGAG--ATCTCTACAatattttcatcttgc--aaaactaaaACTACATATTCCCAGAACAA----CCACTTCCCATCCCATTACAGCAACTGGCAGTCACA-cactactttccaaaattttgacttt-----tttacatatcttatgaaaa--aaattacagtgttaATGATATAT-TCTTTTTATGAGAAAGTACATACTCTCTCACTTAGC---ATGTCCTCATGCTTTATCCACGTTGTAGAATGTGacacaat----ttcct------------------------tctttttaaggtAGATAAGATTCCactatatgtatataacacagtttt-ttatatgttcatcCATCAGTGGACATTAAGGTTGTTTCCACTTCTTGGCTATTGTAAAAAATGCTACAATAAATATGAATGTGCAAATATCTCTTTGGGattctgcttttaattcttttgggtatATACCCAGACATGAGATAGTtggatc------atatggtaattctatttttaatttttggaggaaagtttatattttttttccataatggttgtactattTTATATTCCCACAGATAGTGTACAACAGTTCCAGTTTCTCTATATCTCTCATCAAAATgtctgcaaacattttctcctg---ttCTGTAG-------------------------GCATCCTttttacttataaa------------------ttatttCCATGGGTTCACAGAAGTTCCTAA----AATTGCTGCAGTGTAATTTGTctaattttacatttacttatttatt----------------------ttggtatcgg-----------------------ggattaaact-----catgac--------------ctcgcact---tgtcaggcaggcgcttactctgctaagct--------------aaatccccagaccc-----------ttaattttacttttattatttgtacTTTTGAGATCATATCCAAAAAAGTAATT------GTCAGATTCATCATCATGAAGATTCTTCCTTATGTTTTTCTCTAGTGTTGTGTAACTCTAAGGCTTGTAGTTTAACTCTTTAGTTCATTCTGAG-----------------TTGTTTT-TTATATACAAGATAGGGAGGGAGTCCAACCTCA----TTTTTGCATGTGGGTATCTATATTTTCCAGCATCATCTGTTGAAGAAACTGTCCACTCCCCATTGTTTACCCTTGCTGAAGTCACTTGGCTA---TATATATGAAGTTGATCTCTGAGTTTTCCATGTTATTTCATTGGTTTATATTGTTTGTCAGTATGCAGCTACAATACTGTTTGGACTACTCTAGTGTTTGGTGATatgttttgaaatcaggaaatatAAGGCTTctacctttgtttttatttctgaagatAGT--TCTCACTGcaatagtgctttttaaaaatgtgcaatgTTAAGCTATCATAAGGGTAATATGGTGATCAAATATTGAGAAGCAAGAATTATT--CTCCTTTATTTACCAGATCATATATATTACAGAGGTGCAGCATGTAGAATTCTATCTCCAAACTTGATCAGAAACACTATGTCCATGTGAAGTAACTAGAATGAGGAACATCTAGAAGAAACATTTgagaaaatatacaatatttaatctataaaa--------gagaaaa--atgaaaactaattttaataatttactcattcaaaaatattcattaaatatctACTAT-GTAGAAT-TCAA-------------------------CCTTCCTGTGTATGTCTAGTTCTTTGCCTGCCT-----TACACATT-------------------CCTACTACCAAACTGAGGGAACCATTAAT-CTACtgtgatcagaaaaaaaattaaatca----tcctTAAATCCAGACTGTTTGTGAATGAATCTTattaacagtttaaaaaaattcccaCACTAGGGTTTTTGTCTCTGTTTAATCTGAAAAGTAAAgataaatgtaattatatt-----ttcagtaCAACCCATATCAGAATCCCTGGTGGACTTCAAAAGACACCAGTAGGAtaataaatgggaaaaacaaGCAATAGACTAGGAGCAATATATTTCCCAAACTC

a score=45345
s chr3           104266547 3447 + 160039680 cacccacacatataaaatTGGAGAaaaattaaaac---agagaataacaaatgttggtaagaatacagagaaatcaaaccattcataaatggctggtgggaatgtaaaatggtgtaaccactttgaaaaatagtttggcagttgctcaa---------aatgttaaatgtggaa-taccatatgacccagaaagtacactcctaagtat-catccaag------gagaaatgactatcaatgtcct-------cacaaagacttgtaagtagaggtgccttcctatggcaagtagattaaagaaacagga---caccagaatacaccaatgaaaagaaattaaaatatggtacata--------------------atttggcaatgacaaccc--------ttacaatgttactaaatctcaaatatattgtgttcagtcaaagaagccagacacaaagggacactacattgcatg----------tccagagtcact---------gaactagaaggcaggttggtcattgactagagctg----ggggtgatgagg-----------ggaggtgactgtgaagggacataaatttttgg------gtggta----------------------------gaagtattc---taaaatcacacactgtggtgatggatgtgcaagtttgttagtata------------catatgg------ctgaattttaTCCATGTATACTA----TGCATCACTAATA-TTACTAAGAATAATTTTTAAAGATTTAGTTTT----------ATTATTTGTGTGTGTCTATCTGTCTGTCTATAGAAA------AGTGGGTGCCCACAGTAGTCAGAACTG-------------ACCAGTGACAGCT--TGTGTTTCAAGAagctcaagtggaagatttttatatttactgccattcagtttct-cctacaggcttcatctcctcat-ccaagtctaagatggcttatcatcttggtatcattggcttatttcaccagctttgtactctctagagcatttatttaacatgccctgttcatctctatccaagtcactgagacagggctgagccatggtgaggagccACAAAGATTCCTCATCAAGAACATTCTTTGTATTTCTGTTTTTAATCAACTTGTT-ACTTA--CCATGTACTGGGCACAA------TGTTCAATGCAAAGAGTATGAACACAGACATATATGTCTATGGACACGGGGACACACACACACTTTGGTCTCTTCCTTTAAGAAG-Tcatatttctatagtttattaccaaacatctcataaaagactgtaagttgcttcactgaaagccagaaac--TGACCTGTCA---TGTCAAAGACTCAATAGAAGCTACTGTAG----AGCAGAGGT-AAGTCTAT------CTCAGACACAAATTGACTAATTTCTCTTTATTGGCACCACTAT-ACAAAATTCCTATGAATTTTC-----TTCACAACTGTGTAACCTGGCTGGCCCTATACAGTTTTTCAAATTCTAACCAGTCGTTAAACAATTTTTATGTTAAACTTAAAGATTCAGTAAAGCTTCCGTTTG-----AATGTTTATGATTCATTAAGCCCATGGTTTTCATTACAGTAATATTTAGAGAACTAATTATCTCTGAGTAACC--AGAGTACGGTGCAATTTAAATGTCATTCCCAGAACAGGTTAGGAGCAAATTTACTTATTAAATTATGAATGTTTTACTTTATACTGGCCACTGGATAATTAAAAAAATGAACATGACACTT-AATTCCAAATTCACTTAAAAAGATGCAATCGCAGTGGCTCTCCCCTAATTCACGGCAAGCTGACTGAGTTCCTTTTCTTAAATATTGAGAGGCTTCCCTTCAGCTTTGACCACGTTAGAGTCATGACTTCCAAACTTAGTTTTCAAGCAATTGATTTCTGATAATTAAAAAAAAAAAACAAAAACCCTAGAAGGTGGAGAACATTTTAGAATAGAAGTTAAAgagactggagagcagctgagcatgcttgccctgcatggacgaagccttgggttccagcactacaaaaaCAATCTGGAAAGAATAGTCATTAGGAGTTTTATTTCTCAAGAAAATCCATTTTCTAAGTAAGACAATGAGAATACACTAGtaggttgaaccatatagaactattttggtaaattttaaaaggttgaaaattggcaatttcataagctcaagctaaTGGATATATTAGATATGACAGTTCTTTAATAGTACAAATTAATTTTGAAAAATTATAAGTAGGATTTTAAAAATTACATAGGATTTAGAAAAAGggagcaggagagatgccttcgtggttaagaacactgactgctctaccagaagacctgggttcaattctcagcacctacatggtggctcacaaccatccatccaatttttgggagcaccaattctggtgtctgtggcactgcactcatgtggcacatgtaaatacctagaggccaaacacccacacacataaaataaaaTCTAGAAAAAAAGAAAAATCTATCCCTACCATACAAATGTAAATTCCATAGACATTTCTT-TTTCCCTTCCCTTGCTTC-TCTTGTACATA-TTTTACCAGATTGTAGTCATGGCATAAATAAATTGACATCTATAAAAATTAAGAATTTTCATCCTggggctggagagatggttcagtggttaagagcactgactgctctcccagaggtcctgagttcaattcccagcaaccacatgatgactcacaaccatctgtaatgggatctggtgtccttttctggtgtatctgaagagagtgacagtgtactcatataaatacaataaatgaatctttttttaaaaaaaaaaGTATTTTCATCATTTACACTTTCAATTTGTGACATATTTGTATCTGTCCTTTCAAACAATTTTATATTTCACCAACTTTATCTACTATATTTTATGCATTCC------------CATACTTGGATTGTTTCTAACtttttaaaattttattttattgtattattttatatGTGTGATTGTTTTGCCTTCATGTATATGTATGTgctgtgtggatggtgggggttgaacctgggtcctctggaagagcatccagtacccttaaccactgagccatcaatccaacTGCACTTAGGGCTTTTTCATATTACAACTGGTATTATGATGAACATGATTGGAATTGCTAAGAAAAATATGCCCAGTGTTGATGTAATGCCATTTTAAAAAACCCATGTCTCTTTACAAATTTTCCACCATTCGTATCTTTTAAATCAAGTAAATTATGAGGAATATTCTTGGCTATCAAGAAACAGCACTTCTATACGTTTTCGATGTAATTTGCCATTTCTGCTATAAACTGATTTCCTTTACAGTCATTAATTCTTAATGACAACATAATAATGTTCAATCTCACATT---CTCCCAAATTTTCCACTGAACTTGTAATTAAAACGTCAGGATTCATTCCTGTCCCCAAAAAAACATTTTTTTCTCTTCTGATTAA--AAACTCTACTTTATAGGTCTTAATTCTTATATCTCACTGCAGCAGCAAAAGGAATCTGTAAGAAAAGGAACGAACTACATGTTTACAACTTAAAAT--TTGTTATTAGCTTGGCAGAGACAACAGGGTCAGAT
s HiC_scaffold_1 114730081 2935 - 233722169 cacttaaaaaaataaaaacaaaaaactttgaaAACCTTACATGATAACAAGAGTTGGTGAAAATTTGGAGAAATTGGAATCTTTGTATATTAGTGTTGGGAATGGAAagtgg--------------aaaacagtgtggaagCTCCTAAACAGTGTGTTAgttctaaaaatagaactaccatgtgATTTAGCAATCTCACCGctgggtatatatccaaaagaCTTGAAAGCAGAATTTCAAAGGCATATTTACACACCAGTGTTCATTTGCAAAG-TCTTTCACAATAGCCAAGAGGTAGAAGCAATCTGAATGTTCATGgataaatgaatgcataaaga---aaatatagtatatacatataatgGAATCTTATTCATTTCTGAAGGAAGTCCTGTCACATACTACAACACAGATGAAGCTTGAGGACATCATGCTCAGT----GAAACGAAATGTTATTTGTGATTCCATTATATGAGGTATGCAACCAAGAGAAACTCttagaaacaaagtaaaatactGGTTGCTCAG-GATTAGGGCCATTGTAGGATAGTGAAGAGTTGTTCAATGGATatagttttgcaaaatgaaaaatttataaagatcTGTTGCACAACAATGTGAATATAGTCAACAGAATTGAAATATACACTTAAAATGTTAGgatggggctgaggatgt---agcttagtagtatAGTGCTTATCTGGCATATAGGAAGCCCTAAATTTTAGTCCTAAATTTTactactgcaaaaagaaaaatctctgtgCATATGTTTCAACCAC--AGTTTTTATAAAAAGCACTGTTGGCTCAAGTTAAGCT--CAGTTTATACAAATTCTCCAGTTAATGCCAGTTGCCATAAGAGCAGTCTGCCATCCAGTACCtgtga-aactgatttttttcaaaatactgaaataagGAATTTTT-CAGTTATTGCTGTAAAATTTCAACCTATAAGCTTCAACTCATCATTCCAAGTCTAAGCTAGCTTAGCATCTTGATGTTATTGACTAGTGTCACCAACTTTACACTACTTGAAATGTTTGTTTGATAT-----------CTTCACCCAAATTACAGAGAATAAGCTGAGTCAAAGTTAAGGTCTCTTAAAAGCTCTC--CAGGCATTTTATTTGTACTTGTGTTTTTTATACACCTGTCCAATCAACCCAAATGTTATGTATCAACCTTTTGTTTACCTCCAggcacctacacacacacacacacacacacacacacacacacacacacaca-----------tccttaaAGTAGACCATATTTCTATAGTCTA---ACAAGTTTATCACAATAGACTAAAA--TGCCTCACTGACAGCCAGAAACACTGATCCATAAATGCTTACAAAAATCCATAAATGCTTCCACAGCAAAAGCGGAAGTGAAGTCTATTTTCACCTCAAACCCAGGTGGTTTGACTTGTTGTTCCCAGGACTGCTGTTACAAAATACCTATGAATACACCTAAATTCATATTTTCATAGCCTGGCTGGCCTTCGATGATTTTGTAAACTCTT-CCAATCATTAAGCAATTTTTGTGCTGAACTTAAATATTCAGTGAGGATTCTGTTTGGTTTGAATTTGTATGATTTATTAAACCTGTGGTTTTCATTACAGTAATATTTAGAGGACTAATTATCTCTGAGTAATCATAGAgtacaaaacaatttaaatgtcatTCCTAGCACAGGTTAGAAGCAAATTTACTCATTAAATTATGAGTGTTTTTCTTTATACTGGCctttaaataatt-gcaaaatgAACATGGCACTTAAATTGCAGACATA---AAACAGACATAAG-GTAGTAGTTCTATATTGACTTAGATCAGTTGGAATTAAGctcatttcttaaaaattga-aaacttccCTTGGGTCTTGATTATTTTGGAGTCTCAGCTTTCAACTGTGGTTTTCAAGTcctt-atttctaataatt------------------ttcagAAAGTTAGACTCCATTTTGAAGTGTAAG----------------------------------------------------------------------AAACATTTTG---AGGCTAGGACTTACCaacttttattctaaaaatggatttatttgtaaattagacaatg-taatata-tattaaGTTGAACCACATTTTGCAATTTGTGTagg-taaaaatgattaaaaattagcAACTTTATGATTTCAAATTAGTGAATATGTGCAACAGGATCGatctttaaaagtagaaattaattttttaaaattac-----gaAGTTTAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCATT-------------------------------------------------TGGAATAAACTTT-----------AAAACCCATAATCTCACCACAAATATAAACTCCATCATCATTCTttacatctctttcattatttctttttgtgcaTATTTTTACAAGGTTATAGTCATAGCATACATAAAC---------------------ATttacat-----------------------------------------------------------------------------------------------------------------------------------------------------------------------atgaaaaaatttt---------------atatttgcatcACTCACAC-TTcagtttg-----tatttgtatttataattttaagtaattGTCTAATCCACCAATTGAATGTACTGTAGTttgcttatttaatttacatattgtACAGTTAGATTGCTTCCAGTTTTTTGA---------------TATTAT----------------------------------------------TAAATGATG------------------TTTTGATGAGCA--------------------------------------------------------------------------------TGTTTTGAATTGCTA--AAAAATCTGGCTTCTATTTATGTAATAACA--TTAAGATATCTATATCCCTGTAT---TTTTCCACTGTttggatttttt-aattaagtaaatTATGATGAATCCTC-AGTACATTAAGTGATAGCAGTTCCATAAGTTTTCTCTGTAATTTACCACCATCACTCAAAACTgatttcttttatacattttaattcataatgacaacataataattttcaaatttgcaTTGCACTATCAAATTTTCCACTGAACTTATAATTAAAATGTCAGAATCCATTCTTGTTCTTAAAAACG-ATTTTTCCTTCTGATGATTAattcaaaactattttataaatcTTAATTCACATATCT-ATATCAGCAGTAGAACAAATTctcaagggaaaaaataaagcaaaagtttaaaattagAAACAGTTCTTATAAGCTTGACATGGCCAATAGGGCTAAAT

a score=47070
s chr3           104271480 1566 + 160039680 TAGTTCATTCATAAGTCAGACCCATTTGACATGTTCATCCTAGTTTAGACGTTACATTCACATTTATGCCAATGTCGAACACTACTAAACACAACGGAAGCTTCAGGTGCA-GCCAGTGCCGCCTGCT--ATACTTCCATGTCTCTCT---------ATAGTCAGCAAACTAACTGGAGTTCTAGTTTTCCTCATGCATTTGAGAGACTGTTT----------TATTTCCAAAGGACTGTAACAACCAACATTAGGAAGTGTGTAATCTACAGGCCTGTTTAT----TTTAATCAAGAACAGATAGGTATAGGCATATATGTGAGACCATCCCTCACTCACCC-CTCTGATCATTCTTAAGGCTGATAGCTGGCATGCTTGAATGGTTGGCAATACTGACATAGTTCACAAGGATG-GCTAGCCAGAATTAGAATGAACTACTCTCACTGAGAATGGGCCGATTGACTT----TCTGCCCTCTGTCCCACATTACACGAGGAGAGTACATTGAATTTGACGTGCACTTGAGTGCCCGCCTCTGTGTAGGGCAAA-TGTGTACCAAGAAAAGCTGTGCCCTTGATTTTTACATCTTTTCCTAGTTCAGTGACGGGCTAACTCACCCCTCCCCACAAAACACATCCTGGGGCTGAAAATGTTTTTGTTAGCCGTTATGCAACCTTATGAAAAAGCATGGTTTTCTCCAAATTGGATATACTATAAATTGAAGACATTAGTCATAGCTGGTGCTTCCCCCCACCCCATCCACTTGAGACACATGCTTTAATACTTTTTATTTTCAGATCAGATTTTAAGTGGCGGGTTGAAATATTGGAGAAGAAATGCCACATGCATTAAAAACAAAACAGGTTGGACAGCTAATGTTTTTAAAGGCAAACTGCATCAGAGAAAGGAGAAATGGCAGTATAATTTTCTCACATTCCACCCCCCCAGGTGTACAAGTATAATTTAACAAAAC-CAATATGATGCAGCCTTTATTCATGCTCAGTGCCTGTAATTATGGGACACTTGTCACTGGTGTCAAACGGCAATCATCTTAGTGGGGGACTCAGAGGAGAAGGGCGGCTCATTT-TTGCCCCC-----TAAGAAGCTTACAGCACCTTTGGGGAGATAAGACAAGCATGAAAAAGTTTAATAACAGCATGGCCTATTAAATCCATGACACAAGACAATAGTGCTTCAGGAATACAAGACAAAATGGCTTTGGCAGAGCCACAGAGAAGCAGCAAGCCTTCGGCTGGGTCTTTAAGGATGAGTAAATCTTTGCTATGGGGGAGGGGAGTGTGGGACAAGGAGGATACTCTAGCCTGAGGAGAACATTTAAGAA--GGCAGGATTGTGTGACTTGTGTCACAGAATGGCAACAAGATAGCTTGGCAAAAAGTTGAGGGTCTGTGGAATAGAAAATTAGATTGGA-------TTTGGGGACGAGGAGGGACTATCCCATACTCTCTCAGTGCC------------GGTCCTT----TTATTGAATATTTCCAACAAGTCCAtaatcctattccctaggtttatgggtaag--gagaaagactcagagagatggtgtgatttgaacaaagGTGGTAAAGTTAGCCATTCATTGCACC
s HiC_scaffold_1 114733327 1556 - 233722169 TAGACTATTGATAAGTTA---CTGTTTATCTTGG----CCTTGTTCCATTTTTGCACTCTCaattatgagagaggaaaagACTGCTGAGCA--GTGTAAACTACAAGTACCCATCAGTGTAACCTGCTTGCCACTTTTTGGTCTTTCTTACATGCCTGTAGTCAACCAGTTAACTGGCGTTCTGGGATTTGTGATTCATTTGAAACACTATTCACTATTATTCTACCTGCAAACGGCTATAACAACAAATATTAGGAAGTGGGTAATATACATTCTTGCTTGTATTATTTAATCTAGAACAGGTAGAAGTAG--AAATATCTGACATAATCTCTCGCTCATTCTCTTTAATCATTCTTGACAGTGATG----------CTCAGTAATTGCCAACATCTA-ACAGTCCACAAGCACACAGTACTGAGAATCAGCATAAACCATCTTT--TGACACTGGACCAATCTACTTGGCCCATGCTCATTATC-----TTACATGAGAAGAGAATATTCAGCTTGTTATGCATTTCGGTGCCT-TCTCTATGTAGGATAAAATGTGTATCAAGGAAAGTTGTgcctttgtttttcacattttcccCTAGTATAGCAAAGGGCTAAAT------TCTTCCAAAAATACATCCCAGGGCTGAAAATGTTTTTGTTAGCAGTTATGCAACTTTACGAAAAAGtatgtttttcttcaaattgaATATACTATAAATTGAAGACATTAGTCATAGCTGGTGTTCTTTCCCATCCTAT----TTGAAGCACATACTTTAATACTT----TTTCCAGATAAGATCTTAAGGGGTGTATTAAAATATTGGAGAAGAAATA--ATATGTATC--GAACAAAACAGGTCAgacagataatatttttaaaaa-gatctgcaTCTAAAGGAGAGGAAATGGCAGCGTTGTTTCCTCACA-TCTGAACCCCCAGGCACAGAGGTATAATTTAACAGAATGCAATACAATGCAGTACCCATTCATGCATGCAGCATACATTTTTTGAACATTTG-CATGGGTCTCAGACCACAACCATGTTTGTGGgagatacaaaagaaatgaagaccTCTTTCATTGCCCCCACCCACCCAAAGCTGATAGTATCTTTGAGGAGGTAAcacaagaatgaaaaa-tttattaATAGTGTGGGACACTAAATCTAGGGTGCAATATAACAGTGTTTGAAGAACCCATGAGAGAGTAGTTTTGG-AGGGCTGCAGAG-AGCATCGAGGCTTAGGCTGGATCTCCAAAGACGCACAGGGGTTAGCTA---GCTAGGGAAGCATTGG----GGAGGACACCCTAGC---ATAACAACACTCGAGAAACGCCAGGGTTGTGTAAC-TGTGCCCAGGGATGGTAAGGAAATAGCCTG---AGTGAGTAAAGATCTATAACATGGAAATGAAGATTGGAAATAAAGTAGGGAGACACAGGGAAGTTAGTGGATTTTTTGTTGCTACCCACTATTTTCCAGGCCCCTTAGCTCATCAAATATTGTCAACAGCT--------TGATTTTTCAGGTTTCCAGATGAGAAAAGGGAGACCTGGACACATCATGTGATTTG-ACCAATGTGTTAAGTCTAGTGGTTGACAGCACC

a score=35605
s chr3           104274720 1109 + 160039680 GATAAATATTTGTTTAGAGAGAAGACACCATAGAACTAGCAACCAGAGGATGTATTCTCTGATCCCAGTTAGGCATTGCCTCATTTTATGAACATAATCAAATGGAATGATGgctgtgtgcccctgaacatgttagtttacctctctgaggct-gtgttcttatctgttaacacgaggC---------TCATGGG-CTTACATGATAGATGAT--AGACAGTGTGATTAAATAT--CCTGCTACAATAAGCCTTTGTTATTATTGTTCAGGAGGAA---------TTATCTTAATTAATTCATA------------ATGCAGTTTTTCAAATCAAGGCTGCAGTTAGTGAATGGGTTTAGGGAGATAAATGCTTCTAAGGCAGG----------------ATCTTGAGTAATGGGAA------CACACTGGCTTGAAGTGTTCCCAGTGGACCCCCTTCCCCCCACACAATGCCTGTGTAGTAATAG-------------AACTGAAGGGAGAGA-ATCCAGGCTTG-CAACTTGTGCTATGAGTGCCT-GATCTCT---AGCCTGAGATCTTAAACAAACAAGAAGTGAGAACCCCAGTAAAACATCC--ACTTTCCTTGAATCCCACTGTCAGTGAAGGTGGAGAAGTGCCCTAAGAGTTCAAAGTGGTTGGGATGGGTCTGCTATGTAATTTTATACAACATTTT------ATTTTTATAGAAAACAGTCCAAGTTTAATCTTGTCCTGAAAAATCTTCAGGTCTTTTATGGATTTATACTACCTAAACTTTATTTCAATAAATATCCCAGAGAAGGAGGAATAATGAA-CTTTTTGTCTGATAATCATATTTACTGGCTTCATCTAGTC-TTATTTGCTGAAGGTTGGTATTTTGAAACCAAGAGACAACATAGCTTCATT--TTTTCCTAA-TAAAACAAAAAGCTGACTCTCTACAGTAGGC-GACAGGAGGAGCCTACT---CGTCTCCAGTGCTCCCCCTCGGCTC----TGTCTTGTACATTATTACAGCTGCAACACTCTG--CATAAAAATGGCATCAGCTGTGGTTAAATATTCATGGCCACTTGCTAGTGGATGCACATTTTTATTATTTTTAGCAAATAACAGATTATCTAATGATTCATTTAATCCAGTTTATGAACTTCTAGTGTCTGATGT--TTGTCTGTCATCAACAGATTT
s HiC_scaffold_1 114735132 1145 - 233722169 GGTAAATATGTGTTTAGATGGAAAA-----------------------GAGGTGAGTTCTAGTCCTGGTTTAGCACCAATTGGTTTTACAAGCATGATCAAATGGGATCATAACTATGTGACA-TGAGAAGCTCACTCCATCTTTCTGAGGCTCATTTGCCTTACTGCAAACATGAAGCAAAGTCTTATTATGGGGCCTACATGG-AGAGGATGAATACATTGTCATTAAATACTGCCTGGCTCAATAAAA---TGTCATTATTGTTAAGGAGAAAGTCCAtgcattgttttaattaattCACAGAAGCTAATGGGATGACAGTTTCCATTTTAAGGTTACA-CTGGCATGTGGATTTTGGCAGATAAACCCActgaagaaaagggaagagaattaAAGTACCTTGTGTAGTAGGAATATGAACACACAGTCCTGAAGGTTTATCA---------------------CAGGGCTTGTAAGGTAACTGTTGGGCGAGTGTGCACTGAAAGGAGAGGTAACCAGGCCTGGTGACTTGTCCATTGAGTGTCTCAAGCTCTTGCAGCCTGAGATCTTAAACAAA-GATAAGTAAGGACTGCACTAACATGTCTTAACTGCCGTAGAATCTCACTGTCTGTGA---TAGAAAAATCACATTGAAGTTCAAAGTGCTTGAG-------TTTTATGtaacttcacataacatttttagtttaattttatagaACAGAGCCCTAGTTTAATCATGTTCTGAAAAACTCTCAGTTCTCT-GTGGAATTATACTACCTAAACTTTATGTCAATAAATATTCCAGCGGAGGATGAAAAATGGATCTTTTTGCCTGATGATCATATTTGTAGGCATCGTCTGGTCTTTATTTGCTTGAGATTGGTATTTTGAAACCATGAGACAATATaggttcatttctttttctaattaagaaaaatagcTGACTCCTTACAGTAAAAGGACAATAAGCATCTCCTTTATGTCCACAGTGCTTTCCCACTGTTCCTTTTTTGTTCTACATTAAAATAGCTGCAATACTCTgcacataaaaaagaaatcttctgTGGTTAAATATTCATGGCCACTTGCTATTCAGTGTATGCTTTTATTATTCTTAGCAAATAA---ACTATCTAACG-CTCATTTACCCCGCTTTATGAACTTCCAGGACCTAATTTTCTTGTCTATCACTGACAGATTT

a score=19634
s chr3           104278162 809 + 160039680 ctagcatcctgagatgtttactccaaatatgga-tggatttcttgggtcc-ctgctgcaggctctggggtagaatccagtctc-------tgaatacagct----tgcccacatctgcttgcatagtcagattcttaCAAGTTCTCCCTAATGACAGGGCTTTGCCCGCAATCACCACACTCCAGCTTTTCTTTCTGCCTGCTTCAGGTAAAG--ATCATCAGTCACATTAAACATCACAGATCATGTACAACATACATAGTTTC--ACTAAAGGGCCCTTAATGGACAATTGACTCTGAGGgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgAAGAGCAGGAGACAAGAGTAAGCCAGGCTTTCAAC-------GTGTT------------TTTGTTTCTATGAATACACCAGGTACC-TTCACGTTTTTCTTGCCTGTCCAAACCGCAGTCTCGTCTCAGCTTCCATGAGATGACT------CCTCAAGAAGAAAAGAGGTCACGGGGATGGCTATCTCCAGACTATAATGTTTTCAGCCACCAACTCTTAATGAATACCTAGGCATCCTTTCT------------------------------------------------------ACCTTGATTCGTCTTGACAGAAAAGGAACTATGGATGGCAGTTGTTGTAATGGCTTTTGACAAGTTTTAAAGTCCCAACTGAATTAGTAATGCTATCCCTT------TCAGGTTAGAAAA-TATCCATCATTTATATTATATTAATTTGATCAGTAACATGGATTAAAAGTTCAAAGCCTACATCATGAAGTCAAGTTAGTAAACATCAGTGTCATTAGTGAGAGCTAGTGACTAACACCTTA-AAATTGTAAAAACACATGATGAACTCTTTCAGTC
s HiC_scaffold_1 114741015 854 - 233722169 CTGGCTTCCTAGGCTGTTTATTATAGATATGGGGTTGATTTCCTGGACAGGTTGCTATAGGATATGGGGTGGAGTTCTGTTTCATTGGTCTGGACATGATTCTTTTGTACAGGGCTATTTG-GTGATCTGGATACAACAAATTCT-------------GCATTTCTCATGATGCCTAAACAACAGATTTTCTTCC----------AGGTTAAGCAATCATTTTCCACACTAAATGTACCAAAAAATGTATTCTTTACATAGTTTTCTATTAAAGAACCCTTGTTAGCCAATTCATTTTGAGAGT-------------------------TG-ATAtgttaaaagtagaaaacaat-ttAAGCCAAGCTTGTAACAGTTATTGTGTTGTTATTAATTGTTCTGCTTCAGAGAAAACAATATGTACCCTTcactttttctttgtgtatctaaatttCAGACTTATCTAAACTTTCATGGAATAATTGCTGACCTTCAAGAAGGGAAGAGAGCCTAGCCAAGACTATGTTTCGGAAATAATGCCTTTAGCCACAAATTCTTA-CAAATAACTTGGCATCATTTCCCTCTGCTGGGACCTTGTAGACTATGAATGTTGTATCCGACAGAGTTTTTGTTCCACCATGATTCCACTTAACAGACAAGGATTTCTGGTTGACAGTTGTTATAACAACATCTGACA-GATTTAAAGTCCTAACTGAATTAATAATCATTCCTCTTCTCCACTCAGGTTAAAAAAATACCTATCACTGATATTA-----ATTACATCAGTAACATGAATTAAAAGTTCAAAGCCTGCATCATGAAATAAAGTTAGTAGAAATCATGGTCATTATTGAGA--CACTGAATAACACTTAATACAATACTAAAATGCTTAACGACACATCTCAGTC

a score=20812
s chr3           104286590 1714 + 160039680 GAGTGGTTAGGGGCAGGTGTAATCTGATGGTCAGGCAGA-GTAAAGTAAAAACTTAGGG-------------CCTAAGGGACTAATGCAAAATGGCATGGGTGTGAATATGACATGTCCTTGCATATTGGAAGATTTGGGAGGAATGCAGAGCTTGCCTGTATGCACAGAAGGGTTGTTACATGGAAGACTGAGTGCAGTTTCAAAAGCTGCAAAGGACA--GTCACATTCAtcatgtatccaacaaacaca-gagtgcctgatatacacaagccactgctctaggcataggggattacaatagtgaacaaggcacataaattccttttgctgtaaaactggcacgttt---gggagcaaatggtaaaaagaattacacacatacatttggaac-----gatagtactggatgatatggaataaagtaaat-----cagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatggag------------tgtgggagtgtgacagataagcagaaacctgtatgaggagaaggagca---------gatgcctggggg------------gcagaactaaaatccagtgcaagggccctaacgtgg----gcctttgtt-tgtttggaaagcactgagaagtcttcatggctaaagagtagcaggaattgaggtcagagaaactaaacagggTTTGGTGGCACAGAGGCCAAGGTAAGCCACTTGGTTTATTCTGAACGTTAGG----------CAAAGATAC---GATTGGAGAATGATACGATTGGGTTTATACTTTATAAGAAAGACTCAAGAGGTGAGGGTGGGCTGCCACATGGAAC-CATTTGGTAGAAAGGGCAAGGCAGAACCAGAGAGATGCTTC----GGCCATGGTCCACGCTGAAAATGGTGGTGGTAGCAAGATAAGAATTTCAAGAAATCACTGTGTAGA--CATACAAGAAAAGCT----------------------------GTCCAGATACAGGACGACCTGACTCCTTCTGAAGGGAAAGAGTTTGGTCCAAACTCT-----AGAAcagtggttctcaaattgtggt-----------------------tcgtgacccctcaaatggga---------------------ttgaaggaccctttcacaagggt--------------------caccgaagatcatgggg-------------aaacacag------------tttataacagtagcaaact-------------------------------tacagttataaag----------tagcaatgaa---gataattttatg------------------attggagtcaccacaacatgaagaactgtattaaagagcctcagcatg------------------agaaaggttgagaatcgctgCTCTAGAACAT------------GGGCCAA----ACTggccat----------------------acctg-----gcatgctaggtttaatcagtaaagtttt--------------------------actga-aacacaaccacactttcttgtggcttctttggca---------ctaccactttgagagagttgaatcattaaaacaaagacca-tacatacagcctgcaaacaataaaatatttacttttgggctcactacaaaacagctttgttaaATGCTGACCTAGAATTCTCAG------------GTTCTTGCCCTGTCCCATCTGGGTTTCTCCTGAAGAGGCA------------GCAGA-AACTGTAGAAATTCTACATCTGTATATTCCACTACATTTCTCCTAGTGAACAAGAGGAATGTTTGTACAAGATACAAACCACTCTTAATTATCTAACAAAAAGCAGGCTGGGTTTCCTCTCTACCAGGCAAACCACTGGAATTTGCAATGCAAATAAATCTTGGGGTTTTCTTACATAAAGGCTGAAGCAAACTTGGGCTGA-CAAAAGCAGAAAGTTTTCAGAGAAGTCATGGTGCTTTTTGGGcagtgggttcaa---------gactccctaagaaaagcaggaga
s HiC_scaffold_1 114746270 2007 - 233722169 GAGTGAACAGGGGCAGATATAACCTGATGGGCAAGTGGAAGCAAGATCAACACTTAATGATCAGTCATTATTCCTCAGGCagtaatgcaaaa-------atcacaaaatttacatatttctgAATA---GCAGATTTATGGAGAATGTAAAGCTTACCTTT--GTATAAAAAGGTCATCATATGGAAGATTAAGTA-AGCATAACAATTTTCAGAAGACATAATCACATTCATCCTGTAACCAACAAATATTTGAGTACCAGATATATATGAGTCACAGCTCTAGGCAT-TGGGAGTATAATACTGAGCAGAATACATAAATTCCT---GAAGTAAAACTGGCATATGTTGggagagaaaatgataaaaagaatcatacacacatatttataatcTAAAGTTATTGGTAGATTATATGAAATGaagtaaataagaacaaaaatatgacAGCATG---------GAGCATGAGAGATAAAGCAGTTGGAAAATACACTGCTCTGAGGGATGCTGATATTTGAGCAGAA-------TGGAGGGATGGAGCAAGCCCGATGGATGTCTGAGAGAAGAAATTCCAAGGAGAAATGAAAACCAGGGCAAGG-CCTTGAGGTAGCAACACACACATCATGTTTGGGAAACACC-----------------AGAGAGCAGTGGGTGATGGG--------AAATGCACAAGGTTTTAGTGTCTAGAGGCCAACGTAAAGCATTTTgatt--tataaatgttataatagAACCATCAGAGGACCTTGGGCTGGAGAATGATACGATTTGGCTTACATTTTATAAAGTGTCTTTAAA----------GGGTTGCCATGTAGAAAACAGATCACAGGAAGGACCAGATGAAACAAAGGAGATCATGCAAGAGGTTACTATT-ATGTTAGAGATGGTGATGGTAACTGGGTTAGAGCATCAGAGAATCACAGTGTAGCTTCAcataagaaaagtttttaaaaagacctcCAGTGGCTACAGGTATCCAACTACAGAATGGCCTAGGTACTACAGAAGAGGGTCAACATTGGAAGAACTTTCACTTAGAACATAGGCCATCAGTCTGTGGTCAACAGGTCAAATATGGTCCACTTCATGtttctataaatacaaaaatgcaaCCGTTTATTATTGTCTATGGCTGCTTTTGCACTGTTGAAACAAAGCTGAATCATTGCAATGAAGACCATTCAGCCTACAAAGCCTAAAATACTTATTGTCTGACTCTTTATAGCAAAAGCTTACTGAACTCTGATCTAGATTTCCTTCCACTCTTCCACAGTTTCTTAGATTCTATATTTAATTATTCACTTGATATTTTTATGTTGTATTGGTCTCATATACTTAGTGTCTCAAGAGTGTGaagt-ctgttttctatttcttaaatATGTCTTTCTATTGTCTAATTATAAACATTCAG--TAGATTCCTTAGAATACACTCTCCTTTGGGAGCCAAGAAGAGTGGTCATTATCattttgtgaaggaaaaaaaCCTATTTCAACTTTCCAAGTGTA-TTACTAATATTTTCCTATGGACATGGAGAAGTCTATGCCATTGACAATACTTACAAACTACCTTAGGTGTTACTTGCTAAAGTTGTCTCCATCATTTTGAGAAA--TGACATACGGGATTAGAAACAAATGTTTGCAGCCTCC---TGATAAACATCTTGCTCTTGGTAATACACTAGGCTAATTGTGATG------GAATTAAATTTCCCAGCCAAGAGGGGCTGTTCTGACTCTCT--------GGTTACTTCTGAAGAGGTACAGGTTGTACATGTGGAGAAGTGAAGGAATGCCATGCCCGAGCAACCAATTACATTTCTCCTAGTAAATAAGAAGAATGTTTGTACATGGCACAAGCCACTCTTAATTATCCAAC--TAGGCAGGTGGAACTTCCTTTGTATCGTGCAAACCACCTGAATTTCAAATGCCTATCATTCTTA---------TTCATGAGGGCTGAAGTCCAATAAGGCTgagaaaaagcagaaattctGTAGAG--GGTGAGGGGCTTTTT---CAATAAATTCAAGAGCCTAATGATTACCTGAG-AGAGCAGGGGA

a score=13788
s chr3           104289294 353 + 160039680 ATCAATTTTAAATAGTCTTGTAGAATATTAATAAGACTGTTGCATAAA--CTCATACTTCTGGAGCTTAGCTTTTAGAATTCTTCCTAGAGCACCCTTCTTCAAATATGTCTAGGGCTGGAAGCTGTTTGGTATGTGATTGTTCATTCGTGCATACACACCCCTGTTTACTCAGTGCTTCTGAATCACTTAAGACCGATTAATCTATGTAACCATTCTGGGCCGCACAGCAAGCCTTAATACAAACACCA-CTGTGTGCTTTTTAACCTAGGAGAGACAGGGTGCTGGGGTAGGAGTTACAAAACTTTACC----------AAGC--AACTCCAGATA-CTTGGA--------TTTTCCCATCTATAAAATACAAGt
s HiC_scaffold_1 114749155 367 - 233722169 ATCAATTTAAAGCAATTCTGTAAAATATTAATAGGACTGTTACATAAGAGCCTTTGCTCCTagaatttagcttttaaaatctttcctaGGGCACTCTTCTTCAGATATATGCAGG-TTAAAAGTTATTT--TGTGTTGCCATTCGTTTGCATACACACACCCATATTTACTCAGTGCTTCTGAATCACTTAAGACTGATTAGTCTATCTCACCACTGCAGGCTGCATAGCAAGGGATAATCCAGGTGCTACCTACGTGTTT-----ACTAGGAGGGGAA--GCACTGGTGAAAGATTTACAAAACTCTCCCAGTTAATCTGAAGCAGAACACTGGACATCTTTGAGCTTCTGTTTTCTCCATTTATAAACTGGAAAT

a score=30057
s chr3           104291909 1285 + 160039680 GTTTCTAAGTTCTAAATAAG---ATAGCTTGACCT-GAGACTTCTGTTCTCATCTT-------------TCCATAAAATGTACTAAGGACACTGAATCACTAAAATTTCTGGTGCATTTTTCTCCCATCTGGATAGGAACAAAATATTTGGAGTCTAAAAATTCTCAGAAAAAAAATCAAGGCTTATGGACCTATGACAGCTTCTGAACACACCCAACTGAAGAAATAGGGTCCAACTTCAAACACAGAAAAGTAATATGTAACTTGGTTATTACTGACAAAATGCAGATGCTAATTAAGCAAATGGTTTTTTTTTTTAATCCCATAAATTAAAAACAGAAAGGAAAACTTAAGAGCAAGCATCCTGTTTCAACAAGTGTGTCTC--AGCTTTTCCTTCACAGGAACGCTCTGAATCCTGAGACCCACTGGAATTTTCTCTTCTTCTCAACAACTTTTCTTCTAGCAGTAGCaaaaaaaaaaaaaaaaaaaaaaaTCAAACTAAACCAAAAACAAACAACAAACAAACCCAGGCCTATATTCAGGAGAGACAAACGTTCCCTTTCTTTTACAAAAAG---TTAGCTGTGGGAGGTGGAGATTGACCTGGGCAGAAAC--TGAGAAAGCAAGCAGTCCGCACCACAAACTACATGTGCGAACTTCAAGATAACCAGTGGGTAAAAGACCTAACCG------TTATTCTTAAT-TTGCTATAAACCTTGCAAGTTTTGGTTTTGAATATGATCG--TTTTATCAGATGAAGTATAGGTAAAAATGCAAAAGGGAAGGAGGGTGAAATTTTTGTTAGCAAAACTAAGGAAGAA-AAAGTGACCGTGCCCATACTCAAAC-TTTAGCTTTCCAGTAACCAACGCAAAAAGGGAAACGCAAAGCGGTCCCTTACTTTT--CTTCTATCAGTagcaaaaaacaaaacaaaacaaaaacaaacagacaagcaaacaacaacaacaaaaaccaggccccttagtcaagagagacaaacgtttcctgacacggagctctgaaaataatttatcacagaggttttta-aaaaaggaccttgagcaatttaatagatgatattttcCAGCTAAGAGAGTTTACATATGTATGAGAGCTAAGTTGTTAGAAA--CGCTCCTCCATGCGGGATAGGAAAGGTGGAATCTTTCTTTCTTACAC----ATACTCATA------CCTACATCTTTGTCCGCACATACATACCTTCGAAAGGTATGTGG---GTACGGAACTGTGACCAGAGAGAAGCCACAGCAACGATGCCATTACTCATGTCGTTCCAGCAATGTAAGAGGTGAACTCCCTC
s HiC_scaffold_1 114750016 1122 - 233722169 GTTTCTGAGCACCAAATGAGGATACAGTATAATCTTGAGATTTTCGTCCTCTGGCCAAGTATAAGAGAATTCATGAGTTGCACTGAGGACACCAAATCACCagaatttctagaatattttttccatgtC---AAAGAATCAGAATGTTTGACACCCAGAAAGGCT----AGATAATTTAGACTTTGTGGACATGATATAGATGC----------CTATTTTGAAACTAGAATCTAACTTCAAATGCAGAAAAGTGATCTGTATCTTGGTCATTAGTGAGgacataaaatttttaatgaggCAAATGTgctttt-------------------aaggaggaaaagaaggccAAAGAACAAACATTCT--TTTATCAAGCAGGTCTCTTAGAATTTCCTTTGAGGTAACCTTCAGAATCCTGTGGCCCAAAGAAGGTATCACTTCCTCT----------------------------------------------------GCTAA----------------------------------------------------TTTGCTGTAATTTACAAAAAGAGGTGAAAGGTGGCAGGTAGAGGATA----TGGCAGAAACCATGAAAAAGTAAGAAGTCTGTACTGCAAACTACAC-----AGATTAAATATTA--------TAGAACATTTCATGGGACTGCTTATTCATATTACTGTTATAG----TGCAAATTTAGATTTTGTATAAGATTAAAGTCTATCAGATTTAATACTGATACAAATAGGGAGGGGAAAGAGA-TGATATATTT--tagcaaaaacaagaaagaagaaagtgataGTGTTTACACTAAAAAATTTAGCTTCCTAGTAACCAAGGCAAAGAGGAAAATATGATAAGTTATATAACCTCTTCCTTTTTCAAGTGGAAGGAAACA------------------------------------------------GGCCAATTATGCAGGAGAGACAAACCTTTCCCAACACTGAGCTCTGAAA-TCATTTGTCACAGAGGTTTTTGTACAAAGGACCTTGAGTAATTTAATGGATGATATTTCTCAGCTAGGAGATTTTACATATGTATGAGAACTGAATTGTTAGAAAAACATTCTTTAATCCAGGATGGGAAAGACAGAATCTTTCTCTCTTATACCAACATACTCACATTGACACCTACATCTTCATCCAGGCACATGCACCTTCAAAAAGGATGTGGCCCAGATGGGAC-ATGGCCATAGAAAAGCCACAACTATTAGGCTATTACTCATGTCTTTTCAGTCAGGTAAAAGGTGTACTTCTTC

a score=89381
s chr3           104293705 3542 + 160039680 TTTCTTCTCTTGAGGAGGAACGGAGAGCCAAGAGGATCCTAAGTAGGGGAGACACACTCTTACACCATCTCTGTGGCAAATGTCCTTCCTAGCTTGAAGAAAAAGACCA-------GTATTGTGACCCTAAGAAAGCCAACACATGAACTAGAGA-TGGTACATGCTTGTCATGTAGGATGTAGGTAGAAAAAACCCAACTGTTTCCATCTGGTCCACTGG---CTCTTGGTATCAAAAAAAAAAAAAAAACATGGCAACTACACAGAGAAAAGGATGCCAGCAACCGCACAGAAAGCTGTGCTTTTTAGAATGCAAGTGTGATGCATGACTACTCATTAACGACCCATCAAAACAAACCGTGAACAGGCCACTAAGTGCCACTTTGCTGGATTAACCCTGGGCTGGGCCCTATGTGCTGAGATTTCAAAGGTCCTTTGAAGTTAGAGCATTAAGAAATCACTTTCCAAGTCAGATCACCACCAATTCTAGATGTTTCCTAATGGCTGAGTG---GAAGAAGAGCTGACTAATTCTTTAAATTTTAACCAGGAAGGAAAAGAAAAATAATGTTCTTTATGATGGGCACAATAACCACCATGCATCCCAggactggggaggaagctcagtggaatgcttgcctagcattcatgaggtcgtgggttcagtccccagcactgcataaactggccacggtggtgcacacttgtaatcccagcactatagtttcacataggaaggtcagaagttcaaagtcattctagcctatatatctagatcatctcataaaaacTGATGCTCGTGATAATGCCCAATAACCAATAAGAAAAAAATATGGAAGCAGATGGTACTTGCCAAGGGTGATTTTCCCCCCTTCTGGGGAGTTGATTCCTTTCACATGCTCATAACAGTTCTATTCCTTAATGTAGCCCTACATCTTAATAATCTCAATGTAAGGGTAATTTCTTTAAAATATTAAAGTTCGACTTGCCATTAAAGTGGCCATTATCATCCTTGATGCCATTAATATTACTTTATCGACCTTTCAGTCTAAGGAGTGTGGAGA-------------AATTGGTCTT-TGCTTCTTATTAGGATCTCTCAGGTTTGACTCAGGATCTAGGCTGTATAAGACCTGGAGGCTGCAGAGGGGACCAGGGAAGC-TGCACTCTGC-----CCTGGGGCATCAGATT-TGATGCCTACTGCAGCCTGGAAGTCGCTGGCTTTCTAGGT-TTCAGAAAGAGGCACACATATCCAGT-----GCCTGGAGGGGCCTTCTTCACAGCATCATCACAGCTCTGAGGAGTTACAAACAAA-CACACAAGAATAAAGACATCAAAACACGGCACATC-ATTAAGGAGCATGGAATAGAAA--CACGGCTATTTTA-GGTAGCCATAGCATTTGGTTGTGAACCTCAAGACTCTCCTGTGATCACATCTGCGTATATTTATAAA-----CTTAGCATAGAAGCATGCGTCACAACTGATCTCTTGAA-GTAGCAGAGGTTTCTGTGTGGGGGACGACTGTGGAATGTGACTGTGGGAT--------TTAAAAGGGCAGGGGGGTGGGGGAAAGTAACTGTTCCAGCTGAGCGACTCTCCACAATGCGTTTTTGATGCAGTGACTAATTATTGTGATTATTTTCATCAGCAAAGACACCGGTAGAGCTAAACATATTTATTTTCTTTTTTTTTCCTCCTTGAAAAGTATAATATTTCAAGCTTTAGAGAA------------ATTCCATATGTCTCCTCCCTATACTTAGGAAGTGTGCTCTCAGATGTTGTCACAAATGCTG----AGCTACCTTGCTTCCCTTGTTCCTTCTGAGACAGTGTTCCTCTCTTCCA-GTATCAGCTTGATAGAGCCAAGCCAAGCTTAATGAAAACACCCAGCCTCTGCC--TTGCTAATATCCTCAGCTGACCTTCT--GGGCTCCCTGTCACATAACTACATAGAGCTGGTTGCCAA-ATGTTAGAATTTAATCTAATGAGCACTCACAGTATTTTGATAGGGGGGAAAAGTAGTAAGTATAGAAAGTGTAAGTCTTT---AAAGTTAGAGTTTTGTTCCCTGTAAAATTATTGGCCATAGTTTTAGAGGTTTATATTAAACATGCTCTCTTTAATGAATACTGAGC-AGAAAAGGTACAGAAGAGAGCCA----GGGTCCTGTTCCCACAGT--TAGGAA-GCTGAAAGATGAATGTGTTAGATCAAACAATACTAACTATCAAACAAGAACAAATCTTTAAACTTCTGATTCCCTACACGTcatg-----------cacacgcacacgcatgcacacacacgc---acacGTTCTTTGCACAACTGAGAATGATACACCAATTGAATCTGAAGTCAAATGAGCAGAGCTGGAA-GCATATTGCTCAAGACGTGGCCTGTAAGGAACAGTCCAGCTTTT--AATAGTGAGTCATCCTCACTGCCATGGAAACAGAAACCG-----------ACAGAAGCCCAGTGAGT-----------------------------------------------CTGTCCCCTTCTCGTCCCTAAATTCTTATGAAGAATAAATGCCTTAGCCTGTATGCATT-CTTGAATTCATATTATT----ATTGAGCACACTTCCATTTTTTTTAATTCATCACATAATCGTCCTTTATTTGCTCAGACAATTATGTGGTTAATTTGATTTTTCAGTCTTTGAACAAACTTTTTGGTAATTTAAA-TGCCTAATGAGTGGAAGACATCAG-ACCACCCTCCCTTCCACATGAGTAAAGTCCATCCAAGAATGATCATGCGTGAAAAATCAAACTATATTTCATTTTCTAGAGCTGACTTAAGTAAATGTAACCACTATACATTCACCTAAC----AACATTAAAATTCAGAATCCCAGAATTAGGACATCACAACAGTGAAAAAAAAATCAGTAACTGAAGAATACTCATTTTTAAAATTTAGTGTGAGGGGGAGATTTtgtgtgggtgtggggggcatgccatgacccattgtctagagattagaggacaactttgtggagttggttttctccttccatcttcttgtaggttctggggattgaacttgggccagctttgagcagcaactacctttagccaccaagccaATTATCCTTCTTTTGATGTGTGTGTGTGTGTGACAGTAAAAACATATGAAACTAGATGGAAAATTT-TAGCTACAAATTTCAGAAAGCTTGTTTTAATGGGGCAGTGAGACCTGCTGATATCTCAGTGGAGACTATAAATGTCAACATATCTCATGCTTTCTTCATTCATAATGGCTTCCCTTCCACTCAGACTATGGCTATTTATTACACAACAAAC--TAGTATTTAAATGTCTTTGGTCTTACCAAGAGCACTAATGAAGATCTACCATTATGAGTTTTTCTTTCAAGCACTTTTGGAAACAACCCAAAATTAGACTTTTCACCTTTGATTGCAGAGAATGGCTTAACAAAATAGTAATTGTGGAACTTACTCATATTTATTGTATTTTTCTTAAAGATAGCC----GGAATAGATTTCATATTTCATCATAGCGTCATAATGCAGCAGAGTGAACTTAGACATAAGCCACTCCTTGCTCCAGCGCAATCACTAAATAACCTTATACATGGGGAATCCTCCGTAAATGACCTTTTCTGA
s HiC_scaffold_1 114751227 3097 - 233722169 ttccttctatagaGGAGGAA-----------GAAGATTAACGATAAGGGAGACATGTGCTCCCACCGTTTCTGTGGCAAGAGTCCTTCCTGGCCTGAAGGAAAGAGCTAAATCTTTGTTCTACAATCCTAAGAGAGCAGGCAAATGAACCAAAGAATGGTGTATACAAGCAA------ATGTAGATGAAAACAATA---------------GGTTCACTAAATTCTCCAGGTT------------ATACAGCATGACAGCTTCATAGAGAGA--GATCAGAGCAACAGCACAGagagatttctttttcaaaacactAC-------CTTCAATGTTTATTAAAGACCTATCAAAATGAACC----------CAGTAAGTGGTACTTTCATAGATTAACGCTGGGCTGGGTCTTACATTCCAACATTTCAAAGTTCCTTTGAAGTTGGCCTATTAGGAGATCACTTTCCAAGTAATACTACTGTATGCTTAAGATGTTTCCTAATAGCTCTGTGATGGAAGAAAAACTGACTAATTCTTTTGGATTTAACAAGGGGGAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATGACAAA----------------------GTGACATTTGCCACGGGCCATCTTTTC---TTCTGAAGTTTCATTTCCTTCCAGA----------AGTTCTATGCCCTAATGTAGACTTATACCTTAAT---CTTGATTTAAGggaagtttctttaaaatattaca-tttgacttatttttaatgtagccattttcatctttgattttGCCAATACTGTATTAGTG-CCTTTCAGTCTGACGAGAGTGGAGACCCCTGTAGGAGGAATgagttttctgtttcctcttgGGATCACTCAAGTTTGGCTTGGGGATGAGGC-----ATGTGCTGAAGGATAAAAAGGTGA--AGGACAGTGTTCAATCTTCATGTCTCTCTAGCACCAGGTCCTCACACCTCCTACAGTCTGGAAGTCACTGACTTTCCTGGCGTTTATGAGAATACACAGGTACTGCGCTGTAGGCCTGGAGGAACTTTTTACACCATCCCATTGCTTCCTAGAGAAGTCACAAACACATCGCacaaaaatagagagagaaaaatatatcaCACCCATTAATGAGTACAGAATAAAAATGCACGGCTATTTTAAGGTAGCTCTAACTTTTGGATGTGGATCTAAAGGCTTTCTTGTGATCAcatttgtgtatatttataaatttatcttGGCATGGAAACATGCGTCACAGCTGATCCCTGGAAAGTGGTGGAGGTTGTGCTGTGGGGGTTGAACATGAAATGTAACCAGGAGATGAAGCTTCTTAAAAGGTCAGTGGGGTGGAGAACAGTAATTGTTCCAGCTGAGCTACTCTCCACTATGCATTTTTGATGTAATGACTAATTATTGTGATTATTTTCATCACCAAAGACTCCTGTAAAGctaaacacatttattttctctttt---catctctaGAAAGTAT-----TTTCAGCTTTAGAGAATTCAGTATGAGAATTCAGTATGTCTTCTACCTATCTTTAGGAAATATGCTCTCAAATGTTTTCACAAATAGTTTTGCAAATACCTTGCTTCCCACTCCTCTTCTCTGACAATATCTCTCTTTTTTATGTATGGACTCAATAAAGCCAACTGGAGCTTAATGAAAACAT--------TGACAATTGATAGCACCTTGTCCTGACTTTTTAAGGGCTCG-TGTCAAGTAACTGCATGCAGCTGGGAGCTAATAAAATAGAATTGAATGTAATGAACTGATGTATCATTTCCatagg----aaaaaaagtaaacatacaTGCTATAGactttttccaaaattat-ttttagtctCTGGAAAAATTATTGCCCATAGTTTTA--------TATTAAATGTGGCCCTTTTACTGAGCATTTATCTAGAGGAGGAGCAAAAGAGATTTGTTGGAGATTATATACCCATGGTGGTAAGAGTAATGAAAGATGAGTATATTAGGT------ATA-----TGTTATATAACAATAATTCTT-------CTAATTCCTTACATTTTGCAAAgagttttcacacacacacacacattctcacacacattttatttgttctttgtgcAACTGGGAGTGATATACCAACTGAATCTGAAACCAAATGAGCACAGCTAGAAAGCATAGTACATGAGATGTAACAACTAA-----AGTCCAGTTTTCCAAATTTTAAGTCATCTACACTGCCATAAAAACAATCACTATCATACTGATCATAGGATCTTAAGGAGTAAATGAAATAGAGGTTGAGGGGAACATATTAATCATATTAtcatattctgtttctgtttcttctcaaaatttttatggggaa-aaatattttagcttGCATGTATTATTTAAATCCATATTATTTATTGTTAAATGAAGCTAGATTATTTG-ACTTTGTAATATAATAGGTAATTATTTGCTCAGACAACTATAtggttaatttgatttttcaggcTCTGAACAACATGTTTGGTAATTTAAAGTACCTAATGAGTGAAAGATATTGGGACCACCCTTCTTTCCACTTGAATGAATTATTTCTGAAAACAATCATGCAC--AGAAGTAAAACATATTTCAACTTTTAGAGTGAATTTAGGTACATATGACCAAGGTTCATTCACTTAgtctttaatattaaaattcataattCCAGAATT------TTATAACATTGGGCCAGGA--CAG----------------------AAAGATCAGTGTCAAGGGGATATT-------------------------------------------------------------------------------------------------------------------------------------------------AAG----------------------GTAtctgtttatta-aataaaaacttgTGAAACTAGATGGAGAATTTATGAGCACAGATTTCAGAAACTTTGGTTTAAGATAACGCTGGTACCTGCCAGTATCTCAGAGAAGACTCTGAATGTCAGCATATTTCATACCGTCTTCACGGATAATGGCTTCCCTTACACTCAAATTGTGGCTATTTATTACTTAACAAATTGTAGCTTTTAAATG--CTGAGTCTTATCTAGAGATGTAATGAGGGTACACcattatgaa-ttttctttcaggca--tttggaaataatccaaaaataGACATTTCATTGTTTACTACATAATGTGTCTTAATGGAATAGTTATAGTGAAGATTAttcatatct----tatttttcttaggGATGGCCTTGAAACATACATTTCACATTGCCTTACTGTGTCATAAAGCAGTATCGTGAACT------TAAACCACTTCTTGCTGTAGCACAAGTATCAAATAGCTCTACAAAAGAGAAATCCTCTTTAAATTGCAATTTTTGA

a score=114876
s chr3           104299729 5391 + 160039680 [encoded data, 5940 characters]
s HiC_scaffold_1 114756083 5030 - 233722169 [encoded data, 5940 characters]

a score=72673
s chr3           104306058 5405 + 160039680 [encoded data, 6414 characters]
s HiC_scaffold_1 114761324 5798 - 233722169 [encoded data, 6414 characters]

a score=65291
s chr3           104313155 3619 + 160039680 AGAAAAAGAAA---AGAGAAAAAGAAAAAGCCAGACACAAAGCTTGGGATACAATTGATCCACCAGACCAGGCTCTGGGAAACCTGTTTT-ACAA------------------GGGGTGAGCTGGCCAGCTCAAAGGTACAGAGCTCAGGAAGATAA------------CAAGCCTCACCAGTTGTTAAGATGCTTCACCCTGTTTC-------------------------------GCTTGAAGAGTTAGTTTCAGGCActgaataacaaacggttccaaaag-agagactctggacaacctctgcttgttttttcacaagtctgtttgttggtggagctggtctgctccctgggttggactcattctgtat-ttgaagtcagccagcaggttgcctggg------tctgggatatttatgatggcctTGGCTATAAC---TCAGCTCTCCTCAA-----CACATTTCCTCAACACAACCTCCAGCCGGCTAGTGTGAGAACTTAGAGTTCAAGAGAAGCAACATGCAAGTGGGTTGGGTTTTTGTTTGTTGTTGTTGTTGTTGAAGCTCTGGTGTGTTTGGAGTGGACG----------CTGTGTCAATGTTTGTTATTATCCCCTTGGCCAAAGC----AGAGATGA-----------------GAGTAAGTATGGAGAGGTGCTACCCAGGGGTATGAGTACAGACAGACACGTGTGAAAGAGTGGGCCATTAGTGTAGTCTTTCTTCACAGGAGAGAAGAAAGAAGGTCAACTTGGTGCTATTTAGGAAGGTCATATTGGTCATATTGGTGCGTTGGAGGGAGGTGATGTTCACCCTGGAAGGCCAGGTCA--CAGGATGTTTTAATGATCTAGATAAGAGATGGTGAGGGTTCAAGC--AGGGTCTGCACCTGAGTAGAAAAGG-------GATTTCTAAGGACTCAGTAAATCATGCCTTCTCCCCTCCTGGGGTCATAACCAATCAAGC------CATCTGGGTTGAGAAGAGATGGCTTGTTCAGATAATGTGGCTTTATA---GCAGTCAGAAGAGCTTTCTCACCCACTCTGGACACTTTAATTACCTGTCTGCCAA--CCAGGTCTTGCA-CAGCCCTGCAGAGTAGGTCCTGACCCTCAGGATCTGTTTTCCATTGGCCTATGTCAAGaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaaaaaagaaaaagaaaaagaaaCACAATGAACCTGGTCTGGAAGTGGCCAATCCAGT------CAAGGAAGTCTTTATCAAGAGAGAGAAAACCAAGCAGGGGGAGCCCAGGAAGGATGCTCCAGTGCATTTCCTGGAACAACCCAGAAAATGTATGATTTTTGTACCACTGGGTCTTTTCTGGTGACTTCTCAGTTTTCCCACTGCGGTGCAAAAG-CAGCCCTTGGCA-------------GTCACATGACCATGTTCTACTACAGTGTCATTTCTGAACAACAAAACCTGCATTTTCAGGTGCCCCAGCAA-AGTCTGTTGATTCATTTTCGCTGTTCTTTAAAAATTAGAAACCAAACctgagcatggtgggtcataataacctactatggaggtagaggcaggaggctcttgagttcaaagccaacctcagctacccagtgagttctagaacattcctagttatatgagatcctacctcaacaaacaaaCATTAACAATAACAAATAAAAACTTCTTAGCCTGTGACTTGTATGAAAGTGGACAGTGGTTGCACTGGATCTGGAGAGCAATGATTTAGTAAAAAGCCCTTCTACAAGGAAGTATGAAATTAGGAGAA--AGTAGTTCTACTATGAT-----CATAATGAGGGTAACTTTT-AGGCCAGCATTTTAAGAGTAGTTGCTGTATCATAGGAAATGACATCAATAATGAGAGTTGTTGGATCATAGGAAATGACATCATCAATGATGAGAATGACAACCTTCAAGT--AGGGAGTGGAGTGAGGGAGACTCGGAGATGAGAAAGAAGGGT--GCTATTAACATTTCTGAGTGTCTTCTCTGCATAAGACACTGTGCATATGGTATTGATCTTTCCCAGAATCACGTAAGGTCTTTTTTTTATGACCTCCAATTTGCTAGCAAGAAAAAAGAATTTCAGA-AGGTTAATTAACCAACTTTGTCCCA--TCAGGGACAGAGTTAAAA-------TTTTAAAACTAACATTCTTCTC-CTTAGCTAGTACACTGGTATTCTGCTGTAGTCTCCAAGTTAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatacatacatTCTGATGAACTTAGTCTTCATGGTACTTCCATATTTTGCTTTACTTCTATTTTTATTTTCAAGACAGGGTTGAAATGTGGTTTTAGGATGGGGTTACGGGCAGGTGTCACCATTCCCAACTTTCATAGGACCCTTGTCCTAGCTCAAAGAACAAC------ATAGTC----TTCAGAATGACAAATGTCCACAAGACAAAAAGCTGAGTCTCGAGCACTTCCATCCCTAAGGGTTCTTCGCTGTCAGCATCTTTCCTTCAGACAGGGAAACAGCCCATAACAGACAGGATCCTTTCTTCCTCCTTTTATGCCTTTGCACATttttttcaatagtgaagtgacactcacataacatatccaaagccatttcaaaag-gtacagttcattggcattcaaaatattcaccctgctgcaaagccatcatctctatcaa-ttgccaaactcaaagcac-tttctcatcttggaaggTACTTATC----------GACTGGACAGTTTCTTGATGCCAACATGGGCGTCCATTTCATCTTCACACTCTTAAAAACATTCCTAAGATGCTCAGTGAATCTGACTTGGATGGCGTTCCACATACCTCCTTCCCCAGTTTCTTTTCTGAGCCGCACTTGAAAGGCT-CATCCTGGATCAGCCTCTGAGCGCCCTTCCTGCTGGGCACCT------CATCAAGGCATCAGAACAACAAGCTTCACAGTG-GACTAGGCCTCTGTCCTATTTTCTTTGAAGAC-TTTCTTTCCTTCTCCTTTTCATCTGGCTGCACA----CAGCCCATGTGGATATTAATTTGCACTGAACTCTGGTTAAATTTTAAATGTGCCTCCAAATTTACA------TTCTAGGCGAAGAGCCACAAATTTGAATATTGAAACTCATTAAATAATTAATTTTTCTAGGATTCCTTCCACTCTGAGAACAGCAAATTTCCCAAGTACATAAATATGAGCTCAGAGCTTAGAAATTAAGGCAGATGATGTGTGTACAATTTCAGTGCAGAGCTAGAGGAAAGCGTGCATTCTGTTCTTTAAATTACAATTTATTAGTCAAGGGGGTTAC------------------------------TAAAAAACACACTCCATAATCTAATTT-CTCTTTGTACAAATTGTCAGATAGAAACCAAATCTTCCAGTTATTGCTTCAGAATGTTTCAGTCCCCAGAAATAGCTATAAATTAGACCCATTCACCATTGGAAAGCTCTGGGTTTTCTGCATTACAATTCTATGCAGTTTATATGTTATGCAAATTGAGCTTTTCTGAATACCATCTAATGCATTTATTCTTCTTCAAAATTAGCTAAACACCAACTTTTTTCCTGCTAAATTCATCTCCCTACAAAGACAGGTATAAGGACAATCGTCTGACGTGTGCTATGGTTTATTA-----TTATTGCCAAAATGTATATGGCTGGACAATAG
s HiC_scaffold_1 114767468 3175 - 233722169 agagagagaaagagagagagattgagaaaacaagacacaggGTTCATGATACA---GATGTACTAGGCAAGGAGGTTGAGAACCTGTTTTTACAATAATGACTACAGATTATTGGAGTGCACTGGTCATCCTAAAGGTATGGGGCtcaggaaaatgaggaaagatcTTGTATATGTTACTAA--ATTAAGAAGTTCTAGCTTCTTACAGAAGCAATTGGAAGCATTTAAGAGTTTTCAGATGGAACAGTTAGCT---GTTGCTCAGTAAAAAACTACCCCAAATGCAGAGAC----GTAAACTTCAA-----TTTTTCACAAATCCACTGGTTAG-----------------CTGGGTAGCATTTCTTTTCTGGGTTGTAGTTAGCTACCAGACAGGCAAGGCAAAGATCTGGCTTATTTAGGGTGGCCTTGACTAGGACACCTTGGCTCTCTTCTGTGTGTCTCATATCTTCAACAC----TCTTACGGTATCGCA---------GGGGCTCAAGAGAGGAAGAGT-----TACACTGTGCTTTTTCAAGTCTCTGCTTGTGTCAAACTTGTTATCCCCTTGGACAGAACAAGCCACATGCCTGAGTCCAG---TGATACTGAACCTTT---CAGGGCTTTCAGTGATAATTTGCCACCACCGGCTAGAATAAATATGGAAAGGGACTACCCAGGAGTATGGGTACCAAGAGGCA----TGAAAGATTGGATCATGCATATAATCAATCTTCACTGTCGAGAAGAAATAAGATCAGATGTGTGTT--TTGGGAAAATCGCATTGGCTGCTCAGG---ATTGGAGGGAGGTGATATT------GGAAAGGGAGGTCATTCAGG---TTTTAATGACTCAGAGGGGAGAAGATGAGGGT-CAAACTAAGAAACCAGGGCTGAGGATAAGGGGATTACTGGATTTCTAAGGAATCAATAAACCAGACTTTCTTCTCTTCTGTCatcagaagcagctgagagaTAAACATATGGGTTAA--ACAAACAGCTGATT-AGAGAATGCAGCTTTAAATCTGCATCCAAAAGAGCTTTCTC---CA--------ACTTCTAC--CCTGTCCTTCTAGCCCAGGCTTTGGGTCAGTCCTGCAGAGTAGATGCTGTCACTCAGCACCATTACTTc-----ccta---caaagaagaaaaaatagagaatgaaaTCTAG---GATAGATTGTCGGTACCATATCAAGAGAGTTTCCTGGTAAGTAAGTAAAGGGGGCAGGAAAAAG------------------------CTGGGAGTG---AGTTCATTGGTGCACACCACACTTTTTGT------------------GCAAAGG----CCGGGAGGT-----------CAATATCTGAAAC------------------TTTGTGGACCACTGGATCTCTGC-AGCAACTACTCAGTCCTACCCTTATTGTGCAAAAGGCAGCCATAGGCAACACATACATAAGGGAATGTGGCCATATTCCAATACAACTTTACTGATGGATAGCCAAATGGGAATTTTCA--TGTTTCATTAATATTCTTTTGACTTATTTTCAAccatttacaaaattt-----------------------------------------------taaagaca---------------------------------------------------atttgtAGCTATAT------------------ACAAACA-------------------------------------------------GGTGGTGGTCGGATTTGGTTTCAA-ATCCCTGCTCTAG-GGGAAGTCCTTCTGCCTGAAAATATGAAGTCGGGGGAAGGAGTTGATCTGGTATAATTGTAACCTAATGAGAGTAATTTTTCAGACCAG---------GGTTGTTGCTGCTTCACAGGAAATGATTTCTGTGATGAGAA----------------------------------------------CTTCAAGTCAGAGGGATGAGGTGAGGGGG-CTGGGagatgggaaaggaagggaggctATTAACATTTATTAGTGTCTCTTCTGTGCAATACACCTTGCATATGATATTAATCTTTTCCAAAACCATGTGAGGTAGTTTTT--ATGACTCCCAATTCACTAGTGAGGAAACAGAATTTCAGAGAGGTTAACTAACTTAATTTGCTTGAGGCCACATAGTAAGTTGGGACACTTGTTTTTAAATCTAATGTCTTTGTCTCATCCCCCATTCACTGGTACTTTG---------------------------------------------------------------------------------------------TTCAGATGAAA-----CTCCATGGT--------------CTCCAACTCTA--------------ACCAGGTCAGGAAATACCTTTATAATGAA----------------------CCTACTCTTCACTGGACCTGTGTCCTAACACA--GAATGGCCAGATAATAGTCATGTTTCAAAATACCAGATGGTCACAGAACAA--------------------------------GGTCCTTTA---------------------------------------------AGGCCCCAAACTTCCCCCT-----ACCTTTCCATGT-----------GTGAGGTGAAATTCATATATGATGGCATTAACTTATTCAAAATTGTACAATTCAGTAG----------ATTCGCCATGTTGTGGAATCATCACCCCTAGCAAAGTGCCTACTGTATAGCACATTTTGCAT-----GAGATATTCATCTACCACACCAGACTGTGCA-TGTCCTGAAGTCAACATCTGTGTCCATTTCATCTTCATACTCCTGTAAGCATTCCTAAGATGTTCTGCAAATCTGACTGGGATGGAATTCCAGATACCGTCGTCCGTGTTTCTTCTCTTGAGTGGCACTTGAAAGGCTGGATTTGGGGTTTGAATCTAGG----CTTCTTACCAGGTGCCTTCATTCTATCATTGAATCAGATCAGTGAGCTTCTTAGTGCAACACTTTCTCTGTCCTATCTTCTTTGAAGAtacttttttcattccctttttcaTCTGACTCTGCAGTATTAACTC-TGTGGATATTAATTTACATTGCACTAtggttaaattttaaatatgcctCCAAATTTATATTCTGTTTCTAAGTGAACAACCACAAATCTGAATATTGAAATTCATTAAATAATTGATTCTT-TAGGATT-TTTCCACTTTGAGAACAGCAAGT---ACAAATACGTAACTATGAACTGAGAGCTTGGATATTGTGGCAAA-----TGTGTACAACTTCTGTGCACAATTagaaaaa------tagtatattttttaaattataatttattagtCAAGAAGTTtacaagaagaaggaggaaaaagaggaagaggagaaaaagaaggaaaccttTACTTATTTTACACTTTCTAAAAATTGTCAGAAGCAAAGTAAATGTTCCAGTTAT----------TGTTTTAGTCCCTAGAAATAGCTTTAAATCAGGCCCATTCACCATTGGGAA-CTCCTTGTTTTCTGCATTACAGTTCTATACAATTTACATGCTTTGCAACTTGTACTCCACTGAATACTGtctaatgtgtttatttttcttcaaaattagcTAAACACTGTCTTCTCTTCTGCTAGCTCCATCTCCCTGCAAAGGCAGGTGTAAGGACAGTTGTGCGACACGTGCTGTTGCTTATTAGCTCCTCTTTGCCAAAATATGTATGACTAGAcagtgg

a score=73421
s chr3           104317388 2513 + 160039680 AAGTACAAGTGCTCCATTTACCTTT------------------AGCTTTTAGGAAAAACAGACTC--ATTTCAGGATAGCATTTCTCATTCTCGATCACATTCAAGTT----------------ACCACTAACTGGGGTCTAATTCAGTTATACGTCCTGTGGGAAGGTAGTCAGTCCTTCTAAAGCTCTGATCTTCAGATCTACTGTTTGATGGGTA----GGTGCTGCATGAAGG-------ATTGCTTACATCATCAAACTCAGATAGGCTGAGTTCAGCAGCTGCTTCACTGAGAAGCATAAGGAAC---GCCTTAGTGCTGGGTAAAGACAGAAAGACGTGTGACTTTTCTCACACAACGGCAGCAGCAATGT--ACATGCAAAGGATTTGCCAGAGT--TACTCCTGGGAAAGGGTCCCAGAGCTCCCTGAGGAAGTAATGAACCTCATTATCAAC---TCTCACGCTGTCACAACAATGGAAGCTGCCTTTTCAGGACTCCATGTTAAGGA------------GGCTTCCAGAAGAAA--ACCTTCTGAGAGAATTAGTACTCTAGTGCA------CTCAGAGAGTGCTTGGCTAGACAGAAACAGCAAAGCATGGGCATCACTGTTTTGTCCAAAGCAGTTGAAAAAAAATTTCAAGATG---------GAGACAATCTCTGGGGCT---CTGTAGA-----CAgagttcaagacc--------------ccagccc--------------------tctgtattagcaacgtgaactctagccagctaagtgttttaaa---cctcaatgtccatgtttgtaagatggagataagatttactacccacctcacagagtggtCCAAATCTTAAG------CCAGGAGCTGAAAACT-GTGATTTAGAAATGTT----------ACTTACGAGAACCATCTTGTTAGCATTCTCTCTACTC--TAGGGCTGGGATGACCCATTGAACTAACTGAAGCCAATA--CGTCTTGCTCCCTTC-GTATCCTAAGTCCTTCAGAAGAGTCCTAATTGAAGTTGTATATTAAATATCTAGGTAGGTCTATGTACATATT--GGCTTCTATTTTT----TTTAATGCACAAGTAttttaactgacacataaaaacgtaagctttatatatgtatggagtaccacacaacattttgagacatatg--agttgtgtagtgttta------aatg---------agggcaaacacttcagtctactcacctaacatttat-----------ggtgaaaacattcaaaactctctctgccagctctttgaaatacactatgcattgctgttatctgcagtcaccctactgtgcacagtcaccctactgtgcacaccagagcggcttgctcctgtctaactctaCACTCCTATTTTTACAGTGGGTTTGATTTTATAATTGGGGTAATACCTCAACACATAGACAGTGCTCTCTTGGCACTAATAAGTCTATAAAAAGGTTACGTCTCTGCTCTGTGTCTACAATTCTCTGACAGGTCTTCTTCCTGGTAATAGGTTTGCCCTTAA--ATCTTCCCTGGTAGATCTTGTTTT-CAGAAAAGAAAGGATATTGGTGTTTAATATAtatgatggatttttaaaaaacagtaacagtcccaaatagatcctgtctcccaccctcacatatttgagctgttccctcccaccttggctctggacttggccacttgagttg----gcctatgggatcattatcaaatttgacagaagcaggggctggacacggacttgccaattgagcttgactcgttcttgttgttgagaactttc-tggcagtaggtgaagaaacacaagccagcctgctggagagaacaacctagacaccagccagaaccccctcaccccaacccccatccacacgagcaaaggcattgtaggct-tccagccccgtctgagttgccagctgcctgcagccgcatgaatggctctgatgaaaccagcccccgaat-gtccagctgcatctagccctcgctgctgacctgcagaataatgaactgataaaacggctgttgttctta-gctaccaagtgctggaggggtttgtcaaagca---gataacagataaact-taaaTTTTATAGATACAGTAGCAGTTATTTCTGCC--CTCCTGTTTATGCTTCTAGAAGAAGCTTTTGTCGCATGATAAGAC-ATGGAGATCTGTTTGTGGAAAGTCCAGAGAGACCCACGCCTGTGGCCCTCCCCCTTTTCCTTTTAGTTGATTTTGGATAATCCAGAATAGAAGCTCTGCCTGTGAAATTTTTGAGAAGTGTAGCA---GAACCGTCAGCTAAACAAAGTGAGAGTCTCTGAATAGCAAGAGAGAGATTAGCTGGCAGCAGGAATGTGCTCCACTCCTGGGAATAACTTCCTGACACCACTCTGCATATCACAGTGCCAATCCCTCGTCTTGATACTTAGCATGCACAGTCACACAGGCATACTCAGTAGTTATTGAAGAATGCCGATTTTCACCTGGTGAATGGATGTCGCTAAGTGGCTGAATAGATTCT-AGAGATGCAGTTAAGGGAAATGGCTGC-TAACCT------ATAACAAGGAAGTGGGTGGGGAATGGACT-TTGAAAGACTCTGGAGAAGCTTAAAAAAATAATGAGAAACAAGAGGAATAGACACACTCAAAGCAG
s HiC_scaffold_1 114770779 2616 - 233722169 AATTACAAGGACTCCATTTATTTAtgttatgactttttaaaaaaatgtttaagagaAATTGGCTTTAATTTCAGAATTGCATTTCCCCTCCCTCATCACAGCCCAGTTGTCCTCTGTGCCTATGAGCATTA--TTGGGCTAAATCCATTTTTAAG----ATGCAAAG-----CAGTTACTCTGAATCTCTGATCTCCAGGTATACTGTCTGATAAAAAAGGTGGTGGTATAAACAGATACggtaattatttatttctttaaatccaTTTAGACTGGGCT----------GTTAGTGA--------AGGGACTTTGCCTTAGAGCTGGATGAAGAGAGAAATAGGTTTGACTTCTTTAGCCCAATAGTTTCAGTGATgtgaaaatgcttttaatttaCAGGAGCAGTCTTACTGGGACAGAATCCTAGAGCTCAATTAGGAAGCAGTGAACCTCAACATCAACCATTCTTATACTGTAACAACGACGGATGCCATGTCTCTGGAAATCCCTGTTTATAACTTTGAAGTCCAGGAATCCAGCAGAAAGTAACTGTTCTGAGAAGGAACAATCTGGAACAGGATTGTTTCTTTAGCGTTGGGCCAGGGAGAAACATCATTTCATGACCCCTATCCTTTAGCCCCGTGTGACGAAATAAGTAGTGTAATTTGTTAGGTCCTGTCCCAACCCTTCTAGTTTAGCTGTATGAGCTGCATAAGTTAAGATCtctgtgtacatgtaccagctcctcacaaggaatataaacattatatactgtaaacatGGACCATAAAAACTCTAGTA----AAAACCCCTCAGTTTCTACATTTGTTA-ATGGGGATGAGATTGG-TATccaccttgcagaattgttcaagACTTAAATTGTTCCCAGTGGCTGAAAATAAGTGCTCAGGAAATGTTTGCTATTATTAATTGTCAGAGTTGTCATATT----CTTTGCCTACTTATCAGGAATGGGAGGACCAGCTCAATTTATTTAACTCAGTAAATGCCTCACCTTCTCCCATATTAGAAGTCTTTTGGAAAAGTCTTAACTACAGTTGTATAATTAATATCCAACAGAATTCATGTATAGGCTTGgactccaatttttaaacttaaatttat-----ttttaactgatatacaaaaacaaaaattgcacATATTTATGGGTTAGCATGTGATGTTTTGAGACatatataaattacataatgTTTACAGAGTAATGTATCCCTACAAAGTAAAAACTTCTGtcttctca---aacatttatcatttttttatggTGAAAGCCTTCAGAATTCTTTCCTGTAGCTTTTTGAAGTGCATAATACATTGTTGTTATCTATAGTCATC-TATTGTACAATA------------GCACACCAGAGCTTTTAGATCCT----AATCTCAGACTCCCATTTTTGAAGTGGGTTTGATTTTATAATTGGGGTAATGCTTCAATGCACACACTATATTCCTTTGGTGctaataaatctataaaaaggCTATATTTCTGTCCTGCACCTATAAATCTCTGGCAGAGAGTCTTCCTGGTAATGGGTTCCCCCTTATTTACCTTCCCAGGTAaatctcatttttcaaaaaagaaataatgtaaatgtTTAACATATACAATGGACTTTTAG----CAGTGGTTATCCC---TAGATCCTGCCTCCCACTCCTACATGTCTGGATAGTGTCCAC------TGACTCTGGGATTGGCCATGTGACTTGTTCAGACTGATGGGGCGTTAGCAAATTTGACAGAAGCAAAGGCTTGACATATACTTGCCAACTGGACTTGATGCTCTCTTATTGCTTAGGACTTTCCTGGCATCCTATGAAGAAACCCAAGCCAACCTTCTGGAGC-AGTGACCTCACCAACAGCCAG----------CACCAACCCCTACACATACTAG--AGGTCATCCTACCCTGCCCAACACCATCCAAAGTGCCAGATGTTTGCAGCCATGTGAGTGGCTGTGAGGAAACCAGCCCCAGAAGAGAACAGCTGAGTCCAGCCCCAGTTGCTGACCTGCAGAATAATGAACTAACAAAACGGTGGTTGTTTTTAAGTTACTAAGTGCTG-AGTGATTTGTTAAAGCAATAGATAACTgatagaatataaaatttatagatACAGT-GCTGTTAATTCATCCTCCTCTTGTCTGTGTTTCTAGCAAAGGCATTTACTGCATAATAAAAAGATGGAGATTCATTTGTGTCAAATGCAGA-----------CTGTG------CATTTACTCATTTAAGCTGATTTTGTATATATAAGAACAGAAGTGGGATCTGTGCAGTTTTCAAAACATGTAGCAACAGAATTTTCACCTGAGCAAAGTGAGAATTTCTGAATGGCAGGAGAGAGAGTTGCTGGCAGCAAGGACATGCTGTGCTTCTGGGAATAACTCACTGACATCATCCTGTGCTGGGCAGCACCAGTTCCTC-TCCTGACACTTAGCATGCATGACTACACAGGAATTTTCagcaatttttaaagaacatagaTTTTCATCTGGCAAATGGATGTAGCCAAGTGGTTGAATAAAATCTGAGGGACACAGCTGAAGAAGATGGCTGCATAACTTACGTTCATGGCAAGGAAGCAAATGGGGAAATAATTGTTCAAAGAGTTCAAAGGAATC---GAGGATattgaaaaacaa-agcaatagatATATTCAAAGCAG

a score=156845
s chr3           104319997 7050 + 160039680 [encoded data, 7527 characters]
s HiC_scaffold_1 114778270 6281 - 233722169 [encoded data, 7527 characters]

a score=92042
s chr3           104332386 2985 + 160039680 AGAAATGAAGTCTTAAACTTTAGGGATTCAAACTTCATACCAAAATATTTGAAGATAAAAATCATCTAACGACCACATGTGCTTCAAAGCCAAGTGAGCAGGTATAGGGC-AAGCTGTGACCTGTT-AGGTTTAGCCGTGAGCAGATGGGTGAG---GTGATTATTTCACATCTATTTTTTGTATGTTTTCAAATTTTTCCATAATAAAAATTTTGGTTTATTTTAATAAG--AGAAAATTTAAAGAGAAGGCCGAGTCTCCACGGAAACCCTGCCAAAATATTTATCTGCTCATCAATAAAGCATGAGGCTTGTATCTCAATTCCCATGCACCAGGCACTACACTGGGCTTTAAGGATGGGAC-GCAGAGAG-CTTTACTGCTATGCAGCAATCAAAGGCTGGCGGGAACAGAGAAACTGTAAGGATGGGTAAGTGTGGGTGGAGCTGGGAAGTGCTAG-AAGGATGGAGCAGCCCTGGAGGAGCTGCCTGTGCTCTGCACCCTTAGAACAGTGCCCTGAGGAGTTGTCAAAGGGCATTCTGCAGCTCCAGCCTG---CAGGGG-----AGAGGCCCTTAAACCTGAACTAGAGGCCCCAA-CAGAGCTGAATGTCACCTCTTTTCACATCAGTACTTTTCATTTTGGATCTTGTTCGAGCTCAAATTGTATTACGGTCTTGTG---AGCTGGCTCTGCTGTCACCTTCAGGGAC--------ACGGGGCTAATGATCTATACTGAAGTCTTCCAGCTCACGAGACAGGGTGATATGAGCTCAGATTCAATCT-GCCCATCACCAACTGCCACCCCTTCCAAGGTCCTGCAGCCTTGTAGCTTTGCCTCCATTATTCAGATACTGATTCAGAGGGAAATTGTTAAATGAGCCCTTTAGAAGGAAGGAAAGTCTCTTTGTCTTCTAACTTAGTGAGAT----------------CACTGAT---------------------------------------CTGAGGTGAACAA--GCGGTTCCATGCATACATAGGTATATGGATGCACGTAGTCCTATAGATGTATATATAAAT------TTGTTTTATGGCTACCGCCTAATCAGTTGTAATAATGTAAAGGATGCCACGTGGTTAGTAGTATTAAGGCCATAAATTGCATCTCGCAGGATGTGGTTTCTCCACAAAGCCACTTGGCAAGACCTGCT-TGATTAACGTCACACCAGGGAGGCATGACAGA--------------------------------GGACACAGGGACACCGGTGACAGCAGCGCCCACAGCAGTTGGTCTTAGA-----GAACTTTCAGCCTTTGTGACTACAGAACACTGCTTGATTTACTCATTTTAAGA-AAACAAAACCAAGAGGCCACCCAACCCTCGAGGAAGCATTAGCCGCTGTTCTGGATATTGCTGTTGACATGCATAATTTATCACTGCTGCGTCCCATTATTGCTAAATAGAGAATCGATAGATTAAAACACAGAAGACCTGCAGAAATAACAATCACCAGAGGAAGGTAGATCTTCTGCTGAGAT-------GATGCCTGGCCAGTGGAGCAGCGCATCCGTTTCCGGCCTCGCCATTTGTCCATATTGATTCTGCCTATGAGAAAAGGGAGAGCTACTTTGCCTTGACCAAGACTGATTTAGCCTGTCTCTCAATGCAATTTGCAGC-TTGGACCTCATTTGGATCCTTACCTCCAGAGTCTTTAGTCTGATAGAAGAAACTATAAAGGAATTAGGTTTTTGTCTCGGAAGCCTGCCTATAATTACTTTTAGTATCAAATGGCTCCAAAAGCCAGAACATAATGATTTTAAGGGATATGAAACTTAGCCACAGGTGACCGTCTTGAAGAGTATATTCCACTGGTTATGCTTGGAAACAGAGGAAGGAGGGTCTATGGAGGGATGGGTAAGAGGAGGCAAA-GGCC-------------CCTTGAGCCTCATGTGTGTTCCAGGAGTTGTTCATTTATTACATCCGGATG--------------TCTTCCAGTTAAGAAAGACCAGTGTTTAGGAAATAGCTTAATTATTCAAGCTGTCTTTTATTTTGATAACAAGGAAAAAACAACTCATTCTACCCACGTCATAATAGTTGGAATATAAAAAAAATATTTTCCCAATATAATTCAACAAACGCCCGACAAACTTCTGTGGAACACTATTACTAGGCTTTAGGG-ATGTGCGAGCACCCATCAGATATTTCCTGGGTG-------TCTG-TGGGAAGTGGGCTCAGTACTTGTGGTTAagac--tcacttgctccatagagtgtacagcctggtaagggagatggtcagtgaacaaacaaccccacagtgaagaaattcaccaagattctgggaccc----------agcgggtgctgtgagcaagta-tgacgggagtctggtctgctcacctgaggaagacgtctctcgagtgagagagcat----------------cagtaggagctagcttaagtgaagaaggggtacacagagaggtgaaggatagccatcgtctactgtcccaaagctcctaagagggctgggagctggaacggagcatgagctgttctgaaccctg-actggtggccagcgtgctctagcaggaaagcagagagctgtagaaTGGCCAGTGGCAGGAGGATGTCCTTCTGAGCTAACCC-TGCCTGCAGAGCACAGCATAAGCAAACAAGGCTAGGCC-----ACGAGCACAGAGAAATGAGTCTCCTTGGCGTGCCTGGCCTCGGGCCAGCAATGTCCAATGAACACAACATAGTTTGA----CATCTTTGCCATTATTCCGTCTCTTGCATAAGTACTTTAGTTTTTAA--TCTCTTTCGAAAAATGAAAATGAGGACTTGGCAAAGATGCAAAAGAAATCTACATTTTTTTTCTCCAAAAAAATC----TTTTTAGCTCAAATATAGC-AAAATATGCCACAATGAACATTACAaaacaaacaaacaaaaaaaaaacaaaagaacaaaAAGCACGATGGTTTTATGAAGTGTAACTGAAAGCAGGTCGAACAGGTGACTGGATGTGTCTCATGCAATCAGTCAACAGctgtttactgggcattgatagtacacgcttagcatcca-------gcagcaagcgttctggtccacagggagtttgcagtccagt
s HiC_scaffold_1 114788230 3084 - 233722169 aaaaactgagTCCTTATCTTTAA------AAGATTCAAACCAAAATATTTACAGATGAAG-TGATCTGATATATGTAAATGCTTCAAAACAATGTGATCAGGGATGAGGCTGAGGAGTGGATTGTTTAGGCGTAGCCAGAGGTGGATGTGTAAATTAGTGTATAttgca-atatttattttgtgtgtgttcaaaattttccat----------------tttttaagtaaggaaaaaaatttcaagtgaaGGCTGAATCTTTAAGAAAACTTTATCAAAGCATTTGCTTGCTTGTGGGAAAAGCCTGTGGCTTCTAGCTGAGTGCTTGTG-ACCAGGTCCTGTAGTAGGCTTTACACGTAGGACCATAAAGAGGCTGCAC--CTTCTCAGGGCTCAAAggctagagaaaa---agaaattgtaagaATGAAGAAGTGCAGTTGGCGCTGGTAAGTGCTAATGAGGATTCCACAATAGTGGAGGAACTGAGTGTTCTCAGCACCAGGGAAGTGGTGCCCT-CGTAGACGC--AAGGACCTGCTGCTGGCTATGTCTGTTACAGTGGGAAAGAGAGGTCTTGTCTTCTGAATTTG--TCCCTAAGCAGAACTCAACAGCCCCTGTTTTCACACCAAAGCTTTTCATTTAGGATCC----------CAAGTTGTATGAAATTCTTGGGGTCAGCTGACTCTGCTGTCACCTTTAGGGAACACTCAAAACAAGGCTATCAATGTTGTCTgaagtctttcctttcctgtaatAAGATGGT-TGAGCTCAGATTCAATCTCTCTCACCACCAACCACCACCACCGC-AAGGTCCTTGAACCTTTCAGCTTTGGCCCCATTTCTCAGATACTGAATCAGAAGAAAATGGCTAAATGAGCCTTTTGGAAAGCATGGAA----TTTGATCGTATGtcttagagaaatgaaaaaaacataacagtattGATGAAGGCAGTGGTTCATCTTACCTTCATGAAATATAAACTCAAAGGAGAaaagttgtgtgtgtatgtatacatgtatgtatgtatatatata-tagtatgtgtgtatatatgcatagGGAATTACATTATAGTTACTGCATAATCAGTTGCAATAATATAAAGGACATCACATGGTTGACAATATTAAGGCCATAACTTACATTTCACAGCATGTGGCTTCTCCACAAAGGCCCTTGACAAGTCATACTATGATTGATATCACCGTAGGAAGGCATGATAGAACGAGATGGGTAAGGAGAAGTGGCAGTAAGTGGGGCACAGAGACAGTGATAATAGCAGTTTCTACAGCACTTGGCCTGAGACACCAGGTCCCCCAAACTTCACGACTGGTAAACAACACCTGCttcacttatttaaaaacaaacaaaa--aattagccCTCCAACACTTTAAAAAGCGATAACCTCTGTCCTGGATGTTGCTGTTGACATATATTATTTATCATTGCCATGTTGCATTATTACTA----GAAAGTCAATAgattaaaacataaaagacatgTGGAAATAACAACCACCAAATAAAGGTAAATTTTCGAGTAGGACTTACCACAATGCCTGGTCCCCAGAGCAAAGCATTTGTTGCTAGCCTTACCATTTGTTACTATTGATTCTGCTTGTGA-AAAAGAAAGAGCTTTGCTGCCTTGACGAAGAGAAATTTCTCCTCTAGCACAATACAATTTGCAACCTTCAGCCTCATTTGAATCCTTACCTGTAGAGTGTTTATTCTGACAGAAGAAACCATAAAGGAATTAGGGTTTTGTCTCAGAAGTCTGCTTATAATTACTTTTGGTATCAAATGGCTCCAGAAACTGGAACATAATGATTTTAAAGGATACGAAACTCGACCATAGATAATAGGTTTGAATACAGTGTACAATAGGCAATGCCTAGAAGCAGAGAAAGGA-TGTATGTGATGGTACATATATAGAAGGACAAATGGCCTCCCTGTGGAGATCCTTGGGCTTTGTATGTTACCAAGGAGTTGCTCATTTATTATCTCCTGGTGGCTTAATAGGCTGCTCTTCCCATTAGAAAGGATCATTCTTTGGGAAATGGCTTAATTATCCaagctgtcttttattttgataataagaaaaaaacaattcattcTAAGCAAGTCATAATTGCT-cagtttaaagaaaacattttcccaaTATAATTCAACAAACGCCCGTATAGCTTCTGTCAAATATCACCAGTAAGCACTAGGGAATGCATGTTCACTCATCGGACACTTACTGAGTGAACAGCCTTTGTTAGGAAGAGCACTTGGTGCTTCTGCATAAGACAATCCCTTCCTCC-CAGAACCTG-AGCCTGTTAAGGGAGACGAT-GTTGAACAATTCATTACACAGTCAAGCAACTCACT--GACACTGGAAACTGAAGGAGATGGGCAGGCACTTTGAGAACGTATTAATGAGGGTTGGGTCCAAGCCCTTGAGGAAGACTTCCCTGGGAAAGGAGAATTTAGATGAGAACAAAGGACAATAGGTGTCAGC-TAAGCAAGGGACAGGTGTGC-TAGAGGTGAAAGATAG--ATGGTTTTTCTCTCTAATCTTCCTAAGGGAACTGAGAGCCCAAAATGTGAATGAGAAGT--TGGGTCCTATATAGATTGCCAGT-TGCTCCAGT------GAAGAGAATTGT-GCATGGCTTTGAGCAGGG-----------TGAGCTTTCCTATGCTTGAATTTGAAAGCAAACCTGTGCAAGGCAATGTCATGGAACAAGAGCAAGAGAATTACTCTTCATGGCTTGTCTGCTACGATACTGTTGATGCGCAGTAAACAGATGATAATATGAACACCACCCTTGTTGCTATTTCCTCTCTTGGATAAGTACTTCAATTTTTAATCtctcttttgaaagatgaaaattagGACTTGGCAAAGATGCAACAGA----------TTTTAgatctgaaaatttttaaattcttagttCATGTGCAGTGAAAATATGCCACGATGAACATTATGGGA----------------------------AAAAATCATGATGGTTTTATAAAGTGTGGCTGAAAGTAAGCC-AATGGGTGAACTGAT-TCTATAAACTTTTCATTCCCCAGCTATTTATTGAGCACCAGCA--ACATGCCTGGCATACAGAGTGAGGCAGACAAGGTGCTTGTCCTCATAGAGATTGCATTCTAGT

a score=49024
s chr3           104336353 2994 + 160039680 TATGgcatcctccgcagaggagaggcaagtgctcaggcctgcaggctggaacaagcttgacaggtctcaggaaaa--acagggcggctggctcctggagagctgccagccaatggtgggcggcaggagcaaaactggagcct---ccagggtctgctcaggtggctgttgctggaaggatgctagcttccaggctacatggaagctgtgggagggctctccaggcagggaaacgctt-ccatctgattgatgtttg-aaaggCTGTTTCAGAGACAGTGAGTTGCATTGCTAGCTTATTGCTGTAATGACTGGTGCATTTCCCATCTTGT-GAGACCCTGGATGAACAC------AGTGACTGGCTTGAGCCCGCAAACCTTGAGAAGGGAAGAGGTGGGAAAGATGAGGAGAGTCCTCCTCGACT-AGGTCTGGA-------GTTGGGGAGGCAGAGCCGTGAGGCTAGCCCTTCCTTCTCCTCAGTGGATTGAGAAGCAGA-----------AGAACAAGGTGTGGCTG------------AGCGGGGATTTGGAACAACTTCTATGGAATCAAGGAG-GAATTGCCTGAG----------------------GGTACCCTGCTGGG--AGTAGAGGGGGGAGACCCTC----------------------CCCTAGACTGCAGAACCCACTCTTTACCCTTCCCT--------TCCCATCTTGAATCCACT-------------------CTCCTTCCTGCTCC--------------CCTTAC-------------------------GAATCTCAGCCCAGATTTTAACCACCAAATGCCCCGTGGTGC---------AGCCCTTTGCAGATGTCTCTTCTCTCCCAGG---CATCTCTGAATGATTGGCACTTGCTTCATCGGCTCATTAGTATTCTCATCACTCGCTTCCTCCCTAGTCTCTTGCTATATGGTTTTT-----ATTACGTTAGTGAAATTTCCCTTAAAAGTCATCCATGATTTCTACTCTATTCTTGTTGTCATAGACACTG-gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAGAGAGGGGGGGGGCGTGGGGGGGCTTATAAAAGTTCCTTCCTTGCTTTGCTCTAGCCTCTCATTTAAAACCCTTGTTCTGAATTTGCTG------GACATGGGCCCCCACAGCTCTCTTCCCTTCCCTCTCTAATTCCCTTCTCTCTCTGATCACCGTACACTTGTCTCCTCTGCACAGTTCTTTCTCCTTCCCTTAGTCACCTGTCAATCATACCACCTGAAACTCAGCTCCTGCTCATTGCTTGGCTCCGTCCTCAGTGAACT----TACAGGTCTGACCACCAGATAACCCTCAACTGAACACGACCTACCAGCTTAACGGCTAGCTGTTGGC-TTGTAACGTCTAAATCCCATCTGTTTCCCAAACTCCTGTGTCTCGACTC--TTGTCATACTTGCAACCTA---TCACCATGCTCCGAATGAAGCAAAATGTTTT--CTTGCAAAAATCCCTTTC-----------------CCATCAATGTCAGCACTTTTGAATCTACCACATGTCTAACTGGAGAGCTAAGCTTTGATGTCTCCTGCCCTCATCCTCCACACAT--TGACCTATTACTCTTGTCCTCCATGGACAAGTTAGATCCGGAG------CTTCAGTCCTAGTAATTCATCTACT------------------CCAGACACAGACTTTGAG--TGACCTTCCTCCGATGACTGGAAT------TCTAATACCCTCAGCTAGAATCTTC---------------CAACAAATATTTGCTGAGGAATTATTGCATATAGTGGGGATAGGGTATTAGACAATGATGGCAAAGCTCTGGCTCTCACACAGT------------------------CAATATGTAAATAAGTGAAATCACACTGAATAGTGACAACTGGCAGACATGACTTGTGGTGACAGATAGGAGGTGACGGTGGAGGGGCCGCAGTGACGTTCTATCAGATGAGTGCTGTGGAA-ATCCTTTCTGAGAAAGTG-------AGTCTGGATTTGAATGAACAGAAGAGAACAATTGTGTGGATCTCCAGCTccctccccctccccctccccctccccccctccccctcccccctcccccgcacccccctcccGCCACACggacaaccagtgtgaaggtcctcatgtgggaataaacctggctttatttgataatcaacaacaacaataacaatgacaaaggctgatgtg--tgaac-cagtgagctaa---aagagctatagaagatgggtgtggagggcttgcta-ggccagacc-acgtgggcttctccagcaagactgtg---ccggagctttactctctgcatcaggcagaagccacaggccaggttg---------------aaggaagtggatatgctgtgttttgcactttcataagctcactctcactgcttaatgtgt-gagaatggatcgtgtggctcttgagaagacataagaagagcaattaggagtccagctgagagctaacggcggcctggagtgcgtgagggtagtatagagggagacaagtggacagtcatatgtgtgat-tacctatgaggccgacacgatagtgtttgagaatggattggatatgggcataaaggaaagaggaggaatcgagaatgactcctaggttgtggctcaagtggtgattagctagagatgtaatctcctgagatggggaagcctggggtgggaAAGCCT----AGTGTTTAGAGAGTATTCTTCTACACACCCTTAATGATGGG--------------------TTCTCCTTAC---AAGGACAACCTA----------------------------------------------------CCAGTCT-------------------------------------------------------------------------ACTGAGATCAGAAAGGTCTTATAATGAGTCCTAAA---------CTGCTTCTCTGAAA--ATTTGACCACTTACTC-----CAAAG------------CCCTCCTCTA-------------TCCCTTACA------AGGGAGACTTACGTTCTTCTGGATGTTCTCTCCTGTGATTAATTTACTCTTTTTTGTTATTGTTGTTGTTGTTATTTCTGGATCATGGCAGATTTAAACTGGTTTTCCTTCCGCCTCATACCAGCCTATCATTACAAACAGCCAGATCCATCTTCCTAATGCTCTCCTCATTAATGACAGAGGGCAAGGCTCTGTG---CTTTATCTAATAGGACACTAAAGTTAAGACTCTTTGGTCTCAGTTTT-CTAAGGC-AGATAACAGGGGA--ATACTTTTTAAAAACACTACTTTGCAAGTATTTTA-----AGTAGCCAAA-ATATTCTTAAGTTTCCAAGAGGATCCCACATGTATAA
s HiC_scaffold_1 114791661 3248 - 233722169 TGTCGGATACTCAGCAGAGGTAGTGTCAGTGCTCAGGCCTTCAAGCTGGAACAAACTGGACGTG-----GGAAGAGAACAGGGATG-TGGCTGTGCGAGAG---------AATAGGAAG-GTCTGAGGTACACTGGGGGCCTAAACCAGG--CCAGACAGGGGGTCACAGTCAGGAAG----CAGCTTGCTATCTCCATGAAAA-TGTGGGAGGGTTTTT--GGTAGGAAAAATTATACCATCTGATTCATATTTGTAAAGGCTGTTCTtttgtatataagatgaattttaa----ataaatgtaataact----cATACTCTATCTTGCCAAGAGGTTGAATAGCCTCTTAAGAGGTAACAGGCATAAATGCTGGTGCCC-AAGGAGGGAA-ATGTGGGAGGGAGGCAAACCTGAcctgtcagctgaggccctgaaGCCTGTGTGCGGGGAGCAGGAGGGGGCACTTAAGCCTTCTTTATCCTCATTGTGTTGAGAAGCAGAGTCATATGTGGAGAGTAAGGGGTGGCTGCCTGAGGTGGGAAGAGGAGATTTGGAACATTTTTctaggagaagaggagagagctGCCTTGGAACAAGAACCAAAAAGGATTCTGACAGCCTGAAGGGCCAGGTCTGGTGGGAACCCTTCTTCTCCTTGAAGGTAACTGCCTCACTTGAGTGTGGACCctatattttgccttttcttgAAGTTTCTCCCATTCTAATCTCACTGGCCTTTAATGAAcagattctttttctctctcaagatgaagccagggcctcaccaGGTTAAGCAAAtgtcctaccactgagctacatcccaacttTAAACCCTCAAACACCCCATGATACCATCATTCCAGCCATTTTCCAGTTTCTCTTCTTCTCCTGTATCTATATTTAAATGATTGGCGCTTTCTTCATCTACTTACCCATTTTCTCACCATTCATTTCTACTTTAATCTCTTGAGATATGATTTTTATGCCATTGGATTAGTGAAATTTCCC-TGAAATTCACCCGTGACTTCTGCACTGTCTTTGCTGTGTTAAattctgcgtgtgtgtgtgtgcgtgtacatACGTGTCCAAGTTTAA---------------------CCTGGGAAAGTGTCTTCCTTATTTTGCCTTCCCTTCTTGTTTTAAACACTTGTTCTAAATTTGCTGGACCCTGACGCTGGCTCCCAGgactccttctcctcc----------tgccttcTTTGTCTG-----------CTTG----------ACAGCACTCTCTCTTCCC---AGTCTCTTGTCATTTGTA----TTGAGAATCAGCTCTTGCTCATGGCTTGGCTCAGG-CTCAGGGTACTTCTCTACTTTCATTGTCATCAACTATTTCTAAACC-AACGCATTCTCCAAGCTTAATGATCAATGCTTTGCTTTATAATTCCCAAGTCACACTGTTAGCCCAAATTTCTTTCTCCAAACTCTGTTGTCATATTTCCAAACTACACTCAGCATGTCCAAAAACTggcttaatttttttgtgtgtgaaaatcACTTTCAGAAGGTTTTCAAACTTCTTCCAATTTC--CCTTCTTGAATCTATCATATTTGCAGTTGTGGAGGCAATTTTTACCCTCCTCTGCTCTCATCCTTCATACGTCATGTCTCATCACTTTTGTCTTCCAAGTACATCTCAGATGCAGTGCAGTTTCTTCATTCCTATTAATTCATTCACCAAGTGCGTGGATTTTTAATTAAACTCAGAGGTTTAGCCTCACTTTACTCTTACGACTGGAATTTTCTCTCTGATGTGCCTGGCCAGGATCACCAATCACTCatttactcagtaaatatttagtgAGTACCTGTTATGTGTGCTGGAGACATAGGCCTGGACAAAGAAGGCAAAATTCTTCTTCTTATGCAGTATATGTTTTACTCATGCAGAccaataatacataaataaa-gaaaTCATTTTCCATAGCG--------------------GTGGAGATAGAATGAA------------------------ACTCTCCACTCAGTGAGTGATTAGAAAGGTCCTCTACAAGAAAGTGACATTCCagtttggttccagatgaacagAAGGAGAAAATCATGCTAAACTCCAG--------------------------------------------------GGACAACCC-----AGGTTGGGACACCTAGTGTGAAGGGCCCTGTGTGGGAATGATCCTGGCTTTGTTGTAGGAGCCCAAA----------------AAAGGTTGATGTGAATGAATGCAGTGGAATAACAGGAGAACTGCA-AAGGTGTGTCTAGAGAGACAGCTGCAGCCAGACCAAAGAGGGCTTTGTAGGGTAGACTGAAAACTTAGAGCTTTAGTTTAAGT-TCA---AGAAGCCATAGGGGAGGGAGAGTAGACTTTTAAGCAAGGCAGT-GACAGGATTTGCTTTACA-TTTCATGAGATCACTCTAGCTACTTCGTGCATGGAGAAGGGATTGTGCAGTCCCTGAGGAGACAC----AGAACAATTAGGGGTCCAGCTGAGAGAGAATGGTGGCCTGGGATGGGTGAGGGCAGT-----GACAAACGAGTAGACAAACACATTGTTAATATACTTTACAGACAGAAGTACTAGAGTTTGTTGATGGGTTGGATACAGGgataaagggaa-agaaggaatc-AGGACGACTTTCAGGTTTTGGCTCGCG------------------------TTCTGAGATGGGGAAGTCGgtggtgggagaggctgtggaaaGACAATAGAGTTTCTACATGTACATTTCTAATGATGGAACATCTAATgatgtatttccttttcttcactgTAAGAATAGGCTATCCTGAAACTGATATtggcgggggctggggatttagctcagcggcataagtgcctgccttgcaagcaggcagtcgtgagttcgatccctggtaccgataaaaaacgaaaaagacaaaaaaaaaaaaaaagaaactgatattGGGAAAGTCTTGTGTTGAACCCCAAATGTGTTTCTCTGCATCTCTCACATCATTTTAGTGCTTCCTTTTCAACAAAGTGAAttgtatttccttttcctacatgacaacatttttctttacctgtgttaagaaaaactattttcacctaagttttctcttttctgataaATTTACTCAAT-------TTGTTTCTG-----ATTTCTAGATCATGGCAGATCCAAAATGGTTTTCCT------TCATAGCTGTGCATCACTGCAAACAATTAGATCTGTCTTTCTAATGTGCCAGCCATTAATCACTAAAGGCTAGATACTGGGAACTCGTGTCCAACAGGATACTAAAATT-AGACTCTTCTGTCTCAGTTTTGCTAAGGTAAGAAGACAATGGATGTTACATTGT-AAAACATGACCATGCAAAAATTTCAGTGTCAGCAGCCAAGCAAATTCTTAAACTTTCAAGAAGATCCC-CTTGTATAA

a score=29608
s chr3           104340405 2282 + 160039680 ccagaactaagttagctttaaaacaggtcaccaaattgtgataccctc-----ttagaacagcattcatcaaataagcacttcctgctccctttagct---------gccacccttggtcacagaaaagtcaaaactcacagtctggtggagggaagaaaagaggaagaggaggccacagtaagagagaagccacaagcaccttctccatgcccagcccccatcctgagaaaacactagacag--gacgagattaggctctgacattttaattctgaccattttacgctggtcttgaacaatattaattactgaattaattaattactgagcagaaagagactttccccattttaaaaggatggtaaaagtttaaaataaagtctcttc----ttgataccaattcaggagtcc-ccttgtgcagctttctggGAGCA-ACAGATTTAAAAAGCCTCCT-----TAAGTTGTCCCCTTTATGTACTTCCCTCCAGGCCTCTGCCATGCCCTTGAGATTG--CCCACACCCCTAAGTACAGAGTTTGATGCTGTCCCTTACTCAAGCTCATCTCTATTTT-CATTAGAATCTTTCTCA-GTTCCAACAGAATATCTGACTTCCATCAGGCAGTCCCCTGTGCTTTGTAATAACAACAACGATTCA---GCCA-------------ACATTATAcagtcaaccctctgtattcatgagttccacatctgtggcttcaaccaactgagaattggatacgtggaaaaaaaa--------aaatctcatctgcactgagcactcacggcctctctccactgtcctgattccctaaacaagagagtccagcaactgtttgtgcagcgtttac-ttgtattctgcagtacaagtcatcttgaggtggttttaatctgatgggtagggtg-gcatggagcacacaatggcaact-ccaccaccatcccctcccagggacttcagcatcAGCA-------------------GTCATGGGGTC---AATCCT-----CTGCAGAT-----ACAG-GAGGAGGCTGTAtcagttctcacaaaagccttctgagatagatgttattattacctccctggctgcacagctgaaaacgatgaaacCAGCTGACCAAGGAGGCTGCGATGGAGCCCAGGAAGCCTA---------------------------AAGGGAAGTAGTTCCTTCC-----CTTGCACCTTACTAG-----GACTTGCTACTCCAGCCTTCCCTGTCTCCCTGATTC-------TGCTACCCCAGATATCTTCCAAATCCCAACTCAAACCCC---------------------------------------------------------------------------TCCTC--------------------------CGCGGAGTTTTCCCTAATTACTTTACAGTTGTCTTTTTTTCTCTGAGCTGCCTAAACATTTCATTTGTCCCAGAACTTTAAAACTTGAGTGCGTGCTGTGCATTTCTG--TTGTCTTGTGAGAGCTC------CAAGCA--------TTCCTTCCAGAGAGAGACTGGCTTTCCATACTTTCTTGCATTTGTCACGGCAGTGGCTCTCAAGCCAGAAAgcgggggcggggggggggggcgggggggcTCACAAACTAAGAAACACATACATGGCACTTAAATAATAGAGAAGGTGTTTGACCTCACTGTCATAAGAGGTATGGGAagatagataggtagatagatagatagatagatagatagatagatagatagataggtgacagattaatagaagataTATTGTAAGCATATAGAGAAAAGATCAATTACAAATGACAGATTAATTCTATTATtaaattgatgatagacaaataaaaggtagaagatacaagtagatagataactgataaatgatagataagaagataagtgataagtatgtagaaacagagattgatatagataggtagatagacagacagacagactgactaatagaATCTCTTTGTGTtactatttgttacctgtcagataagcaaacatccaaacacagggc--cacatttgg---acaaagctgtatgggaag-gaacctttctcatgctgccgatggggatgt-aaatgatgcagcccttacagagaaaaatttggcagcatctaacggtattacacatacattctttttggcccagtaatctcacttttgggaatccatcctgaagatgcactggcaagaatcccaagtgctgcatgttcaaagctattc-tcgctgtgctatttatgaaag--caagtctgaagaaacc-----------------cagtgtcaatcaatagaggcctggttagatcactgcagagcagccatatcaaaggggcctgggcaggaatgaggggcgatcactcctgacaggaatgaggggcgattactcctggctgtcctgaacgctcttcaggatctgttgctgagtggac---aaagcaaagtgaaggaaaacgcaaacggcagacatcatttgtgcaagaat
s HiC_scaffold_1 114794983 2122 - 233722169 CCACGAGTGACTCAGTTTTAAAA---GTCCCCACATTGTGAAGCCCCCACTTATTAGAAAAGCAGCAGCTACATAAGCACTTTCTGCCTCCTTTACCTTTCACTCTGGCCACCTTCAGCAATGGGGAA-TGAGAAGTCATAGTC----------ACCAGAAGGATAAGAAGAAACTA-ATTTAGAAGGTAGC----ATCATCTTTTT--------GCCACCTGGAGGGGGATCTACTGGAAAATAGATGAGGCTTAACTTTGAAACTTTTATTAC--------TACATTGGTCCTGTA----------TATTAAGTTAA--AACCA-TGATCAGGAGAAGA--------ACTGTAGAGAGACAGTAGAAATCCAAA-----GTCCCTTTGTGATTGATCACATTTCAAGGGTCTGCCTCTTTCAACATTCTAGTAATACACAGATGAAAGAAGTTTCACATTGCTATGATGTGTC-TTTAAGAgctcccttctctgtctctgtcttgctcAT-AGGTTGAATCTAAACCCCTAAGCCTGGAATTTGATGTCCCCTGTTACCTGAGCTCATCTATATTTTTCAACCAAAGCTCCCACAAGTCCTAATAGAACATTTCACTTCTATCAGGTAATCCTCTGGGCTTTGTAATAACAGCTAATATTCATCGGCCATTTATTGTGCTACACATTATGCAGTCAGCTGTCTGTATCCATGAGTTCTCcatccatggattcaaccaactgTGAATTG-----------AAAATATCTTTGTTAAATTGCATCCGTACTGAACACGTGGGGGCTTTCCCCA-tgtcattattctctaaacaataCAGT-GAAAAACTATTTATGTAACAGTTACATTGTATT-----AGATAAGTAAACTAAAGATGATTTAAAGTTTA-GGATAGGATGTGCAT----------ATGTTAAATGCAAATACTATTTCACAAAAGAGACTTGAGTATCAGCAAATTTTGGCATCCTTGGTGGCCTTGGGGGTGGAAATTCTAGGACCTGTAGATTGCTAACAATGACTTCACTATATGA-TCCTCCCAAAAATCCTTTGATGTAaatattattattccc------attttacaaatgaaaaatcagatatcAGCTAATAAAAGACACTGAATT---TCCCAGGAGATCTAACTCTAGAGTCTACAATCCTGACAGCTAGGCAAACCACTTTCCTCCCTATTCTCATATATTTTTGGTTATTAACCTACTGCTGGTATATTCCCTGCCTTCCTGTTTTGAGTTTATGCCATCCCAGATAGCTTTCAAATCCTAACTTAAACTCCAAAATCTatgaggagggctggggatatagctcagcagcacagcacctgcctggaaagtacaaggtcatgagttgagcctcagtacaaaaataaaaaaaaaaaattgtgaggaACGTTCCCTA---ACTTTAGAGTTATC---TAGTCTCTGAATTCCTAAAATAATT---------AGGAACTTCCAAACTTGGACTTGTGCCATCTGTTTCTGCATTGTTTTGGATGTGTTATTTGGGTTAGCACCTGTTGGTTTCTTTCCGGGAGGAGCCTGTGGTCCATCTCTTCTTGTGTCCACCATggcaatatttttca------------------------------------------aaatt-----tcacacACA-----------------------------------------------------GAGTATAAACAGATAGCTCACTATATA-ATAACAAAGTAAAT-GATGCTTAAATGGGTGA-----------------------------------------------AAAAGTGCTGGCCTCATTATA-------------------------------------------------------------------------AGGATATGTGA-----------------------------------------------------------------AGTCTCATAGAGTTACTATTTCTCACTTGTCAGATAGGCAAAAACCCAAAAGTGTGACAACACGTTCTGATCACAAAGCTGCAGGAAAAATGGACCACTTCAACAGTGatgaagagaaagcaaaatgatGCCTCTCTTACAACAGGGAATTTGGCACCATCTACCAAAATTATATGTACATTCTTTTCCACACAGTAATCTCACTTTTGGGAATCTATCC-AAAAATACACTTGCCA-AATCCAAAACACTGTATGTTCAAAGCTATTCTTTGCAGTACTGTTTATAAAAGGAAAagtctggaaaaaacaaaaacaaaaacaaaaacagtgccAATTAGTAGAGGCCCGGTTAAATAACTATGGTAAATCCATGTT-AAGTGTCCTATGTGGGAATAAAGAAGGATCTTTACAGA--------------------------CTGTCCTGGATGATGTCCAGGACTTATTGTTAAGTGAACAAAAAAATAAggtgaagaaaaatgt---------atattatcTGTGCAAGAAT

a score=85097
s chr3           104347537 3480 + 160039680 TTCCTGGACCGAGTGTATTTTTCAGTAACTACGTAGTTTATAAGA-AAATATCTTCTCTGTAGAA-------CCACAGTAAGCTCGTGGAGAACGTAGGAACTAAAAGCCACC-TGACTCAgagccagtcaacgatcaagtcggctgctcaaaccattaggtaaaaagttgggggagagtttggcg--tgacaggtcaggctcacagcacttgaacccactgacgaatttcac-taaaagtggaacggctggacataatgttcttccacctgtggaatattcttgccaagaag---aaatattgaatgtaatcaagcctctaacctcagcttacaggaaatgagcttg---ggggagcatgttgaacacggcaccaggaggacaccgtgagtcaaagccggagtgtgggaaattctgcagcagaagcgatacagtttattcaataaataa-tggtcctaaaagaacaaagagaaccattgttaattaacagagacataCCAAAtgtggtgggtaagtttgatggtggacttgacaggacatagaaccatctaggaggcatagctttgggtgtaaccggaagggggtttccagagcggtttaactgacttggggagacctaccctgaacacaggcaccaccattctgtgTAGAGGAGGTTTTCTGTCTTTGCTTCTTGGCTACTGGCACGATGTTACTATAACTGTCTCATCTCCTGTGTCCATGTCTTCCCTACCATAAAAGACTGACTATAGCCTTCTGTCCAGCATTTTGTCATAACAGTAAGAAATCAGTGACCCAACCAAACACAAGACATGGATCCTTTCAGACATTCCAATTTGAGCGAGTCAAACACACCAAAGACATTTCAGAGatgctgcagacacctggaaatttgatcctataaattcatagagtcggatgtgatggcacgtccccctaatctcagcag-ctgtgaggtggaagaaagagagtctggagttcaaggccatcctctgccacacagtgagtttggaacgaggctggatttcatgaTAAATATAATAAAGAAGATAAAGAAAATATAGGTAATGTTATGGGTAATGATGGCACTGGGCTTATATTACAACAACTAAAAGGCTATATGCTAAAGGAATATAGAAGGAGAGATGGGTGAGAGGAGACTGCATTTGGA--TCCCTTTAAAATATTATA--ATCCTTCCTACACACACCAGAAAAACTCAAGTTGGGTAGAATTAAAGT-GAAGGATGAGAATTCTCTCAGTTACTGGACCTTAATAATGGGCACATTAGGTCTGCTAGGCGATTTTTTTCCTAAGGTCACACGTGTTTCAACAGATCTGCAATAAACAGtaaaataattaaataatttttttCAACAATTGTCCCAGGATTGTGAGCACCAAGGAGGTTTTGACTGCATATTGGGGTTCTTTTAAGACAAGCAGAA----GATGCTGGCTGAGGTGACCCAGGAGCAGCGGAGAGACAGCTGCAGTTGA-CCTTGCTGTATGGGTTGGAACCAAGCCTTTCTGGCttctcagccttccaatgcttcaggcctttaataccgttcctcatgttgtggtgaccctcccccctaccaacttaaaattgtttcatttctactctgcaattctgctactgttataaatcataatTCAATCCACAGGGTGAGAACTACTGTCTTAAAGGTATTTATGGATTGAAGATGAAGATTCTGTTCTGATCAGTAATTGGAGTTGGAAAATTTGTAGCATCCA----GACAAAGAAGACATGCTGTCCAGGATGCTCAACTCCTAGGATTGTATAACAAAATCTTTCT------GTCATTTCCAGAGCAAGGCATTCTGGGTCCTCCAAACTCACTAACTGAAGGGTAGGCTGGATTCTCAGAGACTTGCTAAGTGGGTGCC------------CTCCTTCCCCC-GCTGCTGGCTGTAGGTGTGTGGCTAGTT-CTTTAGTCTGGTGTA------TTACAAGATCCTGCAGCCTCC--CTCCGTTCTACCCAAACTCCAAAAATGGTATAATTTGGGGGCTTATAACCCGTCCATCCTTTCAATTCTTCTGCGTGCATATTTTAGCTCAATTGCCAGCAGCAATAAAGAAGGGAATCAGTGGAGCGCTTACTGCTGTG-AGCAGTCCCCTAAGATGTCTGAGAAAGCAGATATGTTTAGGTAAACCAGAAGTGAGAATCCTCCAGGGGCGGCTCAGCCACTGAGTTTAATTGGGCGGCAGCTGCTTTCTCTCCTCCCTCCCTCGCTCCTGGTTCAGCTTGCAGACAACAGGGATTTACCAGTTAATTGGCTGTTCCCAGGATTGTCATTCACTTAGGTCCTCTTCCCAGTCTTTGTAAATACAAAATGCTTCTCTTAAAATAATTTGCTTACATGTGGCTCCCCAAGATACTGGTTGGGCCCTCAGACATTTAGGGTTTGTGGAAGTG-------------AGGCAAATGTGTGCGGAGGGTGGGGGGATG---GTGTGTATTGTAGGATTTGGGGTGCTGCTGTG---GAAGTCAGTGCAACTGGGGACCAATGTCCTGGGTTATGCATTATATAAAGGTGTTGGACCTGGTTCAAGTCTCAGAACCAGTCGGGCAGGTTGAGGAAGTTTCTTTCTTTTTCTCACCACCCATCTGAACAGAGGGAACTTTTAACTTCATCAGGTGAATGGTTTACTTGGAAGTGGTGAGAAAGGTCAGCAAGTTGGGGGGTTAGATTTCACAGCTCTATCTATCATCTTTTCGGT-AGGTGATAGACCCCCCCCCCCCAAACAGATGCAAGGCCACAGAAATAAGCAGGAGGCCTACTGGGCCCACCAGCTCGCAATGCAACTTTAGAGTTTAGCTGCTGATGGCTTTTTAAGTTGGCTGGCTGCTGACATTAAACATAGTGGAGACCATTGCCAACATCAATACATCATGCGTGTTTGTATGCTTGCCTGCCTCCAGTTGCATTATGGGACTGGGTTTGGGTGGTCACTCTGACTTCTCTCTTGACTACTCAATGCCAAACTACTG--CCCAGCTTTCTGACAAACTATCCTAGAGCCTTCTACTCTGCTCAGCCTGGTGG--AAAGTTCCAGAATAATTCAGAGAGTGTTTTTCTTTGGATTGTTTTGTCTTTTTTTTTTTTTAATTGGGAATTTTGCCATGCAGGAATTCTAATTGGTTCCTAGGAGATGAGATGATTCTTTTGGCTCCAACAACCTCTACAACATTTCAGCAAGGCCATTCTCTGTTTACCAAATGAATACACTGGCCCCAGGAGCCAAGTTGAAATCAGTTCCAGGCCTCTCTGCTAAAGAAGAAAAGAATGCTATAAGTTATAAATCAACAGGAAAGTCTGGGGGTTGAGTTTCAATAAGTCTCTTTAAACTGGAGAGTTGGTGCTGGTAGTGGGTGAGGTCAAGTGAATTA-----CAATAAGTGTCTTGTTAATTTGTCCAGTGTGCCTTATGTCTCAGTTGCCTCTTTGCTACGCCCTCCTGCTACTCAAATTAGGGAAAAGGAATGTTTAAAAACCT
s HiC_scaffold_1 114802738 3002 - 233722169 TTCTTGTATAGAATATATTTCTTGGTAACCAAATAGCTTTTGAAAGAAACTCCTTCTCTATAGAAGAATCAAACACAGGAGG---AAAGAGAATTTAG------AAAATCACTATGCCACAGAAGCAGGCAATGATCAAATTGgcttttaaaactattaaataaaatgttgatgGACAACTTTATAATCGGTAGATCATGCTGACAGTACTTGAACCCATCGATGAATTTTAAATAGAAGTAGAACAGCTGGGAATAATGTTCCTCCACCTGTAAAATATCCttgccaaaaaaggaaaatattgaatTTAATCAGGCTTTAACCATCAGCTTACACAAAATAAGAACGATTGGAGCACATATTAAAAACAGCACCATGAGAATACAATGACTCAAATCCAGACTATGAGGAATTCTATAGGAAGAATGACAcagtttcctaaaaaaaaaaatggtcttaAAATAATGGACTGGG---------ACTGAACGAGACATACCAA--------------------------CCAaacag---atggattttttt------------ttt-------------------tttttagagaga-------------gagagatccccatttgaaaaaaacaa---------atgtaaaaagaCATTTTTG-----------------------AGA----------------------------------------CTAGTATGGAAGACTGAACATGGACT---------------------------GGGAATTgataatattaacaaatattag--------------------TCTTACGTGAGATGAT------------------------GGTATTGTGG-------------TTatgttagaaatataaaaaagcagGTAgagtggcacaggtctgtaatcctcACATtcggggaggctgaagcaggaggactgcaagttccagcccagcct-------------------------------gtctctagatagatagac--aggaagggagg----------------------------------ctggg---atgtagctccaCCTGGAGGA--ACACACTGCAGAACTA-----------ATGCACGAAAGGATAAGATGTCTGGGATTCACTTTAAAATGTTCTCTCATCTCTTCTAAAAGCA---------------TAGGATATAATTAAAACAGGAATAGCAGAATACTGT-------TGAAGCTGACTGAGGGAAACATGAGGTC--CCCGGTACTATTGTCTCTAatattatatatgtttaaatatgttcatgaTATATAGTAAAAtgactttataaaattttctaaaaattgtcACAGGTTTGTGGGCACCAAAAAGATTTTGGTTCTAGAGT--------TTAAAGACAAGCAGTGTAGTGATACTGACTCAGTTGGTTCTGGACCAGATGAGAGACAGGTTTAGTTGAGCACTACC--ATGGGCAGGAAATAAACC---------------------------------------------------------------------------------------------------CTGAGTAAGTAT-CTAGTGTTAT---------TTCACTC---------------------------------AGGAACTGAAGTTGAAAATTTCTCTCCATACAGAG---GAAATAcgaaaa------aaatcaaatgtgctAGAGAAGCC----TGACCAAGATGACCAACTCCTTGGGGTGCATAGGATTACCTTTCTACTGGAGCCCATTTCTTAACAAAGTATCTGGGGTTCTCCAA-CTCATTAATTAAAGGATCATTTGAGCTCTCAAAGACTTGGTAAGTGAGTGCCGATTTAGTAATTCCCTTTCCTCCAGCTGTTGGTT-TGTGCGTGTTTGTAGTTTCTTCAGTCCGATTCAGTCTGGTTCCAGTAACAAGTAGCCACCACCTCTGTTCTACTCATACGCCAAGAAAAGTGTGCTTTCAGG-CTCATGATCCTTCCATCCTCTCTATTTGCTTATATGCATATTTTAGCTCTGTTGCCAGCAGTAATAAAGAAGGAAATCATCAGAGCCAGCGCTTCTGTTCAACAATCCCCTAAGATCTCCAAGAAGGCAGATCTGTTTAG-TAAACCAGAAGTGAGAATCCTCCTGAGGTGTCTGAGCTACTGAGTTTAATTGAGCTGCAGCTGCTTTCCCTCCTCCCGCTCTCAATCCTGGTTCAGCTTGCAGACAACAGGGATTTACCAGTTAATTGGCTGTTTCTATGATTGTCATTCACTTAGACACTCTTCCTATTCTTTGTTACTACAAAATGCTTTTCtcaaaatgatttgtttttccataGATCCTGAAGACAAATGTGTGACCCGAAAGCCTTTAGGATTGTTAAAGGggcaaaaaaagaccaaaaaaaaagtctacgCCTGGaagttatatgtgtgtgtgtgttgcagggTGTGGGATGTTGCTCTGAACAAAGTCAAATAGAAT-GGGATTGGTGTCCCaggttatattttatataaaggtGCTGGACATGTTACAAGTCTCAGAACCAGTTGGACAGGTTGAGGgagttcctttttatttctcaccACCCAGCTGAACAGAGGAAACTTTCAACTCCTTCACGTGAATG------------GTGTTGAGAAAGGTTGGCAAGCT-CGGGCTTATGTTTCATGGC----TCTATCACCTTTTCTGCAAGGTGCTAGA------CCCCCAAACCAGATACAAGGACCCAGAATGGAGCAGGAGGCCTGCTGGGCCCATCTGCTCTCAGTTCAACTTTAGACCTGGGCTGCCAATGGTTTTTGAACTCAGTTGGCTTCCGACATAAAAAGAAATGGGATCCATTGCCAAAATCAATACGTCATATGTGTTTATGTGTCTGGCTGTCTCAGATTGCATCATGATACTGGGTTTTGGTGGTCACTCTGTCTCCTGTCCTCACGGCT--GTGTCAAACTGCTGCCCCCAGCTTGGTGCCTAACAGCCCTGCAG-TTTCTCCCCTGACAAATTCAGTGGGCAATGTGCCAGAGTAATCCTCAGTGTTTAACTCTTCTaagtgcttta-----ctttttttttaatt-ggaatttCCCCATTCAGAAATCCTAATTGGCTCCTAGGAAGTGAGATGATTC-TTTGGCTCCTGCAACCTCT---ATATTTCTGCAAGGCCAT--TCTGTTTCCCAAATGAATGCACTAG-TCTAGGAGCCAAGATGAAATCAGTTCCAGGTCTTTCCACT---GAAGAAAAGAATGCTATATGATGTAAATCAAAAAGGAA-TCTGGGGGACAAATTTCAGTAAGTCTCCTCTAACTCAGGAATTTGTGCCAGTAATAGGAGGGGTCAGCTGGGTCAGAGGCCTGCCTGCCTCTTGTAAATCTGTAGTATATACCTTGCAACTCAGTtgcccttttctc---tccttttactaCCCAGAGTGAGGAAAGCCAGTGTTTGAAAATTT

a score=61357
s chr3           104351731 2662 + 160039680 aaaGTATCAGTCTCTAG-GCCCTTCTCCACACCAGTGACATCTCTCTTGGTGGGGTAGGGG---GCATTCTGTTGCTTCGGTTCTTCAGCTTGTTCCAAGGTAATGCATGTGTCAAGCACCATCCGTCTCTGCAATGGAAAG--------------AACACATTAGCATTCCCTTTCCACAT-----------------------TGCTAGTCTGCAAAGTCAGGGTTATCTCTATACTGCGATGACTGGAGCTC-AAAATTCTATGATTCTCTTTCAACTCTCTCCG---CTGGAAGCAAGGTGCATCCCAGGGGCCAGCTACTTTCCCATCACACCTAGGTCTTCTTGAAAGCTGGCTGCCACCTAAGAAGATCTATCTAATCGGGTCAGCATGTTGGTGAGTTCAGATTGCCTTACCCAGCTTAAGTAAATATGTAGTGTTGGTTTACAGAGGAAAAATACAAGTTCCCTGGCCTGTCTGATATGTGTGCGCCTACCAACTAGCTTCAAGTGTGCAGTGGAATTTTTTCCTAATGCATATTTAAGTCCCCTGG-TGTGC-AGTTTCCAGTTCCTCTGATGTTCAGCTAATTGGAAACGCACCTTATACTCTGGAAAGCCTTAAAATAAAAATGGATCCCACCTCTTTGTCCCATTGGTGGAAATTTAAATAATTATAAAGCTAAGGAGACA--GTTAACCAAAATGTGTA-CTTGGGGTCTGGCCTGTACTTCAACTAGATATTACTGGAGTTG--GGAAGGGGTGG--------TTTAGCTCCTAAACT-AAGCACAATTAGTCTGAGCATAAAGGAAGTTTAAAGGGGCGCTAATTGCTTTTAAAAAGATAAATTGAATTGAGTCAGAGAAGCAGAAAATTACCTTTGTTGAGAATCATCATGGTTGTTAAAGAAGGGGAGGGCTTGTTG-AATTGGAACAACT--GATTGCACACAACTGAGAGG---ATCTTACCTCTTCCCCCACCAACCATAAATCCCAAGTAGGAAATTTCAAGTTAGCAGTGCTGCCCAGGGAAAGCCAGGTGGGAATTCCCCAGACCATGGTAAGCCTCTA---ACGTCTGACATTCGTGCCAACTTTTGTCTTCAGGTCTCTTGGCCAGGACTCTCAATGTCATTTGTAAATGTTATCTCCGAGGGTGTGTGGAGAAACTGTCTGAGCAAAGGTAATTGAAATTCAGCTCTA-GTTTTAAATAGGCCTTC-GGGCAGGGGTGAAGGAGAGTGCTCTCCTC-GTGAACTCTACAGACCTTGAGGGTGTGTTAC-----TCATGAGTCCAATATGCGTGGGAGAGGGAGTATTTATAGCTTTGGGAGTCCTGCTAAGGAGATAGCAAACTGAGACAAAACCTGGTGTGTCAAGGCATACAGTATTCAGACCATGATGCTTTGCTGCCATGCACGTTGGGCAGAAAATCACGGAGACAGGGGCATGCCACAGAAAGGGTTCTTTCTCTCACGGTATACAGGAAGCATGGAGAGAAACGGGAAGAGGTCCGAGACTGGGTCCAGAGATGCTTGTCCCAGGAGGAGGCATGTAGAAAAGCTGCCCTTCGCTCCTCCACAGAATC---CTGAAAGCTGGGGATATATTTGACTTATTCAGTGTGATTATGCAAATGGTCCTTGGTTTTTCCCTCAAATATCTGTGCACACAC-GTGACAAAAATTTGGGAAGACTTCCTTAGGAAATCCCACCGGAACCTGCTGTACTTCTCCACCCTGTATGTATCGGCGGCTCTCACACCACTGTCTTT------------------------------CTCCTGTCTTCTCCATCTCCCTCTCTCCTTTGGCATTCATACCCCTGCCCACGACTTCCCGTGCTCAGATCCAGATCAACTGCCCAGGGTTATTCTTGAGCTTCTCACTGAAGCTTGGCACCCACCCTTGCCATCTGA-----ACCCTAACTCATCTGAAGGGAGCCTTGACTCCTCCCCTCCTTATGCAAGTCCTCAGTGGTGGTCAGCTGTCTCACCACTGCCCACCAGCAGATccctgacagtaagagct-taggcagaaagactctggtttg---cttcagctctggtttcagaggatttgatcccagtct--ctggg--------------cctcatgttcagaacctcatggtgactggggcatgtagtgacagtctgtccaccacatggtcaacaggaacagggagcgggaatgggacaggaacctgatagaacttcccaaagccctccacctcagtgacttacttcctcctgtaaaactgtagtgcaaagttttcagaaactcataaaatggtgctatagctacagaccCCCCctctcttccc--cctctcctctcctccctccctctttctctgtctctctctgtctctctctc-----tctccctccatccctcc-------ctccatctctactct--ctaccctgtccctgggagggctactacag-cctctggcgactctcaccctgctcacccttgctctccacaatggattctccacacagtggccagcgtgaactttacagaatgtaaatcagctcatgttaattgcctgattacaaccctGCCATGTTAGACTAGGAGCA-AAGGGTGTCT--TTCTGTAAAACCCCACAGAAGCAGATTGATGGAGGAAAACAGTGTCTGCACGAACTTTCCAGCAGCCACATGTACTGACagcacttgataaaacccaacccttgttcacagtggaaaccagaaacagaagagaatttccttagcttgataaaAGCAAGCAAATGCATTTTT
s HiC_scaffold_1 114805733 2500 - 233722169 AAAATTTCAGCACCCAGAGAGCTTCTCAGC--CAATTAAATCTGTGTCCTTGGAGgaggtttttgcttttgtttgctttaaatCTCCAGTTAATTCAAATGTGCTGCATG-GTCAAGAACCATCACTCT----AACGGGAAGTCCAAAGAGCTGGGAATAAATTACCA---CCTTTCCAGATCCTGCCTTTGCCACCGGAGAGTATGTGGGTGAGTAAAACCATGGGTAACTCTGTTCTAAGATGATTAGAGCTCTAAAATACTGTGATTCCTTTGCAACTGTTTTCTATCCTGGAAACAAACAGCATCCCAAAG-CCAACTATTTTCCAGAAAAACCCAGACCTCCTTTAAAACTGTCCACAATGTATAAAGATCTGTCTAATCGGATCAGCATGTTGCCGAGCTCAGATTCTTTTACTGCACTTAAGTAAACAAGTAGTGTTggtttacaaaggaaaaatacaagcTCCATGATATTTCTGATA-ATATGGGCTTACCAACTAGTTTCAAGTGAATAGTGGAA-TTTTTCTTAATGCATATTTAAATACTCTAGTTGTACTAGTTTTCAATTCCTCCGATGCTCAGTTAATTAGAAGTGTACCCTTG--TTGGGaatgccttaaaataaaaatggattccctttttttctcccacTGGTGGAagtttaaatacttaaaaa--taagatGACAATGTTATCGAAAACGTGCATTTTTTGGTCTGGCCTGGATGTTAACTAGATATTATTGCAGTTGTCTAAAAGGATAGAGAAAAGCTTCAGCTCTTGAACTAAAGCATAATTAGTCAG-GCAAAAAGGAACTCTAAAGGGGTACTAATTGctcttaaaaagataaattgaatTGAACCAGAGAAGCAGAAAATTACCTTTGTTGAGAATCATCTTAGTTGGTTAAGAA-GGGAGGGCTTGTTGAAATTGGAACAACTAAAAATGAGCATAGATGAGAGGAGAACCTTACCACTTTCTCCACCAAACATAAATCCTAAGGCAGAAACCT--------GAGCGCCACCCAGTTAAGGCAAGGTTGG---CCTCCGGCTCCCAGTAA-CCTGCATGTATATCTTCAAGCTGTGCCAGTGATTGTCTTGGCATCCTGTAACAAGGACTCCCAATGTCAGGTGTAAATGTAATCTCAAAGGATATGTTGTGAAACTGTCTGAATGAAAGTAATTGAAactcagtttcattttttaaatgggcCTTCAGGGCAGGGGTAA---ATAGTGCTCCTTGCTGTGAACCCTGCAGTCTTTCAGGATACGTCATAAGTAGAATGAGACCAGTGTGTGTG---AAACTAGAATTTATAACTCCTTGAGTCAAGTTTAAGAGATGGCAAAATCAAAGTAAATATGATATGTCACA-----------------------------------------------------------------------GCCACAAGAG------------TCTTGGGACCCAGTGACC--GGAGGTAAA----------------------TCCAGAGGTATTCTTTC---ATGTAGGCGTTTA-CAAAGTCACCCTTTCTTCCTCCAGAAATTCAGACAAGGGGCTGAGCACATGTTTGTTTTATCCAGTATG--CGTGC-AATAGTCCTTGGTTTTTCACTCACATAT-TGACCACACACAATAACAAAA--TCAGGAAATGTTCATTGCTAACCCCCTT-----TCTGC----CCTCATCACCGTCTTTCTCCCAAGAGCTTTCACACCACGGACCATTCGCACCATTGGCCAACCACACCCGGGCCATTCCTATCTTTGCCGT-----TCTCCCCTCTGGTCTTC-TCTTCCTACC-----CTTCCCACCCTGTAACCTTGCTTGTC-------------TCTAGTCCTTTTTGCTGGCCCTTGG--------CTTGCTG-CTGACCAATACCAGGACTC-CCCGAGTGTGGCCCTGGGTCCTGGTCT----------------------------CTGTCTCACCCTTTCC--CTGGCTGTTC----ACATCTGTAGCCGTGGTTTCAAACTCCCTAATCTAGATCATCAGCTCC----------GACTTGTCCCCAGACTTCCTCAGATAGCTAATTTTCTCCTCAGTATCTGAACCTA--GGTGTCCG--------AATGCCATCTGACTCCTAACATGTCTAA----------------------AACAGAAACTTGATTTCTCTTCTCCCGG------ACTTAATT--CTTAGGTTCTCCATTAAA----TAATACGGG---TCCATCTACT----------TGCTCAAACCAGGAACCTAGCAGTCATTCTCAaaacttccttttttctctaacCCTTCAATGAGTTCTGTCAGT-TTTATCTCCAAAATATCTTTCTAATCCTCCCACTTAGCTCCATTTCTACTCTCCCTGTCCTTGCCCTGTGAGGACTGTCACAGCCCTCTGGctaatctttctcttttcaccTTTGCTCCCTGCAATGCATTCTCCACACAATGGCCAGGGTGAACTTTACAGAATGTAAATCAGATCCTGTTAATCACCTGATTAAAACTCTGC---------CCAGGAATGCAACGATACCTTGTTCTGTAAAACACCCCATTAACAGATTAGAGGAGAAAAA------CTACA-GAAGTATCCAGCTGACA---GTGA-GACAGCTTtcagtaaaattcaaaatttgttcATGGAAACTACTAGAAATAGAAGAGAATTTGCTTAGGCAGATAAAcgtaataaaatgtattttt

a score=19033
s chr3           104356066 1231 + 160039680 AAGAGGAAAGCCATGAAATGTTAATATTATAATGTTAATATTATAATCTGTAACATTCAGACTTAGCTCTTGAAGATTGCCTTCTTTCTGATCTGATAGCAGGGGCAGGACCCCAGGATGAAGACAAA------------TACTGCAACATCTTGGTGCATAGGGTTGCCCGCACTCCTGGACACCAAGCCTAGTTCCCTGAAACTGCTATCTCTCAAGGAGATGCCTGCTCTGGCCAA-CTGCACAGATGGCTCTGGGGTTGTCA---CTGG-----------------------------------------------AGAGTGACCTAGAATTATGCTGG---------TCAGCAGCA-------CCGCTTC------------------------TTCCTG----------------AACAAACTGGATTTAAAA-------------------------------ACTGACCTGGACTTACACCGGAGTTGGAGACAGTGTGATGCTCTGCTAACCcctcacctatctaccttctcccatcactaacatattacatcaacgtatttgtcacagttcgtgagccagaactgatacaccattcctaattaatacccataccttTAGATATCA---------------------------------CAtcagaccttccttgctttcagcctcaacagttcagaagaatgttggtcaggaac-------attcttcagctggaatttatctgatCTCCTCTTCCTTCTGTTTTCAAATGTTAGAGATTGGCTTCCTTGCCCCAA----CGGCTGGACCAGCCCT-GTTAAGTCTGAGGCAATGCAAGAAGAACCCATAGGCATCTCTGTGGGGGAGGTATTGGGTCTAAGAAGCCCAGTTTCAGAACAATCCCTCATTGATAGA-CCAGGAAGCTGCT-TTGGGCCTCCACGCCTCCTTTTCTGGGGAGATCTTCTGTAGTGCACAGCAGTGCCAATGGCACGCAAGTCTTTCCCACGTGAATTTCCTGTTCTACAGGGTCCACATGCAGACAGTCTTTCCTATTGTTCTGTG-----TGTCTCTACTCTCTGCAGCCACATGCTTGAG-TTCATGATTACCAAACAAA-----TTAAACCAAG-------------TTCTGAAATTCTTGGGTTTTAGTCCATCAAGGGCCTCTTTGAGAAGTTAGGCAGAAGCAGTTCATCCCAGAGTCTTATGGACCCTATGAGGA-----------------------AACCCTGACACAAG-GTAGTGTAGAACACACATGCTCTACACGCAGGTTTTATAGATTATAGCTCTGTTATACCTTTTCTTGAATGGAGAGTCTGGGAAGACACCCACAATTCTCAGGTTTGTTGAGTCCCAGGCTCTGA-CATCAGTAGTTCCTGGTTCATCT-----TGGCCTAGGATGACCACAATAGCCTATGGAGTTCCTCTA
s HiC_scaffold_1 114808852 1398 - 233722169 AGGAAGATGGTGATGGCATGC----ATCACAGTGATGAT-------TCTGTAACACTTAGCCTCCGTTCTTGAAGGTTGTCTCCTGTCTGGTCAGACACCAAGGACAGGATCTCAAAATCAAGGTAAAATCATCACATTTCACTGTGACATCTTGAGTTGCAAGGTTGCCCAAACCTCTGGACTCTATGCTCGGAACCTAGAAACT-CTGCCTCTTTGAGATCACCCAGTCCAGGCTAATTTGAACAGGCTGCACCCAGACTGTCAGCCCTGGGAAGGGCTTCCGAGTACTCCTTCTTTTTAACAAACttttaaatgttaagaataatttgaaaaggggctggggatttagctcagcggcataagcacctgccttgcaagcaggcggtcgtgagttcaatccctggtaccgataaaaatgaaaaagacaaaaatgaaaaagacaaaaaaaaaaaaaaaaaaaaaaaaaagaataatttgaatTTGTAGAAAATTTGCAGTCAGTAGACACCTCCCATTCCCCCTTAC------AGCTTCAGCCTTTATTAACATCTTATATTAGTATATATGCCACAATGAGTGAAT----AttgatacattattattaacAAGTCCTCATACATTTAGATATCATGTCCCTTTAGGCTCCTCTAGACTGTGATGATTCTTCAGACTTTCCTTGCTTTGA-CCTGGACAGTTCTGAGGAGTGTTGGTCAAGTATTTTGCAGAGTATTTGACTGGGATTTGTCGGATGCCCTCAACCTAC--TTTTTAAGTAGCAGAGTCTGGCTCCCTTCCCCCAAACAGAAGTGGGAACAGCTGTGGTTAACCATAAAGCCATGCAAGAAGAGCCTCAAGGCATCTCTGTGGAAT-GCTGCAGGGCCTGAGAAACCTAG-TCCAGAACAATCCCTCATTTATAGACCCAGGAAGCTGCTCTCCAGCCTTTACGCC-CCTTTCCTGGGAGGATCTTCCCTATCACCTACCCTCCTCAGCTGCAT-CAGTTC-------------ATTCCTGCCCCACAGGATCCACCAGAAGACAA--CTTCTCATTGTGCTGAGCTCCCTGACCCCAACCCCTGTG--CACACACTTGAACTTCATG-TTGCCACACTAACGTGTTTACATTGAGACCCTCTGCCTCAGTCAGAGGTAAGTGGGTCATAATTGA-----AGTCTCTTTCACCATTT------------------CCAGGCCTTTGTGAACCTGCTGAGAATGAAACAACAGGGACCCCAGTGTGGCCCTGAGACAAGCAAAGTATGGAATACACACCCTCAAT---CAAATTAGAAGTGACAAGTCTCCCTGCTGCCTTTGCATGAGTGG-----------AGGTACCTAAAATACTTGGGTTTGGGGAGACCAAGGCTCTGATCTCCAAGAGACCCAAACTAATCTTAACGTGGCCTCTAACTAGGACAGTCTCTTCGGCAGGCCCTCTA

a score=41740
s chr3           104359649 2816 + 160039680 AAGTCAGAAGCCTCAGCTGATGCCGAGTGC----CTGGTGGGTGGGGCTGCCTCTGTGTGGCAGAACGTGTTGTGGCTGTTCCCTCAACTTTTATTGCCCTGGCTGTGCGTGGGCTGCCAGAGCCCAGCTCCTGTCCCCAGGGCACTTTAAAGGAACTTCAGTACCTCAACAATCAAGTTCAAAGGTGGGAATATACAAGGTGTGTTTGGGGTGTGGGAAAAAGAGCGGAGTCAGGAAAAGAGGGGGAAGATGCTTGCCCAGAGCCAGGAAGGAAAGAGCAGAGA----GGGAGGGGGGAGAGGGGAATAGTTT-ACCTGAGGTACAGAGGAACCACTAGAGGGAGGGTGGCCTACAATCCCT-TGCCCTATAATCACATGCAAACTTACTAAGAAGACCGTGGACTTCCATCAGAATCTCCAAAATGTGGTGGCCTCGGGAAGCCGAGTAGACAGACTTGGTGCTAGCAAACAGCTTGTGAGCAGGTTTTGGAGAACACTGCTCTGGCAACGGTGTACATACTAGAATGGAGTCTCACTAGTGTTGCTGGTGGAAAACATGTTCCATGGCAAGATAATGTGTAAATATTTGAAATCTGACATGTGGGTGTTTAATAAGATTGTCTGCCTCTCTGTGGAGGAGTTAGAAATGCTTACTTCTAATAGAGGCAGGCCCTGAGTTCGTACAGAAGTCTG--AGAGTTCAGGAAAGTACCCACTAGCTGCA------CAGCCTCCTTTGCTGACTG-----CCCCACAGCTGGCTTTGACTCTGCCTGAGGCTCTCAGCTCTCGGTTCAACCTCTCAT---TCCAGGTTGG-CTGGGTGCTGGTCATCGatttactcattccacaaatattttcttgaatgccgactactgtgccagtgtgtgagtcaagccca-gccttgacctcaaataaaccacaggcagcaagggacagagatggagtgtcaggcgatggcagagtgtggctgagagcatcagtgtgggg-----------gcaggagggcAGCC---------------------CATACACTGCGCCAG--TGGA---GGGGAAGCAGCCAAAG-----------------TAGACCCA-GATGCCTCCTGGCCTCTTTGAG----TCTTTCTCAGCCATGGAGATGAGTCTTACATCAGGCATCTATAGAACTGAGGACCAACCACTCTCTGCTGCGAGTGTCTTT---TTCCTTTCATCTTAAGTTCTAGGACACATAACAAAGAGAAAAGAGCTAACCTAAAGAGGAAAGAGTGAGTTTGAAACACAggagatgggaggtgattctatggctaagagtacttgttgctcttgtagaggacccaggtttggatcccagctcccacatgatggctcacaaacatctgtaactccagttccaggagatccaacactccctttggacctttgcagaaaacaggctcacacatggtacacactcatgcaggcaggcaaaacactcacacatgtaaaataaggtaaaaaataaaAACAAAAAAATTACATTTGTCATATTTG--CCAGGGATGTTCATCTGGATCAGCCACCTGACAGGTAACTCTTTTGGTTTCATTTTGGCT------AACATCTGTGCCTAGCTCTCCAGGGAAGAGCCCTTGGATAGGA--------GCTCCCCATTGCT-GTCACGTGTCAGTGAAAAGCTGGGTGCCTGCCCACCCTTTCTGTCTG-AATTTAATACCCCACTCTTGAACACCTTGGCTGCTGAAAGGG---TGCGTGGGTCAGAGTAGTCTTGATCCTTAGGGAGACGTAAAGGGGAATG-GACATCAAAGGAaacgaggcatggtggctcacacccaatgttagcgctccggaggttgagacagtaggattgttgtgagctcacgagcagcctgggttataacagtgagttctaggcatgtctcacaaaatgagaAAAGCATGGAGAAAGGTggtggggtataggtggagtgtaggtggggtataggtggggtgtaggtggggtataagtagtgggtggtgggatgtaggaggggtgtaggtggggtgcaggtgggggttgtatggttgtaaagactggcaaatccaaaacctgcaaggcgagggggca--tcttgggaag-----agcttggtgttctggcagacctccttaagaaagggtgattatggccattgactatccttggactcaatt---ctacttggatgatttacactcccattacagagagaaagctgctttttgcagagccccactgattttaactc-------taatcttgcccctagtatgcccttgcagaaatatctagaataa-aaaaaatcacacagctgcatattgtgacctaagtaagttgacacatacaattaCCT-----GCCCCAGAGctggccgtccgtaatgctcctcatcagtgagac-aggctgg--ggaacgggggagggcattgcacaaaccaggaatgaggacgtaggctttcttccgcacttaaaaccccg-cctaagggagccatgcgagaggctcacagctgccttctcc-tttctttcctcttg--ctctaggtgttaagtgaacggagtagagcatattaactgaagcagctcagct-gacctgggagtcttcctctcctgtgacctcttgggtggcttgcctagtagcatacttgatgataccatttacaaggtattttgctacacTCCATAAGCCCAACGACCTGGCATTGGGATTTACAGTGTCACTCTTCTGTGTCTTAGATTCTGCTTTCTTACTGTCTACAGGTCCTGGGTAATGGAGTCATGAACCTTAAACTAACACAATGCATGCTGGGCCTGTGGGTTTTTCTCTTTTATTAATGCTTAACAGCTTTCAATAAATATGAG-TGTTTTTTTGGGATCTCAGACGTGAAAGATGCTACAGGATTACCTCTG
s HiC_scaffold_1 114813092 2353 - 233722169 AAGTCGGAAGCCTGTGCTG---CCCAAAGCGGTGACGGTGGGCGGGCCTGCGACTGGGCTGCGGAACAGGTTGGGGCCGCTCCCTGGACTTTTACTGCCCTGGCTGTGCGTGGGCTGGGACGGCCCAGCTCCTGTCCCCGGGGCACCTTAAAGGGCCTGCAGGACCTCTGACTCCAAGTTCAAAGGTGGGAAAGCACGGGGTGTGTGTGGGGCGTGGGAAGGCGAGCAGAGCCCTGGGAGCAGG----------TCTCCCAGAGCGTGAAGAagtgaggcagaggcaggtggaGGCGGGCTAAGGGGGTAGTTTTGTCAAAGGTAATGGGAGACCACTAGAGGGAGGATGGGCTACAATCACTGTCCCCAATAACGGTATGCAAATTTAGGGAGAAGATGGTCTCCTTTCAACAGAGTCTCAAAAGTGCTGTGATAC----AAAC--AGTAAACAGA-----TGCTAG------GCTGCTGAGCAGGCTGCGG-GAGTCTTGCTCTGGCAACAGCATGCGTGCTAGAATGGAGTTTCGCTGGTTTTCCTGGTGGAAAACATGTTCTATGGCAAGATAGCGTGTAAATATTTGAAATCTGACATTTGGGTGTTTAATAAGATCGTCTGACTCTCTGTCTACGAGACACAAATTTTTACTTTCAGTAGAGGTGGCCTCCAACCTAATAAGCATGCCGGGCATATTCCTAAGAAGTAGCTGTTTCCTGTGTGGTGTCAGTGTGTTTCTCTGGGTTCCTCCCCCCACAGTTGGCTTTGACTCTGCCGGTGCCTCCCATCTCTGGGTCCTGCATCTCATGTATCCAGGTTGGTCCAGGCCTAAGCCACTGATTCACTcacttcacaaatattttcttgaaagCTGTCTGTTGTGCAAAGGGACAGGCAATGCCTGTTCCTTAACCTTAGATAAACCACAGGCAGTGGGGCACAGGCCCAGAGAAGCAGGCAGTGATAATGTGTGACTAACAGTACCAGCATGGGGCTCCACTCAGCACGGGAGGGGAACTGGCAGGCCTAGGTCCTCTAGACAGGAATGGAGTCAGCATGGGTCCGGGGAGGCCACCACAGCCACCTGCAGCTTGTTATGGAGCTGTGCTGCCTCCCTGCTCCTTTGAGCTTATCTTTCCTCAACCTGCAGGGGAATCTCACATTTGAC--TTGTGGAGTCTAAG--------CTATTAGCTTTGagtgtctttgtctttcttttttctt------------acagcTGAAGGGAGGAAGAGCTAGcccaagaaaaaa------------------------------------------ctcaaaatg--tgttgTTAATGTAG-----TCAAGTTTGGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------TGAGAATGAGAAGA--ACATTTGTCCCCTTTGCCCCAGGCACGTTCCCCTGAATTGGCCATCTAGCAGGTGCCTCTT----CTTCAGCCTGGCCTCTATGAACCTCTGCAC--------CCGGGCAGAGGTCCTTTCATAAAACACACCTCCCTCCCGAAAGCCAGCCCCACAACATT---AGGCAGGCTGCC--CTTCCCCTTTATGTCTGTCCCTTAAAGCTCCACCCT--AACACCATGACCGCAGAGAGGGAATTTGATGTGCTGGACTTGTCCAAATGGCTGGGGATAGGCAGGGAGGATTGTGACATCAGAGGAAA--------------------------------------------------------------------GCAAATAGACT------------------------------------ACGGGAAGAG------------------------------------------------------------AGATTTTAAGAAATTGGC-----------------------------------------TCATGCATTTGTGGAAGCTGGCAAATTCAAATTTTGTGGGGTAGGCTGTCAGGCCTAGGGAAGTATCCAATTCAGTCTATTGGCAGCCCTCCCTGAGA---GGGAATTATGCCAGGAGACTGAC--TGGACTCGGTTCAGCTGATTGGATGAGGCCCACCCATATTATGGAGGGCAAACTGCTTT------------ACTTATGTCTACTCCAAATCGTAATCCTGTCCAAAAATTACCTTCCCAGAAATACTTAGGATAATATTTAACCAAATATTAGCATACTGTGGCCTAAACAAGTTAATACGGACAATAAACTCACAAGGCTCAATGCTGGT--TCTGTGAT-----TAGCTAGTAAGTCAAGGCTGGTAGCAGTGAGGGCGGGAGTT-CACCACCC----ATAATGGCA--------CTTC--CACCTAGCACACTACCCTAAAGGCGTTA------------------GCCTACTTTGTTTCTTTCCCCCTGGCTTCTTACTGTAAATC------AATAAACCACGTT-ATTGACACACCTTATTTAGATCTGTGGGTCTGTCTCTTCTGTGATCTCTGGGGTAGCTCACCTGCTAGTGTAT------------------AAGTAACTTTTCAAGCTGCA-ACACCCAAAGACCCAGC-TTGAACTTTGTAATGATGCT---------------------TCTCTCATTCTCCACAGGTTGTAAGGAGTGG-GTAATG--------------ACAACGATTGAAG----CATGGGTTCTCCTCTTCTACCTA----AAACAGCTTTCCATGAATGTTTGTTGTCTTTCAGGGACTGGAAACCTGGAAGAAGTGATGAAGCTTCTCCTG

a score=124363
s chr3           104362707 5876 + 160039680 [encoded data, 6307 characters]
s HiC_scaffold_1 114816255 5566 - 233722169 [encoded data, 6307 characters]

a score=34469
s chr3           104373263 3695 + 160039680 [encoded data, 4390 characters]
s HiC_scaffold_1 114823172 3894 - 233722169 [encoded data, 4390 characters]

a score=49849
s chr3           104377608 3331 + 160039680 GTGGACTCTC-GAAGCTTGAGTCTTTGTAACAAATACTAATAACTAGAAAAGC-------------CGTATCAGGTGGAAAGGAGTCCATTTGCCTCAGAATTTCTGAGGTAAAATCCACCAGATCTTTAACCATGGAGCAAT--TGGTGGGTTTTCTGCTGCAAATCTTTTTTTTTTTTTCCCGTCAGGATGTTGCTCCTGGTAAAAACAAAAATGTATTGAACAGCTCCCCGCCCCCCACCACCACCCCCATACACACCCTTGGTTCCTTGGCTGGCTTTGCCTAATGCTCAAGACAAAGTTATTGATGACATTTCCGGTAAATCATTTTCTGTCTCCTACAATCTTTCAAGGTTCTTGAGTATATTAAAAACACTCCCCAAGAACATTATAAGAAAAATGATCTCCTATGGTACAGCTCACCGTATAATGGGACCTCCTCCCTCTTTTCCATCCGGTAGTCCCTCTTAACAAAATGTCACGGTTTAAGTGCAGAAATCTCAGACAATCTTGTGGCAAACTAAAGTGCTTTG-AATTCGCTCATCTGATTTAAAGAAGGAGTCTGAGTAACTCACAGAAAAG----------CCTTCCTTCAAGATGCGGTATGTTTCTTTAAGTGGATAACAGACCCCACAAATGCTTAATCAATTTCTTTCACCATgggtctggagctaggacgcagccatgggaatagtatgttgctctaagaacctgggttcaaattccaacaccaaatcagcagctcacaattgcctttaactgcagcgccaggggactgaaacctctctctggcctccaaggacaatacagtcacatgcacagatgtcacatgcacaGATGTGATGTGAACTTTTTTTTTTTAATGCAAATCTTTGTGTTTTCATAAGACAAGGAGAGCC-TGGGTTTGTTTCGATGGCAGAACA----CT--------TCCCAGAATCAGTTA---------------------------CCTCAAACAGAGGCCTAGAAA--------------------------TCCTTGTTCCTCTCCTCCCCCCACACCC--CCACTCTGTATAGCTAAATTGTTaat--------------------------------ttttattataaag-------------cccaagaagtcagagtctc-cgggcactggtgcggtgactcacagggacaggg---aactgttcatgctttttcaaatctacttttggtaccaaaagttctctccttgaggatagaataatgtgtctaaattaagagaccCTGGC-------ATATTTTTCACAATAACACAAAATTCATTCCCTCTCTCCCCTTCCTCCCCAGCCTTCCCCTCCCTGCCTCAGAGGA-----TCTTGGGCT-----GAGGCGGGTTCCTCTCGGCTCCTTTTCTAAAGATCACAAAACAGGGATTTCCTGGTATTCAGTTTGCTTTCTCCC-CATATTTTTCTTTTCTTCTTTTTTTTTAAAGTCCTTTTCTCTGTAAGGATATGTAAAGCAACTCTAAATTGGGATTGCCTCCATGAAGGCCAGGATGGGCAGGAGGGGACTTTT-ATCTTCACCCCCTTCGGCCCAATTAAAATCATGCTAAA-----------GTTCTTTATATATAACTTAAAATAATTTTTCTAACTACAAGGAGTAT-TTGTTTGCATTGTTGGCAAATGCGATTTGTTAATATATAGAAAAGAAAACAGTGACAAGCTAACTGTCGTTCTCATTGTTCAAGTATGTACCTAGTGTGTCAAGTCCCTCTAGCTAGGAACGCTGCAGGCTCGTGGATGGCGACAAGAAAAGGAATGTACCTGAGTTGG--AGAAATGGTATCTTGGGGTCTAGGAGCC-CTGATGTCTTCTCAAGCAATCCTCCTCGACACCCCACCCCACCCCCAAATTCCTGACGGCCATCTTTTTACCTGAGATTCAGTGTTAATGCTGGTCTGTTTGCT-TTTAGCTTCTAAATTATTTTTTTTAAtttgttttttga-tactgagtttcttaaagtccagggtggttttgaactcctgatcctcctgcctttctcgtgactgcCTGAGCCTCTTGAAAGCTGGACAAGCACTGGATAGCCTGAGCCCCAagcttcccaaatttggctgttgtctgctctcctattctgttagcctggggaaatcttgcttgttttgattcctattcatagatagactcttacaggatttcccaagtggataaaggtgtgtgtgttcaacttggcatctttaactaggagtTGCCCACAAATGGCTTGAAATAGTTAACAGTATTTTAATGACTACATAGTCTTTGTTGCAGGTTAAGTTGGCCATGGTTTATTTGA---TCTCACTTAACAGGTATGTTTCTGTCTATATTATTTATATTGCAAAGATAAAATACTTAA----AATAGACTTGGTCTTAAAAATGTGGGCAAGTTATAGATTCTTGGCAGGTACATCTACATATTGGAAGGATGTCTGTTTCTGTGTCCTGGGG--TTAGAGGAGTGCCC--------CTCCCTATCATTCT-----GTGCTCCACTGTCTA--AGACTGTTCTTCCTTGAGAAATGGGCTTCCATCCTGTTTGACT-CTTCTCTCTGGCTTTTGCTCTCTAC------ACAGTTCCTCTGGTCCTTGGGGAATCATGTGCTTGCTCTGTGCTCAGCTAGCTCCTCGCTCACCTAACCGGGATCAGAAGCATTAGAATGTACTAGAAACATCATCATTCGGGGCTCTTTTCCAAT----CCTAGTTTGCATTTTGCCTAAATTTCCATTTTGGATCTTCCGTGTGGGAACCTTC---AGAATATGGGGCTTTTTTTTTTTCTCCTAAGATtttaattctatttttgtgtctagtgctctgcctgtatgtatgtttgtataccaagtacctaaacagaggccagaagatggtgttgaattctctggactggagctacagatgggtgtgggtgctaggaattgaacctgggtcttctggaggagcagccagtgctcttagccactgagccatttagcccAAGATGCTAGGCTTTGTGGTTGAGCCTAGTTAACTTTAAAGTTCCTAAGCCATGGTATTTTCTCTATTCGTCAGCTTTTT--CAATTGAACGAAGATTTGTGCCTTAGCCTTATTCGTCTGTATCTTAGAATCTCTGAAGCAACTGTGTGATTAAATCCAACTGTGATTTTGTTGGTCTACTCTGAGTAGGGAGAGAACTTGACAAATTAAAGAATGAGTCAAGTATTAGCTAGTTTTGTA--GGTAAAATGCTCCTATGTGTAACAGGCTC----AATTTTCACTGTCTCAATGTACTGGCTTGAATGTGTTT--GGGACCAGGGGAGAGGTCCTGAGCCAGAGCACATCCCCCTTTGACTGCCTTCTTTTAGGTCCAAGGGAAGAAT--CTTAGAATATTCCTAATCACTAACCAAAAATAAAGGTCTGAGAGTATCCCACGGGGTTCAGAA-CCCCTTGGCTCCTAATTTCACTTCTTTCt
s HiC_scaffold_1 114827146 2911 - 233722169 GTGAAACCTCAGAAGCATG-GTATGTGCAACAAATCTCAA-----AGAAAAGAGTTTTAAATTTAGTGCATCAGATGACAATAAACCTTGTCACCTCAGAAAATCTGAGACAAAACTCACCAAAT---GAACCACAGTGCAATCTTGGTGATTTTACTGTTGCAGAT--------TTTCTGAGAGTAGATCTGCGGCCTTCTGATACAACCAAAACACATTTAACAAGTCCC-----------ACAATTCCC------------------CTGGCTGGATTTGTTTTATGTTCAAGACAAAGCTATCAGCAATATTTCAGGTGAATCATTCTCCATCTTCTGTAGTCTTTCAAGGTCTTTGAGTGTATTAAAA-CATTTCCCAGGAACATTATTA-AAAAATGATCTTCTAACATATAGCTCACCATATAATGAGGTATTTTTTCTATGT-CTGTCCCACAGTTCCTCTTAACAAAATGCCATGATTTAAGTGCAGAAGTCTTTGGGACTCCCTTGGCAAATTAAAGTGTTTTTCAATTTGCTCATTTGGTTTAA-GAAATAGGCTGCATAACCTGTGTAAGAGACGTATCAAACCCTCACTTAATATATGGTGTGTTTCCTTAGGTGCATAAAAGAGCTTGGAAATTCTTAATTTA-------------------------ATGACG------------------ATTGTTC----ACCTTGGCAAGATATTTCAGCATAGA-----CAGC----------------CAGCAGTGACAG----CTGAAA-----------------------------------------------------------------------------------GCAAATCCACATATTTGCATAAGACAAGAAGAGCTATGATTTTACTGTGGAGACAAAACAAAGGCTGAGTACAATCCCAAATCTAATTATTAAAGTAGAAATAGCAAATCTTTTCACCATAAATtgatgatttgaaaaaaaaatctctaggtctcacttttcttttctctttctctctctctctcacacttaGCCACT-TGCAAAGATAAATTGTTAATGACAAAAATGGTCCCGATGAAACATTCagagtttttattaaaaaaaaaaaaaaaaaaacccaggaagtCAAAGCCTAATGGGCAAATGTA---TGAATCACAGGGAAAGTGTTGAACTAttcattatttcttcagttttatttttgcaccaaaagttgtttctttaatgATGGAACAATGTTACTAATTTGAGAGACCTCTGTTAGccaaatatctttaaaaataacacagaattcatttcctctctccttttccttgtcAGCCTTTTCTTCCT--CCATAGAAGAGAGTCTCTTGGGCTCTCCAAGAAAGTGTTAATCTCTGCCCTTTTTCTGATT-TAACAAAATGGTGGG---CTGGtttttatctcactttttttttcctattttgttttttttattttctt---aaaatatttaaactatattAGCTAACAAAGCAACTTTAAATTGGATTTATCTCAACAGAGGAAAGGATAGGCAAAGAAggactttttaattttactcCTTTCGCCACAATTAAAGTTTGGCTTATTATAGAAGTATGTGctcattatataatttaaaatg--ttttctgacaATAAGTAGTATATTATGCAGattgtttgtaaa------------ataaaaaaaaaaaaagaaagtg------taaatGTCCTCGTCCTC-------TCTGTGCCTGGTA----AGGTC-----ATCGAGGGCTCCTGCAGGGTAG--GAGGGGGAGAAGAAATGGAC----CCACAGTTGGGAAAAAATTATATCTTGGG-TATAGATGCTTCCTATGGACTCTCAAATAATCC--------ATTTTCTTTCAGCCTCACCTTCCCGA-----GACTTT----CTGAGCTTCTGAG--AAAGCAAATTGCCTTCCTGTTTAGTTCCTACATGGCT-------ACCTGTCCCCTGAACACTTGGT-------GGTC----ATGTTTTTGGTATGTCAACTCTGTTGTTT--------ACTTTCAGG---TTTCTAAAGTT----------TTGCTAGCCT--------AGCCTATCAAATGTG-CTGTTATCTTCTGTCCTGTTCTTGAAGCTTTGTgagat-ttgtcaatttttattt-tattcataga----aTTTTGTAGGGTTTTCCAAATGGGTATAGGT----------AATT----ACATTTAACCAGGAGT-GCCCATACACTGCTTGAAATTTTTAACACTATTTTAATGATGGCGTAGTAACACTTGAA---TATGT--GCCATGATTTATTTAGCTGTGTCTTTT-----GTGTAATTTTGACTGTGTTATTTATTTCCTTAAGATAAAAtactaaatacaaatatttttggaCCTAAGAATATGAACAATTCAAAGACC--------------------ACTGAAAGGTTGTCTATTTATGTGCCCCAGAGGATCATGGGAGTACCCACCTCCTACTCCCCGCCATGTTTCTTGATGCTCCACCTTCTCCTGAATTGTCTCTTCTTGAAAAGCAGGCCTTGATTCTATATGACTTCTTCTCTTGGGATGCTGTTCACTACCTACTCATGGTTCCTCTGGGCCCCA--------------------------------CTCTGAGCTCACCTAAGCAGGATTGGAA-------CATACTCCTGAAACATCCT---GCAGGGCTCCCTTCCCATGTTTCCCATTTTACATTCAGCCTGAATTTCCATTTTGGCTCTTTGATATAGGAATCTTCCACAGGACACTCGACCTTTACTCTTTCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTTAACCGCAA----CTTATGCTGTGATATTTTCTGT-----TGAGCTACTTGGTGGTGGAATGAAGATCTGTGCTTTAATCTTATTAGTCTGAAACTCAGAATCTCTTAGGCAATTGCCTGACCAAACCGGTCTGTGGTTTTGTTGATCTGCTTTCAGTAAGACAAGGGCTTGATCGGTTCAAAAACTAGACAAATGTCCTGTGGTTTTTGAAGGGTAAAATGCTCTTATTTTT--CAAGCTCCTAAATTTTTCATTGTCTAAACTGATTGACTTGAGTATATTTTAGGAATGGGGAAAAAGGTCCTCCTTCAGTGTGAGTCCAATTTGGACTCTCCTAGTTGCAGACAGCACAAGGACTTCCTGAGGACATTCCAGCATGCTCCTTGAAGA-AAGGACCTCAGAGTGTTCCGCAGGAACCAGACTCCCCTTTGTTcttaattctatttattctt

a score=28169
s chr3           104383201 1255 + 160039680 CTTATACATCTCTAATAGACTGTATTTCTCATTACTTAGTTTCAGGTTGTTCTCTC----------TTCCGGTGCTGTGATCATTG---TAACCCTGCTCCTCAGAGCAGTGCCTGGGTACTGCAGGGTTAGTCCACAATAGGCAGTCA-CAAGTCATTGAGTGGAGCTGTTTAATCTCCACCATGGT-------------TTCAGtcatcaaccccattttaaagatgagaaaatagaggcacaggacagttgagtg-cttg-tagcagcaggccaatttgtaggtgaaggatcatgcagcctcgccccagcactcttcctccagagtGCTTAGC----------AAGAGTGCCCAGTC-TCTGATGTTCGCTTATTTTCTAAGCAAAAT-AGAATTTTTTAAAGAAACAAAAAAGCTGTTAAAaaacaaacaaacaaaaacaaacaaacaaacaaaAACCCATATGAGGCCCCCTTT--ATCCTTTCCCATTTCTGCTCTCTGCAGCTTCCCTCACAGATA-----TTGCCTGGAGCTGGTGTGTCCCCTTCCCGCCTTTGCCTGTCTGGCTTGCTATCTGGAAC----TGCCTT-CTGTGGCTGCTGAGCCAGAGGAG-------TGCCTGGGCTCACACA----------------AAGCTCCCAGATCCACCC---AAGGCGAGTATCAACT---CTCATTACTTTCACTTTCCTGGTGTTGGAGTGATTTTTTTCCCCTCTCTTTTCTACTTACAGACACTCATTTTTCTAGCTGAAAATAGAAAGCCTTATCAGATTGGAATAACAGTCCTTTTTGCTGTAGTTTTTTCCCCCAAAGACTGGATGAATTTGGGCTTCGTCAGAAAGCCATCTGCTGTGTACGCACAGACCTATTCCGAGCCAGAAAAAGAAAATGAGGGAGGAGAAAACCCTGGCTT-CTCATCTTAATTCAAAGAGCCGTCGTCTGTCAACT------------CCCACTCCTCAAAAGGAAGCTGACCACTGCCCTCACCTGTCACTGGGGACCTAGGATCGGGGAGGTCT--CATTGAGCACAATGGCCTTGCA----------GCCAACAAAGAAAAGACTCTGCCTG--AAGAAGGAATCGAGCCAGTGTTCCACAGAACATACATGGTTTGTGGCCAGCTGCCTATTTCCTCCAGACCACACCCTCTCCTGGTCATCATTAACTGCTTGTCATTCCTGCCATGTTAGA-CTTGCCAGTCTCAGGCCCGGACTATGTCAGAAAG--GCTTTTAGGTTTTCTAGAGGCTACCTCATTCTCTTATTGAGTAGCCTTGCCACCAAGGAAGCACTCACTTTTGTTCCTATAGACAGGCA
s HiC_scaffold_1 114831060 1254 - 233722169 CTCATCCCTATCTAACatactatgttttgttttatttagccTCTTATTGCCCCCCCGCTACAGCTTTTTGTGTGCACTGATCATTGCTGTGTCCCTGCCACTTA------TGTCTGG----TATATAGGTGGCCCTCAGTAGATACTCAATGAATGAATAAGCGAAATCATGTCATCTCCACCACAGCCTTATATGATATCTTCTATTATcctctccattttaaaaatgagaaaattgaagcACCAAGCAGTTCAATAACTTGCTAGGATTATGCCGTTGGTAAGAGGAACGGTCG-GTATCCTAACCCCTGTGGACTCGTTCAATAGTCCTTGCTCTTGATGGTAAAAAACACCCAGTTACCTATtacttgtttgctttttaaagaaaacgaGAAATGTCTAACGAGT---AAAAGTTATGGAAATAC-----------------------------------TTGGAAGTTTCCTTTTCAGTGCTTCCCATTTCTGAACCCGCCAGCTCTCCTCAGACAGAACCCCTGTCCTGAAGCTGACA-ATTCCCTTCCAACCTTTGGGTCTACATTTCACTgctttgaatgttttgtttttctgtagctTTGGAGCCATGGGAGACACCAGTGCCTGGAGGTAGACAGGCTCTGCATACTTAAAAACTCCCAAATCCACCTCGAAAGGGAAGTATtgactgcttttgtttctttcagtttcc-------------atttttcccccct----tttctaCTTACAGACACTCATTTTTCTAGCTGAAAATAGAAAGCCTTATCAGATTGGAAAAACAGTCC---TTGCTGtagtttttttccccaaagactGGGTGCATTTGGGCCTCATCAGAAAGCCATCTGCTGTGTACGCACAGACCTATTCagagccagaaaaagaaaatgaaggagggGGAAGCCCTGGCTTACTCATCTTAAAACGAAGAGTTGT-GCCTTGCAACTTGTGAATTCCACCACACTTTTGACA---AAACCAGCCACAGACAGCGCTGTGAACAGGGAGAGAAGGACATGGGGGGTTCTGCGTGGAGTGAGGTGACCTTGCAAAGCTCTGCCGCCAACAGATGAAAGAGGCAGACCGTACAGAAAGAA-----------------------------GGCTGTGGCCTCCCACCTGTTTGGGGGAGGCCACCCCCTTTCTTGGCTGCATTTCACTTCTTGTCATTTCT-TCATGTCAAACCTCATCTAGCTTGGCACAGGACTGTCATGGGAAGGTGCTGTGAGATTTTC-AGAGGGTACC-------CTCATTGCATC-CACAGCCACCTAAAGGCCGATCACTCCCGCTGCTACAGCTAAGCA

a score=23362
s chr3           104385082 1297 + 160039680 TTTCATAAGTACAAAAGTACTGTTAGCTGGTTATAAAACATTTAAGGAATACCTATATA------------------------------------CCTTAGAAAGCTAA-AGGCCTTTGTTACCCCGCTGCTACAGGGGTAGCTGTTACAAGTTTGTTGCATGTGCTTACAGA-CTTTTCACAATTTGCATAGCTGTGACATATGTAAATCTGTATACCTGGTAGCACCGGTGTACTTTCCAAAGAAATGACCCTCCCCTCTCTCCTCTGGTTGCT-ATTTAGTATCTGTTTTTCCTTCCAGACTGCCCTGTGTCTAAGA-----GAAACTCCACCACAGTCTTTTGAGATCAAATGGAAACTCTGTCGTCCAAGAACATCTTCCTGTTGGTAACCCTTGGGAAGCCATGACCATGTTCCCAACCAGACATCCTGCCAGTATCCAAAACATCCGATGGAGGAGCCTCCCCACTCCACACTAATGGGAGAA----GTCACATTCCGTT-TGACATTTTTGAGTAGAGGACTTGCAGGGGAAAAGATTACAATTCATGATTTTGGAGCACAGCAGTGTTCAGGGACTGACTTGCGAAGCATCGTGTTGAGTAAATGACTCGGTCATGAAGGGCGGTTCTACTT-----------------------------GGCTGCCA----TGGAGACAGAAG------------------TGTGGGCC-------TCTCCA---------CTCTTGG---CTGGCTCCCA-------CAGCTCTG-GGCTCAGAGCTATA------CAGTTTATTCAGC----AGACTGGGGGCT------CTGTGGTATCACCTG-------------------------------------GAAGTGAGGCTCTGGATGAGAGCCCAGTGGTGTAGC-AAGGCTCCTC-GTGGATGCAGCTATATACAGA---ACATGTCTGTCCAC-ACGATCAAGGCTGGGCAAGGATCCA-------TGCAATTCTTATCCATCCAGTGATTCTCTGGCGGGCGCACAATCCTCAGGATGACCAGCCTCCCAGATGGCTCTG--TTATGGTGTAATCTAATTTTTTTTTTTACTTATTCATTATCCAGTCTTATATACCCTTGGCTCCGTCATTTCAGAGGGTACAATTTTCTTCAGAGAAAATTTGTGCCAACTCTTCAACAATACGTCTCCACTTGAAGGACATTCATCATATTCCCTTCAGCTTTGATTTTCCTTTAAGCTAGTTTCAGAAGGTAATTCTGATACAGAATGGTGTAATTGGGTTCTTTGAACATTCATTGCCTTAATC--ATAAAAAGGGAAATAGTCTTTCTCTCCCTGTTTCCCCCCTCCCTCTTCCTCCTCCCCCTCTCTTCCCACCACATACCCCTTGAGCTTCCTtctcttctccctctctctctctctctctctctctcctacttcttctctctctTCCTTCTCGGGTGCTTCATTTT
s HiC_scaffold_1 114832432 1398 - 233722169 ttttataaatatacaaataaca--aaccgattgcaaaatatttaa---atatctatatAATTTTCCTAGTTAAATATTTTGCAATCAGATTGTAATCTTAGAAAGTTAAGAGATCTTTGGTATGGC----CTGGAGAGGTA-TTGTTACTAGTTTGTTGTACattcttgtagaatttttcaTCATTTGCAT-GCTTTGATTTATATAA--CTATACACGTTATAGCACCC-TGTACTTTC-ATAGTACTGACCTATCTAACTGGTCTTTGGTTACTTACCTAACAT-TGTCTCTCCC-ACAGACTATAATGATCATGAGAATCTAGAAGACCCA----GATCTTTGGAGTGAAATTGGGAGCTTGGTCATCTAAGCACATCTTTCCCCTAATCACTGCCAGGAAAACATGACTTTCTTTCCAACCAGGAGTCTAACCAATATCCA-----------GATGCAGCCTTTTCATGTCACA-TAGAGGGAGAAAAATGCTACATTCAGTTCtgacattttttaataaatgagtt---agaaaaaaaattattatttcaga-----aGATAAAACAGTGGTCAGGGACTGACTTGTGAGGTAGCTTGCTGAGTAAATCACGCAAGCACAGAAATCTGCTCTGCTCAGCACCAGCCCCCACACCCCTGGAGTCTAGGCTGGCACAATTGGATTCAGGAGCTCTGGCAGGCTCAGGGTTCCAGGCCTCCAGTGTCTCCAGAGCTGAGGCTCAGGGATCCAGGCCTCCAGCGTCTCCAGAGCTGAGGCtcagggctccaggcctccagtgTCTCCAGAGCTGAGGCTCAGGGCTCCAGGCCTCTAGTGTCTCCAGAGCTGAGGCtcagggctccaggcctccagtgTTGTCAGAGCTGAGGCGCTGGGTGTGGGCCCTGT-ATGCAGTGGAGGCTCCCCTGT-----CAGCTGCATACAGAATGACATTTCAGCCCACAATGCTGAAGCCTGGGCAGAGAGCCAAGGGTGGAGGAATTGCCATCTTCCCTGAGGTTCCCAGGGATGCGACCA--CTGGAAAGAGACTAA-CTCCCAAAGGACTCTGTTTTGTGGTAtgatc--------acttttatttatttattttccactctTACAGAGACCTGGCTCCTTC----------GGACCATTTCCTTCCTGGAGAAATTGTGCTGTTTCGTCAACGTTATATTTCAACTTAAAAGACTTCCTCCATCTTcccttctgttttgatttcaccgGAAGCCAATTTCAGATAGCAGTTCTGATATAAGGTGG-------GAATACTTCCAATCTCCATTGCTTTAATCTTAGAGAAATGtgacttctctttttctgttcttttttcctacCCTTTTGTCTCCTCCC-------------------TCCTTtgccctcctttctttccttcttttttatgtttctccaccagtctcc--cttcctctctttcttctatatataacatttgatttt

a score=59332
s chr3           104387484 3654 + 160039680 TTAAACATAGATGGACATTTTT-----AGTAGCTAGACCTGAGGACTAAAATGCATTTGC-AGAATCATCTTACGATTCCAGCCTCTACTATAAATCGTTA---ATGGCCTTCCATA-ATCCACATCATAATCCA---------GACAAGCAAAATGCATGGGGAATGGTGG-GGAGATCGTGGGACACAAG---------CACGGAATGAAGAA-----------------TTTGTTCTGCAAAACCTGATCCCAATCTGTATCTCTGGATTAA-----ACTTGTCTTTTAAAAAACACACTTCTCCAAGGATAACCGCCCGTTTAGCAGAAGCTCTTTCACCCCCTAGACACTCATTTTTGATTCCAAGGTCTTTCCGTCTTAATACAGGTGTCGCCTCGACACCTCTCTCCTTTCTCCTGACATCTAAGTTTTTCCATTAAATAAAATGTATGATTTAAATTTCAATTTTACCGAAGCTGCGGGTAGAATTAAAGGGATCATTCAGATGAGTGATTTCATTGAATGTCACTTCACATGAATTTACATAAAGGTTCAAAAGGAAATTGCACAGCCTCCAAAAATTCTTTTGAAGGAGAAAGGAGGAAAATGTATatttattgggcacctatggttgtcaagcaatgaactggatgact----ttacgtcatcccatttaatctttgtggccagcaggtgacatcggcagtctcacacccactgtctaggggacaga------------agatgaggtgatcagcagagAGTCACA--CCCTGCTGAGTGCAGCACACATTCTTGACTTCCCACACCCCTGCAACCCAAATGTAGCTATCTCCTCTTAGAGGGGGAACT------TGCACAGCATCAAGCAT-GTCCTGGAAGTGCCCTGCTGGCATCCCAAGTGGCCTTCAAACCACAGATGAGTGCTATCCACTGCTGGGACATAACCATAT---------TCCAGGTCCAGATGCACCATGGGGACCACACCATTACTGCTCCCAAGGCTGAGAGTCCAGGGTGGCCATCTTTGGCCTGGGCCGAGG---CTGGAGTTTTGACTTCCTTTCCCTCCTGACCCCTCTGCAACATGTG-------TCAGTAGCACTAGTGGCTCATG-----------------------CTCCCACACTCATGTCTGGGATGTGGAGAAGGAGTCTTTGGAAGTGACCCAGCCctgcctggctctgcacaggcaatttgacatctcaatgcctacctccttctctgagagttgaagtccacatctggcagca-tcatggattcaatgatcaaaactatg--agtgcttagtgcagtgtgtgg------caagtgttccatgagtgtGCACCGTTGCTCACACTGCTATGGCTGCCAGCCTCAGCACAGCTCTGACA--TCATCAA--------TAGAAGCCGTCG-------GATTCACCCTTCCTGGTCATTGTGTCTCCACCACACTGGCACACTGGACTCCTTCTTACCTTTGGGGCACACTTTCCC-----------ACATCACCGTGAGACCTACGGTCATTCTGGGCTTATCTAGATTCTAGGATGGCTCTAAGTTAGGCACAAGCTTGTTCTAGGGATACTGCCTAGGGTAAATACAACCCCAGATGCCGTGCTAATGGAATCAAGGTTGAATTAAAATTTTCCCTGCTTAACAACTGATCTGTGgatttccaaggggaaattggtctaccaggctctgtggtggtaaggaagaccatgtctggaatatgagcgatcccttaggattcctcttagtattaattttccctgCCGACAATCCTGCCAGAGACTTGTTCCAACAGAATAACGGA-TGGATGGCAAATAAAAGGGCATCTTCCAAGGGATGTGCAG----GCTGCTGCAT-AGCTGCTTTTCCCTCTGTGCTGAAATCCCA---------GCACACTGAC---CTGGGGCAGCTTGAGGTTGCTGGGAGGTGCCCTCTTCCTGGAGTCGCTCTTGCCTCCTCTCTTCCTACCCACTTCCTTGACCTTCCT-------GAAGTCTTTGCT----GCTTGGATCCCCATTGCCATCTTATAGCCATGCCCGATTCAGATGGCAGTCAGTTCACTGTCATCTCTGTCCACATTTGTCACTACCTAGGACTCTTAGAGAGTGAAAGTGGAACCCCAGCTACAGGCAGTGTAGCTCAGTGCTTCCCACCAAACCCCAGCCTCCCTCTGGTAG---------------TTATTCCCTGCCTTTAACTCCTCCAACCGCTCCCTCTTCAGGAAAGGCTTT--------------ggggccggagagatggttcagtggt------------------taagagcacctgtt---gcccttgca----gagaacctgggctctgttcccacatg---gtggctcacaaccatctgtgtaacttcaaccattgccctcctctgaactctgagggcacctgggacagatatgttatatgtgcatatgtgaatgcaaaatattcatacacataagatTACATAAATCTAAGAGAAAGAAAAGGGGAAAACACCTTCCCCATCTATGGAGGATGGGGGCTGGGGGGAAGGAGTCATCGACTTCCACAGTTTCCAGATATCTCATCACCATTTATGACCTGCCCAAATCTCTATGTTAGCAACACTCCCCCTCACCCCCTGGGGGGGGGAGCACTCACAGACACTTCTACTTAAGGGCTGTCTTTGTATTGTTTTCTTTTGTACATATGTAAACAGTGTCCCCACCTCTAACCCTTCCCCACAGTTTGTTGAGATGAACTGGGTCCTCACGGATGACAGTCCTCGCAGCCAGTGCGGCAGTGATTCCTCAAGTAACATGCCCTGCTCTGGAGGGTGTTATGCCCCGTGGGACAGCCCAGGGTTTTTCTAATGTTATGCATGCTGCTCTGCTGGTCCAGGTCCTGGATTGGCTTTGGAGCCCCTGGGCAGCTGACCCAGCTGTCACT-ACACCAGGCTGGGATCCAGCCGCCAGCGTGTCTGTGGCTTCTCAAGGTCAAGGGAAGGCTCCATCTCGGAGCATAGACTCTCAAGTCTGAAACACAGCCTCAGCAGAATTTGCTTT-GGCTAATTTGTCTTTTTTAGCATCCAGGGAGGGAAATTGAACTCATTGTTCTGCTCTTAATAAAATGAAACGCAGCCTGCAGAAGCGCGAGGCTGGCGGTGTCACTCGGCCATGCAGGCCAGC-TTTCTCTAAAATTGATTGATGGCTACACAT---------AAAATGATGTAATTTTTATGTCTCTGGAAATTCCTCATTACATATTTTACCCCTCCTTATGAGCCCT-----CAGTAGTGAATGATTCTGTGTAGAGAATATTATAGGAAAACTACCCGAAGGTGACAGACGCA--GGCAG--AGAGTTTGGGGGGAGAGGGTGAGGGCAACACAAGCCATCtgagcgtctactgtgtcccag----------agtg-tgccacatagtttgcttaca-tacagtcactgtgaccctctgggtaagatgggaaaatctacacttcaaagatggagaagctaagagtcagagatggtgaaaccctcaccccag---------ctagtgagcataggccaggctggagctcactatggccctg--ctacaaagctttctctttcc-------CATGGAG-------------------GGATCTTGACCTTTAT---------ACGTGTGTTTAGCACTCTCACCTGGATCTGTCCATGTGTCCTCGATCCCTGGTGCTGTCTGGTCTCACCAGAATCCCTGGGATGGTATGAAATGTCCCACCACTTTACTACCAGTGAGCAAGCTGTCAGGCAAGGAACTGCCACGGTATTTTAGGTCAG-------GGTTCCACAACCTCACCCAGGCTTATAA-----AGGACATTGGGGTTTCTAAAAACCCC
s HiC_scaffold_1 114835253 3486 - 233722169 ttaaatgtagatgGACATCTTTTTTTAAGTACTTAGATCTAAAGCCTGAAATAATTTTACCAAAATTGTCCAAAGATgtggttttataaaattaatcattatatataatctttaatatatttgtataataagataatattaactgaaaaaaaaaataaaggagaaatagtgGAGGAAAATCTaagacaaaaagaattttaacattGAATAGAAAACTCCAAATGCAGgccattttctctttcaaaaacagATTTGAATCTAAATCTTTGGattaatttggatttctttttca-----------tttttaaggatAAGAGTCCATTTAACAAAAGCTCTTTCACCCTTCAAATAGTTATTTTTAGTGCTAAGGTCTTTTCTTCCTAatacagtttctttttcctttctcttttttcttctcctgacATCTAAGTTGTaccattaaataaaatgtatgatttaaatttcaattttactgaagCTGCGGATAGAATTAAAGGGATCATACAGATGGGTGATTTCATTGAATGTCACTTCACATAAATTTACATAAAGCTTCAAAAAG-ATCTACACAGCCTCTAAAAATTCTTCTGaagaagaatggagaaaaatgtatatttattgagcacctatggTTTGCCAGC--CTGTCTGGCAAACTTGTCTTATgtcatctcatttaatccttatggCCAAGTGGGAAAGTCAACATTATCCTGCTCATTTTATATGGGAAAGAGCAGACCTTGGGAGATGCAATGAACCATGGGAAATAGCCTTCCCTACT-------------CTCCATGACTT-CTATAC------------AATGTATCTGGATTGTGTTAAAGGAGAAACTGCTTAATGTG-AGCTCCCACTGTAGACGTGGAAGTCCTTTGGTGATGTCTCGGGTGGTCTTCCCACTACAGATGCCTCCT-TCCAGCACTTGGAGGCATCTGCATCGTCCCCTGTTCACATTCAGATGCGCGGTGGGTATCACCTAGTTACTGCTCCTGATGCTCAGACTCCAGTGTAAACATATTTTGTCTTAGCCAAGGTCACTGGAACCCTGAGTTTCCTCATTGTGAAATCTGACTGCTAGAAGTTGTTGACCTTGATGACATTGGtgttctatattttttgtttttctggttttgttttcccATACTAATGTGTGATGCGTAGAGGAACAGTCTGGCGCAGGTCCTCCCACAGGCCTGGCTCCGCACAAGCAACT-------------------------------------AGACTACACCTAGCAGCATTTATAGATTTAGCAATGGAAGGTGTGAAAGTGCTTAGCACAGCACCTGGTGCAATTAAATCCTTCACAAACGGGCACGGCTGCTGCCGCCACTGTTTCTCTCTCCAGCAGTA-AGTGATTACAGTCCTTCAGCTTGGTCCCAGAGGCCCGCGCATAGCAGACTCTGCTGACCAGGTCATTATGTCTGAACTGAGTGAGTGTGCTGGGCACATTCTCCCC---AGGGCTCCCTATCCCCTGGTAGGCTGACCTC-CTACGAGGCCTGTGGTAATGGTGGCCTTCCCTGGATTCTAGAATGGCTGTGA-TTAGTGATGAGCTAAATCTGAGGACAAAACCTAGTGT--------CCCTTGAAACC------------------------TAAAGT---------------ACTGCCATGCTGACATTCACATGGA-----------------------------------------------------------------------------ATCAATGT---------------CTGCCAGAGACTTGTCCCTCCAGAGTAACTGAGTGGCTGGCAGGTGGAAGAGCATCATCCCTGGAGTTGTCAGCCCTGATGGTGAGTGAGCTCCTTCCCCCT------TCAAATTCCAGACTCCTTGGCACACTGTCTTTCTGGTGCAAAGAGGAACCCCTCTGAGGTACCCTCTTCCCAG-GTCTTTCCTGGCCCCTA-ATGCCCAATGACTTCCTTTTCAATCACTGCCAAGGGAATCAATGCTAAGGGCTTACTTTCCCATCA------------CAGGCCTGAGAAAAGGATCAATGA-TTCACTGCAAACTCCGTCACCATCTGCTGCTGGCATGGACTCTAAGAGA--CAGAGCAGGA-CCTAGTCACAAG------GGCTCAGTG-TTCCTGCCAAGGCCAAGCCTCCCCCAATTAACACACCTGCTCTCCTTTACTTCTAACCATTGGCTCCTTCA---GGTTCCTGTCCAAGGAATGCCTTTCCCTACTGTCTCAAGGGTCCTTCACACTGCTCCACAGTCTCCAGACACCTCACCACCATGACAACCCGTCCAGACCTCTGCACTGCAAGAACGTA---TCCCTCCCTGTATGCATGAGACT-----CCATTTGCCT---CTCTGACATTGCCTTCTTTTGTCATCT------------------TATTTCA-GTTTACATATGTG-----AAAATATTCTTCTGAGTCCAAATTCATA---CTTAG------------------------CCTGATTT----------------------------CCAACAACATCCAAAATTGTTAAAAACCCCA----------------ATCCAAAG---TGTGTTAAAA----------------TCTAGAAGGGTGGAGACT-------------------ATGCTGTA-------AATCCTCTTTTTTAC---------------TCTCACCTCCAACCCTGCCCT-CAGT---TTAAGGTCCATGGGGCCAGAGTGCGTCACCACCCTCACAACCAGTGTAGCACCATCCTCACAACCAGTGTG--CTGCTCAGGAGGACAGCGTGTCCTGGATCCGGGCTCAAGGTCACTCTGATTCCACATGTACTGCTCTGCTGG-CCAGGCCCTTGCTC---------------------CTGACCCAGCTGTGAATCACAAAAGGCTGGGATCCAGCCACCAGCGTGTCTGCGGCTGCCCAGGGTCACAGGAAG---CCATCTTGG-GCTCAGGATCTCAAGTACTGAATATAGTTTCAGCTGAATTTCCTTTGGGTTAATCTGTCTTTTTTAGTATCCAAAGAGGGAAATAAGGCTTTTTGCTctgcttttaataaaataaaatgcaacttaGAGAAGAAGGAAGCTAGTGGGATCGCTCAGCTATGCAAGCTGACTTTTCTCTAAA----ACTGATAGTTCCACATGAGCGTGCAAAAATAA--TAACTTTCACGTCTGTGGAAATTCATCATTACACAGTTTACCCCTCCTTGAGGGTTCTCAGCACAGTAGTGAATGGTTCACAGCCaggaatattttagaaaaacCCTAGGGATCTGGCTAATGAAATGGAAGGCAGAGCCaagagggcaggagagagga----ACAACCGCCTTGAGTGTCTGCTGTGTCTCAGACCCCACATTAGTGATGTTATAAACTTTGCCTCAATTACTGTCATTTCAGCCCTGTGCGTTAGACATGATGACCCTTGCTTTACAAATGG-GAAGATACAGTTTGGAGAGGGTAATGAGCTTGCCCAAGGTCATATAACTAG-AAGCAGGGG--AGGTTTAAACT-----TGGCTTTGTCCTACAATGCCTTGAACTTCCCAGTCAGCAGGGAGTCCAGGGTGAGCTTAGCTTGGAGTTTGACCTTATCTCTGGAATGATGGATATTTGACTCTTTCTCCTGGATCTGTCCATGTGGTTGTGTGCTCTACTG----CTGATAACAGCATAGACTCTCAGATGG-----------------CTTTGCTGATAGTAAATGAACAAAAGGTGACGGAAATTCCAAAA-GCTCCAGACCAGGCTGCAAGGCTCCACAGGCTC-TCCAGACTTATGAAGGACAGGACATTGACGTT--TAGAAACCCC

a score=54542
s chr3           104395996 4219 + 160039680 [encoded data, 4651 characters]
s HiC_scaffold_1 114841866 4030 - 233722169 [encoded data, 4651 characters]

a score=33816
s chr3           104401854 2351 + 160039680 agccccTTAAAATATCTTTTTATTTAG---------------ATACCAGAATATACCAAGAAAGGTGAAATTATGCTCATGATCTTA----------CTCTCCTATATCCTTAAAAAATACtcctttctggtct-tatctagatgttcatataatttttacagctatattcatggcaacaaaaaat-------------------gagatttga-------------------------------------------------------------tatttctgtttaacattat-acgagagcatttctccaagtcaccacataatcttcgtgattatatatatttttaatggcagcgtaatgcagcccagagcaatggaagcagaaaagcacagccattccccttcccaaacccatttaggatctgtccaatttttcactTCAAATGATAGCCAGTctctcccgccccctcccctccccctccccctccccctcccACCCCCGCAGAACTGAAGAACAGCAGCAGACTCCTGATGAAACTGGGAGGTTTGGGCGTTGAACAGCCGT--TCCATGTACAGGTGGTTTGCCCGGGACTCACCCTCGATAGTGAAAACAAATGGGTGGAACAGCC-TCAGA--GAAAGGC----TGGGTAAGATG-GATGCCCTGGAAACACACAGTGACACCAGCCATTTCCCAAGTCATCC--ATTTCCTAAGTCCCTCTGAAACCCCTGCCAGCCACTCAGCTGGTGACAAGGTAAGGGGGCACTTAAAGGGAATGGCACAGGGTCTCAATCTAGCTCCTGCAAGAAG--AAAGTATCCAGGGG-TAGGGGAACTCTGCCTCCTCTAGATCTTATCACTCTCTTGAGCCTGGAACCTCCAAAGTGTGAAAAC-----------TGAGGGCCTC-----CTGCTCCC-----TCCAGGGGCCAGGCAGATGTGGTGTGCATCTCCCTGGATCCAGCG-----CTGACTGATCCAGTGCTGGCTCTTGTCATTCTCCTGTAAACTCTGCCTCGCAG-ACAGGCAGTTCTAGCCCCAGGCCGGTAGCCTAGCACCAC--CCCTCATGTTGACTGTGCCAACTGGGACTCCTGGACCAGGAGCCTCTCTCCTGGCTCATTTGGT-------------GTTGAGAACTGCAGGCAGCTTTGGGAGGTGACAAGAAGCAGAAG-GAAGAGGATGTCACCATTGCTTTTAAGGTCATATCTATTTGGAGAGAATTCAAAATGCAAGCATACTAATGCAGTCACCAT-GGCCAAATTAATTTACTGCCTCCTGCTCA---CAGCTGCCCTGCCCCTTAGAATG----------AGTTGAATTTTGAGATCTGGTGGTGG-GGCAGAGCCCAGTGCAAAGTCTGCCATCAT-CTAT----GGTCAATGTCAAGGTCATTCTAAGCTAGG-CTTGCTTT---TATTAGTCACAGAAGCAGCCAACA--------GTatttattgttcaatattatgtgaaacagtacccatgttttatctacacaatatcccgaataatcctcacagcaactctgaaagaaagggctgttcctagctagccctgttcaatgggtgggaaagcacaagggcaggaaagtggagtagctcacccaagccatcctgcaagcagactgctagctaagatgcagggtcaggtttggtctgatggcactgactctagttgatcctccagaggctgaggcagaggatcataagttcaagacctgcctagacgattgagtgagttttagggcaacctgggtaacctagtgggaggctacctcaaaaCTAAAAAGAggggctgacaagatggcttgactggtaaaagggctcaacactaagcctgatgatatgagttcaggccctgagccccacatggtacaaggatagagccaactcccccaaacttctcgtctccacatgagcacatctccatagcacaggaatgtgcgttctcacattcagacTCAGACTAAGCAGGCTCACTGGTATGCATAAGCTCCCTCTCAGGTGAACACCTTCTGCCACCCTTACCACAACCATGGTAAAA---TAATGACTGAGCCCTTAGGGAATGCCAGACACTTTACTAAGAGGTTTG---------CTCTAGCTCCTGAATGAGGAAACTGGGAGTTAAAGAGATTATGT----------AAGACCTGTGGCTACTGAGC-CGGCAG----TCATTTCCTCTCCAGtctggttcctccttctttcagagtaataagaccccacttttagctgcaca--------tctagaacgaaggctgcactcct-aaactcTA-GGGGGTGGGATACAT--TTGTATGACTGATGTCATGGATGCAGTGGATATCGC-----CAAAAAT---------AGCTTTCTG----CCACAGCCAGACCTCTTT-TCTCCTCCCAGATGATGGGACATGACCATGACGTAGTTACATGCAGCCCAGGGCAGCCAGATCCATGAACAGCAGAGCTGCCATGACAGTAGGGCC-CAGGGAAAAGCAAGCCACAGGGTAGCAAGAATCTGGCTCTTCAAGGGATTCATGAAGTCGAG
s HiC_scaffold_1 114847600 2149 - 233722169 AGATCTTTAAATGATCTTTTGATTTAGTGCTCAAATGCAAGAATAtcagaatacatttaaaaaggagaTATTATAC-CACAATCTTAAccactctttttttcccccctttttgaAG-----TTCTTTTTGGTCCCTGTCCAGATGTACACATAATTTTTACAGTTATATTCATGGcaaagatgaattttttttttttttgtattgggaattcaaactcaggacgttgagcttgccaggctggcacataagcctctgagctatatccccagccctatattttCAGTTAACACCACGATGCAGGCATTTTTCCAAGTTACCACATAATCTACATGGTTATAT---TTTTTAATGGCTGCCTCATCTCCTTCCAAGTGATGGAACTATCATTTGCAACTGGTTCTCCTTTCCTTAatcatttaggttgtttccagtttttcactCCAAGTGAT--------------GCATCCTTTT-----------------------------GCAGA-CTGTGGAGAAGCAATAGATCCTTGGTTTAACTGGTGTTTTCTGGTAT----CAGTGGTAAGCTGTGGACAGGTAGGCAGCCCA----CCACTTCTCATGGCCAAACCAACTAA-TGGAACAGCCCTCAGATAGAAAGGTCACATGGGAAGGGTGTGAGGGGTTGGAGGAGATCAGGGCTAAT-GCCTTCACCCTTGTTGGCCCAGCCTTCCCGGTCTCTCAGGGA--------------GTAGCTGTTAACA---------------CAGAGTAAATGGCAGAGGGTCCCAGTTTGGCTCCTGCAAGAAGCCAAACCAGCAAGCTACTTAGGGAGTGCTCTATGCCCGAG-TGTTGTCACCCCTCTGggctttgggcctccagagagtGAATACCCACAATGCTCTGTGGACCCTAATCACTGATCCCAGGAGTCTAAGCAGAAAGGAAATGTAGCGTTTTGCTGATTACATCAAGCTGCAGTCTAGCTAACCCAATGCTGCGGCTTCCTGCTCCCCTGCAACTTCTGCCTTAGGGTACAGGTGGTCCCAGCCCTGAG---GCAGCTCAGCTTCCCTTCCCCCACCCTGCCTGTGCCAGCTGGGACTCCTGGCCCTAGAGCTTCTTGCCTGGCTCCTCTGGAAAAGCACCCTGGAGATGAGAATTGCTGACAGCTTTGGGaaatgaaaacaagcagaaaagcAGAGGATGTTCCTGTTGCTTTTAAGGTCAGCTTTATTTGGAGAGAATTCAAAATGCAAGCATATTAATGCAGCCGCTGTAAGCCAAGTTCATTTCTTGCCTCCTGGTTATTGCATCAGTCCCGCCCCTTAGAATGATttgaatttatttgaattttggagTCTGGTGGGGGAGACAGAATCCTATGGAAA--CTTCCAACATCCTATTCGGGGTTGATCTCAAGGTCACT------TAGGACTTGTCCTCGGTAGTAATAACAAAAGCAACCAGCACTCAAAACATATTTATTGCTTGGTACTA-GCTAAACAGTACCTGTG----ATTTACACAGTATCTCCAATGATCCTCACAACAACCCTATAAAaaaggattattatta-ttacctcTCTTCTATAGATGAGCAAACTAAGGCACAGAAAGGTAAAATAACTAACC---------------------------CCAAGTCACAGGGCTGG--------TAAGGGTA-----TCTAGCTG-----------------------------------------------------TGACTCAGATTT----------------------------------------------------CTGGCAGGCTGACTTGG--------------------------------------------------------------------------------------------------------GAGCGCAATTTCCTGGCAAGGGA--------------------------------------CACTT-----------------------------CTTCCTGCTGGCCTTGGAACAAACAAAGCGAAAAGTTAATAGCTGAACCCTTAGCAAATGCCAGGCGTTTTAGTAAGGGCTTTGCTTGCATTCCTCTGGCTCTTGAATGAAGAAACTGCAAATTACAAAGGCTACTTCTCATCCCCAAAGTCACATAGCTAGTGAGTATGGCAGAAACTATTTTCCTCTCAAGTCCAACTTTTCCTTCTTGAAGCATAA-AAGGCCCCATTTTTGGCTGATCATGTGGCCTTCTAGAGTTTAGGCTGCATTTCTGAGGCTCTGTTGAAGTAAGGTGTGTGCTCATGTGACTGATCTC----------TGGACAACACATAAGCAAAAATGGCACGCACAGCCTCCTGGAATCCTCAGCCTTCTCTCCTTGGCTCCTTCCTGCTGGTGGAATGCGGACCTGACA----GACAAGCTG--GAGGGGAGCCAGC-----------CAGCGTTGGGACGGTACCATGGCCACCAGCAGCAG--AGTGACAGGGAAGCAGGGGCCTAGATCTCCCAGG--TCCATGGAACCAAG

a score=22337
s chr3           104405291 945 + 160039680 aatgaacatAGGTTAGAG-TATGAAAGTGACTTGATTAATGCTCTAGAAGAGCCAGCGCTCCATCTTGAAAGATAGATGCTAAGTACATAAATAAAAGGCAGTGCATTGAGTCTTGTGATGGGGACACGAGCCCACTGCCATGGGGGCATGTAGAGGTGGGGGGGGGTGACTTACTAGATGCTAGTCAGGACACTTAAATTGAAGAGATGTCAG-GGAGTTGGGACTGACCTGCTGTTGGGAGCAAGTGTGACATGCCTGGTTCTCAGGACTCACCACCTTGCTACCTCAGCCCCTGGGTGC-TGGGATAGATAGCAAGTGTATATACCCCAATACATTGCTCTCTA-AGCCTCAATGTGGCTCAGAAATGCAGCATGTTTTTTTCTTGACCTAGTGCTTTAGAGCCTGATCTCTCATCACTGGAGACTCCTGGAGCCATGCCCTTGACAATCTAGAACTT--TCTGTGAAGTAGATGCAATACTATGAAGAAAAATGAGGGAACGAGAATCCCCAAGGCCAACCTCCTGACAAGGGACAAAAGGAAA-TAGAAAATTGAGAGGGCCCCACACTGGGCTAG---------AGACTCTTCAGCATTATAGTAGAAGCCA--TGAGTTCTGCCTGTAATGACTCTGTACTTGAAAATAGTGTTTCCAATGTGACCTTTCTCCCTGTACTTCCAACAGTGGAGCTGCTGTCACTGATAATAAAAGGTAGATGTGGCTATCCCTGGCTGTAGCCAATTAGAATTACCTTGAGAAGTCAACAAGGGTAACTTGGCTGCTAATGAAGGCAGCTGACATCTTGGCACTGGCCTACTTGCCTGATCATGAAGAAAAGGAAAAACTTATCCCACCGAATGGTCTCCTTCCCACACCAAGCACCTCCA-------TAACTACTATTCCATGAGGACCAGCTCTGAC-CAAGGCAATGTGACTCACT--GGGCAAAGGGGCTCC
s HiC_scaffold_1 114850102 866 - 233722169 AATAAACCCAGAATAGAAACAGGAAGAAGACTCAGCCTGTGTGTTGGAAGAGTGGGCGGTCCATCATGGAAG----------------TAAACAGA-GACAGTGCACTGTGTCCTGTAGTAGAGCCATGAGCCCAGTGCTGTGGGC-----CAGAGGAGCAGATGG---CCTCACTGCCTGCAGGTCAGGGTACTGGCACAGAGAGTGCAGCAGTGGAGCTGGG-----CATGCACGTGGTGATCAGTGCAAAGTGTGCGGGTCTT------------------------GTCCCCCAGTGCATGAGAC--------------------------CGTAGCCCTCCAGAGCCTCCGTCTCATCTAGAAA--CAGTGGCCTTTT------ACCCAGCTTTCTAGATCCTAAGC-ATCATCACTGGAGAC-------------CCTGTGTAAATTCCAAACTTCTTCTGCTTACTGGACCCGAGGTTGTGAAGCAAAATGGGTG---TGGGATCATAAAAACCAATC-cctcacaagaaagaaaatgaaagtggaaAAGCAGAAGGCCCCCATAGTGGGCCAGGATAAATAAAGATTCTTCAGCAAAGCTGTGGAAGCCAGATGCGTTCTGTCTGTAATTACTCTGCACTTGGAAATGGTGTTTCCAATGTGACCTTTCTACCTGTTCTTCTATCGGTAGAGCTGCTGTCACTGTTAATAAAGCCCAAATCTGGCTCTTCCTGATTGGAGCCAATTAGAGTTACCTCAAGAGGGCAGCTAGGGCAGCTTTGCTGCTAATGAGGGCAGCCCATGTGTCAGTGTCAGCTTATCGGCCCAGACGGGAGGGAGTGGGAAAGCTTAGCCCACTCAGCAGGCTCCTTCCCCCTCTCATGGCCTCCAGTAAGTGCACTTTCATTTCCATGAGTGCCAGCTTTGACACAAGGC-ATGTAGACCACTAGAGGAAAAGAGACCTC

a score=38132
s chr3           104407815 2908 + 160039680 ttcttttttgatgggcatgatgcccaatgggatttatgagaattcctg----tttgtggggtacagactgctgcagtcttagaagcagc-aagtgtactcggctgtgaaatcgtgtgtgttgtgcaccccatccatcaatataaatatcgtttttattatgctggaggaaagatt-aattatcttcccttcctctctacagaaaacatcacataatcattgaatatgaagaagtgatgaaagagtgttcatccaaaagaaatgta---gaaaaatatgacagtggtgtactagacagttaattaatacaaaa-tcctattatttctctttattttgtgatatttgtgacatttccccccactaaataaaggcttgtttt------caattctaatcttatattggtaattttgtattgttcttaaagggatccttcaa--catggaataagctttaagttcacctctggatcagtctttATTTATTCCTTACCATTTCTAATGGGAGACGCTTTTGCCTCTTCTCCTACCACATATGTGATATATGCCCAACACATGGGAGGCTCTGCACCAGTAATGAAAACACATGGGGAGTGGTGCAGATCT--CCCTTCCTATGCAGAGACTGGGAGA------TAGAGAAGATGCTG----AGAGAAGAA----------CTTCCTGGAGGAAATATTTCCTCTGAGAAACCTAAAATATGTAAGATGTCTCTGGATAAGGAGTTATAGAA-AACAT-----------AGGCCA--ATAGTGTGGGGTCTTGGGTTGGGACAGGCTCAGCAGCATATACTCAGTAAATACCTACTAAATTAAAACAAGTAAAGAAACACTGTGACTTGGGTCAGGGTTCAGATGCTATGGGAGAGATGAGGGG-TGCACAGCAACCCCTTCCCACAGCAGCCAGCAATAGAGAGAAGAAGAATGAAAGT----CAGGGTAGACTTGATGGAATTCCTGATGCTGACGTAGTGGTAAGCACATGCAAAGGCCCTGGGGTCCGGGAAAGAC-----CAGAGAGCAGCTCTGCGTGGCTGGACC-ACAGTCT-CGAGATTTGCAAAGGAGTTTTTGAAGGAAAGTTGCCAATTGAAAAGGTGGTGAAATATGATAAGTCTGGCAAGAA-TGGGGCTGGAAATGGCCACACCTCAAAAGTC-TCATAAGTCATGATGAAATGTGGGCTCTGTGTTGGATGCTATGGTGAGGTGCTCTCAGGGAATGAAATGACATACTCGGATCGGCAA----GGTAGAAAGACTGGGCCGA-----CAGAAGCCTGGGTGAGGGAGAAGAAGGACATGAACATCTCTGCTCAGCTCCCCTCCCTGGTGACAAATGCTCAGCAGAGAGGGTGTGGCACCAGAAGTTCTGAGGAACTCCGTGTGCCTGCTGCAG--AGGCAAGTAAGAAGACA------CATCAGGGCTGGG----GCCTGGCTG--------------TCCCTTCC---CAAAGCCAGCTGCTCTCACAGAAGACCCATGGTATTCAGTGGAGGGTATATCTTTCTGTATGGAGATTGCTGTGTCCCGG---TATGGTGAGTCTATGTGGTGTTTCCCGTTTGCTCGTCCCCTCCTGAATTTC-TGTCCACTGACTTCTCATTGGAATTTGCTATTGGGAACCCCACTTAAAAATGGACAGCAAGAGATTAGGATCACTGTGTTCAGTCCTCATGTCCCACCCCCATTAGGAGGCCCCAGCCTTGGCCAT---CTCAGATTCT-TCAAGACAAGCCATCTCTATATGCCCTTTCTTCCCAGTT-CAATATCTACTTCCCTTATCCTTCTGCT--AGGGTCTGAGCAGCTATGAATCCCCTCGCCAGCTACGGAGTCATC---CAGCACCCTT-----------------------------------------CTGCTTGAGGTATTGTAATGAGTGAGACAACTGGTCCTGTTGGGACCCTCACTGTGTCACACACATGCCCTCACCACACCAAGCTGAGCTGTCG-TGAAGTGATCT-CTCCTCCCTCACGTCAGGAAGTG--CCACAAGTCCACAGCCACCATGGCAAAGAGTCCTTCCACAG-------------------------------------------------------CCCAGCCTTGCACCCT-----------------------------------------GCACCCAG-------------------TGTC----------------------------------GGAAAACCCTGAGGAACCTGTCACCAAGTGGCCAATGACTAAGATCCCTGCTTCCCCAGAAGGAGCTAGAAACACCTGCCACATGGTTGTTCTCAAACTCACCATTCTCAAGTCTGTCTGCTGACCTGCAGCCATCGTCATGTCAC-CTGGGT-TAGGTGTGAA-----CAGGT--TATTTCACCATTGCAAgtccctcttcctcctccttgc---aatgtagaca--tgcagggcagggactt-ttcacaactgtctcccagggc-caagcccagtg-ctcagacatggtagttttgagtaagtacctgttgTCTGACAACAGACCAATGACTAGCCTCGGGTCATCTGTTAGCCATCTTCCTTCTTCCCCAAAATGAGGCAGGACCCCATGAGGCCAGGAGCCTTCAAGTTCCATATCTCCATCTCCAGCCCACTGGGAAGCATCCTTTAGCACTGCAGCTACTCCCAGTGGCTGTTTCTGGACCAA--CTATTTCCTC---TTCTACAGGCTTCTAAGGGCCTTGCCTCGTTAGCATCTGTTTATCAGAACTGACCACATGAATTCACCTCTTGATTTAATAGTAAGCCTTAATTTATGCTAAATGTTTACAAAGC-AACTTTTTAAagccggtgtggtggatcatggctgtaatcccagcagttgggaggctgtggtcgacagagggtggccatgaaccccaggtcacacaggactgcagagtgaggcactgtctcaaaagaagaaaaATAATCCGCTTCCCAGATTTCCTGCCTACAAAACTGTGAATAAAC---TCCCAGCAGGATTTGACCCAC--TTCCTGTT------CCTTGGGCAAGTGATTGG-TTTGTTTGTTGGGCCCCA-TTACCTCCCTGTGAGGGTAAGTCCATGCATCATACATGAACTTCATTAGTTATTTTTCTACAAAACAAGGTGGGGCTCTTAGAGACATG
s HiC_scaffold_1 114851818 2990 - 233722169 TTCTGTTTTCATGGAAATACTGCCAAATAGGACCTCTCAGA-TGCCTGCGTTTGTGTGAGGCTTAAACTGTAGTAGTCTCTTGAATAGCCAAGTATGTCTGGCTGTGAAATCACATATGTTATGCATTCCAGCCATCAATAATAAGCATAATTTTATTATACTGGCAGAAAGATTTAATTATCTTTC-----TCtatatagaaaatattataaaatcatttcatatGAGGAGCTGATGAAAGTGTAGTCAACCAAACAACATAGAAGGGGAAAGTAATGTAGTGGTGTGTCAGGAAGTTAATTAACaaaaaaattctgttatttttcttg--tgcctgatattTGTGGTACTTTCCACT-CAAAATAAAGGCTAATTTTGCACTTCACACCTAATTTTGTATTTGTAGTTT-GCACTTTTCT-AAGACAATCCTCCAAGCTTTCCCACAAAACTTGGAGTAATCCACGGAACAGACAGTCCTTATCCTTTGTCACGCTCTTCTGGAGAACCTGTCACCTCCCTCGCTCCCTCCTGTGT-ATG-ATGACCAACACATGCCAGGCTTTGCCCCCA----GAGAGCAGAATGGTGCTAAAACAGACCTGGCCCTTCCCACAAGGAGAGAGGGAGACCGGCATAGATAAGATCctaggaaagagaagaaggggaAGCTGCCTCTGCGAAACAGGATTTCCACAGAGACCCAAGGAATCAGTAAAGGTCAGCCAGGTAAGAGTGGAGGGAAGAACATGCTAAACAGAAAGACCAGCACAAGCGAAGGCCCTGAACTTGAAAGGGTTTGGca-caggtgctcagtaaatatctactgcattaa--taggaaaataaatactataaTCTGGG-CAGGGCCACGGTGCTATGGGAGAAAGCAGGAGAGGCACTG-AACCCTTGCCAAGGACAACTAGAAACAGAAGAATGAGGAATAAGAGTTAATCAGTTTAGA----ATGGATTTCGTGGTTTTGGGGGAAG---Aaacatgtgcaaaggccctgagg--cgagagaaacagagacagagagtagtTCTATGTGACTGGACCTATGGTGGGCTGGATTTGGAGAGAAG-----------AGACTGAGAATGAAAAGGATGATGAAGTTGGGTGGAACTGGCAAGAAATGATTCTGGAGATGGCCAGATCTTGAAAGCCCTCACACACAATGGTGAA-------CTCTA----GGGTGCCAGGTTGCGGTTGTTTTAGGGAAGGAAGTGATGTGCTAGGAGCAGCACCCCTGGTTGGGATCCTGGTTAGAGATGTCAAGAATGTGTGTGAGAGG-------------------------------------CTGGTGGCC------------------TGAGTCACGGACAGGTACAAAGAGCACTGTGTGCCTGGTGCGGTCGGATAAGCAAGATAACAGAATCACACCTGGGCcgggccaggccaggctggggcgcaattcctttcccttcctttcatgGCCA----TGCTCATGAAAGAT---TTGTTTACAGTGGAGTGTTTCTTTCCAGAGACAGAACTGTTTATGTCCTCGGCTTCTGGCCGCCCTGGGCTATGTGTCT--TCTGTCCACTCTCCCCTGCGTCCCCTATCCTGTGGCTTCTCAAGGAGG---------GGGGAATCCACAGAAGCCTGGAGGGCAGG-GAGCAGGGTCATAGCACCTGGCGCCCACTGCTTCCCCACA---GGGTGCCGCAGGCT-GGCTGTGCGCCAGGGTGCTCTCATGACACACTTCTCAGCTCTGCCCCTCCCTCCTGGTTTCAATATCCATTTCCTTCCCCACTCTACGTAAGGCCCGGGGTTGCTGCAGCTCCCATGGCCAGCTGTAGGATCATCACCCAACACCCCTTCTGACTCCCCCAAGCCTCACCACACCTTTGTTAGTTTGCTCTCCTTGATTTATTCAGATGAGAGTGATGTACAGCCCTGTTAGGACCCTGTCTGAGTCCCACACACCTGCTTCTAACACCAGGCTGGGCTGTTGATGAAATAACATGCCCTTTATTTAAATCAGGCCATGCCCCACAGGCCCACAGTGCACA-GGCAAAGAACATCCCCACAGCCAAGTGTGCCTCCTCCCTTTGGTCTGGCTCCTAGACTTGACTTTGGCTCAGACTCCCAGGCTCTGACCCTGGGGATGCCCCTACCAGTCTAGCCTCTGGGGTCAGGACTGAGCACACAGGAGCCAGGATGGGGCAGGATGTCATAGGCAGCTACAAAGTTCCTTTCCTGCAGCCCTGGTGACACCTGGAGAGTCCATCACCAGGTAACCCATGACCAAGACCCCCACCTTCCCCGGAGGGCTTGTTAA---CTGCCATGCTGGTG-TCTCAGACTCACCATTCTGGAGTTGCATTGCCAACCTGCCATCATCAGTGTCTCTCTCTGGGCATAGACATGAGTGGTCCAGGTGGTATTTT-----------TGGCTTCCCCTTTTCCATGCCAGGATGTAAATACCCCCAGGACAAGGGCTTGCTCATTAATGTACCCCAGTGTGCAA--TCAGTGCCTGAAAGACAGTAGCT---ACCAGGTCTTTATTG---GCCAACAGACCAGCAACTGGCTTCCCACGGTCTGCCTCCCATCTTCCTGCATTTCCAGAGTGG---------CTAACATGCCGCTGACC-----------CATTTCTGACTCTAACC-------ATGCCCTTTCTGATCTTGCCCCT-CTGTGAGGAGCTCCCTCTACAGTGAGCCCATTTCCTTGGGTTCCCCAGGCCACTCAGTGAGGGGTGCTATGGGGACTCTCTCA-------TGGCCTCATAAGTGTCCCTGCTG------------GCCCTCA---GCACTAGAAGGCTACAGGACTAACTTCACA------------TGAAACTTAGAAGAAATTTT-----------TGTTCTGAT---------GTAAGCTTAAACCTTAATTTatg------------------------ctaaaaaatttaaaagcaa----cttTCTAGATTTTCTGCCTGCAAAACTGTGAAAAAGCTTATCATGGATGAACTTGTCCTTCTATACCTGTTTGGTCACCTTGGGCAAGTGTTTGATTTTGTCTACTGCACACCAGTTACCCTTCTATGA-GGTAATTCCATGCACAATGTGTGGATTTTGCTAGTTCTTTTTGT--AAGCCAAGGTGGAGGTCTTGGAGTCATG

a score=25913
s chr3           104412141  897 + 160039680 aggcaggcaggcaggcaggcaggcaAAGAAAATGG-ATATTCAAAGTTATGGTTTCCTTGGCGATTTTGCC---AAGTTCTTAAAATGGTCCTGGCCCCTCCTGTTCTATGAAGAAGCACTACATTAGCTTCTGGTGGCTCCCAAGCCTCTTATGGAACA-AGAAATTTCCATCCTTACATCAAAGATGTCTTCCTTTAACATGTTACAGTGCCAGCCTGGGT--GGCATGTTGGGGCAGGCCCAGAATGAACCCTGGAGAAC------------CAGAGAAACAAAACACCTCCTTCAA----AAGCAGACAGGTCAGTAAGAATAATTTTTTAAAAGGCTTACTACCAACTAAC-------------ACAAAGGTGGGATGGAAAGAACCAGGAGAAAG-----GCCATTCTAAACTCTCTGCTCTGCACTCTTCCTCTTTATAACCCCGGCAAGAGCCAGCAAGAGGCAAATCCCACTTACAAGGACAGCAGAGACT--GTCTCCTCCCTGACTCGTGCCCTCACCATGCATCATAAATATTCCCACAGTCGTAAATATCCCTGATGAGGAAGCAGAAGGCTCTTAATTGGCTCCAAGTAATTTTATGGTGGAGGGTGCTGGGTGAGGTGCACAGACTGGGAAGAGGA--GGGGGAGGGGCGTCCCAGGAGGACACTAAAGTCTGATCTTC----------GATGCTGCACCTCTGTGTTAATTTAAACCACCAAAGTGAAAACTGGCTCATG-------AAAAGACCATATTCCTCCTTTGTCTCA--------------------------------------------GTTAAATCGTATGGTAGTAGATGTTCTTT---ATTCTATACCATTGGAAAATAAGAACCACTACTGGCATTTATT--------------AAAAAGAAATGTTAgaataataagcaag----------tgtctttgtgcaataacatactgtgtagcaataaaaat--gtggacttctgatcacagaaca---tggatggat
s HiC_scaffold_1 114856678 1009 - 233722169 AGTCAAGAATGGTAGCAGCTAGGGACAGTAGAGAGCATGTTTGAGGTGATGGTGTCCTCCACAatttttcccaaaag-----aaaataCCTGTGGTCCTTCCTTTTTTATGAAGAAGCATTTAGGTGGCTTCCAGAAGCTCGTGAGCTTCTTACTGAATGCATAGACTTCTGTTACTCGGTTATAAACATCCTCC---AGCATGTTATAGCTCTAACCTGGATAGGGCAATTGAGGgcagatttagaaaaaaaaaggcaagacaacCAAAGTattcagaaaagcaaaatgcCACCTTCATTCCTAACTGGA--GGTCAGTAATAAAAA--------AGAGTTTATTACCGATTAATCTACAGCCTGAATGCAAAGGTTagctagaaagaaaagaaagaaaaaaagagcaacccTGAACTATATGATCCTCGTTCTCCCT-TTTACAACCCTGGCAAAAGCAAG---GAGACAAATCCCATTTACAAGGACAGCAAAAGCTCAGCCTCCTCCCTGGCCCAAGGCCTCTCCATGCATCATAAATATTCCCATAGTCATAAATATCACTGATGAGGAAGCAGAAGGCTCTTAATTGGCTTCAAGTCATTTCATGGTGGAGGACGCCGGAGGAACTGCAACGCATAAGAATAAGACGGGGCGAAGGACCTCCCGGGAGGAAATTAGAGTCTCATCTTCTGCCTCTGATGATGCTGTGATGAAGCATTAATTTAAACCAGGAAAT----AACTGGCTTATGATCCACCAAGAGAAGCTCCTTCTCCACTGTCTCAGGGCTTGTGGGTTTTTCTATCTCAGGAAATCCAATTCCCTTTTGGCTGAATTTTGTGGAACTGGATGTTGTTTCTGATCAGCTACCACCGGGGAAAAAAGAATGTAATGAGGTTTTATTaaaaactttgtaaaaaaaaagaattgtaaggTGACAGGTAAGCTAGTGGTGATATATTCATGCATTAAAatactattcagcaataaaaattgATGGACCACTGATTACATAACAACGTGGATGAGT

a score=70246
s chr3           104424158 2851 + 160039680 CTTCACTTTGGGTTCCTTTGGCTGGATTTCCAATGTCTACCCTCCTCCTGGGAAGTACCATTCCAATGCCATTGTGCTGAGCATGTGTTTCTGGCTTTCCTGGGCTGGGAAATGGAAAACAGTCACTCATTAGCACCCCAAAC-----GCTTTTCAGAGGAAACGGTGTGATGTACCAGGACCCCCATGCatatttatttttaaaatatgttttttaatttGAAAGCACAGGGCCGCTGCAGGTCTGCGGGCCTTCTCACCTGCTGCGCCGTGTGATTAGCCAGGCCTTTTCTCACTGGGTGGCTCGGACAGCTAATGGACTCAGGCTCCCCATGTATGTTTATCTTCAGTTAATTAAAATTTTGCCAAATCTTCCTCACAGCCCTTGCTCACAGCAAGGCCAAGCCTTGGCTTGTGGCCCTGATCTGGTCTGGCAGACTGGATGGGGGCGGTCATCCTATTAAATATTAATCTAAGAAAGCAATCAGGCCTATGGGCTTCCACCCCTGAAGTTCTCCCGCTGGGAAGTCACAGATCAATGCCAGAGCTCAGAGCCTGTGGCAACTCTTCCTGCCAGGCCTTGGTCAGCATCAGACACGGATTTTCAGAACTGTTTGATGATAAATCTGGGCAGAATTCTGAGCACACACTCTCAAAAACTGGGGTGAATTATACCACAGGTCTGCCTTGGACAGGGATGTTAAGCGCAGCATGAACGTGCACCTCATA-------------AATGACGAATGGGCGGATCTGACAGCGTTTATTTGGAAGTGCTGGCTTAGGTAAAGACTCACAA--GTACCTCACACATCAGATGCCAGTTCTGAAA--CTGTCTCTGAGGGAAGGGGAAGATGAGGGCAGAGCTGACTCCTCAGAGCCTTCACTACCCCCTTTGGAGATTTGTGGAAGCTGCCGAAGTTCAC------CTTCATCTCTTCCGTTGCTCTTAGTCCTGTCCCTGCCCCCAGATCATTCCAGTGGGTACCTTCTGCTAGCAAATTTGGGAGACACAGAAATACTCTATGGGGCCccagagggtagtggcacatatctttaatccctgcacttgggaggcaaaagcatgcagatctctgagttcaaggtcagcctggtctacagagcaagtgctaagacagccagggctacacagaaaaaccctgtctcaaaaacaaaaAACAAAATAAAACACAAAAACAACAAAAAGAAACAGTGTAGTGTGGTTTTAATTTTATCACTCAGCAGGATCTGGCATGTTCAGGACCTGGGTCAgtgaccacattcagaaaggggatctttgcaaatgtaattagtttaaaaaggtgggccctggtccaaggactagtgtttttaggagcatagatagaagagacccagaggcatatgc---attgcca-atgaggagagaggcagagactagaatgatgtatctccaagtcaagcatctccaaggaatgtcagcagccacctgcagctggaaagcagcagagacagatcttcccc----agagtccaaaaactcccagccctgctgacacctggacccttagactcacacctctcgaaccaaggagaataaacatctgttgttgttaagacaccagttttgtagtgtttactgtgacaaccttagAT--GGTAACAGGC-CTATACC----ACTCTGGTGCTTCCTTCTCTA--------CAGACTCTGCAGA--CTGTCAGTCACCCTGAGCCC-TCCCCTTTCTGAGATGTTCAAGATAAAGAAATCCCAACTTCAGTTTAAAACGTGGG--ATAAAGCTAAGGACACGACCCCCTCACATCTC------------------AACTCTTACCAGGGATTCTAGAAGCACCACAGT----TCATGCTCTTGCCCAAGCAGCAGTCAGCGGGTAGAAGAGATGCTCTTGATAGGTAGGGATGTCACTCTGCCTCAGGGGCCTTTCAAGTCTCAT--GAGCTGTCACCACAG--ACAGAAGGGACAAGACACTGGCATGAACTGATACTTGCCCAGGC-------CAAAATATAGATTTTTTTTCATATTTTATATGAATTCGTTCTTCTTCTAAGAGGTGAGTGTTAGGA--GGAGGGTGTAACTAAATGGTAGCTTGTTAACTGAGTATGCTTGAGA-CATCGTTTCA--TCCCAGCATggaaagaaga--------aagggagagagggaaagaggagggaagaaggaaggaaagaagcgaggaaAACAGTTGGGCGTAATCTACTTAATCCTTCTAGAGTTGGAAGCTGAAAAGGAAGCTgagacagacagaaatacagcagagagacagacaaagacagact-aacaacaccatcagccaactggatcccaatgacttcaaccaactacttcatccaaccgcgggggaagccacgttcctctcagagcccttaagagacagtgctgagatctagcacc-tttggggctctaaagcaaacctgaatacatttaaaagaacagaaatcatacagcccgtgttcccaggctacaaggaaatagaaactagacatctatagcagaaagacagctagaaaataccaacacagctgtacaataaacagcacactt-acaataacacatgggtcagagatgaagtaacatgagaaatgtccaagcatctgaaataaaaca--------------aaaatgtgcaggatgcagcaaaagtgctgggaagctggcatgggacgggtgggagggaggatggcaccgaatgtgttttggcaacaaaggaatagt--aaaccagtcatctgagcttcGTTTAAAGTCAACAGGAGAag-----------------ctgggcacaagagca-------------------------tgcctttaatcccagc----------actgggagacacaggcctcatctacacagtgagttccattcagtgagggttacatagtgagaccctatctataaacaaacaaaca-------aacaaacaaacaga---agaaaagaaaT
s HiC_scaffold_1 114865394 2679 - 233722169 CTTGAATCCAGCTGCCTTTGCTtggcttccct-------ccctcctccaagGATGGGCCATCCCAGCTTTGTT-TGCTGTGTTCGTGTTTTTGGCTTTCCCAGGCTGAAACATTGAAAACTATTGTTCATTAATATCCCAGTTTTCCGGCTTTTCAGGGGAAACAACATGATA-AACAAGAAACcaacacatatttattttgaaaatatgttgtTTAATTTGAAAGCAAATGGGTGCCGCAGGTCCACAGGTCACTTCACCTGCTGTGCCGTGTGATTAGTGAAGCCTTTTCTCTCTGGGGGGTGCTGCCAACTAATGGACTCATGCTCCCCATGTATGTTTATCTTCAGTTAATTAAAACTTTGCCAAATCTTCCTCACAGCCTTTGTGCACAGCAAGGCCAAGCCTTGGCTTGTGGTGCTGATCTACACTGGCAGGAGGGATGGGGGTGGTCATCCTATTAAATATTAATCTAAGAAGGCACTCAGGCCTGTGGGCTTTTATTCCTGAGGTTCTCCCGCTGGGAAGTCACAAATCGATGCCAGAGCTCAGTGCCTGTGGCAACTCGCCCTGCCTGGCCTGAGTCAGCATCACATGCAATTTTTCGGAACTCTTTGAAGATAAATCTGAGCAGAATTCTGAGAAATCTCTCTTAAAAATTGGGATGAAATGTA-AACACATGTACCCTGGAAAGAGACATCAACCATCACATGCAAGTACAACTCACACCTCACACCTTACAATGATGAATGGATTaacttgccagcatttgttttgaaattatgagtCAGGTGAAGACTAGCAAATGTATCCTGTACTTCAGATGTCAGTTTTGGAAATCTGTTTCTGCCA------------AAGGTTTAAGTTGACCTCAAAAAACCTCCACTGCCCTGTCTGCAGAAAT----ACTCTGCC--AGTTTACTTCCTGCTCTCCCTCTTCAGTCACTGTTAATTCTATCCCAGCTGTCAAATAATTTCAGCAGATACCTTCTGTTGCTAAACTTAGAAGACAGAGAAA-----------------------------------------------------------------------------GCGTTC-----------------------------------------------------------------------------------------------------------------TATTGTGGGTTGAATTATGTACCCAAGAAAGAAATACTAAAGCCCATACCTGTGAATGTAGTCTTATATAGAAATAAGATATTTGCAAATATAATTAGTTAAGACAAGTGGGCCTCAGCCCAGTGACTGGTGGCCttacaggaagagataacagagAAACAGGAACAAACAAGAGGGAGCCATGTGAGGAGGGAAACAGAGATTGGAATGACACATCTACCAGCCAAGGAACACCAAGGAGTGTCAGCAGCTCCCAGAAGCTGGGAAGCGGGGTAGACGGATCCTCCCCTGGAAGCTTCAGAGGGACCAtggccctgctgacaccttga-cttCAGACT-----------------------------TCTGTTATT-TGAAGGCACCAGATATGTAGCG-----TATGGCAACAGCAGCCCAGGAAACTGGCACTTTACTCTCGGCCCTGCTGCGGACCACCTTAGCCACTTGCATCCTCTGTAGATCCACTCAGACACCCTGACCCCTTTCCCTTTCTGGGATGTCAAGGATAATGAAATCTGAACTTTGTCTTACAAAGTAGGGCATCAGGCtaagaagaaaatgttattaTAGCTCAAGAAATAATATGGGTTTAAGTCTTGCCAGTGATTTGCAAAACATCTCAGTTCAGTCACGTTCTTGCCAAAGCAGAGGTCAGTGAGCATAAGATCTCTCTTTGAGGATGGAGGATGTCACTCTGCCTCAGGGATCATC--ACCCTAATTCAGGCTGGCATCACAGATACACAGAAAATAAGATAGAAGCACAAATTTGTACTGACCGTGGCATGTATTCTAGAAGCAGAATTTTT---ACATTTCAGGCTTATCTTTTGTTTCTCTAAAAGTTGAATGTTAgggtctgaggatgtagctcagtagaagggcacttgcctaacatatctgaggccctgggttcaatccccagaactgtaaaaaaattttttttaa------------------------------------------atgttcactttTGCTCCTA----AATTAATCCCTTCagaattaga-------------------------agaaataaaaagaaaaaaagaacatagttGAATTCAATACCTCTATCAGCCAACTGGATATAACTGACATCTCTAGGCCActccatccaacaac---agaatGTACCTTCTTTACA-AGCTTATATGAGCATTCACCAAGAATAGACCCCATTTGAGTCTATAAAAcatatctcaaaaaatttaaaagaataaaaatcatttaatgtACTCTCTCAGTC--CAAAGAAATTGAATTCAAA-ATCAGTAACAGAAAGATAAGTGGAAGACACCAAAATACTTGGAGATTAAGCAACACTTTTCAAAATAACACATGAGTCAGAGAATAAATcttgtaagaaattttaaaatgttttgaattaagtaaaatacaacttatcaaAATTTGCAAGATGCAGCAAAAGTGGTACTGAGT-----------------GAAAATTTATAGCATTGAATGCa-tgtaacagaaaagaaatatctaaaaTCAGTAACCTAAGCTTCTACTTAGGaaactagaaaaagagcaaattaaatccaaaatgggcagaagaaaagaaataatgtggACTCAGTGGTATGTGCCtacagtcccagctactcaggaggctgaggaagaagaatCACCTGAGCCTAggaacttgaggccagcctggctaatatagcaagaccctataaagaagaaaggaaaaagggaaggaagaaacaaagaaaactagagaagaaGT

a score=26133
s chr3           104430898 744 + 160039680 AAACGTGGCTTTTTACATCATGGCTCCCTTCTCCCAGGAGAAAACAATGTCTGGGGTTAACCTACAGAAGCTATGTCCTCTCCTCTGCCTTCTCTAAGCTCTGTTTGAACTTCAGGTGCTCAAATGCCGAATGGGA-AGGTTTATGTGTTTTTCCTGAATGCCGGCAAGTTGCCCAGCACACGCCTGGTACCTGGAGTCTGAAGGGAGAAACTGAGATCCACGCCAACAGAGGCAGAGGACTTCA-CTCTC--------------AGCTAAAAAAAGAACAGGGCAATCTCCCTTACCTCCGAGGGACTTCTGTGAGCAGAAACCACGGGGAGCGCAGGAGAAACATCTGGAGTCTG----ACCCTCCTCCCT-CCCTCCTACAGTCTCTCCAGAACTTCCTCCAGAAGCCAGGGGAAAGGAGCCGCAGATCTCCAGCATCTACACACTGGTTAAGTACCAGCTCTGACCTAGTTCTGTTTCAAAGCACTACCCTCTCCTTCCTACCTCCCACAGACGCCCACCCAGCTGCCGAGTATAGAGAACACTGAGAAAACTTAGGCCAAACGGGGACCTGGGATGATAAAGCCTTTGAGAAAACAGCTGTTTGTTCGTTCGGTTCGTTTATTATCATGTTTTTGCTCCTATCTCGTTTGATTACAAAAGCCTGTTGGGGGGAAAAATAAAAACCCTTTTACACTTTAGAGGAGTCGGTGCTGGGCTCTTCCAACCTCCATTCCACTTCAAAACAACTCTGGAGAAAAGG
s HiC_scaffold_1 114873569 728 - 233722169 AGACCAGGTTCTTTGGACCACAGTTGCCCTC-CCCAGAGGAAAACAACGTTTGAAGTTAGCCTGGGGAAACAACGCCTTC--CTCAACCCTATGGAAGCTTCATTTAAACTTTCAGGGTTCAAATACCAAAGGGAACAAACTCTTAtgttct-cctgagtgctggtgagGTTTCCA--AAGAGTCTAGGATCTGGAATCTGATGCTA---ATTCACATCCCTGTCTACAG---CAGGTGACTTCATCTCTCTGAACTGTCTCTATGGCTGAAAAATGGA---GGTAATCATGTCCACCTC-GAAGGGCTGCTGTAAGGGTAAAACAAGAGAAG-GAAGGTAAAGCATCTGGTGCCTGTGgcatccttttcccttccctcctatggtttcttcagtgtttc-tcaagaccacagagaaaaggaaaagcaaatttcCAAAATC--CACACTGTTTAATGATCAGCTTTGACCTAATTCTACTTCAAAGcatttccctctctctcctgcctctcacTGCCTCCCACCCAGCTGCCAAGTATAGAGAACAC-ATGAAAACATGGTCCAAATGGGAACCTGGAATGTGAAAGCCTTTGAGAAAACAgatgtttattt-----gttcatttattatcATG-TTTTGCTTCTGTCTCATTTGATTACAAGAGCCTGC--AGGGAAAAAATAATAACCC-TTTGCACTTT-----AGTCTATGCTGGG-TTTTATAGCCATCATTTGACTTTGTAATAAC-CAGGAGAAGAAG

a score=15488
s chr3           104437308 1917 + 160039680 gtgctaatagagtcatgagtgaaaag------gatttgaccctgacttctaaTTGCCTCAAAACACCACAGACTGTGGGTCCCCTGCT---------CAACTCCAGCTCTCTGGAAGCAGAGGCTGGCATCAGCA-TCTGTTGAGCTCATCAGAGT-TTGTGACGCT-----CAGGTGT-----TCTATGTGCGTGAGGGACGGTGCATATGTACTTgatgctggggactgaaccccacacctcatagatgctaagctgctattcaaccactgagTCCTGTTCAGTCAGGTTTGAA------------------------GGCCTCCACTGATATTCAGATTCCCAAGAAAAATGAATGCTGTTCTCATCTAGCAGAGAGCAGCGTTGAGTGGCC---TGCCTTGCGGTCC-AGGCATGATAGCCACTTGCCCGTGAAGGGCCCGCTTGTGGCCTGG------------------------CCCAGCATGGGaagaagctgttcttgtatctcatcaaatacctcagctcagctatttgcctccccctgtgctgcttttgttcaaaaggctgtgagaaaagctg---------------gcacctttccctGGAGCTCTTGAAGACAATGGCAAGTCTCTCCTGACTCTCGGCAGCTTTTCTATTTCCGTAGTAACTGTCCTCCTCCATGATGCTGGTTAGCATCTTTTATGTTTATTTATTTTAACATTCGTTAagtgtttcaagtaccttaggctggcct-----tgagctccctatgtagccaaggatgcccctgaacttctgatcctctttc-ttgcctctacctttctagtgctggaattacaagcctgtgccaccatgcatcgatcggtttaagcatcattacgggatggacctcgggcttcacacatgctaagaagcattctatccactgagctacaggcccagccTTGTTAATACCTCTTATGCAGACCACACAGCAGTTCCTTAGTCCTCTTCTGACCTCCAGCCAGTCCGTCTCAGTAACCACAGTGATTTTCCTAAGCCGGCCTTCACCCCATCTCCTCCGCCCACGAGCCAAGCCGTCTACCTCCCAGTCAAAACCAAGCTCCTCC-CCTGTCCTTTAAGTCTTTCGAGAACCAG---------------AACCTCAGTACATCCCTCTCCCACACCTTCTTCAGGCCAATCATCACTTCCAAGAGATGAATAAAGGATATTACATAGTATGAAAATGTAATTGTGATTTTTTTTTGCACCGTTAATAGCTTCAAATAAATAATAAAAGATCCACTTTGGGCTCAGTAAGCTCTTTTGGATTCTCTTCATAGGGTTCCCTAGGTTGATGGAACCCCATCAGGGCCTGATTTTCATGGCAAAACATTTGTAGGAAATGTCAGGGGTGCTTAGCAATGC--GGAGCTCAGGGAAGGAAAC--TCTCCCTGTCCCTCCATC-ACTTAACTATAGCTTCTCTCTCTCTTTTCCAGGGTCTGCCCAGGTCTTAAACTC-----CAGAGCCAGCACC-TCCTTGTC-------ATCTCCATCTGAGTGTTTTT-----AATAGGGACAGG--TCTACAGGGACCTGGAGTATCAACATCCCCCTACC-TCTCCAATGACTTTT---------------------GGAGCCTGCCTCCC-------------TGAGCATTGCCCATTGTGGGCTAATTAAATGAGCATCCTTGACCAGTCAACCATCTTT-----------------AGAAACAGCTTCCTCTTCTCATTAGCAACTGGAACAGGTGCATATCCACCATTCCCAGGGCAGTTCCCCATTCTGCACCTGTGGTAAGCATGGCTG----TCAGAGCACTTGCCCCTGGGTGTCAA--GTGGTCAAGTGACAGGCACACTCAGAATTCTTCTCAACACAAGGTTATGTCCATCAGTCAGAGTGCGCAGGTGCCTGAGACATCCTTTCCTGCTTACCATCAGTGACCCAGCTGGTT-AATAGCTAATGTGTTTACTAGGCAAGCACCAAGAGTTTGAATTTCCTCTCCCTT-GTGGAACCCTAAACTAGAGTAGCATCCAGTTACATTCTGTCTACT
s HiC_scaffold_1 114887649 1772 - 233722169 gtactaataaaataaattttaaaaaacaactaaatTTGACTATACCTTAGAATCACTTTACAAcgttataaaatacaaatattcagGCTCTGGCAAGCAAATCTAATTTTCTGGA--------CCAAAATCTGCAATTTATTGAACTCCACAGAGGGTTCAGATGGTGGTAGtgggtgtgtgcatgcatgtgtgtgcatgggcTTGTATGTGCGTTCAGTGCAGGgggttgaacccaagaccttgtgACTGCTAAGC-ACCATTCAGTCTCTGAGCCCTGTTTCATCAGGCTTGAAACCCACTGCCTAGATAAGTACTAAGGCTTCCTTCAATATTCAGATTCCTAAAGTAAATTAATCATGTGCTCATCGAGCAGAGGGCAGCTCTGAGCAGTTGTGTGCTTAGCAGGCCGGGGCATGA-GGACAC-TGCTGCCAAACAGCCTTCTATTGGCCCTGTAACTATTCCAGGGTTTAATCCTCCCTGGCACTGGCTAAA--TACACTTG----CTAATAAATGTTCCATCCCAGCAACTTTCTTCCTGCC-CGCCAGCTTTGTTCTTAGCACTG-GAGAAGAGCTGGTCACTACCCTGTCAGCACCACCCTTTGGGG-GCTTGAGAGCTGCTTGAAGTC---------------AGGCTACTCTAATGTCAGTACCAGTGAAACACCCCTTGACGTT-----GCCTCTTCCACTCTTAACTGTCCTAGC-----TGAGGCTGTTCA--TACCTTTGTGTGGGCTACACAACAGCCTCCTAACTagt----------------cttctg-tcttctttctttacCCCCTTCTGTCTA-----------ACTAGTCT-----------------TCAGTCT---------------------------CTCCTCACCTGCT-------TTTTTCTTCA--------------------TGATATCAACATTTAT----------------TTCCTAATCCTGATCCTGACT--------GTGTGTCT-------------------------------TGTGCCACACATCCTTCA------------------TGTCTCCCAGGCAAA--CCAGCTCTTCAGACTGTTGTTCAAGGCCTTTCAGAGCCAACCAACCTACACTGTCACTCTTACTATATTTCTCTTGCTTAACTCTCTCAAGCCAAGAACCACT-----GGGCTGGCCA------ATTGTGTTGAATGA-------------------CTTTATATGTTTCCTAGACTTTAATAA-----------------------------------------------CCACAGAACTCCTC----------CACCCCAAAACTGCCTAAATTTCATTACGAAACACCTATA--ACGTCTCCTGGATATGCAGTGATTCATGGAATTCAGTTTGGAAAGCATTCTTTATGTCCTTTCATCTGGTTGTCAATGGCT--GGCCTCTTTTTTCTAGGATCTGCACAGGTTTTAAACTCCAACTCAGAATCAGCATTAACACTGTCTATTTCAATCGGAATCTGACTGTTTTTGCATGAATACCAATAAGCCTCTGTGGAGATATGAAAGCAGAACATTCCTCCATCATCCCTCCTGTTCTTTCTTTACCCCCTTTCTGAGATGGTAGCTTGTTTTCCCCAAGAGTTGAAATGCTCAGTGTCTATCATGATTTAATGAAATGAGCATAACCGACCAGTCAACCATCTTTGTTTTCCCAACTTCCAAATAAGCAGCCTCCTCC-----TTAGCAATGCAAGTGACTAAATATCTACCTCCCCTTGGACACTCCCTAATCCTGCACCTGTGACAGGCATTGTTGGTGATCAGAGAATTTG-TCCTAAGCCCCAAATGTGATGATGTAA-----------ACAATTGCCC----CAGCAGGCCTTATCAGTCGGTCAGACTTGGCACACAGCTGAGACA----GTCCTACCCACTGTCAATGACCTGGTCGATTAAATAGCTAATGTGTTTACTAG---------AAGAGTTTCAGTTTCAACCAGCTTAATAGAACTTAAAACTAGAGCAGTCTCTAGTTACATTCTATCTACT

a score=21790
s chr3           104441545 1348 + 160039680 TCTGTAAATATTTCTTCATGCTGGAAATGGTTCTGAGCACTCCTCAGTGCCAAGCTCTCGAACCACCAAGTTGAATTCA-ATGTTTGC-CCAAGCCGCTCAGTATTTGCTAGTGGTGACAAGCATG-GGAGGGACCTTCTCCGTGGACTGA-------------------------------GGGATGGCCCCAAACCTGCTCCTTTACC-CTGGAAGTGGGAGCTGCAAATGAGATCACACAGGACAAT-CAATTTGTAAAAAAGCATAAGGTGAGAATG----------GGGTGTGGAGAGAGGGTG-AGAAGAGGAGGGGGAA---------GGGAAACGATTCAAGGAAGAGAGA---------GGACACGGGCAAGACTGCAGCCTTGGATCAAAAT-------GAAGACCTCTGAGGG-------CCAAGCTGCG-AGCTCATCCTGGGCTAGGAGCCCAGAACAAGACTCCGGCCTCCGAG-GACAAAGCCTGGAGCTCTGGCCTCTCCCTCCCAACAGGCC-------------------------AAGCTGCCCTGGGCTTCATCCTGGCAGCGTTCTAGAACT--TTTG-AGCCATGCACCGCCCCGTACAGATTTTGAGTTACAGCCTGAGCCATGACAAAGGCCAGGCCTCTCGCC-ATTGTGCAACCG----------GAGAAGCCGGATTTCCTGTGAATCCCCTTACGTAAGGGTATCCCTGAGCAATGGTGGCCT-GGGTAGCGCCCTCTGCCGCCATTCTCTGTGCTGAAGCGCCACCTGGAGGCCAGTTCTCGTTCAAACCGCTGTGTAG----------TAGAGCCTCCACAGAAGGAAACAAGA-----AGATGCCTTGGAACAAA----------------AAGGCGCCT-----TTTGAAAGAGCCTCAACAGTTTCTTCACCCGCCCTT-TATCTATTGCTGATGGGGTATTCAAGAGTTAAATGACAGGCTTCTTAAAGGGACA-----------GGATTAGAGCCACAGTGATCTTGTCACTGCCTTTCTTAAATTCTAATATCTGGATCTGAAGAGCACACGTGAGGGGAAAACTGCAGTTTGCCCTGCATCTCGGATTCCAACCTCTTCATCCCCCTACTGCAAAATTCAGG-TTAGACTAACTTGTGTAGAGAGCTTGGCAGTGAGCCGGCCCCTT-CTCGGGAGAGCCTG-GGATGCTGCAGAGGTTTTTTAATCAGCTGCCTGGCCCTGGGCAT-GAACACACACCCTGGATTACTCAACAAGTAGCTGGGGGCTggggggggggggggggcggggACTACAAAAATAATTGTTTAAATTGAGCTCCAAGTTATTTTAGCCTGAAGAAATTCTAAGCTAGATGGACCCAGG----------AAATAGGGAGTATTCAACATAAAGAAAAGGGGACCAGGCTTCCAAACTGAGAAAGgttttgtcttgttttgccttttttgttttttggttt-----ttttttttgttttgttttgtttgtttttt
s HiC_scaffold_1 114891492 1456 - 233722169 tttttatgtatttattcattttataaatcattttggGCAC--CTCTGTGGCAAGCCTCCAAACCATTAAGTTGAGTTCCCATAGTTGCGCCAAGTTGCT----ATTTACTAGTAGTGATAGATAGGTAAAGAGATCTACCACATGCTCTGATGCACTGCGTCTTTAAAGCGCACCGTGTTGAGGGAGTGCCCCAA-CCTGTTCCTCCCCTTCTGACAGTCTGAGCAGTAAATGAGATCACACAGCAAAATGTGCTTTGTAAATAA-CAGAAAGTAAGAATGACTAGGGTAGGGGGGTAGGAAAGGGGTGTGGGAGCGGAGGGGGAAttaaggaaggaggaaggaaaggggcaagagagacaggaggggagacagagagaggactTTACCCTGGGAGCTGTCTCTGTTTTGGAGAACTCAGGTAGGCAGCACTCAAGCTTTGGAAATTGTCAGGGGCTGAGAACCTGAGTGAGGCCTCTGGTCACAAGGTGACAACAACTCAAGCTCTGGGCTTTCTCTTACAAGAGGCTCAGCTCAAAATGTGCTGCCCTTGTTAAGCTTCTCTGGCCTCTCATCTGCCAAGAACATAAAACTGTTTTGCAGCCCTACACAGCCCCCAATATCTTCAGTGCCCCAGCTCAAACAAC-ACAAAGGCCAGGCCTTCCGCCCATTGTGTAACCATCCGCTGTGCAGCGAGCCCAGTTTCCTGTGAAGCCCCTTA---------------GAAAAACAGGGGCCTCAGGTAATACGGG-TGCTGCCATTCTCTGTGTTGAAGTGCCACCTAGAGGCCACTTCTAGGTCAAACCTGTgttcagtttaaatttttaaatcctccat---aggaaacaagaaaaagagatgtCTTTGAACAAAGATAAAATGGCAATACAAGGCCACTAAGTCCTTAAGAGGACCCCATCAACTTCTTCTGCAGCCCTTCTGTGGGTTGTGGGTGAG-------AGGCTGAAATGTC-TGCTTCTCAATGAAACAGATTCCTCCATGGCTTGGGGCCATTATGAGAATGTTACCGTTTCTCACATACCCTAAAATCTAAATTTACAGAGCA-------------------AATATACATCCCAACCCCAAGTC--ATCTATCTCTTCTCCTTCCCTGAAATTAAGACTCAGTCAAGCATGGGAAGGTAGCTTTGCAACGGATAGGGTCTGCATTTTGGAGAGCTTACTGATACTGCTTACCTTTCTAGA--ATCTCCTC--CACTGAGCATAAAATACTTTTCCTGGGCCATTTACTGAGAGGTAGTTGGATAAGTCTACAAAAGCACCAAAGATT---AAATCGATAGCTcaaaataaccagtgggttaTTTTCTTCCGTGGACAAGTTAAGCTAGATGGATCCAGAGTCCCAGTTTAAGCAAGGAGTATCAAATATCAGGAAAAGTAAACCAGACTCCCAAACTGAGCAAGg----------------acagtttgtttgtttgcttaaaaCTTTCCTTTGGGTActtttgtttattcctt

a score=46639
s chr3           104443657 2634 + 160039680 aTACCCAAGCACAACCAGAGAACAAGCCATGAACCAAGGCAAGCTCTGGTTATCAG-------------------------AGCAGCAG-TATGCAGTGCCTGGGTG--CCCACAAAGGTGCCCACA----TCTTAATGCAGTCGCTGCTG-TTACTCTCCAGACCAACAGTTCCAACAAG-------------------------AGTCATGGTTGAACTTATTATAAGATAAAACGGTCACCCACCCACCTGGGGAACAACATGTAGCCTACTGGTTGGGTGAAGAACACAAAGAAAACAATGTCATTTATCCACGAACCCTCTCCCCTCCAAAATTAGACTTACAAAAGCTGAGCTAGGGTATAGTAGCACATGATTGTAAGCCTGAGGAGGGAAAATTGTGAATGCAAGGCAACCTGGACTGCTAAGATCCTACTAGACAAACACACAAACAAACCAAC------AAAATGCCAATGTGTTTGCTATCCT--AGTAGAAATGAGTTCATT-GGTGTCcacagtgaccttgtagaatga--------gggttatcatt------------------actgtcctgcagaaaagaaaacaaaggttaaaagaaatttagtaatttagcctaaaataccagtagccatgatgtgaactcaag-cattctggctccagaatatctgtggtcttccaagatgccaCCTTGGAACAAAGCCAGCATGCTACGTACTGAAGAGAATATTCTGAGAAGCAGTTCAGTTTGCCACGGAGCACTGCGGGAGTTCATATGCAGTCATGGGGGCTGGACTACATAGGGGAATGTCTGGGCTAAAGAGGATCTTCAGTCAGAAATGATGCCCACTGGTAGTCTCAACACACATTGCATTTTGTAGAGGGCTCAAAAAGTCTCAACC-----------------CTTCACTTCCCATATC------CTCATTTAAAGCAGCTGAGATCTCTGTCCTCTTTAAAATTCCATATGTGCATTTGTAATTATTGTTC-TTTAAAAGAGCCTTTCCAGGGAGTTAAGAACCACTGGAAA-AAACTGGGAGGAGGAGGGAGGACAGGACAAAACATTAGACGGGACAAGGACAT-TAGAGACTAAGTTGAGAATGGCTCAGTGTGCTTGAGACGATCTATAGGACTCCAAAGCTG-AAAGGGTTCCTAAGT-----------CAGGATGCGTGCCTGCTTCTTAAATATCAAGGGTGCCACCCAGACTCTCCAGTCAACAGCTTACCAAGATCGCAGTATGTGGGTCTAT-----GTCAGAACCTCAGTCCCACTGACTCGTGGGCC--AGTGCACTCTTTATTTCTTGAAGAGTGTCTTGTTTCCAAGCCAAATCCAACTAGGAACCCAAATCTCCAGGGCTAGCCCT---------------AGAAA--ACCAACCTTCCCCATTCTCCACCCAGAGCTGTGCA-GACAGGAGAGGGAGGAGGGGGAGA-CGCTCCACTTTGAAAGCCTGTAATGCATG--GGTGGC-----TGTGCTGAGTGTGGTGCTCCATTTGTTATCTGCATTAGCTGATGTAGCCCACTCTAGAGAA----AGCCAGGCATGCTTATGTGCATCCTGCAAATCTGGAACACAGGTACCCAAAACC--AAAGGGACTCACTTAAGCTTCTGCAACTTGCTAAGTCGGACTTGAGCCAGCTGCTTACTTTTAAAAGTCATGTGGTAAATGAAGGGCC-----CAGCTGACCAGGCAGGACTTCCGGGTACTCACCAGCTGTCTCACAGCAAGTGGGTGGTGTCTTAGGACTCCCACCAAGGATGGCAAA-TTGGAGCCCTTGG----AATCTTTTTGTGCTTTTGCTCAAATGCCCTTTCAGAGGGCCAAGGGAAGGGTAGGGAAAGCATAAGGGAAGACACATTAGGGTTT------GCAGAGAGAGTAAACAAGTCAGTGCT------------TTCACAAAACTATACATTGCCTTCAGGGGCTCAAAAAAAAATCTA------GGCTGATCCTACATTTTTCTATCACTTGTATTAATCATTTCAATAGCTAGTCTTAGATCAT-----GTATAACTCGGACACGAG--AGGACTTTAAAGAAAGTGACCAACTGATCATTTTT-------------CTTTCCTGGACCATGGAAAGCAATAAGCAGAGCCAG--CTGAGAGGCCTCCCTAAATTGAGGCTGGCCAAAGATAGAACTCGGGAGACACTCACAGCTGGAGGTGCGGGGTCCTCTGCAAACTTCTCCTGACCTCTG-GGTACTGACGTCTGTTGTGCTCGGGGAAACGCCAGGGAGCAGTATACACTTGGCAGATGAAGGCAGGTGACTCAGGGCTAAGAGAGGTGTGAGAGAAGGCTGGGGCTGGTG--GCACAGGCCCACGAGGCAGCATGCCTGCCAACATGATTCATGGCTTTCCCTCCAGACCTGCAATTTATTATGATTT-TGTGTTTCTCCAAAAGTCAAATTTTCTCAACATCACATGCTTGAAT-TTTCACCTTAAAAGTCCCATTTTA-----------------GTAG-----------------------AAGCAGCCTGTGTAGTCCCTGAACCTG-----TCCCCACCCCTC------------------------------------------CTGTGACA-----------------------------------------------------------------TGTATAAAGGACAAAGACACCCAGGCAGCAGCAATTCACTGTTGGAAGAGAAATGTATTTCTTCTCTGCCCTTGCTGTTTCTGGCATGGGACACAGACT----------CCTATGAAGCTTGCTCCAAAGGATAAATAATTCAAGCTACTGTCCCCACTGCCATTGCC------AGCCACATGTGCATTGTTTTCAAGAGTGAGGGATGTCACACTGGCTTTGATGGAGCATTTAGAAAAGAAATAAACTGAAGCTACTCA
s HiC_scaffold_1 114892990 2767 - 233722169 ATTCATAAGTATAATTGGAAAACAAGACACATAAATACCCGAGCTCTCATTATCAGCACATCCTCATTCATGCTGCTTGGAAGCAGCTGCTGTGCAGAGCCCAGGGAACCCCACACAGGCTACCACACAGCTTTGCATGCAGCAGCTGCTGGTCCCTCTTCAGACCAACAATGCAAACAAGGGGTTCTCTTTAGAGTAAACCCAGAAGGCCTTGGGAAAACTATTAAAAACTACAGCTGTTCCCCA---------GGGATAAAGCGTAGTCCACCAACTGGCCAAAGAGCCCAGAGGAAGCCAAGTTG------------CCCTCTCATTTCC-----------------------------------------------------------------------------------------------------CTAT-------ACCCACAAATAAACCAGATTTATAAAAATGGGA--GTGTTTGCTTCTCTTCCGTAGAAGTGATTCCATTCGTTGCTCAGAGTGATCTTGCAAAATGAATACCATTGTGTAACCATCCGCTGTGCAGCAAGCCCAGTTTTCttgtggaaaaggaaagaaaaattaaaagaa-ttcattAACTT-GCCTGGAAGATGAGTAGCCAAGATTTGAACTCAAAACGTTCTTGCTTCAGAACATTTGCAGGTTTCCCCATCTCCCTCTTGGTATGAAGCCAACATACCAAGTATTGCCGAGCATATTATGAGAAGCAATTCA---TGCCACAGATTGTTGCATGAATTCTTCTGTAGTCACTGGGGCTG-----TAAGGTGAAAACTGTAGACCAAATGTGATTCTCAG---GAAA----GCTGATTGTTGGTCAGTTCATACAATATACTTTCTAGGAGGCTCAAAACAACTCAAACAAAAAGATTTCTCCTGACTTTGCTTCCTATTTCATTCCCTTTATTGAAGCCATTTACTTTCTTTGTTCTCTATAAAATCCC-TCTaagcatttgtaaatatttttcacttgATAAAGTCTTTTT-GGGAGTTAAAAACCACTGTAAATCAACTGGAAGAA-------------------------------ACAAGGGCTCATTGGGGCAGTGGTAAGAATGACTCACCG--CCTGGAAGAAC--ACAGTATTTCAGAGCTGGAAAGGGCCCCCGAGAGCATCTCGTGACAGTATGCATGTACCCTTGGCA---------GACTACATCAAGACTCTACAGTAAGTGACT--CCAAGATCATAGTCAGTGAGCACAGAGCCAGTCAGAATCTCAGATCAGTTAACTCCCAGTGCTGAATgcactgttcatttcat-catagtTTCTTGTTTCTAAGCAAAATCCAGCTAGAAATCCAAATCTCCAGGGCTAGGCCTGAAATGAATCACTGGAGAAATTGCTAATGTCCCCCATTCTCTGTCGTGTGCTGTTCAGGATGGGAAAAcaagggagaggagagagctcCA-TTTGAGTGCCAATAACAGCTGAAAGCAGCCAGAATTCATTGAACACTGTGTTCTGTGCATTATAGGCATTAGTTTATGTAGTCCTCTCAATAAACATGTATGTAGGCATTATTATTTCCACTTTATAGA----GAATG-AGGTACAAAACACTTATAAGAAACTGGCTTATGCTCCCACAG-TTGCCA----TGACTGGAGTCCACTACTGGCTTTTGAAAAGCAGATGGTAAATGCAGGTGCTCAGGCAGCTGTCTCCACAGGAC--------ACTGA-CAGCCTCCATTTGGCCAGGGGATA-----CCAGG-----CAGCAGGTATGGCAAGTTTGGAACTTGTGGCTTCAGTTGCTTGTTTCTCTTACTCACAACCCATTT---------ACAGGAAGAGTA--------ATGAAGAAAGTAATACTTGAGTTTCATAGAGCTGAGAAAGAAAACAGGTTTGTTTTCTGAACCAGATATTCTAAAATCCACATCTTGCCTTCAAAACCTACAGAAGAGCTGTGCACAGTGGCGTGTGCTGTTTAAATCTCTCACCACTCT-----ATTTTGTTAGCAAGTCTTACACCATACGGAATTTAAATTAGACATGAGAAAGGAATTGAAAGAAAGAGATAAACCAGTCATTTCTCTTTCCAAGTTCCCTTTCCGGGACCGAGAAAACTAATGAGCACAGCCTGCTCTTACAGCCGTCCCTAAATTAAGGCTGCCCAAAGGTAGAAACACGGAACAGTCAACAAGGGAAGACACAATGTAGTTTCCACATGTCTCCCTACATCCATGGTATTA--GTCTCTCGTGCTCCAGGGAACATTAGGAAACAGTGCACATTTGGCAGGT-AAGACAGGTGACCAGGGTCTAGAAGA--TATGACAGGAAACTAGTGCTCACGGAGCAAAGGCCCAGGAGGCAGCACTCCTGCCAACATGA-TCATTAGTTTCCAGTTAGATCCTGAA-TTATTTTGATTTCTGACTTTCTCCAAAAGTCAGAAGTTCTCAACACCATACACAtgaatattttgttgttgttgttcttttttgagatagggtcttgctatgtagttcaggctgttcttgaactcaccatgtagcccaggctgtcctcgaacTTGTATAATCCTCgtccctcaacctcccaagtgctagaattacaggtgctCACCAACACACTCTGCCACACACTtgaatcttaaaatttaaattccacTTTAGCAAAAGCGTATCTGTATACTTCTGAGCCGGGTTGCGTAAAGAACAAGGCCACTGCGGCAGTCGTAACTCACTGTTGGAAGACAGTTG--TTTTCTCTCTGCATTAGCCGTTTCCGGCACAGAACATATACTTGTGGGTCTGTCTCTGGATCTTGCCCTATAGAATAAATAATTCAAACTA-----CCCTCTGCCATCACTGACCTGAACCACATA-GTATTGTTTTCAACA--GAGCAAT-TCACACTGGCTTTGATGGAGcatttagaagaaagaaaagttgcgactattta

a score=5837
s chr3           104448106 505 + 160039680 tccAAATCTGAGCTGTCAAGAAACGCTGGCTGAACAACGCAGCAGAGGTAGCAAATCCAACAGGCCCAAC--AGCCTTGTTTCAGGCATTA-CCACAAG-CCACATGACACCCACATTG-GCAATCCCTGTTCTTTGACGACTGACCTATGTATTTTCGTTTCCTTTAAGCCACCTTGTGATAAAATTTCCCTGGTAACAAACTACAGGCTTCCCATCCCAGACTAGAAACACAGCAGGCATGGGAAGCAAAT----------------CTGCACTCATCGGATAAGGAGCCAGGACATGGGGGAGGAT-GCTGAGCAGCAAAGTCCTTTCAGTTGCTG-----------------CTGGCCAGGGGTGGTTTTCAAGTTCCAAATATTCCATATCACTGGGCTAAA----AGGAAC-------CCTGAGATGAGTAAAACCAGCCCCCGTGGTCCCAGTCCCAGTCCCAGTGGCACTGACAGTCACAGAGGTAGCAATCCA-GAAGGCCAC---AGACTATTCCAGGTCACACACTGTACTTGTCATTTGTCCATAAA
s HiC_scaffold_1 114897205 534 - 233722169 TCTATCTTTGAGATTTCAAGGAACACTGACTAAACAAAGGAGCAGAGGTGACAGATGAAACAGACCTGACAAAGTCTTCCAGCAAGAGCTACCCACACGCCCACATCAGGCCC-CATGGTGCCAGACATCTCTTTCCCAGTATGATCCA-GTACCTCATTTTCACTTAACCTATCTTATAACAAGGTTTCCTGTATAACAAAAGTTAGAGAGCACACT----GGCAGAAAGACCGCTTTACTGAAAAGTAAACAACATGCTACTAAGGACTCTACTCAGCAAGTGAGGAGATACAGTAAAGGGGAAGGTAACCTAGCTGGAAAGTGGTTCTAATCATTGCTTTGTGATGAAGCCTTCTGAACAGAAG-----TTCAAGTTTCAATCATTTCATACCAGAAGATTAAAGATGAGGATTGGTCATATCCAAACTGCATATAACCAGTCCTCATCGTGACAGCCACTGTGCTGTT-----CAAAAACCACAGCAGTACTATTTTACGAATGGTATACAAGTCTGTACCAATCCATAAACT---------ATTTGTCCACAAA

a score=23229
s chr3           104453593 1017 + 160039680 CTGAGGTGGTAGAACAAAGGTACAGAAAACTGACACTCCTCAAATACCAAGTTAACCAA--ACCAGACTGGAAAGTATTGTTCTCAAATTCCCCCCT-TGCAATGGACACTTTCAT---------GACTCTTGAGCCCATTTGTCTCCCAGC--ACCTAGCACCTGGCACCACAGTGGACCTCAGGAAGGAC-AAGCAGGAGAGCATGCAGTGCCCCAGCCACCCACTCCCAGCCCAGCTCCATTCCAGGGCGTGGCCAGCATCAGGCTCA---GAAATTAGGACTTGGTAAAAGCTAGAGAAAAGCA---AGTTCATCATCTTAACTACTTGAAAAGTCCTCTCAAAAGGGCCCAAAC---AAAATACACTATT-CATTCCTATACTTTAGGCAAGAGAAGACCAGAGAATCATAATGTCTT---AGCTTTATTGA-----CATTACAGTAGACAGGACGAACACATGCTCTGTAAAATATACATTCTTATG--TGAGAAAATATAAAGGATACCAGGAAACAGCCACATGAG--ACCACTTGGCTTGTACTTCCCTTTAGAGGCGCCTTACACCAGGGCTGCTCAGCCTGACACCCTCTAA-TGGGCAAGAGAAC-AGAGGGTGGCAGGGAGTATA-AGTCAGGCA-------GGGGTGAAGAGGCGTCTCCAGCAGCCAGGTAATACTTCAAGGACACTTGGCCACCTGAAGATCAGCTCCTCTTTGAAAACAGTTACAGGTGCTACAAGATCACTTCACACCCAACAACATGCGCAGACAAGCCACGCTGCTCTTCACCT-----------------GATTATCAGGACTTCGAGGAAACAATATACAAATGAGAGGGAGAGGATCCAAACCCTAA--CTTACAGCACAC------------------CGGCCTTGAGAGC------ACTTGC-----------------CTGGGCTTGACTCCTAGG-----ACATCATACACCAACCCTTTCAC-CTCCCACCTTCTCACAATCCTGCA----------------AGTAATTCTTCCATTTTCAGATGTCCCCAATAC----AGCCTTACCTCAGGAAC----TTGGTACTTCTGCCAATGAACCAGACAGATGTCCAAAAAAAAAAAAAAAAAAAGG
s HiC_scaffold_1 114898883 1122 - 233722169 CCAAGATATTATAACTATGTTACTAAATACCGACATTCTTCACATATTCTATTAAAGATTTACCTAATTAGAAAACACTACTTTCAAGTTCTTCCTTGTGCAGAAAATACTCTCGCTGTCTAATGAACTATAAAGCATATTTGATTTCATACCTGCCAGGCACCTAGCACCAAGATGAActacaaaaggaaagaagcagaagCGTACACACTGCCTG----------TCCCAAAA-AGCTCTGTGGCAGGGTGTGGCCAGTGGCAGGTTTGAGGGAGTATGTGACTTGGCAAGCTTTACAGAACAACTCTTGTTTTAACTTGTTCAGTAACTGAACACTCC-ATCAACAGGATGCAAACTCAAAAATGTACCATTTCACTCCTGTACTTCAGACAAGAGA---CCAGAAGGTTATAATGTATTTTGAGCTTTATTGAAGACATATTACAGGAGACAAG-TAAACACAtgctttataaaatatacattcttaTGCATGAGAAAATATA---GATACCAGGAAAGAGCCACACTAACAGCAACTTGGTTTATACTTCTCTTTAGGTTTGTCTAACACCAGGGCTGCTCAGATAGATATCCTCTAGCTGGGGAAGGGgacaagagaagagaagggagtaGACAGTAAAACAAGTCTACGGACCAAGAAGACACAGTAAGTAGTCAAGAAATATTTCAAGAGCATTCGACCACTt---aatccatttcttt---aaaatagttactatttTTGCAAGATCACTGTAAGATTAAGATCAC---TAAACAAATCAAGCTGTTTTTCACCTTTGGCCTACCCCTTGGATATTATTAGAACTGCAAAGAAAC---ACATAATCTTGAAGGAGTGGGTCC-ATTCCTAACCCTTAAAACACACCCTCCCAAGGACTGGCGACAGACTTCAGGGCTATAGttcttgcctagcatatgcagggctctgggtttgatccctagtgtcacacaccacacacacacacacacacacacacacacacacacacacacacacagacatcaTCAACATGATGATTCTGGGGTTTTCAGATGTTAAGTATACTACATGTCTTAACTCAGaacttttgtttgtacttttgtCAATGAACCAGGAAGCtgtccaaaagaaaaagacatccaAGG

a score=65982
s chr3           104455875 2166 + 160039680 GCAGAACATTT-TTTCCTCCCCTGAGCATGTCTTAGACCGTTAAGTCTTGTATTG-GCAAGATAAATACAGCTCAAGTTAGATGGAGCAGCATCACCCTTGATCTA-GCTAACAG----TTCACAAAGGCAGCTCTTCACTCAAGTGGCACAATCCTCTTTGGTTCCTGGCGGGAACTG------------------------GAGAGCAGCTTAGAGCAGCTA--ATAAACAGTCTC--TTTCTATC------------------AGTAAGA--------CTCAGAC-ACACAGCCAGCACG-AGCAGTGCCAAGGGAGCAGGCTCTTAATGCC-----------TTGTCATACC--AGTAAAAAACCTGGAATACAGCCTAAAAGAAGGCATACAGTCTAAACA--------------GATGAGAGCACTATACATTTTAAATGTTCAAAGTGGAAA---TGAAGAAAACATGTTT--AAATAAAAAGCGAAA--------GTTTCAAAA------GCAAA------------------CAGTGCTGCTGTCTGAGGAAG---AAAACT-----TAGGTTTGAAAAAAAAAGCATGGGAAA---------------AAAATGTCAGAAATTCACCTGAACTTTCTGACAAAAAGCTAAGAAGCT--GTGAGTTTGGAACTCTGTATATATACAGTTACTTATAAATAGACACCTTTAA-------AAGTTGAGAGCAGGAAGCTGGTATT---------------------ATA-------CTCATAGGACA--GACTGAA----AGCACATGACATTTCATTA--GTGTTAACATTCTTTGTTTACATAAAGCTTTTTGCTATCAAAAATTCA-GAAAGCTGTTTGGCTTAAATAAT-ACTTGTATAAAGACAGAACCACACTAAATTGACAGAGTACAGGAACTTTTGTGTGATCTACTCCCAAGAGCACACTTCCCTTCTTA---ATATGCTACATTCGTGAAG-GAGACTGAAAACAGAGTAAACATAAAAAAGGCCAATCTTTGGTTTCCTTGTCATCAAAGTATTTTGCTGAAATAAGTCATCTT---CTGT---------------GCTCACAGGGCTGTGGCAACACTGCTGGGCTCTGGAAGAGCAAGACAAGAGGATCACCTGGCACTTGTA---AAGAGACAGTAAGTACAAGATGCACAGAACTTCAGGCATGAAGCAGGCAGTTAATTATACCAAGACTGAGTCTATGAGCACACAATCACTAAGTACCCTGCCTTTATACATACACGTGGTAACA---------CACAATTCTAGAA-------CTTTAAACAGAGTTTGCAGACCTCACTACACTAAGTTATATAAAATCTGTGATCTGGAGAAGCCGCTGCCCATACAGTAACCAGACAGACATTATATATAATTTGGGCATATCAAAAATATTTACACTGTATCCAACACACAAGGTCAATGAGTAGAAAAATTATTTATGAATGCACATATATTTACAATGACATCCCCAGTTA-TACAGACAAAACAAACCCACCACACACACACACACAAAGAATACAAAAGCCTTTGATCTGGTACTACCAGTTGGTGAAACTTAGATTCTAGCTAAAGACCTTGAATATCAAAGCCTCAGCAGCTCTTCTCTGCTCAACACCACTGGAGAATCCTTGTTATACTTA--GGAAAGCTCAGAAGATATCTCTGCCCTGTGCTTTTCCAAGCAAAGT-AGGATATCAAAGTAGAGACGCTTTCTCAGGACCATTCTGAGGACTGGAACAATCCAGTAGGCTAAGCAGCAATGA--CTCTTCATGACAGGCAGTGCATGCCTGGGCACATCCCGGTGGGG--ATCAGGAAGGACACCTGC-CCATGTTGTCTTCT----------------------GCCAGGGCTGTGCACTTTCAACGTGGTACACATTTCTGTGGTACACTTCTGTCAGCCACTACCTTCTCTTTGCCAGGTGTAAGCCCAAACAC----CAGAGCTACGCTGATGTGGTCAGATGTAACTTGAAGCAAAGAGAAATACAAATACTGACTTT------TCTTCTCAATTCTGAGGTAGTAAATA----ACTAACTTGAGTCTTTGCTCAGACTTCCTCCTCA-ACGGGCTTCATGTGCCCTCAGTACCATCTTGAATGATCCGAGTCCTACTAAAATCAAAAGCATGGTCATGTAACCTGCGGCAAGTCACAGGTGAAGAGCAATTTGGATCCCTCTCTGTC------------------AGCTCTGGTGACTCAAGGACAGGCTGCTGGGAGAAGGGAAG------TAGGCCCAGTTCTCTGTTCATGTTCCAAAGAGGCCGCTGAAATATTTCTGAGAATGAGAGTGAGACAAGAAATATCATCAGTGATAGCTGGAATTTCAACATTATTTTCCTAAAGCCTGATATG
s HiC_scaffold_1 114902213 2406 - 233722169 GCATAGTATTTGTTTCCTCTTCTGAGTATTTCTTAGACCACTATTCCtgctacagagaaaaataaatctggcTCAATTTGGAGCAAGCAGCAGCACTCTTATTTTATGCtaacaaatatttcatgaaagCAGCTTTCTATTAAAGTAGCATAATCCTCTCTGGTTCCTGTAGGGAACTGTGGAATCATAGGATATTATACCTAGAAGGGACTTTAGAGAATCTATAGTAAAGGACCTCATTTCCTAGCGAAAAATGGGCCcacaaaagtaaaaagatatGCCCTAGTCTACACAGCTTGTAAGGAACAAAGCCA-GGAAACGAAAAGTTAAGTCCAGTATAAACTATTGTCATAACTTAGTAAAGAGG-GGCAATGCAGGTTGAAGGGACTgatgtaatcgcagcactctgggagacagaggcaagaggatcataaagtttga--gcccagtctgggcaacctagtgagaccctgacccaaaataaaaaccaaaaacagaccggttttatagctcagtgtaaaggttcttggttcaattcccagtaccaccaaaaaaagaaagaaaaaactgattgtaaatgaacaaagagaaaaatggtaaGTCCTGCTGTCCAGAGAAAGAGTATGAAATTCAGTTAAACTTTCTGACAAAATGCTGAGAAATTATGTGAGTTTAAAACCCTGGAAATGCACAGGGACTTAGAAGTTTTTG--TTTAAGAGAATGAAGTTCCTAGTAAGAGGCTAAGATTTAGAAGACCTGAACAGCCTGTATATGGAAATCTGAAAGGACAAAGAATGAACTTTAGTCTATCACATTTCATTAAAGTGTTAA-GTTCTTTGTTTATATAAAGTTCTTTG--ATCAGAAATTCAAGAAAACTTTGTGGCTTAAACAATCAcatgtacaaaacaaaaaccattccAAAGCTTTACAGTACAAAAATTTACGTATATTCCAGTCTCAAGAGCACTCTTTCCTTCTAAGATATACAGTACATTACTAAAGAGAgattaaaatcaaat--aacagaaaaga----aatctTTGGTATCCTTGTCAATAAACTAATTTGCTGAAAACTGTTGTTCTAAATTGTTCCAAAACAATACTAGTTCATACAGCTATGACAA-ACTGTCAGGCTTT---ATGTCACAAAGGGAATCTTGCCTGGTACTTGTATACAAGTGACA--AACGATTAGGTAAATGAATCTCTATGCTTGAAAGAAGCAGTTAAGTATACCAagattgtgtttgtgtgtatgcaaTTACTATGTACCCTGCCTCTACACATATACTTCTTAACAGTAAGTTTTCAGAACTCTAAGCggtttttctttaaacaaagtttttatatctCACTTGACTAAGTTATATAAACTTTTT---TTGAAGAAGCTACTG-----ACAATAACTAgaca----ttatatataattttggcatatcaaaaatatttacattgccACCAACACACACAGTTGaagaatagaaaaattatttataaatgcacatatatttacaatGAGATCCCTAGGCAATAgggacaaataataataataata-----attcacaa-gAATACAAAAACCTTTGACCTGATAC---CAGCTAGTCAAACCTGGGATCTTGCCAAGGACCTTGAATATCAAAGCCCTGGT--CTCTAC-CTGTGTAAACCCACTGAAGGACCCCAGGTACACTTCTCAGAGGGCTCCAAAGTTATTTTTG-----TTCCTTGGAAAGCAAAGTTAGAACATCAAAGCAGTGA-GCTTTTGCAGGATCAATCCATGAATTAGGACAGTCCAGCAGATTAAGCAGCAATGAGACACTTCCTGATAGGCAATACACATCTGGGCACATTCCTGTGGAACCATCAGGAAACACATCTGCTCCACGTCTTCCTCTTCCACTTGTACATAAGTACTCTGCCAGTGCCACTTATCTTCAACTTCATACACT-----------CATGTCCGCCAGCTGCTACCCTTTCCCTGTCAAGTATAAGCCCAAACAAATAGCAGGCCTACCCTGGTGTGGTCAGATGTAATCATAAACTAAGAGTAAAGCACATGCTGACTTTGGGGTTTCTTCTGAATTATGAGGTAGTAAATACAAGATTAACTTGAGTCTCTGCCCAAATTTCATTCTGGTGTGGATTTTATGTGTTCTCACTACCATTTTGAATGCTCTGAGTCCTACTAAAGTCAAAAGCATGGTCGTGCAACCTGTGGCAGGGCATGGGGGAAGAACAGTCTGGTTCTGTCTCTCCCAAGTCCTCATTCCGATGAAGCTGTGGTGACTCGAGGACTGGCTGCTGGGAAAAGGAAGGACAAGATAGGCCTGGTTCTCTGTTTATGCTCCACAGAGGATGTTGCaatgtttctgaaaataaaa---aggcaaaa---attatCAGTGGTAACTagaagttaaaaattaattttctgaaacttaatgtg

a score=28482
s chr3           104461260 610 + 160039680 TCTAGTTGACACTAGTTAAT----GGCAATTATTCTAGTATACTAATTTG----TTTCCTGTTACATGC-CATGCTACTGATATAACAGAAGG---------GCAGATCAGGTGAAATTGAAACCAAAAGCTCAAAACAGAACAAAAGCACCCATTACCACTGCTCCTCTGTGAGAAGGGAAGGTTCT---CAGTCATCCTCTCATGGTTGGTGGGAAAGGCAGCCGGCTCTCTCTCTGCTGATGGTATCAGACTCTCCAGATTAGCAGCATCTTGGGGAGGATGTGACAAAAACGTCTCCTTGGGCATCTGGACCATGAGGCTGGAGAGTGCCTGATCTAACACATCCTCCTCAGCAATATAGGTATATGGACAGTACTCTCTGGTCCTCGAGTAGATGTTGGCATTGTCGTAACAATCTGAACAGATCACCCGGGTACCAGCGCCACCTAGTAACAACAAGGAAGGGCCCAGATGA-----TTTTCTGATAAGGAAG-AGTTTGGGACTAATCAACTT-TCTTCAACAGTTctaacaattactgcacaccttctttacaaaccaggtgagagtccaaggtctgtctgtgaatgagctcactcactcctcacaacacccctatgaagaagattttat
s HiC_scaffold_1 114907155 624 - 233722169 TCTAGTTTATACTAGTTAATAGCAGGCAATTATTTCAGTATATCCGTTTGCTTGTTTCTTGTCAAATGAGAATGTTACCTATATCATAAAAGGCAAGATGAAGTAGGTGAggtgaaagcaaaataaag----caaaacaaaactgaagcacTCCTTACCACTGCTTATCTGTGTGGAGGGAAGTTTCTTTTCACTTATCCTCTCATGATTGGTGGGTAAGGCAGACAGTTCTCTGTTGGCCAATGATACTAAGTTCTCCAGGGCAGCAGCATCTTGGGGAGGACATGACAAAAATGTCTCTTTCGGCATCTGGACCATGAGGCTGGACAGTGTCTGATCTAGAACATCCTCCTCAGTGACATAGGTGTATGGACAGTATTCTCGAGTCCTTGAGTAAATGTTGGCATTGTCATAGCAATCTGAGCAGATCACCCGGGTACCAGTGCCACCTAATGACAACAGggaaaagaatacaaaaacattttttctgttaAGGAAATAGTTTT---TCAATCATGTTATCACTGTCATTGCTAGCTATCTATGTA------TTTTATAAACTGTGTGAAGTTTCAATGTTT-TTTGtgaattaactcatttaatcctcacaatttTCCTTTGGGGCAGGTACTAT

a score=68612
s chr3           104462417 2028 + 160039680 TGAGAGAGACCCAGGAGCCTCAGTTTTGTCCTTCA--TCCCTGTTTAAGGGTAATGTGTTT---CTTTCTGTAAGACAGC--CTTCTCTGGTTAAGACTTTATAGACAATTTTCATTCTATTTTGCACAAAGTTAAATG-----AATGAATGTTTTA-TCCTAAAATATTGCCCA-GGCTAATGGAGAAACTATACACTGAACTATA--CCCAGTAATACAGGCTGAAATTGTAACTACGAACAGCAAAGTGCCTACCGTCAGTGCCTCTGTGTGTGTACCCGTTGGCAGGAGGCATAAGTTGCTGATGGCTGCCTGCCTCAGAGTTGCTGTAGCCTTCCTGTGGTTCAGACAATGTTCCTTGTGAAGACAAATAGCTGGGAATGTCTGCAGGCAAATTAAGCTCCTCTGTAA--AGAGACATCTGTAACTCTCAAACTCAGACAGCTGAAGTCAATACACAGAAGGCAATTTTATA-GTGTGTTCCACTTTGACAC--TGGCCTGG--AAATGGTATGGACTTGGGACCCCAACAGCTCTTCATACTTCCCTTAGAAACTTTTTTTTATTAAAGTTCTTCTCAGAGTTTCATTTTAGAACTATTACTTAGTctgcaaataca--gctcagtggtaaagtgcttgcctaacatgtacaggctgtgggttcagtccccagaaccacTGGCAAAGGGCTGAAGGTAAAAGGGTTACCAAAGGGAAAAAAAAAAAAACCCTAAAGATGAAAATCCTATCTACAGCTACATTTTCACAATCTCTCTAAATGGA-CTCCTTCTCTTGTGGATCCCGGGATGAGTGAGGCAAAAGACCAACTCAC-TCATAAGGGTTTGACTCTACAGCAAAACTATGGTAGAAATGAACTTTAGGCTCAAAAGAAGGTACAAAAAAACAAAAACACAAC---ACAACACAACCCagtgaggcatgattgactgaacctgtaatcccagcacaaagaggcagagggagaagggccggattatgagttccaggttatat-----acactgagatcttttttTGGTTTTTCGAGACAGCACTACTGAGATCCTTTTAAGAACAACATgggcataacggcacacaccttcaatttcagcactttggaggcaaaggcaggtagatctctgactttaaggccagcttcatctacagaacaagtgctgacagtcagggatacataaagaaactctgtctcaaacaaacaaCCAAGAAAATATACCTGTAATACAATTCTAGGAGGTAAATTTAGGGGTAAGTATATACCATATACACAAATTCTTAAGACTATTTCCCCAAATAGGTTCTACTATCTCCAGGAAGCTAGATATTTTGTCAGAAACACTTCCTAACATTTCTTACCAAGTAACCAATCACAGTAGTCCAGCTTTTTTTTATGTTTTACTAAATCCTAC-----ATT----CTTAAGAACATGCCAAGTGTCATCTGGGTACCACTTACCTGTGTTTGTGATGCTGTAGTCTTCATTTTTCCTTCTCATGTGGTAAATGACAATGACCCAGATCAAAGATGTGCCCACGACACAGCAGACCACAACAATGATGACAATGCCAACTGTGGTCCAACCATCATCCTCATGCCCAATGCTACTCTGAGAAGAGTCACAATTGGGGGATGAAATGACATTTAAGTAAATATGTCCCCGTTCTGTCCCAAGAGTGTTAGACATAAGGCAGGTATATTTTCCAGCATCTTCTAGCCCAGCATCTACAATGATGAGAAGCTGATTGGCTGCAGCAAAGAAGTGTCGTTCTGTTACTAGGAGTGGCCCATCATCCTTGGTCCAATTGAGGCGAGGAGCAGGACTTCCTCCAGCGATGCACTGCAATACCGCTGTCTCACCTCGGGTGACGGTCTTGTCCTCCAGAGGCCTAATAAACGAGGGTGTCTCTAATGGGAGAAGG---TTAAAAATACTGTTAGGAAA-TGTATAGCCTAAGTCCTGTAGAA-TGAGACTATGAAAAGTATGATGAAATGTACAGTTTAAT----------GAGGATCAAAAGA---CTCAGAACA-GAAAAGATCTAAATGTGAAC
s HiC_scaffold_1 114909302 1823 - 233722169 TAATACAGGTTTAGCAAATTCTGCTGTGTACTTCAAACCCTTCTTTAAGGACAATGTGTTTTTCCCTTCTGTAAGAGGGCTTCTTCACTtgttaagatttta-----------------attttgcatGTGGTCAAATATTTACATTGAATATTTTACTGTTAAAGTATTACTTAAGGTTAATGTGGAAACTACATGCGGAAACATAAACCCAAGAGGCCTGGGTGAAGTTGTAAACATGAACAA-AGAGCCCTTACCATCAGTGCCTCTGTGCATGAACCCACTGACAGGAGGCATAAGCTGTTGATGACTGCCCGCCTCAGAGTTGCTGTAGCCTTCCTGTGGCTCAGACAGCGTTCCTTGAGAAGACAAATAGCTGGGAATGTCTGCAGGCAGATTGAGCTCCTCTGTAACAAGAGACAACTGTAACTCTCAAGGTGAG-CAGCTGATGCTAACACTCAGAAGACGATTTTCTAAGCATATTCCACTGTGATACAACTGCCTAGGAAAATGGTATGGACTTAGAACCACAA--GGTATTCATACTTTCCCTA-AAACTATTTTACACTGGAGTCCTC-----AGTTTCACATTAGGATTATTACCAAGACTGGGGATGCATAACTCAGTGTAACAGCATTTGCCCTGCATGCACAGGCCccgggttcaatttccag------tagtAAGG------AGGGGTGGGGCTTACCAAAAG-------AAACAAACCCTAAAGTCGAAGTT--TACCTAGAGC--------CACAATCCTGCTGACTGGATCTTCTTCTCCTGCAGATTTCAGTGTGAGGAGGGTAAAAGACTGACTTAAGCCATGAAGGTTCCTGTCACTTGAAGTACTGAGGT----------TTCAGGC------------ATGACTGACCCATCAGGCAGCTTTCCCATGCTACCAAGTGGGACAG-------------------CCATACACAaaccaccagtgg--------------ttcaagctgGAGGCAACATCTAACACATTCAAATC--------------AGAGCCGCCACCAGTGAGA-----------------------------CACACAC-----ATTTCGGCCCTT---------------GTGAATATGT----------------------------------------------------TAAAGAAA-----------------------GAAGATGCAATAGGTA-ACAGTTCATAGAGTGCAGTTTGGGGGCA-gtataaattct-ta---aaatagttAAAACTATTTT---AAGTAGGTTCTGTTCTTTCAAGGAagttag-tattttaaaagaaaaacctccTTATGCCTCCTATCAGGTAATGCATCACAGTTCCTCAGTGTCATTTT----TCCAATAAATCCTATCCCATATTTTAACTCAAGTATGAGCCA-----CATCTGGGAACTACTCACCTGTGTTTGTGATACTATagtcttcatttttccttctcatGTGATAAATAACAATGACCCAAATCAAAGAGGTGCCCACAACACAGCAGACCACAACAATGATGACAATGCCAACGGTGGTCCAGCCATCCTCCTCATGCCCACTGCTGCTCTGAGAAGAATCACAGTTGGGGGATGAAATGACATGTAGGTAAATATGGCCACGTTCTGTGCCAAGAGTGTTAGACATAATGCACGTGTATTTCCCTGCGTCTTCCAGCCCAGCATCCACAATGATGAGAAGCTGGTTGGCCGCAGCAAAGAAGTGTCGTTCTGTCACCAGCAGTGGGCCATCATCTTTAGTCCAGTTGAGGCGAGGGGCGGGGCTTCCTCCAGCTATGCACTGTAACACGGCTGTTTCACCTCGAGTTACTGTCTTGTCCTCCAGAGGCCTAATAAATGAGGGTGTCTCtaacaagaaataatttttaaaaatcaagttaggCAATTTTATTCCCCAAATCCTACTGAATTAAGACTACTGAACCCATGACAAAATGAACACTTTCATATACTCATGGAAGGACTGGAAGGtgtttcagaaaactaaaagccTCAAATGAAAAC

a score=54025
s chr3           104465478 1977 + 160039680 AAGCATACCTAACACTGTGAGTGAGGCGTTTGCTGAGAGGCCTCCTGCTATATTCTGTGCCATGCAGCTATAGATTCCCATATCTTCTATCTTCACATTGGCAATGAAGAAGACATCATCCTCAGGCATGACATGCATGCGTCTTTCTCGGGCTGCAGGAAAATCAGTGCCACCATCCTTCTGCCAGGAAATCTGAGGTGTAGGGTGCCCCTCTGCAGCACATTCTAATCTTGCCATGGCACCAGTGCGAATAGTTAGATCCATTGGAGTTTTCAAAAAAGACGGCATCTCTGTTCCAAAAACAGTAC--AGAGAAAGTAGGCAAAAGGAAA-ACACACATGGACACAAATCTAGCAGGCAGAATTCTGATG--TAAAATGCACTATTTCTTTGAGAAACCATATTCTCTGAACTGACA----ACACAGCGTTGGCAACAGTCTTTCC-TACCAGCCCATCAGTATG------------TGCAGAAAAGTAATACTTCTAGAATACAAGCCATACCCAT-TCACCATGCTGATGGAAAGAAGGAAATCAGAAAACCAAAAGCTTTTTTGAATGAC--AGTTTAGAATTCGGTGCTTATTATTCCTCTTTCACTTAGGACAATCAAGTGATGCTTCCCAATCTAACAAGAGCAGATGTTAATAGAACCCGTTTTTGTTTTGTTTCTTTAATTATGTTTTTTTTAAACCTGATTTAGGAAACATCAGAGTGGGTTGTACAgctgaagcgttgtctcagtggtt------------------------------------aagagcagg-----tgttgctcttgcgggactcaggtccaactcccagcacccacagggcagcttacaac-tgtctgatacttcagtcctgggagatccaatgccctctgtaggcctttgtgggtaccaggcatgcatgtggtgcaaacataaatgaaggtaaaccactaatacccacaaaacaataagataaaATCTTAAAAAAAGAAAACAGAGCTAGAAATGTTAAAAAAAAAAA--AAGAAACACAGGCACAGGGCACAC---------GTACATTGC-TCTGCTGTAGCACAGGAGTTACTCAATCTCACAGTAACAGACAGACCAAGCTGCTTTAGAAAAGGTTTTACAACTACCAGGAG--AGCTTT-------------------ATTTTCAAAATGATTTTGGCTATATCCAGAGAGCTACAGACACGACTAGACCCAGAGATGTCCTAAACACCCTC--------AAGTGTAAACAGTATGAGAGAAAGGAAATCATACTTTTC---TGAGAATTGTGGTTTTGGAAAGAAA-CTGAGACCAC-AAAAGACTGTCTTTTAACAAACAGAAAAGGAAGTCAAGTATCTCCTAGGG-CAAAGGA----------GAATGCAGGCCAGT-GGGCACAAGTGCACCCCTTCCATGTGCCACAGTCA--CGAGAAAGTAACACTAAGGGCTCCCTCCAAACCTGGGGTATGATCCAATTTTCTTGTCAATTTACATCTAAAATGAT------------TTATAATTGAGACATAATTTAGATGTAAAAAATACTTCAAAGTACTTTT--TCCCAACAGCATAGCCAGAC--AGGCATGGTGATTATTCTAGAAATACA------------TTAAAAAAAAAAAAGCATTTTAAAAGTCCAGTAGCACAATTCCTTACCATTTACAGTCAATTTGGCTTTCTGAGAATAATTAGAACCAAAGTGATTAGTAACAATGCACTGGTATTTCCCTTCATCTGTGAAGTTCACACTGAAGAGGCGCAAGACACTAGTATATTCTAGAGCTTCTCCATCCTGCTGCCGATAACGAACAAAATTCTCAATATCCACATCATACAGGATCTCACTGTCCTTGCGCCATATGGTGGACATGGGTGAATCGCTGCTGCTCACTGCAGTGCACGTCAGTGTCACATTAACACCTCTTAATGCAATTGTGCTTTCAGGGTGTGTCCTTATCTGAGGCTTCAGAAAATCATCTAAAGGGAATAAATGCAACAGTGGCCAAGTCAGTTACATATTTTACCTCAAACCT-GATTTTACAACAAAGACTGTAACACTGTAAACTtct
s HiC_scaffold_1 114913893 1977 - 233722169 AAACATACCTAGCACTGTTAGTGAAGCATTTGCTGAGAGGCCTCCGGCTATATTTTGTGCCATGCAGCTGTAGATTCCCATGTCTTCTATTTTCACGTTGGCAATAAAGAAGACATCATCCTCTGGCATGACATGCATACGTCTTTCTCGAGCAGCTGGAAAGTCAGTACCACCATCCTTCTGCCAGGAAATTTGAGGTGCAGGGTGTCCCTCTGCAGCACATTCTAATCTGGCCATGGCACCAGTGCGAATAGTTAGATCCATTGGAGTTTTCAAGAAAGATGGCATTTCTGTTTCAGAAAGATCATCAAGAAAAAGTAGGCAAGAgggtatacatacacacacaca----------gcaaaataACAACTATTACAATGCTCCATTTCTTAGAGAATACATGCTTCCTGAAATAACAGTGGAAACAGCTTTAGAGATGATCTTTTTATCTCAGAACCTCAGAGTACAGTATTTTGAATGGTGACACCTAACTCTTCCAGAATGTACAACATGCCTATCTGATCATCCTGATGGAAACAGGGACAGCA-AAGGCCCTAAGTCATTCTGAATTCCTTATTTTACAACCTACTGTTTAATGCTATTCCCTTAC-----AAAGTTATATAGTACTTCCCAAAC--ATCAGCACAGTAGTCAAAGGAA-------------------------------------ATGCATATTGAAGGGGGgaggggattgagctcagcagcctaagtgcc-tgccaggGGTTTaacccccggtaccaaaaaacaaattaaaaaaaccaaaaaacaaaaaaactatgtCTTTAAAAGAATCTCAATTAAAAGCTCAGAAGCAGCGAGGCAGAGTAGTACACATCTGTATTCCCaacactcaaaaggctgagacaa---gaaaacCATCGtcaattcaagggcagcctgggttgcagt----gctcaaggccagcct------------gagctacaaagtaagatccta-----------------------tttcaaaaacaaaaatacaaaaacacagaAGCAAGACCCACCTTTTGGATGTATAAAGCCTAAACTGTTGCA-----GTTAACTCATTTGACAGGCA---ATAAATCAAGCTGCTGTG--AAGTTTTTTGCAGCCACAGGAAATAAGATTTCatagtatttcaaaaataaatttcaaaaatgattcagtataaatacattta---------ataactGGACTCAGAAATGTCCTAAATTCTCTATTAGATGGCTGTGTGAATAATTCCAGGaa---taaatttcagttttcagAGGAGAATTATGGtatgagaaagaaaactgaaaatttgaaaagaatgatCCCCAA--AGCACAAAAGTAGCTCA----TCTCTTAGGGTCACAGGATTTACCTCTTAAGTAAAGATCATTTAGGGATAAGTAGATAC------------ATAGTTAATCCAAAAATCGTTTCCCCTCTTTCCCTCAAATGTAGGTTTATTGTTGATCTTTTTGGTTAAGTGATTTTAAAACTGATCATGAAAAACccttctaaaaaagaaaagaaaaaaagccaggtAAGgcagcaca-tgcttataatcccacca--cttgggaggctgaggcaggatgaccacctgaactgtataatgagaccctgtttcaacaaaaaaaatca---------------agaataattCCTTACCATTCACAGTTAGTTTGGCTTTCAGAGAATAATTGGATCCAAAATGATTAGTAACAATACACTGATATTTTCCTTCATCTGTGAAATTCACGTTGAAAAGATGTAAAATACTAGTATGTTCCAGGGCTTCTCCAGCCTGTTGCCGATAACGAACAAAATTCTCAATATCCATGTCATACAGAATTTCACTGTCTTTGCGCCACACTGTGGACATTGGTGAATCACTGCTGCTCACTGCAGTGCAGATCAAAGTCACATTAATGCCCCTTAGAGCAACTGTGGTTTCAGGATGAGTCCTTATCTGTGGCTTCAGAAAATCATCTGAGAGGAAAAAATGCAGTAGTAGTCAagtcagttatttatttttgcttaaggttcaattttaaaacaaatactatgAAACTGAAGAGTTCT

a score=18324
s chr3           104468434 448 + 160039680 TGTTACAATAGTTAAGAGA---AAATTTTAAAATTT--GAAACAGAAATACAAACCACAGACAAAATCTTTCAGGTCCACATTCAAGATGCTTTGCCCCGCTAACCATTCAGGATGTGCACAGCTTACATTCACAGAATGATGGAAATTGTTATCCACCAGCCACTGAAGTAACCACTTCAAATGACAATCGCAGAGCAAACTGCTTGTGTTCAGAACACTACAGAAGGAAAACAAAGAAAAGAACCTTTCATTTTA-GCTTCA-TTATAGTTTTTGCAG---GAAAATCCTGCTACACATATATGCATTTACTTATCAAAAATGTTCA------CCTAATTATAATAAAACAAACAGACCATTAGCCTTAATAAAGTCAGCATTATAAAAAAAATCATAAAGACTG-----AAGGACAAGAGAATTATTTTAAATTAAAGACAAGTAAAGAGCCACTGCGATGGAATG
s HiC_scaffold_1 114917001 460 - 233722169 tgtaataaaattttagaaattaaaaattaaaaattttagaaccAAAAATACAAACCACAGACAAAATCTTTTAGGTCCACATTCAGGATGCTTTGCCCTGCTAGCCATTCAGGATGGGCGCAGCTTACATTTACAGAATGATGAAGGTTATTATCGATCAGCCACTGAAGTAACCATTTCAGATGACAGTCACAGAGCAAACTGCTTGTGTTCAGGATCCtatataa--aaaaagaggaaaattatccTTTGTTTTGCTCTTCATTTGAAGTTTCTTCAGTGTTAAAATTTGGATACAAACTTATGCCTTTTTCTCACCaaattttttgtttaatcttaactgTAAGAAAAAATTCCAACTGTCATCCTCAAT----Tctcca-aatgaaaaaaatca-aaagagggAAAACAAGAGCAAGGGAACCATTTTCAATTCAA-ATTGGCTAAGAGACATTACAACCAAATG

a score=15838
s chr3           104479757 507 + 160039680 aaCAAAAGAGAAAA----AATTACTTACAGTCCCTTTAAGTGAGTCTGAGAAAAAGCATTTTCTTGGATAGACATTATAGCATTGTTGTTCAAATCTCTGAAATCAAGAGAAATGCAACAT---CAGTAACCATTGCTGTAGTGAAATTACATAAATGCTTAAACGTTCATGAATACCTGCtgacatacagtctcagtatgcaaccctggttggccttaaacttgctatgtagagcaggctgtctcaaactcacaaagatttgcctgccactgcctc--ctgaggactgggattaaaggcaggccccaccatgcctagcACAAAGACTATACAGTGAGTGAATATATATGAAATACTTACAGATACTCAAGGGACTCAAGGCCAATGAATGCTTTCTGTGTAACTGACTTAATCCGGTTTCCTTGCAAGATTCTGAAATAAAATTAAATTCATAAGATATTTACCTACACAAGGTATAATTGTGTTAATGCTTGCATTGTGGTATTATGCACATTT
s HiC_scaffold_1 114935257 384 - 233722169 aaaaaaagagaaaatgtaagtTACTTACAGTTCTTTCAAGTGAGTATGAGAAAAAGCATTTTCTTGGATAGACATTATAGCATTGTTGTTCAAATCTCTGAAATGAAGAGAAATGGAACATTACTAGTCACCTTCTTCCCAGCTAAGTCACATAAACACTT-------------------------------------------------------------TTTTTA---------------------------------TGCTTGTAACAACCTCGGCTAACAGCAGAGAtta------------------------------tttatacagtga--aaatctATGTAAAGTACTTACAGATGCTCAAGAGATTCAAGACCAACGAATGCTTTCTTTGTAATTGACTTAATCTGGTTTCCTTGTAagattctgaaataaaaataaattcattaaactttcacctataaaaggaaaaaat------aagcttAAAGTGTTTTTTTATGTACTTCT

a score=21129
s chr3           104481687 925 + 160039680 CCATAGGAATACTTTATAAATAAAAAGTACCA----AACAACAACCTACTTGACAAACAAACAAAACTTTCCTTTCTAGGAGATGG------AAGGGTCAGACTTTCTGGCTATATAAAATAAACA------------TTACACAGTAACATTGAAAAGACAT-----TAGATATAAACA----TCACAGATACATACAACTTAGTGAGACTTTTGAGTCCAGAAAAGGCTTCGCTAGCATCTTCTATGGCCCATGAAATGTCATTGTTTCTCAAATCTCTGAAAG--TGTCAGGGAGAAAAAGGTTGTTAGCCAATATAACCACCACACCACTTGGCAGCATCCTGACACTGCAACAAGAAACATACATGTTAATTTCAGTCCTTATTTTAACAGTTATTTATGA------------------TGAAGACCCAGTCTTGCCTTTTAAAGGAATACTTGTGATAAACACAGAACAATTAATAAATTAACTAAGCagcagggcatggtaatgcacatctttagcaccagcacttaactgttggaggcagaggcaggcgcaactctgtgacttcaaagcaccctgatgtacttagtgatttccaagacagaacttctagagagaccctgcctcaaaaaTAGACAGATCGATGAATGGATGGATGAATAAATGTAGATAAGCAA---------AAAATTAATCTTCCTAGCTAGCCTTATCTGACTGTACTAGC-CAATTAAAAATTGTAGGCAGGGCCTATAAAAAAGGAA---GGTTTCAAGATAAAGGTGACAGATACAGCTTTCAAAGGTAATTTTAGAGTCATGAGATTCCTGAGTGCTCCAAGACTGCCTCTGTACTCCTAAACTTAGTACCTCAAAGAGAAATACCAATATAGAACTTCACAGCTCAAGAGCAATCTAACATTCCCCTTGAGGAGCAAAAATGATACGACTACATGCTAGAGTGCTCACTGTGTTTTCTTTAAAA
s HiC_scaffold_1 114935881 827 - 233722169 CCATAGGAGTGTTTTACCAATAAAAAGTGTCCTACTAACAACAAACCACT-GATAAACAACAAAGCTCCTTCATTAAAGAAAATGGGTCAAAACACTTCCAACTTTTTGGCTGTATCAAATAAACAATCTTATCATGTTTACA-ACTGGTCTTGAAAATATACCTTTGTAGATATACACAATCATTATGAATACacacaatttagtgagacttgtAAGTCCAGTAAAGGCTTCACTAGCATCTTCTATGGCCCATGAAATTTCATTGTTTCTTAAGTCTCTAAAAAAACGTCAAAGAAAGAGA---TGTTAATCAACACCACCATCATACCATCAAGCA-CATCCAG-TATGGCAATGCCATGTACACATGCTAATTTTGAAccttattttaa--attacttatgaagtattttaaattacttatgaAGACTCAat--tcccctttaaa--------------aaaaaaagaatttttaa--------------------gctttgtaataaatat------------------------gga-----------------------------aaaactgcttcttgtaagcaaagattt---------------------------------aaaCTAgcc---------------ttaataaataaat-----taagcaacCTGCTAGGAGTATCAATCTTCCCAGTTGAC---ATTTGATTTTGTTAGcattattaaaaattacagaCAAGTCccttcagaaagaaaaagggtTTCAAAATATAGG----AGATAAAGATTACAA-TCTGATTTCACACTAATGGGATTTCAG-GTTATCCAAGCTTCCCTCTGGGCCCTTAAAATGGCTGAC--AAAGAGTAATACCAATACAAAGCTTCACAGCTCAAAAGCAATTAAAAAAGCCTCCTGGGAAGCAAAAATGATACACCCATGTGTTAGAGTAGTCACTGTATCTTCTTTAAAA

a score=4885
s chr3           104487347 90 + 160039680 CTCCTCACTGGTAGTTAGGGACCGAAGTTTGGAGCCTATCACTTTCCTAAAACCATTTATTAATTTTGAATGTGATAACAACCAAGTGTC
s HiC_scaffold_1 114937409 87 - 233722169 CTTCTCATTGGT---TAGGTACCAAAGTTGGGAGACTACCTCTTTTCTGAAACCATTTATCAATTATGAACCTGATGACTACCAAGTTTC

a score=32763
s chr3           104490494 632 + 160039680 AAAAGAGATTAAAAACCAAACAGAACA---------AAACTTACAATGTCTGAAGATTGGAAAGAAACCTAAATACACCATCAGCAATGTGAGTGACTCTATTGTCCCCTAAATTCAATCTCTCCAGTAAGCTCAGACCCACAAAGGCAGATTCATCAAGGCGGGTCAGCTGGTTATAGGACAAATCCCTAAAAAACAAGAAACACTGAAAGTCAGGAATT----ATTGTATTAGCCCAATCTA----TCAACTTTACTGACACGCTAAGCTCAG-TTTTCTAACAAAAACT-GAGGAACCAGAGATTCCAGATCTCAT-AACTAC----CATGAGAATAACTGACTCCATTCTGCCGAGTGTTTCCCCCTCCCACGAAGCACCACTCAACACTTACAGTTCAGACAGTCTCTGGCAGAACTCCCATGCATCGGGGCTGATTTTTTCAATAGCATTCTGGCTCATATACAGTTGCTGTAACATTCGCAAGCCATATAGCCACCCCTTGTTCACTCCTGTAAGGTTATTATGTTCCAGTTCTCTGTACAATTATAGAG------AAGTAAGTGACTCAAAACAAGGCA-TTCAACACCAAGTACAGTTTTAAATTTCCTTTAAA-----CTGACAGACAGACACACCTTTGCTGAACTCTAGTGACCCA
s HiC_scaffold_1 114939030 664 - 233722169 aaaacaaacaaacaaacaaacaaaaaataaaaggatacacTTACAATGTCTGAAGATTAGAAAGAAACCTAAACACACCATCAGCAATATGAGTGACTCTGTTGTCTCCTAAATTCAGTCTCTCCAGTAAACTGAGACCCACAAAGGCAGATTCATCCAGGCGGGTCAGCTGGTTATAGGACAAATCACTAAAAA-CAGGAAATACGGAAGGTAAGGAATTCATTATGTTTTTGGGTcaacttaaatatttattatatttacatGATTAACTTAAAGCTTCTAATAAAACTTCTAGGAAAGAGGGACAACATATCTCATTCATTACTAGTCATAGGAATGATTTATTCCAACCTACTCTA-ATCTCAGCCTCTGATGAAACACTACCCAACACTTACAGTTCAGATAGTCTTTGGCAGAACTCCCATGCATCAGGGCTGATTTTTTCAATAGCATTCTGGCTCACATACAGCTGCTGTAACATTCGCAAGCCATATAACCACCCCTTATTCACTCGTGTAAGGTTATTGTGTTCTAGTTCCCTGTAGAATTAGAGAATGAGatgaaaaagtatttcaaaatgaaGCATTTCAATGGCAAG--CAGTTTCAAATCTTCGTTATACATTTCTCAGAGACCCACATATCTTTGCTCAACCAAAGTGATCCA

a score=28935
s chr3           104491399 542 + 160039680 CTAATACTTACAATTCTTCCATATTATTCAAGCCAAAAAATGCTCCATCTTTGAGTTTGCTAATTCCATTCCGCTGCATTTTCAATGAGCGTAAAGAATCAAGCCCTTGGAAGGTAAGGCCTTCTACAATTTTAATCCTGTTTCTTTTCAGTTCCCTTAACAACAACAACAAAAA--TGTACAGTTAAAACAGTTGGCTACAGTTGGCTGAGTTATTTTAACAGTAATTTAAAAGAAAAGC-TGCTGTAAAGGAAAACTTGTCTTCTATAACCCACCAAGTTTGCTACTCACAAGAACTGGAGATGAGGCAGCTTGAAGACCTTGGGTGGAATCATGCTAATTCGGTTCCGGTTCAGTTTTACCACTAATAAAGAATCTGATAAGTTGTCAAAGCAGCCAGCCTCCAAGGTGCTTATCCTATTATTGCTCAAATTCCTAAAATGA-CAAGGTAATAGCACAAGAAAAGAA------ACAGTAGTGACTC--CTCAAATCTAACTCTAGCTCAAACTCTGCTACAATACACAGGTTGACAAATCATTTAACTGCT
s HiC_scaffold_1 114940924 531 - 233722169 CTAGTACTTACAGTTCTTCCATGTTATTCAAGCCAAAAAATGCTCCATCTTTAAGTTTGCTAATTCCATTCCGctgcatttttaaagatcttAAGGAGTCAAGACCTTGGAATGTAAGGCCCTCCAcaattttaattctgtttcttttaagctcccttaa--------acaaaaagttttacaATCAGAAAACTAGTCTAC-------TCAAATGCTCtaacaataattaaaaagaaaaaaacactgtaAGGAGAAACTATTTTCTTGTAATCAATTTAtttagttactcacaagaattgGAGGTGAGGCAGCTTGAAGATCTTAGGTGGGATCATACTAATTCGGTTCCGGTTTAACTTTACCATTAATAAGGAACTTGATAAATTATCAAAGCAACCAGCTTCCAAGGTAGTTATCCTATTATTACTCAAATTCCTAAGACGAGCAAGataacagcaaaagagaaatatttaggaaaataaaaattctactaaAGCCCAGCTCTATACTTAACT--------ACACACAATTTTACAAATCAtttaactgct

a score=24836
s chr3           104493807 1044 + 160039680 TTCTCTGA-GCACTCTTTCTTTTAGGGTGAAGTAGGGAAATAAATAACTACAAAAGCCCAAAACTAAGCTTGTTTTACACACGCACACACACACATCAAAATTACCATAAACAACAGACACCGGAGGG---ATGGCCAGTGAATGACAGAAATGCATTGGCAGGCAGTGCACCAATTCCTGCCCAGCCTACTGCAGTTGACTCAATAAACTGTTCTTCAATTCATGAGTTAATCTAAGTCTCTATTTTACTTACAGGTATTTCAGTGACATTCGAGGAAATGAAGATGTCTTGATTTCTGATATTATATTGGAACTGAGGTCTAAACTCTCAAGAGCAGAATAAAGCTCGAATGCTTCTGCATTTATTTCTGGGATTAAATTATGCACCCTACAAAACAAGGATGATATTGACGTTATTGTCAGTGATGCAACCCAGGCCACAAAGATACTAAATAATTAAGATCAACAGTATAGGTACTTGTAAAAACAATGGCATGTACTGTTATAGTGAAGGCAGAGTGGTAATAGGTGTTGATTCTCCAAAACAGGTatttctatatatacatgtgtgtgtgtgtatctatatatatacacacacacacatacaAAATTCATAA-TTAAATAAGAAATCTGAAATCTTAACTTTCAGCAtctgcctctcattactgccaagtgcacacacagtcacacctgcatttccataggggtgtttgggatttgaactcaggtccttgtgcttgcagagccaagcacttGTATacacacacacacacacacacacacacacacCTCATAATTAAATAAGAAATTTGAAATCTTA---ACTTACAATGAAAGTAGAGTAATATTAGGTGTTGGTTCTCCAAAATATGGTATCTCTGTTAGCTCATTGTAATTCATTTTCCTAAGCAAAAGAGAAAAAAGTTTTAAAGGTTAATAATGGAAAT--TACCTCTTCAATTCTGGTTT-TGGCTAATAT------CTTAATATA---TCCAAATTTGAAAGGGCCTAT----------GACTGAGACTAAGTATATATAACTTTGAGAAATTCGATATTTT
s HiC_scaffold_1 114941986  872 - 233722169 TCCTctaatatattctttcttttgaggAGAAAGTGGGCAATAA-CATCCCCAAAAACCCAACTccaggtttatttcacttatgcattC--------CAAAATCACAACAAATA-CAGACATTTGGGGGTACAGGGCGGGTG-----CAGGAATA---------ACAAtg-------------------------agt------aataaa---------aataca--atttaaagtaA------ACTTTACTTACAGGTATTTAAGCTGCATTCGAGGAAATGAAGATGTCTTAATTTCTGATATTATATTGGAGCTGAGATCTAAACTCTCAAGAGCAGAATAAAACTGGAATGCCTCTGCATTTATTTCTGGGATTAAATTATGGACTCTACAAAACAAAGATTATATTGAAATAGCTGCCAGTAATCCATGCCTGGCCACAATAATGctaaataatcaaaattaacaatatgggcac-taaaaaaacaa--------------------aagaaaga-----------------------aaaa-----------------------------------------atatacatac------------taTTCCTAATTTAAGTGAAAgatctgagggctggggatatagca------------------cagcggcata------agcacctgccttgcaagcagacagtcgtgagttcgatccccagtaccaataaaaaaaaaacaaaac-tttatttagaGGTTCTGagagtggcaaaaaaaaaaa---aaaaaaaaaaagaaagatctgaaATCTCAATTACTTACAGTGAAAGCAGAGTAATATTAGATGTTGGTTCTCCAAAATATGGAATTTCTGTTAATTCATTGTAATTCATTTTCCTAGGCCAGaggaaaaacatatttaaaacttAAAGAAGGACATGCTACCTCTTATATTCTGGTTTCTGGCTAATATGTATTCTTTAGGGTAGGTGCTAAGTTTGAAAACGTCTATTATTCAGAAAGAGTTAGActaag-----ataaaaatgagaaattagagATTTT

a score=8807
s chr3           104497431 169 + 160039680 AATTCATAAT----TAGGTTACTTTAAAGACTTTAATATTGAATGAATAAAAATAACTTACACTTCTTGTAATGTTTGTGATTCCAAGGTGTTGTTCCAGTTAGACAACCGGTTATGACTCAAATCCCTGAAAGAAGACAGATATACTGAGCTTAGTGGTGGAAGCTAGACCT
s HiC_scaffold_1 114944487 166 - 233722169 AATTCACAATATACTAAATCACTTCAAa-----cagtattaaaaaaataaaaataacttacacttcctgtaaTGTTTGTGATTCCAAGCTGATGTTCCAGTTAGATAACCGATTATGACTCAAATCCCTAAAGAAGGACAAA-ATATCACTCTTAAT-GTGGAAAGTGAACTT

a score=17053
s chr3           104499612 590 + 160039680 TAGCTTCTGGGGAAGGTAATACATCTT----CAAATTATGTTGATGATTGTGACAGCTCTGGTTTAATATTTATTAAGTTGAA--GTCTTCTATGTAC--------------------------TACCAGATGAATGAGCACATAC----------CTGCAAGGCAA----ATATTCCTCACTGTGCTTATACGTAAAACAAGC---GAAAAGCTAATAACTTGCTAATCCAAAGATACATA---------AAACTAAAAGTTCATTTAAAATTTCATCCCATCTCTAGCAAGCAGTTTATTA-------GAACTTTCACTAAAGTTCATCATGAGTTTAAATTTTTAAACAATCTTTTTAAAAATTCACCTGGATGATTCCTG-TCATCTTTACAATGCTCAAGTAGAACCTAGCCCACCTAAGCTGTCTCCCCAAGAGACCTACTGCATGTTACAATATGGCTAGCGATAGGGGCACACTAGAGAAACACTACAGATCAACCTGTCTCCCTGTGCTGCCACAGGCAGTTGGCAAGTGCACGAAGATTTGGATGA---------CACAACTAAACAATTTGCTTGCAGTGAGATTCATGCCTGTCCATCAGT--ATCTTAGCCACTTTCGTTTAAAGAGCTTAATTTACATGGGGACAAAACTAAG
s HiC_scaffold_1 114945010 648 - 233722169 TAGCTTTAGCAAAGGGAAATTAATCTCATCCTAAATTATGTTAATAAT---GACAACAATAGTAACTAATTTATTGTGTCAGATAGTCTCCTCTATACATTATATGTACATTAGCTTTTACTTATATTAGCTGGCTAAATTCACACAAAAAGTACTTTACAAGGCGCTTTTATAATCCTCACTTTCCCACTATG-GCAACAGGCACAGAGAGATTAATAATCTGTTGATCCAAGGTCACAAACCTAGTAAGGAACTCACAA---ACTCAAAGTTCCAGCTCACTTCTGGCAAGCAGTTTATAAAATACAGGAGAGTCTGCTGAGGTTAGTCATGAGTTGAAATACTTGAATAGGCTAAAGAAAAATTCACACTGATACTTCCTGGTGATCTTTACAAGGCTGAGATGGAAACCAATACAA-TGAGCTGTCTATTCAAGA---------TATGTTACAATATGGTCAACAATAGAGGCAACCCAGAGAAGCAATACAGATCAATTTATATCACTGTGCCACCACAGGGAGTTGACAGATGCGTGCAGGTTTGAATGATGTCTCTATCATAGCAAAACAATTTGTTCTCAGCTAGATTCATGCCTGCCCATCTGTAAAACCTAACCACTTTCATTT-AAGAGCTTAATTTACAC-ATGACATAATTAAG

a score=13675
s chr3           104500893 436 + 160039680 TTCCCTTCAACTATCCCCAAAATGTATTTAGCAATCAATAGCCTTTCCTGCATTTTCTAACACTACAAATAT--GAGTAATAATG--TATGACTAATATG---TAAAGGCC------------------------------CTCCCCTCCCACTCATGCTA-----CAGGGAAGCAGCTGCAATAAGCAATGAATTATTAAAGTGCTTA-TATCATCCGGAGCCAGAGGTGCCATTACTGTGGTTGTGCAGTGCCATCAGGGTGTAAATTATTTACAGAATGCTCAGAGAAGTCA--------------------CAAGTTCTGCAAGCCAACTACAAAGAATTCCTGCGGTCACAGAG-TACAG----TTTCTTCTGCCTAGTCAGGTCTGTCCACTTCTGTGTCAATAATCTTTTCTTGTTTTCAAGAATCAACAGCATT-------------AACATCAACAATAACAAAGCCCCCAATAAGGGAGTCTTTTACAAAGGGTATTAGCACACACA
s HiC_scaffold_1 114949315 500 - 233722169 ttctctCGAAATATCCCCAAAATGTACTTAAGAA--------CTTTCCTTTATTTCCTAATACCACGAATATTTGAGTATTTATGAATATGACAATTATGGAGTAAAGGTTTCAGAGACGGCTTTACCTCAGTGTTGTAAACTCAGCTCCTACTCATTCTAATCTATAGGGATACAGCtgtaataaatgataaattattaaagtTCTTAATATCATGTGGAGCCAGAGGTGCCATTAATGTAGTCATGCAGTATCCTCAGGgtataaattatttatagaatGTACAGAGCAATTGCAACAGCTTGAGGAGCAAATCAAGTTCCACAAGCTAATTGCAAAGAGGTCCT--GGCTGCAGAGATGCAGGGGTTTTCTTCCACACAGGCACATAACCACACATCTGAATCATCAACAATTTGCT-TTCTCCAGAATCTGTAACATTAAAAGGCCAAGGGAACTTGAACAGCA--AAAACCTCTGATAGAGATATCTGCTACAAAg----ttagaagataca

a score=46849
s chr3           104510155 2590 + 160039680 TCACTGAAGGATCTTCAAAAGCAGGCCATGTTTACTTCAATTA--GTTACATTAAGTCAGACTGTTTTTAAACCTATGTCAGATTCAGTCTATCATAATCAGGTAGCTGTCTCATCAATTTCTTCAAAAAAGGCACCTACTGTATAAAGAAGATGCTGTGCTTGGATTAATTCAGACTATGCTAAATGATAATACTAAAGTCTGAGTCAAACCAGAATAAGCCTCAGATATAACCACCACAA-AATGACAGGAGCTGTATTACTATATTGCAATTCTATAGTAACTGTAGCAGTTACTAATTTTCTCAATGAATACAGGA-ATTAGCTTCTTTCCTATCTATGCTAACCTAT----AAATACGTTCTGCAAATGTATACTTAACCTCTGCA-ATACAGATGTT--------------CTACCTGTATTCTTTTTCCATTAAGAACCTAACCAAT-CTTTGTATTTTAATTATATCACAAAACTATTTTTAGTGATAACTCTTTTTCAGAGGTAACTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAG----TCAATTAATAAGCACGTTGATCAGTTAGTGGCAGAGACATAACTGTATGTTGGTGGCTAAGAAGTCTCAT-AATTGCAGCATTTAATACCTACTGTTCTATTTAATGCC----TACTGACTCAGAGCAGT-GAGCTCTCCAAATGCCACTAGCTAATACAAGTTTGTCAGGATTTAAAG-TCAGAGCTAGAGA-----------ATCCACTCGATCACTGCACTGGATTCTCATACATAAACAAAGAGATCTGAAATGAAGGTTCTTTAACTCA--AAGGAACATAGTGAAGACAAAGTATCGTGATTTGGGGAAAAAAAATCTTTCCCCTCTTTAAACTGACTACTAAAG------AATAACTGCTCTTACAAAACATTA----------------------------------------GAGATCAGC---------------------------------------------------------------AATGA----------------TCTTCCTTAG-------------------------GCATGCAGAGGTTTTCAACCCTATCAAGAACTCAAGTATCAAAACTGAAACATACAATGAGCCGATGGGAGAACTGGGGACAAAAGAGAGATCCTGTATCTTTGG-------------GAGAGATCGTGTTTGCATCACGTGCCCAA-GGACCAGTCAAGCTGGAATTTTaaaaaaaaaaaaaaaaaaaaaTGATGCAGCCCAAAGAGGGCTTTGCACTTGGACCCGACCCACAGCCATCCAGAGTCTCAGCTGTGCTGCTCAGGACCCGTGAGTCCAACATTAAACATC----TCCAGCCCGGAACGTCACAGACCCCAG--------ATCTTAACCCCTATCTTCCCACGAGTACCGGGAAACCCTAACA-----------TTCAAAGTTC----------ACAATCTCAATAAGGCAGCTCCCTT------------------CCGAACTCGGTGGCGACCGCGCCCTGG----------------------GACCCTCTACTCACAGGCTGGAGATGTCGGAGGGCAGCGGGCCCGACAGTGCCCTCCAGCTGGGCGCGGGCAGCTTCCTGCGACTGCAGTCCAGCAGAGGAAGACGGCAGGCGCAGGGCGCCGGGCACAGGCCGGCTCGGGCAGCGGGCAGCAGCCGCAGCGCCTGCGCAAGGATGAGCAACCGTGCGAGGGGTCCCAACCCACAGCCCAGGCGCCGCTGCTCCCAGATGCCGCGGGGCGCGGCCGCCATCTTCCCC-TGGCCGGGACCCGCTCGAGAACAGCAGCTAGCTCAGAGAGTCGGCTGAGGAGAGATGCCCGGAGGCT-----AAACCGCCACCCGGAGCCCGGGCTGTCACTTGTCCCCTCTCAGAGCGGGCGAGAGGAGGAAACGACGCTACCGCAGGGGAGGGGGCGGCGGTCGGGGGCGTAGAGCTGAAACCCTGACAGACACCGCTCGTCCGCCCCGCCCCGCGACGCAACGTACTCACGCTCAGCAGCCAGCCAATCGGAGCCCCGGGATGAGGTTGCGTCGGAAATTGGGTTCTGAGAGAGGCGAGGCCTACGATTGCCCCGCCC-CCTAGGAGGCGAGCATTACA--------GCGGCCCTTTCTCCTTTTCCGAGCTGCTTCTGCAGTTCTGCAGCTATTCCTCCGCTTGTGGGCGCACTAGGGCCTTGAAATAGAATGGAAAAAGCGAAACCC--GAAACGCCAAATCCTCACTGCGGTTG-ATCTGCAGTAGTAGTGAAAAAAGACCTATTCTG--TAGGCTCCTGCAGAAGGGAATGGCACAAGGGCTGCATGCCAAGCAGCAGCTGCAAATAAGTGCGCGA------TCTAAACCTAACTTCGACCACATCAGTCTCCGGAGCCCAACCAGGGCGGCCTCTGCGGCCGAACTCCCTGCCCTGAAAAAATGTGGCA-GTTGGTTCTCCCGGAGCATGGCACGCTGTCA---CTGTGAAAGGACT-TCAAGTTCCCATTGGCAGAGGCGCTATTTAGTCAG---TACACCTCCGGCTTCTACAGTAGCCTGGAGTTCAATAATTGT----CTCTAAA--------------GAAAATTCTTTCCTCGATTTGGGAAAATATTGTTT--------CATCTTCAGAAGAACAAGTGGGACAAATAGATAAAACGTTGGTTTGAGGATGTGGGTTTTCTGGTTTCTGTTTGAGGTTTTTGAGCAATCAACAAAGTTAAGAAGACTGGAAGGAA----------ATTATCCTGAAGTAAAAAGACTTACTGGGAACAGCGGAATCTAGCTACC--TTGTGATCTCTCCGCTGTGTGTTACCTACAAAA---TGAGTAAAAAT--GAAAATATCAGTAATGGTTCACT
s HiC_scaffold_1 114967726 2930 - 233722169 TCAATGGAGGATCTT-AAAAGTAGACCACATTTATTTCAATTACAGCTAAATGAAGTTGTATTGTTTTTAAACCTGAGCAAGATTTATTCTGTCATAATCAGGTAGCTGTGCCAAGAATTTCTTAGAAAAAGGT-TTTGCTGCA--AACAAGATGC-------------------GTAACACTGCATGaggatagaaatttttaaatttaatttgagtGA-----------AAGGACCCCATTAACTACAGGTGTCgtactgtaaaaata-aattgtttagtGCATTTGGT------TAATTTCCTTAATGAATTCATAAGacaattttctttcctatttatgctaacctatttttaaatat-ttgtgcatatatatatata---tatatatatatatatatttgtctccCCAGTGgctatttgttttccatttccaaTGAAAATCTAAACAGTTCCTCACACTTTAATTGCACTCTAAGA---TGTTCAGAGATGACTTTTTTTCAGagatgacttttgtttttgtttttcgagacagggtctcactatgtagtttggatTGGCtatgaactctctatgtagcctaggctggccttgaactcacagcaatcctcctgtcccagcctcctgagtgccgggattacaagcatgtgccaccacatttggATAGCAATAACTTTTTGTTGGGACAACTCTATTAGAAGCCTGTCAATTAGTAATTGTGTTACTC-GTTAGTGGCAGAGAAATAACTGTATGTTGGTAGTTAAGAATCCCCATTAACTGCAGTATTTAATACCTACTGTTGTTCCTAAAGCCACTAGGTTGACTCAGACTAATTGAGCTCTTTAGGTGCCACTAGCTAATAAAGGCCTCTCAAGATGAAAAACTCAGCAGTGGAGACTtcagaattcattcattcaattagTGTACTTCCCTAGCACACATAAACA--GATTCCTAATTTTGGGGATCTTTgccaaagcaaataaaatatttaacgcATCACATCGT---TCTGAAAAAAGTGGTCCTTCCTTTCCTTAGACTGTACATTAAAGCAACTCAACAAC-GCTATTCCTAAAGATAACCATGCAGCCAGGTGTGGAGGCCTGTAATCCcacgagtttaaggccagcctgggctacaaagtgaatttaaggccaacctgtaCTCCACAgcgagaccgtctcaaaaaaataaatgaataaaaataaagatattcttgGTTAGTACTGAATCATTATGTGTCAAAGACACATAATGAAATTTTGAACCCTATTACG--------TATCAATATTGCAATACATAATGTGCTaatg------ttagagacaaaagacagttCACACGTCTTTGGCGATACTGTTTATAAAATCTCGTGCCAGCAGCCGGCGGCCAGCGGATCGTACAAGCTCAGGT--------------ACACAACAAATGATACAACC-AGGGAGGGTTCCGTG-TTCGACCCGCCCCTCAGGCATCCTGAGTCC--GTGGTAGTGC--AGGACCCTT-----------TGAATATCCCGCTCCAATTCTGAAAATCAGACTCTCTGGCCAGGAGAATCTTAACCGCGGTCTTCACACAAGTCTTCAGAGAGCTTAATTAACACCGGCTTTTCCAGGCTCCCCCGACCCCACAACAGCGGAACTGCAGTTTCCTTTAACACCTGAGGTCCCAACCCGACCCGCCACCAGACCTGCCCCCGTGCTGATCCCCGTAAAGGACTCGGCACTCTACTCACAAGCTGGCTGTGTCGGGGGGCAGCGGGCCCGACAGCGCCCTCCAGCTCAGCGCGGGCAGCTTCCTGCGACTGCAGTCCAGCAGAGGAACGCTGCAGGAGCAGGGTGCGGGGCAGGGCACTGCCCGGGCGCCGGGCAACAAAAGAACCGCCTGGGCGAGGAAAAGGAGCCGAGATAGGGGTCCGGATCGACACCCCAATTGCTGCTCCTCCCGGACGCCTACAGGCGCCGGCGCCATCTTCCCCACAACCCGGACTAG-TCAAGAAGAGCTGCCTGCTGGACTAGGCTGCTCAGCTGAGACGTTTGGCGGCTGTGAGAAGGGG----CCGAAGCCCTGACTGTCACGTGTACACTCTAAAAGCAGGGGAAAGCTAGCTGCGGTGCGACAGC------GGGGGCGGCGGCCGGGGACACACGACTGAAGCGCCG-CGGACAAGGATCCTCCGCCCCGCCCCGCGACGCAACGTCCTCACGCACAGGAAGCAGCCAATCGGCGCCATAGGATG-GGTTGCGTCGG-GGCGGGACTCCGGAGGAGGCGCGGCCCTCAGCCTTCCGGTTCATTTAGAAGGCGGGTGTTAAAAATCCATGGCGACCTTGGTGTCT------------CTCTGCAGTTCCGTCAAAGTTCTTACGCTAGGGGGCGCAGTGACTCCTTAAGAGGAAACAG---GCGTGAAGCTTTGGGAGTCTCCAGTCCCCCCTGTGGATGTATATACCGTAGTATTG-GAAAAGTCTTACCTTGTCTAGGCACTAAGAAAGGGAGACCGCAGAAGGGTT-----CCAAGCCGCAGACTC----CAGCGCGCGGGGAAGCTCTCATCCTGGCTTCGGCCGGGTTGGCCTCCACTGCC---CCCTGGCG----CTGT-GCCGCGTGTGCTGTCCTGCAAGAGTCATGCACCTCTGCTCTTCTG--ACAAAATATGCTCTCAAGTCTGCAGAGAACCTGTGAAGTCCTGA--GTCACAGGCTCTGTTTATTCATCCCTGCACCTCCAGCTTCT------GCTTGGAGTTCAATGACTGCTGGACTCCAAACCAGTGTATGTCTCAGAAATCCTCGACTACGTTTGGGAAGGTACTGGCCTCGATGCACACGTTCAGAAAAACAAGTGGTACAAGTAAACAAGGTG----------------------------------------TTTTGAGCCATCAACAAAGT---GATGATTgaatggaattttttcttttttgtcctga--TACAGAGGC--AATGGAAAATTTAAAGTCTAGGTACATGTTATGCTTAGTCAGCCGTAAATTATATCCAACATTGTGAATAGGACTTGGAGAGTAACAGTAATGATTCATT

a score=28034
s chr3           104521232 738 + 160039680 ccaaccccCAGACCTGCTCCTTTACCCTGTCAAAGTTAAGAGAAAACCAAGCTT---TCTGGATCTAGTAATGGT-------TAGGAGACCCTTGGGAACCTCAGAGTTTGGTTATTCTCAGCAATCAGCAGGTGCACTCATGCGTTCCTGGGCTCCCCCAGCTTCATCCCATCCACCAGCCTTTCAGGCTGGAAATGTACCCACAACCCTTTAGCAGACAGAACACTGAGGGAA-CTTGTGTGTGTGATTGCATGAATGTG-----------------AAGCTGAAGGCCAGAGCATGGAGTAAAGCCAAAAGCCTGAGGTTGGTTATTAGCTCCAGGCCAGAGCCTTTCTGTCCCTGTTTAGGCCCCAG-TGTTCTGCCAAATTGACAGACATTCA--CTGTATAATAAAGTCCTCGATGATTATCCTGATGGTGTCCCCAAAGACCTGGGCTCTGGGAGGTT-CATCTGCCAACCCTGCTTCCCCAGGTCCACT-CCCTATGGAAATGAGAATGTCTCTGTGACTCCCCCAACCATTTCACTTCCCCAGCATAATGCCTATCCTCAAGGGACCCCAATCCCGGGTC-----TGTTGTGACAGCAGTGATTTATTAATTGGACTAATAAGAGGTC-TGTGCAGGGAGAGGAAAAGTAGCTGGCAGACTG--AGAAGGAGGCTGTGAAGTCAGGAAGATGGTAG-CACACAG-----AAAAATCAAGATTTCAAGATAGAACCAGTGGCTCAGACTCTCAGTATTTGGAGAAGGGTACAGGGAG
s HiC_scaffold_1 114982449 757 - 233722169 CCACTCCCCAGACCTGCTCCTTTATCTTCTCAAGGTTCGGAAGGAAGCAGCTCTCACTCCAGATGAAGCACTGGTGCTGGTTTAATGTGCTCTTGGGAACCTCAGAGTTTGGTTATTCTCAGCAATCAGCAGGGGCATTCGTGCATGCCTGAGC-CCTCTGGCCTTACCCTCTCCACCAGGCCTCTACA----------------AACTCTTTAGCTGGCTGAAAGCTCAGGGAAACTTGTGTGCGTGCCTgcttgcatatgtgtgtgcatgcccAAGCGAACCAAAGCCCAGTGCATGGAAGGAGGCCAGAGGCCTCAGGCTGGTCATTATGTCCAGGCCAGAGCCTTCCTGTCCCTGAAAGGGACCCTGTTGTTCTGCAAAA-GGACAGACTGGCACTCTGTCTAATGAAGTTCTCAGTGATTATCCTGATGATGTCTCAGGAGACCCAGGCCCAGAGAAGTTCCAGCTGCCAACCCTAGTTCCTT-GTTCAACTGTCCTGTAGAAATGAGGATAACTCTGAAGCCCCC---ACCATGCCACTTCCCCAGCATAATGCCTATCCCCAAGGGACCCTGATCCTGGGGCCCAAGTGCAATGAGAGCAACTGTTTATTAATTGGACTAATGAGAGGTCTtgggcagagagag--aaagaagctgGAAAAGAGGTAGCAGGGGTCAGTGAAGACAAGAACAGTTTAACCATACAGGAAGAAAGGACTAGGATT--AACATAGAAGTAGT-CCTCACTTTCTGAGTATTTAG-GATGGGAGCAGAGAG

a score=16270
s chr3           104522505 1387 + 160039680 GTCCTTTACAGGAACCCTTCTCACAGCATTGGAGTAACAAGT-----CAGCCCCATTCCCTAACTGCCAAGgttccaagctctgtactgttttatatgcattcatcttagatcatctttgcaagattcatatgggatgggaattccattattcattttgctaatgacaaaatcaagaagcaaagagggctgctcaaagtcac------------tgacag-gttagga----aacattggagacctgagtggcacagcctgactctgaggccTAGAC---------ATTTTGTTGTTGGTGGTAGTAGTGGTGGttttgtttttgtttttgttgttgttGttgttctgttttgatgtaaggtctcataatgtagcccaggctggcctcaaactggctaagtaactgatcttcctctctctcccaagtgctgggattgcaggGGTATAACTGCTTGCGCTATCCCTAGGTGTCCAAACTCACAGAAAAGAAGAATCAACACACAAACAAGCATTTGCTGAGCATGCCTCCAGGTAAAAGAACTAACCCTTGTTTTTTAGGCATGGGGTATGGGGAGGGGGTAGTGttcaggacaggttttctccatgtagccttagccgtcctagaactcactctgtagaccaggctgtcctagaactcaggga--tctacatgtctctgcctcccaagtggtgggattaaagggtggtatcactAAGCCTTTATATGGAACAGC---TCcaagcctatgaggcaaagacgtttatcacctgcctcctgtcctgtagctgaagaaacttgcaagcaggtgacatcatttacctaaagtcacacg-ttaatgagcgcctgagcagagactagctatctagggtccag--tgcagttcttgccttagtccatggcctttctttggcaatccacctc---tgtcCTGAACTCCTACAGGCTTCTCCCATAAGGGAATGGTGGGGCTTCCTACTTGTCCGCAGAGAGCTCCAGTGTGAGTCAGAGG-ATCAAGAT--CATCAGAATTTAGCTGATGTAGCTGGAACC-TAACCAGGGAAGAG------GCAAACTGCCAGGGA--------AGCAGCCCATTAC----ACGCA-CAGAAGAGGGTCCTTCAGAGCATTCCAAGTCCAACTTACCACCAGATCCAGGAAGAGGCCGGGGGTA----TTGATAGCATGACATTTCCTTCAACATTTTGAGGCTTGA--TTTGTTTCTGTCAGTGAG---------------------------------------------------------------------------GCCAGTGGGGTATTA------------TGAGTCCTTCCTGTTTGT--TTCTAGAAGCAGTTCCAGCTGACCAGCCACTGGGAACCTGCTGCTTAGGCAGCTGATG-TGGACTGCAGAACAGCACATGGAAAGTAGGGCAG---AGGGTCAACTTCCTCCTGGGACTGAGAACGGCCTTGCAAAGAAGAGACAAGGGTTAAGGACACAGGAGTGTGGCACGTGCGTGC
s HiC_scaffold_1 114983235 1401 - 233722169 GTTCTTTATAGGAAACATGCTAATTTTCTACCAGCAGCAAATTATAACAGCCCCATTTCCTAAAAGCCTGTATTTTAGGCGCTGAACTGTTTTACGTGC-TTCATCTCAGTAAATCT---CAAGATATATGTGAGGTGGCAATCCTCTTGTTCCTTCTgctgatgagaaaactgaaatccAACGA---TTACCCAAAGTCACACTTGTATTAAGTGAAAGAGCTAGGATTCGAACCCAGGCAATCTGACT--CAGGCCCAAACTTTGAGGCCCAGATTTAATCACTACTTCAtgggaaataatagaaaatgaggctcagtgcataa-------acaaatgtagCCCTTTTTGAGCAT----TCT-----TCTAGGTCAGAcagacttttttttgtttg-----tttgtttttttcctttttaccggtaccaggaat-cgaactcacgactgcctgcttccaaggcaggcgcttatgc-cgctgagctaaatccccagcccctagacagacttttttttaaaattgataccgaggatcaaactcacgactgtgt----------------------------gcttgcaaggcaggt------------gcttatgccact---gagctaaatccccag----------ccctgaagtcAGAGAgttctaaacatttttttttttt------------------tttttagttctaagCCTTTTGCAGTAGCAGCACCTCCAATTCTACAAGGCAGATatgtttatt--------------ttacagatgaaacag------AAGAGGTGAGGTAATTTGCCGCAAGGCATGTAACTAGGAAGTGGCAGCACAGTAGTTAGATATCCAGCTCCCTGACTCCAGAGTTGGGctt----------ctttctttattatgttGCCTCACTTGCCCTGAGCTCCTAAAGGCATCTTGCATAGGAGGAAGATAAGACATTCTTTTTAGA-GCAGA-AGCTCCAATTTGA--CAGAGGGATGAGGGTGGCCTTGGAATTTAACCTGAGGAACTGAAGCCCTGATCAAGTGTGTGTCTGGAGCAGGTTGCCAGGACTCAGGGTTAGAAGCCTGTTATTTATATGCAACTACAGGGGTTCCTGCAGAGTAACTCAAGTTCAGCTCTCTGCCAGGTCCAGAAAGGGAGTTGGGGGAGAAGTTAACAGCCTGATATGTTCCTCAACATTTTGAGATTTaaagtctctttctctccctgtgtctctcttttcctctctctccttcactctctcactccttctccttctccctgtctctctccccccCATTTAGGACGCCAGCAGGGTAATCCTCCCTGGCAGCTGTGTCCTTCCTGTTTgtccttct-gaagcagttccagcTGACCAGCCACTGAGAACCTGCTGCTTAAGCAGCTGGTGATGGACTACAAAACAGCACAAGGAGAGCAGGGCAGGCAAGGGTCAGCACCCTGTTGAAACAGTGACCAGC------------AGAGAGGAGCAGAGGACACAGGCACGCAGCTGATGCATGC

a score=17120
s chr3           104525726 798 + 160039680 AGAGTTCCAGAAGCGTGAGAGCAGATGAGAAGCAGGGGAGAGGCGTTTGGGGCTCCTCAGCAGGGATACACAGAGACTCAGCATTGC----------------------ATCACCCAGACTTAGGGAAG------------CTCATTAGCTGGAAAAGAAAG-----ATGTGGGAGCTCCCCTGATCCTCAGATAGCCCTGCAGTT--AGAAAGCAACCATTGTCTCCTCATTTGTGACGACGGAAAGATGGAACAAACCCGTGCAAGTTTACAGTGTGGTGGAAAGTTAAGTTCAgggctaaaggtgttcactggcagtgaagcacctgcctagcctgcagaaggccttaaattcaatactcagttcttgtttaaaaaaaaaCTCACCCTCAAATTCAGCGTCCTCTCCCCTCCAGAATATGCACAACTTTTATGGGTGTATAAAACAGAAGTATATATGTACTAAAAACATATACACATGTAGTTGTAAACTCTAAGTGCACGGTTTACAATTTGTTAACACATATTTAGACCACTCCCCATTTTATACAAGTAGATAATATTCTAAGTGTAATAGGAGTGTGTGCAGTACCGTGTATATATAAAATGTGG-AGATAATACATAAAGCACT-AGAAGGTGGTTTAAAAATAAAACCCCACCTAAATGTGACTTGGCAGGTCCTGACAAATACAGAGGTGTGTCAGTGACTAAACATGGTTGGGCAAGGTTAAATTACAAATGAAATCACTTATAATCATGGTTCTGGAAAGATGTTTAACAGGAGTTACAGTCAGGAAACTTTAGAGTGAAATACATGTAGATTCAGtctctctctctc
s HiC_scaffold_1 114985537 686 - 233722169 aaattttcagaatcATGTCCACAAATGAGAA--ATGGGAGAGGAATTTAGGGCTCCT-AATAGGGATATACAGAGATGAAATATGGCTCTGTAAAGGCAATGCCagtttatcatatatatttattagagTGCTTTTTCTAGCTCATtaggtaggaaaaaaaatgaatgtatggGATCTCATTTTATCCTTGGGTAACTGAGCAGATGAAAAAAGCAAGCATCATCTCTCT-------------------------------------GTTTACAG------------------------ATAAAGGGTTTCAATA-CATTTGAGTA-----------------------TAAGTTCA-----CAGAGCTAGTCAAAAGTAGAATTCT------AAATCAATATTATTTCCCCTCCATTATATCCACAGCTTTTATACACATATGAAATGTAGGTGTGCAT-----------------------AGATATAAACTCTAAGTGCTTTATATGTAATTTATGAACACAT--TTAGATTATGCCTTAtttcatata--tacatg-tatactaAGGGTTAT----------------CTGTGTGTATATAAAATGTGATAGGTGGTAAAGAAGACATTTAAGAGGTGGTTTGAAAACAAA-CCCCACCTAAACATGACCTGGCAGGCTCTG-----------GGCGTGTCGGGGACTAAAGAAAGTTGAGCAACATTGAATTATAAATAAGATCTCTTATAATCATGGTTCTGGAACAAAGTTTAGCAGAGGTCCTTTGCAGGCAGTTTTGGAGTGAGATATGTGTAGGTTCAAAGTCTttctctc

a score=56716
s chr3           104540603 2723 + 160039680 CATGACATCAGAACGTTCTGTAGGATTTGGCTGGAACTCTTGCCTCCTCCCTACCTGAACCTTCACCCCCACCC----CCGTCCACCTCCCACATTTCTGGCCCACTTTCACCCCAAACCTTTTGCAACCGTTTAAATAATTTCCCACACCTGACCAGGAAAGGGGCTCCTGGGCAGGAGCTGAATCTGCTACGGAAACCTGGACTTGGGT-----ACTGAGAGCTGAGGCACTCTGGAGATCCG--TACAGTCAGAGACTGGA-----------------------GGAAATGGGTCATTGCTCATGGCTGGCAGGAGCTACTGCTA-GCCTGAGCTTTTATGCTGGGAAGAAATCCTTGCTCTTTCAACCAATGACCTACATGAACCTTCATTCCCAACAGCAATAAAGTGGGGCAATAAAGTTGGAAAGAAAAGCTGACTCCACAGCTGTGGGGCAAGAGTTCCCTGGCAGGAAAAGAAAGGCTGAAAGACCTGGTGCTTTCCCGGGACGaaaaaaaaaaaaaaaaaaaaacaaaGAGAGGCTGAGAAAGGAAGATTGGGGGCAGGAGGGGGACGCTGAGTCTTGACTAA-AGCCTATAAATGACTGCACACCAAAAATTTTTATCAC-TTTTCTTCTTCTGTCTCCCTATTTTA--TTAAACATCCTGACTGTCCAAGGTGAGGTAAGGGTGAGCTAAAGGGGAAAGCGGTTGCAGAACCAAATCAAGTGTGGAGCTTGGAATCATGGGAA-TAGTGGGGCTCTTGGCAGAACTCTGCTGTTTGCTGGCTGTGCCCTGGAAACACCCACTGCATTGGCTAAATCTTC----CCAGCAAACGCTACTTTACCATGATTTTGTTACATCCT---GAATTGGTGACCTAGTGACCTTTTTGGTCTTGTCCTC---------------TCCTCTCCCTCTACTGCT--------CTTCCTCTTTTCCTTGGC---------GTCCTAGAGTGTCATTTACCGGTGGGCAGCAGAGGGCGATCTGGCCCCGAAGAATGACCGAGTCGAACCC---------CTGGGCTTGCTAATGACTTGCAGTTCCATCAACATAAAG---------TGACAAAGGGACATTGTCACGAAGCCTTTGCCTTTCCA------TTCCAGAAGGCGCTACTGTCTTGGCTGACCCCTTTCCCCTCCC---------TCCCACTTCCCTTGCTGCGTCCCCCTCAGTCCACAGCAGCGGAAAATGAACGGGGTCCACAGTGGAGAAAAAAACAAACCCCAGGG-CCTGCTGAGGGAAAACCGTAGGAAAGTGACC----GGCATTAACAGCTGCAAGAGTT-----TCTCTCTCTCTCTCCAT------------------------------------------------CCCCCACCCCA----TCtcccaaacctcagcatacctaattatcccctgcaggacttgtt------------------------------------------------------------aaaacacagcttcctgggcctcaccctggaattctgttttaacagcctggacgggg---ccaggcgtttgcattCTTGCCTTTTCCAAGGTATTC-------CGAGGGAGCACAAGGTGGGGTTTGGAGCGGCGTTTATGAATTCCAATGCAGAGATAGGAGTAGACTGCAGTTTGGGTCAGGGG------CAACATTCTGGTGAGATGACACCCCCC----CCCCCCCCCAGATCCTTCTGACTCCAAGCTAGAAGACTTCATAGATCAGCCAACT--------CCCTCCCTGGAAAGGAGCTGAGAATGTGTCAACAAAAGCATTGTTTGGAGGGGGGCTGAGTCCAGATAATAGGCTGCTTCTCCACTGACTGCTTCTTTCATCC--GCTGGCTGGAGAATCAGAGTCGGCCTCTCCTTCACCCCTGAGCAGAGATGGCTTCTCCTCCATATTAAAATAAAGAATTATTCCTGAGCCCAG------------------CTGTCCTTGTTTAGCACTCTCCAGATCC-AGGACCTCCAGGGTGGCAGAGTCCTGTGTGGAATGAGCCCTTGTCCTCAAGACACCAAAAGTCCTTTCAGTCACTTAAAGAGAATTCCTTCTGTTTACTGCTGAGAGATAAAAGACAGA-----AAAGTATTATG--------GCCTACATATTAACCCCCATGTGATACTGTTAAGAGGGA------------GTACCTCCCAAAAAGGG--TAAGCCAGGCCAGCACCAATGCCTCCAGCCCAGAACTAGAATGCCAGGCCAGCAAGGAGTCCT-----CAGCTAGACATATT---CTCAAAGTGGTGGTGGTGTGTCTCTCTCTCtgtgtgtgtgtgtgt-----gtgtgtgtgtgtgtgtgtgtgt-gAAGGAGAGAAGGACAAAGAGAGTGAGCCTTTTTtttggttgtttggttggttgtttgtttggttggttggttagctgTTTTTtttttttttggtgctggggatcaaatccaagacctcatgaacctaagcaaaccttctaccacCCGACCAAGGGGGGGGGGGGCTATTGGGAGGCAGTTGGGTCACCAGGGAAGAACCCTTGTAAATGAGGTTTAAGGGTTGATATTTGTCCCTTGCAGACAGTGAGAGGGCACATTAAAATCATTTTCTCATgaggctgaagagatggctcagtagttaagagcactggctgttcttaaccaaaggagcccgattcaattcccagtacccacgtggcagct---cacaactgtctgtaac----tccagttccaggaaatctgacatcctcacacagacatacacacaggcagaataccagtgtacataaaatgaaaataaGTTgccgggcatggtggcgcacgcctttaatcccagcactcaggaggcagaggcaggcagatttc--tgagttcgaggccagcctggtctacagagtgagttccaggacagccagagctatacagagaaaccctgtctcgaaaaacaaaCAAA
s HiC_scaffold_1 114992694 2790 - 233722169 CAGGATATCAGAACATCCTGAAGAATTTGGCTGCTGCCTTGATCTCCTCCC-ACCTGTCCTCTCATCTCCACTCTCTACCATCTACCTCCCA------TCACCCAC-----CCTCAGAACCTTTATGCCAGTGTAAGTAATTTCTCTGACCTGCCAAGGAAGGTATTTCCCCAGCAGGAGTCTTACATGCTGCAGAAA---AGAAAAGGGTGGGTGATAGAGGGGTGAAGGACACTGTAGTGTCAGCTACAGTCAGGGATGGGAAGGGACAAAGGcaaaaagcagaaggaaatggGTCACTGCCCATGGTTGGCAGCAGCAACTGCTGTGCCTGGTCTTTTAATTGGGAAACAAATCTTCGCTCTTTCCACCAGTGACCCACATGAACCATCATTCCCAACAGCAATAAAGTGGGGCAATAAAGTC------CAGGGCTGACTCCACGACTGTGGGGTAAGAGTT-CCTGGCGAGAGAAGA----CTGAAAAACATTGTGCTTgcatgg-------------aaacaaaagaaacaaagagagccCGAGAAAAAAAGATTGGGGGGAAAAAGTG-----CGAGCCTTGACTAATTGCCTGTAAACGTCTCCACACCAGAAATTTCTATcgtgttttctctttctgttgccCTCTCCTGTTTTCAACACCCTT-CTGTTCAAGGTGAGGCAAGGGTGAGCAGTGATAGACAGCGGTTACAGAGCCAAATCAGGCAAGATGCTCAGATTCATGGGAGCTGGTGGAGCTCTTGGCAGAACT---GGGTTTGTTGGATGAGTCTTGGTAACACCCACTGAATTGGCTGTGTCTTCCTTTCCCACAAACAAGAATTTAACAAGAGCTTGCTGCAGCCTGGGGACTTTTCGACTT--TGACTTTTTGACTTTCGACCTCTTGGCCTTCCTGCAGTCCTCTCCCACTCCAGCTCCAGAGagcttcctctttatcttggcaGCACGGCAGTCCCAAGGTGTTACTTATCGGTCAGCAGCAGAGGGCGATCTGGCCCTGAAGAATGACCCGATCGACTCCCGCAGTGTGCCGGGGCTACTAATGGCTTGCAGCTCCATCAACATAAAGCTCAACTCTTCACAAAGGAACATTGTCACTaagcattttccttttcattcttgttcTTGAAAGTTCAGCTACCTCATCTAACCCTTTCCCTCCTCCAGTCTTGATTcctgctctctttcctctctcagcctc--ttggaAGCAGCAGGAAGCCAACAAGGTCCAcagtagag--aaaaacaaatccCAGGTCCCTGCTGAGTG-AAACCACAGGAAAATAAGCAAGTGGCATTAGCAGCTGTAGGAGGTGTAGGCaactgtgtgtgtgcgtgtacacGTAGTCATGTGCACGGGTGCGTGTGTGAGGATGTATGTGTGGCTCACACAGCAGCACTTTTTTGAACTTTAGCATGCATAAAAGTCACCAACTAAGCTTGTTAAAACACAGCTTTCTGTTTAATGTGAGGActttgtgaagaaaacaaaacaaaacaaaacaaaaacacagcttTCTGGACCTCAGCCTGGAATTCTCCAGTA--GGTCTGGAAGGGGATCTCAAGAATTTACATTCTTAACTCTCCCAAGGTATTCATTCCAATAATGCTGGAAAGGACCATGCTTTGGGTAACACCACTGTGTACAAATGCAGTGTACAGATTATGT--AAATCTGGGTCAGGGGTTTGGATAAGATTCTAATAAGATGACCTCCCCTAGAACAGTCAATCAGATCCTTTTAACTCCAAACCAGAAGATTTC--AGAGTGGCTAACTGTTGTTCCTTCCCCTTGGAAAAG---------------------AGCATTGTTCGGA-GGGGGCCGATTTCAGGTAATAGGCTAGTTCTCCACTGATTGTTCCTTTCATCCCAACTGACAGGAGAATCATAAAAGGTCCTGCCTTCA-CCCTGGACTGGAATAGA--CACCTACATAT--AAATATGGCCCCCTCACTGGGCTCCACAATTCATGGTGAGGTCTCTGTCCCTGCTCAGGAC-CTCCAGATCCTACAACCTCCAGAACCATGGGG-CCTG-GTAGAATAAACTGCTATCCTCAAGACTCGAGA--CACCTACAGCCACTCAAGGG-------------TtgtgaaggggaggggaagcaaaaATGACTAAGGTATAATAAGTACAGTGTATATATACTAGTTCCCCAGGGGGAATGCAATGACATATATCACAAacttatactaataaaaaagaaactaagtaaaacaaataaaGGCACTTCGA---TGGATTTAGAGGGCCAGTCT--------GTTCTTTACACACCAAAAGATAACAGACTGAGAAAAGTGTTGCTGTGAC-------CTGAATATTGATATATTCCCCATTCATCTGTTTGAACTTATTTCGCAGTGTAATAGGGTTAAGAGA-TAGGGCTTTTATTTCcttgt---atttattgtttatttg-----------------------------caCTGTTGGAGATCAAACCTAGGACTTCATTTG--TAGGCAAGCACTGTATCACT-------------------------------------GTC-------------------GAATacaactttctatttttttttttttcctttgagacag-----------------------atctcactaaattggctAG--GCCTCATT--Ttggga--------ttctcttgcc--------tcagactc---ccacaGTGCTGGTACTGCAGACAGGCACAACTACACCTGACAAGATTAGGTTTGAAAAACCCCATaggtaccactgagccacagtcCTGGCCCAGAAGCCTAGGCTTTTAGAAAGTAGTTAGG--GGCTGgtgtggtagcacaggcctgtaatcccagcactcaagaggctgaagcaggaggattgctgtgagttcaaggccagcctggatcacaaagtaagtt-caatcctacctgaattgcatagccaaa--ctgtctcaaaaaataaaaaaa

a score=7416
s chr3           104558812 252 + 160039680 GGCTGAG---ACTTTAACTGAAGGAAGGACCGGGAAGGGTGTCTCCACTAGAGACCATGCCCCAGCTAGAGACTGCCTTGCTTCACCATTTACGGTTTGCGCAAAGAGCTCCTGGCTGATTGTAGGGAACCATCTTCCAAATATTCACTCATGTTCAACTCCTGTCTGTAGAACATGCTTAACGTAGAGAAAGCTACCTATTCCCACCTGACTGAACCAGTTTCCTAGGTAATAGCCATCAGGCTTG-GGCAGAGA
s HiC_scaffold_1 115025783 245 - 233722169 GGCTGAGCTCACTCTGACtcaggga--gaaggggaagggtGTCCTTGGTGGAGACGCTGCT-----TGTGGATGGCCTTGTTGCTTCATTG--GATTTGTGCAAGGAGATCTTGACCAATTTGAGTGAA--AGCCGTCAAATATTCACTGCTTTTCAACTCTTGTCCCTGGAATATGCTTACATTGGAGAAATCTCTGTCCATCTATCTGACTAAACTAGTTTCCCAGCAGACCACCCTCGAGCACGAGGCAAAGA

a score=9478
s chr3           104567465 554 + 160039680 tttatattttgagatgctgtggtatctagactggccttgaactcctgggttcag-tgatccttctgtctcagc---ctctgaggtagctgggactacct-cacgcactgttacgTGAGGCTTCA------------GTAGCAGTGTCTGTTTGGTTCTCTGTGTGTTTTATACTTTCTTCCTTCtttcttcttttgacagagtctcattatgtagcccaggctggattcaaac-ttgtgtatccacttccctagtgctgagattactagtgtggccccatgatgcgcctgcctggctATGCCTCAGGGTATCTGAGCAGTTCCACCCCCGAAGGACAGTCACCATCCATTCAGGTGTCTGCCCCTAGGTCCCCTTGCAGGAGGGAAGTCTTGCCTTCAGCCCTCAGCTCTCAGCCTTTACCCTGCTGCCTGGGGCAAGCTCCAGGAAAAGCTTGCCTAATTCCAAACTAGAGAATCAGAGCTCTTCTCTGGAATTCAAGCACGACTTAG--AAGTCAGAGAAGTACACA-------GTGCACCAAATATTCTTTT---TTTCTTTTTTACAGTTTATAATGTGC
s HiC_scaffold_1 115032924 446 - 233722169 tTTGTTTTCTAAGACTCTGTGCTGCTCAGCCTATccctgaactcctgggctcaggtgatcctcttgcctcaacgtCCTCCAGAGTAACTGGGACtataggcacacaccaccagCTCTGGCGTTACTATTATTATTAGCAGCAGCATCCGGTATGGTGTCTGTGT---------------------------------------TTAAATGTGCGACTCAGCCTT--TTCGAAGGTTGTGTACTCGC--------------------------------------------CCAGGCT------------------------------CGGAAGAACAGT----------------ATCTACTACAGGCTTCCCTTCCAGCAGGGAAGTCCT-----TGGCTCTCAGCCCTCACCCCTCCTCCTACTGCCTGGGGCAAACTCTGTGAAAAGCTCGCCTAATTCCCAACTAGAAAAACAGA--TCTTGTCTGGAATTCAAtcacaatttagaaaagtcaGAGAGACTGACAGCCTGGTGTTCAAAGAGCCCTCATTTGGCTTTCtgctttacattttataaagcaC

a score=35443
s chr3           104595415 2152 + 160039680 CAGATTTCATAGGTAACCCCCAACAAAAACAAATTTCTAAATCGGACTAA-------TATAGAGCCTTCCAAATCTATTCCTTTAAAGGCAACAAAA--CTTTCCTGTGTATTTATTGAACTGTCAGA--CAGTTTAACTTGCTAGTCAAACACACAAGCTTTGGTCTGATTAA-CTCTCAGTTCTGTTTCTATTTCTTGCCAAGAGTTCAGCTTTGGGCAGATTTATTAGCAC--AGTGAACAAAGAGAAACAGCTAACTGTAgtggtcccccctaccagggaggctgaggcaggaggatcacttgagctcaggactttgaggtgagtttaggtttgtctctaaaattaaattgaatttaaaaattaaatggagcccagattcggtagtgctggtctttaatcccaacactctgggggcagaggcaggaggatctctgtgggttcaaggccagcctggtctacagagggagttccaggacaggcagagctgtttagagaaagactctgtctccaaatgaaaagaaaaCTAGTACATGCTGAGCATGTAGTATGTTAGTATGTAGTGTGTTGTAGTATGTTAGCATAAGCatgcagtatgtcactttgtcatacccagttcaaagatgagaagggagaggcagagaaagagtgaggaatttgcttaaAAGGAAAATAGAAAAAAGGTGGTGCACAAAGTCC----CATCCCAGACCAGGATCCCAAACA----TATATCCTTCTGGTCCTTGAACACTGAGGGAACCCTCACTGTACCGGGGGTCTCTAGAAGTCAGACAAGGAGTCATCCTGGCCCCCAAGAAGTCTTGTGTGGCATGACTTCACCACAGTGAGGTTTTTATTCTCAGCCACATATGTTTAGAAATTCAGTCTGTCTGCCTTActaggtatggcagcgtacacctgtaatcccagc-acttgggaaattgaggcaggaggatt--gctatacatttaagaccagcctggaattacagaacaggctctgtttaaaaacaaaacaaaaCAAAAAAGCCAGAACAAAATCCAATCTGCTAACACATAGGCAGTGAATTTGTTTCCTAAAGCTGATTCAAAATCCCAGAGGCTGGTGTTTAAAATCACAACAGCAGTTTATTCTTAAAATTATTCTTGGATACAGAAAGAAGCACAAAGGCTGGGGACTGATACACTCATGTCACACGTTCAGCACTCAGGAAGCCTAGTGGCCAAAGTCA-TTGCTTGCAGAGC-CGGCATCAGAAGCCAGGGAGCCCCTTTCCTTT-GTCTCTAGGAAGTCTGTTTTAAGT--TATGGATACTG-----------------------------------------------------------------------------------CAAATCATGACAGAGTCAGGCTCATTGGTGCCAA---GGCATCAACTGACCTGCCTTAAGAACTGAGCAGGTGAGGGTAATCTCTTTCTTGCCAGCCCTTGA------ACCCTCAGTTTTCACTCTGAGACCCTTTCTGTTCCAAAGCCTCCAGGGTCCA---GCCCTGGTCCT---GAATACTGTGTGTGAATTGAGGTCAATTATTACCCCATACCACACAGCACCTTGCAGCCCACGGGGCCGTGCTTTTCCTTTACTAAGTGAAACGTTGGATAC---TATACTGACTCTCAGCTTTCTGATCTTGAAAGGGCAAGT-TAGTTCCAAGTTCTT-------------------GAGGCT-TCAAATCCTGACTGAAGCC-TAAGAGCCAGGGCTGGCTGGTGGACATTAGCTACTCTTTCATTTCTGAAGGTTTTGCCGGGTGGGCTCTCAAGCTTCAGAAACAGA--CTGTCGCCGTCAGATTTCTGCCTGTCTCCTGAAAACCAAAGGATAACAAATACTGTTTCTGTAGCTACCGAAGAGACAGACCGCTTGGAGGAAGATCTACATGGCTCTGCAGACTCCCTGGCTGTGCCAACTCTGGGGGAGTCGCTGCACACAGCAAGAGTCGGCTCTAGTTCTTGGCTCTTGGCCACAG-TTCCCACAGCTACAGCAACATTGGCAGCTCCTGCTTTCGTGCAGAGCTTCTAGCATG-CTGGGAGTCTCCTGCTGACA---ACCTCTGAAAGACAAGGCTCCAAGTCCTACTAGCTAAGGCAGCCAGAACTTAAAGGCGAATGGCTGCGGCCA-GATCCCTGGAATCAGGTCATGTCAGAATCT--ACTGCAAGAAAGGATGAACC-CCGCCTGTGTATGTTATATAACACTTTGCACAGAGGGGATA
s HiC_scaffold_1 115061638 1855 - 233722169 CAGATGTCTTAGGTAACT---------ATAAAAGTTCCAAACAGGCTTAGGAATACTTGTATAGTCTTCCAAATATATTCCtttaaagacaacaatatacTTTTTTGCGTGTTTATTAAGCTACCAGAGACAGTTTAACCCACTAGTCAAATCTATAAGCTTTGGCCTGATTAAACTCCCGCTTCTG-------------------GTTTGACTTTGGGCAGATTTACTAGCACTTACTGAACACAG-----TAGCTGGC--------------------------------------------------------------------------------------ATTTCATGAGAGCTATAAGTTAA----------------------------------------------------------GGAGGAACT----------------------------------------AGGAC------------TTAGTGAGC-------TCTCCA-----------------TATATGTTAGGCACA------------ACATGCTGTCCTGTTTTCCTCTAACGGCactatgaaataaa-catttttctgt-cCTAATTCACATATGAGAAGATTGATGTGCATAAAGATTGGGCAATTTGCTTatgataaaaatggaagaaagtttGTACTTAAAGTCTGACTTATTCTAGACTAGGATCCCAAATACAATTATATCCTGCCAGTCCCTGAATATAGAAAGAACCCTCAGTGAGCCTTATAATTTTAGCAGTCTGACAAGGAGGCACACTGACCACCAACCAGTCTAG----------------------GAGTTTCTGG-----GGCCACA--------GAA------------TGTCCTCCCTGACATGG----------------TCTTGGTTATTCAACAAGTTGAGGTTTGGATCCTTAGTTATACAT---------GCTTAGAA-----------------------------------------------------GTCCAATCTGCTAACATGTAGACAGAG---------------------TCAAGCTCCCAGAGGCtgatatggaaaattataatgttagtttattcataaaattgtgactagaaatagaaagaaatataagGACCAAGGACCAAAACATCTAGGTCTTGTGACTAGCATCTGGGAAGTCAGATGTTCACAGCAGGTTGCTTGGAGAACACTGAGTAAGAAACAAGGGGGTCTGTTTTTTTAAGTACAAAAGTAGTTTGTTTTCAATGGTAGGAATCCtggggggttttgttttgattttatttttgcattgctGGGAATCAAACAGCGCTTTATGAAAGGAAGTCTGTTATTTGAGTATTTACAGGTTATGATAGAATCAGA-----GGGAGCCAACTTGGAAGCAG--GACTCACCTTCAGAGATGAGCAGGCTAGTGCACCCTCTCACCTACAAACCCTTGAGTCAACACTATTGGCACTTACTCTAAGACCCCTTCTCTTCCTAAGCTTTCAGGGCTCATTAGCCCTGCTTCTTAgggattcttctttttttttcaagttga----------------AGCATAATCTTGCTGGTCAACAGAGCAAGATT-----------AGTAAAACTTTGAATAAGTGTGCAATGTTTTCAAGCTTT--AAATCTGAAAGGGCAACTGTAGTTCCAAATTCTTCATGGGGAGTCTTCTCATTGAGGCCCTCAAACACCGACAGCAGCAATAAGAGAAGGCCCCCTTTGGTGGA----AGCTGTG-------TTCTCAAGATTTT-CCTGACTCGCTCTCAGGCTTCACAAATAGAGACTGTCTCCACCAGATTCTAGCCTGTCTACTGAAAAGTAAAGGATAACAAACACTGTTTCTGTAGCTACCAAAGAGACAGACTGCTTGCAGAAAGATTTACATGGCTCTGCAGACTCCCTGGTTGTGCCAGCTCTCAGGGAGTCAGTGCACACAGCGTGAAACAATTTTGTTTCTTGGCACTTGGCCGTAGATTCAGGAAGCTACAGCAACAGCAACGGTTCCTTCTCCCATAGAGAGCTTCCAGAATACCTAGGAGTCTCCTGTTGATAATGACTGGTGAAAGAAATGATCAGAAATACTACCAGCTAGAGCACCCAAGATTTAAAGGATGAAGGTGGCCCCTATAACCCTTGTACCCAGGTAATTATAGAACTTAAAATCAAGGAAATGATGCTTCATTGCCTTCATATGCTACATGACACCTTGCACAGGATAGACA

a score=23317
s chr3           104598876 913 + 160039680 gggcctgtgagctcTGGGGCAGGTTTTTTCCCCTACACTTCTGGGCTCCCACACAGGCAAATACAGTGAGGATCCAGGCCT-TGCTGTGGTTGTTTTGTTTTGCTCTTTTTTTGAGGCATGGCCTCACTATACAGCCCGGGGAGGGGGGGGGGGCTCCAGCCCA----GTCCTGCTT-CAGAGTTGCTGAGCTTATAATAGCCCTTTGACACCACTTCCCAGGC---AAGACCCTGCCTTCTGAGACTCATTCTTCC----------------------AAGACTCCTAGGTAGATTCTGAGCTCCAGGC-------CACAGAACACTGGAAATATTTGGTGATCCACGACCTCTTCTGGGAGAGATCTCTTGATTTTGCTGGGAGAA----GCATT--------CAGACTGT----CTGC-CCTGCTCATTGAAGACCAAGCAGGGTTCTAGACTG-CCAAGTTCATTTATTCAACATAGGAAAATTTATTACCATTTCCTGCCTCAGTCCAACATTCACACCTGAAACGCGTGGCGTTCCTAGCAGTGCTTAAGGGTT-AACTAAATGGGAAGGCTTGGCCCCTCGGTGATCC----TTCT------GGGTCTGGGTGTTTTTGAACATTCCCTAC-GCTCTACTCCC-TTTCGTCCTAATGGGCCCTACCCATTGAGGTGGATTCCAGACCT--CTCCTATATCTTTGCCTTGGCTCAGGCCTCTGACCCCTCCACAGCATCGACTCAAAGCAGAGAGATGGCCAAAATAGGCAGTCAGAGAAGAGCACAGGCGTTCATTCCTATTGCGTCTGCTCAACCTCTCAGCCGCCC---TGTCAGGGAGCCTCTCAGAATCACAGGCT-GGGCCAG--AGAGTCTTGCCCTCCTCATTCACAGTGTGAGAACAGAGTGACCTA-AGAGCAAGGTCCTT--CAGAGGCTGTGTGCTGACTGCTGAAAAGCCAGAGAGATACTGCTG-CGGATGTGG
s HiC_scaffold_1 115063517 934 - 233722169 GGACCTGGGAG------AGCAGAATTTTTCCA--GCTTTATTGGGCTGCCACA------AACAAAATGTGAAGTAAAgcccatgcctttttttttttttttttttgtcttttt---------cctttttattggtaccaggga------------tcgaactcacgacttcctgcttgcaaggcag--gtgtttatg-----ccgctgggctaaatccccagcccctaagcccATGCCTTTTAAGGCCCAGTCTTTCCAAGTCATTTCTGCAAGATGGAAAGAATCTCAGGTGGATACAGAGCTCTCGACGTATGCATGAAGAAC-CTGGATACAATCAAGTAGTCTTAGTCTCTCCCTGGAG---TCTCTAGATTTTGCTGAGAGAAAGTAGAGTTGATCGGGGCAAACTATAATACTGAGTCTCTTTGATGAAATGCAGCCAGGGTTCTAGATTGGTTAAGTCCTCTTTTTCAATATATTGTGCTTTATTGGCATATCCCACCTCTGTCCAACATTTATATATTAAA---GTGAAGCTCTCACAAGTGCTCAAGTATTTAACTGAGTAAGAAGGCTTGACCCCTCTATGACTCCAAATTCTTGCAAGAGGTTTG--TTTTTGTGAATATTCCCCACCGTGCAACTCTCATCTTGTCTTAATCAGCCCTACCCATTCAAGTATGTTCCAGATTTTTCTCCTATATCTTTGGTTTGGCTCAATTTTCTGACCCTTCCACTGCAGAGTTTAAAAGAAGGGAGATGGCCAAAATAGGCAGTCAGGGAAGAGCACAGG----CATTCCTATTGCATCTGCTCAGTGTCTCAGCCATCCTCATGTCACAGAACCTCTAAAGGTTAAGGGCTGGGGCCAGGAAGGATCTCCTCTTCCCCATGCACTGTGTGAAAACAGGGTAAGATACAGAACAAGATCTCTCCCAGAAGCTGTTTGCTGAGTGCTGAAAGGC-----AAATACTTTTGTTGAATGTGG

a score=24233
s chr3           104600446 630 + 160039680 tttgtttttgttttt-ccagtgctgaggatcctacccaggacctcacaatt------------tttccaccgctgagctacacccc--atccTTCAGAAGGCTATCATCTAACAAGGACATAGGTACCCACACAAATCAGTGCACTCCAGAGGGAGGACAGAAGA---GCCCATCA--GTAAACGTCGCTCTACCTGGCAGAGGTAGAGGAATGCACTTCC--CTTACCAGCCCACCAGGAAGATGCCTGGAG-CCTTCTGGGGTAGCCTGATTCTCTTTGTGCCCAAGAAGCCAGTGTCAAGATTAATACAAGCAAGTGGAGCACT---------ATAAAGTAAATTCTTCAAAAGTCCCTGTGTGTACCTAACAGGAGCTCAGTGTGCAAGCTCTTTCTTCTCAC---TTAGTAAACTGGGTTGACTGCCAATCATTTCCTTTTAATAGCCGGAGAAACC-GAAGTTACATTGCTCTTCCCTGTTCCTCGGGGCAACTAATACAAGAACAAACAGGGTCCAGTACCAGGAATAAAGTTGACTCATACTCACAGGCTCTCTCTCCTTTTAGAACACATTGACTGAAGACTTGGAATGGGGATGACATTCATTCTCACAGGGAAATGAATGAAGTGGCCAAAAGCAAGAGGTT-AGCAGAGAGCAGG
s HiC_scaffold_1 115064582 627 - 233722169 tttgtttttttttttatcagtaccagggattgaactcacgaccgcatacttgcaaggcaggcgcttatgtcgctgagctaaatccccagctcttcaaATCACTGTAATATAAAGagg-----------------------------------tgaggacagaagaaagGCAGGTCACTGTTAGAATCACCACATGTGATAAAGTTAAAGGAGAGCTTTTTCATTTTACTAGGCCACTAGGCAGATGCTTATTGACCTTCTAGGGCAGACACATTCTGTTT-TGCCTAAT---CCAACACCAAGATTAATAAACACAATTGTAACACATTAAATGCAATAAAACAAATACTTAGTAATGCCTTGTgcaaatataataggaaatcagtgtgtaatacctttctttttttatattaggGAAATAGGTTGACTGCCAATCACTTCtttttaatagcaaaaaaaaCCAGAAGTTGCATTTCTCTTCCCTGTTCCTCAGGGCAACTAATACAAGAACAAACAGGGTTCAGTACCAAGAATAAAGTTGACTCATACGCTTaggctttctctctttttagaacACATTGATTGAAGACTTGGAAT-AGGATGGCATTAGTTCTTACAGGGAAATGGATGAACTGGCCAAAAGAGAGAGATTAAGGAGGGAACAAG

a score=14598
s chr3           104601770 338 + 160039680 AATGTTGTTTGATTTGATGTTATAGGAGAACTGGACTTCAAGGGTAAACAGCTGCAAGGTCTGGCAATCCATAGGTCTGGCCAAGAATTTCCACCAGGCAA-ACAACATTTGGCAACGGCAGGGGCATTCCATTGAAGT--AGAGGAGAGATGGGTTATGCAACAGTTCTGCAAATAAAATGGATTTTTCTGGCATGGCTCAGTTCTCTGAAAAGCAATGTAAGATGTCACCTT----TACAGATATCACGTACTATGCATCTCTTCCAGGTTTAAGTAGGAAGAGGTGCAGTTGAT----TTTCTGA----TACATGGCATTATGCTACACATTGTGCACATAGACtttttt
s HiC_scaffold_1 115066721 337 - 233722169 AAAATTGTTTGATTTGATACTATAGGAGAATTGGGCTTCAGGGGTCAACAGTTATGAATTCTGGCAATACACAGGCCTGGCCAAGAATTTCCATGAGGCAAGGCAACATTTGGCAATTACAAGGGCATTccagtgaaatgaagaggactgTCAGATTGTGCAACAGTTCTGCAAATAAAGTAGATTTTT-TGAAGTAGCcaggttctttgaaa---aatatgaGTCTTCACCTCTTTATAAAGATAT-----------AATCTCTTCCAAATTTAAATAGGGAGAGGTGATATTCATAAAGTTTCTGAATATTATAT-GCTTTAGAATAGGCATTGTACATgcagaatatttt

a score=19036
s chr3           104616171 485 + 160039680 ATCAGGGCACTGCAGGCAAGTCTGTCTTAAAGTAAATCTTCTTTCATGACTCAAACTTTAGCTGAGCCAGTTATTCTTATAGCCCCATCAGGCATATCAACCAACCATGAAAGAGGCTGATGTAACAGATATCAATTTACAGCCTGCTTCAAAGCACGCAGGATGAGAAC-AGAGAGCCCCGAATGACTAGCTCGCAGAAAGAGGGTGGGGCACGGTGGCAGGAG-GGAGGCATCATCAAGGAGAGCCAGGCTCTAAAAGCAGCCGCATGTGACATTTCCGTCAGCAGCCTTCCCTTGCTCATTGTGGATGAGACACACATCAGATGTTCTAGTTTATGATTTCATTTTCAGAGTACATAGCCTGTGAGACCCACGCTCATGTATCTCTTC-----CACTGGC--GCCA--------GCTCATTAA-TGGGATCTAAGGTCCATCTAAAAGTGACGATAG-----AGACCCCTTTCTTCTGCCCTCAAGG---TTAGGAAACCCGTGGATT
s HiC_scaffold_1 115078075 495 - 233722169 ATCAGAACAGAGCACACAATTCT----TACAGTAGACTTTCTTTCATGACTCAAA---TACCTGAGCCAATTATTCTTATAGCCC-ATCAGCCACAACAACCCACCA-------GACTGATGTAATAGATGTCAATTTATGGTGTGTTTTGTAGTGTACAGGATGAGAACTAAGGAGCCCTAAATGGCTTTCATGCAGGAAAACAGTGGATAATATTTGTAGAGGAGGAAGCTTCATTGATGAAAGCTAAGTGTTAAAAGCA-CCATGTGTGACATTTTTATCAGCAGACCTCCCTCTTTCATTGTGTATGAGACACACATCAGATGTTCTGGTTTATGATTTCAGTTTCAGAGTACATGCCCTTTGTGATCTTAACTCATGTATTTCTTCAGAAGCAGTGGCATGCTACAGTTAGTGCACACTAACTGTGCTCTAATATTCTTATCTGAGGGATAAGAATATTCAGATCCCTTTCTCTTATTCACAAGGAACTCTGGAAACTTGTGgatt

a score=7768
s chr3           104622889 334 + 160039680 TCAGGCCTTCTACAAATAATTACTTCGTATTTTCTTTACAGCGTGTGTGTTATAAGCAAATATCTGCCTGTTATGTGTGGAGATCAAGCCTGGGAGCTGGTATGAATCCACAAAGCTGTTATCTCCTTGGTGTTGAAATAGTAACGA-GAAACACTGGAATTCTAATTATTCTGGATGGGGAGGTGAAGATTACATTTTAGGAATTATTGCTGT-----TGAACTGTTTGTCAGGGGCGGGGAGAGACGACCAGATAAATGTGCTTTTACTCTGTGCAGTTCTATGTAAACTGTATCTAACA--GTGCCTGGTACAGGGGACACTGCTAAGTGTCACCTGCT
s HiC_scaffold_1 115080786 310 - 233722169 TTAGGCCAAGTACAAA--GTTACTTTAGGTTTTGCTTACAGTCTATGTCTTAAGATAAAGCAGTTACTGACTGTGTATTCAGATCAGCTTTATAGACTTGCACAGAATCA-------------------------AAATAACAAGGATAAAACACTGGAATTCCAGTTATTCTTGTTGGGGAGGTGAAGAATAATTTGTGGAATTTATTGCAGCATAGATTAAGAGTTTGCCA-GAACAATAAAAGACAACTAGATAAAAGTGGTTTTTCACTGGGCAACTCTACATAAAATAT---TGACAATGTGCCTGGTACA-GACATGCTATCAAATGTTGACTACT

a score=18128
s chr3           104628692 610 + 160039680 TAAGCAGGACTATATTTAAATCTTCCCTCTATAGCATTT-TATTTAAAAAATTACT---TATGATTAAGCAAAAGACTA-CTTGGTGATACACCTATG-ATTCTTGGGG---------CATTGTTCTAGGTTCTCTGTAGAAGGCCTTTATTTAGTATTACAGCTGCAGGGACTAGGAGTTCCCCGAGTAATTTCTGATATCCATA--CTTCATCCCATTAA---CTGGCAGTGGTCTTGGTAGCTATCACAGCCTGAATTATGAGCTATTGTGTTATAGTTAAAACCAATTT-GGCTGTTT----CATGGTGT-GATCTTGTCTGAGCTGATCAAATGACTAGTCAAACAG--AAAGGTTACATATGATAGAGTTAGAAG--TTCCACCTTGACTAATCCTTTTATTGAAAATA-AAATATAGCCCCATTATCTAACCTGTCTGAACCTGATGCAGACTGGGAT---TGTCATGCCTAGTGTTCTACCTCATCACACCGATGCATTGTTTGTCGCGATGCATTGCTTGTCTGCAATTTATGGTTTTGTACCTCTCATTGGCCTCTGGCATAGTATGTAATTTCTCCAGATTCTAGTACCTGATGTGGCTAGTGTA-ATAAGGCAAAAATAACGAGGTATGTGTG
s HiC_scaffold_1 115083866 620 - 233722169 TAAGTAAACCTAGGCTTAAAACTTAGCTTTATAATACTGATAAACTAAAAATTACTCGATGTGACTAAGcagaaaaatatcttagtgaCACTCTTGTGTATTTGCAAGGAAGGAACAGTACTGCCCCAGGTCCTTTGTAG---GCCTTTTTTTAGGATGATGGTTGCAGAGACTAGGAGTTCCCCTGGGAACTCTTGGAATCTATGACTCTCATTCCCCTGGATTCTGTAAGTGGTCTTAGTAGTCACCAAAGCCTAAATTATGTACTTCTGTGTTAAGGTTAAAGCATGTTTGGGCTGTTTCATGCATGATATGGGTCTTGTCTGGACTGATCAAGTAAGTGATGAATGAGACAAGGGTTATACCTGCTGTTGCTAAAAAGCTCCCAGATTGACTAATCTTTTAATTGGAAATAGAAATGAAACTCCTTTATCCAGCCTGTCTGGGCCTGATAGGGCATAAGATGAAGGTCATTCCAAGTCTTCTA--TGGGCACAC-----------------TGATGTGCTGCCCATCTATAATTTAAGGCTTTGTG-CTCTCATTGGCTCCTTACATGGCATGCAATTTAT-GGTATTGTAACTCCTGCTGTGGCTAGTGTACATGAGAC-AAAGTAGCAAGGTGCATCTG

a score=50749
s chr3           104637859 3940 + 160039680 [encoded data, 4719 characters]
s HiC_scaffold_1 115090235 4387 - 233722169 [encoded data, 4719 characters]

a score=6322
s chr3           104643069 624 + 160039680 gccTTTGACTT-CTGTGATTGT-ATCATCTTCC------TTCTACACCGCTCTAACAGTTTCTG-----Gtcatctccctaatcaaaaccactcaagaggt-----gggggccggtagatc---------tgtgagtttgaggcc--agcatgttcttcataccgagttcaaggacaaccaggcctacataatTACAATCTTTTAAATTCTGTGTGTT---CTTTAATTTGTCTTAACCACGTGGCATTTTCTTCCCTCTGCTTTAATTTTTTTTTCTTTTGGTGGAGTGGTGACAGGTCATAGATCTTACAGT------AGATAACCTACTGTAAGGGATCTACTGTAAGAGTGAGCCCTGG---TATCATACAAAAAGGAGTTTCAAAGCTCAACACT------------------------------------------CACAGTCACAGAATGAGCTAGC--TCACTTCACCAA--------GTAATGAAGGCTCGGCCTTTGAAGGATATCATTGACCATAAATAGTG-AACAGGACCCAGTCCTGTTTATTGTCACACTACTACCCTGTTGCTAATTACAGCCCATAATATTGTTCAATTTGATTTGACAGAATTAGCCTTTGTAGAGAAAAGAACTTTAAAATGTTCTGGTATTGTAAGTTGCATAACTGATCATTGGTTGAAAAGCAAATCTTTTCCATGCTTCGGTTTT
s HiC_scaffold_1 115096791 628 - 233722169 GCCTTTTACTTTCTGTCATTGTCATTATGCTCTGCTCTGTCCTATATTGTGCTCCCAGTTCCTGATCATGTCATTTCTCTAATCAGAA--ACTCCTGTGGCTTCCCAGTGCCTACCAAATTATTTGTCTGTGTAGAATTAAGTCTTAAGTATGTTGTGC--------TTTAAG-------------------TTACCAT--TTTAGGTCATGTATGTTGAACTTTAATTTGCCCTAACAAATTGACATTTTCTTTCAT--GCATTCTTCCCTGTATTTTTTGAAGG-GTGG-----------AGATTTTACAGTGCAGGGAGAAAGAGTACTA-ACATGATACATT-------TGATCCCTAGCTCTACCCTTTAGAGTAGGGATTAAAACAGCAATAACAACGTTATGGAAATGATGGTTAGTTTTCTGGGGCTATAGTACCATAATGATAGGATGAGTTCACATCCACCACAACAGTGACATTGGTTACAAAGGCTGAACCATTGAAGGATGCCACT--------ATAGTGCAAAGGGATCCAGTT------------------------TATTGCTAATCACAATTCTCACAGTGGTTGAATTTGGTCTGA-----TTACAATTTATGTGAAGAAGTTGCTCAAAACGCACTGGTATGGTAAATTGCATATTTGGTCATTGGTTGAAAAATGTATCTTACTCGTGATTGTGTTCT

a score=17776
s chr3           104647293 848 + 160039680 TTTTACCCTCCTGTTACTTTAAGGCAGTAACGTTTAAACTGCGGGGCTGCTGCACACTATA---AGATTAAAATCTTAAAGACTTTTGTTCTATCATTCAGCCTCGGGACTT-TAACATGTAAGGTTTATA-GTGTTCCCTTTTA--------------------------------CTGAACTACAAGCAAAGGTTCTAGTCCAATAATTTTCTTTTGGGATAAGGCCTTCTGTGTA------AGAAGAAATGCTGGTATAAATGGAGAC-----TTTTAATCAGAATTTTA-TGT-----------------TAATTGTAACAATTATTTGTCAGGTGATGGTAGAACTGTATTGAATCTGTTTATGGAATTTTTAAATGTTTGCTGTTCTGCCTCCTCCCACCCCTACCCCCCAAAAAACCTATTTTGACATTGATTTACTTGTGAATCTTCCTAAAGCTACTTA--AAAGTTGAAAATCTAGATTCTGTAGAAAAGCTTT---TATTAACTTGATGAGGCAAGTCTTCGTGACTGAAAATTAGAGCTGCCTTTTAATTGGGACAAACCATAGCTGGCAGCTAAGCACAAAGTTTAATCACGTCCAGCACGTATTGCTGTTCTAGTCAGGGCTTGATGTGTTAGACAGCGCTGCTGCCTGCGTGTAGGTGTT-TTTCGTGTATGTAAATACTCCTGAGATCTTTTTAGTAGTTCCTTGAAAAACGT---AAAGCAGTGGCTTTATGCTCAGATAAAGGAGAG---AGAGGATGGGTGCCTGGAGCA--CTTGAACCTCGCAGATTTAAA------------TCTACCAGCACACCT---ATGTTAAGTAGCTTTT--TTTTATTCAAT-CAGGTACAATTTTTAAGAAACCTTGGCTTGTAAAGATGTTTTT--------ATCTGGCCTGAATGAAATTTCCTACAACAGA
s HiC_scaffold_1 115103200 887 - 233722169 ttttaatCTCGcagcattttaaaacaatagC---TAATCTGATAGACtactgtatacaatataaggatTAAAAGTTTGAA--------------CTTTTAGC----GAACTTACAGCATACAAAGAATGCATATGctccctctttttctctgagGGAGGATAAAAAGAAACATTGCTCTGAATACTGGGCAAATAGCCTGCTCTAATAATTTACTTTTTGAATGACTCCTTCTGTTTGTAGCTGAGATTAAAAgc-agtttaaaagaaaataatatgcttaATAATAATGTTACTGTATCTATATCAGAATCTATAACTAGAACAGCCAGTTGGTAGATGGTGGCAGAactgtactgatttttttt------ttttgaaatgtt----------ctttttttcaaaatt--ttttcaaaattcttatt---ACTTAGATTT---TTTGAATA--CTTAA---TACTTACTGAAGTTATAAATCTAATTACAGCACATCAGAATGAGGCATAAACTTGATGAGGCAAGCCTTAGTGACTAAAAATTAGAACTGC--TTTAATTGGGACAAATCATAGCTGGCAGCTAAGCTCAAAGTTTAATCACATCCAGCACGTATTATTGTTCCAGTCAGGACTTGATGTTTTAAACAGCTCTATTGCCAGTGTGGGGGTATTATTTTGTATATgtggat----------tattttta----ttctttgaaaaattttcaagttctctttttttatacTTGGATAAAGGAAAACTCAGAAAATTAATGCTTAGAATAGTCCTGTATAACATAATCTTAAACTCCAGGATGTTTCCATTGGCAAAATTGAGATGTTAAATcactttttattatattcaatgCAATAGAAAAGTTTAGGAAACCTtaacttttagattttttttttcccctacatGAACCATAGATGAAATGCCCTAGATCAAA

a score=27018
s chr3           104649185 1048 + 160039680 TTAGTGCAGAAAAGGGATTTGTGGAGGTTGTTTTGTTGCTGACATAAGTTTTTTCTACTTCATATCCTTCAGATACT-AGATTTGCGCTGCATCTTGGAATTCATCTACACTTAAAATGCCACCTGCGATTGGAGGGCCAGTGGGATACACCCCCCCAGATGGAGGCTGGGGGTGGGCAGTGTTAGTCGGAGCCTTCATTTCTATTGGCTTCTCCTATGCATTTCCCAAATCCATCACTGTCTTCTTTAAAGAGATAGAAGTTATATTCAGTGCAACGACCAGTGAAGTATCATGGATATCATCTATAATGTTGGCTGTCATGTATGCTGGAGGTGAGTACCCACCGCTCCTCTGACTTACG----TCTGACTTACGTTGGGCAGCCAGAGTC----------------TGGACATTTTACTCTCTTGCTCAG--------------------------------------------------------------------------------------TGTTACTTCCTGAAG----TGTTGTATTAAG---CGTGCTTTTCATCTCTGACAACACTGGCAGCTCTTACGCCCTTATCCCATTGTGGCTTTTTGGAGCAGAAATGAA-----------------------------------------------------------------------GTGCAAACTTCATTTCTCTTGCTCTCTGCCAGATACTTGAAAAGTAAACATTTTAAATATTGAGTTGCAAGAT----TTTAAAAAGTT------------ACTCAAGTGTCTGGAACTAGTATAGTTCAAAGTCTCAGGTAAAATTTGTAATTTAA--GGACTAGGCTTGTCCCACAAGCACAGAGAGGTGAGGACAACCGGCGAGCCCCCCCACCCCACCCCACCCCCGGCCCCTTTGGCTCGCATCCTCATATGCATGTGCACACCCAAGAGA---CCAGCTGAAT-------AAAATCTTCACTTGTTCCTGTGATGTT--------GTAGGCT-----------------------CTAAAGGCATTTTGG----------------------------CTGCACTTAAA----------------CTTGAATTGTAT--CTATTTTCCTTTTTGTTTTCTTTGGCATG----GTGTGAAGGCTATGTAGAAAGTAAATTGCTTATTTAAAACG-TGTTTATTTTACCTGGAGATGTCAAACCACAATTAAACATG--AAAGTTAAACCTACCATAAAACTTGAGGAATTCTG------------------GGGCAAAGTATTTTTGTTTAGCCAGGTTGGCAGTGTTCCATGTTGTCTT
s HiC_scaffold_1 115109610 1289 - 233722169 TTACTACACAAAATGGTTTTGTG-AGAATATTTTCTGATTAATATA--CTGTTTTAACTTTATGTCCTTTAGATATTTGGATTTGAGCTGCATTTTTGAATTCATCTGTACCTAAAATGCCAGTGGCCATTGGAGGACCAGTTGGATATACCCCCCCAGATGGAGGCTGGGGGTGGGCAGTGGTGATTGGAGCTTTCATTTCTATTGGCTTCTCTTACGCATTTCCCAAATCCATTACTgtcttctttaaagaaattgaaagtatatTCAATGCTACCACCAGTGAAGTGTCATGGATATCCTCTATCATGTTGGCTGTCATGTATGGTGGAGGTAAGTAGCCA--------TTAAGTTGTGCTCTTCTAATTTTCATTAAGCAGCCAGAGTCTCTGTATTAGGTAATGTCGTTGTTTTAATGTCTTATTCAGTTAGATATTTCAGAAagttacttcttttcttttttctttttttttttttttctcctgtaccagggatcaaactctcgaccttgtattgttattttttgaagcACATATTGTTTTTAGGTTCACATTTTCCATTCCTGATAATAAGGG---------TGTTCTTGTTCCACTATgattttctgaaacaaaaatgagaaattctaaAACCTCTGATTTTCTCCAATTTGATTATCATTGAGCTTTAAAAGCTCTCATAAAAATAATGTGTCCAtaactggttttgtttgttttttacttgacTCTTGAAATACAAGCACT---AACATAGATTTATAAATTAATGtttgaagaattaaaataaatcagactcagctG------AATAGCATAGTTC-AAGCCTCAAGTAAAATCT----TTTAATGGTGTTAGAATTGAAT--AAAACTTAAAGAATTGAATAAAGCTT-----------------------TCCCTTGTCCTTT------GTAATTTTGTGTGT---------CCTAAAAGAATTTCAGCTGAGTTTTACTGGATGTGGtcgtgcatgcctgtaatcctagcactggggaggctaagccaggaagatcactatgagcccaaggccagcctggccagccATCTCACATAGTGAGAGAtgacctgtctttaaaaaaacaacaacaacaccttAAGTTTTATCACTTCTtccccttctgttttctttggcaTGCTTCCTATAAAGGCTGTGTAGAGAGTAAATTACTTATTTAACATGCTGTTTGCTTCCCCTTGAAACATCAGACCACAATTAAACATGTAAACATTAAACCTACCACAATACTTAAGTAATTGTGTAGTTGGCAGCAATACCTAAGCCAACTACTTTTGTTTACTAGGATTGACAGTTTCTTGTGTAGCCTT

a score=13117
s chr3           104649217 326 + 160039680 TTGTTGCTGAC-ATAAGTTTTTTCTACTTCATATCCTTCAGATACT-AGATTTGCGCTGCATCTTGGAATTCATCTACACTTA-AAATGCCACCTGCGATTGGAGGGCCAGTGGGATACACCCCCCCAGATGGAGGCTGGGGGTGGGCAGTGTTAGTCGGAGCCTTCATTTCTATTGGCTTCTCCTATGCATTTCCCAAATCCATCACTGTCTTCTTTAAAGAGATAGAAGTTATATTCAGTGCAACGACCAGTGAAGTATCATGGATATCATCTATAATGTTGGCTGTCATGTATGCTGGAGGTGAGTACCCACC-------GCTCCTCTGACTT
s HiC_scaffold_1 115215873 334 - 233722169 ttattgtttattatatactgtttct-ttttgtgtctttcaGTTATTTGGGCTTAAGCTGCACTTTGGAGTGCGTCTTTCCTTACAAATGGTGTGGTCAAATGGAGGTGCAGTAGAATACACTCCTCCAGATGGAGGCTGGCCTTGGGCAGTGGTTATTGGTGCTTTCATTCC-ATTGGCTTCTCTAATGCATTTAGCAgatctatttctatattttacaaagaaattgaagaaatatttaatgCCAGCACCAGTGAAGTGTCATGGATATCCTCCGTCATGATTGTTGTCATGTATGGTGGAGGTAAGTAGCCACTAAAATCAGCTCTTTTAACTT

a score=13097
s chr3           104650798 257 + 160039680 TCCTAGTTGAAATGATCTACCTTCGCATTTAGCCTTTCTTTTATAGATGT--GGGAAT---------TTGTACTACTACATTTTTGGTTCTCTCCTAGGTCCTATCAGCAGTATCTTGGTGAATAAATACGGCAGCCGTCCAGTAATGATCGCTGGTGGTTGTCTGTCTGGTTGCGGCTTGATCGCAGCTTCTTTCTGTAACACAGTACAGGAACTTTACTTGTGCATTGGTGTTATTGGAGGTGAGTGGCTACTGATTCATTTCATA
s HiC_scaffold_1 115113096 265 - 233722169 TCTTAGAGGACTTGTCATATATTCTCATTCA---TGCCTTACATAGATGTCAGGGAATAAGTTTCCTTTGTACTTCTAAGTTTTTTATCTTCTCTTAGGTCCTGTCAGCAGTATTCTGGTGAATAAATATGGGAGTCGCCCAGTCATGATTGCTGGTGGCTGCTTATCAGGCTGTGGTTTGATTGCAGCTTCTTTCTGTAAGACTGTACAGCAACTTTACTTGTGTATTGGAGTCATCGGAGGTAAGTTGCTGCTAATTTTTCCCCTA

a score=12623
s chr3           104650857 204 + 160039680 TACTACTACATTTTTGGTTCTCTCCTAGGTCCTATCAGCAGTATCTTGGTGAATAAATACGGCAGCCGTCCAGTAATGATCGCTGGTGGTTGTCTGTCTGGTTGCGGCTTGATCGCAGCTTCTTTCTGTAACACAGTACAGGAACTTTACTTGTGCATTGGTGTTATTGGAGGTGAGTGGCTACTGATTCATTTCATATTTATT
s HiC_scaffold_1 115217148 204 - 233722169 TATCACTAAGGTATTTGTTCTCTCCTAGGTCCTGTCAGCAGTATTCTGGTAAATAAATATGGGAGTCGTCCAGTCATGATTGCTGGTAGCTGCTTATCAGGCTGTGGCTTGATTGCAGCTTCTTTCTGTAGCACTATACAGGAACTTTACTTGTGTATTGGAGACACTGGAGGTGAGTTTCTgctaattaatattatttttttt

a score=22483
s chr3           104652649 400 + 160039680 TGCCCCACTTACTCTAATGTCTTTGCTTAGTAAGT-AATTGAAGAGATACTTCTG---TTTATGACAGTGTGTGCTATCTCTGCTCCTTTC-CCTAGGTCTTGGGCTTGCTTTCAACTTGAACCCAGCTCTGACTATGATTGGCAAGTATTTCTACAAGAAGCGACCACTGGCCAACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTCTACCCTGGCTCCACTTAATCAGGCTTTCTTTGATATTTTTGACTGGAGAGGAAGCTTCCTAATTCTTGGGGGCCTCCTCCTAAATTGTTGTGTAGCTGGATCCCTGATGAGACCAATAGGGCCTGAGCAAGTCAAGCTAGAAAAACTCAAGTCCAAAGAATCTCTACAGGAAGCTGGAAAATCTGATGCAAAT
s HiC_scaffold_1 115218434 403 - 233722169 TGTTCTCTTTCCATCAGTTTCCTTGTCTAGTAAATTAATACCAAACATGTGCCTGGCATTTATTACAGTAATTAGTGTTTTTCCCCCTCTCTCCTAGATCTTGATCTTGCCTTCAACTTGAATTCAGCTCCGACCATGATTAGCAAATATTTCTACAAGAAGCGACCATTGGCCAATGGACTGGCCATGGCAGGCAGCCCTGTGCTCCTCTC-ACCCTGACCCCCATCCATCAGGCTTTCTTTGGTATCTTTGGCTGGAGAAGAAGTTTCCTAATTCTTAGTGGCCTCCTCCTAAACTGCTATGTGGCTGGATCCCTGATGCGACCAA-AGGGCCCAAGCCAGCCACGACAGGAAAAGTTCATGCTAAAGAATCCCTTCAAGAAGCTGGAAAATCTGATGCAGAT

a score=61868
s chr3           104652649 984 + 160039680 TGCCCCACTTACTCTAATGTCTTTGCTTAGT-AAGTAATTGAAGAGATACTTCTGTTTATGACAGTGTGTGCTATCTCTGCTCCTTTCCCTAGGTCTTGGGCTTGCTTTCAACTTGAACCCAGCTCTGACTATGATTGGCAAGTATTTCTACAAGAAGCGACCACTGGCCAACGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTCTACCCTGGCTCCACTTAATCAGGCTTTCTTTGATATTTTTGACTGGAGAGGAAGCTTCCTAATTCTTGGGGGCCTCCTCCTAAATTGTTGTGTAGCTGGATCCCTGATGAGACCAATAGGGCCTGAGCAAGTCAAGCTAGAAAAACTCAAGTCCAAAGAATCTCTACAGGAAGCTGGAAAATCTGATGCAA---------------------ATACAGATCTCATTGGAGGAAGTCCCAAAGGAGAAAAGCTGTCCGTCTTCCAAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACCCATAGGGGCTTTTTACTGTACCTGTCTGGAAATGTGGTCATGTTTTTTGGACTCTTTACCCCTTTGGTCTTTCTTAGTAGTTATGGTAAGAGTAAGGATTTTTCCAGTGAGAAATCAGCCTTCCTTCTTTCCATTTTGGCTTTTGTTGATATGGTAGCCAGACCGTCCATGGGACTTGCAGCCAACACCAAGTGGATCAGACCTCGGATCCAGTACTTTTTTGCTGCTTCTGTTGTTGCAAATGGAGTGTGCCATTTGCTTGCCCCTTTGTC---TACAACCTACGTTGGGTTCTGTGTCTACGCCGGAGTCTTTGGATTTGCCTTTGGTTGGCTCAGCTCTGTATTATTTGAAACATTGATGGACCTCATTGGACCCCAGAGGTTCTCCAGTGCTGTGGGCTTGGTGACCATTGTGGAATGCTGCCCTGTCCTCCTAGGGCCACCACTTTTAGGTATAGTATGTCTCCCTACATTTTTGTTTCTGATCCAGTTATAAAA
s HiC_scaffold_1 115114243 995 - 233722169 TAcacctcttattttattttacttgtctaATTAATTAATCTCATGTAC-CTGGTGTTTATTACAGTAATTAgt-tttttccccctcttcctAGGTCTTGGACTTGCCTTCAACTTGAATCCAGCTCTGACCATGATTGGCAAATATTTCTACAAGAAGCGACCATTGGCAAATGGACTGGCCATGGCAGGCAGCCCTGTGTTCCTCTCTACCCTGGCCCCCATCAATCAGGCTTTTTTTGGTATCTTTGGCTGGAGAGGAAGTTTCCTAATTCTTGGTGGCCTCCTCCTAAACTGCTGTGTGGCTGGATCCCTGATGCGACCAATAGGGCCCAAGCCAGCCACGACAGGAAAAGTTCATGCTAAAGAATCCCTTCAAGAGGCTGGAAAATCTGATGCAAGAAAAGATGCAGGTGATGCAAATACAGATCTCATTGGAGGAAATCCCAAAGAGGAAAAGCTGTCGTTCTTCCAAAAAGTTAATAAATTCCTGGACTTGTCCCTGTTTGCCCACAGAGGTTTTTTGTTATACCTCTCTGGAAATGTTGTCATGTTTTTTGGACTCTTCACACCTTTGGTTTTCCTTAGTAATTATGGCAAGAGCAAAAAGTATTCTAGTGAGAAGTCTGCCTTCCTTCTGTCCATTCTAGCTTTTGTCGACATGGTAGCCAGACCTTCTATGGGACTTGTGGCCAACACAAGGTGGATACGACCTCGAGTTCAGTATTTCTTTGCTGCTTCTATTGTTGCAAATGGAGTGTGTCATTTGCTAGCACCTTTTTCCGTCAGCACTTATGCTGGGTTCTGTATCTACGCTGGATTCTTCGGGTTTGCTTTTGGATGGCTCAGCTCCGTGTTATTCGAAACCCTGATGGATCTTGTTGGACCCCAGAGATTCTCCAGTGCTGTAGGATTGGTCACCATTGTGGAATGCTGTCCTGTCCTCCTGGGGCCACCAATGTTAG-----GTATGTCTTTGTGC-TCTGTGTCTCT------GTTATAAAA

a score=22959
s chr3           104653098 504 + 160039680 AAACAATTAACAAATTCCTGGACTTGTCGCTGTTTACCCATAGGGGCTTTTTACTGTACCTGTCTGGAAATGTGGTCATGTTTTTTGGACTCTTTACCCCTTTGGTCTTTCTTAGTAGTTATGGTAAGAGTAAGGATTTTTCCAGTGAGAAATCAGCCTTCCTTCTTTCCATTTTGGCTTTTGTTGATATGGTAGCCAGACCGTCCATGGGACTTGCAGCCAACACCAAGTGGATCAGACCTCGGATCCAGTACTTTTTT------------------GCTGCTTCTGTTGTTGCAAATGGAGTGTGCCATTTGCTTGCCCCTTTGTCTACAACCTACGTTGGGTTCTGTGTCTACGCCGGAGTCTTTGGATTTGCCTTTGGTTGGCTCAGCTCTGTATTATTTGAAACATTGATGGACCTCATTGGACCCCAGAGGTTCTCCAGTGCTGTGGGCTTGGTGACCATTGTGGAATGCTGCCCTGTCCTCCTAGGGCCACCACTTTTAGGTATAGTATGTCTCC
s HiC_scaffold_1 115219922 498 - 233722169 aaaaagctaatgaaTTCCTGCCCTTGTTGCTGTTCATGCACAGAGACTTTGTTCTCTACCTCTCTGGTAATATGATAATGGCTTT-GGACTGTCCACACCTTTGCC-------------------AAGAGCCAACATTATGCTAATGAGAA----GGTTGCTTTCTgtctattttgtcttttgtttacaTCAAAGCCAGACCTTCTAAGGGACTTGTAGGCAACACAAAGTGGGTAAGACCTCAAATccagtgttttttttgttttgttttgttttttgctgcttCTATTTTTGCCATGGGCGTGTGTCATATAGTCCTACCTTTTTCCACCAGCTATATTGGGTTCTCTGTGTATGCGGGATTCCTAGGATTTGCCTTTGAGTGGTTTAGCTACATACTGTTTGAAACCCTGATGGATCTTGTTGGACCCCAGAAGTTCTCCAGCGCTATGGGGTTGGTGACTATTATGGAATGCAGTCTTATCCTCCTAGGTCCACTGATTTTAGGTAGAGTATGTCTCC

a score=68617
s chr3           104655093 2571 + 160039680 CAGAGCAGTGTTCTCCGGAAGTGCTGATA----AAGAACTTTGGCCTTGGTGATTGGAGTAGATCTGTGTGGCCTTGGACACTCAAACTTCCTTTGAATTACAGTTTAC-CCTTTGTGCAGTGAGAAAATGGATTGT----GATCTCTGA--CATTTATCATTGAGATTTGCCAAGAGTTAATTGTTGCCAATTTG---AAAATA---GAAAATACAAGGCCAGTCAAAA-TCAGGAA-CACTATAAATAGAAAATCTT-GCAGTTCATTTTT---------GGTCC--------TTAGGTTGTGGGCTCTGAAGGTTGCTCTGCATCTTTCTGAGTAGATCCTTGCACTTGCTTGCTCTTACCCACATAGC-CTTGTCTTCTGCATCTT--AGGCCGCCTCAATGACATGTATGGAGACTACAAATACACGTACTGGGCTTGTGGCGTGATCCTCATCATCGCGGGTATCTATCTCTTCATTGGCATGGGCATCAACTATCGACTTCTTGCCAAAGAACAGAAAGCGGAGGAGAAGCAGAAAAGGGAAGGAAAAGAGGACGAGGCCAGCACCGATGTCGACGAGAAGCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAGAGCCCTGTCTGA-CCTGTGAAGCCTGGAGAGAG------CAGCGTGTGACCCACGACATCCAAAACCATCCTGCTGGCCTCTAGTCTACCAGTGGTGCTCAGTGCAGACAGTGGACATTTGTGTGGAAAACCTACCGGGTGTTCATTGGTGGGATTTTTTTTTTCACTCCTTACCAAT-GCCTGAATTTAAAATATACTATGCTTTAGGTAGGGAGTGGTTGGCAAAGGATATGGGAAAGAAGTAGTGATTTTCTTTTTGTTTGTTTGTTTTGTTTTAATCTTAGCTTTTAACAGTGTCATGAAGATTATAATATGTGCCTTAAGTTTTAGTTTTTAGAACT-CTTTAGAGAGCCTTAAC-TTTTAAAACCATTCTGCTGAATTCATTTGTTTTAAATGTCATTTTAAAAGGAAAAATAACAACTAGCTTGCTTGAGGTAACT---AACCTTAATCTTGTTTTGTTGTTGTTTGTAATGCTTTGTCAGACATTGTTACTGGAACATTTATGAATAGAGGTATTGGTTA------------------------------------------------------------------------------------------------------------------AAAGTCGC---------------------------------AGGTTTATAAAATACTGACTAAAGTATTTTTCTAGCATTA-TAGTTGCCTGGCATATCCACCTGCTAGGTATATATTTAAGAAATTTGAAACATAAAATTTTGGGAACATCTTGGCAGTTCCAGCCACAGCCTGT-------CACCTGCTGGGCAC---TTCTCAAATGCTTACT-ACAGCCTCGTGCTGAAG---TGTTATCACTAAACTGTCACCTTTGCT--CCTATTCAGAGACACT-----------GAAATCA-------------------------ACTGCAAAAGGTTAGTATTAACATCTACAAAACAA------------CTCTTT---------AACACGTCTGATTTAATGTATGCAG-TATTTCAAGCAGCAGCTGAATTCAGTGTA-GGTTTCCCCAAACCTTA-------------GTTACGGTATGAGAATCTTAG-GTATGTGTGGGTTTGAGG---GGCTCTgagg-------tgttggttcttaggtttgaacccagggccacaagcatgctaagtgcatgctgtaccactgagccacaacccACAGGCACCCTGGAATC-CTTCTCCTTGACCCCTGAAACCTTTTCTCTTGGTTTTTGATAGTTCCATTTATACCACTACTAGTTTAGAGCTGTATGTGGGATGATTCAGTACCGAC------------TGAATGGATGTGCTTTTGTTT--TTTTTACATTGTTT---TTCAGTATTTGCAAAACCACGAGGGTTAGAGTT---TGGCCTCAGGGAAGCCAATAAAGATAAAATGGGAGGAA------------------------------------------GTTTGCTGAG----------AACTTGTATCATGCTTTACGATTATTTGACATAGTCTTACCTC-----CACACCTTAACTTTCATGACCCTTTCACTCACCTGAAATGTAGAAAAATGGGTTCAGTGTAAGGATAA-GAGGAAAGATGGACCAGATTGGAACTACAGTGTTTTGGGTTTTTTTTTTTTTTAACCTGATGTCTTCTGAATAGAGGCAGAAAAAAATAAGACATATGACACTGAATTGTACTCAATGTGTTTAAAATACCATTGTAATTGACAGGGTGAATATAGATTTAAAACCTTGTGTAAGAAGCTGACTTTTTCCAAATAAAACATTTATTTTATTTTTAG-AAAACAGTTCTTCCGC----ATGTTTATTTGTGAGACATGTTATTTTTGTCTTCATTCTTACTAATTTTTATTTTATTTTAAC-CTTTCTAATATTGAATCGTCCA-TTTATATACCTT--GACTCGTACATATGGTTCATTTTATGTTGATTTTCCTCC--TTTAGTTAAGACAAGCAGGGAAGGATTTTAAGACCGCATCTTGAGCTGAGATCCCCTGATGCTGTTAGCCTTAAGACACTGTGGGAACCACCTTGCAATATAAAGTGTTGTGGTGAGAATGTGGTGAGAATTTAGAGAGGAAAC-----CTTGAAAGTTTACACAGACATCAACTGGTTTGGACTCT--TATCTTCTGTGAAGCCATGT-CATACTTCTGTGAACCTTTCTCTTCTATAAAAATGAAAGTCTCTGTTGATGGTGGA
s HiC_scaffold_1 115117383 2799 - 233722169 CACAGCACACTCTTTAGGAAATGCTGACAGGAAAACAGCATTGCCCTTGGTAACTGGAATAGCTCTATG--GCCTTGGACA---AGACTT---TTGAGCAATAATTTTTTCCATTATGTGTTAGGAAGATTGACAGTAAGTGATCTTTGGATCTTTCCTAATTCAAATTTGCCAAGAGTTTGTTACTTTCGGGTTGTTAAAAGTATCAGACTATCCAATTCCAtccaaaaatcagaaaatacagaagataagaTACtttagtagtttctttttttaaatattgatttgtcatagattaGATTAAGatctttatgaaatttttttaagCTTAAAGAAAAGATAATC---CTTGTTAACTTTTAATTACATAGTGTTTGTTTTAAACATCTTTTAGGTCGTCTCAATGACATATATGGAGATTACAAGTACACATACTGGGCATGTGGTGCAATCCTAATAATTGCAGGTATCTATCTCTTCATTGGTATGGGTATCAATTACCAACTTctggcaaaagaagaaaaagcagaggaaaagcagaaaaatgaagaTAGAGAGGAAGAAACCAATATAGATGTTGATGAAAAGTCCAAAGAAGTAACTAAAGCAGCAGCATCTCCAGAACAGAAAGGCACAGGAGAccccaaagaagaagaaagtCCAGTCTGAATCTGTGGCGC-TGAAGGGTGAATGGACAGGTCATGGCCCAACTCTTCTGAAAATATTCGACTCGCCTGTAGTCTACCTGTGGTGCTCAGTGCAGACAGTGGACATTTATGTGAAAAACATACCAGGTGTTCATTCATGGAA-TTTTTGTTTCACTCCTTAACAACAGTCTGAATTTAAAATGCCATATTCTTTGGAGAAGGAGTGGTTGGCAAAAGATGTGGGAAAGAAgtaggg---------ttgt---tttgttttgttttgatcttagCTTTTAACAATGTCATGAAAATTATATTATGTGCCTTAAGTTTTAGTGTTTAGAACTCCTTTAGAGAGCCTTAACTTTTTAAACCCATTCTGCTGAATTC-TGTATTTTAAGTGTCAGATTAAAAGG-CAAATAACTACTAACTTATTTGAGACAGTTCTAAAATTTAATCTTGCTTCATTGTTATTTGTAAAATACTGTCAAAAC---GTACTGAGACATTTG-GAGTAGAGATATTGATTATATTGGTTGAaacttttcttgttcttaatactggggattgaactcaggacctttgaacttgagctacatccctaccccttttaaattttgtttcattttcagacaggatgttgctaagtcactaagtagctctggctaggcttgaacttgtgggaagttttataataaaatg-ctaaaatatttttctagcatCAGTAGTTGCTTGGCATATGTGCCCAATAGCTATATATTTAggaaatttaaagcataaaactT---GGACATCTTGGCTAATCCATCCACATAGTATTTGTCAACATCTCTTGGTTACCTTTTCTGGAATACTTACTGGAAACCAAGTATTTGAGCATTGTTTTCACTAATTTACTATTTTTGCTCCCCTATTCAAAGATATTTTGAGTAGATATAGATCATTGcccattttgaattatttctctcactataaa-----agtattaaaatctaaaaaattatatatttcatgGCTCCTTACTAAATACAAAACATCCAGTTAACTATGAACAGATACTTCAAGCATCAACTGAATTCaacttatatttttttcaaagcttAACGATACCATATTATGAGGCTATTAAAatctttgtgtttgtgtgtgattttggttttgtttttagggGAATTttgttggtgctggggattaaacccagggcctcaggcatgctaaATA---GACCTACCACCTTACTACA--CTGCCAACCCCCtagagtctttttttcttttttcatggaaTTTTTCCTCTTCAATTTTGGTAGTTTTATCTG------CCTTTGCTTCTAGCTATATGCAAGATG-TTCAGTATagataaaatgtgtgtgtgtgtgtgtgtgtttttgttttgtttttacattttttttcttcagtgtttgcaCATTCAGGTGCACCA-AGTTATGTGGCTGTAGGCAAAccaataaagataaaatttggAGAGATATTGTAAAATATGCATACTTTCAGtaaataattcctttttattttctgagatggcttaaaaatttttattatac-ttaGAATTATTGAACAC--TCTTATTCTGGACACAAACCTGAAGTTTTATGAGCATTTTCACCA-CTGAAATGTAGAAAAATCAGTTCAGTATAAGAACAGTAAAAAAAGGTGGACTAGAATGaaaccaaa---------------tatttttttaacctaATGTCTGA-AAATTGAGGCAGAAAAATGC-AGACAT---TCAGGGAATTATATTCAGTG------------CATTGTAATAAATA-GGTG---atagatttaaaattttgtgtaagATGCTGACttt---caaataaaacattcattttatttttagaaaaatatttcttcctccaaaatgtttatt----------------------ttcatt--------ttattgtttcagCTAGGTGCTTGCTAATATTAAGTCATCCAGCCTGTGTGCCTTGAGATTTGTATGTATGGctttttttacattgatttttctccatttctgtt---cCTTGC--------TTTTTGAAACCTC-TCTTGAACTAACA---------GGAGTTAGCCTTA--ACAGAATGAAAAACCCTTTGGGAT---GAGTGTTACAAC--AGATGCTG-GAGGAATTGGAGGGCAGAAGGTTGCTGAAAGGCTTGGGC---------CCAATTTGGGCTCTGCCATCTTCCATGGACCCAAGTATAAACTCTTGTG------TGTCTTCTATACAAATGAAGATTACCATTGGTGAGGAA

a score=8612
s chr3           104655401 565 + 160039680 GCACTTGCTTGCTCTTACCCACATAGCCTTGTCTTCTGCATCTT----AGGCCGCCTCAATGACATGTATGGAGACTACAAATACACGTACTGGGCTTGTGGCGTGATCCTCATCATCGCGGGTATCTATCTCTTCATTGGCATGGGCATCAACTATCGACTTCTTGCCAAAGAACAGAAAGCGGAGGAGAAGCAGAAAAGGGAAGGAAAAGAGGACGAGGCCAGCACCGATGTCGACGAGAAGCCAAAGGAGACGATGAAAGCTGCACAGTCGCCGCAGCAGCACAGCTCCGGGGACCCCACAGAGGAGGAGAGCCCTGTCTGACCTGTGAAGCCTGGA----GAGAGCAGCGTGTGACCCACGACATCCAAAACCATCCTGCTGGCCTCTAGTCTACCAGTGGTGCTCAGTGCAGACAGTGGACATTTGTGTGGAAAACCTACCGGGTGTTCATTGGTGGGATTTTTTTTTTCACTCCTTACCAATGCCTGAATTTAAAATATACTATGCTTTAGGTAGGGAGTGGTTGGCAAAGGATATGGGAAAGAAGTAGTGATTTTCTTTTTGTTTG
s HiC_scaffold_1 115232755 412 - 233722169 gcagttacctg---ttaccaacaagagc--gccctctgtctcattggggggctgcgccggt--cataTATGGAGACTATAAATATGCATACTGGGCATGTGGTGGAATCCTTGTTTTTTCAGGCATGTATCTTTTCATCAGCATGAGCATCAATTATCGACtt--------------------gtgggaaaaacaaaa------------------------caaaaacaaagcttaCGAGAAGC---------------------------------------------------------------------ATTCTGTCTGA------AAGCGTGGATAAGAAGAGAAGCTTTTGACTAATA----CTAGAAACATTCTGT---------GTCTACCAGCAGTGCCTTGGGGAGAC--TGGAGGTTTGTATGGAAATCGTACCAGGTGTTCATTGATggaacttttatttcatttctccacTAAAA--TAGATTTATCATAT----TGTTTGAGGGAAG--GTGATTTGTAAAAGAT----GAGAGAAATAG--------CTTTTATTTG

a score=27963
s chr3           104661600 1880 + 160039680 agttcgaggccagtcagggctacacagaaaccctgtcaagaaaggacagaaGAAAAATATATGTAAATCTGAATGTCCTAGAATATTCTGCAGTGCAACAGCAAATCAGT--AGTTATGGGCCTAGAAACAGTGAATAAAGGGCAGCTGGTAAGGGCAGAGCTCACTGGTTAGACGAAGGTTT------------------------CTAATCCA---CCAGTC-------------------TCAAAGTGCGGAGCCTGCATCCTGCCTGAGCATCTTCCTTGTCAGAAGAGGCCAGAGCAGGGGCTGAGAGTAGGGTCAGACAGAGGTTCTGGAAGTAAACAGAAAGAGAGGAAGGCAAATCCTGG-TGAGCCCAAGGCCAGTCTCAAGCATCCCACACAAAACTGAGTGGAGCGACTTCTG--TCCCCAGCAAGCCACAGTCCGGTTTGTGATTCTTTTCCCTCAgctttgaaattcataacgtgattggtttttatttgtggctttccttttgctaatatgctttactgattccagaattaaaacttagcatgtcctgagcttaccgctggccagatcccaagaggaaatggctagaagccattaagagggccaggggggaa-ctgcactgggattaacagtcaccTGGTGTGCTGAGAGTCTGTATGTGCATAATTACTAAAACAAGGCTTGTGACTGGTCCTCTCTT--------ATCGTCCCTACTGCTCAGTCATTCCTTTTTA---------------------------------AGGCCTGAGTGTTCTCA-CCAGGCTCTGTATGGGCTTCTAAGAATGGGAGCTATGTAGGTAGTAGACATTTTGTTTCCTTTTAAATTTCAAGGACCGCAccagtaagatggctcagcaggtgcttgccgccaagccttactacccgagttaccgaacccacgtgggagaactgaactgattcccacaaattgtcctctgaAACACACACAAATAGATAAATGTAAATTTGCAAATTAAATTCTTAATccttaaattctgccttgggaggcaaagtcaggtggaactcctgagttcaaggacatccagaactacatagtgaggccttgtctccaaaaaaaaaaaAAGAATTTCAAATACTATTTTGTTTCTCAGTGGTAAGGGTGGGTCAGCAAGCCTGCTGCAGCGAAGGCTTCCTAACGCCAGGCACTTTGGAAGACACCTTAGGTGTTCAACCTTATCTCCTCT--TAACTGGCCCCTCATACCTCCCAGCCGCCAAG-----------------------------TCCGTCCTCTGTCTCCCTGCAGTTGGCCTGGTTTCTAAGAACCTCCCTGACTCCTCTCTAACTATTTTGTAATCCAATCCAATACCATTGTCAACACAGTTTTTCTAAAAGGATCAAATTTCTTAGCATTGTTACtttaaaattaaaaaaaaaaaaaGAAGCCCTATTCAACTTGTATAACTTTAAACAAAAGCAATAAAGATAAAAATAATAAA----AATCATGTCGTTCCTCTACCTAAAAACCTTACTGCTTGAGGATAAAGTCCAAACTCC-CGGCCTGACCCTTAGGGCCCCTCCCTGGTAGATAGCTTCAGTCCAGCCTTGCAT-CTTCGCTCTGGCTCGTCCTCAGCCTACGTCTGCTCTCCACC----CGGACTGCCCTATTC----AGCAA------------------------------GACCTGTTCCAGGGAACCCCGCCCTGTTTCAT-------GCCACCTCCAGTTCATCCT-------------------------TTGCTAGTTTGGTTTTCTTTGTCCCGACT------GACTGCTTGAAGACAAGTAAGGAATACCCTGC-AAATGCGAGTCGCCTTTCGATTTTAGAGTCTAAGGACGTTTCTGCAGGAGGTGTCA---GGCTGTGGAGAAGGCAAGAGAAAGCTTCCCAAGCAATCTGAGTGCTGGCCAGAGGTGGAAGGAATAGGCAAACCTGCTACTTGACTATGCGCCAGCCCTGGGTTAGCCTGGCCTC--TTCTCCAGCAGTTCTCACTCT
s HiC_scaffold_1 115125745 1807 - 233722169 agttcaaggccagcctaggcaacacagGGACCCTGTC--------------------------------------TACTTCAACATACTCTAATG-------AAGTCAGTTAAGCCATCAACC--AGAACAATAAATAAAGAACAGCTGATATTGGCATAGCTTATCAATT-TACAcaggtttttgaaatatattctaaCATCTAATCTGATCCATACCAAATCCTAGAGAAGTGGGTATAATTGAAGGTACTAACCCTGTAACAGCCTT---CATCTGAGATGTCAAATAAG---AATGCTAGAGCTGAATGTCATGT---------GGTTTGGAAATATACAAGAACAGAAGAGGCCAAATCCTGGGTGATCCTGA----AGGGTGAAGAAT---GCACCAAAATG--TGG------TTCTGGTCCCCCAAAACTTCATAATCTAATTAACAATCCTTTTGCTT-GGCTTTGAAAttctcagtgtgattt-ttttcatttgtggatTTCCTTTC-CTAATATGCTTTACTGATTCCAGAATTAAAATGTTGCATTTCCTGAGCTTAT-GCTGGCCAGTTCCCAAGAGGAAGTGGCCAAAAGCCATTAAGAGGGCCAGGAAGGAAACTGGACAGGGATTAAAAGTCACCTGGTGTGCTGACAATCTGTATGTGCATAATTATTGAGAGAAGCCTTGTGATTGCTATAGTCTTGGtgatacatctttttttcttcctcttcatttctttGTAATCTAATTCCTTAAACCTCCCATCCTACCCCCCAAGCCTGAATGTTTTTAGTCAGGCTCTATTTATGTTTTCTAGAATGGAAACTAAG--GATTTTAGGtcaccatttttcttttaaattccaaATACTAC---------TTTGTTTCTCAAATGCT-------AAGAAT--------GAGTAAACAGACCTGCAGTAAGgggctt------ttttctttgtttgtaccgggcatcaaactc--acggccaaacat--gcttgcaaggcagatgct-------------------------------tctggtg------ctgagctaaat----tcccgggcC---TAGTAGGGGCTTTTCT-------AAGAGAGGAACCTTCA---------------------GGTTAGGGTTAGGCAGTA--CCTAC--------------CTGTGCACCAGCC------------------------CATCCTTATCTCCTTTGCTACCT---CCCACAAACCTAACAGTTAACAAATCATGTATCTTCATCTCCtttgctgtttttccttcctgtccctccttttctttttctaggtctCTAAAAACCTCCCTGACTCTGTTCTCACTCCATT----TCCAATCCAGCC------TCAACACTGCTGCTCTAAA---ACCAAA--TCTCAGcactgttacttttaaa----------------aatgtttatacaatctttataattttaaac--aagcaataaagataataaaattaaaatccaatCAT---GTTCCTCTACTTAAAATTC-TGTAGTTTGAGGGTAAAGTCCAAACTCCTTAGCCTCACCCACTGGGCCCTTCC----TGACCAGTTCCTGACTACCCCTTCAGACTTATCTCCTGCCAGTCCTCAGCC----CCTGCTCTCCACCTCATCTGATTTCTTAGTTCTAAGAGCAAGCCTTTGTTCCAGGCTTCCTGACACCTGCTGCCCTGTTCCTAGGAacccctcccttctttctcctggGCACCAGTTCTTAGTCATCCTCTCCTAACACTGCTGCACATTGTACTCACTAATTTGCTTTTCTAAATCTCTACCACATTGAGCTGCTTG-AGATGAG-AAGGAACAGCATGCAAAATGAGAGGTCACTTTTGATTTCAGGGACTGGAAAAGCTGCCAGGAAAGGTTGCATTTGAGTATGGTACAGA-AAGGAAGAGCATCCTGGGAGAGCTGTG---GAGCCCCTGGTAGAACTGATTGGCAAGCATGTG--TTCATCACACTTATGTTCTAAACTAGCCTGGCCTTTGTTTTTAAGAAAGTTTCAGTCT

a score=7937
s chr3           104666989 212 + 160039680 aaataaataaataaatGCTGCTTGAAAAAAAAATTATTCCAGCATGGATATGTGGTTCATAACAGCAGATTGAGCCTCCCAGGA-TTTAGTATCTGCCAGGAAGGAATGGTTAGGTGGTGTCCATGAGTCAGATTTTCGACAGATTTCCTAGCAGCTGTTTCCCAAGTGTTGGCAAGACTTCTG---CCACAGAAAGCCAGATGGTGACACATGTC
s HiC_scaffold_1 115130417 204 - 233722169 aaaaaaaaaaaaaaa---------aaaaaagaattattccaG-GTAGTTACGTGGTTTGTAGCAGGAGAAAGGAGCTCTTAAGAGTTTAGTATCTGCCAAGAAGGAATCATTAGCTGGAGTCAGTGAGCCAGATGTTTGACACATCTCACAGCAGC--TTTTCCAAATCCTAGCAATGCCTCTTTTCTCCCAGTAAGCCAAATGATGAACCATTTC

a score=40820
s chr3           104670058 2033 + 160039680 AAGGGACATTTCTCCC-ATGAGCTTGACGTCAGGACCAGTCAGCCTGGCTCTCCCAGGCACCCCACACC------TCCCATTCTGGGTCAGGCCAGC----------AGGGACTATCCCAGG-CTGTGCTGAAGGGCTGCCCAGG-AAGTACCAA-----TTCCCTTGGGTACCTGTCTTCATGG-GGTCAGTCCAGGCCTTTGCTCAGGAGCCCT---CTGTGACCTTTCTAGCATCTGGCATTCAGTATCACATGGCTCACAAtacagtgaaaggatagactaggccttggggtcaggaaaacctgaggtca-agcctgtcact--cactggcctcatggctctgggcctgtaaaactaacactccttgagTGAGTCAGCAGGGTTC----AGCTCCCTGCAGCCACTGCAGGAGTTCTGAAGAGAAAGTGGTTTGAGATAGGGGT-------------GGGGCTGGAG----------GCAGAGGTAGAGgcagggctgagccccagagggtcctcttctctgtctgaacacaggagg-gaagctgctgagtatccaaagctaccaggagccctgctgaggtccaggctccacccatctggctgtgtgccagaagacaca-gtgtcatcacagctgc---caactgtcctctggctct--gaggtg--------gtaactgggtaccagaccctgctgcaggaaagagctcacatctgcatggccctgctggccag---agcacaaccacagcaacaggacaccatggtctcatcccacttcccccttccagatcccatgtgagggtctcaatattgatcctgtctgcaggggcctgcatgaggcaatggcaggggaagtgcagtctttaaaaagcctt-tgctagggagagacaggaaagAGGTGGGGGTGGGCTGGGCCTGGTG------------------TGGACAGTGTTGTGCCTGGAGGGCACCCGGAACAGTTCCTGGCATTCAACCACAAGAGCTGAGTAAATGTGGACTCCTGTCCCTATTCCTGCTGTTAGTAATCCATGCCTGCAGCGTGTAAGTGCTGTGCTGAGCCCAGGAAGTTGAACAGCAAGTAAAATGAAGCCACACCTTATAGCAGCAGCATGTAGACTAAGGGCACgg---gggtgggtgggtgggt----------------------------gggaggctggggtgggggtgggggGAAACGCCAGACCGAGCCCAAAGCAGATTGGTAAGTGTAAAAAGCTTGCAA---TTCCGAATGTTAAAGGTGACTCCCTGGCCTGTCTTAAATGGGCAGAAGGGACCTCTAA--------------------TATG---GCCTGTGTGAAA--------ATACTCATTTCCACCTTCAGGGGCATATATgcatgcgtgcaggtgctggaagactgaggaggtctggtgtttgtcaggagcaaacaggtcaatctaagggtggcccagcatgacaggcagagagagtggggacaagatgaaacc--agggaaagcaggg-----------------gcatatcgg---gtcattctggagagtctgggctttagctgatggggactaggggagccatgggaggcctttgatttggggtgggggtga-cattcttgttctgttctcagccatatcactttgatgtagtttgatgtagtttgtgcaccagactggaagaaggcaggactgcatgcaagatttcatttcaaattgggccatctggtctggaaataatggcagtctagaggaggatgggggtggagAGGAAGGCAGAGGGAACCTAAGGAGGTTTAGAGGAGGC----TGAGCAGCAGGGGTGAGAGG-TGGGGGCTGGGAGGAACCCAAGGCGCCTGCCAGTTTCTGCAGCAGGTGC-CACCCGATAGGGTGGGGCCCCCATCTACTCCTGGCACTTGATCCTAGGGAGGTGCCCACTCGCAT-CTCCCCGTCTCGGACTGGGCTCGCAGAAAGCCTCTTCTCTCTCCTCCACTCTATGACCTGCATGCAATTCAATTCCACCAACCATGAGGAAGTGCCCATTCCGTGCCAGGAGCCCTTAGAGACTTCTCTCCAGATTCACCAAGTGGAGTTCTGCTG-----AGCACACTGAAGCAGAGTCGGGAGATGGGGTTAGCAGGGGAGAGGAAAACTGTGAACCTTTGGCCAATAGTCAGGCCCTCTTTTT
s HiC_scaffold_1 115136942 2069 - 233722169 aagggctGTTTTTCTTGAGGAGTCTGATGT---GACCAGACAGCCTGGCTTTCTCAGGCAGCCCCTGCTCTGCTGTTCCATTCCAG-TCAGCCCAGCCTCTGAACCCGGGGGTTGGGGGAGGTCTGAGTGGCAGTGCTGCTCAGACAGGCACCGCGAGGCCCCTCTTCAGGACTGATCTGTGCAGCAGGCAGCCCAGCCCT--GCGTGAGAGTGCGGAACTAAGGCC-------CACCTGTTACCCAGTATCACACATGCTTCTACCGAGTG-------------GGTGCTGGGCTCGGAAAGACTCGGGTTCATAGCCCGTCTCTGCCACTAGC----TGGTTGTA-------AAAGAGAGAAATAGTTACATGAGTCAGCAGAGTTCTGTCAGGACACAGAAGCCACCGGAGGTATTTTGGGAAGAAAGTGATTTGAGACAAGGGTTAGGTGCTTATGGGGTGCTGGCGTGGCTGGGTAGGAGTGGTGTGGGGCAGGCCGAGTCTCAGAGGTTCTGCT-------CTgagcaggaaaggagaggagggggagcAGCTGCAGCTGCCACTGGCACTGCTGAGCCCCAGGCTCTGCCAACAGAGCTGTGATCCAGGAAGCAGGCGGGGCCTCGCTGTTGCAGTCTACTATCCCCTGTCTCCCCGGGGTGAAGGGTGAGGGACTGAACACCTGACCCTGCTGCTGGAGAAGGTGCCCATCCGCA--GCCCTGCTTCCCAGTCGAAACGAGCCAGAGGAGCAGGAAGGC--GGCCCCGCCCCTCTTCCACCTTGCCAGTTTGCTGTGATGGTTTAGTGTTGGATCCCATCCCACCGTCACTCCGGAAGGAGTTGGTCTGCAAAATGCTGCTTT-----AGCTTTCTGCCGCAGAAGGACAGGAAATAGATGGGGGCGGAT----CCCAGTGCTCCTCAGCCAATGAGGATTGATCATGTTACCCCTGGAGGGCGCCTT-AATAGTTTCCAGCATACAGTAGCGGGA-------AAATGTGGGCTACAGTTCCTGTTC----------TGTTCTATGCCT-CTGTGTGCCAGCACCAGGATGGCCCTAAGACATACAGCAGCTAACAAGACAGATCCCTA---TGCTGTACCAGTGTGTAGGCCAAAGGGAAAGCATAAATAAgttggtaaatattttttaaagttgtcaTAAAAGCCTAGGAGCATcagggctgagggctgagggGATTGCC----CAGGCTCAGCTTAGATGGGGAAGCG-AGGAGGCTGGTAAAGGCTTCTCAGGAGAAGGGT------------TGTTTTA------CACAAGG---CTCTAAGAACTAGCAATTATTCAAATTATGCAGACATGAGTAAGAGGCAGATGATACTCACTTTCATCT-CAGGGGGACATATCCATA--TACAAGTCCTGCAAGC----GGAAGTCTGGCCCTTGCCAGGAATAGGCAGTGCAGTCTGAGCAGTGCATACCAAGCAGGGTGAGAGGAGTGGGTGGGAAATGAAGCTGGAGGGAAAGCAGGGCAGAGAGGCTTCCTGGTGTGTAACAGCATGTCATTCTTGAGAATTTGAGCTTTAGCCTGTGGGCACTGGGGG-GCCACAAAAAGC-----ATCCAAGCAGGAAGAGATCATTGTGCTTCTGGTTTCAGCAACAGCACTCTGATGCAGTTTG----------TGTAACAGGCTGGAGGAGGGCACGACTGCATGCAAGAGTGCATCTGTAACGCAGTTATCTGGGCGGGAAGCAATGGTGGCCTAGAGGAGGACCGGGA-------AAAGGCTGTG----TCCAAGGAATTTGGGAGGAGGCAGAGTAAGCAGTATGGGTgagggggtgggggctgggtGGAACTTCAGGTGGCTGCCAGGTTTCG----AGGAGCACACCCAACAAGGTGGGGCCCCC-TCCACTCCTGGCAATTGATCC-AGGGTGGTGCCCACCCACAGATTCCCTGTCCTCGGCTGAGTTCACATAAAGCACCTTTCCTCCCATCCACTGTATGGCCTGCATACAAATCAATTCCACCAACAGTTAGGAAGTCCCCATTCTGtgcca--cactctgggaggcttctC-CCAGCTTCCTTTAGAGGAGTTTCACAGGATGAGGTTCTCTGAAG-AGAGATGGGAGATGAGGGTGGCCGGGGAACAG----------ACCTCTGGCCTATATTCAGGCCCTGTTCCT

a score=36750
s chr3           104674251 1807 + 160039680 AAATCttttttccagtagtgaggcctgaaccctgtcgccagggcctcttaagcaaatgct---gtcactgagctgtgtacccttagctccCTGACCTGAAATCTCCACCCCTTCACGCCTGACATTCAT-GACTGCTTCCCGGTGACCTTGTGT-CCTGGATCCCTGCTTCTTATAGTCCTTCTTTCCCCTAGAGGCAGGCT-----CAGAAAGCTGTTTTCCTCTTACTCTTGTCTC-GGGTCATTT-----GGCTGAGGAATT--------------------------GCAGCTGCC----------TGGGCGGGGCTGGATGGTAGAGGTGTCTGGATCCGCAGAGAGGAAGCGACTG-----GAGTTCTCAAGAGTCCTGGGTTCACACTGACCCTTCCTGGTGTTCCCTGGCCCATTGCAGTCCTCCTGGGCATTGCCTAG-GCTCCCCGTGTTTCT--------------------------GCTTGCT-----------TACAC--------CCAGTCCTCAGGATGTCCTCTTCCCTTGCT--------------AGAGCCTCAGCCTAC-GAGCCCGAAGCTCACATCCTGGGGGTTAATTTCTACCAACTCTAATGCCTTCAAATCCCAGGCTGAGCCTTCAGGCCAGGGTACAGCCTGCAGAGCTGACTCATGTGAAGTAGCTATTGGGTGACAAAGGTGAGAGTGGGCAGAAGCCTCCAGCTGCCCCTCCCATCCCTCCCCCCCCCCCCCAATCTGGGCTCCAAGCCACTGTCCCACGCAGCTTTCAGGGGGAAA-TGTCCTGATCTAAACTAAGACCAGTGCTATTTCCTGGGTCACAAGATCTCCACTGTGCCCCCTGGACAAATCTCGGTGACACCGGGTGCTTGAGCTGCATGGCTGGACAGGCTCCAGGCTTTGATG-------------CAGCTTCTGCTTGA-GGCGTTTACC-CCAGCA-GCTTGGCCAAGCTAAAGCAACCATTCATCCTGACTGTT---------TCCAAATGGGGGACTTCCTCTGATGGGAAGATCGTCTGATTCTAATGGGGTCTACATCTTGCCTTAAGTGCTGCTCCTAGAAGACACTAGCGCCAGCCCCCTGGGAGTAGAAAC-TGTCTACT---CCCTCCCAC-CTACACCTCTGGAGAAATCCACGCACCCACCCTCACACCCCAGTACTGC----GGTCATTCCTAACACAACACAC-----CCCAGTGACCGCAAACATCCTCCCTCCTACACACAGCTGGACCTGATCTACAGAGGCGTTAATTCCTCAGGACCTGAACAGCGG--CTGTTCCAAGTCCAGGGAGACCTCAC---GCCGACCTTCAAGGAAC---AAGAGAGGGGCCCGTCGCTGGACACCCAGGATGGTCTCCGCCCACCCTCTTTCCCATCAAAGCCTTTTCTCCGACATAGCTCCGTAGAGACAGTTCAGGCCCTTACGTGGCAGTGTGCGGCGCCCTCGTGTGGCCCATAGCCACCCAGCACGCTGGCCCCCTGGACCTTAG-CTTTACCTCGGCTCCCCTGGCACACCTAGGTGTCCCCTCCCC-----------CATCCGCTCCCCCCAGCTGTCCCCACCGGATGTCAGAACTCCACCTATTCCTGTACGGTGGCTTCCTGTCGGTCAGACCAGGTTAACCTGCTCTTTCCAT-TAAT----AGGAGGCTTTGAGAGTCTGGAGCAGGAATCCTGCCACGCTTAGCAGATGCCCTGCTGAAGTGAATTTCCTCATGTGTCTGTCTCCCTGCCCACTCTGAAAGGGCTTCGTCTAGGAAGTGAAAGAAAGGAAAACAAAAACAAAATTACAAAACCAGAGTAAGTTCGCAAGAAAACCAGAGTCACCCATCATCAACTGGGCTTTGACAATTTATCCACCGGAGGGAATGCGAGCTGACTTTCAAGCGT----TAAGATTTATGGGAGGCTATTGGTACTGGGC
s HiC_scaffold_1 115140253 1910 - 233722169 aaatttttttttttgtaccagggatcgaactcatgaccttgtgtttaccaAGCAAGCatttaaaccactgagctaaatccccgg----ccttgaGATGAAATTTTGACCAACCCAGGTCTACTACCAACCGATGTCTTCTCAATGACTATGTGTTCCCAGAGCCTTG-TTCTTGGGATCTCCTGCTCCCTGAGGGGCCTGCTGCTCCTTGGAGGATGTTTTCCTCTCACGCATCTCTCAGGGTTGCTGAACAGGGCCCAGGAATAAGGTGTTGGGAAGGATGAGGTtcagagcagaggccaggctgtGGAGGGGCGGGCATGG--GGCAAGGAACTCTGAACTGGGAGAGAGAGA-TGACCACATGTGGGCCAGGTGGAGTCCTCAGCTCCCACAGATTTGCCTTG-----TCCTCACCCAGATGAGTC-TCATGGGCACCGCACAGTGCTGCCCCTCTTCCTTTGTTTCAGGATCCCAAGATCCCTGGGCTTGCTATTTTCCCTCCTAAACGGGCTCTACAAAGCCTCAggacttcctcttcctctgctctgGGACCCTGTCCAGAGCCTCAGGCTACTGATTTTAAGGCTCCTATGCTGGGT-TTAATTTCTACCCACGTTAAAACCCTCAAATCTCCGGCTGAGAAACCAGGCCAGGGTACAGCCTGCAGAGCTTATTCACGTGAAGTAGCTATCTGGTGACCATGGTGGGAGCAGGCAGACTCCTCCGG--GCCTGTGGCAGCTGCCCCTTCCACCAGCGATCTGGGCTCCCTGCCACTGCCCCACACACCTCTCTGGGAAAAAGCGTTCTGGTCCAAAGTAAGACTGGCACTATTTCTTGTGTCACAAGACTTCTACTATG-CCCCTAGGCAAATCTTGGTGACACCAGGTCCTTGATCGGCAGGACAGGGCAGGCCCCAGGGCTTGGTGCTGTAGGGGCTCCCAGCCTCTGCTGGGTGATGCATACCATTAGCAGGCTGGAGGAAGGTGGTCCTGTTGTTCCCTCTCACTCTTCGGTGCTTGTCCACCCTCCTGACTACCTCAGATGGGAACCCTACCCCTGTCCACTGGAG-ATGGATCTtgtttctggttctctgtcttgTTAGcaccagtcccagcactctgggaccaCGAACATGTATACTGCCCCCTCCCACACCATATCCTAAGGGAAGTCCACAC-TCTACACTGCCACCCTTGGATTATATAAAGTCACTCAT--CGCAGCACACAAGGGTCAATCAGCAGCAAACGTCTTTCCTTCTCTCTACAGACAACCCCATCTTACACATGCATGGATTCTTCCAGGCCTGAAAGTTAGCTCTGTCCAGAGGCCAGAGGAACCTCACAATGCTCTCCTTCAAGAAACCTGGGGAGAGGTGCCTGTCTGTGGGCA-CAAGGACTGTTTCTTTACACACTCCCTCCCCAGAAGGCCCCTCAGTCTTCATGCATCT---GGGTCACCCTCCACCCAGATGTGGCAGTTTAGGGCGCCCTCGTGTGGGCTACAGTTGTCTCGCAGCCTGGCTGCCCGGATCCCAGTCCCTACTCCTAACCCTACCGCACCCTCAGCTCTCTTCCCCTTTTACACCTAGGCATCCCTTCTCCCCAGCTG-CCCCAAAGGAAGTCAGGGCCACTCCCATTACTTCCCATTGGCCTCCC-TCAGTAAAATGAGGATCCCAGGCTTTGTTTATGCGATCTTAAGGATTCCTTGAGAACCATAATGAAGAATCCTGTTGCAGTTAGCAGATG-ATTACTATACtgaatttcctt-tcttcctgtctcccGTCCCATTTTGAAGCTGCTGCTTTTAGgaagtggaaaatgaaaaaacaaaa---------------------aagctcacAAGCAAATCAAACTTACAGAT--------------------------------AGAGAATGTAGACTAATTTCCatatactaaataaaatttatcGGAAGTCATTGGT-CTGGAC

a score=4521
s chr3           104685738 70 + 160039680 ACCCAAGTTTATTTTCAGGTAAGGAATGTAAAAACAAATTTACAAATATATGTAAAACTAGAAGAACTGA
s HiC_scaffold_1 115169617 70 - 233722169 ACTCAAGGTTATTTTCCAATGAGAAATGTCAAGATGAATTTACAAATGTGTGTAAAACTAAAAGAACTGA

a score=21815
s chr3           104692152 788 + 160039680 TTGTGCATTTTCCTTTGCCTACTAGGACCTCCGCCGTGAGCCTCAGCTGAATAGGG-AAAGCTACT-TCCCCTCCTTA------------CCCTCAGATAGTTACACATCAGGACCACAACTCCTCAGACATGATGTGTAGTCATGACAATCACCTCGATATGGACAGACTG--AGGTTTGCCTT-CCAAACCTCCAGCTGTCCAGCATTGGCCGTGATGAATCTATTGCTTCATAATTTGAGTTCTGTTC--AGCC---CAAATCTCC--------------TATGCAGTCTCAGATACCTGGGAACATCTTTGATGTC-----ACAGGGACAAGGGAAGATAGTCTATGTTGTCCCAGT-CAGCTCC----------ATGACCTCCGGAACCCTGCTTGAGTCCAGTGCCAACTTTGAGTGGAGACTTAGGAATCTAAGACCCTGAGAGAGGCCTCTGGCTACTCTCTATCTCATATTCCTATATAGCATAGCTCTTATCCTTCTGTGAGGAGAGGATCGTTTTTTTGCACTTTTT-CCTGGAACAATTATTTTGTGCTGTACATCTGACCTGTATAAAAATAGAAGGAGAAATCTGAGCTCACCGCTAAATTGGACTAAAGCCCTGGTGGCGATTTAGACTGAAATGCCTTTATAGCTCTGAATATTTCATGATAGTTGAGTTTAGAGCAGAATAACCAGCATTATTTATTAATGACTGGTCGGTCACCCATCATAGGTATTAATATA-TTTGCTGCATAGTGTCAGCC-AGGGGATGTTAGCTTCAAGGGTCACATCTAA------TGTGGCAAAATGTAGTGATCTCACTCACTCAGGCTTTTG
s HiC_scaffold_1 115171286 785 - 233722169 ttgtttttatttcttttgttataggGGCCTCAGCCAGGAACTCCAACTGAGTAGGGTAAAGATATTGTCTCTTCCCTATACAGAGCTCACCCTTTAGATGCTTCC----CATACTCACAGCTCCTCAGATATGACTTATTGGCAGGTCAGTGATTTCTACATGGACAGGCTATCAGTCTAGTTTTTCCAAACCACCAAGTGTCAATGTTT--CCTTGCAGTGCCTAGTGCTTGGTAATTTTAATTCCATTCCCAGTCATACAGATCCCTGTCTCATGTCCCCATATGCAGTCTAAGAAGACTGGAAGCATTTTAAATGCTTATAAATAAGAACTGGGAAAGGCATCCTATAATGCTCCAACATTGCTTCCTATCACTGAATAAACCCCCAGTCCTTTAAGGTAGCCAG-GCTAGGCTTACGACAGGACTCAAGAACCCTGGACTCCAAGAGAGGGCTCTGGCTTCTC----------ATTCCCAG-----------------TTTCTGT------AGGTGTGTCATTTGGTGCTTTTTTCCTGAAACTGTTATTTTGTGCTTCGCATCTGACCTGTGCAAAAATATGATGA--AATCTGAGCTAACCACTGAATAGGACTAAAGCCCTGATGAC----TAAACTGAACTGCCTTTATAGCTCTGAATATTTCATGACAG-------TAGAGTGGAACAGCCAGCATAATTTATTAATGGCT----GGTTACCCATTGTAGGTATTAATACATTTTGCTACACAGTTTCAGCCAAAGGGATATTATCTTCCAGGGACAAGTCCAACTCCAGTAAGGCAAAGTGT-------TACTTCActcaggcttttg

a score=14126
s chr3           104692213 681 + 160039680 TACTTCCCCTCCTTACCCTCAGATAGTTACACATCAGGACCACAACTCCTCAGACATGATGTGTAGTCATGACAATCACCTCGATATGGACAG-ACTGAGGTTTGCCTTCCAAACCTCCAGCTGTCCAGCATTGGCCGTGATGAATCTATTGCTTCATAATTTGAGTTCTGTTCAGCCCAAATCTCCTATGCAGTC---TCAGATACCTGGGA-ACATCTTTGATGTCACAGGGACAAGGGAAGATAGTCTATGTTGTCCCAGTC---AGCTCCATGACCTCCGGAACCCTG----CTTGAGT----CCAGTGCCA-ACTTTGAGTGGAGACTTAG-GAATCTAAGACCCTGAGAGAGGCCTCTGGCTA--CTCTCTATCTCATATTCCTATATAGCATAGCTCTTATCCTTCTGTGAGGAGAGGATC-GTTTTTTTGCACTTTTTCCTGGAACAATTATTTTGTGCTGTACATCTGACCTGTATAAAAATAGAAGGAG--AAATCTGAGCTCACCGCTAAATTGGACTAAAGCCCTGGTGGCGATTTAGACTGAAATGCCTTTATAGCTCTGAATATTTCATGATAGTTGAGTTTAGAGCAGAATAACCAGCATTATTTATTAATGACTGGTCGGTCACCCATCATAGGTATTAATATA-TTTGCTGCATAGTGTCAGCC-AGGGGATGTTAGCTTCAAGGGTCA
s HiC_scaffold_1 115253870 651 - 233722169 TATTTCCCAGGCTTACCACC-------TGCCAATCAGGACCACAGCGC---AGACATGATTTACAGACTTGTTACT-GTCTCTCTATTGACAGGACCGACATCTGAGCTC--AGTCTTCA-CAGATCAGC--TtgctgtgaaagacctgaggttTGGTAATTTCAGTCCGGCTC---CCAATT----TATACACTCACTTTAGGTGCTTACGATCCAGCTCTG---------------GGAAAAATATCGTATTATGGCCTGATCTGGAATCCCATGAGCAGATGAGCCCTGAGTTCTTCAGGTCAACCAGTGCCATACTTAGGGCAGGGTCCAAAAGAATCCTTGACCCCGAGAAGG--TTCTGGCCATGCCCTTTGACATATGTTCCTACACGGTATAGCTTTCTACCTTCTGCT----TAGGCTCAGCTGCCTGGTCCCTCTTCCTGGAACTTTCAGTCTGCACTCTACATctgctatgt-taaaaaaaaaagtaatagaacCTAAGCTCACCACCAATTTGGACAAAAGCTCTGATGACTATTTAAATCAAGATGCATTAATCCCTCTGAATATTTCATATCAGGCATATT------AGAACAAGCAACATTATTTATTGAAGGCT----GATCACCTCTCATGGGTATTAATACATTTTGCTGCCAAGTGTTAGCCAAAGGGAAATTAAATTCAAGGGACA

a score=5140
s chr3           104708442 254 + 160039680 ctggccatttctttgtCCCCACACTCTCAGTTACC-TGAGCAGGAAGGGTA-ACAGTCATGAAGGAGCCCCCAATACATG--ACTGAAAGAGACTTTCTAAGCACCTAGCACCCCAAGCCACTTTCAGCACAAATC-----CTTGACATAACCAACCTAATATCAATACCCTCAGGGCACAAAGCCCGGAT-TACAGCTGCACGCATTCCTCAGGGCCTAAAAGTCAGGTGTTTCCAGGGGCCAGAGGGACCCCACAGTAACTT
s HiC_scaffold_1 115246114 220 - 233722169 ctGGCAATTTCTCTG--CCCTTGCTCTCACCTCCTGTGGGCAGGAAGGGTCTACAGCC----------TCCCAACATGTGCAACTGG---------------------GTACCCTCAGC--------ACACAAATCACACCCTATACTCAAGCA--CCAGTACAAACTACCTCCAGACAGACAGCCTTGCTCTACAGATGCAGG-ATTCCTCAGGGCCGGAAAGGCAGCTGTCTACCGTGGCCAGAGGGACCTCACAGTGACTT

a score=4815
s chr3           104708614 101 + 160039680 AAGCCCGGATTACAGCTGCACGCATTCCTCAGGGCCTAAAAGTCAGGTGTTTCCAGGGGCCAGAGGGACCCCACAGTAACTTTCCTTTGAGAAACCTAAAG
s HiC_scaffold_1 115141513 100 - 233722169 AACCCCATCTTACACATGCATGGATTCTTCCAGGCCTGAAAGTTAGCTCTGTCCAGAGGCCAGAGGAACCTCACAAT-GCTCTCCTTCAAGAAACCTGGGG

a score=8778
s chr3           104712199 250 + 160039680 ACCTTTGTTTTCTTACCATGTTCCTGCTCCCCT--------CTCTTTGGAAAAATGGAAAGAAACAAACT---GAGCATATTTTAAAT-TCTGATCTCCATCATTCTTAGCAGAGCATTAATTAATTGCTTATCCATGGTAATGAAGAGCTAATTACCT---------AGTGTAGAAAGAAGAAAGGAAACATGAGTATGAATTTTCATCTGGGCTCCCGTGTGACGGAAATGAGAATGAGCTGCTTGTGCTTGGAGCTGACCATCAGTGA
s HiC_scaffold_1 115248637 265 - 233722169 ATCTTTCTTTCCCCAT----TTCCTCCTCCACTGGGGCCAGatcttttggaaaatgaaaagaagcaaaCTTCCAAGTGAACTGCAGGCCTCTGATCTCCATGATCATTAACGGAGCATTAATTAATTGCTTACCCACAGAAAGGAAAAGTTAATTAGTTaccatgaaaaattttaaaaggaaaaaggagacatgagtttaaattttaattagtgGCCCTGCATGATGGGAATAGGAATGAACTGGTTTT--TCAGATGTGATTGTTGGTGA

a score=28408
s chr3           104720142 1627 + 160039680 AAGAAGCAGTGAGGGACAG-TCTCCCGGGAGTcagtc--ttctcgtctccctgtattagtagaaccaaacaggctgccaactagtgacacagaaatgtgtctgtacaagttcccaccccatcatcgccgtcctggtggagaaggatggg-----------AAACATTAGTTGAACAAAAAACCCATGTACTGAGGTATCTGAATAGTGTCTAGAGCTAGCCTGAGTTCTGGGGCTTTCTCCCATACT--CCTCCTGGGCTTTGGATTGCTAAGGGGCTGCATACGGCCAACCTCATGGGATGCAGGCAGGCAATGCAGAGAACTTCGCAGGTGGGGAAGCAGAGCAAGTCATCAGGTCCCAGATTGAAATGGAGCTGGTGCAAAATGCCAGGGAAAGATGCTTCCAGGGCAGGCACAGAAGGAAGATGCTCCCAGGGCGGGC-------ACAGAAGGATCTCAGTGGACCTGAGGATGATGAGAGGGAGGGAGGTCAACACTCCCCATGGGGAAGACAGGAAGGAA----------------CTGGGACTCCACAG---AGCTCAGAGGGCTAGCTCTC---------TTTCAAGC--CAATTGTTCTCAGTCACTGGCTGAGTTAAGAAGGAGACAGGGAGGGTTTTGTGGAATTAAA--------------------------------TAAGCTGCCCT-----------------------TGCCTTTGCTTTCAAGCCCCCTCAGGTTAGGTCTT-AATGGA--------------------GGGTGGGAGACAAGACTCCATTAGGTGGAGTGCTGGCT---GGGAATAGGGAAGCA-AGACAGC----------GCCTCATACCAGTGATCACTTGTTAACACTATAGCCTAAAAGCCATCATAAGATCACAAGGGCCATGGCCAGCAGGTCTGAGGTAGTGGGCTTAGTGTTGCCAACTTCGCCAGCTTGCTCTTCAGACTCTCCTCACGCTCACTGTCTGCCAGTCAAGACCACAGCTTCCAAGCATGACTTACAGACTATTAGTTATTTCTCTACCAGCAAGCT----GTCTGAGCTGGGCCTTCTTC------CCTGCACTGAGAGAAGTTCCTGGCAGAGTCACACTTTGCTTAGTGAATTGAATATTATTCTCAGTCTCTATGGTCTTGACCCCCTTTGCGTGGCTCCAAACACTTTCAATGCTTACAGTCAGGGAAGGGCCGGGAAAGATGTCCTATTGTATTCCAATCCGTGTTTCCCTGA-CAAGTCTGCAC-GAGTCGTTCAAGGTGGTCAGT---ATATCGGGAGCAGGGCTCAGGAG--TCCGTGACTCCAAGCCGGGACTCTGGCCACTCAACTTATCATTTATCCCTGCCTGGCATAGCTG-----CACCTGTAGGGAGCTGATTGCCTGATCTCTCTTCCTGGAACCCTCGGCCTGCACTCTACATCTGATATATACAAAGGAACAAAGATAACAGAACCAAAGCTCACCACAGATTTGGACAAAGGCTGTGTTGATAGCTTAAGGCAAAATGCATTAACGTCTCTGAATATTTCATGCCAGGTACATTAGAGC-AGTAGCATGATTTATTCAAAGCTGATCACCCATACTGAGTATTA----------------------AGTCAGTGGGAAATTGGCTTCAAGGGGGTAATATGGGGAGTTTTGGGCTCCTCGGTACTTTTCTTAAGGAATTATAAATATGTCATG--TGGGTGGAAGATGTGGTCTGATGTTATTATCCTATCTCACTTTGACCTCT-TTAAAACTTTTGAGA
s HiC_scaffold_1 115252962 1683 - 233722169 aacaagaaaagaggatCACCTCTCCCGACCTTCAGTCCCTCTCTGGCCAACTCTACTATCAGAACCTAAAATGGTGCCAACTACCAAAGCAGAAATGTGGCTTT-CAAGTTCTCACTTCAGCATTAGGAGGTCAATATTAAAGGATGGGTTTAAAATCCAGAGCCACAGTTGAATAACCAGAGCATAAATTTAGCTGTCTCCATACTGCCTAATGCCAGGCTGAGTGCTGCGCCTTTTCCCCATGCTTACCTTCTGGTCTCTG-------------------AGAGCCCACTTTAGGAGAAACTGCCA-------------------TAGCAGGGAAAGCAGATCAGTCTGTTAG--CTCGGACTAAGCTGAAGCTGCTACCAGCTGGCAGTAAGAGA----------AAAGCCATAG---TAAAGTGCTT---GGGCGATCTGAGCTGATGGAAGGAT------GG----GAGGAAAGTCAGAGGGAGGGATGTCGGCATTCC---TgttgaagaggaggaggaaatctTTAGGCTTTCAGCTGGAAC-CCACAGTAGAGCTGAAGGACCTAATTCTCCCACCTGAATTTCCTGTTTCGTTCATCTCTGGTCA--GACAGAGAGGGGAAGGACACACAGAGGCCTTGGCAGAAATAAACACCTTGGTCTTCCTTTTTTAAGGGTGGGACATAGGCAACCCCAAGCAGACCCTGAATCCTAGACCTGCTCTTCCTTTCAAACTCCCTTAGGTGAGGTTTTTAATGGATTTTGTCTTTCAATACCGCAGGGTGGGACACATCACAGATCTGGGAAGGGTGTGGGCCCCAGGGAGCAGAGGATTGGAGGCAGTCTGTCAGGAGGACTCACACCAAACTTCTCCT-CTAATTCAGagccacaaaaatgaaaacagga----aggGGTGGTAGGGAGTACTCTTGCTCCACTGGGTGCAG-ATTCCCACTCCTGCCAGCTCACCCTCGGGATATTTCCCAGGCTTACCACCTGCCAATCAGGACCACAGCG--CAGACATGATTTACAGACTTGTTACTGTCTCTCTATTGACAGGACCGACATCTGAGCTCAGTCTTCACAGATCAGCTtgctgtgaaaga----cctga-------------ggttTGGTAATTTCAGTCCGGCTCCCAATTTATA--------------------------CACTCACTTTAGGTGCTTACGATCC----AGCTCTGGGAAAAATATCGTATTATGGCCTGATCTGGAATCCCATGAGCAGATGAGCCCTGAGTTCTTCAGGTCAACCAGTGCCATACTTAGGGCAGGGTCCAAAAGAATCCTTGACCCCGAG--AAGGTTCTGGCCATGCCCTTTGACATATGTTCCTACACGGTATAGCTTTCTACCTTCTGCTTAGGCTCAGCTGCCTGGTCCCTCTTCCTGGAACTTTCAGTCTGCACTCTACATctgctatgttaaaa---aaaaaagtaatagaacCTAAGCTCACCACCAATTTGGACAAAAGCTCTGATGACTATTTAAATCAAGATGCATTAATCCCTCTGAATATTTCATATCAGGCATATTAGAACAAGCAACATTATTTATTGAAGGCTGATCACCTCTCATGGGTATTAATACATTTTGCTGCCAAGTGTTAGCCAAAGGGAAATTAAATTCAA-GGGACAAGGTGGAAGGTTTTGGCTTCCTAGAT-CCCCGCTGCCCGGCCAGGAAATAAATCTTGCCTAAATGGAAGACGTAGCCCAGTGCTGTTATCCAATCTCACTTTGGCTTCTAACAAAACTTCTGAAA

a score=14745
s chr3           104732506 630 + 160039680 AGGCCTGGAGTGAGGTTGCAG--GGAAGACCCACATGTCTGTGTGCCCCTTTAAACTACAGAACCACACCTCTCTCCAG------------CCTGTTGTGTTTCC---------------TTCTTATCCTAAGATCCTGTCTGTCAAGACGCATGAAGCATCTACAGACTATTTCGAAAGTTTACATAAGCCTGATTATCCCCACAGGGAACTGATT--------GTTCTTCCTCCAAGATGAGAATCAAGTAGATTGAATGAATTTATCATC---AGTTGTCATGGCTGGGGAT--GAGGAACAGAGAATAGAAAG----------CATCTCCTTAATCTCTTCCCATCCCACCCTGGAAGTTTGAGATCTTCAAGGGAGAGAGCCTGAAACTGCACCCGCCACCATTCAGCAGTCCACATCCTACGGGACACGCTTTCTCCTGTCACTGACTGTAGTGTG-TGGGGACATCCTTTTTGTAGATGATAAACAGCCCTTCACTACCTCCACAGCTTGG-----CTTCCTGGGAGGTTCTGGTTCACCGCAGAGTAATAATAAAACCTATAATTGGTGCTGGGATGAAAGTGGCTTTTTCCCTTCCTGAGATCTAGGCATGAATTTAGTGTGAGCTGACCAGTAATTGG--TCAGCCTAAGGCCGTGT-GCCCCCAGCATTACCCAACTTAA
s HiC_scaffold_1 115264351 658 - 233722169 AGGCCTGGAGTCAGGGTCCAGAGGGAAGAGCA----GGCTGTACATCTTTTTGGACCCTGAAATCACTCCCAACACCAGGCACACATCTCCCCTGCTATCTCCCTGATCAGTGCTCAGGGCTCTTA----AAGACTGTGTCTGTCAAGATAGCTGTAGCCTTTGCAGACTATTGCAAAAGTTTACTCCAATCTGATTACTGCCTCAGAGAACCAAATTACAGTCAAATCTTCCAGCAAGATTAGTAT-AAGTAAATTTACTGAATTTACTGCTGGGAGTCATGATGGCTGGGAATAGGGGGAAAGAACAATAAACAGAGACCTCTGTCCCTTTCTTtggcttttctt-tccccttctgaaACTCCTAGATGTTTAAGGGAGAGTCCCTGAAG----------------TCAGCTGTGC-CATGCATTGG--CAGAGTTTCGGCTGTTACTCCCGGTGTTCTGCCCAGGGCTTCCCTCCTGCTGATGGTAAACAG-CCTTCATTGCCTGAGCAGTTTTGTCTTACTTCCCTGACAGTTTTTGTCTACTG-GGAATAATAATTAAACCAAAAACTGGAGCTGAGACAAAAGTGA--TTTTTCCTCCTTGAAGTCTAGGCATGGGTTGGGTGTGATGTGACTAGTAATTAGATGCAGCCTAAGGAGGTTTAGCCTCCTTTGTTACTCAATTcaa

a score=5752
s chr3           104733141 129 + 160039680 ATCTAAATGTAATCAAGATCAAAGCCTAAAGCCCTTTCCCCCTCAGAGTCAACCTGCTTGATCTCCTCTTTGGTATTTGATTTCTAAGCCTCTCTTTAACATGCCAGGAAAT--GGAGTTGTCATTAGCCC
s HiC_scaffold_1 115265467 130 - 233722169 ACttaaatttaactaaaatcaCAATCTAAAGCTTTTTCCCCTT-GCAGCCAACCTGCTCAGCTTTCTCTGTGGTTTTTAACTCCTAAATCTTCCTTTAATGTGCTGTGAGATAAGAAGTTGTCATTAGTTC

a score=20751
s chr3           104743122 1167 + 160039680 AATTCAGCTTTTCTCAGAAGGAGAGCATGCATCTCTGGGGACCTTGGGTGTATAGCTCCCTTCCTGGTTCTCATCTGACTCATCTGTGCTTGGAAATTAGAAGATTGTTGG--ATTAAAAAGAAGC---TACAAACAGACTGCAGCTGATCTGAAGGTTGTTCACTGAAATTTCCCTACTAGCTGTGGGCTTTGGGGGCTGGGCAGAAAGGTTGCCAACAGTTCTGATGAAATTCAAACAGCTGTGGGCAGTGGCTTTAACTGGGCATGCTGAAGGGACTCAGTAATCCATCATTTCATCAGGCTGAGCCAGATGTTGG---GGTGGGGGGTGGAGGCTTTGCTAGGAGGGTGGAATGACGGGAGATTAGCAGCCTCTTTTCCAGGGGTGGGAAGCATAAATGTCCATGCACTGTGCAAAGAATCTATACCCCAGCAGGGGTGATGACTATAGTTATCCCCTATCCGAATATCCAATCCCTTCATTTGGGACCACACTACCCTGCTTACTCA---------CGAGCTGAACATGTCCTGAGCACAGGCCAGGAACCAGATGTTGTTCTGTGTGCCAAGAAACGAAGTCAGTGAGACACAGTGTTTGGAATCCTGGGTCTTCAGGTACAGGAAGAGTAAGACAGACAGGTTGACTAAGAACTGA-ATCTCCCCTGAAAGGCTGTGTTATT--------------------------CAGGTTCTAATCTCGGATGTCTGTAAAGACAGGACGGTAGAAAGGTGAGCCCTGAGAGTTGCCTAGGGTTTGCTAAGTGA--AGAAGAGGAGGCTGCCCCAACTGCAGTTACAGTGACACCATCATTCTTACAGGATATGTGAGCACAGCAGATTTAGTTACGAGACTTTGTTGAAgtattctttcatttactgcctgccatagtcctatggagcaaaatttc--------------ctttacaaatgaggaactatgggacccagggtagttaaaccacttccccaagAGTAGCTTGGGGAAACTCAGGTAGGGAGTCAGTAGGACTGGAGTTTAGAGGTAGGGGTGGGCATGAAATCATGAGGACAGAAAGACAGATAGGCAGAGACCTGAGAGGCATGAACATTTTTTTTTTTTTGAGCAGTGTGATGTTGGTATC---ATGGC---ACA----AAGAGCAGCCTGGTTGACTTCTGCTTTTGAAG---ACTTTGACAGTGATGTAGAAGTGGACTGGAggg
s HiC_scaffold_1 115273146 1086 - 233722169 aaattaatttattccAAAAACAAACCATGCATCCTTGGGCTCC---------------CCTTTACAGCTCCCATCTGCTTCCTCCATGCCTGGAAATGGGgagatagaggggaatgaaaaagACCTGTGTATAGGCAGGCTGCTGTTGACCTGAATGTTGCTTA-TGAAATTTCCCCTCAAAATGTGG-CTATAGGGGCTGAGAAGGAAAGCTGCCAAGA-CACTGATGAAATTCCAACAGCTGTGAGAAGTGGCTTTAAGTTGACAGGCTGTCTGGAGTCAGTAATCCCACATTT-ATCAAGCAGAGCCAGATGTTGGCCCTGTGGAAGGCAGGGGGTAAGCTGAGGAGCAGCAACGA-----------------------CAGGGGTTAGAAGCA------------------GCAGGAAA-----GGCCCAGCCAGGGTAACA---------ATCTGCTGTACAGAAAGCCAAAGCCCTTA--GAGAAGCTCCGTCACttgctcattcattcatccaccTGACCAAACATTTACTAAGCACCAATCAGGAATCAGAGGCTGTACCCT---TCTGAAAAAGATGTCAATGAG--ATAGTGTTTGAAATCCAGGAATTCACAGCATAGGAGG----AGACAGACAGGTGGGCTAATGAGAGAGATCTCTGCTGAAA-GTTGTGCATTTCCCAGTGGGACATGCAGAGGCAGTGGCCGGTTCTGATTTGGAATGTCTA-ATAAATTTGATGCTAAGTGTGTGAATCTTGAAAGATAAATCGTTTTTGCGAGGTAAGCAGAAAGGAAAGGCATCCCAATCTCAATAACAACGATACa--catatttgttgaatatatG-----AACAGATGCAGTTCTAAGA-TTTACACACATACTCTTTCGTTTAAAGCTTGCGGTGGTCCTATGG-GCTAGGTTTTATTGTTAGCCTCCATTTTACATAAAAAGAA-TCTGGGATTCAGGACTGTTGAGAAACTTGCCCAAGGCCATACTGGGG-AGCTGGGGT---GATTTATTGAGATT-GAGTTCAGAGGTGGGGTTGTCCCTGAAA----------------------------------AGGTGGCATGG-------------CTTCAACAGCTT--TGCTGGCATCCATCTGGCTGGACAGGAGAAGACCAGAC---CTGATTTTTGCTTCCCAAGATCACTTTGGTAGTGCTGTAGAGGTGGAAttgaagg

a score=23896
s chr3           104752725 440 + 160039680 CTTAAGCTCTCTCCCCCCGTATCCGGCGAGCCAACTGGATGTCTTTGGGCATGATGGTGACTCTCTTGGTGTGGATGGCACACAGATTGGTATCTTCAAACAACCCCACCAGGTATGCTTCGCTAGCCTCCTGAAGGGCACCGATGGCTGCACTTTGAAACCTCAAGTCGGTTTTGAAATCCTGGGCGATCTCCCTCACCAATCTCTGGAATGGCAGCTTCCAGATGAGCAGCTCAGTCAATTTCTGGTAACGACGGATCTCTCTCAGAGCCACGGTTCCTGGCCTGTAGCGGTGAGGCTTCTTCACACCGCCGGTAGAGGGCGCGCTTTTTCCGAGCCGCCTTGGTGGCCAGCTGTTTGCgggggggcggggggggaagggggggagggggggCTCTCCCACCGGTGGACTTCCTAGCGGTCTGCTTGGTTCGGGCCAT
s HiC_scaffold_1 141492284 412 - 233722169 CTTAGGCGCGCTCCCCGCGGATGCGGCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAAGCCCACCAGGTAGGCCTCGCTGGCCTCCTGCAGCGCCATCACGGCCGAGCTCTGGAAGCGCAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGCACCAGACGCTGGAAAGGCAGCTTGCGGATCAGCAGCTCGGTGGACTTCTGGTAGCGCCGGATCTCGCGCAGCGCCACGGTGCCCGGCCGGTAGCGGTGCGGCTTCTTCACGCCGCCCGTGGCCGGCGCGCTCTTG-CGGGCCGCCTTGGTGGCCAGCTGCTTCC---------------------------GCGGGGCCTTGCCGCCGGTCGACTTGCGGGCGGTCTGCTTCGTTCGGGCCAT

a score=10245
s chr3           104755138 453 + 160039680 TTTTCTACAGGTGGTGTTGTGAGATCAAAGAGTTCCCCCGCCTTTGTCTTCCTTGCCAGAGGCAGACAGGAGAGGCAGACAGAGATTTCCCCAGAGAGGATCTGCCTGACCCAGGCTGTCTGCTGTGCT----ATTTACTCCAGATTCTAGCTGACAACCCATCCGAATAAGGAACTCCTC-------CTGGCCTGGGTGAGCTCCCA--CGCAGACCCAGTTGGTAATGGAACACACAGGCTTCAGCTTCCTCCATGAAGGAGTGACTGTTATGGCCATTTTCCCCCAAGCTAAAAATAACTGGAAAAAACAGGCACAA--TAAATAAAAGACCTCTTTTCAGACCCCAGGCAAATAGTCAGTGCATGATAACTGCagagggcttggctgcatctttcaatgtttgactgcagacaa-cttcaagctccaaccctcccctgtctattGTTAGAATTAATGTACAAAAT
s HiC_scaffold_1 115276108 427 - 233722169 ttttaaacaaggagtGTCAGGAGATCAACAAGTTCTCAAATCTTTGCACACCCTGCCAGAGGTAGATTGGAGA---------------CCTCAGAATGGCCCTACCTGACCAGGGCTG-CTGATCTACCCAGCAGTTACTCCAGACTCCGTACGTCAGCTGTTGAGTATAAGGTGCTCCCCAGCTTACCTGGCCTAGCTGAACACATGGCTGCACACCCAGGCTTTAATGGAGCACAGAGATTTCTGCTTCTTCCACGAAGGAGGGCTTGCTATGGCAA-CTGCCCTCATGCTAAAAATagccag-aaaaacagaaaatacttaATTAAGATAACTACCCTCAG-----AGGTtggaagacagagaagg--------agagag-----------ttTTTGATATTCAACTGCTGAAAACCTTCAAATCCCATCCCTTCCCTGTGTCCTTTTTTGACCCATTTAAACAAT

a score=6113
s chr3           104756786 154 + 160039680 TGACTGTATGTTTACAAGTGGAAAATTAGTGAAAGACATGAGGTATAGCTGGTTTTCTA-----------------------AATAGAAATGTAGGGATATAAAGCTTTAGTACAAGTCAAA-TGTTTCAGTGAACAAGTTGGAGCAGCTCAACTTTATAACGATTAGAAATTAATCT
s HiC_scaffold_1  48906614 173 - 233722169 TAATTACATGACTGTGAATGGAAAATAAGGAACCGAAATCAggta-----gtttttctatttttatttgtgtatgaatttttaatattcatgtagGAATGTAAAACATTAATGCAAGTCAAAATGTTTCAGTGAACAAGTTTCAGCAGTTCAACTTGATAACAATTACAAATAAATCT

a score=143219
s chr3           104766445 8174 + 160039680 [encoded data, 9346 characters]
s HiC_scaffold_1 115300643 8370 - 233722169 [encoded data, 9346 characters]

a score=233242
s chr3           104779162 7069 + 160039680 [encoded data, 7833 characters]
s HiC_scaffold_1 115312376 7336 - 233722169 [encoded data, 7833 characters]

a score=254972
s chr3           104788163 9432 + 160039680 [encoded data, 10763 characters]
s HiC_scaffold_1 115320924 9878 - 233722169 [encoded data, 10763 characters]

a score=9422
s chr3           104791894 163 + 160039680 CCATGGCTGCGATCCGAAAGAAGCTGGTGATTGTGGGTGACGGTGCC---------TGTGGGAAGACC--TGCCTCCTCATTGTCTTCAGCAAAGATCAGTTTCCAGAGGTCTACGTGCCTACCGTCTTTGAGAACTATATAGCCGACATCGAAGTGGATGGCAAGCAGGTGAA
s HiC_scaffold_1   2950328 174 - 233722169 CCATGGCGGCCATCCGCAAGAAGCTGGTGGTGGTGGGCGACGGCGACGGGCCGCGTCGCGGCAAGAACGGTGCCTGCTGATCGTGTTCAGCAAGGACGAGTTCCCTGAGGTGTACGTGCCCACTGTCTTCAAGAACTATGTGGCCGACATCGAGGTGGACGGCAAGCAGGTGGA

a score=9186
s chr3           104792561 470 + 160039680 CAGGTGGAGCTGGCTCTGTGGGACACAGCTGGGCAAGAAGACTACGATCGCCTGCGGCCTCTCTCCTACCCGGACACTGACGTCATCCTCATGTGTTTCTCCATTGACAGCCCTGACAGTTTGGGTAAGGCTTTGGAAGAATCTTGGGAGCATGTAGGTCCTGCAAGTCTCCTTTGCTATAGAGACAGTAGCCCTTGGGGTGAGGAGTGTTCACTGCAAAGGGCTTTGAGCTGTGCAAGGTACTGCCTGTTCAGTAGACTCCAGGGCTGCTATAGAAGACCTGGCTTCTGTTGCTAAGTAGAAGTGGGTACATCCACGTTTTGGTGATATCTCTGCAGAAAACATTCCTGAGAAGTGGACCCCAGAGGTGAAGCACTTTTGTCCCAACGTGCCCATCATCCTAGTGGGGAATAAAAAGGACCTGAGGCAAGATGAGCATACCAGGAGAGAGCTGGCCAAGATGAAACAGG
s HiC_scaffold_1   2950494 256 - 233722169 CAGGTGGAGCTGGCGCTGTGGGACACGGCGGGCCAGGAGGACTATGACCGCCTGCGGCCACTCTCCTACCCCGACACCGACGTCATCCTCATGTGCTTCTCGGTGGACAGCCCGGAC---------------------------------------------------------------------------------------------TCGCTG-------------------------------------------------------------------------------------------------------------------------GAGAACATCCCCGAGAAGTGGGTGCCCGAGGTGAAGCACTTCTGCCCCAACGTGCCCATCATCCTGGTGGCTAACAAGAAGGACCTGCGCAGCGACGAGCACGTCCGCACCGAGCTGGCGCGCATGAAGCAGG

a score=4546
s chr3           104792594 80 + 160039680 CAAGAAGACTACGATCGCCTGCGGCCTCTCTCCTACCCGGACACTGACGTCATCCTCATGTGTTTCTCCATTGACAGCCC
s HiC_scaffold_1  30502273 80 - 233722169 caggAAGACTATGATCGTCTGAGGCCTTTATCCTACCCAATGACTGATGTCTTCCTCATCTGCTTCTCCGTGGTCAATCC

a score=6541
s chr3           104793866 213 + 160039680 CAGGAGCCGGTTCGATCTGAGGAAGGCCGGGACATGGCAAACAGGATCAGTGCCTTTGGCTACCTCGAGTGCTCGGCCAAGACTAAGGAAGGGGTGCGGGAGGTATTTGAGATGGCCACTCGGGCGGGCCTACAGGTCCGGAAGAATAAGCG---------CCGGAGGGGCTGTCCCATTCTCTG---ACTTCCCCAAAGCTTCCTCAACCCTCCCACCCTTCCC
s HiC_scaffold_1   2950746 213 - 233722169 CAGGAGCCCGTGCGCACGGACGACGGCCGCGCCATGGCCGTGCGCATCCAGGCCTACGACTACCTCGAGTGCTCGGCCAAGACCAAGGAGGGCGTGCGCGAGGTCTTCGAGACGGCCACGCGCGCCGCGCTGCAG------------AAGCGCTACGGCTCCCAGAACGGCTGCATCAACTGCTGCAAAGTGCTATGAGGCCGCGCCTGCCCGCCTGCCCTGCCC

a score=105762
s chr3           104799340 3383 + 160039680 ACAGCCACTGTGACGATGTGAGATGAACTGCAGGGGAGGGGACAGTGATACCTGTAGTTGCGGAGCAGTTTGGTGATGAACTGGGGGTCATAGCCATTGGGGCCCTTCTTATACAAGGAGTTGTAGGCGAGCAGGCGCTCTAGCAGAGAGTAGCCAAGTCCATGCTTCAGGGCTAGTGGCGAGCGCAGCACAGGCCCCAGCTGCCGAGGGTCTCCTGCCAGTACCAGCTGCCCTCCGGGATTGCCCGTTTCCTTGACATCCATCAGTCCTGGGAGGCAG---------GAAGAGAAAGGTTAAATGGTGG-GATTACCAAATCAGTGTGGGGGTGCTGTACCTGTAACCCATCCTGAGCCCCCTCACCTGCTATGGCCACCAGACTCTCAGGCTCCATGCAGTGGCCAGCCTCATCGATGAAGATGTGTGTGAAGTGATCGATGGGAAACTGGGCTGACACCAACCTGGGA-GTGTCAGGCCAAGC-AGGGTCATTCCCAGGCACCCAACTACCAAACCTGAACTCTGCCCTT------------------------------------------------CAGTTCACCCTGCCCTCGGGAACCCT--------------------------------TCCTCTTTCCCTAGCCC-------------ATTAC--------------------------TCTTC---------------------CTAGCACTTAA--------------------------------------------------------------TACACAAACCCT------------ATATG-----TACCTGCTGGCAGTGATGAGGGTGGTAATTAAGACCCGATATTGCTGCAGGTGCTTCTTAGCAGGATACACATATTCTCCCTTCTTAGCATCCCAGTTACAGCAGGTCTATGGATTACGAAAGCATCAGAAATCAGCCTAGCTCTTCCCTTTCTCACGTCTCCCCTTGGCTATGAACCACTTA------TTTACCTGCctccctccttttgcagacaaggaaactgaagtccccagaggggtcctgacccacccaaagtcacacagcaa--------gtcttcaag----------------tgctctgagaacctcccagacacccgtcatcccttggctctctgtactttctTACATTACCTTAATGTCCTCAGGCACCATTCGGATGTCCCTGCTGGGGGCCAGGAGACGGTAGATGGAGCTGGGCAGGTGGACCCGGAGCCGCTGACAGAGGAGGTCAGCCCCTGAGTTGGATGGAGCACAGGCCAGGATGTGGGCTTTGGGCAAATGCTTCACTACCTGA---GAAAAAAAAGACAGACTGGGCAGACGTGCTCT---ATGACATGGGACTCAGACT-----------GCGTTTGC--CTTCCAGATGTCTGC--TAGTCCTGATGACACCTTGGTGCTGGATA-----TCAGTAAATTCTC--GTC--------------TGCATATATACACACCAATACTCATG--------------------------ACTCTAATCC-------CTACTTCCTC-TTTGGGTGACTGTTCAAGTATAGGCACATTCAGCTCGCTGGAAGCAATATAATTGCAGACATA---------TGCTGGGG--------------------------GCTGCAGCCTCACCTGTTTGATGGCCTCCACTAATGTGACAGTCTTGCCGGTACCTGGAGGCCCAAAGATGATGTAGGGGGCAGGCCGGGTGGTACCCCTCACAATGTGCTTCATGGCCTGCAGTTGCTCAGGGTTTGACTCCAGACTCCGATCGTACAGCCTGGAAGGCAAAGGGTCCAAGAATATGAACTTGAAGTCATCTAGTATCCCAAGAGGCTTCTGGGACTCCATTCCCAACATCCACACCCCAAGTAGCCCCTG-GATCCCTGCCCACAGTCTCACTTGAACTTCACATCTGAGGGCAGCAACGAGACCCCACGGGAGGCCACAGGAAAAAGCATGGGCCATAGCACCCAGCGCCCCGTCAACTCTAGGGCCCGGTGCTGGACCCGAAGGGGCTGGCGGTTGAAGGTAAAGTTCACCTTGAAGGTCAGCCCATCCACAAATCGGCTCAGGAGGCTTTGGGAAAGAATTAAGTGGGAGA-----------------GTTGTAGTTAGGTG-GAATAGGTAGTAAAAATTCAGGACCCTCTCTACCTCCCAACCATTCTGCTCCCCACCCTCTCCTTTCCCAAAAGGTCCTTACAAAGTTCTCCGAGAGAAG-AAGCCATTCACACAGCTGTGAAC----------------CCTGCAT----CCAGGGTCCTAGTCCTCTCTGAAAGCAAGACCTCCTATGCCCAGGGCTTAGAAGC--CTGAAGGTCACCTAGACGATT-TGCTTCTTCCAACACTCACCTTGTAGAAAAGCTCAGCTTGACACGGTCCAGTTCCACCTTGTGCACGAAACCCTTGTAGGTGACAGGGTCGTCCTGTTGGGTCTCAGAGGACAAAAGGGCAAAAAGGTGGTCACCTCGTAGCACTGAGGGACGGCTCTCTGCGACACCAGGAACCTGCAGGGTATGAACAAAAGCAAGCTTTTGCACGCAGTGGCCTTAGTCTCTCCCTGGCTC--TCTCTGGCCTTACAGCTCCAA----------------CTCACCCCA----GCTTTTCTCTCCTACAA--------------GGCAAAG--------------------------------------------CAAGAATCGGGGAAAGGCCGGGCAG-----TGGTGCC---AATG----TCCCCAGTCCAGCTAGCTG-CTTCTTGGCCAGTTCAGTTCCAGTTTTGCCTTTAGCACCTTGGTGAGAACTC-----------------------------------CTTCTTGTAACAACCTTTTCCTTAGCATCTTAGCTGTCTCTCTTCCTGCCTGCATTCCTGTGCATTAGGCCATTCT----AGTAAGTCTGAGTTTGTGTGTATATATTCAAAATTTGAgggttggtgagatggctcagtgggtaagaatgcctgctgttaagtttcacaacctgagttccatccctgggacctacatggtggaaagagaaaacagactcctg-ccaattgtctgttgtcctctacatgtaggttatatatgc------tgtacacacacaAAATAACT-AGATAGATAAATATGATTTTAAACACCAAAATGTGAACATCTGAAAGGCGTCTGAGAATTA-TCT---AATAAAACTGG-----------GAAAACAAGAGACTC-ATCAATGTCACACAGCTGGGGGCAAAAATCTAGATTATAAAATTCCACTACCCATAAACACAGCACTGGGGTGGTAGACACAAGAGGACTAGCCTGGGCTAGAAAGAAAACACACTGCCCTGCTCTGGCATGTTTTGGGGGGACAGGAATCTTATCCTGCCTGCTCTTTGCCCATACCTTCTGAAATAGGAATTCTTTTATGTTTGTC--AGGCTGTCCT---------GTTTACCCTGTGACCTCCTTCAAGCTGTCACGGGCCCACCTTC--CCCACAGCAGGTCTGAGTTCTAACCTCCAGGGTGAGCAGCCTGGGATTCTGGTCCACAGGGTCccaggtcatgggtaccgagtccaggtcatagtgccggatgtcatgctccatctgcagctcttccaggtgCAGCAGCAGCCGGAGTTTCACCTCATAGTTCCTGGATTTCAGGGTTGTCTCCAGCTGGGCCCTGGGAAGAATGGTT---GAGTTG--------CAGCAGGATTATGGTGAGTCAGGTAACCCTCCTGCTCTGGGG------TTCAATCATCCCCAGAT---TGAACATGCTGTGGGTGCCAAGGACTGTTCAAGAGGAACTGGTGAGTGA
s HiC_scaffold_1 115332166 3843 - 233722169 ACAGAGACTGTGAAGGT-TGTGTAGCAGCAGAAGTGAGGGTACAGAAATACCTGTAGTTGCGCAGCAACTTGGTTATGAACTGGGGGTTATAGCCAGTGGGGCCCTTCTTGTATAGCGTGTTGAAGGTGAGCAGGCGTTCCAGCAGCGAGTACCCCAGCCCATGTTTCTGTGTCAGTGGAGAACGTAGCACAGGGCCCAGCTGCCGAGGATCTCCTGCCAGCACCAGCTGCCCTCCTGGATCGCCTGTCCCCTTAACTTCTATCAGTCCTGTGAGGCAGGGGTGATGTGGAGAAAAAGG-TGGGTGGTGGAGCCTCCTACACCCTCAGGAGGGTGGTGCGCCT-CAACCCATCT--GATCCCCTCACCTGCTATGGCCACCAGGCTCTCAGGCTCCATGCAGTGGCCAGCCTCATCAATGAAGATGTGTGTGAAGTGATCGACGGGAAACTCAGCCGATACCAATCTGGGAGGTGTCAGGCCAGGCAAGAGTTACACTCAGACTCCCACCTACcaaacttggtttttttttttttttttttttttttttttttgtcttttttgagacggggtctctctatgcagttcaggctggccttgagctcactttgtagcctaggctggtctcgaactcgcaacatcctcctgcctcagcctcccaagtgctgggattacaggcgtgagccaccatgcccggcccaCCTACCAAACTTGAATACATACCAAGCTGGCCCTTGAGCTCACCTGCTAGGAGCCCTTCTTTCCCATCTTCCACCTTGTACCACCCTCCACCCCATACCTACACTAACCATCCAGAAACACGCACATGCTTCTTACCTGCTGGCGGTGATGAGGGTGGTAATTAAGACACGATATTCCTGCAGCTGCTTCTTGGCAGGAAATACATACTCCCCCTTGTTGGCATCCCAATTACAGCAAGGCTGTAGATTGTGAAGGC-------ACAAGCTTGGCTGTACCCATGC-AATGGCTC----TGGCTCTGGGCCACCAAAAATACTTTAGCCACTTCTCTCACTTTACAGACAAGGAGACTGAGACCGGGAGAAGGGCCCTGATCCATCTGAGGTCACAAAACAAGGGACCAGGTCTCCTAGTTTCCTAGCCCATGTCTACCCCAAAAGCTCCCCACACCTCCACCATCCCT------TCTGCACTTCCCTA-GGTACCTTAATGTCCTCAGGCACCATGCGGATGTCCCTGCTGGGGGCCAAGAGGCGGTAGATGGAGCTGGGCAGGTGGACACGAAGCCGCTGGCAGAGGAGGTCAGCACCCGAGTTGGAAGGAGCACAAGCCAGGATGTGGGCTTtgggcaagtgctttaccacctGACGTGCAGAGAAATACAGTGAGGG-AGGCAGCTTCTTGGCTGCTGGGGGACTCGGGCTGGGTCAGTACAGCATTTGCTGCCCACAGCTGACTGAGGCAGTTCTGGT----TCCCACTGCTGAATAATGTTGCAGTAAATACACAAGTCTATGATGACTGAAATGTAAATGGTGACTCCAAGAGTCATGCAATGTCCAACATACACTCAAAAGCCACACTGACCCTAACTTgctacttcctctttttaatGGCTGTTCAGAAGTAGGAACGTTCAGGGTCTTGGAGGGCATCAGAATGTGGGGACAGGAGCTCAGTGCTGGGGAGTCAGAGCACAAGGGCCAGATTTACACTTAGGCCTCACCTGCTTAATGGCCTCCACTAAAGTGACAGTCTTGCCAGTGCCCGGAGGCCCAAAGATGATGTAGGGGGCTGGACGGGTGGTACCTCTAACAATGTGCTTCATGGCCTGCATCTGCTCTGGGTTCGACTCCAGACTCCGGTCAAACAGCCT----GGCAGAGGGACCAGGAATCCAAACT-----TCACCTAGCATCCCAA-AAGTTTGGGGGACTCCATCCCCTACACCCACACCC--AGAAGCCCTAGAGCCCCCTGCC--CAGTCTCACTTGAGCTTCACATCTGAAGGCAGCAGAGGGATACCACGAGAGGCCACGGGAAAGAGCAGAGGCCCCAGTGGCCAGCGCCTGGTCAATTCCAGGGCTCGGTGCTGGACCCGCAGAGGCTGGCGGTTAAAGGTAAAGTTCACCTTGAAGGTCAGTCCATCCACAAAGCGGTTCAGGAGGCTTTGGACGGGGA-GAAGTGAAAAACACTCCAATCTTTCTCTGTT-CAGTTAGGTGTGTGGGGGCAATGACAAGCCAGGACCCTCTC----------CCTCTCTGGTCCAGTCCCTC----TTTCCAATACCTCTGCCCAAAGCTCTCCAAGAGAGGAAAGCTCCTCCTACAGCCCAGGGCCACTGAAAAAAAGCTTCCTGCTCTGTGCCTGGGTATCTCTTGTCTCAAGAAGAAATGCCTCCACTCCTCTGGCCTCAGAGACAGCTGAGGTCATTCTAGTAGCTCAAGGTTCCCCCAACACCTACCTTGTGGGGAAGCTCAATTTCACACAGTCCAATTCCACCTTGTGCACAAAGCCCTTGTAAGTGATGGGGTTCTCCTGGTGTGCCTCAGAGGACAAAAGGGCAAACAGGTGGTCACCCCGGAGCACTGAGGGGCGGCTCTCAGCCACACCGGGAACCTGTA-GATATGAACATATGCAGGCTCTTACCC-CAGGCTCTCTGGACCCATCAGGCCTCAGGTTCTAGCCCTCCAACTCAAGATGCAGGGAGTTAGGCCTCTCTGcattcctcttttctctcccccAAACAGGGCCACAGTCAACAAAGAGGAAAGAGGTAACTCTCCCCAAACTGCTCAGATGTGCTGAGCCCAGGAATCCAAAACACGCAAGACAGTATTTTGGGACCTGGAAGGTAGCTTCCCAGTCCATCCAGCTACCCTCTTGGCCACTTCGGTCCCTACTCTGACTTTAAAATGTTGTTCAAAACTCActtcctaaaaacaaaaaacaaaaaaaacacttcaCTTCCTGTGGC--CTCTTTCCTGAATGCCCTTGCTTTCTCCCTTCTTACCTGAACTTGTGTACAGaagtatattcttgtgagtaattTTGGACTTATGCGTACACATTCAAAATCTGAGAGCTAAAAAGCAAAAGCActcttaaaaattatct-----------------------ttttatctctGTGCTTTGC-----------AGATAAGGGACTTTGGACTGAAAGAGTGT--TTCCCTGGGTGT-GGTAACATATGCCTGTAATATgggcactctgagaggctgaggcagaaagatggcaggtttgagcccagcctgggaa-acttagcaacttagtgagacctagtctcaaaataaaaacagtagctcagcgtgaaggccttggattcaatcaaCAGCCTGGGGGTAGGGGTGGGA---CAGCACGGGCAACTTTCTTATGCAGGGCCACATAACTGGA--GGCAG---TAAGAGGCCT-----------GTATTACACCTCATTCCCC--ATCCTACAGCCTCTGGG----CAAGA---------TGCACATTCCTTGCTGA-GCCCTCTGAGACAGGAACCACTTCATCTTTTTCTAAGTTTGCCCTCCAGGCAGCAAGTATCTTGCCA-CTCTACTAGGCTGAC-TGATTTGAGCGTCATCCCACACCTGACTGAAGTCCTGACCTGCAGTGTGAGCAGCCTAGGGTTCCAGGCAGAGGGGTCCCAGATCATAGGCACGGACTCCAGGTCATAGTGCCGGATATCATGCTCCATCTGCAGCTCCTCCAGGTGAAGCAACAGCCGGAACTTCAGTTCATAGTTCTTCCACTTCAGGCTGGTATCCAGCTTGGCCCTGGCAGTGATGGTCACGGAGTGGGGTGGGCAGGGCAGGAAGAAGTTGGTTCAGGCAATCCCTATGCCTGGGAGCATCCCCTCACTCCCCTCTGAATCCCTGAA----CTGTGAGGGCCCAAGAAAG--CAGGGAAGACAGGAGAGTAA

a score=17299
s chr3           104802675 1166 + 160039680 GAACATGCTGTGGGTGCCAAGGA-CTGTTCAAGAGGAACTGGTGAG-TGAGTACAGACGGGGAGGAACCAGCAGAGAGAGGA-AGACAAGGGAGCACGCCGCACAAGGGTTGCCACTTACTTGATCTCAGCAACCTCCTTTGGGGCAGTGAAGATACTTGGTCCCTGAAGAAGGGTAGGGAGCAGTTGTCGGAGGAGGATGGGTGGGTAATAGGTCCCCAGGGCCAAACTTAGCTCTAGTTCATAGCCCTTGGCTCTGTG-AGAGGAAAGAAAGCATGTCTTAAACACAGAAACACCTCATCTTCAAAGACTCTGGAGAGGTCCCCATGGGCCTGCAGGA-----------------AACATTTCTACTGACTTCTGCAG------TGTGGTCAGCAGCCATCTAGAGATGCGGTACTCCTTAGCTTATGCAGCTAAGGTTAGACCAGCTGAGGTGATGCAGTCCAAGGTTAGACCACTCTCATTTTTGTAAAGCCTAATACTTG-GAATATTTAAAAGAAATATTTTgggctggcgagatggctcagtggttaagagcgccgactgctct----tctgaaggtcccgagttcaaatcccagcaaccacatggtggctcacaaccatccgtaacgaaatctgataccctcttctggggtgtctgaagacagctacagtgtacttacatataataaataaataaataaataaatctttaaaaaaaaaaaaaaAAAGAAATATTTTATGAGCTGGGTGTGGTGGCACAGGCCAGCACTTAGCAGTGGAGAAGAATACAAAAAAATGCAAACATAAGCAATACATGCTCTTTTGAAGAAACCCCACCAAAGCAATACATTTTAAATAAGTAACATTCTTAACATTCAGGGACAGTCAACTTTAACTTTTTGGTATATAATCTTTCAGACATTTTTTCTTTCTTTTCCTGtcttttttttttgagaaaggttattatatagcccaggctggcttcaaactcgatcagtagccagggttgaccttgcactcctgctttcgagttcctagtg-------gtgggcttgcaggcatacatccatggccttttgattgactgtggtgctaggataacctagggcctaccacataccaT-AATTTGCATAATTTGTTTATACATATATATCATT-----AAAAGGAACAT-ATGTTGTAACTATAAAGACC---TAATTACATG
s HiC_scaffold_1 115336530  913 - 233722169 GAGCATGCTCAGGGGATGAAGGAACAGAGCCAGGGAGGCTAAGGAGACCAGTACAGGCAAAGGGAA-----CAGAGAGAGGACAGGGAAGAGTGAGGGGGACA-GAGGGTTGGCACCTACTTGATCTCAGCAATCTCCTTTGGGGCAGCAAAGGTATTTGATCTCTGAAGAAGGACAGGGAGCAGCTGCCTGAGGCGGTGAGGTGGGTGGTAGGTTTCCAGTGGCATAGTTAGCTCCAGGTCATAGTCCTTAGCCCTGGGTAGGAGAGGAAAAGCA-ATCACGAACACAGAAACCTGTCACTTC---AGACTCTGGGAATGACCCTCAG----TGCAGGATACACAGGGTCTTCTATAATATAACTGCTGACAACTGCTGAAAGGCTGCAGGCAGCCTCTGTCGAAG-----GGAGCTCATTAGCTCATGTAGCTTATGT---------------------ATCCAAGGTTGGACCATTCTCATCTGTGGAAAGCCttatacttgaaaatattttaaaa-------tggggctggggatttagctcagcgg-cataagcac---ctgccttgcaagcaggcggttgtgagttcgatcc-----------------------------------------ctggtaccgatt---------------------------------------------------------------------aaaaaaaatatatatatatatttt-----------------------------------------aaaataatgcatagGAA----------------ACACGTTCACTAGAAGGAA-------AAATCAG---AT----AATATATCACATTCTTATCA-TCAGAGACAACCAGTGTTAACTTTTTGATATACAGccttccagattttttttttt----------ttttttttttttgaggcaggatctt---------aggctacccttgaacttgctctgtagcccaggctggctacaaactc-----tcagagatcctcctgcctcagtctgggattacaggtat---------------------------gtgct-------------gccATCCTCA-actataaatttgta----ttttctgtacATATGTATTGTTAACGAAAAAAGAGCATGATGGTCTCACTATGAAGGTCTGATGATTACATG

a score=108968
s chr3           104803959 3953 + 160039680 [encoded data, 4377 characters]
s HiC_scaffold_1 115339108 4070 - 233722169 [encoded data, 4377 characters]

a score=7439
s chr3           104816524 291 + 160039680 AATGATAGCcctgataaattagcttagtg-agaaacttt-------------accgctcagatgatctgatcaagttccacaccc-------------------------tccactttccatatgtaaccttctggtctgtttatagcaagaatt-----gctcttgatgtatgat------gtttccattcagtaaacaacacccagacatctgctttaagtccctagcaatcc--gttgtatttggagttaggcactcttttttccctacttccaaagtACTGGACTTGTGATCAGAGCCACACTGCACTTTGTGGACATAGGTGAACACATGGGTGGAGA
s HiC_scaffold_1 115347153 341 - 233722169 AGTAAAAATCCTGCTGAATCAATTTAGTGTGGAAACTTCTCCCTGACTTACCATCACTCTCGATATCTCATCAAGTTCCACATTTCCAACCTTAGAATATAAATCTTCGGTCTGCCTTTCACAAGAATCCTGTAGGTCTGTTTA--ACAAGAATTCCCCTGCTCTTGATGTCTCATTACTAAATTCCTATATACTGCCTGTTGTCTGTTCATTGGCCATAAACCCCCAGCTGTCTTTGCTGAATTTGGAGTTCAATGTTCTCTATCCAGTAATGCCAAAGTGGTTGACTTGTAGTCAGAGCCACTTTGTACTTTGTGGACACAGGTGAATTCGTGTATATAGA

a score=70903
s chr3           104816911 3895 + 160039680 [encoded data, 4340 characters]
s HiC_scaffold_1 115348267 3810 - 233722169 [encoded data, 4340 characters]

a score=39878
s chr3           104822743 949 + 160039680 agcctAAGAGACTATTCACACTCAGGAAGGAGCTGTTCTTTACAAGTCTTTGCATATTTACTGAGTCTATACTAGTCCAAAGTAGGATACAATTTCAGAAACCTTGAAGAATCTCAACAAATAGA-TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGACAG---------ACACAATTTTAGAACAAAACAGGTGTATTTCTATTGGGCTACCTGGTACAGAAGACAGTGTGGC---ATGGATGGATAGTATGAATGACAAATAATACAAATATATTTTATTTGAAATAAAC-AAAAATGCTTACACAGCTTTCATTTGCAAACAAACTCCTGCTTGACA-GTATTACTGAGCAAAAAAGAAAAGAAAGCTGAAGC--CAACAGCCTTCTGTTTTACCTTGTACTTGGGGACAGGTAGGAAGACACTACTTGGTTTTTAA---------------AAAACTGACCTTCCCCTAAGGCCTGGTCATAGAAGTGTAAACAATGTAAATGAATCCACCATTACCAGTTGTCATAGGTCACATCAC-ATTACCTGTGTGTTCTGAGATCACACACACACACACACACCTGCCAATATACCTGGGAA-GGTAGCTATATCACAGTTACACATGAGTTCTAGGCAGGTAGGATGATGGAAAAG--ATGAACTGGAATGACTTGGTCATCCTGTTTAGAAGGAAGCACTAGCACTC-------TGACATACTG----ACAGATGCTGCCTGGGAACCGTCCTTTTCACTTTGGTTCATTCCAGCTTTGTGAGGGACACAGCTATTT-ATTCGTCTGCTTACAGAACAATCCTGCCAGAGAGCA--TAAAGCAAAAATACCTATGATTCCTTCAATGTCTGTGTTTTCAAGTTTTATATTCTACTACATTGATAGTATGTCAGCAGTTCTCAA----------CTATGAAAGAGCAATACT---AATGGGCAAAACTCTTCTAAAAATGCCAACATC
s HiC_scaffold_1 115355301 960 - 233722169 AGCCAGAGACTTTGCTCACACTAAAAAAGG--CTGTTTTTTCCGTGTCTTTATATATTTACTGAGTCTATAATAGTTGAAAGTGGGAACCAGTTTTAGAAAGTCTGAGCATtctcaacaaacaaaatcaaacacagcCAAATATCT-----TGATAACAAAGGTGGATGAGATGgacaaaaaaggaacaattcagaCAATTTTAGAACAAAACAGGTATATTTCTATTGGACTATCTGATACAGAAGATAGTGTGGTATGATGGATAGATAGTATGAATGACAAgtaatacaaatacattttatttgaaataaacaaaaaaggctAACACAGCTTTCACTTAGAAACAAACTCTTGCATGACCTGTATTATTGAGCAAAAAC------AAAGCTGAAGCATAAACACCCTTCTTTTATAACATGTATCTGGAGATAGGAAG--AGACACtacttgttttttggtttttttttttttttttaactgacctCCCTTTAAGGCGTGGTCACAGAAGTGTAAACAATGTAAATGAATCCACCATTATCAGTTATCCTA--TCATATCTCTGTCACCTGTGTATTCTGAGAT--------CACACATTCACCTGCCAATATATCTGGGAAGGGTTGCTATATCACAGTTGCTTTTAAGTTCTTGGCAGGCAGGACTACGGAAGAGTAATGA---GGAACAA-------ATATTGT-------AAAACACTAGTATTCCCTTAAGTAACAGGTTACAACAGAGATACTGCCTGGAAGTTACTCTTTTcactttggt---tttagtttttgtgaTTTATAGAGCAGTTTGATTCACTTGCTTACGGTACAATCCTGCCACAAATTATTTAAGGACAAGATATTCATGATTCCTTCAACACTGCATTTTTCAAGTTT-------TACTACATCCACAGTATGTCAGCAGttcttaaaaacacacacatacacaagaacaaaaatgtaaatgggtAAAATTCCTCTAAAAACACAGGTATC

a score=53581
s chr3           104824273 1425 + 160039680 acaGACATCCATGGTTACAACAGAACCAGATGGGAGGAGACAATGAGAAAATG-----------AAAGTAAGCAAACATTCATGTGCAGCAGGGGATGTGGTTCAAGTCTTTGGATTTAAAATCAAGA---CCCTAGAGAAGCTG-CTGCCATGGAATTTCCAGGAAACTT----TGCCTCC--CAACATGGACCCCAAAAGCCCCAATCCAAATGTCTGAAATCTA-CAATTGTGAGATGCTGTAAATGAC---CAAAGCAGTCGGACAGAGAAGGA--GTGTGTTGTCCACTTAGCTC---TTGGTAGCATAGCCTCTTCAGCAATTGGTGGATCACTAAAAGCCACTGAAGCACTGGAAGTGCTTTAAAGCACAGGGGTAAAAA-GTACTCAACAGATACTCTGTAAAAACCAGTCCTAGGACTGCATGGCTAGGAAA-TGTTCTAAACAGTAAAATGACTTCAGGATATAGCTCTT------------------CGACATTAAATGTAGCAGAA---TTAAAAAAAAAGATTTACAAGTAGATATAGTGATAACAGAAAATTACAAAGCAAAGAACACACACAAAAGAATCAAGACAGTGCTGTAGGTTCAACAGTATTCCATGAGGCTAGAAGATCTGTTAACTTTGTTAAC--TAGCAAAATATCACTCTTGTTTGTTTATAAATCACTTATTCGTCATATGACCACACCGTGTTGAATCCTTTTCTTTCCATGTACTGGAGACTCCTAGAGACGGCCTTTAAGCATTCTGCATTTCTTTGCCAATCTTGTAACTGAGTATCTTGTTCCAGTCGATTTTGGTGCGGGTAACTGGAAGCTGCCGGCGCAAGGCCTTGAACGTGGTGTCTGACATAGTTTGGTAATTTTCACTAATTGCTGTCTGTAATAGATAATCGATGATGAGTTGTTTGTAAACAGGAAGGTGATCAG--------ACACAGGA---------CACAGGAGACAGCATGGACGC--------TGGGCTCCTCTTCCATCCTGAACGCA--AATCA---AACGCACCTGTCCTCCTGAGACG---CAGCTACCGTCTCATAACTGCAAACAGAATGCCAAACTGCAGGGCTGTGAAGGCTC-ACACTTAGTAATAC-CAACAGTCTGTGC-TTTTTGTTAAAGGACACAGAGGATTGAACAAAATATGTCTACAGAGAAATAAC------------------------TTTCAAATCTTACCTGATACTCATTTTCTGCACTCTCTATGATTTTAATAAACTCCTTGGTAGTTTGGATTTCATTCTAGTAAAAGAAAAGAGGGAAGTAGTATTTT--TAAAAATATGTAAGGAATGAAGACACCGAAA--AGCCCACTCTATGAACTGACACTTGTATAAGGGTCCTAGTTTATCCACTGCTCATATACACATTATCTCTTCAACCCACTGTCAAAT------------GGGTTATGTTATC------------TGACAGATGAAAACCACAACTTTCTCAAGTGACCTGACCAAAATTATACAGATTTTAAATAATAAAG
s HiC_scaffold_1 115356252 1507 - 233722169 ACAGGTATCAATACCTACAATAG--------GGAAGGAGACAATGAGAGAATCTCCtttcccccaaa--aaacaaacat--gtTTATTGAAGGGAATGTGGTTCAAGTCTTTGGATTTACAAGCAAACTCTCCTCAGAAAAGCTGGTTATCATGGAATTTTCAGAACACTTCTTTTGCCCTCTTCTAAATGAATCTGAAAGGCCCTAATgcaaagttttgaaaaataacagtTATGAGATGCTGTAAATGATGATCAGAACAGTCCAAGGAAGAAGAATGATGTATCTTCCATTTAGCTACAGTTTGTAGCACAGCCTTTTGAGC---TGTTGGATCAGTAAAAACCACTAAAGTACCAGAAGTGCTTTGAGTCATGGGGGTAAAAAAGTACAGAACATAT------TACTAAACAGTAACAGGACTTCACTGCTAGGAAAAttttctaaatagtaaaacaactTCAAgatagatctctctctctctctctctctctccaacatAAAACATAGCGGGAAGTTGGGGGGAGAAAATTTACAAGTAGATATAGTGATAACATAAAATTACGAGGCAGAGAACACA-------AGGTCAAGACAATGCTATAGGTTGAACAGTATTTCATGAGGCTAGAAAAT--GTTAAGTTTGAAAGCCCTAGCAAAATATCACC----TTTGTTTATAAATCACTTATTTATCATATGACCACA---TGTTGAATCATTTTCTTTCCACATATTGAAAAATCCTATAGCCAGCCTTTAAGCATTCTGCATTTCTTTGCCAATCTTGTAGCTGAGTATCTTGTTCCAGTCGATTTTGGTGCGGGTTACTGGGAGCTGTCGGCGCAAGGCTTTGAACGTGGTATCTGACATTGTTTGATAGTTTTCACTAATTGCTGTCTGCAATAGATAATTGAAGATGAGTTGCTTG--AACAGAAATGGAACTGGTTATGATAGCACAAGAAGCCTGTGTTACAAACAACAGATAGGACATATTTCTAGTGAGTTCCCCTCCAATTTCTGAAGCAAGAGTCAGGTAATTCA-CTGCTTTACTAAAATAATTCAGAAACCT-----TAACTGTAGGCAGAATGTCAAATTACAACGTCTATAATTCTCAATATTTAACAGCACTCAACAATATATGTATTAGTGTTAA--GACACAGAAAAGCCTAACAAATCTGTTAATAGCAAAATAATGAGATTCAAAACCTAGAAAATTAATTCCATATCTTACCTGATATTCATTTTCTGCATTCTCTATGATTTTAATAAACTCCTTAGCAGTTTGGCCTTCATTCtaatgaagaaaggaag------aacattttaaaaaaaatatgtaagcaGTGAATAAAAAGATACTAAGTCAATCTAT--ATTAACATTTGTATAATAATTCCTAGTTACAAAGTATTCCCATGCATA--GCTCCTTTGATTCGTCATATAATCTTATGAAGTAGAAATTATACTATCATCAGTTTCATTTTGCATACAA----CAGAGTCCTCTTAAGTGACTTGACCATAATTATACAGCTTTAGAATAATAAAG

a score=9254
s chr3           104828413 271 + 160039680 TAGTAAGAAGCATAAATAGAAACTGTTAAAATTT--GCATCTTTTAATTGTCACATGCAAAGCTAAT-TTTTTAGGAAAAGACAAG-------TAAGGCCAACATCTCCCATGGCATACTCACAGAAACAGTTACTGAGTCCTGCACATCTTTATGACTAACCAGCTGAACATTGCCATCTTCATAATAATGAACCTG--TGAGATCATATTTGAGAAGGGTTAGGCACAGTTTATAGAGAAGCATACTGCCGAGG--CACAATCCATGCCGGAGGCCATTTTCA
s HiC_scaffold_1 115366873 275 - 233722169 TATTAAAAGGCACGAATATAAG-TACTAAAATCAAAGCATC----AGCACTTAGGAGCAAAACTAgtattcttaagaaaaaaaaaggaatgattgAGACAGACCTTAAATATGGCTTACTCACCGAAACATTTACTGAATCTTGCACATCTTTATGACTAACCAATTGAACATTGCCATCTTCATAATAGTGAACCTGTATGAGACAACAGTT----AAGTTCATATGTAGTTCATATAGAAACCTATTGCTTAGGGCCCAAATCCAT-CCTTAGGCTATTCTTA

a score=32728
s chr3           104832888 2535 + 160039680 ATGCTTTTGATTAAATTAGACTTTGAAAATGTGAATCTTGCAATTTTTTTTTTTAATTAAAGGCATCACAGTACAACACAGGCATGATTAGATACTGAACATTTAATTTA-TCAGAAATATTTAGTCTGACTCAGTCAGTTAGGCTCAAAATAAA--CCACCTGAATTAAGAGTGCTAAATCTCTTCAAAGATACCAGGAGACTTCAACTGAGACAGATAGCAAATGAGCTAACAGCCACC---ATTCAGCTGCCTGTCC----TGACATGAGCATTAAGAATCTCCTTCACTTGACTACTGATATCCCACGAGATGGCACCACATGTAATATTTTCTAGAATTCCTCTGCTTTAGTTTAATTTTAATTTAGAACTTTTCTATCAAAACAAAACACCACAAAAAAACCTCCAACCAATCAACCAAAGCCCCAAAACAAAATCCAACAATAAAACTCTTATAAAAAAACAAAACAAAAGCTGGGGGGGGGGGCGGGCGGgcggggcagtggtggtgcccgcctttaatcctagcacttaggaggcagaggc-----aggtggatttctgagt--------ttgaggcca---gcctggtctacagagtgagttcaggacagccagggctacacagagaaaccctatctggaaaacaacaaCAACAATAAACAAA--------AAAAAACCTCTTAAAAAACAAACAAGTAAGCAAACAAACCCACTTgatctctctgcatagccctggatgtcctagaa---------------ctcact-atttagaccacagtggcctcaaactcactgggagccacaggta--tgccaccccttct--gttgggactaaaggtgtgc---atcaccacac--ctggcA---------TCCACCTCCCAACTACTTAATACTCACTTATTCTTTCTTAAAACCAGTTTGATTATTCCTAAAAGACCTTGTTATGCTTGAAAGAAAAAAA-AGCAATCCAGTAGCAT-----------TCCTCCGTCATCAACCCAGAACAGCTCTTTCAGT---GACCTCCTGGGAAGGAGGCGGCTTCTG----CTTCTGCTCACTGCCGCTGGCCTCTTCTG----------CATCAG-TTACAGTCACGTCCTCTTCTCCCTCCTCTCTGTTCTGTGTGGGGCTGGGAGAAAGCCTGGAGCCTTGCTCATGGAAGGAAG-----TGTTCCAC-------------------TAGTCTTTATTTCTAACACCAGAACAAAGAGCAAATGGCACCTCTATTTTAACACATGACATCTCAAC-ACCATCTATAAATACACTGGACTCTTACCTGAATCTTGAGTACTCCAACCACCTGGGCTGAAGGTGGTGTAATGGTGAACTTCCACTCTGATCTCCAGCGACCATTCCTATCAAAACACACAGAATGCGATACTGCACAATTAGCAGCA-GCACGGGAAAGAAGTG-ACCA--GACACAGATGTT-TGCAATAGTGTTGGTGGGAGGTAGACTTG--ATGTGACAACGTCAAGATCATCACTACATAAA-----AGCTGGGATCCAGGTGGCTGATCATAAACAAGCCTTTCCTAAGT-ATGTGGA----GTCTATTTCTCCTTTGCCCCTC-TGAAGTAGAG------------------------GCTCATCT---CCTATCAGAGG---AGACCGCTTGGGAACACCAT--ACT---GTACAACCAGCCCCAGGAACGGATAATCCCAAAGAGACCTAAGACTTCCAGCTGCATACTGTGTAAATCACATGTTCTTCTCACTTGGTA-----------TGACAAAAGGatacaattaca------aaag-----gcttag----------------------------------------------------aaatggaaggaatc-------------------taaacaatgtctaagcccttcattttatagatggagaactaaagtctctaaatcaaataatctatcccaagttaGTTTTAAAACAAAACCCCAGTCACTGGTTTCTTTATAATATAAATTAGGTAAGAACAGAAGAGAACATCTATTTCTTACCAGAAGTTTTTTGGTTGAAACTGGTGGCTTTCAATACATGCAATAATGGTCTGTTGCCCATCTATAGTTTTAGCGTAAACCTATTGTTGGGGAGAAAACAGTTAGACATGAAAAATATATTTACTCTATAAAAACTGTTCTTAGTTTTAGCAGTGCACTAAATGGAAAACCTTAAAGGGCGATAAGTGCCAGAGGCTATCGGGCTCATAACACAAGGCCTTGTTGGGATGTGAGCACAAAGCAGAA----------------ACAGAC-----TACAATGACTCCCAGGAGGC---TACGGTTTCTGTCTTATCATACTGTAAGTGAGATACCAGGTAG-CTGGGCCTTACAAAACAT-------------------------------GCATAAG--------------------------------------------------------------------------------------------------------------------TCTGACAGGGACTGAA-GCTAAGAACAAGTCAACAGCTCAGGCAGGAAAACAAGGATGTGCTAACTATCTGCCAATTGGTCCTGCCATGTTAGTGGAGT---TGGGTGAGATCTACTAGTGGGAGACAAAAAA-AGAAAAAAG----TAGGCCATGTGTTAAATAGCAGGTATAAAGTTTGGACTGTATTCTATTTATAAGAGACAATAAAACAGGACCAGAACTGTTAATTTT--------GGTAATGCTGGTACAGAGGATAAATGGAAAAAAACCTAGAGGTCAGGAGGAGGCTAC-AAATTAACCT--CGGCAAAAGTTTAGGGCACTGTGAATGAGAATGGAAAGGAGGGATATTATGCAGAATGCATAAAAGT
s HiC_scaffold_1 115370304 2785 - 233722169 ATACTTTTTATTAAACTATTCCACGAAAATAGACAATTTTTGCTAATTATTATTAAagcaagacaatataatagaatGTAAGTACAATTAGGTACTAATCTTTTCACTTAAGTATGACTATTTAATCTGA-------------ACTTAAAATTAAGTCATCTTGAATTTACAAAATCAATCCTCTTCTAGGATATTAGAAGACTTCAACT----CAGGCAACAAATGAGTTAACAACTAACTGAATTCAGATGCCTGTCTCTCTTGATACTAGTACTAGAAATATACTTTGCTGGGCTGTTTATATTCCATAACATAAGACACCTGGCCACCCTCTCTAG--TTCCACTGTTTTAGTTTAActt-aattg------tttcatttattccaaaatgttaaaaaa----------caaacaaacaaaaaacccaaaactaaa------aacaaaacactca-acaacaagaaaac-------------------------------caCTCATGTAGCTT-TCTTTAGAACTAAGAGTTAAGGTGCAGAGAATAGAGAGGGGAAATAATAACTAAGAAATGTTATGCTCATGTACCCACTTCCCATGATGAGTTAATAAT--TTTGTACTgca----aaaacactaataaaaatttaaaaagtacaatacaAAGAGTTATATGATAAAAGATCCTAAAGTTACAGTGACTAg---aatatagtaactt--tttttttgtgtgtgtgggggtacTTTGGAGTGAACACAGGGTTTTCTCACttagctagatccc--cagcccaaAACTTGTAAAAGGTCTTGCTTAGTTGTTAGTTTGTCTTGGGTAGGCTAGAATCTGTCCCAGATTCCTACAGTGCTGGCAGTATAGGAGTTGTCACCATGGCCAGTTATAATTAActtcttatattat----------------tttctacAAGTATGTTTTAtctttgaaacacaaaaataacaaataagcaGTATATTCTATATGATTATCCTTCACCAACCCAGAATAACTATTAAAGTACTGCCCTTTAGAAGAAgaattctgttctgttctcttctaTTCTCTACTTCTCTTCTCATTTGATTCCCTTTTTATCTGCTTATAGTTTagtcc-------cccccccttttttttttggttaccagGAATTCAACTTGGGATCTGGTGTTTGataggcaggtgtttgtgccacagAGCTACTTCTCCAGCCCTAGTCCTTATTTATAATATGAAAACATAGACCAACTTGCATCTTAACTTAAAAACGTGGAGTTTTAACCATGATCCATCAACATGTTGGAATCTTACCTGAATCTTGAGCACTCCAACCACCTGTGCTGTAGGTGGTGTGATGGTGAACTTCCATTCAGACCTCCAACGACCATTCCTATTAAAACACACATAATGC-----TGCAGAATTAGCAACAAGCACAAAAATGAGATGTGCCACTGAGGCAGAGGAAATGCAAAAGGGCAGGTGGCAGGGATGTTTACAAGTTGACAAACCCAAAGCTCTGTCTACTCAAATTTAAGACTGAGTTCAAGTGGCCTAACCATAA----GCCGTTTCTAAGTTACTTGGACTTTTTCCATTTAGTTTTTGTTCCCCATGGAGCAGAAACATGCCTACTGTGTTCAGTGGGAGCTCATCTAAATCCAATAGATGGTTAGGCTGTTGAGTTACATTATTAACTCAAGTATTACTAACTCAGGTAAAAGTCAA---------AATCTGA---------------ACTGGGCATTTCATCAATTGTTCTCActcagtaaaataatttttttaaaaaaagatacaattaCAGGCTggaaagtgcctgcctggcaagcatgaggtcttgtgttcgatccccagtaccaaaaataaataaataaataaataaaaacaattataaaatctTATAATTTGTCTAACAATGTCTAAATTTCTCACTTTATAGATGGAAAACTGAAGTCTGTAA-TCAAATAATTTACCCCAATGGAGATTAAAAATCCTGCCTCAACTGCGGGTTTCTTTCTAACATAAATTAGATACAAGTAGAACAAAATATCTATTTCTTACCAGAAATTTTTAGGCTGGAACTGGTGGCTTTCAATACATGCAATAATAGTCTGTTGCCCATCTATAGTTTTAGCATATACCTATTATT-GGGAAAAAATAATTAGACTCAAAAA--ACATTTAATCTAAATGACACACACTATACAAGAGCAGCACGCTAAAT-------CTCTgatcaaaacaaaaacctgaaaaaatt----------------gttttcttcaaatctgTACACAAAGGAGAATGTGTTAGGTTCTGGTAGAGGCACTTGTACAATGAATAC--AGAAGCAAATATTGCTTCTGGCTTAGAGTAA---AAGTGAGGTGCTGCTTAGATTGGGCCTTAGAAAACATAAGATTCcgggcctgggggtttagctcagcggcataagcgcctgccttgaaagcaggcagttgtgagttcgatccctggtaccgaaaaataggaaaaagacaatattaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaagaaaacataagattcTAGTAAgcacagaatgaaaaagatgaggCAATACCTCAGGCAGGAAACCAAGAACTTGTTAGGCAAACAGTAATTAGTTCGCTTAGGTCAGAGGGTTATGTATATGTCATGGAATAG-GGGAGACAAAAAACAGGACAGAGGGTTCAGGCCATGAGGT-aatagaa------------------------------aaacagcaaaataacatGACCAAAACTATTATTCTGTAAGAAAAATCAATACTGATGTACAAGAT-AATGCAGGTAAAGCTGGAGGTTGGTTAGGAGTCACGGAATTAATCTTCTAGGAAATGATCTAGGTGGGATCAGtggaaacagaaaggagagaacacatacaaaat--ataaaagt

a score=26788
s chr3           104839611 527 + 160039680 TTAAGAAAGAAATTTCAAAAA--------TTTAGAAATTATTTAAGGAATAAAATAAGGAGATGACAATAACCAAGAGAAAAGAAGTAAAGTCTGGTGGGGCAAAGGTTCAAAAGGGTAAGGTAAGCGTAAGAAAAGTAACTTTAATCTGTTCTCCGA----GGGACAGGCAGATACTTAACAGTACAGAAGCCGTTGGAATAATGATCTTTCACATAGGCTCTCAGAGCACTGTCACACGACTCCCTCCAAGACTTCAAGCCTCCATCCACATCCTCTGGCTGCGGGTCACTTGCTTCTTTCCGTAAATGATCAAACTTAAAGGAAATTTGGTTTCTTGGATCTAAAAATCTGCTGTTACCAAGGTCACCATGCTCTGTAATTAAGACCTTCCAGAGAAGAATTACAAATATAAGTAGTTCTATAAAAAAGACAATTCTT----ATGTTTT------------GCAAAAAGAAATAATATCCTAAGAAAATTAACTTTTAAT----------TTCTTTTCCACAATGACTTTTAAAGCACGTATC-ATTTTTATTCTCATAAAAA
s HiC_scaffold_1 115375169 550 - 233722169 TTAAAAAggaattttccaaatatttacaTTCTAAAAATGATTTTGGGAATAAAATGCACAGAATACCATAAACAA----AAAGAGGTGAAGTTTGGTAGACCAAAGCCTCCATGGGATAAggtaaatgtaagaaataaaac--------attctctGATAATGAAGCAGACAGATACTTAACAGTACAGAAGCCGTTGGAATAATGATCTTTCACATAGGCTCTTAAAGCACTGTCACAGGACTCTCTCCAAGACTTCAAACTTCCATCTATTTCCTCTGGATGAGGGTCACTCGCTTCTTTCCGTAAGTGATCAAACTTAAAggaaattttgtttcttggatcTAAAAATCTGCTATTACCCAGATCACCATGCTCTGTAATTAAAACCTTTCAGAGAAGAATTATAAATATGAATAACTA---GAAAAAGCCAGTTCTTAATCACATTTTCCAGTACAAGCAACAAAGAGAAACTAAActct-atatatttaatatttcatttagtcaaaattttctttcatactgATTTTCCAATCaagtcttaatttttatttttataaaaa

a score=12384
s chr3           104840699 282 + 160039680 AAGAATTTTTAAATATGTAGACTATT--------TTAAAAATCAAAGACATAAATATAT---TAACAGCCAATTTCCTA-TCTGCTCTGGCTTTTACATCTCTACTACCCG----GCACAGACCGTGGAACAGGCAGTCATTACCTGGTCATCGTAGCCTTCTATCTTCACGGGTGTGAACTGATCCATGTTATACTGGGCAAATGCACTAGTTAAAGAAAGAATTGAAAAagtcaatagtatctctactttagcagctactttaatccaaacactttgaagccatccttaactgttc
s HiC_scaffold_1 115377018 292 - 233722169 AATAATTTCCTAACATGTAGAATATTCACCAAAATATGAAAACTAAGACATGAATTTATATTCAGCATCTGATTCACAAATCTGCTTTGGTTTCTAGATCTCTATTATCTGCCAAACATAGGTTATCTAACAGGCAATTATTACCTGATCTTCATATCCTTCTATCTTCACAGGTGTGAACTGATCCATGTTATACTGGGCAAAtgcactgtttaaaaaaataat---agaagtaaATAGTTTCTCTATTTTACCAGCTGC-TCAAGCCAAAAACTT--GAGTCATCCTAGGCCTTTC

a score=9423
s chr3           104842639 140 + 160039680 GTGGATTTAGGA--GGTACTTACTGTGCTGCCCCTTCCCTGAGGAGATTGTCATTGTTAAGCAGTAGCCGGACATCTGAGGAGGAAAGCA--TTGGAATACTGAGTACAGAACAAACTCAAGAAATTTTAGCCCATTTCTAGAA
s HiC_scaffold_1 115380979 144 - 233722169 GTGGATTTAGAAAAGATACTTACTGAGCTGCCCCTTCCCTGAGGAGATTGTCATTGTTAAGTAGTAGCCGGACATCTGAGAAGGAAAACATGTTGAAATGTTGGATACTGGATAAGTCTGAGAAATTTTAGTACATTTCTAGAA

a score=10493
s chr3           104844873 159 + 160039680 GACAGTGATTAAGGAGTACTCA------CTCAATATTAATCTTTACTTACCATTGAATACTTCATTAAACTCCCCTGGGGGTGCATGGGTGATGAATTTAGCGGCTATGCGGACCTAAAGAAAAATAAAATTTATAGTATAATAAGTGTACTGTGAAGAGAAACA
s HiC_scaffold_1 115384130 159 - 233722169 GACAATAATTAAGTAGGACTTAAAATAACTGAATACTAATCTTTACTCACCATTGAACACTTCATTAAACTCCCCTGGGGGTGCATGAGTGATGAATTTAGCAGCTATGCGTacctaaagaagaataaaatat------tagtaaGTGTACTTTGAAGAGTAACA

a score=9997
s chr3           104854410  740 + 160039680 AAAGCTCTTAA----GGGAGCC---AGTCTCCTTGGCCTTGTCATGGGGAT-TTCCATCATCTTTCACCTTCTGAAGCCATGATTCTCTAGCACGTTT------------TATGA-AATAATTTTTGGTGGCATGCTTAAA--GGTCAAAAGACCACTACCTGGATTTAACAA--ATTATGATGC-----TACCAGAGAATCTGGCTGTCTCA-----------CACCTATGCAGG----------CATCAACTTTAGGGCTGTGCCACTACATCAGCACAACT-------AACTGTTCAGCATCTCCTCTTACTATCTACCACCTACATAAGAAGCCAAGGGCCTAAGGATGATACAAGCTCTAAAAGCAGATTGCCAACACTGTATCCATTCTACTGATTACTAGTTCTGGACA---------GTTGTTTTATTTTCTATTTTTTTTTAGCTTCACTTCACTCCTAGA--------------------------------AATATTTGAACAAGAATGCATATTTATAAAGTATTTAACAGGTTATCTCAGTGCAATAT----AATTCACAAGGCAAAGTCTGGTCA---TTTAAAAAAAGCACCACCTTTCTTTGATACAGCTTTT-------------------------------------------------------------------CTGCCT--------------------------TTATGTTACACTATGCCT---------------------------TCCACA------------------------------------------GTAATGTCTGGTTCACTCAGATAACTATTGTATCTCACAA----TAACTTAAAATATGC-----ATGTGCAAGCAGT------------------AGTAAAGATAAATTTTGGATACTTCTCAAAACTGAGTACTATAACTGTGAAGAATTTATAGTAACCCAGCTGGA-------AAGGAAGTAAAGGCTGGAGGCAGAAAGAACAACTAAGCATGCTGT
s HiC_scaffold_1 115397411 1022 - 233722169 aaaattcttaaaaaggtAAGCCTGTAGTCTTCTTGGCCTTGTCATGGGGGTCTTTCATGATCTTTAAC-TTCTAAAGCCATATTTTCaatgtgtgtttatattttaaacatgtgCCAAGAATTTTTGGTGGCATATTCAAATAGCCTGAAAAAGCACCAAGATATTTCAGCAATAATTATAATGCAGTATCACCAAAGAACCTCAGTGTTTCAGTGTCTACAATAAAGTATCCATgtctttttttccattaatttggTTGCTGTTTAAGGCAATTATCATTTCTGCAGTAGAACTGCTCATTATCTTCACCAAATATCTACT-----CAAAGGAATCAAA------ACGGA--ACACAGGCTCTGGAGTCAGACTGCTGGCATTGTATCTGTTCTACTAATTGTTAGTTCTGGACACTTGGTCATGTTATTTTAACCTCTAATGTGCCTTA-CTTCAATGCaactatagaatgggaaaaaacctAATTGTTTTTTTCCATAGAATGTTCCAAAATGATCTTGCACACATTAAGCATTTAA-ATGTTACctacatgaaaaacaaagaattcaTAAGGCAAAGTTTTCTTATGTTTCAGTAAATCTACCAactttttttggtttgtcttttgtttttgttttttgagacagtatcttgctatgtaacccaggctggcctctaattcaaatctaccctcctgcctcagtttggggaatgttgggattacagttgtgtgccaccattcccagcccTACTATCTTTGATGATATAGTGTCTATATAGTGTCTTTTAGCTTATATGTTAAATACCATTATTGACAACGTGTCATCTGATCTACTCGAACAACTATTCTAGCTCACAGATGCCACCCTAAAATATACTGTATTTGTGCAGCTATTTTACTAAGATTTACCCAGAGCAAAGTTCAGTAGTATA-ACAGTTCAAAACTCAGTAACATAGCTGTGAATAATTCATAGTTAACTAACTAGAATGTGCCAAGGAAGGTTAGGCTGGAGGCAG---GAACAATTAAGAATGCTGT

a score=95036
s chr3           104863144 4089 + 160039680 [encoded data, 4358 characters]
s HiC_scaffold_1 115404107 3911 - 233722169 [encoded data, 4358 characters]

a score=23351
s chr3           104867624 679 + 160039680 tcagcttagaatttttgagctttgcaatagtgggaaagctgtct--gcattccatagaacttttggattttgatcttttcccaagctagcattatgatctctatggtactgggcagcaacagtaagccagtgcttcccacttgcattcatacaaagtggagagtagacaagcagtgctatccaggacattgtgttgctaagtaatggcagctggaaggttagtgatgtagcttacattttttacctgcagtatttttagtctata---ggcttatttgaacatagcctcatcagagccc---aggCTTCTTTACTGCTTACCTCCATCTGCTGAAACATACTTGCATGATTGCAATGGACTTAAAATTTGTACTTTGTAAAAACTTTAATGTTTTCT--CTTTTAACAGTGACAGGGTTTTTAAGTTCACTGACACCCAAGTTCTATGTGGCACTTACAGGGACATCTTCTTTGATATCTGGACTAATATTTGTAAGTAGTTTCTATTTTCTTCACCTCTATTTTGATACTCATTTAAAAATTGTTTATATATTTACAAATCTATAAGTATT----TGTTAGGATTTCCAAAATGTGTTTGATA-GTGGGAAAAAGTTACTTAG--AAACAAGTTTGAGAAATACCATGTTTCCTTGTCATCTTTTAGAGCGAGTGGTAGTATTTATTACATGTTA
s HiC_scaffold_1 115408053 652 - 233722169 TCAATTTACACTTTTTCAACTTTACAGTGGTACAAAAGCCGTTTATGCATTCAGTAGAAATTTTGAATTTCGATCTTCTCCTTGGTTGGCAGTATACCCTGTCCAATCCTGGGCAGT---------CAAGTACC-----------------CAATCTGGAGGATAAACAA---------TACAGTATACTACACTGCTAAGCTATGATATTTGGAAAGGTCAAGGTATCATGTGCATTTTCAGTTTACACTATTTTCAATTTGCAAAGGGTTTATCAGACTATACCCTCACTGTAAGTTGAGAAGCATCTGTACTATTTATGTCCCCCCACTCAAAGACACCTACTTATTTATaact-------aatttgtatttttttaaaactttaattttttttttcttttaacagtgaCAGGATTTTTAAATTCACTGACACCCAAATTTTATGTGGCACTTACAGGGACATCTTCTTTGATATCAGGACTGATATTTGTAAgtagtttccattttctgaattgaTGTTTTGATATTTGTCTAAAGGTTCTATATATTATTACAATAATTTAAGTACTTATGTATCAGCATTTTTAGAATGTGTTacgcatttgaaaaaaaattacctaGCCAAATAAGTTTGAGGAACAGTACATCTGTCTCTGTACTTTTAGA--GATTGGCAGTATTTGTTGCATATTA

a score=17313
s chr3           104870788 651 + 160039680 TTCAATTTGTATTTATGAATTGCATTTTAAGTGAAAAATTGTTTCTCTTTATTACAGATATTTGAATGGTGGTACTTCCATAAGCATGGTACATCTTTTATTGAACAAGTGTCCATAAGCCATTTGCGGCCACTGATGGGAGGAACAGAGAGTAGCATTTCAGAGCCGGGCTCTCCTGCCAACAGCAGAGAAAGTGAAACCCTCAGACACCACCATCTATCAGGTGTTTGGTTTTTTGTTTTTGTTTTTGGTATTTCCAGAGTGGTAT-----AGATTGA-TTTCATTACAGAGGATACAAAAATCAGTCTCAAAACAATAAA-----GCAGTTTGTGTGTTTATGC-ccccatcac------------------------atgtaatgatagtaggatataggggcttagggaggtgatcagattataaaggtagaa------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccctcatggatagaattaatgtcctaaggaaagatactccagagagctatttattcttgtcactttatgaggaaataataagaaagtgccatttacaaactagg----------cattaaaactgctagctccttgaacgtggatttttccagcctctaaaacaataagaaatacatctctgttgttCTTG------TCATTGT------------------AGTTCAAATAGGATAAGACACAGAGATAACCTTCCTTCCTGTAAATgcaagtaagccatgg
s HiC_scaffold_1 115413497 911 - 233722169 TCCTATATCTGCTGATAAATTCTGTTTTAAGTGAAAGGTGTTTTCTCTTTGTCACAGATATTTGAGTGGTGGTACTTCCATAAGCATGGTACATCATTTATTGAGCAAGTATCTATAAACCATTTGCGACCACTGATGGGAGGAACAGAAAGCAGCATCGCAGAGCCAGGTTCTC---CCAGCaacagagaaaatgaaaccaGCAGA---CAGAATGTGTCAGGTGAC---TTTTCAGT-----------GTGATTTCAGAGCTATATTTTTAACATTGAGTTTGACTGTGGGAGATAAA---------CTCAAAACAACACAGTTCTGTGGTTTCACTATTTGTGTACCCCCTCATTGATACACTGAACCCTAATCATCAGTGTAATGGTATTAGGAGATGAAGTCATTGGGAGGTGAT-AAATCATAAGAATAGAAGCTCAAGAGTTGTGGATATAAATGGTGAACATGGCAATACTGTTAGTGTAGGTTGAGACATGTTAGTTCTCAGATGGAactatttaaaaatcaagatattCACTCCCATGTGTTTCCATGGCTTATGAAAAGGGAAAGTAAACGAAGCTTTCTATCCTAAATTAGAGGAGATTTTCATATCTGCACACCTCAGCCTCAACTCTATCTAGTCATGAAGATAACCCCTCATGAATGGAATTAATGTCTTTACAAAAGAGACTACAGAGAGCTAGTTGCCTCTTCCGCCCTGTGAGGACATAGCAAGAGGGTACTGTTTATAAAATGAGTCCTCACCTACAGTAGATCTGACAGCATCCTGATCATGGA-TTTCCtagtctccaaaactgtgagaaataaatttctgttgtttttaaattactcAGTGTATGGTATTTTGAGATAGCAGTCCAAATAGACTGAAACATAGAACTTA-ATTCTTTTACATAAATGTAGGTAATCCATAG

a score=11231
s chr3           104873156 474 + 160039680 tgtAATAAAACA--GCTCTAATATAGTACATATCAGGTAGTTCAGGTGGTTGTTTGCATGACT------------AATCCTCATGCTATACAAGTTAGTTCCAGAAGCTGTAGTAGGATCTAGGAGTGGATGAAG--------TTTTAGTAGATCCTGTTT-----------------------------------TAGAGAAGAAACTGAAAACTGAATTATGAACAAAGTTTCACTGAGACAGAAATACAACAATAACTCTATCTGATTCTGATTGGATTCTGAGAGCAAGGGTGACTTGTACGTTTTTCCTGTTGGCTATCTCTAACTGGCTCTGTA--TAGCTCACAGGATGAA--CAGTAAGTGTTGGTTAG-TGAAGATTTACCTGCATGTGACTGAACCA--ATCTCTCCTCTTGTTTT-CAGAATGCAAGGTCTGGAGAAACCCTTTAAACCTCTTCAGAGGAGCAGAATACAGAAGGTAAGAA----TTGCCTTCAGTACAAGTATGGTGTGGGGTTCA-GGTTCAAGTACTGTG
s HiC_scaffold_1 115418692 508 - 233722169 tggaaCAGAACATTACTTTACAATAGCACTAATCACATAGATAAGTCCATTGTTTACATGACTCTTAGTATATTTAATTCA---GTTTAACAAGTCAGTTCTAGATGGTGTGGTAGATTCTATGAA--GATAAAAGTGAACATTTTTAAGAGTTCGTATTTGTGTTTATAATATTGTAAATTTGTAATATTTGTCATATTGTAAGTGCT-AAAACTGAATTATGAACCTAATACTGTGGAGACAGAAATA----AGGGACTAGATTTAATTATG--TGCTTCTCGAAAGCAGAGATGATTCATGCTTCTTT-------------------TGTTTCTGTACTTAGCATACAGTATGTAGGCAATAAATGTTGGTTAGATGAAGATTTAACTTCATTTGAGTAAACTCTCGTTTTGCCTCTTGTTTTTCAGAATGCAAAGTGTGGCGAAACCCTTTAAACCTTTTCAGAGGAGCAGAATATAGGAGGTATTAACATTTTGCTTT-----TAAGTATGATATTGGTCTTATAGTAAAAGTACCATG

a score=15245
s chr3           104874643 367 + 160039680 tGAACAGTTTATTCTTTCCTATTTATTATTTTAATGTTTTATTATTGAACCAT--ACAGT--------AGTACTTTTTAATTCCTTACTGAAATAATAAGCTTTAAAAACACCTTGAAATAGAACTGGTAGTCACTTACTTTCAGAATTTAA---GTGTTGGTTATCGCAAATA----------------------AAACAT----CTTTTGTTTTC-TACAGATACACTTGGGTGACTGGTAAAGAGCCACTTACTTACTATGACATGAACTTGTCTGCCCAGGATCACCAGACCTTTTTCACCTGTGAAACAGACTTTTTACGTCCTTCAGACACAGGTATGTATT---CATGTTACAGACAAT-GATTGTGAAAAATTTTTCAAATGTTCTTTAGAGCTATTATTATA
s HiC_scaffold_1 115423953 401 - 233722169 TGAATAATTTATTCTTTCCTATTTGgt-ttataatgttttattatcAAGTTCTCGATAGTTTGTgaagattatttctttttgttttactgaG---------TATAATAACATCCTGAAATAGAAATTGTAGTTGTGTATTTTGAGAATTTAAATAGTGTCCATTGTAGCAGACAGATGTTTTCTCATATCCAATTCAAATATTTGTCTTGTGTTTTGGTAAAGATACACTTGGGTAACTGGTAAAGAGCCACTTACATACTATGACATGAACTTGTCAGCACAGGACCATCAGACATTTTTCACCTGTGATACAGACTTTTTACGTCCTTCAGACACAGGTATGTATCATATCTGTTCATGGTAATAgactgtaaaaattatttttaaaggtttttatgttaattataatA

a score=70122
s chr3           104880835 3411 + 160039680 acacctctcttgttgtacatgcattttgACTGCAACCTATCTCATGAAGTCAG-TGTTGATTTTTCCACTT-TGGTTTCATGTTTTGTAGTTTGGA---------GTTTTGTATAGAGATGCTCAACCTGGCTCAAAGGGTAAGAGATGGGGGAAATGGTCACTTTTTCTATGCTGGCTCAAAGTACAAATTCATAATTTTACTGAGCAGTGTT--------TGAG---AGTATACATTCAAAATCT----TTTAAAGAGTATGCTTATTTTAAAT----AAAATGTTCTGCAA---------AACAGTATTTGGTAAGCTATACAAAGCTGAAAGGTTATGTGTGTTTTCTGTTTTTGTTGTTGGTGTTTTGT--Attgaa-----gttctgagaactgagcctaaaccttacacatgcta----ggcaaaaatttttaccactgaactttatttccagccATttttgcttgtttaagtcatggtcttgctgtgtagcactggctggcctagtacttgctatataaccctggttggcctcaaattcattgtgatcctcctgccttaacctcctgagtagtagagtaagagtgttcactaccacacctgactGAAAGAT------------------AGCTATTACAGTGTTTTTTTGTTGTTGAtttttattttagagac---------agattttatgcaacccaggctagccttag--acc----------ctcttcat-----aggtgag-----atgaccctgaactctggattc--tcctgcttccaccttcta--------agatctagagctataagtttatgcATAG-TAT-ACAGTGTTGGTATAATAGGAAAATGA---------CTAACTTTCCATTGAGAGCTAATTAGTTAAGTAGATTAAATAATTAGATAAGTTATGGTTATATACTAGAATATTATATAATCACCTCAAATACTGATAGA-GATTCAGTATTAAAGTTTGGTCTGTAAATACCACACAGTTTATAGAAGAGAGTCCCGTCATCACAGGTTCACTAGCCTAATATCACAGTCTGTTTCTGTATCCTATTTTAGTGTTGTGGCAGATTAATGTTCTTTACCTGGTCAGAATCAGGT-GGTGCTGGCTTGCATCAGTTTGTCAAGTTCAGGAAGCATTAGCTGTCAGCTAGCTGGTGACATGTTTGATATGAAAAATGTATTTTTGTTACACATGTGGAATATATTGTCTCATTTTCTGAGCCAAGACTAATATTTTGTTTCCAAAGGAAAATTCGAACATTTTCCACGTTATTCTTTCTGGACAGTTGGAGGCTTTGTTCCAAAGTCAACATTCATAAGTTCTCCACTTTT-CTTATCAAATGTAAAGTAGTCCAGGTAGTTTTGAAAATA-TACTTTATGTGTTTGTTTAGCTTTTAAGTGACATCATAAAGTGCGATTTCTCCATTTTGGTTCAGTAAATGGTAGCAAACCCCATCCCATTCTTCCAAAGAAATCCTAATTTAGGTTAGTGTTGAGGCTTGATAAACCTGAGATTTTCCAGAGATGTGCTGTATTCTAAATTACCCAAGGCTTCC--CTCCGTTTTCATAGAAAATACACATCTATACATTTTTCCTATACTGAATCATTGATCGAACAAAGAC--TTTTTAAGCTTTTGTGTATTTCACaaaaatactatttttattatttattttaatGTTCAGTAGTTCTCTGTGCCCTTTTCAGAAAGATGAAAGTAGAGC-------TTGCATGTTTATTCTAATATACTTTCACTCAAACTC-ACATTGACATGCACTTAGATACATAAATGTTCATGTGTAAAAATGGTATGATTAATTATTTTCTTTATATGTTATGA---------AAATAGATCATAGACTATTTTTATTATATAGAAAGCTTCCAGATTTAATATACATTTCTCATA---TAAATGTGAGCTAGTAGCCCAGTTTA-------ATATGTTTAAAAACATGATATTGAAAGCTTTGTTTACTCCTTTAGCTCATTCTTCATGCGTTTTACATAAGATTATTTATGTTTACCATCTCATCCACTCTTTAAAATATTTTTCCCACAGTTATGCAGAAGGCATGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAGTTAAACAATGAGTAAGT----------TGGAAAATAAATTTGTTTTAAAGGAAACACAAGCAAA----TAATTTTGTATTTCCTTTTATCTGTTCATAAG--ATTCAGAAC----AGTCTCCATTCCTATCTT---GCACACTAGAGATAAGATTTGCGGTGTTCAATGACATCTGTATTTGCTTGTGGAAG------TGTAAAGTA-----------------------TCATATGGTTTTACATAAAGTATT-----------------------------------------------------TTAGAAGTTCTTTTTAAAATAAAGACAACTAATGAAGAATGCTAATAATACTTAGTAGTTAAATGGGTACTTAAGTATTTATTTTGT--TTTTCATTTAAATCATTCATTTAAAGCATTCATCTA-TCCTGGGAACTTATACTCAGCAATGGGCTTTGAGACATGA--AAGAGGATTCAAAAT----------------------------------------------TAGCAAG--------------------------------------------------------ATAGCTCTGTCA-------TTTTTTTTCATATTTACAGCATTTACTTTCATAGCGCTTTGTGTTATCTTTATATCTTAAGACAA-AAATGTAAA--CCTGACTC---TGTGTTTAAATGCCACTGATCAGTGCCAATTATCCTAAATAATATAGTATAATGTATTCGAAATA--------------------AATTTCACGTGGCATTATTCAAAGAATGCCACCTAGCTAATATTAATTGAGAGTTTTCCTTGAAGTTTTTttttttttttttttaaagatttatttatttattatatgtaagtacattgtagctgtcttcagacactccagaagagggaatcagatctcgttacagatggttgtgagccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctcttacccactgagccatctcaccagcccTCCTTGAAGTTTTTTATCATCAGTAAGAAGACC--CTATTGGGAGAGCAAAA-------GAATGGCAACTTTCCTCAGCTAGTGACT-GGCTGACAGGAATGTGACCTGTTGAGACTCTGAAATAGTCAGAACTTTTGTGAAGTAACCGCGGATTGCTC--AGTCAAGCAGAAATTACCTAA---ATATAAGAAAGCTCACCCCCTGGCTCTCTAGCTCACCCGCCGACTCTCTAGCTCAGTGGCATTCTTGAAGGCAAAATGAACATGCCAGCCCAGATACAGGTGTATCATGCC--AGGGAGCA--------------------GAACTGTGGTTGTTGATTTTTACTGATGTAATAGTTACTTTAAGCACCAGCTCAAAGGGCTTGTC-TTACTTCAGTTACCTTGAAACT--------CTCTGAATTGACCATCCTAAGA----------TGAAAATATTTAGAGGAAAATGTGTTACTAGCCATCTGTTTCTGATATAAAATATAAAACTAAACAAAAGGACAAGAAATTGGATAAAGCAGAACATGTATGaggaaagcttgggaaatgagac-tctagagaatagggccttgaaaagcttccgcacattcctgggaacctcaaagaccC
s HiC_scaffold_1 115435465 3432 - 233722169 ACAATACTTTTAGTATGCTCATGTTTTGACTATCATCCATTGCATAAGatcaggtgtggaattttccatttatggtttcatgttttggattttagattatttaaaattttggattttgatGACT--CTTGGCTT-----GTATAGGTT---------------TTTTTCAAGTCAGATTTGCAGTCCAA----------CTACCAAGCAAAGTTATGAACACTGAGCACATTTTTTCTTCAAACTTTGCAGTTTGAGTAGTAAA---ATTTTGAGTTTTGGAGCCATTCAGCAATCAAAATATCACTGTATTCGGTCAGCTAAAGATATTGAAAGTGTCAT---CATCTTGCTATTTTACTTTTGGggtcctggggattaaaccctGGCActgtacactgagctacatcctta---gtgctgtgggggaaaaaatattt-------------------------------ttttttgagataggttcttggTTTGTACtataggctgaccttgaactcactgtatagcccaggctagcctcaaacttgctgctatctgcctgcc--aa------gtgcag-atattataggtgtgtgccactacccTTGGTTAAAACTTTGTGCATTTGGaactctaagtcactaaattgcctagttag----gacttgaacttgagatcctcttccctcagccttttttttcccccctttggtactggggatcaaattcacagctctgtatttgccaggcaagcgcttatgccactgagctatatccccagccccacctcagcctcttaCAGTTCAGGAAttcagacatgtaccaccatgctcagctatcACAGTTTTTATATTATCAAAGCATTGGATATAGCTTTAGTTGTCCATCCAAAGGGaattggttaaataaatta----------tgatatataCTAATAAACTAGACTATTTTA--ACCATATAAGATGTTGGTAAAAGATTCATTGTTAAAATTTGGCTTATAAATATCATTAAACTTTTGGAAAAGATCCTCATGTTCAAAAAT-CACAAGTTTaat-tctgaacttttttttatGTACTATTTTAGTGTTCCAGCAGAACGATGTACTTTACCTGGTCAGTATCAGATTGGTGCTGACTTGCATCAGTTTGTCAAGCTCAGGAAGCATTAGCTGTCAGCTAGCTGGTGACATATTTGATAtgacaaatgtatttttattataca-gtGAAATATATTGTCTCCTTTTTTAAGCCAAGACTAATATTTTGTTTCCAAAGGAAAACTCAAGCATTTTCCACATTATTCTCTCTGGACAGTCATGGGCTTTGTTCCAAAATCAACACTTATACGTTCCCTTTTTTTCCTTATCAAACTTAAAATAGACCAGATAGTTTCATGATTCTTATTTTACTTGTTTGGTTAACTTTTAAGAGATGTTGCTTAATGTTGTATTTTCATGTTGGTACTGTAAGTGGTAGCACAACTAA------TATTCCAGAAAAATCCT-CTTCAGGCTTTTGTTGAATCTCAGTAGAGCTAATGTTTTCCAGAGGTATACTATATTCTAAATTAATTAAATCTGTCTGCTTGCTTTTCATATAAAATGCAGATCCATACATTCTTCCTCGAGTGAA-CATTGATTAGACAGACTTTGTTTTTAAGTTTGTATATAAC-----------------------------------TTTAGCAATTCCATAGAATCTTTTCAGGAAGATAAAAGTAGAACTGTAGTATTTCATATTGATTATAATGTAATGTTACTCACCCTTAATTTTAACATGCATTTAGATGTATAAATGTACTTGTATAGTAATGATGTAATTAACT------TAAATAACTGATGGTAttcacttaaataaaaaaaagaa------tattatctgtaaaacttacaaatttaatgtaaatttttcaCAAGGTTAGTGTGAGTTAGTAAcctaatttattgttttatgtgtttaagAACACGgtgtttaaaactttatttactcCCTTAGCTCATTCTTCATACATTTTGCATAAGATTACTTATGTTTACCATCTCATtcactttttgaaatatttttcctacaGTTATGCAGAAGGCATGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATGagtaagttttaaatatatgaaaaataagtttGCTTTAAA-TCAACCCAGGCTAACTgttgtttctacattttcttttgtcGTTTCCTAAGTCACTTGGAGCCAttagtat-catttttttcttttagaattgtaGAGATAAAATTTGCAGTGTTCATTGAATTTCGCTTTTGCAACTGTAAGTTTATATGTTAAGTAGAAATTaggtattcttttttattttattttattttataccaggaattgaactcagcaccttgaccttgccagacaggcaccctaagctatatccccaaccttaGGGATTCCTTTTAAGCTGGAGAATACTTATGGAGAA--ATGATAATACTTAATTGTTAAAAGGATACTGAAATACTTATCCTACTGTTTTAATTTTGCTTG-TCATTTAAAGCATTCATTGAGTCCTATAAACCT--------TAGTGGTTACTGAAGTTGGAATAAGAGGATTCAAAATAAGTAAACCAgagccagggttatagctcagcagcacaacacctgcctagcaagtgcaagatcctgagtttaattcctggtacaaaaaaaaaaaaaaaaaaaaggaaactatagcTTTGTCAACTTATTTGCTATTTCATattctaagaatttatttt--tagctCTTTGTATCAgctttatattttgagaaaataaatgtaaaattatgaaTCAATAGTATTTCAATGGGAcagattaa------------taaata--ttaatctaATGTAtactaaataaatgcaaagagtaAAAGTATAATCCCAATTGGGATCATTCAAGGAGTGCTTCCCAGATATTGTGAATT--TAGTTTGCCCTGAAACCCTT------------------------------------AATAGATACA---------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCTTCATTAAGAAGACCTTCCAAAAGTGGAACAAAAATGGGAGGAACAGCAAA-TTCCAAAACAAGTGAATAAACCGACAAGA---------GCTGTCATAATCACATAGTCAAAAGTT---TACAATAACC-TGGTTAGCTCTTAATTAGAGAAAAATTACTGAGTTTCTGTAAGTATTTTTAACTTA-----CTCTAGCTCCATCCTTCACTGCCTAGTTCAGTGGAAGCCTTGA----CAATTGTGCA---CATTCTAAATGTAAGTTTCTAGTGCTGGAGGGAGTAAAATGGACCTTATTCTCAAGGAACTGTGGTT----ATTTTGACCCGTGAGGTGGCTACCTGAAAGGCCAGCTCAAGGAGCTTGCCTTTATTTCAACTAACTTGAACTTGTCCCCAGCACTGAATTTACTCTACTTGGGGAAcatttattgaaaacatttatAGGCAAATA---TATTAGCCA-CTGCTGCTG-CCTATAACAAGAGATCATAGCTatggaaaaaaaa-tagacaaacca-------------GAAAGCTT-----ATGTGACATTTAGAGGG-AAGACTTTGAAAAGCTCCCATATGTTCTTGGGACTCTCAGAGGCTC

a score=107184
s chr3           104888488 8277 + 160039680 [encoded data, 9201 characters]
s HiC_scaffold_1 115443750 7264 - 233722169 [encoded data, 9201 characters]

a score=5305
s chr3           104891518 155 + 160039680 AAAATTGGGAAGAATAAGAGAAGCAGTGAAAATAATGAGAGATGTAAGTAAATTTGGTAACTGAACCATTATTTCTATTCACAAACAAAAAATATCA----GTTATTTTAAT--GCAGAATCACtttttattttattt-taaaataaCTTGtttatttttat
s HiC_scaffold_1 115446563 149 - 233722169 AAAATTAGGAAGAATAAGAGAAGCAGTGAAAATTATGAGAGATGTAAGTAAACTTGATAA---AAGTATTatattttttcct---ccaaaaatcttaaaatgtagTTTAAATTGGCAG-------TTTTGTTAAATTTGCAATTTTAATTGGTAATTTTtat

a score=45348
s chr3           104905822 2278 + 160039680 caCTACTCTGCTTCGGATTCATTATCTCATTTTGTTTGATCTGTTCCTTCATGTACTCTTTCCACATGACTATTATT----------CTGTGCTTAC-GCTTTACCACGTAAGAG-CTTGGGGATTGCTTGGAATAAGGGAC--AAAGTAAACATAGTAATGAGAGGGTTAACAGTTAACCAATTTCAACTAGTTAACACTCTGAGGACAATTTATTTGTGTGCTACTGGAGAAGCCCTTGGGGTTAGAGAGAAGTAGAACATTTGAGAAGGTAGGAATGACGGTGTCAaggcaggaggatcttgaattagaggcttgtctgagctataaatggacaccctgccccaaaaccaaggcaggaggatcttgaattagaggcttgtctga--------gctataaatggacaccc---tgccccaaaacaacaTATGGCTGAGGATATTCCTCACTCATTCGAGTGCCTAGCAGGAATATACTCTTAGGGAAAACTGTGCCTGTGACGGCCCATGCCTGCAATCTTGGTGATTGCCTTGATGAATCAGACCTTTCTTTATTAAAGTATACTTTGAAATGCACTgatc---accaattgaaaggtcatccatagctacatagcaagtttgagcggccagtctgggataaaacctcgtctcaaaaagcaaataaa-------taataaaaataaaacaaatataaaatctttaataCATTTCTGTATTCTGGGCACATATCTAATAATATTACATCTACAGCTTTTAAAAGTTATTTTCCCATATAGCTGTTTTTTAGAATTATCTTTCCAAGAAAGCAGACCACATCTGAAATTTTCTGTAAGTACAAGAGAAGTTTTAAAAATATATTTATACATAGAAAGTAAATCCTTTCTGagtctggcatggtggtatattcctgtaatctcagcacacagaaggcagaggaactggttatctgttacttctagacagtcagagctacatggtaaaactcaatctcaaaaaagtcaaaaACAAAAGAACAAAGTAAAATCCTTGGTGGTTGAACAGAAATTGAATCCTGTATGATGCTCTGAGTTTCATGCAATGAGATGGTTATACCTTTAGTTTGTATTTTGTTGGCTAAAT--ATATATTAGCAGCATATATAAAACAAGACAAAGAGGCATGGAGTTGAGATTCTG----------------------GGAAGTGGTGTTGAATTCTACTGTCCAAATTTACAGCACAGTGAGACGGTTGTCTTTCC-TTATAGTGCTGTGTGGCCTAAGTGGGAGTGGCAGGCTATGGAATCTTATCATTGGCACTGTAGGGTGATGTAGAAAGGAATTTTCCAA---------GTTTGCTCCA----------------------------GCATGCCCTCCATAGCCTCCCTTCCCTTTCTCTAC------------------------TCCCAAGAATGGTAGGTATTATGTCTTGTTTGTTTGTTTCTTAATTCACATAGCAATTCTGTTTACTTTCTCTCTGGGAATTGTGTTCAGTCTCCCC-AGTACATG--CTCATAGACT----GCATTCAGCCTGCCTGTCTAATCTTATAGAATGTGCACTGAGAACACTTAATTGCAGAGATAAATTGGTTCTTTGTGTGCATGACTGATCAAGAGCAAAGCACCTTAATTTTAGATGTCTTCAGAGAGATTTTTCTTTAACCTCTGCCTTTAAGAGGAAGATTATAAAGCATTATCATTACTtcaggtcagaattatattgcttttggtcaaaagctgttgtaagatttacaaactaatagaaaagagtaatctaaggataaattataaagatcaaagcagttgaaaattaaagtgaattttagtgtaagcttaggtatggttttagaCTC-TTAAAGAAACCATCCATGCAGAAAGGCCCTGGGTTCGATCCCCAAGCACTAAAAAGAGGGGGAGAAGGACAGAGAGCAAGCGCCTGACCATACGTCA----------TCATGCCTGT------AATTATAGCTTTCAGAGTGGCTGTAACTTTGATATGTGTAGTGAAAAGTAAGGAACTAGAG------------------ATATTAAGAAACTAGATTGATGTCAGGCATTTCTCTCATTTATTCCCTACACGACAGTCGGGTTATTCTGAGGTCATACAGGAATGCCAGCAGCACATACTGGATGTTGGCTTTGGTTCCTGTCCAGCTATA----TTTTATTTGTTGATAATTTTCAAATCTATATCTTTTAATGCTG--TTTTGCTTCTCATTTTCAGACTT------------------GAATTTTTCATCCTATAGAAGTATTTCAGATAT-----TAGGTTTCAAACTAAATTTTTAAAATGTATTTTAAAGTATTTTTTC-------CTTCT-TATTTCTTCATTTTGATTTATGGCTTCATTATCCCTTTCATTCATT
s HiC_scaffold_1 115464066 2104 - 233722169 CATTACTTTATTTTGTTACCATTTTCTCATCCTGTTTGAGCTGTTTCAATATGTACTCTTGCCTTgtgaatattattaatattattttagtatttatagcCTTAAGATGCATCAGGTTTGAGAATTCCTTGTTGAAATAAACTAAAGGTGAAGATATT---GAGATAGCTAGGAATTAactaatttgaaatatttaaccCTCTGAGGactattgatttattta----------------------------------------ttgagacag----------ggtctcattgta---------------------tagtgcagacta--------------gcctcaaactcgtGGCAG-----TCCTGCCTCA----CTCTTCtgattgctaggattacaagtgtgcaccaccgtgccttgCAAGAACA-----------ATTTTTTTAAGTCA-----GTGTTTC-----AATATATTGTCCAGGATA-----GTCTAGAAC------TCACTacataccccaggctggcct--------caaatcctcctccttcagc-----ttcctgagtgctaagattggTACAGGacgtaccatcatgcctggctctgcAGACAATGTTTTTATGCCTTGTAGAAGAAACCCTGgtggcataaaaaaaaaaaaagtagaatattaacaacaaaacaacaaaaacttgcTTAGTAAATCCCTGTTATCTTGAGACACAGTTAGGAATATGATATCTGTAGCTTTCAAAAGTTATTTTAA-GTAAGACTATTTTT-AGTGTTATATTGCCAAGAAAAGAGATCATGCCTGGAAACTTTTATAAATGctaggagaatttttaaaataaattgataca--------------------------------------------------------------------------------------------------------ATACATAG-------------------------------------AAAGTAAAATCTATCGTGGTTGGCCAGAAATCAAAACCTGTATGGTGTTATGAGTTTTA-GCAA-------GCCAT----------TGCATTTTATTGGCTAAACTACCATATCAGTGGTAGTTCT-----------------CATTGAATTAAGATTCTGAGTATTATAGCAGGAGAAAAGGGGAAGTGTCATTGAGGTCTGTGATTCCGACTTTGAGCACAA----GCCTTTGCCTTTCCATTATGTTGCACCATGACCTAAGTAGAAAAGTTGAGATAAAAAATGCT-TCTTTTGAGGTGTGGGTCTATACAAAGATGTAAGTACCGCACACTAACCGATTGCGCCACTGGAGCTCTTATACAAAGATATAGAAAGAAGTTTTCCTGTGgcctcccttccttttcccttccgtgcaaagtcacttttcttttgttcctgaGACTGTTAGATACTAT----TATACCTTCCTTATTTTATTCACATAGCAGTTTTGTTTGCTT-CTGTGTGGGAACTGTCTT-AGTCTCCCCTAATACATATCCACATGGACTCTTTGCATTCGGCCTGCCTGTCCAATCTCATAGAATGTGCACTGAGAACACT-AATTGCAGAGATAAATTGGTTCTTTGTGTGCATGACTGATCAAGAGCAAAGTACCTTAATTTCAGATGTCTTCAGAGAGATTTTTCTTTAACCTTTGCTTTTATGAGGAAGATTATAAAGCATTATCATTACTTCAGGTCAGAATTATATTGCTTTTGGTCAAAAGCTGTTGTAAGATTTAC-----------AAAAAGTAAtctaagaa-aaattataaagatcaaagccatTCAAAATTAAAGTGAATTTGAATGTAAGCATAGGTATGGTTTAAGAGTCATGAAAGAAACCAtccatgcacaaa-gccctgggttcaatccct-ggcactacaaaaaagagaa-------agagatagaccATATGACCgtgcattatttaaaaattttaagtcttttttgaaAATTACGGCTTCCCgagcatcttttatttttatatttgcagTAAAGAGCAAGGGACTAAAGTAGTTCATTGAGTGCAGTATGTTGA-ACATTAGTTTTGACCTAAGCAATT-TCTGATTTATTGCATGTATAACAATAGGATTGGTCAGAAATAATAGGGAATATCTTGCAGTACATGTTAGATACCAGCTTT------TTATCagtaataaaacttttatttgctGGTAGTTT---AAC---TGTCTTTTAcctgtggatttcttttttcatgtgtaGACCTATATTTCTTTTAGTTGAGGAAATCCTCACCCACAATAAGAACTTTAGACATTTTAATGTGCctcaaattgaatttttaaattttat-------tattttttctgcacTGCTTctccatttatatattttgaaatagagcttcattattctctttttttatt

a score=38793
s chr3           104913852 1842 + 160039680 TATGAGTTTGAAAACATTTT-GTTGAATATATCAGATCACATCA--------GTTCATTTCAGTTTTAGGTAGTAGAATGTGCTGGATACTGTAGGAAAGTATGAAAAATAGAGTTTCTCTTGTGCATTAACTTACAGCCTACACTGCATAGCAGAAATTCCTGAACAGCCATTTCTGGAGATCATAAAATAAGTATTGTAATAGTGTTATATCTTATTTAAGTGCATGTTTGCAAAGCCTGGCACACGTTGAGGACATGATCTACATTGTGATGTCTGCCAGGCCCATTGAGTACATTAAAAACAAGATTTATTGatttttattttatgagtgtttttcctgtatggaaatatgtgcatcatatgcagtcctgatatccacaaagactaaaaaaaaacctcggaatatcaggaagtgaagttacagatggttgtgaactaccatgtgggtgctgggactcaaaccccagacctttgaaaaagc--agtaggtgctttcacacctgggctaactctctagcaccAGGTACATTTTT-------------TTCCCTTATATTTTAGGAGCCAAATTTAATTT--------GGTAGAAACTGAAAAAAATGTTTTGCTTTAAAGTCAAATTGTAAAGGATATTTAGGCCGAGGATTTAGCTCAGTGGTAAGAGTTATTCTGCAACATGCACACACACACATGTGCTCTAGGAAAAGTAAAAAGGATTAAAGGATTTTTGTTGGTGGGTATAACATGATAATAAAACATGACCAAAAGGAAAGGTTCAGTGTATCACTTTAATTCATTGCTTGtttggtgacactgggtattgattctatggctttgtgtgtggtaggcaagcaccactgagctaaatccccagtcAAGGGAAATTTTTATGAATAATTAACTTGAGCCAATATTGACCCCCCCAAACCAAACCAAAATACAAATCAACTTTTAAAATATAAATTTCTGAATTATAATTTTCTATTAAGTGTGTCATATTTATTTATGTACTATGCATTGACACTGAGAATAGTTGACAGTGAAAATATAGGTGTATAGTTGCTGCTCAAAAAA-TGTTTCCTGGACATATTAAATTGATATAATAT-------------TAACCAAATATCTTTGTCTATATATACT-------------CACACTAAATA----CCATGTT----GT--AAACTTTGT----TTAAAACTT-TCA-----CATTCTAAAT------------------GAAA--------------------AGAGAACTGATTTAAGAATTAAACAGTTCTCCTCTGGAGCTGTGAC-CTAGTCTTATGATGCCATCTCCCCCCGTGATT---ACACTGTCAGTGGTTCCTACTGAAGAAGCTCTTAATGCACTCGTCAGGAGCAGAAGGAATCGTGTCAGAGGTCAGCCAGTGGAGTCCATTTTCCCACAGCTGCCTGGTGTGAGTGATCTTTTACTGTGTTTCAAAAAAAAAAAATGGGCCAGGATTAGAGAGGATTAGAAAGAATATTACCCTCCTGAATACAGGCCCAGGGCACTGCAG--AGAGAACCCAGCCAGGCAGCAAATGGGCTTTCCCTGGCCAGGACACAACCTCTGCTGCATTCCTTTTAAGAAACTGAATGGGAAACGTTAAGTCCCCAAACTGGATTAGTAAATAATCTCATAGTTTGTGACATCTGCTAAAATACATTGATGAGCAGACTGCATTCTTACACCTGAGG-----AGCCAGAAGCATCAAGAGTCTGAGTAATTAAAGGTGGGCAGGAAGCTCAGTAATTCCTGGAGAAGTGCACTTCATAAAC---GAAGAAAATATCAGTCTAGGTGCATTAGTGCAACCAGGATGTAATATCCATTACTTAAGGCTTAAGATTGGAAATCCTTACAACTTTTTTAAGA-----GTCTTTCTAGATCTTATTGCTTATAAGAAAGCTTAAAA
s HiC_scaffold_1 115467968 1483 - 233722169 TATGAGTTCAAAGACATTTTAGCTGTGTGTATCAGATCAACTCAATAAGCATGTTAAAGCCTACTTTGAGTTGAAATATATGCTGGATGCTATAGTAGAATATGAAGGGTATGCTTTCTATTATGCAGTAACCAGTGGCTTGTACTGAGTGGCAGAAAGTCCTGAATAGCAGTtcatgaaggagaaaaaataagta-----ataatcaTATatcttacttta-----------------------------------------------------------------------------------aatatttat----------------------------gtatg----tatgtgtg-cacgtGCATACTAGATATC---AAAG--------------------------------------------------------------------------------CCAGGGCTTTGTACATGTTGAGTACATGCTTACCCACTGCCAATTACCCCACTccattaaatacatttttcttaaacttaaaattttcttatattttagaagccagattttatttcagtatcaaatagaaactgaaaaaa-tactttagtgtaaattaaaattgaaaaggacATTT----------------------------------------------------------------------------------------------GCTGATAGGAAAGatattatagtaaaa------------gaaagaTGTAG------------------------------------------------------------------agggaag-----------------------------atatttttaaaaataattaactag----------------------------TAAAATA---------TTGTAAAACATAAAATCCTGAATTATATT----------GTCTGTCACATGTTTATATACCCT-TGCATTGACATTTGGattataaaacagtgaaaatatagTTATGCAGTAGCTGTTCAAAAAAGTGTTTTC------------ACTgatattttctaagttttattgAGTAACTGAATTTCTTTGTTTACATTTGCTAAATGATTACCAATATATTAAATAATTCCCATGTTTGAAGTTAAAGCTCCGTGATTCTGAAACTCAtcaaaaatcattttgaattttttctcttgtatCTGTGAAATAAAGCtaaattttaatatgaaacaTTTGACTTAGGAAT-AAagaattttcttctgaaaatgagATGCTCTTTTTATGAGGGTG-ATTCCACTGTGATTGCCACATTCACTTTGCTACCTAGTGAAGAAGCTTTTAGTGTACTTGCAAAGAACATAAGGAGTCATGTCAGAGGTCAGCTATTTGAGTCCATTTTCCCATAGCTGCCTTGTATGAGTGATCTTTTACTGTGTTTCAAAAAA------TGGGCAAGGATTAGAGAGGATTAGAAAGAATATTACTCTCCTGAACATAGGCCCTAGGCACTAAGGGAAGAGAACCCAACCAGGCAGCAAATGGGTTTTGCTTGACCAGGACACAACCTCTGCTGCATTCCTTT-AAGAAACTGAATGGGAAATGTTAAGTCCCCAAAGTGGATTAGTAAATAATCTCATAGTTTGTGACATCTGCTAAAATAAATCGATGAGCAGACTACATTCTAACACTTTAAGAACAAAGCTGGAGACATCAAGAGTAAGAGTAATTAAAGATGGGCATTAAGCTCAGTAATGGTTGGAGAG-------tcataaataaagaagaaaaaattattttagatgtaTTAATATGATGGGAACA----------TACCTAaggcttaaatttttaaaccactacaaactttttattatttatttttttctaaatc-catt--ttattagaaagataaaaa

a score=6294
s chr3           104915854 118 + 160039680 tatatCCAAAATGTGTTTATTGGGA-AGGTTCCCACTCATCTTCAATCAGGG-GCTTTCAGTGCTGCTTCCTCCTGAAGGAGCCTCCTTCTGTCAGCCTTGCTTTTCCACCTGTAGGATG
s HiC_scaffold_1 179350420 119 - 233722169 taaatccaatgtGTGTT-ATTGGGATGGGTTCTCATTTATCTTGAGTCAAGGTACTATTTGTGCTGCATCCTCCTGAAGGAACATCCTTCTGTGAGCCTTGTTTTTCCTCCTGTAGGCTG

a score=27717
s chr3           104918903 881 + 160039680 TGGTTTTTTTTAGTGTTTGAGTATA-----CTGTATTTAGT------GAATATAATTGACTCCCTT-ACAATTAAGTGTCCCACC-ATAAAATGGGAATAAGAGAAAACAGAATTGA----TGACACACAGTATTTTCAAGAAACTTTCTTGTGTGATTTTATACTTAATTGTTTCTTGAAAAGTA----TCTGCTCTCACATTATCTCTG-AGTTTCACTTTCTGTTT-GTGTTT-GCAAGGCCATATAAGCTATTTGTTACTTTGTTTTTACCTGTAGCACAATTCTTACTTAGAA---------------GGTTTGTAAGTATTACAAGTACTTTA--AACAAATCTTTAGTTGGAACTGCATGTCATTTTATCAAGTTGAATGTTTATGTGTTTAAACCAATTTG-----TAACATTTGAGTAAATGTTTT-GTTCATGTTTCCTCTTAACACAATTTTAATTTCTT--------GGCATGGATGTGTTGTT-TTGCAGTACTTACTAGAGATGAAAAGTTTAATCTTACCTCCAGAACACATTCTGAAGCGAGGAGATAGCGAAGCAATTGCCTATGCTTTCTTTCATCTACAGCACTGGAAACGAATAGAAGGTGCTCTGAATCTCCTGCAGTGTACATGGGAAGGCAGTAAGTATTCCTTGCCACATGTAATGCTGACCTCTGTCTTAATTCTCACCGTATCCATATGCAGTCTTTTAAAATGAGATTGTGCGGCTTCC----------------------------AATGATCTTTGTGGGATTATAT----TTTGTAGATGAAATAAA---GTAATGTA----TATTGATGTTATACTTAGGAAAAGCAGAATAAAGAGCTGTATAAGTATTTGC------------TAAGTTGAATGTTTGTAATGATA-AAAATGAAAATGTATTCCTTTTAGTTTATAAACTTTTCAAGT-----GTGTTTATGTTTGTTATTGTTTGTGGG
s HiC_scaffold_1 115471072 980 - 233722169 tggtatTTTCTAACA----AGCATAATGCTTTGTATTTAGTAAGTTTgagtttatttgaatttttccacaattaaatttttcatctataaaacagaaatgaaagaacaaagaattgaatgttGCCACAAAGTATTATTCCAAAATGGTATTATAAG--tttacatttaattcttttttggaaaataaatatttgctctcAAATTATTTCTTCAGCTTAAGTCTCCATTTTGTATTTAGTAAGGTCACATAGGCCATTTATCGCCATATTTTTACCTAAGGAATTATTGTTTTTTAGAATTTGCAGTAAAAAAAAGTTTGTGTGTAT---AAGCATTTTATACACAAGTTTTCAAAAGATCCATCATGTTATTTGAACTATTTTAATGTATATGATTTTTAATCACCTTGACTATTAGCATT---GTGAATGTTTTTGTAGATATTTGAACTAAGCAAAATTTAATTCTTCTCtgttgtatgtatgtatatgttatTCTTGCAGTATTTACTAGAAATGAAAAGTTTGATTTTACCACCAGAACACATTCTGAAACGCGGAGATAGTGAAGCAGTTGCCTATGCTTTCTTTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAACCTGTTGCAGTGTACATGGGAAGGCAGTAAGTATTCTTTTCTAATCGTGACACTAATA-ATCTCTGACCATTCACAGCATTAAAGGGCCATCTTTTTAAAGGAGATTGTCTGAGTTTTTATAAAGATTTGTTTAGATTGGTTTTGAAGTGAACTTAGTGGCATTATAGTAGATTTATTGCTAAAAGAAATAgttaatatatttgtattaatGCTACA-TCAGGAAGAGCAGACTGAGAAACTGTCATAGTATTTTCCGTTTATTCATTTAAGTTAAATAcatgtaagaaaagaaaatgaaaagataggcCCTTTGGCttgttagctttttatttttttattttttatttttatttttggtagtggg

a score=18638
s chr3           104921858 508 + 160039680 AAGATTCCTATAGGAAGCAGGATTTATCCTTGTGGAGTTACATCCATGACTGTGATGAGGAGGCTGAGGTGGAGAAGGACCCAGCCAGTTACATTGTAGCAGTCTTTCTTTCCCTTCAGCCTC---------AGACGGAACCACTTACTGTTCTTACTAGATCTAGGCTTTCTCTGTGCGTTCTTCTCCTGTGTGCTCTTCTGTTCACTTTATTTC----------TCCAGGAAAAGATAA---------GATACTATGTGAAAAAAAGTTATAAAATGTCTGCAGAATAGGTTTGATTTATAGCATAG-ATGATAAATGAGATAAAATTGAATGCTAATGTGCTTTTTTTTCTCAGCTTTTAGAATGATTCCATACCCATTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAGACTGCTGATAGAGAGCTATTGCCTAGTAAGTAAATATTGCCATTTTCTTCAGCTTACAAGTAATTATTTGGATTATTTTTAGATTGGTTTCTGTGTTAGTCACCTTTTTGTT
s HiC_scaffold_1 115475084 495 - 233722169 AAGATTTCTTTAAGAGGCAAAGTTTATAAATGCTGAGTTAGGTCTATGACTGTAGTAAGGAGACTGTGGCAAAGAATAATACAA-----TAAATCTTACCA-CCTACCACTGCCTTTAGTTTTGTTCTAGGTAAACTAAATCATTGACTGTTCTG--TAAAT--AGTCTT---------ATTTTCTCCTTATTAattcttttgtttactttctttcATCTAAAAtgtctaagaaaacaaaacactgtgaTAACACTGTGATAATAAACGCTGTgatatatcttcaaaatagctttgaTCTACAGTATAggatggaaaatgagataatgtcaac-----atatacatttttttctcagcTTTTAGAATGATTCCTTATCCATTAGAGAAAGGACATCTATTTTACCCTTATCCCAGCTGCACAGAAGCTGCTGATAGAGAGCTGTTACCCAGTAagtaaatacttcatttttcttaaactta----TAATTGTTTAGAT--------------TTTCTGTATTAATCACGTTtttatt

a score=83153
s chr3           104923836 2949 + 160039680 AGAACTAGATAGCCTCGAAACTCAAGGG--GAAGAAACTTCCCAGTGAGGAGA---------------TACTGAG---AATCTACTGACTTTGGCAATTAGGAGCTCATAAGGAAGAGAAATTACATTTGCCTTT-TAGGGTGGGATTAGCTATTATTTTCCCTAGTTATTGTTTTTCCACTTTAAAAT--AAACAGATTTTAAGGCAAAGAAAATCCATTTTTAAATCAATTAATGTAAAAATGTGTTATACctgggcatggtagcacatgctgtaatcctaccctctgggaggctggggaatgagggctttgagctgagaccagactgggcatcatatagcaaggccttgtctcaaaaaatacaaTGAAATAACAACAACAACAAGTTTTATTGTAGTAGGACAATACACTTATACTAAAAGAATGCCTTTCTTTATATTTT-------ATTATTAAAGGCCAGCTTTGCATATTAATATTTCTTATGTCAGAATCAGATGCTGTAAAATCAGACAGGATATTTTGTAATACAGATTTCTAAATTTTAATTTATTtttatttattttttgtgtgtatgggtgttggcttgcatgtatgttttcataaatgcctgatacccaaagaggccagaagaggatatcagatccctggaactggagtcccagacagttatgggctgccatgtgggtgctgggaattgaacctgggtcctctggaagagtaacattgctttttagctcctgagctatctctccagctccCAGTTAGGTTTTTTGTTTGTTTGTTTTTGTTTTTTGACGAGCTATCATTAAGTCTTAACTCCGTACAGGATGCAAGGTCCAGAACATAGACATAGAGGGATAAGCTGGAGAGTTTTATTTGATTGTAATATATGTTCTCACAGTTTATTTTTCTGTTTTTGACTGTGGTGAAGTGAACAAAATTTTAATAATGTGGAGTTCTAATACCCAGGAGTACTTAATGTTTTTGTTTTTAATTTCTTTCAACCTTGATATGACTTAAAGCTTCCTGGAATTTGCTTATAGACTCATAAGTTGAGACTTGAACTACTCCCCCTAGTTCATATAGCTGTTTTGTCATCTTTTATGTCTCCTGATAAATTTTTCTTTACAAG-CCAGTGATGAAATTTGAACTTTTGTTCCAAAGGAGTGTTTCTGTACTAGTCAGTCATCCATTACACTGATGTATTAGCCAAACATTGACTGACAAGTGAATCTACAGAAACCAGTCCAAAAAGAAATAATTAGGTCTTTCCTACAATATAAAAGTCTCATATTTTAGGAAGTTTTCTTATTAAAGCTGTGGAGTCTTCTATCTTATAATGTGAAAATAATACTATCTGTCT--TCAAGTTATTTCAACAA-TTAAATGAGAACTTTA--------AAAAAAACATAAAGTGCTTTAGGGTTTAACTAATATTAATTTTACTGTCTTATTCTTTGCCTTCTGAAATACCAGAGTTTGTTTCTCTTTGTTTCCTGGAAGAAGTCAACCTGTCGTGGGTGAGGGGCCGGGCAGAAGGG--------------------------------------ATTGCTGGTTCTCT---------------GGGTGCTATAA---------------GAGCAGCATTGACAG---------TTTCTAGTGCTTTACTG-----------------------------------------------------------------------------------TTTACAAAGTTCAGTCCTATTGTGCTTTTACATGTAATATGGCTCAGTGCTCTCGAAATCGTCTGAATTTTTAAAATGCGTTTAGTTTTTGCTATATGCTTTCTGaatataacataaaatatatttaaaaatattGTAGCTATTGAAGAACACTTAGGTATAACCTTCTCTGttaattattatattttttaaaaaGTGAAATTTATAGCTGCCCTTGGTTCAGCATGGAATTAGTCATTTCTTACTGCTACAGGCTATTAC-----ATCAGGAATTCCGGGGTCGGTGTCCT------AGCAGTCAACTTTCTG-ACTAATGAAGTCTTCATATAGCGCTCAGtttaaaagaaatttattgagcacctactgtgcattgggcactctaaaaggctttgcTCCAGATTATTGTTATACAAATACTTTGAATACTATATATGAGCT-TCAGTAAAATTGGTAATGAGACTCTCAAACACTAAAAAAAATAATACTTAGGTGTATAAATGTGATAAAATAAGCCAAAGCACTTCATTTATT--------------CGTTGGTTTTCTATTCTGTTTTCATAACACTTGGTGAAGTGTCATGCATAGAACATTGCAGTAACTGGGTAAAATTATTAAGCAGTAATTCTGGGAAA-TCCTCCAAGACATGTCTATCTCTTTATCTCTACACTACTTGCTGAGCTTTCAAAGAACAAAAATTAATAACAACTCACATTA-AATAAGTACTTACACTATTCATCATAACAACACCATAGCAACTTCT-ACAGAGTTTAgt-------------ccaca-gctaataagggacag-gctctttttcaaaaccacctcagcatgactttatagtccatgttctttcccacgatgccatcctattccCAGACCCCTGTACAGCCATCTGACTATGCAGATA------------------AAGTAA---ATAGCTTGTTTTTTTTAGCTTTGCT-------------CTTATTCTTTTTGACCATGTTCTTAATTTTC-AAAGCTAGATTTAATTTTACAACATTAAGATTGGTTTA--------TGCAGAAGTAACCTCCTTCTTGCCTCCTTTCCTT-GCAGCTTTCCATCACGTCTCTGTCTATCCAAAGAAGGAGCTTCCTTTTTTCATCCACTTTACAGCAGGACTGTGCTCCTCTACCGCAATGCTAGCGTTTCTCACTCACCAGTTTCCTGAAGTCATGGGTGTTTTTGCTAAAGCTGTGAGTATGATCTCCAGGACTTGTGTGGAGTATTTATAAACCAGCGCAGGAAAGCATCTCTCATCTGCCAGTGCTAACCCGCACGAGCAGCGGAAGACACTTGTAGACGGCAAGAGCTGATGTAAAGCTTCTACCATGACTGTGTCAAACACAA-GCTCTGGTGATGTGAA-----CTTCTATCGCTTAAACGTTT-AAGAGTACAATGCTATAACATTATAA
s HiC_scaffold_1 115478260 2775 - 233722169 AGAACTAGATATTCTAGAAACTAAAAGGAGGAAGAAATTTCCAAGTGAGGAGTATCTAGGAAGGCAGTTACTGAGCAAAATCTATTGACTTTGGCAATTAGGAGATCATTAGTGAGaga--tttcattttccttcctaCAGTGAGGGTGG-TAGTATTtgttcttgttattatttttccatttaaaaaagaaaaaatattttaaaacaaaggaa--------------------------------------------------------------------------------------------------------------------------------caaGTCTTTAATT-----------ATAGAACATCAATATGCAAAAGTCT------GTTAGGCTAATACATTTAGACTAAAATAATGCCCCCTttgtaattattataaaaattgtcTAAGGCCAACTTTGTATATTAATATGACTAAATTAAGAGTAA-----------------------------------------------------------------------------------------------------TTTTCATAAATCAGTCATATGCTACAAGACCAGatagg-----------------------------------------------------------------------------------------------------------------------------------aggtttttttttattttgttttggt--------aagCCTTTATTAATTCC-AACTACATATAGAATGCAAACTCCAGGAGGTTGCAGTACAAGGGTGAGCTAGAGGATTTCGTTTGATTATAGTATATGGTGTTAGAAtat-ttttcctatctttgccTGTG-TagaatgaacaaaaatttaaGGATGCAGAGTTCTAGTATCCAGgagtactt---ttttttgtttttaattcctt-caACCTTGATCTGCCTTA----------GAATTTGCTTATGGAC--ATAAGTTCAGACTTGAACT-CTTCCCCTAGTTCACACGGCTATTTAGTTGTCTATTATGCTTCCTgataaatttttctgtaaaaaacTGATGATGAAATTTGAACTTTTGTTCCAAGGGAGTATTTCTGTACTAGTCAGTCACTCATTATATTGATATATTAGCCAAACATTGACTGACAAATGAATCTACAAAAAGCaattcagaaagaaataattgGGTCTCTCCTACAGTGTAAGAAGCCCATTTTTAAGGAAATTTTCATACTAAAGCTATGTAGTTTTCTTCCATACAAGACAGGGATAATACCATCTATCTCTTGGGGTtactaaaaaaaatcaagtgagtACTTTATAAGCCTTAAAATActaaacagtattttaaatactaaatattattaatttt--tattttatttcctgcttTCTGAAATACCAAAGCATGTTTCTTTACATTTACTACAAGAAATTGGCCTCTAATAGCTGAGGAACAGGGATTGAGGGTGCTGAAAGCACAATATTGTCTACAGTTTCCAGTCccaatctctctttctctctttccctctgtacTGGGGATTATACCCAGGACTTCgtactgagctacattaccaGATCAACccttttctttagcttttttgaAACACAATCTGCATTACccatgctggccttaaatttataaccttcctgtttcagcttcctgaatagctgtgatgtttctaatttttaaaaattcagctcaACTGTTTTTATACTTTAAAGATTGCTCAAGACTCTGGAAATTTTATgg-cttttaaaatgaatttggtTTTTGGTATAAACTTTATGAA-ATTATATAAGATACAT---AAAATATTGTAGCTATTGAAGGAAGCTTA------------TATGTTAATCACTGTGAtag--aaaaagtgaaatttataGCTTACCTTGGTTCAGCATTGAGTTAGTCATCTATTACTAGTGCAGGATATTACTGTCTATCAAGAATTCCTGGGTTAGAGTCCAGCCCAAAGCTGTCAACTTAATGGACTAATGAAGTCTCTGAATAGTTCTCTATTTAATAGAATTCTATTGCATACCGATTATGTGTCAGGCACTATAATAAGTTTATCTCTG---CATTGTTattcaggtatttttaaaattttaaataaaatataagtaatataACTAGTAA---TCTGTGaccagtagaaaaataaaacttgagcATGTAAAtgtaatagaataaaaaaga----ttCATTTATGACCAGAATCTAGAGCTTTAGTTTTCTAGATCATTTTTATAGTGAgtaataaaatatcacataaaaaACATATTAATATCTTGGTAAAATTATTAACTGATGCTCCTGAGAAAATCACCTATGATATATCTTTCTCTTTA------CACTATTCTCTGAACTTCCAAAGAATAAGAATTAATAATAACTCACATTTTACTAAATGCTTACAACGTTCATCATAACAACTCCCTAGCAACTTTTTATAGGCTTTAGCAACTTACTCAAAATCACACACTGATAACTGACAAAGCTCTTTTTCAAAACCACCTCAGCATGACTTAGTAATCAGTGTTGTTTCCCACGATGTGGTCCTGTTCCCAGACCCCGGTATGGTCAACTGGCTATTTAGAAATGCTGTTAATGCCGAAATAAATAATGGATaactttctttttgta-ctttgctTGACCAGAGAATTCTtgttcttgaaaaatatttttttagttttttaaaaatagatttaatcTAAAAATATT--GACTAGCTTACAttatattgcaaaataaaattcatttctactttttttcctttgtagccTTTCATCATGTTTCTGTATATCCAAAGAAGGAACttccttttttcatccattttacAGCAGGACTATGTTCTTCTACAGCAATGATAGCTCTTCTCACACACCAATTTCCTGAAATCATGGGTGTTTTTGCTAAAGCTGTAAGTATGATCTCAAGGACTTGCATAGAGTATTTGTAAAGCA-CACAAGAAACCTTCTCTGACCTGTTTGTGATAACTCAGATGACCAACAG-AGATATT-------------------TGTAAAGTTCCTGCCATAA-TATG-CAAACGTAACTTTCTGGTGACTTGAACTATTCTTCTGTTGCTTAAAAGTTTAAAGAATATAGTGCT-TGACATTATAa

a score=116388
s chr3           104928188 3814 + 160039680 [encoded data, 4145 characters]
s HiC_scaffold_1 115482107 3785 - 233722169 [encoded data, 4145 characters]

a score=4637
s chr3           104932333 144 + 160039680 TTTTCTAAATATTTTAAA-----------CTTATATTCCTGCAA------------------TCATATAATTACTACAGTAATGCAGCTGAGGTATTTTCCAGAAATTCTAGAGATAACAGAATGAGCCTGTGATATAACAAGACAAGTTTTTTGAAGATCTATTTTATtatt
s HiC_scaffold_1 115485961 173 - 233722169 ttttttaaacattttgaattgtaaCAAAGCTTATATCCCTCTGAAGTACATGCTGTTCTCTTCTCTACTATTTCCACAGTAATATATTGGAGGTGTTTCCCAGAGACTATAAAGATAATCAAATGAGCCTGTTGTGAGACAGGTCAACAAttttgaatgtttacatttttgtt

a score=159259
s chr3           104935769 6282 + 160039680 [encoded data, 6975 characters]
s HiC_scaffold_1 115488714 6205 - 233722169 [encoded data, 6975 characters]

a score=147433
s chr3           104942687 5709 + 160039680 [encoded data, 6718 characters]
s HiC_scaffold_1 115495024 6297 - 233722169 [encoded data, 6718 characters]

a score=4464
s chr3           104947006 186 + 160039680 CTTGCATGTGTGGACATCCACAGTGTTTCTGCACTCCTTGCACCGCACAGCACAGCACCAGTGGAATTTGCACTCACACTGGGTGACGCGGGTGACCCGAGTTGTGTCATACCCTCGGCCACAACACATGATTTCACACCCATCTGTTCCTTTAGAAGTCTTGCTGCAGACGCGGCCTGCGGTACC
s HiC_scaffold_1 233289279 186 - 233722169 CTTGCACACGCTGACCCACTCGGTGATGCGGCACTCTTCACAGACCACGAAGCAGCACCAGTGGAAGCGGCAGTGGCAGCGCTCGCTGCGCGTCTGGCGCAGGATGTTGTGGCCGCGGCCGCAGCACATACTGCCGCAGCCGTCCGGGCCCGAGCTGCTCTTGTTGCACAGGCGGCCGACGGTGCC

a score=28234
s chr3           104950720 698 + 160039680 tgtgtgtgtgtgtAGCTCACC-TCTTGCCCAGAACTTGAAAACAGGTGGATCATTTAAATGTTCTCT-------GAGTTGTACCTACTG------TATCCCAGACACCAGGGATATAGTGAGTAACATAGT------------AACATATGACCTGCCAGCCTGAGACATA------CCTATCTCAAGACAAGGTTTTCATGTAAGGAAGTGACTGACTCCTTTC---------CCTTCTTTA----ACTCCTGCAAGCTAGACAGCCCTTGATAAAGCAGAAGTGCCTGTGCTAATAAGC-AAGCTCCATGATGTCTCTGCCTGCTTCTTT--CTCACCTGCAGCCTTGTCCAAGACACAGTAGTCAGGGGAGTTGTCAAAGTAGACAAGATCAGTCCGGGTGGCGTGGCGATAGCCCTGGCGCGCTGCTGTGAAATTGGCCCCATCCTGTGTGGCCGTCACCTGCACAGCCCCATCATATCGCCTCCTCAGGTAGTCACCTGTGCGTCGGAAGTCTGAGAGTGCTCTCCAGCAGGTGCGCAGAGTACAGGAGCCACTCACACCGTGACACTTGCACTCCAGCTTCAGGAATCTCCGAACAGCCTAGAGGAGAGAGGAGAGAGCTCAGGA-----CACTGTACAGG------------CATCCCTGGGGTC--AAGCAGTCGTGCTCTGAGCTATGCTGATCCAGGCCTGCGGTTGAGCCCACGGTGATTCTCTGCCACATCAGATCCCACCCAATCTTCCTGA
s HiC_scaffold_1 115502486 750 - 233722169 TATGTTTTTGTATAGCCCTCAATATTGGTTGTAACCCAGAACCAGGTAGTTCATTTAAACATCCTATACTTCAGGTGCTGGAAATACAAAGGAGTGACTTCAGGCCTCAAGGA---GCTGAGTAATCTCCTCTCCACTTGGAGACCACAGAGCCTAGTAGACTGAGGCATAAGGTCACCAATTTCATGCCCAAGTTTTCATGTGAGGAGGAAAATGACTCCTCCCACAGCACGCCCTTCCCTACATAGCACCTACA-GCTTAACAGACCATGATTCAACAATAGAACCTGTGCTAAGAACCTGGGCTTCATAA---CTCCCCCTGCTTCTCTTACTTACCTGCAGCCTTGTCTAAGACACAGTAGTCTGGAGAGTTATCAAAGTAGACAAGATCAGTACGGGTGGCACGGCGATAGCCTTGGCGGGCTGCTGTGAAGTTGGCACCATCTTGGGTGGCTGTCACCTGCACAGCCCCATCGTAACGCCGCCGCAAGTAATCTCCTGTGCGGCGGAAGTCTGAAAGTGCACGCCAGCAGGTACGTAAAGTACAAGAGCCACTCACGCCATGGCACTTACACTCCAGCTTCAGAAATCGCCGTACAGCCT-GGGGAAAGAGGAGGCAGGTAAGGAATAGGCACTGGTCAGAGAACTTTTTAGTCATCCCAGGGACCAAAAGCATGAGTCATCTGAGATCCACCAGCATAGCCAGCTGGTTGAGCCCTTGGTGGTTCTC-------CCAGATCCCACCCATTCTTCctaa

a score=4540
s chr3           104951027 274 + 160039680 GACACAGTAGTCAGGGGAGTTGTCAAAGTAGACAAGATCAGTCCGG----GTGGCGTG-----GCGATAGCCCTGGCGCGCTGCTGTGAAATTGGCCCCATCCTGTGTGGCCGTCACCTGCACAGCCCCATCATATCGCCTCCTCAGGTAGTCACCTGTGCGTCGGAAGTCTGAGAGTGCTCTCCAGCAGGTGCGCAGAGTACAGGAGCCACTCACACCGTGACACTTGCACTCCAGCTTCAGGAATCTCCGAACAGCCTAGAGGAGAGAGGAGAGAGCTCAG
s HiC_scaffold_1 233307352 270 - 233722169 GGCGCAGAAGTCCGGCGAGTCGGCGGCGTAGAGCAGGTCGGCACGGCCCGGCGGTTTGAGCGTGCGAACAGCCGGCAGCAGGGCTTTG---------CCGTCGTTGGTGCCCATGACGCGGGAGGCGCCGTGGAAGCGCTCCAGCAGCCGCGCGCCCACCTCGCGGAACGGGGGCAGCTTCTGCCAGCAGGTGCGCAGTGCGCAGGAGCCAGACAGACCGTGGCACTTGCACTCGGTGCGCGTGTGGCTCCGCACGGCCT----GAGAGAGCAAAAAAGCCAG

a score=127281
s chr3           104952779 6370 + 160039680 [encoded data, 6997 characters]
s HiC_scaffold_1 115503958 6002 - 233722169 [encoded data, 6997 characters]

a score=156332
s chr3           104959762 6318 + 160039680 [encoded data, 7237 characters]
s HiC_scaffold_1 115510030 6666 - 233722169 [encoded data, 7237 characters]

a score=52338
s chr3           104966831 2356 + 160039680 TGGAGAGCAACTTTCTGCTGTGGAACGTCCTCTGTCTTTATCTCTTCTTCCTT-TAGCATACGCCATCCTGTTATG-CCCAAGGCCTCTGCCTCTGCTT---CTAAATTTGACCCTGAAGCCTGGACTCGAGCGTCTTAAGGACGCCAATGGGGAGAG-TCCCTGTTAGTGTCAGCCAGCAAGGCCCTCAAAGCAAGATTCGTCACTACTCCACTCCCTTAAACATCAGTGTAGACAGGGTCCCTTTCTGGGGCCATGTCTGGGATACAAACCAGATTAGCTCATCTCTCTAATCCTCTTTGTGCTGGAGCCTCTGCCAGGCAAGGACACCCACAGTGCCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtatttgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCTTGGAAAGGCAGGGCACACAAGGTTCTCTCCTCTGG-ACCCCCTCCTTCGAGTAAA--GGCCAAGTCAGCAAGCCTCCCTGTGTTTaaaaaaaaaaaaaaaaaaaaaGGCTGAGGTTTGAGCCAAGC-----TTGCC--------TCCCACCTCCATTCCAGTCTCTT---CTGCAGGCTTTCCAGAACTGGATTATGCATTTCAGCTATTCCCCTGTT-----CCCGAAC--AGTCCAGAATCTACCCCTCTTCAACGCATATCTCACGGCCTAATTGTGTGTACTTTTCGGTCATTTTAG------GACTTGGCAATCCCTTCTTGAAAAGCCCAGAACTTGCAGAAGGACATAGGGAACGTGGGGGAGGGGTGGGGTGGGGATCAGGCTGGCCCTCGGCATTGCACTTCAAATTGGAAGCCTCCAACCAAGTCCCTGAATTTTC-CTTGGAGAGATCTCTCTGGGCTGATAAGATCAAAGCATTCCCTCTGCCAAATCATTACCTTATTTTCGAGGCAATTACAGAACTTATTGTATCAATTAGCCAGGTCTCCAGCTGCAGCTGTTTATCGCTGGCTTTTAGTTCGCTGGCTAAGGGTCTGCCCTGCCGAGAAAGCCGGA---CCGAGGAAAGCGAGAGAAGGGCGGCGTCTGGGCCGGGAAGGCCCGGTTG-CTCTCTGTGGGAATGGTCGGCGGAGGGCGGGAGGGCGTCCAGGGGAGTGGAGCCCGCGGACCACTCTCGCCGCCATCCCTCTGTTCTAGGCGTCACAA-----------CGCACGGACGTGGCCCAGAGAGACG--CCG-CAGACCCAGGGGTGAGGCA--GGTCGCCGGGGTCGGGCGAGGCCGGGGCTCC-------GCGGGGACCCGACTGAGCGAGCCCAGACGCCCAGTCCTTTGCAACGCTCGCGGCCGGCTGGAATGCACCCCGTGCGCAGGGCGCCCCGCCGTGGCGTTTTCTGGAAAGACAGAG--GGCCGAGTTTCATT---TTGGGGATCCCTGGGTTTCAGATAGGTCTGGACACAGAGAAGGGAGATATTTCCAAGAGTGGAAGAGTGTGACGTTCAGGGATTCCACCAGGACCGCAGCGCCTAGAACCAAACGTACCTGAAACCAGCATGGGTAAGGAATCCCTGGACgtcctcagactttttgatcttagaaacacaaatattaccgaggttcctccagagggcttcttttgtttaggtgaattaCTGTCactcacggtcactggagtaacagaaacacagggaccaactgataaagtccctgatggccagccgaggaggccatgagcaacaacataaaaacatttcttgatagtaatccaaagaataaaacaaatatccacgagtctgaactaatataaata-aacaactgaacaaataaataaatggggaaaggacaagtctcccatgtaggaagacttccaagaaacttatgtagacactgcacactcagcgacacgaagtatgattctaatccttaagtgtgcgctgcacattctgacatcttcctaacacacacaacacagctatggtgtggggaagggaaatggaatttaccatgggagaaacctgacaaatactttagccg----gggcatcaggctcaacattattggagtcagggcaatagtttttgcccC--------AATGAC-AAAAATAACACTTAAGTCTCTTGTTGCTACAgagcaacaggaccacatttgttgctagagaaatggtaaaatggcccagtgagttgggaaggcagctcagggatgtcataggaaatgctatatactcttacc----gcgtaacgaaataattgcacccatt----------------cactggg-----atggccacataaaatcctgcacacaga-ggctgatagctactctctccataactgtcaggatgggggagcaactgacatgcccttcag-agatgaatggagacgtgagct--gtgcatacagagaatggaatgt-ttttagtgataaaa
s HiC_scaffold_1 115518812 2149 - 233722169 TGGAGATCTAGTTCCCTCTGTGGGA--GCTTCTGTCTTTATCTCTCATTTCACATAGCACAGCCCACCCCATTGTTTCCCCAAGTCCCTATTTCTTTGTTCCCTAACTGTGACCATGAAGTCAGGATTCTAGTATCCTAGGAACTCCAGCGGGAAGGGGTCTGTCATGCTGTCAGCCAG-AAGTTCCTCAAAG---GATTTCTTACTCCTTCATCCCCTTAAATGTAAGAGTAGACAAAGTCTCTGTCCTGGGCCATGTCTGGGATACAAACCAGATTAGCTCATCTCTCTAATCCTCTTTGTGCTGGGGCCTCTGCCAGGCAGGGACACCCACAG-------------------------------------------------CGTA-------------------GAGTgagggtatgtgtgtgtgagtgtgtgtgcagaTTCTTGAAA--GCAGGACACTTACGGTTGTCTTCCCAGTTACCCTCTCCTTTGCCTGAAATGCCCAAATCAGCAGCTCTCACTATGT--------------GAGAAATGTTACTG-GGATTGAGCCAAGTCAAATTTTCCATATCTGTCCCTAATCCTAGTCCAATCTCCTTCACTACAGCCTCTCTAGAACTAGACTGATC-TTGCGGCCATTCCTTGGATTAGAGCTAGGACTAAACCCAGAAGTCACCCCC--TCCATACATATCCCACAGTGTGTTTGTGTG--CTCTCCAGTCTTCTTAGAAGAAAGGCCTTTCCATCTCTTCCTGAGAAGCACAAAACCAG--GCTAGACACAGAGGACTTGGGG-AGGGGCAGCTTGGGGCCAAGGCTAACCCTGGCCTTCACACTGCAAATTAGAGGCCTCCAGTCC-TTCTCTGAAGTTTCATTTGCAGAGATCTCTCTTGGCTGATAAGATCAAAGCATTCCCTCTGCCAAATCATTACCTTATTTTCGAAGCAATTACAGAACTTATTGTATCAATTAGTCAGGTCCCCAGCTGCAGCTGTTTATCGCTGAATGTCA-TATGCTTGC-AAAGGTCTGCACGGCCCAGCAGGCCGGGACCCAGAGCGGAGAGGGTGCAGGGCGGGAGCGAGGCCAGGGAGCCGCGGGCGACTTCCCACAGAGGTGGCCGGAAGAGGGCAGAAGGGCGCGCTTCGGACTGGAGCGCACAACACGC---CGCCGCTTCCCCTCGGCTTCCAGCTACATCAGATCTGCTCTTTGCAGCAAAGTGATCCTGGAGGCCGAACCGCCCGAACCTGGAGCGAGGGCGTGACTGCTTGGGTCAGGCCAAGCCAGGGCCCCCTACCCTGCGGGGAAAGCAATCAGCGAGCCAAGACGCCGCCCGCCTCCCAGCTCTCG-----GGTGGTGACTCACTCTGTGTGCGGGGCGCCCCACCGTGGCGTTTGCAGAGAAGACAGGGCAGGATGGGCTGCTTTCTCTTGAAGACCCCT-TGTTTCAGACTG---CGAACACTAA---------------------------------------------------AAGAACGCACTGTC------------------------------------------------------------------------------ACACTGTCGTGG-------AAAGAGCTTTTGTT-TTAATATCTATTCATGTTA-----------------AACATGTAAACAGGGACCAGCCAAAATCATTTTCAATGACCAAAGCTAGACTGTCTgagcaacaaaa-gaaaattgtTCTGGATTgtaacccaa-----aatataaatatccaTGTgtctgtaaaaatataaatataataaacgaTTGAAGACATAAATTGGGAAAGAA-ACATTTCCAACGT-GGAAAACTTC----------ATGTAGATACTCTGCCCTC---------AAGTGGAAAGCGGGCTCTTGGTTG--------------TGACTtcctttcaaaaaaaacagtatagaAGGCGAGGGTGGAGACGAAGAGCAACTTTTC-TGTAAGAAACCTGGCAAATACTTCAGCCAGAATGGATGGCAGG--TAACATAACCAGTATCAGGGTGAAAGTATGTATTCTTGGTATGATGTGACTAGAGGTGACACTTTCTTGTCCTGTTGCTGTGGAACAACAG----------ATTGCTtatgggaatgcaaaatggtgcaGCCACTCCAGAAGACAGTTTAGAAGTTTCTTAGAAAACTGTATGTACTCTTACCATAAATATGATTCAGCAGTTGTGCTCTTTGGTATTTGCCCAAAAGAGCTGAAAACTTATGTCCACACAGAAACCTACACACAAACCTTTTTTggcagctttatttataattgccAGACTTTGGAAGCAACTAACATATCcttcagtagatgaatggatatGTAAACTTGTTATATCCAGAGAATGGAGTATAACTCAgtgctagaa

a score=35454
s chr3           104992871 1895 + 160039680 GAGGTTGCTGCGCAGCAGCACCTCGTCCCATAGAGGTTGTCCACGTCC------GAACACCAGGGGGCGCGAGCAACCTAGCTTTCGGGACTA-GGGCGAGGCTGCCAGCCTGAAGAAGCCTGCTTGGCATTTGTGCCCA-------AGGGTGGCGTCAGAACCAGCGTCTTTTAATCCAGACATGCAAGT----TAATCTTCCCTACCCTGCAACTCCGATGGTCAAGGG--CAGATAACCTAGCTGCTGT------ATGCTAGGCAGAGAACCCCACGGGAAGAAG-GCAAGCTACCATTACA----TGCC--GATAGA--CTAGCCCAGGTTG--TCATTTAGC-AGGGTTCCATACAGAATGAC---ATTATTGTT-CTTAATG-TCTCTTTGGTCCAAATTCCTTTTGCTTCCCCTTGCTGTATACAG--TGCAGCTATACCC-CATCTATGCAAACCAAGACCTCTTTCCCTTCTGTCTGCGTGTATTATTTG--TCTTAAGTCTCTAAGCTCTCTGATCCTGCTCTCC---TCTTAGGCTCTTGGACAGCCCCCACCCCAACTTATCTGAGACACCTACTATGTCTTAAGACATGCATTATTGTGAGATGTCACTTATGTGAGACTCATCTCCCTATCAATGTGTAAACTACAGCACTTA--------------ATAACTATATGCTCAATAAATTAAGAGGCAGATACAAAGTGgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgCGCGCGCGCGCGTGCATCCATATTTCTAGATCCAGCTCAGGGTTACATAAGAGCCACCAGCAACAAACAACTGGTTTTCATCTGTAtttatttccttttaatacagtatcttgctatgtaacccaggctgtccttcaacttgggatcatagacttttatgctggcACACCAACAAGTCTCTATTGGATATGCAAATGAGGACCCACTAATGTATCATTCCTATTTTGTTCTGTGTCCTATATGTCTACAGCCAGCTGGGATTACCCAACTCCCAGAAAGGAAGAGTGAGGAATGTGGACTGATGTGGGTGCTGGGGAGTTGTTGGTGGGGGCTGGGAGGCATGAGGAGGCCCGGGGCAGGGAGCAGAGCTTTCCCATGGTGAGAATAAGGCCCACATAGAGAATGAGGGAGGGAGAGTTGCCAAGATCTGAGTTATAGCAGAAGGAAGCTGAGCCCTGAATGGGAGCCTTGTGTGTGGCCCTGTGCTGCTGACTCACC-AGGCTGAGGAGAGCGAAAACATGCTAGGGATGAAGAAGGGGCCTGTTTATGCCCTGCCACCACCTCCAAACCGCCCTGCCACCCCAGATTGCTTTGG-TCAGGGGCTTCCTGAGGACACC--AGCTGCCCCGAGGTACAAAGAGTCCTGGAAGGCTGTGATTTAGGTGGGACAGGCAGGGGAGAGGAGATGGAACACACAGCAGGGAGCGATAAGAGATGGGGAG---TTTTGAGAATGCAAAAGGCGGGGGTTTAAGGGACA-GCGTAGCATCTGAGTTCTGATGGAGAGAGGGGCC-AGGAGGCATCCTGGTGGCCCTTCCTCACAGGCAGGTGTGGCAAGTCAGAG---TCTGAGCAGGGAGGGGACAGATGCTTACAGCTTCTGTGTCTGCCTGGCTCTACCTGAGGAGCAAGCTTGCCTGTGAGTACTTCCCAGGGCTGAGGCCAGACGGAGGGGCCCAGCCTGGGAGCAAAAGCCCTCCCATGCTTCTCATTCCTCCCCTCACCTGGCTGTCAAACCTGTTCAGAGAC---AGGACAGGATTTTT-------GTGTGGCAATCAGGCTGG----TGGGCA---------GCCTGAGGCTTAGGCAGCCCGGGCAAGCAAGATCAAAGCCAAGCTTTGTGGGGAAGCAGGGGAGAGGACAGGGAAGGCCTTAAGGGAGTAGCCAGGACCAGGCTGACTGCTG--------GTCCCAGGTCAGCTCA-GGAGAAGC
s HiC_scaffold_1 115550808 1678 - 233722169 GAGGTGGGTGCGCATTAG-GCTGGGGCCGGGAGAAGC---CCACGGCCCCTGGGAACCGCCAGGGGGCGCGAGTAATTCATCCTTCGGGAATACGGGCGGGGCTGCCAG---GAGGGAGGATCCCAGCCCTCGCGGCTCACCTTATCAGGCTTAAACTAAAACCA-CATCTTCCACTCCGCATATACAAGCAGTGTAACTTCCCTTTCACCGTAGCACCAGTGGACAGAGGGCCAGATAATCCACCTAAGACTTACTAAGGCTAGGAACAAAATCCAAGGGGGAGTTTCGCATACTGTCTTTTTACTGATGCCAAGATAGAGGCTTGCAGAAGTTAATTCACTTGCCCAGGGGTGCACAGAGAGTGCCCAAGTTCTCGTTTCTTAATGATTTTTGTTGGCCAAACATTTCTTGCACCCC-----TGTGTACAGACTACAGACATATCTGTAGCAGTGCAAACCAAGTCCCTTCACCCCTCTGTTTGAATCAAGCACTTAGCTCTGAAGCCTCCA----CTATTTTCCTGCTCTCTGAGCCTCAGGCACCTGGAG---CCCTACC---ACCTATTTGGGACACCTGCTATGTACT--GCCTAATACTATCATGAGATG-----------AGACTTGTTCCACCACCAGGGTATAAATTCTAGCCCTTAGCATGATGCCCTTAATAATCATAGATAGAATGAAT-GAGAGGTAGTCACA---------------------------------------------------GCAAGTGTGTCCCCCCA---------ACCTATCTCAGGGCTGCA-GAGAGCCAGCAGCAACAAATA---------------------------------------------------------------Cctcaa----------------------------------------------gaataaacaaatgaggCTTTAATAGCGTAACACTTCTATTTTGT--------------------AGCCAGCTGGGACTGCC-AACTCCC-GAGGGCAAAGATGAGgaatgtggg----tgtgtgtgtgagggggc--------gggaggaaggggaaggaggaggcctGAG-CAGGGAGCAGCGCTTTCCCATGGCGAGAATAAGGCCCACATAGAGAATGAGACAGCAAGAGATGCCAAGATGTGAGTTAGAGCAGAAGGAAAATGAGCCCTGAATGGAAGCCTTGTGTGTGG-CCTGTGGTGCTGACTCACTAAGACTCCGAAGAG-GAAAACATGCGAGGGATAAAGAAGGGGCCTGTGTGCGCTTTGTCA-CGCCCCCAAACCACCCTGCCACCCTGAATCCCTCTGGTTCAGAGGCTGTCTGAGGACACCCTATCTGTTTTGAGGCACTGATTGTCCCGGAAGGCTTTGATTTGGGGCAAGTGGGCAGCAGGCAGGAGAAGGGGCA------------GGACAAGGAAGATGGATTCCTTTTGAGGGTGCAAAAAGCTGTCCCATGGGAGATGTGGGTTGCGGCTG-----TAATGGAAGAGGAGGCCAAGGAGGCATGGCTCCTGCTTTAGCTGACAGGCGGGTGTGA-AAGTCAGAGACTCCTGTACATGGA-GGGACAGATGCCCACAACT----------------------------------GTGGGTGTAAGGAGTCCTCA---------------TGAGAAACAGCATCTG---GTGAAAGATCTGCCATCCTCCTCAGTGCCACCCTAACT---CTGTCAAACC-ATTCAGCTATGTGAGCACAGGACTGTGCCACCAAGTGTGGCAGTCTGCCTGAGGCCTAGGCAGAGGTCATGGCCTGGAGTTCAGGGCAGCCAGGTGACCAAGATCAAAGCCAGACCCT-TAGAGGGGCAGATGAGAGG-CAGGAATG--CTTGAGGGAACAATCAGAGCAGGGCTGA--GCTAAGAATTGTGTCCCAGGCCAGCTCAGGGAGGAGC

a score=14858
s chr3           105000628 385 + 160039680 GAGGCTGTCATGGGAAACTGGATATAGCTGGTGTTTGCTGAATGGATT--GTTAATGAGCTTA-----------CTTAAGATACATAAACATCCACAATGTTTGAACATCTTTTGTACTTCAAAGGGTTTTCAAGTACTTTCGTCTGGCTACAACTTACAATTGCAAGCATGGGGTAGCAGCGAAGGCATGGACTAG--TAAACTTTAAGGGAAGCATTAGTCATTTGTGGAATGAAAGGGCAAGGCAAGATGAGGCA---TTAAAACTGGAACCCATGAGTCACTGGTGGCTTCTGGTC--GAGTTCCAGCAAAACCATCAACTGACTTTTGCATATAGACACATCCACTTTTCTGGAACTACAATATATAGCTCTTCTAAGATTTTCAAAAGGTCCAGAACCC
s HiC_scaffold_1 115556289 382 - 233722169 GAAGCTGTCATGGGA-------TATAGCTAGTGTTTGTTGACATGATCTCATTAAATGGCTTAAATGCTAGAAATTTAAGATATGTAAACAGCCAAACTGATTGAACATCTTTTGTACATCAAAGGATTTTCATGTGCTTTTAAGTAGCTACAACTTA-GATTGTAAAC-------AACACAGGAGGAATGTACTGGCCTAAAACACACAGG----ATCAGTTATTTGTGAAATGAGAGAGCAGGACAAGATTAGGCATTCTTAAAACTCGAATACACCAGTCAGAGATGGCTTCAGGTCTTTGGTTTCTGTGAGAGCATCACCTAAGTTTTGCATATAGGTGTAT----TTTTCTGGGAATAGAGTCAACAGCTCTTCTAAGATTTTCAAAAGACCCAAAACTC

a score=210113
s chr3           105001754 5054 + 160039680 [encoded data, 5514 characters]
s HiC_scaffold_1 115557054 5089 - 233722169 [encoded data, 5514 characters]

a score=20155
s chr3           105007929 759 + 160039680 TCCTCCTTCCCGAGTTACCTGCTGCGTCAGTCTCTCCCTCTCCTTCTCCAGCATGTAGGTGACATCATCTCCTTCAGCAGTGTCCTGTGCATGCCTCTGTCTTTCTTCTTCAAGGTCGAGGATCACCTGTAAAGGATTTTAAAGCATTAACTTCCAAACATCGACTCAACA--CTTACACTACTCAAGACTTG-------AGGGTTCCAGATTAAATGAGCAAACACATGAAATCCAGCCAGGGCTGTCGAGGCGCACGCTGTCGCAGCAGGATGAAAGACATGTGAGCTATGTGCTAGAAAACAAGATGTTTACTTTTGTTGAAGTATGTGCAGA--AGAATGCAAACAGAGACAAGAGAGAAACGAATTAGCTGTGGGGGTTGGGAAGGTTT--GAGAACCAGCAGAAT-TCTGGGAAATCACAGGCGGTTTGTTCTGACTAGGGACCTGCTGGGGCGAGCCCTGTTGTGGTGG------GCGGCACCACACAAGGCTGAG----GTGTTCCTCTCAATGCT---ATCACAGGAGGCACCAAAGCTCCAGCTTGAAACTAAAGATCAAA---TCAAACAGAACATCCAGTGCCTTGCTTAACTAACACC--------------CAGATCATCTGGG------AAAGACTCCT--ACTCCATCCTA-TGTGCAGAAGGCTCGGTTACTGGGATC-TGACCTGTGATTTTCCACAAGAATTTAA---CAACTTGCCCATTTATCCTAGTCCACTTATCCTGGTGCTGAATGCTCTAAATCAGTTTCCAGGAAAACAAAAGCAGAAATGGACATTTC
s HiC_scaffold_1 115562775 755 - 233722169 TTCCTCTGGCTTAATTACCTGTTGAGTgagcctctccctctccttctccagcATATAGGTGACATCATCTCCTTCAGCTGTGTCCTGGGCATGCCTCTGCCTTTCTTCCTCGAGGTCTAGTATCacctttaaagaa-tttaaaaaactcattcCCAAGCATTAAGGAATCATGCTTATAATACCAACTGCCTAACTAAACATAGTTCcaga------gactaaataaataaaacctagcCAGGGCATTCAAAGCGCACACTGTCG-GGTGGGGTG--AGACATACAAGCTATGCACTAGAAACCAAGATGTTTACTTTGCTTAAAGTAGATGCAGACTGGTATGTGAACAGAG--AAAAGAGTAACGAAATA---------GTTAAGAAGATTTCAGAGAATTGGCAGAATATCTGGTAAACTTTAGGCTATTTGGTGTGCGCAGGGACCAGGTATAG-----------GTGACAGAGCAAAATAAGATCACAGAAAGCTGCAAGCTGAGGTTCTCTCAATGCTCAGATCATTAGAAGAACCAAAAGG--AGCCTGAAATTAAACAGGTAACTTTCTAA---------CTATGCTTTGCTTTAGTAATAccgtactttttaaaaaaaagttacttaaGTGGGCATAAGACTCTTAAACTTTATCTTGCCATATAAAAAGCCCAATTATTAGAATCACAAATGGAGATTTTCCCCAAAACTTTACAGTTAACTTGCC---TCGCCCTACTCCACTTG----GGTGCCAAAGGATGAAGCTGACTTTT-----------AAACCTAAAGGGACATTTC

a score=30341
s chr3           105010181 2083 + 160039680 ACACATTGCCACAAATGAA-ACATTTGGGTTAGACTcttttt---ggccacaggcaactttt-agattttgactgaaagtataaaaaaatacactttccataaaaatgcatacacttctgatatgttatatatttcaggggccttgtgggtcatgcgtgacctacccatggTTAAGGACTTATCCTCTG------------------------------------------------------------------------------------GACTCA-----GTGAAGAGAAACAAAGGCTGACAGGCAAGAAGACCCAGCTCAGGGGCAACTTACCAGATGTGGCTTTAGCAGAGAGCTCCCGTGGAGATAACCATGAGAACAAACTAATGTCTACTGAATTT----GCTGACA--CCATCTCCCTCA-TTAAAATGTCTCCTACAAGCCATG-GTCGATGCCTGCCCCTTGTAGGGCCAAATCTAAATAGCTAGCTTTTTAAAATGCAGATGCTTGTCAAAC--------CCTGCCTA---TAGGCAGGAA----CAAGCTGGAGA------------------------------------------GGTACTACACACATT--GGAGTTCTCAAACCTGAAA-CTG------------------------------------------------------------CAGGGA---------------------------GCACAGGTTTGCCCTGC---------------ACTCCAGTGTAGAGAAGACTTAAAGGCCAGCCATGGCAGGAGCTGTTTACAGCCTTAC-------ACCTTGTAATGAAACCAGGAACCAG--ATGAGTGGAAACAATCTCAT-GCTTGCATGGTTAGTACCAGGTGGATTTATACTCCCTCTCT------------TCCCTAAATACCTGTTAATCTTTTT--ATTTATCACTTAAATAAGCAAACAGAGAATGCTCTGTTCAGCTTCAAGCATGGTTAAACACCAGCTTGCCACTAAAGTTTGGAAGACTGAGATTTTGGGGAAAAAAATGGCAC-----------------CAAGTATTTTGGAGTGACTCATCAC-AGATGAATGTCATCTTTAGTAACGTCTGG-----------------ACCTGTGCAATGACCCGTTTCCCTT--------------TGTGCCTGGACTCCTGTGTAA-CTGAAGAG---TCCGATACCCATGAGCTCCCCAGCCCTCTCCAATGCCCGTGAACACTGGTGGCTGAGGCAAGTCTCC-TGCGGAT----TTCCGAAGCCCAGCCTGGCTCTGGGCAAGCCTACCTTGCGGTGCCTGCTCTCGGCTGCGGCCAGCTGGGACAGCATGCGCTCCTGCATGTTCTTGCACTGCTTCATCACCGCCTTGAGGACAGAGAGGGGGTTTGTGCACACTGGCTGCTTCTCACTATCATTTTTCTCCTTCAGTGTTTCAAAATCTCTCTGAAGAGCCATTAGAGGGTCACTGATGTTATATTTTCCATAGCGTTCTTCAATGAAAGTATCTCTGTGTTGGGCCTGAGAATAAGAAAAGA------------------------CAAACAAAA--------------------------CCCCAAACCATTAAAGAGAGGAATGTGTTACAATACCAAAGGTGGTAGCATTAGTGTAAAC--------CTGACTACAAATCAG---GAG-------------------ATACCAGGAGG------TGGTGCCTTGC--AGTAATAtgaacact-------gacccagtattagacgtgatccacagcaggtttggccatattaacgtgggtgattttatagccttataaagtagcactaatcatctc--ctttgcaaatggaaaaatcattaaaaagaggctaa----------------ctactcagctagccgactgtcagaacaggtactt-aacccagctagcatggctctggaagtccCATGACttgtttgtttgtttgtttgtttttcaagacgggtttctctgtgtagccctggctgtcctggagctcactctgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgctgggattaaaggcatgtagcaccactcccgggctTGGAAGTCCCAAGTCTTAAAGCAGCAAACCCAGTGCCTCCACTTGTATGTCTGTGTTACCTGCAGGTTTATCTTATCTTTCTCCTGTG---TGGCATTTGCATTCCTAAAGTGTTAAGCTTGATGACTTTATCAGTTTATATACTTAACAACAAACCAGGTGCCAGCAAGTGCCGACAGAG---------GAGAATT------CAGGACTCCTTGTGATCTGTACAGAGAGAACTCGAGTTCACAGCTGATGGGTTAAGAGTGGGTAGGTACATATAAT--GCCAGCCACACACAAAAACCCCTTCTACCCCCCGCCAAATTCAACCCCTGCCCCTCCTTCTCAATCTCTGATCACCCTCTCCGTTCCA
s HiC_scaffold_1 115563550 2303 - 233722169 ACACAGTACTCTGAATGAGCACA---ggttaaaacttttttttaggTCTTTAGGCAACTTTTGAGAATTCAATTCAGCTATGGAAAAAATATATCTCTTATAGAAATGCACA----TTTGACATTGTGTATATTTTCTGGGGTTTGTGGAATATTTGTGGCCCAACCATGGCTAAGGGTTTTTCATTTAACCAGTGATCTCGAACTTTatttagagttttcaatgatacaaacagcccactacAACACATGTGCCACACCTTCACACACCACTGACTTAAAACtgtgaagagaaggaaaggatcaCAGGCAACG---CTGAGCTCAGAGGCAATTTATCAGGTGTGCTATAAGCAGATGGTTCTACTACAGATAGTCATTAAAGTAAACAGAAGTCTACCAAATTTTGCAGCTGTTAATCTACATTTTTCAATTAAAGTGCTCTCTAAAA---ATGCACTGGTACC--CTCCTTTTTGG------TATAAAGTGAtggtattttaaaatgcagaatccAACCAAACATCTTTTACTGGCCCAATTTGAGCAGTAAATGACAAGATGGGAAATAAATTCATAAGCACCAGAACTCCAGTAAGATGAGATAGAGGAAACTGTCCTAATTTAGGAGCTATCAGAATGGAAATCTGTCTTAGTGAGgtagaagagtttttttttttttttttggtcttttttatttttattggtaccagggatcgaactcacgactgcctgcttgcaaggcaggagcttatgccgctgagctaaatccccagccccag-gtagaAGAGTTTTAA-GGTAAACAACTATAGGGACTACTTATGGTTTCATGagcaataaaatacaatgaaactca-aactaggaataaatgaaaataatgtattcGTTTATGTGTTTAA---CAGGtcaattcct-ctctctctctgggataTAGCTTTTCCTAAAAAAGTATTCATCTTTCTCTATTTATCATTTAAGTAAGCACC---ATAACCCTCTGTTCAGCA-CGAGT-TGGTTAAATTCCAGGTTTCTGTTAAAGTATGGATGA-TCAgagctaaaaaaacaaaacaaaacaaaacaaaaaaaaaacccaagtattTTGGAGTGATCTatcaagaaaagaattttatCTTAAT--GTGTTTGGCACATTCTCCAAATTTAACATTTGGAATAATCTGtaaattttggggggggggggggtatctTCTGGCTCCTAGGTGGGCTGAGGAGCTTTTTGTTACCTATGATCCACCCAAACCG-------------AATTACTGG--GCATCGTTCAGTCTTTACAAGGATGTAGCTAGAACACACAGCCTGG-----GCTGAACCTACCTTCCGGTGCCTGCTCTCAGCAGCAGCCAGCTGGGACAACATGCGTTCCTGCATGTTCTTACACTGCTTCATCACCACCTTAAGAATAGACAGTGGATTGGTGCAGACTGGCTGCTTTTCaccatcatttttctcttttagtgttTCAAAATCTCTCTGTAGAGCCATTAAAGGATCACTAATGTTGTATTTTCCATAGCGTTCTTCAATGAAAGTATCTCTGTGTTGGgcctgggaaagagaaaaaaagtaagtattttcaataaaaagattaaaaaaaaatgtaaaaaaagtaagtagtttgctttttaaaactactGAGGAGTGAAATTTGCTAT-CTAGTAGAGGCACTAGTGTTAGTATAAATGTAACCTACTGACCACAAATTGGATTGAGTCATCCCAATACAGAAACAACATCAGAAAGGTAGCATGGTACACTATTAAGAAGTACAAATACTTATATGCAACTGTGTAATAGATACTGTTTTAGGCATTTATAGTCATATTAACTTACT---TTTTATAACCTTGTAAGCTAGAACTAATCATTTCCACTTTGTAGATGACAAAAC------ACAGAAGTTAAGTAACTTTGTTCTAGGTTACTTATCTAATAAACTGTCAGAATTAGGACTTAAACCTAGGCAGCCTTGCTC-AAAAGTC------------------------------------------------TGTATTCTTAACT---------------------ACCATGATTGCTGT---------------TTTGCTTATGTCTTC-------------------------------------------------------------------------------------------TTCTATTACCAGCAGGTATGTCTtaccttttctttctgttatgatatttacatttatgaaatatTAAGCATGACAATTTTATGAGTTTATATACTTAGCA-------AGGTACTagcaaatatataaagaatgctaAAATGAGAATTACAAGCTGGAACTATTTGTGAAATGTAGAATGC-AACTTCACTTGACTACTGAAAGGTAAATGGGGTGGGGGCACTCATGACCAGTAGGCCAGAC---AAAATTCCTGCTACCTGCAGCCAAATTTTGCTCC-------CTCTGTGAGTCTCTGTTCAGTTGCTATCTTCCA

a score=14910
s chr3           105017960 519 + 160039680 GCATTTATTTAGTACTTTATGTTTGCTGGGCAGTGCATATGCTGTGATGTGGGCGGTGACAGAGGAAGGCAGATTTGAACATGTGAGGCAAAGTTCTCAGTCTTCAAGAAGATAAAAATCTGCTA--------------CATTTTTAAGGACAAACAACAGGAGCGAGGGTGGGCAGCCTCTGCTTGTTTAATGGTTTCTGAACTGCATCACACATGTTTAGAAGAACACCAAGTGGAGTTTATTTGATTGGAGTTTTCTAAGACACACAGACTTTAACCTCCTAAGGAATAGGAAGGAAACGGCCAACCCTGGAAGTGGGTGGGTTCTGGCAGATAAACGGTACAATCAGTGACTTAATGAATCACAGGAAATAGGTACAGCGGTGGTGATGGTGGGGAGACACTTGACCCCAAACTTCT---GGAGTACCACACAATG-GGACTAACCCACAGGCCGTGGGACACGGTAGGTTAATCCTATGAACCTGGAGACC-TCTCTACTAGAGATGAACTGAGGCTCTTGTATTCACTGTAT
s HiC_scaffold_1 115572153 485 - 233722169 GCTTTCATTAAATACTC-ATGTTTGTTGGGTAGTAGGTAGGCT---AAGCAACCAGTGACACAGGAC----------------TAAGATGTAGTCCCCATTCCTCAAGGAGCTCAAAATCTGCCAGACAAGCATAGGCCTAATTCTAGTAACAAACAA------------------GTCTCTAATTGTTGCATGTTCTTTAAATGATATCATTAGTGTTTAGAGGAACACCAAGTACAGTTTACTTGATCAGAAGTTTCTAAGAC---CAAACTTTACACTGAAAAGAAATAGGAAGGAAAAGGCAAACCCTGGAAGTGGGTGGGTAATGACAGATAAATGGGACTA-CAGCAAGTTCATGAATCACAGGAA------ACACCGTGTGAGGTTGGGGGCAGGCGCTTAACCCAAAGCTGTTTGGGAAGTATTATACGGTGTGAACTACACCAGACTCtgtgtgttattttaatttaaccCCATCAACTTGAAAACCTTTTTTATTAGAGATTAGC-----CTCTTTAACTTACTGTGT

a score=13479
s chr3           105023315 518 + 160039680 CCACACAGACTGTCAGCAAGCTGACAAGATGGCCTCCTCTAGTCCT----ATTATTTCTACAACTGGCTCAA----TATACT----GACAGACCACAGATTTTGTTTTCAACTAAAACTTTCATAGTTTCCCTTGCTTCT---TTCTATAGGAGCTGCTAGAAATAACCTCTGATTTAACCTAAATCACGAGGCCAACACATGCAAGG-AGACACAATGACAGGAAGTCAGAATAACAGGAATAAGCTGCTTCCTTTTTCTATCTGTCTTAGTTTCAGGCTGAGTGACTGCTGTAAGCTTGTCCCAACTGCC----TGTGCTGGAAGGGACTGCCACTTCACAAGCAGAACCCCGTCTCTTCCTCCAAGACATAACACCCCA-----------CCCCCACCCACTCGGACACACACCACACAGATCCC---AGAGTTCACAGGAAGATGCCAGTCAAATGAGAAATTCA---------CTGGCACCTGT-------AATCCCTCA----CACAATTCACAGC---AAGAATGACACGTCACAGAAAGCGGTCTAGACAGCTGACACCACACTATT
s HiC_scaffold_1 115578560 551 - 233722169 CCAAAAAGACTTCCATCAAACATACAA-ACAGTTTCTTCCTGTCtcccaaattatttttaaaactggctGAACTGATATACTAAATGATATATCATAGGTTTTAGTTTTAGAAGCAACCTTTTTGACTTCTTTTGCTTCTCCTTTTTATAGGGACAACTAGAAATAACCTCTGATTAATCCCAAATCACAAGACCAACTCATGCAAGGAAGACACAATAAGAGGAag-caaaataacagaaataagctgtttccttttttaatctgttttagtTTCAGACtgaataaatgtaatgaaat--tccTTACTGCTGCCATCTGCTGAAG--------CTCTCGAATGTTGGAGAACTGTA---TTCTCTAATAAGTACCACCTTATAAACTGAGTCCCCCTATCTTTCCTCACATGCATTA-----ATGCCAAAAGAGGCCTAAGGAAGATGTCAGCCGAA-GAGAAATTTGCTTATTCTTCTGGCACCTTCATTCTTGAACCCCTAAATTCCACAATTTATAATGCAAATAATGACACATGATA-AATTTGG--CAGCTAGCTGATACCagacaatt

a score=17258
s chr3           105032626 485 + 160039680 ctctctctctctctctctctcCATACCTTTAAAGCTTCTATAACAAGGTCTCTTGCTTCAAGTTCTCCTTCAAGGATACTGAACAGTGTCAGGAGTTCAGGCTTGCTGAGTTTTTCCAGATTCATCCTGAAAGTCTTAAACAAAGGCAAAAATCAG----TCTCCCGAAGA-GGATCCTGCTCAGAGTGAAGGACAAAGACAAGACACAGAGCAAACCA---CACAGCATATGATACCCTTCAGACCCGCAAT--TCAAAACAACACCAAAGT--------TTCCTGATGTTAATCATAAACTGAACAGGAAGAGAAAAATAAATCCACTATAAATTATTGATTCCATCACCAGGATCAATTATTCATCACCTTTTACAAGGCTGGTTTGCAACC--------TGGGTTTCAGAAAGGATCAGGCGCTAATTCTGCCTGCTAGAAACTGACGTAG---TTTCCCAC-TGGGCATCATCTCGCTGGAGAATCACTGGGTCCCACAAGGATGCCCTA
s HiC_scaffold_1 115593685 506 - 233722169 ccctcttttttt-tctttcaacatacCTTTAAAGCTTCTATTACAAGGTCCCTTGCTTCAAGCTCTCCTTCAAGAATACTGAATAGGGTCAGGAGTTCAGGCTTGCTGAGTTTTTCCAGATTCATCCTGAAAGCCTACAACAAACACAATAATCAGGCAATCTTCAGAAGACAGaccttattttatataa---ctaatGAAAAAAGACAGAACATGCTATATCACTgtgtaaaatg-ttttaagaaaggaaatggtgaaaattaaacagaaatgtaAGAACTTTTTGATGTTAATGCCAAACTGAGCAGTGATAAAAAACCCAACTGACTTTAAATTACTGATTCCATCATAAAGATCAATTTTTCATCACCTTTC---AAGCATATTTACAAACAAATAATTTAAGTCTCATAAA-AATTAGTAACTAATTGTGTTCACTAGAAATTCAGATAGAATTGTGTTACGTGAACACTATTTGACTGGAAAATAATTAGATCATACAAAaatctctta

a score=21093
s chr3           105039926 2860 + 160039680 AAACTCTGAATCTCC---CAATTTAGGGGAGGAAGTGTGGGTCCATCACAGAGTCAAGAGTAAACGACCAACAGCATGCA---------------------------------------------GGCCAACCAC-----GAAATAAGCAGGTCCGGCAAT-TCTG-CCAGCGCTCGGGCAGAATTATACAGCTCAAGGTTTTCAGGAAAAGGCTGCTCTTAAC-CCACACTCATTATCAGAGCCATCACT-GCCAGGTTTCAGGCACGCCACCACACACAGCAGGCTGTCGACTC----------CTGTTTTCTGAGTGAGCTGTTACT----ACTGACAGCATCCATTAAGTGACTTTGAAAGACGGGATCATTCCAACCAGATGCCCAGCTTGCTCCTCCCAGTAGAGC-CCTCCAAGACCCTGCTTGGCCCACAGTTTACACCCAGACACTTCTGTGTAAGGAATGCTACAGTCTATAAATCTGAAAGAAAAACCACTTGTGGACAAGCTGTCTGGGTATGTTCTCACTGCCGGCTGGCAGTGCTTTAAACTTTAGAGGTTTCTTTCTTTCCCCCtttttgtgtagccctggcactcactcagaagaccaggctggcatagaactcacagagatctacctgcctctgcctcccaagtgctgggattaaaggtgtgccctacttctgcctgttcagttttcttTAAAAAAAAAAAAAAGTacacacacacacacacacacacacacacacaAAATGTCACATGTACTGCAATGCCCTGAAAAACTAAGGCCACATAAAGGGTAAGTATAAGAGGAGACTTTCCCATACGGTATGCAACTCCAGC------------------------CAAATTCGTGCTAAGCATGCCA-TTTAGTCAGTCCCAGCCTCCTCACCCCATTTCTCCACCTGACAGCGGGAGACTGAGAGTCCTTCTTCACTAAACACACATCTCC------CGCTTCCACCTCCttctccctctgtcctgtc-tgtcttttgaggca---------------gttttactatgtag--tctctgctggcctggtatagtcctgaactcagagaaatccccctgcc-tctgccttatgagtgcATGAAGTCCTCtttcttctttttgagacagagttttgctacgtagc-----ccaggttggcttttaatttatctctttgcttcagtccctcaagtactgatcctta--------taggtgtaatctacc---atgcttggcCTACCCATGACAACAATCAGAAG--TTCTGGGTATCAAGCCGGG--------ATGCACACGCAGGC-CACACCCCTCGCCTTATGCACACACCCACACAGCGCCTCCTTAACTACTTTGATGATTTTGCCTGGGAAATGTGTTGCTGT------------------------GCCCTGCTCCGTCTCTGACTAACACCCCAGCTCTGCTCCTTCTGGCCCGCACTACACTGTGCAGCTTGCTTCTCCACAAAGCCCGTGCTC--------TGGAGCTGAAGTGATCCTGTAGGGCAACAGGCATAGCTGTGTTTTCACCACA--GAGACAAGGTGGCAAGAAAAGAAAACACCCCAAACTGCTTCTCCAGCCATGTAAGCAATagggcagggcagggcagggcagggcagggcagggcagggcagggcagggcggagcGCAGGTAGTGTTTGGGTCTAGTATCTGGGTGTGAGT--ATCTGGGTGCAAGTGAAGGTT-----TACTAAGTAGTCAGTAATAAGGAACATGTAGGAAAAAAAAAAAATCAACATTTTAGATGAGTCTTAG-TTCCTGACAGGGTAGCCTCAAAA-------ACAAAAAC----------------------------------------------------------------------------------------AAAAATCCCA----CTTAAAAAGTCAAGTCAATTAAAAAAAATTCAGTCATT-------------------------------TTACTATGAGATCATTTTATTACACACTCAGATATTG-----AACTTAAGTAACTCATACTTGG-CCTAAAACTGCCTCA-------CAGGCCACTGAGTGAGGTCTTAGAATCAGTAATTAGATATGACCAGAAAGAGAAACTGAAGTTGCTCCAA-----TCATGTAGCCTGACATAAATCTGTATAAGACCAA--TATGGGTCATAA---CTTAAAACTCAGAGA--------TAATGCACAAAATAGGTATTT-TGACATCTGTTCACAGAACAGTGCATTatcctaaaaacccagtctatacctgggcatggtagtgcacaccgactatcccagctctgggaggtatgaggcagg---aggataaaaagctcaaagccagcctggacataaatacctggtggattcaaggcctgcctgggttatatgagacctttactaaaaacagaaaCAAAGCCCAGAGCCAGACCAAGCCAAACCAAAGAAAGCCAGTATGTGTGAGATAAATAGGGACCACTGTGCTTAAAGCCACCAAGGCTAAATAAATATGGAGACACGTGCACTGTTTCT------AGTGAATCCAGGGGCCCCTTCT-----TAGGTGGAAAGTACTAG-------------ACTATC-AGAAGATTAAACACTCTCCA--CCCTGGCACCCCTGGGCTCAGAAGGGCTACTTGCCTGTCTGTGCTAAGACAGTGTCAGCGTTCCACATGGTCCTACCACTCTTGGTTTTGTTTTGTTATTTTGTTTTTTGTTTGGATCAGGCCAGGGAAGAAAACCATGCTAACATGCTGTCACAAAATGATTTTCTGATTTTAAAAAGTAGTTTTTagccaagtgtgctggtgcacacctgcgaccc--agcttttgggagactaa---------------------ggctaggggagttga-------gaggccagcttCACAGCAC------------------GGTAGTACTCAGGGG----GAATCGCT--------------------------------------------------------------------------TCTTACTACTAGTTCCTTAAAAAATCCTAATGTCAAGGTACAAAACACAATTTCATTTGATGGAATTTTAAAATATTAAGTAATATAAACGTAATTAGCGATACTTTAAACCAAGCTTTTCTCAGCTGA-------CGATACTACAAGACTATTGACATTTCTATAATGTATGTCAatgggctgtatgaccccttaccccgagctcatg-----tggaatcttaattcctagaatttcagaatgtgactgact
s HiC_scaffold_1 115598635 3006 - 233722169 AAACTGTGACTCACTAATTAAACTAGGGGAAGAAATGTAGGTTTGCTATGCAGTCAAAAATACACAACCTACAACAtttaaacaaatctttttttttctcttgcagtgTTGGGTACTAGACCCAAGGCAAGCCACTGATTAAGCTAAGCCATTCTAGTAATGTCTGTCCAATACATGGGCAGAATGATGTGGCCCAGGATTTTGGGGGAAAGGTTGTTTCTAACTCCACATTCATTATGAGAAATACGATTCACTAGATTTTTGGAGTGCCAC-----ACTACAGTCTACAAACTCATTCccctatttattttctaaatgagcTGTTACTTGTCCTTGTCATCATCTATTAAATAACTTTGAAAGACAAGATCATTTCAAACAGATGCTCTGCTCATTCCTTCCATTAAAATATCTTCAAGGCTCAATTT--TCTTTAGTTTACACACAGATAGTT----GTAAGGAATGCCACAGtctataaatttgaaataaaaaccatGTGTGGACAAGTTGTCAGGATACAATATCATATTCTGTGGCCATAGC----GACAT--gaggctttattttt-------------------------cttaattaaaaaccCATATaaccatataa-------------------------------------------------------------------------------------aataaaaaaggataagcCTGTACATATTTTAATACAC--------TGGAACATATGCT------CCCTTGAAAGTTAA------atatgagccaggtgt--ggtaatacattcc---------tgcaatcccaacactctggggggctgacaaggattacaaattca-actCAGCCTGGCAGCTTAGT-------GGTTTAGTAAGACcgtcttgaaaataaaaagtgaaaaacaggG------------CTGTGGATATAACTCCGTACAATGACCCCAAGTTGAATCTCCTCAGTACtgtcatataaataaatacacagataaataaataaggctaactatcaaacatttttgtttccaatGAGTGGTT-TAAAGTGAGTGTGGTTAACATACCATCTGGgctatttg--------gtttttttatttggtactagggattaaactcacaaccttgcaattgccaggcaggtact--attGACCACATCGCACCAAATC----AAAGCTGATAACCAGAAGAACACAGGTATTTTCTACACAAATGTTTA-------TGTGGCCAGAGCCAGAAGAGTTACAAGTATCAAGAAAGGTgtgtcaaacacacacacacacacacacac--------acacacacacacacacactacctcTTTAACTGTAGTGATCATCTTGCTTAGGAAGTATATTGTGGCTTTGGTTACACTCATTTTCCCCTAATCTTTCCCCATCTCTGGC-AAGTCCCCATTCCTGGT---TCTGGT-----------TGTGCTTTCTGCTTCTTGAAGAAGTCTCAGCTTCTGTTTTGTGAGTCTGAATTAATTTCACAGGATAGCAGGCATTGCTGCCCTTTTACCACACAGAGATTGGCTGGCAGAAAAAGAAA-CACCTTCAACGGCTTCTATAGCTATGTAAGcaacagggcagggcaggg---------gcaggg---agcaGGGTGGAGTA------AACGCAAAATATTTGTCTGTCTAGTATCTGGGTGTGAGTGCATCTGTGTGgaactgaattttctttcttccaagtgGTAGATGATGCAGGacaccaaagacagaaaaataatata---tttataggcATTTTAGGTCCCTGATACAGAAACATCTAAACGAACGAACAAACACTACACAGCTAtacatatctatttttaaaatatcagtctagcatggtggtatatgcctggaatttcagctgcttgggaggctcaagcaggaaaatcacaagatcTAGgacagcctaggcaacttagcaagactttgtctttaaaaaaaaaaaaagctggggatgtatgtagctcagtataaaaaCTCTGGGGTTCAATTTCAGGTACCGGAGGGAAAATAGTCAGTTTATACTTGGACTTATAACTGACACATGGTATTCAGGCTATTCAACATGTTTTAAGTATCTGTAATCATATAGGCCCAAAGATATAAAGCAGACTTACTCCAAATGACTCACATCTCAT-ACATATATAAGAACAAAATCAACCTATGAAAAATTAGTTCTTAGAATGCCAAGAGCTAAGCCTGACATGCCAATTAAGTGTTTCTGACAGCTTCCCAGGAAACAAAGTAGTTCTTTAAAAACTAAGT-TATATAAAGTATTGATAATATGGGGGGGACAATAGAG-----GAAGGACAgaggaaggggaagtaaaaaaggatcaagatgcaattatgtatatgtacc-----aattc----cctacaataaatgtatttactgtatattgcaaacatatactaa-------------------taaa--aaaggaaaacaacatat--------------------tacatttataaatacagaATCTAAACA----TGGTCAAAAGTgtactgttatttaaaaaattgtaaccAATGCAATCTATTATCGGGAGGTGGAAAGTGTTGACACATTACCGTGAACCATCTATAAGATTTAAGATTGTCTATTCTCTAGCCCTTTTGGTTTTGG---GGTTATTGATACATTTCAGGTAAGT--GTGACAATACTCTAAAtggccct-----------tttcattccttttttttggcATTT--TAGGATCTGGTTAGGGAAATAAAACATGTCAACATAGTG-----------------------AGAAAATAACTTTT-GCCtggagtggtggcacataccaGCAACCCCAAGTACTCAGGAGCctaaacaggaggatcacaagttcaagaccaggtgGGGCAACGTAGCAAAATCCTGCttcaacatacaaaataaaaagggctagggatataactcagtggtagagaaccCCTGTGGTCAATCCCTAGTATTCCCCCAAATCTAATCAAGAAAGCATATCCTAtgtacatttgtttaaaaagactatttttgctactatcatttttaaaaatcttacaatgATGGTACAAAAACCAATGTCATTTTATGGAAATTTGCGATATTAAGCAACATAAAGCTTGTTACCAATATCTCAAATCAAGCTTCTCTCAGTTAAAGTTAAGAGATACTGCTAGAC---------------------------TTAGTTGTGTCCCTCATCACCTCCACTATTTGTACACTGAAACTCTAATTCTGggtacctcagaatgtgactaaCT

a score=90127
s chr3           105050210 3563 + 160039680 AAACCAAATACCCAGAAACTA-----AAAT------------AAAAATTAACCAATAGTTCCTAACATGTTCTTCAGAACTCACTCCATCCCCATTAGGTCAGATTCTTGTACATATATATCTTTAAAATGACTACAATTGATCATGTTTATAAGTATGGCTCAGAATTCATGACAGTAAAAAAGAAATTATATACAGCACCTAACCAGAGGTATTTTCTCATAGGAAAGTCAATATTTTA--GCCACTTCAGATATTGCAATTTCCTATTATGTCAGATATGGAAAAATCAAATTACA-CAAAGACAAGAAGGCAGATGGTTTAAACTAACAAGATGTGCCATACTTTATTAGATGTTATCTGTCTTAGTTTGACTCTTAGGTGAGAACTTTAGACTAAATTCAGTG--------------TTCGTATTGGGCACTGT--GGAAGCTACAAAGACTTCATGCAGTCTAAGAAT----AATTTAACGAAATGCACTaaacacgcacatacacgcacacgcacacgcacacgcgcacacacacacacacTGTCTGCACACAATGCTTTTCTTCATCTAACATGACCAAAAATGACACTGAAATGGTTAGAGGAACGAATTCTCCCAGAGTTGAACATCGGAGTACACGCTGTAATCCCAACAGGAACGGGAAAGCCACCCTGGGCTACATAATCTTCAGAAACATAGCGAGACACAGTGCTCCACTCTTGATTAAATAAAACAAACCCTCCAGATCCAAAGGTATATCAAACAGGTCTTGTTTATTGTGCCAAAACATCAATGAG-ATTAC----TCTGCTTCTCC-----TGTTTGTCCAGGCCCTGGAAATCACTGCTCCCTGGGTCTCCTGACGTCTCCTACCTTAGTTTATTTCCC-TTCTCTACTCAGGTAATGAGACACATCTTTTAGGGCTTTCCTGTTTTACTTCTAGGGTTTTTTTTTTTTTAAACCCCTGCTGCTATTTCTGGGATAATGTATCTCT-CCCTCCTATGGCAATAAACTTTGTGTTTGTGGGAGAGACCCTGCATACAGTTTCTTCTTTGTGCTTCCTCTCACTACATATCTGGAAACAATCATGGAACAGATCTGCAGCCCCCTAGAGTGGCTCTGAAACCTAGGAACCTGACTACTCAAAACTAATTACCTTCAGGAAGTCT---------------ACTCAGGAAGGCTGCAGACAACAGCCACTACAATCACCCTCTCTGATTGCAACTCCGCACCTC--GCCTCTATCAGC------TAT--AAATAAC-------------------------------------------------------------------------------------------------------------------------------------------CAACAGGAAAATGAACTTGAGA--TAAAAACTTAA-----AATGCTAAAAATATGGAAAA-ATTAATAGGTGGTACTGCTGGCCACAGATGATGACTGGAGATTCAATGACATTAATGTCAGGACAAAATCATTTGTACTTTGCAACTGCTAAAA------------TGCCAAAGACTTTAGTAGATCTT--TACAGGGAC----TCTACAGAGACGTGAAAAT---TGAATTCCCAAGGCTTTTATCTGCCCTTCTCTCTGAAACTGAAAAGTACCTTTTATTTTAATGCTTTAAATTTTGGTTGATGATGATGGTGTGCTAGACACC-----ACCACATTACATGTATATTCGTTTCCTTTGAGGGTA-AAATCCCACTATAAAAGAGGGGTGAGACAGTACTCAGAGGCCACAGGACCAGATTAATTATAAACCTAGCCAACTGAACCTGAATTTTGTTCAAATACTTCCTGTCTTTTGTTTCAACCTGCCATACACCTTCAAGGTTAACTGCAGTTTCCCTGAGCAACGGACCAGCCCACTCCAAATTGGGAGATGGGGACTCCTTCTGCAAAGGCATTTACTGACTCCTCGGCACCATTTCATTTGAAAATATGGTATTATTCAGTGACTGTCAAACAATACACACTGCATTCCTACCCACACAAGGCCAGCTCTGCTG-AAAGCTAACACACCCACCTTGCTATGAAATAT---GCGGATGCTTCCCTACTAAGTTCTCAAGAGAAGAAACCGGGTAGAAAGCAAAATCGAAAGGCAACTCAAACCTAAAAAGCCCCTAAAAGCTGG-----TTTCTCCCAAAAGAAACAGAAAGGGCAAGAAAGGTACAAAGGGCGATGGGAAGAAGATAATGTATAATTT---------------------------AAGCCGGGGAGCTTTCAACACTCAGAAAGAGAATACAGGATCTG----GGGAGGCTGTAGGAGCA---------ATCACAGGCTGGGGGATGGGAAG-AGCTAAAAGAGGGGGAAAGGCCGCTTTGGCTGTTGGAGGTGTCTGTCTGGGTTTCGTCT----TTTTTTCTCCCCCTCGCCCATCCCTCATAAGGAAAACGCTGGTTTGTGTGTGTGTGTTTAAATCTTATACAGAACCCTAGTTCTGGA-CCCACGCTTGCCAGCAGGGACAGATGTGGGAAAGGATGTCTGAATTCGCAGGGATCCAATATAGGGGTGGGGGCTGCAGCCTAGAAAACGGT-ACCCACCAGTACCACTCTGAGGCTAGG--GCTGGGCAAAAGGCGACCTAGAGTGAGACAGGTCAGG-AGGAGACCCCTGCTGAGGGGC-GGAGGCTAGCGAGAGACAATGAACAATCG-TAAAGACCCCGGAGGATGCCGCGACGCCTCCTTGGGGAATCCCGGGATCTGGAGGCGGCGGCCCCGCCCCCTAGGGGGACCATCC-----CTACCCCGACAGGGACTTCTGCTGAAAGCCACTCACGCTCCGGGCCAGGAGGCTCTCTCGGAGACCCGGCTCCCCCGGCACCGCAGAGCCCCGAGCCCA-CGCTCCGTACCTGGCCTCGGCGCTCCGGGATC--CTTCC--CCGCCGCCGCCTCCGCCGCCCGCTCCCCATCCCCAGCCTCCCAGGACCC--GCCCCTTACCCGCCGGCGGCAGTGACAGGCAGATACCCTCGCCAATCATAGCTTTACCCTTGCGGCTCTGAAACCAATCCTCGCCGCCTGAAGGCGGGGCTTCTCCAAAGTCATCCCGGCTCCTCCTGGGGCCGCAAGATCCCTTTTGTTTGG-GAGAGCCAGGCTGGGATTGAGCTGGCGTCACTTCCGGGAGGAAGTACCCTCCTCTGGTCC--GCTGGAGTCTGTGCTCGCTCTGGTCTCCGCCCGGGTTCTGCAACTTTT---------------------CAGGACCCTGGGAACAC---------------------------------------------CTTGTGGTGGCTTAATTGAGGGTTTATCTAAAATGTGAATAAAAGAAGTGAGTTTTAGCGTTTGTTTTCGAATTAG-TATTGAAAACCTAGTAACGTGTCTTCTTTGCCCCCCCCCCctctctctctctctctctctccctctctctctctctctctccccctTGGGTGTGGTGCTGGAAAGCAAGGGCG-CAAG------------------ACCATCTTCTTTACCACATCACACTATGTACACAAAGGG------------AGACGCTGGGGTGGAAGCACCTGGTAGAG---------AGCATAACCCCTACCGACTTGCCTTTCAGGGCAAAGCCAAATAGCTGCAAACTTACCTGGTGTTTCCCCACACTG--TGCTTGCCATTCATGTATGTGGGGGGCTATTTTATATGTTTGGGCCCCGTCATACCGTGGACCA--TGCATTTGTAACGAAGCCGAAAC--GGAACAGTAG--GATGAGGGGAAATGGCTGGCCTCTTGAGCACAGGAATGCAGATCTTAGTGATAGAAAC---------------AAGACCTGGAGGGAAGAGATTGCACTCTA
s HiC_scaffold_1 115608531 3667 - 233722169 aaacgagacactcaaaaattattttaaaattagcaagCTACTAAAAATTAGCAAACAGTTTCTAGTGTGCTCTCCTAAATTCACTTCATTGATATCAGGTTGggatcttgaaaa-ataaaatcctaaaatgACTACTATTGATTATGTTTATAAGtctgatttaaattttatgacaATAAAA------TTACATAC---------CTATGGAAATTTTCTTATAGGAAATTCAATGTTTTAAAGTCACTTAAGATACTAGAGTTTCATA-----------------AAACAAgataacaacaaaaac-------cagatTGTTTATACTATTA-TCTGTGCAATATTTTATTGG-TGT-ATCctttctggttt-atttcaagGTGACTGCTTTGCACTAAATTCAATGAACACTTATTAAGTTATACACTAAACACTGTATGAAAGACACAAAAACTATATCC--tcaaagaatttataatttaatgagATACATCAGATGT----------------------------------ACACAGAAAAATTCTCTGCATAGAGTACTTTTCTTCATCTAACATAACCAAATA-GACACTGaaaaag------------------------------------------------------acaaga---ggaaagaTGTCCAAGGCTG----------------------------------------------------------------------AAACGTTTATCAATCAGGTCTTGCTTATTATGTGAAATAAGCGAAGAACATTACAGTATTTGCTTTTCCCCCCGTTTTTATTACAGCTCTGGCAATCACCACTACTTTGGTTTCCTTA-GTTTCTTACcttagtttattttctgttctctacTCATGTAATAAGATATATCTTTTGGGGATTTCTTGTTCTC-------AGTTTTTTTGTGT-------------GCTATTTCTGGGGCC-CACATCTTAACTCTCCTATGGCAGTATACTTTGTGTTTGCTAGAGTGACCTGCCATacagtttctt---tgtgttt--tctcacTGGAGATCTGGAAACAATCACTGAGCAGATCTGTAAGCACTGAGAGTGGCTCTGTAACCCTGGAACCTAACTATTCAAAAACAATTACCTTCAGGAAGTCTGTCTTTAGGAAGTGTAATCAGGAAGG-TAAAGACAACAGCCATTACAGTCTCCCTCAGTGATAGCACTTCCTTCCCTCTCACTGCTATCAGCATTGGCTATTAAGATAACAgtagtgaggggctggggatttagctcagcggcataagcgcctgccttgtaagcaggcagtcatagagttcgatccctggtaccgataaaaaggaaaaagaccgaaaaaaaaaaaaaataaaaaaaaaaaaaaaagatacagtagtGAGACGGACTTGAGtattaaaagcaaaagagacaatgctaaaaatatatagaatgttAACATATA--------------AAGTGATTACTAGGGATTCAGTGATATTAATATGAGGCCAAACTCA---GTACTTTGCACCTGCTGAAACTCGGGCTAATTTGACAAAACCTTTAG---GTCTCAGTACAAAGACACTTTTTACTTACACATGTGAATAGCTAGTTTACCATGCTTTTTATTTACCCTTATCtctgaaatttaaaacttattaTTTTTTCCATACTTTAAATTTTGTTACAGAATACTGGCATTGTAAA-ACCGATCAACAACACAACATATGTATTAGTTTTCTCTCAAGGTAGAAATCTCACTATAAAAGACAGGGAAGAAAGCATTCAAAGGCATCAGGACTAGATTAATCATAAACCTAGCCAACTGAACCTGATTTTCCTTCAAACACTTCCTGCCTTTTGTTTCAACCTGCAGTACACCTTCAAGGTTAACTGCAGTCTCCCTGAGCAACAGA--AGCACACTCCAAACGGGGAGATACTGATTCTTAATGGAATGCGATTTATTTACTTAACTATATTGTTTCATCTGAAAACATGCTGTTAT----TGACTGCTAAACAATATACACTGCATTTCTACCCACACAAGGCCAACTCTTGTGTGATATCAACACACCCACCTCATTGTAAAATATTAAGAGAGTGGTTTTTCATCAAGTTCCCAGGA-AAGAAACAGgttggaaaacaaaaatgaac-gtAACTCAAATTTTACGtatcctggggggggggggggtgtcctcAGACAAGGATTACGGAATATAGGGAAAGCACAATGGATAAAGGGGAGGAGGTGGTTAACGATTTCTCCTTCCGGAGTCTAAGAACGTCCAGAAGCAGAGCAACTCTTGACCCCACGCAGCAGACCAGAGGACGGGGGGCGGGGGGCTGTGGGAGGAAGGCTGAGCATCGGAGAATGGGGGATGGGAAGAAGCCAA---GTGGGGGACGGCTGCTTCGTC-GGAGGAGCTGGTTGTCTAGGTCGCATCTTTGATTTCTGCTTCACCTTATCCTTCTCTTTT--GGAAAACATGACTTT----------------ATTTTACGGAGAAAACTAGATCTTGATCCCACCCTAGCGAGCAGGGACAGGTGAAAGGAGGGATGCCTGGCCTCCCAGAGGTACAAAAcaggggtggaggtggcagcTTCGAGAATGGGAACCCGTCAGTTCCCCGCCAAGGCTGAGGCGCCGGACTGAAGGGGCCTTTAAACGCCTATAGTCAGGTGGGAAGCCCCTTCTATGGAGCAGGGAACTAAGGAGCGACAATAAGTAGCTGCTTCGGTTACTCGAGGATGCGGAGCCCTCTCCTCAGGGAATGCCAGGAGGTGGAGG-GCCGGCCCCGCCCCCTCAGGGAAGGGCCCACCGGCAGTTTGGACCGGGA-------GGGAGACTACCCCTGTTCCTGCCCTTGCTTTCCTCTTGAGAACCCAGCGTCCCCAGCCCCGCCAAGCCCCAGCACCATCGCCTCCTACCTTTCCCCGGCACTCCGGGATCCGCTGCCAGCCGCCTCCGCCTCCGCCG-CCGCTCCCCATACACAGCCTCCCGAGGCCCCGCCCCCTCGACTACCGGCGGCA-TCATCGGCATTCATCAGGGCCAATCGTCGCCTCGCCTCTCCATCGCCGGCACCAATCCGCGCCGTCTGGAGGAGGGCCTTTTCCAATA-CATTTCAGCTCCTCCCAAGGCCCCAAGATCCCTTTTGTTTGGAGAGAGCCAGACCGGGATTGAGTTTGCATCACTTCCGGGAGGAAGCACCCACCTCCGGCCCAGGCTTGAGGGTGGGCACCCCTTTTTGCCGGCCTACGTTCCACAACTTTCCTACTGTGGGAGGTTACTCGGCTGGGTTGTGGCAACACCTTCGTGTTTTACCCTGACTGTGCGGGAAGCTTAGGAATGGTAGGCTTCTGATGACCCGATTGCAATTTTATTCACAACGCTAATAAA-----TGAGTTTTGGTATCTGTCTTAGAATTAGTTGCTGAAAACGTGGCA----TTCTTGTtcg------------gtgtatttttttttctttccattccagACT---------GCCTATGGTTGTGGTACTGG-AAGCAAGAGCGACAAAATGAGGCGACTGGAGAGCACCCTTCTCTTTTCCTACCTACCGTGTGGGGGGAAAGGGTTCTGGTTCTGAAGCCTCTGGGACAGAGACTCCGGAGAGAGCACTCTAAAGGCATAAACTCTGTCCACCTGCCTTCCAGAGAGAAGtcaaataattacaaatttgTGTGTAATTTTTCCAGACTAATTGCTTGCTG-----------AGAGGACTTTTCTGTCGTATTGG----------ACTGTAGGGCAGTGGCATTTGCGGTGAAGCTGAAACAAAGGACAGTTGTTTATAAGGGG---TGTCTATACTTGTGAACACAGGAATGCAGATCTTGGTGATAACAGCCCTAGGCAGTACTAAATAACCTGAAGGGAAGAGAATGAATCCTA

a score=18716
s chr3           105058983 659 + 160039680 GACCTGAGCGGCCGGGGAAACAGGCGCATTCCTAGATTTTTGGGTGTGGCCCTCACTGCTTTCCTGAGCTTATTGCGCCCTCTAGTGTTGATCGGTGAGCCCTGCAATTGTCTACTTTTCAGGCAGTCTCGTGGTGCGTTGATAGCTTTTCCTTTTATGGGTGTAGGCAGAAAGCCCATCAGGTAGGGGATTCCAAAGACTGGCAGGCAGCTCAAAGAGCCAACTCCAGGAACAGA-------------TTGGTTTTTAG---CGGAACGTGGCCAGTGTGATTATGACGGAGCCACACGGACTTTCCTTATCCTGGATTGCAGTGAAGGTAGTTCTCAGAGAAGGAAGGAAAAAAACCtattgagtatttactatg----agacactgagccagacactttgc-----------atatacaccgtgtaatcttcacatgtataattctcataacca-cctgacaggtatatattactacttctagcttttcaagagaagaagcaagttcagagaggccagccagctggctcaaggtaac---------------GTGATACCCACATCGTACCAGTTACTAAGTGTCGACTTCACACCAGGTACAATGCGTTGGTTATCAC-CACAAGAAAGCTTTAAGGTCCATTTTGCTGATTAGGTAAC--AGATTTCAATCCTTTAAAAAAAAAATAGTTAAGTAGCTTGCCTG
s HiC_scaffold_1 115615263 678 - 233722169 GATCTG-GCGGCTGGAGAAGCAGCGGAGTTCAGAGATTTCTGGGTGTGGCCCTAACCGCGTTCCCGAGTTTATTGCTCCCCCTAGTGTTCAACGAAGAATCCTGCGGCTGTCAGCATTCTTGGTCATCTC-TGGT-CtctgatgatttttccttttatggttGTGGGCTGAAAGTCCAGCAGGTAGGGGATTTTA---------AGGTGGTTTAAAAAGCCACTTTgaggaacagattttttttttgttttggtttttaggtACGGTCCTTAA-CAGCTTGGCTATGATGGAGCGGCAAGA------TTTATCTTGGATTGAGATTGAG--AGGTCctaaaggaagagggaaagaaat---ttGAGGGCCTACTCTatgtcaggcactgtgccaggTGCTTTCCCTTCATTATATCTGTAATCTTTGCAATGTTCACATATATAATCCTTATAGCCATTCTGAGGCGTAAttgtta----ttttagatttttaggCCAGCTTGCAAGTTCAGAGAGGCTAAGTATCTTGCCCAAAGTAACATAAGTacaaaaacaatgataacaatatCA-ACCA-TTATTAAGTGCCTACTTTGGCCCAGAGGCATTATTTCTTTCAACCCACACAGCAACATTTCAAAGTTTA-TTTACTGATAAGTCAACTGAGATTTAACTAGCTTAAGAAAGGAACAACGAAGAAATTTGCTTG

a score=40725
s chr3           105060870 1872 + 160039680 CCTTTCTGCCTCTACCTTTCTTCCTCCTCCCAAGCCT----------------------AGGCTAATCCTT-TCTGTCCCTGCTGG-------------GCTCTG---------GCCTTGCCA-AGGGGTTAAAGATGGTCCAAAGGCTGGTCTTCCTCTCCTTTCCTCTTTATTTCCCTCTTCTCCCA---CACACAGCCTGACATTAAGCAGAAAATAATTTCCACTCTAGGGCCGGAGACAGAGCTTCTGTTGGACCAGGCTGCTCCATGGTTTTGATTTGATGAAGGCCAATTAGGCATTTCCTCTGGTCTGTTATTTCAGCTGAAGCACCACACAGTTGGCTGAATGGGTCCTTGTTGCTCGCAAAAGGGGGACATATTTATAGGGAAAGTAATGGTCCTGTTATGGTTGTCGGCGGTACCGTCATTTCTAGGCAATTTCCTGGTAAGT-GCCCTTTGGAGCAAGCACATGCTGGAAGCATCTACGCCCTTAGTTCCTGCTTCACTGCTCCTGTTGGGTC-CTATGGGGCCCCCATCTGTCCTGAACAAAGTGA-CCAGGATTTCTGTTTCTTTGGAAGGAGTTTGAATATTACATGCCCCCCTTTCTGTTGGCCATGTTGCACTCTGTTTTTCTTCTTTTCACTCTTGAAGTGAATATTTCATGCCTATTCCCATTACAGCAGT-AACCACCCCCATCTCATTTTGGGACCTGGAATACCCAGGACTT-----GAGTTAGACTTGTGTAACTCGCTGACCCCAAGAAGTTCTGTTTTCCTGCAGTTATGCGTTCCAAATAAAATAACTCAAGCCACTATCTTACACCATAATCGGGACTCATGCTTCCCAAATAAAATAACTGAAATCATTATCTTACATGGtgatcagacctcctccagatgtaagggacagcaagctctggccaaactggcccaaggaaaaga---------------------------------ggtttttattggc--------------------------------------------------------------------------------------tggtgc-----aatggaaaagcc-tgtgaaatttgacttcagatgtggcttgatctagcttcccaaaaatt-taccaaggtcaagtttctctttgtgtagcctgagactctgtctcctgtgtgtggggttctgttctcagtcactctttc--------TTTCTTCATAGGTGACGGGCA-CTGTGGATCCCATTTTATGTATGACCCTCCACATTCAATGGGTAGGATTACC-CACTCTTTCCCAGACTGTATCTGTGACTGGACTTAATCCCCGTGTtcctcctcctcctcctcttcctcctcctcctGTTGATGtttcagatagggtttcactatgtagcccaggctactatggaccttgttatgtagcccaggcttatctttaattcacagtcaactgcttccagttcagaagtgctcagactataggcaaggcttgtgctagcatttatacattcat--gctgatgactggggCTGGGGGCTGGGCAGCCTTCATC-ATTTGATCTGTGTCATAGGCTC-------CACCAGGAGATGTAGTCCAGATTGGTGAAAAGATACCACCTCAAATAAAAATAAAGATAGCTATATAATAAAGATAAAGATAATCACAACCCCccatctattgtctat-aatc--ctatatacctacctattgcctgcccatcatctacctatctatcatctctgtctatctgtcCCTAGAAACAGCAAGAATGAATGTTTTGGAAAGCAAACTGTGCCTGACACACATCTGAGTGTTTGTTTTGCGTTTGTTCTCATGTCAGTCTGAGGTACAG-CTGCTACCCAGCTGCCACCTGACCCCTCACCTTGTCTTGCCTCGGCCTCAGCCTGGCGTTTCCTTGCTGCTGATCACTGTCATGATATTTAGCCTCCCTCAAC-TCGTCCTTTCTTGCCCAGAGACCCATTGATAAGA----ATTGTGCATAGCTGACTTTTACGGGGCCTGAAAT----GGATGGGGATGGGAGATACT
s HiC_scaffold_1 115618166 1846 - 233722169 cccttttctctctgtttgtctTCCTCCTCCCGTGTTCCAGATGCTTGCTTTCCGTGTGGAGCCTGATCCGAATCTGTTCCCACTGGCTGTTCAGACAAGGCTTTGAACTGAGAGGCCTTGTCAGAAAGATTGAGGCCGACCCAAAGGCT---CTTGCtgttccctctctttc--tcccctgTCCTCCCAACACACATAGCTTAACAGTAAGCAGAAAGTCATTTCTGTGTTATGGCTAGAGACAG--TTTTGGCTGGGCCAGCCTGCCTTATAGTTTCAATTTGATGAAAGTCAATTACACATTTCCTCTGGTCTGTTATTTCAGCTGAAGCACCACAC--TTGGCTGAATGGGTCCTTGTTgctcacaaaaaggaaaaatatttgtagGGAAAGTAATGACCCAGTTATGGCT-------GCACAGTCATTTCTAGGCAATTTCCTGGTAAGTGGCTCTCTGGAATAGACTGATGTTGGAAGCTTCTATGTCCTCATTTTCTGTTTCACGGCTTCTGCTGGGCCTCTGTGGGG-TTTAGTCTGCCCTGAGCCAAGCGACCCAGGATTTCTGCTTTTGTGGAAGGAGATTGTATGTTTCCCATCCCCTTTTCTCTGTACCACCTTGCCATTCTTTTGTCCTCCTTTTTTTCCTAAAACAGTCATTGAATGTCTATTACCACTACAGTGGTAAATAAAACACAATTCTGTGAGGACCCCAGGGCACTCGCAGCCTGATGGGAGGTAGACTTAGGTAACTCCCTGACCC----AAGCACTCCTTTTTTGTAACCATGCAGTCC------AGTAACTCAAACCACTATCTTACTTTATGATCAGGGCTCATGTGTTCCAAATAAAATAACTCACATCACTATCTTACATCGTGAAAAGAACTCCTCCAGATGTAAGGGACAGGAAACTCTATCCAAAGAGACCAAAAGCAGCAGTTtcgttttgtttcttttcttttctttttccttgctttttctttccccttcctccctccctcccttcctcctttccttccttccttccttccttccttccttccttccttccttccttccttcctttcttttttgtgctcATGAATGGAAAGTCCAGGAGTAGTCTGACTTTAGATGAGGCTTCATCTGTCTTCTCAAAAATGATACCAGGGCCTGGTTTCTTTCCACGCATTTCTCACTTCTGCTTCCTTTGTGT-TAGTTCTGTtttcagagatgcttttctccttaGTTTCCTAACCTGCCATAGGCAGCTCCAGATTC----------ATAATCTGTCATATTCGATCAGAAAgatcacctttttcttttccag---gaatCTGATAA------AAATCCCATTGTATCTCTGCCTC-------------------------------------------------------------------------------------------------------------------------------TGCTTGGTCTACTGGT-------------GTATGTGTTCATTCTTCAACCGGTGATTGTGCCCAAGGGATATACAGTTTTGAGCAATTAGATCTAGGTCATGTGTTTGCTTGGACACATGGA----TAATTAACAT---TGAAAAGCTATACCCTCAAATAa----atgaatatctat-----------------------------ctatctatt-tctatcaatcatctatttatctatcatttGTGTACCCACTGtgta------------ttctatttatttgttGTCAAAATAACTGGGGATGGATGTTTTAGAAA-CAAACTGT--CTACTATACCTTTGAAGGTTTCTTTAGGTTTTGCTCTCAGTTTGGCTGATGGTGCAATCAGCTTTCTACTTGTCACATGGCCCCTAAACTTGCCCTCACTTTGCCTTGGCCTCAATTTTCCTTCATACTGATCACTGTCAGAAACTTTAAGATGCCTGGTCATTATCATTTGTTGCCCAAAGCATCACTAGCAAAAGTTTGTTGCACGCAGCAGTTTCTCAGAGGATTTGGGGTCTCAGGTGTGACAtgggaaatgtt

a score=30212
s chr3           105067437 1087 + 160039680 aaaaagtatttcttagctcatgggattgctttggacattaagtaggtttgtccttacaatcttggaataaagtaactgctacatgaataaAATAGCTTATTTTACCTGGTGACCaacatgaatacttctgaaggtggaaggatgctgttatcaatatggcaggagaacaggtgtgagccagg-ctgcccttggaacagaggggcatttggtcacACAC-ATATAAAGGATCGTTAGGTAAATAAGTGTCTTCATATGTGTTGGTCTTAGTCCCTATTTTCCTTGAGCGATTAGCAGTAAACTCTTCCGACCGTAAAAACCTGTGTATTTATTGTTAGGGATAAAAGAGAAAGAAA--GAAAGAACTGGGCAGGAAAGTCCAGTGGATTGGAG---TACAGGGGCCAGACAGGAACAGAA-TGAAGACACACACTTAGGTGCTGGGTGGAGGGAAAGCGGGAAGTCTTCCCACATCCCACAGAGGCAGGGCGGCCAGTGTGTTTGACAGTGGAAGGCAGG-GGCCTGCTTCTGCATGGTTGAGGTTCAGGG---------CTCCTCGAGGCCTCACCTGGAAAGAATTCC----CTGGGAATTCTGTGCTGATCCTGTTTGCCATGCCGTTGCTGTCTGCTTCCTGGGTTCCTGGGTTTGCTGCTTTCCCTCAAACTGTT-CAGAACCATGCGGTTCCATTTGCTCCCCCAACAGGAAGTGGTTTTTCATTACTTTCAAATAGTTGCTTTTATGAGCCGGGATAAACACCTGGTGGGCAGAAGTTTTATCACATGGCCACTCCAATTTGAATTCCATTATTTCTCCTCTTTACCTGGAGAGGGAGAAAATATAACTTCTAAACACGGTTTTCCTTTTTTTTCTGGCTTCCAAGAGAGATGCACCATCAGATAACAGCATGTCCGAAGCTGAACATATCTGCCTGAAATACCCACTGCTCCCAGGTATGGTGG-TAGCCATGTTGCCACAGGGGAGGGGAGGGAGAAAGCCA-----------CTTAT-GTGCCATTCAGAGATGTGCATCAACTTTGTTCTCACCCTTTCTCCGGGAAATGGCTAAAGGTGGCAGGGGGGAGGAGAAAGAAACAAGAGAACGAG
s HiC_scaffold_1 115630692 1025 - 233722169 aaaatgaatttcattGT--ATGGGATTATTTTGAGGATTaagtaagtaaatatatatatgtctG---TAAAGTAAATTCCATACAAATACAACAACTTGT---ACTTTATGACAAACATGAATCCTTTTAAAGTGAAATGCATGCCTCTA---ATAAAGCCAGAAAATAGGTGAAAGCCAGGATTGTCTTGGGCAAAGAGGAACGTTTGATCACTCTTTATATAAGGGCTCTGTCAGTAaa-aagta--------------------aatcttttttttttcctagtgatTA----TATACTAATC------------------TACTTATCCCTAgggacaaaagagaaaggaactgGGGGGACAGTGTGACAAAGAACAGAG--TTAAAgcattaaaacagcattaaaaaaacaaaaatgaagttgAATGCTTAGGCTGTGGGTATAGGAAAAAAGGGGCACCTTCCCACATcctgctgaggcaaaatatcctGCAGACTTGACAATGCAAGCCCTGTGGTCTCCTGATGGGTGGTCAGGTTTCTGAGGCCCCAGCTTTTCCGGAGGCCTCATCTAGGAAGGATTTGTGAGCAAGGCAGCTAGCGCCGATCCTGCTTGGCATGCATTTGCTGTCTGCTCATTGAGTT--------TACTGCTTTTTCTCAAACTGTTTCAGAAACATGTGGTTCCATTTGCTTCCCCAACAGGGAGCGTTTTTTCATTACCTTAAAATAGTTGTGTTTTCAAAGTGGGATAAACACCTAGCGGGCAAGAGTTTTATTGTGTGGTCATTTCAATTTGAATTCCATTATTTCTCCTGCTTACCCTGGGAGGGGGAAAATATACCTTCTAAACAccgttttc-----ttttttggtttcttaGGCAGATACTGCATCAGATAATAGCGCCTCAGCAGCTGG------CTGC-----ATACCAATTCCAGGCAGTTCTGGTGGAAAACAATGtt--------ggaggagagggagaaaaagagagaaactgtTCTTATCTTGGTGGACTGAAGCCTGCG--------GGCCTTTCCCCTTCT--GGGGAAGGAGTACAGGTGCCAGAGGGGAGGGGGAAAGAGTAAGAGAACAAG

a score=40990
s chr3           105084325 2854 + 160039680 ttttaaagagca-aatat-tttgatttttggtgaagcccaatttatttactttcccttttacagattatg-ttttgatgaaacatctaagacatattt------------tccataacatttttcttttatatatatttctagaaggtttttgtgtttgtttagttttagttttagatttcacattcagatctgtggcctatcttaatttttatcactcatataatatatatggtatgaagatcaggattaaaattcattttagtttttgcatgtgaacatccaattatttgagcaccctttattgaaaattctattttttcttct---ttgTCAAAATCTAGTACCCCCCCACCTGCATATTCATATATA-----TGTTTAGTATATATAAGTCATTCATTTTCTTGCTTTTTAAAAACAGGAGACACATGACAACCTTAGAAACCCAACAGACCACATCCACTATTCATTATGAAGCCTTAGTTATAATTTTACAACTTCAACTTTTT-----GGGGTTGTGGTTAAGTCCACTAACTTC----TTGGGCTGTCCATCACCTTAAGATTAGGATGAGATTGTC-----------------------------------TCAG---------------------------------AAGGCTGG-------------GGGCC------------------TTTGCCTCATGGACCACCTTCT----------GGTGAGCTGCCTTCGAAGGACGAAGGACGCACACTGGAATTTCTG-TTTCTGGTTGAGTGATCTGTTCT---AATTGTC---------ACACCTGGCTTCTCACCAGGTCTCAT-TAGTTTCCTTCTTTGATGTCCTAAACTAAAGCCTTAATAGCTCTAGTCAATCTAGTCCTTGCCCTGGGATATGAGCCTGCCTGAAATACGGCCCTCTT--AGACCAAGGATGGGTCTTTTCTCAAAGACCATCAACCCGAAGGGAGGAAATCAGTCAAAGGTCATGTCTTGAGACCCCAGATTTGAAGTGGTTTGGTATCCTTAGAGAAATATAAAATATTTAACTTATTGGCTTAAAATTTtct-attacgatataattcatataccataaaatttaccctttaaaagtgcacatttcagtgatttttagtatatccagaaagctgtgagcccatcaccattatataatttcagagca-tttcatctcctt-aaaagaaaccccagacccactgagcagtcactctgcatttcctcttccccctagttcctggcaaccatgcaaacccacagtttgtatctcaggactggccattctggacatttaatatagatgggatcacacagtgtgtaggtttttgtatctaacttcttcactt-------tacttttgagcttcaccatattgtataatgcataagaactccattcctgtttatggctgattaatattttattggtgtcaatataaagtttatctt---tttatccgtttatcaattg-----ctgaatatttttctattttt---tttaagtaaatggtgtgtctgtggacatttgcatatgagtttttatttggacagatg-tttcagttcccttggatacacagctggaaactgagctgatgggtcatatggcaactattatagtttaatttgaaatgttttccacagaattaggctgtgagtgcttgtttcctagctagtgattgttcctattttgaaaggctgtggaaaatctgggaagtgaggccttgttggtgacaatagatcaccagggccagccctttgaagatcacatctaatacctgggtcatgagttgtttgtttcctggcccgccatgatgtgaacagcttccatctccaccagacttgccagctgccatgatttgaactgctctgtcatgtgttccatgtcaaaatagacagagtcctctgaaaccaggagctacaataagtcttccc-----------ccactttcatcacatctgtcaagtagttttgatcacagtgacaca---aaagtaacCAGTACAAACTtctattgttaactgtctgaacaattgtctgaactgtg-ttccaaagtggctacct-----tgctttctagctggttccaatttcct-------cccatgctctctaataccttaatgcctg--tTATTGTTACtattttttaaagacagagtcttactatgtagctctgggag---atatggaa-----------cttgctatgtagtctaggtttgcctaaactcaacgatctgcctacttctgcctctcaagtgctaga-actgaa-----------gaaacca-gctaccatgcccggTCTTTAAAAAAATTATAGCCACACTAAGGGGAATGCCATCATGATTTCTTCTTCTTTTACATTTACTTATTTACACCTTCATTCAtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtAgaggtcagagg-----acaacctgtaggagt-tgcttctctcctttgctcatgtgtgtGTTTACCACTAAGCTGAATGGCCCTGCCTGtcactgtgcttttgagttg-----------catttccaccatgacgaacatggctgaacatgagtcttttcacactcataacagctatttgtatattttcttcagaaaaatttccaaattctttgcttatttttaattcagtttcttaacctttatattgttgagttgtgggagctaattacatattacagacactaatttctcatcaaaca-------------------cagtttgtaaa--------------------------------------------------------cacaactcctgttcgtagccagtcttttcactctcttgatgggatcctttaaagcatagaagggttttctttggatgaagctccag--gtattctgatgattctcct------ctgtagcttatgAGCATCTGCTTTCTACAGCCA------GGTATCAAAAGGCTTCCCCATTAGGCACAGCATACAGTGAAACTACAGTGCTCAATTCTATGTTGTTTCAATGAAAGGAGTGGAGTAGATTAGAGGAAAAGGAAGAAAGTTGGGGACATTTCACCTGGAATTTAGATTTCTAAGTATGGTGGCATGTTAGCCATTGTTTTGTCCAGttaaaat
s HiC_scaffold_1 115654208 2846 - 233722169 TTTGAAAGAGCacaatttgttttagttttgaagAAACTCGATATGTCAGTTTTTCCTTCTATGATCTGCGATTTTTTTGCCATACCTAATAAATCTTTGCCTAACCTAagttcataaaatttttcttcttt----------------ttttcagctttttttccCCATAGTTTTAGATTTTGCATTTAGATct-caatccattttgattttcat----------------atGGTAC-AATACAAGGATTGAAATTCAGTTTTGCTTTTGTATATGGATAGTCAAT-atttcagcaccatttgttgaaaattcTATCTTCTCCAATGAGTTGTCA-------------------CTgcacttttgtaaaaaaaaaattttatttgcctATAA-Ttatagaccttttttttttttaaa----gaagatac-tGATTATCTCAGAG-CTTAATGAATCCTGTCAA-TAATCTTTATGGAGACTTAATC----CTTAACAGCCTTGAATCCTTTCATGGGATTTGTGGTTGAGTCCA---GATTCGTAATTATGCTGGAGACTGGTGTG-GATAGGGATGGAATTATCCACGTAGACCAgtaaagttttgtattttttttttatcagtaccagggatcaaactcatgaccatgcacttgcaaggcaggcgcttacgctactgagctaaacccccagctccaagTTTTGTATTTTGGATTGTCTTCTAAACCTTGAAGGTAAATTGCCTTTGGATGATAAGGA---TAGACTAcaatttctgctttctgtttgaCTGATCTGTTCTCTTAATTGTCTTTACTGCCACATCTGGCTTTTTATTAAGTCCCATCTAACTTTCTTCTTC----CCTTAAACCAATGGTTTAATGACTTGAGTATGGGTAGTGCTTGATCCGAGCCAT--------CTGAAATATGAACCTCTCTAAGACCAAGGATGAGTCTTTAATCAAAGACCATAGACCCAGAGGAAAGAAATCAGTCAAAGGTCACATAATAAACTACTTTAACTGAAGTGGTTTGGTCTCcttagagaaatataaaatactgaGCTCATtggcttaaatttttttcattgtgacataattcacataccataaaattTACCCTTTACAAGAGCACATTTCAGTGACTATAAGTGTACTCAGAAAGTTGTGAAACCACCATAATTATCAAAGTTCAGAAAATTTTTATCTCCCTAAAAAGAAGCCTTCTATCCATTAAACAGTCACTCT--------------TCTCAGGCCCCTGCAACCacttttgtcttctgtttctat----GGAGTTACCATTCTAGACATTCAGTATAAGTGGAGTCCTACAACGTAAGAccttttgtgtttgatttcttcAGTTAGCATAATGTTTCTAGGATTATCCATGGTGAAGCCTGTGCaagtacttcattcctttttatggatGAATGATATTCAATTGGCATCATTATA----CTATctttgctttatccattcattagttgaacacttgaat-tttttctgcttttcaactCTTATGAATGATACTACTATGAACATTTGTTTATAAGTTTTTATTtgaacatatgttttcatttctcttggatatATACCTAGGAGTGGAACTGATGGGGCATATAGTAact-------ttttat----------------------------------cttgtttctgaG-----GATTAACTC--------ATGGTTctgcacatgctaggta----------------agcactctaccacc-gaGCTAGCCCTGCTAACTCTGTGTTTAAC-------TAATGAGCTac-----------------------taaactgtttt--------ccaaagt----ggctgcaaTATTTTAATCTTACCAGTAGTGAGT--------------GAGAGAGTTC-----------------CAATTTTTCTCACCCTCTCTAGCATCCACTATTgtccc--tttttaaataattttaatcattttagtccATGTGAAGTAATAAGTA---------ATTGTGGC---------------TTTGAAACGCATTTCCTTAGTGGCTATATGAGTCtacttactagagaaacagaattaatTGAAGATATGCAAACATATGAGGATTTATAAGATTGGCTTATAGTGACtgccc-------acagagtc---------aggtgtggaagcgTACAAAGAGCAGTCTGCATTCTGGAGATCCAGTCAAAG--tgctggagctcactgtagtgtccTGTGTTAATTTGTCTATGATGGAGGCTGAAAGTCTGTGTTGAAAGCCAGGAGACTATGTCCAAGATGAAAGTGAAGATTGGCCATTTTCTGAAGAA-ACACTAGTGaaccttccttctt---catttcctt-tttatttctccaggca-------------------------acaagcctattggttggagTCATTCATACTCCGGATGAGTCTCCTGCCTTCAGTAAATCCCTTCAGTAGCCAGAATTATGCTGATCCAATTTAAATGGCATTTCTTATTTGAGTTGACACAGTCAGTAATTGTCACAATGGCtaatgatattgaaca----tctttGCATATTCAT-ATGGCCATTCAtatattttctgtgaaaaaacattcaaatgcATTGC-CATTTTAAATTagatt-----gtctttttattgtt-agttgTAAAAGA----TATGTATTGTGGATACTAATcatttatcaaatataaaattatataagtcTCTCACTTTGtgaatctttttacttttttgtgttttgaaccCAGCAATGTATGCATGCTAGTCAAAAGCTCACAGAGCCACATCCCAGC---TCTCTTTTCACTTTTGATAGTGTCTTTCGGGTCACaaaagttcttaattttaatgaagtccaagttgtatactgtttttttttttttgttgttgttgcttgtaaTCATCCACTTTTTAAAGTTAACACAGGGAATCAAAAA--TTTCTCACTAAGCACAACAAATAGTAAAACTAAATACCATAATTCTATGGTGTAGCATTTTAA-GAGTAGAA-AGAtatatgggaaaggaaagaaatgagggAGAATCTGCTTGGACCTTAGATTTTAAAGTGTGGCTTCATGTTAGCCACTGTCTTTGCATGTGAGAAT

a score=38348
s chr3           105087769 2249 + 160039680 TTAGCTACTGTCTTTGAGCATTAGCATCTAATCACAGAGGTTAAGTTACTCTTTGGGACTTGCCCGAATTCTTTCTAGTTTAGAGGCTTTGGACCAAATGAAGCTAGAGC-----ACA-------CAGTCTCTGCACTAC-----------------CCAAAGACTAGTGAGGAGGAAGAAATGTCAGAGAGAGGATTTGGGGGCTAGATTTGTGTCCGTGTGTCCATGTGCATGTCTGTGTGCATGCGTGTGCGTTTCTAGCTGAGGACTCTGAGCCAGGTGCTGAGTGAGACAGACTTAGGTGTACACAGGGGCTTGACAGTCCTAGGAGGGAAGGAAGCTGAGGTAGCAGGTTGGCT----------TTCAGTGGGTGATGCAGTCCGGAGGAGGCCCTTGCTGGTCCAGTGGCTCAG--------------------------CCACTGGTGGGGGGGGG--------------------------------GGGGGGCACCTGTAAAAGAATT----------CCCTAAAGCTGAGGTAGCCTCCTATGAAGCAAAACCCAATGGATTTGGAGCAA-----ACCGTCAGTGTTTTGATATCACATGAGTGTAGAATCGTCAAGTCTGCCCTAAGgacagacctgaggttcaaattccagcagcagtggacttcaggtgacttttctgcctcactttccctgtctgtaaagtggagaaaatatttccctacagggtgatgggaagatAGGACAAGGGTGATGTTgggtgtggtgactcataccgggcgctgggaggctgaagcaggagggtcaggagtgggagatcaggctgggctacagagtgagatgctgtctccaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaCCCAAAAGGACAAACCCGGCTTAGCACATTCTCTGTCACAGTGCAGACACCAGTCAGTGTTCTTCTTTGCT-AGGTGGAAATAAACCAGGCCAACA-TCGTGTTCTCTGAACCAGTTCCCACCCTGCTCATTTAAAGCCTCATTTCCTCCCAGGCACCAGTGTTATTTCCCCCATCTTCTGGATG----------TGTCCCAGGACCTGTGGTGTGCCCTGACTTGTTCATCTCATGATCTCAGCTTGGAGACTCAGGACCTCCTTGGCTTTTGACCCTCCCAGATGGGTCTACCCAGCTCCTGTTCCTGTGAGATGAGGTTATTATTTTCTAGAATATACCAGAGAAAGAATGGCCAAACTGCATCTCTTACAGCTATCTGTCAGCACATCCCACCGCACATCCCACCAGGGATCTTCCTAAGGAGAGACTGCCATGTTCCCTTTGTTAAGTGCCTCCCTAAAAGCCTAGGACAGAGTATCC-TGCCTTGTGTACTCTGCGAAGCAGGACAACGCGTGGTTGGCTAAGCCAGGTATGTATTTTGTGTGAGTCATTATTCGTCACCAGGGTGTT--GGCCATGGTAGGGACACAGGTCTCCAAGGCCCTAT-ACTTCTCACATATATGTGATTGGGTTTGATTTACTGGGTTGTGTTGACTCCTTGAGACATGAACACAAAGCAGTTTTGTT-ATTCCAGTGGCTGCTGCCTGCACTCGATGTGTATGGTACAGGTCTCTCTCCCGCTGAGAAGCAGCTCCCTTCAC--CATCTGTGCATG--TCCATATCTTCTCAGCCACTTTCACCCACCACAGTGGTCTTATTATGTTAATGAAGACACAGTCTTTTA---TCTTAAAGATGGCATTACAATTTTTAATTCAAGCTTTTCTCCTTCCCTTTTAACA-----AATGCTGGAGTTGGTCCACAGCTGTTTGGAGCAGTGGTTGAAAAATGGGGTTTGCTTTGGAGGCACCCTGTCACCCTTCTTTTTGAGGCCTAAGTGCCTCTGGGCAGAGTGTGGGGGGGTGAGGAATGGTTGACTTCTTTACATGACTTACAGGAAGGAGCAACTGTCCTTTACTCCTTCCTAGTTCGGTATGGCTCTGCT--------GGAGTTTTACAGAGCTTTCTTCCCAAGCCAGGACCACCCCTT----CCTCTCCTTACCCATTAGCTGCACG----TTTAACATCACTAGTAATAGAGGCTCCCGGGGACGCCA-----TCTCTGCTATGTGTAGCCAACTCTTAATTTAAAAGCTTCCAGGTAAAGCTGGGCTCTGGTCACTCTGCTGACTTCCGAGCATCACCACATGAAGTCACAGGGTCTTCTGGATGTTCTGCAACAACTATGTGAGAGAC-CGCAGATC-ATATGGGAAGGGCG-TCCTGTCTTCTGCCCAGGCATG-----TTTTAGTAGGCATGTCTGTTGCTTCTGGTTGCAAAT--CAGTGGCCTTCCCACTTTCAGAACCTCTAGGCTTCCGATGAGTAGCGATTTCAATG
s HiC_scaffold_1 115657027 2084 - 233722169 TTAGCCACTGTCTTTGCATGTGAGAATGTGACCAGCAGGGAGAACTAACTTTTTGGGACTTGTTCTGATCCTTATACATTTAGCAGCTTTGGACTAAGTGAAGCCACAGCTACCAACAGAGAGGTCATTCTCTGGATTGCAGCAGTGTTGCTTAAGCCTATAGGAAAATGAGGATGAAgtatgaggaggaggagaacttCGGAG------------------------------GTCTGAG-------------------GGCTGGTCATCCTG-GTTGTGTGCTG--TGAGACAGAGTTGGGAGTGTGAATGGA-GTAATAGATTTAGAAGAAGAGGCAG-----GTGGCAGGTTGGCCACCAGAAATGCTCAGCCTATGATATTGACCCTACAAGGCCTCTTCCAGGCCAGT---TCAGTGCAAAATTGCTTGACAGAGCAGTTTCTATCGGTAGAAAACGGCTAGGCACTGCTGCCTTGATCAACCACCAGTTGGGAGCCACCTCTAAGAAAGGTGTGAATGTGCCTCCAAAACTGAAGTGATCTCTGAAGAAACTACCTTC-------TGGGAGCAACTAAAACTGACAGTGAGTCCTTTATACATGAT------ATCTCTGTGTCTGCCATACACACAGACTCAAGGTTCAAATTCCAGCAGCATGTGACCTTAGACAACCACTCTGCCTTAGTTTCCCCATTCATAACGGGGAGGGACTGTTTCCTTATAACACTGtgggaggattaaat--------------------------------------------------------------------gagacaaGGATGAAC-ACAGTGCTTGATAC--------AAGCATACAAAAA-----------------------------------------------------CTGTTA-----------------ATTCTTCTCTTTCGCCCAGATGGAAATAAGCCAAGGAAACAATTCTGTTTCACAAACAGCTTCCCATCCTGctcttttaaaacttcattttctcTCCAGCCGCTCTGGCAGTTTCTTGGTTCTCTAGACAAGCTGACTCATGGCCCAGGACCTGTGGAGT-------------CCTCTAGTGTTCTCAGTTAAGAG--------CCTCCTTAACTGTTG-CCTTCCCAGACAGGGCCCATTGGCCCCTGTTTGGAAGAGTTGAGGATAGTGCATTTTGGAATATACCAGGAAAAGGGTAAATAAATCTCA-CTCTTTCAGATGCCTATGAGGGCATC-----------------AGGGATTCCTGTAAGAAGAAACCATCATGTTCTTCTTCCTAAGTGCCTCATGAAAGCCCTAGGACAGATTGCCCATGCTTCGCTTACTCTAGGACGGAAGACAGAGCTTGAATGGAAAAG---AGGATGTGCTCTGTGCAAGTCATTATCCTTCACCAGGGTGCTCTGACCAT---AGGGACGCTGGCCTCCAAGGGCCTGTTACTTATTGCATGCATGTAATTGGGCCTGATTCACTGAGACGTCTCAGCTTGATGGAGCATAAATAcaaaacagttttatttcttccagtaACTCTCCCCAGTATACTGTGC--------CAGATCTCTTTCCTGCTGGGGAGCAGCTCCTTTAACAACATCTTGGTCTGGCTCCATGACTTTCCAGTCACTTGCAGTTATTACAACAGTC--ATTCCAGTAATTAAGATTCAGTCTTTTACGTTCTTAAAACTTTCATC-CAAACTTGATTCAAAGCTGTTTTCCTCCCTTCTCAGCAGCACTATAGCTAGAGTTAGGCC-CTGCTGTCTAGA-CAAAGATGGGGAAGTGGAGTCTGGTTTGAGGGTACTacatcttcctcctcttccaggcCT-------------------------------------------------------CTAATGGGGACAATGAAATGTCATTTTTTCTTCCCTGGGCCTGTCAGATTTTGCTTCACACTGGAGATTTTGCTCAGCCTTCCTCCATCACTGAGAACggccctttcctcctcttctctacCCCTAGCTGCACCACTCTTTGGTCTCACCAGTGGTGCAGGTTCCCAATTACCCCAATATCTTGCTTCCCTAAGTATCCAACTCTTAATTCAGCAGCACTTGGGCAAACCTGGGCTCCTGCCCTTCTGCTGGTTTCTGCACATCTCCATGTGCAGTCCTGGGGCCTAGTGGATCCTCTTCCACAACCCTTTGAGGGTCACACAGACCTGTGTGGGAGAGCTGCTCCCATTTTCTTTCTGGTCAGGAAAGATTGCTGCTGGTCTTTCCATTGCTGCTGAATGAACACTGTAGGAGGCTGCTCTCTTTCAGAA--TCAGGTCTGAAAATGGTTACCAGTTTCTATG

a score=88598
s chr3           105092325 3638 + 160039680 CTGCTTGGTTTT-----GGGACATGTCCTTCTGCCCCTTGCCTCTCCCATTTTTCACTCACAGAGCCCTGT---TGGATGAGAGTAAGGTACATACCATTATG-TTCTTTTGTTTGGAGTCATAGAATCTTACCAGCTAGGGCTTATGCAAGAGCAGATTGAGACCTGGGAGTGAGTGCTGCATAGGCCAGGCCCTTAGGTTT------AGTCTTCAGCACAGAGCCTGTAGGTAGAAGGCTGATGCTCTCTCATCAATCCCCTGTTTAATGTGTTAGGCTGGCTTTTTTTTCCCCAGGGAGACTCAGAATCCTGACTATATATTCCAGGCGAGTCCACCTGAACACTT---CTCATCTGAAA------GAGAGCCtattgtttgcatagtcctttctcttccatcatctccttgatgtatttgcaagtgctctgggcagaatggtgtaatgattattctcagttttgtgtggaggagcctgaggagcggaagtgagcagat-----gaggtggtacagcttattcttggtagaactggggctggagaccggtctacctcaccctatcatgctccaagtgcatgcatccttatgcccctTACTGAGACCTTCAGGT--GCCCCCGCCCCATGGTTGCT----TCCTCATTGGGCATCAACTTACATGTCCCTGCTCTTGGTCTTGTCACCTCTTGCAGCTTCCTCCTGCATCCCTGGCCTGTCCATTTC-------TCCCTTC-------------------AGGATAGGGGGATCCCACTAGGAAACCTTCTAAATGTGATTTCTCTAAGCCCTCAGGAAGGGATGTTCATTGTCTT-ATCAGCCCTAGTCATGGTGGATGTTATTTATTGTCAGATAAACGTATTTTCAAATAAAACAGAAAACAAACAAATAAATGCAGTGACAGAGCttttttttttttttttttttttttAAATCCTGCCGGCTCGGTTCACTCACTTGCAGAAAAGCCTGTGCAACTAATTAACCCGGGCAGGCCTCCGTGGTGTTTGGAATCAAGCTTGGAATTAATATTGCCCTTCTCAGCTGCTGGAGCCAGCCTCTAAATCTTTATTGGGAAGTGGCGAGAGTGAGTCACGGGGGGGGGGGGGGGGTTAGAGAGACAGCAAAAGGCCAAGGTGGAAGAAGATAGAAAGACAGGAGAAGATGAATACAGTTCTCCACCAGTCTCCAGCCCCGCACATACCAGTTTAGCTAGAGTCTGGATTCTAGACAGAC------------TGACCGACAGACAGACAAAGTTTCTTTA----------TATGAGCAAG----AGAGCCTTTGTCTAGCTCAGAGAACATTTTGATTCTTGTGCCACTGAAGTCAGGGCATCAGAGGCTCTGGGACAGGAAGGGCCATGGAAGGGGTCATCTAATTcagtggtttccaaattatttttagcagcaaagcgttttcttgaaatgaaattgcacagagacacatcatgtctaaagcagataaaagctgagttgggccacttggagcCTATTGCTCCTTGGAGCCCCTCTGTCTCTCACCACAGGG------------CTGTTAGGC----CAGG----AAAGACACAGCT---GGGAAACTAACCCTGCCTAGCTGCCTGTGTCTC-----------TGGATTCAGGCTGAGTCT------AGCGTCACTTAGAGTGGG-GTGTGGAGGACAGAATATGCCACCTGGCCCTAGAGCTGGG-TTTCAGTACCAAACATATATTTGCTTACATTTTT-AACCTTTTGGGTTCTTGAACTCTGACAATCTTACCCCTAGGGTGCCTTGTTGGCCAAGCTTGGGAGCTGGCTTG----CGGGTTTCCAGGTAAAGGTTTCTCACTGGGTGGACTTCATCAATTGACTACCTGACTCAGACTTTTCCTCACGACCAGTGAgtgggtcatgacccttttgaggtggg-atgaatgaccctttctcaggggtcacccaagcccattggaaaacaaagatatttgcattgtgattaataatagttatggagttagcaatgaacataatttaatggttaggggtcaccacaacatgagaagctatattaaaggtcaaagcatcaggaaggttgagaaccactcaagactgttttggaagttcaggagaggggaccaagggtatgggaaggacctctcttctctttgacaGTGTGGACACTATTGGG----GGTAGAGACTTCCCTGGATAGACCCTCTAAGGACCAATGGAAGGGTGGGGATGTCCCTGGCTAGACCCTGTAGGAACCAGTGGAAGGGTGGGGATGTCCCTGG----TCAGACCTCGTAAGACCAGTGGAAGGGGGGGGGGTGTTGAATTGCATATATTTGACTTTTCATATGAAGGAAGGAAAGGTTGTGAGCAG-GTCTGGAAATTGTCCACTGAGTGGCGCTGTGGAGATTGGATGA---TCTCTGGGGAAGTGGTCACTTGCTTCTGGAGTTCCTGACCTTGGCACTAAGAGCAGAGGCCTAAGGCT-GGTGGAAGGGCTTTTTATGGAGTCAGCATGGGTGAGGTGTGGTGGAAAGAGCAGTGTCAGACCCTCCTTGGAATCAGAGTGGGTAGGGGAGGGTACATAGAGTTATCCTAGACCTTGGGTTTGGAGACTTCTTGTTTGCCATTAACCGTGAGTGTCCTTGGCTCAGGTCTAGACAACAAGGGGGCACAGCAAGGAGGAGAAAACACAAATCAAGAAGTAACACT--TTTTTTTTTGAAGGAGAAATTATAAATTGCAATTTAATCACATAATCACTTTGACACTCTCAAGCAAGCTAATTTCTTCCCTTGCCTCATTTCATCTACTCGGTGAGATGAATCTTAATGAATAATGTCCTATGAATATTTAATTTTTGATCAATTTGAATTTTCTCTGGCATACCTGCTGGAGATATAAATCAGCCCCTCTTCTGTTCAGTAGAGAGAATTTGGACAGCAGCCTGGGTGGATCTCTGCCCAGGGCCACAGAAACGGCCAGTGTTG-GCTCCGAGGTTCTGATGAGCTCCCATCTCACACCGTGACCTGGACCTCTCTAGATAGGGTCTGTAAGCTGCACGTTCTAACCCCACTCTGCCAGCAGCTGCCTGAAGTCAGTGGCTGTCTAGGCAGATGAGAGCTGTCTGCAATGCCTCTCCACAGG-------TGCCACCTTTCTCCTCTAAAGACTTAAAGAAGACATCTTCTGATCTTAAAGTTCTCCTTCCTGGCCCCTGGGACAAATGTTATCAC---AAAGGCAAGTATATAGAGGGGCAATAGAAAGAGAAATGGCATTCTCAGCTTCTTTTGTGAGCTAGTACTTGGTATGTGGTGCATGGCAATTTGCAAAGTGAGTTCTCATATGTAATTTCTTAGCATGATTTCATATGTA--CCTCCT---TTGGACTTCTCTTTTCCTTAGGAGATGTTCCTGGAAAGAATCCTTTCTTATTCTGTGTTTA--AAGA------CTGGAGGTCACAGTCTGGAAAAA----TAAGTTCAGAACCAGAAAAATGAGTCCAAACTGAGCTGT---TCAAAAAGGGAAAGCTGAGCATTTGGGAATGGGTTCTGAAAGAAGAGGGGAAGGTGTAATTAACAGGCCAGGTGCTGGTGGTCTCCACAGATGATTGGCAGCAATG-TGGCCATTTCTGAGAAAACATCTTACGTGTTCCAAGGGGACTGA---------TTGAGTGTATTTTGGATGAATATCCACA----------CTGCATTCATTGTGCTTTCCTCCCAC-AAAGCAAAGGGGTTTTAGTGCTTCAG
s HiC_scaffold_1 115660087 3245 - 233722169 CTGCTTGGTTTTATACTGGGA----TCCCCCTGCTCCTTCACACCATCATCT-----------AAACATGTGTTTAGATTAGAATGAAGTATTTCCCACGGTAATTTTTCTGTAAGGACTAATGGCATGCGCCTAG-TAGGGCTT------GGTCATCTTG------------------TAAATGGGCTAAACTCTGTGACTTGGCTGAAGTCTTCAGCGCAGACCCTGTGCAT-GAAGGCTGACGCTCTCTCATTGA-ACTCTCTCTAATGT--------------------CTCACAGAGGCTTGGAATCCTGAC-----ATTCTAGGACAGTTTACCTGAGGACTTGCTTCCATCTTAAAAAAAATGAGTGTCTATCATTTGTGTAGTACATTT---------ATTGTTTAGATATATTTGCAGTTGTTCTGGGGGGGAAAGTGTGATTATCATTCTCACTTCGTGGGTGAGAGAATTGAGGCATGGAGGTCAGCCACTTGCTTGGGGTTCCACAGTTTATATATGCTGGAGCTGGGACTGT-----------CCCTGCTCTGCCATGC---AGGTGCAT---CTTTAATACTCTTCACCGAGCCTTAGAGTTCTGCCTTCTTGCTGTGG--GCTGTGCTCACCAGCAGGCATCTCCTTTCCTAACTTCAGCCGTGCTCGTGGcccttgcttctgtttcttcctctagcACTGGCTTCTTCATGTCCTTTCCATCCCTTCCAAGGACTTAAGCACCCTTGGGGTATGAGGCTTGGGCTGAGAAGCCTTGTGATTGTGACCCC-CAAATCCCT--GGAGGGCCTGTTCATTGCCTTTATTGGCCCTAGTCGTGGTGGATGTTATTTATTGTCAGATAAAtgtatttccaaataaaacagaaaacgaacaaataaattcagtgacAGAGCTGTAA-------------------AAATCCTGCTGGCTCG-----CTCACTTGAAGAAAAGCCTGTGCAACTAATTAACCCGGGCAGGCCTCCGTGGTGTTTGGAAACAAGTTTGGAATTAATATCACCCTTCTCAGCTGCTGGAGCCAGCCTCTAAATCTTTACAGGGTAGTAGTGAGAGAGCGC-------------AGAGAATTACAGAGACCGTGAGAGGCCAAGatggaagaagataaa--------agaagataaataCAGCTTTTCATCGGTCTCTGTAGCCATATGTACCAGCTTAGCTACACACTGGAtcctagacagacagacagactgattGACTGACAGACTGGCAGTATTTCTTAAGAGGGAAAATTATGAGGAAAAAGCAGAGCTTTTGTCTACCTCAgactatatttc-atttttgtatcacTAAAGCCAGAAAATC--AGTCTTGTGAGCTGGAAGGGGCTTGCAAAAGGTCATCTAATTTGgtggtttaaaaattatttttagcagCAAATCCTTTGC-TGAGATGACATCATATACAGAAGCACCACATATAAAGCAGATAAAAGTAGAGTTGCTCCAGCTGGAGCTTGCTACTTCTTGAAGTCCCTCCTTGTCCC-CCGCTGGGTGGGCTTCTGCTCCTTCAGGCTTTTCAGGGTTTAGAAGCACAGCTCCCCGGACAGTAATACTGCCTGGCC-TCTGTGTGGCAAGGCTTGGGAGGGACCCAGGCTTAGTCTCATCCAGGAGTCAGCCAAACCGGGTGTGTGGCAGCGTGGATATGCCAACTGGTCAAAGAGGTGAGCTCTCA---------AGAGAGCTACTGTCATCCCTGAACCTCTTGAGTTCTTAAGCCCTGGTGTTCTC-CTTCTCTGGGAAATTGTTGA-------GGGGAGCTGGCCTGTTTACTGGTCTTCTGGTA---------------------------------------------------------------------GGGTAATGTCTTT------GTGGGTAAGTGTGGCGCCTCCAGAGGG------------------------------TTTGC-------------------ATGAAGTCCACATTG------------------------------------------------------------------------------------------------AGTTTAGGAAggtgcaccaa--atatgggaagGGCATCTCCCTTCTCTGTAAG---AGAAGCCATGGTGACTTGAAAGGAACTTCCCCAG--AAACCGTCTAGG------------------------------TATGCCTTATAGGGGTAACTGG-----------TGCTCCAGGGAAATTAGACTttgtaca-------------------------------------ttattttttcttat---agaaGGAAAGGCAGTGGTTTGAGGCTGGAAAGCAGTCCTCAAGTAGCGCTTGAGGATTTGTCTGGTTTTCCCTGCGGAGGTAGTTGCCTGCTCCTGGAGGCCCTGTTTTCAGCA-TAAGAACAAAGACTAGAGGCTGGGTGGATCAGCTTCTCTGGGAGCCAGTGTAGATGAGGAAGGATGGAG----------------------GGACTCA-------------------------------TCAGGCCCTGA----------------------ATTAACCCTGAGTGTCCTTGGCTCAAGCCTAGACAGCAAGGGGGCACAGCaaggagaagaaaacacaaatcaagaagtaatgcttctttttttttgaaggagAAATTATAAATTGCAATTTAATCACATAATCACTTTGACACTCTCAAGCAAGCTAATTTTTTCCCTTGCCTCATTTCATCCACTCGGTGAGATGAATCTTAATGAATAATGTcctatgaatatttaatttttgatcattttgaattttctctttcataccTGCTCGAGACATAAATCAGTTCCCCTTCTACCCTACAGAGAAAAGTTGGACAGAAGCCTGGGTAGAGCTCTGCCCACAGCCACAGAAGTGGTCAGCCTGGAGATTTAGAGTTCTGGTTTGC-CACATCTCACATTATGACTTGGATGTCCCT--ATGTGCCTTGGCTAACGTACTTTGTAATGCAACTCTACTAGCAGATATCTAAAGCCAGTATCCATCTGAGCAGATAAATGCT-TCTAAAGCACCTTTCCGCAGGGATTTTCTCTTGCTTTATTCCTTTTCA---CCAATGAATATCCCTTCTGA-CACGACCTTCTCTTTTCTGGCCCCCGAGACAGGCATTTTCATTCAAAAGGCAGGTATCTAGAGAAGCAGTGTTAGAAAAGGGACCATTCTTAGCTTCTTTGGtaagataatattt----------------ttatttgtacagtgAACTACAGTTTGCAAATCAT--GTATCTTTTAATATGCAAGCCTCCtgcatttaatttctc-tttcttgagaAAATGGGGCTGGCACGAGTCCTTTTTTATCTTGGGTTAAGCAAGATAGGTTCTGGagttcaaactctgaaagaactGCTAATTTCAAATACTGGTAAGTGGATCTAAATGGAATGGTGTCTCGAGAGGGAAGAG--GAGCATTTGGGAGCAGGATCT-----------GGGAGATATCAGGGACAGGCAAGCTGGGGGTGATCTCAGTAA------GGAGGCAAAGATGGCACTTATTGAGAAAATACATTAGCTGTTTAAAGGGAATAGACAACatgtttaaaatgtgttttggaCATATACCCATatcctgtcattttgttttctcaggGCTCTCTACCCATGAAAGCAATGAATTTACAGTGGttcag

a score=23120
s chr3           105095958 2129 + 160039680 TTCAGAGAGGCCAGGAAGCACCTCAAA-GGGGAAGCTATTGTTTA-TTCTAAATCTCCAAGCCAACTCATTGTTGggcaaag--gccttgaaagtaaggttttgtgaagagagag-----atttcttaattcattaatctcatagcgggagaagatagtttctataaag-agcaaaatagaggtgctgggga-tgtcactggtaaagcccctgccaggcacgcacaaagccccagattccatccccagcacccacataaattggaagagaagcagaaaaaggacaaaagagtcaaagacccaactcttgctttctactccttacaaagtgttacaagtcggaatcacaggactctgcagaaacatccaggtagctatggaggaactcaagatggtggggattgatgcctcaagacacattctccttaacgtggctgaaggat----gggagatggggagttggatgagacccagacagttct----------------------------------------------------------------tgctgtctgtg--------------------------gcagttgcactcagcaatcttt-------------------------------------------------------------------------------------------------------catgccttgctgaggtaccagcacttccat---------------------------------------agaggcctgggcgtggaacatagagctcacaggtcagaagactttgcacctggagcaaaagggctgtaattgcagcctttagctgtggacgctggtgtgctatcctgaaaagtcagcatcacttgtgggaaagtctagga-ccagactagaTGAAGAATCTAGAATAGAATATAGAAATATAGAATATAGAGTATAGGATAATCAAGTATAGAGTAGC----AACAGGGGTCAGAGCTTAATTCTTCC----CTACAAACATCTCCAGGTTAAAGAAGCTCACCACATACAAGTATCCATTAAGGAAGAGCCAGAGTGATGGTGAAGTGTCCAAGAAGGGCATTTGGAAATCTGAATAGTTAGTGCAGGCAGAGAGAGCCAT-CAAGAAGCTGTGCATGCTCATGTTAGTAACTTCAAGGTTTTAAGTTCATGTCTTAagctaggtgtggtgactcctgcctaggatttcagcactcatgaggatgagacaggaggattgcttcatgtctgaggccagcctgggctacatactgagttgtagactagcctgggatgcaagaggcttcctctcaaagaTGACATACAAACAAACCATCTTTCTCGTAAGTCAAGTCTCTGAGCACTGATCTGGAGATGCAGAT-ATGTTAAAATGATTCTG--TGGTATGATATGAGGGTATCAAAGATAA--GGCAAAAACAAaaaacaaaaacaaaacaaaaaaaacaaaacaaaacaaaaaaaacCCCGCAAAGTGAGGCAGGGGAGGAGAGAAAGGAGCCACGGCCCCCTGAGAATACTCACTGAGCTGTCCAGCAATGTGGCACTTCTTCCAGATGGGCCATGAGAAAACATCTCACTTCAA-----CCTCTC-------------------------------CTCCATCTCCCTCTCCC-----------------------------------------------------------CCTCTCATTTTCTCTTTTCTTGACTTTTAATGATCAGTATTT--ACCCAGGGTGAGTTAAGTTGACTGAACCTTGTACTCATGT-----GGTCCCTTTAGGAAGACCAAAGGTGTTGGGGACCTCAGGCCTCTGTCATGGCCCCT-GTGGCAAC-----------Tcacaagtgctttcatactctgtgttccaaaaagtggtgcccagtgc--cccacacctgacta-gacagttctcagtgac----ttccaacaatcaagtgcca----gtgacactctgtgatttcagaagttaggtcacagaagacactgtccgtcttttctattcttacactgccagctctggaagaagccagcttctatgttgggaggatactgaagcagccaatcgtcaggtccacatggtaagaagcaaagtttcttggaactgctctgagccagccat----------cac---gaagtgggttgcctggcccattagatcttaggtgactgtaatttctgttagtgtttggacagtctccagagagacc--cctgggccagagaacccagctctgctgcccctagattcttTTTTTTTTTTTATGAcgtagaaaactgaaaacactgaagacaaag--aggatcttgaaagtagccagagag----aaaagattgtccacacagcaatgaatattctaacaccagttcttttttcaacagagacagtggaagccaaggagactatgggatggcagctttgaaccactgtgtgaaaaggactatca
s HiC_scaffold_1 115666270 2169 - 233722169 ttcAGGAAGGGAAGGAACCACCTTGAATAAAGAAGTCATTGTTTAGTTTCAAATTTCAAAGCTAACT----ACAGGCCAAAACAGTCCTGAAAATAAGGTTTTGtgtagaaagaacagaaatttctAGATTCATTAATCTCCTACTATGATTGTAGTATTTTTGTATATCAATAGGGTAGAGATAATTTAGACTGTGTGTGGCAAAGTTCCT----------TGGGAAGCTC---ATCCCTTCTC----ACCTGCAGGGA---GAAGAGGGTGGAGGAAGTGAGGTCAGGGTGCAGGACTC--------TCTTCCACTTCAGACA--------------TGGATCACAGGACTCTATAGAAACACGCAGACAA-GGTGAAGGAGCCCAAGA--------GTTAATGTCGCTCACTTCATTTTGTTTGAAGTGGCTGCAGGGGTTCAAGTGAATGGATAGCTAGATGACACTGAGGCAGTTTTGTGGCCATGACCTGGGGGTGCTGTGGAGGatttagagttttttttaaaaaaattattattttattgctgTCTGGGagttgaaccctgggccttcatactgagctactgcCCAcagctccttttttattttttgagacagggccctaagttgctcaggctgggattgaacttatgaccctCCTATCTGAGCTTCCCAGTGCTCTGGAatggcaggcatgtgccacaccaTGCCTAGCTAGGACAC-AGAAGTTTTGTGTGCCGTGGTTGGAGAACTGAGAGCGCATGTGGTCTGGCAGAGGCCAGGGATTGGGAGACAACATTCGGAG--CAGAGGACTTTGCAAGTGGAGAACGGGTACTAGAACTGTGGTCTTTAATTGTGTGTTCTAGTGTGTCATTCTGATAAGTCAG------TTATAGAAACGTTTAGGAACCAGACTGACTAAAG-----------------------------------------------CAAGCAGAGATCAGCTTGCAGCAAAGGTTATTTCT--AGTCTCCCATGACTATAAGAGCCTTTCAGTT--------TTACCATGTACCTTTA-CCACTAAGGAAGGGTCAGGGTGGTGGTGTATTGTCTAGGGCAGACATCTGGAAATCTGAACATTTACTCAAAAGAGAATGAGTCATCCAAAGAGAGGTATATGCC----------------AGTTTCTAAGGTTGTTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------GAACAA-----------------CCAAGTTTCTGAACATGGAATTTGAGACAAAGATGATATCCAAGTATTACTGAATGGTGCAGTCCTAGGGCAAGAAGAAAAATGGgtaaaaggaaggagggaaagaaaaatagataagaca-----------------------------------ggaaggagggaagggaccTATAGCTTCACAAGAAAATCCATTTTATTGTGCAGACACATGAGATTCCTTCCAT-TTGGCCATGAGAAACCACCGCACCTCAAAAtagtctctctctgtatctctgcatctttgtctctctgtgtctctatctctctctgcctctttgtctctgtctgtctgtctctctgtctggcAAAGGCAGTGATTGTTCAGGtatgtcttctgtttttctttttccttatctttttaTAGTCAACATTTTGTCCACTGGCATATTAAGCCACCTGTACCCTGTGGTTGTGTTACCCTGTCCCTCTGAGAAGACTGAGAAAGTTAAAGACCCCATGCCAACGTTGTAGCCCTTCATGGTAATTTTAAAGTGTGTTCCAAATGCTTTCATCCTTCTCCCTTCAAGA---GGAGCCTGATTCCTCCTCCACTTGAGTGTGGCTAGTCTTAGTGACTTGTTTCtaacaaacagaatacagtatGTGATAGGAATTGATTTCAGAAATTAGGCCACAGAAGGCACTGT--GTCTTCTGTACTCTTAAATTTTTCGCTCTGGGAAGAGCCAGCTTCCATGTTGTGAGGATACTTATGCAGTCTAT-GAGAGGCCAATGT--------GTGAAGTGTCT----ACAGCT----GCCAGCCATACTGCAAGTCCACTTGGCAGGGGACTGTA-GGCCCATCAAGCCTTTGCTGACTGAAGCTCCTGTTAACATGCTGGCATTCCTCTCACCAGTCATCCTCGATCAGAACACCCTGGAAAGGTACTTACAGAT--TTTTGATCTCtacattttgtaaaaatttagaaacactaaagacaaagaaaggatCCTAAAAGTAGTCAGAGAGTAAAAATAGATTTCCTATAAAGCAATGAGAATTAT--TTACAGCTCACTTTTCAACAGCAACAGTGAAAGCC-AGAAGATCATGAAATGGTAGCTTTTAAATGCTGACAGATAATAACTGTTA

a score=28271
s chr3           105099774 893 + 160039680 TATCTGCTGGCTTTGGAATCAACTCTGGTTGATATTTTTGTTACCAAATATGGAGAGAGAAACATCCCTTTGGCCGTGCCAGGCCTCTTTTACTGCGCAAAGTGAGTCGGATCCAGGGCAGGAGAAGGGACACATTGACCTTCCAAGGTCCCTTCCTGCCGGAAAGACAAGGATTTCTCAGCAGGCAGTGCTGTAGAGAGCAGGCCCT--GCTCAGGTTCCCTCTGAGGAGCGCTGGCTTTCTTTTCTCCAAGTGATTAGCGCGGAGATTGACAGGCAGCAGTGGCAATGGGTGTTTAATGTTCTGGAAATCCCTAGCCTCTTCCCTTCTTTTCCAAGGTTCTCCCTGGTGAGCCAGGAAAAGGCCTCGCAGCTTAACAGGCAGTCAGAGATGGGGCCTGGGAGGGTTGCCACCAGAGACGGAAACTTACCACAGTGACAC------CCAGCCCAGGCAGGACTGCATTTATAATGGAGAAGTGGCAGGTTAG-------------------------------------GCGAGGGTACTGGGACTCTGCCGTGACCCTGAGATTTGATCGACATCTTGGCCTCCAAGTATGGGGAATGGATTCAAATGGCTCTGCAACTATAAGATGGTGCCTAGCACCCGGGGCGTGGGGCTGGGTATCATGTGTCCTTGAGCC---TATTAAATAGAGCCTTGCTGTGCTGGGGAGAGCTGACAAGCTACTTTAACTCCCCATCTCAGTTCTCtattgactgaatgatgtctgggagctcctctatccctctgagcctctgctctctttctctgggtaagaggcaatcataactctccctcctgcagagctgaattatatggtatagatgaacaactgcctgGCA----CCATGAAGGTGGAAGATTAAATGGTAAAGACTA----TGTGAGCTAGGTTTTCTGGCTTCGAGCCT
s HiC_scaffold_1 115670535 876 - 233722169 taTTTGCTGACCTTTGAATAAGCCTTGCTT-ATGTTTTTGTCACCAAATATAGAGGGAGAACTGTCACTTTAGCAGCTCCAGGCTTATTTCTCTGCAGGAAGATTGTCTGGGCCAGGGCAG---AAGGGATGCATTGACCTTCCAAGGTTCCTTCCTGCTGGAAAGACAAGGATTTTTCAGCTGGCAGTGCTCCAGTGAGTgggcccccacccccagctcacTCTCAGCTACCCTGACTTTCTTTCCTCCAAGTGATTAGCAGGGAGATTGGCAGGCAGTAGCAGCAATGGAAGTTTAATGTTCTGGAAA--ctcaatctttttcctttttctccaagcTTTTCCCTGGTGAGCTAAGAAA--GTCTTTCGGTTTAACAGGCGGATGGGGATGAGGCCTGGGATTTTTGCCATTAAAGGAGG-AATTTGTCACTGTGACACCAGTGACAAGCCCAGACACAGCAGTGTTTGTGGGAAAGAAGTGTCAGGTTTGAGAGGGAACCGCTATGCCACCCTGAGGATATTGTCCCATTAGGGCACTGAGACCCTGCCATGACTTTGAGATTTGAGTGGC-TCATACCCTT--GGTTTCAGCAATGGAATCAATTTGTCTTGCAGCTCGAAGCTCCTACCCAGAACCTG----GTGGG--------TCCTAAGTCCTTGTACCTGTTGTTATAGGAAGACTTGACATGT---AGTGAGATGACAGGTGTATGGGAATGCCTACCTCACTTCTCTCCTAGCT---TGATAT---AGAGGCAGTTTATTCCTCGGAGCCTCAGTTTTCCTTCTCTG---AAGAAATAAT-----------------------------------TGTACATG--CAACTGGCTAGCAGTACTCCTGCTAGCGAGGGAGGCAGTGGTAAAGATCATGCCTGTGGAATAGATTTGGTGGGTTCAAACCT

a score=21577
s chr3           105102672 2573 + 160039680 catagatagatacccaagttgtgtctacagttaggttactctgttggcactgctgtggattcggatatacagat-----------cactgagaccttgcttttaatgctAAAATAAACTTTATTACCATTAGTCAGTTGGTcagatgtagaccacgaggcccagagaagataggtgatttgctgatggctgcagttagtaa-------------------atccaaagtcagTGTCAGGCCACCTATGCCAA------GCCACAAGACTGGAACTTGCCTTCCTGTGTCTTT-ATCTGTTAGAGACTGCAAGAT------TTGTCtttctcggctacatttgcctttaacatatttgaagaaagacgtcatgatgtctttaaggtttttttttttctttctttctttaggctaaatac--tcaactgtttgttaaattatatgatgctgttctgttcctgggtatctcaataccccagccgacttttccagtgtgcacttatagcttaatgtctctctGATGCACTGTGTTCTCCATCACAAACTACTGCTTAGGATGCTATGAATCTGCCTTGGCAGTATACTCTCATGGTTTAAGAGCACAAACTTGCTGATATGGAAATGGGGGACTGTAACCCCAGTACCCAGGAGGCTAGTCACATCAAGATGTTGTTTCTAATAATCCACAAAAACAAACCAAAATAATCTACTCACCCAACTAACTACACAATGAAAAACTCTAGTAAGTGAaggacaggccggtaagttaggccaaactaggttcaaatgttggctctgccCAAGCTTT------TGTGATtgtagcagattgcatattctaaagatggccaccacaatatgtctcact-cagtatgttcttcttgcag-------------------tgtgataatgttgcttttaccatttggtggaatctatattctttctcctgaagcctgggtagacctttga-----------------------gacaagctaagtgtgacttctgagggtaaatcataagaat-------acctgcacctcattgtgttgcctttgtcgctgacttggctcactgttgCTGCTGTAACATAATAACTGCtatattataatatatataacatatatatatatatatatGTCTTCTTTGGCTTATGCTTTTTGTA--TGACAGG---AAAGA--CCAATACTATGAT--------GCTGCCACATGGTGGAGAAGTAGGAAGCAAGCCAACCATTAAAGGGCAGAAGTAACTAAGT-------------------------------------------------------GGACTGGTCT---------------------------TCATTTA------------TAACCCACACT----------------------------------AATAAAAACTTAGTATAAAa----acaggg------cacagtggaggcatgc----------------ctataatcctag----cactgggtgacctgagggaagaggactgaaggctcagtgctagcctgggctatatag-tgagttctaggctag-gccagaatatatagtaagaccctgtctaataggaaaaaaaGACAGTCATCAAGGTATCTGTATGTATTGTAAGGAaacccctgagatgcttggattcagcccctaactgcaaaacaatttaactgcaaaagcatgaacaagctcaggtaagagtcactcaactgggcctggtcaacctctgaatgaaagagttgtctttagcttctaagtttaggagcaattcagtatgcagcagaaggcaactGGATGGCTattttaggctttactagagctctctgcatttcagtttccttatctgtgaaactaggctcctgaaatctacctcacaggattgctatgggcattaaaagacaacgcaCAgggctggggatgtggttcagttgctagagtgcttgcctagcatgtacaaagt-tcagtctacagcatcacataaatcaagcctggagcacaggtctgcaatcccggcattcaggaggtggaggcaggatggttagaagttcaccatcatcatcagctacatagtgagtttgagaccagcctagaacacataagaccctgtccaaaaaaaaaaaGGTGAatatgtatgtatgtatatatatatatgtgtgtatatatatatatatatatatatataACTCTACCTGTGCTTGTCATCACATTATTCTGCAATAAAAATGAATAATAATATCATAAGTGATAAGGTAATGGAATCTGGGTTGAGACATTAGAATGAAGTAAAGACAGAAGAATGGGAGACTGAGCTTGCACTGGGGGCATCTCTAAGAATAAGAAGAGGACTAACTTATGAGTTCCAAATGTCCAGTGGGTTATGACAAGCTTCAGGCAGCATTCAGCTTGAGGACAATCAATCCAGAGTTGGGAAACCTTTACCTCTTATCCTGCAGTGGTATGTATCAATGACATGTGTTAAGACAGATGTCAGGAAGGGAAAGCTTGGGGAAGACTGGAGTTGATGGCTGGGACAGTACAGGCAGAGCATGGCAACCTCTGGCTATAAAATTAAACAGTTTTGGGGATCAGGCTGCTGGGCTACT-AGCAGCAAACTTTG-----AAGAGGAGTCTGTACAAGCATCCCAGGTATTTCAGGTCACTGCTGG-----------AAGTGACAA-------AGGAAGTCAGGGAGAATG-----TAAACTCTCCTGCACTGTGGCTTTGTGT----------CTCTGCATCAGGGAGAAATGGTTTCAGGCTTTTAAAGGACAAGCCTGCTGAAGAGA-TGTCTAAATAATTTAGGCAGCTGTTAACT
s HiC_scaffold_1 115676623 2250 - 233722169 catcagtggacatttgggttgtatCTACATTTAAGTCATTGTGA-------ATTATGGAGATAAGAACACAGGTACACGATGCCTCTCCAAGACCCT-TGTTAAGTGGTTGGataaattttattatcttcactttatagatatggAGGAAA--ATGAGGCATGGAGAGGATAAGTGACTCACCTAAGACTTCAGCCAATAGGTGAATCCAATTTGCTTGGATCCAAACCCAGTGTTCTGCCATCTGCACCAAATTTCTGGCAATAGACTGAAACCTGCTTCCCTGCCTCTTCCACCTATTGGAGGCTGTGAGTCACAGCATCTTCCTTCTTCCATATGTTTGTTCTTAATGTATTTGAAAAACTCTTTCATGGTATTTCATAG----------------TTTTCTTTAGGATAAATATCATCAACTATTTGTTAGCTTGCAAAACATTGCTTT-----TAGGCATCTCAAAGTCTTGGGCTCCTTTTT---------------------------TCTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGTAATC--------------------------------------AGTTAATGTC---------------------------TCAAATACTGGTTCTGTCCAGTCTTCCCACTGTGTGACTGGGG-AGATTGCAGTTTCTAAACATGGTTGCCATGATATATCTTCTTATACTGTGTTCTTCTTATATGCGACATATGTTCTTATACTGTGacaatgcttttcttttcatatgGTGGGGTCTCTCTCACTTCCATTTAAACCTGGGCACTTTTATGACTACATAGCCCAAAATGATAATGGAAATGATACATGTGACTTCCAAAGGTATGTCATAAAAGTTCTATGTACTTTCACCTTTTTTCCTTGGGTTT----TCATCTTAGCCTACTCTGtctgctataacaaaatagtt-cta--------------------atatataaataaaagagatttCTTTGGATGATGACTCTGGTAGTTGAAAAGTTCAAAGAACCTAGTGCTGTCATTTGGATGTGCCACAACATAGTAGAGGAGTACAAAGAATACCAGTCA----AGGCCAGAAGGGACCAAGCACAGGAGCAGCACTGCTTTATAACAGTTCGTATCATAACTTCCCTGATGCTCTGAGGACTGTGCTAATATTTTTGTGAATGTGATTGCTGTATGATTTAATCACTTTCCACTAAACCTCACTTATTCTACTACTTTTCAGTAGTGTTACATTGAGTGATTAAACCTCAATATGAGATTTGACAGAGACACACCTTAGCAGACACACGCTCTTGGAGGTCATTCACCATAATTGAAGGAAGCCCAAACTGACCGGAGTGGAGAGACCTCATATGACGTCGTGAG--TAGGCACTGTGGCTGATAGCTGAGCTGGAGTCCTAGTGTATAGTCAGTGTCAATCcc-tggacatagaagaaagtctTTGAGATGATTGTCCATGTTGAAAGGAAGCCTTGGAGATACT--GATCCCAACCCTACCC-----ACCATCTAACTGCAACATTTTGAGGAAGACCAGGCAAGAGTCACTCAGTTGAGTTCAGGTGGTCTCAGCATAAAATAATTGTTTGAAACCACGAAGTTTAGGAGTGACTCATTATGCAGTAATGGATAATTGAAACAGTATGTTAGAGTTCTCTCAAGCTCTCTGACCCTTAGTTTTCCTATCTGTGAAA-TAGGTCTATGAAATCTAACTTGGAGATTTGTTATAAACattgaaaa-----------------------------------------------caatatatataaaGTCTCAGTTTAT-----------------GCTTGG----------------------------------------------------------------------------------------------------------------------------------------------CATGTA-------ATAATTGTGT-----TATAATTGTCTACAAGTATGAC--------------------------------------------------ATCATGGGTGAGATACAAA--GAGGTTGTTGTGAGACCTTAGAACGAGGTAGAGACAGAAGAA------------CTTGCAGTGGAG-CACCTCAGGGAATAAGCAGAGGGTTGAACCACCAGTTCCAAACATGCAGTGAATTGTGACAAACTTCAAGCAGCGTCCGGTGCAGGGAATGCTAGTTCAACATGGGAAATAACTTACTTCTTAGCTGGCAG-AGTGGGTATGAACCATCAGCATTAAGGCA-------------GGAAACTTGGTCAAATTTAGAGCTGATTTCTGAGAAGGTGTGGATGGAACA--AAAGCCTTTTGctgtaaaattaaataacactagGGATT-GGCCACTGGGGTGCTCCATAGCAAACTCTGTAAGTAAGAGGGGTTTGTGTGAA-ATCCCAGGAATTCAAAGTCACAGTCGGCCAAGTTAACAAAGTGCCAAGGTGAGGAGCATGGGAAGGAAAATGCCTGATAAAATTCTGTGCATGGTGTTTTGTTGTGATTTGACCCTCCTGCTACAGAGGGCAGTGGTCTGAGGTCCTGAAAGGACTAGCCTGCTGAAGAAAGTTTCTGAGAAATTCCAGCACCCAGtaatt

a score=54861
s chr3           105106582 2127 + 160039680 TCTTTGGTAGCATCATTTTGAATGGCAGGTAGCTATTAGCTTCTGGGGTTCAGTTGAGTGGGCTG-ATGGGAGCTGGGGGAGAGAGA--AGTGACGATTTAGGAAC----AGTGCACTTCATAGATACTACTCGAGGCA--GAGTCTCTTGCTCAGCAGACAGTGTGATG-----CAAACCTTTGTGGGCATCTTGGAGTCAAGGCTTGG--------------------------GCTTTGAGCCTAGTGT----------------------TGGGAAAGGAGC--TTAACTGCTGGGGCACCGTGGAGTCAGGGAACTGTGTCTG---TGCGGTGACAACATCCTCAGCCAGTGTAAGAAGAGCTATGCAAAGAGGGAATTTAGTCTGCcccagccctgctattagccagctctgtcactacaggcagtgtacttcatgta-ctctgtccagttttgtcatctataaactggtgataaaagcagcatctccctgggtttctgagggcattgaataagtaaagtacagtccttaaaatagcacttgggacacagtaagcgctcactatatgtgaattagcattat---acaatttaccattgcgtgagctgctc-----------gttccactctcctttcaaactgagcccgtggctaattgaaactccagagtctttttcattggaatcactattgagctcatatttagtctccacactgttattgtTTTTTAATTGCATGGCTTATTAATGTCCTTTGTCTTAATTCTGATCTATTAGTTGAGTGCATGGTAGTTATCCAATAATGAAGTCCTCTTTTTCTTTTTTGGAGTCAGTTGGGTTTTGGGTTCTAATGTCATGTATAATTTTCCTGCCTCCATTTTGCAGGTGACAAGGTT-------------------------------------------------------------------------------------ctttgtgccatatattgggccaagtgctttgcatggagcgtctccgtgaatcctcagcacaatcTGAAGTGACAGGATGGAGTGTACATAT---GCACAGGTGGGAACAGCAGTTCATAGCGGCTCAGCAGATAGCGCAGGCATATGCTTCCCTTCCAGCCTCCTGCCTTGGGTCTTTACAGTTTGTTTCTCCTCTCTAATggttgctgggcttaatcaacagaaatacagggcattcagttaacataggatttcagataaacaagaaacaaAAGTCCAGCCAGCCGCTGCGGTGGCTCAGAATCTCTCCCATACCACAC----------------TCTCCTTACCCTGAAACGTTACAGTTCTGTTCAGGCGGCTGAAATCAGGGCTGCCCAGAACACAGCCACAGGCAGAGAGAAGTCAGAGGAGAAACCCTGTAGAAGGAAGGTCTATGTCTCTCACACCAATCCCAAATCAGTACTCTGCGTACCGGCTCAGTCAGCCACTGATGTTGGGAT----TTGATGCTGCTGCTGGAAACTGAAGTCTATAGCTTCTTAAGTCACAAAGCAAACCTCCTTGTTTCATATTTGTGAGACAGAGTCCTTTCCTTGTTTCCTTGGCTGCAGTCTGGATGCTTCTAGGGTCACATACACTGAATCAATTTCAGAAAACTCTCCTTTTCAAGCAGAGTGTGAGGAGCTCTATAAAGCATCCTGGGAGTCATCAGCAGCTGCCTGTATTTACTCTTGTTGTTGATTAAAGTAGACAGCTGGAACACCAGCAACCCAGACTGTAGGTATAGGACTGCCAACAGTCTGACTGTGGGGAAAGAATCAATAGCTAGCAGAGGAAGC---AAGAGAAACCCAAGCCTTTCTTTCTCACCTCACAGAAC-CCGGACTTAGCAGAAGGGTGTCAGGTCAAAGGAAGAAGTGGGAGAGGTTGTCTTTTATTTTCTTTTTGCCCTTTCCCAATTGTCTCCTTCTGCTTTCACATGctctcttcctgcctccctccctccttccctctctccctcTCCCGTCTGCCCTGTTTTGGGAGGAGAGAAGCAGCTGAATGTGTAAGTAGCACAGAGGCAGTTGCCTGTGG-------------GCCCAGGGGTCTGTGGACAGCAGTGGCATTAACAAAGCTTTTCCATATACGATGAGAAAACGGTGG-----------TGGACAACCCAATTAACCTTTTG-----ATTTTTCA---CTGGATGAGAAGGGGGAAGTTGGGAAGGGA-----TGATCCCTGTCCATGTAATGATGACCCCACTTGCATTGGTGACCACAAAACTTCCTGATTCCTATCTTTATGCTACACAGTGGCAGATGGGGTACAG
s HiC_scaffold_1 115679662 2074 - 233722169 ttttttatgcCATCATTCTTAATGGCAGGTGGTCATTAACTTATGGAGGTCAGTTGAATGGCTTGgatgggaggagaaggaaagagatagGTGTCAACTTAGTGGCCATAAGTGCATGT-AGAGATGTTTCTTGAGGCACAAAGTGCCTCACTCAATAATCAGTGAGATGATCTGCTGAGCAAGATGGGCATCCTGAAGCCATGCCTTGGCTCTCAGAGACTCTTCCTGGTCAGGTTCTTGAACCACAGTGTGCCTATCCTCCTCCTTATGCTGTGGGTACAGAACAGTTGAAGGCTGGGGTGATATTGGGGTAGGGGAATGTGGCTGAAATGTGCTG---------TTAACTAACTCCAGATGGACTGTTCACAGAGAGAAATTACTCTGTCCCAGTTCTGCCATTAAC-AACTCAGTGACTACAGGCAATTTACTTAACTTCTCTCTGTCTGATTTTGTCATCTACAAGCGGGTGATGAAAGTATCAGCTCATTGTGTTGTGGAGTGTATTAAATGAGTAAAGTACAGTACTTAGAGTATCACTTGGGACATAGTAAGTGTTCGGTAtatgttaattattattattatgtaatcTATGATTGCATAAGCTTCTCATGGTAATTGTGCCTCGTTTTTGTCTTAAACTGAGCTTGTGGCTAATTGAAACTCCTGGAACTTTTTCATTGGAATTATTATTAAGCTCGTATTTATTCTCCATGCTGTTACTAGTCTTTAATTGCATGGCTTATTAATGTTCATTGTCTCAGTTCTGATCTATTATTGTACTACATGGTAACTATCCAACAATTAAGA------TTGCTTTTCTGAAATCAGTTGTGATTCAGGTTTTAGTGACAT----AATTTTattgtctccattttatagataacaAAACTGAGGGAAAGGGGACAAAACTGGAAGGGAAAGTAGGGAGCAAGAAATGTACTAAGGACAAGATATAGCCTCCTGAAGACCCTCTTCCTTTGTACCAGATATTGGGC-AGGTACATTACATAGGGAATCTCAGTTA-TCATCAGAACAACCT-AATAATcaggatttattatttttatttgacacctatGGAAATAGCAGCTCAGACTGGCTAAGCAATTTGCCCAAG-------------------------------------------------------------ATTGCTCGGCTT---------------------------------------------------------------------------------GCTTAGCATTTCCCCTACATCATGCCATTCCTAGTTTCGGGTCCTTTTACACTGGAACTCTATGGTTCTATTTAAGGTGTTGAAGTAGATGTATCGTAAGACAAAACTAAGGATAGAGACAAAGCACTAGGGAATTC---TACTAGGTAGATCTATGACTCCC---------CTGAGTCAATAGTCTCTGTATAGA-TCATTTAGTCACTGAAATTGGAATGAATCAGATGCTGCTATTGAAAACTAAAATCTTGAGCTtcataatttacaaagaaaacctCCTCTTTTCACATCTTTAAGGGAAGTCGCTTTCCTTATCCCCTTGGCTGGAATCTGAATGCTTGTAGGGTCACATGCTCTGAATCAATCCCAGAAAATGTTCCTTTTGAAGCTCAATGTGAGAAGCTTTATGGAGCATCCTGGGAACAGTCAGCATCTGCCCATATTTACTCTTGCTGTTGATTAAAGCTAACAGCTGGAGCACCAGGAACCCACACTGTAGGCACAGGACTGCTGACAA-------GAAGGGAAAGAATCAATAGT-----GCGGCAGCCTGAAGAAAAACACAGGCTCTTCTT--CCAACTATCAGGACTCTAGACTTggcagaaaagag-------aagaggaggagaggga---------------------------ctAAAGCAGATTTCTCC--------TAGAATACTC-----------------------------------------TCTGTCCCACTGTAGAAAGGAAGAAGCATTTCAGTG-AAAGACGGCATGGAGGCTGGTTCCGGCGGGCTGCAGGATTAAGCCAAAGGGCTTGTGGACAACAGT---CTGAACAATATTGTTCCCCAGGAGATGAGGAAATAGTGGCAGCAGCGCCCTAGATACCTGAATAATCCTTTTGTCCCCATGATTCAGAGTGGAATGGGAGAAGGGGACCCAGCAGAGGATACCCTGATCCCTGCCTGGGGAATGATGCTCCCATTTGTACTCGTGGCCCTCAAACT--CTGGTTTC--CCTTTGTGCTACGCTATGGCAGGTTTAGTGCAG

a score=9962
s chr3           105110122 247 + 160039680 TTGGGGATTTGTTACCAATGTTTAGCTTATACTAATTGCTATCTGGCTGTATCTGCTCAACATAATATACACGGAGTCCCCAATGAATGTTCTGTTGAGCTCCCTGGCGAGGAAGAACT-TTCCCCCTTACGAACAGAGCAGAATTGCATTAAATAACCGAGGAGAACCAGCTG-CCTCTCCTATTTGCCTAGCTAATGTGCATGTCTTTTCTATGTCTTTCCTAACTTCTTCAGGCCATCAAACTTAC
s HiC_scaffold_1 115684159 236 - 233722169 TTCGGTGTTTGTTATCAAAGATTAGCTTACACTAATCAATACATGGCTGTATCCACTGTGACTAATGTATAGAATGTGCCTCCTAAGTGTTTTGTTGAGTTCCCTGGTGAGGGAGCGCTGTTTATGCCTGCAAATAGAACAGAATTGCATTAAGTAACTAAGG-GAACCAGCTGTCTTCCCTTATTTGCCCAA-TAATGTGC-----------ATGTTCTTCTTAACTCCCTAGGGTCGTCAAACTCAC

a score=102139
s chr3           105112932 6449 + 160039680 [encoded data, 7131 characters]
s HiC_scaffold_1 115687406 6036 - 233722169 [encoded data, 7131 characters]

a score=4164
s chr3           105120549 108 + 160039680 TTAGTGGCTCATGAAATTTCTGTCACAGTCATTCAAATCTGCCATCATAGTGTAAACATAGGCATCGATAATGGATATATAAGTGAGTGTGG------TTCAATAAAGCCTTAT
s HiC_scaffold_1  29180806 114 - 233722169 TTGGGGCCACATGAAATCTCTGTTACAGCTACTTAAATCTGCTATTGAGGTGTGAAAGCAGCCATGAACAATGTGCAAATGAATGGTTGTGGCCATGTTCCAATAAAATTCTAT

a score=31846
s chr3           105121656 2317 + 160039680 TGGTTTGggaaaaatttcagtttattctttgccttcgaaagttt-aatcatttttgtctataaataaatggacagttgacatattaacaggaaaatgtgacaagttttgttaatgtgtaaaactacgaaagctatatacaaagcacaaggctcacattaaggctagacagttgaagtttatataGTGGCAGACAGAGGGGTAGGGCATGGGATTTATTGGGGGGAGGAATGGGATGCAGA-CTGTAGACAATCAAGGCAAGGGGGGATAGAGCACGCACTGTGTGCCGTCCTGTTCT-----TGCTGCCCATT--GTCATCCTTACTTGGGCAGATGGCTCACTTTTCT---TCCTGC-AAAAGGATCCTTCCAGGCAGAAAGGAAGATGTCTGATAAAACAGCTTGACTGCATTCCCTGGCTACTTCCTTCAGGAATGCTGCCTTCCCGAATAGATGTATAGTTAGGTCTTTTATGGAGGGAGACTTTCAGAGCCCTTCCGGTGGTCTGCAGAGGTCTATGTTATCTCTGAGCCACCAACTCAAACCATATCAAAGAAA----TATATTTGAAGAGAGATACGATTCACTCTTCCAAATGACCGAGACTGTGAACTTGACTTG-------TGGGTCTA--TCCTGTCCCACTGATTCCCAGAGAGAGACTGTGAGCATTTTGCTTAATT----------------------------AACATG-ATAATGACAATG--------ATAGATTGCCTGTGAGAATCCAGTGTGATAAAGTT-----------------CTTAGAACGATTTGGTCATTCTGTAAGAAACACATAGTTAATGTGA-CTGTTACTAATTTGATCACCTCTACTTAGTTCAGTGGCTGGTGCAGTGAAGAGGTTCAGTG----------TCATGTTC-CTGACATCCAAGAGG-CAAAACATTTTGTGGGGTGCCTTCTGGGGGAGGAAGCTGCACTGTCTCCCAAAGTTGCATGGCTGACTTCTAGATTTCCAAGCTTTCTTTCTGAGGCCATCAA-AAGTTCtctttctttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttccttccttccttccttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcCACTTTAAATGATATATAGGCTCTCCATTCTTTGTAGGGCATTTTTTTTATAGTAAGGTTACTCTCTGTAGTTTTCTAACTCTGAAAACTACCTTCCTTAAGAGAAATGGGTAGAAAAAAATTTCTTCAATTTCTAG---------------------------------------GCCTCCCTGCCCACCCATTCCTCCCTGTTTCTGTGGCTTCCACATCAGCCCTTTCCAAGACTGAGCATTGCTGTTGTGACAGGCAAGTTG-GATAAAGCCTGGGAAAAGCCAGAGAGACCAGGAGAACAGAGAGGTGGACAGCCCATGAGTGGGG--CTAGAACATCCTATGTTTAAGAC--ACAGACCCTATCTATTCTGCCTTTCAGATTGCCTGGACTGGGAGGTCCAGCATGTAAAGGCTTCCCCATCCAAAAAAGACATTAAGGGTGTGCTTCACACCCTAGTTAGCTTCTCAGGCTCACCAGCTTCACACCTGAGTAACTGTGGACGAGCTT-----CTATTACCAGTGACTGGCTGCTTCACCACATTCCTC--TCTCTTCTTCCATGCCACCAGGACCAGAGGGTGGTTCAGAAGGGGG---GGGTGGGATGATCTCTGTCCCCCTTCCACTGAAGCGGAATTTCCTAGGCCTGGAAAGACTAGGGAAACCTCAGACAG----------------TTGACAGGCAGGAGTGTGGGATGGACAGAAGAAAGGCAAGAGCTAGGGTTTGCTGGGTGGTAGAATCTACTTCTAATGGGAAAGGGGTGGTAAGACTGCAGAGCTGTAGGAGGGGCTTGGGAGAGTTCACAACAGGAACTGGTAAGAATAGTCTGTATGAGGGCTAGGTTTGACTGCCAATATTTGGCTCTCTGTGGGATAGCTTCCTTCAATTCAGTGAAGAAGC--TGGCCCAGCAGACATTAGGGCACATTGACTCAGAGTGATGTGGAAAAAGACCTTTAACCTTACCTCCAGATC--CAGGCCAGCTTCTCCAGGGCTCTGTGTGAAGCCCTGTGTTAGTAAGGTCTGAGTCCTCTTTCATGGATGGGAGCTGATCTGTTGTCTATATCC-TCTCAAGAG-CACCAGAGGCGAGGCTGAGATTTGTGAAATGGCAGGGAATTTG-GTCTGAAGTAGCTGTGGTTTCTACAAACCAACTTATTTTGGTTGGGCCAGAGAGTGGTTGGTTCCACTCTCCAGCCAG--------TTTCATGAACTGGTGAGTCTGCTAGCCAAATAATTCCTGGATGGATTTCTCT
s HiC_scaffold_1 115693638 2150 - 233722169 TGGTTCAGGGAAGGTTTAAACTTACTCTTTCCCCTCTGAAGTTTCAATAATTTTAGCCTATGA-TAAGTGGACAATAGGCAGATTAACAGGAAAAGATAGTAA-CTTTATTAATATGCAGAGACGTGAAAGCTCTGTA--AAGTGTGAATCTCAAA---AGGAGAGCCAGCTGAAAC--ACATGGACCTAGACAGAGGGATGGGG-----------------------ATGGGGCCCAGAGCCATAGGGGATCAAGG--AGGAGGTGCCTGGGAAGCAAGG---GTTGTCTTTTTATATAGATGAAGTCCTTCAGGTTACAGACACTTGAGGGAATCAGACCCTTGTCTCTGTCCTGTGAAAAGGACTTTCTTAGGCAAAAAGGAGTTTATCAGACAGATAAA---------------TGGCACCTTACTTTGCTAATATAGCGTTCCTTTATAGATATAAATTTC--TTGTCCAAAAGGGTAGCCTTTCAGAGTTATTCCTGTTATCTGCAGAGGTTCATCATTCCTTTGAATAACTGACTTGAAATAtgccaaagaaagaaatatgtttgAGGTGCGAT--GTTTTACTCTTCTACATGATTGAG--TGTAGTCTAGAATTAGACAGCCTGAGTCCAAATCCTGTTCCCCCATTT------GGGCAATTGTGAACATATTGTTAATTTCTCTGTGCCTCACTGTTTTCCCCTGTAAAATAAGCATAATAATAATGTCTACTCCATGGAATTATTGTGAGactcaaatgaaataatataagcaAAGGCTGTGGAGACTTTGGACATTTATGCCAATAAATTAAAAGCATGTAATAGATGTGGGCTATTATTCATTTGATAGTCAGtccttagcacagtgcctggaacAGTGGAGATGCTGAATAAATGTTTATATCATGAGCTCTGAGGTCCAGGAAGACAAAACAATTTGTGTAATGT-TTCCAAGTAAGAAAGCAACACCATGTCCTGAAGCCACATGGCTGAGTTCCAGACTTCCATCCTGTCTCTCTGAAGCCTTCAACAAGTTCTTGTCATGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------ACTTCAGGTTATTTATAGTTTTATCATTCTCTATAGGAAAACTTTTTGCAAGTTAGTTGCCTTT-----ACTTTCCAACCCTGAAAGCCACTTTTCCTAAGGAATGAGGGTAG-GAACAATTCCTTCCACTTGtagttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttctgtcccCACCTCCTTCAGTGGTCTCAGCACCAACCTTTTTCAAGATGTGACACAACAGCAGTGACAGGTTAGGGGAGGCAAAACTTGGTTAACGGGGTAAAGGTAAGAAGGC---AGAGGTGCATGGTATAAGAAGGGGAACCT---GCACCCTAAGTTGAGGACTTGCTGGCTCTAC---TTCTGCCTCTATGATTGCCTGGACTCAGGGATCCAGCATGAAGATTTTT---------GGAAAAACATTGATGATGCGTTTCATACCCTA---------TTGGACTCACCAGCTTCAAACCTGAGTAGCTATTGATCCTTTTCCCTGCCATTCTCAGCTACTGTCTGCTGTACCACACAAATCAGCCCCTTCCACCTTGCAGGTAGGGC-----ATTGGACCAGGAGGTGGAGTGGGCGGGATCA------GCCCTCATTCACAACGATGGTATTTCCTAGGCCTTG-GAGGCTGGGGAAACCTCAGCCAGAAGACAAGCCAACCCACAGACAGAccaggggaagggaagagaggaagagagccaAGAG--GGGTTTTGCCAGGCTGTGAAATCTATTTCTAG-GGGAAAGGGGTGGTGTGA------AGGTCCATGAGGACTTC---AGAGCTCACA--AGGA--TGATCTGAGTTGTCCTGAGGAG------------------------AGATCTTTCTAGAGAGGATTCTCTCTGTGCGAGAAACAGGCTTTTACCAAGC---CATGACCGTGCCTCACcccagga----aaggagaaagagcaATACTCTATTTTAATGGTCTTTAGTCCATCCTTACTAAGG--CTGTGTGA-----------AGTATGGCCCTGCCTCTTTTCCACG--TGGGAACTGACC--CTTTTTACCTCCATCTCAAAAGTCACCAAAGGTGGGCTTGGTGTTGGTGAGATATCAAAGAATTTTCCTGTCAATTGGCTGTGATTTCTACAAACTAAGTCATTT-----------------------CTCTACCCTCCTGGCAGCCATATTTTTCTGCAAGTGGGCAAAGTTACTGGCCAAATATCTCCTGGATGGACTTGTTT

a score=3936
s chr3           105125301 157 + 160039680 ACTTCTTGGCAGAGTCCTCTTAAATTTTATAATGTTGGCACCTCATTTGTTTTACCCAGGTCCCAATT------GTGTGTGGACCCCAGAGGCCTAAGGTAGCACACCCACTGGGTGGAGCCTTTGGGGGCAGAG---------GAGAGCTGTGGGAAG--ACTGGAGGATGGG
s HiC_scaffold_1 115695780 169 - 233722169 ACTTGTTTGCAGAGTCCCTTGAAATTTTGCACTGTTGGTTCCTTACTTCCTTTACCCAGGTATCAATTCTCCTCTTTTGTGGCCCACATA---CT--GCAAGTCCATGAACAGTAGAGGGCCTTAGGAGGTAGAGACAAAGCTTGGGAGCTCCAGAAAGAAACTAGTTGGTggg

a score=38033
s chr3           105126989 2473 + 160039680 CTAGCCTGTCAAGGCTGCTGATTTTCTTTAGGAATAAGGTAG-----GTGGGAAACAGGTACTATCCTGTTtactatactatactatactatactatactatactatactactatactatTTCAGGGCCAGTGAAGGTCTGATGACCATTACAAGTTAAC-AGTGGCCTGGTTTTCTGCAGCAAAAGGAAGGGAGACAGAGCATGCTCAAG--------ACAGAGCTGTGAACCCAGAAGGTTCAAAGAACAGCAAGAACCCTTCACCTAACATCAGAGCAT----------TGCCTTTCTTATGCCAG--------------TGCCTATGGCCTGGACTCACTGAATGCTGATCACAAT--------------aaggcttgtagtgaaaacatttaaacaggtatgacatgggcactgaccacatggaatggaggcagccgggcagaggcctggaggcttctcttatgctgggtgttgatcctctggttgctgggttat-agacaatctgggcagtactgggttgga-------aggt----ggggagctcactggtgtgctG----CTTGGTCAGGGGTACTCACACATACACTGTAGCAAGCTCGTGGAAGTagatcactggctcttgtagccagagttcctgatttggtaggcccaggtataaatttctcccaagtcccaggtgatgctcatgatcctggcctagaacccacaGCTCTTAACTAAATATTT-AGTATTCTGAAAACTGGCATGGCCCTGAGGATGGGAAGTCGATTCATTTCCATTCTACAAATGGGCAAATGGAGGCATTGATGAAGATCACATAATTG----------------TCAGTGAT-------------GCACGCCTCTGAAGACCTGACTTGCTTCCTGAGTTTTCTAGCTGGCAGCTCTCTCTCAAGACCAACAGAGGTCTGGACAAATGTCTGACCTCCTCTG-------------------CCAGGCAGGAGGTGAAACCAGACA----CTTGTGGGGCCCCTGCCCAC-ATTGTTGGGGTGCGGCCTCTCTCAGTGAAGACTGGGTGGGGGGAGGTGCTCCTGAGATTCCTGAGTGGCTTGGCACTGGCTTCTGCAGCTTTTT--CTCATCCA--GTCAGCAGCTGTGACGCTGCTGGAACACACAGAACTGCGATGCTTCCTTGGAAGTCTGTTCCAGGACGTGCTGGGAGGGCTCTCGGAGAGAGCCACAGGCAGCATAGTTTGCAAAGGATCCCTTGAGCACCTTAGCTCAGTACAGCAGCTGCTCTGAGGCAGTGTGGGCCCTGTGCAGCCCACCAGGGGAACCTATTAAGAGCCACAACACTGTGAAAAGCGCAGCAGAATCGAGCCATTAAATCTGGTGGTGGTGGtgtagttgatgttgttgttgttgttgttgttgttgttgttggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtatatatgtgtgCACGTGTCCATGCTTGCACGTGTGCCTGTGCTGTAAAATGGGAGCTGGCTGAGGAATCCCAGCTCTATCCAGCTTCACATAGGTCTCCTTCTGTCTGTCCCATGTAGTTCTTTTCTACAGGGCCTTTGGCCTTAAGAGTCTCTGTGCTTCTGGTTGGAGTTGTTGAAAGACTTAGCTCAAGGTGACAG--CAAGGCCCA-GGCAGGGAGGGAATCTGAGGGA-------TGTGTGCTCCCTTGGATGGTACTGGGCATAC--------TCTGGTGAGAATCAGATGAGGATGTTGATGGCAAGGGCAGTGTGGCCggagaggggtaaggggtatttgttcctgagaggacaaaggactgtcactggatagagaaaagacagatgtggcatataggaaaatggcagtttataaaggtaccaggggaaaccccatgttagggtgaggctttgaattttaattgggcatgttaattaggtgaatcagagggggctttggaattctgtacctcaatacttgctttgatagctggaccttgggagtcagcctcaggaggaggaattgaccaaataaagaaatagaccttgggaatgtaatctaatggttttaaactaggtggagggagtggggaagaagggcagggtctgtcagagccacatgatctagggttagagtcccttcTTT------CTGTATCCTAAGGACTTGG---------GGCTTCCTGCTAAGTGGTCCTAAGCCAGCTTCTTATGCCCTTATAAGCCTCTTTCCAGAGTCTTCCAGAGACTGACTCtgtgaatgggggcttggac-----------atgcaagttgagtgtctgcctctgtgtgtctgtgtgtgtg---------------------------gtctctctagggtgagggagctcaatgtggaattggttagggatgggctgcaggt-----tagaaatcatctttccccattgctcccccactccagtgcagaactccaaggaacccaaaaattctaagtttaaactttccaggcttataaaagtatatttgttgaggtatggggacagagtatatttattttaacagtctgttggcttgatttataacttttaaCTCCTATGATCTAGGCCCTGGAAGTTGGGGGTAGACCTAGTACAGATGAGGAAAACAGGCTCT
s HiC_scaffold_1 115699229 2111 - 233722169 CCAGTTTATCAAAGCTACATGTTAGCTTTGGGAATGGAGTGGCGGGGGTGGGAAAGAGGTTCTGTGTTGTCTCCAGG----------------------------------------TGGGTTAGGGCTGGGAAGACTCTGCTGACCATTATGAGTCAACTAATGCGCTTGTCCTCAGCAGCAAAAGGAAGACAGACAGGAAATGGAGAAGCAGCCTGTGCAGCCCTGGGCACCCAGAGGTCAGAAAGGATTGCAAGAATTCATCAAATAACATCAAAGCATCTTCCATTAGTGCTTTCTTCATGCCGGGTGATCTGCTAAGCCCCCTACAGGAATCACTCCCTCATTGCTCACAAAAACCCTAGGGAGCAGGCAGGGCTGGTATTAAAAATATC----CGAGTATTA--------------GTATGCCGCGGAGGCAGCTAGACCAAGTCCTG-AGGCCCTTCTCATGCCAGGTCCTGATCTTTCAGTTGCTGGATTGTGAGGTAGTC--AGTAATCATGGGAGGGAGAGGCTAAGGTATTGGGGGAGCTCAGTGAAGTGACAGGGCCTTGACTAAGGATTCTCACACCTATACTG-----------------------------------AGTCAGAATGTCTT--------GGCC--------AATTTGTTAAAA----CAGATTATG--------------------------GATCTTTactaaatatttcagtattttaataaCTGATATGGCCCTGGGGGTGGAAACTACTTTCACTGCCATTTCACAGGTGGGCAAATAGAGAC--TGAGAGAGATTAAGTAAATCACGGAGGATCGCTTACTCAGTGGCTTACATCCACATGGCCTGACTCTGAAGACTCAGC---CTCTCCCAGTCTCCGGTCTG----CAATCTCTAGTGACTG-CAGAGGGCTGGGCAG-TGGTTGACTGCCTTTGGGAAACTACCAGCACTTTGATAGGCTATGGATGAAGCCAGCCAGAGGCAGGTGAAGCCC-TGCATACTGCTGTTGGGGCTCACTGTCTGCCTG------CTGGCCTGGAGAA--TGCTCCAGAGACTCCTGAGTGGCTTGAAGATGACTTC-----CTTTCTGCCTCCTCCACAAGCAGCAGCTGTGAAGTTGACAAATTACTCTAAACTGTGATGCCTCCTCAGGAGCCTGTTCCAGGACCTGCTGTGATGGCTTCCCAAGAAAGCGACAGGCA-CATGGTCTGCAAACCAACCCTTTTGCTCCCTCACTCAGCACAGCAGCTGTTCAGAGGCAGCTTGGGCCCTTTGCACCCTGCCAGGGGAGCCTATTAAGAGCCACAACACTGTGAAAAGCACAGCAGAATCGCTCCATTAAGTCTGGTAGGGGGG-----------------------------------------------------------------------------------------------------------CCTGCTTA------------------ACAATGGGACCTGCCCTAGAAATCTTAGCTCAGCTCAACCCTGCCTCAATCTCTTT---TCTGCCTC-TGCAGTTTCCCCTCAAAGGGACTTTGGGTTATAATGCCTGTGTGTTTCTGGCTAGAGCTG----------GGGCTGAAAGTGAAAAGTCAAGGCCTAGGGCAAAGAGCAAATCCAAGGCAAACGATCCGTTTGCTGCCTAGCAGGGGAATGGGCATACAGCTGGGTCCAGACATGATGCTGATGAGGATGCCGAGAACAAGGATATC----------AGGAGAGAAGGGCTCCTGCTCC-----------------------------------------------------------------------------------------------------------------------GGGCctgtttatt------------------tttcccattccagCTGTATATACT--CTTTAATGG-----------------------------------------GCAAAGAAC--------------------------TCTTAAA-----------------------------------GTCAAAGAGACACA--CAAGGACCATAGCTTCTTTTCTGTAATGCCACACTTCAGGTACTTAGCAACCTGCAAATTCCCTGCCAAACTGCTTCAAGTCTGTTTCTAATGTCTGTGTAAGCTTTCCTC--ACGTGCTGTAAAGAGTGACCATGTTCCTGAGGGTGTGGACAGAGCTTGGTTATGTGGGCTgggtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgcacgcATGTCCCTCAAGGGTGAGTGAGCTCAGTGTGGGTAGAGGCAGGGCTGGGCTCTATGTTACTATAGAAGTCATCATTTCCCATAGCT-CAGTGTGCCAGTGCCAAACTCCAAGCAGCCTGAGAATtctaaatttaaacttt-caacCTCATGGAAGTATATTTGTTAAGGTAGGGGGatagcatatattttatttaacagtttGTTAGCTTGATTTATAACCTGTAACTATTATATGCTTGGCTCTGGAAGGTAGATGTGGGCCCTGTGCAGGTGATACAGAGGAGCTCt

a score=15536
s chr3           105130974 656 + 160039680 taagtcacataaaaaccctgataaatattattgacagtctgtaaatggggaaacagagacttgacag-taaatcaactggcctgtggtcaAGTTGGAGCCTAAG----------------------------TCTGTGTTTTGTAGTGTTCCCAC----CAAGGGAAGACTATTCCTAGAGTTTTTT------------------AAAATTGGAAAGAGACAGCCTGCCGGGCCTGTTTGCTCATCTCTCCCTGGCAGTGTTCCTAGGGTCTCTGATTCAGGTCCCTG-CTCCAAAGGGAGAGCTGGG-ACCCAGGCCTGAGCGTCACAGCACTGCCTGCAGATCCTGCGCATCTGTTACCTACAATGCCTGGC-ACCAGTGTGCTGTCTGGTGCCCACAGTTGGACAGCACAGGCTAGTTTTGACAAAGCGACAGAGGCTGT-AAAACAGCCGTGTGACATTGCCTGCTGGTTTT-AAAACCAAACACCCAGCCAAGCAACGTGGTTGAGTGGAA--ACTGAAACATCCCTGCTC----CAGATGAGGATG-TTTTACTTATAGAACATCTGTGTTTTCCTTTCTTTCTTCC-------ATGTGCCCATTTATTGCACCCTCTCCTGTCTTTTTTctctctccctccttccctcgtttc------------ctccctccctcttgccctctcttcaccttc----ttcctctttc------cactctctctcctctttctctgtttt
s HiC_scaffold_1 115701454 716 - 233722169 TAATTCAGATAAAGAGTCTGTGAGGTATTATCACCATTCTGTGAATGGGGAAACAAGACTTTCACAGGTAAAAAAATTGGCACATGGTCAA-TTGGGGCCTAAAATCAAGTTGGGCCCTGGGGCTACATTACTTTGAATTTTATGGTATTTCCATTCCACTAAAGGAGATtacacttagttttttttttttttttttttttttttaaatcaggagaGA---AGTGTGCTGGGGATGTCTGCTTATCTCTCTCCAGCAGCGTTCCCAGGGGTCCTGGTTCTGGGCTCTGGCTCTGTGGGGGTTGGTGGGCACTCAGCTCTCA-CGCTTGCCTGCTGCTTGCAGA--CGGCCCATCTGCTCCCCAGAGCGCCTTGCCACCAG------------------CAGTCAGACTACACAGACTGGATTTGACAAAGTGACAGAAGCTGTAAAAACAGCTGTTTGACATTCCCTGctgcttttgaaaacaaaacaaccagcaAAA----GCGGTTGAATGAAATGAAGAAAGTATTGTTGTTTCACGCAGATAAGGATATTTTTAGTTACAgaacatttactttcttttttcacttatcCTCTGTTTACTTACCcaattattt--ctgtttcttgcccttactc-ctttctcctcttccattttttctttaaaaatatgttttccctGTATTTCCCTGTTTGTGCATTCAAATTTCTTCTCTTGAAGGAcatgatttcttcctgtttcctgtttt

a score=52326
s chr3           105132477 3135 + 160039680 TCTCCTGAAAGACCCGGTTCAAGCATTCCGTCCTGCCCTCAGCTTTCC-CTCATGCCATGTTCTTATGTATCGACCCATCTCTCTAGGTTTGGGCACACAACTCCACAAACGTAAAGTTTTATGAATTCTAATGTGTAGGTTTTTTCCCCCCAAGGTACTCCTTTCAGTTAAGCCAAGGTAGAGATGGAAAAATTTAAAACAAAAT----------ATTCTCC------------------------AATAAAAGTATTCGTAAAAGGACAGGGTCTCTGGCAGCACCTGCCTATAGCCCTCCTCCCTTTTCCTCCTCCCCTTCGCCCCCATCCTCTGGCTACAGGAACTAGGACATCAGATTGGGCTTTT-GACTTTGAGCTTGTG-TCTAGCTGGGCACAGTGGTTCCACTGTGGCTCACACGCACACTTCTGTTCATGCAGCTGATCCCCACGGAGCCCCACTCACCAG--GGAGGAGCTTCAGGTTTCAAGGTCTACGTAAATAGGAGCAG------------CTCTCAGCAGAGTCATAAGCATAAGTCTAACCACCATGTCTAACATACCAGGTGGGCTTTGAACCCTATGGCTGTTCTTGGTCTTTGAAATGCTAGGTCCTTCCTCTTCTCTCCAGTTTCTCACT-------------CCCAATCCTGACTGGAGGTGCTGTTAGGTTCCCTGGAGCATTTTTTTCTCTTTGCTCCAAGGCCTAGATGGCATCCTACTAGTATCA-AATCTCTAACTTCTAGCTCCTGGTTCAAGGTCCAGCCTGTCCTGCACACTTTCCA--GCTGCTTTCTC-AGCAGCTGCCACCGAGGTTGCTCTTTGTGGTTTGTGGTCCATGATGCCTCACCGCTTGTTCTGGC-TGCCTTCTCTCCTAAATGAAGACTGTTTCCTGTTTCTTTTTACTTTCACT------TGCCTTATTACCCGTGGACTCCCTGTGGCGCATCTTAGGCTTGGCTCTGCTATAGTTACCT--GTCCAATGACACAGTCCTGAGCTGATGCTGG------AGTGTCCTGGGGAT-CAGTGACTGCTTCTGTGTTGAAAGGTAAGGTTAGATCTATGGCTGAAGGCAGC-CTTCTACTTTTT------TTCCTGAATTGAATCCACAGACAGACC-AGAGCGGGGTAAAAAAAGCTTTTAGCTTTGATTTCTGATCCCTAAAAGGAGAAGAAAAGGTGATAGATTCAAGCATGTGGAGTCCAGGGGAGGC---AGGAAAGGTTGGCTTAGGCATTTACAGGAATTTTCCTAACCATCCTCACCACACAAGTTTCTACAACCTGAGGATGGAGACAGGCC--CATTTCACTCTTGGGATAGAGTAAAATGCTCACTTCTGTCATGGAAACGCATAACGTGGGGTACTTACATTGATAAGAGtatcttggttacttttctattgctttgctaaaatagcatgaccaaagcaatttataaaaaaaagcatataatttggggctcttgcttccagagggttagagtctacagctaccatggcagggaccatagtagcaagtgggcagacatagtgttggagtagtaactgagagatcacatcttgatccacaagagtgaggcagagagagataatgtgggatggtgtgtacctttgaaacctcaaagccctcccccagtgacacactttttccaattatgtcacaccctctaatccttcccagaaagttccaccaactgggacaaagcattcaaatacatgagcctgtgggagtcataaccaccaAGGTAGGGGCTGCCACAACCCTCA-GAAACTGAGGCTCTTTGATGCTCTTCCCTAG-CATTCTGCAGTCTAGGCAAATAGAGACATTCAAGCTCCACTAGACACCTCCTTTTCATTTCCTCGATGCTG--tcctttcctccctccctccctccctcTTGAATTTCCCCTGTTTGTCTAAGCTTTGTCCATACCATTTCCTCAAGCCTCCCCCAAGCATTTTTTTTTTTTTTTTTAGCTCTGAGAGTGCAGAC----------TGTCCATGCTGGAATAACAGAACTGGAAGAAGGT---------Acagggaattttagtgtttccagtatctacagttccatctatgaggaaggtcactaaaccctgaccgacatgcatatctcttaatcccgtgggttcttcccatgtgagaagggatccaagtagctagggaggga--------gggtctctaaactgtg----------acaacatcctattccccaggcccaaagatggtactgAGCACATACTATAGAGGATGTAGATCTGACTTCTTCTGCACCTACTG-GGTTTCGCTGACTTCTTGTTCCTGGAGATGTTCTGCAAGTAGACACCAAGAACAGAACTAGCAGCACCAGCGGGATCGAAGACCTGGTGCTTCCTCTTCAGTTTTATTACCTTTCTGATTCCAGCCAAGAATGTGTTGTGATTCCAAACCCCAGCCCACAACGATGTGTTAGGTCTATTCTGGTTTCTGCATTGATTCACAATGAATAAAAATTAAGTTGGTACTAAATTTTATGGActctctctctctctctctctctctctTT------AATTCTACCTATTTGAGCTTTAACAAGATGGTGCCTGTGGGAACCGAAGGCAATTTTAATTAGCATCTTACTACAGCAAACCCAGATG---GGATCATTGCTCTGCAGTCTCC-ATTGCTGCCTTCTCTCACCCT--ATCCACCTACACCAAGTAATCATCTG---------TGTCCATCCCTCAGGGTTCGCTCCAGACATACTTGCATCACAGTTTTCCCTGGGACTACAACCCTAGCCTTAGTAGTCTGAACTCTGCCATGTTTTCGGATGTACAACACCCTTACCTTGGGGTTTGTATTGATTGCCTTGTGAGAGTAATTAACTTTCAGGTTTGTGCCTCTGCAGCCTGTTAGGTTTTCCAGGTAAGTATC-TGAGGGTCAGGACAACAGCTCAGGG----TTCTTGTTTGTTTGTTTGTTTTGTTTTTCCATAGTAACCTGGTGATGCTCGTGGGTTCCCAAGCGTGAAC---AAAGATGGGAGGTAGGGAAAGCACT----------------GGTCAGACAGTAT--GAGGAAGCATGCTGCTCTCTAGGACTCTG-TTTCTAAAGTTTCAGTGGTTTTTG-----------------------------GGCTCACACACGTGACTGCCTGAGAGTCCTAGGGACTCTGATAAAGAACATGATTTGAGAACGACTTGCCAGGACTATGATTTGCAAAA-TCAACTATACA-GATAGCAAACCTCACACAACtt
s HiC_scaffold_1 115702132 2821 - 233722169 TCTCTTGAAGGAcatg--------atttcttcctgtttcctgtttttcACATTTTGCACGCCTCTGTAAATTAATTTGTCTCTCTGGCTTTGAGTACATACTCTCCCAAATGTGTAGTTTTATGAAttccattatttgttttttgatatcCCAAAGTGTC---TTCAATTAAGCTGAGATGGGGACAGAAAATtctaaaccaaaatgaaacaatcCATCCTTACTCAACTATCATTTAATTTAGATAAATAAAAGTATGCACAAGAGGACCGGACATCTGACAGTAATTGCCTGT---------CCCCACAGCCCAGCTCCATTGCCTCCA-------GCTATAGGAACCGGGGAAGTTGTTCTCATTTGTAGACTATGCGCTTGTGGCCCAGCTCTGCACAGTGATTCCCCTG--GTTCAGAAACACTCTCCTCTTCAGTCAGCTGTACTTCACGT-GCCCTGAACTTCAGCGAGAGGAGTTCTAGGTTACAAGGTGTAGACAGACAAGAACAGGTATATTCCACACTCTTAGCTCAATAATTA-CATGCAGCTTG--ATCAAGTCTAAAGTACAAAGTGACTTTTATAACCTGTAGCCATTCTTGGTTCTTGGAATCACTGGGGCCTCCTCCAGATTCCAAGTTTTCATTGTTTGGAAGGTTTTCTGCCCCT--TTGGAAGT-CTTTTCAGTTCTCTGGagcatttcttt-tccttgtgtGATGGCCTATATTAAATTCCACTGGTTGCATGACTTTTAACTTCCATCTCTTTTTTCAATATCT-TCTTCTCATGCGCACCAGACAAAGCTATTTTCTCCAACTGCAGCCTTTCAGTTTGTCCTTTACGGCTCAATCTTCATAGTTTCTCATGCTTTGTTTTTGCCTGTCTTCTCCCCTAAActaagaatgttttctctctctttcccttcttaaTGTGTATTGTCTTATGATCCATCAAGCTACCATGGTGAACCTTAGGTGTGACACTGTTGGAACTGCCTATGTCCC----CATAGGTGTAAGATGACTTTGGCTATGCAGT----TGGAGACACTGTGATTGCTGCTGGGATGGAAAATGCAATTAGGTCTATGGGTAAGTGCAGCATTTCTACTCTACCGGTAATCACTGAACTGAACCTACGAACATACCTACAGAAAGACGGAAAAA--------CCATGCCCTACAATCCCTATAGGGATGAGAAAAGATGAGGGCTACAGGCAGAAATAGTCTCTGAGAAACCCCAGAAAGAGCTGAGTTATGCATTTACACACATTTTTCCAATC----TCACCAAACA-----------------------GACAagtcattctttccttctttggatAGAACTAGAT------------------------------------------------AGAGAAAATTG--TACTGTTCTTCC---------------------------------------------------TTGGGG------------AGGGAATGGAATCTCC-----------------------------------------------------------------------CTTTTCCTGTGGAAATGTGGTGGAG---GATAACATGG--------------------------------CCCCTA-------------------------------------------------------------------------------ACATG-------GGGAGT----------AGAGAAGGACCTGTCACAGTTCCCAAGAAACTGGAGCTCTTTCGTGTTCTTCTTTAAATCTTTTACAGGTCAGGCAAGAGGAGAAACTAGGACCCTTCTAGCCacttcattttccttccttt--tgctgaCTCCATTCCTCACTCCTTTGTTCC-TCGTGAATTTTGCCCACTTGTCTAAGCTCTGTCCTCACCATCTTCCAGAGTATCCCTTTAGC----------CACTCCTTAAACCTGAGGGTACACACATTGGTGGTATGTTCACCTTGGGATA-CAGACTCAGGGGAAGACCTGTGAAAGGCAGGGAATTTCAGTGTCTCAAGTATCCCGACTGCCATCTAGGACAGACGTCCTCAACTCCTGATAGACATG----TCTGTTTACACCGTG---------------AGCAGAGGcataaagagaaagaaggggaTACCACAGAGGCCACTCAAGCATGGAGTAAAGGGAAGAAACTCTGTGACC------------TGGT-CTGAGCCC---CTATAGATGCTGTAGACTTGTTTCCTTAT--ACCCATCGTGGTTTTGCTGGCTTCCTATTCCTGGAGATGTTC----------CTATAAGGGCAGAAGTGACACCGCAAATAGGATGGAAAACCTGG-GCTTGCTCTTTAGCTTTATCACCTTTCTGATTGCAGCCAAAAATGTGTCGTGATTCTAAAACACAGTCAGGAATGATGTGTTAGGTCTATTCTGGTCTCTGCATTGATtcacaatgaataaaaattaagttGGTACTAAATTTTATggactc---------------------atttaaaaaaaattct---tctttgaGTTTTAACTAGATGGTGCCTGTGGGAGTCAAAGGCAATTTTAATTAGCATCTTACTACTGCAAAGGGAGAAGCCTTGATCATTGCTTGGCAACTTCAGGTTGCAGCTCTCTCTCCTCCTTGACCCACCT---CCAGGTATTGGTCTGTACATATTCTATCAGTCCTTCCATGTTAGCTCAAGACTTGTTTGTATTACAAGTACAC--------ACAGCCCTTTTTTTGCTATACCAAAATATGACATCTC--------CATCTCACCCCATTCTAGG------------TTGCCTTGTTTTAGTAATTAAGTTTTAAGTCTGTACCTTGTCTTCCTGTTAAATTCTTCAGGAAAGTAACTTGAAGGTCAGGGTAATATCTCAAGGGGTCTTCATATTAACCAGTGgctt---tttttatatattaa--------------tgGTTTCTCAAATGCGGACATGAGAGAAGTGAGAGAGTAAAGATACCCAGCAGGAATTACGTAGCTCACATGGTGTTGGAAGAAAGA-GCTGTTTGCTAGGAGTATGAGTTCTCAAGGTTTAGTGGAACTGAAAATTAACtgagaaatacatataaaatgtgGCTTTCA-GCCTTATTCCCTGATGCATATAGTGATTATGATGCAGACTaagatttggaaataattttctaggACCATGACTTGCAAAAGCCAACTCTACATGGCAGGAAATaccacacatttt

a score=26934
s chr3           105136700 1197 + 160039680 AGAAATGGGAATTTCTCAACAAATTTTAAGAAAACACAAATAGAATAATCTCTGAGAGCACACACACACACCAAAATGGTAACTAGCAAAAATACTTGT-----------AAACGTCAGACTGAAATTG-----CCTATTTAATTTGAGCTGGTA----------GGCTTAATTCATTTATAATTAATCCCTGGTTTATTCTCAGCCCTGACCTGTTTGCTTCTGACCTTCCTTCCTGTCTATCTGCTCTCTGCTGTTTCTGTAGATTTGCTCATTAACTGTTGGATTTTACAGCCCTGAGGAAGCTTTCCCAAGTCAGGCTTCCTCTCTTGGGTGACTCTGAGCCTTCTG------CCTCCCCAGCCACCTGAGCCTCTGCCATACCTTGTAGGAACATTCTTTCATTGTGATGTTTTAATTGGGACTTAAGAGGCAGAGTAAATATTTTAAATGGTCTCATAATTCTTTGCATTTATTTAAAAACACAGAGTATGATGCAAATAAATAAATAAACGTATGGCTTATTTTGTCTTTTGGCTGACTCGAAATAGCCTCTAGACTTCAGTTGTATAGTTAGCCAT---TGACTGAGGAAAAAAAAACAAAAAACCCAAATCCAAAACCAAAACACTAGGATGCACATAACTAACCCAGTGTGAGTTTATAAATGCATCGTCAGTGTTTAGACCACTTTCTAAATCT---TAAGAAAT--GGATGCCACCCACATCTTCCTATATTAAAATGTAAAAAGAGTCCTGGTATAATTAACTGCAGTATGTCGAAGGCAATGTCATCAAACAGAAGGACACT--CTTTTGAGTGGAGTTAAAACTGAGCCCCAGGTGAAACCTTTTTCCAGTGTGTTTACCTGCTTATCCTTTTTCTCCTTTTCTTTCCTTctcaggcactcatctcaggcctgcgatctccctgctctctcctctgaagcagtgggattacaggtgtgtgccaccacagctggcCTTTCTCATCCACTCAGTAGGTCTATTCTTAGAATAGAGGACAGAGGTACCTGAATGTAACACTTTTCAGGAAACAAACAAAAACTTGCAATAGACATAAT------TTTCAAATTTTACAATTGGCTTCTTAAGCCATGCTGGTGGGTTTTAGTATGTTTATATTTTTGACTTATATTTCTTGTCCCTTACTAAATTTTGGGGAGCTGGAAAAAGGATTTTGTGATCATCCTGATTAACTGTTGCGTTAGCTTTT
s HiC_scaffold_1 115705342 1035 - 233722169 agaaatgaaaatttctcAATGACTGTTGAGAAGATACAGATTGAATAAATTCTGACAGCACACACATGTA--AAAATGGTAACTAATGAAAATTCTTGTGTCAAATGCAAAATCATCTAACTGAAGCTGAgcagttttgttcatttgttttattattatttttgtggttttattcatttataattaaTCTTAGTCTTATTTTCAGCATTGGTCTGTTTGCATTTgaccttcctttctgtcttcctgctcTCTGTTGTTGCTGTAGTTTTGCTCATTATTTGCTGAATTTTATAGCCCCGAGGG--------------------CCTCACT----GGCTTTTGAGCCCCCAGTTCTCACCCTCCTTGCTGCCTGAGCATTTGTCTTGCTGTATAGGAACATTTTCTTACTCT---------ATCAGGGTTTGAGAggcagaaaaaacattttaaatagtc----------ttgtacttatttaaaaatataaaatacaagg----taagtaaataaatgtgtgGTTTATTTTGCCTCCCAAGGGACCTAAAAT--CCTCTAGACTTCAGTCACAAGGCTAGAAAGCTATGGCTAAGCTGAGACAGATGAG-----------------------GTTAGAATACACATCACTGACCCACTATGAGTTTGTAACTATTTCCCGTGATTTTAGATTAATATATAAATCTCCCCAGTAAATGAGGATgtcattcaaa---------attaaaatgtgaagaaaGTCATAGTATAATtcactttaatatatttaaaatgaggaTGTCAAGCAGAAGTTTGCCTACTCACATGTCCAGCTAAGAAGGAACcccaaataaaa-ctttttccAGTACATACATc----tataatttt-----------------------cacatatttt------------------------------------------------tgtgtA-------------------------------------TAATGTTAGAATAAAGAGCA-ATAAACTCAAATAGAATGTTTTCTccagcagaaaacaaaatttgcaaCAGAAATACTCTCATATTTTGAATTCTATACTTGCCTTTTTCACCTCATCTGTTaggtttttattcattcata-ttttgtctcagaTTTCTTCTACCTTACTAATTGTTTTTTA------------CTCTTGTAATTTTTCTGATTAACTGTTGCTTTAATATTT

a score=76827
s chr3           105140647 2701 + 160039680 CAGACATTTTGACCAGGGTA---CTGTATTTCTTGTATTACACAGCAGAGAAGG-CTAACATTCAGAGGTGTGAGAGGTGTAGAGCTAACTACTTTGGGCAGCCTACCTTCCAGTTGTAGGAC-------------AGGTCTACCAAATGCTG-----------TTGCATTACCCTCTGCCTTAGTTAGTTAGGATGGGCCCTGGAGCTACAGG--CCTTAGGTCA----TAGAAGACATCAGC---CTGGACTTGATATAGAA-GGACCAAAGAGAGCAGCCTCTTCACTTATGTTCTTCATTATAAATTTGAATAAAA-AGTTACTCTTTACAGATATGGAACTTAAGTGACCAATTAAGACTAGAGGTCAAAATCACCGAAGGATGATGCCAACTtttctacttaa----gaggacttaaagatgataattggttggagatgaggaggccaatttaaaaggatgtgtcttgaagctattttgtacagagaatagtggatttttattttaaatattatgtt----cagagtaggttggagccaagggccattggggaGACCTTTTCTCAGACACTGCCCAGTTCTGCCATTGGTGCGGGCTGACCGTAGTCGCAAGATATGTATTTGGTCTTCAGTTTGGTCGCATGCACGCACTGCTGTCTGGTGACACACTGACATCCTGAGAACACAGCCTGGTTGGGTACCC--ACAACT-----GGCTTGTTGGAAGGAAGGGGCCTGGGTAGTGAGTCTGAAGCACTCCC-ACGGAGAGTCT-AACAGGATGAGCGGAGCTTGGGCATCTGAACTCTGGGATGAGACAGTGCTTAGTGATCAAGAGTGGATAAAATTCCATTAGAGGTAAACGTTGTCAGACAGCGGGCTGGAAAGATATATTTTAAGCTGAGAAATTACTTAATAAATTCAGCCCAACACCCTGTGACATTTCCCACAAGACTTTAATGCTGTTTACAAATTCCAGAGAACGCCCTGAGTCGTTTCTGGCATGGGCTTATGATTTATTTCAAAGGAAAATGGGACAGAGTGTGTGGGTTTGTGTTTAATGTGAAAAGGGATTTGGAGATGAGAAGTCAACTGGCATGAAAGATTGCAGGGCAAATGGAAAACTGTGGAGCTTGTGGGTGGCCCTGCAGCACACACGAGGGCACTGAGCAAAG-AGGGGCCTCTCACCACTCTAGGGCTAATCAAACAGTACCGCTCACACAGGCCAGTGATGTGTTCAAGAGCCTGCCTTAGGAGGTGAC------TCG--AGATCCAAGCCTTCAGAAACCCTTTAGTTTC--AGACTTTCCTATTGAGACCAGG-TAGAATTTCCTCCCTAAGGAGGGTGGCCACTTATATTCTATTCTCCACAAGGGTCAACATTCAGAGTTTAAGGACCTCAGTTAGGAATTCCTGAAGGAAGGAATTTCTAAAGAAAATGAGGGCTTGATGGTAGCGGGCTGGGATGGGGCTGGGGTGGGTGATggtgagatggctcagtgtgtaaaacgctttcagagtaaacctgataacctatgtttgatcccatagcagtgtggaaatagagaaacatcacaaagtcaccctcagacttccctgtgtgcatgctctttccaaatgatgtacacagacacacacacacaTGTACACATGGTACATATAATAATAAATAATAGCAATAAATGAGAGCTTGAACTAAGAACACTAGGAAGAGTTGGAGATGTGTTCTC--TATCTGATTCTCTGTTTCATGGAAAAAGAGGGGCAGGTTAGGTGGCATTTTGATTTAATCGGCCTGTGAGAAAAAGACGAACTTGTGGTCTGGAGTGGGTATACCCCTAGTAGGAAGGTTAATGGAGCCTCAACTGTTGGGTTATGTTGGATGCAGCCATGTGG-----GGCTGACA-GAGAGAGAAAGAAAGGAA-------CTCTCTTTATCTCTGGCTTCTCCCCCTCTCCTGGAAACTTCTGGTTTCATTCATCTTGTTTGCCTTGGAGTATGTGGTCTGAATGGGAAACGAGGACAGTGACGTTCCCCATCTTTCTTGGGG--AGAAAAATGACATTCCATTTGGTTTTGGAAAATACACAATATTCCCCTTATAAAATATTCAATCACTGTCATTAATCCTCCTGCCTGAGCTGGCCCTGCCCCACTTAGGCATGAGTGACAGGGTTTTGGCAATGGCTATAGGCTCAAGAACTT----GGCTT-TCTTTATTGATGATGTAATTAGAGGTCCCAGGGTCCTGTGTCAGCTGACCAGAACTCTCTAGGGTAAGGCTCAGGGTACAAGGTGTCCCTGGCACAATGTGCAGGCTTAAATGGAAGGA----CA-CCAAACAACCTAGGGCCT-CTACAGCTGAGCTAAGGCTTTATAGGAAACTTCTGGGTCTTGATAAATTAACACCCATCAGCATAACAGAGAATGCCACTCAAAGAGTTCTGTCCTCCGTGCCAAAGCACGTCTATCTTCAAAAGAGGTCAG----TCCCACTCTGTACCACTGTCTGGA-----TCTTGGGAGTCTCTTCCCTGTATGGTCACCAGGACATAAATTGATGTTTTCCTTCCTCACCTCTTCTTCTTTGCCCC-CTTTACACTTATTGTTTTAAAAATTATTTCCCttcagct---ttaagatat---tgacaggtaaaagttgcatatatttatagtatataacatgacattttggtatttgtatccattgtaaagtgattaaataaatctgcctaacatagccatgatttaacataA--AATGTCATACTATGTAAAATAGAC
s HiC_scaffold_1 115714118 2427 - 233722169 CAGATCTTTGGACTAGTATATTACTACCTTCCTTGTGTT-CAAACTAGAGAAAAACTAACATTCAGAGTTGTGACAAACCTAGAATTAATGACTCTGAACA-------CTGGAATTATAGCACTGTGACCAATCCAGGACCCGACAGATGCTGAACGGTAGCTACTGCAACACTTCTTTCCT-----GGTTAAGATGGGTTTTGGAACCAAATATCCCTGAGGCCACAGCTAGAGGACAGCAGCATCCTGGGACTGACCCAGGATGGATGTAAACTGACAGCCTCTTCATTTCCTGTCTCCATTTTAACTTTGCATAAAACAGTTACT-TTTATGGATATGCAATTTAATTGACTAAAT----CCAGGGATCAATAGTTCCTAAGGATAATGCCAACATTTCTATAAAAAGGAGGGGCTTTAAAGTTGACAATTTGTTGAAGAATAGGAGGCAGGCTTGGAGGAGT-TGTCTTGAAGCTGTTTTGTATAGAAATTCATAG--TTTAATATTAAGTACTATGTTAGTTTGGGGTAGATTA-AGCTGAGGAGGATTTGGGGGACTTTCTCT------------AGTCCTGTCACTGGTAACACCTGAATGTGTCTGTTATATTCCTAAATTGAGTTACATCTGGAGGCATGTA---------ATGTGATGCCAGTATGCCATC---AGAATATAGAATTGTTGGTCCCCCTGAGAACTCCAAAGAACTTCTGCAAAGCAGAAGCATGACTAGTCTGTCTGAAATCTACCAGACTAAGAGCCCCAACAGAGCGAAC-----TTGGGTATCTGCACTCTGAGATGGGAGTGTGCTTAGCGATCAAGAGTGGATAAAATTCCATTAGAGGTAAATGTTGTCAGACAGCAGGCTGGAAAGATATATTTTAAGCTGAGAAATTACTTAATAAATTCAGATCAACACTCTGTGACATTTCCCACAAGACTTTAATGCTGTTTACAAATTCCAGAGAACACCCTGAGTCGTTTCTGGCATGGGCTTATgatttatttcaaaggaaaatgggACAGAGTGTGTGGGTTTGTGTTTAATGTGAAAAGGGATTTGGAGATGAAAAGTCAACTGGCATGAAAGATTGCAGGGCAAATGCAAAGTAGCAGAGCATGTGGGTGGCCTTGGAGCATGTAATAAGGGATTGAGAAAGGAAGGAGCCTCTTACCATTCCAGTGCTAATCAAATAGTTCCATTTGTAAAGGCCACTAATGCATTAAAGAGGATGGGTTTGGAGGCAGCGCTAGATCGCTAGATCCGGGGTTTCTGAAACAC-TCAGTCCCAAAGACTTTCATATCAAGAAGAGGCCAGAACTTCTGCCCTGAGGAGGGAGGCTGGTTACATTTCATTCTCCACAAAAGTCAACATTTAGAGGGCATAGTTTTCA--------------------------------------------TTGACAGCA--------------------------------------------------AAAACAACTTCAG---------------------------TTAGAGCAA---------AAGAAAGCAttctgaaatc--------------------------------------------------------------------------------------------------aaataatactcCGGGCTAAGAACATAAGGAAGGTCTGGGGGCAAATTCTCCATGTCCAATACTCTGTTTCTTGGAGACAGGGGGATGgat----ttatgatttaattttgttgaCATGTGC----------------TGGTC--ACATAGGTGGATCC--------AGGGGCTGTGAG--TTCAAGTACTGAGTTAGGAGAGTGGCAGTAATGTGGGTCCAGGCTGGCAGGAGAGAACAGGAATGGAAGGatcctctgtcttcctttctgcCTCTCCCTACTTTCCTAGAAACTCTTAGCTCCATTTATCTTGTTTGCCATGGAGTATGTGCTTTGAATGGGAAACGAGGACAGTGACATTCCCCATCtctcttgggggaaaaaaaatgacattccATTTAGTTTTGGAAAATACACAATATTCCACTTATAAAATATTCAATCACTGTCATTAATTCTCCTGGCTATGCTGTCCC-GCCGCACTTAGGCATAAGCTACA-GACTTTGGCTGTGGCCACTGGCCCAGGAAGCTCTCAGGCTTCTTTTTATGGACAACATGATTAGAAGCTCTA-GATCCTCTGT----------------------------CTCCGAGTATCAAGCGCCTCCAAAGCAACCTCCTGGCTTAAAGTAAAAAAGCTTCATCCAGTCAATCTGGGGCCTCCTGTGACAGGGCTGAAGATTTATGGAA---TTCTGGGCTGTGACAAATTAATTCCTATCAGTGCAACAAAG---------------GTTCTGTCCCACACCCCAGAACTCTTCTGCCTTACAAAGTGGCCAAGTTTTCCCACTCCTT--TGCTGCCTGactttcttccttaaaattttttttctgatttgctat---------------tatttctgtttcttctctgttttttattgctttaacttttacttatttatttaa-------ttttcctcaGTTCTATTAGGGtatcactgagaaataaaaattatatatgttttcAGTGTACAACATG---TtttgatatatacatacattttaaaatgattaaagaaagcTAGTTAACATATACATCGTCTTATATACGTATTGTGATAACATTTAAGATATAC

a score=40644
s chr3           105143978 2224 + 160039680 CTCCAGACTGACTCTAAGGTGGCATTCGGTGAATGCTCCTTAGGACC--TTTGAGGAGGAGGGACCCTTT-ACCTGACACTGTAAGGAGGCAGGGCAGGGAGTTGTT------TCCTGGAGGATACCCTCTTCCGGGATAAGGATGACGCCTTGGTCCACCAGA--CCCCTGTAAGTCTGACTT-AGACTCTGAGGGAAGCTGTTGAGCTTCT-GTTA---GGTTATTTCAGCTCCT--CTGTACCCTGTCTCACCCAA------------GTGCATGGAGCC-TGGGTGGCTG----CCTTTGCCCCACGGCTTTGGGTACCAGGAC----------------------CGCATCTTCCCTCCTATCAGG---------------CAGGGCAGAAACTTATA-ATGGTCT----TCACAACAaatttcaaactgggatcacagagcttgggagatcatgggagccatcaactacttcctgtctaggatgaggacagtggaggtcagggagttgagaacccagctcccacagtttattagtgactgagctggccttacattccagggctAAAGCCAAGCAAGTGGCCATCACCGACATGA----------CTGCCCAGCAGCTCTGTGAGGTTAGCAAAGCAGAAAGTACACCCATCCTCCCCACTGTGGCAAAATCCTGCATGGTACTCTGAAACCCAACTTCTTGGTCCTTTTGGGATTTTCATAGGGGATGTTG-GGTATTGAAGGACCTGGC-AGCTGCT----GGCCTGGGTAAAA----CCAGCACCTTCAAGATCTCTCTGGAAG----CAACCAAGTTCAGTGTTTCAGGGCCTTGGCTACCTCAAGAAT-----------------GGGTAGTCTACAGTGGCTTGAACGACCAGATCTCTTCAGCTGTAATAAGGAATGACAGTCATGTGCTATTTGGAACATTTGTAGAACTGCTGAGTGATGAGGGAGG----AGAGGGGATACTT-----------------------------------GGGTATGGAGAGAGATCTATCCT------CTTAAATG--------GCATGATACTTGGTCTTGTTGTCTTCCGTCCCTTTCAGCATTGTAATGCTACAGTGCTAAAAGGAAGCATTCTGCTGTCAGATTATAACCTTTCTAATGAAAGGGTTGAGCTACTGGCTTCAAGAAAAAGAAATAGTAGGAGCTATTTAGCTCTGACATTGTACAGTCCCCATCTGGGCTTGGGCCTGGGAAAGTAGCTAGGATCCATTGTC-------------------------------------------------------------------------------------AGCTA-----------------------------------------------------------------------------TCAACT------------------------------GGGGCAGCCCAC-TGGGCACCAGCCTCCT------------------CAGGAGAAACACAAGGAGGCTTAAACATTCCAATAAGAATGAGGCCAAAG------CCGAAG----AAGCCATGGGATCCAGGACTGAGCAATTCTCTTTTATCTCAGAAAGACAAGTGTCAGAGCCCTTTCTGTCACAGTGTCATGGGCTGACATACTTCACCATAGCACATGCTGGCAGAGTATTCATTAGTGATGAAGGGGCCAGTGCACATGATCCTGCTT-GCATGGTTTAGGAGCTGATGGGG-TGAGGATAGCACCCCACCTTCCACAATCAACTCTTTCCTCCTGGAAGCAGTGTTTATCCCAATACTGGCTTGGGGCTTCCT---------ATGCATAAATGATTCAGGTTCTGCTTTTTGAAAGCTTTAAAGCCCCATCTCTTTTTTTTTTTCTTCATCCAGGAGCACAAACAGCAGTCTGAAGCTGGAATTTAACACCCAGTAAAGCTTTCAGCTTCAAGAATAAAAGGGCAGT-TCTATAAACAGCACACAAATCCCATA-------------------CAGCTTGGCCAGGCTGAGGGAA--GTAGAGAGGGTGAGGACTGCTGTGTACTCATCCGGGGACCCAGGTTGCGTCACACCCTTTTCAGGGCTTGCTGT------GGCCCCACTAGGCTCCTGTGATACAGTTCTGGAAAT-----Agtcagctttcaggcactataacaaaataaaagacataaaaactttataaagagaaaagacttattttggcccttagatttagatgttcctatccagggttagacaaaaccatcactttgagcctctg--gaggggtgcctggcagtgagaggcatgaggcagaggaaacggcctaccttatggctggaaagcaagagaaggagagag---gcccaggatcctgcactctttgagggcatgactccaatgtcctaaggatgccccactatgttatccctcttacaagttgtacctcctccc-atagtaccaccatagttctgtggcacaagagtccttggggaacatatccaaatcacagtaGTTCTCTAAAAGCCCAGACCCTGATGACCTATTACCTCTAAGGAAGGTGGGGTACCCTTTCCAGGGCTCATGGTCCCAAGTCAAGACT
s HiC_scaffold_1 115716669 2513 - 233722169 CTCTGAACTGACTTGAATTTGGCATTCAGAGAAGGTTCCTGGGGATCCTTTTGTTGGAAAGGGATCCTTTTGTCTAACA----AAGTGGGAAGGGTAGGAGGgtgttcttttttcctggaaGGAAA--GCAGCAGGAGTGAGGCAGGCACTTTGGCCCACCAGATTCCCCTGTCAACTTGGCCCCAGAGCTTCAGAGAAGCTGGTTACCTTCTTGTTACCCGAACATTTCA-CTCCTTGCTGGAGACTGCCTTGCTCTGACTGTGAAGAGTGTGTGTATAGCCATGATTAACAGTACCCTGTTGGCCCAGGGCTC------CCAGGGCAGATCCTTTTCTGATGATGTTTCGC-TCTCCCTCCCCTTCAGATCCTTCCAAGAGTATCTGGGCCTAAAAGTATTTAGGGTCTGGTTTTGGAGGACATTTAGAAC------CACAGAGTTGGGGAGACACTAGGAGCCATTAACTCCTTTCTTTTTAGGATAAGGAAACTAAAC-TCAGGAAGATGAAG-----TTTCTTGCAGTTAGTTA-TGGCACAGCCAG-----------------------ATGTAAAGGGCTGTTACCAACATGGAACCGGTGAGTTTCCTGACAGCTCTGTGAGGTCAGTAGAACAGGCAGATCAC--ATCTTCA--GATGTGGTGAG-TCCTGGGCAGTGCTCTGAGTCCTGCCT-------CCTGCTGCGATTTGCA------GTACTGTGGTATTG-----CTTGGAGAGGTGCTAAGGGGCCCAGACTACATAGGCCTGCActgtcttgatttttctgtgatAGTCCTGCCCCTTTTAGTATTTCAGGGTCTCAGCTCTCTCAAGAATATGAATGAATAGGGTCTGGCTGGCTTGTGCTGGCTGGGAATTGTAAGTCTCTTTAGTTGtaagaaggaatgaaaaatgcattttattctgAAAACCCACAGAGTTAATAGGGTGTGAAGAAGGGTTCAGATGGAGAACTTTTGagcctatggcatgtgtgctgcgGCTGTGCTGCAGCTCTGAAAACAGAGTCACTGTGACTGCCTTGGATGTTCATTGAGCTCAAGTCTTGATCT-GCTATCTGCCACCCCTTTCAACACTGTAATTCTATGACCCTAAAA--AAATACTCTG-------ATTGTAATCTTTTTAATGCAAAGGTTGAG-TAGTGgcctcaagaaaaataaattataggagAC-TTTGACTCTGAAACTTCAAATCCCTCA-CTGAGGTTGG--CTGGAAAAGTGACTAGAATCCacagtcctttttttttaatttttaattttttactttttctgatgCAAACATCTCGTTACATAGTACAGGCTAGCTTGAACTTGCTATTTATAGCTAAGGCTGGACATTGAACttcagattctcctgcctcagcctctgtggcAGGATCATAGTACTGCGATCTCAAGTACTGCTCCACTCTGCCTGAGTCCATGAGGGTTTTACAAAGGGGAGCAGCACACCTGCCCATGGGCTTCCTGGCCTGGCCAGTTGGTTTCTGGAGAGGCACaaggggtttttaa---------aagaatgaattaaaagaacaaatcaaagctACATGACATGAAAGCCAAGACACAGC--TTCTCTCTTATTAGAGCAAGACAATTGCCAGAGCCCTTTTGGTCCTAATGCAGTGTGCTGCCTCTTCTCACAAC-GCTCTCCACGGCCGTAGGTTATTGAATGCTGAAAGAACCAATTTATGGGATCCTGCTCAGAAGGGCTTGGGGGCTGATGGGGGTGAGAACAGAGCTGGACCTTCCACAATAAACATTTTCCTTCTGGAAGCAGCTCTTATCCTAATACCAGCTCTAAGATTCCTGTAATGCTTATTCATAAATGATTCAGGCCTCACTTTTTGAAAGCATTAAagctc-------tctctttttccttcaccCGGGAGCACAAACAGCGGTCTGATGCTGAAAGCTAATACCCAGTAAAGCTTTCAGGTTCATGAATAAAAAGGCAGCACCTATAAACAGCACACAAATCCCACATCCAACCAGTAATAGCTGGCAGCTTGGCCAGGGTTAAGGGAGGGTGGAGAGGGAAAGTACGG-GATGTGCCC-TCCTAGGACCCAGG-AGCACCATGTCCTTCCCAGAGGGTAGAGCAAAGGGGGCTCTATCAGATTCCTGGGTTGCAGCTCTCTTAATTCTTGTATTAACTTTCTACCACTATAA-AAAATAGCCAAGATAATGAACTTAGAAAAAGG------CTACTGTGGTCCATTgctttggaggttccagtccatgattAGG-AAGAtcattattttggatttttagtGAGGAATGCCAGATGGTAAAGAGCGTGTGGTAGAGCAAACCACTGGCCTTATAGCCAGAAagtaaaagaggaagaggaagtggccaGGTTCCCACA-------AGGACATGCCTCCAAAGGTCTCACTTCCTCCCACTAGGGGCCAGTTCCTAAatgttccaccacctcccaaaagcATCACACTGG----ATGG-------------GGGGCTCTTACCCAAACCCCAACAGTTCTCT--GAGTCTAGAGTCTGGTCACTTA-------TGAAGAAGTAGAGTCACGCTTT--GGGGTTTGTAATCCAAATCCCAGGCT

a score=42881
s chr3           105151034 1723 + 160039680 AAGAGTGAAAGAGATGGGGGAAGGAAGGCTGGTGTTGGAGGGGGGCAGGTTTCTCTTTCTTCTACCTGCATGAAGGACCGGCCCAGGACAGCTAGACACCCTGTC------------------TTCCAGGCTGGATTCAAACTTGATTTGAAGACTGTATAAGCTAAGTAGAAAATTGAGAGGACA---ATCCGAGAGTTGC---TCACTCACCAAAACGTGGCATCAAGTTGGCAAGGCCGAGTCCTGTTGTGGAAATGTGTATGAAGAAGTTCTTGCACCAAGCCTCTGGTGTTCTCACAGGAAGGGGCTGGACTACACCCTTTTCTAGCAAGGTAGA---------------------TCCTACAGCAAGGATCCTG-GGCTGGGG--GAAAGCAGGAGTGAGGCTGGCCACATTCCGACAGCTGTGAACTGGCGAAGGAGTCTGGGCTAGAACACTGTGAGCAGCAGAGCTTGGGGTATGTGAACCAGCAAAGTACACACCTCCTGTGGGAA-CCTTCCAGAGGCCCCTGGCCTCCTCCCTCCTTCTTACACCCCCACCTTCTGCCAGTCTTAACTTA--ATACCGT-TGACAGTTACTTGTTCACATTTCCTTTCCTTATGTAGAATGACTGAAAG--CCTGGAGGGACTGT-CTCTCTGTGTTCCGTCCC--TCTGCCTGGCAGATAACAAGAGGGCAATAAA----AACAGGTAAGTCAGGCTGAATGCCCTCAGAACCAAGCAGGCTCAATGGAAATGCTATCTCCTTTCTCTTCTAAGTGGTGTGACGGTTGGCTTTGGACGCTGACGATGGAGATTGCTTACTTTGTACATTT-----TCCAGTCCTTGGTCCACCTTTGCTCCTC---TCCCCTCTGTCATGGGCCCCTGCCTCAGGGAACAGAAGCTTT-ATGAAGGAACCTTTTGGTGCTGGGCTTAATTCAGCTCAGCGTACCTCCACCGGGAGT---AGCTGATTCAGAAGCCAGAG-------------------------------GGCGCTGCCCCG----CCTCCTCTAAAATGCTTGGCTAAGGGTTGGCTGCCGGAGGTGTGGCAGTCTCACTCCACAGCCC-----CCTCACTCTA---GCCCCAGCTCAGACAG---AGCAAGGACTGATTCGATACAAAATTATCTCTGCATCCTGCCAAGGAAAGAGCAGGAGGGGAGCCTCTTCCTTGGGGGTGAATTATTTAATCACTCGTC-TTCCCCTTGAATCAATGCAGCTAATGAACTTTTTTTTTTCTTTTTTCTTTTGCCTCTTCCTCCTTCCCCTCTACCACCAGCCTCTTCTTATTCAGATTTCT--CCTGTCCTCATCCCAG-ATCAGCAGGGACTTCACCCAGGGAAGGCTGGAAGACTTTACACCCCAGCCTTG-TCCCACAGGGCTGCTTTTCCTCCCAGGGCA----CAGTCTGCTCTGA-AATAACACTGGTGTTAGGCCCCTGTGAATGGTAGACTCTGCCAGTGTCACACAGAGGCAAGGCCCTCCAGCTGCCTCTGAGAGTGAAACTTCAAAAGTAGGTGGTTGGGGTGACAGG--AGGAAGGGAGCTGTGCAGTCATTTGTCATGGCTAAATGGAAATTTATCGTTATAATCCTAGGGCTATAGCTAGGCT-----------GGCAAGGGGAACAGAAATCCAGATATTTCTGGGGAAAAAAAAAAACCAAAAAAACAA--GTCTCTCTAAATCAATCTAATGGCTGCTGGTTCTG--GTGGCATTGGGAGTCTTGACATCTCTGGGATGTGA-----TAGCCCGAGGTTAGAGGCATGAAGAGCTG----GCTCATTTCCCAGACAGCCTCGCAGGTGTCA
s HiC_scaffold_1 115722583 1786 - 233722169 AAGACAGAACATTACAAGAGGAGAAAGGCT-----TGGCGGAGGGC-------TCATCCTTCCCTCTGAGGGCAGGAGCTGCGCAGGGCAGTTGGACCTTTTATCCCCAGTTGGAACCACTTATCCCCGTCTGGATTTGTGCTTTATTCTAAGGTCATCTGCTTCAAGAGTTACTTTGAAAGAGAATGCCTCTAAGAGTTGTCTTTGACTTCCAAAGACATGGTACTCAGTGGACAGGGCAAAGTCCTATCATGTTGATGTGTGAGGCAAGG------CACCAAGATCCATATGTTCT---GGGCAGTGCTTGCAGTATCACTAGTTTCAGCAAAGCAAGACGTGGGCTCGagtcttcctctccctctccaggGATCATGAGGCTGCAACAGCAAGTAGGAGGGAGGAAGAC------------------------------AGTAAGAGCAGGGACACTGTGAGCTGCCTAAAATAAAACATCAGGAC-AATTCAGCACCCACTTTCCCTGGAAAACCTTCTAGACATCCTTTGTCTTGGCCCACCTTCTCATCCCCTGTCTGTCTTTCAGTCTTACCTGACCATATGGTATGGAAATCACTTGTTGACATTTTCTG-CCTCAGATAGAGTGACTGGAAGGTCTTCAGGGAACCATGCTATCCTTGTTCTCTACTGATATGCCTAGCAGGTAAAAAG-GGGCAATAAATGTCAGTTAGTCAATCAAATTGAAAGCACTTGGCACCTAGTAGATACAACAGAAatgctattttcttctt--tctgcataGTGCCACAGTTGACT--GGAC-TTGAGAATGAGGATTGCTCACTTTGAATATGTAAAATTCCAGTGCCCATTCCACCTTCCCCCATCAATCCCCCTCAGTCATGCGACCTAGCCTCAGGGAGCTGAAGCTTTTATGTATACTGCTTTTGATGTTGAGCTTAAGGCAGCTCAACATTCCTACATCCCAAATTAGAATGAATTCTAAAATTAGAGTGGGGGTCATTTGCTTTGAGACACGTACCATGACCATGTCCTGTACCCCTCGATCAGTATGCATTGTTGAGAGTGGGCTGCAG----------AGTCCCACTCCTCAGCCCTTCACCCTCTCTTTATGAACCTCGGCTCAGACAGCCAGGCAA--ATCACTTGGCTATGAAATTATCTTTGCTTCCTGCTAAGGAAGGAGTCAAGCAGGGGCCTCTTCCTTGGGGGCGAATTATTTAATCAGTTGTCTTTCCCCTTGAATCAGTGTAACTAATGAA---------------TAtcttctgcctcttcttccttcccctttgCCATCAGGCTCTTATTATTCACATTCCTTCCCTAGCCTgttttctgtgtcactgaggacttTACCTAGGGGTAAGTGGGCTGCATTGCAATCCAGCTTTTCTTCCATCGGTCACCTCTTCCCTTCAAGTGACAATCAGTCTGTTCTGAGAGTGACAATAGCTTTGAGGGAATGTACATGACAGAACCTGCAATTGTAGCACACAGGAAAGACCCTTAAGCTACTTCTGAAAGGAAGACTTCAGAACAAGGAGGTCGGGgccagagggaggaaggggagcagCAGAATCATTTGTCATGGCTAAATGGAAATTTATTGCTATAACCCCAAGGCTATAGCAAGGCTTCAGCCAGGCCTGCAAAGAGAACA-----CTAGCAACTGctggggaaaaacaaaaagcaaaaaacaaatgaCACCCCTAAATCAATCTGATGACTGGCAGTTTTTCCAAAGCA-TGGGTTCCTTGGCAACGCTGGAGTCTGGGTAGCCGGCCTGAGGCCAGTGGTATGAAAAACTGGGCTGCCCATTTCTTTGGCAACCTTGTGAGTGTCA

a score=53923
s chr3           105154546 3696 + 160039680 GGGTTCCTTGCACTTTTTCATTGCAATATGCCAATGAGTGAGAGAAGAGGAGAGAAGACTCACGGTGAGTAGGGTTTAGAGTAGTGGCAAGCACAGCCTTTCAGGATG--------------GAGAAATGGCAGCAGCAGTGTGCCTACTTGGCACG--GTAGAGGCTAAAAGGTGTTGGATGATAGTGCA-AACACAGTAGTGAAGTCAAGA--------------------TGGGAGATGCCAACTGATGCTCAGGGCTTGACCTGC-------------AGACAAGGGTGTGATAA--GTTTG--CAGGACCTGGG-----GGGATGCAGGCAGGGGAGTTTGGGTGG--GTGAAAGACACAGAAAGAGACACTAAGGTT-TGGAGGTGGCATGGAGTCTTCCCTGAAGGCATGGCAGTGTCTACCCCTGTATATACTATGCCTATCAGATGGTGTTCTTAGGGACACAGAGGTAATGATGGTAGAAATGCTACCAT----------AGGATAGCTTTGAGTCTAGGTCTGCAAATTTTGCAATTTCCAGACCCCATGAAAGGACAAGCCTGGCAACCTCTCCAATTGCTTGTTCCTTTTCCTCCTTCCTTCTCTTATGCttatttttaaattgagataggctcttgctttgctgcactggaagatggcctggagttcactgtattgcaagggctggatatgaactcttgatctttctgctcccgcctctcagatgcaggaatcacaggcaCCAGGACTGTCAAGGTCCCCTATTTCTTCAGTGGTCAGCTGGAACATTACCACCCCAATACTCGG----------------CTTCAGTTCTACATTTTCATGCCACCCTCTGTTTCTCCCATGTGGCACTTGCCATAGTAGTAGTTGGTTGATTAATACCTGACTTGGCTATGAATCACCAAGTTCCATG-GATCAGAAGTTGC-TCTATGATGTTCAGGGTTAAAACTCCAACAAG----GAGCATGGAACTGGGACTAATTATCAGGAAATATGTACTTAATGACTGAATGGATCTTGGAGTGGATAtgattaattaattattattaatcaattattaattattaattCGCATGGCAGGTAGGAAGATATAAGGTCATCTCAAAAGATCTTTATAAAGCTATTGA-AAATAGGATCAATCAGTGTTGCTGGGACAGGAATAAAGAcagcagttcttaatcttcttaatactgtgactctttaatgcagtttctcatgttgtgctgaccccctaaccataacattctttttgttgctacttcataactgtaattttgctactgttatgaatcacaatgtaaatattttttggagataaagggttggtagaggggttgtgacccacaggttgagaactgctgATTTAGAGTTTACTAGCGGTAAGAACAAGTTTGGTGTCAATCACGCAGAGTGACGGGA----------GGGTGGAGGATGGTTGAGTGTTTGGAAGAATGGCACAACAGCATGCCTGCTATCCATTCAGAGAACAGAGGA-----GAGGAAAAA----TTAGAAAGGCTCCCAGACGAGAGGAC---GGAAGGACAG-------AAGGGTGGACGAGAACAGCAATTTCCTGAGGGGAGTGTTGAGACTCATAGAGCCCTCTCTC-------------------------------TTCCCACCCTCCTTTG-----CAGCCT-AGTTTTACTGCTTCTTCTCTTAGACCTTCTCTGTCCTCTGTTTAGGGATTCCTTTGTGTCTTCTTTACCTGGCGGAGCCTTTGGTGTTTCCTATCTCGGATTCCACCCTTTACCCTC-ATTCTGATCTC--TTTTTTTCTGTCCTTTCCCCCACCCTTAGATTGTCCAAGCCCCCTCTCTCCATCTCTACTTGGTACCATTGCCCTTTGGGGTTTATC-----ATACCTCTCTATTCCCCCCCCCCTGCTCATTCTGTT--TTGCAGGCTGGATATTTTTTAAGATCTTCCAGATAGATTGATACCAACACTGACAAATTCTTTTGGCCTTTCTTCTCTTAGCCTCTTAGTCCATTTATATATGC---CAGCACTTCTTTCTTCCCATAATTCCCCTTCCCACAAATTCCCCTTCCAAGTCTAAGCATATATGCTTTGATCATAGAAACTGGACTAGGTACTGGACTGGCTTTTTCAGTTTCTTTTATGTTTCTTTCCTTGCATTTTCTTGGCCAGGTTGAGCAGAGCTGGAGTTTTTCCCCAACTGGGACCCATTCTCTCCACCTTGACCTCTCAGGCCCTTAGCT-------TATCTGCAGGGTCTATTCTGG-CTTCCCGCTCTCACTTCTTACCTGATAATGAGGGAAATATCTCATTGTCTCTTCCTGTCTTAGTCTAACACCCTGTGCATTTGTCTTCACATCAGTGTGCCTGTCTAGAAGACTGTCAAGGGACTTGGATGTGGCTGATGTCACTCCCTTTCAGTCTAGCTGAGTGTTGTTATAGAAAAGTAGGCTCTTTATGAATA-CTCTTTGATGCTAATGTTTTCATGATGTTGCAGATGAAGAGATGATGATAAGTGAGATAAATCATGACA--GTTTCTGGACCA--------CATGAAATAGGTACTCAATAACCATTAGTA-----------TGGATGGTAATGTTAATTGCTTTCCAAGACTCTCCTTTTGACTGCCAAT-ATGGGAACTGACTCAAAGGGACTTCTGGAGGGAGGAAGCACAATGTGGTGGAGTTTAGTCCACTCCCAAAAGCAGAACGTGAACTTGGGCTTCTGTAGAGACAGGAGATAGGA---AGGAAGGTGTTTTAAGGACTGGGATAGCTGCTGTCC---CTGTGTGGTTTCA--TCTCTTTCCCCGttctttcttctttcttt----------ctttctttctttctttctttctttcttttcttttcttttcttttcttttcttttcttttcttttctttctttcctcctcctcttcctcctcctcctcctcctcctccttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcGTGTGTACTTCATTGGATTGGGGTGGAAATGGAGTGGAAGGCATCTTTCCTCACCTATCCTAAGAAAcacaactgctgccaccgccaccacggccaccaccaccatcaAAAACCAAAGACAAGTATAACTGATTAA-----------TTTTGTGTGATGTAAGAGGCTTCA-----GAAGACACAAAGACTGAGAAGAAACTG--TTTGTGCTTAGGTTCAATGAAGAAAAGGTGGCCAGGTGAAATGATATTGT------ACAAAAGGCATG------ATGTGACAGGCAGGTTGGGGACCAAGCAAGGGCTGGCTTT-----GGCAGCTTCTT-----------------AGG--CCTCTGGG----------TAAAGAGAGAA-GGAAAGAGT-GACTCTCTAGATTTTATCACCAATTTGAGGGAAAGGGAGTTCCAATCTCAACGATATACTT-AGGGGAGAGGGATGCTGATTTCTCTGATACACATTCAGGCACaaagagg--ggaaattgacagaatagtagaaactcagag---aggctttgcttctcaggctccttcagaagccttccaGACCCC----------------CACAGGGCTGTAAT-------TTTTGGGTGCCATTTCATGGGTTGCAACAGCACAACATGGCATC--CTACCCTGGTGTCAGCCATTATGTCTCTGAGCTTCTGGGGTGCCATCAACTTGACTTCCAGATCCCTGACTCTATATTAAGGAAGAAAGATGTGATCAGCCCTGCTGGTGCTCATTGTCCACTTTAGTCTATCAGCTTTGGAT--GGAAAAGTATCA-------------TAGGAGTG-CCTTCTCTGA-TGACGGAATTGAACCTTACAAGTGAGGTATGTATTCTGGACAGAGACTACTGAAAGAGCCTTTATAGTAAATGCAGAGGAAAA
s HiC_scaffold_1 115725202 3336 - 233722169 Ggattccttattcttttt-attataatacTTCAATAATTtaaagcagaggagaggagattCCAGGTAAGTAGGATTTAGATT---------TATAAACTTACAGGGCATGAAATCAGAACATAAGAAACAGCATGAGCAGGATGCTTATTTAGCACATAGTAAAGGCTCTAGAGTATTCAGTGA--ATGAATAACATGGTAATGAAGCCCAGAAGCCCCTTGTCCCGGGATAGTGGAGGTGGCCAACTAGTATATGGGGAAAGTACTGCCCAGCACTGGGGGAGCCAGGTGAATGAGGATGGCTTGGCCAGAAGGTGAGCCCTAGGGATCTAGGCAGGGGAATTTGGATTGCTATGACAGGCACAAAA---GCCACCGAGGCTCTGAAACAGGGCTGGAG----------AGTCATG--------CTTCCCTTTATGTTCCATGCCTAGGGAATGGCATATCCAAAGGCACAGAGGCGA-GGTGGCCAGAGCATTGCACTGAGACTGAAGAGAATGGTTCTGAGACCAGATCTGTAGATT---------CTAGATGCT------GAACAAGCCTGATAACCTCTTCAATCACCAGCTTCTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTCAGAGCTCAGCTGAGTCACTGCTAACCCGATACTCTGATTTGGTCAGTCAGGCCCTCTGTCCTACATCTTCATAGTGTCTTCTGCCTCT-----GTGGCACTTACAATAGTTGTAATTAGTTGGCTAGCATCTGACTTTGCTGTGCATCTGTCGACTCATTGAGGGCTGACCCTGTACCTATCATGTCCAGCACTGGGTCCCCACCCAGCACTGAGCACGGAACTGGGAAGAGTTCTCAAGAAGCATTTATTCAGTGATTGACTACATTTTCAAgtggatataa---------------------------aaatattaactcacagaacactTGGGAGAATCCAAGGTCTTCTTCTAAATTCTTTGTAAAGCTGTAGATAAATGGGAGTGATTCCTGTTATTGGGACTGGGATAAAGACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGAGACT-CTAGAGGTAGGAATGAACTGGGTGTTGGTTGCTCAGAGCCATGTGAAAGTGCAAAGGGGTCAAGAATGTCAGAGTGTTTGAAAAAATGACACAGCACAGTGCTCATCTATCAGGTACAGAATagagaaagatagagaaaaaaaacctttgaaaC-TTTGCAGCCTGGAAGATTTAGAAAGAAACGTATCTCCAAGGGCAATGGAGAGCAACCCTCTTTCTCACTGACTTTCTTGGCCTCCCTTTCCCCCTctccaaagaagaaatgatttgttcctttttgtcttttccagtcTTATTTATTATCCAGCCTTGGTTTCTCTGCTTTGCTTCCT-GACC--CTCTACattctgttttgagttctctttgtttctg-ttcACGGTTTTTAGTCCTTGGTTTTTCCTGGCTCTGACCCCACACTGCACCCTCCAGTCTggtctcccttttttcttctccttttgatCTCTTTGGCCTTCACTCAGTCTCC-ATCTCCCTCAGTACTCTGGGTGTTCGCCTTGTGTGTTTTATCTCTCCATCTTTTCTTGCTGATCCACTGTCGGTGACTCTGTTGCTAGAATCCTGGA-AGTTTTTGGTATCTGCCGGGTGGATCAGTATCAATACCGACAATTTCTTTTGGTTCTTCTT-----------TTGGCTCTTCCACATCTGCTCTCGGCA--TCAGCCTTCTCTCAGTTCTTCTTCTCCTGAATTCA------GAAACCAAACAGATAC-TTCTGATCAGTGAAGCTAGCCTCAGTACCAGACTCATTCTTTCAGCTTCTTTTATCTgcatttctgtatattttcttgTTCAAACTGAGCAAGCCTGAAGCTTCCGCTAGCCTGGGATGCAGCTCC--CACCCCAACCTAGCCTGCCCTCAGCTGTCCCCTTGTCTGCTGGGCCTGCTCTTGTCCTCCCTCTATC-TTTCCAACTTGCTAATGAGGCAAATATCTCTGTGTTTCTTCATGTCTAAATTTAACGCTCTGTACATTTGTCTTCACATCAGCCTGCCTGTCTAGAAAAC--CCAGGGAATGTGGACCTGGCTAGTATCACTCCTTTTCAGGCTAACTGAGTGTTATTC---AAAAGCAAGATCTTCATAAACATTTCTTTGATGTTAATG--TTCATGCTactgatgatga--agatgatgataaatgaaataaatcatggCAATGTTTctggaacagtgcctggcacaaaatAGGTATTCAATAACCATTAGTATATTCTTAATCTAAATGATAATGTTAATTGCTTGTCAAGACTCCTATTTTGATTGCAAATAATGGAAACTGACTCAGAGGAGCTTCAGGAGGAAGGAAACTCTGTGGAGTGGAGATGAGCCTGGACCCCAGGGCAGGACATAAAGTTTGGTTTCGTAAGATTCAAGAGCTAAGAGTCAGGAAGTCATCATGAAAA--GGGGCAGCTATTGTGCTGGCTGTGTAGTCTTAATATGTTTTCACCATTTATCCTCCTTTCCTTGGCaggcaaggttttttttttccattcttc----------------------------------------------------------------------------------------------------------------------------------------------------tatgtac-------------------------atggcaaAAAGTTGTACTCACC-------ATAAGAGTAATGGCAGATACTTCTATAACAAAAACCA-------agttaacaagagaaaagcataacATACTCACTTAACCAAGCTCTTACATGACACAAGAGGTTTCAGAAATGAAGGAGCAAAGACTCAGGGAAAATTACTTCTATGTTTAGGTTTGAT-----AAACATGGACA-ATGGAATAAAAATGTGATCTGACAAAAGGCTTGGATCTAATGTAACCAACAGA-AGGGAGCTCATCAAAATCTACCTTTCTATGAAGATCTCCTTCCTCCTGGATATGGGACAGGACCCTCTGGAATGAGAGCCTtcaagagagaagggagagaacagCCTTCCTAGGTTTTATGCCTGGCTTTCAGAAAGAGAAGTTCTAACTTTTATAGCCTACTTCAAAAAAGAGGAATCCTGGATTATCTGATCCACTTTGGGGGGAAAGAAGGCAGGGAAAAGA-AGAACAGGAGACATTCTGTTCTCAAGCTCTACTTCTCAGGCTGCTTCTGAGGTCTTCCAATCTCCTTTAGCTCAAAGTTCTCAGAAGACCAAAGTGCCATTCTTTGAGATCTTATTTTTTGAGCTCCAGCAGCCACATATGGCCACATCTGCTCTGTAATTA---ATCATCTCTCTAAGCCCC---AGTGGCACCAACCTGTGTTCCAATTCTTCCATAtcatatttacagaagaaaatgtgATCAGCTCTGCTGAGGCTAAGTGCTCACTTTGTTCTGTCAGCTTTGGATGAGGGATAGGATCACAGTCCACAAACGTAGGAGAGTTCCCCTCTGAGTGGCAGGAGTGATCCTTAAAAGTGTGGTGTGTAGTTTGGGGGGTGGCAGCAGAAGG------TAGGTCAGATACAAGAGAAAA

a score=111540
s chr3           105161780 6366 + 160039680 [encoded data, 7068 characters]
s HiC_scaffold_1 115729625 6247 - 233722169 [encoded data, 7068 characters]

a score=8961
s chr3           105168140 287 + 160039680 aagttgcctaaacctcagccttctcatctataaaatgggagtactaatagtatcAATACGATGCACATAATGCCGAAAGCAAGTACTAGGAA-ATTGATAATTACTGACA--GTTTTGTTTTCTAGAGGGAGAGGTACTTTGAACTTCTGAGGTTGCATAGTGAGAGTGGA-----GGAGGGTGTCATAAATGAGGGAATATTTAGGATAGACCTTAAAGATCCCGTAAGGTATTAACATTTGAAATGGGGGTGTCCATCCTAGCAGAGATGGGACCGTTTTGGAGGGAGTACAA
s HiC_scaffold_1 115748615 288 - 233722169 aaaTCACCTAATCTTTAggtttcttatctgtaaaatggagata---ataatattaatatgatACGTGTTAAATGTAAATCATGTAACAGTCATATCAATAAATGCTGGCTATGTTCTGTCTTTAAGAGAAAGAAGAGAT----ACTTTCCCATTTCCAGAGTGAGAATGGATTTGGGGAGGGTGTCATGAAGCAGGAGATAATTAAGTTGAAACTTAATATTCCTGTACAGTCTAAGCATTCAAAATGGTGGTGTGCATGATAGCAGAGATGTCTCCACCTTGGTGGGTGTACAA

a score=51145
s chr3           105169047 1407 + 160039680 TCTTAAacacacacacacacacacacacacacacacacacacacacacTG----------CCCTAGAATAATAGACATCACATTCATGCCATTGTTTTATTCTGTACTGCTTTGAATTGTTTATCCTTCTCTCTGCTGGGATTTGACAAATAGAAGACAAGTCTGGCAGATCTGTCGCTGGTGCCAGTTTGAAGCTGTGCCCTTTCAGGCATGCACTGGGCCCTTGCGTGACAGAATGACACTCCCTCAGCCAGCAGGGGTTACTCCTGGTTCTGGCTGCAGCTGGCTGACTTGTCTTCACATCCGCATGGGCTCTTTCTGGGAGCCATAGGAAATGCCAGCAAGGGCTGGTCTCTAGCAGCCTGATGGGCAGCACAATTTATTGTATGTCGAAATGACACCAGAC-ACAGTGCCTCTTGCAAGAGACAATTTGGTTCCTGTAATTGCTAGCCTAGGGGCAGG----AAAGAtctctctctctctctttctctctctccctctcCTTCATAG------GGATGGTAGAAACAGGCTCCCTGAGAAAAA---CCTCGTAGGCTCCAC---TCCTGTCCA-CTGCCCTAGGGCCTCTCAGTCCACCATCTTCACAGTGGCTCTTCTGAGCCAGACATAAGATAGAGGTGAAGTATTCACAAGACTGCAGCATTAGCCAGACAGAAAGTAGAATTTTGCCCAGAGGTTTCTATCTCATTTGGATCTAGTGAGAGTTTAGAAGTATCTGCTCATTGATTCAG---AGCCAGTTGCAAACCTAATAAATCATTAATGATAA--------TTttttcctgtagtgctggggatcgaact--gggcaagcaaggcaagtgctttacctctaagcaagctacagcctcagTGTCCATTATCTGTAACTCTTAACTGTCCATTCTCCAGATATGAAAAGCAGAGGAATAGATTGCTTCAGATCAGGCAAAAAGAAACTTAGTGG-GACCTAGTGTAGTCCACCGTTTTCAAGAGGAAGCTTTCCCCTTCCCCTCTTCCTGGTATTTTGCATATTTGTCCAAGCTGCTTAGATTAATACAGACTTTGGCACTCCAATTAGTCCTAATTTATTGACTG-------------ACTGGTTGTATTCTGAGATGAATAATAATTTGCACCAGGTAATTAATTTCTATTATTTTCCCATGAGAAAGGAGGGGAGAAGATTAGTGTGTATGTCTTCATTTATTCatgtatttattcaacaaatatttactgtgtgcttcctatgttttaggcgttgcattatgggctggggaatagaatgtccaaaaAG------------CCTCAAAGAGCTATAGCTTTGTTATAAGTAA---TTAACACACTGACA--CGGGGAAGGATACAGGTGAGCACATGGCACATCTCAACAGGGA------------AAGAACCTGGTGCTCGGGAGCCCAATCTCAATGAAGGGTTCAGGAGATGGTGGCTAGGGAA
s HiC_scaffold_1 115749226 1414 - 233722169 tttcacacacacacacacacacacacacacacacacacacacacatactgggGTATGGACATGTAGAATAACAGACTGCAAATTTATGGCATGGTTCC--CCTGAATTCCTCTGAACTGTTTGTGCTGTTCTCTACTAGGACTTGACAAATAGGAGACAATGCTAACAGAGGTGTTCCTGGTGCCTGGTTGAAGCTGTGCATTTTCAGGTGTGCCCTGGGTCCTTGCATGACAGAATGATGCTCTTTCAGCCTG-AAGGGTTACTCCCAGGGCTGGCTGCAGCTGGCTGACTTGTCTGTGCATCTGAGTAGTCTCTTTCT-GGAGCCACAGGAGGTGCCAGCAAGAGCTGTCCTCCAGCAAAGTGATGGGCAGTGCAATTTACTGTATGCTGAAATGACACCAAGTGACAATGCTTCTTGCAGGAGACAATTTGGT--CTATAATTGCTAGCCTGCAGGCAGGGGGAGAGGACCTCCCTTAATTTAATAC-------------CTACCAGAGTAGCCAGGATGACAGCAACAGGCTCTTCCAGCAAAAGAGTCTCAGAGA-TCCACTGTTCCTGTTCACCTGGCCTGGCATCCCTTGATCTATGATCTTC---------------------------TGCAGAGATGAAGTGATTAGGGACCCAAAGCATGAGCCAGCCTGGATGTGTAATTTTGCCCAAAGGTTTGTACCTCATTTGGGTCTAGCATTGTTCTAAA---TTCTAC-CATTGATTCAGGAAACCCTGTTG-AAACCCAATCCATCACTAGTGGtaattgtctcttttttctctattgtGTCAAGGATTGATCCtaaggcatgctaggcaagtactttaccact----aagctacaatGTTTGCCTACATTAATAGTAATTCTTAAATGTCCATTTTTAAGATACAGAAAATGGAGGCATAGGTTACTCTAGACCAGGCAAAAAGGAACTTAATAGTTATATATTAAAGGTAATGTTTTTCATGAGGAAA-TAGTTCCTTCCCCCCTTGCCTATAATTTGCATCTTTGTCCCAGGTGCATAGCCTAAAACAGTTTTTGGCACATCAATTAGTACTAATTTATTGACTGTATTGTATTCTGAGGTGATTGTATTCTGAGGTGAATAATAATTTG-GGAAGGtaattaatttctattattttactgTGAGAA------GAAAGAGATTA--GTATatgtcttcattcattcatttattcattcaaaaaacaTTTATCCAGTACTTTCTGTGTTCTAGGCCCTGTGTGGTGTAC------ATAGATGATCAAACAAACTATAGGTCCTCCCTCAAGAAGTTGCAACCTTG-TGTAGGCAAAGCTTACCACATTCCCAGTGGGGAAAGGATAGTACTCAGCATGTTGC----CATAACAGAAGTATTGGTGCAATAGGGTTGCATTGCAGGGGTACTTAATCCAGAAAAAGAGTGCAGGAGATGATGATAAGAGAA

a score=34254
s chr3           105170966 1322 + 160039680 GAGCCAACTCCAGCCAGCTCAAGGTGAAATGTAT-----TGTCATTAAACAAAAGGGAAACCT----------------------------ATTAGTAGATCACTTTGGGTTTTTATCTCCAGGACACTGGATTCCAGGAGCTGCAACTGCCTGCTGCTCTCTGTGTGACTGTGTTCATGCCTTC---CTTCTAGATTCAAGAGTCTGATGAACTCAATCTGGGTCCAAGCTTTTGGTGCAATCAGGTGAAGGTAGGAAGCAAGCATGGGGATGGCCAA---------TGAAAAATCCC-ATGACTCCCGTGATCAACCTTCCTCTCGCCCCACCTAGCCTTTTCATCATGTTGTTTTACAGAGGAGTCTAGGGAGAAAGGGAGGGAGGAGACAGAGGGCTCTTCACTGAAAGAAGGTGCAGAAGCATCAAAAAAGCTTTCCTAATGTCTCCACTGAGTGACAGTGGGTCTGACTGCAGCCTGG----------CAAGACACATTGGTTTCTTTTTTTT----CCAGGCCCATCATCCCCGTGAATGGGTCTCCCGCAACCCACTATCCGCACTGTTGAATTTCAGCATAGCCTCTGACATGTCTGTTAAACTCCAGAGATTGCAGAGGCCTGAGAACTTTCCAGATCTGTGACTTGAAGTGGCTGGAGTGGGCGAAGGAAGAGGAGGGGGACAGGC----CAGTGGAGAAACCCTCCAGACATC-AGGGTAAAGAGAAATGTGCTACTTTCCCAAGTCTAATTTGGGTTTATCCAAGTGAGTAATTTCCTCCAGCAGCCATGAGAAGCCCCTAACCCCCTGAGACCAAGGCTGATCAGAATTTTAACTGCAGTTCTGACAGCTTCAAATTGGAATCAGGCTGAGCCTCGGAGCCTTTGGGGTC-CTTGCCTTGCCTCCCTTAATTCTCCGGGCCCAGAACAGAATTCCCAGGGGCTGGCAGAATGGCTCTGCCGAGTCCTCTGATACCTGG-CAGGGA-TAGATGCGTCTTTACCTACTCCCCCTTTCCTAGTTTTTCATCTGATAATTGGCTTGATATGCCTGGGCTGGCAAGCATGAAGGCACCTAACCCCCAGCAGACACCTTTACTCACTCCCTTTGGGTAAGGCATCCTCCAGTCCTTTCCTTATCCCCTGGGA-------TGGCCAGTTAAATGCAGAATCTCTCTC-TCTTCTTACAGGcacaga---------aaatgaaagtgtaaggcatttcagatacctgtaagttgttcctttcattctatggtagaggcag--gtgcacagagaggatgaggcttgtcaaagctaatcag-ttgttggtgacagagttggctttgtacccaagagctctggcagcccagccaaggcgtcactcatgctgcctctcacaccactac
s HiC_scaffold_1 115754324 1334 - 233722169 GAATTAACTCCAGCCAGCTCAAGGTGAAGGCCATCAATTTTTCACATAATTAAAGGGAAATCTGATAAGCCAGAGCAGCTCCAGGGTCATCACTGGTAGGTCATTCTAGATCTTC-TCTCCAGGATAATGCATGCCATGACCTCCAACTGTCTGGT---CCCTAAGTGACTATGTTCAAGTCTCTAGTTTCCTAAGATGAAGAACCTGATTGGCTCAGATTGGGTCCTA-TGCTTGGACCAGTCAGGCACAGAAAGGGAACAGGAGGATAggtggacaaaaaaaaaaatgagaaatcccTGAGAATCCTAGAATCAGCCTCTCCTCAACcc---------------------tctttttttgaggcagttaGGGAGA---------------------GtttttcacaaaaaataaaggTAGG-GTGTCAGAGA---TTTCCTAGAGTCTTCACTGAGTCCTTCGAGGTCTGTGAGAAACCTGGTTTTTATTTGCAAGGcctatgagtttttttttttttttcctgtgccagTCATACCTGTGAGTGGATCTC--ACAACAAGCTCTT-GTACCACTGGATTTCAAT---GTCTCTGACA---------AACT--GGAGATGGAAAGGACTTAAGAATTTTACAGGGCAATGACTTGGGGATggtggag-gagagaggaagatagATGTGGAAAGGTGGGACAGCAGAGAAGTTCTTTAGACTTTTGGGGCAAAGAGGAATATGCTACTTTCTCAAGTTTAATTTGGGTTTATCCAAGTGAGTGATATTCTCAGGCAGCCAGGAGGAGCCATCAGCCCCTTGAGACCAAGGCCACTCAGAATTCAAGCTACCATTTTGACAACTTCAAATTGGAAATGAGCAGAGTTTTGGAGCTGATGAAGCCTTTTACATCTTTTCTCTCACTTTT--GGGCCCAGGGCAGAATTCCCAGGTGAAGAAAACATCGCTCTGCCAAATCTTTGCAGACCTATCCAGGGACCAGATAGATCTTTAACCACTTGCCCACATTTACTTGCTCACCTGGCAAATGACTTGGTACGCC-AGCCAGGCGAGT---AAAGAATCTGCCTCTGAACAGGAATCATTGCCCAATTCCTTTGGGTATAATCTCTTCCATCCTCCTCCTTAT-TCATGTGAGTGCTCTTGACCAGTTGGGTGGGCAATTACTCTCAGCCTCTTAGAATCCCAGACTGGGAGACAACCAAATCTTGGAGGCACTTCAGATAGCTTTTCATCTGTCCTttaattttacagaaaagaaagatgtgCCCAGAAATGTTGAGATGTGACAAGTTTAATCAGCTTGTTTGTGAGAGAACTGACACCACAATCGGGAGTTCTAAAAACCCAGTTAAGCTATCACTTACATTGTCTCTCATACTTCTGC

a score=15344
s chr3           105179310 839 + 160039680 aTGCCCTCAAGTTAGATCATGGCAGGGTTTTTA-TCAAGGTGTTCTAGCTGAAT---ACTGAGAGGAGGGACTGAC---------AAGAGACACCAGAATCAATACAGCTTAGAAGTTCAGAGTTCTGTGAGTCTCCGATTTGTCCCATAAATCAGG--TTCAATTTTTAGCTCTACCACTTGGCTAGTCAATGCCCCAATTTTCACCTATGCAATAGCGTGAGGCTGAAAACTAAA--GATCTTATAAATCAGCCATCTTCAAGAACAAACCTT----TGATCTGTGTCTATTTCAGC------------AGGTAAAAAGTATTCTTCGAATACACAGAAAAACAAATCCTTATTTTCTATTTGGGGCCTGGAG----TTGCAAATGGTG-TTACCATTCCTAAGTAAAAGTAAAGATTCCTTTAGTGCTATCAGAAGCAAACACTTTCTCATTAAGGCCTTGATCTCTTGATTTTT-----ATATTGTTTTTTGTTGGCAAGTGATTCATCCTGTAAGCCTTGCCTTTTGTAGGTGATTCAAGCTCAAGGTGTCCACAGGTAGGACCG---AGGTGCTTTGCCACCACTTATGT---CCTTGGTAGAGTC-TGTTTCTCACGCCTC-----ACTGAATTTTCACTCCGTTATACCCCAAACTTTACAGATTAATTACCACAGATTCCTAGCAATTTCTGGAGTGCCTATTTCTGCC----TAATACTTAGTTCTACTTTAGGAAGTAGCAAAGATTTTATTTTTTATTTTTTGATAAACAAGCCACATAAAGAGACTATGGGTAAGTTAGGAGTAAGTTAGGTTGATTAAAAAGATAAAAGATGCTGGATAATTATTTCACTGAATCAAGAATTT-CAATCAGG-------TAAAAATCTTtcc
s HiC_scaffold_1 115764524 829 - 233722169 ATGTCCTCAGGTTAGAACACTGTAGGCTCTTTAAGCAAGGTAGGATAGATGGATCAGATGGTAAGGAGAGACTGACTTGGCTGACAAGACAGATAGGAATCAATA-AGTTTAGAAATTCAGGGCTCT----------------TTCCATAAATCTTGATTGCAATGCTTAGATCTACCTCTTTCCTAATCAATGTTCTAATTTCCACCTAAGCGGCAGTGTAGGGCTGCAAATCAAACTAACCTTAGAATTTACCTTTCTGCAGGATCAAATTTTGCGatgattttgctttattttcgCATTGTGACTGTAATACAAAAGAGATTCTTCTAGTACAcaga-----aaattcttatttttcattttgtgcctttaaaatttaagaatttgtgtttttcattcttaACTTAAAAAA---------TCAACACTATTAGAAATAAGTAATTTATCCTAAAGACCTTGACTTTGtcgtgtttttaaaaaattactccaTGGTGGCAATTGGTTCGTGCCCTAAACCTCATATTCAACAGGCATTCC--TTCCCAGGTGACCAcaggtaaaaatgtaaaaatgcaatGGTTTGCTTTATGTGTGTTTGGGCAGAGTTATCTCTCTTATAATTATTGTGGCTCAATTTTTACTGCGTT-CAGCCAAATTATGCCAAATAAGTCATCCCAGA-----------TTCTGGAGGGCCTATTCCTGCCCAAACAACTCTTGATACAATTTTTGGCATCAGTCA------TGGTTTTTATTT--------ATAAGCAACAAAACAAGactatggagaa-----aaataaa--agactgttTAAAAGAATA-----------TTAGGTAGCTCACTGAATGAGGATTTTACAGCCAGGAACAATATCCAAATCTTCCC

a score=14596
s chr3           105180809 565 + 160039680 ATCCCCAACAAAGGTAGACCCGAGGTGCAGAGTA-CCAAAGCAAATGAGAGGTATCCACTAGTccttggacaagtcactgctttttctgtttctgcc--tttcctcgtctgtggagagaa-ggtttggagtagatg-------ttgctcccatgcctg--ccgaggctgaccctcttctgtggattctGGCATTAGTGG--TTCTGGTCCCCTGTTTCAGCTA--AGAGGTGATGATGAGCCCGTGGACTGCTCCTAGGCATATGGCAGAAGAGGTAGGGGACAGGATAGATGGAGGCGGCTCTTCCGAGCTTTTGTTAGCTGTTGGATTGAAAACTGGTGCAGCTGtttttttttttttttt-----------------ttttttttttttcttCAGCAGCTTCACACTGATGTAGAAAATAGAAGCCGCACCAGGCCACTGCTGTGAAAGATCCTGAGAACAAAGTCATTTCTCAAGACACTGCCCTGTTTGAACACTGGGTGACAAGGTGACAGATTTTGTAGACACTTTGTGGGAGAAAATCCACCACCTTGAGTGATTTTGAAACCTTTAGAAATGTTTGGCAAGTGTGAACAG
s HiC_scaffold_1 115765525 537 - 233722169 ATCTGAAACAATAGAAAAGCTGAGTTGCTAAATAGCTAAAGCAATTGGCAATTGTTCCTTAGTC-TAGGGCAAGTCCctctcttctctgtttttctcagtgttttcatCTGTAGAAGGAAAGGCTTGGACCAGGCAATCAAACCTGCTCTCAGACTTGTGCTGAGGCTGTCACTCCCCCTTGCCTCTATGGAGTAAAGAAATTCTTGAGCACTGGGCCAGAAACCAGAGGCCAGAGAGGG---------TGGCCCAGGGCTCACAGCCTCAGGGG---------------ATGAAGGCCACTTTTTCTGGGTGCTTACAGCTATTGTGCTGAGAACAGCAACAGCTGTTTTTGTAGCAGTTTTCACACCCCACGCcgaccttttatttttttgtt----------------------aaaa---------cGCCCGGCC------GTGAGTGATCCAGAAAAGAAAGTCGTTTCTTAAGACACTACCCTGTTCGAACACTGAGCGTCAAGGTGTCAGATTTTGTAGacattttatgggaaaaaatCTGCCACCTTGAGTGATTTTGAAACCTTTAGAAATATTTGGCAAGTGTGAACAG

a score=41603
s chr3           105188936 1376 + 160039680 TTATCTGAATGTTGTTAGGCCTGTATGAATTTGAACAAGATGGAGGTTGTGCTGTTGGCTAGGATGAGAACA-----------TCAGCAGTTGATAGAGGAAGGGCATGGAGGAGCAGCAGCTGAACAGGCTTTGAGTGGCATCTGGG--CTTGGACTCAGTAAAGAAATACACCTGCTTTGAGCTTTT-AGGTTCAGCAGAA----------------TGTAGTTCATCTTGTCCATCTGTCTCTCCCTGCTCAATCCTGCCT-----CTGGCCC--TATCTTAGTTTCCAGTTCTTTGT-----TTGTTTACTGTTTCTAGTCCCTGGCAGCAGCCTTTATGCTTATAAAAGGATTCCTGCAATTCTCTTAGTAA-CTGCTGATGGGTTTCCAGCTCT----GAACTCCAATCATACACCTCTGAGGTCCGTGTTTGCTTAGCCTCTCTCCTGGCCCTGATGATGACAGAGTCTGTGCTGTTGTTTTGCTCTGGCCTGGATACTAAGAGCAGTGACAGATGCTGA-AGGGATGGAAGGATGCCTTCCTGGTCCATGATGGCACTTGGGAGATGTGCTTACTCCGTGGCTGCTTCTGTGGACAAAGAGCCTTTCTTACTCCCTTGAAATCTACCAGCTCTGAAATTTATGATGAATTCCCTGTCCC-ACTCCCGGAGGTAGCTGCCAAGAAGACAGGTTAAAAGCCTGTATTTATGGCAAGTGACAACAGTCTGAACAAGATGTTGTTTAAGGA-CATGGTGAGTTCTCACTGTTTCACAGACTCCAGGGGCTGAACAGTGAGTGTGAAGACCAAGCCTGTGGGTGAGGGTACCCCATGACCCACCTAAGCCAGAGGCTCTCAGAGGCAGCGGGGGC---CTGGAGACCTGATAGGGCTCTGCTGATGCTGGACCACACTGGAGGATAGTTAAATATTTAAGAATGGTACAAGCTGGTTGTTTAACAG-Cggtggcttgaaattggccatattgggtagttttatgccatgaaaactggaaaacattgtaactcag-----gttatctacttcaccctggaga-----------------------AAACTGCCTCACTTTG--TGCTCTCACAGGGGTGGGAGTGGGGGTGGGGGAAAGGTCTgagagagagagagagagagagagagagagagagagagagCTGACT---GAAGCTTGG--GGCTTTGCTCAGGGATCTGGTTTGGATAGAGAGGTTGGTGAACTGGCTGTGGAGAATTGCTTCCCTGGAA---------------GGTGAGAAGGCTGGTTTAGGAGAGGAACAGAAAAATAAAAGTAACTAGATCTTCATTCTGTCAAGCAAGCAAGGCCTGGCTGTGGCCAAGCTTCTCTTCTGGTCCATGGGTCTGCAATAG-AAAGCAGAA--GCTTAGTTTACCGTGAAAAACTTCA------TGTATTTTTCACAACAAATTCCTCTCCTGGTTATCTT
s HiC_scaffold_1 115771892 1392 - 233722169 TCATCTACCTGCTTTTGTGAGGGCCTGAGTTCGAACAAAATG------------TcaggtagaatggaaaaaaaaaaaaaaactaagccaTGAATTGATGCAGGGCATGGAGGAATAGTGGATAAATGGACTTTGAATGACACCCAGGAGCTTGGAACCAATAAAGATGTCCAT----TTTGGGCTTTTCAGATTTAGCAGAAACAGGTTCAGTACCATCTTTATTCActttccctgtctttctcctcct--ttgtTTCTGTCTGGGATCTTGCTCAGTATCTGGTTTcctatttctttgtcttgtttgcTTCCTCTCTTCAGCCTTTGGAAGCAGCTTTTATGTTTACAGAATGGTTCCTATAATTCTGTTAAAAAACTGCTGATGGGTTTCTAACCCATGGAGATCTCTAACCCCACACCTCTAAGGTCAGTATACCTTTAGCTTGCCTTCTGCAATGTATAGAAACAGAATTTGGGATGTGTTTTC-------TCTGGACACCTAAGACAGGTGAAGATATTGAGAAGTCTGGAGAGTTGTCTTCCACTTccggggaggagtttgggagacATGCTCACTCTG---CAGTTCCTGTGGACTAATAGCCTCCCTTACTCCCTTGAAATCTACCAGCTCTGAAATTTATGATGAATTCCTTGTCCCTGCTCCCAGAGGTAGCTGGCAAGGAGACAGGTTAAAAACCCATATTTATGGCAAGTGAC-ACTTTCTGAACAAGATGTTGATTAAGGAGCATGTGGGGATCTGACTGTTCCACatactccagaggctgagccGCAGGTACGAATACCATG--TGGGGGTGAGGG-ACCCTACCGTCCGCTGAGGCCTGGAGCCCTCAGAGGTAGTGGAGGAGGGTAGGGGACCTCACAGGGCTGTGCTGAAGTTGGCGCACAATGGCAAATTGTTAAATGTTCAGGAGTATTATAAGCTGATTGTTAAACAGTTGGTGACTTGAAATTGGCCATAGTGGCTGTTTTTATACCATAACAATGGAAAAACACTGTAACTCAGGGTTTGTTACTTACTC--CTCTGGAGAACTGGTTTTCTGGCACTCCACAGAGCCAGCCTCACTTTGGATACTTT-------------------GTAGGGGCAATGGC--------------------------------------AGCTGTCCCAGGGATCCTGAATGCTTTTGTCCAGGGATCAGG-CTGCTCAGAGGGGTTCCTGTCCTGCTTGTGGAGAATTGCTTATCTGACCTCTGGCTGCTCATCTGGTGGGAATGTTGATATTACAAAGGAGTAG-AAAGTAAGTGAAAATAAACCTTCATTTTGT----CAAGAGAAGCTTCACTGTGGCCAAACTTCTTGGCTGGTCCAGAGACCCAGGTCAGTGATGCATAATGACTCGGTTTACAGTGAAAATTTTAGATCAGTTATATTTGTTAGTCAACATAGCTGTCCTGGTTATCTT

a score=39360
s chr3           105191388 1245 + 160039680 GAAGGAAGCCTTAGAAAGTCAGTCTAGAAGACAGACACCCAGAATTACTACT---CTAACTGCCGAGG-CAGACCCAAGGCGAACAATGTAGCTGCCATTAACCGCAGTGAGTGGCTCAGGTGACAGATGTTGGCAACACCAGGG---CTGCCAGTTGCCTGCTGA-ACCAGGATGGATGTGGTGCAAT-TATTCTCTGTA-----TTTATTTGTATGAAATTAGATTTGACTGGGGAATGTCCTCTCCCTCTTCTGAATTATTAACGTCCAATAAAAGGTTATAGCTAAATTCCTAGACAACCTCACGTGTGGAAATAAAACCATCATTTCTGTTTTAACACAGCTGCTATGCATTTCCCTCTTATTATTGAGGAATACAAGAGAGAGGGAAAAGAATGGTGATTTTCTTCAGTTCTCAGGGGCTCAGGGTTCTCTCTGGCAGTTGGCCTCCCTCCTTGGAGGAGGTGTTTTTCTCAGTTGTGGGGTGGGTCTCCTCATCTTCAGCCCTTCGCCATCAACAAATGCAGCTTCCTGGTTCTTTCTAATCACCTTACCCTCAGCTGTGGGTCCCTTTCCTGGCAGAGCTCTGGCTGTGGGTAGATTATGAGGGAGGGGACTTGTGACATTGATGGGCTTGTGGTTTGAAGGCAGTGCGTCAATCAGCTTGTCTGTCAGTCGGTCAACAAGTCTTTATTTATCTCAGTGGGTGCAGAGCAGCCCATTGGGCAGTCGGGACACGtggtctctctgcctgcagtcttttcccctcacaccatcctacacacaactgtcacattaactctttctcagataca-----gatcctgttgaacttcggctcaaactcgtttggtggctgactccccattccctccagGA-AATGCA-----------------TGCTTTGCCTAGTGTCTGTGTGTGTGCAGCATTCTGGCCCATATTTA-AGCTTTTGTCCTTCGTGCTCTTAAGCCCCTTCATGGCCTTAGTAGGACTGCTTACTGTCTCTTTAACACACCGTGTAACTTCCTACCCTTG-----------------TCTTGCTTTTAGCTGAGGTCTATGTG--CAGTTCCTGCAGATCCTGCCAG--------ACTGCATGAAAGGTTGTGAACCATTCTGGTCACCCCAGCCAGAAAACACTGACGATGCGGATGGTAGCTCCTTGTGC----------------CAGAGT------------------TTTCTGAGGCAGGTGGgcatggtggcagggagcagtggttctaaagtcagactcagattttaaatcccagagatgccatttGGGAGGTAAATGTCCTCTCTGAGTCTC
s HiC_scaffold_1 115773762 1274 - 233722169 GAGAGAAGCTTTGGAGAGTCAATATAGGAGACAGCCATCCAGAGCTACCACCATGCTAACTGCTGAGAACAGACCCAAGGAGAATAAAGTGATCATCACTAACTAGAGTGAATGGCCCAGCTGACGGATGCCAGCTATGTGTGGGGGTTTGATAATCCTCTGTTCATCCCAGGATGAATTGGATGCTTTCTTTTCCCTGcaaagtttttatttgtatgaGATTAGCTTTGACTGGGGAAtg-cttctctcttttctaaattaTTAACATCTAATAAAAGGTTATAGTCAACTTCCCTGACAACCTCAtatgtagaaataaaatgatcatat-----ttTACACAGTTGCCTTGCATTTTTCCCCt--catagaagaa------aaagaggaaaaagaattggAATTATGTTCAGTTGGCTAGGGCTA-----TTTCTCTTGTCATTGGCCTCTCTTCTCCAACT-TTTGTTTTCCTCA----TGGAGAGATAC----AGTTTTCAGTTCTCCACTTACGA----TGCAGCTGTCTGGCCCTTTTTAATCACACTAGCCTCAGCTCTGTGCCCACTTTCAGGCAGAGCTGCTATGGTGGGTAGATGATGAAGGAGGGGATTTTTGATGGAGATGGGTTTGTGGTTTGGAAGCAATATGTCAATCACCCTGTCTGTCAGTCAGTCAACAAGTctttatttatctcagtggct-----------------------gGGACACATGGGCTTCCTCCCTGTCGTCTCTCCCCCTCACACCATCTTACATGCAACTGTCACGTTAACTCTTTCTCAGGCACAATCCTGATCCCATTGAACCCTTGCTCAAA--CATTTTG----TAACTCTCCATCCCCTTCAGGAGGAGGCAAATCCTCACAGCACAGCTACAGTTCTGAGATTCTGAG-GTG-GCCTCACTCTGACCCATCTTCAGAGCTGCAACTCTTATCTCTGCAGAGCCACTTCATGACCCCCGTGGCACCACTTGCTGTCTTTTTAATACCTCTCACGACTCTCTACCTCTGTGCCTGtgctttctctctcccctttccgTCTCATTTTTGTCTGCACAGTTTCTTTTCATCCTCCCAGTCATGCTTGCTGTTCGCTCCTTTACGAAGC-CTCTGGTCACCCCAGGCAGAAAGCACTGCAGAAGT-----GTCACtccttgtgccttgtttcaagcGCATCAGATTTGCCTTGTCATTTAGCTATTTGTGAGGcaggaaaacacagatggaaagaACACAGGTTCTGATTTCAGGA-AAGAATTTGATTCCTACCTGCATTGCTTGCTAGTTATGTGATCTCTCTGAGTCTC

a score=36098
s chr3           105194981  996 + 160039680 TTTAACTTTAATTCTAGATATAAATATTACCTTCATCATTTTAAAGTGTCAGGTACCAAAATTCCTTGAGGTTCAAGGGCTTCCCCAGAGAGACCTTGCATAGTTGCCTGGAGACAGTATCTTCTGGCTTCAACCTCATCTTATTTTTTACTGTTGTCCTCAGTCCATGATTAAGAAGATCTGCCTTAGT---ACATGGTGGCATTTAGAG--CCTCAGG--GAAGATGTATGGACCCACACACTAGCTCCACATACTGTGGATCAGCCAGGGCCTGTGGTACCCTGAA--------CTACATTCTATAAGCCACATGCTCAGTTCTTACA-------------------GAGCAAAAGTGGGCAGCTGACTATGGTGAGCCATGTCTGGGCAATCTGCTGTTTAGCAGTCCCACAGAAACATCCGAGGGCAGATTGCTTTGTTTCTGCCTTCCAGGTGGcagtcatgtgtgtgaactccaagaattctaactctcttcactattagtctaatgaacattaattaggtaggcacatttgcagcagaaatccccaaacaaatcaatgatgtattgtctaatcatgcatgtcaaagccaaatagaaatgtttggagatcatttgcaagttttCTGTGATTTGATCCAGCGAGTTTCTCCACCTGCCTTGGAAATAGAACATGTGCTTTTCTAGACACTCCACCACCAACTCCTAAGTCACTTAGCCTCATTCTGTA----------------GGATGACCCTCAGCCCGTCACGGC----CATGCAGGTGTTGTTTGGGGATGCCGGTGCCAGCCCACACAT----TGTACCTCATGGTTTATGTCAGAGTGCTTGATGCAGCAGGCATCCCAGCACAGTACCAAGTGAGGCATGCAACCT-------TGAGAGTGATGGCAATTAATATGTCTGTGTCTCAAGCAAATTAAATGTTTCTAAATTATTCAAGCCTGGGCTCCTAGGGTTTTGGTGATCTGAGTTCTAGTTCAGGTCCCAGCATTCACTAGTTGTGTGTCTCGGTCTGTATTCTGAGGGGAGAC
s HiC_scaffold_1 115775351 1000 - 233722169 TCTCATTTTAACTCTTGTTG--AGTATTATTGCCTCCATCTTTAAGCATAAAACCCTAAAATTCACTGGGGCTCAAGG------------AGACTTAACATAGATGTGTTAGAACCAGGTCTtctgac---------attttctttattcctgcC--CCACTACTTATGCTTCGGTTGA-ATGGCTCAGTTTGCTATTCTAAGATTTTGGGGTCCTCAAGAGGAAGGACTCTGGAACCACAGAAGAGC---------------------AAGGCCTGCTGTGTCCTGAGAAATGGAGCCACATTCTACAGCTCATGACCTCAGATCTTACATACTTAAAGTGTGAGAATGAAGCAAAAATGGGCAGGGGACAATGGTGGGCTACGCATGGGCACTctgttcttttgtttgctttctgcaaTATT-GGGGCCAAGGTGCTTTGTTTCTACCTTCCAGGTGGCAGTCATGTGTG--AACTCCAAGGACACTAACTCTCTTCACTATTAGTCTAATGAACATTAATTAGGTAGGCATATTTGAAACAGAAATCCCTAAACAAATCAATGATGTATTGTCTAATTGTGCATGTCAAAGCCAAATAGAAATGTTTTAGGATTGTTTGCAA-TTTTGTGTGATCTGATCCATCGCTCTCCTCCACCTGGTTTGGAGACAGAACATCTGTTTTTCTAAATGGTCAACTTTCAACTCC-----CACCTGCATTCATTGTCTATCCAGGTGTTGATTTGGGATG-TCTGCATCCGGTACTTGCATCCTGTTCAGGTGTTGGTTTGGAACATCTG---AATCCTATGCATGTGGTCTTCATAATGGTTTAAGTCAGTGTGTTTGAGGCAGCAAGTAGCTCAGCACAGTGCCAAATGAAGTATGAAGCTTAAAGCTTTGATAGTGATGACAATTAGCATGCCCGTGTCTGgaacaaattaa-tttttctaaattattcagGCCCGGACTCCTAGGGCTTTGATGGTCTGGGTTCTAGTTCAGATCCCAGCACTCATTAGTTATGCATCTCTATCAGGGTCCTGGCAGGAAAC

a score=63229
s chr3           105196982 1202 + 160039680 ACTCTTCTGCTTAGCTGACCTTCTT-TTGGATCAATTTTACCAGGGGCAAGTGCAGGAAGATGTGGGCCCAAAGCAAAAAAATAAAATGTGGCAGGCGCCCAGGAAGGGGTGGAGG----GAAGGAGCCAG--CTTGCATGGCTGCTGTTTCCACACACAGAGAGAAATTACAAATTTGTTCTTGATTCATATTGAAGTAATCTTTTTCTCTTTGTTGCAGTTTATTCAGGTTTATGGAGCACATAAAGACCTACAAAGGCGGACTTTTGATGTAGTTATGCAGCTATAAACTTATACAGCTGTAATAATTGCATTTTAATGATTTCTTTATATTGCCATAATTGGTAGAGTTAATGATCATGTCAACTGGACGAGGAAAAAGAACACTCGTGGCAGCCAATCCCTCTCTC----TCTAAGACTCTCTGGAGGCGATGGAAAGATACATGTTTTCCAATTTCTCTTTATTCACAACTAATGGACCCCCAACGGGTAGTTCCTGAACTCCAGAAACTTTTCTTTGGACTGGCTTCCATCTGATACATACACTTAATTTGCC-TTGTGCCGTGAGCAA------ACCTCCTTCCCAAGGAGGAGCCAGACTGGAGCATCCTCTATTCCTCATCCTCTCGTTACTACAGTTTCACTGCACAGTAGTTTTCCATTTCAGGCTTCATTACTGAAGAAAGCACTGGGAAAGAAAAGGGTTTGGGGATGGCGTGTGCACGTGTGCCTGTTATTTAATCATGTCCCAAGTGCTGAGGAAAAAAAGTCCCTTCGAGATCAGAGCTGGATGAAAGATCTTGATTTTTAGCTGGAGGGGAAAGAGGGAGCTAAAAATCAGCTCCGCCTGAAAAATTCTCATAAAATTTGCAAAATCTCGAAACTGAAAGTTCTGCAGTGCAGAGGTA---CCGGGCGGTGTGAACAGGGTCGCTTAGGGCCTCTTTGGAACTGTGCTTAGATGGGGGCTGCTGTCAGTCAAGCTAATGGTAGGCTTGAGATGC--GGGTGGAGGGAACTGACCCTCAAAATAG-GATGGCTTTGGGCAAGACTAGAAAATAAATAATTGCTCTCCTCCTACCTTCCCCATCTGCTTCTGGCAAAGAGAGGAAACGGAAGCTGGTTAATTCCACCCCCAGACCCCAGACCCCCGCCTACACCCCTTGGTTTGACAGACAATTCTGACATTCTGGACAGCCCCCTAGGATATGTCAATT
s HiC_scaffold_1 115776926 1171 - 233722169 actcccctg-ttagctttcatttttgttgtgtCAGTTTGGGCAGAGACAGGTCATGGAAGATGTAGGCctagaacaaagaaaagaagtctACCAGGCACC---ACCAGGCTAGAGGTCACAAATGATCCAGGCTTTTCATTGTTACTGTCTACAGAGTAAGGCAGAAGTTTTGAATTTGCTCTTGATTCATATTGAAgtaatctttttctctttgctgcaaCTTATTCAGGTTTATGGAGCACATAAAGACCTACAAAGGCGTCCTTTTGATGTAGTTATGCAGCTATAAACTTATACAGCTGTAATAATTgcattttaatgatttctttataTTGCCATAATTG-TAGAGTTAATGATCACGTCAACCAGATGATAAAAACAATGCTTATTGGCAGCCAATCCCCTTCTCATTCCCTCAGACTCTCTGGAGAATCTGGAAAGATAAATGCTTCCTGACTCCCCTTTATCCACAGCTAGTGGACCCCCAACTGGTAGTCACTGCACTTCCCAGAGTTCTCCTTGGAAGGGCTTTCATTTGATACGTACACTTCATCTGCCCTTGTTTCAGGATAGACTTCTCACCTCTCTCC--AGAAGGAGTTGAGCTGCTGTGTG-TCTAGCTCTCTTTTTCTTGCAGCCACAGTTTCTCTGCACAGTAGTTTTCCATTTCAGGCTTCATTACTGAAGAAAGATCTGGGAAATAAAAGGATTCAGAGCTGGCGTGTGCACGTGTGCCTGTTATTTAATCATGTCCCAAGTGCTGAG--AAAAAAGTCCCTCTGAGATCAGAGCTGGATGAAAGATCTTGA-TATTAGCTGTGGGGGAAAGCGGGAGCT-AAAATCAGCT-TGCCTG-AAAACTCTCATAAAATTTGCAAAATCCTGAAACTGAAAGTTCTGCAGTGCAGAGGCATTTCCATGCAATGTAAACAGGGTCAGTTAGAGCCTC-TTGGAAATGTGCTGGGGTGGGGACCACTGTCAGTCAAGCTAATGTTGGTCTGGGGATGTGGGGGTGGAGGGGACTGACCCTCAAAATAGAAATCGCTTTCGGCaagattagaaaataaataatctcTTTCCTCCCACCTTTCCCATCTGCTTCTGGCAAACAGAGGGAAAGA----------------------------------------ACCCCTCTTCTCTTGATGTACAGTGCTGAAATTCTGGACAGCTCCTAGGGATctgtcaact

a score=81636
s chr3           105199905 4821 + 160039680 [encoded data, 5165 characters]
s HiC_scaffold_1 115780545 4479 - 233722169 [encoded data, 5165 characters]

a score=59012
s chr3           105208720 3566 + 160039680 [encoded data, 4106 characters]
s HiC_scaffold_1 115785281 3679 - 233722169 [encoded data, 4106 characters]

a score=82583
s chr3           105214452 2854 + 160039680 ccagatcatccatttacttgggtaacttaaggtcatttctt-------gaagactcatctcaccgtctttaaaatggacacaacattatactgccctcataaagctagcatgaggattcaaagtgaatcaacta------------gcacagtgcctggtttgtaatacagagctgtga---ttgttggtAT--------GGTTC-----------------------------------------AGTGTTA-GCAATTTCACTTTGACTTGGGCTGCTTTGGGATTTTCAGAGGCAGGGAGATGGATATCTAAG--CACTCTGAACTTTTGGGTCTGAATAGTTCGTTCTTTCAGTGCCTTCAAATCGGACTCTTTATTCTGGTGATTAGGCCTTTCCTCCT---ACTTCACCACCTCTCAGACCT-CATTTGAATGGGTGAAGGGTCTCTCCTCTCCCTTCATGCATGGCTCCTTCTCTCAGGAGCCGA-TCCCTGGAATCTGTACTTTCCTCTCAAGCCAACTGGACTGCTCTTCTGACTCAGAATATCTGCTGAG----TGGGGCAGCTGTTTTTCTTTCTCTGACCAAGCTGTTAATGGCCCATTTTCTGTGATTCATAATTACCTTATTCCATTATACAGGATCGTTCAGACTGGATGGTGATCCTGGTTGCTCAGCACACAGTAGCTGACA------TCTGCCCTGTTCAGTGAACCCT--GACCC--TTATCTATGTATCTTATC-------------------------------------------------------------TGTGGTGACAAGTACA--------------------------------------------------TTCTGGAATGTGTTTGCATTCACCGAGTGCCTCCCATGTGAC----------------------catgggttattgcatttg--ccccacagtggcctactgaccttgataactgatccttctcctaatagacagac-acaaaactgacgttgcgtgaggctaactgatccatcccaagctata-------ggtgactgatttgggacttgagtttgggagttc-ggttgtgaaacttgtgttcttaatccc------tTGGTAAGTGCATG--GAAAGTAGAAAAGTCCAACAGTTTT-CCTTCTTTCTTCCTTCTC------CTGGAGAGCATTTTTTTTTAATCTACCAATACCATACAGACAGCTCATGCATTGCAGTGCAAGGTGCTCAAACCTTGGTTGTTTTGCAATAAACAGAAGGTTATAGATCCCCCTAGCTCTCCAGATATACCCTGGAGACAATTAAATACAGAAAACAGAAAATGTTGAGGGGAAAATAATCCtgcattatgaaaccaaatagaaatcgctttgaagtatctgttgtttttggattatccatgagtgtggataatcagaggagttggctgTGTTATTACGCACACAACTTAATCTGCATCCTCCAA-CAACGTCTGCAGTACAATTTTGGACAACAAATTAGTTTCAGGCGAGAGACTCTTGCTCCTCCTTGAAAAACATTCTTCATTTCAAATTATCCTCATTGCCAGCCATCAGCGCTGACAAGAAGGCAGAGAATTAAACTGTTGATAC-AATCCTGGCCCCAGGCTGCCTCCCGCCTGCTCATCACAGATTCTCTTTGTGTCTTCCCCTTCAGGGGATGTCCTGAGCAGGGAGGAGGAGCGGGGC-AGCATTATGGC-GGCTTCAAAGCTTTGCCCAAGCTTTCTTTTCATCCTCCTGGAGGCGGGTGCT-CTTTGAGAAGCCTTTGGATGATTCTGGAAAAGGGGCCAGCTCAGAGGAGCCTCGGAGCAACTGGGTAAAAGACCAGAAGCTTCTGC-CAGGGAAGAACATCCTGTCAGGAGACCACCCCAGATGGGAAGGACCACATGC-----CCCCTTGACCCCTGGTCCCTGGCAGCCATTGTGGAGTAAAGATGTTTCTCTAGAGAACCACCAAGGCAAAGATGTAGCAGGCT--GTGTTGCAGAGTCAGA-GGGAGTCA---CTCTGCAGAGCCAGCTTCTTTCGCTAAACTGAGTTTTGTTACTGCTCCTGGATGGGAGGGTcctcttcgttgcctctggac--gaagaagctgaagcttaaagcagctgtcactttaccaaggtcacacagT---------ATCCTTGAGGGATTTGAACTCTGACCTATGT-----TCTGTTCTGGTCTATG------------ACTTGGTTGACCTCTGTCAGCCTGTCTCTGTCTGGG--------------------TCCAGTCCTAGGTAGA--ATTGCCATCCCCCTTTTCTGGACTGATCTCCTACACCAAGT-CCCATAGCGCGGGTGGCAGATGGTcctcaacttctt-gtagggggaaaaatcatatcagaaactttataggg-tagtgtcaaaagaaggtaggattggctgtgtggcttgcaagtgt------ggactgtggttgttttgccacagtgcaataagaatcacatttggtggggagatcaaattagaacctctgaggaaagggtgctctagcggcacgtgacagatgacctccc-ttctagcatgtccaCACAGGTGGCACTCAACAGTCCTGCCCCATGTGAATTTGCTTTAGT-------TCTTTTCATAGTAGCAAACAGAAAGGCTgtactcactgctcagcagactgttgtcctaagggc-tttgcctcatgt-ttctttgctttacataac---atcaatctctacaacaaaccgctgatgggggcataataatcttttccaatttagagatgggg----------acaggg------aacagcttggtcaaggtcttagagtaagaggcagag----gggatctgaacttgagcaacctggctctgaagtcagtgctttaaaccaAGCTCTCAGACTCCCCGTTGTTT---CAGCTTTGTGCACAAATCCTTTGCTCTTCTATAGCAGTGTGCTCTCTTGGACACCTTCCTTC-CCCAAGGTCTCTTGCTTG----TTATGCTATGATCTG------------CTGTCTGAGGACAGCTATTACCTTGATGATGGAGTCATGC-----------CCTTGGCTTCTCCTTCTCTGTGTGA-----TGTGTTGTATCTTGCAAAGACCAGGTAtatttg---tttgtttat-----tcatttgtttatttaGTGTGTGT
s HiC_scaffold_1 115790048 3144 - 233722169 ctacaacaactacTTAGCTAGGTAACATAAGATGATTTCTTTATACCTGAAGACTTATCCCCTggattgtaaaatggggacagAAAGATGCCTTCCTCATAAAGCtgttatgagaatt-aaataagatCACCTATGCAAAGACTAGGCCCAGGACCTGGTTCATAATAAGAGGCTGTTAATATTATTGCTATTAATAATAAGTTCCTGATAGAACCAGACTCAGAATACAGGTCAACTTGCTCTGGAGTATTGCACAACTTCGTCTTGACTTGAGTTGCTTTGGGTTCCTCTGAGGCAGCAGATTGGATGGCTGAGAACACTCTGGACCTTGGGGCCCTAG-AGCT-GTTCTCCCAGTGTCTGAGCACTTG-TTCTTGGCCCTCATGGTCAGGTCTTTCCTCCtcccattttctcatctctaaatcCCACATCTGAGTTA--------TCTGACCTCTGC-TTCCCACCTGGCAG----TCTCAGCAGCAAAACCCCTGGAACACGCACTTTCCTGTTGGTCCACGTGAGCCTGTCTCCTGACCTGATGTTTCTGCTGAGACATTGAGG--GCTGTTTGT-TCTCTTAGACAGAGCTGCTAATGGCCAATTTTCCATGAATCATAATCACCTTACTCCATTAGGCAGGATAATTAAGACTGGAAGGTGGACCTCTTTGCTCAGCATATGGGAATTGACAAGCTGGCCTGGGCTTTCCATAGAACCCCTGGACCCACTCACAGCTGCAGCTGATCAACCCTAAACGTGGAGCCTGGCAGGGGTACAAAGTGCCAACAGTCCCCAGAGTCCTTCGATCATGGTATTGAGTACAGGTAACTGGAGCACATGTGACAGTATGCTGAAGCTGGAGTGGCTAATGTTTTCTGCAATTAATTTACATCCTC----TGTTTCCTATGTGCCAGGCCCTATACTAAacacatgacaaagaagagctcatttaatcctcaaagtGGCCTTATAACAT-GGTATCTATTATTCATTCCAATTTTCAGATGAGAATACTGAGGCTGCAAGAGG-TAATTAACATTCTCAAAGTCATACCTAGTAGGAAATAGAGCTGGGTTTTGGGTTTGGGAACTCTGACTCCAGAGGCCATGTCCTTAATTCTGTCTTTTTGGTGTGTGTatgtagaaaatagaaaaacacaataatttttccttctttttcccttccttattctCTCTGGTGCATTTTT-----ATCTACAAATATCATCCAGGCAGTTTCTTCATTGCAGGGAATGGTGCTAAAACCTTTGTTGTTTTGCAAATAACAGAAGGTTATAG-TTCCCCTAGGTCTCTGGCTATACCCTGAAGTCAATTAAATACATAAAGCTGAAAATGTTGAGGGGAAAATAATCCTGTGTTATGAAACCAAATAAAAATCACCTTAAGGTAGCTGTTGTTTTTAGATTATGCATGAGTGTGGATAATCAA--GAGTTGGCTGTATT-TTATGCACACAGCTTAATCTGTATCTTCTAAACAACTTTTGCAGTACAATTTTGGACAACAAATTAGTTTCAGATGAGGGACTCTTGCTCCTCCTTGAAAAACATTCTTCATTTCAAATTATCCTAGCTACCAGCCATCAAGGCTGACAAAAAAGCAGAGAATTAAATTGTTGGTACAAATCCTGGCTCTCGGCTGTCTCTCATTTGCTCATCACACATTCTCTTTGTATCTCCCCCTTT-GGGGACATCCTGAgcaaggaggaggagcagggctaGCATTACGGAGGGCTTCAAAGCTTTGCCGGAGCTTTCTTTTCATCCTCCTGGAGGCATTTACTCCTTTGAGGAGCCTTCAGCCAGTTCTGGAAATGGGGCCAGCTCAGAGGGGCCTCAGGGCAGCTGAG-ATGGAACCAGCAGCTTCTCCTTTAGGCAGAGCTCCCCACCAGGAGACCACACGGGGAGGATATGACCACCTACTGTAGCTTCTTTGCTCTTG------GGCAGCCAGTGAGGGATGAGGACTTTTCCCTAGGGAACCAGAAAGTGGAAGTTA-AGGTGGCTACATGTAACAAAGCAGGCTGGGGGTTAGTGTTCTGTGGA-----CCTGTCTTACTTAATTGATCTTTGTCACAGTTCCTGGAAGAGGATGCGCTCTCCATGGCCTCTGTGCATGAGGAAAGTGAAGCTTACACAGGATG--ACTTcatcaaggtcacacagctcatAAGTAGTCCTTTGGAGATCTGAAATCAAACCAATGCAAGAATCTTTATTGTTTCACATATCTGAGCACCATTTGGTTGGCATTTGCTA-TCTGTCTCCATGTGGGAGGGGATGGCTTCTGTTAGATCCAGCCCTAGGTAGATGAT-----TCCTCCATTCCTAGATTGGCCTTCCACACTAAGTCCCCACATCACAAGTGGCAGATGCTCCTCAGCTtcctagaaggaaagaaaagcatgTCAGAAA-TCTACAGAactatcttcaaaagaagatgaaattGGCAATGTAGCTTTGATGTGTAGGCTAGGATTCTATTTGTTTTGCAATAGTacaa-aaaagtcaca--------------aaaatta----CACAGAAGAAAGAGTGCTTTGGTGCCACATGAAAGATAACTTTTTATATTTGCATATCTAACTACCTGGGCTTCAGTCCTTCTGATCAa-gtgactttg-tttattcataaCATCCAATTATAATAGCAA----AAACACAACATTTATGTTACAGTA----ACTGCACCAAGGGCTTTTGCTTCACATCTTATTTGCTT--CATGACTTATTTAGATTCCACAAC-AATCTTTGAGGTGGAT---ACTCTCCTCCCCAATTTACAGATAAGGAATGTGAAGCACAGAGTAGTTAAATAACATGTTCAAAATCGTGgagcaagaaaggaagaaatgggaTTTAAACTCAGGCAGTCTGGCTT--GTGTCTGTGTTTTAACT---ATTCTCA----CCCTGATTCTTCTACAGTTTTGC-------CTCTTTGCTTTT-----GTGATGCACTCTGTCAGGTATGACCCTTTGGTTAAAGTCCCTTGTCTGGTTATCACACTATG-TCTGCAGTTAACATTTCTGTGTGGACACAGCTTTTACATTGATGGTGGAGCTATGAGGTGTTAGGGGTCATGGCTTTTCCTTCTCTGTGGGCAGCCTAGTGTTGCACCTTGAAAAGACCACAGATGCTTTACCTCTGCTTAGGAATAGCATCTGCCTATTTGATATATAT

a score=4825
s chr3           105217602 137 + 160039680 ACAGTGGACACTAAGAAAGTCTCCTTTCTGTATATATCCTTCATTCATCTTTGCATTTACCCAGAAAACAAGAAAAATGGAAGATCCAGGGCAGCTTGGAACAGAAAAGCCATTGCATTATGGCAAACTGAAAGGGT
s HiC_scaffold_1 115796521 135 - 233722169 acaatatccaCCAAAGAACTGTCTTTCCTGC-TATATCCCTCACCCAGCTCCAATTTTACCCAAGAGTCAAGGACAATTGAAGATCCAAGGTAGCCTTGAAT-GGAAAGCAAGTGTTCCATGACAGCTTGAGAAGGT

a score=30460
s chr3           105218159 2011 + 160039680 ttccttcagccacctgtatcgcttactcccttgcttcct---gagctctgctcagatgcctcctt--------gtcttctacccgcc--acttccagcttaataatgtgccacctggcacccccgctgcctcc---tgcctttattttccttgccattatcgctacacagtatccgatgtacgttgcctactcggcttgctctttatgtcttccccacactGTTTCCAATAG--TGTTCTGT----CATT--TACCAGCTCCATGGCCTTGTTTTCTGTGTGGCAGCATTGCTGGTGCCTGACCACAATGGATGCTCTTTAAATGCTTTCATAGGAAACGTGGGAGAGTGGTCTCTCCTCGCTGTCGCTGTTGCACTGCTGGCGTTTCGA-TACAAGCTAAAA--GTTCTCTCTCCCATCAG-TGCAAAGTCACTCCCTAGCCATGTGGACCATA-----------TAAGAAAGGGGATAGCAAGTTCTAAAGATATCACCAGGATCTCTAGATCCATTCTGCTCTGCTCTTGGTTC--------CCAGTCCCCCTTGAA----CCTCTTGGGTTTAGCTGGTTTGAGTTTGGGTTGATCACTTGCATCAGAATGAGTGCTAGACAAGAAACTCTGATTCATTTGAACTGTGATGAGTCAGCCAAGGGACAGAGTTGAGACCCATGGCAAGCACCAGAGGTAC----------------------------------TGCTCTCATC--------------------CCTG-------AGGAGCTTTCTGAGAGCAGGAGCCAAGTTCCCCACCTCTCCCTGTGTTACAGACCTGCTGAAGCAGACTGACCCC---TGCCCCTAGAGTGAAGGCTCACTAGAAAG-----AGAAGTAGGTCTGGCAGTCTCACCTGGATCTAGCCTCTCAGGTCTTTCCGGAT--------CCCTGGGT---------ACTCTGACAGTGGTGTCTGAAATCACA------------GGGTCTGCCATTAAC-------ATGAACTTGGGCAGCTCACTGTGGAGGTGAGCTCACCTGTGGAAGGCTGGGATGAATCACTCCCGGAGTTCCTTTCGGCATGCTGTCCAATGGAAGCAGTAGGGCTTTGTGGCTTGGTATGCAACCTCCCAC-TTCAGTCCCCTGAATCCAACACTACAACTTGCTGTTGAGTGTAAtctctgaggctcagtttcttcctactgaaaggggacacgtagtgaacagtaccttcctcagggagttgtc-tgagggttaaatga--------------------------------------------gaaggacacagaggtctcaggact-------------------------aagac--------------------------------------------aggtacttactaagttctcaGGACTGAGACAGG--------------------TACTTACTAAGTTCTCAGGACTAAGACAGGTACTTACTAAGTTCTCAGAAACATTAGCTATC----------------------CTTAGTTCTGTGACAGCAAAGACTGATTCTGGACCCTGCAGTGATCTCTGTTCCATCTCTCAGG---CAGACCCTAAAGG----------TGCATAAACACTACAGTCTCC---TCTTTGTAG---------TGACTGGAGGTAGCAGGTAGCACCCTAAGAG---CCGTGACTAGGTAGGTGACCTTGCCATGTCGTTGAAGGCCGGGGCTGGCATCACTGCCTTCACTTGGACAGTTTTCCACAGCCCCTTTAGCATATTTTGCTTGGGCTAGCGCATTTACACCAACCATACATCTTATCACTGTCATAAATCTTTATTCCTATGGACATGCCTAAACTTATGGGTTGAAATAACATAATTTGCATGCTCTTAAGTATGCAGATTGGCTTAATCTG-CTCAGAAAATTCACCAGCAGGCCTTGCAGCCAGCCAACCTCTCCTT-CAGGCCCTTAGCTTGATTTGAATATCACACTTTATTTTGTGGGGGCCAGTGTAAGAGGTTTGGAT-----------------CAGAAACAACTCGTCTTCT---ACTGGTTTTCACAGCCTTCCCTGTACACTGCTTT-TCCTACAGAGGACT------GTGTAATTCCCACAGACATGAAGTCAAGGTGAAGAAGcccccacccccaccccca---cccccGAGCTCCAGTTGAGTTTTCTGTATTATGCTGTGTTCCAAGATGGGGTTTTCAATGGAAGTAAGGCCAGGGGATGTCTGTACACTAACTGT-----ACAGAAGGAAAAGAAG-----------GTTTGGGCACA------------TGGCTCAAACCTACTAGGGACTCTGGGa
s HiC_scaffold_1 115799572 2221 - 233722169 TTTCTTCACACACCTACA-CTCCTACTCCTTTGCCTCCTTCAGTTCTCTACTTGAATGTCCCTTCTCAATGAGGTCTTCTGTCCTCCCTACTTCCAATTTAAGAATG----------CACCCCCGTGGGCTTCctattctcttattttccttgCAATTATCTCTACATAGCATATAGTGTACTTCacct---------tattttaatttgtttctcacCTTGTTTCCATTGGACGGTTCTATTCCACATGGGTACAGGACTCACA--TTTATTCTGCTTATGGTCATATTCCCAGTGCCTGACCACCATGGATGCTCACCAGATCCTT----------------------ATTTC------------CTGTCACACAGTTGGCTATCAGAATGTAGGCTTGGGCTGTTCTTTCTCCCACTAGCTGCAGAGCAGTACTCTGAGTGGGTAACCTATAGGCAGAGTGAGCAAAGATGGAGATACTAAGCCCAGAATATTTCATTGGAGTTCCTGGACCTATCCATGTGTCCCAAAGATTCAGCGTGCTCTAGTCTCACCAGGAACTTCCTCTTTGACTTGGCTGGTTTGAGTTAGGGTTGACTTCTTGCAACAGAAGGAATTCTGGCAGAGAAAGCCTGTTTC-TGAGGATGGTGATAAGTCAGCCA-GGGACCAAGCTGAAACCTTTGG---GTAAGGGAGGTAGCCATTGAGGTAGGACTGGTGCATGCTTAGTTGTGTGCTCTCACTGCAAATTAGCAGGACAATCTTCTGCTATGAAAGAACCCTCTTGAGAGCAGGAGCT-----------------CTG---------CCTCCTGAGGCAGACTTTCTCCACTTGCCACTC------AGGCTCACAGGAAAATCTACAGGAGCGTTCCAGGC-------CCTGAGTCTG----CTTGAGTCACTGGGGATGGAGAGTACCCTAGGTTTAGAAAGAGCACTGACCGGAGTGTCTGAAGTCTGAAGTCAGAATTTTGGCCCTGCCACTTACCAGCTATATAACCTTGGGTAAGTCACTGTATA------------TACAGA--------------TATTCTTAAAGTTCTTTTCAGCAAAGTAGTCAATGGAGGTGGTAGAGTAATATAATAAGG-ATACAAGCTCTAGTGTTTTGTTGCCTGAGTTTAATTCTACA-CTTGC-GATATGCCTAATCTCCAAGTCTGA---TCCTCATTTTAAATAGGGATACATAGT----AGTATCTACTTCATGAAACAGTTGTAACAATTAAATGAAGCCGGATATGGTGGTATATTCTTGTAATCCCTGTAttctgggaggcggaggcagaaacatcacaagttcaagcccagcccaaacaatttagcaagaccattTCAAAAGTTGAAAAAAGGCTGGGGAATTAGTTGAATGTGGAGATCCTGGTTCAaattccagtactgcaaaaagaaaaaaaaaaatgagtggtgCACTTTTAAAGACCTCAGAAAAAAGCTACACACAtactaaattttcaaaaacattagctacttattactattattattagtagtCGTGGTCCTAGTATTGAAAAGATTTATACTGTGTCCTGGAGTGATTTCTGCACCATCTCTAAGGTGCCAACTCACAAAGGCAGGACCCTCTCTGTACGGGTTACAGCTGCCCTTTCTCTGCAGAGGACTGGCTGATCAGAGGAAGCCA--AGTGCCCGGAGCAGCACCATGCCTCAGT----GTCCTTGCC---TAGCTGAAGGTTGGGACTGGCATTATTCATTTAATTTGGAGAATTT-CCATAGCCCTTTTAGCATATTTTTCTTGGGCTAGCTTATTTACACCAACCATACATCTTGTTGTTGTCATAAATTTTTATTCCTGCAGACATGTCTAAAATTATGGGTTGAAATAACATAATTTGCATACTTTT-AGTATGCAGATGGGGTTAATGGATTTCTGTAAATTCAC--ACCAGTCCTGTG--CAACCACCCTCTCCCTACAGAACCTCAGAGTAATTTAAATGTTGCACCTC-TTTTGTGTGGGATGTTGTAAGAAGCTTCAGTCTCCAGCCACCCCTAGACAGCTACAGCCCCCCTTTTCACACCTGTGCCTGTAGCCAGCCCTGCACACAGCTCTGTCCAGCAGAGGCCTCTTCTGGTATCACTGCCGCAGCCTT--------------------CCTGCCTCGAGCCCAAAAGCCACCAGACCCCAG--GGAGCCCTTGTTTAAGGCTG-------ATATGGGGAC----ACTGTAGTGGGGCCAGGTG-TGTCCAGGAAGT-ACTGCCAGAGGCAGAGGGAAGGAGGGCAGTACTGGGTGTTCTGGCACAGGTGACCACCATGGACTCACTCCCACCAGGGACTCTGAGA

a score=43156
s chr3           105222497 2265 + 160039680 ggactataTTAATGTATTAATCTATTCAGCCAGAAATTACTG-----TGTACT-TATTGTGTAGCAGATGTTGAGCTAGATGCAAGTCATGAACTTC-TCTCTGCCATGCACACTGAGCATAGTAATAGCAGCAGACATGTATTGAATGCCAACTTCACGAAGTGGCTCACCGATTCTTCCCAACAACGCAGG----AGGGCGTTGTTCCTATTCTCATCTATAAATGAAACTGAAGCTTTGTTTCAAAGGCTTGTCCATAGTTGAGTGTTCAGCAG-------TGGAGATCTTGGAGCCTGTAGTCTTGTCAAAATGATGG-CAGTGGAAGATGG-TACTATCCACA-----------------GAGGGAAGGGAGCTGAGCAGGGCCTCCGAGGCAGTCAAGGTAGGTGTTTGGAGAAGGAGACATGCGCCGAGTCCTGGGGTCCAGT-AGGTATTAGGCATGGGAAGTGGGCATGTGAGGAAACACAAAAGGGATTTAGGATGATG-TGGATGATAGAGCCAGTGAGGCTGGTTGGGGCCAATTTAGGAAAGCCATGGATGCTCTGTCACGGTGCTGAGACTTCATTCTGTAAACAGTGGTGAGCTCTCCAGCATTTCTGCTCTGTTTTTAATCAGGAGGCTGAGTCACTTGGACAATGACTCAGCCACGCACACTGTGAACTCCCAGTGACTTGAGATAGTGGGAAGAATGGTGCTGATGATCTAAAAATAATGGACAATTGGAAACATCATCACCCTGCCGGGGGGGAGGGGTGGTGCAGCCTGCCATG----GGTTTTCTGCC----------------------TAGTTAATTCT----AGGTTCTTGACTTCAGCACATGTTTTATCTGCTTGCTA-TGAGTGCACCTGTGGCCAATTCCTTGTATGTGTGTATGTTCATGCAtgtgtagcatgcacatgtatgtgaagttcagagaaagactttggttcttatttttcaggtaccatctaccttagttttttgggataagattttccactggcttggaacttgccaagtaggccagactcattgtctagtgagccacagtgagccacctgtgtctgtctctctgacactgagattatttcaagtgcatatatagatagcaacaaccccccccattatttctagggactgaattcaggtccttgtgtttgtaagacagcaatttgaaccatcactggagcccTCGAGGCGAGTGCCATCAGGCCAGTCTACATTGCAGGGCCAAGGATGGCAGGATGAAAAAACCAAAAAACAAAAACAGTTAGCCCACAAAAATCTCTAAGCTATGGTACCAAGAAAGGTAGCTGGGAGCTCTCAGGCCCCCAGGGACTGGGGTTGCTGGGATGGCTGGAGCTGAGAGAAACTTGGAGGTTTTAGTAAAGCGCTGGCTTCAGATGAAGGGGAGAGAGTGATTAATGCTGCAAGCTGCACAGAACAGCCAATTGAAAAAGCTATAAAAGCCAGAACAGCCCAGGAAGCGTTGACCCTGAAGCCCGCTTGTC-TGCAAGAGGGGATCATTTCCTCCACATTTTATTACAGCGATGCAGGGACACTCTGTGAATAGAATCCTGGGGAGCTGTCAAGTCTGAAAGTGGGTGACTGTAGGA-CAGAGGTTTTGATCTTTTCTCTGAGAAAGTTGTC-TCAGGCCCATGAATTTCTTTGAGATACCTCTAACCCACCACTCCGTTAGCACCTCCAACAGTTAAAAGAGAGCTGCTGTTTAAACTGGTAAAGGAACTTGCCTAGAAATAACTGCAAACTCCAGAA---------CCACCTTCTGTGCCAGGCACACAGGACCAGAGGCTCGAGATCAAAACCCAGCTCTGTCGCTAACTTGGGAAAGGCACGTCATCCAG-TGCACCTGCTTCCATCCTGTGACACGAGCGGGCCGGACAGCACGGTCTCCAACCC---CATGCCCTCCACTGTCTGATGTTTGTGGATGTTTTCTT-------ACCACTACGGAAATCAAAGGCCATTGATGAGAGAGCTGGAAAAGGTGCAGGCTTGTTATA--ACAGCAAGGTTTAGAGAGCTGgtgggcaccgaaggaggtgggcaggagggatcttctctgagtgcaaggaattagaaggtgtcttgtctaggaaaaaaatttaa-----aaccagaatgaaagcatggccagtctttctgctattatcaccatgc-ctgacttatctaagcaatgctggtaat-----ggatttctgctctcACCTGCATGGAGGA---TCCCAGCTTCCTGCATGAC---------TCTTTGACTTACAG-----------CATGGCCCCTTTGGCTCTTCCAACTGCAGGGAGAGGGAATCTCTTTAAAGTGTt
s HiC_scaffold_1 115808527 2028 - 233722169 gaaatacatttttttgtcaGTTTACTTGACAAGAAAATATTGAGGTTTGTGCCAGACATTGGTGTAAATATTGGGCAAACAGTAAAT-ATGAACTTTATCTATGCCTTGTGTAAGGATCATTGTAATGGcag---atatttattgagtgccGACTGTATGCTTAATTTCATCGATTTCTCCTAACAA-GCAGGTGCAAGGGTACTATTCTTATTTACAGATG---ATGAAATTGAGACATAGGTTAGGAGATTTATTTGTGGTCACATGTTTATCAGGATTTAGTGGAGTCCCTAGAACTTACATTTGAGTGGAAGGAACAGACAAGGAAACATGGGTACAAAGCATGCTGATGAGTCTAAAATGGAGGTAAGGTAACTCATCTCAATCTAGGTGCTGTTCAGGGATACACTTTAGAAATGATGGCTTTCATCGAATTCTAGAAAATGGCCAAGCATTTGACACAGAAAGTGGAAATGTGGGGAAGGA--AAAAGGACTATTGGTGATGATGGACGATAAAGCTGGTGAGGTTGGTTGGAGCCAATTTAAGAAAGCT-TTAATATCCCACTGTGGAGCTGGCACTTTATTTGATAAGCAAAGGTGAACT-TACAgctcttttgatctgtttttaatCAGGAGG-TGAGTCACTTGGGCAGTGATTCAGGCACACCAACTGTGAACTTTCAATGACTTGGGCTAATGAAAAGATTAGTATGGATAATCTAAAAATAACAGACAATTGCAAAAATCTTCAGTTTGC-------------TTGTAGAGTCTACCAGGACATGTTTTTCTGCAGTAGGGGAGCAAATGATTTGTGTAATTCATTCTCGAAAGATCCTTAGTTCTGGATGATATCAAATCTGCTTGCTCTTGAGTGTACCTGTGGCCA---------------TCAAGCCAGTGCATAT--------CACAGAGCTGAGAAGC-----------------------------------------------------------AAATTTTCTCCTGGC----------CAATGGTGgcaagataaaaatgtaaatgagttTCAG------ATATGCTACTGTTT-----------------------------------------------------ACTACTCCTGG---------------------ATTTGTAAAATA--------------------------------------------------------------------------------------------------------TAG--------------------ATGGGACCTGGGAAGGTGGCCATGAGCTCAC-TGTCCTCAGCAGCGGGCGTTGCTGGGATGGCTGGAATGGAGAG-AACTTGGAGAGTTTAGAAAAG---TCGTTCAGAATGAAGGGTGCAGAGTGATTAATGCCACAAGCTATGTGGAGAAACCAATTGAAAAAGCTATAAAAG------CAGCACAGGAAGCATTGACCCTGAAGCCCACACGCCATGgagaagggttttttttccttcactttttatTGCAGTAATGCAGAGACATTCTGTGAATAAAATCCAGGGGATATATTAAGTCCACATTTGGGTGACTATAAGAGGAGAGGTTTTGATC------CTCAGAAACCAATCATGAGGCCCAGAGA-------GAGATCCCTTT--------ATTTTGGTAGAGCCTTTAGTAGTTGAGAGGAAGTTCTTGGTTGAATTGGGAAAGGGA----TCTATAAATAACTGTTAAATCCTGAACTAGCTCTGCCACCTTCTGTGCTAGATACAGAGGACCAGAGACTTGAGGTCGAGACCTGGCTCTGTCATTAACTTGGGCAAGTCATGTCATCTTTCTGTATCTGTTTCCTAACTATGAAATGAA-GGGTCAGACTACATGATATCTAAGCCTCTCCTGGCCTCAGTAATCTCTCATCTGTGGATGTTATTTTCGATTTGATAGATCGGCAAAGCAAAATCTATTAATGAGAAACATTGCAAAAGCACAGGTTATTTATACCACAGAAAGGTTTAGAGGGCTGGTGAGCACC-AAGGGAGTTTGCAGCAG---TCTGCCCTAGGTGCAAAAAACAAGGAGATAG-TTGTCTGTGGACAATAATAAAGCGATAACTAAAAGCAAGGAAAAGGCTGTCTGCTTTCTGTCATCACTATGCACTGATAATTCTAAGGACCTCCAGTGATTAAAAAGCTTCCT--CCCCACTTGGATGCATGActgtcccctccctctccctggcatgccatgatttttattttacaattctttttattcaATGCTCTTTCAATTCCTGCAGCTCCACAGGGAAAGAATCCCTTTAAGGTGTT

a score=7882
s chr3           105225073 682 + 160039680 TCGTTACCAGTCCTTGACCTTGCTGTGCCTCCAGTAAAGGAGAGTGATGACTTG-TCAGCATCGTTTCC-ATAGCAACTAGGACATGACAACAGATAATGATAG---------------GCAGAGGCAGCGACCCCACAGAGATCTGAACATGGGATGAGATGTGTGAACCTGTCCCGGTAGGCTGTGTGATTTAGGAAGTCTTGAGCACATGGCCTAAGGGCAGGGTGTG--ACATTACCCAAAGGCCCAGCTCAGAATGGACAT-GGTACCTGACAACAGCCCCTGCCTCTCAGGTCAGGTTCACGGCTCTCTCTACCCTCACCCTCCTTGGCTTTTTTCCTTGTCCCACTGGTGCAGTTTCTTAGAAACGATCTCCCTTGCTCTCTGGGCCATAGCAGCTGCCATCCTGTGGCCCGGATTTCCTCTTCACCTTGTCTGGGTTTCTAG--------GAGCT-CTGGCATCCTCTGGGGGCACATGAGCTCTGTATTGGGGTGCTTTTTTATTACAAGCTTAGTCCCTTTGGCTCTCAGACACCTGTCTGGGGTCATCTGT-------AGCAGGCTCCCCAAGAAGGGCTTCCTGACAGC---AGAACTGTTCCTGTATATTCTCTGTGGACAGAATGGACTGCTCGGAAGCACGGCAGA----GGGCCTTTTGGGGAAATG-GGGTGAGGTGGAGCAAGAAGGTAGCAGCCCCAGGCCTGTGGA
s HiC_scaffold_1 115810575 632 - 233722169 TCTTTACTACTTTTTAGCACTGATTCATCTCTAGCAAAAAGGAGTGAGAAATTACTTTGAATTACTTCCCATAGCAAGGAGGGTGTGCTAGAGGATAGAACTAAAATGGGACCAAGGAAGCAGGGATAATAAACACAGAGTGACCAGAATATGCAGTGAGATGTGTGGATCAGTTACAGTAGACTGAGTGGCTTAGGAAGTCAGGTGCCCACGGCCTGAACACAGGGTGGGGAAAGTGCCCTGAAGGCCTAAATCAAGCTGAACACAGGTGTCTGAGAA-ATTCTTTGC---------CAGATTCTTAGCTC---------------------------------------------AGACTTCTTAGATGCCCAGTTCCTGGCTCT--------------------TCATGAGTC-----TTTACTCCCCACCTGATTCTGGTGTCTAGAATGGGAAGAGCTGTTGGCACCCTCCAGGCACATGCATATCCTGCATT--GGTGCCTCCCT-TTTTGGGCCTGGTCCTCTGTG---TGAGAGCCC---CTGCTGCCTTCTGTGTGAATGGACATACCCTCCAAGGAGCCGTCTGTTGTAGCCATAAAACAGTCCCTGCACTTTGTTTGGGGCCTGAATGG-TTTCTCTGGGGCATGTCAGACCCCGGGGCTTCCAGGAAACTATGAATGTGATGGAGGAGGAGACTGGAGG----AGGACTGTTGA

a score=45642
s chr3           105226807 2078 + 160039680 TGAGAGTTCGGTTAGGAGCAACTGAAG----AATTGACCCAGACCAAACTG-----TGAGGGCTGAGTGCTGGAT-CTTACAGACTTTTTCCAGTGTGCCA---TTCTCTTTTGATGTGCATGCCAGACACATATTCCCTCTTGCACATTTAGCTCCTAATTGTTATCCAGCGATGATTTATTTACTCTGACAGGAAGAGAGAAGGAGGGTGT--TTCCCACC--AGTTTGTCTT-TTTCTTTCACCTTTTTTTCCCTCCTGATTGTTCGAGCCACACATTCTTTTGGGGGGAACACAGAGG-------AAAGGAAGATTCTAGGCAGAAATAAATACTTCCTGTGAATCTCATTCG---GAAATGGTCTCTGTCAACCCGAGGTTGTAGTTTT--CTGGAATCATTGGAGGGTTCTGTCTGCAAGGGCTTGCTCTGTTAGCTTTAAGCTGTTACTTGAGCTCTCTATGATTCTAGTCTCCATGAGGCCAGGCAGGTG--TTATACACACGTGGAT-CCCTGACCCTGTCTCCTAGAAG------------CTAGGGTGGTTCCCTGTGAGCCTGG--CTCCTGGGCTGGAGCTCTTTTCTG--------TCTGTGGTC----CTGGAGTTATGTCTTTCCACTTTCTGTTGAAAT---CCTTGTTTCTCACAGCAAGGATGCACCCCACTTACACACACTTACTAATTGTTTCAAACA---------------CTTTAATGCTGTTCTTT--------------TCACAGCG-------------------AGTGCTGGGTTATTGGTCTTTTTGTCATGGGCTCAGAAAGCAACAACCCCACTCTAGGGTTAGGA--TGCTCTGCTTCC-----TTCTTCTCTCACAGTAAAAGCCAGAGGA-AGAATCTCTCTTTC--------------------------------CTAGGCCATGGAGGGAGCTGGTCTGTCAACTT-GCTTAGCTAATCAGTTCTGACCATCTCATAGTATGAAGCTCAAGGGAGCCTTGTTAAGATTCAGGAGCAGCTCTG-----ATGTTACTTATAGGTGACTCAGAGCCTCTGAGATCTGGCTCTCAGCCATGTTGTTTCTG-GTATCCCTAGACTGCTATGGGCTAGTATAT--TCTTAGAGATGCTGTCCTACACGTATAGGCCCTGAGGAGTGACCTGGGTTGTTTCTGCCAGATATCCTGGGTATTAGGCTTGTTTCTCAGCACAGTTCTCCAGTTTATGGTTGACT-TATGAATTATTTGATATTCTTTAAAAAAgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagGATTATTAtttaagacagggccttgctgtgtagtctagtaggttttctttgagtttacagtatttctcccttagtctcttgagtgctgagattacaggtgtgtgctgtcagatctggctCCTCCTTTCTTAATGCTAGCCAGAACGGCTTAAAGAAAGAAACCTAATTTATGTGATTTGATTTTTGTCTTTCCGATTCAAACACTGCAGAATAGAGCATA------TAATTTGAA-TCCAATTGTAA----TTTCGAACCTCTGCTTCCCTTG---------------------------------------------------------GCCACATGAGT---GGAGATCGGGAGAGGAATGGGAGCGACAAACATAATCATAACATTATCTCCTGAGCT-CTCTCTAGGCTCTGACATCAGGGAACTCAAGACC-TTCTTTCTAAGAACCCCCATGGCAGCATTTCTATGCCTTTAACTGCTTGGCATTTAGCTCCACAGTTCTACCT---TTGCCCACTCCAGAAGTGTCTGGGGGAATCTGCTCTTGTAGGGATATTCTTCTTGTATGACTCATCTGTCCGTGAGCTGGCTGGCTTGTTTGAATCATATCCACTGACCAACCATTAAGACAGAGTCTCTCCTCTTTGTTAAGTCTCAGCTGTTGTTGCTATCATTCTCAACCATGATCT-GTTTCAGAAATGGCCATGAGCTGAGG--TGACCT------------------TGCTTTTCTAGTACCCGATGGCCTAAGCATTTCTTATGTCATTCCAGTCCTGCCCATCACTGTGGAAATGATTCCCAAGCCTTGTGATCTTATGACAGGTTACATCCGATATGATGTGACTAAGTGTAAGGAAGAAGGGGACTGGGAGGTGGTGGAGATCT-GAGCTACATTTACCTTCTGTTCTGTAGCAAAGGACAAGCAAGCAGA
s HiC_scaffold_1 115811279 2096 - 233722169 TGAGAGCCCAGTTAGGAGCAAATAAATTGACAACCAACCCAAACCTAACTGAACAGTGAGGG-TGAGTACTGGTTTCTTACAGA---TTTACAATTTGCTAACTTTTCTCTTTGTCGCATACACCAGACACATATTCCCTCTTGTACATTTGGTTCCTAATTGTTATCCTAAGATGATTTATCTACTCtgacaggaagaaaaaaggaaggggcaACTGCTGCTGGAGtttgtcttatttctttcatctttttttggcCCCTGATTATAAAAGCTGTACAAGCTT--------ACTACAAAGGGTTTAGAAAGGGaatattttagacagaaatacatttttcttgaaAATCCAATTCTTCTGAGGTGAACACTGCCAACTGACAGTGGTAGTGTTAGTGGGCATCCTCGACAG--CCTGCCTTTGAGG-TGTGCTCTACCCAGTTCAGACT-TTACTAATGGCCCTTGAGGCAGCA-CCCCTCTCTGGCCCGGTAGAGGGTCTCTGTCCAtgtggaggtcccagccctgtctgacagAGCTCCTGGCTCTTCCTAAGCCAGTTCCCTGCAGGTCGGGGCTTTTTGTACTGGTCCTGATCTCTGGTCCCAGTTCTGTAGTCTCTTCAAGAGCTATGCTCTGCAATTTCCTGTTAAAATAGTCCTTATTTCTCACATCTGGCAAGCTTAATATTCATATACACTTCTTCATTTATTCACACATGCATTCCAAACTCACTTCAATCTCGGCATTTACAGATATTTTGGTTTACAGTACTATGCACTGTTATCATACAGTACTGG---ACATGTATAATTTCTTTGGGGTTAGCAAATGACACCCAAATTCTAGCTTCGAGAAATCCCCTTTTTCAGACTGCTCTTCTCTCAGGGTGGATGCTAAAGGgcagaatctctctctctccctcatccCTTCGCCCCCACCTCCCTTAGACCAAGCCATA-AGAGAGATGGCCTGTGATCTTAGTTCAGCCAATCAG--------ACTCTATGCTTTGAACCTTGAGGGAGCCTTGCTAAGATTTAGAAACAGCTCAGCTCAGACATTATTTAT-GGTGGCACGGAGCCTTTGAAATTTGGTTCTCAGCCATGTCGTTTTTGAGTGTCCCTAGGCTGC---AGAGTGGCATATGGCAGCAGAGACACTGTCCTACCTAGATAGGCCCTGAGCAGTGACCTGGATTGTTTTTGCTGGCTGTCCTGGGTATCAGGCATGTTTCTGAGCCTGGTTCTCCAGCTTTCTATTGATTCTGTGAGCTATCtaatattcttcaaaaatat-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tcttttttcctcagaGCCAGTCAGAACTGCTTCAAATAAGAACACTAACTTATACTACTTGATTTTTGTCTTAGAGATTCATATGCTACTTAGTAACTCATAACATGCTACTTTGAATTTCAGTTATGActtgtttgggttttgttattttcttgttttcagtgCTCAAAATCAAAGCCAGGATTTTATGTGTGCTATTATTGCACCCAGAAACTACATAaataaggaagagaggaagaggaattgAGGAAACAAAAGTAGTCACAACAGTATCCCCCTGGCTCCCCTCTGAGCTATATTAGAGTGGACCTTAAAGCTGTCCCTGACAAGAGCCTCTATAGCAACATTTTCATGCTTTGAATTGCTTGGCATTTTGCTCTGTAGT--CACCTCAGTTGCCCA--TCAAAGAGGTTTTGAGTGCTCTACTCttctagttct-ttctttttccatggcCCATCTCTCTGTGAACTGCCTGGCTTGGTTGCATCGTACCCATTAATCAATCATTAAGGCTGA--TTCTTCTTCCTGATGACACCTAGCTATTTTAGCTCTTATTCTGGGCTAACATCTAGCCTCAGAAATGGCCATGTGCTAAGTGCTAACCTCATGGGCAGACATCACAATACTTTTCTGGTgcccaagtcttttttttttccttttgctactCTGGTCCTGCCCATCCTCAGGGAAATGGTTTTCAAGCCTCACAATCTTATGTCAGGTTGCATCC-ATATGATCTGACTAAGGGTagaggaggaggggacagggaga-GGAACTGACCTGGAACTACATCTGCCTCCTGGGTTGCAGCAGGAGTTCAGC-AGCAGA

a score=23197
s chr3           105229425 727 + 160039680 CCCAAACAGCTCACAATACAGGGGATGTAGTGTTGA------CCAGGTCCTGAAAATTCTGCCTTTTGCTACTGTGTGATCTGCCAAGCTAGCAGGTCTTACACTGCCCCTAGGAGCACAGGAGCTGGCAGTGACTAGGAATCTCAGTAG-CAAGCAGAGAAGCTGGGTTCTATATACTCAACTGCAATTCAGGAGGACCAAGG-TGTAGAATTGAATTGCTGAGGGTTGG-GGTGGGCACTGTGGCACAGAACTAGAACACAGTGGTAGGAATGTATTTTTCTTTAATTGCATCTGTACTTTAGGAATTTCAAGTCTAAATATTACATGATATTAAAAGTTTGGGGC-AGGGtgcagttgaatagg---agtgattactcatgttccgtgacagagtcagataact-tggttgataacaattaattgtatgttttgaaatagct---agcaaagagtttggatgttcccaacactaagacatgatgagtgtttgtgatgacggatatgccaattacccc-aggccatcattacacgctggattcctgcattgaagttccacactgaaccttaaaagcaagcaccattgttgcctgacaattaTGTTTCTTTCaagtttgggaatgatgggattctaaatccctgtcttgggcggtcatgagacacattactatattaaaggtgttgagCCTTGTGATTATAAACAAAAACAA------TACCTGCTATACAGGTAAGCAAGACTTTTTAG
s HiC_scaffold_1 115813408 733 - 233722169 CCCAAATAGAACACAGCATAAA--ATGTTATATTGAGGGTAACTGACCCCTCCAAATCCTGCCTCACACCACAGTGAGATCTTTTCTGAGAACA--TCTTAGGATTTCTCTAGGAGCCTAAGACCTA-CAATGAACAGCAGTCTCAGTAGGTAGATGGAGAATCAGTGTCTTTGACATT-AGTTATATCTCAGGA---CCAAGAATGTAGAAATGAATTGCTCTGGGATGGAGGTGGAAGGTGTGGTGTAGAACTAGAGCACATCAGTAGGAAAGAATTTTTCTCAAACTCTATCTGTATTTTAGGCATtccaagtttaaatattgcatgtttaAAAACATTTGGGACAAGGGTATAGTTGAATAGGAACAGTAAGTACTAATGCTCTCTGGCACAGCAGAATATCTATGGTTGATAACAATTAAtcgtatatttcaaaatagcctAAAGAAAGGAATTTGAGTGTTCCCAACACAAAGGTGTGATAAATGTCTGAGAGAGTAGACATGCCAGTTATCCTGATGTGATCATTACA--------TAGTAtgttgaaatatcacactgtaccccataaatacatacaattattATGTaccagttaattttttttaaagtttaggaTTTATGGAAGGCTAAATCCCACTTTTGAAGATTCTTGATTTACATTactatcttaaagagaataaggCTTGCAAAAATACACACAGACAGACCTGTTACCTATTTAGCGGGTAAAC-AGACTATTTAG

a score=40143
s chr3           105239384 1400 + 160039680 ttcctccctcccttcctccctccctgcctccctgcctccctccctccctTGTTTATTTATCAATTTTTGTGGAGCTGTGTAAGGGCTCAGTCCCACCTAC-CTGTCACACAGGCACAGGGCTTCTTT-----CCTTTTCTCCTGGTAAAGCCCCTTCAGAGGGACACCTTGAGTTGCCAGCAAAGAGCAGGGGTCCCCAGGGCATCTGAATGCCCAGAACTCAAATCTCAGGGATGGCACTTCATGTCATATTTGGTTTATGGCGATTTTCTTTACTGCCACACCCTGCCCCCCCATGCTGT------GAATTAAAAAAACATAGC-AGAAATGTTTCCCA----GTCTTTGTGTTCTTTGTACCTCAGTGTTTTTTTCCAAAATGTCTCCTCTGAAATACTGTCAG-----GAAAACG------TCATTTCATTTCCTGCTCAATAGCCAGCATCTTCTAAGGTATTTTTCTATTAGCAGATGTTGGAGAGAAACTATGCC----------------------------CCGGCAAGTCAGGCAATAGCTTTCTTTAGAGAGAGCTTTTTGTCA-----GAGTTCTCTGGAGGTTTTAAAGTGCAGATGAGATGAATTTTTACTGGTAATTTTGGGGCAAAATTTATGAGAATCAGACAGAAGAATGGAGAGAAAAGAAGTGTGAACATTTGTTAAAGCCCACAATTCCCAGTTGTTGGTGGTTATTCTGATGGTGTTGGTAGATGTACACTTACAGA-ATTATGTGTTATATA-----------CGTGGCACATGTTACACTGGAATCTA-CATGCATTTTTTAGTTCATTTTCTATGGTACTTTCATTGTGGTGGGTACTGATAGTTTTAATTTAAAGATGGTCAAAGCAAGGTTGCAAGATAATACATTTTCTAAGGTCTCATGTTAAGCAATGGAACCAGAGTTACAGTCATAGTCCGTTGGCTTCGAAGCTGAGGTGCTTTCTAGGATGCTCGGCTGTGTCTG----------AGCACCTCAGAGAGGAATCCGCTGCC--CTCCATGTTCCAGGAGCAGCGGAGCAGTCTTC--CCTGCCCATGTTTATAGCTCCTGCCCGTTCTTCTGCTT-----CTACCATCCAGATTTTCAATTGCCTTTTGAAAGGAAGAATGATATACAACCCCAA-TCAATTTTGGCTGAAAAAGAAGAGCTTCCAAGTACATGCCACCGGGGGATCACAGAACGCCATCACTTTGATTTTTATTGCAAATGCTTAGGGATAAACACGGTAGTAAATATGCTATCTTGTTTAGCAGTTTAAATATTCTCCTCAAGCTCATTAGGCCCTGTCACTTCCCCATGCATGCTGTTCCATGTGTAGGAGGGACTCTCCCACCCCCACAGCCTGTTCTGTTTAAGGTA-ATGTTGCTGGAGTGGG---CTTAGGGAACTGTTCCCCACACTGAGAGGAGAG--------AGGAGGCTCCTGGAGGGACTTAGTGGTGG
s HiC_scaffold_1 115824850 1404 - 233722169 TTCCTCCTTCCGTCTCCTTTTGCaggcttcttt---tccttccttcactgaTCTGCTTAG-AGTCT-----GAGTCATGCAAGAGTTTGGCATCACTTACACCCTTATGTGAGTCCCAGGCTGTtttttctccctgttttctaGGAAAAGCCCACTGAGAGG-ACATTTTGGGTC-------------------------------------TTCAGAACTTCCCTTTCTGggtta----tttgtatctttttaggTTGGTGAGAATTTTCTTTACTGTCAT------TCCACCTGTGCTGTCCctcttacattaaaaaatatatttagaaatactCTGCACAGAGTTCTTGGATTCTTTGTACCTGGgtggttttt---aaaagattt-----gaaatattttcagcaatggaaaccaaattcttcattttattttctatttaa-------catCTTTCCAAATTGTTTTCTATTAACAACTGCTAGGGAGACACTGAGCCAAATTTCAGTTGTCTATGAGAGATCTTTCCAGTAGAGCATGCAGAAGCT-------GAGAGTGTGCTGAGGGACTGGTGAGTTCTCTAGAAGGTCTAAACTGCAGATAAGGC---TTTTCATTGGTAATTTTGTGGAGCAATTTGTGAACTAtgcacagaagaaaggaaagataaagaatatGA-CAATTGTTAAAATCCACGATTC---ATTGTTACTGGTTA-----ATAGTATTGT--gacagaaatttataaatattataatatatataatcatCTATCTCATATTATGTATTACACTAGAAACTTTCatgcattttctaatttattctcTATAACAATCTTATTGTGATAAGCACTATTA--TCCAATCTGTAGAGAGTaagagtgaagttatgagagacTAAATTTTCTAAAGTCATATGTTAAATAACTGAGCCAGATTTAAATTTAGAGTCACTTGGTTTCAGAGCTAAGATGTTTTCCTCTACACTAAGCTGTAACAGTCTTTGCAGTAGGACACTAGAGAGGAATGAGCTGTCATCTCCATCTCCCAGGGGCAGGTGAGCAATCTTTTTCCTGTCCTTGATTTAAGTTCCTG----TTCCTTTGATTAAATCCCACCATTCATGTTTTCAATTGCTGTTTGAAAGGAAGAATTATATATAACCCCAAATCAATGTTGGCTGAAAAGGGAGAACTTCCAAGTATATGCCACTGGGGTACTACATAACGGCATCACTTTGATTTTTACTGCAAATGCTTAGGGATAAACATGGTAGTAAATATGCAATCTTGTTTAGTAATTTAAATGTTCTCTGTAAG-TCATTAGCTTCTGCCACTTCCAAATACA-ACTATTCCTTGTGCAGTAATGATATCACTCCCAACACAGCCCTTTAT-TCCAGGACAGATGCTGCTGAAGTGGAAGCCTTAGGGAGCTGCTCCTCACACTGAGAATAAAGAGTTTGGCAGGCAGCCCTTAAAATGACTTATTGATag

a score=42898
s chr3           105252713 3288 + 160039680 atttaaaaa-----aaaaaacattgttaatccttttactttaaacagtcaagtatctttcaaagagatttaaaactaagaaaaggtaccttttatactccacctcttatatttgtcatgttag-----gtcttctccatagttttctagatcctaatttgtatcttgcattgtttcctttccatctgaaggtttgtctgttttttttttttttttttttttttggttttgttttgtttttgatttttgtttgttttttgctttgctttgttttgctctttgccttacaaaggctgctctgctggtaatgaattacctgtttttgtagacctgaaaaccatttatttt--gtcttttgggttaaatgatatcctaattttgtaatttccagcgtgacagtttctttttcctttaagactttaagatacaactgcaccatcttccaactcacatcggttctcttgaaaaatctgttgtaattcttatttttgttcctgt----gggataataagcttctctt-------ccctctttgactcacttcttaagagttaatctctcttattagtttccaacaattGTTCAGTTGCtttttgagatagggtctcattgtgtattttgaactagcctcaaaactcataatcctcctgcctccacctcctgagtgctggatttcagacaggtaccaccatactcgtctCATGACTAATTTGGAAAatgtttattttatgaggatatttatatgcccaagtatgtgtgtgcatt---acatgtatacaggagcccatggaggtcagaagaggt--------attggattctctggaactggagttacagaggtctgtgaagtgccatatttgtgttgggaatcaaacctgggtcctttgcaagtgcaatgagtgatcttagttgtggagccatctctctactcccTGATTATGACATTGTTGTGTTTTTACAAATGCCTCTTTAGCTTAGGAATTACTGAGTTTTTTTTTTTTTTAACATCAAGTTCCCTGCATATATATAGACATGGAGATTTTCATACAGTGGGGTTATAAGAAAACACACTTAGC--ATTCCCTGCTATACTTTCagtcaaaatgacccttcagtgttgtctcaaattctcacatgggaactaggccccatgttggatagtcactgggtgtaggctgccatcagaaaggtagtatgcctagttcagaaagctgtcttgagGGGAGAGCTCTTAGTTTCCTGTATTTAGCATTCTTGGTAGTTGAGGCTCATGAGTGTCTCGCTCCTAAAGAAAAAATGTAGGCAAAACATCACAGTACCCTCTGCAGAAGTGCTTCCTTGA--AGTACATCCTGAGCTCCAAATCACTTCATCCAGAAGTGGTGTGCACACTCTTA----ATTTCTGCAGCAGACGTGGCTTCTACCGTTTTCAGCTCTTCCATCATTGATGCTCTTAGACAGTTACTCACCTGCTGCATCTAAATGAGTTCTTAAGTTCTTGGGAAAGAGACGCTGGTTTTACCACTTTGTAGTCCCCAAAGTGAATATCAGAGCATTGTACTCACTTACTAGAGGAGTAACAACCCCTCAAAGAACTGCTTGGAACACCTCATTCAAGTTCCTCATGTTAT--CTGGCTAAACTAAGATGGAAAGAACTGG---CACAACTGACTCTAGTCTTGGCTGAGGCTAGAGTGCAGGTCTCCCACAGTGTAGTTCAATCATCTTTTCATTGTGCTCAGCTGTATGATAGTGAGTCACTGGTCATTAACACTGTAAATACAATTGAGTATTTATTATACATCCAAACAAC-ACTAGCTCCAAG-AGATTTCAAACGAACATAAAAAGCACTGGATAGATTTTTTTAAAGGACTATAGGATTTGAAAACTCAAAGATCCACTTATACAATGAAGTCTAAGCAATATACTACATATTTGTATTTAAGTGCTTAAGTGTAAATATTTAGATGCTTAGATAAACAGAAAGAGTATAATGATATCTTCTATATTCACATGTCATCACTCTGGATTGTGGAATTAATGGCATTTTCACCTGCATTTAGAAGTGTGTTAGTGATAAACAGATTAATTGTACCATTTTCAATGAATCTGTAACATATTGAGTTCGATGATTCATCTCAAGATGGTATTTTTCTTCAGTATGCTTGAgacaagttgcttgccacatctgtagctagtcagatctatctttgaacattattgccttgttagctgttcttatggttgatctagaatctatttccttggcaatttagctagtgaatctattttactctatggccattgattggaagttttatcttaattctacatgaaaggccttgaaacataaagacagtcagctcattctcctTCCAGCCACACACTGTCCATCTCTTCCCAATTTTAAGATATTGAAGAATAGCCTTAGTCATTGAGAACCATCCTGAATCACATCTGAATGTGTATC--AGGCAACTACAGCCAGAGAATGTCTTGGAGCGAGAATCACTGGGACATTTTCTCATTGAGGATTAATCAGATGTTCAACACATGCCATGATGTGGTCTGAAGACTAAGGGCTATACGTTAAGATGTTTctcctgggattcacagtctggaggagacagatttatgacagatgatgaccatgtggctcaatgaagatttgaaaag-agatcaatggaatcccagagttgtgactaattctccctggagaagcacagaagaaatcgcaaagggtgtgacattagatctgtgtcttgaagggag---acaagtttgccaatg------cagaaagatgcatggggaggctcccagcattccccagaggaacaTTGCTCCTTCCAGTATAGTGATAACTTCTTTGGAGGGTCTAGTCCCATAACAGAGTGAACAGCTCACTTCTTGGGACAGGAGTGAGGATGGAAAGGGAGCCTGGCAAGAGCAGGAAGCCACGG----------------AAGGA------------------------------------------------TGCTATAATATAATAGAAGTTTATTTTTAAGGTATTTCTCTATCCTTGCTCCTAATCTGATC--AGTTTTCTCTAAAGAAGTTGAAGGACTAGACTCAAGCTTTCC-----AACTTGGTGCATCAAATTTACCTCTGTGTCACTCAGCCAGATACTCTGAACTACATATGCTAGCCA-GATCCCCACACTCTGCCTTATTCTTAGCAACCCTATCCATTCACATTCTGGAAGAG---GCTCTAACTCTCATGTGTCTTT--CTCTATTTGATTTAATTGTGTTGATAGGAACATTCTGTCTTGGCTGGGCTGATAAATATGCCTGATCAGTGAGTATGGAAAGAGAGCACA---------------GAGACAACCTTGCTACAAGGTTCTATCAACt
s HiC_scaffold_1 115867690 2680 - 233722169 atttaaaaacttccacagcatattattaatatttttactttaaacagTCAATTGtcccttaaaaatatttaaaaataagaaaaataac--tttaagtTCAGTATC--ATATTTACCATTTTGATTGGTGTCTGTTCCACTGGTGT--AGATCCTAATTTACAT--TGCATTGTTTTCCTTT-ACCTAATGGTTT-------------------------------------------------------------------TTAACCTGTCTTAC-------------AGTGCTGCTCTGCTGGTGATGAATTATCTGTTTTTGTGTAC-TGAAaagactttattttcctttttttctgttaaaagatACTTTA--TATACAATT-CTGGAGTGACTGTTC---TTTCTTGTAGTTCTTTAAAATATGACTCTGCCCTCTTCTGCTTTTCTTCATTGCTGCTGGTAAATCTGTTGTAATTCTTATTCTCTCCCCCGCCCCAGATGTATATAGCTCttcctgattttattatttttgactaattt--taaaattttatatctattaCCCGTTTTCAAAAATTTAGTGATTG--------------------TGATGTTCTTTGAAGTGGTTT-------------------------------------------------------------TACTC-----------AATTTAGGA---------TTTACTGAGATTTTTGGATC------TGTGTGTTTGTAGTTTAACTTGTTCTCAAGTTTTGGAATAGGTTAAAGGAGATTTTCATAGGTTGAATTTTCTGGAA----------ACATGTCTTTGAATGGATATTTTCATGCAGAAGGT-----------------------------------------------------------TTCCTGG----------GTTATGTATTTATGAACAT---------TTGAGAGTT---GAGTT---------------------------GGata-gcagaaaaatttaaattgtagtACAGTG-------AAAAGAGAGATCCTAGCCAATCCTATGAGTTGTTTACAACTGACATGGCCCTACATAGTATTCTCAGATGTAGACAGGGCAGCTAA-CACCATGTTgt-------ctgggg-------------agaaaggaactcc-tCTAG----------------GAAAAAAAAGTTGTAAGTTATCTATAGTACATACTTCTGGAAATTGGGGTTCATGAATATCTCACTCCTGAAGGAGAAACGTAGGCAGTGTACCA--GTGTCCTTCACAGAAGTACTTCCTTGTGTAATATATAATGAGCTTGAAATCAATACTGCTAGGTA-GGAGCACAGACTTTTATTTAGTTCCTGAAGAGTATATTACTTT----------GGCACTTCCGTCATTGATGGTCTTACATTGTAACTTGCCTGTTTCAGGTATATAAGTCCTCAAACTTGTAGAAAACAGGTTATATTTTTACCA-TTCATAGCCCTCAAGGTGACTATTAGAGTATTGTACAAATTTTCTATTGGACTAATAACTTCACAAAGAAACTTTTGAATCACCTCATTCAGATTCTTctttttacagatgagtaaattAAGACTGAAAAAAGTTGTGCCACCATTAATAAACATCTTACCTAAGACTACAACCCAGATTTCTTTACCTATAAGTCTGTGCTATTTTCATAATCCCTGGCTATATCATAGGAAATCATCAGTAATTAATA-TGTAACTATGATTTTTTA-CTAGTATgactccaataaataaaaagctcTAAGAAAACTTTATATGAACATGAATGACATTAAACACA-TATTTTAAGGAAATGTAGGATTTTaagattcaaagatccaa-taTACAATAAATTATGAGTGATATAATTTCTGTTTATAAGTAAATAC-AGATTTTAAGTATTTCAATACTTAAATA-----------------------CTATATATGGACAT------------------------------------ATCTACAT--------------------------------------------------------------------------------------------------------------GAAAAGCCTCCTG--ATATATGAAGACAGT------------------TTATTCTCCTTTCAGTT--------------------ATACATTTCC---------------------------------------------------------------------------------------------------ATCCTTTTCCTT------------------------CCCAACCTCAAAATATTTGGGAATGTCCTTAGTCATTGAGAACCACCCCAAATTACATCTCAACAGGTCTCTGAGATATATTTAGGTGGA------CTCAGAATGGCAATTGCTGCAATATTTACTCACTGGGCATTAATCAAATGTTCAACATGTGCCATGCTGTGGGTTAGAACATGTGAGTGA-ATGGTAAGATGCTTCCCCTGGGATTCGCAGTCCAGA------AGATTTATGACAGATGATGACCATGTAGCTCAATGAATGTGTGAAGAGAAGACCACTGGAAGCACAGAGTTGTGACCAACTGTCCCTGGGAGAATGCAGAAAGCATTGCAAAGGAAGCAGCATTAGAGC--TGTTTTGAAGGGAGACAACAAGTTTTCCCTTGGTCTGACACAGAGATCAGCTAAAGCCACCCCTGTATCCC---AAGGGATCTTGCTTCTTCCAATACAATGATGAGTTCTTTAGAGATTCCTGTTTGATCACAGGGTG-----------TCTTG-----GGAGTGGGTAAGGAAAGGTAGCACAGCATTGGCATGAAGCAGCAGGGTTGGGGATCAAACCAAGGaactcatgcatgctaggcaagcattctaccactgagccacacctccagCTCTTATAATCTAGTAAA---TGAATCTCTAGATAGTTCTCTCTCCTTGCTCCCAAGTTGATCAGAGATTTCCCTAAAGAAGTTGAACGACTAGAATTGACTTCTCCTATAGCACTTGGTAAGTCAAGATTAGTCTAGTGTGACAC--TTAGATTCTCAGAACTAAATGTGTCAATCATTTTCCTCCCATGCCACCCTACTCTCAG-AAATCTGTCATTCTACAGCTTGAAAAGAATCATTCTAATTACCCTGTGCCTTTACCTTTGTACTATCTGATTGTATTAACACAGACACTGGGCTCTTGATAAGTCAATAAATAGTTCTTTTAAG-GAATAtaatatagaaatacatataGCCACTAATCTGGGAGAGCTTTGCTGTATGTTTCCATCAACT

a score=48683
s chr3           105256699 1394 + 160039680 AAAAACATGATCACAAAGCATAGAAACTGGCCTAGGGAGAGAGAAATATCACTAAGATA--ATAGAAGGTATAAAAGACATGCATTTTGAGTTG-GAAGACAATAGAAGAAGAGAAAGACTGTATCAACTGCCA--TTCCTGTAAAACTAATTGTAA-TTTAAAAGTAATTTTgttctatgagattcctctgggtccttgaaataaattccattttattccaattaggttgcatgaataactcttcctttcaaccaaaaCATCAGTCAGGACATGTCATCTGTCTGGTTTACCTCTTTACATCCTTTGTGATGACGAG--CAGAAATAGGTTGAAAATTTAGCCCCATCTCTAGA---------TCTCTTGACCTAGAAGCAAGAGGCCCCTTTAAGAGAAAAGCTAGCTTCTGCAAGGACTGTATTTGGCTAGTCATGATTCATGATGTCAATTTGGAAGTGTGGTCCTTCATGTTCCTGCCTACTTCCTACTCTCTTCCAATATGTTTGCTCGCATGGTAGGC-AGGGACCATGGGCAGCTGTCCATAGA-CTTTCTGTGGCTCTGAGGATTGCAGCA-ATCTCCCTGTTCTGGTGGCTGTAGCCTGAGGGAGTTGTTGATTTCCTCTGCCAG-----------------ACCACAGTGTATGAGGAATTAGAG--CAGTCACCTACACTGTAAGACAGAAATAAAAATGTTCTCAGTCTCTT--GAGTTACATTTAACTTTATTTCTCCCCAGCCCAGGTGGTTTCAATTAATTTGCAAGCATTTATTGACCATCTACTGCGCATGGCCTCTCCATTCTTTTTCTA-------TACTCCTTCTATGACTTCCATCCCTCAGTTGATATTCTGAAGACCTTTCTGTCTTCCCCAACACTCCCCTGGGGTGCTGACTCATATCTCTATTTTATTGCTGAACTTTCCCAAAGAGCCACCCACAGTTGCTAT-----CTTGCTTAACCTTTTGTAA--TCCTTATTGCTGCAACATCTATCTTCTGCTTTCCCCATGATACGGTTTGCTTCTCCAATTCCCTGCACTTCCACAATAAAT------ATCTCTCTTTCTAAGTAACAGGAAGTGACTTTCTAGTCCTGGTAATTAAACAATCTCTAAGTCATCCTCATTTCCCCAGTTCACCTCTCTGACCCCTTCTAAAGATCACTATAATCTGACTTACAGTGCTTTCTCCACATGTGTCCAAGAAATGAGGCTTCTCA-AAGCCAAAGTGGGTCCTGGAACATGCCCATCTGCTGCAACATCATACTACAGGGGCTGTTGGTAAAGTGGATTGGAGCATATACCTTGGGCTCAAGCTTACAGAAGATCTCTCTGTGGCTGCAGTCA-AACTTGAGTAGGCAGCAGCTCTATTATTGTCCCTTCAGATATTAAGCAGAAGA-AGGGATGGTTAATGGCCTGAAATATGG
s HiC_scaffold_1 115870452 1414 - 233722169 AAAAGCAGGATTATAA--CATAGAACCAGGTATGGGGAGAGAGGAACATGGTGAAGGTAGCATGGAAGAGGTGAGAGACATTCAGTATGAGATACGAAGAAGATAAGAAGAAGGAAAGGC------AATTCCCAATTTCCTATAAGGcacattataaattttaaaataattttgttgtgTGAAATTCCTCTGGATCCtcaaaataaattccatttt-ttCAAATTAGCTTGATTGAACATCTAT-CCTTGCAACCAAAATATC-TTTATGACAACTCATTTGTTCAGTttacctctttaatttctttatgatGGCGAGTACATGGCTAAGTTAAACTGTTAGCTTCTTCTCTAGAATCTCTTATTATCCTGACCCAGAGGTAAGAAtctctttaaagagaaaaaacaacttCTGTTAGGATTGCATTTGGCTAATAATTATTTATGATGTCAATTTAGATAGGCGATCTTGGCTATTCCTGCATGTTGTTTGCTCTTTTCAAATTGGTTTGGTTTCATAATTTGCCAGGAACCATGA-CAGCTGGTACTAGAGCCTACTGTAGCTTTGAGAATTGCAGAATGTCTCCCTGTTCTCTTGCCTGGATCCTGAGAGAGCTGTTTATTTCCTCAGATAGTGATGCCTGGTTCTCATACTCAAATGCTTGAGGAATCAGACACTAGTCTCGTAGCATGTAGGACAGAGTTACAGATATGCTCGGTGTTCTTAGAgacatatttaactttatttttcttcagccCAGGTGGTTTCCATTAATTTGCaggtatttattgagcatctactgtgCATTAATTATCCTATCTTTCTTTCCCTCATTTGCTCCTCCTCTGACTTTGATCCTTCAATATACACTCTCACAATCTTT---TCTTCACCAGTACTCTCTTGAGTTACTGACTCATATCTCTATTTTACTGCTAAACTTTCTCAAAGAGCCATCCACCATTGCTGTGTTTACATCCTTAACCTTTCACGAACTCCTTATCTCTGTGCCATCTCTCTTCTGCTTTCCCCACCat-tgatt---ttttctgtttctctatatCTTTACAGTAAGTGCATTAAGTTAACTTTTTAAGTTACTTTGAGTAACTTTCTCTTCCTTGTAATAAAGAAATTTCCAAAGCatccttattgttttgtttcacctCCCTGAACCCTATCCCATACTAGTATGCTCTGACCCAGaatgtttttctc-----cttgaaaGGAATGGAGTTTGTCACGAGT--AAGTGTGTCCTGGA--ATACCCAAGTCTTGT---------------GGGTGTTTTATAACACTGAATGGGTCATGCATCATGAGTTCAAGCATACAGAGGGTCTCTCTGCAGCTGGTTTTGTAGCTTGAATAGGCAGTGGCTTGGTAATTG-CTCGAGAgatagaaatcagaaaagaggGATAGTTAATGGGTTGAAACTTGG

a score=21670
s chr3           105259337 1570 + 160039680 TTTAAAAGTTAATCTGTAAGGTGTGATCTCCTTAG--------TTTTGGCATTTGTAGTCTCA--GATATGGAAAGAGAAACAGCAGATCTACAATTGCCATGGGCATT-TAAGAGACATCTAGACAGTGCAAAAACAAACACAAGCAGGGGTGAGG-----GGGAGGGGAGTTGGTATAGGAAGTTCTATTTCCAGGCAGCTGCTATCACAATGAAAC------AGAGGTATGGCCAAATCCTACTCtgttaaaattgaagggaccattagagagcttccaatttaaacctctcaactacagaataaggaaaagggctcacccagacaag----tacattgaAGCAAAGTTTCCGTGTCTGTCAAAGGCTAGACCAGGCCTGGATCCATATTGTC-----TCAACCATCTATTTACCAATATTCCTGCTTAGCATCC-TTAAGCCAGTCTGGGAGTCCCTGCTGCTCTCTGAGGATGTGGCCCAGGGTTTACAGCTCAAGGTAGACTAATCTTGGGCCACAGCTTTGAATGTGCACCCCAACCTTCATTTGCAGATGTGTCTGTCTAGTTAGTCCTTCATGCTGTGAACCCCTTGGCCAGTTCATAGACCTGGTTGTTATTTTCCT---TTCCCCAAATAGTACAATTCCCACCATCTACTGCTTTTTTTGGTCTTTATGGTTTCTCCTTGGCCTGACCTACTTCCTTTATTCAGCGTGTTGTATCTCAGCCATTCTCATTTGCCTCTCATGCACCTGATAGCTCATAACTTCCCTGATAGATTACTTTTCCTCATATGCAGTCTCTGTCTTCTCCAagagacccttaactcatcctagaacatgaattctttggctgtcaggtaatatctaggtaccctttctcataacaatgctttcaaacatgttaagaacaatgtgtagaaaaagattgtgttgttttgaaatgccaatttgtactatagcaatatatgtgctacttttttttgagtcaaggtctttatatgtagtctagactgcctttgaacttgcaatcctcctgctacctcctccatggtgggattacaggcatacaccactatgccgggctaatttatgtgtttttaaatcagtgtgttaaatagcaagatctaccaggaggtataatgatatctata--gtactgaagttgtgtttagcactaatgatcttggaagatatttgcgacagttttaaggtgacatgaaaatgcctataatttctgtgactgacacaatcctggg-------------tgctgtgctgtgctgttgacaagcct--ctgaaaggaacactacaccacagttaggagttagtaaaagtgaaggtgtgatgttttaccatctaagtttatggagcctatgagttttatacacagactGGCAGCCACTGTAGCCTCCAGGCAAAGGCATCCTGT--CTTAAATGGCCCTGTGACTTGAATGCTGCATGGATGGAGGCATTATCCAGATTTATG--TTCAGACAAGGGCAtccatttggatatctcacaggcatctat-gaaacttaacctgtcaaaagatgaatttctgctcttaccctccaagacaacgcctcatttttctcatcccgatgagtattgtctc
s HiC_scaffold_1 115872224 1340 - 233722169 TTAAAAAATGGATCTGTGAG-------TTCCTTAGGAGCGTGTTTTAGAAACTCATAGTCTAGAGGACAGGGAGATGAAAATGACAGTTTATAAATAG--ATAAGTATTATGAGAGAAATCTGAatagtagaaaaagaga---aaacagaagagaggCTCTCAGTAGCCCAATTAATTCATGAGGTTCCATTACTAGCCAGCTGCCACTGGAGCAGATCCAGAAGAGATGGGTGAGCAAATT-TACAGGGTCTGTATTGAAAGGACCTTTAGAAATACTCTAGCTCAACCTTTTCAGCTATGAAATGAGCAGACAGACCCACCTGGGGAAGGAAGTGGATAGGATCAAAATCTCAGAGCTGATCAAGAGC-----AGGGACTGGATCCCTAACACCCCAGATCACTAATCTCTTTATTTGTGTGTCTGTCAGATGTCCATCTATCCAGCCTAACAGGCATAA----------------TGGCTCATGGTTTCCAGCTCAAACTATATTGTTCGTGGGCCACAGCCTCACTTGTGCTCCCTAGTCTCCATTTCTAGACTTCTCTCTCTAGTC-TTCCCTGAGCCTG-ATGCCTCTTGGTTAGCTTA---AGTTGgttactcttttcttttgttctcca--------aACTTCTCTAACTTTCTGCTTCTCTTGG-CTTTGCTATTT------------------TTCCTCTATTC---------------------------------CCCATTCCTCTGGCAATTTCTGCTTT--ATAGTAGATCTCTCGTCCTCAGA--CAGTCTCTGG-TCTTCCAAGGG-----------CTCTTAAAGACTGAAACTTCTGGCTGTCTGGTGATATCT--------TTTCccataataatg-ttttaaatctaTTAAGTAAAGTATAtagaacaa---------------------caaagaaaaaaagaacaacata---------------aaaaTCGAATTTGTTATA----------------------------------ATGCTA-------------------------------------------------TATATACTTTT---TCAATTAATCAAATAGTGAGATCT---AATGAATCTAATCATGCCTATAATGTAGTGAAG--------AGTATAAATGATTTTGCAAAATATCTCTAGTAGCTGTAATGT----TGAGTATACCTGCAATTTCTATTACTGACAAAAGCCGCAGGTACTGCATATATTGCTATAGTGTATTGCTTTCAATAATAATTGAAAGAAGTACTAAATTTCAGGTAAAGGTTagtgaaaaagaagataaaatatttttctattcaagTTTATGAACCCCCATACCATTATGAACAGACCCTCAGCCATTATGGCCTCCAGCTCAAGAAATCTTATAACTTAAAATACTAT----------TGCTG------TGTAGGtattatctatatttatatcttcaGACCAGGCTGTCC-TCTGGATATCTCACAGACACCTATCCAAAAGTAATGTGGCAAAAGATG------TGATCTTACTCTCCAA---AACATCTCATTTTTATCATCTTAATAAATGTCACCtc

a score=43594
s chr3           105261344 2848 + 160039680 GACCTTGtctgcttctggacatggttgtctcccactcacccct-ctggctctaatcaagttaaccttcattgaaaatgccatctccttagagaagcctttcctgatccctcaacctagattat-tctttcttaccttgcgcccctcagcaacttatcCTTTACATAACAAGCTACCTGTGGTAATTATTATTTAATATAAGACTCAAGTGGCCACTTAATAGGTGTGTCTCCCACTACA-TGAGAGTTCAGGGAAGGCA-GATTTctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccccctcccCCCCAGCACTGAACACTTCTAGGCATATTGTTAGTAAGAACAAACAT--AGCTGCTGAATGAGTTATAAGCTATTGCACCTTTTATTTCTGACATCTGGCCCCAGACTCATCAAGTATTCCAGGATCATACTTCCTCTTTTATGCACATCCACATTAA-AGCTCCATCTATATGTAAGTAGTTCCCAACCTAATCAGAGACAGTTACTCTCAAATTCATTTATCCATTCACCCattcattcttttaaccattatttattgagcctgttctaattacaaggcacagtgccag--actatctaagattaaaagatagatgcaaggctcggttcttgtcctcaagacatttacaatatcaagggagatttaagaagcagtcatacaattatagcagggcagtaggagctctgtgccaccattagctcagcattgctattggtgac--aagtgcagaagacataagaacagcacatctgcctagagattttaggaa--ttttcatggtgaaagtagagtcagagctgactcttgccaggtggatagggcttagacagccagagctggtagaagaataattctagtcaaagACACAGAGCTTAAAAGCAGAAAGATGTAAGGAGTGTACA-AAGGTCCATGGGTGAC----------------GAGTTATCAAAGCTAGGCAGGATGTCTATGACATTTTTATGTT----ATCAAATACTTGTAAGTGTGTCAGAAAGGTTGTTTAGAAGAAGAAAAAGGAATGAGAAGTA---------CCTGGAAAGACTCAACAACCTGTGTGATCTTTATCTTGG----ATTTTCCTAACTCAATGAAGAGATAATTAAGTAGTTAAATGTAATGCAGAAGAGCT----GGGCAGG-------GGGATCTGGG------------------TATGGTCTGGAGCAC--------------------------------------------------------------------AGGGGGAAATTCGTGCCAGAAGTGGAT------------ATTTCT--------------------------------TTGTCTTCAACTGGGGGATGCTGACATGCAGATATCACAGGGGTTGACTCAGAGTTATTATGGCCATTCTCA-TGCCTGGCTAAGAGGTGACC-ATGCTTCAGCTA----GTATTCATTCAggcttacattaccaaataccacagctggtagctcccacagcaagcatttatttctgtaagttttagtggcttacagttttag-taaaggtgttagctgagttgg-tcctgat--ggggctc-ttttctgactttcagacagctgccttctcactgagtgctcccctggtcttttctaactatgttcacatggacagagagatgacgcctcctcctctttttatggggccatgaatcttttttgattaggaccccattatcctgccattttgaaacagtcacttcctaaaactctgctttcctgtacacatatattggagattggggatataatgtaagaatttaggtgaaactattcagccTCTGGGTTTGTCttagggtttcacttctgtgaacagacaccatgaccaaggcaactcttgtaaagacaacatttaactggggctggcttacaggttcagatattcagtccattatcatgaaggtgggagcatggcagcatccaggcaggcatggtgcaggagctgagagttctacatcttcatctgaggactgctagaagaagactcacttccaggcagctaggatgagggtcttatagcccacacccacattgacacacctactccaacaaggccacacctcctaatgctgccacaccctgggccaagcaattacaaaccatcacaGGGTCCTTAAAAAAAAATCTAAGTTTCTTGTTCAGGAGTTTCACAGAAGTGCATCAAGGGACACAAGATATCTCAGACAGAG-GAGTTGCAACACAAGAGGAAAAATGCATGTGCTACTGTGCCCATATTGGCATCAGTATTAATGACCTCTGGAGATATCCATATGTAGCTAAAAGTATATATGCACAAATCCTGATCTAGTCTGATGACTTCGTTATTCTAGAGGAAGAGACAATTTTG-----TAGAAAAAGATAAAGAGACCTGATTATTATCACACAGCAAG---AGGGT-------ATGAACCAAGGAGCTGAACT-CAGTCCTCTGTGCAGACTGCTGGTCCAGCATTTGACCCGTTGTTTCCCTTAGATTCTCCAATGTTCAAGAAGAGGGACTCTTGGATGTCCCCGTGGGCATTCCTGGTGAGGGATCCTCCTGGCACAGAG--GTTGCCTGCTGAAGAACTTGTCTAAAAAAAGCaaaacaaacaaaaaaaaaaaaacaaaaacaaaaatacaaaacaGAGTTAATGGTCTAGGGCCAAACA--GCATGGATCTCTTATCTGTCCTTCCCTCCCCACCTGGTTCTCATACCCAGAC-TGCAAAATGAGCTGGCAGGAGTTATGGACTATTAAATAATGTAGGTGTTTTTCCTAAAT-----------AACTGTTTCCTCAGTGCCTAAGTGTT-TTCTAATGTGCTCTCTGTCAGCCGCCCAGAGGACTCAGAGGTAAATGGTTTCTTCTCTGGAGACAGGGAGAGAGCTC
s HiC_scaffold_1 115874611 2517 - 233722169 GACCTTGTCTGCCTCTAAGCCTGGCTGACTCCTACTCACCCTTTCAGATTTTAACCTACTTAACCTTCATCTAAATTGCCATCTCTTTAGAGAATGCTTTCCTGACCCCTTAATCCAAATCATatccttttctcattctcttccagagcaacttcttcttttcctttgtag-----TGTTATAATTGTTATTTAACATACTACTCAAGTATTTACTTAATATCTGTTTATCCTACCACACTGTAAATTCCAAGAAGGCAAGAATCTTGTCTGTTTTGCTT-----------------------------------------------------------------------------------------------------------------------------------ACTGGCAATAAAAAGTTCTCAGCATATGGTTAGTGAAAACAGACATGTAGCTGTTGAATGGATTATTAGTTCCTGTACCTTTTGTCTCTGACATCTGCCCCCAGACTTATCACAAATTCTAGGCttatacttcttcttttatgcaGAGGCATATTAGCAGCTCTATCTATATTT-AGTTGTTCCCAACCTAATCAGATACAGTTATTCTCAAATTcacttatccatccatccattca----cttaGCCATTATTTACCATGTACCCTCTCATTATAAGGCATCATGCCAGGAACTATATAagattaaa--atgaatataaaataaagttcTTATCCCAAAGACATTTACAACTTGGAAGAATATTTAAGAAACTATCAGACAGTTGTAG-AAAAAAATCGGTGCTGTATGCCACAAT--------CCTTGTCATTGGTGATGGAAGTGCAAAAGAGGTAAAAATATT---TCCAACTAGAGGTTTTAGGAAAggtttcaaagagaagatagCATCTGA----ACATTTG----------GGGATTTAGACAGCCAGAAATGGTATAAGAGGCATTCCAGatgaagaaacagttcatagaagcagaaaaattcagggagtGTTGAGGGGGTCCATGAGTGGTTACTTGTAGGGGAACAGAGGTGCCATAGATGGGGA-----CATGTgatattttaatctttatattttgatatttaatagtGAGTTAGCTGTGATAATTTGACAAAGGAATA-AAGTAAAAGTTAGATGGAAACTTTGGAAAGACTAGCATatctgtatgatttttaaattaggtGTATTTTCCTTATTCGATTAAGAGATAATCA--TACTAAACAGGAA--CAGTAAAACTGTTGGGGTAAGTATTTGTGTGATCTGGAGGATTACATAAATGATTTCATGCTCTTGGACACAGTTTGAAAACCACCAAATCATAATCAgaatagtctttttaaatttgatttttgattttaaaagatgaagagGACAGCCTATGCTAGGACTGAGTTGGTGTACTCTAATTTCTTCTGAAGGGAATCCTTGTAGTGGAAATGAACATCGCTTTCAAAC-TGGAATACTGATTTAGGGACATTAACAGAATCAAGTC--AATTATGATGGCCATTCTCATTTTCAGGCCAAAAGGCCCCTAATTGTACAGCTGTGGTGTATTAGTTCACGCTGATATATCCAAATACTAGATTTGGGAGCAtatataacagaaatttattttcac-agttctgaaggctggaagtccaagatccagATGCTGGCTTATTTGGTTCCTGGTAAAGGGCTCAATTTCTGGCGTAT-GATAGCTGTCTTTCCATT--GTCTTTACAGGGCCTTTTCTCAGTGTGTGCACATGGA---AGATCtgtc-cctcttccttttcttattaGGCCTCCAATCTTATTAGATTAGGACTCTACCTTATGAGCTCTTTTAAGCATTAATTCCTAAAAAGACTATCTCAAATTACAATCACTGTGGACTTTACGGCTTCAACGTAAGAAATTAGGGTATGCAACTCAGTC-------CTAGCATAGGCTGTCCCCCTCA--------------------------TCCTTTAAAATCAA------------------------------------AGACTATTCTGAT--------------------------------------TATGATTTGATGGTTTTCCAACT----------------------------GTTTCCAAG-----AGCATGAA-----------------------------------------------------------------ACACCCCAGAT--AGTGATCTC--------------TTCTGGAGAA-------------CTCACTCAAGAG---------------------------------------CAGAGTGAGCTGGA---------------------CTCTTCTTTCCTGGTGTTGGC--CAGGATTATAGA---CTGGAAACATGCAT-------------------TGGGAAACCTTCCATTTATTTTGATTACTTCATTGTATCAGGGAAAGAGAGGTTTTTGAGATTTGGAA----ACAAAGAGTCTTTCTCAGGGTCACACATTGAGGTCAGAGTAAATTTGATCAGCCAATGAGCAGAATTACAATTTTGTATACAGACTGCTAAACTGGTATTTAATTCATTGTTGTCCTTAGATTTCACCAGCTCTAGGACAGAGAGGTCCTGGATGT---AGTGTGTGTGACTAATAGATGGACTTCCAGGCAAAGAGGTGTTTCTTCTTGAAGATCTTGTCCAGATGAAT---------------------------------AATGTATGAC-----------TTGTAGGTCAAACAGGGCACTGATCGTtcatctgcttttcctttttcacCC-GTTCATACACCCAGACTTGTATAATGAGTTGGCAGGAGTTGTGGGCtattaaataatatagatatttttCCTAAATAATACCTAGAAAATTATATCACAAATGCTTAAGTGTTGTTCTAATGT----TCTGTCATCCTCCTAAAGGGTTTGGAGGTAAATGGTTTCCCCTCCAGAGATAAAGAGATAGATC

a score=19520
s chr3           105264760 784 + 160039680 CCTGAAGTAAGGGCCCTTTT-GTGTCCTTTAACCAC--AAACATAGC-------TTCTCATCTGCATGAAGACTCAGGACATCCTGATGGTCAAATGATTTTCCTTGGACCATTTCCCTTCCTCTCCTCCCTCATCACCCTCCAGGTTGCAGCTTAAATGTTTTGCAGCTTAAACGTTTTCTTTTCTCCTCAAAGGCATTTCTTCATCATTGTCTCCTTCAGAGTTATTCTCAACAC-ATATCTTCTTTC--CTTCAGAGCACTGAACCCAG-GTATATTGTATGTATAGTTTACATGTTCAATGCATGCATCTTCTG-ATTATAAGCTCTACCTATAAGTCATGCATGCATATCAGTGTGCTATGAGTGCCTGATCTGTACCC----------------------------ATTGAGTAAGTGAATGGCTTGTTTCCACCAATATGGAAGCTATGTTCCATTTTTTCTtttatttatttatttatctatttatttatttGGAAAAATTATCTGTGTCTTCATTTTGCACTCAATAGCCTTGCTAGCTGTGAATTTACAACCTAGAGTCAGGAAAATGAAGGACTGTGAGGTGTGTGGCTAGTCCATAGCTGACCAATAAAAGATCAAATTCTAGAATGGAACCTCCTATGAGATGTTCACTCACTTAAT-CTCCAGCACACATTTATTGACTA-----TCCTCCTCCTACTCGAGTTGTAAAAGCACAAGGGCACACCATGAGAAAGATGCTCTCTGTGATGACTGAGCATACAGAAAAAAAAAAAAAAAAACTAGACAAAGTTGTTGAAAGAAGAAGCAGAATGGTGAGCT
s HiC_scaffold_1 115877183 748 - 233722169 CCTAGAGGAAGGGCCCTTTCAGAGTCCCTTATCCATGGAGACACAGCAAAATATTTCACTGCTGCTTTCAAATTCAGGCCCCACAGATGGCCAGATGGTTTCCCCCGGAC-ATCTCCCTTTCACTCTTCACCCTGCGTCCATCAGACTGCAGCTGAGATGTTGTG--------------TCTTCTTGTTAGAAGGGCATTTCCTGACCACCATCTACC-CATTGTTATTGCCAACATTGCACTTTCCTTCTGCTTCAGAGCACTTAATCcagcatttaataaaattat-gtatttatgtttGATGT-TGTTTCTCCCATATCCTAAGCTCTGCTCAGAAGTGATGC-TAAATATCAGTATATTGTGAGTGCCTCATACATATCTTGCATATTGGAGGCATTCGGTgaattttaatgaatgaatgagtggttTATTTTCACTAATATGAAAGTTTTGTT----------------------------------------GTGGATCTACCATCTATGTCTTCATGTTACATTTAATAATCTTAGTAGCTGTAGATTTGCACACTAGAGccaaaaaaatgaagttatatgAGAAGTGAGTTTGGTCTATAATTGACCAATGAAAGATCAAATCCTGGAATGGAAATTCCTGTGATAAATTTATTCATTAAGtattttgataaatgtttattgaCCAGGTACTACATCACTTACATGA---------------------AATAAGATAGAAATAATCTCC----TCAtggagtaaaaaggaaaaaataaacaaaaacaag-cacaGTTATTGAGAGAATAAGCAGCATACTGAGCT

a score=83052
s chr3           105266570 2737 + 160039680 acCATGAtaataattttggcctttatcataaggtcaatgagatgccaaaggaagtttttttttttaaatagaaaaaagtgacataatctggttaatgttttggtaagattgctgcatcagagaagggcaagagagaaccaaagtgctgagagagtcaattataatagtcaaagaacgaagagacagggccttgaccttgagtggtggcagtgggaataaagagaaggggacgcttgagatttatttcaaggtagagttgacaggtctcagtgatggatggagtgtaaagagtgagggagagggagaaattgagaatgactATAG-ATGACAAATGGTCCTTTCCTTGAAGTCCTGCATCTTCTCAATTTGCTACAGACTTGAACCATTCTGC--CTTGGTATTGCTAAGCTGCCAAGGCTTTCATTATTCCTTCCTTGGCCTCACTTAGGCACCATACTTAGTATCCTAATTCAGTAATGTACAATCTGTATGGTTCATATCTTGATCTTCACAGCTCATTGAGCCTCTTTAAATGGTCTACAACACACATGAATTAAACATGACGGGAAGAGTGAGAGAGATCCTAACTGGCAGATATCCTGGCTCTCTTAGCTAAAGGTTCTAAGTAGAATCCAGATGGGGCTTATGCCTACATAATACTGATAATGCTGAAATATCTTTGCAGGTATTTGTAGGGAAGGTGGGGAAAGTAAAATGTTGTAAGGGTAGAAGGATGT-------GGGTAAGAGAGAGATAAAATCTGAAACATCAGGGACTGCCTAACCAAGCATCTCAACCAACTT-----------CAGATATCGTG-TCGGTGTTTTATTGAACAAGACTGCACGTATG----CAGTGATAAACATGCAAAGAAAGAGAAGGTTAGAGGGAGCTGGGTGAACAGAAGTGAGACTGCTGATGGAATATTATGGCTGGGGGTGTGAGttgagacaaagtctcactgtataacctatataaccatgggcacttgctatgtagaccagagtgtttttgaattgtggagattatcttccagagtgttgtggttacaggcatAGTAGCCCATAATGGGCAtcactgaattcttactatatatcatacagcaagttaagagtgtcaggaaatatatactgttcactacctatgaacacccctgtaaagatatctctccattatatgaaaagaaaacgatgtctcagtgaggtttaaatgactagtttaca-agtagtaactggtag---agcaaagatttcaacccagattagcatgatggcaaaacctgcacacttaattttaccccactgcctttttTAAAGCTGGGAAGGGTTCCAGTGAAGGCAGAGGAGA---CAGATGCAATGAATGAG----GGGTTGCCTAAGAGGACAAGTACACTGCATGCTGGGAAACACTAGTTGACTAAGATGAAGGGGAATCTAACCTGAA-GGGAAAAAAGTATATTAGTATATGACACTAGTGAATGAGGCGTTGTGAAATTTCTAGAGATGAATATAGTGTGTTAGCAGCTTCCCACTCTATTTCCCTGCTGACTGGAGTCTCATAACGTGTGTCTTTATTGCTGTTTTGGCTCCCAGTCATGAAAGTCTCTAACCTGAGATGAGCCCACACCT-----TTTCTCTGACTCAGATCATCATCCATCT------GGGATGGAGCAG---GGACAGCAGCA---GACTTGATCCCCGAATGAGTGA-ATTCTTGACTGAAACAAGAACCCAGGAGAACAACACAGTGTTACAATTAGCTGAGATTTATAACTTGACACAAATGCTGCTCATTTTGGATATTCAGTTTTTCCATTTTCGCTCCAGTTGTTTAAAGACATTCCACGAGCATCCTTGTGGCTCTGCATCCCAGGGGATATTCCAGGGAGAGACTGCTTTATGACTCAAAGAGAGAAGGGTAGAGTAAATGGAGGTGC--ATGCCTTCTACTTATGTCCCAAATTAACCGCTCTTACTCAGGGAATAAGTATG--TTGAGATTCAACTGAATGTCAGTTCACAGACTAGTATATATTAATGATTATTAGTACAATCAATATTGATGCACTCTATAGTG--TCAGATGGTAGGGCTCTACAGGATGGTTCTG------------GCTGTTTTCATGATGCTTAGAGAA-----------------ACTGAATGAGGAACTACAACGCAAATGCTCACTTACATATAGTATGGGAAAAAACAGATGTTTTAATATTCTCTTGTTTGAAGACCCTGGTTTGTGACTTTTAACAATTCTTTGACCACAGGCAAGTGAT---------------GTTTCAGTTTCCTCATCTACAAAAAGGAGACCCCTTAAtcattcactcattcactcatccattcattcatacatGTGGGCATTCTATAAACTCTTAGTGAACACTTCTGGGCTTACTTCAGCTTTAGCGACATGAGAAAGCATCTCTGGTGAAAGTG-------------------------CTTGCGCTGTTGCGATTGCCGGGTGAAGGTAGGTTGGGGAG--AAGAAGTGTTGCAGATGGAGGGGCAGCACATGCAGCACCTGTCATGTGGGCATGAGAATCACCCTGCCCTTCACAGTCCACAGGTGAAA---TATGAACTACGGAGGAAAGGCTGGGATGAT-TGTCTTCTGCCCTCAACAT-TACACGCATGATTTTAATTCTGATATAACAATCTCTGCCCTGAAGAATTTTCCTTTATGACCAGAGAGTTAATCAATCTCTGGAGTCTTTAGGAAAGAAT---AGAGAATGGATAGCAAAGTGTTAATGGGTGAGCCTTGGAAAGAACGTGTCATGATTTGGGTAAGGGGGTG
s HiC_scaffold_1 115878064 2591 - 233722169 ACTGTAATAACaagtttggattttattataagatcagtgaaa----aaa------------ttttaaacagtagAGATGGG----------------------------------ATCAGAGAAAGGCAAGATAGAATCAAAGTGACAAGTGCATCAATTCTAatactcaaaaggaaaggagatcACAGCTTGACCTTGGATGGTGACAGGGGGAATAAAGAAAAGTGGACACTTGAGATTTATTTGGAGGTGGAACTGATAGGTCTCAATGATGGATTAAATATAGAGGGTGAAGGAGAGGGACAAATTGAGAATGATTGTAGTATGACAAATGGTCCTTTTCTCGAAATCATGCATCTTTTCAATTTGATATTAACT-GACCCACTCTGCTGCCCATCATTA-TAAACCACTAAGGCTTTCACTGTTCCTTCCTTGGTGTCACTTAAACCCCACATTTAGCATCTTAATTCAATAATGTATGATCTGTATGGCTCATATCTTGATCTTCACAGCTCATTGAGCCTCTTTAAATGGTCTGCAACACACATGAATTAACCATGttggacaaagacaaagacagtcTAAGTGGCAGATATCCTTGGTCTCTCAGTCAAGTATTCTGAACAGAATCTAGA-GAAGTTTATTACTACAAGGTGATGCTAATGGC-CAGTGtctttgcatgtatttttaaggaagacaaaggaaataaagtatCTTGAAGGTGGAAGGATGTGGGGtggggggaagagagagagaaaatctgAAATATCAAGGAATGCCCAATCAGACATCTTTTCTAACCTGGAAACTGAGATGGATGAAGTGATTAGAGTTATATTAAGCCAGACTGTGTGTATGGATATAGTTAAATTCTCAAAGAGAAAGGGCAAGATAGAGGGAGTTGAGTAAGGAGAAGTGAGACTAGTAATA-----------------------------------------------------------------------------------------------------------------AGAATAATGTGATTAT----------------------CGTTACTGAATTTTTACTACTTGTCATGCATTATGCTAAGCCCTTCTGGTAATATATACTATTAAATAC-----AGCA------------------TCTATTTTATG----GAAAACTGAGACTCGAGGTAGTGTAGGTAACCTGTTTACATACAAATAGCTGGTAGCAAAATAAGGATTTAAAGCCAGATTAATGCAACTGAAAAGCTTGTGCATATAACTacacttcatttcc-tttttaaaactgtgaaGGACTAGATAGAAGGCAAAGGAGAAATCAAatagaaagaaggagagaaagagagcctAGAAGGacaaatatatttgatatttcaAAAGAGTAGTTGACTAAAATGAAGGGGAATCTAACCTGAAGGGGGAAAAAGTGTATTAGTATATGACATGAGT---------CTTATGAAATTGCTAGAGATGAATATG--GTGTTGGCAGCCTCCTGCCCTATTTCCCTGCTGGCTATAGATTCATAATTTCTATCTTTATTGCTGTTTCTGCTCCAGGCCATGAAACTCTCTACTTTAAGATGAACCAACTCTTCCTTACTTCTCTGATTCAAACAAAAACCCATCCCAGAAATGGAGGGACCAGGTAGGAGAGCTGCACAGAAGGTGATTCCTGAGTGAAGGCTATTCATGCCTGATAAAAGACCCCAAAGGAACAGGACTGCACTACAATTAGCTGAGATTTATAACTTGGTACAAAACCCACTCATGTTAGATATTCAGTTTCCCTGTTCTTGCTCCAAGTATTCAAAAAAATTCTCCAAGCATCCTTGTCAGTATTCATCCCAGGAGACATACCAGGAAAAGGCTGATTTAGTACTCAGGGAAAGAGAACTTGAGCAAGTGAAGGCTCATATGCTCTGTGTCTATGTCCTGAGTTCATCACTCTTAGTCTATTAATAAGTATGCATTAAGACCAGACTAGATGGCAATGTATTGACTAGCATATA-TAGCCTGTGTTGTAACAGTTAATACTAATGTACCATACCTTGGACTAGTCAGCAGAGCCACACAGGGGAAATTTGATAGATATTCACACTGTTCTCATAAAGCTTACAGAATACTGAGGTAGATACATATTGAATGAGGA---ATGATGCCAAGGTGCATT----TGTAGCacaagagaaa-------tataaatattctagCATTAGATAACTTCAGCTTGTGGC--ATAGTAACTTTTTGATCATGAACAAAGGATTTATAGCATCAGTaagccttggtttcctcatcttcaaaataaagaacattcattcattcattcattcattcattcattca---aaacatGCTG-------ATAGA------------ACCTCTAAAATTATGTTAGCTTGAGTGACAAGAGTAAGCCTCTCTGG---AAGTGAGGTGCTGTTTAAGCTGAGATCTGACTGATGCGGAGGCATTGGCTGTATGATG--AGTTTGAGGGGGTGGGAGGTTTTCCAGATGGAGAAACAGTGTTCACAG--------AGGTGGGAATGTTTATAGCCATGTCCTCTGCAGCCTACTGGTAGAACCTTGTGAAGTACTAATTCAAGGCTGTTTTAACATGAACTTTGTCCTCAGTATATCTAGATATAGCTATTATTTCGATGCAAAAATCCCTACTTTTGTGGACCTCCTTTAGTAATTGGAAAGGTAACACA----CAGGGTCTTCAGAGAAAAATACAAGACAATGGATAGCAAAATGCCAGGTGGTGAGGCTCAGAGACAATACACCATGG---GAGTCTGGGGATG

a score=45103
s chr3           105270342 4153 + 160039680 [encoded data, 4702 characters]
s HiC_scaffold_1 115880627 3856 - 233722169 [encoded data, 4702 characters]

a score=69669
s chr3           105274751 3821 + 160039680 [encoded data, 4176 characters]
s HiC_scaffold_1 115888768 3793 - 233722169 [encoded data, 4176 characters]

a score=27279
s chr3           105280747 962 + 160039680 GATTTTCAGTATAAAAGGGACTGAAAGAAGAGGTACAGGTGTTTAGAGAGGATGACCAGGACTTGTTATTTTTGAGAAAACATGTATATTTGGTATCACACATACTGCTTAGGCATGTT-TGAATACTTGTAAGGAGAGGACTCCAAGGCCCACTGTTGCTAGA-TCTTTCTTATGCAGTCATTAATACTGC--ATGGCTCGTACACTCATTACCACAAGGCCCGAAGCGACTTGTCTCCAGGCAAGCCTCTGCTTTGCTACTCTCCCTATGGAGACCTTTACTTCCTGTGACTGGAGGCTGAAGCTGGGAATAGAGGCTTGAGGC-TTCATGGCAGCCCCGAGAGATGTGTCTAGAAGCTTGCAGTTGGTATGTCAGGGGGAAAAAAAGGCCTTTGTTAAGCTCAGCCTGGCACTCA-GGAGGCAGAGAGGAAGGCGTCTGCCAAAACAG--AGAATAACAATGACTCATTTCTACAGTGACACAGCTGTCACAGTGTGTGCACCAGGCTCATCTCCTCTAGTCTTCATGACACCCTGAGG-ATCAGGCAGGGCGGAGAGCACCTTAAAGAACCTGAAGCTGATTGAGGTTCAGCCCTCTAAGGCCGTTTGGCTGGAAGATGTTGAACCTGGTACACAAACTC----------AGACCCAGTCTATGTTTCTTGCCATACTATCTCTAGAGAAGTCTCTACTGCCCTGTGTCTCTAGAGAAGTCACAAGCACCAACAGTTCCCACTCCACAGGG----GAAATAGTTTGGACTTGGAGGGCATTCCCAACCATATAGTTATGGTATAGTTTCAATCGCAAATAGCAATTTCTTTTCA-AGTGCTGGTCAGATGTA-TGATAGTTCTAAGCTTTGGAATCTAGCCCTCATGCCATTACATCTATGAATCTTTCCTTGTTGATCTTTGCCTCTTCCCCGTGTTTGATGGCTCCT--TCACTATGTGGTTCCCACATAGAACATTACCCCA
s HiC_scaffold_1 115894021 924 - 233722169 GACTTTCAGAATAA-------TCTGAGCAGGAGTGCAGGTGGTTACAGAAGTTGAacaagtattattttaatttaaaaacaccaaatgtttaattttacatACATTGCTTAGTCATGTTGCTGGGACTTACAAGGAGAAGACTCTGCTTGTAACCATTTCCAGAGTCCTTTTCAGATGATTATTAATAGTGCTAAT------TATGCGCATTACCTCAAAACCCTAAGCAACTTCTCTCCCATTGAGTGTCTACTTGGCTGCTCTCCCCATGGATACTCTTGTTTCTTGAGACTGTAGCTTGCAGATGAGAACAGATGCTTGGGGCTTTCCTGGCAGCCTCAAGGGAACTGTCTGGAAGCTGAGAATTTGTGTGTCAGAT---AAGGGAGCCCTTAGTTAAGCTCAGCCTGACACTCAGGGAGGCAGAGTGGAAGGGTTCTgccagaacaggaaaaaagacaaTGACTCAATTCTACAGTAACACAGCTGACAGAGTGT-TCAACCCAGTTTATCTCCTCAGGCCTTTGTGACAACCTGAGGAAGCAGGCCGGGGGGATAACACCTTGATAAAACTAGGGCTGTGCAAGGC----CACTGTGAGGCCATGCACCTACAAAATGTTGAAGCTAGTACACAAACTCAGAGCATCTAAGACCTGGTGTGTGTGCTTTTCTG------------------CTGAACTTCCATGCATCTCTAGAGAAACCATGAATATTGACAGTTGTGCATCTCAAGAGTGCAGAAATTATCCAGATTTAGGGAGCTTTCCTACCC---------------AGATTCAACTTCGTATGGCCATTTATTTTTAGAACACTGAGAGGATGCACTTTTAGTGTTAAGGATCACAGTCTGG------TGTCACTATCTCTACAAAATTCTCCTTCTTGGCCTCTACCTCTCACCTGGGTATAGTTGTCTCTTCTCATAGTATAGGTC-----TAAAACagttcccca

a score=12069
s chr3           105281699 590 + 160039680 CATTACCCCATTACAGTACTTCCAGCTTGTTGGCTTACTTACTACTT---GTTTCCTGGGTAGCAGCCAGTAAGTCAGTGCCTACTTTGGGTAGAGTTACACCCGTTGTCTCTCCTTGGCACTGAAAACCATGCTTAGAACATAGTGGC---TGCAGTTGGAACAGAATGAAATTTAGCCGAACAGTAAAGGACAGCTCTGTGTGC-CATG----AGTCC--TGTCTCTGCTTGGAGTTAGCTCCTCTCACTCCCACTAGACATCTCTGTGCTGCCAACTCTCCACTCAGCAAAGGTTGGCTGCT-----------------ATTCAAGATCCTTCCCT---AGTTTGT-----TTGTATGTCAATCAATGGATGCTGCCAATGTAGAATTCCTAACATGGA-----GAATCCTTCCGATGGAAGTGGTGAGGTGTGCTAAGGAAGGAAGGAAGGC-TAATGTTCCTATGATTTACCCATTCCAATTCTGTGTGGGCAGCTGAAAGGAGGGAGGTGTTCTCGAGG------TCTCACCAGTAGGA-----------GCACGTGAGGGGTGTGTGTGTGCACGTGCATGTACATGCATGTATTTATGGGCTTACACATCTGTGTCCTGGAATCCTGGAG----CTTCTAGAATGAG
s HiC_scaffold_1 115895332 630 - 233722169 CATACCTTTACTATAGCACTTAtgatttgttg-tttatttatcaCTTTTTGTTTACTGGGTGACAGCTACTAAGCTTTTAGCTACTTGGATATGAATCATAATCATTGTTTCTCTTTGGTGATTAAAACAATACCTAGAATGTAGTTGACAGTACAACTGGAAGAGAATGAAATTAAGCCAGATGGTAAAGGCTAAATGTGAATCCTCATGTTTTAGTTCTTTGTCTCTCCATAAGTTTAGTCCCTTTCTTTTCTGCTTGATATGTTTATGCATCTTACTTTCCACCTAGAGAGGATCTGTGGTTCTCAGAGTGAAGGATAAATGCGAGATCTTTCCTTGGGAGTTGGTGGGAGGTACATTTCAATTAGTAGACGCTGCCAGTGTAG--TTTCTAGCAGTGAAACTTGAACCTTGGTGGTAGCAGCTAT-AGTGGTACTCTGGA--GAAGGGAGGCTTGATGTTTATCTGATATA-CAGCTCCA-------GTGAGAAGT---------GGAGGTGTCTCTGATGTTGGTTTCTTACCTGTAGCATTGTGAACAATGCATCAGAATatgatgtgtgtgcatgcatgtgtgcatgtgtgtgttcacaAGTGTGTGTACTTGTGTAT--GTACTCTAGAGCTAACTTCTagaatgag

a score=25627
s chr3           105283580 1247 + 160039680 AAACTTCTGAGGACAGAATCT-ACTTCTAATCATCACTGGTTCTCTTCACATATATT-TGCAGTGCTTTACCCATGACCTACAGAAACTAATCTCTCCCTGCACTTGCTGCCTCTCTTCTTGcctcttcctctttcccttccctctcttttcttctccct---tcccctctccccttctccctccctctccctcCTTTTTCActctccttccttccttccttgcttccttcctttcttcatttctctctctcccttccttccttccttccttccttcctttctttctttctttttttctttctttctttctttctctctctctgtctctctgtctctgtctctctctgtctctgtctctctgtctctgtctctgtctctctgtctctgtctctgtctctgtctctctctctctctctctctctctctcactctctctctcttctttttttttctttctttgctggagacagagctaagggcttcatgcttgccaggcaag-agctccaccactaagcttcaccttcagcctcATATACACTTCTTGAACATAGAAAAAATAAACTTAGTAAAAGAAGTACACC-TACAATCCCTACCTTCAATGTGCTTACAGTCTGTTAAGAAAAAATATTTAAAAAGCAAATAACTTTCCAAAGCCAACTT-------TTCCATTTGGTTCTTACAAAACATCTGTACAATTACAACAGAAAATACAATGCATTCCATTTAAGGATGTACATTATTTCAGGAGAAAAGAACCCCAGCCTTACATTCTGCCAATCACTGAGT----GTAGCATTCCAGGCAGCAATGAATTGTCACTTCATTTTGTTCTTTCTTACTCAGAGTGCAATGTAGTTTAATGATAGTAGTAGGTACTATTCATTGACTGCCCACTTTGTCATAGGCAAAGTCCCTTCATCTACTCTTTGTATGACTCTCAGTGCTCACCAGAAGTCTGTTGATTATGGCTTTATTATCTTATATAAGAGATGAGGAACCAGGGT-GGGGAAGAATAAACAA-TCTGATAGGTGAGGTCGGTTGCTGACTTGCTAGGGTTTGAGGATCATCTGTTTAACAACAGAAGATGGGCTTTGAATAC-TTTGCCTAAGATTCTAATGGTCTCTGGGGATGTCCCACAttagattcctgtctcaatacttgctagctgtgccattt-gaaaccccctccctgccgaatttcaactttctgatttacagagcaaaaactataaccactactttgaaaggctgttgggag
s HiC_scaffold_1 115896558 1079 - 233722169 AAGCTCTTGAGTGCAGAAACTGACTTCTAATCATCTCTACCTTCTTACAAATACCTCATCCAATACCTTACCCA-------CAGG-----------TCCTGCGTTTCCTGCTccact------ctcctcccctctctcctccctctccccctgtTCCCCTGACTttgctgtcctctcctctccttctctcccctccccttccctcctcttccctgct------ctcctctcctctcctc-tttccccttCTGCTCCCCTCCCATTCCATTTcctattccttctttccttccttttttctcttattctttttttctttccttc-----------------------------------------------------------------------------------------------ctttttctcttccttcctcccttctcctttcttttcagt----gctggagattaaacccaaggcctcacacatgctaggcaagcagct--GTCACTAATCTACATTCTCAGAGCAatacatattt-ttgaat---gaataaataaa-ttaatgagtaAAGTACAAGGTATGTTCTCTATCTCTAGGGAGTATACActgttttaaggaaaaaaatt-----aacaaatgactTAT--AAGATaacttgaaattttataattctgttcttctgcaatatttataattatacagCCCAGAAAATAACACATTCCATGTAAGTATATAAATTACCACAGGAGAGAAGAAACTCAGGTTTA------GCCAATTATTGAGTATATGCAGCGTCCCAGCAACTTCTAAAATATTACCTTATTTCATTGTTTCTAATTCAGAATACAGTACAGTGTCATGATAATAGTAGATAGTGTTTTCTGAGTGCTTGTTTTGTGGCAGGAAATATACTTATCTTTAATCTCTG---------CAGT---------AAGCCCACTACCTATAATATTATCATCCTGTATTagagaggaggaaactgagcaGAGGGAGAAGAAACACTTTTTCCAAGAGGGATGGGCTGTT-ACTGGCTACA-----------------TTGACATGAATAGCTGGCTGTTTAATTCATTTGCCTGGGCTGCGTGTGGACCTAGGGCATAT----CATCTGTTTCCTCTTCCAGTGCTTGCTAGATATGTGATTTGGGAATCCCATTCTTCCTGTATGTCAACTCTCTGGTTCACAAAATAGAAAACGTAACCACTACCTTGAAAAATTAttggagg

a score=30850
s chr3           105285678 2383 + 160039680 TTCATAATTTAAAAACAGGTAATTTAAAAAAAATGGACCAGCAAGTAACCACTTGTTTTTCAAACCTG--CTGTTGGGTCACCATCT-CTGCCCCTAGCCAGGCTCTATATAGTTTTtcctggtcactttcagatattagaagttttacttacaggtattaaaaaggccaggtggatctaaatcaatactttcatttcacatccaatttaagcttttcactcttt---ccagctcaggctctgctggtgctcagtaacctgctgtgggggtaaacgtggttgttaatttctttaaactcccttcccatcccgtcttggctacgagcaactgcctggagctcctacagggctgaggtggg----gaaaaaaaagagaaggaCTTGTC----------------------------------CAGGTGCCGAATTTCTGCCGCTTTCCCTCATGAAATGCTTTTGTGGGCTTTAAAAAAGTTCTTTCTCATGTATTTCCACCACTGG-GTCTCTGTATGACCTCTGATAATGGTCCCCAACTTCCCTCTTCAGGACCTCCTCTCAGCTTCTTTGCTGA-----------------TAGCAGCCTCCTTGGGCTG----TCCTCAAGATAACATTCACGGAGCTCCTGTTCAAAGAGCCGTTAATCCTAGGGAAA-------AGGCTTGAGACACTTGGGAGGCTCTGGCTAGCGACAACGCTTCCATCCTTCTGACTCTCTGA---CCTCTCAGT-CCCTAGGCACAGCATATCTCCAGTGACACTATCTCCGCTTTGCTCCAATGCTGTAGAAGATTTCACTTTCTTCTTTACA--------------TCAATATGCACTT-TCCCTAAGAGGGAAGAGAGGGACATTTGGGCCCTGGCCCAAATCTTGCGTCTTGTAGAGCAAACAAATCCCAGTGTATCCTACGATCGAA-CACCTTCTTGATTAATCTCTGGTCCTCCTTCACAAGTGAGATCGAGCTGGTTGCCAGGGTTAGGGGCATGAATAGAA---TTTTTTTTCCTACTATACCCTGCATATGAGATACTTCTAAGCAC-CTTTAGAAACAAAGCATG--CTTAGCCATTGTTTTTCTTGGCT--------------CAAATTCTGAGACCATAGTCATATTCTAATTGGGAGATATCACAGTGATTGCCCCACACACGTACACAACTCTAACCACAGTGACAATGTACACAGTTTTAGAACTCAGTCAATGGAgggactggagcgagggctcggtagttaagaatatgtactacttttgcagaggactggagttcagttcccagatcccacacctgtggctcacacccctttacctccagctccaggggatctaatgacctcttcttgactccgtgggcatctgtccttgcatgtacacatctacacacaggcacacataaTTTCT---------ATTAAT-------CTTTAAGAAAATAAAAATGAACAAAAATCAAGTGACAGAAAAGGGCATTTGCTTCCTCTGTTCATGTTGGATCTATGCATAATttcccaggagccaccattttctaagcctgtcttctgtttattttaagcgttccttcctactctctgaatgacatacatgtataa----tactggattctaaaatgttggctcctgactgttgac-ttctaatgctgaagcagacaacttagattcttcaatgcctacttttctccaccttccacatcaggaatatttcctttccctccttcccaatagagtcattg-agtggct-----------------tttgattaaatagtgtatctattgttgtcactaggtgaatgttaacag---------------cttagctaagatcacacaatgattatttttcctgttcttaaatatattttcctttggatcaatcttttc---------tggtttcagttgtttgtttaa----tatggaacataaaaaattcacct--tcagactcctaaacaaaaccgtacaactgttctcagtacagatgcacacataagacaatctctctgtgct-agtgccatttctaggtcaagtatctctacaagatccctcattcagtttgagctccttggagtctgctctcttgagtcca-------gtgcatggcct----------tggcctcagctggtcccttatcacaaccc-------aagaaacca--cgtct-------------------ctcagccgtgttagag-----tcctgtttg---------------------ctgaaatgacaatgttttcttttttTAAATTTATATTTT---------------------------GATTACAAATTTACTCGTTGT--------TTCTCTTTCACTCTGGTGGAGGTTTTTATGAAAAGTTGATGGTTGGTGGA--CTTTAAGAATCCACTGAAAATGTCAGAGAAAGGGGGAagtttggctaggaattgaattctaagttcagagtgacttcttcctttcagaggtttagtagtattagtttattgtctttagctgtgatatttctgat-ccaaatctaatgccatt-tgaCatataatatttaatttattt-----------------ttCTTTATTCATGTTGCTC-AAAACTTTACAATC--ATATCTTGATATGGGTTTTTAAAAAATA
s HiC_scaffold_1 115897692 2373 - 233722169 TCCTTAGTAAAGAATCAGGTAACTTTTGAAAAATGGACCAGCAAGTAACCACTTGTCCCTCACATCTGCCCTCTTGTGTCACTGTTTCCTGCCCATGGCCAGATTCTATA-GGTTTTTA--AGTCATTTTCAGATATTAGAAGTTTTGCTTACAGGTATTAAAAAGGCCAGGTGAATCTAAATCAATACTTTCATTTCACATCCAATttaagcttttctctttttttcctgattCAGGCCTTAGTCATGCTTGATAA-CTGCTGTGGGGAGATG-GTGGTGATTAATTTCTTTAAGCTCCCTATTCTACC--------CTGCTGGCATCTGCCTGGGGCTTCTGCAGGGCTGGGATGGGAGGTGAAATGAGAGGGAAGCACAAATCCACTCCATAGACACTGCTGATTTATAAAAGGACTCAGGTGCCCAGAAGCTGGCTCTCTCCCTTATGGGGACCTCTTATGGGTTGTTTAATGGATTCTCCCAGT---TTCTCAACACTGGAGTCTTTGCATGGCTTTTGGTGATATTTCCTAAGATTCTTCCGCAGGGTAACTCTGTAGCTTTTCTTCTGAAGTCCCCTCATTCTGGGGGGCAGCTCACTGGGGCAGGCCCCCCTCAAAAAAACACTCATCTGGCTCCTGTGATGATGCCCACTTGTTCCAGGGAAAGCTCCACAGGCC--AAGTACATAGCA-----CGGCTAGTG--GGTGGCTCCAACC----AGGTCTATGAGACCTTCTGAGTACACCAGGTGAAGA------CCAGAGCTACTCTCCGAGCTATGTGCCTAAGGAGCAGAA---CTCCTTTGTTTCTTTACAGACAGTCTGAACCTTCTAAAAGCGCTTGTCTCTCAGACTGAGGAGAAGGGCAG-------------CAATTAGTGCTTCTTCCTGAGCTGACAACTCCCAGTGCATCATTTCTCAGAATCACC--CTTAACTATCCTGTGG-CCTTACTCATGTATGGGATTGAGGTGAGTGGCAAGATGAGGGTCACAGGtggaaattctttatttcttagtAAATTCTGCAGATGAGATGTTTCCAAACACTCTTTTAAGACTGTGTAGGCACTTAGCCATCATTTGCCTCAGCTGTGGGGCCTCAACCCAAACTCCAAGACAACA-----------------AAACATGTCAGT--TTATCATAC--------------------------------TTCACAGTT------CTCAATCTGT--------------------------------------------------------------TACAGTTCCT--ATCCCtca----tagcacacacacacacacacaca-----------------------------------------------cacacacacacacacacacacacacacacacacaccttctcaTCAGAAAAGCaatgcacatatttttaaaagtcaagtagTATTACAAACTTAGTATCAGAAAAGAATATTTGCCTCTCCTATTTATCCC--AACTTTGTTCTATTTCCCAAAAGTTATCA-CTTCCAACTGTTTCTACTATTTATTTTGGCCAGTCCTTTTTTGT-TCTAAATAATACAGATGTATAGCAATTGCTGGA-TATAAAATTTTAGATAATCTATGTTGTCTTTCTCATGCAGAAGAGGAGAACTAAGATTGCTCACAGC---TGTCTCTCTACCCtcc----cagaaatattttttctcccaCCTTCTTAATATAGTTATTATAATGGTTAATCTTGACTTCCAACATCGGATTAAGAAGTGTCT-----------AGCAAATCAGTG-CAGCAGACTCCCGGATGTGTTCTTGGGTATTTCCATAGAAAGGTGCATTGGGAGGGTTCTAACTTCAT----CTGTGGATTAATCTGTTCATGAGATTATAATTTGATGTAACTATTGGAAGGTTATGGAA-ACAGGAGGTGGGCCTGGTTGG---CGGAGAGTAGATTGTG----------------AGAAGCGCGAAGAA-------TCTGGGCACTGAATAcactccctggctc-----------------cttcctttctgtctttccgccctgttctctgcttcctggctgccatgaagtggtGGGTGGCTTTGCTGCAGAATGTCATCATCTTCTGCCTCATCTCAGCCCTATGACAATGGAACCAGCCAACTGGGAACTGAAACATGAAACCTAAACCGTGATGAGgctttttcctttatgtttatgTTAGGTATTTTTTGCCTGACATAAACATGTTGCCTACTGTGGAAATTGTATCTTTCAGCTAAGTTAGAGTTCTCTTTCTAGGGTTggatatcttttccttttgtggtACATGTTTTTTCACTTTGGCGGCACTTCCTGTGAAAAGTTCATGGTAGATCAATGTTCTTAGATTATATT-AAGATGTCAGAGTAA-GAGAAAGTTTGGATGGCTATTGAATGCTA-----GAAATACCATTTTTCTCTCAGATATT-----------GCTTATTG------GCTGTAATATTTATGTTGATAAGTTTAATGCCATTCTGATGtct-atttttaatgtcttttattcCCCCTGAGGTTCTCTTTTATCCTTGTCATTTGGAAACTTCACAATCATATATCTTGAtatggttattttaaaatta

a score=33682
s chr3           105290362 1881 + 160039680 ATGGGTAATGATTTTTTAAAATGAGAACCTCAGTCTTCTACAGTCAACCttttattaattaattctaatatcaaatattatataattGTTGTATCAT----------GAAAGGAGACCCACATATCTATGAATG-------------AGTTTTGTCA-TTACCTGTTCCAACAGA--GAAGATTTTTTTTTTCCTGTTTGGGTATAGGGTTCTAGAAGGCATTCTGAGGTAGCAG--------CTAGGACTCCAAGTGTGTGCTGCATATAACTCTTTATCAGGGAAATGGGACGTGGAGTCAGGTAAGACTTCCCAGGAACAAAGAAGGTCAGTGAGTAAAGATGGGGAAGTGGAAAAGA-AGTGTATCCATCTAAGACCAATGGACAGCTTTTGCTGGCTAGCATTTGGGG--------------GAGCATGAAAAGTTACTCATGGAGGGCCTGCAAAGTCAG---GGCAACTGAGACTTTGTCCTACACATGGTGGTCATGAGAATGAGCAGTGAGTATGCCTCAGTTCCT--CAGTGCTATTGGGGGATTAGCCCAGAGGTCA----CAAGATCTACTGTCAAAGGAGGTAACTCTGAAAGCTGTGAGCAACATGAAGGATGTGGCAAAATATTGGGAGAGAAACTGAGGAGC-----------------------------------------------AGCTGGGTTGGAAGTCCAG-----------------------------------------AGGGTCAG-------------------------------TTGCCATG----------------------------------------ATTCCTGGGTCTGGATTTCCTATAACATCCTGTATATTATACTCTAAGTTTTAAGTTTATCTGAAAGCTTTCTGTGTGTGTGTGGCACAtgtt-ttattaaactctgagtcccctgaagtcagcacagagtttcacccatggtaagttctcagtaaatgtttgttgaatg-aatggaCAAGTAAGCCTAGGGAT------TTAA---GTGTTTGCTGGCT--CGTGGATGAGGCTCAGCAGCTTGTGAGCAGGGGCAGGGATAGCAGTCAGGGAGCCTGAAC----TCAAGAGTCAGGAGAGTGGTTCTGAGCACACCAAGCCTTAGGGGTGTAAGATATCAACGATGGCAGTGCACAGATAGA-----------------------------------------TGCAGACACTGGCTGCACATATCCACCAATGGTATGTATGA--CACATAAGAGGGGTATTTATGTTCCTTGTAGCATGAAGCTCATGACATCTATGGCAGGATGAAGGGTCCATTTTGCAATACCCATGTTTTTAGGGGTACTATTGGGTCTCTGGTCACACAGGATACTAAACCATAGAGTCACAAACCTATACATCCAGCTTCGCATTCAAGGCTGCTTCAGTCTCATCATACACATGCTCTCTAGACAcacgcatgcacacacaagacacacgcatgcacacacacgcacgtgtgcacgctcgcgtgcacacacacacacacaGAGATCATAGGTGAGCACAAACAAACCTTCACACACAGAAGTGCACACAGATATATAAACCCCTGG----GAAAAGTTTAACAATTTATTTTATGCAGGTCTAAAAAAAAAAATCAAACCAAAACAAAAAACCCATCTCTCAGGCTGTCAGACTGCATGAGCTGCTGTAGGAG--GAGGGGAAAGGACCAAAGCGTCTCCTTGACAGCTTCCATTAACTGAAATACGAGGTGAAAGAGAATGAAATAAAATTGGGAATGAGATGACAGGG-TTCTCTATCCGACAG-AAATGTTTGCAAGCCGCTGGCCTGATTG-TGTGCATTCATCACCCACTGCAGCCAGCACAGCCCCTCT-GTGGGTCCCTTCCTCACAGTCACTGGAGAGGCAATCTTTTTGGGGAAGCAGATGTCCCTGCCTCATCACTTCAGACAAGCAG-TTGTGCGGTAGATGAGCTTGGGACTCCCGGTGTGTTTGTCTTTCCAGCTCTTCACACTAAGGTCCACTCCC-----------TTTCCAGGTTCCACTTCCCAC--TCAGTCTCTACCTTCTATTTTCTGGGTCTTACTTTCCCATTCCCCAAAAGATCCT
s HiC_scaffold_1 115900616 2004 - 233722169 ATATGGAGTGACTTTT----GTGAGCACCATCATCTCTTCTGTCCATGCTTTCACTAGTT----CTGACAACAAAACTCccataattgttttctcttttccctggTAAGAAAGAGTTTCTTATGTCTGTGTGTGGTGAAGTCTGTTGAGTTTTCTTGGTCACCTGTTCCAACAGACAAAAGAAATGTCTTTCACACGTGGAGTATAGGCTTGTTGAAGGCATTCTAGAGTAGTGGAATCTTATTCAGGGCTCAAA-------CTATACACAAGGCTCTCTGGTGAAAATGGCATGTGGAGGTCATTAAGACTTGCTAGGCATGAGGAAGTACTGGGAGTAAAGATGGAGAAGTGGAAAgaacagtgaattca----agactgATGAGCAACTTTAATTGATTGATGCTTTGGGCACTTCAATATGCGAAGCAGAGAAAGTTG----TGCAGGGCCTTGAGTGCTAGTGAAGGAGTTGGGATTTTGTTCAATGCACAGTGG--AAGCATCTGAGAAATGA-------TCTGATCCTGTCAATGCTTTGAGAGGGTTAATCCAGTGGTCATGGGCAGGATGCGC-----AAGGAAGAAGCTCTAGAGTCTTTGAACAACTGGAGGAATATGGGAAATT--TGGAAGAGAAACTGGAGGTCCCAATTTGGAGAATTCCAAAATGAAGGGTTAAACTATTGCCAAGTATGACCAGGCCTGAAGATCAGCTAACACACATTCTTTTCATAAAGGCTTCTCTTTATCTTTAAGAGTCAGGTCAAGGATCACCTTCTCCCGAAAGCCTTCACTGCCATGCCTTCCCTAGCCAGGGACAGGCCTTTCTCTGCATGCCTTTATTGCTAGGCTGGAATTTACCACATTAATCCTTCTATTATACTCTAAGTTTTGAACTTGTCTGAAAGCTCCTTATTCACA---AGGTCTTGTTATTATTCAATTCTGTGTCCCAAGAAGTTAGCCTACAGGATGACCCACAATCAATGctca-caaatatttgttgaatatagTCAACAAATGTTTGTAGAGATGGCCCATTAAAATGTGTTTGTTGACTTTCTCTGGCAATGGTTAGCAGTCTGTGTGTAGAG--CAGAAGACCAGGCAGTGTACTTGGCCAAGATTAGGAGCTAACATAATGGTGTGGAGTA------GCACCAGAGGTCTATGATATTGAAAGTGGTATCACTGAAATAGAACCCACGGAAATCAAGCTGATCCAGAGGAACCATTCTTGGACACAGATAATAGTTATAATTATCTGCCAGGAGTGTATATTGATCACACa----ggatattt---ttctttacatcatgaGCCTCATGACAACCCACAGAGAAT--------TGTATTGCTATA-----------GATGATGCTATTGGAGTTCAAGTCATGTAGGACACTCAGTTA-GTAGTCA--AACCCATACA----GCCTTCCATTCAAGGCTGTTTTGACTTTGTTACACATGTGAGCTCCTGATACAT-------------------------------------------------------------CCACATAAACTCAGATCACAGGTGGGTCCAAGCAGACCTGGACTCACA-AACTATACA---ACAC-CAAGTCCCTGAAGCTGGATGctttaacaatttattttatgTGGCTCT-----------TCCAAC--------AAGTGATGTCTCTCAAGCTGTCAGAATGTATAAGCTGCTGTAAAAGCAGAGGGGGAGGGATCAAATAATCTCCTTGACAGCTCCCATTAAGTGAAATATGAGGTGAAACAGGATGAAATAAAATTGGGAATGAGATGACAGTGCTTTTCTACCTGATGGAAAATGTTTGAAAGCCATTGCTCTGATCACTGCCCATTCATCACCCACTGCAGCTGGTGCAGACCCTCTGGCAGGTCCCTTCCTCAAACTCACCAGGGAGACAATCATTTC-AAAAAGGAGATTCCTCTGCTAAGTCAGGTCAGAAAAGCAGTTTGTGTCATGATTGAAATGGGGGCTCATAGATTACT--GTTTTCCAACACCTAGCCCTGAATTCCATTCCAGTGTGCTCTTGTTCCTAGG--ACATTTCCTTTTGTCAGTTCTGATTTCCTACAGTC----TCTCCCTATCCCCTGCCTCCCATGATCCT

a score=42308
s chr3           105293041 2528 + 160039680 gtgtccagttctcagcacaTAGTGTTG-GTAGTAGGTC-----TATCTTTATCATCTTCATCTTATCC------TCCCAGCCCAGGTCAGTCAGACCTCTGCCCTCCTTACATAGCTATCTCTCCTTAGCTTCCCGCTTT-CCATCAAGAAAGAGAGGAAGTATACTGAGTATCTCAAGACTAACTAGGCTGTACAGGAAGGATATGTAGCTATGGACCCACTCATGGAACATAAGGAAGGATGAGAAGCTAGA-----AGCCTCTCT-------CTCTCTG-CAGTCTGGGCTATA--------CCTTCCCTCTGCC-----ACCTCCATTGCTGC-TGAAGACTATCTTTCC-ATCACAG-GTTAC----CAGGAATGGCCTCCAGCCCACACTCCCATTCTCCTCAGTGCTGATGCTTAAAACCAACGAATGCTAACTCTGGGTCTAAC-TAGAAGCCCGAGGCAAAGAAAATCTGATTAATGCCTCCTGGTCAGCCTTTGTTGACACTCCCCAC------AATCATTTGAAGAT-TATCTCCCTCTCCTCTCTGCTCTTATCCTTGGCTTCTC---------------CATTTCCACTCTTT-TGGTGACTATATTAATGATATCAATATAAAGAAAACAGCTCAGCCCTGTCTTCTAAGGTGAACACTGATAAA--------------TGGTTTACTTGATGTATCTT-----TGCCATTGGTTCCAGAGTGTACAAAACAAAGTGCATGAATGTTCTTCCTCTCACCTTCATCCCCATTGGTGTCTC----ATTAGATGGCACTCCAGTGCTCCCCATGTCA----------GGAGTGAGTGCTCTGTTATC-TCCTTCATATTGTCCTCCACTTCAGTCCCTCTATCTAGCCCATTATCAAATTTATGGATTTTCTTTCCTAAATCTCTCA-GAATCATTCTTCTTTTCTTTATCTTC-CTGGAACATCCCCACCCAAGTGAAAACTATTATCTTTTGCCTGGATTCTGTTATAGCTTCTTAA-CTTGTCTCTTCAGAGACATGTATGCTCTGTCTCTAATATTCTGGCCACTTTCTACATATTGGTCTAGAAGAAACCTTAAAAACAGAG---------------------------------------------------------CAAAACAT---------------CCCCCCCCACACA-------------------------------------------------------------------CACACAT--------CAAA----------CTAATC----AAAACCACACA-GCTGATA----------------------------------------------------AGATTTCTTAATTCCTAAGATTTCTTAAT-----TCCCCCGAGTTTAAACTGGAATTTGCAGTCTCTGTCAC----CCTTCACTAGCCTGC-TGTCCCCCCAGCCTTGCCTTTTGGCATGTTTTTCTTTTTCCCCACTTCTGTAAAACTGGCTTTAGTCAAAGTCACACAAGACACACCAAGCAGGAAAAAAAAATGTCTGGTTACCTACTCATGAAGG-GTACCACTAGGTTGC-----CAAGTGTTGATGACATGTGCTG----CTGCTCTCTGGATGTCTTGGCTAGATATTCTTAAAAGTATCAAACTTCCTCAAGTGCCAGATCTCTAGAAATGTAGAAGACCTTGCCCTTCTACCTCACAATCTTCACCTCTGCTTGTCCCACTGCTCCCAGCTAAAGTCCTACTTTTGCAAAGGAAAGTTTCT------------TTGACAGGTCAGCTTCATCAAACACTC--AGCATCCTGTCCTGTGACTGTGGTCCAGAATGCTCAATTGCCACAGTTGAATTTTATCATTTTATCAAAATCTAATGAGTGTCATTCTCTGAATAGAGGATGTAGTTAGATGAAAAGTGATTGTCTCTATTATTTTCTC---ATTGTATTCTCATTGGTTAACACTATGGTTTGTATTGCTAACAGTTTAATAACTATTTGTTACATGCATGATTGGCC-----TGGATAGATTTCCTGATT-GGCTCATCACCTGAGGCTATGGAGGTTGGAAACTAAAGGCAGGGAGATGAAGCCTACTGAGTTTTCAGAGGCAACAGGTACTGCCAA-GACTGACCAGTTGCATATAT---ATATCAGACATGTTGAGGAGC-TTTGCATTTATAAGTCTGAGTATCACTTTAATCTATGAATTCAAGATGCATAAAGCAGCAAGCATGAGAAGAGGATATGATGGAAAATATACCAT-CAGAAGATAGCCTGTCACTCTCTATTTACATTGATATGGGAAGAGTGCATGTATTTATTCAGTACATTTTTACTTTGTAGGCTGTCACACAGTAGAAATTGACAGCAAGCAGGACCACCCCCCCAGGAGGTTTTTGGTATGTTCTGGCTTCTACACCAATTCTGTATTTGTCAGGA---------TTGCTTGTGAGCTGA----------CAGTTAGGGAGT-----------------ACTTCTTCCTGTGA-GTATAAATTCATTTTTTCCCTTAGTTCAGAGAACCACCTATTTTTATTGGACAACACTTCTCAGTGAGTGAAGTCCTACTGCACTACCAAGTTTGTCTTCTGAGTCGTGGAGACAAAGCAGAGTTGCCCCTAACTTCATCTTCA---------GCCAT------AAGCCTTGGCT--GAGATCCCACAGCA-TCTGAGTGAAG-ATGCTCTCTAT-------------CTTCAAGTCTTTCAGAGGGCTGGCAGACAGGA-CTGATGGGAAGGAATAAGCCAGTTAGGAGTAGAAAAAGATGggaaggaaagaaggaaggaaggaaggaaggaaggaaggaaggaaggaagagagggagggagggagggagagaagaaggaag
s HiC_scaffold_1 115902647 2795 - 233722169 GTTTCCTGGTCATCTCACCTGGTGCCAAGTACTGGGTCAGTGTTTTCCTTATCTTTCATGTTCTGTCCAAGTCAGTCCAGCCTAGATTAGTCAGCTCCTTGCCTCCAACATGTGGCTGTTCTCTCCTAGCTCCTTGCTTCACTATCAAGAGAGAGAAACCAAAT-CTGACTAGCTCAGGATAAAGCAAATCTTACAGAAAGGATACTCAGGTATCTTGCTGGCCACAGAGATTAAAGACTGACTG--AGTTGAATGTCCAGCCTCTTTGACATGTCTTGCCGTCTGTCTGGGATATGGTATGTTGCCTCCTCTCTCCAGTTTAACTCCTAGTGCTCCCTGCAACCCAGTTTTCCTGGCACAGTGTTCCTGGGCAGAAATGGCTTCCTCACCCCAACCACATTCT--TGGTTTCCGTTAC------CCTGGGTAACTTTATCCTGGGTCCCACCTCTGGACTTGTAGCAGGGAGAACCTGATTGATCCTAGATAcccagctttttttctctctcaccaCTGCTTCAATCCTTTGAAGATGTATCCCTCTTCACTCTCTTCTGCCTTCATTATATTCTCTCTCAGGGGTGACCTCATTTATCCTTGCTATAGAACCTGCACCAGTGACTCCCAAATGTATAAACCATGCCACCTCTCTCTTCTGAGCGCAAGCCTCATAAACCCAGGAGCCCATTTGAGTTTTTCACTTTATCTCAAAGACACTTCTAGTTTCTTA-TGTAGAAAACAAAGATTGTG----TTCTTTCTACCCCCTTCACCCTTATTCCTACCCACCCAACTAGACAGTATTCTTGTGTTCCACACATCACTGTTACCCTAGAGCGGGTGTCCTGTCATTGTCCTTGGTGCTTCCCCTTCATGCATTCCCTATATCTAGTT-ATCATAAAATTTATAGATTTTGTTTCCTAAATATGTCTTGACTCAGTCCAcatctctctgtcttttctgacaCCTCTCTACCTAAAGGGA--TCATCATCTGCTGCCTGGATTATActctaactttttaaactggcctCCTCAGcatccttt-tactttttccttaatATTCTGGCCATTCTCTA--TATTGAACCAGAGCAAACCttaaaaaatgagaggaagagaagaaatgggAGGGAATAAGGACAAGTAATAAGTGGGCATGAATATGGTCAAAATATATTACACACGTTGAATCCCTCCCATAAATGTGTGAAGCTAAGGGGAGCTGGTGTGTGGGGAGCGAGGGGACGAAATGATTGAAGTGTGCTATAGGCATGTatgaatctgccaaaatgaagTCCCCTAATCTGTACAAACAATACACTCTAATAGAAAATTGTGgaggaaaaagaacagagaaaaaaagccttgaaaaattaatcaaaataccCCATTGTCTAAAATCCTTCAATGGATTCCTCTtgagtttaaaataaaacctgaaatcCTTGACACTATGCCTTCTTTGGTCTGCCTTTCCCTCCACCTTTATCTTTTGGTGTctctttattcttctt-atttctGACACACCAGCATTTGTcaaggtcatttatgacaaa--atccatagaaaaagaatttcagtgCAGGCACTCGTGAAGTTGTGCTGCTAAACCACGCATGCAGGTGATCCAAACAGGCCCCATCCCCTGCCTTCTGTTAGccttgttttcat-ttctcaaaagTAGCAAGCTGCCTCTAAGGTTAGGCTTCTAGGAAAGTAGAAAATGATACTCTGCTTCCTACCACCTTCTAATCCCACTCACCCATCTGCATTCAGCTAGAGTA----------GGAGCAGACTTTCTGGGTCTCTAACATTGTCAAGCCAAGTTTATTAAACACTCTCAGCATCCTTCCCTGTAACTGTCATCCAGAGTTCTCAATTATAATGGTTgagttttatcattttatcacAATTCAATTAGTGTCATTCTCTGTATGCAGAGTGTAGTTAGATGAAAAGCAATCATATCTACTATTCTTTCTATGTTGTATCCTCACTGTGTAACACTCTGGTTTGTGTGACTGTAAGTTCAATAAAAATTTGTTGCATGCATGGATGGCCCAGCTTGGATTGGATCCATGACTGGGTTCTTCACTTGAAGCTGGGAAACCTGGAAACTAAAAGGAGCTGGATCAAGTCTGCCACTTCATCATGGGCAGCATGTACTGAAAAGGGCTGGCAAGCTCTATAAATTGGACACCATGCATGATGGTGGTCATCTTTCTCTGAGACTCTGAGTGTCTCTCTA------------------CAT-----------------------------------ATTTACCATACAGAAGAAA------------------------------------------TATTAACTAAGCAC-TTATTAC-----AGCCTGACATGCAATAGAAATCTACATCAAGCAGA---ACCCACTCAGAAGCTCTTTGACGTAATCTTGCTCCCATTTCAATTCTGAGTCTGTCAAGATTTCCCAATTTGcttgatgtttaaaaaatttttttaattaaaaaatttgcttgatgtttaaaaatatcttcttctgatataaaaatctcattttcttcttaattttgaaGACTATCTA--TATATCCAAAAATACTCCCCAATAAATGGAATCCTGCTGTACTTCCA---------------------AGATAAAGCAAACCTGTTGCCAACTCAAACTTCACTCTAAAAGTCCATCCTTCCAAGCCCTTACTCAGGGACTCTTTAGCAGCCTTGGTGGAGAATGCTTTCCACCAGGGCCAATAAACTTGCATGCTTTTTGAGGATAGGCAGGCAGGAGGTAATGG--AGAAATGAGTCAg------gtaggaaagaaaggaaaggaaagaa-aaagaaaggaaaggaggaagaaaagaatagaggaaggcatggaggaaggga-ggaaagaaaagggagg

a score=59386
s chr3           105296042 2960 + 160039680 AGGAAGAAGGAGAAAGAGGGGGAAAACTATGTGCTCCTAGTCCATA-TGCCATTCACTCTTGTAGTTGTGACTCCTGTAATAAACCTTCCTGTGGAACAGAGAGGCTCAGAGCAT-GTGGCTG---------------TTCTTCTCTACAGTGGTTTCTCGTTTGTCTTCCCTGTCTGTGGTGAACATCTGTTGAACCAAATTGATAACAATAGGGGAGCTGTTATTGACAAGGTGTGAGGTGGATCATCCATCCAGACGCTTTGGGGCTTAGTCTTGAG-ATATTTGCTGGATTCTGGGCATGAAAGGGCAAAGTGGG---------TGAAGGGCTAGGTGGGATATTCAGTGTCTC-GTCCATTAACTCTCCGTGCACACTTCCCTATGTACTTGTCACTGTCCATCTGTTTTTCCTTTGTCTTGGATCAATTCCTGCTGCCCTGACTCCCTAGCTAGGCTTGATGTTACCTGGTCCCATTCCAACTGTGAACCCATATGCACATCAATCTTGACAATGCACCTGAGGTTTTGCTCACATTTGCTTCAGCTGCCAATCCAAACACTTCCATCTGT-TAATGGAGTGGTGTGCTCACATC-AAAGAAGATCTGAGAGCAAGGTGCACTGACCACTGACTCACACTTGCATTGACCACTGGCCCAGGTGAGTGTTCTGTTGGGTGACTGATCTGCTGGTGAGGGAGGCCACCAGATGGGCATCATAGACCATAATAGTTTTACTTTTGAGGCTACCTGGACTCTTGGTAACTTGGTGTGTGTGTGTAcatgtgcataaagcataaatgtccgtgtgtgtatgcacatgggagcatgtgtaaacatgtttaaaggtgaattgtgtgtttgtatgtacgtgcatgtgtatgtatgtatgcacacacatccatatgtgcaaaaagattcatgcatgaatgcacatggtctatacatgtgatcatgtataaaggtGTGTGTGTGTGTT-TTATTTGG-AATATTTTCCAAGTGTGT-TCTTGTGTCAGAGTGCTTTTCAGAGCTGACAGGAATCTGACACACATTCCTTTATAATTTTGCTCTTGGAAAATATTTCCTGACCTGCTGCACTGAGTCGCTGAATGGTATTCTCCTGAAGTG-GGATGGAGAGGATGTCTGGAGATCTCTGa----gaatgtcaggg-tcagaactcagttctctggtgttctcaagatctccaggtaattctgatgtaaccaggttgacacccacAGAGACCAGACTCTTACTGGTAAAGCATGGAGTAGAGCTACAGAGCTATCTGAGGCTACAGAGGACACACAGCCAGTGAGCTATGACATGGCAACCCCATGA-ATAGACAAAGAAGGAAGGCAACTTGAAGATTGGCTGCAGGAAGCCAGTCGGTGGGTTGGTGCTCCTGACATTTGTGAATGAAAAGCCTTATTGGTGCATTGAGCCCTGTAGGCCATTTGGCAATGTCCTTTGTCTTTGCCCAATACAATTTGCAGATCTTATCATGTGACCCTTCAGGACAAGCAACGTCACTCCACATAGAGGATACCGTAGAGGAGCAACAGCTAGACAGAATAAGATTCACACCCAagggggtttccagaggggaaaccaggaaagggttaacatttgaaatgtaaataaataaaatatccaattaaaaaaagaaCTTTTGTGTTTACTTTGTTATaagaaagaaagaaaggaaggaaggaaggaaggaag--gaaggaaggaaggaag-gaaggaagaaagAC-TTACAACCAGGCTAGAcactggctaactgagaaaccttggggaagttactgtgcccacctgag--ttcagttcctcatctgtcattagaggagaacaataatgttggccttgcaagactattctaggattGCCTGGGGCCAGCACCTAGCAAGCACAATCAT-TGACTCATCTTTT--ACAGTGGACAGCACTACAGACAGGTGGATGGATGGTGGCGGAGTTGACTGTGGTAAAACAGC-TACCTTCCAGGGGTCAAAGGGAATCCAAGAGTTAATGGACAAAGTATGAAGGTAGGTGT--GGGAGGAAACAGTGGAGGCCAGAGTAGCGAGAGAAAGTTTAAGCAGGCTTCCTATAGACA---ACCTTCATGTTGCATTCCTTTGTCTATCCATGGGGATGGCTGTGGACAGCTCACTGCCCATGTGTGCTCTGCAGCCTCAGCTCCTGGGACTAGCTCT----CCCTGTAGGTACCACCTAAGTTACTGGTTACAGCTG-----CCCTGCGTACTTGTCTCTGTATTTCCTCCATTCTATATTGCCCATCCGGGACCACACAGCTGTGGACCCCAGGGTTCCTAAAGCCCTT--CTGCCTCTAGCCTGTGGGACACAGGAAGGCCCTTCTGACCAAAGGGTATTTTT------------------AGCTGTTCCAGCC--CCCTGAGGCCTATTTTTAGCATCCAGCTGAAAGCTAGGCAGCTTCTCTATGGTCAATGGGAAGGGGGGTGA-TGGATCCTGACTGGCACATTGTTTTGCCAGCCCAGCCAAGCTGGCATAACTTCAGGCAGGATAATTACAGTAGTAAAATCTGGATTTCACAGCTTGAGCTTCACCAAGGCTGTGGGCAATCACCATTCGGAAGAGTTTATGCTCTCTGCACGGGATTTAAAAGCTTTCTGGTTCCATAGTGTTCTGTGGTATAAGGAATGAAATAAGGCTCTAGGGCAGTGTAAAACAGCCAAGGAGAGAGTCAGAGAGACAAAAAAATCTGGCAAAGGGTCCCAGGGAGCCCCAAGGAGAGGCA--GAAGCAAAAGACCAGGCAACTGAAAACAGAGACACAGCTAAGCACTGGGCTGGGGAGGAGGGAAGTTTTATGTGGGG-ACAGGTGCAGACCAAAAGAGAACCAAGTCAGGAATGGCAGGAAGAGATGACCAAGCCCCGCAGC-TAAGTTTATGGAAGACTTCCAGTATGTAGGGTAAGACCCTGAATTCTTCTAGGAATTGTCTCTTATTTCAGCAGCAAGATTTCAT
s HiC_scaffold_1 115905417 2529 - 233722169 aggaagggaggaaagaaaagggaggcTTCTTTGTTCCTGGTCCAAAGCTCTGCTCACTCTCCTAATTATGATTCCTGTAATAAACTTGCCTATGGAATGAAGATGCTAAGAACACCATggcttctatctctctctctcttcttttttacaGTGGTGCATTATTTATCTTCC-TGTCTTAGGTAAACATCTGTTGAACCAAATTGATAACAATAGAAGAGCTGTTATTGACATGGGGCAGGGTGTGTCATTCATCCATTAACTCAGGAGCTTAGTCCTGGGGATATTTCCTGGATCACAAAGAAGAAGAAGTCAAGTAGGCAGGCTGGCTGATGAG-TGGATGGAATTCTTAGTTACCCAGCCCATTAGCTCT---TGC-CACTCCCCTCTGTGCTTGtcactttccatttgtttttccatTGTCTTGAGTTAATTCATATTACCCTGCCTCCCTATCCAGGCGTGATGTTACCTGGTACCATTCCAATTCCAAACTTGCCTGCATATTAATCTTGACAATGCACCTGTGGTTTCACATTTTCTTACTTCAGCTACTAATCCAAATAGCTCCATCTGTGCAATGTATGGGATTCTTTGTATCAAAAGAAGATTTGGGGGCAGGACA-------CATTGATTTGCACTTCTACTGACCACTGGCCATGAGAAGCAGTTTGTCAGGAGA---GAATGCAG--GAGAGAAGTTTCAAAATTATTGCTATAAGTCATGAGAGTTTTACCTTTTGAGCCACACAGCCCC-------CTTAGT-------TATAC-------TAAGAAATATGTGTGGGTGCATATGTGCATACAG-------------------------------------Ttgcaggtatgtgtgtgtgtgtgtgtgt---------------------------------------------------------------------------gtgtgtgtgtgttttcttatttggaaatgtttttcaaGTGCTTATCTCGTGTCAAAGATCTGTTCAGAGCATACAGGA--CCAGCACCCA-CCCTTTACAATTTT-CTCTTGGAAAATGCTTTTCAGTGTGGTGCCTTGCATACTTAAATAAGAATTTCCTGGAGTGAGGATGGGGAGGGCCTACATAGACCCATGAAAATGAATGTCTGGGAGTAGGGCTCTACTCTCTGAT-TTTTATAGCTCTCCAGGTAATTCT-----------------ACCC-----------------------------------------------CTATCCAAGCTT---GATAGCAC--------TGGATCAAGGCACGGCTGCAGCATGATGTAGA--------------GGTTTCCAGATT--CTGC-----------------------TTTCATGACATTTTGTGTTAGGGGGTC-------TGCCTTATGCATTGCAGGATATTTGACAGCATTCCTGATCTCTACTCATTAAAATCC---------------------------ATTAGCAATTCCTCCC--------------------------ATAGTTA-------------TAACAATCAACACTGTTTCCAG----------------------ACATT--------------GTTAAGTGTCCCCTGTAAAACAGAA---------TTACTCC----------------AAGTGGAGGACGGATGTAGAGGAGCTGACAGAGCTGAGGAGGTGTAGCCAGATAAATATTCAAACCAGGAT-------------CTGAGATACTGGGGGCAAATTATTATGCTTCCCTGAGCcttggtttcttcatctgtaactttaagaaaataataatcctGACCTTATGAGA--GTGCTGGAATTGTTCAGAGTCAGTGCTAAGCAAAGATAAGCATCTGTCTCCCCTATTGGAAAGTTGGCA--CCTTAGGATGGCTGGATAGCTGGGGACCAGGTCAA--AGGGTAGAGAACCTTCCCCTTCTGAGAACTGGGTGAGCCAAAGAGTCAGTAAGAAAAGAGTGAAGGCAGTTGTAGAGGGGAAAGCTGTGGAGGTCAGAGCAAGGAGACAGAGCTAAAGAGGGCTTTGTGTGCCCATGTACCCCCA-GTTGCCTTTCCTCCTC----------ATTGGCTCTGGAAGAC-----GGCCATG-GTGATCTA----CTCAGCT-TTGTGACCAGTTCTGCAGCCTATTGTGTGAAAAGCAAGTTACTGA-TAGACCTGTTAGCCTCTGGGT-CATGCCTGTGTGGCCTCCCCATTCCCCCCTGTCCATCTGGGGCCATGCAGCTGTGGACCACAGGGTTCCT---GCCCCTGACAGCCTTCAGTTTGTGGGGCACAGGAAGGCTCCACTATCAGAAGCATATTTTTAGCTCTCCTTTAGCTGTAAGCTGCCCCAGCCTGCTCCTATGCCTATTTTTAGCATCTGG-TGTTGGCTGGATAGCTTCTTCATGCTCAGTGG--AAGGTGGTGATTGGCTCCTGACTGGCATGTGGCTTTGCCAATCCAGCCACGTTGGCACAGCTTCAGGCAGGATAATTACAGTAGTAAATTCTGGATTTCACAGCTCAGATTTCACAGAGGCTGTGGAGAA-CACCATTCAGGGGAGTTTATTTTCTCTGCGCAGGATTTGAAAACTCTCTGGTACCATAATGGTCTAAGGAATAGGCAAAGAAGTTAGGCACCCAGGAAATATTGAAAGAGCAGGAAATGAG-----GACCCAGATGA-----------------AGTAGGCCTAGAGGAAAGGGATGGAACTAaatgacaaaacaacacaaagcagAGACGGGGTTAA-CGATAGGC-------------------ATGTGAGGCAGAGACACAgactaaaagaaaa---------------cagagagagacaagaaACCCTGACAGCTTACATTTAGAAAGGGCTTCCAGTGTGCTGGTCAGGGCCCTGAATTC-TATATGTGTTGTTTCT----------GTAAGGTTTTAT

a score=120379
s chr3           105299005 3550 + 160039680 TTCCCAATTTTACAGAGTCAATGTGAATGACCAACCAACCAACCCCGGGGTTCTATGCAGCCTCATTGATGGAGGATTCAGGCCACATCTGACCTCAGAGGCTGCACTCATCCACCATGTTCAATGGGATGGAACAGTGACACACAGAGACCAGTCGAAGCTGGAGGGAGGACAGTGGAG----GGGATACATCATAGGCACA--GTCTGCTGGGTCGCTTGAGGCTGATCCTTTCTCTGTTTCCCAGGGAAGACAGCTTAGAAACGGGGAGCATTGATCGAGGTGTCAGTTGTGAATTATAGCATTTCTCCGAAATGTGTGTCATGCTGACAGGGTCCCTGTACCACCAGAGAGGCGGCCTGATATGCTTCAAGCTAGCAAGCAGAGTGATTGCAGCCCAGCTGTTTCCACTGTTTGGAAATACCATCTTCCACCATGTCATTAAGCTAATTGAACAGGCCAACTTAGGAAGGCAGTGGGGCAGGGGGGCAGGTGATAATAGCTTTGGATTTGCCCACTGTCATTCACAGCCTGACCTGATTCTGCCCACTGCTCCTCTCTGGAACT--GAGATCCACT-GCCCCAGCCAAAGCCATGGATGATAAACACTATGCAGGGAAAGGAATT-GTTTTGCTAATGATTTTCACCCCTTAAGATCTCAACCCTGGCTGGAGCTCCCAGTTCATCTTTCTACATTTGTTGAGGCTTTAACCAACACAGGCAACAAGAAAGCCATTTCCAAAGACAAGGGCCCGCCTGTGTTGACAGTGATCATAAGTCATCCCTTCTGCACCCAGTTCTGATACCTCTTGCACCATGTAGTCATCTGTCTTGATAAATCTCC------------------CATGGGAACTGTGGCTGCTATGACTATGGGTGCCCCTGATTTCCTCTGGCATTTTCAGG-AGAGGATTGTGGGATTCTATTATGTGATATCACACATCTGAATCAGAAGATATTCATGGCTGGAC-----------------------------AGGCAGAGAATGGAGTCCTGACTACTTTTTTAACCTGGGCATGTATTGGGAGAGGGGAAAT-------------------------------------------TGGCATTCATTGCTATCCCCAGGGACCTTTTGCCAACTGGTTTT-TCATTTGAAAAGGGCAGGTGCCACCTTGAACACCT-GCCCTCGGGGAGGTGACAGGGCATGTGGAGAGACAGGACAGATGAACATGCAGCTGTAATGATCCAGTGGTTGGGATATTAAGCTTTGCTCACACTAGCTGGGGAGGAGATCA-------------TAAG---CCATTTATTGGCACCAAAAGGTGACTACAGT----GGTCAGCAATTGGGTCTGGGAATAGCAAGGAGCCAG--TGGGAGGCTCCCAGCAGCTGCCAAGCAAGTCA-------------------------CCCTG--TTCTTCAAAATGGTCTGGCCTTGAGGGGCCATTGAAT--GAGGTGCCGGGCAGGCA----TTCTGTTAGAGGGCTCTATGACTGGGGCTCATCTTCAGGGAGGGTGGGGAGCACCAGTAGATGTTCTGTGTGCTGCTGGGCTACAGCTTGTGCACATAGTTTCCAACTCTGAGGCTCTTCTGTCTAGGAACCAAATGGCAG--TGACTGGAAGGGGTTGATTCTGGTTCCCGTG--------------GCGAAACCTTTACTCAG----TGACACCTGTATCAGATGGAAGCTCACACCAAGGATTCTGAGAACTCCACCAGTGAATAGGATGATGTCGGACTGGTCTAGTGGATGGTTTGCAGAA-----------------TAAGCAGCTTTAGTTCAGAAGTAAAAGGAAATGGATTTTATCATTGTCCATAAATGGACTCATGT-----TTAGTGTTGTAATACTGGCTATTAAATGTTTTGAATGTTTCTTTTG-GCAAGTACCTACACACCAAGAGTAG-AAT-GTTTCAAGGTCAAAACATCAATCACGTGGGAAGGGTCAAA------------------AGGCAACAGCATGGTCAGAAAGGAA--------------------------TGA-------------------AGCACCGGAAG---AGCAAGGGCATTCTGGCAGGACAAGGAGACTGTGAGGAGGAGACAGGA---AGGAACAGGCACTTAGCACAGGGTACCTCCTCTGCTTACAGAGGGCAAA-GCTGGAATGTGGAGACACAAGGGCTCTGACAGTAATGGCAACAGACACTTGAACCCCAAGGACATTTTGAAATCCAGGAAAGAAAAGCTGCCTTTGCATCTTGAAAGCCTGGGAACAATTAGAAT-GTTCCTGCCACAGCGAAGGAGGAAATGCGAACA-GGAGATAGTGGGAGAGTCTTAATTAATAGTTTCTTGTGGCTTATTCCTGCTTTGATCACGCAGCTGATATTTCTGCAGTCTATTACAAACTTCATTAAGTTTATTTGCCTGCCAGGCGCCTGCCCTTTCTCCTGTCCTGTCCTGTCAAAGATAATTGACTGCAGTGGCTCAGCTGGTCCCTTCTGAGCCCCACTTGGAGCATGGGCTGGTGGAGGACACCTGAAGGGAATTTGC--AATGCAGACCCAGAGGGAGTCA--------------------GATGGTGAGACAGTGCCCACTACCAGGCCTGTGCTCAAGATAGA----GCAGCATTTACATGCACCTGGGAGGGCTTTCCC------------------------------------------------------------------------------------------------------------AAGTTCAagtcc---------------------------cttctgcacaggccaatgctaaaatcccttagctaatgcttgatctcctccagcgat-gggggttcattactccagaagca-ctttctccatccttagctccaactgGGTGTGAAACATGATGCTTTTAACTCCTACCATATGATCC-AGTGTTCTCACTTGAATCAATAAGTTAACGAAGAAAAACAATTTACTTTCAACAAACTTTATCATACATTT---AAGAAAGATTGTTTTGTACTAGCTTTCC-------TTGGCCAAACATCTTGGAATTGTCCAGT---TCTTCACATAACATaa--catatctttt--------------aaattgtgccatccttagaattgaaagaatat--------------------------ccaagtgtggctgtcccagagcaaggcaaggc-------tcccaactcttgttttagac-----------actcatgcagcccaattcacctc----tgctcttgaatcagccacattactctattaacAAAACATCTGAGATTTACACATGGGCCAATAATAACTCTCTCCAAGGTGTGCTCATTCAT-AGAGCTATTGTAAATAGTTTAATGGAATAGGTAACAACAGTACTGCCTGTTATAGATGCTGCTAACAAATAAA--------GTAAAAGCTGACTAATTTAACTAGGGAACTGTGTCCCCCAAGTCCATGTTTATTTTT-CAATAGTTTGAAATTATATTAATTGACCT---ATTAATTATATTTAAAAGAATTCTTTCATGAGTGGTCTAGATATGTTCAAACTAGCACATTTACAGGTAACTTGTTTACTGTTAAGACAATTACCCAAATAATAAGCTATTAAATGCACAttaacatataataattgtgtaaagaataactaagtaattaattaacatttaatgtaattcatagcaaattagatagcaagacttattaaatgtcaattag-ccatattagctactgacacctaagtgattcaatatgctaatgctaattaatgtcttatttcttacaagcttaatggtgtaacaaaacttatttacatacttaGAG--TCTTAAAGTCACTAGACGGCCTGAAGTAAGAGTAGCTGTCAGGGTAGAGGTTTGGGAAAAGCCATTAGGAGAAATTGATTACTGTTTTA
s HiC_scaffold_1 115908592 3974 - 233722169 TTACCATATTTACAGTG--AGAGTGAATAATTAAATAACCCAC-------TAGTATATA--CTGGTGGAACCAGGATATAGGCTGAGTCTCAACTCCAAGATTGCCCTCAGTCAGTTTATTCAG-GAGATGGAACTGCCACACACAGCGACCagcagaaggaagagagaga----tgaAGCCCAGATACACATCATGACTAGAAGGCCTGGTAGACCACTGGAGGCGAATACCTTGTCTGTTTCCTTGGAAAGACAGCTCAGAAATGGGCACCATTGATTGAGGTGTCAGGATTGAATTATAGCATTTCCCTGAAATGTGTGTCACACTGATAGGGTCCTTGTGCTACCACAGAGACTGCCTGACATGCTTCCCACCAGCAACCAGAGTGACTGCAGACCAGCTGTTTTCACTGTTCAGAAATACCATCTCCTACCATGTCATTACATTAATTGAACAGGCTGACTTAGGAAGGCTGT--------GGGGCAGGCGATAATAGTTTTGGATTTGTCTGTTGTTATTCAAATCCCACCCTTACCCTGCCCATTGCTCTTCTTTGGAACTCCTAGACCCACCAGTCCCTGTGAAGGGCAT-GATAATAAATGCTATGCAAGGACAGAAATTAGCCTTGCTAATAATCTCCACCACAAAAAATTTTGGTCTTAATGGAGACCCTGAGTTCATCTTTCTACATTTGTTGAGGCATCAACCAACAAAGGCAACAAAAAAGTCACTTCCAAAAATGAGGGCCTGCCTGTGTCAACAGCAATCATAAGTCATTCCTTCTGC-------TCCTGCCCCTCCCTATCTACATAGCCATCCATCTCCATAAATCTCCTGAGCAGGTGGAGATTTATACAGGAGCTGTGGCTTCCACATCTGTGG--CCTCCTAATTACCTCTGACATCCTCAGGAAGAGGACCATGGGATTCTATCATATTACATTATATAGCTAAATCAGAAGATATTAATGGTCAGGCTGCTGCTCATAAGGCAATGCCTGTTGGTGAGGCCAAGAATGGAAACCAGATTTC-CTCTCATTCTGGAAGTGTGTTGGGGAAGACAAAATGTAAGATTTGTTTCTGAGGCCCAATGGACTGGCAAAACTACTGTGCTAGTTGTTGCTATATTGAG---CCTTTTatcaatttgttttctcttttgaaaggGACAGATAACTTCTAGAACACCTAACTTTTAGGGAGGTGACAGGGTATGTGGGGATGTAGGATATATGAATACATCTTCATAGCAAACCCTTTGTT-GGATATTAAGTCACTTCCATACTTCTTGGGAAATAGGTTAAGTGGTTGGAGCTTAAGTCATCATTTGATGTTGCTAAGAGGTGGCCACAATGACAGGTAATAAATTGGAGTGGGGGGTCATAGGGAGCAGACCTGAGGGGCCCCCAGCAGCTGCTGAGCAAACTAAAATTGATCATGGACTGTGCACAGTCTTTGCCTCCTTCAGAGTGGGCTGGTGTTGATGGGGGATTGAGTCAGAGTAGGCAGATTGGTAGCAGCCTTGTTGGAGAG--CCAGGACAGACCCTCAGATTCTGGCCAGGTGGGAAGCATGGGCATCAGGTGCACATTCAGCTGTGCTGTGTTTGCTACACAAAGCTCCTGACCCTGGGACCCTTCTGCTTAACAAGTGAACAGGAGAATTTTTGGAAGGGTTTG---CAGTTCCTCATGTCCAGTAATGGTCAGAGAGGCTATGACTTAGCTACTGACAGCTACATGAAATAAAAGattatacaaataatttttaaaaatcagcaaaggaataGGATGCTATTGGAATAGTCTGATGAATGACTTGCAGTACAGCTTGTATCACCTGGTAAACAGCTTTCATCTGAGAACGAAaggaaataaatctaaaaattctTTACATAATGACTTATGTGTTGATTTATATTGCCATACTTGTTGTT-AATATTTGAAATGTTACCCTTGCACAGACACATAC-CCCCAAGGCTAGCAATAGTTTCAAGGTCAAAATAGCATACATATCACAGTGCTCAGACCCAGTAATAAGGATTGTGGGCAGCAGCATCAACAAAGAGAAAGAGCTGCCAGTCTTCCAGAGGCTTTCTGAGGGAGGGGAGTTTCCAACCAGTGTTGGAAGCTCAGCAA--GCACTTTGCAGGGTGAAGCATTGTGTGTGGAGGGCACAGGACAGGGAATCAGGCACTCAGCACAGGATGCCTCACTGGCTTGCAGAGGGCAAAGGTTGGCACACAGGGATGCTGGGG-GCTACCCATGATTGC-ACAGACACTTG-ACCCCAACAGCACTTTGAAATCTGGGAATGAAAAGCTGCCTTTGAATCTTGAAAGACTGGGAACAATTAGAGTGGTTGCTGCCATAGTGAAGAAGGAAACACGACCAGGGAGATAGTGGGAGAGTGTTAATTAATAGTTTCTTGTGGCTTATTCCTGCTTTGATCATGAGGCTGATATTTCTGCAGTCTATTACAAACTTCATTAAGTGTATTTGTCTGCCAGGCACCTGCCCtttctcctgtcctgtcctgccaAAGATAAATGACTCCAGTGGCTCAGCTGATTCCTTCCCAGCTCTTCTCAATGT--------GTGGAGGACACTTGAAGGGAAGTTGCTGCAGGGAGACCCAGGAGACACCAAGTAGGCCTTTCACTACCACAGTGGGGAGATGATGTCCATGACAAGCCACCAAATCAGAATGAAAACCAAAGAGCTTACACACACCTGTGAGCCTTTTCCTAAAGTGAACCAGAGAATGTGGCTCCAGGCTGAATCTAGGCCAGTGAGTTGGTCTGAGCAAGCAATTTATCATGACAGTCGCAGAATCTCTGCCTTACAAGGCATTGGAAAGGTCACCTCCTCCAACCACCCATCTGAAACTTGAGAACCTCTGCACAAGCTATTGCTGAAACC---------ATGCTTGAACACCTCCTGTGACAAGGAGCTCATTATTCTACTGGCAGCTCATTCCATCCTCAGACAGCTCTGAGTCTAAAATTTGTTCCTTTCAACTTCAAACTTATGATCCAAGTACTCTAAATGGAGTCAATCAGTTAA-AAAGATAACTAATTTATCTTCCATAAACCTCATCATATATGTGAAGAGAGGGATTCTATTGTCCTAGTGTTCCCTCAAGTCTAGTTAAATATCTTCAACTTCTTCACTAAGTTTCCACATAACATAATTCATATCTTTTTAAAGATACTTGGGATATTTTGCCATTTCTAGAGTTGACAAAATATCCCAAGTATGGCTAGACCAAAATATCCCAAGTATGGCTAGGCCAGTGCAAAGCAGAGCAGAACTATTACCTTCTTTGTTTTAGACATTGTATTTGTACTAATGGAGTCACAGTCATAGCTGCTTGCTTTTGTGTCAGCCACACTATTCTG------------CAGAGATTT------------------AATCTCTATAAGTTATATCAGATTATCAGAGTCAGTTTAAATAGCTTATTAGAATGGGGAATGATAACATTGTATGTTATGGGTGCTGATGGTGGACAAACAACCCTTGAAAACTCTG-CCAATGTAACAGGGAGATTGTGGCACAAAAAGTGATGGTTCTTTGCACAGTGGTTTTAAGTTACATTAATTAGTCCATAATTGATTATGTTTAAGAGAATGGTTTTCAGAATGATCCAAATATGTCTAAGCCA--ATGTTAGCAGGTAACTTATTTACCCTTAAGATAATCATCCAAATAATAAGCTATTAAATGCACATTAACATATAACAATTgtgtaaaaaag---taactaaacaaTTAACATTTAATGTAACTCATAGTAAATTAGATAATCAGACTTATTAAATGTCAATTAGCCCATATTAGCTACTGTCATCTAAGTGATTATACATGCTAATgctaattaat---ttatttcttacaagccTAATGacttaacaaaatatatttacatatttagaaTTTCTTAAAGTCACCAGACAGCAAGATATGAAAGTAGTTGTGTGTGTGGTGGTTTGGGAAAAGAGATTAAAGGAAATCGGTTAATGTTTTA

a score=11101
s chr3           105303052 1527 + 160039680 ATAATCCCTACAATGTGTCTGT-GTTACTATTCCCAGCCATCAGATAGAGGCACCATCACTCTGAGACTGGGTAAAGTGCTCAAGGTTGTGA------GTGGGAAGAACTGAGATTTCACTAGTCTCAAAGCACAcattcattcattcatttgttcattcattcattcatccatccattcatCAACACTATGTACCAGTTACTAGCTGTGCC------CAGAGACACAAAACAAACATAACTCTATCTTTTCCTTTAAGATACTCATACTACACTTCTCCTTTAAGATATAGTCATACTATAACTGGGAGAAGCATGCTAAGCTATAACTAGACACAGG-TCAATGTATTCACAGGGAAAGGGTGCTGATCCCAGTC-----------------------------------------------------------------------------------------------------GAAGGTCTGAGGATG-------------------------GGAGGTAAGTGGGGACTTGGTCCTAAAGGGCAT-GAAGGTCTCAGTGAGAAGC---AACCATTAGTGCCACCTTCCACAGTGTCCTTCAGCATCTTGGTTCAGTTTCAGAGTCTGACCTTGGGGTACATGTGGTTAGAAGGATTATGGAGGTTGACACAATGGATGGAGGAATTCTT---GAGCTAGTGAGTTCCCTACCT---GTGTAGAAATGTCT-TTAAGAGGCTCATCCATTGCATTTGCCCTCCTGACCCA-ACACCATCACAGGGAAAGTGTAGA-------AAAAGACCAAAGGTATGCTGCATAAGAACAGCAACAGATGGC------------TCCTAGCTCTTCCATCTTTGAAAAATGGCATTGGACAAATTTCTTAGGCTCATGCTTCACTGGATAGGATGTTGCAGGGCTATTATAAGAACAAGAGTAgggcaggtaagatggctcagtgggtaaaggcatttacctcaaagtctgacaacttgagctccatcttcataccccacataaaggtggaaggagagaacctatctgacttccacattcacattggggcacacAGCCCCCCTCACTTTCTTTCATGCATAAACATAATGATTGATGATGATGACTTATAAAAGAATTCGAGTAGATTTATGTGAGGAGCCGGGACAAACCAATACACTGTCATTTCTCTTCCCACAGCCTTACCAACAGTAAGAAATCACAATGCATCAACACTAGTAACTGTCTACTGACTTAATAGGAAAGCTATGCAACTGGATATTCAAGTAATTGGAGGCAATAATTATTT----------------TCCTACCAAATCGTTGGCTGAT---------------------TCCATTCTTCAGGTGATCTGCCATCTAGACAACAAGGATGCTGAAAG------------TGACCCTCTAAGTATCTTAATTGGCAGCTGTTTCTTCTAAAAGTTTGCTGGTTTGAATTGGACAGGGGATGTGGGTGTGGTCTGGATAG--TGGAGAGTGCTGAAGGCCATCACAGTCCTGACTCTATCATCTCATGAAGGCAGCCTCCATCTCTCTTTCCTTCTGAAAAGCTGTGATAACAAGGGGGTGGGGGAGATG--TGGTATTGATGACCTGCAGAAGCCTCCTCTCACCAGCACATCCCCTCTAC------CAGGTAAAATCTGTCTAGTAAGCAGCTGA-----TAGGAAAGAGACAAGGAGTACAGCCATag
s HiC_scaffold_1 115918213 1479 - 233722169 ATAATTCCTATAAAAtaggtattattattattctcaac----AGACCAGGACCCTGAGACTCTGAAATTAAGTAAACTGCCTAAAGTTTTAGCCCACTTTGTGAAGGA--AAGAT----CCTGTCTTCAAGCATATATCTGACTGACCTCAGGTTCATGTtcatgttcattcattcattca-aaacacTGCATACTAAATAGGCACTGTACTGTGCCATAAAGATGCAAAACAATCACACCATTG-CTATGCTTTCAAAGGG---------------TCCCAGAAGA---------gctccaacaatgagaaaagtgctAGGACATATAGAGACACAGGATTAGTACATACATATCAGAAGGATGCTGGCACCTGTCAACGTACGAATTCCACTCTGAAGGCAAGGGGCTATGACAAATGTCAAACAAATCAATCAAAGCCTAGATGAGAAAGTGAGTAAAGGGGTTGTGGAGAGTGTGAAGGAgtggggaggaaggaaaaagccAATAGGAGAATGTGAAGGTACACAGGGACTTGATTATAAAGGACCTTGAAGGTCTTGGTAAGGAGTTGTACCCATGTGTGTCACCCTCACTAGAGGCTTCGAGCTTCTTGACTCAGCTCTGG-----------------CTTGTGGACAGCAGACTATAGGTAGTTGGCATAATTAGTAGAGGtattcttcctgaattttcaaGTCCCCTTCTTAATGTAGGGAAATGGATGTTAAGATGCCCGTTTATCACAGCTTTCCTCTTTAAACAGACACAACCACAGGAAAGGTATGAATGTATAGACAAGAC--AAGGCATACAGGCAAAAAGCAATAGCAAACAAACTTCTGTGCAAGTCTTGGCTTTGCTATTTGCCAACTATCATATTGGGCACAAT-CTTAGACACTTCATTATCTATAGAGGACTTGGCAGGACTATTATAAGAATTAGAGTAG------------------------------ATGTACATGAAA--------------------------------------------------------TGCCTGACC--------------------CATAGCA--------------------ATAAACTTAATCAGTG------------------------------------TGTG-----------------------------TTCTCTTTTCTGTAACCTCTCCAATACTTAGTGATCACAACACATAAATACTAGTAATTGGCTACACACTTAACAGGAGAGCTATGTAATTGCATcttcaaatattagaaaataataattgtCTATTAAGCCTCCTCTCCCCCTATTAAAT-ATTGTCTATTAAGACCTTCTCCCTTTTCACAATCATTCTTCATGTGATATGTTTTCTAGACCTTTATCATGTCAGTAGATTTTTCTTCGCTGAC-----AAATCTC-TAGTTGGCAGTT-TTCCTTCCAAAAG-----TAGCTAGAATTGAACCATTAGTCTGGAAATAATCTAAGCAGAATATAGAATGGATGAGTCCATCAA------------ATAATCCTATCAGAGCGACCTCAGCCACCATTAATTTCTGAGCAGCTATATCTA-------GCTGGAGACATGCATGAAGTTGGT----TGCCAAATCTAGCTCTCTCCTccatatttcttcttcttccttcaggTAAAACAAACCTACTCAGCCACTGGATCTTGAGGAAAGGCTCAGTTTGCACAACTCTAG

a score=109387
s chr3           105304963 5311 + 160039680 [encoded data, 6194 characters]
s HiC_scaffold_1 115919719 5845 - 233722169 [encoded data, 6194 characters]

a score=67838
s chr3           105315413 2183 + 160039680 TGACTGTGTTCTTGACACTATATTGATTGTTCCATTGTCCTGGACTGCTAAGTCACATGCTAGACAAATCCCTTCTGCCCCGTGTTTTATAGACTTTACTGTTGATTGACTAAGACTAG-GAAACTGCCCTGACACCTCAGCATGTGCCCTGCTTCAGCAACTCTTCAGAAAGACCTATGAGA---AAGGCAGACAGGGCCTAGGATGGATGACCCCTAAA-GGATCTGGTTGCCCTTCCTCTGGTCTGATGAAGAGAGGTAATGTTTATTGGCTGCACTAAAGGATT-GAAACACTTAACTTCATTAGAATCCTACCACAAATTCTCCTCAATCCTGGGGTT-CTAATGAAGGGGAAGAGCCATTCCCAAACTGGAGCTAATATGAGCTCTTCTGGGTCTCACTGAAGGCGATGCAAGGAGCTGGTGTCAGCTGAGTGGCCTCATAGAAAGTCCAGCCTCATAACCCGAGTCTCTGTAATTCAGTCTCAATGATTCCATGGTGTCTTACTGCACCAGCCAGATGCAAAAAGTGCCCTGCATTTGGTAAATTACTCACCTCCCTCCTGAGAACCCCACTAAGAGGAAGTTAATCCCTTTCCCATATGCTG-CTGCTTTGCTTTTCT-CGAGGTGATTTCCTAATTGGACTATTCTTTTCTCCTACAACCTTGAGGAC----TCAGAGCCCAAGGAGGAATGCACTAGCAGAAGAGTTTGTGCTTATAGG------TCAACCTGAATGAGTGGTCCACGGA-TTCGCCTGGGGGTTTGGGTGGGCCTTTTTCCCTTAATCCCAGACCTATATGTGACCTAGT-------GGGAGGCT--GAATTTTGGATCGTCTTCTGAACTTTTGGGTGGTGCTCTTTCCAAACCAATAGGAACCTA--ATCTTAGCCTCAACA-GACATCAAGACAGAATCAAATGTGTTGTGTGTTGTTTCCTCAGTGGCATTA----GCATCTAAGCTGTGTGCTGAGAGCTTAG-GAGAAACTGA---------TGTTTTCCTAAAGGGTTTGGAGTACATGAGGCATGCTGTCAGATTCA-GAATTTAACAAAAGCATCCAAGATGGCTTAGGCCAAGTTTAGCTGCATAGATCTTAGTGAGCAAAACATG-CAACTGGGACTAAACAGTGCTTACTGAGTTCCTTACCTGCTGTGCTGATACTGTGAGG-CGCAGATGAGATCCTAAACTCTAATATActcagtttctttatctgtaacatggggagaactccgcttgcctcacaggattgtgggagtgaaatgagatgggctttgtgagctgtactctgcaaatgCTAACA--CTTCACAAACAGAAGCTATTTTTGGTTAAAATGAAATATTAGACTGAAGCCTTGTTTGCCAGATTCCTCTCACTTCCCCTGATCCCAGAGACTTAGGGCAAATCTCTTGGCCCTAAAGCCAAATGTCAGAAAAGGTCCCCACAGTGCTTTATGAGTTGCAAAACAAATCCTTCTTCAAGTGAAAGAGGCTCCCCCCTTCTCTCTCCACACCCCCCACAG--TGCAGTGATAGCAAAAATTGATAggtatacagagatttttgcagtttgaaaatctgctttcctgattgtgcagatggttacacaactctgtgaacaaaatgaaaaccagtggagtgtgcacattaaatgaggaaaatctgtactgtgcaaatcacgtctcagtatagctgttccttaaaaTAATTAAATTAGAAAATAGTTAAAACCTACATTTGGTATGCTTCCTTCTACGTACCTTACCATGATCCTGAGGAATTCTCTGGCTGGATACAAGTCTCTTCTGATACAAGGAAACA------TAGCCTGGACTCTCCAGAGAAGTGTAACCAATG-----GGAGAGGT-AGtatttatt-----tatatatttttatataatat-tGTTATGTTACA---TATATTATCTGCAC-----------TATGCAATA------------------GCAAGTCCTATTATATAAATAAGGCATATTTTATGTGCATATTTCACCAATAAAGTACATATTATGTTACACAATTCATAATATTATAG-AATAAATCAT---------CTATATGATGTATATTCTGTA---ATATATCTATTATATCTAATGATAACTGCAAGTATAAACCAATAGGATTATTTGTATCTATATAGTAGAGACTACATGTTATATAATACCTGTATTAGGTAA----------ATGTACATTTTAATATtttttat------tcttgagaatttaatacacggtataataaaatcatat
s HiC_scaffold_1 115933394 2224 - 233722169 TGGCAGCATTCTTGAGATTGTACTGATTGTCATTTTGACCTGGTGTGATAAGCCACATACAAGACAATCCTCTCGTGTCCCATGCTTTAT-GATTTAACCctcaatgaaatgaaatgagtAAAACTGCTCTGAAAATTCAGCATTTCTTCTGTTCCTGTCAGTCCTTTGAAA-ACCAACAGAATACAATCTGGGTTGGGAGATGGATGGATGACCTTTAAAAGGACCTGATCATTCTTCTTTGGGTCTGATGAAAGGAGATTATGTGTGTAGGTCCCATTAAATGATTCTAAACATGT-----CATTAAAATCTAGCTATTAATTCTATCCTATCCTGAGGCTGCTAATGAAG---AAGAGTCATCTGAAAATCTAAGCCAATGTGAACTACTTTGGTTCCCGTTGGAAAAGATATAAGTGGATTGTGTCAGCTGAGTGGCCTTACAGAAAACCCAATCTCATAATCAAAGTCTCTGCAATTCAGTCTCAATTACTCCATGGTGTCCTACTTTACTAGCCAGATGCAAATATTGCCCTGCATTTGGTAAATTACACATCTCCCTCCAAAGAATCTCACTAAAGAAATTTCGCTACATTTTCCATATGTTGCCTTGTCTGTTTTCCTGAGAGATAATTTTCTAATTGGACCACTCTTTTCTCTTGTGACTTTGAGGACCCAGTCAGAGTTCAAGAAGAGAACTAGTGGCAAAAAGTTTTGTGCTTGTAAAGATCTTTGCATCTGAATGAGGGTTACAGTGACTTCGAT--AGGGTTGGAGTGGGTATGTTCATCTTAATCCTGTATCTATGGGCAACATATTAGGTGTCAGGAGACTTGGAACTTTGGCTGATCTCTT----TTTAACTTAGGGTTATTTCTGAA--AATACTGAACTACTATTTTGGCCTAAATACGACAT-------GAAAcagatat-ttatttgtaattttctcaAAGGTGTTAGACCGCACCCAGGCTATGCACTAGGATCTTAGCGAAAAGTTGAGAGGACAGTTTTCTTCCCAACCTGTT-----TCCATGATATCTGCAGCTAAAtccaggaattttaaaaaa--atacagggtGGGTTAGGCCAAGTTTAGCTTAGCAAGTCTTACTGAGAAAAGCATGCCAATCAGGACTAAGA------------------TGCCCAGTATTCTCATGCTGTGAGGCCTCAGACCAGATGATAACCTCTCCTTTACTTAGtttctttacctataaaatggGAGAAACTATATTTGCCTCACAGAGttgtgaaaataaaatgagatgcaCTATGTTAAATGTACTCTGGAAATGCTAACATGTTTTATGAATATAAGTTATTTTTggctaaaatgaaatattagaccAAAGCTTTGTTTGCTACATTCTTTTCACTTCTGCTGATTCCAGCTACTTAGGACAAATCTCTTGGCCCTGAAGTCAAATGTCAGAAAAGGTCCCCACAGTGCTC--TGAGTTGCAAAACAAATCCTTCTGCAAGC--AAAAGGATCCATTCTTCATTTTCCCCTCTCTACATGGAAAGCAACGATAACTACAATTGATAGGAGCAT-GAAGTTTCCACAGTTTAAAAATCTGCTTCCATGATTGTGAAGATGGTTGCACAACTTGGTGAATGAACTAAAATCCACTGGATTTCACActttaaattaatgaaatgtaCAATATGTGAA-CATAGTTaagcaaaact-ttttaaaaaataagtaaataagaa-----ttaaaatctgTTTTCAGGATGTTCCCTTATAAGTACCTCACAATGATC---------TTTCTGTATTGATGTATA-CTCACTTGATACACAAAGATATTATATTAATCTGAACTCTTCAGAGAGACAGAACCAATACtctcagaaagataaatatgtattatcaatatatgtgtatgtatagtATATATTGTTTTACACTGCATATAATATACACTGtcataaatatatgtgatatataacaTATAGTATCATGCATACTACATAACATGAATAAtgtatgtataat---tatattttatatat---ttacatattata-tataatatttat-atattatttcaataagttatttattaacattatataatataacatctgtatttatatatgctttatatttta-gataataaaacatatatac----attatTATCAATAGATCTATACTA-----CATATGATATATAAAATCTATATTATATAATGTGGATTGGATATATATTTTTGCCTCTTCTATTGTTTCTATTTATGGttctatatatgtaaaaatataaatatat

a score=29243
s chr3           105328287 1264 + 160039680 aatacaAGGACACAGattgaactataagatgctcaggggaagaaaccatgtgttactcatcttaggagccctaacatgattcttggcaaatagttata-caatcagtaaaccc-taagtatcagttgaatgaatgaTACCGTTTTACCCACTTTATAGATGCAGAAAACA-GGCATGGACTGGGGCACTGG--TGTCTAAATCCAACACCCTCAAGAAGTAGAGGCACAGAAAGAGGGGCCTGGATCTTCTGTTAGCCATGCTGAAGGTCATTAACTATTGGTTATCCTCTCAGGAGATCTGCATTGTGCATGCACTCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCAGCATGGGGTTA--TCCTTCCCAATCTTTTCTAAGTGGTCTTCTTCCAGAACTCTGTTTAGAAAGAAAT-------AGTTCACTAGACAACCATTCATTTTTTTTCACATAT----TTTCCTGGGTACAGGACTGTCCCAAACAAAGGGACTGATAACAAACAT---------CACCTGAGTCATCATAAGCCAACAAAATCCTTGGGCAGAT-TGTTTGTGTCACCTTCAAACAGGACAGGATACAGGGATTTGTCCCTGAGGC-CTGACTCTGCA--GTTCTGGTACCCTTCAAACACCTATTTGACCTCCTTTTCCTCACTGCAAGAGGGTCAAAA-GCACAGGCCCCTCCCTCTTTCTGCTCCCTCGCCTCAGGAACATTAATCA----TCAACCTTTCTCAAGACCTGGCATGGAAGACGCAGTTCCTAACTTCTTAATAAACTCCTACTGTCACTGAAGATGAAAGATGATTCTGGCAAAGCTTGGAGCATCCCAACTTCCCAGCTCACCAAGTGCAGGGAGGG--ACCGGGCCAGGAATGAGGAGAGGCATGCCTTCTGGAACAGGATCGCATGGGTGGGCCAGCAGAGTTAGCTGCCTTCTCCC-TTCTCCTCCTAACTGCTCTCTCTCTCTCAATGACATCTTCACAGTGTTTGCTGCAGAGTGATACAATTCAGGTTCAGTGTCCTTTTGCTAACAGTGTGTTTTGGTATGTGGACAGTGACACTAACATTTTCTTCT--CAGTGACTGACAGGTGAGCAGTGCTTTGCGGGGTGTAGG-TACAGTTCCACATAAGGAGAAACAAGGTGGCTGAATCATCAAAGCCCCTTCACCACCTGAGCCGGGAGGATCACCGGGCACCTGGGCAGGTAC---CAGAACTTGTTAGAAGCTGCTTTTCTACATTTTTGTCCACTCACTGGCCCTTCC
s HiC_scaffold_1 115939944 1172 - 233722169 aatacaaata-atacatGAGACTAGAAGCTCCTTGAGGGCAGGAACGTTATCTTATTCTTTCTAGAATACCTAATATGATTCTTGGCACGTAGTTATATCAATCAATAAATCTGTGAATGCCAGTTGAGTGG----CATCCTTTCCTCTGTTTTACAAACACAGAAACCAAGGCACAGATGAGGTTACTTACTTTTCTAAATCCAACAC----AGTAAGTAGAGATATGGAAGCACAATATCAAGTCTTCTCACAGCCATGCTAAATATATTCAACTCTCAATTAGCCTCTCAGTAGATATTCCTAGGG-----------------------------------------------------------------AGAGTTAAATTCTGTCAGCTCTTTTCAGAATTCAGTTtatccaa------gttaaaaaaaaaatcactggaagGTAAATCAACAACCACTCACTGTT----ACAAATGatgttttctaaa-acaaaactGTGCCAATCAAAGGGATTGataataaacataatgaaattCAGCTGAGTCCCTACAAACCAAGAAAGCCCTTGGCTGACTCTGTTTGTGTGACCTTAAACCAAGA-AGGCTATGGGAATCTGTTCCTGTGGTGCTGACTTTGCACCTCTCTACTGCCCTTCAGATGCCCACTTAAcctcatttctctctcattgtgGTTGCCAAAACAGAGAAGCTCCTCC--------------TGGCCCCAGGAGCATTAATCAACTTTCAGCCTTCTCCAAGATCTG-CTGGGGAGATGCAGCACCTA----CTTAATAAACTCAAACTGTCATTAAAGATGGACGATAAGTCTGCAAAATCTTGGAACATCCCTACTTTCCAGCTCTCCAAgtacagagaaggaaacagagCAAGGACTCGGGAGA---ATGTCCTCC--------------TGGGT-GATCAGGAAAGTCAGCTGCCTTCTCCTAGTCTCCTCCTCCCT-TTAGTTCTTCCTCAATGATA---CCACCATGTCTGCAGCACAGTGAGACTGTTCAGCTT-----TCCTTTATTCAGCACAACAATTTGGTGTGTGTTCTGTAGTGCTGACATATTCTTCTTGCAGAGAGTGGTGTGTGAACAGTGTTTTCCAAGTTGGAAGTTGCAGTAT--CATAAGTAGGAACAGACCTCCCAAAGCCCCAAATACTATTT-CTGCCGGAGCTGGGAAGATCAGCAGGCTCCTGTGCGGACACCTACAGAA-TCCTCAGAAGCAGCCCTGAAGCA-CTTTGCTTACTCACTTCCCCACCC

a score=45137
s chr3           105330176 1548 + 160039680 AATGCCTGGGAAGCTAACTGCTATTTACACCACCTGACCCCTGAAACCC-------TTCCAGCAAGTAGCTGGTCTTAACAACTACT-TTTACAGAGAAATTTCCAAGGGCACAGCATTTCGCTAAGTACTTTCACAGAAATCGTTTTCTTTTCTTCTGttttaccttcacaacagtcttatcagacaggttgattctagcagtcacaggagggagaaatgcaaagcacagagtagctgaatggtttggtta--gtgacacagtgagtgacttccagcagcaaagtcaaattcagctgtgtgtctatagattctaaatcccCTTCCTGAT----------------------GTGAGATGTCACGAGAGCAGAACACCTGCCCAGTGCTTATCGTGTCCCAGGCTCTGTGCTGGGAAGCTTCCACATCGCATCCA------------------------------------TGTCACCATGATCTTGAG-------------------------------TCAACCCCTCC------------------------------CTTTCTCCCTCTCCCCCCACCCCCATTTCTAAGTCTGCATC------------TGTCTCTTTCTGTTTCTTTCCCAATTAATCATGTGTCTTTTGCAGCCAAGGTTAGACTCTTA-----GCATTCCTAACAGATAATTTATTCGATGTGCCTTGCTAGGTATTTGGCACTCAGAATGTAATTGGATCATGAGACTCCCCACCTCACTTCACCCTCAAGGCAAGCTTCTTGTTTATTGGTTTGCTTTTGTTTTTGATCATTACTTCAGTCTCCTCTTTGGTAAGAAGAAAGGGGACAGgttttgtttgttttcttttgttttgttttTTCTCAACCACATAGCGGGAAGAGGTGTCCTCTCTTAAATATGGTGGCATTCCCCCTCTTCTGGGAATTGTGCCCCATGGATGGTCTAACCCTCCCCTGG-AGGGATGCTGAGAGAAAGGAGTTGCAGGCATCACTTCAGGCCAGTTCGGCTCCTTTCTGGTAGAATTAAGGAAAGGGAAAATTTGCAAGA-----------GCTTTGTTTTCTCCCTTTATTCTTGTTTTGCAAAGAAAGGTCCCCGCTGGCCTTTTAAGCCCAAGGAAAACTTAACAAACACTTTGTGCAATCCACCTTGCTTTTTACCTTGAATCAAATAACCTCCCCAACTCCGGAGCTTTGCGGTCCAATCCTTGCAGAGGAGGA--GCAAGGAAGCAGGATATTGAGTCTCATTAAGTTTCTTTGCTGTGTCAGTCCTCCCTCCCAGAGGGCGAGGTAATGCTCTCTTCATAATACTCATCCCTGTGCACAAGCTGGCAGCTCCTTTCTGGCAACTTACACTCTTGGCTGAGAATGTGTTCACAGGGATTTTGAGAAAGCCTCCCCAAATACCTGTTTTCTGACTTTCTCTGAGCATTTCTGGAGATAGGGCAAGGTTGTAGCTGCTCTGAAGTCAGTGTGTCCTCTTGCTAAGGAAGCTCCTAGCTCAGTGCTCTTCCCTGGCCTCTCATGAG-----GGGGTGAGTA-------GCCTCCAGCTTCACATACCTTCCTTCCCTCTGGATTGTGGGACAATG-CCTCTGTAAGCAATGATTGTAT--CTGACCGG---------TGGTCTCAGT-CCTCTTTTGATCTCCTATCCAATGCAAACCTTAGTATTTCTCT
s HiC_scaffold_1 115941351 1600 - 233722169 aatGCCCAGGATACTAACTGCTCTCTATGCCCTCCCATCCCCAAAGCCCAAAGCCCTTCCACCAAGTAGCTGGTATTAATAACTACTATTTACATAGAGTTTTCAAAGGGCAGGGCATTTTGCAAAGCATTTT-Acagatattatttc----------attttacctTCACAGCGATGCTTTTTGATAGATTGTTT----------------------ATTCTAAGCCAAGAG--GCTGAATAATTTGTACAAAGTCATGCAGTTAGTGACTACAAGTGGCAAAGTTAAACTCGAATTCAGGTCTGCAAATCCTAAATCCATTTTCTCACCACCTCTACACTGCTACATTTGgggcaatttaaaaataaataaacatttgct--gTACCAAAAGTATGCTAGGAACTTTCCTA-------TTCACCTAGCAGCCACCTTGTTTCATAGGAGAGGAAACTGAAGTCTTAGCTTGTca----gaaattgagacctgggataTGAATACTGTTTGACTAAATAttaatccttccttccttccttccttccttcattctttccctctttcttcccttccttccctccttccttcttc-tctgctTTATCTTCCCTCAGTGTCTCTCTTTATT-CTTTCGCAATTAGTCATGTATTGATT-CAGCTAAGGTTAGAATCTTATCTTAGCAGTcttaagaaataatttatgcATTGTGCCTACCTCGGTATTTGGCACGCAGAAGGCAGATGAATCATGTTACTCTCTGCCTCACTTCACCCCCAAA-----CTACCTAGATA-------------AGTTTTTATCAcagcttccctcccttccctgg-aaatagaaaaagaacag--------------------------ctCTTTTCCAGCCCATGGTAGTGAGATATGTTGTCTCTTGAACTTGG---------CCCTGTTTT------------TCCCTGATGGTCTAGCCCACCCCTTTCAGGGACACTCA----CAAGAGCTAATGGTATTATGTCAG--CACTGGGGCTGCTTTCAGGCACAGCTAATGAAGGGAAAACTTTGTAGGACCTCCATATGGGctttgttttccccttctttcttgtttttgcaaAGAAAGGCCCCTTCTGACCTTTTAAGCTCAAAGAAAACTTAACAAACACTTGCTGTGAACCACCTTGCTTTTTACCCCTGATCAAATAACCTCCCCAACTCTGGAGATTTGTGATTCAATCCCTGCAAAGGAGCAATGAGAGGAAGCAGGATATTGAGTCTCATTAAGTTTCTTTGCTGTGTCAGTCGTCTCTCCCAGAGGGGGCTGTAATACTCACTTCCTAATACTCAGCCCCTTTCACAAGTTGGCAGCTCCTTCCTCTCAACTTATATTCTTGGCTAAGAATGTATTCATagggattttttaaaagcctCCCCAAATACCTGTTTATTGACTTTCTCAAAACATTTCTAG-GGTAGCATAGGGTTGTACTGGTTCTGAAGTCA--GCTTTCTTTTGCTAATGAGGCTCC-AATTCAGTGC-CTTTCCAAGCACCCTGTGTGGATGAGGGGTGGGGAGAGACACGACCCTAGCTCTGC-CCCATTTCTTTTCCCTGAGCT----GACATCATTCTCTGCTAATGAGTTTTGTCCCACTGTCTGGGCACAGCTTTGGTCCAGATGCCTCCCTTAGTGTCCTGCTCAGATCAGGCCTCATTGTTTGTCT

a score=55719
s chr3           105332727 4569 + 160039680 [encoded data, 4981 characters]
s HiC_scaffold_1 115943011 4324 - 233722169 [encoded data, 4981 characters]

a score=42078
s chr3           105347888 1732 + 160039680 ttcttcttcttcttcttcttcttcttcttcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcatcttcctcctcctcctTCTTTGC-----CACCTCTTGATCTCTATCC-------TTCACCTGCTATGAAAACT----TCAGCCCAGGACCACAATTTATCTTAGTCACACATGCCT----TAACCTAAAGCTGGGAAAGAGTGTTTACTTTCCTAGGGGTTTGGTTACACCAAACATTTCCTTTTTCGTTGTATTAAAGGCTTTGGTCCTCATTAAAGGGGGTTGCGCATTAGAAG-----GCAG-GAGTG-AGGGGCTCTGAGAGACTGA---TCCTCTTCTCAGTACACAG----AAATGTCTTCTGAGA------------AGGGTGGAGGCTGCTTCTGCTGGAACGGCAGCTTTTACCTG-TGATGGGACAAACAA-AGCCCCCTTGGAGTCACTTCCACCTTAGGCATAAGCCCAAATATCCATC-CTCTAGGAATATAGATACATTTTTCA---TACAGCTATTTTCTAACTCCTGGTATCTTCCATAAGCAGAGTATGGCACCAAGGCATTGATCTAGAGTGACATCGATCTAGAGTGACATCACAGAGTCAGCCTTTGAAAAGCTCCCTCTTTTGCTTTTTTGTTAGTTTTCCACTTTTTATACTTCTTTGCTGGTGTAAAT-TGGATGAAATA--GCATAAA--CTCGTGGATAAAGAAAATTGTTAGTAGA-AACACAGTCCTACTTA-CTGCCTTCTTCCAAACTCTAATG-----GTTTTCCTTTCACTCCTTTACTGGGGACAGTGATGCCTGAATGACTGAGGCACTTTAATTGAGCATAA-CATGGCTGGATGCTTTGCAGTTGAGGATTTGAGACTGTGGTTTTGTGTAGACCTTTTCATTTAAGCCTCATCTTCAGGCAAACAACTGTGTTTTGGGAAAGTCCTGTTTCTCTAACCTTGTTCTAAGCATTCTTCTATGTCAAAGGATGAAAAATCTGAGCTGACACTATGTGGATTATTTATATGGATAAAATCCCACCAGACTTCCCATGATGTACTGCAAGCACTTGCTATTCTACTCCTCGAGTCCCAGGAAAACCAATTGGAGTTGACATAGTAATCAGTTCCCCCTGAGAACATGGCTTCTTTAAAAATGTTCAGTTGCT--GGTGGAAAAGACTGTGGAGCACCAGGACCAGTTTTTGA-------GAAGCCATGACTCTG-AGGCCTAGGCCAAACCCCCAATTAAAGCTCTGAAACAGAATATGAGCTAGGCTCAAGCTTCATTCCACGCACAGCTCATATGGGTTTCTTTGTCTTTGAGGGGAACTTTAGCATCAGGGAAGCCAAGAATGATGGAAAACCTGTTCCTAAAAGCAGGACCTTGGGGGAAAAAACCTCATATAG-AAAGCAAAATTT-TTGGAATAtt-tttcctgattatgaaagtaatataaatccactgagaaaatttgaaaaataaacagaggcttagagaagaaaattaaaattactcatcatttcatctaaccctgtcattctaata----tttttgagttctttgtatttttttctaCAAAATGTAATATTAGCACATATACGATTTTGTGCCTTGAGTTTTGTACTTTATGTAGTACTGCTAATGTAACGAGTCTGA-----------CAAACTCATTGAGGTATAAACATAAGATG-CTTTTACTTTACCAATGATTGTGC-------ATATTAtattgatttcttttcttgctgctgtgacaaaatg-----cctgacaagaat--aatctaa
s HiC_scaffold_1 115948386 1768 - 233722169 ttcattttcttccttccttccttc--cttccttccttccttccttccttccttccttccttccttccctccctccctccttccttccttccttttttcactTGGCAAATacatcttttcttcttcagacATGTGACCTCTTCTAGCATGAAAACTCACCTCAGCATGGGATCTGAAATTAGGTTAGTCACTTGCACCTAATGTAACTGGAAGC-----AATTGTGTTTTCTCTCTAATTGACATGGTTACAG-----ACTTCCCTTTTAGTTGTAGTCAAGGGTTTGACTCTT-------GAGATGGTAGAATAAGGGCTCTGGCAGTGTGTGCAAAGGTTCTCAGGGACCAAAAGTTCTCTGTTTA-CACCCAGTTGTAGATGACCCCAGTGACCTTCATTTGCCAAGTTTCAGGAAAAATTAGTCATAAAGG-AGGTTTGATATGATGATGAGAAATATTTtggtcttctctctctctctctctctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgcctctgaaTGTTCAGTTGCTT---------------CTTCTAGAAGTAAAACAGGGTACTCAGACAGTTTTCTGGAGTT---TCAGAccagaat------------------tttgaaaatttctcttcCTGGCATCCTGCTCATCTTGCTTCTTTAAAGACCT---TGTTGATGTACACATGGATATAATATAGCATAAATACTTGGAGATATGTAAAGTTGTTAGCAAACAATATGGCTTTATTTAGTTGCTTACTCCCAAACTCTGATGACCATGATTTTCTCCCACCCATTTCTCAAAGCCATTGGCAATTGGTTGGCTCTGGACCTTTAAGTGCACCTGAGCACCTTTGGAT---CTGTCATTCAGGTATTGGACCAGTGGCTTTCTGTAGAgcacttcatttaatttttatcttgaggCAAATCGCTGTGCTTTGGAAAAATCTGGTTTCTCTAAGCTTGTTCCATGCATAGTTCTATATCAAGGAATGAAAAATTGGATCTGACACTGTGTGGGTTATTTATATGGATTAAATCCCACCAGGCTTCTCATGATGTACTACAAGCACTTGCTATTTTGCTCCTCTGGCCCTAGGAAAACCAATTGCAGTTGACACAGTAATCAGTTGCCCCTGAGAACATGggtcctttaaaatttttcagataCTCCAGTGG-AAAGGCCATGGAATTTTGAGCTCAGACTTTGGCCTCTGTGATACTGTGAGTCAATACACCGAGG--ATATACTGAAGTCAGCATCTGAAATAGAATTTTGGTTAGAACAATGCTTGATTTCACCCCAAAATAGGACTTCTTTCCCTGTCCTTGAAGGGGACTTTAGCAAGAGAGCAGCCACAAATGATGGGgagactgcctcaaaaagagaggttttaggaaaataaa---cagatagaaaagtaaaatttcctTTACTATTGTTTCCTGTTTATAAAATTGGTATATACCCACTGAGGAAATTTGGGAAATACAGAAAAgcataaagaataaaactataaTTACTCATCATTTTATCTACTCATATAATTCTGGTATActttttttagtcttttgtatattttt---caaaatgaaaacatatcatATATAGAGTTTTATGTCTTGAATTTTATACTTTACATTATATCATGGATGTAACAAGTTTGCTTATAGTGACTTAAACTCATTGATGTGTGAACATGGAatatcttttacttttgcagCAGTTGCCCTACTACTGTCCCATGTCAAATCTTCCTTCTCTCAGTCGGGCAAAATGGTACTCCTGACAAGAATTCAATCCAA

a score=77439
s chr3           105352389 4491 + 160039680 [encoded data, 5057 characters]
s HiC_scaffold_1 115953570 4434 - 233722169 [encoded data, 5057 characters]

a score=33589
s chr3           105358890 1246 + 160039680 aaaacgggctaagtgaaagaagtggacacacacccacacaaga----tcacacactttataatttcattctatataaactgtccaaa-taggcaaacccagaga--cagaaaatagaccaatgggtccccaggggtgtcag--gaaggaggagaaagatactgttcag-tggaaacaggtttattctggaactaatagaagatgttttgagacttgacatagatag-tgctacacaacattCATACTTT-AAGAAACAGGATTTTCAATTTCTTTTAGAACCTGGACTAGGCT------GGAGTAATCCCACCATGCACTGGTCCTCAACCAAGAGGTTCTATG---GTGATTGCCTTAAGACTCTATGCTGATACAGGGCAGATTCCCCACAGAAAGGCTACACTGCATCCCAGAGGGCCTGTTCCTGAAACCTTAACTTGTGGGGCCTATG---GCTCCAGGTCCCCTGAGAGCAGCCCTGGTGACTCTTCCCTACGGCAGCTCATAGCCTCCTCCACAGCTTCCGTAGGTACAAGGCTACAGTGATCTATGTGAGGAGTTGCTACTGGCCTTGCATTTCAATCAGAAATCAGAATGTTAAAACTCTCGACTGCTTTGGTTGCTGTCACTATTATTAATAGATTTCTATCCCTTCTGCATTCAATTATTATCACTGTCACCAGCACGTGGCAGGGACAGTTTCGACATGCCTGTTAAAAATGTCAAGTTTATTAGACACTCACTCAAAGCTTAGTTAATTCTGTTGTTTGGTTCTCTACTCCCCCCACCCAACGCTTGTCTTATTTATTTAATTTTTGGTGATGTGCTTGTGGCTAGCCTAAACATATGGGCTAATTTTACTCCCTTGGAGTTAAAATACTTAAATGAATTCTACAGAGATTCATAGCTGGAA-GAGTGTGCGAGGGGCAGGGCTCCCCTGAAGTTGGAAGAGAGGGGGTGTCTGCTGGCTCTACCAGGCTGCCATCTGCTGGGCCTGCCCCTGGGGAAAACACTTCTCTTTGCTTAATCAATATAAACTGCAGGGCTCCTGGCTTTAGGACTTTGGTTTCCATTTTCCTTTTGTTTGGGGAGGAATTGTTTCTCTCTGACAAATGGTGTCCTCGGGAATGTTCCTATGTGTGTTATTAT--------GTCCTCCA--GAGAGGCTCTGTGCTG-------ACACTCACTTTGCATG--GAAGCTTTCTCACTGTCCCTGGCTTT-CTGGTAGATGTTTGCCTGTTTGTTCATTTAA--AATCCCACTAAGAGTAAAGAGA
s HiC_scaffold_1 115958099 1202 - 233722169 AACACTGTGTAAGTTAAAGGAG-----------CCAGACAAGAAAGTTCACACATTGCAAGATTTCATG-TATATGAAATATCCAAAATAGGTAAATCCATAGAATCAGAAAGCATATTGACG--TTTGCAAGGGTGGAGGCAGAAGCAAAGAGGAGAGACAATTTAACTGGTAAATTGTTCACTTTTGAGGTGACAAAAGACATTATGGAACTTAATATAGATGTCTGTTTCATGATATTCACGCTTTTAAAAAGTAGTAGTTTTAAGCTCTTC-AGA---TTGACTATGCGAGGGGAGGAAAAGGGACAGCATCCGCCGGCCA-----CAGCAAGTTCTGTGTGAGTGATT--CTGATGACTG-----------------------CTACAGAAAGGGCACCCTACAGCCAAGAGGACACCCCTGAGAAATCCTAACTCCTGTTGCCCCTGCATGCCATATCTCCCAGGAGAGAAAAATGGTAGGCTCTTTCCT-CAGGGACTCAGAGCTTCCTTTGTAGCTTTTCCAGAGGCAAGGCTGCAGTAACA---GTGAAGAGAGGCCATCGACCTTGAATTTAAAACAGAATTCTGGAT-TTAAAAAGCTCAACAGCTTTGGTGGTTGTCACTACTTTTAATAGATTTTTCTCCCGTATGCATTCAATTATTATCATTGTCATCAGTACATG---GGGGAAATTTCAACGTGACTCTTAAAAATGTCAAGTTTATTAGACACT--CTCAAAGCTTagttaattttgttgttt-gttctcTACTCCC----ccttatttttatctaatttatttatttttcggCTGTGAGTGCATGGCTAGGCTAAACATATGGGCTGATTTTTCTCCTCTGGTTTTAAAATACTTCAATGAATTCTGCAGAGGTTCATAGTTGCAATGTGTGCAAGAGGGGCAAAGAACCCCTGAGCCTGGGGGAAGGG----CCCAGCTAATCCCA-----CTGTCAGTCGCTGGGGCTGCCTCTTGGGAG---ACTTGTCT----CCAGCCAGTATAACCCACAGGCCTCCTGGTCTTGGAGTTTTGgtttcaattttagttttgttt-gggaagaattgctttcctacCCCTGACAGTGATCTCCAGAGATTTC--AAATGCATCATTATTGACCTTAGGTCTCCAAGGAGAGTTTCTGTGTGGTCTGCACTCACCCACTTAATATGGCGAATACTTCTGCTTGCCTTCATCTTTCCTGGTACAGGGTT---------TTCAAGGAAATAAGCCCATTAGGTGAAGAAAGA

a score=36070
s chr3           105362424 3394 + 160039680 [encoded data, 4390 characters]
s HiC_scaffold_1 115962527 4135 - 233722169 [encoded data, 4390 characters]

a score=107396
s chr3           105366570 4225 + 160039680 [encoded data, 4749 characters]
s HiC_scaffold_1 115972139 4159 - 233722169 [encoded data, 4749 characters]

a score=39970
s chr3           105371988 1407 + 160039680 CTGATGCACTTATCAGTCCAGCCATTTTACCAGAATCTTCTATGCCAGCATATTCTTACATCATAAAAGATGGA--AGTCACCATGTAGGCACTCAATCTCTATTGATAATGATGACAAGAATAG---AAAACGT-----------TTGACTTTGCACTTTACAGAAA------------CATCTTAAAATGTGTGACCTACCTGAAAGA--CAGGTTCAAGTTGACATTGAACACCTATGAGTCTATTCTCACAGGACATACTCAAGGATGCTGGGCTTTGGGTTAAGCCTGTAAGGAAGATATTTGGGGGTCAGTGTCCCTTCCCTGTATTGTACATCATTTCCCATGCAAGAAATCATCTACGAGTCCCATGGGTTTGGCTCACCCTGCTTGCTCACACAAAACACAGATGCCAAGACACACACGGTTGCACA-AAGGGTCCAAGTGCACACAGTTAATGTAGCATAAATTACTCCATGGAGATATGTAGATTTTGTGTGGCCTGTTCTATCAGGCAGGATTACAGCTCCTTAAAGCTTGGAATCTATTCCCCTTCACAGGCCACTGGACAGCTTGCAATGAAACACACGGCTGCCTTTTGTTTGCCTTGGTGCCTTGGCTCTTATCCCCAGTGTGGCCATTCGAGCTGTGTTCCTTTCATCTCAGACCCCTCCCCTTGCCCTCTTTTCTAGTCTCTTCCCCCCAGGTCTCTGGCTTCTTCATTCTGTTACCACCAGTAATCACGGTCAGGAAGGATCAGGGTCAGGCACGCTCCTAGCCTTTCTATCTCCACCTGGCAGTACTAGCTCA------GTAAC------------AAGAATTGCCCAGTGGCTGCCGCATGGGACAGCTGTACTCTTGGCAATGCATAGAGAAGGTGCCAGAATGAATTGCAGCAGGCTGG-ACCTAAGATGACTGGTCTCCACTTAGTCCTTGACTTGCCATTGGGAGGCACAGGGTCCTTAAG-GCTGCAGCT-CAGTAGTTATGCCATGGTAGATCCAAGGCAGCGCCTTGGAACCAGCCTGGCATAATGTCTTTTACCTGAAACACAGTCAAGATAACTGATCCTGG---GCAAGAG------GGTGCCTTCCCCAATGCCAGATAGATTGGCAGATAGAGGTGA--CCTTAGGCTCACTTCTCTGAGTGCTTATAAAGTTAAGAGTGTCATTTCTCAACGCCGCTATTAGGAAATTCGTATGAAAAA-------TTAATATCTGAACCCAGTGAACACACAGAAGTGTTTGCTCTTGCCTCCCACCCTCCTCACCTTGCCCCTACCTCCCACCCTTTCACCTGACCCCTACCTCCCATCCTCCTTGCTTTGCCCCTGCCCTGGGATGGTCGTTGGGAGGATCAAACGAGCATCCTCTAAACTGCAAAGTATATGCAAGTGATCATTGTCGGTTTATTAGCACAGCAGCTTGTGCATTTACTGTGAAAGCCC
s HiC_scaffold_1 115976623 1328 - 233722169 CTATTGTACTTATCAACTTGGCCTGTTTCCTGTTCTCTTCT--GCCA-CCTATTCCtacattttaagagaaaaataattgacACAGTAGACATTCAATTTTTACTGAATATGTTGATAATGATAGTGAAAAAGATAGCATTTATAGTTGACTTTACATCTCATAGAATGTGAATGCAAATTGCTATAAAATTTCATACctaactgaaagagtaagtatcAAGTTCACAATGAACACTTATGTCTCTGAAATAGAAGGACATA------------AGGCTTTGTGTCAGGCCTTTAAGAGAGATGTTTTGGGGTCAATGCTTCTTCCTGGTACCTCACATTATTTCCCAGGCAGGAAATCTTCTCTGA-TCTCATGGGTTGGGCTAGCCCTACCT-CTCTCCCAAAACACAGATGCCAAGAAACACATGACTGCACATACAGAGCAAAGTGCACACAGTTAATGTAGCATATATTACTTCATGGAAGTATGTAGAGTCCATGTGGCCTGTCCT-TTGGGCAGGATTACATCTCCTCTAAGCTTTGAATCTATTACCCTTCACAGACCATTGGACAGCTTGCAATGAGACACATGGTTG-CTTTTGTTTGCCTTGGTGAGTTGGCCCTCATCCCTACCATGGCCATTCAGGCTGTGTTCCTCAC-TCTCATACCCCTCCCTTTGTCCTCTTTTCTAGTCTCTT-CCCCCAGGTCCCTGGCTTTCTCATTCTGTCATTACCAGCAGTCAAGGTTAGGAAGGAGCAAGGGTTGGCA--TTTACAGCATCTCTATTTTCACTGGGCAGGGCTGGTTCAAAGTAGGTGACCATCAGGTACAGGATATTTTCCCAGGAACC----CAATGGCTAACCACACCTCTGGCAATATGAGGGAAGGGGGCCAGAATGAACCACAGTGTGCTGGCCCCTGATGAAACAGTCTTTTGATCACTCATTTACTGGGTGATGTGACAGTCAGGGTACATGAGAGCGGTAGCTCCCGCAGTTGTGCCAGGCTGAGTCCA---------TTCTGAGTCACCAT----------------CATGAAGCAGAGTCAAGACTGCTGCCTCAGGGCAGCAAGAGAACAGCGatgcctgccttggagctggacGAACT-GCAGACATTTGCCAATCATTAAGC-----TCTCTGAGCATCTGT-AAGTTAAAATAATCACTTCACAAGGCTGCTTTGAGAAATTTCATGTGGAAAACTAGAGCTCAACATGCACACTCAGCTGATACCCAAAAGTTTTTG--------------------------------------TACCTTTTTAAA--------------------CCTTGCACATTCCATATCATGGGA---TTGTTAGGAAGAGC----------------AATTGCAAAGTATATATGAATG-------------TCTTAGAACAGGGGTCTACAAATTCTCTGTGAAAACCC

a score=78189
s chr3           105373399 3394 + 160039680 AACCATAAACCAGGGTTTTCT--CAAAAGATCATGAACTATTAGATCTAGGGACTAAGGAATGCAGGCAAATGCCAGCGTGCTTAGGTAACATGAATGAGATGCCCAGT-----------------ATAAACAAACAGGCCA-----CAATTGGGTCCAGTGCAACAAGCAGTATATGAGCTAAAGAAAACTGATCTAGAACATGCATAACACTGCAGAGCTATAGAAACAGTAGCCTCAAGGCTTTTTCTGAggggtgatgatgtagctgagtggtcaaacactttactaccatgcacgaggccctgggtttgatccccagtaccacaagaagaAGAAATATGTTCCCCGAGAACACAGGGCCATGCAAGGAAAGATTTCTGCAGAAGGATGAGGATTTTCTGTGGAGACTTTCTTCAGTTCTCCTGACAATAGGAACGGGCTTGTTCCTTGTTGCTAAGGA--GTTCTGGGTATTGTGGGATGTTCAGCAGAATCCCTCATTTCTACTCAATAAAACCCACCAGCCCTACCCACCCCAGGTGCTAGCATTCAAAAGA-----CAAGCCTT-----------TATGAGGCTCACAGTCACCCACACTGAGAACCACTGCCTTAATCCCCCAGGAGACAGAGGAAAGAGGTCAGAAGAGGATGCCTCTGGATGCAGACCATCTCTGGATGC--AGAGATAGTGCTTTAGCAGCCATTAGCAGGCAAAATGCTTTTAAATAAGCAAATTTTAATTTAGACCTAAATCTCCATTATTGCCTGAGGCTGTAGGAAAATTGGTGACCATTTAAAATTATTAATTGGAGCCTGCTGCAAATCAGTGGAGGGTGAAAAGCA-GAAAGGGTCTGGATGATGAACAGAGGGG--------GAGGGGAGAGGGCAGGAAACAACTGGTCCAAACTGACTGAGGTGGGACCTCCTTACTGGGAGCAG-GGAGTCCTTCCAGGAAACCAGGCAGCCATGTCACAggggtggggtggggtgagggtggggtggggtggTGGCCAATCTAATAACATGAAAGAAATTGAGTTTCTTGGGTTTGGAAGCAAACCCCAGCTGCCAGGAGCTCAAACTCCAGTTCAGTTCTGTGGGGGAAACATGGCATGTCAGCA-GAAGCAAGCTCCCCAGAGAGCA-AGGGATGAGTTCCAACTCCAGCAGGTGTTTTCCTAAAGCA-CAGAACAGCTTGGTGCTGTGCTTTTCAAACCCTATTTTGGTGGATGAATCAATTCCTCC--CTCATTAGACTGA-------ATGAAAGGTACTGATGTG-------------GGTTGAAGGTCTGCATGCCTTCCAGGTAAGCT-CTGGTGGTGGGCTTTAGAG--CTTGAAGACGTGGAGGAAGCCA-GTGAAGATTTGTGAGAAAGAGACGGTGATGGGGGTAGGTTGGCAAGGAGCTTTTTGGGCAACAGAGGGGCTGCATCTGAGGAAGAAGAGCCTGGGGAGGGTCCTCTGGCAA-AATGGTGAGGACTGAGAAGAGT-------CCAGAGTGGAGAGGCAGGACTCTGGGG-------------------------------GATGT-------------------GGTCTCAAGCTTGCTGTGTGCCAAGC-------AGTGGATCTCTAATAAAGCAG----TTTCTCTTTTGAAGAGTTTTTGCTGTGGACACTTGGGGTCAAGAGAAGACAGCTTAATTGGCCAAGTTAGAACAACACATTTCCTTCACTCCCCCTCTCTCCTTGGCCCTGGCTTCTGGCCACTGAATGTTT-----GGAGAGGGAGGGAATGGA-------------GACC--AGTGTGTACCCTGTGTTCTGGGACTC------AGTAGAGGGAGACAGAAGCCCACCT--------------------TCCATCCCACAG----------------------GCAGAGTGGTGACAATAGC----------------------AACTGAATCAG-----------------------------------AGCAAAGTAGTGACACCTTC--------------------------------------------AAGGCTCT------------------------CAAACCAG-----------------------------------------------------------------GGAGCTACAGGCTTTCA-----------GGGTGGCTGGCATAGTCAATGTTGCTTGTTTTAAGAAAGCCATGGCTGTAAGTGCAAAGTTAGTGAGGATTATCAGTGGGTGTAGCTTGGGCCAGACTGAGGACCCCGAGGCTTT-TTTGAGACGTGTCAGAAAGAGGAT-----CACTGCTGTGAATCTTA-----CCACCCATCCACCCCAGCCT----------CTCTGACCTTATTTTCCTTTGACAAGGCACGCATGGTCTTCAATAATGCAGGTTCC-ACCTAACACAGAAGAAGCCTGTCACCCAAAAATAACTTGAAAAGCATACAGAGGAAAGCAGATAAGCATTCAAAATCATTTATTTATAGCACAGAACACAAAGC-GTCAAAGAGACTACAGGCAAGCCACAGCCACAGCACCCTTCATGAGGGCAGCCGGGAGCCTCTCCCACCCTGCCGAGCCGGCTCAATAGAATGCTTCCAGATGTGGTCTGCCCATGGTGAGCCTGCAGAGAAGAGGGAGATATGTATGGTAAGGTACAAGAGGGAGAGAATCCAAGATGGAGAAGACAAGATCTCAGTTGAGTGTTAGATTAAAAA-CTCCAGCAAGAGCCTGGGGGGACTAAAGA---CCCTATCATTGGAAGGGTCGT-GCAGAAGCTGGGGACCTGTTAGGATACACTGGTGAGACACCTACGTGGGCTGGGAGTGT-GGGTGGATCAGCATTTTCTACCACCAGTTACCGCTAAGAAAAAGAAACTATA-CTGACTGGTATATCGTTCCTTCTCGGGGAG---------CGGCTTGAGCCCTCTCTTGTCTC--TCTTTCTCCTGACCAGCTCCCTTCCTGCCCATGATAGAAAAGCCTGTCACCAGCCCTGATAGAACACCGAGCACCAGACAACCTCTAAATCCCCTGCCA---------GCCTGAGATTCCAGAATGGTCTAGCACTGGAGACCTTAGAAGTTGGGGGAAAAGATCAAAAAGTGTGTTGCATAAACAATTATTTCTGAGGAACAAAAGGGATGAGAAATCAGAGAATTTCAGACTTTTAGAACGGAATTGCTTCTGCAAGAATTTCAACAATAAAAGTACTTTTATAACTCCAAGTGTGTATTTTGTTACTGAAAGCCAAAAATAATATACTGGCTGATCAAAACTGACAACACCAACCTCAAATGTCACTGAATGCTGAA-AACATGTACAGCCAGATCCGAATTAACAAGATTCTATCTAGACCGTCAAAATATATGGCAGTTTGGCTCCTTGTCACAGATGGTCAGT-AATAGCTTCAAGGCTAGTAAAGCAGCCAGTCGCAAAAGGAGAGCCATGCCCT----------TTGCCACCAATACCCCCCCCTCACCCAGTGTGATTACCTCTAATGCCAGATGAGGTGCCAAAAACAACAGTGGTGTGTGCAGGCAAATTGAAGGCCTTCGTTGATCAACTATG-TGGCAATCAGTACAATCCAGAAACACATGCAAGATGGGAGGCCCTGGAATCTGCAAGGCTAAGTGTGATATTTTCGT-CCATTGTCTCTACACTTGCAAGTCTCTGGTGGGCTGCTTGGGTGCTTTGGTCTGAGCCAGGAGAACAAGCTGAACAGAGGGCAGGTCCTTATTTTCCGGGAGCT
s HiC_scaffold_1 115978696 3572 - 233722169 AGCTGCAAACACAGATTTTCTTGCAAAATCTCTTTAAATATTGTACCTAAGAACTGGGGA-TGTTGCTCAATAGTAAAGCACTTGTCTGATGTGtccgaggccctgagttcagtctccagcatggcataaataaataagcaagttaATAAATATTGCAATTAAAATGAATGCTATGTGGACCAAAGAAAATAGATCTAGAATA-GC-TAAGGAGATAGCTTTGTAGAAACAAAATCATCAAGACTTATTCTAGA------------------------AAACACCT-----------GTAAGGCTGTG-------------------CAAGAAA---------GTTTCCTTGGAA-----------------------TTTTGCACA--TACGAAAATTCT----------TTACTACAGCACTACTGACATCTGGGGCCC-CTGACTTTCTGTTGTGAGAGACTGTTCTGCATATTGTAGGATGATTACCAGGATCCCTGTCCTGTGCCCACTAACAGC-AGCAGTACTGTCTTTCCCAGGTAGTAACAAGCAAAAGCATCTCCAGACATTGTTTAATGTCCTCTGAGAAGCAAAATCACCTGTGTTGAGAACAGGTG-------------AAACGCAGGGAAAAAAAGCCTGA-GAGGAAGC-GCTGGATGCAAGCC---------TGCCAAGTGATGGTGCTTCAGCAGCGATTAGTGGGCAAA-TGCTTTTAAATTAGCAAATTTTAATTTAGACCTAAATCTCCATTATTGCCTGAGGCTCAAGGAAAATTGGTGACcgtttaaaattattaattggaGCCTGCTGTAAATCAGTGAAGAGTGAAAGGGATGGAAAGGGCTGGATAATGAAGAGTGGGGAACAGTCAGAGTGGAG-GGGTAGGGGAAGGTAGGGCAAGGCTGGCGGCAG--------ACTGACAAGGAGCTGTGGAATCCTGCCAGGGAGTCTGGCAGCCACTCCACAGGGACAACTGGCGCAAAGGACCCTATGGGGAG---------------ACATG--------------TCCAGGGTCCTGAAGTTAACCCCAGTGGTCTAGAGCTGAAGCTCAAACTAAGTTCTGTGAGGAATACG----ATGTGAAGATGACATAAGCTCCCCAAAATACAGAGGGATGATTCCAAAGGCCAAGGGGCAGTTCCCTAACGCAGCAGAACATCTTGGTAGCCTGCTTTCCAAAAT-TGTTTTAGTGGGTAAATCAATTCTTTTGTCTCATTAGACTCAGAAAGCCATAATAAATACGGATGTTTCCTCAGAGCAGTGGCTAGCAGTCCAGATTTCTCCAGGGTAAAAAACTGGCTAGAAGCACAAGAGGCCTGAAAAACATGAAGGAAGAGATGTGGGGATTTG----ACAGAGATGCTCA------------GGCAGGGGAGTT-----------GAGGGGA-----CAGTGGCATGAGTGTCTCAGGAAGGGTCTCTGGAGACAAACATAAAGAATGAGGAAAGTTAACAAGCAGGGGTAGGGAAGCAGGGTATTGGGGCTTCCAGATGGCAGGGCAGGGATTGGAAGAGGATGTTCCTCTCAGGAGGAGCAGTGGTCTTAAGctgtctgtgtttttttttatcttaagtgAGCCCCTAGTATCTCAGGGGTTTCCTCTT----AGAGTTTCTTGCATGGACACTTGAGATCAAAAGAATACAACTTAGTTTGCCAAGCTAGGA------ATATCCTT-AC----------------AGCCTGGATGCTGGCCACTAAGGGCCTCCTAGGGAGAGGGTAGGAAGGAATGGTTTGAGCCTCGACCTTATGATGGGCCCTCAGCACCCAGAGTTGCCCAAAGTAGGGTGAGAGAAAAGCTCACCTGCTAGTCCTCTAACCagagtcccattttacagataaaagtaTCTGAGACACAGGGGAAAATGCTGGcaagtgcctgtaatcccagcactctggaaagctgagacaggaggattgcatgttcaagtccagcctgggcaactcagtgatgtAGAGACTCctcttctcaaaattaaaaagcaaatggctgaggatgtagccctgtgcaaagaccctggattcaatctccagtactacaaacaaacaagcaacctGGGACACAGAGAATGGACTTACTCAAGGATACCTTTGTAAGAAGTTTCAGCCTTGTGTAGAAGCCCAAGGCTCCCAACCTTTGTCTAGTGTCCTTTGTACAGTCCTGATTGCTTGTTTTGAGAGAGCAGTCCCTATGGATGTAAAAT----GAGGACTATCTGTAAGGGTTATT--GCACTGACTGGGGTCCC--ATGCTTTGTCTGAGCCCCATTGGCAGAAGGACACAAACACTGTTCTAAATCTCAACTCACCACCCACCCACCTTAGGCTTCACCACGCACACTGACCTTATTTCCCTTTGACAAGGCACACATGGTCTTCAATAATGTAGGCCCCCACCTAATACAGAAGAGGCCTGTCACCCAAAA-TAACTTGAAAAGCAAACAGAGGGAAGTAGATAAGCattcaaaatcatttatttatagcACAGGACACAAAGCCATCAAAGAGTCTGCAGAAAAGTGACAGCCTCAGCACCCTTTG-GGGCTCAGTTGGGGACCT-GCCCACCCCATGGAGCTGCCTCAAAAATGTGTCTC-AGAGCAGGTATGCCTAGGGTAGAtctacagagaaacagaaaatagat----caAGGTACAAGGGAGAGGA----------GGAACAAACAGCAGTTC--TTCAGGCTTAGATTAGAGAGCTTCATTAAGAGTTTTTGGGGAACACGGAAATCCCCATCATTGGAAGGGCTGTTGTGGAAGCCGAGAATTTTTT-----------------------CATGGACTGGAAGTTTTGGGTGGACCAGAATTTTCTAGGTCAAGTTACTgatgagaataaataaatatttctgcttcaTGTCTCCTTCCTTTCAGGGAAGAGGTGCCTATGGCTTGAGTCCTCCTTCTGCCCAATCTTCCTCATAACT---CCACCCCTCAACCATAGTA-CAGGGTCAGTCCACAGCCTAGATAAGACACTGTGCACTAGACAACCCTTAGGTCCCCTGCCAAATCCAAGAGTCTGAGATTCCAGAATATTCTAGCACTATACCTTTTAGAAA------GGAAAGATCAAACAATTGTATGCATAAACAATTATTTCTGAGGAACAAAAGG----ATAAATCAGAGAACTTCAAACTTGTAGAATGGAATTATTTATGCAGAAATTTCAAGAGTAA--GTGATTTTATAGTTCAAAGAGTGTGTTTTGTTACTCAAAGCCAAAAATAACACACTGATTGATCAAAACTGACAACACCAAACTGAAATGTCACTGAATACTGAACAACATATATGACCAGATCCAGATCAACAAGATTTTATCTAGACCATGAAAGTAAATGGCAGTTTGGTTCCCAGCCACAGATGGTCAGCAAATATTTGCAAGGCCTGAGAAGCCAGCTGGTGAGATAGGACAGCTATGCAATTCCGCACTGCTCACCACCAAT-TCCTTCCCTCACCCAAGATGATTGCTCTCAGTAGCAG-TGAAGT---AAAACCAATAGTGGTCTGT----GGAAATTTTAATCCCTAATTGACCAATTGTGTTGACATCCAATTAAGTCCATGCACATTTGCAGCAT-GAAGACCCTAAATTCTTCAGGGGTGAACACTATACATGTATGCCACAGTCTGCCTGCTGGTATGTTTGTCAAGGACTCTCCATGTGGCTTGTGCTGTGTCAGGAAAATAATCAGAGTATAAAGCAAAGCCTTATTCTCAAACAGCT

a score=30176
s chr3           105386671 1281 + 160039680 AAGGGAGAACAACACAAGACAGTCTATGGGAAAAAGCCTTGATTTTGCAGA--AGAGTCTGCGTTCTCTGTTCTGTTAGAGGACAGGAAGCAAGGGAGGCTGATG-AGTTCCCTGGACTCACACTGAGCCTCACAGCTTTCATTTGCCCACAGAGA----GAAGAAGACTTCTTGGCTGCTGGGTCGAGAGGAGTAAAGAAGGCCTGTGCTGCCTGGGACTATGCATGCTCAGGGAAAATGATAATAATCTCaataacagtatttattgaggtgtcaaaatgtcccaggtatgtgactgtcaaagcactttgcacatgtacatccatttagtcttcaaaataacgtaataaaaagtagttacttttaccctatttttcagatgagaagactgagaaacT--GGTGTTACAGCAAGCTTGACTCTATAGCACT-TCCTTTACCCAGAGGGTAAAATGGA-AGATAGGGGTAAACTTGACTAGAACATCAGGTTTGGTTTCA--CAGGCAAGG----GGATCCAAAGGCACAGGGCAGAGTTCCTTTGGTTCCCCTTGCCTATAGA-CCACCACCCCCCCTTTGCTCAGGCCCTGGGGTCTTCCTTCCAGGACTTTCCTCTTCCTGACTCCACTAAGAAGAAGGAGCGTCCACACTTGCCAT---------AACCAGGAAGATGGTTCTA--------GATACTGGATA-ATTCTCTGACTCTGCAGTTCTGAATTATCCCTTTGAAAA-ACTACCCATTTTTAAAAAGAAGAAACACATTTGCTCAGTTTTACTCCTTGTCTTTGGATAGCACACAGAAGCCACTTAGAGCTTAATATTAACACAGTACATCAATGTCTGCCGGGCTCTAAGTGGCGCGTGTCATGCTGCAGCCGACTGCAAACGGAAGA-----AATGGGTGCAGTCCCTGTGAGCAGTC-ACGTGGAAGAACTCTAACAGGAGTCCTGCTTTCCCCATGAATCCTTGCAGGAGG-------TCAG-----------------------AGAAAACCCATCCATGGCA-GCTGTGTGGCCACCAGCATTAGCTCTGCTGCTTGACAAAAAAAATCTGTTCTGTGTCTCAGTTAATCTCAAATATATGCTAGCGACACCCAAAAC--TCACCTT---------GAACACTATTGGGGGCTTCAAGGATCT---TCAAGTCAACTCATGC--CCCAGGCTGT-GCA---------------TCTATCTGACCACACCACAGGCATTGGTGACTGTCATGCTTTTCTTGGCTTCGCTCTGGTTCCCTTCC------TTCCCCTGTTC-------TTCCTCTTCCTT-----------------------------TCTTTTCTGTGCCTGGATTCTCAAGACCCCTTCTCTTTTCTGTCTAGCTCTTTCATT
s HiC_scaffold_1 115997530 1314 - 233722169 aagacAGGATAATACAAGACACTCTATA--AAAAGATCTGGGTTTTGCTGGTCACACTCTCAACTCTTTGTCCTAGGAGAAGACGACAAGTGTGAGACGCTAATGCAACCAGATGGACTCAGATTGAGCCTCA---------TTTGCTCaaggaaatgagagagaagaCATTTTAGGTGCTGGGTCTAGAGGAGCAAAG---GCCAGGCCTGCCAGGCAC-ACACATGCTCAAAAA------------------------------TTGAGCACTGAAATTGCCTCGGGCATGTGAAAGTCTAAAcactttacttat---------tttatt------aataacCT--TGAGAGGTAGATACTGCTATTctcttttacagatgaaaaaactgagatACTATGGTATCAAAGAAAGCTTGATTCCATAGCAGTAGCCCTAAGTCAGCAGGTAAGATGGATAAATGGAGATGGACCTGGCTGGAGCCTCAAGTTTGGCTTCAAACAGACAAGGAATGGGGGTGCAAGGAGCAGGGGAGGCTGTCCAGGGTCCCC-------AAAGAGTTTCCacagttgttttatt---------------ttcttctaagaccCTTCT---------------AAGAAGAATGAAGACACATTCTTGCCATCTTCACCTCAAATGTGAAAAAGTTGCTCATGGCAATGGCATTGCatacattctttgattttcaggctCTGAAGCATCATTTTAAAAGCACTActgatttttagaaaaagatatgaattttgcttagttttattcctCATTTTTGGATAACAC-CAGAAGCCACTTGGAGCTTAATATTAACACCGTATGTCAATGTCAGCCTGGCTCTAAGTGGCGCATGTCACATTTCAGCTGAATGCAAACTGAAAATGTTGGATGAATGTGCTTCCTCTGAGCAGTAGAAATTGGAAACTTCAATGAGAAGCCCCGCCCTCCCCA-GAATTTCTGTAAGAGGCTGAGTTTCAGGATGGGCTATTTTCAGGAATATCAGAAAACCC-TCCCTGCTACCCTCTGTGGCTACTAACTTTAGCCCTGCAACTTGGC---TAAAGTCTGTTTTGTGTCTCACCCTAT-TCCACCATGTGACAGTGTTCCTCAGGACTGTCATCCTTGAAATACAGAAGAGTATT------TTCAAGGATTTTGATTAGGTCAACTGGGACTTCTCAGGATGTCGCAGTTTAAACTGCCATCTCCTTCTAACCATGCCACAAGTAtttgt---tgttctttgttcttttcctcccctccatttcctttcccttctgttcCCCTGCTCCCTTCCACTCCCCTTCCCTTCATTTGCCTTTCTCTGTTGCGCTCTCTGTCTTTCCCATGCCTGCGTTTTCAATTTTCCTTCTCTTATCTGTctagctctttcctt

a score=39276
s chr3           105392266 1365 + 160039680 CTCGTCAATGTTTTGGTACTTATGTAAGTGGTGCATGCACgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgATACTTATGGAGACTAATCTTTCATTCAGGA---AACTATAAACATATCAGGATGACTGAGGGGC-TCCAAGAACACACAAGTTAACCATGTAAGCCCACCAGTCTAGCCTGGTGTTCCTCA------GACCCCAGAGTCCAAACCAGGATAGCCTCTGCTTTCATTCTGTTTGAGTCTATGCACAGTCCTTTGCCTGAAGTCTCCGCCCTGTAACATCATCTGAAGCACTACTCTGAAGGTTCTAAGGTGATCTGGGACCTGGCAAGTAACTGGGAAGACTCTCCAGGGCATTTGTGAATGCagagagagagagagagagagagagagagagagagagaTCAGGCATGCCACAGAAGGAGACAGGGACAAGATGGCCGAGAGCTGCTGTGCTGGGCTTTGCCCTTTCCTTATCAGCTTTGACAAAG--AGAAGAAAAGAGGATTTTCTCCGCCCTCCTTTTTTTCCAATAAGCTCTGGAAGCACCAGGACTTTGAGCATAATCCTTATTGACTCCATCTGCCagagagggggagagagagagagagagagagagagagagagagagagagaCGAGGAGTCTTGGACTGTTGCTCTTCAGTCCTCTTAGAGCTGCTGGCTTCTCCCTTCCAGCTGATCTTCCCCAAACCACAGCCTCCACATACTACCAGGCCTCTAAGTTACAGGAAGGACTGGAGTCATCCTGCAGGGCCAGGCTCGA-GGGCAGTGCGTTGGAAGGATGCCCAGGCCTTTTTGTCTTCCTTCCATCTTGGCGAGAGGCCAGAGATGAGGCTAGTGAAGATGAG-GACTTGAAAGAAAGCCTTAGAACTGAGTGGTTCAAACAATTGCT-GAAAAAGGAAAGCTCGGCTTTCATTA-----TTCCTCCAAATTAGGGGCTTTCTTTGTA-TTTTATATCTATTCTTAGAGCTAGAA-ACCGAAAATAATTTTGGACAAAATGCAGAAGTGAGCATAAGCTCTTCTGAAACCAGGAGAACCAACACCACCAGATGCAGAG--CCACACTGCCCCAAGGTCAGGCTTTGCTGAC--AGGCCCTACT------CTGATGACACAG---------------------CAACTCCACATAGTGTTCTTTATccccagagccccctgtggactcaagcaaggttgttatcaatgttgtatggaagataaacttttctctctcaccctctcctacaacctactacgctacctccctctacctgtgtggattcttagcaattttcttca-----gcacgccccacct------cttgacaccatctcagactttgctttcctgggagcttttccagtcacctggaa
s HiC_scaffold_1 116001325 1326 - 233722169 cTTATCAatgcttttgtatttctataagcagtg--------------tgtgtgtgtgtgtgtgtgtgtgtgcctgtgtgtgta-atGCAATACCTACAGAGACCAGACTT--ATTCAGGGGCTATCTGTGGAAAAGTTAGGATGATTAAAGGAAATCTAAGGGCATGCATGTTTACCACAGGAGTCTAGCAATCTAGCCTAGTGCCTATCACTGTCCTGCCCCAGTTTC-----------AGCCCCCTCTTTTATCCTGTCTAAGTCACTGAGAAGTC-TATGCCT-ATGACCTCACCTT---ACATCATCTGACACACTCCTGTGAAGGCTCTA-GGTGAAATGGGGTCTAGAGAGTGACCAGGAAGA-TATTCAGAGAATTCCGTGATGCAGATTGAGAGAGG------------------------CTAGGTGTGCCAcagatgaaaaaagaga-aagatggcTGAGTGCTGCTGTACTAGGCTTTGCTGATTTCTCATCAGCTTTGAagggggaagaagaaaagaggattttctcctccctcctttt---ccAATAAGCACTGTAGCCACTCAGAGTTTGAGTATAATCCTTATTGACTCCATCtgccagggagggaggga-agagag-----------gaaggggaaaaagagaattgTGGAG---CAGAGCTTCGCTTGCCAGTCCTCTCA----------CTTCTCCCTTCCTGCAGATCCCCACAAGACCAAAGATGCCAGGT--TTCTGGGACTTTGAGCTAAGAAAGGAGCTGGAGTAGGACTCCAGGACCAGGCCTGAGGGGCAGCG-GTTGGAGTGGAGCCCAGGTC---ctgttttctctctgctttggctggaggccagagatgaAGCAAGTAGAGATGGGAGGCTTGAAAGAAAGCCCTAAAGCCAAGAACCTCAAACAATTGTTGGAAAAAGGATGTCACACTTCTAATTAACTCCCCCCTTCAAATTAGGGGGTTTCTTTGTGCTTTTGTCCCTATTCTtagcttcagaattttttttttaaattgggacAAAATGCAGAAGTGAGTAAAAGCAC-TATACAATCTGGGGGACCTCTACAATTAGATGCAGAAATCTGCCTTG-CCCAAGGTTGTATTCAGATGACTGTGGTCCCATCAGATGACTGATGGAGCAGGGGCACAAAGCCCAGCCATTTCAGTTAAACATAAGTTGTTTTATCTCCAGAGTTTCGTATAGAGTTGCCCAAGATTATCACTGATAATGCATGGACAATTGACTTCTCTCCCT-ACTTATTTCTGTCCCCTTCCCCTCCA-----TTCCACTGGTGTTGCTTCCAAG-AATTTTCTTCAGTTCTGCATGTTAAATTCTGCAAGTTAAATTCCATCTCAAAGTTTGCTTTCTAGAGAGTTTAACTGGCCACATAAAA

a score=60102
s chr3           105398542 4267 + 160039680 [encoded data, 4777 characters]
s HiC_scaffold_1 116006709 4234 - 233722169 [encoded data, 4777 characters]

a score=139292
s chr3           105403385 5555 + 160039680 [encoded data, 6201 characters]
s HiC_scaffold_1 116011101 5623 - 233722169 [encoded data, 6201 characters]

a score=77475
s chr3           105409259 3911 + 160039680 [encoded data, 4309 characters]
s HiC_scaffold_1 116016700 3941 - 233722169 [encoded data, 4309 characters]

a score=14132
s chr3           105417677 456 + 160039680 GGGACAACAGTGCCAAGATGACCACATTTCTTGTCTTTGAGGTCTTCTTGCACACTATTACACTCAAATAAGAAGCCAATTGTTCTGAGGGTCTTAAAGAACATGAAGGGGTATGGAGGCC----------GCAGGGGGCTGACCTTCCAGGTGGAGGCGAGAGCCACTGTGTGTATGAGGAC---ATGAGAGCATTTGTTTCCATGGATCTGAAAGGCTCAGGGGGACTAGAATTGCATATGTATTTTAAAAATCAAGttctaggaaaagcctctgtgctctttaatctctaggcagcacagggaggtttggttGTATCTTGTCAACCCTCGCTGCCCTCCGTGCTTCTGTTTTTCTGTAGTATAAGTGTTACATTTGGGGACATCACTTTCATTCAAGCCACCTGAAGTACTGTCTTATTCTGTTTATTTTCCT--TCCTAGAACAGCTCAAACTAGTGGAGTGGAATA
s HiC_scaffold_1 116023227 445 - 233722169 GGGACAACAGCACCcacatgattacatttattgcatGTGAAAGTGCTCTCCATCTTACTATACT--AAGAAAAAGCCAATGGTTTTGAGGGTCTCCAGCCATACTGAGGAATATGGAGTCCATGATGGGAGGCAGGGAGC---------AGGTGGAGGAGAGAGCTATGACTTGAATGACAGCCCCATGGGACCACGTGGG--CACTTATTTGAGAGGCAT-GAGGGATTCCAATAACAGATGCACTTTGATG-CAATGTCCTAGCATAAGCTCAGATGTTCTTTTATCTCTGACCATCACAGAAATAATCAGTTGTATCTTGTCAACCCTC----CCCTTTGTgcctttgttttcctgttgtatGAATGTTATATTTGGGATC-TCATTTTCATTCAAGCCACTAATAGTCCTCTCTTATTCTGTTTATTCACCTCATCCCAGG------CCAACCAACAGAGAAGAATA

a score=62990
s chr3           105424480 1941 + 160039680 CTGCAAAAAAAGGTGTCAAAAGAAGCCACCATCAAGGTGACCTT-AATGTCTCAAGCTTTGAATTTTACAAGCT-TTTCCCCTT-----------TCCTCTCACCTCCATACCAGAAACCTCTACACCC-CACACATG-ATGCATGTGCACCTATGTGTGCCC----TACCATAGTCACATACACTCAATGC--------------TTTGTGC--------CCGGAGAAGAACTGGGACAGTGCAGAGCTCCTTT--CTGCCATGCTGTGGG--------CTTAGACAGAGCCAGGGAAGCTATCTATCTCCCAGGAGATCAGCACCCTGCAATGTTGTTTTCATATCCTTTTCCTATTGTTGATTCTACTGATCACTGATAACACAGCTAT-GCTCAGGGGTGAATTACAGAGAAGAGACTTCCTATATAAATTCATAACAATGTGAGCTAGAAACCTAGCACGTGGTTTTGAATACCAA--aaaataaaataaataaaataaaaataaaatCTCACATGAAAGGAATTAGTCCTCTTCTCCATCCTCCTGCT-CTGAAGGTCCCCACGTCTGTCCCCAGGTGATCAGGATGCTTTCTATTCTGACCCTGGGCTCTCGGGCAGGGTC-ACGCAGGAGGTCCCTAAC-AGCCATGGCTGTGTGCAGGAAAATTAATTAATTTATTGGCTGTAATTGTAAGCACTTTTACCTTCGGTCAGGCTTTTTTTTTTTTCCTTCCAATATGGTTTTCTTACCAGAGGGTTAAGGTCAGCCCTT--TGCCTTGCCC-CTAATAAAAACAGCCATTTGGGCATCCTGTGACCTCTTAGTCAGGTTGCCCAAGGTGAAGCAGCATACAG----CTGTTCATCT--------TTGTCCTA----AAGTTTCAGCAGCAAATAAAGTGGGTTAGTTAAAGAGCTACC-----------------------GATTTGCTGACACGGGGAAGGTTACCCAATGTCATTGTCATCATTGGAACCATTC--TGGAGAAAGCTGATGGGTGGGGCAGCAAAGTGAGCCCACCCACTCTACAGGGAAGCCATTAATACCTGGGCCTCAAATAGAACCCAG--------AGCAGAGGCACTGAATGCCAATAATCTACTGTTATATTTAAATCAAACGGAACAAAACCTAGCAGCTTGGGAGCCTTGATGGCTATGTGGTCTCCTCCTTCCAGTGTTTCATAAGAGCCCCCATTTTGTGTAACCACAGAATGCCTATAAAACAGGGGGTT-GGGAAGGGGAGAGCAGCTGACAGAGGTGTCAATAAGCCAATTTGTGGCTTGTTAGAATGTTACACTTGTTTATCGGCATTTAACGAGACAAGACATTGATGTTAACACAGTGGGAGGGAAGTGGCCTGGACCAATGGTATCCCTCGCTGAAAATTAATTTAAACCCTCTTCTCTCTGTGCCAGAAATGGTAGAGCTAATTCATTACCAAAGTGTTGAAATGCCACTGAAAATGAGCTCGGGTAATAGGGGTAAGTCATCAGCAACTGAACGAAGTCCCAATTTAGCTTTCTTTTGGTAGCCTCCAGTAAATGAGACACTGTGCGATGATATGCTTTAAGGCAGAGAAGAGAACAGAGAAGGTTTATTTAA-TTGGGGGAT-GGGAGGACTGTAGGGTGGGAAATGGAGTGAGGGTCATATGTAGATC---TTTGGAAATTCTGAAAACTGTTGCTCCCACCCATAGTCCAGTTCACAGCCACTCCCACTGATGGAAATTCAACAGCTTCTGTTTACAACCTGTTAGCCTGAAGTGTCCAGGGGCCTGGCAAGGCCATGCTCTTTTATCCCAATTCTGTGAAATCTCTGTCCCGATCGTTTATAAGATCTCAGTTCCATGTGCTGGCCTCGAGTTGAGTGGAGGTTGGCAGGCCATTACTCATCTCTCTGCTCCATGCTTCCTATTTAGCTGTGATTCAGGTCACGTGGTCCTCAAGTTGTCGCGTCTCCTATTTTATTTGCTCCTTGTTGTGTGTTCCTCTGGCTGCCTTATTTTCCCAGAGA
s HiC_scaffold_1 116028632 1943 - 233722169 CTACGGAGAAAG----CAAAGGGAGCC-CCATCAAAGCTATCTTGAAGGGACCAAACTTTGTACTTTACCAGATGTTTCTCCCTCCATGCTAGCCTCCTCTACCTttaatgacacacacacacacacacacacacacacacacacacacacccgcactTGCACGCAGTTGCATGTTCACATACATTCAgtgtaattttctgtttcttttgagctTAGCATCCCCAGGAAGATCTGGAAGAAGGTGGAGCACCTTCTCCAGTCATGTTGCATGAGGGCAGCCTTAGACAGGGC---AGAAACG--CTATCTCCCCAGAAAGCAACATCCTGCAATGTTGTTTCCATACCCCTTTCTGGTAGTTGATTCTACTGATCACTGATAACATTGCTATTGACCATGGTGGAATTATAAAGGACAGATTTCCTAAATAAATTCATAACAATATGAACTTGAAAAATAGTGGGTGATTTTGAAAACCAACCAAATTA-------TGAAACA----------CTCACATCAAAAGAACGAGTCATCTCACCTATCACTCTGCTTCTGAGAACCACAGAGCCTGTCCC-AGGAGATCAGGTTGCTGTCTGCTCTGTTTCTGGGATCTCAAGAAGGGGCTGAGCAGGAGAACCCTTGTTGGCTCTGACCATGTGA--------TATACCAGTCATTAGCCACATCGGTAAGTATCTTCATTCTCAATCAA---CTTTTCCTGATCATTCAAGGAGGATTCTCTTACT-GTGGGTTAAGGTCATTCATTCTTGCTTTATCTTCTAATAAAAAGAGCCTTTAAGTCATGTTGTAACCTGGCAGGCATGCTGTCTATAGTGGGGTATCATACTGTGTCCTGTTTTCCTGGGACCTGCTGTCCTGTGTCAGGTCCTTCCACCATACAATGTAAGCAGGTTAAATGGTTACCAGCACTTTTGTCCTTCATGATCTGATTTTCCAACATGGA-----CTACCCAGTGTAACAGCCAA---TGGAGTTGTTCCTTGAAAAAAGTCAAGAGGatggaaaggaa-------------------cagaaaatccATGAACACA-GGACACTAAATGAACTCCAAGGATGGAAAGTGAAGAGACCAAATTCAGACA-TCTGATATTAAATGTAAATCAGGCAGAGCAAAAATGAGCAGCCAGGGAACTCAGATGCTAACACCAGCATCTCATTTTCCTGTTCCTTTAGAGCCCCCACTTTGTATAACTACATA-TACCTATAAAGCAGGAGATTTGGGAAGCAGAGAACAGCTGACAGAGGTGTCAATAAGCCAATTTGTGGCTTGTTAGAGTGTTACACTTGTTTATCAGCATTTAACGAGACAAGACATCGATGTTAACACAGTAGGAGGGAAGTTGCCTGGACCAATAGTATTCTTTgctgaaaattaatttaaacctTCTTTTCTTTGTGCCAGAAATGGTGGATCTAATTCATTACTAAAGTGTTGAAATGCCACTGAAAATGAGTTAGAGTAATAGCGGCGAGTCATCAGCAGCTGAACAAAATCCCAATTTAGCTTTCGTTTGGTAACCTCTCTTAAATGAGACATTGTGAAATAATATGCTTTATGGCAGGGAGCAAAACAACAAGGACTTTTTAAATTTAGGTGATGGGGAGGGCATCAGaactagaaa--gaaaaagttttatgCACAGATTATGTTAGAAAGCTGAGAGGGCTGCTATCACTGC-----AGCAAGTTCAC-----TCTGCATGAATGGGAACTCAGTGACTTGTGTTTGGGACCTGCCTGCTTGAAGATTCCAAGGTCCT-GCAAGATCAAGCTCTTTTACCAAAATTCTGTGAAATCTCTATTCAGATCATTTACCAGATCTCAGCTTCATGTGCGGGTTTCCAGTTGAG----GCTGGGCACAGCATTTCTCATCTCTTTG-TATAAGTCTCCT-------------------------GTGCCCAGTAATTTGAGGCTCCCATTTTTTTCActctttgctctttattctttTGGTTGCTTTATTCTCccaggaa

a score=3415
s chr3           105427213 48 + 160039680 CAGTTCTGAGTCTAGGCTTTAAGAGGCACTGCATGTTCCTGCTCTGCT
s HiC_scaffold_1 182743077 48 - 233722169 CAGTTCTGGGCCTAGGCTTCAAGAGGCCCTGTATGCTTCTGCTCTTCT

a score=50556
s chr3           105428019 1935 + 160039680 aaacacaaagctatctctccaggcccTAGGGATTCGTTCTGAATGATCATTTAAAAACATTTGTTGGGTTTCCCCCCACCCCCACCCCCTCATGGTAGGGAGACAGGCTTCCAAATTAAAAGTTACAAGAACCAAGGGGAGGAG-CATGGGAGGATCTTTGTGGCAGGGTAGTCAGCAATCCAGATATCCTCCCCTTTCACACCTTGCAGCCACCAAACAGGGCT-TCATCTCAAGC-ATCATTCCC-CTGACTTGGAAGGGTGATAGATAGTCTTTGGCAAAGCTTTCATAATGTGAGCCCAGGTCCAAGCTGTTTGGATGTGAATTGTTAGGGGATAAATGCCTCGATTATTCGTTTTACTGCTCATGAGAGGCAGCCATACCTATGTTTCCAATAAGCATGGTTGGCATAACAGCACACAGTCCCCTCCTTCCTGCTGTGTGTGTAAGTGGCCTCTCCCTGGCCAGGCTCCCTGCTGCAAATGTGTGATTACAGGATTAGAAAGGTGATGGAAATAGTAATCATGCCTGTTTTCAGACAGAGTTTTCCCTCAAGGGACCTCAAATGGCTGTGTGCTTATTCATACCTACAAGGGGAAAAAAACCCTAGGGGGTACTTTCATAG-TGGGCAAATAGAGCTGCTATTGGCAACACAGGCCTAT----------------AGGCTGGT----GGGTAGAGGCTGTCAGAGCAGAATTTAGGGCCCT-------CCAGGTTATGCAAT---------TGGGCCTGGAATTAGGGCACTACCTATTGTCAT-ATGGGTAGAGCTTTAGTGGCAAAGTCATCTGCAGTTGG-------CAGCCCAGCCAGCCAACAGTTTGGCAAACATGCAACAGGAGCTAGATAGCCATCTTGACTTGTGGTAGACATCAAGGAAGTCCAACAGAAGCTGTCTGGTTCTTGTTTTGTTTTTTAGGAAAAAACAAAA-----ACAAAACCAAAAAAAGCATGATGGTTCAGAAAGGAGGGT------------TTCAAGCAGGGTAGAAGTCCTCAGAAAGGAAGGGCTCAGAAGAACAAGGTAGGG--TCAGGCTCGGATGAGCCAG-GAGGTCAGGTGGATGGTCTAAGGAGTCAGGCATGCTCACTGAACCAGGAAAATGTCCTACCACAGCTCTGTCAATGGCCAGAACAGGCCCTGCAGTCAGATCGATTGGCTCTGAGTCACCAAAACCACCATTAGATTCATTCTGTGGAAATAAAGGCCTGGTTCCAGCACCAAGAGAGAATTCTATTACTCTGCTGGAG----AATGGTGAAGGCGGGGTTCTGGGGGGAGGCATGACAGCACAAATGCCATCTAA-GCGCAGGCTCCTGGGGGTCATAGGGACTTCAGATTAGTCCCAGCTAGAATGCTGCCTTCTACGTGGAAC--------ATCACATATCAGGGCTGTAGTCCTAGAGCTAGTCCAGGGTGCACCC-TGCTTC---ATGGATTTTAAGCT-AGAAGCCTATGATGGATCTGCCTCA--------AACCCTGGAAGAGACTAGAAGCCTCCTAACTTTCTTCTTCCCTTCATTACTAT----------GAGGAATACATGAAATAACACACTAAGTCACTTTGGAAAACTAGAACTAT---AAAGCTTTGTCACTATTATTTGTGACACAGCAG----CATGTCTCTCTAAATGGAATTTCCCCAGGCTGACTTGCTAGCTTAGGGATCATTTAG--CTCCTGCTCTCTTTTCTTAAGGCTCCATCCTCACGAT---CCCTTGTACTTTAGTCTTC------------CAGTAAAGACTTCTGTGATATCAG----AGACAGAGCCAT-GCTTACAAAAATTGGCCAGGGGCTA-Tgatcatctggccaaccttctt--attttagttgtgggcaccaatgtacctac------tgttacccacctatggccacactgctagtcagttgcagagccagaaA--ACAGTGTCTGGTGCCCAGTGGGAACTT-GTATACCATG---CTTACCACCATCACT-CAGCTATGATGTGCTTCCACTGAGCAATTCATTTT
s HiC_scaffold_1 116033768 1996 - 233722169 aaacaaaaacccctgtATCTA----TTAAAGACTCATTCTAAAT--------AAAAACTTTGGAGAGTCCTTGTCCCACTCC----------TGATAGGAAGATAGGGCTCTGGATCAATACTTCCATAATCCAATTATAGGAGATATGAGAGACTCTTTGTTTTTGGGTAGTTGATTGCCCATAGATCCTGCCCTTCCATACCTTCCAACCCACTGAGAGAGCCAGGAGTTCAGGCCAGCATTCCCACTCGCCCTGAGGGTTTACAT---GTCTTTGGCAAAATCTTTAAAATCTGAGCACAGGTCCCAACAGTTTCAATGTGAGCTATTTGGAAATAAATTCTTCAATTCTTCATTTTTCTACTCATGAAAGGTAGCAATTCCTACATTTTCACTAAGCATGGTTGGCATA-CAGTACAGAGCCTCCATTTTCCTGCTGTTTATATAAATGGACTCACCCAGGCCAGGCTCCCTGCTGCAAATGTGTGATTAAAGGATTATAAAGGTGATGGAAATAGTAatcacatttgttttcaaacagtgCCTTCCTTCAAGGGATCCAAAGTGGCTGTGTTCTTATGCATACCTTCATGGAAAAGAAACCC---AGGGGTACTTTCATAGATGGGCCAGTAGGACTCCTG-AAGTTGCTTAAGCTTATCCAGCTCCTTGGTTTCAGATTTGTAGTGAGGGAAGGGATGGCA-AATAGAATTTAAAACCTGCATATGACCAGATCACCAAATCACCCTGACCAGATCTGGAATGAGGAC---ATCTTTCTTCATGGTGGGTAAGCAGCTTAGGGCAAACTTAAAAGCAATGGAATATTTTCAGCCTATTAGGCAAATAATTTTGCAAACATGTCATGGAAACTAGACAGACATTCTGACTAGTGGTCAGTATCAGTGAGGTCAGTGAGCAG-TGTCAAG--------TTGTTTCACAGAGCACAGCAAAGTGTGTCTAGAAATAGGCAAAGCATAGACGCTCAGGGTGTATGTTCTGGAACCTGTCTTTAAGCAGGGCTTGAATTTCCAGAAAAGAAGGAGTCTGAAGAGTATGACAGGTACCCTGATTCAG-TGAGTAATCAAGCTGAGGTACGTAATCAAGGAAGACCAGCTTGTTCATGGGAGCCATGCAAAGTCTAACCATAGCTGAGTCAAAGGC------------------CAGATCAATTAGAGCTGAGTCACCAAAACCACT-TACTGCTCATTCTGTGTAAATAAAAACCTGCCTCCAATACCCAGGGAGAGGGTTATTGTACTACAGGAAAGATAGTGATAAAGGTGGAG---------------CAGTATCATCAAGGCCATCTAAGGTGCGAGGGTTAGGAGGTCATAGGGACTTTGGATTGCTCTCACCAAAAATTTTGCCTTTCATGTGGAATTGCTGTCAGTCATGTGTCAGGGCATAAATCCTGGCTCTA-TCCAGATTGTACCCTTGCTTCACTATGGGACTTAGGCTGAGTAACCTACCTTGgatctgcctcagtttccctacttCCAGGAGAGATTAGTACCtccctaattttttcttttacattattgTTGTATAACTTGTAAAATAACTCATGAAAT---GCATGAAGTCACTT-----AAATAGAA-TATGTGAAAGTGTCATCTGTATTACTGTTTCTACAGCATACACAATacttctcaaaatgaaatttcctGAGGCTGACCTACCAACTTGAGAATTATCTAGTCTTCCTGTTCCTTTTCCCTCTTGTTCTA-CTCCAGGATACACCCTTGTCCATCACTCCACCACCATCACCAGCAGCAGAGGCTTCTGCAACCTCAGGAAAAGAGAAAGCCACAGTGTATGAGAATTGGTGGGGAGCTAGGGGTTATCTGATcacccttttttaattttattagtaggAACTAGTGCAAATACAGGAAATGTTACCTGACAAAAGTCATATTGCTAGCCAATGTCTGAGCCAGAAagcacagtgcttggcacacAGTGGGAACTCGGTATTCTGTAGCCTTTATTAAtgttattccagctattccatggTTTCACAGAGCAGTACATTTT

a score=47023
s chr3           105432412 2138 + 160039680 TTTATTCATTTATTCAGCCATTCAAGATTATTGAATGTTTATTCATGTCAGAAACTTTATCAA-GTTTCTGGACATACAAGCAAATGAGATTATCCCTGACTTTAATAGTAAATAGTAAACACAGTAATATATTTAATAACAGATATAGCAATAGCAATGGCTGACAGtggg---tgtttatttatgtggtaggaaga-ttttctaagctatttgtgtgcactttaattaaattattttaataaatatgtgatga--atgtcccctctgtttgctaagtgaggaaac---aggcacagacatggtaagtactttac-caaggtcttataacaagcgggaatttaagctgaaatttaaactttaagtccaatggacattttttctaGGAAGAAGTAGCAGCCAGAGGTTGTGATACTGGGTGCTCTGTGATAGGGTGCTACTGTGATGCTGGGTGCCAGCTCTCCATGATAGTGAAAAAAGATAAATGGT-----ATGGTGGCCCA------TCTAAGGCCAATTCTTG----GCTACATTGGGAAGAGCACATATCTGCATAAGGATTTAAAGAGACAA-----------TCCACCAAAGAGGGAATTTCCGGGGAATCAACAAGGGTGTTGGAGGTATCCAGGAAACAGAAGAAGCCAGCCATGGGCAAGGTCCTTGGGATTAGT-------------GCTATGAAGAAAGCAAGTTTTACTGAA-AAGTAATGTGATGGACCTTGGGTATCCTAGAGACCTGAGGAATCTAGAGAACTAAATCTGTCATC--------TATAGCAGTGGAACAAACTCATGAGGAGGGACAGAATCACCCAAAGGATCCAGCCACATGATGTGCCAGCC-----------GAGGAAAG-----CCTGCAAATACAGGACCACTCTTCAGAGTCAAGCACAGCCAGGCTGGGTAGGACTAAGCTCAGGACACATGACATTCAGCTTGGCTGAGTGTCCCCAAATCCATCTGAAGTAGCTTGGAGCTTGGAGGTGGGTTCACTTGTAGGCAAGAGACAGCCCAGCAtctctctct---ctctctctctctctctctctctctctctctctctctctctctctctcttattctttctctctctctTCAAAT-TCACCAGGAGGGGAGAGAGTTCCTTTCTATTCTGTTTCTTGGGACATGGAGTTGAGTCTTGAGTAATAACTTAATCCATTTTCCAAATTCTCTGCCAGCTCTCCCTGGTTGTAGTAGAAGTTGCGTGCTTACAAGGGAAGGTCTGACTCCATTCCTCTGGGCCTCAACTTCTAGGAATTAGAATGTGGAAAC--TAGCAGCTGGGAGAATCTGGGGAGTGGG---------GCTTAACCAGTCATGATGCCACATTCAGAA-AAGCCTCATGGTCCTCATTTGAGGGTTAAGAAGGGAGGAGGATGAGATAGGCTTTAGTCTGTTCTAGAAGAAAATGAAGCCTGGTTTTTTTCCCTTCCTGATTAGCATTTTTATTGCATCCTTCCTATTTGCTCTGCCTGCTCATAATTAAATACTGCCCATGGTGTCTCGTCTATTTTGGTAATGTGCTCTCGGACACCGATGGATTGGATTTATATTTGCTTTATGGGTTTCCTCCACTGCTAGAGAATGAGGCTTAA-----------------GCAAGGTAGGTCGGATATGGGAGGGAGACCAGCATTGAGGTCAGGAGCCTCCTCACCCCAGTGCTAGGATCTGAGATGATATCTTGGATGAAAAATGGAAGAAGTATGTGTCCTCCCTGTATCCTG-AGCAATTTCTATTCATGATGGTCTGAGACATAAGGCAGCTGTCTCTGTGTTGCTCAGGAAAA-ATGAGGTCCAGAGGCTGACAGCAATCCTCAAAGGTTAGAAGACATCAATGGGCCAAAGCAATGAA------------ATTCTCTTGGATGTAGACTCCAGAAATTTGCCCAGAATGCTAAGCAAAG-CCTGAGGCTTGTTCCAGTTGTGGTGCTATT---------------TGTCCTCTTCACAAGACCCA-CAGTCACAGCT-ACCGTCAAGG---------------------CCACCCATCTTGTGCCATCATGTTCTTTTCATTGCAGTGGCAGCCCTCCAG--CATCTTCTCCTGTC---TGTGGTAGCATCCATCCTATCTCCAGGGAGCGGTCTCTCATGCCTCAT--CTTTCTTTTCTTCTA-TCTCTATTCTAAAGCTCAGCTTCCTCCGATCAGCAGGTCAGACTTGAATCACATTAGGAAAGGTT
s HiC_scaffold_1 116038055 2132 - 233722169 tttaaaaattcagtaatacatTCAATGATATTA----TTTATTAATGCCAGACATTGTATCAAAGTATTTGGACATACAGGCAAGTAAGACAATCA------TCAATAATAAATATCA----------------------------TAGCAATGAAAATAA-TGACAGTGAACACTGTTTATTAA-ATGATAAGCATAGTTTTCAAAGTTCTCTGCATGCATTTTCATTAAGTTCTTATAAAAACTCTAAGAAGACAATGTCATCTCTGTTTGTTGGACAAGAAAACTGAGGGAACACTAGagttaagtaacttgctcaagTTTCCACAGCAGGTCAGTAGCTGAGGTGATACATAACTTTTCA-TCCAAAAGACACTTCC----AGAAGAGGCAGTATCCAAA-------ATACAGAT----------------------------CTGAATGCTGTCTTTTTGTGGCATAGAAATAGGAGAGATGGTCCAGGATGAGATACCAGTTGATCCTCAGGCTAATTCCTACTCTGTGACATTGCAAAGAGT-CTTGGCTGCACAGGAATttgaggagaaaagcagagacaaaTCAAATGAAGACTGCACTGCATGGGCTCCAGCCAGGGTGATGACTGTGCCCAACGAACACAAGTGGACAGCTGAGGG-AAAGCACCTGGGGTGAGTCAGGGTCCTCGAGACCATAAAGAAAGTGAGTTGTACTTAACAAATTGCCTCTTGGAGCTT----ATCCCAGAG-CCTAAgggaaat-gagaaataaatttgccTTTGATGGTAGTATGGAAGTTGAACAAGTTTCCAAGGA------------CCCAGATGATCTA-CTATATGAGTTGTCAGCCAAATTGGGACTGAGGAAAGGATGGCCTGAAAATCCTGAACCAC--------------CTCAGCCAAACTAGATGGGGTTGCGC-----ACACACAATTTAGGGCCTGGCTAAGTGCC------TTCATTCTATGTAGATCGCAATT---GGATGGATTCAC----AGACCAGAAAC---TCAGCTCTGCACGCTGGATTCAGGTTGGCCAAGTGGCACTTTGTTAGCCTCCTTTTCTCTTTGTGGAAATC-----------CTAGAAATGTTATTAAAAGGAGAGACAgttccttcctaaattgttccttgAGACATGGTATTAAGCCT-GGGTAACAACTTCCTTCCCTTTCCAAGTCATCTGCCAGTTGTCTGTGGCTGAGGTGGAAGCTGTGTTCTGAGAAGAGAAGACTT--CCCCTGCCATCCCAGACTGGTCTTCTAGGAACTGGGCTTCCGAAATAACAGAAGCAAGGAGAAGCTGGGAAGTGGGAGTAAATTGGACTACCCTGTCACTGTGTCATATTCAGAATGAGGCCTGTGGCACTCATTTGAGGGTTTAGAAGAGAGTAAAA-GAGATGAGCTTTAGTCTGttctacaagaaaatgaagccTG-TTTTTATTCCTTCCTAATTAGCATTTTTATTGTGTCCCTCCTATTTGCTCTGCCTGCTCATAATTAAATACTGCCCATGGTGTCTCGTCTATCTTGGTAATGTTCTCTCAGGCACCGATCAATTGGATTTC------CTTTACAGACTCACcccaatggtagaaaaaaagactcaaattcagtCCCTCCTCTGGCAGGGAAAGTCAGCCTCAGGAGAGTGCCTAGTATTGAGGTCAGGAGCCTCCTCAGAGCA----TGGTGTCTGATGTGAGATCTTGAACTGAAAATTTATTAAGTGCAAGATCTTTTTGTCCTCAGAAGCAACCCCTATGAAACATGGCCCAGGATATAAGACAGCAGCCTCCACTCTGCTGGAGAAAGCCTAAGGCCCAGA-GCTAGCAGTGATACCAGAAGGTTAGAAGAGAG-AATGGGGGAGAGATGTAAAGAGACAGACAGGATTCTCCAGGAGGAAGCTTCTAGACTTTCAGCTAGAAATCTACATGGAGACCTGACATTGGTTGCACCTGCCATGCTATCTTCATGATTCACTGGTATCCACTTCATGTGGCCCATCAGTCACGGGTCACAGTCAAGGACACAGATGCAGCCCCACAAACCACTCCTCCTGTGTCAC----TGCATTTCCTTGCA-----AGCCCTTCAAGTTGCCCTTTGCTGTCCCACGAAGTGGCATCCATTCTATTTCGGAGGCACTGTCTTATATTCTCCATTGTCTTCTCTACCTCCACTCTCTA-ACTAAAGCCTA-CTGTGTCCTCTCATCATATTCAAGTTGGACCACAGTAAGGAATGTT

a score=73475
s chr3           105435542 4096 + 160039680 [encoded data, 4401 characters]
s HiC_scaffold_1 116041442 3798 - 233722169 [encoded data, 4401 characters]

a score=28038
s chr3           105441116 1123 + 160039680 TGGTACCTGCCTTTCACCTGGTAGCCT------AGGGGGACATGGGAAGTAAAGGGGAGctccctccctccctccctccctccctccctccctccctccctccctcATCACCATCCCACTGGGGCTGCTGTTCACTAATGAGGCTGTGGTTTGTTTCTTTCTTTGTCCACTTCAGACATCCGGAGCAAAT-GGGAACCTGTGAGCAGTGAGCATGAGTTTGCAAAATGGTCTTGAGCATCGGTTAAGGAGTATGGAGCACACCACTTTGGTGGATGGCAGCCTGAGTAGAAGTGAGGAGGCTCCATGGATCCAGCAGACAGGGTCTTCACCCTAGTAACA-CAGGGCAGTAATGTGCTAGCTACATAAAGCCTGTGGCTGCCTGTAGC------TGTTTTTCTCAGGCCAGGGCAGGC-GTCTCCTTTCTTTATGACTCTGAGTTTGATTTAACACACACACTTAAAAAATGAAAGAACAACTTCTTAAATTTGCAGTAAATGTATTGTTCAATAGATTTGATTTATTAGTTAGGAGTCATAGAAGAGCCTTGGTGGCAATTTATTGTGG---TGTCTCAGGAACTGGAGTCACTGCCTGGATCTGCTTAGGTTCCTATGGGGGGAAAAAATCC----AAGAGAAGACCCTTAGCTCAT--TGGCACCAGTGGGGATTATAACTGCCTTACATCTTACTCTGTATGTCAGGTTAACAAAGGAAGGAAGTGGTTTAACCTGATGAAA-----TGGGCCTTGTTTCCATGTGGTTGGT--TGGTTGGAGCCAAGAAACAGAGGGGTTTTCAGGCATCCCTACTTTATTAGACA-------GGCTCTACTTGTT--------------------GACATTAAATAGATGGAAAATGTGGGGGGGTGGCACAT---------------------------------------------------AATGAGAAGATGAACCAAGGCTTATAAATT--TAGGATTCAAGAGGATCAAATCTTCAACAAATGGTCTGCTTTTGGATCCTGCCCTGAGGCCAT-TGCTCTTGTCTCTGGACAGCTGGAAAGTATGGAGAGGTCCTTTGCAGGGGATGGGAAGT------------CTTCGA----AAGACCTCCATGTAAGTGTAAGAGAAGCAGAGGTGAGCAGGAAGGACAATATCACTATAGAGGGAAGAATCTGCACAAACCCTCAACAGCTGGAGTAAGAAAAAACATAATGGT
s HiC_scaffold_1 116045828 1203 - 233722169 TGGGACTTGAATTCCACTTAGAAGCATTTGAAGAGGGTGAAATGGaaagtaaaaggaagaacagCCCATAACTTGCTCCCCCTC-------------CTGTCCCTCATCACCATCCCACCAACGCTGTTATTCACTAAGAAGGCTgttgt--gtttccttttttgtccACTTCAGGCATCTGGAGTGAAGAGGGAGCCTGTTAAGATTGAACCTGTATTTGCAAAATTGAGTCAGGCATTTGTTAAGAAGTCAAAAGCCTCCTTCCTTAG-GGATTCCAGTCTGC-TAGGTGGGAAGAGGCCCCATGGATCCATCACAAAaggttttccttctctcctcaacAAGACACAAGTGTTCTAGCTTCTTTAAGCATCtggttgtttttgctgttttatgtTTTCCTCACACTGGGGCCTACTGTCTTTATTCTTTATGACTCCAAGTATGATTTaatgcatacatttaaaaa-tggaagaacaaCTTCTTAAATTTGCAGTAAATGTATTGTTCAATAGATTTGATTTACTAGTTATGAGCCATAGAAGAGCTGCCTTGGCGATTTATTGTGATATTGTCTTAGGCACTGGTGTCACTGCCTCAATCTGTTCTGACCC-----AAAAAAACTAATCCAAAAAAGGGAAGATCAATGGCACATCCTGGCA-CAGTATGGATTGTAACTACC--ACGCCCTGCTCTGTACATGAGGCCCCATTTTGGATGATATGAT---AGCTGGTGATAAGAGGTAGATATAGGGCCCTTGAGTTTAGTAGTATTTGTTTCTAAGCGATTGTTTGGAGTCTAGGCAT-CATAGCTTGTGAGAGATTTATATGGCTCCACTTGCCTCCCTGCCAACAGAGCCAGGGGAGTTAAGTAgatggaatgtgtgtgtgtgtggtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcaagGGAGAGAGAAACCAAGATTCATAATTTAAAAGGATTTGGAAGGGTC-AGCCTCCAGAAGAGtctctgcttttgattctcaTATGGAAAACGTGTACACTTCACTCATGATGGGTGGGAAGTGT-GATAAATTTCATGCAGAGGGCGAGGGGTGAGGGAGGAATGCTTCTGAGCCAAGCCCTATATATGGGTGGTAGGTAAACAGC---------GAAGGAGAGAGTTCCTAAAGAAGGAAGAGTCTGAGAAAACACTCA-------GGGTTAACAAAAACCTGGCGGT

a score=25026
s chr3           105445456 1196 + 160039680 AAGAGGAGGCAATGGAAGAAATGTCTATGGGGTAGA--CTCTGATCTCACACATT--CTGAGGGCCAA-GTGTGCACTCATCATATC-AAAGAGCTTGGGTGACTTGCCTCAAGTTCATGAACAGCATTTGAAGAACTGTGCTGAATATTTCAAAGAACTGGTTTCAGTCATGTCTAGACTCAGCTACAATATCATAACAGCTAACATTTTCATTTATAATTGCATGTGAGGCGTG-TTTCCACTTAGTATGACACCATCCTTGTGAATCCTAAGATATGATGCCATCATTAAAACTCAGTTTTGCAGGCGAGGGaaagtcat---actgctggtagaaagagtcaaactttgaagcctggtctatccagaaacgatgctctcccactaagcctccactgtTCTGGATTTGTTGATCTCATAT-----AAGGTTTACT-TCAAATCCAGCAGCCTTCAGTCTTGGTGTTTT-TTAAGCCACA--------------------------------CTT-------GTCTTTATGG---------TCACTGCTGCAAAGAAACAGGGACATTGC-AATTGACTGTGTCCTGGCTGTTCCCAAAGAGGTGATGTTCTGAGGATGTGATTCACATCTTG-TAGGGTAGaattaaaaaaaaaaaaaaaaaaGGAGTCTCTGTAAACCAGTCTGGTT-----AAACACTGGCCCAGTCTTCACAGGCCAGAGCAGCTGAT-CCCAGGCTAT----------AGCCTTTCC----------CTGGAA-AGAGGATGTGATGGGGGTTCTTTTCATCTTGGATCAGCC-CAAATTGAATACCCTTGTCTTTTTTTCTCTCCCCATTGTGTCTCCATGCCCATGTTTGAGATCCATCGAAAAGGGACTTGGACACAGACCAGATGGCAAATCTGTCACCTATTCTGCACACTCAT----AATCAAGGGAACTACAGGAGTGACTGTTAGAATAAGTCATCATCTAGATG-CACTGAGCATCTCCCATGTGCCTCACGCTGTGTCAGGAG--TCAGAGCTGGCTGAGACCGAGTCCTTGCCTT--ACCACATAAAGGCTAGAAAGAGAC---ATCGTGTGCAGACAAC-TAAGCCTGTGCAGTACA---GATGGGAAGAACTACCCTTAGGATACACAGGAAGGACTGCAGAACCCAGGAAGTGCGAATAGTCGGTTCATCTGGGATGCAG-GAAGGACTTTATTAAAACTTAGAATGTAAACTTTGTG--CTGGGTATTTAAGGTTTGAGACTGAGTAAG-GTCAGCTAGGAAAAGAGTG
s HiC_scaffold_1 116049944 1218 - 233722169 AAGCAGAGGCAATGGAA-AAGGGtctaaaagaaaatttctctgatTTCACCCATTTCCTGAGGTCCAGTATGAACAATAGTCACATGGAAATCACTCTAGTGACCC---------------ACTACATTTCTGGAA----GCTG--TGTCCAAAAGAGCTGGTTTCAGAT----------------------TCACAACAgc---ccttttaattctt--ttgcatatgAGACATGCTTTATGGATTATCTGACTCCATCCGCCCATGCCCTATGAGTTGATGCCATTGTCTGAACCCA-TTTTGCACATGAGGGAA--TCATGCAACTGCTAAATGACACAGCCAACATTGGAAGCCAGGTCTGTCCAGAGTCCATCTTCTC----GAAGCCTTCAGTGTCCCAGATTtgcagatgtggtatttttgcagGTTTATTCTTAAAATCAGCAACCTTTGGTCTTGGCATCTCCTTGAGCCATGTCAGAGTTTTGGCTAAATAGTTTTTGACAGGCCTTCATGCAGGTCTTTATGGGGAACACAGTCACAGCTGCAGGCAACCAGGGACATTTCCAACTGACTATGTCCTAGTTGTTCCCAAGAAGGTGATGTTCTGGGGATGTGATTGACGTCGTGCCAGAGGGGAATGAAAACAAC--------------TCCCTGAAAACCAATCCAATTCAAGAGAACGTTGGTCAGGTCTCTGTAGGCAGCACTGACTGATGCTCACTTTGTAGATCCCAAAAGCCTTTTCTCGCTCCTTACTGGACTAGCGGG---GGTTGGGGCCTTTTTCACTGAGGATCAGCCAAAAATTGAACACCCTTGTCCTTCTT----------CTCTGTCCTCATGCCAGTGCTTAAGACCAATC-AGGTGAAACCCAGAGACTAATCAGTTAGCAAATTCCTCACATAATCT---CAGTTATATACAATCAAGGGAGAGATGAGAATGAAGGTTCAAACGAATTCTTAGTGAAAAGTCATTGAGCATTTGCAGTGTACCAAACACTGAGCTATGATTCTCAGAAATGGCTGAGAAATGATCCTCACTTTGAACAATTTAAAGGCCAGGAAGGGACCCTACCGTG------CAACATAGGTTTGAAGGCCACATAGGTTGGAAAGAGCCCAGCTTGAGGTACACAGAAAGGATCGTGGAAGCCTAAAGTAGAGAATGGTTAATTATCCTGGGCTTGAGAGAAGGACTTAAGCAACGTTTGCTGTGTGACCTGTGTGACCTGGGTGATTACGGTTTGAGGCTGAGTGGGAGTTGGCTAGGAAGACAGCG

a score=421326
s chr3           105448922 12428 + 160039680 [encoded data, 13423 characters]
s HiC_scaffold_1 116052206 12337 - 233722169 [encoded data, 13423 characters]

a score=9652
s chr3           105458890 1051 + 160039680 CCCATGCCCCTAGCT-CCAGCGGACAAGAACAA--GCGGCAAGACGAGCTGATCGTCCTCAACGTAAGTGGACGACGGTTCCAGACCTGGAGGACCACTCTGGAGCGCTATCCCGACACCTTGCTGGGTAGCACAGAG------AAGGAGTTCTTCTTCAATGAGGACACG------AAGGAGTACTTCTTTGACCGTGACCCGGAAGTGTTCCGTTGTGTGCTTAACTTCTACCGCACCGGGAAGCTGCACTACCCACGCTATGAATGCATCTCTGCCTACGACGATGAACTGGCCTTCTATGGCATCCTCCCCGAGATCATCGGAGA-CTGCTGCTACGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGGAGCGGCTCATGGATGACAATGACT--CTG-AAAACAACCAGGAGTCCATGCCCTCTCTCAGCTTCCGTCAGACCATGTGGCGGGCCTTCGAGAACCCACACACCAGCACCCTGGCACTGGTCTTCTACTATGTGACTGGCTTCTTCATTGCCGTCTCGGTCATCACCAATGTGGTGGAGACGGTGCC----TTGCGG------------CACCGTGCCTGG---GAGCAAGGAGCTGCCGTGT------------------------------GGAGAGC-----GCTATTCGGTGGCTTTCTTTTGCCTGGACACTGCCTGTGTAATGATCT---TCACAGTGGAGTACCTCCTCCGACTCTTTGCGGCACCCAGCAGATACCGCTTCATCCGCAGTGTGATGAGCATTATCGACGTTGTGGCCATCATGCCCTATTACATTGGCCTGGTCA----------TGACCAACAATG-----------AGGACGTGTCTGGGGCATTTGTCACACTCCGGGTCTTCCGT---------GTCTTCAGGATCTTCAAGTTCTCCCGACATTCCCAGGGTCTACGGATCCTGGGCTACACCCTGAAGAGCTGTGCCTCAGAACTGGGCTTTCTTCTCTTCTCCCTTACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCTGAG---AAGGGCTCCTCTGCCAGCAAGTTCACAAGCATCCCTGCATCTTTCTGGTACACCATAGTCACCATGACTACACTGGGGTAAGTCAGTA-----CCACTGACC
s HiC_scaffold_1 117602094 1092 - 233722169 CCCGCGCTCCCGGCCGCCGGCAAGCAAGGACTGCTGCGG------GAGCGCGTGGTCATCAACATCTCGGGGCTGCGCTTCGAGACGCAGCTCAAGACCCTCTGCCAGTTCCCCGAGACGCTGCTGGGCGACCCCAAGCGGCGCATGCGGTACTTC---------GACCCGCTCCGCAACGAGTACTTCTTTGACCGCAACCGGCCTAGCTTCGACGCCATCCTTTACTACTACCAGTCCGGGG-GCCGCA----------------------TCCGCCGGC--CGGTCAACGTGCC--CATCGACATCTTCTCGGAG-------GAGATCCGCTTCTACCAGCTGGGCGA------------GGAGGCCATGGAAAAGTTCCGTGAGGACGAGGGCTTCCTGCGGGAGGAGGAGCGGCCCCTGCCCCGCCGCGACTTCCAGCGCCAGGTGTGGCTGCTGTTCGAGTACCCCGAGAGCTCCGGGCCGGCCCGGGGCATCGCCATCGTGTCCGTGCTGGTCATCCTCATCTCCATCGTCATCTTCTGCCTAGAGACGCTGCCCGAGTTCCGAGATGAGAAGGACTACCCAGCCTCGCCATCGCAGGATGCCTTCGAGTCAGCCAGCAACAGCACGTCGGGGCCCCCCGGGGGAGCCTCCAGCTTCTCAGATCCCTTTTTCGTAGTGGAGAC--CCTGTGCA-TCATCTGGTTCTCTTTTGAGCTGCTGGTGCGTTTTTTCGCTTGCCCCAGCAAAGCCACCTTCTCAAGAAATATCATGAACTTAATAGATATTGTGGCCATTATTCCTTATTTTATTACTCTGGGCACCGAGCTGGCTGAGCGACAGGGCAACGGACAGCAGGCCATGTCCCTGGC------CATCCTCAGGGTCATCCGTCTGGTGAGGGTCTTCCGCATTTTCAAGCTCTCCCGTCACTCCAAAGGGCTGCAGATCTTGGGGCAGACATTGAAGGCTTCCATGCGAGAGTTGGGCTTGctcatctttttcctctttattgggGTTATCCTTTTCTCCAGCGCGGTCTACTTTGCGGAGGCAGATGACCCCACTTCGGGT---TTTAGCAGTATCCCAGATGCCTTTTGGTGGGCAGTGGTCACCATGACAACAGTTGGTTATGGTGATATGCACCCAGTGACC

a score=7755
s chr3           105458924 1000 + 160039680 GGCAAGACGAG---CTGATCGTCCTCAACGTAAGTGGAC---GACGGTTCCAGACCTGGAGGACCACTCTGGAGCGCTATCCCGACACCTTGCTGGGTAG-------------CACAGAGAAGGAGTTCTTCTT-----------------CAATGAGGACACGAAGGAGTACTTCTTTGACCGTGACCCGGAAGTGTTCCGTTGTGTGCTTAACTTCTACCGCACCGGGAAGCTGCACTACCCACGCTATGAA-------TGCATCTCTGCCTACGACGATGAACTGGCCTTCTATGGCATCCTCCCCGAGATCATCGGAGACTGCTGCTACGAGGAGTACAAAGACCGCAAGCGGGAGAATGCGGAGCGGCTCATGGA-----------------TGA-CAATGACTC------------------------TGAAAACAACCAGGAGTCCATGCCCTCTCTCAGCTTCCGTCAGACCATGTGGCGGGCCT---------TCGAGAACCCACACACCAGCACCCTGGCACTGGTCTTCTACTATGTGACTGGCTTCTTCATTGCCGTCTCGGTCAT---------------CACCAATGTGGTGGAGACGGTGCCTTGCGGCACCGTGCCTGGGAGCAAGGAGCTGCCGTGTGGAGAGCGCTATTCGGTGGCTTTCTTTT-----GCCTGGACACTGCCTGTGTAATGATCTTCACAGTGGAGTACCTCCTCCGACTCTTTGCGGCACCCAGCAGATACCGCTTCATCCGCAGTGTGATGAGCATTATCGACGTTGTGGCCATCATGCCCTATTACATTGGCCTGGTCATGACCAACAATGAGGACGTG-TCTGGGGCATTTGTCACA--------------------CTCCGGGTCTTCCGTGTCTTCAGGATCTTCAAGTTCTCCCGACATTCCCAGGGTCTACGGATCCTGGGCTACACCCTGAAGAGCTGTGCCTCAGAACTGGGCTTTCTTCTCTTCTCCCTTACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCTGAGAAGGGCTCCTCTGCCAGCAAGTTCACAAGCATCCCTGCATCTTTCTGGTACACCATAGTCACCATGACTACACTGGGGTA
s HiC_scaffold_1    905202 1087 - 233722169 GACAAGATGAGGAACTGGTCAACTTGAACGTGGGGGGCTTCAAGCAGTCTGTGGACCAGAGGACC---CTGCTGCGGTTCCCTCACACCCGGCTGGGCAAGCTGCTCACTTGCCACTCGGAAGAGGACATTCTAGAGCTGTGTGATGATTACAGTGTGGCTGACAAAGAGTACTACTTCGATCGGAACCCGTCCTTGTTCAGATACGTCTTGAACTTTTACTACACGGGGAAGCTG-------CACGTCATGGAGGAGCTGTGTGTGTTCTCCTTCTGCCAGGAGATCGAGTACTGGGGCATCAACGAGCTGTTCATTGGCTCCTGCTGCAGTAGCCGCTACCAGGAGCGCAAGGAGGAGAGCCAGGACCGAGACTGGGAGCAGAGAAGCAACGACGTGAGCACTGACTCCTCCTTCGAAGGGTCTTCTCTCTTCGAGAAGGAGCTGGAGAAGTTCGACCAGCTGAGGTTTGGTCAGCTCAGGAAGAAAATCTGGATTCGGATGGAGAAC-------CCCGCATCCTGCC-----------------TGTCAGCCAAGCTCATTGCTATCTCGTCCCTGAGCGTGGTGCTGGCCTCCATTGTGGCCATGTGTGTGCATAGCATGGCAGAGTTCCAGAACGAGGA---------CGGAGAG-----GTGGATGACCCTGTGCTGGAAGGTGTGGAAGTCGCGTGCATTGCCTGGTTCTCGGGGGAGCTCGCCATCCGTCTGGCTGCCGCTCCCTGTCAGAAGAGGTTCTGGAAGAATCCCTTGAACATCATCGACTTTGTCTCCATCATTCCCTTCTACGCCACGTTGGCGGTGGACACCAAGGAGGAGGAGAGCGAGGACATCGAGAACATGGGCAAGGTGGTTCAGATCCTCCGGCTCATGCGGATTTTCCGCATCCTGAAGCTTGCCCGGCACTCAGTGGGACTTCGGTCTCTTGGGGCCACACTGAGGCACAGCTACCATGAGGTCgggctgctgctgcttttcctttCTGTCGGCATCTCCATCTTCTCCGTGCTGATCTACTCTGTGGAGAAGGACGAGCTGGCATCCAGCCTCACCAGCATCCCCATCTGCTGGTGGTGGGCCACCATCAGCATGACGACTGTGGGCTA

a score=9842
s chr3           105459488 436 + 160039680 CTTTCTTTTGCCTGGACACTGCCTGTGTAATGATCTTCACAGTGGAGTACCTCCTCCGACTCTTTGCGGCACCCAGCAGATACCGCTTCATCCGCAGTGTGATGAGCATTATCGACGTTGTGGCCATCATGCCCTATTACATTGGCCTGGTCA------TGACCAACAAT---GAGGACGT---------------GTCTGGGGCATTTGTCACACTCCGGGTCTTCCGT---------GTCTTCAGGATCTTCAAGTTCTCCCGACATTCCCAGGGTCTACGGATCCTGGGCTACACCCTGAAGAGCTGTGCCTCAGAACTGGGCTTTCTTCTCTTCTCCCTTACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGC---------TGAGAAGGGCTCCTCTGCCAGCAAGTTCACAAGCATCCCTGCATCTTTCTGGTACACCATAGTCACCATGACTACACTGGGGTA
s HiC_scaffold_1 117667524 469 - 233722169 CTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCTTTTGAGTTTTTGGTGAGATTCTTTGCCTGTCCCAGCAAAGCAGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCCATTATCCCCTACTTCATCACCCTGGGAACAGAGTTGGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCAATGTCACTGGCCATCCTTCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACATTCCAAAGGTCTCCAGATTCTAGGTCAGACCCTCAAAGCCAGCATGAGAGAATTGGGCCTCCTGATATTCTTCCTTTTCATTGGGGTCATCCTTTTCTCTAGTGCTGTCTATTTTGCAGAAGCCGATGAGCGAGATTCCC---------AGTTCCCCAGCATCCCAGATGCCTTCTGGTGGGCAGTCGTTTCCATGACAACTGTAGGCTA

a score=8157
s chr3           105459490 434 + 160039680 TTCTTTTGCCTGGACACTGCCTGTGTAATGATCTTCACAGTGGAGTACCTCCTCCGACTCTTTGCGGCACCCAGCAGATACCGCTTCATCCGCAGTGTGATGAGCATTATCGACGTTGTGGCCATCATGCCCTATTA------------CATTGGCCTGGT--------CATGACCAA----CAATGAGGACGTGTCTGGGGCATTTGTCACACTCCGGGTCTTCCGT---------GTCTTCAGGATCTTCAAGTTCTCCCGACATTCCCAGGGTCTACGGATCCTGGGCTACACCCTGAAGAGCTGTGCCTCAGAACTGGGCTTTCTTCTCTTCTCCCTTACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCTGAGAAGGGCTCCTCTGCCAG----CAAGTTCACAAGCATCCCTGCATCTTTCTGGTACACCATAGTCACCATGACTACACTGGGGTA
s HiC_scaffold_1 117779423 461 - 233722169 TTCTTTGTGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTCGTAGTGTGCCCCAGCAAGACGGACTTCTTCAGGAACATCATGAACATAATTGACATTATCTCCATCATTCCCTACTTTGCAACTCTCATCACAGAACTGGTTCAGGAGACAGAACCAAGTTCTCAGCAGAACATGTCCCTGGC------CATCCTGAGGATCATTCGGCTAGTGAGGGTCTTCCGCATCTTCAAACTTTCCCGCCACTCGAAGGGGCTACAGATCCTGGGGCAAACACTGAAGGCTTCTATGAGAGAGTTGGGGCTGCTCATCTTCGTCCTCTTCATTGGAGTCATCCTCTTCTCCAGTGCAGTCTACTTTGCTGAGGTAGA----TGAGCCAGAGTCTCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCAGTGGTCACCATGACAACTGTAGGCTA

a score=83958
s chr3           105462375 2731 + 160039680 AGATAGCCTCAAGATGTGTGATATTCTATTCTAGTCGCATTGCTAGTCAGGCAAG-ATCAGCTTGCTGAATGTTGTATGCCAGGCCCTGACCTGGACACACAGAGAC----------------------------------------------------------------------TGGACA-----------CAGCATACATTTCCTTCTGCACAGGACAGAAGATGTCATTAGAAATCAATGGCTGCTTTC-ATAGCTAAACTTGGGATTTTGCCACTGTTTTTATTGTGGGGTAATAGTTGGTGCCATTGAGTGTTCATC-TGTAGAGGCAGATGCAGGTTCAGCATCAAGGGTAGAGTGTATTGGCCTCAGATTTACGTTCTTGGAGTAGTG-CAGGACGCAGGCAGGCTACAGGAGAAGGTGTGTGAGAAGGGAAAGCATGGAGAAGGTGTGTGAGAAGGGAAAGCATGGAGAAGGT-GTGTGAGAAGGGAAAGCATCCGCCTACACTGGAGATGTCTGTGGCTCCCCTATAGGTCCTG--GACCTCCTCACCCCACTCCC--CAATGGCAAACAGGTTTGCTTCTCCATCCACAATGCTCTGAACTGTCTAGCTTCTG-AGAAGT-----GAACTAAATGAGCTGGAAAAGAAACTTTTAGTCCTCTCTTCCTTCAATTCAGACAAGTTCCAAGGAAGCCGTTCTTTTTCTTCCTTCCACCCGTCTGATTGTGGCTGTGTGCAAGATCAAGCTGCTTTGACTTTGACCTGAGCTGGCAGTTGGCACCATTACCAGGCTCCTTTGTTTGGCTATACATAGCAGGTGCTTGACAAAACGCTTTCTAATGGAGGGGTCAGTGTAAATGGGGCACCTTCCCCATTTGTTTGGTCTGATGTCGTTCTCAGTCTCTCCTAGATGTATCTGTCCTTTCTTGAGGGTAAATGTAAGGGTTGAGCCTGCAGTCCTGCAGCCTCTCCAGCCCTGGATGCTGTCTCAGCTCTGCTGTTCCAGGAGGGCGGAGACT---------TGGTGACTGATCTGTCCACTGAGATGCTCTA-AGGGCCTCAGTTATGTTCATGCCCTTACTAGGGGACTGTCTGGCTCAACC-TGGAAAGCTTTCCCTTCCTCCTGGCTGATTTCTGTTCAAACCACATTCACTGGCTGGCTGGTTTTAGCCCTGTTGCACCATTGCAGGAAGTTCATCTTTTTCCTAGTCTATATTGA-ATTTGAAACCCATGTGACTAGAAACTATGACGGACCAAC--TCTGCAGTGGTCCAATTGCCTCCAGCCAATCCCAGCTG-------------TCTGCGGCC----CCTCCCGGCCCTACTCCTTCCA-GAGCTCCCATTTCTATCC----AACAGCATTGTCCTCAGCTCTTTCTGAGAGCAGTGTCAGCCAGCATGCTCAGAGGCAACATAAATG---AAGGTGTTTGCTCTGCCGGGCTCAGGTTGCCATCTCTGCCTGCTTTCCCACTACCTCGCTCATGTGTTAGTAGATGTCCTCCAGGGAAGGATCTCCTGAAGCCAATTATCACCATTTATTTAATATTTCAAAATACTTTAAGCACACAAGAACAAATGACAGCTCAAATTATCACCCAGGCTTGAAGATGTCTTTCCTCAGCAGGCTCCTGTGCCGGTAGGAAAGACCCCTGAGCTGTGCCCAGGTTCCCCTTGGGCTCCCTTGACAGTTGAGCTCCTAAATGCACCATTCAAGGATTAATTTCCGTGTTCATAATTGATGCTATAAATAAAACAaatccccaattatctcagttaacagagggaagggataacgtggaactcccaatattaaataagaccaacataactagttt----gggaatgtattctatgaggtgagttttgtcaaagcaaatttcccttcttaattttgcttagctttgattagtattatggtggatctggactggctgagcaAGTCC-TTGGGGCAACTCAGGTGAGGCCATGGGGAT---GCAAGAATTTGGGAGCGTCT---GGGTATGTGTCCACAGGGGCTGTGGTGGGCTGGAGAGCAGCTTCAGGCCTGGATGGGCTGGACAGTTCTTGGACATCTTAAGCTGGAGGACTGTGGGGAGATAGGCTTGGAAAAGGCTGAGGAAGGTATGGAGCAGCCTCTGCTCCACA---------------CCGATGG-TGGCTCACTTACATAATTGTCATCAGCAGCCTGTCTGTCACCTTGTGCTCTGAGATGAGAGCATTTTTGACAGTGTCCAAAAATCACTTTAACAAAAGCAGAATCGATTTTTTTAAACTTCTTCCAAGCATGAAGCAGTCTTCAGGTGGTTTGCATTTCCCTTTAAAACCTTGCCCTGAAGAGAGCCTGTCTGAGGTTCCAGAAGGCAGAAAGGCTTGGCTTGG-AAGTAGAGAGAGCATGGA---AGGTTGGGGCTCTTGATCAGACCCCCCCCCCCTGTGCCAGATATAAAGCTTGTGTGAGATGTGGTTTTTGTTAACTCTACAGTTCTCAAGATTCTGTCTATACTTT----CACAGGGATCA------CCAATACCTCAGTCTAGATACCGGCTGACGA-AGTTATCTATGTGGGGTGGACT----CCCTGCTCATATTT-TTGCTTCCTGATAATGAATGTCCTGCAGGTCTTTTCTTTGTTAGCA----TTTCTTAACTGATAGTTCCCTGGTGCTGGAATTCCCAAGAGAGGATGCAAACTTACATCTCAACAAAGGATCTtccatccattcaatgtttg-tgaatgcctactgtgtacccgagggcattgttgactctcagaatacaCAACCACTATAATTGTGTAGCAGTCCAATGTGAATC--------AGCAAGATGAATCAAAC--ATCTCCCTTCCTCAGAA
s HiC_scaffold_1 116064760 2732 - 233722169 AGATGGCTTAAAG--GTATGATATTCTACTCTAGTCAC--TGCTAGCCAAGAAGGTATCAGTCTTACAATTTCTAAATGTCAGTCATTGTGCTAGGCACACAGAGGCATCTTCCACCCTTCTAGACTGATCCTGGCCATCCCTTTATCTTTCATGGCCAAACAGCCTATCCTAACTCTGGGCATGATCCTTATacattaaacatttccttctagTTTGTTTAAAATACTGCCTTAGAAATGAATGGCTTTTTTTTATAGCAAATTCTAGTATTTTACTGGTGCTGGTATTGG--------AACTGATTTCCTTTGGCATTTGCCCTGTGGATTAAGGACTAAGTCCAGCATCAGTGGGTGAACA-GTTAGCGTCACATTTACTTTCTTGAGGTGGTGGTGGGACTCTGGTAGA---------------------GAGTGATGGCATCAAGAAG-----------------------AGAGGGTTATCTGCGTTGGG------------------GGAGACATTCTTTCTCCAACTGTGGGCTCTGTGGGCTTTCTCACCCCACATCTGACAATGGCtaa---gtttgtttttccttccccAG-GCATTAAAATATCTAGTTTGGGGAGAAGAACTAAGAACCAAGTGGACAAGAAAGGAAACCTTTAGTGGTGTCTTCCTTAAACCCAAATAAGTTATGAAAAAGAG----------CCCCTCCAAACAGTTCAAA-----------GCTAGATCAGGCTACTTTGACTCTGTCCTGAGCTGGCAGTTGGCACCATTATCAGGCTCTTTTGCTTGACTGTACATAGCAGATGCTtggtaaaatgttttttaatgaatGTGTCAAAGTAAATGGGGCACCTTCCCCATTTCCTAGGCCTGATAGACTTCTCAGTCCCTTTTAGATATATCTATTCTTTCTTGAGCATATATGCAAGA------CCGTCAGTCTG----------------TGTGCTCTGCTCTAGCCCTTGTGCAACAGGAGAGATGAGAGCACCCATTGCTGGTGACTTATTTATCCAGTGAGATGCTCCACAGGACTACAGGCATTTTCGCATCCTGACTGGAGGCCTCACTGACTTGACCATAGAAATCTTTCCCTCTCCACTGAATGGTTCTTCTTCTGACCACACTCCCTAGTTAGTTG----TA--CTTGTTCAACCACTGGAG-AAGCCCATCTTTTTCTTATTCCACACTGGCATTTTAGCCCCAAGGGGCTGTGGAATAGTAAAAGCCAATATTCTGCCGCATTCTAATTGCTTCCAGCAGCTTTCAGCTGATACCTACCTCTTCCTGAGTCCTGACCTTCCCTTTTCTGCTCCTTCCCCAAGCTCCTATTTCTAGTCTGGGAAGAG-GCTGTCTTCAGCTCCTTTGCAGAGCAGGGCTGGCTGACCTTCCAAGGGCCGTGTTCTGTGTGAAAGGATCCCACTCTTTCTGGCTCTGGTCGCCCTTTCTG-----TTTCCCAGAACTTCACT-GTGACTTACAAGGTGTCCTCCAGAGGGTGATCTCTTTGAGCCAGTTATCACTGTT-ATTTAATATCTCAAAATACCTTGAATCTACAAGAACAA-TAAGAGCCCAGATTGCCATCTGGGCTTGTGGATAGTTTTCTTT-GCAGCTTCCTGTGCTGGTGGGAAAGACCCCTGAACTCTGCCGAGGTTTCCCTGTTGCTCCCTTGACAGCTGAGTCCCAAAATGCACCATTCAAGGATTAATTTCTGTGCTAATAATTGAtgctataaataaaacaaatcccCAATTATCTCAGCTAACAGAGGAAAGGGATAAC--AGAACTCCCAATATTAAATAAGATCAACATAACTAACATAACGGGGAATGTATCATATGACATAAACTTTTTCAAACTAGATTtcccattttaattttacttaacttTGCTTGGCATCAGAGTTGGCCTGAACCATCGGAGCCAGTCCATCGGGGCaggtggagggaagggaggaggattAGGTATGAGGGGAGGAAAGCCTTGAGAGCAAGTGGCAGTAAGGGCT---------------GCAGCTCCAGGCCTGGTGGGATGGGGCTGCTCTGGGATATGTTA--------------GGGAAGGGAAGTTGAGCA-----TGGGAAAGGTGCAGAGCAATGTCCACTCCTGATAAGATGACTCATTGCCGCTGGTTGGCTCA-TTATATAATTGGGATCGGCAGCCTATGTGTCACCCCATGCTTTGAGATGAGAGCACTTTTGACAGTGTCCAAAAATCACTTTAACAAAAACAGAATTGATTTTT----ACTTCTTCCAAACATGGAGCAGCTTCCAGatgatttgcatttccttttaaaatgcaatCCTGGAAGGGGCCTGCCTGAATTTCTAGGAGGCAGAGAGGCTCAACTTGGAAAATTGAGACAGGATCAGCACAGGTTGGGGTCCTTGACCAGGCATCCCCACTC----CCAG--GCAGAGCTAGTTTGAGAT-TCATTTTTGTTAACCCTTTAATTTCCAGAATTCTGTCTGCATCTTTATGCACTGCCATCAGGGCGTTAAGTGTCCTGGCCTGGACACTAACTAACTATACTTGGCTGCGTGGGGTGGGTCCCTACCCTGGCCATGGTTAATGC--ACTGGGAACAAATGACCTCAgattcttttgtttgttggtatgTCTTTCTTAGTTGATAGTTTTCTGGTACAAAAATTCCTAA-----GATGCACACTTGTATCCCAACAAggaatctttcattttttcaacaTTTGTTGAGTGCCTATTGTGCACCAGACAGCATGGTAGA--CTGAGAGTACATGAGGACTGTGATTACACATTGGCCCAATATAAAGTACAGGAAAAGCGAATTAAATTAAACttacttctctttctttgaa

a score=103683
s chr3           105466251 4429 + 160039680 [encoded data, 5053 characters]
s HiC_scaffold_1 116068788 4656 - 233722169 [encoded data, 5053 characters]

a score=61476
s chr3           105471554 3370 + 160039680 GAAACTGGAGCGTGTTTCCTGAGAAATGAAAAAA---ACCTTCCTGGCATTGTCATGTGCAAAGGAGAG----AAAGACACAAT----------GATATTGCAGG----------------GTTCATGTATAAAAGTTATGAGAGAGAAGGATGAACATAGAATGTAAGGAAGAAAATATCTAAGGGCAGGGAGACCAAGCCAGTGGGCATAGGCACGTGGGAACTC-AGCTTGTCTGGGCTTGTGGAGACATGGACGCTGGTGACAGGCAGGTGGGGAGGTTAC--ATAGGCAAAGCACA-GCTGATGGGAAGGGGGAAGACAACACAGGCAGAGATGGGAAT-TCCACTACACTGCAAACT--------------------CTTTCTTCTC----------CAAGGAAA---------TACACATACTACATAAATATC-------------TTTTATGATAACTTTTTCAAAAAAAAAAAAAAAAACCTATTCCCTTGCCTGAAGAATTTCTGGTCCCAAGTGGCCT----------------TGT----TTGGTGGCATCCCTAACCATTCCAGAGGCCTTTGGGCACTTCTTATCCTTCTAGCTGGCCCCTCCCA-GCCTCCTAAAGGTATCACAACT---CAGCCCAA-------------------TTCAGAGTTGAGGGACACTGGCCTGCTAGGGA--AGAGGGCTGTGTTC--TTTTGCCTCCTG------TCCCTGCCTTTCCTCACCCTTAGCAACTGGCCCTTTGTAGTAGAACTGTGACTACTTTTACTTCCACAAAGATGGGAATGGGGAGA-GGAGAAGTCACCTGGGGGTTGTAACCCCTGAGTTATCAAGGCCAGTGCTGA-TCCTTCCTTGAAGAACCCTGGTG-CCAGGTATGGATAGTTTTA--------GTTTTAGGTATTCCCAGGAGTATGGCTATGAGACTGTTC-TGCCTCTTTGGTGC-ATTCTTGCATGGGAGAGATAGAAAAGGACAGTATACAGTATTCAGTATGTGATGATCCTAGGCTATTTCTGCATTC----CCTTCTTTCTTGGCCCCTCTCTCT---GCCTGCAAAAACTCCTGGAAGCTGTCCCAAGATTTCTGCACCTGAGA---------AATGTCTTCAGAGTCATAGTGACTCCAGCCTCCAGCC---------------------TCCAGCCCCATCTTCTCTTTCAACAGGAGTGTTTCAAGCAAGCAAGGGGTGTTGTGTCAGTTAATAAAACATTCTCCTGCAGCTGGACTGGCACACTCAGAGCTTGGGCAGAGCTTAGGGAAAGATTAGGAAACTCCATGCCCACTCCCTGCTCCCCACCCCTACACCATGCCTGACTTCC-GAATATCTCCATGTAAGGGCAGCTTCTCATCTGAGGAGGAGAGGCTGTGGAGTCCACTCTCAGAGTGCAGTACTTTATGCCTGAGCTGGCTTATGTGAGTTGGCCAAGTCCTACAGCTGGGGTGGGGCTCTGGGGAACagtagaaagaccaccagattggaaaccaggggaggtgattttagaactagctttggga-actatgtgaccttgggaaggctatctctcttctcttgttgttagtatcttcttctaaatgatgagagggatgtatttggtgacttctcagttcctagctagctACTAAAGCCCTGAGCCCTTTCTGCTTCCAAGGAAAACAGGTCATTAGCCTAGTAGCCTGAGTTATCAACA-CCAGAAGAACTGGCCT------------------------------------------------------------------------------------TTAAACGGTCAGACA---------------------------------CTTGGCAACCTTCCCATTTCTATCTCTTCTTCTCT---AATAAGAAGTT--AAGAATCCTTATCCAAAGTCCCCCAATGAAGTGCAAGTGCACGGGGAGGCC--TGAAGGCCTTGCTTGGAGACCCTCTTCCTAGGAAGCCTTCAGGAACTTG--GGGTAAGGAATAGGTTATAGTCAAGGTCTGTGCCTGTTGA--------------AGCCCTGC---TGGAAAAAGCAAGGAGTTGTGAATTCAGTTCTCTGGGATGATCAGTATGGCCATGAGAGT----GGCGTCAGGTATCAACCCTGTGG-CAAGGGCCTTTTAATGG-----------------------------GACTC------------------GTTCACTGTCTCTCTTCAGGGTTGGACTTAC--------CCACTCCAGCAGAGGGCATCCAGTCTGCCTCCATGGTTCTGGTGATGGGGAGCTGCTCCTGTCTGCTATGGTCTGTTTCTTTGTTGGCAGAAGTCTGGGAGGAGTCAGTGATTATAG--GGCTCTATATACAGAACCCA-----TTTTCCTCCATTTCATCCAGAAGAACAAGGGCTTGGAGGAACCAGAAGACTCTCTTAGAAAATAATTCTGGAAGGCAGGGATAAACAC-----AGAAACCACATGGAGACTCAG------------------ATATCTGTCCTGGGATAAA--CAGGGTGACCTGGTCTCAGTAGAGT-----------GTGCATGGAAGCTTCTAGGGTGAACCACCACCCAGGGTCCTTGCTAGACCTGTGGGATAAACATTCAAGAACCTATGCAATATGGCTGGCT----TGTGGGAGTGACTGGACCCACC--------ATACTGTCTCCCA-CTACTCACTGCT-TGGGCACCTCCATCTTTTCCATACCCCACCTTCCTCACCAACTTATTTTTCTTATACTGTTATCATGATTGCCTGCAAATGGCCCTTCCTTTTTCCACTTCCTTTATTTTATTGCATGAATTCCCCAGAGGAACACAGTAAAGTCTATAAGATACTACCCTACACATCTATAGTGTAAGCAGCATGACTTACCTTACTTTAAGTTATTTGAATGAAACCAACCATTAAATGTTCACAGAGGATGAGGAAATA-GTAAGCTTGCAGGCTCCCTTGGGGCTGTGAGCCTCCCATTGACTTTCTTTTCAGTGCAGGGAGAGGATGAGGCACAAATG--AGGTGGCTAGGGTCGTTACAGTAA-AGGGAGCCATGTAGAAATGGTGAAAATATtctctctctctctctctctctctgtctctctctctgtctctctctctctctctgtctctctgtctctctgtctctctgtctctctctctctctctctctctctctctctgtctctctctctctgtctgtctctctctctctcCTGGATCCAAAGGCCTGAATTACATAGCCCTGATTTCAAGCAGCTTTGGAGAGACTCTGATCTTAGACTCCAGCAACAAATAGACTCCCACCCCCAGACAGCACATATAAGGAGCTCAAT-GATGGCCACTAGCTCTTCTAGCCTATCTTGTGACCCCGTGTTCCTCTCCAAGTAGAGTGAGAAGCACCAGCAATGGCCTGA-TAAACACACTGTGCGGGAAAACTTT--AAGCTGAGTAAGACTAGACAGTGAGCCCAGATACAAGGGTTGTACAGTTCAGAGCATGGAGTCAAGGAGGAGCTGC------------CAG---------------------TCCTATCTGGACACGG-----CCAAGGGGTCATCAGATCTGTG------TGAGAAATCAC-AAAGAGATAGAACTGGTATGAGTCCATAAGTCGTGCCAGGAAGATGGTTTGTAGAGCTAAAGAGGAAA-----TCCAGGCTGGAGG-GAGAG-----------AGAAATGGATACTGTGCTCTTAGGGGAGGGCATATAGAGATGTGTAAGTA
s HiC_scaffold_1 116073553 3616 - 233722169 GAGCTTGAAGTGTATTTTCTGGGAGATGGAGAACTCTCCTCTACTGCCTCTGATATGGGTGGAAGAGAGGTTGAAAGAAGCAGTCCCAACCCCTAACATGCCAGGACTGAGGACTTTTACGGTCTGTGAACAACGGTTATGAGGCTGAAAGGTGGACACTGAGGCTGAAGAA----AGATCAGAGTTGAGGGAGACAAGCCCCACAGGCACAGGAGGGTAGCAGCTGGATCATGTCTGGGCTCCCAGGGACATGGACAAAGGAGATAGGCAGGCGGCAAGTGCACTGGAAGGCAAAGTACCCACTAATAAGaaggaggaagacaaga-aggaaaagaTGAGTATATTTAGTGTATTCTAAACTAGGAGAAAACTAGTAGAATACATACCTCTAAATATATGGGCaaggaaaaactttaaatatgGGTACTATGTAAATATCCTGTTTAAGTATGTTTTGTAATAACTTTTTCAGG------------------TCACCTCCTCTGAAGAGGTTCTGACCCCAGGGGGCTTATTGCTAACATCCTAGTGTAGGGTTGGTGGCA-CCCTAACCTCTC--------TTTGGGCATCACTTAACCTTTTAGCTGCCTCCTTCCTTGACTACCAGAGAGGTCACAGTCAGGCAGCACAGAAAGGCTAGTCCCCACAGTTTTGGAACCAGGGGAGACATTCTTAGTTGGGGTTGGGGGTTTATGCTCAGTCATAGGTTCTGACAGGTCCCCCGTCTTctatggcactcagcagcaggcTCCTTGAAGT-GATCTGCAAGCACTTTTGGTTCTG-AAAGATAAGAGTGGGAAGGTGGAAGTGCCTCCGAGGAAATGTCATTC-TGGGGTATCA----CAGTCCTGCCTCACACCTTGAAGATTCCAAGTGGTCGGGTACAGATTGCTCTACCTGCGTTGTGATCCTCATTCCCCCTCTGCTGGCTTT---ACTGATCGCCCCTCTTTTGTGCCATTTCTGCATGggtgaaataaagaaa----------agcataCGGTACATG-TGAccttgtggttttttttccttttcctccttctttctctgcccatttctcttctgtcttcagaAGCTGCCAGGAGTTCTCCCAAGATTTTTGTACCTGAGGTTGTGTGACCTTGTGTTCTGAGCCATGAT-ACCCCCGCCCCctgccacacacacatacacatcaggTTCCCTGCCTCCCTACTCCTACAG-AGGCTTGTCTTAAATGAGCAGAGGGCATTGTGTTGATTAATGAAACATTCTCCCACAGCCTGCCTGGCATGCCTAAAGTTCGGGCAGGGCTTAGAGTGAGATTTAGAAGCATTATACCCCATTCTACTTCCACTCCCACAAACCGTGTTTggctttctgaatattttcatgcAAGGTCAGCTGCTCATCTGAAGAAAAATGTCTGTTGTGTCCACACTCTGAGTTAGATGCTTCATGCCTGGGCTGGCTTATGTGGATTGACCAAATCCTTTGAATGAAACAGGGCTCTGTAGGACCATGGAAAGACCACTGGTTTGGGAGCCAGAG--------TGTAGGACCAGCTTTGACAGGCTAGGTGACCTTGGGCCAGTTACTTCCTCTCTCTGGCCCTCAGTATCCTCCTCTGAATGATGAAGAATTTGTGTTTAGTGAGTTCCCACTTCCTAACCAGTTACACAAACCTaaag----tttttctttcaa-gaaaatgGGTCATTAGCCCAGCAGCCTGAATAAGCCACAGCCTGAAAGACCAGCCTATAAATGAGAGGCTCTTCTGAGCCATAACATTTGCCCTCACACCATAGGTCTCCCCTGTCTCCCTACTCCCACAGAAGTTTGTCTTAAATGAGCAGAGGGCATTGTGTTGACCTTTCTAGTTTCCAAAGTGTCTTGATGACCTTCTTAGTTTCATTGCTTCTTCttcaaaaagaagaagttaaaaggGTTCTTGGCCAAAGCAGTCATCAGAAATTCAAGTCTGCAAAGAGGCCAGGGAAATCCCTGCCTGGAAACTC----CCCCAGAGGGCTCCCACTACTTGATGGTGAACCTGTGTGATACAATCAAGGTTGACAACCCTTGACCACACAGAGCTGTGGTCCTGtgaatggagagagaagaaaattgcTAATCCAGCTCCCTGGAAACTCTGGTTAGGCCAAGTGAGGAGAAGGCGTTAGATGTTAACCCTAGGACCAAGAATCTTTTAAAGGCTGAGATCAGACAGACATTTAAACCCTATGAATCTTAGATAGAAAGAGTTGAGGTTACTGTTAACCTTCA-AGCTGGGCTTGCTTTAATAACCACCCCGGCAGATGGCAACAGGTCTGCCTGAGCATTTGTAGGGATTGGAAACTTACCCTTTTTGATAT--------------------------TGGAGAGAATCAGTGACCACAACCTCCTCTTTGTATCAAATCCAAATCTACTTCCTCTGTGC--TCCAGAAGGACAAGGACTGTGAGAACCCAGAAGGTTCTGATAGGAAGTAGTTCCAGAAGGCAGCAGTAATTATGATCAAGGAGTCACTGGAAGACTTGGTATCAAGAGAACCATGGAATATCTGTCTTGGCACAGATTCAGGATGCCCCAGACCTGGAAGATCTAAGCCCATTAGGGTTCGGAAGATTCCTGGGTAAGATACCACCCAGAGTGCTACCAGGCCCTTTGAGATAAACATCCAAAGA-CTGTGTAACATAAATGACTGAGCTCTGGAGGTAACTAGATCCCCCACCCTTTTACATTGTCTCTCATCAACCCACCCCTACTGACACCTCTATTAGCTACATACTGCA-CTCCATCACCAGCTTATTTATCTTCTACTGTTATCCTGATGGACTGTAAGTGACCCTTGCCCTCCATATCACCATTGTTTTATTGCATGAGTCCTTCACAAGAGTGCAAGGATTGCTATAG---ATTGCATTA-ACATCT---GTGTGGGCAGCATGAC----------TTGAGTTACTTGAATGAAATAAACCATTAAATGATTACAGAGGATGGGGAAGTCTGTAAGCGTGTAGGTTTCCTGCAGGATATGAGCATTTCACTGGCCTTCCTTCCAATGAATGGAGGAAATAAGGACTGAAGAGCAGGCAGCAGGGTTAGTGACAATGACAGGAAAGTGTGTTGGAA---------------------------------CTGGGTCTTCTAGGGAAGCTCTCTTGCTC-CTGGTGCCTGGTCCCAC---------------------------------------------------------------CCCTTGCTCCCCAGTATC------------------------------------------AGGGATTTTTGTTCTGGGCTACAGCTGTAAGCAGTGTGTAGCACACAGATAG------------GCTTAGTGGGTGTGGACTTGCCCATCACTGCCTCATCATGGTCTGCTAGTTCTCCTGGGACAGAGCAAGAAGCACCCACATGGGTGTGGCCACATGCACCGAAGAATAAAGACTTAAAAACTGAGTAGCATTGGGCACTG---TTAGGTACGAGGTTTGTGCACTTCATGGCATAAAGT-GAGGAGGAGGTACGCAAATTTGAGACAGGGCGTGTGGCTCTTAAAAGGTTACTATCTGGATAGGGTGGGACCAAGGGAGTGCCAGATCTGTTCTACTCTGAGAAGTTGCAAAAGAGACAGAACCAGTAGGAGTATGTAAATTATGGGAGGAAGTTGATATGGAGAGTAGGAAAGAGAAAGTATTCCAGGCAGAAAGTGAAAGTTGGAGGACTCAGATATGGGCACCATATTCGTGGTGGTGTG-----AGAGTGGTGTGTGTA

a score=160787
s chr3           105477397 6948 + 160039680 [encoded data, 7689 characters]
s HiC_scaffold_1 116078733 7122 - 233722169 [encoded data, 7689 characters]

a score=87264
s chr3           105485390 7008 + 160039680 [encoded data, 8220 characters]
s HiC_scaffold_1 116086681 7429 - 233722169 [encoded data, 8220 characters]

a score=48496
s chr3           105492408 2282 + 160039680 TCTCCCCATAGGCGTGCACAGAGTGGGTCTCTGGGTGGGCTGTTGTGAGTCTGAACTTAGTACCCCAATTA------ACTTCCTTCTTTCCACTAATGCCAATGGAGAACTT-CTGCACG-ACTACACTGTTCCAGCCCTG-GGACCCAATCCAGGTATCCTAGGTCCATAATGTTGAGTAGCAGAATCTAGAATATTGAGGGGTAACAGCCAGACCTACTGATGC----------TGGCCGGCAGCCGGCTGCTAACTGCACTGCCAGTCCACCCCAGCTTCCTATAGTGACAATGGCTGAAGTATTCATATTTGTTTTCCCTTCCCTCCCCTCCCCGTATAATCGTCTCCAGGAAACATATTCACATGTTTGAGAAGGaacatttactgggctgcctgcatatgccagacaccatgggggatgcataaagagcaatgagCCCACATCGTGGCAGCAGGGGGCTGTGGGACACTGTGACCTGATCCTCTATCAGCAGACCTACTCGTAGACAGCCGCGTACACATACCCACAATCTGGTCAGAAGCCTAGGCCTAGAAGGGGTTGCTGAGGCTTGGTCTGGGCCCAGGACAGCATCAACTGGCATTGTCTTCCCACAGCCCGTGATGCTCCATTGAAGATTA-------TCTGGGT-CCCTGGAAAAGGTCTCTTCAGGGGCTATACTAAGCTGTTTTCCCACTGTAGCAA---AGAGGACGGTTTGGCTCTTTGCTTGTGCTTCACCCTTTTGCTAACTCAGAGTGGAATAGCAACAGCAGAGCAGGTCTGTAAGCTGAGCATTGCACATCC-------CTGGCTACTGAATG----------------------CACTTCTCCTCTGGAGGCTCCCAGTCTTGCTCTTCTGCCTTCAG--GTAGACTGCTAGGAGTGGCCCAGGCATCCAGCCTCCTCCCTCCTCCCCTGTGATCT----CCCGACCACGGGCC-----CCTGCTTGGATTTTTAAATGTAGCTTC-CCCTCCTCTTTTGTATTTACATAATAATAAGTCTAATAAATAGTTGTCTGGAAGATGGATGAGG-TGCTGTCTCTCTGTTTTCCTGTCAGATTGAGTCCTTTATGAAACTCTCCCAAGTAGAGGCTTTGTGGCAGCTGAAGAAAGGTGAGCACTGTGAGGCCCGACTGCACGGAGCGTGGCGTGATTGCAGAGAGCACACACCTT---------GCTTCTGGATTTGGGTGCTGGCCACATCATTCTtgag------------------cctcggtctgtcccactgttaagtgggctgaatgatgcctgcctgctgctagcttctagagatggagaagcacgcaggaagatgctttgtcaactaagtgcAGCGGAGACATCTGGAATACCCTTGCTTTCCTCAGAGTTTTCCTTCCAAGCTTTGCCCTGTGTGGGTAACACACAGACAGCATAAGCAGACAACAAGCCACACACACTATAAATGCTCTCCAGGGAGAAACAGAAATGGCCACCCCCGCTCTTCCACAAACACTAGGAGACTCAAGTTCTAGTCTCGGCTTGGCTCC--------------------------TTGCTTGCCCACTGTGGGCCTAAGTACCTTTCCTATAAAATGAGAACATTCCACAAGCCACTGCCTA----------------AATGACCTCCATTCTGATGGGTAGGAGAGAGGGCACCA-GCTCTGTGTT------GGT------GTCAAAGCTGTGGCCAGTTCAGGCTGTGCAGGGTGCTCACAGTGGAC--AGAGCGAGGTGGAAACAAGC-------------CCTCTATTCTGT----AGCTTGGTTTGCTT---------GCCAGGATCCCCTGGCTACCTCTGAGCTCACACTAAGGC----TCATTTAGGGACTTTTCT------------------CCCTTTAGCCAACCTGAAATGCCCCTTTCCTGACCAAATACTCAAGTCCACACCTCCGC------------TGCCTCTGCTTCC-------------------------CTGCC---------------------CACATGGTCATGCGTTCTGGCACCAATTCTTC-----AGTCAGATGCAAGGCCG---GTGATTAAGAACTTT---TGCCTCCATGATTCCAGACAGAGGGCAGGGAAGTCTAACTTCTTTTTCTTCCTACCAATCCCTGACCAAGCCATTTAATCAGAGCCAGCACCTCATTTCCCATGTAGAAAGTGACTGGAAAT----CTATTCCTTCCTGATTTAAGATAGACCCTC----CCCTCCTCTTTTCTACTTC------ACATGTATCACCTTGCATCTTAGTTTGGGCTTCCCTGAAAAGAGAACAAAGAC--AAGCGTGGGTGGTTCCAGGCAGCAGGATTGAAAATGGTGGGAATAAAGATGGTGGGCATGGTGGTTTGGTGAGCTGATCATCTTGTTGGGTGGAGGGGATCAATCCCATGGGCATCTCTGAGAAACT---GTCACATGGTTCAAAGTTGCCACCTA--TGTCAAAGGACCTGGAGC
s HiC_scaffold_1 116094512 2433 - 233722169 TCTCTCTCCAGGGGTGCCCAAGGTGTGTTGCTGAGTGAGCTTCAGTGAGTCAGGACTTAGCCTCCCACTTGCCCTCTACTTGGTTCCTCTCACCAATTCCAGTGGAGGACCCACTGCATGTGGGGCACAATCCTGGCactgaggacccagccctgttaCCGTGGGCCCAT--TGCTGAGGGACAGA--CAAGTGTGTAGACAATTGACAGTACAGCCTGTCAGTGCCAAAGTTGGGTGGGCCACAGCCGACTGCTGAATCCATTGCTGGTTCACCCTGGCCTCCTGTAATGGTACTGGCTGACGTGCCtgtatttgttttctcttcctttccctcttagCATAATCATGTC-AGGGAATGCATTCACATGTTCAAGAAGGaacattttctgtgttctttg----tgGCAGGCACTGTAGGGGATGCCCAAAGACCAGTGAGCCCACATGGTGGCAACAAAGTGCTGTGGGGCAC-GTGAACAGATCCATTA----CAG-----------GGCAGCTGGATGTGTTTCC-----------TCAGAAGTT----------AGGGGT------------------GCCCAGGAGATCAGGGTGGGGTGAGTTCTACCTGCAA-----AAGGATCTGTAGGAGAACAGACAGAGTCTGGGCACCTTGTGAAAAGTATTCTCAGGG-CCCTACTAAGCTACTTTCCCACTGGTACAATCAAGAGCACCATTTGGCT----AATTGTGTCCTAACCTTTCATTAACTGGGAGTGAAGTGACAATGCCAG-----GTCTAGAAGCAGTGCAGTTGGCAGCTAGCGTGGCTGGCT-CTGAATGGGGTTTTGTGGCTTGTCCCTAGCCCTAGTCTTCTCCAGGCTCCTA--CTCAGCCGTCTCCCTCCAGAGGGGGACCTCCAC-AGGGACACAGGACCCAAGCCTCCCTCTACTACCCCTGCTATCTACACTCCCTCCCCAGGCAGCCCACTTGATTGgatttttaa-tgtagtttttccctcttcttttgtatttacatAATAATAAGTCTAATAAATAGTTGTCGAGAAGATGGATGAGGGCCCTGTCTTTCTGATTTCCTGACAGATTTAGTTCTTTATGAAATTCACTAAAGCAGAGGCTTTTCTGCAGCTAATGAAAGGTAATCACTGTGAGGCCCGGCTGGGTTTAGTTTGGAGTAATTGGAATGAGCATGAAACTTGGAATCACAGTTTCTGGATTTGGGTTCTGGCCGTGCCTCTCTTGGGCTGGGTGCACTTCCTGCACCTCAGTTTCTTCCCCTGTACAGTGTGAGGAATAATTGCTACC--CTGTCTGCCTC-------ACAAAAGCTCGTGAGAAAGTGCTGCATAAGCCCA-------TAATGCATTCTCTGCATGCATGCTCCCACCACCATCCTCTTCCTAGGTTTCTGCCTGTTCAGTGGATGCACAAGAGGTACAAGCTAGCGACATGCCATGTAAA--AATAACCCCCTCCTGGGAAAAGGAATGAAGGCCATATCAGCCCTG-GACAAGCATCAGGAGACCTCAGATCTAGTCTGAACTCTGCTTCTGTCTTACCATGTGACTTTGAACAAGTCACTTGCCCTCAGTGGGCCAAAGCATTGTCCCCTTAAAAGGAGAGTATTCTGTGAGCTGGTGTCTAGCTTTCCTCCAGCTGGAACCACCTCCAGTCCCACGGGCAGGGGAAGGTGAACTATGTTCTGTGTCTGAGGAGGTGCATGAGCCATATCTGTGGAC---TAAGGCTGGCCATA--TCTCACCACAGACAAAGAGCTGAGAGAAAACAGGTAGGGGACAGAGTACTTCTACTCTGTCTTCAGCCTGTTATTATCTGGGGTTCAGCCAGGGTCCTCTGGCTTCATCTGACCCCACACTAAAGCATAACCTTCTCACCACTTTCTTCCCCAGTAGACTGGCCTCCCCTCCAGCTAGCCTGAAATG---------TGACC---TCCTCAGGTCCTGCTCTCCTCTCTACCCCTGGGTGCCCTTTCTTCCTGCAATCCATTCTCCTTGCTTGCAGCTGCCTCCTCCAAAAGTCTTCTGCAGCATGTGCTTTTGAGTTCTAGAGTTGGTTCTTCAGCTGAGTAAGAAGCAAGGACGACAGTGCTTAAAAGCATTCTCTGCTTC--TAAGTcagaaataaaagcagagaaGT---ACCTGTTCTGTCACCCACTAG---CTGACC-------TTGA-CAGAGCCAGTGCCTCA-CTCccatctggaaaataa----aaatgctgtAGTTCTTTCCTGATTTAGAATGGAATCTCTACTCcctttcctgttttatttcctcCAAACGTGGACCACTCTGTGTTTTACTTTGGGTTCCCctgaaaacaaagccaaaaccAAGATGCGACTCATTGCAGACAGCAGATATGAGACAG--AAGAGCAGACGGGGAAGCAGTGGGGCCTTAGTTAACGGGTTATCCTGAGGAGGATGAGGGACTCAGCATCTAGGATTCCCTGTGAAAACAGAGCTGCGTGCCTCAGAAACACCACTCAACAAATACAGAGCCTGGAGC

a score=38960
s chr3           105494704 1266 + 160039680 GCAGATTCAAAGGAAAAATGCATACCAAATTCTTAG------------TACGGACTAAGCATGGAAAGGTCCTGAAAAACATG--GTTTCCATTATCCAATTATGTGGATGCGTCTCT-GCCCGCCTGGGTCCAGGTGGCCAAAGGGCCGAGGCATTTT-TCTTACACCCCAGATCTCCAGAGCGGGATAAGC---------------------AGAGCCACCAGCCCCC------GCGAAGTGATCTGATAACTATTGTCAGCGGGTTGAGGCTCTGGTGTGGAGGGCTTTCCATCCATATCACCCCTGATAGGCCGAGTGATGAGGCCTCTAGGGCCTCACCCTGGGGAACATTTGTCCTTGCTAATTGTGTGTCAGAGGA---------------------CCAGATTCAGC--------------------------------GTCACAGGTGGGGAGGCAGGGTGCTTAGAGGTTGCCTTCCAGGAGTCAGGGCTGTTGGGG-----TCCCCGGG----TCACCTCCCCAGGGCCCACGGCTGCTAGAGCGGGCTTGCCCCTGGCTGCCTGTCAtctgctggggattacggtgccatttgttctaattcttgttgacatttcatttcacacactattaaatgaacctctccaga-agggatgaaagagaagtttgctttggcgagagAGGAAAAGTAATGTGTACTCTGGGGTAAAACAAGGCCCTGATTTATTGCTGTGATAAAAACCCCAGTAGATGCGGTGTCAGCCTCCAGACCCCAAGCCTCTGGGCTGGGGATTTGAGCCTGGGCTCTTCCTGGCTATGTTTTACCTGAAGACCTGCTTAGCTTTACAG-GGAAGAGGAAGACGCTAGACAAGACTGCAGCCTAGACTCAGGACCCTATAGGCAGGAGACTCC------CCCTAGGCATCC--------TGT-----------------GAGCTCGAGCAGACTCCCAGCGAAGCCACTGACTATCCAGGGGGGAGCCAGTGAACAGAAGCAGAAAA---------TGTTGGGTTTTATGTGAAAGGCCGGACAGTATCTCTGGCCAGGGTCTTGCTCTGCTTCAG---CTAACCGTGAAGATGCTACAGAGTCTGGTCAG---AGCAGAACACCTGCCTGCCTCCTGCTCTCCTGCCTCTTCCTGTCCCTCAGGATTCCTCACTTGTTTTTGGAAGGTCtttgtagagtacccaccgtgtgtctggttctgggaacctggagctcagaatagcagtgatcaaggctatttcgacccctgctctTGAGGGCCTTGTTTG-CAGAAGGGGGCCTGAAGCTGGAATCACCATTTTATAACGGAAATTCCATGGTGC----------CAGGGTGCTGATGTGGGGTAGGGTCATGGGGGG-AAAGTATGCAAA
s HiC_scaffold_1 116097436 1383 - 233722169 GCAGATTAAAAGGGAAAATGCACATACAGTTCTTAGCATTAGATCTGGTACACTCTAAGCATCTAAAGAGC-------ACTTGCTGTTTCTTTGATCAAATTACGTTGATATGACTCAAGCCCCCTGGGGTCTAGGTGGGCTAGGAGTAGGGGTGTTTTCTCTCACACCCCCAATTCACAGAGCAGGCCAAGCTGGCAGATTGCAGAGCCTGTGAGAAACAGCAGCCCCGTGTGAGGCAAGGTGATTTGATGATTATTGGCAGCAGATCAAGGTTCTGCATTTGCCAACCCACCATCTGCCTCGCTCCTGAGGGGCTGACTGATGGGGCCTCTTGGGTCCCACCCTGGGGAACACTTGTCCTTGCTAATCGTGTGTCAGAGGAAAGCTGTTTCCTATGTCAAACACAGTTTCTGCTCCTCTGTCAGAAACTCAGAGACCATATTCCAGCCACAAGCAGAGGGATAAGCTGCCTAAAG---GCCTCCCCAGAACCAGGGTTATAGGGGTCTGTTCCCCTCGCCCTTCAGCTCCCTGGGGCCCAGGGCAGTAGGAACAGGCCTGCCTCTGGCTGCCTGTCATCTGCTAGAGATTACAGTGCCATTTGTTCTAATTCTTGTTGACATTTCATTTAACACACTATGAAATGAACCTTTCCAGATAGGGGTGGGAGAGAAGTTTGCTTTGGCAAGAAGCAAAAAGTAATGTATGTTCTGGGGTAAAACAAGGCCTTGATTTATTGCTGTGATAAAAACTGGAGTAGATGTGgagccagggcccag--ccctggGGACTGTGCCAGAGATCTGGGCATGGCCTCTCCCAGTTTATAC----CCCGAGGACCT-CTCTGCCCCACTGTGTACAAGGGAGGCTGGGGGCAAGACTGGAACTTCAAAG-GGGGTCCCACAGACAGCAGGCACCAGGCCTCCTTGCACACCCAAACTTGGTGTTACCTGCTCTCTCTCAGGAGCTCGGAGCAACACATAACTAGCCTGTCAGCTATCTTGGACTGAGTCAGtgagaagaagcagagaaaaagtcAGGTGTCAGGTTTCATGCACGAAGTTTGGCAGCAGCTCT--TCAGAG----ACTCTGCTCTAGTTTTTAACTCTGAAGGTT---CAGAGGCCG--CAGCTTGGCAGAATGGACATGGGACACACTCACTCTTGCCTC--CCTGT-----------------TTGCCTCTGGAAAGTTGttactgagcacctactttgTGCCAGGTGCTGAGAACCCGGAGCCCAGAACAGCAGTAAACAAGTTAAACACAGTTCCTGCCCTCTGGGGACTTGCACACCAAAATGAGATGTGAGGCAGTGGTTACCACTGAAGTTCAGTACCTTGGCTGTACATTGGAGATGCAGGGTGTCTATGTGAGATGGAGCAAGGGGAGATAAAATATGCCAA

a score=106789
s chr3           105495988 6695 + 160039680 [encoded data, 8001 characters]
s HiC_scaffold_1 116100378 7198 - 233722169 [encoded data, 8001 characters]

a score=62881
s chr3           105503839 3778 + 160039680 TGCTGACTTGAAAGATTG-----TGGGGATCACAAACCAAAgattttagcctagtagtacttgttccagacctcttatctacagagctgtaggctaatgcatgggtgaggtttaaaacactaagtgtgcagtcttctggaacagcagtcatatgaaacCCCCATAATTCCTGAACAAGGTTGTTTGGAACACAAGGGTTCCTGCCACAAGAGTGAAGCTGCCACTGAGAGATCCCATTCCCAT-------GGAAGGGTTGTCCCACGGGACAGGAAGAGTAACTGCACTTGGCCCTAACC----ATTGAGCTCTAAAATAACAATACCCC----AACAagcacttag-----tctgtgtgtgaaccactgcccaa---------gctctagtttagtattaacttagacaacatatcaca-------------aggactgtgtgaagtggtgactgtgggtctctgttttacagg-gaggaaagagagactcagaaaaattaaatgacttgggtcaaagccacg-gtcctatgcatagtgttactaggatctgaagccactcccagaagccgtt-ctttctggtgctacactAGAGAGATAGTGGGCTATCATTTCTGCGTGACCC-TTCTTC-------------CCCCCTACCTCCCAGAGATTCCCAGGCTCTTAGGTTGCCAGTTTGTCCTTCCTG--------GATTCTTTCCATACACAGAGCACAGCTTGTTCTTGTTTCTGTCCCTCTTTCTTATCT---------GCAGCTAGGACAGCAGAAGTCCTTTTTTCAGATTTGT---GTTTAACTTTA----GTGTGCTCAGGAGG----------------CAGTGTGCATGGCTCTGATCCAGTCACCACACAGGCAAGGAAAGGCTGGAGAAATAGTCCCAGCATGCTAGTACATTGCTTCAAAACAGCAGCTAGCATgccaggcgtggtagtggcacacgcctttaatcccagaaattgggaggtagaggcaggtg-gatgtgtgtgagttcaagac----cagtctggctgacatattgagtttcaggctagccagagctgcag-----agtgagtgataccttgt------atcaaaaacaaacaaaaaacaaaaaacaaacaaaagcaaaaacaaacca-----aaaaAGAACAGGGACTTATAGTAACAGGACCCTTCCACC------CACAGCTGCCTGGGCGAATGCACGGCTGTAGTGTCTTCCT---------------------TATCTTTATATCAAGGGAGGGATTAGAATTTATGTAACACTGGAGGAGAAACTTGGGGCTCAAAACTGCTTTTAAGTCATGTCTTCGaagctgagcatgataatcatgcctaaaattccag----cacttgagaggtggaggcaggaagatttgagagttcgagattctcctcagctacatagctagttagagacaagcctggattacatgagactgtctcaaaaaagaaagttatgcgtgtcacctcagcagagtgaagcctgaccctattttctgTGATAAGGGTCT-AGCTGTAGTTTACTGAGAAGAGGGACAGGAATAGAGCATAGTGTGATGGAAGCCCCTGGCTAGGCCTAAGCAGGGGCTGGTTCTTACTTCATTGGCTTGAGACGGTG-TCAGACACCAGGCCTTATCTAGC---CCCAGTGAGTAAACG-TGCCTCA---------GCCCT----------ACAGGAGTGGCAGTGTGGGTCCCTGCCAGATGAGAGCCCCTTTGCCTCTGAAGCATCTAGAGCAGCGACCTGGGA-GGCCGAGAGCCGATGGGACCCTCCCTCGGGGTATCCTCCGGCCCAGGATTCACCAAGTGCTCACACTCTCCCTCAGGAGGCTTTC-TGGTTGTTGTCCTCTCTGTTGTCAGGTTACTTGGCTACAAGTACAAAGCCTGGGCCCAACACAACTCAC-TGCTTTAAACAAAGAGCCCCAT-CAGTGAATTGCATTAAATCACC-CGCTTTGTCC-GCATTCCGACAGCCTTTCTAAATCTGCCTACCTAATTAGCTTCTTCTCAGAACCCAAAATATGATTAAATCTGTATTAAAAATATCTGTTCGGTGTAGGATCAGACACACCTGAGCATTTTCTAAATTTAGCAGAAGGACAATAGGCTCCGGGTGACTTTAATTGGGTGCGTGATTGCTGCGGGAGAACATTTTAATTTGGATTTCCAACGTGTTTCTCGGTCTCTTGCCTTTAAATTGCGTAGCAGAGGAAGGGGGAGCGAGCGGCTGGCCGTTCATAACCATCTTCCCTC-----------AGAGCTGAATGAACAAAGCACTGTGGCCATCCGGTTGGAGGAGGGGACAGGCTGCTGATGTGTTCTCTCCCCTCAGCTCCT-GACTCCTGAGTTCTGCTTTGACAGGTACCTAGGGCAAGGCTGGGCAGAACAGGGGAAGCAGTTAAAGGACTCTTACAAGGTCTCTCCTGTCACTAGCTTTCCT-TGTGAGCCCCCAGTAGG--TCTCTGGTTT-TAGTGCT-TGGAAGGAAGCT-TTGCCCAGAAGTGGGTGGGTGTGGCTGTTGAAGCAGGCACGGATCGAAGGGAT--CTGGAACTTCATCTCCTTCG------CTCTGGTAGTTGCCTTGTTGAAATATCTTTCAACAGTGTCATTCTGGA--GCCACTAACAATAATGACATCCCTACCGATCACTACAGGAGGCACAGAGTGGGTTTCTGACAAAGGGTTTGGATAACTTCTGTGGTTGTACCTGTCACCTTGC-ATCAGGAGGACAAAAGACAGCATGAGTCGCAGGTGGGAA---CCTTGGTGGGCTCAGTCTGTAG-----TAGGATGCCTCGAGCTGATTTCTTTGTGGT-TAAGGAGCCAACGAAGAGCAG------AGCCTGACTACCCAAGGACCAAAGGTGGGACAAGACAGGGTGGGCAAGTCTGGGCACTGGGGGCTGTCGTGAGGATACATGGTTTCCCCTCCGGGAGCTCAGCATCCTACTGGAATTATTACACCAGGTGCTTGCAACTGATTTTCAATTTGCAAAGCAAAACAAATTTGCATTAATCAGAAAAATCCACAGGAAAGACTGTTTAGATCGTAATGCAGCTGCCAGAGCCATTTGGATTCCAAGTTTGCAGGAGGCTCTATTAACCCTGCTGCCATCGCAGGCTTGTTCCCACTCCCTTCAAACAGTCACATCAGAGGAGCACAGATGTCCTCCCTGGTCCCAGGCTATGTGGCTTTTTCCTCCAGAATTCC--------------------------TCCAGGATTGTGCCAC--TATTGTAACACCACTCCAAGGAAGGGCTGTGGAGGTGGTGATGTGAGGGTTAGGCAGAGCTGTCCTAACATCTTGGGTCCAGGCCACCTACTTGTGAGCTAAGCTCGGGCTCCTCTTCTGGGAACTCAAGTCCTCCAGCAGCTTTTCCTTTGAGGCTGGTCCCTGACTGCACATCGGTTGTTTCTGGCAGGTGAAAACTCATCTTCGCCTCAGCTTATGCAGATGTAATGAGGCGGGGATGATGGATCCAAGCCCACTGCAGCCCAGTCCTGTGCTTTGGCCAAAGTTCATAACAG-TGCTTTCTATTAGAAAGGAGAAGCAGCCTGGGCTGCACTCTGTGCTCTTCTAGC-TAATTGAGGAAGTCCTTTGAGGGGGCTCCTTGTAGACATATTTGTGAGGGGAGGCTCTACATCTAGTTGAGGCTTCAAGAGTCTGGGCTTCACAGGGAGGAGATGAGCCTTGTTTGAAGGACT-GTCTCCTTCTAATGTGCAGTGGCCACTCCCTCTATGCCATGCCCCTACAcatcaggtatttgttggtctcctacatggcaggtagtattctaatcatttgataatagagtagtgagcaaagcagactcaactccctacccttatggaacccacatgatagtgaaggttgatagtccagagatatacagaaaagaaaaatgtCAGAGGGCAGTA
s HiC_scaffold_1 116107959 3532 - 233722169 tgccggcttgcaaggcagaagACGGAGGCCCACAAGCCaaggattgtagctcagtgagacTTGTCCCAAACCT-TTATctccagaactataagaaaaCATGTTTGTGTTGTTTAAATCACTAACTTTGTGGTAATTTGTAACTGAAATAGTAGAAAATTCATACAGCCTACAAGTGGGAACATTCAGAGCTCAGGGGTTTCTGCCATGAAAGTGAGCCTGCCACCAGAAAGTC--ATTCCCAATGCTTGAGGAAGGCTCtaggaaaagaatgaaatgaataaatataccTCCCCTTAACTTAGAATCAAGCCATAAAATAAGGATAACCCTGATGGCAAGTACTTATACACCGCCATGTACAGAGGGCCCCCTTATTTTATcctgttttagtttatt-ttattttata-aatttattttattttatcctccTCATAATCGTGGGAACTAGTGACTATCTGATGCCATATTGTAGACAAGGAAACTGAAGGCCAGAAAGGTTGAGTGACTTGT-TCAAAGTCACACAACCTGTAAACGGAATAGTTTGGGTTTGAAGCCAGGCTCAAGAATGTTTGCTTTCAACCACTTCAGTAGAAAAATAATGGCCTTTGTTTTCTTCGAGATCAATTCCTTGGGAATAAGAACATCCACTGTCAGGAGGAAATTCAAAAGCACT--------------ATTTTTCTTGAAGAGAAGGAGTCCCTTCACA-----------------------TCCTGCTGATTTCACTTATTTATGAGGAGAGGGGTGAAGGCTGTATGAAACATTTACTAAGGCTAGAAGAGTACAATACCAAAAGGTGTTCTCAGAGAAACATCCCAGGCTCCCTCggtttccatttctcctttcttcccacCTCTTTCCCACTCACTCCCTGTAGATA----ACCAGTCTCTTAGT-------TTC----------------------------TAGCTGCTCCTTCTTGTATTCCTTTTACTCAGATGAGTAAGACACCTGTGTTGTGAG-GGGTGGCATACTATACAGTCTCTGTTGCTCTTTGTGTTTTAACTTAGTGGAAAGTTCAGGAGACAGTGTGCTAAGCTCAGCTTCATCATCCAGATGGGGCAGGAGGCTGGAGA--AACAGCCCTCAACACACACTTTGGTTCAGGACAACATGAACTCACAGTATCCCAACATGTCAACCTCAGAGCTGAGCTGCCCGGGTGTGTGC----TTGCTGTGCTTTCCTGATGTCTCCGGCAGTCCTTACCATCCTTGTCGGAAGAGAGGAACCAGAATACCCACATTGGTGAAGGAGAAACT--AGGCTCAGAGGAGTCTGTAAGTCATTTATTCAATT----ACGTGATT----CGGCTATAGTTTGTGTGGCCACTTG---GGTGCAGTCAATGGCACTTTATACC-----ATTCCATTTA--------------TGGAAATGGGCTTA-----------------TTGGGAAGGAA----------------------------------------------GTGGCAGGGATCCCAGCCAGAATTGA-GGACAAGGTGGGCAGGA--------------GCCAGAAACCTTTGTCTGGGACTAGATGGGGCTGGTTTCTTGATTCAGTGG-TGCAGTCGTTGATCATTTATCCAAC--TAGCTAGCATTCCCTGAGGGCAGCTGGTGCCTCACTGTAGACAGCCTTTGCTGAGTGAGCAGGAGCTCCAGTTTCATGTCATGGTGAACAGAGGGCCCTCTGCTGCTGGGGTG-CTTGTACGGCAGTCTGTGACAGCAGGGAATAGGTGagaccctcttttgaagtccctCTAGTTCTAGGATTCAC----TGCTGATGGC--------GAAGGCTTTCCTATTTGTTGTCAGTTCTGTTTTCAAGGCACTTTGC-GTGAATATAAAGCCCTG-CCTAACCCAacttaaatgctttaaa----aagctCCAAACAGTGAATCACATCAAATCACCTCGCTCTGTTCTGCATTCCAGCAGCCTTTCTAAATCTGCCTACCTAATTAGCTGCTTCTCCTAACCCAAAATATGATTAAATCTGTATTAAAAATATCTGTGCAGGGTAGGGTCAGACACACCTgagtattttctaaatttagcCAAAGGACAATAGGCTCTGGGTTACTTTAATTGGGTGCGAGATTGCTGCCGGAATacattttaatttggatttccaTAGTGTTTCTCTATCTCCTGTCTTTAAATTGCGTAGCAGAGTAAGGGGGAGCGTGCTG-GGGCCGTTCATAACTGCCGTCCCTCCAAATTATCTCAGAGCTGAATGAACAATGC---GTGTCT-----GCTGGGGGAAGGGACAGCTGGCCAAGGTGTTATTACTGCTTAGCTCAGAGGCTCCTCAACT-GGCTTTGACAGGTA-----GGGAGGCACAGGCAGGAT-GAGGAAGGAGTTATGGTATTCCTGCAAGGCCTC--CTGTCACCATCCTTCCTCTGGAAGCCCCCAGCAgtattctctgcttcctggtgctATGGGAGGAGACTGTTGTTctaagggaagaggaagagac-------acag-CACTGAGAAAAGGAGTGTTTCAACCATGATCTCTTTCAACCAGACTCTCTCCATTCCCTTGCTGAAG----------CAGTGGCGCTGTATATTGCCACTGATGATAATGACATCCC---------CCATGAGAAAC-CAAGGTGGGCTTCTTACTGAGGACTCAAATGACTTCCCTGATTGTATCCATCACTGTCCTCTGAGGTGGAGAAAAGA--GCCTGGGAGGCCGAAGTGAAACTCCTTGCTTCAGTCAGTCCAGGGCTCCATGGGA------GAGCAATGTACAGAGAGGTAGAAGGATCCAATGAGAACTCATATGTTGGCCTGGCCGCCCATAGAGCAGCGGTGACAT------GGGTAGGCAAAGTTGGGGGCCTGTGGGTGG-GTGAGGGTATCTGGCTTCTCCTCAGGGTTCTCAGCTCCCTGCTGGGATTATTACACCAGGTGCTTGCAACTGATTTTCAatttgcaaagcaaaacaaatttgcATTAATCAGAAAAACCCACAGGAAAGACTGTTTAGATTTTAATGCAGCTGCCAGAGCATTTTGGATTCCAAGTTTGCAGGAGGCGCTATTAACCCTGATGCCATCACAGGCTTGTTACTACTCCCTCGAAACAGTCACATCTGCAAGGCAGAGATTTCATTCCTGGCCTCAGGCTGCATGGCCTTTTCTTCCTGAATCCTGGAAGGCAGATGTGGAAGGTGGGGTACCGGGAATTGTACCATCACACAATGGCATTACTCCTAGAAAGGGCTGTGTA-----TGGAGTGAG---TATGTGGGGCTGCTCTG------TGGG---------------------------------------TCTGGGAGCTTA---------------------------------------------------------------CTAAAAC---------------------CACATGGGAGGGAGCTCTGGTGCTGGTTGCCAACC----------------------TTGGATGACTTTCATTACTGCTTCTCTCCACTGAGTAGAACAGCAGGTCCAAACTGCATCCTGTGCTCCTCATGCACAGTAGAGGAAGG-GTTTGAAGCTGATCCTCCTAGAC----TTAGAACCAAAGGACCCCCA-CCAGCTGAGGCTCTGAGAGGCTGAACTCCATGGGGAATAGCTGAACC-TGTTCCAGGTCCTCTTCGCCTTCTAATGCACA--------------------------------------------------------ATGGAATGCACTGTCTTAATCACTCACTGGCAT-GCAGTGAGCACAGTAGAATAAAATCCTTACCCTCAGGGAGTGTATATCCTACTGCAGGTGGATAACTCAGACACACA---AGAAGGAAAATGACAGGGGTGGGTA

a score=37200
s chr3           105508330 3794 + 160039680 [encoded data, 4766 characters]
s HiC_scaffold_1 116111457 4452 - 233722169 [encoded data, 4766 characters]

a score=43974
s chr3           105513479 4820 + 160039680 [encoded data, 5463 characters]
s HiC_scaffold_1 116117205 4615 - 233722169 [encoded data, 5463 characters]

a score=37400
s chr3           105519813 2025 + 160039680 AATTTCAAAATAATTTACAAAGTTAAAGGTGT-GCCCAAAGAGACCC-GGCTG-AGCTA-CAATCCTCCAGCGTTCTTTTCAGCCTCCTCCTTCTGGTC-----------TGCACTAGATGCCGCCCATGGCTCCAGT-TTCCTTGCCTTCT-TTGACTCTGGCTTAGGGAGTTCTGAGCACCAAGGGAGACTTTGTCCTGAAC-GTTTTCATGTCTTCTTCCAGTCCTAGGTATTCCGCTCATCCCTCTGTC---ATCTGCCTCCTCAGCCTACTCTGTTCCCTGGATGGTCTCCTTGCTACACCCTCCTCACC--------AGCTGAATTTAGCCGATGG-------------------------TAGCAAGCCAAAAAAAAAGGGGCTAGGTCCGTGCGTC-CTGCTGCCCCTTGCCTCTGGGAATTGCTATGCTGAAT--------GGCAGGCCACTCCTCCCTCTtctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccc---------tctccctctccctctccctctccctctcccAAAGGTCTAGGAGTGGTCACTACTTTGAT------GATGCTACCCCTAAATGC------CTCCACCCCTCATTCTGGT-----------CCTTCCATCCAATCTTCAACTGTA--------TAAATC------GTTCTCCCAGCACAGTTCTGGGTACCACCTGGTGGAGGGTGCTATGACTGGGTAGAGGGAGGCCAGGGCCCTTATGCCACGGG-GCGATAGAAACAAAGTGTACTCAC--------ACCTCTCAGCTATGAACTGTCTCACTTCCATGGCGACT--GTGCTGCTTCCCTCAGTTGGTTTGCAGAGTTC------GTGGTAAGAA--TAACAGAATATGTTTGTAGA-------------GATAAGAATGTCTCCTTTGTGGGCTCATTACAGAGGTTGAATGATAAACAGTCAAGACAACTGGTAAGAATCACTTAGCAAAGTGGCT--------------GGCATGTT---------------TAATCATCCCTCTTCGGGTCAGGAACCCATGTGCCCC-----TGGAATGCCTGTG----TGTGCCATCCCATGTGGAGCTGGTAACACAGTCAGCTTCCTACC-----ACATCAGGAGATAAAGTTGCAATGGTCTAGTCCTGAAGGGCATTTATCTAGGCGCCCTTCCTCTTGGGGTCTAAAGCATACTCAAGCCAAAATCAAGAGTATTAACGAACAGTGTGTTATTCTAG-TCAAGAGAAAATCCATAG-TGGCAAGGTCAAGGTAGCCCTGCTGTGGGCAT---GAAGGAATGGACAGGTTGCTTGGGGAC-------ATCAGACAGAGCTGTTGGGTATTTGGACTTGGCTAGACTGGGCTGAATAGTCAGCTTGAACATGGAG--------GGCATGCCAGGTGGGCA-GGAGAGAAATAGAGATGTCTGGTGTGGCCTCAGTACC-CAGGTTTGACTAACCC----TGCGGACAGACGCGGGTCTTCAGCACCCCCTCCAACTCCTGCCTGGGCTG-GGTGTTCCGCAGCAATAGCCGGTTTCAGAAACCAGGGAGGGAAGAGGAGGCCGCACTCCAC-CAGGGAGGCTAGAGC-CTGCCAAGCAAGCTGGTACTGGAATTATTTGCAGTCCATATGCCAATTTGCTTTGTCATTGCCTGGCTATTTTTAGAAGCCTCTGGCGTATCTAGGAAACCAGAATCTGTTGACTGTGTTTCTTCAGGGCGAGGAGTGTGATTATTTCCCAGAGATGCAGGAGGAATGTGCGAGGTCGGGCTGTGGGAAGGCAACCTCTCCTCCTAGGGTCAGGACTCGTGTGCTGACAGCACCCACGGGGCACTGT--CCTGCCCTCCCACAGGGCTTGTGGCTAACCTGTCTGCTGTGAGTCTAAGGT-----------CCGAGTGGAACATCGGCAGGGGTTGGGAGCCTTC-TTTGGGCAACTATTCAGAGGGTTCAGACA-GGTTCCC--CCCTTATGATCCCCAGGACAGCAGGTTGATACTGTTCTAGGAGCATCGGGGCAAACCAATCCTTTGCTCCGTCTTCCTAAGGAAAAATGGAGATCAGAGAGAAGGG
s HiC_scaffold_1 116122014 2188 - 233722169 AATTTTGAAATGATTTGCAAGACTAAGGGTTTCTTCCAAAGAGACTCTGACTGCAGCTGGTTGTTTCCCAACCTTTTTTGC----TTGTCCTTCTGTTCATTCTTCTCCTTGCATTTGACACTTCCTTCAGCTCTCCTATTCCCTGCCTTATCTTGGCTCTGGCT-AATGAGCTCTAAGTATCAAGGGTGACTTTGGGCTGAACTGTTTGCATATCTTATTTC--TTTCAGGCA--CTGATCATCTTGCTTGCTCTCTCTGTCCTCCTAGCCTGCTCTGCGTCCTGGATGGCATTACAAGTGCTTCCTTGTTGCCTAGGGTCCAGTTGAACTCAGCCAGTGGGGGGCACTGTCAGGAGTCTGGAGGATATGAAGCCTGGAGGAA----GCCAGGTCTATTTTCCTCTGTTGCTCCC-AAATCTGAGCAT----AAGGAGAATTCCTTCCAGGCAGCCCCTCAGTCCCTGTTCCCATTCTCCCTGATCC----CACCTCTGTCTCTTCAGACTTAGGCATggtcacagcttcctgccactgCTTCTCTTTGGGCACCTTTGTACCCCTTCTTGGCCTTTTGTACCTGCCCCCACCTCTGTAAATGATCCT-TCCCACCCAGTCTCACATCAGAGGGTGTCTGGTACCTGCCTACCCTGACTCT------AGTTTGAGGGAG-----TACTGTGTTAGAAGGGATATTGTGTCTTAGTGAAGGGGACTTTATGCTGTAGGCCAGTGGAAAGCAAGTCCAGCTACTCTTTCCTCAGCTGTAATCTTGTACAAATTACTCAGGTTCTCCAAGCTGCTTTCC-----TTAATTGGTTAACagtaagaaaaacagtaagatgaTAGAACAATCCCTACTTTAGCAAGTGTGGTGAACACCTATAGTCCCAACTATTTTGTAAGTCTGAGTCAGaagcattgcaagtttgagaccaagtTAGggagacctatctcaaaatacaaaaagagcCCAGCTCTGTGGTACAAAATTTACCAGCTATGTTCAAAAacccagtgccaccaaaaaaaaatccctacTTTATGGGATCATTGAGGGAactgaatgaaaaacaaatgagGTAGTTTGTGATAG---CTTAGTAGAGTGGCTAGTGGGTATTAGAAGGCATGTTACCCTGCCCTCAACACAAATACCCTTTTTAAAGCTGTGGACCTGTCTCTTTCCTCTTTGGAATCCTCATGCTGATACACCACCCAGCACAGAACC--TGGCAGAGTCAACACTCAACATGCAGGGATTGGAGGATGGAGGAGCTGTGTTA-------GGAAAGCACTTCTCAGAGT---CTCCATCCTGAGGCCAGGAGCAGATTTGGGTCAAAATAAGAGGTGTCA-CAGACACTGTTCGGTCCCAGATCAAGAGAGGATCCTGAGGTAGGAAGGTCATAGTTGCCCCATTGTGGTCATAAAGGAGGAAGGAGCTGGTTGCTTGAGGATTCCTAGTCCCATGCAGAG-GGATGGGT-----GGCCTGACTAG----GAGTGGACATTTGCTGGGAGTATAGAGTGGCAGAGGACATGGTAGATGGACAAGGAAGGAAGTGGGAGAAGCCAGAGTAGCTTCATCCCAGCAGAACACACTAGCCTCAGGTGGGACCCACCATGGGTCTCCAATTGCCCCTCCAGCTCACACTTGGCCTGAGGTGTTCAGCAACAAGAGACTGTTTCAGAAACAGGggtgggaagaggaggaagcgcccagcactgggaggctcgAGTGCTGCCAAGCAAGCTGGTACTGGAATTATTTGCAGTCCATATGCCAATTTGCTTTGTCATTGCCTGGCTATTTTTAGAAGCCTCTAGCGTATCTAGGAAACCAGAATCTGTTGACTGTGTTTCTTCAGTGCAGGGAGTGTGATTATTTCCCAGAGATGCTGAAGGAATGTGTGAGGTCAGGCTATGGGAAGATGAcctctcccctctgggtcaggACTTATGTGCAGGTAGCACCCATGTGGCTGCATTCCCTGCCCTCCCAAAGGGCACATACTGCCCTTGTTGGTTCCAAGTCCAGGGTCTTGACCTTTCCCAGGTGGAATATTGGCAGAGAGCCGGAGCCTCCATTTTGGCAACCACT-GGAGGGTCCAGATGTGGTTCCCCTCCCACATGTTCCTCAGAATATCAGGTGGGGTTTG-TCCAGCAGCCTCAGGAAACAGTTGTCCTTTGTTCCCTGTTTCTAAGGAAAAGTGAGAAGTAGTGGGAAAGG

a score=91561
s chr3           105528180 3041 + 160039680 AGGTGGCAACTTTCTGAAAATTATTTGATGTTTTGAAAACTTACCATGAGGTTCAGACATACTAGCCC-TGGAATCATTAACTCTCAGCCCT--------------GGTTCA--GCTATGGAGGTTGC----CCTACTGCTCTGTAATGGTTCTGTCTCCCACTTCCTGGGGT-TTACTCCATGTGTGT-----------TCCAATCAGG-AGATTAATAGAACACTTTCAGATCTCCAG-AGCACATTTTGGTG-TCAACTTTGAGCATTCCAGCCTTCTCA-TCTGTTTCAGTTCCAAAAATTTGGGGCTGTATT--GGTTTGAGTTCCTTTTCCTAGTGCCAAACCTTGGAATTGGGTAATGGCAGTAGACCGGAGAAGTTGT-----------------------------------------------TGTCCATTGTTT-----GAAAGCATCCTTTTTCATATGCTCTGTGGTATTTTAGTTGTTTAGAGACAAAAGATAAGCTGAGCCC---TCACTGTGTGTTGTAATGTAACATGGactttcattcctccttattgtgaaattggggaaaccaagtcacagagagctgatgtaattttactaaaccaccgttctccataaggggcagagtttttatttgagccctggtcagctgtcttcactaaaccgtcagttccacgaggtcaaggaccttgcctgtcttg-------------------------gcaca-----------------------tggaagtggtaatgaataaatgttgactggatgaagaaatGGTCGATCTAAGGCTGAAGAGAATCCTTCCTGGGATGGAGAGGGGACGCGCTCAGCCTTTCCTAT-----ACCCGGGTTGTGGTTGGGTTTATAT-GTCCCAGCAGAACAGCC-------TCTGCCGATTAACAAGTTCTGGAGGCTCCAAGCCGCAGCAAATATTTCTCTTCTTACTCCTCCGTACACCTTGTAGACACCCCTGTGTGTAAGCAGCAGCTGCTGCTGCTTTCGAATACCAAATCTGCTGTCTGGCTCCCACATTGAAACATATCATTTTAATCATGTTCTTTCAAGCCAGGAAGCCAATTTGCATTACAAAAGTCAAATTCCTTTCCCTGGTGGCAGTCATGCAAAAGTCTTGGTTTCCATCTCACTTTTACCCTGGGTGGAA-GTTCTAGACGAACTTGAGCTTATCTTGGTCCAAGCCAGCACCAC-----------------------CTTACAGAGTGCACCCCTCTTCCCACCCTCCTACTTCCTACCCTGCATTCTTTTGGGCTGATGGAGAAAAGGGAGCCAGAATTCTCTCCCAGTGTTCTCCTTATCCAGCCAGAACCATAGGTCTATTTCAAATGATGCCAGAGCGATTGATTGAAAATTATATGCTCATTTTTCCATCTGCATAATTTTGCATATTTATTTAATGGCCAAGTAAACTCATTTGGAGTCCCTCATTGCTTCTCTTTCCCTCCTACTATTGACTTATCTTCTAGGTCTGGCTCAGCTCTTG---------------TGGTCTCTGTTCCGACAGGGGAAACAGGCACTTTCCAGGAGGCCTCTAAAAGCAGCCCTGGTCCAGTCTTTCAGAGTTTGACCCTTGGTCCTGTGACCCAAA---------------GTTGTCCCGGTCAGCTAAGGTCTGAACCAGGCTAGGTGGCTGGAAAAAGTGGA--GGGTGAGGC-TAGACTTGCTTGTCAGGAAGATTTCAAGTAGACATGTTGTCCAGCCACCCTGCAGACGAGTGTGCCCCTGGGGACTAAGCTGCTGTCACTGTGGGTAATTGGATTCTGGCTCCCCAGCAGGGCCGGCTCTGGTTAACCTTTAGGATTAATTACTCCAGTCGACCTCCACTGCCTGATCTGGCCGGCTGTCTTCCCAGCTTTTGATCAGAATGCCCCAGGGGC------TCAGAGACTGTAT-CAGGGCAGGAGCAAGCCTGAGAGATACTCACAGGGGCTTGCTGTCCA---------------CTTGAGGATGATGCTGTCCCTCCGC-------CCCTTTCCATCCACAGGCCTTCCTGAGGCCATTAAAGGGACCACACAGTATGAGGTAGTATGGCATCAACAGCTATGCTAAAAAGGAATGCTAATCCCCCCCTCCCTATCCACCAAGTGCTCAGAGAAGGTGCCAGTGGCTATGTTTCTTAAGGGGATGACTGAGTTTGGAAATATCTTGCAGTGG----AAAGCTA--TAGTTGGCTCCCAGGCCACCAGAAGTTCACTCCTGCTGTGTTTAATCCCTGGGAGGATATAGATTTGAAGATGGGGAACCAGTACATCCTGTGCATACCAAGAGCGCCAGAGATCTGTGGCCAGGTGTAGCAGCAATGGCAGGAatccatgaagtgcttattaggagcaggcacgcagcctgctgttacctcagtccatcctcacgacacacctggaaagggcatgctgtcatgacccccatgtcctaaaggagaaaacaaaaacaagcctagagctgttgctggcgaagact----acacagttgctc----atggc----agggcattcaaaAAGGAGAGTCATTTGTA---------GAGGGGTGGGGGGAGGAAATAAAAGGCAGGGACCATGGTGACAGTTGGGGTTGTAACCTA----------TGGCACAGAAAACAGCCATCCCCT--------CTCATCTAAGTTTCTGAATAG--GTGACAATTCAAGTGCTAAGG-TGCCTGTGCA------CCCCATGTGC-TCCATCTCCCTCCTCATGCAGATCAATAATC--------------------CGTCAGTCAGCAAATCCACGTTAACACCAAGTGTCCCTCTGTC----TGTTCCTCAGTTTGATTGGGAGGGTTGCCAACACTGTG-CCTGTCAGCGGGGCCCTCCTACACCACCCTTTATTCCATCCGGCCTCCACAGTTGGCAGTGAGCAGTGGATCACGGAAAAAGACTTTCCTGGAAAGCCTGATTGGCCACTCATTTGTTTCCGCTGCCACCTCCCCACCCCCCCAGATGGCAATGGGCGTTGCCATGACAACGTAATGGGAAGCAATCACACCTATTGTGGGGCAGGACTGTTGACTTGCATGAAAGAGCATGTGTGGGGCTGAGGAGGAGGGGAGAGAAACATAGACCTTCTTGTGCCCAGGAAGAAAGGATGTTAGTTCAGAATCAAGACGCT-GCCTTTGGGATTCTAAACGC-CACCC-ATGCCAATGGAAGCCTCGCCGCTGGCCAGCTCACAGTTTTCTCCTACTAGGGggaaaaaaagg
s HiC_scaffold_1 116130874 3214 - 233722169 AGATGGTAACTTTCTGAGCCTT-TATGAT---------ACTTATTACAAGGTTTGTCCTCTTTGGCTTGTGGGAACATAAACTTCCAGCTCTATAGGCTTGTCCAAGGTACAAGGTTCTGGAAATTGTTTGACCTTCTGCTTTGTAGTGATTCT----CCAGCCTCATGGAATATTATTCCTTGTGTCTGTGAATTAATATCTAACCAAATATGTGAGGAGATCCCTTTCAGATCTCCAGTGGCTCTTTCTGGTAATTTGTCCTGAATAGTCTAGCTACCTCAGTTTTCTTGAATTCTAAGAATTCTATGACCTATTCAGGTTCTTCTTTCCTTGCTGAGT--------TGGAAATTGAATCACAGCAGTAGAATGAGAAAACTGTGGAGATTACCTTGTACAATTCCTCTGTCAGGGATCATAATCCTATACTGCCCATTgtccagaaagaaaata-cttctttcatat-ttttatgtt--tttaggtATTTAAAAAAGCAAGGTAAAGTCAATCCCTGTCACTCTAT----CATAGCAGTATGTAATTtcattctc---tattttaaaat-gaagaaacagaggcaCAAAAAGATTAAGCAATATG-------TAACATTATTTGTAAATGGTAGGGTCCACATTTGAGGCCTGGTCAGCATTCTCCACTGAACTATCAGTTCCTTAAGGCCTATGACCTTGCCAGCCTTGTTCACTGCTGTTTACTAGGCACCTGGCACAGCACCCTACCTGTGCTACACCTGTGGAGTTGGGACGCAATAAATATTGAATGAATGA-----TGACCAATCTGGAACTACATGGAGTTCTGCCCAGGA----AAAACGAGGCACTCAGTCTTTCTTATCCCACACCCAAATTGCCGTTAGGTTTTTGTAGTCCTACCTGAATGACACACGTGATTAGGTGATTAGCACGTCACAAGATCTCTGGGCCCCAGCAAACACTTCTTTATGTACTCTTCCACATACTGTGCAG-CACCCCTGTGTGtaagcagcagctgctgct---ttCTAATACCAAATCTGTTGTCTGGCTCCCACATTGAAACGTATCATTTTAATCATGTACTTTCAAGCCAGGAAGCCAATTTGCATTACAAAAGTCAAATTCCTTTCCCTGGTGACAGGCATGCAAAAGACTTGGCTTCCTTTTCACTTTTGTCCAGGATGTAAGGTTCTGGACATGTAGGAGCCTATCTTAACCTGAGTCGGggctacaaaaaaaaagcaaaaagggtcTTCTGGCACAGCATACCTCTTTCCCAACCTCTCTGCACCATCCTCTACGTTC-TTTGGAATGGTGGAAAAAAGGGAGCCAGAAGTCCCTCCCAGTGGCGCCCTAAT----CCAGAACCATAGCTCTGTTTCAGATGGTGCCAGAGCAGTTGATTGAAAATTATATGCCTGTTTCCACATCTgcataattttgcatatttatttaatggTCAAATAAACTCATTTGGAATCTctcattgcttttctttcctttctgcttttgaCATGTCATCTAGTTCTGGCTCAG-TCTTGAAAAATGACCAGTTCTCATCTCTGTTTCTCCAAGGGAAATAGGCTCTTTTCAGGAGGCTTTTAGTGCCATTCC-GATCTGGCCTCCCAGAATTCTCTTCTTTGCCCCACAACCCAGGCACTGTGGCCCGGGCAATGTTCTGGTCATCTGAGACGTGTTCCTGGCTAGGCTG-TCAAAGGAGTGGAAGGGGTGAGGCGTAG--TTACTTGTCAGGAATATTTCAAGTGGACAGGTTGTTGTGCTGCCCTGCAGATGAGTTTCTCCCTGGGGACTAAGCTGCTGTCACTGTGGGTAATTGGATTCCTGCTCCCCAGCAGGACAGGCACTGG-TAACCTTTAGGATTAATTACTCCAGTGGACCTCAGCTGTCTACTCTGGCTAGCTGTTCTTCCTACTTTTGATCAGAAATCCCCAGGAGCTTGGTGTCAAGTACTGGGTATAGGACAGGAGTCAGCCAGACACTTCTTGATCTGAGATAACTGCCCATGTATGCCCGCAGGCCCCAAAGATGGTGCTATGCCTCACCTCCCAAACCCATTCCATGTGTAACCCTCCTGGTGG--GGGAAAGAGAGTCTTCAGTCAATGGTTGTATGAAGTCAAGA-CCATTCTAAAAAAAAGCTTGAGACTGCTCCTCCC------CCAGGTACTCCAACAGAATGTC-------ACCTATCTTGAAAGATAAAC--AGTGTGGGAGTCTcttatagcaaaaacaaaactaccTCTGTGGCTCTGAGGCCACTGAAAATGCATTCCTGCTGTGTTCTTGCACC---AGAATATAGGACCT-ATATGGGGAGCCATTGCATGGCACCATCCTTGACAGCACAGAGGGTC----------TGTAATAGCAGTGGCTGGCGTCTGTTGAATACTCACCCTGAGCAAGCAC----------TTCACTGCATTTAGTCCCAACAGCA---CTATACAGGGTATGCTGATATGATCCCTGTGTCTTAAATAAGATGAC---------CTGAGAGCTGCTTATAGGGAGAGCTTTCAAAACAGTGTTTCCCTAATGTCTTTGGAGGTCTTGATAATGG---GTCTTTTCTATTTCTACTCTGAGGACAGGAAGGGGAGATA----------ACCATGATGACTCTAGATTCTGTAATTTGGGGCTTCTCTTGGCATAGGGAAAAATTAGTCCCTGTGTCTACTTCAGGTCAATTACATGACAGTTGCGACCTTACAAGGCCTTTTGCTTTCTATGCAGTCATTTGCTATGTGTATATATCTCCTTTCtcattctgttcaataatcctGATCATTCTAATCAATATCAATAGTCTTCATATACATGTTAACATTGACTAATGCCCTGTCTCTTTGTCCCTTGGTCAGACTGGAAGGA-AGCTATGACTGTGTCCCACTATCAAGGTCCTCCTACACTACCCTGCATTCCACACAGCTCTAGTAATTGGCAATGAGCAGTATGCCATG--ATGAGACTTTCCTGGAAAGCCTGATTGGCCACTCATCTGTTTCCGCTGCCAACTCCCCA--CCCCCAGGTGGCAGTGGGTGTTGCCATG--AATGTAATGGGAAGCAATCACACCTGTTGTGGGGCAGGAATGTTGACTTGCATGAAAGAGCATGGGTAGGGCTGGGAAGAAGATGAA------ACAGACCTTCTTGGGgccagaaagaaaggaagttaaTTTAGA--TGAGTTGCCAGCCGTCTGAATTTTAAATGCTCATCCAATGCCTATGGAAACCTTATTACCTGCCAGCTCACATTATTCTTCTACT----GTCAAAAAAGG

a score=64463
s chr3           105538213 1809 + 160039680 TCCCCAGCTGGTTCAGGTGCTACAGGTTTGTGCTCA------------------------------CTGCCCAGCGTTGGAGCTAGAAAACTC---TACATCT-TTCTGTCACTGGGG-TCCTTATGAAAGGTACCATGGCCCTCTGTGCTCATATTCCCATTAGAATTGTAGTAGTTACTCACAGAGTTGTGACAGTTGCTGAGGTGATGGTACAGATGGCTT--CTTTGTTTTGCCCACTGCCTGAGTGTTCTGGGTACCTGTCTCCCCACCACCCCACCGCATCCTGCTCTGGCCTCTTCAGTTTGATATGGTATCCAGCACACCCTGCTGTGTGGTCACAGATGCTTAATCAAAGGGTGTGTACAGAGAGAATGAAGACCTGGGCCTGCTCTGTGGAGTGTGCCTCAGAAATCCACTCAGAGAACAAGACCACGCAGTTTCTAAATCAGACATTTGGGCTGGCTTAGCATGAAAGGCTCTGATGAGCAGGGACTGATTCATCCATTCTTGGTGTTCTTTGGAGGCACACAGAAGAGTCCT--AAGAATGTCGTGGACTTCCGGTTTGAATAACATAGCT---TCCCCCATCGTTGCCAGCAGGGCCACCCCTGACCTACGCTATTG--AATGTCTTGGAGTGGCCAGGGTAAAGGGACAGGACCCCTGTTTGTCCAGCTAGGAGCCTATGAGGTTG-----GTAACTTTGTGTCCTGAGTCAGCCTAACACTGCCAAGCCTCTGCCTTCTCCCTCCCTCTGTCTGCTCTG-CGAGGTCGCCATGGTGACTTCCTGTCCTCAGTGTGTCAGGG-TCTATCAGAGCCAATCGGTGGCAGGTGCAGATAAGGGTCTCTAAGCAGGGGTGGCTGTCTCG-----TGCTGCCGCCAAGCGCAGCATTGATTCTCGCCTGTGCCAGTGCCCATGAGGAC-AGGGAGGCTGGGGGAGGAGGGAGCCCTTTCTATATTTAGCTCCCTCACTGGGTTCGTCCCAATGGAC-GTTTAGAAAGAGGCTGACTTCCAGC----CATGAGAAGGTTTAACGTTCCTCAATTAGGCACAGCCTACAGGGGGGCTGTTTCACCCATTGAGAGGGTTAAAA-GAAGTATATAGAAAAAAG---AAAGGGGAAGAG-GTGATAAAGCTGATTTATAGCAACCAGAGGAGCTGCCCCCA--AACAGCTCCTCTCCACACCTCAGAATTCACACTCTTGGAC-TTGGAAGGAGGC-TCCTGCAGGCACCAGAGAAGGC-TCAGAGCCTCCGAGTGCAGAA----CCTAGGAGGGGGC--------------TGCTTAGTGGTCAG--TCAGC-GAGACAGAGCTGGGAGCAATTGAGCATTTGCCCTA--GCATGCTGGAGTAATGACCCCTCAGAAAGATTCCAAGTTTGGAAGGGCAGGGCAGACTTGAGTGGTTGGAAATTGAGGTTAATGGCCAGCCAGCCTGGAAGATGTGCTCTGCGTGTCCCATCTCACA-CCCTCCAAAGACACATGAAAGGGGTTTAGCACACCAGAGCCAGTAAATTGTTTATTTGCCTGAATTCACCAGGTAATTGCATGTTCCTCTGCTGGCTTCTGCTGCC------------TGCATTGGGCTTTTT----------------AGAGAGATAAGCAAAGGCAAAATGAGGGTTCTGGTCTCCTGAGGCTCTTATGCTCCGAGTTACACGACAAGAGATGCAGAAGGAAGGGCCAAGGCAGAGGCTCATGCAAATGAGCGTGATGGGAAATGGAGGAGGGGCTGAAGGAGGAGCA-CCCGATGGA-----TCTGAGGAACCC---------------------------TCGGCCTGACATTCTTTTGGGATATTGACAATGCCAGGCGACAGGTTCCATCTAAGATAATTCTGAGCACTCAAGTCTTATCCAAATATGTCCATAGCTACAAGCAGCC
s HiC_scaffold_1 116137072 1896 - 233722169 TCCCTAGGTGGCTCTGATGCTGCCAGTTCATGGTCAAGTGTTTTAGAACCACCATCACTAAGAGTCTTTCTCAGGATTA-AGCTAGCAAACTCGAGTGTGCCAATTCTGTTATTGGAGAGCCTTGTTAGAGGTATTGTACATATCTGCTCTCATATT------AGAATCATGGAGACCTCTTGCAAGATTGGGATGATCACTAAGGTGTTGGTGCAAATGTTTTTaccctctcctgcc---tgccttagTGTCCTGAGTACATGTTTCCCA------TCAGTGCATCCTGTTT--GCCTCTG----TGGGTATGGCACTGGGCACACAGTGCCATGCAGACACAGATGCCTCATCAAAGGGTGTACATGGAGATAATGAAGACCTGGGCCTGCTCTG--GAGTGTGCCTCAGAAAGCAACTCAGAGAACAAGACCACGCAGTTTCTAAATCAGTCATTTGGGCTGGTTTAACATGAAAGGCTCTGATGAGGCGGGACTGATTCATCCATTCTTGATGTTCTGGGGAGGTGTGCGGAATAGCTCCTGGAGAATGCCATGGACTT-CAGCATAAATAACACAACTGGCCTCCCCACCATCACCAACAGGGCTGCCCTT-----------TTGCCAGTGGCCTGAAGCAGCCAGGCAAATGGCAGAGGATTCTCACTTGG-CAACTGGAAGCCTGTGAGGATGCCGGCCTGAGTTTGTGTCCACAATCTGCCTCACACAGCCAAACCTCTGTC----CCTTCCTGCTTGCTGGACTATTAAGGTCACCATGGTGGCTTCCTGTCCTTAGTATATCAGGGCCCTATCAGAGCCAGTCATTTGCAGGTGTAGATAAGAGTCTCTAAGCGGAGGTGGCTGTCACACAGCCTGCTGCCATCAAGCACAGCATCGATCCTCTCCTATGCCTGTGCAACAGAGGACAAgggaggctgggggaggagggagccCTTTCTATATTTAGCTCCTGCA-TGGGTTTGTCCCAGTGGACAGCTTTGAAAGAGCGTGACCTACAGCCCAGCATGCACAGGTTTAACATTCTTCAATTAAGCATACCCTACATGGCGTTGTGTGTTGCCACTGAGAGAGccaaaacaaaataggtaaaaagaagagcaaaaggaaagagaacaacAAAGCTGATTTATAGCGACTAGTAAAACTACTTGTAGCAGCATCTCCACCCACCTCCCCAAATGTGTACCTCCAGGACAATAGAAGGAGGTAACAGGCAGGCATTGGGAAAGACAGGGGAACATCAAGGTGGGGGATCCCCCTACAAAGGATTAACAGTTAATTTTGTCCCTAATGTGCAACCTCAGCAGAGGCAGAGCCCAGGGCAACTGAGCATTTGCCCTAAGGTCCACTGG---------TCCTCTGGAGAGCACTA------------------AGACCTGGGGAACTGGAAATGGAGGTTAATGGCCAGAGACCATGG-GGGTTTGCTTGGAGTGCCTCCCCCTAAATCCCTCGAAAGACTCATGAAAGGCATTCAGCACACCAGAGCCAATAAATTGTTTATTTGCCTGAATTCACCAGGTAATTGCCTGTCCctctgcttgcttttgctgtccaaGTTGTGGCATGTGCTGAGCTTCCTCAGCCTGAAGCAATGCAGAGAGATAAGCAAAGGAGAAATTGAGGTTCTGGCCTCTTGAGATTCCTAAATTCCCAGAAACACAGCATGAAAAGCAGACAGTAGATCAGAAGTAGAGGCTCATGCAAACAAGCATGACATGAGCTAGCAGAGGATCTGTGGGAAGAGCAGGCCAATAGGGGCTTCATGAGCAGTCCCTACCAGTATGTGTGGGGCATGCCCAGCCAGCCTGGTATTCCACAGGGATATTGCTGATATCAGGGAAAGGGTTTAGTTCAAGATATATCTCATTGTTCAAATTTTGCCCAGATATGGCAGTAGATTCAAATGACC

a score=73483
s chr3           105540018 6334 + 160039680 [encoded data, 6922 characters]
s HiC_scaffold_1 116139447 6127 - 233722169 [encoded data, 6922 characters]

a score=32584
s chr3           105546532 1025 + 160039680 AGTCACATCTGCCTCCCTGTACCACCGGGAGGA-AAACTAGCCAG---GCACTGAGTGTGGGCC--CATGGGC-CTCCCAGCCAGCG-----ACAGTCCTCCTCAGTTTTT------------CTGAAAGCGATTTTGTCCAAAGGCAGGGCCAGCAGGGTGGCTTCCTGCG----CTCTTCCCCCTGGCATTTGACCAAGCTTTCTTC------------------------CGCGCACGGATGTGGAACTCTTC-----CTCACCC-CGGGAGCTCACAGGAGGTATGATGATACAGCAGGCCTGCACACTGGGCCTGGGAAGGAGCTGGTGTTGTTCACAGCTTCCTGCCCACCCACTGGGTCCAGAGGC------------TATCCCCAGGGAGGCGAAGGAAGCCGCTCAGAGCAGATGGAGAAGGGCCT-CTCAGCAGCCCCCTGATTCAT-----GCCAAATAACCCAGTAAGGTGACTGATTTAGGGAACATGCCAGGGTTGATATCGAGGCCTAAGAGCTGGAATCCAGCTCCCTGGGGAAAGGAAAATGAGAAATATGACTAAACCGTCCTCCCACACGG-CTGTCATTAAAACAGTGTTCGGGATGTCACAGATATTTTTGCTTCGTCTCCAAATAATTTGTTCTTCCAAC-ttaaattttttt-aatttaatttttattaCTCCTTCCTCCACCTCCCCA------------TTTGTTCTCTGAGGCCAAGGAGACT----GGCGTGTATTCCACGTCCCGAGGGCCTCCCCTGAGCTTCAGAGTCAAGGC-TATACACTCCACGCCCCCAAGTCTACTAGACAGCCTGTTCCCCC--CAGGCAGAGtcttccccctcctgcccgctccccttctctagtctttctcccattcttctattccccccccacccgcttctctccattctcc----ttctccttcctcatttctcctcccctttacttgttcctccctcctctcttctgagtttcttcctccccccccccaacctcatcttctgtttcttccctccctctactgtcttcatccttgttccccttc----ccacttcttccctccagttcatctgccttcct-cttcttctctctttgcttttt
s HiC_scaffold_1 116146324 1078 - 233722169 AGGCACACCTGCTCCCCAGGGATGATGTGAGGAGAAACAAACCAACATGTGTAGAGTGTGGTCCACCATGAGCACTCACATCCTGTAGTCTTAAAATCATCCTCATTAttttcatcttcagttctggaaGTACTTTTGCCCAAAAGAGGAAATAGCAGagaagatgcttccaagactTCTTCCCCCTGGTGTTTAAC-AAGCTTGCTTCGAAGAAATCCTTTCCCACACTTACTGTGGCCAGATCTGGAACCAGTCACAGCTTTACCCTCAAGCGCTTGCAGGCCGTGTG--GACACAGCAGCCCTCCGTG-TGGCCCTGTG--GGAGGTG-------------CTTCCTGCCCACCCACTAGGCCCTGGGGCCCATTCTCTGGGTACCCCATGGAGGGCAAAGGAAGGCA-TCCTAGCATATGAAGAAGGGGTTACTCAGCAGCCCCCTGACTCATCCTGCACTGAATAATCCAAGAAGGTGACTGATTTAGGGAACATGCCAAT-TTGATATCAGGGCCTGATCACTGGTGTGCAGCTCCCTggggaagagaaaatgaaaaatatgactaAACTGTCCTCCCACACGGGCTGTCATTAAAACAGTGCTTGGTATGTCACAGATATTTTTGCTTCGTCTCCAAATAATTTGTTCTtccaactttaaatttttttaaatttaatttttaatactcCTTCCTCCACCTCCCCATTTAGTGTGCACTTTGCGCTGTGAGGCCAGGGGGACTATGAAGTGTGTCTTGTGTTGCCCAATGG-GTAACCTGACCTTCAGAGTCAGGACACATCGCCCCTACCCCGAGAAGCCT-----GTAGGCTGGTCCCACAGAAAGCAGagtcctcctcctttt----cctccccttc-ctcatcctcctccc---------ctccctccttgaccgcctccctctcctcccctctgttCCCGTTTCTCAGCCCTCTCCACCTCCCTTTGTTACTTCTCTTCCTCAT----GTCTTCTCCTCCTCACCCTCG---TCTTCCTTTGTTCTGTGCCTCCCCAT------Ttcatcctccttcctctcctgctcccctttttcctcctcctttctcctcctcgctactttctccctctgtcctttct

a score=69686
s chr3           105551238 4495 + 160039680 [encoded data, 5179 characters]
s HiC_scaffold_1 116149726 4719 - 233722169 [encoded data, 5179 characters]

a score=91890
s chr3           105559303 3154 + 160039680 GATAGGCCAAGGAAGAAGACAACTGTTTGGGCTTCGAGAAGCTTTGACCAGCTTTTGA-----------TGCCTCTAAGAG----GTCT----------------------GCTGTCAAGGAAGGCCATATAGAGGCAAGGAGACCAGCTGGCTTGGGAAAGTGGGTCACCGTGTGGTTTTCACTGTTT--TCATTAGAGACACTGAAGCAAGCAACAGAGACTTA------------GACCACAGCTGGCTGTACCAAGGTCCTAGGG-GAGAGTGTGGGGTTCCAG-CCCCTCCCTGTTGGACTCTCTTCCACCACCCTCTTCTAGCCTCCCTATGACAGCTGCAGTGCCCACCCCCAGTCCCTGTTTGGAGCTGTGATTAATACAGGTTTAAAATAATCTTTGTCTTCTCCCTTTGTCCGCCCCCAGTGCAGCCGCTGCTCTCCTCCCATCCCCCACACCCTCACCCTCTG--CTGAATTAGCCACACCTCACAAACCAGCCTGGGTGCTACTTCAGCCTGGAGCTAGGCTTTGCCTTACTCTCCATTCCACAGACCCCACCCCCACCCCCCAAGGC---------ATGCAC-CCAGACTGGGAGGAGAGAACAAAGCTGTACTTCTAGATCCCTTCTTGATCCCCCAAACTCCACAGCAACCTCTTCCTAAGAGCTCCAACTGCATGCAGGAAGTGC---------TGCCTTACTCCA----GTATGAAACCCCAG-----TTAGTGCTTC--CTGACAT---------ACACAGGAAGTCTATTCCTCCGTCACTCCATCCGCTGGCTtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctccctctc-cctctctctctcAAAGAAAAAGATTTTCACTTCTCTGCTAATA----------------------------GCTCCATGAAACCAAAAAAGAAAACTAAAG----------TTAAGTGGCTTTCACAAGATCCCAGCAGAAACC---GTGCCGGAGGCCAGATCCAGCAGTCAGCAGCTAGCCGCCAGGAGCCAGCCTCCGCTGAGGAGTCCACCCACCTCTTCCTCCCCAAAGCCCCTAGGTCTCTGTTCATGCTTCCCTCTTGTGCCAGGGCACTATGGCATTCCCCATTTTCTTTCTCTCCCAGGAGTAAACCTGAT----AATAGACAGCTGCCCCTTAGAGCCATGCGACT--GAGCGAAACACAGTACTTTTGTATGGTTTCTGCCC-ATTTGGTTAGACTCATGGTTGGCTGTGTGGGTGTGGCTAAGGGGAATCAGCATAGCATGGATTGGAGCAGGTAT-----AATCACCAAGCTGAaggatgcta-agaggggaagggatacaaaggtccttattcaaccccttttcactttacaaaggagaaaactgtggtgtagagagCCTTGAGCGCTTGGAGCCAT-CTGCTATAGAATCATAGACCAACCTTGAAGGCCTTGTTCTTCACCCT----TAGAGGCTGTCCAGGAGTCCTGATGTGCCAGCTGAGATATAAAGGCCACTGTGATGACCTGGCTCTCAACAGTGACATTGCAGGTGGCACAGCACAGAGAATAG--ATTGTCCCACACACAGGAGCCAGAGACAGTGG--GTTAGGAAAGGATCAAATG----------CTGAGGAAG--------CAAGCTTTGACTTAGAAACCTGAAAACCCAGATATCTGGGTGATGTGAGGTACAGACAGCTGGCAGGGACTTGTGCCCACCTGGCCATGGCCAGGTGCTCACTTTGCT-TCAGGCTGAACTGGGCGCCCAACAACATCCAGCCCGCT------CTGCTCTGTGGGGT----GCGCGCTGATGAGCTTGTA-------TTAGACAG-GCTGAAGAATGCTCAGTTATTCCCGAATTGCTTGCTTGGGTTTAAAAGAAAAA--------GATGGAGATGGGGGAAATGTGTCCCTTTGGGTAA-AAAAGGAGACTGAGTGTGTTTGATGGCCTGGATGGAGTCAGGCTAAATATTTAATGTTCTTGACAGAGACCTGGAGGAGGCTGTCCCTTTCTCTAAACAGTGACATGCTAGGCTCACAGACTGGGAGACAGAGGAGCTGACCGCTGAGGCCCTGTGAGTTGCTTCCAGCTGCTGCTCAGAGAAAATAGGAGGCCAGGCTGGGGAATGTGACAGGGATACAGGGATACGGGGAGTGCAGGACCAGGAGCAGTGCAGACTGAAGTTGGGGTACAGGGGGGCAGGGACAGAATGAGAGCTTTCTTTATTAAAAAAAA-AATAGCAGTTCATTCTTTACATTTGGAATAAAAACCTGTTGTAATTACCTAGCAGTGGGAAAGCAATTTCCAAGTAGCTTTATTGTTCTGCTCCCCAACCAAATGTGCAACGAAACATCCACCAGGGACAAGCGCGAGCGAAGGCACACCGCAGTAACTATGATATTTAAATGTTTCCACAGTAGAAATTTCAATAAGGTTTAAATGAACCATAAGTTGATTTCTCTCCGGATTATTCTTTTCCTCCTCTTCCTTTATTACTTAAGACATTGTGCTCCTAGGCTGTACTCACACAGCCCTGGCAGAGCTGTCCCAGCAGGAAACTTCAAAACATTATTGGTTGCCATTCAGAGTGCCTCCCTCT---CAATGCTCCAAGGAACATGAGCTCCTACCACCCACCTGAGGTATTAGCTGGGTCACCTGAGGTCTC-AGGGCTCCCACCGCATATCCCAGAAGTAGCCTGGGTGGGATGACCAGGCATGGCTTCATGCCCCCTATACCTTTGCCTCTT---ATATGGATTGGCAACTTCCAGCC----AAAGG----------------ATTCAG-CTCTAAGTCTTAGGCCATTGGGGC-ATGTC-----AAGCCCTGGTAGGGCAGGGAATATGGCAGTGAGCTGAGTCTGAAATCAGAATGTCTAGATtccttctccttcttctccttctctttctccttctccttctccttctccttctccttctccttcttcttctTCAAGGGT-AGACTATTCCATCAATCTATTAATATCTAATAATGACACTAGTAGTAGC---------CATAGTATTACTATAGTGCCCCTCCTCTCTCACACACACACAC---------TTCCattctc---aacacagtactagtgattacactaca---atcccatttt--agaggagcaaactgagatttaaagagtttaagtcac---------ttgtccaaactctta--------------caggtagtG-TTGTCTTTACCTGTCTCAAGTCTCTATTACAGAAATATTGACTCTTTAGAAATCATACATTTGAAA---TGTGGATGAACCAACAGCAGAATAGGTATAAGGGGAAGGGTGTCTTCCTTGGGGTCt
s HiC_scaffold_1 116156718 3256 - 233722169 GATAGGCCAAGGAGGAG----ACTTGTTGGACAGTAGGAAACCACTGTCAGCTTTTGGGAAAAGTCACTTGATCCCAAGTGAGTCGTCCTAACTCTTCACACTTGTGGAAGGCTGTCAAG-AAGAGCACCTAGAAGCAGGGAGATCTGTTGGTCCAGA--------CCATAGTTGAGTTTTTACCATTTCTTCACTCTGATCTCTGGAGCAAACCACAGAGACTCAACAAAGCCCCAGGCTCACAGCTGGGCTCACCAGGGCCCTTGGGTGGAAGCGAGGAGTTTCGGGCCCCTCCCTACTGGACTTT--TCCACCACCCTCACCCATCCTCCCTATGACAGCTGCGGCACCCACCCCCAGTCCCTGTTTGGAGCAGTGATTAATACAGGTTTAAAATAATCTTTGTCTTCTCCCTTTGTCCGCCCCCAGCACAGCCGCTGCTCTCTTCCCATCCCCCATCCCCTCCCCCTATGTGCAGAGCTGGCCACACCTCAGAAACCAGACTCC-TGCCACCTCAGGCC----TTAGGCACTGCCTCCCTCACTCACTCACC-ATCCGAGGCCTGTCCCACAAGGTCACCTGTATATGCACTCCAGACCAGCAGCAGGTAGCACAGTGTCTCTTCTAGGCCCTttcttggcccccaattctgcaGTGATATCTGTTCCTCAGAATTTCTAGGACAGGGAGACACAGCAGTGGCTAATGTCTCTCTTCACTTGGTACCGACCTTGAGAGATATCAGTACCTCGATGGACATTTAGACTGGGCACAGGAGGCCCTGTCTT-----ACTCCAGT-GTTGAGTTGT---GATCAGTGCTTTTCAGTTTATGTGGAGTAGCCCTTGTTTCAGTTTCCCATTTGTCCTCTGGCTTCTCTCCCTCACCAAAAAATTGTTTTACTTCCTCATTGATACTATTAAATTGAGGGCATGGAGAGAAGCGTCCCATTAAACAGATGGAGAAAAACAAAGCTCATAGAGGTTAAGTGGTTTCCCCAAAGGTCAAAGCCAGACCTGAGTGCAGAGGGCCAGCTCCAAA--------------TGCCAGTCCCCAGTCTGTCCTGGCAAAGCCATCTATCTCCCTCCCTTCAAAGCTTCTGGATCTCCATTCTTATTTCTTCAACATGCCAGAGCACCATGGTGTTCCTCACTCTCTTTTTATCCCAAGAATAAACCTGATCATTAACAGATGGTTGCCCTCCAGAATCACGTGACTCTGAGCCAAGTGCAATGTTTTTGTCTGGCTCTAGCCCTGTGTATCTATATTTAGGGAAGGATATGTGAGTACAGATAA-----------------TGGGTTCAAGTCGGTATTGCCGAATTGTCAAGTTATAGCATATTATACCTTAAAAGGGATGCAAAGATGCTG-------CACCCATCATTTTTCAGAGCAAGAAAC--------AGAGAGGCAAGAAGACTGAGAGCCAGACAGCTATGgaatttcaggctgaccttcagg------CTCTTTACCCTGCCCCAGGGGCTGCCCTGGACTCCT-CTAAATCACAGGAGTTA-AGAAGCCACTGCCCTAAC--GTCTCCCTCCTGCAACACTGGAGGTGATGTCGtataaagaaaattcattttcccACACATAGTAGCCAGAGGCAGAGGAGGTTAGAGACGAAAGAAATGTGTCGGGTGACAGAGGAAGGTGGGCGACAGAGTTAAAC----AAACCTGGGGAACCAGATGCAAGAACGAAGCCCAGTGTGGGCAGCTGGCGGGCACTTGTGCCTGCCTGGCCTTAGGCAGGTGCTCACTTGGCTGCCGGGCTGAACTGTGCATCTGACAGCACAAAAGACACTTCTTGTCTGTTCTGTCTAGTAGTAGAGGACTGATGAGCTCATGCCTGTGCTCAGAAAGAGCTGACAAATGCTAAGTTAATCCCAAATTACTTGcttgggattaaaaaaaaaaaaaaaaaagatggacgTGGAG-AAATGTGTCACTTCGGATAGGAAAAGGAGACTGAGTGTGTTTGATGGCCTGGATGGAGCCAGGCTAAATATTTAATGTTCTTGACAGAGACCTGGAGGGGGCCGTCCCTTTCTCTAAACAGTGACACGCAAGGCTCA-GGGCTGGGAGACAGAGGTGCCAGCAGCTA--GACTAAAGAACTGCTCCCAGCTGCCTGTTCTAGGAAACAGGAAG---------GGCATGTGACAGGGC--------------ATGTGCGAGCAAAGGGTCAGTGCAGATTGAAGCTGGGGTACAGGGG--CTGGAGCCAACCAAGAGcttcctttattaaaaaaaataataacagttcATTTTTTACATTTGGAATAAAAACCTGTTGTAATTACCTAGCAGTGGGAAAGCAATTTCCAAGCAGCTTTATTGTTCTGCTCCCCAACTAAATGTGCAGCGAAACATCCACCAGGGAATAACAGGAGCAATGGCACACCGCAGTAACTATGATATTTAAACATTTCCACAGTAGAAATTTCAATAAGGTTTAAATGAACCATAAGCTGATTTCTCTCTAGATTATTTTT----GCCTCCTCCTTTATTGCTTAAGATATTATGCTCCTAAACCGTATTTATATGGTGCTAGCAAAGAAGTCCCAGCAGGAAACTTCAAAACTATATC--TTGCCACTCAGAGTGCCTGTCTCTATGCCATGTCCCAGGGAGAACAAGAACCTTCCATCTGCCTGAGACTCCCACTGAGGTATGTGAGGTATCTGGGGCTCTCACATTCTCTC-------------------------------TGGGCTCCTGTGTTCT-CAGTTGAACCTCCTGAAATAGTAACTGCCAAGTTATAAACTAGTAAAGGTAGAAAGGAGACCATAATTCAATTTCTAAGTCCTTGACCACCAAGACTATGTTTGAAGGATCCCCTGCTGAGCTGGGATCCTGGAAGTGGGtcaaatc--aaatcagaatgtttAG-----------------TATTTCTCTGTATTACGAGTATAGATGTAACTCTTAGAATTCCATGGAAGATACAAAAAGGGTCAGACTAGTCCATCAACC---------CCAATAATAGCTGTAGTAATAACTAAAACGTATACAGTTCTACTATAGACCTCCTTGTaacttacatacatatatataattttacttaatCCTCACAAACACAGAGAAATCGATATCACTATAATCAtcccatttttcaaatgaaaaaaccAAAGTACACAGAGCTTAATTCACAGGCAGTAGATGTTAAAGCTTGCAATAGCCCCCTTTACCAGCCTGTGCTTGGATTCACTTA-CTCAAGAGTACATTACTGAAACACTGACTCCTTAGAATTCAAGTAGTTGAAATCTTCTAGATGAGCCAATACTGAAACAGGTGAGTGGGGATG-----CTTCCTTGAGGACT

a score=14437
s chr3           105562846 365 + 160039680 CTTGAAGAGATTCAGAGAGCACATGCTGGCATGAGAGGCCAGAGGCTGCTCATGACAAGAAGACAG----------------TGAATTCAACCACTGTCTTCCTGCAGACTCTGCATGCGTCTGGTCACCCGAGTAAGCTCCCCTCTGCCGGGCTGAGATAAGTCATGTTCAGCCGAGCACACCATGTGGTTCTCTTCAGCACAGG-------CAGAGCTGGGAGAGAATAAAGAGCCCCGAGCATGGATTTCCATTTCAAGCTTTGAGAAACAGGCCATATCTAGGAATGTTTGGACTGAGAAACGCCTTCACACTGAGTTTTCTGTTCAAGGCCATATTTCAGGGGTCATTTAAGTAATCTCTGGAAGCTGAGAGGCAAGAATACA
s HiC_scaffold_1 116159972 375 - 233722169 CTTAAGGAACTGTGGAGACCGTGTGTAGGGATGAGAGCCC---TCCTTCCTGCAGGAAGAAAACGGCTCAAGACAGTTCCTTTGAATTCAACAGTTGTCTTCCTG-AGACTCTGCTTGCATCTGGACACCTAAGTAAGCTTC--TCTGCAAGGTTGAGATGTGGCGCGTTCAACTT-TTACACCATGTGGTTCTTTTCAGTCCTGTGGCACATCAGAGCCAGAAGG--ATGAAGAGTTCTGAGCATGGATTATAATTTCAAACTTTGCGAAACAGACCTTATCTAGGAATCTCTGGCCAGAGAAATGCCTCCCTGCCAACTTTCCTGCCCGAGGCTGTATTTCATGGGTCATT----TAATCTCTGAGAGTAGAGAAGCAGGAATATA

a score=52721
s chr3           105564456 2848 + 160039680 aaggacagagtaatattagaccaaggacctgggcacca-gtggcccagtcaagttgctgtagaaagttaactatcacaTGGCTCCTGTCTGGGTGCATCCCTATATTCTCTTCCCTTTGCCCACAAACTTCTCTCCTAGGGC-TAAGAATGTAGGGAGGGTGCTCAGAGCATCCCAATAGCTCCACTAATGAGGTTGCCCTTTCCTTCAGTTCCCCACATCTGTCGGCTTTAGCAGCCAGCTGTGCAGGTGAAAGACAGTGCGAGTGCTTCTCCCCACTGCTCACCCTGTCCTTTCCCTCCACCAGAGGGAATTGTTGTTACTAAAGGGAATACTGGAGAGAAGGTGGCCATGGGCAGGAGAGTCTGCATTTGACCTCT-GCCTAGTCTTTATGCCTGGCCCAGCCCTAGGCACCCTGGATGG-AGGAGCCTGGAGTGGAAGCAGTCTC-CCACGTCTCATCTCCCCTTTGCACAGCAATAGCCGAACTCCTGCTGACTTGAAGCCTGTGTCTTATTAGGCATAATAAGGCC---ATATTGTGGCTGGCAGGAAGG-AGTGCATTTCACACTCTGAGAAATGGGGTTCAGCAAAGAGACAGGAAGAGGTTCTGAGTACATACTTCTCTGCCTGCTTGTCTGCAGGTTGGTCATGGCAACAAGCCAGGGGAGATAAGTACAGACTTGTCCATCCAGCAAC-CTGGGGTGACACAGCACCGAGGCTCTGATAGAGGTCATTATCCTAGGCATACATtgtccctgtctactaactgcctgaccttgagtgagtgggttaatttttccatgtcaagtcttgtttacttggaaaaaatgaaaata--gtcacacccacccccaaagga-tgttttgtgagaa---gataagttaatatacacg-----------------------------------------ctggcacttATAAGACCCTGCCCCCCTTTT------CTTCCTGAGATTTGGAGAATCAGTTTTGCGCTAGTGGAATATTCATAACAAATGTCAAGTCCTCAGCCAG--CAGCTAAGGATTCATG-GATGTGTGCTCTGGGATGAACTGTCCTCGACAAGAAGGCAAGGACCCCTTTTCTGTGCCTTCCCTACAAACAGGAGGCTGGTATTCAAGTACCATGGGCTTGGTGGTTTGGGAAAACTGTGGGGcagtggttctcaacctttctgatcctgcaaccctttaatagagttcttcatgttgtggtgacccccctcataaaattattttcattgctgctccataactgtaattttgctactattgtgaattgtcat--gtaaacatattggagatagagtacttgccaaaggggttgagacccaggggctgagaatcactgCTCTTCCATCATCACACTTGTTCCTGGATGTTGATAACCAAAGTCTATTGATCCTCAAGGCATAAAACAGAAACTGATCCAGTCCTTTAGCTCCCAAAAACcctgcacctgcacctgcacctgcacctgcacctgcaccATCTCCCTTGGGC--TTCTTCAT-----TGGTTATGAACAGAGTGAAC---------------------------AACCCAGCCT-------------CTCCATTCCCAAGGTCCCACATCTTCTCTCAAGTGTTCACCTGTTAGCATACATAAACTAAGAGTGTTGAAGAAAATGTTTTGGTGGAGTTCTAATCATTCCTGGATGTAGAGGAACTTAAAATTT----AAACCTACTTCTGGATAACTTCACTGTAGATTGATGATACTCAAACAAACGTTTAATATCTGCACTtagtggtatagacctctaatcctagctaatcaggaagttaaggcaggaggatctcagtaaaagggctgactaagctacagggtgatctcaaggtcaacctggacaatatagtaagacatagctcaaaaTTTAAAGAAGGCCATTTCTTACCATGCACAAAACCTCTGTTCAGTCCTTAGTACAAAAGAAAGGAGAAAAAAAAATTTAAGTGCCTCACATAGTCCATGGCACTCAATTGG-----------GAGTTCACT------ATGAGGTTTTCTGTTTGTTTAAAATAAACCAGGATACCTCTTCCTCTGCAATAGAAAGAATTTCAGGGTCAT---TTCTCcgaggatagggtcctgtctaaaacatcactgcatcccc----cagagtatttagcacagcacctagcacagggcagatacgtttctaaatgtgttcaaatgaatgag--------tGGACAAATGGTGGAACTCGGAGGCAGGGTCTCAGTCAGTCCTCTAAGGTGTGGAGCCATTCACATTCCACATGAAAACAGAAAAGATG-GCCCTGGAGCCAGACCTAGCAAGAGGAAGGACCAGGAATGCATCTGGACATCTCA-GAGACTCCCTGTTCCCTCCC-TGTCTAGACAAGGACCACAGCCC--GTCTCTGCTGGGTCCCTTTC-------ACTTCTCTTT------CTCTCCTCCTGCCTCCTGTTT--------TAGG--AGTGTCTGGGCAGAAGGAAGAGAGCAAAATCAGAGACTTTCTCTACTCCCTAGTTGGTCTGaaaatagtaactaattcaaaaatcacttttctttagcctcagaataggtgtcatgagtg-tttagaagagaattgagcctgcatggttttattttgcttgggctagggtttaaaaatccactcacaattactggctttcaagcaactgaaatcagtctaggcagcttggaagaagaaatgttagtcagggtgggggaatttcattagatgtaaaattcttccctgaggaggcctagg---------------------------------------------------------------------------------------aagtgaatgggccgcacacagG-CCAGCTCCAGAAACAGCCACGGAGCAGTAATGAATGTTTCATAAGCACTCGGGAAATTCGTGTGGCTTGGTTGCTTTGGGCCGCTGCCCACCGAAGCCCAT-GGATTTGTCCTGTATCGTTTACCAGCAGGGTTTGGAACTG-ACAATGTGCTATGTTGAAAGGC
s HiC_scaffold_1 116160931 2599 - 233722169 agagagagagagataata-atgaaatatctggGCACCCCATGGGCCAGTCAAACTGACACAgaaaattaaccatcacattgTTTCTGCCTGTGTGCAACTAAA-ATTCTTCACTCTTTACCCTCAA-CCTCTGTTCTGGGATGCAGGAATCTAGGGAGGGTGCTTAAAGCATCCCATTAGCTCCACTAATGAGATTGCCCTTTCTGTTGGCCTCCCACATCTGCCAGCTTTGGCAGCCAGCTGTGCAGGTTAAAGCT--------TGTCTCTTTCGGGTCCTTCCCCTCTGTTTCTCCTCC-TCAGA-------CCTCATACTACAGAGAATGGTGCAGAGAATCTGAGAGTAGGAAGGAGGGTCCACACATGagccctggcctggcctgtgAGTTTG-----GTCCCAGGAACGATGAATGGAAGGAAGCTAGGATGGAAGCAGAGTCTCCATGTCTTGT-----CTTTGCTCAGAGAG---TGAGCTTATGCTGAGTAGAAGCCTGTGACTTATTAGATATAATAAGGCCATAATATTGTGGCTGGCGGGAGGGAAGCACATTTCA-----TGGGAAAT-GCATTCAGCAC--AGACAGGAAGAGGTTTCACATACACGTGTCTCTGCCTGCTCATCAGAAAGTTGGCAATGGCAGTAAGCCA-GAGAGATAAGTGCGGACTTTCCTTTTGAGTAACACAGAGTTGAGACAGTTCTGAGACTCAGATGGAAGCTTTTGTC---------CATTGTCCCTAGC----AGCtacatgaccttgggcaagtaaCTTAA-GTTTCCATGCTGCAGTTTATTCatctgg-aaaaatgaaaataatgttgcA-CCATCTCCATAGGATTGCTTTGTGAGGACTGGATAAAGTAATGTATGTGAAGTGCATGATAAAGTGCCTATATCAAGTAGAGTCCTATAAATGACATTTGTGGTGCCCATCAGCCTTCTTCTTTGGCTTCCTGAGATT----------GTTTTGCATTTGTGGAATATTCATAGCAAATATAAAATCTGAGGCTGGCTCTTCCCAGCACCCACGTGATACAGGCTGTGGGATGAACTTCTATTAACAGGAAAGTGAGGATCTGTTTCCCCCCGCCCCACTGCACATAGGAGGTTGAGGATCAACCACTCTGGGTTTGGTGGGTTTGGAAA----TGAGAC------------------------------------ATAAATTCATTCAT-------TATCACCCC-----------TTTTTCTTG-------ACAACTAAAATGGTGGCTCTG--------TGTCATTGGTGTACAAAATGTGTACAAAGT------------------------GGTGTATAAAAT-----CTGTTCCATCCTCAGA---ATTCCTCACT----------------------TCCTC----------------------CCAG----------CCCCAGGGCTCTGCACCT---------------------------CAGTCTCCCTTGGGCTTTTCTTCCTGGGTATGATCATGACTAAAGTGAAAGGTACCCTCTACTGCCCTCCTGCAAAGAGCTCAGTGTGtcctctctctgcctccatcCCCAGGGGCTCAC-TCTTGTCTCAAGTGTGTGCATAAAGGCACACCTGGACTGAAACTGTTGAGGAAA-----TTGAAGGAGATTCAAGCATTTTGGAGTATAAGCAAATTTGAGACCTCGAGAAACCTCCTCCC-----ACTTCTGTCTCGATCACAGACACTCCA------------------------------------------------------------------------------------------------------------------GATAACTTGTAC--------------------------------------------------------------------------------------------------------GTGCCTAGCATAGTGCCTGACACTTAACAGGCTGCTTGATATGAATTTACTGAATAAGTGAGGTTTT---TTTGTATATAATGGGCCAGGATCCCTCTTTCCCTTGAATAGACAGTATCTATGAGACATTAGTTTCTTGAGGACAGAATTCT----------TCCTTGTATCTCCACTTCAAGGCTTTaagcacaatgcctggcacacag--gatactttttttaatgtcttgaattgaatgagtgagtgaatgaatgaatgatgaagCTCTGAGGCAAGATCCTAAACTGTCCT---AAATCTGGA-------CCATCCCACCTGGAGGAGGAAGGAGCGTGCCCTGGAGACAAGCTTGATA--GAGAAGGACCAGAAA-----ATAGATACATCATGAGGGTCCCAGGTGTCTCTCACTTCTGGGCAGGGGCTGcttctccagctcctcctccttccttttcctgttaAATTTCTCTTTGCCCCACTTCCTCCCAGCCACTTGCCTTCTCTCCCTAGGCAAGAACCCAGATATGAAAAGGAGAACaaaatctgtg-ttttctctactCACTAGTTGGTCATAAAATAGTAGCTAATTCAAAAGTTACTTTCCTTTGGCTTCAGAATAGCTTCTGTGAGTGTTTTTGGAGCAGACCGAATCTGCctagctttattttgtttgggcT-GGCATTAAAAATCCATACACAATTCCTGGGCTCCCACAAGCTGAAGTTAGACTAAGCAGCTTGGAAACAGAGGTGTCAGATGAGGGGTAGGTGCATCATGAGAGTTGAAATTTGT--CGAAAGAAGACtaggacagtggtggtgaacctacagcGCATATGCCAtggcaggctgtttgtatcactgaaaatgCCAAAAGGTTCCCCATCGTTAGTCTACAAGTGAATCAGCCCCACACAGGATCAGGGCCAG-AACAGCCACCTAGCAGCACTGAATATTTCATAAGCACTCAGTAAATCCATGCCATTTGGTTGTTTTGGGCCTCTGCCCACCTAAACCCATGGGGTTTGTCTGGAATCAATTCCAGGTAGTGTTTCAAATTATAGAATGTTCTGTATTTCCAGGC

a score=100220
s chr3           105567297 4144 + 160039680 [encoded data, 4841 characters]
s HiC_scaffold_1 116163901 4598 - 233722169 [encoded data, 4841 characters]

a score=85705
s chr3           105572270 5780 + 160039680 [encoded data, 6374 characters]
s HiC_scaffold_1 116169234 5446 - 233722169 [encoded data, 6374 characters]

a score=18456
s chr3           105580934 2346 + 160039680 ACCTCTGACATCTACCTCACACCTCCTACT-TACCCTCACTTCCTATCCCTGGCCTTTCCAAGGG--AACCTCCACTAACTACCATCTTAGAACTCTGT------CCCATGACA-CCCTGGA---------TGG-------------GACAAAAGCC-----------------------------------AGGATG------------------------------ACACT-------------GGTAGACAGGCACTAGCTGAGATGGGATCGCC----CTTTTCTCTCTGGATTGAAGGGCTCCTCTCAGCTGACACCTAG-------TCGATCCCAGGAGGCTTAATGGAAAGGGTGGTGTTTTAGCAGCTACCTGGGTGACAGAGGAGAGCTGTTTGTCGCTGC-CAAGGATAGATCAGGGCTGGGTGGGGGTGTGGGGGGGTCACCTTCCTGCTGAGGCAGACATCCTTGTGAGCTCATCTTGGGAACTAAACTGGATCTGTCACTGCAATTTCACAGCAGCCACTCAGGGACAGAGAG-CTGAGGAGGGAACTCAGG--CGGGCTGCGTGCATTAGCAG--TGGCGTTTTTTTAAGGCCTGATCCAAGG------AGAGAAGCTGGGCA-CTGTAG-----------------CTTCTTCCCCAAGA----CTCTGTGAGATTGCTTTTGGTGTTTCCATCTCGGGTAGAGCTGTCTGCCCATGGCCCAGTTTTCATTGGCCACATAACAAGTATTAAATC-AGCATCAATGCAGTTAGAAACAGgtcaagcagacctggggacaaatcccagtttttattcattgtgtggccttgtttatattga-----------------tttgttaag----tggcctcattctctcggag----tgtctatttatctgttaaatgga---accattaactggtttgtgaaaattttgtgtgccttaaatgagacaaggagtacaaactctcctttagaatgctgaccctgaacagatgctcagtcaatTTTGTTTT---------GTGagacta-gggcctaaaactc--actatgtagtaag---------gatggccttaatttct-----gatcctcctgactctactttccaagtgctttgatgatacacatgttctgtcatgcccaatttagacaatgctggggcttgaacccag-ggtttcttgtatgctaggtaagtg------tttgaactacc-------aagtgagctttatcAGTAGCATA-------TCACCAAGAATTTTTAT-GTGTCCATCATATCGCAGGCACTGCTCTGATAACCATTGCCTGAGATAGGAGCCCTCGCTTGTTATAGCTCAGCTATGGTCCTATCAGAATAGCACCTGTGAGATTCTCTCTTCACG---------GTTGCCCCT----TCTTGTCCTGGAAAGTACAG-------TCTTCTCAGAGGCACTCCCCATTCCTACCATCCTGGC---CTCACC----------------AATTCCAAACTCTCTTCTCAGCAAGTGGTGTCAAGCTTCAGGCACTGGTGTGACAAGCATGTCATCACAGTGTGTGGAGTGGGGTGGTAGGGGAGTTTAGCAATTGCCACATGACACAGGTTTGGGAAGCCCCCACTTG--TTATTACA------------TGTTTGGAATCCACAG------GCATAAGGGCATCATGGGTAAAGATCTCT----------GAGATTATGGCATGCAGGAGGGTCATGTTCCCCACCACACACCCTCTGAGTCCTGTAAGTTCAGAAGCACCGGGGAGCCTCGGATGGTGTCCAAAGCTGAGAAAGAAGGCAGATGTGGCCAAG-AATGTCCCTGACACTGCTGCCCTCACCTTCTGGG----AATGGATTAATCCCTGTTCTTCC--TGGGCCTGGGGGGGCACAGGA----AGTAACCCCCCTGGG-----AGTGCTCTCTGATGTCACTCTATCCACCCTGTC------AGCATGAGGCCCAATGCATC-CTAGATGACAAAGACCACTCTTCGTGTACAAATGAATACATGGCCAGGTTTTGGTGAGCCAAGGAACTTCTCCCAA-GCAACCAGTGCAGGGTCTCGGGAGAATAACTTGAGGAGTTGAGAAGGAGAACACATGGTCCAATGAGAATGCATTGGAATCATCAGCGTAGAGCATAGCATCATTCCGTCACAAAGCACGTAGTATTGTTCCATGATAGAGCACAGCATCACTCCATGATAGAGCACAGCATCACTCCATCACAGAGCTCAGCACCATTGCATCAGAGAGCATATAGTATTGTCCCATCATAGAGCACAGCATCTCCATCATAGAGTATATAAACAGCATCATACCATCATAGAGCTCAGCACCATTCCATCAGGGGGCATAGCATTAGGGCCT-TAAAGGCCATGCTCAAGAGGAGGGGTGGTTCCTCTTTCTAAAAGCAATAGGAAACAAGAACCATTTTTTTTTCAAGTA-GAGACAGACATTATTAAA---TCTGATTTTCTGAAAGGTCATCTTTAATGCCATGTGTTGAAAGGAC--------AGGAGAAGTAGATTAGAGAGACCAG------CCTGTTATACTGGTGGCCACAGAAGGTGACACCAATAAGGCAAC------------ATCTAAAGGAAATCAGG
s HiC_scaffold_1 116178215 2375 - 233722169 ATCTCTGCCATCTACTGTacttctcctcctctgcctccccttTCTGCCCCTTGGCTTTTCAAGAGGCACCCTCAGCTACCTGCCATCA-AGAGCTGTGGGCATAGCCCATGACAGCCTTGGAAATGAAAAGTGGTGAGATCAACTCTGACAGATTCCTCTCCTGCTAGAAAGACTTTCCTTGGGACTCATGAAGGATGTCCTTATGGGGAGCTAAACCTTCACATGTTACATTCATAATCCAGTAAGATAGACTGAGGCTTGCTAAGATCTAGGCTTCATAATTTCTGCCTGTGGACTGA--GACCTCCCTCAGCTGACCACCAGCTTTTCGTCAACCCAAGGATACTTACTGAGGAGGA-GGTGTTTCCTT-GCTATCTGAATGTGAAAGGAGAGCTTATGGTCATGGTGCAAGGTCAGAATAGGG--------------------GTCACCTCCCTGCTGAG-CAGACATACTCACAGACTCATCCTGGTTACTGACCTGGATCTGTCATTATGATTTCACAGCTA-TGCTCAAGGGTAGATAGACTGAGGA-AGAGCTTGGGAACGTGAGTCATGCATTAGCAGCATGGAG-AGAGTGAAATCCCGAACTGAGGTGGGACAGGAAGGCTGAGGACCTGCAGCCATCCTCCAAATTCCTCTTCTGCCCCCAGAGCTCCTCT------TCTCCAATGGGCTTTCATTCCCAGGTAAACCTGTCAGC----AGCCCAGTTTTCATTTACTACCTAACAAGTGTTAACTTAAGTACCTAGGCCACTAGATGTTGGTCAAATAGACCGAGGGACAAATTCCACCTTTTATTTGTTGGGTGGCATTGGTTACATTCAGTTGTTGCATGATGGCCTTTGTTAAGGTACTGTACTTACTCATTCTGCgcttctgtttccttctctgttAAATAGAGTTAACAATGGCTATTCCTTACAGTTTTTGTGTAGCTTAAATGAaacaatatatgaaaattatcttTTAGATCACTGGAACTAagcagatgctcaataaatgtttttttcctttgggcaTCATAttgcatgcctaaaatcccaaccactcagaaggctgaggtgagaggatctcAACTTTGACTAAGATCCT-----------gttacaagatttttaaaaaatagca-------------------taaaaaggactgggaatgcagCACAGTGGTtgaacacttgcctagcaagtacaacACTCTGGGTTCTCTTCTCAATACTGCAATCGATCAATAAATCAGTTTTTTTCATCAAATGTTTTTTCAGTGCTCATCATTTTCTAGGCACTGTTATAATAGCTACTATTGGTGGTGCCTAATATTATGAGATTTATGTTACCTTTAGCTATATCAGAGCTGTACCAGTAAAGTCATCTTTTTAGGCTACCACTAGTTGTCCTTAGGGTGTTCTCCTGGAGAGTGCAGAGTCTGTTCCCCACACAGCCTTTCCCCACTCTTACCTCCCTAGCATTCTCAGCAGAGGGAAGTAGATGGAGCTCCAGGCTTTCATCTTCCCAAATTGTACTTGGCCCCTGAGACCACTGTGAGGAATAT---ATGACTCTATATG--------------------------ACTGTGAC-TGGCACAGGCTTGGTAAATATCTGCTTGTATCATTTCAGTAGGGTCCAGCTGTCATGGACACATGGGGTGTTGTATTGAGGCCCCATGGCTCTCCCTTTCCACCAAGCAGGGAAGCTGAGACATTCAAGGGTGTAAGAGGCACAAGGATGCACTACCTGATTAAGAAAAAGTTCTACATCCTAGGGCTTCTGGAAAGCAGTTC---------CCAGAAAGTATATATTGCCAAGTAAAATTTCTGGCACTGCTTCCCCAACCCATTGAGCCTCAGTGGCCTTAGC---ATCTCTCCAGTGAGTTGAGCTAGGCTCCAGATGAGAGTAAAACCTCCTGGCCTACAGAGGTTTGTGCAGTCATCCTATCTATCCCTTCTTCTTTTGTGTCACTCccaatctttctctggtttgctGAGGCTTCTTTTCTT----AGATGAGGAAATTCTGAGACCAAGATGATCCA--GAGCATCTCACAAGGCCATTAGTTCAGGGTGTTG------CACTTGGAGGGCTTTAGGAAAAGA------GGTCTG----------------------------------------------------------------------------------------------------------------------CACAGGGGTCAGTAACATGG---------------------GTCCT--------GCCCAGAGTGGCCTCCCAGGAG-------------------CAGCCTGGAGATTAGTATTAGCTCATCA----------------GGCCTGTATAGGTCATTCT--------AGGGAGTTTTGATCTTCCAAAAACAATGGGAACCATGAATCAATTTT-----AAATAGGAAACAGACATGATCAAATTTTCTGCTTTCCTGAAAGGTCA---CTGGCTACTTGTATTGAAAGAACCAGACTTGAgtagaagggagaaagggaaactAGGAGAGTGCGGTTGTGCAGGTGGTCACAGAAGCCTGCGTGGACAAGGTGACATTTGAGCAAAGATCTAAAGGAAATTAGG

a score=31244
s chr3           105585471 1238 + 160039680 ATGCAGAATCATCAAGTCTCCATTTGTTCTTGGCTTCCCACTACATCCCCAGGCTCAGGGATGTACCCAC---------CCCATTACCTCTGGGGCCCTAGAGCCCAGAGTATCTGTAGACTAGGTTAGTGGATGTAGACA--GTATTAG--AGTTGTGTGTCTTCCC----------------------AGCTTATAAACTGTAAAACATTGTACAGATGTTCATTTGCCATTTGAAAGTGAGT---TGAGAAG-TGCCAGCACTCATTCAGTAACAAGGTGGAAGGAGAGAAAATGAACTAAGGACTAGT--GGCCACAAAGCACCTCCAGGGACTACGGACTGCACAGAAAGA--GTGTGTCACTGCT-TATGAATAAACATGAGATGCCCTTGACTTCTAACAGCCTTGATTGTTCTCTGGTTAACAAGGT-AGCTAACAGCTGCTGGTTTCCAAAGGCTGGAGGGGCACTCCCCTCTCTCCCTTCCCTTCTCAGCTGCGTGCTGCAGGGGTGCGGGGCACAGGATACTGCAGGATGGGACA------CCAGGCAGCCCCCAGCTCCTT---CCTCTTCCTTTGGCATCCAGCAGTGTAGTCACTTGAGGCATGGAGCCAG------------------------------TGCCGGAAGCTGAGTCTGGCTGAGGGCTGG-GAGCTTTGCAATTGGCAGGTGGGGCTGGCAGCCTGATTCCTGGAGCAGACCCCAGGCTGGGCAGAGGCTTAACATTCACCATGTGGAGGAGA-TGAGTGGCTGAGGGCGACAACAGGCAGCAATCCTGGGATTGGAGGGAAAGCCAA--CACCCGAAGACCTCCAGCTGCCATTGAGATTCAGGTC-CTATTACAGCTA---TGACATG-GCTCTGCACCATGATGAGAGTTTTCAGGCTTACTGTCCTGTGGGTTCATCACAACATTTCTGTGCTTTCTAGGATGTCAGCAAAGTCA--TCAG----------------CCCAAAAACTGAAGGACTTGACCAAGTTTATGAGAGGTGAAAATCTGAGGTTTCTCAGAGGATCTTGTATGCTCCTTTGTCTGCAACTTTTGGAC-TCTGTTCATACCCCAGTCAATGCCCCCACTGGATCTTCTGTGGGAGACAAACTCCTCTGCTACTTACTGCCTTATTCCCTACCCCAAGGCAGGTACAGAGTAGGGCCATGACCCCAAGGGTTGTGTATCACAGAGGGCTTTCAGATGGGGCTCCC-AGTGGCCCCCATCAAGCTCCACAGCATTCCTCTCCACCCGGCTTCTGGTTGAGTTTTGGCTGGTGGACAAACCCATCAAAAGTCTGGAGGGAG
s HiC_scaffold_1 116182430 1290 - 233722169 acacagaaCAGTGCAAACTCGCCTcctgcctggctgcctgctgcAGTGTTATACCCAGGGCTGTGCTCACAGACTACCTCCCTCTCTCATGGGGGCTGCAGAGCCCAGAACatatataaaatgatacaatgaTCATAGAAACTGTACAGGGCAGCTATGAGACTTCTCCAAAGTAATGGATGTAGAAAGTACTTTATAAACTGTAAGATATTATACAGATGTTCATTTACAATTTGAAAATGAGTCAATGAGAAGGTGCCAGTGCACACCCAGGAACTggatagaaaaacagaaagttaa--aaGGAGCAGCAGGGCCACAAACCACCCCCAGGGACAATGGCCAGCACAGAAAGACAGTGTGTCACTGCTGCATGAATAAACATGAGACGTC-TCCATTCCTAACTGCCTTGACTATGCTCCAGCTAATGAGATGAACAGGCAGCTGCTGGTCTTCTG-GGCAGGAAGggccctcccttctcttcctgcc---------------------------aGGGC-CAGGATCCCTCAGGGTGGGTCCTCTTCTCCCTTTAACCCTCAACCCCTTTTTCCTGCTCTTTTGGCACCCAGAAGTGTAGTCACTTGAGACATGAAGCCAGCCAGTAAGTACTTGTAAGCATAAGCAGACACACCAGAATCTGGAACTGGCTGGATGCTAGTGAGCATGCCTTTTAGCAGATGGGGCAGGCAACTCACTTCCTATAGCTGTCCCCAGGATGGAC-------------CTACCATGTGCAAGAGGCCAAGAGACTGAGGGAGATACCAGACAGCAAGCCCAGGGTTAGAGGGGACCTTAGGTCACCAGGTGACTCCTATCTGC------GACTCAAGTCTCTCTTACTGCAAGCCTACTCTGTACCCTGCACTGTTCTGAGAGCTTTCACTAATGTGCTTCCATGTGCTCTTCACAATAGCCCTGTGTGCTC---AGTGTCAGCGGTATCACTTTAGAGATAGCAATGCATGCCTAAGAGGGTGGGTAATTTGACCAAGGTCACAAGGGGCAAGGTTTCAAGGCTTCTCAGAGAAAGTcctatatttctttatctgaaactTCTGAAAGTCTGCCCACACTCCA-TAtatactttcacaatatctgataaagaaaacaaaaagttccA-TCTTTTCTTATTCATTCCTCATCCCAAGGCAGGGGCACAGTATGGAAGTGACTCCTGTAAGTGC-CCTCAGAGAGAGCTTGTGGAGAAGGTGCCAGAGGAGCCCCCACCAGGGTGAGCACTATCCCTCTCCAGCTGGCTTCTGACTGGG-TTTGGCCAATGGGGAGCCCTGGCAAGA---CGGAGAGAG

a score=95249
s chr3           105588053 5012 + 160039680 [encoded data, 5387 characters]
s HiC_scaffold_1 116185467 4762 - 233722169 [encoded data, 5387 characters]

a score=17822
s chr3           105593497 405 + 160039680 CCTGGGAATGC--CCAGGTGAGAGGGAAGCTGGAATGCTC--TCTCCTCACTCTTCCTCCCCAACTGCTG----CAATTAAGCCCAGGACGGCCATTAGCTAGTGCTGAAGGGCCTGTATTGATTAAGGATAATTATATTTACTCTTTAGCAGTGTGAGGCCAGGCAAGAATATTTTTTGTTAATTTGCTGCTGTTTAGCCTCAGAAACTGGGACTGATATGCCAGTCTCAGCTAGATGGCTCCCTC-------CACAGGCACCTGTATACCTGCATACATATGCACACACTCGCACACACATGCATGTTCCTTATTGCTCAGTTACTAGGAAAGCTCAGGCCAGGCCCTGGCACCCTGGGCAGCTGTTCCTGCAGCTTTTACTCCAGAAGACAACATGGAAATGCTGA----AGCTTTGCCTT
s HiC_scaffold_1 116192012 417 - 233722169 CCTGGAAATTCTCCCCTGCAAGAAGGAATTTGGAGTAGTTAGCTCCCTTGCCTGCCCCCCACAACTGCTGTGAACAATTATGCCCAGGACAGCCATTAGCCACTGCTGAAGGGCTTGTATTGATTAAAGATAATTGTATTTACTCTTTAGCAGTGTGAGGTCAGGTAggaattttttttgttaatttgatGATGTTTAGCCTCAGAAATGGGGACTGATATGCCAACCCCACCtacatcatacacacacacacacacacacacacacacacacacacacacaaacacacacatacacacacacacatctgtatGGTTGCTCAGTTACTATAAATTTTTATGGGAGGT-------CTATGGACTGCCCTTCTTCTAGCTATTACTTCAGAAAAGAACCTGGAAATGTTTAGAAGAGGTTTGCTTT

a score=18428
s chr3           105596800 1013 + 160039680 cttTCCTTTATTTTCAAGCAGGTACTGAAACAGTGCCAGGTGCTGGGCTCAGGCTGAG-------ATGTAAAG-----TACCCTGGGTGTGGGG------AGGGAAACCAAATGGGCAAACACGGGCATCTTACATGCTGC----TCGAGAGCTCAAG---------CTCAAACCTC-------------------TGCTTATCACA-AGGGCAAAACTCGAGTCCCTAAGATGCTGCCTCCCCAGCTGTAAAAATGAAAGTGATCGGAATGGCTCCCTGGCAGAACTGCTGGGATGGGTAGT-----TCATGTGTCACAGGCAAGACCTGGCATGTAGCAAGTGAGTGTTCAAAATGAAAACTAGCAGTGACTGC--AATGCACCGTGACTGCACTCCTGGAGATGCTGTGTACACTAGCTTAGGCTAACGTCTTGGGAACTT-TGAAAGCGAAGGCAGACAAGAAG-----GAGCTACCTAGTATGCTGAGATCCA---GCCCCAGCAGTCTGGGACCGAGGACCTTGTACTTG-ATGCCATTGCCAGTCTGTTCCCAGCTTCAGCTCAGTACACCATGGAGTAGTATTGGCTACCTTTTTTTGGTTTTTTTGTTTTTTGTTTTGGTACTGACAGCATAGAGCACCATGGGGTTAGAGAGAAAATGTACCTTATGTAATCTGGGG--------------------AAAACTCCTAAAAGAGAATAAATAGGCTTGTTCTAGAAGTAGGAACTGTTTGTTCAGAAGCCCAGGGGTGAAAGACCACAGTATGTTAGGAGGACAGTGAATATTTC--AATAAGGGCATGGTAGGTAAATGGGTTCtaccctagcctgcctggaactgtcctggtttatcatctcttggtccagcttaattattacagcttgtcccctgttcagtaccaaacaggcccagttaggatgataaattatatgctcaccataATTCTA-TATAGTGGTAGGAAACAGGAAAAAAAGAAAGAAAGAAGCAAGAAATGAAGCCAGAGAACATGGTTTTACAA--AATGGGCTTTGCTGCCACAGATAAAGGCTGAATTTATCCTAAGGAGCATGGGGACCCAG
s HiC_scaffold_1 116192616 1023 - 233722169 ctttctttcattctgtgagaGGTAGCTGGACTGGGCCAGACACGGGGCTCAGGCAGAGGACACAGAAGCAAAAGGTGCCATCTCTGCCGTCGGGCAGCTCAAAGAGACCAAGTAGGAGAACAAG----------ATGCCACAGTGTCGTGGGTTCAGGGGGCTTGTTTTCAGATGTGAGGCCAGCATCAGTAGTGGTGCTTATTATGCAGAGCAGG--TagcctctctgagcttcagtttccccCGTTGTGAAAATGATAATACT---------TACTTCACAGAACTATTATGAACCATGATATGAATCATGTATGTGAGGTA----CTCACAtgtagtaagtg------ctcagtaaacaATAATAGTAAATCCTTAATAAATGTTAACTG-------GCAGGTGTCATGTAGACCCGCTCATATAGTGTTCACAAGAATGTGTACAGGGGAAGGGAGACATAAGGTGGGTGAGTAGCATAAAAAGTTGAGACACACAATTCCACATGAACTGATTCCATTGCCCTTATGCATATCTGCTATGGTTGCTTTGTCCTCCACCTCAACCTACCCCACCACT-AGTCATGTTGGCTGCCATTCTCT-----------------TAGCAGGAGTGGCAGCATAGTGT--CATGAGGGTAGAGAGGAGAGGTGTCTTATATAACCCAGGACAAGTGATATCAGGGATATCAGAgctcctgaaaaagaaaaaatgggctTTTTCTGGCAGAGTGAACTGTGTATTCAGAGGCCCATGGGTGAAAGAGCATAGCATATTTGGAGGACAGTGAATATTTCTACATAAGGGGATGGTGGGTAGACTGA-------CTTGTTTGTCTGGGACTTTCCTGATTT-TTGCCTAGTGGCCCAGCTTAATTAT---AAattgttccttgttcactctcagACAATTCCAGTTAGTGTGATAAATTACATGGTCACTGTAATTTTATTGTGCTGGCAGGTAACTGGGAA-------------AGGCAAGGAATGAGGGCAGGGAA-ATGGGGGGAAAATCCGTGAGCCTTTCTAAACCACCTAAAGACTCTCTTCATCCTGAAGGATGTGGGGGCCTAG

a score=50010
s chr3           105600356 2797 + 160039680 AATCTATTGATTAAACTTTACTTGGCCCTTTCAATGTATTCTTCCTTACTTCCAAGTCTGACACTGTTGGCTTCATCACATAACACTAAAATGCAGAGGATGGGGCCCTTTCTGGCTCCTACTGCAAAACAAAACAGAACTCAGGCAAGGAGGACCATAGCTTGTGTGATCCCAGAGGCCATCCAGGTTCCCTCAAGGGAGCAAAAACAGACGGGCTTTATTTTTAGATTCTCTATGGGCCCCTGAGCCCTGTCCCATTTTCTGAAAGC--AGAGCTTGGGGGCCAAGCCATCTGGCCCT---------ACTGCCAGA--------TCTCTCACCACCCATGATAAAATGCCAGGCAAATGTGGCCTCCACCATGTCCATGTTTTCCAG-CCGGAACATCCACGTGGCAGGGCCTGTAGTGGCACTGGAATCTATCCGAATCAAGCCATGATAATGTCTGTGCTCAGGACTTTTGCTGGCT--GGAGTTCCAAGGACTTAGCTGT-AGTAGCCCAAACCCTGAGC-TTCTTCTGACTCCACAG-CCCCCCTCTGACCCTACCCTGCACCATCCCTGAGCTCCATTTGGGCTTTCCCACATTTCTGAGATCAACTCTACAGCTCAAAAGGGTAAACAGCAATGAAAGCAATATAGAATGTCCCAGGTGAACCCAATCTAGACGGTACGATACAATGCATCAGCCATCCACCTGCGCCT------------------GTGAGATTACC-----GATACTAGAGAAGAGCGTGGCCTCGTCTTTGTTCTCAAGATGCTCTGCTTGCCACTGTTGTCTGTTTCACGACTCATCCCAAGGA-CTGCCAAGAATCAAGGACC-AACTCAGAGCAAGCAGTCAGTGGGG-TCAGAGAGCTGGAGTTTTTCCTTCCTGAATGGGAACTCCAAACTGGCAGTGTCTCCCTGCTCCTGCTCCTCTCTGGCAGCGCCTCTTGATTCATCCTACACTTGCCACCTACATGAAGCTGACCTGGGAGGGAATCTGACAAGCAC-CATCATTCTGTAAATGGAAGTGGGTACCACTCGCCTTAGCAGAGAGCTGCTGCAGTCACTGGCTGCTTCATGGAACCCCGGTGGC------------TCCATCTCTCCTGAGCATCATTTTCTCCTTTTCTT---------------ATTGGTAACCTAGGCTTAGCCTGAATCTTAACT----TGGGTCTATTGCAGCCTGAATGCCTTTAACTGGCTTTTCCCCCTATGCTCAGGACCTTTCTATCCGTCTCAGAGAACAGTGGCA-GTGGTTTTCCATTCTTAGACATTCTCCAACATTTATCAACAGTTATTCCTTCTCCTGTGACT------ATATGGACACTAACATGGAGAAACTGGCTGAAAGA----------------------------GCCACCCAGACTGGCTGGAGACTAGACAGACAAGGTCTA-TTAGAGCCCAGTTATAGTCCGCCCTCCCTGTTGGCACTCCTGCCAGGCATCCTATGAGTCCCGTGGGCCCCATGAATACCCAGATTATCAAGATTAGCCCTGGAACCAGAACACCTGGG-CTCTTCCTTGCCAGTATTTGGGACCCAGACTGATGCCCATATGGCCTCTCAGATGCTCTGCTTCCCAGCTGCCCTCCTTCTCCCCCAAGATTTGTCTCTGCACCACAACATGCCAGGTGTGCTTTGGCCTGAAGTCAGAGACTGAGCATCAGTGACTGCAGGAAGTG----------ATGA--GCTCTCCCTGCACCTCCCGAGACAATGCTCTTAGGTTCGCTGGACAAAGCCTCCTGGTACTCTGACTTCCTTAGGATATGCTTCCAGATTCGTTTTTTCTCTCCTGCAGAGCTCTAATCAAGCAGACAGTGAAATAAGACTTTAGAATGAAAGTCAAAAGAGAGAATAAAATGCCCAGAAAAGGGCCAGGGGCCCCTGGAGG-AAGCAGACAGGAACAGAGCAAGGCAG-----------GAATATGCCCTTAGGTGGTGACCTCACTGC--AGTTGACACTTT--------------TTTTCATTTATTCTTCACACCAACACC------TAGGTATTGTTGTCTTCACAGTACAG-------CTCTTT----TCTAGCTTGTCCAGAGCTTCATGGAGTCTGA-TTCAACAGAAAGAACTTTATTCTAAAGATTAAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTGGGGGATTCCATGAgaggccaggagagggcactgtatcatctggagctggtgttacaggagctcatgagccacctggtgtgggtgctgagaaccaagcttgtgtcctctgaaagaacagcgagtgctcttagctactgagccatgtttccagccccCAGAAAGGACGTGCTAGAAGATATGTTAGGGAAGGTACAGACAGTAGCAGATGAAGAATCGGGAGAAGTTGCCTTCTCTGACATCTGTCTACCTACTCATAATGAAAGGGGAGCCAAGAGGACTTGCAACTTCCTG-GGGTCCTCCTGCTGTTGGATGGAACTGAGATACCTGGAGTATAGAGTATGGAAA---TCCCTGCCACACAGGAAGAGAC-----CATCCCTCCAGAAAGCAGGACATGTGGTTTGTGAGCCTGGGGGCCTGGGAGTGGGTTACCCAGAGGAGAGGGCCTGAGAGAAGTGTGTTGCACACTGCTGCCAGAGCAGAG-CTGGGAGCAACACC-CAGCTGCAGAGTGGCAGGGACAAG--GAGCAGGGCTAGGGCCTCTTCCTAATTAGAAGCCTGCTCATAGGAGActgctaaaagcagaagaactaatgaatttttaacgtgatccactaataatcttttcccttgaaaggtagaccagacaaatagg---accatgtctagacttcagcgagcttcacaagaa--gaactgttgat---aaGAATGTTGGCTCTCTCactgcagcggcac
s HiC_scaffold_1 116196124 2613 - 233722169 AATTTCTTAACTGGGCTAATTTTGTCACTTTCACCatctttttccttatttcccAGCCTGGCACTAATGGTCTCATCAGAGAACCCTGAAATGAGGAAACAAGGTGCCTTACTGGCTCCCAC-----GTCAAGATGTCCACCAGGCAAGGAGTACCACAGTTCATCTATTCCCTCAGGC--------TCCCATCAAGGGAGCAGAAAAAGACAGGCATTATTTTTAGCTCCCCTGTAGCCCCCTGAGCCCTGTACCACTTTATAAAAACAGAGAGTTTAGGGCCCACACCATCTGGCCCTAGTTGAGAGACTGACAGCCTTTGCCTTCTCTCACCG-TCATAAAGAAAAGCCAGGGAGATGCAACCTCT-TCACGTCCACATTTTTCAGACCAAGAAATCCATCTGT--GATTCTCCAGTGGGATTTGAGTCTACTGGGCCCTCAC--TAATAGT-TCTATGCCCAGGACTCCATCTGTGCAAAGAGCCCCAAAGACCTTGCTATGAGACTCCCAGACTCCAAGTACTCTTCTGACTTCACAGTCCCTCCTCTGCTCCCAGCTAGCACT-TTTATGGGCTCAACTTGATCTCCCCTATTATTTT-----------------TCAGAGGGagga----caatgaaaacaataaagaGGGTCCCAGGTGGGCTCAGCTCAGACAACCCAAGACAGagcatcattcattcattcattcattcattcattcagtaaaggGCAGGACTTTTCTGGGGATGCCAGAAACAGTCATAACCTTATTTTCACCCTCTAGATACAGTGTATACTGTTGTTCTCTGTCTCATCACTGATTACAGGGATTTACCATGATCCAAAGGCCAAAAGCAGAGGAGGCAGAGAATGAGACTGAGTAAGCTGGCCTTCATTCTTCTTCAGCCCCACCCCTGGCCTTATAGTTTCTC----CTACTCTCTCTCCCTGTCAGTACCTCTTGGTTCATCCTGTTCTCAGTTCATAAGTGCAACTGAACCTAGAGGGCACCTGACATACAAGCATTGTCCTGCAGATGGAAATGGGTACTGCTCACCTTAGCAGAGGGCCACGGCATTAACTGGCTGCTCTGTGGAGCCCCAGTAGTCATTATTCAGAGTCAGACCCTTCTTGG-ATCATTTCCTGCCCCATTTCAGGGCCAGAATGAAATCTGAAATCTTTTTCCAGTCCT--TCCAGACTCCACTAGGTCTTTGGCAACCTGGATGCCGCTCAACGGCACTACCGTC--TGGTCAGAGCCTGGCAGGGCCTCTCCCCGGACAGTGTCACCTGATTTCCCTCTCTTGGG----CCACAGTATCAATTGAGGGTACCTCCTGCCCTTGGGAGTCTCCTCATAAGAGCACTAAATTAGAGCACCTGGATTATAGGCTGCGTAGTAGTCATTTGCACAGCATGTGTCCCCTGGATTAGGTGGACAGTTGGCAGCTGCAGTGTATTTGGAACCTAGTGCTGATTCACTCCCCCTG------------------------TGAGTCCTGTGTCGCCTGTGAATGACTGCCTTATCAGGAGCAGTCTTGAATCCAGAACACCTGAGCCCCTTCCTGGCCAGCATTTGAAACCCGGATTAATGCCCATATGGCCTCTCGGGtgctttgcttcccagctgccccGCTTCTCCAC---AGGTTGTCTCCATGTTACAA-AGCCCCCATGTTCCCTGGCCTGAGG-CAGGTATTAAGAATCAAAAAATGTTGGAAATGGTCTATCTGAATGAATACTACTCCCCTAACTCCTAGGATTATCTTCCCAGGGCACTTAAGTATGGTCTACTGCCATCTTGACCATTTTAGGACATATTTCTaagttc--tttttctctcctaAAATGGCCCAA-AAAGCTGACACTGAAATAAGACTTCA-AGTAAAAGTAAGCAGAG-GGGTAAAATGCCCTGAAAAAGCCCAAGAG-----GAAGACAAGCATGGCCGAACAG-GAAAGGCAGACAGCTGATGAGCATGTGCCTTTACACGGCAGGCTCACTCCAAAGCTGGCACTTTAGCTACTTACCATGATTTCATCTATTCTTCACACTAACGTCATGAGATGAATATCATTATCCCTGCGATACAGATGACAACACATCAGCATTGAACTTGCCCAAAGATGCA---AGACTAAGTTGAACACA------TCAATTCTAGAGA-------------------------------------------------------------------------------------------------------------------------------------AAGAAC----------TTTTCTAGATGA-----------------------------------AGTACCCAGGAAGCCTG----------------AGGGA----------GGCAGCAGGTAAAGAGTCAGAAACCGTGAAGCCCTCTGGTACCTCCTTCCTAACAGACAGGAGGAAAGGAGTTA-----ACTTGTAAA--CCTGTGGGTTCTCTTGCC--------------------------TGTTAAGTAAGGGAAGGCTCATTGTCACACAGGAAGAGATAAACACTGCACTCCAGGAAGCTGTGTGTGTAG-------------------------------CCcaggtgaaagaattt----gtacTATGCTGCAAACTGCTTGCAAGTTGGAACCCAGGAGAGACACCTCAGTGGCA------CAGGACCAAATCGAATAGTAATGGGGCCTCTGACTAATTAGACAACCGCAGAGATCATCCTGCTAAAAACAGCAGAGCTGATAAATTTTTTACTTGATCCACtaataat-ttttccctttaaaggtAGAACAGACAAATAGGGGAACTGAGTCTAGACTTCACTGTGATCCACAGAAAATGACTTCTTAGTATGAAGAATACTGGTGCCCCAAGGGCAGAGACAC

a score=30700
s chr3           105603666 2636 + 160039680 AGGGACGATCATGTGACCTTGGCATGGCCAATAATAAGGGCAGGTTACACCAAGTATCTTCAGACATGAGCCAGAATCCACAGGAAGGGA-GACCTGAGGGATGTAGTGCAGCAGGAAGT--GGTCCAGTCCCAGGGACCAGAGTGAGCAGAGCTCAGGTGGATGAGAGGATAAAG-AATGAGATGTA-----CACAGTCACAA------CTAGTTGGAGGAAAAGACA----TCAGAAGAACTGACACACATTTTTATATGGGGCAA-GGAGAGTGGATGGTAGGCTACTTTGAGAATCTGATAAAAAAAAAATCTGTAGTCCCTTTCTTCCCTAATGGCACACATACCACACCTGATAGCTGGGCAACGTTTTCTGTATGGTTTTAGGAAATGTTGAAGGATCCTATGTTAAGATCTACTATAgagttggaattgtcactccatggcagaaagcttactgggcatgcacaagtccctgcgtttgaacctcagtataagctagtaaatgaatgagtaagtgagtaagtaagaaaatTCCTAATACAAAAGAACTGATGAAGGCATAGATAATGCCTCTAGGAGTTCCTGCATAGAGAGAGAACAAGCCATGTCAAGAAGCAGGAAGATGCTATACTGTATAAATACTGTCTTGGTGGGGGATGCCAAAGCCCAATGATGGTTTGCAtccaaaatgtgtattctaaaacttgatccccagtgctgt-----taagaggtgtggcctgctgtatacctataatctttgcacttgggagggtgaagcaggaggac------------------------------taaaagtt----------------------------caaagccagtcaggactatatagcaaca----ggcaccaagtctgccattactttgatcttggatctcctggtctctataa--atgtaatataaa-----atgttttttaataagcctcttagtttaaggcgttttgttatagaagcccaaatagacCCACATATGTAAAATAAAATATCACTTTTTT---------TCTGGG----AAAAGGACACTTTTATATTTCTCTATTTACTTTTAGttgttaaggcagggtcttgctgtat-----agcccgactggtctaaaatttgtaatctgcctgtctcagtctctcaagtgctaagaatacaggtatgtgccactctgcccTGATATTTCTGAAGTTATATTGCTAAGAAACCCACCAGATTTGaatctcgccaagcttcagtttccttgcctgtaaaatggggaggacatctataataactggttattattaaaaac--aatgaaattcttcatgtcaagtgctcagcctggtgtctggcacacTTACTTCAACATGTTTTCTCTATCATTATTAAGATTATTATCA---TTTCCTGCAGGTAATGCCCTCACTCTCCTCTGCTGACTGCTAAACCCTTAAATAAAGGTTAGCCTTTGTGTGGTTTGTTATTTTTAAGTAATGCCTCAAGAAGGAAAAATGAAAAAGGCAAAGGTCTGACTGCCTCCTTGGAGATGGTGACGTAACACTAGCTCTCTGCAAAAGAAGGAAT-AAAGGAAGTGAG------GATGGTGCT--GAGGGCAGGGGAGGA--TCAGCGCGCCTACATCTGGGAGGAGAACTGCATCCCTAGAGAAGAGT-AGGGACACTGAGATGCCTGCCCCTGGttttgcttctgtcttcctcactgaagagaacaagctttaatctgACCTGTCCGGAAGTACAGGTTTGTCTGTCATCCATGGatgagctcaagactccagatccaggtgttcaatgtcttgaaaccaaaaggccttcaaggtgagccagctaaaaacagtgctgctcattgctgagacgctgtgaaga--gcagagaagatgc-----ctggagg-acgatcctg----------aagagtctacactgaccatgctgatg--tcaaactgacaaaactctaaaaataagtgggatagtaatatacagtga---ctttagagagaaaagccatgatgcccagaggccagtagaagatcac----taaataaggaagatttgaaatgaccccctcccttttttagtagagttTTTTATTTTTTTTCTAAAGTGTCAAGAAAGTACTATTGGTGTGGTACTGGGAAGAAAAAAGGTGGAGAGCTATGACTGAGATGTAAACTGAATAAAAGAAAAGAAGAAGGAAAAAATATCATTGGCATATAGTTTCGTTTCAAGA----AAATAATGATGTCATTCCTTATTGCCTACTAGATAAAAAGGAGGGAAGTGCTATGGGCAAGAATCAGACTGT---TACAGTAATGTCTCCCCCGCCCCACCCCAAACTTCAGCTGTTCTCCCCGAGGGTCAAGAGGATCTTGGCACTCAGACTTGGCCAaatggctagacgccataccaagaaaatctctgagcaggtggcgtgtgcacaggtctccaggtttgatttt-ctcagtgtgtttataaatgacacacttcaagacagcag-tgtgcctgtggacacagtccccaaatacctgggaaagttaaattactgcatgggaacagtaccagggtttcaacaggac-ccagcacctgaaatgacaggcTCAGGCTGCGTTATACGTAGTAGAAATGGGCAGAATAGCAGTCTCTAATGA---TATGTAGAGACTCCT----AAGGGGCTGAGCACTAGCCTCATTCCCTGAGTATGTGCTGCTCCTGGCCACACTCCTTCCACTTtagctccacagtggagaaa
s HiC_scaffold_1 116198803 2296 - 233722169 AGGAGGAGCCATGTCACGTTGGTGAGACTGA--GCCAGGGGAGGTGTTTCTGA-CATCTTGAGACATGAGCCCTGGATCTTACAAAGGGATAACCTGGAGAGTGCTGCAAAGCAGACTATCCTGTCCTGTACATAGGCCCACAG-AAATGCAGTTTTGGAGG-TAAGAGAGCACAGCAATGAAATGTCTATTTCACAGCCACAAACTGTCCCTAttggagggaaagagaaatgtTGAAAGAAATGACATAAATGTTTGAATTCAGAAGTGGGGAGCGGATAATAAACCAATTTAAGAATCTAATGAAAACTAGAT------------TGTCCCagaaaaaaaagtacacaatATGT------------ATGTTTTGTGTATAATTTTAGA----------------------------------------GGGATTG------------------------------------------------------------------------------GTAATAGTGTA-------------TTAATATAAAGGGACTACTGAAATC-TAAAGAATATTTCTAGGAGTTCATGCATAGAAAGAGTATAGGGCCTATCA-GAGACAGGAAGGAACCCAAACAGATTAGAAGTGAC-----AGAGGGTATCA---CCTTCTGCAAGTGTCCCTCCAAAAT-TACATGCTAAAACTTTGTCCCAGATGCTGTAATATTAGGAGGTGGG------------------ATCTTAAGAGATGACAGGGTTATGAGGGCTGACCCTTGAAAATGGGATTAatgacctaatttttaaaaaatgcccaaTGGCCCTGCTATTATGTGAGGGCACAGCAAGAAAACATTGTCTGTGAACAATGAGGCAACAAATCTGCCAGAACTCTGATCTTGAATTTGCCAGCCCCCATAACAacgagaaataaatatttattattgtttataagCCACTCAGTTGGTAGTGTTT-GTAATAGAAGCCCAAATAGACTCAGACA-ATAGAataaa---ccatttttttaaaaatgacttcagACAACAAAAAGGCACCTGTAT-----TTCAGtagctgttatttttaagagca---------tgTATTCAGAAATCAGACTCATCTAG--TTTGGA---------TCTCAGCTT-------------------------TGCCACTTGAAC------------AAGCT-----------------------TTTTAACCTCATCAAGCCT--ATTTCCCtacctataaaatgggaatgataTCTATTCCCAAAGGGTTTctgtaaaaactaaacaaaataattcatgcTAAGTGCTTGGTCTGGAGCCTGGCACTTTTGCTTCAATACATTTTAGCCaacattattgttatttttatcactattttctGCTTGTAATGCTCTTATTCTCCTCTTCTGACTGTCAACCCCTTAAATAACATTCAGCTTTTagtggttttgttatttttaagtaatgtctaaagcagg-aaaatgaaaaaggttAAGGGCT-----TCTCCTTAAGGAAGATGATGTCATGTTAGTTTTGttcaaaagaaatatcaaaaggGAGTGAGACTTAAGATAGTGCTTGAAGGGCAGGGCAAGAATGCAAGAATGCTCCACTTGCATGGAGAATTTTGGCTTTGGAgagaactgaagaaaacaaaaccacctGCCTTGTGTGCTGGTTCCATCTTCTTCACCAAAGGGAGCAACTTTTGATCTGA----TGCATAAATGAATATCTGT--------TATATATAAAGTCA--ACTCCAGACATAGAGAGTTGATGTCT-------GAAAGAACT---------GATGGCT-GAAACATAGCTGGTCATTGCTGAGAAACCATGAGGACTACAGGAGAGGTGCAACAACTGGAAATGTCATCCTTTTCCAAAAGCAAGGACCTA----GAAGTTGTGGGTGGATCAGACCAATGGAATTCTTAAAAGATAAGAGTAAGAAATAGAATATGAATGCTTAGAAGATAAATA----GGTAACTGGGAGCTAGCAGAGGATCACAAAGTAAATCATGCAAGTTTGAAAGGATTCTCT---TTTCTTGG-----------GTTATTTTTCTATAATGTCA--------------------------------------------------------------------------------------AAGGAAGATAATTGGTGTACAGTttgatttcagaaaaacaaataatgaaatcattCCTTATCACAGTGTAGGTACAATGGAAAAATGGCAtccagaaaacagtaaaattgtAGCTTCAGTAATG------------CTCCTCAAAGTGCCGTTGTTCTC------------------------------AGTTG---------------------TCAAGAGAATCTCTTAATGGGAAATATATACACAAGGCCTTGTGTTTTACTTCGTTCAGTGTATTTGTAAGtgacaaagtaaaagaaaaaagccatGCTTG----CATAGATACCCCATACCTGGAAAAGTTAAATTACTAGATAGATGCAATA----------AACAGGTCTCCACCTCCTGAAA-GATGGGATTCTGCTGAGTGAAATGTGATGGAGACACGCAGGTG---ACTCCCAAGTGACTTTATGTAGACACCTCCCTCAAGGAGGCAGGGCACAA--TTCATAGCTTAAGTGCAGGCTGCACCCAGAGACATCCATCCATCtgtgg----aaagggaagaaa

a score=20721
s chr3           105608692 849 + 160039680 GCATGGCAGAGAAGACAAGTGAGCCAGCCCTTCAGAACTCCTGCTCAGCTGCCATGGGCTTTGGATAATGCAAAGTCT-TTGTTTTGTGTCCTTGATGATGCATATGAACCTCAGGGTCATTCAGAGCCTAAAGTTCCTGTGTTAGGCTAAAATCTCCAGTCCCCAGCCATTGCTAAAGGATAGAGCCACATGCCTTTGGAGGAAAAAAAACCTAACAGCTATGTATTCAAAAA-TTTAC------AGTCTGGAGTTACAATAGACAGTGACAGATGGATCTGGGTTTACATAAAATGACACAGACACTGATTTTCTGAGTATTTGTTGGAAAAATCAACAACAACTAAAATGGATCCCTCGCCCACTCACACACACAACCATTCCACACAAACCCACTCACAGGAACAGCCATTCCACACAGCAGAGGATCCCAGCACCAGCCCATACAGAGATTTGAAAGCTATTTCC--AGGTCTGGGGTTCA-TCTTATTAGGCGTGGCCCCTTTCCCTTCTGGCACAACCCTGTTGGCACAACTTCCGTCCCTG------------GGGGATGGTTAGCCT--------TTGGAGAAACAGCTCTCAGCTTGAGTTTCACATGGACCAAACATCCTCTGAACTTCACAG---------TACTGCCTGT-CCTTCCAGGC---------CCACCTGAGCCCAGTAGGTACAAAGAGGTTGGCTAATCTGTACTCAGAATACCCCTCCCCAatttttagaaggatattgtcagactgaagaatatccacagatgtgtaagcaggCTACTTGGAGCCTACATTGTGCCCTGCTGGGAAATTGGAAGAGTGGTCTCT------------TCACATGCAGGGTTGCCATGTAAAAGATAGAATAAAACTCtac-tgcattct
s HiC_scaffold_1 116204598 831 - 233722169 GCACAGTGACAGAGACATTCACGTTGACCCTGTGGAACTCTTGTCAACTTGTCACATATCTTGAATGATTCAAAGTCTCTTGTCCAGCATCC------AGCCATGTAAATGTCAACATCATTGAGAGCCTAAAGCCAC-ACATTATGCCAAAATGTCCATATCCCAGAGATCTC-AAAGGATGTTGCCACATACCTTTGCAGAGTAAAA----CAACAACAGTGTATTCAAAAAATTTACTTGTAGAGTCTGGAGGTACAATAGACGGTAACAGATGGATCTGGAGTTACATAAAATG--ACAGACAATGATTTTCAGAGGATGTGTGG---ATTTAAAAAGCAACTAAAATGGATCTCCTACTTA---------------------------------------GCCAACCATCCCAAGTAGCAGTGGCTCCCAGTAGAAGCCAGCACAGAGATCTGAATGCAGTTTCCAAAGGTCAGGGTTAAACTCTTATTAGGT-TTGCTCAATTCCCTCCAGAT---CCCCTGCCAGCATAGTCTCTTTCTCTGCATGTTGCTTTAGAGGATAATCAGCCTAGACTGTCTCGGAGAAAAAGCTCTCAGCTTAACTCTTAGGTAGACCAAGTACCTCC---ATTCCACAGGGTCTGGGATGCTACTAGTGCCCTCTAGGCAGTCAGAGTCCATCCA---CCAGTGGATGCAGGTGGGTTTGTTAATCTGCCCTCAGGACAGGACTCCACAGTTT--------------GCAAACTTAAGCAGGTTCACAGATGAACAGTCTGGTTTGTGGGAACA-AGTCTGTGTTCTGCTAGGAAAGTGGAGGAGCAGCTTCTTGTTTTCCTTAATTGTCTGCAAGGCTGTCATGTTAAGGATATTGTAAACTTTTCTGTGTATTCT

a score=55801
s chr3           105610030 3680 + 160039680 AAACTCCCCTGTATATCCTCAGAAAGCTCTCTTACAGTTAGAAGCCAGGGAACATGGGCACACAAATACTCAAAAGGTACTTTTGCGTATTTCAGTTCTGCGGCAGA--TTCTCA-GTTGGTGTCTTAGATAAGCTGATTGCATAGGAAAGTAATTACCTCAGCTCTTCATTGTTGCAAGGTTCAGAGAGTGCCCTGCAACTGTGCTTGCTTTTGGGAGCAGGGGTGGGGATAGGAGAGCTCCCCTTTGGGTGGAGAATGGAAC-GGGAGGTCTCAAAGTTTCTTTCTAAACTTTAGATGATATATACCCGTGTTCTA--TAAGTAGAGACAGCAGAGTGTCAGGATTCTAGTTAAATCAGAAAGGACTAATATGAGTATGAGCAACTGGGAGA-ACTCCATAAGGTTCAGATGTCTGAGTCTGGGGTTTTCAGGCTGTT--------TTTCTTAAG-TAAATACAAGTCTGAGCAAAAGGGGTGAA---AAGCGTGAGTCCCA-----ACCCAGACTTAGCTTCTACTTTCATGATTAAAAACCTCTT-CCCATTATAGAAAGGTAGTTGAAATCTCAGTGGGCAG-GTGGCC-CTCTCTCTTGAGAAGCCTTCCACCTATGTC-----------------------TTGGGTTTGTACTGTCCTT---TTCCTAAGTGCCTCTCTCACCCTAGTGCTTGTGCTTAAATAAGTGTTTTTAAAAATGG-------CCTTg-ggctggtg------agatggctcagtgggtaagag---------cacccgactgctcttccaaaggtccgga----gttca--aaccccagcaaccacatggtggctca-taaccatccgtaacaaga----tctgactgcctcttctggagtgtctgaagacagctacagtgtacttacatataataaataaataaatctaaaaaaaaaaaTGGCCTTT------AATAAATTCCATCTTTGCTTTAAAAGAA----------------ATAATCGCA-ATGCGTGTCAGTAGC------TACTTCATTCC----CTCTATCCTCTTTTTCCAGCC-------TTAAGCCGATCATACTCATAGGAAC-TGGGGGAGTAGATGGGTGTCCAGAC------------------------TTCCATAGGCCAAATCCTTGATATCATCCCATCCAAAGCTACAGGGTAAGCAGATAGG------TCCATCTCTGTGGCTATGTGAAA--------AGCCCTCCCTCTCAGCTTAC--------------TGCCTGGATGGATAACTGAACTTTCT------------------GCTCTCCATTT--CATCCTGACCCTGGACGATTCACTTTCCTCCTAAAATAATACCTGTTCGATGCCACTTCCTGGAGATTTTTA------TTTGCAATCTGTTTAGTTTGGTGATTTTATTCTATCTGATGATTTTCGGTCACCACCAACCATTGCCATCTTTCTCTAATACCAATCTGCATACATACATGTTAGCTCTGTCGTTAGTAAGATACAACTTCAAGAAAGAGAGTctggagagatggttcagctgttaagagcactggctgctcttccagaggacctgagttcaattcccagtaccaataaggcagctaaaactcatctgtgactgcagtcccaggggattaaacatctttttctagcgtcctgggcaccaagcatacacgtgatgcacagacatatatgtgggcaaaacattcttacacataaaataaaattaaaAAAAAAGAAAGGAACTAAGAAAAGAAGTGATATTAAAAGACCCTATTTTAGACTTCTTGGCCTTCATGTACAAACAGCAGAAGGCAGCATAATTGTGCCAGAACTCAGCACTTCTGTGATTTGGACAGCGCTCCCCTTAATTTGTTCTTCTACTCATCCAACAAATTCAGACTGGCTTGCTGCTCTTGCCCTGACCTACCTGGCTTTCTTATTTTGTGCTTGATTCCTAAGGAAccaaa-ccttgttaccagcttgaagtacaatttcaagcaagtcacctttcctttctggtcaccagcttccttatcACCGAGCTTTTAACTGCCCCATGGGCCACGTCAGGAAAGACCATTCATTAAGGATACACTAGATGCCGACAAAGCAGGTGCAAGGGTTCCAAGCCGCTTGCAAGCCAGGGAGAGGTCTGCACTAATCATCCCACATTCTTAAAAGGCTTCCAGCATCTGTCAAGATCCAAGTGTGG-CTGGGCACTATAATTGGGCCCTTAGTATCTCCCGCAAGTTTTCTTGACACCCCTCTGCAGAACAGTGGATAGACTAGACATGGTGTCAAGCAGTGAGCCTGTTAATGTGCAAAGCAGAGAGGTGTCAAAGCTGGCAAAAAGCAAAGCCTCCAGCTCTTCTCTGTCTCCACAAAAACAAGTGGATGTGGATGCTTGGCTGTCACTGGGAATCAGGGACCAAGGCCAGCATGACAGTACTGCCAATGTATGGTCCTACTGTCTTCCTGGCTCCCTCCCTACTTGCCTTCCACCTGCCCCTGAAGCTTTAATTATTTCCTGGGCCCAAAAGGATGCCTGCTTGCTGATGGTGAGTTGAAGGAAGGAGGAGAGATGGCTCCCTTGGAAATACAAAAGCCCGTCAGCCCTCACAGTGACCATGGGGAACAGAGTGACTGTCTCTAGTTACAAAGGCATCTTGGTGGGAAGATTTCCCAGAGATGTATTTATTCCATTAGAGCTATGCCTCCCTTCGGCCTCG----TATTGC-CAGCACCACATCCATCACTCTGCCACTGCATCCTGGGGGACTGTAGACATACTCCATCTGGAACAGAGCTGGGTGTTTGTAGATGGAACAGTTGTGAATCTAGGAAGATGCCCCCTCCATGGTTGATTTGCTCGGTCCTGGCCTTAGAAATAGTTCCAGCTGTCTGTATAGGGAAAAGAAGTATGGGT--GAAGATTTTTTTAGAAAGGGGGGAAAGACCTGAAAGAATGAGGA-------AATATGTAGATAAAATGGTATTAGTGATAGAAATGATTGGATCAGTGTGTTGATGTTTATCAAAAATGATTTGAAggcttgaaagatggctc-agaagttaaaagcact--------------tgttcttgcagggggcccagg---------------------tttggtttccaga------------------agccatgagatgattcacaatcatgtataactatagtcctgaggatccaacaccctcttctgactt---------ttgtgggcaccagacacacattgtactcagacata----cacataggtaaaacactcatacactcaaataaaataaaTTAA--------------------TCTTTTAACATCCTTTAAAGGATGACTTGGGTTGACAAAAATCCTCCTTGGAAAC--TCCTGGTACTT----AATATTC--AAAAGGGACAAAAGAAAAGTTGCTGGATCAGGCCCACACTGTTGCTTGGCATTCCAGGCTTGCC--------AAGAACAATG-------CCTCCCGGTGCCTA-TGTTCTAGATCTGGCTTGTGGCTAGAACTCTATAATACCTCTACTTGGGAAAGTTTCTTGT-TCTGTCCTCT----------------------AGTAGGACTTGCAGACTCTGTGTCTTCAGTTTCCTGGGTGCTTCATAAGGAGATCAAGGCCTGCAGACGTAGGGAGCAGGGTAGCCGTTGAGTGGAGAGAATAATCCAGCTGTGATGGTACTGGGAGAACTA-GAGTAGAGATCAGAGGCAGAGCTC---------TTTCCTACCATA---AGGAGGCTCTGCGTTTCATCTCTAACACT---------Gtga-------------taacgacaatgacaatgacaatgatgatggcaatagtgatgaca---tgatTAGGAAGTCTCCTCCCATTCAGTAGGACTCTATGCCCATCCATAGAGCTGGGCACAACTCTATGCCCTGTTCTAGGCATATGTAGGAAGTAGACATCTTTGCA
s HiC_scaffold_1 116205410 3569 - 233722169 AAACTTTTCTGTGTATTCTCAGTATGTTC------------------AGGAATATGAGGAAATAGATGCAGATAAGGAGCTT-----------AGTTCTGAGGAAGACTTTCTCATATCTGTATCTCTGACCATCTGGTCACATGAAGAAGTAATTATGGTAGATCTTTCTTATTGTAAGGTTTGGAGACTACATGAC-----------CTCATGTG----GAGATTAAGATGGATGGTTTCCAGTTTAAATGAAAGATGGAATTAGAAGATGCCTAAATTCCTTTCCAAGCTCTAGATTATATGCTTCTGTGTTCACactaaatagagaaaacagagactAAGGATTATAGTTTAACTATAAAGAATTAATATGAATATGTACAACTAAGAGGCATTCTATAAGTTCGGTAAGTCTTGGGTTTGGTTTTTAGagctcttgtgttttgttttttaagctcTTTTCAAGCTTACAGAAACATAACAAACATAACTTTGAGTCCCAGACCAAACCAGATTCAGTGTCTGCTTTGGTGTTCAAAGATACCAGACCTAATAagaaaactctctcaaaatttcaGTGGACATCATAGCTACTCTGATTTTATGAACTTTACCCtcttttcaaactttaaaatgatTACAGACACAGGGAGTGAGATGTCTTTAGACACCtgatttagtttcttttctcatcgat-gagacaaaatacccaaaattaaaagtggaaagatgcattgtagctcacagtttatagatatTTGAGTTTGTAGTTGGCTTACCCTAACCAGACAGgcatcacaaaagagaaaaaacagttcatgatgggcaGAAGGCACAAAGCACTGAAGTAGCAAGTGacaacagcagccctctttctgtcccttatatcctaTCCAG-----GTTACA-TGCTCTTG--------GGGCAAGTAGCTTTCACACCCAGGATAGGCCTTGCCGTGATCAacatccagaactatgccaaagcaatcagtggactaatttagtaatcacatatccTTGACCTTAGCATCACATGCTTAATcctagcaccacacactctagatccagccacctctataaagcc----ctacctatgaccacatgaggctttgagaagATAtcaagacacaagccataacaacacCTAACCCTCCCATAGGTCAAATCCTGAACTTGATCCC-TCTGAACTGAAAGCATAGATAAATGGAATTGGACCTACCCAAGTGGCTATCTCAGATGGCTCAGAATCCCACTTCTCAGCTTTTCAAGGACATATCTATATCTAATGAAGTGACTGatcttcctcctgctcctgggCTGTGTGTTCTGCACTTGTCTTCTAGATTCTGAACAATCAGTATGCCTCCCAAAATAAGCCCGATTCAGTGTCACTActtgt---tttttactttcttttccagtttctttagtcagattagttcatttattttagagGTTCTCAACCACTACTTCCCACTACCATCTTCCCTGAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTGGCCGAGTAAACCATTTATT--------------------------------------ATCTATGTGGTGGGAAGATACTCTCA------------GATTAATAAA-----------CTGATAAAGGAGGTGATATCAAAAGAGT--------GACT----------------CAGGCAGCAGAAGGCAGAATAATGGTGCTAGACCTCAGTGCCATTATGAGTTAGACAGCATTCCCCTTAATTTGTTCTCCT---TGTCCAACA--TTTGGGCTGCCTTCCTGTTCTTGCCCTGACCTGCTTGAACTTCTTATTTTAAACATGATTCCTAAGGAACGGAGTCCTTGTTATCAGCTTGAAGTGTAATATCCAGCAAGTCATCTTTCCTTTCTGAGCCTCAAGCTCCTTGTCATTGAGCCTTCAACTGCCCCTTGGGCCACACTGGGAAAGGCTATTCATTAAGGACACACTGAGTG--GTCTAGGCTGGTGTAAG----------------CAAGACTAAGGG-----TGCACTAATCATCCCAGAGTCTTAAA-GATTTCAAACATCTGTCAAAAAACGAGCATAAACTGGGCACTGTAATTGGGCCCTTAGTATCTCCAGCAAGTTTTCTTGACACC--TCTGTAGAGCAGGGGATGGATTAGACATGGTGTCAAGCAGTGAGCCTGTTAATGTGCAAAGCAGAGAGGTGCCAAAACTGGCAAAAAGCAAAGCCTCTAGTTCTTCTCAATCTCCATAAAAACAAGTGAAGGAAGGTGCTTGGCTGTCACCAGGAATCAGGGACCAAGGCCAGTTTGGCAACACTGCCAGTGAATAGTCCTGCTGTCTTCCTGGCTCTCTGTCTTCTTGCCTCCCACCTTCCCCTGAATCTTTAATTACCTCCTGGACCCTGTAGAATGTCTGTTTATTGGTGGTGaggtgaaggaagaaag-gagaaggctCCA-GAGAAATACAAAAGCCCCTCAGCCTTTTCAGCAACCATGAGGGACAGAGTGGCTGT-TTTAGTTGTAAAGATATCTCAGTGGGAAGattt-acaaaaatttatttttgccattAGAACTA---CTCCTTTTGCCTATAgaactatagctcagtggcacagcccctacctggcaagtg-----tgaggttctg-agttagATTCCA---GGTAccga-----------ggaggaggaagaggaggaggaggaggaaggag----------------------------------gagaaagaa------------gaagaagaaggaggaggagggggaagaagaggatgaggggaggaggaggaagaggggggaggaggaggagaacaagaagatgaagacgaagaagaagaagaagaagaagaagaagaagaag-------------aagaagaagaagaagaagaagaagaagaagcctcTATATCTCCAACACATTTATCACTCTACCACTGTATTCTGAGGGTACACAGAGATTCTCCATCTGAAGAAACTCTGGGTTTCCAGATGGAGCTGTTGTGATTGTAGTAAAAGCAAGACCCACAGCCTCCT----CTATAGTCACCTGG--------CCCTGCTCTGGTTTCAGGAGTAGTTCCAGCTGCCAGA---GCAGTAGGGTTGGAGGTCTTTTCAGAAAGGAGGAACGGAGAAATATATAGATTACATAAATTACAGTAGAGATAACTGGATAATTACATTAATGTTCATTAAA-TACGACTTTGCTT-ATCAAAACCCTCCTTGGAAGCATTTTTGAAACTTAGACAACAtccaaaaaaaggacaaaagaaa---ttcATGGTCTGGTCTACATTGCCACTTACCATCACAGATTTGTCTCAGAGTTGAAAGCTATGGGCGCTTCCTCTTTATGTTAACTGGTCCA---CAGGCCCACGCTTGGGACTGCAT-ATACCTGTGC-----AAGATTCCTTGTGGTTAACTTCTTGACCCAGCATGGTGAATGTAGAGTGGGA--TGCA---TCTGTGCCTTTGGTTCCCTGGATGCTTCCTGAGTAGAGGGAGGCCTGT-GACATGGGGCTCAGGGTGGGAGGCAAGTACAGAGGCTAGTCCAGCTAGCATTGTGGTGAGAGAGCGGtgggtggagctcagtggtagtgcacaGTGGTAGAGTGCCTACTTCATGCAGGGGGCCCgaggttccatctccagcactacTAAATGAGTGAGCagttaaataagtaaatagaattGTGGTTAGAGGAATAAAGCTCACTGTGCTGACACTCTGTTCAGGGGGTGTCCGCT---------GAACTCTGT------------------GCACAGCTCTCTGA------CTGGGCATGTAAAGGAAACTCTCATCTGTGCA

a score=9895
s chr3           105612612 301 + 160039680 CACCACATCCATCACTCTGCCACTGCATCCTGGGGGACTGTAGACATACTCCATCTGGAACAGAGCTGGGTGTTTGTAGATGGAACAGTTGTGAATCTAGGAAGAT-----------GCCCCCTCCATGGTTGATTTGCTCGGTCCTGGCCTTAGAAATAGTTCCAGCTGTCTGTATAGGGAAAAGAAGTATGGGTGAAGATTTTTTTAGAAAGGGGGGAAAGACCTGAAAGAATGAGGAAATATGTAGATAAAATGGTATTAGTGATAGAAATGATTGGATCAGTGTGTTGATGTTTATCAAAAATGATTT
s HiC_scaffold_1 116208106 284 - 233722169 CAACACATTTATCACTCTACCACTGTATTCTGAGGGTACACAGAGATTCTCCATCTGAAGAAACTCTGG--GTTTCCAGATGGAGCTGTTGTGATTGTAGTAAAAGCAAGACCCACAGCCTCCTCTATAGTCACCTGGCCCTGCTCTGGTTTCAGGAGTAGTTCCAGCTGCC----------AGAGCAGTAGGGTTGGAGGTCTTTTCAGAAAGGAG--------------GAACGGAGAAATATATAGATTACATAA-ATTA-CAGTAGAGATAACTGGATAATTACATTAATGTTCATTAAATACGACTT

a score=72829
s chr3           105616569 4284 + 160039680 [encoded data, 4875 characters]
s HiC_scaffold_1 116210195 4410 - 233722169 [encoded data, 4875 characters]

a score=33068
s chr3           105620857 1577 + 160039680 GCTCCAGCTCTAGCCTCCTAAGCTCTCCCTCCCCCCCAGGTCAGCACTTGTGCACCTCCCTCCAGGCCAGTG-CTCAGCTCTGTCTCAGTTCCTTCCAGTCATCGTTATTTCTTGTTGGGTTT-GTTGTTTATGGTTGTTTGGGCTTTTTCCCTG------GCCTTCGAGAGGGCATGAGAGCATGCTATCAGCATAACTAAAAATGTTTTTCGTTTGCCTCTGCACTTTTCCCAAGTCTCAGCTTTTCCTAAAAAGCCAGCATCTTCGGCATCCTTCCCTGGGGGCTTCCAAAGCAAGCAGGttttttttttctccct------tagtttttttttt--tttttttttttCCGATGTGAAGTTGTCAGAG--CCCCCAGTGTAGCCACGTTAGTGCCTTCAGATGCCT-CTGACTGAGGTCATTTGTGCTTGTGTCCTCAGAATTTCCCCTAATAGTCTGCGG-TCTGAGCTCATCCCTCATCTCA-GCCGGGGCTGCTGACTAGCTGGGG--------ACAAGCCACTCAACCATGCTGAGTAACTGCAGGcctgccctacttagctcgaaggcttacagtgaggaccacatgagCAGTAGTCA--AAAAAAAT-------------CACTTTACCCCACAATGAAACGTGTTATTCAGCTCTCTTTGGTTTTTGGTTTGTTGTTGTTGTTGTTTCTttttctttttacttttcccgtccaaggagaacgctcttcagattgggatggccagagctggcatcaccagagagagagc--aactcaaaatagaagcaaagatagacactaaaacgtgccttttaaagagctcagctcctaggTGCTTTGGAGCCG---GAGCCA--------GTGTGCAAGGCTGTGATGTAATCATTGGGCTGTATTTTGTTTGGGGCCTGAGTAGTCTCAATGGAAAGAAACCAGGAGGGGTGGTGGGGGTT-----GCTGTCACTCCATAAGAGCCTATGGAAATTA---GAAAAGTCCCAG--AAGATGGCACACACACCACTGATGGCTT---GCCAGGATTCAGCCAGGGGCCTCCCCAGACTCAACACAGCCTTCACAGCCCCAG------AACACACCACAGGACCCACCCTTCAAGAAAGCTTACCATT------GCA--------------AACCAGAAAGGGGCA--------------------------------TGTGTTTTGCTTCAGATTGGTCTCCACAGTTACAGGCCCTGTGGCCAAGGGA------CTTGACTTGCCATTTTGGATCTGAAATATGAAGGTGACAGCTTGCTCATAGGCTCGTTTTAGTG------TAAGACAC-----------------AAGTATGTTCTCAAAG-GTGATTAGTCTGTTCTTGCTTCGTCCACTT----TATCTCTGTTTTCTGA------CTATAAAAAGGCCACTTTCAACACACTAAATGTGAATTTAcca---------acaattctaacttctgggtatataccc-aaagaattgaaaa-------gcaa----tgtctgctcattcgtgttcatgac---actactcaca------gggctggaagccggaagcagcacaagtactcatccatggtgactagataaacaga--acctgctatatccattcagta-------------------------------gaacatgactcagcctcaaaagggagaa-------gagattctgacacagactgcaccatggataaacct------gatgataaatgaaaaaaaaaaaaagccactaacaaaagTCA
s HiC_scaffold_1 116214989 1741 - 233722169 GCTATAACACCCACCTTCTGAGCTGTCTC----CTGCAGGTCAATAGTTCTTCATCTTCCCCCAAGCCGCAGACTTGGTCCTATCT-AGCTTATTGTTGTCATtgttatttctcatttgattttgttatttatgACTGTTTGGGATTTTTGTGGGTGGAGTGCATTGGAGAGTACATGGGATCATGCCATCAATAtaactaaaaatgtttttagtttacCTCTACATTTTTCTCAAGCTTCAGCTTTTCCAAAAAGGCCAGCATCTTCTGCATTCTTCTCTGGGGGCTTCCCCAG-AGTTAGGCTTTGTCTATTTACATCTAAAACAGGTTTGTCATTaggttttgcttttcaaatgtgATCTTGTCAGAGAATCCCTGATGTCACCATATTAAAGTCTTTAGATGCCTCCTGATTGGAATTATTTGTGCTTGTGCAGTCAGAATTTCCTCTAAGAGTCCTTGGCTGTTGGTTCACACTTCAACTCCTTCCTGGGACACTAAGTAACTGAGGGACCTTGTGCAAGTCATTCAACCTCGCTGATCAGCAAC-GCACTGCCCTACTTACCTCCCAGAGTCACGATGAGGACAAAATGAGC--TGGCCATTACAAAAATGCTTTGCAGAGCATAATGTACCCCACAATGCAGTGTGTTATTCaaatcctgtt-------------------------tttcttttgctttttgcgt--------CAAGGAGAATGCTCTTCCTAATAGGAATGGTAAAACCAGCATCATTATAAGAGAAGTAGAATTCAAAGTAGGAGCAAAG-TAAATGATAGTTCACTTTTTTAAAGGAGTGCACCCCCTGGATGCTTTAGAATCATCTAAACTACAGCTTGGGTCTACAAGGTTGTGACACAATTATCAGGCAGTGTCCTACGAGGGATCAGAATAGGTTCAATGAAGAAAGAACAGAAGGGACATGAGGACTTTGACCATTGTCA-TACATGAGAAACCACTGAAGTTACCTGGAAAATTTAGGTAAGGATACCACACACACATCTGCCTACTTAAAATCAGAGGTTTCTCTAAGAACTTCAGAGACTGCAGAGggcctctcctgcctcaggcctcaGATATGTCACAGG----GTCTCTGAGGGAAGCTCATCATCTCCCTAGCAGCTTTCTTGGGGATAGTCAGAAGGATGCAGAGAGGACATGGAATAGTAAGGCCCCTGTTTGTGAGGTTTGCTACAAACTG-----------TACGG---CCTTGGACAGGAGAGAGTGTCTTGGTTTTCCC------atccataaaatgaaaatgatatctTATTCACAGGCTTGTTGTAAAGTTTAGATAAGTGACATAAAATTTTTAGCACAAAGAATGtcttaaaaatatgttaattttgttttctctttgtctaCCTCTCGTATACCTG-TTTCTGATTagctccacaaaaaa---------aaaaaattaagcatagaCTTATTATATGGTTTGGTAGTTCT-ACTTGTGGATATATACTCAAAAGAATTGAGAACAGGACTCCAACAGGTATTTattcacccatgtttatggcagtaTTACTCACACTAGCCAAAACAAAAGGTGGGATCAACCCAAGTGCCCAataatgttgaatgaatgaacagaatatatacaatatatattctgtatatatatatataatttgttatgtatataatgaaatatgaCTCAGCcctaaaaacaaaggaaattctgAAATTCTAACAGGTCCTATAGC-TAGATGAACACCAAATAAATGATACAGGGTGAGAGAAACCAGCCacaaagaataaaca

a score=62753
s chr3           105622470 3364 + 160039680 GTGGAGACAGTTTGCCAGCCCCTCAGAAGAGCAGTGATAAGGATGAAAACAGACTCAACCCTAGAGagtg-------tccttggactagtataacaaagtgtgccacaaactgggtgactaagcacaacaaaagcatatgttcataggtctagaggatggaagctcaagatcaagatatccagagatgctagctgggcctcct----gtctcccctttagaagaagctgttccccgtcttgctcccagctaatggtggtggccaggagctcttgact-------tgggggtgcatcactcctatctgtgcctctgtctctgcatcaccat--------cctgaggagatgatgatgtggacaactccactagttactggattagttcccaccttcttgcagcatgtcctcatcttgacctcattcca-ttcacaaagacactgttccaaataaggtctcattcaccaggaccagggaagaggaggagggtaggatttataaa---cttatgacaggacacagctcGTGCGAGGTAGCATCCAAAAGTGA------AATCAATATAGTAAAGGAGACAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAACTTTGCAGGC--GACAGAGTTGGG-GCGTTTAACCTCTCAGAACCT--------ATAGCTGACAGATGGGGCAATAG-------GAACCACTTTACAAGGCAGAAAGTATGCAAAAGTAACAGGCACATAGTAGGCAGCCAGAAAGTAGTAattattactattaccatcatcatcatcatcattattattattattgttgttgttgttattgttattgttaATTAGCTGGGTGCCAGGGCACAAGATAATGATGTGGACTAGGAGAAATACAAGCCAAAT-CCTTCAGGTGAAATCATGCCAGGTTGTGGGAAACAGGATCCAGATTAACAGAAGAGATGGCA---GGATCAGCTGAGTGGAAAAGATGCAGCCGATTTTGACAG-CAGAACCAGCTGAGA-AGGAAATTCCAGGAAGT-----GGGAGCTACAGAAACAAAGCAAGCCTCGGCGGTTAAAAAAGGCACAGTGTAGC-GTGGAGTGGAGCTCTTTGCTCCATTTGGCTGGAACTTTGGGAAATGAATAAAAAGTAATGGTGATTGAGGTCATAAAGGAGCATTTGGACCACAGAGGACAGAGAGTTTGCATTTAATTCATAGGCAGTGGGGGAGCCAATGAATGGTTTTTGGAAGGAATGATGCAATTAACCCTGAGTTGAAGGGAATTAATTCTGACCACAGTGTGCAAGATCAGAGAGCCCTGCAGGCTCCAGAGCAGGGTGTGACTAAGGCTTGGGCCCAAGGAGGCTCAGTGAACTGAGAACTCTTCTGGTTCAAGACTAGGAGCAAGTGGTAGAAA--GCCTGTGGCTGGGGAGGTCAACCTGCCCACTCTCTCTGTGCACCCTCTTTGGT---TTTGGTCATCATAAGGTG-GAAGAG---AACAGGGGCATGCTGGGAGATCTTCAGTATCCTCCCA----------------GACTCAGGAGACA-GAATTGTACCTGTGAACTGCTCTCCTAGGCTGTC--------CAGGGACAGATTGTGGG-----------TATCCCTCTGGGAGG-CAGGAGTATTCCAGACCCCTAGGCTTTGGGAAGATGAAAGCTAAAGCCTGGTCAGGCTGCTCAGCAGCCTTAATAGTTCTGCACCAACTTACCTTTCAGCTCCATCTTACTTTAGAATTCTGTGAATATTTATGAGTGAGCTCTTCCTTAATGAGGA-GAGAGCGAAAACATTAATGAGCTTTCTTTCCCAGTTGGGTTTGGGctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctttcttttttcttcctttctttttttTTCCCCCTCTTAATTCAGATCTCTATCTGAATTCTAGCTGTGCTTTTCTCTTCTGGATTCTCAGAGGTGAGAATGACCATTATAAGATTTCAGAGCTCCATCCAGGGAGAATC-AAGCACACATTACTGATGCTGAGGTAGTCCACGCTCATGGCCCAGAAGGCCCTGTCCACTCGTGCTGgtgtgtgtgtgtgtgtgtgtgt---gtttgtgtgtgtgtgtgt------------gtgtgtgtg-----------GTAAGTAAGCTGAGCTGAGCTCAAATGT--GTAAGAA-TTGCTACTCGCT-----------GCGAAGATAAGGTCAGGCCTGCTGCTTCTTG-GCTAGGAAAGAAGTGTTCAGTGTGTGCTAGGTGCCCTCTGGGTACAGTGCCTCCAGGCCCGCCCCTAGAAATTCCCTAGAACAGTACAGAACCCTAGG----TTTACACTAATACCAGCTGAGCTGTATCCCCTCCAAG-------GGACAACTCCCAACCTGACCCTCTGACCCTTGGGAGAAAACAGAGAGCCTCGTGGAGGCTAGAGGCAAGCTTCATGCAAGAATAGTCAATAGAAGGGACAACAGGATGGACACCGAGCACTGTGTCCTCTTGGGGTGTTCAGAGACT--CGGCTGTTCTCTCA-----GCTCACC------CTTTCTCCCCAACAACTCATGGTCTCTGAGGGGCTGCCAAGAAACCTGGCAATTGTGAACTTGCTAAAGCAGTGAGGAAGAAAACCCAAGGAGGTCCCCAGAACGGTAGGAATCCCTCCCTGGCAAACCATCAGGTTCTCAGCTGCCTCCTACAAGCCCACCTCAGCCATGGAGGACCTCCCAGCCTTCTCCAATGACACCTTAGCCATGGAGGACCTCCCAGCCTTCTCCAATGACACCTCAGCCATGGAGGACCTCCCAGCCTTCTCCATATGACACCCAGCTGCTCGTAGGCTCT-CTCTGACCCAGCCCTGATCAC------CTTTGAT----------CAAAGTCAATCAGAATTTGTTCTCAAGG-----GCTCCTGCTGGGAAGGAGGGACATGAGTCGGCCTCACAGGGATAGATCTTCTTTCATTCT-CTTGGCTCTGAGTCGCCTCCTC-----TTATCCAAGGGCCACCTTCACCCCAGATTGGGGAGAAAGAAATTAACCATTTGCTGCCTCATTTGCATTAGCTTCATT----------------TCCTGG-GCCCATGAGGCCCAGCCCAGCACCCTGGCTGGTGAGAC-AGTCACCTCCTAGGAGTGTGTATAATGTGTGCATGAATCTGTGCACATGTGcacacacacacacacacacacacacacacacacGTGTATGCACGTGCCTGAAAGAACAACGTTAGGCTGAACAGTCAGCCCCAATATGGTTAGCAGATGCTGGAAAACTAGAAACAATGAAGAAAACTAACAAGtggcttggtggtgtgaaaaccaaactaattacagctctttctgagagtgcaccactagtgatgctcagtcatatagccacagtggctggcttgcccatcactgacaggctgggtaattcctgttataggttctattcaaccacagcattaaattgtgtgtctgtgttcccaggtctc---tatagattg-tATTATCTGCCCCCAACTTTT
s HiC_scaffold_1 116218125 3289 - 233722169 GTGGAAGCAGTGAGCCATGCCCTAAAGAGGCTACTGAGAAGGGTAAAAACCGATCCTGTCTGTTAAAGTGCATTAATTCCCTGGGGCTGCTTAACAA--TATACCACAAACTAGGTGGCTTTAGAACAGGAATTCATTCTTTCTCAATCCTGGAGGCTGAACATCCAAGATCA-------CAGCATTGGTAGAATTGTTTCCTTTGAGCAGACTCTGAGGGACAATCtgttccctccctctctctgagCTAGTAATGATTGCCAACAGTTCTTGACTGTTGACTTGTAGATGCATCACTCCAATCTCTGCCTCCGTCTTCACATGGTCATGCTTCCTGTCTGTGTCTGTGACTTTG-------CCTCTTCAGTCACTGGATTAGGGCCCACCCTCTTCCAGTCTGTCCTCATTTTAACTGGATACAAACCCACAAAGACTCTACTCCAAATAAGGTCACTTTCAC-----------------AGGGAGTTAGGATTTCTATATATCTTTTGGGAGGACACAGTTCAACTCAGACAGCTTCCCAAAGTAAGAATAAAAACagtatagcaaaagaaaaaaaaaactggtgggggtgggggtgcatgcctataactccAGCTCTTgtgaggctgacacaggaggattactgcaaattcaagacttgcctgagcttcatagtgagttcaaggttccaagccagccagaactacaaagtgagaatctgtctcaaaataccgaaagaaaaaattgaaagctcAATAAAGCTGGGCTTTTTTAACCTCTCAGAACTTCCATGTATGCAATTATCAAGTGGGGTAATACCTTATTCTCACTACTTTGTAAGGTGTAATATAGGCA--------------------GGCAGGTAGTAAATAGTAACTAA------------------------CATTGTTGTAATTATTGTTCTTGTTGTTCTTGATACT----ATTAGCTGAAATCCAAAGCACAAGAAAATGATGTACATAAAGAAAAGTTCTAACAATACACCCTGGAATAAAACTACATCAAATGATGGGAAACAGGATC-AGCTAAATGCAAAAGATAACATTTGAAACAG--GACTTGAAAAGATGGACAGAATTTTGATAGATAGAATTGGCAGAGGGAGGGAATTCCAGGAAGTTACAAAAGAGTTACAAAAACAAC-----CCTTGGCTGC--AGGAAAGTATAGAGTATCCTTAGAGAAGAGCTATGATTTCCATTTGGCTAGAACtttggtgaatgaataaagagTAATGGTAATTGAGGTTGTAAAGGAACATTTGGACCATAGAACATGAGGAGTTTGCATTTAATTCATAGGCAATGGGGGAGCCAATGAATGGTTTTTGGAAGGAGTGACATAATTAAACCTGCATTTAAGAAAATTAA-CCTGGCTGCAGTGTGCAGGATCAGAAAGCTCTGCAGTGTCCAGAGCAGGGAGAGACGAGTGCCTGAGGCCCAGAAGCTCC-----CCTCAGG----TCCTGGCCAAAGGCTGAAGGTAGATTGTGAAAACTGTCCTGGACTCAGGA------------CAGTTTGTCT-TGTACATTCTGTGGTGAGTCTTCTCATTGTAGGGTGTGGAGGGTGAATCTGGCAGATGCT---AGATTTTCAAGACCCTTCCAATGGCTGGCATTTCTCAGCCTAAGAGACACCAGCAGAATGTGTGAGCTGCATTCACAGGGCATCTTGAGGTGCAGGGGAGGATCTTTTgctcccctcccctacccctctgGGAGACCAGGAGCCTTCCAGATCTCTGGGCTTTGGGGAG------GCACAAGCCTGGTCAGGCTTCTGAGCAGTCTTAATTGTTCTTCATTAACTTAACTTTCACCTCAATCTTACTTTAgaattttgtgaatatttatgaGTGAGCTCTTGCTTAATGAGGAGGGGAGTAGAGACATTAATGAGCTTTCTTTCCCAGTTGGATTtggggatt-----------------------------------------------------tttctttctttcttttttc----------tttttcttcatatctCAAATCTGAATTACAGCTACATTCTAACT----TTTTGCCTTCTAGTTCCTCAGAAGTGAGACTGACCACTGTAATTTTTCACTGCTGCATGCAAGCAGGATCTAAGTACATGCTGGGAAAGCTGCAGCAGTCTACATTCAAGACTTGGGAgga----------------ggattgtgtgtgtgtgcacaagtaAAGGTAGTGTGTGCACACATTACCACCAAGAGATGTGTGAGCTCTTCTCTAAGCAGGATAGCCAGACTG-GTTCAAATGCAAGTGAGAAGTCACTGCTTTCTCAGAAATGCCAGGGAAGATACACACAGCTAGACCTCTTTCTGTGCTTGGA-------------------CTGGACCTTCTCTGGTTCC--TGGCCTCAGGCAGCACCCCAGGAATTCCCAAGAGTGAGCCAGAATTCAAGACTGCTTGGTGCTCCTGCCA-CTGGG----AGCCAGTACAGGACTGAGCAGGCAGAGCCCAGACAGACCCTGAGGC----AGCAGAAGAGTGAGACTGCTCCTGCAGCCAGCACAGCGTGTCAAGCAA-------------AAGAGAAGTCAAAGGGAGCACAGATATTTCTCTGCACTCAAGATGCTTGGGGAATACCTGCCATCCGCTCACATGGGCTCCCCTGGGATCTTTC---------ACTCA--GTCTCCAGGGGAGTGCTAAGAAGCCTGGCAATTGTATAATTGAtaaatccattaaaaataaag-ctgagGAGACTCTCAGAAAGGTGAAACTCCCTCTC----------------------------CCTAGAAA----------------------------------------------TAGGTAGGTGGCTTCTCCATGACCTCTCC---TAAACTTCAGCCACAGGAAACTCTGCAACCTTTTCCATCTGAAATCTATCTGCTTTTAGCCTCTGGTCTGACATTAGTCAAATCACACTGCACTTTGGTGTACACTTGGCCAAATCCCAAGAAATTTGTTCTCAAGGAGTTTGCAGCATCAGGGGTAGAGAGA--------AGCTTGGTGCAGGCAGATCCTCTTCCATTCTCCCCAGTCCTGATCATCCTCCTCCCCCTCCAACTAGAGGCCATCCTCCTTTCTATTT-----------CCCTCCCCATTCACTGCATCGTTTGCAGCAGCTTCACCATCAAAAACTCATCAATCCAGACGTTCATGAAGCCCAGTCTTGGACTGTGGCTGACAAGACAAGTTAGCT------------TATaat---tgcgtg----tgtgtgtatgtg--------------------------------tgtgtgtgcacatctcTGTAAGAA---------GATGAACAGTCAGCCCCAATATGATTAGCAGATGCTAAACAGctaacaaaaaagataaaaaacaaaaactagttt-GCAGTGTAAAAGTGAAACTGGTT------------------------------ATGCTCAGTTGT----------------GCATGCACACTGTTGGTGTGGTGGATCATTTCCATTATAGGCTGCACTTGACCACAACACCAACTTCTGTTGCCATGTACTCAGCTGTCATTCATGTACTATTATCATCTGCTCCCAAgcttt

a score=12981
s chr3           105625820 463 + 160039680 TGCCCCCAACTTTTCACACTGAGGTTACTTTTATTAGACGTGGGAGGGAGATGTTCTTTCATTGAAAAAAATACT---AAGGGGAAAGGATTAAAAATAAAAAAACAACAATTGGGTG---TTAATCATAGAGTGGTCACCCACATTCAGCCACTATCAATATTACTGGGTTCTTTTTCTTG------GTCATTTT-CCTCTGTGTAACTTAATTAGCTCCTTCCCTCCCTACTGTAAGTCATTTGGGTCAAG-ACCAAGTTTGTGCTACAATGAGCAAGACTGTGTTGAACACTTCCATGCCTTTCCTTCTGAATGACACTTGGGTAAAATTATTGGGCCACTCTAGTCTTGGGCAATTTCAGACCTCTTAATGGATACTGCCAAGTGCCTTT--CGGAAGTGCTATGCCAACTGGCACTG-----AGAATGTCCGTCTCATGC-CTCTTACCAGAACTA--CTGATATTTtctctctctgtctct
s HiC_scaffold_1 116222130 461 - 233722169 TGGCCCCAACTTTTTTCATAAAGTTTAGCtttgttagaaat---ataggcaTGTTTTTTCattgataatattttttaaaaagaggaaaaagtggaTGTGAAG----------TAGGTGAAACTAATCATAGTCTGATCAGCCAAACCCA-CTACTATTGATGTTG-TGGGTTTTTATGTTTGTCTTTAACCATTTTTCCTTTGCATAATTTAATTAGCCAACCCCCTA---GATGTAAATCATTTAGGTCAGCCATCAGATGTGTACTGCAATAAACAATGCTGTGTTGAAAACTTTCATGCATTTACTTCTGCGTGACACTTAGGTGAAATTATTGGGTTATTTTGGTCTTGGGC--------GCCTTTTAATGAATCTTGCCAAGTCACTTTCCCAAAAGATTTGTGCCAGCTGGCAGTGTTTGAAAATTCTCAGTTGGATACATTCTGGCCagtaatagttttatattttttgcccTAGTTTTT

a score=173092
s chr3           105627696 10911 + 160039680 [encoded data, 12224 characters]
s HiC_scaffold_1 116223661 10798 - 233722169 [encoded data, 12224 characters]

a score=38354
s chr3           105641897 2289 + 160039680 TATCTGTCTTTTCAGCTCATGCTCAGTCAGAC-----------GAGCTAGATCTCATATGTGGTCCCATCTCCACCCTCCAGAGGAAAAAAAAAAGGAGGAAAAAAATATACTTT-GGGGAATGATCAAGAGTTGGCTGAATTTACTGAGCTAAATCAACCCCAGCCCAGAAGCTCTTCGCCCCGGGGCTGCAAACTCGTAAGATGTAAAAGGACTCTTCAGAATTTTCTGCCACTCACTGGAAACACTAAATTGGCCCCAGGCTCTGGAGCAGG--TTTAAGTACCCGAGACTATGTTAGAAGTAATTGTTAACAATTTGGGGGACCCAGAAATTCAGTCCTGTTAAAAGTTCAAGGAAAACCCTGTCTCAGAAAGGTGAACTGAATTTAGCCCTCCACACTAAGGTATCCTTA------AAACAGCTGGCCATGTGCCCAGCAAG-CACTGGGGCC-ATGCAGAGCTATGGAG-------CCCTCTTCTGGGCGATGACATTACA---CTGTGCCAGGCCTGCCCTGGTA--------GAGGTCACA----------CCCAGT-ACTGGAAAGAC----TTGGACCTAAATG----------------------------TGCCAATTAGGTCTGGGTTGTTG---CTGAGACTTAGAAA---CTCTCACTGCTTTGAAGTCACACAGCTAG----------AGGCTTGC---ACATGGCC-TCTGACTCCAGAACC--------------------ACATTATACAGAGT-------------GGAAAGGC-------AACTGGGAAACAGCCACCAGCAGTTTATGCCAAATGAGATGAGGAGTCAGGCTGTGCCCGAGGAACTTAGAGATCTGTCATGTTGGTACAGGATCAGACGAGCTCTAGAGTCCCCAAAGGCAGAACAGGAACTCAAAGGTGCTGTCTAAAGATGAACTGACAGCAAGAGCAGTCCACGAGTGG--CCGGCTGACTTCGTGCAGGGTAACTAGAGGCTATCGCTTCCCAGCTCAGAAAATGCTGTGATGGGCTGGACTTtcatagaagccctatgtagaaaattcctgttgttcatttttcagaataagtaaa-tgagaccc--aggaagcttgtgactgctggaagtcTGTCGGCTggagggggggaagggtaaggaggagagagaaggaaagggagagatggggagggTACACTGACTTCCACACAGGCCTATCTGACTCT----------------AGTCCACCAGTTGGGCAGTACAGAGGCT----------AGGGAGGGT--------------------GGCCTGCCA-------------------GTCCTGTAAG--TCTAAGACTGAGTTAGATGTAGCTTAATGGGAGAGGGAGAACTA-----GTCCTCAGAAGAGGAGGATGGG-AGGAGAAGGGGAAGGACACCTCCCTACCTCCAGAATGCAGAAGATAGTCTCAGCGTAGCTCAGAGCAGAGGAAAG-GAATGCAGACAAAAGTCCTGGCAGGAA---AGAGC-----------ACACTGTGTGCTGA-----CTGGGATAGCCTGGGATACCTAGTGACCACGTACAGGCTCCAATACCTAATCTCTTAGCATCTTAATTTGATGTGCCTCC---CCCCCCCCCAGGCCAACA--AGCATCATCTTGCCAACATTCTCCTCCTGTCTGTCTCTACCTAT--------TTCA--CAGAA-----AACAGAATCCCAGGTGAGCTAACAGAGGCTAGACTGGAGCTTAGAGAAGATCCATATCA-TCAAGCAACACATAGGGAGTCCCTCAGGCTG--------ATTGCCTAGCTAGCCCAGCATCCGCAGCCTATC-TCTCTAC-CACTTCCACCTCAATGCTTCACCCCTGAGAGTCACTGGTATCTGACCTTGGTCCCATCAGGCCTTTGTTGCATA---TTTTCAAGAGCCTTCATCCCT-------GTATCCAGCCTTCCCGTCTGCATCTCATGACCACCATGCTGTTCACCAAAGGCTTGTCCTGGGGTTTGCTCCACTGTGGAGCTGTGGTAGCACATCCG-----------------------TTTCTCAGATG-CTTGCTAGCCCCAGGTGGCAGAAGGCCGAGCATCTGACCCAGGGAGAAGGGCGTCTGTGATGCACATATGGAGAAAGAGCAGCAGATGGTGCTCGCCTGTGGGACAAGGTCTCCAAGGGA--ACTCCATGGTTTGGCCAGACATGGTCTGTTCCACACAGCTCTTCTGGGTCAAGCCATACA--CCCAGGAGTGTGGGAAGATAATGGTGAAGGGTTTCCTAGGATCTGGTATTGGGGAAGATAAACTGAGCAATGTGCAGTTTCCAGAAAAGCATGCCAATCAAGACTGGAG-TAGCAC-----ACATGCCAGTGTATCTTGATTCCACT---------TGCCCTGCCTCCCCAAGTGTCATCTCTCCTTATGAGCCCAGAC--------AGGAGATAAAGGCCATCTGAGCCTCTGGGACCTCAACCCTT---CCTTCTGTACTTCTTCCTCAAAGGACAAATGTTTCTGACAATCACATTCAAAGCAAGCACA
s HiC_scaffold_1 116235852 2402 - 233722169 TATCAGCCTTCTCACCCCA-GCCCAATCTCACATGGAGTCAGTGAGCTGGATCCAGCACATGGCTCCATTTCCACCTtccaaagcaaaagaaa----------------tacttCAGGGGAATGATCAAGACCCTGTTGAAT--------------CAAACCAAGCCCAGAAGCATGGAGCCTGGGGGTAG-AAGCTTGTAAGATGTGAAAGGATTCTTCTGAGTTCTCCAAGGctgaatggaaacattaaattGGCCCCAGGCCCTGGAGCAGGATTTTAAGTGCCTAAAATGAGGTTAGAGGTAATAGTTATATATCCTGGGAACCTAGAAACTTAGTCCTGCTACCGGCTCAAGGGGAAACCTGCCTTAGAAACGTGGACTGCATTTAGTGTACCACCCTAAAG-GTCCTTATTGCACTGTCAGCCTGCTGTGTGTCCAGTAAGTCAGAAGTGCTAACGCAAAGCTGAAGAaagaccctcctgcttcagaaCGATGATATTATGTGTCTACCACGTGCCTGGCTTGGTATTCGGGCTGCAGTCACAGAGCTTACTCTCCAGTGGCTAGAATGACACAATCCGACCACCATGTATGTGCTGCACTGTGGAGGTCCATGATTGCCTATTAACCATTAATCAGAGGACCAGAGATTTAGAGATCTTCCTTATTGTCCTGACATCACACAACTAGTGAGAAAAGCAGGTGTGCTATCCAGGGCCTTCTGACTCCAAAGCCTGCATTCTGTGCATGCCACTACATTGTGCTGAATTTACAGGTACAGAGAACAGGCCACAGTTAACTGTGAAACAACC-CTAGCAGTGCAAAGTAGATGAAATGAGGAACTGGGCTGCTCCTGAGGAGCTTGGAGGAGGGCTGTGTGTGGACAGAGTGACA---------------------GTAGACCA--------------------CAACATGA------------AGCAGCCCAGCCATGATTCCAGTTGTTTAC-TGCAGAATATGTAAGCTCTGTC----TGCAGCCT--AAAGTGCTTGGACAACCTTGACTCTCATAGCAGCCCTGCAAAGTGggttaatttttgtcattttttcacaTTAGTAAACTGCAGCCCTGAGGAAACCT----------GAGGTCTTTTAGCTGG------------------------GCAAAGCGAAAGGAAGAATG-----------------TCAGCTCAGGTCTGTCTGATTCCACACCTGTGCCGGTGGAATCTACCAGGATGGCAGAGCAGAGGCTTGGCTGCCAGAGAGAGGGCTCCTAAACCTCCTGGAAATGGGCCTGCCACCCTGTGACACCCTGCCCTGTCCTGTAAGAATCTGAGACTGAGATAG----GACTCAGCGGAAAGGAAGGAACTCTCTTTGTCCCCAGTAGATAAATATAGGTAGGAGA--GGCAGGGAAAATT------CTGAAGATGGTGGAGGAGGGTCTTGGAACAACAAAGGGCTGAGAAAAGCGGTTCCCGATAAGATGCATAAAAGGCATTTGGAGCCACCTGAACTTACACTGGGAGCAGCGGAGTGTGTGAAATTTGTGGACATGTGATGGCCACAGATAGGGTCAAGTGGCCAGTC----AGCACCTTAG-CTGATCTGAGGCTAAGACCCCTCTCATACCATCATCTTCTGCCTCTCACCCTCTTTTGTCTCcagcctctctctccctctactGCCAACTCAGCCAGAATCATTGATGGAATCAGAGAGGTGCTAGCAGAGACAAAACTGGGCCTCAG---AGGTCCCTGTCAGTAAAACAACGC---TGGATCCACACTAGTTGGTCTGTTTATTATGGATCCAGTCCATCTTTTGCATCCTGTCACCCCTATGGACATTAACCTCAAGACGCCACCTTCTAGAGTGCC----------ACTTGGCCCCATCATGCCTCTGCAGCACAGATTTCCCAGAGGCCTTTTTACCTTCTGCCAGCATCCAGGCTTCCTTTCCACAATACATGCCCACA-------TAGCCAGAGGCTCACCATGGCTCAGACTCCACTGTAGAATGGAGGAGGCACATCTGAGAAATCTTGGTAGAAATCTCACATTCTGAGAAATCTTGGTAGCTCagggtgccagaaggctgaggaGCCACCCTGGGGATAAGGACCTCCGTGAAGCacagatggagaaacagaaacagatggTGAAGGCCTGAGGAACAAGGTCTCTGAGGGAGCACTGCATGTTGTG---------------------------CTTTCATGTCAATCTCAACAACCCCAAGAGTGTGGGGAGATAACAGGGAGAGATTTCCTAGGATCTGAGATTGAGGGCATTGAGCTGAGCAAGGTCCATATTCCAAAAGAATGTGCCTGTCAGGATTGGGGCCAGGGCGTTGGACATGCCGATGTAGTTCAGGCCTACTGGGGAACACTATCCTAGTTCAGGGAATCTACTATTTCCAGATTGGACCAGACTCATTTCTAGG-----CAGGGCTGCATAGTCTTTAAGGACTCAGGCCTTCTGCCTTCTGCTTCTTCCCTCCAAAGTACAGATATCCTTGACAATCAC------AGCAGGCACA

a score=17696
s chr3           105649022 435 + 160039680 TGGGTAGTAAAGAGACAGTGCTTTGGCATGCAGTG-ACAGTGGACTCCCC-CCAG-TGGTCTTCCGGTCCTGC--CTGAGAGGCAGGCAGAAGCAGCCTCC-AGCTCAGCTGT-ACTTATCTCCTGGCACCTGGAGGAGGAAATGAAGGC-GCAATTAACTGTACAAGGCGGGTGGTTTGTGCAGCTTAAGTTCAGATAAAAAGTTTAATTATCCCTAAGCCCTAATACAAATTAATTAGCCTTCCGTATTAGGGAGGTAAGCTTCCATGCTCTTGCTTCAGCCCAGACATCACTGTGGATTACTGAGGACATGCTGAGAGAAGGGGCAGGAAGCAG-AGAGCACCGAGTCCTGGATTCCCACCTGTGCAGTACAGACAGGTGCCCCATGCTAGAGGGTCTAGGTGGAGTCCTGAG-----CCCTGTGCCTGAAACATCGCCTTTGTTT
s HiC_scaffold_1 116242145 443 - 233722169 TGGGCCTTAAATGGGCAGGGTCCTCACCTCCACTATAGAATGGTCTCCCCACCAGACAGGCTTCTTGCCCTACTGCTGAGAAGTGGGCAGAATCAGATGAGGAGCACGACTTTCACTTATCTCTTAGCACCTGGAGGAGGAAATGAAAGCAGCATTTAATTGTACAAAGCGTGTAGTTTGTGCAGTTTAAGTTCtgataaaatgtttaattatCCCTAAGCCTTAATACAAATTAATTAACCTTCCATATTGGGAGGATAAGCTTTcctgctcttgcctcagcccagACATCACTGTGGATTACCGAGAATGCACTAGGAGAAgga--agacaacagaaaagcatGGAGTCCTTGGAGCCC-TCTGCTCAGGGCAAACAGCTGCTCTACTCT---GGCACCAGCAAGAATTCTGGATCAGCTCCTAAGTCTGAATGAACACCATAGTCT

a score=22137
s chr3           105649944 1412 + 160039680 TTTGCAAAAGTCCAATCTAAAACTAACAGTGGCCTGCGTCCAGAGCTTACTT-------GCCTGCGAAGAGC-----------------GAGCACTTTCACAAACAGAAACTCATTTCCTCC--------------------------CCActattctataaatgccaggaa--------accaagaa--agaaggcaagtgatatgctcaaattcaccagtca----gtggcaaagccaggtgttgggcactcagcgggcaggctggctctcaggacccatgctttctatcactttaccatactgCTACTACTAGGGGCGTGGTTAGGATGGAGAAGAGGGAGCCGATTCCAGCCAAGTCCTTAGAGCTCTCTTATTGGACTATTATATCTCCCCAGCCCTACGTACTCC------TTTCTTCTCCTGCCTGAGTGAGAAGAAAGTAAAGGGTAGGGGAGGCCTGTAGGAAATAGCCCAGGTCTAACCCCAATA-TTCTGCCTCCTGCTACAAGACTGACCATGAGAAAGATCAAGTC-TCAC------CCAGCAC---------------------------------AGCTGTCATTT----------------------AACTCCT---------TCGATCCATAGCTCCACCCCCACC---------CCAGTCCTATTCCTTCAGCAAAAAAGTTCCCATTGTTTAGGTGGC-----------AGATTTCAATGTACTTCTGCATCGTAAGCCCCCCTCTCTGTGTGGGATTCAGTTAGGCAATCTCCCATAGGTGTGTAAGGGTGCCTGGCCTGTGACATGTAACACAGCCTGGAAATGCAGCCATGTGCATCA-GGAACTGGGGAGAACCGCTCCCTAAGCCACCTTCCTGGGTGGGACCTGGTCTCCTGTCAATGTCTCCTGTTCTCGTGTCAAGATGGCATGAGAA-GATCAGAAACTGTTACACTGATGGACAGTGCTGAAGTTCAATTCTCCAGTGATTTCT----TCTTCTTTTTTTAAAAAAAAAAAAAGTATAGATTTCT---GTCAGCTAAGCAAGTCAttgattgtttgaattaaa-tgctggtggtatcatttgtctttgttaaaatcaatctggctgatttcacccatgattaccacctatgaaaatcccttggactcctaaAGACTCCACTTCATAGTAACTCTACCATCAGGAAATCTGACAAAA--------CCTAAGAACAATCAGCAAAGGCAGCCCCGCAGGCATCACCTTTATTGGCTCCAAATGAAAGA-----AGAGAAAGCAAAACTAGTAACTACTT-TTGAGCTGGATCAATGGGAGTGGAGGGGATGGACCAGACCACTGAGATGTGGGGAAGTCAAGGGCACAGCTGGCCTTCAACAATCGCTAGAACCACAGCTCACATGCCATCACATTCCACCTTTGATCCCTTTC---TGTGCTTTGGTCCTTTCCTTTCCTAACAGCAGCATGGTCTTTAACCACTGCACAGA-TGTAGCTGCCAATAGCTCCATAGACTGGCATATTGAAGCTTCAAGTTCTTTGAAAGAGACTGATCTGGTCCCAAAGGTATA
s HiC_scaffold_1 116243683 1481 - 233722169 TTCACAGAAGGTCACTCTAGAAACAGTGGTGATCTAAGCCCAAGGCTTATTTCACAAACACTTGTAAAGctcttactgtgtgccaggctgagtgcttttataaataataacCCATTTAATCCATCACAACAACCCTGTGAAATACATGCCATTATTTTATCAATGCCAGGAATTGGCATTGATAAGAACAGGAAGATAAGAAATGTACCCACATCACTCAGCTAACAAGCAACAGAGCCAAGATTTG------CCCTAAGCAGTCTTGCACTGCGTGAGCA--CTTTTGAGCACTACACTGTATTGCTACCACTGAGGCTATGG---GGTTGGAGAGGAGGGGGGGAGTTCCAGCTGGCTCCC-AGAACCCTTCCCTAGGACCAGCCACTCCCGCCCCTTCCACACACACccatctcttccttctcctcccacaA-GCGCACAAAGTAGAACACAGAGTAGGGCGATGGAAAACAAACCA------ACCCCAACAGTTCTCCATCTCACTACTTGAATGACCTCGAACATGTTTCTGTCCTCACTGGACTCCAGCTCCTCACTCTGAAGGCGGCTTACCCCTTCCTGCCAGGGTGTTATTGTGAGACCTGTTGATGTGGACAAAGTTCCTAGCACGGGCTCGGTACATGGTTCCCTCTCATCCTTTCATTCTCCATCCCCTCTTTCTCAGGCCAAAGTTTCCCATTCCCTTGATCATTTCCCTTGATAAGATTTCCAAAAAATTAACCATCTCAACCTTCCTTCTATG-ACATGATTCAGTTAATCAATAACCTATAG------------------TCTGT--------ACAGTGCCAGGAA--GCAGTC---TACATCAAGGAGCAGAGGATGAACACTC---AGGCCTTTTTTCTGGACA----CTGTACTCCTGTCA----CTCCAGCTT-------AACATGGCATTAGGGCTCTTATTTGCTATTACACTGTTAGCCACTGTTGAAATTAAATTCCCCGGTGATTCTTGACATGCACTCCTTTCAAAC------------CAGGTTTCTTCCATCGACTTCACAAGTCACTGATTATTTTGATCAAAATGTCTGTGGTGTCATTTATCTTTGT-AAAATTAATCAGGTTGGTTTCAGC-ATAATTACAACCTGTTAAAATCCTTTTGACTCCTAAGGACTCCAATTCATAACAGCCTTGCCATTTAgaaatttgagggaaaaaaactgttttaaaacaatcagcaataacagtgCCCCCATCATCATTATcataaaatccaaaacaaaaacaataaagtaaagcaaaaatgataattttttgttACGCAGGGTCAA----AGT-----------ACCAAACAGCTAAGTCACAAGATGGTTAAGGATGAAGCTAGCCCTCAACAAg---------------------accatttttttccttcccaactCCCTTTTCTATATATGTCAG-CCTTCAACCTCTCAATTATAATCTGTTTTTTT-CCATAGCAGAAAGTTTAGTTGCCAACAGTTCCAGAGCTTTACTTGTTACAGCTTTAACTTCTTCAAAAGAGATTGATCTGCTCCCAAAGGTACA

a score=17411
s chr3           105655158  861 + 160039680 TGCCTTTGCGTTTCCTCATTTTACCAGCAAACAATCCTCGGACTTGCTAAGGCGGTTTCTGCTACAGATAC------GGCCGGCTCACAG-------------------CTTTGGCCAAGGGAATCCTCATAGTTCTTCCCTTCATAAGGCTTTTAAATTATCTCAGTAAAGAGGAAGCTAA--GCCTAACTGCTGTGGAGAGCATCGTATTGATTGCAGGAAGGAGGCTTGGGCC-AGCTGCCTGGGGCTGAGCAAGGGCCAGGCCGCACTGGTCCC-AGGGGCAACAACCATTGTGTGAAGCACTTAAGAGAGT---TCTAAA--CTGAGAAGAG----------TCCAGCATTACTCCAAAGTGGCTAAAGCAGCTGAGTGTCAGAGACCATGCGCATCTCTGAGACGGTACAGTTGGT--------TAGAAAGGAGATGAAGTCAA----GATGCACAGGCCCCATCTCAGCTATGTAACAGGCAAACCATGACAGAACCCAGA-CCCCAGTTACTTCATATGTAT------------------------------AAGTGAACAA----------------------------------------AAGCTGAGTTTATTGTTGGTTTCTTCATTATACTTGAAAACTTTCCCGTCTGCTTCAAACCCACCCATGGCTCCTCA-TGTGCTTGAACTCAAATCCAAACCCCTCACCCC-AGATACTAGATGTTGAATGCTGTGTCC-TGCCTAcctcctcagcct----------------------catctctgtctgcagccctgctagccccttgataatttcctgaaagaacta------tttgtattacc-cgaggcctct-tatttcctgatccttctgccgggtatgcccaggcctgggtgttttacttggctgg-------------aaatcacacttcacacctt---atctcagtgaggcctttcctaaccacat------------------catttGCCTCTGTTCTCTTCATAGAGACAGCCGAATGCCACAGGGTTGT
s HiC_scaffold_1 116248382 1017 - 233722169 TGACTTTGGGTCTCACTATTTTTGCTGCTGTCATTCCT-GGTCATGCCAAGCCTGTTTATGCTCCAGACATCTAGAGGGCAAAAAGACAGAGGAGGATGATATTTCAGGCTTTGGTCAGAGTAGTTATCACAGCTCTTTGCTTAATAAGGTCTTTAAATTATCTTAGTAAAGAGGAAGCTAAACACTTAACTACTGTGGAGAGCATCTTATTGATTAGAGGA--GAGGCTCTAGCTGGGCTGCCCAGGGCTGAGCAGGAACCAGGCCATGTTGGTCCCTGGGGGCAGCTGCCAGAGCATAAAGTACTTAGGAGAATTTCTCCAAGCTCTGAGAGGAGCAGGCAGCATCCCAGTGTGGCTTCA---TGGCTTAAGGAGCT--GTTTCAGag-ctctctgtctccctctgatAGTGTGGTTAATGGAATATGGAGAAAGCAGGAGAAGTGGATTTTGATG--------CCAGCTGAGTTAAG--AAGGGAAATCCATGTGGTATGTCTGATCCTCAGTCCCTGCATCTGTACCGAGTTCATAGGGCTCATGGGCTCTATGAGaggtgaataaataaaaatgctttgtAAATTGTAAATCTCCACATGAGAAGAAAGTGAGCTTATTAT---TTTCATCATCATA---------TTGCTCTTCTGTTTAAAATTCTACCATGGCTCCTCACTGTACTTGGAAT-AAATCTGTACTCCCCACCCTGACCCGCCAGGCACTGTGTGGTTTGGCCTTGCCTGGCTCTTCCACTTCCTTTGATACGTTGTACCCCTCCATCACTGT-----GTCCCACTGGCCTCTTGATAATTGCTAGAACAGGCCAAGTTCCCTCATACTACCTCCAGGTCTCTATACTTCCTGTTTTTGCTCCCTGGCATACCCACGCC-AGATGCTTTGCACAGCTGGACCGTTTACATTCAGATCTCAGCTTAAATGTTAGAACCTTGGAGAGGGCGTGGCCAACCACATTCCCACCATCTGACACAGCATCTACAGCTGTTCTCCTCATAGTAGCAACCACAGGCCATGGATTTGT

a score=403556
s chr3           105658338 16540 + 160039680 [encoded data, 18566 characters]
s HiC_scaffold_1 116249388 16774 - 233722169 [encoded data, 18566 characters]

a score=5114
s chr3           105658611 131 + 160039680 TATGGAGACATGGTGCCTAAGACAATCGCAGGGAAGATATTTGGCTCCATCTGCTCCCTCAGCGGTGTCCTGGTCATTGCCCTGCCGGTCCCTGTGATAGTCTCCAACTTTAGCAGGATCTACCACCAGAA
s HiC_scaffold_1 117603162 131 - 233722169 TATGGTGATATGCACCCAGTGACCATTGGGGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCGGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAATTACTTCTACCACCGGGA

a score=5662
s chr3           105658611 139 + 160039680 TATGGAGACATGGTGCCTAAGACAATCGCAGGGAAGATATTTGGCTCCATCTGCTCCCTCAGCGGTGTCCTGGTCATTGCCCTGCCGGTCCCTGTGATAGTCTCCAACTTTAGCAGGATCTACCACC-AGAATCAGAGAG
s HiC_scaffold_1 117667991 140 - 233722169 TATGGAGACATGGTGCCAACCACCATTGGGGGAAAGATAGTGGGTTCCCTGTGTGCAATTGCAGGTGTATTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCAccgagagacagaggg

a score=98702
s chr3           105676580 3154 + 160039680 ATTTTCTAGCAAAAGAAAAGAGAGGGGGAGCAAACACTAAACAAACCTAGAGAGAATCCAATTAGTTTCAAGTCTAAAGGGTAGCCTCGTCCCTAATTAAGATGCTGTAGTATCCTAATTAAAATCCCCTAGCAATGACAAATTGTGAACTTGACTCTGTTGTGGGGGGGAAAGAGTAGAAAGAGGTTAAGTTCAATTACATAGTAATGACAGGACCTTATTTAAGTATGCAATTAAAATCTCTAAATCTTAGCAATACATTGGACCTAATC-TAGGTTTGCTA--------AATTATTTCATGTAACTT-----CACATGTATAGTACTGATAT--------GTCCATATATGACCATGCCAAATCACAGAAATGCAAACTGAACA--GTTTAAAAAAAAAatatatatatatatacatatatatatacatgtgtatatatatatCCCCGAGGGACATTCCATATTAAATGACAATGGCCATGGGTATTTGCTGACA---TTAGGATAGAGTCTGTCTATACTGCT-----AAGTATGTACATAGTGAAGAACTTTCCTTTTTTAAAGTGAATAGATTGCTCAATACATAAGGTATTTTCTTGCCTAAAATGCCAGTTCACAG--CAAGATACCA---GACTGAAAAGTTTAGTGACAACAGAACACTTAGCCTCTAATTTTTAACTTTTCTAAATCATAATTTTAGAGGCACTACCACCTCAAAAAATGACAGATCTCTCTCA-ATCCTAATATTCAAGAAAAAAAAAAAGGAAAAAAGAGAAAATTCTCTAACACAGATTTAACAAGATTAGGACATACTATGGGAAGAGTCAGAGCCGACTGAACTT-ATCTTCCA------AGTACTGAGCACTAGAACCTTCCATCAGTCTACCAGCAGCAGAGTAGGTCTGCATCTATGCAACCCATGTCAAGtctcaaccagggttgcatagatacacttctgaggacctatgagccctttgaaattctgctcacaatcccactaagg-aatgagaaattttctg--------------------------------------------------------------------------gggtca-----acctatctatagcttctaaaaggttT------AGAACCCAAGACACAA-GAGGACTGGCTGCCCCTAATTAGAA-------GGTAGCCACAGACAATGCTGACCT---CACAGTGAAA-TGTGGGCATCTT-CACAGCTTCA-------------TCAGGAAGATGAACAGAAAGCAT-TTAGCACATTTACCTAAATCTGTTTTC-ATGGCTCACAAAACTACCACTGGAAGCAGA----------------------------GCACATTAAAAAATTCCTTCCTGCCTAAAC---AAAGATCTACCATGATAAAAATTTCCACAAGAATGCAGCAATAGGg---------------ctgggcgtggtggcgcacgcctttaatcccaacactcgggaggcagaggcagaggcagacggatttctgagttc--gaggccagcctggtctacaaagtgaggtccagaacagccagggctatacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaagaaTGCAGCAATATAGAAATGTAATATAAGTCctggagagatagctcagaggttaagagcactggcacctcttctagagcaaacttcaattcccagcaaccatatggtgattcgtaactctctataatgagatctggtgccatctcccggcctgcaggtatacatacaggtagaatgctctatacatattaaaaagaaaatGTAGTGCAATCCTTTTGTAAGAAACTCGACAGAATAAACTGACATTAGATTCAAATTTTAACTGTTTTTATTTTGCTTTTTAAGTAAGGAGTGGCATAAGT--CACCTTCTTAAAGATTTCTTTTGGGAACAGCCTACATGAAGTGGCACCTTGGGGGTCTT------------------------------------TAGATCCAAGTTCTAAAAATAATCTGAAAAATAATTGTGTCCCAGTAGAAAGCCTCAAGTCCTCTCAAGTTCCTCCAAAATGCCACCAAACCCCACTTGTTCTAGGTGAAGAA---TGCATATCCAATTATC------CGTTGACAGTCACTAGT----------CTGAAGCACATGCTAACCTCATTGGTTACCACGCATCATCTCTTGTAGATAAACTGTATTCATATGATAGGCAGCCATCCAGCTTGGATGTCTCTGAGCATTCCAATAGTATGAATGGGAAGCAGCAGCATAATACTCTTGCCATGCCCTGTAATACGCTCTCCAGTACTCCTCATAATCCTGGTAAGTATCAGAAAAACTTGCAGTTGTTTCCCTGTGACAGTCATACCAACTCTCTTCCTGGGGTTCTGACTGTACTCGGTAAGAAGAACGCCGTGCTGGGTTTCTCCGACTTTGCTTAGACCTTTGGTTAGCGCCTTCTTTATGCCTTGCCTTTACCTGGGTTTCAGGGGCTTCTTGATACTCCACTTGAGTCGGGGTATCATTTCCATTCTGAACTTGTTCCAGAGAGAGAGGGCCACCCACAGGAGTACATTCAGTGTCTTTCAACTGAGTGTCTGAGGAGCCTTCCAAGTAAGACTTATTACCTTTGCTCTGGGAAGAAGTCCTTGAGCTGCAAGAATCGCTGTCACTCTCTGAGTCTCCAGACTGGCTACTACTCACCAACATCTGTGCTCTATCTTCAGAAACTCTATTTCTCACAAAGCCATTCTGAGGATTCCCGGTCTGGGCCTCAGGCCCTGTGTAGTGCCGGATAATTTCCACAGGTTTCTCTAACCCCTCTTTAATATAGTGCTCATAATCGTCTACCAGTTCTGCAAAAGTCAAAGTAGACGGCTGATGGACTTTAAAAGAAGACAGACAAGGGATTTTAGGGAGTGACCCAGGTGAGCTATCTTTGGCCTGATGCTGGCTGTTACTGGAGGAATCCTCAACAGAGGTCTGAACAGAATTCTTAACTTGCTCTTCCAGCTGTGCGGGACAGCCCGACTCTTGTGGTGGAGCTGCCTTTTCTAGGACTCCACACTCTGAGTGGCTTTTCACAGGAAGCTTTGGTTTG---CTGTGCTTTGGCCTGGCTGACAGTGCAGATGCAGAAGTATTTCTAGGGGAAGGCGTTTGGTTCCCAGGCGTTCTTTGAGACTGGAAGGCTCTCTCTAGTTTTTGAACTTGCTTTTTGGGGGACTGAGTAGCTACAGTTGGTGAGCTGTAAGTATGCATGGCAGCTTTAACTTCCACATCCCAATTCAAGCATTCTTCCATCAGGCCAGGAGGAATAGGATCTATATAAAAGGAAGAATAAGA
s HiC_scaffold_1 116266784 2968 - 233722169 ATTTTTtgacagaaaaaa-----------gcaaacac-----aaaaataagaccaaaccaattaattttaa----aataggtaacTTCATTTCTAATTAAGCAGCAGCCATATCCTAATTAAAATACCCTAGCAATGACAAACTGTGAACATACCTGGATTATGGGGGAGaaggtaaaaaaagaa-ttaagttcaatTATATAGCAATGACAGGCTcttatttaaatgtgtaattaAAATCTCTACTACTTAATGACATACTGGACCTAATTATGGATTTGCTATCTATAGTGTTAATTTATTCTAACTTGGCAGTACATGTACAGGACTGGTACATATTAAGGCCTACTATTCACCAAGCCAAATGACAGGAATCCAAGTTAAACACTGTTTAAGACtacattttgaagatttttaaa-----------------------------------------cCATA----ATTACAATGGCTGTGGGAGTTTGCTAAGAGGCCTAGGAAAAAGT--GTTGATATTGCCTAGCCAAGTACGTATATAGCAAAGTActttcaa-----aaagcaaataaacgGTCCA---CATAAAGGGTTTTTTCACTCAAAAT-CGAGTTCACAGTTCTAGGAATCAAAGGACTTAAG----tggtaagaataagaaaaaaag-----aattatgatttTGTCT----CATAATTTATG---------TACCTCAGAAAAATGCTG-TCACACACACATTCTAGCACT--AGACATAAAAACTGGA-------GAAATTTTTCCAGAAGAGA-----CAAGATTAGGACACACTGTGAGATAAGTCTAAAA-GAATGAACTCCAGCTTCCATAAAATACTACTAAGAACTAGAA------------------------GAGTAGA------------------ATTTCAATTCTTAATCTGGGTCCCACACATGAGCTACGGAGGGTCTATGAATCCTTCAGAATT------ACAGTTCCATTTATGCAACGAGAAATTTTCTGATAAACATGTaacagtgatggcaaaacttttagagctttcaatgataaaagCCAGCTGCAGCATGCGTGCTacaggttcaccatcactgacctaTAACTTTTCATGCAATTCATAAAAGAAACCAAGAACCAACAAAGAGTGGAT-CCTCTAAGCAACATAAATATGGCAACCACTTATGATCCTTACCtatacacagtaaaaatataGACACCTTTCACAACCTCAAgaacaaaagacattaaaaagatgagaaataaacaTGTCAATACATTtgactaaatgtattttttactgtTAACAAATATTTCACTGAATGCAAACACCATATCAAGCAACTGGGAAAACATAACGCTTTTAaacattcctttctttttgatCCTAAAAGATCTACTGTGCCACAAATTTCCACAGGAATCTACCAATAGAGAAATGCAGTctaaagccaggtatggtgatgcacacccgtagtcctagcactcgggaggttgaagcaggag------gatctccaagCTTCTGAGGCAAAACtag-----------------------gcctgaactacatagcaagacctagtctc-------catgcaaaaaaaaagaaacagaaaaag--------------------------------------------------------------------------------------------------------------------------------------------------cagccCACAG-------------------------------------------------------TTTTTATGAAGAATTCtacaatataaac----attt--ttcaaa----acctgtttttatttt------taagtatgcaGTGGTATATATGATATCTTTCCAAATGTTTCTTTTAGGAACAGCTTATAGAAAATGGCACCTGGGGACTCTTATTCTAAGAGTTTGATGAAGTCTCTTAAAGAGGTAATATACCTAGATGACCaaataaatctgaaaaacagACATGTCCCAGTGGAAAGCCTGAAGTTTTTTCAAGTTCCTCAAAAATGCC------------------CAGGTCAAGGAAGATGGATATCCACCTATCAAACATTGTTGATAGTTTCCAGTGGTTTTGGTCCTG---TATATGTTATAATCACTGGTTACCACGCATCATTTCCTGTAGATAAATTGTATTCATGTGATAAGCTGACATCCAATTTGGATGTCTCTGAGCATTCCAATAATATGACTGAGAAGCAGCAGCATAATATTCTTGCCACGCCCTATAGTAAGCACTCCAGTATTCTTCATAATCCTGGTAGGCATCAGAAAAATTAGGATATGTTTCCCTATAATAAT------AATCATCTTCCCAAAGTTGTGCTTGCGATCGATAAGAA---TGCTTAGGTAGGTTTCTCCGGCTCTGCTTCACTTTCTGGTTAGAGCCTTCTTTATGCCTTGTCTTTATCTGGATTTCAGGATATTCGTGATATTCCTCTGGATTGGTGATGTCATTTCCATTCAGAGGTTGTTCCAAAGAGAGATAACCAGCCACAGGAGTAGATTCAGAGTCTTTCAGTTGACTATCAGAACAGCCTTCCAAGTATGACTTATTTCCTTTACTCTGGGAGGAAGTCCCTGAACTGTAAGAATCACTATCACTGTCTGAGTCTCCAGACTGGCTACTACTTGCAAGTATCTGTACTCTTTCTTCAGTAACTCTATTTCTCACAAAACCATTTTGAGAGTTCACAGTCTGATCTTCAGGCCCTGTGTAGTGCCTGATAATTTCTACAGGTTTCTGTAACCCCTCTTTAATATAGTGTTCATAATCCTCTACCAGGTCTGCAAAACTCAAAGTGCATGGCTGATGGATTTTAAAGGAAGACAGACAAGGAATTCTAGGGAGTGACCCATGTGAAGCTTCTTTGACCTGCTGCTGACTGTTGGTAGAGA---TCTGAACAGGAGTCTGAACAGAATTC---ATCTGTTCTTTCAATTTTATGGCACACCCCAGTTCTTTTGGTGACACTGCTTTTTCTGTGATTCCACACTCTGAGTGACTTTTTACAGGAACTTTTTGCTTGATATTATGTTTTGATTTGGCTGATAATACAGATACAGAAGTATTTCTAGAAGAAGCCACGTGGTTACCATTTGTTTTCTGAGTTTGAaaggttttctctattttttgaaTTTGCTTTTTCAGTGATTGGGTAGGTACACATGCTAAGCCATTTGCATGCAAAGCAGTTTTAACCTCCACATCCCCATCCAAACACTCTTCCATTAGACCAGGAGGAATAGGATCtacataaaaggaagaaaaaaa

a score=30368
s chr3           105680323 1125 + 160039680 CAAAAGAAACA--AACACATACCTGGTAAAGGAAGAAGGTTGATATTACATTTCTGAGCAATTTTCATCATCATATTTTCTTCTTCTCCTCTACAACAGTAGGTCACTGTCAGTCCCAATGTACCTAAGAGTAAGGAATGACATAGTAACTCATTTCCACAGAAACAACAC--TCCAAGTACCCTTCACATTAGTGTTCTTATTA----AAGCACTAAACTTCCTGTTCCTTACCAAAACGGCCAGCTCTGCCAATCCGATGCATGTAAGTCTCCCAGTCTAACGGCACATCGAGATTTACAACTAGATTCACCTTCTCTGCGTCAATCCCACGGGACGTCTTGAA--------GACAA--------TTGTTTG----------------------------TATTAATTACAGCATGACTAC-------CAATGCACACTATGCAATTCTGATATAAA---CAAAAGCCAAATTTAAAA---TGATCAAATAT-------------------TTAGGATTCAA-----------------AGGAAAAAGAAAT-CTATTTCTAGTGAG------------------------------------TAACTAGGACTAAA-------------CCTATTTC-----AAAG----------CAAATGTTAAACATTAAAC---ATATTTTTAAGAAAGCACTTTTCCCAGAACTAGAAAGATAACTTTTATCTCTGGTACCTGTTAGG--TACCTACATGAAACAGGACAGCAA---------TCTGATAACA--ATACATGCCAAGACCAAC-AGTCACCCAAACCAAGCAGGAGCTTTACCAAGTCTGTAGAAATGAGGACTCTGCAATGAAACTGCTTCAGTTTAGCCATAGCATCAAGGCGCTGATTCTGATTCATGTTACCTAAAAAGACCCCAACCCCAAAAAGTCACTTTAAAACACCTAAGCAagccaggaatggtggcacacacttgctatctgtcatcctaacactcaagaggttgaggtagaaaattccagagttcaaggccagcctagactgtaggattccatctcaaaaacatcaacaaaaACTTAAGCTAAGATATATTTATCACATCCACAATAAGCAAGAATCCTAACTCCCAGTCTTAAAGTTTTAAAGAAATATACCAACCAGTTAGTTAATTCTGTTCTGTGCAAATATGAGTGCTAAAATCTAAAGTCAGTATTTTTCAAAGTATAATTTAG----GCTATCAATTTGAAAATCAAAAATCAATTTTAAATGGCAACATTACAAAGTCTAACAA
s HiC_scaffold_1 116271867 1141 - 233722169 CAAAATGAACAGGAAAATGTACCTGGCAAGGGTAGAAGGTTGATATTACATTTCTGGGCAATTTGCATcatcatattttcttcttctccacGGCAACAGTAGGTCACCGTCAGTCCCAATGTACCTAAATCAGAGGGAGTGTTCGGTACATTATTATCAAATAAATGACATCTTACAAAAATCTTTTGTAAGATTCCTCATCTTACAAAAAgctatgaaactttttttttttaccaaaacgGCCAGCTCTGCCAATCCGATGCATGTATGTCTCCCAATCCAATGGTACATCCAGATTTACAACCAGATTCACTTTCTCAGCATCAATCCCACGGGAAGTCTTGAATTAAAGAAGACAAATACTTATTTGTTTGATTCCATTCACTTTATAATATTTGACCCTATAAGTCATAACATTAATTTTCTGATTCAATTCTCACCATGCATTTACACACTAAatgacaaattaaaaatttaaaagtctgatCTAATCTAAACCCTCTAACTTTTCCCTCACATTTCAACACCAGTAAGTTAAGTTATGAAAACTAATCACCATTCCTAATTGGAACATGGCTACTAATATACATCATACAGGTCTACTATAACCAAGAGCAAATCAAGACCAAGACCCTATTTATAGAAAAAGGATTTTCAttccaattttgaaaataaaaaccaaaatattaaagaca----tttCCCCAGAATTAGAAA-ATCATTTT-----CTGATAT-TGTTAGAAACACccacataaaataatatataaaatctgTACATTTGATAATAGAACATATGTCAAAATGGATTAGTCACCCAAACTGAACAGGAAATTTACCAAATCTGTGGAAATGAGAACTCTGCAATGAAATTGCTTTAGTTTAGCCATAACATCTAGGCGCTGACTCTGATTCATGTTGCCTAAAAAG------ATCCAAGAAAGTCACATTAAAACAAC------------------------------------------------------------------------------------------------------------------------------------TAAGCTTATACATATTTATCAAATCTACAAAAAGCAGGAATTATAACTCCCAGGCTGAACACTTT----AAATATACTAACCA--CCATTAATTCTGTCCTATGCAAATCTGGGT--TAAGATCTACAATCGGAACCTTTTAAAATATGGTTTAGGGCAGCAATCAatttgga--------------ttcaatccccagcatcacaaagaTAAATAA

a score=71684
s chr3           105682394 2187 + 160039680 TTTAAGCATTTTAATAATGACTTGATTATATTGAACAAAATATATCTCAAGACAATGAAGATAGAGTTTATTTTGTAGTATTAAGTTCTTTGCAAGTATAACTCAGAGATTTTAATTAAAAATTTAAGTATTTCTGATCACTGATTTTCTAAATTA---------TTACTATACACCAAGTTACTCCTTCAAAACAAA---ACATACACaaaaaaaagaaaaaaaaaaaaaaaCAGGAGATTGACATCAC----------------ACTCT--------TGAGACAATTTGAGAAGTGATATTTTTCTCTCATGACATGGAAGGCTTCAAAGCAATACATTAAACAAAAAC------------------------------------------------------------------------------------------------------------AGAGTGCTGAACTTGCCTGAAATGCATTCAGTAGGAAAACCTTTAGAAGAAAGGATATCAGCCAAATGTTGAGCTCTACAAAAAAAGAAAAAGATTTACAACCTTCAACTACTGCCCCATGCCCTAGTC--TTTAGGTTTTTTAAGTTCCCTAGATTAAGTTCTATTACCTGCTGTGCAAATTAGAAAACACCAAGGCTTGATTAAATGGGACTTTACTAAAAAGTTCCTGTAAGTGCTGAGTCTTTTCCTCAAAAATCTTATGAGCCAAAGGGTAAGAATTGACAACTTGGTAGTACTGCTTCAAACCTATAAAGAAGTCAAGAGTCCCAG-TTAAAACAAACAAGTGTGGTAAATTCCAATAGCAACTATGACATGGAAATAGCCAATCAGACGAGGGAAAGCCCCAGGACATCACAAA----CTAATAATGTAA---------AATCTATACACACCTATGAGACTTGGATCGCTGGGATTCAATCTTACAAAAGTGGGATCTCTCATATACCTTGTCAAAGCATTAGCCAAAACTTCAGGGTAAGTAGCAGATACTGCCAACATCTGCTTACTCGCAGGTAAAGAGGAGTAAATCCAACTGTAAAATACAGGAAAGCACACACCATGAACACACACCATGCAGACAGCACACACTACCGGGAAAGCTATAGAGAAATGCTTTGGTGCAACATTTTTGTATTCAGGC--------TAGTTTTCTTACTTTATTTGCTCCTGGAAACTGCCTTCTTCTAAAAGCTTATCTGCTTCATCAAGAATAAAGAGACGGATACTGCCCGGATTCAGGTAGTCAAGTTCTATGAGCTGTTTAATTCTACCTGTATGGCAGGA-AAACAACAAAAC-------------CTGAAATACTTATGACATATCAAATCTGTACAAACCTCAGG-AATGCTTTACAGTATTTATCCACAGGTTAGACTGCTTAATTTC----------CTTACAGTGTACCGTTACATACCACCTAACGGTCTAAGTAATCTTAAA----------GTCTGAATCCATTCTTTGTCCCCTCCC--TTTTCATCACCAGTAACTTTGGTAAACAAACATTACTGCTAATAAACAAACATTACTGCTACCAAAATACTTGAATGCTagctgggcgtgatggcacacgcctttaatcccagcactcctgaggcagaggcaggtggatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctatacagagaaaccttgtctcgaaaacaaaaacaaaaACAAAACTTGAATGCTATGGCACTGAATCCTAGGTTCTGATTCTGAGTGATTTGTGAGCAAATAACCAG-AGAGAACAAAAGA-AACCTCAATCCACGGCTTAAACAGGCTTCCTAAAGTCACTTCAGGTCTCAGAAGCTGATCCCATGGGTATTCTCCAACACTCTTCAGAATGGAGAGGAACAGATTCTGTTGAAAACCC-AGCCATGTGTCTCTCTGG-TCTAATACTCTTCC--ATTTATGCTGAAAGCAATTATCACCACCATCAAAACTCCCATTTGATTGGCATGCTCACTGTTCTAGTCTTCA-------AGAACTTCAGCTACCAAGAGGTCTTAATGACTTACCAGGAGATCCAACAGCAATATGACACTTTTTAAGTCTGGTTTTGTCTTGTGATAATGGAGTCCCTCCAATAAAGACATGACATTCTAATCCTTCCATTTTTATTCCAATGGCTGTGATAACCGAGTGTATCTGAACAGCAATTTCTCTTGTGGGAGCCAATATCAAAATCTAAAATAAATTGCAAAACATTCTAACAAGTCAGAG----GAATACATTTGAGTGGTACATCCATT------TGTTGCAATACACT-ACATTTTAAGAGATGAGTTTTAA--GACAAGAGAAAA--ATTCAGCTAACAATTAA
s HiC_scaffold_1 116273018 2134 - 233722169 TTTTAGTATTTTAACAGTGA-----TTATGTC-AAGATTAtgcctcttcagacaataa-------------tct------tTAAGTTTTCTGTGGCTATaac--agaggtttaaaaaaaaaa---gagtaatccT---------CTTTGTATAttagtttctgttttactatatACCAAGTTACTgcaaaaaaatatattaacatat-caaattcaaaaaaaaaaaaaataagcctgaAATTTCCATTACTCTTAAGATTCAGTGTACTCTCACAGGCATAAGACAATTCATGAAGTGGTATTTCTTCCTCCTGACTTGGGAGGCTTCAAGTCAACAtactaaatgaaaattaaagagatgggggctggggcttagctcagcagcacaagcgcctgcccaACAAGCACAAGGACAAGAGTTTGATCGTCAGttcccaaaaacaaacaaacaaaaaaactaaagagaTGAACTTGCCTGAAATACATTCAGCAGGAAAACCTTTAGAAGAAAGAATATCAGCCAAATGCTGTGctctataaaaaataatatgaaagtttattttataaagattGTCTTATGCCTATCTCATTTTAGCTTTTCTAGATAACTTT--TTAAGTTATATTACCTGCTGTGCAAATTGGAAAAGACTAAGGCTTGATTAAACAGAATTTTGCTGAAAAGTTCCTGTAAATGCTGTGCCTTTTCTTCAAAAATCTTATAGGCCAAAGGGTAAGAATTTACAACTTTGTAATACTGCTTCAAACCTA-AAAGAAATCAAGAGTTAGTGCTTAAAACAAATGTATTTGTTATATCCTAACAGCAACTATGCAACATCAATAACCACACAGGCAAAGGAAAACT--AAGATATTGTAAAAACACCAGTAATGTAAGTACCCAATAATCTGCACATACCTATGAGACTTGGATCACTAGAATTCAATCTTACAAAAGTGGGTTCTCTCATGTACTTTGTCAAAGCATTAGCCAAAAATTCAGGGTAAGTAGCTGATACTGCCAACATCTGTTTACTGGCAGGCAATGAAGAATAAAtccaactgcaaaagaaa--aaaacatatagcAC-AACA---ATTATTCAGACAAT-CATTCTA---GAAAAGCTAAAGATAGAAACTTTGGGGTATCATTTTTATAAtcaagtaatttatttatttttcttactttatttgcTCCTGAAAGCTTCCTTCTTCTAAAAGTTTGTCTGCTTCATCAAGAATAAAGAGACGTATACTGCCTGGATTCAAGTAGTCAAGTTCTATGAGTTGTTTAATTCTTCCTAAATtccagaacaaaaaagaaaacacacacagagacaccaAAACATTTATGATGTACCAAATTTG-ACAAATTTCAGCCAATATTTGAC----TCTATTCACAGGTCACAATGTTAACTTCCTGATTCAATTCTCACCATGCATTTATACTAACcacaaa------ttagaaattttaaattctgatctAGTCTaaaccctttattttttttctctcatttttcatcACAAGTA------------------------CACAAAACAATTACCATTCCTATCAAAAGACCTCAATGCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCACTGATTACTAGATTTTTATTCTGAGTAATTTATGACCAAAGGATTAATAGAAGCCAAAAAATAAACTCAATCCACAGCTTAGTCACATTTCTT---------------CTCAGAAGACTTTCTTATG--TGTTCTCAAATATCCTGAGGAATGGATCCAAA---ACTTTATTGGTTATTTTGGGTATATGTCTATCTCACTGGAATACTGTTCCTCATTTCTGCTCAAAATAATCATTACAATTATCAAAA---------GATTCATATACTTTTTGTTAAAGTGTTCACTTCCTAAGAGCCTCAGTTACCAACTGCCATCAATGTCTTACCAGGAGATCCAACAGCAATATGACACTTTTTAAGTCTGGTTTTGTCTTGTGATAATGGAGTTCCTCCAATAAATACATGACACTCCAAGCCTTCCATTTTTATTCCAATGGCTGTAATAACAGAATGTATCTGCACAGCAATTTCTCTTGTAGGAGCCAAgatcaaaatctaaaaatatgtaAGATACACCATAACAAAtcagagaaataaatacatatgattaGTACTTTCATTATATtgtgttaaaataaaatgatcactTAAATGGCGAGTTTTtactgacaagaaaaaaatattcatttaattaataa

a score=41405
s chr3           105686479 1333 + 160039680 CACAACTCACCGACGTGACCATCTAGTTTACTTCCCTAACTTGCATACGCTTTGGTCCGGCCTCTTCAAACT--CACCATCTGGAAGAGTTACTAGTTTGTCAC--GACTCTCAATAGAGTCACGTGCTACACACCCCCTTCC-GGATC--CTGAGTTAGACTCACCTGAGTACTATAGTTTTCAAGAATCAGAGAGTCCAGAGCAATGGTGGAGAATACACAAGTTTTTCCAGTGCCCGACTTAGCTTGGACAATTAAATCTGAGGAAGaaaaaaattatatatattacatattattaCCTAGATTTACTGATGCCACC---AGATACCAAATACGAGAAAGGAGAATGAAGAGGTTCTCTGCCATGAGGACCTAGTTGCCACCTGTATTTTTGGTTGACTCTCAAA-CGCGCAGGAGGTGTGCTTGATGCCCCAATCTCTTAACCACCGAGCTACCTCCCCAGCCC-TTTGCGCCCCGAATCTCTGCCGCTCACCTTCTCCAACTTGGACTCCA--------TGCTGGAAGAAAGTCCTA-----CCCTCAAATTCAACTGCGCGCCTTAGAGCCT------GGCTTAGCCCCGCGATGGCGCGGAGCCGGAGCTCTCCGGGGGCCA----CGCCGTCCCCTCCTTCCCCCCACCGCCGGCC---------------GGCCCCGGTCCTCACCGAGCCCGCAGCGCCCCAACGGGATGGCCTTGAGCTGCACCGGAGAGGGTCTCTCGAAGCCGGCCGCCCGCAGACCCTCCAGCACCGGTCGCGACAGCAGCAGCGACTCGAAGTCCGCGGGCTCCGCCAGCACCACGTCCCCGGTACGTGTGCGCGGCCCGCCGATGTCGTGTGCGGTCCGCTGGGTCCACGGGGATGCCGGAGTCGGCTCCACAGCCTGCACCGGCGCGGCCGCACGCTCCGCAGCCATAGTGGACTCGGAGGTTGTCAAGGCCGCCGGGACTTCAAACGCCGCCGCCGCCATGGTAGCCGCGCCTCCAGATCTCGCGATATTTAGACTTGAGGCGGGGCTCCTGGGAGCGAGAAGGAGAAAAACTTTATTGGCAGCCTCCCGGAGAAGACACGGACACGC-----CTGGAAGCGGAGGGGAAGAACGGAAGTCGGAGGCTGTCACTCTAGGAGGGAGCAGAAA-------AAAAAAAAAAATGTAGCCTGAGAAAGAGGCGGGAAGAGCGA-----GGGAAGATGAGGCTACCGGTGTGTTGCCGCCTGCGGCCTGCAGAGGGCGCCGCGTGCCCTTGGTGGGCGCCGCCCGCTGCCGGCCTCCCGCGGCTCTGAGTGCCTGGCCGCGCGGCGGGGCTCCAGACCCGAGCGCCCAGGACGCGCTTTGTGACGCAGCTCGCGAATCGGTCGCCGT
s HiC_scaffold_1 116277012 1272 - 233722169 CACTACTCAAAGACCttaaaatct--ttta------tatttttcatacagTTTAATTCAATTTAT-CAAACTACTTTCACCTG-AGGAGCCACTGATTGTTCACCTGACCCGTGGTAAAGA--------ATACGTCCCTTTCCTGGGTCATCTGAGCAGGACTCACCTGAGTACTACTGTTTTCAAGAACAAGAGAATCCAAAGCAATGGTGGAGAATACACAGGTTTTCCCAGTGCCTGATTTAGCTTGAACAATTaaatctgagaaagaaaaata----atatattactaGTAAGCATCT-----CACTGATGAAGCTTTGAGGTACCCATGTTGGCATGGG---------------TCTCCAGTGACCACCTAGCTAGCAACTCCATTTTTAGTCGACTCTCAAAACACACATAAGGCC------ATGTCCAGA--------------------------AGCCTGTTTGGTCCCTGAGCTTCTACTGCCAATCTTCTAAAAACTGGAACCCCCTTTTCACTGCTGGAA-AGAGTCTTAAATCATCTTCAAATTGAACAGCGCATCC-AGCGCCTCACCCAGGCCGAGCTGGGCACTGGCGCAGACACGGGGCTCTCCCGGGGCGAGTGGCAACGCCTTCTCAGTCCCCCTTCCTTGGGCTTCCCAGCCCCTTTTGGGGCCCGACTCTCACCGAAACCGCAACGTCCCAGCGGGATGGCCTTGAGCTGCACCGGCGAGGGCCTCTCGAAACCGGCCGCCTGCAGTCCCTCCAGTACCGGCCGAGACAGCAGCAACGATTCAAAGTCCGCCGGCTCCGCCAGCAGCACGTCTCCCGTGCGAGTCCGAGGGCTACCGATGTCATGAGCCGTCCGCAAGCTCCGCACTGCCTCTGTAGGTGGCTCCCCCTCAGAGGCTTGCGGGGCCACACGCTGCGTGGCTGCAGGGGCCTCCAGGGCCTCTGAGGCGGGTAGGGGTTCAAA---CATCGCCGCCATGGTACCCGCGCCACCGGATCTCGCGATACTTAGG-GCAAGGAAGGGCTTCTGGGAGC---AGGAAGAAAAACTTTATTGGTAGTCTTCCCGCTAAGACATTGACACGCCTCGTCTCGAGGTAGAGGAAGAAGACGGAAATCGGAGGCTGAAACAC---------GCATGAACGCTTACAACAGAGAAAATATTGCCTAAGGAAGAGCTTAGAAGTGAGAGCTGGGGAAAGGCGAAATTACCAGTGTGTCGCCGC----------CAGAGGGCGCCGCGCGCACGTGGTGGGCG------------GGCCTCCCGC--CTCCCAACTCTT-------CGACGATGCTGCATCCGTAA-----CAACGAGCACTTTGTGATGCGCATCGCGCGTCACTCGCCGT

a score=178543
s chr3           105693420 7007 + 160039680 [encoded data, 7291 characters]
s HiC_scaffold_1 116286232 6096 - 233722169 [encoded data, 7291 characters]

a score=383105
s chr3           105701216 22056 + 160039680 [encoded data, 25227 characters]
s HiC_scaffold_1 116292523 22518 - 233722169 [encoded data, 25227 characters]

a score=146904
s chr3           105725027 4856 + 160039680 [encoded data, 5500 characters]
s HiC_scaffold_1 116318025 5213 - 233722169 [encoded data, 5500 characters]

a score=133942
s chr3           105731730 10907 + 160039680 [encoded data, 12694 characters]
s HiC_scaffold_1 116323362 10637 - 233722169 [encoded data, 12694 characters]

a score=18938
s chr3           105745815 647 + 160039680 CTCAAAACTATTTAAAAAA-GCAATCCCATGACCAAGTTTGAAAGTTGTAAAGAT-TACTC--CCACGTGCACACACAGCTTTGCGTTTTACCTTTCTGTAGGAATCTTCTATCGTTGGGTCATATTTTTCAACAAAAATCCCCTGAACAAACTGAACTGTCTGAGAGGAGAAAACAAACAAACCAGAGTTAAAGACTTGAAAGAAAAATCAAATGTTCTTAAGTGTTATTTTACATTA-AAAATTGTAAAGAGTAAATGGAATTGTGTTGAAATTCTGGATAAAAA--CAAATGTAAATCATCAGTATTATATCCAGTAAGAAAGCACACATAAACTAAGAACACATTTATTACAAAAAGCGATGGTCATATTAAAAACTTGTCAATACTGCTACTACACTGCTTAACCATGATTACATTAC-ATCTTAAAATACA---GGGATACAGACAGCAAGATTACATAGCTCATTAAAATAT----ATATAATTTCCTG------------------------------------TCCAAAAGGAAAGAAACAAAGGTTCCAAA---------------------------------------GAATTT----------------------------------------TCAATTTTAGATTATAATCACATTTAAGTTTCACTTGTACCCCAGAAATA------CTTCCCATTTGCCAGCTGAACTTACAATACATCATCTTTCTGATTCTTTTTTTTTTTttttttttttaaaagacagggttt
s HiC_scaffold_1 116335980 751 - 233722169 ctcaaaactatttaaaaaaaggacTCCAAGGATCAAGTGTTAAAGATCTAAGGATCTAGTTGTACACATGTGTATACAATTTCACATTT-ACCTTTCTGTAGGAATCTTCTATCGTTGGGTCATATTTTTCAACAAAAATTCCTTGAACAAATTGAACTGtctaagggaaaaaaacaaa--------agtcattgacttgaaagaaaaatttgacCTTTTTGAATATTACTTAATCTTACACAGCAATAGAGATTAAATGAAATTGTATTAAGATTCTGGGTAAACACCCAAATGTAAAGAATCATTTTTCAAT---GTAAACA---ACATATATGTTAC-ATCACACATATTACAGAAAGAAGTGATCATGTTAAAAACTCATCCATATTGTTGTTGC------------TAGttactgtataattttaaaatacaatgaggATACAAA-AACCAGATT-TTTAActtattaaaacattaaaatgtaagtttttaatACCTCTTCATGTACCTATAGTAACTACATAGTGCtcctaaaggaaaaagacaatggcactaaatttttaattctttccaattgtgggaggaaacagaaaagggaatttaaatttatatgtgtTTGTTATGTTCTAGGGACTAAGCTAGTCACTTTTAATTTACAATCACAGTAAA--TTCACATTTATTCCATATGTAGCTGATTTTCCCATTTGCCAGCTGAAATTCAAATATACCTTCTTTTTGCCTCTAAAGTATTATTCTTTCCATTGGAAAGCACTGCTT

a score=27694
s chr3           105749898 1063 + 160039680 CATATATGCAAAAAGTAAATTTTATTCCATGCAAGCTTCAAGTCA-GGTAAAGGAGCATCTACTCTG--AGACAATCCATAACACTTTCCCCCAGTGGAATATACATTTTTCTGACAATAAAAATCGCATTCCACTTTGAATCACAAATATTGGTG----------------GCCAATAAGTAGCTGGCATACAAAAGTGTAAG--------------------------------------AAACTTGCCAGTCTAACG-------CTATACCTCTTTGGCTACAAATAGCAGGTTTATAAAGAACAATGCTTCATTTT-TCCTTACTGACTAGAAGCATGATAAGAAGCTACTATCCACATCCTGTGTATTAGTTAATACTGATTAGTTATAGTTGGTGGCTAACTTACCAGAGCAGACTTCCCCACGCCTCCTGAACCAAGGACTACTAGCTTGTACTCACGCATGATGCGCTCTGTTTAAATATTGACAATCTGCAAAACAAA--AAATAA----------AAAAAATTTACAA----------AACAAATTAAGAATGTA--------GCATCAAATGCAGGGTTTTGCTTTTTAATTTTTTTCCCTTTGGAA----AACAGAGGCTAT-GGGCAAAAATCATATAGTTTTCAATAATAGCTTTATAGGACCAGTCCCAGACTCTTTAATTTACTGAAGATGAGCTCTAACTAGGTATCAGTTGTTAAGCCTGTACATGTTACTTTGAA-GAATGACCAGAAAACAGGGC-ATTAAAATCAAC-ATAGTCTTAAAACTACAACCCATGACCCTAATCATTTGCAAAGGTATAATTTGGAGAGACTCGTGAGCTTT------AATATAATCGACATGCTACTTTACTTGCCAAAAA---AATACAGTACTTCTGAAATATTTTATTCATTGTTATTTTATAGCTGAATGGTGTGAAATGTCAGCTTGAAAATTCTTAGGATATAAACAGCAGAT----GAAAAGGCACTGTTAACATGTATCAACAGGGATTAGGAAACACTACCTAACATCCAAAGAGCTGCAAAAAATAAATGGATTACAAGCTTATCTTACAAAGTAAAAGCCAGAAAATAATTTCCAAtggttgatatggagtaacaaaggtaagacttttcaccctatagaaaactgcta
s HiC_scaffold_1 116340379 1105 - 233722169 CATATATGCAAAACATAACTTTCATTCCATGTAAGTTTGAGGTAAAGGTAGAGGAGGACTTATTCTATTATACTATAATAAAGAGTTTACCCCGGTATAATGTGAACTCCT-TAAAAATGAGAACAATCATACTCTTTGAATGAGAAACACTAGTGCTTGATATATAAAGCAACCAGTAAGTATTtggtaaataaaaaagtaaatgaaaataaaatggaaaaaaaaaagaatatgtgaaACAACACATCTCTGCTTAATGGATGATCCCGTCTCTTGTTGG--ATAGATATTAGgtatataaa----aatgtcacattttctccCTAGTTACTAAAAGTGTTA-AAGCCAGTAATgttaaatttctgt----taatatatACTAATTAGTTA-----AGTGGCTAACTTACCAGAGCAGACTTTCCCACGCCTCCTGAACCAAGGACCACTAGCTTGTACTCACGCATGATGTGGTCTGTTTAAATACTGACaatctaaaaagcaaaataaataaataaataaacaaaaaattaacaaacatcCTGAGAATAGCGTAAGCATGTACAACTATCACATCAAATAtagaattttgcttttt--ccttgatCCTCTCAAAGGAGCAACAAAGGCTACAGAATAAAAACCACGCAGTTTT---TAACAGGTTTATAGTGCTACTACCAA---TTTTAATTCACTAAGGACTATCTTTGACAAGACATCAACTGCT-AGCCTGTTCATGTTATTTTAAGTGTCTGATCAGAAAACAAGATGATTAAAACCAGTAACTGTCCTGTAACTATAA-TCATAAGCCCAATTCTTTGTGAAGCCATAATTTGAGCCATCTAACTACTTTCTTGGAATGTATAATGCACATACTATTTCATTTGCTTAAAACATCATATAATAATTC-----TCTTTTGTTCATTACTGCATTTAGCCTGAATCATGTAAAATGTCACTTTGGAAATTATTAGGCTATGAACAGGAGATCAGAGTAAAATTAATATTAGCAGATATCAAT---------GATGTATTTCATAAAGCCCAAGTTGctatagaaaataaa---------------------------------aggaagtaatTTCCAATGGCCATGATGGAGTAGCAAGGCATACACTTTTCAGACACTGGACAACCAATA

a score=24325
s chr3           105776830 858 + 160039680 ATAACAAATCAATAGTCATTTT--ATTTTACTTGTAATCTTCTATACTTTTTGATTAT--CTGTATTTACTGCTTCTGCAATTTATTACTTCATAAAAATTAACTTTTCTAAA-TTGACTTAAAATTTTCCA--TATTGCTCTAGTGCTTAAACTGAGAAATTATTATTAAAAGGGCAAAAAGAATGAGAGTAAAAAATGGGCTTCTACATATTACTAATACTCGATACTTTCCTGAAAGACAATCTACTTTTAGTTAAGAGTACAAAACATAAAAATGAAATCTCCCAATTTCTATA-AGCAGTGGAGATGTATTCTCTGAAAGACTCGTTAAATAATCCTTGTTATCATGTGGCCATTACTAATTAAAGTCCTATGGGTACTGACATCACAATACTTAATAAGGCAAGAATATATGGAA-AACGAGTAAGAAAATGGAAATATTTTAAGTTTTATAAAATACAAATGTCCATTATACATTGTAATTTTTGTATTATTTCACATATTTTAGCTCAAAACTAAATTAAAATTGTATATCTTCTTTTCATGCACTATCTATTAAATTAGTTTGCGATTTTACTGTACCTTCGGTCTTCAGGAAACAAAGTAGGCAGTCAGCAGGGTAAGAGCTATAGTGAAGCTACT-CAT-GGTTTGGTGGGAGGTCTGAAGTCATAATGCATGAATTCTCAAGCAAAAGCTGTCATTTGTAACTGTGATGCTAAGATAAAAGA-GCAGCTTTGTGTAAATACTTAAAATTCATGAAAGCTGTATCTTGTGCCAAAGCATGAAATCTTCAACTTGGTTAAATAATAAACCTCAGCCTATAAATTCACAATTAAAATGTTAGGTTTTTATAACCATTCCAT
s HiC_scaffold_1 116393036 798 - 233722169 ATAGCAAACTGATTACTACTTCTAatcttatttgtattctttctttcatttgtatttttgccTTATCTATGTCTTTTATAATGTATtactt-ataaaaatgaatttttaaaaaactgactcAAAGACTTTCAAAGATTAATACAGTG----AATCAGAAAGTAATTATACAAAGgactaataaaa-----------------------catttt-------tttgataCTTTCCTGATTAGAAGCTTACTTTTGGG-GAGGGAATAAAACACCAAACTAAGGTCTCCCAGCTTCTACGTGGCAGTGAAAATGTATGTTCCACCAAACTCATCAATGAAGACTTGTTACCAAATAGCTATTCCTAATTAAAGTCCTACTGGTACTAACATCACGATATATAGtgagggaaaaatattttaaataattaaaaataaaatgaatatactttAAGTTTTATAAAGCACAAATGTCTAtcatacatttaaa--tttgtaGTCATTTACA----------------------------GTA-----ACTTTgcacacattttcattttaaaaaatttgaaattttcatataGCCTTAGTCTTCAGATAATAAAGTGGGCAATGGGTTGGATAATA-CTGTATTGAAGCTATTACACAGGTTTGACTGAAGGCCTAAAATCATAATAAATCAATTCTCAACCATGAGTTATCACTTTTGGCTGTGATTCTGAGATAAAGGACCCAGCTTCatgtacatattttcaaagtgttatagttaaattttaaactaaagaataaaacctCCAACTTGGTTAAATGGTAAATCGCAAAGGATAAAATCAAGACTGAGATGTTAATTTTCCAAAAACATGAcat

a score=9596
s chr3           105780761 288 + 160039680 ACTTTTTAAAATTAGAG---------CCAAAATTAAGCTGTA-TATGAAAATTATACAGGCACACCTGCACAGATACCAAATATTTTCTATTTCTTTATTTAAAGG---ACTATAAAAATATTGCAGTTAAAATCTGGTGCCAATACCAAAAGAATGAAATAGCAGAAA-----------------------GATGA------------------------------------------------GCATATAAAGCATTTTCAATTCTTAAGTGATCCAGCGACTCTATCGCAGTCAGGAATTTATGAGACAGACACAAGCAAA--------CAAAGAGGTGGGAAACAAAAAGATCCTTCGGCAGAAGAAGGGACACGC
s HiC_scaffold_1 116394689 374 - 233722169 actttttaaaaataataaaactcttTCCAAAATTACATAGTAACATAAAAAATATACAGGCACATGTGCATACTTACAGAACATTTtctatttccatatttaaaagTATACCATAAAGCTATGATAATTAAAAACTGGTACCAATACCAAAggaactaaataataaaaaacataaaaaagacctgggcctaagatgaatgtaattattatgttctgcaaacatacttttttaaaaaaaagtctaagcACATGAAGTACTTCCAATTCTTAAATGACTCAGCAGTTCTATCACAAATGGAAATGTATGATACAGAAACAAGCAAAgatttttccaaaac------aaaacaaaatatccttCAATATTAGAATGGATAGgc

a score=25493
s chr3           105782717 1993 + 160039680 CCAGTCTCTAGAGATCTTCTACTCTAGTGTCTGAGAGGCAGTAAAGCCAACTTTT-GCTAATAAGAACAGCAGGAGTAAAgttttaagtgcttttcgtatttcgggcatacttatttaactttcagacatgcctaaagcttagataccattcatttttccattttgcaga------aactgaaaatgaaggaggtt-aaaaacacctaccaagtattacaTCAAATTTTTTGCCCAATATT----CTGCTGGTCACAGATA-CATTAT----GATTGACA-------CAGAATGAGACTTAGCATACCACTTAGAGGAATAAAATTAAGTTCTGTTAT-AAACAATTACCAATAAAGTGG--TGAAAATCAATGTAACTG-GGCAA-----TTACAATGATAAAAGTTTCCAGGGCATGCTATCATAAACACTTAAGACCTTTTCCGGATCTCTCATTCCCCATTTTCAGAAACTAGAAAGTCAATTTTGCT----------------------------------------------CCTGTTT---------AGTTTGACCACAAATTCTAATC--ATATAAAAATTCTCAT---------------------AATTCTACT---------------------------------------------------TCAAATGCTA----------------------------------------------------------TATTTATTAAATTATGT----AGTGTTTAACTAATTTTAT---TTAAGAACGTTCATCTTTAAAA---------TTAATTTCATACTCTAATA-AAATTCATATTAGAGCTTTTATTTTCTGAGTATAAAATATATAAACAGTATAATGGGTAAAGCTCCAAAAATAAAAGGTTAAAGGAATGTAATGa----gcca-----------agggatggtggagtgcatggctggact----gtcagcagcctggaggtac---aaggacctcc----aattcaggccactgtgagctacac---cac--gtgaccctgtgtt-------------aaaataacT-------------GTCCATAG--CCCCATGATTTGGAGGTAACAATTTAAGACC-TTATTTCTTTGTCTGTTGTACTCTGCACTAA----TACAAACTTCACACATATGGCCGTGAAA--ACCCCATAGGCACAGCTCATCTGCTCCTTCCCCTTAACAACTGACACTTTTTATGGTTTGCTGTACAAAAAAACCACTGTGGCTTATAGG-------------ACTAAAAACCTGATT----TAATACACTGTGAAAATTAACCACAGGATGGAAGGGAAGGGATGATGGTTCGTCTTGTAAAGACAACTCTCTT--ATTAGTATTTGATTGTTTTTAAAAT----AACTTTTT---------------CCAACTTA---------------------GGCACTTTTA------------------------GACTTTTTAAAGGTCTAAGGAGT------------------------------------------------------------------------------------------------------------------------GAAAACTCAGCCCAGCATACAA-GAACCTAAACAGAGCCAGCTAAGAAGACAATAAAGCAATGACTCTTTGTAGCCATTATCTAAGGCTTACTATTCCTTACACACACACACAAGCAGATGGTACTGAGTGGTGACAGGAGCTCAAGCTTGTTCTATTGGTGACAGTAGCCCAAGTCTAAAGCACAATGGGGACAATGGGACGACACAGCTTCTAAAACTGAACTTATCCACTGCTCTAAATGCAGGCTGGAGTTACAATGCTACTGAATTATAATGCTGATA---TTCTGTGTA-----AAAAGTGTAACATTTGACTAAAAAGACTAGTCAGAGGTTACTAAACATTTACTTAAAAGTC-AAGGCATGTTTTACTACTGAAGTCTGTCCTAAGGTTTAGAACTAAGTA-TCAAAAGACACAGGAATGTTTGAAAAGGAGGACTGAGAGGAGGACTTAGCACAGTATCACCGTGCCTGCCTGCTGATAGAAAGTGTGAGAGGATTTGTTCCTCAGCATTGACCAATTCTGAGCTTCTAAAGTTCCAGACTTCTTATCATAGGAATGCAAAAGAAACAGC---ATACATCT-AACACAGGGATAAAAGCAGATCTTAAGATTA----AGATCTC---TTTCCACATTACTTGCTCAAAACTTTCCATAAATTAATGACATTCTTACATTAATTAAACTTATGAAAGTTGTAT--CATTAAAATTCAGATATATA-GTTATATAGAAAATAATACTTGAATTTACATGTGAAAT-ACTTTCTGAAGAATGAAAACTTCATACCAAAAAGCTATATACCATTATTAAACCATGGGAGTAAAGTGAAAAAAACTTAGAATAAAATAGC
s HiC_scaffold_1 116397337 2355 - 233722169 CCAGTCCATAGGGATCTTCCACCCCA----CTGACAGGTGTCAATGACAACTTTTTGGCAACAGaaacaacagcaataaaatttcactgttttcttgTATGCCAAGCATACTTATTT----CTCCAACATGTTTATGAAACAGAtac---tggtttttttctcttacagatgagaaaattaagaaacaagGAGTTTCAGGAATAGCTGGTAAGTACTATATGAAAACTTC-GCCAAATATTTGGTCTGCTGACCACAAATAATACTATCAAAAAATGACCAAACATTCAAAGTGAAATTTAGCATACTATTTATATAAA-AAGGTTAAATTCTGTAATTGAACAGTTATtcaaaaatcagaatttaaataaatatcattgaggcaaatgagttaaaataa-aaagacttccAACGCAT------ATCAATAAtccaaa--ttttccctttttttcattGATCATATTCACATACTACCAaaacagtcttgctgtgtagttcaggctgttgtGGGCTTACTTGAACTcccagagattctcctgcctcagccccccagtgTCACCACA---CCTAAGCTAAAGtacaaattcttattttcttgaTCTATTGAGATagagttttactatgcagttcaggctggccttgaactcagagcgatcctcctgtgtcagcctctcaaatgctggaattacaggagtgggCCACCACACTCTGCTAAAGCACAAATTCTTAACATATAATTCTATTTACTGATTCATGTGCAAAGCTTTTAACTCATTTTATCTATTaagaattttcttccttaaagctttaaaacttaatttcatattttataatgaattaattttaGAACACTTATCTTCTG--TTAACAATACATGAACAATGTA-----TATAGTTCATAAAGTATAAGgcttaaaggaggaaataaaagtgCCAGTATACCCACTATTGAAGATAGGTCCTTTTGGTGTTATCTTAGTCTATATCCTTACAATACTAAACAGATATTTGTAAAATACAGG--AGTGAAAACTACACGAACACTGGTAATCTGCTTTTTTCCCTTAACACAAAAATACCTTTTATGATTGatcatctataaaatattttggtttaaagg----agtttaaaacaacttttttgctgtgtgtttttgtttgtgacaaggtgtatatagttcaggc---tggccttgaactcactctgtagctaaga------------ttggccttaa--actgaccatcttcctgcctcagtctccctaa----tgCTG-GgtttaaaggcatgtgccaccacacctaaaAC--AATCACAGTattatattctgaaaattaaCCATATAGTGGGAGGG----GATGTTGCTTCTTTATATAAACAGCACTTTCTTTTACAAGTATTTGAATGTTCAAAAagtcattagttttttttttgtaccagggatcaaactcacgacctcacgcatgccaggcaggcacttatgctgctgagctaaatccctggccctaaatttttaaaaattaaacaggtaTCTCTGCTGCACTATTTAAAAACTTCACATGTCCATTTGCATGTCAACATACAGGAATATTAAACACATGGTTATGTAAGTATTATggctgaaaaaaaataaaactgtgacaATTCACTGTAAGCTCAGCCCAGAACACGTTGAATCTAAGCAGAGCCAACTAAGAAACCCACAAAGCAATGATTCTTTATACCCATTATCTAAGGTCTACTAATGCTTACACACACATGTAAGCAGATGGCACTGAGTGGTGACATTATGTCAAGCTTGTTCTATTCATGACAGTAGCCCAA-TCTAAAGCACAATGGGAACAGTG-------ACATCATCTAAAACCTTCCTTATACATGGCTTCAACTGTAGACTTATAT----GTGTTCCTGAATTATAATGCTACCAAATACCAATGTACCATTACAATTTTAATATTAGAGT-GAAATATTAGTCAGAAG---ctaagcatttatttaaaattcaaagggATGCTTTACAACTAGCACTTATCCTAA-GTATAAAATTCAGTATTCAAAAggcaaaggatttttt-----------tttaaagg-------------gtatTACTAT--------------------------------------------TTGACTATGGCTGAATTACTGAAATCTCAGA---CTTATCATTTGAAGGTAAGAGAAACAACTCTGaaaatctaaacataaaaatacaaaggggTCTGATGGTGATCGTAAAACTCACAATCCCAAATCACTTATCCG-----TGCCTTAATTTA---ACATTcttaaa-taattacatttataaaagtCCTACTACATCAACTTTTAGAGATACACATTATAGGGTAATTGACATGTACA-TTACATGCAAAACAATTTTCCAAAGCATGAAAACCTTATACTCTAGTTACGTATTTCATTATTAAAC--TGTGATCAAAATGAAAAG----TAGGATACAATAGC

a score=30398
s chr3           105794516 2790 + 160039680 CAGATTAGTTGGAATAGGAACTACATTTCTCAGGACAAAAATCCCCTAA--GTCTTGTTGCCAGGTTCTATTATGTCCATGGTTACTTTTAGATTGTATAAAGGATGTTATGTGAAACTCAATAGTATTTATGATGCTACACAAGGCCTATCATTTAATGGACAGCCAAAATCCCAAAAGAAAGCACCACAGTTAAGCAGATT-TTCTATGTATGACTGATGAAAGTGAATGTCAAATTAATCCAAAC-----TCACACATGCAAAATAGGAAAACCAGAATATCTATCCTCACTTTGCAAACTAAATATACTATTATTTC----TTATGTCAATTAGGTCTGAGAAGGAAGAAATTTGAAAATAAACCTGGCAAGTTCCTAGAGTTCAC-TAAGAATACAACCTGATATATGTTTTTGGTGTATCCGCATATCCATCCATCCTAAC----TAGGT-ATTTTAGTGACACAAGATTATTTTAATTTATGTGGGAAAAATATTAAAAATCTGTTCTACAAAAAAAGAAAAGAAAAATCCCAAATCTTGACATTAAACATAAAATTAAAACCAATAGCTTAACAAGGAAACAACTCCAGTATATTGTGTGTGTGTATTCAGCTACATCACAATCTATAATTTTTATTTTACTATATTTTTGACAACTAAGAAATAGTATTTATGAAGCTGCTGTATTTATGAACAGACAGACAAGTACTAAAAAGTAGTACTGGTTTAAAAAAAAAAGAAAGAAGAAAAAGAAAACATGAAATACTACACATTTACATGTGTCCAACAAAGAGTTTAATTTTGACTCATCCAACCTTCTCGGCTGGgagtttgatccttgagaactgcatggtggaaggagagatccaactcctacaagctgtcctctgacatccacacatgcatcatggcatgcacataATAAAAACAGAGATCATAAATATGC--GGAGTA--AAAAACCTTTAAggggctg----------gagagatgctcagagtttaagaatccttagtacccttccagagaactagagttcagctcccagtacccatgcaatggccattg-accatcataactctagttccaggggatgtgacaccctcttctggcttattcaattagacactcgtttggtacacagacaaacacacaggcaaaacacccatacacacataaagttaagtaaaataaa---------ATAAATTTATACTTAAGACACTGGTTCAATGTTAGTGAACCAATGGTTCATGAATG----TATACACGGTTATCAATGTATACAT-GAATATCAATGGTTTATGAAAGTATACAATACTTTTACATTTGAACTGAAAGGACAGTTTCAAACACATTCAATAGATTTGTGCTAGATTATAAACTACATAAAATTCTAAAATTAGTGCTAAATGTTAACTACTAC---------------------------------------------------------------------------------------------------AAGACTTAACATAGAACTTGCTGTCTTAATGTTGCATTATATCATCAACCTATCTGGAACAAAATGattttatttataagtaaatttaaaaataCCACTGAAAATACAGTGACTGAATGTGCTCTGCAGTCAACATGTCTGGCAG--------------CCTACATTAAGAGACCCCCTACTATTCACTTGTG-GCAGCATCAACACCA-TCAGGCTCTGTCCAACAGCTGCACCTAATTCTTTGTACCTCTGT----AGTTTCACCTCTAAAAGCTAAACCACAATCTTATCCTGAGCAAAAATATTTTTCACTTGCACAATAAGTCGTTATAAACCAGCACTGGAAATAAAAATCTGACTAAGGggcttagtggttaggaagactgactactcctccaaaggacccaggtccaacgcctagcacccacatggtggatcacaaccaggcacaactccagccctgcggatcagacgtgttcttctggcctccttggaaaccaggcatacatgtgtatacgaaggcaaaatacatatgtacataaaaAATGTGAAGGCCATAATAAGTAGCACACTTGATAATAAACTTTTGGGTTCAAAGTGAGGCCCTT--AATTGTTAATTAATTCAAAAGTG-GTTTTATCAGTTATTTGTACTTTAAT--------ACTCTTAGGGAATAGGACTACACTGTTTTCTGTCCTTAGATCAAACATGATT---TACATGCTTTAAGTTTTGTTCATC-----------------------CTATCAATATGAACTAAATAAGCTAAAAAAAAAAAAACTGGCAAAAATTAGAGTGACTTACAAAAAGATTCTTTCAGATTTATCTACAGAAAATTGATATGCTCTAAGTAAGT--TAAGTACTCTTTTAAAAAGTCACTCACTT-------------------------------------------------------------------------------------------------------------------------------------------GTATAATAACTAAAGTTTATTTCATAAAACAG--TTAATTTCCCAGGTGTACATCAGGTACTTCTGAAAATAATACTAAAAGGACTATTTTTATTCCTCTTATGAAAGTACACCATTTCTTATTTTAG-TTTTACGTTAGTAAT--CACACAACTTCCCTTTTTAT-ATTGGTGCATGTGTGAGTGCACA---TCGGACCCCTCACTCTGAAAGGCCTACTTTCAAGAAGAAATGAGAGCACGGCACAGTTCTTTGCTGAACTGCTTGGCTGATCAGAA---CATAATAATGAATAAAGCTAACCTTATATGTTTAATACTCATTAGGATCATTTAACTTTGAAACAAA--------TTAACCAGTCATCTCAAAACCGTGTGCCCAGGGAAGGAAGGCCAA---------AACCCCTCACTGTGTAACCATAACTGCTACTAC-AAAAGACTCAAAATGTAAATTAA-------GTATATGAAATTCTAAAAGGCACATAAAAATTACTACTTGTGA-----------TATGTACACGCACAGACATACACAAAGGATGCTTTGACCTCCTCTCATTAACATATAAAAGGTT
s HiC_scaffold_1 116407919 2662 - 233722169 CATATTACTTAGAACAGGAATTACATTTTCCAGTGCAAATACTTCAgacttgttttgtttccattttctattatGCTCACATATTCTTTTAGGTTGTTTAAAGAACATCATTTAAAACTCAGTAGTATTTGTGAAAGTATACTAGACCCACTCTCTAACAGTCAGTCAATGCCCCAAAAGCAAACTTCACAGTTAAACaaattgctttatgtct-actaaTCAAA---AATGTCCAATTAACCCTAATAGTAAACACAATTGCaaaaaag--------------ttacatttattttGCAAACTAAATATACTATTGTTGCATGAATAAGTACATCAGGTCATGGGAGG--GGAGCCTGAAAATAAAACTGGCAAGCTACCAGCATTCacaaaaaaatgcattttgatata----ttttgtctATTCACACATT--TCTGCCCTAACTTTTTAGTTAACTTTAGTGGCACAGGATGATTTTaatcatgaagaaaaaaacatgaacaaaCTGTTCTACAAAA-----------------CAATTACTGACATTAAAC--AGAATTAACACTACTAGTAGAACAAGAAAAC--CCTCAAGATA------------------------------CTATAATGTGTataataccatatat----------atatata-tatgtatg----------gttTACAAA----------------ATAGAAAAGTATTGGACTGGGAAAACTAGGCAGTAGAGCAAATAAA-----------AAACAGTTTTTGGTG--------ATACTGCAGATTGGACTCA------------------------AAGCCTTG-----TGCATATT--AAGTATATACTTCACCACT--CAGCTACC------CACCCA-GCCTATTTACTGTTGTTTAAATAAC-----TGGCAAACTTACTTATTCTAGTAGTACTAAAAACCTGTTAGGAAATGAGACCACAAAAAAAGTTGTTCAACAACTAAGA--------CACAATTCAAAATattcaca-ttcattt-----tatttagaaaatgagtATTGTTCTATTTTTACTCTA-----------------------------------CCATGAAAC----------TacatttataaaaacatatgtcaAGCTCTAgcacacata-----------aaaataaactattgtttataaattt---cttaaaatagaaaCTACAAATTTGTATTTCAGT-GTCCATCAATAATCTGATACATCTTT-TCAATGACTGAATCTAAAATCTA---TCAATGAAATTATACAATA--TTCACAATGGGATTTAAAAGGTAATCCCAAAGGTATT-AACAGATTTGCAATAACGAAT-AACTACACAAAATTCAACAATTACTGTTAAATTTCAAGTGCTACAgagatgattttatttctttttggaaccagtaatcaaactcacaaccttgtgcttgctaagtaggcacttgtgctgctgagctaaatctctggccctataAGGATGATCTTAATAGTTGCTTTCTTAATGTTCTATGGTATAGCCAACATGTCTAGAACAGAATGATtctatttataaatgaattttaaaatagcagtg-aAATACACAGAATGAA-----TTTACAACCAGATTATACGACAGATGTGAAATGTTCATCTGCAGTACGATATTTCCTACTACTGACTTAAGAGTAGTACAAACTGCACTTGGGATTTGGCCA--AACT----CTAGTTCTCCATGCCTCTCTtgacagttttgtttttggtagctAATCCACAGTTCTACCCttagtaaaaa-atttttta-----------------------------------------------------------------------------------------------------aacatctag-----aCATAGT-----------AGGTGTGACTCCTGC---------------------------------AAACAACAGGAGTA----------------------ACATATT------------------------ACAGGTAATACAT----------ACTTGTAAGCTCAAAGTAAGATCCATCAAAATTTTAATGAAGCTAACCATGTTTTTTATCAGCTATGTGTATTTTAGTATATCCTAATTCTTATGAAATATGGctcaatttaaatatattctgaagTCAAACAGGGTTGCATACCTAATTTTAAACTGGTTAACTGTGCTATTCTATCCTTTGAATCACTATTGATGTGAACTAAATAGGCTAGAGACAGAAAACGCTGGAAAAATTGGAGagatttatac----tttattttcaatt--tcaacataATCTT-ATACAGCCTAAATAAgtcataaatgctttttaaaaagctctttctttttttctgagacaggatctcaaggCTGGTCTTTAACTTACTATGTATATcctaggctgaacttgaactcaggctatcctcctgcctcagcctccttcagtactgggattacaggtactgCCTACCACactcaggttcaaaagtttaatGATTGAAGTTTATTTCATAAAACAGAATTAAACTTCCATGTCTGTATCGTGTACTTCTAAAAGTTGTAGTAAAAGGATTGGTTTTAGGTCAGTTATAAAACT--ATCACTTCTTGCTTCAACTCTTACTTTACTAGTGacacacaatttcttttttttcaattggtGGATGTAT--ATGCACATGTTTGTACCTATTGCTTTTAAAAGACTTATTTCTAACGAAAACGAAAGCATGGCACAATTCGCTGTGGAACAGTTCTGATGATCAGAATatcatgataaagaacaaagcTAAGCTCATA-----GATACAGGCTCAGATCACTTAATCTTTAAATAAACTGTCCTCTTAATCAGTTATCTCAAAATTACATG--------AAGCGTACTAACACAGTGTGAATTGTTCAAAGCAAACCCATCATCATTACtgcaaaaaaaattatactgtGAATGAACTTATATGGGtgtgaaataatgaaaaacac---cAAACTACCACCTGTACTCCTTAAATTTTATGTACACACACAAGCAGACTCA--------TCTG------TCTTAGTAATATatgaaagttt

a score=97940
s chr3           105797317 7833 + 160039680 [encoded data, 9788 characters]
s HiC_scaffold_1 116411030 8866 - 233722169 [encoded data, 9788 characters]

a score=36731
s chr3           105805151 3787 + 160039680 TCATACTGCAGCTCATACCCAGAGC----ACTTTTCTTTCCTTTAGAAGTCCCACATTTTCTGTTTGTATCTCACCTATGGCCTATGTAACTGCCTCGGGATATATTTTACTTTTTCATTTTCTTCCTTTTTTTCCTTGCTACTAAGAACCACACCTTTCAGTGAAGTAGCACTCACTGCGGTGTGAGCCTTACACCTTGTCGAATGAGGGACTCCTCAAAGAGCCATAGAGTGAGTGACACTTTCCTGAAATCTAAATGAGGACATCCGGGTCTAGCACTAACAGAAACCCCACTGCTCTCAGAGAGAATGTCTTTAAAGCCTAAACAAATTTGGCAGTATGAAATTATTTCTTTTCATGTTATTGCTGGTGGAAAAGATCTTCTAAACGCTTCGCAAACTTAGCATACTTTCACAGTGCAGTTACAGTTTGGAATCCTAGAGTGCGTGATCAGGCTGAGACCTGGCAGGACC-GCAAAGCTAGGTCCAGGACCAATTTACGGAAAAGGTCTTTAAGAATCATTGAGACTGTGCTACAGATCAATAGAAAGAACATTTCATCTTTTGAGTGTTTACAGGATGTATTTTTATAGCTTCAACCCTCAGAAACACATAACCCAAGAGTAGCGTTGCA-----TCTGTTCAGCAGTATCTCATGAACTTTTTCTGGTGCCATGTTAGAGTTTAAGAAATTGAAAAGTAGGAATGTTACTTTACTAAGTAAATTAACATCTGGACTTgatcaaactaatggctaggcgtgtagtagggaagtactataccattgacctacccccagcctcAGGTTGATATTTTATATGCAAAATGTAAATTCTTTATGTATATTACTTACACACATAGGACCTCATACACATTCACTCATCAAACCTAGACTGGGGCATGCTGCTCGCTAGGGACTTACACTT------GTTGCTAAGAATACAAAGATATGGTCCCCGTGCT----------------AAAACATTATGACCTGGCG---------------------------------------TTGGTAGGCTATCA-------------------------TTAATTTAATCCTATCAGTAACAATATTAAATAGATTGTAGTAGGTTCATTTTGCAGAGGGGAAATTTTGTTTAGAGGGATTGAATGCATTGACAAAATACTCAGTTTTTAACAAG--GCCTAAAACGTAAGCCATCAAAACCTGGGTAGACTAAAAATCTAAGTT----CCGAAAGGCAGCAACTTCATCTATTTTGTTCATCTCTAT--TTTCAACAAGTATTCAAAGAGTGAGGgggggggtgccttctcagttacagcactcgttgctctggcagaggaactgggtttgaatctcagtacccattggcagttcccaaccttctgtaattccagctccaagggatcggacaccctcctctgttctcatgagtaccagggattcccgtggtatgcattcacacatgcagacaaacacactcatacatagagaataaaaTAATATAATCTTTAAAATTCAAGGTCATATATTTATATGTGGAAAAAAGGAG-------GAGACTATAAGGCAGCTAATTTACTAGTCATGATCCTCTTTCTGCTGTGTGGTACAATAATAATCTTATCCATACTAGT-Ttacttaaagggtgctccatagattgccactcatctgcaaactgtttattactagtgaactttgagtcattgttgtgcaaaagaacgtgtaatcatttagaatctttcccagc-----tgtgacaatgtcaagtc-aagcaagtgatctgtgggcttctgtggttgaacctgggcacaaatcagttcaggtgttgtccaactcatgtggtgagtcacaagtggtgtgtgctgtgtgctagtcaC--AGCATCTAATTTAATCCTACC---CAGGCCATTTACCACCCACCTGCTCCTCCCCCTGGAGAT----------------------TGTTTCATGCCTTTGAAGTAAAAGTCAGCAGCAGATT---GGATTTTTAAAAA-CTGCTTCTTCACCGCAGACGCCGTATCTACCGACCTCATGTTAGAGAAGCGCTGTTGAGCagtaattaagtgtgcggctcctagaatgagtcgacgtggctttcagtgcagtgcgggggtctgtcagttaccagctgtgtggccttgggcaaattgcttaacctcatgaaacctcagcgttcttacctataatatgta----caacaaaaatacaaaatttcatagggCCTTAGTAAAACCTGAGATATACAAGGCACTCTTTTGATTAAAAATAACTAAGAGAAATACGTAATtttttttgagacagtgtctctctatcatgcagtcctggctgccctacaagcttgctatataggtcaggttggcctcagacacctgagtgctgggattgaaggtgtgtgccatcacattcgactTAAAAATACTGAGAGAAATATATCAAGTGCTGATCATAGAAAATGACCTACAATGACAAAATGCCATTTTTATGTCATAATATACATGACCATTGCTATTTCACTTGGATGTCATAGAAATTCAGGCTATTTGGAAAAAAAAAAGATTTTAAAATCCGTTCAATCAAGGTAATTCTATAACTATCCAGGAGTGTGTATAGACACTCTTCTCAGTTATCCACACTACAATTCACATAAGCTTTATTGTTAAGAACAACAACAACAACAAAACTTGCAAATAAAATAATCACACAGGAAAACTAACCAGACCCAAAGGGTGTACATTGAGATATACAGACTTTTTATCTACACTAGTCAAAGATAATAAAGATCAGTTACTTCCACAGTCCTCTGTGCT-TGTTTGTTTTAAATAGATTGTGTATGATATCGAAGGGCAATACATTTGGCTTCTAGGTGGCTATTAAGagctgtgtgtggtgactcacatctttaatctcaggactgaaggtcagacatgagacagaggcagttctaaatcatcctcagctacttatgagtctgcactt---agtct--------gtactgcatgaaactctggctcaaaacaataCAGCATAAAAACACAGTTTCTGTTTCTCCAGCT-GCATTGTCCAGGTGGTATAAAA-AGCCAGGCAGGCAGGTACACAGTGTGTGCTG------AATGACAGGTACACACAGACAAGTCAGAGTCGTTTGTTGGACTGGAATATAGTTCAGTGGTTGTACAAAACTTGTGTTC----------AATCCCCAGAACCGAAAAATAAATATT-----------GCTTATTTGGTGGCATGTATTTTGCCTATTGATATGtttttttaaaataaagatttatt---tatgtattttatgtatatgggtacactgtagctgtacacatggttgtgagctatcatgtggttgctgggaattgaactcaggatctctgCTCACTCGGGCCCCACTCGATCC---------------GGCCCTATTGA------------TATGTTTTCTACCATGGATTTTTACATGC-----TCGATCTGTTTC-----------CGCTGAGCTTCAGCCTATCTGGTCGTTTGTCTTT---------CCTCCAGTGAACCTGGTTACCTGGTCGG-AGCATCTATGTACATGAGCG-------AGCTCCTAAAAGGAGTCAAGGACTCTTGCAACAAGCAGGCTAGACAGTGATGAGCAGCA-----GCAGGCAGGATACAGCTGGCCTCTGCAGAGATAGTCCAGTGTAGGGAGGGGA-CAGACTGTGCCAGGAGGAAGCTAAG-CCTTGCTTATCAGGAACGACAAGCT----------TGCACTATCAGGGAACAGACAGTTACCAGGCCAACCCATCCCCCCCATAAAGGGAGGGAAAGGGAATCCAAAAGGGTTTGCCTAGTTTCGCAGAGGC-ACCTAGCATTATTTATGCTGCAGCAAAATTCAAGCACATGTAAA---CTGCAAATAGTCCCAAT-------CACAGGGACTTGCTGTAGGCAGAAGACTGTGG-TAAGGTTGCTAGA-TTAACAATGAAAAA
s HiC_scaffold_1 116420788 3038 - 233722169 TTGTATTGTAGCTCCTACCTGGAGTTTAAAAAATCCTCTCCTCTC-AAGTCTCTGCCTATCTGTGTATATCTTACTTGTGGAGAATGTG-TTGCCTTGTGGTATATTTGGTATATTCATTTTACTC----------TTATTACTAAGTATCACTCCTTCCAG----------ATTACTGCGTTATAA-----------------------------------------------------------------------------------------------------------TTACCCTCAAAGAGCATGTCTTTAT--------CCCATTTgctattatgaaattattttt----gtgttactACTTCCTGAGAATTTCTTCCCAATGCTTC--AGacttaggatatttttaaaattcagttgtaACTTGTAACCCTAGAGAGTATAGGTGTACTTGGACCTGGCAAGACCAGTAAAGCTACTTCCAGAATCAACTTATAGAAAAGGTCTTGAAGAAGTATTCAGATTATAATATAATTCACTACAAAGAGCTTTGCACCTAATACATATTTAGA-AATGTATATTTAGATATT--------AAAAATCTGTAGT----GAGTAGAATTTTATATCCTATACTCTGCCGTACCTAATGTACTTTT--------CTCATTGGGATTTAATAATTTGAGGAacag---------------------atgaa--------------------------------------------------------------------------------atattttaaacaagaaatGTG----CTTCACA--------------ATACAAGATCTTAT-TACATTTATTCAATAAACCTTAACTTAGGT-TTCTGCTTACCAAGATCTTACCCTTAGAGAGGATACAAAAAATAGGAAGATATGGTACCTGCCCTTAAGaagaacacatgaaaaaaaatatgacCTAGTGAAAAAAATATGACCAAGAACTCTGCAgttctaaaaatgatttttagactctaaaattctaaaaatgtttcACAATATCTTCATTTAATCCTACAAAAAACACTATTAATTGATCAATA--AGCCacattttaaagagggaaaaacttGTTTAGATAGATTAAATGAGTTGAACAAA-----AGACCTTAACATATTACCTGGACCATTGAATATCAAAA-CTGgttgaattaaaatgttaaattgttCCTTGAAGGCATGTACTTGATCTGTTTTGTCCATTATTATAGTCTCAGTAAATATTCAGGGAaagag-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tatgtgtgtgtggagagagagagggagagagagagaatatacaAACCAGTCCTCCAATC-CATTCATTATTTAATTGTGTGATAAACTGATG---TTATCTATATTAGTACTACTCAAAATGTGGTCCACAGATTGTTGCTGATTCACAAATTGTTTCTTACCAGTGGATCTTGA-----------------------ATAagcatttaaaatcttttttggcAACTTGGTGTTGCTGTACTTTCTAAGCAAGTGATTGGTGGACTTGTCTAGTTGAACCTGAGCACAGACCAGTTCAAGCATTGTCCAACTTGTGTGGCAAGTCTTATGTGGTATACAA-GTGTACTACCCACATAGCATCTAATTTAACCCTACCATTTAAGCCATTTGCTACCTACCTGCTCTTCCTCCTGGAGATTCTCTGTGTTTCACAAAGAGAATGCTTCATGCCTTTGAAG-AAAAGTCAGCAAAagatttgagaatttttaaaaagctatttcttCACCATCGAGGCTGTGTCTTCTGATGTTATGAGGTAGAGACATTATTGTGCCATAATTAAGTATATGGTTCCT-GAATGAAAAGATATAGGTTTAATTGAA------GACTCTGCCACTTACCAGCT------CCTTGGGCAAATTGATTACCTTCTTGCACTCTCAGTAATTTTATCAACAATATGTAGTTTTTAGAAAGGTACAAAATTTGATAAGGctttaattaaa-----------------------------------aactaaaataatgacATAAGATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGAACGAAC--ataattatgaaatattatttttatgttgtaaCAT-------------TATTTTATTCTGGGATCATAAAAATCCAtgctatttg--------aaaaatttttaaatcttcacaATAGAGATAAT---------------------------ACACTTTT-----------------CAGTTCA------------------------------------------------------------------------------------------------------------------TACActgacaaaaatcaacaaataactgCCAATTCCAAAGTCTTTTatactgtatttgttttttaatgtgtGGGTATGATCT-GAGGGACAATACATTTCACTTCTATGTGGCCATTAAAATCagttttggg---------------------gggctggggatttagctcatggcataagca--------------tctgc--cttgcaagtgtgcggtcgtgagttcgatccctggtactgatagaaact------------aaaaagacaaaaaaaatcagtttttggTTCTGCAGCTCAGGTTATCTGAGTGGTGCAAAGCAGTTA---AAGCAGATACATGGTGTGCATTGCATCCAAATGACA----------------TTAAAGTA------------GAGAaatagctcagtgct-----agagcatgTGTTTACCACATGGGAGTCCCTGGGTTTGAGCTCGAGCTACTCTCCACCCTGGAGTTTTTTGGTGGCATATATGATGGTTACTCACATATTTTGT----GCTAAGCTTTATCCTGCCTATCCTTATCCTTTACggttttcttctcctcctcctcttcttctttttcttctatcttcttcc------ttttcctcttcttcttcttttcctc--ctcctactccttcttctttttttgttttgaggcatactgaccttgaattcactatgtagcccaggctggccttgaacttgcaaggatcctcttgcttcagcctcctaagtgctgggattacaggtatgtgccactgtgcctttcTGCCATTCCCTCCTGCAATCTTTATCATATGGAAGGAAGCAGCTGTTCATCTGTGCAGCTCTGCAATTCCTAAAAAGAACCAGAGATCCCTGCATTACAGAGACTGGGTAATCATGAGCACTAGGCAGGCAGGTAGGACACAGCTGGCCGCTGAAGAAACTTCACTATGTAGGCAGGGGGCCAGAATGTACCAAGAGCAAGCACAGTCTTTTCTTATCAGGAATGACAGGCTTGCACTGAACTGCACTATCAGGAAGAAGACTGTCACCAGAATAACCCGGCCTTTAACAAGTGGGAAGGAAAATGTATCCAAGATGGTTTGCCCTAGTTTGTGGATGTGAATTAGAATTA--TATTctgtaataaaattcaaacataTGTAAAGGTAATAAAGCAGCTCCAATATATGGATATTTGGGTTTGTAGAAGACAGAATACTGTGATTATTTTTGCtagatttaacaaaaaaaaa

a score=45422
s chr3           105810322 2798 + 160039680 acaTGTACCTGTGTACATACAGGAATAGACACATGC---ATGTGCACACACACAAG--TCAAGCCTGAAGCTTA--CTACTTTATAAGGCTAAGTGA-AATTTCCCTCTCTGTTCATGTCTGATTCTGGATGAGAACCAAAGAACTTCTAAACAATGATACAACCTAAGGGGAATGCAGGGAAGGACTTCATATTGTTCATCAT---------CAGGActctctctctctctct-----------------ctctctctctctctctctctctgtgtgtgtgtgt--------------------------------------------------------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAACACATGTG---ATTTGGGAAGG-----TAGTTGAATACAGTTAAGAA----AGAAAATGAGTTAAAAATTGTCCATTTCTTTTTGATCACTTGTTAAACCAGACATCAAACTT-GCAAA----------TAGGATCTGGAAAGTGGAAAACACACTAACAGTAAACTCATAATGTTAATTTTGAG---AGGAAAAGAATTCCAAATTCAATCCAGATTCAGAAATTATGACCTCAGGGCgtttgtttgtttgtttgtttTGAGTTCCTACTGATTACACTTGTTTAAATAAACTTGTAAGATATACTAGAAAAagctgggcggtggtggcgcacacctttaatcccagcactcgggaggcagaggcaggcggatttctgaggccagcctggtctacaaagtgagttccaggacagccagggctacatagagaaaccctgtctcgaaaaaaaaaaaAAACAAAAAACAAAAAAAAATACTAGAAAAAGAAATAGAGAAATACAGAATTTATGAGAATATTTAAACTCAAAGAAGGAAGATCTCTCTGTTTGTATTTGCTGCTAACCGATGAGGTTCACACAACAGAGTACATTGTTTTCTAAGAAGAGG--------GAGCATGTGGCACCCCTTGCCAAGGCAGTTG-------GTTGGTCATGTTGAGCTGAGAAGTCATAAGGATTGCTTGGGATTTCTGGGCAGTGCGAGGATGATGGTGAACTAGGGGAACAGAGAAGGTGACTGTGGAATGAACAGGA----AGACAATTTTGAAAGTTGATGACTCAGCATCTGCTTCTTGTGTATCAGCTGTGC-----ATGCATTAATATGTCATGGGAATGCTGTGCTACATAGAGCATAATACCAATACCTTAGAGGGAAAGGGACCTGTGAATCAGGAGAAAAATAGAAGAGAAAGA----AAAAAGGCTCAATGACTAAAAGTTTAAGAAATATTGAGTAACTAACTTTAAAAAAGAAATtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCACGTGAGCTAGAgtgtgcagaggttaacctcaggtgccaggcttcaatgtctgaattgtttaaggcagagtctctttgttgtttgtatttgcctatgccaggataactgggcatgggctcctggagattctactgtgtgtccacctctcagcaccaccattaaagatgtgcactgacacccatttttgaatgaacgctcagctttacatagtgtctggggaatcaggcaggttcttgcatttgtgccccagacattttacccacggtgccatctccctagccTGTGACTAGTATTTGAGTTAAAATAAAAAAGGATAAAGGATGCATTCTCAAATAGAGACTAGAATTTGAATTTACTATCAAATAGAAAGATGTTTtgatggtggtgatggtggtggtggtggtATGATAATGGTAATAATAATGTTTCAGGTAAACATAGGATACAACTAAAGGTCTGGTTGTGGCTTTGAATACAGTCAGAAGCAGAGGTGAGGCATATCCCCAAATCATTCCCTTGCCTCCTGCATCCTGGGGGTGTGGCATGAAGGGGAAAAAGCAAGGGTGTGCATGTCTCTC-ACAGACATCTGAAAAAAATCATG-TCCTCCCTCGGGTTTCAGGGTTTCTCAG-GTCCCTCCTTTCACCCCCAGAACTGTAATTGCCAAAACAGACAGATTAGCACAACTTCAGCCTGTGTAAGTATCTCATTAATGCTCATTTGCTGACTTTAATGATTTCCAGAACCCCTTCCTCATCTTACTGTCAGCTCGGGTTCATCAC----AGAAAGTTTGTAAACCAGGATGGTGTGAGAGGTCAGCTCCCCA-----------GTGAGGCATTGATAGGGAAATGAATTCAAAGGGATTCTCCCCATTCTTGTAGCTCGTTGGCTCTCTAATGCCCTTAAGCGCAAAAGAGCTAGGCATTGGATGTCCTGATGAGCTGGCTCAGGCAAACATCACTATAGTAAATGATACCAG-GAGTAGCCT----TCCTTTCCCAGAGTTTCACAGCTTCCTCCAATCTGCCTGAGAAGGAAACTCACAGCTCTGAGCTGTTACAATAAAACTATTGGCAGCCAGAAAAAGTGAAAACGGGGCCTGGTCTTAATTCATCACACCACACAGAGCTTTGACACATCAGGGTAATAATAACAACACAATGTTGTCACCGGATAATCCCTCCCATGCCCCCCCCCCCGCCCGCCCTGGAAGAGTGTCATGGACAGAGCATGG-TGGCCCTGCAGACTCTATGC---------ATGCTGGGAGACACATTCTTTGCATGGGATCTGGAGT--TGGGGTGGTGCAA----CTGGGCTGTGCAGTGCCAAGATGCAATGCAAAGCAGTTGAGAAGATGTAATTCTCTGATA----------GAAGCCATTTGCCAGTTCTGTGAGC--AGTGTTTCCATCACTGCTTATTGCCAGGGGAA------------AATAAGCATTTTA-AAAGGTTCCTCAGCTTGGAATATGATAAGAATTCAGCCTTGTCATAGAGGCAGAG-GGAGATTTATTCTTGGTTAGTTGTCATGTTGCGTTTGGGTTTTGAGACAGTTTTCACTACA
s HiC_scaffold_1 116424200 2388 - 233722169 ATATGAATCTGTTTATTCATTAGAAAGATCACATGCCAGAAGAGCCTTAAAGAAAGATTCAAGCCTGAGTTTTAAACTACTTTATATGGCCATGCTACAACCTCTTCCTTTGTCCATATCTGCTCATGAATGAGAACCAG-TAACTTCCAAACAATGATACAACCTAAGGGGAATGCAAAGAGGAACTTTATCCATTTCCCCATTCTCTCTCTCAGCgccccctctctgtctctgttgtctctgtctctgtctctctctctctctctctctctgtctctgtctgtctctctctgtctctctcacacacacacacacacacacgcacacacacacacgcacacacacattgtgtgcatgtatatgtgcatGAATGTGTGGGTATGTGCTTGTGCATGCTAGGGCAGAGGTACTAGTTCAAtagag---aaaattccagaaaagaaGTTGGTACTATTCCTTTCCTTC--GATAGCATGTTAAACTAGATACCAAACTTTGTAAAACATATTAGTTTGAgcccagaaagaagaaaacatatttcCAGTAAATTTACAATATTAATTTCGAGCTAAAGGAGCAAACCCCAAATTCAAATCACATTCAGGAATTATGACTTCAA----------------TTTTTCCAGGGTTTCTACTGATTAAATTTGTT---ATAGATTAACAAGGTAGAAT---------------GTAGTAGGg----------------------------------------------------------------------------------------------------------------gaaaactaagaaaaac-----------------------------------------tagaattCACAAGCAGACTTAAATACAGAGAATGAAGTTTCCTATGTTTGCATTTGCTGTTAACAAATGAGACTGAAGCATAGGAGTACAATTTTTTCTGAGGAGGAGCACAAGGTGAGTGTGAGGG---CTTTGCCGAGGGGATTACCAAGGATTTGGTCATATTT-GCTGGAAGGCCACAGTGACTATATAGGTTTTCAGGGCTGTACAGGGATGATGGCAAACTAGAAAGGCAAAGC-TGTGGTTGTAGTGTGAGGTAGATTGGAGATTATTTTGAAAGccaatttataaaaaattttatattgcATATCAACCATGTGCTGGATAGGTTAATAGTTCA-GGGGATACAGTGGTACACAGAAGA-AATGCC--TAGTTTAGAGGAAA--GTAGTTAACAGTCTAGGTGAAGATGGAAGAGAAAGATCGAAGCAAGGCTCTGTAACCAGAGGGTTAGAAAATCTTAAATTGC-------ATAAAAGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGCTaatatg-----------------caccaataaaaattttaaaacacactcTTCTCTAAAT----------------------------------------------------------------------------------------------------------------------------TTAGGGCTGTATTATAA----GAGAATAGAAATAGAATCTGCAATGAAAGAGGA-GTTgtcttaacaaaaataa--------------atatga-----------atgaagTTTCAGGTGA-------------TTGAAAACCTTGCTTGAGGTTTGAACATGGTCTAACACG--------------TTTCAAGTACTTCCTTTGCCTCCTGCACCCTGAGTGTCTGGTGTGAAGGACAAAAC---AGGGCATGCGCATCTCTTGACAGACATCTGAAACAGTTCACAATCCTTCTTGGAGACTGACCATTTCTTGCCATCCCTCTTTACACCCT-AAAGCTGTAATTGCCAAAATAGACAGATTCTCACAATTCCAGCCTAGGCAAGACTATCACTAATGCTCATTTGCTGACTTTAATGAGTTCCAGAACCAATTTGTGATCTTAAAATCAGCTCAGGTTTATCACTGAAAAAAAGTCTGTAAGTC----TAATGTGTGAGGTCAGCTCAGCAGAACAGAGCTGGTGAAGTATTGATATGAAAATGAATTCCTGTGGGCATTGTAAGGCCTTACA--------GTTCCCTAATATCATGAAGCATAAAAATGCTACATGTTGGATGTCCGGATGAGCTGATTCATGCACA-ATACCTATTGTGCAGACTACTTTCAAGTATCCTTTTGTTCTGTCTTCAAATTTCACAGCTTCCTTTACTCTgcctaaaaaggaaaa-cacatcttTGAGCTGTTACAATAAAACCATTGGCAGCCTG-TAAAGTGAGAACAAAACCTTGCCTTAATTTATAACACCACACAGATTTATTACACATCAGGATAATAATATC-ACTGGGCTTTGCTGCTTGATAATCTCTGCTTTGCTTCA---------------GTAGGAGTGTGTTAAAGGTAGCTTGGAGGGCCCTGAAGACTCACTGTTGATGCCAAGTGCTGCCAGGCACACTCCT-------GTTTCAGTGCCACAAGATGTTGCCAACTGCTGGACTGCACAATGCCAAGATATGATGGAGAGCAGGTG---AGGTATAGTATTCTGACAGAAAACTCGGGAAGCCATTTGGCAAGTCTGTGAGAAGAGTGTTTCCACAGTTGTTTATTACCAGAGGAACGAGTATTCCTTGGTTAACTTCTTACAAAGGTTGCCCAACTTGAAATATGATGAGAA------CCAGTCTTAGAACTATAGAGGTGAGTGATTCCT--TTAACGGGCATTTTACCT----GCCTTTAGACAG----Caccaca

a score=33458
s chr3           105814288 2179 + 160039680 CTTCCTGTCTGAGACATACATGAGGTTTG----CTTTGCACTT----CCATGGAGCAGTCTGTGAGGTAAATTGGC--TTGGGGGATTTTTAACTCATCCAAACGATTGGCAAAACACGAAACTAGGAAAAGCCACGATCCTCAGGAGGCTG----TGTC------CTCTCAGAATGGGTCAGGCTTGGACC-----TCACTTCCTTGGCTTCTAGCAATTAGGACCATTTGGACAAACCCTAAACCCTGCTACCTTCTTCAGCTATGTGGTA--------------GGCCTGCTACCATGCCTGTCTTCCATGTGAGTC----AGAGGGGAGTTATGGGGCTAACAGGAACTTTGGATGGCAAGTCTGCCCTGCACACCTGACCAGAGAGCAGTCAAGCAGTAGAGAAGCCAGAGGAGTAGAGTGG------AGCCACGGAAATGGCGACAAACACCATCCTGAGTGCCCCCAAAGAGTTAACTGGTCCAGATGCCTTTGTAATACCTTGAATATCATTTTAAATGAAAAGCCTAAGACTATTTCTTGCCCCTGtttggttttttaagacagggtcttctgaagcccagatttggtcttcaatgtggaataaactcctagtctttgtgcttccgattctcaaactctggatgggtgcaccatcacacccaggctGAAACTGCCTTAATTCATGATGATGAGGATAAATTCATAAGATGGAGGAGTTGCCTCTAAATACTCGGTGACATAGCTGTCAATAGT----------TGGAAAAATAAG----GAGAATGGCTACCAAGGAAGGCCACAGTTGATTTGAAGTGGGTAAAGTATTGTCAAAGATTCCAAGCCCCACATGTCAAGAGATGTGAACTCATTTATGTTGAATGGTCTAGATGATGATAATGCTTTGGGCTTGTTTCTTAGAGTGTAGTCTGGACTCTGGACATTCTACAA----AATTTAATTTCGAGTATAAGCAGAGCATAATGACGACCACCCCATAAGAATTTGGATAGAAGGACGGCAGCAAGTGTGGGTCGGGGGAGCCTTGATCAGTGACAAGGTGTGAACAAGGCAGAGGCTTTGGGCTGACAAGGAACAGTCGCCAGACTTCAAAGCTTGTGATGAGGCTGACAGCATTGAGGAGCT--------GTGTAGAGACTTGGC-TGTCAGCCCTCCTGATAGTCACAGATAGGGCAGCTTTCATGCAGAGTTCTGTACA-CACCCTGGGCTGCCTTCA-----------GGGCTGCATGGATGTGGGTAGAGTCAT--CTCAGCAGCCGCAGGCTCCTCCTGCTATACCCACTTCCTCGTTTGCAAACTGCTTCACTTCTGAGAGACCAGGGCCCTTTCCAGTAGCTTTA----------------------GGGATGGTAAGTTGTAAGTGATTCTTGCTAAGTATTCCTTTTATGCTCTT-AAGTCTCATCAGAGAGATAAGAAATCAGGGCCCAGATAAACAGGTGCCTGTGTTACATTCACTGT----AAGTGAGTCTGCAGTGAAGCTCACGTGAACATG---CTGGAGGCAAAGGCAAGTTCCAGGGTTCAAGTTCAGTAGG---------------------ATTCTAACAGCAAACAATCACGCCGC-------TCTGCTTCTTTTGTTTAAAACA-------------------------AACAACTAGAAAATGC-CTCCTTATTAGGTAGGTAC------------------TGTACGCTATGATTGTTAAATCGCCATCCTGAACATTTCAACT------------GTTTGTGTCCCCATGCAG-CTGTCCATGACCCAAACTTGGAGGAGGACAAGTGAATGCATCTCATAAAGGAGAAGGTAATATAATCAATCGCTTTATCTAACATTTCTACCTGGGCAAAGATGGAAGTTTAATTTTCAAGGTACACGGATACTCTCTGTTGACACTCTACCACACGGCAGAATGCTCTGCTGATCTCCTCTGCCCTGAGTTAATTTGGGACCTTTCCTCTCAGAG-----AAACAGTAAACAAT-ATTAATTTTCACAGCATTGTGAAGTTGGTGACGTCGCTCA-----AGCATGATGAC-AGCTGGTCAGTAGGTCACAAGTTCTCCTCGTTGTTAT------TCCCACAGACTGGGAAGCCAAGGCGGAGAAGGAC---------ATGTGAGACT---------------------------------GGGCAGGC------TTCAGCTGTCATCTGTGGGAAGTGGC-TTTTGGTTGACCAGCGGTACTTCCCAGTGTCAGCACGTGTGTTGTGTCGGCAGCTCAGACCTTGCGCTGAGGGGCCCCTGTCCTCAGCCACC-CTTCATCTTGGGAAAACTCTCTGGTG--TAGAgcagggaggtagggaggcagggaggcagggag
s HiC_scaffold_1 116427641 2175 - 233722169 CTTTCTTTCCAAAAAATATG---AGTTTgatatttttgcatctgtgtctgTGG-GCCATCTGTGGGATAAATTGATATTTGGGGACTTTTTAGCCTGCCAAAATGA----CAAGagacaaaattgtgaaaa-ccACCATTCTTGGTAGACTAACCATGCCTGACACCTCGCGGGATAGATTGGGTTTGGGTCACCTCTTCCTCTCTTGGTTGTTAGTTGTTAGGAACACTGAGTTAAGTCCTGACTGTTGGAAAGAACTTCAGTCCCGTGGTCACTAAATGCTACCTGGCAAGACACCAGGCCAGTCTTCTGAGTGAGTTCCTAAAAGAATAATCACTATGC--GCTTGAACTCTAG-CAGTGAGTCTGCGTCACAGAACCTGTCCCAAAATAACCAAGAGATAG--------GAGAGGTTGATTGGTGGCCAAATTACGGAAATGCAAATAACCATGGTGCCACGTGTCCTCAGAAAATCAACAGGGCCAGATAC-TTGAAAACACATAGTCCATCACTTTAGATGGAGGGCCTG-----------------------------------------------------------------------------------------TGTGCTTT---------------------------------AACTAAGT---AATTGGCTT-------------GAGGATAAATTTTTGAGAGAGAGAACT--CCTGTATTTATTTGGTG-----GTTTTCAATAGGGTGGTacagatggaaaaaaaagagctgaaaatA-----CAAGGTGGGA---AGTGGATAGAAATTG--TATAGCACTGTCAAGAAATCCAAACCAGA-ATTTCCAGGGGTAGGaactcattt-tatttaattattttgatgaTAATAATG----------ACTTTTAAGGATATAAGCTGCACTGCGG-CATTCTGCCATTGGAAATTAATTTCCAGTACAAGCAGAGTGTAAT-AGGGCCTCACAAGGAGAATCTGTATAAAAG------------TGTGGCTTTCAGGAA----GAGCTCTGAGAAGGTGGAGACGGGGCAGAG-CTTTAGTCTTACAAGAAATGGTTGCCAGACTTCAAAGCACGCTGTGTGCCTGACAGTGCTGAGGAGTGCTCACAGAGTGCAGGAACCTGACTTATCAG---TCCTGATGTTGACAGATAGGGCAGCTTTCA-GTGGAGTGCTCCACAGGGGCCTGTGCTGCCTTCATCAGTCTGAAGGTGCTGACTG--TGTGGGTGAAGGCCTCACTCCTCAGCC-------CCTCCTGGCGTACCCGCTTCCTCCTGTTCACACTGCTGCTCATA-GAGCAGTGAGGGCCCACATCAGCCCCCTTGGCATCTCTTATATCAGAGGTCTGGAATGGCAGATTTCAAGTGATTGTtgcaaacttttccttttttgctcttgaaGTTTGGGTCAGGAGCAAAGAGTAAGTGGCTCAA--GAGCAGGTGA-------GCACCTACAGTTCTAGAGTAAGTCTGAGATGAAGCTGACTTGAAATTGGAAGGGGAAACAAAGACAACTTTCAAGATTTGAGTTGAGCAGGCGCTCATAGAATTGCaatcctgatttaaaaaaaaagaattgcaatcctgtaaattttacttgttttgttaaaaagaataggAGGTAAAAGTAAAGCAAAGTAAAAGCTACATAGTACTCCCCTTAATTGGTAGTTACAAAGAAGAATCTAAAAGATgttcaccat--tttaaaaattataattctgAGCATTTCAAGTGGGATAACTGGGGTTTATACTCTAACATTGTCTGTTTTTACTCTAAACCTGGAAGGGAACAGGAGATAATATTTTGtgaaggaagaagtaaaataattGGTAGCCAT--------TTTCTATCTGGACAAA-ATTAAAGCTCAGCCTATAAGCTA-AGGGATGCTTTC-----------------------GCGTACCTTACTGATTGCTTCAGCGCTACATAATTTGAGCATCTTTCATCTCAGAGTATGTACATAGTAAATACTAATTAATGTTCATAGCATTCTGAAGTTGGTCCAGTCATTCACAGTTATAGTGGTGACAAGTTGGGATGTAGGTAGCAATTTCTCTTTGTTGTCATTACCCATCCCACATGCAAGGAAACTAAGGCATCAAAGGATAGAGGCAAGATGTTGGCCTCAGTGTTCTGGACCAAATCAGTAGTGTTCCAGGAAGCAAACATTTAGTACAGCTGTCATCTCTGAGAAGTGGCTTTTTGATTCAATAGCGGTACTTTCCAGTGTCAGCACTTGTA-TGTGTCAGCAGCTAAGACT-------------ACCACATCCTCAGCCTCTACTTCATCTCAAGAAAGCTCTCTGGTGGTTGAAGAATAGGGGAAGAAGGGTGAGGTCTCAGTGAG

a score=94012
s chr3           105820117 6794 + 160039680 [encoded data, 7271 characters]
s HiC_scaffold_1 116432706 5691 - 233722169 [encoded data, 7271 characters]

a score=45577
s chr3           105834693 1879 + 160039680 tcttctatgggtagcatctctgaagtcag-------actgcttacaccaatgtcagtcagactgtagtcatgacgtcattgccatggtctgcccaggcttaaattttatcatagctattcacgctgtcatgacttcagttgagttaagtacactgttggtaataatatgttgggctaagttgctgtttaaattacgaaaaatcgcactatgagttggca-ttaagaggcaaagtcactgtatttgcaggaggcaaagaaataaagccatgtgggttttat-----------------------------------------------gctcagaaagcatagtcaccattgaggaaatgatta---------aaattgttattgttactttttttgaaaa---------aaaaaaa-------------aaaaaacaaaaacaa----------aaaaacaaaaaccaagagctaaatgtcttaagggaactgagaaagaaagacacag----gtaaaatggtgttgtgttttgttagtgagatgcacata---------cacagtaatctaagctgcacaaagcccttcagagggaagtgcgtgggaagaatcggcccctacttcaaagcacagaggcggtgggtgtggcggactcctgggtcttcgggttacaggtaaagcattg-gtcagagtttagttggtggggattcttctttgttagtggtgcatagaaatcataatgtggtttacagttaaaaatatcttTAGGACAAATGTGGCACAAAATCCATGTTCCTACAACTATCTAA-ACATTTTCTTTTGGGAGAAACACAGATGATCAGAACTCTGAAAACCAGGTTCTCCCATTAGACAATGAGGAAACTGAGTGCCACCAAGAGGTGGTGCCTGACACATGATGACACCCACAGCCTTTTTAAAGGCAGACGAGGTTTATTTACTACTGAGAAAACTGTCTTGCCT-ATGGCAAAAA---------TAGATAAAAATTATATAATGTCTCAGTGGCCTATACCTCCACTTAAAACCTTGTGATTGCTTTGCCCCC-ATCACGAGGGCGATAAACTGCTTCCATGAGCATCTGTGACTACTAAGCCCTAATAACACGCCTCTGATTTAAGCCCGTCATCTATATCTAGTTAATCTCCATAATCACCAGCCCTGCTAGCTTTATAGTTT-AAATATTTCATACAGCATACTCTCTCGGTGTCCCTTTTTATTTTCCCCATGACATTTTAAAATCACATGA---TGTAGTTTAAAATATCTATAGATAGCAATTTCTTTATTTGATGTGATTATACCCCCCCAATATCTAAAAAA-----TTTCCCCACT-GTCAGTCCTCCCATAGAGCTCAGATGGGTAAAGAAAGCAGGTGTCCAAACTTGAAAGGGGGGGATTAAACCAAGAGCAGAAATGACATCCATCTCCCACAACTGACGAGGC-AGCACAGAACAACCAGGGACAGCTTATCTCTTCCCACCCATTCCTTCTGGTCCATGCTAGCGCAGAAGCAATCTCTATTCACCACCCACTGCTTCCAATATTAGGAAGAAAATATAGT-GCTGATGTGGA---AAAGCTACTAGTTGCCTAGTTTTCTAGTTTTTTTTTTTTTTTTTTCTCCCCGCAGTGGGAAGTTGC--AGAGTCTTgcaaggagaagtgtcagagtccctaaaactagagttacagatggttgtaggtgctg----tctggatgttgagaactgagtgtgagtcc------tctgacccagcaagcactccta----acccatgagccttc-----------tttcaagcccTGTATAAGGAGATTTTTGTGGTCAACAATTATATAGCTCACCCTTTCAGGTTCAGAATTTGAACTGAAAGAGACTGAAATTTGGTATTAACCACCTCAGTTATG--AGATACTACTTTTCCTAGTTTTATCATAGGATGGCATTCTGGTGACCCTCCCCACCCCGGCAATAGTCATAAATGCTTCCCTATTCATATATGaa
s HiC_scaffold_1 116449690 1900 - 233722169 TCCTATATTTTTAATAACCCTGAAGTCAATTGTGACACTGCTTACACTGATGCCAGTTAGGCTACAGTCATGATGAAATTGTCATGATCTGCC-AGGCTCAAGCTTAGTCATAGCTGATTTTGCTGTCATGACTTCAGTT-----CAGAACACTGTTGATAATAACATGTTGAATTTAGTTggtgtttaattta-aaaaaattgctgTACAA--TGGCAATTGAAATGCAAAGTTtctttatttgcagaagacatggaAATAGTGGGACACAAATTCAATATTAGTGAAGCAGCtgggcacacccctgtaatcccactactctggaagctgaggcagaagggtcatcat-gagttcaagactagcctggactacattgtaAGACCCCATCATGTTAAAAAGATTCAGTGAAACAAATATTCATTATTGGAAAAAATGATAACAATTTTATatatcattgtaaaaaaaaagaaccaagtaTTTTATGGGACCTGAAAAAGCTACCcacagttaaataaaataaaattttgttttattactgagatatacaaaattttttcttaaaataatctgAGT------AATCCATTAAAAGGCA--------GAAAGAAT-AACCTCAGTTTCAAAGCATGAAAG--GTTAATGTGAGTGACTCCTGAGTCTGAGGATTATGG------TATTATGTTGTAGTTTAGCTGGCAAGATTTTTGCTTTGTTAGTAGTACACAGAAA-AATGGAGTGTCTTACAAATAAATGTGTCT---GATAAGAGATGATATATAATTTATGTCC--AGAACTATCTAAGACATTTTCTTTTAG-AGAAACACAGACTACTGGAG-TATAAACATCAGCTTTTCCTTCTAGTAAGTAAAAAACCTGAGTCCTAAGAGAAGG--GCAGCTGATTCAAGATTGCCTCCCATGGCTTGTTAAAGGcagaagaaatttatttaaagtgGAGGAAATTGCCTCACTTTGtggcaaaaaaatcaaaagcagatAAAAGTTACAGAGTGACTTGATGGCCCAGACTTCCATTAAAAATGCCgtgattactttttttcttatcagAAGGACAATAAACAGCTTT----AGCGTCTG---CTACTAATCTTTGACAACATGCTTCTGATTTGTGTCCTTCATCTGTGTGTATTTAATTTCCTTAAACTGTGGCCTTGAtggctttctatttttaaatatttcacaggGCAAACTCTCTTGGTGTCCC-------------CATGGCATTGTAAAATCACATGagcactaattttaaaatat----agacagCAATTTATT-ATTTGATGTGATGTT----TTTCAGTATCCAAAAAAACAAGTCACCTCACTTACCAGTTGTCCCCTCGAGTTTGGGCAGTTAAGGAAACCAAGT--TCAAACTTGAAAGGGGAGAATTAAACCTAGCACGGAAGTGATATCCGTCCTGCTCAGCTGATGAAACCATAATGGAACAACCAG--ACAGT--------------CCATTTCTTCTGGTCCATGCCAGAATAGAAGCAGTCTCTGTTTACCACCCACAGCTTCCAATATTAGCAAGAAAATATAGTGGAGGATGTGAAAATAAGGATGTCAAATGCCTAATTTTCTAGTTGTT--------------------CAGTAGAAAATTGCATAAATTCTTG---GGgcatgtttctgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgttttgtctctgtgtgtgtgtgtctgtgtgtggtgctggggggTCAAATCTAGTAGTACCTGGTATGGTAGACAAGTGCTTTCACTGATTTACTTCCCAAGCCATG--TAGTGAGATTTTTATTGTCAGCGGTAA----------------AAgttcagtattttaaatatttaagact-CAGTTTGGGGTTCCTTTCCTTGATTATAATAGTTGTTACTTTTTATAATCTTACTAAAGAATGTCCTTCTGGTCACCAGC-------------TTGTTATAAGTTATTCCCTGTTTATAAGTGAA

a score=7229
s chr3           105838124 208 + 160039680 ACCCATTACTATCAAGGGTGGCCTCCTTGTCCCAGAGAGTCATTGGGCATAGCTCCAGCAGCCAGGGAAGTACCCTGCCATTTTGTACTTTTCCAG--AGCATGGAGCCTTTGAGGGTGGGAGAAAGTAGAGCTTTTGAGAGGCTTGAGGACTGATCTGTGCCTGGTAACCTCTGCTCAGCCACCACGAAATGCCGGGATCCCTTTAAAA
s HiC_scaffold_1 116452692 209 - 233722169 ACTTGTCAGCATGAGGGGTAGACTCTGTGTTTCAGAGAAAAACTGAGCACATGTCCAGCTGCTTGGGACATATCCTTCTCTTTTGTAGTTTTCCAGTAAAGGAGGAGACTTTAGGGGTGAGGGAGAGCAGAAGAGTTGAGAGGC-TGAACATTGGTCCATACCTGGAAACCTATGCTTTGCATCTAGAAACTACAGGAGTTCCTGCAAAA

a score=26214
s chr3           105838764 584 + 160039680 GCCTTTCCAATTCAATGACATGCTCCAGAGAGGTAGGCTGACCCCTGGACCTTCATGTGC-CTGC-TCCCCTTGGAGTTATCTCAGGATGCTGTGGGTGTATCACAGG-----------ACAGCTGCGAGACCAGGTCTTGACCTCTGTGGGAGTGATCCTCCAGCTTGGCACCTAGAAACTTCAAA---AGATAAACTGATCCCAAAGCTCGTAGGCCACAACTTCTAACACAGCTGTTAGAATGTGCACCCCGTAAACAGGAAATGTCTTAGGAGATACAACCAAATATTTGTTATTTTTATTTTTAAAGAACTATTAAAATGTCTGAGCAGAGGATGACATTTATCTGGCGTTACCATTAACAAGCTGGAGCTTTTCCCCCTAGTGGCCCTGGCTTTATGTTTTAGGCCATTGTATTCCCACTGCTGCTCAGTGGAAGCTTAAATATCTCCAAATTAATCTATAACTCATTTTATCTTGCAATATCAGTGTCTCAGACAAGGGAGCTGTAAGTCACAGGGCTCAGTTTTTTGGTTGTTGTTGTCGCTGAACAAGAAAAGATTTACTAAAGCTCAAAGCATTATTTAGACACCTtgtt
s HiC_scaffold_1 116452921 583 - 233722169 gcctttctaatt-aatgacgTGTGCCATGAAGGTGAAGTGTCCTCCCAGCCTCTATGCACTCTGTGTCTTCTTGCAGCTGTTGTCAGACTATGAGGTTGTA--AGAGGTGAGGACTCTTACAGCCCGGGGACCAGGCACTGGCCTGGGTAGGAGTAATCCCACAGTTTGGCACCCAGTAGCTTCAAAGTCAAACAGTTTGACCTGAAAGCTCTTAGGGCATGCTTTCTAACACAGCTGTTAGAACACACACCCTGTAAACAGGAAGTATCTGAGGAAATACAAGTgagtactt---atttttatttttaaagaactatttaAAACCCTGAGCAGAGGATGACATTTATTTAGTATTACCATTAACAAGATGGAGCTT--CTGCCTAATGGTTGTGGTTTTATGTTCTGGATAACTGTGTTCCCACTGCTGCTTAATGGGAACTTAAATATTCCTAAATTAATCCGTAACTCACTTTGCCTTGTAAAATGAGTGTCTCAGTCAAGGGAGTTGCAAGTTAca-----cagttt----gtttttgttgtcatgaaaaaggaaaaaatttactAAACTCTAAGTTAATATTTGCACACCTCCTT

a score=9228
s chr3           105839775 475 + 160039680 ACATCTGTGCTTGAAACACTAGGAAATAGGAATATCATGTAATACAGAAC--AGAGGAGGCTCCCACCAGTAGAAGAGTATCAGCCAAGGTTAGAGATGTA-----------------------------ACCGTATGTGGTCATAGCACTTCTC---ACCTGAGGGCCATCCTGTCACTGTCTTTGCTATGCATGTACCATTTGTCT--GTCACGCAGCCTCCTCAGATGG------TCATCTCTAGGTC-TTTGCTAGAGTTCTGCATACATCTGGTATGGCCCAGTTCCTCCTTTTCCTGCTCTCGGTTTGGCCACTTCCTGGTCATTCTTT---ACTGTCCTGTCACTTGGGTAATGTCT--------GAAAGCCTTGTACAGAGGAAAGAACTTGTATGTTGGAAAGAGACATAGCCATGTTCAAACTTTATTCCATTTCACACTAGATGCATCACCAAGGGATATCCTAGGCCCCGAGTCAGCTTGCTCCTCTGCTAAAGGAGCTAATGCCTTGGGAACTAGA
s HiC_scaffold_1 116453496 518 - 233722169 ACCTCCTTTCTTGGGATACtgggaaaaaggaaaaccaaatcaAGCGAAATGTAGAGGAGGCTCTAGCTTGCTGAACAACATAAGCAAAAGGTAAAGTGCTAGAAGAACTGCTGACTTCTAGAAAAGACTTAGCTTTTCTAGGCACAGTGTTTCTCTGTCCCTGTGATGTGACCTGT---TGCCTTTCTCAT-TAGGTACCATTTGTTTCAGTCTTACAGCTGCCCTAAATAGACTGTTTCACACCCAGGACGTTTGCAAGTGCTCCACG-ATATCTGGAATgcctcagttctt---tttctttccctttctttggtAAATTCCTCCTTGTCTTTTCAGGCTGGAGTATCACTTGATTTAATTATTGCAGCAAGACAGCATCATACAGTGGAAAGAATTTGGACCTCAGGGTAAGGTATAACTGGGTTCAAATTTTGGTTCATTTCTCACTAGATCCATGACCTGGTGATAATTTGACCTAAGACT---TTTCTTCTTCAGCTAATGGAGTTAATGCCTTACTCACTAGA

a score=20662
s chr3           105846354 925 + 160039680 TCTTCCCAAAGCCTGACTGCAGATCCACA-GGAGGCCAATAGCTCCTTAAAGATTTTG---------GGTTCTGATTGGGATCTGGTGGCCTCCCAGCTGGCACCAGCAGCCAGTATACTTTCCAGAGATAAGGAAACCAAAT-----ATTAGCTAGCAGGAGTGTAAACAGTACCATAAACACGCCCATACCTTTTTTCTCCTCC-CCTCCCCCGCCCCTGGAGCTGCAGCAACCTGTTACACCTGTCCTTA----GAGAGGAGAATAAGGGACTGAATATG---TGGCTAAGA------GACTTGTTTAGCCCAGATGGGTTCTCCTGCAGAGAAAGGTTTCTTTATTCCCCACACAGAATGGGGACAAGTTCCTTGATTTCTTCATGACTCCCTCAAGTAACCTCACCTGTCTCTCAGCACCTTAAGT---TGGCCTGGAATTATAAATATACTACTATGGTCCTGCAATCTCTCATCGTTGTTTATATGGCTGTAGGATCCGGTTTAGCGAGTGTTTTCCAA--CTCCTTTGATGTTGGTCT-------TGTGTATCAAACAATA---GCTTCCCTTAGGACTTCACATCCTGTATCTTCAGTGTTGCCTGgtatggtcctctgcctagtataccagggttagccaggagctctttagataatgtaacctctctgatttcaccccagaattatggagtcagttcaccttttacccaggtgactcatctgccgtttaaactttaag-----atgcCCAGGGCTGGAATGATGTTTACAAATATACAAATTCTGTGATGCTAAGTGAGCTAAATAGTACTTAGGACAGGCTTGTCATCTTCTGCCCATCAAGGACTTTGGGTGCAGC--CAATACTACCTCGACCCTCTTTGTATGCCCTTGTATATATTACACATGTATATATTATCTATAATGTCATGTTCCAATATTTTCATTTTAATAGTAGTAATAAGT
s HiC_scaffold_1 116459028 886 - 233722169 TCTTCCCAAATTCCAGCTGCAGGCCAACCTGGAGGCC--TACCTCCTGATAGCTTCAGCAATGACTTGAGTCTGAGAAAGAT-TGGTGGTCATTAAGCTGGCACCAGTAGCCATTACATTCTTCAAAGATaaggaaaccaaaccaaacataaACTAGCAGGAGGATAAACAGTATTATAAACACACGCACATCTTCCTCCactccctccttccccctctcAGAAGGAGCAGTAACCTGTCCCTCCTGTCTTTATTTGAATAGGGAAATAAAGACCTCAGTACAACCTGGCTTGGATAATGTAAATTGTCTAGCACAAAGAGATTCTCCTAGAGata---tcttcttcatttttcatGCTGAACAga-atgtcttcctttctttcttcaagAATTCTTCAAGTAGTATCAGCT--CTCTGAGCACCTTGACTCTATGGCTCCAAATAATACATAGATTTAGATGGTACTGCAATCTCTAATCATTATACACATGGCTACAGGATACAGTTTAGTGAATATTTTCCTAGGTGCTGTTGTATTTGGTTTTGTACCATGTGTATCTAATTATACAGGTTCCCCTTGGAACCCAACAGCCTATGTCCTCAATGTTGCCTCTTGTGGCCCTCTGATGAGCA-GTGGGAGTCCACTGGGAATTTGTTAGA-AATACAGA--CTCAGGCCCCA-CCCAGACCCACTAATTCAAT----------------AAGATCATATGCATTTTAA----TAAGACCCCATACCTTGGGATACAATGTTGTTTAC-----TCCCAGTTTAATGTAGTT-----------------------------------TTCTCTGTCC-TTAATGTCCTCAGATACAGCAGTAATTCTAC--TGAATACTTTTGTATGCTttcatatatactata-----------tatttttgATGTCCTGCctagatattttta--ttaatattactaataagt

a score=14689
s chr3           105855971 437 + 160039680 GGAAGCATTT-CCCACGAGTTGTCTTGTTTGCCCACCTTCTGCCTTTAATCGTTGGATTTATTGATTGCCTA-TAACCCAGGGCTCTGGTAAACTTTTATTTTGTTGTAGAACTCAGGTTCTTTCTTCCTGAATGTCCCTCAAGGTTCAAAAAGTCAAATATTA-----ACCTATGGGAACCATTATAATTTATGATTAAAGGAGCCATATCTAAGTATCTCAATGAATTCTGTGTGCCAATTATTTCTT-TATGTATGTCTTTCCTTCCCAGATTGA-----GACTGCAAGCTGT------------CTGCTACATCATTTCATACTATGTTTA-----tagctctgctccttactagtgctataggacttgggttagattacttaatctct--cagtgttgatcctctcatctataacatcaacatgataatatcctttgcaaagtggtagtctaagaatttaaaga
s HiC_scaffold_1 116474028 457 - 233722169 GGAGGCATTTTCCCAGGGACTCTCTTATCTGCTCACTCTATGCCTTCAATCactgaatttattgattatataataACTTAGAGCTCTTACAAACTTTTATATTGTAG----ACTCAGGCCCTT----CCTAAATATCTCTCAAGGTACAGAAAATCAAATCTCAGTCTGACCCAAGGGAACCATCATAATTTGTTATTTAAGGAACCATATTTTGGAATTTCAGTAAGTATTGTTTTCTAGCAATTTATGATAAGGACGTTTTATCTCCCCAGATAGACTATCAACTGCTTGCTGTTAAGAGTATAGACTTCTGAGTCATTTAGTATTAAGTTTAAGGCTTGGCTTTGCTTCTCATCAGCAGGGTAGGACTTCAG-TAGTTCATTTAACCTCTTCTAGTGTTAATGTTCTGATCTATGATAGTGACATGATA--ATTCTTTCCAAGG-GTAACTGTGAAAATTAAGAGA

a score=13959
s chr3           105856879 347 + 160039680 TTGATCTAG-ACCTAGCACATAGTAAGACACTAACCAATGATCCCTTATTAACAAGAGCTACTAGCATAACGCTGGATA-ATGTCAGAATTGAGTTTTCCTCAAATTCTTGATTGGGAAATAGAAATAAAACTAAGAAAGCAGAGTGACTCCAAGCCACACCTGGCATTAGTCTC-TAGGCTGTCAATGCAAACAGAAAGGTTTATGGTTTCCCTAACCCAGGCAGAGACTTAAACAACAGTAAAAAAAAGGTACTTTATTTTCTTGGTTTGGCAAGTGATAAATATCATTTGAAGTAGGCAGTGGGTTTATGTAGAG--AGAGAATATTGGCAGTATTAGTCTGGAAATGT
s HiC_scaffold_1 116474502 346 - 233722169 TTAACCCAGTACTTAGTACATAGTAAGAGACTAACCAACAGAACTTTATTAACAGTAGACACCAGCATAAAGCTAAACATACATTAGAAACTAGTTTTCCCAATGTACTTGAGTGAGTACTGGGGATAAAGCAAAGAAAGCAGAATAGTTGTAGGCAAGTCTTGGCTCTAGTCTCATAGTCTATCAATAGAAACAGGAATG-TTATGATTT-CCTGACTGAGGTAGAGATTTGGACAGCAAT---GAAAAGGCAATTTATTTTCTTGGGTTAACAGCTGACAAATCTCATTTGAAAT-GTTAGTGGATTTAGATAGAGGAAGGGAGTGTTGGCAATATTAATCCTGCAATGT

a score=17153
s chr3           105857275 679 + 160039680 TTTCCAGGACATTTTTGAAAAGTTCCCTGGATGCATTTCAAAACTGCCTAAATCCAACCTAGTGGAGGGCGGTTGCTCAAG---GTGACAGCA--TTTATCTTACTTCTAGACTAGCCAGAGATGA-GTATGGTCTTTG-TAAGAGGTACACA-AGTTGGAGCTAATTGGGTCATGTGCCCCAAGGCAGGAAGAAAGAACTTGACAAGGGTTTGTGAGGATGCAGGGATGTTGGCT------AGTTTATCCTCGCAGGTTTCCAAGGCAACGGATGTCTCTTAGGTGAGTTGTACTGTACCAGGGTCTTCTTTCCTTCTGTTCAGGACAAACCATTTATTCATTT--CCAGTAAGTGTTTGTTAAGAACCCACTGCATATCTGCACCTGGCCCTAGGGTCCAAGGAATCTGAAACAGGAAATGAAATCAGCACCATCAAGTTCTGCCTTCCTTCT-TGCTAGCTCAGCTGGGAGGCCG---------AGGTGGGGCCTGGTAGGGGTGGGATCATGCTCTTTTATGACTCCCACGTGATTGAGTATGGTGAGAGAATGCTAGACA-CCTCTGTCAGCCTCACCCCTTAAATTGTAGTCTTCACTTTTCCAGTACAAGGGCTGTTAC--------TAAGAAATGCTCGGCAAATGGGTGTTATGTGAAAACCTAGGCTGTTCTGAGGGTTGATTTTGGACTCCCGTGTTTGATGT
s HiC_scaffold_1 116476105 665 - 233722169 TTTTCAAGTCATTGTTG-----TTCACTAGACAAATAACAGAACT---------CAGCTTAGTATGGGACATATACTCAAGAAAGTGACAGCTCTTTTACCTGATTTCTGGACTAGCTAGAGATCCTGTGAGGTTTTCAACAAGAGGATTGCAGAGGTGAGGCTGATTGGGCTGGGTGTCCTGAGACAGGAGGGTGGGAGTTGACAAGGATTTGGGAGAATGGAGGGAGGTTGGCTGTATACAATCTTACTTCTTTGGTCTTCAAGGCAACCAA---CCTTTAGTT--ATCACAC------------------CTTCCTGTTTCACacaatccatttatttatttactcagcaAGTACCTGTTAAAAACCTACTGGATATCAGCATCT-GCCCCATGCTTTGGGAATACTGAGACAATAAAAGAAACCCACATCA--------TGACTTCATTCTCTGGTAGTTCAGCTCTGAGGCTAGCAGGATACAGGTGAGCTTAGGTAGGGATAAGAGTATTCTCTTTGATGATTCTCAAGTTTTTAACTGTATTCAGAGAATGCTATGTAGTTTCTCTCTGCTTCACCTACTAAATTATAATCTCAGAATTTGCAGTGCTGAGCCTGTTGCCCAATACATAGGAAATGCTTAGTAA--GAGTATGAAGCGTAAGACTGAACTGTTctgaaagacaatttttaaat-tagtgcTTGGTAT

a score=22176
s chr3           105864559 860 + 160039680 Tttgttttgatatacagtctttctgaatagcctaagctggtctcaaacccaaaatctttctgcctccgcctccccagtgttc--gcgttataggcatgaaccacc-acacccAAACCATGGCCAGCTTTATGGCAGTCACTTAGCTTCTTTAGTTGTTGTTTCTTTGGCTTTGGTGACACCATTCTCTACAGGAGTCTTTCAGCTTCAGGCTCTTTTATGGGTGCTTTCTCCCCTGCCTGCGTTGGGCTCCCCAGGGTCTGCCTTTACCTACTGTTTTCCTCTCT------TTTTCCTGTGTATCTCTTCCGTTCTTATGATAGTGGCCAT-TGCATATGTGC-----------CTGTGAGT------------GCTTTCCAAACCG--GCATGCATCTGCGTTCAGATGCCTCCCACTTGGCCTG-CCAGGGGTTGCCCCCTCA---GTGAATGCATTGCTTCT-TCCCATCCAGCCTTCAAATCATCTGCTGATTTGGTTTCTCTCTTCACTGGATGTGTCAGG---CTTCGGGGGTTCTCACTCACAGGGGAGCTCAGAGTCCATATATGGATGGACCTCAAGCT---------------------CATCACTTTCCTGCCTCAAGTCCTCCAGCACTCTCAGAAACGATTAATCAATCCAATTACAGTTCATATCCTCACGAAAATACCCGACAGCAGCAAGTCCTTCTTCCCCCACAGCTTTACCTTCTATGGcagaagtctgcgagctgtgcctcctgggccagatctggcttgcttcccgtttttgaaaataaagttgtattggaacatggccatgtccgtccaca-tacatattgtctatggctgtttctgtgctacaatcatagtggtgagtagttgccacagagaccatctggccgacaagatctcacatgctta
s HiC_scaffold_1 116493568 836 - 233722169 tttatttagagacaagttcttgctacattgtccaagctgggctcagacttgaaATCCTCTTGCTTTTAGTTtatcagagttctgggattacaggcatgagcctccTACATCTGA-----------TTTTCTG--------------TGCTTTGTTATTGGCACCTTGTCTTCTGC----CCATCCACT--------------------GACTCCT-----------------------------AGGACCCTCAGACTCTGCCCTAGCCTGCTGCCCTTCTCCCTCCCACCTTTTCCTGTTAGTTTCTT--ATTCTCATGATTGTGACCATACACACATGTGTAGTTTCCAAATTTGTGTGTCAAGAAGTCTGGGCTCCATAAGCTGCTGTAAATGTCCCTGCTTGGCTGCCTCTGAATTTGACTGTCCCAATCTTTCTTCCTtacaaataaatgtgtttttcctATTCCATTAAACCTACAGATCATCTATTGATTTTGGTTCTGTCATCACTAAACCAATCAGGACTCTTTCTGGGT----GCTCACAGAAGAGTTCATATTCCTTATATGGAAGAAGTTTGAGCTAAGAATGTAAAACCCTGAATTCATCATTTCCTTGCCCCAAATTCTGCAGTGCACCTTGAAGTAATTAATCAATCCTGTTATAGTTCACATTTTCACTAAAATATCTG-TGGAAGCAAATCCTTGTTCTTCTAAA---TTACCTTCTATGGCAGAAGTAGGCAAACTATGCCTCCTGGGCCAAATCTGGCTTGCTTCCCATTTTTGTGAATAAAGTTATATTGGAACCCAGCCACTCCCGTGTATAGTACTTATTGTTTATGGCTGCTTTTGTGCTACAATTGCTGGGTTAAATAGTTGTGGCTG-GGCTATGTGgtttacaaaatctaaaatattta

a score=23054
s chr3           105867665 1091 + 160039680 TACCCCTTTCTTTTCTCTTCCTGACCTTTGCTCTCTAACTTCTCCACTAATGCCTGACCACTTCTGTCAGGATAGTATCCCGGCTACCTCTCCACACCTCCCTG---GGCCTTTGCCCCTGTTCTCACTGCTGGGACTAC--TTCCCATCGTTTTCCAGGCCTCACAG----------TCTCCTTGGCTCTTCCAGTAGGAGTTAGGTTACGTGTCATTTTCTCCCAGCAGCCTT-----------AGTTTCTGAAAAGATCGTGTCTTCTCATTTCT-GTAGCCCCCACCCTGTGCTGTGTGGATAATAAATATTATGTGGTAATCTTCAGTA-GCTCTTCAAAGGCAGGAGCTGGGTTTTCATGTCC-------------------------------------------------------CTCCCCCTGC----------CCCTGCGCCTCCCCCCCC-CACC---------------------------------------------------------CCGTGTATAAACACAAT---TGATGTTACACAA-ATAAATTCTGTTAAACTCAAC-----AGAACTAAAAGATGTT-GGAGTCACCCAGGCAGAGGCCTGCCA--CTGGGTGTAGATATCACTGCTATGGGCAAAAGGAAGAACAG-TGGGAGAGGCCCCATGGTGCTCTGGGGGGCCAGGCACATTGGGACTCA-------------GAATGTATGAACACTTGCTACAGAACAGCACTGTCAGCTGACTTCTACAGAGCTGGCTTGGAAAG-TTCCCTTCTTGTCAGGTCACC-ACACAGAACTTGTATTCAGAAAAACCTATGTAAAGTTCAAGGCCCTCGAAAGGCCACTGGGCAACAGTCCAATTCTTCTGTAGCTCAGTAGCCTTTTCCTGGAGGAATGCCAGGGGCCCTGACGACCTTTTCATTCTCCAGGGCATTTAGATTGGAGACATGGTTTTGGACAATTCTAATTTCTTGAG-------------------------ACTGTAGATACTGTGGTTGTCACACAGATGAAATGGCCTTAAAACCGATGCAGACCCAATGGGCTTGGTTCCCGGGGCATCCAAGGAGAAAAACATACATGTAGGACATATTGTGTGGTGGCAAGTGTCTAGCCCAAAGATGAG-----GGGAGTAGGTTGGCTCAGCAGCCAGGATGAAAGAGAGACATGCTTATGAGGAAATTTCCTCAGACC-CTACTGGGATCTATCAGTCACAGACTAACAAGGG----GTGTATGGAAAGAAGGTG
s HiC_scaffold_1 116498230 1270 - 233722169 TACCCCATTCCTCTGTACT----GCACTTATTTTCTAACTTCTTCATTAATCCCCAAATACCTGTACT----TCTTATGTGGCCCATTCCTATATACTTCAATGTCTGGCTTATAC---TGTCCTTTCTGCCAACAACACCATTTCCAT---TTTGGGGG----AGAGGGGGAATATTTCCTTCTAGTTCTTTCTTTAGGAATCAGGTTATATATCATTT-CTTCAAGAAACCTTCCCCAAAACCCAGGTTGTGTTAAGATTCTCTCCTCTGAGTTCTAGTGGCATACAGTCTATGTTGTTTGGATATTA--TAATATATAGTAATTTTAGGTAAGTCCCTTAAAGTTGGAAGCTAgatcttctttttctgctttatttaaaACTTCCTATGGggagctggaggtgtagctcataAGTAGAGATCTTTCCtggcatatgtgaggccctgggtctaatccctagcaccaaaaaatcCACAAATGAACATACAAACAAgtctaacaacaacaaaactcaaaaaacaccgtgaataaacacaaaacacaatGTTTTGGGAGATATGGTCTGTTAAACTTAATTTAGAAGAAGTAAAAGGCATTTGGTGTCTGTAAGATGAGGGCCTGATGTTCTGGGTG-AGATATCACTGCTGTGGCCAAAGGGAAGCTTAAATGGGAGAGATTATCTAGTGTT----GGTGCTAAGGATA---AAGCTCACAAGGCTATTGTGGAATACATGAACACTTACAGAAGAATATAGATATAAGAGGACTTTCACAGAGTAGAGTTGGAAAAATTCTCCTGTTGCCAGGTTGCTTACACAGGCCTCCTAttcaaaaaaag-tatataaagttCAGGTCATTCCAAAGGTCACTGGGCAAAAGTCCAATTCCTCTGTGGCACAGAAGTCCTTTCCTGGAGGAATGCCAGAGGCTCAGAGATTCTTTTTATTCTCCAGTGTTTTTAGA-TGGAAAC-TTGCTTTATGCAACTTT-ATTTCTTGAGGATGTTTCTCCGAATATCTTTCATCACTGAAGATGCTGCAGTTGTTTTATAGATGATATGGATCTAAATCGGAGG-AGATCCAGTGAGCTTCATTCCTGAGATAT-CAAAGATAAGCAAATACATATAAGACAAAATAAGCAGAGGAAGGTGCCAACCGAAATGACCAGACATAGAGAGCAGGCTGATTCAGTAGTCAGGACAAAAGAGAGACACTGTCACCAGGAACTTCCTTCTTACCTCTGCTTGGAGCTGTACTTCGCCGACATACATGGGTGCTGTAGACAGTAAGGAAGTG

a score=46866
s chr3           105870148 3088 + 160039680 tgcggtactaagatcaaatccagtgctccatgcatgctaggca----ctctaccaatggagctgcatccccagcccAAGAAGTGAATTTTTAATTAGCAGTATCAACCAGGCATGCTTAATTTTTGGCTCCAGTCATTCTTTTTTTTTTTAA---TTGTGGAAATGTCACATGAACTAACAAAGAAGTTGTCTGAAGGTTTCTTTTTAAAT--TAAAGAATTTAAGAACACTTTAATATTCAGGCATTTAAAGAAAATGAT-------------------AAGACTTTAATAGTAGTA-------------------AGGGT---------------------------------------------------------ATGTGGTTAGA----------------------------------------------GGAATTA--------------------CCTTGAATAAGTCAT-------------------------AAAGATCACTCCTATTTTCACCCTGGTTGTCATGGACCCCACGTGGCTCGTATCCCTTATTATGCCAGtttttaaaaaaattattattattaaGATTTGTGAATTCCAAATCAGACATGTCTTCCTTAGTTGTGGTGAAATAAAACTGATTTTCTTGAAATTGCTCTTTTAGACACTGTAAGTTTAAATTGCCTTCTTTCTAAAATTTTCCAAGT----CATCACAAAAGG----CCTAGAGTTCTCT----------GACAGTTTGCTGTAAGAGGCT--TCACGGTGCTACATGGACTTTTTGGCAAACATGGCTTTGATTTCTCCCAGAGAGAAGTTTCCCCTTTAAAAGCCTGCTCTGTGATCATAATTGATCACAGACAAGCACCTGTGTCATAATTGCTGCTGACATAGCAGCCCGCATCACCGGAGGATGCCTGGGTGTCAGCTTGCCTTCAGGTGCTCAGCTAGAC-TTCATCAAGCACATGTGGAGAGCTCTGTATTAGGTTAATGTGCTAACATTAACACTGGTGAGCAAAGTAT-------GATCCT----CGTGCT------CAAAACGC----------------TGAGAATCCAGGTAAGCAGAGCAG--ATAAGCAAAGATGCTTACGGCCCTTCAATCAGTCTTGGACTGGAAGTGAATGATCAG-----AGTTAGGAGACGATATTATCCCGACATTGGATAATAAGACTTTTAAAGTGAGTAGGTGACTCCTGATCCTAGACCTAGAGGGATT---------------------------------------------AGTTTAACTTTA-CCAAGA-ATGAGTG-GAACTGGTGTCTgtcatgttata--tgtctgtaatcccagcacttgatggccaaggcagaatcatgagtt-------caaatccccccatcttgggctTGTCAGAGAGATTGGGTTCGGGG-------------------------GTAGGGGAGAGAAAGGGGAGAATTATGGTA----AAATAggacctaactagatggctcagcaggtataggtacttgctgccaagcctgaggacttgagttcaatcccagggacaccacagaggaatccTGTAAGGa--gcctactccttatacaaccacgatcacctgctcaggagtggcaccacccacagtggt--ctgggccctcccacatcaatcattc-atcgagaaaatgcccccataga------------catgcccacaagccaatgtgatgg-aggcagttcctcagttgtaattctttcttcccagatacgttga--ggtttgtgtcaaactcaccaaaactaaccaCAGGTTAGAATT-------------GAAACATGACCTCACCCTAAGAATTCAGACCCCAGTGACA--------------AAAAGGAATGACAGGCTGAAGGGTGTGTGGGATGACGTGGCTTCAAAGACCAAGAGATTAACCAGCCTCTGTC--GACTGTGCAGGATAAAAAACGTTCTTCTTTCCTGAGTTCAGGACTTAGT--------------TGCATTCACGGAATAGCAAATGTTAATAAAGCTAACAC--CTAGTAAAAA-GGGAGGACAAGAGTAT------GGCTTATCTGGGGCTGGGGGCTGGGGTAGA----GTGGGGGACTACCTTCTTAG-ATGCT--------------------GCTTTGGTATCCTCACCTCAG-----------------TGTGCCTGGCT-AAGATCACTGTAGTCTTAGGAATCTGGAATGCTGTTCCTTTGCTGATA-----AGTCATTCTCCTAAAAAAATAAATAAATAAGCAGATATACAAGACAAAAAAAAAAAAAAAGTCTAGCCCTTTT----GCTGGTGTAAGCAAAGAAGACAGATGCTCGAAGCACGGAG--TCTAAAGAACTCGGGAGCTGACAAGCTGTGTCTCCTTGGCATAGAGGATCCCATTGCCATAAATGGAAGTGGCGTTTCAAGTGTTGTTTTTGCCAGGTCTCCCGGACTTAAATGGAACTAAATGCTCTTGCAAAGATGGAGAAGAGAATGAAGGAGAGGAGGGGGCGTGTCTGGGCATGGAAACTGGCTGCCAGCCCTTGCTCCAGAGGTCCAAGTTCAAATATGCTTGCAGGCAAGCCTCAGTTAAGTTTTTTTGTCCTCATACAATGAAGCTGTTGTATGGCCAGAGGCTGG-AGCAGGCCACTGGCTTTCCAGAGTCCAACAGCCAGCACCTTTTGGACTTCCCCTTGGTTCTCCTTCTGTT-----------CTAGAGGACACGAATACTTCT--CATCCACCCTGG-TATAAGCTCTAGGAAGCAGGAGATGCACTGCTCATGAATGAGAGTCTCAGCCCT-GTTAGCACGCAGCTTCAGGAAGTGACAGAGCAATCAGATCAGATAATAAAGATATTCAGTAGATCAAGAAGCCATTAAGCATTTTGTCCTGCTTTTAAGCATTTGCCCTGCCCCCAACAACCATTTTAGATGATGGAATTCCTGGACTGCTTGGTTCCTTTTGCTATGTCAGTTTAAATTTGTAAGCTCCCCCTACAGGAATGACTTGACTAGATGCCCATCTGATTTTTGAAGTCCAGAGGGATTTCTGTGCCTACTGCTCGCA-GACTTAATCAGATGATTCTTGAAATGGCCCTGACCCTTTCGTTGGGAACAATTTCTAAAGTGATAAATTTTCTCCCCACCAAGCCTCTAAGTATTTctccttccctccctcccttcccccttcccttcctctttcccCTGCACTCCTCCATGTGTTCATGCTTGTGTATGTGTGCATGCATGATTTCTAAACAGTAAATCTTAAGCAAGTTGTTACAAAAGACAAT--AGGATTAGAGGTGAGAGTTAGTAGAGGCATTTAACCACAGTGATaataaaatgggcatttatttggttttgactctgccaggtactgttaaaggtacttaatgaattgaattcatataatactcagtgtgactctgtgttattatcatcaacaccttaaaaatggagaaact
s HiC_scaffold_1 116499694 3227 - 233722169 tgaggTGCTTGGGGTAAGCCCAGGACCTTACCCATGCTAAGGATGTGCTCCGCCAATG-AGCTACACTTCCAACCCAAGAAGTGTATTTTTAGTGACTGATATCATCCTGATATGCTCAATTTG-GGATctaatcattcttttt------aaaatttatgaagataT---ATGAACTAACAAAGCAAATATAT-----------CTTAAATGCCTAAGTATTTAAGga-------------aagtatttaaagaaaatggtggcctgaatgtggtggtgcatgcctgtaatcctagtgctcatgaggctgaggcaggagggttgttgcaagtttgaggctagccttggctacatagtgagttcaaggacagcctggactatatagtgagaccctgtctgaacctcctcccctcaaaaaaagtaaaaaccaatTTTGGTAATTAAAGATGCAGGAGGAAATCTCCCTTGAATAAATGAGTACTAGTTAAAGTGAGTCAACAGAAAaagatcat--atatttttattcttgttatcaTAGACTCCATATATCTTATATTGCTAattatattgcttt-------aatt----ttcttaaaat----------------agataTGTATCCCTTAGGCATAATAAAATAAGATTGTGTGTCTCCAAA--------------------------ACTtaccttcttcctct--ttctttaaaTGGTATGTCAAGAAAGGGAAGTCTGGTGATCTCCCTGGTACTAAGACAGTTTGTCCtaagaaaatgttgaaaatgcTGCTTGAAATTTTACCCTCAC-TGGATTTGGCTTTTCAAAAAGGGAAGTTTTGCCTTTAAAGATAAATACCGT-ATCATATATTATTA--------------TGTCACAATAACTGTTTCCATATCTGCCTGCATTG--GGATGATGATTTGATGACAGGTTTCCTTCAGGTGCTCAGCAAGAGGTCCATTGAACACCTATGGAGAACTCATAGTTAAGCTTG-GAGCTATTGGTTAATCCAGTG--CAAAGTATTTGTTGGGCTCCTACACCCTGCTAGACatcagaaagcaaaacaagaagTATAGTGAGCATCCAGGTAACGAGATAAGCTATGAGCAAATAAGCATATATCAGTTTGAGCAGTGCTGTTCTAGATGTGAATGATTGGGAAGAAGTAAGGAAGC--CATTATTCTGAGGTTGGGTGAAAAGAGCTCTACAGAGAGTAAGGGATACATGATCCTAGACCTTGACGGAGTCAGATGAAAATAATGGGGAAATAAACGAGTAGATGAAGTGGTTGCAGGAAAACTTGAACCAAGAGATAAATTTGAATTGGTGGATGATAGGAAGCAATTAACTATAGGCTAAGGAGCAGAAGG--AAGGCATGAGTGTGAGTTGTTAAAGCAAAGTTAGACATAGCATGTTGGTGACAGAAGTTGGCCTCTGAGTAGACTTTGCAGCACCAGTCAAATGGAAAGTGACAAAGAGACTGGGTTGAGGGTATTAAGAAAAGGactggagaagaaag----gaaggcacA-------------CAGCCTG------TGCTTTGTACCTGAAGGAGGC---AGGTGTCTGCTGAAAGAATGATTGACTACTTAAACCATTAATATGACTTGTTGATTACTGAAA--------AGGGGTGACTGTGAAATATAACTTTAAGGATTTGAACGTGAG--tgacaacaaagaaagaaaaaggtgtaTTATTACAATGAAAAGGGTTGGGAGGCAG---CAGAGATGAAGTG---GATCCAAAGACAAATTGACTTGTTATTGTCAG-CTC-----------CCACAAGGTAGAATTTTGCTCCTTCTCTGAAATAT------------AGGAGTTAGAATACAGTGATTTGTCAATGCATGTTAATAAGAATCTaataatgggggctggg------gatttagcttagtggcataagcg---------cctctgcctggcaagtgcaaggt-----------------cgtgagtttggtccctagtaccacacacacacacacacacacacacacacacacacacacgaatctAATAATGCAAGTAAGTATGGGGAGACAAGGGCATAGTCTGGGCTTCTCTGATGTT-----CTAAGGTAGCTCATGTTGGGGATT--CTTCTCagtgtgcttttttcttttagcttctttggcctcagtttcctcatctaaagGATGGGGAAAGTGACCTATGGCTGACTTAACACCTTTCTTGTGTAAATAACTAGTGACTCTATTCTTTGACTGATATTTTTGGtccttc----aaaaaaat------------------------ttaaaaagaacaactcTTCTGGCCTCCCTCCTCTCTAGTGGGAGGAGAAGACATGAATGTATGAGGCACAGAGAATCTAAGGGCCTTGTGAGCTGAAGGGCTGTGTCTCACTTGTTT----GATCCCATTGCCATAAATGGAAGTGGTGTCTGGAGTGTTGTTTTTgccatgtctcctggacttaaATGGAACTAAATTCTCTTGCAAAGATGGAGAGGAGAGCAAAGG---GGAGGGGGTGT---TGGGGTTGGGAGCTGGCTGCTAGTCTGTGTACTGAAGGTCCAAGTTCAAAT-TGCTTGCAAGAAAGCTTCGGTTCAATTTTT--GTCCTCGCATAATGGGGCTGTTGTGTGTCCAGAGGCTGGGAGAAGGCAACTGGATTCCTAGAGCTCAATGGCcagcatctttttcattcctttttgatTCTCTCTGTGTTAGAGACAAATCTTACAGGACACATATATTTCTATTAGTTTCCCAGGCTGCAAACTCGAAGAAACAAT-------CAGCACATCCACAAG-TCCACACCCCTCATTAGCACGTAGCCTCAGTGAGTTGTTCAGCAAGTATGT----GAATGGAGACTTTCAGTGAGATGAAAAGCAGTCAAACACTTTACCGTTCCTT-AAACACTTACTCTGCCTATGATGACCATTTTAGGTGGGTGATTTCCTGGGCTACTGGTTTTTTGGGGCTGTGTTAACTTAATTTTGTAAAGTGTCCCTACTAGAATGTGTTGAATAAAGGCCCATCTGATTTCAAAAGTCCAGAGGGCTTTCTGTGCCTATTGCTTACAGGATCTAATCAGATGGTTCTTAAAATGCTTCCAACCCTCTTTTTGGGAACAATTTCTaaagtgat-aatttttttttcactaagcCTCTGAATGATAA------------------------------CTTTTTAAACATGAAATCTT------------------------------------TTTATACACAGTGAAGCTTATGCAAGTTATCACaaagggaaactgaggtttagagGTGGGGATGTGTGGACGCCTTTAGATGTAATGATAAT--AGTTGGCATTTATTTGCTACT--CTGTGCTAGATACTGTTAGAAGTACTTTATGAATTTAAATAACTTAATTCTCTATAAGG-TAAATATTATTATCTTCATCAACTTAAAGGTAGGGAAACT

a score=11378
s chr3           105874183 333 + 160039680 ctgcattcaccaccatgcccagctctGCCTCTTTTTTGTATTTGCGTCATTTCGGTACTCCCTGAGACT---TTCTCGGCAGGTTATACATAGCCCTTCCCCGAGGGATCAGTTTTTCCCATTCCAGGTCATGGGAAGGGGCAAGGAGGAGAAGACTTCCTTTTCAAGAGCCTGTCAGAAAACCATGTTTGGAAAGGAACACATGAAAATTGATCAGTAAAAACAGTCAAGAGCTTACCAGTCCTCTGTGTATGACAGGGTGCCCTCAGCAGCTT-TAGGGTATAGGGGGAGACCAGCCCTGCTTTTTTTAGGAACTCAGCATTGAGAAAACCAGAT
s HiC_scaffold_1 116503213 304 - 233722169 ctacatacacacatgtgtacaaGCCAGCCCACTAGCTATATTCACATCATTCATGTGCTTCCAGAGGCTCTTTTCTTGCTAGGTTATACATAGATCTTCCCTGAAGGATTAATTCTTCCCCATCCAGGTcgtgggaaggggaaggaaggatgTGGCTTCCTTTTGAAGGGCCTGCCAGAAAG-CATGTCTGGAGAGGAATACATCAAAATTGATCAATATGAATTGTAA------------------------------GTGTAATCAGCAGCTCGCAGGTCACATAAAGAAAACACTCTTA--TCTTTTAGGAATTCAGTATTGATAAAAGCAAat

a score=10899
s chr3           105876092 435 + 160039680 TGATCTCCTGTCTGTTGATTATTATGGATGAGTAGCGTCGCCCATGG-TCACAGAAGCCTGTCAGGGCAGGGGTCATGCGTCAGCTGTTGGGACACTTAGCTGCCCTGGTGACAGGCCTCTCTAACCTGGTCCCGTGCCAGCAGATCCCAGCAGCTCTTCTGCCTGGTCTGCTATCAAGCTCAACCACCTTCGCCCTTGAACCAGGCTGAGGGCTTTAGAGGAAGGGCCAT----------------------------TGGTACACAGC---TTCAGACAATGCTCAGCCCTGGAAAGTGACCCAAAGCAGCCTTCACC-CTGCTTTCCAGGGCCT--GGGCAGAGGCCACTGTTATAGGAAAGACTGAGTCTTCAGAGAAAGGTAAGTCTGAGAGGACTGTCAGCAGGCCCAAGGACAGACATGCTTAC----AATATTCTAATAACTGGAGTCTTTCTGGAGTAAAGACAA
s HiC_scaffold_1 116505929 469 - 233722169 tgaTCCTCTCTTTGCTGAGCATTATGGATAAACAAGGTTACCCAAAAAGCATACTAGCCTGTGAGGTC-TGGATCAAGCTTCAGCTACCGAGACCTT--GCTGGCCTGCTGATAGGCTTGTCTGAATTGGTCATATTCTGACAGATCCCAGTAGTTCGCTTGCCAGATCTGTTATCAGCTTCTTC--CCTTTTGCCTTGAACTAGGCCAAGGTCTCCTGGAGAAGTACCATGCTGTTGTCTTTCATATCAAGGCCTTCATTGAATACAAAATGATCAGGCAATGCTAAACTCTGACTAGTGTAACTGACCAACCTTCACCTCTCCTTATCAGAGTCTCAAAGTGGAGGACACTGTTACAGGAAAGACTTAAGTCTCTGGAAAAGGTAGACTTGAAGGATGATTTGCCATGTCCAAAAAGAGCCATTCTCACTTAGACTACTTcagagaattttaattttctggattaCAGATGA

a score=14248
s chr3           105881655 1128 + 160039680 CTATACTGACAGACCACGGGTCCATAGAGAATGCAGTGAGGAA--GAGTGAGGGAGTGGTTATGAAGAGAAAGGAAGAGACTCTGGGA-------GACATGCTTACTTTGGTGGTTGT--AATGAGTG---ATAGAAATAAA-CGTATGCCATGATTTACCAAAATGTGTACTTCAT-GTGCGCTGCATTGCACATCAATGCAAGTTTAAACAAAATGGAATTCATTTTAGACTGATACTCACTAATAATCAGACAACCCA-AATAATAATGCCCTTCCTATGTGCTGTGGAGCCCGACATACCCATTTTCTTCCA---CTTAAACTGAGAATATTCCATGGTCTTGATCCTTAGCGTTGACTTCACAATTCA-----------ACACCTGCAGTTTGAAAACG--------------------------TCATGTTAAGA---TGTAACTGGGAAG---AGA----------------------------------------------------------------------------AGGATTTCA------------------------------------------------------------CAGAAATGGCCTCATCACTTCATGGAACAAGCCCTGCAGAGGCAGTTTCTGTGTCATTAGCACAAATCTTCCTCTTTTCTACTGTCTATGTAGTTGAGGCATCACCAAGTTCTACCATTCCTAGAAGTGCCAGCCTTTCGAATTCTTGGCTCACAGAC-------------TCTCTTGCTACTTACTGTCTG---ACCTGGGCGAGGGATCACCACTTTTAT--------GAAAACTCTCCGTTGTGAG-------GAGTCGGG--------------GGTCCTTGGGGGACACTGATGCAGAGGCTCCCGA--GATTGATGACTGCATAGTTGCTAAAGGTGGCGAAGGCCTTCAGACTTCAGCCACCTG----------CTCTTGGCTGTTTCTCTCATAAAGGAAAGTAAGCCAGCTCCGGCAAGAATCCCATCTCTGAAATATCTTAATGGTTTCCTGGAGAGGTTACTTGCA-------------------------------------------------GTTGTTGCTAGT-----TTTGCCCTCA------------ATATTTGAAGATGGAA------------------------------------------------------------------------------------TGCAAGAAGATCTGGCTTGCTAATGTACAGCACA---------TGACTATA-------------GAGGCCACTAAAGAAGAGGGA-AACTCATGAAGCCATTGGAAGGAAGCAGAGA---AAAACAAAACAAAACAAGCAATAAGGGAAACCTAGGCTTGGGATAGCCTCATTCTACCATGAATTAGTGCTCCGGTA---ACTTAATAATTATGTGCCTAGTGGTCTCTTCAATTACACATCTCTCAGTGTCACAAACAGTGGTGTAATTTGCCCATTAGGTCCAAATTA
s HiC_scaffold_1 116516195 1541 - 233722169 CTACAGTGAAAGATAAGCAGT---TAGGGGAAGAAATGGGTAAAGGATGGAGAGAGAGATTACAAAGCGGTATGTGGAAACTTTGGGGAGCCATGGGCATGTTTATTATGTTCATTGTTTAATGATTTCACACACATATAGATCACATTGGATACTTTA--AATATGTGCAGTTTATTGCATGTTA-ATTTTACTTCAATAAAGATATAAAACTAGAGGAATATATTTTAGATTGCTAGCCAACAACCAAAACACACACCACAACAAAAATACCCTTACTCTGTGTAAAGTAATCTGACATAtccattttattctatttctttaattgaaattatacttcagTCATGATCAACTAGTTTGATTTCATAATTCACTCCTGTGTTGATACTTACACTTTgaaaacactattttgttattgttattattattattattttaagacagTGTTGCTATGAAGtctagactgaccttgaactcactgtgtggccaggctgggcttggactcattgctattctcctgcctccacctcctgagtgctgggattacaggtgtgttctgCCATGCCTAGTTTTGAAAACACTATTTTAAACACTATTGAAAAATGAACCCAAAACAGTCTCTTAGTTACACTGAA-AAGTCACTCAGAGGAAATTTCTGTATCATTACCATTGAAGTTTATCTTCTCTTCTGTTTACAAAGTTGAG-CAATATGGAACCCTAACATACTCTGAGGTCCTAATCTTTCAGATTCTTATATTGGAGACAGACTTCTTCCATTCCCTTGTCACCATCTTTCTGCTGATTTGTTTGcaagatttttcattttatttcacagtgaaaattatttattctgtGATGACTTGAGTCAGGAGAAATATTTTGCAGGGCTTTGGAGGAC-CTGGGATGGCAGCTGACTACTGACTGCTGATTGCCCAGTTGTTAA-GGTTGCCAAGGCCTTTGGACTTTACTAACCTGGGAACAGCTGCTACTAGCTGCTGTT-TCACAAAGGAAAACAAGCCGGTTCTGGTAGACAACCCActttt--------tttccagtttccttgagaatttattttcaaatttgtttatGCATTGAGGAATGGATGGAAAAGAGAACCTTCTTAAAAGATTTTATTGGTACctatttgcatatatattatatatatatatatgcaaacagaaatagaaaactcatatatatatatgtactatatacatatataatgattacattcattgtagggatttggtacatgtatataaccaTGAGAAGGGATCCTATTTGTTAATGTACAGTATAATATCTGGATGACTGTGTCTGTGTACAGCTGGACCCAGCAAAGAGGAGAAATAAATCATGTACCTAG-AGAAGGAAATAGAGACCaaatataaagacaaataaaGACTAAAG-AAACCTAGCTTTGGTATAGTCTCAATCTGCTATGCATTAGTGCTCCTATATGCAATTGGATACTATGTGCCTAGTGGTCTCTTAAATTATACATCTCTCCATATCA-AGGAAGTGATGTAATTTGCAAATTAGGTCCATTTTA

a score=33783
s chr3           105890070 3259 + 160039680 gctcAGAAGAACACTGATTTCAACAAGAGCCTCTAAAGTATTTAATATAGAGTATGAAAGGGACTCCAA-CCAAATA--AGCAAAGAATCCACCCAGCAGTAGAAAC--CATCAG-------AGGACC-----------TGCAGGAAAGGAGCCAGGTGTTCATAAATGTCATCTCCACGACTT-CTCACACCTCTCTG--------------TATCTCTTTGAATctcatttgacagttgtggaaatgggctcacaatagtta--gtcacttgctgaagatcacgcagctgcagaagggcagagctgggcttTTGAAACACTCC----CTCTGGCCTGTGTTTTTGTGGGCTGAAATTCAGTAATGTTCAACTCAGGGCAGATCTCCAGAACAT--------TAACAAGTTAGGAGGTTTCTATGTTCAGGGAAAGGA----AGTGTGAAAGCCTAACCTCTATCT------GCTGGCAG-------CTTGGATATGTGGAGA--------GGAGAGCAGAAGGCTGCTGGCAGGGGCCTTTCTGCTTTACTGCAGCGATAGCTGCTGGGTCCCGTCAACTCACCCTGCAATGTCAGG-CAGCACAGAGTCATCCAGAGAGAGAATCTCTTAGTGATGTATGAGACCTGCTGGCCAAAGACAAGGAGTATGGGCTCTTAGGTTACTCAGCATTCCT--------CCCCACCACAAGGAGAGATC-TTTAGgattcttaacctgtgggactcatccactttggggtccaatgaccctttcacaagg-----gtttct-------taagaccatagtaaatatcagatgtttgcattacaatccataactgaagcaaa--------------catagttatcaa----tagcaacaagat----aatttcatg-atgaggggaggtcagtacaac------atgaggaac-----------------tgtattaaaggaatacag-----------cattagga-aggttgagaaccactgTTCTAGAAGATTCCTGAGACCTGAGACAATTCCTAGCAAGTACA------------------------------GGGTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtatgtgt---gtgtgGTGAGACAGAG------------------------CCA--------CCATAACCTGAATAACG-TAGGCTGTAAACTGGAGAACCACAGTAGCCTTCCCTTATGCAGC----TCTATCAGAGAGAGAATGATGACGCTGGAAATAGTGTGGAGTCTTGAGGGCCTAACTGTGAAGAGACTGTCCCGGCAGCACTTGGGGTTGGTGCAGATGATAGTGTCTGTATCTCT--GGTGTCCTGCAGGACCCCTTTGCCTCTCCTGGTCTTAGACAAAtgcatcagtcacttttctcatcctttcaacacaataccagacaataaaacttaaagacgcaaacagtggttctgactcatggtttcaggccattgcagcagggaggttttggcaggagcaatgttctttacagtgaagcagtgacccagtgggacctggctggtataaacctttaaagggccacccatgctgacacatttcctga--agc----taaacaggcttctcctaccgcctgcaaattatcatcaaaagctgggaagccagggtttaaaaattgaactggtcagagcatagttcaaa----ttcaaaccaTTA-----TCAAAAGTGCCCTGCACTGTCCACAGTAGGACAGCATCTGGGTGACTCTCCCAGCTGCTTGCCCACCATCCTTCCACCTCTGGTTCTCACACGTTCCAGCTCTTCTTCTTGAGGCACAAAAATAATGGGGCTGGAAGCTGTCTCAGGATGTTTGGGTCCCACATATACAGAAACTGAGCAGAAAAAAAAAAAAAAAAACAAAACAGGCTATAAGACCTCAAGTGT-CAACATGGCCCATGTGTTCTGTGAAAGGTCCTGCTCTGCCCTGGCCAGaaagaaaaaaaaaaaaaagaaagaaaaaagaaaaaGCACTAAAAGTTCACTAACCTGGTTGTTTAAATATAGGAAAGGAAACAGATGCTGGCTGGC-----------------------GGAAGTGGGTTG------------------GGGGGTGGTGCTTGAAGCCTAACCTCTGCTGATTTGCTGTGGGACCTTTCTGTTGTTACCCTGGGCTAT----ATC---------TCCCTCAG--AGCTCCTCCTCATGATAGACA-AGAGAGGGTTATTTTTAAGCTGATCTTTGTGACTTCCTTTTGGCTTGTGTCCT------CTGCTT-------CCTTGGTAGTCCT---ATTCTGGCACAGC-----CTGTCAGGCTGTGGGAGGTGAGAGCTGTTTTTGTATGGGCAAATGGCAAAGGCTGAGTGGGGAGCCCAATGGTGCCGACTCGGTCAGGCTGAACGCAATCCCTCCACCCCCCAATGGACTCGTGACAGGACAGTGTGGAGGAGTCCCAGCTTCAGGCCTAAGGCTTAGTCTCAGAGTGTGTAGGTAGCACACAGCAT--CCACTTCGGAATCCTCTGACCGGATCCGTAGTATCCAGATAAAT-ACAGGGGTGCTACTG-TGTCCTCAAATGGTCTGTCCTCCGAAGAGCTCCCCTTTCTGGAACCAGGCTGGGCTGCCCTCTGTGGTCTCCGAGGTCTCTCTGAGTTCCTGGGGAGGATAGGATGTCTGGCTAGGTGCACTTCTAGCATCCTCAGACTGTG-TGCTGATGAATCAGCAAC-CTGTCCCAGTCAGTCTCTTCACCGTA-CATATCAAAGGAGGCGAGTGGAGATCTCGGTAGCTCCTGGGGGTGG-----------------GG---GACGGCCTCAACCGAGTTCCTGTTGATCCCTCTCACTTCCTCTTGTCTTCAGTATATGGTGGAGGCCCTGAAGTGCAGCTGGTGCCCAATGGCTGCCTGCGATAATGCATGTCTGTGGTTTCTCGTTCAACCTCTGG--TTACCTCCCGGAAGGGCCCTCCTTAGTCTTCTC------AGGAGATTGCTATGGTCCCCAGCTCTAATCAGGGATCACACAGAGCCACACCCTCTTCTGATTTCAAAGAtctctctctctctctctctctctctctctctctctctctcATATCATACATGCAGGCTGAAGCCTGGGAGGGAATAGTTTAGAAA-TTAGTACTTCCTTGCCAAGACCCAAGAGAACACAGATCAGGTCTCACAGAAGGTAGAAGTCTTGGTTGAGTAGCCCTTGTGTAGTCAGGCAAAATAAGCT--AGTCTG-TGTCTTTCCACAGTAACT-CCCATGTGACGCTTAGAAAATTCTTTCCACTTCAGAGTCCATGTCAAGAAATAGTTGGGTTTTTGAGATTTCCCCCTGCAGACGAAGAGCTGGCTCTGCACGACCTTTCTGTTGGGCCCAAGCTTCT-GACGCTCAACCTCAGCTA-----CTGCAGA-------------------AGTGAGGAAAATCCAGCTCTCAAAGCAGCAGCTGGATTGTTGATCTGCTCCAGGCCTTGTGTCA--CCTGACTCCAGCAGCTGCTATCCAAGCCTCTGG
s HiC_scaffold_1 116518671 3288 - 233722169 GCTGAGTAAGATTCTGGCTTCAACAAGAAG-TCTGAAGTTTTTGATGTAGACTTTGAAGGAGAACACAAGccaaacagaaatagaaaactcATGATGCAACAGAAAGTGCATCAGCCCACTGAGGACCCATTATGAGCTTCCAGGAAAGG-------TGTTTATAAATATCATCTTCTTGCCTTTCCCCCATCtctttgaggtggtttttactGACCAATTTCAGTCTCACTTTACAGATGTGGCAGTTGGCTCACGAAAATTAAAGTAACTTGCTCTAACTCAAACATC--CACTAGGTGACAGCTGGAGTTTTGGATCCTGGCAGAACTCCAGCCTGTGTTTTTATGGGCTGGAATTCAGAAACACT--GCTCCGAGAAAATTCCCAGAATATAAAACATTCAACTAGCTGGGAGTTTGCTATATCTAAGGAAAGGACAACAGTTTTAAAGGCAGGCCTCTCTCTTTCTTGGCTGGGACAAATGACCTGGGTTATGTGCAAATGAGTCCAGGGGAGCAGAATCCTGCCGACAGGAGCCATCCTTACTATCTTCAATGACAATTGCTACTTTCAGTGAGGTCATCCTGCAGTGCCAGGACGGCATAAAATCACTCACAGAGAATAATTCTTCGTA-------------GGTGGCCTACGAGAAGACATATGAGCTGTTGGTTTACTCAGTGTTGTGAGTCAAGATCTCACCAAGAGGAGAGATTATCTAGAAGTTTT-----TTGAGACACCTCTCCTC------CCACCAAATGTTTCATGAGATATATGTGTGTGATAAAATAGGACCACAA-GATCATAAGATTTTGGGTCTAAGGAGC-CAGCAGAAGCAGGAAAAGATTCTAGTGCATGGTTATCGGGACTTGGC--CAACATCCTCAACTGCCTGCATGAGGGGTG--TGGTACaaagatgaaataagaaacaaagacaaatttaATAATGCATGGCAGGGGGACAGGGAGGTCAATGCCTCAGGACAGGCAGAGA----------CAAAGACATCCCGAGACAGCCACTACTTATTAGTGTGTACAATTATCTGAGGGATTATCAGATGACCCAGAGGGTAGTG---ATGACTTTATGCTAATGAAGATCTCTATGTTGATGAAGACAGTGGGGAGAGATAGTAGGTTAAAAAGGAGTTTGTTCTTTTCCAAGGTGAATccctatttttattactactgggTTCTCAA----GGAACCAGAGTGTCTTTAGTTGGTGCTGCAGTCTTGATATGGGGCAGCACAATGTCACAGGAC----CATCGAGTCCTGA-------ACTGTGA----------CAGGAGGCACGCAGAATTAT-----------GTTCCTATATCCCACAGCCAGCCTGCATGGC------AAGACACTAGGCCTCAGGCAAGCCCTGACTGCAATTCTCCCA----------ACAATTATATAGAATGATTCTCAA-----CAGATGGGGCCTCCTACCCCC---------------CAAAAAACTAGCTTTGTTAGA-----------TAAAAGTGA---------------GAATGTTGCTGGAAT-------CAAAGGCCTG--------AATTCATCTCAAGACCAGCAGTATGAAAAGGTTGCACCATCAGCCCTCAGGC------CTAGGGCTGTGAAACAAGTTACTACATATATTTCTGGTTTTCTTGAGGTTCCAAACCCTTCATGCTATCCGGCATTGGAAGGCATCATGCACTGCTTA----------------GATGGACCTTATCAGTtgcctgccctccctccctcaaGCTAGGACTTCTTCAGACCTCAGCTTTGCTACTCACTGTACAAAA-TAATGGATTTGGAGGA-----CAGGAC-CCCAGGCTACACTCACCCAGTAGC--AGCTGAGAAGGACCA-------CAGAGCAGGCCACAAGGCCTGAGAGGCACAGTATGCTCTGTGTGTTGTGTAGAAGGCTTTGTTTTTCCTGGGC-------------------------------AGAAATGCTCTCACAAGTTCACTAACCTGGTTGTTTAAATATAGGAGAGGAAACAGATGCTGGCTGGAGAGGAAGTCCCTGAGACAAGTAGGGCAGTGGCTTGCCCAGGCTGATAAGAGCCAGGGGTGG-GCTCCAGGTTTAACCTCTGCTGATTTGCTTTGAGGCCTTTCTTATGTGGACATGAGCCATTACCATCATAACTTGGCTCCTTAGCAAGCTCCTCCCCCTGGCTGACATAGAGGGGGTTATTTTTAAGTTGATATTTGTGACTTCCGTTTGGCTTACCTCCTACTCCCCTGTCTCAAATACCCTGAACAGGCCTCCAACTCCAGCAGAGCAGCAGCTGGCTGGCCCTGGGAAAGGAAGACTGCTTGTACATGTGC-AGTGGC-ATGGCTGAGGAGGGGG-CCAAGGACACTGTCCTGG-CAGGCAAAGCACAGG---------CTTCACTGATCTCTTGATAGGACTGAGTAGAGG-TTCTCA--CTTGGGCTCAAGTCCTGG-CTCAGTGTGGGGAGGCAGC---CAGCTCTGTCACTCAGGAAT----TGACCCAACCTGAGGCATCCAGATAAATGGTAGGAACGCCATTGTTGGCATTGCCCAGTGAACCCTCCAGGGAACTTTACTTTCTGAGACCAAGCTGTGCTGACCTT----GTCCCTCTAGTTTTGC--AGTTCCGGGAG-----AGCATGTCCGGCTGGGTGTACTAGCAGCATCCTCAAATTGTATTGTGGATGAATCATAGCCACAGTCCTACCCACTCCACCCACCACAGTAGAGCAGGGGAGATGGACTGACGCCACTGTGACTCCCAGCAGCTGCCCTACCCACAAATTCTGGCTCAAAAGCTTCCTCAGAACTCCTGTAGCTATGTCTAGTTCCCTCCAGTTCCCAGCTCACAGAGGAGCAT-----------------CCCAAAATCTATCTGGAAGAACCAGTGCCCATAACCTCTGGCACAAGGGACAGTTTTAGCTCCTGGTAGGGACCTCTTTCTTTGTCACATTGGAAGGACACCAACAGAGTCCACATTTCCACCAAGAAAC--------GTGAGACCCC--------------GATTTTTCTCTCAATCTTTCTTTGGGT----------------TATTAAACACCCA-----AAGCCCTACAGAATGCTGCTTAGGAACCTGATGCTTCCTCTCAAAAGTATAAGAAAGCA---GGCTGTGCTTTTAGCAGGTGGGAGTCCTGGTTGAGTGACTTCTGTGAGACCAGGCAGACCAAGATTCAGACTGATTTCCCTCCATAGTAACcatccaagagatgctcagaggaTTCTTTCCAGGTTAGTATTTACAGCAAGAAGTAGATTTGCTCTAGAGATTCTCTCT-----ACAGAGAAC----------CTATTTTTCTATTGAATTCAGGATTCTAAACTCTTAACCACTGTTAGTCATCTGTATACATGAGCTTTCAAGGTTTCAGTGAGGTAAACTCAGC-ATCGTAACA-CAATTGAGTTTGTGACT--------GTCTTATGCCAAGTCTGACTCTATCCTGTGCTAGCAGTGCAGCTGG

a score=30813
s chr3           105894029 959 + 160039680 TTCCTTGGAGCCCCACCCAGCCAGCAGCTGCCCTCGCCTCC-TGCAGATGTTTCCAGTTTGCAGATTGCTTGGGGTTCTCTTTGGTCATTCGTTCCATTTGCTCAGAAACAACAGCCAGCATTCTTGTCGGGAAGTG-AGAGAGTGCCAACCTCAGGATGACACAAAAGGCCCCAGTCATGGGAACTAGATAGAGATGGGGTGGGGGCTGGAAAGGACCAGAGACTGGACCATCTGCAGTGACCTAGACTTCTGCTGGCCTCTGCTGCAGCCGGGGCCACCAAAACAACATCTATCTGGCTTCCATCTGGCAGGGCCCAGAGTGGGTCAGTTGAGTCATCCTGGAGGGTTCAGGTCAGAAAGAGCCATTCTCCTGGAGGCCCGGGAATGACTGGAGAGTCATTCTGGTTCCTTGGCCC-------------TTCACAG---------------------TCAGGATCTATTCCAAGGTTAATGAAAGGTTAGAAAGTGTTTGGTATTCAGGATCAAGTGCAGACACAAATGAATAGGCTGCGCATTAAATCGTAAATTGTGTGCCGTGCGTTTCATGTCTGTCAAGCAGCTGTTTTGGCAGGAGGTGACCA-----------------TAATATTCATCAACCTTCACACCCTGCCCAGAAGGTGGCCTTTTTATAGCCTTGAAAAGTGCCAAGTGCTCTGCCACGCCCTCCAGAATGAGTGACAGGTAAGACACAGAAACTGTGGTTATGGTTCTGAATAGGGCGGGCTCTTGAGATAGCC------AGGCTTCACCTGCAGCAACGGAGAGGCC---------CCTGTGGCTGCGGGTGCTCCATCCTGCCTGTCTAGGAACTGCCTGCAGTCAGACCCCCCAGGCTGGCCTCTGCCTGGGCTCACGAAG-----------GGGGGCGGTCTCATAGCTGAACCCTGGCACAAGCTTCTTCATGCGGTCAAGCCACTCACTTCCTGGCAAGTAGAGAAGATAGGAGAAGACGTCATCGCCGTCCTGCCATCGCCTT
s HiC_scaffold_1 116523244 981 - 233722169 TCCCCTGCTGACCCGCCCCACTGGGCATTACCCTTCCCTCCCTGCAGATGTTTCCAGTTTGAAGACTGCATGGAGTTCATGTTGGTCACTTGTTCCATTTGCTCAGaaacaacagccagcattattGGCAGGAAATGGAGATGGTGCCAACTCCAGGATAACACAAAAAGCCCTAGTCATGGGcactgggtgg-----gggtggggtttgGGAGGGA--ATAAGCTGGACTAT-TGCAGTGATCTAGAGTTCTGTTGTTCCC-GAAGAAGTCATGGTCACTGAAGCAGCGTCTGTTTCGATTTCCTTTGGTAATGACCA-AGCACGCCAGTTGAGTGATCCTGAAAGGA-CAATTCAGAGTGTGATACTGTCCCAGAGGCCTAGGAGTGATTGGAGAGCC----TGGCTCCGTGACTCAGTCTGAGTTAACCTCTCAACCTAGAGCAAGTTCTTTTTCTTCAGGAATGATTCCAAGGTTAAGGAGAAATTAGAAGATCTTTGGGATTTAGGATCAagagcaaatacaaataaacatagtGGGAATTATA---------GTGGGCC--------------TGGCATGCAGCTATTTTGGCAGGAGTTGGCTGCCGTGTTCTCCCTGTGCTATGATTTAGCTACCTTCATGCTCTGCACAGGAGGTAACCCCTTTATAGCCACGACTAGAGCTAAAAAATCTGCCAACTCCTCCAGAATGAGTTACACATCAGAAGCAGAAACTCTGATTATTGCTCTGAAT-GATCTGGCTCTTGATCCAGCCCACAGAGAGCTTCACTTGCTGATCTGAAGGGGCAGCACATAGGCCAGTGACTTAG-------TAGTCTGGTTGCCTGAAAACTA--TGGTGTCAGA--TATGAGACTGCCTTTCCTCTAGGCTCATGAAAGAATCAGGTGTGGGGGCTGTTGGAGAGCTCA--CCCAGCA-GGGCTT----ATGCTGCCAAGTCACTTGTTTCGTGGCAAGtatggagaagagagaaagatgtCACTGCCTTCCCACAATCCCTTT

a score=16534
s chr3           105899819 2301 + 160039680 ACTAGATTGGACTGACCATAGGCAGCCTAC--CTACCCTCCTTGCTCCTGGTCTCCCTT-------------------------GCAAAGTCCGAGGTGGTTGGCTGAGGCCAGT---------TTTGAGCCCTC---CCCATTTTCTCTCCTTAGCGGCAGCTTGTGTTTCAGAGGACGGTGGAAATGTGCTGCCACCTGGTGGCCACATCTGAGCATAGCCCCTTAGCCAGACCTCAACTACTCAAACCACAAGCTGACACAGGTAGTTGAAAGACATATTTTGAGAGCCTATAATCTGGAAGAGTATTAGGGATAGCTGAATCCTCTAGCCCTTCCTCATAACACGGCCCATTAGTAAAATTccctttaatacaatacaaatgttgaggcgacccctcccaaccataaatttattttcattgttacttcaaaactttaattttgctactgttataaatcatattgtTACTGTTATAAATCATAAGGTGTGTATCATATGTTTATTTATCATATGTATGTTTttataaatcatagggtatgtatcatatgtatgttttccggtggccttaggtgacccctgtgaaggtgtcatctgtggttagcgacccacaggccgagaactgctgCGCTAGACTTTCTCTTGGGCTTAGAGGCCTGGCTCACTTGG-----GCGTGGTTGAATCATGGTAGCTAAGGTTTGGGCACCTAGTCACAAGCAGTTCCCTTTCCCTGAGCAGGATTTCCTGTAACCCAAGTTACAGGAACCTTGG---GGT--TTTGGGTCTTTATCCATCCTTTTCATTTTTA-------CTGATACTCACTTTAGAGAACTCTTCACGTTCAGAGTCCC-AGGCCTTGTAAGT--------------TGAAAGGGTCTCAGCCC----------AGCTCTAAGAAGAGCAGTGAGTTTG--------------GGAAGTCACCTGAAG---TCTTAG------------GGTCTTACCGGTACTTTGACAGAGAGTGGGGAAGG--AGCATATAAAAAAGGGGGCAAGGAGAAGACACCCTCAAAGATGACTCTGAGCACTGGCTGTCTCTAAGGCCCCACTGTTCGCTGGCACATAGCGAGGTCTGTAGAAGCATGAGGCTTTGAGGGAAGTGGTCATGACTTCAAGAGGAAGTGAGTAGACATGGGTCTATGCAAGTATGCCCACAGCATCGTGTCAGCTCTGAGCAGCCAAGCAGCAGTTTCCATCTCCCAGCTGCCTAACATCCTGTCTTGGCTGTGGCTTGGGTAATTCTGGGTTCTGGA-ACCCCAACCTTGGTCTCCTGCTAA---TACACTTTTCTG---TCAAAGACTGGCAGTTGAGGTTATCTAGGCTTTTCTGAGAAGATGCAAAAGAGCCTATGTGTGTCCTCTCTCTGGTCAGCCTTTTCAGGATGCTA-TGCAGCCAATAGCTGAG---------CTGTGCTGTGCTGC------------------------TCCAGGCTAGAGCTTGGG-------AGGCCTTTTCCTGG-ACTCGGGTCACTTTGTCAGACTG--GAAACTCCTCAGAGTCCATCCTTGT---------------------------CTCCCTTGTA-----------------GAAATCAGGCTCTGCCGGTAGAAGTGAAATTCATGGTGCCCCTCCTCTCAGATGGAAAAAAAAATGGCAGGGAAATCCGAGCTTATC-----TTCAATTCACTATTAAAAACTTTCTTAAATAGACCTTTTTTTCTCCCCCACTCTGGTCCTATAAATGGTCTTCTGTGA--GATCCAAAATGTCAC----------------CAGTGGCCTGCTTATGTGGCCCTTTCTCTGGTCCTACCATCTCTTCCTACCTCAGAGCAGGCACTGAATCTGCTTCATACGTATGCTTTAGTGTCACAATCTTGTTGGCCTAAACATCACATTTTACAG----------TATTAATTTCTTCCTAATATTGATCACATAGTGACATCAAACAGAGGGGCTCCTTGTACTTGTGA-----CAGTACAAGTACATATCGTG-GTTCATCATTT--CTAAGGGCTACCTTTCAGAAACGgggctctgaagccagccatatgggtttgaatgtcag-tttgtcacttcctaactgtgctgtcatggccaatttatttaccctttggcgcctctgcttgcttatcATTAACAAGCATTGTCACTTTCTCCAGAAGACATTGGATGAGACCACAAATAATAAAATGTTATTTTGTTATAAAACTCCAGGACACCAGAGTGTCCTGGAGAGTACCTAACAGGTCCTAGTTGAGGGTTTCTGTAG-CTGTGTACCCAGTGCCAGGTTTCTGTCACCTGGCATGCTAAGAAGCATCTCTAGTCATTCACTGAGCAATAGTATACTG------CTGGC-CAGCCAGGCAACATG-------------GTGTAAAAATGAAAAGTTCTGGTTGGGTCTCCAGGAAC-TGCAGGCCTATAGAGTCTGGGTAGGAGGCTGTTAGGGTGGCATGGTGGA
s HiC_scaffold_1 116528741 2095 - 233722169 ACAGGATTGGACTGAATTTAGGCAGTTGGCTTCTACCCTTGTCTTCTTTGTTCTCCCTTAGTTCTCCACATGTTTTAACCGTCTGCACCATCTAAGGTCTCTGGCTA--GTCAGTGTTCCAAAATTCAAGTTctcttaccttttattttctatttcaggcAGCCTGGACCCCAAGAGGCAGTAGAAACGTGCTGCCATCTGGTGGCCACTGCTAAGCATAATGCCTTACC-------------------------ACCGACACA--------------------------------------------------------TAAGCCTTTCAGGCTT----------------------------------------------GAAGCTGATGCTACTC--TCCAAC---------ATTTAGCTAGTTGC-CCAGAACCTGAA------CAACGTTAGAA------------------------------------------------------------------------------------------------------------------TTGACT-----------------------------------------GAACTGT--CTCTAGGCCTCCACTTGGTCTT-GGTTCCTCTGACACTcggtgtgtgtgtgggtga-----ggTGGATAGGTGCCAGGCACCTGG-----AGCAGTTTCCCTTCCTTGGGCAAGACTT-AGGTAACTCATGGTGAAAGAAGCTTGACCTGGTCACCCAGGCCTT-----GCCCTTGCCACCTCTAGCCgcaccccacctccaccccag-----ctTTCATGTACTCATACTTGAGGCCTTGTGAGTCACAACAgaagtggcacaagtgtctgggCCCCGGAAAAGAAAGCCCTGGGGA---CACTGGTTCTGAATCAGCACTTGGAGGAAGCTGTCTGGAGGGCCTTTAACCTCGTCTGTCTGGcctgacagaggcagagacaggaagttGATAAGGCCAGCAT------------GCAAGAGCCAGGCTTCTTCAGGAGTGATTCTGAACTCTGGTCTTTTCTAAGCCTCTACGGTTAACTAACAAGCACAAAGTTCTTTAAAACTATAACGGTTTG-GGGAAGTGGGGATGGGATCAAGAGGAAGTGAGCAAAC-TGATTTTGTGTGAGTCTG----CGGCAGAGAGTGAGCCCTT--------GGCAGTAGCTATCATCTCCTGCCCGCCTG-----------------------GGCCAATTCTGGGCTCCAGAGGTCCTTTCCCTGGGCTCCTGCTAATGCTGCACCTGGCTGTTATTAAAGACTTGTCTCTGAAGTTTTCTAACTTTTTCAGAGAAGTTACAAAATATCCGA--TGAATTGTCTCTCTGACTAGCC-TCTCAGGATGTTAGCCCAACAGAAAGGGGAAGGACGCTGTCTGTGGTTGGCTGCCCAGTTTCATCAGGCCCAAGGAGTTCTAGGCCAGGGATCAGGACAGGCAAGGCCTGACCTCAGTGTCCAAGTCACTCT-TCAGGCTGATGAGACCTCTCAGA-TCTTTCCCTCTTAAGGGTGATCTCAGCACCAGACCTCACTTTCTTTCACCTGGGTTTGCTAGGGTGAGCTCAGGTTCTTTTAGTAGAACTGAAAACAGCCATGACTTTCCTTTGAAATGGGAAAA------GCTCATGAACcacatttcatttataatttatttcactatttaaaattttatt-----------------tccataaattTGGTtccataaatgttttttttttactggccCAGAGCTCCCCTGGAAACCCAGCCCCACAGCAGCCTGCTCATGAAATTTTCATTCTG------CTGTCTCTTTCTAACTCTGAGCAG---------CTAGTTGATACATACTGTTTGCTCTTATAATCTGGT---------CATATTCTTTTCCAGGGCCAGAGAATATTGATCCCCTATTGATATTGGTAATATGAC-ATATCAAACTCAGGGACCCCTTGTCCTTGTGAAAACTTAGTGTGGCTGT---TCGTGTGTTCATCCTCTTATTGAAGGCTGTTGTTTAGAAGC------CTGAAGCCAGGAGCCTGAGTTTGAATGCCAACTCTGTCAAtgtctagctgtgtgaccttggataaGTTATTTACCTCTTCA-ATCTCAGCTTTCTCAGC-------AACAATATCTTTTTAATcttagaatattgaataaaa----aatgaataaaagg-------------aatTAACACAGTATCTGA-TATCATGAAGTGGACTTAACGAGTTGTAGTTGA--TTTATTGTTGTCTTTATATGTGGTGCTGATTTTATGCTTCCTGACA--CAGAGATGCTTtcctattcattcatttatgaaaaGTGTACGGAGGCCCCTGTCTCTGCCAGGCATTGTGATAGGGATTATAAATGTAGAAATGAAATGATGGTCTCTGCTCCCCGGGAACTTGCAGGCCAACAAGG-------GGGAGGTCATATAATCAGCACGATGGA

a score=92502
s chr3           105904293 4140 + 160039680 [encoded data, 4424 characters]
s HiC_scaffold_1 116534245 3799 - 233722169 [encoded data, 4424 characters]

a score=16184
s chr3           105904556 567 + 160039680 TCCTCCAGGTTAATGGGAAGGCAGGGATAAGCGGC------------TGAGGTTGATGGTCCTGTAACAGGCCCTTTCTGAGAAGAGTCTCTAAGAGAGAGTCATACCG-------GAAGGAATGAGCAAGTTGTGAGTTCTCTGGACTGTTGTGACATTCTAACTTCTGGGCAGAAGTCTGACAAGAGCTGGGTCCACTGGCCCATACACAACCTGCTGAAGAGCCACGGAAGCTTCCGCCTGAAGCTTTTCTGAGACAGCATGGAAGCCGACA-ACACCACGGAGACGGACTGGCTGAACATCACCTACATCACCATGGAGGCTGCCATCGGGCTCTGTGCCGTTGTGGGCAACATGCTGGTCATCTGGGTGGTCAAGCTGAACCCCACTCTGAGGACCAC------CACGTTCTATTTCATTGTCTCCCTAGCACTGGCTGACATTGCCGTTGGGGTGCTGGTCACACCTTTGGCCATTGCTGTCAGCCTGCAAGTCAAGATGCACTTCTATGCCTGCCTTTTCATGTCCTGTGTGCTGCTGATCTTCACCCATGCTTCCATCATGTCCTTGCTGGCCATTGCTGTAGAC
s HiC_scaffold_1 116576115 528 - 233722169 TCCTCCAGGTTTCTGGGTAC-CAGGGATGAGTGGCCCACAAACAGGCTAGAAATGACTTCTCTGGGAGAGGCCCTTTC-AAGAAGGGTCTACAATAGACTGTCCCAgcaaaaaagtgaagaaatgagTGAGTTGT------TTCACACCAT-----------------------GAGGTTTGGCAAGAGCTAGGCCCAAAGGCCCCTACAAATCCTGCTG----GCTAACGTGTTATCTG--GGAGGCTCCTCTGGGATAGCATGACACTCCACATACTCTATTG--------TGGGTTCAAATCACCTGG-----CGTGGAAGATTTCACTGGGCTCTTTGTTGTAGTGAGCAATGTGTTGATTATTTGGATGATCAAACTGAATTGCACTCTGGAGACCACACATCACATTCTCTATTTCATTGTCTCCCTGGCCCTGGTTGATACTGCAGTTGGGCTGCTGGTTATACCTTTGCCCACCGTCTTCAGCCTGAACATCTCAATATACTTCTACAACTGCCTTTT-------TATGTGCTGCTCATTTTGACC------TCTATTATGTCCT--CTGGCCACTGCtgtgagc

a score=11748
s chr3           105910444 869 + 160039680 AAGCAAAGAGAAGCGGGAACCTGAAAGTGGA--ATTAGCTATTCCTG-ACGTTCGTCTAAAGCCTTGTCCTTGTCCTGAGCTCGGTCACCTAATTCCTCTTGTCA-----TCATTTCAGCAGTGGTCCCTTCTTTCTCATTCT-TCACTCCAGA--AGAATCAAGAGCTCGGGGCTTCCCCTTACTGAGTCTCTGATTT-AGTTTGAGAGCA---GCTCCAGGAAGAGGCCCTGGGCTTGCTCCGGGGTGTCACAACCTCTGCTCAGTTGGCTGGACGGTGAGGGGGAAGTGCTGTAGAGTCTTGGTTTCCTGGTACTCTTCACACTGCACCTCTTGACTTTTAATTTCAAGCTCCATTATTGTGACATCGCTCA--GTCTCCCCTTTGTGAGGAGGCTTG---ATTCAAAGTAATCACTTGACTCCAGTGGGAAGGACCATCACGGCCGGGCTTGCTGGTATCGTTAGAC---CCATGCCTATGAGGTTCTGAGAAGGACTTTGACTTTCTT--------TTTTGTTTTCTTTGTCCCTCTGACTACCACTGGTGGCTCGCTGGGACCTGGGTG---GTTTCATTCTTGCCAAGAGAGAATAAAGAGCTATGCCAGCTCGGAAGAAGCCAAAACCTGGGGCCCAGAAGAAGCTGAAGCCTGGCGTGTGAAAAATACTCATTTAGCATAGAGTATTTAGCAAAGGCAAACCAAAAATTT------------CTGGCTACAACTGAGTAGCTCCACTCTGGTTTCAGGTTTAGAGATCAGTGTGCCAGGGGTCTTCCCATGAGGCTTGCCTCTGGCCAGCAAGTTTTCATCCTA-----AAAGGAAAACTGGGGAGTTTTCTCTAAAGAGAAAAGGTACAGAGAC-ACACAGACAAATATAGGGGTGGGTTTCCTCTCTTTC
s HiC_scaffold_1 116539114 826 - 233722169 aagaaaacaaaagcaaaaatccaGGAATTAATTCTTTGCTGTTCCTACAAGTTTGTTCTAAACCTAGTCCTAACCCAGGGGCTGATAATCAAATTTATGTCATTAACATTTCATTTCAGCAAGCggtccttctttctccttttgtcaGCCCAGACAAAAATCAGGAAGTTGAACCCCCGCCTtccttactttttgtttttagcGTGCAAACATATACCCCAGTAAGAGGTCCTGGGTTTGTGCTAGGG-----------------------------------------------------CTCAGTTTCCTAGTAATCTGTGCACCATGCCTCTTAATTTACAATATCTAACCCAGTTGCTATAGTAACACTTAATGCCTatccttttttattaaatttggaaACTTAAAATGACCACTTCTGGCAAGGCAGAATGACCATC---------CTT--TGGTGTCATTAGTCAAGCTGTAACTCTTGGGTTTCACAACTGCTTTTAATTCCCCCACCccaactttctcttcctttttttctctgattGTTGCTGATGGCTTTCAGGGagctgcatttttgttttgtgtctgtcAAATTGGAAT------------CTGCTGAGATGATATTTCATC----AGCCCAGAAGTGACCTTAGA-------GTAAAATCATCTTCTTTA----AGTGAACTCAAAAAAGATGAACCAAAAGTCATCAGTGAGGAGACTGACTTAAAGTTAGGA---CCATCATGGTTTCAGGGTTAGAGATTAGTGTCACAGGAATCTCCCTATGAACCCCTCTTCTGGCTAGTTCCCTCTTAGCCAAATGCTAAAGGGATAGCGGCGCCCTTTATTCTAAGGGACTAGGTAAAAAGACTACCCAGCTAAA-ACTGAAGTTTGCTTCCTTAGTTTC

a score=24204
s chr3           105916634 505 + 160039680 TTATCT-TCTAGGGCCCAGGAGAGATTTGGTATGTTTTCAAGAATAATGAACACtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTATTTGTTCACAGATGCCATGGTCATGGATGAAAAGGT----GAAATCAGGTGTTGAGCTGGAGACAGCTTCTGCAGTCTGTGTCTATGATGCCTACTACAAGGACCACACCAAGTACTGGTGCCGTGGCTACTTCAGGGACTCGTGCAACATTATTGCCTTCACCCCTAATAGCACCAACCGTGTGGCCCTGAAGGATACAGGAAACCAACTCATTATCACTATATCCTGCCTGGTCAAGGAGGACACAGGCTGGTACTGGTGTGGTATCCAGCGGGACTTGGCC-AGAGATGACATGGATTTTACACAGCTGATTGTGACTGACAATAGAGAAGACCGGGCCAATGGCTTTTCATCT------GGTAAAGAGACTGGCAAGGGATCTTTGA--------AGGGTAATGGGTGT
s HiC_scaffold_1 116545665 510 - 233722169 TTATCCATCAAGAGTATAGGAATAGTTTGTT-TGATTGAAAgaataat------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgagcatGTGCGTGTTTTTACAGATGCCATGGTCATGGAAAAAAGGGTCAAGGAAATC-----TTGTGTTGGACACAGCTTCTGCCATCTGCAACTACGATGTTCACTGTAAGGGTCCCTGCAAGCATTGGTGCCTGGGCTATTTTCGGAACTTCTACAGTGTCATGGCCTTCTCTCCCAA---CACTGACCATGTCATCTTGAAGGACACAGAAAACCAATTCATTGTCACTGTACCCTGCCTGGCCAAGGAGGATTCAGGCTGGTACTGGTGTGGCATCCAGCGGAACTTTGCCAAGGGATGACATGGATTTTACAGAGTTGATTGTTATTGACCACAGAGAAGTCCTACCCAATAGTGTTTGGCCTGAGATAGGTAAAGAGGTTGCCAGGGATTCATCTAACTAACCTAGGATAGTGGGCGT

a score=11331
s chr3           105919636 447 + 160039680 TTTcttctctttctctttctctccccctccctcttcctttcccactttcctttctttttgccatagcaggtgacacctatgtatagttccccaatttacttctcccccattcataggaatggctga--agtctgtggttttccacttcttgtcccgatttaacctctggggaaggactcactggcccagcttggtcaaatgcccatcagatccaaagaacagg-gtcactcttccagaatgtagttgtcaggagctaccggggctgggctgggact--------------------------ggtgtgagaagAAAACCAAAAGGT------------CTCCTTCCAAGGGACCTGATATCTGATGTGGTTTCTTCTAGAATGTCCATTCTGATCATTTGTATACTGATTACCAGTTTGGGGATCATCTTTATAATCAGTCACTTGTCCAGAGGAAGGCGAAGCCAAAGAAATAGAGAAGGTAAATAG
s HiC_scaffold_1 116550246 468 - 233722169 tctccctccctcctttttcacttcctcttcctcctccttctcccccacccTCTCTTC--------AAAGGAAGAATCCATTCATGATTCTGAAGTATATTTGTCCCCTGTTCAAAGGC-TGGCCAGTCAGCCTGTGCCTT----CTTCCTATTCC----CACCCTCCTAAGAGG--CTGGCTGACTCAGCTTGGTCAGATGTCCACCAAATGCAGAGGGTAGGTGTCATTGTAAAAGAGTACAGTGGCCAGGAACTACTGTAACCTGCTCAGGAGTAATAGCGTGCAGATCTCAGTGCAGAAGATTGGAGTATAGGATCGAAAGGCACCCACAGTCAGTTCTTTTCAAGGAACATGACATCAGTTGTACTTCCTTCCAGGATGACCATTCCGATCTTTCTCATGCTGAAGGCTAGTTTGAAGGTCAT-GTTGTAATCATTCATTCttccagagaaaaaaagaagacaaggaaTAGAAGGGGTAAGTAG

a score=21936
s chr3           105921493 1976 + 160039680 TTTTACATGAATGAATGTGACCCTCCTCTAATTGCCTAGTCACATAGATACCAAG--GCAGCTAG--------------TCAGCCCACTAGGCTGAGGAGGATGTATAATGAGAGGTGGTGGAAGAAGCAAGGTAGTCTT---AAGTGGAG-TAGATGCAGACAGCGAAGAAGGAAGACAGAAATTAACTGTAT-GTAGGTTCCATATCTGCAGGGCTACCTGCCTCCCAGCACACAAGCTTTGGACAGTAGCCTGATATCCTTACTGCCTGTCTGAAAGATTGTATTCACCTGTAGGG--ATACAGACAAGGCTT-TGTCAAATGATGGAGCTACTATAACCACCACCAACCGAGCCAGAATGTATGGCTTTTGCCAAGGGGTCTGTGT-GGGACATGTGGGCCCAGGATCTCATTCCTTAGCTTTGTGTCTCTGTTTTCTCTTGGATAGTTACTGGCAAAAGCATCAGTAGAAACCCACAAGCAAGCCAAGGCCCGTCTATGGTCTCCATAACTTTGGTAAGTTCCATC------CTTATTTCCTGCATCCTCAGCCCCAGCAGAACCCTGTCTTTTGCTCTACCCTTTGACAGAGAGA-------------GGACTGTGACT-GTATGTCTTTGTCT--------------GGGACAC--AGGCAAGTCCTACCATCTGGAAAGTTCTCTAGGTCACCACCATGTGGAAAGTTCACCATTTGGCTAAGCTCTGGAGCATTTGCAGAAGTGAAAGAATACC----ACGAGCACCTCTGTTTAGCCAAGGCAGTGCTGTTTGCTTTTGTCTCTTTATGATCA-GAACCCAAGCAAACACCTTGGACAATGAAGAGGCTATAGGTATAATTAAAAAATGGAGTCTAGTCACT-CTGGGTTTGGAAACATAGAAAAACATTTCAGAAAAATAATGATTGAGATAAAACAAACAAACACCTTAAAACAGAAACCCACCATCATCACCAAATCCCAGTAGCATCCTAATGACGAAAGATCTATTAATGACACACACAACGGGCCAGTGCCTGGAGGAGCCGAGCTGTGAAACTAAGGCTACAAGGTCTCA-GTCTGCTCCTGTGAGATCTAGGTCTCGTGCAGACGTAGAGCAAGCTCTATAAGAAGGTAAGGGAAAGGCTCCCACAGTGACCTTGCCTTTTTGCCATCTAGAAGCTTTGGGATCAGTGGAGGTGAGGGT-ATGCAGAAAGCA-------TGTCTGGTTC---------TATCCCCTGTAGGATACAATTGTAGTTTGTATTTCTTTCAGAAACTTATCACTGATTCTTT---AAGATATGACCCTGGGCAACATTTCTCTTTTCC-----AAGCTAGTTTTTCTCTCTACGTTAAAAACTGTTCTTATACTCTTCTGAGTTTTCTATCCATCCATCCACTCATGACCCACCAGCCCCACTCATGCACCCTTCATTTTGCAAActaggaacatgctagttgccgaggttacaaagacaaacaaaatagattagcatctgtcttcatggagtgtatgatgtaaaagaggaaaacagCTGAGTGGCTGTGgtactcccagaagcccaggcagaagcatctcaagtctgaggccagcttggactacacagtgagttctaggcttgcttagactacagagtgagactctgtctcaTACATAAGCAAGAAGGTGTTGTGGTGGGGTGGAGGAGTACAAGCAACCAGACATAAGCACACATGTAAGCTTGTCAGCTAGAATAAGCGAAG--GAGGCGTGATGCTATAAATGATAGGCCAATAGAATCCAGTGCTGTTCTCTTT-AGCAAGGAACCAGCAACCTGTTTTAGCCATGGCCTGTTCCCTCATCCTTGGGCA-----AACTTAGGAGCCTGAACCAAAGTCCCTTCTAGTTTTGTTATTCTTGGCCCCTGAAGTCCAGATACATTTA-TACCATCAAAATTCAGTGAGAGGGGAGCAAGCCCTAGGTATCAATCAAGCTTTCCTACAGCTGCCTGAGAAGTCTCACAGGGATGACATCACACTCCAGCCCTGAAAACAAACATTGGTGGTT
s HiC_scaffold_1 116550772 1669 - 233722169 tttcatataaataaatgtgacCCTCTT---ATTGCACGGCCATGTGGAGACCATGTGGCTGCCAGCCCATGGCCAGAAATCATACTACTTCATTGTGTCAAACGCACCATGAGAGAGAACAGACAGAGCACTGTCGCCTTCTGAAGTAGAGGTGTGTGCTGACGG-AAGGAGGGGAGCCTAAAGCCAACCACATTACTGGTTCCACTTCTGGAGG-CTCCCTTGCTTGCTCCACACAACCTTAAGGCAGT-----------TTTATTCCCTG-ATGGAAACTTTTACTTAC-TGTGAGGTCCTAGGGCCAAGGCTCCTGTTCA------GAGCTTTGAGGA------------GGTTCAGAGTGGGAGAGGTT--CCAAAGGATCTCAGTCTTAatattaaaggaaagaaagagacccTTCAGCTTTGTGCCTCCCT----------ATAGT-------AAATGCCTGGTGAGAAGACTTTAAACTATCCAAAACTTTTCTGTGATTCTCATACCCTTGGTAATTCCCTCCATGACACTTCTGTTCTGTGTTCTGTACCTCACAGAAACTTAATCTTTAGGTCTCCCATTTCCTATGAAGACAAGCCACTGCGTGACTTGTGACTTGTATACCTTTCTCTTTGAGGGAGTATCCAAGACATGAAGGACAATCTTAACATGTGGAAAATCCTCTGTG---CCACCATGTGG--------CAATTCTGCTGAGCTCTGAACTATACACAGA-GCACAACAACATCCTATGCAAGGGACACTGTTTAGCCaa-----------tagcttttgttttgttttgtttgtgaaaCTAAAGAAACATGTTAGGCAGTAAAGAGACTGTAGGCATAATTACAAAACAGACTCCAGTCTCTTCTGAGTGTAGAAACATCGATTAACAA--------------AATTGAGA----------------------------------------------------------------------AATACCTATCAGTGAAACACAAA---GGTCTGCAGCTAGA--AGTTAAAATGCAAAACTGAGGCTTTGAGCTCTCATGTTTGC-CCTGTAAAATTTTAGACCTGTA-----GCAAATTAGGACCCTTAAGAA---AAAGTAGAAGCTCCCA---TGGCCTTGC----TGGTCCTCTAGGATGTTTGGAAACTGTGCAAATGGGGATTGTGGTTAAAGCAATACCTTTCTCAGATTCATCAGAGAACACACTCTCTGGAACACAATTAAGATTA--ATTTTTTCCAAAAAC----CACTGTTACTTTTTAAAGGCATGGCCCTACCCAGGGTTTTACTTTTACCCAgggagttgctttttttttttcctacaaa------------------ttgAAGACTCCATT--TCCAT---------AGTCCCTAGGATCATTCAttc--cattcattcaacaaattagAACCATACTAGATTCTGGGAATACAAAGACAAGCAACACAAAT-AGCATCTATCTTCATGGAGCTTGTGATGTAAAATAGGA-------------------------------------------------------------------------------------------------------------------------------------------------------TGAAG----ACAAGCTACCATATATGAGCACAAATGTGAAATTGTCAG----AGCAAGTAAAGAAGAGACACGGTGTTGCAA-----------------TCAAACACTGTTCTTTTTTGGTGAGGAGTATACAACCCATTTCAGCCAAGGCCTGCGTCC----CCGCGAGCAGTTGAAACATGGCAGCCTGAACCAAGTTTCCTTCTAGACTTGACATTCTTGGTTTCTGAAGCCCAGTGAATTGTAGTCATATCCAAATTT-GAGAGATAAATGCAAGCCCAATGT----ACTAGGCTTTTCTA---TTGACTTATGAGTTTTGCAGTAATGATATATGATTTTAGCCCTTAAAACACACCTTGATGTTT

a score=37900
s chr3           105925791 3016 + 160039680 TTCTTGCTTGATACTTACAT------TTCAGAGTAAGATTGCTTAATTAAAAAGAATCTTGCTGATTTTTTCA-TGGGGTAGTCTATATGATTGTCCATT--TGTTTTGGG-GAATAAAATGAACATGTTTAATCTCTACTTTTGGCTCTCAACCAAGTT-GTCACACATATCTCTAATGCCATACAAAGGAGATAGAAACCCACATTTTAGTAGTGTTTTATACCATACAGACTTTGTGTTGGCTTAGAATTCTGGTCTTGATTTCTGGA--------------------------GAAGATGAAGGGACCAACCTTGGAGGAGGGTCTGCCATTATTTGAAAATCTTCA---ACTGTTC-----ATTGGCCCCTCCCTGGTTATCATCACTG-TGTT----------TCTT-TGTCTTGAGCTCTACCCC-CACCCTTTGGAAAGGTTTAGGGGCATCATCACTCAAGGGGCTGCCACCTTCAGTTGGAGTGACAGCACCAGCCACCTTTCCTCTAGTGGTGAATGTCATTAACCACTGGTCCTTATGACTGATGACAATTAA--GTTAGATCAAGCCTAAACC--ACCCCAACTACAGCTTTACATAGAGTGTGGTCCCAGGTTTGTGGAAAACAACAAAATCAAACATATGAATAAATCCAGAAAGCAACATGTCGAAGGAGCTGAGCTGAGGTCTGCATTCTGCCTCATGGGAGAGGCAGATCTGAGTCTGTCACTTTAATCTGGGAATAGATAGTGGGCTCCAAGCCTGAGGAGTGGTTTCTAGTCAAGTCATTGCTGTTTTCTTCTGGGGGCTTGAAAGTCATGCTGGCATACGTGAGTGACTCCTTTGATAAAGACGACAGCTTTTGGGGAGAAAGAGGAGAAGCAAG-----------------TGAAGCAAAAGGTGTCTCTTTAAAAGTGATCCAGAAACTTTGAAAAGTGTGGACCCAAAGAGA---GCAGAAAAACTCACAAAAGAACTACTTGCCCAGAGTCCAGAAAGTGATGCCAATAGTCCCGTCCACAGTGCAGGATAGAGAGGAGACAGAATAAACCAACTCCCCCTAAATAATTTGGTGTACCACCTTCACCACACGCAATCTCCCTCTTGCACCCCTAAAACAACACA-TGGTCTTACTTTGGTGGGAGGCTCTGAGGGAGGGTCCTGGGTCTGGGCACTGGAGTGACCTGCAGCAAA---CAAGGAGGAAGAGAGTTGTCCTTTCACTAGGGGGTC-TGGATGAGTGG-GAGCCTCTCACTT------TAGGT---GGTTAGTGGGTAGGGGTACTGGTGTGTGAAGAGCAGCAAGGAGGAGCAGGGAAGGGCCTCTGAGGTGGCTCTGCAAAGAGAGTGGGCCGAGCT---------CCCTCCCTCCT----CTTCCCCAGCACTCACATCGCTCTTAGTGACAGTAGA--------------------AGAGACCACTCACATTTTCTGCAGCTCTTGACAATGAGGAAGATAAGGGCCACAATGAGCAGTGTCAGCAGAACCCCAGCAAAAAAGGCCAAGATGATGTGTTCCTTTCTGTTTTAGCAGAAACAAAAGGGAGTAGATGACCTGCTAGCAGACAGGCCCCTTGAAGCCTTTCCGGAAAGCCAGGCTTAACTTTCTTTTTTTTGTTTTGTTTCTTTTTTtttggtttttttgagacagggtttccctgtatagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgttgggattaaaggcgtgcgccaccacgcccggctCAGGCTTAACTTTCTTATGTGGGCTCTTACGTGGGCTGGAGGACTT--GCTCCCGCCCACTGCTGGAGAAGAGACAATTTTGCTTTTGGGGTCCGCAGTCACAAGACTTTCTCCCAATCCCTCCCTCAACACTCCACATCCCAGCATTGTGTGAAGTGTGTAGTGGGGCTCTCTTAAATCTTgggcaacgttgagttcatactgcttgtaaccca----------gcacttgggaagctgagactggaagattgtggcagtttagaggccagcctgggccacgttgtgagacATGCTCAGTTCCCCTCCCCTGCCCTGCCAACAGAACTATACTCCTAAGGTCAAACACTG----AGTTCTTCCACCGTTCCTGACCTCCTCTCCCACTCATTTTGCCCTTCCCAAGGCCCTGAGACAAAATGGTCAA--TAAAAACCAATG------GACTGGAAATGCCACAAGGACCGGATAAATGTGTTCCTTTACTTGGGGTTGAAGAAATAGGGTGTAGAGCTGGTCACTGGGGCTGTCGTGGAGAATGTGCCT-GCAGAGAACATGGAAGGTATCAGTTTCAGGGGGATCAGTATCTCTGCC-CTACTCCTGCCATCCCTCTAGGATAAGACCCCAAGCACTACCCATGGGAGCTTTCAAGTTGGCTACAGCTCTGCAGAGGGGAGAACAATGAGtcttt--tttgccgatgaccccaggactttttgcatgccaggt---gaagccctctaccactgagctacatgccACCATCTGAGTGAGAACTTTAAAATGAGAAGTAGAGC---TGTCCTTGAAATGGTTTACAAAGTAAAGGGGCAGAGGTATAGTGGGAAGCCCTGGGGAGATGTGG---TTCTGAGTTTAGCTGGTACTTCCCTAGTTTCTTGTGACCGCCAGAGTGTatgagtgtg--------tgtgtgtgtg--------------tgtgtgtgtgtgcgcacacacacacgtgtgtgtgtgtgtgtgtgtgtgttttctagtgtctaacccacagggAGAGAAGCAAGAAGAAACATGAAGTATATTTTCATAAACTA-CCAGCTGATCTACTC-AGTTTGGAGGACAGGTCAGGTCTTTCT--GATTCCTTTTGCCTCCTCCTTGGTGGGCACTGGCTTCTGCAGTGTAGTGCACTTGAATTCTTCTAGCTCAGCCACACTCTGG-CCAGCACTACTTCCCGGGGAG-CTTTGAACACAACTCCTCCTTTTACTAATTCACCGTAAGCACCCAGGGA-------AATGATGTCTGTCCCGAACTCACAGATTGTGGATTTAGGTGTGGAGGAAGTAGATCCCATGCTGTCTTCTCCTGAGAATAAAACAGGTACGTTTTAG
s HiC_scaffold_1 116554721 2689 - 233722169 tttttatttattatttacataaGAACTTTATACTAAGCTTGCTTAGTGAAAAGTATTCCTATTGACATTTTAAATGGGGCTGTCTGTATGATTATCCATTGATATTTTGGGTGAATAAA-------TGTTTAGATT--AATCTTAGTACTCATGTAAGTTTGCTGTGCATATCTCTTGTACTACAGGGAGGAGATAGAAACCCTTATTTGAATAGTGCTGtataaaatgtgaatttcataTTTGCATAAATGTCTGGTCCTGACTTCCGGAAAAAGTGTCAGAGATAGACGAGTAATGAAGAAGAAGGAATCAACATTTGTGGggagtttttctttatttaaaattctcaatAGATTGTTCTTCTGGTGGACTCTTCCCTAGTGG--ACCAGTGATGCTGGGGAGTAAGTCTTGTACATGGagctctgtcttgcacactttgGAAGGACACAAGGA----AGCCCTCAAGGGTTATCAACTGTCAGTTCACATGGGAGGGTGAGCAGTCTT--CTCCAGCTGGGGTGACGAATGAGCACTCATTTTCAAAACTGCTGGGAATATGTTGTCAGATCACACATCAACCCAACTCTGATCATAATTTCACATAGGCTGTAGTcacaaatttgtaaaaaaaaatgacac-----------atagATGCGATAAATGGCCT----------CAGACCTGA---CTGCGT-------------------------AAGTTTATCACTTTA-TCTGAGCATATACAACAGGATCTGTGTGTACAGAATGGTTTGTAGATAAGCGATtgctgttttcttctgagggtttGAAAGTCATGCTGGCATAGACAAGTGACTCCTTTGGTATGGATGAATGCttcagagg-gagagaaaagaagaatgaaagaatgaattcaaTTTGAAGCCAAAAGTGTCTCT--AGAAGCAACCTGAAAGCTTTGGTAAGAG-GGACCCAAAGAGACTTGGAgaaatctttataaaa----tatttgcccAGAA---AGAAATT------ATTATTCCAGTCAGTAATGCAGAATACAGAGGGAA--------------------------------------ACCCCTATCAGA----GTGGCTCTCCAGGACCT-TCAAACAACATGGTGGTCTTACCCTGGCAGGAAGATCTGAGTGAGGATCCAGGCGTTGGGGACTGGAATGACCTGAAACAAGTGCCAGAGAGGAGAAGGATAAGTCT--CACCAATGGGTCCTGGAAGAGAAAAGAGCCTTTCCCTTCCATCTTGGGTTGGAGTTGGGAGGTGGTGGGATGGGGGTGGGAGG--CAGGGAgtaaaagaaggggaaagattTGGATTCTAGTGCACAGAGCGCATGAGCCAAGCTGGGTTTTTTCCCCTCCTCCTGTTACTTCCTCCCGGCTATCTCTGACCTCAGTGGCAGAGAAGGAAGGCTGTTTCATTCCTCAGAAATCACTTACGTTTTCTATAGCACTTTATGATGAAGAAGATAAGGGCTGTCAGCAGCAATGTCAGTAAAACCCCAGCAAAAAAAGCCAAGATCAAGTGGTCCTTGCTGTTTGGGCAGA---AAGATGGAGCAGATGAGCTGTTGG------GACTTTTGTTAACCTTTCCTAGAAGCCAAATGTAATC------------------------------------------------TTTCCC-----AGCTGTGG-------------------GTAAGCCA----------------------------------------------TTGAGAT------------------------------------------------AGTGCTCGTATTGGTTACTGGACTTACACTCCCACCCACTGGTTGCCAACTG-----TTCGCTTTTGAGTTCTAGATCCATTTGAA---------------CCCTGAA--------------------TGGAAGTTGTGta------ctctctc-----------------------------cctgtctcccacCCCCCACATGCATTTTAGAAGCTTAAA---GGAATTCATAGATGTCCTGAAGCTTG---GGGCTA------------------------------------------AGAACTACACTCCTAAGAGCAAACACTGGTTTAATTCTTCCACTGTTTCTGGCCCCTTCTCTA---CAGAGttccttccccaa-------agtcaaagctGTCAACGTGAGATCCAATGCCACGTGGCCCAGAATG----AAAGAGATGGTGAA--TACTCATTTACTTGAGGT-----------GGCTT----CTGGTCACTGGGGCTGCCATAGAG---GCATCTAGAAAAGAACATGGAA---------------GGGATCAGTGAATCTGCTACTTCTCACGCTGCCCTTCTAGCAAAAGGCCCTGTGCCTTCCCCACCCAAG----CAAATAGGCTGCAACTCTACATGGTGAGATACGGGGGTTCTTTAATATGATGATG--TACTGGATCTAAAGACAGTCAGCTATAGAAATCAAACATCCTTGTGTTCCACAGCTCTATGTGTCT-----CTTTGATAAAGAAAACACTGCATGTGTCTCC-------TTCTCAAA------------AATTCTAGCACAAAGCTCT-GGGAGATGTGTTCCTTCTGACCTATG--GGGACTCTCCAAGTC-----AGGAAGTCAGAA-GCCTCAGTGAGGCCAGCACTTTGACCTTGGAAACTccctttactttttgtttgtctgCAGAGTAGCTATTGAAAGCAGCCATG---GTGCTTTCGCTAATACCTATAGTGCTGAAAGGGGAGCAGGAAGGGAAGCAAACTAGATTTTCCTAAACTGCCCAGATGGTTTACTCAAATTTGGAGGGCGAGGCagttcttttttggtttcctttttattctt-----gtgGCCTCAGG---CTGCATCATGGCAAAATCTGATTCTTCCACTTTGGAGATGCATTGGCCCGGTGCCATTCCCTTTACAGTCCTTCggcccaatttatttttcttccagttcaTTTTAACTTAGCAAGGAGGCAGGTAACAGTTCCCATTCGGAACTCACCAGTGGTGGGTCGACATGTGGAGGAAGCTTTTCCCATGTTATATTCCCCTAAGAACAAAA-AGGTTCCTTTTAG

a score=10623
s chr3           105932325 422 + 160039680 AACAATAATCCAAGCATTTGTCAGAAGCAGAAAGTTGAGCCAAGAACAATGCTCTTTGCAGTTTGATCTGGCATGAGAGACTCACACTCCATACGGTGAGGCCTGTGCAAC-----ACAGCCGTTCCAA----TGTAACCCTTCCCCCACC-----CAAAGAACAACATCA---GAAGCCAGCACTAAACAGATAATTAAAATGTCCTCTGATGGGCAATTATTTAGTCTGGATTAGAAGG-----------GTCTTTACCTTTCCAGAAAGACTCCAGTCATACGATGCAGCTGT--GAGACTGAGCGTTTGACTTTTCTGTTCCTAGTCTTGGTTTTCAGAAATGATGAAACAAAGTTTACTCCCACTGTCACTGTCACCCTCAGGC--TGTGTCGCAAAGATA-TGTTTAAGCTCCAAGGCACAGACTTCCTCTTTGAGGCCAATGGTATTT
s HiC_scaffold_1 116560118 434 - 233722169 AACAGCAATCCAAATGTTTGACAGagctaaaatttagaaaagaaaacactacTATATATAGTTTTAGCTGACAACGGACAGTATAAATCATTGCCATAAAATCCAT-CAACTGAAAGCAGCTGTtcaaacaattcttccccttcccccatcaaatacaaagaagaaaatgatacaaagctAGC----------TGATTTT--TGTCTTTCGGTG----ATTATTTCATCAAGATTAAAAGTATATGGTAAATGTATTTACCTTTCAAGAAAACCTCTGGAGATACGATGTAGTTGTCTAAGACTGAATTTTTCACTT--CCGTTATGGGTCGTGTTTTCCAGAAATGATGAAATAAAGATTTCTATCATGGCTGCAGCCACCATCAAGTCATGTGTTGCAAAGATATTGTTGAGGCTGGAAGG--TGAACTTCCTCTTTGAGGTcaatgctattt

a score=25721
s chr3           105942619 1278 + 160039680 aagttatctccAGCTGTTAAATCATGTAATTCTTATACATAATAAA----GAAGTGCTATTTCAGAG---TATGAAACTT-ATAAATTCTGTTTCAAACAT--TTTATTGCAAGATGCTTTAGTTAATTACAAGTTTAAATTATAACTTGGTAA-TTTCAGTTGGGCAGCAAGTTGCTG------CAAGTTGCTTATTCAAATTATGATCA---GATAACTCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGTTAAGCC--ACTAAGTGGACCTTGA------TCATTTT-------------------ATTTCAATAGATAGCAATACAGAAAGAGTTCTTCACATATACTAGTTCCCATTTA----ACTCTCTCTGGCTATCACAACTGAGAAAGACATATTCACATAATTGGCTGAGCTTGAGCCTTCTTTGCAAGCAGCTTTAGATCTTCAATGCACTTGGCAATGGTCTCCTTTTCCTGTAATAAGGAAAGAGA----AATATAGTTCTCTC--------AAGAACATGAAAGGGTGACATAATTCTA------------------------------------------AAGTACTTCCTACTAGAACA-----TCAAGAT--TATTG-----------CTTAATATAGAAAAGCTTACTAATCACAAG----AAAAACGAATTATAGTACACTGGATAGATGCAATTTATTTTAGAAATAAATCCTGGGAGTGAG---TTCCAGGATA-----------GAAATAAATCCTGTGAG-----CTAAAATTTCCTGGTCC--------------ACAGCT------TTTATGAGCAAAAC---CTACAAAAAACTTAAGGC--CAGAAATGTTTATA--------ACTACTTT--------------TACCTGTTAGTTTGGGTAAAAATAGCTCCTTAAAAAAGA-CCAGCCAA------CAAACACCA-----GCAATACAGAA------ATATTAATAATGAAAACAA---------------------CTggggctggagagat-----------------------ggctcaggaggca---tgggcactcact---------tcctactctttcagaggacctgagtatggttctcagtacccacatcaggtggctcat---------------------------tgctgtctgta-----------------act--ccagctccataggatttgagga----------------------ttctggcct--------------ccatgggtacctgcattctg--------------------------------------tgtgcgcgcagacacacatactaaa-----CAGCACGTGAACGCTAACCTTCAGGTCCA----------------------------------------------ACCAG--------AGAAGATACAAAAGGTCATAATGTACCTGCTGTACAGAAATGCTCTTCACCACATGCTTTTCTACCCAGTCTATCATGTGTTCTTCCTCCTTGCGACGCATCATGTTCTGTACAGAGATGTGGTAGTCCAGGCGATTCTTTACCTCCTTATATGCTTTATGTAGCCGTTCCCGGTAAGTGACCTCCAAGGCCAGGGCAATGTTATTCTGGGGGTGAGGGGGAGAATTAAGAAATAAT
s HiC_scaffold_1 116567882 1705 - 233722169 AAGGTATCTCCAGAACATAACAGTTTTTACTTTTACTCATGACAAATACTGAAATGTTACTTCAGAGAATTATGGAACTTGAAAAACACTGTTTCAATTGTCCTTTATTGCAAGATCATAGAACTAATTACAAATTTAACCTGGAACTTGGTAAACTTTAGTCAGGTAataagttttaataaaaacaaagtgtttatttaaaa-atgatcacAGAACAACTCAAAATGCAAAGTAAGGATGAGAAACATCTGACTGACCAACATAGTTAGGTCTCACTTAATGAAATCCCAAGcttttcatttttaggaaaagtAAAACTGTAATTTTAGTATACAACAATATGGGAAGGTTTTGTTATACAGACTAGTTTCCATTTAGTCAACTGTTTCTGGCTGTCTCAACTGGGATAGATACATTTACATAATGGGCTGTGCTTGAGCCTTCTTTGCAAGCAGCTTTAGATCTGCAATACACTTGGCAATTGTCTCCTTCTCCTGTGGTAAGGAAAGAAATCTGGTTATATTCTTCTACAACAATGAAGAATAAGTATGATAAATATAATTCTACatgatatataatgtatataatatatatatcatatttataaaagATAACTCCTACTAGAACAGAACCTCAAGATGATATTGGCTTAACATGCCTTAATATGTAAGA--TTACTGG--AGAAGTctggaagaaaaattatttaaca-gaGAGAGACGCAATTTACCATACAAGCAAATCCAGGGAGTTAAAATTCCCTGGCTCACAGCTGTCATGAATGAAATTGGGTGGATACTTCTATAATCATCTGTTCTTGCTGTTGGTTTATACAGCTAACAAATTCTTGAAATAAATTAACTAAACAAAGATTAGGAATACAGAAATATTGGCATTTTCCAAGTTACTTCAATAACTtggaaagtatatattatttttg-tgtaAACAGTTAAGTAAAAACAATCCATCCAGTTTTGGCAAACTCTGTTTTTGTAATGCTGAATAGGTTATATAGAAAATGCTAACAAATGCCTCAATAGGCTATGTATCTGGGACAGAAAAAATTtagtcataaataaataaacagaagttTAGAAAATAGTTTAAGCAAGTAATagaaaacatttctgttcaagAAGATGAATTAAAGAAGTTGGAAAGAGGACACAGAATGCAGCTCATGGGATGGGAAATGGACGAGGCTCATTTTGctttatatagaaatatatggATTAGTATTAACCAACTG-ATGGAATACGAACACAGGCCAATGACTTTTATACTGTTTTGACATATGCAGTAAGAAATTCTTTATTAACTGAACTCTGAtgaaaacagaaagctttcagaGCATCTATTTGAGTAGTGTCTTTTAAGATAAACATCCAAAAATAGTCACCTTGCCATTTCTAAGCTAAAGATTCTTAGTTATTCCTCCCTTCCAAAGCAGTAGCAGACACTTGTCCGACATACCAGTACACTTCAGAAGCTACAAAA---CACTGTGTACCTGCTGTGCAGAGATGCTCTGCACCACTTGCTTCTCCACCCAGCCTATCATGTGTTCTTGTTCCTTTCGCTGCATCATATTCTGCACAGAAATATGGTAGTCCAGGCGATTCTTTACTTCTTTATATACTCTATGCAGCCGTTCCCGGTAAGTAACCTCCAAGGCCATAGCAATATTATTCt--------gggacaaaaataaaaaatgat

a score=11513
s chr3           105942697 380 + 160039680 TTCTGTTTCAAACAT--TTTATTGCAAGATGCTTTAGTTAATTACAAGTTTAAATTATAACTTGGTAAT-TTCAGTTGGGCAGCAAG--TTGCTGCAAGTTGCTTATTCAAATTATGATCAGATAACTCCGCATACAGAGCAAGGATCAGAAATAC--------------------CTTACTGGCCAATAGGGTTAAGCC--ACTAAGTGGACCTTGA------TCATTTT------------------ATTTCAATAGATAGCAATACAGAAAGAGTTCTTCACATATACTAGTTCCCATTTA----ACTCTCTCTGGCTATCACAACTGAGAAAGACATATTCACATAATTGGCTGAGCTTGAGCCTTCTTTGCAAGCAGCTTTAGATCTTCAATGCACTTGGCAATGGTCTCCTTTTCCTGTAATAAGGAAA
s HiC_scaffold_1 141075314 431 - 233722169 ttttgtttcagttgtCCTTTGTTGCAAGATCATAGAACTAATTACAAATTTAACCTATAATTTGATAATCTTTAGTGAGGTAATAagatttagtaaaaataaaatttaaaagtgatcaTAGAACAACTCAAAATGCagagtaaggaaaaaaaatgcagagtAACGATGAGAACCATCTGCTGGGCCAATAGGTTTAGTTCTCACTAAACGAAACCCCAAGCTTTTCCTTTTTAGGAAAAGTAAACTGTAATTCCAGTAGACAGCAATATGGGAAGTTTTGTT-ATATACACTAGTTTCCATTTAGTTAACTGTTTCTGGCTGCCTCAACTGGGCTATCCAATTTTGCACAGTGGTCTGTGCTTGAGCCTTCTTTGCAAACAGCTTTAGATCTATAATATACTTGGCAA---TCATCTTTTCCTGTTGTGGAGAGA

a score=6881
s chr3           105943685 112 + 160039680 CCTGCTGTACAGAAATGCTCTTCACCACATGCTTTTCTACCCAGTCTATCATGTGTTCTTCCTCCTTGCGACGCATCATGTTCTGTACAGAGATGTGGTAGTCCAGGCGATT
s HiC_scaffold_1 141075730 112 - 233722169 CCTGTTGTGGAGAGATGCTGTGCACCACTTGCTTCTCTACCTAGCTTATCATGTGCTCTTATTCCTTTCGATGCATCATATTCTGCCCAGAGACATGATAGTCCAGGTAGTT

a score=11247
s chr3           105951576 301 + 160039680 CCACAGAAACCTACCCTCTGCACATCGAAGAGGTAATGGCGCTTCTGAACCAGTGCCTGCTGTGCCTTCTCCATGTCGATTGCATCCTGGATTTGTTTCATGCTCGACTGCTTTACTTCTTCTAGTTGAGCAATTTTTTCCTGTAATTATATTACAGT----GTCAGTTGAAACACCAATGCTACCAAGA--ACAGTCATTTTAATGCTCCCTC--AGTTTTATTCCT-------CATCTGTAAAAATTACCATGATGAAAAA-----TACAGAGGGAAATACACAAATCTTTAGAAGTTATATAATATCAATGAATAAAA
s HiC_scaffold_1 116573201 307 - 233722169 CTACTAAAACCTACCCTCTGGACATCAAAAAGGTAGTGACGCTTCTGAACAAGTGCCTGCTGGGACTTCTCCAATTCAATAGCATCCTGGATTTGTTTTATGGAAGCTTGCTTTACCTCTTCTAGCTGGGCaattttttcctgtaa--ataaaacaataaaagtcaGCAAAAACACCACGAGTAgtaaaaatacattcattt--atGCATCCTCAAAATTATATTCTTTGTGAAGCATCCATAAAGATACACATACTGTATGAATCCTTACAAAGAACAGTCCATA---------CAGCTATAAAACATC-TTGAATAAAA

a score=5656
s chr3           105951606 112 + 160039680 AGGTAATGGCGCTTCTGAACCAGTGCCTGCTGTGCCTTCTCCATGTCGATTGCATCCTGGATTTGTTTCATGCTCGACTGCTTTACTTCTTCTAGTTGAGCAATTTTTTCCT
s HiC_scaffold_1 141075834 109 - 233722169 AGGTAGTTGCGCT---GAACAAGTGCCTGCTAGGACTTCCTCAGTTCAGTTGTATCCTGGATTTGTTTCATGGAACCTTGTTTTGCCTCTTCTAGTTGGGTAATTTTTTGCT

a score=38468
s chr3           105953856 2279 + 160039680 TCTATCTCAAAGTATTGACTAACTGCAACATGACTATAGCTAT-GTAACTACATTTATTGGCGTACCGTTCCCTCTAACGTTTATATAAATAATAACAATA-TTAGGTAACTGGGATGTTTCTGCTATAGTCTAAAGTGGGAAGTAAAGTTTACGATTCTTACCTCATTAAGTTTGTCAATAAATTCTCCAAAAGAGGCGCCATATTTCTTAATCACATAGACTATCAACCCTACTACTGATATGGTAGAGAAGGTCTCTGGGGTAATCACATATATTTCTTTGGATAGAAAATACAAGCTAAGTCCAGTTCCAAGCACATAAGGTCCTAGAAAAACAAAGAGTTATTTTATATTT---CATGTTATGTCTA------TGCCTACTTCA--CAGTTGGGTATCTCATGGCAAAGTTAAA-AAT-------GATAATCAGATTATACACATACAGATTA----------AGCAGTATG-CAGAGCTGAAAGAA----GATCTGGACTAAAGGAAATCTGTATCATGACTCTAAAACCTATCAGAAACAGAAATCAGTATAAtctttgaactttagtttcctcaaaggggaaacagtaccttcttcccagggctgataaaac--agaaataatgtaaatgtgaagcacgtagcTAGA-GGAACTGTTCTACAAAGACATGAAGCTGCTCCCTACAGTAATCGCTCCAGCAATATATCCTGTTGATTGAATGGATACAAGGGACAGGA-----CAAAAAACTGCCTGTGTTTATAGA--AAAGTTAGGATGCAAAAAAACCCAAAAAACCACCACCACCACCAACAAAAAGGAATTATTAAAAAATATACACATAAAAAAAGATTTAAATTGTCAGAATTCTGGGAATTAGGACACAAATAATTTTCTTTCTAGATTCTTT-----TAAAAGTTGAAATTTATg-atgatttagtggtaaagagcatttgttgtttttgcagagggtccatgtatgaactaacatctacatggtaa-------ctcacaacctttata---acttcagctccaggagact------caatatcctcttctggcctctaagagcact-----gcattaaagtggtgcacacatatatatgcaggcaaaacattcacatatataaaaatataaatTTTAAAAGTTGGTATTTACACTAGTGCATGGAGTGAACCGATGCTT-------------------TTCCAAAGCGTGGAACTAAAGTGGCCTTCCAGACA-----GTCTTGCTATGTAGCCCTGTGTGGCACCGAACTTCCC---GTG----ATCACCCTTTTGTCAGC-----TTTCTGCAACCATGTACAGCGTCTTAATCGCCACAATGGATTTT----GAAGGGCCCATTGTAT-TAATATTGTAATGTTTACAAGATCTGAAGACACT----CATTTTCTT-CAATTTCAGATAAGGAAATGCTACTTTAGGGCAGTCTAGAGCTTATAACAAATTTTGGGTTTCCAGTGTTCCATG-------TAAGAAAGGCATTGTATAGAGACAAAACAAATAAACAAACACAAAATCTTAGCCAAGGGACCTAAGTTCCAATCTAGTTCAGCCACAAGTGGGGGGTAAGGCACCCTTGCAAATCACTTTTCTAGATATTCTTGATAAT---AAAAGCT----------TTCATGGGAATGTCCAAGTATTAAAAAGCAAAAGTGAAATCAGGTATTATA---AAAAAGTGTGGTTCTGAAGGTTTATCTCTATAACAACAATCCATGAGAGATGTTCCTACTTGTCCTTAAGATATGTGTGCACAACACATTCTCTGTAATAGTTTCATTGCTTTATTTCTATTTATAGCTCCCTTTACTATCTGAAAGAGTAGGATATGCAGGAACtaaattttaaattttttattaatGTCCCACAATATCAGACATTTAACTTAGTCCACTATTGTATGGCTAGAACAATGCCTGGCAGTAAACCAAAGAAATTAGCATGATTAATAAATCCCAATAATAAATAGAACCATAGCTATAAAACGAAA--------CAAAACACTGAAAAACAT------TCATCTCAAAGTTTATACAGAATCACTATTA--AGTTCTTTTGGAGAAAGAACTGACTTGATTTTAATAGTATCA----AATATAGTACTAAT--GACCTGGCAGTGCTCACCTGTTACACCAGTCTTAGGGTAAAGGAACTGGAAAAATTCCTCAGGAATCAGCCCAAGACGCACTTTTCCTCCATATTCAGGAAGAGGTGGTAGAGGGGCAAGGCGAGGCTGTCCTGTGTGAAAGGCCCTTGTTGCCTGTAATACCCTACAAGCAACAATTAA-ACAAATTTAAAACCAATTTTTCAAAGAAAACAAAACACAAGAACAATTAACAAAACCATGAAGGGAGATGGAGACTG
s HiC_scaffold_1 116573546 2158 - 233722169 TTTATCTCAAATTAGTAACTAACACTGACATAGCTGTAATCGTTATAATTAGATTCCTGTATGTGC---TTTCTCTAACATTCATATCAA----AACTATAATTATATGGCTTTGCTATTTCTGCTACAgtctaaaatgtgaaataaaatgtatgattCTTACCTCATTGATTTTATCAATAAACTCTCCAATAGAGGCACCATATTTTTTAATTACATAGATAAGCAGCCCTACTACAGATATGGTAGAGAAGGTCTCTGGGCTAATCACATATATTTCTTTGGACAGACAATACAAGATAAGCCCAGTTCCAAGCATGTAGGgtcctaaaagaagaaaaagttataGTATGAATAGACATGCTATGCCTAAAAGGTGGAATACATAAGACACTTAGCTATTTCAAGACAAAGCtaaataattatttgaaataacCAGAT---ACAAAGACAAAATATCAGACTGAAAACAATATGGTAGAGTTAAAAGAACTAAGATCCAGAGTCAAGGAAAC---TATCCTAACTCTACAATTTATAAGAAATAGTAATCGAAGTAATCTCTGAAATT-AGTTTTCTCAAATGGGAA-CAGTATCTTCTTC--AGAGTTGATGAAACTGAGAAATAATGTACTTACACAATAGCTCAATAAACAGAACTATTATACAAAGATGCCAGGTAACTTTCTGAAGTTACCTGCCTGGCAAAATATattacttattaattggaaacATCGGAGAGGATTGTTCCACTGCTCGCCTATTTTTACTGATAGAAGCTGACATAGGAAACAAGCAAGAAAA-------------------------AGTATTATGTAATACATATGTAAAAAGAAGGATTAAATATCAGAATTGT-------------CAA---------CTTCCACAGCCCTTAATTATAATGCTTCAAATATATGTACCATTTTTTTAAACAGGCCATGAGTCC------CAAAGATACAAAGCATGATTTAAGATTTAGGATACAAACATTTCTTTAGGATTTTTCTATGTATCTCCTCAACAGAAGGCTAAAACACAGTAGACCTTTAGGGCATTTTACAATGTTTCTGAGTAACAAAG-AATGTTAGGATATATTATGAAGTAAAACAACAACAgtctcaaatatat----tttaca------tagatTCTCTA-TACAAAGTCTCAATAGAtactcccttttttctttctttttctttttgtttttgagacaa----ggtcttcctaacacagtgatcctcctacctagGCCTCTTGAGTATTGAGGTTACcactgtgcaccaccacactcagcccaaCAGTTCTTTGTGAAACTGCCTTTAgtgtatacatttaaaatatgaaactgaCAAGAAATCCTTATggtatgtaatatttt----tttaTCATCTGTGAAGATGCAACGACACTGTCTTGCAatttcagttaaggaaaa---actGGAGGCTAccctagtatttaaaaaaaatctctgattTCCGGTATTCCATGGTTATAGCAAGGAAGGca--gtacaggg--------------------------------ctgggga------------tgtagttcagtgata-----------------------------------taGCTTTTGCTGAGCATGCAAAAAGCCCTAGGCTCAATTCACAgtaatg----agaaatgaaaa-caaaaacagaaacaggcaATGTGTGTAATAAACAGACTTCTAAA--CTTAAATCGGCCACAA-------TGAAA-------------------AAGGTAT---TGTACTACATAGG-----------------------ATGTTAACTTA--------------ATCAGGGAGCTTAGG---TGCAAGTCC--AGTTCAGTAACTAGCAACATAACCCCACAATAGTATATACC--ACATA------------ATGGCTCAAACAGTGCCTGCCACCAaa---gaggtattaa-------aaaaaaacttatcaaTAGATGTAAACAATGTTATTAAGTTAAAATCTCCCCCAATTCACCCACAGACAAGACCAACCAAGTCAACTATTGTACTGAATCATTTCCACAATATCTTTT-----ACAAATTGGCT-GACTTTAGTGGAACCATCCAAATGTACTATTAAATAGAGCAGGCAA--CTCACCTGTTACACCAGTTTTAGGATAAAGGAACTGGAAGAATTCCTCAGGTATCAGCCCAAGACGAACTTTTCCACCATATTCAGGAAGAGGAGGTACAGGAGCAAATCTTGGCTGCCCTGTGTGAAAGACCCTTGTTGCCTGCACAACCCTATAGGTAACAATTGACACAAATTTTAGacc--tttttcaaataaaacacaatgcgTAAACAAATAGTGAAACGATGAATGATGATGAGGATTG

a score=10400
s chr3           105954009 174 + 160039680 ATTCTTACCTCATTAAGTTTGTCAATAAATTCTCCAAAAGAGGCGCCATATTTCTTAA-TCACATAGACTATCAACCCTACTACTGATATGGTAGAGAAGGTCTCTGGGGTAATCACATATATTTCTTTGGATAGAAAATACAAGCTAAGTCCAGTTCCAAGCACATAAGGTCCT
s HiC_scaffold_1 141075933 175 - 233722169 ATTTTTTGCTTATTGAGCTTATCAATAAATTATCCAAAAGagacattgtattttttaaattctgtaaataAGTATCCCTTCCACAGATATGGTGGAGAAGATCTCTGGGGTAATCACATGTATTTCTTTGGACAGAAAATGCAAGATAAGCTCAGTTCCAAGCATATAGGGTCCT

a score=8732
s chr3           105955894 148 + 160039680 CCTGTTACACCAGTCTTAGGGTAAAGGAACTGGAAAAATTCCTCAGGAATCAGCCCAAGACGCACTTTTCCTCCATATTCAGGAAGAGGTGGTAGAGGGGCAAGGCGAGGCTGTCCTGTGTGAAAGGCCCTTGTTGCCTGTAATACCC
s HiC_scaffold_1 141076105 148 - 233722169 CCTGTTCCACGAGTTTTAGGATAAAGCAACTGGAAGAATTCCTTAGGAGTCagcccaaaataaacttttccaccAAGTTCTGGAAGAAGTGGGAAAGGAACAAATCCTGTCTACTCTGTGTGAAGGATCCTTGTTGCCTGCAATATCC

a score=11716
s chr3           105957274 1155 + 160039680 TGAGCTACTCTCTCAGTCCTATGTCCTCCTTCTGAGTATCACCTTATGCCTCTAAA-ACATCAGTGACCCCACCAAGCTTCGAAACTGAAGAACCATGGTAGAGATCCTTTCATATAAATTagggtttctcagctccaacctgattaacatt-tggcctgcatagttctttgctgcagatagatggctcttctgtgcat---gtttagaagtatccctgtagctgctgaatggtagcaaccaaaaaca------ttttcag--------acactgtcaaatgtcacctggaa----aatcAGCTAAAGGCTGAATCCTACTGGTTTAGATCATACCATGAGAGAATTT--TTAGAACTTTTAACTACCATCTC------------AGTTGAAGCCTTTATTTTCATTTTCTTAAAACTATTTTAACAACTCCAAACCTGATGGCTCT---TCTTGTCAAATATTCCTTAAATATAGCTCTTTCATATTACTGCCAATGCTTCT-AAATCGTGA-TCTGACTTGAAAACTCTTCAGCAGGCTCTCCTCTGTCCACAGAAAACAAGTAAC--AGCACGGGCTAACCCAGC------CCCTGCAAATTTTCTACATTCATCTTTCCTTAATGCCTCACCTATA--------CTCACATCTCTCAAGCCACAAGGTGAATGACAACCAAAGA---GCTTAAAGCTG----------------------------AAAGACggtcaagagtgcttactgctcttcacaggaccagatttggttcccagaacctatgctgggctgcccacagc--------aacctctaactccagctgcagatctaatacctttttctctgcctctgcaagcacacacgcacacaaaaataaa-------------------attattaaaaaaaaa-----aaaaaGAGTTTGACATTCTTTG------------------GAGAAAGCAGGGC---------------TGGCATT-------------------AACAGTACATAAAAAAAGACCCAAGACACAGATG----------------AGGTTAATTCAGGTTTTCTTGGTTTTGCTA----TGTTTAGATTTTATTGCAATAGGGATATGAGCTCTGAAGGGTTTTAAGTGGGGGGAACTGCCAAGATCTCTCT-GCTACATTGAGAATGGACTGTATTGGGATAAAAACAG--ATGTTAAGACTGAA--AGCCTA-GTGAAATTGTCCATTTCAGAACTGTGGGCAGCGGCTTCATGCT-GTAACAATGGTAGTGAAAGTAGTCAGACTCAAAGCATCCTCACGAGTTGAGTCTTACTGACGGATTAGAG
s HiC_scaffold_1 116576638 1268 - 233722169 tgagctacaaccccagtctCAT--CTATCTTTTGAATATTAT-TTATGCTTTTCAGTATATCACTTAT---GTGAAGCTTTAAAATTGAA-AGGCACGCTTAAGATCTCTTCACCTCA-------TTTCTCAGCCTCAGCACTAATGACATTCTAGACTGGACAACTGTGTATTACACA-AGATTG---TTCTATGCATAATGTTTAGT-GTATTCCTGTGGTCTTTATACACTAGATGCTAACAGGACCCTGCTCCTCTGTGGTGACAACATTGCCAAATGTCACCTGGGAGTCTAAACTGCCCA-TGTTAAAAACCACTGAtttcaatcccagcactacagaACTTGCTTTAAGCTGATACAAATCTTCTTCCCAGCTGGTTTAGTTGACACCTTAATTGTTGCTTTCCTAAA-CTTGGCTAACAATCCAAAACTTGATTGCCCTGCTTCTTGTCAAGTACCCCTTAAACCTAGCCTCTTCATATTATTGCCAATGTTTCTAAAAATGTGATTTTGACTTGGTAACTCTTTAAAAGGCTTTCTCCTGCCTCCAGAAAACAAACTACTTAACAT------ACTCAGCTGAGAACCCATCACATCTTATGACCTGTTCCTTCATTCTACTTCCACCCATATGGACGTGCCTATTTCTCTCAA-----------------AACTAAAAACTTGCTCTACACTGTTCCTTCTGCCTGACATGTCCTTCAGTTAATGACTGCCAAG---TCCAATCAGTCTTCA---GAACATTTCAGG----CACATCTTATATAAAGGTGTCCCTAACTTTGGACTAACATTTAA--CCAACAACACATCTGA-------TTTTTTACTTATGTGAGGCACTAGGAACATAGCAGTGAACAAAGTCCGCCTCATGGTGGCTGTGAGAAGGGTATGTCCATACAAAGTTTCACATGCTGTAAGTGCTATGAGTAACAATGGGACAGGAAGGCCTTTGGTAGACTAGGTGACATTTGAGCCAATGATTTGGAgcaaatataaaaggaaaatgagctAA-ACATAGAAGGAAATGGACGAGAGGAAGGATGGATCAATTCTTGTTATCTGTGTTAAcgctgtttgggtttt-tttcaagAAGAATGGGGGCTCTGAA-GGTTTTAGGTAGAG---ACTGACATAATTCCTTTGGCTACTGTGAAACTGTGCTCTGCTATGACAAGACTAGTCATGAGACCACTGGAACAGCTTAGGTGAAA-----------------GTTGATGGTGTTTTCATTATAGTAGTGATGGTAGGGGAAGTGATGAGAATCAAAATAATCTGGAG-GAGGAGCCTTGCTGATGTACTGGAG

a score=47074
s chr3           105958436 1755 + 160039680 CTACTGTGTAGCTGTCTCTAGGACTAGGGTTGTTACTGTGATCTCCACAAAG---TTATCCACTGTCACATTATGTGATCAT--------CAACACAAGCATTTACG--AAGCCATATGTGTTTTCGGCCTCCTGATATGGTTAATAAAAGATGGAAATCTGGAAGACACCCAAAACAATAGGTTTTATTTTGCTGTATTTAACCAGATCTGTCCTTGGGGGTAAGTAAGCCAGTAACTTG--------GTTGTGTGTCGCTGAAGGTCACAACGA--GGGGTGAGCCT-----------------------------------------CTCTTTGGTGTTTGTCAGAGGAAGGAACAGGATCATGTTCAAGGCAATTAGAAGAACAAACGTCCGAATGAGTATGCAAGCTGGCTAACGTGAAGGAAAACAGCAATTTTTGGCTTGACGCTAGGAAATGGAAAGAGAATAAGACGTGGTG----------------------------ACACTCACCCTGGACCTAGGGCGGCCGCGTTCTTCAGACACGGGGCTGGAAATACACAAGACGGAGGTTAGCAAAGTCAAGGAGAAATCGCGTTTCTACCTTCCCGGGTGTCGGC------------------CCTGGCATCCGTCTCTGCC-GCGCCCTGAGATGCT-----------GGGCGGCCCGGGAGCTCTCCAGATCGCTCCCGTGGGTGAGCTCGGGCCCAAACGCCGCAGTCCGTC----------------------------------CTCTACC----CGCTTCCCGCCT-----------------------------------CCCCGGCCTGGCTTCTTCCTAGTCACCCTGCTACGCTAACCTAGGCTCTACGTCTCTCACCCGCTGTGGCGGCAGCAGAAAGCACCACCCGGGACAGCATTGTCTGCGAAGAGCGGGACAGCGGGCTCCGTGTCCCTGTGACCCCGACCCGAG-CCTGTCAGGGGCAGGAGCAAGATGGCCGCTCGCACATCTCGCGAGAAGAGATCAGCTCGCTTTTTCTCGGAAGTTCTCGGCTTTTTCCCCGCCCCCTCCCCACTATCGCGAGAAGAGGAGAAAAAATGGGTGGGGCTGAGGGAGGGAAACAAACAAAA----TCCCGCTGCGGGGACAGGAGACGGAAAAGCAGGCTGGAAGGGTAGACACAATTCTCGCGAGAAGTAGAGCGAA---TTCCCTCGGAGAGGGGCGGTTGCGCAGAGGTACACCACGTGT--GCGGTCCCTCCGGCGCCGAGTCAGGGTCTCTCGTCGAGT---CTGGGTCTAGGTTAGATTTGGAATCGTGGAGATGCGGAAGGACACCCCTCCTCCGCTCGTGCCCCCGGCGGCCCGCGAGTGGAACCTGCCCCCCAATGCGCCCGCATGCATGGAACGTCAATTGGAGGCTGCACGGTACCGGTCTGGTGAGCCGAGATCCCGGGGCCTGGAAGC----CCCTTTACCCCCAGTCTCGGGTGCCCTCTCCCGGTGCTGACCCTCTCGAGTCCTCCCAGCGCCGTGTGGCCCTCCTCGGCCATACCTGGCGTCCTGGCCCTGCCCCAGCTCAGCTCCACAAATCCGATCTCAGATTCAGACTGGTCCCGCCACGGGGTTCTGTGAGGTTACCATAGAAACAAGGCCTTCCA-TCTGACACCTTATAACTTTGCTCTCCCCACCGTAGATGGTTCCCTTCTGCTCGGGGTCTCCAGCCTGAGTGGTCGCTGCTGGGTAGGTTCTCTGTGGTTTTTCAAGGATCCTAGTGCGGCCCCCAACGAAGGTTTCTGCTCTGCTGGCGTCCAGACCGAGGCTGGAGTAGCTGACCTCACTTGGGTGGGGGACAAAGGTATCCTAGTGGCTTCTGATTCAGGTGAGT--------------------GATCCCCCTCCCCTGGAATTGAAGAGTTGGGTACAGGGTAGGATGGG
s HiC_scaffold_1 116579204 1886 - 233722169 CTACTCTGTAGCTGATTCTATGCCTAGA-TCG--AATTTGAACTCCTGAAGGCACTCAGCCTTACTCACATT-TGTGGTTATGAGAATGGTAAGAAAAATAactacagaaatcaataaatgatCTGACTATCATGACCTGGC--AGGAAAGGTAAGAATACACGAGACATT-GAAACAACATGCTTCACT--GCTTTATTTAACAAAACCTTT-------AGTTTATAACTTAGTAACTAGCTGTGGCAGCTATGTGTAGCTGAAGGTCAGAAGGGTGGGGGCGGGGCTTAGAAGACAGCAAAGCTAGTTTCTAGTTTAGTAGTGCAATTCTCTTACATCTTTGTCTTTAGACGATACGAGG--ATGCTACTGGCAGTTACAGGAAGAAATGTT----TGAGGCTTTAAGCATTCTCAAATTATGAAAG---GTAACTTTTAGTCTAAAGCTAAGaatagaaattaagaaatgaaatgatgtgCAAAACCAAAGGGAACATTGCACTCCACACTTACCCTGGTCCTAGGAGGGCTGCGTTCTTCAGACAGGGTGCTGCAGATATACAACACGCAGATCAGCAAAGTCAAGGCAAAATCTAGTCTGTCCCTTCCTCTGTCGCCGCAGAGTACGACTCTTAATGCCATGCAACATTCTTTCCCCGTTCCCCTATATCCCTTTTTGTTTTCAGACGAACAGGTCACTCACCA-------------------CCCAGGCACAAAATTCACAGGCCGCCAGGGGCACAAAGGAGGTGGGGTTTCCTTTCGCATCTCCACCGCTCCAAATCTCACCTAATCTCAAACTACACAAGCTCCCACTCTTTGTATCCCCTAGATTCGCTTGTTTCCAATCACTTTCATTTCCTCGACCAGGGTCTACACCACTCACCCGCTGTGGCGGCAGCAGAAAGTACTACCCGGGACAACATGGTCAACAAAGGTCCAGGAACCGGTCTTGGCGTCCCTGTGACCCCGACCTGAGACTTGTCAGGGGCAAGAGCAAGATGGCCGCTAACAAATCTCGCGAGAAGAGAACTTCGTACCATCATTC-----CCTTCAATTTTactccagtttttttctttctctcgcGAGAAGAGGCACAGACC--------GCTGAG-------AACTCACTAAAAGTGGCCCGC-----------AAGCCGGAA--GCGGGTTGGAAGCCTAGCAGAAATTCTCGCGAGAAGTAGAGTTAACATTGCCTTCCAAAAGGGGAGGAGGCACGGAGGTCTACCAGGTGGTAACGGCTGCTA----GCTGAATCTGA-----TCGGCGAGTAGTTTGAGATTAGGTGGGATTTGGAGCCGTGGAGATGCGGAAGGAAACGCCACCTCCTTTAGTGCCCCCGGCGGCCCGCGAATGGAACCTTCCTCCTAATGCGCCAGCCTGTATGGAACGACAGCTGGAGGCTGCACGATACCGGTCTGGTGAGCCGAGATTG-GGGGCCTGGGAGGGATGCTCCCTCTCCCGACCCTGAGATTCCGCTTCCCAAGAGTGAT--TCTCGAGGCCTCCTCAATTCACGTG-CCATTCTGACATCTGTCTCGCGTCGCCCAGCTGCCGGAATCCTGTCCCATGTCCCTGAGCTCAGATCCAGACCCGGCCCGC-GTGCTGGTCTGTGCAGTTACCATAGAGACGAG---TGCCACTCTCGCGCACTGACACTTTGTACTCTCT--CTTAGATGGGGCACTTCTGCTCGGCGCCTCCAGCCTTAGTGGTCGTTGCTGGGCCGGTTCCCTTTGGCTTTTCAAAGACCCATGTGCTGCTCCCAATGAGGGCTTCTGCTCCGCTGGAGTCCAGACGGAGGCCGGAGTGGCTGACCTCACTTGGGTGGGGGACAGAGGTATTCTAGTGGCCTCTGATTCAGGTGAGTaactttccccttcccttcccggTCCCCCTCCCCGGG------AGGCTTGGTTACAGGTCGGACTGGG

a score=32072
s chr3           105961230 1061 + 160039680 AGTATTTCAAGACATT----------TTATGTAAGCAAATATTTACTAGTGTCTGCATACCTGGGAAGAGACATCG----TCA----CTGAACTGTT-------ATCTAAATAAGGCTCTCTGGGAACCGATTGCTTAGGACCTGCTTTCT---GGAAGCACTAGAATTGATTTTA------CATCTTATTTCCCTATCTCCAGGAG---TTTTCCTCATAGGCATCTGGCCTGTTA--GGAAAGCAGTAGGGT---AACAAAACCAAACGGCCTGGAAGTCAGCTAAGC-CGTTAGTGACGTGGACTTTGCTTTTACA---------------GTTGGCTCAGTAGCAATTCTTGCTTGAGTCCTAGGCAGGAGTTCCTGCCTTGGTACAACCCAGGCTCATGCTTCCCTTGTCTGCACCTCACCCCGCTCTGTCCCCAACAGGTGCTGTTGAATTGTGGGAGCTAGATGAGAACGAGACACTTATAGTCAGCAAGTTCTGCAAGTATGAGCATGATGACATTGTGTCTACTGTCACTGTCCTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAAAGACTGCTGGTGAGTCCCTGTTTTCATTATTTCTATATCTAGACTTCCTGTGGATATCCCATCTATCCTGTTAATTTCATTATGTAAAATGCTTTGGGCTGTTTTTAG--TCTAGTGAGTA---ATGGCATGTC----TGTTTCCTAAGAGACTTGGTAGTGCATTGTAAATAAAAC--AGCAGGAGTCTAGGAAAC--AGAAGTGGGACATGTTG-----------------TATGGGTATATTTTAATGTTGATACTGCAAGTTAATATT-----CCTATT------TTTTTTTTGCATTGTAGCATCAAAATTTGGGACCTGGCTCAGCAGGTATCACTGAATTCATACCGAGGTAAGTGTTG------AGTCCTGCCTATAGTTATCTTTTCTTTCCCCTTTGGGATATTTGAACAGTGTTTGGGTAACAGTAGTAGCCA--------GTCTGGG---------TTCTTTTGATTGGTCTTTCCTTACCCCAAAACTACAGTCAGGTTCCATTATCTGCTTCCTGTCCATTTCTTTGTGCTCCCGTTTCGGTTGATAGTCTCACAGCCTTTTGACTAAGTGGGtgtctta---gttctgttctct
s HiC_scaffold_1 116581114 1150 - 233722169 AGTACTTCAAGGAGCTGAGAATGTTGTCAAGTAGTTGAGCAATGATTTGTGTCTAAATAATTGGAAAGGGTCACTGGGTTTCATGTGCTGAGATGATTGTGGAGACTTCATCCTTGTCCCCTGGGAAGTGATTTTCCA----TTGTTCTCTCACGGGAGCAGAATAATGGCTTTTGTAGTTTCATCTTTCATTGCTCTCTTAAAGTAGTTTTTTCCACATAATTGTCTAGACCGTTACTGTCATACAGTAAGGTTGTATTAAAACCAGGTAGCCTGGAAGTTAGCTAAACTCCCTAACGTTGTGAGTTTCCCTTTTATATGAATAACTTACTTTGTTAGTTTAGTGGCAATGGTTGCATGAGTTTTAGGAGTAAATTACTACCTTGATATAATCTAAGTTCACATTTCTCTTATTC--------CTTCATTTCATCCCCAACAGGTGCTGTCGAATTGTGGGAGTTGGATGAGAATGAGACACTTATTGTCAGCAAATTCTGCAAGTATGAGCATGATGACATTGTGTCTACAGTTGGTGTCCTGAGCTCTGGCACACAAGCTGTCAGTGGTAGCAAAGACTTCTGGTAGGACCTCGTTCTCATCATTTCTGTCCCTAGACTTTCTTTGGTTGTCCTTACTATCCTGTTAA---------GTAACAT-TTTAGGCCTATTATAAGAACTTCATGACTAATTATAGCATGTTACTGTGTTGCATTAGTAATTTGGCAATTCTTTGTAAATAGAACATAGCAGGAGTCCAGGAGCCAAAGACATGGGACATGCTGGTTAAAGGAAGTTCATCTTTGAACACATTTT--TGTTGGTAGTGCAGGCCAAGATTAATTGTCTGTTTCCTCATTCTTTTTGCTTCTTAGTATCAAGATTTGGGACCTTACTCAGCAGATGGTACTAAACTCATACAGAGGTTAGTATTTCTTTTCAGTCCCCCCT-TAGCTGTCTTGTTTTTATGCCCTTTAAACTTTGGAT--------GTTAAGAGCAGCAGCTCCATATTTTGCCTGGaaggttttcctttgtttgtttgttttttgtttttctaagaacTATAGTCAGATTTCAATATCCACCCCTTCTCCTTGACTCAGT-TTCTTATTTCTATTGATGCTCTCATACCTTCTTGGCT--GTAGAGGACTTAAATGTTCCATCTTCT

a score=85615
s chr3           105964006 4252 + 160039680 [encoded data, 4695 characters]
s HiC_scaffold_1 116585006 4182 - 233722169 [encoded data, 4695 characters]

a score=126284
s chr3           105971727 8337 + 160039680 [encoded data, 10157 characters]
s HiC_scaffold_1 116591987 9284 - 233722169 [encoded data, 10157 characters]

a score=15659
s chr3           105980063 249 + 160039680 GGTGAGGCTATCTTCTTTCCACCTACAGGCATATGCTATGAATTACTGGAGAAAGCTTGGGACACCCGCAGATAAACTTATTATGGGTTTCCCCACCTATGGACGTAACTTTTACCTCCTCAAAGAATCTAAGAATGGATTGCAGACTGCCTCAATGGGACCAGCATCTCCTGGGAAGTACACCAAGCAGGCTGGCTTCTTGGCTTACTATGAGGTGATGTGATTAGAGAACTTTATCTCCTGGCTGGG
s HiC_scaffold_1 116601948 249 - 233722169 GGAGAGGTTGTGTTTTTCCTCCCTACAGGCATATGCTATGAATTACTGGCGAAAGCTTGGGGCACCCTCAGAGAAGCTCATCATGGGGCTCCCCACATATGGACGTACCTTTCGCCTCGTCTCAGCTTCTAAGAACGGGTTGCAGGCTGCAGCGATGGGACCAGCATCTCCAGGGAAGTACACCAAACAAGCTGGCTTCTTGGCTTATTATGAGGTGATGGGATTAAGGACTACTATCTAGCAGCTAAG

a score=24320
s chr3           105980422 1026 + 160039680 AAACTCTGCTTTGTGTTGGATCATGGGAGATAGTTTCCTGCTAATCTCATGAAGCATGGCTGTCCATGGTCTCATAGTTGAAAGAATGTTTCTTAAGGGCATGGCATGATAGAGTAAAGAAACCTCAACTACACAAATGTTTAAAGTGTAACCAACCAACCATCTAAACAACCAACAATCACCACCACCACCACCAAACAGCAAGAAGCACCACAGGGACTGCCCTGGATGTTAACTTCTGAAGCGCAGCTTGAACACCTGTACTTCTCTGTAATACTCAGTTTCTAGCACAACCCTGGGAGTTCGGTAGGCATTCAGAAGCCTGGTGGGTTGTAACTACCCATTTTGCCCTGCCTCCAAGATCTTTAGATGTACTAGAAGTTCAAGGACCAGTCAGATGGTTACCTAGATA--GGGCAGCTTAATCTGAGAATTTACGGACACAGGAGAGACTTGTTTATGATGACAACATGACAAATGCAGGCCTGGTCACAGGTGGGCTTTG----TCTTAGTGTTGTTGTGCTTGACTTTGT-TTTTGGTGAATGTCACTCACTTTTCTATTTCTTTATAAAAATTAATTAGTTTTTGTTTTTACTGTGGACACTAGAGGAAGGGTTATGTAACAGAAGGGAAAAAGTCGGAATGTAGAGGAAGTCCCTTGTGGAC--AGTTCCTTTTGCTCCCTCTGGGGTTTCC---TGTCTCAGGCCCTGGTGAGAGGCTTTCCCTGAATTCTTTCTACTGAGCCAAGAAGCAAGTGTGTCTACTGGTGCTTCTCTTCAGGACATT-CATGGAACTCACATGTATCTTCCTGGTAGGTTTGTTCCTTTGTCCAGAGAGCAAAAAAACACTGGATTGATTATCAATATGTCCCGTATGCTTTTAAGGGGAAGGAGTGGCTTGGCTATGATGACACTATCAGTTTCAGTTACAAGGTGAGACACTTGTTCTTTCCTGTTTTGTTATTCAGATTCTCATTAGCTTTGATGGGATTCTCCTCCATTCAT-------ATtctctctctctccctctctctctcc
s HiC_scaffold_1 116602967  921 - 233722169 AAGCTCTGTTCTATGCTGGATGGATATGGACATTTTCCTGCTAATCCAATGAAGCATGCTTATGAGTG-TTGCATAGTTGGAATAACGTTTTT-----GAACAATATCATGGGTCAAAAAGAGTTTAA-----------TAGAAACTGTAA---------------AATGCTCAAGGA-----------------AAATAG----AAGTAATGTAGAGA------------TGAACTTATAAACCCTAAATTGGATACATCT-TTTTTTTGCAGCATATGGTTTCTAACACAATTCTGGACATTGGGTTGATACTTGGATGCTTGATAGATTATAACAGACTACTTTTCCCTGCCTTCAAAACCTTTAAATCTACTAGAAATTATAGCACTTGTTTGATAACTGCCTATATATAAAGCAGTCTGTGTTGAGACCAAATGAACAGAAGAGAGATTTGTTTatgaaaacac--ttaaaaatgcAGGTCCAGTCATGGGTCAGGTATGGTCCTCTTAGT-------------ACTTTGCACTTTTGAGTATATCATGTACTacccagttctctt-----------------ttttttctcatcatgGATGCTA-AGGGAGAAAAATGGAACAGA-GAAATTTACTCACAAT----AAGAGCTCTTTTGTGAGTGGAGTACCT---ACTCCTTCTTTGGTCTACCTATTTTTTCATTCCTGGTGAGGACTTTT---TGGCATCTTTATCATGGAGCAAGGAACAACCATGCTTCCTGGTGTCTCTCTCTGTGGCACTATATGggactcactgtgatcctcctgacaGGTTTGCTCCTTTGTCCAAAGAGCAAGAAAGCACTGGATTGATTATCAATATGTTCCATATGCCTACAAGGGGAATGAGTGGGTTGGCTATGATGATGCCACCAGCTTCAGTTACAAGGTGAGACACTGgttctttcccctcct---------cctctccttcgcttt------ctttctctccacttGCCCCTCCAATCCtgtcccttttctcctttttcttc

a score=30950
s chr3           105984803 1582 + 160039680 TGTGTGTAGGCAT-TTTTTGGCCCTCAAAGTGTTGAAAATACTATTTATTT-TTCTTGAATGAGGTAACCAAGAAAGATAAGAGTCATATAAAATTTCTAAGATTCCACAGCTAATGAGAAGTAGATGCTAG-TGTCCATGCAGATTCTAATCTATCTGCCCTCGTTCATTGCCTTCCACACAGTTGCTCTT----ATTCTGCTTTGTCCCCTGTACCAGACTAGATGTTGTTAGTA-----ACTGAGTGTTACTTT-ACAGGCAATGTATGTGAAGAGAGAGCATTTTGGGGGGGCCATGGTGTGGACACTGGATATGGACGATGTCAGGGGCACTTTCTGTGGCAACGGCCCTTTCCCTCTTGTTCATATATTGAATGAGCTCTTGGTGCAGACAGGTAAGTAACTA-GACCTGGA---------------------AACCAGACACT-GGTGGGTCCAATCTGACAGGTTTAATTTCTTTG--------ACTTGACGTTGAGGGAAGATAGAAAACTTGAAGGCCAACCAA-------------------------------------------ATTTGACCTCTTGGAGCTTTCCTTGCCTCATCTA-AAACTGAAAT--AGTCTCAGACTGAGGACAGTAT---TATACGAACTA----AATGAGAATTGGATGAATAGCATACTGTTTCATGGTTAATGTTCA-------------------------------------------------AGGGACTAGAAAAGGGATacacacacacacaca---------cattacacacacacacacacacacacTGGCAGTTAGGAGA-------TATAATGCAAGAGCTGAAAT-CCCTTAGAGA----------------------GCTAGAGATTCAGGCCA------AGCCCTTACAGTGGCTCTAATCTAATTGTTTACAATTTGCTGTCTAG-----TCTCTGACCTTTGCTTTGTTTCTGATACCTTCTTCAATGTGCTGG-ACTGGCAGCTTCTTTTTGAGGTGTCAACAGCAAATCAGGCCTTGAACAAC-------------AGGTCTGGCTAGAGGTACTGAGGGAGGTTAAAATGAGGCTTTAAACAGGAAAC----TAAGAGCCTTCCTTGAATTAGGCACCAGAAATGCAG-AAATTCACAGATGACTCA--GTTTGGGCCTACACTAACACCTTAGAGTAAGGGAACAGAGAGTTTGTGTGGTGGGATTTTTATCTTCCCCACTCTGGGAAGTAAATCATGAAATCCTTCTATGA-GGGCTTTTGAATCCAGTTCCTCAACTTTGGAGTGGAATTAATAAGGaatgatgataataataataataatgataatgataatgataataataataataataataataataaGGAATTAATAAGAAAGGAAGGAAGAGGTAGAAATCTTACCTATATTTTTTCCTGATGATTTTTCTCCAGAATCCAATTCAACCCCCTTGCCACAATTTTGGTTTACATCTTCTGTGAATGCCTCAGGACCTGGCTCTGAGAATACAGCCTTGACAGAGGTATTGACCACTGATACCATAAAGATTTTGCCCCCGGGAGGAGAGGCTATGACCACCGAGGTCCACAGAAGGTATGAAAATATGACTACAGTTCCTAGTGATGGATCTGTAACCCCTGGA---GGAACAGCATCTCCTCGAAAGCATGCTGTAACTCCAGAAAATAACACGATGGCTGCTGAGGCAAAAACTATGAGCACACTGGACTTCTTTTCTAAGACCACCACTGGG
s HiC_scaffold_1 116606456 1661 - 233722169 TATATATAGGAATACTTTTGATCCTAGAAATGTTG------TTATTCTTTTCTTCACAAATAAGGTAACCAAGgtacataatatttatataaaaat-----gatccAATAGTTAATAAGTGGCAGAGGCCAGATTTAAATACAGGCTATGCACAGTATTGC----TGCATTGCCTTTTGAAAGGTCATCTTTTGGTATttgatattgtatccagtctGGAGGGAAATGAATATAGCATGTTGACAAACTGTTATTTTCACAGGCAATGTTTGTAAAGAGAGAACATTTTGGAGGTGCCATGGTGTGGACACTGGACATGGATGATGTCAAAGGCACTTTCTGTGGCACTGGCCCTTTCCCCCTGGTATACATCCTGAATGAGCTCTTGGTGAAGGCTGGTAAGTAGCTGTGACTTGGAAGCTAGGATTGGAATTTTCAGAACAAGACACTGGGTGGGTCTGTTCTGCTAAG--TAAATTCTTTGCTAAGGCAATACGATattgaataaagagaaaaaattttgatGTTAGTCAATGTTTTCTAGTCTCGGTTAGGATATTTGGACCTTACTAGAGATATTAGATCTCT--GAGCTTCTTGTGCCCTATCTATAAAATGAGAGTAAGCTTTACACTCATGACATCATTGCTATAAGAACAAGTGGAATGAGAACTG-----------CACTGGCTTATAGTTAGTACCCAATATATGTGAGctgatatttctctgtttctttcttttgcttttatgggCAAGGATTAGAAAAGGAA-ATTTAGGTTCTTTCAAGATCCTGTTGTTATAGAGGC---------TACCCAGACAGTTAGGAGCTGGAACTTGGAATGCAAGAACAGTAACATTTTTAGAGATTTCTATAATCCTCACATTATGGATGGAAAGACTGGTGATTTGTTAGATCTTTAAGTGGGCTTCTCCCAAACATTTACACCATACTGTCTAGAGCCTTTTTTGCCAGTACCTTTGTTCCTGGTGCCTCCTACGATGTGCAGACAAGAGAGGTTTCTCTCTGAG-----------AACTCAATTTCTGAGGAACTGTGGTTGGGGGAAAATCTTGCTGTTAGTGCAGAGG--AGTCAAACAGAGGTTCTATACACAGGGCTTTATAGGTCACTCCCCAGAGTCATTCACCAGAAATGTAGCACACCAACAAAGTGCCCATGGCTTGGGATCATATT-ACATTATGGGGTCAGGGAGAATGATTCTTGTGTGATGAGATTTTTATCTGTGC--TCTTAAGTGGTAAATTGTTAAATCTTCCAATACTGGGTTTTTGCAGGAGGTACTTTGATGTTGGAGTGGTTTTAGT----CCTGACGGT----------------------------------------------------------AATtaataagacagaaagaaagaggtaGAATT------TACactcttttctaattatttttttctagaggTCAGCTCAATTACTTCACCACAAATTTTGCCTTTATCTTCTATGAATTCTTCAAGATCTGACTCTGAAAGACTGGCTGTGACAAAGGCAATGGCTACTGATACTGTTAAGATTTTGCCTCCAGGAGGAGAGG------------------ACACAGTCCATAAAAATGTAACTACAATTCCTATGAGTAGAATTGTGACTCTTGGAAGGGAAATAGTATCTCCTAGAAAACACAGTGGAGCTCTGGGAGGAAAGAGTGAGGTCTCCGAAACAAAGATTATGACTTCAGTGGACCATTGGTCTGTGGGCACTGCAGAG

a score=20402
s chr3           105986818 1139 + 160039680 TCCAGACACAGGCAAATGAGGCAGAGACCACAGCCACAATGGATCATCAGTCTGTAACCCCTACGGAGATGGATACGACTCTTTTCTATCTAAAGACTATGACTCCCAGTGAGAAGGAAACTTCCAGGAAGAAGACTATGGTACTTGAAAAGGCCACTGTTTCCCCTAGAGAGATGTCAGCTACCCCTAATGGACAGAGTAAAACTCTAAAATGGGCAAGTTTGATTACTGAGGTAGAAACGTACTCCCAAGATGGGTGAAATTG-------------------------------GTCTTCCAGCTCTATTGTCTTGTTCCTATGATATACTTCTTTCATTTTTGAAAAATGGCTTCACTCTTACTGATAGGAA----CCATTTGTCAATTCAATTGCCCTTCTAACAAATCTTTCTCTTAAAA---AAAAAGAAAACCTAGAAAACTCTGT---TATGAATCAAAGATCATGAGCTCCATTGGTGGCAAATCCGAGGGAAAACACTTGTCCTTTCTTCTATGTGATACAACAGACGTTACCTCATGTTGCC-ACTCACAAACCGTT-ATGGGGCAAAGCTGGCACCAAAGTCACCATGGGGCAATCTCCTAATCTCCTTTCTATTGAATAAACTGGAAGCATGAGAATCTTTTTGTGGTCTCTGCAGTTCCtttctatttttgtttatgtatacgtgtgtgtgcctgtttgagtgaatgcttcacacatgcagatgcctaccgagggcattggcttcctttgaatcaaagttacaggtggctgtgagttgcctggcatgggtgctgcaaacccaactctggggttctacaagagtggcaaatacttttaacTTTTAACTCTAGCTC---ATCCTGGGATTCTTAAAATGATCTCAACAATCCAGTAGTCAGCTTCTTTCTTTCAAGGTGAATTCTCTTCATTTCTGGCTTTGGAA-ACATCTTGAGTCTAGTCTCCAGTGATGTTTTCTTGTGTAGATTTTGGGATTCCTTCTTTAATAGTAGCCATACAGCACTGGCTGGGGGCCAAGCAGGATTCTATCTCTTCTGGAAAGGTTCCCCACAATCTTAAAGGGGATCTGTGAAGAAGAGGGAGAAGGTGAATTTTCCAAGGACATTTTCTTTTTGGCTTGGAAAATTTCATTTGTTCTCATaaaaaaacaaag
s HiC_scaffold_1 116608139 1042 - 233722169 TTCAGACAGAGACCCTTGGGGAGAAGGCAGTGGCCACTGTGCGTCATCAACCTGTGACCCCTGAAGGGATAACTGTGACTCCTGGGCATCTTCAGACTAGGATCTTTGGGAAGACAACAATACCTAGAAGAAATGCTGTATTCATTGAAAACAACATTGT---CCCCAGAAAGATGCCAGTCACCCCTGCTGCGAAAGCTGTGACTCTACCAGGGGAGAATTTTATTTCTGAGGTAGAAACCAAC-CCCAGGATGGGTGAAAGTGGTCGTTAGGTGTGAGATGAAAACTGGATGCTGTCTTCCAGCCCTTTCATCCATCTTTTAAGATGCATTCTCCTTGCTTTTGGCAACC-CCTTTATTCCCACTGATGGAAATCATTCATTTATTGACTCAGTGACCTTTGCAACAAGtcttctttctaaaaaataaaaagacaacccaaaaaaatttttctgtgtGGATAAAGAATATTAAGCTCT----GTAGCAGAAACTA-GGAAAGCTCTTGTCTTTTGTCTTATGTGAT--GACACAAGCAACTTGATCTTACCTGTTGATAAAACATTCACTGGGTAAAACTGGCACCAAAGCCACAGGGTGTC--------GATCTCTTTTCTGTTGAATAAATTGGAAACATAAGAATCTACTTGGAgtctctg---------tttatttttgttgttgt-------tgttgttttgtttttttaaatccatctc------------------aggacctcg------------------------------------tgcttggca--------------------------------------ggcaggtgcttgtgccactgaactatatctccagccccttattttcttaaaataagttGGAAAACTGAATTGTTAGCTTA-TTCTTTCTAGGCCATTTGCCTT--TTACTATTTTTGAAAGGGACATTGCTTCAAGTCTACAATAATGTTTCTCACTCTGAATGATGGGCTTCCTTTTCTGCCATTATCAACAGCTCACTTCATTG----CTTGTTGGACCCAGTAACTTCTCCAGCAGGTTTCCACAGTCTTCAAGAAGAGCTAGGAAGATGAGGAAGTA---GAGTCTTCCAATTATGTTCTCTGTTTGGT----GACATCTTAGTTGTACT--TGACAAAGCATAG

a score=18271
s chr3           105992651  941 + 160039680 TCCTCCTTTGTAC------CCTTAATTTAATTTTCCTTGCATGCAA-ACTCTGTGCCCAGGCTAAGTCCTGAAT--------------TGTCTTGTGTGTTCAC--ACACATGCATATATGTACCCACTATGGTGAGTCCATAGAAAAATGCACACATATGTGGATATGAGTGTTCTAGAGAATGCTGCCA------CATGCCTCATGCTTTTCTCTGTGATTTGAACTCTGTGAAGTTAGAGACA----GTTCAGGAATGCTTTCCATTTCTTATGGCTGTGTCAATACAACCAAAATCTGAAATCTGAGAT-----------GAGGATGCAAGAAAGTATGATGAGCTAGCCACTG-TGGGCCTGGGAACCAGACCAGGCCTTTTGT-------AGCATCCTTTTCAGGAAGGC-CAAGGAGGAATCTCACAGGGGA-TCACAGGAAGTGGGGCAGGGACTTAGGCCC----TTTGTGTTCCCATTTCTCTGGAGCTCCCCATATTTGTCTTTCCCTTCTCTTAGTCTGTGATCAGTTGCAATGACATACAGGGCATGCCCACTATCACTTTCACCATCATCAAACCCATTTCCTCCCCTCTCCCTTACCTATATGTTC-AATGCACACACTT--ACCAGGATACCTGCTGTATACTTTGATCAGGTTAGCCTAAGCA----GAAGCTCTTTGTCCCAGCTCATACCTGGACAGCTATGGTGGAACCAGTAGGAGCAAGGTTGATGTTGAATAAGAATTCAGAGCACAATATGAGTGTAATGAAATATAAAGTGGTT--------------------------ATTGCAGT-------------------TTTG--------GGGTTGAGGCCACT---AACCTGACATTCCCCAATAGACAGTCCCTGTGAATTATGGGAGCCATTTTCCTCAAGAATCTTTATTCTAGGACAAAGCTAACAATGAGAATAGGTGGTGGGGCTGCACTTCCTCTGCCTAGATTAGCTAG----AGTTCTTTTTTTACCGTTCTTGGCAGGGCTCTGGGGACCTCTTGGTGTTT
s HiC_scaffold_1 116623178 1003 - 233722169 TTCCCCTTTGTACTGATGTCTGTGGTTTACTTTTCTCTGCATGCAGGAATCTATGTCCAGATGAAATCTTAATTCTGTAAGTGTCAGATGTCCTGTGTGCACGTGTACACCTGTGAATGGGCATGCACTGTAGTATGT----GGACACAGGCACACAACAGTGAACTTGAGTGTG--AAAGAATGCTTCTAAAATTGCATTTCCCAT-CCCCCCTTTCTAATT---GTCCTACCAAAGTTTAGATACCGTGTTCTAGAATGAGCTTCATTTTTTATGGCCATGCCAATACAACCAACATCCAAGAGCTGTGATGTATTTAAGGAGAAGACTCAAGGAATcaagaggagctggtcagtgttGAGTCTGGGAGTCAGATTAGGTCTTCCATGCTCTCAAGCATCTTCTGCTGAAAGGTAAAAGGGAAAATCTTCCAGGGGGCTCACAGGAA--GGAAACGGGACTTGGGCCCCTTTTCTGGGCTCCCAGTTTCCTAGAG-------TATCTGTTTCACATCTTTCCT-GTTTGTGGTCAATTGTAGGTATGGACAGAACAAGCTCTCTATGACTTTCATTGCCA--------GTTCTCTC----------TGCTTATGTCTCCTAATACACATATTTTCACTCTGAGCCTTCCTGGATACTGTGATTAGGTGGACCCAGGCACCTGGACATTATATGTCCTAACCCACAACTGAATAGCTATGGGGAGATCAATAGGGGCCAAGTCAACACTGAGCAAAAATTCAGA-CTCTTCATGGAAGTCATGAAATGTAAAGCAGTTAAGTTCCTGTGGGAAAAGGTGCCTACAGTGCAGTTGGTTATATCTTTATGTTCTTTGTCTCTGCAGGACAATGGCTACTGTAGGCTTGAGGTT-----GTGAACAGCCCTTATGGTTTCTGGGAGATGCGTTCTTCAAGGAATGTTACTCTCCGAT-ATGCCAACAATGGA----------------GGGCTTTCACTTCTTAGATTATCCAAAAACAGATGTTTTCCTAACTTTCTT--CAGGAGTGTGGGATTGTTGTGGTAGTT

a score=90109
s chr3           105996901 5189 + 160039680 [encoded data, 5922 characters]
s HiC_scaffold_1 116624185 5346 - 233722169 [encoded data, 5922 characters]

a score=15787
s chr3           106013632 1176 + 160039680 CTTTTAAAAATTAAG--ATTAGGGTATTATGTATCAGTC---TATGAAATTTTGTGCTGCAGAGTGTGTTACTGACAGATTTAATAGTAGAACAAGAAAGTGAA-CATCATGAAATG-----TCACCCACAGCAGGCCTTAGAGCTGAACAAGATTGGGAACCTCT-ATTCTGAGGAGTGAAAATACTA----CTACAGGAGAGTTGTCCAGAGGAAATTGATAGTGAAGAGGAAGCCAACTTCCTAAATCCTCCCTTCTAGACTTTCTTAAATAAATGTCACACTCTGTCATTTAGTAATAACATGTgaacacaggctgtgaagtctcatagactagtgtgcaccaagtcctggtttgtgtttcctatcttcatgatcttgtgggaagtactgaagctct-taggccctggtgtatctataaaggaataaAGGTAATTGTGTGTGACAATAATCACGTCTTCCCTCCGAGGGCTGCCGTGAGACTGTAGGGGTCCACTGGGGCAGTTCAGACATGTAGATTGAGTGTAAACTTGCTAATACACAGCTGA----------AATGCACCTCTAGCTCACCGCTTCTGTGCCCAGGTCATTAGCCAGCTCCAAGGGC------------ACTTTT------GTTCTAATTTTTCTGATTGGAGAACTCTCTTTGCCAAGGCTTCTAGTACAGCTAGCTGGGTCGGTTCTCCTTCCAACCCAGGACCTGGTTCCTTCTCTTATCCTCACATGAGCTCTATCCTGCCTCTTGACAATTTATTTCCTACCAGGAAG--GGGGTAGTTTCCCTTTCATATATGTACTAGAGCCCGAGAGATTCATTACCATGAGTGATGTCCCGAAGAG-------CATGATGTTCATTCCGTTGTGTGAATTCATTCTCTTTGGTCTTTTTCAGTTCTTCTTCTACCTTAGCCCTTTCAGATGCCTCAAGAGATTTGAATAGTAACTGCATTGCATGACAACTTTCAGGGG-------GCTTGACGTCCTCCTCATTTTCTGTCTTCATGAGCCACTACTT-CCTTCATAGGCTTTAAACAAGAAAATGAAGGGTGTTCCCAAGACTAGCTGCTAAGCAACCACCCTGCCTTAGAAGCTCCCCTTTAAGTCATTATGACATGGTTTTCTGCAAAGCAGCACTGTGGTATAAAGGCAGATAGAAAGGCTGATTTGAGTAGCAACTCTATCAGTGACCAACAACAGGATACTAGG
s HiC_scaffold_1 116630528 1066 - 233722169 cttttaaagacagaatACTTCTGGTATTATAT-TGAGTCATTTATGAAATTATATAGTTCAAA-----TTACCtgcaaatttaattttaagataataaaggaaagtattataaaataatttattatttaaagtaaGCTTTGAGTCTCAATAAAGTTAAGAAACTCTGACTC---GGAATAAAAATCCTAAAATCCAAAGAATAGGTGTGTTTAGTGAA--AGAGGTAAGAGGGAAACAGATTTGTTAAATCCTACTTCCAAGACTTTCTTACAGA----TTACACATTTCCATCTGGGGTAGAAGAGTGAACACAGGCTTTG---------------GTTTTCAACAAGT--------------------------ATCT----GAAGTTACTTAAATTATCTATGCTTTGATTTGTCTGTAAAACACTAAAG---ATTGT-------------------TTTCCTCCTAGGGCTGCTATGAGAATTTAAACATTAAACAGGG------------ACAAATTT--TGTATACAAAGTAACCCAGAATtgataaaaatgttaatgtatatCTAATCTATCACCTCCATGCCCAGGACTACAGCAATCTCTAAGGGCTGtacaaataacaattttaaaaaggtgcTTCTTTATATAAGTGGGTGCTACTCCTTACCAAGGCTTATCAT---GTTAAACAGAACTCTCCCTCATCCAACCGGGGATCAGGCTCCGCAAATAATCCT---ATGTATACC--CCCACCTCTT------TCCTTTTAGACTACAAAACTGGGTGAGTTT-----TCATACATTCACTAGAGCATGAACG--TGATTACCAAGAGAAAAGTCCCAAAGGAATGGCTTCGTGGTGT-CGATAAGTTGTGGTAGATCATATGCCTGGGACTTTGTGGGTT--TCCTGGA----AGCGCT---------------GGACTTGAATGGT------------------TCTTCATAGGTAGTTGCGATTAATGTC----TCATAAATTATCTCCATGAATCAACACTCATCTACATGGACTTTAACctagaaaaacaaatag------aaaagtgGCTGCCAAGTAACAGCCCCACCCTAAAAGTTCCCCTTCAAGTCATTGTGACATTGCTTTCTGCAAGGCAACATTGTAATATAAAGAAAGCTGGAAAGGC-----CCAGAATTAACTCTACTAATTACCAATTACATGACCCTGAG

a score=19404
s chr3           106023952 1070 + 160039680 CTAAATTC--AGTTGAGT-TTGGGCTTACTCTGTAACTACCGAAATTCTCCTTGGATCAAACAGACTTTGAGTCTTCTAAAGCTGAAGACATTTCCTTCTTTTCCTGCTTTCCTCACCTGTACCAGGACAGTGAAGAGATGTTTGTCCCTAGAAGGGCTTCCACGAGACCCAGGGAACTGCCAGTCCAGGTTCAGTCCATCAAACCCATACTGGCGCAGGAAT--TTG--------ATGGCTGAGTTAATGAAAGTCTGTTGGTTGTGTGGAGTGGAGACCATGGCACTGAACCTGAGGGAGACCAAGAGAAGGCAGGGTAAGGCCTCCGTGATAGTAACATATTGGGATTAAAACACTTTACAGGCCCAAGTCTGTCTCTGAGCTCTTCACTAGGATGTCTCAACCTGGTGCATACTTGTTCCTGTTTTTTGCCTCATCCTCTCTTTGCAACCACTACCCTTTTCAGTTTCAGGAG----TCAGCATTCACT-TTTGTTTGGTTATCCCCAACTATAACTATTCCCAAATTATTTTTGTTTTTCTGGATATCCAGCAATCTTAATTTACCATGT--TGTCTTCAAATA-CCCTCCAAGTTCATGTGCACTCAAAGAGGTCTTATGAGTAGA--------------CTTCT-TCAAAAGACAAAGAAGTTGTATAAGACCTTCCCAAGACCCTGTGCCCTTGAAATACTTTAGGAAGAGG-CACCCTGAAATCAGCTAGCTA-------------------------ATGCTGAAAT------------GGTGCTG------------------------------------------------------------------------------------------------------------TACTCAAATTT-----------------------CCACTTGAATTTAATCATATGATGCCATAGTAATCTTT---CCAGTATGTCCTGTTA-ATGATTAAGGCTCCTGTAAATCCACTGAGTTAACAGATTCACTTATGG--------AATACCTTC--ACTGATGTTGTGAAG-TACTGCAGTAGAGGCCAGGCTGGGCTAGCATGCTTTTAATAGTAATTGAAAGAGTGGTTTTTCTAGAGAGAACTTACGGGGCAGGTCCAAAGTCCCGTCCTCCAATGGCCAGGAGGGTTTTCAGCTGTACGTTTCTTAAAAGCAAAAGGT---AAAGAATGATTTCAAAATCCATGGATTCCTTTATTTAAAACAGATTTGATTTTTTAAAATT
s HiC_scaffold_1 116653680 1247 - 233722169 ctaaattcccagcgcagtgtttaattttttttatgacCACTCAATTGTTACTGGGA-AGAACAGACTGTGAACCTTCTCAGAATAAAGGGTATTCGTTTTTA------------CATCTGCACCAGTACAGTGAAATGATGCTTGTTATGAGAAGGGTTCCTATGGGTGCCAGAGTACTCTCAGTCCAAGTCCAGTCCATCAAACCCATACTGGCAGAGGAATAACTGAGGTAACTATAACTGAGGTAATGACAGTCTGGTGGTCCTCATAAGTGGAAACCACAGTAGAAAAATGAATGgagactgaaagaaagaaaggtaaggCTTTGATGTTCCCAACTCACTGGATTAAGAACAGTTCACTCCTCAATTTCAGCCTCAGAGCACTTCATCAGTATCCTTTGCCAAGGTTAAAGCATTCTActacttttc-tcttgtcctttctTTGTAACCACTACTCAGTCCAA---CAGTGGTGCCTCAGTATTCCCTATATTTTCCCCTCCCCTCAATT----TTTCTCCCAAATTTCCATTGTTGCTTTGAAGACCTGGCTAATTCAGGTCACTATGTTCTGTCTCCAAATAGTTTTCTAAGTTTATGTGCCTTTAAAAATGTCCTATTTGTGtataattttctgtttccttctgccAGAAGACAAATAGACCAAAC-TGATTTTCT---GAGTTTGCACTCTGGAAATACTTTACAAAGAGATTGTTTTGGAAGCAGATAACCatccaggtgtagtggcacatatctgcatgctgtaatcccagcactcaagaggctgaggcaggaggattactgcaagttcaagaccaccctgagctacatagtgagttcaaggccagcctacactaccaagtgaaaccctgtctcaaaagaatgtGAAAGCAGATAATCAAACTTCTGTGGGTGAACTCTCAGAATACCCACTCCAATTTAGCTATATTA------ACTAAATTTTGCCCTACTTTGTACTGAGATATGAT--------CTAGTAATTCATTatcttaac--atttatttaatgTACTGCACATTACTATCTATCTTACATTGTGAATCTAAAGCAACAGAAAACACATTGGGCCAATGTATTTGCAATGGCA----AATGAGCAGGCTTTCTATTGAGAACTTATGGAGCAGTTCCAAAGTTCCAGACACCAATCACCAGGAGAGTTTTCAGTTGACTGTCCCTTTAAAATAAgtgattaaaaagagaaatttcaaaatccat-gattccctttttaaaaaataatattgttttttaaCATT

a score=15458
s chr3           106028471 1008 + 160039680 TCACCACAAAAAAAGGTGAGTGTGTGAAGTGA-AAATATGC-ACTGAGGTCA--TGAACCATTCTAAAATGTAGGCATCATT-CAAAATTCTTGTCCTGTGTGATAAATATACATAAATGGTGTCAATAAAAATTGATGACATTGGTTGGGTCCTCATCCCATGGATTTTGTACTACATTTTAAGAAGCATTAATACGTGTCAACTATTGACCCAAGAGACAACAAATT-GACAGCTTTGCTATTCTCTGACCTGCTTTTTAGAGTATTTAAGGCTTGGTAGTCAGTCAAGTCATTCATGCTTCTCATGGTAACCTTGTTGTTCTGCATACCAGCAAAGGCATAGATGAGGTGAGTACACAGGCAGGGGTCAATATCAGCAGGATTGAAACTTCCCAATTTTGGTCTGTTCT-----GGGCTACATTATTATAGTAGCACATCAGCTGGTAGGCAGAGCCTGTGGGAGGCGAATAAGAATAGTGGCCTGATGCAGATGGCAATGACTTCTGTTGACAGTTTG------GTTCTGTCTTTCCCTTGTGGTACTCAGCACAGCACCTGTTATCTAGGAGGAGGTGA------TTGATGCTAAGACTCTTAAAAAGACATTGTAGCTTAGACCTCAGGCACTGACTTGAAGCTGATAATTATGACTGTGAC--ATTCATTTAGA------AGACGAGTTAGAAA---TCATA----------TCACCATTCCTATGAAGCTCTACAAAGGCTGTTTGTTAATGCTCAGGTGGGCATGCTACAGAGGACAGAACTGAAAGTTGAACTAAAACAGT--CTATTCCCAACAGTGAAAACCCATCTCTTTC--------------------------------------------------------CCTCATTAGTTTATCTCTTGGGAATTTTTT---CAAATATTATAATATGAGGGTATA-----------------------------ATTTAA---------AAATCA-------CAAAGAAGAAAACTGCACTAGGAATAACT--TGGAGATTTGAGACTTATAGTGGGGAAAGGTTTTGTAAACAATAAAACACAGAGCC-ATGACATACCCAGCTGAGGATTCAGCAGAAGTGCCAAACCTAGAGACAAAGAACAAATA
s HiC_scaffold_1 116679042 1068 - 233722169 TCATCACAAAAAT-GATAAGTATGTGTGGTAATCAGTATGTTAATCAGTTCAGTTGAGGCTTTCCGCACTGta--cattatttcaaaatagtt----tatgtgataaacatatgaaatttttattaactaaaat-----------------------------------------atattttaagaatctcTGATGTTTGGAAACTCCTGACCTAGAGGACACCAAATTAGATATCTGCCTTCTTCTTGTACTTGTTTTTTAG-TCATTGAAAGTTTGATAG--AGTCATGTCATTCCATTTAATAGCAGTAATCTCATTTTTCCTCATCTCAGTAAAGGAATAGATTAGATGAATACCCAGGAAAGGGTCAATGTCCTCAGTTTTGAAGCTCCCC-----TGGCCTGCTTTTACTGGGGCCAGTTCATG--------AAGTCAGCTGATATGCAGAGCCTGCGTGA---TAAGAAGGACAATGCCCTGATTTAG-TGGCAGTGATCTGTGCTGAGAGTTTGCCCTTAGTTTGCTTCCTTCCTTGTGCTTCT------AATGCCAAACTTCTACATGAATGTGAACACTCTTGGCCATGGGACC-----AAAG---TTTCAACTTAGAAATGAATTGTTGACTTGA-------AATTTTAACTTTGACAGACTCATTTTGGGATCTTGGATAGCTTAGGAGCTTTCAAAGAAAAGACGCTCAACAGTTTTATAAAGTTCAGTGAGTGCTGTTTGTAA---CTCAGGTAGTCAGGCTGAAAGGTGCGGCAGTGATAATCAGTCTAAAACTGTAGATGTCCCTAATGAGTCAAACCCATAGCTTTCCTTGCTGGgatttttctgtctctgcctccttgtttctctacctctgtctctgtcctctttgtctgtctatgtctctgtcactttctatgtatatatgtaaacatctgtgtatatatgtgcacatgtatatgtatatgtatatatgtaaagtATACTCAAGTCATATATATTAAAGCAGACAATTGCATTATGAATAATTCATAGGTACTTCAGG-GTATGATAGAAAAAGTTTTTGTCAATAATAAACCTTGGAGTCAATGAACTACCTAGCTGAGCATTCAGGAGAAGGAACAgatctagagagaaagaaagaaca

a score=20219
s chr3           106034649 416 + 160039680 AATACAAGTTATTGGTGG-----ATGGCGTCACTGTGAACCTGAGCAGCCGCGTG-----AACTTTGACAATGGCCAAGAACAAATTAAAAGGGCAGAAGTCCAGGAATGTATTTCATATAGCTAGCCACAAAACTTTCAAGGCTAAAAACAAGGCAAAACCAGTTACTACTAATCTTAAGAAGATAAACATTATGAATCATGAAAAAGTCAACAGAATGAACAGAGCTTTTGTAAATATACAGAAAGAACTTGCAAACTTCTCAAAAAGCCTTTCTCTTAAATCTGTGCAGAAAGAGCTGA---------AGCACCATGAAAATGAACCAGCTAACGTTGATGAAGCGACACGACTAATGGCTCAGTTATAATACAAAGATAGTGCATCACATTCCCCCAAAGATCAATAAAGTCAATGTTTCATACaaaaaaa
s HiC_scaffold_1  51097367 430 - 233722169 aaGATAAGTGAATAGGGGTGCACATGGCATCACCTCAAGCATGAGCAGCTGCACGCGGAAATCAAAGACAATGGCCAAGAATAAACTAAGAGGGCAGAAGTCCAAGACAGTATTTCACATAGCCAACCAAGAATGCTTTAAGTCTAAAGGCAAAGCAAAATCAGTTACCTCTAATCTTAAGAAGATAAACATTGTGAATGATGAAAAGGTTTGCAGAATGAGTAATGTTTTTGTAAACATTCAGAAGGAACTCGCTCACTTCTCAAAAAACCTTACTCTTGAAAC--TGCAGAAAGAGCTGGTTAATCAGCAGCATCATGAAAATGAACTGATTAATGTTGATGAAGCTGCAAGATGAATGGCTCAATTGTAATACAGTGGATATGTATCAAATAAAC---AAACTTAATGAAATAAGCATTTTATACAAACAAA

a score=10485
s chr3           106091514 576 + 160039680 CTTTCCCTGATAATTTTGAAAGACTCCTGTTGGCTCCCAGAAGA---GATATCCTGGTCTTGACCTAGGTGGCCACCAAGGCACAACAATGACTTGTGGTCTGGGAAAACTATACATTCATTTTTATATCCTCTCC----CCCCTGTACTATCAACATAGAC---AATTCC---ATTAAAG--ACCTGTTGGAACCTGGCTCCCAAAATTGGTTTCTAG-----TTTATTGGGTGATGTGGACTTTGCAGTGACTTCATTGA-GTGTTCTCA----GAAGAGCACTGGTTCCTTTTATAAAAGATTGTGGATCTTCAGACTGATAATTCTGCCATGT-----TCCTTTCCTGAAAGTCAGGGTCGGCTTGTGAATAGTTGTTAAACAATAT----------------------CCTT------AATGTGAAATG----------------------------------------------------------------------------------TCAACCCGCACTCTAAGC-TACTTCCCCCTT-----------------------TTCAAAGCATTGAATGA----------AGACTTCATTGGGTTTTATAGTGGCTTTCTTATCTTGGTAGTCTATACAAGAAGGGAATTTGTAAGTTATTGTATATTGTTGATTGTCTGCCCATGTCCTGCCTGAAGTACCATGGTTGTTTATGAAAAGTATCTTTAttgggaacaaaacac
s HiC_scaffold_1  54523673 711 - 233722169 CTCTCCTTTCTAGTTTTGAGGGACTTCT--TGGCTCTCAGAAGAAGAGGTTTCCTGACATTGACACTTAGAGACATCTTGGCACAA--ATGCCTTACTGTGTAGAAAAACTAAACTATCATTTCCTGCGCATCTCTAGGGCTCC---ACCTTCAGCACAGACTCTGTTTCCTTAATCCAAGCCATCCGTTGGCATCCA-CCCCTAAAATTAGTTACTAGAACTGTGCCTCAGGCAATCTGGACT-----GTGACACCACTGATACATCCTCACTTTAAAAAGCAGCAGTTCCTTTACTG---GACTGTGGACCCTCAGACCGGTAAttctgccatttgtatttcatttcctgAAAGTCATGAGCAGTTGATAAAGCATTGTTAAACAGTATACTAATTTTCACGTCAAACTTTCCTTGTTCAGAATATCAAATGAAGAGTTCactgaattttgtgttttttgttttttgtgtttttgagacaaggtctcactgtaaagtccaggctggccttgaattcagtacGTAGTCCAGGCCTGCTTCAAACTTGGAGTGACCCTcatgccttggcctcccaagtgctggattacagacatgccAGACTTCACTGAATTTTATAGTGGCTTTCTGAGTTTGGTGATCCATTGAAGAAGGGAGATGGAAAGTT--------------AATGACTGCCCATGTCTTGTCTGAAACA-CACGATTATTTatgaaaa--atcttt------aataaagcaC

a score=6117
s chr3           106115163 207 + 160039680 CAGGGTCTGCCTACAATCTGATATGCTATTTCACCAACTGGGCCCAGTATCGGCCAGGTCTGGGGAGCTTCAAGCCTGATGACATTAACCCCTGCCTGTGTACTCACCTGATCTATGCCTTTGCTGGGATGCAGAACAATGAGATCACCACCATAGAAT----GGAATGATGTTACTCTCTATAAAGCTTTCAATGACTTGAAAAACAGGT
s HiC_scaffold_1 116596049 210 - 233722169 CAGGTGCTGCCTACAAACTGGTGTGTTATTTCTCAAACTGGGCCCATAACCGACCAGGCCCTGCCTCTGTTTTGCCCCAAGACCTGGATCCCTTTCTCTGTACACACTTGATATTTGCCTTCGCCTCAATGAGAAACAATCATATTATTGCCA-AGAATATCCAGGATGAGGAAATTTTCTACCCAGAGTTCAACAAACTCAAGGAGAGGT

a score=5107
s chr3           106128829 193 + 160039680 TACAGGATTATGTCATGAACTATTGGAAGAACAATGGAGCCCCAGCTGAGAAGCTCATTGTTGGATTCCCAGAGTATGGACACACCTTCATCCTGAGAAACCCCTCTGATAATGGAATTGGTGCCCCTACCTCTGGTGATGGC-CCTGCTGGGCCCTATACCAGACAGGCTGGGTTCTGGGCCTACTATGAGGT
s HiC_scaffold_1 116601971 193 - 233722169 TACAGGCATATGCTATGAATTACTGGCGAAAGCTTGGGGCACCCTCAGAGAAGCTCATCATGGGGCTCCCCACATATGGACGTACCTTTCGCCTCGTCTCAGCTTCTAAGAACGG-GTTGCAGGCTGCAGCGATGGGACCAGCATCTCCAGGGAAGTACACCAAACAAGCTGGCTTCTTGGCTTATTATGAGGT

a score=5044
s chr3           106130597 148 + 160039680 TGATTCTCTTGACATTCAAAGATTTGCACCTTTCTGAGAAGTGGAGCCACTGAGGTCTGGGATGCCTCCCAAGAAGTGCCCTATGCCTATAAGGCCAACGAGTGGCTTGGCTATGACAATATCAAGAGCTTCAGTGTTAAGGTAAGGC
s HiC_scaffold_1 116603665 139 - 233722169 tgatcctcctgaca------GGTTTGCTCCTTTGTCCAAAG---AGCAAGAAAGCACTGGATTGATTATCAATATGTTCCATATGCCTACAAGGGGAATGAGTGGGTTGGCTATGATGATGCCACCAGCTTCAGTTACAAGGTGAGAC

a score=9424
s chr3           106160304 1018 + 160039680 ATAGTTCTTGAAATGGAGAGATT-TAAACCTTTTAGCACCAAAGAATTTTTCCAATTGACTGACCTTCACCAGAACACTGAAGAGATGTTTGTCCTTAGGAGGGCTTCCTCGAGACCCAGGGTACTGCCAGTCCAGGTTGAGGCCATCAAAGTTATATTGACGAAGGAAT--CTG--------ATAACTGACTGAATGAATATCTGACGGTTCTGAGGAGTAGAGACCATGGCACTGAACCTTATGCATATTGAAAGAAGTTAGTGTTAGACTTCTATGACATGGACACCTTGGGCACAAAACAGTTCAGAGTTGATTTTTGAC--------------TCCTTGTCCTTCACCAAGG---------TACCCTGTTTATCTCTTATCCTCCCTTTA-------TACTCACATCACC-----TACCTCATAATACCCTTTATTTTCCCACATCATATTAACTACTAACAACTTTCCATGGC--ATTTGAAATTTATGTTCATCT---TAACTCATATTTATCTTCAAA---CCTTCCAAGTTCATATCTAATACATGAAAATTTCTTCCTAATTAGGGGCCATAGTTTTATTTCTTGAACAGTTAGTCTAAAGCAAAATATCACC------ACCCTCTGGTCTGGAGAACATGAAATACTTT---AAGAGAACCCTTTTTTTTTAGTAGTTAAAAATCTCTCAGAGG-----------------ATGC----ATCCCA---------------AAATAGTAGGA------CAAACATTAGGACAACCTGTG------AATGACTTACATG--------------------------TACCTGGAAAGAATGT---------TTACTGTTTATTTGAGGCTCAATTGCAATTATTTCCATGTTAACCTA--CATACTCAATAGA-TTTGCTTTAATTTCCTTTCCAAAATGTGA---AGTAATCCAC------------------ATGTGATTTTACATCTCTAGCCTGCCTACCTT-----------------------------------TGTATCC---------------CATGTTTAC-----AGAACTTACGGGGCAGGTCCAAACTTCCATCCTCCAATGGCCAGGAGAGTTTTTAGCTCAGTGTTCCTCAAAAAGGACAG---AAAAAGCAAAATATCAAAATGCTTGGCCTCTATTATATAAAAATCTGTGCTTTTT----ATAAATATTTCTCATACTATTCA
s HiC_scaffold_1 116653723 1224 - 233722169 ATTGTTACTGGGAAGAACAGACTGTGAACCTTCTCAGAATAAAGGGTATTCGTTTTTAC---ATCTGCACCAGTACAGTGAAATGATGCTTGTTATGAGAAGGGTTCCTATGGGTGCCAGAGTACTCTCAGTCCAAGTCCAGTCCATCAAACCCATACTGGCAGAGGAATAACTGAGGTAACTATAACTGAGGTAATGACAGTCTGGTGGTCCTCATAAGTGGAAACCACAGTAGAAAAATGAATGgagactgaaagaaagaaaggtaaggCTTTGATGTTCCCAACTCACTGGATTAAGAACAGTTCACTCCTCAATTTCAGCCTCAGAGCACTTCATCAGTATCCTTTGCCAAGGTTAAAGCATTCTActacttttctcttgtcctttctTTGTAACCACTACTCAGTCCAACAGTGGTGCCTCAGTATTCCCTATATTTTCCCCTCCCCTCAATTTTTCTCCCAAATTTCCATTGTTGCTTTGAAGACCTGGCTAATTCAGGTCACTATGTTCTGTCTCCAAATAGTTTTCTAAGTTTATGTGCCTT---TAAAAATGTCCT----ATTTGTGtataattttctgtttcct------tctgccAGAAGACAAATAG-ACCAAACTGATTTTCTGAGTTTGCACTCTGGAAATACTTTACAAAGAGA------TTGTTTTGGAAGCAGATAACCatccaggtgtagtggcacatatctgcatgctgtaatcccagcactcaagaggctgaggcaggaggattactgcaagttcaagaccaccctgagctacatagtgagttcaaggccagcctacactaccaagtgaaaccctgtctcaaaagaatgtGAAAGCAGATAATCAAACTTCTGTGGGTGAACTCTCAGAATACCCACTCCAATTTAGCTATATTAACTAAATTTTGCCCTACTTT--GTACTGAGATATGATCTAGTAATTCATTatcttaacatttatttaatgT-ACTGCACATTACTATCTATCTTACATTGTGAATCTAAAGCAACAGAAAACACATTGGGCCAATGTATTTGCAATGGCAAATGAGCAGGCTTTCTATTGAGAACTTATGGAGCAGTTCCAAAGTTCCAGACACCAATCACCAGGAGAGTTTTCAGTTGACTGTCCCTTTAAAATAAgtgattaaaaagagaaatttcaaaatccatgattccctttttaaaaaataatattgttttttaaCATTAAGCCTGCTCATATTTTTTA

a score=9248
s chr3           106210409 1072 + 160039680 ATAGTTCTTGAAATGGAGAGATT-TAAACCTTTTAGGACCAAAGAATTTTTCCAATTGACTGACCTGCACCAGAACACTGAAGAGATGTTTGTCCTTAGGAGGGCTTCCTCGAGACCCAGGGTACTGCCAGTCCAGGTTGAGGCCATCAAAGTTATATTGACGAAGGAAT--CTG--------ATAACTGACTTAATGAATGTCTGACGGTTCTGAGGAGTAGAGACCATGGAACTGAACCTTATGCATATTGAAAGAAGTTAGTGTTAGACTTCTATGGCATGGACACCTTGGGCACAAAACAGTTCACAGTTGATTTTTGAC--------------TCTTTGTCCTTCACCTAGGT------GCTGTGTTAC---TCTCTCATCCTCCATTTATATTCACATCACCTATCTAAATA-------------ATACCCTTTATTTTCCAAGCATCATATTAA--CTACTAACAACTTTCCCTGGT--ATTTGAAATTTATGTTCATCCTAACCCATA---TTTGTCTTCAAACA---TTCCAAGTTCATA----TCTAA------------TACACAAAAATTTCT------TTCCAATAAGGGGCAA------TAGTTTTATTTCTTGAAAAGTTAGTCTAGAGCAAAATATAACAACCGTCTGTTCTGGA-------------------------GAACATA---AAATACTGTAA--------------------------GTGAATGATTGTTCATTTA-----------------TTAGTAAAAAAAAA--------ATACTCTCAGAGGATGC---ATCCCAAAATATTAGGA-----------CAAA------TGTGAAAATTTGAAGAACATACATG----------TACATGGAAAGAATGTT----TACTGTTTATTTG---AGGCTCTATTA--TAATTATTTACATATTAATCTACATACTCAATTCATTTCC-TTTAATTTCCTTCCAAAATGTAAAATAATCGACATGTGATTTTACAGCTTTAGCC----TCCCTACAAAGCC----TAGTAGCCCATGTTTATAGAACTTACGGGGCAGGTCCAAACTTCCATCCTCCAATGGCCAGGAGAGTTTTTAGCTCAGTGTTCCTC---AAAAAGTACAGAAAAAGCAAAATATCAAAACACTTGGCCTCCATTATATAACATATCTGTGCTTTTT---ATAAATATTTCTCATACTAGT---CATTTTTCTGACATAACATTATAGAA-----------GTTTTTCAATATTGAGTAATTCT
s HiC_scaffold_1 116653723 1285 - 233722169 ATTGTTACTGGGAAGAACAGACTGTGAACCTTCTCAGAATAAAGGGTATTCGTTTTTAC---ATCTGCACCAGTACAGTGAAATGATGCTTGTTATGAGAAGGGTTCCTATGGGTGCCAGAGTACTCTCAGTCCAAGTCCAGTCCATCAAACCCATACTGGCAGAGGAATAACTGAGGTAACTATAACTGAGGTAATGACAGTCTGGTGGTCCTCATAAGTGGAAACCACAGTAGAAAAATGAATGgagactgaaagaaagaaaggtaaggCTTTGATGTTCCCAACTCACTGGATTAAGAACAGTTCACTCCTCAATTTCAGCCTCAGAGCACTTCATCAGTATCCTTTGCCAAGGTTAAAGCATTCTActacttttctcttgtcctttctTTGTAACCAC--TACTCAGTCCAACAGTGGTGCCTCAGTATTCCCTATATTTTCC---CCTCCCCTCAATTTTTCTCCCAAATTTCCATTGTTGCTTTGAAGACCTGGCTAATTCAGGTCACTATGTTCTGTCTCCAAATAGTTTTCTAAGTTTATGTGCCTTTAAAAATGTCCTATTTGTGtataattttctgtttccttctgccAGAAGACAAATAGACCAAACTGATTTTCTGAGTTTGCACTCTGGAA-ATACTTTACAAAGAGATTGTTTTGGAAGCAGATAACCatccaggtgtagtggcacatatctgcatgctgtaatcccagcactcaagaggctgaggcaggaggattactgcaagttcaagaccaccctgagctacatagtgagttcaaggccagcctacactaccaagtgaaaccctgtctcaaaagaatgtGAAAGCAGATAATCAAACTTCTGTGGGTGAACTCTCAGAATACCCACTCCAATTTAGCTATATTAACTAAATTTTGCCCTACTTTGTACTGAGATATGATCTAGTAATTCATTatcttaacatttattta-atgTACTGCACATTACTATCTATCTTACATTGTGAATCTAAAGCAACAGAAA---------ACACATTGGGCCAATGTATTTGCAATGGCAAATGAGCAGGCTTTCTATTGAGAACTTATGGAGCAGTTCCAAAGTTCCAGACACCAATCACCAGGAGAGTTTTCAGTTGACTGTCCCTTTAAAATAAgtgattaaaaagagaaatttcaaaatccatgattccctttttaaaaaataatattgttttttaaCATTAAGCCTGCTCATATTTTTTAGTATCATCTTGATATAATACAATAGAGCATAGAACAATATTTCTCAGTgttgaaaactttt

a score=6008
s chr3           106297658 216 + 160039680 AAAAATTTTACTTTCTCTCACTACAGGATTCAATCATTTCCTACTGGAAGGACCATGGAGCAGCTTCTGAGAAGCTCATTGTGGGATTTCCAGCATATGGACATACCTTTATCCTGAGTGACCCTTCTAAGACTGGAATTGGTGCCCCTACTGTTAGTGCTGGC-CCACCAGGGACGTACACGCATGTACCCGGACTCCTGGCTTACTATGAGGTAA
s HiC_scaffold_1 116601950 216 - 233722169 AGAGGTTGTGTTTTTCCTCCCTACAGGCATATGCTATGAATTACTGGCGAAAGCTTGGGGCACCCTCAGAGAAGCTCATCATGGGGCTCCCCACATATGGACGTACCTTTCGCCTCGTCTCAGCTTCTAAGAACGG-GTTGCAGGCTGCAGCGATGGGACCAGCATCTCCAGGGAAGTACACCAAACAAGCTGGCTTCTTGGCTTATTATGAGGTGA

a score=4329
s chr3           106298680 127 + 160039680 AGATTTGCACATTTCTGAATGAAGGAGCCACTGAGGTCTGGGATGCCCCCCAGGAAGTACCCTATGCCTATCAGGGTAATGAGTGGGTTGGTTATGACAATGTCAGGAGCTTCAAGTTGAAGGTAAG
s HiC_scaffold_1 116603678 124 - 233722169 aGGTTTGCTCCTTTGT---CCAAAGAGCAAGAAAGCACTGGATTGATTATCAATATGTTCCATATGCCTACAAGGGGAATGAGTGGGTTGGCTATGATGATGCCACCAGCTTCAGTTACAAGGTGAG

a score=4798
s chr3           106298826 173 + 160039680 TGAGATTGCAGCCTGATTCCCAGGAAATAAGT----------GACTAAATGCTCTCTGTTTCAACAGGCTCAGTGGGTCAAGGACAACAATTTAGGAGGTGCCGTGGTCTGGCCCCTGGACATGGATGACTTCAGTGGTTCTTTCTGTCACCAGGGACGTTTCCCTCTGACATCTACTTTAAA
s HiC_scaffold_1 116606640 179 - 233722169 tgatattgtatccagtctGGAGGGAAATGAATATAGCATGTTGACAAACTGTT----ATTTTCACAGGCAATGTTTGTAAAGAGAGAACATTTTGGAGGTGCCATGGTGTGGACACTGGACATGGATGATGTCAAAGGCACTTTCTGTGGCACTGGCCCTTTCCCCCTGGTATACATCCTGAA

a score=17533
s chr3           106394181 1131 + 160039680 AATTCCCCTTAGAAAGAAAAA--TTCAAATCTTCTAGGAATAAAAAAAGGTATTTATTCCTGCTTTCCTTACATGCATCAGGATAGTAAAGAGATGTTTGTCCCTAGGAGGGCTTCCATAACAGCCAGGGTACTGCCAAGCCAAATTAAGTCCATCAAATCCATACTTCCGCAGGAAC----------TTTATGATTGAAGTAATGAAAGAATGGCGGTTCTCAGGAGTGGACACCATGGTGATAAAACTAAAGGA-ACCCAAAGAAATCATAATAATGCTTCAGTAATCTAAACACACTGAGATAAAGATATTTTATTCATTAATATCTGCCTCTGAGCCTTTCATCAGGA-CCTATCCCCAGATTAAG----TCT-CTGTGGTTCTCAGGGTATCCATGTACAATCTCTGCTT---------TTGGTGA------ACTCTCTAGTTATTTTATTGCTGCTGATTCTAATGCTCTATGTATTGAATGCAGCTGTCTTTGTTTTGA--ATTCAACTAA--CATATTAGCATGTTTTGTCTTCAACTAG-ATCCCAAATTCATGTACTCTCAAAGAAGTCTTATTGGTTATGCATATACATTTTCTTTCCTTTCT------------------------------------------TTTGGAAACAATGAACAAAAGTAT---------ACCAGTTGTTCATCTAG----------------CTTTGTGTT---------------------------------------------------------CTGAGTTACTTGA-------------------------------------------AAAAGGATGTCTGTTATGAAATAGGTAACTAAATATTAGGGGATGAAGTGCCAGAATATTAATCCAAACATTTAAACATATGAAGTACACTCTAGTCTTTCCAGCGTCTTTTAGTTAGTATTGAAGTTCCATTGTAGACATTTATTTAGTTAATGTATTCACTTAGTAGA-TACTCTTAATACTCTATTTAAAACTGTGTAGGAAAATGAAACAGAAATCATGCTACTCTAGATTGTCTTCTATAGAATGTGAATGAAAAAATCTCTCTGGAGAGGACTTACGAGCCATCTCCGAAGTTCCAGCAACCAATAGACAGGAGTGTTTTCAGCTTGTTGTTTCTTTAAAGCAAAAG----AAAAGAGAAATTTCAAATTTCATGGGTCCTTCTATTTGAAATGGAAATG-TTTGTGGTATTGGGCCTGTTCTTATGACTTAATCTTGTCTTCATATTATACAGTAAACTTTTGAACAATTTTTC-CATTAATGAAA--TTTTATT
s HiC_scaffold_1 116653722 1289 - 233722169 AATTGTTACTGGGAAGAACAGACTGTGAACCTTCTCAGAATAAAG---GGTATTCGTTTTTAC-------ATCTGCACCAGTACAGTGAAATGATGCTTGTTATGAGAAGGGTTCCTATGGGTGCCAGAGTACTCTCAGTCCAAGTCCAGTCCATCAAACCCATACTGGCAGAGGAATAACTGAGGTAACTATAACTGAGGTAATGACAGTCTGGTGGTCCTCATAAGTGGAAACCACAGTAGAAAAATGAATGgagactgaaagaaagaaaggtaaggCTTTGATGTTCCCAACTCACTGGATTAAGAACAGTTCACTCCTCAATTTCAGCCTCAGAGCACTTCATCAGTATCCTTTGCCAAGGTTAAAGCATTCTActacttttctcttgtcctttctTTGTAACCACTACTCAGTCCAACAGTGGTGCCTCAGTATTCCCTATATTTTCCCCTCCCCTCAATTTTTCTCCCAAATTT-----------CCATTGTTGCTTTGAAGACCTGGCTAATTCAGGTCACTATGTTCTGTCTCCAAATAGTTTTCTAAGTTTATGTGCCTTTAAAAATGTCCTATT-----TGTGtataattttctgtttccttctgccAGAAGACAAATAGACCAAACTGATTTTCTGAGTTTGCACTCTGGAAATACTTTACAAAGAGATTGTTTTGGAAGCAGATAACCatccaggtgtagtggcacatatctgcatgctgtaatcccagcactcaagaggctgaggcaggaggattactgcaagttcaagaccaccctgagctacatagtgagttcaaggccagcctacactaccaagtgaaaccctgtctcaaaagaatgt------GAAAGCAGATAATCAAACTTCTGTGGGTGAACTCTCAGAATACCCACTCCA--ATTTAGCTATATTAACTAAATTTTGCCC--------------TACTTTGTACTGAGATATGATC-TAGTAATTCATTatcttaa--catttatttaatgTACTGCACATTACTATCTATCTTACATTGTGAATCTAAA-GCAACAGAAAACACATTGGGCCAATGTATTTGCAATGGCAAATGAGC-----AGGCTTTCTATTGAGAACTTATGGAGCAGTTCCAAAGTTCCAGACACCAATCACCAGGAGAGTTTTCAGTTGACTGTCCCTTTAAAATAAgtgattaaaaagagaaatttcaaaatccatgattccctttttaaaaaataatattgttttttaaCATTAAGCCTGCTCATATTTTTTAGTATCATCTTGATATAATACAATAGAGCATAGAACAATATTTCTCAGTgttgaaaacttttatt

a score=14901
s chr3           106404092 826 + 160039680 TTAAGAAGCATTGGTATGTGGTAACTATTGAC---------ACTAAATTACATACCT-TCTCTTTCTCTTACCTCTTTTTTAAGTCATTAAAACCTTTGTAGTCATCCAATTCTTTCCTTTTGGTCATGGTGAAGTTATTTTCCCAAATCCCAGCAAAAGAATAGATTAGGTGAGTACAGAGGCAAGGGTCAATGTCTTCATGCTTTATATCTCTCACATCTGGCTGATGCTGAGGCCAGTTGTTGAAGTAACACATCAGCTGGTAGGCAGAGCCTGTGAGAGGTGAGGGTCAAGCATGACAGCAATTTG--TTGGTGCTAACGACCTGTGCTCATAGTTTGACCCT-GCTTCCTTCCTTTCCTGTGCTTCAAATGACTGATCTCTGTTTAGAAGTGATTAGTGTGAACACTCTCAAAGATGAGCCC---------GTCTTGAGAACAGTACCTGACTTAAAGTGCCTTATGTTCAGTTTTGGAAAATACAATGGGAGAGTTTGGTTTACCTAGAAG-----GAAAAACAGGGGTCCAACTGTCATCTGGGTCTAGGTAGTCATTAGTTTATAGCTCTCCAGTGGTGATGCTATACTGCATAGTAGTGGGAACAAAACTAAAATAGTCAAC-TCTCTACAAAGTGAA--------------------------------------------------------------CCATTCTC-----------------------CTTTCCAAGTATAAAT-------------TATTTCCTGGTAAGTTTTTTTCCaaaaataaatat-tataatataatttaataataGTCTATATT-AAGCAGAATAGTGGACTATAAGTAATTTATGGAGATCTGAGG----------------CTTTACTAATAATAAAGCAGGTAGTCAATGACTTACCCATTTGAGCATTCAGAAGGAGGTTGAGACCTGGAAACAGA
s HiC_scaffold_1 116679174 927 - 233722169 ttaagaatctcTGATGTTTGGAAACTCCTGACCTAGAGGACACCAAATTAGATATCTGCCTTCTTCTTGTACTTGTTTTTTA-GTCATTGAAAGTTTGATAG--AGTCATGTCATTCCATTTAATAGCAGTAATCTCATTTTTCCTCATCTCAGTAAAGGAATAGATTAGATGAATACCCAGGAAAGGGTCAATGTCCTCA-GTTTTGAAGCTCCCCTGGCCTGCTTTTACTGGGGCCAGTTCATGAAG-------TCAGCTGATATGCAGAGCCTGCGTGA---------TAAGAAGGACAATGCCCTGATTTAGTGGCAGTGATCTGTGCTGAGAGTTTGCCCTTAGTTTGCTTCCTTCCTTGTGCTTCTAATGCCAAACTTCTAC---------ATGAATGTGAACACTCTTGGCCATGGGACCAAAGTTTCAACTTAGAAATGAATTGTTGACTTGAAAT--------TTTAACTTTGACAGACTCATTTTGGGATCTTGGATAGCTTAGGAGCTTTCAAAGAAAAGACGCTCAACAGTTTTATAAAGTTCAGTGAGTGCT-GTTTGTAA--CTCAGGTAGTCAGGCTGAAAGGTGCGGCAGTGATAATCAGTCTAAAACTGTAGATGTCCCTAATGAGTCAAACCCATAGCTTTCCTTGCTGGgatttttctgtctctgcctccttgtttctctacctctgtctctgtcctctttgtctgtctatgtctctgtcactttctatgtatatatgtaaacatctgtgtatatatgtgcacatgtatatgtatatgtatatatgtaaagtATACTCAAGTCATA---TATATTAAAGCAGACAATTGCATTATGAATAATTCATAGGTACTTCAGGGTATGATAGAAAAAGTTTTTGTCAATAATAAACCTTGGAGTCAATGAACTACCTAGCTGAGCATTCAGGAGAAGGAACAgatctagagagaaa

a score=12552
s chr3           106461934 499 + 160039680 CAGCATGCAGCTCAAAGGCAGCATGGGATGCAGTTTGTTGATCATTCATAGTCCTTCTCACCTCTCCATCTCTGTCTTCAGAAAGATTCAAGTGAGGA----CTCACTTCTGGCGCAAACTGTTCCATCAGATGCAAAGACCGGAAGTCTCAAAAAGACCTTGAGGAG-CAGACAACTTCCTCTGGTTAGTGCTGTGGTGAGCATTCCACCTCCTTCTCTAAAGCAAGCTACTAAATAACCTTGGCCCCCACTTGGTGCTC-----AGCCTCTTGCAGCAAGTC----------------------------------TCTACTTTCTTGACAAAAGGAGACTGGAAACTAAGACCTC-TACAAAGCATAGCAATTTGCATTTGGTTTCCTCTGAGCATGGCAGACCAACACTGCACACCCACTCCCTATGCCTTTTTGTAAAAGCTGCATGTTCACATA---------CACCCTGGGAACTTGGTGCTTGTGTTTTCTCACACTGCCTGCAGCTTGATTGCTACTCAGATCTCACATCCTTCATGTGGTCCA
s HiC_scaffold_1 116777556 517 - 233722169 CAGTGTGCTGCTTGAAG-TGGCCTGGGAAGCTGTTGGTTGGTAGTTCCCAGGCTCTCACATCTCCCCGTATCTGTCTCTGAGAACTCTAAGGTAGAGAGAGGCTCCCCTTCCTTGCAAACAGGTTCATCAGATGCAGTGGCAGGAAACCTCACAAAGACATTGGGGAAACAGTCAGTTTCCTCTGGTTAGAGCTGTGGTGCTAGTTCCACTGCCTTCCCCAGAACAAAATGATAAACAACTTTGGCCCCACCTTCTTCCCCTAAAATGCCTGCTGCAACCAGGCCTATAGGGCTAGCTAAGCCAATAGAGACCTTccatttaatttcctgataaGAAAGGAACTGATGCGTGGGCCTCATACAGTAAGAACCAATTTGCATTTAGTTTCCCTTGAg---ggcaaaata--------------------------------aaaagttttatgatTGCGTAGTCCTCCTTCATTATGGAAAGTTGGTACTCAGAGCTTTTCACATAATCCCCAATATGATTGTTGCTCAGACCTCATATCCCTAAAGTGTTCTA

a score=168787
s chr3           106481281 7862 + 160039680 [encoded data, 8771 characters]
s HiC_scaffold_1 116792278 8129 - 233722169 [encoded data, 8771 characters]

a score=152212
s chr3           106490182 7373 + 160039680 [encoded data, 8379 characters]
s HiC_scaffold_1 116800412 7579 - 233722169 [encoded data, 8379 characters]

a score=300645
s chr3           106498499 22105 + 160039680 [encoded data, 25278 characters]
s HiC_scaffold_1 116808123 21749 - 233722169 [encoded data, 25278 characters]

a score=43129
s chr3           106526647 5604 + 160039680 [encoded data, 6230 characters]
s HiC_scaffold_1 116830979 5115 - 233722169 [encoded data, 6230 characters]

a score=24938
s chr3           106532520 1808 + 160039680 TCATTTA------TAATGTTTTTTTTTTCTAAAAATACACTCAAGTATTATTTGAAAAAGTCGCAACATACTACAAATACAGACATATCACCTATACTTCAACTGTGCTAACAAAAACCACTGTCAGCACTTTTTCTTGTAGCATTTT--TTTTACATTtgtacaacagggtatttta---atatgtgtacagc----------ctgtgaattaaaaaattaatcta--------tgca-------tcactgttgtggtggaacacctaaaatctat--ccttagtaaatt---------------------agcaaca--------------------------------------------------------------cacaacacagtacttact----------attagctgtaagcctcaggttg----------------------taTGCCAC-------TTCT----------------CCAGGCTTGATCCCA-TCAGTCTTCATCCAGGCCCTTACTGCATATTTATAATTCAAGTATATAATGTACTCCTAACTATCTATACTTAAGATTCACTTAAATACAAGGACATGGACT------ACCAGTCATCCACTATTGTACTTTTATCTAGAACTATGAGATTTGTGAAAATGACAATTATACTCTGAGATTTTAAAAAGAAAAGGTCCTggaatggagatggtagtagaagtagcaagcttgcctagccaagcatatgcaaggccctgggtatgaatcccaagtactagaaaaaataaaaataaaaataaa-ataaataaataaaaataaaacaaaccaagtaattAAGTTTCCCAATAATGCCAGCAATGAACAAGCATTAACCAGAACCATGAGTCTCAAAAAAACCCCACTAAAATTTAATATAAATATCATTTGCTTGAG-AACTAAAT-------TTATTTATTGCAATATTGATTATCATATTGTT-TCTATCAGTTAATAATTCTCAGCATTAAAAAGCAACAATA----CCTGTCGATAGTGAGTCACAGCCATGATCAAAAAGTTCTCCCAGAGGAGAGCTACTGTTAGTTCTTCTGGCCTGTTTCCCATCTATGGCATCCAGAGACTGGTAAATGAAAAGGCCACAAGCACAGGCAATATAAGCCCACAGAGGTGCCTGCAAAAAAAGATAACAGCAACAACATTCGAATAGTTTCATTATTAGATTTGGCCAAATGTTTCTTTAATATCAGATATTTAGTCTTCATTTCAATTACATTTACTTGgtgtgtatgagtgtgtgcatgctcctatgggcatgcacagaaaacatgtggaggtcaaaggttctcttcctccactatgtgagtccaggaattaactcaggtcttcagaccaagaggcaactgcttttacccaatgagcccatcttgccagccTGATTGTCTCCTCATTCTCTATGTAAGTATTCTTGGTTGAAAGCTGTGGAAGA-----GATGACTGAACTACTAAATAACAAAGAACTTACTGATGCCTGAAGTAACTGGGATTGTTAGCAGACATAAATTCCCTGTTTTTAATGGTGCTCAGGAAGGTCTCCTTTAAGTACAAAATATCccat-gtctctgaattcccttatgtctctgggttccctaaccagaaatataaatttctaaagtacaaaaa-------tctgcatctgtaccaaatacagacagacattt----------ttcttactttataaaataataccacacatagctacttagcagtatgtacactgtattcagcattacaagtaatccagagattctttacagaatatagaagggtacacgtggattatatgc--ctgctagacaattttagaaaaactacttaagtatctgcagactt--cgatttctgtgtggaagctgtagaatcaatcctttacaaatatcaaaggataaccgCACTTAGCAGGAATTTTTCAGAACTCTCATGAGAGACTACACTG--TCTCCTCTAAATTTCTcccagcat
s HiC_scaffold_1 116836806 1657 - 233722169 tcatttagtttcttaatctctttttgcTCTAAACACATACTAGAATATTATATTAAAACTTC-CAACATGGTACAAA-AAAGATATATC-CCTACACTCTACCTATAGCAAT-----CCACTGAA-----------TCCTAGCATTTTACTGTTACATATATTTAACATGCTATTTGATATATAGGTATATGGTGACATGATTACTATAGTTAAGCAAATTAATTTACCATCTTTTATAGTTACTTTCTCTACTGTGTAGGAATGCTTAAAGCCTACTCCCTTAGCAAATTTTTCCATATACAAAACTGTTAAGCAGAATCCTGTTTACctcttgttttgtgtgtttttttgtttgttttattttttttgagatatagtctcactatgtagagtTTAGTCTGGCtctgaattcactatatagcccaggctggccttgaaactatagtgatccttctgcctcaggagGATTCTAAATGTTGGTATTATACCTAGATTCATCCTGGTCTTTTTTTATCTAAGCCCACATTATATATTTGTAATCTAAgtctaaaatgtaattttaaatgtctat--ttAAGATCCACTTAAATACA--GACTTTAACTTACCAAACCAGTCTTTTACTACTGTATTGTTACACAT----------TTTTTGACAATGAAAatctta-----agattttaaaaa----------ttggttaaaAGCAATAGTTAAggt---------------------------------------------------------------------taaaaataagtataaatgaaTTTAATTGCCACA---------------TTTCCCAATGCTGAAAATAATGAACAACTATTAACCAAATTTAT-AGtcttaaaata----tactaaaatgtaATACAAA-ATCACTTATTTTAGTAACTACATAAACCTCTTCTATATCGTAACACTGTTTATCACACTGTTGTTTATCAGTTAATAACGTTAACATTAAAAAAGCAGCAATAAGTACCTGTTGATAGCGAATCACAGCCATGATCAAAAAGTTCTCCTAAAGGAGAACTACTATTGGTTCTTCTTGCTTGTTTCCCATCTATAGCATCCAAAGACTGATAAATGAAAAGGCCACATGCACAAGCAATATATGCCCAGAGAGGTGCCTgcgaaataaaataagaaaggca------------------------------------------------------------------------------------GGTATAT----------------------------------------TGTAGAATT-----------------------------------ATTAGCT----------------------ACTGTGTCTGGATAATG---------TGCTACACATATTTTATGCTCATTCTCTGGAGACGTACAGCTAATTAGAAGCTATAGAAGACTTCCCATTACAGAAATGCCACATAATGAAGAACTTA-------CTGAAAGAATTAGGATTGTTAGGAGAAATAACTTCTCAGCCTTTGGAAATATTCAAGGATATCTT-----------GGATAACTTACAGTC-----AACTCTTCACATCCCTGGGATTCTACTCCATAGATTTACCCAACTGaggctttaaaatatttagtatgtATCTATACTGAATATGTACAAACTCTTACTTTTGTCATTATTCCTTAACAATATAGCATAATGAGTACTTCCAAagc---atttatatttcattaag---tATAAGAAATCTACTGATGAGTTAAAGTATAAGGAAGGATGTATGCAGGTTACATGCAAATATTATACCATTTTATAAAAGAGACTTAAATATCTGCAAATTTTACGATC----TGCAAGAGTCCTACAACTAATTCCTTGT-----CCAAATGGTGACTGTAATTCACAGAAATCCTACA-----------AGAGACTAGGGTAACTTTCTACAAGATTCTTCTCAGTGT

a score=48178
s chr3           106539078 1781 + 160039680 TTTAAAATAGTTAATATAGCTATGAGAATATTTT-CTCTTACATAAAATGACCTAAGAATTCCAATTACATTGTTTCTGGACTATAATAAAC-------------TTTCATATTGTTACTCTTACCTGCTCTGTAGCTGTAGGGCAGTAGAAGACTAACAAAATAGTTGTACAGATATTTATTGATAGTCCAATGATGGTGATGAGATTTGGGGCAATCCATGAGGGTACTCTTCCAACTAGCCATTCCCAGTATCCTTGCATTAAGGGCTCGAGAAGGGACCGTCCAGCACTCTGATACCTGTGTTCTTCTAGCCGTTTTAACTGGTGTCTTGACAGTGGTGGTGTCGGTAACTGAAACAATTTATTTAATACACACCCTGTAGTACTCATATGCCCAAAGCCCACAGGGGACTCTGGGTGAGAATCTCCACATCGTTTCCTTGTTGACCGATGCCCACTCATGGAGCTTGGTTTTCTTCTACTTGGAGACAATTATTTATCTTGTTTGGTAGCCTTCTGTGGC---TATTTACCTGGGGGCTGGAAGG--------AGATAC-----ATTACCAGTAAATTAAAATTAAAAAGTCAGC---CTAACAGAACTAACATCAAACAGGATGCTAATGTAGGGATCTAATTTTA-TTCTAGCTCTTACTAAGAAATGTATAAACTT-CTTTTAAGCGAA-GTTATAGGACTTTAATAGTCATACACTTCCATAACACAACTTACCTGATTCTGCAGCTCACATTTCCTCTTACACTGCTTCTAGTTAACAATGAGATCAAATGTTGGAAACAAGCTAGTCACTTTATACACAGGGGCTGACACATATATACATGTGTATAAAAATGAGGTGAT------AACTTAGTAA-------ATTAATATTAAATGAATAACTTAGTTAAAATGATCTTACATGCATCTGCACCTGTGTGTGTTTAtgaggattagacccagggtcttgtacctgtaagcaagtgttgtaactaccactaaattacaacatcatcctcTCAAACTACATTTTTCTTTGATCaatatagataatatttattaagcac-----ctataatgtgc-aaactaagaaccctttataaattagttaattttatcctcataataattctag-----aagtattatgcgagtatgtatgctaattatcctaattttt-----cagaaaaaaaggaaactaaggca----gagactagtt-acattttcaaatca-atagatgttaagtgATTGTCAAACAAACATAAGAATTTCCATTAAAGCTAAATCCAAAGATAAAACCTGTATTGGTGGAAAGGGTTATGGATGGTATTCCAG--GTGATACTGTA-CACAGAAAGAAAAAGTTAGACGAACAGCACTATATACACATGTATCAGCA-GGTGACCTGATGACGTCAAATAATAAGAAAACAAAGGAAAGGAGACTGAGTGACAGCCATAAGGACCTTGGAGTAC-TTATTCCCTGAAGTG-CTGCACCTGAATCAGAAAAGACTAGACACAACATAATTATTATAATTAAGCATACAAGAAAATAATTGTGAGTCTTTTCAATATAAATAAGGACAGTTATATATTTATTAATTACAATGGACAAAATAGAAAGAACAATTACAAATTAGCTCATGATATCAATGGTTTTAAGTGACGAGGGCTTATATT-AGGAACAAAAAATGTTAGTACAAATGACAGTCAAGTCAACTACTAATTTCT-----ATTTAGAAGGAAGAATCAACAGAAAATTCTTAGAGATTGAATGTAAGAGGTGGAAGAGAAGAAAACAGCAGCTAGACCACTTATGTCTAAAGAAG-AAGCTGGGAAGTT
s HiC_scaffold_1 116843514 1543 - 233722169 ttaaaaatagctGACA--GCTGTCACATTGTCTTACCTTTAATTAAAATGACCCAAAAATCCCACCTGTAATGTTTCtggtagaaaataaatattgttacAACCGTTTAAGAAAGTCCCTCTTACCTGTTCTGTAGCTGTGGGGCAGTAGAAGACTAATAAAATAGTTGTACAGATGTTTATCAATAGTCCAATGATAGTGATGAGATTTGGGGCAATCCAGGAGGGCACTCTCCCAACTAACCATTCCCAATAACCCTGCATTAAAGGCTCAAGCAGGGACCGTCCAGCACTCTGGTATCTGTGTTCTTCTAGTCGTTTTAGCTGGTGTCTTGACAATGGTGGTGTAGGTAACTGAAACAATTTACTTAATACACATCCTGTAGTACTCATATGCCCGAAGCCCATGGAGGACTCCGGATGAAAATCTCCACATCGTTTCCTTGTTGACCGATGCCCACTCATGGATCTTGGCTTTCTTTAATTTGGAAAGAGCAACTTATCCTGTTTTGTAGATTTTTGTGGCTAGTATTTATCtggaaataaaaagacatttgtCAGTTACTACTTAGTatcagtacattaaa---aaaaattcaatctgCTAATAGAA-TAATACTAAACAGGAATTAAAACTAGGGGCCAAATTTTGCTTCTGGTTCGTGTTGA-AGGTGTATAACCTCACCTAAAAGTGAACATTAAGAGATTTTAATAGTCATAGTTCTTGTTACCTTAGTTTGTCTAATCTTAAAGTTCATACTTCTTTCT--ACTACTCTcagtt------------------------------------------------------------tatacatatatatgaaaat----tgaTGCTCCAAGGCTAGCAGTTTTACTATTAATATCAGAAGAATGACTCAGTTGAAATGGTTCT-------------------------------------------------------------------------TTCAACTAA-------------------AACCtagattttt-----aatgaaatagctaatatttataaagcattttcATTATAGTATTTAAAACTAAGTACTTTTTGTATGTAAACTAACTTAATTCTCATGATTAAGTTAATTAATAGGTACTat--------------taattatcttcatttttttttacagaaaaa---gaaactaaggcaAAGTGAGGCTAATTAACCTGTCCAAATCACACATCTTATACATGGTGTTAAGACAAATCCAAG-ATTTCTGTCTAAGCTAAGTTGAAAAATGAAACT--TATTGGTGAAAGAGGATATAGACCATATTCCAGTTGGGAAATAGcagcaaaagaagtaaaaagtag-------------------TATTTCTCAGTATTGTGACCTAATGATATGGggtaataaaaaaacaaagataaatagattaaataattactactaa-----taaaatactttaattcctgaagtatttttatttggtttagaAAAGAT--------------------------AACATAC---------------------TTTACTATAACTAAGGAAA---------------------------------------------------TAGCACATGATTTCAATAGTTTTAAGTGGTGATGGTCTAGAGTAAGGtggtaaaaatggaaatatagaaGACAGTCAAGTTTATAGATAATTTCTTAGGAATTAACTTGGAGAAATCAGCAGAAAGAACCTAGGTATTAAATATGAAAAGTG----------AAGCAGCAGCAGAAAAAAAAGAGTCTAATGGAGtatgctgggaagct

a score=81188
s chr3           106542184 6896 + 160039680 [encoded data, 7623 characters]
s HiC_scaffold_1 116845601 6580 - 233722169 [encoded data, 7623 characters]

a score=27403
s chr3           106554957 1122 + 160039680 tatgtatgAAATGATAAGATAGAAAGCAAGTTTCTGGCCATGGCCTCTAAATGAGTCTTAGTTC-------TAAAAAGTGAAGCGGTGA-----TACAGGGGTAGTGTGGGGAGGATGCTCAGAGGG---------TAAGGTTCCAAGTGCTGGCT---GGGAGTGGGTGCCTAACACAGAGTGGAAAAA-CTTACCCGTTGTTGTTTCTCATTTGCTTTCTTTGCTTCAGAAGACCTGTCTGAAATGTGGTGGTTTCAGCAAGGCCTCAGTTTTCTTCCGTCGGCCCTTGTAATTTGGACATTTGCTACCTTCATATTCTCATATATCACTGCAATAACACTCCACCATGTTGACCCTGCATTGCCTTATATCAGGTCAGTGAAGTATATTGATCATATAAACGTAACCCCCACCTTCAGTGCTGGGGACTGAACACAGGCCCAGGTTAAGGGCTACTTTCCCCAGTTAGTCTTTAGGATTGATTCATAGTTTACATCAACTCTGGCATTTCAATTTT---------CATTTGAAAATTCAAGCTTTTAGACTGCTATCATAGCA--AAGGAAATATAAAATAGAACTTGCAGTTGATTCCTTCAATGAAATAGAAAAATCTGGGGACTGTCAGGTAAGAATCAGTTAG--------TTAATAGGTTCTAAACTTTTAGTGTCTTATCTTCTAAATAAGTGCTTGAGCTTGCCTCAGAACCTGGAATTAGAATTAAT-TTTCTTGTAAATTAAAAAAAAATGCTGCAAACAATAGTAATGTTAGAAAAACATAGTAGTATTGGCAAATGTTATTAA-TGtattatgtaacaaggtaatgttctaagttttcttcatgccgtaggtaattaaatccttgcatcatccatgtgtagagaaat--------ttagcctcatttAAGTAGTCAGGATCTGTAgtaatctttctgtt-gctgtgatagatatctaaaatgtatatatccttatacattgactgttctggctcacgcttgtagtggtttcagatcatgattacttggccctattgccttgagcctgggatgaagca-tacaggatggcagaagtacata---gagaacaaagc--attcacctcgtgacctgaaagcaaaagcaagcaaggaggaggccagggatt-tgtaattccctttaagtgtact
s HiC_scaffold_1 116857206 1051 - 233722169 TATATGTAGCATGATGGGACAGCAAGTCAGCTTTTGGCTGTAGCCAGTAGGTATATCTTGGTTCCATTTactaaaaaaagcaaaagagaatggtTGCTGGGATGTTATGAGGGAGACTTTCAGAAGGGGAATAATTTAAGATGATAAATACCAGGTTGTGGGTATGGATGG-TAAAGTAGAATGGAAAAAACTTACGaattactttttctaatttttttt-------tcagaagatcTGCTTGAAATGTGGT---TTCAGCAAGGTCTCAGTTTCCTTCCTATAGCCCTTGTTATTTGGACAGCTGCTGCTTTCACGTTTTCATACATTACTGCAGTGACACTCCACCATGTTGACCCTGCTTTGCCTTATATCAGGTGAGTGATACATATTCTTTGTATA-------------------------GGAAAAGCATAT--------------------------------GTCTT--------ATTCATAGTTTACATAGTTTAAAGC----CAATGTTTTGTGTGAccattttgtaattaaaatttttacattgaaGTTATAAGAATAAAGGAATGTAAAATGAAACTTGTGCTTAACTCTAT--GTGGTACAG-AAAATGTGGAGACAGCAGGACAAGATACAGTTAGTGGCTTGATTAATGAATTGTCACCTTTTAGTGCCTTGTCTTCCAAATAAGTGTTCAGAGTTATCTTAGAACGTGTAATTGAAATTATTCTCTCCTTAGAATT----AAAAATGCTACAAACAATAGTAGTAAT-GGAAAACATAGTAAT------GAGTAACATTAAGTTTATAATGTAG-AAGATAATGTTCTAAGCATTCTTCATGTCTTAGA-AATGGAATCTTTGCAGCATTTATATGAGGAGAAATGGGAACTGTTATCCTAATTTGAGAGAGGAAGGT-----GTCACCTTGCCATTAGTTGAGATAATCA------------------------------TGGTTTGACTCATGATTTTGAAGGTTTTTGTATATGATCAGTTGGCCCAGTTACTGCTGGCCTGTGGTGAAGCAGTGAATCATAGTGG--GTACATATAGGAGAGCAGAGCTGCTTTACTTTATGGTTTAGGAGCAAAAGAGGTTGAGAAGGGGGCAGAGGGTTACATTATCCCTTTCAAGGGAATT

a score=16718
s chr3           106561323 918 + 160039680 AATGGTATTTGGTACATATTTTT---AATGATCAATTGATGGACAGGTATTAATTGAAGTACAGGCAGTCACAGCGGGTACAAAGACACAAGAGCTATGAATGGGTCAGTGCTGCTTACAGAATATTCTGGTGAAGTTGATACACTGATATTATTATGGACTTTATTTTGGGTAAATGCACAGCATACTGTTAGCAAATCAAGGATAATCTCTTTTAAGTTAGTTTTT---GTTGATTTCT-----GAGGAAATGAAAAGATCTGATATGACA----AGAAAGAGGTAGGCAAATATTTATAAACTCAAATTATGTtctcttgctcgctctctctct------------------ctttctctctctctctctTAAAGAATAAAGGGCTTTAAAGTAATTCCTGTTATGAT----------AGGGTATCTGGTGTAAGAACCCTATATACTTTCTCTTTGTCTTTCAGCGACACAGGGACAATACCTCCTGAAAGATGCCTCTTTGGAGTAATGCTAAATATCGCTGCAGTTTTAGGTAAGTAATAGAA----TG--AAGAGTCAAATTGCTGA----TTTCTTCTTTAAAT---ACTGTATCACTACTTATTTTCTAGTTAAACTTGAGAATATGTTGTTATTAAATTATTGATTATAA-TATGTTC-------------------------CTAAAAGAAGAAAAGGAAAAAGAAAGAAAGAAAACTCTTGGTTATATTGCTGCCTTCCAAGGGGGCA-------CAGTGGGGAGAAGCTCAAG---TAGAAATGCCATTTATAGAA-------------------ATACACTTTGAAGAAATATTTTTATGGCTATAATAGACTTCTTATCTAAACCTAAGTTGCAAGGTCA---------ACCAAACATTCCTTGAAACCTTAGGTAGATTTCTTAAGCAATTAAT-ATGATATCACAACTTGAAGCTAAAACTTACTACAACTAAATTCTTTCATTATAAATAGTTTAAAAGTTTAAGAGTAGAAATGGAATTG
s HiC_scaffold_1 116862107 976 - 233722169 AATAGtgcttgataaatattttcttaattgatCAATAAATAATCAGGTATTAATT----TAGAGGTGGAGTTAACAGGTTCAGAAAGGCAGAT----TGAAGGGAATCatgatatttatgaaatattctagagagacagaTAAATACATACGATT--------TGTTGCTGGGAAGTCAATAATACAGTCTTAATATATCAgggatagatttttaaaaaataaatttttatgttgatttttattatgtaggtaggaaaaaatcttaaaagatatcagaaaatgaaataggCAAATATTTATAAACTCAAATTA---------GCCAATTGTCTTTACAAAAATGATGTAATAGAACTTAGTAGCTTT-----TTATAAGATAAAGGA-TTCAAAATGACTTCTATTACTGCTTACTCCTTAGAAGAATCTAATATAAAAAGTCCAAgtactttgtctttttctttcagtgacaCTGGAACAGTGGCTCCAGAAAAGTGCTTATTTGGGGCAATGTTAAATATTGCTGCATTTTTATGTAAGTATTAAAAGTAGTGATAACAAACAAATAGGTAAATTTTTTCTTCGTTAAACAGAATTGTGTTAATTATTATCTAGTATTTAAAGTTGTGCAAATATAGTCACTAAGTTATGTATTAtagttatgttcttttttttttttttttttttttttttttatatcggtaccggggatcg----------aactcacgactgca----cgcttgcaaggcaggcacttatgccgctgagctaaatctccagccccggttatgttctttttaaaagaaaaaaattatggaacTGATAAACCTTTAAGAAAGAGCTGTAGGGCT------GAGTACTCATTCAAATAGAAGTTGTAAGCACAATATTAAGCACCAAATATTCCTTGAGGCATTAAGTTGATGTCGTAAGCTGTTAGTGGTGAGGCAAAAACTGGATGC---AACTGACCCCAATTAAATTGC---------AttagtttagaagtttaagaataGAGAtgatgttg

a score=24689
s chr3           106565549 1022 + 160039680 TTTGTAATT-GACTGCTGTATGTGCT--AGCCTACT-GTGGTAACATGAAATAAAACAACGCAAGAACGAGG-AGGTAAGATTTTGTTG-GTCTTTCCTATTGGCC-----------CATCCAGATTCTACTGTTGACTTTGATGCTGATCCTAAAAATATTGTGGGTTTATTCTAATAAAAGTATCATGAGAGCTTTCTTCAGAAGACATCAAAATTATTTTGTAAGTTTTATACTAAGTAGTTGTAGAAATGAGAATCATGGAAAGTAAGTGGCTTACTCTGCCAAACAGGGATTCAAGTAGTTCTGTGGTGGGACCGTAAAACAATTCTTTAAAATCTATAGGtttttttttttattttgttctttttttttttttttGCATTCAACATTAATGTTAAAAAG-ACAGTTTGTGTTTCTGGGTAGTGACTGACCTTTGTGAAC---ACTTCACAGACAGGTTATTCTTGTGGTTACTCATTACTTCGTTGTTTTGTCAAATTCTCTCTTCCCAGGCATTGCTACCATGTATGTTCGTTACAAGCAAGTTCATGCACTGAACCCTGAAGAGAACCTTATCATCAAATTAAACAAGGCTGGCCTTGTACTTGGGATACTGAGTTGTTTAGGACTTTCCCTTGTGGCAAATTTCCAGGTTTGTTTTTTAACCCAGTGAAGGTATCTGTCTGCAATGTTTCGGTAT-------------------------------------------------------------------------------CTGTAG-------AAAAGTAAGTAGA-AAGCTGAGGTCCCCAGTCACATGCAGATCCTGTCTCTGCAGCCT------GCAGAACTCAGCTG------TATCATCTGAGCCATATGGAAACAGCTGCGTT----------------------TACTATTAGAAAAATTCATATTTGGTGATCTAAATAAACATAAATCATAAGAAGTGTTTCTCAGATACTCAGAACAGGTACTTACAGACTTCATTATATACTTAATTGGAGGTTACTTCAAGATCAGAC--AGAACTGATATGCAGAATAAGTAATAGATTGTAG--ATCTAAAC-----TTTATTTTGTTTGTTATATTCCTGATGAATCATAATTATTTATGTT---GTGTTCTTGTTTG
s HiC_scaffold_1 116863891 1109 - 233722169 TTTATAATTTGACTGCTACATTTGATTGAGCCAAATAgtaataatttgaaataaaattatatgaaagtGAGGCAAGTAAGTttttggagctttttttttttttgcctatgcTCATTTCATCCAGATTCTGGAATTAACCTTGATGCTAatgtaaaaaagatt-----tttat----ataacTCTGTGAT---------TTTCAGAAGCCATGAAACTTACCTCtaaaatattatactaaatgttTTTATATGTGAGATTAATGGAAGGCAAATAATTTGCTCAGGCTCACAGAAATTCCAGTAAGTTAAAGACACAaccttaa--taattttttaaaattga---------------attttgtgtgttttgtgtgttctC-----CTAGATTAactttgaaagggaaaaaatatatttctacagA---AGTGACCTTTGTGAACTCGACTTTG--GAAATTTTATTACT-TGGTTATTTATTATATTGTTGTTTG---------TCTATTCTCAGGCCTTGCTACCATTTATGTTCGTTATAAGCAAGTTCATGCCCTGAATCCTGAAGAGAACCTTATCATCAAATTAAAcaaggctggccttgtacttggAATACTGAGTTGTTTAGGAGCTTCTCTTGTGGCAAATTTCCAGGTTTGTGTTTTAGCCCAGCATAGACATTTTCCTGAAATACATAAATGTACGTATTgttgtgggccagggatttagctcagtggtgtaagtgctcacctggcaagtgcaagatcgcgagttcaatcccctgtaatcaccccataaataaataaataacctgaaacATTCAGTTAAATGCTgctattgtttcttttccttaacaaAGCAAAA-TCTACTGCCTTCATATTATTTAATTCTCTTAGAATTAGCTACTTTTAGCTACAGTTAGAAAATTAGCTACAGTTAGAAAAACTCATATTCAGTAATCTGAACAAatgaaaattgt-----tcttttttaaagttaaaagaaCAGTTACT---ATCCTCTCTTAC-TATTTAGTTGGAGATTTTTTCAAGACCAAACAGAGAACTATTATA-AATTTAACTGACACATT-TAGACATTTAAGCATTggtttttttcgtttttactaTACCTAACAACTTTCAGTCatttatcttttcatatgcttgtttG

a score=30661
s chr3           106570038 1691 + 160039680 AAAAACAGTGATTCAACCAAAATTTGGTTTTAAACACTGATTGTAGAAATTTGAGATTACTGGTTGTCTCTTTTAATCAGATGTAACAT-TATAATGTTAGAAATGAAATGCAAGTAAATAAGGACAACATCATAACTTATAATAATGTCTGTGGATCAATGCAATCTATTAATGATCCCTGTGGCATAATTAATACCTAAATAGTGCCATGAAGACCTTAAATTACATTTAAACTATCTTCTTCTGGTTCCAGATCTCTGctcgttaaccttcttcctcgtgtttatta--------ttaccactat------tactatgggatgtcctt-atttctgaggtttattatttatttttgtgtgcctttactagaatataaacc---taagtgtc-tatttcattc---attcac---atat-taatgactttaaaaactgcctgacacctaacagagcccaatcaaaatgttaaataaatgaaACTGTATCTA--CACTTGTTATTATTTTTATTGT--TGGCAAATAAATTCATCTGGTTTCACTGTAATCTTCC------TGTGCTTTGGGGAAGTAATT--------------------TGTGAA----------TCTCCACTTAGCCCTAATGAATT----------ATCTGGCTTGTGCTTTTAAATGATATACTGTCAATGTGTTCTTTGTTTTGCTCATTGACTGACTTTTTT-------CTGCTCCTCAGAAATCAACACTATTTATTGTACATGTGTGTGGAGCTGTCCTTGCCTTTAGTATGGGCTCATTTTACATGTTTGTTCAGACAATCCTTTCCTACCAAATGCAGCCCAAAATTCACAGCAAACAAGTCTTCTGGGTCCGACTACTGTTGGTTATCTGGTGTGGAGTAAGTGCACTTAGCAGTATCCTTTGTTGTGAAGTGTTGTTTACTATTGAAAAAGAATAGAATAACAAAA--CAAGTGAGTGCAGTTTGGGGCAATGTAAGAACCATTTTTTAATTGTTATATACATACACACACACACACATGTATTTTATCTACACTTATGTAAATGTACCATGTGTATACCTGGTGGccactgctaacaggagagggtatcataccatggaattcaacgtgggtgctgggaactaaatctaggtcgtctgcaagagcaacatgtgctcttaactgctgaggcactgcttcagctccCCTAGTCTCTTTAAAGTCACCCTCGATTAAAGGACACTGTTCATAAAATTCAGACTGAAATTAAGTAACTGAGCTAGGAGCAAAGATACC-TTTA---TAGTCATACT----TCAGAAAAAGCAAGGAAGAATTATTATGCTCACTACAAAAAATTATTCTGCGGAAATTTATGGTAAAGCAACTAATTTTTAAGTAAAGAGGAAAGGACATGA---TGTAAACCATTTCCTTGT--TACTCTGGATAGATCTTTAATTTTAGGACTGCCTATGACATTAATTCTTaaaaaaaaaaaaaaaaaaaaaaaaGGATTGGACCATAGTAATAAGTAATAAAAGCTAGCCTTTAAAGTTAGCCTTTAAAATGTTTTTTTttgttgttgttgttgatgttgttgttgttACAAAGTACAAGTTTAAACCTTCAGATCTCTAAGAGTCTTCCTTGACT-------TTTTTTATAGTGATGACTTGCTCATCAATTTTGTACAGTAGTGATTTTGGTCCTGATGTAGTACAGAAACTACACTGGAACCCGGAGGACAAAGTAAGAGCTTGAGGTCTATAAAATGTATAACCgtgt
s HiC_scaffold_1 116870646 1474 - 233722169 agaaaaagcaaTTCAACCAAAAACT---TTCATGTAGTATTTTTAACCATAGGGTATATATAATTGTCACTTTTAAGCA--TGgagtatatataatattaaaagtaaaat-taagtagATA---------------TCTGTAAGA--------GGAGTAAGACAAA----GGAAAATCTGTGTCATAtaatcaaaacc-aaataaaac-----------tagaataaaggataagtattttcattt----------ctcagacctttaaattatatttaagtgTAAATTGGATTTCTTTTAACACTATATGCTATATTGTGGAATTTCCCTGATTTCTAAAGTTTATTCGTTGTTTGTAAAT-CTTTCACTAGAAT-TAAACTGTATGAGGGTtatatttttgtctctgttcACTGTGTATCTGAGGACTTTTACAACTTTCTGGTATCTGATAAGTACacaaaaaaacattaaatgagtaaaaaaataaatgattaattaCCATTATATTTTCCACAGTGACATATAAAATTGTTTGGTTTTACTGTAATCTTCAGGTTTATGTTGTTATGAGAGACAATTAATACAGGAAGTCCTTTGCATGTGGAATTTGCAGTTTCTCCACTTGGT--GAATGAATGCAGTGTTTAAATCTGGCTTGTACTTTTAGATACTGTGTTGCCAGTgtattctgaatttcttttactgacttactttttttttttccctacctcTCAGAAAACAGCTCTTTTTGTTGTACATGTCAGTGGTGGTGTGCTCACTTTTGGTATGGGCACACTTTATATGCTTGTTCAGACCATCCTTTCATACCTCATGCAGCCCAAAATTCACGGCAAACAAATTTTCTGGATCCGACTACTGTTGCTTATTTGGTGTGGAGTAAGTGTATTTAGCAGTATCCTTCACTGTAAAGTA-TGGGTACAGTTGGAAGGGAACTGAGTAGCAAAATTTAAGGGAGTACTTATTGGCACAATGTGAGTACC---TTTTA-------------------------------------------------------------------------------------GATAAAAGAG----------------ATTC-----------------------TTAGGTT---------AGTAA-------------------------------------------------------ACCCTAAACCAAAAgatttgaaacattaaattcagaTTGAAATTCAATAACTGAGCCAGAAACTAAGATACTGTTTAGGTTGGTCATACTCATGCCAAAGAAATGAAGGCTAAGTTAGTGT-TTCCCTAC--ATAATTAT-------AAGTTCATGGCAG---AACTAAATTtccaagaaaaaagagagggattGACTCTGAGAATCATTTTGTGGGAATCTTCTGGGCATGTTTTTGGTTTTACTACTCAATGtgacattaaatatttaacaaaatgaa--------------tTTGGACTTTGGCAACAAAT-GTGTGAGTTATCCTTT----TGGGCTTTGAAAATGAAGGGTTT----------------------------------------TTTGGATCTAACGATCTCTGAGATTCTTCcttgacttattttcttttttatagtgttGATTTGCTCATCAATGTTGTATAGTGGTGACTTTGGCACTGATATAGTACAAAAACTTCACTGGAACCCTGAAGATAAAGTAAGAATTTAGAGACTGTAAAGACTGTTATCATAT

a score=44580
s chr3           106572700 1751 + 160039680 ATGTGACTTCTTGGTTGTAGAGTGCAA---GTTCTGTTTTGTCTTGGTTATTTAG-TGGAAATTATATTTGTTGTAAGTGAAACAAAGACATCTACTATGGGTCAGGAGGGACTCCTAGTAGCTA--CTGCAATTCTCAAGACATGTTCAA--AATTCAAGGAATAATTTTAGAAGGAAGATTGGCCTATAAGAATTTGATGTTGCTAATTTAAAAACTAACATCTATTATTTGACTAGGATGTAACCCAGTGGCCTTTGTTTTTTCTCTTGGACTTCAGGGCTATGTGCTTCACCTGGTTACTACGGCAGCAGAATGGTCCATGTCATTTTCCTTTTTTGGATTTTTCCTTACTTATATTCGTGATTTTCAGGTAATAATTTTAA-TTCTGTTCAGTAGAACTTCCTTCATATAGAATAACAGAATATTTCATTGACAATCTCCCTGTTCATTTTGAAAATTAGCATTTTAAAATCTGGCACCAAAGAATGTGATATAAGAGTAACTTCT---GGTAAAATTATTCCTGGGTTTGAGGAAGTTGTGTGCTGCAAGTAAGCTTCCCCCTTGAT--AATGTAGTTGCAAAGCATATCTGAAGAAATTCTATAATTTATGTTTATTCACCTAGACCCAGCCCTAACACATGGCTTTACGGG--------AAAAAAAAAAAAAAAGAACTACAAAAGAAAAATAGGAAACTTAGTGAGGCAAGAACGTGTTTTTTTCCATTTCCCTGGGTGC---TCAGGATGGTGCCTGTGGCAGAGACTTCCTGTTCCCCATCTGATCATTTTGTTTTTCTGACTACATAAGGGTTCCTGTGACACACAGTGAAGAGATAGTCTCTCAGAAGGGCAAAACTTTTCTATATAATTTTCTTTTCTGTTCCAGAAAATTACTTTGCGGGTGGAAGCCAATTTACATGGATTAACCCTCTATGACACTGTTCCTTGCCCTGTTAACAATGAAAGAACACCACTGCTTTCCAGAGATTTTCAGTAACTGGATATAAGTCTTCTGTGATGATTGTGATTCTCAGGGACTGGGAAAAGATGCACAAAAGTTGCTTATTATACTGTGAAAATTTGAATCAATTAATCAAGGCTGACAGTGACACTAATGAAACATGAT-ATCAGGAAAAATGTAATAAGCCATCTGGTAAGTTTTCTTAAAGGATGTTGTTAAGAAGTCCATCTAAAAACATGTCTAGACTTTTTTATATCCAGAAAATAAAACCAAAGGATAATATCATTGTAGTGTTTGCTACTTTATCAATGAAAGCCTGAAGTACACCGAGTAGTCTCTATACTTGGCCTTAAACATATT-------ATTTTAAAAGTATCTTTTGTTAGGAGTACTTTTATGAGAGACATTTTCCATGGCACACCGTAATCAGCATTGGTAACCAAATCATTTGGAATCACGGCTTAAAACTGAAGTTTTATTATATTAATACATTTCTTACAGTACTTAAAAATGtgttgctgttgttgttgttgttattgttgttgttgAATCTTTTCTGTAAATAGGAGCCTGCCTGAAATAATC----TGAGTTCTTTGATGGCTTAAATTTTGCCTCTCTGCACCCCCAAACAAACACAAAATCAATGGGTATTTATTCTGGCCACATGAATATTAACAGATCTATCATATATGCTTATAATAATTTCATCAAGTCTGGTCTCTGAGATTAGAATTTTTAATTACCAGTAAAAGAGAGAGATTAT--TTGCAAATTTGCTACCATTTTGTTCTTTATAAAATAAAGGTT
s HiC_scaffold_1 116872679 1612 - 233722169 ATGTTGCTTTGGGAATGTACACTAGAAATTGTTCTGATTC-TCTTAGTTACgtaaatgaaaattttacttgTTCTAAGTGATTTTAAG-----TACCAT---TTAGGAAGAATTTCTAATGTCTAGTCTTTAAT-CACAAGATATATTCAATAAATTGAATTAAT--TTTCAGAGGGCAGACTGGTTTATAATAATTTAAGCTTTTTTCCTTGAGAAT--ActataattatttaaatgaaatttcacaA--------TTCTTTCTTGTCCTAT-CTCAAGGGTTATGTGCTTCATATGGTCACTACTGCAGCAGAATGGTCTATGTCATTTTCCTTCTTTGGTTTTTTCTTGACTTATATTCGTGATTTTcaggtaagaaaaataaattttatttaagaaaacttttttcagagggagtaaaagaaaaattccttGGTAAGTtccaggct--ttttaaaaattaacagcttAACATCTGGCACCATAAA---CAACATAAAGGCATCTCCTCTAGTTGAAATTATT--------TGGTAAGGTAGTGTATTATTAGCGTGTTTCAGCCTTATTtgaagatacttttaaaata--------gaattttcatgTTCATTGTACAGTTACAGA-AGCCATACTTGACAtttagttttattgattttgtttagtagaaactaaaca------------aaaaatagtgCACTTTCTAAATATAGAAGCTGGTTTTTCCAGATTACTTGGTAGTAAGTAAGGATGATGTCT---------------TACTACTCCTTCGACTGATTCGTATCTCTAATCAAAGAAGATAGTCTATAGAATGTATTGAAGAGATAATTGCTAAGGAG---CAAACTTCTCTGTataattttctcttctgttccagAAAATTACTTTACGCGTGGAAGCCAATTTACATGGATTAACCCTCTATGACACAGCTCCTTGCCCTGTTATCAATGAACGAACACAACTACTTTCCAGAGAATTTTAATGAAAGGATAAAAGGTTTCTTTGATGTTTATgattctcagggctgggggaaAGGTTCACAAAAGCTGCTTATTGCACTTTG-AAATTTCAACTAGTTAATCAA-GCCGTCTGTGACATTGATGAATACTAATAATCAGGAGATATA----AAACTGTTCAATAGTTATTTTTGTGatat--------------cacttaaaaatatttatgcctctttttat-tctagaaaataaaaccaaatgtctACAACATTGTTATATTT---------TCACTGTAA----GAGAAACAAC--------------TTCGGCCTTTCACAATTTGTAAGTCATTGTAAAAGCATGTTTTCATAGAAATACTTTCatgagaaacattttcttttac---ctCAAATAAGCAGTGTTAGTC--ATCATTTAGAACTGAGTTTTGAAGTTGGAGTGTTGCCGTCCTAATACATTTCTTACGGTcttggaaaaaattttatt-ttatt-------ttatttattttttggaa-----tctGCATATGACAG---------AACAATTCAAGTGAATTCTTTTATAACATAAGCTTTGCATAAGTGAATCTACCATAAGGC-CAAGAACAATGG-------------------------TAACTGAAATATCATACATGCTTGCAGTAGTTTCCTGAAGCCTGTTCTCTCATGTAAGA--TTTTAATTACCAGTCAAGGAGAGAAATAcctataataaatttatttccatCATGTTTTATATAAAACAAGGGTT

a score=14710
s chr3           106721211 1890 + 160039680 AAAAAGTTTATACAGGGGATTTAATGCACAGACACTCAAAGAATTGAATACATGACAGTAAGATACAGTTTTAACTGAGGTGTTAGTGTGGGAATGGAGAAAATGGTTAATCGATTAATGTAGA-GCAAAACTTCAAGAAACAGAAAAAAATAATCACTTCT-------------------------AGCCATGAGAAGGGAGATAAAGGTTT----TCAACAATTTATGGCAACTACCAAATGCCTATCTGTGTCTACTGAATAAAACTGCTAAGGAGGACATTATTACATTGGCTTGCAA-------------AAGCGCATGTACAAGTGCAGACAATTTAAGCCTGACACCGGAAGTATTTCATTTCATGTAGGCAGTGAAAGCACTTTCTCTTTTAGTTCCTCCTTTGATCCGGAAGAAGAGACCTCAACCTTCGCTGTCGATTGGACCACGTCATAAGGGCGGGGCCATGGCGATCCATTCGCCTTGGTAACCATATGTGACGTAGCTGTATGC--CTAG-GATCCCTGGCTCTAGGAGCTCGGTTTTAGTGGG----------CGCAGACTCC------GATCAGGCCCTGTCGTGGGTGGTGCTATTGATGCCACGCCCCCCACGTCCTCTCTGACTGGCTGTGATGC-GTCACGTAGCC------AGAAGAGACTCGCCGGAAAACTGTGAGCTTGCCT-GAGGTAGGAG--------------------TCTTCCGGCTTC-------TACAGCCACTTCCCACGGAAGCTGGGGGAGCCGCCCTCTCAACTATCTCCCGTCACACCCTTCTGT--TCGCTCGCCTCAGACGCTGCCCTTCCACACCCGTGCTCTGGTTCGCGCCTACTTGGGGACGCTGTCCCCCCAGTATTCAC---------TGCCCTATCCCCTCCCACCCATCTAAAATGTCTAATAGTCTCCAGAGCGTCATTCTGAAAACCGCAGAGGAAAAGTCAGG------CTCGCGCTGGTAAGTACCAGTTCCCAGTTCTTCAGGCGCCCGCC-CACACCCTGTGACTTAGGTTGTCATGGCCGCGTCAGCTGACGTTCAGCCGCGCGCACCGGGTGCT---AGCTGCGGGGATGTGGGAGCACAGCGCCATCACAGCACACCTCCTTACACCGCACCCACTGCAC-------ACCAGTGC----AGAGCCCTTGGCTCCCAGTC--------CTCTCCAAAATGTAAAGCAGCCCGCGATTACAACGCAGCTACCATCTCCTGGCCCC-CAGCGCGCCCTACGCCACCCGCTCGAATTTCATAGGCGGAACAAGTAGATACCCAC--GGAAGTAAAACCAACTTGG-CGATGCTCC-----------AAGAATCTCAAACACTTAC---------CAAAACACCCATCGT-----GGATTAGCAAGTGCAGCCC------------------CGCGGCGCTGTAACTTCAAGTGAAAATAGTCCCATTTTAATGTACTTAGAAAATG-----------------TGTTCTAGAACAAGGGACTTTAGTATTTGAAAATTTCAACTAATA----TGGA-GAAAAGTAAAAACTTGAAATGTG-------TTTTTCCAGGTAACACATTTGAAACGGGTCTAAAAGGGGTGCATCTCATTGGTTGTCTCTACAAAGGAACAGTTGGAACACTGTATGGCTCTGGTTAGGTAGGAAACTCACTATAGCCAGGACTGTCCACAATACAGCCTGGGTTTACCTCGTGTTAGGATTACAAAGGGTTCTGACAGTCTTTGGTTTGGAAATGTATCACCAGTAACATTTTTCTTTTAATTTTGTGTTAATCCAGATGAAATAAAAGCAGGAACAACAGAATATTCCTTAAGGAACAATTCTTTAATTTATGCTTTCCAGAGTTAATGAG-------TGCTTGTTGAGAAGCAAAGATTAG----TAAGTCTGTAGAAGGTAAAT---GAAC--AACATAAAATCTAAGA----GCAAAACTGATGAAAGGGGATTGTGGTTGAAAAAAGAAAATCTACCTGGTGTTTATTGCAGCTTTGT--TTGTTACCATTTATGAGAC-TAATGTTTCACTTTCTAATA
s HiC_scaffold_1 117188664 1893 - 233722169 aataactttttatagGAAACAAAACTcggagtgaatgaatgaatcaccTATATGACACTTATAA-----TTTGACCAAAGCATGACCACAGTAGAGAAGGAAGGTGT-----AGTGGGTGTAGAAGCAAAGTCTaggtaaaaagggaaaaaaagacacttCTTTTTAACTGGGAACAATAAATTGCGAGCCACAGGAAGCGTCTAAAATCTCTCACATCAGGAACTCAGGACGACTTCAAAAAGCCCACTGATGTCT--------------------------TTGTAACATTGGCAGGCGAGAAAAATTTAGGCAAGCGAGCTTAAAAG--CAGAAACTTTTCCAATGACCCCGGAAGCAGTTTCTTT-GCATAGATATCAAGGGACTCTAATTGTATGATTAGTTCCTTGATCCGGAAGAAGAAACAACAAACTTGATTTGTGATTGGATTGCATCATAAGGGCGGAGCGTTAGCAAGCCATTCACCTTGGGAGCCGGACGTGACGAAGGCAGAAGCCACCAGCAAAGTTTTGCTCTTGGCTGGCGGCGTCGATGGGCGGAGCCCAACGCAGTCTTCTAAATGGAGCCGGCTCTGATGGAGGCGGTGCCAGAAAACCAGACCTCTCCGCGTCCGCCAGTGATGGCTGCGGAGCAGTCGCGTAGCTCTGTGGGGCGGAGATTTG--GACCGATTCTAGGCACCCCTAGAGTTTGGAGGGCGGCGTCTGTTCCACAAATCTTCCGGCCTTTCGGAAGTGCGCCGCCTCTCTTCAGAGGCTGGGGATACGCCCTTC---AGGAAAGCCCGCCCCAGCACTCCGTAGTTGCTGG---CAGCTGCAGCCC-GATATTCTCTCGCTCTGGTTCTCTCCCCCGAGAGAATTCTAGCTGTGTACTACCCACGTTCCTAGATGTACTGTCCCCCGCCACTC--TTAAAATGTCCAGTAACCCTCAGAGGGTCTTCCTGAAACCCGCAGAGGAAAATTCAGGCAACGCCTCGCCTTGGTAAGTACT-GTTTTTGAATATCCACGCACCCGCCTCTCGCCGTCT---------------------GTCAGCTGGACTCCGGTC-----CTCGGGTTTCTCTGAGGTCTGAAATTGAAAGGCTTCAGTCCCTCCGGAGTGCGTCACTTAAGTGCGGAGCACTTGTGTTTGCTGAACCGGAGCTCAGAGAGCGCTT-TCTGCCGGGCAAGTGAATCTCCTTAGAACCTGATGCCTTTTGCCATTG----------------TCCTGGCTCTGCAGGAC--------TAAGTGGCTCAAGTTTCAAAGGCAGA--CAGTAGAGCTCCACTGGAGAGAGAAACCAACATGGCCGACGCTCTTGTGTGAGCAAAACATTCTGGAAAATTCTCTCAGGTAGGCAGGACACGCGCAGTCGGCAGGAATAGCAAATTCGTcccgggggtggggtgggacggGGGGGCGCTG-GACCATGAGTGAAAATAATCGTATTTTAATAGA--GAGAGGATGTAACGTTGAACAGAAGTTGCTTTAGAGCAAGgaaattcagtattttaggaTTTCAGATAATAGCTTTGTATGAAGAGGAAATATTTCACATGTAAAATCATACATTTCAGATAGTGTATTTGAAGCTCGTATAATGAGACT-----------ATCGTCTGTATGGAGGAACAAT--------------------GTTTAATGTGAGATTCA-----------AGTATTTACA-------------------------------------------GACACTTGTAAATctagaa-------------aacagtatttttaaaagcttatattA----CGATGAAAT------GGGAACGACTGTAT--------AggcagaaagttttaaaaagtacgTCCTATGGTGTGTGGGTATATTATATTTGGTGAGAA--AAAGAGTAGCAAATAGGCCtgcagaaagaaaatcaagaacagaacatggaaattaaaacttgACAAAAGTTATGAAAGAGATTCATATTTGAAGAAA--------ATCAGGCAGTTATTCCACTTTTGTGCCCATTTGTATTTATGAGACAAAATGTCACAGTGTccaata

a score=83417
s chr3           106728858 3667 + 160039680 ACTCACTGTCTTTATGTCTACAAGTCA-ATGATTTTctcccc--taaattagtcttactaaaactattaatga--ctcatgtcattgtttctactgtagatgtttagccttaatcctatttgac-tccaagaaacttttaatataatt--------ttgttcaaactctttctttgtttggcttccattgcatcaAAAATAATTATTCTCTTTCAGTTGCTTAAAGAATAGTTGGAAATCACTGATATGGCTTAGGCATATTAAGACTAAT------ATACCCATTGAACTGAAAGGCAAAGA-ATACACATGCACACCTACCTAAAGGGGAAGAAAAGATCAATTATAAAGCTACTGTAGGCTAAAACAGAGATAATGTTTCCTTGAACCAGAAAGTTTAAAAAGCAATGTGGAAAGAATTTTAACAGATAAGAGAAAGTTAG------ATGTCAGCAGGATATTTTGAATAGGTTAAATAGCAAGGTGAGAAAGCAGAATTTATATATTCTGATACAGGCACCTA----AGATAAAATTCCAAGGAATTTTGAGAGTATGGAAGACATTCTGGCCATGTGGAATTTCAGAAGCTCACAAGATTGGAATAAAATGGCAAAGGAGAGGTCG-CATATACATCTTATACCCCAAA-----------------------AATGATAGAGCAATATTTTATTGATGAAATAGAATCAATTAGTACTTA--------------------------AGAGACAATGTGGTGAAAGTACAGAATAAAAAATTTCTATTATTTTAGCTAGGAAAAGTTGTCAAA-ATGGTTAAAAGTTTTGGAATGAGTTTATTTAAGGAAAAGGTGCAGTTATAAAC-CATCTCTTCAAATATGTCATTCATTTTACTTCATGATAATTATGTCTTTGTGTTTATGTATCTAGT------------------------TTTAGTGAAGGATTTAGTAAGTATGTTGTTTATGGATTATAatagcaaatac-ttagactttgagaaccatcctttctcttgtaaatattcaactctgttgctgcag-gcagcagccactgtgtaataa--------------------------taaaactttagttttg--gatactgtaattt-agtctcatg-actttttatagtacagaattactgtttgaagtgtttttcatccatttaaaatgtgaaaactatacagaggtatgagttaacataaaaccaaaatgg-cttaggtttaggatacaggctgtaaatc-attgacccttTTCCCTAACAGAGCTTAGTGTTTGAACCATAAAACTCAGTACTTgttggttagttggttggttggttggttggttTCAagacttggtattgtattgttgctcaagttcaacttcagttgctcccacccctgagttctaagattacatgcatgagccaccatgcGTGACCCACACTGAATACATTTTCATTTACTTCTGAATAAATTGATGTTGAGTTTACAGTGTATTTTGTGCAGTGATAATGCACGTGGGTCTTCAAACTCCAAAAGCAAGAATTAAGGCTCCCCTCCAACATATTTCTCTTTAACTTTGCTAAAAATTGGTATGCATTTTTATACATAGAGGACTATTCAAAACTTTCTGAAGATAGTATGTTATTTGGGTTATAATGAGGATACATAGAATGTTGGGTATGGAGTTTTTTCATTTATACTTGAT--TTTAAAATCACACCGGTAAAACAGAACTCTACATTTTAAA-----AATTAATGTTTGTCTTTTTAAGTGTTTCTTCATTTGTTCTTAGTCATCT-----AAGGATATATTGATTCAATGGAATATGTACTCCACAGTTATATTTTTAGACAATAGCATGAAAG--AGTCTGTAGACACCTAAACATAGATATATAATAATTATTTGT---------CATGAAGGAAATTAAATGATATTTTAT--------TATGAAGGAC-----AAAATAGTTAAATTGGCCACAGAATGTATCTCTTAGAAAGTATCATTTCTGTTGTGACTGGCGCTCCAGGTAGAGTTGTATAGGAAAGAAGCACTCAGCTAGA-GTGATGTGACTGTCCTGCA-TTCCTTAAGAGCACTATACTTTTGAGGATCTG----ATT--TTAAATGTAAACAATTTGGTAAGTCTATAC-AAAGTAATATACAAAAAAAAATGTATTATACGGA--GACTTATGTATCTTGGTTTTTTGTAAAAC-TGACAATTTGTATTTAAAACATGGCTCATAAT----GACATTGCAGTGGAATAGTTTTAAA----------------------CTTTTTTCT-----CTCTCCAGT----------ATGCTCCATCTCTCAACTAAAATTTCCTTGGTATTAA--------------GTTTGAATTGCTTGATAGTAAATTATTAG--AAACAATTGCTATACTCAA----TGTGGAACTTGAAACCTAATGTACACAGAAATAATAAAAA-------GGAAATTTTGATACATGAGCATGCCCATTAAGTCTACAATATAAAAACATGGGAAATTAAAGTATCACCACATGAGAGATCTCAAACAGGAGAAAAAAGTTGGTAGTAGAATTTGTT-----------GAGGAAAGAAGATAGAATAAA-TTGGAGGTGGGGA---GAGTAATAAAAGTAGCATAATTAGTGTTAGAATTAAAGTCCTCATTAAAAGTAAAGGAAGAGAATAGAAAGAAGGAAAAAGAATGATTATTGTG---TAATGAGTCTTTTCTAATAGCATTACTATTTGAATAA-AAAATTAGAAACCTTTTCATTTTGGAATAAATGTTAAGATTTCATAACTTGCTTGTAAGATCTGAATTAAAGTTGATATAATTTTATCTTCTCTTCAAAGTCTATCCATGATGTGTTAA------ATTGCAAATTCGATATTACATACTGTTATTAAATTTTACTATCTAAACTAAT---CGAAAATACTTGTTTTAAAATAAAATGTATAGAACTTGTAGTATGTTGTGTTTATTTACTTAAAATGTTCTTTTAAGTATTTCAGGGTGCATGTACCAAGTAGTTCCTACGATTGGCAGCGATGGAAAAAAACTTCTGCAATTACTTCCAATTTCTAAATCTTCTGGAAATCTTATCCCAGTAGTTCAGTCTCCAGTCATGTCTCATGGTTTGAAAGCGAATACTGAAAAACCAGTTCAAGTTACTTTTCAAACTCAGATTTCCAGCTCTTCCACAAGTGCATCTGTTCAATTGCCTGTTTTTCAGCCAGCCAATACTACAAAATGTTTTTTTACAGGAGCAATAGATACAACAGGAAAAGATAGAGTTACTTCTGTGAGGACTGGAAATTTTACACCACCAGTTTCTAACATTCAGAATCATGGTGTGAAAATTCATAAACTCACCAGGCAAACATTTACTATTCCTCCCTCAACACAAAATGATTCATCTCATTTTATATTCAATACCCCAAGTCTCCTACCAAATGTGAATTCTTCAATTTTGCCTTCTGGGAATCATTTAAAGATTCCAGCCCATGCTGAAGTGAAATCTGTACTTGCATCATCCTTGCCTCCTTTGGTTCAGCAAAAGATACTTGGAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTTTATGTACATCCTGTAAATTCAGTGAAATTTGTTGTTACCAAGAAAACTCAGACTATTTAC---------------------CCCAAACCAGTGACATTCAATACCTTGCAAATTCCACCAAATGTTGCTACAGAAACACAATTAAAAGGTGGTCAGCATCCTCAAGCTGCTCCAGTGAACTCGATTTTTCAGGAGTATCTACAGCCTGGAATCCCATGTATTATTCCTGTTAAGTCTTCAAATAATGTGGCTACAAAGGTTT
s HiC_scaffold_1 117196778 3642 - 233722169 ACTTGCTATGTTTATATGTACTCCCCAGATACTTCTTTCCCCACTAATCTACTCTTACTAAAGCCAGGAATGATTCCCATACCATTATTCCTGGTGTACATTTTAATC----ATCCCACTTGGCATCTCACAAACTATTAGTGGAATTGCTCAGTTTTCTTAAAACCCATTTTCCCATTGGCTTCTGTTGGACTAGGAGCAATGGTTTTCCTTctgtcattttaaatataaaggacACTCACTGAAATGTTTTAAGTAGGGAAGGACCAATTTTAGTGTGCTAAATGAACCAAAAAGAAAGGAGATACATATG-------ACTGAAAGTA----AAAAGATTAATTATGAAGT---------------CAGAAATGATATTTGCCTGGACTAGAG----------GCAA------------------ATACAAGAGAAACTCAAGCAGTAATATGAATAAGAGTTTTTGA-TAGATTGGACA-TAGGGTTTGAG-GAAGAATATACAGGCTCTGACTCAGGCACCTATTATAGATGAGAAGTTCAAGAATTTGGGGATTTGGGTAAGCA------------GATACATAAGATTCTTATAGGA-------AGTATTAcgggggacatttagatacatAAGTCTGA-ATCTCAAAGtatgcataaaaataatgaaattattgatacataagtgatcatttaattaaatgaattaaacgACCACTTatgatcatttatttaatttatttatgtagaAGAAATTAGTAAGGAGTACAGAATAGGAAGAATTTTGTTCTTCAAGTAGGATGAATTAGCAAAGACAGCTGACGGCCTTGgagaaaggaca-----agaaaagaagCAAGTATATTTGTACTACATCAAATGCATCATTTATCTCACTTATTGTTAATCACTTATACATTTCTATGCACTCAGTAATTTTTAGGAAATACAGGTTGAGTGTAGTTGAAGATGtagcaaacattttctgtaaagGGCCAGATTGTAAATATATTGGGCTTTGAGAATCATA---TCTGCAGTGACTTTTCAACCCTACTGTTGTAGCTCAAAAGCAcctatatacaaaatatttttttggaaaatgagtGTGACTAAGTGTTTAAGTTTATAGATTCTGAAATTTGAATCAGATATAGTTTTCATGTCACAAaatgtcattttga--ctttttttgttcatttaaaatacaACAGCCATTCTTGGTTTGTAGGTTGCACAATAACAGAGTAGACCAAAATTTGGCCTACCCGCTATAGTTTTAATACCTGTTTCCTCTGATCTAGCTTGATGCCTGAACCATAACACtcagta--tatt----------------------ttcatttaatgaatTAATGTTGAAT--------AAATTC---------------------------------TTATctgtttgg-----tgtgtgtg--------tgtgtgtgtgctggtttgatt-----tggtttggt-ttggttttgccaGGAGTCAGGAGATGAAAGAGTGACTTTGCTGCTTCAAGCACTGGAAGTAAGAATTTAggct---------------tttctttgcattta--gaAATTTAGTTTGC--------------------------------TAAAAGGCAATATAATATTTTGCTATTAAtga--------------------ctgagatttttaaaaatacatttaatagttAGAAAACACACC-----------ATTCCACTTTGAAGAGTCTTAATTAACCTTTgtctttatg-ttttttctttatttggtctTTGTCATCTCATCTAAGACAATAATTTGTTTGTGAACCATGTACTGTGCGTTTGTGTTGCAAGAATTTAGCATGTAAGGAAGTATGTAGGTA-----ACGCTGGTTGATAGTGACAACTTGTGATACAACTCATGAAGCAAATTAACTGGTATATTATAGGTTAATTGTAAAGGAATGACAAAGATAGTTAAGTTAGCCAGAGAAT-TATCTCTTAGAAAGTATTATTTATGTTGATACTTGAAATCTATGAAAAATGATGTGTGGGGG------TTATCTAAACATGATAAA----TCCTAAAGTCCCTTAAGATCTACGTATTTTCCAGAAACTGCAAGATTGTTTTAGTATAAATATTTTGAGATGTTTATATTCAGGCAAT---CCTGTAGTCATTGATTATACAAATGGATTAGTATATGTTGGCTTTTCTTGAAGTATGACAATCTGT-TTTAAGAAACAACTCATAAGCATGGGCATCAAAATTAGCTATGTTCAAAAAATACTGGTGTCCATTCTGGTCATCTTTATAAAAACTATTCAGCTAAAATTACCATGgtatttattatacataaaatTCCCATGGTGTTGATTGTATGTAAACTTGTATGAACTGATAGGTAATTGATGATAAACTAAATAATTGCTgtatttaaaacttatttaacACTAAACCTTAAATGTGCTGAAACAATAAGCAATACTCAGAAAGTTGTCTTGTATGAGTA--ACTGTTAAGTCTACAGTACAAAAATGTGGCAAACTAGA-TGTCATCGTA--AGATGTcttaa---ggaaaataaagtgaTAATAAGAACTTGTGAGTCATTGTCAGTGTGAAGAAGATATAACAGAGTTGGaagttaaaaatagagaaatcaaa------taATTAGAGGTGAAATTACTG--CATAgtaacagtaaaagaa--------aaacaagaaaaaagaat--ttaaggagAAGGAATGAGTCTATTCTAGTACCATTATATTATACAgagcaaaataataaatactgctATCTCATATTCATTGT---------GTAATTTTGTGAAGAGGTCTCAACCTGAGTTGACTATATTTCTTCTTCAGT--AAATTTGGTTTGCAATATTTCACTTTGACATTGAAAATAGGAAATCGTATTCG----------TTTAATATTTAAGATAATATTTGCAAAtactaatttcaaaataaaatgtgtataccATG-AGTATGCTGTATTTATTTACTCAAAATGTTCTTTTAAGTGTTTCAGGCTGCATGTACCAAGTAGTTCAGACGATTGGCTCGGATGGAAAAAATCTTCTGCAGTTACTTCCAATTCCTAATTCTTCTGGAAATCTTGTTCCACTAGTTCAATCTCCAGTCATATCTGATGCTTTGAGAGGGAATACAGGAAAACCAGTGCAAGTTACTTTTCAGAATCAGATTTCCAGCTCCTCCACAAGTACGTCAGTTCAATTGCCCATTTTACAGCCAGCCAATTCTTCAAGCTATTTTCTTACAAGAACAGTAGATACAGCAGAAAAAGGTAGAGTTACTTCTCTGGgaactgaaaattttgtttcttcattttctaaagtTAAGAGTCATGGTGTGAAACTTGATGGACCCACCATGAAACCATATGCTGTTCCTCCCTCAACACAAAGTGATTCATCTTACATTGTATTCAATCCCTCAAGTCTTCCAATGACTGTGAAATCTCCAGTTTTGCCTTCTGGGCATCATTTACAGATTCCAGCCCATGCTGAAGTGAAGTCTATACCTGCATCATCATTGCCTCCTTCAGTTCAGCAAAAGATACTTACAGCTGCAACCAACAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTATTTATGTAGCTCCTGTAAATACAGTAAAAAGTGTAGTTACCAAGAACTGtcaaaatatttacccaaaaCCTGTTAGAGAAATACCAAAACCAATGATACTCAATACCACACAAATTCGAGCAAAAGTTGCTACAGAGACACAATTAAAAGGTGGTCAGCATTCTCAAGCTACTCCAGTGAAATGGATTTTC--AGAACATCTACAACCTTGTACTCCATCTCTTGT--CTGTAA---TCTCAAATAATGTGGCATCAAAAATTT

a score=91966
s chr3           106732798 4059 + 160039680 [encoded data, 4536 characters]
s HiC_scaffold_1 117200679 4209 - 233722169 [encoded data, 4536 characters]

a score=26048
s chr3           106760113 1376 + 160039680 GAATAATCTTTTCTGGATGGATGGATGGAACAAAATCAATAAGACAAA--GAAATTGGAATATTTTCCA-GAAATAAAAGATTTCTGTATGATTCCTATTACCAAGGACTGTGTTCAAA--AGGAAACTGAGTATGTCAATTATCTAATGAATGGGACTCAAAAATTTCCATCAGCTTCTCTCTTATGTGACTTTGTAGAGTGGAAGTAGCAAGATTTAGAGGCTAGAAATTGATTTGACAGTTGTTAGGAGACTAACATTTAAACTTGGACCTCttttttgtagtatttggggctaaactcaagggctcacatttgctaggctagtactctgagaaataaccacaccagcagcTGGCAGTGGATCTCAAGCCACCAGTGCTACAGTGTCTCTTTAAAAAAAATACCCAAGTATGTAAAAAAAAAAAAAAAACCAAAAACACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTT-CTGCTTGATATGGGAAGTCCATGACAAATATTCTCTTCAGTGGATGTGTATAAGACAGAGATCCAGTCAAAGATGGAATAAGAAGAAGCCAAA-ATGCCAGTCAGGCAGGTAATTGTTTAAGTTCTCATGGAATG--------GATGCTTTGACTTTCTAGAGAGGAA-TAAGTCACTTAAGCAGGGGGAAGTTGCAAGTCACAGCCCTAAAGCCTGGCTTGTTTTGTCAATCTGGCAGTTGAGTGTCAGTGCAAAGGACATTCCCAGCACCTGAGAAGAGAATTGAGAAAATATGAGGTCTTCATCAGAGAAAACATTTCTCCCACAGTTC-TGGAGTTTGCTAACACAGAAAAACAAGATTTCCATCACACTGTGAACACTCTC-CAAACAC---CACTCCCAACTACATAATTACTCTTTTTAAGTTTAAGAATAACATTAGAGACAAA-ATGGGGACAAT--TGTAGTATTATAGAAAAGTCACTCTTGAAAACATTTTTTATCTTTTAAGAAGT--CAGAAACTAAGCTA----TATATTCAAGTTACCCTCAGGGAACAGTACAAGAAAAATAAGTCAACTCTGCCAAAGCCTTATGTTTCCTTTATTT-------------CATCTTCCTTTTA-TTTCTTGACTAAATCTTAAGTAATTTAGAATATGCCCAATA-TTGGGTAGAAAAGTGTTATGAATATCACATATCAAAACAAGACAA---------AACTCACCTTTCACTAGTCAAACCAGGTACAAGCACAAAGGAAAAGTAATTCAAATTTCCATCATCACTTCCTTCTTAACATAGAAGGCCAGGTTTTTAAGTGAGATATTTT----ATCTTAATCACTTCCAGACCAGCTAAGTTAGTGACTAAAGTGGGATTCTGCTTGTTGATTTTTTTTTTTACtt
s HiC_scaffold_1 117282627 1290 - 233722169 GGATAGTCTTTT-----TGGAAAGACAATATAAA-TCAATAAAGCACTTTGAAATAAAACGTTGCTCCATGAAGAAAGAgtattctgtat--ttcttgtaacCAAAGCCCCTGATCAAAGAAGGGAATTG----TGACTATGACCCAGGGAGCCTGGCTCCAGAACCACATTCAATGATTCTTTTGAGTTACTTGGTAGAG---------CATTAGTTAGAGGCTGGAGACTGATTTAACAACAGG-AAGATGCAAACATTTA--------CATCCTT-----------------------------------------------------------AAAGCCACCCC------------TTGAATTTGAGCCATTAGTCCCACAG-GTTTTT--------GACTCCTGTGTACCTAAAAATAA-----------------TTCAGGTATGTTTCACCA-CTTTGAGGGACAAGGCTTCTGCCATCACCAGGTAAATGAAGGTCTTGCTATCTGAGAAAGGAAATGCTTGGCTAACACCCTCTTC--TCTATTTGTATAAAACAGGGACCCAAATAAAGAAGAGATAAGAGGAGGGAAAAGATGTCAGTCCAGCAGGTAATCATTTACGGCTTCATGCTATATTCCATGAGTAGTTATAGATTTCCAGAGAAGAAACAAGGCTCTCCAATACAAAGAAATTACAGTTCACAGCCCTATGGCTTGGCTGGTTTTATCAATCTGGCAGTTTAGGGTCAATGCAAAGGACATCCCCAGCAcctgaaaaaagaa--gaggaaatgtgAGGCTGTCATTAAAAAGGTCATTTCACTCACAACTCTTAAAAATTGCCTtcatacaaaaagaaaacttctaacaCATGGGGATAATCCTCACTATCACGTGCAGTACCCTCTTAGTAGCT-CTGTCTTTTTGCTTAAGGATAGCACTGTGTAAAGATGTGGGGAAGATGATGCAACATAATGAAGTATAAAATGTTGGggcaattttgt-tttgttaaaatgtCACAGGACCTCTGCTACTGTTACAGGCAAGTTCTGTTTCCTGAACTCT----GTGCAGTGCGTTGTCTTTCCCATG--CTCTGGCTTCTTTGGTTTCCAAGCAGAGAAACatttttctctcagtttcttAATTAATCCTTAAATAGTCTGTGATATACCCAATACTTGGgtagaaaaatgttaaatatatcaCACAACAAAAGAACACAAATTACTTTCAATTTACCCTACATTTGTCAAACTCAAcccagaaacaaag---aaatgactACAACTCTCATAATCAATTCTTTCTTAGAATACAAGGTCAAATTTCTCCTGGTGCTATTTCAGCAATCATATTCTTTTTCAGATGAGTTGAA-AAGAGATGAAAGTAGGTTTTTGCCTGAGTAGCTTTTAATTTATCT

a score=16691
s chr3           106761909 1597 + 160039680 TTCCTGTAACAAATTTTCTGGATGCATTAAATTGAATTGATAACATAATCATTTGTTCCTTGGCTAGAGTA-------ACTCATCAATAATATAATATT---TACTGCCCCATTCTGCTTCCCTAGTACTTCTCTAAGGTTTTGTG--ATTTAACTCAGTTAATCCTTATAGGGCTCCTGGGATTAAGCTCTTACCTGTATCACACATACACAGATGGTAATGATTCCAATATACAAGAAATTGGAGTGAAACCACGATTTTGCCTTATTATAGCAACCCTGGGGGGGGAATTATAGGCATTAATGATACCATTCAACATGTCAACTTTATCAAGAT---------------------------------------------------GCAGATGTTATGTTTTTATTTGCC-TGCTTGTTTGAAGAAACAGACATAAAGTAGAGAACATTAAGTCAGTGACATTTCTCCAGATATTATCAATATACTTGTACCTAACACAGAACTCTTACCTCC-TAACTA---AGTTAAACTAGCCCTC-AGATATAAGTCAG-AGCACATCTTCTTACTACA-TCATTTGAACACTCAGTGATTATCTTAG-ATTAATATA--TGAAATTATAGG--TTTTGTTATCTTTGGAT------------CAAGATACATCTCAATATAGCTTCAATAACCAGTATCAAAACCCTAT-----AAAATTTCAGACTTGTTGACTGTTAGTTGCCATGTTACCCCAGCCCCTACCAACACTACTCCAACCCAGTGGACCTAAACACCTCTGTAGATTTCCAAACTCAGGAAAAGGCAACATGGGATCAAGACAAGATCTTAGTTTACTAAGTTTACTTGGTTTACTTGAAGATGACTGGTTTCTCCTACTTAAAGAAAGACCCAAAATTAAGAGTCATGGTAGTTTCTAAAACACTCTTTTTCCCAAGCTCTCATTGCCCCACTTACATTTAA---CTCATTTCACAAAAGGAATGGATCTGCCTTCTCCAAAAGAGAAAACAAGCTAGTATACACTGATTCTGTAAATTATACGTTGAACAAAAGAAGAACTATCTTTTGTTCAAGAT--AGATACATCTCTTGGCTATTTTTATACAACCTACCCACCACACACACAATGAGTTAGTTGTGTAACAAAAGATTCTTCATAGAGTCACTTAACTGGATTAACTTGCTCCTAGATTTTGGAAGCATCTATAGTTATTGGGGGGCGGGGGAGCGGTTCCCTGCTCATTCTTGTTG-TTGGAGGTGGTGCTGCTGCTGCTGGTGTTCAAAGTTCCATGTTTCTTGGTGGAAGGCTTATGTGCTTTCTAGAACACCTTCTTGAGTAATTAAAAGTTTCAACAAAGAAGCCAATAACAGGAAAATTACCTGAACATCTGCACCTGATGGGCAGGAAGATGGTGGACCACTGGTCCAATCACTTGAGCCATTTACACCACAACACTGCAGCTGGAAGTAAG--TTCCCCAAACATGATGATTAGGAAATCAGCAGAAAAACAAGACAAAAAAACTAGGCATTATATAAAAGAGTATGCTTATCTTTCAGGTCTGACTCCAGAAAAGAAAATTCAGAATTGGTCTACTGCTACAGACTCTTTGGAACTAAATGTTCATAAGTCTGTTATACCATTTTATCCACAAAAGACCT-------CTAGAAAGTTTAAAT
s HiC_scaffold_1 117283961 1472 - 233722169 TTCTTATAATTCATTTTCTGAATGCATTAAATCAAATTTGTATTAACACCATTTGCTACTTGACTGGGGAATTCATATACTGATAAAATAGATAACATTCGTTATTTACCTATTATGC--ACCTAGTACTCTTTTAAAACTTTACACAACTCAACTAGTTTAATTCTCACTCTATTGCTAAAATTAAGCTCTTACCTGGATCATACATATACAGATGATAATGATTCCAATATACAGGAAATTGGAATGAAACCACTCTTGTGTTTTCATATAGCAACCCT-AGGAAAAAATTACAGGTACAAGTGATACTGCTCtataattcaaatttatgaggATTATTTGGAAaggtaatttatattttgtttatgtaacacaaagaaatttaagtcatatgctatatttttattttctatgggTAAATAAAGAAACCAGTATAAAGTAGGGAATGTTAAATTGGAGACTTTTCTGGTAGTACTGTCAGTGCAATGGCACTTAATGTAGAAATGCTAGATCCTTAACCACAGAATTAAACTAGCTCCCAAGAAATAGGTTAATAATAGATGTCCTtaagtcaggcatggtagcacatgcctgtaatcccagcattcaggaggctgaggctagaggattattgcaaatctgagaccagtctgggctacaaaataagtccaagggcagcttgaactgc--atattgagaacctgtctcaaaaaagataaaa------aacaaaagaaagcaaag-------aacccaaaacaaaacaa-------------aaaatagatgtctttATGTTCTTT---------GAACAGTCAGTGCTGACCTAATATTGGATGCAATTCTAGGA-------TTAACTTGCATGTCAATAACTAGCCCTACCAACTACCAGAGACATTT---ATTTGGTGT----------------ATGCTCCTGTTTC----CCTCCATAGTCCAAAAAACTTTTGGATTCTCAAATCACCTCAGGAGTGGAC--------------------AATATG-TGGTAAGGACAGGACCTTAGAGATTTAGTCTGATTAGAAGATGAATTTTC--TGGCTGAAAATCAGGCTGATTCTTTTAGCTGTT-------------------------AAAATGA-----CTGTCTCCCAAA----CCCTCA--------------------------CCCCTTCATTTATGATTCATC-----TCACTAAGGGACGGAA--------TCCCACCATCTCTAATTGAGTGGAGACA--------------------TAAAG----------------AGCAGG---ATAGATTTCCTAATTCAAATATATGAAT-GTTAAGACCTTTGCCAA----------------ACAATTACCTTGACTCCTTGTTCTGAAGGGCAAGATGCTGGTGGGTGCCCAGACCAGTCACTTGTTTGATTTACACCACAACAATGCAGCTAAAAGCAAAACTCCCCAAAACATTACggttagaaagaaaaatgagaaacaga--aagaaaactggagCTTAGA-AAAAGAGTA-----GCCATTCAGATACAACTACAG--CAGAAACTCTAGGATTGGTCTATT-CCATGGATTCCTTAGAACAAAGTCCTTTGAAATCTGTGACACCATTTTATTCACATCAGATCTCTGTAAACTAGAGAGATTAGAT

a score=38397
s chr3           106766982 2406 + 160039680 AGCTGGACATTTAAAATAAGTTTCTTATATTTTGC---TGCCATTTTAATAAAATTTTGGAGAATAAGTAGCCAATCCAATCCAA--TATGATTTATTTGAATCTTCTTTTTATTCTGTTAGGGCTAAAGCAATGATTTTATGTGAGTTGGTAAAGAATGGA--ATAGAATGCAGCAATTTTTGTATCAACTGGACTAACTCCTATACCTGCCTGCCTCTGAGAGCAAAGACATTCTTTGGACTTTAGAACTGAATATCTTAGA-----GTCTGAAACCTTTAGGAAAGATA-TACTTGTTTCCAGGGTCTAGTCTTTCAGTCTGAC--------TCATCTGAGCAAGATTCTTTATGTACTTACTTGTGTCTGGATGAAGTCCCATGCCTTCATAGTGCTGTTGTCAGAGTGATAATGTTGGATGCTGTCATTCAGACCCTCAGCCACTAAAGTGTTGAGCTGTGGCAAATCATGATGTACCAG----AGAAGACATAATAAAAACAAGACGAATTCAAGAAATAAGAAAATTCTAGTAGACCAA-ATTGATGCCCCATCCTCATCAAGGAGTT-----AGAGCTATGAAAATGGGGTTTGGGAGATTA-----TATAAGAAGAGAAG--CTGAGGATTATGTGGGATCTAAGGAAGATATACATAATTGACTTTTACCCTTCCAGAACTATAGTTTTACAAAGAAAAAAGTTAAACAACCAAAGCCAAGGTTATACATTACTGAGAAGACTAGCAGAAACACAGAGAAACATGGCCAAGA---AGAAGACAAACTTGCTTCA-TCTTCT----------CTTTAAGGCATCATTCAAATA---TAATCTTCATGACATTTTT--TCTCTCAATTGCAGTTGATCTCTCATT-------CTCTTACTTCATTTGTA--TAACTTAGTACTGGTTTGGTTTTACTAACTTCTCCACTGTGTATTCCCCTTCTCAGCAATAAGAGAGGAGGTCATGTT-TTCATAACTTACTTTTTGTTCATACACAAAGAGCAGGATGGCTATGGTCACCTCAGCAAGGAGAATAATCAGCAGCAGAACAAAGAACTGTGATAAAGCAGAAAAATTATCAAAGCATGGATCTGCTTCTGATCTACCTCTCTCTGCTTTGGTGG----CAAACAGGTCTAAAAATATGTGTAT-GTGTGCATGt----gcctc----aagtcaagttagcctgtggggatacttgtc-----------aggggttgttttt----atgttgactggtatgggagggcccaaggcactgtgggtgcacttttcataggttgtcatatgagtaatatGTAATTGATGTGTAGAAATATAACAAAAACTTTTTGTATAGTTAACATAGACTAATAAAAATGTAAAG--TTTACAGACACACATATCCTTATGCTTGATAATTAACA----TGAAAAGAAGA-GGTGAATATCATTATAAGTTTGGTTTCTTTTATAGTC-----TTCCTATCAAGAT--GACCTTCCTCAAAGAGAGTGACTCTTCTAATGGCAATACTCTCCAAAG--GAAAGGATGTGTGTGGCCAATTGAG------------------TGGATAAGAGATAGAATA-----------------GCATATAGTATAATGTATAATAGTATGTAATCTG--------TGTGTTTATTGCCCCTCTGCTCttttttccagaaacagagat---tctttgtgtaaccctgactgt-----------------------------tctgtataccttgctctgtaggctaag---------ttggcaccaaactcagagatccacttgcctctgactcct----------gaatg--ctggaact---aaagacatgtgccaccactgtgtgactCACTGCTCTT---GATTGTAGGTGTT----------TCCCAA----AAGTAATATACCATGAAACATATTACCCCAAATTTGAGCCATCATCTACCCA------AACTCAGAATATCACAGCTGCTACAATGACTCACCGACATAAGCAGGCACTTATTTTCCTTGATTGAGCCCATGCAACCCAAGAAGGCAACTACCATGATAATGGATCCCACAATGACCAGAATGTTGCCAAGTGTCAGGAAGGGAAGGTTACGGAAGAGTACTCCATAGGTATTTTGGACCAGGAAATAGATGCCAAAGCCCAAAATGCAACAGCCACAGACCTGAAAGGAAGAAAACCATTGCATTCTAAGGTTAA-TATTGTTCTTAAATATCTCTTTATTTATACTCTCACCTTCTTGAGATCAGTGTTACCTGGTTTTGCTGAC----TCAAGACTCATGACTCAAGACTCTTTACTAAGTTCCCCACTATCATAATAGAAAGGAAATACTGGTTTCTTCATATAGAATCACACTGATATCTTTTACTACACACTTCCAGATACCAAGAAAAGATTATC------------TACTACCTTCACTATATAAAAGCCTAACTTAATACTTTAGCTATTCT----CTTATCCACTCAATTGGCCACACACATCCTTTCCTTTGG------AGAGTATTGCCATTAGAAGAATCACTCTCTTTGAGGAAGGTCATCTTGATAGGAAGACTATAAAAGAAACCAAACTTATA
s HiC_scaffold_1 117285528 2547 - 233722169 AGATGGGAATTCAGCAGAGACGTCTTGTATTACACAATTGCtggcttgggaaatttttagaaaatagg----cAAACTAACCTAGATTATGATATATCTAGGTTTTCTTCATTGCTTACTAGCTTTTAAACAATGATCATTGCCAAGTTGATAAAAGATgaacaagaaaatgaagataacTTTGCACCAACCAGACTGACTACC---CTCTCCTGTTTTTATTGCCAAGGAAAT-------ATTCTAGATCTGAGGATCACagacaatggactgaaacttccaaaaaaaaCAGTACTCATTCTCAGGTATTAAGGTTGGGAAATGAAGGCTGGGATTATCTAAGGAGAATTCATCA-GTACTCACAAATGACTGGATGGAGTCCCATGCCGCCTTTGTGCTGTTATCTAAGTAGTAACGGTGGATGCTCTCAGTCAGGCCTTCAGCCACATAGCTATTCAGCTG-GGTAGGTTATGTT---CCAAGGCAAGAAGGTATTGTAGAAAGCAAGTGAGTTCAAGTGA-------GTTCTAGGGTAGTGAGATCACTTCTCCCTCCCTTCCAAATGCTTTCCTAAGAACTATGAAAGTAA----CAGGAGAGTACTATATTTAAGGCAAGAAGTGCTGATGATAAAATAGCATTGAAGTAAAAAGTATGCAGTgggctcttgtctttctagaacTATAGTTTTGCATTGGAAGGAAAGAGGTGATTAGAGCAATCACTATCCTTGAGCACCGATACATTCTTCATGACTAATGAACAAGGAAAATACTTAGAAGGTAAGCCTGTTTTACTGTTCTTTCCAGTCACCTTTCAAGGAACATTCAAATACAGTaacttttataacatttttatttccctaattACAATATATCCTTCTTTGTACCATCCTCCACTTGATTCCTACCTGTTATAGAATTTATTCTGTACTAC-ACCCTCTTGACT-------------TTCTGCAATATGACAATGATTTGTGTTGTTTATAACTTACCTTCTGTTCATGCACAAAAAGCAGTATAGCCAATGTCACTTCAGCAAGGAGAATAATCAGCAGCAGGacaaaaaactg--ataaaagaGACATATTGATAGT---TATCTCAGTGTCTGACCCACAACATCCACCCAAGGGAAGGTCCAGCCAGGTCTCTGCACATAGgcaaagtgttcctttttctgccTTCTCAGAGTTTTGTAAGCTTCT-------cttgttttatgaaaaatatgtgTTCTTTTCCCACAATTACATTATAAAAGGCAGATCATCAGTATTGTGACTTTGCTCTCTGT--------------------TGTGCATTATGTTCACCAAAATAGCAGGTACATAATACATATTCAACATTATCCATTGAATAAACAAAGCATTTAC-------CACCTACTGATATCAACCTATTGAAACGGTTgagcaaaagacagcaaatgaaagcatgtgttt--ttatttttatgattggtATTTTCTA-CTAGATCCAGGCTACCTGAGAGAGAAAGATA-----AATGGTGGTG------AAAGTTGAGAAGTAGCCTATGCCAAATGGGGAAAAGAGAGGCACTATTATGGTTTAGACATGGAATGTCTTCCAAAATTCTCATGCATTTAGAAGCAGAacttttagaaggtgattggattacagCTGTCTTCAACTTACTGTTGAAAGTTGGTACCTAGCTGGAGGTGGGTCATTGCATGACCtgaagggtatatctccctctccagctgcttcttcctctctctgATTCCTGACCCATAACCTGAGCATGATTCCTTCACAGTAGGCCCTTCCACCATTCTGTTTCTGAGTTTCATTCTGGCAAGGATGAACTGAAActcctaaaactgtgagccaa------gtaaacctcttttcatttaaattgtgagtgttgaaTATTTCATCCCAGTactgagaaagtgactaagacaggctGTAATCATAGTCTCAAC--TCATCTCCCCCTCCCATGATTTAGAGCACCACAA--GCTGTTAGGACTTACCGACATAAGCAGACACTTATTCTCCTTGATAGAGCCCATGCAGCCCAGAAAAGCAACCACCATGATAATGGAACCCACGATGACAAGAATATTCCCCAATGTAAGGAAGGGTAGTTTATGGAAGAGAACTCCAAAGTCGTTGTGGACCAGGAAGTAGATCCCAAAGCCCAAAATGCAACATCCACAGAGCTAAAAGGAAGAATCCAATAACATTCTGAGTTAAAGTGTGGTTCTTGGGTATCTCCTCATTCACATTCTCAATTTGCCAAGATCAAAATCACCTCCTTTTTTAGATTCAGTCAAGACTC-TCATTAACAACATTTTCC--AGTTTCACCTAGtcctagaaaagaagaaattcttgTATTTTCACATGGATTCTCACTCAGATCTTATCCTACCCACTTTCAGATGCCAAGGAAAGATCACCCTGTGAGCCACACAATACTTCCACCATATGCAAA-CTAATTTTATGCTTCAAATATCCTACTCCTTATCC-CTAAATTA--CTTACACATGGTTTCCTTTTGAAAACTAGAGGCTTG----TAGAGGAGATGATTCACTTAAGGAAGCTCATCTTTCTcacaaaaatat-acagaaatcaaACTTATA

a score=7104
s chr3           106770374 402 + 160039680 TTTAATACCCAAATTGTAGTCGATTTGT--TTTACAGATGCCAGCTATTTGTAATGCATCCCTAAATCCCCAGAGAGTCTGCACAACTTCATTATTACTTGCACTGATATTTTTCAATTTTGTAGACTTATGGTGTCACACAATGGCAGAAAGTGAGGAAATTATTACTGATTTGTGCCTAGGTAAAGTGTTCTAGATATTACCCAGGCATGCACAGTTCACATTCTGTA--CTAT------------------ACTCTTCCTTAAGGAAGG----------ACAGCTTAGCT-----------------------------------------------AGAATGAA-----AGATTAT-----TATTTCA------------------GATATTTCAAA-------------------AGGGGG-------------------------------TACTTACCCAAAAAAGCAAGTTAAAGATAAACAGAACATATTTCAGCAATTTCAGGCTGCTCATGCCCATGCTGGGATAGTA-TGCCCTAAAAAACAAAAGGA
s HiC_scaffold_1 117288200 556 - 233722169 TCTAAAACCTATATTTTCATCTGTTTCTCATCTGTAGCTGTCAGCTGTTAGCA--GCAGTCTGAAGACTCAAAAGAGATACAATATCTCCATTAATAACCGCACTGCTATcttttgaatttgtaatcttatCCTATGGCAgtatgggaagaag-gaggaaattattaCTCCTTTCT-TCTAGGTTTGGTGTGCAAGCCATGATAGAAATATACATGAGTCTCATTTCATAGactattattttacatttctgtttattattttctgagagagggtctcactctATAGTTCAATTCAAGCTGgactttaactcactatgtagcccaggctggccttgaattcagggtGAATTCTTAGATTATAGGTGTATGTCATCAGACCTGCTCATGGAAGACTCTTTAGAGAAGTAAAGTGAGCTTACTAGGGGAAAGGTTAGCTCAATCATGCTCAGAAGAAACACACTTACCCAAAAGAGCAAGTTGAAGAAAAATAGGACATACTTCAGCAATTTCAAGCTACTCATGCCCATGCTGTAATATCCTTGCcctaaaaaaatagaaga

a score=50081
s chr3           106787442 2926 + 160039680 TATCATTT--TACTACCCTAAAATGATAAAGAACTTTGTAGTAAATGGTATTATTCTACTTTCGGAGAATGGACAATCAGTAGAGAAGATTTGCATCTC---TACCCCAACATAGAGATGAATGGATTATGTTGTAAGTTCTTACCTATTGCT-TTTGGAAATACATATTTTCCTCTTTATCAAAACCT-----------TTCTTCCTAAACCAAGTATCCAACCTT---------CCTCTTGTCCAAGAGCAGCAACCCTGGAGGCCAGCTTTATACAGGTGTCTAGTTTGACCCAAT------------GCAT---ACACCTAAAGTGGTAGCTAGTCCTGAAACCATCCTGAGGGCAAGTTCCTAGTATAAAGAGCAATGTCCTAAGGGCAGATGCCTAGTCTACAGAGCAACCTACAAACAGTGGATGCTTGTTGGTGTATAAAGTGCTGTGAGCTGATTATCAGCAAAAGCCAAACCACTATAACCAAACCAATATACTAGTCATTGGATAGAAACTGGAAGGAGGGGAACGGCTATAACTTCACAAAAAGCTTTACCTTTCCTTCTGATCATGTGAAATATCCAGGCTAGAAGGAA-----------TCTGTGCCCTAACTCAAAGCCACATTCAACCAAAATTATTGTATTTAAGTCTCAGAC-TCTGCCCTTTGATACACCCAGCACTTGTCTGTTGAGTAAACTTGCCATATACTTTCAGTTGCCTAGTAGGAAAAAGGGCTTGGTGCTTCCTGTGACCATGTGAT-----------TAGTCTCTCTTGCTTAATTTCATTTCTACCATGCCTGTGGCAGGAAGTGGGGGAGTAATACTTCTTTGA--GTACATATGTAGTGCCTTGTAACTGGAAATGTTAATGGTTCCAGTCTCTATAATACATTCATA---------------------GTAGTC---TTCTCTCTGAGGGAGTCTTTGGAAAACTCCTGAA-CTCCTGTATA-TTGTGTGCACTCTCCCTACTTTATAGAAAAGAGCATATTATTTTGTGTTATGTGTGTCCTAATATCTGCCCTCCATGGTAATCTCTTTGTGATTGACAACC---ACATCCGTTAACTTTGTGTTTCTAGAACCTGAGCACAGTGCCTGGCTGTTGGGACATTGCAGGGTAGTGGGGAATGAGGAAGCTAAGCACTAGTCTGAGGCT-TCTAGGCAGTCAG-----------AGGACATAGAAGATATCAAAACAACAGAGGTTTTCCTTTATATATTTGCCTCTTGCTAACA-AAAAACTTGAAATCCTTTGAG-TGGTAGTGAGGTAGTTGTGTTGGCCTAGGCTGTGAATCACTTCCTGTGAGCATAAAGATAAGCAAACATCATATCTAAAAGCAAAATAACCTTAACTGGCCCACACAGGAAAC------------CACATTTCAGTTTGGCATCTGCTCTTAATCAAC--CAGTTTCAAAGCAGTGAAGATTTGGATCGAGATTGAGAAAGCAAAACATTGCTCACACAGCAGATAAAATTCTTCTCTGGCT---CAATCTTCTAATAGA--------TATGAT----------TACCAAGAAAAGCTCCTCATGGAAAAAACTATTACT---GGGCAAATTCTCCATTCTTCTTCATTTCTCCTCTGTATCAACAGT----------ATACTGTCAGACATCAAAGGGTGCCTAACC--CATGGTTTTTAACTTAGTTCACTTA------GGTCACTATTTATAAACATAAGGTTTAGTAGCCTCTGAGGGTGGCTCTGACAAGCTGCAACTAACTCCCAATCATCTCCCTTGAATTTTAGGTGAGAAAATGTGGACATGGATACTTTACTTTCTCCCTTTTAGATTATAATCAAATGAGCTCTTCACAGCTCTTGGACCAAGAAAGACCTGATACAGACATTTTGTATTG--ACCAAAGCTTGACTATCATTTTGCTGAATACTTACACCCTAGA-----ATGGCTTGCAAGTTGGAAACTATTACTGTATCAAGTTATGTGGGTTTCCTCTCTGCTGCACATTTTATGTGAAATTTGTCAATGTTCAAGCTTTGTGTATCACAGACCATTTAAAGTGAAGAAAGAAGCCCTTCAGATCACAATGTTTACCTTCCCCCAAACTAAGCCATAGGAATAAAATACATGAAGTACATTGCAGAACACCTATGTTGCAGGTTTTTTGTATC------------TATCTTATATCAAAACAT---GACATTCTC------AGCACTAACTTTCCTTTAAAATGTTTTCAAACAAAGACAA--CATGTCTTCTGGCTACTGTTCTAAATCACTCTGGTTATGATTTTCCTCCCTGCTCTAAAA--TGAAACTTCAAGTTTTTGAAGAAAAAACAACATAGAAGATCTCCCCAATTTCATCTCATCTCACCTCAAAAACTTCAAGCATTAGAAACCACCATATACAGTAAGCAATTCAAGTGGCATAATAATGTAAGCTTATGAATACTTAGGCCCAAAGAGATATCAGAAAATAAAACACCAATTAAATCAAAGTATTTCTAGCCCAGTTGCCTAAGGGAAGTGCTGAT-----------------CTAAATATTTGTAAACACATCACATTTTAAAGTTACTAAAGGGATGTGTGGAGACTCTCAAAATGCTATGTGCCTT--ATTAGCTGATTTAGAGCTGTT----------------AAAAGTCATAAATCTTACCTTTTGAAGGCAGTGTCCCTCAGTACTTCAGGTAGAATTCACTGATTATCTTTTAGGTGGCCAGCACAG--CCTGTAACCCAGAAGTCTATGTCTATTTGTGTAAAAGGAGAAGTGAAGAGAGAAAAAA-TACAATCATGCTGTGACGACAGGAAACCCAAGCGAGAAGAGTGAGGAAGTGAGACTGAGTGTTCTCTCTTAGGCTCAGATAGTCAACTGTTCCTCAGTGAACTTGCAGAGGCTTCCACTCCCAGCCTATTCTAAGCTGGTTTCTGGAAGCTAAAGAAGGTCTG----------------ACACACCAATCT--GAGTTCTGGTGAACTTTACAGTAATTTGAGTGATATTTCCTGGCCATAGAACAGTGCTTCTCAATTGAAGCAGCAACTACAAAATACCCGTGGGTCTGTT
s HiC_scaffold_1 117300237 2917 - 233722169 TATCATTTATTAATGCTACTAGCTGATGAGGAACTCTACTGT-------------CTCCTTTATGA-AATGGATAGTCAATAGATAAGA----CACCTTAAACAGCCTCACACAGACATTTATTGTCTCCACTCTGAGCAGCAGCCACTTGATCTTTGGAAATGCATATCTTCCTCTTTTCTAAAAACTACTTCCAGACTGTTTTCACAAACTGATCA-CCAACTTTGAGCCGCGATCTCCTCTGCACCAGCAGCCACAC-AGAAGCCTGCTCTGCACAGCTGTCTGACTTCTCCGTACTACTTTGCTTCAGCATTCTGCAGCTCCAGTAGCAGCTGATCCTGACAGCTACTTAAGAG-AAGTT----------------ATGC----AGCTCAGAGGCC-------CAGAATGATCTACACAA----------------------------TGTGAGCTGACTaagaacacaaacaaaaccaCTGCAACTGAATTAACATAGAAGTTCCTGGAACGGAAGTTGA-GAAAAAGTGTGGTTCTAACTTCACAAAACCTCCACCCTTCCTTTCTGTTCTAAGGGAAAATTTATGttgaagagaaagaaatctgCCTCTTCATCCTCATTCAAAGCCACATCCTATCAATGCTGTCATGT---------GGACATCTGCCCAAGGATAAAGCAAG-ACCTGTTTATTTGGTGATTTTGCCATCCACTTTCAAGTGCCAAGTAGGATAAAGGGCTTTCCAATTCACATGATCTTCTGACATGTTATactgtggtttctcttgcttattttcatttccaaagtGCCCA--------------GGGGTTCAATCCCTTTGACTTTGTATATATAGCATTCTGTGTCTGGAA-TGTCATTACACCCAGTCTCCATAGCAAACTCATACTCTTTTGAAAGTGAGCTCAAGCAGTCACACCCTTTTCCATGGAGTCtttgacacattttaaaatcttctttaaaCTTGTACACATTCGCCTGCCCTTATAGAAAAGAGCATATTGAGTTGTATT-TGTGTATTGCTGTGGCAGTTCTCCATGAGAGACACTTCGATGTTGATAACCGCCACGCCAGTTATCTTGGTGTCTTCAGAACAAG-GCAGAATGCCTGGTCACTGGTATGTTGCAGAAAAGGAAAGGATGAGAAGGGACAACAAGAATCTGAGGGTCTCTGGGTAGTCAGGCGTTATCCAGAGGGCATAAGAAACTAAAGACCAACagaatgtttcctttctttttgtgcc-CTTATTGATAGAAAAAAGTAAGGTCATTTAAGGTGGTAACAA--TAGCTGTGAAGGTCTC-----TGAAAAATTTTCTGTGCATATAAAGCCCCCCACGCTTT-CATTTAACAGCTAACTATTCTTAACTGGCCCACACAGGAAATATCTCCGGAAATCGTGTTTCAGTTCAGCTTCTGCTCCCTTTTAACTACAGTTTCAAAATAGTACAGATTCCATTTAAGAGTGAGATAGCAAAATATTGTTCATACAGCAGCAAAGGTTCTTTT-TGGCTGACCTTTCTTCCAAAAAACTTAGAAGTAAGATATTTCTTATCTCCCATGGGAATTTCATAGGCCCAAGAGTAATGACCCAAGAGTAAAACTTCCTTTCTACTTCAATACT-------AACACCAGTGCTTTTCAAAATGGTATCTGGCCTGAGGAGGTATTTGACTGACATAATCAATAAGCAAATACATTAAAAGTCtggtatttattttcaaattcgaAGCTCAATAGTACCTGA---------------------------------------CATGTAGATCTTGGAAGAAGAAATAT------------------------CT-----AATATAA-------AGCTCCCTATAGT-----GACCAGCAATTAC-TGTCATGGTCATCAAAAGTCAGAAGCAAAGCTCGACTTATATTTTGTCAACTCTTTGTAACTTCATTAGCTATAGCACATGAATTGGCAATTATTGTTGAACCAAGATTTGTGGATTGATtttcataaatacatttaatat---atttatcaatattCATGTTTTGCATGCAATA---------------ATAGGGGAGCTCTGCAGATCATAATATCTCTTTTGCTCT-----------TTGAAAACCAACATATTCAGTATCCTTAGTGATATCTAGCTTTTA--TCGCTTATATTAAATTTACATAGCATCTCATGTTATAATTTTCAGATATTCTTCCATATAGtatctctttatttttgaaaatttctcaaatgaagaagagcTACAACTCCCAGCTGCCTTTCTAAATGGCTCTG----TGAGTTTTCATCccactttaaaaatcacaagatcaaTTTTCTGAAGACAAAAGCACATAAGAAATCTTTCCAACTTCATCTCA------CACAGAAAACTCCAGCACCAGAAATTACCATACCCAGCAAGTAATTCACATTCTGTAGTAATTAAGGCATGTAAACTGCCAGACCCAGAGATACAGCAGGTAATGGGAAACTGGTTAAGTTAAAGTGATTCTGACTTGACTGCTT------CTTGCTGATCTTTTCTACTTGCAGCACTAAATAGTTGTGAA-ACAAAAGACT------GTACTAGAAAGATATAT-GAGACTCCTAAAAAGCTacctaccttacacagaattatcCAGAGCTTTGCACTCAAACAAGATTAAAAAATCAT--GTCTTACCTTTCACAGGCACCTTGCCTCAGTCCGTCAGGCAATGTTTGGTTATTATCTTTCAGCTGGCCTCCACAGGACTGGTTATACAGATGGTCA-GGCTATTTGTGTAAAAGgagaagtaaagagaaaaaaaaccgtGATCGTACTGCGATGAGAGGAAG-CCAGATGAGAAGACGGAGGAAGTGAGGCTGAGTTTACCTTCTTAGCCCCAGAGATTCCACCCATCCCCCAAG-CTTTTTAGCCACTTCCTTCAGTAACCCACCCTACACTAGCTTCTGTGAAACAAAGAATACTTGGAGACCATGTTTGTTCAGGCACTAGTCTGAGAGGCCTGGTGGATTACGCGGTAATTTGGGTGGTGATTTTTGTCTGGAGAACAGTGATTCTCAACCAACATGGCTGCTCAGAATTACCTATGAAATTGTT

a score=5226
s chr3           106818075 94 + 160039680 TGTTCTCAGAATTTT-ATTAGGTGGAATTTGGGTGAGAGAAAACCCTGAAACAGTTGTCCACCTGATTCAGGACAACTGGTATAGAGGAGCCTTT
s HiC_scaffold_1  54412233 95 - 233722169 TGCTCTCAGAATTTTTATTAGGTGGAGTCTGGGCAAGAGAAACCCCTGGGACAGCTGCCCACTCCGTCCGGGGCACCGGGAGTAGAGGACCCTTT

a score=85422
s chr3           106821088 2945 + 160039680 ctacaaaactatcttttaaagtg-actgagaatgttgaatgtctactagaaat----tagag-----gtttcgccacattcttaccagtatttggtgctgtctatgttctagatttttggcccttctactagatgtgaattggccatcttatcaat-ataattttgta-----------------tttatattCACAATTTTATACTGAGtacttggt-taatgattttcttcttactagacagtgagtttgatgatagtaaggaatttctctatgatttttttcatgttttcatctcttatgtctagcagagtaccttgagcatattagaccttcgataagtattCAAAGAAATTAGTCAAAATCATATCACTCCATCTTGATTATGGGCTTTTATTTTTATAAGGTTCTATGATTTTGGGGGGATGCAGGACAGGATTTGACCTACTTAGACCATGGCATGGAA--TACTAGCCCCCAAACTGTCAGAACTCAGAAGCATCGACAGCCATC---AGAGGCAGCTG-CCA-----TATAGTACTTTTCTTTTTCATGTCATATGAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACTATCACCGTTTGATTTTCCCAGGATAAGGTCATCATACTTTGGTTTCT------GTGAAGGACACGATTATAAAAGCATACATAATATAGCTGTTTCTACTTTATGCA-AGAATGTGAACAG--AATGGTTTTTATTCTATGCTCTCTCTACTC--------------TCTGCTCTATGAGTGAAGAAGAGAAGAGGACTT----CTTTAA-----ATCACATGAACGAAGATAATTTAAAATAAGAACT-----TGCAGCTTTATTCTTTCCTTTTCCCTTACTTGGTATCATCACTTCATCAGGAGC-------------AGAAACATATGAGCTAGAGGAA---------------------TATAAAGATGGAGAGAGAACTG--------CATATTGCACATTCTTCCTGAGTGTATTCTAGTAATCTTGTGAGTTTT------AGACAGGAAGGAAAATCTAAAGGGAAGTGCAACAGAGAAAACTAGGAG-------------GATGTTTGTGAAATGACAAAGAGAACAAGGTGAGACAAGGATGCAAGACAGAGTCCCTTCTATTTTAAACAGTGACAGTAACTGTCATTTAAGACATTTAAAGAAAT--CTCTTT-TCATATAAATTTTATTTTCCTCTCC--ATGAGTTTTGTGTGGTGTGGGTCATTTCTGAATTGTTTT------CATGGCATTTTAAAGAA-------TTTAAATAGGAAGTTTGAGATTCTCTGATTCCAAG-------GTTACAGGTTGTGAAGGCATAACCAGGAACAAGTACATCATCTCACAATTTTAAACAGATATTATAAAGGCAAATTAAAAGATTTTTATCTAAGGCTTTAATAAGTTATACCCATTTTGGATATAACAGCACAAGGAGTTGATAAAGTACAAAACAAACTACTCTGCTCATGTTCTATCCAGTACCAGAGAGTGTAACCAACTATGTGTA--------TGATATGTGTAATTTGGGGA---CTGTTGGGTGAGTTAAGGAATCCTAGCTCTCCTCTTC---AGTTGCACTTTGATGAAAGCCACTCACCAACAACAAAGCACTAAGTAAACAGAGAAGCACTCCCAACTCCTGCAATGGTTCTAAGGATGAACCCACTG-----------------TACTAATTTCAAGGTCTGAATCCTG--TATGAAACTTCTTATGGCAATTATGGAGAAAATATATGGTTGAGGAAGGTAAGGTGAGA----AAAATCTATGTATAGGCACATAAAGCACCATGTGGGTGTAACAAAGGGCTTGTTACCATGAGAACTCAAAAAGCCTTAAGTAAAGCCAGGGATTCTGCTTCACGGGTCTGACTTTA--TATTTGGTCTAGCTTTCTCAAGTCTCAGCTTTTTTCAT-TGTAA-ATGAAATAAAAGTTTGAAGAAGAATGTAAAAAATGT------------AAAAATCATACAAATAAA-ATATTGGAAAACCATTGACTATGCT--GGGTTTTTTGGTAATATTTAAGTTTACTACAGAAT--ACTCTGCTTAG-AAGGACCACTGATAGCAAATATAAATCTCTCTTGCATTGCCCTGAACCATGAGTGGTCATGAAATATGGTGTTAAAAATTGATCTTTCTTGCCCTGTGTCACACCTA---------CAGCCTTTTGTTAATATGCTGATCCTATTTT
s HiC_scaffold_1 117334869 2965 - 233722169 ctgcAAGGCTACCTTCCAAAATGGATTTATCATCttatattcctaccaacaatgaaaTAGAGTTCTAGtttttccacatcctcacca--acttGGTGTTGtcagtgtttt-gatttttgactATTATAATAAGTACATCATAGCCATCTTACTATTTACAATTTTGaaaagttataatttttaaatttatacttatagttttatattagttaatttttctgatattttctttcctctaagACTGTGAATTCAGTGAAGAAGAGCAAATGCT-TATGATTTAT---ACACTTTTATTATTTA----------AGTACATTCGATATAGCAGACACTTCATGTGTATTTGAATGAATTTTGAACAATCCTATCAGTTTACTTTGACTATATGATTTTGT----ACAAGAATCTAAGACTACTGGAGATGATGGAGCAGAATATGACATACTTAGATCATAACCTGGAACATAATACACCTAAGACTGTCAGAACTCAGTCATGTCCACAGTCATCCTCAGAAGCATCTGGTCACCTGTTACAGCCCCTTTCCTTTTTGCCTCATTTAAGGAAACCTGgcttcttacacaagcatttctTCAGAGCTTCATGGATGTCTCTATTTCTTAAGCTATAGATGATAGGGTTGAACATGGGTGTTAGGATGGTGTACAGAAGAGAAACCCCCTTGTGTAATAGCTGGGAAGAGTTGGCAGAGGGAACAAGGTATGTGACTATCAGTGTACCATAAAACACTATGACCACAGTGAGGTGGGATGAGCACGTGGAAAAGGCCTTTTTCCGACCTGTAGCAGAAGGAATTCTTAAAATAGCAGTGAGAATGCAGGAGTAGGAGACCATGATGAGAAGAAATGGAACCAAAGTCACTATTGATGAGGTGACAAATGCAGTGGTCTCAGTCAGTGAGGTGTCCATGCAGGAGAGATGGACCAGAGGGGTAAAGTCACAAAAGAAGTGATCAATTTCATTAGGTCCACAGAAGGTTAGCCTACACAGCAAAACCATAGTGATTGATGTCAGAAGGAAACAGCAGAGCCAAGATCCAGTAGCCAGACTGATGCAGAAGGAGCCAGTCATGAGGACTGGATAGTGGAGAGGTTGACAAATGGCCAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCAGTTGCAGCCAGAGATCCAAAGAAGTAGAACTGTGCCAGACAACCAGTCACAGAGATGGTCTTCGGTTCAGCAATGATAATTAGTAACATTTTGGGAACAATGTTGGATGTATACCAGATCTCCAGAAAGGACAAATTTAccaggaaaaagtacatgggggtgtggaggGGATGGTTAATCAAAACTAAGAGGACAATGAGGATGTTCCCAGAAATAATCAAGatgtagaaaactaaaaatatcataaaaaggGAAACATTTATCTGTAGGATAGAAGAGAATCCTCTAAGCACAAATTCCACTATTATTGTTTGGTTTTCCTGGGGTGGAATCACCATAACACGGCTGCCCTAGAAGCAAAACATCCAGTGAT-AAATTATGTAAAATGTGGAAGGTATTAGCTTACATAGAGAACAAGGAAagacaatgaatttttttttat----ttttcactcagaTTTTCAGAGTATTTGTTATTTGAATGAAGA----AAGAGAACTTTTTACTTTAATGCCTAATATGagacagaaaataatttggaacagAATCTGTGTCTTCAACATCAACCTCTAACTTTCCCTTcctc-atattttcatttcatttggaaCAATATCAGTCTTTAGAGAAAGCAGAagtagaagaaagggaaagagaaatagataggtagaaagacagagaaagagatggagaatCCCCTACCTTATGTCTTTCTTAAGTATATGCTAATCA------GAGTATTTCCAGAAGAGGGGAACAAGatttaaaagagaagaggaatAGAAAGAAAGATGAGGAACACATCCAGAGATTTTTGTGAACTCTCAAACAGAC-------ATCCAAAGATTCAAGACAAAAATCCTTTTCCTTT--------ACCTTAAC---CACTGCATACATTGAGGGAAATGACTATTTatcatatcaattttattttcctctccttcttgCTTCTCAATGAATTTGgaagtttcttgtttgtttttctttccacagCATTATCAAGAAAAAATCTTGTGGTTGCAAGGTTTGAGATTCTCTGATTCTGGGACCAGTTATTACA-TTGGTGAGGCCCAAAACAGG----AGTCCTTTCTctcac-attttaaataaacaacat-cagacccattaaaaatattttatctatgcCTACAGTAAAT---------------------------AGGAG--------------------------------------ACTCAGAATCAGGTGGCCTAAAGTACTATGTATAACCAGTCCTGAAA----TAgccttgggattttttttttgtgagataaG-----CAAGcccacatttttaaaagcctCATCTTGGTGAAAACCATTCACC-TTAAAGCAGAACTCAG--GGCAGATATACCTCATTTGCCCTCATAACACTGCT----ATGAGCATACTGGAATCTGAGCTTTAACTTACTATTCTTGACATATCATTCCTGGCTCTGTACTCCCGTAAAGCAGTTAGGGATTGACCAAGTTGATAAGGGAAGCGAGGAAAGATGAGAAAACCTATATACAGGCAC-TGAAGTTTC-TGTGGGTGtgtaaaagaagt-----------------------------gaaaaattggGGAATTTGTTTCTAGAGTCAGTCTTTAGTCAAGTTTCTTAGCTTCTTCAAG--ACAACATTTTTCATCTATAAGATGGGGCACAAgcttaaagaagaatttaaaatgtgtctAGCATGTACAAAAGATCATATAAATGAACACACTGAGAAATTATGATCTATTATTCAAAGATTCCAATATTACTT--GTTTATCAAGGAATTGCTTTTACTTTGAAAGGGGCATTGGCA-CAAATTTACCAGTCTCTTGCACT--------TTGTGTGTGAACATTAAG------------------------TTACTCTGGGTAACTTTTATTATGCTACCAGCCTTTTGGAAGTATacatatctcatttt

a score=14452
s chr3           106821596 946 + 160039680 CTTTTTCATGTCATATGAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGA---------------------GGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGG---ATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCAT-GGTGATGGCTGTGAGGAAGAAGCAGCAGA--------ACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGG---ATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATG---TTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACTATCACCGTTTGATTTTCCCA
s HiC_scaffold_1  65470285 961 - 233722169 CCTTTTCTAATCATTAGCTAAAG---AACCTCTTATTCAGTAGGTTTTTAAGAGCCTCCTTCACATCTTTGTTTCTGAGACTGTAGATTAAAGGATTCATCATGGGAGTCATCACCCCATAGAACATGGATACAAGTTTG--TCAGTAGCGTTCA-AGTTGTCTGAATCAAGTATGTCTTTAGACTTGGGTTACATGTACATGAAGAGGATAGTCCCGTAGAAAATTATCACCACTGTGAGATGGGCTGAGCAGGTAGAGAAGGCTTTGCTTCTCCCC---TCAGAAGAGCTTATCTTGAGGATGCTGTAAATAATTAATGAGTAAGAAATGGCAATCAAAAGCAGAGGCATCAAAGTAAATAATGTCGTGGCCATAAGCATGATAAATTCATTGTCTGAAATGTCAACACAAGCCATCTTCATGACAGCCAGaatttcacaaagaaaatgaTCGATGACATTATTTCTGCAGAA---------AGGCAATTGGACCACCAATGCAGTTTGCACTGCAGAATTGACAAACCCTGCAAACCAGGACCCAGCTCCCATGGGAATGTAGGAAAACTTGCTCATGATAATGGGATATCTCAGAGGattgcagatggccacatagcggtcaaaAGCCATCATTCCCAGGAGCACACATTCTGTGGTTCCCATGGCCAAGCCAAGAAAC---ATCTGCAGTGTGCAACCAGGAAAGGAAATGGTCTTTTTCTGGGAGAGGAAACTCACCAGTGTAGAAGGAATAGAAGTGGTCGTGTAGCAAATATCCAAGAAGGAGAGGTTCCCTAGAAAGAAGTACATAGGAGTGTGCAG---GTGAGAGTCCAGAATGCTGATTGTAATGAGGGTGCCATTGCCCAGAAGGATAACTACATACATTATTAAAATGAGCACAAAGAAAAGAAGCTCAAGCCTTGGGTAACCAGAAAGCCCCTTCAGAATAAATTCCACCAGAACGGTTTggtttttcca

a score=13654
s chr3           106821605 781 + 160039680 GTCATATGAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA--AACCTTTGCGTAAA--------TATT--------GGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAAC---------GGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCA--------GAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACC----ACTGAGATAGTCTTCT--------GGTCAGCTAT-AATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  56287760 797 - 233722169 GTCAT-TGGGAATCCCTGTCTT-TGACTTACCAGGTTCCTCACGGCAGCCTTCACGTCCTTGTTTCTCAGGCTGTAGATGATGGGGTTCAGCATGGGGGTGACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTTCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAAGTGGAGAAGGCCTTTTTCCTGCCCTCGGCGGAGGGAATCCTCAGGATGGTGGTGAGGATGAAGACATAGGA------GACAAAGATGAACAGGAC---AGGCACCCCTAGGAAGATCACATTGGCCACCCCCATGCTGATCACATTGACAGAGATGTCAGCACAGGCCAATT---TCAAGACAGCCAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAGGGAAGT-TGCATTGC-------TAGAGATGTCTGTACAGTGGCAGTAATACTCCCGGCCGCCCAGGAGCTGATGGCCATGGGCATGTAGGCAGCCTTGCTCATGACCACAGGGTACCTGAGTGGggtgcagatggccacatagcgatcAAACGCCATCATGCCCAGGAGCACACACTCTGTGGCTCCCATGG--CAAAGGACAGAAACATCTGCACAGCA--CAGCCTGAGAAGGAGATGGTTTTCCTGGGAGTGAGGAAGCTGTCAAGAATGAG---------GGGGACAGAGGAGGTCGTGTAGCAGACGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggtgtgtgCAG

a score=17087
s chr3           106821607 908 + 160039680 CATATGAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAA--GCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAA---CGGTCTCAATCAGTGAAGTATCCA------------TGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATG----GCTGTGAGGAA--GAAGCAGCAGAACCAAGACCCAATAGCCA--ACCTAAAGCAGAGAGAA--CCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAA
s HiC_scaffold_1  51302828 907 - 233722169 CAGATATAGAACTCTATATTCTT-CTCATCCATTTCCTGAAGGCCCCCTTGACATCTCCATTCCTCAAGCTATAAATGAAGGGGTTCAACATAGGAGTCACCACTGTGTACATGACTGTTACAATGCGACCAGTAGTCACT--GAATAGCTGGAAAGGGGCCGGAAGTAGACCCATGTAAGGGTGCCATAGAATATGGTCACCACTGTGAGGTGGGAGCCACAGGTGGAAAAAGTTCTCCACTTGCCCTTGGATGAGGGGATCCGGAGGACTGCAGCGATAATGCAGGCATAGGAGGCAATGATGA---------AGGCCAG------TGCTCCATTGATGACAATTGCACCTTCTGTTTGAATCATTAAGGTGTTAAGGTGAGTGCTGGTGCAAGAGAGCTTCATCAGTGGATAGAGGTCACAAAAGAAATGGGGTATCCTGTTGTTTGCACAGAAGAT---------CAGCCGGCCCATGAGAAAGGTATGCAGTAGGGCATGAAGGTGGGAGAGGACATGGCACATAGCCACTATCT-GTGCACACAGCATTCTGGTCAGGATCATAGGATAATGGAAAGGGTGGCAGATGGCGATGTACCTGTCATAGGCCATCACTGCCAAGAGGAAGTTTTCCACGGCTGcaaagcaaataaagaaataagtctGTGCTAAACAGCCCATGTAGGAAATGACCTTTGTAGGGGAGAAAATATTCTGCAGCATCTTGGGGACTGTGGTGGAAGTGAAGCAGATGTCTGCCAAGGCCAAGTTACCAAGGAAGAtgtacatgggggtgtggaggCGAGGAGTGGAGATAATCAGTGTGATGATAGCAAAATTGCCAAAAATGTTGATTGTGTACATGAGCAAGAAAAGAAGTATGAGTGGAATCTGTTCTTCTGAGTGGGTAGAAATGCCCAAGAGAATAAA

a score=15677
s chr3           106821609 930 + 160039680 TATGAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATA------AAGCAGAGAGAAACCTTTGCGTAAATATTGG--GAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTT------TTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAG---AGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAG-GAAGAAGC-AGCAGAA-CCAAGACCCA----ATAGCCAAC-CTAAAGCAGAGAGAAC--CAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGC---ACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACTATCACCGTTTGATTTTC
s HiC_scaffold_1  51409609 926 - 233722169 TGTGAGAAAA----ATACTCTATTGAGGCATTTTGCAAGGGCTTCTTTCATGTCCCTGTTCCTGAGACTGTAGATAAAGGGGTTCAGCATGGGTGTGACCACTGTGTACATGATAGCTACAATGATATCTTTG--------TTGGCAGAACTGCTTACTGTTGGGAAAAGGTACTGTCCAAATATTGCCCCGTAGTACAGAGAAACCACAGAGAGGTGGGAGCCACATGTGGACAATGCTTTACAGACCTTCTTGGCT------GAAGGCACCCTGAGGAGGGTGGCCCCAATGTAGCCATAAGATACCAGAATGCACATAAATGG---CAGAGTaattaccaccactcctattgtAAACATGACCAACTCATTGAGAAAGATGTCTGAGCAGGAAAGCTTGAGCAGGGCAGCAAGGTCACAGAAGAAGTGAGGAACGGTGTTGGCAGCACAGAA---------AGACAGCCGGGTCA-GGAGAAGGGTGTGAGAGAGGGAGCTGGCACAAGACAGGACCCAGGATATAGCCACCAATAAAATACAGAGCTCTTCCCTCATGATGGTGGTGTAGTGAAGAGGGTGGCAGATGGCCACGTATCGGTCATATGCCATTGATGTGATAAGGAAGCTATCCAAGTcagtaaaaaatatgaaaaaatacatcTGGGAAATGCACCCTGCAAAAGGGATGGACGTAAGATTAGTCCGCATGTCCATCAACATCTTTGGGACAGTGACAGATGAGAAAGAGACATCCGTGAAGGCCAAGTGGccgaggaagaagtacatgggggtgtggag---gCGGGAGTCCAGCCTGATGAGCAGGATGATGAGCAGGTTCCCCAGCACTGTGGTCAGGTACATGATCAGAAACAGGGGGAAGAACGCAGCCTGCTGCTCTGGCCCGATGGGGAGCCCCAGGAGGAGGAACTCAGATATGCTGCTCTGGTTCTC

a score=13433
s chr3           106821612 848 + 160039680 GAGAAAGTCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGC---ACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAA-GGCAACGGTC-TCAATCAGTGAA-----GTATCCATGCAGGAGAGATGGATCAAAGGGGCA---AAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTA----AAGCAGAGAGAACCAGTCATGAGGATGGGG----------TATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAA---------GAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCT---TCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTT----GCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTA---------GAAGATGCAAAACA
s HiC_scaffold_1  51331870 856 - 233722169 GAGAATGTTTTACCACT-GCTGAAAAGTTTACCCAAAGCATCCTTCATGTTTTTATTCCTCAAGCTATAGATGAATGGGTTTAGCATAGGAATAATCACCATATAGAG---AATGGAAGCCCGACTTTCTTTCTCTGTAGAGTGAGCTGAGGGGGGGAGTAGATACACACCCATAAGCGACCCATAAAAGAGAAGAACCACCGTGAGATGAGAACCACAGGTAGAGAAAGCCTTCCACCGCCCTCCAGGAGAGGAGATGCCAAACACGGCCCAGAAAATACGGGCGTAGGAGAA---GACAATCAACATGAGGGGCAGAGTGA----GGAACATCAAGCCCATGATGATGATCATCAGCTCGTTAATGTGGGTGTCGGAGCAAGCAAGCT---TCAGAAGAGCACTAGGATCACAATAGAAGTGGGGAATAATGGTGGGGGCACAGAAAGTC-----ACACAGGTCAGCAACAGTG-----TGTGCACAAGG----GCAGGACAATTGGTTAGCAACCAACACATACCCAGCAATAGTATGCAGAGTTGAGGACTGAGGGCCACGCTGTAATGAAGTGGCCGGCAGATAGCCACAAAGCGGTCATATGCCATCACAGC---CAGGAGGCAAT-TGT-----CAAGACCACCAAACAGAAGTAGGAAATATAGCTGTGTAAGGCACCCAGGGTAGGAGATGGTCTGACTCTGGGTATGAATATTGACCAGCA---TTCTGGGGACTGAAGCTGAACTGAAGCAGGCATCCGTTAAGGACAGATTGGCCAGAAAGAAGTACATGGGCGTATGGAG-GTGTGGGTCAGCGCAGATGGCCAGGAA---GATGAGCAGGTTTCCAGCCATGGTGATCAGGTACATGCCCAGGAAGGTGCCAAACA

a score=17534
s chr3           106821619 922 + 160039680 TCTGACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGG-----GAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGC---AAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAG----TCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAA--ACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGG------GAAATATTCAGCTGTAAGATGGAA------GAGAATCCTCGAAGAACAAACTCCACTATCACCGTTTGATTTTCCC
s HiC_scaffold_1  51092670 919 - 233722169 tctgttctcctAGCCAA---TTTTCTCAAGGCATGTTTCATATCCTTGTTCCTAAGGCTATAAATGAAAGGATTCAGCATGGGAGTAACTACCGTATAGATGACAGTGA-----CCACGCGGTTCTTTGTCACTGAGTAGGTAGATGAGGGGCGGATGTACACGGATATTATGGTACCATAGAATAGTGCTACAACTGTTAGATGAGAGCCACAGGTGGAGAAGACCTTGTACCTGCCTCCCCCTGAAGGCACCCTCAGAACAGCACAGGTGATGTAGACATAAGAGATAACAATGAAGATAAAAGGGCTCA---TAATCACAAAGGAGCCCTCCATGAAGGCCAAAAGCTCATTGACAGAGGTGTCTGAGCAGGAGAGTGTCAGCAATGGCTGGACATCACAAAAGAAGTGGTGGATGACATTGGGCCCACAGAAGGAGAGGTGGCCCATGAGAATTGTGTGGATGAGTGAGTGAAGGTGAGAAACCACCCAGGATGCAGTCACCAGC----AGGAGATAACACCTGGTGCTCATGATTGTGGTATAACGCAGTGGGttacagatggccacatagcggtcaaaggccatggcagccaggaggaaACTGTCTGTGATACCAAAGGCCACAAAGAAATACATCTGGGTGAGGCACAGGGTAAAGAGGACAGTCTTTCTCTGTGTCATCATGTTCAGTAACATCTGGGGCACAATGACAGTGGAGAAGCAGATGTCTACCAGGGATAGGTTGGAGAGGAGGAAGTACATGGGAGTATGTAG---GTGG--GCATCCTGCCAGATGGCTGCAATGATGA------CTGAGTTGCCTACAATGTTGACAAGGT---ACATGACAAGGAAGCTGGCAAAAAGCCACAGCTGTTGTTTGGGATCAGTGGTGAGTCCTAGAAGGAGGAATTCGGTCACGTGGCTCTGGTTTTCCC

a score=11033
s chr3           106821621 765 + 160039680 TGACTTCTTACTCAAGCATTT-CTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGA----------------AGAGTT--GGCTGAGGG---------CACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCA--AAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAG--------------AGATGGATCAAAGG-GGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGA-------------AGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTG------CAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  65363887 784 - 233722169 TAGCTTTTCGGTTCAGCATATATTTTACAGCAGCTTTTACATCTTTATTCCTCAAGCTGTAGATTATAGGATTCAGCATGGGGGTCACTACCccataaaataaagaaatcagcTTGTCCAAAGTTTGAAACTTGTCCTCCCCATGCAGGGCTTGGGCCTTGGGTTTTGCATACATAAAGAAGATGGTA---------CCATAAAATATAACCACCACAGTCAGATGAGCTGAGCAGGTTGAAAAGGCCTTGCGTCTTCCTGTGGTTGAGTTCATTCGCAAGATGGTGTACAGAATAAACatatagga------------gaaaaaaatgaccaga--------agaggaagaagcaggaatgCTATGTTTGATATCATCATGGTAATAATGTTGAGGGCTATATCAGCACAAGCTAGCTTGAGGACAGCTAAGATCTCACATGTAAAATGATTGACAATATTATTCCCACAGAAG------------GGCAATGTCATGGCAAGAGATGTTTGCACAATTGAATTTATGCCACCAG-AGAACCATGACACACAAGCCATCAGTGTACATACTCCCCTGCTCATGATGATGGGATACCTCAAAGGGTTGCAGATGGCTACATAGCGATCAAAAGCCATCATGCCAAGAAGTAAACATTCTGTTGACCCCATTGCAA---ATCCAACAA---ACATCTGCACTGCACAcccagaaaaggaaatgtttcttCTCTTTGAGATTAAGCTCACCAGTGTGGAAGGAACAGAGGAAGATGTATAGCAGATGTCCAGGAAAGAGAGGTTCcccaggaagaagtacatgggagtGTGCAG

a score=14514
s chr3           106821623 763 + 160039680 ACTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA--AACCTTTGCGTAAA---------------TATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAAC---------GGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCAT-GGTGATGGCTGTGAGGAAGAAGCAGCA--------GAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAA----TTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAA--CATCTTGG----GGACAATGTTAGAG---GTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  56348858 780 - 233722169 ATTTCTCATTCACCAGGTTCTTCACAGCCACTTTCACATCCTTGTTTCTGAGGCTGTAGATGATGGGGTTGAGCATGGGAGTCAGTACTCCATAGAAGAGGGAGATGAGCTTGTCTGTAAGGTCCTGCTTGTCTGCCCCCAGGGTTCCTTGGACTTGGGCTTAGCATACATGAAAAGAATAGTCCCATAGAAAATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCCTCAGGATAGTGGTGAGGATGAAAACATAGGA------GACAAAGATGAACAGGAC---AGGCACCCCCAGGAAGATCACATTGGCCACCCCCATGCTGATCACATTGACGGAGATGTCAGCACAGGCCAATT---TCAGGACAGCCAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAA---------AGGCAACTGTACTGCAAGTGAGATCTGCACCAAGGAGTTGGCACCCCCAGCCACCCAGGAGCTGATAGCCATGGGCATGTAGGCAGCCTTGCTCATGACCACAGGGTACCTGAGGGGgttgcagatggccacatagcgatcAAATGCCATCATGCCCAGAAGCACACACTCTGTGGCTCCCATGG---CAAAGGA-CAGAAACATCTGCACAgcacatccagaaaaagaaatggtttTCC---------TTGGAATGAGGAAACCATCCAGGACCAGAGGAATGGAGGAGGTCGTGTAGCAGATGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatggatGTGTGCAG

a score=13247
s chr3           106821624 762 + 160039680 CTTCTTACTCAAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAG----AGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGG------CAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAG----------------------AAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCT---TCTG-GTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  51441712 762 - 233722169 CCTTTTACTGAGGATATTTCTAAGAGCTCCTTTCATATCCTGATTTCTTAGACTATAGATAAAGGGATTTATCATGGGTGTTACCAGAGTGTACAACACAGCCACAATGACTTCATTGTCATTAGTGTTA----TTGGATGAGGGGAAAAAGTAGACCCCAATAATTGCTCCATAGAACAGAGTAACCACAGAGAGATGAGAACCACATGTGGAAAAGGCTTTGCAGATTCGCTTGACTGAAGGAGCTCTCAGGATAGTGGCTCCAATGTGGCCATAAGAG------ACCAGAATGCATATAAATGGAAGGGTTATGACTACCACTCCTACGGTGAGGATTACCAACTCATTGATGGTGGTGTCTGAGCTGGAGAGTTTAAGCAATGCAGagaggtcacagaagaaatg-------------tgGC----AGAGTGTTGTCACCACAGAAAGA-----GAGATGGGATAGGAGAAGGGTGTGCACCAGGGCACTAGTAGAGGACAAGACCCAGGACACAATTACTAGCAGAAAACAGAGGTTCTGACTCATGATTGTGGCATAGTGCAGAGGATGGCAGATAGCCACATATCTGTCATAGGCCATTGAGGTGAGAAGAAAACTGTCAAGATCaccaaacaataagaaaaaatatacctGAGAAATGCACCCAGCATATGAGATGGATTGACTCTGTGTCAGC----ATATTCATGAGCATCTTTGGAGCTGTGACTGATGAGAAAGAGATGTCAGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggag

a score=14982
s chr3           106821626 894 + 160039680 TCTTACTCAAGCATTTCT-TCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGG---GCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTT-TTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGA--GGTGGCAAAGGCAACGGTC---TCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAG-------AAGCAGCAG---AACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTG------CAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAG-CTGTAAGATGGAAGAGAATCCTC---GAAGAACAAACTCCA
s HiC_scaffold_1  71378496 896 - 233722169 ttttacaaaagtAGTTTTGTCATGGCATCTTTGACCTCCTTGTTTCTTAAACTGTAAATTATGGGGTTCAACATAGGAGTAAGCACTCCATAAAGCAATGAAATGATTTTGTCTATTTCTTGTGA---GTTTGATGAAGAAGGCTTTAGGTACATGGAGAGGGCAGCCCCATAATATAAAATCACCACAGTCAAGTGTGCACCACAAGTAGAAAAGGCCTTGTTTCTTCCCTCTGCC-GAGCTTATTCTCAGAATAGTGGAAAGAATGAAAACGTAAGAGATGCAAATGAAGAGCATTGGAAT-----GGGCAGGAGGAGAATGCTGACCACCATCATGATCACATCCATGAGCAGTGAACTTGTGCAAGCTAACTTTAGCACAGCCAGAATTTCACACGTGAAGTGATCAATAAGATTC---CCACAAAGGGT--GTCTTCAGAGCAAAAC--------TGCTTTCCAGGAGGGCCGTCTAGGCAGCCCGTCATCCAGGAAACGCTggccatctgaacacaaacctgCCGACTCATGATGATGGGGTATCTCAGTGGGTTGCAAATGGCCACATAACGGTCATATGCCATCACAGCTAGCAGAACGCACTCTGTGGAGCCCATGGCAAGGG------AAAGATACATCTGTATAGCACAGCCAGCCAAGAAAATTGTCTTCTGGGATGACAGCAAGTTTACCAACAAAGTAGGAATAGAAGCAGATGTGTAACAGATATCCATGAAAGCGAGGTTTccaaggaagaagtacatgggtttTTGAAGACGAGAGTCTAAAACAATGATTAAGATAAGAGTGCTGTTACCCAAGAGGGTAATCAGATACATCATGAGGCTGAAGATGAAGAGAACAACTTCCAGCCTCGGATATCGAGAAAATccctccaggaaaaaaaaactcca

a score=14269
s chr3           106821634 794 + 160039680 AAGCATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGA-GAAACCTTTGCGTAAATATTGG--GAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAG-GAAGAAGC-----------AGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAG----AAAAACAATAAGGATGTTTCC
s HiC_scaffold_1  51065096 794 - 233722169 AAGAGTTTCCACAAAGCTCGCTTCATGTCTTTGTTCCTTAGGCTGTAGATAAAAGGGTTCAACATTGGGGTGACCATTGTATATACAATGGATGCCACCATTCC---AGTGTCTGCTGAATAGGAGGATGATGGCTGGAAATACACTAGAAAGACTGTTCCATAGAAAAGAGAGATCACTGTCAAGTGAGAGCCACAGGTGGAGAATATCTTGTGCTTTCCCCCAGCAGAGCGAATCCTGAGGATGGTGTGCATGATGTGGGCATAAGAGACCAGGACACAGGTGAGAGGGACCACACCTGAGAGGGCAGCTTCAGCAAACATCATGAACTGAAATGTATGGGTGTCTGAACAGGCGAGCTTGAGGAGTGGGGTTACATCACAGAAAAAGTGTGGGATGGTGTGGGAGGCACAGAAGG---------AGAACTGAGCCA---TCATCGAAGTGAGTGAAAAGGCCAGCAGGTTGGAGCAGAAAAAGGATGTGGCCACCAGCAGCAGGCATCGTTGAGGACACATGATTGCTGTGTAGTGTAGAGGAagacagatggccacatagcggtcatatGCCATCACAGCCAGCAGGAAGTCATCCAGCAGGGCCAATGCCATGAAGAAGTACATCTGCACAAGGCACCCAGTGTGGGAGATGGTGTGGCGCTGTGTGTGGATGTTCACCAGCACCTTGGGGATGATGGTGCAGGTGAAGCAGGTATCGATGAAGGAGAGGTTGgccaggaagaagtacatgggggtgtggaggtGCTGGT----CAGAGCCAATGGCCAGAATGATGAGTATATTTCC

a score=8263
s chr3           106821638 757 + 160039680 ATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAA------ACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTT---TGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTT
s HiC_scaffold_1 107191388 705 - 233722169 ATTTCTCCAATGCATATTCAAACTCCTTGTCTCTCAGGCTACAAACAATAGAGTTCAACATAGATGTCACTACACAAAAGGGAACAGAGACCGGAATGCTCATGCCCAAA------GAATAGCCTTCTCTGAACCTGTCATAATTAAAGTTAGCTGTTCCAAAGAAGACTATCACCACGTTCAAGTGGGATGCACATGTGGAAAAGGCCTTGCTCCTGCCTTGAGCAGAGGTAATCCTAAGGATTGTTGAGATGAT----GAGTA--ACCCCACAATAAACAGGCAGAAGCTCAGACCAATGATGGCACTGGCCACATGGAATGAAGACTGAATGACAGAGATGTCTAAGCAAGAGAGCTTCAGTAGCAATGGAATGTTACATAAAAAGTGGC---TGCCAGCACTGTCAC--AAGTTTACCAGTCTACATAGCTAGGACAAAGTCAC----------------CAGGCAAACATAGACCT-TTACCC----------------------TCATGAGTACTGGATATTGAAGAGGGTGGTAAATGTCCACATAGCAACCATAAATCATTGCAGGCAGTCGGACACATTCAGTGCCAACACAT--TACAAAGAAGATAATCTAGAAGATACAGTCCTCGTAGGAGGTGGTCTTCTTTTCCCAGGTATTTACAAGCATGACCT---GAAATATAGTAGTTATTTATCAGATGTGCAAGAAgctcaaatttctgaaaaaataatacattgaaaTGTGGACTGCAAGACT

a score=16029
s chr3           106821638 877 + 160039680 ATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAA--GCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGAC---CCAATAG-----------CCAACCTAA-AGCAGAGAGAACCAGT----------CATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAA--TCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGC--ACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAA
s HiC_scaffold_1  51159052 877 - 233722169 ATTTCCTCAAACCTCTCTTCATATctttgttcctcaggctgtagatgaaaGGGTTCAGCATGGGAGTCACTACCGTGTACATAACTGTGGCTACCCGGTCCTTCACCACTGAGTACA--TGGACAGGGGTCTGAAATAGACATAGATGACACTCCCGTAGAAGAGGGCCACAACGGTGAGATGGGAGCcacaggtggagaaggctttcCACTTCCCAGCTGCGGAGGGGATTCTGAGCACAGCGATGATGATTCGCAGGTATGAGAAGAGGATGCACAGAAAAGGGGTCACGATGACAGCCAGGGTCTCAGTCATGACCACAATCTGGCTGGAGGACGTGTCGGAGCAGGACAGTTTTAACACAGGCTGGGTGTCACAAAAAAAGTGCTTAATGACATGGGAGGCACAGAA---------AGAGAGGTGAGACATG----------------AGTAGCACCCGGAACAAGGCGTGCAGGTGGGAGATGGTGCATGAACCTAACAGCATGAGGAGGCAATGCCGTGGGCTCATAGCCGCATTGTAGTGGAAGGGGTTGCAGATGGCCATCAGACGGTCAATGGCCATGGAGGCTAACAGGTAGCTGTCAGTGTTTGCTAAGGCTATGAAGAAGTACATCTGAACCAGGCAGCCTACATAGGAGATAGCCTTT--GTCTGTGAGAGTAAATTCCCTAGCATCTTGGGCACAATGACTGTTGTGAAGCAGATATCCATGAAGGATAAGTTGCTGAGGAAAAAGTACATAGGAGTGTG--GAGCCTGGAGTCAGAGCGGATGGCCAGGATGATCAGCATGTTGCCTACTATGGTGACCAGGTACATGGAGAGGAAGATGGCAAAGAGCGGTGTCTGCAGCTGTGGGTTGGAAGAGAGGCCCAGGAGGACGAA

a score=18746
s chr3           106821638 902 + 160039680 ATTTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATA--GTATAAAGCAGAGA----GAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGAT---GGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAA---------GCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACA-----ATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAA------GAGAATCCTCGAAGAACAAACTCCACTATCACCGTTTGATTTTCC
s HiC_scaffold_1 107160501 902 - 233722169 ATTTCCCTAGGGCATCCTTTACTTCTTTGTTTCTCAGGCTGTAGATGATGGGATTCAACAAGGGGGTCACTATACAGAAGAGAACGGAGATCAGGATGTCCATGTCCAAA------GAATAGCCTTCACTTGGCTTGTCATAGTTGAAGATGGCTGTCCCAAAGAAGACCACCACCACAGTGAGGTGGGATGCACAAGTGGAGAAGGACTTGCTCCTGCCTGTAGCAGAAGGAATCTTAAGGATGGCTGAGATGATGAGCACGTAGGACCCTGCAGTAAACAGGCAGGGGCTCAGGCCGATGGTGGCACTGGCCACATACAGCACAGATTCATTGACAGAAGTGTCTGAACAGGAGAGCTTCAGGAGTAATGG---AATGTCACATAAAAAGTGGCTGATCTCGTTGGGCCCACACAGAGTAAGCATGGCTGCCAGCACTGTA--------TGTGTCACAGAATTCACCAGTGCA-CAGAGCCAGGATCCAGTCACCAGGCAAACACAGACCTTCACACTCATGAGTACTGGATATTGAAGAGGAtggcagatggccacatagcgatcATAAGCCATGGCAGCCAGTAGGACACCCTCAGTGCCAGCACAtgtcaaaaggaagaaaatctggGAAAGGCAGCCCTCATAGGAGATAGTCTTTTTTTCCCGAAAGAAGTTCACCAACATGACTGGAATAGTAGTAGATGTATAGCAGATGTCTAAGAAGCTCAGGTTGCTGAGGAAATAATACATTGGGGTGTGGAGAGCAGG-----ATAGATCCTGGTAGCCATTATTATGAGGACGTTCCCCAGGAGAGTTGTCAGGTAAATGGCCAAAAAGACTAGGAAGAAGAAGCC------CTGCAAGTTGGAGTGACTTGAAAATCCCAAGAAGATGAATTCAGTGACAAATGTCTGATTGTTC

a score=15580
s chr3           106821640 746 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAA-ACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCA--ACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGT----------GA--GGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  56204428 746 - 233722169 TTCTTGACAGCGTCCTTCacctccttgttcctcaggctgtaaaTGACAGGGTTTAGCATGGGCGTGACCACAGCATAGAGGACTGTGAAGACCTCATCGGAGATGT-GGGCCTCCTTGCTCTTGGGTTTCATGTACATGAAGATGACGGTGCTATAGAAAAGCAGCACCACCGCCAAGTGCGCTGAacaggtggagaaggctttgCGACGCCCTGCAGCTGAGGGCACCCTCAAGATGGTGACCAGAATGAGTGTGTAGGACAGGCAGATGAGGGCCA--GGGGCACAGGCAGCAGCAGGACTGCCCCCACTAGCAGGAAGGCCTCGCTGACTGACGTGTCGCCGCAGGCCAGTTTCAGCACTGCTAGGATTTCACAGGTGAAGTGACTGACCACGCGGTGGCCACAGAAG------------GGCAGCTTCATGGCGATGACTGTCTCACTCACTGACTtgatgagacaaaacacccaagcGGCTCCCGCCAGCAGCAAGCACAGCTGGTGGCTCATGAGCACAGGGTACCTGAGTGGCTGGCAAATGGCTAggtagcggtcataggccatgatGGCCAGCAGTAGGCACTCTGTGGAGCCTGTGGACAGGCTCAGGCACATCTGGATGGCGCAGCCAATAAAGGAGATGGTCTTCTGGGACGACAAGAGGTGCACCAGCATCAGGGGCACAAAGGTGGATGTGTAGCAGATGTCCAAGACGGAGAGGTTGcccaggaagaagtacatgggcgtGTGCAG

a score=15821
s chr3           106821640 902 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTG---------------GGAAGAGT---TGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGA-----GGTGGCAAAGGCAACG---GTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCA--------GAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGC------AGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAG--------GTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATA---TTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACTATCACCG--------TTTGATTTTCCCA
s HiC_scaffold_1  65481722 925 - 233722169 TTCTTCACGGCTGCTTTCACATCTTTGTTCCTCAAACTGTAGATAAGTGGATTGAGCATAGGTGTCACCACGCCATAGAAGAGAGAGATAATTTTGTCTCTGAGTTGTTCTTTGTCTGCGCCAGAAGAGTCTTTAGCCTTAGGTTTAGCATACATGAAGAGGATGGTCCCATAGAATATAATAACCACTGTTAAATGGGCAGAACAGGTAGAAAAGGCTTTGCGTCTCCCCTCTGCAGAAGGAATCCTCAGAATGGTGGAGAGAATGAAAACATAcgagacaaaaatgaaaagtacTGGGCCCACA--------AGAAAAATCATGTTAGCAACAGCCATGCTAATAACATTCATGGAAATATCAGCACAAGCCAATT---TTAAGACAGCCAAGATTTCACAAGTGAAATGATTAATGACATTATCCCCACAGAAAGGAAG-CCGCATTGCAAGA-------GAAGTCTGCAACACAGAGTTGACACCTCCTGCGATCCAGGACCCAGCAGCCATGGGAACGTAGGAAGCCTTGCTCATGATGATGGGGTATCTCAGAGGGttacagatggccacatagcggtcaaaTGCCATCATACTTAGAAGGACACACTCTGTGGCTCCCATagcaaatg----aaagaa--acatttgtACTGCACATCCAGAGAAGGAAATGGTCTTCTT--------TGACGTTAAGAAACTACTGAGGAATAGGGGAATAGAAGAACTAGTGTAGCAGATATCCAAAAATGATAAGTTACTGAGGAAAAAGTACATAGGGGTGTGCAAATGGGAGTCATAGACACTCACAATGATGATAACACCGTTTCCCAGCAGGATCACCAGGT---ACATACACAGGACCAGAACAAAGTAAATGGCCTCCAGCTCTGGGTAGCCAGAAAGTCCCAGCAAGACAAATT---CTGTCACAGAAGACTGATTGGACTTTCCCA

a score=12923
s chr3           106821640 788 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGA------GAAACCTTTG-CGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAA------TTTCATTAGGGCCACAGA-----------AGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGC---ACTAGAAAAACAATAAGGATGTTTCC
s HiC_scaffold_1  51540372 788 - 233722169 TTTCTCAGAGCTCCTTTCATATCCCGATTCCTCAGACTGTAGATAAAAGGGTTCAGCATGGGTGTGACCACGTTATACAACACAGTCACAATGACATCTTTGTCCTTAGTGTTA-------CTagatgaagggaaaaaataaatagcaataattGCTCCATAGTAGAGAGAAACAACACAGAGGTGAGAACCACATGTGGACAAGGCTTTGCAGATTCCCTTGACTGAGGGAGCTTTCAGAATGGTGGCCCCAATGTGCCCATAAGACATCACAATGCATATAAATGGAAGGGTTATGACTATGGTTCCTGCTACGAGAATGACCATCTCATTGATGGTGGTGTCTGAACTAGACAGCTTGAGTAAGGCAGAGAGGTCACAGAAAAAGTGGTGGACAGTGTTGTCCctagaaaaagagaggaaagataaTAGAGCTGTATGCACA--AGGGCATTGGTAATGGATA---------------AGGCCCAGGACACAATTACTAGCAGGAAGCAGCATCTCTGGCTCATGATGGTGGTGTAGTGCAGGGGGTGACAGATGGCCACATACCTGTCATATGCCATCGAGGTGAGAAGGAAGCTGTCAAGAGCTGCAAACATTGCCAAAAAATATGACTGGGAAATGCACCCAGCGTATGAGATGGATTTACTATGAGTCAGCATATTCATGAGCATCTTTGGAACTGCCACTGATGAGAAAGAGATGTCAGTGAGAGCCAAGTggctgaggaagaagtacatgggagtGTGGAG---GTGGGAGTCCAGCCTGATGAGCAGGATAATGAGCAGGTTCCC

a score=13791
s chr3           106821640 746 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGA------GAAACCTTTG-CGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAG-----AAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGAT------CAATTTCATT--------------AGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  51567341 746 - 233722169 TTTCTCAGAGCTTCTTTCATATCCCGATTCCTCAAACTATAGATGAAGGGATTCAGCATGGGTGTAACCACGCTATACAACACAGTCACAATGACATCTTTATCATTAGTGTTA-------TTGgatgaggggaaaaaataaatagcaataattGTTCCATAGTACAGAGAAACAACACAGAGGTGAGAACCACATGTGGACAAGGCTTTGCAGATTCCCTTTACTGAGGGAGCCCTCAGAATGGTGGCCCCAATGTGCCCATAAGACATCACAATGCAGACAAATGGAAGGGTTATGACTATGGTTCCTAAAATG-----AGGATGACCATCTCATTGACAGTGGTATCTGAACTGGACAGCTTGAGTAAGGCAGAAAGGTCACAGAAAAAGTGATGGAGAGTGATGTCCCTCgcaaaagagagaaaggataATAGAG---TTGTATGAACAAGGGAAT--TGGCAATGGATA---------------AGACCCAGGACACAATTACTAGCAGGAAGCAGCGTCTCTGGCTCATGATGGTGGTATAGTGCAGGGGGTGACAGATGGCCACATATCTGTCATATGCCATCGAGGTGAGAAGGAAGCTGTCAATATCAGCAAACATTATGAAAAAATATGACTGGGAAATGCACCCAGCATATGAGATGGTTTTACTATGAGTCAGCATATTCATGAGCATCTTTGGAGCTGTGACTGATGAGAAAGAGATGTCAGTGAGAGCCAGGTggctgaggaagaagtacatgggggtgtggag

a score=15082
s chr3           106821640 882 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA--AACCTTTGCGTAAA--------TATT--------GGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAAC---------GGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCA--------GAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAA----TTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG----------AGCATGGTTGCACAGCACTAGAAAAACAATAAGGA---TGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACT
s HiC_scaffold_1  56313503 900 - 233722169 TTCCTCATGGCAGCCTTCACATCTttattcctcaggctgtagatgatGGGGTTCAGCATGGGGGTCACCACCCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCGGAGGGAATCCTCAGGATGGTGGTGAGGATGAAGACATAGGAGAAAGAGATGAACAAGACTGG---------GATTGCCAGGAAGATCACAtttgtcacccccatgctgatCACATTGACGGAGATGTCAGCACAGGCCAATT---TCAGGACAGCTAGGATCTCACAGGTGAAGTGGTTGATGACATTGTCCCCACAGAAGGGCAGCCT-TATAGCA-------AGTGATGTTTGAACCATGGAGGCAGCACCCCCAGCCACCCAGGAACTGATGGCCATGGGCACATAAACAGCCTTGCTCATGATCACAGGGTACCTGAGTGGgttgcagatggccacatagcgatcAAACGCCATCATGCCCAGGAGCACACACTCTGTGGCTCCCATGG---CAAAGGA-CAGAAACATCTGCCCAAAGCAGGCTGAGAAGGAGATGGTTTTCCTGGGAGTGAGGAAGCTGTCAAGGATGAGGGGGACAGAGGAGGTCGTGTAGCAGACGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggcgtGTGCAGGTGGGAGTCAAGGATGGT-------CACCAG------GATGAGGACGCTGTTGCCCAGAAGGATCACCAGGTACATGGCCAGGATGAGCACAAAGAATGTTTTGTCCAGTTTTGGGTGGGCAGAGAGACCCAAGAGAACAAACTCTGCT

a score=19362
s chr3           106821640 900 + 160039680 TTCTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCA--GGATAGTATAAAGCAGAGA----GAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAATCAGTGAAGTATCCATGCAGGAGAGAT---GGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAA---------GCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACA-----ATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAA------GAGAATCCTCGAAGAACAAACTCCACTATCACCGTTTGATTTTCC
s HiC_scaffold_1 107130819 900 - 233722169 TTCATCAATGCGTCCTTGACATCTTTATTTCTCAAGCTGTAGATAATGGGATTCAACATGGGGGTTACTACACAGAAGAGAACAGAGATCAGGATGTCCATGTCCAAA------GAGTATCCTTCTCTGGGCCTGTCATAGTTGAAGTTGGCCATTGTATAAAAGACCACCACCACAGTGAGGTGGGATGCACAAGTGGAGAAGGACTTGCTCCTGCCTGTAGCAGAAGGAATCTTAAGGATGGCTGAGATGATGAGCACGTAGGACCCTGCAGTAAACAGGCAGGGGCTCAGGCCGATGGTGGCACTGGCCACATACAGCACAGATTCATTGACAGAAGTGTCTGAACAGGAGAGCTTCAGGAGTAATGG---AATGTCACATAAAAAGTGGCTGATCTCGTTGGGCCCACACAGAGTAAGCATGGCTGCCAGCACTGTA--------TGTGTCACAGAATTCACCAGTGCA-CAGAGCCAGGATCCAGTCACCAGGCAAACACAGACCTTCACACTCATGAGTACTGGATATTGAAGAGGAtggcagatggccacatagcgatcATAAGCCATGGCAGCCAGTAAGACACATTCAGTGCCAGCACATGTCACAAAGAAAAAGATCTGGGAAAGGCAGCCTTCATAGGAGATAGTCTTTTTCTCCCGGAAGAAGTTCACCAACATGACTGGAATGGTGGTAGATGTATAGCAGATGTCTAAGAAGCTCAGGTTGCTGAGGAAATAATACATTGGGGTGTGGAGAGCAGG-----ACAGACCCTGGTAGCCATTATTATGAGGATGTTCCCCAGGAGAGTTGTCAAGTAAATGACCAAGAAGACCAGGAAGAAGAAGCC------CTGCAAGTTGGAGTGATTTGAAAATCCCAAGAAGATGAATTCAGTGACAAATGTCTGATTGTTC

a score=13664
s chr3           106821642 888 + 160039680 CTTCAAAGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGA--AACCTTTGCGTAAA--------TATT--------GGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAAC---------GGTCTCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAG---TCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGG--------AAGAAG-------CAGCAG--AACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACC----ACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGCAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG----------AGCATGGTTGCACAGCACTAGAAAAACAATA------AGGATGTTTCCAG--AAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGGAAATATTCAGCTGTAAGATGGAAGAGAATCCTCGAAGAACAAACTCCACTATCACCGT
s HiC_scaffold_1  56373070 903 - 233722169 CTTCACAGCAGCCTTCACATCCTTGTTCCTTAGACTATAAATGATGGGGTTCAGCATGGGAGTCAGAAGGCCATAGAAGAGGGAGATGAGCTTGTCTGCAAGGTCCTGCTTGTCTGCCCCCAGGGGGTCCTTGGACTTGGGCTTCCCGTACATGAAGAGGATGGTCCCGTAGAAGATGACCACCACAGTGAGGTGTGCAGAGCAGGTGGAGAAGGCCTTTTTCCTGCCCTCGGCTGAGGGAATCCTCAGGATTGTGGTGAGGATGAAGACATAGGA------GACAAAGATGAACAGGAC---AGGCACCCCCAGGAAGATCACATTGGCCACCCCCATGCTGATCACATTGACGGAGATGTCAGCACAGGCCAACT---TTAGAACTGCCAAGATCTCACAGATGAAATGATTGATAACA-----------------TTGTCCCCACAGAAGGGCAACTGTACTGCAAGTGAGATCTGCACCAAGGAGTTGGTTCCACCAGCCACCCAGGAGCTGATGGCCATGGGCATGTAGGCAACCTTGCTCATGACCACAGGGTACCTGAGAGGattgcagatggccacatagcgatcAAATGCCATCATGCCCAGAAGCACACACTCTGTGGCTCCCATGG--CAAAGGACAGAAACATCTGCACAGCA--CAGCCTGAGAAGGAGATGACTTTCCTAGGAGTGAGGAAACCATCCAGGACCAGAGGAACGGAGGAAGTTGTGTAGCAGATGTCCAGGAAGGAGAGGTTCcccaggaagaagtacatgggcgtGTGCAGGTGGGAGTCAAGGATGGTCAC-CAGGATGAGGACCCCATTGCCCAGCAGGA--TCACCAGGTACATGGACAGGATG---------------AGCACGAAGAATGTTTTCTCCAGCTTTGGGTGGGCAGAGAGGCCCAGCAAGACAAATT---CTGTCACCGT

a score=14040
s chr3           106821648 738 + 160039680 AGCTTCATGAATGTCTCTGTTTCTCAGGCTATAGATAATGGGGTTAAACATAGGTGTCAGGATAGTATAAAGCAGAGAGAAACCTTTGCGTAAATATTGGGAAGAGTTGGCTGAGGGCACAAGATAGGTGGCAATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAG--GTGGCAAAGGCAACGGTC---TCAATCAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAAGTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATG--GCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATA--GCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCAAGAGGCACTCTGTTGCAGCAAGGGATCCAAAGAAGTAGAATTGTGCCAAGCAACCAACCACTGAGATAGTCTTCTGGTCAGCTATAATAATCAGC-AACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAG
s HiC_scaffold_1  56196802 735 - 233722169 AGCAGCTTTAACCTCTGCGTTCCGCAGGCTGTAGATGATGGGGTTTAGTGACGGTGTCACGGCCCCATAGAACAATGTGACAATTTTA--TCCACATTGGGGTCCTTGGACTTCGGTCTGAAG-TACATGAAGGAAATGGTCCCGTAGAACACCACCACCACCGTGAGGTGGGCAGAGCAGGTTGAGAAGGCTTTGCGCCGGCCTGTGGCAGAGGGCAGCCTGAGGATGGCAAGCAGGATTAAAAAGTAggagaggaagatgaggaggagcgGGGTCAATGT-----CAGAACAGCCGTGGCCACCGTTGTTGTCACTACATTGAGCGAGACGTCACCACAGGCTAGTTTGAGCACTGCCAAGATCTCACAGAAGAAGTGGTTGATGACATTCTGGCCGCACAAGGGGAGGCGCCACACGAGGAT----GGAATGCAGCAGCGAGTTGGCAAAGCCTGTTCCCCAGCTCAGCGCTGCCATCCGCAGGCACCTCTGCCCATGCATGAGCTCTGGGTACCTAAGTGGCTGGCAGATAGCCACATAACGGTCATACGCCATCACGGCCAGGAGCAGGCATTCTGTAGTACCCAGCGCTAGGGTCAGATACATCTGCAGGGCACAGCCTGGGAAGGAGATGGTTTTTCGGGTTTCCAGTA-AGTTAGCTAACATGAAGGGCACGAAGGAGGAGGTGCCGCAGATGTCTATGAGGGAGAGGTTACTGAGAAAGAAGTACATGGGATTGTGCAG

a score=4946
s chr3           106821781 691 + 160039680 ATCAGTGTTCCATAAAATACTGTGACAACAGTGAGATGGGAAGAACAGGTGGAGAAAGCCTTTTTCCTGCCTGTGCCAGATGGGATTCTTAGGATGGCAATGAGGATGCAAGAGTAGGATATTGTGATAAGGAAAAATGGGACCAGAGTGACTGCAGAAGAGGTGGCAAAGGCAACGGTCTCAAT-CAGTGAAGTATCCATGCAGGAGAGATGGATCAAAGGGGCAAA--GTCACAAAAGAAGTGATCAATTTCATTAGGGCCACAGAAGTTTTGTCTACACAGCAGGACCATGGTGATGGCTGTGAGGAAGAAGCAGCAGAACCAAGACCCAATAGCCAACCTAAAGCAGAGAGAACCAGTCATGAGGATGGGGTATCGGAGAGGCTGGCAGATAGCTAGGTAGCGGTCATAGGACATCACAGCAAGCA-------AGAGGCACTCTGT------------------TGCAGCAAGGGATCCAAAGAAGTAGAA---TTGTGCCAAGCAACCAACCACTGAGATAGTC--TTCTGGTCAGCTATAATAATCAG-----------------------CAACATCTTGGGGACAATGTTAGAGGTGTAGCAGACCTCCAGAAAGGACAGGTTCACTAGGAAGAAGTACATGGGAGTGTGAAGAGCATGGTTGCACAGCACTAGAAAAACAATAAGGATGTTTCCAGAAATGGTTAGGATGTAGAAGATGCAAAACATTATAAAGAGGG
s HiC_scaffold_1  51011816 711 - 233722169 ATGACTGTCCCATAGAGAGCCCT-ACCACAGCCAGGTAGGAGCCATAGGTGGATACAGACCAGAGCATTCTGGAGGTAGAGGGCAGCTGAAGCATAGTAACAGTGACGACCCTGTCGGAGGTGAGAATGAGCAAGAAAGGACTGACCACCACTGCAGCACCCATGGTGAAGATGAGTAACTGGATACAGTGT-GTGTCAGAACATGAGAATTA----AGAGAGGCTGGTGGGCCCAGAATAAGTGGGACACTTGGTGGGAGGCACAGAAA--------GAACAGGTGAGCCATGAACAGGATGTTTAAGAGGAAGTGGA-----CAAGGTATACTAGCTAAGCCATCCTCACTAGGGCCATGCACAT---TGGCATAGTGGAGGAGGTATTGGATAGGGAGGAAGTTGTCATAAACCATAGTAGTTAGGAGACATTTATAggcaatatatatttatagacaTTTATAGTACATTCAGGG---CAAGGAAGTAGTGCGTTTGGGTCAGGCAGCCTACC--CAAAGTAGTGCGTTTGGGTTAGCAGAGATATACAGTGGCCATAGGCCAACAAGTTGGCCAGCATCCTGGGCACAATGACAGAGGTAAAGCAGAGATTATCAATGGACAGATGCGCCAGCAGGAAGTGCACAGGTACATGAAG-----GGCTGAACTGGCCT----GAACAATGAGAACATTACCCAGGATTTTCACCATATGCATTACCAACAATAGCACAAAGAGAG

a score=9631
s chr3           106873590 399 + 160039680 atttaaaacactgtgaaaacaaaagctcTACCTGAAAGGACCATCTCCTAAGGTATGTTGGATAGTCATAGTTCTCAAGGACAAAATAGTGAAGAAATATAAAATCAAAAACTTAATCTATAAAGGGTTCTATATCTTTCTACCCATCT-------------ATCAATGAGAAGTGTGTGCTAAATAATCTCAGAGGATTAGAACAATACAAAGA-------------ACCATCTTTATATCTAGGGTGTCACTTCTGAATTT---ATATCTAAACTCCACATTATGCTTGAAAAAAATAAGTACAGAATTTTTGAATA-TTTAGAAAGTTTCTCTAAGTCATCAGTAAATAAATTCTTAAGAATTTGGGAGTGGTCACTGTTATGAAACACTACTCTCTCCTAAACATTCCATGAGCTGGACTGAATA
s HiC_scaffold_1 117419902 400 - 233722169 atttaaaatattatggAAACCAGAA-------------GACTATCTTCTAAGGTACAATGGAGAATAATAATGAACAATTGGGAAACA----AGAAATCTGAAAACAAAGATT----CTTCAATGACCTATATATTCCCTCCTCCACCCTAGTCTTCTTACAACAAAGGACAACTTTGTGCTAAAT----TTAGTGGATAAAAATAACACAGAGCTCTGGATCCTCGTGCCATCTGTG-GTCCACAGTATTACTTCTGGACTTCTGACAACTGCGTTTTCAATTATTCT-AAGAAAAAGAAGCCTAGAATTTTAAGACAGTTTAGAGGGTTTCTCCAACTCATCACTAAATGCATTCTTAAGAATTTCAGAATGGTTGCTATTATAAAGCTGTGTTCTTTTCCAAAC--TCTATGAGCTGAGCTCATTA

a score=14119
s chr3           106876225 439 + 160039680 ACTATTCATCCTCCCT-GGGGGCCCATATTCTTGTAACTTTAAAAAAGTTGTCCACAGAGAGTTAGGGAGGTTTTTTTTGGTAACTCTACTGGTGAGCATGGGAGGAAG---TGAAGCCTTAATCTT-------------TGGGCCATT-TCTCATTAAAACCAGATAAGTCTTAGCTACTCTATATTCCCCTGATATC-TAACACTCTACATGTTTAATAATGTCCCTTAGGCTTTCAGGCCAATTTAAACAAAGAG---ATTATGAAACTTTTGCATGATGGTTCATAGAAATCATGTTTAATTATTTAGTCACCCTTACCACTGGCATCGTCCAAGATTATCCATTGTTAAG------AGCTCTTAGCTTAATTCTTTTGTCACATCAGGCTGTTCCACATTGGAGGATGGAAATATTTGATAAAGACCAATGCCTCTATTCATGCTTCATTTACCAGCCTTCA
s HiC_scaffold_1 117420389 446 - 233722169 ACTATTCACACTCCCTTGGAGACCCATATTCTTGTTA-TTTAAAGAAGTTATCTTTagataatta---------tatttaatatctcTAGTTGTATTCAGGGGAAAAGAATTCTAAGCCTTAATTCTAGTGCATGATCACTGGGTCATTGtctcattaaaaagaacaaagcctAAATAGATCTTT--TCCCTTGATATTATAACACTCT-------TAACAACATCCCTAAGGTTGTTAGGtcaatttaaatgaaaagcaaaatataaaacttttaaacaatGATTCAGGGGACTCATAATTAACTATTTAATTTTCCCCTTTCCTTGCATTATCTAAGACTGTTAGTTGTTAAACCTATTAGCTTT--GCTTAGCTCTTCTCTCAAACCAGACTATCCCACATTAGGGGATGGAAACATCTATAAAAGAGTACCCCCTCTGTTCATGCACCTTCCGCCAACCTCca

a score=30451
s chr3           106906316 834 + 160039680 GATTAGCTTATTT-TAAAGCTAATGTACACTGAGTCATTTGGGCAGATCCAGGAAAAGCTTGGCATGCAGATGACAGCATTTCACCCAAAGAATTTCATAATGATTTGGTCCCACAGTGAGAGTG--GTCCAGACTGGACATTCTCAAGCAGTTTTCTACCCAAAATATTAATTATTCATAATGCCTTTAAATACTCTTCTATGATGAAATGTTAAGTGGCATATTAAATATTCATCACGATGCACCTAGTGCAAAGCCATGGGTAGAACAGAGCAAAACAAGTGTGATTCGCATTATATATCTTTAATTCAAGGCACTGCA-AGCCCTAGGAGGCTAGAACTCTATCCTATTCTAAAAGAAAACCAGGAAAGCCAATT-TGCAGCAGCCCTTCACATCCTGCCAAACTGTCTTTATAGTCTTGGCAAAACA----TCTTTTCCTTTTTTTTTTTTAATCTTTTCAAAATTGAGgtataacttatatgaatatatatgcacacccacaataaccaacacctacatcatgttatagaatacttatagcagcctagaagttttccttctgcttcttccaagtcaatatc-----catcccacacacgtac-aaagtcagtattttgacAAAAAGTTGTTTTT---AAGTCTAACTTACATTCTTCCTGCTGTCATTGCTTTGACGTCTTATCCTTTTAAACTTGAAG-CACAGCCAAGGAGTCATCACTGCCCATTGATTTCAAGTTGGCTGAAGTTTGGAAACGGAAAACAGGAGGCTCCCGGGGTTGTTCAGGAAAAGATGGTAAGTAGGGCTTG---AGTGTGGAACAGCTTAGAGAAAAGGCAGAACAGAGAGA
s HiC_scaffold_1 117481097 836 - 233722169 GGCCAGCCTATTTCTGAAGCTGAAGGACACTGTGTCTTTTGAGGAGATCCAGCAAAGGCTTAACAAACACATAGGTGCTTTTGACCTACA-AATCTCACAGTAATTTTGTTTCACAATGCAAGTGTAAGCCAAGCTGGATACTCACAGACTTGCCTCCACCCAGCATATTGATTATTCATAATGTCCTTAAATATTCTTCTATGAAGAAATGTTACATGACATATTAAATACTCATCACAGTGTACCTAGTGCAAAGGCAAGGGTAGAATGAAGCAGAGCAAATgtgat-----ttacatatttttaattctagGCACTAAACACCCCCAGGCAGCTAGAAATCAATCGTTTTCTGAAAGAAATCCAGGAAAGTATATTCCACAACATCCTCTTATGTGCTGCCAAGCTATCTGTAGAATCTTGgcgagaagttttttttttcttctttctttttttaacttttagaaatTGAGGTGTAACTTATATGAGTATATGTGTACAGTCAC-ATAATCAAGTCCCAGATCAAGATATAGAAGACTTCTGGCAACCCAATATTTCTTC-CATATTTCTTCCTTGTCAATATCTGTCTCTTCTCACCAACATAAGGGAATCATTATTTTGACaagatactgttttttaaaattttagtaccCATCTCCCTTACAGTTTTCGCTTTCAAAttccataattttaaatttgaaatcaaaGCCAAATAACCA----AGTTCATTGATCTGAAAATTGCTAGagtcaaagcaaaaagaagagaagggTCCCTGGAAAGTCCTAGGAGAGATGAT-------GTTTGCCAGGTCTGGAGCAGC-TGGATAGAAGACAAAgtaaaggaa

a score=17695
s chr3           106909043 601 + 160039680 AGTTTTAAAAGTTTAAATA----AAAACTAAATAGTTCTA-----AGTTGT----TATATTGGGCAGAGCAATTCAATCTATAACTTCACTGATA--AGAATTGTTAAC-----AGTGAATTGAT--------TATTG--GCTTTTAACACAGTGACATGAGTTAGGCACCCAGGAAAT----GTTGAAAAC---GTCTGCAGAATGAAAGAATCACCAAATAAATAGAAATATGAATAAACAAATTAATTCATTTTAAGGAAATGTCATAAATGGAGCTAGTTT-------------------------------------------------------------CATTCAGGAGGGAACCCTTGGAAACAGTTCA-GTGGGAATGGAAGCAAGTACAATTCGCATTACA-TTGCCTTTCCACTTCCTCCAGACTCAG-AAAAGTAGCTTCCTCTTTGGAAGTATTTGTTTACCCAAACCTCCCAGCAAGAAAGACCCACCATGCTGGAA-----------ATAGAATGTCAGGAAAATAGAGACAATTGTCAGGAGGCCCCAGTGACAGCTGCCAAGAGTTCCTTTCCAATACAC---AAAGAATTTCTTCATGAACATCTCACAATAACTACTGCCCCCAATTTTGTTGACTAGATTCAATGACTATGCCACAAAAACCCATCATAGCTTTGCCTTGCTCCTTCCCATTTTAA
s HiC_scaffold_1 117490276 711 - 233722169 aacttttaaattttagttagTTCATACTTAAATAGCTGTATTAGCAGATGTCTACTGTATTAG--AGAAATAATTGACCCATGTCTTCACCTATAGAAAAATTGTTAATGCTAGAGTTAATTGTTAAGCTTCCTATTGTAGTTCTTAGCATAATGGCACATATTAGgcactcattaaatatttgttaaatatccAATCTGTAGAATGAAAAAATAGCCAAATGAATAAAGATATGAACAAATACAGTGATGCATCCAAAGGGACTGTCATAAGTGAATTTAATTCAGGATGTTTTCCTGGAAAACTCAGTATTTTGAGAGATTAAGAGAAACACTGGCATTGGCTGCATCTGGGTGGGAACTCTTGGCAACCGTTCACATGGGAACAGAACCAAGTACAATCCAGATCGCACTTGCCTTTCCAGTTCCTTCATACTTGGAAAAAGAAGTTTCCTCTTTGAAAGTATTTGCATAACCCAAGTCTTGGGTGAGGAATGTTGTCAGTGCTGAAAGAACAGACAAGGAAGAATGACAGGAAAG-GGGGACAATTGTCAGGAAGCACCAATGGCAGCTGCCAAGACTTAA-TTCCAGTGCACAGGAAAGATTTCCTTCAGACACAGCTCAAAATAGTCACTGCCCCTAAATTTACTGGTAAAAATCAGTGAGTGACTCACAAGTACCTATCTTGGCTTTAACTCTC-CCATCTCTTTTCAA

a score=20463
s chr3           106947948 1189 + 160039680 CTCCTGGAAACCATAAACTACTCTCTTTATGGCTCTATACGAAGAGTTTATGACACCTTATAATTTTGAAAATTATAAATTCTTCAAACTTGTAATACTTTGAAGCTCTGTAGCTTCAAATACTTAAAATATCCTtattagaatgaggatcaacgataaaatcagt-----aaattcacttcaccttgataagctgaaatcaaagagcaaattaaattcaa-----------agtaaacagaaaaaaatcatcataagga-----atcaattatataag----aatgatcagataaaaccaatgtaaatactgaatatttgaaaatattaatgaaatcTGATAATTCCCATCTCCACCTGTACTGATTGGCAAGGTTAAACAATATGACTAGAATTTTCTTCC-CTATTTTTCTCACCAAG---ATTCAAAAGCCTGGTGTCTCTTAATCACTGCTGGCTTTGATGATTTGTTCAAGACTAATAACATTTGGTGGATCTGGCACTTATTTACTTCCAAACTTTATCAAAACCAGGAAATTAACTTCCACCTGGCTCCCTTGTGATTCCTGCCCTGGAGGAAAACGGCTgctgagctgg-cag---------------------------------------gcccatagtcagcaccaacagccagccttgtgcagaagtcatcttggatgtccagccta---gagactgacatgaccaaatcccactcactgcctgctgaatacaggtgaattaaaaacttc-------agtggttcagttgagccattctaaaaacttctgagccac------------aaattaaattgatgg--------gttttagca---------------------------gtaagtttaattttctaggtggcaataacaatcaga------------------------------------------------aAATTTACAG--------------------AGAATTACAGgagaaattttaaatttctaatctcagaaaagtatgaaaagacatcactatacatattacatgtgtggaagggaaaacaaagcaatataatgaacaaaagcattgaagtatgtttggcaatttacatggacaaattag-taaaatgtgcacaagac----------ataa-----aaaaaatttcaacagctacaaatctatataacaagtaagataagtc-aaatttatgtttgaaaatcttcccattaagaaaactctagtccccaatagttcaatggtaaattaatccaatagttaggcaaaattatactattaataaataaacttggaaaaatagag-attaga-aatatcttccaaagtcataacaggaagcaaggacaaacctactactgaaa
s HiC_scaffold_1 117511805 1338 - 233722169 CTCCTGAAATCTGGAACTACCTTTCTATAGGTCCCTATAGTAAGAGTataataaac------agacaaaaaattaaaaata---------tgttacactttggaaat--------tcatatctttaaaatatctttcttagagaaaagaaaggc-aCAAAATCAGTCGTCTGAGCTTATTTCCACTTAATAGGCTGAGACAGGTGAGAAAATTAAATTCAAGTGAAAgattaagtgaaagaaaataaataaaaataagaatagaaaacaattttaaaatgaacaaacaacagATAAAATCAACGCAAACG-------tttgaaaagattaataaaat-tgtTAAACCTTA------CCTAGACTAACTACAAAGGTTTTAAAATGGGATTGAAAGTTTTTAAGGCTTTTCCTGTCATAAAATATACTCTTAagtttctt-catctttatctAGGCTAGCCTTCAGACTTGTTTGGAGCCAAAAAAAATTTGCTGGATATACTACTCTTTTACTTCCAAAATATATCAGAAAAGGCCAAACAACTTCTACCTGATTCTCTTGGGATTCTTGCCCTAGAAGAAGACAGCTACTATTCTGGACAGGTCGCAGGTCACACCATCAATGGCCCAGCTGAACTTTCAGCCCACAGCCAACACGAACAGGCAGCCATGTGAAGAG--CATCTTGGACATCCAGTCTAGATGAGTCTCACATGACCAAAGT-------GTGACTGGTGAATGCAACTACATTCACAATCCCATGAAAGAACTGATTACATGAACT-TTCCTAAAACTTCACAAAcacaaaatcataaataaattaaattggtAAGAACTATTGTTTTgggagtttttatttgtttgctttggttttttgtttgttttttgtttttgttggtaacaggggtcaaactcatgacctcatgcttgccaggtaggtacccCTTATGCTACTGAGGTAAATCCTTAGCGTATTAAGCATTATtgttaaagattaaaaaagaatatataaatttctGATGTTAACAATGAAGGAGGGGATGCTACTATAAAAATTAcacaagaaaaagggaaaataaagcaatattaGGGATAATTTCATGCAAAT--------TGGATTAAATGAACAAACTAATTAAAAGACACACATCACCAAATCTAAAATAAGTGATAAAAAGTTGAAATagctataaatttatattataaagaaGAGAGATTAAAATTCATACTTGAGAAACCT-CCACAATGGATATTC-AGTCTC----AGTTCAATAGTAAATCAAAGTATTA-TGGAGTGAAATAATATTGATGTAACatagattcagaaaaataagGTATTAGGTAAAAACTTCCAAACTCATTTTAGGAAGCTAGAACAATTTTGACATCAAAA

a score=49945
s chr3           106954616 1676 + 160039680 CTTGGAATAGAATGTTCCTTGCGATGTGCTAGCAGGGTAGTGAGTTTTATTCTCTTTTACTTGTAGGTTTGAATATTTTATCATGTAATGTGGCATCAGAAAAAGTTGAAGAAAAAGAATAAAAAAGCAGCTATGAGTCTCTTCTCCATCTCCAGCCCTGTCACTTATGCTTCCTACTACTTGTAACAAATGGCTCTGTTTCTGAAGAGCCATAACACACCTACCCCCAATGACACCTGTCTCCT---AAAGATGTGTCAGAAGGGAGAAAAGGCAGAATTACTCAT-ATGGTCATGATTTT-CTGTGTCCCGCACTGCAGGAGGAACAACTGAGGCCTGGGGGAAGGGGGCCCAGGGAACCCCTCTGTGTATCTTTTTGAACTCTGAGTTAAGGCAACATAAAGCACCACCAGTGATAAACAAGACTGC-ATGCTATCCTTGTGGGGATATTGGTAGGATTTTCTTGGTA-CTTATAGATTAGAATCACATGTGTTCCTTTTGTCCTTATAGTTCTTGGATGAACCC--AGGGTGATCTGGTGTTTGGAAAGGACTC---CCATCTGAGCAAGTCCGTTCTCTCT----CACATCTTCCAGGTTATGTGCTCTTACTGATATTCTTGCTttaattcagcagacatttgttgagcattcattagccaggctttgtgtagtcattgttgaataccaaga---------------------------------------------------------------------------------------------------------ttgagaagctcatttcttatgctggaagagacagacatgcaTAGAAAGAA-ACTGAGCTAAATGAAGAGAATATTTTCTGT---GTAATTACTACATGCCAGAAACTGTACAGGTTTTTTCTTTTCAAAATG-CCTTAACATGGGAAAGCACAGAGTGCTTGATTCTGCCAGGGAGAAGGGCCTTGCTCCCAAGCCATCTGACATGAACTCAGCCTGGAGAAATGAGTAGAGTCTGTAGGCAGAAAAAAGCACAGATCTCCGGTGCATTCTGGACAGGAGGAAGACAGCTTGAGCAACCGAGCAATGGTGTTAGATGATTTGATGTGTATGGGTCTTTGAGTGGCTCCGGGTGAAAGGAGTCTGAACTGCATTTGGGGTCAGGAGCTCTCCTTTCCAGCTGGAGCCTTTACAGTTGCTGTGGTGTCTTTGTATGCATTGTCTTAGTTGATCTGAGCAGCCTGC-CATTCCCTTCTCAGCTAGAGCACTAATTACCTGTCAGCTAAAACTAGGAAGGCTTTGGACACACCTAGA-AAGGGCTGGAAGGCATGTTAATCAAAGCCATTCT-GAGAAAGTGATTAAAATTCCCAACGTGTTCTACAAGCCTTCTGCTTCTCCTGAATTTTCAATGCAATTATTATCTCGTTCTTTGGGAGCAGTCAGCTCTCCAGAGAGGCATCCTGAGAAGCCCTGACATTTCAGAATCAGAG-CCGAGCTCCCAGCTGGCTGAG-GGGCCTGACAGCTCCCTCTGAATTTCCAGCAGCGCCCTGGCGGC--TGCCCTGTGGTAGCCTCTGTTTTGGACCTGGGTTTTCCAGCATTTCTCAGCTGGAACTCGCAGAACCACTG-TTGTGGCACAAGCCCACAGTGGCTCTGAGTCCCCTAGCTACAGAAATTC-TACAGCCAAGGAGGGTAGAATGCTCAGGAACAGATGTTCAAACATAACACTTTCCAAACG---TCTGTGTGGATTTTATACCCCCCAGAGGCTTGTTAAGAATGCAGGT
s HiC_scaffold_1 117521646 1702 - 233722169 CTTTAAATAGAAT--TCTCTGTAATATGCTAGCAAAGCAGTAGATTCTGTTTTCTACT-CTTATTTGTTAAAA--------------ACATGGTATTAGATAAAAATGAGGGAGAA------AAAATCCACTGTGATGCTTTTTTCTACCTCAAGCCCTGCCACTAGTGCTTCCCACTACATGCAACAAATGTCTAGTTTTTTTAAGAGCTATA-CACACCCACCCCCAGTGACAtctgtcttcttttaaaaatgtattggagATGAAGGAACACAAGATTACTAATTATAGTCTTGATTTGACCCCATTCCACCTTGCAGGTGGAAAAACTGAGGCATA--------------AAGAAAACATTGGGTGAATTGTTCTGAACTGCAAGCAAATGCGACATAAAGCACAACCCTTTACAAAGAGTTTTTTGACACTAAAATTG-AGGTATGTTGGCATAGTTTTCATAGTGGCTTGTGGACTGAAATTACAGCAGCTCCTTG----CATACGGTTCTTACATTAACTCTTAGAACAGTCAG-----CACCAACAGCTCTGGCTAGCATGGCAGGTCATTCCTTTCCACTCCACCTTTTCCAAGTTTCCTTTTCTAACC--TACTCTT---Tacattaaaca-atatttattgaacatctactCATTGTGCATTGCATACTCATTAT-GAATAGCAAGAAAGATAAGTTCGTTTtacttgtttatgtttttttgtctctactgggaattgaaccccgAACCTCACATATACCAGGcaatgctctatcactgagttacaaccCATTTAATAAATTCATTTCTTATACTATAGGAGATAAACattcaaacaaaaaatagtgAGTTAGAGGAAGAAAGTAATATTTATCAAGCAGCTACTACATGCCAGAGACTGTGCTG------CCTTTTTGACATGACCTTAATAGAGGA---CAAAGAATACCTAATTCTGCCATAGAGAAGGAACTAACTGCAGGGCAGTTTTACTTGAATTCAGCCTCAAAAAAAGAGTAAAGTTTATGGGCAGAGGGAA---CAGA------AGGCAATCTAGACAGTGAGAAGGTAGCCTGAGCAAA--------GGCGTGAGATGATATTGTGTCCTCAGGCCTCTGTGTGGTCCTGGGTGACAAGAGTATGAACTATGCT-GGGCTTAAGAACATTTCTTACCATCTGTGG-----ACAGTTTGTGCAGTGTCTTCACatgcattatttttcttgatCTGAGCAGCCTGTACCTCCCTTTCCCAATGAAAGCACTAATTACCTGTCAGCTAAAATGACAGAGGCTTGGGACACACCTAGGGAAAGGCTGGAGGGAATTTTAATCAAAGCTATTCTTGAGACAGTGATTAAAACTTCCAA------------GCCTTCTGCTTCTCCAGAATTTTCAATGCAGTTATTATCTACTTCTCGGGGAACAGGCAGCTCTCCAGAGGATCTTCCTGAGCAGCCCTGACATTACAGAATCAGAGTCTGCACTCCTGGCATCCTGAGCTGACCTGACAGCTCCCTTTGCATCTCCAGCA----TCTGGCTGCTATGCCTGGTGCTGGCCTTTGTTTTGGATGTGAA-TCTCCTGCATTGGTCTGCTGGAGCTCTC---ACCACTTCTTACAGCACATATCCAGGCTCATTCTGAGGCCTGTGG-----GACTCTCTTACAGCAAGGGAATGCAGAATGCTCAGAAACACCTGTTCAAACACAGTAGTTCACAAACTAACTTTGTGTTAACTTCATGCCCTCAATAGGTTTGTTAAAACTGCAGGT

a score=74911
s chr3           106956851 2723 + 160039680 AAAAACTAAGAATTTGGGTTTTAAAATCTCTGTGATCAGAGGATCCT------------------------CTCACAGAGAC-------CGGAGCTCATCAGTTTCTGATGAGACATAAAAGTGAGGTTGAAGGGCCTGGATGAAACTCCAGAAAGCATCTTAAGACACATCAGTAGAGTGTGAGGCTACTCTTC----------CTGACTTTTGGGGGGATGACACACCC--------------------------ACAAAGACTCTACTCACTACCCTTTGCTAGCTCTGAAAACAATGCAGCCCCAAAGCAGGGCCATCCC---CCCTCC------TGCATGGTTCCAGGGTCACCCCCCTCTCCGCAC------CAGCCTCTCTAGCCCTGACTGGAATGCCTGAGCAGAGAAATGTTTGAAAACCACTTTCAGCCTGGCTAATGATGTAGTTCTTCAAAAAGTGTCACCAGGATGAAAAATAGCTCA-AAATGGCAAGTCCCCCTTATTTCACCAGCACAGCCGGTAGGAAGTTCCTGCCAAGCAAGATCAAACTTCTTGGGAATGTTTTGAAAAGCTGATGGAAACAAGGGCCCCCATCACAC-TCTGCAGCGCTCCACCCCAGCTTGTGGAAAAGCTCGTTTGGAACAGCTCTAGTCAGTCTCAAAAACTCACACAATTGATGCCTCCTGCTGCACTGTCATTTCCACTGCAGACTG--AGCTACATCCTCTTGTTTCTAAGGCAGAGTGGGAAAGGTTAGAGAA-ATATCCAGGCTTTCCCTAAAATAACTATAGCAGCTTAAAGGTGCTGTCCAGA-AAGATGGCTCCAAAGGCATCCTCT-GCCCATCCCTGCCAGAAGCCTGTGCTGGGCA-CGTTTAATTTCCTTCATGCATCCCCTGGCCCCTGTGCAGTGGTCCAGGTGTC--CTCTGTCTGTGGGAAACTGCGCCATCTGTCAGGCATCTCTCTCTTGCTCCCTAGCCTTCCCTTTCACCTACACATCTTGATTAGCAGATGACAGTTCCGCTCTGATGTTTGTTTTGCCTTTGACGGATTTTCAGCTCAAAAAACAAGACAAGGGGTGCTTTAACCTCCACAGAACCAACAAT-GCTTTCTTTGGTTCCCCTTCCCAACCTTCCAAGGAAAGATACTGGTAGGTACTCAGAAAGAAAGGAAATAAC---------------AAGTAAGTAAGTTCATGTCTTCCTTGCCCTCTGTGATATAGAAAAACTATTCGTCCATTTCTCCAAGTATCACCACGTTGACAC--TGAGTGGCAGACAAAAA-TAGAC-AGGGGATTTATCCTGTAGCTCAAAGCAAATACTGAAGTCGGAAAGGAGGTTATT-TTCTTGGAAATAAAACAGCAAATTGAAACATGCAACCATCTTTAATTCCCTAGTCTTCCCCTGTATCA----------CCCCTTATGCCC--AGTCAGAGTCTTCCTGGAACTTAGGTAAAGTCTCAAGAGAGAACATAAGATACAGAATTCAGAGATGAGAACAGCAGTGGGGACTATAAGTGGGAAGATACAGATCCATCTACAGAACACTCAGCCAAATAAATCACTTAGAGACTCAATACTCAGATCCATTGGCTTGATGAGTCAGTCACCCACAAAAAGAAAGTGCAATGCAG-CAAGAGCC-AGAACTGTGAGGCATCTTCACTCCCTACTCATCTCTCTCACATTTTGTATTCAACTCAACACTAATCTTATAGAGTCTGACTCCCAACGATCTGACAAACCCATCTGCTCTCAATCCTATGGGGTAGAGTTCCTCATACT---GTTCGC----------TTTTGCCTAAGTGGATATAGTAATAGACCCCAAGATGGGCTATCTTCCCCATCCATTCTACTCCACAC-AAGCTCCTTGAAAGGACTTTTGAGAGAACAGGATTCATGTTATTCT-CTGATAAACACCTTTCAAGCTGTGAATCTCTCTCCTTGCGTAGGA-CCTGCTTTTCCGTTCAAAG-CCCAAGGCCAtgtacgatctgctttctatatagttctccagctacaactcttatgactccttgcctcaaacagtgggctctagaaaactacacatctctttt-caa------aagtagacttttcatttatgatccactgtgcatg-------------ttttaataatcatctgacatttccaa-------tcacccttgattcct---------------acttgaactttaaatctcaactaaaatgtca----ctttaaacttcctctcctaaccctcaaagcactacatcctggattctcctctttgacccca----GAAATGTATACATCCTACTTCTGGTTTGTATGGCCCAAGAATTCAGGAGCCATGACAACTAGGACAGTTATCTTG---CCCTAGCCTTGGGTCAGAGAACAAAGGAGACT-CATAGGTGTTATGGTTACTTGTTTtggcttaagcaaca-cgagatttatttttctcatacgtcatcagatcagaagcccaag--atcaaagAATAAATCTTTCTCCTAAATCTTTGTCTTTGAACAGT-----------TTCTCACCGTGTTCTTATGTGCCCTTTCCCCTGTATGTAAGAATCCCTGATGTCTTTCAATGTATTCAAATTTTATATTTTCAAAA----ttttaattgac--aaaatcattatacatattcatagcatgtggtacaatacaatacagcacagatgataggatgcagcagtcaaatcaaagt-aatcaaaatatatcctatcactgcagatatttatcatttcttcaagttggaaatattcaaaagtctcccttctagctatt-----gaatgtattagattattattattaatagttcccatgctgtactctatatacaaaactagaagttaatcttcccaactaAGTTTACt
s HiC_scaffold_1 117523467 2842 - 233722169 AAAAGACCAGAATTTGGGTTTAGAAATCTCTGAGGTCAGAGCCTCCTAATTTATCACTTTGTAGGTTTCACTTCAAACAGACTCCAGCTCAGAGCCTGATAGTTTCTgatgtgagaaaaaaatgaagttgggGGTCACAGGATACATTTTTCAGCACATTTCATGCCTCAAAAGTAGAAGATGAAATGATCTTCCTCCAGTTCCACTGACT---------ATGGCATGCCCTTCTGGCCCCATCATTCCTAGAAAACACTGAGGACCTCTTCTCCCCTCTTTCCTCATTCTTGAA-CAGTGAAATCCCTATG-AAGGTTATCTGGAGTCTTCCCAAAGATAGATAGCTCCAAG--CACTGTCCTTTAGATAGAGAAGGCAGCCCCTCTGACCCTGAACTACTTGCTAGatcaaagaaatctttaaaaaccaTTTCCAGCCTGGCTAATGATGCAGTGCTTTGAAAAGTGTTGCCAAGATGAAAAACAGCTCACAAATCGGGAGTCCTCGTTATTTTACCAGAACAGCCGGCAAGATGCTCCTGCCAAGCAATATCAAACTTCTTGGAGATGTTTTGAAAACCTGATGGAAACAAGGGCCCCTGTCACACTTCTATCACACCCCACTCTGGCATGTGCAAAAGCTCTCTTGGAA----GCTAGTCAGTTTTCAAGGCATATAAAATTGTTGTATCCAGCAGCATTGCCATTTCCACTGCAAGCTGAAAGCTACATCCTTTAGTTTCCagtgaaaaaatggaaagattagaGAATCCTTCCAGGTTTCCTCTAAAATGATTGGAATAGTGTGAAGGTGTTGTCTGGAGAAGCTGCTTCCCAATTCTTCCCCTCATTCTTCCCTACTAAAAGCTTGAGAGAGACATTGCTTAACTACCATTAT---TTCCCTGGGTCCTGTATCTTGGTTCAGGTGCCCTCTCTGTCTGCTAGAAGCTGAGCCATCTGTCAGACATCTCCCTATGTCTCCCCAGGC-CCTTTCTCACCTACACATCTCGATTAGCAAATGACAGTTCTGCTATAATGTTTGTTTTACCTCTCACAGATTTTCAGCTAAATAGCTGAAGGAGAGGATGGTTTACTCTACTCAGAATCAGCCCTGGCTTTGTTTGGTTCTTCTTTCTAATCTGCTAGGTAAATAAACCTGTTTGCattcaaaaagggaaaagataatgtttttatagctgaggagtaATGAAGGTCACGTTCTCCTTGCC------AACACAGTGCAGAGAATTGTTTACTTCTCCAAGTAACATTGGTTTGACATCACGAGCAGCAGACAAAAACTAAACAAGGGAATTCACTCTGTAAATCAGAGCAAAGA------TAGGGGAGGAAAATATTGTCCTTTGggggaaaaagtcaaatt-----atatGGTCACACTTAACTTTCCAGTCATTCTTCCTGCCAAATCCATTCCCATTTTTTGCCCTTAGTCTGAGTCTTCCTAGGATTTAGACAAAATCTGATGAGAGGA-ATGAGATATGGCTTCCAGAAGGGAAAGAAGCAATGGAGACCAGGA-TGGAAAGGTGTGCATCTATCTATAGATCACTCAACCAAATAAACCACTTACAG--TTCATGC-CAGATTCATTCTTTTGATGAGTCAATAATGGGCAAAATACAACTATAATGCAGTTAAGAATCAAAAATTGGGGACCGTCCTCacctctt--ccctcttcctcaaTCTTCATACCCAACCCTTCCTCAGTCT--TAGAATCTGACTCCTAAATATTTGTCAAATCCACCTGCTTCT--CCCTATG----------CCTACTACTGCAGTTCACTGCCATCATTTCTTGCTTAAATGGCTA---TAATGGCCTCCTAATTAGACTATATGTCCCTTCTAGTCAACTCCCTACAAAGCTCCC---AAAGAC-------AGGTAAAATCTCATGCCATTTTGTTGATAAG-ATCTTTCAAGAAATGCTTTTATCCTCTCCTCTACTACCCCACTTTTACATTCAAAGTCCTTAGGCCCCGCATAATCTGACCTGTACTTATTTCTCCAGCCTCAA--CTTGTGACTGCTTGCCTGAAACAGTAAGCTGCAATGAAATAGGCTTTTCTTTTGCAAGAGACCAAGTACTCTGTCATTGTTGGAGCCGTGATGTATGCCGTTCTGTCCACTTGGAACAATCTTCCAATGTTTCCAAACCCTCTTTACCCTCAATTCCCCACTAGCTATTTCTGACCTAAATTTTAggtctcaa-taaaatattatttcctctAGGCAACCTTAACTAACCTTCAAAGCACTTGATCCAGGACTGTCTTCTGTGTTCCTATAGCAAAATATATAT-CCCTACTTCTGGTTTGTGAGAACCAAGAGAGTAGGAGCCATGGTTATCAATAGGATTTACCTGTATCCCTAATCCTGGATAAGAGAACAAAGTGGGCTCCATAAATTTTGCCA--------TTTTGTTTAAACAACATTGATGTTCACTTCT------GGAAGCCAGGACTACAGGCCAAGTTGTCAACATATTTAGTTTTTCCTGAAGCCTATTTCTTTGACTTGTAGAAGGGTGTCTTCTCATTGTGTTTTCACATGCATTTTTCACTGTGTGTGAGAATATCTGATGCATTT--ATGTGCCcacatttcctcttttttaaaatactattaatttacatataataATTGTTCATATTTATAAGGTGCATTGTGATAT--TTCAACAAATGTTGCAGTGTGCAGTAATAAAATCAGGGTAAATTAACATAT---TCAtcactttaaatatttatcttttctttgagtTG--AATATTCAAA---TtcttttctagttattttgaagTATAAAGTGTATTAGCATTAACTATGGTTACCTTGCTATGCTGTACAGTT--TTCTAGAACTTAAGCCTCCTATCTAACTGTATT

a score=25739
s chr3           106962191 1363 + 160039680 CATTCACTATCCACTATCCAGTGTTTTATTAAATGTTGGTATAAATGAAAAAAAAGCTCTATTAGGACTTAATTATATAGTAAGGACAATCCATAAACATGACAACCTAATGTCTTTAAACATAAATCACAACTAAAATTCCACAGAAGCCATAGTATA-----------------------AGGAAGAGA------ACAGCACAGCTTTTATGTAGCAACACCACAGAATTGATATTTGTACCTTCAATACTTAGGTGATACGATACTTTCTTGAAACGTGTACATGCTTTGTCAGGA-CACAAAAGGACATGGAGTTCCAGAGACAGACTTCCCAAGCTACTCTTGGATATCTATGCCAAC-AAATACACATGTTGCGCATTTTAGCTTT------CTCCAACCCTTTCTCTATGAAAGTAGAGTGAAGCATTGTG--------------ACCCAT--------CACTATCCTCA----------------GGTGCTGCCATGTGGCAGGGACAATAGGCACACCCAGGGGAAAAAA------------CGGTCTCTGTTTCAGCACCATGGACAAGGGTGCCACTAACATTTGACTGTGGTTTGGGAACTAAAC-----CCAAGGCTACACCTGGTGCTATCTTCTGCTGTTTA-----CTGGAAGT----------CATCCATGAAACCTTGGATCTCACTTTGCTGTTATGTGGCCTTACTGACCTGAACCCTGAGATGTAGAAACTGTGTGTTTAGTGGTGCATAGCAGTATTAGCACTGACATTCTCATCCTACCACGGCCCATCCACCTGGGCCTATATGTACTGTTTCAAACCCATCTGTCCACATTGAAAATTGCATTCCAA--GCTGTGGTTTATTATTTTATATTCTATTTACAAATCACATTTCCAAGGGCTAATCCACATGA-TCCTATCAACACTGTAGAACTCAATTCATCCTGGAGGCCAAGGAAGAGATTAGATATCTGGATTATAACTCAAACAGAACTGACTAGGTGAAGGATAATCAGGCCAATGGAAAAAGATGAAGGAGAACCCAGGCTCAGTAAGCATGCATCCATGAGGAATTTTATGGTAGGTTTTGAGCTATGTGAATACCGGGATGGGATTCAGTCTGTTTACTATTCTATTTCAAGTATTTGGTACTTAGTAATGATGCTTAAATTGTCCCTTAAATAAATCAATACCCTTTCTATCTATCTCTAAGATCTA-TAGAATTGTATTTTATTTGAAT------------TAACTT----------GTAGTTTAATGGGTAAAACAGAGTCACGAATCTCCAAGT-ACAAAACCAAATGGTTATGAAACAGAGCAATTCAGTTTAGAAGTGTACtatatatacatatatatatatatatatatatatatatatatatatatatGGGGTACAGGGCAAGTAAGAAATCAAGTAAATGGGGAAAACAC--AAGCTGAAATCAAGC-AAATTCCtgt
s HiC_scaffold_1 117527834 1338 - 233722169 CACACATAATCTAATGTC-ATTGTTttattatataatgaaataa--gatTAATAAACTCTAAAATG-TTGCATTATGTGGTAACAAATGTCCGTGAACATATAAACCTAATTCCTTTAAGTGTAAATCA--GTCACAATAGCACAGCAGCAGcaaggtaccaaaaaaataaaaaaattttttaaaaagagagggaatACAGCATAGTTTTAAAGT----------CAGGCTTAATATTTACAGTTTAAATACT-ATGTAATAAGAATAATTCTTGAAATGTTTACATGCTACATTAGAAGCACAAAGCAGTTTGAAGTTGCTGGGGCTGACTTCCCAAGCT---CTCAGACATGCATGACAACCAGGCACATACATGGGAAATTTTAGTTTTGATCACCACTATTCTCTTCCATATGAAAATGAAGTGCAAAGCTACACTGCTCTCCAGCCTACCCATTCAACTCCCCCTGTCCTCACCCGCCTAACCTTCAATGCACCACAACTTTACAAGAACAACAGCTTTTTCAAGATGAGGAGGGCCATAACACTGTGGATTTTATTTCAGCACCAAGGACAGAGACA----TAGTTTTTGAAGCTGACTT------TAAGCGTGCATCAACTTTTAAACTAGTTTGTTTTACAGCTGATTGTGCTTCCGTAAGCTAAATGGTCACATACCTAAAGCAGTGTGTCTTATTCATATGTT--GTGGCCTTTCTGATCAGGACCCTCAGATACAGAA----TATGCTTACTGGCCATTGCTAATGTTAGGACT-----------------------CATTCAACTGGCCCTATGCCAATTGTTTAAAACCCATCTGCCTGCATCAAAAATTGTCTTTCCACTGCCAtggtttattattttctgttccaCTTACAAATCACATTTCCAAGGGCTAATCCAGTTGAATCCTATCATCACTACAGACCTCAATTCACCCAGGAG--------AAAGATTAGATACCTGGATTATGACTTGCAAAGAACTGAATAGGTGAGAAATAGTCAGGTCAGCAAATCAAGA--AGGGGAGATACAGACTTAGTAAGCACACATCCTTGAGAGGTTTTATAATAG---------------------------------------------------------TCATTTGACACAAAGTAATCA---TTGAACTActtgttaaataaattaatagttaCAATATGTATCTCAGAGACCCActaaaatttggttttatttgaaTACAATCTGGTGCTACCTTTAAGAATTTCATAATATAATACATGAAATAGAGTCATAACTGTTCAGGTAAAAAAATTAGATGGATAAGAAATAAA------TAGTTACGC--TGTATTGAGGAGGCAGGTGTTCCCA-------------------------ACATGCAGTAAAAGGCAATGGAGAATTCAAATAAATGAAGAGATTACTGATGTTGAAATCAGGCAAAATTCCTAT

a score=27367
s chr3           106963952 1439 + 160039680 AAATCCCCATCCTTGTGACCTAGTAAAATCTAATTAGTCTCTAACATTT------TTTTAAATGGTGGATTACAGAAAACAAACCATTCCCTATTCCCTATATTACAAAAAGAACTCATTAACTTCCTGCCCTCCAAACCAATCAAACCAGTAAGTTTTCTCAGGCTGTCAATCTATTCCTGCCCTGAATTAATGTGGATTTTACCAGCTACAGAAGAGTGCTGGGCTCAGCTACCTTATCTTGTCTCAGATCTGATCCTTGTTCTGATTCTTGAATC-TGCTTTCTAGTGTCATCAAGGAACCAAGAGATTTGCATTCTGCTGGCTTTGCCAGTGATTGCTGATCCCTTTTACAATGCAG-ATGCAGGCACCACTGTTCTTACCTTGCCTGTCTTCTGTCATTTTCTAGGGGCTCTGGGAACTGCATAAACAAGGTCAACCATTTTCTGTTTGTATCTCATGATATATAACCTCTATATTCCACCTCCATGATTACTTCTACCTGAGGAAGACTCCTCTAATTTCCAAAGCTTCACATGCAGAA--------AAGCATCCAAAGCCTGTTGAATAAAACCTTG-ACATTTCCTTTCTCTCCCTTGCATGGCTCTCGACATCCTGCTTCTCTCTATTCTCTCAGGGcagtggttttcaaccatagcagtacattcaaactatgtgaggagattatagaaacatcagtgcctggactcaacctaaatgcactgga---tgcactttggatggtg--ttcagtgtgttattgaagtttccccgatagctctcatgtgaagccatggctaaggaTTTTAACTGACCTTCTTTCTTTTTTATTTTATATTGGTTgtatggagtctcgtatgacaagttgtaagagttaagaagttggttctcttctcctatattgatcccaggaataagaattcagatcatcaggcttggtggcaagcacttttatctgctgaatcatctctctgtcccTTGCTGTCCATACTCCTATAGCTTTATTTCTCCCATAGTATTTGACAGCAATTCATAAATTCCTTGAAGTCAGAGAGTGT----CCATAAT---ATTTTGAGTCAGTGACTAACTCAGAATTGGTCCTTAATGAGCAATTGTTAGAATAAATTTTACTGGATTGAATTGATCACCACTAGAAGAAAAAAACATTTAGGCACTGTTCATTGGC-TATAACTAATCATAGAGATAGATACGATCAATGT--TTCTTTCCTTTCATTCTCATGGAAAATATGAGATTTTGAGGCTTTTATGCCTGTCTTTCTGCTCACATATCCATATTCCTTGCTTATTTTCAAAAGA-ACAAAGAGCTAATATGAT--GTGATGAGTGCCTGATACA--GAGTAGAGTATGCCTCTGCATGGACAAAGTCACTTTATCTTTAAAGCATAGTGT----CATAACCCCATCCACAACTTTCCTCTTTTGCTTGCCTCCCCTTCCTGCA
s HiC_scaffold_1 117529162 1261 - 233722169 AAATTCCTATCCCTGC-Acctggaaaaa---aattaatctctGGTCTTCATTATATTTAAGATAGTGGCTCACAGAGGATGACTCTTTGCCTATTCACAATAGTGCCAAAGGAATCCAAGATCTTCCTTCCCTTCAAACTAATACACCTGGAAAATTTTCTCTGGATCCTCATATACTTTTGTCCTGTGTCC---TGAGAGTCACCAGTGGTAGAAGAGCTTCTGGTTTTGCTACCTTATCCTGCTACAA----GACCTCTATTTGGATCCTTCCCCCTTGGTTCACAGTGTGAGCTAGAGGTCAAGAGACTTCCATTCTGCTT---------CTGACTCCTGTGCTCCTAGACAATGCAGTATTCA-----CTCCGTTTTTGATGAATGTGACTCC--TTACTTGCATGGTGTTCTGAGAACCACACAAATCAAGAGAGCTGTTCTCCTTTCATGTCCAAAGATTTTTCTCCTCTATGTCTTGCCCATATGGCTCCTGCCACCCAAGGAAGGTTCACCTG---TCCCAAGCTCCACATGTAGGAATCCATACAAGTCTTCAAATCTTATTGAATAAAGCCTTGAacatt---tttctctccctttcacaaTGCTAAACCCTCTGCTCCTCTCCGTTGCCCTAATGTAGCACTTCTCAACCCCACTGAACCATTAGAATTATgtgaagagatt-taaaaatacaaattcctgGACTTCATCCCATACTAATGAAATTTTCACCTCTGGTAGTGGAGTTAGCATATTACTGAAACTTCACAAATGATTCTAATGTACAGTCAAGGTTGAGGGCTTT-GCTGTCCTCATTACTCTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------TATACCTTCATTTCTCTCATACTGTTTAACATCAAATCATAAACTCCTTGAGGACAGAGGCTGTATGCCCATATTCTAATTCTAGAAATGTATGTTACCCAG--TAGCTTCTTAACG------TGTTGAGTTGAATTATACTGGGTTGAACTGATCACCgtt--gaaacaaaaacatttaggCACTGATCCCAGATATGCAACAAATCAGCAAGATAGACATAGGCaatttactttcttccttttgtcctcACAGAAAAGAAGAATTTTGGCTGTCTCTCCCCGTATCCTTCT--CTGCTTCTCTATAGTCTTTGcttctcttcaaaaaatagtaatagttGTGTTGATTGGCATTGAGAGCCTAATATAGTGAGTGAAGTACATTCCTACATAGATAAGGTTACTATGTATTTAAAG----GTGTAACCCATAACCCCATGTTCCACTT--CTCTTTTGCTTGCGTCTCTTTTATtca

a score=11797
s chr3           106970628 370 + 160039680 TGCGTGATGACTGATCTAGGACAAGCAGGCTCAGGCAGAAGGTGAC-AGGCTTATCCAGTAGTGTGCAATGTCTGGGTTCAAAGGGCGGTCATAACCAGGATACTGGA-------------TTTGGCTTTACAGTCTTCATTCTCTTCCAAATACAGGGAGAGATATTCAGGGGAAAGAAGATTAGTGAAAGCAGGCCACGTTCTTTTGGGTCACTTAACATAACAATTCAGCCTCAAGGAAGAGGATTCCTTCCTGGTCTAAAAACAAAAAGTATTAATGCCACTGAAAAATTCATAGGTCAA-GTTTCCATCTGCATTGAGCCTCCCCCAGGCCCTCTGTGGGTAAAAATAAGTGCTATCTAGTTCCGTCCTAGGAGGAGGGG
s HiC_scaffold_1 117549633 359 - 233722169 TACACAATGACCAATCATGGACAAATAGACTTA---------TGACTAGGATGATACAGAAGTCTGCCAGAATTGCGTGCA---TGTGTCTATATTGAGGGTTCTGGACTCCCTAGAGACTTTAATCTTCACATTCTTCTCTGTCCTCCTAACACTGGGAGAAAgttgcaaa--aaagaaaatcaatgaaagcaGGCCAAATTCCTTTGGGTCATTTGGCATAACAAATCAGCCTTAAGGAAGAG----CTTTCCTGGACTGGAGAGAAAA--TATAGATG-CACTAAAAAATTCATAGGTCAACTTTTTCATCTTCATTGAGGCTCCCTCATgctttct----gtaaaaataaattc-accCAGTCCCCTCTTGGAGAGTGAGG

a score=80279
s chr3           106977845 4529 + 160039680 [encoded data, 4732 characters]
s HiC_scaffold_1 117555536 3862 - 233722169 [encoded data, 4732 characters]

a score=67823
s chr3           106983227 4279 + 160039680 [encoded data, 4616 characters]
s HiC_scaffold_1 117561523 4098 - 233722169 [encoded data, 4616 characters]

a score=23615
s chr3           106988719 770 + 160039680 AAAGGTACTTTCTGCTCAAATCCATCATTAAAACAAATGTTACAGCTCCTCCTTCCCCCTCGAGCCAGAGCCATCCCTGTCATTTCCAGCCCCCCATGACTGGTCTATGAAGTAAAGAGGATGGCAATGCCTCTGGATTCTCTCATTTGGCCT-------TCTCTACATTT--TCTGGCTAAGCCACCA----CACCTTATCCCAGACAAGGCCTGAAAATTCGATCACTACATGGAGCTG---TGGCCAATTGGTCACTT----CTTATGCCACCCTTGAAGGTCACAAATGTTGGAGACTTTCAATTACAATCCATTTGGGAACCAAGATGGGGGAGATGCCAGAAAATGACAAGTGGTAGGCACAG-TCTCCAGGGTAAAGCACATCCCAGCTGTAGTGATTAATGAGCTTGGCCTCCTTTGGTTGCTACCAACCTGTCAGTCCTTGATAAAGAGCTCACCAAACACTTTGCTGCTATGAATCAGAATAGAAAGAATAAGAAGAGTTTTGTTTCCATCTGAAACACAGAGCTGGGGAATGACCTAACAGGCAAGGTGAGTGAGCAGCTCTGAAGGA-AGAAGACACCTTTGTGTCCTTCTTGCTAACTCCCCTGAGATTTCCCTTCTCTGTA-------------ACGTAATCAGTGATGTTCACCTAGGCAAGAAGAGACTCCATGAGG----GACAATCAATACATAGAAGACAGATTAATT---TAGCATTCAGGAGGTGATTCAGCAGGGAATAGATTGTGGAGGCACTGGAAGACAGCAAAGAAATTGGGGTGTGTTTCTGAGA
s HiC_scaffold_1 117566317 774 - 233722169 AAAAATTCTTTCTGATCAAGCCCACTGTTGAAAGAAGCAT----GTTCCTCCTTCCAT-TCAAATGCCAACCATCCCAACCAATTCTAGGTTCATTCTACTGGTCTATAAAG--AAGGAGGTGATGACTCCTCAAGACTA--------GGCTTGAACCACTCTCTAGATTTCTTCTGGATTATCTGTCAGTCCTGTCTTGGCTCAGAAAAGACCTGAGAACTCAATTGCCACAAAAAGCTGGTCTTGCAAA---GTCACTTAATCTCCATGCCACTCTTGAAGGTCACAAAAGTTGGAGGTTTTCAATTACAAGAAGGCTGGGTGCAAGGAAAGGGGTGCTGCCAGGAAATGACAAGTGGTACGCAAAAACCTTCCAGGCCAGGCACATCCTAGATGTAATGATGAATGTACTCAGTCTCCTTCTGCTGGCACCAACCTGTCAGCTCTTGATAAAGAGCTTGCCAAACCTTTTCCTATTATGAGAGAGGATAGAA-------------TTTCACTTCGCTTTGAAACACAAGCCTGTAAACAGCCTGAGCAAGCAAGGAGAGCTGAAAGCCCTGAAGGACACAAGACACATTTGTGTCCTTCCTATTGGCTCCTCTGAGCTCTCCTTCCTGTCTACTCAATTTTCCTGAAGCAGTAAGTCCTGTTCACCTAAGACAGA----ATTCCATGAGGAATTGATAGCAAGCAGGGAGAATGCTGGCAAACTTACTACTATTCAGGCAATGATTCAGCTAGAAACAGACCATAGC-ATATTGAAAGCTATCCAAGAAGTTAAG--GTGTTTCTGAGA

a score=57927
s chr3           106992044 2367 + 160039680 CAAGGCTTCTGAGAAATGAGTACCCCTGGAATAAGGAAGGGGTCAGTGGTGGATCCACA---CTGCAGCTAAGCCAGACCAC------AAGTGGTCTCTTATTGTGGGAGTTCGCAGCCAAGCCTAAAAGGAAAGCCCA--------GATAAGGTAATTTGAATCCTGGTCTGTTCCAAT---------GTGCATTTCACTCT---CTTCCCAAGGTCGGAGACTGTAACTTTAATGTCTCTATGTCTTGCATTGAAACAGTGACACTAGTGACTATTAGTGGAGTATTCAGGA----TGATAAAGCTTCCTTAGCATGGAACATAACTTGCTTCATTTTTTTTCTCAAGAAAAC--CATGAGGCAGACTGTAAACCCCATTTTACAAACAAGACAACAGATGCATAATGACTTGCC----TGTGAACCCCGAGTGTGACTCTGGGACTCATGTGCATAT--ATACTGCACCTGCCTGGCTTC--------TACTATGTGTGCAGCCACTATGT-AAAATTGCTCTGTtggatgggcagatgaacagtctgatgggtgaacagatggatggatggatTTATCGAGTTACCATAAGAAGCAATACAGAATTTATCCCTAAAATCTCTCCTACCTGTGATCTGGACTCCATGAATAG---TCATCTATAAGACAAGGCTCTGCCTGA-CCAGACATCATATTAATGAT-CAAAACAATACTTGTACTTAGAGAATCCTTGAACTTGTTCTGACATCCTCATCTTGGCTCACCAGTACAAGAGTAGCTGCACTCAGAACACCAATAAAATCTCAGCTATCACCATCCATACATCTGGAG---TGCAGTAGCACAAACTTGGGACTGTAGACCAATCCA----------------TCAACCTAGCGGCTCCTGAGC-----------TCTCTCATCTTCT-GTACATGTGCAAAACTCACAGAACCTTTA----------AGAAGATA-GTTTTTCCGTTGCTTACTTCTGAACTAAAA-CAAAAACTTCCATATTCATTCAATCTAGTCTTCAAAAACAGACTCATAGAG------------GCCAAATAGAAAGCGGACCAGTAGGACCCATATTCCTTGGCTGGAGCCAGCTTCATGGACAGATAACATGACGAGAGAAAA-GCTGTCAGATTGCTATTGAAAAATGAGTACTTGCTCCAATTCCC-TGACCCCCAGCATTGTCAGCTGCTGCTTTGGACCCTGAAGAAGGGATAACTCACTCCCCTTCCCTAACTAATGGCAAATGAGCATTTGGTCCATCCACCAAGCTGGGGCCTTGATAAACAAGCCCCCACCCCCTTACACTGGAAATTCACTAGCTGAAGAATCACAGCTTTGAGTTAGCTCCATTTCCCAGGGCTGTGCAGAGTTGCTCCTGATTAAATTTCAGCAGCTGGACACAATCTCTC--TCCTCAACAATGAAAGTGATTGGGGTGGGGGTGGGGGGATAAACAATGGAATTTGCCATATTAATATTCTCGCTATTCTGTCAGGAGTGAGATGCATACTGCGCACTGTGAGAAGCTCGTCCTCCTACAATGAGG-GCTGAACCGGGGCTCTATAGGCTGAGAATGTGCTGGTCTGAAAGAAAAAAACCCTTGCCTGGTAGGCACTGAGCCTGAGAAGGGAACAAGGTCTCCCCTTTCA-------------GATGTGATAGTAAATGAGCCCCAAGCCCCTAGACAGGTGCTGGAAACAACAGCACTGTGCCATTGAGGAAGGAAGCCTTTTCAGGCTTCTAAAATAAACTTAGCAGTGATAATACGGTTTATTTAC---ATACCTTCGGTGAATCAAGTACTGTACTAAAT-CTTCAC---TAACATTTGCTTGTGAGACGCTATTAATCACAAAGTAAGACCACACTCATTATTTTAAGATTAATATCAATGAACAAAATAGATAAAAAAAAATACCTTGTGATTCCATCTCCCAAAGATAATTAGCATTAACACTCAGGCATGTATACTATGCA-----------------------------------TTTTGTAATTGA----------GCCTAAAGAGGTTGAGTGTGTTCTAAATAAAAGTTATTGGCCCAGTAGAGTCATTACTAGAACTCAGATTCTTTCATTTGCTGAATGTTAATCAAGAATTTGTGTTAA-CAGTGTTTTTAGAGATTGGAGTGAGTCCATATTCCATAAAGAAT-GGACAGATAGGATTTTTCTCATCATGAGCCTTCTCTATAGAAGCACATCCCATCAGTGCACAACAAATAAGTGATCTCTGAATTCAAAACGCAGAACAAAAATAACA--TACTTTCATTTTAAGTGACAGTCCTGGGAAGGGAG--TAACTTGGAATAGATCCCCAAAATTGGGGGTTTAcatccacaaaactttcaacccaaaacttatcctctctacaaataaataaataaatagatagataaataaataaataaataaataaataagtaagtaaatgcagagacaggggatggaacagaagctgaaggaa
s HiC_scaffold_1 117569427 2396 - 233722169 CAAGATGTATGAGAAAAGAGTGCCACTGGAACCAGG-----------GGTTAGTCAACAGGTCTCCTGTTTGGCCGGATTACCAACAGAAACAGACTTTTGCTATTGAAGTTCAGAGCTGAGGTTGCAAGGAAACCTCACTTACTTCAAAATAATAACTTGAAT--------GTGCCAAACTACCAACAGTACACATCCATATAAGCATCTCAAAGTTAGGGAgtatgactttattttctttgagtcCTCTATTGAAACAATAATAATATCTAAGAT--ATGGagtatttaaaacatattaaacatCATTCTAAGAATGGaacattgtttgcttcatttctt--CTTATGAAAACTACATGAGGTAGGTTCTAAGCCCTGGTTTACAGATAAGTGAATAGATGCATGATGACTTTCCCTTTTGACAAAAGCTAATCAGGCTTTGAATCCAGTGTGCATATTCCTACAGAACTTTCCATGGTCCACAGGACATATTATGCGAGCAGAAGctgttttaaaattgttgttttggatga----------------------------atggatggatggatagatggagcTGCCATAGGAGAGAGAACAGAATTTATCCTAACAATATTACA-----GGGATCTGGACTTCCTGAATAACTTTTATC-ATGATATAAGTCTCTGCCTTCTCCAGGCTTCATTTTGGTtagataaaacaatattttttcctAG----------------------CACCTCCTTCTGGGTGTACTATCACAGAGGTACAGCCCCTGGAAATTCAGGTGAAATCTTC-------TCATCTGT-CATCTAGAGCTTTGTAATAACACAAACTTTGGCCAACAGACCCATCTAAGCAATCTTGGAACCCTAAAATTGCAGGCCCCTggatatttccaaatatttctgaTATGCCAGCATatttgaaaaatccaaagaatcctTACCTTGCTTTGAGAAGCCGTGTTTTCCCTTTGCTT---CCTGAGTAAAAAGCAATGactttcaaattcatttaaaataatcttcAAAGACATAATCACAGAAAAAGTCAAGGGAGCTGAATACAAAGTGGGTCATTAGAACCCAGAATGCTTGGCAAGGGCCAGCTACACTGACAGATAACCtgacaaaagaaaaagtcatagGGTTTCTAATGAAAAATGAGGACTCACTCCAGTTCCCATGCCTCCCCTCATTGTCAGTTACTGCCAATGGCCCTGAACAAGGGATGGCCTGCTCCCCT-CCCTAGTTCACAATGAATAAGCATTTAGTTCATCCACCACACTGAGG-----AGGAGTGGGCAATCCCTACACTGCACTGGAAATTCACTAGCTAAAGAATCACAGCTTTGTGTCAGTCCCATTTCCCAGAGCTGTGCAGATCTGTTCCTGATTAGATTCTAGCAGCTGGGCACAATCTCTCTTtcctcaacactcaaaattatttG---------GGGGAAACAAACAATGGAATTTGCCTTGTTAATATTCTCTGCAGCCTGTAGGGGATGGGGTGCATACTAAACACTATCAAATGCTTATCCATCCACCATCAGGCAATGGGCTCAGGTTCTTAAGAGCAATAATGTGATAGCCC-CCCCCAAAAGCCTCTCCCCTGATAGTCACCAAGTCTGAGA---TAAAGATGTGTGCCCTTTCACATCCTCAGCTTTGATCTTGTGATGCCTGGATGCCAAGGCTC-AGACTGAGGAT-GAGGCAACAACCTTGAGCCATCAGAGAAGGAGACCTTTCCAGGCTTATGGAA-AAGCTTAGGAGTATTAACACTGATGATTTATTAAATATCTACAGCGAATCAGGCATTGTGTTAAGTCCTTcacaaatattatttcattttgaagtgatattaattacaaaatgaaaccatgttcattatttaaaaagtaatatatatgaccaaaatga--aaaaataaatcctttGTAATCACATCTCCAAAAAATAATCACTATTAATATGTTGGCATGTATTCCACATAATAACCCTATAAGGTATAGACATTATTAGGCCCCCTTTTTTAGCTGAAGAAACTAAGGCCTAGAGAAGTCATACG---TCTAGATAAAAGTTACTGCATTAGTAGAGTCAAAACTTGAACTCTGGTTCTTTCATGTGATGAATGTTTATTGAGAATACATGTTAACCACTGTGCTGAGAAATGGGTGACAG------TTTCTTAAGGAACAAGGCAGATGGGGGGTTTCTCACTACAAATTCTCAATCTGGGGAGAGAGCCAAGAA----ACTACTAATATGTAATTTCTAA----AAATGACATGTCAAAAATGAAAGGCACTTTCATGTTAA---ACTgtcacaggctggggatttagcttagtagtg-----------taagcgcctgcctggtcatgagtt------------ctatacccagtaacaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaagggagggagggagggagggaggga

a score=26448
s chr3           106995587 1533 + 160039680 AGGATCAGGAG---TGCCCCTGGGAGTCTCAAGccagatcaggtggagtccggaagcctccatgcagaaaggtctttgactttcaagtgtaataggaggaaagtggatattttcagcagaggagtaacaa--ttggatttgcactttaaagagattttctttgttcctgagtagagatctgagtt-------------cagaggagcCATTCAGAGAGAACT-------------------------CTCCC-------------TGGGTCAGTGAGGGATC-----------CATACTGGAATAAGGGACTC--------------------------------------AAATAGGAGATAAA--------------AAATGGCCAGTACAAGTTGTAGTTTTTCC---AATTAAAGTATACTTCATTAGGCAGAAACACTTTTGTAAAAAA-CTTTGTTCAAGAAGGGGAAACACCTA-GCAGGGTTGAGTAGGAAGCacaaacaaacaaacaaacaaacaTGACAGAAGAAAGTCCTTTCCAAGTCATGAGCTAAGGAGACAAT--------CTGTCACAAAGGCACAGAAAATACCAATAACTCAACACAGGAAAAATGCCCGATGTTTCCCATGTTGtgttttgagccctc----tctgcatattcatggaaccttcacaa-ggttgtggggaagatgt-tagcatttaccccacattacagagtgagacaggcctactcatgactacata-tctgatagatgacagaactaagccttcaactccagcaggctgactgtagaccatagctattatccactCAGCTGACCTGCTTTTGAAATATGTCAACTAATCCCACAAAGCAGCCCACAGAGCCGCCAGATGGCCAGAGAGCATGCACATAGCATTGACAGCAATGACGTGCCATTATTTTCT-----ACCAAGGATGATTGCA--------AACAAAACTAAGATACAGGAAGTC---CTCTCAGGGATGGGTTTCACAAACTCCCATCTGTGAAACCACAGCTCAGCCCATCAGCCTCACATCCAGTATGAAGAAAGAACAGA----------GGGTAGGGCTGGA---GTCCTGCCTTTA-GATATGTATCATGTGTGGACAATTCAGACAGCTTGGTCAACTTGAATTTAGAAAGAAACCTCCAAATAAATTGATCTATATGATTGCAGATGATGACCATTATAACTCAGCACAGCATTT-CGAACTAAATTGTGACCGTACCAAGAACAATATATTAACCCCTCTTAAATGGAGGGAATATTTCTATCAA-CGGTAAAGATTCAAAGTAGA-------TCTCAGTGAATGGTAAGGATGCTTTCAAGGAAACCATAT-------------TGCTTGACAACAGCC----TTTGTATGTACTTGCCTTAGTTACCAGTGAAAGTCTTCATATTGATGAGATGCTAGGTTATATGTTAATC-------------AGATACTCTAA-----AGGTACATCTATTGCAATGCTAGCCTATGCTAAGGAGATAACC-AAAGAAGAAACAAGTGTATATGGGATGCAAATTTTTCCTCCAAGGAG---TTGAGTTCAACCATAGAAATAATTCTTTCATCA-----TTTCAGTCAAGGGCCTTAGATTTGTACATAAGATTTTTTTAAAGAACAAGGAA---CTTAACACACCTGCAGGGCAGATCCAGCAGAGATTCTTGGAGAAGATGACA---TTAAAGAA
s HiC_scaffold_1 117572385 1691 - 233722169 AGAATCAGAAAGTATGCCATTGG-CTCCTCAAGCCACACtaggtaaagccttggaggct----gGAAGAAAGTCTTTAGAATTTAAGTGTAGTATGAAGAAATTGGATATTTTCCTCAGAGAAGTAACTAGGTCAGATTTGCTGTTTAAGATAACCTT--TTGCCACTAGATAGAGAACAGATTTTGGGAAGACAAGTCAGAGAAGACACACAGGCAAGACTGAAAATAAGGGTAGCTCACACTCAGCAcccatgaaaattaaaatgggtaaaaaagggtgctggggatttagctcagcggcataagtgccttgtaagcaggcagtcgtgagttagatccccagtaccgataaaaaggaaaaagacaaaaaaatgggtAAAAAGGTTGAAACAAGTTACACTTTTTCCCCCATTGAAAGCTCATTAATTTAGAGAAAAGCATATTGGTAAGAACTCTTTGCTAAGTGAGGGAAAATACCTCTGTATGGTTGGGTGAGGGGCAGGAAAAG----------------GACTTGTACTAGTTCTTTACAAGTTATGAGTT--GGAAACAGCAAGGGAGACTATCAAAAGGCCACAAA------CAGTAATACCTAACTTGATGAGTAGTTAACTTGTTCCAGCCTACATGCTAAGTTTTTCACATATACTCACTCATGGAATCCTCATAACAATCGTAGGAGGAAAGTGTAGCACCTATCTTGTTTTACAG-GCAGGTTAAATCAAATCTT--CTCCATAGTCAGACAG-TGGCAGAGCTGAACCTTCAATCCAGGGAGGCTGACTCAAGACCATAACTGTTAGCCACTGTGTTAACCTGCTTTTATAAGATGTCCATTAATCCAACCAC-CAGCCTAAAGAGCTGGCAGATGGCCAGTGAGCATACACACAGAAATGGAAGCAAGAgccttccactattttttttaacaagaagcatctttgtattaaaaaaaaaaaaactagtatatGGGCAATCTTTCCTTCCATGCTAGATTTCACAAAA-CTCACTTGTTCTACTGCCATTTACTCCAACACTACCACATCCGGTTTCAAGAGAAAGCAGACAGAGTACTCGGGTATATCCAGCTATATCTAGCTTTTAAGGTTATTGTCCTGAGTGGGCATCTTGGAGAACT-GATCAACTTGAATTTAGAAAGAGACCTCCAAATGAATCAATCTAT---ATTGCAGATAATGA-AATTATAGCTTAAGACACCACTTAAGAGCTAAATTACTACCTTGCC-AGCGTAG-----------CTTTAGACAGGAAAAGATATTTGCATTAGCCAATAAGGATGAAATGTAAAAGTAAGTTCTCAGTGAATAGtaaaaaaatctttcagaaaaCTATATTTTGAAACAAGCATACTTAACAACAGCCATCTTCTCCATATATTTACTTTAGTGATTAATGAAC-TGTTCATATCAATGAGatattatatttcatattaaGCGATCCACAcatatagatagacagatagatagatagataaatt---atGACAGCCTACACTAGGAAAATTATAGAGagaagtttcaaa-atatttaatgtttaatttttacctCCCAGAAATTTTTAATCTTACCTTTAAAAAAACCGTGTACATTAATCTGTATGATTCCAGGGACTTTgatt----catattatatatataaa-agcaGAGAAGGGCTCGACACACTTGCTAGGCTGATC------AGTGTCTCAGGGGAAATGGCACACTTGAAGGA

a score=30987
s chr3           106999654 1367 + 160039680 TCATGGTAA-----CCaggtagacaacgaaggtctttgattaagatccaggctattgctgttgaaaccaagtttcaaagaggttacatttagcttacataagcacaactgggactcacatt----ctgttct-----------------------------------------tccaagaagtaatctaatgttccttttgctgtaccatgttgtctTTCTAATGGCTTTACTGAGTTATTATTTAATAATTCTACTATGCAACAATGAAAGAA-----------------ATCTCTCTATTTCCTGTTGTGTTGCCAAGGAGGACATTATATGTCAGTGAACAGAGTCCATTGTGTTGCAAATCAATAGGAACTCCACACCAAGATCAGGCCTGAGTCTCCTGGAAAATGATGTTTTCTCTTATTAGACATAACCTTATGAGTTGTGGCATTTCA---TTGTTTTGTCCTTCAGGAAGCACAGAAATGGAGTTTGAATTTAATTATAATAAA---------AATCTAACTTCTGGTTCAATTGTGATCCTCTCTCCC---ACACTACTTTTTATCTACATTTTTACTTTTGCTAGTTGTGTATATGGATACAGCATTTTGATGATTTG------------CTTGTTAAAAGTCACCATGGTAGGAAGTATAGGCAATCAGCaataaccagcattaattaaatgcttatcatatgccaggaaccagcgttgcagtttacatacactcattcacttcctcTAATCAAAATCAAAACCTCACATTACCAGAGAAACCAAATGTTAGAA-GAGCCAAGAT--------TGAGACTTTCGAAAGAAAGGCATCTGTCtctcctcacttccctttatc----tcactaggagagcctccaccacctctcacctcaattatttctacacttttattcttgga----------atcctgac----ctccaccctctccc---------------ttttcttgttaaaacatgagttagatttttctcattgttctgccctaaaccccaagacaattccctatctcactcaaactaactagcaaagtcttttaaaaagcataa-ggccctgcaagctctggcat----cattcgtaatctgcctctgcctctctctgccctgtggctacacaga------cccagtccaggcatccttgtgtgtctgaatcattacattatatttgctctttccgaaggctgac--------acatctttcagatatctgtgtctcacttctttgc--catcttcaggggtcaaacatcatcacctccaagaagatgtcctaatcttcttgccaacctccccctca---------------gtgctctgtttatttatcctgagcagattcaattaacttgatgttcagtatatttatgtgtggcttacattgag---------------------------ccacaaaaaaggagtta-gaaggcagggatttta----tcctaattctttgatacattcaaatcaactaaaattgtgtttcacatacagcaagagcccagtaaatgt
s HiC_scaffold_1 117575340 1534 - 233722169 TCACAGTAATTTTGCTGGGTAGACAAAGAATATCTTAGCATAAGGTCCATTCTATAGATGTTGAAACTGAGGTTCAA-TAGGTTATGTTTAA-GCACATAGCTAAAACTGAGACTCATATTAAAACTCTTCTAAGAACTCACATAGTCTCCAGGAATACCATGTCCAATTTCATCAAATAACTCGTGTAATGCTTGGCTCAGTATACCACATTGTCTCTCCAGTGGCTTTTTTGAGTTATTACTTAATAATTCTATTATGAGCCAATAAAAGAAATAACCCAACAAAGAATATCTCTGTATTATCCACTGAATTGCTGCTGGAGACATTATAGGCTAATAACTTGAGTctgtaatattaaaaataga-aaaaatttcatGCCATCAAGAAGCCTAAGCCTCCTTAAAATTGACATTTTTTAATC----ATACAGTCTTATAAATTAtggcattttgtttttgtcttggttTTCAGGAAGCATAGAGATAAAATTAAAGCTTaattataataacaataataataatctaaTTTCTAGTCCAATTACAATTCTCTCCTTCTATACATATTTCctgatctttattttcattttactcaaTTATGTATTTGCAC------TTTTGATTGTTAGCCATGGTAAATCCTTTCCAGAAATAATTGTGGTAGAAAACAT--GAAATAGGCAAtaactaaaaccaatcaaatccTTGTCATAATTCCAGGACCATTTTACCACTTTATATTAactcatttcatcttttta---------aaaatattatattgccAGAGAAATCAAATGTTATAGTGTGATGAAATTACTGTTCTGAACCAtaaaagaacaagacacatgccTTCTCCCTTCTCACTCTGCTACCACCATGGTGGGAGCCACGACTACCTCTCACCTCAAT--TTCCAATACTCTCCCCATTAGACTTTGTTTACACCCTTACTTTACTTGATCTTTTCCCACTGAATAACTAGAATCGTCCTCCTAAAACAAAAGCCAG-TGTTCCTC----TTCTGTCCCAAACCTCCTAACCACTCCCAACCACACCTTAAGTAAATGTTGAAGTCCTTTCAAAACTCCACTGGCCATACAAGATCTGCCCTTCTCCACTCAGGTTCTCCTATTCCATCACTCTGTTGGATGGCCACACTGAGCTCCGCTTATTTCAGGCAG-CTTGTCACTCTTAGTCTTTGC-----ATTTGGTGTTGCAAATATCCAACTAGATATTTCTTCCTTTGAGTATCTGTATGGCTTGTTCTCGCCTCATCTTCAGGAATCAAACATCATCTTCTCTATAAGGGCTTCCTGGTTCTCTTACCAACCTCTTCCTCAACACTCACTatctttgttcttgttttatttctcctgcACCCATTTAATTAAGATACTatgtaatttacttatttatagtttatttatagTGCCTGTCTTGAATGATAGGCACAACACTACAACGAAGGCTTTCTGAAGACAGGCATTTTAATTCATCTTGTTCTTTGTGGCATTCCAATCAATTAGAATAATATTTGGCATATGACAGATGTctagtaaatat

a score=57257
s chr3           107001888 2568 + 160039680 AATCCTGATTTCTCATCGATATCCATGAGAGCTTGACATTTTGATTAGAGAAGGTGAAATTACTGGGTTTATAGGGATAGAAGGTATAGGCAGAGACTGACAAAAGGGAAGGTGGTGGTAAGGGGTGGGACTGTGTCTATGTGTTAACTACT---------------GAAAA-------GTATACTCTAGGCATTGAA--AGGAGTCTGTCCGTTGTATTGTTCACAGGACCCCTTGGTCTGTACCTGAGTATCTATGCTTGAGAAAGTGAAGAGCAGAAGTCAAATGGTTTTCCCATCCATGGGAGACTACTGAGATTTCAAACATCACATTTTTCCCCAGCTTTGCTTAGGGATGGCAGCTTTCAAAACTTGGGGAGGTGACATTCCCTGGCAAACACTGACACACAACATGAGCATGACTGA-----ATGCTTCTCCAAAGGATTTTGCTTGTATAATAGGCAGTAAGCTTGGATTAGTATGAGCGCCATGGGTAACCTCAGTCCCTGTGGGTGACAGACTGTACTTGGGACATACATGACACACTCATTGGAGAACTCCCAGAAATAGCAGAGACAC---CATGAGA---------AAATGTGCAGTGTAAGGAGAGTAGCTGAGTGGGGTTGAGTTGCATATGACATCATGGAATTTAGATATAGTGGGAACTTTACAATCGTTTCAGCTGACTAAGCATTCCATCCAGAAGTGTCTTTGATTTTCATTGAACAAAAACAC-ATGACTACAACATAATTTAGTCTCCCTTTCC-CTCACCAGTGTAAA-----------CTAGATTGTTATGAACTCACTTTAGCCCCCACCCCACAACTCTCATTGCCGGGATTTGTCTCCTTACTAACATTCAAGCTCTTGGCTGGAGGTAAAGCCTTTGTTCCTCTCCTCTTAGTGTT--CCTCACTGTTGACGCTCCTGCCAAGTATCGTCTTGTAGTTTTAATTGCTAGTCTTACTGTGGGGCGGCTCTCCTTCTCTTTTAGAAG-GAAAAAGCATTCATTTAATTTCTAACCCAATTAAAC--------CATGAGCTCATGTTCTGTGAGCCAGAGAGATGGGCTCCAGAGACACGAGCAGAATAGAAACTGCTAATGTTAACACGATTCCCCCTTCCCCATCCAGGAATGACTAACACAGGGTGAGAT----TATTTGTGCTCCAATAGCTTTCTTCAATTAATTAATCAGCAGGTACACATTCAAAAAACAAGCTTTGGAAGATGCTGCAGG-CTACTGTCATTCTCAGGAACACCAGAGCAGTAGCTCAAGGGTTCCAAGAAGAGCTGTGAACACCAACAGACCCCAGTGTTGACCTCCATTCACAAGTTCCTGAC-TTTGGGAAATTCTATTTCACTTTAAAGACAGTAAT--TTGGTTTGGAATTAGCAGAACAGAGGAGAAAATCTTGCCTGTTTTACTCCTAGTAGTAACAGAAGGGGAACCTACAACAGTCCTAAAGTATGACAAGCAGAACAGGCAGTGGCCACAGAGGCCATTTTGAGTGTCAGAGCAACAGTGGGCC--------------TCATACCAAAGATAGGCTCTGCTAGGTGCATGTGCC-------------------------------------GATTGTCAGCCTGAG-------------CCAATCTCTTTGGACCACAGTCgtt--------------tgtttgtttgtttg-tttgtttgtttgtttgtttgtttgtttcgggacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcaaactc--agaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtgcaccaccactgcccagctTGGACCACAGTCTTTAGTTATCTTTTTTATGAGATAAAATGGCTATGCTAGAGGACCCCAAGACTCGCAGTGCTCCTGAGTGGCCTCTAATCATTTGTGTGTGTTCCCTTCTTTGTGTTTCTCACATCTGCCTCCCACCATCACTTTCTGCCAACACAAAGCATTATCACTGGGGAAACATTTCTTTGAGTTTACTGTCAGATGGAATACTGGGGA--CAGGGTTATGACCAAGAAATTGGGGATTTGGCTCTCTGACTTGGATTA--------AGAATTATGATGCAGGCTGGAAGAAAATGGAGCATTGGCTCAGAGAGTCAAACAAAAGA--ACT--AGAGACATCTAGACTTGATGGGATGAAAAAAG----AATGGAGAAAAATTTCCCTATCAAGCTTATAAAACTGGAATTTCTAACCAAACTCCTTATTCCTTGACCAAAAAATTTAGAAGAAAATGGGCTAAAAGAAAAAGCAGCATCCATAAGAAGGTAACAACACAAAAGGATGAAAAGTTATCCCTTGTTATAAAAATCAGGTTCTAGAAGACATGCTATAGACTAAGGAAAGGAAAGAGTCT---------------AGTG--------------AGATCCTTGGATAATGTGAGG-TTCTTTGTGACTTTGCACAACACATT---CAGGGTTGAAGTTCTCCCAACACACATTTATtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtt-ccctctccttcctccttccccctccctccttccctccctctctccttccctctttccctt--tcCTGCTGTG--GACCAAGTATGTCAT---GACCCAACTGCATATGCAGTAAGGGAAGAA
s HiC_scaffold_1 117577146 2507 - 233722169 aatctttttcatttattaattcccATGCGAACGTT---TTTTAACTATAGAAAGTGTGATAA------TTAGAGGAAGGGGAGATAAGTCCAAAGgatgagaaagaggaagaatacAGCAAAGATCATTGTCATGTTTGTGTGCTCATTACTACATCCCCGCCTTGGGAAAAAGGCCAGGTATACACTAGGAAGTGAATAAGGAGTTG--CTATTGAATTGTTTAAATATCCCCTTGGTTTGCATCTGAATATTTATGGctgaaaagatgaaaa-cagaagtGAGATCTTTTCCCCTT---TGGGAGGCCTTTCAAGTTCTAAATACATTATGTTCACC----------------TGAAAGCTTGGGAATTTTGGGG--GTAGCATAGCTGGGCAGAGACTGGGATGTACAGTGAGCCATGTTGGGAGCTATTCTTCTGCAAGGGGGT---CTTGAGCATTAGACAGGA---------------GAAAGTAGCAGATATC-----TCACAGTGGGGTA-GGACTGGGCTGGGGACACACATAAGACATCCATTTGGAAACTTCAGTAAGTACCTGGGACATTTTCAAGAGACAGGCTGAAAACTCTACCAGCTAATGAGGCTAGCC---------TAAGTTTCACATGGCATCACAGAATGACGATGTGTAAAAAATTTTACAATCA---CAACTCACTAATCACTTCATCCAGAAGTTTCTC--ATCTTCACAGAAGAAGAGAACCATGAGTGCAGCATGATTCAGTCTCCCTTTTCTCTCACATATCTAACTTTGAATTTATCTAGGTTGTTTTAAGTCTTTCTCATCCCTTATTCCACAGCCATCAGTATTGAGACTCTCCTTCTCTTCAGTTTTCAGGCTTTTG-TTGAAGGTAAAGCTTTTGTGCCTCTCCACTTAGTGTGTGCCTCCCTGTTGACACTCATGCCAAGTATCTTCTTGCAGTATTAATTGCTAGTCTTAGTAAGGGGCGGCTCTTCTTCTCCATTaggagaaaaaaagcattaaTTTAAATTCTAACTCAATTAAACCATGAGCTCATGAGCTCATGTTCTGTGGGCCAGGGCAATGGGTTGCACAGACATGAACAGAATAAAAATTGC--------AAACGATTCCCTCTTTCCCATCCAGGGATGActaacacagagagagagactatgtTTGTGCTCCAGTATCTTTCTTCAATTAATAAATCAGTAAGTTC-------AAAATCAAGCTTCTAAAAATGTTGAAAGTTTGCTGGCATTATTGGGAACAACAGGGTAATAACTTGGAATTTCAGAGGCGCTTAGTGATC-CCCACCGATTCTGAAGCTGAACTC---TTCTAATTTCTTGACATTGGGggaattttattcagttttatagAGAATAACAATGATCTTGGAGTCAGCAGATCAGAGTATACAGTT---CCTCCTCTGctcttgaaagaaataaaagaaaaatcctcATCAAACCTAAAGTTTGGACAAAATAATGGACAGTTGCTATA-AGGACATTATGAGTGGCAGAGGAGCTCTGGGCCAGGAATCATGGGGACCATTTGAGTGCTTGGTAACTGTAGGGGCATGGGTCACTCTTATTCTATGGCTCCttttctataaaacaaaatgactGT--GCTAGAGGATCTCAGGGATCCCAGGATCTCAGGATATTAATCTCTATATCAGCAAAAAGTACTTAAGCTCCTGCttcatttgtttgcttgtctgtttgtt--gagacagg--------ttatagttcaggctgatcttgaactcactgtataacctAGATTGGACTCAACTTcatagaaatcctcctgccttggcttcctgagCACTAgtattacaggtgtacaccaccac------------------------aactggctctT-------------------TGCTGGa---------------------------------------------tgtttgtt------tttctagttctctAATCTGCCTCCCACCACCACTTTCTACGAAAGCAGAATATTATCATTGGGAAAATGTTCCCCCAAGTTGATTACCAGGGAGGTTATTAGGAGTTCTAGAGTAT----AAGAGATCTGAAAGTCAGCCTTTTGACTGAGATTAGAGGTAGGAAAACCAAtacacaatattaaaaaaaaaaa----------cagagaa-aaagcaagTGATGATTGGAGGGGCATCCAGACTTGGTGAGATGGACAAAACTGTAATAGACAAAAGTGAGTTTCCTGAACTGATCAAAGCTGAAGTTTTTACTacact---------------------gttaaaagaaaa-----aaataaataacccagCCTTCA---------------ACAGTAGGATACCAAAATGCTCCCAGCAACAAGAATCAG--CCTAGAAGATGGGCTATGGGCTAAGGAAAGAGAATGGCCTTGGAAGAAGCTCACCAGTGCCGCAAACCAGGACAGATTCTTGAATACTGTGAGTCTTATTTGTGACTTCCTGTAACTGATTGCACAGGTTTGGGAATCTTCC--------------CTCTCCCtcatcctctccctctccctcatcctctccctctccctctccctctccctctccttcaccctctcctt-ctccctcaccctttccctctccttccctctcttcttccctccttcctttcctccttctctgctGACTCATCTTTTCCTCCAAACCTCTTCACATGTTCAGCAAAAGCAGAA

a score=18352
s chr3           107005351 661 + 160039680 TAAATTAGTGAAGGAACGATAAACTCATTCATTTATAGGGGGGTCTGCAGTGTACAATGAAAGCACAAGTGCTCCATTTTCTCATTCTCCGAAAGTATGTTTTAGCA-TTTCTTCCCTAGGACATCTCTGCAGATTCATTTCTCTGTGGATAAAATAAACAAGTACATCTTGAATGTTTGCACCTTCTTCCAAGAGCCTCCTGAGAAAGGGGGTGGGGCGTCCTGGGAAGGGCTGATATAGAGACCATTT-GCTCTGCATTGCCACCAGCCAGCCTGAAACACTCAGAAGCAAATGTCCCCAATCATCTCCCATCATGCAGAAGGCTTATTTTCTCACAGCTGTGTGAGACAAAAACAAGTCATTGATTTCTTTCCTGAGTAAGCCAAATTCCACTTGCAAAGCCTGTCTCA-AAATGAGTCCGGTTAAATTCCCATGGTTTTGTTCAGTAGTCTTTGACACATGCAA---AAAGACCACACACTTGGTTTTGTTTTGCTTTCTCTCTCAATCATCAAGAGAGAAAGCTGTCCATATGCGTGCAGATGACTA----CAATACAGCATTGTGACAGTGTGTTGCTGAGTCAGGATCTTTAAGTCAGGAGATACCAATGGCAAACCTCTCCTGAAAACATTAACGCAGGTTCTGCTGTGCCTGCTTCCCACAT
s HiC_scaffold_1 117579710 648 - 233722169 TAGATTactaaggaaattaaaatctcatCTGTTCAT--GGGAATTGGTTCTGTCCTATTATAGGATAGATG--------TCTTGTTCTCTAGCAATGcatttcatcaattttttttctggcaCATCTCtgtaaattcatttttatgtgaataaataaaacaaacacagctCAAACACTTATACCT-CATCTGAGGGTCTCCTAAGGAAGAGGAAGGA-----TTGGAAAAGTACTGTGTA-AGACCATTTTGTTCTGTGTTGACATCAGCCTGCCTAAAATGCTGAGAGGCAAATGTTCTCAATCATTTTGGATAGTGTGATAGACTTATTTGCTCACAGCTGTGTGAGATAAAAACAAGTAGCTGATT--TTTCCAGAATAAACTAAATTCCACTTGAAAAAAATACACCAGAAAAGGATCCACTTAAATGCATA-ATTCTTGTTTAGTATTCTTTGACATACACAAATGAAagacaatattc-tgtttttatgttattatttc-cCCAGAAACTAACAAAAACCTCTATcactgtatttataaataaataattcccaTATAAAATTATGACAATCCA-CACTGAGTGGGGGTCTTTAAATCAAAAGACACTAAGCTCCAAGTTCTCCCAACTGTGttaacttctcctttttcatgaaCATTTCCTACAT

a score=38934
s chr3           107008454 1775 + 160039680 TTATATttttcttctaatagatttacagtttgtgtattactttc--ttgtcttgagcacatgttgc----attttgttcatggcatgagataaagactcacttttatttttccacatataaatgtctggttttcctaataccatttcataaaggcactgccccaatacaagtttgtattcttggtacttttcaggtaccactcaatgatagaagagtgtttttctttgggggctttctattctgttctactgg--tctatgcctgattttaggacagtgttgtactatcttgattactgtagctttgtgatatattttgaaatgatgaagt-atatttccagcctttgtttttcctcactgtcaaagaatgctttgactattgtggctttt-tgtggactcatatatattttagaattactttttctgattctgtaaTGAATTAAGTGGTAAATATAATTCTTTCAATAGGAGA-GCACTGTTTTCCTCATAAAAACACCTCCTTCCATTGTG----TTATTTTCATATCTTCTTTTTCTAACTTCAGTAGTTTATATGAACCTTTATCGTCTATTGGTCAAGCCTTTGCTGTTTAAAGCAATGTCACTACATCTTGTTTCT-----ACAGGACAGTGACTCGAAT-CTTGAAAATA-------------------------TAAGACTACATATTTT--------------TATATCAGCT-----------------ACTGGATTTGTTTATGCATTATATAGTTCCAAAGAAGATTCAAGATAACAAA----ATAATG----AAATATACCATTCCAAA-GATAGCTGCAA--AAACTGCATCTG--TATCAAATACACCTAGGAGTTTGCTAGCAGCCAAGCCTAAGAAGAAAATAGGATGGTTGTATACAACTCTACATATCCTgaaaatgaagcatcagagagagagagagagagagagagagagagagagagagagagacatagacacacagagagagaggggggagagagagagagagagacGTGTTCCTGTACTCTTTG-CCTCTTCATTTTATTTTTCTAATAGCTTTTGGCTTATCACTGACTTCCCTAGGCTGCCTTAAGCAGGAACAACACAAGCCTTAGCATATGGCTTGCCAAGAACGAATTTTTTCAAG---AGTTGGACT-----AAaaagctaattcttga--atttttgtgcagcaagaatgtgcagtgttttacataaattatctgtagttctcacagtgtccctgagaaatgatataaatatttctacttcataaatgaataaactaagaaa---actaactt---tcctaacattacatatttattccaaagccaggcctatctgcatctaaatcttgcattttctccattAGTCAATAGCCAAACTCAACCCCCAAAATTATATAATTTCTAACTGTGTCTTGCTGAAAACTGCAGGCATATTGAGTCAGACAGAGAATCTCTCTGAATGTTTTGCATCTGACATTTTCTTAAAAACCAACACTGGGAACTGTTTTCATCTT--------------AGGAGTCGCAGGCACACATGTGAGCCGGGGGTGGGTTTGTTTTGTACACTGTAGCAATTATTCATTTGGGAGGGGGGATGAACTCCATACAAAGTGGATATGGATCCACTAGGTCTTGTCAAATGCAGGTGC------AGTACATCAAGTTTGAGTTGGCAA-----------AGTAGAGAGATTTACATCTCCAAAGAAATGTGTGGAAATGCATTAAAAACTAAAAAACATGACAGGAGTTGGGAAGTCTCTCTCCCTCTTGATTAGAGGGTTCTCTCAAATCAAGCCTTTTTACTCTCATCTCCAGGGCTGCTCACTGAGGCCAGACCCTTGTTGCCTCTCCCCTTTAATG
s HiC_scaffold_1 117583771 1715 - 233722169 ttatatttt-cttctagtagatTATAGTTTTAAGTATTACTTTAAATTGTT---AAtaccttttgatttgattttgtatcaCGTATGAGGTCTAAA------TTTATTATTCTGCAT-----------GTTCTCCTAACATTGTTTATTAAAAGGATTACCTTAATA-----TTTTACTGTCACT-CTTTTCAAA-ACCAATTGGCTGTAGACAGGCAGTTTTATTTCTGAgatctctattctgttccattggcttgtatgtctgtttttatGACAGTATCATAGCAT--TGATTAATATAGTTTTGTAACAT--TTTGATA----AAAGTGATACTTCTGGCGCTTTTCTTTT-----TACTAAAGGTTGCTCTAGATATTCAGTTTCTTCTGTG---------ATACTGTGGGACCTTTTTTT-----TCCACAATGAAATTTATAGAAAGATTAATTCTTCCAATGATAGAAGTCTTGTTTCCCTCATGGACAG---TTTTTCCATTacagcaattatttttaaatcttatttt----acttaaataattaTCCTGTACCTTACT---------GTCAG---TTTGCTACTCAAAGCAATACAAATAAGCCTGCTTTCTTTTCcacatgaaaaattttcaaatacttgAAGACAGTTATTAACTTCTATTTTTGAATGCTAAGTCCATATAATTTATTCTGCAAAGatctatatgatatttatattcataaatataatttatttcattaatgcaTTATATCTTTCCTATGAAGATTTAAGATGACGAACCTAAGGATGCAACAAATGTACACTTCTAAGTGGTTAATGCACTTAAACTAAGTTTGAATATTGAATAAACCTCTGAGTTT-CTGACATccaatactaa-aagaaaataagatgatttTACACAACCCtcattatcaagaaaaggaaacatca------------------------------------------------tacacaaaaaaa-------------------------tttttttcacagttctttGGCAACTTTATCATCTTTTTCTAAAAGCATCAGTTTTGTCAGTATGCTTCCTATGTTGTCAAAAACTAAATGAATTCAATTCTTCAAATATAGTTT-CCAAGATCAAGCTTATGAAAAGTAAGCTGGTCTTAAATGAAAAGCTGCTTCCTGAGTATTTTTGTGGGCCAAGGAAATACAATGTTCTACGTATATTATCTGTCATG-TCATAACAGCTTTTCAAATTGCTATAAATACTCTCATTTCACAAATGAGTAAAGTGGGAAATTAAGTAATTTAACCCCCAATTTTACA-----ATTACAAACTCAAGTCTATCTGTTTCAAAATCTTGTATTCCTCTCATTAGTCCGCAA--ATTCTCAACTGAAAGAATTAGATAATTTCTGAAGGTGACTTACTGAAAATCACAAGTGT-TTGAGTCAGAGAGAGAATATGGTTAGATGTTTTGGATCTGACATTTTCTTAAGAACCAACACTGGTAACTGTTTTCATCTTCTTCTGGCATCTTAAGGAATCACAGAAACACATGTGAACTgggggtggttttgttttgtacacTGCAGCAGTTACTCATTTGGG----------------------AGTGGATTTGGGTCCATTGGGTTTTGTTAAACACAGGTGCTTATAAACCAATTCAAGTTTGGGCTGGCAGAATCCAGGTTCAATACAGCGATTTACATCCctaaa-aaatgtatgaaaatgtatATGCAATGGAGCAA------------TGGGGAAATTTTCTCTCTGTTGACTACAGATATCTC---AATCAAGCCTTTTCTCTCT-ATTTTGGGGGCTACAGACTTAGATCATATCCTTATTATCTCTCCCCAGTAATG

a score=23506
s chr3           107012874 2347 + 160039680 AAAAATGATTCTA-TCAGTCACTTTCCT-------------TGTCAATTTCCATTGCTCCAAAGATCAACTTAAAATCTTGTAACAGGACACACCAGGCATtttactatctggcactaacctgtcactcccttccaatctctcttctctttctgtctccatactatttcttgctccagccactctgaccacaacattccacactgtggcctttcatatagcctgac-------catag-ttgttcattcttcctggaaatg------------ccct---cttttccttccttatct---cactctttaagattccatctaaaagttgcctctctagcaaggtatgtctggctttcTCTATCAAAATTGTTCTCTCTTCAGGGATATCACTGTCTTATAGGTACTAAATCATCCATGGTTTGCTCTCATTGCAACATCCCAAATGACTTCTATAAAACTGTAATC---TATTGTCCAAATGTATATTTTTCAAAGTCTG-ACAAAGAAA-GTCCTTATCAAATATTTCTTGGATAAATGTCTTCATTACTGTTACTGA------------CTGA--------------CCCATCCGGAGTGGACAGCTACAAACTTCAAAACTAAAATGAAGATGCTCTCCTAT-----------------------GACAAggcatgatagcaatcaccaataaccccag-caccgggaaagctgaaacagaaggatcagcacaagt--------------ctgagactagcct-----gaagtccacagtgagtttcaaaggcagcctgagttacacag--agagcttcta----------------tctcaaaataataaaGGAGGCAAAAAAGAAAAAAACAAAACAGCATACCTAATAAAA--AATAAAGATTCC-CTAGCTAAGAAATG--AGCAGCATCTCTGAGTCAATTAGTCCAAATAATGTAGTAAT---------------------GAATGGTAGTCATT-ATTACTAGAAAAACCAAA-----ACCATATCTGAAGATGACCCAA-----AATATATAGTGGCCCATATATAACAAATCATTGTTGATTAAAGCTTTTATAATAATGT--------TTTGTTTTTTC-----TTATGATAA--AATTGGCATATAAATTATGATTTCAAACAGACATA----------TAGATAAGTAAA---AAGAGTAAATTTAA---ATCACTCATGC-TCCAACCATCCAGGAAAAATTATTCTTGCTGATATTTGATATAAGTTCTTTC-------------------------------------CACACACAAG--------AAAGTGTACTATTT--GTTAGTATAACTATGTTTTTATGTGTTTTGTGTGTATT---GTTTTAGCCTAAACCATGACTATCATCACTTTGTTG----TGTCCATATGAAATAACAAACCAATATATTTCTATTTGGGGATA--TCAAACTTCCTACTAGTGtatatatatatatatatatatatatatatatatatatataCTAACAACTACTTTGTGCCAAAGGTCCTCCTAAAGGACTGTACTAATTTCTCACTAAGCAGCCATGTTTAAAAGTATCTATTTCTCTGTGAGTCCTACTAACTCTAGACATTTAGATTGTGATTTTTAAATAGAGAAAAAT----CTAATCT-----ATTGTATTTTATAGCTTTAAA-ATGATCTAGTTCCA-AGGTGCCAGCGAGAGTTACATCATTAGCAAT-GAATGTAACCAAAGATAAAGCTCTGCTCTTTCATCTGAGCCTATGAACTCTAGT---TACTCTCTTTGTCCTGTACATGACTTCTCCTGATGAGGACAGGTGCATCGTACTCATGATATTTAATGGTCCT-GACTCTCAGAATCATATCCTCTCCTTCCC--GGGTTACAGTTTTCCTAGCTATATTTGATTTCCTTtatgattttaatcctgtat-ctccccagaggtccctggagcaaaggccgagattccagcttggtgttactagaaggcaataagccctatgggaggtggggcagc-tgagacatcttcaggtgaatg-aggcatgctcccaaatagcgttgtg---------------atcttcctatcccttttacttCT-CAAGGGTGAG----------------AGAACAACTGCCCCAGGCCccaaaataaacctctttatggattaatttgttcta------gtattttgtttcagaaatggaaaactgacTTGCATAGGCATTTGAAGAAAGCAAA-CTTCCAGCTAATGAGGGCCAGATGTTCAAT-GTACCTCTTACTATTAATTGTCACTCAGATCCATA-ATCAGTCATTTGGGATAAGTGCTCTAA--TGAGTTTACCTTCAGGAAACTTACTGCCCCTGGCAAAGATTTCCAAGAGTAAAATTAGAGGTAAGATCCTAGATGATTTCCAAAGTTACTGTCCAACCATTACCTGCCCTAGTGTTCATTTTT---------------CCAGTAAGGTTAT-----------TTTAGTGAACTTCTCAAACCCA-CCTCTAGAAATTTTGTTCTGGAAGCCTGAGACTTTACACTCAAAAacttaagaatttgtactttttgagattttacaagtgattccagaataaggttaaacctgagaaccaGGC
s HiC_scaffold_1 117585573 2487 - 233722169 AAAAACAGTTCTAATCAGTAACTTTCCTGTTTATGAACCATTATCAATTTCCACTGCTCAGAAAATTACATTAAGATCCTGAAACACGGCACA---------TTACTATCTGGTATTAATTCATCACTCTAtccccatttcccttc-----ctttctccctaaTAG----------AGCTGACCT--TCTCAACATTCCAAAC-GTGG--TTTCTCACAGCTTCATGTGTCTGCATGGATTGCTTGATTTTCCTAGAAATGAGGGCCTTTATTTCCTAACCTTTTCTTTCCTTACCTACTCATTCTTTTAGTCTCTCTTGAAAAGCTTCTTCCCTATTAAGAtttgtctgatttttataatcaaattcctcccttttt---------------------------------tccatctttttctacc----------CCTATTTGACTTCTTTACAGCAGTAATCatattttgttcaaaaatttatttt-caaagtctacacaaagaaaagtCCTTGGTAAATGTTACATAAATAAAGTCCTCAATAAACGTTATTGAACAGATGTCCCACTGAGATTGCTACCGTACACCACCAGGAGCTGACACCTACAAACTTTGAAACTGAAATTAATGAGTCATCCTGTACATGAAATTAGTTGGATCAACTGACAATAGATAATAACCATCATGTATAGAAATAGACAATCTTAAAAATGCATTAGAAG-ACCATCTAAAATATAGTTCTAATGATCTAGATAtaactttagaaaaaataaattatgacttCTA---TCATAATGACTTATTTAGTTGTAGCTTATAAAATTAGcacatgaatttttataaaattaaaatcggtatgtagataaattttaaaatagcat------taaaatCACTCATAATCCAACCATTCAGGAAATGTCATTAACATTTTGGCATATCTTTTTT---ATACTGTATTAATTGCCTTTctgtttctggaacaaaatatttgacatttataatttaaagaagCAAAGGTGTACTTTGCcttatggtttcagaagtttgAGTCTATGGT-------------CAGCTAACTCCTAAACAAAAACATCATAGTAAGGTAACGGAAATTTGCCCTCTTATGGGTTCTCAAAACTAACTGTCAAAGAAGGGACCACTTCCCAAGGCCACACCCCATGACCTATCCAGTCACACCTAGAAGTGTGTTTTACTAATCTCTTAGATGTCCCTCAAGCCAATAAA----------GTTCAAAAttgagactctctctctctctctctctctctcacacacacacacacacacacacacacacacaaacaaacacaaaattgtacattttaagttaatata-------ttttaagtattttctataaaattgaattttaatttaaaccaTGACTACCATCACTCCGTTAGGTATGTTGGTATATAATAATGAATTACTCTGTTCTTGAACAAGACTGCTTTTAATTTTCCGGTGGTATTAGTAGTGACAAAGA-------------ACATACTTACAACTATCACTGCTTTGC-CAAAAGACCCCCCAGGAAGATTGTGCTAAGGTC-----------CCAAGGATAAAAGTGTTTG--------------------------AACATTTAAACTATGATTTTTAACTAGAAAATAGTGATGCTAATCACCTAAATTGCATCTTATACCTTTAAACAGAATGTATTTTTAGAAAGGGGAATGAGAGTTAAGTCATCAATAAAAGGATGCAGTCAGAGATAAAACCC--ATTATCTGTCTAGGTCCATG----TTAATGAATATTCTCTTTGTA----AAATAATACCTTGTGATGAAGATGGATGTATGAAGCTTATGA-ATTTAATGGTTCTTGACTCTGAGAATTATTAACTCCCCTACTTATGGGTTCCTCCTCACCTAGTTATATTTGAC--CTTTTCTAATTTGGATCATAGATGTTCCCCAAAGGTCCATGTGGTAAAGTCTTGTTCCCTAGCTtt-tgctgttgggaggtggtggacTCTTTCAGAGATTGGAGATTATAGGAGGTCTACCAACCATTgtagatattttcataaaattcattGTAGCCCTGAAGAAAGAAATCTGACTCTCCTGCATGCTTCTGCCATGATGGGCTGCCTTGCCAGCAACAGAGCCATT----CAAACATTGACTGAGAcctcttcctttaaaaatttacacTATGTTGAGTGTTTTGTTACATTAGCAGAAATCTATATAGCATAAGCTCATAGAAAAAGTAGGGCCTTTGACTACCAAGAACGTGATGCTCAGCAGTAGTTCT----GTGAATTGTTACTCTGATCCATGCGTCTGTCACTTGTGATAACTGGACTAAGATGAGTTGAC--TAAGATGAGTTATCACCTATGGAAAGACTTTCTAAGACCAAAATTAGAGATGAAATCCTAGATGATCTGCAAAGTCACTGCTCAAAAGTGACCTGaacatgtgtgtgtatttgtgtgtgtatgtgtccccgtgtgtgtgtgcatctgtgtgtttACAGAAA-TCTGAAACCTATCCTTGAGAAATCTGATTTGAGAAGTCTGAGAT----------AAGACCTACAAAT------TTTTGAAGACTTCATAACTGATTCTGATAGAATCTGAAGATTTAAAACCAAAC

a score=22898
s chr3           107018095 705 + 160039680 AGGCAAAGGATGATCAGAGTGAAGCCTCCAGAGGAAGAAAATGAT---------CTGAGCTGCAGAGACATCTAATTTCACAAGGGAAGGGGTAAAAATGAAGGGTCTGCTCTCAGTAAGCAGAAATGGGTGTACCACTGGGCTCTGTCGGAGGCCAA---------TAAACATACTTATAAAACCAAGATCGTTTTGAGTTTGTTTTCCTGTTTGAAAAACAAAGAAAAATATACTTGGAC----TTTTCTCTCTTTCTCTTTTTGAACATGGCATTAGCTGGCTTCCTCCACAATAAGCCCCCAAATAGAATGAATGCGTGAGAGGTGGGAGCAGGGAGGACAGCCCAATAC-AAAATTAGAACCAAGTCCTGGGAGGCAGCAGAATCCTGGATTCTTCACAAAATCTGTTCTCCAAATCTGGCTCCCAAAGCACTGCTCTTTTGTTAAACTGGCAGCAGTTGCCACTAGGAACCTCGACTGTGGCTCATGCTTGTCAATCTAGG-TCTCCAGCAATGAATTGATC---TTTAAAAAGTATTTTTTGCTCTTTCTACCCAGCACTGGACATTCCCCAGTCCTCTCTAGTCTCTCCTATGATTCTCCTTTCCCTATTATCgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAACAGACCATGAGCTAACCAAGGGAGAAACAAGTCCAGGCAAATGTTGCCTTTATTTCACAACT
s HiC_scaffold_1 117589528 652 - 233722169 AGGCAAAG--TGAATAAAGCTGagcttgagagagagagaaatggggagCCACTGCTGAGCTGCAGAGGGATTTAGTTTTACAAGTTAGAAAG-AACAGTGAAATATCTGCTCCTCGCAGAGAGAGATGAACACAGTGCTGACCTCTGCCAGTGATTAGGGGCAGCTGTAAATATCCTTATAAAACTCAGATAATTTggggtttgtttttctgtttcaacaatgaa--aatatatatttgggtactattttgtctctctctctttctggacaTAGCATTAGTTGGCTTCCTCCATAATGAACCCCCAAATAGAATGAATGCATGAGAGGTGGAAGCATTGAGGACAACCCAATACTAAAATTAGA------------GAAGCAGCAGAATTCTTGATTGTCCACCAAATCTGCTCTCCAAATCTGGCTTCCAAAGCACTTCTCTTTTGCTAAACCAGCAACAGTTGACACAAAGAATGTCAAGTGAACCTCACACTCCTGGATCTGGGCTCCTTGGTAGTGTCTGAGCCTGTTTTGAAAACCCCTGTTAGCCATCTCTACAGGACTCTTGAATTTTCTATCACCTCTCTATTCC------TGTTTGTCACATCTTTAT-----------------------------------------------------CAGAC----AACAAACCAAGGGCAAAACAAATACAAGCAAATGTTGCTTACATTTCATAACT

a score=84111
s chr3           107021022 2698 + 160039680 acgtgcatagtaat--gttttcttatttcatctgtagtgttaatttgccttttgaaatgtattac----ccacacactccatattatttaagtatatTATATTTAGCACTTTGTAGATAGATAATAGACATAAAAATTGGCCCTCATCTAGCTAGCCAAAATTATTTTTGATGTCCTTTCTTCAAAACAGAACTCTCTAATAGTCTGTTTTTGGAACAGGAGGCAACATTTGAAAAAACATATTAGATAAACATGGCAATTTTCAGTAGTTAAACATATTTATTGTGAATGTTGCTATTCTTAGCAATCATTATCTTAATACTTTCAAGCTATCCAGATCTATGCTTGTAAGAAATGGCAGTGTTTATTGAGGATTTTTAAATCTCTTATGCATCTTTAAAACAGCATGCAGAACTTTGATGATAGTGAGCTTTAAACCCTGTGTTAGCAATCAGGATTATTATAATATTAATTGGAGTTCCATGTCTGAAGTTTATTGCCATTCTAGAGACAGAGAAAAGAAATGATCTAAGTTAGGCCACAAGAATAAAAGAAATCACCTCTTGGTAATATTACTTCATTGGCCAAATAAAGATAGGCTGGATAAAAGAACATTTTTATCTCTTGCCAGAGGGCAGCCTCCTTGGCCCACTAACATCCTAATCTAAATCATGCTCTTAACTGTG--TGAGAGTCTGCATCAAGGGTTGGGCAATAGGCACACAATAGTTAATGCCATAGCTAAGAGCAAAGCATCCCCACTACAGGT-------TTCTGTGCCATCAGGCTGCCAGAGTGTGAATGAGGTGAAGCAGCCCCCAGGAGTTGCAAAGTCATGCAACACCCGCCTTCGTATTTCTCCTATTTCTCCTTGTTCACTCAAAAGAGTGTTATATGATATTTCCATATCTTGTGTCATGGGCCCACAAACCTCTAAATCTGGCATTTCC--TAAGCTGCACATCAGGGACAGTATTGCAAATCAATTAGATACATTTCATCTTTCAAATTAAATTAGCCGGTTTCCAACATGTCTTCTGTCCTTGAAGAATGATACATTCATCTTCTTGGTTA-CTTGACAGAAATTAGACTGACTGGGACTGAAGATGCTTCTCTGGTTCTAAATAATTGATGCTTAGCAGA--------------------------AGGGACCTTGCCTGTCTCTGCTGTACATTACACAAGACTTTTGTGGATTTTGCTACCTTAA-ATAAATATGAAAGTTTCCATTGGTGTATCTAAATTAGCAAATGCCTCCTCAAGCTT--------------------------TCGGAGGAGAACAGTGGGGAGGTGAT--AAAATACACCCAGGTTTGTCTTTATGGTACCTTTGTATTGGAACATATGCTAACAGTTC------------------------TGTTCAAATATAAAAGAAGCATAATTTTGCATGTTACATGC--TGTCTTAGAAATATCAGAGATCTGGGATGTAATAGAGA--ATGAGTATGTAAAAATAGGAGAAAAC-ATATAAATGGTTGCAGAATATAACCAGATTCTACTGGGACataaaataaaaaataaaaataaaaGATATGTTCAATTTTACCAGTGAGGTAGCTGCCTTGGTTAATCAAGAAAGTGAATAATTCATTAACTGTGCAATTACTATATAAGGAGAAATTCTTACTATGCAGAAAACTCCAAACAAGTCACCGAGGAAAGCAATCGTGAGAAA--CACGGCCATGTCCACATACTCTAACTGGAGAGATTACAAATACAAACTAACTCAGGGTTTTTCAAATGTAATGCTTTATTGAATGAGGAGATCATCCACTCACCAAGTGAACAGAAGAAAACAA-----AAAGCAGGCAAACTAAATGTACTACAGATATTCCATGGCCATGCAAGCAACTTCCTATTGCCATGTTTATTATCCTAGCAAAATAGTATCAGAAGACCCCACTT----TATATGGCATGTAGTATATATTTCTATTTACTACCTTAGAT-TACAAGGATTCAGTAA--ACTGAGAGAAAGGA-GTATCCCAATAATCTAGCCATCCTTGATATTTCCTTTGGCTCAAGCACACATCATTATAAAGAGAGAGCAAGCTGTTTGCTTATT-AGTTTCTCAATATCCAATCTTGATAATGTTACTAGACTATCCACAAAACACTGAAGTGCTCAGATGCACTTATAGTACTCTCAGTTTACATATTTTTAATGCAAGGATCT-AGAATATACTTTTTAGTTGGCACCTTTGACTCTATTCTTCAGACTAAGGTAGGCCCAGA------ATGCTTCAGTAGTCAGGGTAATTGAGTTTCAGCCCATTTATTTAGAAATCAACTTCAAAATGGAATGTCAGAAGTACTTACAGATATATTATCTTCCCAGACTATGCAGCCAGTATTATGAGGTCATAAACAGGCACCTACACCCATTAATAACCTGCATTATTTCAGCACATTCGGCTCATTTAGCTCTTACACATTGACATTTA-AGGGTCAAATCTCTCTTAGATTTGCCAGTTTTGTTCTACTAGGGTCAAGCAGGCAATGTTCCTAT-ACTGGTTCATAAACCTG-AGTACCGCTAGAGTTCAACCAGGGA-GCCCTTTCCTCAGCGTGATAGCATAATAA-GAAAAGTAGACACATCCACAGTGTGAGAACATCTACTTAAATCCACACTGGGATTAGCATAGCAGTAGAAATCAAGATAGGTCGGCCTCACCAAAGCATTG---CAATGTGGTTTGGAG---------AAGAAAAAGATTTCGACAGCAACTGCTGATGCAGGTAGCA
s HiC_scaffold_1 117590407 2702 - 233722169 ATGTgtttagtaatttattttctaccttaatttata---ttgattttctttttgaaacaaaggACATGTCCTCA-AttctattttatcttcatttattaTGCTTAATACTTGATAGATATACAATAGAAGTGTAAATTGGCCCTCATATGgccaatgaaaattatttctgacATGCTTTTTATAAAGCAGATCTTTCCAATAATCTGTTTTTAGAACAGGACGCAACAATCAAGCAAGTAAATCaggtaaaaataacaat-------gatttaCCATATTTACTACAGATGTCACTATTCTTAGTATTTATCATATTAATACTTTTAAGCTATCTAAATTTATTCTCATAA-AACTGGAAATATTTA---ATACTTCTAAAATCTCTTATACATGTTTAAAATACATTGCAGAAATTTGATGGTAGTGA--CTTAAAACCACTATCAGCAATGAGTATTGTTATAATATTAATTG--------------AAGTTtatt--catt----aaagagaaaaaagaaatgacc--agTCAGaccacaagaagaaaacaaatcactGCTTGGTAACACTGTTTCATCAGCCACAAAAAGAAAGGCC----AAATGCACAGTTTTATCTCCTGATAGAAG-CAAACTGTTTGGCCTGTTCACAATCTAAACTGAATTCTGTTCTTAACTATAGATGaaagttttaattaaaacttaaatAATGTATGTGCACTAGTTAACGATGCAGCTGAGAACAAATTAGCCCCACTCTATGTATTATGTTTGTGTACTATCAGTTTCT----GGTTGATAAAAGTTCACCAGCCCACAAAAGTTTCAGAGttgtacatccttgtcttttgtgttttttctactttcttttac-----cATAAACTTAGTAAACGATGTTTTTCTAGCTGGCGTCACAGGTCTGGTAAACTCAGAATATCATATTTTCAATGGGCAGTACACCAGAGACAGCATTACAAATCAATTagctatatttcatatttcaaattaAGTTATCTGATTTCTAACATGTCTACTGTCCTCAAAGAATGATACACTTATCTTCTTGACTAGTTTGGCAGAAATTTGGCTGATTGTCATTGAAGACTGTTCTCTGACTATAAAGAATTAATCC--AGCAGCTACTCTATATTCCAGCCCAAGAGTTTAAGGGTCATACCTGTATTTGCTCTATATTATACAGAAGTGTTACAGATTTTACTGCCTTTATGCAAACATAAAACTGTAGAC--ATTTATCTAAGATAGTAAATATCTTCTTAAAATTGTTATGATGCTTTGGGAATGGGTGGATGGGAATAAAACTATggggaaattattaaaaatatatatcaatgtTTCTTTACATTATCATCATATTGAAATTTAAGCTTGAAATCCattacctcagtctcctgaagaTTATATTTGGATGCAAAAGAAGCATTAACTT--------CATGCCTTGGCTCAAAAATTTTATAGATCTGGAACATAatgtaaattataaatatgttaaaatacaaggaaatgaCAGAAATGAGTGCAGGCCTTTATCA-ATACTAC----------ATTAGAGCAGCAAAAC------TATGATAAAATTTAACAGTGAGCTAGCTCCTTTGGTTAATATAGAAGACAAATAATTCATTAAGTGTTTAGCTAATATCTATGGAGA----CTTGCTAGGTGCAAAATGCTATGCAAGGCACTGCAGAAAGCAATCATGAAAAAAGCATGGCTCTATCCACACAATATATATGGAGAGATTATAAA-ACCAacatattttggaatttttaaatatgatgcTTTACTGAACCATGGGATCATTCACC---------------AGGAAACGTTTTTTAAATGTGGCAAACTGAATGCACCACA----TTTTATGGtcatataaacaattttatacTGTTACATGTATTATCTTAG-AAAATGAACTCAGAAGATTTTATTTATGatagattttatattatatatacattttttaacttCCAAAGATCTATCAAAATTCAGGAACAATTGAGAAAAAAGAAGTGCTCTAGTATGCTAAATATACTCAATGTTTCCTCTGAATCCGGCACACAGCATTATAAAAAGTAAGC--------tgcttatttaatttcttgatagctAGGATTGATAATGTAGCTGGACCATTTATGAGGCTCTAAAATACTCAGATGCTCTTAAAACACTCTCAGATTACACATTTTAAA-GTAAGCATTTTAGAATATTCTCTTTAACTGGCACTTTTGATTCCATTCTTCATATTGAGGTGGGCCCAGAGCCCTTATGCTCCAGAACTAGAAGTAATTGAGTTTTGGCCCATTTGTTTAGAAATCAATTTTACAATGGGGTGTCAGGAGTACCTAGGAAAGCATTATTTCCCAATGCTATCAAGCCAGAGTCATCTGGGCAT---------CTTATATTCATTAATAATAGTCATTACCTCAGCATGTTC---------AGCTCTTAGATGTTCACATTTAGAGAATTAAATATCTCCtagatttttccattttgtctta-TGAGTTCAGAAAAGCAATGTGATTTTGGCTATCTCTGAAGCCTATAGTCCTGAGAAGGCCTAATCTGAAAGGTCAGTTCCTCAATATGAAGGTATAAGAAGGGGAACCAGCCATACCTACAGTGTAGG--TATCTATTCATGTCCACACTGGAGTTCGTATAGCAGTGGAAATCCAGGCAGCTCGATATTGGCTAGGCAATGGGACCATGGTTCTCGAAGTATATCCTTGAAGAACAGATTCATGCAGCAGTTCCTG-TACAGTTAGCA

a score=87136
s chr3           107027952 4446 + 160039680 [encoded data, 5057 characters]
s HiC_scaffold_1 117593796 4578 - 233722169 [encoded data, 5057 characters]

a score=348988
s chr3           107032843 10739 + 160039680 [encoded data, 11665 characters]
s HiC_scaffold_1 117598399 10472 - 233722169 [encoded data, 11665 characters]

a score=62777
s chr3           107036500 1510 + 160039680 tgtggcagtggcggcggcgg---tggcggctgcgaccgcTACGAGCCACTGCCACCCGCG------CTGCCCGCCGCGGGC-GAGCAAGATTGCTGCGGCGAGCGTGTGGTCATCAACATCTCTGGGCTGCGCTTCGAGACGCAGCTCAAGACCCTCTGCCAGTTCCCCGAGACACTGCTGGGCGACCCCAAGCGGCGCATGCGGTACTTTGACCCACTCCGCAATGAGTACTTCTTCGACCGCAACCGACCCAGCTTCGACGCCATCCTCTACTACTACCAGTCCGGGGGCCGCATTCGCCGGCCGGTCAACGTGCCCATCGACATCTTCTCCGAGGAGATCCGCTTTTACCAGCTGGGTGAGGAGGCCATGGAAAAGTTCCGTGAGGATGAGGGCTTCCTGCGGGAGGAGGAGCGACCCCTGCCCCGCCGTGACTTCCAGCGCCAGGTGTGGCTGCTCTTCGAATATCCGGAGAGCTCCGGGCCGGCCCGGGGCATTGCCATTGTGTCAGTGCTGGTCATTCTCATCTCCATTGTCATCTTCTGCTTGGAGACGCTTCCCGAGTTTCGCGATGAGAAAGACTATCCCGCCTCCCCGTCGCAGGACGTGTTTGAGGCTGCCAACAACAGCACGTCGGGGGCCCCTTCTGGAG-CCTCCAGCTTCTCGGACCCCTTCTTCGTGGTGGAGACCTTGTGCATCATCTGGTTCTCCTTTGAGCTTCTGGTGCGGTTCTTTGCTTGCCCCAGTAAAGCCACCTTCTCCAGAAATATCATGAACTTGATAGACATTGTGGCCATCATTCCTTATTTTATCACTCTGGGCACTGAGCTGGCTGAACGACAAGGTAATG---------GGCAGCAGGCCATGTCGCTGGCCATCCTGAGAGTCATCCGCCTAGTAAGGGTTTTCCGCATCTTCAAGCTCTCCCGCCATTCTAAGGGGCTGCAGATCCTAGGACAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATATTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGCAGACGACCCTTCTTCGGGTTTTAACAGTATCCCGGATGCCTTCTGGTGGGCAGTAGTAACCATGACAACTGTTGGTTATGGTGATATGCACCCAGTGACCATAGGAGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCAGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAACTACTTCTACCACCGGGAGACAGAAGGGGAAGAGCAAGCCCAGTACATGCACGTGGGCAGTTGCC---AGCACCTCTCCTCTTCAGCCGAGGAGCTCCGAAAAGCCCGGAGTAACTCCACTCTGAGTAAGTCGGAGTATATGGTGATCGAAGAGGGGGGTATGAACCACAGCGCCTTCCCGCAGACCCCCTTCAAAACGGGCAACTC---CACAGCCACTTGCACCACGAACAATAACCCCAACTCCTGTGTCAACATCAAGAAGATATTCACTGATGTCTAAT
s HiC_scaffold_1 117666862 1502 - 233722169 TATGACAGTGGCCACCGGAGACCCAGCAGATGAGGCTGCTGCCCTCCCTGGACACCCACAGGACACCTATGACCCAGAGGCAGACCATGAGTGCTGTG---AGAGGGTGGTGATCAACATCTCAGGGCTGCGGTTTGAAACCCAGCTTAAGACCTTAGCCCAGTTTCCAGAGACCCTCTTAGGGGATCCCAAGAAGCGGATGAGGTACTTTGATCCCCTCCGGAATGAGTACTTTTTCGATCGCAACCGCCCTAGCTTTGATGCCATTTTGTACTACTATCAATCTGGTGGCCGGCTGAGGCGACCTGTGAATGTGCCCTTAGATATATTCTCTGAAGAAATCCGGTTTTATGAGCTGGGAGAAGAAGCTATGGAGATGTTTCGGGAGGATGAAGGCTATATCAAGGAGGAAGAGCGTCCTTTGCCTGAAAACGAGTTTCAGAGacaggtgtggcttctctttgaATATCCAGAGAGCTCAGGGCCTGCCAGGATTATAGCCATTGTATCTGTCATGGTGATTCTGATCTCAATTGTCAGCTTCTGTCTGGAAACATTGCCCATCTTCCGGGATGAAAATGAAGA-CATGCATGGTAGTGGGGTGACCT--TCCATACCTACTCCAACAGCACCATGGGGTACCA----GCAGTCCACTTCCTTCACTGACCCTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCTTTTGAGTTTTTGGTGAGATTCTTTGCCTGTCCCAGCAAAGCAGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCCATTATCCCCTACTTCATCACCCTGGGAACAGAGTTGGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCAATGTCACTGGCCATCCTTCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACATTCCAAAGGTCTCCAGATTCTAGGTCAGACCCTCAAAGCCAGCATGAGAGAATTGGGCCTCCTGATATTCTTCCTTTTCATTGGGGTCATCCTTTTCTCTAGTGCTGTCTATTTTGCAGAAGCCGATGAGCGAGATTCCCAGTTCCCCAGCATCCCAGATGCCTTCTGGTGGGCAGTCGTTTCCATGACAACTGTAGGCTATGGAGACATGGTGCCAACCACCATTGGGGGAAAGATAGTGGGTTCCCTGTGTGCAATTGCAGGTGTATTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCAccgagagacagagggagaggagcAGGCCCAGTACTTACAAGTGACAAGCTGTCCAAAGATCCCTTCCTCCCCTGACCTGAAG------AAAAGTAGAAGTGCCTCTACTATTAGTAAGTCTGATTACATGGAGATCCAGGAGGGAG---TAAACAACAG-----TAACGAGGA----CTTTAGAGAGGAAAACTTGAAAACAGCCAACTGCACTTTG---GCTAACACAAA---CTATGTGAATATTACCAAAATGTTAACTGATGTCTGAT

a score=53356
s chr3           107036591 1175 + 160039680 AGCGTGTGGTCATCAACATCTCTGGGCTGCGCTTCGAGACGCAGCTCAAGACCCTCTGCCAGTTCCCCGAGACACTGCTGGGCGACCCCAAGCGGCGCATGCGGTACTTTGACCCACTCCGCAATGAGTACTTCTTCGACCGCAACCGACCCAGCTTCGACGCCATCCTCTACTACTACCAGTCCGGGGGCCGCATTCGCCGGCCGGTCAACGTGCCCATCGACATCTTCTCCGAGGAGATCCGCTTTTACCAGCTGGGTGAGGAGGCCATGGAAAAGTTCCGTGAGGATGAGGGCTTCCTGCGGGAGGAGGAGCGACCCCTGCCCCGCCGTGACTTCCAGCGCCAGGTGTGGCTGCTCTTCGAATATCCGGAGAGCTCCGGGCCGGCCCGGGGCATTGCCATTGTGTCAGTGCTGGTCATTCTCATCTCCATTGTCATCTTCTGCTTGGAGACGCTTCCCGAGTTTCGCGATGAGAAAGACTATCCCGCCTCCCCGTCGCAGGACGTGTTTGAGGCTGCCAACAACAGCACGT---CGGGGGCCCCTTCTGGAGCCTCCAGCTTCTCGGACCCCTTCTTCGTGGTGGAGACCTTGTGCATCATCTGGTTCTCCTTTGAGCTTCTGGTGCGGTTCTTTGCTTGCCCCAGTAAAGCCACCTTCTCCAGAAATATCATGAACTTGATAGACATTGTGGCCATCATTCCTTATTTTATCACTCTGGGCACTGAGCTGGCTGA------ACGACAAGGTAATGGGCAGCAGGCCATGTCGCTGGCCATCCTGAGAGTCATCCGCCTAGTAAGGGTTTTCCGCATCTTCAAGCTCTCCCGCCATTCTAAGGGGCTGCAGATCCTAGGACAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATATTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGCAGACGACCCTTCTTCGGGTTTTAACAGTATCCCGGATGCCTTCTGGTGGGCAGTAGTAACCATGACAACTGTTGGTTATGGTGATATGCACCCAGTGACCATAGGAGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCAGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAACTACTTCTACCACCGGGAGACAGAAGGGGAAGAG
s HiC_scaffold_1 117778869 1160 - 233722169 AGCGAGTTATCATCAATATCGCAGGCCTAAGGTTTGAGACCCAGCTAAGAACTCTCAATCAGTTCCCAGAGACCCTCCTGGGGGACCGGGAGAAAAGGATGCAGTTCTTTGACTCCATGAGAAATGAATATTTCTTTGATCGCAATAGGCCCAGTTTTGATGGAATCCTGTATTATTACCAATCTGGTGGTAAAATCCGGCGGCCAGCCAATGTCCCTATTGACATCTTTGCTGATGAGATTTCCTTCTATGAGCTAGGTAGTGAGGCCATGGACCAGTTTCGGGAGGATGAAGGCTTCATCAAAGACCCTGAAACTCTGCTCCCCACCAATGAATTCCATCGGCAGTTCTGGCTCCTATTTGAGTACCCTGAGAGCTCCAGCGCTGCCCGTGGTGTGGCTGTGGTCTCTGTGTTGGTTGTGGTCATCTCTATCACCATTTTCTGCCTAGAGACACTACCTGAATTCCGGGAGGACAGGGA------------------GCTGAAGGTGGTCAAAGATCCTAGCCTCATCACAAACACAACAGTCCTTTCCCAGACC---ATGTTCACTGACCCATTCTTTGTGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTCGTAGTGTGCCCCAGCAAGACGGACTTCTTCAGGAACATCATGAACATAATTGACATTATCTCCATCATTCCCTACTTTGCAACTCTCATCACAGAACTGGTTCAGGAGACAGAACCAAGTTCT---CAGCAGAACATGTCCCTGGCCATCCTGAGGATCATTCGGCTAGTGAGGGTCTTCCGCATCTTCAAACTTTCCCGCCACTCGAAGGGGCTACAGATCCTGGGGCAAACACTGAAGGCTTCTATGAGAGAGTTGGGGCTGCTCATCTTCGTCCTCTTCATTGGAGTCATCCTCTTCTCCAGTGCAGTCTACTTTGCTGAGGTAGATGAGCCAGAGTCTCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCAGTGGTCACCATGACAACTGTAGGCTATGGTGACATGTGCCCAACCACCCCAGGGGGGAAGATTGTGGGCACTCTGTGTGCCATTGCAGGGGTCCTCACCATTGCCCTACCTGTGCCAGTTATTGTCTCCAACTTCAATTACTTCTACCACCGAgaaactgagaatgaggag

a score=9147
s chr3           107037130 482 + 160039680 GCCCCTTCTGGAGCCTCCAGCTTCTCGGACCCCTTCTTCGTGGTGGAGACCTTGTGCATCATCTGGTTCTCCTTTGAGCTTCTGGTGCGGTTCTTTGCTTGCCCCAGTAAAGCCACCTTCTCCAGAAATATCATGAACTTGATAGACATTGTGGCCATCATTCCTTATTTTATCACTCTGGGCACTGAGCTGGCTGAACGACAAGGTAATGGGCAGCAGGCCATGTCGCTGGCCATCCTGAGAGTCATCCGCCTAGTAAGGGTTTTCCGCATCTTCAAGCTCTCCCGCCATTCTAAGGGGCTGCAGATCCTAGGACAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATATTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGCAGACGACCCTTCTTCGGGTTTTAACAGTATCCCGGATGCCTTCTGGTGGGCAGTAGTAACCATGACAAC
s HiC_scaffold_1 116062662 453 - 233722169 GCCCTGTGGGGAGC-----GCTACTCGGTGGCCTTCTTTTGCCTGGACACAGCCTGTGTCATGATCTTCACCGTGGAATACCTCCTTCGGCTCTTTGCAGCACCCAGCCGCTACCGCTTCATCCGCAGTGTGATGAGCATCATTGATGTGGTGGCCATCATGCCCTATTATATCGGCCTGGTCA----------TGACCAACAA-----TGAGGATGTGTCTGGGGCCTTTGTCACGCTCCGGGTCTTCCG---------AGTGTTCAGGATCTTCAAGTTTTCTCGCCATTCCCAGGGTCTGCGGATCCTGGGCTATACCTTGAAGAGTTGTGCCTCTGAATTGGGCTTTCTGCTCTTCTCCCTCACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCCGAGAAGGGCTCCTCTGCCAGCAAGTTCACAAGCATCCCAGCCTCCTTCTGGTACACCATTGTCACCATGACCAC

a score=10844
s chr3           107037172 590 + 160039680 GTGGAGACCTTGTGCATCATCTGGTTCTCCTTTGAGCTTCTGGTGCGGTTCTTTGCTTGCCCCAGTAAAGCCACCTTCTCCAGAAATATCATGAACTTGATAGACATTGTGGCCATCATTCCTTATTTTATCACTCTGGGCACTGAGCTGGCTGAACGACAAGGTAATGGGCAGC----------AGGCCATGTCGCTGGCCATCCTGAGAGTCATCCGCCTAGTAAGGGTTTTCCGCATCTTCAAGCTCTCCCGCCATTCTAAGGGGCTGCAGATCCTAGGACAGACGCTGAAG----GCTTCCATGCGGGAGCTGGGGCTGCTCATATTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGCAGACGACCCTTCTTCGGGTTTTAACAGTATCCCGGATGCCTTCTGGTGGGCAGTAGTAACCATGACAACTGTTGGTTATGGTGATATGCACCCAGTGACCATAGGAGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCAGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAACTACTTCTACCACCGGGAGACAGAAGGGGA
s HiC_scaffold_1    905843 583 - 233722169 GTGGAAGTCGCGTGCATTGCCTGGTTCTCGGGGGAGCTCGCCATCCGTCTGGCTGCCGCTCCCTGTCAGAAGAGGTTCTGGAAGAATCCCTTGAACATCATCGACTTTGTCTCCATCATTCCCTTCTACGCCACGTTGGC----------GGTGGACACCAAGGAGGAGGAGAGCGAGGACATCGAGAACATGGGCAAGGTGGTTCAGA---TCCTCCGGCTCATGCGGATTTTCCGCATCCTGAAGCTTGCCCGGCACTCAGTGGGACTTCGGTCTCTTGGGGCCACACTGAGGCACAGCTACCATGAGG----TCgggctgctgctgcttttcctttCTGTCGGCATCTCCATCTTCTCCGTGCTGATCTACTCTGTGGAGAAGGACGAGCTGGCATCCAGCCTCACCAGCATCCCCATCTGCTGGTGGTGGGCCACCATCAGCATGACGACTGTGGGCTATGGAGACACCCACCCCATCACCTTGGCAGGGAAGGTCATCGCCAGCACCTGCATTATCTGTGGCATCCTGGTGGTGGCTCTTCCGATCACCATCATCTTTAACAAGTTTTCCAAGTACTACCA----GAAGCAGAAGGAGA

a score=5181
s chr3           107037611 139 + 160039680 CTGTTGGTTATGGTGATATG-CACCCAGTGACCATAGGAGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCAGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAACTACTTCTACCACCGGGA
s HiC_scaffold_1 116249730 138 - 233722169 ctctcagatatGGAGACATGGTGCCTAA--ACAATTGCAGGAAAGATCTTTGGCTCCATCTGTTCCCTGAGTGGCGTCCTGGTCATTGCCCTGCCAGTCCCTGTGATTGTTTCCAACTTTAGCAGGATTTACCACCAGAA

a score=30251
s chr3           107044971 1495 + 160039680 AGCAAAGATAGTGCCATGATTTCAGAT-----------------GCATTCTCTTTT-GCAGGAAGTG-GAATTCTCCTTATTTGAATAGAAATA---CTTCTCTATACCCCCTTTGAATTTTCTCTGTTCTCTTGGTTTCCCAAGCAAACC-AGACCAGTGCATGACCTGGATGTCTCCTCTGCATATCCAGGTAGTGCCATTTTCTCACTAAGTGTGTCAGCAAATTAAAA-TCAACATATGTGTTTGGATTTACGTATGTAGACCAGCAGAATGTGAAAACTCCTTTTAGCAGCTTGACAAATAAGCCTACATGAGGTAAAATA------CTCTATTCTGACAAT-ATTGTCA-GTCTTCTTAAAGAAATAACAGAAAACAAAAAAAAATAGAAATGAATACTTTTTATTTTTTCATG----CTTTTAATTT-----------TTTTAATtgtgtatgtatttttaggtaggtgggtgtgtcccacaataccag-------------------------tgtgaaggtca----caagacagttaactttcaggagttggttc-tctttttctgccatatgagt---tgtagga---------atcaaactcctgtcattgagcttggtggcaagtgtcttcacccactgat--ctatcttgctagTAGCCA--TCTGTCAGATTTCTAAATGGCCACGTTGACTGGGTAGATAAATCTAAAGAC--AAACTATTTCTCCCAG-AAAAACTGTATTTTAATTGCTTTATTTCTAGATTATATAGATCTTTTAGCTGCAAGTATTTTTACTGATTTGAACAGAACAGTTTACTGTGCTATGTAAAATTTAGATATTTTACTTACAGGCTTAGATCTGTGAATTTTAGATATGTATTAGTAGTGGACTTAAATATT-CCTGATATTTCTCAAAGTCAAGTTAGATTTCACAGGCTCATTTTCCAATGATTTTCCAGGGCTTTTTGACGATGTTCATATCAT-TCATATTGCTAACTTTAAGAACTGTTTGCTTAAACCTTTGGTTCCTTGTCAAGAGTTCATAACTTCCAAGACCTCAATCAGGTAACTGTAAAAAATAAAGCACTAAAATGTCCTAGTCTTTGGACTTAG----TATTATTTAGCTGGTAGAACTT-TAGAACTTACTGGAAATGTAGCCAATTTTAAGTCCTTTAATAGATGTTAAAATACAGACACATTGTGAGAACAGAG-----AAAAATCTACATTTTTTTTAGAATGACGTTGGCCCTCTCA---TCAGACACACATTGT-----------TCCATAAACTGAGTAT-ATTTCTTTCATTTAGTGA------GAGTTATGAGTTGCTTCTTTGCAGATGAATAATTATTAAACTTTGACCATCTTTG-------TTGCCCTTTTGAGTA------------GGTGTTTTTAGTTATAGGCCATCATTTTCTACAATATCTCCTGTACCTTTTTATATAAATGATTTTGATATTTAATGATTGTATTTTTCTTTTCAACCCACTTCTTATCCACTAACATAAGCATCCTTATTACTATCCAGATATCACCTGTTGTTGTTGTTGTTCCTATAGAATTACAACT-TTTCCACTTTTATAACCTATTAGG
s HiC_scaffold_1 117609406 1524 - 233722169 AGTGCAGATATTGCCAAGGTTTTAGGTAACACTGTGGTATGTGTGCTTTCCCCTACAGTAGAAAATGAGGGTTCTGCTGATG-GAATAGAAGGAAACTTTATCCAGAACTCTTCcgaattttctcc----------ttttccaggcAAACCTAAACCAAAGATTGACCTGGCTGTTTCCTCTTTACATC-AAGTGGTACAATTTCTTTACCAAATGtgtcaacaaattaaaaattaacctaTGTACTTA-ATTTATATATGCAGACCAGCAAACCACAGAAGCTCCTTTTATCAGCTTATCAATTAAGC--ACACAAGACCAAATATTATTCCTCTCTTCTGAGGATAATTGTAAgggctttttaaagaaatgacacaaaac--aaagaattacaatttgttaatttat-tttttccctgtttcCTCCTGGTTTGGGATGAGGGGTTAtaacattgtttatttttat-----------tgtctaatTCAATATCAGGTTTActagatttttctttataatttggtATAGTCAAATTTAAAACAG-----TCTCACAtgatgttacatttttatttgcctCATGTATGACTACAGAACAATAAAATATCAGATGCTTTT--------TTGGTATCTGATATCTGTAAGGAATTATAATTAAAAGCATATTAATCAAGACTGTCAGATTTCTGAAGGGCAA----AACTGTGAAGGCAAAACCACAGATAGAAATAATTCCTCCAAGTAAGAGCcgtgttttaattgttttatacCTAGATCTTATAGACTTTTTACCTGAAAATCTTTTAACTGATTTCAAAAGTGTAGTTTATTTTACTGTGTAA----------------------------CTATGTGAATTGAAGA----TATTATTAATagacttaaatattgcatgaag------AAATATTGATTATACTTCACA-ATTTATTGTCTCATGACTTCCCAA---CTTTTGACAAAGTTCACATCTTAGCATATTATTAACTTTAGTTACTA--AGTTTAAACCTCT-TTTATTTGTTAAGAGTGTACAATTTCCAAAATTCCAGTCAGATAATTCTACATAAATAGGCAGGAAATCTTTCTAGCCTTTGGGCTTATTCACTACCATTTAGTTTATAGAATTTGTGGAACTTAACTGGTGTGCAGCCAATTCTAAGTAAGTTAACAGATGTCAAAGTGTAgata---tgtgaaaacaaaattcccaTACATCTATATGTTTT--------ACTTCAATCTTTTCATCGTCAAGTAAATTTAGTGAGGCCAACAGTTAAGGAACTGAGTCTGAACTTTTTCAGTTAGGCATTGGTGGAGATATGAATGAGTTTTTAATGAACTGATGATTATTGAAATTGGACTAttcttgtcttttcttgttttatttgataTAACATTTATTCGATAAATTCAATTATAAGCCACCAATTCCTA---------CTGTACttctttattcaaa-aattttga----taatctttgttctttttctttcaaccAGTTTCTTAACCTCTAACATAAATATCATGATTACCATCCAAatactactt----tttttaaaatttctattgaaatgTAACTCCCTTCACACCTATAATCTCGTAGG

a score=202966
s chr3           107047251 7531 + 160039680 [encoded data, 8180 characters]
s HiC_scaffold_1 117610953 7669 - 233722169 [encoded data, 8180 characters]

a score=80875
s chr3           107060971 2664 + 160039680 AAAAAAAGCTTCTTGAAaatatttcaaactattgccgtattttgaattcta----actctaa-atgtttctctcttggaaattttctctcttaattttaaaaca--tgaacatggttgaggaaattaatctgtattttcaagtcagccactcttacctcgtgtagttgctgg--agaagaggaacttt-attattccaagaacctttggg--tcctcattttaagctttctggcttagaatcaggctatcagatttcatctcaagtgtaaTTTTATCCTCAATATTTAAACATTTCCAGTAGTTTCTAGACTTCATACTTTAATCTCCAATCCTTTGAAGTATTCTGCTCAGATAAGGGCTCTTGTGTTTAA------------ACTATAAAGGATTCAGCCATTGATTTCTCTATAAATTCCAGTCAAAATGACTTTCAGTT-AAAAATATACACACAT--------------------------------------------------------------------------------------------------------------------------------------TCTCTCATTCCTGTGAAATCTACTAGAAATTAGCCTACTTGAGGCTCCAAACACCaaacacaaaatggaaaattctggcaaggatgtgaagaaaaatgatacacagtcagtgagaatataaaataagatagccgtaatagagaccagtactgaggctcctccaaaaactaaaactagatctaccacatgacccagttactccacctctaggtgtctatccaaaggaaatgaaattagcatatcaaagagatgcc-acctcctggtgtttgttgctgtactagtcacaatagctaagttatgcaatcag-cccagtgcccatcagcaattaaatagacaaa----atgtgctagctgtg---tgtacagtagaatGGGCAGCATTAGGGGGGCCTTAGCTGACATAAA-----CCAGACATAA-AGGGAAAGTACAGTGCATTCTTTCTCCTATGTGAAAGCTCTACAACACAGTCAACCCAGATGTGGACTAATGATAAATACAGGTTGGGAAGACTG-AGGACAGAGTAGATAGAAGAAAACCGGATCAGGGCTTACTGTTACAAGTACTGAAAGTCTCTCACTTAACTCCACTGATGCATGCAATTAATACATACTACCAAAATAAAAGGTGACAGAATAAGACTTTAGTTGCTGGTAATTCTAGGTAAACT-----------------------CCTCCACAAAACAGAAAATAAGGATGTTTCTATCTGCATGAATGAAGA----ATATAGATTCTTGGAAAG--AAAAACTAACTCTGGGACTCGCAAATGGGTCTCGATACCCTATTCATCTCAAAGCTCTCAGGTCAATGAAACGGG-AGTCAGAGAGGCAAGGAGTGGGATGTAATTAGTGTGACTGGTGCTGGGGACTTGTTCAATGACAAATTGTGAGGTGGCTACTTTAAAGGGCTCCCAGAAGCTCTGGAGAGGCAAAGCTCTTCTGTCCTAAGGATAGGTTGCGGTA----TTCTCAGATAAGTCTCTTCTTGTCTCTTCCTAGTAAGCGTCTGTCAGCTGAGAAGTCTTTCATCCGGAATCCAGTTATGTGGTTTCAGTTCAAAC--CTTTTTGGTGTCTCTAAGCTCCCTAGCACTACAGCAAACTTT-GCATCTGGAAATGTGTCTTCATGCACAACCT-ATCACACTCTCCTATCCCCAGTCTGAATTGTCACTGGTTGAATGAACTGGCATTCTTCAAAAGCATTACTATCAGAGCAATTAATTACTCCTTAGCTGGCATCAACAGATCTCAAGTTTTGAGTCTTTT--------GAGACTGAACAGGTTTAAGAATCTGGAGGCAATGACAACTTTTACACACTAAGATAGAAAG----CTTCCCTGTGCTAAAGGGAACAGATTACATGGCTAGTTATCT---------GAACTGAAATAATCATTCTAATAAAATGATCACACACAGATGTCTTACCTCACTTTTTGAGTCACAGTTAACCTAAAATCCAGAGAGGAAGTCTACTTTACGTTTTTTCTAGTTTAACATATTTCTTCACAATTTGCCCATCCCTCTAAGAGAAGCTTGCAACTACCAGGACTTTGAAGTCACATGACTCACAACTATGAGTCACAGGCTGATTCATCCTACCAA-TAGCTAACCCTCCCATCTTACAATC-AGGCCTTTAATTCC---ACTGGTAATTCAGAAGCAAGCTTGCAGCTGTTGTGTATCACCATTATTGTTAGTTGTTAAAAGCATGTCAAGAGTATGGTCTGCTTCTGTTTTTCTTTTTAACAAAG--------------------CTTCTACTGAAATAAGAGCTTGTCAGAGATTTATAGTGGGAAAGCAATACTTTTAAGTGGAAGTTGAAATTCCCAGCTAATATTTTAATAATCGAGCCTTCATTTGGCTCAACATCACTTGTATTTTGATCCAAACATCATGTTTGTTAAATATTCTGACTAAATGAAACACGCCACCCCCAAAAGTCTTAGTAACAATCAGGAAAATAAAAGAGTAGTAAGTGTGTTAGATTCTGAGGGTT--AAGGACAAAACAAAG----------TGAGTAGTG-------AGGAAAAGCCCTTTCATGATTCAGACACCTCTGAGCTTTGTGCCCCTCCCCCAGATGATTTTTTTATATGCGCTTGTGTGACTTC---TGTCAAAACTTCAGGAAAAGAACG----GGCTTCT-------ATCTTTTATGCTCTCCTTCTCTCCTAGGTGTCTGAATGTGTCCGTGTTGGGTGATTCCAGCTTCATTTCAGACTGGGAAA---GTGAATCCCCTCTCCTAA--CCCATGCCAGAGTTCCAAGAAGTCTTTGGAAAGA
s HiC_scaffold_1 117623645 2822 - 233722169 aaaaaaaact----gaaactattTCAGTACTCAAAACTATTTTGAGTTCAATAAAACTCCAATATGTCTCTCTCTTGGAAATTTTCCCTCTTAATTTTGAAACACATGAATAGTTTTGAGAAAATTAATCTGTACTTTCAAATTAACCACACTTACTTCATCTAGTTTCTTTTTACAAGagttgtttttattattccagGAACATTTGGGGGTCCTTATTGTAAGTGTTTTACTTTGGAAACAGGAAATAAGATTTTATCTCAAGTGTAATTTTGACCTCCGTATTCAAACATTTCCAGTACTCTCTAGATTTCATACTTCAGTACCCAATCATTTGAAGTATGTTACT--------------TGTATTTAAGTACACAGGCCAAGTGCACAGGATTTGTTCATTGATTTTTCCAtaaattccaataaaaatgaCTCCCCattcaaaaatatatacacatgttctcattttttttatttagaggaaaaaaaggaaaacagaaaaagggaaataaataatacagaacttcaaaaataacagcaagaaatgactagtcaaaaataacagtaagaaatcattagttgataagttacatctCTCACTTTCATGGAATCTACTGAAAATTAACCTACATGAGGATGCAGGCACCAAATA---------AAATGTTggaaaagatacagagaaaaa-gatacaccat----gggaatgtaaattagtatatcAATTATGGAGAACAGTATGGAAGTTtttcaaaaaactcaaaatagatcTAACAAGCAAGCCAGTTAGTCTA--TTTAACtatatatccaaagaaaacaaaatcagtatACCAAAAAGTTTCCTGCATGTCCATGTTTACCATAGCACTGTTCAAAATAGCTGAGATATGGAATCAGGCCAAGTGcccaaaaatgaatgaatggataaagaaaatgtgttttatacACAATTTGTAGCAAAATGGATAGAACTAGAGGA-CATTATGTTACATCAAGCAGGCCAGACACAGGAAAGCAAGAACCACATGTTCTCTGTCATATGTGGAAGCTA-AAAATACAGTTGACCTGAATCT--ACTAGTGATTAACAAAGGCTGGGAACATTGTACAGGAAGGTAGATAAAGGAAGACTGCATTTGGTC-----AGCACATGTTCTGAAA-TATCACACTGAACCCCATTAATATGCATAATTAGAACACATTAATAAAA-AAGCATTGAC-TAACAACGTTTTAACTACTGATAATTTTTAGCAAACTAAGAGGTTTTAACTACTGATAATTCTgagcaaaactgaaaatatatat-tttccactTGTATTAATGGAGACCGAATTTAGACTATTGGAAAATAAAAGACTAATGCCAAAGATTGCAAATGGGCCTCAATCTCTTATCGA----AATTCTTTCAGGTCTATTAAATAAGCATTTGGGGAATCAGAGAGTAAGATATAATTAGTGTAGCTGGTTTTGGTGATTTATTCAGTGGCAAATTATAAGGCTGCTATTGTAACAGGCTTCCATAAGCTTAGTAAGAACAAAGCTCTTCTGCTTCATGGATGGGTCATGATAACCATTCACACATAgttctcattttatctttttgcaaTGATTATCTGCCAAATGAGCAACCTTTAATCTGGAATTCAGTTGTGTGGTTTCCATTTATATAGCCTTTCAATGTCTCTAAGATCGCAAGTGCTACAGAAAATTTTTgcgttttgaaatatatattcttGTCCATCTTTGTCATGTGCTTCCATCCC--ATCCGAGTTGTCACTGATTGAATGAAAAGGTACAATAAAAGGGCA------------------ATTTCCCCTCAATTGATATCCATGTATCTTGATACTTGGATCTTTTTGATAGGTGATATAGACCTTGTTCAATAATCTAGTAATGATGACAGCTTTTGCACACTAGGATAGATAAAATACTGCTTTGTGCTACAGAAGTTGTATTATATGGCCAGAAGTCTAAATCAACAGAATAAAGATGACCTTTCTAATGAAATCACCATACACAAATATCTTACCATGCTCTTTGAATCCTGGTTAA-------------------GTCTACTTCGCAGTTCT-CTAATTTGATATATTTA---ACAGTTTCCCATTTCCCCAAAGATAATCTCACAGCCACTGAGATTTTTAAATCACATGACTCGGAATCATGAGTCACTGGCTGAATCATCTTATAAAGTAGCTAACCCTCTCATTTTATAACCTACGCCTTTAATTCCTCCACTGATAATTCAGAAGTGAACTTGCAGCTGTTATGTATTACTATTATTGTTAGTAGTTAAAAACATGTCaagagt----------tttgttttaaattttaaaaaaaaaaaaaaaaaaaaccaaaatcttaGACTGGAGTAAGAGCTTGCCAGAGATTTATAATAGGAGAGCAATGCTTTCAAACAAGACTTGAAAGTTCAAGTTAATGTTTTAATAATTATGTCTTCCCTTGATTTACTTTCATTTAGATTTTGGTCCAAAAATCATGTCCTCAAAATATTCTGAATAAATCAAACAC----Catcaaaaaatc-----------caaagaaattataaa------------ttttattgagAACATTCAAAGTACAAAACAAAGTAATCCCACTTGACTTGTAAAACTCCAGGAAAGCCTCTTTTA-----CAGGCACCTCTGAGATTTttgacaaaaatcaaaacaaattatatata---gccttccttccttcacttgTCAAAACCTCGGGGAAAAAAGGATGAAGCTTCTGTCACTAGTCATTCTTCATCTCGCTCTCTCATGAAAGCCTCTTTCTATTAGTATCGAGTAATTCCAGTTTTACTTTTGAATAGGAAATGGGAGAGTCTCTAACTCTAAACCCCACACCTCTGCTTAAAGATATCTTTGGCAAGA

a score=30604
s chr3           107065393 1893 + 160039680 ACAATCCTACAAGGGAGATATTACTGATAGATAAGAGCACTCTTGTAGCCTATAAACAATCATGCCTGTG--TTCTGCCCCTGGTTTGTGCTGTCTTCTGTCCATCCTCAATGTTGCAAATCTTCCAGCTATTCCTAGTGATCTGGATATGTCATCTCAACTAAATGCAGTTAGAATTTAGGAGCTTGGTTTCCTCTGTCAGTGTAATAAAGTTAATAACAGCACACTTCACA---CCTCGCCTTCAACCACATGCAACATGGTTATTCTA-GTATAATCAGCCTGCTGTATTTTACAAGATTTGGCTTTCAGCTCTGTCA----GTGTACGTATCTTTAT-ACATATAGATTACATTCTGGACATGTGCTTAAA----AGTCTGAACAA-ACATATGTCTACCAAAGTGACTGTCGGGGGCCAGGGTGGGGGGGCTTCCCTATTCCCTAGCTAGAAGTCATGTTTGAGCCATTAGTATTCTGGTCAGAGAAGAAACCTCCTCTTGCAGAGCTGTGATGGAAGGGACTGCAGCTTTGTGCACTATAAATAGTCATTTTTATTAAAA-----------CGTTGAGAAATGGAAAAGAGGTA-GGGGTAAAGGAGTTGCCATGACAACTCATCCATTACCTCAGCTTTCGAAGACTGGGGAAGACTAAAGAATAGTAAATA---GAAAGAAAATAGAAGAAGCCGAAATGGCACATGATCACAAATGGAATGAAACAGCATTGAAAGAATCAtttctttctttcttccttcctttcttccttttcttttttcttttttcttttcttttttttttttttAGAATAGTCTCAAATTGAGTAATGAGCTGGAGAAACAAAGGATAGGTTTCATGAAGGGATGCCCCTCCTACAGAGCAAGGAGCCCACTAGA-GTACATCTTGCTCATTATCTT----CATAGCTCAGCCACA--------------ACACTGTCCTTAACAAATGGTGTGCG-ATAAGTGACAATTCCTTCTAAGGGGCCAGCCATGCTCCTAGCATCCTCCTGAAAACTGCTA--TCCCTCCAC--TCGGTGTACACGTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATATGAATTACAGAATCAGTATTCTCCATTCCCACTCCTCACTCCAGGA-------CTGGCTCCAGAAT-GATCAAGAGAGA--AGTCTCGACCAGAACGCCAATT------------------TTAAGT--------------ATCC-AAATGTACTATTCTAAAGACACGTAGTATAAAGGAATAATCTTTATTCATCACTTCACAGATTATCATATTCTTACACATTACCTCATT---CACAGTGCAGAGCCATCT------CAGCAATCTGGAATTTCTTCACTTTGCCAT--------GAATCTGATGAGCCAGC---TTAGACAGAACAACCTAAT----TGCTATCT------------------------------------------CCTGTA-----------------------------------------------TGCaaa----------------------------------------------------------------------aaaaaaaaaaaaaa-------------------------------------------------------------------------------aaaaaaaTCCTCATCTTTCCTGAGGAATGGATTCAGTGCTGATAGTTCGCACAATTTTC--AGCTGGTCTCAGTCACATATTGTGACAGTTCAAACTG--CTCTCTGCTCATTAATTAGCACTTCAGGG---------AGTCAGGGATGGGGATGGGC----------------------AACAGAAT-CAGTAAATTCAC------------------------------------ATAAGCAATTCTACATTGTTTCTCTTAGCAGGGAGGTCATAAGCAAAGTTAATCCTAGATCA-TTTTAAGGATTCTGTAGTACACTTTAAATATGCTAGATTGTGGCAGAGACTA-TAGCAGATGCTTAGTGTGATTTC--------------------------CCCCCATTCTCTGAAAGGGATAATGAAGGAAGTTCC----AGGGGGAAGGGGCGAGTACCAAAAACAGGTTTCAGATAATCTACACATCACCTTGCTAGAGTAG--AGCCATGGT---GCATACATCTGGGGTACC-----ACTAGACAAACCTCATGTACTAGGTAGTGGTCAAGAA----------------------------------AGACAAAAACCTTCCTTTGAGCAGGG-----TTCCTTGAGCTAGAAAACAAT-GAGGACAAGAGGAAGGAGTCTGCGTGGGATGCATATGTGATT
s HiC_scaffold_1 117627258 2451 - 233722169 ACAATCCTATAAGCTATATATGATGTACAAATAAGA-TACTCGCATAGTTTGCAAATAACGAAGCCTCTGCATTTTGTCATT---TCTTGCTGCCTTCTATCCACCTTCAACCCTGCAGATCTCCCAGGTATCCCCAAGAGCATCGCCATGACATCTCAGTCTAGTACAATTAGACTGCAGGAgctcagtttcatctcactgtgTAATCAAAGTAAGAACAACTTATTTCATATTTCCTCTCTTCCAGCTACAT-CAACATGCATATCTCATGTATATCCAA-----TGTAGTTTATAAGGCTGGG-TTTCAGTCCTgacaatatgtatatgtatcttcATTACATGCAAGGCAAACTGTACATATGAGCTAAAACAATATCCTAAAGAGCACATACGTTTACCAAACTGATAATT-----------CTAGAGGCCGTCCTCACTCCCGTACTGACAGCCATATTTTAGTCATTAGTATTCTAGTCAGATAGAAA--CTTCCCTTTCAGAGCGGTGGTGGAGGAGACTGCAGCTTTATGCACTATAAATagtga-ttttattaaaatgtagaaaaattgtTGAGAAATGGAAAAGAGATACAGGGT--AGGGGTTGCCATGGCAACTCA-ACATTCCCTCAGCTTTCAAAGAGTGGGGAAGACTAAGGAATagtaaataaaggaaaggaaatagagagagttttgatgacATGTGATCA-AAATGGAATGAGACAGCTCAGGGGG------------------------------------------------------------------------GAATAATTACAAATTGAGTGATGGGCTG--CAAACAAAGGATAGGCCTCATGCAGGGATGTCCTTCTCCAAGACTAAGGAGTCTGTCAGAGGTAAATTTTTGTCATCAGTTTTACACATGGCTCAGCCACAGAGGCTACCAAACCATATGGGCCTTGacaaataatttatgaataaataagtaTCCCTCACAAGGACCCAGGAA---TTCTGGTATCTTCCTGAGAAAATCCACTTCTCTCCACCATTAACATACACATTCTGAAcctattctttgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtttttcctttttatcggtcctggggatcgaactgatgactgcctgcttgcaaggcaggcgcttatgccgctgagctaaacctccagccccttctgTACCTATTTTAAGATACTGGTTTTAGAACCATCCCCTTTCATCCTTAC-CTTCAATCCAAGATTGTCATTTGACTCTAAAATAGATCAAGAAAGACCAATATCAACCAAAACTTTAGTTCACACACAAGATATTAGATTAATTCACATATATAACAAATCCAAAATATATTA--CTAAGGAAAACTTATATAAAAGTATAACAGTTATTCAGCACTT-AAAGATAGCTCAATATTCAcacattattttgtttgatacagGAAAGCCCCACCTACAGGAAAGCAAGCTGGGATTGCTTCACTTTACAATAGCCCATGGAACCTGGTGTGCCCACATGTCAAACTGAATAAAGTAATGATATGTCTTCTACTCAAGAATTTCCCAACTGAGGCCAGGCATGgggtcacacacctgtaatcccagcattgaggctgatcactgtgagttaaacTCCAGCTtcggctgcaaagtgagttcaaggccaacctgaactcaTAGTGAGTTCACTATGcatagtaagaccatgtctcaaaaagattaaaaaaacaaaaaagtatctTGCcacaagtatctgcctggcaaatacaaggtcctgagtttgaatccctgtactccctcccccaaaaaagaccaaaaacattCCCACCTGTtctgagaaa-gaattaaaagctgaTTGTTTACATGTTTTTTTAATCTGG-CTTGATCACACACTGTGACATCTTAAACAGCACACTCTTTTCATGAACTTCAGTTTGATggtttgtatatatacatacatgtgtgtatgcatgtgcataCATGCCTGTGTAAAAGAGAATGCAGCAGATACACAGAGATACAAGACGTGTTTATGTAGAAGACACACATATAGGCAGCTTTAAGTCATTTTTGTTGGTAGGGAGGAAATAA--AAGATCAtccaaaaatcatttttaaggaCTTTATAATTTGCTTC--ATATGTCTGATTG-GTTGGAGGTTACTAGAAGATGTTtgggataatttttaaataaggctTACAGAATATTTTCACCCAAATACTCTGTAAGAGATAGCAAGGGAAGCTACTTAGAGGGAGAAATGTCTGGGATTAAAAATTGGCACAAGATAACTCTGAGACTACTCTGCTGGATTAGAAAGCCATGGTGCAGCATTAACCCTAGCTGCCTCCCTACTGGATAAAACTCAT-CAGGGGGTAGGGTTCAAAAACACTGACATTGTGACTAAGGGCTGGGATCGCTAGAAAGAATGCCACTCCATCAAGCATAGTAAACTTCCTCAAACCAGAAAATGAGAAAGGACCAGAAAAAAGGGTCTGGCTAAAATG-ATGTGTGCTT

a score=33690
s chr3           107070172 2174 + 160039680 cagagctgtgagtcaaaataaactcttcctgttgttaagttgcttgtcttaggtatgctgtcatagtgatgaaaactgaTTAACACATCTTCCCAAATTTTGTGGCATTCATCATGTGCTATTATTTGTTTTGTGTGTTTATTTAACCTCCAGAATTAGGCTGAGGATTCCATGCTGTGAGTAGCAATTTTCTCACAGCACATA-ATATTCCTTAAACATAAAAAAGTCTTCATCACACAGCTGAAGAATAGGAGTGAGAT--GACCCTTCCTGTAGGAAATTCAATGT--------TTTCAGAATTCCTCTTCTCCTGAGACTGGAAAAGTGTAAGATGGCCCATTAATTATTTTATTTCATTATGTTCACATTGTATAT-TCTTTCCCCAGGCAGCCTAAACATTGACTGTTAATCTCTGTGCTGAAAGTCAGCCTTAGCATCATTCACAGCTACTAGTTACTGGATTTTGAGATTTGGACCACCAGAGCCAAAACTCCCAGTCTATGCAACTTCCTGTGACCTCTAGACTTGATGAGCCTTTCCTATCTCATCCAAACAAATATTGGTCATGGCCATTAAGCCACATCCTAGTAGTCCTGCCTACtgtcaggctctgtagtaagcataaatacttt---aaattcttcaaacctctccacaa-cctctgaagtgagtgctatg-cacctgtgttacagataaggaaattgaggcatggagaggttctgtggcattactgaactcaaacagctagagggag-agagctgaatttacattcatcttcagtgcccccacaccaccactatgctacaAGGAGATGCAAGTTCAAAAGGAAGAAATTTTACTTATAGGATTTGATGGTCCAAATCTCAAAATCAAGAGCTTGGGTTGGTTTTTATATGTTTGGCCAGACATGTACAGATGAATGCTTTCTTAT---------TGTTGTGCAATGGTTCATAGAGAGGAACATTCTGCATTTACATTCTGCTGTTTAGCTTGTATTTTAAAGGTTTGCCTTTACTTCCTAATGCAAACTCCCTGAGAGAGGACAGGACTCTCCACTTCAGTCTCACACTGACACATAGTCCA-GATTCACGCCACAG--------CTACACATTTTTGACTGAATTATATTTTCATGTTTAAGTCAGTACTCAAGTTATTCCTTTCTTTTAAAGTATCTGTTGTCTGCTTCTGCTCCTCCCAGCCTCCTGACACGCATTTATATCCTCACAGAGCAG---CACCTCAGCAGAACTCAAGCAAGTCAGCTCTGAATGTCAAAATGGAATTTTAAAT-AGTTATCAATTTGGGATAACCAAGAGAACAGCAAATAAATATCTCAATGAGGTCATGTCATGAAATACATGCAACCCTCTGTGACATGATGTTTAATTTGAAGTCGGTGGTCTGTAGAGTTCTTCAGCTACTTAGAACCAAGCCAAGAGCCATCAGACATGGCTGCAGATGTTGA---TACAT----------------TAGCTACAGAGGTAAGATATGAAAGCCATGG-----GGATGCCCAGAGAGCCGAGCCTGTAAAA---------------CTTCTACAAGAAAGGCAATCAGTTCGAGCACACACACAACCCCTGAGCCCTGCCATCCCATAACTATGCTA---------CCTGTAAGGACTTTAGCAAGTGGTTTCCTAGAAAGGTAAACTCTAGACCAGTACTAGCTTCCAGCTCTTCCACTTGCTTCAGGCCCACTACATGGGAGGCA----CACGGCCTAGGGGTGAGGCAGGGACTACTTACTGACAGATGTTTTCTGTTTGTCATGATATTTAGGTGTCAGGAAAATAGTTA---CAGAAAGAAAAAGAAAGGATGGGAGTGGATTGTACAAGAATGAAGATGCAGAAAGGGAA-------TGAGCACAACTGCCCCAGCATATGTAACTCACCT-CACTTTACCCAGCAGTCCTGAGTACACACATCATTATAGCACCATCCTCGGCTCCCAAGCATCTCCTCAGCTGTCTGCCTCTCTGTGCCCTCCAGACCTGATGATGATCCTGCCCACTCTCGCCCTGACTTGAGCTCTGCACGTCTGATGAAGAAGAGC--------TTACACTCACAACATAGAGA-TCtctgcttcctctcctcaaatagctcgttgaa-agtaaagatgggtctgttcttggcttagcatcccaagcacataaaacataT----------GAGCCAGAAAGTATATGAAGGCTTAGAACTCAGAACCTATATCAGTTATTC
s HiC_scaffold_1 117633418 1987 - 233722169 caaaagtgtgagccaaaataaccctttcctctt-ttaaactgattatctcagatattttttcACAGTGACAGGAA----GCAACATATCTTTCCGAAGTTTGTGGTATTCATCATGTACTActgttgtttttatatatttat-----------aaata---tatggcCTTCATGTCTCAAGCATCTATTTCC-CACAACACGTGCATATT--TTGTTCATAGAGGA-TTTTCATTATATGTTTGATGAATTGAATTGAGATTTGGCTC-----------AGTTCAATTCATCAACTGTCTAAGACTCTGTCCTTTCCTGAAACCAGTCAAGCAC-------TTTCTTACTTGTTCTactttttcatcttaaaattgGTTGTCTGTTTTCCCTTGTGACCTGAACATCTGCCGTTTGCCTATG----------------------------CAAATAGAAGTGTTTCAATCTTGGGA---------------------------------------------------------------------------------------ATAATGATCGCATCTATTGA------TCCCAG----CCCATCTAC---CAGACACTGCTAGAAGCATgcacatttttctaatttctttaaatCTCTCAGTAATCCAATGAAATGGGCGCTGTAATACC-------CAGCTAGGGAAATTGAAGTCCAGAGAGGTTAAGTGGTGTTTCTAAGCTCAAAACACTAATATGAGTGGAACCGGGTCACCATCCTACTCTCGGGTTCATACTTCACCACTATACTA--------------TTCAAAAG--AGACATTTTTCTCGCAGCTTTTGATGGTCCAAATATCAACTTCCA-AGTCTGGGTCGGTCTTTACAAGTTTGTCCAGATATGTAAAGACATGCATTTGATTGTGAGTGTCTGTGTGGCAGAATGTT---------GGAGGAGTTTATATCTCCATTCTGCTAATTAGCTAGTGTTC-ATAGGTTGTTCTTT----CCCAATGCAAACTTTCTAACAGAAGATAATGTTTTCTTAACTATTCTCAAATTGTAGTGTAATCCATGACTCCTGATACAGGTGGTAACCCAAACTTCTATAACAGAATTGTATTTCTGTATATAAGTCAGTGCCTAAG-----------------------------------CCACTCTTCCCAGCCTCCTGCCATACACCCACTATCACAGAGAGCAAGTATGCTTCaatagaacagaaacaaatcAGCTCTGAATgtcaaaacacattttttattcaattattaATTTGGAAGAACTAGAAGA--------TAAATATC-CAACAAAGTCATGCTATCAAGGATAAATAACC-TATCAAATCTTGTATTTAATTTAGACTCAAATGTCTGAACAGTTCTCCAGTTTCCCAGATCCAAGCCAAGGGCCATAAGACTTGCCTTGGGATAGCAACAGTGCATCTGTATAGGTTCCGTGTAACCACAGATGAATGAAAGGTTAACCTTCGTGAACAGATGCCCAGAGGACAAAGGCTGGAGGGCAGAGAAAAGTGTTTCTTCTCCAAAGAAACCAATCAACTTAAGCCCAGGCACCAAATCAGAGCCATAGAAGATGATATCCATATAAGTCACTCATCCAGTAAAGGCTTTGTCTAA-GGTTGTGCAGAA--GTA----------CTGAATTGGCTTCTTTCTGTTCAGCTTCCTTCA-GCCAGTTATACTGGAAACATAAGCACCTTCTAGG---------------ATCTATTCATAG-----------CTGTCATAATATTTATGTGTCATAATATTAAGTGACTCATAGTGAAGGCCAAAGAATAGAGGGGAAGAATAGAAGAGCAGAGGAGCAGAGAGGTAAAAGATTCAGAGCAGGAATGTTTCAGCTTGTTCACCTCACCTGTACCTTGTTAACCAGACTCTTACAGCCATGTCATTGTAGCACTATCTCCAGATTC------------TAGCAGGCTGCCTTCGTGTGGCTTTCATGCC---TGCTGATCCATTCCTTTCTCACTCAAGCTTCTGCACAGCATATTTCATATGCATCAACATGTTCTGCTGCGTTCATGATCCATAGACCCTCAGCTTTCTCTCCGT-GATAGCTCCCTGAAGAGTTAGAATATGTTTGCTCTTGGTTGAGCATCCCAAGTATATACACCAGGCTCTGCTAACAATGCcatgaaatacatgaaaatctAAGAGACAGAA--TTAATCAGGTACTC

a score=36825
s chr3           107075745 1638 + 160039680 CTGAtgaatcacaatttttccctctgagatttccatctactggtttcagttctaccacttacggctacaaggatcacacaacaccatcttccTGTTCTT---------------------------------ATCCT---------------GTAGACT-TTGCTACTCTGGCCCCTTTATTGCATGCATGCATGCTCCAACACATTCCAGCCTGATCACAGGATTACCAAGGTCCACTGCTTGGGCCT------TACCTTTCACACTTGGTCTGTG-----CAGATTAAGAGGGACTCCCAGGCTATGAGGACTCATCCAACAGCAGAACCAATGTCACTGAGCTTCCTTAGCAGCAAGGATTTACCTCAGTTTAGGTGAAGGCATTTAGAGTCCCCTAGCCCACCCAGACAGAGGTGTC--TCACTCTCATCAGTGTCACTTA-ATGAGGAATAATATG-GCAGCTACCATACCTTCCCACCATGGTCTTGAAAAGCTTTCCTATTCACTAGAATCCCTGCAGGGACTGCCCCGAGGTCATT-CTTTAACATCTGTGACTTGCAGACCTCACCTGGCTAAATACTGCCTCAGAGAAGATAACCCGTGG-TCAAAGAATCCAAAGTTCTGAGTTATGAAGCAAGTTCCATTCTCTTTCTGG--TGCCTCTTTTCTAATATTTAGAGGATATCTTCCATGGGTCCAGTGTAAAGA----------TCCATTTCCTGAGTGTAAAATTTTCAGTGTTCACAAAATAGTATGTGCAGACAATAAACGTGGCTGTAGCTGCCTGTGAGGACCAAAAACAAAGTGAAAACACCATGTGAGGACCATGAGTGTGGTGATAGTCACCAATGGGCCAGCTCCAGAGGGTCTGAGGAGTAACTCTGAGGACTCAGCCCAAAAGCTTTACC----------CTCCACAGTTATGAGCTCTACTCTTTGCTGAAAGGTTCTAGCTCTTTCTTTCAGCTTCCTTTGTGAAATGGGGAAACTGAAAATATGCCATGCATCTATAGAAACTGAGAAAGCCTAAGTGGCCTATCTTCTCTTTGCAGT-TACTTCTGGGCCCTTCTCCGTAGCTACTGCGGCTGAGGCTGCACCCAGTAGCTGGGTTTTCCCCCTGAGTGGTGAATCACAGATGTAGTTTCTCTAGCACAGGTTC---------TCAGAACGGTCCCAGCTGGGAGG-CCTGCTGGTGGCCAAGTGATCCATCCC----AGCTGCCATGCCTGAGACAGGGC-TCCCAGATGGTGCTAGGTGACAAAAAACAGGTCCTGGCCT--------GGCTACAGGACTTGCCTGTCCACTC-----AAACTCAGGATGTGATTCATCACCAAAGGTCCTGGGAAAAGCTGAGCCCATCAAAACCATTTTAGTCCAGCCAAATTTGGTAGAGAGCATTGCCACTACCACCAAAGAACACCCACCAATCACGGCATACAGTACAGA--------GGTATCCAGAGATGCTGTGTACCCACCAAGTATTTAGGCATCAAAACTGACAGAGCAATTCAGAAGATAAGCTACCCACTAGAGACACCCTACATTCAACATACAAAGATAAGTAAAACCT---GATAGACAAGCCAAACTTGCA--GGGTCAGGG-----------TAGGCCAGAACACAGACACAAACACTGTG-CTAGAAAGCATATTCCTC------------ATCTCATACAAAAGCATAACATCTGTGCACACCCAAGGATAGAGCCTCATATCAGCACCATAGCAGATTCAGG
s HiC_scaffold_1 117636579 1687 - 233722169 CTGATGAATCACAATTTTTTCCCATTG--CTTTTATCTTCTGGCCCCCATTCTGTCATCTGGTGCAATAGCAATTTGAAGACAC-ATTTTCTTGTCCTCTTCTCTGCATTGAATATGTTCAGCCCTTCCAGCATCCTCCTTTGGCTTAGTTAGTAGAATCTTGCCAGGCTGGTCCCTCTATTCCAAGCACA-----TCCTACACATTTCTGCTGGGTTGCATGACTACCAAAATCTACCACATGGACATACACTCTTCTTTCCATGTCCAGTCTGTGACATACAGA--AAGGCAGGCTCCCTGCCCACAAGGGTTCATCCAAGAATGAACTCAAATTCACTGGACTTCCTTGGCAATTGGGGATTGCCTCATTTGAATTGAAGAGATTTTT-GCCTCCTA----ATCCAGTAAGAGGTATTAGTCTCTGCAATGATTGTAACTCCTGTAGGAAATAATATCCACAGCACCAGTCCCTCCCCACTATGATCCTGCACATTTGTCCCCCTT-CTTGAATTCTTA-AGGAACTGCTCCAGAGTTATTTCTTTAACATACATGGTTTGCAGGCCACTCTTGACTGAGGATTCCTTCAGAAAAGACAGTCCATGGCTTGAATAATCTAATTTGCTGAGATGTAAGACAAGCCTCATTCTCCTTCCAGAATACCCTTTTACTAACATTTGGTAGATTCATCACA------CAGTGTTAAAAAAGTTTCACCCCCGTTTCCTGATACTGACATTTTCACTGGCCAGAAAATACCATGCACAGACTACAAACCAGGCTTTAGCTACATGTGGGT--------CAGATGGAAAA------------GCTATGGGT-------------------------CCTCAGAGAGTCAGAGGAGAAAGACTAGTGGCTCATCCCAAAGTTTCCACCTCAACAGCTGCTCCAAAGTATCTACCTCTTTTGTTTCCTGA-----CCCACCTCTCTACTTC---------TGTGAAATGGG-AAACTGCAAATCTGTAA-GCTTCTGTGAAAACCAAGAAATGCAAGACAGCCTATCTCCGATTCTCCCTCTGTTTTTTGGCTCTTCCCTGTGGCCTCTGGGACTTTAGTTGAGCTGAACAGCTGG--TTTTCCCCTAAGTCAT---TCACAGACATGGTTTTTCTGG-ACAGTCTCAGAAAAGTTTCAGAAAAGTCCCAACTGGGAAGACTTCCTGGTGGCCAGGAGATCAATTCCTCACAGCTGACAATCCAGTGATAAGGAATTCCAGCTGGTGCTAGGTGACAAAGAACACGTCTGTGCTTCATCCCTGGGCTAAAGGTCCTGTCTTGTTGCACTGGCGAGACTCAGGATGTGATTCATCATCAAGGATCCTGTGGAGCCCTTGGACCATCAAAACCACTCTAGTAAAGCCAAATTTCTGAGTACAAATAGCTACTACCACTAAAAAACATCAATTTATTCCTGCATGTGCTGCAGAATTCTGATGGTGTCCA---------TGTGCTCACCAAATGCTT-GGCATTAAAATTGACAGAGGTATACAGTGAAGAACATACTT-CCAGGGACCATCTACACT-AGCATAT-AAGACAAGTATTGCCTTTATAAAGGTAAACCAGACTCTCATTAAACCAAAGCAAACGAGTGCTAGACAAGATCACAAATGTTACCTCTGTTCCTCACTAGCAGAATCTTCTTATCAAACAATATCTTATATAGAACCACAATATTCAGGCAGGTCCAAGGGTAGTTGCTCAGATAGACA--ATGGTAGAGCCAAG

a score=7959
s chr3           107084656 422 + 160039680 TAAATATGAATGTTTTCCTAATCACATTACATGACTTTCAATACTCTTTGCCCACATCTCCCTCTTGTCATTTCACTTCCTGTCCACGTCATATG---AGCTTCTGCCCCTCTCA---CTTCCTCAATACAAGCCTGTCATGCTTGGGTTTTATAACTAAATTGGCCTTCAGACATCTCTTGTTTTATTTTAGATTTCTTCTCTGGGTGGATTTTGTTGTTGTTGGTTTGGTTTGGTTGGTTGGATTTTGTTGTCATTTTGTTTGTTTGCTTTTATGTTCCTTTCATACCCGTTTGCTCCAGGACTTAGTTAAACAACATATATTTGTTGAGCATATTGAGAACCAAATTCAATAAAGGGTAAAGAGAGCCCCAGGAGCTGCTCCTTTCTCAGGAAAAC-TTGTGATCTAGTTGTGAAAATAAAGACAA
s HiC_scaffold_1 117646241 344 - 233722169 TAAAGATAAATCTTTCCCTCATCACATTGCACAACTTTCAATACTGCTTCTCCACGTCCTGTCCTTGCTATTTCACTTCCTGTCTGCTTCATAGGAATAGGTGGTACCTCTCTCATTTCCTCCTCAACCCAAGTCTAGCCCTTATATTTTCTATAGGTAAATTAGCTCTTAGA----------TTTACATTagtattcttc-------------------------------------------------------------------------atttttcttcatcattCCTTTTCTTCA-GATTTATTTAATCTGTAAACATGTATTGAACATAGTGAGTGCCAAGTCTGA-GGAGCATGCAGAGAAGCATAGGAGTTAGTCCTGGCCCTGCACAGCTTTGCGATCTAATTGGAAAAAAGATAGCAA

a score=69839
s chr3           107088750 6762 + 160039680 [encoded data, 7702 characters]
s HiC_scaffold_1 117651900 6694 - 233722169 [encoded data, 7702 characters]

a score=15681
s chr3           107095537 1025 + 160039680 TGCTACAGAGTCCATCGGTCTGCTGGAATGCACCAGGTCACAATGCAGAGAAGCCACTCTTAAG-------TTAGACCAGACAGCAGAATATAAGG----AAGAGACATAGCCTTGCCTGT-----------------CTAGGAGAGGATAGTATGAAATGTAAACGGGACATCTCAAAACCTGATATAATAGGTTCATGTCCCAGACATAGAGTCAGTGGATAGAGAATCAGAGAGAGGGCCTGAGAGAC--ACAGCACTAAGT----------GAGTATTAGAAGTCGCTG---AGTGGCAGAGAGGGTGTTATGGTCTGGCTGGGG-AACTGCTAAAGCCAAAGCAGGAAGACTTACA---------------AGTTCTAGATGCTCCCATTGCCCATCACTGAAATGGACGTTC-ATACATATAT-----------------AGCAAGC----GGCAGAGGTA--------------------------------------------------------------------------------GAAAGGAATGGACCCCAAGCCTATCTCATCTCAGACCTTAGCCTTATACATCTAAATTAAGCCA-CTGGAACCTTCAAGCCAGTTTAGTC--ATGCCCATACAGACTTCTACAGAGAG---------GGACATG----------GAGGACAGAGGGCCTTGTTTGCCTTTTAGGAAATGCTGGTTGAGCA---CAGCAATAGGGAGTCAAAGAGGATATAAAGA---------CTTGCACAGGAGGAAGGTGACT-----------------ACTGACACTTTAAAGAGAGGAGGGCAGAAGGGCCCTAGTATGAAGGCAGAGGACCAAAATATGTTTGGGAAGGTGT--AACCATGCCCACTGGTGGCTGAAT----TGGGCCA------CACGGGGAGAAGTGGGGGAA------AGCATGCACAGATGCCAAGGCCACGTGATTGGCTGAATGTAGAGGATGTCTCCATGAAAGAGAAAGTGTGGATCGCATCATGACTCCCAGATGTCCAGATTAGACAGCTGGGGAAGTGGCAGTCTTTCTCAGCACAGGGAACAGGACATCAAAGTAGGCCTGGAAAGTGAAGCCCATGCAAGTCCTGAACAGATGGCAGA-TGTCCCAGGGAGCTTGTCATGAGTGTGGCAACAAAAAATGGCTTGGCTGCTTGGAGCCTAGGCTCGCAGGGCAGTCAAGTGAC--CTGTGGTC
s HiC_scaffold_1 117659334 1223 - 233722169 TGCCACAGATTCTATGCATCTTCTGGAGTTTTCTGGTTCACA----------GACACTGCCAAGGAATGCTTTGTGCCCAGCCACAGGCTGCAAAGCCACAAGAGAACTGGCTTTGTCCTTGGACTATTCCCCACATATTAGAAGGGGACAG------ATGCATGTT-----CCTCAAGACTTGGTGTGGTGGGCTTGTATCCCAGGCATACAATTAGTGCATAGA-AACCTGGGAGAGGTCCAGAAAGGTTTCCTGAAATATGTACAATGGGTCGAGTATCA-CAGTCATTGGATaatgggaaggaggaaggaggttTCTGGCTAAATCAGATGCTGGAGCCAAAGCAGAAAGACTTGAAGCCATCTGGAAACACATTTCTTGA-GTCCTTCTTGCAAGTCACTGTGATAAACGCTCTATGCATATTTTCTCTCTTAGTCCTTGGAGCAAGAATTAGGCAGAATTATTCCCATTTGACAACTTAGGACCTGAGATGCAGGAGAGAAAATTTCCCCACTTGTGGTCATGTAAGTGGCAAGCAAAACAGGTAGGAATCCATCTGAGGCCTGCCTCACTTCAGTAATTAGCCTAATTTGTCTAGTTTAAGTCAATTAGAGCCTTCATGGCAGTTTTGTGTGCTGCCTGTGCAGACTTCTAGCATGAGATTGGGATTGGGCATGCAAAGGTCCAGCAGATAGGGGGCTTTACTTGCCTTTTAGGAATTGCCTTTTAGGAATTGCAGCAATAGGGATCTAAAGAGGAATTAAAGAAGTGATGCATTTGTACTGGGATAGCTTGATTTGTGCTGTAGAAGAATTATAGCAACTATAGGAAGAAGAAACCAGAAAAGGGTTAGTCTGATTGGAGGGGACCAATAAGGGTTC---CAGGTCCCAAACCATGCCTA--AGTGGCTAAGTGGCCTAAGCCAGAGCAGCAGAGGAGAGAGTGAGTGAATCAGAGAGAGGGCACAGATACCAAAGCAAACTGGTTGGCTAGATGTGAAGGGT---CaggtggaggaggaagacaagcaCTGACAAGGACTCTCAAGTGTCTGGTTTGAGCAGCCAGGGAGTAGTATACCTGTTGCAGCACAGGGAATGTGAAGGACAGGTAGTCCTGAGAAGTAGAACCCATGGGAGAACTAGGCAGAAGACAGAGTGCCCCCGGGAGCCAG-CATGGACAAGAC--CAGGAGCTTCCTCAGCTACCTGGTGCACAGACCCAAAGAATGGTCAGgcaactgttgtagtc

a score=401058
s chr3           107100509 8829 + 160039680 [encoded data, 9408 characters]
s HiC_scaffold_1 117663179 8711 - 233722169 [encoded data, 9408 characters]

a score=63333
s chr3           107104181 1424 + 160039680 GGCAGACCATGAATGCTGTGAGAGAG--TGGTCATCAACATCTCAGGCCTGCGGTTCGAAACTCAGCTAAAGACCTTAGCCCAGTTCCCAGAGACCCTCTTAGGGGACCCCAAGAAACGGATGAGGTACTTCGATCCCCTCCGAAATGAGTACTTTTTTGATCGCAACCGCCCTAGCTTTGATGCCATTTTGTACTACTATCAGTCTGGGGGCAGGTTGAGGCGACCTGTGAACGTGCCCTTAGATATCTTCTCGGAAGAAATCCGGTTTTATGAGCTAGGAGAAGAAGCAATGGAGATGTTTCGGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTCCTCTGCCTGAAAATGAGTTTCAGAGACAGGTGTGGCTTCTCTTTGAATACCCTGAGAGCTCAGGGCCTGCCAGGATTATAGCCATTGTATCTGTGATGGTCATTCTGATCTCCATCGTCAGCTTCTGTCTGGAAACCTTGCCCATCTTCCGGGATGAGAATGAGGACATG----CATGGTGGCGGGGTGACCTTCCACACCTATTCCAACAGCACCATCGGGTACCAGCAG----TCCACCTCCTTCACCGACCCTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCTTACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCTCAAAGCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTGTCTATTTTGCAGAAGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCAACTACCATTGGGGGGAAGATAGTGGGTTCTCTGTGTGCAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCACCGGGAGACAGAGGGAGAGGAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCCCCTGA------CCTAAAGAAAAGTA-GAAGTGCCTCTACCATAAGTAAGTCTGATTACATGGAGATACAGGAGGGAG---TTAACAACAGCAAT--------GAGGACTTTAGAGAGGAGAACTTAAAAACAGCCAACTGTACCTTGGCTAACA----CAA--ACTATGTGAATATTACCAAAATGTTAACTGATGTCTGAT
s HiC_scaffold_1 117602112 1441 - 233722169 GGCAAGCAAGGACTGCTGCGGGAGCGCGTGGTCATCAACATCTCGGGGCTGCGCTTCGAGACGCAGCTCAAGACCCTCTGCCAGTTCCCCGAGACGCTGCTGGGCGACCCCAAGCGGCGCATGCGGTACTTCGACCCGCTCCGCAACGAGTACTTCTTTGACCGCAACCGGCCTAGCTTCGACGCCATCCTTTACTACTACCAGTCCGGGGGCCGCATCCGCCGGCCGGTCAACGTGCCCATCGACATCTTCTCGGAGGAGATCCGCTTCTACCAGCTGGGCGAGGAGGCCATGGAAAAGTTCCGTGAGGACGAGGGCTTCCTGCGGGAGGAGGAGCGGCCCCTGCCCCGCCGCGACTTCCAGCGCCAGGTGTGGCTGCTGTTCGAGTACCCCGAGAGCTCCGGGCCGGCCCGGGGCATCGCCATCGTGTCCGTGCTGGTCATCCTCATCTCCATCGTCATCTTCTGCCTAGAGACGCTGCCCGAGTTCCGAGATGAGAAGGACTACCCAGCCTCGCCATCGCAGGATG-CCTTCGAGTCAGCCAGCAACAGCA-CGTCGGGGCCCCCCGGGGGAGCCTCCAGCTTCTCAGATCCCTTTTTCGTAGTGGAGACCCTGTGCATCATCTGGTTCTCTTTTGAGCTGCTGGTGCGTTTTTTCGCTTGCCCCAGCAAAGCCACCTTCTCAAGAAATATCATGAACTTAATAGATATTGTGGCCATTATTCCTTATTTTATTACTCTGGGCACCGAGCTGGCTGAGCGACAGGGCAAC---------GGACAGCAGGCCATGTCCCTGGCCATCCTCAGGGTCATCCGTCTGGTGAGGGTCTTCCGCATTTTCAAGCTCTCCCGTCACTCCAAAGGGCTGCAGATCTTGGGGCAGACATTGAAGGCTTCCATGCGAGAGTTGGGCTTGctcatctttttcctctttattgggGTTATCCTTTTCTCCAGCGCGGTCTACTTTGCGGAGGCAGATGACCCCACTTCGGGTTTTAGCAGTATCCCAGATGCCTTTTGGTGGGCAGTGGTCACCATGACAACAGTTGGTTATGGTGATATGCACCCAGTGACCATTGGGGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCGGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAATTACTTCTACCACCGGGAGACCGAAGGGGAAGAGCAAGCCCAGTACATGCACGTTGGAAGTTGCCAGCACCTCTCCTCCTCAGCAGAGGAGCTCC----GAAAAGCACGGAGTAACTCGACTCTGAGTAAGTCGGAGTATATGGTAATAGAAGAGGGGGGTATGAATCACAGCACTTTCCCCCAGACCCCTTTCAAAACGGGCAATT--CCACTGCCACCTGCACCACGAACAATAATCCCAATTCCTGTGTCAACATCAAAAAGATATTCACCGATGTTTAAT

a score=51184
s chr3           107104189 1193 + 160039680 ATGAATGCTGTGAGAGAGTGGTCATCAACATCTCAGGCCTGCGGTTCGAAACTCAGCTAAAGACCTTAGCCCAGTTCCCAGAGACCCTCTTAGGGGACCCCAAGAAACGGATGAGGTACTTCGATCCCCTCCGAAATGAGTACTTTTTTGATCGCAACCGCCCTAGCTTTGATGCCATTTTGTACTACTATCAGTCTGGGGGCAGGTTGAGGCGACCTGTGAACGTGCCCTTAGATATCTTCTCGGAAGAAATCCGGTTTTATGAGCTAGGAGAAGAAGCAATGGAGATGTTTCGGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTCCTCTGCCTGAAAATGAGTTTCAGAGACAGGTGTGGCTTCTCTTTGAATACCCTGAGAGCTCAGGGCCTGCCAGGATTATAGCCATTGTATCTGTGATGGTCATTCTGATCTCCATCGTCAGCTTCTGTCTGGAAACCTTGCCCATCTTCCGGGATGAGAATGAGGACATGCATGGTGGCGGGGTGACCTTCCACACCTATTCCAACAGCACCA-TCGGGTACCAGCAGTCCACCTCCTTCACCGACCCTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCTTACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAGGCC--AGCAGGCCATGTCACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCTCAAAGCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTGTCTATTTTGCAGAAGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCAACTACCATTGGGGGGAAGATAGTGGGTTCTCTGTGTGCAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCACCGGGAGACAGAGGGAGAGGAGCAG
s HiC_scaffold_1 117778857 1175 - 233722169 ATGAAGGAAATCAGCGAGTTATCATCAATATCGCAGGCCTAAGGTTTGAGACCCAGCTAAGAACTCTCAATCAGTTCCCAGAGACCCTCCTGGGGGACCGGGAGAAAAGGATGCAGTTCTTTGACTCCATGAGAAATGAATATTTCTTTGATCGCAATAGGCCCAGTTTTGATGGAATCCTGTATTATTACCAATCTGGTGGTAAAATCCGGCGGCCAGCCAATGTCCCTATTGACATCTTTGCTGATGAGATTTCCTTCTATGAGCTAGGTAGTGAGGCCATGGACCAGTTTCGGGAGGATGAAGGCTTCATCAAAGACCCTGAAACTCTGCTCCCCACCAATGAATTCCATCGGCAGTTCTGGCTCCTATTTGAGTACCCTGAGAGCTCCAGCGCTGCCCGTGGTGTGGCTGTGGTCTCTGTGTTGGTTGTGGTCATCTCTATCACCATTTTCTGCCTAGAGACACTACCTGAATTCCGGGAGGACAGGGAG-------CTGAAGGTGGTCAAAGATCCTAGCCTCATCACAAACACAACAGTCCTTTCCCAG------ACCATGTTCACTGACCCATTCTTTGTGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTCGTAGTGTGCCCCAGCAAGACGGACTTCTTCAGGAACATCATGAACATAATTGACATTATCTCCATCATTCCCTACTTTGCAACTCTCATCACAGAACTGGTTCAGGAGACAGA--------ACCAAGTTCTCAGCAGAACATGTCCCTGGCCATCCTGAGGATCATTCGGCTAGTGAGGGTCTTCCGCATCTTCAAACTTTCCCGCCACTCGAAGGGGCTACAGATCCTGGGGCAAACACTGAAGGCTTCTATGAGAGAGTTGGGGCTGCTCATCTTCGTCCTCTTCATTGGAGTCATCCTCTTCTCCAGTGCAGTCTACTTTGCTGAGGTAGATGAGCCAGAGTCTCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCAGTGGTCACCATGACAACTGTAGGCTATGGTGACATGTGCCCAACCACCCCAGGGGGGAAGATTGTGGGCACTCTGTGTGCCATTGCAGGGGTCCTCACCATTGCCCTACCTGTGCCAGTTATTGTCTCCAACTTCAATTACTTCTACCACCGAgaaactgagaatgaggagaag

a score=8643
s chr3           107104583 687 + 160039680 GCCTGCCAGGATTATAGCCATTGTATCTGTGATGGTCATTCTGATCTCCATCGTCAGCTTCTGTCTGGAAACCTTGCCCATCTTCCGGGATGAGAATGAGGACATGCATGGTGGCGGGGTGACCTTCCACACCTATTCCAACAGCACCATCGGGTACCAGCAGTCCACCTCCTTCACCGACCCTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCTTACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGC-AGGCCATGTCACTGGCCA--TTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCT----CAAAGCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTG-TCTATTTTGCAGAAGCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCAACTACCATTGGGGGGAAGAT
s HiC_scaffold_1    905716 609 - 233722169 GTCAGCCAAGCTCATTGCTATCTCGTCCCTGAGCGTGGTGCTGGCCTCCATTGTGGCCATGTGTGTGCATAGCATGGCAGAGTTCCAGAACGAGGACGGAGAGGTG-----------GATGACCCT---------------------------GTGCTGGAAGG----------------------------TGTGGAAGTCGCGTGCATTGCCTGGTTCTCGGGGGAGCTCGCCATCCGTCTGGCTGCCGCTCCCTGTCAGAAGAGGTTCTGGAAGAATCCCTTGAACATCATCGACTTTGTCTCCATCATTCCCTTCTACGCCACGTTGGCGGTGGA---CACCAAGGAGGAGGAG-------AGCGAGGACATCGAGAACATG-----GGCAAGGTGGTTCAGATCCTCCGGCTCATGCGGATTTTCCGCATCCTGAAGCTTGCCCGGCACTCAGTGGGACTTCGGTCTCTTGGGGCCACACTGAGGCACAGCTACCATGAGG----TCgggctgctgctgcttttcctttCTGTCGGCATCTCCATCTTCTCC-GTGCTGATCTACTCTGTGGAGAAGGACGAGCTGGCATCCAGCCTCACCAGCATCCCCATCTGCTGGTGGTGGGCCACCATCAGCATGACGACTGTGGGCTATGGAGACACCCACCCCATCACCTTGGCAGGGAAGGT

a score=9944
s chr3           107104765 536 + 160039680 CTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCTATCATCCCTTACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCCATGTCACTGGCCATT------CTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCTCAAAGCTAGCATGAGGGAATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTGTCTATTTTGCAGAAGCTGATGAGAGAGATTCCC---------AGTTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAACTGTAGGCTATGGAGACATGGTTCCAACTACCATTGGGGGGAAGAT--AGTGGGTTCT----CTGTGTGCAATTGCAGGTGTG
s HiC_scaffold_1 116062688 506 - 233722169 CCTTCTTTTGCCTGGACACAGCCTGTGTCATGATCTTCACCGTGGAATACCTCCTTCGGCTCTTTGCAGCACCCAGCCGCTACCGCTTCATCCGCAGTGTGATGAGCATCATTGATGTGGTGGCCATCATGCCCTATTATATCGGCCTGGTCAT-------------------------GACCAACAATG-----AGGATGTGTCTGGGGCCTTTGTCACGCTCCGGGTCTTCCG---------AGTGTTCAGGATCTTCAAGTTTTCTCGCCATTCCCAGGGTCTGCGGATCCTGGGCTATACCTTGAAGAGTTGTGCCTCTGAATTGGGCTTTCTGCTCTTCTCCCTCACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGC---------CGAGAAGGGCTCCTCTGCCAGCAAGTTCACAAGCATCCCAGCCTCCTTCTGGTACACCATTGTCACCATGACCACACTGGGGTA---AGTCAGTGTTACTGGACCCATCAGGGTAGAGGCTGGGTGGGCTGTGAAGCTTTGTGTGGTGTCAGGGGTG

a score=4501
s chr3           107105232 140 + 160039680 TATGGAGACATGGTTCCAACTACCATTGGGGGGAAGATAGTGGGTTCTCTGTGTGCAATTGCAGGTGTGTTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCACCGGGAGACAGAGGG
s HiC_scaffold_1 116249738 138 - 233722169 tatGGAGACATGGTGCCTAA-ACAATTGCAGGAAAGATCTTTGGCTCCATCTGTTCCCTGAGTGGCGTCCTGGTCATTGCCCTGCCAGTCCCTGTGATTGTTTCCAACTTTAGCAGGATTTACCACCAGAAT-CAGAGAG

a score=278096
s chr3           107110234 9242 + 160039680 [encoded data, 9918 characters]
s HiC_scaffold_1 117672029 8996 - 233722169 [encoded data, 9918 characters]

a score=28018
s chr3           107120304 1030 + 160039680 GAAAGCATGACTCAAATCCAACCATGGTTAAAAGAACACCAGCCACATAACCACATGcaggccttgtgcttggcactttgcctgtgcaatctcttttaattctcacaatgctgtgaggtcactgtcactatttgaatttttagatgaggaattaaaaatgcagaaaggcacattaat-acccacacattcacagctaatgagaagcatattcagtactcaaatctggAAGTCAATGGAAC-CCAGGACATGAAACCAC------CTTGGTGGGGCCAACATCCAGGTGACAGTAATACTGCAGT------AACACCAGCCAAGGACACTGACTCTATTCCCCTGAGCCCTGCAATATATGGAAGTCTCCGGGAAAATGCAGTAATGTGACCATCTCGATGCCTTGGGGAAAGAGTCAGAAAGTCTAGGGATTACAATGTGCAGCAGAATTGGATCACCTTCCTTGGATATTTTTGTCAATGGCACTCATGAGGCTGCAAGGTGTGAATGAGCAATTGCTATATTAAAAGTTCCTGAAAAAGCTTTCTTCCCTTGGGCCCCAGCTCCTGAGAAAGAGAAAAGAAGAATGG-----GGCTGCTCAGCCTCTTCCCTAGGTCC-CCTCTTCACTCTGCATTGTCAAGGTCCAGGAAGCAGTTAAAGGGATTGTCTA---CAGCACCCTTCCCTTTAGATCTGATA----GAGTCAGATC-----TTATAAGCAGT--GGTAAGAGCAGGAAGA-ATGCCTTCATGGGGTAACCATGAAGCAAAAATGAGA-----AAGTCACTTAACACAATGTCTGCCATACAATAAAT-----------GACACCTTCTGCTCAGAG-GAGGAAG-------------------CGCCCTGTAAACCATTG-TACCCAGCCCTGCGCCCATGGGGTTGCAGTGG--CCATCTCTGGTTTTC-TGTCTGTGTATTTGGGcttactgagtcccaacttcctcatctacaaaatgaggtgacatcacttaccttcctaactgttgaaatgataaggacctcatataacataCCTCTTAGGGAGCTGACCGATCATCAGTAGTTAAAAATTACTGTAAGT
s HiC_scaffold_1 117681274 1061 - 233722169 gaacaaatgatttaaatttcACTAAGTCGTAAGGAACAC--------TAACCATGTGGAGGCACAATACTGGGCAGTTTGTCTGTGTTACCTCATTTAACTATTACTACTCTGTAAGGTTGTTGTCACAATCTTAACTTTTAGGTATAGAAATTGAGACTCAGGGAAGCAATGGAATTGTCCACACA----CAGCTAAAGAGAGGAAAATCTAAGAATCGGATTC--AAGTCTTTGACACGTCCTCATATGAAATCATAAACATCTTGTCAGGGTAAATGCTCAACTGATAGTGATGTCCTAGCCAAAAAAACACCAACT-----CACCAAATCCATGCTGCTAAACCTTGTGATGTCTAGGAGCCTCCAGGAAAATATGAGAATG---------AGGTATCTTGGGGAAA-AGTCAGGAAGTGTGAGGAGTACAAGGTGCAATGGAATTGGATCACcctctttgaatatttttgtca----------tGAGGCTGAAAGGTGTGAATGAACAATTGCTATATTAAAAGTTCCTGAAAAAGCTTTCCT-CCTTGAGCCTTAATTcctgagaaagagaagagaaataaggTGGGAAGGTTCTGAGTCCTTTCTTTAGCCCCTCCACTTCATTCTGCACTTTCTGGACCTAGGAAATCAGTGAAAGGATTGCCTATACCAGTACTCTTACTCCTCCCTCTGGCAGCCTGACCCATCTCCTTATTTATTGCCAGGGAGATGGAAGCTGCAAAAGATATTCTCATAGTTCATCCTTGAAG-ATGAATCAGATTCCCAAGTTATACGAAAAGAAGCTTGACATGcaataagtgctcaataaaagGTGCCTGCTGTTTTAAGTGAGGAAACCTACCCCCCTAATCCCCCCACCCCACCAATCAAGGATCCCCAGCTCTGGATCC-TGGATCTGCATTGAATCCAACCATAGTTTTTATGTCTAGGAAATTGTGCTTGCTGAATCCCAACTGCCTTGCCCGTAAAGTGGAGTAACACCACTCATCTCCCTGA--GTTGTGGAGATAAGGTCCTCATATGAAACACCTCTCAGGGAGCTGACAAGGAATGGACATTTAACGAGTGCTTTAGGT

a score=32582
s chr3           107121857 2646 + 160039680 CCCAAACCTCTATGTCTAGATGAGACAGCTgggtgaaagtggagatccagtggcataaagaacaactcaatgatatgagcaagtatgtcag----cttagatggggaccattcagaaggtgataagaaatacttagattctggacatttacagaaggtgaagttaactggtctt-ttgctagac---cagttcagtgtaagtgaatcaaa-gacatccaggtggactcaggggtttgatcctgaaaacctggcatattggaACCATATTTTCTAGTGAT----AAATTCATTG----ACAAAACCAAGGACGGCTTTAATTTCCCAAGACACACTTCTAAG--TTCTTA-ACACCTATATTTCAACAGTCTTGGGTGTGGACAACTGAGCTTTA------------------GGGGACTTCCCTCAAATACAGACAGAATCAAGATTACCCCTTGCATGAGATCCTACCACGACCTT---TTGCTCTACCATAATTCCTTTGCCTGCTCAGAGGTCAGGCTGGTCCATCTTGGAAGCCAAGAGTGAAAGCCCAAATGGGGATAGAGCCCAGATGGTCAGCCAGGCATAGTCCTGATTTAATTATAAGATCAATCTGACCAGCTTCCCTGCCAGCAGGAGTGTCCCTGGGCCTCAACTTGGCCAGCCCTTGGGGTGCAGTTCCTGGACTTGTCAGAGGGAGTTAGGCTCACACATTGCTCCCTGGGCCCCATCCAGCAGGCTTGACTGGTCTTGTCACTGGCCACTCAAAGCCTGACAAGGTTCCATTCTAACTGAAAACTGACCTGGGACAGtgcattcatttcttttcttgttactatgacaaaatgcctgatgaaaagaagagtttcttttggctcatggattgagagcacagtcaatcatagtagggtggttagggtggcagaagcctaagacagctgctccctttggattccaggtcaggaagcaaagacagtcaaatacgggtgctcaactccctttctccattccccctccccaacccagcaggatcctaacccttgcgatggtgccacccacctccagggtgggtctttcctcttcaactaaacctctctacaaacatcctgacagacacacctagagatgtgtttctgtggtgattctaaatctagttatattaacaacgaaTGACATGTCATGTAACATATGGCCTGAGTTGACTGAAACTAGAATGTCTA--AGGTTCCTGGGAAAGGAAAAGGACCATGAGTCGTGGACCTGACTTATCTGGAACTGACTGAGATGCAGGGTTAGGGGGAGGAACTCCAAGCACTCAACAAGATACCTATTATTAGACCAGGGAAACAGGGCA-GAGAGTCCAGAGAAGGCCATACTCCTGGGTACCTTGGACTCCTAGAAGGATTAAGCATAATCAAAGTGTGTTGAAGGACCTAGCTAGAAAGGAAGCTGCAGACTGTAGAAGCCCAGATCAGGATCAG-GTAAGAAGAGGAAGACAGAAGATTCCAGTCTGTATAATAGGACACCTCTCTGGAGTTCCCCCCACTCCGAGCT-CCCATCACTGTTCCCAAGGTGAGTGAGCATATTGAAACATTGCATCTTTTTCCAACTCCAAAACAG--------ATGGCCCTTAGATCCTCTTCTAGGATAAGTACCATGCCTTTCTTTTCTAGCCACAGTTCCTTTACCAGGCTCATGGCCACCTTCCTCTGGTACT---CCCTAAAGACAACTCATATCTCTTGTTTCTATCCAGTTGTAAAACTATTCTTGTGCCTTAGGTGAGCTAGCAGGGATATGAAAAAATGGAACATCATGTGGAGGAAGAGTCCTTTAAAATTACCCGACTCATATGTACAAGAGGCCTGAGGCCAGCAGC-----------------ACAGATTGAAGTGGATAATGAGGGTAAGGATGCAGAATGCTGGGCCCCTGGTTCAGAGCTACCGCTACTTCCCATCATTTATACACAACCCCCC----CCCCCAGCCCCATTCCCAGAACCTTTTTCCTGGTCTCAGCGTTTGCTTTT-CCAGTAGGAGAACCTGACCAGCACTTCTCCCC-ATCTTCCTCGATCTCTCCTTCTGCTTTCTGCACTaggtttctgcacatgtgataaaacatct-agaaaaccaaccttcttggaggagtggggagcttgggctcatggtttca---------gtataagatcactttgc-------------acttggagcagcatagtacatcatgacagaaatgtgccgctgaggaaattgctcaactcagagcagcaagaaagcaaagagggagggaa-------aagatcttgatttgatcttcaggagcactctcttcaatgatatacttcccctccaataggccccactttctaaaagtttcttctgaaagagccataggctcaggatcccaactttcatatttgagccAAATCCTATGAC--AACATGTAGCATCCCCCTTAACTTGCCGGATGATAGAATAAGTTAGATG-TGTCAAC-------------CCCTCCCAGACAAGCACTTGTAATGCTTCTTACTCCTGGAGGCCC------------TATAATGTACTCTGCTCTTTCAAACA--CACTCAGTATATGCCCAATTCAT-------ACAGTGGGTATT--------------CCATCCTCTTAAATAGCGAGAGAAAATGAGCTTCAAACAAGGCTTTGCCCACCTATAAAATGGTGTGTGGAACTGTGGATTTAGG-TGTGTCAGCTCTTTTCTCCCTAACAATCtgtacttgc
s HiC_scaffold_1 117683785 2364 - 233722169 CCCCAGCTACTAGGTGCAGAATAGACTTTGGGTTAAGGATGGAAACAAGGATGAGTGAAGC-TGTTGCAATAATGTAGGCAACAGAGCCCAGTGTCCTGGATGGGGGTGAGAAAGAGGTTGGTGAGAAGTAGATGTATTTTGGCTACATGTCAAAGGTGTAGTCAACTGAACTTGCTGTTAGGCTGACTGTGCagcttaaacaaaacaaaaggtgcTCAAGATAACTACAGGATTTTGGCCTCACCACCTGGTAAATGG---CCATCCTTCCTTGTGATGAAGAAATTCATGGTAGCATACAACCAAAAG----TTCACTTACTCAAGATATTCATGTAAGGATTTTTATACTCTAGCCTCTCTGTCATCCTAACTGTAGACAACAGAGCACTGctaagcgggggggggggggggggcatttcTTAGCCACAGACTGAATGAAGATAGCCCATTTCATGACATCCCACACTCTCCTAACACCACCCAACCACAAAGC-TCTGCCTTCCTGGAGGTAACCCTAGCCCATCCTGGGAACAAAGGGCCAGAGCCAAAGTAGGGTTAGAAGCCAGACAATCAGCCAGGTCTGGCCCTGATTTAATTATAGGATCAATCTGACCAGCTTCCCTGCCAACAGGAGTATCCCTGGGCCTCAACTTGGCCAGTCCCTAGGTTGTAGTTCCTGTGCTTGTCAGAGTGAGTTAGGCTCATATGCTGTACCCTGGGTCCTATCCAGAAGGCCTAGCAGGACTTGCCAATGACCACTTCAAGCCTAAGAAGGTTCCAGTCC-----ACAGCTGATCTAAGTCATTGAACT-----------TGGGTGCTA-------------------------AATCTTTCTTGGAT------TTGA--------------------------------------AAATCTAAGGC----------------TCCTAGGAAAGGAG--AAGGACTGT-AAATAGTGGAGCT------------------------------------------------------------------------------GGTATCTC------------------------AGATGCTAATA-----------AGGTGCAAGTTTATGGTG--------------------------GAATAACAT---------TAAGTGCTCTAA--------AAACTCAAGTATATACCCATTTCCAGACCAGGGAAACAGAGCA--------------------------------CACAATGCAGGG---AAGGATGCATTTCTGAGTACTCAGGCTCAC-CCTATCAT--GGCTGGAATGATATGACATGACATTTC------------ACACTTGG---CTCAGGGTTCTAGGAAAGGTTGAGCA---------TGCATTGAA----------------GAAGCTCAACATTTTC----TCCA----AGAATTAATGTGGGAAGAGGAAAGCTGATGACTTCAGTCTTCATGATGAAGCATCTGCCTTGGGTTTTCCC----CTGAGATCCCCCTCACTGTTCTCCA----AACAAGCTTACTGAAATATGGCATATTTCCACAGCTCTGAAATAGGGATGCACACAGACCATAGCCTCCTCCCCAGGA-ATGTAAGA--------TTTTCTAGCCACAACCTCCCCACCAGGTCCATAGCCAACTCCCCACAAGACTCTCCTCCCAAAACAATTTATATTGCTTGTTTCTGTTCAGTTGTATAACTACTCTT--------GGTGAGCTGCCTCAGCTATTAAGGAACAGTACATCAAG----AGCAGAGCttttctatctca------ttatataGGTGAGAAGCCTGAGGCCAAAATTGGAAAGAGACTTTTCTAAGAGCCTAGAGTAGGTGATGAAGGCATGATCCCAGGATCCTGGACTCCCAGTTCAGTGTTACTGGTATTGTCCAT-ATTTATCAACAGAGTCACAGATTCTCCTGCTCCTT----GGAGCTGCTTCTCCAGTTCCAAAATCAGTTCTGACCAGTAGCAGCCCCCTGCCAATGATTCCCTCCAATCTAGCTTGatgttctcttct-ctttctccatca-----------ctgtaacaaaatacctgaggaaatAAACTTCAAGGAAGGAacggtttattttggctcatgatttcagaaatGTCTGTCCACAGTTGCTTAGCCCAGTTGCTTCTGGCCTGTGATGCTATAGCACATCACAGTGAAATCACAAAGCAGAGGAAACTCCTCATGTTATGGTGACTGGAAAACCAAGAAAAGGAGGATGGGGTCAGAGACTACAGTACACCTTCAAAGGTACAC-CCTCAATGGCCCAACTCCCTTCCACTAGGCCCCACCTTCTAAAAGTTTC-------ACTGCC------------TCCCAACAGTC---------CCAAACCTAGTGACCAACTCTTTAGTTTTTCCACTCACAT---GGTTAACAGAGAGAGCTAGGCATTGTGAACGAGTACTACTCTGCTCTCTCAGAT-ATCAGTTGTAAT-CTTCTTGCTCCAGGATATTCTTCTGATGTAGTTAAAATGTGTCAGAATCTTTCAAATATGCATCCCATTTAACCAAAATCCATCCTAACAATAAAGGAAAGTACCTAGATTAGAGACCTTCTTCT--aacagatagggaaactgagatTCAAA-GTGTATTCATCCCACGAGAAAATGTTGCATCCAGCTTTGGAGCCCGACTGCATGACTTATGTTTTCTCTGATACATCATACTCAC

a score=6944
s chr3           107123018 187 + 160039680 CTGAAACTAGAATGTCTAAGGTTCCTGGGAAAGGAAAAGGACCATGAGTCGTGGACCTGACTTATCTGGAACTGACTGAGATGCAGGGTTAGGGGG----------AGGAACTCCAAGCACTCAACAAGATACCTATTATTAGACCAGGGAAACAGGGCAGAGAGTCCAGAGAAGGCCATACTCCTGGGTACCTTGG
s HiC_scaffold_1 117684605 196 - 233722169 CTTGGATTTGAAAATCTAAGGCTCCTAGGAAAGGAGAAGGACTGTAAATAGTGGAGCTGGTATCTCAGATGCTAA-TAAGGTGCAAGTTTATGGTGGAATAACATTAAGTGCTCTAAAAACTCAAGTATATACCCATTTCCAGACCAGGGAAACAGAGCACACAATGCAGGGAAGGATGCATTTCTGAGTACTCAGG

a score=119539
s chr3           107127512 4241 + 160039680 [encoded data, 4720 characters]
s HiC_scaffold_1 117687779 4453 - 233722169 [encoded data, 4720 characters]

a score=60477
s chr3           107138697 2356 + 160039680 CAGCTTTCCTGGAGATTTACATGACTTCCATAAGGAGAAGTCATTGGCCAAAGTCATGGGTCATTGACCAAGGTCATGAGGGAGTCCTAGGGAACCTGGGGCTTTCCATGCTGAGGAAATTTTGTGCTACAGAGGTTCAGAGTTGTGTTTGTTATGTGGCCAGGAC------------CGAGTATGTATTATAGAAGGTGTGGA-------GAAGGGCATTCCATTGGCTG-----AATCTTACTATGTACAATCCCCACTTTCTCTCACCTGCCATGGTGTGTGTGAGCTTTTTAAACTCTAAGAACCTAGGAACTAAATGGAACCAGTGAAACT-CTACCACACAGCCAACAAGG------------------------------TTCTTAAGTGATAAACCTGGAT-----GTATG-----GTGTCAGACAGATactcagcagagccttgcacaatgtcctgtggacaacttcaagaagcctccaggaaacgggctgcat-----ggtgtgc----------atgttggtcctgtcctgatcagcattttcgatggccatttggatgaggaaatagatggtgtgctgatcaaacctgagatggcatgaagccacaagagatgtgagtgtccatcttcttaaagtcct-taggctgaaacaatgtgctgaagaataacaagatCAGCTGAATATATGGAAAATGGGAAATGCCTAGCTTGGGAACATTTCCCCAG------ACTCCAGAGCTTTAGTTGACTCATACCCTTATAACCTACTC---AGAT----CCAAAAAGCCA--TTACTTGCAGATCC----ACACAGTGTCCTCACTTGAGCTTTCCAAAATATGCA--TTCTTCTGCCTTCATTGCCCTTCA---TCTTCATCAAGGTGTATACTCCTCAGTATACAAGTACCAGTCAGCAACTTCAAGAAGCCTTCTATCCACCTCTACTATGCTTCTACAGTGTTTATAGTTATTATCCTAAAGCTG---------TTACAG-------TTGTTTGTCT----AATTG--CTATAAGTTCTTTTGCCATCT--CTTCCTATCACTGAATACAACCCCTAGTACACAATACCTAGTGAATAAGTACCTGATAAATGAATGGCT---AGAAAGGATGAGGTGCAGTGGGAGATGCAAGCAAGGTCTAGAGACACATGGCCCACATTTTGTTTCCACGCCCTTCCAACATCACAGTCTCCCAGTATT-AGTGACCTTATGACTAAT-CCAAGCTCGGAGATAGAACCTCAGCATTGATGGTGCTTTTGAGGTTTCTGAGCAGAGCCAAAAGTCGTGAGCTTGATGTTTTCACAAATGA--TGAGCAAATAGGGTTGGCTGCTCCAGTCAAGGTTGCCTTCATGGGATTCCAGAATTAtcacataggttcc------------------tacttgccttaaaagtctgccattggtatctgaaattgtccaa------ttttgaacaagtttcttggaattttcattttgcactgagccctat-aaTAAAGTAGTGAATTTTACTTA-----------------------------TTTACTATAATCATTGAATGACTGACTATGAGCCTTTGATGAATATTGAAATC---ATCATTTGCATCTCATCATTGTCAATTCATTGCACAAATACAAGCTTATGTTTTATGCAATTGACATCAT-AAATGCATAAGACCTAGCCCCtttccacttattattttgtacatacacacttgtctataccttcacagggtttccatatctgtcatttttaatagcaatatcatatcctaaaatttaaatacactatgagcattaagccaaactccaatatcttggcatttgggttgcttccagtttttataaatagcatttgtaagggcagctaagtacaaattcttttct--------tttgagcttttaccctttgagtatattctcagaagtgaaattatcaggtcaagggttagaaataatttcatagtgcttaaatattacaagattattctcttgaaaaactggatcaatttatggagtactcaacaatatgcacatgtaactgcttctaaagtaatgaaataattatttt--actagtttaataggcgcataatgatTTTTAAAATTGAAAATAGCTTAAATGTTCAGTGGTAAGAAAGCAGAGTTTTCATAGCATGATAAATCTTTAGATTTTTTTTTAATACGGTCAGTAGAA-TCAAGTCTTAAAGCACCCACATACCCTGGCCTAACTCATGGTCAGTCCTTCTTTTCTGGAATCAACTAATTT--GTTCATTTAGTGGCCTTAAGCATGGGACTCCCAATGGGTGGAATGTCTGTGCCCC-ATGTCTGCACTACAGCAGCAGACAAGACAAGGTGAACTCCTTGTCAATGGACATGTCCAAGACAATGGCACCATATCTCCAACTCTGTTCCTCTCTGTGACATCCCCTCACCCCCACCTTTTCCTGTGAGTGAGGGGTAATAATATCAGTCAGCCTCACAGTGTTGAGAGGAGAGGACATAGA
s HiC_scaffold_1 117694589 2412 - 233722169 CAGCTTCCTTGAACATT-ACCTGAGTTCCATATGGAA---------------------GGCTAGTGCTCCAAGACATGAGTGAGTCCTGGGGGACTCAGGGCTTCCCATACTAGAGGAGTCTGATAGTCTGG--GTTTGAGGCAGAGACCAGCATATGGCCAGGCCATATGGCCACTCCCACTAGGTA--GTGGAAggtgagggagagaaggaagagtattttattatctatttttaaacttGCCATGGACAATCTCTACTTCCTGTACTCAGTTACAATGTACATGAGTTTTTAGACAAATAAGGAAGTGGAATAAAAGTATAATCTCTGAAAATGATACCAGCCAGATAGcaaggggttttttgtttgtttgttttgttttgttttatttttgcgaTGAGCCAGAACAATCAGTATGTCCTGACATTAGGAAGGTATTCATCAGAGCCCCTCACAAAGTCTGGTGGCTGACTTAGCAAAGTCTCCGGGGA---GGCATCATCAGGAAGGGTGCTTTATCCCCAGTCATAGCCCTACCCTGATCAGCAGTTCC-CTGACTATTTGATTGAGGAAATGTACAATGCACTGAACAA-TCTCAGATGGCATTAAGC---AGAAGATGTCAGagtctatcttttaaaaatccaatagaCTAAGATGATG--CTGCAAAGCAACAAGTTATGCTAAataacttcagaaaaagaaatatctagcTTGGGAGCATTTCTTCAGGCAATGACTTCAGAGCTTCAGTTGACTTGTCTCCTTACAAATCAATTGTGAGATATTGCCAAAAAAACACCTTACTTGCAGATTTCCAAACACATTGTTCTCACTTGGGCATTCGAGAACATGCTGTTCCTTCTGCCTAGAt-acttttcactttctttatcAAGATACACCTTACTCAAGGCTCAAATGTTAGTCAACAATCCCAGAAGACC----------CTCTACTACCCTTCCATGCTACCTA-AATCATTATTCTAAGCCTAGCTAACTTTTAACAAAGTATTCTTGCTTGTATTTGCAGTTAAACTCTAACATTCTTTGCCCTTTGTATTCCCACCACAGAATACAGCAGCT-GTTCATAATGACGAGTAAATAAATgcttgaaaaatgaataaatggaagaatgaatgagTAATAATGGAG-----CAGTAAGACCTTACAACAAAACACCCAAGTTCTGTGACC-CATTCTCCCTAGACCACAATCTCCTGGTATTCACCAGCCTCAGTACTAATTCCAAACTTGGAGAATGATTCTTGGGATTATTGGTGCTTCTGAACTTTCTAAGCAGAGCTGAAGCTCATAAGCATAGTTTTCTCGCAGGTAAAGTGAATCAACTGGTTTGACAG-TGTAGCCAGGGACAGCTTTATGGGTATATAGAGCAAATGCACAGGGCTCCATCCTGAGAGGAGCCTACACTCGACTTAAAACTCTGCCATTGCTGTCTTGagagtcttaatttttttttttagtaaagtCCTT-GCATTTTGATTTTGCACTAGGCCCTGGAAATTATGTAGCTGATTCTACTTACATGTAAATACAaaagaagtcattttctttttactttaatc-tTAAAC-------------CATTTGATGAATATTAAAATCTAGCCAACTTGAATCTCATCTTTGTCAGTTTATTGAACAAACACAATTCTATATGTTGCATAGTTGAAATCAGAAAATACATACTACTTAGCTCTTTTCCACTTATCGTTTTACATGTACATACTTGTTCATGCTTGCATA--GTttacatatttgttatttttagtagTTATATCATATTCTGGAATGTAAATACATTATGAGTTTTAAGCCAAATTCCAATGTCTGAGCATTTGGATTGCTTCCAGTTTTTATAAATAGCATTTCTAAAAGCAAGTAAATacaaattactttcttttttctcttttggtctaTGTCCTTGGAGTACATTCTC-------------CAAGGTCAAAATGCAGCAATAATTTTATAGCCCTTAAATATTACTGGATTGTTCTCTTGAAAAACTGGA-CAATTTATGAAGCCCATGGCACTATATACATTTAACTACttctaaaaatctgaaataattatttttaactagTACAA------------------------TGAAAACGGTTTAACT-TTAACAGACAAGgaat--aagtttttaaaacatgGTAAAACTGT-GTCCTTTTCATAAT-TGGTCAGTAAAAGTCAGTTCTTGAAG--ACAATAAAATCTGACCTGGCTCATGGTCAGTTCTCTGTCCCCAGTCTCAGTTACTTTGGGCTCCACCAGTGATCTGAAGTATGGATCTCCCTGAGAGCTGAAGGTCTTTGCCCCTAGATCTGCACTACAGAGGCAGACAGGACAGG-------------CAAGG-----GTCC-------TGGCATTCCCTCTCCAA-GCTGCATATCTCTTTGG--------CCCTCTGGTTTTTACCTGAAAGCCAAGAAAAATAACCTCAAATTGCCTCCCAGGGTTGAGAGAGGATACTATAAA

a score=62904
s chr3           107141420 2543 + 160039680 AAACATCAAGTAGCAAGCAGGCTCTCTGAAAGCCAC----CAGGGTAGTTGC------------------ATGATTGACTGTACAA--TCACTGTTCAACATTGATTTTCCTGGTGTAATTTCAATCTTCCTCAGAAGGTCCA--CAATTGTGATCCCAACCTGTGGTCCATTAGGAGAGAAAGGCCGATTTGATGGCCACTCCCATCTCC-CTATACTTaatagtgatatg------tatttatccagcaaaaagttgataaagcac--------------------------------aagaagaattaaccatttaatcaccctggtcatgtggtaaggaaggaaatatttctataatatagataaggaaatagaacttgcagaagtgg-----cttgtt-------cacctagatgtctagaggcctaaccaagattcaagcccaggctgtgtattctagctcagagtctacacacaagcccatcatactatgctatCTCCAGATGAGTAGAGgaactttagaactaaaacagaccctagatatcgcatactccaaacccttc-tctttgagataagttagctaagagctcaatagagaaggca----tcccaacct----------aaagtgtgcagtgattgagacagatgaaacccagtcccctaactcc--gagtacagctcCATATGACATCTCACTATGACACTACCAATGCCTTTGGGTATATGACAGGGCTAAGAAATTTTGTCCTGCAA-TTTCTATGGGATGACCCTCAAGGCTTCCAGTCCTGAAGACCCAAGTACAAGAACTGAGCAGTCTCCATGCTGATGGAAAATCAGACTAGACAGGTCAGCAGAAGACAAACCAAGCTGAGACAAGTGCTTTCTGGAGAAACACCAAAACCATATTTTGCTCTGAC-AATGAAGCAATTTCGTTGAGGTTATTTCTGTCCAGGGGAGTCAAGGTCTGGGCA-GAGCGAAAACTAAATCATAATTGTTTCAAATAACCTAATGCAGAGTGACAGAGGAGGAAGGATTCTCCAAGACCCCACTTCATTGACCCAGGAGGGGCTCTTTTTATCAGGATCAGTGCCAGGCTAAGTCCTTCTGTGCCCCTTCCCCCAGTTACAC-TCACTCCTCAGTTCTACTCATCTATCAATCCCAGCTTCCCTACAGCCAACCCTTTCATCAGAAGCCCACCCTACTCCCTGGAGAGCAGCTGTATTGC---------CTCCTCCCCCTCTACTGTTGTGTACCTTCTCTGAGTTCCTGTAGTTATAAATAAATGATGTCTAGATTGATTAGAGGATTGGCTTTCCCTCTAGCAACAATTCTGACCTCCCATTTCTGAAATCTTGCTGCCCACTAGCGCCACTCAAGTTCCACTTGGCCCTGGGATATTAGTGGAAAGAATCCTCACCTGGGAATGCaagatcactaaaacccggagtcagaaaatgtggtttgagtcttggatttgccaaag--gctctgcatccttgactaaggtagtcaattctctaagccttggtttactccaggacatgtgagctgctggccactatctt-tttatagaatgttgggag-----------------atgtaaataagatgaACTTTAATACCCAGTGCTGACCTTAGGGCTGTTCAATGCTGCAAGAGGCACCACAGTGCC-CTGAGAATATCCTGGTAACTTTGCTGGCTTGTGCTTTTCACTTCCAGGTTAGGGGGCAGTCACACTTGTTTCTCTTCCTCATCTCCTAATGTTGTTTGGGTCGAGAGAAAAAAATGTCATATGCATAAGGATAATGTTAAAGAGTATAATCTCTCT--------ATATTTTACATT--TTTAAAATGATGCTTATGGAGAAACCT-------AATTTATGAA---------------------------GAAAAAACTCAGGGAAGCAATCAAAGGAAAAACAGTTCTAATAGC-AGATGCTTGGACtatatatatatatatatatatatatatatatatatatacacatGAACTCTTTTTTTCTTTCTATAATGACAATGTATGATAATTAACATGCTGAGGAAGAAAATACAATGTGTTTTATTAAGTTTTTTAAGTTGTTGAGAATTATTGTTCTCAAGTTACTCAGATGAGGACATATCATGACAGCCAAATGAATTTTG-TAAA--GGCTGTTTGCTGCATGAGGGAGT----AGGGAC---------AGTAG--------ACCATTAAAAAAAGCCAGTCCAAAAATACAGAGGCATCTGGGTGTGACCCACATATAGAGTGGTGTCTATTTGTGGTGTTGTGGGACAGCAAAGCTAG-AGGGGGCTCAGAAACTC----TCACTCATCTCCATTCCGCCCCGACCCCCCCCCAGCCATGTTTTTGGACAAAATATCTGAAATCAAAATAGAAAAAAAAAAGACTTATCTGAGATGCCAGGTGTTTTAGCACCTGCTAACATAACAGCCCTTCTGTGTCCTCTCTGGGACCTGGGGTCTGTTTGACCCAACCACCACCACCCTCACCACCAAAGTTGATGCTTTCCTGCTCATTGACTCGTATCCAACCGAAT-TCCCAGTTCTCCATTCATTACATCCACGGAGGAAATCAGAGTCACTAATA---------GCA---------------TGTAAATCTGCCATACTCCTGACCAGAAAATCAGGCCAAAGTAGATACAGTGACTGAGTAATGAAACCCATAGAACT
s HiC_scaffold_1 117697003 2528 - 233722169 AAATCTAATGCAAGAAGCAGGTTTTCTTAAAGCCTCTCTCCAAATTAATTGCTACATTGTTTTCTGGGAAACAGTTGGCTGAGCAGAGTCACTAATCAACACTAATTAGACTG-TGAAATCTCAGTCGTACTCAGAGATTAAAAGCAACTGTGAAGCCCTACTAAATGCCGTAAATTGTGTGCCTCCAATCTAGTACCCAGTCTTCCCTCCTCTAAATCTAACAGTAATACCAATACCTATTTATCCAGCACAT-GTTGAGAAAGAACTTGCTATGCATTGGGCACTCCCTCAACTATTTAAGCAAATTAACCCATTTAATCATCCTATCAGTGCTGTGAGGTAGAACATATCCCCACTGTACAGCTGAGGAAACAGAGGCCACAGAGATTGAAAAACTTGCTATTCAGTCACCCAGAAGGCTAAGCATGGAGTCAGGATTCAAGCC------------TGTAACCCACAG------------------------------------------------------GAGGCAAAATAAACCCAGGGCATCATCTACCCCTAATCCTTCATTTCTGAAATAAGGGAACTAAAAACTCATCACAGAAGATAATTCTCCCTTCCTGTGAAAGGACATAGCATGCAGTGGTTGAGCCAGATAGAAACCAGGCCTCTCACTCCTGAAGTAGATCCCTATATCATGTCTCACAATGGCCCATCCTCTGCCCTTAGGTCCATGAGAAGACCGACTAATT-----CTACAGGTTTCTATGG-ATGACCCTTACGACCTCCAGTC---AGGACCCAAGCA-GAGAACTGAACAATGTTGATGCTGATGCAAAATCAGACTGGACAGGCCTGAAAAATTCAAAC-----TGAGACTAGTGCTTTCTGGAGAAACACCAAACTCATTATCAGCTCTGGCCAATAGAGCAGTTTCTTTCAGATTATTTCTGTCCAGAGGAGCCTAGAGCTGGACAAGAGAGACAGCTAAATCATATTTCCCTTAAAGGATCAAAAGCAGAGGGACAGAGGAGGGAGGATTCTCCAAGGCCC-GTTTCATCAACCCAGGAGAGGACCTTTCCACCAGGACTGGTGCCAGATTGGGTGCTCCTGTTCTGCTCCCACAAGGGTCACATTGCCCCTC--------------------CCCAGCCTTCCCAGGGCTAGTTTTCCTGCCTGAGGACC--CCTTCTC-----AGAGGAGTTATGTtgcttcttctccctcctccaccTCTGCTGATATGTACCTTCTTTGAGCTTCTGTGGTTATAAATAAATGATGTCTGGATTGATTAGAGGATTGGCTTTTCCTCTAGCAACAACATTGACctcttgtttctgaaatcttgCTGCCCAGTAGCATCACTCAAATTTCACTTTGCTTTGGGACATTAGTGGAAAGAGTTCTCACCTGGGGATGCAAGATCACT-AAACCTGGAGTCAAGAAATGAGGCTGGAGTCTTGGTTCTGCCTTGGCCTCTCTGTGTCCTTGATAAAGTCAATCAGCACTATGAGCTTCACTTTACTCCATGAAACAGGA--TAGTAATTGCTACCTTCCTTATACAACTTTGGAAGTAATGCATGACATAACTGTGAAAAAACAGTTAACTGTAATTCCC--TGCAGA----AAAGCTGTGCAATGCAGC--TGATCAGCTCAGTGCCTCAAAGAAAGTCCTGTTGA--TTGCTCTGTTTCAATTTCTACTTCCACATTAGAGAG-AGTCACTCTTGTTCTCTCCCAATGTCCCCTAATATTGTTTTGG------GTACAAAATAACATACACACAAAGAtacttttaaacaataaaatgtcCTTCCCCTATAATAGTACACAGTGATTTTAAATGATCCTTGTGGAGAGTTTTAAGTGAAAATTTCAGAATacaaagtcatatatatatatatatatggaaaagcACACAGAAGAGACTAAAAGAAAA--------GATGGCAAAATGGTAATAGTATGTATCT-TAGATGATTAGGATTCTTAATAAGTTT---TATGAAC----TTTCATTTTCTACAGTAATCATGTATTATAACTAACA---GAAAggagcaaataaa------------aattttttaaagttgtttaaaGTC-TTATTCTCCATTTGCTCAGATAA--ACACACTATGACATCCACATCAATGTTGATAAAGGGGATGTGCACAGCAGAGGGGGATCACAAGGGACCCAGCAAAGAGAAGGGGTGCTTACCA-GACAAACAGCCAGCTTGGAGCAACAGAAACACATATGTGAGATTCACACGCC-------------------CCTTACAAGACAGTAAGGCTAGAAGAGAGCTCAGAAATTCCTTTCCACTCACATCCTTTC-------ATTCCCAC---------TTTCCAGATTAAAATTCTGAGGCAAAGGT---AAGGAAAGTGACTTGTCTGAAACCCTAGGTCTCTCATCTCCTGC-----GTTCAGCCCT--TGTGTCCTTTCTGGGTACTGTGATCTGTTTG-------CACCGC--------------AGACTGG--------TGCTCATTTTCTGATACTCACCCGTACGTCTCAGTTCTCTGGCCAGTCTATCCTC--AGGGAATGAGAATCACCAACAAGGATTTGGGCATAATAAAAATCAGGCTGTAAATCTGTTATATTCTTGTTCAAAAGATAAAGCCAATTCAGGTACAGTAgctgaataataaaaattttataatt

a score=66395
s chr3           107149486 2300 + 160039680 CCCTGCAGCCCTTCAGTCAGAAAGACCGGTTTAATTTCCATGCAAGAAAGCCCAACG-GATGACATTTCAAAAGAAGAAGTTTTACAAAGTAAACTGGGGCCATTTTTACAAGAA--------------------------------------AGATGAGACATTCTCCCACACAGAATCCTAAAGGACATCAGACTCAGGAAATTAGACATTGACCAGAACATGTGAATATA---------------------CACGGCCTTTCATCAGGGACATTCGTTTCTCTCAGGCTAC--CCCAGTCCCAGGGTAGACAGCTTAGGTTGTCTACATTTTACCAGTGAGAATTCCAATCTCTAAAGTGTTCTTTTGACCACAGAT-----TCACTCAGTTCCTCGAAAACAAGCCAAAGGGTTAGGGATCAGTAGAAA-------------------------------------------------------------------------------AAAAAAAGAAGAAATGTG-CCCCCACCTTTGTTATGTCCAATCATGAAGAAATTTGGGGCTCATAAGATACATGCCAG--AGAAGCCAGTAACAGGGAAGAGAGATTTCTGAATGAAAGTAGG--TGACGCTGCGAC-TCAGACATGAATTTCAC-TGGACACTGTGGAGAGCAGGGTTGCAGATCAGTAAGCAA-GGATGTCATTAAGGCATAGAGCATGGA-----------GGGGGTTCACAGAGGC--TACTCAAAAACAGCAGGCCAGGCTGCAGCTAGGGTGTGT-CCACT--GAGCCTCATGAGTCCTTATAATCTTAGACCACTGTGCCACATTTATGAAACTTCTTTCTCA-CCGTGAAGAAATCTCTCTTGTTGATTATACTCAACAAGAGAGGCCAGACAGGCAAATGGAGCACAAACTAAAAGAGCACCACCCAGGTTTATTCAGACTTACAGCCTACAGTGCCCCAAGTCCCTGAGAAACA----------------------CCTTCAAAGAGACCAGCTGTCTCCTTTGCCCTTGATCTTAG----GAAGCATAGCCCTATATCACTGTACATTAACTGTATCCTTATGCTCTGGGGGCCAATTCTGCCCTCTGTGTGGCCTCTAAAAACTCCAAATTCCGTGGTGT-AGTCCTCGTTTTTAGGCCCACTTACAGATATATTCCTGTACTCCTCTATCTTT-CAGCCTGCTACTTTTGAGCTGATCCTAATGGCCACTTCTTGCAACCTCAATCCGTTTATCAAGTAGTCTGATCTAATTTCTGCACTCTTTATCCCTGCCTCTGGGACTGCTCCCAGAATCCACACAACTAGCTGCCCTCCCCACATCCTGGCTCCCCACTCTGGTATTGGCTGGGCCTGTCACATAATTCTCAC-----ACTCTCATTAGCCTGGGCCTCAGCAGGG-------CTACTCAGCTACATCAATGAAGTTACTCATCACTAATTGCCTTCACTACCAAACAAATTTCTGGTACCCTCTGTTTTAGGGTAAACTCTCCTCTCCTGCCATTTCAACTCAAACCACTACCCAGACCGTTTTTATGTTAGATACTAAAG--GGGAGG--GTCGTTCTCCAATGACAGACAGA-CTTTGGGGTC-------------AGGATAGAGA-----CTTACAGCTTATAGTTTGGTTC---CCCCCTTCTTCTGCATCCACAAAACGCATGCCTGCCACTCAACCCTAGCCATTTAGATGAGGGCATTGTGTCAAAACGCAATGAA----AGAGCATCCATGTCAGCTTTCCCTCCCCCAAATGTGGGTGCCGCAGATGCAGAGCTTGGCTGCCTGCCCAGGATGCTCCCCATCCTCTTCAGCCCATTC--ACCCACCCACCAGGAGCCTCCAGGAAAC-AGTACCTAACAAACTGACAGCGGCCACAGGCCACCCCACATCCCCCTCCCCAGGCCAGAAAATCCCATTCAAGGCAGACAATGCTTCTTAACAAACAATTAGCTTGAATTTTTCATTAGCTTCTACTTCCTTTGCAGTTCCTGCCTCCAGCCCTTTCATAGCTCTAAGCTATGTATAGCTGGGGAGACCCTGGCCAGTCATAGAGGAGAGCCCAGCGGATATGTGGGTTAAAGCATCCATGAACCCACCTCTGAAATAGACTCCTAATGAAGCTGATTATAAATTAAACCCACTACT-CCATATAGCCAACATGTGGCCTACTTCAGACAGGCATTTCCGAGCACACCAGCAAAACCTGCCCCTGTTGCAGGCAGCTTTGCTGTTGCCTGCTACTAAGGATCATGACAGTGATGGAGAAGATGCTAAACATGATGAAAACCAGACAATGGccttataccagtgtacagcattccttgcaatgcactttcacatgca-accctcatcctggcctccaaacatccctgagaggtccctgtggtc-------attaacatccacctgaggattatagaaggctatttgagcttcaggtgtgaagtgacttcattcaggggacacaaaa
s HiC_scaffold_1 117711282 2448 - 233722169 CCCTGGAATTCTCCAGTCAGCCA--CTGATC------CTGAATAAGAAAGTTCAGGATGCTGGTATTTCAACAAAAGAAATAGTATAGAGTGAACTCAGGCAACCTCAGAAAGAATCCAGAATTTCTATTGCTTTCAATGACTCATACTCAAGGGATGCAAATTTCTTTGTCACAAGAGATTA---GATTTCAGATTCAGAAAGTAATGCATTTACCAGAGTACATGAGCATATATTTACATGCAGACATTATGCAAGGCCTTTTATTTAGTGTGCCTATTTCTTTCAGACCACAGCATAGTTCCAAGGTGGGCTCTATTGCTTGTTCACATCTTACCAATGAGAAAACCAGGTTTTGAAAGGTGATATC-ACCAAAGATAGTTCTATATCAGGTATTTCAGGACAGGCCAAAGTGTTTGGGGTCCATAAAAACATACatatggccagggatttagctcagcagcataagcacctgcctggcaagcacaagattgtgagttagatccccaatagcagaaaaaaaaatgtggcctCCATGATTGTTGAGTCTCAacaagatgaaatttagga-gCATAGAGTATATTCTAGTAAGAAGCCAGTGTCAAG-CAGAAAGACTTTATAATGCAAACCAGCTTGACAGATTGGCATTAAGTCTGAATTTCACATTGTGTGTGTGGAGTTCAGAAGTGGAGATAAATAAGCCCTGGGGACCACTGAAATATGAAATACAGGTAATCTAGACTGGGGGTTCAGTGAAACCTTCCTCAAAATGATATGCTCAGATTTGGACCTGGGTCTGTGCTACTCCAAGCCTCATG---CCCTTT---------CCACTAGGCCAAACTC-CAAAACCCATTTCTCAGCAATAAAGAAATCTCAGGCAGAGGTTACACTCAG--AAAGTGTACAGACAGA-AAACTGATCATAATGAAAACCAGTTTCACACCCTTTGCCTCAAAATTATATTCTACAGTGGCCTAAGACACTGGGAAACAGCGTCTTCACTGAGAAATGGTGTCTTCAAGGAGCCCCATTTCCTGCTTTAACCTTGACCTTTATTTAGAAGCTCAGCCTTTCTTCCCTGTATCCCAATTGCATCCTCCTGCTCCAGGAGCTGATATTGCTTTCTATGTGGCCTCCAGAA-CACTAAATTCCATGGTGCCATTACTTCTTCCCAGGCCCACTTA--------------TGCTGCTCTATCTTTTCTGTTTGCAACTTTCCAGCCAATCCTAATGGTCACTTCTTGAAACCTCAATCCATTTATCAAGTAGTCTGATCTAATTTCTACGCTCTTCATTGCTGCCTCTGGGACTACTCCTAGAATCCACACAACTAGCAGCCCTCCCCACATCCTGGCCTCTCACTCTGATACTGGATGAGACTGT--CATAATTCTCACTCAGTGCACACATTAGCCCAG---TCAGCAGGGGTTACCCCAACACTGGTATCTATATGGGTTAACTCATCACTAGTTACGTTCACTACTAAACAAATGTCTGATTTCTTATGCCTTGGAGAAAGCCCACCTCTCCTCCCATGTCTGCTAAGCCCACCACTCATG------------TGGATATCAGAGCAGGGAGGAAGTAATTGCCCAATCATAGGCAAATCTTAAGAGTCTTCACTACTCTAAGGGATACAGAATAgccttctgtcttttttgttagTCTGCACACCCCTCAACT-CATACACAAAAC-CAGGCTTGCCACACAGACATAGCTGTT--GGAAAGGGACTTGTACCTTGACACAGTGGAAGCCAGAGCTTCTGTAGAAACTCTCCCTCCACCAGATGCAGATGCCAGGAACACAGAACTTGGCTGCTGGCCCAGGAAGCTCCCCATCCTCTCCAGACCCTGCCTGCCCACCCAGCTGGGGCCTCCAGGAAATAAACACCTGACAAACTATCAGTGGCCACAGTCT-TCCCACATCCCCCTCCCCAGCCTAGAAAACCCCATTCAAAGCAGACAGGGCTTTTTAACAAACAATTATCTTGAATTTTTCAttagctgctttttcttttgaagttcctTCCTTCATCCCTTTCACGTCTACAAGCTATGTATAGCTGGGGAGGCACCAGCAAGTCACAGAGGAGAGCCCTGCGGATGTTTGGGCTAAGGCTCTTGTGAACCCACCTCTACAACAAAC-CCCACTGAAACCAGCTATAAATTATGTGCATTACCACCACACAGCCCA-------------------------TTCTGCATACACCAGCAATGCCTG-TCCTGCAGCAAAAATCCTTACTCTTCACTGCTGATGAGGATGATCATGGTAAAGACAAAGATG------ATGATGAAACGAAAGTAAAGGCTTTACTCCAGTACAGTACATTGTTTGCAGTGCTCTTTGCCATGCAGACTCTCATTTTAACCTCCTAACATCCCTGTGAGGTCACTGTGATCCTTGGCTATTATTATCAGGCTCTGATTTACAGAA----AAAACAGGTTCAGAAGTGAAGTGATTGCATCCA-AGAACACATAA

a score=59757
s chr3           107151766 5487 + 160039680 [encoded data, 6130 characters]
s HiC_scaffold_1 117714019 5298 - 233722169 [encoded data, 6130 characters]

a score=40219
s chr3           107158435 3234 + 160039680 TTGAAGTCTGTAAGTTGTAT-GTGCCTCTGTCATCAGATACGTGAGCCCTGCCTCTACAATAAAGTGA--GAGCAGAGAATCTCCAAGGTCAAAGTCCTCCCTCATCAGTCTCCTTTGTGCCCT-CTGCTTGGCAACCATTTGATTGCCCACAAAAATGACCAGTGCAGAATTCATGGCAGTTCAATAACTCAGCAGGAACTGTACCCACCTACTTCTAGTCTTGTATTTCTGTCAAAGACCTACGGGCACCATCCCTCTAGACTTCCTGGGGAGCA-------CAGCTACCATTATCTCTATTTTAAAGGTATGTTTGTGGTTCAATTGCAGATACTTGTCTAGCATGTACAAGGGTCtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgCATTGTACCACTGTATAAGTGAAAATCCTACCATCAAAGAGGTGAAGAACCTTGCCCGAGGACaact-----------------------caagtctcctcagtcctagtccatcgctccttctgtcacactttgcAGAGAGGGGACAGCCATGCGTGGTGCGTGGGAACTAAGGAATCTGGTCTGCAGTTGAGCATCATCACGCTCCTGGCAGGCTATATGGCCCTCGCCCACCCAGGGGGCTGAATGAT-ACTGGCAGGCAGTTGCGGGGGCATTCCAACTGCCATTCTTTTCCCAGATGGCCATGTACAAAGAGCTCTTTCAATAGACATAGTCACCAGGGAGGGCCTAGGGAGCCACAGCTACAGGAAAGACCTGCAGAGTCCTCTAAAGACAATGCCAAAGACTAGGCCCATCTGCTGGAAACAGAGATGTAACCAAACACACAGCACTTCCTTGTACCACTCGGCAAAGTCTT--GTCCCTCGTGGCCTCACTTAAACCCTGGTGAGGGCA----------CCAAGGGCCCACAGACCC--------ATAAGCTACAATAAGGTAGGACATGAGGTAAAGAGAATGCTCCCTGAGGACCATTCTCTGGCAATAGATGGATGGTTTATTGGCTCTGGTTGGTGGAGAAGCCCTGTGAGAGCTCAAGGCGTCCTCTGC-TGCAGTGAGGTGCATTAGCGGCTCCAAGGCCAGCAGTGGCCATGACTGAAGGAGTCTCACTTTCTTTTGGTAGACTT----TGGGACTGGAAAGATGTTGGCATTGATATCAAGAGTACAAAACAAGAACagctctgaccctgtgtcaggttctgcccccaa-acttt-------------ctatttagagccttgtagcacccccatgaggcaggtaagatcactacatgctttgt-acagcagcagagaccac--------gatgcagaataacctatcaagatgcccagctaAATAGGAA---------TTCAAAGA--------CTTGCTGCC---TTCATGTTTAATATCCTTGCTGCAAGACCCTCCAAGAGTTTGGGGTATTCTTGCTCTAAAATGAAATCGCTAACCCACTTTCCTGGCCCCCACCACCCCCTGCATGCAGGCTTTGATGAT-GGCTTCAGGAGTGCTTCAGGCAGCAAAAGCTCTGGTTTGAAGGCTCTGGT-TGGGCTAGTCTCCGCGGCCCGATACAGACTGGGAAGGAAAAATGGCAGCAGATCCCAGGCAAATCTCTGCAGTTC-CCTCGAGGGAGGG----------GCGTAGTGGTCGGAACCCTGGGGCCAGGGCGCACAGCCAGGCTTA----TTGCACTCGGCACCAGCCACCCACTGCCACCCGATCTTTCTCAACAAGATAAAAACTGCAGCATGCTCTAAGCGCCCAGCTTC----GGACTGC---AGGGAGGAATCTGAGAGAGGGCGCGGGGGCGGCCACCGAACAGCTT----GCTCTGCAAGC--CGCATTTGTACCCGCCCAGTGACCTCTGCTGGCCAGGCTAGCCCTGTGCATATGGAAATGGCCTCCTGGGAGGCAACAGCTCTGCAGGGACTGGCTCTTCTACCACAGGGGAGTTCATGTCTTCAGAAGACAAG---AATCCCTTAAACTTTGTCCCCAGCTGGACCTGCCTGGT---TACCTTCAAAAAGTGGGAAGAACGCAGAGCCCCCATCGAGCTGCTAAGATA-------------------CACAGGCTGAGCCAAGAGAGGTGGAATTCTGTCTGTCCGTACTGC---------------CCAAGGTTCTG---TGTGCACCCATTT-GCAAAATGAAGCCTCAGACCAGGGTCAT-------------TTAAGAACTGAATG----------------------------------TAGTGAGGTGTTACGGT---------------------------------------------------------------------------TCAGATAG-----------------------------ACTCACAAGAATCATGGTTCCA-------CCCCATCCGCACAAAGA-----------------------------------------AAGACTCC-------------------------------------------------------GCGCACTGGATTGCTTCCTA---CTGGCCCTCTCT-----GAGACTAACCTACCCTCCGTGGGAACTGGGATAGATTAAGTCTCCCCTCTAGGTGTGGCTCTC----CTGTAATATAGAGCCTGCTAGTTTCCAAGATCCTATTCCATCTG------AATTGCCTGA-GGATCTCGTCTGACAGAGTCCTAACAAcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctccCAGGACTTCTATTCAGGTGTTCACTGGGAAATCT-GAAATGGGCATTTTT-TTAACCCTTACCCCAATTCACCTCATGACCGACAGAGTTTAAGAATGACTT---------------------------TGCTACTCCAAGACCCTCTAACTTTAGTTCTGTTGAAGAAAAGGCCTGAATTGATTGGCTGAGATTGGGGTGGGGGGGGTTCCAACCTGGAA-AATCTGCCTTCTCTGGGGACAGTTC--AGAATTTTCTCTGTCTCCACTTCTAGTTGGCAGGCACCCTCAGTGACCTTCAAAGAATCCACTCCCCTTGCCATCTTTATCAAGAGAACCTGCTTTTGTTGAGGGTGTCCCTTACTGAGAGAATATGGTG-TAATCCTAACTCATACAAGTT------------------------------ATTAACACATGAATCATACTGTGAGCTGGTTTTGGCCAAGAAAC--TGAAGAGAAACT---GAACAGGGTGCTGAAAAGGATTACTTTAAATGGTGCTCATATACTCATGACTGTatgtgatgtccggaacttcagcagccacctcttgcctgtgaggagacaatttgacacccaaatctctgagcaaagtaggaagcagggaaggacccatttcttttgttacattatggagctgttaaattagccaaccttggagataagtcttcttccagaggttgagttttgtgttacagtag--aaaatattttcA--AATACACTCCGCATCTCCAAAACCCTTGCACTGTGAGCTGCTGG--AGTTTCTGCAGGTAAGAAGCACCCATCCTTCCGTGAATCCACTCTA-TCCCAGGCTCTGCCGATGGTGTCCTCTGAGT--GCTTCACTCATC
s HiC_scaffold_1 117720501 3356 - 233722169 TTAAAGTCtatg-tttgtattatttctctgCCCTCAGGAATGcatgtttttcttctctaataAGATAGTTGGGGTGCAAATCCCCACAGTCAAGGTCCTCTTTCACTTGTGTTTCTCTCACCCTGCTGCTTGGCAGCACTTCG--------------------GTGGAGAATCTAGTGC-----------TCA-CAGGAACTCTAGAAACCTTCTTCTAGCCCTTTATTCCTATCAAAGACCAGCATGCATTGTCTTTCTATTACCTCTGGGGAGCAGCCAGGACAGCTATCATCAACTCCATTTTA---------------------------------------------------------------------------------------------------------------------------TACGTGAGAATCCTGAGATCAGAGAGGTGAAGTGCTCT-CCCAAGGACATCCAGCCAGTGGATGGCAGAGAGGAGCAGGCCTCCC---TCCTAG-CCATGACTCCTCCTGTCACATCCTGCAAGGGTGTTGCTGAGACTGATGATGCATGG-ATCTCAGGACTCCAGTCTGCAGT----CAGCAGCCTACTCCTGGTAAGCAAAGTGATTGGCAACCACCCAAAGGGCTGAGTAATTACTGGCAGGCATTTACGGGGGCACCCTCTCTGCCATTTTCTTCCCAGATGGCCATGTACAAAGAACCCTTTCAGTAGACATAGTCTCTAGGGAGG--CCTGGCAGCCACAGCCACAGAAATGATCTGCAGAGTCTTCTAAGGACACAACCAGAG-CTAGTCCCATCTGCAGAAAGCAGGAATGTGACCAAACACACAGAATATAATTGCCTCACTCAGCAAAGGCTTGGGTGCCTACTGACCTTGCCCAAGCCCCATTGGGGACACCCTGGGACGCCAAATGCTCACAGAATCCCAGGGAAATGAGCTTCACTGAGCCACAAAATGGGG-AGAGACAGTGCTTCAGTTCAGCCATTCTCTGACATGAGGCCTCAGAGTTGTCGAGTTTG--------------------------CAGGGCAGACTCTGCATGCCCAGGAGCCCATC-------------CCAGCCCTGAACTTGACTGAAGGAG-CTCACCTTGCCTTTGAGGACTTGCTCTGTAACTGGAGGAACATGAGGGCTACTAACAGTTACTCAGAA---------CTCTCACCCCTCTCCTGGCTCTGTCCCAAGCACTGTACGTGTGTAATAACTCATTAG-GCCTCAGTGCAGCCACATAAAGCATGTACCACCATCAC------TGTGATAAGAGAAGAAACCAAAAGGTTGGGAGGTGGGGTAACTTGCCAAGGTGTCCagcaagaaagggaagaagaggggTCAAACACAGACAATCTTGTGGCCAGTCTGCTGTTTAGCCTCC-TGCTGACTGGCCTCCTAGTGTTCTAAGGTAGGCCAGCCCT-GCATACAATCCCTGAACCACTCTCC---------CTGCCCTTCACAATCTGGTTTTGCCAATAGGATTTGGGAGAAGTGTGG--AACTGGCACACTGGTTGGTGGCCTCTGGTGCTGGCTGGGCT------CCTGCTGTGGACAAGG--------------------------------TCTACAACCAGCCTAGAGGGAGGAATCAGTCTGTGCAAAGCAGT------CTTAGGGCCAGCGGCATCAACCACTCTCACCCTTTCCACCCCACAGTGGCTGCCAAGTGACATCCAGTCTCTGGGTGTTTGATAAGAAATAGGACTTGCTC-AGGCATGTGGCCTTAGGAGGACTGCAGAAGAAAGACAGTTCAGCCAGGACA-AATGACAGCTGCCCAGCAGCCTCATAGCCCTGCTTGTGGCCCGTTTCTACCCACACAGTGACCTCTGCTGGCCTAGCTGGCGCTGTGCAGCTGAGAAGGCTCCTCC---------CAGCCATGCAGGAGCCAGGCAGCCTCCCAGAAGACATT---TGCACTCAGAGGACAGGAAAAATACCC--AGCAGCCTCTCCAGCCTGGTTCACCAGGCTCATACCTGC--AGGGCAGCAGGAAGGTAGAG--CCGAGGAAGAGACTAAGAGACTGGTTGACCAGACAGTGCCACATACTGTGGCAGGCTCTGTGGGCCTTGGTTAACCATTTCTGCAATGGGTGTGATCATCCAAAGTCCAAAATTGTGGACTGGTTTAACCACTTCACAGTTCAGCCCATCATCATTCAGGCAGCGTGGTTAAGCACTGACTACTTTAAGCATTACTTGGGCAAGTGTCACTTCAACCAGTGGATTCTTATAGTGaacaaatttgataaaattgtcactTTTCCTGctataaaattaatgaagactACACAATTTCTGGTCCTCCTATATTAAATAGCTGGACTGGTGAGTGGTTAAAGTGGTGACATTAATTAAGGTCATGGATCCAATACAGGCCACCTCCAAACACAGGTAGAAAGGATCACCCATGTTTGACTGCTCATCAAGACACCCAAGACTCCACTCTGCTGCTCCTTTATCTCCCTTCCCCTGTCCATCTGTGTGCCCAAAAGAGGTGTACACAGGAAGGCCATCCAAGGCAGACCTTCCCTATGCAGAGGTCAACCCACTTTCTGTGTGAA-GGAAGCAACTTAAGTCCCTTGTCTGCACTTTACTTTTAGCATTAGAAGGGATGGTTTGT--GCTTCCCAGATACCAGCCCATCTGCAGCTAAAACACCTGGTTGAGCTCTTAATTCAGGGTCCTAA-------------------------------------------------------------CTCCAAGGATTTCTCTTTAGATGACCACTGTGGAGCCTggaaatttgtattttgatttactCTT----CAATTTA----------AATTGGATTTAAGGCTGACTTAATCACTAGATCAATGTTCCCAAGATCTTCTATTCTAAGACTCAACAATTTTAGAcctccaaaagaaaaattctgCATAGGTC--TTGAATTT-----------GTCTCCAGGCTGAAACAGGTTGCCTTCCCAGAGAACAGCTTGAAGAATTTCTCCTGCCTCCAGTTCTACTTGGTAGACACATCCAATTGTCTTCTAA-AACTCACTCCCATGGTTACCATTAGTATGGAAACCTCAGTTTGTCCA-ATTATTCCTTAATCAGAGAAACTGACATTAGTTCTGACTCATCTCAgttgtaggtagaaatctcattTCCTTGTCAGAGACTTATTCAAGAACCATCATGTGGATTGATTTTGACCAAGCAAATGTGAAGGGAATCTTTGGGGCTGCGATTTGGAAAAagttactttaaa--------agaaaaacagaaatagatgTGATGTATGGAACTTCAGCAGCCATCTCTTGACTATGGGGGGATAGACTGAAGACAAAACTCCTAAGCCAAGTAAAAAGGCAGAAAGAACTTTGCTCTTTCATTATCTTGTGAAACTACTAAATCAGTCAACCTTAGAGCCACTTTCTC-TCCAGGGGTTGGGTTTTCTGTTgccacaggaaaaaaatcttcactGGTATACTCAGTTTCTTCAAAAACCTTGTGCTATAAGTTGTGGGCAGGTTTCCTGAACTAGGAGTCATCCACCCTTCATTCAACCCATCACACTGTCAAGGCCTGGCCATTCTACCTCTTAAATAAGTCTCATTCATC

a score=43508
s chr3           107162791 2171 + 160039680 CTGCTGTTTCAAGAAAGGGCCCAGAGCTAACCAGGCCATGGGTCTCAGCCTCACAAAGCTCCTGTCTGGTTAATTTGTTCAGTGTTT--CCCTCCCGCTCACCGTTCCTGACCCAGTTCCCCAT----CTGTTCTCTG-GGCACTAAGAACAAGACAGACAACAGTGACAGGAGGGACATCATGGGGCCCTATCCCTCTTGGGAGCCACCTGGGGCCTTCCTGAAGCTTCAGCCTATCCAGTCAAAAAAGTGTCCAACCAGTGATGGCCAGGGGT------AGATAGCTCTGGATGGCCCTTCTCACCAGTCAGCCAAAGCAGGAAGGTACCATGAAAATCT--CAATGTACAGTGGAGGCCTTGTAATTGTCT-GTTTCCCCCAGGGTAACCTGCCTCCACAGAAGCAGGTACTTTGGGGAGGATAATAAGGAGAAATTCAAGGTCCATCTCAAAAAATAAAAATGCTA-AGGCTGACCCTCAGCTCTCTCCCTTGGGACCTCCTGACTCCTCTCTAAGGAGACCAAGCTCCATGGCCAGCGTTAGAGAAACCGGAATCCCTACAGTAGAGGTGAGGACTGACAAGGAGTCCAGGGAGTGGATCACAGACTGAAGACAGATGCA-----CAGACAGCTGTCTCTTCCCAG--------TTCCCAAGAAGGAGTTGAAGACACAGCTGAGAGAGGCCTCTGAAACGCTTCCCACAATGGAGCACAATTTTCCAGCTGGGCACAAGTTCCCAGGCTGGCTGGACACTACTGCCTGAGCTTCTGTGGCCAGT-GTGCCCTCTTTTGCCTTGTTTCTTCACCTCAGATACCCCAGCATAGATGCCCC--CATCAGAGGAGCTTCCT--------GCAAGTAGAGAGGTCTGAAA-ATACTCGCCTGTTTCTGAGCTTGGGTGGCTGATCTCAGCCAGGTGAGCTGCTGGCGACAGCCAGCTGGGAAAGAAGAGTATGGAAGAGGGGGGCT----------------------------CTAAATGTGctctctctatctccaccctcctcccctcccttccgatccctcttcccttctgc----ttgcttctccctcctcctct------------actttcctttcttccccc---------ctcccttactctc--tccctctcccctt----------------tcTATGCAGAAAG-TCTTTCTACCCT-----TAAACTAGGACAAGAATGTTTTCCAAAACCCTAAAACATTCTTATTAAGGAAATTCACTCGAAAGAAGATACTCATCTTCATTTCTT-TAAAATGCAATGTAGAT----GAAATTTACATCACCAGCCTACCCTCTA----CTCCCCTCAGGAGAGCGAGGTGCTTATTACCAGACCTATATGGCCCTGGTTCATAGCAGGCA-GTAGGATCAGCATGGGCAAGGACAGACCCAAATTTACAGACTCTCATCTGGCTCCTGAACCTTGTTCTGTGTTGTGCACCCTGCTTGGCAAGTGAGATTAC--ACAGAGAAAGTGCCTTTGAG-ATCAAAATAACAACACCT-CCTCCAACAGCCCGAGGCTGCTCCCTTTCCCCTTGCCCAGGCT-GAACCTCAGCTAACCCACACAGCTCTTCACCACAGCACAG--TTGTC-------AGAGTCCG----------------TTAAAAGGG----------------------GACTGCACTTGAAGCACAAGGGA--TCCTGTGTCCTTGTGAGCAGAAGGAACAGAAAATGACTCAGAAAGTGTCTGCTTTTTTTCCCAATGAGAGTAACAAGGAGGTTAGAGTCATGGATATTAATT-TTCTTGGATTACTTTCATAGTCTGATAAAAATGATAAAATGTCTCCTTTAAAATGTACATTCACaaaaaaaaataaaata---------aaataaaataaaaCATACATGCAGCAACATCAGTGAGGCCATTGAACTTAG-CTAGTAACCCTATACCACAGGAT-------CAAT-CCACTCTCAGACTCATCCAAGAGGGACCATAACCTGAGCCTTATGCCTTTGAGGGCTTAGCTCTGTTCCCTCT-------GCCAGGCCCCTTGTGGGGTAAGGGACTGCTCACACC----------------TGT-------ACCGCTCTGCAGAGC-------------------CATGG---------GACCCAATTCCAGGGCCTACAAGTGCT-CTTCACCTGATTCATCTTCTGAAGGGTAGGTCCTACCATGA-TGCTTAACACCAGACTTATACATGCCATCTGTTGGCATGGAGACTTTAGAGTCCACACTGTGCATAAGGACCCTGCAAGagacagaaaaataca-------aagatgccccatcctgatccccaaaacctatgaatacattattttatgcagcaaaggaga
s HiC_scaffold_1 117726432 2258 - 233722169 CTGCAAGTTCTGAGCAGAGTTCATCATTAACTAGGGCACTGGCCCTGCCCTCACAGAGCTCCCATCTGGTCAGTTTTTCCCGTTTTCAGCCCTCCC-----------TTGACCCAGTTCTCCATATGTCTATTTTCTGAGGCACTAAGCATAAGACGAA----AGTGA----------------------------------AAGCAACCTAGCAATTTCCTGGAGCTTTGGTCTGAGAGCACAGTGAACTGTCAACTTAGCACTGTCTAGAGACTGGAACAAAGAACTCTAGCCAGTCTTTCTTACCTGGCAGCCAAAGAA-------CTCATGGAGACTTTCCAGTGTACAATGACTGCCTCATAATTGTCTCAGGTTCCCCAAGATAACTGGCCCCTTCAGAAACATGT------GGGTAGAGGGTAGGGGGA--TTTAAGCTCCATCtcggaaaataaaaattctgtggGATGCTCCCTGTTTCCCACCCTTTAtgcctctctgcttctctccaaG-AGATCAAGCTCACTGGTCAAAATGGAACAAGCCAGAAATC--------------AGGACTGACA-GGATCCTGCGAAGGAGCCTAGGGGCTGAAGACTAATGGAGAGGTTAGAAAATTGGC----CTCAGGAAAGAAGTGCTTGGAAAGGAGTTGGAGATGCAGAGCTGAGAGGTCTCTGGGCTTTTCCCGACAA--GAAAAGAACTCTCCAAGTGGGCACACTTT--------GGC---ATTCTAGGGGTCAAGCTTGTGGACCCACCAGTGCCCTcctttgctttgttctttcaCCTCACAC-CTCCAGGGAAGATTCCTCACCACCAGACAAGGCTCCTACAGACTAGCAGGTGGAGAGGACTGGAACACA-------------------GGATGGTCAGTCTCAGCAAGGTGAGCTGATGATAGCTCCACACCaggagagaagaa-atgaaagagaaaaatttatctgTGAAAGAGctgctttttaatttctgaacagagtccctct---tctcccctcctcctctctctcccattCCTTCTCCCCCTTTTCATCCTTGCTTCCCCCTCCcactctttctcttctccccttctcctttccttcccctttctccttctctcctactctccctccctctccccttctctccacATTTTCTTTCAGCACAGAAAAATCTTTATACAGTACAACTAAACTAGGGCAAGAATGTTTTCCAAAGCTTTAAAATACCCTTGTTAAGGAAATTCACTGGGAAGAACAAATTCTGCTTAATTTcgtagaaaataaaaaacagatggcAGAAATTGATGTCCCCCCTCCCTCCTCCAGATTCTCCCCCGAGGACAGC---ACGCCTCTGGCTCG-CCTGTCAGG--------CACATCAGGCAGGTGGGGTCAGAATAGCGATGACCAGGTCTACATGTGCAGTCTCCCATCTGG-------ATCTTGTTCAGCGTTGT---------TCGGCAGATGTGATTAAGGATGTGGAAAACACCTTTGAGTGTCAGTGAAGCAACACCTCCCTCTGGAAGCTTCTGGC-ACTCCTTTTCCCCTTGCCTAGTCCAGAGTGTCAGCTAACTCACAAGGGCTTATTCTGCAACCCAGAATTGTCACTGTAAAGACTTTGTGTATACTACTGGTTCTCAATAGAGCTTTACAATGCTGGGTTGTAAAGGCCACATCTTAGACACAAGGAAGCTTCTATGTCATTTTGGGCTGAAGAACAGGGAAATTATGCATAAAAGGTCAGCTTT------------GAGTTATA--GTGTTCTGGGTGGTGGCATTTAACTGTTTCTGGGTCACTTTTGGAATGTGATGAAAACTTTAAAACTCCCCC---------CACTCCTGCAAAAAAAAATGGGGAAGCTAcatatatacaaagaaaaaaatcttcaca-cAATTTCAATGAGTTTTTTGAACTCAGATTAATAACCCCGGATTAGAAGATTAGAGAACAATATCACCCTTAGACCTAGACAAGAGGGACCCTCCCCTGGGCCTCAATGCTTAAAGGATTCCACACTGGTCCTTCTCTTTCTAGTCAG--TCCTCATGGGGCAGGAGGCTGATCACACCCAAAGCCAATATCCCATGTCTGGATGATCACACTG-AGAGCTGCCACCATTAATTCTTTGCATGGATGGATTCAAGCCCATTTTCAGGGCCTGGAAAGGCCACTTCACCTGATTTATCCTCTCAAGGCTGAGTCCTGCCATTAGCTCTTATCACCAGAC---CATACAGCAGCTGTTGGCAAGGAAAATTCAGTG-CCACACTATGTACAATGACCCTATAGGAGGCAGGAAAATGCACCTCCATAGAAATTCACAGCCCATTCTCTAGAATCTA-AAATATGTTACCTTACTTGGcaaaaaaga

a score=46587
s chr3           107169118 2420 + 160039680 ggacaAAAAAGCAtaaaacttcataaccatcgaaaggactttgactgggcatcaagtgacatagggggacattgaaggacttgagggaaaggagatgtgaattagatttttgcaagatcattttggctactgcctggcaatgactttagggaatggaggacaaatgctggggagccagtcaggaagctactaggacagctcaatgtctgaaacacagcag--------aagagtggacatggcaaactgagtcataacttgggcatgtgttgtaagcagagcaatat----ttctgtaga-------------gtgagcaaatgaggggctgagaggaccaccagaggtgtccatctagacaactgaaaaatggcattgccactaag--ac-tgggaatatgcccagagaatctggttctat-ggaaatgtcagaagatgtgttttagacaggttgactttaaaatgctttcttggtatcagagtagagacatgagatgggc----agatagg-agacaagcttagagctcaggagagagagttccaggctggaagaaggtttagagtgaccagcatgctataaatgctaaatatagagagtaaaagcataagaccaaatgaga-cactgagcgagACCACGT---------------------------------GGCTCACTACCACATGCAATTCTGGGAACTAGAAACAGCTAGGGAGAGAGACTGAGGAGGAGTTGCCAGCCCTGC-AGT-CACAGCTACATCTGTGGCTCTGATTTGTTAATGATTCTAATCTTTGTTAGAGTCTACATC---------------CATGCCACCCAGGAGTGAAGAATGCTGTCTGA-GCCTACAGAAGGTGATGAGTCTGAAAATTAGATAGACATTCTCCCAAATTCATTTTGCTTCAAACCAGAA---CAGAACAAATGAAACATATAACCAGTTACATGCATAGAGATCAAAGATTGGGAGGAGTTGGGAGAAGGAC--------GGGCAGG----GAAAGGTAGACATTTCCAATGCAAAAAGGACAAAGAGGAGGGGAAGGGGACAAGACACAGTG----------CAGCCACCCTCT-CATCCAGCTGAATGACAGAA--------GACAATGAAGAGACCAAAATGTGTTTAACTGCTGTCTTGATTTTAAAGGTTCAATTATACTCATATAATTAGGATGCCTTCTTTGATTGAAGGATGAAAAGCCATGCTTGATTAGGACAGAAAATAATTAAAGAGGGCCACTCAGGAGCCACATTTTATAGCCAGTTGGCCCCTTTGTTTCTCATCCCGAGCCACATAGGAAACACTATCTCACAATGGTATG--------AGGTA-CTGTGTTTAGACCTACAGAGGTTGGAAGGCACCCCCAAGGACTGTGGTGTGTTGAATGTGGAAAC---------------------------------GGCCAAAGACTCTTTCAACACCTGACAAGAGGTGAGTCAAAAGC-------------------CTGCCAAACAGATGAC--AAGGTGACAAGATTTCTAATGTGTCCTTGAGTGAAAGAAGAAATTACCAAGACC-AACTGAAGGACTTCATATTCCAAGGAAAGAGATGGGAGATGTTCAAACAGGTGGATCTTAG---AGTTGGTTGTTGTTGTAAAGCAATCCACATGC-TGTGAAGATCAAATTTCTATAATAAAAAAAATACCACTCACCTTTCATTGAACATTTACAAACATCAATTAAACTCACTGcataaa----ctgtcttatttaattccaccaacaaccttgggaagtaagcatgtttgtttgtttttttaatacatgttttaca------aatgTGTTTAGACCAACCAAGGGGTCATTCACAAAGCTATTAAGCATCTACAATGGGTCTTGAGCCTCAGCTGGGCAGCTCTAGCGTCCCAATCACAGTCCTGTATCACTAACTTCCTTCCTGAAGTTTCAAAGCTATCAATCTCAACTTCTTCC--CATCCCTTCCCCACAGTTTTCTTTCTGGCCCCTCTGGCTGGCTTCCAGCCAGCCTTCA-TATCCATTGAGCTCATGGAC-AAGCATACTGGTAACTACTCTCTAGCTGCTCAAGGAATACCTTCTGAATTAAATGACCAGGACCAACCTTGACTTGAGTTCTCTGATTGGGAGAATAAAGAAGCTCTATCCTACAAG-AAAAGGAAAGGTGGTGAATTGAAGAGTTTACTGAGTATAGAGATATCCTGAGATAGTCATGTTTCCCGTGACTCTGA-GAGCCTTCCAAATCAACCAATGAGTATCTCTTAGGCCATCAGTGACCTCCTTTCCTCATTCAATATCAGGCAACTGATTCATATGACAATCCTCATTCTGTCATCACTACTGTTTCAACACAGTGTCAAAGCAACTAACTGGTCCACTAAATA-----------------------------CCTTAGGGTG----GAAGACATT----------TTGTGTTACATTTT-CCCTTTATAACTCTTGTCTGTTGACAATCAG-CAGAGCCCCAGCAGGGCTGCTTTGTCTTCAGCCTTCTCACCCACAAAATACAAGCTCACA-CATAGCCTAGGCATGCCCTGCAGT--CAAGTTGTTTTTCT
s HiC_scaffold_1 117734485 2510 - 233722169 GGACCAGATTACTTAAAGCTCTACAGCCAGTGAAAGGACTTTGACTTGGACTC---TGAAAT-GAGCACCATTGGAAAGTTTGAAGAGAAGAA-ACATGAATC-----TCTTTAAGATCACTTTGGTTGCTGTTTG--AAGAACTGTTTGGGGTGGC---------CAGAGAGGCCAGTTAGAAAGCAACTGGAATAATCCAAGTTAAAAAGTATAATGGCTTGGACTAAGGTAGAACA----AGATTAGGTTATACTCTGGATATACTCTATGGCTAAAGCAACATAACTTGCTGAAGATGAGATATAGGAAGTGAGAGAATGAAGAGTCAAGA---CCACTAAAAGGCTTTGCCTGGGCAGTTGAAA--TAGAGTTGCCACTTAGTGACATTGGAAGCTGCCCA----ATCTGGCTTGACAGGAAATATTAAAAGATCTTTTTTAGACACATTATGTTTCAAATAC---CTGTGAGTCTGAGTGCAGCTATTGGTTGGGAGAGAAGCTAGGTATACAAGCTTGGAGTTCAGCAGAGAG--TTCCAGACTGGAGAAAATTTTGGAGTTACAAACATGC---AGAGGCTCAACT---------GAAGCATGAGATTGGATGAGAGCACCAAGGGAAACCACCTAgatgaggaaagagaaggaaaagatcaGGTTCTGGGTCACTTCCACATA-AACTGAGGAACCTGTGAGCAACAACGGAGA----CCGAGCAGGAACAACCAGCACAGTTAGTGTATGACTGTATTTAATGCTATTACACCTTACATACTGTTACTATTGTTACTGGCTGCATCAGCAGCACAGATTCTCTTGTCAC-----AGTGA----TGCTCTCTAATGTCTACAGAGGGTG--------GCAAAGCATGCACCCATGCTCCCAGGTGGTTTCGTTATCAGAtccaaaacacagaacaaaagaaacacaagctCAGTTGTATG-----GTGCCAAGAGCTGGTATCAGAAGAAAGAAGGATTTCTCCAGGGGAAAGTTAAAACAGGCAAACATTCTCA-tgtataaaag-caaaaaagagaaagaaggaaagtcaCACAATTTCCAATCCTTCTGCCACCCTCTTCACCCATCTGAATGACAGAATAACCATAGACAATGAGAAGACAGAATCATTTTTAACTGCtgcttttactttaaaagttcAACTGTAATCATATAATTAAGGTGCCTTACTTGATAGAAGGATGAAAAGCCACACTTGATTAGGGCAGGAAATAATTAAC-AAGACCTTTTAGGAGCTATACTTCTTAACTAGCAGTCGCCTTTGACTTGCA--CTGAGGCATGCAGGAAG-------TCACAAATGTTTGGCAGACACAGGAATCTGTGTTCAGAATCACAGAGCTTGGAAGGCATCTGTA--GACTGTGATGAGGTGGACATAGAGACAGTCCTTACACAAAAGTAACCCTCAAGGCACAAAGCCAACAATTC--TCAGCATCAGGCAAGACAGAgatcaaatatataaacaatcCATGTGCAACCACCTGGAAGATAATGAAATGTGACAAGATTGCTAACATATCCTTCAGGGGGAGCAGAAACTGCCAAGACCAAATTCAACAAGCTCAAAGTTTAAGGAGACAGGAGGGAGATGACAGATAACATAGATCTTAAACTACTTGGTTGTTGTTCTTGAGCAATCCGCACACGTATGTATATCACGTGTGCACAAGCAAGAGAA------CTACATTTCATTGAGTATTCATAGGCAGTAACTAAACTCTTTGCATAAATAAGTTATCTTATTTAATTCTACCATCTGACTTGTGAGATGCCCAAG------GGTTATTTTTATGC---TCTTACACAAATGAATGTGTTTAGGCTTAGGAAAAGGCCA-TCACACCATTATTAAGAGTTAAC-TTGGATTTGGAGCCACGGCT---CAAGTCCA------CAGCCACAACCTCTGGTCATTGCCTCCTTACTTGGAGTTTCCAGGCACTTatcctcttcctctcccagcATCCCTTCTAC-----CTTCTTTCCGGTTACTTCTGCACACTGCCAGTAAACATTCAGCTTCTACCTACTTCATGCTCAAAACACAAAGTTCAGAACATAACATGAACCAAACAAGCATTTTCTGAATTAAATATTTGAGATAACCTGTGAATTGGAGTCCCCATGATGGAGAATGAGGAAGCTCAacactaaaagaaaaaggagaagcagaGAGCC--AGATTTCGAGGAGCAGAGAGGGAGACTG---------TTTTTCACATGACCCTAAGGAACATTCCAAATAGACC--------CCTTTGGGTCCATCACTG---CCTTGTCATTTTTCAGGATTAAGAAACTG-----------AATCCTCATTCTGTCACTACTGTTGTGTCAGCACAGTGTCAAAGC----AACTGGCCCAGTAAATAGTACCCAGTGGGGGAAGTGATCACCCAGGCCCTCTGGCACTATGAAGACACTCAAATCTCACTTGTCTTATGTTCCAACCTTTTGAACTCTTGTGTGATACTGAGCAGACATGACCCATGAACTACTCCTTGGTCTGTTGCTTTCTTGTCCAGAAAACTAGAGTTCACATTATTACCTACATATACCCTTTAGTCACAAATTTTTTTACT

a score=32093
s chr3           107171943 1817 + 160039680 AAATCAAATTATTTAACTATACATATTTCTGTTAAAGGCCTTCGAGCCCAAAGTCTGTGTCATGC-TGGGTAAAGTAATATTTAAGGAAATAACTTTTAGAAATCATCAAAAATTTTTCAGTGGCACTCCATCTTTTCATGTGTATGTGAGAATCAGC--TCCTTCCCACAACCCTAGGGTGACCAGTGGTCAATGCTCTAATGTCCAGGATCTCAGCACCAAGGACAGAGCCCACGCGGTCAAAGTGAGATGTCCAGTGTCTCAGCTTT-CATTACCAAGACA-GTTTGGATGAATTCAGAAGTGAAACCACAGAATTTTAGTGCTAGAGACCATTAAAAAACTCAACATTTTTTGTTTTATAGATGAAGATCTATGTCATTAAAAGAAAATAAAATGGCCTGCTGAACATCCCAGAGCCCAGACCCTGGAATTCAAGCCCTCTAAACCCCAGCTCCTTGCTCAGTGACTACACCACACTG--------------------------------------------------GGGGCCAG-------------------AGTCCCA------------------------------------------------------------------------TAAATACCCTAACCCTGCCT---------------------------------------------------------CTCTGTTTAAAAACTTACCCTCAGCTTTCAGGACTCAGACATTA---GTGCCAAGGTTGAACGT--TTCAGGAGGAAGGGAAAAGTAGGGAATACAAAGGAAAGCCATTTCCATGTCTCCCCAGTTAGAAGAGCTTTTCTTATTGCCTTCTGGGAGTAGGACCAGTTGGAAAGTG-GTGCAGGTAATGAAGCACAAGTAAGTAGATGGCTCTTGCCAAGAGCACAGCTTGGAAGAATGGATGGCAGAAGGGAAGCCCCAGATAGCCAAACCCAGGTCTGAGAATC----TGGAGAGACCATACCCCGGCCCCAAACCTCAACTAGGCCATAGCACTTACTGAAACCCCCAACAGATGCACAC-ACAGCAGGTTATTGATGGTAAACCCAGGCATGGCTCCTGCCCTCAGAGGGAATGTGGCCAGCCTGCTTGAGTCATCAGTCACACCACAGTGAGAACAAATTGGTGGCTCTTCCATAGGGGAA---TCTCCTATGCAGAAcattaaggaaccatttgactttaggcaactttatatgaactctctaggcc----actctaccccagctgtaaa-------acaaaaaggcttaag----------tagGAAAACATCCCA----AGGCTGGCAAACTGACTTGCAGGGATTGGGGAGCT-CCTGTAGGTAGCAGGTCACAGAATCACAAAGTCAAGGCCAGTGT-------CTTTCCTGCAACCATGCAAAGACACCC-TTTAGTCTCGCTTAAGATGTATGTACATTCCAAAAAAAAAAAAAAATgtcaggtgtggtagcacacgcctttaatcccagcactcgggaggcagaggcaggaggatttctgagttcgaggccagcctagtctacaaagtgagttccaagacagccagggctatacagagaaaccctgtctcgaaaaaacaaCAACAAAAAAGATGTGTGTACATCTGGGCAGATAACAGCAGCAGTCATAAGAACACAGGACTGGTTGTATCCACACATAGCCTACACAAGGCCAGCTGGCTGGATACCCAGAGG-AGCTTTCATTCTGATGAGCTGGCTATCAGC--------------------------TGGATAAATTCTATTGGCATCCTCAATCACATTTGGTCA-ATTTGTGTATATGGGTGTACACTGAC----CTTGCATGAACATCAGTGAAGAGGATCTGAATATCAATTAACTCAAA---AGAGCTGAAACTGTCCAATAGGTCACAAACTTAGCCAATCTGAACATAACATCTCCATCAGAACTACATGATAGAAACCCTAAAGACTCATCCAAGGTAAGTTAGTTAAAATATTTCATT-----ATGTTACTGGGATCATATGGCCATTTGCATCATTAAGATTCTCTC
s HiC_scaffold_1 117755594 1849 - 233722169 AAACCTAACTCTTTAAC----AATAGTTCTGTGACAACCCTTCAAATCCCAAGCCTATAGCCTGCctttttaaagcaatattttgGGG---------CCAAAATTGCCAAAAATTT--CAATAGTGCACCATTTG-----------GTGAAACTGAATCTTCTTTCCTAAAACC-------AATCAGTGGCCAGTGATATAAGACCCAATATCTCAGCATCAAGGACAGAGCCCAATTAACCAGCAAGTGACATCCAATTTTGTAACTGTGCAG----AAGACACACTTTTATGAATTCAAAA-TGGAATTACAGAAAATTAATGTTAGAGGCAATTAAAATGCTCGG-------TCTTTTACAAATGAAGATTTTGAGCCCTAAAC----CCATCATGACCCACTTAATATCCCAGAGCCAGGGACATAGGACTCAA-CCCTGAGAATTCCAGCTCTGCATTC--TCATTGCACtacactgattttctttttctttttgtgggggCGGGGAGGCCTGGATATATGGGGATTGGGCCCAGGGGCTTTACACTGAGTTATAGTCCcagttcttttacttttttattttgggacaagttcttgctaaatcATTGAGTTGCCTAAGCTGAGCTCAAATTAGTGaatctcctgactcagccttgtAGAGTTTTGGGATTACAAACATATACCCACCACCACACTGAAATCCTTCCCTTACCCCTCTACATAACCTTCCCTTAGTTGTCAGCATCCAGTCAATGCCGGTGCCAAGAGTGAATGTGTTTGGGAagtgagagagaggcagaaaataGGAACGAGAA--ACCTCCATTGTTCCCCAGTTGAAAAAGCTTCTCTTATTACCTTCTGGGAGTGTGACCAGTTGGAAAGAAAGTCCAGGTAATGAAGCACAAGTAAGTGGGTTGCTTTTGCCAAAATCACAGCTTGAGAGAATGGATGGCAGAAGGGAAGCCCCAGGCAGTCAAACTCAGATCTGAGAAACAATGTCTAGAGACTACTTCCCaaccccaaacctcatgcagtctGCAGCACATACTGACGCCCAAAAACACTGTGTGCAACACCAGTTTCCTAGTGTTCAGCACAAGCATGGTTTCTACCTTCAAA---------GCCAGCAAGCCTGAGTCACTAACCACACCACAGTCAGAACAAATC--TGTCTCTCCCATACATGAATACTTTCCCAAACAGAGGAATGTGGGG--GTGTGAAGTAAGGACAACTTACATAAATACT-TGGGCCTGAGAATTCACATCTGCTAAGAAGTTTGGGGTAAATGGTCTGGAAGGACCCCTCCTAAAACAACATCCCAGAATAGTCTTTTTGAGTAAGATAAAGGGACTGCAGAGGGACCTTTTGGTAGTAAGT--CTGAGTCTATAGGCTAAGCATAGCATTCATATCTTTTCCACCAAGCAGGAATAGGCACTCACTTGATCTCACCCAAAACTTATGT---------------------ATGCCTGG-ATAATAGCAC-------TAATTGTGGAA------AGGCAAAGACAGGTGAA---------------------------------------------------------------------------------------------------------------------------------------------------------TATTAACACAGAGGTTACGTAAGGCCAGCTGGCTGCAAAGCCAAGGACAGCTTTTATTCTGATGAACTGGCCACCAACAAGGCTATGAGCCTTGATCTTACAGACTGATAAATTCTATCAGTTTTCCTAATcaaattttgtcatatttggggATACTGACGCACACTAACTAATCTTTTGTGAATACTAATGAGTGACACCAGACTGTCAattaaatcacagtgagaaatgTAACTGTCAAAT-GATCAGAAACTTACTCAATTTGACCACAGTCTCTCAGCGGGAGCTAAACTATAGAAACATTAAAGAATCAGCCAAGATAAATTTATTGGAATATTTGATTGCCTAATGACATCAGGCTCCTAAAGTCATTTCTGTAAATGAGATTCACCC

a score=121235
s chr3           107174407 8146 + 160039680 [encoded data, 8937 characters]
s HiC_scaffold_1 117757625 7701 - 233722169 [encoded data, 8937 characters]

a score=5162
s chr3           107180607 171 + 160039680 CTTCCTTCCTATGCTCC-ACACTTGTGTCACAAGGGAATTCCTCTCTGGTCTTTAACTGCTTCACCCTCAAAGGGTCTCTTCTCCATGGAATGCCTTCTTCCCTGCACCCTTTTCTCAGTCTCCACCATCTTTGTTTTGATTCAGATGCCCCCTTGCAAAGATGCTCTCACT
s HiC_scaffold_1 117763162 167 - 233722169 CCTCCTTCCTGAGCTCCTGCACTCCAGGTATAAGATAATTGCTCTTCTGACCTTCACAGG-----ACTCAGAAAGTCTCCTCTCCACTGAACGCTTTCACTTCTGCATCCTCTTCTCATCCTAAATTACCATTTCTTTAGCTCAAATGCTATTTCCCAGGGACGCCCTTGCT

a score=75040
s chr3           107182788 6964 + 160039680 [encoded data, 8135 characters]
s HiC_scaffold_1 117768202 6978 - 233722169 [encoded data, 8135 characters]

a score=11421
s chr3           107190442 1296 + 160039680 TTTTTAAAGAGCATCTGCTGATCCCTTACAATGTGAGCTGTCTCGGATCTGGGCACCAT-GTGAGTTCCATGCAAGGTCACACACGCAGCCCGTGGCAGCCTGCAAAGCACCCTCCCATGTCATTTCCCTTGGTCCTTACCCAGATCTTGCAGAA-CAGTGGCAAAGCAAGCACTCTGATCTTT-GTTTGCTTGCTCTCCTTTTATCC-----TGAAGGATGCAGTGGCATACTGTGATGCACACTAGATCTAAAGCATGCAGCCTGGTGCTTTCTGATATGCGTATACACCTGTAAGACCATTACTGgtgcc---------------------------------------------cacttggtgattcct--cccgtcttcctgccctctctcccaggccactgctgatcagctttctgctgctctagattagca-tttctgaggttttgtattcatgaagttattctatatgttcctatctggctcctttgactcagcctattttcttATTATAGATGACAACACGGAGGCTTGATGAGACACTGCAAGCAGTTAGTGTAGACAATAGTCCTGGCTCAGAGCCCAGCATGCTGCCTGCCACTCATCCTTACCACTCCAtcattccatccccagacattaactgagcacttggggtgggctgagtttgtaaaactagacatggcccctaccctcaggaacatgcaatTACTCTTTCCTGTTTTTATTAACCAACCTTGTAAAGAATATTTACCAAATAACCACTCAGTGTGGGTGCACTGCTTAAAATGATGCTGTTTCTCAAACCCTCCACCCTCCTCCTACCTGCCACCTCAGACTGGACAC-----TGGTACAGAGAGTGATTCAAGATAAACCCTGTC---CTTCAGGAACATGCAAAAAACACAAGGAATGCCCTGCTAGGCATTGCC-TGTACTCTGGACACTTGAAGAGGTTGTAGGTACTGAGGCTGAGCCCGTGGATAGTGTCCCTCCACACGGAGAGCTGAAGAGTAGTCAGTGCA-GCAGGCCAGG-GCACACAA-AGGCAGA------TAAAGCTGGACTGGCCAGCATAGGTTCTGTGG------CAGGTTATAGACCATCTCCACATGAG----------CAGGGAAGATGACAAAGAGGCAACGTAACCTAG---------AAGTGGGACA---GCTTAGTGGTGGGTCAGGCAGAGCAGATGGAAAGGGTATGGAGTTAAGA----TTCCTGCATTTCCTCACATGGACCCCA-TTTCTACCCTTGAGTTTGCTGTAATG---------ATGAGGAAGGGAGGTAGGGAGGGTGAAGGGCAGTTACCCACATTTAAAGAAAAGATGACTTACAA----TTTAGAAAGTTACATCCCATGTAATTCTCAATATAAtct
s HiC_scaffold_1 117775401 1090 - 233722169 TCTTTATAAACCAGTTGCTGA-CCCTTGCAGCA-GAGCAGTCATTGTTCTGGGCACGACAGTGAGTGCTTCACAGATCTTTACACCTGACCTGCG--------CAA--------TCCACATCATATCTTTTGGTTCTTCCCAAAATCTTAAGGAATCACTGGCAA-GCATgcacctttattttttatttgcttgcttgcttctttaccactttttacatatttattaagaTACAATGATGTACAGTAGATTTAAAGCATGCAGCTTAATGGGTTCTGACACGTGAATGCACCTGTGAAACCATCACCACAGCCAAGATGAGGAGCATAATCATCACCCCTACACGAGTTCACCAGAGGCTCTTTGTAATCCTTTGCTCTCCTCCATGGCCCCGTTCCCAGGCAACCACTGATCTGCTTT---GTCCTCTAACTTTACATTTTCTGGGGGTTTATATTAATGAAG---------------------------------------------------------------------------TGAATCACTGC---------GTCCACACAAT------------------------------------------------------------------------------GCACT-------GTTCAAACTTGT----------------------------------------CTCTGTCCC----------------------------------------ACCAC----------------------------GCTGATTCTCA-----TCAGCCACTTGCCTAGCTGCCACTTCAAGCTGGACACTAGGGTGACAGAAATAGGAATCAGAGGTGAGTCTTATCTCACCTCAAGGCCAT--ATAGAACAGTGGGAAAACCTTATAAGACACCATCATATAGCCTAAAAACTGTGAGAG--TGTAGGAGTTAAGGCTAACCCCATGGTTAG----CCTCTAAACTCAGTGCAAAAGAAAGATCTATGCAGGCAGACTAGGAGCACAGAAGAGGGAGGGACTCTTCCAACTGGACTGG--------GGATCCACAGACAACACAAGACATTGACATTCTCTACATGGACCGGGACTGTCAGGAAAAATGGGAGGGAAA-AATGCATACTAGGCAGGACAAAACAGGGACAAAGGCATGGAGGCAGGTCAAGCAGAACAGATGGGGAAGATGGTGAGCTGAGAAGTCCTCCTGCAATTCTTCACatgaaatgtgttttcttccCACAAGGATGTTATATTGGGTTTATGTGTGGAGCAGAAGGGAGGGAAGTGTGGAGGataattctttacattt-----taaagtaatttacaaAGTGCTTTGACTATCATACCTTATTTAATTCTCAGTATAATCT

a score=159854
s chr3           107192186 3763 + 160039680 [encoded data, 4315 characters]
s HiC_scaffold_1 117776478 4167 - 233722169 [encoded data, 4315 characters]

a score=48784
s chr3           107194218 1255 + 160039680 CAACACCAACCATGAAACTGCCTTCTCCAAGATCC--CAGGAGAGTATGTGGATCCCCCGGGACC---------------TGAGCCAGTGGTCTTGAATGAGGGAAACCAAAGGGTGATCATCAACATTGCTGGTCTGAGATTCGAGACTCAGCTCAGAACACTTAATCAATTCCCAGAGACACTCCTGGGAGACCGGGAGAAAAGGATGCAATTTTTTGACTCCATGAGAAATGAGTATTTCTTTGATAGAAACAGACCTAGTTTTGATGGAATCTTATATTATTACCAGTCTGGTGGGAAAATACGGCGGCCAGCCAACGTGCCTATCGATGTTTTCGCTGATGAGATCTCCTTCTATGAACTGGGTAGCGAGGCCATGGACCAGTTCCGGGAGGATGAAGGCTTCATTAAGGACCCTGAGACACTGCTGCCCACCAATGACTTTCACCGGCAATTCTGGCTTCTCTTTGAGTACCCCGAGAGCTCCAGTGCAGCTCGAGGAGTGGCTGTGGTCTCGGTTTTGGTTGTAGTCATCTCCATCACCATCTTCTGCCTGGAGACACTCCCAGAGTTCCGAGAGGACAGGGAG-------CTGAAGGTGGTCAGA-----------GACCCCAGCATCAATACAAACAA--AACAGGCCTCTCCCAGACCATGTTCACTGATCCTTTCTTCATGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTTGTGGTCTGCCCCAGCAAGACTGACTTCTTCAAGAACATCATGAATATTATTGACATCATCTCCATCATCCCCTACTTTGCAACCCTCATAACAGAGCTAGTACAGGAGACCGAG----CCAAGT--GCCCAGCAGAACATGTCCCTGGCCATCCTGAGGATCATTCGTCTGGTGAGGGTCTTCCGCATCTTCAAGCTTTCTCGACACTCTAAAGGGCTGCAGATCCTGGGGCAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGTGGATGAGCCAGAGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCTGTGGTCACCATGACAACTGTAGGCTACGGTGACATGTGCCCAACCACCCCAGGAGGAAAGATTGTGGGTACTCTGTGCGCCATTGCTGGTGTCCTCACCATCGCCCTCCCTGTGCCTGTCATTGTCTCCAATTTCAACTACTTCTACCACCGTGAGACTGAGAACGAGGAGAAG
s HiC_scaffold_1 117666852 1289 - 233722169 CAGTCCCAATTATGACAGTGGCCAC-CGGAGACCCAGCAGATGAGGCTGCTGCCCTCCCTGGACACCCACAGGACACCTATGACCCAGAGGCAGACCATGAGTGCTGTGAGAGGGTGGTGATCAACATCTCAGGGCTGCGGTTTGAAACCCAGCTTAAGACCTTAGCCCAGTTTCCAGAGACCCTCTTAGGGGATCCCAAGAAGCGGATGAGGTACTTTGATCCCCTCCGGAATGAGTACTTTTTCGATCGCAACCGCCCTAGCTTTGATGCCATTTTGTACTACTATCAATCTGGTGGCCGGCTGAGGCGACCTGTGAATGTGCCCTTAGATATATTCTCTGAAGAAATCCGGTTTTATGAGCTGGGAGAAGAAGCTATGGAGATGTTTCGGGAGGATGAAGGCTATATCAAGGAGGAAGAGCGTCCTTTGCCTGAAAACGAGTTTCAGAGacaggtgtggcttctctttgaATATCCAGAGAGCTCAGGGCCTGCCAGGATTATAGCCATTGTATCTGTCATGGTGATTCTGATCTCAATTGTCAGCTTCTGTCTGGAAACATTGCCCATCTTCCGGGATGAAAATGAAGACATGCATGGTAGTGGGGTGACCTTCCATACCTACTCCAACAGCACCATGGGGTACCAGCAGTCCACTTCC--------TTCACTGACCCTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCTCTTTTGAGTTTTTGGTGAGATTCTTTGCCTGTCCCAGCAAAGCAGGCTTCTTCACCAACATCATGAACATCATTGACATTGTGGCCATTATCCCCTACTTCATCACCCTGGGAACAGAGTTGGCTGAGAAGCCAGAGGACGCCCAGCAAGGCCAGCAGGCAATGTCACTGGCCATCCTTCGTGTCATCCGGTTGGTAAGAGTCTTTAGGATTTTCAAGTTGTCCAGACATTCCAAAGGTCTCCAGATTCTAGGTCAGACCCTCAAAGCCAGCATGAGAGAATTGGGCCTCCTGATATTCTTCCTTTTCATTGGGGTCATCCTTTTCTCTAGTGCTGTCTATTTTGCAGAAGCCGATGAGCGAGATTCCCAGTTCCCCAGCATCCCAGATGCCTTCTGGTGGGCAGTCGTTTCCATGACAACTGTAGGCTATGGAGACATGGTGCCAACCACCATTGGGGGAAAGATAGTGGGTTCCCTGTGTGCAATTGCAGGTGTATTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCAccgagagacagagggagaggagcAG

a score=53641
s chr3           107194315 1233 + 160039680 GTGATCATCAACATTGCTGGTCTGAGATTCGAGACTCAGCTCAGAACACTTAATCAATTCCCAGAGACACTCCTGGGAGACCGGGAGAAAAGGATGCAATTTTTTGACTCCATGAGAAATGAGTATTTCTTTGATAGAAACAGACCTAGTTTTGATGGAATCTTATATTATTACCAGTCTGGTGGGAAAATACGGCGGCCAGCCAACGTGCCTATCGATGTTTTCGCTGATGAGATCTCCTTCTATGAACTGGGTAGCGAGGCCATGGACCAGTTCCGGGAGGATGAAGGCTTCATTAAGGACCCTGAGACACTGCTGCCCACCAATGACTTTCACCGGCAATTCTGGCTTCTCTTTGAGTACCCCGAGAGCTCCAGTGCAGCTCGAGGAGTGGCTGTGGTCTCGGTTTTGGTTGTAGTCATCTCCATCACCATCTTCTGCCTGGAGACACTCCCAGAGTTCCGAGAGGACAGGGA------------------GCTGAAGGTGGTCAGAGACCCCAGCATCAATACAAACAAAACAGGCCTCTCCCAGA------CCATGTTCACTGATCCTTTCTTCATGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTTGTGGTCTGCCCCAGCAAGACTGACTTCTTCAAGAACATCATGAATATTATTGACATCATCTCCATCATCCCCTACTTTGCAACCCTCATAACAGAGCTAGTACAGGAGACCGAGCCAAGTGCCCAGCAGAACATGTCCCTGGCCATCCTGAGGATCATTCGTCTGGTGAGGGTCTTCCGCATCTTCAAGCTTTCTCGACACTCTAAAGGGCTGCAGATCCTGGGGCAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGTGGATGAGCCAGAGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCTGTGGTCACCATGACAACTGTAGGCTACGGTGACATGTGCCCAACCACCCCAGGAGGAAAGATTGTGGGTACTCTGTGCGCCATTGCTGGTGTCCTCACCATCGCCCTCCCTGTGCCTGTCATTGTCTCCAATTTCAACTACTTCTACCACCGTGAGACTGAGAACGAGGAG-AAGCCAAACAT---CCCAGGAGAACTTGACAAAA-------TCCTCAACAGCATGGGCTCCAGAATGGGGAGTACTGAGTCTCTCAAC
s HiC_scaffold_1 117602139 1253 - 233722169 GTGGTCATCAACATCTCGGGGCTGCGCTTCGAGACGCAGCTCAAGACCCTCTGCCAGTTCCCCGAGACGCTGCTGGGCGACCCCAAGCGGCGCATGCGGTACTTCGACCCGCTCCGCAACGAGTACTTCTTTGACCGCAACCGGCCTAGCTTCGACGCCATCCTTTACTACTACCAGTCCGGGGGCCGCATCCGCCGGCCGGTCAACGTGCCCATCGACATCTTCTCGGAGGAGATCCGCTTCTACCAGCTGGGCGAGGAGGCCATGGAAAAGTTCCGTGAGGACGAGGGCTTCCTGCGGGAGGAGGAGCGGCCCCTGCCCCGCCGCGACTTCCAGCGCCAGGTGTGGCTGCTGTTCGAGTACCCCGAGAGCTCCGGGCCGGCCCGGGGCATCGCCATCGTGTCCGTGCTGGTCATCCTCATCTCCATCGTCATCTTCTGCCTAGAGACGCTGCCCGAGTTCCGAGATGAGAAGGACTACCCAGCCTCGCCATCGCAGGATGCCTTCGAGTCAGCCAGCAACAGCAC------GTCGGGGCCCCCCGGGGGAGCCTCCAGCTTCTCAGATCCCTTTTTCGTAGTGGAGACCCTGTGCATCATCTGGTTCTCTTTTGAGCTGCTGGTGCGTTTTTTCGCTTGCCCCAGCAAAGCCACCTTCTCAAGAAATATCATGAACTTAATAGATATTGTGGCCATTATTCCTTATTTTATTACTCTGGGCACCGAGCTGGC-TGAGCGACAGGGC--AACGGACAGCAGGCCATGTCCCTGGCCATCCTCAGGGTCATCCGTCTGGTGAGGGTCTTCCGCATTTTCAAGCTCTCCCGTCACTCCAAAGGGCTGCAGATCTTGGGGCAGACATTGAAGGCTTCCATGCGAGAGTTGGGCTTGctcatctttttcctctttattgggGTTATCCTTTTCTCCAGCGCGGTCTACTTTGCGGAGGCAGATGACCCCACTTCGGGTTTTAGCAGTATCCCAGATGCCTTTTGGTGGGCAGTGGTCACCATGACAACAGTTGGTTATGGTGATATGCACCCAGTGACCATTGGGGGCAAGATTGTGGGCTCTCTTTGTGCCATCGCGGGTGTCTTGACCATTGCATTGCCAGTTCCTGTGATTGTTTCCAACTTCAATTACTTCTACCACCGGGAGACCGAAGGGGAAGAGCAAGCCCAGTACATGCACGTTGGAAGTTGCCAGCACCTCTCCTCCTCAGCAG-AGGAGCTCCGAAA-----AGCACGGAGTAACTCGAC

a score=7606
s chr3           107194862 530 + 160039680 CTTTCTTCATGGTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTTGTGGTCTGCCCCAGCAAGACTGACTTCTTCAAGAACATCATGAATATTATTGACATCATCTCCATCATCCCCTACTTTGCAACCCTCATAACAGAGCTAGTACAGGAGACCGAGCCAAGTGCCCAGCAGAACATGTCCCTGGCCATCCTGAGGATCATTCGTCTGGTGAGGGTCTTCCGCATCTTCAAGCTTTCTCGACACTCTAAAGGGCTGCAGATCCTGGGGCAGACGCTGAAGGCTTCCATGCGGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGTGGA----TGAGCCAGAGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCTGTGGTCACCATGACAACTGTAGGCTA---CGGTGACATGTGCCCAACCACCCCAGGAGGAAAGATTGTGGGTACTCTGTGCGCCATTGC-TGGTGTC
s HiC_scaffold_1 116062688 499 - 233722169 CCTTCTTTTGCCTGGACACAGCCTGTGTCATGATCTTCACCGTGGAATACCTCCTTCGGCTCTTTGCAGCACCCAGCCGCTACCGCTTCATCCGCAGTGTGATGAGCATCATTGATGTGGTGGCCATCATGCCCTATTATATCGGCCTGGT--CATGACCAACAATGAGGAT--------GTGTCTGG--------GGCCTTTGTCACGCTCCGGGTCTTCCG---------AGTGTTCAGGATCTTCAAGTTTTCTCGCCATTCCCAGGGTCTGCGGATCCTGGGCTATACCTTGAAGAGTTGTGCCTCTGAATTGGGCTTTCTGCTCTTCTCCCTCACCATGGCCATCATCATCTTTGCCACTGTGATGTTTTATGCCGAGAAGGGCTCCTCTGCCAG----CAAGTTCACAAGCATCCCAGCCTCCTTCTGGTACACCATTGTCACCATGACCACACTGGGGTAAGTCAGTGTTACTGGACCCATC--------AGGGTAGAGGCTGGGTGGGCTGTGAAGCTTTGTGTGGTGTC

a score=12950
s chr3           107194873 575 + 160039680 GTGGAGTCCACCTGCATCGTGTGGTTCACCTTTGAGCTGGTGCTCCGGTTTGTGGTCTGCCCCAGCAAGACTGACTTCTTCAAGAACATCATGAATATTATTGACATCATCTCCATCATCCCCTACTTTGCAACCCTCATAACAGA-GCTA--GTACAGGAGACCGAGCCAAGTGCCCAGCAGAACATGTCCCTGGCCATCCTGAGGATCATTCGTCTGGTGAGGGTCTTCCGCATCTTCAAGCTTTCTCGACACTCTAAAGGGCTGCAGATCCTGGGGCAGACGCTGAAG----GCTTCCATGCGGGAGCTGGGGCTGCTCATCTTCTTCCTCTTCATTGGGGTCATCCTTTTCTCCAGTGCAGTCTACTTTGCTGAGGTGGATGAGCCAGAGTCCCATTTCTCTAGCATTCCTGATGGCTTCTGGTGGGCTGTGGTCACCATGACAACTGTAGGCTACGGTGACATGTGCCCAACCACCCCAGGAGGAAAGATTGTGGGTACTCTGTGCGCCATTGCTGGTGTCCTCACCATCGCCCTCCCTGTGCCTGTCATTGTCTCCAATTTCAACTACTTCTACCA
s HiC_scaffold_1    905843 569 - 233722169 GTGGAAGTCGCGTGCATTGCCTGGTTCTCGGGGGAGCTCGCCATCCGTCTGGCTGCCGCTCCCTGTCAGAAGAGGTTCTGGAAGAATCCCTTGAACATCATCGACTTTGTCTCCATCATTCCCTTCTACGCCACGTTGGCGGTGGACACCAAGGAGGAGGAGAGCGAGGACATCG------AGAACATGGGCAAGGTGGTTC---AGATCCTCCGGCTCATGCGGATTTTCCGCATCCTGAAGCTTGCCCGGCACTCAGTGGGACTTCGGTCTCTTGGGGCCACACTGAGGCACAGCTACCATGAGG----TCgggctgctgctgcttttcctttCTGTCGGCATCTCCATCTTCTCCGTGCTGATCTACTCTGTGGAGAAGGACGAGCTGGCATCCAGCCTCACCAGCATCCCCATCTGCTGGTGGTGGGCCACCATCAGCATGACGACTGTGGGCTATGGAGACACCCACCCCATCACCTTGGCAGGGAAGGTCATCGCCAGCACCTGCATTATCTGTGGCATCCTGGTGGTGGCTCTTCCGATCACCATCATCTTTAACAAGTTTTCCAAGTACTACCA

a score=23608
s chr3           107200796 1450 + 160039680 AGAGGAGGCTGCC--------CTCTCCCTG-----CTCCCTCTGGGGTCCCTAACCTGACTGCAGAGGGTTGGTGTCTGGGTTGGAGACACTATAACAGTAAGTAAGTAAAACTCTCCCCGAGAGTTGCCAGCTGCCTGCTGATGCTGAAGTAGTTTTGTTCAACTGAGGCAGGAGATGTGTCCACAAAGAAGCTCAAGTT---GTGTTATGTGCCCTTTGTGTATAGAGCGACTTACTGTCATGGAGTCT----------------------ACAGCTCTGTAAATAGTGGGAAGGAACTTTC-----------TATAAG----------------AGAAGGATCC----------CACAGGAC-TCAGTCAAGACTCA------------------------------------GAAGAGCAAGAAGAGGGAAACCCAAAAGGCAGCTGAAGGCCTCTCTGAGGACCCAGCCA--CATCCTTCGAGGGCTTTTCTTCAAGGA---CTTCCCTTCAAGAG-----GCTCAGGACTAACAATCTGGTGGTCTCTCTCCTTCAACCATGG-CTATCTGCATTGCTCACC---GGC---TGGAGCAG---CCTCTGCC--------CATCTCAGTGGGCTCA------------GAAGAACAAAG--CAGCCCTCCC--ACGGGAACAGGGAGTCCACCTAGGCCAGATGCCAGGGTCTCACCCTCTC------CCTCCCT-------ATGAAGGAAACTCACAAGGTGCCCTTCCCTGCTCAGCAGTTGATTGGAGCCTACTGAAAGATGAAACATGCCCCATCCACCAGGCTGAGTGGAGTG-CTCAAAGGCTCTTTGAAGGGAAAGAAAGAAAGACAGCCCAGTCTCCCTGGGGACTGCTGT----------------------------CAGGAGAACATTTGCCCTCAAACAGGGAGATGAAAAGGAGCTGGGGGTTG-----------GCAAAGAGGGAGAGGAAGATCAGACAAACTTTTGTTATGGAATCTCAGGGGAGGCGGAGGTAAAGGGCTTCCTTGGAAATGTCACGAGATAATGAATGCTATTTTACTCCCATTGCTGAAGTGTCAGTCAGAGGCTTGGGGAGAGAA-GGC-GTGACTCTCTCCTTAGGAAGGAATTCTGGGTGA----TCTTGTATGTCTCAGAACCAGAGGGGTGATGGCT--GAGCCCTCT------GCAGTCTGCAGGGCTCCCGCATGCGC----------------------AAAATATAAATATAACAATACAGAAGTAACAAA-AACACCACACTAGTAAGATTATCGTGAGATTTAAACAGGGTGCTCTGTGAAACTCAGCAA--------------GCTATACAGGTTCCCATGCAAACCAGGAGTGTGC-AAACAGTGACTTGACACTTAAATGACAGATAAAT----------AGTCTGCGGATGGTGGGTAGAGCCTAGGATAAAAGCCCACCTGTCACTTATAAACTCTGCAGGGGTCACAGCTGCATTCTTTGAGTGTAATGACCCCAGGACTGTGTCGGGTACATAATAAGTGATCAA-----AAAAGGAAGGACTGAGACATAAAAGGACCAAGTCAGAGCCCACCAAGAATCCCCATGCTTCCCAAATTGACACCGAATTGACATTAATTATGGTCC----ACCTGAAAAAATGTTTCTTGggtggtagt
s HiC_scaffold_1 117785265 1616 - 233722169 AGTGGAAGCTGCTGTCCAGTTCCCTACCTGTCTGTCCTCCTCTGATGTCCCTAACACACCTGC-------CAGACCCTGTATTAGTGACCTTTCTCTGCTACGTGTAACAAACCCTCCCAGAGAGCTGCTGGC---CTGCAGAGA---GACTTGATTTGCATGACTGAAGCAGAAAATGCATCTA-AGAGAGACATGGGTTTTTGCATTAAGAGC---TTATGTGCATTGTGATTTACTGAGATCTGGTCTGTCTGTGACTTTCTTCTCCCAAACATCCTTCTGAGCAGTGAGGAGGGGTGTCTGCTTGGCATGGTACAAGCAGTAGCTACAGCCCAAAGAGAATCCATGTCCTTCTCAAAGGACAGCTTTCTAAACTCCCCTGCTCCCAGGTGTGCTTCCTAGTGGGCATAATTTAAAGTAGACAAAGAGATGGACTTGTAAGTTCACTCAGG---------AGGATCCATCTGGCCTGCCTTTGAAAGCTCTCCAGTGGGGCAACCTAGCTTTCAACTGCAACTGCTCTGGACAGGCAATCTGGAAGTTCCTCCCC------CATGGTCTGGCTTC-TTGCCCACCTTGGGCACGTGGAGAGGACTCTTCTGCCTTAGCACACCCCCCAGAGTGCTGAAAGTCCGCCAAGGGAGATCCAACACCAACCTTCCAGGACTGAAGCAGG-----CTCCCAGCCCTG-TCCCAGGAGCCCATCCTCTAATTTTGCCTCTCTGGATTGCAGAAAGGAAGTGCCTAAGGCACCTTCTTCTGCTTGGCAGTTAACTCCATCCccttaaaaaataaagcacatcTAGCTCATCTCATGGAGTGGAGTGATTCAGGGGCCCTttgaagtaggaagaaaaaagGCTGCCTGGACTCCCAAGGGACCAGTGTGTTTGCTCCTCTGACACATCCTTAGTGACAAGAG----TTTGCCCTCACAGGCAGAGATGAAAAGGAACTGGGGGTGGTAGGCAACTGGGGAAATAGGAAAAGGAAGATCAGACAAACTTTTGTTATCACATCTCAGGGGAAGCGGAGGTAAAAGGCTGCCTGGGAAATGTCACTAGATAATGAATGCCATTTTACTCCCATCGCCGAGGTGTCAGTCAGATGCTTGGAGAGAGAATGGCAGTGATCCTCCTT------AGGAATTCTAGATGAATCTCCTCATACTTCTCCCAACAAG-GGTACCCTGGCTCAGAGCCCTTTCCCTTACCACTCT---GGTCCCCCACTTGCACCTTATTAttcaattattaacagaaataataaatataacaa-----aaacaataaataacacTAGGCTCTCATAATcactgtgagaattaaataatatactac-CAAGATTCATCAACAAATGGAAAATGTGCTACACAAGTGACC--------------TGTGCTACACAGTGGCCTAATCCTCACATGGTAGATCCATGCTGGATGACAATCTGTGAAGGGTGGTTA-AGCCTGATATGAAA-TCTGTCTGTGGACTAGAAATTCTTCAAGGGCCATGGCTG--TCCCAGTACTGTTGTAACTGCAGCACAGGGTCTATTCCATAATAAATCCTCAacaaagaaagggagggaaagagaaaaaaaaggaaaagagatgagcCC-------------------------------CCAAATTGATAGTAATTAGGACCCATCTACCTGGAAAG------CTTGGGTTGAAGT

a score=13976
s chr3           107204667 1719 + 160039680 TCCCTCTTGAATCCAAATAAATCCTACAAGGCTGGTTCAGATCTACAGCCAGGCTGGCATCCAGTGATGGGCATGTCCATGTGGAGTCTTATGTCCAGTTCCTCTGA---CTCTGGCGAAAGACAA---TTTCTTTAGAGTC-CAGATTTCTAATCTCATTTGTCTCTGTTGG--CTGTGCGGAGGACTTCTGGGCATCCTGTGGACTCAGGAAAACACTT-----TTCTCTATTATTTACTTATTGT------CCTCA------------------------CACGTGGAGAACATGCGCTGAGATCTGTGTCCCT----------------------------------------GAGATCTGGGA-------------------------------------------TGGAGACTGT---------------------------GGCTGTGGTTGGAGG-------TCACAGGGGAAGACATTACTTTCATATTGTCCTAGCACCAGTTCAAAGCTGCAGGAGGTATGACTG------ACCCTACAGAACACTGCCAGAGAAGCACACAGGCTTATCTGCAGA---CTCCTGTTCCCTCTCATGCGCCTTAGGAAGAAAGCTCTAATGGCACAGTTACTCTAGTCCAGATGCTAAGCAGAGTCCTAGGAAAGAAGAAGGTTCTCAAGTGTCATGGCCTGAACTTGGAACCCAGGGGTAAAGCTTCAACCATGGCTATTGGAGACTGCATCTCCCATACCAGAGGAGACTTCCAAGGCCACCACAGTCCTCAAAAGAGAAGTGAAACTCTACCAAAGAGAAGAGGGaaatgagttttcccattgtggtggttagaatgtttggatcccatagactcatgtgtttgaatgcctagtccatgaggtgtggcactatgaggaggtgtggccttgttggagtaggcatggacttgttggcagaattgtgtcactgtgggggcaggctttgaggtctttggtgatcaatctctgaccagtgttgggccagtctcctcctggctgccttc--agatcaagatgtagaactcccagattcttctccagcaccatatctgcctagacgctgccatgcttcccgccataatagactaaacctctgaaatgtaagtcagccccaattaaatgttttgttttataagagttgccagggtcatggtatctcttcacgaccatgaaaatcctaaGACACCCATCTCATTCAAGCCCAGCCTTGGCACCAGCCCCAAATCCCCATAG--GATCTCGTGGGTCAGATGCTAGC--------------------ACTGTAAATGCTGAGGAGGGGTGGGGCAGGATTCCCTGCTGACCTGGAAGACCAGTGCTGCCCTGAATCCCTTAAGACACACACAGTAGACACATTCTC-CCCGGACAGCTC-AGCTCAGCACACAAACCCAGTATCACA-ACATTCCAGAAAGATTGGAGAGACAGGACTCTGGAGACCAAAAACAGAAAGAAAAGCTAATCAGAGATATCTGGAGTTATGGGGTCGAAGACTGGGACTCCTTTTTTATCTGTGTCCTGAAGAAGCTGCCACTATGCTTTGCATGAGGGAGA----CAGTCAACTCTATTGTCTACTTGACCACTGCCCCCAAAGTCACCTGAAGTGGCCAAGAATGTCCCAAGGTATAAACAAGATGCTCTAAGTTGG---------------TCTGGTCACTAGAGGGCGCTCCAGGACTAGAGCTGCCTCCTGGGCTGGAAAATTGAAGATCCTGTGTTT-GTTTATTCACTCAACATTAAGCACATTAATACAGAACA---ATTCTATGCCAACGCTAAACGCTATAAAGAGTT-GGAAATGACTCA----------TCTTTCATTAGAAAGCCAGAAAATATGAAAAATAAATAGTGTATTCATGTTTACCCA
s HiC_scaffold_1 117796179 1497 - 233722169 TCCCTCTTGGGACAAAATAAATCCCTGAAGCCTAATTCACATGTATGACTGAACTGCCACCCAAAAATGAGAGCATCCACACAGCACTTTGTACACAAATTCATTGTACTCTCTGGCCAGAGACAACAGTTTCCAAAAATTCTCAGATTTCTAATCCATTGTTTCTTCGAAGGGCCTGTCTGGAA---CTCCAGGAATTTTGCAGATTCAAGACAGTACCTGAGGATTCTCCACCCTTTGTGTATTGCGTGCGCTCTCAAGAGGTGTGCCCATATGCTAAATACAAGCAGGGAACTCCAGCTGAGGCCAG-GTGCTTCACATCTCAGGACAAGAACCTGACCACCAAGAGCCTCAAGGAGCTCTAGGAGAACTGATTCAAGATAGCTGCCCACAATGCACTTGGTTGCACATGAATGATGCTCTCAACAAGAAAGGAGCTGACCTGAGGGCTGTGGTTGGGAACTCGGACTCCCAGCACAGAAC-TCATTTGTAAACTTCTCAAACATGAGTTGAAAGCTGCAAGAGGTATGTCTGGTGTCCACCCACCTAGACACCCCCTAAAA--CACGTAAACCTATCTCCAGAGGCTCCTTACTTCCTCTCAAG-GCCCTAAAAATAAATCTCCAAGAACACAGTTATTCTGGTCTCAATGCTAAGTGAAGCCCTGGGAATGAAAAGTGCTCTCAAGTTTCATGG--------------------------------------------------------TGCAGGCCAGAGGAGAC-----------------------------------------AGCAAGGACGAGAGGTA---------------------------------------------------------------------------------------GAAGAGGC-------------------------------------------------TGAGCACAGGCT----------------TCAGTCT-----CAGTTTTGAGCAAACCTA-----GGCCACCTTCCAAGAAGAGGTTGCTAAGCTCACAAACAGTCCTCCAAAAGGA---------------------------------GATAGAATTTACC--------------CAGCCCAAA------------------------TGCCTG------------------------------------------CACCTTACCTAGTCCCA------GCACCAGCACTGAATCTCCATGGAAAATCTAATGGACCAGACGCTGGCTATTTTTCCAGATCCCATGAGCTGAAAGTGCTATGGAAGAAT-----CAGCTGTCCTGCTGACCTGGGCAGCCAGTGCTGCTCCAAAACCCATGAGGCATGCACAGCAGGCACATCCTCACCTGGCCCACTCTGGTTTAACATGTAATTCCTGCATTACAGATGGCCCAGAAAGGTCCAAGACAGAGGCCACTGGAGAACAAGGACTGACCGAG---------TGAGGTGTCAG-------------------------TCC-------------TCCTGCAGAAGCTTCCACCTTGCCCACCATGTGGGAGACACTCAGGCAATTTTATTGTTGAGTTGGCCACAACCCCCAAGTTCACCAGGTGTAG-GAAGAAAGCT-----GCATAGACGAGGAGTTTGGAGCCGGTATTTGATATTAATATCTGGTCACTAGAGGGCGCTCCAGGACCAGCGCAGACTCA-AGTTTGGAGGTTTGGAGAGGGACAGTTTAGTTCATTCATTTAATAT-----ACATT--TACTGAACAACTACTCTGTGCTAG-AATAAGAGCAATAAAAGGCTAAAAAATGATTGAGGTATGGCTTTCATTCATTAGAAAGAGAAATAGTATTAAAAAAAGatagtgtatttttatttatcta

a score=47218
s chr3           107207527 4195 + 160039680 [encoded data, 4831 characters]
s HiC_scaffold_1 117797876 4251 - 233722169 [encoded data, 4831 characters]

a score=3425
s chr3           107207616 60 + 160039680 GGGTAGGACTCAGCCATCAGTTATTCCTGCCATTTAGTAAAAGAGGGTTTGGGACTAACA
s HiC_scaffold_1 158081527 60 - 233722169 GGGCAGGACTCAGACACCAACCATTCCTGCTTATGAGTGAAAGAGGTTTTGGAACAAACA

a score=23152
s chr3           107212263 1292 + 160039680 taaataaataaatagatcttaagaaaattaaattgactTAATCTTCGGTGATTTGGTGAGGCCCTGTGACTCTGAG-TCCTGACCCCATGTACTGTACCCCACAT-----------------TTCCAACCCCTTACCATCAGACTCTCAGCATCCATCACTCTAATCGTCATTAGTTTAGGGTACTCAGGATCTGGCCACATTGAGACCAGCAGGCCCACAACAGCCAAAAAGAGCCAAGGAAACCCTAGGTGGAATTCTAAGCCACCAGGGCTTGGAAACTTGAACAGTGGATAGAGGCCCTGATGGGTAGTT-TGGATCCAATTTATATCCTTCCTCCACTGTCCTTCCTGT----------TTTCTGTTTCTCTCAGCAAGACTCTATAGTGGCCACACAAAGAAGGTCAATGATAAATACTGTGACC-CATCCAAGAGG---------------------CCTGGTATTCTTGGTCTGGCCCACACCATTAGTCTTCATCAAAGTT------CCAGGGGGAAGGGA--------TGCTAGATAGACCCAGAGCATC---TCTGGAAGTGCATACCTGGTTGGTATAAGCGTAGGGTGGCAGTGGGAACTCCCTACCATGGATCTCAAAGACAACGGTGGGCATGATGTCCAGCCTCCAGCAGTCGATGTCAAA--CTAAGAGAAGAAAGAAGAATG-------TCACTTATTAAAAGAGGCACTG-----ATGGTACAGAACTCCTTCCTCCACAATGTATGACTCTTCTCAAGGGAAATGGAGGCTG--------------------------TCCAGATGGGGCCGGGTCTCAAAACAT------------AGTCCCACTGGAGGTATCAGCT--------------------TTCAGCAACACATGGACAGTGTCTTCCTTATATGA-------------CTAGCCAAAGTGTACAAGTATCTCAGGAA--------------AAAGGGAGAGGGGTTGACTGGTGGTAGCGGTGGACTGAGTAGAACAAGAAGGTGCAGCAAAGGTTACCAAGCCACAAAAGGCATAGGCTCTCAGGACCAGGAAACAGATGATAGCCACCATGCAAAGGAAGCATAAAGCTCTCACAGCAAGGGCAGACCAACG-----------CTGGAAGGA--------AAGCATTGGCCACTTTTAACAAATGGGCTCACCCAACATTCTCCTTCAACATTTCTTCTGTGTAGAAAGGGGCTCTTGATTCAGGGAGTT----TCTGGAAGTAAGGGGAGGACCTGACCTTACCTGGTCATTATGGCCTTGCACAGCTCCAATGACTTGCTGAATATTGAGGATGTCTCTACCAGGCCCCGTCAACAGGGCAGTGCCTGTGTCCAGAACGGCAGGGCAGCCACCTTGACAAGCCACCACTTCACCATTGATTGTGATCCTAGAAAATTAAATAGAAGGGCTTCAGGGTAC
s HiC_scaffold_1 117802008 1392 - 233722169 TAGATGAAAAAATTGAGATTCC-AAAATTGAAGTGACTTAATCAAAGATAACCCTGTGGGGTCCAAGAACTCTGAGCTCCCCATCCCCTGCACAGGACCCCACATCCTGGCACACTCATTCTTTCCAGCCCCCTCCCCTCTTGCTCTCAGAACCCACTGCCCTGAT------------------------GACTGACCA-GTAAAGACCTAGGGCCCTGAGACAG-----AGTAGCCAAGGACAACCTGAACAGAGACCTAGATCCCCAG----TAAAACCTTAAGCGGTACACAGAGGCTTCCACAGGCAGTCATGGGCCCGCCGACTCTCCTCCCTCCACCGTCAGTGCTCTGTCCCACACATtccccagcctcccaggatgAGGCTATAGTGGCCACA--AATAAGACCCAGGG---ATACCATAGCCTCAGTCAAAAGGGCCAGTCAGTCTAAATACATCCCCTGCATTCTTCATCTA-CCCAAGCCACTCCCTATCACCAGAACCAGGCCaccagaaaaagaggagaggggTTTGCTAGGAGGAGCCAGGACATCCTCTCCTGAGTCTCATACCTGGATGAGGTAGGCAAAGGAAGACAATGGATATTTTATGCCAAGGATCACAAAGACAACAGTGGACACACTGATCGGGTTCCTGAAGTCCAGATCAAAAACTAAGGAAGCAGGAAAGGGTGAGGGCCATCACCAACATGAGCAAGCCCCAGGTCAACAGCACAGAACCCCTTCTTCTGCACCATATG-----TCACAAGGTGAAGAGGGGCTGCCTTTCCTGAGGTCCTCAGGAAGGTCTCAGGAGGAGGCCTGCTCTCAAGACACGGCCCTCAATAAAGTCACATCAAGGGGACCAGCTGTCACCCCCCAAGGACAGATTCCAGCATAAAACAAAGAGGTGCTTGCCTCCATGAATCACCTCCAGGCCCAACCAGAGACCACAAGGACCCTGGGAGCTCTTGGTtggcagggaaggagagagataGACTGGTGA-----GTGGATTGAG-----AAATGGGATACAGTAGTGAT--CCAGGCCA--------------------------GGAACAAA--GCTGCAGCCACGCAA-TGAAGCAGGAGTTTCCCATAGCAAAGATGAGCTGAAGTGAATAGGTTACTATGAAGACCTCCTATGAGCTCCAACCCCTGGAGGGAAGTGGGCTTCCTCAGCATTCCCATTTGTCATTTCCTCCAAG-AGCAAAGGGCCTTCACTTCAGGGGACTGATCCCTAAGACTGAAGGGAGGTCCTGGACTCACCTGGCCATCCTGGCCTTGTGTGGCCCCAATGGCATGCGG--TGTTGGGGATGTCCTTGCTGGGTCCAAGTAGCAGGGAGCTGCCTGTGTTTAGGATGGCATGGCAGCCCCCACCACAGGCCACTACCACACCACTGACAGTGACACTGGAAGAGTAAATGGGAGAGCCTGGGGACAC

a score=8941
s chr3           107218614 1078 + 160039680 GGCACACTTTGCTGTTGCAGTAGACAGAGGGTACCCAGAGTTCTGAGGAGCCTGTGTCAAACACCACGGTGAACTCCTGCGGTGGTGTCCCAATGTAGATCGTTCCAAAGTACTCACTCTAAGAACAGACAGCTCTGAGTCAGAGGTGTAGTCAGGGACGGGGAACACGGGGGAGGAGTTGATGCTGGGCACAGATGCCTGTGAGTGGGTCCTGCAATTTCTACTCAGAGACCTAGGAAGAGGAACATCAAG-----GAGAGAGGA-------GAAAGTG------GTGCCCAGTCCACAGGGAGGACTCTTCATCCCGAAGTCTTC----------TGCACCCCCTCCCCAGGCCATACAGCAGTACTGGAATCAGCTCAGAAGCACACCGTGAGCCAGACCTAAAAGTCTTGCTTGG----GGAAGAGACCAGGTTACTC-TGCCAAGGCAGGAAGAAGTTAGCCCTAGACCTAGGGCATCTGCTGAGAGCAGAGTCCAGAAGCCCATTCAAACTTCCACTCTACCTGCTGCTT-CCAGCTCCCTC--------------GAGGCTGGGGCAGG--------ACTGTGACCTAGATGTAGAAATGAAAACACAGGCATAAAAGTA--CCGGTTGTTTAGTGCCATGAGTGACAGGTGGGGGGTGTGGGGGGGCAGGCTCCAGGAAGGAAAGGGGCACAATGGTGTTCTTGCCTGGATGCGAAGAAGAGAAAAGTAGAGCCCATGCCTTAGAAGCTGAAGACCAGGCACCTGCTGTCTCCAGATCTGATGGCCACACACTAAGACTTGCTCCCCCTGATCCAGGGAAGCACACTGAATGCTGAAGATCATCTGAACTCAGACCCATCCAGCAAGGCATTTGGAGCCCTGAAGACCAGAGGGCTGCCTTTGCTGGTTCTGCTGACCCGTGATAGAGCTTCCTTGATGGCAAGAAAATGGCCTCCATGCCCCACAGGCTCCACCATTCCTGGAAGAAGGAATGCTCTGGCAAGGCAGGAGCCTGGGAACATTAGAATCTGTGCCTGAGAAGGTCTGCCGAGACACTCACATCTAGATAGTTGATCAGAGGCTCACTGGCCACCACCCCGATGCGGGAGTTCTTCTCACTGAACTCGT
s HiC_scaffold_1 117804848  773 - 233722169 GGCAGGTTTCACTGTAGAAGTAGATGGAGGGTACCCAAGGTTC-AAGGAGCCCATATTAAACAGCACAGTGAATATTTGGAGTGGGGTCCCAAAGTAAACC-TCCCAAAGCACTCATgctggggacaga---------ggcagag-------cagaga----------gaagaaaacatcGATGCTGGG----AAGTTTTGTAAG-----CCTGCGCTTTCTGCTCAGGGACCTAGGAGGTTGAGcagcaggaaacagaaagaggacACTCTGGAGAGGGCTCCTCGTGTCGGGCCCACACTCGTAGCCATGCATGACCTGATCCTCCCATCAATCCTGCAACCACCCTCTAGT-----------TGCTGACATCAGCTCCAAAACAGACATTGAACCTCAGCTGAAA-TCCTGCCTGGCCGTGAGTGAGACTGGGCAACTCCTGCCAAGGCAAGAGCACGCTTGATGTGGAGATGGA---------------------TGGTGGCTCGCCTGTACCTCC--------TGCTCCTTGCCATCTCTCTCCTCGTTTCAGAGCTGAGACTAGGGTGGGGGAAGGCAAAGATGACCGAGATGCAGCAaggagagcatagaagaggaaaCAGGCTGGCTGTTTACTGCCAAGAGtgac---tgagaga------gagacaggctcCAGAAAGGAAGAGGGCACAAGGGTGCTCCTGCCTG----------------------------CGTCCTGGAAG--------------------------------------------------------------------------------------------------------------ATCCGGTA-TGCATTTAG-------------------------------------------------------------------------------------CCCAAAGGC---------------------------------------------------ATGAGAATTGATTTTTGGAAAGGCC-ACAGAGCCACTCACACCCAGGTTGTTGGTCAACAGCTCTCTGGCCACCTTCCCAAAGTTGTAGCACTTCACACTGAATACAT

a score=16991
s chr3           107219400 471 + 160039680 AGATCATCTGAACTCAGACCCATCCAGCAAGGCATTTGGAGCCCTGAAGACCAGAGGGCTGCCTTTGCTGGTTCTGCTGACCCGTGATAGAGCTTCCTTGATGGCAAGAAAATGGCCTCCATGCCCCACAGGCTCCACCATTCCTGGAAGAAGGAATGCTCTGGCAAGGCAGGAGCCTGGGAACATTAGAATCTGTGCCTGAGAAGGTCTGCCGAGACACTCACATCTAGATAGTTGATCAGAGGCTCACTGGCCACCACCCCGATGCGGGAGTTCTTCTCACTGAACTCGTACTGCTGTCTGCTCAGAAAGTCCTCCAGCAGTCCTT------------GCTCCTTCAGGGTGTTCCTCAGAGACTTCCCTTTGTGCAGGGGGATCCTGAGGAGATGGGGTAAAATCACAATAAGG--AAGACTGGGCTCTATGAACCATCTCCACACTCGCT---CCCAGCTCAGCCTCTGGCTGGCAATCCACTG
s HiC_scaffold_1 117806297 473 - 233722169 AGATCATCTGAGCTCAGGCCTTTCCAGCAGAGACACTGGATTCCTGAAGGCTAGaacattgcttttgctatctcTGCTGGGCCACAGTAAAGCTATC---AGGTCAGGGAGATGGCCCCCACTACCCACAGGTACCATGATTCCTGAAGGAGAGAAGCCTCAGG--AAGCAGGAACCAAAGG-CATGAGAATTGATTTCT-AGAAAGGCCACAGAGATACTCACACCCAGATAGTTGGTCAGTGGCTCTCTGGCCACCTCCCCAAAGTTGCA---CTTCACACTGTATGTCTCctggtattttctcagaaagtcCTCCAGCAGCCCTTACCCCCCCCCCAACTCCTGCAGGGTGTACCTCAGCAATTTCCCTCTGTGCAGAGGCAT-CTGAGGGAGTGGGAC-AATTCATAATGCGGGAAGGTCTGTATTCCATAAATCA-CCCCACCCT-GCTGGGCCCA-CCCAGCCTGTGGTCAACATCCCATTG

a score=11904
s chr3           107221491 529 + 160039680 AACTATGCTTTCCTATCCCCCAGGCTTCTTGCCTGGCTCCCTCTCCTCGGGGTCACACTCAG---------------TGTGTAAAGACAAGAGTGAAAGCAAA-------------------------------------TTCCCCTGGAGTCTGAGGGCCGGAAGAGCA-----ACAGTCCCCC-----------------TGCCCACCCAGGGTCCAACATTCACCTGGTGACCACATGGCTCTGGGAGATGGCGAGAGCAGCGAGGAGCAGCACAAAGCGCCTCATTCTGGATCACAGGAAATGGCCTCTCTAGC--TAGTACCCATCCTCTCGGCCTTTATAGAG---CGGGGCTCCTTCTGGCTGGATGCCCAAACTTCAGAGGCACCCGAAACTTCAGACCACTTCACAAACATAGTGAGATAGCACCTTCACTACCCAAGACCCACACTGATAAGAACTACAAAGTCTACCATTCTAAAGACTTCAACGTTGAAGGGTACACAGGC----CTTCAAGCTGGGAAAAGTCAACACGGGCCCCTTTACCCCAA---ATCCCCCTCTAAACGGGACCTCTGAGCTAACGCAGGTGGGGCTGCTACCAGGAG
s HiC_scaffold_1 117806770 593 - 233722169 AACCACACCTTCAT-CCCCCCAGGCTGCCCATCTCACTCCCTGTCCCAAAAGATGTACTTAGAAGACGAGGTCCTAACATGCAAAAGTATgagtgacagaaagaaaacattctGGAACCTGCAGCATCTTATCCCTAGACTTTCCTGAGGGACTGACAGCTGGAAGACCAGGGGCAAAGCCACTCAGAAATGATGCATCCAATACTCTCGTAGGGTCTGACATT-ACCTGATGGTCCCTCTGCCCTGGAAGAGAGCAAGAACTGCAAAGAGAACCAGCAGACACATCCT----GACCACA----ACTACCTCTGTTGTAGCAGTGTTCATCCTTGAAGACTTTACATAGGTTTGAGGTTCCCTCTGGTTA-ACCCCCAGACTTTAGAGACAGC----------ACCCACTCTACAAACATTGTGAGATAGCACATAGAATAATTAAGATGCACACTGATAAAGGCCACAAAGTCTACCACTCCAGGGACTTCAAATTTCAAGGCTAAGCTGCCTGATCATAAAGATGGAAAATGTCAACCCATGTCCCAGCCCTCTAAGTGGTTTCCCTCCAGGCTGGAGCTTTGA-CCAGCTTTGGTGGGGCTGCTGCTAGGAG

a score=8800
s chr3           107223218 297 + 160039680 TGGCAACCTTTCAAGGATAATGACCACAGGTGTTAGGTGAAACCACCTCTCCCACTGGAGGGTGACCA-CAAAGCCAAGAATCAAAGATCCCTTAGTGCTATCTGCTTTTTTATTTGTTCACACAGTTGGCAACCATCTGAGAGCATTCAAGTATGTGCTGGAACACTGCCCTACAGCCCAT--GGTGCAAAGAGAGGTTATCTGTGGGTGCAAGCCACAATCTCAAAAATGCTCTTAAGAACGACCATGATAAGAGTT--------GACACCTGGCACCACACAAGAATGAATCACCTTGGTCTAGA
s HiC_scaffold_1 117808197 304 - 233722169 TAGCAACCTCTCCTGGACAACAACCCTGGGCATCAAATGCAACCACCTCTCCTTCTGGAAGGTGACCCTCAGAGCCAAGAAACAAAGATCCCTTAGTTCTGGCTTC-TCTGTGTTTGCTCACACAATTCACATCATTCAAGCAGCATTAATGTGCATGCAGAGACCTCACCCCATAGAGCATAGAGTGCCGGGGGGGCTAATCCACTGAGACAGGCCAACAGCTTCAAAAGTTTTTTAGAAA--ACCATGATAAGATTTTGTTGTTGGTTACTTGGTACCAGTTGGAAACAACTC-CTTCAGACTAGA

a score=6112
s chr3           107223539 190 + 160039680 AAGTGGCTGAAACAACTCAGGACCCAAGGGCACCCTTTCCTCAGCACAAGGTTTTGTTCTCCACTCAGATATAGGCACTGATGAGGCCAACTGAAGTCAATTTTTTAAATGTTTCCTGTGTGTGTCTGCACTAGACACAACAGACAAAACTACTGTCATCTCAACCCAC-GTGGAGTCCACACTCAAGTGA
s HiC_scaffold_1 117808841 190 - 233722169 AATTAGCCAAAACACCTCAAGACCCAGGGATACCTCCACCTTGACACAAGCTTGTGATTTCCACGTAGATATAAACACCATCAAAAACAGCTCAAATCAATTTCTAGGGCAACTTCAATGTGTTTGTACTGTACACCCAGCAAA-AAAGCTGCTGTCATCTAAATCTATAGTAGAggacaaaaccaagcaa

a score=13756
s chr3           107227958 801 + 160039680 AGACCAAAATATCCACAGGTCTACCCTGTTCTAACACCTACACAGTCATTGGATGGTAGACACCAGGTACTGGTGGATCGGGTACATG--------------------GAGACACGGAG----TTAGCTCCATGAAAG-----CAGACCAAAGG----AGAGATTGCCATTTTCCAAGAAACACCAAAAATGTGGATTTGGGAGCAGATATATATCTCTGAAATAATGGTAGACATTAA---GTAATATTATACAGACAAAATAA--GATAGGT---AGGCCAAAGCCCTC--ATTCCAGTAACAACCT-------------------------AGCAACGGGCCTTA---GCAAAACCTAGCCTGA-----------AGCCTCT--GGACATGATGGAATCAACTAG-GGTTTCTCTAG---AAGACGGGGTAGGT---GAGAGGGAG-GCCGTGGAAGACAGGCCCAG---------------------GCTCACATGCAGATATGGCTGGGCCATCAAACACCAGAGAATCTGACATCAGACTACACCTATTGCCTTCTGTTAGATCCTTACCTGAAGATGTTCAATAACCCCATGTCAGTGAAAAAA-ACTGCTCACCACCACCTACTTACATCAATTAAGGAGTGTTTTTTCCT--AAGATGTATATGTGTTTAAAATATCAAATATTTAATCTCTAACAACATTAATTGATAACAATGTTTGTTTCCCTCCTAATGTTGTAGCTGATATCTGGTGTAAGTACTTTGAAGCTAATGTTT-GCTGCCCTGTGGGAATTGAAAACAGCCTTGATTACAA---TCATCACCCTGAACTGAATGGACAGACCCCATGGGGCACTGCACAGCTTGGAGGGGGTGGCCAC-----AAGAAGTACTGGATGGGATGGGTCTATCTGGG
s HiC_scaffold_1 117818122 885 - 233722169 AGCCTACAGCATCCGCAGGTCAGAC----TCTAACCCGAGCCCAGCCACCAGATGGCAGA------ATGGTGGAGACTCGAACAAATGATAAGTTCAGACATATCTAAGAGACAAGTCACCCCTTATTTCTACAGAGGGAACCCAGACCCAGGGTTGCAGGACTTGCCATCTATCAACGGACTCATGAAATGTAGATTTGTGAGAAAACACATAACTTTGAAGTAAGAGtagttgtttactttttattctgtGCAGGTAGGACAACCGTCCAGTCTCAGGGCAACTCCTCCCTACACCAGGAGCAAGCTCCCTTCAGTCACACTCGCTGCTGTGAGCCACTTGCCTCACCGGCAAAGCACAGACTAAGGAAAAGTCTCAGCCTCGCAGGACATGATGGCACCATCCATTGGGTCCTCCAGCCTGGACCAGAACAGATCTGGAGCAGGAGCGCCAGAGCAGAAAGGGCAAGCAAGGAGGTTCAGTGCGGGAGGCTCACCCCCAG-CAGTCCCGGGCCTCCCAAC-CCAGAGACTCAGACTTCAGGTTCCGCTCATTTCCTCCTATCAGG------------------CAGGAATCCTGCATCAGTGAAAGGAGAGTGCGCATCCCAGCC-----GCATTAATTAAAGAGGACTTTTCCCCCAGAGATGAGTgtgtattaaaaatatcaaatatt-aatcACTGGCAACATTAATTTATAATAATGCTTGTCTTCCTCTCAACTTTCAAGTCAACATCTGGTGTGACTGCTTTGAAACTAACACTCGGCTTTATCGAGGGAATTATAAATAGACTGAGTTAAAATCTTCTTCACCTTGAACTGAACAGACGAACTCCAAGTAGTGGCTTACAGAAGGAACAGGGCTACAGCATGCAAAAAAATCCT-----GAGTGGGTCTATGTggg

a score=31773
s chr3           107229664 4894 + 160039680 [encoded data, 5581 characters]
s HiC_scaffold_1 117821318 4985 - 233722169 [encoded data, 5581 characters]

a score=15801
s chr3           107235185 844 + 160039680 AAAATAAGGAGCCAGTCAATAAAAGAAAAATGGAGAGA----AAGTTGATCATCCACCCCACAGACCC--TGTGATTTAGTGGTGCATCCATGGGCCAGTGCCCAGAAAGGTGTGGTTTAGGAAGAAGCGCACATGCAGG-AAGGGGCAGG--CAACTGAGGAG--------GCCCACA-----CTGTCACAACTT-----------------CAGGCAGTCTGAGC---CAGGAAGGTCGGGCTGGCCAACTTCTCAAGGCCACGAACTCCTCTCTGCAC-CCTGGTGAACTAT-TCCATAGC-GGAAGGTCTGCCTGT-CTGCACATACACGGACAAGATGGGGAATGGCGAAGTTGCAGGGAGCTAAATCACACAGGTGTAAAGCAAGAGGTCAC--------CCAGTCAGGC--TCCAGACAGAGTCC------------AGACAAACT---AAAAGTTGGCATTCTTCAAGTCCCGGAAGCAGCGGTACCTGCCGTCCGGGAACCTGGAGCACAGCAGGCTGGGTGAGCAGGGACAGGTATGGTGTTGGCGTTTCCTCAAGAAGGGGATCTAGAGAGAGAAGAGAGTGGCATGTTAGCCACAGGAAA-GGCCT---------GCAAATG----------------------------------TCCCCTGCCAGCCAACAATAGTGGTGACTGTATTC------ACCTTggcacagagtgactcaatgatatgcccacatcacacagctgtaggagccaggatttgaacccaaatcaggcggactcTCCACACTCAGAACATGCGTGGCCCTGTGGGCAGATACCCTCCCACCTCTGCTGAGTGAATCTCTTTGCTTACCCTGGGGTGTCCTCAGCTCTGTGGCCAGGTTCTGAGGCAGAGCTGTGAAAGGACAAACATCCTCTCTGTCCACCAACTCACATCAAAGAGCACTGCTGAAC
s HiC_scaffold_1 117827476 901 - 233722169 AACATAAGGAGCTA-TCAGCTAAAGGAAGATGGGCAACTTTCAGTTTGGTCTTCC------CAGACTCCATGTGATGAAGAAATGCAACCAAAAACCTGTGCTCAGGAATGCCTGGTTCAGGG-GCAGGGCTCATGCAAGTGAGGGGCAGGGCCCAGGGAGGAGAGCGAGCTGCCTGCATAGGACCGTGATGACCTTTCCACATTCAGTTTCTCAGGCAGCCTGAGCAGTCAAGACAACCAGGCTGACCG--CTCTTATGGCCAGAGGTT-------GCACACCTGGTGCAATGTGTGCAGGGCAGGAGGGATTGGATGTGCTGTA------------------GGACTGAGGGAGTTAGAGAAAGCTGA-TCACATAG-TCCAAA---AGAAGCCACATTCAGGGCCTGTCTGGCAGTTCAGGGGTAGTCCGGTTCTGAGAGCAGACAAGCTCTTAAAAGTTGATGTTCTTCAAGTCCATGGAGCAGCGGTACCTGCCATCCAGAAACCGGGAGCACAGCAGGTTGGGCAAACAAGGACAGGTGTGGTACTGGCGTTTCCGGAAGAAAGGGACCTGGGAAAAGAAGAGAGTGAGA-GCTTCCCATAGAAAGTAGCCTCCTGCATTAGCAAATGCAgcctccccagccctggcagATGACTCACCCCACCTCCCACCACCTAGCATAATTAGTGATTGTATATGGGGAGATGTAGGCACA-AGTAACTGAGCAAAACACCACAGCTAGTTAGCAG-AGGAGCCAGGCTTGGGACCCAGG-CAGCATGGCTCCACAGAC-CAGAGCACAAGTG--CCTG--------CACGCGCACACATCTGTTAGCTGAACACCACTGCTCATCTT-TTATGGGCTGAACTCCAT-GCTGGGTGCCCGGGAGCAGCTGTGCAGGGACAGACTTGCCCTCTG-------ACTCACATCCAAAAGGAGTCCTGAGC

a score=56529
s chr3           107236828 3511 + 160039680 AGGGTGCAGGTGGACTGTGTCAACACCTGAACCAGTATCTAAACATCTGCAAAAGGCCTAT-------GTGAGGTCG-----CCTGGAGCAGCACCACCATGGCTGCTTGCTGGCCTGACTTCAGTCAGAGGCTGGATCCACTGTGGAGGAAGCGGTATATTGCCCTTCCCCACATCACCCTCAGAAGCCACAGATTCGCTGTTCTAAACTGGCCCCAGGA--TCCCTGTCTGCTGAGCCCATGCCCAGGCCCATCGAATGCCAGCCTAGTACCTTGTGGCTTCCTGGGTGGCACTCCTCTCCTTCACGCCCCAGTGGGGTACACAACCGCAGGCCCCGCAGCCACAGACTGATAGCGCAGCAGGTGCCGGCCCCACACTGGATATCTCGTTCACAGGCCTAAGGGAGAGAGAAAAGGGCCAACCGGTTAGTGTCGCCCAAAGGAAT---------------GATCCGGA-------TTAGGATTTGG--------------------------------------------------------------------AGGTGGTGACTAAGCAT---------CTCGGATCAACAGGACACCTTGGCCTGGGTCTAACATCACTGCTCGTCTCTTGAGAGGGACACTCGGGGCCCAGCACAGTACCAGACTTCAGTCTGGGGAACTCTTCCTG--CTCAGTGGTGA-----GGCAGTCAGTCCCTGTTCCCCGGGAAACCCTGT-GTTAGAAGGC---------ATAGCTTTTCTAATCCCAG-----------TCAACACTGGTTGAATATGATGGATTAGAACTCTGTGGTGAAGGAACTGGAGGGTCCTTCGTGGTCCAAGGCTCTGGATGTTGGCTGCTGAGCTTTTGGTGTCCTTTGTTCTTC--------AGCATCTATTCTAAGCTACCTTTCTGTGTGTCTCCCATC------CGGTAACCCACAGAGGCCTGATGGACAGTTATCCCCCCCATCCCCCATCCCCCACCCCCACCACTTCTCTGCTGGCCTCCCTGGACCCCCGACGTGGATGCACCCTTCTAGGTTGGGCTGCTTGGACCTGCTGGATAACCAGGTAACAAAAGAAACTTTCAAACAACCTAACTTTACACCAAAACCAGGGTCAAGAGAGCAAG-------------------------TAGGGCCTCATGGAGAGCCAGTCGACCTGGCCACTACCCAGAGGCCATGTGGC--TTCAGAACTGAAGTCTGGGGCTGAGTTTTCTTTCGTTATTCTCCAGTATCAGGCCACAGAACACCTTCAGGCTACCAGCATGGGACATGACAAGACGTGGAAGCTCCAACCTTTCTA---TTAGGAAGGATGAGGAAGGAAACATATACCAAATCTTTTTCATCACCCAGAGAAGGTCCAGGTGGCAGTCACCAGCAGCTAATCTTAGCCCAGCAGGGGTGCTTCTCACACCCAAGCCAGCCCCCTGGGAATGGCAGGTGAAGGGTGGTGGGGACTAGTTGGACTCCTCTCTCCTGATGATGGTA---GGCGTGGCATTCTGGGAGGTCC--GGCCCTTCAGCTGGGCTGTCACTAAGGAGCAATGGAAGGTGGAGAGGTCAGGAGGTCAGGAGCTGACTTCTTTCTGAGAGTCAGAGGAGGAATGTCAGGAGGATATGGGAAATGGAGGGCAGCTGGGCCTGCCTGGCTCT---CCTCCCCTCAAGACCCTCCTCTGACTGTTCATCTTGCCATTCACTTACTCCCCAAGACTGACCTGACCTTCTTCTCTCACTGGGCTCTTATTAACAGATGCCCCCACTTCCCTTGGGCCTCTCTACCT-GTTGCCAGTCTGGAATAGATGTTGGCGCTGGCTTGGTGGCACTGTGACTGTGCAGCTCATTGGGTCCTCCATGTACCCCCATCCCTCACTGTGTCGGGCAACC-------CCAACTTTTCTCCCGGGTCTGACCTTGGTCTTCACGACGGCTTTCATCAGTCATGCCTGCTC---------------------------GATGCAAG-------CCTGCCTT--------------------------CAGAGCATTTGCTTGCCCTGTGTGTTAGTT-------TGAACGGAGTCTCTTTCCTTTGAAAGGGAG------GTTGCCTTTTCTGTGAAAATTAA-AATTTATCCAGTTCCAGGAACTGGCTGGCATTACTCCATATTTACCTTCCAGGTAGAAGGTTGGAGGAAGTTGAAATAAAACTTAATTCTCTCCTTTTCT-TCCTGACTTTTGCCTGGGGAGCTCTTAAGAGAAGCACTGTTTTTTGGCTTG-TGATTAGGTCCAGTTTA---TGACCCTGCGTGTACCTACATGACAGGAGGGCA-GGTACAGCAGG-AGATGAGAAGACTCCATGCCCTGAG------------TGACAGACTCAGTGCCCCTGGCCTGAGCCTCTGCTTCAAGGTTA-------ACATGTTTGGGGTGCATCTG--CCAATGTTGGCACCACACATCTCCCCCTGGGAAGCCACTAAA--------GAGTGAAAG--GGGGTGTTTGAACATTCTCTCTAATAGCTAAAGT-GAGACTAAGGAGG-GACCCTG-TGTGCTTGCCGCCC-TGAACTC----------ACAGCATGCTCTGTGAGTTAACACGGACAAGTGAACCAGGCAAAGATGAAAACCAAGGTGTACACAAGACAAATGGGGCTGGGGATGGGACACTAATCTGCCCTGTAAACAAATGTCCTATGGCACACACCAAGGAATCTCCATTTTACTAAAGACTCGATGTCAAAATCCCAGCGCCCTCCTAATGTATTTAAAATGGTATTCTATTTACCCACAACT---------------CTGTCTGCCAGACTAAC------CCATCTGAAG-TCACACACAACCCCACTCC-------CAGACAGTGATTACCTTCAAAATCCCTTTGGTTTAGGTGATTTGGAGCAGC---AGAGCCTTTGTGGTTCTTAGTACACTCCCTGTTGTAGAACACCGATCTTGGCCCCTATACCAGGTCTATGGAGAATGCTAGAAACTTACCCCTGTGATGACCGCACAGTCGGACGCCGTTGCTAGAAGGAGCATGATGAAGATATGCACAGCGCCTCTCATGATCACTTGAGGTGACGACAAACACAGTCTACTTTGGTACCCCTCACTTCCTTCTGCGCTGCCTTGTGCTAGACAAGCCGAGAAGGCCAAGCTGTCCTACCCGACCTCCTTCGGATTTATATAGCCAGATCCAGGGCTGCCTCTAAATGCCTCATCTCTCTCTTCCCT--CCCATCACCA---TTATTCAGATGAGCTCAGAGGCGAAGATGAGACCTGAATCTCCAACAGCATCCCATCACCGTCAGAGCGGATACAAATGGATACACTGGGGACTTTGACAGTTGTTCTAAGTCTTCCAAGAGTACCACACTTCAAACAGTTGCCTGCAATTCACTTGATATCCATTTCCATCTCT--GCATCATTCTTTCCTGCTTGGGCCAGGAGGATAACTTTAGTGATGAATTAAGAGATT----TGGAACATTGATTTTTTTTTCTCCTCGCCCACACTGAACCATGCAGCGTACAGGAGTGTTTATATTCTCATACTCAAGCTATTAAGCATTATGTGAGTGTTTACCCTGGATTCAACACAGAGGTGGTTGAGAAGACAGA---GGGTGAGGTGGTATCTGTTGCTGAACTTTAAAGGTTAAAATTCCCAATATGGAGAC---AGACACTGC--------------ATCTGTGGTGTTGATGCTTCTCACAGATACACAGGTGAGGCTGCTCTCTAATAAGCTCTGGACAAGCGCCtgtgag
s HiC_scaffold_1 117829191 3579 - 233722169 AGGTGGTAGATGGTCCATGTCAGGCCCTGTAC-ACTGCACAAACATCATCTGCGGGGCTCTAAGAaaggtgaggcagaaggaccgCCAGCAGTGCTTCCATAGCTACCTGCTTGCCCTCCTGCAGGCTGGGGCTCGAGCCACCTTGAAGGAGAAGGC----TGCCCTTCCCTGC-TTGTCCTCAGGAGCCCCAGGG----------GAGCCAGGCCCAGGACCTCTCTGTCAACTCAGTCCTTGCACAAGGGCCCC--ATGTCAGCGGGATACCTTGTGGCTGCTCGGGTGACACTCCTCTCCTTGACGTCCCCGCGGGGTGCACATCCGCAGCCCCCGAAGCCACAGGCTGATGGCACAGCAGGTACCTGCCCCACACTGGACATCCCACTCACAGGCCTGCAGGGTAGAGAAAGGGGC-AACCCATTAGTGCCACCGAGAGAAACCAGATGCTCCATCAGAATCCAGAAGAAggcctaggatttagctcagtggcataagtacctgcctggcaagcgtgagttcaatctccaacacaaaaagcaaaaagtgcAGAAGAAGAGGCTGAGCATTGTCCCAGCCTCTGCCTAAAGGGACATCTGGGGCTGTGGTTACTGTCACTGCTCCCTGCACAGGCAGGATGCTTAGGGGTCCAAAGGCCATCAGACCTGGATCTGAGGAACCTCTCCAGTCCTCGGAGGCCATTGTCGGGAGGCAGTCCTCCTTCTCTGGCAAGTCTGGAAGTTAGGAGGCTTTGCAGGTAGAGCTTTTCTTGTACCGGCAGATGCAAGGTGGATGCTGATAAAATTGGGTAAATTAGAATTCCA--------GGAGTGGGTGGT------GGGTCCCAGACCCCTGGTGATCAGTACTGAGCTGCCTCTGACCAGTATTCTCCCCTTCCCCAGCACCTGC----AGCTG-------GTGCCTCCTCCACATGCTGGCGCTGGCTCTCAGG---CTG-TGAACA-----------CATACCTCTGCCCATACC---------TCTCTGCTG-----------------------AGGTAGGCTCCCAGAAGAGGCTTCAAGGCCTTGC-------CATTGTAAAGAAGGCAAC------ACAAGGCCACTTTATATAAAAGCCAGG-TCAGCAGAACAGGATTCTGAAGTGCTCCAGGTTTCAGGCAGGACTTGACAGAGAGGACCCTGAACTGGCCACTTTAGAGAAGCTCTCTGTCATTGCTGAGTTGCAGTCTGAAGCTGGGTTTTGATGTGCTCTACCTTAGCAGAAGGCCTCAGAGACCAGCTAG--TGCTTGTGTGAGACTGGTCCAAACTAGCAGCTTTCAACCCTCTCAGCtctgggagggaaagggga---------taTCAAGTCCCTTT--TCACCCAGAAGAGGTGCTCATGGCA-TCACTGGCTGCCTGTCT---------------------------CCAGCCAGTCTCCTGAAAGCTGACGGTAGAGAAGCA---GATTTCACTCAACTTTTCTCCTGCGGTGCTGGGACCTTGC-TGCCCTGCTGTGAGATAAAGGGCCATGCAACTTGG-----ACTTAGGAGCAGTC-ACGGCCCAGGGATCACGGGAGCATG---------------GAGAGTCAGATGTAGGACGCCAGTAGGACATGGAGAAATGATGGTGGCCGAG-------GGCTCTTGGCCTCCCTTCAA---CCTATCTTAATTCTTCAGCTTGCCATTCACACACTTCCC----------TGACCCTCATTTTCTCTTGTGCTTTT---------------CACCTTCCC---ACATGTTTACCCCGCTGCTGCTCTGGCCCAGGCTCTGGTGCCAGCCCAGTGAAA-TGTAGCTGGGCTTCC----AGGTCC--CATGTGTTTCC-TCCCTCGCTGTG--GGGCACCCATGTTTTctcaccttccttcctttcctcccccttccttccttccttccttccttccttccttcttactCCCACCCAGACCCTAGCACACACCACAGGAGGCCAGGATGCTTTCTGCCTTACAATCTTGTTTCTGTTTGATGTCTCCAAGGCATTGGTTTGCCCTTagcatttgttcttcttttgaaCTCAGATTTTGTCCTTTAAAGAGGAGAATGAAGTTATCCTTTCTCTGAACATTATTAACTACTCTGATTCCAGGAATTGTTTGGCATTACTCTGTATTTCCCTTCTCTGTgtaaaat--------gttgaaataaaattaatttcccttcttttttctggtgACTTTTACCCAGAAAGCTCTCA-GAGAAGCATTGCTTTTGGTTTTAATAAGAATGTTCCTTCCACCCTCACTCACCACATGCCCAGGCGAGAATGGTTCAAGGTGGACCAAACATCTGAGAGGACGCCATAGCTGGTGACATTTCAACTCTGAAATGCACAGCTCCCTTGGCT----ACTCTGCTGCCAGGCTCTATTTCTACTGGTTGAGGGTGTAATCAGCCCAATATTGGTGTCACCTTTATTTCACTGAG----CGCTAAATGGGTGCAGAGCAGAAGAAGGGATTTTAAAACAACCTTTCTGA-----AAAGCAGACACAGAGGAGGCGACACGGACGAAAGAGCAGCTaataaactctttaatgaagccAATATGCTATGT----TCCAATTGCCATGTGGGCCTCTCC------------------CACAAAAGATAAATT---------ACGGGGTGCTAACCCACTTTGTAAAGGGACTCCCTATTATACA---------ATCTTCgctttagaaaaaaacaaaatttaaatttctcatgTTCTCTTAATGGATTTAAAACAAGATTTGGTTCACACACAGCTTCTCAAAAGCCAAACCTGATTACGAGAACAAAGTGTAACTATTTGAAAATTACATGCTGCCCCTCTCCAGGGACGCTGTTGATGGTTGCCTCCCCGCTCCCCTTTATTTCTGATGTGCCAGGCAGTTCAAGAGC------------TCATATACT-----GTGCAGAA-GCTGA-CATGGTCTGAAAACCCAGGC-ACAGAGCACACTGGA--CTTACCCCCGTGATCACTGCAGAGTCGGACACAGTTACCAGGAGAAGCATGACTGAGACTTTCATGGCACCTCTCATGGTCACTTGGGGTGAAGGTGAAGGTTGTTCTCTCCGATGTCTCTCACTT---GTGGCTCAGTCTTGTGCTCAACaagcttggaaggc--aggtgcctctctcctcctcc--cagaTTTATATGATCAGATGCAGGA-TGCCTGTGGATGCCTCATCTCTACTTTCCCTTCCCCATCACCAACGTTACTCAGATGATCTCAGAGGCAAAGATGAGACCTGAATCCCTAACAACATCAAATCACCATCAAGACTAATAAAAATGGATATGTCGAGGGCTTTGACAGGTGCTCTAACTCTTCCGGGAACACTGCGCTTCAGACAACTATGTATGCCCCACTCGATATTCATGTCTGCCTCTGAGCATCTTTCTACGATGCTCAGGGTA-AAGGAGCGCTTTGGTAATGAATTAAAGGATCTGCATGCAACATTG----CCGTTTATCCTTCCCTGCACCAAACAGTGTGATATAGAGGCTTACTGATTTTCTTGCACACAAGCTAACAGG-ATTATGTGGGCATTTACCAAGGGCTCAGCACAGAGGTAGCTTTTCAGCTATGCTTGGTTAAGGTGGTGTCCCTGGCCCCAC--AAAAGGCAAAAATTCTAGTTAAGGAGACATTAGACAGTGAGAAAATAAGTACAGGCTTGTGCCGTTGATGCTCACAAGAGTGGCACACATAAG---GATCTTTGACAGACACGGGATGAATACCAGCAAG

a score=5149
s chr3           107249975 247 + 160039680 AGTGCTAACCCACCTCCCATGCTTGCCAGCCTCGGTGGGGCTT--GGCATGGGTCCAGCACTCTCTATTGACCCATATAAG----CTAGGATTAAGTGAGCACTTTCTGAAACCAGAGCCAACCCACTTTGATGGTCACGAT-GAGAGCTTCCTGTGAGACTTCGGTTGAAGGAGGACAAATTCAGTAGGAAATTCCTGGTTAGCAACAGAGTGGGTGGTTGGGACAGAAA-TGTTTATCCGGGTG---GAGATTTGG
s HiC_scaffold_1 117840254 246 - 233722169 AGTGCCAA---GCCTCACAAGCCAGC-AGCCTTCAAGGTGTTTTAGTCTTGAGTACAATTCTCC----TGACACACATAAGAAAGCTAACAGAAAGCTGGCATTTCCTGAAATTAGGACGa---tacttcaatttttttatttgcaaGCCTCCTATTAGACTTCAATTGAAGGAAGGCCGACTCAGTAGGAAATTCATATTTATCAAATGAGTGACT-ATTAAGATAGAAACTCTTCATCCCGGggtcagagatatag

a score=22655
s chr3           107256341 870 + 160039680 GCATAGTGAAGTAA-CTTCATAGGTAAAC-ACTGGTGAGGCCTCTTCTATATGTGGCGCCTGGGTAACACGTTATCACAACGAT------TGTGACAAAACTCCTTC------------------------------CAGGGTCCCAAACCACTAGGCAAAGTCAGAGCCCAGGTTCTCAG-CGAAGGCATGAATCGTCGCTCCTTGACAAACAAAGCCCCTGAAGATTAGGCAACCCAGCCCCTTACCTCCTATACAACAGCATACAGCAG--------CCTCCCT------CCTACTCTTATGAAAGCTAAGAGGCATACCAAGGCGGGAAAACAGCCAGGTCCCAGGCTCAACAACAACAAATCCAAACGATCGATCACCTGGGGATTGTGGCATAAGAGCTGCCATGGGGGAGAAAATGGTGACTTGCTAGACCCTGGGAAAGTGCTCCAGAGCTGCAGAGCTTCGTAATCACCCT--GGCTGGGCCACATGAACACTCAGGGGTTAAAGCCCAAGATGGTCTCAGTATGATGCAGATGGAGTACTAGGACAGAGAG-AACCTATTCACCCAC--CCATCAGAGCTCCACGCCAGGGTCTTACCCTGGA-GAGGACATTACTTCCATCCAGTTCTGATTGAATGCAGTAATAAACA-AAGCCGCCCGGGGACTGCTGAAATTCAGTGCTTTAGACT-GATGATAAATCTGTGCTAGCCAATTTCCTACGACAATTACTCAGCCACACGCCCCGGCAGAGTCCTCTGGGGAGAAGGAAGCTAGCCTAGCTCAGGAGCT-------TCACTGCTTCTCATTGAAGAATAATCCATCAGTTCCTTAAACTGCACAGAGAGCACATGGGTTATTGTTAATGATATTATTATCTAATACAAACTTATATGAGCTTTCATACATTTGAAATGTTTCACTA
s HiC_scaffold_1 117846485 877 - 233722169 GCATAATGATATGGGCTGTGTAGGTGAACTACTGCTAAGAGATAGTTGGAATGCAGCACCTGGATg----gttattataataataattattgttaCAAAGCCTCTTCAAGTACAACTTTTATACTCACCAGTGGGAACAAAGTCTCAGATAACCAAGTAAAGTCACTGATCTGGGTCTCTGATGAAGGTATGAATCA------CTCAGCATGCTAAACCTCTGAAGTGTAAGC----TGAGCCCTAATCCACTCTACA---GCACACAGCAGATGGGCCTTCTCCTTTGAGGACCTGTCCATCTGAAAAACTTAATGCATGCCAGAAC----------------------CTC-----TTACAAACTTCTATGTTC---TTCCTGAAGCTCATGATCTGACAGTTGCCATGAAGAAGCAAGTGGTCATTTGCCAAACCTTGGAAAAGAGCCACAGAGACACTGAGTTCCATAATTCCTCAAAGGCTGAGTCATGTGATCATTTGGGGGT-AAAGCTCAGTATG-TCTGATCATGACATGGATG-AGTGTCAGAGTAGACAGCAGCCTGTCCACCCAGTGCCTTCAGA-CTTGGAACAAGGGTCTTATCCTGAAAGAGGATATTACCTCCACCCAGTATTGACTGAACACAGTAATAAATGGAAGCTGCTAAGGGAATTCTGAGAATTGAAGCTTTATGCTTGGTGATAAATCGGTGCTGGCCAATTTTCCACTACAGTAATCCGGCCACATACTCCTGGAGAGCCCCC-------AGAGTCCCTGGCCCAGTT-AGAAGATATAACAGTCTCTTCTTCTCATTAAAGAATAATCCTTCAATTTCTTAGGCTGCACAGAGAGTAC-TGGGTTATTGTT-TTAATATCATTCTCTAATCCAAACTTATATGCTCTTTTATGCACTTgaaataattcatta

a score=47449
s chr3           107260681 1771 + 160039680 AAGAAGAGATTCTTGGTTTCCTTTGTGGAGACTGAAGGTCTAGAGAGGGA-TGAAGCTATTCCCAAGGAGCCCGTGA---------CTGGAATTAGGTGTCACTCCCCTGCCATC----GGGGCAGCCAGGGGGAAGAGAAGACAAA-------------------AGCCAGTGGTCCTGCAGTCC-----------------------------AGCAGAGGAA---------CACC------AACAGACAACAG--CTATGTTCT--------------------------GAGGCCTAGTGAGTCCATTGGGAGATGTGGGTGGCAATCCAAGCTGTGCCTGCAGTTCCAGTGAGACCCTTGGCTGAGTGAAGCTGCTAGACTTCCAAGGCACCAGGATAGAGAACTCAGGCAGGGAGACTGCAGGGATGCAGCAGAGTATGGCTCCAAAGCCCTTTAAGGACACGGCCCAGCAAAGGAAAAGAGGAGGCAACACCCACAGCACTCCAGAGGCAGCTGCCAGA-GGAGCAGTTCCAG-TAGGCTCCACTCTGCCGTGTAAATCTCACTCCAAAGCACTCAAATTAATTTCAGTAAGAGCTCCCTAGAGCTCCCGACTGTGTCACCCAGACTCCTCCTGTCCTGAAGAAAAACAAGAAAAGAGACAGGCAGAATTTGTCAAGAAATTAATTGAAAACAGCAATGAGAAGCTCATGAATTTGTAATAAGTCTAATT--TGCTCTCTCAAGGGCAGACTTGAATGCTTG-TTTCTTCCCATCTGGGGCTTGCTGACCCAGGGCCCCCAGGCTTCTGAGAAGAGAC-TTCCTGCCACCAACACACAGCTGTTCCCTGGCTAGCAAGGCCACAGAAATGCACACCCCTACCCCTACCCCAACCCTGCCCCAGTCCAGGAGTCAGAGTCACGGGTTGCAAGTAGTATCTAGGGTATCTCTTTCAA---------GAAAAGCTAGAAAATTTTCTCTGGGTATTACGTGAGTCT-----------GAAACAACTATTCATTGTGTTTGGATTACATGTTTACACTGGGTAATGCCCTGTTTGTGCAGATGGTTAAACCAAACCAGCATCTAAGCACTATACAGCTAGAAGGAAACAGATTGGTTTCCAGACCCCATGGCCTAGCAGAACACTCAGGACTAGGGGGCGAGCTTGTCCTTTGATTTGCTGAGCGC-----------------TCACAGGACTGGCCAAGGTCACGCAAACAAGGAGAACACAGGCCTGCCACTCCTGACTCTCTCTGACCTGTTGCTCCTTCTC------TATTTAACAAGCCAG-TTATGAAGTGAAGAGACAAAGATGAACACGAGACACCGTCCCCAGTCCCAAGGGAGGTGTGGGGGAAATGGA-GCATAAGTGACTGTGAtgttaaaaaaataatactaataattcaagccctggcagtggggcggtgagagaactgcgtgtactgccaacctcatttggggcattgtttcacaagcctacccgaggactgcttaatgacctcggggaatgtgtctccctgcga---ggcta--------taaagcctc--ctctttgtgaagctgtgtgttactttgtaggtcttgtccagtttaaaaaaaaaaaaaaagtacattgttctgtGATTAGAATTATAGAGCAGATAACACCAAGAATTATTTTTTTTTTAATTCTTCACTTCTGCTTCACGTTTTAAATGtttgattgtggtaa-atgcacataacacagaagttcccatcatagctacttgcagcgtgccgttcagtggagtgaggtacattcacatcattgtgcaaccatcgccaccaacc--ctcatggagttttttcatcttgcaaaactgaatctcacg-ccactgaataatacctcccattccattccctccctccctccctccctccc
s HiC_scaffold_1 117849658 1839 - 233722169 AGGAAAATAGTCTTCGTTTTTTCTGTGGAGACTGAGGGTCTGAAAAGTAAGTGAAGC-AGCCTCAGGGAACCAAGGAAATTCTCCACTTGAGGAAAG---AACCCCCTCGCCATCCTCCAACCCAGGTATGGGGAGTATAGAACAAATACAGAAACCCCTGGATCCAGTCAGCATGACCTCAGCCCCAACTGTGGCAACAGTTAATGTGAAATGAAGCACAGGAGACTGGGACTCACCTTCAAGGGCAGACAGTAGGTCTACTTTCTTCAAACACTGCAAGTGCTTACAAGTGAGGGCCAAGATGGTCTGGGAGGAGGCTAAGAGGTCAATT-------TGACTGCAGG-CTGGTAAGACCCCTGGCCAAATGAAATAGCTGGACCTCCATGACAGCAGCACAAGGAACACAGGCAGG-----TGCCAGAATGGAGCAAGGCACAGTTCCAAAGGCCTTTGAGGACATTGCACATTCTGGGAAAAGAGGTGACAACATCCACAGTGGCCCAGCAGAGCCTGCCAAAAGGAGCAGCCCCAAACCAGCTCCACTCTA---TGTAAATGTTGCTCTAAAGCACTCAAATTAATTTCAGCAAGAGCTCCCCAGAGCTCCCAACTAACTCGCCCAGATGCCTCCTaacct-aaggaaaacaagaaaagagagagagagaatttgtcAAGAAATTAATTGAAAACAGCAGTGGGAGTCTCATGAATTCATAACACAG-TAATTGATTCCTTCTTCAGGGAAGGCTTGGACGTGCACCTTCTTCTGTTTTGGAGCCCGCTGAAAAGGGGCCTT--GGCTTCTGGGAGGAAATGGTTCTGCCATCAGCAAACAGCTGTTCTCT--CTAGCAAAGCTTCAAAACCACACGTTTTTGTCC--------ACCTCGC----AGCCAGAAGCCAGGGCCACAGACTTCATAAAACATCTAAGGTACCTATTCCAAAACTCCtttaacaaacaagaaaaaatgccTCTCATGTTGCCTGttcccccctcaaaaaaaaaaaagacgctGTTTGTTTATTCACTGTCTGTTTGCATAGAATAATTCTGATCTTGTGGCGATGATGACATCAAACTAGAATACAAACCCTGTGGAGCTGGAAGGAAG-----------------CCCAGAGATTAG-ACAACACTCTAGGATGAGGTGCGACCTCA--CTGAGAACAGGTGAGAATATAACAGCTCTGGAAAATCCCAGGACCAGTCAAGGTCACAGCAACAATGACAACACA-GTTTGCTGCTCCCAACCCACTCTGCCATGTTACTTATTCTCCAGTTTTAGTCAACAAAGCAGAGCACTTAGTGAGGAGGTGAAGATGAATA--AGACATAGTCCCTATTATCAAGGCTa--gtgggaaaaataaatacataaatgactGTGgtgtt-aaaaaataatactaataatccAAACCTTGGAAACAAAGCTAAAAGAGTAC-GTGTGTTCTGCCAAACTCATTTCAGGCATGATTTCAGAGGCTTGCCCGACCACTGCTTAATTATCTCAGGAAATGTATCTCTCTGTGATTTGATTATTTACTATTAGGGGCTCAGATTCTTTTGAAGTTACATGTTAACATGTAGATCTTGTCTAG--TGAAGACATAAAAAATGTCCATC--------------------CAATAGATAACACCAaagattatcattttttaaatgccatggttttgttt----tctt-----tttaattgtagtAAGATACACATAACATAAAAGTTACCATCAT-----TTTTCAGCCGGCAGTTCGATGATATTAAACACATTCACATTGTTGTGCAATCATCATCACCATCCATCTcctaaatttttttaacttttaaaaccaaaacactataTTCATGGAACAATAAATCC----ccattcctttcctccctcccctccaccc

a score=16817
s chr3           107264363 1827 + 160039680 CTATTTCTTCTGTGTCTTGCCCAACGGATGCTAACAGTCACCAGAGACAAGCACATCTTCAG--------GAAAAAGCCCAGCAAAGAGCTTCATGGTTCCTTCTCA----GCTAGACTGGCAGCCCCTC--------TCCCAGCTCC---CATGACA-------CACTTCCCTATCCCTCAAG---CTTAAAAGGACCCATCCCTTCCCATCCATCACAACTCCCATTCAGCTTTAGCTAGGGAACCGCATTTCCTGGCTGTTTCTACCCACCACAGAGAGCACCCATGAAATATCTCCTGACAGACTCTAAATGGTACCAACATCAGTCACAGGATAAGCAGCAAACAAGCCTGAGACAGAGCAGCTGTCTCTGTCCGATCCAAGGTGCTATTAA---------TTAGGACACCGAGATGAGACCTGTAGTCCAGGAGTGACCTTGGCTTTGGCCCCAGCCAAG-TTCTTTGCTCTGGAGGGCGTTTCTCCCCATAGTTAGTATGAAAATC---------TCAGGTGATGCACACTGTTTGCTTTTTTTC----------TTTCTTTTTTTTTTTTAAATTCACAATGTTGCAGTCCCCTAAACTTTTTACCCCATGGCTACAACATCTCCCGAGGTTCTCAGAGGCCACTGTGGTC--------ACTGAACACATTGGATGCTC-AGTTGCCTACT--GCCATGGTCT--CTATTCTTCCCCTAGAAATTCAT-TACATAGGCAATCAGGAAGAAACGCAACT-CAATGAACCCTAAAAGCTGCGGAAACCCTTGACCTATGGCTTACCCACTCCGACTG--------GAGCTTCTGCTGTCCAGGGTCCCTGA-------CCAGGACCCTCACCTTACTCAGTCACCATGACAACTAAGAAAGGGCATCTCCTCCTTGAGCTGAGTGAGGTTAGCTATAGC-TGGCCAAGGACAAATGTGTGGAATGGGAAGAGGACA---------CAAGG------TTCT---CCACCTCGAGAGATGCATCGTTTGCATGCCTTGTGTGTAGggagtggcaggcttgtggttggcc-atctatgtctgattttactctttactagctgagtaagtgtgagcaagacagccttttaaaatctatttctt-gtgtcttaaaatggtgcaat-taatgcAATAACACAATACACAA-------AGCTTCTGAA--ATAACTACTGATCTATG--ACACAGCAACAGATAGACTATCAAGTGGCCTCATA-----------------------ATAATAGAGTTCACAATAATGGACTACCTGTTACCGAGT-ACATCATAGCCATCTTAACACCTCACTACTGAACATTTCTCACAGTGT----ATGACG-TAGGTAGTCCACAATACTATACCA-GAGCTG----AAAGTTTCCTATCTCC-----TAGTGATAC---CTTAGTATTTTAGTACAACATACATGTTTGTGGTGATGCTGGTGAAAACAGGCCAC---------------------CATGTTGC-------------------------------CAATCATATAAAA-----------ATAC---------------CTCTAGTTT-------------------------------------------------------------------------------------------------------------------GTACAGTACTGTCTACTTGATGAAGGTGATAAATGAGGATGTTGTTAACTTACATATACACTGTACCATACTTTCCCTTATTTACTTGA------TTTCTACAGTCTGTAGTAAGAGGACATCTCTCCT---GCTCTGC---------CTGTTCATCTC--CATGCACTTGTATTCGCCTCCCTTTCACACACGTCACTTTCTCTCTTGCTTGGTCTAATCCCACCTTGTTTTGTTCAGCATGTCCCTAAATATACAGTGAGCACTATGAACGGGGCCCATAAGAGGTCATATTATG------------ACAAAATTAAAAGTGACATAGGACAACAAAAATGAGTCAACACGAATCAT---TCAGCAGTCAGGCACATCCCA-CACACCTCAGCTATGATCCTGAGGAACAAGAGAAGTACCACAAGCTTCGAAGGACG-GTGACACTGAA--CAGTGACACAGAGACAA-CTTAAGAAGGGCCCATATc
s HiC_scaffold_1 117851551 2119 - 233722169 CTTCCTTTTTTGTGTCTTACCCAGCAGC--------ATTACCCAACACAGGCCTAATTCCATAAAAGCACGAAAAAGCCCAGCAAA-AGCCTCTTGACTCCT-CTCATATTGTTCTCTTCGTAGCCCTTTATGAGTGATCCCGGTTCCAGACCTGATCAGCCAGCCCCTTGCCTG-CCCACAAGAGTTTGAACAGGGTCTGAGCTTTTCCATCAACACTCAGTGGGATTCTGCCTTAACCAGGGAATCACATTTCCTGACTGT--CCACCCACCAGGGA---CATCTGTAAAATATCTCCCAAGAGACTCTAATCGCTACCAGCATCAATCA--GGATAA-------ACAAGCCAATCACATAGCAGCCATCTCTGTCAGATTTTAAGTGGTATTAAACCTGCTCCTTGCCACAATGTAA-GAGACTTACAG----------ACCTTAACCTTGGCCCTAGCCAGGGCTCTGTACTCTAGATGGTGCTTCTGGCTTTAGCTGTGCAGAAGATTAGATAGTAATCCTGAGATTTACGCATTCTAAGTATCTTACATGTGCatatttttcttagctttttgcAGTTACACCATCATGTTCCCCAGGCCTTCCTAATCCATGGCC-CAGTATTTTCTGAGATTCCCACTGGCAATAGCAGTCTGCACCATACTGGGTGCAGTGAATGTCCTAGTTTGTAACTTAGCAAGAGACTGTCTATGGTCTCACTGCCAGTTTATACACAGAAGCAATCAGAAGGCACCTCAACTTCAAGGAACCCTATATGCTGACGAGACCCTCGGCCTTTACCTTGCCGACCCTGCCAGCCTTTCATGAACCTCAGCTGTCCATACTGCCTGAGTACTGTCCAGGAGCCCCAG-TCCTTCAGCCTCTT---CAACTAATAAGGGGCAC----------AGC--AACAAGATTCCCTAAGGCCTCGTTGAGGACATGTGAGTAGGGTAGAGAGAACACAGTTGGTCTCTAAGGAGGGATTTCTGGGTCACTTTGGGGGCT--ATCATTTGCACGTGTCGTATTTGGTAAAGGGGAGGATGG-GGTCAGCTGACTTGCACCTGATTT-------------CTGGGTAACTTCTGGTATATGAACC------GATATAGTCTTCAGTTTCTCAAATCTGTATAACACAGAATAACAACACCTTACTTAACCTTCCAGGCTTCTAAATTACAAATATGGCCATGTGCTGTATAACAACATTTCATCAAT-GACTGGCTTCATATAGGATGATGTTTCCATATGCTTATAATAGAGCTCAAAA-------ATTCCTGTCACCTAGTGACATTGTAGC-ATCTTAATATCTTAGCGCAAAGCATTACTCACATGGTTGCGATGATTCTAGTTAAACAAATCTACTATGCTGTGAGTTGTATAAAAGCATAATACATCTGACtatggtggcaaacacctgtaatttcagca------------ttctgg-gaagctgaagcaagaagaccacaagttcaagccaagcTTTGGCCACTTTGCAACTTCATGAGagcagtctcaaaataaaaagcaaacaaacaaaacaggactagggatacagctcagtgcagaggccctgggttcaaccctaggacttcaaagtaagagaaagaaaggtgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaagaaaaaaagacctagCAATATACATGTATAATACATAAGATGTGATGT-GATTATAAATGAG--TGTTACTGGTTTACGATTTTCCTATACTATACTTTCTACCATTGTTTTAGAGTGTGTTCCttctatttata--aagaaaatgtttattgtaaAGCTGTGTGCTGAGTGACCGACCATAGCAGCAGTCACTGGTGTTTGTTTGACTCTTGATTGAATCACTTTTGCTTGCTCTTGATTTAATCTCACAATGCTTTGTTCAGCATGGCTCTAAACACACAAAATCTACTGCTAATGTGGCCAGAAATAGGCCTTGCCATGATTTACATGGAAATGAAGTTAAGAGTGATTAAGGACAAGGGTGAAAACTCAGTGATGATTATTTCTCTCCCATCAAGCTTGTCCCATTGCATCTTAGCTATAGTCCAAAAGAATGGGAGCAGAGCCA------TTAAAGGATATGCTGCACTGAAGGCAGTGGGACTAACACAAGTTTGTTAAAAGCCTGCATC

a score=17975
s chr3           107266788 655 + 160039680 TTATTCCATAGTCTCTTGTCCAGAGAATGAAAAACT-CTCTTTCAAGTGATCCACA---GTTTCAGATCAGCCCT-CTCCACCTTGACAGATGGGATTATCCTCGTTTCCCTTCTCCTCCGGCAATT-GAAATACCAATGAGACATTAGTCTCCTTGCCTCTGACTTTCTCCTCAAGTAAAATGCCAATGGCCTAGAATTAATGTGACAGTTGATTTACTGTGTGGTGTCTGAAAGCACCTGCCCAAATCCTCAGATTCCTGGGAAGGGCAATAAGGTAGGACTTGACCACTTTATGGGACTGACTCACTGGCCTGTGATATTTAAGCTGGCTGGGTAGATGGAG-----AAGAGGCTGACTCATCAGATCAACAACATCCTGAACAGTAGATGGCCCCAGCCCAAGGCCAGGGGCACAGTCACCTTCTATGCCCTTGC----CTGTTGACCTTTCCATATCTCAGTTACTTTATCCACAATACAAAGGTGGGTCTCTTTCAGGGGATGACCATGGTCTTAAAATGACATGAGAGATATGAACATGTCTGCTTTGCAAAAGTTGACTTTCCTCTCTAAATACAAGAGTGGATGCCAAGTTCACAGATTCTAATACTAAGATCT----AAGTGTGGCAATCTGTAGCATTAAATATTGTAGTAAGAGTGTCTGCC
s HiC_scaffold_1 117854618 622 - 233722169 TCATTCCATATCATCTTGTCCAGAGAGCAGTAAACTACTTTCCTTAGTTATCTGTGCTGTTTTCAGATTAGCCCTTCTCTTCCTTGATGGA-AGGATTATAT--GCTTCTCTTTCCCTCTGGCAATTTAAAATACCTGTGAGACATCAGTCTTGTTGCTTATGACTTTCACCTGGGGGAAAATGCAGATGGCCCAGGATTAATGTAGCAGTTGATTTACTGTGTGGTGTCCGAAGGCA---AAACAAGTCCTCTGGTTGCT-GAAAGGGGAATCAAGGAGAAGGTAGCC---TTATAGGACTGACTCAGGGTTGCATGTTATCTACACTggtt---taaaaagagttgcctaggGACCAACTCATATGGG-AACAACACTTTAAGAAGTAGTTGACCCAGTCCCAAGGCCTTGGGCACTTCCAACTTGTGTGACTGGGCAAGTCAGTTGATCTCTCCGCATCTC----ACTTTATCCACAACATGGAGATAGAGACCTCTTAGAAGGTAACTCTgggattaaaatgaaataatgtgtGTCAA-GGATGTGCTTTCAAAAGGT-------------------------------CCCAGCATACAGATTTAAGAACTGAGGTCTTTCAAGCTGAGATATGCAGTAG--TCCAGAATTTTAGAAAGAGTATCTACC

a score=39029
s chr3           107270349 2069 + 160039680 TTTCCCCTGAGGTAAGAATCAGT-AGTTCTTTACTGAGGGTGTAGGTGGTGAAATAAAGACATGAGGATGTTTCCCTGACAACAAGGACTCTGCTAGGGCAATGGCAGGGCTGGGTGGCAATGGGATCCAGTGTAACCCCACAGATAGGGTCTCTGGAACCCACCTTGGGCTCACAAGAGTCATGTCATTGGGTAGAGTGACACATAGCCAAGGCAAAGATAAGCCTGCTTTAGCTAAGGGCCTCACTGCACAGGCCTGCCCTGGAAATACATTT-AATACAGGTAATTTCTTTTCCATTTATTTTCAAGAATTCATTTCACTTAGCCAAT-TCTAAATCAATAAATCTTAACATTAAGTCTGATTTGATGCGTGATGCAGACAGTCTAATTAAGGCCAGGGTATTTTATCAGCTCCTCTAAGCTGTCTTTTCTCTGTTCTGTAATTTTTTTTTAGGCTGGTGTTGATCATCTTTTT---ATTCATAAGGGCTTCATTCCCATTTGTCATGGTTGCATTAACTGGGCATCTAATAAAGGCTTGGATATAGAAGTCTGTATCTCATTTATCCTTGGGAGCAAAATTAATAAAGCAAAGGAAAAATTGCTTCCTGTTCCAAAATGTTTTTAGCCCACCTTGACTCATCGAAAATATATTTCACTGTGTCTTCTAGACTCAGGACTCAGCTC--AGCTTTGGGACACAGTGACTAACTTTATCCTTCACTTACTGACAGCCCCATCCCTATGTCCTTGCCTACTCCATGG-CTGGAGAAGCTTGGATAAGAGTGGCCATCAGCTTATCTTCCCACCCATTTGCTCACTACATGTTTCTTTAGGACCTTCTAAGGCTGAGGCTCTGATATAAAATAGGTTCAAAgaggtgaaggtgtggctcattggtaaaaccttgaaagcatgaacacctgaattcaacccccagatgtgtataaaaatgccgggcaaggtagtatacgcttgcaatgagcaacagagacagagagattcc--tgggattgctggccaggtagtctagcctctttggttaattataagacaatgagagatgctgtctcaaagtatgtaggcagttcctgagCATGATAGTacacacacacacacacacccacacacacacacacacacacacacactcacacacCAACACATAAGACATAAGTACATGGCACATATGTCTATAAAAGCTTTAAAGGAAGATCCAAAGCCCAAGTTAAATAGGTTGGCCAAGGTCCAATGGAAGAAAACTATCTTAGCCACAGAACAATACTGGGAGCAAGCTGGAAAGCTCATCTGTTCTCT--TTTTGCCTCTGGGAGGGTAATCGTTCCAACTAGTACTTCTGTTAACAAAGAGTCACCAAGTATCTATGATCCTGCTTGACTTGTGGGCTTTCTGGATTCATGAAGGCCCTCATTCCccagggataccattataatgaatcaccaattgagtggttta-------------------ccctcaagtctggagaatagaagccccaaatcaaagttttggcagaatagtttccttctgaggactgtgaggaagaaatatgttcgaggcttctctccttggcctatagacagatgtttgcagctggagcctgcctttcccctgtgcatgtcttgttatataaggatgtcaattacataaggttaatgcccacactaatgtcttcttcattttaacttgattgccatctataaaggccctgtctgcaaacatgcccacaatctaaggcacttgattttggatcctcacatgcgaatatggggggagattaacatttaacttaaaacaGTGACTCCCTCTGAAGCAGATTTAACTACAGTTCAATAGCATCTGGCAGCATGCTAGAGATGCTTGGAATAT-CGAATTCCATGTCAAAAAGAGGTTTATGTTGTAAAGTAGACACCTCTCCTCTCTGGACCTCATATGTCATATC--GAGAGTAAGAGGTGTGCACTGGGTCTCCA-----CCACCTCTGCACCTGAATTCCAGGACCGTGTTCTAGG-------CAGAGTCGGGCAGTATACAGGGGAGAGTAACAATTAGACTCCACCACTTTCAAGCAGGACGATCT
s HiC_scaffold_1 117858211 1554 - 233722169 TCTTCTCTGAGGTAAGAGCCAGTTAGCACCTCAGTAAATGTATGggtagtaaaataaaaaca--aagatattttacTCTCCAAGAAGAATTTTCTAGGTTAATAACAGGGATAGTTGACAGTGGAATCTATTATTACCTGG-AATCGGGGTCTCTAAAACCCCCCTGGAGTTCA-GGGAAGCATGC---TGGGGAGAGTGATGTATAGCCAAGGCAGCTGCAAGCCTGCATCTGACAAGTGCCCCAGTGTGCAGGCTTAGAGtgcaaatacattttaatataggtaatttcttttccatttattttccaaCACTTATTTCATTTACCCAACCTCAAAGTCAATAAATCCTGGCATTAAGGCTGATTTGATGTGTGATGCAGACAGTCTAATTAAGGGTAGGATATTTTATCAGTTCCtctaaatttccttttctctggtctgtgatgtttttata--ctgg-gttgatctttttttttttattcataagGGCTTCATTCCCATTTATCATGGTTGCATTAACCAGGTATCTAATGAAGACTTGAATATAGAAGTCTGTATCTCATTTATCCTCAGTAGCAAAATTAATAAAGCAGCAAGAAAATAGCTTCCTGTACTGGAACTTTTGTAGTGCACTCTGAATCatctaaaatacattttgcaGTGTCTTACACAATATGGGCTCAGCTCTAAACTTT---ATAGAG-GCCTAGCTTCAGTCTCCATCCACTGACACTTGTGTCTTAATTCCTCTGTCCAATCTATTGCCTGGAGAGGATTGGAGTAGTGTGGCCAGGAGCCTA---------------------CACATATGTATCGAGCATCTTCTATAGGTTAGGCTTGGAGATA------------------------------------TAAAACT---------------------------------------------------------------------------------CAGAGAAGGTCAAATTCAGGTGGAAATGATGGC---------------ATTCATTTGATCA--------------------------------------------------------------------------------------------------------------------------------------------ATGTcca-------ttgaaagaaaaat----------agccaAATA-------------------------------------------ATAAGGTTGGAGACAAGGTAGAAAGATcatcttctctctccttttgccTCTGGGAGGGTGATCTTCCCAATCAACCCTTTTACTAATGAAGGGCTACCATGCATCTATGGTATT-TTTGACTTACAGACTTTATGGATATATGAACATAGTGGTTTTCTAAGGCTGCCATATTAAACTACCACAAAC--AGTGGTTTAACCAATAAAAATGTATTGTCCTACAGGTTCGGAGGGtagaaattcaaaattaaggTATTTGCAAGGTTGTTTCCTTTT-AGAGCTATGGTAAGAGGAAATGTCCTAGGTCTTTTTCCTCGGCTTATAAGTAGATGTCTGC----------------TCCC-----TAGATCTCTTTATAT-------------------------------------------------------------------TATATTTGTCCTAT--------------------------ACATGGCTTTGTGTCC--------------------------AAATTT----------------TCCCTCTGAAGTAGTATCAA-------TCAACA--------CAGC---CTAG------TTGGAACACACGAATC-----------AGAAGTTATAGCTCTAAGTTAGCCATTTACCATTTCTGAACCTCAGATTCCTTCTCTGAAGAGTAAGACATCTGGAGTTGGCTTCTAATATCCCCCCCTAGTACCAGAGTTATAGGATTGTGTACTGGAGAAATGTCAGAGCAAGGCAGTACAATAGGGAGGTTACTGGTTTGGCTCCACCTCTTACAATCAGGGTGACCT

a score=5417
s chr3           107272956 786 + 160039680 CCCACTAGAGCCCTATGCTGCAGCTTAGAATGAG---ATGCTTGAGCTGCCAAAACTTTGGCATTCCCCGTGACAC-ACCTTCCCTGTCTCCACCTTACCTACCTCCTGCCCGCTCTACTTGACTTTTG-ACTTTTTCTTC-TTAGAGTCAGGGCTAGAGCTTCAGGTGATTTTTTTTCTCATTGTACTT---TATAATTTTACATAGAATATGTAGAAAATCTAA---------TAATA--ACATCAATATAACTATGGCATTTGGCACAGCTTTATAGG-GAAGCTATGTAGATTCAGCTTCTCCTGTGGATATGAGACTGATATCTGCAGCAATCT---------CTTGGATATGAGACTGATATCTGCAGCAATCTCTTGGATATGAGACTGATATCTGCAGCAATCTCTTGGATATGAGACTGATATCTGCAGCAATCTCTTGGATATGAGACTGATGGCTGCAGCAATCTCT-TGGATATGAGACTG------ATATCTGCAGCAATCTCTTGGATAT----------GAGACAGATGGCT--GCAGCAATCTCTTGGATATGAGACTGATATCTGCAGCAATCTCTTGGATATGAGACTGATGGCTGCAGCA-----------ATCTCTTGGATATGAGACTGATATCTGCAGCAATCT--------CTTGGATATG---AGACTGATGG-----CTGCAGCAATCTCTTGGATA--TGAGACTGATGGCTGCAGCA----ATCTCTTGGCACTGTGATTTTCTCCTGTGCATC---ATCTGGATTATAATCAACCTAAGGAGACAAACAGATTTTCTTATTCAAATTGACTTTCATAACACACCAACCTCTCTTACACAAGGT
s HiC_scaffold_1 117859949 825 - 233722169 CCCACCAGGATCCTGTGCTATAGCTCAAATGGAGTGAATGCTTTAGCTGGCAAGACTCTTGTGATCTGTGTGATGTGACTTTTCCCCTGTCTACCTTATCCAAATCCTACCCATTCTGCTTAGGTCCTGCACAGGCAGGTCATTTGAGTTAGGGCTAGAATTTCAGGTGATGTTTTT-CTCAGTGGActtgtattttattatacttataCTATAGA-AAACTCtaaggccaggtgtgatggcacatgcttgtaatcctagcacttgggaggttgaggcaggaggatcactgcaaattta-------------aggcaagcctgagctacaaagtgagtttaaagccagcctgaacttcagagtgaaatc-----ctgtctcaaaaagacaaaaagaaaatct-----aat------aatatgtaattatttcatttaatatcgTTTTGTAGAGAAACTAGGTAAACCTAGCCTCCTCCATAAACACTAGACTACTTGACATCTCTACAGCTATCATTTGGATCTTGCTGTCATTgagttggtttgttttgttttgttttcttgaa----gtgCTGCTGTC------AAACCTagagcttttacactga--gctacatcccaggtcctttcagttttttattttgagacagtgtcttgctaaattattaaattgcctagggtgggctcaaacttgtgatcctcctacctcagccccaagagtagctgagattacagagtgTGGCATCGTGCCCAGTTGAACTATTATTTTTCCATACCCACCCACACCTAAAC---AAGCAATGTAAGGAAACAAACAGATTTTCTTACTCAACTTTACATCCACAATGCACCAATCCTTCTTACATAGTGT

a score=5001
s chr3           107273986 143 + 160039680 CTCCTTAGGCCCTTCATTTT-GCAGT--TTTCTGTGGCCTTGGTGCCCCCTAGTGGCTCATTAGGGTTCATTGCACTGAAGGCTTGTGACTAAGCACTCGAGTTGTCCAGAGGC-----CAGTGTTGGTAGCCCTGGGATAACACATCTCT
s HiC_scaffold_1 117861227 145 - 233722169 CTTCTGAGCCCCTGCACCTGAGCAGTGTTTTCTGAGGCCTTGGTGCCCTCTGGTGGCTCATAAGGGCTCATTCCACCTAAGACTTGTGGC------CCTTGGTGTTTGAAAGACAGCCTCAGTGTGGATGGACCTGGAGTAGCAAACTCCT

a score=59196
s chr3           107278928 3399 + 160039680 [encoded data, 4189 characters]
s HiC_scaffold_1 117866667 3977 - 233722169 [encoded data, 4189 characters]

a score=14330
s chr3           107283539 913 + 160039680 TCTAAACataaatatat----------------ttaaactaaataaatttaatCTTACACTGAGA-CACATGCATTAAGAGTTTGCTGAATATTTTCTTTTTGGCTTTTCAGGAACATTATGATCCAGAAACACGATGGCATCACAGTGGCTGTGCACAAAATGGCCTCTTGACATCTGATGTCAGCTCTCCAGTGGCCTCTCACCGGGATTCAGTCATGCCTGTCTCAGCTCATTTGTAAAACTATTAAAGTTCCAGAAA-----TAGGCCATTCAGTTAATGTCCAATGTGGACTCCCTTATTTATATGACAGCCAGTTACCAAGACATCAGTTAGAGAGGAGCAATTGTTTGGGCTTTTGTCACtctgctctttggtgacagtcactgtagtccaggatcacagcccatcatggcctagaactatgtagcccaggctgacttcaaatgtatggtcttcctgctttaaacacatacatcctggaattaaagcatttgtcactaAGGTTTAGGTCACTTTGTATATAGAACTTCATTATGGCCAATAAACCTGTTCTGAGGAAAGTTTGGTTCATTTCTGGTCTTTTAAAATTCCTACTTAATGCTCACTTTTCTTTTTTCAGTTATCAAATTGTGGGttttttggtttttttttttttttttttttCTCTAAAAGATCTCTATCCCAAACTACTTGTTTCTCTTTC---GGTGTCTTAAAATGTCTGTGTTCTTATGCAAGGGAAGATGG--------ATCAAATATTTCCCTCAACCTAAGTGACAAAGGACATATCATTGAGTCCTTAGTAAGACCAGAAACTTATTTCTCATTATAAAATAGGATAGGTACTCCTGGTTGT-----------TGTGTGTAACCAAAGCCTAGGGGCTAGCATGGTCACCATCAGAACTTAAGAACTTAACTGACAGAAGGCGTGTGTGCTTT
s HiC_scaffold_1 117870881 754 - 233722169 TCTACACATAGAAATATGTTAGTTTTAATTGTCTTAACCTGGGATCTTTTAATGTTATACTGAAAGCCCACTGGTTAacattttactgaatattttt------gtctttcaggaACATTATGATCCAGAAACATGATAGCATCACAGTGGCGGTGCACAAAATGGCCTCTTAATGTCTCCTGTCAGTTCTTCAGCACCCCTTCATTGAGACTCAGTCCTGCCTGTTAGTGATC--TTGTAAAACTATTACAGTT----AAATTGGTTAGGCTCTTCCTCTGATGTGCACTGggcatttttctgtttattttagagTAAGT-----------------------------------GGCTTTT-----------------TAAC---------------------CAACCTATCA------GGATATTAGTAG--------------AAAAAGATCATGTT---------------------------TTGAGGCAGC--------AGGTCCAAGTTACTTTGTATATAGAATTTTACTTT---CAATAAATCTGTGTAGAGGAAAGCTTACATCTTTTCTGGATTCTTTA----------TAAACTTCAAATTTTTCTTCACAGTTATCACATAATTG----------------------------TTTTCAAAGAGATGCCTGTTCCAAACTACTTG---CTCTTTCAGAAGCTTCCTGAAATGCCTGTAGTGTCACAGAAGTGTCCATGGATATTTAAATCAAACATATTTTTCTACTTCTATA--AAAGCTAGTATCACTGTATTAT--ATAGG---AGAAACTTGCCTCTCAT-----AGTACAGTTGGTACTCTTATTTGCCATGTAATATGTATGTAAAACTAAGGTTAAGAGATTAA---GATCATTATTTGGACTCAGGACCCCCATT----CAGGGCCTGTACTCTTT

a score=41168
s chr3           107290262 2603 + 160039680 CTAAAAACATTTCTGGAGTATATAATTATCTCTTCCTCTGTGTTTTGCC-TTCTGCTGACTGTTTCTTTGATCTTTCCCACCAACACCCATATCTGCATCATGTTTCCATGGTTGCGTTCACGGAGCGTTCTCCCAAAC---TAAGCCATCCTTCTTTAAGAATTTTAATAAGAAAAATT-------------AGAGATGGGCTTTAAGAGGATGAGA-AGCCCATGTTTAAAAAACAGAACA------AAGGTGCAGATTT-CCAGATCAAACAAAGAAACCATACTTGGGCTTAAAATACACTCTGGATTAAAACCTGGAATGTTGGTGTAGG-AGATCAAAGGCACTATTTTGTTGACTTT--------TTTTTTTTTTA--ATGTGGAAGGTGGAGCTAAGGAAGGAAATTGGACTGGAAT-GTTGAATTATTCGGGTAATTTTCTAGGACTCAGCCTTAA-TTATTCCCAAAATTCAGTAAGAAAAAGTTTCATTAA-AATTACTG-TAAGTATATAT---CTTCATGGAAAGTT---------AAAGTAATCGGGT-TCAAAAAAGCGATTAAAATGGGGCCTGAAACCCCAAATTAAT---CATACTACTGAGT-CAGAGGGCACAAAGGGGCACAGA-----GCAGCCTGGATTTACTAAGGACTGCAGTGGGTTTGCTAAGATGGACTAAACCCAGGTACCCACGTTAAGCAGGCACTCTATCATGGAGCACTATCTAGCATGGAGCACTATCTTCAGCTCCAGCACTGCCATTTGTGGTCCAGAAAGAGCTCCCCCGTCTCTGGAAGACTTTTATGCTTCTTTTATAAACTAGTCTCAGC--CTCCCTGAGGAACTTTGGACAACTTT--CAAAAATCTGGAGTCCCATCCCCC--------ATCCCAGACTT-GAGAAGATTTTCTCCTTGGTTTACC---CAATGGCTTTTGGCC------------GGAGGTGAAAAAAGTGTACCTTGT-----GGGCTGGCTGGAAGGCTGGCCTGAGTTGTTCTCAAGTTACAGCCTTTCCTCCTCCTCCCTCAGGAAGTAAAGTCCACAGGCAGGAGCTGCTAAACCT---CAGCGCTGCCCCCGCTTGACTACAGTGCCTGGTTGTTTCCACCAAGCAGCGGAATGGGAAGCCTTAGAAAGAGAGTAACGTTTTAGGGAA-AATA------ATTTTTCACCTGAAATTTTCTTGTCTCTA---GAGGATTCATTTGCTTAAAGGTA------AGGTGAAGTGGAATTGAAATTGGGTGATGGGTTGGTCTTCTCAGGGACCTGGAATGACTAGAATCTCTCTGTCTAGAATTATCTAATAGAAATCTCTCCCCCTacacacacacacacacacacacaTCTCACAACTGGCATCTTTCTGTCTAATCTAACAGACCTTACTTTTTTAGACACTAAACACACACACATGCGTCGCATACACACCTGGCTGCTTTCACAAGGACAG---------ATGAGGATAACATCCATTCCTCAGAACACGTTCTTTCTCA---------------ATATGTGGGTATTTA------TTTACTCAACTCTGTCTGAAGTTAGCACAC---TATGACATTCTAATCTTGAATGCTT-AGCATCTCTCTCCTAAGGTGGAGACTAGTCTCCTGCAGAATCATAAGTTCAC--CACCACAACCAAAATATTTAACCTATTTAGTACCCTCTATTTCAAATCACTCATATTTCCTAAGTGGG-CTTCCCAATTTGT----------TTTTCTGATCTAGTATCCTCTAAAGAGATAAGTTACTTTGT-TGGGCTATCTAGTTCTTTAAAATACCTA------------AGCTCCATAAAAAGGGGCTGTCTAAACCCAAGAGCCCCCTCCCATTTAACTTTTCTTTAGATTCAAGGGCTGGTTCACAGGAATGGATGGGTAACACATGGCTTCCTCTAAAACTGGCTTACAGCT-------------GATGGAGATCCTGAGCACAAGTAGAGTGGCCATTCCC--ATCAGGGACTCGAGGTTATTA-------ACATCAGGCAGACTTCA-CGTAACTAAGGGGGAACGGAAAAGTGAAAAGT---TTCATACCATGGAACAAAATAAAATTTAATAGTTTAACATgcacacctataatcgcagccttcaggaagtaaaggaaggacagccacaagttctaggccaggtggagccacaaagcaggTCTTAAAACCAACCAAAAAGACAAACAAAATATCCCACTTACAGTTAGATTACTTTCTTGACTACTGAATCAACT--GTTTTGCATCTGTTCCAGTGATCTCCGCATGTAGCCT--ACAGGAAGCATCATGGTGAAGAAGGAAAAAACGCCCTCCCCTTACACCAAACCCCTTGATGGAGGATGGGGGTGGATGGTCGTGCTTCATTTTTTCCTGGTAAGTGTTTCTTTCCCCTTTCCAAGTG-CTGAACTGTAC----GAAGAAAAGCTCAAAGCAGTCTAACAAGATCGATGAAGGAATCTTGAGATTTGAGTAGACAGGAAGCCAGGAACTTGCCCAAACTGCTAAGATCAGAGGCCACCTTGGCTGAACCCAG----AAGCTGAGCTGTTTGTTCCCCTGAGAGAAAGGAGAAGCCTTCCCATCCAGGCCTCTCCGCTGCCTCTTCATCATCTCTCAATC--AGAGAATGCTC-CAGGCATGGCTGGCAGTTCTACTTTGGCAGAATGGCAACTGGGATTTGGGGAC-ATCGTATTTTCGACTAAGTAAGAGCTAGCACAGGTC
s HiC_scaffold_1 117874200 2414 - 233722169 ctcAAAAGAGCTGTctagaaaacatttctttcttcctctgagtTTTGCCCTTCTGTTGAATGTTT----GATTTCTAACACCAGCAC-------TAC------TTCTCTTGCTTACCTTTACAGACCATCCTCCTAAATGATTAAACTGTCCTTCTGCAAgcactttaataaaaaaaattgattaaaGATTACAGAATTTGgctttaagaggctgaaacaccCCTTGATTTTAAAAGGGAACATTCATAAACGTGAAGATTTTccagataaaataagaaaa--acactttGACCTAAAATACACTTTGGTTTAAGATCTGGAATGTCGGTATGGGGAGATGAAAGACAATTTCATGTTGActttatgttcatttatttttttggtatgtggagggtgaggcagaaggaggaAATGAGAATAGAAAAGTTGAATTATCCCGGTAATTGTCTGAGTCTCAAACTTAAGTCATTTCCAAAAACCATTAAGAAAAAGTTTTATCAAGAATTACTGATAAATATATACAACTCTTGTGGGAGGTGTTTGACATGAAGGTAAGCAGGTATGAATAAAGCAAA-------------GAAGCTTCACATTAGTAAACACAATCTTCAATGAAAAAAGCACACAAGTTTAGAGAAAATTGCCGCCTGT-----------------GTGTGCCTATCATAGTGAATCAAACCTAGG-----GCGGAACACAGGCAAGCCAcg---------tgtctaccactgagc--tat-----gctccATTACT----TGTGGGGCTTCGGAAAAGTGCAACTGTTTTACAAA-------------------TAAGCAAGCCTTAAGAGTATCCTGAGGAACTTGAGATACGTGTATTGGAATTCTGG--TCCCATCCCCCCAGTCTTGATCACACACACAGAAAGGATTTTCCTCATGGCTTACTTAACAATTACTTTTGACcctatggtttaaaaaaaaaaaaaaaaaagtaccttttTAGGAAGAGTGGTGGG--GGCGGGCCTGAAATGTTCTCGAGTTTcagcctttcctctt--tccctcggGAAGTAAAGTCCGCAG-CGGGAG-GGCCTAACCTAACTAGCTCAGCCCGCGGCT--CTACAGTGCTCACTTGTTTTCACAGGGCAGCAGAACGAAATGCCTTAGAAAAAGAATAACATTCTAACAAATAATAtcacttatttttgcttttaaattgccCTGACTGTACCTGAGGATCC-TTTGCTGAAAACCACATCAAAGGTAAGGTAGAAA-GGGATGATGTGTTGGGTTTGTTTTCTCTGAGGCCTGGAACGACCCGCATCTCTGCTTCCAGCCTGCTTTGAGGACAGCCATT--------------------------GCACCTCAC-----------TTCTGGCTGAT-------AACTCTCCTTTCCAGAAAGAAA---------------------------CTGCCTGCCTTCAAGCTGACAGTGGCAAACAGTGAATGCTGCACCCCTTTTTCAGAACATTTacaatttcatatatatgtatatatatatatgaatatgtagaTAACTTTACTTAACAGTGA--GAAGGTAGCAGATACTTCTGACACTTCACTGCTGAATACCTCAGCATTTCT-----AAACAAGA----AGTTTCTTA-ATAACCATAAGACCACACCATTCTACTCAAGACACGTAATCT---CAGTACAGCACA--------CACTTATAGTTGATATTCGGGGTTTCCCCAACTGTCATTCCCATCTTTTCTAATCTGGAACCCACTTAAGGAACAGGT-ACTGCATGTTATCTATTCAGCTCTTTAGAATAGCTACAGTTTAGCAAGAACTTTGTAAAAGG-------CTAAACCCAagg--cttttctccttta---tttctctaCACTCTAGAGTTTGCT---------------GAGACACAT--TTTCCCCTAGAACTGGCTTGAAGCTCTGGGGATTTGAGGACAGA-ATCCTAAATGTTAGTGTTGTGGCCATTTCACAAACATGCTCTGCAGTTCATTTTTTAGTTGCTTCAGGGAGACATCAATATAATTAGGGGTGTAGGGAAAAATTATAAGTGGGTTTAcaacacagagaaaaaggaagtttTAAAGTTTA----------------------------------------------------------------------------------------------------------------------------------GATCAATTCCTTGACAACAGATTCAGCTATGTCTTGAATCCACCACAGGGATCTTC-TGTGTGATTAGAACACAAAACATCATGCCAAAGACAGCAGGGAAGACCCAACCTTATAATCAAGCTCCAGATGGAGGATGGGGATGGATGATTGTGTTTCACTTTTTCCTGGTAAGTACTT-----CCCCTTCCAACTGCCTGAGCTctacagagaaagaaaggttC--AGCAGCCTAGCAACATCACTTGGGAAATCCTGATATTTGAGTGAGCAGG-GGCCAGG-----------------------AGAGGCCCAT---GTTGAGCCCAGGAGAAAGCTGAAATGT---CCCCTTTGATTGTAAACAAAAAAGCTCCAATGCAGTACTTTACTTT---TCTTCAAACTCTCTTAAACCTGGAAAATGCTCTTAGTCAGGATCAGTAGCTCTGTCCTGGCTGCATGGCAATTAGAATTTAGGAATAATCATACTTTTAACT-----AGTGCTAAAACGTGTC

a score=49339
s chr3           107297678 1685 + 160039680 acttttctcttaaacttcaact-----ctcactataaaac--aacagtgacatatccttttcataagcttgaaatggggactaaatgagattatTTCCATG-AATCTGTCCTGACACTTTAGAGAGGAATGAACTGCTTCTCCCACCCCCTACTATAACCAGAAACCACCAGTAAGACAAATGAGCAAGCACTGAGATGCTGGAGCAATAGAACCCCTGGTAAC----ACTTCTAG---------CCCACTTTGCACCTAACAAGGACTCT---GTATGTTTTGATTTAGGTAAATGTGTTTGTGATGGGAATGACCAAGACATTTGCAATTTTCTTTGTGGTTTTTCAAGAAGAGTTTGAAGGCACTTCAGAGCAAATTGGTTGGATTGGATCCATTATGTCATCACTCCGTTTCTCTGCAGGTATGGAGTAGGCAATAAGCTTGCTGTCTATGGAGAATGACCACAAAGGTCCATGACAACACCATCACTCCTTTAGGGCTGAAGTAATGTACATTCAAGTTCACCTATTAATATGCATTAATATCAATATGTAATATTGAAAGAGACATCAGTGTTTACGCTCTATTTAACTTGGTAATTAAGTTGGGAAAATTAAGGTTAAAAAGGAATTAAGgtcaggtgttggtggtgctcgcctttaatcccagcacacgggaggcagacggtggatctctgagttggaggccaacctggcctacagagcaagttctagaatgccaaggctatacagaaaaacatccatcttgaaaaaaGACAGGGAAAGGAAAAAGGAATTAAGA------ATCCAAGTATTTAATTAATGATTGATGTTTTTGCATGC---------------CTTGTGGTTTTTTTGTTTTATGTCTGGTAAGGCTTTA-----AACCCAGAGAGCCAAGACTTCAACCTGCAAGTGAAACCATT--CAGCTCTAACTATGTGATCATATTCAAAATAAACATTAAACCAATTTCTCCTTTA---GTTCTAGTTGG---TGTAATATGGA---GATTAGCGATGCAAATTTGTACTAAACAGAGGCCACTAGTACAAAC--ATGATTTTATTTCAAT-----------------------------------------------------TTTGAATATACAATATCTTATACC-------------------------------------------------------AATTGTCTTGCTTTCCTCTGATCACTCAGTCAAAGAACACA-CAGGGCCTAAGGGATGTCTGAGGATATTAACTTAGCA----CTTTCCCTTTCTCCTCTGAAGGTCCCCTGGCTGCTATCATCTGTGACGTACTTGGAGAGAAAGCTACCTCCATTCTTGGGACGTTCCTTGTCTCTGGTGGCTATGTCATCAGCAGCTGGGCCACAGGCATTCCCTTTCTTTGTGTGACCATGGGGCTGCTACCTGGTGAGTTCACACTCAATAGTCCATAAAGGATGTAACAGGAAACTGTCCTGCTGCCCACAGATCTTAAATAC---ATTATCTCATCTACAT--CATCTGATCTGATAACTAATGATCTAAT----------TTCAAACTTTTTTTTTTTTTTAAAGGTTTGGGATCTGCTTTCTTGTACCAAGTAGCTGCTGTGGTAATTACCAAATATTTCAAAAAACGATTGGGCCTTTCTACAGCAATTGCCCGTTCTGGAATGGGGCTGACATTTTTGTTGGCACCCTTTACAAAATTCCTCATAGATCTTTATGACTGGACAGGTGAGTCAGTCTACATTTCTAAACTTTCAACAC-AAAAAACGTAATGTTTAGCCCTCCTT--TTGAATACTAGAAGTGAAGCTTT
s HiC_scaffold_1 117880017 1724 - 233722169 ACTTTCTTTCCAAACTTCGTCTGTTCTCTCAC-ACAATACTTAGTACTGACCCATCTATTCTAAACCATCGAAATGAG-----AATGAG-TCACTTTCATGTAATATGCTTAGCAACTCCAAAAAGGA-TATcctgccaccaccacca--------aatGAGGAACCATCAATAAAGCAAATTGGTATATAGTAGTGAGCTGGAGCAACACAACCTCTAGCAGCTGTAGCCTCTTGTGTACTAGACTTGCTCAGCATCTGATT-GGACTCTTTGGTCTACTTTGATTTAGGTAAATGTGTTTGTGATGGGGATGACCAAGacttttgccattttttttgtggtatttcaagaagagtttggaggtACCTCTGAGCAAATTGGTTGGATTGGATCCATCATGTCATCGCTTCGTTTTTCTGCAGGTA-AAAGTTGGCAATAAACTTGCTGTCCATGGAGAAGGTCCACAAAGG---------ACACTGTTAAT---------------------------AGGTTTATTTCTGAATATGCACTAACATATAATGACAAGAAAGTAAGGAATTACAATGCTCATCTTCTGTTTGACTTGGTATCTAAATTGGGAAAATAAGGATTCAAGGGAAGCTTAGGT--------------ACTTAGCT--AATTTCAtgat---------------------tcaaattt---------tcttttttttaaagcagcatcTA-AGtattcaagctg---------------accttgaat------------------------ttaagGTGACCCACCTCAGCTTTGAACTCTTGAGTGTTGGGTTTACACGTGTGCACCATCCCCAGCTCATAGTTTACTTGT-------CTGGTAATGCCTTACTACAAGTCCAACAAGCCAGACCATCTACCTGGAAGTCAGACCACTGAAAGTTCTAATCATTGAATCacattcaaaacaga-acaaaaccaattttCCTTCTACTAGTTTTAGTTGACACTATGGTATGGTAGTGATTAGTAATCTGACTTTGTACTAATCAAAAGC-ACTAGTACAATCTCATTTTTTAGTTTCtatattttcagtatttcccTCCAAACCATCTTATGACcttttgatgtttttaactctctaaaaaagcaaaatattgtgTCCAATAACAAGAAACCCAGTAAAAACACGTTTTTGAAAGATACACATACACAGTGAAGTCCTCTTATTTTCCTTTAGTCATTTATTTAAATCACACATCAGAGATTAAAGGATGCCAAAGGACACCTACCTTGCAgctgcctttctttcttctccctcagGTCCcctggctgctgttatttgtgaAATGCTTGGAGAGAAAGCTACCTCCATTCTTGGGACATTACTTGTTGCAGGGGGCTATCTGATCAGCAGCTGGGCCACAAGCATTCCCTTTCTTTGTGTGACTATGGGACTTTTACCTGGTAAGTACTTTATAAATAGAGTATGAAAGATGAAACAG--AACT-TTCAACTGCCTGTGGGTCCAAAAGGCCTAGTTATCTCAGATACAGAGTATCTCATCTGTTACCAAAccatttaatgtaaaaataatccaaaactattgtttttcttttaggtttGGGTTCTGCGTTCTTATACCAAGTAGCTGCTGTGGTAACTACCAAATACTTCAAAAAACGATTGGCTCTTGCAACTGCTATTGCCCGTACTGGGATGGGACTGACATTTCTATTGGCCCCATTTACAAAATTCCTGATAGATGTTTATGACTGGACAGGTGAGTTCATCTAAATTTGTAAACTACCAGCTCTTCAAGACTTAACATGCAGCTCTCCCTTATTG---ACTAGAAATGAAGATTT

a score=76099
s chr3           107300561 4106 + 160039680 [encoded data, 4900 characters]
s HiC_scaffold_1 117883030 4377 - 233722169 tttttactttaaatGGGAGGCAAAATAGTGTTTTC-AAGAATTATTGCTACATGTAACGCGGTCTCTTCTAAGACTATGAGGGCAAGGTATTATGAATGGAAaggttctttataatttcctaatttctctc--cTATTTAGGTGCCCTTATACTATTTGGAGCTATTGCATTGAATTTGGTGCCTTCCAGTATGCTCTTAAGACCTATCCATGTCAAAAATGAGAACAATTTTGATATT------AAAGTTAGCAGTTTGTCTGCAAGTGGCCCAGAGGCACTGTGTGGGACAGAAACATCATCCTGTAATGAGACACAAGAGTTTTTCATCAAGGATGGTATTATGCAGAAAGCTGGACAACCTGATAAAACTTTTACAGTTTCACAAAATCAAAGTGAAGAGTTCAACAATGGGCCTCACAGGAACAGACTGTTATT---GAGTAATGAAGAAAATTGTAAGCAAAAGGCTATTTCATGGAGCTGCAAACAAAAACTCTTTGACCTTTCTCTCTTAAGGAATCCTTTCTTCTGGATATTTACCTGGTCTTTTCTCCTAAGTCAGTTGGCGTATTTCATTCCTACTTTTCACCTCGTTGCCAGAGCCAAAACACTGCGTATTGACATCATGGATGCCTCCTACCTTGTTTCTGTGGCTGGTAAGAAACCTACAACATCCTACCTAGAAggaaatgaatttaattttataaaagtttacTAAATGTTAAGTTGAAAAGCAGCAACAAGAATTGAGGGAGGGAGGGCTGGTGAGTCTGTgcttggtaagtgtgaggttgttaGATCCTTAATACCGAAGGGGGTTGGGGAGTGAGGTAAAGTtgtgggaaggggaaaaaaaagttgtGGGAAGGCTAGGGAAAGCAACATTTTGGGACACTAGATGGAGCACCAGGGCTCTGCACAGATCTGCCATTATACTTTGCACACCAATTCCACTAGAGAAGGGATCCTCAACGAAGCACTCATTGTCATGCACTCAACACAGTAGACATCAGTATTGtt---------gatactgaattttaaaaagctggtaCTCAGTGGCAGCAgctactcaaaaaataaaaagtcccaGCTGGACAGTGTAGTACAAAAGTTGAAAGGATTAGTACTTGGAGCTTGTCTTCCCAGA---------TTCAGGTTGCTATTTTTCCTAGCTATGTGAACTTGGGAAAGTCTTTTGCTTTCACTGTGCCTCAATGTCCTCATC---TGTGATATACATATAACAGTACCTATCCTTGTAAGGGTCAggatgaaaactataa--tacatgtAGTTTAGAGTAGTATTTGTAGTTAAGTATA--TTTCCCCTTGAAATAACAGTAAAACAAGTATGACTCAAGGCTAATCA------TATTAGCTAGtatttaaaataactcaaaatgtgaattaaaa--atgaaagccaTTTTAGTtgaatatattcataaaa------atgctTAAATACTTTATCAAGAAGTTCAAGATTCTTTCAGATGacaaaacaggaataaaagagcctcagaggctgaggtaagagaactgctgtgagttcaagaccagcccaaattACACAGGGAGACTGTCCCCacccccaaaagaatgaaaaagaaacaagatgaaACGGGCTTGTTCTAATTATCCAGAAATTCTCAAGAGTTCAAcagtaattttccccttaatattTCTTGGAGAAAAGTTAATTTACCAAGTCTTTACCAAATTGAATGCAACATTCCAATTAAGAAGATGCTCTATTGtgagtaaataaacctttctccctttaacaaCAAAAAGATCCTCTAGTTCAGTCAAATAATGGTATGTATCTTAAGGGAAAAATACGTGCCCAAGTACTATTTTTTCAATGCATTATGTGAATCAATTTAGAACAGA------CTATAT-AATGGGGCCAAAAAAT-CCATACATTCCTAATATACTGTATATCCTAGAAAATAACTG--------------------TGAAAGTAAAA----------ATGATAGtatcctt-----------------------------------------tttccat------------------ttcttcttttaa-----------------tgacACAGTTTATGTTTGAACT--CCAGGAAGA------------ATATGAAGTACAAAA-------------------------CTGGA-------GCTCATGCTATTCCTGG-----TGAAAATGTCTC----CATGTTTAACTGCTATGTCAGGTTATAACAGGATAATGGGTTAACAAGGCTCTTATCGTGAaacctaaaaaaaggaaaaataataatgtggTTCTTAACTTTCATTCATTGTACCATAGCTCCAATGTTTCAGTATGATCTCCTATGTCTAGACTTCC----TGTTTTCAAATTAACCATAATGACCTTTGGAGGCCTTAATTCCCAGCGTCATAAGCAGTTAATAGTTCCACTTGGGCATGGTGGGGCATACCTCTGATCCCACTACTCTGCAGGCTGAAGCAGTAGGACTGCCAAGAGTttcaggccagcttggactacacagtgagttcatagtcagcctgaactatagtgagaccctgtctcaaacagcaaaacaaaaagaattccaattcttttttaagatttttattattcTCCAATCTTCCAGCATTTGACTTCCTGAGA-ACAATGTCTCCAAGAGTCTACTAGTCCTTTAGAAATCTATCTGAAAGTATAAAGGTCAGCAAGGCCTCCTAAGCCTAGGGGACCCTGTAATCAGGAATTCTCTGTGGAGTGTTAGTTATTAGCTTTCCAAacactctctcactctctctctctctgagtggATTGTTTCTCACTTAATTCTGGAGAAGCCTTGCCTTTTTGGTTACTTTACTGAATGTACTACAGTAAGTAAATGCTGAGTGCTATTTTAGtacacaaatgaaaacatttttttccccctctcatATCTTCACCTCAGAATGAAGTCATATTACTTGGGGAAAGATGTCTATGAagtctcactttt-taaaagaggTTAGGAAAATGGAATCAGGATTTCCTGaaattttttctatattatttcagGTATCGTTGAGACAGTCAGTCAGCTTATTTCTGGATGGGTTGCTGATCAAAACTGGATCAGGAAGCATCAGTACCACAAGTCTTACCTCATCTTCTGTGGCATCACTAACTTGCTTGCTCCCTTAGCTACTACATTTTCACTACTTATGACCTATACCATCttctttgctgtttttgctgGTGGTTACCTGGCATTGATACTTCCTGTACTGGTAAGTAGA--CATTCATTAATACTGTTAAACCATTTACTGTTAGTAACCATCTCCCCAAAAGAGAATACTTActttatattacttttaaaattttacaaaaatataccAAAGGTCTCAGAAATCCTATAGCTAGTTGTAATCTATCCAATTATTCATCTTACCTTAAGGAGA----AGGATGAGAGAGCCAGCCACATGGCACAGAAAGGAATTAAATTCTAACAGGGATCAGCAGGATTCCATTTTGCCTATCAGTTCCCTAAAACATTAAGCTTATGCTCACTCT-----------CTCCAGAACTCTTTGGCT----CCAAGAcccaattttgaaaaaaacagtaaaccaGTATAGCTTCTTTA
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